Modified sequence Experiment N duplicates Sequence Length Missed cleavages Proteins Leading proteins Gene names Protein names Phospho (STY) Acetyl (K) All Phospho (STY) Probabilities All Acetyl (K) Probabilities Max Score Min PEP Intensity Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity corrected 7 Reporter intensity corrected 8 Reporter intensity corrected 9 Reporter intensity corrected 10 Phosphoproteome Acetylproteome Fullproteome TMT Channel Normal 1 TMT Channel Normal 2 TMT Channel Normal 3 TMT Channel Normal 4 TMT Channel Normal 5 TMT Channel Normal 6 TMT Channel Normal 7 TMT Channel Normal 8 TMT Channel Normal 9 TMT Channel Normal 10 TMT Channel Ratio 1 TMT Channel Ratio 2 TMT Channel Ratio 3 TMT Channel Ratio 4 TMT Channel Ratio 5 TMT Channel Ratio 6 TMT Channel Ratio 7 TMT Channel Ratio 8 TMT Channel Ratio 9 TMT Channel Ratio 10 Curve signal Log EC50 Curve slope Curve top Curve bottom R2 Curve RMSE Log EC50 error Curve slope error Curve top error Curve bottom error EC50 pEC50 Curve effect size Regulation (ac)AAAAAAAAAAGAAGGRGS(ph)GPGR ddPTM_HeLa_A485_30min_R1 1 AAAAAAAAAAGAAGGRGSGPGR 22 1 Q86U42-2;Q86U42 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 0 AAAAAAAAAAGAAGGRGS(1)GPGR 45.844 6.16E-12 0 24316 32114 28219 44936 63340 40238 44362 49478 36738 63954 TRUE FALSE FALSE 29725.01031 35869.45295 38658.38239 47390.7399 57033.6472 42344.79946 34883.6963 37343.44292 44110.97962 48011.44479 0.619123429 0.747102136 0.805190982 0.987071731 1.187917744 0.881973031 0.726570434 0.77780294 0.918759679 1 15.55109073 -4.729965974 2.048827526 0.914993896 0.63877916 0.396664218 0.121649262 0.431611191 3.379143485 0.038730253 0.156771973 1.86E-05 4.729965974 -0.276214736 (ac)AAAAAAAAAAGAAGGRGS(ph)GPGR ddPTM_HeLa_A486_30min_R1 2 AAAAAAAAAAGAAGGRGSGPGR 22 1 Q86U42-2;Q86U42 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 0 AAAAAAAAAAGAAGGRGS(1)GPGR;AAAAAAAAAAGAAGGRGS(1)GPGR ; 67.312 1.67E-10 288190000 57279 66536 74556 66635 106231 77319 112886 107049 67409 105562 TRUE FALSE FALSE 53264.03789 61263.44504 103426.0799 155129.6475 92906.51742 67780.1679 84640.72881 82676.27956 73252.0664 79128.58811 0.673132671 0.77422644 1.307063381 1.960475364 1.174120753 0.856582552 1.069660547 1.04483451 0.925734531 1 16.27191139 -6.122446834 7.842799839 0.988862419 1.208646345 0.080109234 0.328923963 0.82999995 49.6882326 0.122054473 0.122205799 7.54E-07 6.122446834 0.219783926 (ac)AAAAAAAGDS(ph)DS(ph)WDADAFSVEDPVRK ddPTM_HeLa_A486_30min_R1 1 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 2 0 AAAAAAAGDS(0.995)DS(0.995)WDADAFS(0.01)VEDPVRK 42.59 0.012623 18405000 9167.5 12538 7992.7 5565.7 9369.3 13105 15628 12550 10291 12652 TRUE FALSE FALSE 8524.905591 11544.44322 11087.68749 12957.23087 8194.115029 11488.23834 11717.7091 9692.638965 11183.03217 9483.856849 0.898885941 1.217273036 1.169111646 1.366240664 0.864006612 1.211346662 1.235542595 1.022014473 1.179165011 1 13.21125817 -10.76665346 0.643393016 0.904276341 1.135326284 0.061917854 0.148789623 385.4595769 48.58317548 57.1938097 0.055355516 1.71E-11 10.76665346 0.231049943 (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK ddPTM_HeLa_A485_30min_R1 3 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.889)DS(0.111)WDADAFSVEDPVRK;AAAAAAAGDS(0.542)DS(0.458)WDADAFSVEDPVRK;AAAAAAAGDS(0.899)DS(0.101)WDADAFSVEDPVRK ;; 125.59 1.72E-75 2328500000 756680 842680 742060 796170 1137670 925640 1271040 1271550 846620 1222400 TRUE FALSE FALSE 925000.8555 941224.0957 1016578.874 839662.7511 1024399.58 974105.0791 999471.9206 959700.3688 1016528.868 917678.1766 1.007979572 1.025658144 1.107772746 0.914986073 1.116295022 1.06148877 1.089131186 1.045791862 1.107718255 1 19.80762877 (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK ddPTM_HeLa_A486_30min_R1 4 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.885)DS(0.115)WDADAFSVEDPVRK;AAAAAAAGDS(0.5)DS(0.5)WDADAFSVEDPVRK;AAAAAAAGDS(0.573)DS(0.427)WDADAFSVEDPVRK;AAAAAAAGDS(0.543)DS(0.457)WDADAFSVEDPVRK ;;; 146.94 1.75E-75 4245530000 1686980 2025060 1392940 914440 2142120 1920140 2207550 2364530 1439780 2021220 TRUE FALSE FALSE 1568731.414 1864586.87 1932323.672 2128862.533 1873435.335 1683252.649 1655197.641 1826178.136 1564581.29 1515093.356 1.035402477 1.230674574 1.275382579 1.405103207 1.236514785 1.110989394 1.092472378 1.205323836 1.03266329 1 20.53097526 -6.261023578 5.211955087 1.100506058 1.248522741 0.357000434 0.098383396 0.219522301 20.14862585 0.035479513 0.033264591 5.48E-07 6.261023578 0.148016682 (ac)AAAAAAAGDSDS(ph)WDADAFSVEDPVR ddPTM_HeLa_A485_30min_R1 1 AAAAAAAGDSDSWDADAFSVEDPVR 25 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.419)DS(0.581)WDADAFSVEDPVR 77.562 1.44E-39 268890000 22273 20258 17029 37868 27726 30107 43738 31439 30004 67124 TRUE FALSE FALSE 27227.55201 22626.99688 23328.73574 39936.63295 24965.50209 31683.35597 34393.01899 23728.53596 36025.52759 50391.22213 0.540323311 0.449026555 0.462952371 0.792531542 0.49543355 0.62874752 0.682520041 0.470886296 0.714916727 1 15.62088483 -14 0.18583499 2.779634934 0.498044842 0.606414507 0.105914589 93.56121113 0.90935756 61.45814359 0.306621667 1.00E-14 14 -2.281590092 (ac)AAAAAAAGDSDS(ph)WDADAFSVEDPVR ddPTM_HeLa_A486_30min_R1 1 AAAAAAAGDSDSWDADAFSVEDPVR 25 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.4)DS(0.6)WDADAFSVEDPVR 100.45 5.55E-38 448540000 35085 39708 17248 31941 27017 34617 46594 46606 27379 66588 TRUE FALSE FALSE 32625.72268 36561.39347 23926.88752 74360.26221 23628.27594 30346.3065 34935.68838 35994.8312 29752.23376 49913.93138 0.653639611 0.732488755 0.479362912 1.489769692 0.473380383 0.607972677 0.699918588 0.721137971 0.596070735 1 15.60715492 -10.27301762 2.996470545 1.001828109 0.722507498 0.087945861 0.272824838 48342332.39 62981510.32 807744.2159 0.067075035 5.33E-11 10.27301762 -0.279320611 (ac)AAAAAAAGDSDS(ph)WDADAFSVEDPVRK ddPTM_HeLa_A485_30min_R1 1 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.194)DS(0.806)WDADAFSVEDPVRK 117.22 8.08E-38 841060000 255790 291250 248840 291620 361120 301710 438280 418240 263100 419610 TRUE FALSE FALSE 312689.603 325309.154 340896.2711 307550.4622 325165.6248 317507.0691 344637.8976 315665.9842 315901.7567 315008.9493 0.992637205 1.032698133 1.082179639 0.976322936 1.032242498 1.007930313 1.094057481 1.002085766 1.002834229 1 18.26503329 -7.446600715 25 1.001754219 1.031490043 0.136172767 0.034056429 239.3262957 78437.54709 0.018359634 0.008819681 3.58E-08 7.446600715 0.029735824 (ac)AAAAPDSRVS(ph)EEENLKK ddPTM_HeLa_A485_30min_R1 2 AAAAPDSRVSEEENLKK 17 2 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein 1 0 AAAAPDS(0.044)RVS(0.956)EEENLKK;AAAAPDS(0.144)RVS(0.856)EEENLKK ; 120.75 3.69E-18 881570000 582180 423360 306920 938480 680710 661280 1070990 1077940 532360 1425420 TRUE FALSE FALSE 711683.9325 472868.2693 420462.48 989746.786 612936.1223 695903.5983 842164.2373 813573.5249 639199.7689 1070089.027 0.665069835 0.441896195 0.392922897 0.92492004 0.57278984 0.650323086 0.7870039 0.760285831 0.597333262 1 20.0292994 -13.99999963 0.065022776 2.2459374 0.157950605 0.391507548 0.143584744 361.8628453 1.703193603 69.71685206 10.01667939 1.00E-14 13.99999963 -2.087986796 (ac)AAAITDMADLEELSRLS(ph)PLPPGS(ph)PGSAAR ddPTM_HeLa_A485_30min_R1 4 AAAITDMADLEELSRLSPLPPGSPGSAAR 29 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 2 0 AAAITDMADLEELS(0.001)RLS(0.999)PLPPGS(0.849)PGS(0.151)AAR;AAAITDMADLEELS(0.001)RLS(0.999)PLPPGS(0.886)PGS(0.114)AAR;AAAIT(0.001)DMADLEELS(0.07)RLS(0.884)PLPPGS(0.812)PGS(0.233)AAR;AAAITDMADLEELS(0.06)RLS(0.917)PLPPGS(0.825)PGS(0.198)AAR ;;; 121.64 7.88E-39 314482000 8829.5 8521.2 7584.6 10770.6 10965.7 5203.1 11729.7 13780.3 7814.4 14486.3 TRUE FALSE FALSE 10793.59181 9517.680215 10390.45916 11358.97061 9873.916405 5475.52627 9223.553772 10400.65982 9382.678402 10875.13201 0.992502142 0.875178362 0.955432923 1.044490365 0.907935315 0.503490557 0.84813258 0.956370903 0.862764552 1 13.40874529 -6.008946421 24.92304335 0.818233628 0.961615542 0.183143733 0.130151028 695.8092716 1938398.748 0.043074772 0.046389215 9.80E-07 6.008946421 0.143381914 (ac)AAAITDMADLEELSRLS(ph)PLPPGS(ph)PGSAAR ddPTM_HeLa_A486_30min_R1 4 AAAITDMADLEELSRLSPLPPGSPGSAAR 29 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 2 0 AAAITDMADLEELS(0.002)RLS(0.996)PLPPGS(0.833)PGS(0.169)AAR;AAAITDMADLEELS(0.01)RLS(0.972)PLPPGS(0.841)PGS(0.177)AAR;AAAITDMADLEELS(0.005)RLS(0.974)PLPPGS(0.876)PGS(0.145)AAR;AAAITDMADLEELS(0.032)RLS(0.962)PLPPGS(0.875)PGS(0.131)AAR ;;; 71.907 6.33E-07 328325000 8256 5319.2 5044.3 3678 11505.7 8409.1 13373 9671.4 8169.8 11343.9 TRUE FALSE FALSE 7677.297034 4897.68722 6997.588051 8562.569876 10062.54782 7371.670739 10026.93395 7469.433345 8877.964842 8503.313604 0.902859449 0.575973961 0.822924848 1.00696861 1.183367836 0.866917426 1.179179602 0.878414427 1.04405944 1 13.05380943 -5.170508022 3.679493032 1.025054898 0.732981544 0.480762364 0.123072851 0.182186264 4.606117943 0.032237081 0.059056412 6.75E-06 5.170508022 -0.292073354 (ac)AAAS(ph)PLRDCQAWK ddPTM_HeLa_A486_30min_R1 1 AAASPLRDCQAWK 13 1 F8WBU8;A9UJP8;Q5R3I4 F8WBU8 TTC38 Tetratricopeptide repeat protein 38 1 0 AAAS(1)PLRDCQAWK 71.016 0.0063688 296900000 609560 587910 411110 175660 643510 417890 480880 505800 321480 413200 TRUE FALSE FALSE 566832.9918 541321.8705 570302.8019 408945.3574 562794.9753 366334.9806 360558.7378 390640.3815 349346.1452 309732.0305 1.830075471 1.747710334 1.841278091 1.32031988 1.817038342 1.182748132 1.16409897 1.261220484 1.127898024 1 18.24066106 -6.048976195 0.518830824 1.037674463 1.89818168 0.751426933 0.159889908 0.530527033 0.30108643 0.1337956 0.210569161 8.93E-07 6.048976195 0.860507216 (ac)AADVSVTHRPPLS(ph)PK ddPTM_HeLa_A485_30min_R1 11 AADVSVTHRPPLSPK 15 1 A0A087WZ13;Q8IY67-2;Q8IY67;Q8IY67-3 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 AADVSVTHRPPLS(1)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVTHRPPLS(1)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.002)HRPPLS(0.997)PK;AADVSVT(0.002)HRPPLS(0.998)PK;AADVSVT(0.001)HRPPLS(0.999)PK;AADVSVT(0.002)HRPPLS(0.998)PK;AADVSVTHRPPLS(0.999)PK ;;;;;;;;;; 110.44 1.05E-33 49589100000 4990886 5491819 4890610 6487264 7939510 5683381 8877299 8464571 5101854 10499080 TRUE FALSE FALSE 6101091.372 6134039.46 6699850.154 6841646.806 7149024.507 5980954.041 6980591.548 6388621.69 6125749.301 7881852.577 0.774068192 0.778248438 0.850034949 0.868025219 0.907023373 0.758825921 0.885653656 0.810548234 0.777196635 1 22.91010333 -11.5337688 2.168712917 3.500133395 0.826095106 0.532791869 0.049580111 2507533.756 197035.7713 30828623.17 0.013008219 2.93E-12 11.5337688 -2.674038288 (ac)AADVSVTHRPPLS(ph)PK ddPTM_HeLa_A486_30min_R1 7 AADVSVTHRPPLSPK 15 1 A0A087WZ13;Q8IY67-2;Q8IY67;Q8IY67-3 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 AADVSVTHRPPLS(1)PK;AADVSVTHRPPLS(1)PK;AADVS(0.008)VT(0.006)HRPPLS(0.986)PK;AADVSVT(0.003)HRPPLS(0.997)PK;AADVSVTHRPPLS(1)PK;AADVSVT(0.006)HRPPLS(0.994)PK;AADVSVT(0.001)HRPPLS(0.999)PK ;;;;;; 109.5 1.44E-25 52524530000 5883570 6014790 3618120 801198 6139420 6108090 8067080 7333980 4736830 6592890 TRUE FALSE FALSE 5471162.126 5538156.135 5019152.961 1865229.434 5369356.696 5354535.958 6048611.259 5664192.854 5147422.238 4941987.431 1.107077305 1.120633391 1.015614271 0.377424965 1.086477206 1.083478263 1.223922833 1.146136637 1.041569269 1 22.23665991 -5.966178578 24.99999382 1.112519686 0.903900129 0.17580135 0.202481907 332.0857262 245468.4628 0.066766403 0.075705626 1.08E-06 5.966178578 -0.208619557 (ac)AAFGILSYEHRPLK(ac)RPR ddPTM_HeLa_A486_30min_R1 2 AAFGILSYEHRPLKRPR 17 3 Q93074-3;Q93074;Q93074-2 Q93074-3 MED12 Mediator of RNA polymerase II transcription subunit 12 0 1 ; AAFGILSYEHRPLK(1)RPR;AAFGILSYEHRPLK(1)RPR 62.165 0.00012853 24861000 2534.7 3573.2 2520.74 2330.8 3852.6 3096.3 4161.8 4186.8 2007.81 4821.3 FALSE TRUE FALSE 2357.030619 3290.046619 3496.838036 5426.220192 3369.370984 2714.309987 3120.473621 3233.557037 2181.848587 3614.015099 0.652191691 0.91035774 0.967577041 1.501438163 0.932306837 0.751051092 0.863436797 0.894727042 0.603718725 1 11.81938682 -6.00308529 24.99407947 0.821129014 1.025398304 0.137815883 0.217681958 251.9635804 2041195.39 0.071400207 0.079447199 9.93E-07 6.00308529 0.204269291 (ac)AAGGAAPETPAIS(ph)PSKR ddPTM_HeLa_A485_30min_R1 3 AAGGAAPETPAISPSKR 17 1 H0YNW5;H0YMM5 H0YNW5 DUT 1 0 AAGGAAPET(0.004)PAIS(0.894)PS(0.102)KR;AAGGAAPET(0.009)PAIS(0.707)PS(0.284)KR;AAGGAAPET(0.023)PAIS(0.751)PS(0.226)KR ;; 68.123 6.75E-06 262490000 513620 506970 443130 718430 727210 538310 845830 789540 520590 919210 TRUE FALSE FALSE 627872.997 566255.7314 607062.2272 757676.0117 654806.419 566495.0792 665111.5107 595904.077 625067.6379 690067.8638 0.909871376 0.820579774 0.879713806 1.097973187 0.948901483 0.82092662 0.963834929 0.863544165 0.905806038 1 19.39637872 -5.020057673 24.98724468 0.937609745 0.861455838 0.168843851 0.073858849 1351.221408 1683314.331 0.020758576 0.036594404 9.55E-06 5.020057673 -0.076153907 (ac)AAGGAAPETPAIS(ph)PSKR ddPTM_HeLa_A486_30min_R1 1 AAGGAAPETPAISPSKR 17 1 H0YNW5;H0YMM5 H0YNW5 DUT 1 0 AAGGAAPET(0.032)PAIS(0.867)PS(0.101)KR 48.677 0.0035684 186450000 119100 113910 83547 47124 125070 146210 165680 151640 104660 156370 TRUE FALSE FALSE 110751.705 104883.3567 115898.6359 109707.0535 109382.5544 128172.0968 124225.1116 117114.8823 113732.0131 117213.9342 0.944868081 0.894802802 0.988778652 0.935955731 0.933187296 1.093488565 1.059815221 0.999154948 0.970294307 1 16.83878456 -6.231279301 24.59897942 1.026701837 0.939573032 0.55088218 0.038364126 457.4200613 373078.3726 0.013338174 0.01333604 5.87E-07 6.231279301 -0.087128805 (ac)AAGGDHGS(ph)PDSYR ddPTM_HeLa_A485_30min_R1 2 AAGGDHGSPDSYR 13 0 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;B4DEP1;A0A1W2PRX2;A0A096LP72;A0A096LNY4;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;P30566-2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 AAGGDHGS(0.836)PDS(0.164)YR;AAGGDHGS(0.994)PDS(0.006)YR ; 85.163 3.00E-27 3285300000 19840 29908 26084 0 24573 17476 17277 23398 20173 16681 TRUE FALSE FALSE 24253.33955 33405.48043 35733.55705 0 22126.42584 18391.01634 13585.62781 17659.60381 24221.53606 12522.73369 1.936744816 2.667586907 2.853494926 0 1.766900613 1.468610352 1.084877164 1.410203574 1.934205155 1 13.61226191 -5.226780554 24.99738356 1.280207164 2.504106885 0.525359683 0.542519894 489.018181 352699.6703 0.143842556 0.249128693 5.93E-06 5.226780554 1.223899721 (ac)AAGGDHGS(ph)PDSYR ddPTM_HeLa_A486_30min_R1 3 AAGGDHGSPDSYR 13 0 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;B4DEP1;A0A1W2PRX2;A0A096LP72;A0A096LNY4;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;P30566-2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 AAGGDHGS(0.848)PDS(0.152)YR;AAGGDHGS(0.989)PDS(0.011)YR;AAGGDHGS(0.97)PDS(0.03)YR ;; 87.914 1.54E-21 4811810000 96136 150251 146402 28661.7 149521 91930 96846.8 94382.6 139655 65556 TRUE FALSE FALSE 89397.36285 138344.5636 203092.7752 66725.88608 130766.682 80588.61128 72614.7063 72893.74234 151760.4078 49140.3509 1.819225162 2.81529458 4.132912595 1.357863443 2.661085636 1.639968169 1.477700199 1.483378547 3.088305335 1 15.58462054 -5.290687867 24.99877671 1.849459857 2.911759908 0.293750667 0.785301505 882.8647252 754585.3564 0.218662727 0.324384292 5.12E-06 5.290687867 1.062300051 (ac)AAGGDHGS(ph)PDSYRSPLASR ddPTM_HeLa_A485_30min_R1 2 AAGGDHGSPDSYRSPLASR 19 1 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;B4DEP1;A0A1W2PRX2;A0A096LP72;A0A096LNY4;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;P30566-2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 AAGGDHGS(0.996)PDS(0.003)YRSPLASR;AAGGDHGS(0.995)PDS(0.004)YRS(0.001)PLASR ; 109.05 8.55E-08 1809810000 134411 123029 130835 154584 143631 132468 178205 194443 136294 179370 TRUE FALSE FALSE 164310.2632 137416.1713 179236.311 163028.5325 129330.5933 139403.8196 140130.0459 146755.5494 163646.9556 134656.3601 1.220219106 1.020495217 1.331064577 1.210700575 0.9604492 1.035256111 1.040649293 1.089852342 1.215293177 1 17.03892285 -5.73686983 24.99938617 1.059512885 1.192785647 0.340306088 0.094533712 291.8463665 296950.776 0.02853659 0.036823288 1.83E-06 5.73686983 0.133272762 (ac)AAGGDHGS(ph)PDSYRSPLASR ddPTM_HeLa_A486_30min_R1 3 AAGGDHGSPDSYRSPLASR 19 1 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;B4DEP1;A0A1W2PRX2;A0A096LP72;A0A096LNY4;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;P30566-2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 AAGGDHGS(0.971)PDS(0.023)YRS(0.003)PLAS(0.003)R;AAGGDHGS(0.941)PDS(0.036)YRS(0.013)PLAS(0.01)R;AAGGDHGS(0.96)PDS(0.036)YRS(0.004)PLAS(0.001)R ;; 81.329 7.16E-06 893560000 147394 147391 116667 104531 177641 157668 193034 206154 119862 211290 TRUE FALSE FALSE 137062.4417 135711.2004 161843.5869 243353.4507 155359.6093 138216.5252 144734.8515 159217.2345 130251.7347 158381.6087 0.865393671 0.856862116 1.02185846 1.536500687 0.980919506 0.872680397 0.913836225 1.005276028 0.82239179 1 17.27304529 -5.991119561 24.99961084 0.923070239 1.077374025 0.126180029 0.182449164 452.7692023 1274595.946 0.061418261 0.069541645 1.02E-06 5.991119561 0.154303786 (ac)AALGHLAGEAAAAPGPGT(ph)PCASR ddPTM_HeLa_A485_30min_R1 4 AALGHLAGEAAAAPGPGTPCASR 23 0 A0A3B3IRR6;A0A3B3IT54;A0A3B3ITA3;Q9H7E9;Q9H7E9-2 A0A3B3IRR6 C8orf33 UPF0488 protein C8orf33 1 0 AALGHLAGEAAAAPGPGT(0.915)PCAS(0.085)R;AALGHLAGEAAAAPGPGT(0.823)PCAS(0.177)R;AALGHLAGEAAAAPGPGT(0.833)PCAS(0.167)R;AALGHLAGEAAAAPGPGT(0.846)PCAS(0.154)R ;;; 137.23 1.99E-74 1729080000 28622.2 35786.3 21690.7 28604.7 36091.1 27697.8 44213.7 42445.6 33351.2 42373.4 TRUE FALSE FALSE 34989.10964 39971.19649 29714.99256 30167.30233 32497.74336 29148.01398 34767.0818 32035.75005 40044.47992 31810.4912 1.099923589 1.256541316 0.934125549 0.948344436 1.021604575 0.916301914 1.092943884 1.007081275 1.258845067 1 14.95721503 -10.31404817 13.59549638 0.999999973 1.052472875 0.019970597 0.115985984 8.30E-11 0 0.114909831 0.027869728 4.85E-11 10.31404817 0.052472902 (ac)AALGHLAGEAAAAPGPGT(ph)PCASR ddPTM_HeLa_A486_30min_R1 4 AALGHLAGEAAAAPGPGTPCASR 23 0 A0A3B3IRR6;A0A3B3IT54;A0A3B3ITA3;Q9H7E9;Q9H7E9-2 A0A3B3IRR6 C8orf33 UPF0488 protein C8orf33 1 0 AALGHLAGEAAAAPGPGT(0.971)PCAS(0.029)R;AALGHLAGEAAAAPGPGT(0.925)PCAS(0.075)R;AALGHLAGEAAAAPGPGT(0.857)PCAS(0.143)R;AALGHLAGEAAAAPGPGT(0.878)PCAS(0.122)R ;;; 149.64 1.46E-104 1621850000 17954.8 14505.1 22848.6 0 22770.1 39477.7 39460.4 46253 7474 30844.9 TRUE FALSE FALSE 16696.26124 13355.66305 31696.18983 0 19914.06174 34607.34275 29586.99055 35722.2016 8121.852338 23121.13627 0.722121138 0.577638698 1.370875092 0 0.86129252 1.496783823 1.279651233 1.545001992 0.351273927 1 14.49692468 -6.009472729 24.63906818 1.177825741 0.676356988 0.200091798 0.437422543 575.014008 1495646.22 0.136188987 0.146162609 9.78E-07 6.009472729 -0.501468753 (ac)AALHTTPDS(ph)PAAQLER ddPTM_HeLa_A485_30min_R1 2 AALHTTPDSPAAQLER 16 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 0 AALHTTPDS(1)PAAQLER;AALHTT(0.001)PDS(0.999)PAAQLER ; 126.07 4.09E-68 1245910000 23996 29063.4 39607 44350 35536 25823 52253 35496 21110 56894 TRUE FALSE FALSE 29333.82741 32462.11181 54259.27748 46772.7282 31997.91107 27175.05235 41088.71968 26790.55034 25346.58337 42711.37286 0.686791959 0.760034381 1.27037072 1.095088382 0.749166063 0.636248627 0.962008873 0.627246294 0.593438742 1 15.38233265 -5.788874038 23.49192178 0.746491235 0.961947166 0.181718845 0.197446299 183.3004144 156956.0964 0.064532184 0.073197246 1.63E-06 5.788874038 0.215455931 (ac)AALHTTPDS(ph)PAAQLER ddPTM_HeLa_A486_30min_R1 2 AALHTTPDSPAAQLER 16 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 0 AALHTTPDS(1)PAAQLER;AALHTT(0.003)PDS(0.996)PAAQLER ; 172.9 8.03E-68 1172820000 42113 49066 43227 59240 55020 64457 83617 78824 33394 103755 TRUE FALSE FALSE 39161.09617 45177.83146 59965.65206 137913.7138 48118.87856 56504.95069 62695.14219 60877.49592 36288.61881 77774.07267 0.503523794 0.580885505 0.771023684 1.773260794 0.618700769 0.726526833 0.806118801 0.78274795 0.466590183 1 16.24700167 (ac)AAPRPPPARLS(ph)GVMVPAPIQDLEALR ddPTM_HeLa_A486_30min_R1 1 AAPRPPPARLSGVMVPAPIQDLEALR 26 2 A0A1W2PQD2;Q9UBB4-2;Q9UBB4 A0A1W2PQD2 ATXN10 Ataxin-10 1 0 AAPRPPPARLS(1)GVMVPAPIQDLEALR 40.064 4.41E-07 253020000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AARDS(ph)DS(ph)EEDLVSYGTGLEPLEEGERPK ddPTM_HeLa_A485_30min_R1 1 AARDSDSEEDLVSYGTGLEPLEEGERPK 28 2 K7EQ19;Q9BRR8 K7EQ19 GPATCH1 G patch domain-containing protein 1 2 0 AARDS(1)DS(1)EEDLVSYGTGLEPLEEGERPK 106.88 2.39E-10 198060000 99372 88195 81005 118980 123040 88537 120350 117370 96696 174690 TRUE FALSE FALSE 121476.9586 98508.63806 110972.1204 125479.5761 110789.7056 93172.66042 94636.23933 88584.82347 116102.0003 131142.9979 0.926293897 0.751154386 0.846191731 0.956814913 0.84480077 0.710466147 0.721626323 0.675482678 0.88530842 1 17.00078125 -6.025653208 21.22751562 0.773945811 0.865020352 0.073955056 0.102696045 215.6826833 178472.5791 0.032950513 0.033154032 9.43E-07 6.025653208 0.091074541 (ac)AAS(ph)DTERDGLAPEKT(ph)SPDRDK ddPTM_HeLa_A486_30min_R1 2 AASDTERDGLAPEKTSPDRDK 21 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 2 0 AAS(0.96)DT(0.04)ERDGLAPEKT(0.571)S(0.429)PDRDK;AAS(0.984)DT(0.016)ERDGLAPEKT(0.565)S(0.435)PDRDK ; 68.934 1.32E-05 2128810000 1660210 1496030 676270 1261410 1573530 2604560 3689400 3191300 1185850 3281400 TRUE FALSE FALSE 1543837.852 1377479.134 938139.8551 2936626.228 1376163.195 2283235.868 2766273.098 2464710.656 1288640.433 2459716.082 0.627648802 0.560015501 0.381401684 1.193888291 0.559480505 0.928251795 1.124631057 1.002030549 0.523898039 1 21.23006037 -5.246870577 24.99589248 0.900455619 0.526721342 0.405610646 0.211619691 827.7726062 1420218.568 0.05689249 0.097983956 5.66E-06 5.246870577 -0.373734276 (ac)AAS(ph)DTERDGLAPEKTS(ph)PDRDK ddPTM_HeLa_A486_30min_R1 1 AASDTERDGLAPEKTSPDRDK 21 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 2 0 AAS(0.879)DT(0.122)ERDGLAPEKT(0.177)S(0.822)PDRDK 65.581 0.00088414 1685000000 952430 897290 594770 1160300 1270600 1693700 2506700 2357300 989890 2464100 TRUE FALSE FALSE 885669.5754 826185.4725 825080.8725 2701237.038 1111229.5 1484748.514 1879497.147 1820594.249 1075694.462 1847073.321 0.479498873 0.447294356 0.446696329 1.462441695 0.601616345 0.803838428 1.017554163 0.985664309 0.582377781 1 20.81680971 -5.116440518 20.44111139 0.910733962 0.456417938 0.453059367 0.233436028 4.492722306 772.9774326 0.061204226 0.106009434 7.65E-06 5.116440518 -0.454316024 (ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEKR ddPTM_HeLa_A485_30min_R1 6 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 AASAAAASAAAASAASGS(0.998)PGPGEGS(0.002)AGGEKR;AASAAAASAAAAS(0.003)AAS(0.036)GS(0.954)PGPGEGS(0.007)AGGEKR;AASAAAASAAAASAASGS(0.999)PGPGEGS(0.001)AGGEKR;AASAAAASAAAASAAS(0.001)GS(0.998)PGPGEGS(0.001)AGGEKR;AASAAAASAAAASAASGS(1)PGPGEGSAGGEKR;AASAAAASAAAASAAS(0.01)GS(0.987)PGPGEGS(0.003)AGGEKR ;;;;; 202.58 3.62E-148 11532940000 2032450 2405870 2174660 2465500 3223840 2673150 3357860 3825290 2303950 3272280 TRUE FALSE FALSE 2484561.491 2687215.568 2979157.229 2600184.022 2902863.17 2813112.001 2640425.78 2887131.63 2766331.632 2456560.818 1.011398323 1.09389336 1.212734978 1.058465153 1.181677713 1.14514242 1.074846493 1.175273825 1.126099387 1 21.22820853 -4.344760804 3.88737945 1.128303582 1.008544189 0.220467026 0.06077258 0.2839365 7.16567509 0.014100044 0.078665328 4.52E-05 4.344760804 -0.119759393 (ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEKR ddPTM_HeLa_A486_30min_R1 7 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 AASAAAASAAAASAAS(0.003)GS(0.997)PGPGEGS(0.001)AGGEKR;AASAAAASAAAASAAS(0.005)GS(0.994)PGPGEGS(0.001)AGGEKR;AASAAAASAAAASAASGS(0.999)PGPGEGS(0.001)AGGEKR;AASAAAASAAAAS(0.008)AAS(0.103)GS(0.885)PGPGEGS(0.003)AGGEKR;AASAAAASAAAASAASGS(0.999)PGPGEGS(0.001)AGGEKR;AASAAAASAAAASAAS(0.001)GS(0.99)PGPGEGS(0.008)AGGEKR;AASAAAASAAAASAAS(0.003)GS(0.996)PGPGEGS(0.001)AGGEKR ;;;;;; 207.53 4.72E-193 11334810000 4653849.5 4943915.3 3673114.9 1931248.9 5517489.5 4960666.2 6142624.1 6051315.4 3920221.2 5842124.3 TRUE FALSE FALSE 4327638.683 4552141.446 5095443.359 4496045.039 4825434.518 4348669.641 4605674.58 4673562.983 4260029.13 4379218.349 0.988221718 1.039487206 1.163550879 1.026677521 1.101894022 0.993024164 1.051711564 1.067213966 0.972782992 1 22.06224195 -7.760377857 24.99833391 0.986391475 1.055722953 0.233767644 0.048858921 39.3562133 927006.9395 0.037621613 0.012358612 1.74E-08 7.760377857 0.069331478 (ac)AASDTERDGLAPEKT(ph)SPDRDK ddPTM_HeLa_A486_30min_R1 2 AASDTERDGLAPEKTSPDRDK 21 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 AASDTERDGLAPEKT(0.867)S(0.132)PDRDK;AASDTERDGLAPEKT(0.5)S(0.5)PDRDK ; 68.689 9.63E-10 912040000 169893 172930 123827 214460 322380 252710 455290 485990 142616 358080 TRUE FALSE FALSE 157984.378 159226.397 171776.1306 499273.7182 281944.0943 221533.2096 341371.6264 375340.6861 154978.0697 268414.4373 0.588583757 0.593211001 0.639966063 1.860085185 1.050405847 0.825340141 1.271807992 1.398362509 0.577383509 1 18.03410275 -5.04326771 24.97914622 1.153697145 0.597319095 0.363264432 0.323594838 455.6638458 263061.5444 0.086799782 0.150355646 9.05E-06 5.04326771 -0.556378051 (ac)AATLGAGT(ph)PPRPQAR ddPTM_HeLa_A486_30min_R1 1 AATLGAGTPPRPQAR 15 1 A0A075B730 A0A075B730 EPPK1 1 0 AAT(0.002)LGAGT(0.998)PPRPQAR 40.405 2.56E-06 465900000 45198 45891 39527 0 67547 65690 49744 53825 52101 49561 TRUE FALSE FALSE 42029.8536 42254.43003 54832.91297 0 59074.62541 57585.83569 37297.52506 41570.22249 56617.15663 37150.60301 1.13133705 1.137382077 1.475962933 0 1.590139072 1.550064629 1.003954769 1.118964946 1.523990246 1 15.18109801 (ac)ACGLVASNLNLKPGECLR ddPTM_HeLa_A485_30min_R1 1 ACGLVASNLNLKPGECLR 18 1 P09382;F8WEI7 P09382 LGALS1 Galectin-1 0 0 110.38 3.21E-18 29457000 7830 7503.9 7834.6 7996.5 11591 10060 11897 12212 9040.4 12687 FALSE FALSE TRUE 9571.756487 8381.41583 10732.94456 8433.328547 10436.95934 10586.72604 9355.10876 9216.987852 10854.72536 9524.364387 1.004975881 0.879997393 1.126893526 0.885447911 1.095816888 1.111541476 0.982229195 0.967727344 1.139679764 1 13.2174071 -4.930948752 1.077912271 1.038509714 0.950718836 0.082389784 0.086935667 1.838246422 3.421440673 0.029672751 0.144377951 1.17E-05 4.930948752 -0.087790878 (ac)ACRPRS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 ACRPRSPPR 9 2 F8W8D3;Q14493;E7EUV9;Q14493-2 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 ACRPRS(1)PPR;ACRPRS(1)PPR ; 58.132 0.0044116 1100463000 8966.3 10658.8 19337.3 9467.9 13576.2 17132.9 13358.3 14534.1 14260.9 13955.9 TRUE FALSE FALSE 10960.8225 11905.25394 26490.97196 9985.107403 12224.50586 18029.95215 10504.19008 10969.58919 17122.93182 10476.95097 1.046184385 1.136328115 2.528500137 0.953054704 1.166799949 1.720915962 1.002599908 1.047021144 1.634343033 1 13.3549313 -6.393311314 1.001373867 1.205043251 1.449029287 0.032572063 0.468041041 2.235415077 4.680679872 0.293187381 0.234529666 4.04E-07 6.393311314 0.243986036 (ac)ACRPRS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 ACRPRSPPR 9 2 F8W8D3;Q14493;E7EUV9;Q14493-2 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 ACRPRS(1)PPR 42.425 0.024254 654630000 5938.6 5235.4 10276 0 12791 6148.6 4424.2 8406.9 0 6313.9 TRUE FALSE FALSE 5522.334807 4820.527837 14255.1424 0 11186.63351 5390.048246 3317.218366 6492.832391 0 4732.858343 1.166807541 1.018523583 3.011952052 0 2.363610465 1.138856872 0.700891116 1.37186282 0 1 12.20849603 -6.52005131 21.91058718 0.816418547 1.510781063 0.155351858 0.81523207 46.49210771 360314.2681 0.291301438 0.230913681 3.02E-07 6.52005131 0.694362517 (ac)ADEAALALQPGGS(ph)PSAAGADR ddPTM_HeLa_A485_30min_R1 2 ADEAALALQPGGSPSAAGADR 21 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 ADEAALALQPGGS(0.922)PS(0.078)AAGADR;ADEAALALQPGGS(0.835)PS(0.165)AAGADR ; 50.843 0.00019796 295320000 11194.1 28964 14249.1 18325.7 26658 23922.9 23673 28563 20771 31689 TRUE FALSE FALSE 13684.18893 32351.08785 19520.43504 19326.78659 24003.83592 25175.46605 18615.07016 21557.87946 24939.54918 23789.51549 0.57521932 1.359888471 0.820547819 0.812407743 1.009009029 1.058258881 0.782490512 0.906192456 1.048342039 1 14.53803827 -9.983777304 0.008613544 1.952962938 2.86E-06 0.023016162 0.197655592 58097.26291 96.17160035 11462.49466 10357.61889 1.04E-10 9.983777304 -1.952960079 (ac)ADEAALALQPGGS(ph)PSAAGADR ddPTM_HeLa_A486_30min_R1 2 ADEAALALQPGGSPSAAGADR 21 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 ADEAALALQPGGS(0.785)PS(0.215)AAGADR;ADEAALALQPGGS(0.924)PS(0.076)AAGADR ; 80.142 8.01E-28 289300000 7845.3 11033 7184 9380.3 15694 8702.5 9806.7 9112.1 6884.3 10800 TRUE FALSE FALSE 7295.384983 10158.7049 9965.837194 21837.81245 13725.51218 7628.874031 7352.959935 7037.473746 7481.036667 8095.609704 0.901153249 1.254841237 1.231017497 2.6974883 1.695426618 0.942347063 0.908265122 0.869295087 0.924085639 1 12.98292402 -6.26916109 22.9375068 0.919346039 1.58461822 0.332921897 0.442871711 244.6490039 726730.7967 0.168890558 0.152078016 5.38E-07 6.26916109 0.66527218 (ac)ADELS(ph)EKQVYDAHTK ddPTM_HeLa_A485_30min_R1 3 ADELSEKQVYDAHTK 15 1 C9JKI3;Q03135-2 C9JKI3 CAV1 Caveolin;Caveolin-1 1 0 ADELS(1)EKQVYDAHTK;ADELS(1)EKQVYDAHTK;ADELS(1)EKQVYDAHTK ;; 126.07 1.81E-67 1499460000 812210 694980 447310 1328360 1102640 1286010 2212970 2542770 880000 3035350 TRUE FALSE FALSE 992883.3124 776251.8655 612788.5831 1400924.943 992857.29 1353343.495 1740150.881 1919151.671 1056607.928 2278693.106 0.435724894 0.340656609 0.268921068 0.614793163 0.435713474 0.593912138 0.763661801 0.842215946 0.463690317 1 21.11977521 -6.343930849 0.172272695 1.122907347 0.016286382 0.630695299 0.134431099 4.480458259 0.383588536 0.706234976 1.486375545 4.53E-07 6.343930849 -1.106620965 (ac)ADELS(ph)EKQVYDAHTK ddPTM_HeLa_A486_30min_R1 4 ADELSEKQVYDAHTK 15 1 C9JKI3;Q03135-2 C9JKI3 CAV1 Caveolin;Caveolin-1 1 0 ADELS(1)EKQVYDAHTK;ADELS(1)EKQVYDAHTK;ADELS(1)EKQVYDAHTK;ADELS(1)EKQVYDAHTK ;;; 126.84 9.59E-68 1813580000 1045610 986440 867950 969250 2527560 1640030 2478820 2389780 1276460 2374520 TRUE FALSE FALSE 972318.1385 908270.9018 1204043.485 2256462.983 2210529.856 1437699.773 1858593.018 1845679.263 1387104.581 1779924.736 0.546269243 0.510286128 0.676457526 1.267729437 1.241923218 0.807730655 1.044197532 1.036942307 0.779305188 1 20.76338481 -5.073029535 5.500953794 1.026701794 0.541374634 0.667398274 0.147140905 0.127576544 6.992173708 0.042168851 0.075733518 8.45E-06 5.073029535 -0.485327161 (ac)ADESETAVKPPAPPLPQMMEGNGNGHEHCS(ph)DCENEEDNSYNR ddPTM_HeLa_A485_30min_R1 4 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNR 42 1 P30419;B7Z8J4 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.905)DCENEEDNS(0.092)Y(0.003)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.893)DCENEEDNS(0.103)Y(0.003)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.956)DCENEEDNS(0.027)Y(0.017)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.966)DCENEEDNS(0.032)Y(0.002)NR ;;; 76.192 3.19E-11 3895800000 242172 146148 248723 287654 293867 181870 281334 146172 226446 371395 TRUE FALSE FALSE 296042.3259 163238.7373 340735.9879 303367.8096 264608.5697 191392.432 221224.6926 110323.0878 271891.6351 278813.0615 1.06179504 0.585477367 1.222094783 1.088068859 0.949053707 0.686454325 0.793451682 0.395688377 0.975175387 1 18.08893862 -6.201221435 5.748702672 0.733980786 0.980754345 0.17922778 0.219622553 0.34095761 23.62109629 0.07225022 0.071798311 6.29E-07 6.201221435 0.246773559 (ac)ADESETAVKPPAPPLPQMMEGNGNGHEHCS(ph)DCENEEDNSYNR ddPTM_HeLa_A486_30min_R1 6 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNR 42 1 P30419;B7Z8J4 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.943)DCENEEDNS(0.055)Y(0.002)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.991)DCENEEDNS(0.009)Y(0.001)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.718)DCENEEDNS(0.145)Y(0.136)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.771)DCENEEDNS(0.117)Y(0.112)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.97)DCENEEDNS(0.029)Y(0.001)NR;ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.913)DCENEEDNS(0.053)Y(0.034)NR ;;;;; 76.192 6.25E-11 4223570000 213032 332520 245420.9 108779.6 353819 299933 365283 291173 247264 266879 TRUE FALSE FALSE 198099.5569 306169.9042 340454.4451 253244.4062 309439.7218 262930.316 273885.3298 224879.2642 268697.0426 200050.7613 0.990246453 1.53046108 1.701840287 1.265900737 1.546806019 1.314317997 1.369079168 1.124111014 1.343144314 1 17.61000659 -7.894223851 0.619870818 1.01193705 1.42341793 0.257436927 0.192094274 1.026116822 0.941241784 0.192823775 0.085284689 1.28E-08 7.894223851 0.41148088 (ac)ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNS(ph)YNR ddPTM_HeLa_A486_30min_R1 1 ADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNR 42 1 P30419;B7Z8J4 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 ADESETAVKPPAPPLPQMMEGNGNGHEHCS(0.432)DCENEEDNS(0.533)Y(0.035)NR 42.83 5.72E-07 266930000 18685 26374 15167 12191 30745 26753 23055 29569 16609 24287 TRUE FALSE FALSE 17375.27799 24284.02819 21040.06859 28381.2641 26888.67541 23452.48686 17286.39515 22836.78419 18048.68149 18205.37712 0.954403629 1.33389317 1.155706276 1.55894953 1.476963385 1.288217581 0.949521399 1.254397755 0.991392893 1 14.15207701 -6.673941827 7.651543812 1.07066087 1.311996841 0.32009871 0.173476534 0.307416809 23.16122856 0.068297649 0.052680706 2.12E-07 6.673941827 0.241335971 (ac)ADGDS(ph)GS(ph)ERGGGGGPCGFQPASR ddPTM_HeLa_A485_30min_R1 2 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 0 ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR ; 64.87 0.0008849 2208240000 10088 9100.4 20930.1 9687.1 37173 22574.9 28961 35083 29896 33549 TRUE FALSE FALSE 12332.0408 10164.61262 28673.01496 10216.28174 33471.9256 23756.88686 22773.24576 26478.83924 35895.85298 25185.85172 0.489641602 0.403584232 1.138457229 0.405635746 1.328997167 0.943263191 0.904207887 1.051337852 1.425238796 1 14.6203259 -4.419763849 0.477000782 1.133407669 5.33E-17 0.418085916 0.265348654 3.98362595 0.783079764 0.176130244 2.511674424 3.80E-05 4.419763849 -1.133407669 (ac)ADGDS(ph)GS(ph)ERGGGGGPCGFQPASR ddPTM_HeLa_A486_30min_R1 4 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 0 ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR ;;; 111.95 1.19E-09 4096260000 59199.6 97509.1 52756.9 0 97146.8 84565.2 42953.1 65932.4 71816 40797.3 TRUE FALSE FALSE 55050.01375 89782.12379 73185.78456 0 84961.74249 74132.40542 32205.78007 50921.03181 78041.0687 30581.39053 1.800114801 2.935841773 2.393147705 0 2.778217112 2.424101852 1.053116928 1.665098641 2.551913675 1 14.90036639 -11.22307197 0.175643716 1.53E-31 2.192632633 0.088133488 0.852692932 119.1933134 2.816537685 57.38381392 3.397748047 5.98E-12 11.22307197 2.192632633 (ac)ADGDS(ph)GSERGGGGGPCGFQPASR ddPTM_HeLa_A485_30min_R1 1 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 ADGDS(0.927)GS(0.073)ERGGGGGPCGFQPASR 127.71 1.09E-06 689650000 0 0 0 0 0 0 0 0 0 10738 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 8061.214218 0 0 0 0 0 0 0 0 0 1 12.97678145 (ac)ADGDS(ph)GSERGGGGGPCGFQPASR ddPTM_HeLa_A486_30min_R1 2 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 ADGDS(0.876)GS(0.124)ERGGGGGPCGFQPASR;ADGDS(0.917)GS(0.083)ERGGGGGPCGFQPASR ; 88.73 1.15E-08 691170000 28748.2 31522 14984 11271 35595.6 28214.8 34190 32786 25683 36883 TRUE FALSE FALSE 26733.09964 29024.08192 20786.20609 26239.4576 31130.86793 24733.94484 25635.30038 25321.34351 27909.22312 27647.25673 0.96693498 1.049799703 0.751836115 0.949079971 1.126002056 0.894625643 0.927227631 0.915871826 1.009475312 1 14.75484872 -7.7802354 24.46989036 1.004737746 0.948090163 0.057586089 0.092328677 744.4766898 969173.2428 0.089868859 0.023383345 1.66E-08 7.7802354 -0.056647583 (ac)ADGGS(ph)PFLGRR ddPTM_HeLa_A485_30min_R1 3 ADGGSPFLGRR 11 1 O60504-2;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 ADGGS(1)PFLGRR;ADGGS(1)PFLGRR;ADGGS(1)PFLGRR ;; 76.927 0.00012295 5322300000 98975 132189 125213 137510 141681 119451 136213 160085 102167 170436 TRUE FALSE FALSE 120991.6473 147647.3537 171534.4992 145021.8231 127574.7422 125705.2697 107109.9798 120823.9027 122670.9798 127949.4418 0.945620751 1.153950744 1.34064281 1.133430682 0.997071502 0.982460477 0.83712737 0.944309729 0.95874572 1 16.96521433 -5.856688555 2.838310499 0.937406647 1.160666784 0.480803196 0.097618391 0.225835149 3.680478135 0.033880603 0.040107927 1.39E-06 5.856688555 0.223260137 (ac)ADGGS(ph)PFLGRR ddPTM_HeLa_A486_30min_R1 2 ADGGSPFLGRR 11 1 O60504-2;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 ADGGS(1)PFLGRR;ADGGS(1)PFLGRR ; 115.57 5.98E-10 4792500000 98716 102575 74350 63114 103177 102066 111920 102463 63539 146158 TRUE FALSE FALSE 91796.51817 94446.58343 103140.3112 146932.5816 90235.57857 89474.13465 83916.43223 79134.41165 69046.61168 109559.0855 0.837872257 0.862060714 0.94141267 1.341126397 0.823624788 0.816674713 0.765946812 0.722298943 0.6302226 1 16.7413496 -5.978460134 24.99999879 0.774109561 0.994727552 0.290233265 0.155348454 302.5706883 351173.5204 0.049841319 0.056510548 1.05E-06 5.978460134 0.22061799 (ac)ADHNPDSDS(ph)TPR ddPTM_HeLa_A485_30min_R1 1 ADHNPDSDSTPR 12 0 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2;H3BQ71 Q96BT3 CENPT Centromere protein T 1 0 ADHNPDS(0.027)DS(0.596)T(0.377)PR 42.3 0.0010783 170410000 0 7104.9 4357.6 5280.4 9414.7 6310.6 6699.8 6064.5 8065.1 5140.2 TRUE FALSE FALSE 0 7935.756251 5969.657575 5568.854881 8477.339411 6641.013258 5268.332998 4577.171866 9683.691593 3858.842738 0 2.056511962 1.547007219 1.443141185 2.196860558 1.720985722 1.365262426 1.186151439 2.509480756 1 11.91395253 -4.253296833 24.89617255 1.672987889 5.20E-06 0.559248582 0.4446207 707.218095 2162297.688 0.105418544 1.150995677 5.58E-05 4.253296833 -1.672982687 (ac)ADHNPDSDST(ph)PR ddPTM_HeLa_A486_30min_R1 1 ADHNPDSDSTPR 12 0 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2;H3BQ71 Q96BT3 CENPT Centromere protein T 1 0 ADHNPDS(0.019)DS(0.267)T(0.714)PR 78.157 7.39E-13 247850000 6403.6 3432.1 7877.4 0 7329.1 3497.9 2654.8 3698.1 2974.3 4261.4 TRUE FALSE FALSE 5954.740708 3160.127897 10927.74024 0 6409.815937 3066.364662 1990.54096 2856.123359 3232.114719 3194.317703 1.864166705 0.989296679 3.420993546 0 2.00663069 0.959943546 0.62315059 0.894126266 1.011832579 1 11.64129209 -5.279216538 24.99852916 0.957121005 1.981267062 0.349679379 0.721694373 959.3578347 1349062.343 0.195814618 0.291127104 5.26E-06 5.279216538 1.024146057 (ac)ADHS(ph)FS(ph)DGVPSDSVEAAK ddPTM_HeLa_A486_30min_R1 1 ADHSFSDGVPSDSVEAAK 18 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22;C9J1B1 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 2 0 ADHS(0.907)FS(0.907)DGVPS(0.181)DS(0.006)VEAAK 66.498 0.00044296 125570000 91866 117980 91644 52370 141470 124220 150180 150910 85269 158540 TRUE FALSE FALSE 85426.6678 108630.8351 127131.0111 121920.0066 123725.5134 108894.9994 112603.3756 116551.0873 92660.18558 118840.5521 0.718834323 0.914088947 1.069761196 1.025912489 1.041105172 0.916311793 0.947516429 0.980734987 0.779701743 1 16.85866769 -4.3098088 3.595279887 0.972145908 0.701676287 0.486956398 0.077010144 0.20774514 4.742214757 0.019994743 0.138235054 4.90E-05 4.3098088 -0.270469621 (ac)ADHS(ph)FSDGVPSDSVEAAK ddPTM_HeLa_A485_30min_R1 3 ADHSFSDGVPSDSVEAAK 18 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22;C9J1B1 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 ADHS(0.996)FS(0.004)DGVPSDSVEAAK;ADHS(0.997)FS(0.003)DGVPSDSVEAAK;ADHS(0.998)FS(0.002)DGVPSDSVEAAK ;; 100.19 2.11E-144 3804300000 1494030 1381360 1226430 1727190 2043020 1573680 2320240 2344090 1267390 2145870 TRUE FALSE FALSE 1826371.819 1542898.036 1680137.493 1821542.016 1839609.755 1656075.451 1824501.769 1769198.252 1521743.548 1610944.101 1.133727619 0.957760133 1.042952075 1.130729499 1.141945121 1.028015467 1.132566778 1.098236898 0.9446284 1 20.619475 -7.758071056 24.99556859 0.972314178 1.081059001 0.373942233 0.057356582 89.33939417 663007.1329 0.043852858 0.015042261 1.75E-08 7.758071056 0.108744823 (ac)ADHS(ph)FSDGVPSDSVEAAK ddPTM_HeLa_A486_30min_R1 4 ADHSFSDGVPSDSVEAAK 18 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22;C9J1B1 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 ADHS(0.987)FS(0.013)DGVPSDSVEAAK;ADHS(0.995)FS(0.005)DGVPSDSVEAAK;ADHS(0.997)FS(0.003)DGVPSDSVEAAK;ADHS(0.998)FS(0.002)DGVPSDSVEAAK ;;; 110.38 3.73E-145 5952480000 3167300 3647250 2531990 1078257 3947350 3753770 4781700 4637430 2806300 4079270 TRUE FALSE FALSE 2945288.626 3358228.627 3512444.337 2510236.788 3452236.555 3290668.023 3585268.084 3581588.423 3049552.344 3057794.24 0.963206938 1.098251996 1.148685641 0.820930576 1.128995702 1.07615744 1.172501418 1.171298047 0.997304627 1 21.5440599 (ac)ADHSFS(ph)DGVPS(ph)DSVEAAK ddPTM_HeLa_A485_30min_R1 1 ADHSFSDGVPSDSVEAAK 18 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22;C9J1B1 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 2 0 ADHS(0.295)FS(0.929)DGVPS(0.655)DS(0.12)VEAAK 44.089 5.19E-15 0 115130 116410 98435 157630 150850 117900 164830 181960 111840 174380 TRUE FALSE FALSE 140740.2713 130023.1369 134850.2027 166240.9278 135830.8443 124073.0617 129612.724 137334.0247 134285.2621 130910.2752 1.075089569 0.99322331 1.030096396 1.269884487 1.037587341 0.947771758 0.99008824 1.049069865 1.025780917 1 16.99821881 -5.992626295 24.99943219 1.003480511 1.089729534 0.257261101 0.071700996 283.0692126 959695.7886 0.023768517 0.026898235 1.02E-06 5.992626295 0.086249023 (ac)ADILSQSETLASQDLSGDFKKPALPVS(ph)PAAR ddPTM_HeLa_A485_30min_R1 3 ADILSQSETLASQDLSGDFKKPALPVSPAAR 31 2 A0A087WWF4;A0A087X0M4 A0A087WWF4 SLC4A1AP 1 0 ADILSQSETLASQDLSGDFKKPALPVS(1)PAAR;ADILSQSET(0.001)LASQDLS(0.01)GDFKKPALPVS(0.988)PAAR;ADILSQSETLASQDLSGDFKKPALPVS(1)PAAR ;; 196.19 4.93E-110 796639000 163159 182931 130408 169715 258575 235823 295192 359701 152669 225994 TRUE FALSE FALSE 199453.1567 204323.1892 178651.3459 178986.1007 232830.3651 248170.3276 232121.8177 271483.7658 183308.2679 169657.8549 1.175619937 1.204324959 1.053009576 1.054982693 1.372352404 1.462769453 1.368176073 1.600183887 1.080458479 1 17.3722687 -5.769045263 24.96349272 1.35414755 1.122938997 0.212458405 0.170907631 208.1254275 683093.299 0.050524005 0.058375331 1.70E-06 5.769045263 -0.231208552 (ac)ADILSQSETLASQDLSGDFKKPALPVS(ph)PAAR ddPTM_HeLa_A486_30min_R1 3 ADILSQSETLASQDLSGDFKKPALPVSPAAR 31 2 A0A087WWF4;A0A087X0M4 A0A087WWF4 SLC4A1AP 1 0 ADILSQSETLASQDLSGDFKKPALPVS(1)PAAR;ADILSQSETLASQDLSGDFKKPALPVS(1)PAAR;ADILSQSETLASQDLSGDFKKPALPVS(1)PAAR ;; 173.22 6.07E-109 1601030000 479050 469310 283368 236829 548510 458960 617050 662120 344875 664860 TRUE FALSE FALSE 445471.0688 432120.1664 393095.6785 551349.8807 479710.7611 402338.1816 462657.5635 511369.73 374769.0427 498374.7285 0.893847628 0.867058745 0.78875524 1.106295824 0.962550334 0.807300528 0.928332712 1.02607476 0.751982437 1 18.92687139 -8.760558678 0.009174865 1.875797438 3.23E-06 0.033317648 0.105629382 15269.90653 49.35315852 5185.606082 4901.784474 1.74E-09 8.760558678 -1.875794208 (ac)ADKPDMGEIAS(ph)FDK ddPTM_HeLa_A485_30min_R1 1 ADKPDMGEIASFDK 14 1 P63313 P63313 TMSB10 Thymosin beta-10 1 0 ADKPDMGEIAS(1)FDK 63.682 3.37E-08 79358000 80003 55504 39816 133250 79113 62824 108330 92268 56525 188340 TRUE FALSE FALSE 97799.39134 61994.70998 54545.59528 140529.1101 71236.23194 66113.3675 85184.41053 69639.12833 67869.04902 141390.3041 0.691698005 0.438465073 0.385780309 0.993909101 0.503826853 0.467594775 0.60247703 0.492531145 0.480012045 1 17.10932366 -10.20492315 4.933388526 1.000052558 0.560396097 0.385717692 0.16588604 9.59E-05 1.55E-05 0.16067606 0.038965024 6.24E-11 10.20492315 -0.439656461 (ac)ADKPDMGEIAS(ph)FDK ddPTM_HeLa_A486_30min_R1 2 ADKPDMGEIASFDK 14 1 P63313 P63313 TMSB10 Thymosin beta-10 1 0 ADKPDMGEIAS(1)FDK;ADKPDMGEIAS(1)FDK ; 71.98 5.80E-08 255290000 349120 331210 124242 199502 246590 425530 491430 428900 268210 589440 TRUE FALSE FALSE 324648.4909 304963.7134 172351.8297 464450.7383 215660.3828 373032.4351 368469.0162 331248.8328 291458.6588 441840.3874 0.734764182 0.690212398 0.390077129 1.051173119 0.488095677 0.844269663 0.833941456 0.749702477 0.659646938 1 18.75316577 -14 0.148260323 1.981854803 0.628590504 0.196325427 0.174504931 220.0224846 1.945847392 63.91407375 0.881328028 1.00E-14 14 -1.353264299 (ac)ADKPDMGEIASFDK ddPTM_HeLa_A485_30min_R1 2 ADKPDMGEIASFDK 14 1 P63313 P63313 TMSB10 Thymosin beta-10 0 0 ; ; 122.7 4.16E-22 90343000 123435 108754 86578 167215 157539 141301 214776 200515 124536 260940 FALSE FALSE TRUE 150892.6899 121471.8343 118606.805 176349.532 141853.864 148699.3019 168887.353 151338.3819 149529.2329 195892.4602 0.770283296 0.620094485 0.605468964 0.900236445 0.72414152 0.759086397 0.862143203 0.772558483 0.763323064 1 17.57970234 -14 0.090937366 1.792266641 0.553702817 0.491020573 0.081208427 182.281676 1.147475491 28.00979201 1.908465704 1.00E-14 14 -1.238563824 (ac)ADKPDMGEIASFDK(ac)AK ddPTM_HeLa_A485_30min_R1 1 ADKPDMGEIASFDKAK 16 2 P63313 P63313 TMSB10 Thymosin beta-10 0 1 ADKPDMGEIASFDK(1)AK 111.12 7.75E-19 34513000 40686 35081 26432 60214 50403 50745 81071 95694 58289 130070 FALSE TRUE FALSE 49736.46033 39183.41779 36210.29673 63503.33835 45384.70034 53401.92973 63749.51856 72224.89646 69987.06764 97645.94276 0.509355114 0.401280552 0.370832578 0.650342826 0.464788388 0.546893483 0.652863977 0.739661008 0.716743222 1 16.57527248 -7.687531791 0.366307061 1.032635607 0.408967304 0.842153058 0.071016772 0.467931342 0.192553856 0.109515285 0.076857359 2.05E-08 7.687531791 -0.623668303 (ac)ADKPDMGEIASFDK(ac)AK ddPTM_HeLa_A486_30min_R1 2 ADKPDMGEIASFDKAK 16 2 P63313 P63313 TMSB10 Thymosin beta-10 0 1 ; ADKPDMGEIASFDK(1)AK;ADKPDMGEIASFDK(1)AK 104.17 8.38E-33 106651000 105798 109244 56933 53763 118349 148769 164074 163532 102059 194778 FALSE TRUE FALSE 98382.10654 100587.1076 78978.98232 125162.981 103504.5649 130415.3934 123020.9498 126299.3335 110905.5563 146004.321 0.673830102 0.688932402 0.540935924 0.857255321 0.708914395 0.893229683 0.842584308 0.865038326 0.759604617 1 17.15565154 -5.628560084 1.32087536 0.857545396 0.643613439 0.524486208 0.08734274 0.352744561 1.274974875 0.031386159 0.051007246 2.35E-06 5.628560084 -0.213931957 (ac)ADLEEQLS(ph)DEEKVR ddPTM_HeLa_A485_30min_R1 1 ADLEEQLSDEEKVR 14 1 C9JUG7;F8W9N7;P47755-2;P47755 C9JUG7 CAPZA2 F-actin-capping protein subunit alpha-2 1 0 ADLEEQLS(1)DEEKVR 77.078 3.51E-08 148280000 106280 91888 84068 158030 174170 112800 187710 196010 91342 240750 TRUE FALSE FALSE 129921.6193 102633.5023 115168.2516 166662.7787 156829.0233 118706.0336 147604.2251 147938.2402 109673.5016 180735.4557 0.718849652 0.5678659 0.637220025 0.922136601 0.867726936 0.656794391 0.816686601 0.81853469 0.606817855 1 17.46352003 -14 0.171027036 1.942040137 0.682894717 0.307249614 0.114701834 181.1239894 1.711317784 58.80429368 0.43686274 1.00E-14 14 -1.25914542 (ac)ADLEEQLS(ph)DEEKVR ddPTM_HeLa_A486_30min_R1 1 ADLEEQLSDEEKVR 14 1 C9JUG7;F8W9N7;P47755-2;P47755 C9JUG7 CAPZA2 F-actin-capping protein subunit alpha-2 1 0 ADLEEQLS(1)DEEKVR 84.566 0.00019717 262820000 204430 226430 165540 174930 281730 290330 393770 401100 184020 433360 TRUE FALSE FALSE 190100.5127 208486.8622 229641.5213 407245.8805 246392.7964 254512.0365 295244.5811 309778.286 199971.0018 324843.8353 0.58520585 0.64180643 0.706928981 1.253666643 0.758496144 0.783490431 0.908881589 0.953622179 0.615591186 1 18.3093868 -5.01516625 24.63164508 0.891781943 0.628721417 0.351733237 0.159570238 614.2903425 997679.4978 0.042414865 0.076835148 9.66E-06 5.01516625 -0.263060526 (ac)ADVLDLHEAGGEDFAMDEDGDES(ph)IHKLK ddPTM_HeLa_A485_30min_R1 6 ADVLDLHEAGGEDFAMDEDGDESIHKLK 28 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK ;;;;; 286.26 2.46E-244 1127995000 406752 297462 239899 573234 491214 423400 701354 704760 317190 719461 TRUE FALSE FALSE 497232.5791 332247.5933 328647.6231 604548.3219 442307.0094 445568.5693 551503.9884 531916.505 380847.1236 540112.6134 0.920609086 0.615145037 0.608479815 1.119300507 0.818916275 0.824954941 1.02109074 0.984825186 0.705125402 1 19.04290071 -5.243235387 24.9995901 0.919684442 0.704784685 0.326977553 0.137795976 955.2914115 1311902.331 0.03678852 0.063565182 5.71E-06 5.243235387 -0.214899756 (ac)ADVLDLHEAGGEDFAMDEDGDES(ph)IHKLK ddPTM_HeLa_A486_30min_R1 4 ADVLDLHEAGGEDFAMDEDGDESIHKLK 28 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK;ADVLDLHEAGGEDFAMDEDGDES(1)IHKLK ;;; 297.73 1.20E-223 1032040000 397947 406806 221976 384961 418687 560504 763434 700197 321184 672578 TRUE FALSE FALSE 370052.9703 374569.211 307931.0519 896208.6629 366171.3724 491354.7153 572414.7384 540777.4283 349024.4877 504160.0911 0.733998936 0.742956885 0.610780301 1.777627144 0.726299798 0.974600576 1.135382884 1.072630377 0.692289005 1 18.94352239 (ac)AEAPAS(ph)PAPLS(ph)PLEVELDPEFEPQSRPR ddPTM_HeLa_A485_30min_R1 1 AEAPASPAPLSPLEVELDPEFEPQSRPR 28 1 O43524 O43524 FOXO3 Forkhead box protein O3 2 0 AEAPAS(1)PAPLS(1)PLEVELDPEFEPQSRPR 66.828 0.002164 54295000 0 0 1399.8 756.77 1510.4 1782.2 831.95 1128.6 1625.6 1805.2 TRUE FALSE FALSE 0 0 1917.644271 798.1104289 1360.019273 1875.513236 654.1970861 851.8090804 1951.843009 1355.196862 0 0 1.41503004 0.588925824 1.003558457 1.383941543 0.482732143 0.628550068 1.440265295 1 10.40428672 -4.74361697 24.98270279 0.961311328 9.81E-07 0.588880591 0.330997719 166.1024253 232831.708 0.083040256 0.218689234 1.80E-05 4.74361697 -0.961310348 (ac)AEAPAS(ph)PAPLS(ph)PLEVELDPEFEPQSRPR ddPTM_HeLa_A486_30min_R1 2 AEAPASPAPLSPLEVELDPEFEPQSRPR 28 1 O43524 O43524 FOXO3 Forkhead box protein O3 2 0 AEAPAS(1)PAPLS(0.999)PLEVELDPEFEPQS(0.001)RPR;AEAPAS(1)PAPLS(1)PLEVELDPEFEPQSRPR ; 67.571 0.00084203 139500000 3946 773.5 2051.4 733.43 5659.4 1099 2893.55 4286 1381 1913.1 TRUE FALSE FALSE 3669.405777 712.205043 2845.757018 1707.462105 4949.54528 963.4165538 2169.553185 3310.171363 1500.706192 1434.047308 2.55877596 0.496639852 1.984423389 1.190659538 3.451451883 0.671816438 1.512888155 2.30827208 1.046483044 1 10.4858769 -7.878755069 10.06645714 1.002498387 1.727441613 0.111444242 0.838471946 0.722630391 58.88109322 0.766612415 0.198052373 1.32E-08 7.878755069 0.724943226 (ac)AENHCELLS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 AENHCELLSPAR 12 0 H3BSS5;Q9NXV2 H3BSS5 KCTD5 BTB/POZ domain-containing protein KCTD5 1 0 AENHCELLS(1)PAR 61.212 0.0025674 230430000 45720 48890 39363 21814 69404 53630 50937 44353 37866 44903 TRUE FALSE FALSE 42515.2641 45015.77835 54605.40778 50784.09442 60698.70315 47013.67587 38192.02384 34254.79012 41148.25537 33658.99653 1.263117397 1.337407023 1.62231241 1.508782188 1.803342625 1.396764037 1.134675058 1.017700872 1.222503925 1 15.03870455 -6.709885961 3.719607325 1.089338591 1.511274515 0.632374744 0.149330133 0.156477311 4.427120852 0.065803137 0.047704501 1.95E-07 6.709885961 0.421935924 (ac)AENVVEPGPPSAK(ac)RPK ddPTM_HeLa_A486_30min_R1 2 AENVVEPGPPSAKRPK 16 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 ; AENVVEPGPPSAK(1)RPK;AENVVEPGPPSAK(1)RPK 127.37 1.35E-10 43783000 32644 44672 36464 17654.2 63395 53558 55329 60991 46482 54138 FALSE TRUE FALSE 30355.82417 41132.02803 50583.83734 41099.86979 55443.40797 46950.5585 41485.09899 47104.68072 50511.09719 40581.49242 0.748021385 1.013566174 1.246475532 1.012773739 1.366223977 1.156945092 1.02226647 1.160742938 1.244683085 1 15.3085343 -4.367674422 2.838743201 1.155236352 0.718599033 0.54607007 0.111753369 0.239364326 3.00133307 0.028021302 0.211442308 4.29E-05 4.367674422 -0.436637318 (ac)AEPPS(ph)PVHCVAAAAPTATVSEKEPFGK ddPTM_HeLa_A485_30min_R1 2 AEPPSPVHCVAAAAPTATVSEKEPFGK 27 1 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein 1 0 AEPPS(1)PVHCVAAAAPTATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK ; 127.67 1.79E-28 1664070000 1489930 1347570 1078470 1912770 1983960 1713300 2389540 2446520 1497660 2700320 TRUE FALSE FALSE 1821359.788 1505156.589 1477440.932 2017259.782 1786429.976 1803005.739 1878995.258 1846507.134 1798226.625 2027179.92 0.898469727 0.742487914 0.728815887 0.995106434 0.881238986 0.889415745 0.926901081 0.910874815 0.887058227 1 20.95104271 -5.25658026 24.99688098 0.920009021 0.785180849 0.538724117 0.057903374 314.3169357 1616942.983 0.015491174 0.025775969 5.54E-06 5.25658026 -0.134828172 (ac)AEPPS(ph)PVHCVAAAAPTATVSEKEPFGK ddPTM_HeLa_A486_30min_R1 3 AEPPSPVHCVAAAAPTATVSEKEPFGK 27 1 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein 1 0 AEPPS(1)PVHCVAAAAPTATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK ;; 134.77 1.44E-20 2242860000 1789300 1897660 1069440 847820 2176060 2135140 2684730 2573500 1512770 2403430 TRUE FALSE FALSE 1663879.31 1747282.51 1483555.809 1973767.806 1903118.264 1871728.135 2012982.158 1987570.229 1643898.122 1801595.484 0.92355877 0.969852847 0.823467766 1.095566582 1.056351595 1.038928079 1.117333039 1.103227804 0.912467941 1 20.78084369 -5.27333204 24.99968479 1.053644404 0.912049097 0.490486936 0.065287861 595.3993834 1251593.933 0.018067592 0.027042734 5.33E-06 5.27333204 -0.141595307 (ac)AESSESFTMASS(ph)PAQR ddPTM_HeLa_A485_30min_R1 3 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AESSESFTMAS(0.085)S(0.915)PAQR;AESSESFT(0.001)MAS(0.022)S(0.977)PAQR;AESSESFTMAS(0.001)S(0.999)PAQR ;; 122.63 6.63E-92 695990000 355882 474111 422950 383907 622380 415479 482632 559339 407146 612296 TRUE FALSE FALSE 435046.7231 529554.1572 579416.8054 404878.8673 560413.6619 437232.838 379513.7305 422160.2332 488856.4676 459661.8757 0.946449436 1.152051508 1.260528306 0.880818899 1.219186736 0.951205356 0.825636735 0.918414721 1.06351319 1 18.81021349 -6.412599285 9.359636022 0.937098333 1.09263255 0.24713968 0.121114203 0.490857732 38.41401382 0.042127344 0.037117153 3.87E-07 6.412599285 0.155534217 (ac)AESSESFTMASS(ph)PAQR ddPTM_HeLa_A486_30min_R1 4 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AESSESFTMAS(0.003)S(0.997)PAQR;AESSESFTMAS(0.025)S(0.974)PAQR;AESSESFTMAS(0.022)S(0.977)PAQR;AESSESFTMAS(0.009)S(0.991)PAQR ;;; 101.2 3.39E-104 1254380000 408696 420115 336522 111229 522868 393207 449042 516905 380655 456437 TRUE FALSE FALSE 380048.5209 386823.5574 466832.3308 258946.7332 457285.0199 344697.1182 336686.9421 399217.0155 413650.4819 342142.2043 1.110791116 1.13059293 1.364439478 0.756839495 1.336534967 1.007467403 0.984055571 1.16681605 1.209001628 1 18.38423655 (ac)AESSESFTMASS(ph)PAQRR ddPTM_HeLa_A485_30min_R1 1 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AESSES(0.031)FT(0.16)MAS(0.086)S(0.722)PAQRR 44.567 0.0036576 2431900000 52797 48173 55897 37264 157580 61645 72054 122770 89025 73081 TRUE FALSE FALSE 64541.5105 53806.4133 76575.62637 39299.63796 141890.7819 64872.63688 56659.07427 92660.465 106891.5009 54863.25166 1.176406949 0.980736863 1.395754427 0.716319882 2.58626271 1.182442435 1.032732705 1.688934983 1.948326023 1 15.74355251 (ac)AESSESFTMASS(ph)PAQRR ddPTM_HeLa_A486_30min_R1 1 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AESSES(0.001)FT(0.004)MAS(0.021)S(0.973)PAQRR 53.491 0.0018278 2252200000 87936 140830 184360 29495 388820 158210 103890 200530 170660 93832 TRUE FALSE FALSE 81772.1405 129670.1179 255749.1293 68665.85059 340050.57 138691.6588 77895.62316 154873.6965 185452.9462 70335.85646 1.162595362 1.843584829 3.636113104 0.976256693 4.83466879 1.971848581 1.107480979 2.201916694 2.636677159 1 16.10197273 -6.502945675 24.99114846 1.794247565 2.531106294 0.08751644 1.151905583 2068.729529 2593682.085 0.404853256 0.352263706 3.14E-07 6.502945675 0.736858729 (ac)AHS(ph)PVAVQVPGMQNNIADPEELFTK ddPTM_HeLa_A485_30min_R1 2 AHSPVAVQVPGMQNNIADPEELFTK 25 0 Q8NBY1;B4E0Y9;Q9P289-3;Q9P289 Q8NBY1 STK26 Serine/threonine-protein kinase 26 1 0 AHS(1)PVAVQVPGMQNNIADPEELFTK;AHS(1)PVAVQVPGMQNNIADPEELFTK ; 42.806 0.0068425 83407000 65242 79881 73853 75947 101038 78879 94375 100716 75373 115031 TRUE FALSE FALSE 79754.85782 89222.38808 101174.298 80095.7923 90978.30195 83008.98247 74211.01028 76015.24308 90499.66974 86355.88869 0.923560154 1.033194023 1.171596975 0.92750817 1.053527482 0.961242872 0.859362475 0.880255467 1.047984927 1 16.39800694 -6.429521099 5.368413897 0.933493983 1.024989148 0.153251421 0.082521655 0.367677512 16.49630055 0.02988196 0.026032384 3.72E-07 6.429521099 0.091495165 (ac)AHS(ph)PVQSGLPGMQNLK ddPTM_HeLa_A485_30min_R1 13 AHSPVQSGLPGMQNLK 16 0 B4DR80;Q9Y6E0-2 B4DR80 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit 1 0 AHS(0.998)PVQS(0.002)GLPGMQNLK;AHS(0.968)PVQS(0.032)GLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.99)PVQS(0.01)GLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.999)PVQS(0.001)GLPGMQNLK ;;;;;;;;;;;; 135.66 3.52E-59 9522970000 3590572 3811208 3697647 4118980 5120260 4029109 5018660 4628760 3916471 5526570 TRUE FALSE FALSE 4389282.354 4256895.622 5065560.497 4343989.448 4610468.936 4240066.917 3946382.292 3493549.352 4702470.806 4148897.808 1.057939375 1.026030483 1.220941255 1.047022522 1.111251506 1.021974296 0.951188117 0.842042758 1.13342652 1 21.98429669 -6.476146415 3.563582853 0.969324055 1.093141712 0.28098034 0.083123738 0.288152663 7.44851269 0.031298719 0.025942358 3.34E-07 6.476146415 0.123817657 (ac)AHS(ph)PVQSGLPGMQNLK ddPTM_HeLa_A486_30min_R1 9 AHSPVQSGLPGMQNLK 16 0 B4DR80;Q9Y6E0-2 B4DR80 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit 1 0 AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.999)PVQS(0.001)GLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK ;;;;;;;; 122.51 2.28E-58 8762090000 2448160 3029430 2325620 895737 3379730 2948540 3392300 3339000 2501610 3152210 TRUE FALSE FALSE 2276556.626 2789366.934 3226162.346 2085321.004 2955812.749 2584779.113 2543510.66 2578782.59 2718451.569 2362876.099 0.963468473 1.180496487 1.365354006 0.882535062 1.250938528 1.093912252 1.076446904 1.091374445 1.150484179 1 21.17211255 -14 0.256128537 0.237402553 1.130847085 0.064942033 0.129199687 551.7446024 5.449083704 220.7891204 0.173182117 1.00E-14 14 0.893444533 (ac)AHS(ph)PVQSGLPGMQNLKADPEELFTK ddPTM_HeLa_A485_30min_R1 3 AHSPVQSGLPGMQNLKADPEELFTK 25 1 B4DR80;Q9Y6E0-2 B4DR80 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit 1 0 AHS(0.98)PVQS(0.02)GLPGMQNLKADPEELFTK;AHS(0.969)PVQS(0.031)GLPGMQNLKADPEELFTK;AHS(0.992)PVQS(0.008)GLPGMQNLKADPEELFTK ;; 72.532 3.57E-06 496900000 130962 322786 163879 92259 297919 496670 604200 1249460 179507 147382 TRUE FALSE FALSE 160094.0451 360533.0148 224504.6617 97298.87556 268257.1383 522674.8732 475107.7341 943027.9759 215532.4084 110642.3798 1.446950485 3.258543567 2.029101888 0.8793997 2.424542376 4.724002451 4.294084556 8.523207635 1.948009513 1 16.75554457 -6.204651926 4.536032903 4.58671496 1.978074309 0.203278984 1.965346204 0.283921891 12.32308749 0.645021576 0.634667608 6.24E-07 6.204651926 -2.608640651 (ac)AK(ac)HHPDLIFCR ddPTM_HeLa_A485_30min_R1 1 AKHHPDLIFCR 11 1 Q7RTV0 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A 0 1 AK(1)HHPDLIFCR 50.207 0.0015116 57450000 5655.2 5815.2 10450 9032.3 11791 8099.5 10098 8304.3 7239.1 16864 FALSE TRUE FALSE 6913.17973 6495.237054 14315.88986 9525.711678 10617.04664 8523.577296 7940.479807 6267.657404 8691.920969 12660.11516 0.546059782 0.513047233 1.130786701 0.752419039 0.838621648 0.673262225 0.62720439 0.495071121 0.686559392 1 13.62800291 -6.420539263 7.950368088 0.658758069 0.76310163 0.004534025 0.198911983 1.005732223 69.92505592 0.071786976 0.063166983 3.80E-07 6.420539263 0.104343561 (ac)AK(ac)ISSPTETER ddPTM_HeLa_A485_30min_R1 2 AKISSPTETER 11 1 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 1 ; AK(1)ISSPTETER;AK(1)ISSPTETER 64.82 2.37E-09 105646000 10501.9 9621.2 10452.7 15217.7 15097.7 10096.4 16465.3 21835.1 10354.9 27737.4 FALSE TRUE FALSE 12838.01142 10746.31565 14319.5887 16049.00442 13594.51998 10625.03189 12947.35415 16480.00749 12433.03345 20822.97665 0.616531039 0.516079705 0.687682119 0.770735361 0.65286151 0.510255189 0.6217821 0.791433798 0.597082428 1 14.3458887 -14 0.285042228 3.709586266 0.620666914 0.603524984 0.087633023 172.7662527 1.645054675 277.4313054 0.103474369 1.00E-14 14 -3.088919352 (ac)AK(ac)ISSPTETER ddPTM_HeLa_A486_30min_R1 2 AKISSPTETER 11 1 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 1 ; AK(1)ISSPTETER;AK(1)ISSPTETER 60.398 2.83E-06 99284000 7187.5 10043.7 8592.9 7180.4 12368.1 12512.4 13262.6 9573.8 8134.1 8984.5 FALSE TRUE FALSE 6683.693366 9247.800633 11920.30101 16716.33408 10816.77757 10968.7473 9944.157203 7394.054735 8839.170337 6734.722721 0.992422946 1.373152395 1.769976508 2.482111702 1.6061207 1.628685806 1.476550352 1.097900395 1.312477247 1 12.71740283 -7.053062323 2.203018077 1.142514508 1.676122154 0.280987798 0.357707004 0.466531022 4.431092288 0.230180918 0.117703882 8.85E-08 7.053062323 0.533607646 (ac)AKPCGVRLS(ph)GEAR ddPTM_HeLa_A485_30min_R1 1 AKPCGVRLSGEAR 13 2 H0YM70;A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 H0YM70 PSME2 Proteasome activator complex subunit 2 1 0 AKPCGVRLS(1)GEAR 52.372 7.96E-06 2701500000 893020 1172900 1121000 1003400 1641300 1256700 1539500 1712600 1164600 1464800 TRUE FALSE FALSE 1091669.218 1310060.452 1535704.549 1058213.201 1477886.409 1322498.869 1210573.248 1292582.165 1398324.538 1099652.318 0.992740342 1.1913406 1.396536454 0.962316165 1.34395789 1.202651827 1.100869092 1.175446224 1.271606048 1 20.06861602 -9.874163469 5.110715148 0.999999674 1.184868005 0.14761784 0.130989205 4.65E-07 1.02E-07 0.121221678 0.029400524 1.34E-10 9.874163469 0.184868331 (ac)AKPCGVRLS(ph)GEAR ddPTM_HeLa_A486_30min_R1 1 AKPCGVRLSGEAR 13 2 H0YM70;A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 H0YM70 PSME2 Proteasome activator complex subunit 2 1 0 AKPCGVRLS(1)GEAR 51.495 6.13E-06 4331500000 2086300 2564200 2095300 834120 3020700 2383100 2654500 2946200 2036900 2412900 TRUE FALSE FALSE 1940061.144 2361003.453 2906656.274 1941873.514 2641815.639 2089097.352 1990316.024 2275414.575 2213460.132 1808694.135 1.072630859 1.305363581 1.607046884 1.073632892 1.460620449 1.155030755 1.100416032 1.258042768 1.223789081 1 20.78651703 -6.364258213 24.99996344 1.160641571 1.308018306 0.184549184 0.163093659 68.55673618 16650.43058 0.056488289 0.049817996 4.32E-07 6.364258213 0.147376735 (ac)AKPCGVRLS(ph)GEARK ddPTM_HeLa_A486_30min_R1 1 AKPCGVRLSGEARK 14 3 H0YM70;A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 H0YM70 PSME2 Proteasome activator complex subunit 2 1 0 AKPCGVRLS(1)GEARK 48.883 0.0003321 151740000 142490 138080 131680 81385 244170 133360 199540 212290 112640 162390 TRUE FALSE FALSE 132502.1868 127138.0379 182670.0225 189468.393 213543.9218 116907.3991 149612.9815 163956.2013 122403.7259 121726.487 1.088523871 1.044456642 1.50065961 1.556509167 1.754292981 0.960410523 1.229091426 1.346922969 1.005563611 1 16.8932836 -6.297274908 24.99867359 1.137623788 1.385275471 0.276630736 0.224273228 1028.142616 717223.6092 0.086705127 0.07646899 5.04E-07 6.297274908 0.247651684 (ac)AKS(ph)PENSTLEEILGQYQR ddPTM_HeLa_A485_30min_R1 3 AKSPENSTLEEILGQYQR 18 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 AKS(0.987)PENS(0.006)T(0.006)LEEILGQYQR;AKS(0.98)PENS(0.009)T(0.011)LEEILGQYQR;AKS(0.996)PENS(0.003)T(0.001)LEEILGQYQR ;; 60.628 6.51E-06 100412000 50218 56343 48944 61886 79380 63999 87245 96907 50632 85776 TRUE FALSE FALSE 61388.82085 62931.82373 67050.42233 65266.67548 71476.64848 67349.88868 68604.39302 73140.40631 60793.37798 64393.62179 0.953336979 0.977299024 1.041258753 1.013558077 1.109995781 1.045909312 1.065391123 1.135833088 0.944090056 1 15.97463018 -4.681477718 1.451269166 1.055205666 0.941963999 0.265522588 0.051720129 0.699537733 2.296144861 0.014788161 0.092751664 2.08E-05 4.681477718 -0.113241667 (ac)AKS(ph)PENSTLEEILGQYQR ddPTM_HeLa_A486_30min_R1 2 AKSPENSTLEEILGQYQR 18 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 AKS(0.919)PENS(0.041)T(0.041)LEEILGQYQR;AKS(0.962)PENS(0.029)T(0.009)LEEILGQYQR ; 62.088 5.12E-06 59667000 70734 52271 45793 36534 85197 62916 86111 91282 49722 86086 TRUE FALSE FALSE 65775.91187 48128.85559 63525.27598 85052.99833 74510.79783 55154.0636 64565.11701 70499.08127 54031.94299 64529.50527 1.019315298 0.745842625 0.984437672 1.318048201 1.154677965 0.854710777 1.000551867 1.092509248 0.837321513 1 15.97767134 -4.990266642 24.82825901 1.045322863 0.878219189 0.149198937 0.144793647 332.7135587 848683.998 0.039208669 0.081464107 1.02E-05 4.990266642 -0.167103674 (ac)AQK(ac)RPACTLKPECVQQLLVCSQEAK ddPTM_HeLa_A485_30min_R1 2 AQKRPACTLKPECVQQLLVCSQEAK 25 3 P32320 P32320 CDA Cytidine deaminase 0 1 ; AQK(0.997)RPACTLK(0.003)PECVQQLLVCSQEAK;AQK(0.887)RPACTLK(0.113)PECVQQLLVCSQEAK 99.6 6.24E-61 176006000 66558.9 57495.9 47988.6 76686.5 69592.6 74246.9 101327.3 87184.3 51333 117815.4 FALSE TRUE FALSE 81364.69768 64219.54536 65741.58011 80875.68931 62663.71639 78134.35288 79677.89459 65802.21373 61635.06225 88446.18901 0.919934466 0.726086065 0.743294661 0.914405586 0.708495381 0.883411188 0.900862948 0.743980204 0.696865099 1 16.43251236 (ac)AQK(ac)RPACTLKPECVQQLLVCSQEAK ddPTM_HeLa_A486_30min_R1 2 AQKRPACTLKPECVQQLLVCSQEAK 25 3 P32320 P32320 CDA Cytidine deaminase 0 1 ; AQK(0.999)RPACTLK(0.001)PECVQQLLVCSQEAK;AQK(0.952)RPACTLK(0.048)PECVQQLLVCSQEAK 122.39 2.69E-72 183384000 107899 138138 86763 72163 154772 160884 190743 186243 125240 183017 FALSE TRUE FALSE 100335.8373 127191.4418 120359.9572 167999.1109 135359.0526 141035.7678 143017.0839 143839.5346 136095.904 137188.352 0.73137286 0.927130037 0.877333647 1.224587281 0.986665782 1.028044771 1.042487076 1.048482123 0.992036876 1 17.06579847 -4.461101549 1.39490378 1.040814775 0.685582457 0.591746681 0.077238108 0.584426391 1.361600558 0.022126639 0.2638698 3.46E-05 4.461101549 -0.355232318 (ac)AQQT(ph)SPDTLTVPEVDNPHCPNPWLNEDLVK ddPTM_HeLa_A485_30min_R1 1 AQQTSPDTLTVPEVDNPHCPNPWLNEDLVK 30 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 AQQT(0.25)S(0.25)PDT(0.25)LT(0.25)VPEVDNPHCPNPWLNEDLVK 59.573 0.0014891 54599000 22194 21518 21894 26991 28846 26570 27484 39593 23432 36986 TRUE FALSE FALSE 27130.97873 24034.34292 29993.50169 28465.44999 25973.99096 27961.16411 21611.81888 29882.75467 28134.58747 27766.07088 0.977127043 0.865601151 1.080221318 1.025188263 0.935457922 1.007026318 0.778353515 1.076232745 1.013272191 1 14.76103542 (ac)AQQT(ph)SPDTLTVPEVDNPHCPNPWLNEDLVK ddPTM_HeLa_A486_30min_R1 1 AQQTSPDTLTVPEVDNPHCPNPWLNEDLVK 30 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 AQQT(0.486)S(0.486)PDT(0.022)LT(0.005)VPEVDNPHCPNPWLNEDLVK 68.444 0.00041155 57543000 28293 33612 25471 12248 37788 35307 38073 37503 28735 38857 TRUE FALSE FALSE 26309.80681 30948.46271 35334.05334 28513.96298 33048.27668 30951.18132 28546.7327 28964.38558 31225.77294 29126.95428 0.903280396 1.062536866 1.213104981 0.9789545 1.134628645 1.062630202 0.980079566 0.994418617 1.072057608 1 14.83006723 -6.684411877 8.91406985 1.011255822 1.066307444 0.072565511 0.080948882 0.756460956 79.59416124 0.031090453 0.024028049 2.07E-07 6.684411877 0.055051622 (ac)AQQTS(ph)PDTLTVPEVDNPHCPNPWLNEDLVK ddPTM_HeLa_A486_30min_R1 1 AQQTSPDTLTVPEVDNPHCPNPWLNEDLVK 30 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 AQQT(0.056)S(0.315)PDT(0.315)LT(0.315)VPEVDNPHCPNPWLNEDLVK 85.982 6.14E-05 84198000 30768 33524 28669 9866.6 28761 31731 37851 41661 27867 38701 TRUE FALSE FALSE 28611.32209 30867.43615 39770.40458 22969.94343 25153.52719 27816.35184 28380.27945 32175.69975 30282.534 29010.0177 0.986256623 1.064026795 1.370919694 0.791793499 0.86706349 0.958853322 0.978292387 1.109123755 1.04386472 1 14.82426356 -5.27563052 24.99548492 0.965012783 1.132763644 0.301220887 0.12285373 1072.614515 1889241.338 0.036826349 0.054916201 5.30E-06 5.27563052 0.167750861 (ac)AQS(ph)SPQLDIQVLHDLR ddPTM_HeLa_A485_30min_R1 2 AQSSPQLDIQVLHDLR 16 0 F6SS63;Q8N5C8-2;Q8N5C8;A0A0A0MQY2 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 0 AQS(0.5)S(0.5)PQLDIQVLHDLR;AQS(0.5)S(0.5)PQLDIQVLHDLR ; 50.207 0.0097955 25769000 7680 9746.9 10070.5 9953.1 13376.7 9341.7 13953.3 11585.6 10019.8 14795.8 TRUE FALSE FALSE 9388.389504 10886.71517 13795.99702 10496.81265 12044.86878 9830.816967 10972.06347 8744.213434 12030.68195 11107.47936 0.845231326 0.980124727 1.242045704 0.945022026 1.084392632 0.885062817 0.987808585 0.787236524 1.083115401 1 13.43924384 -6.263917744 24.98131472 0.937794695 1.025424538 0.075168464 0.120135595 523.4891786 5276621.633 0.040866126 0.037761348 5.45E-07 6.263917744 0.087629843 (ac)AQS(ph)SPQLDIQVLHDLR ddPTM_HeLa_A486_30min_R1 1 AQSSPQLDIQVLHDLR 16 0 F6SS63;Q8N5C8-2;Q8N5C8;A0A0A0MQY2 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 0 AQS(0.5)S(0.5)PQLDIQVLHDLR 52.555 0.0063597 13456000 7789.4 9841.8 5705.5 6085.3 13693 9845.8 16380 16854 10168 11802 TRUE FALSE FALSE 7243.403285 9061.899925 7914.822399 14166.88593 11975.49626 8631.125301 12281.55075 13016.71212 11049.37043 8846.702382 0.818768731 1.02432517 0.894663577 1.601374763 1.353667812 0.975631928 1.388263131 1.471363177 1.248981818 1 13.11092407 -5.230857105 24.83076146 1.304448931 0.923759642 0.460299653 0.187441233 572.2268705 464609.1511 0.050942995 0.088222277 5.88E-06 5.230857105 -0.380689289 (ac)AS(ph)ESDTEEFYDAPEDVHLGGGYPVGSPGK ddPTM_HeLa_A485_30min_R1 2 ASESDTEEFYDAPEDVHLGGGYPVGSPGK 29 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 AS(0.333)ES(0.333)DT(0.333)EEFY(0.001)DAPEDVHLGGGYPVGSPGK;AS(0.332)ES(0.332)DT(0.332)EEFY(0.004)DAPEDVHLGGGYPVGSPGK ; 78.752 5.26E-30 219420000 235220 296650 323620 316310 398680 343400 426460 464620 312720 418120 TRUE FALSE FALSE 287543.8775 331340.637 443340.505 333589.2144 358986.0193 361379.893 335343.3371 350671.2165 375480.0356 313890.3789 0.916064642 1.055593479 1.412405523 1.062757054 1.143666845 1.151293309 1.068345383 1.117177333 1.196213904 1 18.25990128 -9.054067826 14.40587835 1.000006239 1.128876216 0.087641827 0.120198268 0 0 0.116879837 0.028347524 8.83E-10 9.054067826 0.128869977 (ac)AS(ph)ESDTEEFYDAPEDVHLGGGYPVGSPGK ddPTM_HeLa_A486_30min_R1 2 ASESDTEEFYDAPEDVHLGGGYPVGSPGK 29 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 AS(0.323)ES(0.323)DT(0.323)EEFY(0.03)DAPEDVHLGGGYPVGSPGK;AS(0.328)ES(0.328)DT(0.328)EEFY(0.017)DAPEDVHLGGGYPVGSPGK ; 71.506 1.91E-14 184370000 177763 240083 201753 91229 277141 215369 277476 289112 197642 237658 TRUE FALSE FALSE 165302.7317 221057.9487 279877.1647 212385.7225 242379.3915 188798.9625 208048.57 223287.5089 214773.7677 178146.8899 0.927901305 1.240874589 1.571047156 1.192194388 1.360559209 1.059793761 1.167848454 1.253389879 1.205599311 1 17.44270777 -6.25965996 24.94875268 1.155070787 1.271213667 0.113413175 0.163834779 394.2500278 5527700.176 0.056953277 0.054201474 5.50E-07 6.25965996 0.11614288 (ac)AS(ph)FVTEVLAHSGR ddPTM_HeLa_A485_30min_R1 2 ASFVTEVLAHSGR 13 0 F5H3C1;O43264-2;O43264 F5H3C1 ZW10 Centromere/kinetochore protein zw10 homolog 1 0 AS(0.986)FVT(0.014)EVLAHSGR;AS(0.973)FVT(0.027)EVLAHSGR ; 61.353 0.00020863 2813000 2757.3 3675.9 3251.9 5780.1 5166.9 3699.2 5254.6 6833.5 3143.4 5594 TRUE FALSE FALSE 3370.651872 4105.764529 4454.913133 6095.852227 4652.465294 3892.884392 4131.911784 5157.57341 3774.251547 4199.51875 0.802628128 0.977675008 1.060815155 1.451559712 1.107856774 0.926983453 0.983901259 1.228134393 0.898734301 1 12.03600829 -4.436850402 2.483523181 1.094553769 0.790048177 0.238321668 0.153009537 0.547573805 5.377900542 0.042300346 0.297183406 3.66E-05 4.436850402 -0.304505592 (ac)AS(ph)FVTEVLAHSGR ddPTM_HeLa_A486_30min_R1 2 ASFVTEVLAHSGR 13 0 F5H3C1;O43264-2;O43264 F5H3C1 ZW10 Centromere/kinetochore protein zw10 homolog 1 0 AS(0.996)FVT(0.004)EVLAHSGR;AS(0.985)FVT(0.015)EVLAHSGR ; 59.542 0.00026733 2359500 2471.8 1747.3 1528.2 955.59 2468.4 1828.1 1471.3 1512.6 1210.3 3077.6 TRUE FALSE FALSE 2298.539584 1608.837584 2119.959967 2224.661813 2158.790255 1602.567609 1103.165178 1168.214 1315.209778 2306.948928 0.996354777 0.697387604 0.91894534 0.96433076 0.93577722 0.694669739 0.478192284 0.50638919 0.570107887 1 11.17177035 -6.416325292 4.15222437 0.595990399 0.894355741 0.386594562 0.155998409 0.213484403 6.314706907 0.055344641 0.047761707 3.83E-07 6.416325292 0.298365343 (ac)AS(ph)GADSKGDDLSTAILK ddPTM_HeLa_A485_30min_R1 2 ASGADSKGDDLSTAILK 17 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 AS(0.853)GADS(0.146)KGDDLSTAILK;AS(0.976)GADS(0.023)KGDDLSTAILK ; 58.674 0.00042949 112166000 337040 285270 212528 475460 392880 375520 589590 578850 302760 705910 TRUE FALSE FALSE 412013.3852 318629.845 291150.9512 501433.1759 353763.4877 395181.6465 463619.28 436886.1299 363521.1549 529939.6283 0.777472307 0.601256875 0.549403999 0.946208113 0.667554319 0.745710691 0.874853012 0.82440736 0.685967109 1 19.01546849 -14 0.083231832 1.83081195 0.503650936 0.342907533 0.112663198 269.7270191 1.577248005 40.8085615 3.465008799 1.00E-14 14 -1.327161014 (ac)AS(ph)GADSKGDDLSTAILK ddPTM_HeLa_A486_30min_R1 2 ASGADSKGDDLSTAILK 17 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 AS(0.791)GADS(0.209)KGDDLSTAILK;AS(0.81)GADS(0.181)KGDDLS(0.008)T(0.001)AILK ; 62.891 3.90E-08 166549000 675220 689330 347790 379020 664230 804660 974250 959820 520910 1038240 TRUE FALSE FALSE 627890.5648 634704.9803 482463.6021 882377.7146 580916.0797 705389.2304 730482.3454 741289.9387 566062.8982 778257.9462 0.80678979 0.815545776 0.619927627 1.13378568 0.746431286 0.906369455 0.938612126 0.95249903 0.727346121 1 19.56988888 -5.236843449 24.99489658 0.90662684 0.754233572 0.285794687 0.120752119 1078.52322 1096016.409 0.031264818 0.054120606 5.80E-06 5.236843449 -0.152393268 (ac)AS(ph)GVAVSDGVIK ddPTM_HeLa_A485_30min_R1 11 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(0.996)GVAVS(0.004)DGVIK;AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK;AS(1)GVAVSDGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(0.978)GVAVS(0.022)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK ;;;;;;;;;; 72.643 2.43E-24 83370300000 12145245 11259076 9779739 12026667 14462787 9892572 16660636 16051853 8661437 12994569 TRUE FALSE FALSE 14846912.85 12575727 13397671.42 12683653.37 13022821.14 10410531.77 13100955.01 12115110.88 10399707.96 9755262.096 1.521938899 1.289122411 1.373378931 1.300185812 1.334953486 1.067170894 1.342962894 1.241905216 1.066061358 1 23.2177492 -1.000000021 0.08458058 0.780663454 2.591394628 0.659123785 0.090216015 111.4158849 0.684258054 2.069635725 23.47898338 0.099999995 1.000000021 1.810731174 (ac)AS(ph)GVAVSDGVIK ddPTM_HeLa_A486_30min_R1 17 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(0.999)GVAVS(0.001)DGVIK;AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK;AS(1)GVAVSDGVIK;AS(0.998)GVAVS(0.002)DGVIK ;;;;;;;;;;;;;;;; 88.681 8.41E-34 1.22E+11 17354386 23476360 16752120 9839000 22495860 21620970 27056440 26856880 13379471 18361350 TRUE FALSE FALSE 16137933.16 21616007.73 23238989.5 22905689.24 19674219.47 18953594.55 20286632.54 20742154.71 14539214.32 13763548.45 1.172512541 1.570525785 1.688444633 1.664228474 1.429443835 1.377086339 1.473939124 1.507035397 1.056356533 1 23.71434913 -7.78359473 5.614325183 1.012782819 1.495953138 0.630617962 0.13990391 0.113917377 10.36140036 0.131017617 0.037160047 1.65E-08 7.78359473 0.483170318 (ac)AS(ph)GVAVSDGVIKVFNDMK ddPTM_HeLa_A485_30min_R1 4 ASGVAVSDGVIKVFNDMK 18 1 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(0.996)GVAVS(0.004)DGVIKVFNDMK;AS(0.998)GVAVS(0.002)DGVIKVFNDMK;AS(0.98)GVAVS(0.02)DGVIKVFNDMK;AS(0.997)GVAVS(0.003)DGVIKVFNDMK ;;; 110.8 3.04E-12 400607000 244885 259793 51585 144411 64245 318361 531940 3153390 24069 120794 TRUE FALSE FALSE 299358.8234 290173.5315 70668.43813 152299.8073 57848.54222 335029.8897 418286.6734 2380016.158 28899.42753 90682.27885 3.301183287 3.199892362 0.779297113 1.67948809 0.637925546 3.694546431 4.612661688 26.24565889 0.31868881 1 16.46853303 -7.014488364 24.96191321 10 2.270032321 0.17538076 6.692093679 997.8214464 1719136.104 2.875928278 1.741434414 9.67E-08 7.014488364 -7.729967679 (ac)AS(ph)GVAVSDGVIKVFNDMK ddPTM_HeLa_A486_30min_R1 3 ASGVAVSDGVIKVFNDMK 18 1 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(0.83)GVAVS(0.17)DGVIKVFNDMK;AS(1)GVAVSDGVIKVFNDMK;AS(0.999)GVAVS(0.001)DGVIKVFNDMK ;; 106.61 5.18E-06 125383000 1432170 80365 86667 349836 114150 61933 97393 84504 43852 131248 TRUE FALSE FALSE 1331782.279 73996.58472 120226.7834 814435.8877 99832.24259 54292.33615 73024.24128 65264.28391 47653.12667 98382.64652 13.53676005 0.752130455 1.222032418 8.2782474 1.014734266 0.551848706 0.742247173 0.663371908 0.484365164 1 16.58611624 -4.258525403 24.94938717 1.737481567 13.53676444 0.717331751 2.240640534 152.4228117 1304970.496 0.588906609 4.004463296 5.51E-05 4.258525403 11.79928288 (ac)AS(ph)GVAVSDGVIKVFNDMKVR ddPTM_HeLa_A486_30min_R1 2 ASGVAVSDGVIKVFNDMKVR 20 2 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(1)GVAVSDGVIKVFNDMKVR;AS(1)GVAVSDGVIKVFNDMKVR ; 98.3 1.11E-19 689710000 8189600 103928 198210 3907300 0 84046 90727 76689 20574.2 69125 TRUE FALSE FALSE 7615551.331 95692.36678 274962.2202 9096391.864 0 73677.25904 68026.14499 59228.58881 22357.58822 51815.65007 146.973961 1.846785028 5.30654773 175.5529816 0 1.421911313 1.312849398 1.143063702 0.43148331 1 15.66110029 (ac)AS(ph)GVAVSDGVIKVFNDMKVRK ddPTM_HeLa_A486_30min_R1 1 ASGVAVSDGVIKVFNDMKVRK 21 3 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(1)GVAVSDGVIKVFNDMKVRK 85.801 1.47E-09 234100000 1575800 21721 36339 711180 0 21524 14691 22131 3486.7 11370 TRUE FALSE FALSE 1465344.557 19999.74885 50410.43399 1655662.981 0 18868.58772 11015.15641 17092.25442 3788.929963 8522.877994 171.9307209 2.3465957 5.914719656 194.261021 0 2.213875141 1.292422163 2.005455719 0.444559921 1 13.05712496 -5.901315064 21.32021736 1.331352729 82.87453148 0.379735272 57.22894436 5.74047611 1229.164676 17.69957015 20.06946873 1.26E-06 5.901315064 81.54317875 (ac)AS(ph)GVQVADEVCR ddPTM_HeLa_A485_30min_R1 4 ASGVQVADEVCR 12 0 P60981;F6RFD5 P60981 DSTN Destrin 1 0 AS(1)GVQVADEVCR;AS(1)GVQVADEVCR;AS(1)GVQVADEVCR;AS(1)GVQVADEVCR ;;; 76.943 1.99E-17 7385500000 169820 154697 135914 144570 193589 177344 189345 233689 153075 206584 TRUE FALSE FALSE 207595.8731 172787.4685 186194.2445 152467.493 174314.5994 186629.4576 148889.8939 176376.4063 183795.7484 155086.4107 1.33858197 1.114136743 1.200583878 0.983113171 1.123983711 1.203390141 0.960044747 1.13727828 1.185118332 1 17.24271275 -1.547399975 1.111544369 1.096031427 129.890893 0.414171232 0.085342311 836.408567 2.575569128 0.024943553 273421.8492 0.028353066 1.547399975 128.7948616 (ac)AS(ph)GVQVADEVCR ddPTM_HeLa_A486_30min_R1 4 ASGVQVADEVCR 12 0 P60981;F6RFD5 P60981 DSTN Destrin 1 0 AS(1)GVQVADEVCR;AS(1)GVQVADEVCR;AS(1)GVQVADEVCR;AS(1)GVQVADEVCR ;;; 83.869 2.63E-23 8455400000 151060 86967 109689 42893 124112 90620 99710 121324 80424 161743 TRUE FALSE FALSE 140471.4741 80075.41819 152163.5184 99857.07169 108544.7157 79440.22576 74761.50338 93701.17368 87395.21707 121241.5 1.158608843 0.66046212 1.255044835 0.823621216 0.895276911 0.655223053 0.616632946 0.772847364 0.720835828 1 16.88752408 -5.829292644 2.0720421 0.735182619 0.985260005 0.254172082 0.180154471 0.413850876 3.648730562 0.059193153 0.072969447 1.48E-06 5.829292644 0.250077386 (ac)AS(ph)GVTVNDEVIK ddPTM_HeLa_A485_30min_R1 3 ASGVTVNDEVIK 12 0 Q9Y281;G3V2U0;F8WDN3 Q9Y281 CFL2 Cofilin-2 1 0 AS(0.923)GVT(0.077)VNDEVIK;AS(0.98)GVT(0.02)VNDEVIK;AS(0.998)GVT(0.002)VNDEVIK ;; 79.986 9.53E-34 1138040000 1500720 1397980 1228090 1519450 1790420 1263760 2059610 1918230 1046530 1769630 TRUE FALSE FALSE 1834549.987 1561461.6 1682411.596 1602453.706 1612159.498 1329928.519 1619557.498 1447781.085 1256558.972 1328493.809 1.380924755 1.175362346 1.266405297 1.206218422 1.213524284 1.001079953 1.219092997 1.089791368 0.945852336 1 20.34136007 -5.208189112 0.255686789 0.962687181 1.480208599 0.646845232 0.077361676 3.932796977 0.330239699 0.119914579 0.632394796 6.19E-06 5.208189112 0.517521418 (ac)AS(ph)GVTVNDEVIK ddPTM_HeLa_A486_30min_R1 4 ASGVTVNDEVIK 12 0 Q9Y281;G3V2U0;F8WDN3 Q9Y281 CFL2 Cofilin-2 1 0 AS(0.905)GVT(0.095)VNDEVIK;AS(0.988)GVT(0.012)VNDEVIK;AS(0.997)GVT(0.003)VNDEVIK;AS(0.987)GVT(0.013)VNDEVIK ;;; 82.645 1.45E-28 2497410000 2964640 3757920 2688320 1643770 3812650 3621350 4391860 4249940 2394330 3122320 TRUE FALSE FALSE 2756834.045 3460128.733 3729309.5 3826779.632 3334431.885 3174584.656 3292970.176 3282321.438 2601872.452 2340470.749 1.177897244 1.478390078 1.593401456 1.635046981 1.424684281 1.356387239 1.406969165 1.402419338 1.111687661 1 21.1583673 -7.818401945 2.409329111 0.996812872 1.450327611 0.62516201 0.118835974 0.185245737 2.09181833 0.119920287 0.033671318 1.52E-08 7.818401945 0.453514739 (ac)AS(ph)GVTVNDEVIKVFNDMK ddPTM_HeLa_A485_30min_R1 1 ASGVTVNDEVIKVFNDMK 18 1 Q9Y281;G3V2U0;F8WDN3 Q9Y281 CFL2 Cofilin-2 1 0 AS(0.995)GVT(0.005)VNDEVIKVFNDMK 83.769 0.0012548 32779000 7742.9 18055 8024.7 4701.3 15817 17296 30991 101020 7295.9 7159.5 TRUE FALSE FALSE 9465.281392 20166.37519 10993.37047 4958.120115 14242.20394 18201.59182 24369.51968 76244.68661 8760.120208 5374.768411 1.761058462 3.752045419 2.045366354 0.922480698 2.649826533 3.386488575 4.534059482 14.18566918 1.629860031 1 12.39198688 -6.853222643 3.69666037 6.665261178 2.377221248 0.121807516 3.475029402 0.330387202 8.6868465 1.464723292 0.965262176 1.40E-07 6.853222643 -4.288039929 (ac)AS(ph)PAASSVRPPRPK ddPTM_HeLa_A486_30min_R1 1 ASPAASSVRPPRPK 14 2 Q9H875 Q9H875 PRKRIP1 PRKR-interacting protein 1 1 0 AS(1)PAASSVRPPRPK 89.629 1.06E-07 155800000 165610 183180 146580 75613 227600 184630 207860 205650 138460 191910 TRUE FALSE FALSE 154001.5942 168664.1497 203339.7015 176030.8853 199052.2857 161852.2278 155851.2295 158827.9843 150461.8243 143854.4869 1.070537302 1.172463601 1.413509623 1.223673235 1.383705785 1.125110737 1.083394984 1.104087803 1.045930701 1 17.13425069 -6.471192385 7.091366104 1.071886404 1.256038872 0.483307699 0.095170948 0.238004 27.87365209 0.035109983 0.030580578 3.38E-07 6.471192385 0.184152468 (ac)AS(ph)PGKDNYR ddPTM_HeLa_A485_30min_R1 3 ASPGKDNYR 9 1 Q5TD90;O15131 Q5TD90 KPNA5 Importin subunit alpha-6 1 0 AS(1)PGKDNYR;AS(1)PGKDNYR;AS(1)PGKDNYR ;; 65.038 9.56E-05 9654100000 2822870 2635020 2242350 3840400 3768400 2809940 4193000 4282800 2418860 4724500 TRUE FALSE FALSE 3450807.693 2943162.667 3071888.577 4050191.328 3393204.864 2957064.113 3297131.296 3232436.585 2904303.015 3546769.098 0.972943994 0.829815132 0.866108983 1.141938259 0.956703064 0.833734599 0.929615435 0.911374971 0.81885878 1 21.75807398 -6.162956374 24.99999931 0.895099842 0.952244384 0.084138075 0.089932771 126.6952946 32143.99089 0.031077395 0.031077394 6.87E-07 6.162956374 0.057144541 (ac)AS(ph)PGKDNYR ddPTM_HeLa_A486_30min_R1 4 ASPGKDNYR 9 1 Q5TD90;O15131 Q5TD90 KPNA5 Importin subunit alpha-6 1 0 AS(1)PGKDNYR;AS(1)PGKDNYR;AS(1)PGKDNYR;AS(1)PGKDNYR ;;; 65.038 6.03E-05 12230140000 9145170 9615040 5873910 4621670 9758430 9295960 12297800 12148400 6780890 12165900 TRUE FALSE FALSE 8504140.809 8853109.213 8148445.261 10759481.33 8534436.716 8149118.97 9220760.367 9382474.518 7368663.005 9119479.453 0.932524806 0.97079107 0.893520875 1.179835031 0.935846915 0.893594751 1.011105997 1.028838824 0.808013554 1 23.12052005 -7.736009822 24.99964623 0.904006352 0.980762305 0.104294011 0.089969107 449.2898121 441696.4125 0.059784886 0.022578417 1.84E-08 7.736009822 0.076755953 (ac)AS(ph)PPESDGFSDVRK ddPTM_HeLa_A485_30min_R1 1 ASPPESDGFSDVRK 14 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 AS(0.975)PPES(0.024)DGFS(0.001)DVRK 44.639 0.00031869 0 98731 99332 74310 85865 134620 122360 131150 187940 104950 124530 TRUE FALSE FALSE 120693.3703 110948.0133 101800.3613 90555.58753 121216.7601 128766.5804 103128.7311 141847.4203 126012.5023 93486.9628 1.291018199 1.186775246 1.088925752 0.968644021 1.296616731 1.377374733 1.103134897 1.517296274 1.347915245 1 16.51247757 -5.889585807 24.48093623 1.296272662 1.134176323 0.154664261 0.154916315 11.53106641 2505.809251 0.047614368 0.053989622 1.29E-06 5.889585807 -0.162096339 (ac)AS(ph)PSLERPEK ddPTM_HeLa_A486_30min_R1 2 ASPSLERPEK 10 1 Q13601-2;Q13601 Q13601-2 KRR1 KRR1 small subunit processome component homolog 1 0 AS(0.967)PS(0.033)LERPEK;AS(0.996)PS(0.004)LERPEK ; 76.221 1.79E-06 3325000000 1940770 2407770 1772940 816090 2468310 2442720 2788580 2721670 1940480 2330860 TRUE FALSE FALSE 1804732.045 2216969.536 2459469.849 1899898.763 2158711.544 2141362.042 2090847.789 2102005.155 2108682.369 1747197.485 1.032929626 1.268871754 1.407665631 1.087397835 1.235528074 1.225598171 1.196686584 1.203072448 1.206894119 1 20.73661125 -10.6095398 0.50845406 0.863227995 1.216083685 0.29722423 0.095071763 60.52712397 6.430637559 10.50231023 0.044841266 2.46E-11 10.6095398 0.35285569 (ac)AS(ph)PSRQPPPGGSGLLQGSR ddPTM_HeLa_A486_30min_R1 1 ASPSRQPPPGGSGLLQGSR 19 1 Q96S90 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 AS(0.5)PS(0.5)RQPPPGGSGLLQGSR 44.968 1.54E-06 0 180500 289210 229100 144530 340040 312230 393290 327210 237210 310810 TRUE FALSE FALSE 167847.8821 266291.9463 317813.6555 336473.1441 297389.0125 273710.2371 294884.6822 252711.4259 257771.5538 232981.153 0.720435451 1.142976343 1.364117447 1.444207567 1.276450943 1.174817077 1.265701875 1.084686133 1.106405177 1 17.82985373 -7.353269114 5.694185695 1.067644505 1.213988289 0.097288958 0.183988633 0.592542699 29.19234283 0.110214548 0.051649359 4.43E-08 7.353269114 0.146343783 (ac)AS(ph)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR ddPTM_HeLa_A485_30min_R1 3 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHAR 31 1 P49356 P49356 FNTB Protein farnesyltransferase subunit beta 1 0 AS(0.17)PS(0.17)S(0.17)FT(0.17)Y(0.157)Y(0.157)CPPS(0.002)S(0.002)SPVWSEPLYSLRPEHAR;AS(0.946)PS(0.044)S(0.01)FTYYCPPSSSPVWSEPLYSLRPEHAR;AS(0.996)PS(0.004)S(0.001)FTYYCPPSSSPVWSEPLYSLRPEHAR ;; 174.86 3.00E-78 2446280000 15579.2 33264 13422 4947.2 33862 33583.7 28993 48399.1 20627.9 17553.8 TRUE FALSE FALSE 19044.73929 37153.93544 18387.35634 5217.453009 30490.58038 35342.0906 22798.4087 36529.14484 24767.73032 13177.96071 1.445196241 2.819399469 1.395311212 0.395922641 2.313755599 2.681908936 1.730040724 2.771987687 1.879481269 1 13.68583951 (ac)AS(ph)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR ddPTM_HeLa_A486_30min_R1 4 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHAR 31 1 P49356 P49356 FNTB Protein farnesyltransferase subunit beta 1 0 AS(0.857)PS(0.124)S(0.019)FTYYCPPSSSPVWSEPLYSLRPEHAR;AS(0.972)PS(0.027)S(0.001)FTYYCPPSSSPVWSEPLYSLRPEHAR;AS(0.966)PS(0.028)S(0.005)FTYYCPPSSSPVWSEPLYSLRPEHAR;AS(0.966)PS(0.029)S(0.005)FTYYCPPSSSPVWSEPLYSLRPEHAR ;;; 136.01 2.33E-30 2429010000 30126.4 42009 44040.4 16856.5 69720.2 37527.2 23840.8 34152.4 38347.7 16772.7 TRUE FALSE FALSE 28014.69493 38680.05385 61094.02232 39242.78388 60975.2424 32897.47561 17875.57968 26376.64406 41671.70951 12572.70675 2.228215093 3.076509667 4.85925772 3.121267732 4.849810277 2.616578615 1.421776554 2.097928838 3.314458083 1 13.61800766 -6.512047257 23.64541804 2.045626451 3.646430428 0.41892566 0.928773707 264.5501058 577523.9697 0.339670553 0.281427274 3.08E-07 6.512047257 1.600803977 (ac)AS(ph)PTDGTDLEASLLSFEK ddPTM_HeLa_A485_30min_R1 3 ASPTDGTDLEASLLSFEK 18 0 G3V5T8 G3V5T8 LIN52 1 0 AS(0.869)PT(0.066)DGT(0.066)DLEASLLSFEK;AS(0.879)PT(0.06)DGT(0.06)DLEASLLSFEK;AS(0.333)PT(0.333)DGT(0.333)DLEAS(0.002)LLSFEK ;; 85.258 0.00015503 72015000 104748 119332 105844 123112 136305 124728 151828 142808 108472 185878 TRUE FALSE FALSE 128048.8312 133286.8393 145000.1001 129837.2968 122733.9956 131258.5652 119388.7075 107784.1141 130241.3354 139542.0354 0.917636258 0.955173392 1.039114126 0.930452938 0.879548555 0.940638173 0.855575219 0.772413228 0.9333484 1 17.09034026 -5.553055408 5.029893816 0.886486445 0.971662757 0.204247054 0.063112708 0.253152585 16.4095599 0.018905585 0.025320877 2.80E-06 5.553055408 0.085176312 (ac)AS(ph)PTDGTDLEASLLSFEK ddPTM_HeLa_A486_30min_R1 3 ASPTDGTDLEASLLSFEK 18 0 G3V5T8 G3V5T8 LIN52 1 0 AS(0.332)PT(0.332)DGT(0.332)DLEAS(0.003)LLSFEK;AS(0.482)PT(0.482)DGT(0.037)DLEASLLSFEK;AS(0.476)PT(0.476)DGT(0.048)DLEASLLSFEK ;; 80.967 3.63E-46 76720000 112910 137015 100343 52955 136093 124808 154888 145623 117209 140653 TRUE FALSE FALSE 104995.5921 126157.4324 139198.4969 123281.9162 119022.9469 109410.4579 116133.3842 112467.8218 127368.7705 105432.5733 0.995855349 1.196569793 1.320260831 1.169296284 1.12890109 1.037729181 1.101494353 1.066727467 1.208059013 1 16.68596113 -5.896466572 3.525202228 1.087776473 1.183105347 0.16936052 0.089265432 0.413895389 10.0292279 0.029493442 0.033923186 1.27E-06 5.896466572 0.095328875 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGR ddPTM_HeLa_A485_30min_R1 2 ASEDNRVPSPPPTGDDGGGGGR 22 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 ASEDNRVPS(0.864)PPPT(0.136)GDDGGGGGR;AS(0.057)EDNRVPS(0.932)PPPT(0.011)GDDGGGGGR ; 81.157 4.09E-14 1319890000 99596.1 85743.1 67886.8 82775.5 87475.8 116979.1 112657 150257 72729.3 101028.6 TRUE FALSE FALSE 121750.9088 95770.00968 93000.95233 87297.31597 78766.40221 123103.9448 88586.91163 113406.2352 87325.4034 75844.02931 1.605280072 1.262723125 1.226213232 1.151011052 1.038531351 1.623119788 1.168014311 1.495255938 1.151381383 1 16.21074799 -7.999510804 24.98665519 0.999999979 1.307084292 0.233781863 0.186691126 18.79891284 960128.6865 0.176662754 0.045614127 1.00E-08 7.999510804 0.307084313 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGR ddPTM_HeLa_A486_30min_R1 5 ASEDNRVPSPPPTGDDGGGGGR 22 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 AS(0.007)EDNRVPS(0.982)PPPT(0.011)GDDGGGGGR;ASEDNRVPS(0.976)PPPT(0.024)GDDGGGGGR;AS(0.008)EDNRVPS(0.99)PPPT(0.002)GDDGGGGGR;ASEDNRVPS(0.853)PPPT(0.147)GDDGGGGGR;AS(0.208)EDNRVPS(0.782)PPPT(0.009)GDDGGGGGR ;;;; 85.855 3.92E-16 1620610000 64744.7 76385.3 64046.7 2090.8 80368.1 65295.6 74022.9 77787.6 59486.4 52643.3 TRUE FALSE FALSE 60206.43087 70332.25064 88847.29747 4867.488063 70287.5835 57240.09275 55501.58749 60077.06157 64642.72905 39461.07503 1.525716946 1.78231968 2.251517411 0.123349099 1.781187751 1.450545701 1.406489495 1.522438543 1.638139078 1 15.26814264 -11.15255636 2.013173228 5.97E-05 1.493028234 0.077595464 0.514814219 13614452.71 2982832.55 62059919.43 0.126898183 7.04E-12 11.15255636 1.49296855 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGREETPTEGGALSLKPGLPIR ddPTM_HeLa_A485_30min_R1 4 ASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIR 41 3 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 ASEDNRVPS(0.982)PPPT(0.017)GDDGGGGGREETPTEGGALSLKPGLPIR;ASEDNRVPS(0.957)PPPT(0.043)GDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.11)EDNRVPS(0.863)PPPT(0.027)GDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.001)EDNRVPS(0.956)PPPT(0.042)GDDGGGGGREETPTEGGALSLKPGLPIR ;;; 135.03 9.47E-41 4157090000 401664 511687 640957 631337 870077 553757 758887 766949 662745 918502 TRUE FALSE FALSE 491012.7711 571524.3436 878073.6667 665825.3417 783449.0789 582750.8602 596744.5929 578853.5552 795751.8424 689536.3552 0.712091201 0.828853097 1.273426209 0.965613106 1.136196914 0.845134351 0.86542876 0.839482285 1.154038995 1 19.39526709 -4.534492474 24.99912482 0.999736571 0.741281539 0.341274069 0.136738842 213.1280691 458768.6243 0.035716572 0.094659772 2.92E-05 4.534492474 -0.258455032 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGREETPTEGGALSLKPGLPIR ddPTM_HeLa_A486_30min_R1 4 ASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIR 41 3 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 ASEDNRVPS(0.972)PPPT(0.028)GDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.062)EDNRVPS(0.938)PPPTGDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.001)EDNRVPS(0.995)PPPT(0.004)GDDGGGGGREETPTEGGALSLKPGLPIR;AS(0.004)EDNRVPS(0.731)PPPT(0.264)GDDGGGGGREETPTEGGALSLKPGLPIR ;;; 129.72 3.75E-52 4676930000 355751 498976 432597 202952 650984 511260 539318 633987 436632 530646 TRUE FALSE FALSE 330814.692 459435.3245 600110.1437 472482.5126 569331.5165 448185.9393 404374.9321 489641.9999 474479.6133 397768.7877 0.831675843 1.15503111 1.508690884 1.187832045 1.431312698 1.126749894 1.016608001 1.230971396 1.192852803 1 18.60157055 -6.471129707 24.99985572 1.121115476 1.237662237 0.080247744 0.181079615 947.1367573 457559.8898 0.065952618 0.058163991 3.38E-07 6.471129707 0.116546761 (ac)ASES(ph)DTEEFYDAPEDVHLGGGYPVGSPGK ddPTM_HeLa_A486_30min_R1 1 ASESDTEEFYDAPEDVHLGGGYPVGSPGK 29 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 AS(0.268)ES(0.366)DT(0.366)EEFY(0.001)DAPEDVHLGGGYPVGSPGK 104.51 8.73E-40 109710000 132510 165950 143340 69279 210640 150740 217900 226380 156850 198170 TRUE FALSE FALSE 123221.7333 152799.5176 198845.0868 161285.0132 184219.5671 132143.2314 163379.1153 174838.2158 170445.8843 148546.9421 0.829513765 1.028627822 1.33860101 1.085751149 1.240143785 0.889572209 1.099848391 1.176989666 1.147421023 1 17.18055938 -4.366926914 3.89323012 1.125252523 0.827485252 0.361067214 0.117154021 0.238509171 5.764467394 0.029397864 0.156139841 4.30E-05 4.366926914 -0.297767271 (ac)ASGEHS(ph)PGSGAAR ddPTM_HeLa_A485_30min_R1 5 ASGEHSPGSGAAR 13 0 A6NKB8;Q9H4A4 A6NKB8 RNPEP Aminopeptidase B 1 0 AS(0.008)GEHS(0.989)PGS(0.004)GAAR;AS(0.001)GEHS(0.836)PGS(0.163)GAAR;AS(0.014)GEHS(0.944)PGS(0.043)GAAR;AS(0.001)GEHS(0.979)PGS(0.02)GAAR;ASGEHS(0.996)PGS(0.004)GAAR ;;;; 98.592 2.57E-68 12908067000 27407.6 27999.94 37272.23 23877.2 31878.05 31712.46 45493.9 41985.6 31610.9 34373.8 TRUE FALSE FALSE 33504.32606 31274.28942 51060.7789 25181.55098 28704.15941 33372.87537 35773.75661 31688.56577 37954.91768 25805.04426 1.298363441 1.211944808 1.978713091 0.975838317 1.112346839 1.293269449 1.386308671 1.227998892 1.470833272 1 14.65536548 -11.04465654 2.568180922 0.576633717 1.325096188 0.130968183 0.253653971 25919949.4 10611921.81 64449502.94 0.064144145 9.02E-12 11.04465654 0.748462471 (ac)ASGEHS(ph)PGSGAAR ddPTM_HeLa_A486_30min_R1 3 ASGEHSPGSGAAR 13 0 A6NKB8;Q9H4A4 A6NKB8 RNPEP Aminopeptidase B 1 0 ASGEHS(0.991)PGS(0.009)GAAR;ASGEHS(0.993)PGS(0.007)GAAR;ASGEHS(0.987)PGS(0.013)GAAR ;; 100.69 6.54E-82 11895100000 29778 32150 49889 0 47915 36882 26188 16610 19622 35945 TRUE FALSE FALSE 27690.71597 29602.31691 69207.35687 0 41905.05391 32331.87383 19635.48541 12828.26559 21322.85076 26944.13804 1.027708362 1.098655183 2.56854967 0 1.5552568 1.199959479 0.728747952 0.476105993 0.791372533 1 14.71768381 -6.749986027 5.195535549 0.701012402 1.256857932 0.137269789 0.601291839 0.340109692 26.02980396 0.240077828 0.173703587 1.78E-07 6.749986027 0.555845531 (ac)ASHLRPPS(ph)PLLVR ddPTM_HeLa_A485_30min_R1 8 ASHLRPPSPLLVR 13 1 Q8TDB6;Q8TDB6-2 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR ;;;;;;; 103.67 1.29E-12 19657490000 53402.2 49169.7 46954.8 51289.9 60159.2 51299.3 47127.5 63464.5 36836.9 51893.8 TRUE FALSE FALSE 65281.33515 54919.6687 64325.33447 54091.73736 54169.53882 53985.25202 37058.32463 47899.73187 44229.72794 38957.63069 1.675700857 1.409728151 1.65116136 1.388476055 1.390473133 1.385742692 0.951246879 1.229534009 1.135329001 1 15.24961832 -6.236155298 0.787971932 1.070759506 1.578757702 0.742221942 0.117858041 0.333049534 0.451935591 0.0775494 0.076651697 5.81E-07 6.236155298 0.507998196 (ac)ASHLRPPS(ph)PLLVR ddPTM_HeLa_A486_30min_R1 8 ASHLRPPSPLLVR 13 1 Q8TDB6;Q8TDB6-2 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR;AS(0.001)HLRPPS(0.999)PLLVR;ASHLRPPS(1)PLLVR;ASHLRPPS(1)PLLVR ;;;;;;; 118.55 1.36E-21 16663110000 42571.9 28491 27743 15810.7 43958 30855.6 31585.7 24866.8 23833.7 23914.9 TRUE FALSE FALSE 39587.82965 26233.2694 38485.83258 36808.10863 38444.37775 27048.94979 23682.62378 19205.17248 25899.62431 17926.45338 2.208347006 1.463383127 2.146873772 2.053284487 2.144561277 1.50888462 1.321099231 1.071331405 1.444771242 1 14.12980247 -6.507190828 2.789398417 1.213470131 1.982919954 0.730452971 0.227869741 0.147967885 2.322517912 0.091572531 0.073015353 3.11E-07 6.507190828 0.769449823 (ac)ASIWVGHR ddPTM_HeLa_A485_30min_R1 2 ASIWVGHR 8 0 D6RAZ8;D6RCA8;D6RFG5;P12429 D6RAZ8 ANXA3 Annexin;Annexin A3 0 0 ; ; 47.849 0.00079967 81292000 4628.1 6288.2 7601.2 4439.7 8814.8 6283.5 7869.6 9502.5 5641.8 7017.3 FALSE FALSE TRUE 5657.604878 7023.55029 10413.20019 4682.229569 7937.167561 6612.494344 6188.195671 7171.996976 6774.05751 5268.016254 1.073953573 1.333243853 1.976683383 0.888803174 1.506671046 1.255215251 1.174672851 1.361422712 1.285883943 1 12.36304408 -11.76148059 0.22347125 0.44369605 1.379538081 0.11134075 0.271834959 110.3110676 2.695830739 29.86634884 0.531686576 1.73E-12 11.76148059 0.935842031 (ac)ASIWVGHR ddPTM_HeLa_A486_30min_R1 1 ASIWVGHR 8 0 D6RAZ8;D6RCA8;D6RFG5;P12429 D6RAZ8 ANXA3 Annexin;Annexin A3 0 0 45.718 0.003252 31398000 3401.1 3371.7 4244.4 2144 4492 3078.2 3889.8 3993.9 3295.9 3218.5 FALSE FALSE TRUE 3162.700453 3104.514212 5887.945349 4991.340352 3928.571474 2698.442981 2916.530898 3084.576156 3581.591266 2412.566651 1.310927701 1.286809718 2.440531683 2.068892211 1.628378421 1.118494687 1.208891326 1.278545467 1.484556401 1 11.23635308 -6.110645219 4.612146657 1.237799653 1.795456697 0.387651733 0.334978364 0.270628826 9.179913607 0.122617606 0.123713275 7.75E-07 6.110645219 0.557657044 (ac)ASLEVS(ph)RSPRR ddPTM_HeLa_A486_30min_R1 2 ASLEVSRSPRR 11 2 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 ASLEVS(0.5)RS(0.5)PRR;ASLEVS(0.62)RS(0.38)PRR ; 76.728 0.00062333 372950000 18007.5 19382.1 20451 6464 29103.1 20408.2 24664 18465.2 18355.4 19198.1 TRUE FALSE FALSE 16745.26724 17846.19181 28370.1749 15048.51867 25452.71782 17890.44378 18492.80633 14261.07705 19946.46085 14390.7708 1.163611559 1.240113685 1.971414547 1.045706229 1.768683427 1.243188709 1.285046269 0.990987714 1.386059241 1 13.81285625 -6.653684744 2.716288533 1.155170794 1.437393011 0.169086329 0.281365082 0.49199626 7.353381976 0.118047062 0.085472598 2.22E-07 6.653684744 0.282222217 (ac)ASLEVSRS(ph)PR ddPTM_HeLa_A485_30min_R1 4 ASLEVSRSPR 10 1 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 ASLEVS(0.001)RS(0.999)PR;ASLEVSRS(1)PR;ASLEVS(0.003)RS(0.997)PR;ASLEVS(0.061)RS(0.939)PR ;;; 99.506 6.00E-14 10279630000 147305 167438 198140 149442 236277 201283 239748 264698 177446 232113 TRUE FALSE FALSE 180072.4891 187018.4176 271440.2313 157605.6381 212752.4323 211821.8666 188523.8812 199780.4005 213057.7846 174251.5008 1.033405671 1.073267184 1.557749747 0.904472199 1.220950358 1.215609998 1.081906786 1.146506053 1.222702723 1 17.41081156 -10.81405223 2.510774761 0.944110082 1.163828662 0.081839015 0.162503155 18460732.92 12791847.22 6271586.988 0.039201636 1.53E-11 10.81405223 0.21971858 (ac)ASLEVSRS(ph)PR ddPTM_HeLa_A486_30min_R1 3 ASLEVSRSPR 10 1 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 ASLEVS(0.001)RS(0.999)PR;ASLEVS(0.006)RS(0.994)PR;ASLEVS(0.002)RS(0.998)PR ;; 121.61 4.96E-21 6106800000 107159 115110 119717 24453.1 135652 93480 105755 98217 60765 52795 TRUE FALSE FALSE 99647.70747 105988.2644 166074.6285 56928.05259 118637.2613 81947.38803 79293.98044 75855.13316 66032.15913 39574.78836 2.517959327 2.678176404 4.196475468 1.438492913 2.997799007 2.07069681 2.003648882 1.916753982 1.668541055 1 15.27229401 -7.082311536 0.391189991 0.984414969 3.0666691 0.457416653 0.63219745 1.059980381 0.429205099 0.740331841 0.724834835 8.27E-08 7.082311536 2.082254131 (ac)ASLEVSRS(ph)PRR ddPTM_HeLa_A485_30min_R1 4 ASLEVSRSPRR 11 2 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 ASLEVS(0.026)RS(0.974)PRR;ASLEVS(0.284)RS(0.716)PRR;ASLEVS(0.021)RS(0.979)PRR;ASLEVS(0.245)RS(0.755)PRR ;;; 91.441 8.04E-07 2664210000 45241.4 82752 67864.4 38170.6 87553 65409 38705.3 89053.7 68533.3 57182.8 TRUE FALSE FALSE 55305.19335 92429.12655 92970.26563 40255.76322 78835.9159 68833.7141 30435.59646 67213.14044 82287.30469 42928.18033 1.28831907 2.15311075 2.165716434 0.937746788 1.836460695 1.603462191 0.708988739 1.565711379 1.916859835 1 15.3896374 -5.247945646 24.97123569 1.392596313 1.897454932 0.217127079 0.433936771 1232.703881 2281213.977 0.118097344 0.203090193 5.65E-06 5.247945646 0.504858619 (ac)ASLEVSRS(ph)PRR ddPTM_HeLa_A486_30min_R1 2 ASLEVSRSPRR 11 2 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 ASLEVS(0.285)RS(0.715)PRR;ASLEVS(0.004)RS(0.996)PRR ; 104.55 2.21E-09 1589130000 18678 26453.1 19614.3 9951.6 31769 20132.2 28237 25524 24456 27890 TRUE FALSE FALSE 17368.76865 24356.86002 27209.48225 23167.82773 27784.23579 17648.49385 21171.80394 19712.74239 26575.86577 20906.16247 0.830796598 1.165056478 1.301505348 1.108181751 1.328997411 0.844176634 1.012706372 0.942915392 1.271197706 1 14.35164064 -6.263442581 24.9998324 1.010538139 1.154353124 0.144134129 0.161058302 354.3544382 4422288.508 0.05519248 0.051119955 5.45E-07 6.263442581 0.143814986 (ac)ASLSLAPVNIFK ddPTM_HeLa_A485_30min_R1 1 ASLSLAPVNIFK 12 0 F8VQ14;F5GWF6;P78371 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 56.258 2.86E-06 10638000 20645 22522 22696 23674 31586 25140 33307 35010 22275 34447 FALSE FALSE TRUE 25237.40903 25155.75198 31092.19486 24967.25067 28441.18693 26456.29153 26190.68736 26423.74261 26745.38818 25859.99685 0.975924675 0.972767017 1.202327867 0.965477715 1.099814014 1.023058575 1.012787724 1.021799916 1.034237875 1 14.65843448 -9.444501424 8.242081605 1.000002347 1.035959381 0.022243203 0.06725162 0 0 0.06289489 0.015254252 3.59E-10 9.444501424 0.035957034 (ac)ASLSLAPVNIFK ddPTM_HeLa_A486_30min_R1 1 ASLSLAPVNIFK 12 0 F8VQ14;F5GWF6;P78371 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 65.305 7.83E-08 13081000 25681 34449 26229 13161 39666 32177 36422 35958 27907 32339 FALSE FALSE TRUE 23880.89452 31719.13578 36385.57124 30639.47312 34690.72041 28207.32889 27308.83037 27771.14836 30326.00123 24241.10391 0.985140553 1.308485616 1.500986563 1.263947106 1.431070158 1.163615692 1.126550609 1.145622265 1.251015686 1 14.56516778 -6.41738916 8.154439407 1.143248345 1.307702114 0.251593567 0.138193439 0.449148734 31.2635519 0.049310021 0.043402499 3.82E-07 6.41738916 0.164453769 (ac)AT(ph)PPKR ddPTM_HeLa_A485_30min_R1 2 ATPPKR 6 1 D6RCP9;D6RFG8;P27707;D6R9C6;D6RG38;Q9UBK9 D6RCP9;Q9UBK9 DCK;UXT Deoxycytidine kinase;Protein UXT 1 0 AT(1)PPKR;AT(1)PPKR ; 50.966 0.017688 13265700000 251349 345903 291216 352460 363750 371310 416880 440660 286639 484130 TRUE FALSE FALSE 307260.7179 386353.3469 398948.9169 371713.9973 327533.7728 390751.2174 327810.1824 332587.4441 344164.8181 363445.3008 0.845411173 1.063030244 1.097686271 1.022750869 0.901191382 1.075130746 0.901951908 0.915096284 0.946950799 1 18.47137873 -6.782750032 24.99932455 0.933924439 1.004557338 0.122986315 0.077024762 467.8064203 548773.8732 0.032368502 0.021846991 1.65E-07 6.782750032 0.070632899 (ac)AT(ph)PPKR ddPTM_HeLa_A486_30min_R1 3 ATPPKR 6 1 D6RCP9;D6RFG8;P27707;D6R9C6;D6RG38;Q9UBK9 D6RCP9;Q9UBK9 DCK;UXT Deoxycytidine kinase;Protein UXT 1 0 AT(1)PPKR;AT(1)PPKR;AT(1)PPKR ;; 50.966 0.013541 22061200000 481100 524200 446470 192177 604210 525060 589310 605940 445110 549890 TRUE FALSE FALSE 447377.3744 482660.4829 619355.1409 447397.7681 528424.3478 460283.4356 441858.4049 467980.6896 483692.4932 412193.9648 1.08535644 1.170954755 1.502581779 1.085405916 1.281979827 1.116667091 1.071967187 1.135340955 1.173458455 1 18.65296386 -6.338836951 6.990363911 1.105368404 1.229714084 0.219088956 0.118380981 0.444052847 34.46789953 0.041984401 0.036988736 4.58E-07 6.338836951 0.12434568 (ac)AT(ph)SPQKS(ph)PSVPK ddPTM_HeLa_A485_30min_R1 1 ATSPQKSPSVPK 12 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.508)S(0.511)PQKS(0.934)PS(0.047)VPK 43.282 0.0048699 923600000 1404400 904050 629400 2704800 1328200 1171200 2056800 1547500 1014200 3546600 TRUE FALSE FALSE 1716803.935 1009770.783 862241.2515 2852556.375 1195959.744 1232522.221 1617347.877 1167973.199 1217740.637 2662497.89 0.644809501 0.379256933 0.323846736 1.071383525 0.449187114 0.462919511 0.607455083 0.438675727 0.457367738 1 21.34434895 -10.50697966 3.040623149 1.014644447 0.536395007 0.324258429 0.20042039 67249273.96 77969565.75 8215867.126 0.050120311 3.11E-11 10.50697966 -0.47824944 (ac)AT(ph)SPQKSPS(ph)VPKSPTPK ddPTM_HeLa_A485_30min_R1 1 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.477)S(0.489)PQKS(0.12)PS(0.599)VPKS(0.28)PT(0.036)PK 43.408 0.017239 298320000 288510 204290 98277 419480 290110 330530 604940 545260 182060 622280 TRUE FALSE FALSE 352688.0542 228179.9384 134633.7519 442395.1302 261225.6298 347836.0397 475689.6271 411534.1301 218597.772 467157.0482 0.754966784 0.488443746 0.288198053 0.946994446 0.559181609 0.744580524 1.018264905 0.88093315 0.467932086 1 18.83354811 -5.269764487 24.99333162 0.794025845 0.508326944 0.310079832 0.199318318 755.7037909 2268745.469 0.056285522 0.085070708 5.37E-06 5.269764487 -0.285698901 (ac)AT(ph)SPQKSPSVPKS(ph)PTPK ddPTM_HeLa_A485_30min_R1 1 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.461)S(0.415)PQKS(0.139)PS(0.055)VPKS(0.902)PT(0.028)PK 60.278 7.18E-05 1246900000 812810 560320 288710 1322300 747570 859300 1781800 1446400 568740 1888100 TRUE FALSE FALSE 993616.7803 625844.5499 395515.8432 1394533.901 673139.3059 904291.6193 1401103.874 1091668.132 682880.9012 1417431.418 0.700998135 0.441534272 0.279037023 0.983845767 0.474900794 0.637979099 0.988480893 0.770173511 0.481773504 1 20.4348475 -5.713531606 0.94710784 0.772976411 0.501931077 0.172777549 0.222608413 1.070090139 2.050498797 0.106152345 0.178943769 1.93E-06 5.713531606 -0.271045333 (ac)ATAAETS(ph)AS(ph)EPEAESK ddPTM_HeLa_A485_30min_R1 1 ATAAETSASEPEAESK 16 0 A0A499FI31;A0A494C0L2;F8W667;Q15020-3;Q15020-2;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 2 0 AT(0.007)AAET(0.193)S(0.802)AS(0.995)EPEAES(0.003)K 56.851 8.39E-34 0 120690 126440 111920 177520 165710 139080 193430 190170 130970 226910 TRUE FALSE FALSE 147537.0741 141226.0581 153323.8654 187217.4681 149211.3306 146362.0137 152102.1003 143530.5093 157254.4777 170345.513 0.866104845 0.82905652 0.90007575 1.099045492 0.875933436 0.859206745 0.892903474 0.84258462 0.923150102 1 17.37810442 -11.92345677 1.486410667 3.384306391 0.898911056 0.151099061 0.072049741 1936166.047 37811.92713 15608861.69 0.020206053 1.19E-12 11.92345677 -2.485395335 (ac)ATDELATKLS(ph)R ddPTM_HeLa_A486_30min_R1 1 ATDELATKLSR 11 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 ATDELAT(0.048)KLS(0.952)R 42.976 0.00023072 0 66989 73122 50255 23961 74867 87755 92266 88482 59134 84731 TRUE FALSE FALSE 62293.41703 67327.54641 69715.08188 55782.41892 65476.48275 76928.68033 69180.07091 68336.58015 64259.78273 63513.80609 0.980785452 1.060045848 1.097636658 0.878272337 1.030901575 1.211211941 1.08921312 1.075932689 1.01174511 1 15.95478261 -6.015154024 24.99105684 1.087309329 1.007317333 0.169470133 0.075572619 1184.837864 1953959.957 0.025079164 0.025926875 9.66E-07 6.015154024 -0.079991995 (ac)ATEIGS(ph)PPRFFHMPR ddPTM_HeLa_A485_30min_R1 1 ATEIGSPPRFFHMPR 15 1 Q9C0J8;B9A053;Q9C0J8-3;Q9C0J8-2 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 ATEIGS(1)PPRFFHMPR 44.816 0.029084 10794000 6606.6 8079.9 6651.9 5197.9 9599.1 7466.1 10424 11970 6857.6 11632 TRUE FALSE FALSE 8076.215377 9024.774019 9112.714619 5481.848115 8643.3799 7857.013451 8196.827244 9034.338732 8233.857418 8732.356471 0.924860936 1.033486671 1.043557332 0.62776275 0.989810703 0.899758671 0.938673 1.03458199 0.94291357 1 13.09215531 -7.066058064 7.088499269 0.991163213 0.920422721 0.079003795 0.110973958 0.795601357 73.35905586 0.053850478 0.031119473 8.59E-08 7.066058064 -0.070740492 (ac)ATGTGK(ac)HK ddPTM_HeLa_A485_30min_R1 2 ATGTGKHK 8 1 Q9H0E9-2;Q9H0E9-4;B5MCW3;Q9H0E9;F8WDX5;D6RID0;F8WCS7;F8WBH2;C9JV05 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 ; ATGTGK(1)HK;ATGTGK(1)HK 74.127 1.54E-05 167731000 338990 409600 356540 351910 452010 400370 510940 582920 418630 550000 FALSE TRUE FALSE 414397.156 457499.157 488438.9829 371133.9522 407006.2973 421332.7541 401773.495 439957.956 502645.2011 412895.122 1.00363781 1.108027517 1.182961379 0.898857682 0.985737723 1.020435291 0.973064281 1.065544088 1.217367739 1 18.65541585 -9.836414553 7.593422119 1.000001059 1.047103779 0.025080709 0.092370934 1.40E-10 0 0.092679047 0.022477971 1.46E-10 9.836414553 0.04710272 (ac)ATGTGK(ac)HK ddPTM_HeLa_A486_30min_R1 2 ATGTGKHK 8 1 Q9H0E9-2;Q9H0E9-4;B5MCW3;Q9H0E9;F8WDX5;D6RID0;F8WCS7;F8WBH2;C9JV05 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 ; ATGTGK(1)HK;ATGTGK(1)HK 74.127 1.06E-05 139111000 352590 327380 341670 111930 421820 448640 440620 378530 389310 420230 FALSE TRUE FALSE 327875.2618 301437.2165 473973.7742 260578.6966 368911.4023 393291.3582 330372.2156 292346.9823 423055.7043 315001.6728 1.04086832 0.956938463 1.504670658 0.827229565 1.17114109 1.248537364 1.048795115 0.92808073 1.34302685 1 18.26499996 -10.19039369 4.101726089 0.999945293 1.114507572 0.03214691 0.194286424 17480202.66 43676236.13 4577.638369 0.044666348 6.45E-11 10.19039369 0.114562279 (ac)ATLKDQLIYNLLK ddPTM_HeLa_A485_30min_R1 2 ATLKDQLIYNLLK 13 1 P00338;P00338-2;P00338-5;F5GYU2;F5GXY2;P00338-4;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5GWW2;F5H8H6;F5GXU1;F5GXC7 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 91.584 6.59E-07 37069000 23831 54557 33235 15771.3 54588 54345 63082 95051 36469 29930 FALSE FALSE TRUE 29132.12373 60936.96657 45530.00952 16632.84618 49153.02705 57190.42017 49604.01537 71739.59322 43787.99379 22469.00182 1.296547304 2.712046002 2.026347672 0.740257459 2.18759282 2.545303108 2.207664398 3.19282511 1.948817938 1 14.45564841 -5.979626346 24.99979089 2.323179091 1.749489992 0.083844186 0.702622782 507.2488176 622424.0995 0.214738488 0.243466331 1.05E-06 5.979626346 -0.5736891 (ac)ATLKDQLIYNLLK ddPTM_HeLa_A486_30min_R1 2 ATLKDQLIYNLLK 13 1 P00338;P00338-2;P00338-5;F5GYU2;F5GXY2;P00338-4;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5GWW2;F5H8H6;F5GXU1;F5GXC7 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 62.823 8.53E-05 30452000 23696 18042 11917.5 9366.9 22539.1 12680.3 17827.6 20828.8 10013.8 21012 FALSE FALSE TRUE 22035.03277 16612.28621 16532.27516 21806.61658 19712.03591 11115.93351 13366.94592 16086.53693 10881.80425 15750.45843 1.399008979 1.054717631 1.049637712 1.384506785 1.251521408 0.705753014 0.848670277 1.021337696 0.690888096 1 13.9431062 -6.250110743 24.98046819 0.854372201 1.217057778 0.619938684 0.146509093 516.9540676 1139922.121 0.048841056 0.048418517 5.62E-07 6.250110743 0.362685577 (ac)ATS(ph)PQKS(ph)PSVPK ddPTM_HeLa_A486_30min_R1 1 ATSPQKSPSVPK 12 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.478)S(0.538)PQKS(0.886)PS(0.098)VPK 41.092 0.025887 676510000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ATS(ph)PQKS(ph)PSVPKS(ph)PTPK ddPTM_HeLa_A485_30min_R1 2 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 3 0 AT(0.524)S(0.559)PQKS(0.901)PS(0.062)VPKS(0.858)PT(0.096)PK;AT(0.515)S(0.553)PQKS(0.86)PS(0.115)VPKS(0.853)PT(0.105)PK ; 57.945 9.45E-05 1765840000 1563320 766300 414390 4267100 1183200 1117850 2368410 1580760 781520 5424300 TRUE FALSE FALSE 1911075.141 855912.1191 567690.1052 4500200.868 1065396.454 1176378.897 1862379.855 1193076.131 938363.8955 4072121.837 0.469306965 0.210188239 0.139408919 1.105124318 0.261631772 0.288885978 0.457348756 0.292986354 0.230436105 1 21.9573493 -10.3489087 3.909001412 1.001747604 0.385927252 0.334797689 0.260506238 726497643 1341267928 14950553 0.065379218 4.48E-11 10.3489087 -0.615820352 (ac)ATS(ph)PQKS(ph)PSVPKS(ph)PTPK ddPTM_HeLa_A486_30min_R1 3 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 3 0 AT(0.486)S(0.521)PQKS(0.863)PS(0.154)VPKS(0.883)PT(0.093)PK;AT(0.461)S(0.54)PQKS(0.985)PS(0.019)VPKS(0.837)PT(0.158)PK;AT(0.471)S(0.534)PQKS(0.945)PS(0.067)VPKS(0.834)PT(0.15)PK ;; 78.272 5.50E-05 2763850000 1564870 1408250 309438 1811360 860270 2131440 3346920 2571500 1037570 5068600 TRUE FALSE FALSE 1455180.694 1296655.141 429260.6806 4216937.621 752366.9149 1868484.604 2509485.216 1986025.585 1127507.403 3799389.569 0.383003814 0.34127986 0.112981486 1.10989872 0.198023104 0.491785475 0.660496948 0.522722282 0.296760146 1 21.85733622 -14 0.292884025 5.190177722 0.435268188 0.266929165 0.266400915 353.9728324 3.325958489 908.5551497 0.277450475 1.00E-14 14 -4.754909534 (ac)ATS(ph)PQKSPSVPKS(ph)PTPK ddPTM_HeLa_A485_30min_R1 1 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.467)S(0.518)PQKS(0.123)PS(0.15)VPKS(0.613)PT(0.128)PK 43.349 0.00079608 283460000 287500 209800 107310 442890 276160 312700 570360 488140 171470 677580 TRUE FALSE FALSE 351453.3831 234334.285 147008.4345 467083.9592 248664.5407 329072.4885 448497.9266 368422.8996 205882.4562 508671.7759 0.690923695 0.460678764 0.289004504 0.918242335 0.488850674 0.646925 0.881703975 0.72428414 0.404745193 1 18.95637552 -5.257861213 24.98965084 0.705667403 0.478249981 0.240528834 0.196347228 477.6341425 3335748.201 0.052985086 0.087275837 5.52E-06 5.257861213 -0.227417423 (ac)ATS(ph)PQKSPSVPKS(ph)PTPK ddPTM_HeLa_A486_30min_R1 2 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.466)S(0.527)PQKS(0.087)PS(0.129)VPKS(0.768)PT(0.023)PK;AT(0.469)S(0.519)PQKS(0.021)PS(0.192)VPKS(0.692)PT(0.108)PK ; 71.527 3.68E-08 1766230000 1096040 740730 283553 848350 702140 1080280 1787950 1665580 576730 2478420 TRUE FALSE FALSE 1019213.256 682031.8571 393352.3154 1975001.673 614071.054 947006.0371 1340585.999 1286363.793 626721.4208 1857807.5 0.548610798 0.367116538 0.211729318 1.063081979 0.330535351 0.509743898 0.721595751 0.692409624 0.33734465 1 20.82516959 -14 0.196017932 2.994177685 0.460965169 0.25233482 0.236864473 199.7779748 1.968340518 156.5842827 0.595168336 1.00E-14 14 -2.533212517 (ac)ATSPQKS(ph)PSVPK ddPTM_HeLa_A485_30min_R1 1 ATSPQKSPSVPK 12 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 AT(0.058)S(0.058)PQKS(0.864)PS(0.02)VPK 48.091 0.00033118 3142700000 1971600 1430600 1076100 2708200 2153000 1764300 2965200 2411000 1466200 3804600 TRUE FALSE FALSE 2410175.618 1597896.225 1474194.17 2856142.108 1938639.76 1856676.02 2331660.797 1819698.47 1760452.891 2856183.238 0.843844886 0.55945158 0.516141314 0.9999856 0.678751886 0.650054939 0.816355465 0.637108448 0.616365528 1 21.44565711 -10.01955228 4.15883002 1.000023625 0.70035377 0.294210256 0.138442621 92657585.5 192358743.8 33061.78983 0.034450287 9.56E-11 10.01955228 -0.299669854 (ac)ATSPQKS(ph)PSVPK ddPTM_HeLa_A486_30min_R1 1 ATSPQKSPSVPK 12 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 AT(0.003)S(0.071)PQKS(0.908)PS(0.018)VPK 66.498 8.56E-05 1221000000 738130 734930 407370 421460 743090 927000 1221100 1130600 612130 1174700 TRUE FALSE FALSE 686390.8987 676691.4702 565114.5737 981180.1794 649884.7232 812636.165 915567.8645 873187.0608 665189.9213 880547.474 0.779504705 0.76848948 0.641776384 1.114284247 0.738046207 0.922876039 1.039771156 0.991641094 0.755427664 1 19.74804126 -5.244495556 24.99225384 0.932436415 0.733780121 0.403006498 0.115598731 861.7726937 1271118.819 0.030824639 0.053214924 5.70E-06 5.244495556 -0.198656294 (ac)ATSPQKS(ph)PSVPKS(ph)PT(ph)PKSPPSR ddPTM_HeLa_A486_30min_R1 1 ATSPQKSPSVPKSPTPKSPPSR 22 3 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 3 0 AT(0.125)S(0.134)PQKS(0.719)PS(0.195)VPKS(0.821)PT(0.549)PKS(0.379)PPS(0.077)R 49.793 0.0067003 284250000 165100 129580 49588 204990 186430 227970 447570 418250 127210 447950 TRUE FALSE FALSE 153527.3426 119311.6089 68789.80161 477227.0796 163046.211 199845.3792 335583.2521 323023.6053 138236.6652 335780.4043 0.457225438 0.355326301 0.204865444 1.421247558 0.485573931 0.595166891 0.999412854 0.962008507 0.411687709 1 18.35715851 -5.187371825 24.99999786 0.819493903 0.340756937 0.392820634 0.284209179 145.1637747 48996.20446 0.075421183 0.130633315 6.50E-06 5.187371825 -0.478736966 (ac)ATSPQKS(ph)PSVPKS(ph)PTPK ddPTM_HeLa_A485_30min_R1 2 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 AT(0.121)S(0.116)PQKS(0.753)PS(0.19)VPKS(0.729)PT(0.092)PK;AT(0.022)S(0.049)PQKS(0.932)PS(0.237)VPKS(0.673)PT(0.088)PK ; 77.287 2.74E-08 1082040000 1061660 728970 453310 2179120 1040760 997830 1763580 1440170 776820 2977200 TRUE FALSE FALSE 1297822.604 814216.7003 621008.2328 2298159.808 937138.2801 1050074.836 1386776.726 1086966.049 932720.6486 2235038.831 0.580671166 0.364296445 0.277851205 1.028241557 0.419293959 0.469823979 0.620470976 0.486329828 0.417317424 1 21.09186847 -10.37337301 2.935750213 1.006943556 0.519388161 0.355114841 0.194752515 25828913.15 31382427.89 1528741.173 0.049487727 4.23E-11 10.37337301 -0.487555395 (ac)ATSPQKS(ph)PSVPKSPTPK ddPTM_HeLa_A485_30min_R1 2 ATSPQKSPSVPKSPTPK 17 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 AT(0.079)S(0.079)PQKS(0.815)PS(0.025)VPKS(0.003)PT(0.001)PK;AT(0.025)S(0.009)PQKS(0.875)PS(0.091)VPKS(0.001)PTPK ; 89.483 4.06E-19 723930000 163360 284590 105520 122080 248190 435490 561246.2 1041556.1 136100 181830 TRUE FALSE FALSE 199698.8684 317870.3249 144556.2391 128748.9213 223479.3322 458291.583 441331.3644 786112.8334 163414.0216 136503.1273 1.462961855 2.328666977 1.058995804 0.943193931 1.637173715 3.357370574 3.233122735 5.758936434 1.197144892 1 17.05857448 -6.23181909 5.896738177 3.229364708 1.469460904 0.214270199 1.292966386 0.237097099 26.84412504 0.420918558 0.411033666 5.86E-07 6.23181909 -1.759903804 (ac)ATVVVEATEPEPSGSIANPAAS(ph)TSPSLSHR ddPTM_HeLa_A485_30min_R1 1 ATVVVEATEPEPSGSIANPAASTSPSLSHR 30 0 P46821;D6RA32;D6RCL2;D6RGJ3 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ATVVVEATEPEPS(0.018)GS(0.078)IANPAAS(0.222)T(0.222)S(0.189)PS(0.222)LS(0.05)HR 49.445 1.20E-06 185350000 27691 75225 102290 22999 133900 63828 64359 121180 111010 23903 TRUE FALSE FALSE 33850.76742 84021.90938 140131.3276 24255.37713 120568.4458 67169.93538 50608.17389 91460.415 133288.6888 17944.422 1.886422835 4.682341363 7.80918592 1.351694534 6.718993002 3.743220895 2.820273279 5.096871606 7.427861914 1 14.13124783 (ac)ATVVVEATEPEPSGSIANPAAS(ph)TSPSLSHR ddPTM_HeLa_A486_30min_R1 1 ATVVVEATEPEPSGSIANPAASTSPSLSHR 30 0 P46821;D6RA32;D6RCL2;D6RGJ3 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ATVVVEAT(0.001)EPEPS(0.06)GS(0.06)IANPAAS(0.176)T(0.176)S(0.176)PS(0.176)LS(0.176)HR 41.562 0.00031514 207970000 0 6767.9 12887 0 20634 0 8284.3 6455.9 7747.5 0 TRUE FALSE FALSE 0 6231.586956 17877.19153 0 18045.89132 0 6211.480518 4986.032501 8419.059538 0 0 (ac)ATVVVEATEPEPSGSIANPAASTSPS(ph)LSHR ddPTM_HeLa_A486_30min_R1 1 ATVVVEATEPEPSGSIANPAASTSPSLSHR 30 0 P46821;D6RA32;D6RCL2;D6RGJ3 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ATVVVEATEPEPSGSIANPAAS(0.096)T(0.076)S(0.321)PS(0.41)LS(0.096)HR 76.237 8.51E-15 235650000 27954 49633 84068 10296 98795 23264 21174 38170 42319 15428 TRUE FALSE FALSE 25994.56895 45699.90032 116621.381 23969.60833 86403.20987 20393.92421 15876.04124 29479.52425 45987.24499 11564.72838 2.24774574 3.951662228 10.08423001 2.072647756 7.471270144 1.763458988 1.372798454 2.549089203 3.976508871 1 13.49744376 -6.286629944 24.67423018 2.181715519 5.199511734 0.296034115 2.337748416 871.5995818 853731.0707 0.813714538 0.717927217 5.17E-07 6.286629944 3.017796215 (ac)DDDIAALVVDNGSGMCK ddPTM_HeLa_A485_30min_R1 3 DDDIAALVVDNGSGMCK 17 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8 C9JUM1;P60709 ACTB "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed" 0 0 ;; ;; 128.85 1.11E-59 195116000 216259 218569 221460 242520 317327 244715 300585 308681 220202 336666 FALSE FALSE TRUE 264365.0685 244128.7433 303387.2697 255768.2535 285732.8097 257527.899 236362.5592 232976.5008 264394.5216 252741.3621 1.045990519 0.965923192 1.200386305 1.011976241 1.130534422 1.018938479 0.9351954 0.921798074 1.046107054 1 17.94730226 -6.521638387 8.209251959 0.970189932 1.069663478 0.305477123 0.067575189 0.136101909 91.85083807 0.024609775 0.019947202 3.01E-07 6.521638387 0.099473546 (ac)DDDIAALVVDNGSGMCK ddPTM_HeLa_A486_30min_R1 2 DDDIAALVVDNGSGMCK 17 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8 C9JUM1;P60709 ACTB "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed" 0 0 ; ; 121.68 2.95E-105 144660000 257109 364322 295866 169652 555726 373144 397786 432273 290111 353033 FALSE FALSE TRUE 239086.9868 335451.7979 410433.2388 394958.4297 486021.6631 327109.2871 298255.7354 333853.8744 315258.0551 264631.2389 0.903472272 1.267619799 1.550962919 1.49248604 1.836599734 1.236094758 1.127061705 1.261581496 1.191310808 1 18.01362385 -6.504494259 24.64857436 1.16889993 1.426859275 0.228104778 0.229402864 1045.35401 1401538.157 0.086990439 0.075303398 3.13E-07 6.504494259 0.257959345 (ac)DSLLTRCLEK ddPTM_HeLa_A485_30min_R1 1 DSLLTRCLEK 10 1 A0A087X1L6 A0A087X1L6 EIF2D 0 0 40.987 0.012894 0 206250 133400 97021 382910 206160 202950 394650 331460 165470 557980 FALSE FALSE TRUE 252129.6009 148999.9696 132913.1053 403827.4037 185633.9865 213576.1482 310329.8035 250168.9153 198678.3112 418885.8549 0.601905264 0.355705422 0.317301489 0.964051183 0.443161268 0.509867177 0.740845746 0.597224548 0.474301791 1 18.67619764 -14 0.212721133 3.116816574 0.497489064 0.349887474 0.180383447 172.1113927 1.718191915 155.9972038 0.380670683 1.00E-14 14 -2.61932751 (ac)EEEIAALVIDNGS(ph)GMCK ddPTM_HeLa_A485_30min_R1 1 EEEIAALVIDNGSGMCK 17 0 P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 ACTG1 "Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 EEEIAALVIDNGS(1)GMCK 60.918 2.72E-06 0 8197.4 9261.1 9838.9 19504 14465 8941.1 15808 14219 10643 19351 TRUE FALSE FALSE 10020.88335 10344.10508 13478.71854 20569.45413 13024.81381 9409.24217 12430.49166 10731.76796 12778.95248 14527.15183 0.689803718 0.712053209 0.927829398 1.415931655 0.896584132 0.647700408 0.855673005 0.73873861 0.879659869 1 13.82646426 -6.009453785 24.95665379 0.805778423 0.949328218 0.058607276 0.204202428 1230.880581 3249358.138 0.070381746 0.075572059 9.78E-07 6.009453785 0.143549795 (ac)EEEIAALVIDNGS(ph)GMCK ddPTM_HeLa_A486_30min_R1 1 EEEIAALVIDNGSGMCK 17 0 P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 ACTG1 "Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 EEEIAALVIDNGS(1)GMCK 74.296 3.86E-06 9980200 7693.8 11932 8141.8 7886.3 12300 12428 16134 13683 9651.4 16760 TRUE FALSE FALSE 7154.504351 10986.46486 11294.523 18359.70495 10757.21931 10894.75972 12097.10255 10567.6796 10487.99112 12563.18691 0.569481645 0.87449665 0.89901735 1.461389143 0.856249245 0.867197137 0.962900786 0.841162332 0.834819318 1 13.61691486 -4.274872814 2.323716629 0.968256509 0.48111091 0.317275406 0.174679591 0.72615526 4.783251421 0.048195247 0.710302465 5.31E-05 4.274872814 -0.487145599 (ac)EEEIAALVIDNGSGMCK ddPTM_HeLa_A485_30min_R1 4 EEEIAALVIDNGSGMCK 17 0 P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 ACTG1 "Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 102.4 1.01E-17 71085000 100231 105788 104621 116711 155355 116307 156189 161262 117302 164453 FALSE FALSE TRUE 122527.0402 118158.9864 143324.6615 123086.6264 139887.3107 122396.6547 122817.9442 121712.2417 140843.4354 123457.8936 0.992460154 0.957079235 1.160919382 0.996992762 1.133077089 0.991404041 0.994816456 0.985860345 1.14082163 1 16.91365956 (ac)EEEIAALVIDNGSGMCK ddPTM_HeLa_A486_30min_R1 4 EEEIAALVIDNGSGMCK 17 0 P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 ACTG1 "Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 109.24 1.40E-34 67799000 64878.9 81816.2 62576.94 45948.71 146513.2 81580.1 94646.2 100645.4 69731.3 75778.8 FALSE FALSE TRUE 60331.22414 75332.78634 86808.40704 106970.919 128136.1483 71515.57671 70964.71969 77730.63949 75775.66523 56803.29524 1.062107821 1.32620451 1.528228365 1.883181575 2.255787234 1.259004014 1.24930639 1.368417786 1.334001221 1 15.793687 -7.575825326 0.869833434 1.065418115 1.569323036 0.197713915 0.323292038 1.027623145 1.540838243 0.338173089 0.130568852 2.66E-08 7.575825326 0.503904921 (ac)GDKKS(ph)PTRPK ddPTM_HeLa_A485_30min_R1 2 GDKKSPTRPK 10 3 Q8IY57;Q8IY57-5;G3V1X5;A0A0B4J255;F8VRE5;G3V219;G3V212;Q8IY57-4 Q8IY57 YAF2 YY1-associated factor 2 1 0 GDKKS(0.951)PT(0.049)RPK;GDKKS(0.841)PT(0.159)RPK ; 54.65 0.00097709 7258200000 2039400 1335200 668370 3445100 1655300 1767800 3274100 3687700 1520300 4784300 TRUE FALSE FALSE 2493057.494 1491340.025 915627.8762 3633297.09 1490492.52 1860359.274 2574561.788 2783285.793 1825410.265 3591662.059 0.694123627 0.415222814 0.254931522 1.011592135 0.414986849 0.517966124 0.716816267 0.774929753 0.508235529 1 21.77622018 -14 0.152276953 2.50137412 0.463997675 0.272463892 0.204633814 177.3440727 1.59031973 80.21138051 0.991137341 1.00E-14 14 -2.037376445 (ac)GDKKS(ph)PTRPK ddPTM_HeLa_A486_30min_R1 4 GDKKSPTRPK 10 3 Q8IY57;Q8IY57-5;G3V1X5;A0A0B4J255;F8VRE5;G3V219;G3V212;Q8IY57-4 Q8IY57 YAF2 YY1-associated factor 2 1 0 GDKKS(0.897)PT(0.103)RPK;GDKKS(0.816)PT(0.184)RPK;GDKKS(0.86)PT(0.14)RPK;GDKKS(0.941)PT(0.059)RPK ;;; 61.641 0.00057574 7203280000 2512400 1260880 816330 1791800 1699830 3545450 4120240 3171420 1812460 4314680 TRUE FALSE FALSE 2336293.734 1160963.277 1132434.838 4171400.953 1486621.471 3108048.426 3089312.373 2449356.898 1969565.492 3234256.044 0.72235893 0.35895837 0.350137658 1.289755943 0.459648664 0.960977852 0.955184849 0.757316942 0.608970182 1 21.62500247 -5.213861852 24.9999765 0.842862808 0.465332198 0.358489874 0.234626985 439.7104863 231048.541 0.061042265 0.105728025 6.11E-06 5.213861852 -0.37753061 (ac)GDS(ph)DDEYDRR ddPTM_HeLa_A485_30min_R1 5 GDSDDEYDRR 10 1 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 GDS(1)DDEYDRR;GDS(1)DDEYDRR;GDS(1)DDEYDRR;GDS(1)DDEYDRR;GDS(1)DDEYDRR ;;;; 80.165 1.38E-06 1.02E+11 85124.5 146578 120853 69269.2 129499 108236 139888 151261 117776 107328 TRUE FALSE FALSE 104060.1513 163719.022 165561.5538 73053.201 116605.6249 113903.0696 109999.786 114164.0026 141412.5629 80573.10483 1.291499832 2.031931404 2.054799231 0.906669802 1.447202824 1.413661169 1.365217168 1.416899632 1.755083948 1 16.29801073 -5.244151599 24.9987434 1.356549324 1.816662267 0.334845625 0.2970508 959.7198725 1387787.015 0.079150323 0.136664177 5.70E-06 5.244151599 0.460112944 (ac)GDS(ph)DDEYDRR ddPTM_HeLa_A486_30min_R1 5 GDSDDEYDRR 10 1 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 GDS(1)DDEYDRR;GDS(1)DDEYDRR;GDS(0.998)DDEY(0.002)DRR;GDS(1)DDEYDRR;GDS(1)DDEYDRR ;;;; 93.162 1.70E-06 36078820000 134668 127415 165521 55717.8 211251 144328 157837 160064 118120 124240 TRUE FALSE FALSE 125228.4686 117318.1714 229615.164 129713.8542 184753.9297 126522.2788 118344.5132 123620.9214 128358.7367 93129.49533 1.344670324 1.259731634 2.465547174 1.392833213 1.983839052 1.358562916 1.270752222 1.327408904 1.378282318 1 16.50695054 -6.442500155 7.55048906 1.277224937 1.691743311 0.278552514 0.342092284 0.415880017 34.70864484 0.120912528 0.1062086 3.61E-07 6.442500155 0.414518373 (ac)GDS(ph)DDEYDRRR ddPTM_HeLa_A485_30min_R1 1 GDSDDEYDRRR 11 2 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 GDS(1)DDEYDRRR 89.629 5.54E-05 2786900000 0 10166 0 0 13053 0 0 10451 0 0 TRUE FALSE FALSE 0 11354.82527 0 0 11753.39749 0 0 7887.875863 0 0 0 (ac)GDS(ph)DDEYDRRR ddPTM_HeLa_A486_30min_R1 2 GDSDDEYDRRR 11 2 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 GDS(1)DDEYDRRR;GDS(1)DDEYDRRR ; 77.912 0.00027468 3715500000 0 11035 10056 0 9519.1 21587.4 8820.1 7824.4 0 0 TRUE FALSE FALSE 0 10160.54641 13949.95251 0 8325.125716 18924.16607 6613.21769 6042.954925 0 0 0 (ac)GKFMKPGK ddPTM_HeLa_A485_30min_R1 2 GKFMKPGK 8 2 P61353;K7EQQ9;K7ERY7 P61353 RPL27 60S ribosomal protein L27 0 0 ; ; 40.432 0.011048 105428000 111663 125039 107723 86109 129322 130566 167885 221340 126009 152416 FALSE FALSE TRUE 136502.0491 139661.2234 147574.2204 90812.91663 116446.2476 137402.2339 132014.9983 167056.018 151297.8505 114421.4962 1.192975565 1.220585537 1.289742097 0.793670068 1.017695551 1.200842835 1.153760461 1.460005536 1.322285195 1 16.80399859 -7.029875152 19.91922579 1.296064537 1.117617669 0.114084467 0.168219887 102.8012636 68539.82464 0.081391302 0.047206729 9.34E-08 7.029875152 -0.178446867 (ac)GS(ph)PLRFDGR ddPTM_HeLa_A485_30min_R1 2 GSPLRFDGR 9 1 A0A2R8YD50;P51659-3;P51659;E7ER27;A0A2R8YEG2;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 1 0 GS(1)PLRFDGR;GS(1)PLRFDGR ; 43.769 0.001954 1435420000 67547 82254 61412 77404 94205 100880 99893 106142 81123 92014 TRUE FALSE FALSE 82572.59712 91872.88979 84130.85437 81632.38452 84825.61943 106161.9208 78550.0445 80110.50808 97403.642 69076.60319 1.195377209 1.330014586 1.217935603 1.18176605 1.227993496 1.53687234 1.137143995 1.159734329 1.410081525 1 16.07590952 -10.29274551 3.739084032 0.999402278 1.264182876 0.309986244 0.119165173 81532793.52 120311817.5 535006.589 0.029509447 5.10E-11 10.29274551 0.264780598 (ac)GS(ph)PLRFDGR ddPTM_HeLa_A486_30min_R1 2 GSPLRFDGR 9 1 A0A2R8YD50;P51659-3;P51659;E7ER27;A0A2R8YEG2;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 1 0 GS(1)PLRFDGR;GS(1)PLRFDGR ; 51.736 0.0020363 763320000 67152 56412 59793 45083 81936 61120 56805 70533 39704 92699 TRUE FALSE FALSE 62444.99157 51941.70767 82946.45091 104955.5024 71658.82286 53579.63582 42591.78818 54474.17562 43145.57469 69486.56703 0.898662781 0.747507179 1.193704833 1.510443052 1.031261522 0.771079046 0.612949956 0.783952611 0.620919647 1 16.08444649 -6.248655279 4.525747607 0.732373336 1.092007119 0.362429965 0.210782568 0.231087296 12.62354506 0.079781568 0.075725451 5.64E-07 6.248655279 0.359633782 (ac)MAAPEEHDS(ph)PTEAS(ph)QPIVEEEET(ph)K ddPTM_HeLa_A486_30min_R1 1 MAAPEEHDSPTEASQPIVEEEETK 24 0 F5H1N9;Q9H0S4-2;Q9H0S4 F5H1N9 DDX47 Probable ATP-dependent RNA helicase DDX47 3 0 MAAPEEHDS(0.972)PT(0.215)EAS(0.814)QPIVEEEET(1)K 51.645 0.0014831 790740000 300700 268620 192410 26086 307520 311470 275420 322620 263360 166820 TRUE FALSE FALSE 279622.4828 247333.5729 266916.3049 60729.52631 268947.9741 273043.9982 206507.0029 249166.4687 286188.2568 125047.1862 2.236135745 1.977921939 2.134524679 0.485652882 2.150771899 2.183527727 1.651432625 1.992579572 2.288642116 1 16.93211307 (ac)MALDSDLWSRLEEK ddPTM_HeLa_A486_30min_R1 2 MALDSDLWSRLEEK 14 1 A0A2Y9D085;A0A1B0GTZ6 A0A2Y9D085 0 0 ; ; 54.608 0.0049479 0 223931 149525 59890 57030 128610 188325 237679 219238 108466 260035 FALSE FALSE TRUE 208234.5933 137676.0944 83081.01191 132768.7221 112478.5346 165091.3762 178209.2003 169322.2933 117867.9202 194920.5435 1.068305011 0.706319057 0.426230147 0.681142787 0.577048127 0.846967556 0.91426587 0.868673411 0.604697269 1 17.57252662 -6.286298541 23.1701723 0.842922037 0.677268195 0.158192686 0.177208042 590.0111651 549921.1402 0.064116347 0.056580838 5.17E-07 6.286298541 -0.165653842 (ac)MDDS(ph)EVESTASILASVK ddPTM_HeLa_A485_30min_R1 1 MDDSEVESTASILASVK 17 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-2;C9JZR2;O60716-6;O60716-4 O60716-5 CTNND1 Catenin delta-1 1 0 MDDS(0.898)EVES(0.049)T(0.049)AS(0.004)ILASVK 54.7 0.0021776 8585400 3481.9 2507.6 1861.8 3702.7 3293.9 2828.5 3210.1 4647.2 2533.2 4289.6 TRUE FALSE FALSE 4256.436643 2800.842007 2550.557296 3904.969125 2965.94775 2976.595886 2524.235911 3507.466913 3041.590004 3220.281664 1.321759115 0.86975063 0.792029258 1.212617259 0.921021221 0.924327806 0.783855629 1.089180165 0.944510549 1 11.65297116 (ac)MDEET(ph)RHSLECIQANQIFPR ddPTM_HeLa_A485_30min_R1 1 MDEETRHSLECIQANQIFPR 20 1 Q13615-3;Q13615-2;Q13615;C9JLU3 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 MDEET(0.5)RHS(0.5)LECIQANQIFPR 54.103 1.49E-09 40444000 1814.1 5405.5 2743.7 3895.1 3440.3 3433.4 8671.9 2724.3 2459.1 3983.6 TRUE FALSE FALSE 2217.640286 6037.626203 3758.708805 4107.87945 3097.771652 3613.167515 6819.077722 2056.161153 2952.618814 2990.561833 0.741546375 2.01889362 1.256857077 1.373614618 1.035849391 1.208190205 2.280199542 0.687550122 0.987312411 1 11.54620083 (ac)MDEET(ph)RHSLECIQANQIFPR ddPTM_HeLa_A486_30min_R1 2 MDEETRHSLECIQANQIFPR 20 1 Q13615-3;Q13615-2;Q13615;C9JLU3 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 MDEET(0.5)RHS(0.5)LECIQANQIFPR;MDEET(0.5)RHS(0.5)LECIQANQIFPR ; 71.594 1.64E-13 92440000 11556.6 13298.8 14557.7 5852.7 20866.7 12264 11027.6 14079.7 11417.9 11581.3 TRUE FALSE FALSE 10746.54202 12244.95465 20194.83131 13625.38138 18249.40391 10750.99237 8268.377842 10874.05967 12407.61277 8681.267098 1.23790017 1.410503158 2.326253884 1.569515282 2.102159017 1.238412809 0.952439056 1.252588999 1.429239836 1 13.08368992 -6.398308823 7.309827129 1.168357888 1.734648782 0.432454956 0.318569283 0.267656826 14.78863266 0.115692578 0.101757471 4.00E-07 6.398308823 0.566290894 (ac)MDEETRHS(ph)LECIQANQIFPR ddPTM_HeLa_A485_30min_R1 1 MDEETRHSLECIQANQIFPR 20 1 Q13615-3;Q13615-2;Q13615;C9JLU3 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 MDEET(0.239)RHS(0.761)LECIQANQIFPR 75.97 4.48E-20 67664000 0 7835.7 11499 8765.3 8663 4255.3 12173 8140.3 8312.4 9748.7 TRUE FALSE FALSE 0 8752.016953 15752.95861 9244.126144 7800.481302 4478.100928 9572.139106 6143.878662 9980.622434 7318.528502 0 1.195871131 2.152476227 1.263112679 1.065853785 0.611885426 1.307932203 0.839496445 1.363747157 1 12.83733789 -5.857944781 5.737751234 1.012861278 1.226260266 0.004931376 0.525917601 0.954215058 46.73932678 0.171386918 0.196006326 1.39E-06 5.857944781 0.213398988 (ac)MDEPS(ph)PLAQPLELNQHSR ddPTM_HeLa_A485_30min_R1 4 MDEPSPLAQPLELNQHSR 18 0 Q13085;A0A0C4DGT1;A0A087X2F8;A0A087X126 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR ;;; 125.82 2.70E-25 1154740000 13286.2 18878.7 31054.8 34208.6 15450.3 28047.7 32638.7 31952.6 23808.7 31726 TRUE FALSE FALSE 16241.66935 21086.39974 42543.26282 36077.3292 13912.01388 29516.2342 25665.17511 24116.17475 28586.8877 23817.29207 0.681927622 0.885339932 1.786234249 1.514753612 0.584114006 1.239277501 1.077585774 1.012548978 1.200257679 1 14.53972177 -5.718903002 24.99999846 1.033534174 1.234023625 0.077926322 0.329507001 435.6134228 256021.944 0.103795853 0.133998775 1.91E-06 5.718903002 0.200489451 (ac)MDEPS(ph)PLAQPLELNQHSR ddPTM_HeLa_A486_30min_R1 4 MDEPSPLAQPLELNQHSR 18 0 Q13085;A0A0C4DGT1;A0A087X2F8;A0A087X126 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR ;;; 114.27 4.13E-12 934290000 26394.9 14294.5 15251.9 22971.6 37925.8 14973.2 38106 38479.6 13356.6 34669.6 TRUE FALSE FALSE 24544.75381 13161.75176 21157.84414 53479.04572 33168.79252 13125.95882 28571.47576 29718.63508 14514.36084 25988.1065 0.944461029 0.506452895 0.814135656 2.057827711 1.276306626 0.505075613 1.099405828 1.143547533 0.558500129 1 14.6655639 -7.744286857 24.956779 0.779249807 1.043361437 0.05736869 0.428298137 720.6315083 1048522.087 0.312864714 0.117609027 1.80E-08 7.744286857 0.26411163 (ac)MDIAIHHPWIR ddPTM_HeLa_A485_30min_R1 1 MDIAIHHPWIR 11 0 E9PS12;E9PJL7;E9PRA8;P02511 E9PS12 CRYAB Alpha-crystallin B chain 0 0 48.44 0.031741 6655600 6515 5981.6 8754.4 3884.7 5590.9 8822.9 6277.2 10291 6955.1 6314.6 FALSE FALSE TRUE 7964.239274 6681.096087 11993.01686 4096.911324 5034.250365 9284.853401 4936.02494 7767.116114 8350.924774 4740.486432 1.680046845 1.409369309 2.529912707 0.864238593 1.061969154 1.958628832 1.041248617 1.638463948 1.761617694 1 12.21081939 -5.277956833 24.99313819 1.361617173 1.826735725 0.245043674 0.430559577 1302.012363 1970117.789 0.121279084 0.180473682 5.27E-06 5.277956833 0.465118552 (ac)MDLAAAAEPGAGS(ph)QHLEVR ddPTM_HeLa_A485_30min_R1 4 MDLAAAAEPGAGSQHLEVR 19 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR ;;; 155.88 2.10E-79 3504900000 68587.1 58848.1 45090.9 78590.3 99135.3 70567.5 131315.2 141226.2 60340.6 103769 TRUE FALSE FALSE 83844.06377 65729.87338 61771.9003 82883.48909 89265.04145 74262.30518 103258.6348 106590.253 72450.40494 77901.29803 1.076285837 0.843758385 0.792950848 1.063955174 1.145873608 0.953287135 1.325505959 1.368273132 0.930028212 1 16.24935975 -5.459740449 4.910643929 1.138599029 0.899327526 0.283489863 0.151925365 0.257557828 12.38176797 0.044685836 0.065949209 3.47E-06 5.459740449 -0.239271502 (ac)MDLAAAAEPGAGS(ph)QHLEVR ddPTM_HeLa_A486_30min_R1 6 MDLAAAAEPGAGSQHLEVR 19 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR ;;;;; 142.97 7.77E-47 2865140000 84925.1 132282.6 119833 46108 178902 135039.7 128717.1 138829 94499.9 147142.1 TRUE FALSE FALSE 78972.28904 121800.045 166235.5468 107341.7542 156462.443 118379.8748 96510.72015 107220.6673 102691.2274 110296.7604 0.715998264 1.104293948 1.507166178 0.973208585 1.418558826 1.073285148 0.875009563 0.972110757 0.93104482 1 16.75103089 -6.539287041 10.13005075 0.94653695 1.161675197 0.167667232 0.207765322 0.526297318 306.1552107 0.079153626 0.061954113 2.89E-07 6.539287041 0.215138247 (ac)MDLFGDLPEPERS(ph)PR ddPTM_HeLa_A485_30min_R1 3 MDLFGDLPEPERSPR 15 1 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 0 MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR ;; 89.466 7.33E-06 325509000 5543.5 6015.2 10213.3 13679.5 10048 6591.7 8374.8 8597.4 7074.2 12603 TRUE FALSE FALSE 6776.63245 6718.625315 13991.62468 14426.77645 9047.585839 6936.831219 6585.455564 6488.87417 8493.927052 9461.304041 0.716247192 0.710116204 1.47882624 1.52481903 0.956272603 0.733179189 0.696041004 0.685832961 0.89775437 1 13.20782333 -6.000632894 24.99956442 0.783874876 1.122503748 0.225042048 0.265237035 36.16584748 1428666.69 0.091672311 0.10275934 9.99E-07 6.000632894 0.338628872 (ac)MDLFGDLPEPERS(ph)PR ddPTM_HeLa_A486_30min_R1 5 MDLFGDLPEPERSPR 15 1 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 0 MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR ;;;; 94.119 9.47E-06 572285000 33505.1 22965.1 21077.13 21604.44 34149.49 30675.1 43239.5 31041.1 29290 46972.4 TRUE FALSE FALSE 31156.56551 21145.26184 29238.7592 50296.22815 29866.14253 26890.71804 32420.51976 23973.71915 31828.88078 35210.2053 0.884873157 0.600543554 0.830405814 1.428455975 0.848224038 0.763719433 0.92077054 0.680874166 0.903967486 1 15.10370602 -9.35424921 14.06372108 1.00003894 0.872308706 0.031826845 0.209150547 0 0 0.212554857 0.051552125 4.42E-10 9.35424921 -0.127730234 (ac)MDLFGDLPEPERS(ph)PRPAAGK ddPTM_HeLa_A485_30min_R1 14 MDLFGDLPEPERSPRPAAGK 20 2 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 0 MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK ;;;;;;;;;;;;; 155.05 1.02E-36 11008804000 2665703 2973484 2840434 3036781 3897471 3201714 3939098 4195800 2798070 3884819 TRUE FALSE FALSE 3258679.436 3321207.088 3891228.737 3202672.656 3509425.102 3369350.794 3097477.533 3166773.471 3359616.984 2916405.118 1.117361719 1.138801694 1.334255215 1.098157672 1.203339372 1.155309588 1.062087538 1.085848277 1.151971982 1 21.47575971 -6.638157224 4.690022583 1.082512742 1.180285858 0.328573322 0.06987218 0.274407862 10.05684931 0.027288262 0.020766986 2.30E-07 6.638157224 0.097773116 (ac)MDLFGDLPEPERS(ph)PRPAAGK ddPTM_HeLa_A486_30min_R1 14 MDLFGDLPEPERSPRPAAGK 20 2 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 0 MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK;MDLFGDLPEPERS(1)PRPAAGK ;;;;;;;;;;;;; 128.17 3.12E-35 12518929000 5078786 5716381 4348630 2419106 6794853 5810161 6866991 6806019 4608368 6113050 TRUE FALSE FALSE 4722789.328 5263394.151 6032535.996 5631801.023 5942579.177 5093362.409 5148797.22 5256437.048 5007825.049 4582302.491 1.030658569 1.148635246 1.316485764 1.22903301 1.296854407 1.111529066 1.123626655 1.147116992 1.092862171 1 22.12764127 -6.401562814 9.827209184 1.105222199 1.208796766 0.299709352 0.082724628 0.558665506 42.60497937 0.030596348 0.026964418 3.97E-07 6.401562814 0.103574567 (ac)MDNYADLS(ph)DTELTTLLR ddPTM_HeLa_A485_30min_R1 2 MDNYADLSDTELTTLLR 17 0 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 0 MDNY(0.002)ADLS(0.596)DT(0.398)ELT(0.003)T(0.001)LLR;MDNY(0.002)ADLS(0.834)DT(0.164)ELT(0.001)TLLR ; 66.335 1.18E-05 34627000 0 0 0 1327.4 0 0 1832.1 0 0 897.07 TRUE FALSE FALSE 0 0 0 1399.912501 0 0 1440.656868 0 0 673.4469583 0 0 0 2.078727186 0 0 2.139228413 0 0 1 9.395420511 -5.091969266 24.47812828 0.725839833 1.25E-07 0.162260936 0.77527579 92.19713782 24532.7981 0.211249129 0.365894481 8.09E-06 5.091969266 -0.725839708 (ac)MDNYADLS(ph)DTELTTLLR ddPTM_HeLa_A486_30min_R1 1 MDNYADLSDTELTTLLR 17 0 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 0 MDNY(0.003)ADLS(0.805)DT(0.19)ELT(0.002)TLLR 65.107 7.27E-05 18719000 0 0 0 0 0 0 0 1174 0 1453.7 TRUE FALSE FALSE 0 0 0 0 0 0 0 906.7058282 0 1089.684058 0 0 0 0 0 0 0 0.832081392 0 1 10.08969419 -8.284486628 0.542478451 1.012277151 2.12E-25 0.61652425 0.228093034 0.861461759 0.535815837 0.273755804 0.107465725 5.19E-09 8.284486628 -1.012277151 (ac)MDNYADLSDT(ph)ELTTLLR ddPTM_HeLa_A485_30min_R1 1 MDNYADLSDTELTTLLR 17 0 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 0 MDNYADLS(0.421)DT(0.576)ELT(0.003)T(0.001)LLR 76.151 1.97E-12 7119100 829.77 1141.6 1323.6 1212.2 2019.9 1362.1 1241 1575.9 975.09 1411.2 TRUE FALSE FALSE 1014.349474 1275.100189 1813.25472 1278.419417 1818.791664 1433.41745 975.850212 1189.408054 1170.781619 1059.413811 0.957462951 1.203590302 1.711564169 1.206723381 1.716790592 1.353028849 0.921122796 1.122703934 1.105122103 1 10.04905051 -6.711583706 9.061908305 1.047731034 1.377298738 0.3329055 0.221420308 0.382317012 65.09931112 0.086900917 0.067022687 1.94E-07 6.711583706 0.329567704 (ac)MDNYADLSDT(ph)ELTTLLR ddPTM_HeLa_A486_30min_R1 1 MDNYADLSDTELTTLLR 17 0 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 0 MDNYADLS(0.345)DT(0.653)ELT(0.001)TLLR 77.562 9.20E-19 10479000 909.41 0 1026.6 0 916.25 0 991.58 1455.3 914.65 0 TRUE FALSE FALSE 845.6650552 0 1424.127013 0 801.3253813 0 743.4761961 1123.959959 993.9325984 0 0 (ac)MDPQRS(ph)PLLEVK ddPTM_HeLa_A485_30min_R1 3 MDPQRSPLLEVK 12 1 A0A140T9E6;A2AB20;Q9BW19 A0A140T9E6 KIFC1 Kinesin-like protein KIFC1 1 0 MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK ;; 67.456 0.00056604 333999000 636880 645390 595560 750010 877870 721030 921650 966300 592410 1040010 TRUE FALSE FALSE 778551.7588 720862.7464 815882.4273 790981.1472 790466.1804 758782.0159 724731.9483 729313.4099 711301.2531 780754.647 0.997178514 0.923289729 1.044992086 1.013098225 1.01243865 0.971857188 0.92824545 0.934113441 0.911043253 1 19.57450973 -6.561005451 4.095987213 0.938230825 0.997266429 0.336194801 0.035961452 0.241679947 8.904280526 0.014289225 0.01116014 2.75E-07 6.561005451 0.059035605 (ac)MDPQRS(ph)PLLEVK ddPTM_HeLa_A486_30min_R1 8 MDPQRSPLLEVK 12 1 A0A140T9E6;A2AB20;Q9BW19 A0A140T9E6 KIFC1 Kinesin-like protein KIFC1 1 0 MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK;MDPQRS(1)PLLEVK ;;;;;;; 78.324 2.47E-05 3191772000 3469040 3760710 2645240 1529240 3937370 3749580 4401990 4358440 2846030 3944140 TRUE FALSE FALSE 3225878.21 3462697.643 3669547.77 3560148.004 3443508.34 3286994.943 3300565.542 3366118.356 3092726.172 2956501.672 1.091113271 1.171214505 1.241178994 1.20417588 1.164723962 1.111785247 1.116375334 1.13854776 1.046076247 1 21.49545966 -7.687196102 0.624590181 0.998545424 1.178392009 0.642393665 0.040905753 0.490259699 0.442518049 0.043679907 0.020426614 2.05E-08 7.687196102 0.179846585 (ac)MDRNPS(ph)PPPPGR ddPTM_HeLa_A485_30min_R1 3 MDRNPSPPPPGR 12 1 E9PL53;E9PMD2;J3KND1;E9PRZ1;Q96ER3 E9PL53 SAAL1 Protein SAAL1 1 0 MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR ;; 63.555 2.58E-05 8539450000 95685 156443 146224 116131 195708 187515 151560 204686 134858 158274 TRUE FALSE FALSE 116969.7981 174737.648 200318.3425 122474.9425 176222.6243 197332.9954 119177.9679 154486.4376 161922.7636 118819.2046 0.984435122 1.47061789 1.685908798 1.03076723 1.483115671 1.660783676 1.003019405 1.300180708 1.362765928 1 16.85840851 -9.247427241 0.473720842 0.948595576 1.36342517 0.138182666 0.244896145 12.19736226 2.915173934 1.385069339 0.131781238 5.66E-10 9.247427241 0.414829594 (ac)MDRNPS(ph)PPPPGR ddPTM_HeLa_A486_30min_R1 6 MDRNPSPPPPGR 12 1 E9PL53;E9PMD2;J3KND1;E9PRZ1;Q96ER3 E9PL53 SAAL1 Protein SAAL1 1 0 MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR ;;;;; 70.089 6.69E-08 10971530000 300022 313499 263739 114728.6 380215 320277 302165 317536 289836 337002 TRUE FALSE FALSE 278992.0071 288656.1975 365865.804 267093.9789 332524.8893 280764.4801 226560.121 245239.9846 314959.2178 252614.5057 1.104418 1.142674672 1.448316687 1.057318455 1.316333314 1.111434513 0.89686109 0.970807214 1.246797831 1 17.94657796 -6.520268914 24.99999992 1.023035784 1.214163059 0.302519894 0.132766508 129.5834647 1241325.628 0.049372243 0.038942302 3.02E-07 6.520268914 0.191127275 (ac)MDS(ph)PPKLTGETLIVHHIPLVHCQVPDR ddPTM_HeLa_A485_30min_R1 1 MDSPPKLTGETLIVHHIPLVHCQVPDR 27 1 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 MDS(0.984)PPKLT(0.016)GETLIVHHIPLVHCQVPDR 67.33 0.00061267 69361000 31149 32968 26270 28601 41150 31294 40721 46491 23288 41226 TRUE FALSE FALSE 38077.98759 36823.32082 35988.36619 30163.40021 37052.96151 32932.50545 32020.62569 35089.00935 27961.68799 30949.11691 1.230341651 1.189801988 1.162823685 0.974612629 1.197221931 1.064085465 1.034621627 1.133764477 0.903472887 1 14.91761062 -1 0.213400201 0.985564771 2.274690858 0.482054625 0.074898263 45.80023401 0.575074684 0.120254497 20.1475728 0.1 1 1.289126088 (ac)MDS(ph)PPKLTGETLIVHHIPLVHCQVPDR ddPTM_HeLa_A486_30min_R1 1 MDSPPKLTGETLIVHHIPLVHCQVPDR 27 1 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 MDS(0.998)PPKLT(0.002)GETLIVHHIPLVHCQVPDR 53.865 0.0030764 131020000 43362 59591 40290 25491 69446 59209 65719 65944 42320 63720 TRUE FALSE FALSE 40322.54772 54868.79213 55891.367 59344.33624 60735.43512 51904.39557 49275.4111 50929.99075 45988.33167 47764.09725 0.844202027 1.148745507 1.170154367 1.242446516 1.271570879 1.086682227 1.03164121 1.066281866 0.962822168 1 15.54363898 -6.604769049 4.017675696 1.02125024 1.146828624 0.200326858 0.111039279 0.37710573 11.72993394 0.046358223 0.035393235 2.48E-07 6.604769049 0.125578383 (ac)MDSAGQDINLNS(ph)PNKGLLSDSMTDVPVDTGVAAR ddPTM_HeLa_A485_30min_R1 3 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAAR 34 1 O43399-2;O43399-4;O43399-3;A0A087WZ51;O43399;O43399-5;O43399-7;A0A087WYR3 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 MDSAGQDINLNS(0.992)PNKGLLS(0.006)DS(0.002)MTDVPVDTGVAAR;MDSAGQDINLNS(0.983)PNKGLLS(0.014)DS(0.002)MTDVPVDTGVAAR;MDS(0.001)AGQDINLNS(0.746)PNKGLLS(0.11)DS(0.124)MT(0.019)DVPVDTGVAAR ;; 97.509 3.80E-51 491870000 156649 149127 123152 158097 181283 144335 197481 227098 123924 211113 TRUE FALSE FALSE 191495.0296 166566.1054 168711.0496 166733.4388 163233.828 151892.1574 155287.5711 171401.8594 148794.4101 158486.4143 1.2082741 1.050980339 1.064514269 1.05203616 1.029954704 0.958392289 0.979816294 1.081492443 0.938846467 1 17.27399965 -1.000000001 0.608458271 1.000531501 14.06970417 0.688486757 0.040629537 104.3512587 0.785345736 0.017938021 1817.400775 0.1 1.000000001 13.06917267 (ac)MDSAGQDINLNS(ph)PNKGLLSDSMTDVPVDTGVAAR ddPTM_HeLa_A486_30min_R1 2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAAR 34 1 O43399-2;O43399-4;O43399-3;A0A087WZ51;O43399;O43399-5;O43399-7;A0A087WYR3 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 MDSAGQDINLNS(0.999)PNKGLLS(0.001)DSMTDVPVDTGVAAR;MDSAGQDINLNS(0.989)PNKGLLS(0.008)DS(0.002)MTDVPVDTGVAAR ; 96.492 6.23E-51 282000000 106658 91241 76028 51415 110776 99240 132849 129717 81560 134124 TRUE FALSE FALSE 99181.82498 84010.73087 105468.0777 119696.7184 96881.44113 86996.7778 99608.77507 100183.2708 88629.68647 100538.4774 0.986506137 0.83560775 1.049031977 1.190556307 0.963625506 0.865308288 0.990752771 0.996466959 0.881549918 1 16.61738822 -5.982278498 24.9997908 0.945465905 1.013995473 0.113221223 0.091167758 609.341517 859596.3275 0.030559374 0.034645166 1.04E-06 5.982278498 0.068529568 (ac)MDT(ph)PLRR ddPTM_HeLa_A485_30min_R1 2 MDTPLRR 7 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 MDT(1)PLRR;MDT(1)PLRR ; 70.525 0.0035723 897040000 47193 110863 115621 44102 89283 95039 77165 98884 95371 66250 TRUE FALSE FALSE 57690.92004 123827.4635 158394.0193 46511.18059 80393.67103 100015.0951 60678.06737 74632.54396 114511.0849 49735.09424 1.159964024 2.4897402 3.184753577 0.935178294 1.616437493 2.010956179 1.220025181 1.500601237 2.302420185 1 15.60197659 -5.274715473 24.99786569 1.546036527 2.299311446 0.248805175 0.607557276 1087.213138 2047136.233 0.170956854 0.255282617 5.31E-06 5.274715473 0.753274918 (ac)MDT(ph)PLRR ddPTM_HeLa_A486_30min_R1 4 MDTPLRR 7 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 MDT(1)PLRR;MDT(1)PLRR;MDT(1)PLRR;MDT(1)PLRR ;;; 69.628 0.0030854 1017540000 209832 204859 163262 128115.9 194766 218136 273111 257279 180233 338185 TRUE FALSE FALSE 195123.8604 188625.2268 226481.4187 298260.2898 170336.6322 191224.5982 204775.7391 198702.1881 195855.7416 253501.2748 0.7697155 0.744079993 0.893413333 1.176563274 0.671935998 0.754333872 0.807789781 0.78383112 0.77260259 1 17.95163348 (ac)MDTDLYDEFGNYIGPELDS(ph)DEDDDELGR ddPTM_HeLa_A485_30min_R1 2 MDTDLYDEFGNYIGPELDSDEDDDELGR 28 0 Q15029-3;Q15029;K7EIV5;K7EIT3 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 1 0 MDTDLYDEFGNYIGPELDS(1)DEDDDELGR;MDTDLYDEFGNYIGPELDS(1)DEDDDELGR ; 186.07 2.05E-109 261320000 0 0 0 0 0 2142.8 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 2254.993695 0 0 0 0 0 (ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK ddPTM_HeLa_A485_30min_R1 4 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 2 0 MEDLDQS(0.998)PLVS(0.002)S(0.002)S(0.008)DS(0.99)PPRPQPAFK;MEDLDQS(0.998)PLVS(0.001)S(0.001)S(0.011)DS(0.989)PPRPQPAFK;MEDLDQS(0.999)PLVS(0.001)SS(0.001)DS(0.999)PPRPQPAFK;MEDLDQS(0.994)PLVS(0.006)S(0.002)S(0.006)DS(0.992)PPRPQPAFK ;;; 131.5 4.30E-29 453527000 463400 430764 370166 412492 524410 422887 450710 564940 356560 627810 TRUE FALSE FALSE 566481.7313 481138.1027 507105.8073 435025.3935 472197.8991 445028.7094 354412.1265 426387.5792 428118.3214 471308.521 1.20193399 1.020855939 1.075952979 0.923016186 1.00188704 0.944240746 0.751974791 0.904688883 0.908361089 1 18.84631224 -4.053969488 0.549878174 0.890836077 1.435964854 0.602606967 0.071288604 3.341331543 0.655567268 0.039692089 1.226033613 8.83E-05 4.053969488 0.545128777 (ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK ddPTM_HeLa_A486_30min_R1 3 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 2 0 MEDLDQS(0.998)PLVS(0.002)S(0.002)S(0.011)DS(0.986)PPRPQPAFK;MEDLDQS(0.998)PLVS(0.002)S(0.002)S(0.007)DS(0.992)PPRPQPAFK;MEDLDQS(0.999)PLVS(0.001)SS(0.005)DS(0.995)PPRPQPAFK ;; 108.1 1.02E-21 381776000 467755 468388 366211 133082 515820 434103 496263 444925 384004 431581 TRUE FALSE FALSE 434967.79 431271.229 508017.7067 309821.6216 451121.0458 380547.7855 372092.7485 343625.2901 417289.7759 323510.3085 1.344525286 1.333098877 1.57032927 0.957687015 1.394456479 1.176308067 1.150172773 1.062177251 1.289880925 1 18.30345216 -1 0.114971385 0.921009541 2.444518897 0.314755269 0.151427573 118.2015925 0.94353073 1.169720146 28.69654936 0.1 1 1.523509355 (ac)MEDLDQSPLVSSSDS(ph)PPRPQPAFK ddPTM_HeLa_A485_30min_R1 11 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 0 MEDLDQSPLVSSS(0.003)DS(0.996)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.998)PPRPQPAFK;MEDLDQSPLVSSS(0.001)DS(0.999)PPRPQPAFK;MEDLDQSPLVSSS(0.001)DS(0.999)PPRPQPAFK;MEDLDQSPLVS(0.003)S(0.019)S(0.129)DS(0.849)PPRPQPAFK;MEDLDQSPLVSS(0.001)S(0.006)DS(0.993)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK;MEDLDQSPLVSS(0.001)S(0.002)DS(0.997)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.998)PPRPQPAFK;MEDLDQSPLVSSS(0.004)DS(0.996)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK ;;;;;;;;;; 165.48 2.58E-75 13213183000 6529349 6432385 5079320 5746646 6312485 5707370 6637097 8140069 5040915 9705293 TRUE FALSE FALSE 7981780.159 7184596.471 6958371.836 6060570.72 5683991.829 6006199.068 5219027.006 6143704.315 6052580.402 7285942.068 1.095504203 0.986090255 0.955040786 0.831817034 0.780131351 0.824354491 0.716314645 0.843227171 0.830720358 1 22.79668409 -4.864695587 1.383839958 0.816114952 1.0866409 0.597709529 0.070427349 0.331209869 1.093207327 0.020984394 0.093022478 1.37E-05 4.864695587 0.270525948 (ac)MEDLDQSPLVSSSDS(ph)PPRPQPAFK ddPTM_HeLa_A486_30min_R1 11 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 0 MEDLDQSPLVSSS(0.001)DS(0.999)PPRPQPAFK;MEDLDQSPLVSS(0.001)S(0.003)DS(0.996)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK;MEDLDQSPLVSS(0.001)S(0.002)DS(0.997)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK;MEDLDQSPLVSSS(0.001)DS(0.999)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK;MEDLDQS(0.001)PLVS(0.016)S(0.108)S(0.108)DS(0.767)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK;MEDLDQSPLVSSS(0.002)DS(0.997)PPRPQPAFK;MEDLDQSPLVSSSDS(1)PPRPQPAFK ;;;;;;;;;; 175.76 3.81E-75 13447089000 5812288 5868428 4908957 1911685 6750500 5427772 6003296 5556528 5283890 5537853 TRUE FALSE FALSE 5404876.626 5403392.393 6809836.617 4450499.291 5903789.344 4758148.676 4501207.844 4291427.873 5741901.84 4151138.563 1.302022696 1.301665148 1.640474418 1.07211533 1.422209655 1.146227379 1.084330907 1.033795381 1.383211317 1 21.98507566 -6.323006553 7.172317189 1.127686848 1.345911835 0.3107808 0.162482716 0.344612979 34.9091219 0.055848792 0.049292561 4.75E-07 6.323006553 0.218224987 (ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK ddPTM_HeLa_A485_30min_R1 13 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.967)MDMDMS(0.033)PLRPQNYLFGCELK;MEDS(0.997)MDMDMS(0.003)PLRPQNYLFGCELK;MEDS(0.998)MDMDMS(0.002)PLRPQNYLFGCELK;MEDS(0.977)MDMDMS(0.023)PLRPQNYLFGCELK;MEDS(0.988)MDMDMS(0.012)PLRPQNYLFGCELK;MEDS(0.499)MDMDMS(0.499)PLRPQNY(0.001)LFGCELK;MEDS(0.868)MDMDMS(0.131)PLRPQNY(0.001)LFGCELK;MEDS(0.941)MDMDMS(0.058)PLRPQNY(0.001)LFGCELK;MEDS(0.947)MDMDMS(0.053)PLRPQNYLFGCELK;MEDS(0.99)MDMDMS(0.01)PLRPQNYLFGCELK;MEDS(0.879)MDMDMS(0.12)PLRPQNYLFGCELK;MEDS(0.5)MDMDMS(0.5)PLRPQNYLFGCELK;MEDS(0.494)MDMDMS(0.494)PLRPQNY(0.011)LFGCELK ;;;;;;;;;;;; 93.572 3.14E-38 2042252000 861196 762548 781314 1020170 1321405 894848 1211995 1216111 883910 1320968 TRUE FALSE FALSE 1052766.079 851721.3553 1070354.562 1075899.304 1189841.278 941700.8576 953042.3672 917857.8705 1061302.629 991674.9882 1.061603944 0.85887147 1.079340081 1.08493137 1.199829876 0.949606342 0.961043062 0.925563195 1.070212158 1 19.91950784 (ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK ddPTM_HeLa_A486_30min_R1 25 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.892)MDMDMS(0.108)PLRPQNYLFGCELK;MEDS(0.496)MDMDMS(0.496)PLRPQNY(0.009)LFGCELK;MEDS(0.849)MDMDMS(0.15)PLRPQNY(0.001)LFGCELK;MEDS(0.877)MDMDMS(0.123)PLRPQNYLFGCELK;MEDS(1)MDMDMSPLRPQNYLFGCELK;MEDS(0.98)MDMDMS(0.02)PLRPQNYLFGCELK;MEDS(0.915)MDMDMS(0.085)PLRPQNYLFGCELK;MEDS(0.96)MDMDMS(0.04)PLRPQNYLFGCELK;MEDS(0.644)MDMDMS(0.355)PLRPQNY(0.002)LFGCELK;MEDS(0.899)MDMDMS(0.101)PLRPQNYLFGCELK;MEDS(0.891)MDMDMS(0.109)PLRPQNYLFGCELK;MEDS(0.846)MDMDMS(0.151)PLRPQNY(0.003)LFGCELK;MEDS(0.543)MDMDMS(0.456)PLRPQNY(0.001)LFGCELK;MEDS(0.947)MDMDMS(0.052)PLRPQNY(0.001)LFGCELK;MEDS(0.956)MDMDMS(0.043)PLRPQNY(0.001)LFGCELK;MEDS(0.662)MDMDMS(0.338)PLRPQNYLFGCELK;MEDS(0.97)MDMDMS(0.029)PLRPQNYLFGCELK;MEDS(0.5)MDMDMS(0.5)PLRPQNYLFGCELK;MEDS(0.499)MDMDMS(0.499)PLRPQNY(0.002)LFGCELK;MEDS(0.499)MDMDMS(0.499)PLRPQNY(0.003)LFGCELK;MEDS(0.494)MDMDMS(0.494)PLRPQNY(0.011)LFGCELK;MEDS(0.997)MDMDMS(0.003)PLRPQNYLFGCELK;MEDS(0.741)MDMDMS(0.258)PLRPQNY(0.001)LFGCELK;MEDS(0.469)MDMDMS(0.529)PLRPQNY(0.001)LFGCELK;MEDS(0.499)MDMDMS(0.499)PLRPQNY(0.002)LFGCELK ;;;;;;;;;;;;;;;;;;;;;;;; 98.689 1.99E-61 4641531000 1888915 2420117 1829156 1164084.8 2762087 2639794 3039319 3141758 1933200 2619603 TRUE FALSE FALSE 1756511.813 2228338.115 2537454.19 2710048.244 2415640.293 2314123.056 2278849.24 2426448.287 2100771.333 1963637.358 0.894519452 1.134801243 1.292221387 1.380116462 1.230186563 1.178487996 1.160524488 1.235690632 1.069836711 1 20.90509709 -7.928998676 4.233501553 1.001280118 1.196176702 0.216161592 0.119347731 0.296681044 9.842302088 0.121863702 0.032020475 1.18E-08 7.928998676 0.194896584 (ac)MEDSMDMDMS(ph)PLRPQNYLFGCELK ddPTM_HeLa_A485_30min_R1 17 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.004)MDMDMS(0.996)PLRPQNYLFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDSMDMDMS(1)PLRPQNYLFGCELK;MEDS(0.004)MDMDMS(0.985)PLRPQNY(0.01)LFGCELK;MEDS(0.115)MDMDMS(0.869)PLRPQNY(0.016)LFGCELK;MEDS(0.05)MDMDMS(0.95)PLRPQNYLFGCELK;MEDS(0.012)MDMDMS(0.988)PLRPQNYLFGCELK;MEDS(0.018)MDMDMS(0.982)PLRPQNYLFGCELK;MEDS(0.141)MDMDMS(0.844)PLRPQNY(0.015)LFGCELK;MEDS(0.467)MDMDMS(0.533)PLRPQNY(0.001)LFGCELK;MEDS(0.015)MDMDMS(0.985)PLRPQNYLFGCELK;MEDS(0.217)MDMDMS(0.768)PLRPQNY(0.015)LFGCELK;MEDS(0.002)MDMDMS(0.998)PLRPQNYLFGCELK;MEDS(0.147)MDMDMS(0.853)PLRPQNYLFGCELK;MEDS(0.034)MDMDMS(0.966)PLRPQNYLFGCELK;MEDS(0.004)MDMDMS(0.852)PLRPQNY(0.145)LFGCELK;MEDS(0.055)MDMDMS(0.943)PLRPQNY(0.002)LFGCELK ;;;;;;;;;;;;;;;; 132.91 4.69E-75 4969633000 1480362 1487986 1506712 1929135 2244137 1680062 2343021 2392816 1691751 2592334 TRUE FALSE FALSE 1809663.42 1661993.019 2064107.468 2034518.76 2020702.841 1768027.448 1842415.423 1805974.124 2031269.908 1946112.842 0.929886171 0.854006501 1.060630927 1.045426923 1.038327684 0.908491743 0.946715618 0.927990446 1.043757517 1 20.89216393 -4.750507863 24.98068223 0.992177682 0.891946327 0.378467074 0.053330893 245.8450653 561793.8396 0.014727121 0.038154758 1.78E-05 4.750507863 -0.100231355 (ac)MEDSMDMDMS(ph)PLRPQNYLFGCELK ddPTM_HeLa_A486_30min_R1 17 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.467)MDMDMS(0.531)PLRPQNY(0.002)LFGCELK;MEDSMDMDMS(0.995)PLRPQNY(0.005)LFGCELK;MEDS(0.08)MDMDMS(0.887)PLRPQNY(0.033)LFGCELK;MEDS(0.001)MDMDMS(0.999)PLRPQNYLFGCELK;MEDS(0.02)MDMDMS(0.865)PLRPQNY(0.115)LFGCELK;MEDS(0.111)MDMDMS(0.887)PLRPQNY(0.002)LFGCELK;MEDS(0.213)MDMDMS(0.786)PLRPQNY(0.001)LFGCELK;MEDS(0.026)MDMDMS(0.973)PLRPQNY(0.001)LFGCELK;MEDS(0.12)MDMDMS(0.877)PLRPQNY(0.004)LFGCELK;MEDS(0.058)MDMDMS(0.932)PLRPQNY(0.01)LFGCELK;MEDS(0.002)MDMDMS(0.998)PLRPQNYLFGCELK;MEDS(0.002)MDMDMS(0.997)PLRPQNY(0.001)LFGCELK;MEDS(0.231)MDMDMS(0.768)PLRPQNY(0.001)LFGCELK;MEDS(0.34)MDMDMS(0.66)PLRPQNY(0.001)LFGCELK;MEDS(0.584)MDMDMS(0.414)PLRPQNY(0.002)LFGCELK;MEDS(0.247)MDMDMS(0.733)PLRPQNY(0.02)LFGCELK;MEDS(0.467)MDMDMS(0.531)PLRPQNY(0.002)LFGCELK ;;;;;;;;;;;;;;;; 110.18 1.85E-61 4728377000 1746829 2248424 1678899 1058631 2614138 2469826 2925330 2886992 1910592 2583338 TRUE FALSE FALSE 1624385.308 2070250.694 2329013.655 2464546.468 2286248.436 2165123.979 2193381.493 2229686.944 2076203.653 1936453.35 0.838845567 1.069094018 1.202721282 1.272711511 1.180636981 1.118087342 1.132679748 1.151428174 1.072168174 1 20.88498532 -4.317920066 2.990919715 1.151267367 0.806960852 0.621917634 0.070298055 0.205141335 2.848630835 0.018347847 0.156643267 4.81E-05 4.317920066 -0.344306516 (ac)MEDSMDMDMS(ph)PLRPQNYLFGCELKADK ddPTM_HeLa_A485_30min_R1 1 MEDSMDMDMSPLRPQNYLFGCELKADK 27 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.005)MDMDMS(0.995)PLRPQNYLFGCELKADK 76.956 4.93E-05 61878000 11093 22212 15926 7817.6 24183 38150 51490 105480 14671 14445 TRUE FALSE FALSE 13560.59958 24809.50018 21817.69014 8244.655693 21775.25561 40147.47501 40488.74087 79610.86461 17615.33513 10844.12734 1.250501691 2.287828186 2.011935995 0.760287613 2.008022861 3.702231978 3.733702085 7.341380465 1.624412419 1 13.40462634 -6.244677977 3.599479571 3.923982801 1.631536569 0.215489677 1.644786684 0.298869465 8.429893627 0.565912902 0.535294293 5.69E-07 6.244677977 -2.292446233 (ac)MEEGGRDKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_A485_30min_R1 4 MEEGGRDKAPVQPQQSPAAAPGGTDEKPSGK 31 3 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 MEEGGRDKAPVQPQQS(0.995)PAAAPGGT(0.005)DEKPSGK;MEEGGRDKAPVQPQQS(1)PAAAPGGTDEKPSGK;MEEGGRDKAPVQPQQS(0.998)PAAAPGGT(0.002)DEKPSGK;MEEGGRDKAPVQPQQS(0.998)PAAAPGGT(0.002)DEKPSGK ;;; 87.005 8.10E-40 5063020000 602164 796122 367362 565166 1066210 1361920 2140950 3458990 614178 1021970 TRUE FALSE FALSE 736113.3044 889221.5426 503264.491 596039.5875 960054.3887 1433228.025 1683518.543 2610667.279 737437.891 767211.687 0.959465708 1.159030236 0.655965621 0.776890652 1.251355271 1.868099834 2.194333808 3.402799154 0.961192202 1 19.54926517 -6.200140341 2.511655151 2.082060549 0.896226902 0.323226997 0.659397183 0.295569803 3.665343868 0.238917765 0.230203523 6.31E-07 6.200140341 -1.185833646 (ac)MEEGGRDKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_A486_30min_R1 3 MEEGGRDKAPVQPQQSPAAAPGGTDEKPSGK 31 3 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 MEEGGRDKAPVQPQQS(1)PAAAPGGTDEKPSGK;MEEGGRDKAPVQPQQS(0.999)PAAAPGGT(0.001)DEKPSGK;MEEGGRDKAPVQPQQS(1)PAAAPGGTDEKPSGK ;; 115.87 1.79E-77 3349240000 1260839 783295 439647 792260 1396823 1004034 1977940 1941420 552257 1933540 TRUE FALSE FALSE 1172460.697 721223.8515 609890.0926 1844421.319 1221620.434 880166.4933 1483038.491 1499401.047 600127.0814 1449368.999 0.808945616 0.497612307 0.420796977 1.27256849 0.842863643 0.607275645 1.023230449 1.034519883 0.414060934 1 20.46699351 -5.223907121 24.99767633 0.878810543 0.567967702 0.253234987 0.243008229 802.4050892 534426.2885 0.065270872 0.113049474 5.97E-06 5.223907121 -0.310842841 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPKLS(ph)PHK ddPTM_HeLa_A485_30min_R1 3 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHK 32 2 Q9GZP8;Q9GZP8-2 Q9GZP8 IMUP Immortalization up-regulated protein 1 0 MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHK;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHK;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(0.999)PHK ;; 110.13 1.44E-21 3173870000 1625113 779693 725790 3336572 1702177 1305680 2317669 1546322 1250911 4748420 TRUE FALSE FALSE 1986613.78 870871.3139 994289.9236 3518840.48 1532702.281 1374043.386 1822480.085 1167084.105 1501957.364 3564726.282 0.557297706 0.244302436 0.27892462 0.987127819 0.429963526 0.38545551 0.511253864 0.327397958 0.421338763 1 21.76535987 -10.22931528 5.117993098 1.000061536 0.458635658 0.39895963 0.198704163 556505218.8 45.47798776 403567.7979 0.04915394 5.90E-11 10.22931528 -0.541425878 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPKLS(ph)PHK ddPTM_HeLa_A486_30min_R1 3 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHK 32 2 Q9GZP8;Q9GZP8-2 Q9GZP8 IMUP Immortalization up-regulated protein 1 0 MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHK;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHK;MEFDLGAALEPT(0.003)S(0.012)QKPGVGAGHGGDPKLS(0.985)PHK ;; 156.18 1.95E-51 9826840000 1814020 1958890 909510 1147480 1674710 2820340 3586270 3191900 1810440 3018470 TRUE FALSE FALSE 1686866.566 1803660.422 1261696.63 2671391.43 1464652.256 2472395.126 2688947.314 2465174.049 1967370.397 2262625.465 0.74553504 0.797153771 0.557625046 1.180660022 0.647324216 1.092710731 1.188419098 1.089519272 0.869507759 1 21.10956636 -5.65382445 1.013408585 1.047636251 0.719350739 0.320487879 0.176529807 0.64427525 1.394049044 0.076900699 0.135523948 2.22E-06 5.65382445 -0.328285512 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPKLS(ph)PHKVQGR ddPTM_HeLa_A485_30min_R1 7 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGR 36 3 Q9GZP8;Q9GZP8-2 Q9GZP8 IMUP Immortalization up-regulated protein 1 0 MEFDLGAALEPTSQKPGVGAGHGGDPKLS(0.999)PHKVQGR;MEFDLGAALEPT(0.001)S(0.001)QKPGVGAGHGGDPKLS(0.999)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR;MEFDLGAALEPT(0.001)S(0.003)QKPGVGAGHGGDPKLS(0.996)PHKVQGR;MEFDLGAALEPT(0.001)S(0.002)QKPGVGAGHGGDPKLS(0.997)PHKVQGR;MEFDLGAALEPTS(0.001)QKPGVGAGHGGDPKLS(0.999)PHKVQGR;MEFDLGAALEPT(0.031)S(0.031)QKPGVGAGHGGDPKLS(0.939)PHKVQGR ;;;;;; 146.5 6.31E-65 22186730000 5647190 4777342 2693527 7003700 6509889 7010259 11561850 12267320 4823401 11165650 TRUE FALSE FALSE 6903387.933 5336010.59 3689974.724 7386294.397 5861741.594 7377305.321 9091566.296 9258740.536 5791413.338 8382258.944 0.823571305 0.63658384 0.440212447 0.881181844 0.69930333 0.880109452 1.084620072 1.104563889 0.690913199 1 22.99890766 -6.242520477 1.796266872 0.979671581 0.670983955 0.414928193 0.152924906 0.34280724 2.181987372 0.064097625 0.059357751 5.72E-07 6.242520477 -0.308687625 (ac)MEFDLGAALEPTSQKPGVGAGHGGDPKLS(ph)PHKVQGR ddPTM_HeLa_A486_30min_R1 8 MEFDLGAALEPTSQKPGVGAGHGGDPKLSPHKVQGR 36 3 Q9GZP8;Q9GZP8-2 Q9GZP8 IMUP Immortalization up-regulated protein 1 0 MEFDLGAALEPTS(0.001)QKPGVGAGHGGDPKLS(0.999)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR;MEFDLGAALEPT(0.004)S(0.004)QKPGVGAGHGGDPKLS(0.992)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR;MEFDLGAALEPT(0.013)S(0.047)QKPGVGAGHGGDPKLS(0.94)PHKVQGR;MEFDLGAALEPT(0.001)S(0.005)QKPGVGAGHGGDPKLS(0.994)PHKVQGR;MEFDLGAALEPT(0.003)S(0.003)QKPGVGAGHGGDPKLS(0.994)PHKVQGR;MEFDLGAALEPTSQKPGVGAGHGGDPKLS(1)PHKVQGR ;;;;;;; 131.01 2.59E-51 51429410000 6756970 5194230 2530340 3504350 5816760 7022780 10318640 9767790 4288620 10581590 TRUE FALSE FALSE 6283341.296 4782620.298 3510155.413 8158303.9 5087167.722 6156380.806 7736807.133 7543877.446 4660361.035 7931890.989 0.792161832 0.602960921 0.442537021 1.028544632 0.641356233 0.776155499 0.975405126 0.951081836 0.587547287 1 22.91923342 -5.25890756 24.99988989 0.842677937 0.611594033 0.314553223 0.161236307 283.1408571 2795797.117 0.044018111 0.07190154 5.51E-06 5.25890756 -0.231083903 (ac)MEGISNFKT(ph)PSK ddPTM_HeLa_A485_30min_R1 2 MEGISNFKTPSK 12 1 Q96KB5;Q96KB5-2;E5RIE1 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 MEGIS(0.072)NFKT(0.894)PS(0.034)K;MEGIS(0.001)NFKT(0.915)PS(0.083)K ; 69.602 0.00056582 407150000 364520 240224 164265 521830 388580 297810 445230 383630 240338 640790 TRUE FALSE FALSE 445606.2164 268316.1071 225033.4591 550336.2516 349891.6108 313402.8711 350102.9733 289544.141 288571.6321 481052.8459 0.926314479 0.557768464 0.467793634 1.144024521 0.727345475 0.651493643 0.72778485 0.601896743 0.599875117 1 18.87583586 -6.00069378 24.99999947 0.691759521 0.761539652 0.009524965 0.203888268 135.5262182 4883934.33 0.06457301 0.072360182 9.98E-07 6.00069378 0.069780131 (ac)MEGISNFKT(ph)PSK ddPTM_HeLa_A486_30min_R1 2 MEGISNFKTPSK 12 1 Q96KB5;Q96KB5-2;E5RIE1 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 MEGIS(0.207)NFKT(0.774)PS(0.019)K;MEGIS(0.002)NFKT(0.983)PS(0.015)K ; 96.059 7.08E-06 624020000 772790 854740 406700 429050 723460 1032720 1261900 1152940 607910 1192640 TRUE FALSE FALSE 718621.4117 787007.2895 564185.1318 998850.083 632716.9008 905313.5063 946159.273 890440.7305 660604.1283 893995.1812 0.803831415 0.880326098 0.631082967 1.117287994 0.70774084 1.012660387 1.05834941 0.996024083 0.738934775 1 19.76990753 -5.256846619 24.99983268 0.944490298 0.782604768 0.258473813 0.135819533 586.691272 3193531.937 0.036473934 0.060594824 5.54E-06 5.256846619 -0.16188553 (ac)MEITIRNS(ph)PYR ddPTM_HeLa_A485_30min_R1 2 MEITIRNSPYR 11 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEITIRNS(1)PYR;MEITIRNS(1)PYR ; 97.749 2.27E-11 357570000 47775 50313 62350 55839 74387 65539 64683 68958 73286 72649 TRUE FALSE FALSE 58402.38393 56196.66769 85415.8596 58889.34318 66980.76909 68970.5207 50862.94864 52045.94238 87993.82798 54538.94131 1.07083824 1.03039528 1.566144438 1.079766893 1.228127417 1.264610553 0.932598753 0.954289561 1.613412836 1 15.73499907 (ac)MEITIRNS(ph)PYR ddPTM_HeLa_A486_30min_R1 3 MEITIRNSPYR 11 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEIT(0.018)IRNS(0.982)PYR ;; 93.839 1.46E-08 444496000 121586 156850 140638 38857.5 165576 125943 130939 151846 119617 120529 TRUE FALSE FALSE 113063.4493 144420.6348 195096.8 90462.22375 144807.9141 110405.4332 98176.67727 117273.9806 129985.4979 90347.75389 1.251425126 1.598497235 2.159398453 1.001266992 1.602783776 1.22200529 1.086653215 1.298028734 1.438724177 1 16.46320111 -5.285233834 24.99462009 1.256577415 1.662646165 0.347904857 0.271260074 892.634409 937655.8764 0.076116835 0.112971477 5.19E-06 5.285233834 0.40606875 (ac)MEITIRNS(ph)PYRR ddPTM_HeLa_A485_30min_R1 2 MEITIRNSPYRR 12 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEIT(0.033)IRNS(0.966)PYRR;MEIT(0.009)IRNS(0.991)PYRR ; 88.561 1.62E-07 658640000 28773 21557.3 23486 7061.8 17722.8 15818.3 16975.8 15823.2 13733.9 17131.8 TRUE FALSE FALSE 35173.45458 24078.23871 32174.44873 7447.568253 15958.2558 16646.52173 13348.78165 11942.53539 16490.16776 12861.15755 2.734859164 1.872167309 2.501675966 0.57907449 1.240810226 1.29432531 1.03791448 0.928573913 1.282168241 1 13.65073288 -5.252801884 24.9962666 1.066259325 2.319827547 0.820402246 0.282191256 251.6853831 728357.1168 0.073545256 0.124871193 5.59E-06 5.252801884 1.253568222 (ac)MEITIRNS(ph)PYRR ddPTM_HeLa_A486_30min_R1 3 MEITIRNSPYRR 12 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEIT(0.004)IRNS(0.996)PYRR;MEIT(0.006)IRNS(0.994)PYRR;MEIT(0.001)IRNS(0.999)PYRR ;; 108.71 3.40E-10 730680000 46187 38736.6 25347.8 9479.8 38501 25503.1 28398.2 33713.8 27380.8 26748.1 TRUE FALSE FALSE 42949.52981 35666.97074 35163.147 22069.45348 33671.84557 22356.78682 21292.66999 26037.90371 29754.18979 20050.20166 2.142099643 1.778883392 1.753755279 1.100709801 1.679376903 1.115040497 1.061967872 1.298635503 1.483984565 1 14.29132913 -4.371811989 0.687479296 1.218759724 2.626894737 0.67840772 0.207794736 1.595769117 0.635169648 0.091614032 1.719205648 4.25E-05 4.371811989 1.408135013 (ac)MEPAPARS(ph)PRPQQDPARPQEPTMPPPETPSEGR ddPTM_HeLa_A485_30min_R1 3 MEPAPARSPRPQQDPARPQEPTMPPPETPSEGR 33 3 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 MEPAPARS(0.997)PRPQQDPARPQEPT(0.003)MPPPETPSEGR;MEPAPARS(0.987)PRPQQDPARPQEPT(0.012)MPPPET(0.001)PSEGR;MEPAPARS(1)PRPQQDPARPQEPTMPPPETPSEGR ;; 73.665 3.79E-21 1494950000 0 13809.5 3292.2 64179.1 18136.8 16002.9 17069.6 29202.8 7881.5 0 TRUE FALSE FALSE 0 15424.4009 4510.12178 67685.04172 16331.03651 16840.7871 13422.54051 22040.76751 9463.244757 0 0 (ac)MEPAPARS(ph)PRPQQDPARPQEPTMPPPETPSEGR ddPTM_HeLa_A486_30min_R1 1 MEPAPARSPRPQQDPARPQEPTMPPPETPSEGR 33 3 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 MEPAPARS(0.999)PRPQQDPARPQEPTMPPPETPSEGR 62.302 5.66E-10 681970000 6484.4 6189.2 4405.9 0 5567.1 6544.3 3850.6 8062 0 5848.3 TRUE FALSE FALSE 6029.877045 5698.745251 6111.982474 0 4868.822407 5736.930804 2887.139153 6226.458592 0 4383.847614 1.375475969 1.299941456 1.394205048 0 1.110627658 1.308651967 0.658585655 1.420318209 0 1 12.09798193 (ac)MEQLS(ph)DEEIDHGAEEDS(ph)DKEDQDLDK ddPTM_HeLa_A486_30min_R1 2 MEQLSDEEIDHGAEEDSDKEDQDLDK 26 1 Q70E73;C9K0J5;C9J164;Q70E73-5;Q70E73-2;C9J0R8;C9JLG4;Q70E73-8;Q70E73-7;Q70E73-4;Q70E73-3;Q70E73-9;Q70E73-6 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 2 0 MEQLS(1)DEEIDHGAEEDS(1)DKEDQDLDK;MEQLS(1)DEEIDHGAEEDS(1)DKEDQDLDK ; 148.14 1.60E-90 987790000 747400 742160 296920 932490 479680 1090190 1443130 1165670 599030 2455660 TRUE FALSE FALSE 695011.1196 683348.5387 411895.3758 2170883.845 419514.0616 955693.442 1082043.61 900272.3874 650954.4027 1840746.752 0.3775702 0.371234412 0.223765369 1.179349545 0.227904279 0.519187901 0.587828613 0.489079981 0.353636046 1 20.81185973 -11.15865968 2.390427763 2.226862469 0.487853507 0.265242957 0.258889564 46236584.24 10574750.14 307471665.6 0.06734443 6.94E-12 11.15865968 -1.739008962 (ac)MERPEEGKQS(ph)PPPQPWGR ddPTM_HeLa_A486_30min_R1 1 MERPEEGKQSPPPQPWGR 18 2 F5GWH4;Q96EP1-5;Q96EP1-3;Q96EP1-2;Q96EP1-4;Q96EP1 F5GWH4 CHFR E3 ubiquitin-protein ligase CHFR 1 0 MERPEEGKQS(1)PPPQPWGR 42.612 0.00013413 366220000 205320 210790 156510 93787 253300 204350 256260 246460 159930 247320 TRUE FALSE FALSE 190928.1283 194086.2327 217114.8635 218340.8757 221528.7521 179139.3747 192141.0376 190346.4382 173792.8612 185389.4622 1.029875841 1.046910814 1.171128396 1.177741567 1.194937131 0.966286716 1.036418334 1.026738175 0.937447356 1 17.50019972 -6.272122358 24.99802027 0.997739262 1.125420113 0.571839353 0.056496299 616.3683289 1442290.078 0.02185521 0.019466152 5.34E-07 6.272122358 0.127680851 (ac)MESRDPAQPMS(ph)PGEATQSGARPADR ddPTM_HeLa_A485_30min_R1 1 MESRDPAQPMSPGEATQSGARPADR 25 2 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 MESRDPAQPMS(0.976)PGEAT(0.012)QS(0.012)GARPADR 63.803 0.00025356 741470000 8646.7 8851.5 12881 12603 21272 7399.7 15441 24524 16162 11883 TRUE FALSE FALSE 10570.12858 9886.605927 17646.21792 13291.46998 19154.08499 7787.13685 12141.90421 18509.45055 19405.56515 8920.78679 1.184887481 1.108266138 1.978101073 1.489943689 2.147129557 0.872920409 1.361079969 2.074867496 2.175319914 1 13.12295524 -4.738757152 24.83696849 1.651572421 1.146576204 0.164483351 0.441585662 391.9060956 429128.6965 0.113402295 0.299562149 1.82E-05 4.738757152 -0.504996217 (ac)MESYHKPDQQK ddPTM_HeLa_A485_30min_R1 3 MESYHKPDQQK 11 1 P29401;P29401-2;E9PFF2;F8W888;F8WAX4 P29401 TKT Transketolase 0 0 ;; ;; 90.653 7.97E-07 411222000 331084 384646 328938 235905 522690 406276 550420 587720 375793 457769 FALSE FALSE TRUE 404732.4936 429627.0037 450625.8545 248791.8928 470649.1483 427547.9831 432818.2705 443580.7485 451211.2081 343655.6129 1.177726999 1.250167283 1.311271626 0.723957018 1.369537207 1.244117562 1.259453517 1.290771144 1.312974941 1 18.390604 (ac)MESYHKPDQQK ddPTM_HeLa_A486_30min_R1 1 MESYHKPDQQK 11 1 P29401;P29401-2;E9PFF2;F8W888;F8WAX4 P29401 TKT Transketolase 0 0 45.077 0.00076244 328860000 249180 260840 164480 47824 325720 236850 284760 283830 218540 205050 FALSE FALSE TRUE 231713.7688 240170.0884 228171.0609 111336.6889 284865.1604 207629.8551 213510.0361 219208.105 237483.2232 153704.1453 1.507531031 1.562547893 1.484482155 0.724357099 1.853334272 1.350840959 1.389097448 1.426169115 1.545067133 1 17.22979655 -10.07216681 7.463410234 0.999999951 1.421209125 0.18429332 0.269279544 2.19E-07 2.74E-08 0.254402639 0.061701696 8.47E-11 10.07216681 0.421209174 (ac)MET(ph)PSQRR ddPTM_HeLa_A485_30min_R1 2 METPSQRR 8 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 MET(0.869)PS(0.131)QRR;MET(0.908)PS(0.092)QRR ; 58.246 0.0019216 1233840000 14476 48756 59759 26955 43667 41919 37464 47042 41537 34534 TRUE FALSE FALSE 17696.13626 54457.59008 81866.34088 28427.4834 39319.36016 44113.81402 29459.51035 35504.87574 49873.0949 25925.30935 0.682581489 2.100557002 3.157776818 1.096514723 1.516639961 1.701573294 1.136322423 1.369506348 1.923722268 1 14.66207358 (ac)MET(ph)PSQRR ddPTM_HeLa_A486_30min_R1 2 METPSQRR 8 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 MET(0.893)PS(0.107)QRR;MET(0.897)PS(0.103)QRR ; 78.264 0.00057325 990440000 42568 46075 55465 14096.3 52500 37189 37380 38139 49461 27751 TRUE FALSE FALSE 39584.20302 42423.8492 76942.5334 32816.89879 45914.96046 32600.99929 28027.12863 29455.58227 53748.3193 20801.96897 1.902906551 2.039415079 3.698810123 1.577586181 2.20724108 1.56720738 1.347330566 1.415999721 2.583809224 1 14.34443247 (ac)METMAS(ph)PGKDNYR ddPTM_HeLa_A485_30min_R1 7 METMASPGKDNYR 13 1 S4R3E5;O60684 S4R3E5 KPNA6 Importin subunit alpha-7 1 0 MET(0.005)MAS(0.995)PGKDNYR;METMAS(1)PGKDNYR;METMAS(1)PGKDNYR;MET(0.021)MAS(0.979)PGKDNYR;MET(0.007)MAS(0.993)PGKDNYR;MET(0.013)MAS(0.987)PGKDNYR;MET(0.068)MAS(0.932)PGKDNYR ;;;;;; 110.44 1.57E-41 13007600000 5753320 5742980 4514860 8129980 7958950 6386770 9167030 9135440 5159120 10403530 TRUE FALSE FALSE 7033126.185 6414571.554 6185094.593 8574100.221 7166528.992 6721171.401 7208419.153 6894959.016 6194508.062 7810121.434 0.900514319 0.821315214 0.791933217 1.097819066 0.917595079 0.860571946 0.922958652 0.882823535 0.793138508 1 22.89691355 (ac)METMAS(ph)PGKDNYR ddPTM_HeLa_A486_30min_R1 8 METMASPGKDNYR 13 1 S4R3E5;O60684 S4R3E5 KPNA6 Importin subunit alpha-7 1 0 METMAS(1)PGKDNYR;MET(0.012)MAS(0.988)PGKDNYR;METMAS(1)PGKDNYR;METMAS(1)PGKDNYR;METMAS(1)PGKDNYR;METMAS(1)PGKDNYR;MET(0.024)MAS(0.976)PGKDNYR;MET(0.019)MAS(0.981)PGKDNYR ;;;;;;; 119.88 6.31E-36 11667630000 4095670 4046190 2652190 2036844 4169350 4545280 5682690 5327590 3059480 5802970 TRUE FALSE FALSE 3808584.683 3725555.168 3679188.996 4741875.768 3646391.245 3984529.567 4260820.857 4114614.057 3324678.19 4349868.541 0.875563169 0.856475347 0.845816135 1.090119327 0.838276194 0.916011491 0.979528649 0.945916875 0.764316935 1 22.05254037 (ac)MEVAEPS(ph)S(ph)PTEEEEEEEEHSAEPRPR ddPTM_HeLa_A485_30min_R1 1 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 2 0 MEVAEPS(0.885)S(0.9)PT(0.215)EEEEEEEEHSAEPRPR 99.446 1.93E-09 364910000 0 3402.7 0 3551.3 0 0 0 3975.5 0 0 TRUE FALSE FALSE 0 3800.616165 0 3745.298527 0 0 0 3000.502392 0 0 0 (ac)MEVAEPS(ph)S(ph)PTEEEEEEEEHSAEPRPR ddPTM_HeLa_A486_30min_R1 1 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 2 0 MEVAEPS(0.971)S(0.857)PT(0.172)EEEEEEEEHSAEPRPR 92.822 6.21E-06 296580000 0 0 0 0 0 0 0 0 0 3682.6 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 2760.45299 0 0 0 0 0 0 0 0 0 1 11.43068932 (ac)MEVAEPS(ph)SPTEEEEEEEEHSAEPRPR ddPTM_HeLa_A486_30min_R1 1 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 MEVAEPS(0.333)S(0.333)PT(0.333)EEEEEEEEHSAEPRPR 55.061 0.001017 1406300000 3005.5 3282.3 3313 0 2953.3 3300.9 2845.5 0 0 0 TRUE FALSE FALSE 2794.82997 3022.198594 4595.882325 0 2582.869576 2893.668519 2133.525803 0 0 0 0 (ac)MEVAEPSS(ph)PT(ph)EEEEEEEEHSAEPRPR ddPTM_HeLa_A485_30min_R1 1 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 2 0 MEVAEPS(0.458)S(0.809)PT(0.732)EEEEEEEEHS(0.001)AEPRPR 47.429 0.0031119 420010000 0 2603.4 0 2711.4 0 2779.5 0 0 0 0 TRUE FALSE FALSE 0 2907.844983 0 2859.516916 0 2925.030322 0 0 0 0 0 (ac)MEVAEPSS(ph)PTEEEEEEEEHSAEPRPR ddPTM_HeLa_A485_30min_R1 6 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 MEVAEPS(0.173)S(0.798)PT(0.03)EEEEEEEEHSAEPRPR;MEVAEPS(0.061)S(0.756)PT(0.183)EEEEEEEEHSAEPRPR;MEVAEPS(0.231)S(0.657)PT(0.112)EEEEEEEEHSAEPRPR;MEVAEPS(0.032)S(0.827)PT(0.14)EEEEEEEEHS(0.001)AEPRPR;MEVAEPS(0.161)S(0.678)PT(0.161)EEEEEEEEHSAEPRPR;MEVAEPS(0.008)S(0.847)PT(0.146)EEEEEEEEHSAEPRPR ;;;;; 129.48 2.17E-20 22417600000 0 0 0 0 5967.4 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 5373.264703 0 0 0 0 0 0 (ac)MEVAEPSS(ph)PTEEEEEEEEHSAEPRPR ddPTM_HeLa_A486_30min_R1 5 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 MEVAEPS(0.162)S(0.712)PT(0.126)EEEEEEEEHSAEPRPR;MEVAEPS(0.078)S(0.728)PT(0.191)EEEEEEEEHS(0.003)AEPRPR;MEVAEPS(0.045)S(0.759)PT(0.196)EEEEEEEEHSAEPRPR;MEVAEPS(0.132)S(0.75)PT(0.118)EEEEEEEEHSAEPRPR;MEVAEPS(0.008)S(0.837)PT(0.155)EEEEEEEEHSAEPRPR ;;;; 142.22 1.27E-28 18580600000 11508 22240 87512 0 53819 13554 14519.7 25583.9 29064 14541.5 TRUE FALSE FALSE 10701.34863 20477.6214 121398.9901 0 47068.51918 11881.84529 10886.71749 19759.00446 31583.29092 10900.21375 0.981755851 1.878644022 11.13730362 0 4.318128089 1.090056173 0.998761835 1.812717155 2.897492806 1 13.41206881 (ac)MEVKPPPGRPQPDS(ph)GR ddPTM_HeLa_A485_30min_R1 9 MEVKPPPGRPQPDSGR 16 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR ;;;;;;;; 92.098 3.82E-12 12241580000 3537012 3670350 3493713 4783500 4717110 3737467 4755170 4501020 3859623 5872230 TRUE FALSE FALSE 4323808.117 4099565.505 4786182.824 5044810.493 4247457.966 3933154.993 3739189.083 3397137.788 4634213.934 4408391.131 0.980813178 0.929945956 1.085698315 1.144365448 0.9634939 0.892197374 0.848198123 0.770607164 1.051225673 1 22.0718208 -5.998728666 24.96670656 0.897843409 1.034123278 0.285506065 0.09008656 51.33996241 1008183.411 0.028929202 0.032551118 1.00E-06 5.998728666 0.136279869 (ac)MEVKPPPGRPQPDS(ph)GR ddPTM_HeLa_A486_30min_R1 12 MEVKPPPGRPQPDSGR 16 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR ;;;;;;;;;;; 101.64 6.59E-06 16019850000 3854865 4675660 3300044 1694728 4653220 4315780 4954620 5043900 3671246 4884260 TRUE FALSE FALSE 3584658.87 4305143.673 4577909.415 3945412.431 4069569.758 3783342.943 3714921.671 3895514.078 3989472.559 3661209.505 0.979091436 1.175880175 1.250381714 1.07762542 1.111536981 1.033358768 1.014670607 1.063996494 1.08965973 1 21.8038889 -5.985417926 2.039060178 1.043223792 1.13606315 0.232449034 0.069315506 0.472305084 3.96235883 0.025922245 0.028711418 1.03E-06 5.985417926 0.092839358 (ac)MEVKPPPGRPQPDS(ph)GRR ddPTM_HeLa_A485_30min_R1 1 MEVKPPPGRPQPDSGRR 17 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 MEVKPPPGRPQPDS(1)GRR 50.916 0.0016008 3064500000 69631 80566 71032 85837 109450 84983 101090 116170 79269 109550 TRUE FALSE FALSE 85120.17573 89987.49287 97309.69269 90526.05796 98552.7737 89432.57847 79491.29567 87679.12535 95177.5612 82241.20112 1.035006476 1.094189915 1.183223146 1.100738519 1.19833821 1.087442514 0.966562922 1.066121654 1.157297801 1 16.32757371 -6.52318783 24.99999422 1.049291014 1.124921058 0.238194808 0.062948645 16.69814529 1350358.014 0.024297163 0.019009506 3.00E-07 6.52318783 0.075630045 (ac)MEVS(ph)PLQPVNENMQVNK ddPTM_HeLa_A486_30min_R1 1 MEVSPLQPVNENMQVNK 17 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 MEVS(1)PLQPVNENMQVNK 42.809 0.0007259 0 43961 59479 39813 18085 53038 56736 60973 65198 57213 63517 TRUE FALSE FALSE 40879.56091 54765.66742 55229.65983 42102.79397 46385.47948 49736.48917 45716.91049 50353.83866 62172.26891 47611.92977 0.858599118 1.150250949 1.159996247 0.884290852 0.974240693 1.044622417 0.960198646 1.057588695 1.305812833 1 15.53903548 -7.537279334 24.94307527 1.162504621 1.011706607 0.203837436 0.115302316 356.2495687 617042.5291 0.07575996 0.028660125 2.90E-08 7.537279334 -0.150798013 (ac)MFCVT(ph)PPELETK ddPTM_HeLa_A485_30min_R1 1 MFCVTPPELETK 12 0 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;C9JDU5;C9JJS3;I3L1T1;I3L275;E7EW35;I3L164;I3L331;I3L2J4;I3L3B8;C9JDH0 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 MFCVT(1)PPELETK 62.303 0.0090019 8475800 13419 16827 15270 19121 22701 16296 22524 21137 17462 23926 TRUE FALSE FALSE 16404.01025 18794.77127 20919.00844 20165.53181 20440.80873 17149.23336 17711.5634 15953.11761 20966.46323 17961.68853 0.913277737 1.046381093 1.164645986 1.122696888 1.13802267 0.954767328 0.98607452 0.888174716 1.167287986 1 14.13263536 -6.268747268 24.60948117 0.99144768 1.08271095 0.147791377 0.091886707 826.9075852 2784622.57 0.032579109 0.029337649 5.39E-07 6.268747268 0.091263269 (ac)MFPFGPHS(ph)PGGDGSAGAGAEEPTPHEGQAAATGPPS(ph)PLHPGADATHPPPPAR ddPTM_HeLa_A486_30min_R1 1 MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPAR 52 0 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 2 0 MFPFGPHS(0.993)PGGDGS(0.006)AGAGAEEPT(0.005)PHEGQAAAT(0.258)GPPS(0.724)PLHPGADAT(0.014)HPPPPAR 71.562 8.31E-12 190880000 8859.4 7987.6 4995.1 3698.3 10258 10311 9612.6 10254 9422.7 11206 TRUE FALSE FALSE 8238.40181 7354.633486 6929.336493 8609.829302 8971.345988 9038.933655 7207.425808 7919.388043 10239.46722 8399.944661 0.980768581 0.875557374 0.824926446 1.024986431 1.068024416 1.076070619 0.858032535 0.942790502 1.218992224 1 13.03616411 -5.281117782 23.63143971 1.02131703 0.891931464 0.291118722 0.094974187 525.7675279 631383.6548 0.027617126 0.041043003 5.23E-06 5.281117782 -0.129385566 (ac)MFPFGPHS(ph)PGGDGSAGAGAEEPTPHEGQAAATGPPS(ph)PLHPGADATHPPPPARS(ph)PR ddPTM_HeLa_A485_30min_R1 1 MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPR 55 1 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 3 0 MFPFGPHS(0.612)PGGDGS(0.386)AGAGAEEPT(0.002)PHEGQAAAT(0.006)GPPS(0.97)PLHPGADAT(0.059)HPPPPARS(0.965)PR 51.762 1.70E-10 213110000 9044.3 11568 12036 14107 10927 15836 14563 5533.9 4835 20302 TRUE FALSE FALSE 11056.17333 12920.77697 16488.61726 14877.62969 9839.069513 16665.14847 11451.49608 4176.702348 5805.340151 15241.08503 0.725419044 0.847759654 1.081853243 0.976152922 0.645562274 1.093435831 0.75135701 0.274042323 0.380900713 1 13.89567799 -7.010678479 22.60017787 0.49902265 0.896111294 0.317970919 0.22127799 141.4591768 299385.8371 0.094766905 0.05922553 9.76E-08 7.010678479 0.397088645 (ac)MFPFGPHS(ph)PGGDGSAGAGAEEPTPHEGQAAATGPPS(ph)PLHPGADATHPPPPARS(ph)PR ddPTM_HeLa_A486_30min_R1 1 MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPR 55 1 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 3 0 MFPFGPHS(0.967)PGGDGS(0.033)AGAGAEEPTPHEGQAAAT(0.021)GPPS(0.978)PLHPGADAT(0.048)HPPPPARS(0.952)PR 87.126 7.03E-20 253470000 0 3511 0 0 0 0 5397.1 5823.1 4982.4 5108.6 TRUE FALSE FALSE 0 3232.775573 0 0 0 0 4046.688495 4497.307247 5414.278444 3829.373309 0 0.844204864 0 0 0 0 1.056749543 1.174423825 1.413881073 1 11.90289259 -6.818239883 5.552578351 1.193841339 0.153471401 0.78372054 0.262852136 0.095200863 6.008958029 0.116281854 0.078714222 1.52E-07 6.818239883 -1.040369938 (ac)MHRDS(ph)CPLDCK ddPTM_HeLa_A485_30min_R1 2 MHRDSCPLDCK 11 1 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 0 MHRDS(1)CPLDCK;MHRDS(1)CPLDCK ; 67.234 1.18E-05 945570000 685660 583270 683290 1022260 1056050 638870 956630 840330 691690 1292180 TRUE FALSE FALSE 838182.7015 651478.3527 936067.4051 1078103.475 950905.954 672320.2453 752238.1856 634237.7499 830505.8384 970063.3068 0.864049486 0.671583337 0.964954966 1.111374348 0.980251441 0.693068422 0.775452674 0.65381068 0.856135711 1 19.88771938 -6.257225035 24.95820083 0.772791613 0.918030744 0.15840326 0.136453135 617.5007544 3656970.038 0.048601483 0.046957154 5.53E-07 6.257225035 0.145239131 (ac)MNLLPNIES(ph)PVTR ddPTM_HeLa_A485_30min_R1 2 MNLLPNIESPVTR 13 0 E9PM69;P17980 E9PM69 PSMC3 26S protease regulatory subunit 6A 1 0 MNLLPNIES(0.945)PVT(0.055)R;MNLLPNIES(0.969)PVT(0.031)R ; 56.359 0.00030341 93859000 3659 6342.3 6108.9 2340 4305.4 2895 6397.1 6777 5035.6 7336.8 TRUE FALSE FALSE 4472.931927 7083.976814 8368.836323 2467.828275 3876.739259 3046.577723 5030.307325 5114.930124 6046.198731 5507.870784 0.812098196 1.28615523 1.519432218 0.44805486 0.703854431 0.553131663 0.913294361 0.928658337 1.09773794 1 12.427279 -5.258170547 24.99992933 0.793047235 1.213921199 0.352482707 0.247601861 319.0476026 2440054.542 0.07090211 0.116590992 5.52E-06 5.258170547 0.420873963 (ac)MNLLPNIES(ph)PVTR ddPTM_HeLa_A486_30min_R1 3 MNLLPNIESPVTR 13 0 E9PM69;P17980 E9PM69 PSMC3 26S protease regulatory subunit 6A 1 0 MNLLPNIES(0.963)PVT(0.037)R;MNLLPNIES(0.965)PVT(0.035)R;MNLLPNIES(0.97)PVT(0.03)R ;; 64.82 3.88E-05 228240000 9147.3 9789.6 6645.66 4202.67 11054.6 11341.8 10111.1 12430.5 6759.3 10772.8 TRUE FALSE FALSE 8506.121507 9013.836443 9219.037529 9784.028151 9668.028988 9942.564031 7581.195836 9600.346506 7345.201566 8075.220761 1.053360863 1.116234058 1.141645263 1.211611229 1.1972464 1.231243619 0.938822115 1.188864898 0.909597618 1 12.97928599 -6.757554778 24.99992181 1.0250599 1.160034599 0.424923467 0.084249717 107.503806 691862.7589 0.032647126 0.02431459 1.75E-07 6.757554778 0.134974699 (ac)MNTAPS(ph)RPSPTRR ddPTM_HeLa_A485_30min_R1 2 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNT(0.006)APS(0.391)RPS(0.301)PT(0.301)RR;MNTAPS(0.417)RPS(0.326)PT(0.257)RR ; 51.147 0.0082019 5999800000 88880 149213 181600 93392 135178 167060 130137 193636 144700 109570 TRUE FALSE FALSE 108651.0494 166662.1624 248781.397 98493.76848 121719.2037 175807.0033 102332.1668 146146.4674 173739.9627 82256.21549 1.320885586 2.026134577 3.024469282 1.19740214 1.479756915 2.137309652 1.244066071 1.776722483 2.112180359 1 16.32783708 (ac)MNTAPS(ph)RPSPTRRDPYGFGDSR ddPTM_HeLa_A485_30min_R1 2 MNTAPSRPSPTRRDPYGFGDSR 22 3 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNT(0.001)APS(0.496)RPS(0.406)PT(0.079)RRDPY(0.015)GFGDS(0.004)R;MNT(0.001)APS(0.414)RPS(0.414)PT(0.161)RRDPY(0.006)GFGDS(0.003)R ; 49.528 6.40E-10 1373500000 32352 28912 13813.4 37542 40316 21351.8 31836 52977 16898.4 41263 TRUE FALSE FALSE 39548.59079 32293.0069 18923.55148 39592.8244 36301.99748 22469.74723 25033.97852 39984.30769 20289.75388 30976.89349 1.276712618 1.04248694 0.610892486 1.278140573 1.171905682 0.725371227 0.808150066 1.290778486 0.654996405 1 14.91890485 -6.243670068 24.87263267 0.908551045 1.059551928 0.12142349 0.239068098 2156.017659 3017892.371 0.080300886 0.080130916 5.71E-07 6.243670068 0.151000883 (ac)MNTAPSRPS(ph)PTR ddPTM_HeLa_A485_30min_R1 6 MNTAPSRPSPTR 12 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNTAPS(0.015)RPS(0.9)PT(0.085)R;MNTAPS(0.02)RPS(0.799)PT(0.181)R;MNTAPS(0.116)RPS(0.883)PT(0.001)R;MNTAPS(0.015)RPS(0.949)PT(0.036)R;MNTAPS(0.028)RPS(0.963)PT(0.009)R;MNTAPS(0.111)RPS(0.814)PT(0.075)R ;;;;; 96.371 1.24E-10 28473260000 280879 420960 338283 304581 452043 447589 461953 546429 361874 382595 TRUE FALSE FALSE 343359.5645 470187.6101 463427.9588 321219.4888 407036.0117 471024.0679 363252.9677 412416.431 434498.7925 287221.1076 1.1954538 1.637023177 1.613488516 1.118370065 1.417152155 1.639935421 1.264715434 1.435884829 1.512767624 1 18.13180225 -10.41748565 4.670593218 0.999181337 1.430321843 0.347047548 0.175247656 0.001480359 0.000184629 0.168140812 0.040705902 3.82E-11 10.41748565 0.431140506 (ac)MNTAPSRPS(ph)PTR ddPTM_HeLa_A486_30min_R1 8 MNTAPSRPSPTR 12 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNTAPS(0.004)RPS(0.97)PT(0.026)R;MNTAPS(0.006)RPS(0.849)PT(0.144)R;MNTAPS(0.032)RPS(0.89)PT(0.078)R;MNTAPS(0.023)RPS(0.779)PT(0.198)R;MNT(0.001)APS(0.344)RPS(0.636)PT(0.019)R;MNTAPS(0.064)RPS(0.89)PT(0.046)R;MNTAPS(0.05)RPS(0.822)PT(0.128)R;MNT(0.001)APS(0.046)RPS(0.484)PT(0.47)R ;;;;;;; 77.279 8.88E-11 33744730000 841984.4 862666.5 719346 172408.6 1034402 806681.7 816800.3 936828.4 705210.5 634260.6 TRUE FALSE FALSE 782965.6416 794305.6648 997896.036 401375.9338 904657.6557 707161.5136 612428.2257 723533.0241 766338.7139 475437.6174 1.646831494 1.670683252 2.098900044 0.844224182 1.902789394 1.487390748 1.288135821 1.521825362 1.611859655 1 18.85889653 -12.00727727 0.127031068 3.31E-12 1.838322809 0.236884355 0.316076189 121.0147078 1.627080192 37.23219748 2.890521373 9.83E-13 12.00727727 1.838322809 (ac)MNTAPSRPS(ph)PTRR ddPTM_HeLa_A485_30min_R1 2 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNT(0.001)APS(0.113)RPS(0.443)PT(0.443)RR;MNTAPS(0.1)RPS(0.45)PT(0.45)RR ; 66.246 0.0012415 15030700000 43139 68974 79369 45733 88783 73116 72484 60821 66302 56241 TRUE FALSE FALSE 52735.12172 77039.90931 108730.8959 48231.27799 79943.45278 76944.2407 56997.20126 45904.55439 79608.20324 42221.15374 1.249021333 1.824675607 2.5752706 1.14234865 1.893445482 1.822409714 1.349967877 1.087240644 1.88550516 1 15.36567838 -6.766805769 23.97335071 1.337948264 1.770784323 0.188857764 0.425676849 136.8588877 611378.5976 0.172223158 0.120082627 1.71E-07 6.766805769 0.432836059 (ac)MNTAPSRPS(ph)PTRR ddPTM_HeLa_A486_30min_R1 2 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNTAPS(0.035)RPS(0.483)PT(0.483)RR;MNTAPS(0.016)RPS(0.492)PT(0.492)RR ; 76.391 0.00015947 3496700000 137676 125104 142639 38372 161564 147856 122215 128409 114909 88977 TRUE FALSE FALSE 128025.6234 115190.3034 197872.6408 89331.95521 141299.1366 129615.03 91635.51434 99173.07385 124869.4046 66696.58006 1.919523059 1.727079609 2.966758425 1.339378348 2.11853646 1.943353466 1.373916238 1.486928921 1.872201011 1 16.02532517 -7.951425816 0.275431878 0.865439014 2.191354363 0.331697364 0.419522427 2.638722297 0.658206151 1.28227861 0.796880284 1.12E-08 7.951425816 1.325915348 (ac)MNTAPSRPS(ph)PTRRDPYGFGDSR ddPTM_HeLa_A485_30min_R1 1 MNTAPSRPSPTRRDPYGFGDSR 22 3 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNTAPS(0.05)RPS(0.774)PT(0.155)RRDPY(0.013)GFGDS(0.007)R 59.691 3.18E-10 940170000 17047 11549 0 10993 17741 16336 14859 24820 8838.9 16149 TRUE FALSE FALSE 20839.04634 12899.55509 0 11593.51975 15974.64375 17191.3277 11684.25326 18732.85608 10612.78615 12123.3515 1.718917936 1.064025495 0 0.956296595 1.317675541 1.418034254 0.963780788 1.545187903 0.875400351 1 13.56550097 -5.637523489 6.276829471 1.212578786 0.868216314 0.067059643 0.436122562 0.496182501 25.38553337 0.133829856 0.173142071 2.30E-06 5.637523489 -0.344362473 (ac)MNTAPSRPSPT(ph)RR ddPTM_HeLa_A486_30min_R1 2 MNTAPSRPSPTRR 13 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNTAPS(0.017)RPS(0.419)PT(0.564)RR;MNTAPS(0.078)RPS(0.388)PT(0.533)RR ; 60.209 0.00053565 13893700000 31919 48433 55998 28221 63398 43639 55238 38389 41478 46484 TRUE FALSE FALSE 29681.64293 44594.99269 77681.92528 65699.91421 55446.03168 38255.26387 41416.86815 29648.66273 45073.34644 34844.10384 0.851841191 1.279843296 2.229413781 1.885538928 1.591260086 1.097897769 1.188633473 0.850894684 1.293571694 1 15.08862693 -6.261908445 6.040084344 1.081459798 1.607540904 0.312335954 0.35479185 0.202427859 34.12913893 0.132891951 0.124550578 5.47E-07 6.261908445 0.526081107 (ac)MNYEGS(ph)PIKVTLATLK ddPTM_HeLa_A485_30min_R1 1 MNYEGSPIKVTLATLK 16 1 E5RI98 E5RI98 NPM1 1 0 MNY(0.461)EGS(0.536)PIKVT(0.003)LATLK 45.915 0.0056635 0 13859 18861 13358 21684 26824 16371 32219 26830 19243 31868 TRUE FALSE FALSE 16941.88674 21066.62988 18299.68007 22868.54201 24153.30838 17228.16025 25335.14744 20249.90043 23104.89359 23923.89409 0.708157571 0.880568598 0.764912267 0.955887111 1.009589337 0.72012358 1.058989283 0.846429948 0.965766422 1 14.54616462 -2.884660885 0.499898495 0.937175219 7.37E-12 0.319986494 0.099157583 20.44890195 1.344481865 0.054113834 15.1621775 0.001304185 2.884660885 -0.937175219 (ac)MNYEGS(ph)PIKVTLATLK ddPTM_HeLa_A486_30min_R1 1 MNYEGSPIKVTLATLK 16 1 E5RI98 E5RI98 NPM1 1 0 MNY(0.455)EGS(0.538)PIKVT(0.007)LATLK 54.7 4.74E-06 0 44062 48238 32829 28600 55199 57367 80011 74045 47393 63647 TRUE FALSE FALSE 40973.48134 44415.4452 45541.26799 66582.24536 48275.42671 50289.6428 59991.40153 57186.56989 51501.0634 47709.37693 0.85881401 0.9309584 0.954555916 1.395579856 1.011864539 1.054082993 1.257434186 1.198644241 1.079474659 1 15.54198522 -5.02509023 24.28583691 1.148592453 0.906853846 0.454682932 0.115207154 424.4410268 410834.1695 0.030603642 0.053343097 9.44E-06 5.02509023 -0.241738607 (ac)MS(ph)GDEMIFDPTMSK ddPTM_HeLa_A485_30min_R1 3 MSGDEMIFDPTMSK 14 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 MS(0.999)GDEMIFDPT(0.001)MSK;MS(1)GDEMIFDPTMSK;MS(1)GDEMIFDPTMSK ;; 69.349 0.00012794 26623000 124656 131710 118415 132210 172852 130731 179413 176591 120069 181364 TRUE FALSE FALSE 152385.2971 147112.3388 162221.6362 139432.2975 155642.248 137575.873 141079.9469 133281.7804 144165.747 136153.2926 1.119218598 1.080490497 1.191463189 1.024083185 1.143139802 1.010448374 1.036184614 0.978909712 1.058848774 1 17.05487235 -6.272128283 24.65666422 1.01676679 1.109512371 0.529000975 0.04470293 476.2798747 1098656.246 0.014761608 0.013157205 5.34E-07 6.272128283 0.092745581 (ac)MS(ph)GDEMIFDPTMSK ddPTM_HeLa_A486_30min_R1 3 MSGDEMIFDPTMSK 14 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 MS(1)GDEMIFDPTMSK;MS(1)GDEMIFDPTMSK;MS(1)GDEMIFDPTMSK ;; 56.094 9.70E-06 34297600 132305 152861 120409 63732 175314 160646 194563 174790 125904 168812 TRUE FALSE FALSE 123031.1027 140747.7376 167034.5895 148371.3168 153324.4834 140827.1298 145881.2795 134994.1326 136817.4601 126540.3764 0.972267558 1.11227532 1.320010215 1.172521538 1.211664512 1.112902726 1.15284373 1.066806789 1.081215846 1 16.94923827 -7.630199621 0.987132179 1.007815399 1.16215177 0.247571977 0.083611825 0.736607302 1.413582389 0.082157741 0.029471388 2.34E-08 7.630199621 0.154336371 (ac)MS(ph)PTPPLFSLPEAR ddPTM_HeLa_A486_30min_R1 2 MSPTPPLFSLPEAR 14 0 A0A087WWS1;Q96FV9;J3KRD7;J3QQZ3;J3KT14;Q96FV9-2 A0A087WWS1 THOC1 THO complex subunit 1 1 0 MS(0.82)PT(0.178)PPLFS(0.002)LPEAR;MS(0.848)PT(0.152)PPLFS(0.001)LPEAR ; 54.776 2.03E-05 23190000 8915.7 8368.2 8493 1509.7 7223.15 7837.3 7068.2 6502.7 6271.8 4312.7 TRUE FALSE FALSE 8290.755471 7705.073356 11781.71705 3514.657896 6317.155174 6870.41361 5299.6616 5022.177163 6815.444674 3232.771849 2.564596531 2.383426272 3.644462895 1.087196394 1.954098671 2.125239247 1.63935528 1.553520445 2.108235592 1 11.65855598 -1 0.122607176 0.77456245 7.346704818 0.381850736 0.575708023 97.77616445 0.822510393 3.751459692 110.0869929 0.1 1 6.572142368 (ac)MT(ph)TS(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_HeLa_A485_30min_R1 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 32 3 O75531 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 2 0 MT(0.553)T(0.518)S(0.929)QKHRDFVAEPMGEKPVGSLAGIGEVLGK 62.27 1.19E-06 554990000 73951 87306 47688 92122 169300 177110 289060 430340 94394 162390 TRUE FALSE FALSE 90401.14482 97515.67724 65329.77566 97154.39159 152443.8976 186383.2057 227299.9696 324798.4403 113338.01 121909.1616 0.741545128 0.799904421 0.535888975 0.796940856 1.250471216 1.528869556 1.864502771 2.664266049 0.92969231 1 16.89544702 -6.012297383 1.8541784 1.736762691 0.693789717 0.435979864 0.461852015 0.286595819 1.985528911 0.170744645 0.186308114 9.72E-07 6.012297383 -1.042972974 (ac)MTTS(ph)QKHR ddPTM_HeLa_A486_30min_R1 3 MTTSQKHR 8 1 O75531;E9PJJ8 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 1 0 MT(0.001)T(0.07)S(0.929)QKHR;MT(0.001)T(0.198)S(0.801)QKHR;MTT(0.018)S(0.982)QKHR ;; 96.015 0.00073887 599135000 575937 774569 1192019 244820 1812110 629710 884801 1132289 752774 421912 TRUE FALSE FALSE 535566.7904 713189.3315 1653600.68 569953.3325 1584818.267 552022.7826 663414.4313 874491.5124 818025.0564 316262.489 1.693424953 2.255055077 5.228570373 1.802152808 5.011085164 1.745457656 2.097670304 2.765081357 2.58653835 1 18.27076293 -8.712500966 0.460881533 0.84570729 3.043478626 0.173698767 1.215043126 4.919313829 1.666136267 2.905060212 0.702091486 1.94E-09 8.712500966 2.197771336 (ac)MVDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_HeLa_A485_30min_R1 9 MVDYSVWDHIEVSDDEDETHPNIDTASLFR 30 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 0 MVDYSVWDHIEVS(0.994)DDEDET(0.006)HPNIDTASLFR;MVDY(0.003)S(0.003)VWDHIEVS(0.968)DDEDET(0.025)HPNIDTASLFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDYS(0.001)VWDHIEVS(0.998)DDEDETHPNIDTASLFR;MVDY(0.001)S(0.036)VWDHIEVS(0.952)DDEDET(0.011)HPNIDTASLFR;MVDYSVWDHIEVS(0.999)DDEDET(0.001)HPNIDTASLFR;MVDYSVWDHIEVS(0.996)DDEDET(0.004)HPNIDTASLFR;MVDY(0.006)S(0.006)VWDHIEVS(0.986)DDEDET(0.001)HPNIDTASLFR;MVDY(0.007)S(0.007)VWDHIEVS(0.984)DDEDET(0.001)HPNIDTASLFR ;;;;;;;; 121.15 2.12E-29 502085000 14498.41 18214.72 20747.95 21279.31 31225.6 19375.7 28111.19 27135.9 24135.3 28445.8 TRUE FALSE FALSE 17723.53129 20344.77306 28423.4801 22441.74482 28116.66962 20390.18169 22105.00461 20480.77798 28979.03333 21354.78557 0.829955947 0.952703224 1.331012199 1.050900031 1.316644906 0.954829616 1.035131191 0.95907205 1.357027596 1 14.38227179 -4.533488242 24.56510278 1.120471566 0.860642673 0.299917898 0.148268474 170.3987769 394539.5933 0.036613458 0.097094111 2.93E-05 4.533488242 -0.259828893 (ac)MVDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_HeLa_A486_30min_R1 6 MVDYSVWDHIEVSDDEDETHPNIDTASLFR 30 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 0 MVDY(0.004)S(0.004)VWDHIEVS(0.99)DDEDET(0.002)HPNIDTASLFR;MVDYSVWDHIEVS(0.998)DDEDET(0.002)HPNIDTASLFR;MVDY(0.01)S(0.041)VWDHIEVS(0.906)DDEDET(0.041)HPNIDT(0.001)AS(0.001)LFR;MVDYS(0.001)VWDHIEVS(0.973)DDEDET(0.024)HPNIDT(0.001)AS(0.001)LFR;MVDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;MVDY(0.006)S(0.009)VWDHIEVS(0.965)DDEDET(0.019)HPNIDTASLFR ;;;;; 114.2 2.41E-21 410520000 14930.4 16440.3 17973.86 4738.19 27283.6 12788.7 17095.4 16206.4 16909.6 10688.3 TRUE FALSE FALSE 13883.85606 15137.51075 24933.81995 11030.74577 23861.43648 11210.96022 12817.9501 12516.5565 18375.33774 8011.880111 1.732908614 1.889383084 3.112105973 1.376798657 2.978256807 1.399292059 1.599867937 1.562249601 2.293511322 1 12.96792512 -6.32622883 24.99966682 1.607929763 2.20260328 0.238506733 0.575742289 326.9447695 126153.6886 0.193626219 0.170762297 4.72E-07 6.32622883 0.594673517 (ac)MVDYSVWDHIEVSDDEDET(ph)HPNIDTASLFR ddPTM_HeLa_A486_30min_R1 1 MVDYSVWDHIEVSDDEDETHPNIDTASLFR 30 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 0 MVDYS(0.001)VWDHIEVS(0.469)DDEDET(0.524)HPNIDT(0.004)AS(0.004)LFR 52.586 0.0020092 86875000 0 778.92 0 753.65 1002.7 1297.6 1453 0 0 817.59 TRUE FALSE FALSE 0 717.1955424 0 1754.535287 876.9320162 1137.515305 1089.444032 0 0 612.8601424 0 1.170243409 0 2.862864079 1.430884398 1.856076495 1.777638904 0 0 1 9.259414071 (ac)MYSS(ph)PLCLTQDEFHPFIEALLPHVR ddPTM_HeLa_A485_30min_R1 1 MYSSPLCLTQDEFHPFIEALLPHVR 25 0 P08651-5;P08651-6;P08651 P08651-5 NFIC Nuclear factor 1 C-type 1 0 MY(0.002)S(0.164)S(0.834)PLCLTQDEFHPFIEALLPHVR 124.79 1.84E-13 187030000 0 0 0 0 0 0 0 10215 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 7709.755234 0 0 0 (ac)PDPAK(ac)SAPAPK ddPTM_HeLa_A486_30min_R1 2 PDPAKSAPAPK 11 1 Q5QNW6;Q5QNW6-2;P23527 Q5QNW6;P23527 HIST2H2BF;HIST1H2BO Histone H2B type 2-F;Histone H2B type 1-O 0 1 ; PDPAK(1)SAPAPK;PDPAK(1)SAPAPK 63.816 2.21E-09 203549000 658840 483660 388140 62829 608620 519870 707500 707190 583550 797300 FALSE TRUE FALSE 612658.7183 445333.0201 538438.2027 146269.0872 532281.2044 455733.7251 530476.0168 546178.2748 634132.5839 597650.8904 1.025111362 0.745139056 0.900924288 0.244740014 0.89062229 0.762541698 0.887601818 0.913875113 1.061041812 1 19.18894347 -7.105661265 1.367223816 1.019900372 0.744150221 0.225834252 0.195155299 0.689375492 2.384448678 0.1509262 0.064933736 7.84E-08 7.105661265 -0.275750151 (ac)S(ph)AADEVDGLGVARPHYGSVLDNER ddPTM_HeLa_A485_30min_R1 2 SAADEVDGLGVARPHYGSVLDNER 24 1 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 0 S(1)AADEVDGLGVARPHYGSVLDNER;S(1)AADEVDGLGVARPHYGSVLDNER ; 125.62 1.75E-49 710750000 6893.3 8603.1 8788 4508.1 16403.7 5730.1 6531.9 14448.2 0 5602.7 TRUE FALSE FALSE 8426.690803 9609.157708 12039.0469 4754.366088 14770.49003 6030.119176 5136.306204 10904.7563 0 4206.05 2.003469004 2.284603775 2.862316639 1.130363664 3.511724785 1.433677483 1.221170981 2.592635916 0 1 12.03825029 -7.325185096 0.863065477 0.763777779 2.281427836 0.305653025 0.823236707 0.747574164 1.023854801 0.717854392 0.30128975 4.73E-08 7.325185096 1.517650056 (ac)S(ph)AADEVDGLGVARPHYGSVLDNER ddPTM_HeLa_A486_30min_R1 3 SAADEVDGLGVARPHYGSVLDNER 24 1 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 0 S(1)AADEVDGLGVARPHYGSVLDNER;S(1)AADEVDGLGVARPHYGSVLDNER;S(1)AADEVDGLGVARPHYGSVLDNER ;; 142.41 2.17E-89 994130000 28194.3 23563 25436.8 10133 34219.9 18627 20912.8 25236 27383.2 35736.7 TRUE FALSE FALSE 26218.02517 21695.78207 35286.61018 23590.13609 29927.72105 16328.99013 15680.19625 19490.3137 29756.79782 26787.99771 0.978722839 0.809906821 1.317254487 0.880623343 1.117206346 0.609563667 0.585344094 0.727576354 1.110825756 1 14.70929913 -6.251592661 24.98731444 0.775803126 1.017718121 0.218824923 0.197954932 978.8564782 2483975.18 0.066079423 0.065319709 5.60E-07 6.251592661 0.241914995 (ac)S(ph)AIQNLHSFDPFADASKGDDLLPAGTEDYIHIR ddPTM_HeLa_A485_30min_R1 1 SAIQNLHSFDPFADASKGDDLLPAGTEDYIHIR 33 1 K7EM18;P41567 K7EM18 EIF1 Eukaryotic translation initiation factor 1 1 0 S(0.841)AIQNLHS(0.135)FDPFADAS(0.023)KGDDLLPAGT(0.001)EDYIHIR 48.947 0.0010577 17150000 6930.6 6437.5 7785.7 9953.2 7579.1 6846.6 11740 10977 5501.7 11234 TRUE FALSE FALSE 8472.28806 7190.309626 10665.95442 10496.91811 6824.498192 7205.077389 9231.653093 8284.873539 6605.840725 8433.570546 1.00459088 0.852581903 1.264702105 1.244658838 0.809206273 0.854332972 1.094631632 0.98236844 0.78327924 1 13.04192784 -5.770625361 24.99999097 0.925139455 1.086920384 0.264688213 0.139415125 313.3227302 852716.9449 0.046401988 0.053353498 1.70E-06 5.770625361 0.161780929 (ac)S(ph)APLDAALHALQEEQAR ddPTM_HeLa_A486_30min_R1 1 SAPLDAALHALQEEQAR 17 0 P80217;P80217-2 P80217 IFI35 Interferon-induced 35 kDa protein 1 0 S(1)APLDAALHALQEEQAR 46.481 0.0011164 11321000 2618.1 3523.6 2731.6 2368.9 3154.5 2317.8 2476.5 3086.8 2251.8 3889.1 TRUE FALSE FALSE 2434.58471 3244.377103 3789.348675 5514.918918 2758.833195 2031.853402 1856.853506 2384.003024 2446.987837 2915.244046 0.835122093 1.112900688 1.299839264 1.891752056 0.946347253 0.696975406 0.636946162 0.817771338 0.839376669 1 11.50940095 -5.987120272 24.99999388 0.781735971 1.291855153 0.43719904 0.260955639 220.2262145 427464.1118 0.085370509 0.096746644 1.03E-06 5.987120272 0.510119182 (ac)S(ph)DAAVDTSSEITTK ddPTM_HeLa_A485_30min_R1 2 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 0 S(0.999)DAAVDT(0.001)S(0.001)SEITTK;S(0.756)DAAVDT(0.102)S(0.132)S(0.011)EITTK ; 75.819 1.93E-49 2689900000 1815820 1806390 1786210 2047550 2488500 2009080 2850500 2790000 1916370 2636700 TRUE FALSE FALSE 2219742.894 2017631.597 2447003.409 2159402.472 2240736.202 2114272.322 2241467.389 2105748.125 2300967.881 1979419.215 1.121411209 1.019304846 1.236222924 1.090927306 1.132017001 1.068127614 1.132386395 1.0638212 1.162445966 1 20.91664576 -10.79290942 2.628394358 0.967914034 1.112435314 0.266614651 0.056699979 11770728.87 7967193.277 2407609.782 0.01340019 1.61E-11 10.79290942 0.144521279 (ac)S(ph)DAAVDTSSEITTK ddPTM_HeLa_A486_30min_R1 4 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 0 S(0.994)DAAVDT(0.003)S(0.003)SEITTK;S(0.997)DAAVDT(0.001)S(0.001)S(0.001)EITTK;S(0.981)DAAVDT(0.008)S(0.01)S(0.001)EITTK;S(0.96)DAAVDT(0.011)S(0.013)S(0.016)EITTK ;;; 69.451 1.17E-41 4837200000 1467000 1557980 1062451 817522 1788830 1615110 1879100 1891530 1325611 1843800 TRUE FALSE FALSE 1364170.876 1434519.991 1473860.481 1903232.531 1564458.261 1415854.149 1408929.305 1460869.911 1440516.029 1382100.479 0.987027279 1.037927425 1.066391701 1.377058007 1.131942493 1.024422009 1.019411632 1.056992551 1.042265776 1 20.39843107 -6.26068328 24.59843409 1.031605004 1.126800994 0.177394912 0.097824753 107.5028447 3497494.53 0.036492076 0.034472457 5.49E-07 6.26068328 0.09519599 (ac)S(ph)DEFSLADALPEHSPAK ddPTM_HeLa_A485_30min_R1 1 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 0 S(0.677)DEFS(0.319)LADALPEHS(0.005)PAK 43.382 0.00024308 2251200000 72330 86934 67154 74393 92384 87860 104050 106050 82018 126500 TRUE FALSE FALSE 88419.55896 97100.17507 91997.05911 78456.90122 83185.92458 92460.21374 81818.86749 80041.07122 98478.26029 94965.87806 0.931066619 1.022474357 0.968738046 0.826158856 0.875955936 0.973615109 0.861560691 0.842840322 1.036985729 1 16.53512162 -4.475826774 0.001139273 1.850573321 1.54E-06 0.00257116 0.073478988 9805053.292 1757.657366 1415936.799 1439170.703 3.34E-05 4.475826774 -1.85057178 (ac)S(ph)DKPDMAEIEK ddPTM_HeLa_A485_30min_R1 4 SDKPDMAEIEK 11 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK ;;; 71.614 7.41E-06 2522470000 5756870 3804830 2551000 11281700 4796660 4525880 7996950 5754120 3889050 13408000 TRUE FALSE FALSE 7037465.871 4249771.771 3494721.056 11897990.7 4319087.688 4762848.078 6288336.303 4342913.048 4669546.663 10065632.36 0.699157849 0.422206139 0.347193394 1.182041056 0.429092533 0.473179221 0.624733358 0.431459534 0.463909916 1 23.26293447 -10.60113265 6.155095269 1.00153391 0.562612478 0.24602887 0.229147093 0.004818346 0.000312242 0.221639533 0.053593026 2.51E-11 10.60113265 -0.438921432 (ac)S(ph)DKPDMAEIEK ddPTM_HeLa_A486_30min_R1 5 SDKPDMAEIEK 11 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK ;;;; 71.614 2.19E-05 3497580000 8140660 8586100 2982070 5280830 6079720 11124240 13748300 11351350 6487810 15778300 TRUE FALSE FALSE 7570041.772 7905706.166 4136807.367 12294039.12 5317144.826 9751844.372 10308329.93 8766895.403 7050178.595 11827310.98 0.64004758 0.668428029 0.349767362 1.039461898 0.44956498 0.824519148 0.871570042 0.741241641 0.596093111 1 23.49561877 -14 0.084300882 1.943067389 0.422654351 0.211211299 0.188272607 370.4438597 2.189686489 64.97687504 5.350740852 1.00E-14 14 -1.520413039 (ac)S(ph)DKPDMAEIEKFDK ddPTM_HeLa_A485_30min_R1 4 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK ;;; 104.79 0.00010435 2060990000 2261570 1386980 891630 4529670 2350450 2406530 4661600 4093460 1620390 6675990 TRUE FALSE FALSE 2764648.444 1549175.246 1221481.041 4777114.402 2116430.945 2532532.19 3665611.078 3089532.517 1945587.41 5011788.555 0.551629107 0.309106266 0.243721583 0.953175568 0.42229055 0.505315051 0.731397791 0.616453085 0.388202213 1 22.25689412 -14 0.166046445 2.735211974 0.414759607 0.335525366 0.198636381 159.2352434 1.486594852 91.66262644 0.779106889 1.00E-14 14 -2.320452367 (ac)S(ph)DKPDMAEIEKFDK ddPTM_HeLa_A486_30min_R1 6 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK ;;;;; 114.86 3.05E-11 4235218000 1656097 1399487 446284 1443154 1248368 2171475 3263290 2856080 1092870 3840780 TRUE FALSE FALSE 1540013.152 1288586.553 619097.1167 3359735.445 1091786.045 1903580.492 2446780.326 2205812.932 1187600.852 2879023.689 0.534908121 0.447577614 0.215037174 1.166970407 0.379220931 0.66118959 0.849864604 0.766166996 0.412501243 1 21.45714823 -9.491455687 0.070271348 1.688439248 1.21E-17 0.189533935 0.257168805 145.6425293 2.480441577 39.73677986 20.65981154 3.23E-10 9.491455687 -1.688439248 (ac)S(ph)DLEDDETPQLSAHALAALQEFYAEQK ddPTM_HeLa_A485_30min_R1 1 SDLEDDETPQLSAHALAALQEFYAEQK 27 0 Q8WVE0 Q8WVE0 N6AMT2 Protein-lysine N-methyltransferase N6AMT2 1 0 S(0.851)DLEDDET(0.122)PQLS(0.027)AHALAALQEFYAEQK 54.744 8.89E-10 15674000 10167 11604 12586 9444.4 18012 10794 15155 18041 11144 17914 TRUE FALSE FALSE 12428.61407 12960.98686 17242.08515 9960.323658 16218.66204 11359.15715 11917.01045 13616.41646 13380.49858 13448.36948 0.924172562 0.96375898 1.282094842 0.740634296 1.205994679 0.844649395 0.886130505 1.012495714 0.994953225 1 13.71514365 (ac)S(ph)DNDDIEVES(ph)DADKR ddPTM_HeLa_A485_30min_R1 2 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 2 0 S(1)DNDDIEVES(1)DADKR;S(1)DNDDIEVES(1)DADKR ; 50.354 9.52E-05 1713490000 1312220 1157040 952280 2109400 1642040 1237530 2166640 1813680 1225380 2856400 TRUE FALSE FALSE 1604118.812 1292345.763 1304568 2224631.181 1478552.732 1302325.157 1703719.664 1368872.136 1471302.526 2144352.048 0.748066911 0.60267425 0.608373984 1.037437478 0.689510257 0.607328054 0.794514905 0.638361661 0.686129186 1 21.03211035 -10.03947964 3.940123574 1.000043639 0.712217374 0.325359019 0.124202245 238566076.1 440644915.5 148337.8545 0.031535832 9.13E-11 10.03947964 -0.287826264 (ac)S(ph)DNDDIEVES(ph)DADKR ddPTM_HeLa_A486_30min_R1 2 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 2 0 S(1)DNDDIEVES(1)DADKR;S(1)DNDDIEVES(1)DADKR ; 78.234 6.88E-13 1579620000 1174700 1409360 846370 1007280 1408730 1652570 2181430 1991110 1027210 2287560 TRUE FALSE FALSE 1092359.596 1297677.181 1174107.131 2344998.745 1232033.948 1448692.716 1635613.141 1537777.719 1116249.39 1714740.086 0.637040916 0.756777771 0.684714342 1.367553464 0.718496032 0.844846824 0.953854846 0.896799305 0.650972937 1 20.70955848 (ac)S(ph)DNDDIEVES(ph)DEEQPR ddPTM_HeLa_A485_30min_R1 2 SDNDDIEVESDEEQPR 16 0 G3V5L1;P61244-6;P61244-5;P61244-3;P61244-4;P61244 G3V5L1 MAX Protein max 2 0 S(1)DNDDIEVES(1)DEEQPR;S(1)DNDDIEVES(1)DEEQPR ; 90.614 1.02E-67 402060000 4927.7 17168.2 11124.5 0 15053 7224.9 8824.9 19599.3 12035.7 15679 TRUE FALSE FALSE 6023.849865 19175.87165 15239.91548 0 13554.27047 7603.184592 6939.388022 14792.54094 14451.15459 11770.51385 0.511774587 1.629144818 1.294753625 0 1.151544498 0.645951799 0.589556931 1.256745554 1.227742032 1 13.52288968 -9.619746677 10.69002969 0.999995577 0.926157022 0.00248831 0.45851841 0 0 0.447737095 0.108592196 2.40E-10 9.619746677 -0.073838554 (ac)S(ph)DNDDIEVES(ph)DEEQPR ddPTM_HeLa_A486_30min_R1 2 SDNDDIEVESDEEQPR 16 0 G3V5L1;P61244-6;P61244-5;P61244-3;P61244-4;P61244 G3V5L1 MAX Protein max 2 0 S(1)DNDDIEVES(1)DEEQPR;S(1)DNDDIEVES(1)DEEQPR ; 77.593 5.12E-26 464860000 5574.5 12718.3 6564.2 0 11635.4 6157.3 20488.5 2808.7 6352.4 12041.1 TRUE FALSE FALSE 5183.756337 11710.45559 9106.034035 0 10175.97964 5397.674929 15362.06059 2169.220323 6903.031147 9025.930186 0.57431824 1.297423684 1.008874858 0 1.12741617 0.598018688 1.701991959 0.240332052 0.764799971 1 13.1398599 -10.15150883 4.472871821 1.000023262 0.820987773 0.013538073 0.475106262 625966589 8.697840143 184940.0812 0.111425916 7.05E-11 10.15150883 -0.179035489 (ac)S(ph)DNDDIEVESDADKR ddPTM_HeLa_A485_30min_R1 4 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 1 0 S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR ;;; 128.28 1.42E-40 6247600000 3756400 3868230 3450850 5602640 5032830 4481040 6451150 6278260 3900420 7807280 TRUE FALSE FALSE 4591998.221 4320585.849 4727463.017 5908698.037 4531743.774 4715660.325 5072809.101 4738506.891 4683198.517 5861068.778 0.783474549 0.737166891 0.806587194 1.008126378 0.773194096 0.80457345 0.865509226 0.80847147 0.799034902 1 22.48273234 -11.61300193 2.089926772 4.3930689 0.82241303 0.371747777 0.06990133 2695299.032 118699.9383 43710710.7 0.018308623 2.44E-12 11.61300193 -3.570655871 (ac)S(ph)DNDDIEVESDADKR ddPTM_HeLa_A486_30min_R1 4 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 1 0 S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR ;;; 145.91 4.14E-50 7453400000 4345480 4561900 2869830 2174080 4614100 5222700 6028700 5890900 3469910 6439600 TRUE FALSE FALSE 4040884.292 4200398.43 3981105.033 5061368.112 4035356.553 4578376.375 4520255.495 4549670.667 3770684.593 4827082.245 0.837127707 0.870173371 0.824743568 1.048535711 0.835982556 0.948476977 0.936436395 0.942530174 0.781151926 1 22.20271998 (ac)S(ph)DNGELEDKPPAPPVR ddPTM_HeLa_A485_30min_R1 3 SDNGELEDKPPAPPVR 16 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR ;; 90.685 9.96E-06 2612010000 876050 899520 865680 1172770 1172800 994660 1398560 1311280 922800 1528230 TRUE FALSE FALSE 1070924.3 1004711.039 1185931.056 1236835.455 1056031.914 1046738.86 1099746.231 989686.524 1107997.496 1147270.386 0.933454148 0.875740411 1.033697959 1.078067969 0.920473436 0.912373293 0.958576325 0.862644531 0.965768409 1 20.12977401 (ac)S(ph)DNGELEDKPPAPPVR ddPTM_HeLa_A486_30min_R1 3 SDNGELEDKPPAPPVR 16 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR ;; 76.655 1.39E-08 2521000000 1617260 1758580 1246930 781210 1939150 1865410 2317660 2167450 1400420 2261630 TRUE FALSE FALSE 1503898.426 1619223.716 1729774.69 1818696.36 1695923.725 1635274.68 1737756.954 1673968.95 1521809.533 1695303.127 0.887097063 0.955123417 1.020333569 1.072785351 1.000366069 0.964591319 1.025042027 0.987415715 0.897662199 1 20.69311183 -4.412567944 3.071283058 0.998148174 0.884926674 0.377719144 0.04276571 0.314487233 4.905816443 0.011581535 0.070022718 3.87E-05 4.412567944 -0.1132215 (ac)S(ph)DQDHSMDEMTAVVK ddPTM_HeLa_A485_30min_R1 3 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 0 S(0.773)DQDHS(0.227)MDEMTAVVK;S(0.963)DQDHS(0.037)MDEMTAVVK;S(1)DQDHSMDEMTAVVK ;; 108.37 3.88E-25 778880000 329550 366623 335029 386811 480884 418839 528341 553394 358906 517603 TRUE FALSE FALSE 402857.2606 409496.3707 458970.1688 407941.5055 433005.5005 440768.7624 415456.6292 417673.2538 430935.1421 388574.0979 1.036757887 1.053843714 1.181165115 1.049842251 1.114344736 1.134323582 1.06918251 1.074887019 1.109016644 1 18.56783021 -10.25133152 5.022245506 0.999983912 1.092578803 0.298968117 0.041996786 7.48E-06 1.12E-06 0.040224528 0.009754186 5.61E-11 10.25133152 0.092594891 (ac)S(ph)DQDHSMDEMTAVVK ddPTM_HeLa_A486_30min_R1 5 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 0 S(0.61)DQDHS(0.39)MDEMTAVVK;S(1)DQDHSMDEMTAVVK;S(1)DQDHSMDEMTAVVK;S(1)DQDHSMDEMTAVVK;S(0.744)DQDHS(0.255)MDEMTAVVK ;;;; 117.79 5.03E-58 1475205000 853179 884922 771681 362270 1111593 976375 1113877 1076621 787807 1072181 TRUE FALSE FALSE 793375.5579 814797.5579 1070496.55 843382.8681 972166.6407 855919.7796 835173.1932 831497.9008 856094.7451 803699.8989 0.987153985 1.013808213 1.331960538 1.049375357 1.209613989 1.064974353 1.039160506 1.034587539 1.065192053 1 19.61629737 -6.507660774 23.30941637 1.03968158 1.122273436 0.148975459 0.094437697 583.3155599 893471.2323 0.034489083 0.02940398 3.11E-07 6.507660774 0.082591856 (ac)S(ph)DQEAKPSTEDLGDK ddPTM_HeLa_A485_30min_R1 2 SDQEAKPSTEDLGDK 15 1 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.985)DQEAKPS(0.008)T(0.008)EDLGDK;S(1)DQEAKPSTEDLGDK ; 97.214 1.46E-08 1236090000 1449360 1000130 647630 2696700 1207370 1275710 2048770 1586230 1031490 3392600 TRUE FALSE FALSE 1771765.132 1117086.504 887215.2871 2844013.893 1087160.003 1342504.203 1611033.553 1197204.605 1238500.582 2546887.256 0.695659035 0.438608541 0.348352792 1.116662658 0.426858315 0.527115678 0.632550007 0.470065804 0.486280097 1 21.28030367 -10.12470316 4.674201148 1.000034511 0.570196252 0.280447957 0.205974272 275117358.5 7.156202004 103133.2317 0.049102245 7.50E-11 10.12470316 -0.429838259 (ac)S(ph)DQEAKPSTEDLGDK ddPTM_HeLa_A486_30min_R1 2 SDQEAKPSTEDLGDK 15 1 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.995)DQEAKPS(0.003)T(0.003)EDLGDK;S(0.992)DQEAKPS(0.004)T(0.004)EDLGDK ; 69.261 6.91E-09 1030820000 825190 793800 274630 407720 615410 933570 1235290 990030 554880 1541800 TRUE FALSE FALSE 767348.4423 730896.397 380974.0908 949192.765 538219.5393 818395.6252 926207.3764 764621.7812 602977.4452 1155723.245 0.663955186 0.632414724 0.329641281 0.821297633 0.465699329 0.708124224 0.801409317 0.661595918 0.521731693 1 20.14036453 -6.442415661 11.40208108 0.723223663 0.584689609 0.180957679 0.164580641 1.588475665 221.093375 0.056057106 0.049416468 3.61E-07 6.442415661 -0.138534054 (ac)S(ph)DQEAKPSTEDLGDKK ddPTM_HeLa_A485_30min_R1 10 SDQEAKPSTEDLGDKK 16 2 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(0.999)DQEAKPS(0.001)T(0.001)EDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK ;;;;;;;;; 120.55 3.93E-33 47769540000 10270370 4928470 3088144 23521220 7469520 7753590 15585690 11197400 6068870 30763920 TRUE FALSE FALSE 12554978.37 5504811.695 4230576.974 24806124.69 6725828.362 8159555.983 12255680.01 8451220.093 7286836.542 23095040.91 0.543622262 0.238354706 0.183181186 1.074088796 0.291223921 0.353303379 0.53066284 0.365932242 0.315515204 1 24.46107977 -10.1953175 4.645521607 1.000103141 0.433070608 0.333761171 0.240378735 112305551.1 246472149.8 77143.93371 0.057889395 6.38E-11 10.1953175 -0.567032533 (ac)S(ph)DQEAKPSTEDLGDKK ddPTM_HeLa_A486_30min_R1 7 SDQEAKPSTEDLGDKK 16 2 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.959)DQEAKPS(0.018)T(0.022)EDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(1)DQEAKPSTEDLGDKK;S(0.978)DQEAKPS(0.018)T(0.004)EDLGDKK;S(1)DQEAKPSTEDLGDKK ;;;;;; 114.59 2.83E-25 50669370000 10614030 9255060 2785000 8345870 6550700 14825700 21374330 17018330 7470050 23898600 TRUE FALSE FALSE 9870041.308 8521655.339 3863426.585 19429607.14 5729050.123 12996655.87 16026246.56 13143627.77 8117559.949 17914235.01 0.550960803 0.475691836 0.215662382 1.08459039 0.319804341 0.725493211 0.894609597 0.733697407 0.453134613 1 24.0946031 -8.204489834 0.079258016 1.52801622 2.48E-15 0.214164245 0.244435186 44.45716901 1.986776303 20.91286525 15.89330547 6.24E-09 8.204489834 -1.52801622 (ac)S(ph)DQEAKPSTEDLGDKKEGEYIK ddPTM_HeLa_A485_30min_R1 3 SDQEAKPSTEDLGDKKEGEYIK 22 3 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.838)DQEAKPS(0.154)T(0.009)EDLGDKKEGEYIK;S(0.67)DQEAKPS(0.276)T(0.054)EDLGDKKEGEYIK;S(0.477)DQEAKPS(0.477)T(0.047)EDLGDKKEGEYIK ;; 88.945 7.56E-09 26110500000 4852600 2643600 1198240 8154200 5155200 5738900 14849300 15836200 3006000 12122000 TRUE FALSE FALSE 5932044.129 2952746.024 1641518.839 8599643.298 4641930.187 6039379.93 11676625.75 11952347.12 3609276.627 9100208.489 0.651858047 0.324470151 0.180382553 0.944994096 0.510090532 0.663652919 1.283116289 1.313414647 0.396614718 1 23.11746817 -6.586291876 6.237206001 1.022672259 0.522243855 0.360027601 0.29952725 0.223212993 16.46503057 0.116872584 0.090289487 2.59E-07 6.586291876 -0.500428403 (ac)S(ph)DQEAKPSTEDLGDKKEGEYIK ddPTM_HeLa_A486_30min_R1 2 SDQEAKPSTEDLGDKKEGEYIK 22 3 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(1)DQEAKPSTEDLGDKKEGEYIK;S(1)DQEAKPSTEDLGDKKEGEYIK ; 65.25 4.83E-05 1850170000 1458650 932680 283210 1579330 1046910 1689950 3372300 2972700 790650 4008400 TRUE FALSE FALSE 1356406.167 858771.04 392876.4966 3676760.055 915596.7858 1481461.151 2528514.871 2295881.104 859184.1786 3004670.55 0.451432576 0.285812047 0.130755266 1.223681596 0.304724518 0.493052775 0.841528157 0.764104106 0.285949546 1 21.51877538 -8.95514847 0.091503809 1.548232397 2.39E-19 0.184590707 0.308567245 67.45420969 2.024886721 21.87638705 11.76282893 1.11E-09 8.95514847 -1.548232397 (ac)S(ph)DSEKLNLDSIIGR ddPTM_HeLa_A485_30min_R1 1 SDSEKLNLDSIIGR 14 1 P62136-3;P62136;P62136-2;E9PMD7 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase 1 0 S(0.926)DS(0.074)EKLNLDSIIGR 45.359 0.01975 38874000 55255 61918 57810 86870 88930 71894 102080 107620 63275 121660 TRUE FALSE FALSE 67546.28412 69158.77149 79196.32467 91615.48813 80075.81695 75658.25867 80269.77408 81226.02626 75973.71211 91332.40099 0.739565405 0.757220556 0.867121896 1.003099526 0.876751471 0.828383551 0.878875111 0.889345133 0.831837456 1 16.47883914 -4.78579212 4.182407809 0.894385283 0.74438823 0.529470961 0.056550743 0.155346306 6.045926434 0.01506833 0.037387316 1.64E-05 4.78579212 -0.149997053 (ac)S(ph)DSEKLNLDSIIGR ddPTM_HeLa_A486_30min_R1 1 SDSEKLNLDSIIGR 14 1 P62136-3;P62136;P62136-2;E9PMD7 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase 1 0 S(0.923)DS(0.077)EKLNLDSIIGR 44.188 0.01975 46042000 107220 115750 78289 70105 142100 132580 162600 179240 111490 184630 TRUE FALSE FALSE 99704.43168 106577.5484 108604.5975 163207.9829 124276.493 116223.6276 121915.7602 138430.9648 121154.043 138397.4463 0.720421037 0.770083201 0.784729779 1.179270191 0.897968108 0.839781591 0.880910475 1.00024219 0.875406637 1 17.0784578 -5.028557548 24.8923282 0.946293856 0.753290616 0.487746438 0.091877838 562.6105162 490402.2903 0.025382276 0.044082354 9.36E-06 5.028557548 -0.193003241 (ac)S(ph)DSGEQNYGER ddPTM_HeLa_A485_30min_R1 3 SDSGEQNYGER 11 0 P62995;P62995-2 P62995 TRA2B Transformer-2 protein homolog beta 1 0 S(1)DSGEQNYGER;S(0.974)DS(0.026)GEQNYGER;S(0.998)DS(0.002)GEQNYGER ;; 100.57 3.69E-27 1748260000 29457.5 46151.9 74235 22395 54483 40391.9 28673 51589 39296 35998.6 TRUE FALSE FALSE 36010.21925 51548.96324 101697.6157 23618.38214 49058.48122 42506.75743 22546.77931 38936.71686 47182.34676 27024.81153 1.332487341 1.907468002 3.763120256 0.87395178 1.815312613 1.572878959 0.834299225 1.440776629 1.745889947 1 14.72199694 (ac)S(ph)DSGEQNYGER ddPTM_HeLa_A486_30min_R1 2 SDSGEQNYGER 11 0 P62995;P62995-2 P62995 TRA2B Transformer-2 protein homolog beta 1 0 S(1)DSGEQNYGER;S(1)DSGEQNYGER ; 110.88 1.19E-34 1946150000 9542.6 23157 32299 0 29703 0 10812 11451 7184.2 8685.2 TRUE FALSE FALSE 8873.713018 21321.95498 44806.0378 0 25977.37277 0 8106.723242 8843.857274 7806.93224 6510.369389 1.363012218 3.275076069 6.882257384 0 3.990153434 0 1.245201733 1.358426342 1.1991535 1 12.66852369 -5.8334376 1.462342154 1.090039883 3.493786891 0.230433049 1.764157514 0.576179884 2.565410822 0.671469266 0.867787061 1.47E-06 5.8334376 2.403747008 (ac)S(ph)DSGEQNYGERES(ph)R ddPTM_HeLa_A486_30min_R1 1 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 S(0.978)DS(0.022)GEQNY(0.027)GERES(0.973)R 56.225 1.62E-05 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)DVEENNFEGR ddPTM_HeLa_A485_30min_R1 2 SDVEENNFEGR 11 0 Q13595;F8WEH2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 S(1)DVEENNFEGR;S(1)DVEENNFEGR ; 61.161 1.78E-05 588980000 55094 68504 73619 75524 96197 91448 96384 138572 73537 92426 TRUE FALSE FALSE 67349.47023 76514.94689 100853.7316 79649.68488 86619.28891 96236.07587 75790.77102 104586.9997 88295.20138 69385.89917 0.97065068 1.102744906 1.453519128 1.147923221 1.248370201 1.386968779 1.092307975 1.507323548 1.272523703 1 16.08235488 -4.548397011 9.240149498 1.275712488 1.003180393 0.282757411 0.150148093 0.254468326 86.73365415 0.035706582 0.096386001 2.83E-05 4.548397011 -0.272532096 (ac)S(ph)DVEENNFEGR ddPTM_HeLa_A486_30min_R1 2 SDVEENNFEGR 11 0 Q13595;F8WEH2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 S(1)DVEENNFEGR;S(1)DVEENNFEGR ; 89.886 3.10E-11 758320000 78691 77109 69462 46582 99496 60768 61451 74582 71358 88098 TRUE FALSE FALSE 73175.16726 70998.60201 96359.54666 108445.2501 87016.28392 53271.062 46075.30984 57601.30671 77543.36889 66037.68738 1.108081918 1.075122477 1.45915992 1.642172136 1.317676124 0.806676674 0.697712347 0.872248999 1.174229019 1 16.01100198 -6.253230162 23.50951211 0.88891015 1.332394077 0.53299384 0.19133678 227.2649569 650839.9088 0.070484641 0.069218405 5.58E-07 6.253230162 0.443483927 (ac)S(ph)DVEENNFEGRES(ph)R ddPTM_HeLa_A485_30min_R1 1 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)DVEENNFEGRES(1)R 52.52 5.18E-08 16664000000 0 14369 0 0 13515 0 0 0 0 0 TRUE FALSE FALSE 0 16049.32956 0 0 12169.39915 0 0 0 0 0 0 (ac)S(ph)DVEENNFEGRES(ph)R ddPTM_HeLa_A486_30min_R1 2 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)DVEENNFEGRES(1)R;S(1)DVEENNFEGRES(1)R ; 52.784 4.17E-06 13687700000 67176 32787.3 15882 7703.1 20266 20278.2 24556 14671 30531 11070 TRUE FALSE FALSE 62467.3093 30189.11494 22031.93573 17933.20609 17724.04931 17776.48186 18411.82907 11330.73357 33177.45166 8297.999946 7.527995867 3.638119442 2.655089886 2.161148013 2.135942326 2.142261023 2.218827331 1.365477662 3.998246792 1 13.01854793 -4.046894835 1.437533087 2.163324884 12.16812052 0.826734726 0.737122934 0.72952949 0.933092828 0.194631887 12.09211571 8.98E-05 4.046894835 10.00479564 (ac)S(ph)EKS(ph)VEAAAELSAK ddPTM_HeLa_A485_30min_R1 3 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 2 0 S(1)EKS(1)VEAAAELSAK;S(1)EKS(1)VEAAAELSAK;S(1)EKS(1)VEAAAELSAK ;; 64.199 4.20E-08 406920000 1366200 1099140 776080 2812890 1751130 1319870 2713750 2242380 1089670 3785560 TRUE FALSE FALSE 1670106.477 1227674.862 1063184.287 2966551.058 1576781.349 1388976.352 2133935.143 1692432.789 1308356.774 2841889.56 0.587674658 0.43199246 0.374111754 1.043865708 0.554835547 0.488750996 0.750886021 0.595530809 0.460382695 1 21.43841906 -11.15918835 2.418682848 1.992081557 0.591296038 0.315521343 0.182167267 14236987.1 3385225.788 77459945.15 0.045985228 6.93E-12 11.15918835 -1.400785519 (ac)S(ph)EKS(ph)VEAAAELSAK ddPTM_HeLa_A486_30min_R1 3 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 2 0 S(1)EKS(0.999)VEAAAELS(0.001)AK;S(1)EKS(1)VEAAAELSAK;S(1)EKS(1)VEAAAELSAK ;; 70.98 4.02E-08 613850000 2357610 2292760 953550 2247020 2047500 3041760 4191640 3736650 1795260 5101190 TRUE FALSE FALSE 2192353.714 2111073.348 1322790.097 5231176.118 1790683.458 2666498.578 3142847.337 2885896.365 1950874.582 3823818.821 0.57334142 0.552085087 0.345934303 1.368050204 0.46829715 0.697339153 0.821913246 0.75471577 0.51019012 1 21.86658274 -13.99999992 0.040459903 2.137609274 4.54E-12 0.105584885 0.268546942 2129.892412 6.41986652 307.5745427 91.06712714 1.00E-14 13.99999992 -2.137609274 (ac)S(ph)EKSVEAAAELSAK ddPTM_HeLa_A485_30min_R1 4 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(0.5)EKS(0.5)VEAAAELSAK;S(0.95)EKS(0.05)VEAAAELSAK;S(0.851)EKS(0.149)VEAAAELSAK;S(0.756)EKS(0.244)VEAAAELSAK ;;; 70.488 2.46E-12 674457000 374450 519429 388473 675635 1182438 810412 1551120 2109320 586992 1268660 TRUE FALSE FALSE 457745.1107 580171.7031 532185.3284 712543.2293 1064710.321 852843.9192 1219710.541 1592005.963 704795.9102 952406.41 0.480619519 0.609164005 0.558779658 0.748150392 1.117915955 0.895462179 1.280661835 1.671561579 0.740015925 1 19.8612178 -5.689481644 1.19688341 1.19225022 0.518285889 0.536701109 0.237960901 0.346272316 1.041129311 0.095309568 0.150523028 2.04E-06 5.689481644 -0.673964331 (ac)S(ph)EKSVEAAAELSAK ddPTM_HeLa_A486_30min_R1 3 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(0.951)EKS(0.049)VEAAAELSAK;S(0.979)EKS(0.021)VEAAAELSAK;S(0.769)EKS(0.23)VEAAAELSAK ;; 94.465 5.87E-18 543615000 721710 586050 474644 814070 1271500 881750 1445910 1800030 455994 1099850 TRUE FALSE FALSE 671121.8559 539609.2636 658438.8682 1895196.101 1112016.614 772968.65 1084128.025 1390202.463 495519.9271 824440.4012 0.814033197 0.654515794 0.798649444 2.298766652 1.348813828 0.937567651 1.314986533 1.686237673 0.6010379 1 19.65305568 -5.036611378 24.99844555 1.344125126 0.732350473 0.256161305 0.433344262 699.3380742 477511.227 0.117057037 0.202834288 9.19E-06 5.036611378 -0.611774654 (ac)S(ph)ESGHSQPGLYGIER ddPTM_HeLa_A485_30min_R1 2 SESGHSQPGLYGIER 15 0 Q9H0W8-2;Q9H0W8;M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7 Q9H0W8-2 SMG9 Protein SMG9 1 0 S(0.478)ES(0.478)GHS(0.045)QPGLYGIER;S(0.405)ES(0.405)GHS(0.19)QPGLYGIER ; 56.225 1.23E-07 512410000 24816 35631 29184 29593 45057 42965 64036 79995 27527 48100 TRUE FALSE FALSE 30336.23359 39797.7355 39980.37605 31209.59066 40570.96688 45214.58096 50354.18547 60376.10082 33051.41641 36109.55521 0.840116512 1.102138624 1.10719658 0.864302827 1.123552108 1.252150039 1.394483681 1.672025603 0.91530943 1 15.14009303 -6.141560603 2.954942752 1.300834622 0.996282539 0.238597977 0.213299611 0.339570208 5.694454515 0.073938495 0.074026046 7.22E-07 6.141560603 -0.304552083 (ac)S(ph)ESGHSQPGLYGIER ddPTM_HeLa_A486_30min_R1 1 SESGHSQPGLYGIER 15 0 Q9H0W8-2;Q9H0W8;M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7 Q9H0W8-2 SMG9 Protein SMG9 1 0 S(0.433)ES(0.433)GHS(0.134)QPGLYGIER 54.7 1.10E-07 448870000 64267 51385 45036 26954 111040 60107 92314 133580 39322 64895 TRUE FALSE FALSE 59762.21518 47313.06546 62475.14531 62750.27418 97112.32779 52691.60946 69216.0608 103166.75 42730.46262 48644.8696 1.228540968 0.972621899 1.284311086 1.289966952 1.996352926 1.083189448 1.422885113 2.120814607 0.878416634 1 15.57000004 -5.189119842 2.619013269 1.46294713 1.111645901 0.07023493 0.384905248 0.595299943 7.984215905 0.107520061 0.208388659 6.47E-06 5.189119842 -0.351301229 (ac)S(ph)ETAPAAPAAAPPAEKAPVK ddPTM_HeLa_A485_30min_R1 3 SETAPAAPAAAPPAEKAPVK 20 1 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.863)ET(0.137)APAAPAAAPPAEKAPVK;S(0.831)ET(0.169)APAAPAAAPPAEKAPVK;S(0.5)ET(0.5)APAAPAAAPPAEKAPVK ;; 98.439 3.37E-19 1114860000 553660 937340 653610 565120 1133510 1047640 1413110 3267090 805170 1477020 TRUE FALSE FALSE 676819.7569 1046953.759 895407.538 595991.0746 1020653.764 1102492.81 1111187.504 2465831.055 966760.2335 1108826.097 0.610393063 0.944200143 0.807527475 0.537497338 0.92048137 0.994288296 1.002129647 2.223821267 0.871877237 1 20.08060169 -7.016124214 24.12434907 1.451304685 0.818720176 0.316718516 0.362729986 450.0747317 673379.7326 0.156106174 0.093539508 9.64E-08 7.016124214 -0.632584509 (ac)S(ph)ETAPAAPAAAPPAEKAPVK ddPTM_HeLa_A486_30min_R1 3 SETAPAAPAAAPPAEKAPVK 20 1 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.5)ET(0.5)APAAPAAAPPAEKAPVK;S(0.819)ET(0.181)APAAPAAAPPAEKAPVK;S(0.839)ET(0.161)APAAPAAAPPAEKAPVK ;; 100.11 4.93E-27 772750000 1073420 997600 647800 432479 1225690 863250 1386780 1371120 576520 1346970 TRUE FALSE FALSE 998178.8011 918546.5428 898645.5087 1006832.968 1071952.531 756750.9919 1039792.976 1058945.907 626493.2178 1009679.945 0.98860912 0.909740307 0.890030067 0.997180318 1.06167557 0.749495913 1.029824334 1.048793643 0.620486939 1 19.94546662 -7.733649489 24.99961486 0.810242346 0.955466456 0.192147763 0.122135098 296.6763745 266889.3871 0.078356613 0.029601733 1.85E-08 7.733649489 0.14522411 (ac)S(ph)ETAPAAPAAAPPAEKAPVKK ddPTM_HeLa_A485_30min_R1 2 SETAPAAPAAAPPAEKAPVKK 21 2 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.971)ET(0.029)APAAPAAAPPAEKAPVKK;S(0.796)ET(0.204)APAAPAAAPPAEKAPVKK ; 56.055 7.33E-05 1113740000 1035440 1888590 1070970 936840 2055770 2408800 3055400 8627700 1567260 2909700 TRUE FALSE FALSE 1265770.056 2109444.172 1467166.37 988017.197 1851090.321 2534921.043 2402588.83 6511743.047 1881794.706 2184365.339 0.579468111 0.965701174 0.671667117 0.452313164 0.847427071 1.160484008 1.099902469 2.981068657 0.861483504 1 21.05878274 -6.697050276 2.036564042 1.699232635 0.714502684 0.289596279 0.568551497 0.34480469 2.927064353 0.263417538 0.177441328 2.01E-07 6.697050276 -0.984729951 (ac)S(ph)ETAPAAPAAPAPAEKTPVK ddPTM_HeLa_A485_30min_R1 2 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 S(0.979)ET(0.021)APAAPAAPAPAEKTPVK;S(0.5)ET(0.5)APAAPAAPAPAEKTPVK ; 119.32 8.28E-27 788670000 276030 773017 454607 203996 744467 1003370 1172830 3502110 527874 619127 TRUE FALSE FALSE 337431.9212 863414.6138 622785.0471 215139.7849 670345.2515 1055904.902 922245.2894 2643212.031 633813.4699 464790.0331 0.725987859 1.857644425 1.339927715 0.462875212 1.442253929 2.271789037 1.984219161 5.68689482 1.363655467 1 18.82621961 -6.48988668 1.957412549 2.914866258 1.162228608 0.193854388 1.253061611 0.444127648 3.404553595 0.53940093 0.421316551 3.24E-07 6.48988668 -1.752637651 (ac)S(ph)GDEMIFDPTMSK ddPTM_HeLa_A485_30min_R1 18 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSK;S(0.999)GDEMIFDPT(0.001)MSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(0.998)GDEMIFDPT(0.001)MSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(0.999)GDEMIFDPT(0.001)MSK;S(0.999)GDEMIFDPT(0.001)MSK;S(1)GDEMIFDPTMSK ;;;;;;;;;;;;;;;;; 82.261 5.75E-57 12499923000 8354536 9090592 8463829 9992966 11645747 9387690 12412971 12868269 8987928 13144624 TRUE FALSE FALSE 10212973.71 10153657.66 11594951.56 10538856.43 10486255.54 9879214.932 9760838.341 9712305.851 10791722.71 9867911.146 1.034968147 1.028957143 1.175015805 1.067992635 1.062662136 1.00114551 0.989149395 0.984231182 1.093617742 1 23.23431329 -6.123453622 3.560211531 1.011194063 1.079218103 0.292841831 0.046980462 0.321439715 7.413304999 0.016677456 0.016841081 7.53E-07 6.123453622 0.06802404 (ac)S(ph)GDEMIFDPTMSK ddPTM_HeLa_A486_30min_R1 15 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(0.999)GDEMIFDPT(0.001)MSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK ;;;;;;;;;;;;;; 83.862 3.81E-68 7714314000 12368610 14742050 10727920 5232792 15543740 14669030 16706690 16512950 12534520 15248840 TRUE FALSE FALSE 11501634.31 13573836.27 14882057.93 12182204.23 13594099.19 12859314.22 12526499.46 12753311.76 13621022.29 11430431.21 1.006229258 1.187517428 1.301968198 1.065769436 1.189290145 1.125006921 1.095890367 1.115733215 1.191645532 1 23.44637649 -6.506665523 20.31405376 1.110459802 1.156093813 0.0625295 0.085451286 202.3700748 253560.8741 0.030546952 0.0260822 3.11E-07 6.506665523 0.045634011 (ac)S(ph)GDEMIFDPTMSKK ddPTM_HeLa_A485_30min_R1 10 SGDEMIFDPTMSKK 14 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(0.999)GDEMIFDPT(0.001)MSKK;S(0.999)GDEMIFDPT(0.001)MS(0.001)KK ;;;;;;;;; 124.1 4.02E-17 17108640000 10141100 11935820 8868910 10012610 14923680 14927360 20386920 25195500 11019410 14522040 TRUE FALSE FALSE 12396952.71 13331610.32 12149888.88 10559573.53 13437826.02 15708933.49 16031088 19016264.12 13230904.51 10901962.69 1.137130356 1.222863323 1.11446803 0.968593806 1.232606128 1.440927101 1.47047724 1.744297304 1.213625921 1 23.37808455 -6.105743022 3.853335929 1.425455287 1.117037572 0.276095174 0.191076406 0.261457764 6.92088804 0.063101092 0.064043931 7.84E-07 6.105743022 -0.308417715 (ac)S(ph)GDEMIFDPTMSKK ddPTM_HeLa_A486_30min_R1 10 SGDEMIFDPTMSKK 14 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(0.999)GDEMIFDPT(0.001)MS(0.001)KK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(0.999)GDEMIFDPT(0.001)MSKK;S(1)GDEMIFDPTMSKK;S(0.998)GDEMIFDPT(0.002)MSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK ;;;;;;;;; 136.48 8.34E-22 15790000000 12173050 11380390 7096900 5574010 13907140 11607100 15978220 16069940 8287070 15345870 TRUE FALSE FALSE 11319782.06 10478566.45 9845009.742 12976576.97 12162776.82 10175134.01 11980300.36 12411165.47 9005399.9 11503164.27 0.984058107 0.910929046 0.855852313 1.1280876 1.057341836 0.884550875 1.041478682 1.078934907 0.782862845 1 23.45552743 -5.220788798 24.99782707 0.999253349 0.916344774 0.119808783 0.098163397 1105.614966 679889.816 0.026463681 0.045835893 6.01E-06 5.220788798 -0.082908575 (ac)S(ph)GEDEQQEQTIAEDLVVTK ddPTM_HeLa_A485_30min_R1 5 SGEDEQQEQTIAEDLVVTK 19 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.997)GEDEQQEQT(0.003)IAEDLVVTK;S(0.955)GEDEQQEQT(0.045)IAEDLVVTK ;;;; 111.83 1.49E-145 4407827000 1105726 1184595 1125917 1192652 1644595 1352200 1668820 1945890 1216012 1664340 TRUE FALSE FALSE 1351690.934 1323123.081 1542440.552 1257803.559 1480853.347 1422999.101 1312262.974 1468657.426 1460054.454 1249450.668 1.081828174 1.058963843 1.234494959 1.006685251 1.185203534 1.138899788 1.050271938 1.175442508 1.168557104 1 20.25286251 (ac)S(ph)GEDEQQEQTIAEDLVVTK ddPTM_HeLa_A486_30min_R1 3 SGEDEQQEQTIAEDLVVTK 19 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK ;; 124.42 7.61E-90 3039340000 1303200 1577040 1117000 702697 1657750 1553270 1678320 1660920 1288330 1733660 TRUE FALSE FALSE 1211852.41 1452069.607 1549532.314 1635914.128 1449819.537 1361643.34 1258386.585 1282764.774 1400003.482 1299540.252 0.932523951 1.117371782 1.192369619 1.258840675 1.115640347 1.047788507 0.968332133 0.987091221 1.077306747 1 20.30956989 -6.342832524 3.340787436 1.007709048 1.135121023 0.302941189 0.082023662 0.318161091 6.874590407 0.032646436 0.028795253 4.54E-07 6.342832524 0.127411975 (ac)S(ph)GGGVIRGPAGNNDCR ddPTM_HeLa_A485_30min_R1 2 SGGGVIRGPAGNNDCR 16 1 J3KTL2;Q07955;Q07955-3;Q07955-2;J3QQV5;J3KSW7 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 S(1)GGGVIRGPAGNNDCR;S(1)GGGVIRGPAGNNDCR ; 68.355 4.09E-08 954610000 38322 62095 71243 32563 80955 62053 48242 70344 53238 66337 TRUE FALSE FALSE 46846.59669 69356.4701 97598.75037 34341.83424 72894.83595 65301.99913 37934.7026 53092.0237 63922.37827 49800.40674 0.94068703 1.392688828 1.959798258 0.689589433 1.463739771 1.311274413 0.761734795 1.066096186 1.283571409 1 15.60386991 -6.684139923 24.99281355 1.033354288 1.308145429 0.130669044 0.333500531 71.91346211 23248.10434 0.127343322 0.098639678 2.07E-07 6.684139923 0.27479114 (ac)S(ph)GGKYVDSEGHLYTVPIR ddPTM_HeLa_A485_30min_R1 4 SGGKYVDSEGHLYTVPIR 18 1 Q03135 Q03135 CAV1 Caveolin-1 1 0 S(0.871)GGKY(0.124)VDS(0.005)EGHLYTVPIR;S(0.879)GGKY(0.12)VDS(0.001)EGHLYTVPIR;S(0.938)GGKY(0.062)VDSEGHLYTVPIR;S(0.853)GGKY(0.125)VDS(0.022)EGHLYTVPIR ;;; 69.737 2.09E-25 2207730000 1181790 1533050 951650 1132180 1340910 1781260 2012420 2465630 1268330 2550010 TRUE FALSE FALSE 1444675.108 1712326.862 1303704.936 1194028.127 1207404.292 1874524.019 1582450.027 1860930.377 1522872.197 1914339.436 0.754659848 0.894474005 0.68102078 0.623728532 0.630715885 0.979201485 0.826629801 0.972100528 0.795507927 1 20.86841523 -6.264617931 24.99923807 0.907440598 0.719612248 0.527414718 0.093459948 257.4436728 2024780.579 0.033794783 0.031051523 5.44E-07 6.264617931 -0.187828351 (ac)S(ph)GGKYVDSEGHLYTVPIR ddPTM_HeLa_A486_30min_R1 4 SGGKYVDSEGHLYTVPIR 18 1 Q03135 Q03135 CAV1 Caveolin-1 1 0 S(0.96)GGKY(0.039)VDS(0.001)EGHLYTVPIR;S(0.825)GGKY(0.169)VDS(0.006)EGHLYTVPIR;S(0.805)GGKY(0.192)VDS(0.002)EGHLYTVPIR;S(0.35)GGKY(0.311)VDS(0.338)EGHLY(0.001)TVPIR ;;; 66.12 1.20E-34 1367320000 1118206 1150245 1011714 270941 1769170 1138005 1334408 1329426 1094081 1414610 TRUE FALSE FALSE 1039825.534 1059095.397 1403476.755 630764.3406 1547264.202 997609.5135 1000525.004 1026744.721 1188916.822 1060382.448 0.980613679 0.998786239 1.323557135 0.594846078 1.459156745 0.940801609 0.94355108 0.96827774 1.121215109 1 20.01615327 -10.30713681 6.578297897 0.999999006 1.03592332 0.002461241 0.221422352 3.00E-06 3.17E-07 0.199334795 0.048344451 4.93E-11 10.30713681 0.035924314 (ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A485_30min_R1 1 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 S(1)KGPAVGIDLGTTYSCVGVFQHGK 135.21 3.39E-38 239900000 100930 89498 66659 148370 132760 119890 164790 181880 95272 220890 TRUE FALSE FALSE 123381.5303 99964.01257 91318.93801 156475.0774 119541.9483 126167.255 129581.2703 137273.6448 114392.2165 165826.1882 0.744041286 0.602824039 0.55069069 0.943608963 0.72088703 0.76084035 0.781428264 0.82781644 0.689832033 1 17.33931234 -14 0.090529024 1.808941188 0.531278388 0.395968667 0.101793393 221.7090874 1.390541475 34.98901059 2.411879723 1.00E-14 14 -1.2776628 (ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A486_30min_R1 2 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 S(1)KGPAVGIDLGTTYSCVGVFQHGK;S(1)KGPAVGIDLGTTYSCVGVFQHGK ; 118.35 3.81E-38 424460000 495930 468060 271099 316655 471340 613860 753110 686470 407830 778550 TRUE FALSE FALSE 461167.868 430969.221 376075.7931 737188.8429 412220.1421 538128.1945 564673.9124 530175.7665 443181.0328 583596.0125 0.790217647 0.73847184 0.644411177 1.263183482 0.706345029 0.922090252 0.967576715 0.908463655 0.759396951 1 19.1546105 (ac)S(ph)KPHSEAGTAFIQTQQLHAAMADTFLEHMCR ddPTM_HeLa_A486_30min_R1 1 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR 31 1 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BR70;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 S(0.481)KPHS(0.481)EAGT(0.038)AFIQTQQLHAAMADTFLEHMCR 61.241 1.09E-50 154420000 24014 26686 22272 14937 29642 30960 40475 37531 25295 36697 TRUE FALSE FALSE 22330.74261 24571.30417 30896.31486 34774.09087 25924.02396 27140.46998 30347.7269 28986.0106 27487.59097 27507.83234 0.811795794 0.893247562 1.123182462 1.264152349 0.942423366 0.986645172 1.103239489 1.053736632 0.99926416 1 14.74755484 -4.61916574 4.752046854 1.062597899 0.830065336 0.485303227 0.086582669 0.166246955 6.200412636 0.023558696 0.067731841 2.40E-05 4.61916574 -0.232532563 (ac)S(ph)KSES(ph)PKEPEQLRK ddPTM_HeLa_A485_30min_R1 2 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 2 0 S(0.744)KS(0.454)ES(0.803)PKEPEQLRK;S(0.953)KS(0.082)ES(0.964)PKEPEQLRK ; 53.779 0.00032345 1350300000 531970 318100 213757 2016230 754450 549080 1477760 1195680 385060 2945000 TRUE FALSE FALSE 650304.8912 355299.0279 292834.6095 2126371.54 679334.309 577828.9798 1162024.504 902437.6052 462338.01 2210865.699 0.294140387 0.160705839 0.132452464 0.961782319 0.307270726 0.261358698 0.525597057 0.408182915 0.209120803 1 21.07617996 -11.33581355 2.167451028 4.373135729 0.36879951 0.411298177 0.228763787 25565842.22 2659795.21 423457565.4 0.060053959 4.62E-12 11.33581355 -4.004336219 (ac)S(ph)KSES(ph)PKEPEQLRK ddPTM_HeLa_A486_30min_R1 3 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 2 0 S(0.732)KS(0.298)ES(0.97)PKEPEQLRK;S(0.866)KS(0.488)ES(0.646)PKEPEQLRK;S(0.748)KS(0.257)ES(0.995)PKEPEQLRK ;; 62.765 0.00021319 2070130000 1475930 1314560 354099 3254640 1139450 2252300 4174740 3539160 1001670 5879700 TRUE FALSE FALSE 1372474.929 1210389.478 491215.6159 7576966.4 996529.5561 1974434.126 3130175.896 2733370.527 1088495.562 4407384.85 0.311403468 0.27462759 0.111452853 1.719152436 0.226104502 0.447983145 0.710211611 0.62017968 0.246970845 1 22.07149145 -14 0.060558201 2.176650522 6.24E-12 0.08047937 0.442496985 1272.045685 5.610858045 241.9568137 39.60060353 1.00E-14 14 -2.176650522 (ac)S(ph)KSESPKEPEQLR ddPTM_HeLa_A486_30min_R1 3 SKSESPKEPEQLR 13 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.978)KS(0.022)ESPKEPEQLR;S(0.942)KS(0.045)ES(0.013)PKEPEQLR;S(0.965)KS(0.035)ES(0.001)PKEPEQLR ;; 99.011 4.88E-17 2378660000 894360 1011180 484560 909500 1110220 1474460 2108780 1992130 839700 1961450 TRUE FALSE FALSE 831669.9825 931050.4141 672194.609 2117361.964 970965.8552 1292556.116 1581140.94 1538565.487 912485.8721 1470290.153 0.565650243 0.633242637 0.457185004 1.440098037 0.66039064 0.879116352 1.075393817 1.046436639 0.620616189 1 20.48766946 -5.177152659 24.99999996 0.951185504 0.560146239 0.420693568 0.219300681 85.35766858 25316.22443 0.05732062 0.099282235 6.65E-06 5.177152659 -0.391039265 (ac)S(ph)KSESPKEPEQLRK ddPTM_HeLa_A485_30min_R1 2 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.866)KS(0.13)ES(0.004)PKEPEQLRK;S(0.839)KS(0.136)ES(0.024)PKEPEQLRK ; 49.31 0.00027533 607810000 654160 404370 315210 1528060 973920 870030 1795270 1752270 632030 2280300 TRUE FALSE FALSE 799675.6352 451657.5539 431819.296 1611534.049 876953.1052 915583.4255 1411695.898 1322523.035 758872.6237 1711863.176 0.467137588 0.263839751 0.252251057 0.941391854 0.512279905 0.534846148 0.824654633 0.772563517 0.443302148 1 20.70713597 -5.338243272 0.177521603 1.007222702 3.35E-30 0.381864213 0.199652573 12.95145301 0.646335579 0.758633085 3.172150971 4.59E-06 5.338243272 -1.007222702 (ac)S(ph)KSESPKEPEQLRK ddPTM_HeLa_A486_30min_R1 2 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.862)KS(0.134)ES(0.004)PKEPEQLRK;S(0.863)KS(0.131)ES(0.006)PKEPEQLRK ; 48.112 0.00012199 717770000 570822 497459 187890 579393 614506 849030 1261890 1178900 385664 1158660 TRUE FALSE FALSE 530810.3255 458038.5371 260646.0399 1348856.185 537428.9274 744285.3109 946151.7751 910490.2052 419093.666 868523.9944 0.611163686 0.527375801 0.30010229 1.553044238 0.618784203 0.85695423 1.089378971 1.048319 0.482535507 1 19.72820618 -5.20084477 24.99999018 0.940024975 0.484329958 0.371465849 0.280124616 264.0052356 108921.9711 0.073485705 0.12728095 6.30E-06 5.20084477 -0.455695017 (ac)S(ph)LHQFLLEPITCHAWNR ddPTM_HeLa_A485_30min_R1 1 SLHQFLLEPITCHAWNR 17 0 A0A1W2PNV4;F8WFD3;E9PF58;Q92747 A0A1W2PNV4 ARPC1A Actin-related protein 2/3 complex subunit 1A 1 0 S(1)LHQFLLEPITCHAWNR 76.85 7.44E-06 29395000 1130 1547.9 2213.7 966.72 0 1597.6 1647.9 1971.7 1828.4 2460.4 TRUE FALSE FALSE 1381.364602 1728.91344 3032.63975 1019.529466 0 1681.247866 1295.812703 1488.137483 2195.343109 1847.06756 0.747869017 0.936031511 1.641867258 0.551971941 0 0.910225431 0.70155133 0.805675718 1.188555934 1 10.85102092 -7.744744728 19.95296873 1.094275181 0.787573281 0.093259609 0.383374736 53.71174411 64202.94013 0.283283276 0.105704513 1.80E-08 7.744744728 -0.306701899 (ac)S(ph)LLNKPK ddPTM_HeLa_A486_30min_R1 1 SLLNKPK 7 1 K7ERG4;P62316 K7ERG4 SNRPD2 Small nuclear ribonucleoprotein Sm D2 1 0 S(1)LLNKPK 50.039 0.017428 381630000 559210 597770 313500 268620 556710 636420 811610 757470 441450 841720 TRUE FALSE FALSE 520012.2668 550400.5282 434895.5958 625360.9353 486882.2407 557904.971 608536.5937 585010.6165 479715.2414 630947.8333 0.824176325 0.8723392 0.689273459 0.99114523 0.771667981 0.88423312 0.964480043 0.92719332 0.760308882 1 19.2671612 -5.963423219 0.962105536 0.906171525 0.817897932 0.132149778 0.09335481 1.233410583 2.477765482 0.047203921 0.059023145 1.09E-06 5.963423219 -0.088273593 (ac)S(ph)LPLNPKPFLNGLTGKPVMVK ddPTM_HeLa_A485_30min_R1 3 SLPLNPKPFLNGLTGKPVMVK 21 2 P62306;A0A0B4J254;F8W0W6 P62306 SNRPF Small nuclear ribonucleoprotein F 1 0 S(0.999)LPLNPKPFLNGLT(0.001)GKPVMVK;S(1)LPLNPKPFLNGLTGKPVMVK;S(1)LPLNPKPFLNGLTGKPVMVK ;; 108.18 1.84E-13 899284000 314887 256447 217890 359945 351552 417845 501420 576029 284855 469672 TRUE FALSE FALSE 384932.5268 286436.2459 298496.5782 379607.8839 316550.2485 439722.7181 394287.5208 434756.9846 342022.7857 352591.4141 1.091724051 0.812374421 0.846579259 1.076622597 0.897782067 1.247116919 1.11825616 1.233033384 0.970025849 1 18.42763782 -6.24632473 24.8006073 1.128536659 0.939490184 0.340633888 0.116294786 760.7867234 1248324.092 0.037421588 0.037274862 5.67E-07 6.24632473 -0.189046475 (ac)S(ph)LPLNPKPFLNGLTGKPVMVK ddPTM_HeLa_A486_30min_R1 3 SLPLNPKPFLNGLTGKPVMVK 21 2 P62306;A0A0B4J254;F8W0W6 P62306 SNRPF Small nuclear ribonucleoprotein F 1 0 S(1)LPLNPKPFLNGLTGKPVMVK;S(1)LPLNPKPFLNGLTGKPVMVK;S(1)LPLNPKPFLNGLTGKPVMVK ;; 106.03 1.97E-13 1366460000 1163500 1542610 958660 582450 1794120 1867850 1902900 1860860 1417500 1895730 TRUE FALSE FALSE 1081944.658 1420367.966 1329878.826 1355973.035 1569084.74 1637413.658 1426774.293 1437182.8 1540370.041 1421026.869 0.761382267 0.999536319 0.935857622 0.954220546 1.104190761 1.152274946 1.004044557 1.011369195 1.083983755 1 20.4385024 -3.343843631 0.725579098 1.052449596 1.92E-14 0.643743661 0.060982165 6.401859095 0.959168609 0.025239123 7.485865664 0.000453061 3.343843631 -1.052449596 (ac)S(ph)LSNKLTLDKLDVK ddPTM_HeLa_A485_30min_R1 1 SLSNKLTLDKLDVK 14 2 P00558 P00558 PGK1 Phosphoglycerate kinase 1 1 0 S(0.838)LS(0.157)NKLT(0.005)LDKLDVK 70.98 3.47E-05 150540000 168540 137610 76482 184220 180980 238230 386820 466540 139940 288900 TRUE FALSE FALSE 206031.1415 153702.2925 104775.8745 194283.4721 162960.9957 250703.3544 304172.747 352120.3335 168024.6744 216882.5468 0.949966443 0.708689079 0.483099613 0.8958004 0.751379021 1.155940661 1.402476831 1.623553111 0.774726583 1 17.72655443 -6.314159161 3.652412257 1.255263684 0.743599507 0.436505252 0.242851068 0.204619392 5.59760114 0.088002155 0.078861503 4.85E-07 6.314159161 -0.511664178 (ac)S(ph)QERPTFYR ddPTM_HeLa_A485_30min_R1 3 SQERPTFYR 9 1 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;B5TY33 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 1 0 S(1)QERPTFYR;S(1)QERPTFYR;S(0.991)QERPT(0.009)FYR ;; 90.37 7.25E-06 2698060000 122857 159612 124602 155524 194950 177576 182932 248816 152270 172756 TRUE FALSE FALSE 150186.1158 178277.235 170697.4649 164019.8823 175540.0935 186873.6048 143847.0838 187793.4859 182829.1923 129691.1085 1.158029394 1.374629587 1.316184794 1.264696433 1.353524505 1.440913004 1.109151471 1.448005866 1.40972804 1 16.98472005 -10.10462935 4.59232203 0.999975451 1.321520439 0.439705962 0.108150778 12091732.13 26605816.34 1814.536584 0.025263005 7.86E-11 10.10462935 0.321544989 (ac)S(ph)QERPTFYR ddPTM_HeLa_A486_30min_R1 1 SQERPTFYR 9 1 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;B5TY33 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 1 0 S(1)QERPTFYR 83.265 6.22E-05 1311600000 101770 101460 75213 95670 83728 79345 117830 104080 69865 72668 TRUE FALSE FALSE 94636.44854 93419.94009 104337.4879 222724.5949 73226.05351 69556.22062 88347.68772 80383.25605 75920.95445 54471.45981 1.737358405 1.715025454 1.91545239 4.088831026 1.344301287 1.276929623 1.62190784 1.475694911 1.393774918 1 15.73321291 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDR ddPTM_HeLa_A486_30min_R1 2 SQGDSNPAAIPHAAEDIQGDDR 22 0 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 0 S(0.5)QGDS(0.5)NPAAIPHAAEDIQGDDR;S(0.5)QGDS(0.5)NPAAIPHAAEDIQGDDR ; 85.493 1.36E-63 59428000 14464.9 6657.6 5494.5 0 0 10493.6 6231.5 18629.1 3969.1 11628.7 TRUE FALSE FALSE 13450.98521 6130.027529 7622.117548 0 0 9199.006323 4672.31279 14387.6606 4313.144784 8716.79783 1.543110838 0.703243054 0.874417154 0 0 1.055319454 0.536012522 1.650567202 0.4948084 1 13.08958253 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDRWMSQHNR ddPTM_HeLa_A485_30min_R1 3 SQGDSNPAAIPHAAEDIQGDDRWMSQHNR 29 1 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 0 S(0.997)QGDS(0.003)NPAAIPHAAEDIQGDDRWMSQHNR;S(1)QGDSNPAAIPHAAEDIQGDDRWMSQHNR;S(0.999)QGDS(0.001)NPAAIPHAAEDIQGDDRWMSQHNR ;; 122.04 2.46E-20 1579380000 8217.1 6033 13503 11636.4 12863.8 11910.3 16025 23600 6924.4 11678.3 TRUE FALSE FALSE 10044.96555 6738.50687 18498.32161 12272.06707 11583.0349 12533.90489 12601.12784 17812.063 8314.063566 8767.114733 1.145755001 0.76861169 2.109966867 1.399784016 1.321191208 1.429649922 1.437317546 2.031690418 0.948323801 1 13.09788641 -4.721493082 24.99999504 1.487622989 0.957182858 0.231023628 0.363918752 202.2055709 126545.6336 0.087144302 0.230555238 1.90E-05 4.721493082 -0.530440131 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDRWMSQHNR ddPTM_HeLa_A486_30min_R1 2 SQGDSNPAAIPHAAEDIQGDDRWMSQHNR 29 1 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 0 S(0.997)QGDS(0.003)NPAAIPHAAEDIQGDDRWMSQHNR;S(1)QGDSNPAAIPHAAEDIQGDDRWMSQHNR ; 146.34 2.04E-38 984450000 0 0 0 2117.3 0 0 0 3126.8 0 0 TRUE FALSE FALSE 0 0 0 4929.181402 0 0 0 2414.895898 0 0 0 (ac)S(ph)QKQEEENPAEETGEEKQDTQEK ddPTM_HeLa_A485_30min_R1 2 SQKQEEENPAEETGEEKQDTQEK 23 2 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-8 O43768-2 ENSA Alpha-endosulfine 1 0 S(1)QKQEEENPAEETGEEKQDTQEK;S(0.888)QKQEEENPAEET(0.112)GEEKQDTQEK ; 164.98 1.66E-38 2035810000 672910 355290 192735 1623220 568750 582590 1206220 939260 362060 2318880 TRUE FALSE FALSE 822596.508 396838.0749 264035.6969 1711892.398 512123.253 613093.5115 948501.2431 708905.0123 434722.121 1740825.892 0.472532326 0.227959658 0.151672662 0.983379444 0.294184074 0.352185428 0.54485704 0.407223385 0.249721769 1 20.73134049 -11.05052501 2.649484336 1.800102622 0.41213556 0.38894298 0.222092991 86582594.21 32217519.79 419634009 0.055310272 8.90E-12 11.05052501 -1.387967062 (ac)S(ph)QKQEEENPAEETGEEKQDTQEK ddPTM_HeLa_A486_30min_R1 2 SQKQEEENPAEETGEEKQDTQEK 23 2 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-8 O43768-2 ENSA Alpha-endosulfine 1 0 S(1)QKQEEENPAEETGEEKQDTQEK;S(0.941)QKQEEENPAEET(0.059)GEEKQDTQEK ; 190.67 4.09E-75 3577300000 778730 706950 255160 816040 646450 1201260 1647760 1563130 584880 2197600 TRUE FALSE FALSE 724145.0484 650928.7073 353964.7854 1899782.36 565366.2131 1053060.755 1235473.02 1207239.422 635577.8693 1647306.656 0.439593348 0.395147257 0.214874859 1.153265759 0.343206416 0.639262126 0.749995767 0.732856519 0.385828508 1 20.65167772 -13.99999875 0.063978294 2.419114097 4.31E-10 0.227478992 0.254029651 562.8983382 2.610752039 124.0697604 18.37672089 1.00E-14 13.99999875 -2.419114096 (ac)S(ph)QKQEEENPAEETGEEKQDTQEKEGILPER ddPTM_HeLa_A485_30min_R1 2 SQKQEEENPAEETGEEKQDTQEKEGILPER 30 3 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-8 O43768-2 ENSA Alpha-endosulfine 1 0 S(1)QKQEEENPAEETGEEKQDTQEKEGILPER;S(1)QKQEEENPAEETGEEKQDTQEKEGILPER ; 150.62 1.37E-63 839010000 102262 76688 51224 275360 199976 203920 433030 420790 111808 440960 TRUE FALSE FALSE 125009.8291 85655.9945 70173.88921 290402.2196 180065.6873 214596.9359 340509.603 317590.5927 134246.84 331036.7873 0.37763123 0.258750682 0.211982148 0.877250598 0.543944644 0.648257064 1.028615598 0.95938157 0.405534506 1 18.33663202 -5.258959968 24.99103996 0.773714623 0.280384262 0.577603825 0.194952768 159.6980181 1609655.312 0.054403553 0.088879755 5.51E-06 5.258959968 -0.493330361 (ac)S(ph)QKQEEENPAEETGEEKQDTQEKEGILPER ddPTM_HeLa_A486_30min_R1 2 SQKQEEENPAEETGEEKQDTQEKEGILPER 30 3 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-8 O43768-2 ENSA Alpha-endosulfine 1 0 S(1)QKQEEENPAEETGEEKQDTQEKEGILPER;S(1)QKQEEENPAEETGEEKQDTQEKEGILPER ; 117.73 1.02E-38 995990000 176670 136945 64792 251262 246802 272995 549900 474390 124839 485170 TRUE FALSE FALSE 164286.3453 126092.9795 89881.19759 584950.6341 215845.7918 239315.6525 412309.2038 366381.7529 135660.145 363680.2741 0.451732901 0.346713827 0.24714345 1.608420021 0.59350426 0.658038584 1.13371341 1.00742817 0.373020355 1 18.47231115 (ac)S(ph)QPGQKPAASPRPR ddPTM_HeLa_A486_30min_R1 3 SQPGQKPAASPRPR 14 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 S(0.998)QPGQKPAAS(0.002)PRPR;S(0.999)QPGQKPAAS(0.001)PRPR;S(1)QPGQKPAASPRPR ;; 82.515 1.46E-05 1.18E+11 547680 601160 456856 191156 678290 556560 631580 651890 487630 669510 TRUE FALSE FALSE 509290.4602 553521.8922 633762.8782 445020.8285 593212.5434 487897.2859 473552.0038 503468.8777 529898.161 501860.3382 1.014805159 1.102940101 1.262827185 0.886742376 1.182027146 0.972177414 0.943593203 1.003205154 1.05586778 1 18.93692641 -6.295781615 24.97355359 0.991958049 1.088918674 0.19543459 0.09616865 1039.698239 756061.4062 0.033243256 0.029319511 5.06E-07 6.295781615 0.096960625 (ac)S(ph)SAPTTPPSVDKVDGFSR ddPTM_HeLa_A485_30min_R1 1 SSAPTTPPSVDKVDGFSR 18 1 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 1 0 S(0.25)S(0.25)APT(0.25)T(0.25)PPS(0.001)VDKVDGFSR 44.616 0.012441 121810000 124370 123920 92155 125360 164460 110060 160770 172310 133400 158090 TRUE FALSE FALSE 152035.6774 138411.366 126246.9694 132208.0994 148085.7849 115822.5714 126420.1761 130050.7023 160172.1564 118681.0724 1.281044014 1.166246337 1.06374982 1.113977963 1.247762444 0.975914432 1.06520925 1.095799858 1.349601525 1 16.85673034 -4.349155751 3.211226166 1.115433248 1.290628315 0.186687085 0.105374294 0.480041559 7.969216667 0.026590647 0.182949294 4.48E-05 4.349155751 0.175195068 (ac)S(ph)SPASTPSR ddPTM_HeLa_A485_30min_R1 1 SSPASTPSR 9 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 S(0.625)S(0.374)PAS(0.001)TPSR 47.603 0.0050272 169950000 0 5247.5 6826.6 3995.9 2295 4282.5 4461.3 2777.1 6294.5 3722.4 TRUE FALSE FALSE 0 5861.149478 9352.043419 4214.185899 2066.501742 4506.725078 3508.10681 2096.011871 7557.748413 2794.474186 0 2.097406914 3.346620078 1.508042522 0.739495735 1.612727396 1.255372774 0.750055907 2.704533272 1 11.44836113 -5.50824822 24.79797712 1.32055673 1.940345799 0.044014076 0.924017357 1651.909299 2799900.833 0.265330742 0.377670123 3.10E-06 5.50824822 0.619789069 (ac)S(ph)SPASTPSRR ddPTM_HeLa_A485_30min_R1 4 SSPASTPSRR 10 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 S(0.5)S(0.5)PAS(0.001)TPSRR;S(0.496)S(0.496)PAS(0.007)TPSRR;S(0.499)S(0.499)PAS(0.001)TPSRR;S(0.5)S(0.5)PASTPSRR ;;; 84.498 2.00E-05 8200350000 12181.9 58991.1 16895.1 22165.4 23687.2 17015.4 17240.5 91748.8 23759.5 18270.1 TRUE FALSE FALSE 14891.72163 65889.59599 23145.30055 23376.23968 21328.8192 17906.30003 13556.92633 69247.26294 28527.81371 13715.70031 1.085742711 4.803954193 1.687504104 1.704341678 1.555065999 1.305533049 0.988423925 5.048758824 2.079938543 1 13.74354067 -8.028498969 24.00156642 0.999999883 2.303483985 0.069166373 1.389086039 5959.32097 5018879.884 1.352748537 0.34927817 9.36E-09 8.028498969 1.303484102 (ac)S(ph)SPASTPSRR ddPTM_HeLa_A486_30min_R1 4 SSPASTPSRR 10 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 S(0.499)S(0.499)PAS(0.002)TPSRR;S(0.499)S(0.499)PAS(0.002)TPSRR;S(0.5)S(0.5)PASTPSRR;S(0.496)S(0.496)PAS(0.007)TPSRR ;;; 79.906 0.000191 9944730000 50693 21058.3 71822.2 1219.6 84990.6 29632 59089.3 22094.6 52439.6 14617.3 TRUE FALSE FALSE 47139.68248 19389.56361 99633.67931 2839.290435 74330.28644 25976.30512 44304.53216 17064.1419 56985.10675 10957.03294 4.302230608 1.769599829 9.093125838 0.259129497 6.783796934 2.370742633 4.043478961 1.557368861 5.200778995 1 13.41956956 -9.414439818 0.280532991 8.18E-10 4.414539697 0.110402946 2.504399608 19.9764868 1.897781662 24.58659593 3.254932866 3.85E-10 9.414439818 4.414539697 (ac)S(ph)SPPEGK ddPTM_HeLa_A486_30min_R1 1 SSPPEGK 7 0 P51397;B4DQ75 P51397 DAP Death-associated protein 1 1 0 S(0.639)S(0.361)PPEGK 59.205 0.013092 672330000 395570 404860 257460 145610 378850 459380 482310 421820 327420 540470 TRUE FALSE FALSE 367842.5857 372777.4191 357155.407 338987.4387 331331.1004 402706.3662 361630.9366 325780.7943 355801.0292 405132.7941 0.907955591 0.920136371 0.881576145 0.836731668 0.817833326 0.994010784 0.892623214 0.804133358 0.878233099 1 18.62803535 (ac)S(ph)SPPEGKLETK ddPTM_HeLa_A485_30min_R1 1 SSPPEGKLETK 11 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 1 0 S(0.5)S(0.5)PPEGKLETK 47.261 0.033646 1251800000 268640 296320 384890 833170 1958300 857630 2184900 3267600 688600 1666400 TRUE FALSE FALSE 328398.0412 330972.0464 527276.8276 878683.9674 1763324.776 902534.1807 1718078.266 2466215.977 826795.7038 1250997.148 0.262509025 0.264566587 0.421485236 0.702386867 1.409535409 0.721451829 1.373367053 1.971400159 0.660909344 1 20.25464707 -5.473356807 1.944345212 1.232387022 0.275604015 0.543404688 0.357833014 0.250176096 1.881852722 0.115149403 0.189491305 3.36E-06 5.473356807 -0.956783007 (ac)S(ph)SPPEGKLETK ddPTM_HeLa_A486_30min_R1 2 SSPPEGKLETK 11 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 1 0 S(0.5)S(0.5)PPEGKLETK;S(0.5)S(0.5)PPEGKLETK ; 86.624 0.0025096 1394070000 754950 592500 645990 1109470 2410700 1180320 2411600 2894300 575430 1089980 TRUE FALSE FALSE 702031.9036 545548.1422 896134.6282 2582902.23 2108327.527 1034704.119 1808192.173 2235331.072 625308.7357 817041.9134 0.859236096 0.667711329 1.096803742 3.161284858 2.580439868 1.266402741 2.213095978 2.735882989 0.765332507 1 19.64005056 -5.02101119 23.5797145 2.04697044 0.793169195 0.316196696 0.734616756 374.5872934 420381.0807 0.195672704 0.344333898 9.53E-06 5.02101119 -1.253801246 (ac)S(ph)SSPVNVKK ddPTM_HeLa_A485_30min_R1 1 SSSPVNVKK 9 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.333)S(0.333)S(0.333)PVNVKK 41.652 0.023013 1.63E+11 13712000 12876000 9845700 15001000 16078000 15982000 22856000 25154000 11688000 19619000 TRUE FALSE FALSE 16762187.09 14381736.19 13488034.14 15820466.65 14477217.87 16818792.81 17972628.88 18984942.06 14033674.39 14728344.36 1.138090384 0.97646659 0.915787533 1.074151056 0.982949442 1.141933702 1.220274896 1.289007209 0.952834483 1 23.81209193 -6.270982785 23.10894558 1.145089589 1.01270779 0.169847675 0.107460076 341.4441778 826788.2488 0.037022902 0.033137651 5.36E-07 6.270982785 -0.132381799 (ac)S(ph)TKVPIYLK ddPTM_HeLa_A486_30min_R1 2 STKVPIYLK 9 1 O14613 O14613 CDC42EP2 Cdc42 effector protein 2 1 0 S(0.912)T(0.088)KVPIYLK;S(0.5)T(0.5)KVPIYLK ; 53.17 0.0014347 466130000 2611000 2651500 1281060 1179340 1801350 3018000 3622200 4850300 1570820 2216960 TRUE FALSE FALSE 2427982.383 2441385.483 1777120.74 2745563.121 1575407.886 2645669.845 2715887.248 3745992.571 1706979.942 1661818.786 1.461039196 1.469104516 1.069382989 1.652143509 0.948002213 1.592032698 1.634286043 2.254152259 1.027175741 1 20.66433164 -6.418097594 17.99932517 1.588610124 1.326461829 0.029423713 0.382177565 8.897071356 1514.347022 0.128492164 0.113318329 3.82E-07 6.418097594 -0.262148295 (ac)S(ph)TVHEILCK ddPTM_HeLa_A485_30min_R1 4 STVHEILCK 9 0 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.5)T(0.5)VHEILCK;S(0.5)T(0.5)VHEILCK;S(0.5)T(0.5)VHEILCK;S(0.5)T(0.5)VHEILCK ;;; 53.166 0.00019265 749550000 2396360 2071670 1932220 2551380 2813410 2032860 3224740 3113250 2558220 3794260 TRUE FALSE FALSE 2929422.015 2313933.785 2647028.584 2690755.429 2533297.022 2139297.406 2535747.955 2349720.556 3071631.289 2848420.81 1.028437232 0.81235672 0.929296884 0.944648143 0.889368949 0.751046825 0.890229402 0.824920443 1.078362887 1 21.44173087 -7.76514763 24.99999928 1.039181496 0.880928688 0.40743665 0.074896531 94.77225153 638882.6815 0.062415581 0.018552705 1.72E-08 7.76514763 -0.158252808 (ac)S(ph)TVHEILCK ddPTM_HeLa_A486_30min_R1 4 STVHEILCK 9 0 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.5)T(0.5)VHEILCK;S(0.5)T(0.5)VHEILCK;S(0.5)T(0.5)VHEILCK;S(0.915)T(0.085)VHEILCK ;;; 72.547 1.37E-07 626136000 1698900 2423920 1732970 902530 2742680 2537430 2949990 3223280 1695960 2023800 TRUE FALSE FALSE 1579815.883 2231839.751 2404022.395 2101135.451 2398667.5 2224387.685 2211871.3 2489409.508 1842967.178 1517027.307 1.041389219 1.471192866 1.584692894 1.385034693 1.581163034 1.466280584 1.458029984 1.640978706 1.21485432 1 20.53281562 -7.989727126 6.077707311 1.000291613 1.460240404 0.46722155 0.156292587 0.105163779 16.03523833 0.147306213 0.038227228 1.02E-08 7.989727126 0.459948792 (ac)S(ph)TVHEILCKLSLEGDHSTPPSAYGSVK ddPTM_HeLa_A485_30min_R1 1 STVHEILCKLSLEGDHSTPPSAYGSVK 27 1 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.426)T(0.426)VHEILCKLS(0.042)LEGDHS(0.049)T(0.057)PPS(0.001)AYGSVK 49.186 1.04E-09 684430000 183880 209900 151170 165070 279530 234830 395570 418900 266170 437600 TRUE FALSE FALSE 224783.4716 234445.9791 207094.0737 174087.3561 251699.0117 247125.3357 311053.238 316164.1182 319587.8775 328514.3734 0.684242425 0.713655164 0.630395777 0.529923103 0.766173513 0.752251212 0.946848184 0.962405739 0.972827685 1 18.32559697 -6.602909535 1.505625508 0.983980066 0.650366567 0.871468618 0.055958497 0.138760139 0.640981715 0.031026743 0.021295721 2.50E-07 6.602909535 -0.333613499 (ac)S(ph)VELEEALPVTTAEGMAK ddPTM_HeLa_A486_30min_R1 1 SVELEEALPVTTAEGMAK 18 0 Q92522 Q92522 H1FX Histone H1x 1 0 S(1)VELEEALPVTTAEGMAK 63.76 5.84E-08 14954000 63463 63819 48925 23917 75191 67639 75753 74803 64456 90090 TRUE FALSE FALSE 59014.57142 58761.75002 67870.07026 55679.9847 65759.84365 59294.38788 56798.79817 57771.98984 70043.09798 67530.87761 0.873890189 0.8701464 1.005022779 0.824511493 0.973774457 0.878033723 0.841078928 0.85548999 1.037201062 1 16.04325969 -7.766370644 24.99999919 1.018600597 0.891947052 0.470561844 0.05443616 112.5846832 570737.224 0.046209665 0.013412813 1.71E-08 7.766370644 -0.126653544 (ac)S(ph)YGRPPPDVEGMTSLK ddPTM_HeLa_A485_30min_R1 1 SYGRPPPDVEGMTSLK 16 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.546)Y(0.453)GRPPPDVEGMTSLK 42.843 0.019731 194950000 122040 127750 171520 185280 190110 160590 193860 151190 161490 273830 TRUE FALSE FALSE 149187.377 142689.2512 234972.3855 195401.3772 171181.9809 168998.2441 152440.2273 114110.4154 193899.5617 205569.2205 0.725728184 0.694117781 1.143032916 0.950538105 0.832721847 0.822098968 0.741551809 0.555094849 0.943232461 1 17.64926474 -6.264787432 2.604649373 0.775896565 0.882655605 0.0115213 0.162114416 0.839391114 11.3012664 0.063495739 0.058681181 5.44E-07 6.264787432 0.106759041 (ac)S(ph)YGRPPPDVEGMTSLK ddPTM_HeLa_A486_30min_R1 3 SYGRPPPDVEGMTSLK 16 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.548)Y(0.452)GRPPPDVEGMTSLK;S(0.91)Y(0.09)GRPPPDVEGMTSLK;S(0.55)Y(0.45)GRPPPDVEGMTSLK ;; 72.958 0.00027524 604980000 432722 545362 389991 181094 566770 561056 620580 629430 483175 622170 TRUE FALSE FALSE 402390.4224 502145.5289 541005.9595 421595.984 495680.4217 491838.6151 465304.3202 486122.5294 525056.998 466374.5824 0.862805216 1.076700035 1.160024538 0.903985766 1.062837557 1.054599958 0.997705145 1.042343532 1.125826788 1 18.83112964 -4.25562594 24.61745799 1.046673953 0.862805117 0.40296377 0.067301004 526.9767311 2231443.268 0.016522246 0.14106231 5.55E-05 4.25562594 -0.183868835 (ac)SAEVPEAASAEEQKEMEDKVT(ph)SPEK ddPTM_HeLa_A485_30min_R1 2 SAEVPEAASAEEQKEMEDKVTSPEK 25 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 SAEVPEAASAEEQKEMEDKVT(0.581)S(0.419)PEK;SAEVPEAASAEEQKEMEDKVT(0.558)S(0.442)PEK ; 101.37 3.69E-20 357450000 209409 96409 54332 468380 113483 165847 336900 237280 95537 581830 TRUE FALSE FALSE 255991.3096 107683.1939 74431.66774 493966.4134 102184.2341 174530.4925 264918.5628 179086.708 114710.3996 436790.4888 0.586073452 0.246532827 0.17040588 1.130900114 0.233943359 0.399574846 0.606511748 0.41000597 0.262621102 1 18.73658192 -10.46644223 3.545844926 1.007021319 0.451105372 0.276824098 0.266863404 887277908 1148703735 60927971.25 0.065565639 3.42E-11 10.46644223 -0.555915948 (ac)SAEVPEAASAEEQKEMEDKVT(ph)SPEK ddPTM_HeLa_A486_30min_R1 1 SAEVPEAASAEEQKEMEDKVTSPEK 25 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 SAEVPEAASAEEQKEMEDKVT(0.5)S(0.5)PEK 47.757 0.016023 173830000 175590 129190 16368 143150 66255 208670 284150 206170 92603 586270 TRUE FALSE FALSE 163282.0477 118952.5139 22706.12795 333260.4344 57944.6801 182926.417 213052.6646 159229.5917 100629.9026 439464.176 0.371548027 0.270676247 0.051667756 0.758333563 0.131853023 0.416248757 0.484800983 0.36232667 0.228983176 1 18.74538604 -11.02342957 2.690258617 1.758157928 0.344271223 0.529133835 0.1862506 21444709.62 7695806.239 100415352.4 0.045695633 9.47E-12 11.02342957 -1.413886705 (ac)SAEVPEAASAEEQKEMEDKVT(ph)SPEKAEEAK ddPTM_HeLa_A486_30min_R1 2 SAEVPEAASAEEQKEMEDKVTSPEKAEEAK 30 3 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 SAEVPEAAS(0.083)AEEQKEMEDKVT(0.487)S(0.43)PEKAEEAK;SAEVPEAAS(0.047)AEEQKEMEDKVT(0.476)S(0.476)PEKAEEAK ; 66.116 0.00012388 536740000 302090 235601 76585 729180 201980 510300 1112210 830270 179712 1449030 TRUE FALSE FALSE 280915.051 216931.1187 106240.763 1697567.891 176645.785 447344.3744 833923.2942 641235.6457 195289.5809 1086183.456 0.258625787 0.199718673 0.097811067 1.562874007 0.162629788 0.41184974 0.767755474 0.590356668 0.179794288 1 20.05083636 -14 0.072775257 2.345941723 5.31E-11 0.114880814 0.419531719 747.0801286 3.88926786 177.3067334 20.34247566 1.00E-14 14 -2.345941723 (ac)SAEVPEAASAEEQKEMEDKVTS(ph)PEKAEEAK ddPTM_HeLa_A486_30min_R1 1 SAEVPEAASAEEQKEMEDKVTSPEKAEEAK 30 3 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 SAEVPEAASAEEQKEMEDKVT(0.215)S(0.785)PEKAEEAK 169.03 3.41E-50 2532900000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)SAHLQWMVVR ddPTM_HeLa_A485_30min_R1 1 SAHLQWMVVR 10 0 P46779;H0YMF4;H0YKD8;P46779-4;P46779-5;P46779-2;P46779-3;H0YLP6 P46779 RPL28 60S ribosomal protein L28 0 0 40.067 0.011651 26841000 12735 9568.7 9742.8 24823 14443 14232 20140 23538 11839 25335 FALSE FALSE TRUE 15567.85681 10687.67623 13347.06715 26179.01763 13005.00421 14977.16551 15836.92447 17765.26859 14214.97871 19019.45076 0.818522943 0.56193401 0.701758811 1.376433945 0.68377391 0.787465722 0.832669916 0.934057919 0.747391651 1 14.21518796 -5.035208259 24.99945645 0.900059195 0.675632378 0.211074471 0.189400982 866.0125113 614907.4447 0.05094018 0.088282415 9.22E-06 5.035208259 -0.224426817 (ac)SASAPAAEGEGT(ph)PTQPASEKEPEMPGPR ddPTM_HeLa_A485_30min_R1 1 SASAPAAEGEGTPTQPASEKEPEMPGPR 28 1 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;D6R9L5;P35659-2 B4DFG0 DEK Protein DEK 1 0 SASAPAAEGEGT(0.842)PT(0.151)QPAS(0.007)EKEPEMPGPR 101.44 3.18E-20 127100000 46254 58781 47635 69424 91697 70606 86806 90137 58189 105060 TRUE FALSE FALSE 56543.04273 65654.92662 65257.16876 73216.45733 82567.32471 74302.82098 68259.18896 68030.75942 69866.99856 78870.47549 0.716910129 0.832439848 0.82739667 0.928312615 1.04687241 0.942086637 0.865459331 0.862563069 0.885844774 1 16.26719772 -4.664692616 1.392215328 0.927521433 0.715351324 0.569893323 0.058456196 0.544104511 1.582612352 0.019594636 0.133231228 2.16E-05 4.664692616 -0.212170108 (ac)SASAPAAEGEGT(ph)PTQPASEKEPEMPGPR ddPTM_HeLa_A486_30min_R1 1 SASAPAAEGEGTPTQPASEKEPEMPGPR 28 1 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;D6R9L5;P35659-2 B4DFG0 DEK Protein DEK 1 0 SASAPAAEGEGT(0.841)PT(0.159)QPAS(0.001)EKEPEMPGPR 98.565 1.98E-20 485520000 194550 219620 140610 85971 230220 237370 259270 273460 184000 236550 TRUE FALSE FALSE 180913.0497 202216.5114 195057.9577 200144.8327 201343.6609 208085.7028 194397.9037 211199.1276 199949.2681 177316.3403 1.020284139 1.140427955 1.100056302 1.128744437 1.135505394 1.173528071 1.096333837 1.19108666 1.127641524 1 17.43596597 -4.257419888 24.38607364 1.128288352 1.02028408 0.264520247 0.049463505 333.6326305 2024021.124 0.011270338 0.081724877 5.53E-05 4.257419888 -0.108004272 (ac)SCINLPTVLPGS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 SCINLPTVLPGSPSK 15 0 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 SCINLPT(0.001)VLPGS(0.81)PS(0.189)K;SCINLPT(0.001)VLPGS(0.798)PS(0.201)K;SCINLPT(0.002)VLPGS(0.747)PS(0.251)K;SCINLPT(0.012)VLPGS(0.791)PS(0.197)K ;;; 61.435 2.59E-25 839060000 1929130 1725920 1587260 2749270 2474980 1927290 2909540 2373870 1866220 3773530 TRUE FALSE FALSE 2358258.313 1927751.33 2174453.525 2899455.659 2228562.301 2028199.924 2287893.01 1791674.66 2240753.236 2832858.418 0.832465999 0.680496886 0.767582846 1.023508849 0.786683262 0.715955274 0.807627023 0.632461774 0.790986666 1 21.43382707 -5.990341947 24.99791109 0.765767722 0.823152186 0.003360768 0.118816134 765.3633532 1980973.415 0.037036471 0.041946379 1.02E-06 5.990341947 0.057384465 (ac)SCINLPTVLPGS(ph)PSK ddPTM_HeLa_A486_30min_R1 6 SCINLPTVLPGSPSK 15 0 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 SCINLPT(0.001)VLPGS(0.82)PS(0.179)K;SCINLPT(0.038)VLPGS(0.824)PS(0.138)K;SCINLPTVLPGS(0.854)PS(0.146)K;SCINLPTVLPGS(0.815)PS(0.185)K;SCINLPT(0.001)VLPGS(0.857)PS(0.142)K;SCINLPTVLPGS(0.795)PS(0.205)K ;;;;; 85.734 2.33E-33 1164664000 2752485 3195478 1975367 1651295 3150505 3445440 4242700 4094370 2541688 4413510 TRUE FALSE FALSE 2559550.015 2942256.686 2740282.005 3844298.212 2755339.286 3020376.643 3181131.585 3162171.33 2762003.562 3308338.369 0.773666333 0.889345755 0.828295567 1.162002729 0.832846879 0.912958805 0.961549645 0.955818595 0.834861267 1 21.65767537 -4.540058994 1.715233233 0.941672832 0.773344383 0.227548837 0.093590534 0.84972796 3.709780311 0.025788315 0.197666043 2.88E-05 4.540058994 -0.168328449 (ac)SCINLPTVLPGS(ph)PSKTR ddPTM_HeLa_A485_30min_R1 1 SCINLPTVLPGSPSKTR 17 1 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 SCINLPTVLPGS(0.448)PS(0.448)KT(0.105)R 104.21 2.61E-34 860510000 131100 336120 216440 131130 482050 455890 722800 1253000 198690 185720 TRUE FALSE FALSE 160262.7427 375426.3101 296510.1628 138293.2999 434055.4094 479759.6955 568367.8753 945699.7854 238565.2605 139423.4219 1.149467862 2.692706182 2.126688319 0.991894317 3.113217302 3.441026542 4.076559501 6.7829334 1.711084531 1 17.08911342 -5.960793788 4.421033323 3.76646429 1.837042635 0.193460065 1.524160807 0.286941418 12.63554737 0.479167124 0.535000313 1.09E-06 5.960793788 -1.929421654 (ac)SCINLPTVLPGS(ph)PSKTR ddPTM_HeLa_A486_30min_R1 2 SCINLPTVLPGSPSKTR 17 1 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 SCINLPTVLPGS(0.966)PS(0.023)KT(0.011)R;SCINLPT(0.001)VLPGS(0.78)PS(0.147)KT(0.072)R ; 87.647 3.70E-08 924740000 371190 244130 298080 267890 758740 297490 626490 735160 215900 508940 TRUE FALSE FALSE 345171.4978 224784.2497 413504.5589 623661.4584 663571.7542 260788.7085 469735.5757 567780.1164 234614.3858 381498.1114 0.904779048 0.589214581 1.083896739 1.634769452 1.739384114 0.683591087 1.231292008 1.488290766 0.614981775 1 18.54131639 -4.927327706 5.951463455 1.23161997 0.756191708 0.19554933 0.356585337 0.29954259 18.37410238 0.095087011 0.2020258 1.18E-05 4.927327706 -0.475428263 (ac)SCINLPTVLPGSPS(ph)KTR ddPTM_HeLa_A485_30min_R1 2 SCINLPTVLPGSPSKTR 17 1 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 SCINLPTVLPGS(0.421)PS(0.433)KT(0.146)R;SCINLPTVLPGS(0.356)PS(0.525)KT(0.119)R ; 73.279 1.86E-12 1120000000 107923 242690 154313 102658 352800 346590 444650 849550 137521 156956 TRUE FALSE FALSE 131930.099 271070.4844 211399.8002 108265.9466 317673.9932 364736.9165 349646.895 641196.5305 165120.2033 117829.7578 1.119667065 2.300526535 1.794112151 0.918833652 2.696042148 3.095456728 2.967390426 5.441719839 1.401345521 1 16.84634441 -5.91924378 6.016805557 3.0526503 1.612387755 0.189891467 1.178794016 0.2923603 17.01155396 0.355622013 0.404242548 1.20E-06 5.91924378 -1.440262545 (ac)SDAAVDTSSEITTK(ac)DLK ddPTM_HeLa_A485_30min_R1 2 SDAAVDTSSEITTKDLK 17 1 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 1 ; SDAAVDTSSEITTK(1)DLK;SDAAVDTSSEITTK(1)DLK 136.27 1.54E-184 546880000 611800 647580 579970 771620 819250 700830 1015910 989300 683210 1172500 FALSE TRUE FALSE 747892.7993 723308.8478 794525.0376 813771.6468 737682.5934 737524.3751 798852.5293 746672.6238 820323.9802 880217.3283 0.849668344 0.821738933 0.90264644 0.924512187 0.838068702 0.837888952 0.90756283 0.848282123 0.931956182 1 19.74750025 -8.001639906 3.588819006 0.999768347 0.867627844 0.628033767 0.032739737 0.135491189 4.51742511 0.032853655 0.008688868 9.96E-09 8.001639906 -0.132140504 (ac)SDAAVDTSSEITTK(ac)DLK ddPTM_HeLa_A486_30min_R1 2 SDAAVDTSSEITTKDLK 17 1 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 1 ; SDAAVDTSSEITTK(1)DLK;SDAAVDTSSEITTK(1)DLK 152.38 1.22E-208 733350000 1077360 1218420 822260 468650 1375360 1381940 1506460 1523220 1003390 1601130 FALSE TRUE FALSE 1001842.627 1121867.962 1140661.093 1091040.884 1202849.524 1211450.293 1129527.774 1176416.058 1090364.653 1200196.626 0.834732081 0.934736807 0.950395183 0.909051784 1.002210386 1.009376519 0.941118938 0.980186106 0.90848835 1 20.19483935 -3.085767757 0.888881494 0.966853073 1.75E-11 0.56535132 0.033985253 11.34947829 1.391573337 0.011501352 17.22527716 0.00082079 3.085767757 -0.966853073 (ac)SDEFSLADALPEHS(ph)PAK ddPTM_HeLa_A485_30min_R1 6 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 0 SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK ;;;;; 142.94 5.61E-79 15724211000 5743543 5229179 4420171 7690807 7255214 6324247 9060823 9081656 5089936 9767881 TRUE FALSE FALSE 7021174.325 5840685.996 6055376.192 8110936.312 6532859.42 6655374.794 7124904.146 6854365.627 6111439.468 7332928.031 0.957485781 0.796501203 0.825778757 1.106097902 0.890893705 0.90760127 0.971631539 0.934737883 0.833424171 1 22.80595795 (ac)SDEFSLADALPEHS(ph)PAK ddPTM_HeLa_A486_30min_R1 6 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 0 SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK;SDEFSLADALPEHS(1)PAK ;;;;; 144.5 4.25E-106 20296720000 7563650 8817710 5299850 4552620 8981380 9728070 12152290 11143680 6999250 12753460 TRUE FALSE FALSE 7033477.194 8118962.546 7352093.855 10598729.44 7854851.572 8527919.631 9111658.508 8606507.329 7605950.626 9559910.605 0.735726251 0.849271806 0.769054666 1.108664074 0.821644877 0.892050144 0.953111267 0.900270691 0.79560897 1 23.1885657 (ac)SDEREVAEAATGEDAS(ph)SPPPKTEAASDPQHPAASEGAAAAAASPPLLR ddPTM_HeLa_A485_30min_R1 1 SDEREVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLR 48 2 Q99536-3;Q99536;K7ERT7 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 1 0 S(0.035)DEREVAEAAT(0.113)GEDAS(0.372)S(0.372)PPPKT(0.083)EAAS(0.026)DPQHPAASEGAAAAAASPPLLR 66.324 5.53E-19 166290000 6668 9283.1 10058 6853.1 24368 14427 18763 27947 12598 15568 TRUE FALSE FALSE 8151.273596 10368.67779 13778.87275 7227.4675 21941.83636 15182.37541 14754.13177 21092.95443 15126.30304 11687.18411 0.697454025 0.887183576 1.178972849 0.618409656 1.877427116 1.299061885 1.262419727 1.804793544 1.294264119 1 13.51263975 -5.750585359 24.99999766 1.44900875 0.872301196 0.503544483 0.279692996 175.4998991 404225.9111 0.079639522 0.101782549 1.78E-06 5.750585359 -0.576707554 (ac)SDK(ac)PDMAEIEKFDK ddPTM_HeLa_A485_30min_R1 2 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ; SDK(1)PDMAEIEKFDK;SDK(0.999)PDMAEIEK(0.001)FDK 114.86 9.62E-16 144582000 135395 113837 98841 224180 170101 157814 309180 274680 117723 419270 FALSE TRUE FALSE 165513.1506 127149.2469 135406.399 236426.3857 153165.1472 166076.897 243121.1672 207314.2993 141348.9263 314753.7051 0.525849729 0.403964258 0.430197951 0.751147268 0.486619044 0.527640801 0.772417173 0.658655628 0.449077879 1 18.26386384 -14 0.151344548 2.538271989 0.429422955 0.547916535 0.122075739 105.2497972 0.940869317 48.89306148 0.619719002 1.00E-14 14 -2.108849034 (ac)SDK(ac)PDMAEIEKFDK ddPTM_HeLa_A486_30min_R1 1 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 SDK(1)PDMAEIEKFDK 114.82 2.02E-15 83723000 135130 135600 86569 89371 138940 187850 268650 243480 118280 346530 FALSE TRUE FALSE 125658.0848 124854.5622 120090.8352 208060.2046 121512.8496 164674.9769 201430.9285 188044.9191 128532.6056 259756.6325 0.483753133 0.480659766 0.462320573 0.800981298 0.467794984 0.6339587 0.775460194 0.723927306 0.494819341 1 17.98680106 -14 0.088915122 2.23495487 0.274414407 0.531479984 0.120994559 174.3889975 1.077688864 41.49717723 2.995135499 1.00E-14 14 -1.960540463 (ac)SDK(ac)PGMAEIEKFDK(ac)SK ddPTM_HeLa_A485_30min_R1 2 SDKPGMAEIEKFDKSK 16 3 O14604 O14604 TMSB4Y "Thymosin beta-4, Y-chromosomal" 0 2 ; SDK(1)PGMAEIEK(0.009)FDK(0.991)SK;SDK(1)PGMAEIEK(0.011)FDK(0.989)SK 71.594 0.00085711 65998000 71113 135871 129300 23898.2 176678 140194 110680 177860 159543 49864 FALSE TRUE FALSE 86931.84151 151759.9315 177133.4506 25203.69815 159087.318 147534.3411 87032.31383 134239.5561 191561.8167 37433.82248 2.322280648 4.05408589 4.731909244 0.673286789 4.249828295 3.941204272 2.324964646 3.586049921 5.117345865 1 15.19205475 -9.165504991 12.823058 1.000144827 3.428358697 0.252231021 1.262436293 0 0 1.195095029 0.289853116 6.83E-10 9.165504991 2.42821387 (ac)SDK(ac)PGMAEIEKFDK(ac)SK ddPTM_HeLa_A486_30min_R1 1 SDKPGMAEIEKFDKSK 16 3 O14604 O14604 TMSB4Y "Thymosin beta-4, Y-chromosomal" 0 2 SDK(1)PGMAEIEK(0.009)FDK(0.991)SK 72.634 0.0057877 29064000 98130 143750 161090 13446 243960 92734 65190 104680 136030 28526 FALSE TRUE FALSE 91251.59374 132358.7265 223468.3621 31302.96752 213360.262 81293.42193 48878.77249 80846.64915 147821.1899 21382.90393 4.267502396 6.189932243 10.45079578 1.463924995 9.978077005 3.80179522 2.285880938 3.780901295 6.913054954 1 14.38417017 -6.475366789 24.94431467 3.629144707 6.44676199 0.214621258 2.786936073 640.958733 336510.7535 0.943712714 0.83225426 3.35E-07 6.475366789 2.817617283 (ac)SDKPDMAEIEKFDK ddPTM_HeLa_A485_30min_R1 7 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 ;;;;;; ;;;;;; 119.87 1.22E-17 2036676000 3032128 2011319 1279405 5135720 3292134 3507775 6365880 5995490 2467779 7592160 FALSE FALSE TRUE 3706614.413 2246525.261 1752710.15 5416271.379 2964357.58 3691436.675 5005757.734 4525086.677 2963039.609 5699574.235 0.650331807 0.394156681 0.307515979 0.950294032 0.520101583 0.647668847 0.878268714 0.793934159 0.519870342 1 22.44242272 -6.061772669 0.099088825 1.27521518 1.22E-12 0.311244136 0.18546937 32.68071208 1.184323592 5.245181708 9.569729318 8.67E-07 6.061772669 -1.27521518 (ac)SDKPDMAEIEKFDK ddPTM_HeLa_A486_30min_R1 3 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 ;; ;; 109.84 1.70E-12 739340000 935481 964099 378598 697149 1142916 1328260 1792380 1660070 678663 1934490 FALSE FALSE TRUE 869908.6127 887700.2841 525201.2848 1622998.104 999560.818 1164392.786 1343907.566 1282108.3 737490.0553 1450081.113 0.599903416 0.612172848 0.362187522 1.119246427 0.689313728 0.802984589 0.92678096 0.884163161 0.508585381 1 20.46770217 -5.248146993 24.92343531 0.837352726 0.533496433 0.430970766 0.169481032 748.3140338 1403098.168 0.044605058 0.076687145 5.65E-06 5.248146993 -0.303856292 (ac)SDKPDMAEIEKFDK(ac)SK ddPTM_HeLa_A485_30min_R1 4 SDKPDMAEIEKFDKSK 16 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ;;; SDKPDMAEIEK(0.036)FDK(0.964)SK;SDKPDMAEIEK(0.039)FDK(0.961)SK;SDKPDMAEIEK(0.019)FDK(0.981)SK;SDKPDMAEIEK(0.002)FDK(0.998)SK 95.347 6.56E-11 371129000 272492 181347 114326 451346 305449 349013 622432 670234 296569 960431 FALSE TRUE FALSE 333106.9053 202553.9541 156619.9449 476001.8891 275037.4251 367286.781 489444.3184 505858.0606 356087.678 721013.2271 0.461998328 0.280929595 0.217222013 0.660184683 0.381459611 0.509403666 0.678828487 0.701593316 0.493871214 1 19.4596662 -9.851906042 0.107740739 1.730600799 5.42E-12 0.653286216 0.128600508 26.97916476 0.621412703 8.096794461 2.563792024 1.41E-10 9.851906042 -1.730600799 (ac)SDKPDMAEIEKFDK(ac)SK ddPTM_HeLa_A486_30min_R1 4 SDKPDMAEIEKFDKSK 16 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ;;; SDKPDMAEIEK(0.004)FDK(0.996)SK;SDKPDMAEIEK(0.008)FDK(0.992)SK;SDKPDMAEIEK(0.01)FDK(0.99)SK;SDKPDMAEIEK(0.005)FDK(0.995)SK 118.45 2.38E-18 447865000 713740 654344 259948 511716 727355 1062550 1384880 1311740 540631 1625080 FALSE TRUE FALSE 663710.5118 602491.3984 360606.8272 1191300.709 636123.3536 931463.3842 1038368.376 1013085.437 587493.3304 1218149.391 0.544851491 0.494595657 0.29602841 0.977959451 0.522204714 0.764654476 0.852414642 0.831659438 0.482283483 1 20.21625964 -5.254314461 24.99384287 0.761019246 0.450102237 0.442839367 0.169396909 535.7006731 1879205.357 0.044575887 0.075174888 5.57E-06 5.254314461 -0.310917009 (ac)SDQDHS(ph)MDEMTAVVK ddPTM_HeLa_A485_30min_R1 4 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 0 S(0.395)DQDHS(0.605)MDEMTAVVK;S(0.066)DQDHS(0.934)MDEMTAVVK;S(0.075)DQDHS(0.924)MDEMT(0.001)AVVK;S(0.011)DQDHS(0.989)MDEMTAVVK ;;; 88.441 1.53E-41 972360000 449696 493820 488123 412325 638461 502934 611645 695215 496167 667896 TRUE FALSE FALSE 549729.3238 551567.9533 668700.0102 434849.2707 574893.5811 529266.8466 480962.0491 524712.4312 595743.1658 501401.8189 1.096384782 1.10005176 1.333660918 0.867267039 1.146572588 1.055574245 0.959234751 1.046490881 1.188155175 1 18.9356077 -5.258795792 24.99970399 1.041573191 1.169034398 0.270546496 0.104288271 341.6640965 3231009.003 0.028223937 0.046106251 5.51E-06 5.258795792 0.127461207 (ac)SDQDHS(ph)MDEMTAVVK ddPTM_HeLa_A486_30min_R1 3 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 0 S(0.003)DQDHS(0.997)MDEMTAVVK;S(0.102)DQDHS(0.898)MDEMTAVVK;S(0.105)DQDHS(0.895)MDEMT(0.001)AVVK ;; 93.823 4.94E-16 504478000 298325 325037 264075 108415 443736 359385 440761 426189 369036 441988 TRUE FALSE FALSE 277413.9581 299279.8844 366331.9122 252395.599 388078.4932 315047.7327 330477.9359 329155.0683 401024.3376 331311.3279 0.837321077 0.903319202 1.105702948 0.761807936 1.171340852 0.950911442 0.997484565 0.993491742 1.210415412 1 18.33782801 -2.143369649 0.34317592 1.05529626 2.74E-09 0.221020655 0.118197543 43.74920901 1.277011989 0.100422407 25.72835715 0.007188369 2.143369649 -1.055296257 (ac)SDQEAKPS(ph)TEDLGDKKEGEYIK ddPTM_HeLa_A486_30min_R1 1 SDQEAKPSTEDLGDKKEGEYIK 22 3 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.454)DQEAKPS(0.496)T(0.05)EDLGDKKEGEYIK 73.696 2.27E-14 3140300000 1415800 883360 232570 1253500 982780 1531900 3057800 2750200 553310 3353100 TRUE FALSE FALSE 1316559.731 813359.3365 322627.3324 2918211.348 859510.5683 1342909.753 2292706.098 2124039.496 601271.3563 2513461.935 0.52380333 0.323601215 0.128359745 1.161032641 0.341962835 0.534286887 0.912170607 0.845065313 0.239220395 1 21.26124441 -6.291856306 0.116452912 1.186976767 2.51E-22 0.164814942 0.308287582 30.78199869 1.56934854 5.428306238 9.684817452 5.11E-07 6.291856306 -1.186976767 (ac)SDQEAKPST(ph)EDLGDKKEGEYIK ddPTM_HeLa_A485_30min_R1 2 SDQEAKPSTEDLGDKKEGEYIK 22 3 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.313)DQEAKPS(0.313)T(0.375)EDLGDKKEGEYIK;S(0.31)DQEAKPS(0.305)T(0.384)EDLGDKKEGEYIK ; 63.454 9.02E-07 3340100000 1354450 739380 352209 2350840 1591270 1766480 4164340 4606070 867900 3579350 TRUE FALSE FALSE 1655742.73 825844.0592 482505.7657 2479260.437 1432837.572 1858970.161 3274594.739 3476424.11 1042079.569 2687083.918 0.616185717 0.307338395 0.17956483 0.922658358 0.533231419 0.691816935 1.218642528 1.293753458 0.387810579 1 21.35760995 -5.932835731 1.050482418 0.975009095 0.394977728 0.346901116 0.293194361 0.556337052 1.31677499 0.142424593 0.179781946 1.17E-06 5.932835731 -0.580031367 (ac)SDSGEQNYGERES(ph)R ddPTM_HeLa_A485_30min_R1 7 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R ;;;;;; 69.258 3.77E-22 33078915000 11817.2 23071.4 36584.7 9964.4 49545.5 19798.1 19574.3 21180.9 24780.5 37980.8 TRUE FALSE FALSE 14445.89537 25769.39954 50118.90295 10508.72994 44612.57606 20834.6979 15392.0909 15986.25106 29753.71905 28512.88554 0.506644455 0.903780836 1.75776327 0.368560731 1.564646131 0.730711659 0.539829295 0.560667598 1.043518342 1 14.79932643 -6.424419079 24.13385261 0.732639464 1.031483241 0.073427211 0.421647102 78.37047253 19195.75099 0.144285161 0.127247494 3.76E-07 6.424419079 0.298843777 (ac)SDSGEQNYGERES(ph)R ddPTM_HeLa_A486_30min_R1 6 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R ;;;;; 82.925 1.26E-23 30220037000 42101.3 50583.9 70321.4 1602.3 79318.8 38986.3 30896.3 45688.6 44434.4 27405.2 TRUE FALSE FALSE 39150.21628 46575.44754 97551.72935 3730.235376 69369.89649 34176.56669 23165.71895 35286.30316 48286.00957 20542.75954 1.905791488 2.267243962 4.748715924 0.181583948 3.376853842 1.66367944 1.127682914 1.717700248 2.350512329 1 14.32634237 -6.016862781 1.045151146 1.592427224 2.63535928 0.11619095 1.1476734 1.1717025 2.737512654 0.56192332 0.649807266 9.62E-07 6.016862781 1.042932056 (ac)SDVEENNFEGRES(ph)R ddPTM_HeLa_A485_30min_R1 2 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 SDVEENNFEGRES(1)R;SDVEENNFEGRES(1)R ; 87.498 8.53E-09 2372800000 31185 61553 119995 68249 93146 42234.9 84798 79588 70800 48604 TRUE FALSE FALSE 38121.99566 68751.08791 164386.1439 71977.27005 83872.05718 44446.25406 66680.21456 60068.91821 85008.91058 36487.91729 1.044784096 1.884215187 4.505221348 1.972633008 2.298625502 1.218108825 1.827460143 1.646268756 2.329782484 1 15.15513118 -6.022887356 3.067039915 1.660900286 2.463402588 0.136560611 0.889305377 0.545200767 10.43136805 0.315212167 0.337081658 9.49E-07 6.022887356 0.802502303 (ac)SDVEENNFEGRES(ph)R ddPTM_HeLa_A486_30min_R1 2 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 SDVEENNFEGRES(1)R;SDVEENNFEGRES(1)R ; 91.441 4.58E-12 1758170000 37607 47318.3 87246 19443.2 58678 30383 38450 38123 40476 56446 TRUE FALSE FALSE 34970.9435 43568.62558 121029.9877 45264.7522 51318.05809 26634.65437 28829.40332 29443.22512 43984.49227 42311.5542 0.826510493 1.029709884 2.860447696 1.069796491 1.212861571 0.629488916 0.681360065 0.695867256 1.039538563 1 15.36876406 -5.840275571 2.391272734 0.796114934 1.541420889 0.240836278 0.534695351 0.406820906 4.754681825 0.186643553 0.225577534 1.44E-06 5.840275571 0.745305955 (ac)SEGES(ph)QTVLSSGSDPK ddPTM_HeLa_A485_30min_R1 1 SEGESQTVLSSGSDPK 16 0 F8W6G1;Q9UHY1;C9JDW7;C9JHZ6 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 0 S(0.44)EGES(0.507)QT(0.052)VLSSGSDPK 62.258 4.20E-25 230790000 209210 218990 195760 277570 307040 220010 332260 317500 224140 372420 TRUE FALSE FALSE 255748.0427 244598.9755 268179.7703 292732.9463 276470.0195 231529.3834 261269.9367 239632.6272 269122.8421 279582.5479 0.914749668 0.874872117 0.959214988 1.047035834 0.988867229 0.828125307 0.934500163 0.857108675 0.96258813 1 18.09291478 -6.169279565 24.99978633 0.908616241 0.95751894 0.089092576 0.062229018 136.7389012 37085.78859 0.021326205 0.021326205 6.77E-07 6.169279565 0.0489027 (ac)SEK(ac)SVEAAAELSAK ddPTM_HeLa_A486_30min_R1 1 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 1 SEK(1)SVEAAAELSAK 84.479 4.83E-22 26868000 15558 19122 16561 7911.6 24417 21660 23134 24709 18513 23983 FALSE TRUE FALSE 14467.46454 17606.70308 22973.86272 18418.60463 21354.39218 18987.80942 17345.62851 19083.30009 20117.72175 17977.5007 0.804753941 0.979374351 1.277923061 1.024536444 1.187839875 1.056198509 0.964852056 1.061510185 1.119049977 1 14.13390485 -4.419240033 4.057919048 1.086927087 0.815096045 0.488590252 0.08798191 0.190326356 5.087170234 0.022130446 0.105395147 3.81E-05 4.419240033 -0.271831042 (ac)SEKS(ph)VEAAAELSAK ddPTM_HeLa_A486_30min_R1 2 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(0.213)EKS(0.787)VEAAAELSAK;S(0.142)EKS(0.858)VEAAAELSAK ; 60.49 5.84E-13 142590000 197695 192153 127102 148481 267540 254930 363300 352500 164128 364310 TRUE FALSE FALSE 183837.6014 176926.0965 176319.2983 345671.2718 233982.6385 223479.3285 272398.4974 272243.445 178354.7472 273084.4047 0.673189674 0.647880631 0.645658614 1.26580378 0.856814356 0.818352585 0.997488295 0.996920514 0.653112166 1 18.0589874 (ac)SESGHS(ph)QPGLYGIER ddPTM_HeLa_A486_30min_R1 1 SESGHSQPGLYGIER 15 0 Q9H0W8-2;Q9H0W8;M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7 Q9H0W8-2 SMG9 Protein SMG9 1 0 S(0.332)ES(0.332)GHS(0.336)QPGLYGIER 55.097 1.32E-12 364220000 106720 120730 99823 94796 303400 152910 211620 223710 82759 142390 TRUE FALSE FALSE 99239.4791 111162.9151 138477.139 220689.8787 265344.7429 134045.5189 158670.4377 172776.1166 89932.61675 106734.6172 0.929777814 1.041488863 1.297396689 2.067650445 2.486023278 1.255876701 1.486588343 1.618744894 0.842581527 1 16.70366864 -7.761468242 25 0.921290513 1.539522213 0.227862317 0.44217162 1.241961677 1066087.493 0.386749228 0.124311981 1.73E-08 7.761468242 0.6182317 (ac)SESSSKS(ph)SQPLASK ddPTM_HeLa_A485_30min_R1 1 SESSSKSSQPLASK 14 1 P17096-2;A0A669KAX1;A0A1W2PRV2;P17096;P17096-3 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 S(0.064)ES(0.064)S(0.064)S(0.064)KS(0.372)S(0.372)QPLASK 47.559 4.04E-05 0 191150 209150 161580 215100 260240 314340 393780 439090 181520 379890 TRUE FALSE FALSE 233670.658 233608.2731 221355.1659 226850.3683 234329.5918 330798.3563 309645.6861 331402.489 217949.399 285190.4144 0.819349621 0.819130873 0.77616622 0.795434758 0.821660126 1.15992102 1.085750679 1.162039369 0.764224139 1 18.12156597 -6.188306295 7.62045402 1.047444744 0.803708573 0.537284885 0.105482783 0.221212282 20.65448532 0.034269803 0.034260684 6.48E-07 6.188306295 -0.243736171 (ac)SET(ph)APAAPAAAPPAEKAPVKK ddPTM_HeLa_A486_30min_R1 1 SETAPAAPAAAPPAEKAPVKK 21 2 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.456)ET(0.544)APAAPAAAPPAEKAPVKK 41.521 0.0012948 318740000 639800 506790 268010 266470 635840 472710 845910 774640 232880 864880 TRUE FALSE FALSE 594953.3239 466630.1147 371790.6496 620355.6266 556087.0182 414391.8464 634254.3709 598271.3823 253066.2259 648308.4186 0.917701062 0.719765626 0.573478053 0.956883497 0.857750728 0.639189365 0.978321973 0.922819086 0.390348511 1 19.30632078 -5.271357507 24.95368035 0.818084181 0.735259976 0.03864051 0.191111745 2665.220974 6705604.418 0.053066619 0.07976272 5.35E-06 5.271357507 -0.082824205 (ac)SET(ph)APAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_A485_30min_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 2 0 S(0.439)ET(0.562)APAAPAAPAPAEKT(1)PVK 62.064 7.49E-07 144510000 238870 212820 179460 498290 410850 247980 429780 622070 283020 1171100 TRUE FALSE FALSE 292005.8074 237707.4477 245849.722 525510.321 369944.3314 260963.8494 337953.992 469506.3571 339819.518 879166.3225 0.332139437 0.270378245 0.279639604 0.597737092 0.420789926 0.296831035 0.384402795 0.534035876 0.386524722 1 19.7457766 -14 0.240252595 4.496767162 0.329978294 0.784723131 0.09723789 80.31291 0.801709199 137.0871381 0.16241297 1.00E-14 14 -4.166788868 (ac)SETAPAAPAAAPPAEK(ac)APVK ddPTM_HeLa_A485_30min_R1 1 SETAPAAPAAAPPAEKAPVK 20 1 P16403 P16403 HIST1H1C Histone H1.2 0 1 SETAPAAPAAAPPAEK(1)APVK 48.704 9.81E-05 17764000 1765 1801.6 1582.4 1982.8 4027.9 2303.6 3107.1 4102.2 3446.7 4937.3 FALSE TRUE FALSE 2157.618161 2012.281448 2167.795609 2091.115343 3626.868133 2424.212934 2443.242702 3096.129018 4138.421075 3706.521974 0.582113954 0.542902878 0.584859775 0.564171846 0.978509815 0.654039812 0.659173942 0.835319213 1.11652409 1 11.85585035 -6.81304309 0.406326651 1.055752516 0.522406115 0.594678854 0.128382326 0.901230131 0.355212741 0.149623372 0.165959492 1.54E-07 6.81304309 -0.533346401 (ac)SETAPAAPAAPAPAEK(ac)TPVK ddPTM_HeLa_A485_30min_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 0 1 SETAPAAPAAPAPAEK(1)TPVK 82.651 2.95E-30 68110000 24674 32204 35915 33803 42147 33772 45520 80708 43741 87945 FALSE TRUE FALSE 30162.64618 35969.97766 49201.45305 35649.5723 37950.69669 35540.2497 35794.28014 60914.23645 52519.41748 66021.93001 0.456857989 0.544818633 0.745228942 0.539965619 0.574819559 0.538309766 0.542157434 0.92263641 0.795484432 1 16.01065769 -7.261179898 24.99999925 0.894295335 0.568062161 0.782585327 0.082720211 11.01289923 1061181.077 0.042081081 0.022334838 5.48E-08 7.261179898 -0.326233174 (ac)SETAPAAPAAPAPAEK(ac)TPVK ddPTM_HeLa_A486_30min_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 0 1 SETAPAAPAAPAPAEK(1)TPVK 55.213 1.26E-05 47993000 10238 15232 10910 5135.4 16410 13329 15901 14945 8866.5 13881 FALSE TRUE FALSE 9520.369069 14024.96085 15134.64418 11955.47073 14351.70478 11684.6035 11922.40162 11542.34975 9635.055359 10405.10725 0.914970777 1.347892002 1.45453995 1.14900024 1.379294268 1.122968098 1.145822079 1.109296567 0.925992892 1 13.34500422 -7.161583758 1.116737604 0.971720558 1.255819911 0.328620283 0.14532299 0.58907454 1.317400348 0.121505522 0.050435092 6.89E-08 7.161583758 0.284099353 (ac)SETAPAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_A485_30min_R1 7 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(0.999)PVK;SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK;S(0.001)ET(0.001)APAAPAAPAPAEKT(0.998)PVK;S(0.001)ET(0.001)APAAPAAPAPAEKT(0.997)PVK;S(0.004)ET(0.004)APAAPAAPAPAEKT(0.992)PVK ;;;;;; 102.33 3.45E-19 17352900000 1844440 1400608 1206926 3831820 2786041 1595174 3151887 4645600 1974145 9017150 TRUE FALSE FALSE 2254729.315 1564396.922 1653418.152 4041142.624 2508652.976 1678694.844 2478460.594 3506259.316 2370337.794 6769340.453 0.333079615 0.231100346 0.244250997 0.596977306 0.370590458 0.247984993 0.366130292 0.517961734 0.350157864 1 22.69058385 -14 0.25387181 4.972947201 0.308575423 0.760730268 0.108379432 92.91491914 0.919429854 191.7286624 0.159436908 1.00E-14 14 -4.664371778 (ac)SETAPAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_A486_30min_R1 4 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK ;;; 150.61 1.22E-72 18298300000 3147930 3808550 1642060 2088030 2818740 4171940 5953600 5055930 2181360 5475610 TRUE FALSE FALSE 2927276.363 3506746.627 2277909.608 4861039.363 2465187.345 3657248.46 4463946.309 3904805.109 2370442.041 4104481.616 0.713190273 0.854370163 0.554981072 1.184324799 0.600608695 0.891037847 1.087578585 0.951351589 0.577525316 1 21.96876859 -5.228657315 24.99795872 0.891994221 0.722199543 0.171001363 0.191887586 1315.024513 1002770.416 0.050925191 0.088197316 5.91E-06 5.228657315 -0.169794678 (ac)SETAPAAPAAPAPAEKT(ph)PVKK ddPTM_HeLa_A485_30min_R1 3 SETAPAAPAAPAPAEKTPVKK 21 2 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(0.999)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK ;; 110.01 5.94E-19 9471600000 2936870 2105370 1379030 6601070 4391390 2802720 5758900 9673300 3028950 16057900 TRUE FALSE FALSE 3590166.599 2351574.707 1889190.583 6961669.739 3954167.792 2949466.085 4528463.969 7300908.008 3636832.482 12054961.05 0.297816524 0.195071116 0.156714781 0.577494171 0.32801166 0.244668238 0.375651481 0.605635139 0.301687618 1 23.52312365 -14 0.178022145 3.684252954 0.204146157 0.705804843 0.131109818 73.23937785 0.702222134 69.29162114 0.426348896 1.00E-14 14 -3.480106797 (ac)SETAPAAPAAPAPAEKT(ph)PVKK ddPTM_HeLa_A486_30min_R1 6 SETAPAAPAAPAPAEKTPVKK 21 2 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK ;;;;; 140.57 1.90E-35 21680040000 16454250 17659060 6300013 11830060 13791730 22369450 33827740 28162760 10369120 31215660 TRUE FALSE FALSE 15300892.04 16259691.77 8739546.754 27540977.54 12061842.62 19609734.69 25363681.66 21750714.34 11267923.67 23399055.56 0.653910668 0.694886669 0.373499979 1.177012357 0.515484165 0.838056675 1.083961769 0.929555224 0.481554636 1 24.47994696 -5.245695702 24.93404038 0.851830534 0.586177896 0.255648968 0.223536041 1201.9128 1903525.915 0.059752064 0.103038046 5.68E-06 5.245695702 -0.265652638 (ac)SETAPAAPAAPAPAEKT(ph)PVKKK ddPTM_HeLa_A485_30min_R1 1 SETAPAAPAAPAPAEKTPVKKK 22 3 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVKKK 46.695 0.0004626 4696300000 2032000 3160800 1023900 1920600 4415100 5041800 9300100 28457000 2222800 6919600 TRUE FALSE FALSE 2484011.39 3530428.065 1402683.218 2025517.515 3975517.142 5305780.852 7313057.66 21477876.13 2668895.571 5194671.066 0.478184539 0.67962495 0.270023491 0.389922189 0.76530681 1.021389186 1.407799949 4.13459791 0.513775663 1 22.30860097 -6.747040921 2.631293293 2.085670466 0.537166555 0.283461717 0.908556053 0.291561941 4.128511285 0.394674253 0.267689339 1.79E-07 6.747040921 -1.548503911 (ac)SETAPAETAT(ph)PAPVEKSPAK ddPTM_HeLa_A485_30min_R1 1 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAET(0.007)AT(0.602)PAPVEKS(0.391)PAK 66.893 3.87E-06 747590000 189410 181600 151920 400690 341310 217740 364250 664880 230810 1020800 TRUE FALSE FALSE 231543.601 202836.5403 208121.5299 422578.6801 307327.978 229140.5297 286425.0119 501817.1375 277131.4499 766333.3464 0.302144755 0.264684476 0.271580939 0.551429325 0.401036937 0.299008951 0.37376034 0.654828789 0.36163303 1 19.54761256 -14 0.174769506 3.468564115 0.252539681 0.754737507 0.108677381 64.8276578 0.617529158 55.3117441 0.371469839 1.00E-14 14 -3.216024435 (ac)SETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_A485_30min_R1 9 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETAT(0.026)PAPVEKS(0.973)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETAT(0.002)PAPVEKS(0.998)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETAT(0.003)PAPVEKS(0.997)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETAT(0.022)PAPVEKS(0.978)PAK ;;;;;;;; 163.79 6.74E-59 64414430000 5433040 5085480 3862485 12544990 9232190 6019500 11193310 20237480 6494480 33206150 TRUE FALSE FALSE 6641601.004 5680182.648 5291378.933 13230291.04 8313000.747 6334671.712 8801767.878 15274206.3 7797862.565 24928467.92 0.266426361 0.227859276 0.2122625 0.530730211 0.333474194 0.254113961 0.35308098 0.612721421 0.312809539 1 24.57129088 -14 0.184187017 3.758838022 0.218387711 0.760247396 0.113730797 64.36373477 0.623930357 64.827506 0.33803317 1.00E-14 14 -3.540450311 (ac)SETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_A486_30min_R1 9 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 S(0.006)ET(0.006)APAET(0.006)AT(0.028)PAPVEKS(0.953)PAK;SETAPAETAT(0.025)PAPVEKS(0.975)PAK;SETAPAETAT(0.001)PAPVEKS(0.999)PAK;SETAPAETAT(0.037)PAPVEKS(0.963)PAK;SETAPAETAT(0.057)PAPVEKS(0.943)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETAT(0.011)PAPVEKS(0.989)PAK;SETAPAETAT(0.056)PAPVEKS(0.944)PAK;SETAPAETATPAPVEKS(1)PAK ;;;;;;;; 197.94 6.13E-102 49668450000 5680940 6131280 2831170 4628170 5408120 7536640 12459890 10390980 3320230 11070620 TRUE FALSE FALSE 5282735.442 5645415.043 3927474.845 10774613.65 4729783.161 6606845.984 9342293.735 8025180.687 3608030.21 8298464.694 0.636591904 0.680296326 0.473277286 1.298386395 0.569958822 0.79615281 1.125785802 0.967068124 0.43478286 1 22.98441302 (ac)SETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_A485_30min_R1 6 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETAT(0.016)PAPVEKS(0.983)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETAT(0.002)PAPVEKS(0.998)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK ;;;;; 191.62 2.13E-72 19417000000 2925910 2086961 1365615 7318040 4061860 2923090 6372570 11721970 3199520 22100460 TRUE FALSE FALSE 3576768.585 2331012.935 1870812.816 7717805.995 3657446.956 3076138.472 5011018.36 8847138.478 3841634.316 16591222.05 0.215581985 0.14049676 0.112759193 0.465174052 0.220444699 0.185407589 0.302028286 0.533242124 0.231546194 1 23.98391682 -14 0.196307571 4.286794405 0.145521716 0.783253682 0.118413732 61.48218456 0.605957235 78.9374273 0.297730598 1.00E-14 14 -4.141272689 (ac)SETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_A486_30min_R1 6 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK;SETAPAETATPAPVEKS(1)PAKK ;;;;; 164.83 1.15E-58 13665220000 4622660 4635020 1471910 4149900 3722860 6599630 10835660 8974840 2411880 10500010 TRUE FALSE FALSE 4298635.405 4267724.135 2041872.971 9661176.924 3255904.185 5785434.751 8124463.26 6931464.851 2620943.7 7870739.152 0.546153966 0.542226601 0.259425822 1.227480258 0.413671972 0.735056091 1.032236376 0.880662504 0.33299842 1 22.9080677 -5.229451226 24.9902872 0.788664507 0.458564614 0.268868656 0.266545573 955.0461366 746115.1069 0.070641921 0.122342255 5.90E-06 5.229451226 -0.330099893 (ac)SETAPLAPTIPAPAEKT(ph)PVK ddPTM_HeLa_A485_30min_R1 4 SETAPLAPTIPAPAEKTPVK 20 1 P16402 P16402 HIST1H1D Histone H1.3 1 0 SETAPLAPT(0.001)IPAPAEKT(0.998)PVK;S(0.003)ET(0.003)APLAPT(0.013)IPAPAEKT(0.981)PVK;S(0.003)ET(0.003)APLAPT(0.002)IPAPAEKT(0.992)PVK;SETAPLAPTIPAPAEKT(0.999)PVK ;;; 58.564 2.99E-10 0 478796 389719 324088 1055860 743330 454732 838210 1280950 522400 2276970 TRUE FALSE FALSE 585302.5184 435293.2469 443981.6376 1113538.958 669321.4552 478541.0644 659119.586 966795.004 627240.8883 1709363.284 0.34240967 0.254652274 0.259735097 0.651434934 0.391561853 0.279952816 0.385593626 0.565587791 0.366944168 1 20.70502761 -14 0.234606168 4.38282682 0.325578606 0.709671759 0.118754861 93.42273972 0.934462169 150.2143701 0.206232442 1.00E-14 14 -4.057248215 (ac)SETAPLAPTIPAPAEKT(ph)PVK ddPTM_HeLa_A486_30min_R1 2 SETAPLAPTIPAPAEKTPVK 20 1 P16402 P16402 HIST1H1D Histone H1.3 1 0 S(0.002)ET(0.002)APLAPT(0.002)IPAPAEKT(0.995)PVK;S(0.001)ET(0.001)APLAPT(0.003)IPAPAEKT(0.995)PVK ; 57.41 1.46E-07 0 409760 486500 218515 253250 377420 506300 740710 630120 245050 678630 TRUE FALSE FALSE 381037.94 447947.9682 303129.86 589578.7985 330080.4643 443837.8537 555376.5236 486655.4314 266291.1313 508696.6309 0.749047501 0.880579782 0.59589516 1.158998827 0.648874878 0.872500085 1.091763715 0.95667123 0.523477285 1 18.95644601 -5.219943804 24.99719337 0.888611632 0.755714845 0.115261401 0.190697153 1285.108942 774155.8231 0.050782738 0.087957327 6.03E-06 5.219943804 -0.132896787 (ac)SETAPLAPTIPAPAEKT(ph)PVKK ddPTM_HeLa_A485_30min_R1 2 SETAPLAPTIPAPAEKTPVKK 21 2 P16402 P16402 HIST1H1D Histone H1.3 1 0 SETAPLAPT(0.003)IPAPAEKT(0.997)PVKK;SETAPLAPTIPAPAEKT(1)PVKK ; 108.64 2.75E-26 2437000000 1191750 886760 639570 2707210 1651000 1315340 2412610 3950500 1260410 6354300 TRUE FALSE FALSE 1456850.676 990458.8682 876173.5577 2855098.027 1486620.643 1384209.168 1897136.164 2981633.681 1513362.726 4770289.952 0.305400865 0.207630747 0.183673019 0.598516664 0.311641569 0.290172963 0.397698292 0.625042442 0.317247534 1 22.18564553 -14 0.16738293 3.486368795 0.20454191 0.70077092 0.129899258 72.93357989 0.683175819 60.00114782 0.491880044 1.00E-14 14 -3.281826885 (ac)SETAPLAPTIPAPAEKT(ph)PVKK ddPTM_HeLa_A486_30min_R1 1 SETAPLAPTIPAPAEKTPVKK 21 2 P16402 P16402 HIST1H1D Histone H1.3 1 0 SETAPLAPTIPAPAEKT(1)PVKK 77.19 1.88E-09 695980000 792100 817590 262250 512450 721390 1052700 1527600 1270400 476370 1426300 TRUE FALSE FALSE 736577.8804 752801.1908 363800.2233 1193009.498 630906.5395 922828.5771 1145378.323 981157.6526 517662.1352 1069145.196 0.688940925 0.70411502 0.340272046 1.115853583 0.590103703 0.863146166 1.071302875 0.917702905 0.484183193 1 20.02802636 -5.260309418 24.99915506 0.8570472 0.590409916 0.282523616 0.207973723 142.048872 3142639.023 0.056857122 0.091805018 5.49E-06 5.260309418 -0.266637284 (ac)SGDHLHNDS(ph)QIEADFR ddPTM_HeLa_A485_30min_R1 2 SGDHLHNDSQIEADFR 16 0 P11387 P11387 TOP1 DNA topoisomerase 1 1 0 S(0.016)GDHLHNDS(0.984)QIEADFR;S(0.013)GDHLHNDS(0.987)QIEADFR ; 55.337 1.03E-13 1198440000 100642 84899 68864 171140 106528 105688 195106 175767 67074 208434 TRUE FALSE FALSE 123029.4657 94827.19953 94339.65927 180488.9449 95921.69828 111221.6603 153420.0092 132659.8677 80535.13656 156475.2397 0.786255167 0.606020478 0.602904711 1.153466485 0.613015187 0.710793992 0.980474671 0.847801019 0.514682941 1 17.25557486 -11.50109265 2.244989537 4.153476494 0.763550612 0.132547864 0.185662659 5338347.215 562466.9121 86693604.54 0.048427851 3.15E-12 11.50109265 -3.389925881 (ac)SGDHLHNDS(ph)QIEADFR ddPTM_HeLa_A486_30min_R1 1 SGDHLHNDSQIEADFR 16 0 P11387 P11387 TOP1 DNA topoisomerase 1 1 0 S(0.257)GDHLHNDS(0.743)QIEADFR 45.384 3.03E-09 0 30359 37583 23275 15736 41392 49137 59843 57439 20910 43756 TRUE FALSE FALSE 28230.99087 34604.78621 32287.70333 36634.20325 36200.22939 43074.97653 44869.64845 44361.39358 22722.49564 32799.2128 0.860721599 1.055049291 0.984404825 1.116923247 1.103692019 1.313292999 1.368009919 1.352513972 0.69277564 1 15.00137357 -5.158977922 1.240984696 1.176793489 0.930164639 0.129218348 0.192946058 0.960458552 2.745655897 0.067215018 0.200619877 6.93E-06 5.158977922 -0.24662885 (ac)SGYSS(ph)DRDR ddPTM_HeLa_A485_30min_R1 4 SGYSSDRDR 9 1 P17844;P17844-2;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8;J3QS79 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 S(0.001)GY(0.001)S(0.043)S(0.954)DRDR;SGYS(0.031)S(0.969)DRDR;SGYS(0.004)S(0.996)DRDR;SGYS(0.006)S(0.994)DRDR ;;; 62.005 0.00017618 11044191000 73826 135013 93103 18993.6 33138 93840.9 27103.9 39989 32242 23068.8 TRUE FALSE FALSE 90248.339 150801.5959 127545.674 20031.17227 29838.66437 98754.26442 21312.93035 30181.63505 38712.67366 17318.17271 5.211192919 8.70770828 7.364845944 1.156656225 1.722968402 5.702348976 1.230668541 1.742772494 2.235378657 1 14.07999909 -5.254532412 24.75805781 2.24046407 7.255895476 0.697357229 1.501122626 263.8142989 945640.7776 0.41310194 0.69541503 5.57E-06 5.254532412 5.015431406 (ac)SGYSS(ph)DRDR ddPTM_HeLa_A486_30min_R1 4 SGYSSDRDR 9 1 P17844;P17844-2;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8;J3QS79 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 S(0.003)GY(0.003)S(0.148)S(0.846)DRDR;SGYS(0.009)S(0.99)DRDR;SGYS(0.005)S(0.995)DRDR;SGYS(0.011)S(0.989)DRDR ;;; 107.95 1.93E-08 10429386000 22220.8 19943.5 32374.7 4968.8 26356.3 47823.6 12107.1 15945.2 57334 46986.1 TRUE FALSE FALSE 20663.23667 18363.10443 44911.05086 11567.61751 23050.44709 41923.61047 9077.775524 12314.82604 62303.75728 35220.47473 0.586682514 0.521375835 1.275140418 0.328434457 0.654461567 1.19031929 0.25774143 0.349649632 1.768964154 1 15.10412673 -7.757754598 24.9999973 1.384482104 0.657296275 0.393086176 0.367070603 88.440806 600074.2356 0.26557585 0.091572869 1.75E-08 7.757754598 -0.727185829 (ac)SGYSS(ph)DRDRGR ddPTM_HeLa_A485_30min_R1 1 SGYSSDRDRGR 11 2 P17844;P17844-2;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8;J3QS79 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 SGY(0.002)S(0.193)S(0.805)DRDRGR 48.527 0.015354 219360000 0 0 5144.4 0 3109.6 0 0 0 0 0 TRUE FALSE FALSE 0 0 7047.527636 0 2799.997306 0 0 0 0 0 0 (ac)SILK(ac)IHAR ddPTM_HeLa_A485_30min_R1 1 SILKIHAR 8 1 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 1 SILK(1)IHAR 84.244 4.47E-05 277190000 4457.5 4193 6631.7 3469.5 4482.4 5409.2 5455.9 6363.3 3689.2 8175.2 FALSE TRUE FALSE 5449.055497 4683.334876 9085.041798 3659.03 4036.116517 5692.417348 4290.202394 4802.690698 4429.588601 6137.273093 0.887862641 0.763097031 1.480305937 0.596198009 0.657640039 0.927515732 0.699040491 0.782544727 0.721751914 1 12.58338207 (ac)SILK(ac)IHAR ddPTM_HeLa_A486_30min_R1 2 SILKIHAR 8 1 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; SILK(1)IHAR;SILK(1)IHAR 80.462 8.07E-07 529250000 15947.8 0 0 0 13591.6 5167.9 5604.3 22932.6 13153.9 14262.3 FALSE TRUE FALSE 14829.94157 0 0 0 11886.81479 4530.337041 4202.044864 17711.3476 14294.09064 10690.92725 1.387152043 0 0 0 1.111860039 0.423755296 0.393047747 1.656670856 1.337030017 1 13.38409937 -7.252410765 24.86732143 1.372637832 0.441656146 0.415872018 0.463875112 537.2984429 1479874.75 0.224664038 0.12728144 5.59E-08 7.252410765 -0.930981686 (ac)SK(ac)SESPKEPEQLR ddPTM_HeLa_A486_30min_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 SK(1)SESPKEPEQLR 65.5 0.0077777 28456000 6983.9 8761.7 6432 4457.1 9446.1 11515 9655.8 13227 9668.7 15089 FALSE TRUE FALSE 6494.364675 8067.390982 8922.642655 10376.35405 8261.282057 10094.39638 7239.816711 10215.50084 10506.7907 11310.61619 0.574183101 0.71325831 0.788873259 0.917399537 0.730400707 0.89247095 0.640090389 0.903178101 0.928931769 1 13.46538991 -1.914703577 0.12092142 1.051798096 4.62E-19 0.497165841 0.094572438 73.06149353 0.754860567 0.721840426 12.62288826 0.012170164 1.914703577 -1.051798096 (ac)SK(ac)SESPKEPEQLRK ddPTM_HeLa_A485_30min_R1 2 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 ; SK(1)SESPKEPEQLRK;SK(0.999)SESPK(0.001)EPEQLRK 89.507 3.44E-06 40963000 13771.5 12362.8 11333.8 17255.1 20935.1 20200.3 32717.9 45193 29635.2 53010 FALSE TRUE FALSE 16834.92266 13808.52192 15526.64426 18197.70242 18850.72794 21257.95647 25727.45338 34109.34589 35582.71281 39795.58258 0.42303496 0.346986299 0.390159994 0.457279458 0.473688955 0.534178798 0.646490181 0.857113872 0.894137251 1 15.28032068 -7.08230002 0.813367453 1.004269545 0.389847871 0.984399666 0.027781874 0.070634187 0.086562622 0.025369974 0.01231277 8.27E-08 7.08230002 -0.614421674 down (ac)SK(ac)SESPKEPEQLRK ddPTM_HeLa_A486_30min_R1 2 SKSESPKEPEQLRK 14 3 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 ; SK(1)SESPKEPEQLRK;SK(1)SESPKEPEQLRK 106.17 1.37E-07 45744000 27846 32267 16326 21187 35769 39926 43242 54310 32584 62862 FALSE TRUE FALSE 25894.1392 29710.04541 22647.86443 49324.40673 31282.51849 35000.33606 32422.39423 41944.79858 35408.40736 47120.94604 0.549525028 0.630506132 0.480632634 1.046761809 0.663877131 0.742776599 0.688067557 0.890151877 0.751436682 1 15.52408088 -3.426450119 0.115062906 1.092413848 2.38E-16 0.395712108 0.136476612 60.92297206 0.88908391 1.431077666 10.49928676 0.000374585 3.426450119 -1.092413848 (ac)SKGPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A485_30min_R1 1 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 100.76 2.96E-72 44069000 24560 46447 27855 12494 46186 60951 63611 113940 29813 23231 FALSE FALSE TRUE 30023.28727 51878.57261 38159.72364 13176.51558 41587.55967 64142.30011 50019.9902 85996.03635 35796.19564 17439.93923 1.721524764 2.974699161 2.188065172 0.755536783 2.384616088 3.677896995 2.868128697 4.930982568 2.052541305 1 14.09010739 -6.009731728 24.58269245 3.136126406 1.951399721 0.139945062 1.091335073 601.0955811 1518393.246 0.337461079 0.361527548 9.78E-07 6.009731728 -1.184726685 (ac)SKGPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A486_30min_R1 1 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 72.145 1.10E-42 16646000 14057 11605 7926.5 4242.5 19883 9559.3 16059 16290 9290.8 17112 FALSE FALSE TRUE 13071.67689 10685.37754 10995.85308 9876.754404 17389.08874 8379.970758 12040.86835 12581.12261 10096.13402 12827.04382 1.019071664 0.833035085 0.857239847 0.769994594 1.355658325 0.653304914 0.938709535 0.980827912 0.787097492 1 13.6469011 -4.169806612 0.004550768 1.811715669 4.88E-05 0.002218056 0.182240309 500208.2547 345.4819154 66449.46696 71144.59676 6.76E-05 4.169806612 -1.811666831 (ac)SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR ddPTM_HeLa_A485_30min_R1 6 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR 31 1 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BR70;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;; ;;;;; 117.22 4.01E-129 2186489000 542506 676139 687194 558210 883775 738070 905513 972444 622286 847903 FALSE FALSE TRUE 663184.5881 755207.5744 941415.6571 588703.5988 795783.2579 776714.2039 712042.7502 733950.5843 747173.0923 636536.3866 1.04186438 1.186432685 1.478965974 0.92485459 1.250177169 1.220219645 1.118620656 1.153037909 1.173810497 1 19.27988346 -10.50949075 0.346963098 0.873300069 1.188240328 0.125695105 0.135734769 50.22214734 3.504842491 5.670367896 0.109975023 3.09E-11 10.50949075 0.314940259 (ac)SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR ddPTM_HeLa_A486_30min_R1 8 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR 31 1 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BR70;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;;; ;;;;;;; 130.32 3.53E-144 2380178600 643805.1 791792.4 724754.7 230718 1122496 835361.9 879784 926829 762434 769862.1 FALSE FALSE TRUE 598677.6871 729047.8866 1005399.129 537123.1638 981702.0848 732303.4421 659652.7378 715810.2692 828522.393 577083.6192 1.037419305 1.263331452 1.742207015 0.93075448 1.701143564 1.268972845 1.14307999 1.240392632 1.435705963 1 19.13842085 -10.10174169 5.208556552 0.999993479 1.311144227 0.121820756 0.247056227 1.79E-05 3.08E-06 0.228333737 0.055377905 7.91E-11 10.10174169 0.311150748 (ac)SKS(ph)ES(ph)PKEPEQLR ddPTM_HeLa_A485_30min_R1 2 SKSESPKEPEQLR 13 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 2 0 S(0.434)KS(0.602)ES(0.963)PKEPEQLR;S(0.529)KS(0.659)ES(0.811)PKEPEQLR ; 60.918 0.00014679 1181650000 1436190 1012970 828980 4695300 2166110 1414220 3213400 2505300 1238930 6500700 TRUE FALSE FALSE 1755665.511 1131428.03 1135654.199 4951792.35 1950444.483 1488266.372 2526830.839 1890871.247 1487571.887 4880195.127 0.359753138 0.231840736 0.23270672 1.014670976 0.399665266 0.304960423 0.517772502 0.387458124 0.304818117 1 22.2185074 -10.47481377 5.162148217 1.001124072 0.422059198 0.396355936 0.215737234 0.002886253 0.000293641 0.216019791 0.052300217 3.35E-11 10.47481377 -0.579064874 (ac)SKS(ph)ES(ph)PKEPEQLR ddPTM_HeLa_A486_30min_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 2 0 S(0.253)KS(0.795)ES(0.952)PKEPEQLR 65.043 1.38E-07 0 187110 188770 70491 317100 186330 282800 472700 403830 140680 611000 TRUE FALSE FALSE 173994.5552 173811.1777 97787.00301 738224.8253 162958.7539 247911.0113 354425.4603 311886.7245 152874.2557 458001.6231 0.379899429 0.379499043 0.213507984 1.611838885 0.355803879 0.541288499 0.773851974 0.680972968 0.333785402 1 18.80499319 (ac)SLYPS(ph)LEDLKVDK ddPTM_HeLa_A485_30min_R1 1 SLYPSLEDLKVDK 13 1 B4DHN5;E9PBU7;O00560-2;O00560 B4DHN5 SDCBP Syntenin-1 1 0 S(0.098)LY(0.083)PS(0.819)LEDLKVDK 51.211 0.003764 38181000 69748 53881 37153 122280 76448 59443 119360 96376 51003 168410 TRUE FALSE FALSE 85263.20197 60181.91425 50897.44077 128959.8468 68836.56869 62555.34356 93857.76092 72739.63489 61238.83427 126428.4864 0.674398661 0.476015461 0.402578898 1.020022073 0.544470401 0.494788361 0.74237827 0.575342132 0.484375286 1 16.94796204 -10.38568137 4.749634211 1.000479852 0.602903066 0.334097157 0.168729091 0.000856212 0.000110742 0.163153805 0.039523955 4.11E-11 10.38568137 -0.397576787 (ac)SLYPS(ph)LEDLKVDK ddPTM_HeLa_A486_30min_R1 1 SLYPSLEDLKVDK 13 1 B4DHN5;E9PBU7;O00560-2;O00560 B4DHN5 SDCBP Syntenin-1 1 0 S(0.094)LY(0.081)PS(0.825)LEDLKVDK 48.704 0.033477 60402000 101180 106910 46654 79442 92844 154650 179610 165160 91689 221280 TRUE FALSE FALSE 94087.80449 98438.06224 64719.67824 184944.9908 81198.63978 135570.8554 134669.6783 127556.6734 99636.67634 165870.0477 0.567238063 0.593464966 0.390183033 1.114999322 0.48953166 0.817331744 0.811898713 0.769015715 0.60069119 1 17.33969387 -4.940824086 0.077579583 1.266639598 1.20E-19 0.232691451 0.189906817 119.8087751 1.88961233 9.548538985 22.75256182 1.15E-05 4.940824086 -1.266639598 (ac)SQPGQK(ac)PAASPRPR ddPTM_HeLa_A486_30min_R1 2 SQPGQKPAASPRPR 14 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 0 1 ; SQPGQK(1)PAASPRPR;SQPGQK(1)PAASPRPR 85.958 0.00070969 20029600 648.63 933.3 1613.35 504.95 2295.1 1844.31 2668.43 2565.5 2142.99 1580.53 FALSE TRUE FALSE 603.1643865 859.341909 2238.082327 1175.549119 2007.227157 1616.777784 2000.76059 1981.391654 2328.746099 1184.755 0.50910474 0.725333009 1.889067635 0.992229717 1.694212859 1.36465158 1.688754713 1.672406239 1.965592969 1 10.21037303 -4.659534047 5.919982933 1.541703844 0.56945024 0.575392877 0.316203671 0.129743256 6.311052742 0.07715556 0.209921749 2.19E-05 4.659534047 -0.972253604 (ac)SQPGQKPAAS(ph)PR ddPTM_HeLa_A485_30min_R1 5 SQPGQKPAASPR 12 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR ;;;; 101.35 1.65E-15 2331210000 1738820 1891460 1745060 2036570 1905870 1831800 2271110 1980560 1765080 2749540 TRUE FALSE FALSE 2125614.51 2112649.793 2390630.312 2147822.662 1716114.891 1927710.215 1785868.795 1494824.555 2119315.366 2064130.28 1.029786991 1.023506033 1.158178016 1.040546076 0.831398535 0.933909179 0.865191898 0.724190992 1.026735273 1 20.9771026 -5.675796326 5.909042935 0.883725257 1.070339545 0.460041933 0.087693339 0.170755292 9.279754259 0.025418505 0.032799652 2.11E-06 5.675796326 0.186614288 (ac)SQPGQKPAAS(ph)PR ddPTM_HeLa_A486_30min_R1 6 SQPGQKPAASPR 12 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR ;;;;; 89.747 2.04E-11 4832960000 3525690 4212150 2787550 1163953 3546190 3415750 3579050 3332400 3416600 4004370 TRUE FALSE FALSE 3278557.338 3878363.894 3866964.013 2709741.407 3101393.783 2994349.494 2683533.835 2573685.266 3712753.639 3001649.688 1.092251821 1.292077456 1.288279585 0.902750717 1.033229759 0.997567939 0.89401966 0.857423595 1.236904378 1 21.51732418 -5.258494186 24.99607083 0.98116371 1.230990413 0.482744887 0.111379737 206.6879606 1754167.75 0.030087931 0.049324336 5.51E-06 5.258494186 0.249826703 (ac)SQPGQKPAAS(ph)PRPR ddPTM_HeLa_A485_30min_R1 9 SQPGQKPAASPRPR 14 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;S(0.002)QPGQKPAAS(0.998)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;S(0.001)QPGQKPAAS(0.999)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR ;;;;;;;; 117.18 2.44E-17 1.76E+11 4202040 5089260 4544570 4725950 5925770 5944480 6816850 7220660 4829880 6981470 TRUE FALSE FALSE 5136769.301 5684404.686 6225795.558 4984116.682 5335779.532 6255723.781 5360374.309 5449781.813 5799192.614 5241118.013 0.980090372 1.084578647 1.187875477 0.950964407 1.018061322 1.193585751 1.02275398 1.039812841 1.106480068 1 22.32144316 -10.45313103 2.872042504 0.99822637 1.066183559 0.060572301 0.076542284 32980165 41078776.39 479797.9617 0.019618841 3.52E-11 10.45313103 0.06795719 (ac)SQPGQKPAAS(ph)PRPR ddPTM_HeLa_A486_30min_R1 7 SQPGQKPAASPRPR 14 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR;S(0.319)QPGQKPAAS(0.681)PRPR;SQPGQKPAAS(1)PRPR;SQPGQKPAAS(1)PRPR ;;;;;; 117.07 1.78E-17 1.20E+11 3532911 4277747 3318758 1528822 4961910 3964850 4555780 4526663 3626524 4463120 TRUE FALSE FALSE 3285272.183 3938762.748 4603869.977 3559174.878 4339540.98 3475707.119 3415875.658 3496040.651 3940874.02 3345525.702 0.98198982 1.177322519 1.376127517 1.063861167 1.297117812 1.038912096 1.021028072 1.044989925 1.177953593 1 21.6738015 -6.295428564 24.98682324 1.057166793 1.183698232 0.231507191 0.111635974 953.3749342 700861.7591 0.039083502 0.034470175 5.06E-07 6.295428564 0.126531439 (ac)SQPGQKPAAS(ph)PRPRR ddPTM_HeLa_A485_30min_R1 1 SQPGQKPAASPRPRR 15 3 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PRPRR 46.964 0.018214 105710000 25270 100080 33551 11411 54576 129640 147580 514800 27899 18779 TRUE FALSE FALSE 30891.22432 111783.4854 45962.91107 12034.35404 49142.22181 136427.7499 116048.3274 388544.4928 33498.0734 14097.7409 2.191218049 7.929177178 3.260303292 0.853637056 3.485822456 9.677277437 8.231696709 27.56076279 2.376130589 1 13.78317638 -4.259712561 24.55449881 7.662310168 2.191215812 0.034422961 7.455955638 479.2257639 6813603.542 1.930613482 12.02324813 5.50E-05 4.259712561 -5.471094356 (ac)SRLS(ph)WGYR ddPTM_HeLa_A485_30min_R1 4 SRLSWGYR 8 1 Q8N1Q1 Q8N1Q1 CA13 Carbonic anhydrase 13 1 0 S(0.04)RLS(0.96)WGYR;S(0.22)RLS(0.78)WGYR;S(0.142)RLS(0.858)WGYR;S(0.118)RLS(0.882)WGYR ;;; 71.451 4.58E-05 1064730000 60963 77376 78278 62265 121041 79515 90988 102264 78934 85035 TRUE FALSE FALSE 74524.00903 86424.45012 107236.2896 65666.37929 108989.733 83678.28245 71547.6705 77183.59366 94775.32977 63837.33945 1.167404683 1.35382287 1.679836449 1.028651567 1.707303813 1.310804666 1.120780896 1.209066579 1.48463784 1 15.96211291 -6.524226601 24.9420046 1.220293403 1.39457387 0.129663481 0.22243568 97.69188829 1807697.289 0.081446888 0.063588595 2.99E-07 6.524226601 0.174280467 (ac)SRLS(ph)WGYR ddPTM_HeLa_A486_30min_R1 4 SRLSWGYR 8 1 Q8N1Q1 Q8N1Q1 CA13 Carbonic anhydrase 13 1 0 S(0.007)RLS(0.993)WGYR;S(0.007)RLS(0.993)WGYR;S(0.014)RLS(0.986)WGYR;S(0.011)RLS(0.989)WGYR ;;; 84.213 3.51E-05 1019890000 87078 89400 89925 35870.3 119229 90209 103082 103027 86277 95709 TRUE FALSE FALSE 80974.28187 82315.61841 124746.3683 83507.87118 104274.1871 79079.93076 77289.79331 79570.00116 93755.55983 71742.84344 1.128673997 1.147370448 1.738798775 1.163988869 1.453443745 1.102269257 1.077317118 1.109100188 1.306828045 1 16.13054731 -6.280570096 24.49629585 1.123310047 1.33038809 0.242380899 0.183155382 978.2708352 1252641.219 0.064587691 0.057052612 5.24E-07 6.280570096 0.207078043 (ac)SRPS(ph)STGPSANKPCSK ddPTM_HeLa_A486_30min_R1 1 SRPSSTGPSANKPCSK 16 2 O43255 O43255 SIAH2 E3 ubiquitin-protein ligase SIAH2 1 0 S(0.279)RPS(0.318)S(0.318)T(0.074)GPS(0.011)ANKPCSK 42.913 0.0056339 159640000 75771 90533 45748 42412 91559 94514 97056 96389 66344 102100 TRUE FALSE FALSE 70459.84418 83358.83536 63462.85077 98737.27938 80074.81647 82853.82363 72771.56225 74443.32886 72094.75134 76533.49544 0.920640613 1.089181082 0.829216677 1.290118514 1.046271518 1.08258251 0.950845925 0.972689519 0.942002595 1 16.22380367 -9.936317641 6.482633316 1.000000001 1.018575077 0 0.118991143 4.06E-09 5.19E-10 0.11290257 0.027382892 1.16E-10 9.936317641 0.018575076 (ac)SS(ph)PPEGK ddPTM_HeLa_A486_30min_R1 1 SSPPEGK 7 0 P51397;B4DQ75 P51397 DAP Death-associated protein 1 1 0 S(0.201)S(0.799)PPEGK 74.415 0.0058963 680940000 572560 557240 357830 209260 526580 649150 693500 623480 488850 792710 TRUE FALSE FALSE 532426.5007 513082.273 496391.359 487167.8554 460531.4262 569064.4731 519978.9649 481527.2145 531223.9116 594210.2563 0.896023748 0.863469231 0.835379992 0.819857702 0.775031096 0.957682011 0.875075715 0.810365034 0.893999903 1 19.18061398 -6.260848576 24.99952753 0.893550543 0.838221793 0.263571857 0.055697904 95.97500269 4061192.385 0.019382729 0.018281281 5.48E-07 6.260848576 -0.05532875 (ac)SS(ph)SPLSKK ddPTM_HeLa_A486_30min_R1 1 SSSPLSKK 8 1 P22314;Q5JRR9 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 S(0.06)S(0.467)S(0.467)PLS(0.007)KK 46.462 0.028899 7518700000 5305000 4697600 2346200 2455600 4980000 5418300 7015400 6865700 3087200 6781100 TRUE FALSE FALSE 4933146.895 4325345.068 3254711.473 5716760.899 4355361.963 4749845.235 5260072.719 5302529.987 3354800.982 5083068.422 0.970505703 0.850931899 0.640304478 1.124667312 0.85683717 0.934444481 1.034822332 1.043175017 0.659995244 1 22.27726822 -5.264149659 24.99985464 0.951295979 0.823615823 0.151955261 0.140654381 462.1568423 4262986.543 0.038534143 0.060191679 5.44E-06 5.264149659 -0.127680156 (ac)SS(ph)SPVK ddPTM_HeLa_A485_30min_R1 1 SSSPVK 6 0 P46821;F2Z393;P37837;E9PM01;E9PKI8 P46821;F2Z393 MAP1B;TALDO1 Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1;Transaldolase 1 0 S(0.022)S(0.489)S(0.489)PVK 56.011 0.016529 441760000 1232400 1133600 551850 2701400 661320 1126600 1401200 1448400 1173400 3151400 TRUE FALSE FALSE 1506543.128 1266164.659 756002.2794 2848970.642 595476.6588 1185587.034 1101822.173 1093177.629 1408890.617 2365813.977 0.636796951 0.535191977 0.319552715 1.204224284 0.251700541 0.501132822 0.465726462 0.462072521 0.595520455 1 21.17390521 -8.046581572 19.53106991 1.000000007 0.545759853 0.234581812 0.243929472 836.1325277 350581.9113 0.228365425 0.058963686 8.98E-09 8.046581572 -0.454240154 (ac)SSAPRS(ph)PTPRPR ddPTM_HeLa_A485_30min_R1 2 SSAPRSPTPRPR 12 2 Q9HBI1 Q9HBI1 PARVB Beta-parvin 1 0 SS(0.001)APRS(0.82)PT(0.179)PRPR;S(0.001)S(0.005)APRS(0.818)PT(0.175)PRPR ; 58.626 0.00074826 1953880000 220980 578650 695010 106496 490080 406040 328370 380490 426180 169355 TRUE FALSE FALSE 270136.2386 646318.0839 952123.1208 112313.6068 441285.9144 427299.6265 258211.067 287174.2309 511710.4168 127137.9152 2.124749632 5.083598254 7.4888999 0.883399784 3.470923002 3.360914214 2.030952501 2.258761522 4.024845113 1 16.95603481 -5.275421528 24.99995255 2.5504559 4.917534422 0.348888135 1.53801938 886.5183103 1585084.379 0.430917994 0.642754924 5.30E-06 5.275421528 2.367078522 (ac)SSAPRS(ph)PTPRPR ddPTM_HeLa_A486_30min_R1 2 SSAPRSPTPRPR 12 2 Q9HBI1 Q9HBI1 PARVB Beta-parvin 1 0 SSAPRS(0.85)PT(0.15)PRPR;SS(0.001)APRS(0.879)PT(0.12)PRPR ; 62.357 0.002013 1499220000 235820 302990 408650 45248 431890 176841 163479 204048 314100 95545 TRUE FALSE FALSE 219290.2358 278979.9689 566890.224 105339.6307 377718.329 155024.1554 122574.8251 157590.7247 341326.4409 71619.91011 3.061861366 3.895285103 7.9152602 1.470814897 5.273929113 2.164539933 1.711462984 2.200375908 4.765803816 1 16.12807309 -6.274843161 24.32526947 2.402399024 4.340711791 0.230658515 1.784535014 872.5503374 1583504.587 0.618232731 0.548491943 5.31E-07 6.274843161 1.938312766 (ac)SSDASQGVITT(ph)PPPPSMPHK ddPTM_HeLa_A485_30min_R1 1 SSDASQGVITTPPPPSMPHK 20 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 SSDASQGVIT(0.002)T(0.997)PPPPS(0.001)MPHK 105.9 4.38E-26 124230000 166650 175170 191450 242480 250130 172500 238680 194020 197030 307530 TRUE FALSE FALSE 203720.7176 195654.6077 262275.3219 255726.0684 225226.1789 181531.8333 187684.0682 146436.2908 236572.1137 230868.4307 0.882410458 0.847472334 1.13603805 1.107670146 0.975560748 0.78629994 0.81294817 0.634284603 1.02470534 1 17.81671138 -6.196384955 6.04036211 0.826560842 0.997979704 0.202133808 0.132481802 0.318156422 22.78868112 0.045050584 0.0448794 6.36E-07 6.196384955 0.171418862 (ac)SSDASQGVITT(ph)PPPPSMPHK ddPTM_HeLa_A486_30min_R1 1 SSDASQGVITTPPPPSMPHK 20 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 S(0.001)S(0.001)DAS(0.001)QGVIT(0.062)T(0.934)PPPPS(0.001)MPHK 60.062 9.97E-07 73024000 101700 116290 101470 27279 133360 121860 129290 138850 116000 119910 TRUE FALSE FALSE 94571.35518 107074.7569 140761.9015 63506.8906 116632.7453 106826.1522 96940.27451 107236.8861 126054.9734 89883.75552 1.0521518 1.191258156 1.566043838 0.706544695 1.297595373 1.18849231 1.078507167 1.193061922 1.402422192 1 16.45577278 -7.526026158 24.91850308 1.233388001 1.159402972 0.00381268 0.221920021 553.3695823 4380836.541 0.14242854 0.054506704 2.98E-08 7.526026158 -0.073985029 (ac)SSILPFT(ph)PPVVK ddPTM_HeLa_A485_30min_R1 1 SSILPFTPPVVK 12 0 K7EJX0;B7Z5N5;Q15796-2;Q15796;K7ESI8;K7EL92;K7ERC7 K7EJX0 SMAD2 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2 1 0 S(0.002)S(0.002)ILPFT(0.997)PPVVK 55.567 0.018628 39283000 39473 39420 49824 58520 56244 48663 54768 51736 52119 81840 TRUE FALSE FALSE 48253.63267 44029.82609 68255.97095 61716.79942 50644.14988 51210.91943 43066.36939 39047.66488 62578.80524 61438.79415 0.78539355 0.716645349 1.110958831 1.004524914 0.824302472 0.833527418 0.70096378 0.635553894 1.018555232 1 15.90686228 -5.970032958 24.31652778 0.808897093 0.90681255 0.031707274 0.149970171 419.6004248 340478.9153 0.04833064 0.054800962 1.07E-06 5.970032958 0.097915457 (ac)SSILPFT(ph)PPVVK ddPTM_HeLa_A486_30min_R1 2 SSILPFTPPVVK 12 0 K7EJX0;B7Z5N5;Q15796-2;Q15796;K7ESI8;K7EL92;K7ERC7 K7EJX0 SMAD2 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2 1 0 S(0.003)S(0.003)ILPFT(0.994)PPVVK;SSILPFT(1)PPVVK ; 62.924 0.0012125 144199000 106405 137236 100709 47378 134851 128908 144040 142303 112110 139272 TRUE FALSE FALSE 98946.55898 126360.9196 139706.2219 110298.3784 117936.7301 113004.6416 107999.6685 109903.7134 121827.7851 104397.3847 0.947787718 1.210383957 1.338215725 1.056524344 1.129690466 1.082447055 1.034505499 1.052743933 1.166962041 1 16.67172605 (ac)SSILPFT(ph)PPVVKR ddPTM_HeLa_A485_30min_R1 1 SSILPFTPPVVKR 13 1 K7EJX0;B7Z5N5;Q15796-2;Q15796;K7ESI8;K7EL92;K7ERC7 K7EJX0 SMAD2 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2 1 0 SSILPFT(0.999)PPVVKR 43.382 0.0078588 860780000 31826 60018 47966 30923 52822 61746 78844 103010 47249 46186 TRUE FALSE FALSE 38905.5839 67036.58301 65710.61943 32612.24519 47562.85621 64978.92508 61998.3353 77746.63599 56731.44091 34672.68019 1.122081815 1.933412204 1.895169888 0.940574683 1.371767511 1.874066981 1.788103341 2.242302457 1.636200046 1 15.08151174 -6.263701948 24.86215077 1.790776522 1.475454169 0.070498447 0.408368388 433.0332155 4758345.983 0.140914105 0.130278801 5.45E-07 6.263701948 -0.315322352 (ac)SSILPFT(ph)PPVVKR ddPTM_HeLa_A486_30min_R1 1 SSILPFTPPVVKR 13 1 K7EJX0;B7Z5N5;Q15796-2;Q15796;K7ESI8;K7EL92;K7ERC7 K7EJX0 SMAD2 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2 1 0 S(0.01)S(0.01)ILPFT(0.979)PPVVKR 55.314 0.0020758 867910000 240720 205010 177390 90003 290320 170740 253050 249850 162970 300980 TRUE FALSE FALSE 223846.7711 188764.261 246080.1587 209531.5325 253905.3585 149675.8348 189734.2135 192964.6092 177096.3708 225612.6489 0.992172966 0.836674104 1.090719691 0.928722452 1.125403915 0.663419518 0.840973298 0.855291625 0.784957633 1 17.78348843 -6.257377117 24.99969448 0.820636949 0.987621974 0.370705566 0.107547249 380.3396204 2340662.281 0.03461941 0.033417091 5.53E-07 6.257377117 0.166985025 (ac)SSS(ph)PLSK ddPTM_HeLa_A486_30min_R1 1 SSSPLSK 7 0 P22314;Q5JRR9 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 SS(0.024)S(0.951)PLS(0.024)K 52.278 0.0027775 513680000 1131900 1310100 854080 512560 1328400 1261900 1528700 1499200 1001900 1496800 TRUE FALSE FALSE 1052559.655 1206282.905 1184802.649 1193265.583 1161779.685 1106219.608 1146203.091 1157864.887 1088745.499 1121991.537 0.938117285 1.075126562 1.055981805 1.063524584 1.035462075 0.985942916 1.021579088 1.031972924 0.970368726 1 20.09763036 -6.149176062 7.164256867 1.005274297 1.039165945 0.133594178 0.03870734 0.519456007 29.58701725 0.01264053 0.012655357 7.09E-07 6.149176062 0.033891648 (ac)SSS(ph)PLSKK ddPTM_HeLa_A485_30min_R1 1 SSSPLSKK 8 1 P22314;Q5JRR9 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 S(0.009)S(0.032)S(0.954)PLS(0.005)KK 56.916 0.013843 8494900000 2512700 2503000 1696500 3028700 3067600 3056300 4722100 5126800 2101000 3697200 TRUE FALSE FALSE 3071641.446 2795704.077 2324105.947 3194150.212 2762178.973 3216323.142 3713184.759 3869444.261 2522651.428 2775556.082 1.106676052 1.007259084 0.837347861 1.15081451 0.995180386 1.158803154 1.337816513 1.394114962 0.908881447 1 21.40434541 -6.34551128 4.625585724 1.199380474 1.015929765 0.150462642 0.155104433 0.341283042 13.00709284 0.055575131 0.048932894 4.51E-07 6.34551128 -0.183450709 (ac)SSS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 SSSPVK 6 0 P46821;F2Z393;P37837;E9PM01;E9PKI8 P46821;F2Z393 MAP1B;TALDO1 Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1;Transaldolase 1 0 S(0.004)S(0.097)S(0.899)PVK 43.769 0.024818 418970000 950980 613190 457120 270830 454680 1408900 753980 596620 1233300 1504800 TRUE FALSE FALSE 884321.2129 564598.5912 634129.1061 630505.927 397649.7947 1235084.243 565326.2292 460782.6501 1340203.437 1127988.285 0.783980848 0.500535864 0.562177032 0.55896496 0.352530075 1.094944211 0.50118094 0.4084995 1.188135953 1 20.10532065 -7.76797468 24.99885003 1.094068218 0.595292439 0.488292987 0.204213205 138.1113583 528279.7099 0.178301622 0.050343475 1.71E-08 7.76797468 -0.498775779 (ac)SSS(ph)PVKR ddPTM_HeLa_A485_30min_R1 1 SSSPVKR 7 1 F2Z393;P37837;E9PM01;E9PKI8 F2Z393 TALDO1 Transaldolase 1 0 S(0.041)S(0.144)S(0.814)PVKR 66.429 0.024229 9771800000 238640 262090 240920 346190 355120 328810 426340 449870 305360 494770 TRUE FALSE FALSE 291724.6447 292739.1456 330046.3335 365101.4831 319763.0059 346025.9832 335248.9761 339538.6771 366642.9511 371432.9446 0.785403258 0.788134574 0.888575821 0.982953958 0.860890265 0.931597448 0.90258277 0.914131829 0.987104016 1 18.50274226 -2.379840849 0.385114461 0.954175378 1.39E-21 0.649697068 0.043010406 15.78568992 0.579509046 0.034189103 9.393827121 0.004170222 2.379840849 -0.954175378 (ac)SSS(ph)PVNVK ddPTM_HeLa_A486_30min_R1 1 SSSPVNVK 8 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.028)S(0.122)S(0.85)PVNVK 43.246 0.00076378 397410000 618900 745120 502630 245110 750390 697720 784190 738080 713890 799150 TRUE FALSE FALSE 575518.306 686073.9775 697261.7969 570628.4672 656269.0891 611642.4003 587977.3677 570035.2962 775770.56 599037.6384 0.960738139 1.145293607 1.163969928 0.952575315 1.09553899 1.021041686 0.981536601 0.951585109 1.295028075 1 19.19228713 -3.24043541 11.97693686 1.055935349 1.059246222 0 0.109044226 0 0 0.024003642 0 0.000574863 3.24043541 0.003310872 (ac)SSS(ph)PVNVKK ddPTM_HeLa_A485_30min_R1 1 SSSPVNVKK 9 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.023)S(0.191)S(0.786)PVNVKK 67.704 0.0076931 60082000000 14354000 13649000 10720000 16969000 16991000 18292000 25298000 28670000 13769000 23571000 TRUE FALSE FALSE 17546997.78 15245131.82 14685774.1 17895973.5 15299316.38 19249740.84 19892875.63 21638637.55 16532312 17695183.49 0.991625647 0.861541324 0.829930591 1.011347156 0.864603432 1.087852005 1.124197194 1.222854657 0.934283163 1 24.07685339 -6.2714574 23.80210283 1.090913333 0.909997974 0.447918125 0.088925913 304.6483562 723819.7512 0.030376385 0.027130171 5.35E-07 6.2714574 -0.180915358 (ac)STEAQRVDDS(ph)PSTSGGSSDGDQR ddPTM_HeLa_A486_30min_R1 1 STEAQRVDDSPSTSGGSSDGDQR 23 1 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 STEAQRVDDS(0.618)PS(0.172)T(0.172)S(0.037)GGS(0.001)SDGDQR 73.294 1.47E-06 193950000 0 0 0 0 4222.1 0 4330.8 0 0 0 TRUE FALSE FALSE 0 0 0 0 3692.524848 0 3247.188033 0 0 0 0 (ac)STGPTAAT(ph)GSNRR ddPTM_HeLa_A486_30min_R1 1 STGPTAATGSNRR 13 1 Q15836 Q15836 VAMP3 Vesicle-associated membrane protein 3 1 0 STGPTAAT(0.567)GS(0.432)NRR 49.724 0.00013612 621560000 27428 13545 28232 17205 37140 40835 27645 17042 24479 28247 TRUE FALSE FALSE 25505.43884 12471.64487 39164.18648 40054.10949 32481.55488 35797.19288 20727.9286 13161.90862 26600.85943 21173.76734 1.204577269 0.589013975 1.849656032 1.891685539 1.534047029 1.690638813 0.978943816 0.621613925 1.256312068 1 14.36999036 -6.836708564 7.55553095 0.927267832 1.46039995 0.290583975 0.378053935 0.330274476 28.29950376 0.172977922 0.116593153 1.46E-07 6.836708564 0.533132117 (ac)STVHEILCK ddPTM_HeLa_A485_30min_R1 2 STVHEILCK 9 0 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 75.38 9.53E-09 108085000 273850 328600 269350 244330 395560 340590 454340 436350 372330 530230 FALSE FALSE TRUE 334766.9877 367026.9116 368993.7736 257677.1292 356176.6575 358422.7657 357266.5474 329334.4783 447053.2158 398053.4192 0.841010205 0.922054413 0.926995614 0.647343087 0.894796126 0.900438857 0.897534176 0.827362516 1.123098545 1 18.60260253 -7.75622978 24.99990594 1.061549302 0.858725561 0.500093698 0.08171611 96.90124915 465028.658 0.059699399 0.021039539 1.75E-08 7.75622978 -0.20282374 (ac)STVHEILCKLS(ph)LEGDHS(ph)TPPSAYGSVK ddPTM_HeLa_A485_30min_R1 1 STVHEILCKLSLEGDHSTPPSAYGSVK 27 1 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 2 0 S(0.192)T(0.192)VHEILCKLS(0.585)LEGDHS(0.497)T(0.497)PPS(0.027)AY(0.008)GS(0.001)VK 44.931 1.32E-09 104190000 52934 54920 36816 65112 86494 62266 105980 114450 70296 131630 TRUE FALSE FALSE 64708.98568 61342.41626 50435.77044 68668.90369 77882.35366 65526.15148 83336.50722 86380.95805 84403.76241 98817.06347 0.654836153 0.620767447 0.510395358 0.694909374 0.788146813 0.663105634 0.843341264 0.874150223 0.854141577 1 16.59247256 -6.833540295 0.440797936 0.994441402 0.574566267 0.800133273 0.062056408 0.475842877 0.212993096 0.067662947 0.067373704 1.47E-07 6.833540295 -0.419875135 (ac)STVHEILCKLS(ph)LEGDHST(ph)PPSAYGSVK ddPTM_HeLa_A486_30min_R1 1 STVHEILCKLSLEGDHSTPPSAYGSVK 27 1 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 2 0 S(0.055)T(0.055)VHEILCKLS(0.832)LEGDHS(0.448)T(0.501)PPS(0.082)AY(0.024)GS(0.004)VK 41.468 1.74E-14 105820000 52521 77801 41580 8817.1 77812 71801 95574 97120 57904 69219 TRUE FALSE FALSE 48839.54912 71635.76541 57680.88955 20526.65439 68052.09339 62942.92264 71660.37432 75007.89611 62923.16534 51886.11186 0.941283657 1.380634679 1.111682635 0.395609801 1.31156664 1.213097694 1.381108966 1.445625687 1.212716912 1 15.66306081 (ac)STVHEILCKLS(ph)LEGDHSTPPSAYGSVK ddPTM_HeLa_A485_30min_R1 5 STVHEILCKLSLEGDHSTPPSAYGSVK 27 1 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.029)T(0.029)VHEILCKLS(0.845)LEGDHS(0.077)T(0.018)PPS(0.001)AYGSVK;S(0.008)T(0.008)VHEILCKLS(0.913)LEGDHS(0.063)T(0.005)PPS(0.001)AY(0.001)GSVK;STVHEILCKLS(1)LEGDHSTPPSAYGSVK;S(0.02)T(0.02)VHEILCKLS(0.458)LEGDHS(0.401)T(0.092)PPS(0.007)AY(0.002)GSVK;STVHEILCKLS(0.994)LEGDHS(0.001)T(0.001)PPS(0.001)AYGS(0.001)VK ;;;; 162.12 1.11E-108 2280486000 412518 484157 369566 246712 557599 786130 662995 873528 687236 512236 TRUE FALSE FALSE 504281.2059 540774.9495 506283.8423 260189.2519 502082.4857 827290.5512 521340.7021 659293.8884 825157.9615 384544.9922 1.311371143 1.406272245 1.316578951 0.676615889 1.305653424 2.151349174 1.355733952 1.714477894 2.145803425 1 18.55279288 -6.019902754 24.5912121 1.701628271 1.177352213 0.293531131 0.367711448 749.0173382 925461.2722 0.11767965 0.119282764 9.55E-07 6.019902754 -0.524276058 (ac)STVHEILCKLS(ph)LEGDHSTPPSAYGSVK ddPTM_HeLa_A486_30min_R1 4 STVHEILCKLSLEGDHSTPPSAYGSVK 27 1 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.179)T(0.179)VHEILCKLS(0.626)LEGDHS(0.008)T(0.009)PPSAYGSVK;STVHEILCKLS(0.999)LEGDHS(0.001)TPPSAYGSVK;S(0.03)T(0.03)VHEILCKLS(0.738)LEGDHS(0.166)T(0.035)PPSAYGSVK;STVHEILCKLS(0.998)LEGDHS(0.002)TPPSAYGSVK ;;; 121.83 2.13E-63 3018720000 550621 1008200 770666 70284.4 1217780 804441 640548 960683 791493 343390 TRUE FALSE FALSE 512025.3113 928306.5602 1069088.514 163625.6352 1065034.677 705197.2484 480276.1154 741956.4525 860100.2505 257402.9089 1.989197844 3.606433836 4.153366094 0.635679044 4.137617098 2.739663088 1.865853488 2.882471125 3.341455053 1 17.97366883 -10.70823453 2.843505445 0.729759737 2.825773349 0.215895744 1.038616502 79013150.59 65499915.82 151696059.7 0.257745832 1.96E-11 10.70823453 2.096013612 (ac)SY(ph)GRPPPDVEGMTSLK ddPTM_HeLa_A485_30min_R1 1 SYGRPPPDVEGMTSLK 16 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.449)Y(0.551)GRPPPDVEGMTSLK 73.848 0.00037924 101720000 108580 119900 136930 152230 155060 120380 152510 127700 128540 239830 TRUE FALSE FALSE 132733.2464 133921.262 187586.1051 160545.9394 139621.682 126682.9107 119924.9926 96381.37477 154336.799 180044.7947 0.737223459 0.743821904 1.041885745 0.891699978 0.775483024 0.703618846 0.666084197 0.535318863 0.857213335 1 17.45799636 -5.963659059 4.241394642 0.719342719 0.858477305 0.081292067 0.140523222 0.385760527 15.5381853 0.045609454 0.050782474 1.09E-06 5.963659059 0.139134587 (ac)SYGRPPPDVEGMTSLKVDNLT(ph)YRTSPDTLR ddPTM_HeLa_A485_30min_R1 1 SYGRPPPDVEGMTSLKVDNLTYRTSPDTLR 30 3 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.091)Y(0.082)GRPPPDVEGMT(0.085)S(0.085)LKVDNLT(0.275)YRT(0.203)S(0.176)PDT(0.002)LR 58.49 8.15E-15 1264600000 23735 61568 45028 19882 77759 82497 96112 168030 45219 33860 TRUE FALSE FALSE 29014.76887 68767.84203 61685.73097 20968.10332 70017.04093 86816.41536 75576.88604 126820.379 54294.03853 25419.32515 1.141445286 2.705337047 2.426725754 0.824888277 2.754480716 3.415370583 2.973205842 4.989132414 2.135935483 1 14.63363811 -5.985551142 24.11903058 3.148506932 1.875413287 0.180849636 1.084724045 225.5995855 376582.8714 0.323577601 0.366722982 1.03E-06 5.985551142 -1.273093645 (ac)SYGRPPPDVEGMTSLKVDNLT(ph)YRTSPDTLR ddPTM_HeLa_A486_30min_R1 1 SYGRPPPDVEGMTSLKVDNLTYRTSPDTLR 30 3 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.038)Y(0.034)GRPPPDVEGMT(0.005)S(0.005)LKVDNLT(0.539)Y(0.002)RT(0.31)S(0.062)PDT(0.004)LR 61.558 6.47E-15 681380000 148230 97371 119610 49063 264810 104390 184950 200880 88738 169700 TRUE FALSE FALSE 137839.8425 89654.96734 165926.1953 114221.1435 231595.0605 91511.42316 138673.5538 155144.0092 96429.88129 127206.0154 1.083595316 0.704801318 1.304389535 0.897922501 1.820629785 0.719395406 1.09014934 1.219627929 0.758060701 1 16.95680737 -7.760924657 24.9999964 0.87903036 1.101960708 0.079409925 0.30769723 36.49502532 1773336.578 0.231628021 0.075292416 1.73E-08 7.760924657 0.222930348 (ac)SYGRPPPDVEGMTSLKVDNLTYRTS(ph)PDTLR ddPTM_HeLa_A485_30min_R1 5 SYGRPPPDVEGMTSLKVDNLTYRTSPDTLR 30 3 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.001)Y(0.001)GRPPPDVEGMT(0.003)S(0.005)LKVDNLT(0.229)Y(0.004)RT(0.177)S(0.525)PDT(0.055)LR;SYGRPPPDVEGMT(0.001)S(0.001)LKVDNLT(0.031)Y(0.001)RT(0.246)S(0.656)PDT(0.064)LR;SYGRPPPDVEGMTSLKVDNLT(0.044)YRT(0.179)S(0.741)PDT(0.036)LR;SYGRPPPDVEGMT(0.003)S(0.006)LKVDNLT(0.041)Y(0.001)RT(0.106)S(0.833)PDT(0.01)LR;SYGRPPPDVEGMT(0.001)S(0.005)LKVDNLT(0.061)Y(0.001)RT(0.225)S(0.699)PDT(0.009)LR ;;;; 91.869 7.94E-21 8176860000 705265 1442750 1127488 580133 1737770 1899230 2304320 4224340 1175690 933012 TRUE FALSE FALSE 862148.7661 1611467.062 1544592.73 611824.1968 1564751.517 1998670.746 1811983.207 3188313.991 1411640.199 700429.2792 1.230886246 2.300684894 2.205208685 0.873498888 2.233989303 2.853494001 2.58696097 4.551942767 2.015392904 1 19.41787987 -6.044924598 4.764854352 2.807303868 1.716701674 0.170891745 0.923681591 0.308170648 15.88349818 0.297637937 0.307750688 9.02E-07 6.044924598 -1.090602194 (ac)SYGRPPPDVEGMTSLKVDNLTYRTS(ph)PDTLR ddPTM_HeLa_A486_30min_R1 2 SYGRPPPDVEGMTSLKVDNLTYRTSPDTLR 30 3 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 SYGRPPPDVEGMT(0.001)S(0.001)LKVDNLT(0.066)YRT(0.214)S(0.705)PDT(0.014)LR;SYGRPPPDVEGMT(0.012)S(0.011)LKVDNLT(0.039)YRT(0.14)S(0.708)PDT(0.09)LR ; 78.552 1.64E-14 6336900000 901200 652260 781920 466820 1688270 721980 1226860 1461240 553660 1051980 TRUE FALSE FALSE 838030.5338 600572.5421 1084700.365 1086780.552 1476511.434 632909.4482 919886.6516 1128547.551 601651.6946 788557.3608 1.062738839 0.761609202 1.375550364 1.37818833 1.872421091 0.802616879 1.166543738 1.431154672 0.762977717 1 19.58885618 -7.769797284 24.99950626 0.881488786 1.230313304 0.169662498 0.309587797 385.0420818 1151662.599 0.29240387 0.080483697 1.70E-08 7.769797284 0.348824518 (ac)T(ph)T(ph)SQKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_HeLa_A485_30min_R1 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 2 0 T(0.666)T(0.666)S(0.666)QKHRDFVAEPMGEKPVGS(0.001)LAGIGEVLGK;T(0.712)T(0.644)S(0.644)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ; 83.088 5.66E-07 11456240000 236578 299197 148123 224456 484400 648180 1079540 1781140 284038 396520 TRUE FALSE FALSE 289203.9599 334185.4865 202919.8616 236717.4629 436171.4352 682117.7025 848887.46 1344312.622 341041.8212 297674.8614 0.971543108 1.122652699 0.681682896 0.795221544 1.465261235 2.291485748 2.851727069 4.516043498 1.145685664 1 18.18337787 -6.193718193 2.32378935 2.657748477 0.901408892 0.340507206 0.932168444 0.296211271 3.13999463 0.342669443 0.330819443 6.40E-07 6.193718193 -1.756339585 (ac)T(ph)TS(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_HeLa_A485_30min_R1 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 2 0 T(0.559)T(0.559)S(0.88)QKHRDFVAEPMGEKPVGS(0.002)LAGIGEVLGK 48.76 7.45E-06 1437000000 130390 175880 81099 135250 305880 426610 563810 1074400 161550 219630 TRUE FALSE FALSE 159394.8057 196447.636 111100.8949 142638.365 275425.5132 448946.6399 443347.3876 810901.7154 193971.6032 164880.283 0.966730544 1.191456204 0.673827658 0.865102621 1.670457548 2.722864322 2.68890482 4.918124234 1.176439048 1 17.33105936 -6.081033599 2.540684328 2.772202368 0.926102425 0.330089793 1.022789771 0.288008086 3.658899803 0.353097503 0.365861007 8.30E-07 6.081033599 -1.846099943 (ac)T(ph)TS(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_HeLa_A486_30min_R1 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 2 0 T(0.536)T(0.536)S(0.922)QKHRDFVAEPMGEKPVGS(0.007)LAGIGEVLGK 49.709 5.98E-05 6297000000 107440 76003 75930 100650 242370 144070 272890 299010 83578 195650 TRUE FALSE FALSE 99909.01082 69980.24548 105332.1295 234318.2866 211969.6946 126296.1082 204610.0357 230931.9503 90822.60833 146657.9665 0.681238211 0.477166342 0.718216214 1.597719456 1.445333654 0.861160912 1.395151184 1.574629431 0.619281792 1 17.16209592 -5.098396132 6.174812561 1.238346846 0.583216037 0.444976758 0.302330079 0.194801773 10.13215241 0.081094988 0.143029059 7.97E-06 5.098396132 -0.655130809 (ac)TECFLPPT(ph)SSPSEHRR ddPTM_HeLa_A485_30min_R1 2 TECFLPPTSSPSEHRR 16 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 TECFLPPT(0.318)S(0.318)S(0.318)PS(0.045)EHRR;TECFLPPT(0.316)S(0.316)S(0.316)PS(0.052)EHRR ; 92.993 2.57E-06 327520000 9004.1 19462 18370.3 13300.3 21864.1 17420.8 15151.4 24519.6 14819.7 17656.6 TRUE FALSE FALSE 11007.03098 21737.9116 25166.23842 14026.86171 19687.23343 18332.92615 11914.17961 18506.12965 17793.87786 13255.13457 0.830397528 1.639961593 1.898603013 1.058220997 1.485253381 1.383081104 0.898835056 1.396148003 1.342413973 1 13.6942637 -6.557469366 24.99885427 1.185018084 1.410121739 0.107186948 0.30699855 437.7342566 316349.7594 0.117704823 0.091174116 2.77E-07 6.557469366 0.225103655 (ac)TECFLPPT(ph)SSPSEHRR ddPTM_HeLa_A486_30min_R1 2 TECFLPPTSSPSEHRR 16 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 TECFLPPT(0.312)S(0.312)S(0.312)PS(0.063)EHRR;TECFLPPT(0.305)S(0.305)S(0.305)PS(0.084)EHRR ; 72.421 8.78E-05 366410000 52306 73567 92575 20374.3 118982 54817.7 57564 57505 77157.2 37407.3 TRUE FALSE FALSE 48639.61951 67737.28299 128422.5192 47432.40006 104058.1681 48054.84952 43160.87835 44412.36683 83845.24822 28040.2686 1.734634579 2.415714484 4.57993185 1.691581516 3.711026081 1.713779929 1.539246252 1.583878081 2.990172791 1 14.77521255 -6.296707263 24.57236346 1.78777191 2.838105319 0.244655856 0.931756102 745.0749341 519117.1864 0.32154436 0.283587524 5.05E-07 6.296707263 1.050333408 (ac)TEVMMNTQPMEEIGLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TEVMMNTQPMEEIGLSPR 18 0 B5MBX5 B5MBX5 LBH 1 0 TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR ; 114.99 5.44E-69 211890000 1832.7 2455.9 2019.7 2359.2 3001.2 3288.5 3281.8 5884.6 2162.3 7465.9 TRUE FALSE FALSE 2240.377792 2743.096142 2766.871077 2488.077122 2702.38999 3460.680775 2580.61662 4441.392623 2596.253776 5604.78853 0.39972566 0.489420096 0.493661993 0.443919893 0.482157351 0.617450731 0.460430685 0.792428225 0.463220648 1 12.45244423 -14 0.148914223 2.747924426 0.366030148 0.720207683 0.095303951 65.39789588 0.579717831 33.62226399 0.455411589 1.00E-14 14 -2.381894278 (ac)TEVMMNTQPMEEIGLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 TEVMMNTQPMEEIGLSPR 18 0 B5MBX5 B5MBX5 LBH 1 0 TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR ;;; 102.57 2.98E-45 259260000 20982 19427.9 16782.7 10946.8 23946.2 24970.8 27564.2 31866.1 15924.9 25204 TRUE FALSE FALSE 19511.27015 17888.36245 23281.4109 25484.70362 20942.64431 21890.15658 20667.34562 24610.88466 17305.28315 18892.75435 1.032738255 0.94683719 1.232293104 1.348914147 1.108501382 1.158653533 1.093929727 1.302662608 0.915974602 1 14.20554543 -9.875754071 13.64656537 0.999993728 1.135685451 0.070788499 0.134248121 0 0 0.131203115 0.031821429 1.33E-10 9.875754071 0.135691723 (ac)TT(ph)S(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_HeLa_A485_30min_R1 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 2 0 T(0.64)T(0.677)S(0.677)QKHRDFVAEPMGEKPVGS(0.006)LAGIGEVLGK 43.068 0.020429 403490000 62901 88318 53108 72855 149750 198820 296120 508280 64444 110680 TRUE FALSE FALSE 76893.11044 98646.02184 72754.85921 76834.88417 134840.3642 209229.9078 232851.5429 383623.533 77377.31968 83089.51291 0.925424975 1.187225901 0.87562024 0.92472421 1.622832527 2.518126541 2.802417956 4.616990997 0.931252537 1 16.34237878 -6.103778703 2.503060765 2.643168947 0.987795515 0.2922888 0.98133868 0.312917051 3.843069016 0.343284888 0.350888751 7.87E-07 6.103778703 -1.655373432 (ac)TT(ph)S(ph)QKHRDFVAEPMGEKPVGSLAGIGEVLGK ddPTM_HeLa_A486_30min_R1 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGK 31 3 O75531 O75531 BANF1 "Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 2 0 T(0.65)T(0.665)S(0.676)QKHRDFVAEPMGEKPVGS(0.009)LAGIGEVLGK 41.097 3.34E-07 7044400000 313740 216420 166200 296280 589360 343830 665280 711980 174500 463590 TRUE FALSE FALSE 291748.4462 199270.091 230557.091 689754.8132 515436.9732 301411.7504 498819.9074 549877.6964 189625.8005 347504.0465 0.839554097 0.573432433 0.663465917 1.984882824 1.483254593 0.867361843 1.435436256 1.582363434 0.545679403 1 18.40667025 -5.125783748 19.42700104 1.296780117 0.679862244 0.320447114 0.385077567 3.53776577 532.1383933 0.103924407 0.1800041 7.49E-06 5.125783748 -0.616917873 (ac)VDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_HeLa_A485_30min_R1 9 VDYSVWDHIEVSDDEDETHPNIDTASLFR 29 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 0 VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.001)S(0.001)VWDHIEVS(0.995)DDEDET(0.003)HPNIDTASLFR;VDY(0.02)S(0.021)VWDHIEVS(0.957)DDEDET(0.002)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.005)S(0.006)VWDHIEVS(0.988)DDEDET(0.001)HPNIDTASLFR ;;;;;;;; 182.73 9.81E-128 2152186000 29109.3 39202 43531.4 42925.77 62817.1 47173.3 52247.8 53430.2 45376.54 63067.2 TRUE FALSE FALSE 35584.56336 43786.33289 59635.47635 45270.69612 56562.80896 49643.22104 41084.6307 40326.35967 54483.19536 47345.70771 0.751590061 0.924821594 1.259575139 0.956173185 1.194676597 1.048526328 0.867758297 0.851742674 1.150752581 1 15.53094602 -9.597761402 13.89864268 1 1.003533035 0 0.154654522 0 0 0.152856016 0.037073029 2.52E-10 9.597761402 0.003533035 (ac)VDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_HeLa_A486_30min_R1 13 VDYSVWDHIEVSDDEDETHPNIDTASLFR 29 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 0 VDY(0.001)S(0.001)VWDHIEVS(0.993)DDEDET(0.006)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.001)S(0.002)VWDHIEVS(0.974)DDEDET(0.02)HPNIDT(0.001)AS(0.001)LFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(0.999)DDEDET(0.001)HPNIDTASLFR;VDYSVWDHIEVS(0.998)DDEDET(0.002)HPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDYSVWDHIEVS(1)DDEDETHPNIDTASLFR;VDY(0.001)S(0.001)VWDHIEVS(0.993)DDEDET(0.005)HPNIDTASLFR;VDY(0.006)S(0.007)VWDHIEVS(0.968)DDEDET(0.019)HPNIDTASLFR;VDYSVWDHIEVS(0.999)DDEDET(0.001)HPNIDTASLFR;VDY(0.002)S(0.002)VWDHIEVS(0.996)DDEDETHPNIDTASLFR ;;;;;;;;;;;; 174.6 9.81E-128 2466141600 54045.4 75856.12 59092.71 25978.52 93417.1 56111.85 84835.8 81121.21 60960.48 72274.29 TRUE FALSE FALSE 50257.09655 69845.00479 81974.98987 60479.30744 81699.85624 49189.34045 63608.98554 62651.68135 66244.58349 54176.33736 0.927657701 1.289216071 1.513114283 1.116341753 1.5080358 0.907948799 1.174110112 1.156439959 1.22275862 1 15.72537524 -6.268090123 24.99657849 1.107145175 1.27676494 0.192812501 0.181260529 987.8308766 3712716.969 0.062329847 0.056236914 5.39E-07 6.268090123 0.169619766 AAAAAATAPPS(ph)PGPAQPGPR ddPTM_HeLa_A485_30min_R1 4 AAAAAATAPPSPGPAQPGPR 20 0 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 0 AAAAAATAPPS(1)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR ;;; 249.49 8.87E-47 8005300000 2121960 3103250 3120660 2190600 3437130 2901220 3296190 3520920 2755840 3032620 TRUE FALSE FALSE 2593982.681 3466148.093 4275121.995 2310266.931 3094917.269 3053123.393 2591932.079 2657408.849 3308911.81 2276643.645 1.13938898 1.522481615 1.877817815 1.014768796 1.359421039 1.341063367 1.138488267 1.167248487 1.453416663 1 21.11847706 -5.281882595 24.99215176 1.226226726 1.514154789 0.291874616 0.215030831 1036.104865 1266652.065 0.060288139 0.089536227 5.23E-06 5.281882595 0.287928063 AAAAAATAPPS(ph)PGPAQPGPR ddPTM_HeLa_A486_30min_R1 4 AAAAAATAPPSPGPAQPGPR 20 0 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 0 AAAAAATAPPS(1)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR;AAAAAAT(0.004)APPS(0.996)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR ;;; 250.94 4.51E-47 3896730000 1684600 1890220 1933830 594176 2197770 1555634 1846745 1954012 1724710 1785134 TRUE FALSE FALSE 1566518.239 1740432.083 2682660.766 1383271.756 1922105.193 1363715.694 1384669.868 1509126.123 1874209.251 1338124.827 1.170681694 1.30065002 2.004791116 1.033738952 1.436416958 1.019124424 1.034783781 1.127791737 1.400623629 1 20.35178127 AAAAALSGS(ph)PPQTEKPTHYR ddPTM_HeLa_A485_30min_R1 2 AAAAALSGSPPQTEKPTHYR 20 1 E9PDK2;A0A0A0MRZ1;Q9H9P5-5;Q9H9P5;Q9H9P5-6 E9PDK2 UNKL Putative E3 ubiquitin-protein ligase UNKL 1 0 AAAAALS(0.01)GS(0.99)PPQTEKPTHYR;AAAAALS(0.015)GS(0.984)PPQT(0.001)EKPTHYR ; 143.05 1.45E-09 950390000 481550 813170 762760 511620 833430 778110 811940 924310 694060 741290 TRUE FALSE FALSE 588669.1362 908263.1579 1044936.665 539568.5051 750450.7828 818850.6364 638462.3861 697621.5232 833351.4757 556500.0454 1.057806088 1.632098982 1.877693764 0.969574952 1.348518817 1.471429595 1.147281822 1.25358754 1.497486806 1 19.08602228 -13.22545247 0.154791925 3.69E-17 1.478616215 0.137460746 0.26129378 202.9074065 2.288003113 64.5880815 1.283924351 5.95E-14 13.22545247 1.478616215 AAAAALSGS(ph)PPQTEKPTHYR ddPTM_HeLa_A486_30min_R1 2 AAAAALSGSPPQTEKPTHYR 20 1 E9PDK2;A0A0A0MRZ1;Q9H9P5-5;Q9H9P5;Q9H9P5-6 E9PDK2 UNKL Putative E3 ubiquitin-protein ligase UNKL 1 0 AAAAALSGS(1)PPQTEKPTHYR;AAAAALSGS(1)PPQTEKPTHYR ; 244.78 1.37E-46 1007000000 820270 881150 661400 282190 978280 828440 950870 972370 709810 963410 TRUE FALSE FALSE 762773.3089 811324.4649 917511.7929 656952.5811 855575.0003 726235.4958 712952.2687 750982.5777 771336.9023 722165.8653 1.056230079 1.123460003 1.270500085 0.909697637 1.184734756 1.005635313 0.987241717 1.039903177 1.068088288 1 19.4619707 -5.261231675 24.99999999 1.033475737 1.147403042 0.31538732 0.082165458 23.95005978 2882514.018 0.02225564 0.035664735 5.48E-06 5.261231675 0.113927304 AAAFMGT(ph)PQNQTHQQPHVLR ddPTM_HeLa_A485_30min_R1 2 AAAFMGTPQNQTHQQPHVLR 20 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 AAAFMGT(1)PQNQTHQQPHVLR;AAAFMGT(1)PQNQTHQQPHVLR ; 181.81 1.23E-18 504180000 83989 110502 111076 75593 128950 104456 119030 130815 102367 109158 TRUE FALSE FALSE 102672.0633 123424.2477 152167.6347 79722.45418 116111.2852 109925.1546 93598.26811 98732.41614 122911.1179 81946.9195 1.25290937 1.506148717 1.856904879 0.972854802 1.416908481 1.341418998 1.142181655 1.204833772 1.499886984 1 16.3224021 -5.26757342 24.99979054 1.243316552 1.53540376 0.319644829 0.208247531 610.7034391 2488971.594 0.057510358 0.087790766 5.40E-06 5.26757342 0.292087208 AAAFMGT(ph)PQNQTHQQPHVLR ddPTM_HeLa_A486_30min_R1 1 AAAFMGTPQNQTHQQPHVLR 20 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 AAAFMGT(1)PQNQTHQQPHVLR 204.65 4.18E-26 198990000 59983 61718 59888 16896 72681 62300 72728 71090 54560 59933 TRUE FALSE FALSE 55778.50145 56827.24091 83078.23746 39334.74188 63564.67126 54614.05942 54530.68516 54904.35888 59289.30473 44925.3867 1.241580887 1.264924914 1.849249245 0.875557113 1.414894249 1.215661421 1.213805582 1.222123234 1.319728311 1 15.4552433 -13.99999958 0.116044825 0.051969774 1.443407401 0.139768181 0.226435609 315.6235975 2.395029516 70.44102039 2.365081995 1.00E-14 13.99999958 1.391437627 AAAGEEETAAAGS(ph)PGRK ddPTM_HeLa_A486_30min_R1 1 AAAGEEETAAAGSPGRK 17 1 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 AAAGEEETAAAGS(1)PGRK 145.54 4.26E-08 253130000 267400 234880 125880 113100 207650 283430 283390 262310 186130 342920 TRUE FALSE FALSE 248656.6409 216267.2534 174624.1072 263302.5158 181604.6007 248463.2883 212482.8246 202587.7392 202263.8983 257050.6 0.96734511 0.841341173 0.679337481 1.024321732 0.706493588 0.966592913 0.826618668 0.788123969 0.786864136 1 17.97169285 -4.262697905 8.450630652 0.839028221 0.968113677 0.091514243 0.111827331 0.18787221 213.3482228 0.025767792 0.143342044 5.46E-05 4.262697905 0.129085456 AAAGPLDMSLPST(ph)PDIK ddPTM_HeLa_A485_30min_R1 2 AAAGPLDMSLPSTPDIK 17 0 P17544;K7ELQ4;P17544-2;P17544-4 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 AAAGPLDMSLPS(0.136)T(0.864)PDIK;AAAGPLDMSLPS(0.087)T(0.913)PDIK ; 167.61 2.53E-11 80168000 202397 187800 155835 264328 227073 175827 238163 230987 150155 282957 TRUE FALSE FALSE 247419.5144 209761.5764 213484.8513 278767.5693 204464.8148 185033.0298 187277.5294 174337.0761 180289.7312 212421.0273 1.164759993 0.987480284 1.005008092 1.312335096 0.96254508 0.87106739 0.881633668 0.820714777 0.848737686 1 17.69656706 -5.990980047 24.98841587 0.877912285 1.104757465 0.573528287 0.094594648 148.8410919 412338.6553 0.029586861 0.033502262 1.02E-06 5.990980047 0.22684518 AAAGVGGS(ph)LR ddPTM_HeLa_A485_30min_R1 1 AAAGVGGSLR 10 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 0 AAAGVGGS(1)LR 102.53 0.0013091 255770000 253240 340840 312170 250600 339640 270240 330970 378210 233700 313480 TRUE FALSE FALSE 309572.3643 380698.2731 427654.6735 264289.6434 305824.2491 284389.3485 260255.5557 285453.4045 280601.4464 235335.2052 1.315452841 1.617685177 1.817215037 1.123034878 1.299526133 1.20844371 1.105892999 1.212965159 1.192347937 1 17.84435763 -5.277507808 24.85989651 1.177227499 1.58687444 0.666917259 0.135848478 431.332917 667325.818 0.038145977 0.056781666 5.28E-06 5.277507808 0.409646941 AAAGVGGS(ph)LR ddPTM_HeLa_A486_30min_R1 1 AAAGVGGSLR 10 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 0 AAAGVGGS(1)LR 96.171 0.00093436 0 314510 329620 273070 109120 340050 304970 338320 340480 259810 339060 TRUE FALSE FALSE 292464.4731 303499.7107 378810.0171 254036.8746 297397.7582 267345.9021 253668.7576 262960.1366 282330.54 254157.1691 1.150722894 1.194141845 1.490455762 0.999526693 1.170133265 1.051892036 0.998078309 1.034635921 1.110850192 1 17.9553614 -5.296595064 24.96210338 1.056253682 1.270010514 0.530724263 0.097357202 463.6357365 329201.052 0.02746722 0.04074246 5.05E-06 5.296595064 0.213756832 AAAIGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A485_30min_R1 2 AAAIGIDLGTTYSCVGVFQHGK 22 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 281.3 9.05E-65 220538000 201902 195116 176467 180716 265620 199572 257094 286578 169106 257914 FALSE FALSE TRUE 246814.4033 217933.1189 241749.4867 190588.0575 239173.9402 210021.2813 202163.7666 216294.2962 203044.0231 193620.7864 1.274730921 1.125566748 1.24857197 0.98433676 1.235269956 1.084704206 1.044122227 1.117102664 1.048668518 1 17.56287432 -1 0.174346055 1.002522253 1.972124684 0.432819603 0.074766613 57.76645957 0.635752419 0.173873552 14.71432409 0.1 1 0.969602431 AAAIGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A486_30min_R1 2 AAAIGIDLGTTYSCVGVFQHGK 22 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 304.77 3.02E-92 238151000 279073 293502 237502 128676 345167 307706 357765 315716 275656 329371 FALSE FALSE TRUE 259511.4238 270243.8326 329469.1349 299564.2309 301872.9363 269744.3622 268248.4129 243834.3588 299550.084 246894.3578 1.051103096 1.094572736 1.334453885 1.213329594 1.222680579 1.092549723 1.086490657 0.987606039 1.213272295 1 17.91353434 -6.373118228 4.952838166 1.073350589 1.18808783 0.257130366 0.091303961 0.337690732 12.5522663 0.033963039 0.029749627 4.24E-07 6.373118228 0.114737241 AAALVLQTIWGYK ddPTM_HeLa_A485_30min_R1 1 AAALVLQTIWGYK 13 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28 O60716-5 CTNND1 Catenin delta-1 0 0 232.14 2.62E-30 0 4579.2 4850.7 3811.8 4696.5 4845.7 5039.1 5100.5 5914.5 2999.9 6471.8 FALSE FALSE TRUE 5597.827242 5417.94717 5221.943442 4953.057903 4363.245094 5302.939484 4010.736508 4463.959601 3601.952413 4858.499365 1.152172064 1.115148272 1.07480583 1.019462499 0.898064354 1.09147683 0.82550932 0.918793905 0.741371387 1 12.24629506 -5.427875455 0.586885274 0.872505811 1.186521271 0.540904878 0.086350665 0.945568959 0.580839864 0.05575746 0.17250879 3.73E-06 5.427875455 0.31401546 AAAPPQPS(ph)PPPTK ddPTM_HeLa_A485_30min_R1 1 AAAPPQPSPPPTK 13 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 0 AAAPPQPS(0.997)PPPT(0.003)K 84.173 0.0021622 0 145530 134800 91699 161550 178280 167280 243770 242820 142300 236210 TRUE FALSE FALSE 177902.6464 150563.6874 125622.276 170375.0674 160529.8172 176038.5221 191686.5481 183268.0143 170858.3047 177327.1941 1.003245144 0.849072745 0.708420819 0.960794921 0.90527467 0.992732801 1.080976604 1.033502025 0.963520038 1 17.43605427 -6.058584646 1.679073862 1.023054763 0.861593762 0.413015238 0.077428279 0.353136787 2.003484104 0.031698278 0.033559122 8.74E-07 6.058584646 -0.161461002 AAAS(ph)PPTPIR ddPTM_HeLa_A485_30min_R1 1 AAASPPTPIR 10 0 Q5T2Z1;Q6PGN9-2;Q6PGN9-4 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 AAAS(0.91)PPT(0.09)PIR 101.35 0.00075747 0 239790 323850 312580 267280 408160 310510 346350 388460 333540 376990 TRUE FALSE FALSE 293130.4582 361721.4404 428216.3495 281880.8296 367522.1573 326767.8235 272349.4931 293189.5759 400478.4186 283013.331 1.035747882 1.278107427 1.513060703 0.995998417 1.298603695 1.154602231 0.962320369 1.035956769 1.41505143 1 18.11051049 -6.517304499 24.66539346 1.099490369 1.230246353 0.094380182 0.176629091 509.4481884 2254274.043 0.066045227 0.052795429 3.04E-07 6.517304499 0.130755983 AAAS(ph)PPTPIR ddPTM_HeLa_A486_30min_R1 2 AAASPPTPIR 10 0 Q5T2Z1;Q6PGN9-2;Q6PGN9-4 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 AAAS(0.875)PPT(0.125)PIR;AAAS(0.983)PPT(0.017)PIR ; 140.63 1.19E-05 930860000 1009620 1232510 1107190 269088 1463210 1037150 1075550 1222090 1010440 828970 TRUE FALSE FALSE 938850.8517 1134841.419 1535923.62 626450.463 1279680.558 909196.978 806436.014 943846.785 1098025.753 621390.5163 1.510886998 1.826293432 2.471752592 1.008142942 2.059382183 1.463165198 1.2977926 1.518926923 1.767046204 1 19.2451407 -6.101054964 0.850736103 1.411107342 1.841479945 0.154435499 0.399168961 1.240270793 1.971291009 0.237372863 0.264296186 7.92E-07 6.101054964 0.430372603 AAASLAAVSGTAAASLGSAQPTDLGAHKRPAS(ph)VSSSAAVEHEQR ddPTM_HeLa_A485_30min_R1 1 AAASLAAVSGTAAASLGSAQPTDLGAHKRPASVSSSAAVEHEQR 44 2 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 AAASLAAVSGTAAAS(0.01)LGS(0.119)AQPT(0.119)DLGAHKRPAS(0.395)VS(0.119)S(0.119)S(0.119)AAVEHEQR 56.41 0.0035249 366140000 24292 60812 34331 15416 31184 54484 58254 102400 19986 18044 TRUE FALSE FALSE 29695.67159 67923.43441 47031.46553 16258.13704 28079.21147 57336.69799 45807.55701 77286.23944 23997.00688 13545.96288 2.192215634 5.01429356 3.471991321 1.200220109 2.07288413 4.232751745 3.381639049 5.705481416 1.771524631 1 13.72557533 -6.265723207 24.82702565 3.522581853 2.863406652 0 1.534834858 1379.601781 7995489.174 0.53413369 0.487654429 5.42E-07 6.265723207 -0.659175201 AAASPPT(ph)PIR ddPTM_HeLa_A485_30min_R1 1 AAASPPTPIR 10 0 Q5T2Z1;Q6PGN9-2;Q6PGN9-4 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 AAAS(0.311)PPT(0.689)PIR 94.363 0.012473 671450000 140960 203930 194990 171160 238410 183130 204810 246840 181320 225160 TRUE FALSE FALSE 172316.0657 227777.8395 267124.9152 180510.0374 214673.0633 192718.4036 161050.6704 186302.103 217709.2608 169031.7558 1.019430136 1.347544658 1.580323851 1.067906066 1.270016171 1.140131348 0.952783515 1.102172205 1.287978462 1 17.36693478 -5.948133248 1.518900123 1.095438089 1.297284446 0.183239202 0.166155481 0.64759307 3.073247238 0.067313136 0.078322224 1.13E-06 5.948133248 0.201846357 AAAT(ph)TPTKVYSEVHFTLAKPPSVVNR ddPTM_HeLa_A485_30min_R1 1 AAATTPTKVYSEVHFTLAKPPSVVNR 26 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AAAT(0.468)T(0.415)PT(0.083)KVY(0.015)S(0.02)EVHFTLAKPPSVVNR 68.434 0.0079573 506270000 178860 322640 201140 91873 385190 321630 383770 548370 199640 177170 TRUE FALSE FALSE 218646.7899 360369.9414 275550.0561 96891.78936 346839.1311 338470.0495 301774.4044 413881.3977 239705.9168 133004.7796 1.64390175 2.709451063 2.071730482 0.728483515 2.607719303 2.544796139 2.268898948 3.111778381 1.80223536 1 17.02111856 AAATGNAS(ph)PGKLEHSK ddPTM_HeLa_A485_30min_R1 4 AAATGNASPGKLEHSK 16 1 H0Y6H0;Q8NB78 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 0 AAAT(0.002)GNAS(0.998)PGKLEHSK;AAATGNAS(1)PGKLEHSK;AAATGNAS(1)PGKLEHSK;AAATGNAS(1)PGKLEHSK ;;; 240.91 1.04E-41 2910210000 2122610 1742180 1191640 3314540 2598720 2590340 4025550 4205040 1944820 4589140 TRUE FALSE FALSE 2594777.272 1945912.796 1632477.224 3495604.927 2339982.312 2725966.197 3165458.357 3173747.347 2335127.535 3445151.855 0.75316775 0.564826422 0.473847683 1.014644659 0.679210209 0.791247037 0.918815335 0.921221322 0.677801047 1 21.71613614 -5.254778583 24.98738043 0.846638031 0.594035201 0.464910562 0.127571909 480.4022058 1802181.261 0.034165036 0.05747877 5.56E-06 5.254778583 -0.252602831 AAATGNAS(ph)PGKLEHSK ddPTM_HeLa_A486_30min_R1 4 AAATGNASPGKLEHSK 16 1 H0Y6H0;Q8NB78 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 0 AAAT(0.049)GNAS(0.951)PGKLEHSK;AAATGNAS(1)PGKLEHSK;AAATGNAS(1)PGKLEHSK;AAATGNAS(1)PGKLEHSK ;;; 242.86 8.66E-42 2200470000 2751350 2543470 1261399 1615200 2695600 3382650 4338120 4069620 2227020 4814280 TRUE FALSE FALSE 2558494.573 2341916.174 1749846.474 3760267.228 2357492.713 2965333.035 3252676.492 3143056.365 2420059.887 3608752.952 0.708969167 0.648954419 0.484889517 1.041985217 0.65327074 0.821705746 0.901329777 0.870953597 0.670608357 1 21.78306895 -5.249942891 24.99440226 0.838617512 0.617739383 0.418875304 0.127355438 756.2931267 1644246.471 0.033405648 0.057234862 5.62E-06 5.249942891 -0.220878129 AAATPAK(ac)K ddPTM_HeLa_A485_30min_R1 2 AAATPAKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; AAATPAK(1)K;AAATPAK(1)K 155.75 0.00046798 243850000 310040 375620 322070 347990 469110 508220 657150 884210 651440 913920 FALSE TRUE FALSE 379007.3284 419545.4915 441217.0955 366999.8125 422403.7613 534829.6133 516744.5341 667356.1111 782178.0326 686096.5635 0.552411058 0.611496273 0.643083086 0.534909854 0.615662261 0.779525277 0.753165898 0.972685401 1.140040738 1 19.38805211 -7.026452215 1.120204745 1.08041707 0.592482009 0.906929991 0.06086265 0.141765432 0.330157691 0.048618135 0.022127704 9.41E-08 7.026452215 -0.487935061 AAATPAK(ac)K ddPTM_HeLa_A486_30min_R1 2 AAATPAKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; AAATPAK(1)K;AAATPAK(1)K 155.75 0.00046798 352330000 710120 761120 603190 282780 867470 821520 885260 826810 729350 973190 FALSE TRUE FALSE 660344.2551 700806.0792 836761.322 658326.1309 758663.8238 720169.215 663758.5847 638563.4121 792570.6452 729496.8896 0.905205032 0.960670414 1.147038917 0.902438571 1.03998226 0.987213551 0.909885421 0.875347683 1.086461994 1 19.4765423 -6.546967066 24.49780631 0.956252268 0.995167484 0.008415912 0.083975658 692.1117899 703869.3192 0.031685743 0.024545138 2.84E-07 6.546967066 0.038915216 AAATTPT(ph)KVYSEVHFTLAKPPSVVNR ddPTM_HeLa_A485_30min_R1 1 AAATTPTKVYSEVHFTLAKPPSVVNR 26 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AAAT(0.293)T(0.116)PT(0.586)KVY(0.003)S(0.001)EVHFTLAKPPSVVNR 95.878 0.0025515 442380000 135540 249330 149520 75474 285530 247010 263340 393670 151440 144230 TRUE FALSE FALSE 165690.4054 278486.9746 204833.67 79596.95351 257101.6306 259943.0616 207075.2577 297121.8152 181832.6189 108276.1154 1.530258126 2.572007443 1.891771508 0.73512938 2.374499951 2.400742406 1.912474021 2.744112257 1.679341915 1 16.72435551 AAAYDIS(ph)EDEED ddPTM_HeLa_A485_30min_R1 2 AAAYDISEDEED 12 0 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 AAAYDIS(1)EDEED;AAAYDIS(1)EDEED ; 212.12 1.08E-17 285610000 517860 551490 593530 668880 804820 552080 637210 574320 592640 764250 TRUE FALSE FALSE 633056.1704 615981.9582 813101.4458 705419.2207 724689.2949 580986.0551 501064.878 433467.1195 711577.412 573736.54 1.10339176 1.073632086 1.417203523 1.229517682 1.263104656 1.012635617 0.87333618 0.755515972 1.240251165 1 19.13002888 -6.375928357 4.29925822 0.946708796 1.220720123 0.409863619 0.144118059 0.22418541 6.89250145 0.053141872 0.046405074 4.21E-07 6.375928357 0.274011328 AAAYDIS(ph)EDEED ddPTM_HeLa_A486_30min_R1 2 AAAYDISEDEED 12 0 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 AAAYDIS(1)EDEED;AAAYDIS(1)EDEED ; 255.52 3.01E-33 496850000 552760 739200 660740 252080 850630 677230 726430 753640 626410 650090 TRUE FALSE FALSE 514014.3785 680623.0999 916596.2232 586854.9794 743936.0536 593680.2482 544669.5306 582052.6238 680707.7232 487303.2326 1.054814218 1.396713698 1.880956583 1.204291168 1.526638864 1.218297373 1.117721973 1.194436205 1.396887354 1 18.89446027 -6.356825527 6.382765375 1.190770528 1.425772479 0.207949892 0.221230714 0.409948805 23.03274401 0.079284872 0.069741452 4.40E-07 6.356825527 0.23500195 AADEDWDS(ph)ELEDDLLGEDLLSGKK ddPTM_HeLa_A486_30min_R1 1 AADEDWDSELEDDLLGEDLLSGKK 24 1 Q96EV2;A8MTF7;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 0 AADEDWDS(1)ELEDDLLGEDLLSGKK 56.914 0.016491 10173000 8557.1 8618.4 4073.7 6895.2 7355.8 8810.3 11045 9719.9 7065.7 11472 TRUE FALSE FALSE 7957.291479 7935.446596 5651.145737 16052.37406 6433.166974 7723.374763 8281.424178 7506.890954 7678.160565 8599.33653 0.925337839 0.92279754 0.657160668 1.866699135 0.748100386 0.898136122 0.963030595 0.872961644 0.892878252 1 13.07000964 AADGGERPLAAS(ph)PPGTVK ddPTM_HeLa_A486_30min_R1 1 AADGGERPLAASPPGTVK 18 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 AADGGERPLAAS(0.994)PPGT(0.006)VK 98.21 0.00020217 499750000 468730 477630 286340 232620 528120 512830 577670 655350 403150 697210 TRUE FALSE FALSE 435874.4475 439780.8593 397218.5165 541551.116 461878.2651 449562.2487 433130.856 506141.1112 438095.3666 522624.0779 0.834011416 0.841486028 0.760046338 1.036215396 0.883767673 0.860201946 0.82876177 0.968461142 0.83826097 1 18.99541407 AADIS(ph)LDNLVEGK ddPTM_HeLa_A485_30min_R1 2 AADISLDNLVEGK 13 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK ; 202.33 1.67E-21 315810000 252437 222252 208548 316178 324501 228756 343953 325769 219709 413780 TRUE FALSE FALSE 308590.7398 248242.4381 285698.5836 333450.0035 292192.541 240733.3104 270464.6317 245873.642 263802.581 310632.2611 0.993427852 0.799152146 0.919732492 1.073455804 0.940638104 0.774978457 0.870690735 0.791526421 0.849243991 1 18.24484814 -6.190386857 11.71598572 0.845111343 0.942930267 0.202397201 0.085588409 1.528785276 249.4725838 0.028464442 0.028466681 6.45E-07 6.190386857 0.097818925 AADIS(ph)LDNLVEGK ddPTM_HeLa_A486_30min_R1 4 AADISLDNLVEGK 13 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK ;;; 209.13 8.02E-22 556980000 1121680 1222330 812410 518958 1287360 1305210 1469270 1402720 944920 1406790 TRUE FALSE FALSE 1043056.024 1125468.119 1126996.909 1208160.451 1125887.305 1144186.461 1101643.106 1083351.277 1026826.426 1054520.627 0.989128138 1.067279378 1.068729127 1.145696366 1.067676891 1.085029947 1.044686161 1.027340053 0.973737639 1 20.00815589 -7.334231892 1.82891483 0.988267991 1.073181959 0.435872723 0.036653777 0.354694765 2.157193462 0.029931918 0.011186924 4.63E-08 7.334231892 0.084913968 AADIS(ph)LDNLVEGKR ddPTM_HeLa_A485_30min_R1 4 AADISLDNLVEGKR 14 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 AADIS(1)LDNLVEGKR;AADIS(1)LDNLVEGKR;AADIS(1)LDNLVEGKR;AADIS(1)LDNLVEGKR ;;; 188.6 7.67E-18 514740000 666720 804690 665150 618170 1169050 1017310 1271120 1627830 720690 956750 TRUE FALSE FALSE 815029.5638 898791.4956 911216.6642 651939.0618 1052655.277 1070574.779 999534.8279 1228602.14 865325.8724 718249.8327 1.134743827 1.251363321 1.26866255 0.90767729 1.465583742 1.490532583 1.391625563 1.710549845 1.20477003 1 19.45412623 -5.797618386 24.99972663 1.419094806 1.157668636 0.235206165 0.199664853 215.4959423 148906.761 0.05896435 0.066861413 1.59E-06 5.797618386 -0.26142617 AADIS(ph)LDNLVEGKR ddPTM_HeLa_A486_30min_R1 3 AADISLDNLVEGKR 14 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 AADIS(1)LDNLVEGKR;AADIS(1)LDNLVEGKR;AADIS(1)LDNLVEGKR ;; 176.81 4.49E-13 434700000 504252 480593 362249 199260 641130 460629 612260 669830 346639 633930 TRUE FALSE FALSE 468906.5388 442509.0604 502521.5142 463887.35 560713.4971 403801.2773 459066.0722 517324.3313 376685.9476 475189.8018 0.986777361 0.93122592 1.057517464 0.976214869 1.179977969 0.849768399 0.966068864 1.088668842 0.792706296 1 18.85814435 -6.306361992 24.99992912 0.946648494 1.020006048 0.163289228 0.097148941 997.2970464 555003.7444 0.033532345 0.029572886 4.94E-07 6.306361992 0.073357555 AADKS(ph)PESQNLIDGTK ddPTM_HeLa_A485_30min_R1 4 AADKSPESQNLIDGTK 16 1 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 AADKS(0.997)PES(0.003)QNLIDGTK;AADKS(0.983)PES(0.017)QNLIDGTK;AADKS(0.987)PES(0.013)QNLIDGTK;AADKS(0.977)PES(0.023)QNLIDGTK ;;; 234.23 1.34E-41 1602320000 2129220 1162230 912170 3746070 1968400 1689670 2905360 1882680 1420970 5314210 TRUE FALSE FALSE 2602857.643 1298142.688 1249619.642 3950708.319 1772419.185 1778138.508 2284606.101 1420949.778 1706145.645 3989475.248 0.65243108 0.325391839 0.313229075 0.9902827 0.444273764 0.445707367 0.572658297 0.356174607 0.42766167 1 21.92776756 -10.62185289 2.789991475 1.043911189 0.500916141 0.377624019 0.191361245 43749219.28 42337288.7 13976442.19 0.048785596 2.39E-11 10.62185289 -0.542995048 AADKS(ph)PESQNLIDGTK ddPTM_HeLa_A486_30min_R1 4 AADKSPESQNLIDGTK 16 1 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 AADKS(0.994)PES(0.006)QNLIDGTK;AADKS(0.909)PES(0.091)QNLIDGTK;AADKS(0.996)PES(0.004)QNLIDGTK;AADKS(0.98)PES(0.02)QNLIDGTK ;;; 263.16 3.96E-51 1928860000 2243090 2205520 865460 1472520 1923850 2895280 3869470 3312450 1784140 3969370 TRUE FALSE FALSE 2085860.974 2030746.563 1200589.29 3428100.977 1682542.794 2538089.791 2901287.679 2558277.445 1938790.692 2975413.916 0.701032204 0.682508928 0.403503285 1.15214255 0.565481927 0.853020744 0.975087084 0.859805566 0.651603692 1 21.50465895 -5.246453872 24.99825464 0.851034184 0.604364251 0.330842086 0.174767325 1019.592554 1700843.111 0.046007699 0.07928024 5.67E-06 5.246453872 -0.246669933 AADPPAENSS(ph)APEAEQGGAE ddPTM_HeLa_A485_30min_R1 1 AADPPAENSSAPEAEQGGAE 20 0 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 AADPPAENS(0.067)S(0.933)APEAEQGGAE 246.67 1.73E-46 489760000 113990 147220 141880 103520 159060 134430 160750 183550 121990 133590 TRUE FALSE FALSE 139346.6822 164436.0984 194367.3161 109175.0355 143223.4279 141468.5469 126404.4493 138534.0747 146472.274 100288.4715 1.38945863 1.639631114 1.938082345 1.088610025 1.428114575 1.410616243 1.260408573 1.381355928 1.460509586 1 16.61379625 -11.43262516 0.076267488 1.11E-08 2.005329101 0.330346469 0.20514108 177.4216075 1.683617359 42.05349595 10.61219593 3.69E-12 11.43262516 2.00532909 AADPPAENSS(ph)APEAEQGGAE ddPTM_HeLa_A486_30min_R1 1 AADPPAENSSAPEAEQGGAE 20 0 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 AADPPAENS(0.055)S(0.945)APEAEQGGAE 217.33 3.00E-35 389030000 171450 207410 175660 60731 208590 182230 202310 187050 164540 165900 TRUE FALSE FALSE 159432.2404 190974.0762 243680.2563 141384.8372 182426.6972 159748.3154 151689.8982 144462.7983 178802.4597 124357.5602 1.282047028 1.535685293 1.959513004 1.136921929 1.46695301 1.284588691 1.21978831 1.161672825 1.437809325 1 16.92413469 -5.296356776 24.99977948 1.260675201 1.586742504 0.385226797 0.200908619 634.9409886 454596.7975 0.055979211 0.083034761 5.05E-06 5.296356776 0.326067302 AADRLPNLSS(ph)PSAEGPPGPPSGPAPR ddPTM_HeLa_A485_30min_R1 4 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AADRLPNLS(0.175)S(0.825)PS(0.001)AEGPPGPPSGPAPR;AADRLPNLS(0.104)S(0.895)PS(0.002)AEGPPGPPSGPAPR;AADRLPNLS(0.262)S(0.687)PS(0.052)AEGPPGPPSGPAPR;AADRLPNLS(0.21)S(0.784)PS(0.006)AEGPPGPPSGPAPR ;;; 234.88 1.37E-49 6375100000 539810 700310 711230 492140 818590 613141 788600 787370 646730 665620 TRUE FALSE FALSE 659888.8722 782205.1626 974343.5737 519024.362 737088.3054 645244.1147 620109.1677 594266.273 776522.7788 499693.1838 1.3205881 1.565370887 1.949883659 1.038686095 1.475081769 1.291280601 1.240979841 1.189262316 1.553999142 1 18.93068301 -5.273074569 24.99571796 1.273519753 1.607289905 0.365412696 0.21425573 808.0990687 1736026.536 0.05875175 0.087950766 5.33E-06 5.273074569 0.333770152 AADRLPNLSS(ph)PSAEGPPGPPSGPAPR ddPTM_HeLa_A486_30min_R1 4 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AADRLPNLS(0.288)S(0.712)PS(0.001)AEGPPGPPSGPAPR;AADRLPNLS(0.238)S(0.726)PS(0.035)AEGPPGPPSGPAPR;AADRLPNLS(0.149)S(0.85)PSAEGPPGPPSGPAPR;AADRLPNLS(0.063)S(0.935)PS(0.003)AEGPPGPPSGPAPR ;;; 246.59 4.58E-50 4928250000 675950 660970 670760 219902 810480 640508 693320 751520 563385 693210 TRUE FALSE FALSE 628569.3956 608592.33 930496.2356 511942.9692 708822.041 561488.6352 519844.0028 580415.3016 612219.6654 519625.704 1.209658011 1.171212905 1.790704787 0.985214868 1.36410119 1.080563627 1.000420108 1.11698728 1.178193574 1 18.98711327 -6.029318793 1.42244918 1.077205526 1.335056733 0.23126298 0.200573052 0.625479679 2.592913988 0.08329513 0.091131445 9.35E-07 6.029318793 0.257851208 AADS(ph)DDGAVSAPAASDGGVSK ddPTM_HeLa_A485_30min_R1 5 AADSDDGAVSAPAASDGGVSK 21 0 Q96GM8 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK ;;;; 464.87 5.90E-238 5382260000 1477560 1441750 1089643 1779650 1972140 1723230 2321630 2420590 1431550 2412930 TRUE FALSE FALSE 1806238.124 1610350.121 1492747.29 1876867.773 1775786.817 1813455.658 1825594.785 1826936.507 1718848.954 1811430.958 0.997133298 0.888993375 0.824070762 1.036124377 0.980322661 1.001117735 1.007819137 1.008559835 0.948890128 1 20.78869839 -5.276685603 24.99361628 0.997763375 0.901958561 0.485856205 0.044374675 644.2035077 1056061.863 0.012501371 0.01862195 5.29E-06 5.276685603 -0.095804814 AADS(ph)DDGAVSAPAASDGGVSK ddPTM_HeLa_A486_30min_R1 3 AADSDDGAVSAPAASDGGVSK 21 0 Q96GM8 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK ;; 396.49 3.08E-158 3408140000 1788250 2010330 1183300 754490 2038070 1966090 2307330 2272100 1580100 2256000 TRUE FALSE FALSE 1662902.91 1851024.129 1641505.45 1756490.85 1782436.256 1723533.806 1730011.63 1754792.43 1717064.34 1691082.916 0.983336118 1.094579167 0.970683007 1.038678135 1.054020616 1.019189414 1.023019991 1.037673797 1.015363779 1 20.68951597 -3.931394204 19.45281979 1.028847193 2.29E-05 0.157279375 0.031069623 134.4641435 120165.202 0.006939764 12743.39232 0.000117113 3.931394204 -1.028824244 AADTEEMDIEMDS(ph)GDEA ddPTM_HeLa_A485_30min_R1 1 AADTEEMDIEMDSGDEA 17 0 Q9UBB5 Q9UBB5 MBD2 Methyl-CpG-binding domain protein 2 1 0 AADTEEMDIEMDS(1)GDEA 176.87 7.54E-13 132660000 185950 226270 247780 193110 281060 245750 293120 327060 227400 300950 TRUE FALSE FALSE 227313.936 252730.3082 339444.133 203659.1103 253076.6795 258617.09 230492.5174 246848.0222 273037.0942 225928.7036 1.006131281 1.118628595 1.502439166 0.901430881 1.120161695 1.144684522 1.020200239 1.092592567 1.208509985 1 17.78550805 AADTEEMDIEMDS(ph)GDEA ddPTM_HeLa_A486_30min_R1 4 AADTEEMDIEMDSGDEA 17 0 Q9UBB5 Q9UBB5 MBD2 Methyl-CpG-binding domain protein 2 1 0 AADTEEMDIEMDS(1)GDEA;AADTEEMDIEMDS(1)GDEA;AADTEEMDIEMDS(1)GDEA;AADTEEMDIEMDS(1)GDEA ;;; 261.45 1.35E-55 204652000 473464 549089 562293 253519 684060 539909 618400 668770 577519 591556 TRUE FALSE FALSE 440276.6186 505577.1879 780027.9083 590205.0441 598258.8162 473300.517 463669.7792 516505.6701 627578.8119 443426.5272 0.992896436 1.140159997 1.759091666 1.331009779 1.349172364 1.067370777 1.045651874 1.164805528 1.415293794 1 18.75833555 -6.250092994 24.04744899 1.143113958 1.330402914 0.145898706 0.210831589 915.3093504 1939899.891 0.07387936 0.073201915 5.62E-07 6.250092994 0.187288957 AAEAAAAPAESAAPAAGEEPSKEEGEPK ddPTM_HeLa_A485_30min_R1 2 AAEAAAAPAESAAPAAGEEPSKEEGEPK 28 1 P80723 P80723 BASP1 Brain acid soluble protein 1 0 0 ; ; 233.43 1.84E-59 30863000 28222.2 16498.7 7613.6 47554 18137.7 24639.8 40975 34179 19799.4 100306 FALSE FALSE TRUE 34500.13102 18428.07945 10430.18747 50151.75461 16331.8469 25929.90183 32220.35652 25796.54666 23772.95797 75301.5602 0.458159578 0.24472374 0.138512236 0.666012158 0.216885903 0.344347471 0.427884315 0.342576523 0.315703392 1 16.20039214 -10.47823217 2.714421015 1.024978138 0.348392882 0.663557887 0.138729841 7625003.118 7954654.957 1429467.402 0.034582023 3.32E-11 10.47823217 -0.676585256 AAEAGGAEEQYGFLTT(ph)PTK ddPTM_HeLa_A485_30min_R1 7 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAEAGGAEEQYGFLT(0.04)T(0.959)PT(0.001)K;AAEAGGAEEQYGFLT(0.016)T(0.984)PTK;AAEAGGAEEQYGFLT(0.007)T(0.993)PTK;AAEAGGAEEQYGFLT(0.003)T(0.979)PT(0.017)K;AAEAGGAEEQYGFLT(0.002)T(0.998)PTK;AAEAGGAEEQYGFLT(0.002)T(0.996)PT(0.002)K;AAEAGGAEEQYGFLT(0.002)T(0.996)PT(0.002)K ;;;;;; 258.9 2.14E-57 3997750000 1288428 1275580 1030702 1538610 1682790 1416990 1916690 1847910 1246955 2072480 TRUE FALSE FALSE 1575034.364 1424747.985 1412001.561 1622660.368 1515245.519 1491181.405 1507173.524 1394707.175 1497207.431 1555848.877 1.012331202 0.915736744 0.907544159 1.042942147 0.973902762 0.958435891 0.968714601 0.896428436 0.962309034 1 20.5692705 -4.223940286 22.41674681 0.957062795 1.01233173 0.129155234 0.041837888 10692.54738 6391471.858 0.010696626 2.029411749 5.97E-05 4.223940286 0.055268934 AAEAGGAEEQYGFLTT(ph)PTK ddPTM_HeLa_A486_30min_R1 5 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAEAGGAEEQYGFLT(0.095)T(0.905)PTK;AAEAGGAEEQYGFLT(0.008)T(0.992)PTK;AAEAGGAEEQYGFLT(0.008)T(0.962)PT(0.03)K;AAEAGGAEEQYGFLT(0.03)T(0.97)PTK;AAEAGGAEEQYGFLT(0.004)T(0.949)PT(0.047)K ;;;; 251.74 3.76E-46 4641450000 1886370 1967860 1313990 853780 1886940 2054050 2463760 2415560 1613280 2293670 TRUE FALSE FALSE 1754145.204 1811919.607 1822802.118 1987642.988 1650262.39 1800642.195 1847301.189 1865589.719 1753120.409 1719320.103 1.020255159 1.053858211 1.060187754 1.156063367 0.95983429 1.047298983 1.074437032 1.085074104 1.019659112 1 20.71340674 -5.769422007 24.99986961 1.038286061 1.070367106 0.148829003 0.046664702 464.8687424 1455866.802 0.014840282 0.017126379 1.70E-06 5.769422007 0.032081045 AAEAGGAEEQYGFLTTPT(ph)K ddPTM_HeLa_A486_30min_R1 1 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAEAGGAEEQYGFLT(0.005)T(0.108)PT(0.887)K 222.5 4.55E-34 196640000 305320 335000 223790 138950 333430 360520 428420 407740 268640 391080 TRUE FALSE FALSE 283918.6447 308453.38 310447.4813 323482.6221 291608.1003 316042.7079 321224.7846 314906.5029 291925.9315 293151.0225 0.968506411 1.05219957 1.059001871 1.103467487 0.994736767 1.07808837 1.095765527 1.074212535 0.995820956 1 18.16128456 -4.261613031 5.544405699 1.055364458 0.965429565 0.277831874 0.038881143 0.178055666 21.75136043 0.009442906 0.060873016 5.48E-05 4.261613031 -0.089934894 AAEDDEDDDVDTKK ddPTM_HeLa_A485_30min_R1 2 AAEDDEDDDVDTKK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ; ; 247.64 2.63E-35 759940000 450190 287510 184236 864340 425510 442250 770470 718540 329440 1109470 FALSE FALSE TRUE 550333.2124 321131.7935 252392.5631 911556.7056 383144.7303 465405.5262 605852.7903 542316.9384 395555.5862 832899.5473 0.660743801 0.385558852 0.303028815 1.094437749 0.460013133 0.558777499 0.727401993 0.651119262 0.474913917 1 19.66778298 -14 0.274310173 3.835622348 0.564899405 0.248717923 0.210203843 321.0659083 3.106269406 517.5412135 0.254075442 1.00E-14 14 -3.270722943 AAEDDEDDDVDTKK ddPTM_HeLa_A486_30min_R1 2 AAEDDEDDDVDTKK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ; ; 186.68 3.90E-17 1204860000 579640 545380 195186 464940 670530 713580 1002840 849640 371140 1140460 FALSE FALSE TRUE 539010.2293 502162.1026 270767.2465 1082403.817 586425.875 625545.7547 751918.825 656195.5195 403310.714 854881.3929 0.630508786 0.587405583 0.316730775 1.266145018 0.685973376 0.731733969 0.879559236 0.767586621 0.471773883 1 19.70536475 -5.216042318 24.99999805 0.811382965 0.519134203 0.320127953 0.210805549 566.2496266 311830.7709 0.056247723 0.097423424 6.08E-06 5.216042318 -0.292248763 AAEDSPYWVS(ph)PAYSK ddPTM_HeLa_A485_30min_R1 3 AAEDSPYWVSPAYSK 15 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 AAEDSPYWVS(1)PAYSK;AAEDSPYWVS(1)PAYSK;AAEDSPYWVS(1)PAYSK ;; 179.81 1.60E-12 270000000 347046 353548 294656 370627 500326 373527 469510 498102 330350 497546 TRUE FALSE FALSE 424245.1854 394892.3631 403661.5161 390873.4145 450511.7867 393084.2961 369195.353 375941.7035 396648.2149 373516.9389 1.135812439 1.057227456 1.080704713 1.046467707 1.206134822 1.0523868 0.988430014 1.006491713 1.061928319 1 18.51081414 -6.517985171 24.82163457 1.015561317 1.101098145 0.470649782 0.045577647 188.8607044 957967.6845 0.017099045 0.013623584 3.03E-07 6.517985171 0.085536828 AAEDSPYWVS(ph)PAYSK ddPTM_HeLa_A486_30min_R1 2 AAEDSPYWVSPAYSK 15 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 AAEDSPYWVS(1)PAYSK;AAEDSPYWVS(1)PAYSK ; 224.64 1.02E-33 459010000 490970 537000 352590 193739 603210 529120 601210 612170 388700 526560 TRUE FALSE FALSE 456555.5384 494446.1643 489122.2907 451034.183 527549.7771 463842.5541 450780.899 472792.2546 422392.829 394705.9487 1.156697891 1.25269499 1.239206788 1.142709363 1.336564039 1.175159776 1.14206766 1.197834125 1.070145587 1 18.59041874 -7.884260738 0.875336601 0.997613233 1.220337369 0.601105065 0.056747049 0.388612552 0.669998859 0.052720801 0.019059803 1.31E-08 7.884260738 0.222724136 AAEEEDEADPKR ddPTM_HeLa_A485_30min_R1 2 AAEEEDEADPKR 12 1 P20962 P20962 PTMS Parathymosin 0 0 ; ; 195.25 3.84E-14 64775000 45333 40568 31807 58557 54036 46751 71114 70934 39178 80004 FALSE FALSE TRUE 55417.16945 45312.07471 43573.7329 61755.82064 48655.98611 49198.81007 55919.91295 53537.32528 47040.66524 60060.47516 0.922689494 0.75444083 0.725497639 1.028227307 0.81011657 0.819154526 0.931060116 0.891390305 0.783221663 1 15.87412827 -14 0.245587005 1.85715174 0.838203475 0.191662962 0.088419688 302.56396 3.011875976 130.219126 0.134267635 1.00E-14 14 -1.018948265 AAEEEDEADPKR ddPTM_HeLa_A486_30min_R1 1 AAEEEDEADPKR 12 1 P20962 P20962 PTMS Parathymosin 0 0 149.26 0.00010177 7468300 8071.1 7218.9 3558.4 3250.9 7704.4 9098.2 10318 8294.2 5731.3 10372 FALSE FALSE TRUE 7505.357569 6646.848073 4936.307777 7568.259491 6738.042311 7975.756588 7736.327267 6405.791721 6228.093699 7774.78369 0.965346159 0.854923859 0.634912555 0.973436663 0.866653348 1.025849323 0.995053699 0.823918964 0.801063277 1 12.92458682 AAEEPS(ph)KVEEK ddPTM_HeLa_A486_30min_R1 1 AAEEPSKVEEK 11 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AAEEPS(1)KVEEK 52.555 0.021707 430510000 313250 242000 55754 319740 169020 452990 623520 509770 204760 824760 TRUE FALSE FALSE 291292.7926 222823.0387 77343.44194 744370.8788 147819.9356 397104.6995 467508.7011 393706.4992 222508.7617 618234.7277 0.471168602 0.360418185 0.125103684 1.204026311 0.23910002 0.642320274 0.756199353 0.636823655 0.35990984 1 19.23779517 -14 0.08132893 2.317246214 0.139907952 0.187983273 0.289988238 433.5697311 2.485946896 105.3472526 9.446626403 1.00E-14 14 -2.177338262 AAEEQGDDQDS(ph)EK ddPTM_HeLa_A486_30min_R1 4 AAEEQGDDQDSEK 13 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 AAEEQGDDQDS(1)EK;AAEEQGDDQDS(1)EK;AAEEQGDDQDS(1)EK;AAEEQGDDQDS(1)EK ;;; 271.79 1.89E-48 965260000 1480160 807120 529421 766660 612713 1650050 1334940 924930 1243040 2762060 TRUE FALSE FALSE 1376408.428 743160.8717 734426.9896 1784823.225 535860.8222 1446483.607 1000923.892 714343.6301 1350787.708 2070422.198 0.664796015 0.358941704 0.354723298 0.862057616 0.258817174 0.698641856 0.48343951 0.34502317 0.65242138 1 20.98149356 -8.017667706 20.735276 1.00000001 0.502918193 0.414422336 0.179187005 108.1748557 126958.3884 0.163263039 0.042154332 9.60E-09 8.017667706 -0.497081818 AAEEQGDDQDS(ph)EKSKPAGSDGER ddPTM_HeLa_A485_30min_R1 3 AAEEQGDDQDSEKSKPAGSDGER 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(0.999)EKS(0.001)KPAGSDGER ;; 220.67 2.32E-38 1878030000 1018498 582362 433197 2590110 918646 875711 1597810 1201570 637457 3203300 TRUE FALSE FALSE 1245059.366 650464.17 593454.5971 2731601.151 827182.3787 921561.8739 1256424.841 906883.0735 765388.7728 2404776.262 0.517744368 0.270488436 0.246781626 1.135906568 0.343974777 0.383221462 0.522470577 0.377117442 0.318278579 1 21.19747124 -10.48746253 3.70803065 1.006793999 0.459644482 0.309298842 0.243260913 690941559.7 1521327371 52169608.75 0.061357962 3.25E-11 10.48746253 -0.547149517 AAEEQGDDQDS(ph)EKSKPAGSDGER ddPTM_HeLa_A486_30min_R1 4 AAEEQGDDQDSEKSKPAGSDGER 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 AAEEQGDDQDS(0.999)EKS(0.001)KPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER;AAEEQGDDQDS(1)EKSKPAGSDGER ;;; 276.24 3.76E-75 2653090000 1549750 1368760 508568 1656340 1158677 2027140 2820300 2420780 1154799 3914050 TRUE FALSE FALSE 1441120.528 1260294.473 705499.1495 3856043.227 1013344.926 1777052.077 2114631.11 1869621.239 1254897.907 2933946.404 0.49118843 0.429556065 0.240460817 1.314285504 0.345386311 0.605686619 0.720746332 0.637237694 0.427716711 1 21.48441109 -11.66733595 2.004087228 9.99972193 0.586180963 0.167973287 0.280606805 14226609.21 418660.3803 585177202.1 0.070876359 2.15E-12 11.66733595 -9.413540966 AAEEQGDDQDS(ph)EKSKPAGSDGERR ddPTM_HeLa_A485_30min_R1 1 AAEEQGDDQDSEKSKPAGSDGERR 24 3 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 AAEEQGDDQDS(0.989)EKS(0.003)KPAGS(0.008)DGERR 168.72 2.21E-13 274510000 167480 114520 63987 395250 166990 153390 317750 242950 128520 499870 TRUE FALSE FALSE 204735.3482 127912.1178 87658.45402 416841.5067 150363.8893 161421.2632 249860.1167 183366.1316 154312.7851 375261.6084 0.545580319 0.340861188 0.233592918 1.11080243 0.40069084 0.430156615 0.665829147 0.488635468 0.411213888 1 18.51753718 -11.11198484 2.363806547 1.89002641 0.516254618 0.290031493 0.228022887 36213363.48 10096479.87 173103605.1 0.056490795 7.73E-12 11.11198484 -1.373771792 AAEEQGDDQDSEKSKPAGS(ph)DGERR ddPTM_HeLa_A486_30min_R1 1 AAEEQGDDQDSEKSKPAGSDGERR 24 3 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 AAEEQGDDQDS(0.048)EKS(0.325)KPAGS(0.627)DGERR 120.57 0.00032375 441200000 172630 134080 52359 202780 130060 246710 337620 282060 115640 473710 TRUE FALSE FALSE 160529.5285 123455.0125 72633.80702 472082.0879 113746.662 216273.4286 253143.905 217841.0953 125663.7683 355089.9327 0.452081328 0.347672522 0.204550454 1.329471901 0.320331982 0.60906663 0.712900822 0.613481474 0.353892794 1 18.43782493 AAEK(ac)QMK ddPTM_HeLa_A485_30min_R1 1 AAEKQMK 7 1 P27797;K7EL50 P27797 CALR Calreticulin 0 1 AAEK(1)QMK 119.29 0.023865 49617000 31435 38285 25924 26427 42343 39149 46214 48272 32863 56005 FALSE TRUE FALSE 38427.6073 42762.09771 35514.36639 27870.64009 38127.18224 41198.7811 36340.00137 36433.21631 39458.30266 42043.9842 0.913985866 1.017080054 0.844695551 0.66289246 0.906840371 0.979897169 0.864332961 0.866550043 0.938500559 1 15.35961177 -5.978055838 24.99994777 0.920303598 0.859216942 0.112877303 0.091066331 673.009593 766724.252 0.030845518 0.034973086 1.05E-06 5.978055838 -0.061086656 AAEK(ac)QMK ddPTM_HeLa_A486_30min_R1 1 AAEKQMK 7 1 P27797;K7EL50 P27797 CALR Calreticulin 0 1 AAEK(1)QMK 119.29 0.023865 38736000 54227 56600 44865 24233 64645 64471 65403 61821 51862 78452 FALSE TRUE FALSE 50425.96733 52114.80987 62237.92953 56415.64867 56536.62131 56517.22351 49038.47764 47745.70784 56357.43992 58807.10856 0.857480814 0.886199154 1.058340242 0.95933383 0.961390939 0.961061084 0.833886903 0.81190368 0.958344005 1 15.84370294 -6.735683604 24.97484248 0.885358926 0.950758307 0.073791634 0.071588851 424.5785352 411704.6663 0.027913668 0.021613829 1.84E-07 6.735683604 0.065399381 AAEK(ac)RPAEDYVPR ddPTM_HeLa_A486_30min_R1 1 AAEKRPAEDYVPR 13 2 Q969E4;Q5H9L2 Q969E4 TCEAL3;TCEAL5 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5 0 1 AAEK(1)RPAEDYVPR 121.45 0.0016939 15168000 24130 39731 34243 18037 45862 39018 46115 48434 39712 42516 FALSE TRUE FALSE 22438.61161 36582.57086 47502.80666 41991.04754 40109.56031 34204.35587 34576.53925 37406.63551 43154.26813 31869.71687 0.704073139 1.147878753 1.490531179 1.317584581 1.258547746 1.073255718 1.084933995 1.173736047 1.354083826 1 14.95989858 -4.283152699 4.300582958 1.225392995 0.674301225 0.547221117 0.13927754 0.147642622 6.262667506 0.036761225 0.238004897 5.21E-05 4.283152699 -0.55109177 AAEPHFGT(ph)LPK ddPTM_HeLa_A486_30min_R1 2 AAEPHFGTLPK 11 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 AAEPHFGT(1)LPK;AAEPHFGT(1)LPK ; 134.21 3.60E-05 221280000 783470 927260 628450 455950 899100 1082860 1417550 1300900 655790 1178810 TRUE FALSE FALSE 728552.7988 853780.5406 871802.6705 1061474.642 786326.4942 949267.7429 1062863.997 1004713.468 712634.4052 883628.3032 0.824501429 0.96622136 0.98661696 1.201268269 0.88988378 1.074283994 1.202840598 1.137031787 0.806486622 1 19.7530801 -4.355160426 1.629850606 1.051977641 0.771107571 0.224739834 0.120355868 1.202181367 3.584607054 0.033792545 0.504482783 4.41E-05 4.355160426 -0.280870069 AAESETPGKS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 AAESETPGKSPEK 13 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AAESETPGKS(1)PEK;AAESET(0.001)PGKS(0.999)PEK ; 218.6 3.64E-26 290680000 1032000 650375 542913 2072540 922860 757980 1221620 914890 750990 2804650 TRUE FALSE FALSE 1261564.84 726430.6987 743759.1112 2185757.612 830976.818 797666.6607 960610.9073 690511.793 901706.8045 2105502.371 0.599175217 0.345015379 0.35324544 1.038116909 0.394669144 0.378848617 0.45623834 0.327955837 0.42826207 1 21.00573307 -10.63444313 5.434381861 1.005381851 0.478196192 0.375802998 0.200970493 0.013474395 0.000906387 0.200083549 0.048250662 2.32E-11 10.63444313 -0.527185659 AAESETPGKS(ph)PEK ddPTM_HeLa_A486_30min_R1 3 AAESETPGKSPEK 13 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AAESET(0.011)PGKS(0.989)PEK;AAESETPGKS(1)PEK;AAES(0.003)ET(0.009)PGKS(0.988)PEK ;; 183.41 5.06E-16 4492770000 4153580 4244850 1750960 2992880 3193520 5406690 6770570 5711350 3302810 8444060 TRUE FALSE FALSE 3862435.491 3908472.627 2428978.604 6967575.892 2792958.943 4739667.559 5076501.774 4411000.283 3589100.23 6329612.414 0.610216746 0.617490041 0.383748395 1.100790291 0.441252759 0.748808497 0.802024112 0.696883157 0.567033176 1 22.59368573 -14 0.199993992 2.453760208 0.616252959 0.215794909 0.190516973 222.8238156 2.204480607 130.1925128 0.445161872 1.00E-14 14 -1.837507248 AAESETPGKS(ph)PEKKPK ddPTM_HeLa_A485_30min_R1 3 AAESETPGKSPEKKPK 16 3 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AAES(0.001)ET(0.001)PGKS(0.998)PEKKPK;AAESET(0.007)PGKS(0.993)PEKKPK;AAES(0.005)ET(0.03)PGKS(0.964)PEKKPK ;; 133.21 6.78E-05 19906700000 10794600 4653570 1717960 25876400 7854200 8912900 21978200 19370700 5173820 35136400 TRUE FALSE FALSE 13195821.53 5197764.531 2353504.894 27289962.21 7072208.27 9379565.662 17282378.02 14620005.45 6212158.217 26377542.12 0.500267291 0.197052648 0.089223813 1.034590793 0.268114756 0.35558907 0.655192889 0.554259581 0.235509366 1 24.6528068 -14 0.281689466 5.110886493 0.401366108 0.290270555 0.261933788 306.9102243 2.937785228 739.1585437 0.300355875 1.00E-14 14 -4.709520385 AAESETPGKS(ph)PEKKPK ddPTM_HeLa_A486_30min_R1 5 AAESETPGKSPEKKPK 16 3 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AAESET(0.001)PGKS(0.999)PEKKPK;AAES(0.022)ET(0.145)PGKS(0.833)PEKKPK;AAES(0.001)ET(0.035)PGKS(0.964)PEKKPK;AAESET(0.007)PGKS(0.993)PEKKPK;AAESET(0.003)PGKS(0.996)PEKKPK ;;;; 158.89 5.30E-09 20348140000 16705310 11825770 2567697 19276630 8685272 21195610 36129530 29074390 8321164 46833120 TRUE FALSE FALSE 15534354.04 10888652.92 3561978.044 44876968.83 7595884.199 18580711.14 27089539.45 22454786.09 9042449.195 35105801.92 0.442501045 0.310166762 0.101464084 1.278334816 0.216371192 0.529277502 0.771654199 0.639631766 0.257577059 1 25.06520615 -14 0.134384027 2.475873441 0.342099409 0.163000772 0.324416926 274.098753 2.291609414 111.2788051 2.24615394 1.00E-14 14 -2.133774032 AAESLTAIPEPAS(ph)PQLLETPIHASQIQK ddPTM_HeLa_A485_30min_R1 2 AAESLTAIPEPASPQLLETPIHASQIQK 28 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AAESLTAIPEPAS(1)PQLLETPIHASQIQK;AAESLTAIPEPAS(1)PQLLETPIHASQIQK ; 270.95 1.06E-66 454650000 247980 719030 735300 82125 943930 405320 397640 537720 550240 192239 TRUE FALSE FALSE 303142.2955 803114.3038 1007318.068 86611.2808 849949.0149 426541.9285 312680.9656 405843.3269 660668.1209 144317.3552 2.100525575 5.564918389 6.979881713 0.600144596 5.88944423 2.955583047 2.166620675 2.812158845 4.577884067 1 17.13888528 -6.204882615 0.916156692 2.694546491 4.472036745 0.108494041 1.944158778 1.34615811 2.434170866 1.150795003 1.124347199 6.24E-07 6.204882615 1.777490254 AAESLTAIPEPAS(ph)PQLLETPIHASQIQK ddPTM_HeLa_A486_30min_R1 2 AAESLTAIPEPASPQLLETPIHASQIQK 28 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AAESLTAIPEPAS(1)PQLLETPIHASQIQK;AAESLTAIPEPAS(1)PQLLETPIHASQIQK ; 180.35 2.39E-20 258190000 327380 406020 455430 33382.4 523930 195238 227855 257030 387510 79902 TRUE FALSE FALSE 304432.3526 373845.4965 631784.6928 77715.91425 458213.8139 171151.5206 170843.269 198509.8799 421099.6788 59894.01913 5.082850626 6.241783436 10.54837698 1.297557175 7.650410185 2.857572811 2.852426194 3.314352298 7.030746725 1 15.87012433 -5.269592731 24.99495864 3.903498344 7.186081727 0.313461699 2.41260006 762.3336164 2337013.237 0.658896276 0.996507386 5.38E-06 5.269592731 3.282583382 AAESPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AAESPSPR 8 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 AAESPS(1)PR 96.665 0.0023793 0 382230 406500 433980 153300 435130 510740 450000 401640 485880 446690 TRUE FALSE FALSE 355437.6508 374287.4596 602028.6784 356890.1474 380551.938 447730.0916 337405.2404 310195.3397 527996.4696 334835.9165 1.061527851 1.11782351 1.797981186 1.065865786 1.136532609 1.33716268 1.007673382 0.926409995 1.576881223 1 18.35309476 AAET(ph)SDDDLIPFGDRPTVSR ddPTM_HeLa_A485_30min_R1 1 AAETSDDDLIPFGDRPTVSR 20 1 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 0 AAET(0.536)S(0.464)DDDLIPFGDRPTVSR 94.201 0.00052877 45877000 9464.5 10670 11943 10773 19719 11230 13369 15003 11226 13806 TRUE FALSE FALSE 11569.84537 11917.76368 16361.21269 11361.50171 17755.70712 11817.98544 10512.60394 11323.49073 13478.95523 10364.41828 1.116304366 1.149872898 1.578594403 1.096202546 1.713140732 1.140245899 1.014297537 1.092535096 1.300502823 1 13.33935152 -6.493467812 24.98564535 1.104934513 1.332020067 0.236475476 0.199749755 1032.511321 877157.0886 0.069008382 0.060754962 3.21E-07 6.493467812 0.227085555 AAEVVASAMRPGPES(ph)PSTRR ddPTM_HeLa_A485_30min_R1 3 AAEVVASAMRPGPESPSTRR 20 2 A0A1B0GV70;Q96N21-2 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 AAEVVASAMRPGPES(0.997)PS(0.001)T(0.002)RR;AAEVVASAMRPGPES(0.968)PS(0.016)T(0.016)RR;AAEVVASAMRPGPES(0.916)PS(0.035)T(0.049)RR ;; 134.28 1.34E-07 478531000 393853 540520 486730 397161 611150 534570 638600 734830 418762 565579 TRUE FALSE FALSE 481464.2411 603729.1121 666791.6815 418856.8998 550301.7601 562559.2586 502157.8931 554611.7903 502803.6923 424590.564 1.133949461 1.421908924 1.570434527 0.986496016 1.296076283 1.324945268 1.18268736 1.30622731 1.184208352 1 18.69571278 -13.85225924 0.161116286 8.70E-12 1.349685429 0.238368374 0.150281377 184.7465357 1.777865963 58.85566895 0.63713032 1.41E-14 13.85225924 1.349685429 AAEVVASAMRPGPES(ph)PSTRR ddPTM_HeLa_A486_30min_R1 2 AAEVVASAMRPGPESPSTRR 20 2 A0A1B0GV70;Q96N21-2 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 AAEVVASAMRPGPES(0.994)PS(0.003)T(0.004)RR;AAEVVASAMRPGPES(0.969)PS(0.013)T(0.019)RR ; 152.35 4.88E-10 500150000 543590 501090 428710 203682 641920 469030 563560 621400 406840 644630 TRUE FALSE FALSE 505487.1481 461381.8035 594717.9933 474181.9895 561404.4079 411165.8473 422551.3273 479920.7851 442105.2188 483210.4522 1.046101436 0.954825794 1.230763926 0.981315672 1.161821739 0.850904291 0.874466447 0.993192061 0.914933062 1 18.88229214 -6.265659496 24.99297566 0.923009132 1.07174395 0.42438102 0.086243842 357.8661065 2119398.572 0.029076574 0.026539493 5.42E-07 6.265659496 0.148734818 AAFAHFPELY(ph)DFALS(ph)NVAEVDT(ph)RES(ph)LVK ddPTM_HeLa_A485_30min_R1 1 AAFAHFPELYDFALSNVAEVDTRESLVK 28 1 H0YH15;O60306 H0YH15 AQR Intron-binding protein aquarius 4 0 AAFAHFPELY(1)DFALS(1)NVAEVDT(1)RES(1)LVK 46.01 0.023022 243250000 36800 33060 31049 25263 62073 34736 40854 34766 39227 39712 TRUE FALSE FALSE 44986.03304 36926.07942 42535.31716 26643.05372 55892.79417 36554.72325 32125.20915 26239.58399 47099.49909 29812.52925 1.508963989 1.238609415 1.426759763 0.89368646 1.874808867 1.226153036 1.077574093 0.880152897 1.579855862 1 14.86363116 -7.883852788 0.039270856 3.40E-06 2.370819047 0.105452841 0.291502239 197.8884998 5.838470119 181.3382827 167.1146276 1.31E-08 7.883852788 2.37081565 AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR ddPTM_HeLa_A485_30min_R1 4 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 M0QZ22;Q5PRF9;M0R0X3;A0A087WZT0 M0QZ22 SAMD4B Protein Smaug homolog 2 1 0 AAFTTPDHAPLS(0.996)PQS(0.003)S(0.001)VASSGSEQTEEQGSSR;AAFTTPDHAPLS(0.999)PQS(0.001)SVASSGSEQTEEQGSSR;AAFTTPDHAPLS(1)PQSSVASSGSEQTEEQGSSR;AAFTTPDHAPLS(1)PQSSVASSGSEQTEEQGSSR ;;; 342.84 1.51E-128 2583100000 371570 611700 657290 396119 645120 547230 617550 714780 535100 596100 TRUE FALSE FALSE 454224.4646 683232.9939 900448.9231 417757.9779 580889.5876 575882.1166 485605.3976 539479.0843 642489.6618 447503.2404 1.015019387 1.526766585 2.012161794 0.933530621 1.298067891 1.286878093 1.085143869 1.205531124 1.435720692 1 18.7715386 -5.292854912 24.99979348 1.192093278 1.518861517 0.258678385 0.263098306 925.5422864 736524.3369 0.074340879 0.110277449 5.10E-06 5.292854912 0.326768239 AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR ddPTM_HeLa_A486_30min_R1 4 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 M0QZ22;Q5PRF9;M0R0X3;A0A087WZT0 M0QZ22 SAMD4B Protein Smaug homolog 2 1 0 AAFTTPDHAPLS(0.999)PQS(0.001)SVASSGSEQTEEQGSSR;AAFTTPDHAPLS(1)PQSSVASSGSEQTEEQGSSR;AAFTTPDHAPLS(1)PQSSVASSGSEQTEEQGSSR;AAFTTPDHAPLS(0.994)PQS(0.006)SVASSGSEQTEEQGSSR ;;; 372.51 7.44E-170 2303730000 495105 546994 521585 133843 659077 471067 557794 541896 493389 543879 TRUE FALSE FALSE 460400.6962 503648.2033 723556.6805 311593.2681 576409.417 412951.543 418228.0415 418518.1103 536156.3558 407688.1583 1.12929622 1.235376091 1.774779732 0.764293153 1.413848809 1.01291032 1.025852807 1.026564303 1.31511388 1 18.63710653 -5.272365082 24.99857683 1.089788608 1.365373247 0.263721271 0.228918451 1012.50335 2316659.24 0.062656562 0.093949994 5.34E-06 5.272365082 0.275584639 AAGAGAAK(ac)R ddPTM_HeLa_A485_30min_R1 2 AAGAGAAKR 9 1 P16401 P16401 HIST1H1B Histone H1.5 0 1 ; AAGAGAAK(1)R;AAGAGAAK(1)R 162.31 1.95E-06 24370000 32031 47106 47213 47093 53971 36161 43805 95858 61420 124888 FALSE TRUE FALSE 39156.18544 52614.63693 64679.0534 49665.57134 48597.45774 38054.33404 34445.7039 72348.6752 73746.43062 93755.71999 0.417640496 0.561188554 0.689867812 0.529733774 0.518341257 0.405888132 0.367398425 0.77167212 0.786580601 1 16.51661909 -7.646686529 2.009409853 0.947899429 0.508792163 0.720459962 0.101738399 0.185845524 1.37664953 0.098437156 0.029902759 2.26E-08 7.646686529 -0.439107267 AAGAGAAK(ac)R ddPTM_HeLa_A486_30min_R1 2 AAGAGAAKR 9 1 P16401 P16401 HIST1H1B Histone H1.5 0 1 ; AAGAGAAK(1)R;AAGAGAAK(1)R 89.369 0.001576 0 8235.8 8720.8 10206.8 3219.1 10834 11194.3 10067.8 8281.5 8772.3 9100.9 FALSE TRUE FALSE 7658.51295 8029.732047 14159.14631 7494.227484 9475.098697 9813.261081 7548.729954 6395.983234 9532.690027 6821.975403 1.122623946 1.177039138 2.075519988 1.098542144 1.388908364 1.438477934 1.106531394 0.937555892 1.397350395 1 12.73597384 -6.767287312 24.46514035 1.105155641 1.39287929 0.182584467 0.282644597 190.3129664 796171.535 0.116287643 0.08081519 1.71E-07 6.767287312 0.287723649 AAGALLTEGEACHMSLS(ph)SPELGPLTK ddPTM_HeLa_A485_30min_R1 1 AAGALLTEGEACHMSLSSPELGPLTK 26 0 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 AAGALLTEGEACHMSLS(0.61)S(0.39)PELGPLTK 140.46 4.15E-07 103910000 68377 137570 138940 26944 172290 88347 118380 122300 124340 74456 TRUE FALSE FALSE 83587.22775 153657.6148 190339.6878 28415.88249 155136.2027 92972.71231 93087.14592 92305.73324 149293.8975 55895.48946 1.495419909 2.749016357 3.405278129 0.508375233 2.775469079 1.663331213 1.665378492 1.651398604 2.670947136 1 15.77044425 -5.240485356 24.9998389 1.773344677 2.56981574 0.198102725 0.77014426 1391.474198 1660138.792 0.200984967 0.347651345 5.75E-06 5.240485356 0.796471063 AAGALLTEGEACHMSLSS(ph)PELGPLTK ddPTM_HeLa_A485_30min_R1 1 AAGALLTEGEACHMSLSSPELGPLTK 26 0 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 AAGALLTEGEACHMSLS(0.289)S(0.711)PELGPLTK 190.15 1.36E-20 110090000 90787 163580 159160 23367 205340 102890 130440 146990 123680 87693 TRUE FALSE FALSE 110982.2549 182709.258 218039.9072 24643.48004 184895.6286 108277.1613 102570.4284 110940.472 148501.4415 65832.74897 1.685821368 2.775355137 3.312027989 0.374334665 2.808566124 1.644730974 1.558045654 1.685186685 2.255738122 1 16.00651782 -7.576752207 0.091586592 4.33E-11 3.455714129 0.143023315 0.781290232 23.45696217 2.117844388 38.5450004 36.38989167 2.65E-08 7.576752207 3.455714129 AAGALLTEGEACHMSLSS(ph)PELGPLTK ddPTM_HeLa_A486_30min_R1 1 AAGALLTEGEACHMSLSSPELGPLTK 26 0 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 AAGALLT(0.001)EGEACHMS(0.058)LS(0.322)S(0.619)PELGPLTK 86.869 0.0034464 84451000 97681 116080 126450 7140.7 155410 68043 92608 80734 114220 29182 TRUE FALSE FALSE 90834.06633 106881.398 175414.8264 16623.91047 135917.0287 59648.54647 69436.49889 62352.63061 124120.6816 21874.63726 4.152483319 4.886087791 8.019096472 0.759962795 6.213452916 2.726835914 3.174292587 2.850453239 5.674182392 1 14.41697147 -5.258170835 24.99987669 3.381773963 5.605908833 0.266513118 1.871594144 419.0324248 3205008.615 0.490788782 0.807064795 5.52E-06 5.258170835 2.224134871 AAGARPLTS(ph)PESLSR ddPTM_HeLa_A485_30min_R1 4 AAGARPLTSPESLSR 15 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AAGARPLT(0.006)S(0.994)PESLSR;AAGARPLT(0.066)S(0.931)PES(0.004)LSR;AAGARPLT(0.001)S(0.999)PESLSR;AAGARPLT(0.013)S(0.986)PES(0.001)LSR ;;; 182.49 4.26E-18 5061120000 1384400 2095570 2111940 1414490 2378290 1953260 2059040 2517790 1841950 1804090 TRUE FALSE FALSE 1692355.004 2340628.682 2893234.491 1491760.007 2141499.097 2055529.673 1619109.283 1900298.055 2211612.47 1354363.565 1.249557392 1.728212973 2.136231782 1.101447237 1.581184811 1.517708927 1.195476108 1.403093013 1.632953313 1 20.36918364 -5.279128762 24.99977521 1.374710565 1.707022027 0.254026708 0.27779939 1172.777301 1657441.579 0.077591015 0.115356729 5.26E-06 5.279128762 0.332311462 AAGARPLTS(ph)PESLSR ddPTM_HeLa_A486_30min_R1 6 AAGARPLTSPESLSR 15 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AAGARPLT(0.105)S(0.895)PESLSR;AAGARPLT(0.037)S(0.963)PESLSR;AAGARPLT(0.002)S(0.998)PESLSR;AAGARPLT(0.033)S(0.967)PESLSR;AAGARPLTS(0.996)PES(0.004)LSR;AAGARPLT(0.031)S(0.969)PESLSR ;;;;; 181.94 4.42E-18 3629550000 1807350 1999360 1841440 601504 2417730 1757050 1985110 2032360 1543236 1853230 TRUE FALSE FALSE 1680664.098 1840923.432 2554494.883 1400331.71 2114475.759 1540283.035 1488414.482 1569635.994 1677004.939 1389169.145 1.209834025 1.325197466 1.838865261 1.008035425 1.522115407 1.108780051 1.071442226 1.129909917 1.207199962 1 20.40579084 -6.282064022 23.63224511 1.109584218 1.382457816 0.311550169 0.206031063 521.1526179 597147.3804 0.071157977 0.062844613 5.22E-07 6.282064022 0.272873598 AAGARPLTSPES(ph)LSR ddPTM_HeLa_A485_30min_R1 1 AAGARPLTSPESLSR 15 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AAGARPLT(0.004)S(0.078)PES(0.546)LS(0.372)R 128.74 0.00028667 441370000 58062 85344 76465 86916 93232 80102 99402 112850 74181 116620 TRUE FALSE FALSE 70977.69159 95324.23841 104752.5855 91664.001 83949.49472 84296.01686 78163.95066 85173.36056 89068.44627 87548.78023 0.81072165 1.088812867 1.196505368 1.04700489 0.958888228 0.962846274 0.892804565 0.972867473 1.017357935 1 16.41779946 -5.752964834 8.958876955 0.962096859 1.05115601 0.100909429 0.094756058 0.275774515 190.8816425 0.029461846 0.036412334 1.77E-06 5.752964834 0.089059151 AAGDGGSGPPEK(ac)K ddPTM_HeLa_A485_30min_R1 2 AAGDGGSGPPEKK 13 1 H3BQ99;H3BUL6;I3L332;H3BP71;O75150-3;O75150-4;O75150 H3BQ99 RNF40 E3 ubiquitin-protein ligase BRE1B 0 1 ; AAGDGGSGPPEK(1)K;AAGDGGSGPPEK(1)K 234.65 5.48E-29 62858000 34837 35838 30026 47103 46214 52223 71742 82311 55935 102923 FALSE TRUE FALSE 42586.37046 40028.94235 41133.86689 49676.11762 41612.77189 54957.31553 56413.73562 62124.09819 67160.64143 77266.19026 0.551164362 0.518065434 0.532365667 0.642921794 0.538563785 0.71127249 0.730121874 0.804026936 0.869211245 1 16.23754964 -7.186624391 0.508968466 1.004166037 0.5178425 0.946548686 0.035974129 0.173608158 0.10209044 0.035165064 0.024328706 6.51E-08 7.186624391 -0.486323537 AAGDGGSGPPEK(ac)K ddPTM_HeLa_A486_30min_R1 2 AAGDGGSGPPEKK 13 1 H3BQ99;H3BUL6;I3L332;H3BP71;O75150-3;O75150-4;O75150 H3BQ99 RNF40 E3 ubiquitin-protein ligase BRE1B 0 1 ; AAGDGGSGPPEK(1)K;AAGDGGSGPPEK(1)K 184.03 2.32E-09 75661000 31201 39497 21657 20464.6 38766 41831 47771 47680 30797 54230 FALSE TRUE FALSE 29013.97102 36367.11387 30043.17039 47642.62302 33903.6068 36670.31653 35818.19053 36824.30485 33466.50876 40650.45502 0.713742835 0.894629934 0.73906111 1.172007128 0.834027732 0.90208871 0.881126435 0.905876818 0.823275133 1 15.31098388 -3.875012753 1.196499708 0.912052175 0.44957527 0.227148166 0.10889877 5.327415001 3.488164777 0.031468913 3.817695182 0.000133348 3.875012753 -0.462476904 AAGFKT(ph)SPGRPLGTTK ddPTM_HeLa_A485_30min_R1 1 AAGFKTSPGRPLGTTK 16 2 Q7Z6I8;Q7Z6I8-2 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 1 0 AAGFKT(0.5)S(0.5)PGRPLGTTK 64.83 0.015731 536440000 156390 178650 110920 151300 208250 261810 337090 462060 185360 264150 TRUE FALSE FALSE 191178.416 199541.5635 151953.9238 159565.1359 187515.8988 275517.9668 265067.9677 348739.0605 222560.0518 198302.2663 0.9640758 1.006249536 0.766274267 0.804656139 0.945606433 1.389383853 1.336686527 1.758623676 1.122327323 1 17.59734164 -6.223033256 4.722441468 1.371399945 0.885706569 0.526493744 0.198587126 0.146973783 7.991811492 0.065948441 0.064247451 5.98E-07 6.223033256 -0.485693376 AAGFKTS(ph)PGRPLGTTK ddPTM_HeLa_A486_30min_R1 1 AAGFKTSPGRPLGTTK 16 2 Q7Z6I8;Q7Z6I8-2 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 1 0 AAGFKT(0.205)S(0.795)PGRPLGTTK 94.45 0.00036465 534890000 516890 363480 213930 206550 479910 406460 566140 591290 280780 631140 TRUE FALSE FALSE 480658.6802 334676.521 296769.4252 480858.8385 419715.2128 356315.0978 424485.784 456666.1748 305118.2365 473098.436 1.015980277 0.707414135 0.627288959 1.016403357 0.887162546 0.753152136 0.897246221 0.965266718 0.64493605 1 18.85178087 -10.70912641 2.755249705 1.025979187 0.835249567 0.113468511 0.138373417 69161494.15 61665106.82 12489737.91 0.034552652 1.95E-11 10.70912641 -0.19072962 AAGGAPS(ph)PPPPVR ddPTM_HeLa_A485_30min_R1 3 AAGGAPSPPPPVR 13 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR ;; 148.68 7.09E-08 1924950000 488520 497370 514050 545780 610570 462650 628020 604120 525160 850310 TRUE FALSE FALSE 597189.5886 555533.095 704218.4864 575594.5794 549779.507 486873.6386 493838.3965 455958.6228 630554.7949 638343.3658 0.935530344 0.870273155 1.103197 0.901700574 0.861259843 0.762714339 0.773625016 0.714284266 0.987798775 1 19.28397313 -5.684300807 3.23104363 0.825821047 0.9642406 0.188505521 0.103164742 0.333364085 6.973993131 0.031628787 0.041134751 2.07E-06 5.684300807 0.138419553 AAGGAPS(ph)PPPPVR ddPTM_HeLa_A486_30min_R1 4 AAGGAPSPPPPVR 13 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR ;;; 198.74 2.12E-21 2986480000 971680 1114980 856060 317825 1083040 1071450 1096490 1119500 981560 1028860 TRUE FALSE FALSE 903570.2498 1026624.924 1187549.358 739912.662 947195.0243 939265.3927 822136.6045 864614.2885 1066642.411 771226.7592 1.171601269 1.331158329 1.539818664 0.95939703 1.228166701 1.217884859 1.066011513 1.121089586 1.383046424 1 19.55679558 -5.262318089 24.99999966 1.148330879 1.345889302 0.31164105 0.14132285 100.0933524 2847771.121 0.03870151 0.061431875 5.47E-06 5.262318089 0.197558422 AAGGAPS(ph)PPPPVRR ddPTM_HeLa_A485_30min_R1 6 AAGGAPSPPPPVRR 14 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR ;;;;; 84.41 0.0014801 10292910000 1393050 1791580 1590720 1387690 1976480 1816990 2053280 2210400 1482640 2076450 TRUE FALSE FALSE 1702929.167 2001089.696 2179193.523 1463495.991 1779694.711 1912124.787 1614579.954 1668295.934 1780192.248 1558829.229 1.092441131 1.283713225 1.397968092 0.938843052 1.141686772 1.226641604 1.035764485 1.070223667 1.142005946 1 20.57203146 -6.157876139 0.288279152 1.010066421 1.275381223 0.186371205 0.118392315 4.783658412 0.800751428 0.181117912 0.43930199 6.95E-07 6.157876139 0.265314802 AAGGAPS(ph)PPPPVRR ddPTM_HeLa_A486_30min_R1 6 AAGGAPSPPPPVRR 14 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR ;;;;; 75.376 0.004412 8842020000 1554494 1646870 1432542 546605 2032750 1513594 1640630 1689175 1449503 1701260 TRUE FALSE FALSE 1445531.998 1516366.023 1987260.627 1272524.064 1777783.54 1326862.161 1230127.021 1304586.727 1575147.087 1275253.423 1.133525284 1.189070342 1.558326049 0.997859752 1.394062944 1.040469398 0.964613777 1.023001941 1.235163975 1 20.28235254 -6.289445488 23.82893628 1.048585124 1.253543848 0.296601526 0.155408237 525.7567872 447336.8094 0.053443699 0.047145045 5.14E-07 6.289445488 0.204958724 AAGGGAGS(ph)S(ph)EDDAQSR ddPTM_HeLa_A485_30min_R1 2 AAGGGAGSSEDDAQSR 16 0 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 2 0 AAGGGAGS(1)S(1)EDDAQSR;AAGGGAGS(1)S(1)EDDAQSR ; 270.99 4.58E-58 945960000 944050 1004160 1057490 1088860 1434720 1018690 1278450 1187870 1110020 1401610 TRUE FALSE FALSE 1154050.666 1121587.777 1448699.557 1148341.665 1291874.239 1072027.033 1005298.714 896543.02 1332790.832 1052214.422 1.096782787 1.065930816 1.376810208 1.091357086 1.227767091 1.018829443 0.955412407 0.852053537 1.266653265 1 20.0049973 -6.316698826 7.448255585 1.004702556 1.172668235 0.261395785 0.127676733 0.372762925 44.59630774 0.044316768 0.039150923 4.82E-07 6.316698826 0.167965679 AAGGGAGS(ph)S(ph)EDDAQSR ddPTM_HeLa_A486_30min_R1 2 AAGGGAGSSEDDAQSR 16 0 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 2 0 AAGGGAGS(1)S(1)EDDAQSR;AAGGGAGS(1)S(1)EDDAQSR ; 221.37 1.78E-33 898200000 977810 1228600 947230 392930 1253370 1153010 1247070 1226460 974340 1147500 TRUE FALSE FALSE 909270.5684 1131241.262 1314022.824 914760.8976 1096160.647 1010763.349 935039.8958 947221.8314 1058796.576 860158.531 1.057096495 1.315154382 1.527651911 1.063479422 1.274370489 1.175089606 1.087055307 1.101217738 1.230931901 1 19.71424305 -6.209664272 1.158967248 1.110705709 1.275160756 0.188516552 0.135566492 0.81361934 2.265846679 0.069397428 0.065592746 6.17E-07 6.209664272 0.164455047 AAGGGAGS(ph)SEDDAQSRR ddPTM_HeLa_A485_30min_R1 1 AAGGGAGSSEDDAQSRR 17 1 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 1 0 AAGGGAGS(0.5)S(0.5)EDDAQSRR 45.704 0.035912 59632000 19153 33160 40141 14217 36211 25175 23993 47542 28266 27616 TRUE FALSE FALSE 23413.51877 37037.77355 54990.82631 14993.63871 32605.7057 26493.12407 18866.69955 35882.24996 33938.72693 20731.83943 1.129350767 1.786516515 2.652481777 0.723217964 1.572735782 1.277895488 0.910035002 1.73077985 1.637034043 1 14.3395605 -5.276990029 24.95756938 1.293605902 1.849156502 0.256454975 0.459703584 1141.642044 1832242.993 0.130677394 0.194584223 5.28E-06 5.276990029 0.555550599 AAGGGAGSS(ph)EDDAQSR ddPTM_HeLa_A485_30min_R1 1 AAGGGAGSSEDDAQSR 16 0 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 1 0 AAGGGAGS(0.26)S(0.74)EDDAQSR 113.65 1.15E-05 0 96816 122790 114610 108730 167200 134620 141430 167200 129320 153400 TRUE FALSE FALSE 118352.3852 137149.2224 157009.0083 114669.6446 150552.9809 141668.495 111212.3251 126193.9378 155273.3378 115160.2031 1.02771949 1.190942866 1.363396417 0.995740208 1.307335146 1.230186221 0.965718383 1.095812046 1.348324626 1 16.81328271 AAGGGAGSS(ph)EDDAQSRR ddPTM_HeLa_A485_30min_R1 1 AAGGGAGSSEDDAQSRR 17 1 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 1 0 AAGGGAGS(0.014)S(0.986)EDDAQSRR 212.9 4.95E-26 703320000 128820 247090 193740 100350 210960 226360 228080 290290 168720 140530 TRUE FALSE FALSE 157475.5646 275985.0261 265412.4882 105831.8664 189956.0817 238211.8596 179348.8448 219095.9223 202580.5564 105498.4573 1.492681207 2.616010066 2.515794971 1.003160322 1.80055791 2.257965337 1.700013909 2.076768969 1.920222927 1 16.68686238 -10.80550345 2.08082845 0.627975716 1.944700115 0.27403602 0.454362117 2374804.598 1229438.671 4437846.867 0.123187204 1.56E-11 10.80550345 1.316724399 AAGGGAGSS(ph)EDDAQSRR ddPTM_HeLa_A486_30min_R1 2 AAGGGAGSSEDDAQSRR 17 1 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 1 0 AAGGGAGS(0.035)S(0.965)EDDAQSRR;AAGGGAGS(0.002)S(0.998)EDDAQSRR ; 184.66 6.58E-18 1047680000 352810 393890 343330 144470 461980 322480 366130 400550 305470 408480 TRUE FALSE FALSE 328079.8409 362676.7219 476276.5707 336333.4611 404034.1606 282695.6963 274520.4015 309353.5089 331948.3856 306193.9492 1.071477218 1.184467305 1.55547349 1.098432748 1.319536724 0.923256965 0.896557238 1.010318818 1.084111513 1 18.22408625 -6.263120712 24.99973326 0.978100597 1.251474226 0.489955034 0.13407896 133.6287869 1986912.705 0.046852554 0.043468779 5.46E-07 6.263120712 0.273373629 AAGISLIVPGKS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 AAGISLIVPGKSPTR 15 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 AAGISLIVPGKS(0.938)PT(0.062)R;AAGISLIVPGKS(0.805)PT(0.195)R ; 177.44 2.01E-13 6016700000 2713900 3052100 2655000 3199800 3535100 3365400 4701600 4553200 2685200 4365900 TRUE FALSE FALSE 3317597.692 3409016.545 3637194.984 3374596.972 3183133.032 3541607.14 3697064.751 3436520.561 3224095.01 3277561.478 1.012215244 1.040107582 1.109725937 1.029606002 0.97118942 1.08056162 1.127992496 1.048499192 0.98368712 1 21.64419141 -7.7334527 7.66050134 0.991775539 1.054080843 0.237541495 0.043402536 0.256460126 56.10825901 0.033303572 0.011870631 1.85E-08 7.7334527 0.062305304 AAGISLIVPGKS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 AAGISLIVPGKSPTR 15 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 AAGISLIVPGKS(0.832)PT(0.168)R;AAGISLIVPGKS(0.912)PT(0.088)R ; 108.75 0.00012548 5191500000 3010000 2803400 1896420 1046940 2944800 2869700 3411300 3206200 2219300 3743600 TRUE FALSE FALSE 2799014.544 2581248.374 2630764.612 2437329.229 2575435.725 2515665.591 2557756.659 2476218.251 2411670.711 2806178.193 0.997447186 0.919844784 0.93749022 0.868558253 0.917773408 0.896473929 0.911473357 0.882416611 0.859414672 1 21.42017519 -3.268447459 1.025728459 0.901677761 1.53471405 0.320864963 0.037815334 12.67150667 2.294207043 0.011041571 14.18616083 0.000538955 3.268447459 0.633036288 AAGISLIVPGKS(ph)PTRK ddPTM_HeLa_A486_30min_R1 1 AAGISLIVPGKSPTRK 16 2 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 AAGISLIVPGKS(0.932)PT(0.068)RK 114.55 6.18E-05 359250000 460760 446460 229690 196030 470190 509700 546340 560050 364670 698410 TRUE FALSE FALSE 428463.1034 411080.8836 318632.1193 456367.7468 411214.3859 446818.3962 409639.9534 432538.8408 396279.8892 523523.5901 0.81842177 0.785219408 0.608629917 0.871723367 0.785474415 0.853482832 0.782467039 0.826206973 0.756947531 1 18.99789502 -14 0.247176311 2.258062716 0.768259987 0.46086389 0.068667609 163.0175438 1.621151503 103.5084794 0.102406684 1.00E-14 14 -1.489802729 AAGISLIVPGKSPT(ph)R ddPTM_HeLa_A485_30min_R1 1 AAGISLIVPGKSPTR 15 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 AAGISLIVPGKS(0.38)PT(0.62)R 89.629 0.0027505 548560000 67913 83781 79411 89510 101080 110480 112270 128870 80057 145960 TRUE FALSE FALSE 83020.01255 93578.45915 108788.4335 94399.70465 91016.12029 116264.562 88282.59734 97264.43044 96123.70557 109574.8582 0.75765567 0.854013965 0.992822946 0.861508801 0.830629597 1.061051448 0.805682971 0.887652807 0.877242345 1 16.74155729 -4.391696568 3.712954014 0.907791986 0.758053462 0.276331919 0.077162279 0.319487475 7.056757091 0.01888886 0.100148871 4.06E-05 4.391696568 -0.149738524 AAGMS(ph)SPGAQSHPEELPR ddPTM_HeLa_A485_30min_R1 2 AAGMSSPGAQSHPEELPR 18 0 M0R0P8;M0QZY4;M0R2J3;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 AAGMS(0.5)S(0.5)PGAQSHPEELPR;AAGMS(0.5)S(0.5)PGAQSHPEELPR ; 212.55 4.96E-26 1656280000 599130 788430 753020 599560 940790 757100 838050 889370 657940 828510 TRUE FALSE FALSE 732404.4015 880630.0301 1031593.434 632312.4446 847121.6443 796740.5853 658993.7713 671250.613 789982.523 621977.7046 1.177541246 1.415854658 1.658569795 1.016615933 1.361980724 1.280979333 1.059513494 1.079219734 1.270113892 1 19.24650334 -6.269482293 0.812522488 1.097861854 1.377572274 0.268123152 0.169549346 0.870539642 1.247073105 0.114866518 0.108441948 5.38E-07 6.269482293 0.279710421 AAGMS(ph)SPGAQSHPEELPR ddPTM_HeLa_A486_30min_R1 2 AAGMSSPGAQSHPEELPR 18 0 M0R0P8;M0QZY4;M0R2J3;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 AAGMS(0.5)S(0.5)PGAQSHPEELPR;AAGMS(0.5)S(0.5)PGAQSHPEELPR ; 195.36 7.32E-19 1482840000 693860 772390 681630 165454 1007400 690450 746130 784430 718430 689810 TRUE FALSE FALSE 645223.9971 711183.0034 945575.3907 385185.2736 881042.4984 605269.299 559440.3822 605832.413 780704.0909 517077.0861 1.247829414 1.375390677 1.828693276 0.744928143 1.703890043 1.17055912 1.081928396 1.171648153 1.509840818 1 18.98001985 -5.873059626 0.889191295 1.203612818 1.407804923 0.060847226 0.30201692 1.933050821 3.341828665 0.15660074 0.222974624 1.34E-06 5.873059626 0.204192105 AAGVNVEPFWPGLFAK ddPTM_HeLa_A485_30min_R1 2 AAGVNVEPFWPGLFAK 16 0 P05386 P05386 RPLP1 60S acidic ribosomal protein P1 0 0 ; ; 267.43 1.30E-53 92053000 129471 147200 143585 136632 192097 183738 219910 247980 151584 197707 FALSE FALSE TRUE 158271.3773 164413.7595 196703.0666 144095.8602 172971.1482 193358.2376 172924.432 187162.5162 182005.5184 148422.2834 1.066358593 1.107743094 1.325293359 0.970850582 1.165398781 1.302757464 1.165084029 1.261013588 1.226268146 1 17.17934818 -6.000743935 24.99998835 1.208867981 1.123751429 0.076114434 0.11177122 62.38725473 2096653.205 0.033654176 0.037715998 9.98E-07 6.000743935 -0.085116553 AAGVNVEPFWPGLFAK ddPTM_HeLa_A486_30min_R1 2 AAGVNVEPFWPGLFAK 16 0 P05386 P05386 RPLP1 60S acidic ribosomal protein P1 0 0 ; ; 256.95 3.44E-42 105151000 150907 185192 154766 68805 229860 196715 216010 214988 185860 226100 FALSE FALSE TRUE 140329.1986 170516.7115 214695.54 160181.5172 201028.8154 172446.3034 161962.0133 166039.9256 201970.4944 169483.0883 0.827983488 1.00609868 1.266766744 0.945117998 1.186129055 1.017483839 0.955623448 0.979684328 1.191685238 1 17.3707818 -4.319694099 4.142633053 1.064870186 0.819905097 0.312921944 0.106053315 0.235810404 7.548575188 0.026023016 0.146110464 4.79E-05 4.319694099 -0.244965089 AAGYKVS(ph)PGRPPGSIK ddPTM_HeLa_A486_30min_R1 2 AAGYKVSPGRPPGSIK 16 2 Q7Z6I8 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 1 0 AAGYKVS(1)PGRPPGSIK;AAGYKVS(0.999)PGRPPGS(0.001)IK ; 112.58 7.36E-05 1514930000 2145030 1923590 874580 913710 1947380 2104790 2508400 2390960 1416930 2686790 TRUE FALSE FALSE 1994674.474 1771157.723 1213240.798 2127163.056 1703121.442 1845122.41 1880771.789 1846590.602 1539750.633 2014000.296 0.990404261 0.879422772 0.602403485 1.056188056 0.845641108 0.916148033 0.933848815 0.916877026 0.764523539 1 20.94163246 AAHLCAEAALR ddPTM_HeLa_A485_30min_R1 2 AAHLCAEAALR 11 0 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3;H0YIN7 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ; ; 182.28 1.83E-09 103904000 60755 82179 85616 58380 98914 80088 90854 98042 77050 81282 FALSE FALSE TRUE 74269.74015 91789.11919 117288.9212 61569.15157 89065.77485 84281.28384 71442.30069 73997.04578 92513.22826 61019.89328 1.217139791 1.504249094 1.922142352 1.009001299 1.45961866 1.381209951 1.170803435 1.212670849 1.516115864 1 15.89699204 -5.277454753 24.99977682 1.269690148 1.543484343 0.263048069 0.226799154 1151.309595 1797175.537 0.063174444 0.09401696 5.28E-06 5.277454753 0.273794195 AAHLCAEAALR ddPTM_HeLa_A486_30min_R1 2 AAHLCAEAALR 11 0 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3;H0YIN7 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ; ; 126.71 0.0081472 21437000 29088 37371 43106 10682.8 53289 37320 40562 39729 36140 32179 FALSE FALSE TRUE 27049.08141 34409.58586 59797.79762 24870.09828 46604.99672 32715.83784 30412.95858 30683.57398 39272.6443 24121.16895 1.121383523 1.42653061 2.479058861 1.031048633 1.932120156 1.356312288 1.260840992 1.272059992 1.628140178 1 14.5580122 -6.490378455 23.39585411 1.312309612 1.609774888 0.115470036 0.408429315 691.6832043 497919.6426 0.141463574 0.124618626 3.23E-07 6.490378455 0.297465276 AAHSRNS(ph)MDRPK ddPTM_HeLa_A485_30min_R1 3 AAHSRNSMDRPK 12 2 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AAHS(0.003)RNS(0.997)MDRPK;AAHS(0.001)RNS(0.999)MDRPK;AAHS(0.151)RNS(0.849)MDRPK ;; 123.38 2.11E-05 931635000 117286.8 187387 102408.7 112716.9 203535 216646 238847 392288 171876 169433 TRUE FALSE FALSE 143376.844 209300.2796 140293.9397 118874.3388 183270.3407 227989.2496 187815.3872 296078.7529 206369.9367 127196.4713 1.127207717 1.645488098 1.102970376 0.934572615 1.440844537 1.792418038 1.476577026 2.327727726 1.622450172 1 16.95669912 -6.037805449 4.993778969 1.710653847 1.221478112 0.2469317 0.352404117 0.255240491 15.69267455 0.114420516 0.118680566 9.17E-07 6.037805449 -0.489175735 AAHSRNS(ph)MDRPK ddPTM_HeLa_A486_30min_R1 3 AAHSRNSMDRPK 12 2 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AAHS(0.002)RNS(0.998)MDRPK;AAHS(0.009)RNS(0.991)MDRPK;AAHS(0.12)RNS(0.88)MDRPK ;; 110.77 0.00018218 350010300 81328 50416 56253 36728.8 75646.7 74802.1 83336 81577 45368.8 101975 TRUE FALSE FALSE 75627.32718 46420.85255 78035.66811 85506.50257 66158.38551 65573.77743 62484.45136 63003.69791 49301.40411 76439.79625 0.989371125 0.607286451 1.0208775 1.118612382 0.865496623 0.857848668 0.817433515 0.824226398 0.644970376 1 16.22203631 -6.394067357 2.358007743 0.808516099 0.92042596 0.09127505 0.147739116 0.775246772 8.454552321 0.061745294 0.052276401 4.04E-07 6.394067357 0.111909861 AAHTEDINACTLTT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 AAHTEDINACTLTTSPR 17 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACTLT(0.004)T(0.698)S(0.298)PR 249.52 7.26E-43 452680000 150500 162300 195850 173830 182480 179100 203570 173130 169780 214170 TRUE FALSE FALSE 183978.2058 181279.5732 268303.065 183325.8927 164311.6505 188477.3991 160075.6065 130669.596 203853.2887 160781.3605 1.144275712 1.127491225 1.668744836 1.140218569 1.021957085 1.172259014 0.995610474 0.812716074 1.267891303 1 17.29474064 -5.512683349 24.6961049 1.043366464 1.313165827 0.314401629 0.177279243 498.6995173 1207991.082 0.051450398 0.070864091 3.07E-06 5.512683349 0.269799362 AAHTEDINACTLTT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 AAHTEDINACTLTTSPR 17 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACTLT(0.004)T(0.703)S(0.293)PR 264.03 1.18E-51 482140000 230720 265210 233560 73077 254160 239780 225160 221530 213890 244580 TRUE FALSE FALSE 214547.7194 244193.7937 324000.687 170126.9491 222280.8829 210198.3815 168822.5865 171092.455 232430.1574 183335.5761 1.170245972 1.331949854 1.767254855 0.927953825 1.212426348 1.146522601 0.920839207 0.933220156 1.26778535 1 17.48412724 -5.286924602 24.97511962 1.059968776 1.414030311 0.464883522 0.179249763 659.5936956 646390.0825 0.050999128 0.075675726 5.17E-06 5.286924602 0.354061536 AAHTEDINACTLTT(ph)SPRLPVF ddPTM_HeLa_A485_30min_R1 1 AAHTEDINACTLTTSPRLPVF 21 1 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACT(0.002)LT(0.309)T(0.412)S(0.277)PRLPVF 109.89 0.00010404 166100000 33754 60599 55757 29962 82239 71120 85837 123630 60168 50210 TRUE FALSE FALSE 41262.46085 67685.52591 76383.83454 31598.74819 74050.9964 74843.73323 67497.22373 93309.54866 72243.16571 37693.57105 1.094681658 1.795678256 2.026441975 0.838306038 1.964552425 1.985583513 1.790682651 2.475476482 1.916591177 1 15.20203086 AAHTEDINACTLTTS(ph)PR ddPTM_HeLa_A485_30min_R1 3 AAHTEDINACTLTTSPR 17 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACTLT(0.001)T(0.067)S(0.932)PR;AAHTEDINACTLTT(0.017)S(0.983)PR;AAHTEDINACTLT(0.002)T(0.1)S(0.898)PR ;; 252.32 1.86E-44 1746990000 507420 583150 631050 535260 656340 500920 558740 531340 557000 618950 TRUE FALSE FALSE 620293.8284 651344.3198 864501.6552 564499.8985 590992.4851 527147.3966 439360.6345 401028.0319 668784.7909 464657.1559 1.334949479 1.401773999 1.860515101 1.214874002 1.271889344 1.134486771 0.945558739 0.86306221 1.439308063 1 18.8258071 -5.785745866 1.729662586 1.064410406 1.510088125 0.44874198 0.204504566 0.320869121 1.985594203 0.073762078 0.096265232 1.64E-06 5.785745866 0.445677719 AAHTEDINACTLTTS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AAHTEDINACTLTTSPR 17 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACTLTT(0.015)S(0.985)PR;AAHTEDINACTLT(0.001)T(0.026)S(0.973)PR ; 210.29 1.25E-25 1321160000 344012 443800 378710 134385 427780 342356 413500 381141 340894 406160 TRUE FALSE FALSE 319898.5353 408631.6717 525356.6542 312855.0714 374123.8435 300119.5975 310037.9264 294363.5145 370442.9664 304454.8923 1.050725554 1.342174759 1.725564829 1.027590882 1.228831768 0.985760469 1.018337804 0.966854276 1.21674171 1 18.21586897 AAHTEDINACTLTTS(ph)PRLPVF ddPTM_HeLa_A486_30min_R1 1 AAHTEDINACTLTTSPRLPVF 21 1 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACTLT(0.011)T(0.219)S(0.77)PRLPVF 137.86 1.81E-07 97496000 61664 63378 98906 38225 146720 59669 84061 111840 59792 66669 TRUE FALSE FALSE 57341.67203 58355.69646 137205.052 88989.73178 128317.0095 52307.64545 63028.04869 86376.47345 64974.8187 49974.64846 1.147415216 1.167705992 2.74549309 1.780697504 2.567642064 1.04668361 1.261200441 1.728405824 1.300155593 1 15.6089088 -6.293684038 24.99701922 1.312433922 1.884486905 0.262769013 0.511849729 1069.651689 829222.4949 0.188432099 0.166193541 5.09E-07 6.293684038 0.572052983 AAHVPENS(ph)DTEQDVLTVKPVR ddPTM_HeLa_A485_30min_R1 4 AAHVPENSDTEQDVLTVKPVR 21 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(0.994)DT(0.006)EQDVLTVKPVR ;;; 263.57 2.59E-59 4363210000 2701480 2755640 2519540 3285670 3530020 2980230 3540630 3672730 2990830 4423880 TRUE FALSE FALSE 3302414.906 3077888.127 3451622.693 3465157.832 3178558.814 3136270.234 2784145.476 2771987.209 3591062.147 3321088.131 0.994377377 0.926770987 1.039304757 1.04338027 0.957083549 0.944350198 0.838323274 0.834662345 1.081290832 1 21.66322458 -6.09375684 3.184327865 0.923066321 0.998379874 0.108383843 0.074501952 0.475977335 9.235705143 0.026221564 0.026881801 8.06E-07 6.09375684 0.075313553 AAHVPENS(ph)DTEQDVLTVKPVR ddPTM_HeLa_A486_30min_R1 5 AAHVPENSDTEQDVLTVKPVR 21 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 AAHVPENS(0.988)DT(0.012)EQDVLTVKPVR;AAHVPENS(0.993)DT(0.007)EQDVLTVKPVR;AAHVPENS(0.997)DT(0.003)EQDVLTVKPVR;AAHVPENS(0.99)DT(0.01)EQDVLTVKPVR;AAHVPENS(0.998)DT(0.002)EQDVLTVKPVR ;;;; 205.02 6.52E-27 3110723000 1176432 1297433 941733 458615 1363503 1275489 1428339 1390152 1107222 1343389 TRUE FALSE FALSE 1093970.192 1194619.684 1306397.238 1067678.897 1192479.74 1118132.135 1070953.475 1073644.736 1203196.894 1006995.65 1.086370325 1.1863206 1.29732163 1.060261677 1.184195522 1.110364414 1.063513506 1.066186071 1.194838224 1 19.94162602 -6.1531753 1.251289622 1.085741594 1.175625681 0.198187238 0.075237518 0.757562212 2.44001886 0.035300153 0.034989996 7.03E-07 6.1531753 0.089884087 AAHVPENS(ph)DTEQDVLTVKPVRK ddPTM_HeLa_A485_30min_R1 2 AAHVPENSDTEQDVLTVKPVRK 22 2 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 AAHVPENS(0.998)DT(0.002)EQDVLTVKPVRK;AAHVPENS(0.993)DT(0.007)EQDVLTVKPVRK ; 241.29 3.74E-47 3240100000 1206750 1552780 816400 1154970 1523990 1935770 2264410 2799880 1275930 1778650 TRUE FALSE FALSE 1475187.374 1734364.114 1118420.333 1218063.087 1372256.205 2037123.924 1780600.305 2113205.04 1531997.447 1335265.289 1.104789727 1.298891036 0.837601593 0.912225531 1.027703046 1.525632353 1.333518006 1.58261063 1.147335635 1 20.34869497 -6.241126117 24.21232993 1.355213649 1.032908336 0.335128087 0.19474664 566.2012928 674881.9423 0.063727421 0.063643206 5.74E-07 6.241126117 -0.322305313 AAHVPENS(ph)DTEQDVLTVKPVRK ddPTM_HeLa_A486_30min_R1 3 AAHVPENSDTEQDVLTVKPVRK 22 2 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 AAHVPENS(1)DTEQDVLTVKPVRK;AAHVPENS(0.999)DT(0.001)EQDVLTVKPVRK;AAHVPENS(0.999)DT(0.001)EQDVLTVKPVRK ;; 250.71 6.71E-48 3598870000 2708030 2408150 1412720 1156360 2712180 2427850 3169620 3147960 1790840 3399330 TRUE FALSE FALSE 2518211.081 2217319.424 1959763.018 2692064.519 2371993.094 2128326.552 2376547.551 2431238.227 1946071.453 2548115.642 0.988264049 0.870180061 0.769102856 1.056492286 0.930881258 0.835255087 0.93266864 0.954131825 0.763729644 1 21.28099932 -4.24793765 23.16677668 0.900495531 0.98826421 0.078003767 0.0895632 2244.738715 3851417.579 0.021792803 0.376592109 5.65E-05 4.24793765 0.08776868 AAIAFLHALWQDR ddPTM_HeLa_A486_30min_R1 1 AAIAFLHALWQDR 13 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 0 0 128.67 0.00012587 4458200 5694.7 7963.7 7019.9 2324.9 6828.5 7495.9 7988.1 6610.6 6281.7 6355.7 FALSE FALSE TRUE 5295.530937 7332.627409 9738.193279 5412.484694 5972.005857 6571.132071 5989.39289 5105.510688 6826.202814 4764.191351 1.111527759 1.539112699 2.044039074 1.13607626 1.25351931 1.379275429 1.257168835 1.071642659 1.432814577 1 12.21801564 AAIAFLHALWQDRR ddPTM_HeLa_A485_30min_R1 2 AAIAFLHALWQDRR 14 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 0 0 ; ; 191.06 1.50E-11 116094000 45542 58155 67516 53027 71628 46650 63764 61072 49198 73491 FALSE FALSE TRUE 55672.66078 64955.72137 92492.97798 55923.73074 64496.46482 49092.52187 50140.3005 46093.99624 59071.58733 55171.0462 1.00909199 1.177351634 1.676476782 1.013642745 1.169027402 0.889824015 0.908815474 0.835474391 1.07069906 1 15.75162372 -5.908165183 1.835211581 0.931738584 1.264192332 0.347602263 0.183142815 0.37055939 2.554179765 0.068049074 0.080166709 1.24E-06 5.908165183 0.332453748 AAIAFLHALWQDRR ddPTM_HeLa_A486_30min_R1 2 AAIAFLHALWQDRR 14 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 0 0 ; ; 217.91 3.60E-22 116186000 68047 75317 72792 26681 87796 67154 79569 80725 67079 79076 FALSE FALSE TRUE 63277.2567 69348.60662 100979.0118 62114.71638 76783.80701 58869.22225 59659.9946 62345.67971 72893.46173 59274.8549 1.06752276 1.169949833 1.703572485 1.047910054 1.295385828 0.99315675 1.006497522 1.051806534 1.229753524 1 15.85513261 -6.255797386 24.57871943 1.05637169 1.265247521 0.234031819 0.181160934 571.9859454 2491795.007 0.061526986 0.059843069 5.55E-07 6.255797386 0.208875831 AAIELPSLEVLS(ph)DQEEDR ddPTM_HeLa_A485_30min_R1 3 AAIELPSLEVLSDQEEDR 18 0 Q9BQI3-2;Q9BQI3 Q9BQI3-2 EIF2AK1 Eukaryotic translation initiation factor 2-alpha kinase 1 1 0 AAIELPSLEVLS(1)DQEEDR;AAIELPS(0.002)LEVLS(0.998)DQEEDR;AAIELPSLEVLS(1)DQEEDR ;; 192.96 2.53E-18 42811000 55864.7 96290 54659.7 44143.7 46855.1 57310 57385.2 58183.8 43959.7 50069 TRUE FALSE FALSE 68291.60978 107550.2779 74880.59761 46555.15855 42190.04173 60310.66298 45124.38323 43914.13182 52782.00857 37587.71975 1.816859608 2.861314243 1.992155898 1.238573632 1.12244217 1.604531038 1.200508664 1.168310611 1.40423545 1 15.19797378 -5.135091652 3.71749609 1.262796646 2.356215937 0.718605683 0.283676682 0.112386069 2.759860649 0.07397002 0.137800069 7.33E-06 5.135091652 1.093419291 AAIELPSLEVLS(ph)DQEEDR ddPTM_HeLa_A486_30min_R1 1 AAIELPSLEVLSDQEEDR 18 0 Q9BQI3-2;Q9BQI3 Q9BQI3-2 EIF2AK1 Eukaryotic translation initiation factor 2-alpha kinase 1 1 0 AAIELPSLEVLS(1)DQEEDR 158.17 2.68E-11 0 20778 20628 12177 5874.8 13953 16540 13997 15194 16040 21830 TRUE FALSE FALSE 19321.5695 18993.36215 16892.26051 13676.8313 12202.88463 14499.46297 10494.80255 11734.65788 17430.36011 16363.62591 1.180763335 1.160706206 1.032305468 0.835806891 0.745732315 0.886078858 0.641349455 0.71711844 1.065189354 1 13.99820484 -5.072336612 2.308728876 0.817135593 1.174560469 0.54713142 0.120948908 0.212367206 2.214908475 0.03476621 0.079035718 8.47E-06 5.072336612 0.357424875 AAIELPSLEVLS(ph)DQEEDREQCGVK ddPTM_HeLa_A486_30min_R1 4 AAIELPSLEVLSDQEEDREQCGVK 24 1 Q9BQI3-2;Q9BQI3 Q9BQI3-2 EIF2AK1 Eukaryotic translation initiation factor 2-alpha kinase 1 1 0 AAIELPSLEVLS(1)DQEEDREQCGVK;AAIELPSLEVLS(1)DQEEDREQCGVK;AAIELPS(0.002)LEVLS(0.998)DQEEDREQCGVK;AAIELPS(0.089)LEVLS(0.911)DQEEDREQCGVK ;;; 247.5 1.41E-49 310154000 197448 275107 180748 105434 243590 279355 289630 278478 231361 284268 TRUE FALSE FALSE 183607.9148 253306.5194 250738.4662 245455.6803 213036.6708 244891.0204 217161.5106 215074.6385 251415.5578 213085.4425 0.861663343 1.18875563 1.176703876 1.15191201 0.999771117 1.149262087 1.019128797 1.009335204 1.179881435 1 17.70107251 -6.779148557 24.9627699 1.052864314 1.095515784 0.025081514 0.103522579 1031.37999 1453814.201 0.042788907 0.028911523 1.66E-07 6.779148557 0.04265147 AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANMGGTVAHK ddPTM_HeLa_A485_30min_R1 3 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 AAIPPPVYEEQDRPRS(0.91)PT(0.09)GPSNSFLANMGGTVAHK;AAIPPPVY(0.005)EEQDRPRS(0.99)PT(0.005)GPSNSFLANMGGTVAHK;AAIPPPVY(0.015)EEQDRPRS(0.826)PT(0.145)GPS(0.01)NS(0.003)FLANMGGTVAHK ;; 300.47 2.93E-94 4391410000 321597 465313 461152 335403 779244 584121 752794 1024647 463503 532760 TRUE FALSE FALSE 393135.1432 519727.3077 631751.3149 353725.2166 701659.7313 614704.6723 591953.4121 773350.7167 556523.8006 399952.7367 0.982954002 1.299471812 1.579564926 0.884417543 1.75435662 1.536943283 1.480058411 1.933605263 1.391473916 1 18.60947 -5.777426495 24.99974948 1.561995944 1.222732856 0.225681997 0.288534974 337.0882267 527117.4988 0.085681626 0.097459899 1.67E-06 5.777426495 -0.339263088 AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANMGGTVAHK ddPTM_HeLa_A486_30min_R1 6 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 AAIPPPVYEEQDRPRS(0.711)PT(0.289)GPSNSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.988)PT(0.012)GPSNSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.998)PT(0.002)GPSNSFLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.976)PT(0.016)GPS(0.004)NS(0.004)FLANMGGTVAHK;AAIPPPVYEEQDRPRS(0.978)PT(0.021)GPSNSFLANMGGTVAHK;AAIPPPVY(0.001)EEQDRPRS(0.943)PT(0.055)GPS(0.001)NS(0.001)FLANMGGTVAHK ;;;;; 331.82 3.57E-129 8787120000 1095848 1102225 1200492 438869 2031050 1224472 1697610 1841230 1025605 1187455 TRUE FALSE FALSE 1019034.714 1014880.677 1665354.653 1021709.211 1776296.77 1073409.094 1272850.023 1422022.123 1114505.267 890108.539 1.144843207 1.140176318 1.870956833 1.147847893 1.995595697 1.205930566 1.429994171 1.597582835 1.252100411 1 19.76362174 -8.017932608 6.281940883 1.000085922 1.44567994 0.185747081 0.289259845 0.237370543 48.37716058 0.266895414 0.069218421 9.60E-09 8.017932608 0.445594018 AAIPPPVYEEQDRPRSPT(ph)GPSNSFLANMGGTVAHK ddPTM_HeLa_A485_30min_R1 1 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 AAIPPPVYEEQDRPRS(0.429)PT(0.566)GPS(0.002)NS(0.003)FLANMGGTVAHK 186.58 5.07E-21 3139100000 184330 185690 197860 197500 305060 258710 367420 399550 210690 299430 TRUE FALSE FALSE 225333.5726 207404.8302 271056.6476 208288.9249 274687.1553 272255.6556 288917.7155 301559.736 252973.5504 224787.6116 1.002428786 0.922670198 1.205834457 0.926603221 1.221985292 1.211168416 1.285291985 1.34153183 1.1253892 1 17.778203 -5.779168242 24.82254346 1.219704685 1.021508202 0.374039587 0.113799514 212.7198504 297832.0629 0.034082657 0.038728487 1.66E-06 5.779168242 -0.198196483 AAISQLRS(ph)PR ddPTM_HeLa_A485_30min_R1 1 AAISQLRSPR 10 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 AAISQLRS(1)PR 70.54 0.006629 244110000 231540 295760 240260 187610 276280 229510 208880 223070 192460 246780 TRUE FALSE FALSE 283045.2742 330346.5592 329142.1721 197858.6592 248772.5931 241526.7887 164251.0816 168361.7327 231084.9567 185262.2876 1.527808373 1.783129008 1.776628024 1.067992098 1.342812918 1.303701858 0.886586707 0.908774985 1.247339432 1 17.49920971 -5.480548895 1.08992912 1.052552498 1.732884703 0.654973869 0.184115383 0.333876664 0.801069811 0.075627146 0.159640077 3.31E-06 5.480548895 0.680332205 AAISQLRS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AAISQLRSPR 10 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 AAIS(0.003)QLRS(0.997)PR;AAIS(0.001)QLRS(0.999)PR ; 68.515 0.0072538 612310000 438250 535790 466390 134482 511200 378910 423040 409540 323480 365390 TRUE FALSE FALSE 407530.9381 493332.0491 646988.6984 313080.8923 447080.5292 332163.9367 317190.9175 316296.6822 351519.5069 273893.9657 1.487914993 1.801178963 2.362186756 1.143073348 1.632312446 1.212746458 1.158079247 1.154814351 1.283414572 1 18.06325796 -5.719969143 1.389834263 1.180298527 1.840046082 0.483482092 0.28168672 0.359431285 1.448154097 0.106487324 0.155004352 1.91E-06 5.719969143 0.659747554 AAKLS(ph)EGS(ph)QPAEEEEDQETPSR ddPTM_HeLa_A486_30min_R1 1 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 AAKLS(1)EGS(1)QPAEEEEDQETPSR 70.67 0.0075724 742880000 792130 779640 380080 556430 744290 990340 1262100 1210300 647340 1527900 TRUE FALSE FALSE 736605.7776 717858.487 527257.1549 1295397.16 650934.208 868161.9198 946309.2309 934741.1107 703451.9524 1145303.895 0.643153124 0.626784289 0.460364413 1.131051039 0.568350645 0.758018831 0.826251648 0.816151167 0.614205501 1 20.12729902 -13.84068123 0.038680624 2.175443559 5.64E-06 0.202227833 0.174014099 1464.980972 4.338478367 212.7047938 68.30481266 1.44E-14 13.84068123 -2.175437918 AAKLS(ph)EGSQPAEEEEDQETPSR ddPTM_HeLa_A485_30min_R1 2 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AAKLS(0.993)EGS(0.007)QPAEEEEDQETPSR;AAKLS(0.962)EGS(0.038)QPAEEEEDQETPSR ; 270.45 6.57E-61 989700000 269790 316130 264750 299500 400400 341680 431050 457050 243160 351430 TRUE FALSE FALSE 329803.8547 353098.6535 362692.0422 315860.9266 360534.7701 359569.8365 338952.6461 344957.7709 291959.9816 263824.9686 1.25008583 1.338382244 1.374744946 1.197236669 1.36656804 1.362910563 1.284763334 1.307525109 1.106642723 1 18.00922158 -7.886191712 2.82122724 1.001135029 1.314115322 0.796058873 0.053294915 0.099807174 1.58086204 0.050080076 0.01363416 1.30E-08 7.886191712 0.312980293 AAKNS(ph)EEEEEEK ddPTM_HeLa_A485_30min_R1 9 AAKNSEEEEEEK 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK ;;;;;;;; 252.25 7.15E-30 6225420000 3580115 2418132 786271 7372850 1727145 2366654 4281582 3584033 1806429 8055800 TRUE FALSE FALSE 4376499.23 2700911.502 1077145.362 7775610.126 1555184.379 2490568.344 3366787.028 2705043.287 2168962.731 6047637.316 0.723670915 0.446606065 0.178110112 1.285726924 0.257155695 0.411825018 0.556711134 0.447289271 0.358646297 1 22.52794019 -10.08634393 4.869026882 1.000017189 0.517077898 0.19464924 0.293861698 5.32E-05 9.99E-06 0.276287352 0.067007143 8.20E-11 10.08634393 -0.482939292 AAKNS(ph)EEEEEEK ddPTM_HeLa_A486_30min_R1 6 AAKNSEEEEEEK 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK;AAKNS(1)EEEEEEK ;;;;; 225.37 1.74E-23 5150610000 3095800 1524599 760709 2630030 1025328 3963240 4234680 2874480 2145533 8244490 TRUE FALSE FALSE 2878800.407 1403784.223 1055275.897 6122842.754 896721.8014 3474295.744 3175118.274 2220023.653 2331509.528 6180016.041 0.465824099 0.227148961 0.170756174 0.990748683 0.145100238 0.562182318 0.51377185 0.359226196 0.377265935 1 22.55917915 -11.20287296 2.087387503 2.528092565 0.42367667 0.357633531 0.231765537 16694719.71 3112085.986 120394531.4 0.060799527 6.27E-12 11.20287296 -2.104415895 AAKNS(ph)EEEEEEKKK ddPTM_HeLa_A485_30min_R1 5 AAKNSEEEEEEKKK 14 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK ;;;; 223.18 8.21E-28 40973980000 6167540 2563700 1083934 24188900 3798690 5145900 14108720 12584850 2929130 30940900 TRUE FALSE FALSE 7539487.995 2863502.414 1484926.293 25510278.36 3420479.086 5415331.367 11094276.71 9498395.805 3516979.523 23227903.06 0.324587544 0.123278559 0.063928556 1.098260067 0.147257334 0.233139055 0.477627132 0.408921795 0.151411839 1 24.46935558 -10.16990952 4.287834092 1.000177918 0.342283769 0.329296846 0.28397124 774097290.7 1467552295 1893393.559 0.070888997 6.76E-11 10.16990952 -0.657894149 AAKNS(ph)EEEEEEKKK ddPTM_HeLa_A486_30min_R1 6 AAKNSEEEEEEKKK 14 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK;AAKNS(1)EEEEEEKKK ;;;;; 191.21 5.19E-17 28428470000 7164240 3201230 1151755 17367370 2468040 14577710 20589700 12692280 4459870 30689000 TRUE FALSE FALSE 6662063.772 2947552.876 1597745.381 40432115.06 2158475.41 12779260.36 15437939.28 9802524.915 4846455.123 23004274.65 0.289601123 0.128130659 0.069454282 1.75759139 0.093829318 0.55551677 0.671090027 0.42611754 0.210676285 1 24.45539863 AAKPGPAEAPS(ph)PT(ph)ASPS(ph)GDASPPATAPYDPR ddPTM_HeLa_A485_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 3 0 AAKPGPAEAPS(0.953)PT(0.517)AS(0.519)PS(0.54)GDAS(0.45)PPAT(0.016)APY(0.006)DPR 56.239 0.016857 306780000 46707 56781 49444 61811 69351 59429 70773 84459 49421 75045 TRUE FALSE FALSE 57096.81101 63421.04402 67735.39314 65187.57842 62446.17093 62540.61055 55651.77039 63745.29782 59339.34138 56337.6626 1.013474972 1.125730836 1.20231103 1.157087025 1.108426726 1.11010304 0.987825334 1.131486378 1.053280144 1 15.78181209 -6.545111056 24.56186001 1.053370694 1.126237531 0.291289504 0.057461673 276.3882933 305345.698 0.022472149 0.017408066 2.85E-07 6.545111056 0.072866837 AAKPGPAEAPS(ph)PT(ph)ASPSGDASPPATAPYDPR ddPTM_HeLa_A486_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.958)PT(0.556)AS(0.473)PS(0.012)GDASPPATAPYDPR 106.64 0.00010185 1899900000 106310 123840 75471 48649 138080 103560 123250 131230 95804 126120 TRUE FALSE FALSE 98858.21799 114026.4674 104695.3924 113257.3306 120760.7189 90783.82012 92411.54639 101351.7937 104108.3679 94538.7311 1.04569013 1.206134947 1.107433865 1.197999267 1.277367672 0.960281771 0.977499331 1.072066364 1.10122451 1 16.52861788 -6.273029605 24.99860498 1.023923852 1.167524765 0.521555635 0.069289617 653.7405681 1410029.354 0.025036443 0.022271066 5.33E-07 6.273029605 0.143600914 AAKPGPAEAPS(ph)PTAS(ph)PSGDAS(ph)PPATAPYDPR ddPTM_HeLa_A485_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 3 0 AAKPGPAEAPS(0.73)PT(0.331)AS(0.919)PS(0.062)GDAS(0.951)PPAT(0.005)APYDPR 74.393 0.0027542 318930000 72079 88132 77493 84676 104680 93166 127400 125810 81031 112030 TRUE FALSE FALSE 88112.72488 98438.27075 106160.8855 89301.63547 94257.69165 98044.0277 100179.9492 94954.90024 97293.17844 84102.98276 1.047676574 1.170449222 1.262272537 1.061812941 1.120741364 1.165761599 1.191158101 1.129031303 1.156833863 1 16.35986935 -10.94508299 2.421127575 0.891328225 1.147601166 0.354472098 0.058646944 8080108.332 3720308.91 4946008.517 0.014715945 1.13E-11 10.94508299 0.256272941 AAKPGPAEAPS(ph)PTAS(ph)PSGDAS(ph)PPATAPYDPR ddPTM_HeLa_A486_30min_R1 2 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 3 0 AAKPGPAEAPS(0.91)PT(0.146)AS(0.881)PS(0.064)GDAS(0.987)PPAT(0.011)APY(0.001)DPR;AAKPGPAEAPS(0.912)PT(0.101)AS(0.939)PS(0.052)GDAS(0.996)PPAT(0.001)APYDPR ; 101.86 0.00031288 663170000 200537 203715 139818 75331 204547 212524 206046 210230 159959 220458 TRUE FALSE FALSE 186480.3919 187571.8815 193959.2741 175374.375 178890.8079 186304.9497 154491.1115 162365.2183 173824.3749 165253.8819 1.128447875 1.135052801 1.173704798 1.06124209 1.082521063 1.127386223 0.934871301 0.982519844 1.051862582 1 17.33432464 -6.74825162 24.99806294 0.990856753 1.117162991 0.715483136 0.03883979 128.6102656 243787.4846 0.015730734 0.012109802 1.79E-07 6.74825162 0.126306238 AAKPGPAEAPS(ph)PTASPS(ph)GDASPPATAPYDPR ddPTM_HeLa_A485_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.853)PT(0.177)AS(0.055)PS(0.428)GDAS(0.4)PPAT(0.074)APY(0.013)DPR 58.688 0.01806 669400000 163590 188460 136940 189100 230720 189860 269780 283080 165400 231040 TRUE FALSE FALSE 199980.0311 210498.7576 187599.8045 199430.0542 207748.7067 199800.776 212139.2991 213654.1861 198594.2629 173445.98 1.152981644 1.213627192 1.081603647 1.149810761 1.197771818 1.151948152 1.223085707 1.231819764 1.144992019 1 17.40412688 -8.028997254 23.55074189 0.999999998 1.175081412 0.60479883 0.042337372 1128.685029 916685.1404 0.042551213 0.010986676 9.35E-09 8.028997254 0.175081414 AAKPGPAEAPS(ph)PTASPSGDAS(ph)PPATAPYDPR ddPTM_HeLa_A485_30min_R1 4 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.958)PT(0.07)AS(0.323)PS(0.074)GDAS(0.559)PPAT(0.016)APY(0.001)DPR;AAKPGPAEAPS(0.67)PT(0.277)AS(0.061)PS(0.065)GDAS(0.769)PPAT(0.104)APY(0.054)DPR;AAKPGPAEAPS(0.976)PT(0.024)AS(0.001)PS(0.063)GDAS(0.935)PPAT(0.001)APYDPR;AAKPGPAEAPS(0.996)PT(0.026)AS(0.023)PS(0.016)GDAS(0.939)PPATAPYDPR ;;; 176.79 3.25E-15 4158570000 426327 563743 455640 504661 687328 582644 772630 818317 544459 681460 TRUE FALSE FALSE 521161.9703 629667.8399 624200.1968 532229.3526 618895.211 613150.3389 607551.2887 617623.4727 653726.9272 511584.5633 1.018721063 1.230818686 1.220131023 1.040354598 1.209761309 1.198531744 1.187587219 1.207275428 1.27784725 1 18.96461321 AAKPGPAEAPS(ph)PTASPSGDAS(ph)PPATAPYDPR ddPTM_HeLa_A486_30min_R1 2 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.911)PT(0.079)AS(0.013)PS(0.045)GDAS(0.951)PPATAPYDPR;AAKPGPAEAPS(0.997)PT(0.078)AS(0.2)PS(0.013)GDAS(0.712)PPATAPYDPR ; 164.28 2.81E-14 2514480000 353200 437320 280800 111703 428710 365110 442360 440760 326240 450880 TRUE FALSE FALSE 328442.5039 402665.1705 389533.2801 260050.2292 374937.1942 320066.4404 331676.8492 340408.5697 354518.7459 337976.7133 0.971790337 1.191399155 1.152544731 0.769432387 1.10935807 0.947007376 0.981360065 1.007195337 1.048944297 1 18.36656432 AAKPGPAEAPS(ph)PTASPSGDASPPATAPYDPR ddPTM_HeLa_A485_30min_R1 4 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AAKPGPAEAPS(0.784)PT(0.215)AS(0.002)PSGDASPPATAPYDPR;AAKPGPAEAPS(0.979)PT(0.019)AS(0.002)PSGDASPPATAPYDPR;AAKPGPAEAPS(0.952)PT(0.046)AS(0.002)PSGDASPPATAPYDPR;AAKPGPAEAPS(0.969)PT(0.029)AS(0.001)PSGDASPPATAPYDPR ;;; 173.22 4.56E-15 12187800000 289101 359257 316312 353147 433610 414274 462940 499390 344192 438130 TRUE FALSE FALSE 353410.5201 401268.981 433328.9716 372438.5264 390438.2659 435964.7461 364029.0871 376913.8195 413268.1773 328912.2542 1.074482679 1.219987933 1.317460709 1.132333994 1.187059044 1.325474319 1.106766569 1.145940337 1.256469384 1 18.32734323 -10.21357195 3.445295796 0.999614921 1.198027877 0.347029264 0.080712828 172034720.8 250362844.6 702852.8633 0.01997394 6.12E-11 10.21357195 0.198412955 AAKPGPAEAPS(ph)PTASPSGDASPPATAPYDPR ddPTM_HeLa_A486_30min_R1 4 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AAKPGPAEAPS(0.731)PT(0.209)AS(0.06)PSGDASPPATAPYDPR;AAKPGPAEAPS(0.764)PT(0.218)AS(0.018)PSGDASPPATAPYDPR;AAKPGPAEAPS(0.958)PT(0.042)ASPSGDASPPATAPYDPR;AAKPGPAEAPS(0.939)PT(0.058)AS(0.003)PSGDASPPATAPYDPR ;;; 164.94 1.18E-14 11672300000 724620 827220 583924 260147 886890 738590 872130 903040 698970 927220 TRUE FALSE FALSE 673827.8799 761668.0745 810035.0108 605635.3631 775647.9863 647470.2752 653913.8495 697437.5052 759557.2824 695038.0768 0.969483403 1.095865248 1.16545415 0.871370049 1.115979127 0.93156087 0.940831692 1.003452226 1.092828304 1 19.40673249 -5.245573864 24.98662646 0.994162104 1.078827347 0.17979472 0.08141642 1401.988175 2207991.326 0.021676228 0.03739348 5.68E-06 5.245573864 0.084665243 AAKPGPAEAPSPTASPSGDAS(ph)PPATAPYDPR ddPTM_HeLa_A486_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AAKPGPAEAPSPTASPS(0.001)GDAS(0.715)PPAT(0.246)APY(0.038)DPR 97.257 3.17E-09 0 91525 108170 64595 32923 112230 109420 105570 100510 77859 108710 TRUE FALSE FALSE 85109.57014 99598.21525 89607.91391 76646.40784 98153.0669 95920.8729 79155.26939 77626.06712 84607.88081 81488.30842 1.044439034 1.222239327 1.099641355 0.940581653 1.204504901 1.177112088 0.971369647 0.952603737 1.038282454 1 16.31430546 -6.774694833 24.98525125 0.986614233 1.115114652 0.368795601 0.079526185 263.093715 495901.8822 0.034277423 0.023262706 1.68E-07 6.774694833 0.128500419 AAKPTT(ph)TPEVK ddPTM_HeLa_A485_30min_R1 1 AAKPTTTPEVK 11 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAKPT(0.045)T(0.54)T(0.415)PEVK 75.961 0.011571 1214300000 2601300 1986700 1561700 3635000 2995800 2579900 3956900 4197700 2239200 4696900 TRUE FALSE FALSE 3179950.211 2219027.283 2139437.818 3833570.846 2697527.633 2714979.575 3111475.99 3168207.493 2688586.901 3526049.27 0.901845087 0.629323958 0.606752105 1.087214203 0.765028344 0.769977776 0.882425557 0.898514811 0.762492721 1 21.7496212 -14 0.076352856 1.62104895 0.60959565 0.158338314 0.132995708 496.4816938 2.695766768 52.95379876 5.479155993 1.00E-14 14 -1.0114533 AAKPTT(ph)TPEVK ddPTM_HeLa_A486_30min_R1 1 AAKPTTTPEVK 11 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAKPT(0.072)T(0.465)T(0.463)PEVK 101.62 0.0013831 2536800000 6683000 6832700 3121200 3696800 5944100 7491800 9536600 8877000 4936200 9536700 TRUE FALSE FALSE 6214556.211 6291251.968 4329812.229 8606337.226 5198535.551 6567537.887 7150441.812 6855900.884 5364073.79 7148648.247 0.869333054 0.880061761 0.605682652 1.203911135 0.727205392 0.918710456 1.000250896 0.959048571 0.750361971 1 22.76923903 -5.234715325 24.99047839 0.928486783 0.794529495 0.186758994 0.144211509 1418.231146 1326229.63 0.037690148 0.065257464 5.82E-06 5.234715325 -0.133957288 AAKPTTT(ph)PEVK ddPTM_HeLa_A485_30min_R1 3 AAKPTTTPEVK 11 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAKPTT(0.039)T(0.961)PEVK;AAKPT(0.05)T(0.233)T(0.717)PEVK;AAKPT(0.008)T(0.081)T(0.911)PEVK ;; 99.161 0.0017925 5773700000 6421600 4936600 3320460 8930300 7101900 6586600 9657900 10542600 5386800 12326300 TRUE FALSE FALSE 7850062.766 5513892.427 4548836.33 9418139.676 6394809.9 6931464.191 7594410.767 7957010.82 6467881.349 9253580.259 0.848327085 0.595865846 0.491575823 1.017783324 0.69106332 0.749057554 0.820699724 0.859884563 0.69895988 1 23.14158023 -13.9999998 0.107519484 1.798986796 0.602152533 0.231423029 0.138645027 250.2276056 1.796315104 44.16117369 1.882619814 1.00E-14 13.9999998 -1.196834263 AAKPTTT(ph)PEVK ddPTM_HeLa_A486_30min_R1 2 AAKPTTTPEVK 11 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAKPT(0.002)T(0.063)T(0.936)PEVK;AAKPT(0.012)T(0.103)T(0.885)PEVK ; 102.28 0.0012746 4506200000 5942600 5779400 2789100 3177600 5534900 6778100 8396000 7911100 4120700 8452500 TRUE FALSE FALSE 5526054.428 5321419.296 3869114.215 7397613.387 4840661.231 5941886.937 6295231.996 6109915.228 4477885.594 6335938.983 0.87217608 0.839878558 0.610661533 1.167563862 0.764000607 0.937806843 0.993575224 0.964326715 0.7067438 1 22.59512701 -5.243445287 24.98827138 0.927573381 0.780802749 0.222231692 0.136000623 1349.226386 1873658.856 0.03568848 0.061642982 5.71E-06 5.243445287 -0.146770632 AALAPAKES(ph)PR ddPTM_HeLa_A485_30min_R1 9 AALAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR ;;;;;;;; 123.95 3.25E-05 1.50E+11 24255940 26138980 21951080 28962400 31442900 28802320 39662610 39343380 23485730 37065110 TRUE FALSE FALSE 29651590.17 29195706.33 30071697.95 30544542.58 28312334.47 30310364.94 31188369.36 29694354.37 28199100.59 27825460.21 1.065628024 1.049244329 1.080725987 1.097719224 1.017497438 1.089303275 1.12085727 1.067164897 1.013428004 1 24.72990221 -7.782900788 4.078414703 1.002057746 1.074379246 0.51145608 0.026328098 0.174430475 6.072312549 0.024869979 0.007008181 1.65E-08 7.782900788 0.0723215 AALAPAKES(ph)PR ddPTM_HeLa_A486_30min_R1 12 AALAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR;AALAPAKES(1)PR ;;;;;;;;;;; 196.75 3.16E-11 1.21E+11 29291440 30476520 19728980 12539030 30838100 30502750 37895120 36989190 24115800 36770970 TRUE FALSE FALSE 27238261.32 28061449.56 27368569.42 29191495.53 26970097.94 26739630.83 28413360.16 28567558.91 26206176.96 27563279.77 0.988208281 1.018073676 0.992935879 1.059071916 0.978479273 0.970117891 1.030841046 1.0364354 0.950764103 1 24.71624423 AALAPAKES(ph)PRK ddPTM_HeLa_A485_30min_R1 4 AALAPAKESPRK 12 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AALAPAKES(1)PRK;AALAPAKES(1)PRK;AALAPAKES(1)PRK;AALAPAKES(1)PRK ;;; 120.92 4.80E-05 2316480000 1850200 1365515 988120 2838410 2152520 1843400 3040650 2618630 1490590 3720890 TRUE FALSE FALSE 2261770.607 1525200.101 1353666.707 2993465.151 1938207.551 1939917.574 2390990.288 1976406.887 1789737.74 2793340.601 0.809700975 0.546012935 0.484604959 1.071643447 0.693867246 0.694479425 0.855960883 0.707542391 0.640715901 1 21.41356007 -11.6283843 2.045939585 6.355611261 0.722579285 0.221226993 0.156069159 4678250.323 143333.0599 117265288.4 0.039932515 2.35E-12 11.6283843 -5.633031976 AALAPAKES(ph)PRK ddPTM_HeLa_A486_30min_R1 4 AALAPAKESPRK 12 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AALAPAKES(1)PRK;AALAPAKES(1)PRK;AALAPAKES(1)PRK;AALAPAKES(1)PRK ;;; 148.57 6.72E-08 3114380000 3131760 3042800 1476480 1855430 2951720 3891130 4904730 4654940 2337470 4749100 TRUE FALSE FALSE 2912239.796 2801677.446 2048212.598 4319534.808 2581487.754 3411081.943 3677514.677 3595111.779 2540083.782 3559894.449 0.818069142 0.787011381 0.575357676 1.21338845 0.72515851 0.958197495 1.03304037 1.009892802 0.713527836 1 21.76340304 -5.241366005 24.99760453 0.945246095 0.732832625 0.318523095 0.14969436 1023.596559 1274695.186 0.039225797 0.067833411 5.74E-06 5.241366005 -0.21241347 AALDGGVASAAS(ph)PESKPSPGTK ddPTM_HeLa_A485_30min_R1 1 AALDGGVASAASPESKPSPGTK 22 1 Q9Y4K1;A0A0J9YWL0;A0A494C1M5 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 AALDGGVASAAS(1)PESKPSPGTK 226.03 1.99E-36 111360000 43895 34513 22408 40821 41263 41686 72307 58491 25415 77916 TRUE FALSE FALSE 53659.29131 38548.99513 30697.65167 43050.94787 37154.71084 43868.6145 56858.01876 44145.99054 30515.55738 58492.97514 0.917363003 0.659036321 0.524809203 0.73600202 0.635199539 0.749980906 0.972048671 0.754722946 0.521696106 1 15.83597575 -6.519172511 24.99115316 0.801582539 0.686112903 0.113407001 0.153058863 374.1838914 2523160.024 0.05809796 0.046009917 3.03E-07 6.519172511 -0.115469636 AALDGGVASAAS(ph)PESKPSPGTK ddPTM_HeLa_A486_30min_R1 1 AALDGGVASAASPESKPSPGTK 22 1 Q9Y4K1;A0A0J9YWL0;A0A494C1M5 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 AALDGGVASAAS(1)PESKPSPGTK 235.25 7.21E-47 117570000 203960 227120 100410 119840 243530 263400 348250 328520 183410 315190 TRUE FALSE FALSE 189663.4573 209122.184 139291.4411 278993.5764 212984.1966 230904.3861 261114.1666 253723.1675 199308.1265 236264.3725 0.802759448 0.885119419 0.589557535 1.180853353 0.901465567 0.977313607 1.105177915 1.073895166 0.843580961 1 17.85004257 -5.263464426 24.99996207 1.012696329 0.771742867 0.506744174 0.114003581 149.4587877 1845131.818 0.030968872 0.048642426 5.45E-06 5.263464426 -0.240953462 AALDHSCS(ph)PSKGPVDWSR ddPTM_HeLa_A486_30min_R1 1 AALDHSCSPSKGPVDWSR 18 1 Q5T7B8-4;Q5T7B8-2;Q5T7B8 Q5T7B8-4 KIF24 Kinesin-like protein KIF24 1 0 AALDHS(0.003)CS(0.995)PS(0.001)KGPVDWSR 134.34 3.24E-06 149110000 72919 76174 49724 31208 76547 82600 96281 94122 67576 95037 TRUE FALSE FALSE 67807.75465 70137.69482 68978.46445 72653.80116 66945.76149 72409.65182 72190.47544 72692.47527 73433.54209 71239.11661 0.951833176 0.984539087 0.968266701 1.019858255 0.939733178 1.016431074 1.013354445 1.020401132 1.030803659 1 16.12038201 -6.374362969 11.22508502 1.017405629 0.975862399 0.510271972 0.021117257 0.447314821 41.97673615 0.007103399 0.006262637 4.22E-07 6.374362969 -0.04154323 AALGEVSR ddPTM_HeLa_A486_30min_R1 1 AALGEVSR 8 0 A0A140T9S5;Q9Y334-2;Q9Y334 A0A140T9S5 VWA7 von Willebrand factor A domain-containing protein 7 0 0 114.43 0.0089336 25103000 13733 17535 16888 5628.4 20593 15152 17628 16519 17512 17597 FALSE FALSE TRUE 12770.38762 16145.46274 23427.48588 13103.19964 18010.03392 13282.70029 13217.28795 12757.98431 19029.95426 13190.59666 0.968143288 1.224013072 1.776074766 0.993374294 1.365369162 1.006982522 1.002023509 0.967202973 1.442690937 1 13.6872222 -6.264860849 24.6980065 1.076620394 1.27635477 0.120124024 0.244483171 550.1179655 3971028.617 0.084652625 0.077705506 5.43E-07 6.264860849 0.199734376 AALGLQDS(ph)DDEDAAVDIDEQIESMFNSK ddPTM_HeLa_A485_30min_R1 1 AALGLQDSDDEDAAVDIDEQIESMFNSK 28 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 1 0 AALGLQDS(1)DDEDAAVDIDEQIESMFNSK 77.19 5.83E-06 0 3759.7 3372.3 2067.1 3383.1 4773.3 3359.3 3516.3 3912.5 4137.2 6285.7 TRUE FALSE FALSE 4596.032294 3766.66115 2831.806309 3567.910187 4298.053492 3535.187754 2765.013779 2952.95324 4967.498091 4718.79067 0.973985204 0.798225947 0.600112721 0.7561069 0.910837923 0.749172405 0.585958135 0.625786022 1.052705754 1 12.20420146 -7.773669571 24.9978316 1.026353127 0.746698993 0.457641478 0.120284823 239.1417125 488776.8617 0.119828399 0.03186008 1.68E-08 7.773669571 -0.279654134 AALGLQDS(ph)DDEDAAVDIDEQIESMFNSK ddPTM_HeLa_A486_30min_R1 2 AALGLQDSDDEDAAVDIDEQIESMFNSK 28 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 1 0 AALGLQDS(1)DDEDAAVDIDEQIESMFNSK;AALGLQDS(1)DDEDAAVDIDEQIESMFNSK ; 99.135 3.86E-09 10884000 24917.02 28572 18382.23 14839 27454.22 30996.9 34365.7 35344 23903.56 36828 TRUE FALSE FALSE 23170.46557 26307.85066 25500.32175 34545.94192 24010.65573 27172.81763 25767.03838 27296.94275 25975.53983 27606.02909 0.839326275 0.952974822 0.923722918 1.251391202 0.869761299 0.984307361 0.933384454 0.988803666 0.940937204 1 14.75269576 -4.281509059 1.985010098 0.98883059 0.801604972 0.176930687 0.096164755 1.288150968 5.644143338 0.025687957 0.433585365 5.23E-05 4.281509059 -0.187225618 AALKEWNGVVSESDS(ph)PVKRPGR ddPTM_HeLa_A485_30min_R1 2 AALKEWNGVVSESDSPVKRPGR 22 3 P18858-2;P18858;M0R0Q7;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 AALKEWNGVVS(0.001)ES(0.104)DS(0.894)PVKRPGR;AALKEWNGVVSES(0.014)DS(0.986)PVKRPGR ; 198.15 9.77E-27 1442250000 1409450 1560350 994260 1518660 2008470 2049590 2843100 3134000 1338220 2089550 TRUE FALSE FALSE 1722977.29 1742819.359 1362078.149 1601620.55 1808499.675 2156903.363 2235648.459 2365381.586 1606788.479 1568663.64 1.098372682 1.111021709 0.868304787 1.021009545 1.152891945 1.374994172 1.425193012 1.507895973 1.024304024 1 20.58110461 -5.99873412 3.458194686 1.306968759 1.021348421 0.30816581 0.164727615 0.249527477 6.344840811 0.054687127 0.059297673 1.00E-06 5.99873412 -0.285620338 AALKEWNGVVSESDS(ph)PVKRPGR ddPTM_HeLa_A486_30min_R1 1 AALKEWNGVVSESDSPVKRPGR 22 3 P18858-2;P18858;M0R0Q7;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 AALKEWNGVVSESDS(1)PVKRPGR 179.86 2.08E-19 1030000000 1078900 930620 515700 530990 1174300 1028700 1541700 1390300 714050 1548100 TRUE FALSE FALSE 1003274.681 856874.2819 715392.8509 1236171.555 1027008.344 901789.4531 1155950.354 1073759.04 775944.4289 1160445.684 0.864559794 0.738401025 0.616481117 1.065255851 0.88501199 0.777106129 0.996126204 0.925298836 0.668660705 1 20.14624757 -5.251290475 24.96890792 0.897330099 0.739672698 0.273741263 0.121224138 969.1115717 2384258.864 0.032818911 0.056005434 5.61E-06 5.251290475 -0.157657402 AALLKAS(ph)PK ddPTM_HeLa_A485_30min_R1 1 AALLKASPK 9 1 P50914 P50914 RPL14 60S ribosomal protein L14 1 0 AALLKAS(1)PK 55.353 0.019994 45484000000 5559200 4521400 2718300 8690300 6653200 5778300 10615000 12958000 4169000 12885000 TRUE FALSE FALSE 6795824.861 5050138.399 3723912.288 9165029.084 5990784.047 6080842.853 8347018.533 9780030.183 5005680.06 9673006.631 0.702555588 0.522085696 0.384979813 0.947485041 0.619330088 0.62864041 0.862918723 1.011064145 0.517489572 1 23.20553296 -5.93298721 0.134856616 1.126621468 0.252192458 0.254191497 0.182483167 20.41844825 0.977567156 1.824070263 4.300515364 1.17E-06 5.93298721 -0.87442901 AALLKAS(ph)PK ddPTM_HeLa_A486_30min_R1 4 AALLKASPK 9 1 P50914 P50914 RPL14 60S ribosomal protein L14 1 0 AALLKAS(1)PK;AALLKAS(1)PK;AALLKAS(1)PK;AALLKAS(1)PK ;;; 80.979 0.003664 53540710000 52406330 45091230 19549890 41203240 45134850 54683380 89894910 80080870 28795420 95522350 TRUE FALSE FALSE 48732916.89 41518036.72 27120130.97 95923225.02 39473616.25 47937100.56 67402252.71 61848204.05 31291430.19 71602931.81 0.680599462 0.579837105 0.37875727 1.339654992 0.551284916 0.669485164 0.9413337 0.863766364 0.437013253 1 26.09351532 -13.99999959 0.034645427 2.106540618 2.06E-08 0.073282522 0.267981372 3301.069974 8.56156186 434.4124571 152.9601109 1.00E-14 13.99999959 -2.106540597 AALLNQHYQVNFK ddPTM_HeLa_A485_30min_R1 1 AALLNQHYQVNFK 13 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 0 227.2 4.29E-22 17969000 36724 42190 37858 38888 52805 44949 56014 55700 37186 53034 FALSE FALSE TRUE 44893.1271 47123.7535 51863.2496 41012.35297 47547.54879 47302.46014 44046.15131 42039.48767 44648.88911 39813.59982 1.127582718 1.183609463 1.302651602 1.030109138 1.194253949 1.188098046 1.106309189 1.055907726 1.121448181 1 15.2809737 -7.662498306 0.46122353 0.998824917 1.18630756 0.372559533 0.067763565 1.036958393 0.587723056 0.078703571 0.04781951 2.18E-08 7.662498306 0.187482643 AALLNQHYQVNFK ddPTM_HeLa_A486_30min_R1 2 AALLNQHYQVNFK 13 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 0 ; ; 203.83 3.99E-15 50057000 56195 60355 46825 21814 71261 63524 69523 70710 53974 71083 FALSE FALSE TRUE 52256.02069 55572.24999 64956.89402 50784.09442 62322.7809 55687.05474 52127.61006 54610.87659 58652.50978 53283.35413 0.98071943 1.042957053 1.219084179 0.953094925 1.169648231 1.045111661 0.978309472 1.024914394 1.100766097 1 15.70139728 -6.51456741 24.90580263 1.025736098 1.076320374 0.072406223 0.079416978 1052.128589 3152828.38 0.028809639 0.023410032 3.06E-07 6.51456741 0.050584276 AALPSLTNPPS(ph)LSPIRR ddPTM_HeLa_A485_30min_R1 1 AALPSLTNPPSLSPIRR 17 1 P42858 P42858 HTT Huntingtin 1 0 AALPSLTNPPS(0.599)LS(0.401)PIRR 96.379 0.00035934 277340000 29413 41359 36718 31454 53627 38872 44281 52988 34632 47028 TRUE FALSE FALSE 35955.82038 46195.57527 50301.51616 33172.25237 48287.70758 40907.27781 34820.00261 39992.60992 41582.32474 35304.78509 1.018440426 1.308479153 1.424778994 0.939596496 1.367738324 1.158689331 0.986268647 1.132781571 1.177809881 1 15.10757611 -6.526778774 24.96054023 1.083451396 1.218819125 0.159748903 0.14781672 217.5411675 1392257.752 0.055152128 0.042915597 2.97E-07 6.526778774 0.13536773 AALPSLTNPPSLS(ph)PIRR ddPTM_HeLa_A485_30min_R1 1 AALPSLTNPPSLSPIRR 17 1 P42858 P42858 HTT Huntingtin 1 0 AALPSLTNPPS(0.288)LS(0.712)PIRR 143.04 4.99E-08 366610000 114860 160030 151500 105340 210570 160050 160560 197410 120160 159600 TRUE FALSE FALSE 140410.2107 178744.1164 207546.1544 111094.4575 189604.9114 168429.9705 126255.0443 148994.888 144275.0098 119814.6572 1.171895109 1.491838483 1.732226751 0.927219257 1.582485114 1.405754308 1.053752915 1.24354475 1.204151589 1 16.87044488 -7.3781437 0.509637043 1.014825788 1.416669012 0.218785714 0.221758114 1.333780468 0.822380191 0.229631686 0.145010299 4.19E-08 7.3781437 0.401843224 AALPSLTNPPSLS(ph)PIRR ddPTM_HeLa_A486_30min_R1 2 AALPSLTNPPSLSPIRR 17 1 P42858 P42858 HTT Huntingtin 1 0 AALPSLTNPPS(0.023)LS(0.977)PIRR;AALPSLTNPPS(0.019)LS(0.981)PIRR ; 208.92 1.27E-25 1140640000 344280 339460 327180 121052 422480 311540 352560 393450 292590 355960 TRUE FALSE FALSE 320147.7499 312559.9533 453872.8582 281815.1736 369488.6189 273105.3623 264345.759 303870.024 317951.9368 266825.2991 1.199840311 1.171402991 1.701011335 1.05617861 1.384758567 1.023536236 0.990707253 1.138835129 1.191610907 1 18.02553594 -6.266251658 24.98491217 1.072725679 1.303787134 0.322310329 0.169388236 516.5805787 2682030.252 0.058300993 0.053054591 5.42E-07 6.266251658 0.231061455 AALS(ph)SSELLELGDSLMR ddPTM_HeLa_A485_30min_R1 1 AALSSSELLELGDSLMR 17 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 AALS(0.868)S(0.066)S(0.066)ELLELGDSLMR 63.537 0.017653 13556000 16775 14495 15816 17582 17222 14405 18886 21360 16070 21350 TRUE FALSE FALSE 20506.54088 16190.06416 21666.99656 18542.46014 15507.31721 15159.22353 14850.85182 16121.42651 19295.1016 16027.83792 1.279432758 1.01012153 1.351835267 1.156890919 0.96752396 0.945805891 0.926566134 1.005839128 1.203849309 1 13.96829221 -5.666395925 5.153052365 1.001724891 1.202107598 0.433201717 0.10797003 0.203188824 8.72967178 0.032360822 0.041836773 2.16E-06 5.666395925 0.200382707 AALS(ph)SSELLELGDSLMR ddPTM_HeLa_A486_30min_R1 1 AALSSSELLELGDSLMR 17 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 AALS(0.945)S(0.028)S(0.028)ELLELGDSLMR 70.529 0.0076751 13247000 8397.7 11527 8645.3 5186.8 12818 10760 13813 11437 8847.8 12303 TRUE FALSE FALSE 7809.064596 10613.55854 11992.99169 12075.13253 11210.24692 9432.5406 10356.8413 8833.044768 9614.734428 9222.248721 0.846763607 1.150864487 1.300441145 1.309347958 1.21556545 1.022802668 1.123027758 0.957797283 1.042558569 1 13.17090286 -6.26797091 24.22679987 1.032461481 1.179422308 0.218904249 0.126228329 546.5912138 2027413.286 0.046747796 0.042237055 5.40E-07 6.26797091 0.146960827 AALSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 AALSSPR 7 0 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 AALS(0.008)S(0.992)PR 93.162 0.0061038 1772600000 2287100 2709700 3072900 2305200 3502000 2536800 2941200 2936000 2706100 3052800 TRUE FALSE FALSE 2795857.505 3026575.844 4209693.584 2431127.239 3153328.584 2669622.925 2312788.593 2215941.397 3249189.448 2291793.143 1.219943219 1.320614757 1.836855825 1.060796978 1.375921991 1.164862079 1.009161145 0.966902883 1.417749878 1 21.1280454 -5.988747458 1.366811544 1.099227503 1.413199425 0.250110078 0.218449377 0.584220404 2.255832414 0.091895771 0.104548985 1.03E-06 5.988747458 0.313971921 AALSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AALSSPR 7 0 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 AALS(0.155)S(0.845)PR 106.36 0.0033673 670960000 795940 918500 891100 286110 1137100 858520 972590 919990 785390 836560 TRUE FALSE FALSE 740148.7162 845714.7149 1236157.784 666078.5392 994474.315 752604.5312 729237.695 710528.3602 853468.2376 627079.9309 1.180310005 1.348655368 1.971292213 1.062190809 1.585881266 1.200173206 1.162910275 1.133074629 1.361019856 1 19.25828982 -6.370634099 7.206471058 1.176691963 1.434407789 0.220678505 0.242719775 0.431770519 25.26765303 0.084619148 0.074459363 4.26E-07 6.370634099 0.257715826 AAMYDIISS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 AAMYDIISSPSK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AAMYDIISS(0.998)PS(0.002)K;AAMYDIIS(0.138)S(0.861)PS(0.001)K ; 198.23 5.60E-17 350310000 1021730 868350 695150 1442420 1018630 779090 1121220 878990 812300 1698750 TRUE FALSE FALSE 1249010.314 969895.9789 952314.9126 1521215.752 917211.6206 819881.9477 881662.1875 663416.3243 975321.1591 1275282.888 0.97939863 0.760533986 0.746747974 1.192845734 0.719222087 0.642902022 0.691346364 0.520211108 0.764788086 1 20.28238588 -5.967618852 24.99982429 0.690634419 0.903620634 0.244477901 0.163402909 250.4340293 193346.2231 0.049435067 0.056053747 1.08E-06 5.967618852 0.212986215 AAMYDIISS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 AAMYDIISSPSK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AAMYDIISS(1)PSK;AAMYDIISS(1)PSK ; 300.49 5.40E-50 378350000 1418880 1595960 750700 558760 1097770 1573980 1712490 1515030 1240710 1894550 TRUE FALSE FALSE 1319423.839 1469490.317 1041391.144 1300821.518 960077.4503 1379798.351 1284006.889 1170090.742 1348255.742 1420142.349 0.929078582 1.034748607 0.733300535 0.915979669 0.67604311 0.971591582 0.904139568 0.82392497 0.949380703 1 20.43760412 -9.754394346 9.849762335 1.000000018 0.878652477 0.103378746 0.103809781 0 0 0.098195923 0.023816009 1.76E-10 9.754394346 -0.121347541 AAMYDIISS(ph)PSKDSTK ddPTM_HeLa_A485_30min_R1 3 AAMYDIISSPSKDSTK 16 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AAMYDIISS(0.995)PS(0.005)KDSTK;AAMYDIIS(0.133)S(0.853)PS(0.013)KDSTK;AAMYDIIS(0.126)S(0.873)PS(0.001)KDSTK ;; 199.41 2.02E-25 4421560000 2948930 2370100 1447250 4900880 3296060 3144960 5442480 5121690 2201260 6439630 TRUE FALSE FALSE 3604909.305 2647262.578 1982648 5168602.665 2967892.693 3309625.243 4279649.687 3865587.497 2643032.691 4834348.754 0.745686645 0.547594456 0.410116874 1.069141456 0.613917788 0.684606223 0.885258782 0.799608736 0.546719491 1 22.20489012 -14 0.10481953 1.858430391 0.532414863 0.187719378 0.180666741 304.8147577 2.14667342 57.99704546 2.667516627 1.00E-14 14 -1.326015528 AAMYDIISS(ph)PSKDSTK ddPTM_HeLa_A486_30min_R1 2 AAMYDIISSPSKDSTK 16 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AAMYDIIS(0.178)S(0.723)PS(0.097)KDS(0.001)T(0.001)K;AAMYDIIS(0.009)S(0.99)PS(0.001)KDSTK ; 225.69 2.73E-34 1985970000 2018060 1783650 738460 1082490 1527970 2238120 3004360 2792870 1391870 3444420 TRUE FALSE FALSE 1876604.415 1642307.078 1024411.489 2520091.426 1336317.755 1962003.51 2252637.351 2156994.469 1512518.412 2581914.813 0.72682662 0.636081047 0.396764248 0.976055218 0.517568492 0.759902496 0.872467728 0.835424336 0.585812671 1 21.30000997 -14 0.096422097 1.941590491 0.489007207 0.243603094 0.163065084 273.4482322 1.804668998 52.2492735 3.046465196 1.00E-14 14 -1.452583285 AANMLQQS(ph)GSK ddPTM_HeLa_A485_30min_R1 2 AANMLQQSGSK 11 0 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 1 0 AANMLQQS(0.997)GS(0.003)K;AANMLQQS(0.984)GS(0.016)K ; 132.31 3.55E-05 334880000 464260 430640 327110 632280 590160 491160 661380 628630 415160 849450 TRUE FALSE FALSE 567533.0353 480999.6019 448121.6012 666819.8554 531401.5982 516876.3781 520070.76 474457.5068 498478.8039 637697.748 0.889971836 0.754275209 0.702717867 1.045667571 0.833312647 0.810535053 0.815544295 0.744016281 0.781685062 1 19.28251326 -11.3272696 2.212167511 1.959829632 0.818801363 0.264162262 0.090239939 6345099.259 952520.7456 30357621.55 0.023401945 4.71E-12 11.3272696 -1.141028269 AANMLQQS(ph)GSK ddPTM_HeLa_A486_30min_R1 3 AANMLQQSGSK 11 0 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 1 0 AANMLQQS(0.997)GS(0.003)K;AANMLQQS(0.993)GS(0.007)K;AANMLQQS(0.999)GS(0.001)K ;; 222.81 6.18E-18 433360000 1080070 1000080 624920 434710 1065860 1229360 1440140 1305400 790380 1413090 TRUE FALSE FALSE 1004362.67 920830.0186 866905.7599 1012026.849 932169.9001 1077694.062 1079801.74 1008188.917 858890.7748 1059243.066 0.948189044 0.869328342 0.818420047 0.955424568 0.880033988 1.017419039 1.019408835 0.95180129 0.810853337 1 20.01460225 -5.834301011 1.947319322 0.957531075 0.88396903 0.155832507 0.067969935 0.605313328 4.720559344 0.02474368 0.030595744 1.46E-06 5.834301011 -0.073562044 AANQVEETLHTHLPQT(ph)PETNFR ddPTM_HeLa_A485_30min_R1 2 AANQVEETLHTHLPQTPETNFR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 AANQVEETLHTHLPQT(0.999)PET(0.001)NFR;AANQVEETLHTHLPQT(1)PETNFR ; 186.13 2.59E-19 1065370000 310870 444780 402440 294010 498760 339690 398280 410790 352680 333890 TRUE FALSE FALSE 380021.959 496793.1519 551319.3029 310071.0218 449101.7031 357475.6431 313184.2244 310043.1084 423459.641 250657.3678 1.516101291 1.981961098 2.199493706 1.237031349 1.791695601 1.426152546 1.249451501 1.236919988 1.689396345 1 17.93535712 -5.894768499 0.989466971 1.310415973 1.865848755 0.364340264 0.28620277 0.596469782 1.262704278 0.139707283 0.187062446 1.27E-06 5.894768499 0.555432782 AANQVEETLHTHLPQT(ph)PETNFR ddPTM_HeLa_A486_30min_R1 2 AANQVEETLHTHLPQTPETNFR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 AANQVEETLHTHLPQT(0.996)PET(0.004)NFR;AANQVEETLHTHLPQT(1)PETNFR ; 149.16 2.66E-09 528960000 413210 425910 370630 130349 487450 439736 441611 478470 346246 407742 TRUE FALSE FALSE 384246.1128 392159.3405 514147.8618 303459.0595 426309.4757 385485.8432 331115.2569 369532.8259 376258.8821 305640.7492 1.257182211 1.283072828 1.682196707 0.992861915 1.394805754 1.261238379 1.083347877 1.209043057 1.231049469 1 18.22147738 -7.547647445 0.237385946 0.951857989 1.413759034 0.247796832 0.166004526 3.15961364 0.786956327 0.572779694 0.518211634 2.83E-08 7.547647445 0.461901044 AANRT(ph)PPKS(ph)PGDPSKDR ddPTM_HeLa_A486_30min_R1 1 AANRTPPKSPGDPSKDR 17 3 O94811 O94811 TPPP Tubulin polymerization-promoting protein 2 0 AANRT(1)PPKS(0.984)PGDPS(0.017)KDR 45.011 0.028023 113230000 66238 59083 27355 57580 57882 87823 114890 108150 50563 167580 TRUE FALSE FALSE 61595.05825 54401.0479 37947.58859 134049.1499 50621.89983 76988.29118 86143.30682 83526.6059 54945.84155 125616.8772 0.490340626 0.433071169 0.30208989 1.067126909 0.402986453 0.612881747 0.685762206 0.664931399 0.437408116 1 16.93867078 -14 0.175350192 2.628985807 0.482683195 0.285108868 0.204135279 180.1209402 1.717843929 103.0141103 0.681099189 1.00E-14 14 -2.146302612 AAPAQVRPPS(ph)PGNIRPVK ddPTM_HeLa_A485_30min_R1 2 AAPAQVRPPSPGNIRPVK 18 2 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK ; 133.98 2.55E-06 6276000000 222057 201497 219778 361874 265964 190355 240711 231040 223603 365230 TRUE FALSE FALSE 271452.8136 225060.3214 301083.0279 381642.2603 239483.6903 200321.6935 189281.1284 174377.0777 268478.0711 274184.8826 0.990035669 0.820834173 1.098102219 1.391915764 0.873438711 0.73060809 0.690341228 0.63598356 0.979186265 1 18.0647895 -5.987277153 24.99836551 0.77992935 1.067934682 0.35113623 0.170971974 251.5292417 494211.8748 0.055345954 0.062721248 1.03E-06 5.987277153 0.288005332 AAPAQVRPPS(ph)PGNIRPVK ddPTM_HeLa_A486_30min_R1 4 AAPAQVRPPSPGNIRPVK 18 2 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK;AAPAQVRPPS(1)PGNIRPVK ;;; 189.98 1.98E-18 7577820000 588957 743552 556473 287904 703606 683503 709050 703542 731017 851152 TRUE FALSE FALSE 547674.1557 684630.2316 771954.2485 670255.0619 615353.1746 599179.3492 531638.1904 543360.8448 794382.1421 638017.9991 0.858399225 1.073057864 1.209925503 1.050526886 0.964476199 0.939126091 0.833265192 0.85163874 1.24507795 1 19.2832376 -5.757452255 5.189301288 0.955617509 1.062278287 0.061283877 0.13241609 0.402480018 31.22105288 0.041536246 0.050874542 1.75E-06 5.757452255 0.106660779 AAPAQVRPPS(ph)PGNIRPVKR ddPTM_HeLa_A485_30min_R1 1 AAPAQVRPPSPGNIRPVKR 19 3 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AAPAQVRPPS(1)PGNIRPVKR 172.24 9.19E-13 3839300000 320990 436470 393190 369350 455540 486960 421290 623290 300640 429280 TRUE FALSE FALSE 392393.1181 487511.3697 538647.343 389526.6553 410184.8381 512456.4726 331277.9499 470427.1502 360975.6904 322268.3963 1.217597265 1.512749544 1.671424655 1.208702621 1.272805037 1.590154289 1.027956677 1.45973715 1.120108874 1 18.29790319 -8.017221546 0.39065511 0.970438839 1.441702952 0.300618158 0.187839407 1.816087308 0.739632033 0.303717893 0.160739695 9.61E-09 8.017221546 0.471264113 AAPAQVRPPS(ph)PGNIRPVKR ddPTM_HeLa_A486_30min_R1 2 AAPAQVRPPSPGNIRPVKR 19 3 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AAPAQVRPPS(1)PGNIRPVKR;AAPAQVRPPS(1)PGNIRPVKR ; 145.02 2.22E-08 20540700000 1672560 1943510 1419330 627890 2195280 1467060 1661630 1736600 1447120 1774110 TRUE FALSE FALSE 1555322.181 1789499.189 1968932.587 1461759.652 1919927.512 1286069.053 1245872.599 1341214.09 1572557.527 1329861.308 1.169537132 1.345628434 1.480554833 1.099182029 1.443705069 0.967070058 0.936844009 1.008536816 1.18249739 1 20.34284436 -6.272261792 24.99362614 1.01438909 1.307843767 0.5827699 0.122121901 518.4019918 1197210.754 0.042248609 0.037616478 5.34E-07 6.272261792 0.293454678 AAPEAK(ac)K ddPTM_HeLa_A485_30min_R1 1 AAPEAKK 7 1 P19338 P19338 NCL Nucleolin 0 1 AAPEAK(1)K 116.88 0.019143 95126000 101710 114950 82725 128180 120610 121020 145060 185880 132430 182780 FALSE TRUE FALSE 124335.0386 128392.4026 113328.42 135182.1488 108601.6449 127356.4201 114066.746 140292.6386 159007.4863 137216.3098 0.906124343 0.935693452 0.825910711 0.985175516 0.791463093 0.928143456 0.831291456 1.022419556 1.158808938 1 17.06609245 -7.43471179 4.798585719 1.083419359 0.88829485 0.603707384 0.065570422 0.131107307 5.07777443 0.035715094 0.015996169 3.68E-08 7.43471179 -0.195124509 AAPEAS(ph)SPPAS(ph)PLQHLLPGK ddPTM_HeLa_A485_30min_R1 4 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 AAPEAS(0.502)S(0.502)PPAS(0.996)PLQHLLPGK;AAPEAS(0.501)S(0.501)PPAS(0.998)PLQHLLPGK;AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK;AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK ;;; 143.31 2.27E-09 890330000 1000090 1148910 962320 1088280 1391370 1194830 1494910 1499210 1003440 1443230 TRUE FALSE FALSE 1222556.57 1283265.03 1318322.213 1147729.981 1252840.317 1257389.451 1175510.266 1131526.397 1204821.204 1083459.322 1.12838253 1.184414592 1.216771306 1.059319863 1.156333507 1.160532219 1.084960222 1.044364448 1.112013326 1 20.04721356 -7.514226506 0.334024675 0.99101044 1.179686499 0.531424629 0.044023909 1.072979567 0.396745211 0.074272934 0.062193668 3.06E-08 7.514226506 0.188676059 AAPEAS(ph)SPPAS(ph)PLQHLLPGK ddPTM_HeLa_A486_30min_R1 5 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 AAPEAS(0.501)S(0.501)PPAS(0.999)PLQHLLPGK;AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK;AAPEAS(0.707)S(0.294)PPAS(0.999)PLQHLLPGK;AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK;AAPEAS(0.845)S(0.155)PPAS(1)PLQHLLPGK ;;;; 165.62 2.08E-13 1185337000 1078180 1199630 847740 437252 1283250 1101400 1262960 1313130 976437 1281140 TRUE FALSE FALSE 1002605.15 1104566.95 1176007.631 1017944.753 1122292.819 965520.4662 946954.0498 1014158.964 1061075.345 960334.2052 1.04401691 1.150190157 1.224581635 1.059990103 1.168648178 1.005400475 0.986067189 1.056047946 1.104902168 1 19.87317704 -6.26517018 24.98207589 1.031210527 1.132057937 0.426515314 0.057357466 323.3287738 2165053.833 0.020155711 0.018466337 5.43E-07 6.26517018 0.100847409 AAPEAS(ph)SPPASPLQHLLPGK ddPTM_HeLa_A486_30min_R1 1 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AAPEAS(0.5)S(0.5)PPASPLQHLLPGK 157.15 2.93E-10 84203000 118140 110210 91359 22417 130210 96564 120670 120080 94806 99996 TRUE FALSE FALSE 109858.9961 101476.5582 126735.6515 52187.90889 113877.8476 84650.91547 90477.08968 92740.40533 103023.8604 74956.35074 1.465639602 1.35380868 1.690792711 0.696243992 1.519255494 1.129336136 1.207063695 1.23725881 1.374451389 1 16.1937631 -5.18234965 24.99999999 1.190946043 1.488452585 0.323715929 0.221008261 139.7961042 44187.7833 0.056441624 0.097759756 6.57E-06 5.18234965 0.297506542 AAPEASS(ph)PPAS(ph)PLQHLLPGK ddPTM_HeLa_A485_30min_R1 6 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 AAPEAS(0.085)S(0.915)PPAS(1)PLQHLLPGK;AAPEAS(0.397)S(0.603)PPAS(1)PLQHLLPGK;AAPEAS(0.102)S(0.898)PPAS(1)PLQHLLPGK;AAPEAS(0.181)S(0.819)PPAS(1)PLQHLLPGK;AAPEAS(0.466)S(0.537)PPAS(0.997)PLQHLLPGK;AAPEAS(0.385)S(0.616)PPAS(1)PLQHLLPGK ;;;;; 195.7 5.01E-20 6129720000 2340635 2742540 2273553 2648440 3330330 2773310 3398790 3624770 2423147 3393480 TRUE FALSE FALSE 2861301.181 3063256.196 3114634.865 2793117.571 2998750.652 2918516.223 2672610.751 2735789.474 2909450.376 2547547.888 1.123158938 1.202433214 1.222601106 1.09639453 1.177112574 1.145617806 1.049091467 1.073891284 1.14205915 1 21.28067784 -7.5370121 0.260553443 0.98219301 1.205233296 0.523684273 0.045646136 1.520860828 0.421139908 0.12942232 0.116227401 2.90E-08 7.5370121 0.223040286 AAPEASS(ph)PPAS(ph)PLQHLLPGK ddPTM_HeLa_A486_30min_R1 7 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 AAPEAS(0.477)S(0.552)PPAS(0.97)PLQHLLPGK;AAPEAS(0.469)S(0.535)PPAS(0.997)PLQHLLPGK;AAPEAS(0.447)S(0.553)PPAS(1)PLQHLLPGK;AAPEAS(0.444)S(0.557)PPAS(1)PLQHLLPGK;AAPEAS(0.465)S(0.542)PPAS(0.994)PLQHLLPGK;AAPEAS(0.107)S(0.893)PPAS(1)PLQHLLPGK;AAPEAS(0.487)S(0.554)PPAS(0.959)PLQHLLPGK ;;;;;; 155.97 5.42E-10 4593526000 1579085 1707725 1231168 617006 1801847 1569395 1778302 1777055 1255266 1759057 TRUE FALSE FALSE 1468399.296 1572398.652 1707909.221 1436421.15 1575842.548 1375779.001 1333352.031 1372458.369 1364073.468 1318577.678 1.113623657 1.192496034 1.295266294 1.089371657 1.195107861 1.04338108 1.011204765 1.040862736 1.034503686 1 20.33055113 -6.308097838 4.946992925 1.025805814 1.179977383 0.674219781 0.052585622 0.128641529 7.380184984 0.018947675 0.016928114 4.92E-07 6.308097838 0.15417157 AAPEASS(ph)PPASPLQHLLPGK ddPTM_HeLa_A485_30min_R1 4 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AAPEAS(0.419)S(0.581)PPASPLQHLLPGK;AAPEAS(0.423)S(0.577)PPASPLQHLLPGK;AAPEAS(0.417)S(0.583)PPASPLQHLLPGK;AAPEAS(0.419)S(0.581)PPASPLQHLLPGK ;;; 258.55 8.39E-59 28021110000 6477160 8511430 7531850 6082110 10329520 8919330 10175170 10744750 7790950 9418290 TRUE FALSE FALSE 7917981.896 9506767.699 10318194.74 6414360.269 9301076.72 9386332.327 8001161.806 8109583.215 9354522.202 7070483.634 1.119864256 1.344571063 1.459333657 0.907202477 1.315479563 1.327537523 1.131628644 1.146963013 1.32303852 1 22.75337747 -13.07122943 0.29938038 1.61E-12 1.244102013 0.168758115 0.150355103 267.7371454 4.209358674 165.7716713 0.153422185 8.49E-14 13.07122943 1.244102013 AAPEASS(ph)PPASPLQHLLPGK ddPTM_HeLa_A486_30min_R1 4 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AAPEAS(0.411)S(0.589)PPASPLQHLLPGK;AAPEAS(0.421)S(0.579)PPASPLQHLLPGK;AAPEAS(0.436)S(0.564)PPASPLQHLLPGK;AAPEAS(0.427)S(0.573)PPASPLQHLLPGK ;;; 246.34 1.34E-46 24793070000 9365210 9500760 7708150 1136636 11185240 7988860 10042150 10013060 8109370 7905460 TRUE FALSE FALSE 8708757.141 8747885.176 10692952.11 2646146.05 9782282.901 7003275.678 7529497.855 7733304.822 8812296.721 5925881.36 1.46961382 1.476216725 1.804449239 0.446540504 1.650772654 1.181811658 1.270612319 1.305005003 1.487086255 1 22.49859831 AAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFK ddPTM_HeLa_A485_30min_R1 2 AAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFK 38 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 292.44 8.60E-94 105736000 14635.5 13525 13913.9 8089.7 49589 28085 38043 36827 13549.8 107310 FALSE FALSE TRUE 17891.11648 15106.6311 19061.23062 8531.619827 44651.74504 29555.48717 29914.80227 27795.12051 16269.12057 80559.59189 0.222085491 0.187521197 0.236610317 0.105904457 0.554269752 0.36687732 0.37133756 0.345025587 0.201951378 1 16.29776875 -14 0.266322578 5.704781814 0.240594917 0.755922324 0.121143333 104.1102155 1.017454926 269.0537617 0.162201122 1.00E-14 14 -5.464186897 AAPGAEFAPNK(ac)R ddPTM_HeLa_A485_30min_R1 2 AAPGAEFAPNKR 12 1 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 1 ; AAPGAEFAPNK(1)R;AAPGAEFAPNK(1)R 235.32 1.43E-28 132195000 21197 31149 38279 24809 41888 44941 65152 94632 103592 124514 FALSE TRUE FALSE 25912.19952 34791.60459 52439.99502 26164.25285 37717.48364 47294.04127 51231.74296 71423.35362 124381.9642 93474.95131 0.277210088 0.372202436 0.561005855 0.279906568 0.403503646 0.505954169 0.548079911 0.764090835 1.330644867 1 16.51229219 -7.416097417 1.97124482 1.161213243 0.407095834 0.851357443 0.123782536 0.11993689 0.847306882 0.097016246 0.034304151 3.84E-08 7.416097417 -0.754117409 down AAPGAEFAPNK(ac)R ddPTM_HeLa_A486_30min_R1 2 AAPGAEFAPNKR 12 1 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 1 ; AAPGAEFAPNK(1)R;AAPGAEFAPNK(1)R 255.39 1.08E-38 223830000 74715 116806 117500 40652 143621 102044 116365 132493 115599 138342 FALSE TRUE FALSE 69477.86433 107549.8672 162999.1468 94639.91044 125606.715 89454.84879 87249.24622 102327.2362 125619.2144 103700.2627 0.669987351 1.037122417 1.571829641 0.912629418 1.211247799 0.86262895 0.841359934 0.986759662 1.211368333 1 16.66206002 -6.263347898 24.9565653 0.970904395 1.096112849 0.041129776 0.233606016 569.7651768 7450419.494 0.0826358 0.076602045 5.45E-07 6.263347898 0.125208454 AAPGAEFAPNKR ddPTM_HeLa_A485_30min_R1 2 AAPGAEFAPNKR 12 1 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 ; ; 143.79 0.00017606 37231000 54871 74874 62575 59734 85709 78543 91549 102495 72856 87214 FALSE FALSE TRUE 67076.86465 83629.86298 85724.09646 62997.11717 77175.51102 82655.39003 71988.80826 77357.94054 87477.53093 65473.15485 1.024494158 1.277315308 1.309301448 0.962182398 1.178735181 1.262431759 1.099516411 1.181521506 1.336082416 1 15.99861588 -5.979637208 24.99934485 1.186714611 1.152963462 0.010144653 0.127805865 1606.121084 1971819.925 0.039708766 0.04502179 1.05E-06 5.979637208 -0.033751149 AAPLDSIHSLAAYYIDCIR ddPTM_HeLa_A485_30min_R1 2 AAPLDSIHSLAAYYIDCIR 19 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ; ; 240.79 2.27E-37 83582000 46991 68539 93749 41732.8 100366 55049 69456 61648 70255 87432 FALSE FALSE TRUE 57443.98583 76554.03984 128430.6563 44012.55719 90373.20863 57931.28052 54616.1582 46528.73134 84354.53408 65636.81147 0.875179408 1.166327829 1.9566864 0.67054685 1.376867746 0.882603515 0.832096456 0.708881652 1.285171114 1 16.00221754 -6.277313811 23.99539074 0.916702234 1.218354767 0.128771162 0.344245224 955.107624 1443710.892 0.120162776 0.10635726 5.28E-07 6.277313811 0.301652533 AAPLDSIHSLAAYYIDCIR ddPTM_HeLa_A486_30min_R1 1 AAPLDSIHSLAAYYIDCIR 19 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 256.45 4.32E-47 69113000 50179 76521 74017 5446.8 87629 61521 65494 64804 73499 44337 FALSE FALSE TRUE 46661.71122 70457.19728 102678.3646 12680.42567 76637.75371 53931.16452 49106.70848 50049.54386 79869.9525 33234.72661 1.404004666 2.119987268 3.089490274 0.381541446 2.305954088 1.622735314 1.477572211 1.505941193 2.403207748 1 15.02040387 -5.242189588 24.99977526 1.583460628 2.196043136 0.174924812 0.66551789 1590.635858 2065762.092 0.174925793 0.30238681 5.73E-06 5.242189588 0.612582508 AAPPPPPPPPPLES(ph)SPR ddPTM_HeLa_A485_30min_R1 2 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR ; 115.82 7.25E-05 241123000 33776 45362 47254 23272.6 63733 52032.8 53126 78252 43652 40442 TRUE FALSE FALSE 41289.35467 50666.6913 64735.221 24543.92321 57387.51874 54757.15695 41775.1961 59060.57431 52412.556 30360.55368 1.359967118 1.668832915 2.132214771 0.808414875 1.890200006 1.803562528 1.375969508 1.945306233 1.726337291 1 14.88991048 -10.27553441 4.272769928 0.999486428 1.639909311 0.221488732 0.35676056 236802494.8 1025.278108 1196616.996 0.083287055 5.30E-11 10.27553441 0.640422883 AAPPPPPPPPPLES(ph)SPR ddPTM_HeLa_A486_30min_R1 1 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AAPPPPPPPPPLES(0.579)S(0.421)PR 119.62 5.09E-06 0 45633 31659 13070 27138 35121 23655 31867 39767 19880 47451 TRUE FALSE FALSE 42434.36235 29150.22554 18131.05403 63178.63548 30715.79669 20736.68661 23893.53955 30712.92221 21603.21441 35568.96075 1.193016649 0.819541109 0.50974371 1.776229447 0.863556203 0.582999508 0.671752535 0.863475389 0.607361417 1 15.1183312 -5.993696852 24.99546504 0.73103049 1.054041369 0.18962009 0.319801094 289.4277646 1147730.139 0.100419835 0.113577251 1.01E-06 5.993696852 0.323010879 AAPPPPPPPPPLESS(ph)PR ddPTM_HeLa_A485_30min_R1 4 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AAPPPPPPPPPLES(0.201)S(0.799)PR;AAPPPPPPPPPLES(0.176)S(0.824)PR;AAPPPPPPPPPLES(0.194)S(0.806)PR;AAPPPPPPPPPLES(0.267)S(0.733)PR ;;; 186.56 9.48E-18 4349000000 497938 553623 492574 564756 627018 562062 664817 612288 499604 734022 TRUE FALSE FALSE 608702.5902 618364.394 674797.6203 595607.1902 564589.8863 591490.6972 522773.4169 462123.408 599869.9402 551043.8241 1.104635536 1.122169176 1.224580679 1.08087082 1.02458255 1.073400465 0.948696626 0.838632769 1.088606593 1 19.07180753 -6.036969874 1.183595313 0.963624912 1.146195784 0.488426973 0.071432586 0.377041347 1.106684751 0.033370562 0.037005425 9.18E-07 6.036969874 0.182570871 AAPPPPPPPPPLESS(ph)PR ddPTM_HeLa_A486_30min_R1 4 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AAPPPPPPPPPLES(0.185)S(0.815)PR;AAPPPPPPPPPLES(0.184)S(0.816)PR;AAPPPPPPPPPLES(0.186)S(0.814)PR;AAPPPPPPPPPLES(0.477)S(0.523)PR ;;; 172.96 1.13E-12 1507100000 310464 438018 261966 72471 360518 376037 334318 441329 353704 307678 TRUE FALSE FALSE 288702.0768 403307.8584 363406.2509 168716.1505 315298.4707 329645.3782 250668.1003 340848.0208 384363.3475 230633.4262 1.251778988 1.748696471 1.575687692 0.731533817 1.367097892 1.429304432 1.086868042 1.477877802 1.666555251 1 17.8152421 AAPQS(ph)PSVPK ddPTM_HeLa_A485_30min_R1 6 AAPQSPSVPK 10 0 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 1 0 AAPQS(0.679)PS(0.321)VPK;AAPQS(0.917)PS(0.083)VPK;AAPQS(1)PSVPK;AAPQS(0.997)PS(0.003)VPK;AAPQS(0.984)PS(0.016)VPK;AAPQS(0.996)PS(0.004)VPK ;;;;; 250.13 1.29E-21 18810660000 16450640 12876650 11900910 21142390 18052260 13243560 18542750 14640020 13769910 26465750 TRUE FALSE FALSE 20110028.11 14382462.21 16303551.85 22297345.23 16254913.61 13936972.32 14580939.98 11049532.14 16533404.63 19868325.59 1.012165219 0.723888993 0.820580062 1.122255881 0.818132033 0.701466878 0.733878651 0.556138065 0.832148867 1 24.24396696 -5.998128504 24.99992787 0.737806262 0.907595462 0.190174707 0.145023815 92.05215446 1229622.421 0.044656914 0.050298919 1.00E-06 5.998128504 0.1697892 AAPQS(ph)PSVPK ddPTM_HeLa_A486_30min_R1 6 AAPQSPSVPK 10 0 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 1 0 AAPQS(1)PSVPK;AAPQS(0.999)PS(0.001)VPK;AAPQS(0.998)PS(0.002)VPK;AAPQS(0.931)PS(0.069)VPK;AAPQS(0.999)PS(0.001)VPK;AAPQS(0.996)PS(0.004)VPK ;;;;; 228.74 2.30E-17 17965600000 12067880 13236690 7637540 4601680 11096330 12834980 14621190 13188890 9679620 13655090 TRUE FALSE FALSE 11221983.93 12187766.48 10595000.03 10712943.6 9704524.822 11251530.66 10962813.61 10186067.66 10518657.26 10235766.58 1.096350121 1.19070383 1.0350959 1.046618591 0.948099465 1.099236737 1.071030052 0.995144582 1.027637468 1 23.28711582 -4.780253162 23.09801974 1.029596987 1.143526887 0.516129264 0.044773112 67.11272264 82396.02881 0.011638454 0.024317384 1.66E-05 4.780253162 0.1139299 AAPQS(ph)PSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLK ddPTM_HeLa_A486_30min_R1 2 AAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLK 38 2 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 1 0 AAPQS(0.958)PS(0.041)VPKKPGPPVLS(0.001)S(0.001)DPNMLSNEEAGHHFEQMLK;AAPQS(0.855)PS(0.145)VPKKPGPPVLSSDPNMLSNEEAGHHFEQMLK ; 157.16 8.13E-11 1761020000 658620 487320 256746 108173 687960 479900 712390 739500 346820 710710 TRUE FALSE FALSE 612454.1391 448702.9884 356164.9271 251832.2108 601669.6418 420694.8173 534142.4871 571131.9932 376882.6368 532743.5901 1.149622728 0.842249436 0.668548498 0.472708101 1.129379411 0.789675981 1.002625836 1.072057935 0.707437206 1 19.0230818 -5.794668192 24.9995908 0.948394281 0.779297639 0.14805636 0.196028295 383.2145775 288308.2484 0.062329096 0.070678846 1.60E-06 5.794668192 -0.169096643 AAPSTAPAEAT(ph)PPKPGEAEAPPK ddPTM_HeLa_A485_30min_R1 1 AAPSTAPAEATPPKPGEAEAPPK 23 1 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAPSTAPAEAT(1)PPKPGEAEAPPK 130.23 3.07E-06 262800000 268250 149510 117210 608390 248680 196330 312330 210010 223000 798190 TRUE FALSE FALSE 327921.287 166993.8939 160570.8565 641624.8052 223920.546 206609.5352 245598.144 158504.7182 267754.0545 599215.9226 0.547250623 0.278687344 0.267968274 1.070773958 0.373689246 0.344799808 0.409865851 0.264520204 0.446840687 1 19.19271643 -10.82127495 2.409468516 1.207058383 0.441867422 0.352107395 0.225847063 26707710.33 16262207.39 32066959.51 0.060512205 1.51E-11 10.82127495 -0.76519096 AAPSTAPAEAT(ph)PPKPGEAEAPPK ddPTM_HeLa_A486_30min_R1 1 AAPSTAPAEATPPKPGEAEAPPK 23 1 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAPS(0.009)T(0.008)APAEAT(0.983)PPKPGEAEAPPK 139.67 4.81E-07 430120000 338020 396100 189210 236310 308770 618560 659160 539120 343890 643860 TRUE FALSE FALSE 314326.5435 364711.5934 262477.1792 550141.6224 270041.1874 542248.3563 494231.1961 416374.1449 373698.6621 482633.2652 0.651274096 0.755670236 0.543843946 1.139875061 0.559516318 1.123520477 1.024030525 0.862713317 0.774291142 1 18.88056783 -5.246288824 24.99364783 0.917567557 0.660803509 0.358710098 0.168663752 947.6476615 1563318.156 0.04450149 0.076701233 5.67E-06 5.246288824 -0.256764048 AAPSTAPAEAT(ph)PPKPGEAEAPPKHPGVLK ddPTM_HeLa_A485_30min_R1 5 AAPSTAPAEATPPKPGEAEAPPKHPGVLK 29 2 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(0.999)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPS(0.026)T(0.053)APAEAT(0.921)PPKPGEAEAPPKHPGVLK ;;;; 223.4 1.00E-38 11808640000 4372110 2836200 1684540 6695530 4417610 4592390 7817880 7835610 3429470 8789220 TRUE FALSE FALSE 5344670.786 3167868.918 2307721.446 7061289.85 3977777.237 4832840.439 6147526.072 5913914.362 4117733.172 6598229.208 0.810015933 0.480108953 0.349748603 1.070179533 0.602855268 0.732445068 0.931693319 0.896288106 0.624066404 1 22.65364746 -5.254243306 24.9857301 0.822327703 0.539972956 0.354763853 0.178514936 638.1402335 2215702.703 0.04806442 0.081069674 5.57E-06 5.254243306 -0.282354747 AAPSTAPAEAT(ph)PPKPGEAEAPPKHPGVLK ddPTM_HeLa_A486_30min_R1 5 AAPSTAPAEATPPKPGEAEAPPKHPGVLK 29 2 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK;AAPSTAPAEAT(1)PPKPGEAEAPPKHPGVLK ;;;; 219.76 1.34E-38 13529540000 3580550 3199830 1312700 2165590 2885340 4299450 5771650 5141010 2451480 6134290 TRUE FALSE FALSE 3329571.935 2946263.817 1821012.595 5041602.963 2523433.752 3769027.573 4327522.124 3970514.25 2663976.26 4598223.856 0.724099574 0.640739535 0.396025216 1.096423993 0.548784451 0.81967031 0.941129066 0.86348868 0.579348971 1 22.13264527 -5.249044461 24.98509335 0.821650382 0.592333281 0.289648661 0.177411072 1049.819097 2116172.545 0.04688097 0.080488506 5.64E-06 5.249044461 -0.2293171 AAPT(ph)TPPPPVKR ddPTM_HeLa_A485_30min_R1 1 AAPTTPPPPVKR 12 1 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 AAPT(0.5)T(0.5)PPPPVKR 73.881 0.0085901 553170000 360330 378660 389230 447510 541560 399380 455270 467350 426450 630800 TRUE FALSE FALSE 440484.1654 422940.9931 533222.3742 471956.3381 487640.3849 420290.9192 357997.8453 352731.6797 512034.6034 473553.169 0.930168341 0.893122506 1.12600318 0.99662798 1.029747907 0.887526358 0.755982366 0.744861829 1.081261064 1 18.85316689 -6.33891253 5.872999519 0.867893061 0.996621131 0.153260503 0.111261341 0.358038847 21.17166192 0.040055771 0.035292434 4.58E-07 6.33891253 0.12872807 AAPTRGS(ph)PTK ddPTM_HeLa_A485_30min_R1 4 AAPTRGSPTK 10 1 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 AAPTRGS(0.984)PT(0.016)K;AAPTRGS(0.5)PT(0.5)K;AAPT(0.001)RGS(0.892)PT(0.106)K;AAPTRGS(0.75)PT(0.25)K ;;; 96.313 0.0011035 699800000 1531940 1458210 696920 2356390 836940 1557060 1566260 2031060 1423190 2799070 TRUE FALSE FALSE 1872714.768 1628734.975 954739.7093 2485113.619 753611.3149 1638585.254 1231615.756 1532939.35 1708811.179 2101313.362 0.891211564 0.775103325 0.454353799 1.182647797 0.358638235 0.779791003 0.586117129 0.729514873 0.813211018 1 21.00285989 -8.089748547 2.485881838 0.999324752 0.713581614 0.134735774 0.216655323 0.76748135 10.45743931 0.195163518 0.053006957 8.13E-09 8.089748547 -0.285743139 AAPTRGS(ph)PTK ddPTM_HeLa_A486_30min_R1 4 AAPTRGSPTK 10 1 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 AAPTRGS(0.5)PT(0.5)K;AAPTRGS(0.5)PT(0.5)K;AAPT(0.003)RGS(0.957)PT(0.04)K;AAPTRGS(0.967)PT(0.033)K ;;; 87.719 0.0017509 584929000 1363280 515810 900370 617400 575250 2249460 1151490 949340 1524880 1905410 TRUE FALSE FALSE 1267721.112 474935.3371 1249017.377 1437338.402 503096.781 1971944.496 863375.0228 733196.0059 1657057.826 1428282.934 0.887584023 0.332521888 0.874488763 1.006340108 0.35223888 1.380639962 0.604484589 0.513340871 1.160174771 1 20.44585037 -4.045972749 0.060755305 1.368237084 2.22E-08 0.066829947 0.320510632 529.8206923 4.76039698 32.67620498 83.07103476 9.00E-05 4.045972749 -1.368237062 AAPTT(ph)PPPPVK ddPTM_HeLa_A485_30min_R1 3 AAPTTPPPPVK 11 0 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 AAPT(0.012)T(0.988)PPPPVK;AAPT(0.13)T(0.87)PPPPVK;AAPT(0.16)T(0.84)PPPPVK ;; 115.18 0.0017713 1394500000 1753490 1675910 1828040 2536960 2558900 1899280 2366300 2203130 2027170 3536260 TRUE FALSE FALSE 2143547.801 1871893.096 2504308.067 2675547.701 2304126.931 1998723.364 1860720.674 1662808.913 2434004.425 2654735.462 0.807443089 0.705114737 0.943336202 1.007839666 0.867930897 0.752889843 0.700906249 0.626355785 0.916853848 1 21.34013668 -6.253931671 21.8274792 0.76989245 0.869515832 0.041826937 0.124765495 229.6353224 667626.7166 0.042753487 0.041793465 5.57E-07 6.253931671 0.099623382 AAPTT(ph)PPPPVK ddPTM_HeLa_A486_30min_R1 3 AAPTTPPPPVK 11 0 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 AAPT(0.169)T(0.831)PPPPVK;AAPT(0.015)T(0.985)PPPPVK;AAPT(0.013)T(0.987)PPPPVK ;; 103.34 0.0015189 791580000 1883820 2578610 1768790 867430 2705520 2485250 2673720 2792970 2206410 2450630 TRUE FALSE FALSE 1751773.946 2374271.552 2453712.858 2019420.877 2366168.454 2178645.123 2004726.976 2157071.701 2397663.395 1836976.297 0.953618154 1.292488943 1.335734632 1.099317874 1.288077836 1.185995228 1.091318913 1.174251243 1.305222827 1 20.80890158 -6.53136784 24.4803484 1.154567454 1.205466347 0.029507312 0.125314961 657.2814397 1895405.339 0.04686811 0.036370307 2.94E-07 6.53136784 0.050898893 AAPVLPTTHNHKVPVLIS(ph)PTLK ddPTM_HeLa_A485_30min_R1 2 AAPVLPTTHNHKVPVLISPTLK 22 1 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 AAPVLPTTHNHKVPVLIS(0.983)PT(0.017)LK;AAPVLPTTHNHKVPVLIS(0.998)PT(0.002)LK ; 117.82 3.55E-05 568120000 308100 399370 240449 359938 405550 454140 555980 651560 299380 458940 TRUE FALSE FALSE 376635.7821 446072.8474 329401.091 379600.5015 365172.018 477918.0682 437190.3311 491763.8884 359462.8199 344534.7042 1.093172263 1.294710931 0.956075214 1.101777258 1.059899086 1.387140577 1.268929736 1.427327588 1.043328337 1 18.39428978 -6.237994791 24.86548724 1.254777273 1.103859309 0.135936648 0.147455623 1204.993162 1278024.267 0.04693835 0.046913858 5.78E-07 6.237994791 -0.150917965 AAPVLPTTHNHKVPVLIS(ph)PTLK ddPTM_HeLa_A486_30min_R1 1 AAPVLPTTHNHKVPVLISPTLK 22 1 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 AAPVLPTTHNHKVPVLIS(0.879)PT(0.121)LK 161.49 6.11E-14 96510000 235750 186470 98641 62302 227290 186890 249790 249110 132370 303460 TRUE FALSE FALSE 219225.1424 171693.4381 136837.4369 145042.2046 198781.1688 163833.412 187289.9 192393.091 143843.9382 227471.6408 0.963747136 0.75479052 0.601558227 0.637627636 0.873872313 0.720236647 0.823354944 0.845789349 0.632359874 1 17.79532717 -10.86985279 2.555642437 1.111882586 0.759330575 0.292319441 0.111289896 37721130.75 22249684.86 25582137.98 0.028006957 1.35E-11 10.86985279 -0.352552011 AAPWGSNPS(ph)PSAESTQAMDR ddPTM_HeLa_A485_30min_R1 3 AAPWGSNPSPSAESTQAMDR 20 0 Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 AAPWGSNPS(0.984)PS(0.016)AESTQAMDR;AAPWGSNPS(0.85)PS(0.15)AESTQAMDR;AAPWGSNPS(0.882)PS(0.118)AESTQAMDR ;; 223.51 1.88E-35 548210000 230647 343467 325040 231035 363324 301934 335360 377003 270825 338566 TRUE FALSE FALSE 281953.6294 383632.4779 445285.822 243655.857 327150.1869 317742.7974 263707.5964 284542.4231 325177.0933 254167.727 1.109321127 1.509367386 1.751936909 0.958641995 1.287142906 1.250130381 1.037533755 1.119506502 1.279379948 1 17.95542133 -5.273165106 24.99859426 1.145471672 1.462124382 0.400205886 0.181119067 743.1209468 1584290.482 0.051025493 0.076399785 5.33E-06 5.273165106 0.31665271 AAPWGSNPS(ph)PSAESTQAMDR ddPTM_HeLa_A486_30min_R1 1 AAPWGSNPSPSAESTQAMDR 20 0 Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 AAPWGSNPS(0.61)PS(0.385)AES(0.004)T(0.001)QAMDR 99.569 3.38E-05 0 104450 112980 114450 52346 146890 88973 139430 129660 77775 112680 TRUE FALSE FALSE 97128.59438 104027.0533 158768.1051 121864.1334 128465.6865 77996.41587 104543.1393 100139.2485 84516.59962 84464.19458 1.149938088 1.231611263 1.879708981 1.442790451 1.520948458 0.923425793 1.237721377 1.185582234 1.000620441 1 16.36605227 -6.251220367 24.96215815 1.09158457 1.45717237 0.464227512 0.200801715 695.2908233 1698399.802 0.069903469 0.069189676 5.61E-07 6.251220367 0.3655878 AAQDFFS(ph)TCRSPEACCELTLQPLR ddPTM_HeLa_A486_30min_R1 1 AAQDFFSTCRSPEACCELTLQPLR 24 1 A0A494C1D8;A0A494C1T3;A0A494C007;H0Y5R6;A0A494C0S8;Q5T446;A0A494BZY8;A0A1B0GVN9;A0A1B0GVZ4;A0A494C0Q8;P06132 A0A494C1D8 UROD Uroporphyrinogen decarboxylase 1 0 AAQDFFS(0.379)T(0.379)CRS(0.243)PEACCELTLQPLR 68.76 0.0047006 28707000 9608.6 12891 10821 6494.5 14074 15350 15975 16800 9714.3 12158 TRUE FALSE FALSE 8935.086759 11869.47021 15011.181 15119.52421 12308.70769 13456.27307 11977.88603 12975.00674 10556.34335 9113.557665 0.980416988 1.302397005 1.647126353 1.659014489 1.350593055 1.476511541 1.314293109 1.423703807 1.158312015 1 13.15379863 -7.924434 2.917454464 1.00088252 1.408379655 0.336235728 0.182370813 0.276335234 4.910911675 0.184706627 0.04986316 1.19E-08 7.924434 0.407497135 AAQDFFSTCRS(ph)PEACCELTLQPLR ddPTM_HeLa_A486_30min_R1 2 AAQDFFSTCRSPEACCELTLQPLR 24 1 A0A494C1D8;A0A494C1T3;A0A494C007;H0Y5R6;A0A494C0S8;Q5T446;A0A494BZY8;A0A1B0GVN9;A0A1B0GVZ4;A0A494C0Q8;P06132 A0A494C1D8 UROD Uroporphyrinogen decarboxylase 1 0 AAQDFFS(0.23)T(0.164)CRS(0.606)PEACCELTLQPLR;AAQDFFS(0.226)T(0.162)CRS(0.612)PEACCELTLQPLR ; 164.6 2.64E-14 183567000 26977 46156 43299 22460 65061 39372 51561 47668 35503 39615 TRUE FALSE FALSE 25086.05161 42498.43046 60065.53239 52288.01507 56900.44271 34514.68295 38659.89244 36815.03699 38580.42863 29695.14615 0.844786265 1.431157478 2.022739073 1.760826999 1.916152977 1.162300491 1.301892648 1.239766149 1.299216661 1 14.85793951 -6.285727604 24.689494 1.221949119 1.61898402 0.283244056 0.311705964 974.7479388 990848.2441 0.116991095 0.103228132 5.18E-07 6.285727604 0.397034901 AAQDRDQIYR ddPTM_HeLa_A486_30min_R1 1 AAQDRDQIYR 10 1 P62995;P62995-3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 101.3 0.0053247 0 509850 504340 491350 180330 627090 510920 511450 562670 516070 529350 FALSE FALSE TRUE 474112.1479 464374.2616 681613.8788 419817.3534 548434.5248 447887.8851 383479.8004 434562.324 560803.3631 396797.3145 1.194847169 1.170305959 1.717788538 1.058014603 1.382152814 1.12875735 0.966437489 1.095174559 1.413324492 1 18.59804274 -6.306902629 9.769665841 1.116833825 1.306370584 0.177082146 0.198096645 1.060220545 223.1196504 0.069407521 0.061314459 4.93E-07 6.306902629 0.18953676 AAQEEYVK(ac)R ddPTM_HeLa_A485_30min_R1 2 AAQEEYVKR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ; AAQEEYVK(1)R;AAQEEYVK(1)R 186.41 5.35E-08 186058000 27761 43572 99670 33726 50351 44810 76918 75534 33631 83892 FALSE TRUE FALSE 33936.33868 48667.36637 136542.0806 35568.36598 45337.87765 47156.18231 60483.84094 57009.16807 40380.43322 62979.26832 0.538849364 0.772752172 2.168048062 0.564763087 0.719885747 0.748757227 0.960377003 0.905205309 0.64117025 1 15.94258938 AAQEEYVK(ac)R ddPTM_HeLa_A486_30min_R1 2 AAQEEYVKR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ; AAQEEYVK(1)R;AAQEEYVK(1)R 175.91 1.35E-07 101073000 29559 38560 89169 14558.1 44670 35937 62563 56046 35766 83133 FALSE TRUE FALSE 27487.06674 35504.36517 123697.6248 33891.99253 39067.07207 31503.45832 46909.07568 43285.54928 38866.22568 62315.95569 0.441091955 0.569747583 1.985007266 0.543873429 0.626919248 0.505544013 0.752761875 0.694614225 0.623696215 1 15.92731399 AAQEEYVKR ddPTM_HeLa_A485_30min_R1 4 AAQEEYVKR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 148.56 0.00011082 1256056000 907975 1126000 946540 1156700 1386410 1469210 1712180 2071480 1054380 1582610 FALSE FALSE TRUE 1109950.906 1257675.905 1296704.535 1219887.592 1248374.152 1546135.564 1346358.756 1563446.282 1265984.395 1188094.453 0.934227833 1.05856559 1.09141536 1.026759774 1.050736454 1.301357447 1.133208519 1.3159276 1.065558712 1 20.1802181 -6.097985411 9.397536944 1.180984196 1.035018487 0.303691767 0.09748123 0.433965871 38.76933698 0.030207704 0.03022918 7.98E-07 6.097985411 -0.145965709 AAQEEYVKR ddPTM_HeLa_A486_30min_R1 4 AAQEEYVKR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 107.45 0.0018483 773180000 1158175 1160754 862610 585371 1763137 1495379 1617274 1652342 1131767 1728189 FALSE FALSE TRUE 1076992.913 1068771.626 1196635.693 1362773.271 1541987.917 1310894.343 1212614.939 1276139.797 1229869.475 1295439.226 0.831372782 0.82502645 0.923729705 1.051977772 1.190320539 1.011930407 0.936064707 0.985102019 0.949384155 1 20.3050099 -4.984783889 3.269044654 1.020056931 0.829262108 0.567646205 0.066439696 0.191459839 4.264570618 0.020720988 0.045658445 1.04E-05 4.984783889 -0.190794823 AAQLAIR ddPTM_HeLa_A485_30min_R1 1 AAQLAIR 7 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 0 141.98 0.003683 75955000 85099 106840 115120 71593 134690 102950 117400 135980 104370 110410 FALSE FALSE TRUE 104028.979 119334.0086 157707.6785 75503.94431 121279.7907 108340.3028 92316.53093 102630.6918 125316.1017 82886.81895 1.255072643 1.439722384 1.902687068 0.910928242 1.463197553 1.307087233 1.113766122 1.238202806 1.51189421 1 16.33885508 -5.267699661 24.99882339 1.239895109 1.523216865 0.274160179 0.23084907 707.9747383 2827114.764 0.063641108 0.097111499 5.40E-06 5.267699661 0.283321755 AAQLAIR ddPTM_HeLa_A486_30min_R1 1 AAQLAIR 7 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 0 143.97 0.0035319 32025000 40285 45495 42852 14769 53068 42084 45625 42756 36874 42881 FALSE FALSE TRUE 37461.22953 41889.81051 59445.44202 34382.97838 46411.7166 36892.10396 34209.14243 33021.39216 40070.26801 32143.31849 1.165443747 1.303219844 1.849387207 1.069677308 1.443899348 1.147737872 1.064269156 1.027317455 1.246612668 1 14.97223126 -6.38106058 4.42448735 1.088957891 1.372801178 0.308770518 0.202474084 0.298432985 9.457448763 0.073575839 0.06421439 4.16E-07 6.38106058 0.283843287 AAQPPAQPCQLCGRS(ph)PLGEAPPGTPPCR ddPTM_HeLa_A485_30min_R1 1 AAQPPAQPCQLCGRSPLGEAPPGTPPCR 28 1 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 0 AAQPPAQPCQLCGRS(1)PLGEAPPGTPPCR 92.49 0.0010803 115520000 8621.8 14639 21511 12609 38478 21069 26457 35509 22585 18855 TRUE FALSE FALSE 10539.68967 16350.90371 29468.81405 13297.79774 34646.99522 22172.14026 20804.24582 26800.36207 27117.60234 14154.7955 0.744602044 1.155149413 2.081896135 0.939455306 2.447721355 1.566404846 1.469766611 1.893376847 1.915789058 1 13.78900329 -4.557536828 5.506805595 1.687208064 0.832660084 0.314386357 0.439622164 0.168049663 13.3390463 0.105403163 0.307377048 2.77E-05 4.557536828 -0.85454798 AAQPPAQPCQLCGRS(ph)PLGEAPPGTPPCR ddPTM_HeLa_A486_30min_R1 1 AAQPPAQPCQLCGRSPLGEAPPGTPPCR 28 1 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 0 AAQPPAQPCQLCGRS(1)PLGEAPPGTPPCR 82.988 0.0019606 156250000 14174 12515 22110 15174 39434 16069 29349 26722 18556 24784 TRUE FALSE FALSE 13180.47579 11523.26582 30671.58413 35325.83885 34487.82001 14086.57016 22005.56978 20637.98394 20164.44902 18577.92508 0.709469746 0.620266567 1.650969308 1.901495387 1.856387075 0.758242381 1.184500943 1.110887456 1.085398339 1 14.18130176 -6.291132387 24.98634874 1.044529807 1.354916701 0.129827476 0.412769878 1841.442071 1549547.888 0.165943125 0.146369174 5.12E-07 6.291132387 0.310386894 AAQQQQPSAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 AAQQQQPSASPR 12 0 Q86U86-8;Q86U86 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR ;;; 278.39 8.82E-41 2163920000 724010 1049270 1108090 839120 1213190 1071610 1131880 1308060 966460 1080940 TRUE FALSE FALSE 885063.5267 1171972.999 1518018.602 884959.0008 1092400.544 1127717.843 890044.5914 987256.234 1160419.657 811481.5512 1.090676092 1.444238624 1.870675433 1.090547283 1.346180381 1.389702379 1.096814327 1.216609586 1.43000128 1 19.63019877 AAQQQQPSAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 AAQQQQPSASPR 12 0 Q86U86-8;Q86U86 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR ;;; 289.44 1.25E-43 2190350000 847587 1032144 934888 327581 1188900 900153 1012189 988960 866424 953647 TRUE FALSE FALSE 788175.5282 950353.1504 1296901.671 762625.123 1039777.076 789101.2749 758928.6064 763795.3968 941526.3299 714847.584 1.102578432 1.329448643 1.81423523 1.06683598 1.454543737 1.103873459 1.061664925 1.068473076 1.317100807 1 19.44727615 -6.274391244 23.72949532 1.111467138 1.361858102 0.256637004 0.206796186 569.500503 1043394.489 0.072515656 0.0644091 5.32E-07 6.274391244 0.250390964 AAQSPFSIPNSSSGPYGS(ph)QDSVHSSPEDGGGGR ddPTM_HeLa_A486_30min_R1 1 AAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGR 33 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AAQSPFSIPNSSSGPY(0.003)GS(0.992)QDS(0.005)VHSSPEDGGGGR 101.96 9.82E-05 246630000 104250 130650 166660 4889 182600 74641 92151 91237 119310 36981 TRUE FALSE FALSE 96942.61335 120296.8182 231195.2153 11381.83908 159696.6053 65432.55231 69093.84513 70464.32679 129651.8869 27720.71689 3.497117831 4.339599825 8.34016004 0.410589637 5.760911809 2.36042064 2.492498495 2.541937391 4.677075537 1 14.75867695 -5.269662375 24.996755 2.911919677 5.28702335 0.291171727 1.875755777 821.0227753 2495793.19 0.509676533 0.770559013 5.37E-06 5.269662375 2.375103672 AAQSPFSIPNSSSGPYGSQDS(ph)VHSSPEDGGGGR ddPTM_HeLa_A486_30min_R1 1 AAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGR 33 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AAQSPFSIPNSSSGPYGS(0.421)QDS(0.574)VHS(0.004)S(0.001)PEDGGGGR 162.07 2.37E-14 338660000 165000 194510 254090 11880 259890 91181 137920 128210 215280 54405 TRUE FALSE FALSE 153434.3521 179096.3192 352480.4528 27657.24038 227292.1728 79932.01528 103410.9572 99019.3818 233940.6437 40781.63388 3.762339501 4.391592542 8.643117482 0.678178821 5.573395452 1.960000316 2.535723741 2.428038614 5.736421557 1 15.31563196 -5.274081192 24.99667212 2.968018213 5.478274396 0.287022469 1.980015537 1013.229971 2003458.546 0.538973591 0.805526923 5.32E-06 5.274081192 2.510256183 AAQSPFSIPNSSSGPYGSQDSVHS(ph)SPEDGGGGR ddPTM_HeLa_A485_30min_R1 2 AAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGR 33 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AAQSPFSIPNSSSGPYGS(0.002)QDS(0.002)VHS(0.876)S(0.119)PEDGGGGR;AAQSPFSIPNSSSGPYGS(0.007)QDS(0.161)VHS(0.728)S(0.104)PEDGGGGR ; 238.69 1.06E-50 584560000 110910 233588 276616 37488 264095 151062 189508 205695 217360 130310 TRUE FALSE FALSE 135581.5469 260904.0847 378947.7694 39535.87452 237800.7745 158971.3727 149018.0677 155247.9787 260982.1583 97826.11518 1.385944301 2.667018763 3.873687191 0.404144378 2.43085166 1.62504023 1.523295363 1.58697888 2.667816848 1 16.57793203 -5.260429845 24.99982605 1.661689541 2.644696853 0.248906525 0.821255633 134.6229364 3333719.92 0.222152616 0.358392021 5.49E-06 5.260429845 0.983007312 AAS(ph)AIYSGYIFDYDYYRDDFYDR ddPTM_HeLa_A485_30min_R1 2 AASAIYSGYIFDYDYYRDDFYDR 23 1 Q9UKM9;Q5QPM1 Q9UKM9 RALY RNA-binding protein Raly 1 0 AAS(1)AIYSGYIFDYDYYRDDFYDR;AAS(1)AIYSGYIFDYDYYRDDFYDR ; 112.39 7.99E-05 29321000 5437 6978.6 8434.2 6806.6 9525.1 5462.5 8012.7 7871 7079.9 12256.7 TRUE FALSE FALSE 6646.441893 7794.686564 11554.36156 7178.427323 8576.747599 5748.508053 6300.721187 5940.624909 8500.770989 9201.330258 0.722334891 0.847126051 1.255727295 0.780151035 0.932120396 0.624747498 0.684761987 0.645626746 0.923863262 1 13.16762673 -6.234198134 24.07711862 0.747961689 0.916410222 0.115085439 0.173357449 833.3979341 736596.8844 0.057247501 0.057230068 5.83E-07 6.234198134 0.168448533 AAS(ph)ALLLR ddPTM_HeLa_A485_30min_R1 4 AASALLLR 8 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 0 AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR ;;; 145.72 0.00032464 592947000 621420 723690 723450 731490 924500 695390 835840 828530 700790 912690 TRUE FALSE FALSE 759652.7351 808319.2502 991084.2603 771449.4465 832453.5339 731799.5451 657255.9558 625331.7184 841432.125 685173.1798 1.108701796 1.179729846 1.446472643 1.12591892 1.214953472 1.068050482 0.959255229 0.912662283 1.228057592 1 19.38610915 -6.320919594 2.960123907 1.01665871 1.224138824 0.382834566 0.115657117 0.278094484 4.825909738 0.044019323 0.039291609 4.78E-07 6.320919594 0.207480114 AAS(ph)ALLLR ddPTM_HeLa_A486_30min_R1 6 AASALLLR 8 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 0 AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR ;;;;; 135.71 0.0004818 713605000 948899 1214348 914294 445327 1263811 1097199 1238647 1292012 936900 1280950 TRUE FALSE FALSE 882386.0802 1118118.642 1268333.122 1036743.762 1105292.04 961837.7429 928724.4195 997849.072 1018111.246 960191.7824 0.918968581 1.164474288 1.320916452 1.079725718 1.151115913 1.0017142 0.967228044 1.039218509 1.060320724 1 19.87296306 -6.26209591 24.7903404 1.013243183 1.137262187 0.257835163 0.095362762 74.1783535 2800917.828 0.033689503 0.031443197 5.47E-07 6.26209591 0.124019004 AAS(ph)APAKGTPGKGATPAPPGK ddPTM_HeLa_A486_30min_R1 1 AASAPAKGTPGKGATPAPPGK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AAS(0.645)APAKGT(0.355)PGKGATPAPPGK 123.43 8.38E-07 1034100000 1285200 1185200 523880 787130 1378800 1505100 2006100 2081900 871050 2105000 TRUE FALSE FALSE 1195114.117 1091280.436 726740.366 1832478.419 1205858.047 1319416.065 1504152.562 1607896.818 946553.3153 1577894.299 0.757410758 0.691605538 0.460576077 1.161344217 0.764219788 0.836187865 0.953265731 1.019014277 0.599883855 1 20.58956913 -5.250104251 24.99525304 0.898934792 0.642038285 0.370175923 0.160205154 815.8570851 1799054.64 0.042214489 0.072282552 5.62E-06 5.250104251 -0.256896507 AAS(ph)DDGSLK ddPTM_HeLa_A485_30min_R1 1 AASDDGSLK 9 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5;A0A1B0GV45 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 AAS(1)DDGSLK 97.813 0.0019691 0 260730 284670 229750 382970 311590 291820 344700 380130 258730 561990 TRUE FALSE FALSE 318728.489 317959.6802 314744.0857 403890.6814 280567.0055 307099.244 271052.0291 286902.5215 310654.7378 421896.2357 0.755466539 0.753644269 0.746022503 0.957322316 0.665014242 0.727902309 0.642461359 0.680031006 0.736329722 1 18.68652869 -9.875280158 4.336371768 1.000003321 0.740146494 0.476568321 0.081598014 56838108.37 129540763.6 3111.013804 0.021441267 1.33E-10 9.875280158 -0.259856827 AAS(ph)DDGSLK ddPTM_HeLa_A486_30min_R1 1 AASDDGSLK 9 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5;A0A1B0GV45 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 AAS(1)DDGSLK 123.51 0.00069449 0 345120 326620 221810 186470 314980 467060 415730 407330 311730 528180 TRUE FALSE FALSE 320928.8702 300737.4417 307700.7723 434111.5837 275472.2713 409438.8859 311709.9569 314589.851 338751.0074 395920.2901 0.810589602 0.75959088 0.777178589 1.096462077 0.6957771 1.034144741 0.78730483 0.794578754 0.855604059 1 18.59485048 AAS(ph)DSNPAGPLR ddPTM_HeLa_A486_30min_R1 2 AASDSNPAGPLR 12 0 Q9BUU2-2;Q9BUU2 Q9BUU2-2 METTL22 Methyltransferase-like protein 22 1 0 AAS(0.869)DS(0.131)NPAGPLR;AAS(0.989)DS(0.011)NPAGPLR ; 152.16 1.03E-07 605100000 511170 624510 467900 182701 666250 537430 626940 619710 484020 528560 TRUE FALSE FALSE 475339.6227 575021.5532 649083.4108 425337.1612 582682.7125 471127.3508 470072.9809 478615.5612 525975.2433 396205.1357 1.199731099 1.451322816 1.638250877 1.073527632 1.470659161 1.189099556 1.186438384 1.207999387 1.327532624 1 18.59588806 -9.325049426 0.148579519 0.735191671 1.498802058 0.285824948 0.157121258 24.35567539 1.039928777 4.101012039 1.245646719 4.73E-10 9.325049426 0.763610387 AAS(ph)DTERDGLAPEKT(ph)SPDRDK ddPTM_HeLa_A485_30min_R1 1 AASDTERDGLAPEKTSPDRDK 21 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 2 0 AAS(0.997)DT(0.003)ERDGLAPEKT(0.533)S(0.467)PDRDK 88.014 0.0088026 783390000 327970 165040 185360 705230 563410 374890 778410 679480 355350 1130700 TRUE FALSE FALSE 400925.795 184339.9923 253932.3775 743754.9292 507314.9221 394518.6607 612096.3445 512836.4646 426665.4855 848837.299 0.472323489 0.217167639 0.29915318 0.876204345 0.597658612 0.464775359 0.721099727 0.604163442 0.502646957 1 19.69512853 -13.99997072 0.07306028 2.553437746 7.91E-10 0.454395334 0.169426183 287.3746731 1.501236991 74.48340796 8.475453389 1.00E-14 13.99997072 -2.553437745 AAS(ph)EDMTS(ph)DEER ddPTM_HeLa_A485_30min_R1 2 AASEDMTSDEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 2 0 AAS(1)EDMT(0.011)S(0.989)DEER;AAS(1)EDMT(0.253)S(0.747)DEER ; 288.45 1.67E-41 1565390000 1096410 1371790 1274450 1215710 1617180 1359820 1662390 1734350 1272470 1643480 TRUE FALSE FALSE 1340302.622 1532208.908 1745922.089 1282121.159 1456167.881 1431018.073 1307206.796 1308997.943 1527843.057 1233790.682 1.08632902 1.241871032 1.415087757 1.039172347 1.180239 1.159854823 1.059504513 1.060956256 1.238332466 1 20.23466623 -5.291891351 24.9990676 1.111447204 1.247173576 0.296847986 0.100080611 863.6952329 709035.3937 0.028052221 0.041614099 5.11E-06 5.291891351 0.135726373 AAS(ph)EDMTS(ph)DEER ddPTM_HeLa_A486_30min_R1 1 AASEDMTSDEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 2 0 AAS(1)EDMTS(1)DEER 298.75 1.39E-49 466000000 760480 711840 565270 236350 876560 703140 811990 820100 633180 767940 TRUE FALSE FALSE 707174.2791 655431.2059 784157.6825 550234.7445 766613.6712 616393.7358 608821.5136 633381.1327 688064.5522 575642.8255 1.228494906 1.138607443 1.362229576 0.955861378 1.331752325 1.070792006 1.05763763 1.100302313 1.195297712 1 19.1348144 -1.000004432 0.039109259 0.600644488 2.027641086 0.1965797 0.11462411 1300.896525 3.88547092 39.39233527 124.5340241 0.09999898 1.000004432 1.426996598 AAS(ph)EELLEK ddPTM_HeLa_A486_30min_R1 1 AASEELLEK 9 0 F8VY01;Q6ZV73-2;Q6ZV73 F8VY01 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" 1 0 AAS(1)EELLEK 181.68 4.98E-10 0 45264 48381 28995 21602 48951 57561 61676 69316 41730 67922 TRUE FALSE FALSE 42091.22734 44547.11336 40222.64051 50290.5477 42811.10913 50459.70906 46244.01246 53534.25996 45347.19 50913.8891 0.826714048 0.87495012 0.790013123 0.987756948 0.84085325 0.991079447 0.908278925 1.05146672 0.89066443 1 15.63577165 -5.629295947 0.595075895 0.979668906 0.815825725 0.402638612 0.063767633 1.04975598 0.735474947 0.041287278 0.096756374 2.35E-06 5.629295947 -0.163843181 AAS(ph)GWGRDSPDPTPQVSATITVMAAHPEEDHR ddPTM_HeLa_A485_30min_R1 1 AASGWGRDSPDPTPQVSATITVMAAHPEEDHR 32 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 AAS(0.493)GWGRDS(0.493)PDPT(0.015)PQVSATITVMAAHPEEDHR 98.812 0.00010585 84053000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 AAS(ph)KDTISNNR ddPTM_HeLa_A485_30min_R1 1 AASKDTISNNR 11 1 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 AAS(0.987)KDT(0.01)IS(0.003)NNR 107.53 0.0029236 0 46999 38731 33579 67674 60568 48171 78169 86339 50910 103210 TRUE FALSE FALSE 57453.76541 43260.25354 46001.26944 71370.85926 54537.63725 50693.15907 61467.55457 65164.22488 61127.17003 77481.64644 0.741514514 0.558329043 0.593705368 0.921132456 0.703878141 0.65426022 0.79331761 0.84102788 0.788924511 1 16.24156699 -14 0.071015189 2.000253058 0.383533753 0.496043484 0.093930041 259.1670435 1.320274876 41.52356656 5.012984292 1.00E-14 14 -1.616719305 AAS(ph)LGSSQSSR ddPTM_HeLa_A485_30min_R1 1 AASLGSSQSSR 11 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 AAS(0.873)LGS(0.013)S(0.114)QSSR 91.28 0.0026186 183380000 146670 239220 327990 181210 246630 204160 229770 234740 228310 211430 TRUE FALSE FALSE 179296.2355 267194.6981 449327.1498 191109.0435 222074.6512 214849.5019 180677.7625 177169.6469 274129.7228 158724.3921 1.129607322 1.683387755 2.830863889 1.204030716 1.399121133 1.353601038 1.138311258 1.116209327 1.727079998 1 17.27616433 AAS(ph)LGSSQSSR ddPTM_HeLa_A486_30min_R1 2 AASLGSSQSSR 11 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 AAS(0.994)LGS(0.001)S(0.006)QSSR;AAS(0.866)LGS(0.056)S(0.078)QS(0.001)SR ; 109.96 0.00056485 484800000 437350 564440 633170 168843 674740 514770 543850 553630 457740 490570 TRUE FALSE FALSE 406694.0235 519711.7187 878350.3809 393075.0369 590107.8175 451262.9112 407772.9777 427580.5347 497417.2718 367728.0789 1.105964017 1.413304418 2.388586652 1.068928535 1.60473962 1.227164682 1.108898126 1.162762811 1.352676883 1 18.48827982 -6.232375544 1.615846966 1.161074938 1.559368377 0.18762083 0.35098914 0.660998441 3.429452988 0.153023329 0.142198704 5.86E-07 6.232375544 0.39829344 AAS(ph)LMNLENI ddPTM_HeLa_A486_30min_R1 2 AASLMNLENI 10 0 D6RBP0;Q96NL6-3;Q96NL6-2;Q96NL6 D6RBP0 SCLT1 Sodium channel and clathrin linker 1 1 0 AAS(1)LMNLENI;AAS(1)LMNLENI ; 65.842 0.018688 8912100 27704 37298 32338 14838.5 41572 36287 41455 37437 31779 34885 TRUE FALSE FALSE 25762.09266 34342.37064 44860.13964 34544.7779 36357.65212 31810.27888 31082.52053 28913.41234 34533.62931 26149.56894 0.985182307 1.313305421 1.715521191 1.321045788 1.390372905 1.216474312 1.188643706 1.105693651 1.320619448 1 14.67449954 -6.410318364 3.096641094 1.164365964 1.362944361 0.196904185 0.181119944 0.456946273 8.348071438 0.072110578 0.061376827 3.89E-07 6.410318364 0.198578398 AAS(ph)LNYLNQPSAAPLQVSR ddPTM_HeLa_A485_30min_R1 4 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR ;;; 303.7 1.82E-79 6250450000 2122030 2573500 2694700 2289900 3252800 2622680 3285860 3253840 2512840 3145300 TRUE FALSE FALSE 2594068.253 2874448.439 3691581.666 2414991.439 2928939.811 2759999.469 2583809.168 2455830.638 3017143.939 2361234.595 1.098606745 1.21734979 1.563411646 1.022766414 1.240427282 1.16887982 1.094261948 1.040062111 1.277782371 1 21.17110995 AAS(ph)LNYLNQPSAAPLQVSR ddPTM_HeLa_A486_30min_R1 3 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR;AAS(1)LNYLNQPSAAPLQVSR ;; 355.78 7.58E-116 5052580000 1375040 1685490 1453070 571928 1873110 1553380 1600670 1747960 1443760 1664850 TRUE FALSE FALSE 1278656.797 1551925.634 2015737.619 1331477.288 1638167.078 1361739.769 1200165.436 1349987.666 1568906.279 1247960.724 1.024596986 1.243569292 1.615225207 1.06692243 1.312675188 1.091171976 0.961701288 1.08175493 1.257176007 1 20.2511411 -6.305646662 7.803481468 1.075633826 1.261863105 0.215920298 0.16552746 0.47258439 75.57097125 0.059326393 0.052549352 4.95E-07 6.305646662 0.186229278 AAS(ph)LSSIPSGIER ddPTM_HeLa_A485_30min_R1 1 AASLSSIPSGIER 13 0 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 1 0 AAS(0.982)LS(0.016)S(0.002)IPSGIER 153.81 3.86E-08 187090000 156670 142860 131610 155010 144920 161720 192700 172990 170210 326330 TRUE FALSE FALSE 191520.701 159566.2343 180298.0157 163477.8038 130491.256 170187.4091 151528.0708 130563.9313 204369.5857 244981.9367 0.781774786 0.651338774 0.73596453 0.667305541 0.532656643 0.694693705 0.618527524 0.532953299 0.83422308 1 17.90231585 -7.991297356 5.50713049 0.999663469 0.652302851 0.693523933 0.074636489 0.074441346 8.174705747 0.072836783 0.018940232 1.02E-08 7.991297356 -0.347360617 AAS(ph)LSSIPSGIER ddPTM_HeLa_A486_30min_R1 1 AASLSSIPSGIER 13 0 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 1 0 AAS(0.988)LS(0.011)S(0.001)IPSGIER 184.11 3.58E-17 155760000 166620 178550 171940 50571 247990 185630 178490 156410 217970 204350 TRUE FALSE FALSE 154940.7984 164401.0477 238519.7727 117731.8437 216884.7818 162728.8579 133829.9141 120798.8574 236863.8151 153179.4299 1.011498727 1.073257994 1.557126651 0.768587818 1.41588712 1.062341452 0.873680717 0.788610177 1.546316077 1 17.22486305 -6.504691057 24.81405014 1.025032356 1.167813796 0.035614617 0.275141338 2253.928114 3075114.935 0.095171115 0.082313215 3.13E-07 6.504691057 0.142781439 AAS(ph)LTEDR ddPTM_HeLa_A485_30min_R1 1 AASLTEDR 8 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 AAS(0.999)LT(0.001)EDR 145.25 0.00033406 461880000 421100 545370 510230 559920 493000 448540 555560 456900 470570 633800 TRUE FALSE FALSE 514772.2422 609146.2774 698985.3094 590507.0118 443915.189 472024.8608 436860.0675 344844.5586 565009.0827 475805.3242 1.081896767 1.280242667 1.469057352 1.241068525 0.932976506 0.9920546 0.918148758 0.724759773 1.18747953 1 18.86001189 -5.724778506 5.190421693 0.94420862 1.288037964 0.54518877 0.137720106 0.136522541 8.875407837 0.04159929 0.052629696 1.88E-06 5.724778506 0.343829344 AAS(ph)LTEDR ddPTM_HeLa_A486_30min_R1 2 AASLTEDR 8 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 AAS(0.956)LT(0.044)EDR;AAS(0.908)LT(0.092)EDR ; 124.81 0.00041701 72752000 435541 556890 426707 171958 461525 487501 506750 475643 512276 563630 TRUE FALSE FALSE 405011.825 512760.0082 591939.378 400326.9143 403636.231 427358.0832 379955.7901 367349.4721 556680.4961 422493.3794 0.958622892 1.213652174 1.401061903 0.947534172 0.955366997 1.011514272 0.899317738 0.869479831 1.31760762 1 18.68856921 -5.300966904 24.97782331 0.989089169 1.193366526 0.245773014 0.15245626 665.36613 420449.9344 0.042744436 0.063401569 5.00E-06 5.300966904 0.204277357 AAS(ph)LTEDRDR ddPTM_HeLa_A485_30min_R1 3 AASLTEDRDR 10 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 AAS(1)LTEDRDR;AAS(0.994)LT(0.006)EDRDR;AAS(1)LTEDRDR ;; 159.5 3.70E-07 6759720000 2113640 2484360 3378010 2919000 3929790 3225440 3846120 4318780 3081820 3724210 TRUE FALSE FALSE 2583811.926 2774884.291 4627676.47 3078457.579 3538526.309 3394319.051 3024365.042 3259592.433 3700313.006 2795832.986 0.924165334 0.992507172 1.655204904 1.101087795 1.26564295 1.214063597 1.081740239 1.165875233 1.323510032 1 21.41484675 AAS(ph)LTEDRDR ddPTM_HeLa_A486_30min_R1 4 AASLTEDRDR 10 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 AAS(1)LTEDRDR;AAS(1)LTEDRDR;AAS(0.856)LT(0.144)EDRDR;AAS(0.978)LT(0.022)EDRDR ;;; 194.24 1.27E-10 13552240000 5754916 7373793 7017568 2582379 9262040 7447032 8539667 9026270 7895551 8265945 TRUE FALSE FALSE 5351526.107 6789466.788 9734958.267 6011908.818 8100308.578 6528292.908 6402951.993 6971185.363 8579943.718 6196098.57 0.863692862 1.095764813 1.571143221 0.97027327 1.307324034 1.053613469 1.033384463 1.125092715 1.384733251 1 22.56292866 -10.12661904 4.296247216 0.999972051 1.157990067 0.052206879 0.199407203 132710172.8 2.394763294 36692.74797 0.047362585 7.47E-11 10.12661904 0.158018016 AAS(ph)PAKPS(ph)SLDLVPNLPK ddPTM_HeLa_A486_30min_R1 1 AASPAKPSSLDLVPNLPK 18 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 AAS(1)PAKPS(0.541)S(0.459)LDLVPNLPK 92.29 0.00073746 168800000 191700 189260 84063 131040 155790 225970 313360 253800 128720 287570 TRUE FALSE FALSE 178262.8199 174262.3483 116614.4449 305067.7424 136249.3655 198092.1189 234954.0136 196015.2804 139877.5532 215560.6002 0.82697311 0.808414655 0.540982187 1.415229602 0.632069893 0.91896255 1.089967338 0.909327958 0.648901298 1 17.71773398 AAS(ph)PAKPSSLDLVPNLPK ddPTM_HeLa_A485_30min_R1 2 AASPAKPSSLDLVPNLPK 18 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AAS(1)PAKPSSLDLVPNLPK;AAS(1)PAKPSSLDLVPNLPK ; 259.93 3.84E-58 16051000000 3529050 2724180 1808200 5314500 3992600 3654900 6074400 5964000 2992710 7169900 TRUE FALSE FALSE 4314074.997 3042749.154 2477128.425 5604817.678 3595082.725 3846264.912 4776554.817 4501319.649 3593319.446 5382575.882 0.801488932 0.5652961 0.460212448 1.041289115 0.667911202 0.714576997 0.887410586 0.836276115 0.667583611 1 22.35986532 -13.99999994 0.055016148 1.991529633 0.282023841 0.222008589 0.154592438 702.0408649 2.833296524 97.89187624 18.84765814 1.00E-14 13.99999994 -1.709505792 AAS(ph)PAKPSSLDLVPNLPK ddPTM_HeLa_A486_30min_R1 4 AASPAKPSSLDLVPNLPK 18 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AAS(1)PAKPSSLDLVPNLPK;AAS(1)PAKPSSLDLVPNLPK;AAS(1)PAKPSSLDLVPNLPK;AAS(1)PAKPSSLDLVPNLPK ;;; 258.55 4.32E-58 19125582000 6069780 5685920 2795093 3359120 5673330 7184160 9622230 9220200 4527730 9464750 TRUE FALSE FALSE 5644319.766 5235346.991 3877427.865 7820201.121 4961728.05 6297851.382 7214646.28 7120961.736 4920197.282 7094714.995 0.795566809 0.737922101 0.546523415 1.102257261 0.699355514 0.887682083 1.016904313 1.003699478 0.693501752 1 22.7583133 -5.254455082 24.99891215 0.909076775 0.697795919 0.349481167 0.138250486 649.5254302 2324842.324 0.037161632 0.062639048 5.57E-06 5.254455082 -0.211280856 AAS(ph)PESASSTPESLQAR ddPTM_HeLa_A485_30min_R1 2 AASPESASSTPESLQAR 17 0 Q96BT3 Q96BT3 CENPT Centromere protein T 1 0 AAS(0.737)PES(0.263)ASSTPESLQAR;AAS(1)PESASSTPESLQAR ; 245.71 1.32E-42 624960000 200175 194516 198255 213326 279370 238614 242022 271978 189391 278585 TRUE FALSE FALSE 244703.2382 217262.9541 271597.7746 224979.4592 251554.9419 251107.4601 190312.0226 205274.9691 227400.0365 209138.8865 1.170051358 1.038845323 1.298647894 1.075741881 1.202812859 1.200673219 0.909979133 0.981524634 1.0873159 1 17.67410181 -6.751966479 24.99996442 0.993165297 1.162562086 0.533462234 0.077754832 153.8909365 406134.6935 0.029243843 0.022345263 1.77E-07 6.751966479 0.169396789 AAS(ph)PESASSTPESLQAR ddPTM_HeLa_A486_30min_R1 1 AASPESASSTPESLQAR 17 0 Q96BT3 Q96BT3 CENPT Centromere protein T 1 0 AAS(0.999)PES(0.001)ASSTPESLQAR 215.76 4.72E-25 0 286140 294180 163500 133650 292610 300950 356340 316460 263790 403590 TRUE FALSE FALSE 266083.0636 270868.1054 226811.5787 311143.9543 255908.1253 263821.8488 267179.963 244408.9663 286655.5296 302528.4371 0.879530752 0.895347585 0.749719864 1.028478372 0.845897754 0.872056364 0.883156524 0.807887578 0.947532511 1 18.20671123 -7.978383492 7.365352483 0.99995997 0.87217928 0.291277301 0.067058525 0.169653382 37.84287153 0.061585301 0.015939789 1.05E-08 7.978383492 -0.12778069 AAS(ph)PFR ddPTM_HeLa_A485_30min_R1 12 AASPFR 6 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR ;;;;;;;;;;; 129.55 0.0054222 71874400000 3842381 5541387 5270980 4002784 6668647 5322179 5755157 6997064 4683456 5266386 TRUE FALSE FALSE 4697105.397 6189404.006 7220934.846 4221445.954 6004693.09 5600840.063 4525520.692 5281023.083 5623382.66 3953572.891 1.188065966 1.565521663 1.826432709 1.067754679 1.518801665 1.416652789 1.144666057 1.335759635 1.422354618 1 21.91472559 -12.91735039 0.147072162 1.56E-15 1.535446458 0.242922547 0.209970553 133.1834096 1.579496104 40.78367617 1.195423139 1.21E-13 12.91735039 1.535446458 AAS(ph)PFR ddPTM_HeLa_A486_30min_R1 9 AASPFR 6 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR ;;;;;;;; 117.1 0.007217 69244200000 3048482 3908670 3581245 1225254 4273040 3236801 3829210 3709304 2787294 3251061 TRUE FALSE FALSE 2834799.154 3598932.754 4967998.973 2852453.233 3737075.479 2837477.402 2871101.157 2864776.453 3028898.888 2436974.165 1.163245469 1.476803819 2.038593205 1.17048973 1.533489986 1.164344474 1.178141811 1.175546501 1.242893311 1 21.21665953 -6.189235988 1.558696523 1.152041133 1.515427145 0.306012414 0.236611226 0.499437883 2.42377274 0.102545436 0.098386659 6.47E-07 6.189235988 0.363386012 AAS(ph)PHQVTPQADEKMPVLESSSWPASK ddPTM_HeLa_A485_30min_R1 2 AASPHQVTPQADEKMPVLESSSWPASK 27 1 Q96L73-2;Q96L73-3;Q96L73 Q96L73-2 NSD1 "Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific" 1 0 AAS(0.958)PHQVT(0.042)PQADEKMPVLESSSWPASK;AAS(0.995)PHQVT(0.005)PQADEKMPVLESSSWPASK ; 123.53 5.93E-06 289440000 181135 217029 149820 214070 327880 321170 428080 581510 222447 325290 TRUE FALSE FALSE 221427.8558 242408.6536 205244.6525 225764.102 295235.1159 337985.9646 336617.2109 438893.7607 267090.0725 244201.1895 0.90674356 0.992659594 0.840473599 0.924500419 1.20898312 1.384047167 1.378442143 1.797262993 1.093729613 1 17.8977107 -5.918075932 2.630106429 1.382448808 0.911631622 0.472318567 0.203600652 0.216353037 3.0381959 0.066805001 0.076565301 1.21E-06 5.918075932 -0.470817186 AAS(ph)PPASASDLIEQQQK ddPTM_HeLa_A485_30min_R1 6 AASPPASASDLIEQQQK 17 0 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 0 AAS(0.999)PPAS(0.001)ASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK ;;;;; 371.31 1.12E-119 3706160000 714905 651191 593734 1025196 872674 725799 999807 901284 717328 1327490 TRUE FALSE FALSE 873933.1509 727342.1228 813380.9139 1081199.862 785787.5124 763800.7133 786190.0668 680242.6858 861289.1499 996571.1736 0.876940026 0.729844633 0.816179452 1.084919863 0.788491112 0.766428664 0.788895051 0.682583145 0.864252522 1 19.92661332 AAS(ph)PPASASDLIEQQQK ddPTM_HeLa_A486_30min_R1 5 AASPPASASDLIEQQQK 17 0 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 0 AAS(1)PPASASDLIEQQQK;AAS(0.999)PPAS(0.001)ASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK;AAS(1)PPASASDLIEQQQK ;;;; 327.42 2.08E-91 2851730000 694238 774667 496156 284464 811170 799920 945277 898480 695007 917680 TRUE FALSE FALSE 645575.5012 713279.5656 688280.8907 662246.568 709425.4947 701234.0034 708758.6965 693915.7177 755250.7664 687886.9549 0.938490688 1.03691393 1.000572675 0.962725871 1.031311162 1.019402968 1.030341819 1.008764177 1.097928607 1 19.39181197 -5.788490301 24.34892219 1.031087787 0.989542585 0.30331424 0.034293981 223.8892295 201524.3577 0.010303426 0.011686345 1.63E-06 5.788490301 -0.041545202 AAS(ph)PPASASDLIEQQQKR ddPTM_HeLa_A485_30min_R1 1 AASPPASASDLIEQQQKR 18 1 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 0 AAS(1)PPASASDLIEQQQKR 137.43 1.82E-06 1262400000 151980 248770 138770 103720 238560 292450 308220 444690 131970 151730 TRUE FALSE FALSE 185787.4267 277861.4875 190106.7977 109385.961 214808.1288 307762.2298 242366.2791 335629.0803 158455.1685 113906.5034 1.631051969 2.439382118 1.668972289 0.96031357 1.885828486 2.701884622 2.127765069 2.946531324 1.391098522 1 16.79749059 -6.006921464 24.89564159 2.175769363 1.690853565 0.044184161 0.630028277 692.5315484 2490961.245 0.195412936 0.213292625 9.84E-07 6.006921464 -0.484915798 AAS(ph)PPASASDLIEQQQKR ddPTM_HeLa_A486_30min_R1 1 AASPPASASDLIEQQQKR 18 1 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 0 AAS(1)PPASASDLIEQQQKR 159.67 5.13E-10 1035500000 681090 521710 372860 222770 696030 457480 673090 705270 334060 706120 TRUE FALSE FALSE 633349.1082 480367.7996 517241.3775 518619.8182 608727.4272 401040.7689 504675.7628 544695.4169 363016.5898 529302.9559 1.196572022 0.907547925 0.977212335 0.979816592 1.150054842 0.757677176 0.953472406 1.029080625 0.685838962 1 19.01373419 -6.258568693 24.99949864 0.891297536 1.027677106 0.277179929 0.125500562 398.8403894 3473327.829 0.041223678 0.039506061 5.51E-07 6.258568693 0.13637957 AAS(ph)PQDLAGGYTSSLACHR ddPTM_HeLa_A485_30min_R1 3 AASPQDLAGGYTSSLACHR 19 0 P51948;P51948-2;H0YJ92 P51948 MNAT1 CDK-activating kinase assembly factor MAT1 1 0 AAS(1)PQDLAGGYTSSLACHR;AAS(1)PQDLAGGYTSSLACHR;AAS(1)PQDLAGGYTSSLACHR ;; 164.83 1.52E-12 980440000 219287 225511 263404 209121 339615 300017 367933 397989 225917 311992 TRUE FALSE FALSE 268066.6366 251882.5498 360848.1008 220544.7507 305801.7381 315725.4262 289321.1088 300381.5737 271256.4697 234218.1362 1.144516992 1.075418641 1.540649698 0.94162115 1.305627921 1.347997347 1.235263475 1.282486398 1.158136061 1 17.83749327 -8.062922212 4.892918256 1.000049503 1.235164236 0.179297249 0.15271263 0.549898387 36.03041502 0.141137194 0.036804277 8.65E-09 8.062922212 0.235114733 AAS(ph)PQDLAGGYTSSLACHR ddPTM_HeLa_A486_30min_R1 1 AASPQDLAGGYTSSLACHR 19 0 P51948;P51948-2;H0YJ92 P51948 MNAT1 CDK-activating kinase assembly factor MAT1 1 0 AAS(1)PQDLAGGYTSSLACHR 165.96 1.40E-12 486750000 54380 78562 82793 25705 104790 87138 92920 85824 85901 73833 TRUE FALSE FALSE 50568.24282 72336.461 114852.6669 59842.53906 91646.26107 76387.79951 69670.43319 66283.74872 93346.96784 55344.73623 0.913695615 1.307016095 2.075222952 1.081268846 1.655916485 1.380217971 1.258844796 1.197652265 1.686645817 1 15.75615849 -6.532057606 19.75500861 1.304723817 1.429949965 0.025144742 0.33510269 75.97468795 163489.8311 0.126595349 0.098419061 2.94E-07 6.532057606 0.125226148 AAS(ph)PS(ph)PQS(ph)VR ddPTM_HeLa_A485_30min_R1 4 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 AAS(1)PS(1)PQS(1)VR;AAS(1)PS(1)PQS(1)VR;AAS(1)PS(1)PQS(1)VR;AAS(1)PS(1)PQS(1)VR ;;; 95.183 0.0017287 1578100000 1349190 1918800 1821430 1595970 2265870 1914810 2166150 2391640 1772280 2098510 TRUE FALSE FALSE 1649312.661 2143186.969 2495252.753 1683153.8 2040272.027 2015066.491 1703334.357 1805086.54 2127960.34 1575390.077 1.046923352 1.360416699 1.583895182 1.06840447 1.295090058 1.279090506 1.081214349 1.145802913 1.350751392 1 20.58727766 -6.314135179 1.115584058 1.159000924 1.299451802 0.097550295 0.165756811 1.215022604 3.133981091 0.091604023 0.078682301 4.85E-07 6.314135179 0.140450878 AAS(ph)PS(ph)PQS(ph)VR ddPTM_HeLa_A486_30min_R1 4 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 AAS(1)PS(1)PQS(1)VR;AAS(1)PS(1)PQS(1)VR;AAS(1)PS(1)PQS(1)VR;AAS(1)PS(1)PQS(1)VR ;;; 121.56 0.00015919 1565240000 3343940 3942940 3241260 1488460 4405280 3708210 4081220 4201290 3468480 4243850 TRUE FALSE FALSE 3109547.074 3630487.074 4496362.676 3465210.103 3852728.705 3250728.753 3060055.589 3244747.981 3769130.639 3181162.337 0.977487706 1.14124546 1.413433896 1.08929056 1.21110723 1.021868238 0.961930032 1.019988179 1.184828135 1 21.60112256 -6.267692744 24.20309612 1.034235113 1.174536916 0.23326007 0.116209748 488.6762875 1891373.083 0.041556568 0.037599901 5.40E-07 6.267692744 0.140301803 AAS(ph)PS(ph)PQSVR ddPTM_HeLa_A485_30min_R1 2 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(0.999)PS(0.994)PQS(0.007)VR;AAS(1)PS(1)PQSVR ; 154.36 5.06E-06 1008170000 1150080 1773180 1833970 1353170 2006260 1482180 1652690 1849100 1616960 1684770 TRUE FALSE FALSE 1405911.328 1980537.976 2512431.821 1427090.251 1806509.71 1559784.653 1299579.28 1395605.326 1941469.04 1264787.845 1.111578779 1.565905289 1.986445261 1.128323818 1.428310461 1.233238174 1.027507724 1.103430375 1.535015575 1 20.27046398 -5.360635099 24.59141393 1.214997094 1.556241637 0.284925652 0.251491992 47.53264414 11774.7119 0.07143981 0.105962362 4.36E-06 5.360635099 0.341244543 AAS(ph)PS(ph)PQSVR ddPTM_HeLa_A486_30min_R1 4 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR ;;; 158.01 2.59E-06 10084990000 4931140 6094370 5290910 1779550 6934540 5262310 5714640 5897700 5064850 5168730 TRUE FALSE FALSE 4585492.55 5611429.926 7339692.047 4142882.333 6064745.331 4613099.695 4284776.629 4554922.456 5503875.276 3874446.365 1.18352201 1.448317875 1.894384734 1.069283697 1.565319212 1.190647453 1.105906812 1.175631826 1.42055787 1 21.88555874 -6.28448117 21.83290098 1.184985446 1.438581558 0.235236276 0.228349957 248.8168531 235760.2683 0.079704493 0.070379185 5.19E-07 6.28448117 0.253596112 AAS(ph)PS(ph)PQSVRR ddPTM_HeLa_A485_30min_R1 1 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(1)PS(0.99)PQS(0.01)VRR 58.268 0.014823 871390000 583240 1036700 972360 611780 1192100 1038000 1070500 1335100 822720 733040 TRUE FALSE FALSE 712979.7258 1157933.047 1332076.427 645199.9923 1073410.338 1092348.075 841778.9298 1007664.632 987832.3576 550306.6186 1.29560449 2.104159768 2.42060768 1.172437275 1.950567742 1.984980805 1.529654381 1.831096697 1.795058108 1 19.06987615 -11.20666326 0.421557109 2.28E-10 1.822678451 0.304833826 0.35501299 79.48309457 4.577791148 75.38799058 0.209037057 6.21E-12 11.20666326 1.822678451 AAS(ph)PSPQS(ph)VR ddPTM_HeLa_A485_30min_R1 1 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(0.902)PS(0.099)PQS(0.999)VR 103.76 0.0023283 641330000 822410 988250 995750 813660 1254400 979110 1177000 1232000 950890 1108400 TRUE FALSE FALSE 1005352.267 1103817.241 1364119.362 858108.1855 1129507.532 1030374.686 925524.3348 929850.0683 1141724.901 832096.2786 1.208216276 1.326549907 1.639376833 1.031260694 1.357424087 1.238287819 1.112280344 1.117478941 1.372106726 1 19.66639094 -5.941119923 1.015022114 1.164595421 1.353469512 0.168232829 0.166111894 0.98291334 2.182005319 0.081197913 0.102511775 1.15E-06 5.941119923 0.188874091 AAS(ph)PSPQS(ph)VR ddPTM_HeLa_A486_30min_R1 1 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(0.997)PS(0.098)PQS(0.905)VR 84.718 0.0096776 989700000 915770 1214600 1111200 416880 1349000 1107200 1257600 1318900 1056400 1165800 TRUE FALSE FALSE 851579.252 1118350.673 1541486.399 970517.7079 1179795.841 970604.9212 942935.1785 1018615.261 1147969.603 873876.0919 0.974485124 1.279758862 1.763964495 1.11058961 1.350072226 1.11068941 1.079026177 1.165628938 1.313652603 1 19.73706921 -6.263395978 24.64862535 1.140727902 1.310606886 0.133765587 0.203976411 313.325392 3947145.114 0.071619541 0.066396658 5.45E-07 6.263395978 0.169878984 AAS(ph)PSPQS(ph)VRR ddPTM_HeLa_A485_30min_R1 1 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(0.779)PS(0.328)PQS(0.893)VRR 57.794 0.016156 773870000 774290 1465000 1624100 655720 1736600 1426900 1410100 1796800 1237000 991380 TRUE FALSE FALSE 946528.1392 1636319.006 2224922.174 691540.3232 1563698.006 1501610.278 1108820.616 1356131.983 1485254.554 744247.211 1.271792659 2.19862296 2.989493466 0.92918094 2.101046512 2.017622983 1.489855251 1.822152589 1.995646785 1 19.50542238 -11.12753168 0.317120123 8.99E-15 1.944874974 0.187042086 0.534990774 65.42900159 2.967036602 48.28200741 0.507454824 7.46E-12 11.12753168 1.944874974 AAS(ph)PSPQS(ph)VRR ddPTM_HeLa_A486_30min_R1 1 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(0.72)PS(0.459)PQS(0.821)VRR 53.946 0.019748 520700000 495170 585930 599150 171760 771670 433990 493960 585660 477200 440470 TRUE FALSE FALSE 460461.1401 539498.7729 831156.9258 399865.9603 674879.9531 380448.7263 370365.9834 452318.0029 518564.0802 330173.445 1.394603797 1.633985958 2.517334263 1.211078499 2.04401645 1.152269306 1.12173159 1.369940586 1.570580821 1 18.33286457 -6.273899183 24.83146501 1.258452421 1.764747539 0.337327548 0.36216726 868.4498015 1730751.191 0.125712099 0.111637163 5.32E-07 6.273899183 0.506295119 AAS(ph)PSPQSVR ddPTM_HeLa_A485_30min_R1 8 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AAS(0.991)PS(0.009)PQSVR;AAS(0.997)PS(0.003)PQSVR;AAS(0.997)PS(0.003)PQSVR;AAS(0.878)PS(0.122)PQSVR;AAS(0.981)PS(0.019)PQSVR;AAS(0.998)PS(0.002)PQSVR;AAS(0.987)PS(0.013)PQSVR;AAS(0.993)PS(0.007)PQSVR ;;;;;;; 190.66 6.07E-10 25656540000 2574810 3416430 3771410 3004100 4135040 3269830 3721880 3922360 3261770 3817200 TRUE FALSE FALSE 3147567.602 3815951.77 5166611.5 3168206.376 3723340.899 3441033.243 2926669.933 2960395.06 3916377.32 2865642.29 1.098381194 1.331621809 1.802950605 1.105583341 1.299304142 1.200789524 1.021296323 1.033065107 1.3666665 1 21.4504271 -5.928387074 1.507740285 1.118173808 1.382523057 0.20940197 0.204856225 0.61091986 2.864653156 0.082325479 0.097474418 1.18E-06 5.928387074 0.264349249 AAS(ph)PSPQSVR ddPTM_HeLa_A486_30min_R1 8 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AAS(0.93)PS(0.07)PQSVR;AAS(0.999)PS(0.001)PQSVR;AAS(0.999)PS(0.001)PQSVR;AAS(0.999)PS(0.001)PQSVR;AAS(0.923)PS(0.077)PQSVR;AAS(0.816)PS(0.184)PQSVR;AAS(0.963)PS(0.037)PQSVR;AAS(0.955)PS(0.045)PQSVR ;;;;;;; 197.3 1.14E-13 26503500000 3711578 4636292 4188235 1368248 5280802 3995139 4391942 4588801 3737371 3850518 TRUE FALSE FALSE 3451415.549 4268895.337 5810031.757 3185350.491 4618434.572 3502259.37 3293031.658 3544031.185 4061329.327 2886323.23 1.195782757 1.479008065 2.012952568 1.103601446 1.600109968 1.213398185 1.14090883 1.227870513 1.407094426 1 21.46080144 -6.278618114 22.79101942 1.208537099 1.48721812 0.243085194 0.246817494 401.1086424 532147.4578 0.08648083 0.076525278 5.26E-07 6.278618114 0.278681021 AAS(ph)PSPQSVRR ddPTM_HeLa_A485_30min_R1 2 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AAS(0.998)PS(0.002)PQSVRR;AAS(0.999)PS(0.001)PQSVRR ; 81.789 0.0035328 447060000 116294 356910 272580 77300 297490 331260 307230 546050 209311 137742 TRUE FALSE FALSE 142163.1991 398647.5198 373418.685 81522.70327 267870.851 348604.2614 241587.8007 412130.3813 251317.7978 103405.4544 1.37481335 3.855188513 3.611208783 0.788379141 2.590490538 3.371236687 2.336315837 3.985576814 2.430411426 1 16.65795276 -6.012810315 24.95675479 2.814124581 2.483377442 0 1.12272267 3618.219475 7048937.142 0.360712864 0.378040982 9.71E-07 6.012810315 -0.330747139 AAS(ph)PSPQSVRR ddPTM_HeLa_A486_30min_R1 1 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AAS(0.958)PS(0.042)PQSVRR 76.728 0.0054421 158430000 54764 40362 48763 16992 79927 32532 55478 52391 32130 50574 TRUE FALSE FALSE 50925.3264 37163.56812 67645.33952 39558.23473 69901.81037 28518.5326 41596.81761 40462.71299 34915.05427 37909.94122 1.343323803 0.980311943 1.784369412 1.043479189 1.843891289 0.752270557 1.097253551 1.067337793 0.920999958 1 15.2102886 -6.285558532 24.99980753 0.979886073 1.377460513 0.387566768 0.270309541 877.9459153 909998.9417 0.090138821 0.079534206 5.18E-07 6.285558532 0.39757444 AAS(ph)PVLLSSNSQK ddPTM_HeLa_A485_30min_R1 2 AASPVLLSSNSQK 13 0 G3V1Z7;P41970 G3V1Z7 ELK3 ETS domain-containing protein Elk-3 1 0 AAS(1)PVLLSSNSQK;AAS(1)PVLLSSNSQK ; 207.31 2.77E-22 168340000 347650 336810 309420 412500 430460 428220 492590 495970 337260 580070 TRUE FALSE FALSE 424983.5431 376196.9996 423887.334 435033.8305 387601.891 450640.937 387344.1224 374332.5798 404944.9885 435469.2244 0.975920959 0.863888832 0.973403654 0.999000173 0.890078723 1.034839919 0.88948679 0.859607428 0.929904953 1 18.73221124 -9.178454795 6.854507728 0.999999999 0.934079408 0.105360973 0.056638572 5971095.917 1453732.758 0.054791217 0.013697804 6.63E-10 9.178454795 -0.065920591 AAS(ph)PVLLSSNSQK ddPTM_HeLa_A486_30min_R1 4 AASPVLLSSNSQK 13 0 G3V1Z7;P41970 G3V1Z7 ELK3 ETS domain-containing protein Elk-3 1 0 AAS(1)PVLLSSNSQK;AAS(0.99)PVLLS(0.01)SNSQK;AAS(1)PVLLSSNSQK;AAS(1)PVLLSSNSQK ;;; 225.31 1.53E-27 374679000 550023 650920 428738 225561 669282 629248 763813 702820 558796 735522 TRUE FALSE FALSE 511469.228 599338.7286 594756.8356 525117.4072 585334.4108 551617.7795 572698.9086 542803.2285 607232.8872 551342.5038 0.927679663 1.087053373 1.078742944 0.952434111 1.061652978 1.000499283 1.038735277 0.98451185 1.10137144 1 19.0725893 -7.742907118 24.99956941 1.050685845 1.020434891 0.055246497 0.054704031 723.7837426 976374.4479 0.03517225 0.013243346 1.81E-08 7.742907118 -0.030250954 AAS(ph)PYSQRPAS(ph)PTAIR ddPTM_HeLa_A486_30min_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 2 0 AAS(0.984)PY(0.015)S(0.057)QRPAS(0.932)PT(0.012)AIR 92.792 0.00099832 422140000 215510 234500 187940 65932 272020 252900 234370 211610 251550 232900 TRUE FALSE FALSE 200403.8619 215917.366 260715.4012 153493.028 237900.7151 221699.7693 175728.1471 163431.0224 273354.5565 174580.3241 1.147917802 1.2367795 1.493383648 0.879211497 1.362700616 1.269901236 1.006574756 0.936136551 1.565781012 1 17.41353144 -6.730815195 24.9484767 1.121800922 1.233716299 0.051730446 0.218659559 643.3215329 524091.5289 0.081523758 0.063140883 1.86E-07 6.730815195 0.111915377 AAS(ph)SDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A485_30min_R1 2 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 AAS(0.863)S(0.137)DQLRDNS(1)PPPAFKPEPPK;AAS(0.831)S(0.172)DQLRDNS(0.998)PPPAFKPEPPK ; 110.75 0.00049541 698210000 695250 417940 299560 1074930 744400 574260 891570 776080 453870 1364780 TRUE FALSE FALSE 849905.9639 466814.4474 410379.7097 1133650.704 670284.9223 604327.3656 701078.786 585745.1632 544957.5459 1024565.463 0.829528219 0.455621885 0.400540253 1.106469762 0.654213856 0.589837729 0.684269392 0.571701062 0.531891388 1 19.96658074 -10.04513937 4.239241611 1.000030104 0.64514337 0.234633977 0.191170214 56622520094 1.19E+11 25914340.16 0.048271287 9.01E-11 10.04513937 -0.354886734 AAS(ph)SDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A486_30min_R1 1 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 AAS(0.921)S(0.079)DQLRDNS(1)PPPAFKPEPPK 149.29 5.03E-09 616200000 417320 388090 185680 244930 429440 577550 702700 721990 367740 689880 TRUE FALSE FALSE 388068.023 357336.335 257580.2687 570209.4181 375575.6308 506297.7531 526877.0276 557608.6379 399615.9993 517129.5576 0.750427078 0.690999634 0.498096202 1.102643254 0.726269898 0.979053983 1.018849184 1.078276478 0.772757993 1 18.98016624 -5.261637917 24.99999996 0.951500079 0.650956838 0.547337478 0.12810364 13.61176327 1714092.6 0.034957748 0.055803954 5.47E-06 5.261637917 -0.300543241 AAS(ph)YTEEDENHTAK ddPTM_HeLa_A485_30min_R1 1 AASYTEEDENHTAK 14 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 AAS(0.979)YT(0.021)EEDENHTAK 104.2 0.00029363 768410000 493400 367220 318740 522530 453990 408330 489940 464530 425790 875620 TRUE FALSE FALSE 603155.1278 410163.1846 436655.1899 551074.4908 408789.1615 429709.5274 385260.3166 350603.2891 511242.1474 657344.0486 0.917563838 0.623970333 0.664271915 0.838334951 0.621880068 0.653705663 0.586086262 0.533363449 0.777739068 1 19.32628914 -8.014088147 23.94544745 1.000000009 0.675527523 0.441505261 0.109287362 404.249187 687098.4759 0.105743379 0.027302823 9.68E-09 8.014088147 -0.324472486 AAS(ph)YTEEDENHTAK ddPTM_HeLa_A486_30min_R1 1 AASYTEEDENHTAK 14 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 AAS(0.848)Y(0.004)T(0.148)EEDENHT(0.001)AK 51.535 0.036612 957760000 234960 426500 436110 186550 532770 370110 431940 385990 355990 304540 TRUE FALSE FALSE 218490.5173 392702.5867 604983.4714 434297.8277 465945.0187 324449.5912 323864.0434 298108.5031 386847.4998 228281.2018 0.957111298 1.720258101 2.650167717 1.902468641 2.041101129 1.42127161 1.418706582 1.305882836 1.694609529 1 17.80045254 -6.279434552 17.87530176 1.390371704 1.893677995 0.248548051 0.418947022 31.64015328 31427.0784 0.153198503 0.135953226 5.25E-07 6.279434552 0.503306291 AASAPAKES(ph)PR ddPTM_HeLa_A485_30min_R1 10 AASAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR ;;;;;;;;; 202.24 1.41E-13 54450980000 51847770 54855260 45443900 60757090 65111500 59581990 76959290 79881950 50661550 84192900 TRUE FALSE FALSE 63381127.56 61270105.48 62255489.69 64076095.98 58628770.44 62701610.87 60516308.99 60290776.51 60828858.39 63205159.49 1.002784078 0.969384556 0.984974806 1.013779516 0.927594692 0.992033109 0.95745837 0.95389011 0.962403368 1 25.913539 -5.742100682 24.99981759 0.964176009 0.990509147 0.269329206 0.021727181 334.6404527 432599.9863 0.006119749 0.007888143 1.81E-06 5.742100682 0.026333138 AASAPAKES(ph)PR ddPTM_HeLa_A486_30min_R1 10 AASAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR ;;;;;;;;; 162.94 3.32E-08 98772920000 71596490 77045900 52587810 36030586 77833620 76180390 94520950 92830040 61817870 95873620 TRUE FALSE FALSE 66577945.78 70940502.29 72951218.38 83881025.09 68071001.61 66782028.03 70870808.57 71694666.36 67176292.74 71866241.52 0.926414745 0.98711858 1.01509717 1.167182579 0.947190227 0.929254496 0.98614881 0.997612576 0.934740586 1 26.0988109 AASAPAKES(ph)PRK ddPTM_HeLa_A485_30min_R1 5 AASAPAKESPRK 12 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK ;;;; 132.84 1.01E-05 6034430000 4351850 3254014 2244960 6414600 4775320 4494790 6991560 6106120 3620380 8573920 TRUE FALSE FALSE 5319904.019 3634542.631 3075464.125 6765013.355 4299872.374 4730130.254 5497756.09 4608584.496 4346957.058 6436599.535 0.826508468 0.564668131 0.477808835 1.051022876 0.668034783 0.734880309 0.854139839 0.715996773 0.675349932 1 22.61786728 -14 0.214872066 2.300147649 0.693414052 0.217007773 0.151065766 239.5413602 2.393556917 135.0403288 0.311335283 1.00E-14 14 -1.606733597 AASAPAKES(ph)PRK ddPTM_HeLa_A486_30min_R1 4 AASAPAKESPRK 12 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK;AASAPAKES(1)PRK ;;; 131.4 1.18E-05 6386140000 3734890 3268140 1714490 2427150 3396590 4551680 5759350 5357620 2904710 5722370 TRUE FALSE FALSE 3473093.498 3009160.684 2378386.444 5650527.861 2970558.01 3990140 4318299.714 4137806.882 3156492.602 4289451.306 0.809682463 0.701525783 0.554473352 1.317307846 0.692526339 0.93022154 1.006725431 0.964647128 0.73587328 1 22.03236168 -5.186798553 24.99999998 0.939018755 0.689857158 0.331509465 0.169408034 159.0152579 53259.14667 0.044098054 0.076380065 6.50E-06 5.186798553 -0.249161597 AASAPAKGT(ph)PGK ddPTM_HeLa_A485_30min_R1 2 AASAPAKGTPGK 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AAS(0.007)APAKGT(0.993)PGK;AASAPAKGT(1)PGK ; 71.354 0.013586 1487550000 1864220 1178770 681460 2262400 1264200 1618630 2168300 2200900 1085710 2816300 TRUE FALSE FALSE 2278909.308 1316616.898 933560.4119 2385989.183 1138331.809 1703378.964 1705024.992 1661125.824 1303602.038 2114248.24 1.077881615 0.622735246 0.44155667 1.1285284 0.538409723 0.805666492 0.806445033 0.785681545 0.61657946 1 21.01171335 -10.69197866 2.91273895 1.031291378 0.752925755 0.108176634 0.207822091 111164820.4 102345632.1 25606974.54 0.050815181 2.03E-11 10.69197866 -0.278365624 AASAPAKGT(ph)PGK ddPTM_HeLa_A486_30min_R1 2 AASAPAKGTPGK 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AASAPAKGT(1)PGK;AASAPAKGT(1)PGK ; 104.21 0.00073358 1584820000 2071300 1622230 914060 1115650 1433610 2510300 2727300 2326500 1635460 3139700 TRUE FALSE FALSE 1926112.566 1493678.587 1268008.511 2597289.582 1253793.266 2200604.709 2044900.694 1796806.737 1777222.99 2353498.684 0.818403927 0.634663022 0.538775959 1.103586588 0.532735911 0.935035453 0.868876922 0.763461968 0.755140847 1 21.16637562 -13.99999956 0.084764382 1.704904763 0.57308937 0.154685029 0.165899567 436.9566138 2.59479765 57.34869538 4.660332819 1.00E-14 13.99999956 -1.131815392 AASAPAKGT(ph)PGKGATPAPPGK ddPTM_HeLa_A485_30min_R1 1 AASAPAKGTPGKGATPAPPGK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AAS(0.263)APAKGT(0.732)PGKGAT(0.004)PAPPGK 59.046 0.021523 1147200000 421980 401110 231230 489380 603290 579440 794150 963010 333040 632060 TRUE FALSE FALSE 515847.9952 448016.3253 316771.5993 516113.5902 543224.3293 609778.5824 624473.3649 726830.2876 399878.0732 474499.0742 1.087142259 0.944187986 0.667591607 1.087701996 1.14483749 1.285099625 1.316068669 1.531784417 0.84273731 1 18.85604575 -5.607855036 3.031798897 1.227150534 0.901333727 0.271012631 0.201377117 0.291387862 5.392167791 0.061668352 0.084126842 2.47E-06 5.607855036 -0.325816807 AASDPLLS(ph)SVSPAVS(ph)K ddPTM_HeLa_A485_30min_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 2 0 AASDPLLS(0.458)S(0.098)VS(0.444)PAVS(1)K 88.133 0.0024172 47496000 102420 95339 70326 139960 115920 89154 162540 138820 79733 181230 TRUE FALSE FALSE 125202.9757 106488.0667 96342.51391 147605.6604 104378.5978 93821.96558 127812.0012 104774.1773 95734.68175 136052.6963 0.920253542 0.782697217 0.708126458 1.084915363 0.767192423 0.689600193 0.939430123 0.77009997 0.703658835 1 17.05380602 AASDPLLS(ph)SVSPAVSK ddPTM_HeLa_A485_30min_R1 2 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 0 AASDPLLS(0.753)S(0.126)VS(0.121)PAVSK;AASDPLLS(0.365)S(0.365)VS(0.252)PAVS(0.017)K ; 211.9 9.21E-26 598380000 798790 891960 722970 971980 1029100 962310 1125440 1149920 882040 1379910 TRUE FALSE FALSE 976478.0797 996266.963 990426.6883 1025076.806 926639.1906 1012695.064 884980.55 867900.317 1059057.337 1035923.832 0.942615711 0.961718354 0.956080609 0.989529128 0.894505138 0.97757676 0.854291138 0.837803215 1.02233128 1 19.9824865 -5.761954789 24.99986255 0.921459687 0.961973595 0.052138763 0.057356939 33.80197966 1639619.697 0.017215918 0.020724878 1.73E-06 5.761954789 0.040513908 AASDPLLS(ph)SVSPAVSK ddPTM_HeLa_A486_30min_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 0 AASDPLLS(0.447)S(0.253)VS(0.299)PAVSK 216.38 1.20E-33 582110000 936640 969910 659840 382290 958230 971490 1049800 938860 635440 1064500 TRUE FALSE FALSE 870986.3728 893050.7992 915347.7191 889990.4399 838039.8583 851637.4412 787128.9363 725102.0732 690520.4508 797942.2713 1.091540584 1.119192242 1.147135265 1.115356927 1.050251238 1.067292048 0.986448475 0.908714953 0.865376451 1 19.60592485 -6.75020232 1.349265167 0.912733103 1.113368756 0.809730092 0.03874429 0.172304899 0.634190684 0.023921656 0.014072498 1.78E-07 6.75020232 0.200635653 AASDPLLSSVS(ph)PAVS(ph)K ddPTM_HeLa_A486_30min_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 2 0 AASDPLLS(0.001)S(0.001)VS(0.998)PAVS(1)K 170.16 7.76E-12 49364000 121410 140720 65381 64231 107630 123500 172750 157010 90525 189580 TRUE FALSE FALSE 112899.786 129568.8347 90698.27416 149533.0141 94130.04179 108263.8257 129526.1228 121262.2505 98371.77989 142107.934 0.794465043 0.911763552 0.638235119 1.052249581 0.662384141 0.761842232 0.911462993 0.85331091 0.692232848 1 17.11662758 -10.0585794 4.821520998 1.000005419 0.812502582 0.180443033 0.122086516 154384335.8 12.15222857 9287.986013 0.02773526 8.74E-11 10.0585794 -0.187502837 AASDPLLSSVS(ph)PAVSK ddPTM_HeLa_A485_30min_R1 2 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 0 AASDPLLS(0.239)S(0.201)VS(0.559)PAVSK;AASDPLLS(0.031)S(0.031)VS(0.937)PAVS(0.001)K ; 191.44 4.20E-18 591590000 872740 987800 796540 1071350 1186240 1078090 1175390 1240960 897620 1324640 TRUE FALSE FALSE 1066878.002 1103314.617 1091213.293 1129875.138 1068133.78 1134537.125 924258.3244 936612.6143 1077764.101 994431.6262 1.072852043 1.109492687 1.097323601 1.136201935 1.074114853 1.140890028 0.929433759 0.941857227 1.083799099 1 19.92351265 -6.756060963 24.99999987 0.983927287 1.10498903 0.626749952 0.04393215 82.38298706 382935.7244 0.016821148 0.012639925 1.75E-07 6.756060963 0.121061743 AASDPLLSSVS(ph)PAVSK ddPTM_HeLa_A486_30min_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 0 AASDPLLS(0.144)S(0.111)VS(0.745)PAVSK 124.09 2.46E-05 538660000 776560 1014800 688310 372350 1005300 1022900 1014100 1063300 798880 1070000 TRUE FALSE FALSE 722127.1542 934383.5522 954842.0656 866849.6175 879205.8999 896704.9981 760361.4539 821209.8017 868127.5616 802065.0355 0.900334913 1.164972304 1.190479604 1.080772231 1.096177817 1.117995372 0.948004738 1.023869344 1.082365548 1 19.6133597 -6.738235143 24.98163168 1.015548985 1.099299956 0.187147211 0.078901147 375.3096337 404057.4662 0.030216794 0.023391477 1.83E-07 6.738235143 0.083750971 AASDS(ph)NPAGPLR ddPTM_HeLa_A485_30min_R1 2 AASDSNPAGPLR 12 0 Q9BUU2-2;Q9BUU2 Q9BUU2-2 METTL22 Methyltransferase-like protein 22 1 0 AAS(0.138)DS(0.862)NPAGPLR;AAS(0.031)DS(0.969)NPAGPLR ; 134.04 1.95E-05 563470000 327900 397420 374330 322170 477810 391980 483620 486320 376420 462970 TRUE FALSE FALSE 400840.2238 443894.8119 512810.2442 339769.3313 430237.5587 412503.4667 380290.6362 367049.2575 451964.0413 347560.0993 1.153297587 1.277174258 1.475457756 0.9775844 1.237879606 1.186855072 1.094172308 1.05607421 1.300391046 1 18.40690294 -5.266193044 24.99989094 1.130577136 1.299496303 0.319892613 0.119868994 495.7361138 2607116.241 0.032852026 0.050533883 5.42E-06 5.266193044 0.168919167 AASDSCKEPVANS(ph)R ddPTM_HeLa_A486_30min_R1 1 AASDSCKEPVANSR 14 1 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 AASDSCKEPVANS(1)R 68.41 0.0027223 0 80797 113440 73612 45067 107570 106420 111820 107320 92981 115490 TRUE FALSE FALSE 75133.54754 104450.6013 102116.5378 104918.2536 94077.56755 93290.9824 83841.45329 82885.57878 101040.6679 86570.55229 0.867888047 1.20653731 1.179575908 1.211939289 1.086715576 1.077629516 0.968475435 0.957433869 1.167148242 1 16.40158874 -6.373399956 2.66989068 1.020835178 1.126881945 0.117834649 0.106777858 0.53101965 7.367613394 0.041743026 0.036013654 4.23E-07 6.373399956 0.106046767 AASEDMTS(ph)DEER ddPTM_HeLa_A485_30min_R1 2 AASEDMTSDEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 AASEDMT(0.061)S(0.939)DEER;AASEDMT(0.198)S(0.802)DEER ; 130.77 2.81E-05 643350000 613260 870550 974860 829810 1405850 1198660 1316780 1842290 1471100 1584890 TRUE FALSE FALSE 749677.5713 972353.2497 1335501.281 875140.4191 1265878.638 1261419.984 1035439.196 1390465.489 1766336.276 1189806.091 0.630083824 0.817236739 1.122452887 0.735531971 1.063936929 1.06018955 0.870258779 1.168648824 1.484558106 1 20.18229504 -3.459756303 0.312277881 1.180707542 9.28E-13 0.412948087 0.178498179 13.08315858 0.7020117 0.190822122 6.438340377 0.000346931 3.459756303 -1.180707542 AASEQQADTSGGDS(ph)PKDESKPPFSYAQLIVQAISSAQDR ddPTM_HeLa_A485_30min_R1 3 AASEQQADTSGGDSPKDESKPPFSYAQLIVQAISSAQDR 39 2 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 AASEQQADT(0.006)S(0.004)GGDS(0.99)PKDESKPPFSYAQLIVQAISSAQDR;AASEQQADT(0.003)S(0.003)GGDS(0.993)PKDES(0.002)KPPFSYAQLIVQAISSAQDR;AASEQQADT(0.003)S(0.002)GGDS(0.994)PKDESKPPFSYAQLIVQAISSAQDR ;; 254.64 3.09E-65 447170000 222417 146354 103046 462770 261520 251718 428600 408230 154082 660990 TRUE FALSE FALSE 271892.8943 163468.8272 141167.0035 488049.9533 235482.1505 264897.5652 337026.1087 308110.9524 185004.8441 496217.3576 0.547931043 0.329429885 0.284486226 0.983540672 0.474554441 0.533833735 0.679190487 0.620919336 0.372830255 1 18.92061268 -14 0.268524365 4.058632055 0.508555751 0.333860291 0.192796502 255.6569773 2.491962013 434.2114993 0.247341305 1.00E-14 14 -3.550076305 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(ph)PFAK ddPTM_HeLa_A485_30min_R1 2 AASGEDSTEEALAAAAAPWEGGPVPGVDRSPFAK 34 1 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK ; 252.15 1.00E-52 507720000 59938 60976 49941 62581 94436 60294 102196 100484 53064 101790 TRUE FALSE FALSE 73271.00132 68106.61278 68416.25412 65999.64157 85033.62026 63450.90061 80360.98974 75840.14145 63713.45807 76415.62631 0.958848404 0.891265518 0.895317587 0.863693 1.112777901 0.830339339 1.051630322 0.992469016 0.833775252 1 16.22158007 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(ph)PFAK ddPTM_HeLa_A486_30min_R1 3 AASGEDSTEEALAAAAAPWEGGPVPGVDRSPFAK 34 1 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK ;; 172.92 5.54E-15 343697000 158850 166704 117182 74105 196776 190319 205386 217245 142971 218833 TRUE FALSE FALSE 147715.4353 153493.7679 162558.0086 172520.1851 172094.5192 166839.3768 153996.2504 167783.0559 155363.8414 164035.7924 0.900507341 0.935733389 0.990991089 1.051722813 1.049127856 1.017091297 0.938796638 1.022844182 0.947133788 1 17.32365112 -4.68229783 2.86930299 1.005540497 0.906268408 0.489189819 0.035318885 0.22767328 3.629205285 0.009986327 0.033997068 2.08E-05 4.68229783 -0.099272089 AASGWGRDS(ph)PDPTPQVSATITVMAAHPEEDHR ddPTM_HeLa_A486_30min_R1 1 AASGWGRDSPDPTPQVSATITVMAAHPEEDHR 32 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 AAS(0.208)GWGRDS(0.763)PDPT(0.03)PQVSATITVMAAHPEEDHR 133.95 9.86E-07 310000000 53846 55565 52109 24185 78850 51566 55583 68293 52454 52887 TRUE FALSE FALSE 50071.67346 51161.82704 72287.00033 56303.90224 68959.89775 45204.3112 41675.5455 52744.17473 57000.75495 39643.75096 1.263040763 1.290539512 1.823414752 1.420246593 1.739489732 1.140263222 1.051251319 1.330453689 1.437824463 1 15.27480585 -6.283068587 24.9463063 1.203817673 1.508021957 0.378178691 0.20192129 941.2795551 1085632.588 0.073233786 0.064643829 5.21E-07 6.283068587 0.304204284 AASIENVLQDS(ph)SPEHCGR ddPTM_HeLa_A485_30min_R1 1 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 0 AASIENVLQDS(0.563)S(0.437)PEHCGR 63.165 0.012126 201360000 49182 61811 55767 55825 74495 48751 77025 74866 58936 79149 TRUE FALSE FALSE 60122.36622 69039.25877 76397.53396 58874.57839 67078.01623 51303.52698 60567.97951 56504.99611 70763.91461 59418.61093 1.011844021 1.161913038 1.285750925 0.990844072 1.128905829 0.863425216 1.019343579 0.950964609 1.190938554 1 15.85862726 -5.29720069 24.84402255 1.016496017 1.15404379 0.251611892 0.104574824 708.4776183 492190.3453 0.029123773 0.043199622 5.04E-06 5.29720069 0.137547773 AASIENVLQDSS(ph)PEHCGR ddPTM_HeLa_A485_30min_R1 3 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 0 AASIENVLQDS(0.14)S(0.86)PEHCGR;AASIENVLQDS(0.087)S(0.913)PEHCGR;AASIENVLQDS(0.078)S(0.922)PEHCGR ;; 156.41 8.65E-09 460590000 341629 394443 405678 365775 447330 380565 447280 431760 395367 578530 TRUE FALSE FALSE 417623.1924 440569.6777 555755.1739 385756.3621 402792.2545 400490.7949 351714.9741 325870.183 474713.5304 434313.1181 0.961571675 1.014405643 1.279618669 0.888198735 0.927423644 0.922124565 0.809818906 0.750311629 1.093021395 1 18.728376 AASIENVLQDSS(ph)PEHCGR ddPTM_HeLa_A486_30min_R1 3 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 0 AASIENVLQDS(0.059)S(0.941)PEHCGR;AASIENVLQDS(0.085)S(0.915)PEHCGR;AASIENVLQDS(0.348)S(0.652)PEHCGR ;; 168.84 2.32E-12 536720000 354722 485898 479625 127990 632055 456715 466075 469643 482739 446182 TRUE FALSE FALSE 329857.8196 447393.6729 665348.6448 297967.1883 552776.7682 400370.1468 349458.1054 362715.5411 524583.2052 334455.123 0.986254349 1.337679234 1.989351034 0.890903346 1.65276813 1.197081818 1.044857983 1.084496891 1.568471131 1 18.35145312 -6.48669538 24.3867392 1.172850896 1.381932627 0.080702167 0.32442562 1147.634071 773479.2718 0.112311945 0.099009895 3.26E-07 6.48669538 0.209081731 AASITSEVFNKFFK ddPTM_HeLa_A485_30min_R1 2 AASITSEVFNKFFK 14 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ; ; 118.13 0.00019929 12663900 5001.2 11288.8 6029.2 2857.6 9607.5 13343.3 13919.7 30823.3 5871.9 6349.7 FALSE FALSE TRUE 6113.699686 12608.92696 8259.651976 3013.703452 8650.943566 14041.93456 10945.64238 23263.83735 7050.33647 4766.836648 1.282548604 2.645135106 1.732732331 0.632222934 1.814818549 2.94575535 2.296206728 4.880351282 1.479038824 1 12.21881647 -6.187176464 5.33680284 2.747699849 1.615705261 0.132996259 1.078152806 0.366547408 19.05220772 0.351170571 0.349748923 6.50E-07 6.187176464 -1.131994587 AASLS(ph)SIPSGIER ddPTM_HeLa_A485_30min_R1 1 AASLSSIPSGIER 13 0 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 1 0 AAS(0.032)LS(0.936)S(0.032)IPSGIER 248.67 1.91E-35 205520000 188230 197200 143610 208000 145950 197040 216830 188850 166650 374310 TRUE FALSE FALSE 230101.1141 220260.8246 196737.3151 219362.5133 131418.7055 207356.7097 170502.4992 142534.2414 200095.1264 281001.4057 0.818861079 0.78384243 0.700129292 0.780645609 0.467679887 0.737920543 0.606767424 0.507236756 0.712078738 1 18.10021782 -4.972351734 1.370919031 0.652739285 0.815940352 0.068660875 0.142404766 1.000303295 3.378451691 0.043067616 0.158681759 1.07E-05 4.972351734 0.163201067 AASLS(ph)SIPSGIER ddPTM_HeLa_A486_30min_R1 1 AASLSSIPSGIER 13 0 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 1 0 AAS(0.313)LS(0.641)S(0.046)IPSGIER 240.18 6.19E-35 185970000 177300 191000 184170 65231 246360 193990 191340 180670 230890 235630 TRUE FALSE FALSE 164872.1856 175864.4644 255485.5562 151861.0646 215459.2316 170057.4861 143464.7082 139535.385 250903.7311 176626.7143 0.933449882 0.995684402 1.446471771 0.859785368 1.219856421 0.962807279 0.812248072 0.790001589 1.420531045 1 17.43034404 -6.339329436 24.99665912 0.972438028 1.092651686 0.03725967 0.221568949 364.30934 116912.0345 0.077227259 0.068108048 4.58E-07 6.339329436 0.120213658 AASLT(ph)EDRDR ddPTM_HeLa_A485_30min_R1 1 AASLTEDRDR 10 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 AAS(0.013)LT(0.987)EDRDR 144.35 1.27E-05 3411600000 1878200 2641000 3190500 2926600 3549000 3031200 3712400 4354800 3190700 3883100 TRUE FALSE FALSE 2295999.11 2949841.976 4370798.718 3086472.747 3195649.099 3189908.945 2919215.412 3286778.472 3831044.223 2915114.633 0.787618807 1.011912857 1.499357407 1.058782633 1.096234454 1.094265354 1.00140673 1.127495445 1.314200196 1 21.47512119 -4.519300834 24.9998575 1.148822714 0.843692198 0.364563554 0.145448369 132.6212395 926647.5336 0.037239381 0.10340171 3.02E-05 4.519300834 -0.305130516 AASLTEDRDR ddPTM_HeLa_A485_30min_R1 2 AASLTEDRDR 10 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 ; ; 148.91 5.39E-06 353740000 104806 175891 200843 88120 189652 152772 163658 188411 149336 132436 FALSE FALSE TRUE 128119.7331 196459.9224 275143.1835 92933.77247 170769.581 160770.9057 128691.1313 142202.9068 179306.3654 99422.1425 1.288643856 1.976017791 2.767423599 0.934739185 1.717621213 1.617053321 1.294391049 1.43029413 1.803485229 1 16.60127957 -5.278447138 24.99518364 1.435504711 2.0072275 0.300566741 0.424684013 1043.04487 1532892.159 0.118927763 0.176912866 5.27E-06 5.278447138 0.571722789 AASLTEDRDR ddPTM_HeLa_A486_30min_R1 2 AASLTEDRDR 10 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 ; ; 93.667 0.0034475 220036000 95323 123839 160318 36639 166851 94691 110779 130847 108167 104537 FALSE FALSE TRUE 88641.34995 114025.5466 222397.4231 85297.44363 145922.9918 83008.98717 83060.9225 101055.9945 117543.0027 78360.25478 1.131202932 1.455145175 2.838140633 1.088529432 1.862206704 1.059325131 1.059987908 1.289633307 1.500033441 1 16.25783447 -6.263821075 24.9912049 1.192285027 1.694860553 0.211793621 0.474788915 356.7261563 3743120.448 0.165007515 0.152478743 5.45E-07 6.263821075 0.502575526 AASPAKPS(ph)SLDLVPNLPK ddPTM_HeLa_A486_30min_R1 1 AASPAKPSSLDLVPNLPK 18 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AAS(0.081)PAKPS(0.785)S(0.134)LDLVPNLPK 116.24 0.00085358 279570000 233540 220290 112990 114890 202210 286720 362560 362900 183900 363880 TRUE FALSE FALSE 217170.052 202833.4181 156742.754 267469.7262 176846.9363 251347.4016 271843.6532 280275.5921 199840.6001 272762.0795 0.796188577 0.743627628 0.574650092 0.980597181 0.64835602 0.921489534 0.996632867 1.02754603 0.732655362 1 18.05728356 -6.375383006 6.758666409 0.943549586 0.752030902 0.361798765 0.124156619 0.279123183 14.75766929 0.042781256 0.037618722 4.21E-07 6.375383006 -0.191518685 AASPPAS(ph)ASDLIEQQQK ddPTM_HeLa_A486_30min_R1 1 AASPPASASDLIEQQQK 17 0 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 0 AAS(0.169)PPAS(0.416)AS(0.416)DLIEQQQK 80.979 0.0032198 1489100000 77885 88403 55572 39472 83707 91932 97817 106100 75045 98608 TRUE FALSE FALSE 72425.6637 81397.62432 77090.96667 91892.8108 73207.68752 80590.36454 73342.152 81943.34615 81549.96102 73915.91497 0.97983856 1.101219194 1.042954913 1.243207377 0.990418471 1.090297868 0.992237626 1.108602203 1.10328014 1 16.17359741 AASPS(ph)PQS(ph)VRR ddPTM_HeLa_A485_30min_R1 1 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AAS(0.399)PS(0.608)PQS(0.993)VRR 42.345 0.033088 764280000 227880 539530 678950 163200 577840 384940 375180 470690 432670 217440 TRUE FALSE FALSE 278571.1198 602623.3402 930121.8585 172115.2028 520308.2207 405094.8632 295019.7281 355252.5395 519502.9003 163236.2097 1.706552243 3.691725882 5.698011858 1.054393526 3.187455906 2.481648306 1.807317927 2.176309657 3.18252244 1 17.31660159 -5.283627708 24.9999249 2.221736561 3.698060303 0.284022198 1.136590016 1050.983311 1184156.37 0.3178352 0.471843229 5.20E-06 5.283627708 1.476323742 AASPYSQRPAS(ph)PTAIR ddPTM_HeLa_A485_30min_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 AASPYSQRPAS(0.984)PT(0.016)AIR 188.09 3.29E-18 348760000 101740 111100 105160 190550 121670 110090 137170 119410 128610 228770 TRUE FALSE FALSE 124371.712 124092.1786 144063.0601 200959.264 109556.1076 115854.1422 107862.5089 90124.51027 154420.8473 171741.8492 0.724178251 0.722550614 0.838834918 1.170124026 0.63791154 0.67458306 0.628050236 0.524767322 0.89914513 1 17.38988211 AASPYSQRPAS(ph)PTAIR ddPTM_HeLa_A486_30min_R1 2 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 AASPYSQRPAS(0.9)PT(0.1)AIR;AASPYSQRPAS(0.994)PT(0.006)AIR ; 163.79 3.20E-12 984310000 261560 272510 276810 106751 349920 307490 304760 281630 293900 321520 TRUE FALSE FALSE 243225.9947 250915.3151 383998.2452 248521.7229 306029.7707 269555.0101 228505.8246 217508.9969 319375.4886 241009.2993 1.009197551 1.041102214 1.593292236 1.03117068 1.269784078 1.118442363 0.948120364 0.902492135 1.325158364 1 17.87872929 -6.524673059 21.47935933 1.035454671 1.194371624 0.114022104 0.189665962 21.29023069 254800.3261 0.071737638 0.056165899 2.99E-07 6.524673059 0.158916953 AASPYSQRPAS(ph)PTAIRR ddPTM_HeLa_A485_30min_R1 3 AASPYSQRPASPTAIRR 17 2 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 AASPYSQRPAS(0.5)PT(0.5)AIRR;AASPYSQRPAS(0.86)PT(0.14)AIRR;AASPYS(0.002)QRPAS(0.933)PT(0.065)AIRR ;; 149.67 2.31E-08 1480670000 534790 737660 594830 519158 658890 747100 835380 907830 633400 860940 TRUE FALSE FALSE 653752.1905 823922.9202 814882.3699 547518.287 593288.5981 786217.0008 656894.2386 685183.2691 760517.5701 646323.5024 1.011493761 1.274784094 1.260796438 0.847127305 0.917943717 1.216445012 1.016355178 1.060124329 1.176682524 1 19.30189693 -5.223876232 24.9951484 1.038120809 1.191600699 0.236976154 0.121851183 845.8061389 562812.5978 0.034004478 0.058895723 5.97E-06 5.223876232 0.153479889 AASPYSQRPAS(ph)PTAIRR ddPTM_HeLa_A486_30min_R1 1 AASPYSQRPASPTAIRR 17 2 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 AASPYSQRPAS(0.999)PT(0.001)AIRR 176.57 4.03E-13 380970000 302510 259450 261750 93348 387680 305130 302790 311350 258160 329820 TRUE FALSE FALSE 281305.6112 238890.2371 363106.6099 217318.8615 339053.5594 267486.1629 227028.7394 240462.4017 280537.5167 247230.9252 1.137825338 0.966263573 1.468694135 0.879011642 1.371404322 1.081928414 0.91828617 0.972622666 1.134718549 1 17.91549969 -6.522540863 24.99997057 1.003551361 1.161844955 0.16478765 0.16802959 22.40064088 1657705.168 0.06025925 0.047225543 3.00E-07 6.522540863 0.158293594 AASPYSQRPASPT(ph)AIR ddPTM_HeLa_A485_30min_R1 1 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 AASPYSQRPAS(0.38)PT(0.62)AIR 203.26 3.75E-25 348890000 101190 107090 101640 164810 110090 97794 122280 111310 121310 197600 TRUE FALSE FALSE 123699.3664 119613.2439 139240.8656 173813.153 99129.05305 102914.3426 96153.87906 84011.04797 145655.8043 148341.9566 0.833879836 0.806334544 0.938647897 1.171705949 0.668246903 0.693764226 0.648190716 0.566333692 0.981892161 1 17.17856718 -5.81568735 24.99990059 0.729178404 0.928339652 0.213181199 0.160746608 126.5078679 58299.61889 0.049753858 0.05641562 1.53E-06 5.81568735 0.199161249 AASQGSDS(ph)PLLPAQR ddPTM_HeLa_A486_30min_R1 1 AASQGSDSPLLPAQR 15 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 AASQGS(0.003)DS(0.997)PLLPAQR 150.59 2.68E-07 0 108230 118550 111810 61523 181420 118710 127000 146820 127340 145710 TRUE FALSE FALSE 100643.6359 109155.6662 155105.8264 143228.6532 158664.6119 104064.7672 95223.25673 113392.2911 138377.9337 109223.2676 0.921448681 0.999381072 1.420080444 1.311338292 1.452663113 0.952771048 0.871822084 1.038169738 1.266927247 1 16.7369207 -6.298362519 24.96339986 1.018691366 1.22475207 0.223826735 0.18128563 945.4433928 639202.8737 0.069738902 0.061505349 5.03E-07 6.298362519 0.206060704 AASS(ph)DQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A485_30min_R1 1 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 AAS(0.452)S(0.548)DQLRDNS(1)PPPAFKPEPPK 133.61 8.27E-07 778330000 996430 651950 544710 1607400 1148300 902890 1413000 1176500 759390 2018300 TRUE FALSE FALSE 1218082.416 728189.8813 746220.8963 1695208.192 1033971.22 950163.9243 1111101.007 887961.5303 911792.6075 1515174.954 0.803921958 0.480597887 0.492498173 1.118820099 0.682410449 0.627098489 0.73331532 0.586045544 0.601773812 1 20.53105296 -10.9457491 2.588992574 1.231921667 0.679418563 0.232127438 0.174195905 81331804.54 41087940.08 113657585 0.044327146 1.13E-11 10.9457491 -0.552503104 AASSDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A485_30min_R1 4 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AASSDQLRDNS(1)PPPAFKPEPPK;AASSDQLRDNS(1)PPPAFKPEPPK;AASSDQLRDNS(1)PPPAFKPEPPK;AASSDQLRDNS(1)PPPAFKPEPPK ;;; 158.83 6.34E-11 5558850000 3502830 2972180 2198810 5084670 5290530 5027650 8090200 8023800 4356300 9047000 TRUE FALSE FALSE 4282022.449 3319750.596 3012241.319 5362432.647 4763786.257 5290889.98 6361662.679 6055950.469 5230569.452 6791749.398 0.630474153 0.48879168 0.443514792 0.789551017 0.701407837 0.779017256 0.93667512 0.891662827 0.770135814 1 22.6953518 -5.768922625 0.991256448 0.887460263 0.514781914 0.713954575 0.092413882 0.298849303 0.630148307 0.043429421 0.067215899 1.70E-06 5.768922625 -0.372678348 AASSDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A486_30min_R1 4 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AASSDQLRDNS(1)PPPAFKPEPPK;AAS(0.001)S(0.001)DQLRDNS(0.999)PPPAFKPEPPK;AASSDQLRDNS(1)PPPAFKPEPPK;AASSDQLRDNS(1)PPPAFKPEPPK ;;; 154.69 3.02E-10 6017090000 3573330 3779830 2164110 2442570 4834500 4661060 6653000 6489400 2682320 5415700 TRUE FALSE FALSE 3322858.02 3480302.505 3002111.349 5686426.401 4228111.93 4086025.807 4988349.032 5011905.283 2914825.657 4059573.47 0.818523927 0.857307432 0.739513984 1.400744793 1.041516298 1.006516039 1.228786489 1.234589131 0.718012786 1 21.95289672 -5.223826639 24.9437157 1.100079483 0.810334273 0.360857333 0.173355638 588.9909335 390601.5545 0.045956768 0.079597379 5.97E-06 5.223826639 -0.28974521 AASSELPADISKPWIPSSPAPSSENGGPAS(ph)PGLPAEAS(ph)GS(ph)GPGSPHLHPPDK ddPTM_HeLa_A485_30min_R1 1 AASSELPADISKPWIPSSPAPSSENGGPASPGLPAEASGSGPGSPHLHPPDK 52 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 3 0 AAS(0.002)S(0.002)ELPADIS(0.006)KPWIPS(0.023)S(0.023)PAPS(0.045)S(0.046)ENGGPAS(0.886)PGLPAEAS(0.698)GS(0.676)GPGS(0.592)PHLHPPDK 40.556 0.010876 229160000 30793 39862 33720 27505 51445 59834 64702 62636 29468 40498 TRUE FALSE FALSE 37642.79662 44523.51415 46194.43121 29007.5285 46322.95517 62966.81572 50877.88913 47274.42279 35381.9573 30402.59391 1.238144243 1.464464324 1.519424012 0.954113606 1.523651413 2.071100114 1.673471983 1.55494702 1.163780874 1 14.8919068 -5.972590027 24.98844328 1.567393013 1.311880686 0.069805231 0.308181185 459.2753449 418698.7454 0.097020986 0.110009324 1.07E-06 5.972590027 -0.255512327 AASSELPADISKPWIPSSPAPSSENGGPAS(ph)PGLPAEAS(ph)GS(ph)GPGSPHLHPPDK ddPTM_HeLa_A486_30min_R1 1 AASSELPADISKPWIPSSPAPSSENGGPASPGLPAEASGSGPGSPHLHPPDK 52 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 3 0 AAS(0.002)S(0.002)ELPADIS(0.002)KPWIPS(0.03)S(0.03)PAPS(0.078)S(0.078)ENGGPAS(0.806)PGLPAEAS(0.658)GS(0.658)GPGS(0.658)PHLHPPDK 41.338 0.010012 110160000 31579 26056 15149 13187 29380 25777 37232 36812 20845 35991 TRUE FALSE FALSE 29365.47517 23991.22767 21015.0985 30700.00243 25694.88644 22596.89582 27916.1598 28430.7112 22651.86138 26978.61934 1.088472127 0.889268178 0.778953817 1.137938234 0.952416657 0.837585331 1.03475124 1.053823802 0.839622706 1 14.7195289 AASSLNLS(ph)NGETESVK ddPTM_HeLa_A485_30min_R1 2 AASSLNLSNGETESVK 16 0 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 AASSLNLS(1)NGETESVK;AASSLNLS(0.998)NGET(0.002)ESVK ; 298.33 8.53E-85 0 266890 231920 178376 309230 295500 275810 390100 432600 254760 491720 TRUE FALSE FALSE 326258.7597 259041.0266 244364.7052 326122.4519 266078.9824 290250.9851 306751.9482 326504.1717 305887.9952 369143.2534 0.883826961 0.701735774 0.66197798 0.883457706 0.720801423 0.786282784 0.830983488 0.884491776 0.82864306 1 18.49382127 -8.097665191 0.461143417 1.007362157 0.755695019 0.472614236 0.070692381 1.079814241 0.558609904 0.095164175 0.044668957 7.99E-09 8.097665191 -0.251667137 AASSLNLS(ph)NGETESVK ddPTM_HeLa_A486_30min_R1 2 AASSLNLSNGETESVK 16 0 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 AASSLNLS(1)NGETESVK;AASSLNLS(0.998)NGET(0.002)ESVK ; 344.03 8.75E-92 402630000 366380 410440 235690 152661 423430 450710 467890 436250 344040 523880 TRUE FALSE FALSE 340698.654 377915.2396 326955.48 355402.5231 370319.4611 395105.9827 350818.9732 336925.3983 373861.6642 392697.0381 0.867586513 0.962358263 0.832589626 0.905029803 0.943015671 1.006134359 0.893357828 0.857977946 0.952035865 1 18.58305719 -5.629285183 5.286831296 0.935517658 0.891072345 0.18425278 0.05132887 0.44600464 19.1265852 0.015739393 0.020444125 2.35E-06 5.629285183 -0.044445313 AASSS(ph)SPGS(ph)PVASSPSR ddPTM_HeLa_A485_30min_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AASS(0.004)S(0.932)S(0.064)PGS(1)PVASSPSR 224.64 5.71E-34 523270000 352350 471000 446880 386440 579730 418090 440350 507850 403810 462580 TRUE FALSE FALSE 430729.0419 526079.3528 612199.5082 407550.2387 522010.0456 439980.5459 346265.6252 383298.9912 484850.963 347267.3192 1.240338547 1.514911781 1.762905619 1.173592262 1.503193698 1.266979418 0.997115496 1.10375774 1.396189438 1 18.40568712 -6.477397828 4.468083245 1.131463969 1.444309302 0.398412209 0.182183322 0.226066846 9.905101351 0.068247484 0.057534367 3.33E-07 6.477397828 0.312845333 AASSS(ph)SPGS(ph)PVASSPSR ddPTM_HeLa_A486_30min_R1 3 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AASS(0.002)S(0.99)S(0.008)PGS(1)PVASSPSR;AAS(0.002)S(0.019)S(0.971)S(0.007)PGS(1)PVASSPSR;AAS(0.015)S(0.151)S(0.833)S(0.003)PGS(0.997)PVASSPSR ;; 220.25 8.41E-34 905680000 1211620 1370200 1208917 420352 1500490 1163914 1246180 1290640 1130869 1250499 TRUE FALSE FALSE 1126691.695 1261620.362 1677042.038 978600.6994 1312284.553 1020322.124 934372.5833 996789.4465 1228893.635 937365.911 1.201976391 1.345920891 1.789100733 1.043990066 1.399970425 1.088499286 0.99680666 1.063394172 1.311007389 1 19.8382528 -5.947408264 1.428753973 1.092130849 1.403385731 0.295420459 0.197136703 0.512630093 2.163277084 0.080088154 0.093946766 1.13E-06 5.947408264 0.311254882 AASSS(ph)SPGSPVASSPSR ddPTM_HeLa_A486_30min_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AASS(0.053)S(0.945)S(0.002)PGSPVASSPSR 183.31 1.24E-17 92767000 97772 119660 130600 42808 176210 132910 153170 174110 111640 140240 TRUE FALSE FALSE 90918.6877 110177.7058 181171.8176 99659.1874 154108.0987 116512.9155 114845.2459 134468.9538 121317.0451 105122.9912 0.864879192 1.048083816 1.723427155 0.948024654 1.465979011 1.108348556 1.092484571 1.279158367 1.154048641 1 16.68171871 -8.024776671 21.07457573 0.999999984 1.200334728 0.053334094 0.238719497 873.9250154 743348.7478 0.223620965 0.057738685 9.45E-09 8.024776671 0.200334745 AASSSSPGS(ph)PVAS(ph)SPSR ddPTM_HeLa_A485_30min_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AASSSS(0.001)PGS(0.999)PVAS(0.884)S(0.115)PSR 102.08 0.00012045 0 52755 73839 75617 59164 81360 59460 71768 75195 61705 87982 TRUE FALSE FALSE 64490.16775 82473.82874 103590.875 62395.97951 73259.51273 62573.23366 56434.18051 56753.30835 74088.62751 66049.70659 0.976388406 1.24866306 1.56837752 0.94468216 1.109157277 0.947365808 0.854419852 0.859251483 1.121710169 1 16.01126453 -5.327525614 24.99887085 0.969997848 1.262897969 0.414123667 0.156737532 179.4524952 67882.11108 0.045163462 0.066988252 4.70E-06 5.327525614 0.29290012 AASSSSPGSPVAS(ph)SPSR ddPTM_HeLa_A486_30min_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AASSSSPGSPVAS(0.5)S(0.5)PS(0.001)R 163.8 7.08E-12 175060000 196200 242080 237770 81022 276170 220080 250430 258150 212660 234830 TRUE FALSE FALSE 182447.3932 222896.6992 329840.9117 188623.3106 241530.1834 192928.7672 187769.7652 199374.8804 231093.54 176027.0395 1.036473679 1.266263977 1.873808209 1.071558728 1.372119784 1.096017792 1.066709784 1.132637809 1.312829783 1 17.42543753 -6.053039344 1.815274991 1.128009327 1.356152854 0.146949874 0.228469287 0.686545241 4.534789664 0.089691021 0.09511403 8.85E-07 6.053039344 0.228143526 AASSSSPGSPVASS(ph)PSR ddPTM_HeLa_A485_30min_R1 5 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AASSSSPGSPVAS(0.024)S(0.976)PSR;AASSSSPGSPVAS(0.018)S(0.982)PSR;AASSSSPGSPVAS(0.027)S(0.972)PS(0.001)R;AASSSSPGSPVAS(0.038)S(0.961)PS(0.001)R;AASSSSPGSPVAS(0.034)S(0.962)PS(0.003)R ;;;; 361.61 4.26E-106 1357080000 848603 1246385 1296137 996076 1580528 1223625 1447659 1599221 1246068 1357136 TRUE FALSE FALSE 1037371.81 1392138.884 1775632.013 1050489.11 1423165.083 1287692.113 1138354.828 1207009.542 1496142.418 1018826.971 1.018202147 1.366413457 1.742819991 1.031077051 1.39686632 1.263896765 1.117319094 1.184705133 1.468495103 1 19.95847763 -6.52254326 24.16772058 1.205534207 1.323360531 0.058266681 0.219399787 26.71480987 1924976.016 0.082927736 0.0650468 3.00E-07 6.52254326 0.117826324 AASSSSPGSPVASS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 AASSSSPGSPVASSPSR 17 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AASSSSPGSPVASS(0.999)PS(0.001)R;AASSSSPGSPVASS(1)PSR;AASSSSPGSPVAS(0.047)S(0.947)PS(0.006)R ;; 463.12 1.99E-216 1207920000 1020520 1210900 1128000 363180 1461170 1116090 1253880 1299180 1022300 1170040 TRUE FALSE FALSE 948986.818 1114943.874 1564791.809 845501.3941 1277896.434 978398.1634 940145.9618 1003385.075 1110913.787 877054.3683 1.082015953 1.271236897 1.784144593 0.964023924 1.457032175 1.115550186 1.071935784 1.144039767 1.266641872 1 19.74230675 -6.292259953 23.60403801 1.125654823 1.316375901 0.166945485 0.214172387 666.4866211 510428.0296 0.074574216 0.065778861 5.10E-07 6.292259953 0.190721078 AASVAAATTS(ph)PTPR ddPTM_HeLa_A485_30min_R1 1 AASVAAATTSPTPR 14 0 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 0 AASVAAAT(0.072)T(0.344)S(0.581)PT(0.002)PR 133.23 1.48E-05 269180000 249490 319630 323940 290970 386890 299620 343060 372340 319870 472770 TRUE FALSE FALSE 304988.1898 357007.9481 443778.8863 306864.9543 348369.8731 315307.6399 269762.4285 281023.0312 384064.975 354917.1397 0.859322235 1.005890976 1.250373219 0.86461013 0.98155269 0.888397895 0.760071572 0.791798986 1.082125747 1 18.43712272 AASVAAATTS(ph)PTPR ddPTM_HeLa_A486_30min_R1 1 AASVAAATTSPTPR 14 0 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 0 AASVAAAT(0.076)T(0.265)S(0.649)PT(0.01)PR 59.634 0.030628 204020000 233490 244570 182010 119100 242890 243950 317580 299650 202110 355500 TRUE FALSE FALSE 217123.5567 225189.3825 252489.1464 277270.819 212424.4713 213853.9293 238118.125 231426.2363 219629.0575 266480.4861 0.8147822 0.845050179 0.947495819 1.040492019 0.797148318 0.802512531 0.893566837 0.868454721 0.824184392 1 18.02367037 -10.10939842 4.809691836 1.000004655 0.873405338 0.226489693 0.071653796 5.42E-06 1.00E-06 0.074266517 0.018011339 7.77E-11 10.10939842 -0.126599317 AAT(ph)PLPSLR ddPTM_HeLa_A485_30min_R1 2 AATPLPSLR 9 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 AAT(1)PLPSLR;AAT(0.996)PLPS(0.004)LR ; 127.76 0.0013084 231370000 493380 580730 505540 446720 685600 554780 640230 655920 461930 632410 TRUE FALSE FALSE 603130.6789 648641.3218 692560.2833 471123.1824 617339.2567 583827.4229 503439.6303 495054.5916 554635.1139 474761.8256 1.270385794 1.36624574 1.458753097 0.992335856 1.300313596 1.229726973 1.060404614 1.042743045 1.168238649 1 18.85684441 -5.897906925 0.403687591 1.023569824 1.407437313 0.442695506 0.11507497 1.642487242 0.496807579 0.116594299 0.265514409 1.27E-06 5.897906925 0.383867488 AAT(ph)PLPSLR ddPTM_HeLa_A486_30min_R1 5 AATPLPSLR 9 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 AAT(0.997)PLPS(0.003)LR;AAT(0.895)PLPS(0.105)LR;AAT(1)PLPSLR;AAT(1)PLPSLR;AAT(0.999)PLPS(0.001)LR ;;;; 139.43 0.0003984 456832000 1965500 2664210 2090320 865051 2813560 2021440 2427910 2232170 1816000 2083680 TRUE FALSE FALSE 1827728.6 2453088.297 2899747.885 2013882.445 2460657.069 1772055.285 1820421.238 1723953.619 1973412.342 1561912.966 1.170185945 1.570566575 1.856536151 1.289369184 1.57541241 1.134541632 1.165507476 1.103744995 1.263458583 1 20.57488263 -6.267626243 24.28683575 1.141938129 1.505704599 0.494139338 0.181247185 297.6322248 1168365.579 0.063205617 0.057185151 5.40E-07 6.267626243 0.36376647 AATAARPPAPPPAPQPPS(ph)PT(ph)PSPPRPTLAR ddPTM_HeLa_A485_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.992)PT(0.6)PS(0.394)PPRPT(0.014)LAR 56.547 0.01777 4362800000 56240 67481 69724 82844 85096 72718 92881 90044 73116 104050 TRUE FALSE FALSE 68750.39397 75372.31594 95517.80906 87369.55795 76623.54345 76525.40204 73036.21558 67960.56782 87789.71054 78112.2499 0.880148684 0.964923121 1.222827523 1.118512884 0.980941447 0.979685032 0.935016155 0.870037259 1.123891716 1 16.2532612 -5.907644628 9.736274968 0.971754797 1.05327713 0.081634153 0.103192706 0.751765936 72.72165644 0.033915955 0.038482295 1.24E-06 5.907644628 0.081522333 AATAARPPAPPPAPQPPS(ph)PT(ph)PSPPRPTLAR ddPTM_HeLa_A486_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.823)PT(0.591)PS(0.38)PPRPT(0.207)LAR 70.616 0.0024111 7138200000 94327 136560 99030 27920 124120 106960 135910 138000 94238 131380 TRUE FALSE FALSE 87715.16441 125738.4883 137377.0681 64999.171 108551.7122 93764.36269 101903.8805 106580.4125 102406.6257 98481.59286 0.890675728 1.276771472 1.394951728 0.660013401 1.102253823 0.952100387 1.034750531 1.082236887 1.039855497 1 16.58756648 -5.234797659 24.99981533 0.991040457 1.196396762 0.242370924 0.165983081 1097.376311 1029744.824 0.044358363 0.076802572 5.82E-06 5.234797659 0.205356306 AATAARPPAPPPAPQPPS(ph)PTPS(ph)PPRPTLAR ddPTM_HeLa_A485_30min_R1 3 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.999)PT(0.006)PS(0.995)PPRPTLAR;AAT(0.001)AARPPAPPPAPQPPS(0.982)PT(0.019)PS(0.998)PPRPT(0.001)LAR;AAT(0.003)AARPPAPPPAPQPPS(0.973)PT(0.052)PS(0.972)PPRPT(0.001)LAR ;; 122.89 3.12E-06 10839390000 202373 247037 238932 202629 287825 238232 331453 331387 261696 317525 TRUE FALSE FALSE 247390.1757 275925.8282 327322.8896 213698.1092 259168.1324 250705.4591 260635.3588 250113.8187 314215.9868 238371.8611 1.037832966 1.157543625 1.373160775 0.896490501 1.087242979 1.051740998 1.093398179 1.049258992 1.318175666 1 17.86285442 -5.264398733 24.99784561 1.073773471 1.186315563 0.158792032 0.12491726 510.926678 4315840.379 0.034587791 0.053874206 5.44E-06 5.264398733 0.112542092 AATAARPPAPPPAPQPPS(ph)PTPS(ph)PPRPTLAR ddPTM_HeLa_A486_30min_R1 3 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.998)PT(0.007)PS(0.952)PPRPT(0.043)LAR;AATAARPPAPPPAPQPPS(0.998)PT(0.035)PS(0.965)PPRPT(0.002)LAR;AATAARPPAPPPAPQPPS(0.998)PT(0.007)PS(0.984)PPRPT(0.011)LAR ;; 99.53 0.00024262 41106800000 475084 477028 421010 184866 576260 510540 509290 558880 403236 526640 TRUE FALSE FALSE 441783.0649 439226.564 584036.347 430377.3906 503980.0974 447554.7656 381860.2553 431635.2243 438188.8211 394765.9161 1.119101338 1.112625346 1.479449778 1.090209091 1.276655549 1.133721903 0.967308067 1.093395368 1.109996591 1 18.59063791 -6.522364088 7.214811877 1.050066554 1.21659782 0.348520005 0.111277349 0.15441131 52.70824728 0.041301693 0.033481833 3.00E-07 6.522364088 0.166531265 AATAARPPAPPPAPQPPS(ph)PTPSPPRPTLAR ddPTM_HeLa_A485_30min_R1 2 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.737)PT(0.198)PS(0.066)PPRPTLAR;AATAARPPAPPPAPQPPS(0.44)PT(0.44)PS(0.12)PPRPTLAR ; 278.72 9.26E-78 4402600000 351490 357990 348910 577450 495660 418310 743760 685900 378790 880990 TRUE FALSE FALSE 429677.7379 399853.8164 477986.3284 608994.6313 446310.35 440212.0648 584849.6 517681.9496 454809.6785 661375.4064 0.64967299 0.604579203 0.722715607 0.920800238 0.674821509 0.665600899 0.884292936 0.782735409 0.687672499 1 19.33510987 -14 0.108454664 1.791201171 0.589397729 0.43575297 0.094578927 177.3916313 1.281685045 31.73293243 1.317725449 1.00E-14 14 -1.201803442 AATAARPPAPPPAPQPPS(ph)PTPSPPRPTLAR ddPTM_HeLa_A486_30min_R1 2 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.998)PT(0.002)PSPPRPTLAR;AATAARPPAPPPAPQPPS(0.963)PT(0.03)PS(0.006)PPRPTLAR ; 193.44 2.36E-21 4450900000 524810 539020 462287 236172 543264 479155 682680 680360 495142 753940 TRUE FALSE FALSE 488023.5291 496306.0921 641296.9069 549820.3515 475122.7634 420041.7278 511866.2433 525456.8802 538061.3072 565148.5167 0.86353147 0.878187021 1.134740494 0.972877633 0.840704256 0.743241317 0.905719874 0.929767777 0.952070635 1 19.10827052 -4.549154012 24.99965265 0.928086773 0.86719447 0.063430997 0.096321746 669.9669296 637439.3799 0.027173535 0.071898946 2.82E-05 4.549154012 -0.060892303 AATAARPPAPPPAPQPPSPT(ph)PS(ph)PPRPTLAR ddPTM_HeLa_A486_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.302)PT(0.713)PS(0.968)PPRPT(0.017)LAR 79.395 0.0014495 1906200000 104400 122390 108480 42482 114380 108310 113570 125360 86640 129310 TRUE FALSE FALSE 97082.09912 112691.3707 150486.3612 98900.24292 100033.3938 94947.81342 85153.58478 96818.26459 94150.02496 96929.93433 1.001569843 1.162606489 1.552527217 1.020327143 1.032017555 0.979550993 0.878506577 0.998847933 0.971320424 1 16.56465465 -5.49455982 24.86305613 0.976817254 1.240464333 0.444051424 0.132018259 613.0813294 538264.5221 0.038026988 0.056263384 3.20E-06 5.49455982 0.263647079 AATAARPPAPPPAPQPPSPT(ph)PSPPRPTLAR ddPTM_HeLa_A485_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.016)PT(0.482)PS(0.482)PPRPT(0.02)LAR 114.03 0.0004563 430880000 27059 50374 54080 30795 67792 50815 70738 65053 45031 46041 TRUE FALSE FALSE 33078.1812 56264.8011 74086.44246 32477.25287 61042.39045 53475.59483 55624.24842 49098.64975 54068.30865 34563.82602 0.95701735 1.627852225 2.143467636 0.939631303 1.766077355 1.547154959 1.609319767 1.420521262 1.564303345 1 15.0769753 -10.81318995 2.260679049 0.80224753 1.522942969 0.168799632 0.337037614 12597964.21 7216719.776 13582197.05 0.081630164 1.54E-11 10.81318995 0.720695439 AATAARPPAPPPAPQPPSPT(ph)PSPPRPTLAR ddPTM_HeLa_A486_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.299)PT(0.638)PS(0.062)PPRPTLAR 145.85 2.11E-09 652700000 148610 121020 81632 148980 102890 170980 294730 247450 91772 383600 TRUE FALSE FALSE 138193.2064 111429.9345 113242.0966 346832.969 89984.57679 149886.226 220985.4367 191111.0368 99726.87085 287544.0632 0.480598364 0.387522988 0.393825194 1.20619068 0.31294187 0.521263504 0.76852721 0.664632177 0.346822917 1 18.13342353 -11.3865329 2.150245115 3.891293988 0.573584663 0.208635671 0.253802015 11895910.3 939108.0309 167926636.2 0.063089811 4.11E-12 11.3865329 -3.317709325 AATAARPPAPPPAPQPPSPTPS(ph)PPRPTLAR ddPTM_HeLa_A486_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36;Q96B36-3;H9KV91 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.079)PT(0.398)PS(0.503)PPRPT(0.02)LAR 90.843 0.00050146 615810000 37690 46768 47888 16895 73053 54396 53095 53676 53289 58286 TRUE FALSE FALSE 35048.12563 43061.93335 66431.51609 39332.41383 63890.01155 47685.17458 39810.06942 41455.14654 57908.13343 43690.80622 0.802185372 0.985606288 1.52049188 0.900244633 1.462321643 1.091423544 0.911177267 0.948829974 1.325407756 1 15.41504211 -6.522245734 24.99728319 1.036262552 1.148631865 0.027591515 0.235200039 88.09674042 3479219.269 0.088908609 0.069692601 3.00E-07 6.522245734 0.112369314 AATEALGEKS(ph)PDSATVSGYDIMK ddPTM_HeLa_A485_30min_R1 2 AATEALGEKSPDSATVSGYDIMK 23 1 A0A494BZV2;H0Y2S9;H7C3G6;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AATEALGEKS(0.976)PDS(0.024)ATVSGYDIMK;AATEALGEKS(0.899)PDS(0.101)ATVSGYDIMK ; 245.69 2.68E-49 1102710000 757120 599730 370040 1293540 909020 793010 1340600 1332770 641510 1748460 TRUE FALSE FALSE 925538.732 669863.2065 506933.1946 1364202.815 818514.777 834530.7774 1054169.858 1005906.068 770255.1727 1312601.1 0.705118053 0.510332657 0.386205066 1.039312564 0.623582273 0.635784 0.803115172 0.766345593 0.586815882 1 20.32399712 -14 0.114531697 1.995298839 0.509159969 0.258693333 0.167193892 230.0768278 1.729684866 54.04314254 1.892864833 1.00E-14 14 -1.486138869 AATLAER ddPTM_HeLa_A485_30min_R1 1 AATLAER 7 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1 P50454 SERPINH1 Serpin H1 0 0 108.09 0.022595 28226000 14073 21581 22773 13873 24452 20840 22279 30411 18294 23278 FALSE FALSE TRUE 17203.4903 24104.71022 31197.68036 14630.84686 22017.47302 21931.15018 17518.90965 22952.65457 21965.438 17475.223 0.984450402 1.379364957 1.785252203 0.837233772 1.259925154 1.254985426 1.002499919 1.313439867 1.256947508 1 14.09302325 -5.275561538 24.99787117 1.150247749 1.382656819 0.198607499 0.228923465 1353.818117 2396413.878 0.064618123 0.096366136 5.30E-06 5.275561538 0.23240907 AATS(ph)PGVGQSAPGTR ddPTM_HeLa_A485_30min_R1 2 AATSPGVGQSAPGTR 15 0 Q6IE81;Q6IE81-2 Q6IE81 JADE1 Protein Jade-1 1 0 AAT(0.032)S(0.968)PGVGQSAPGTR;AAT(0.053)S(0.947)PGVGQSAPGTR ; 161.08 7.85E-08 185860000 368290 435310 442240 504900 572940 392250 476940 454970 434660 626080 TRUE FALSE FALSE 450214.8399 486215.7178 605842.9791 532481.4085 515896.0819 412787.6035 375037.8728 343387.8941 521892.2751 470009.7781 0.957883986 1.034480005 1.289000798 1.132915597 1.097628402 0.878253225 0.79793632 0.730597341 1.110385995 1 18.84233125 -6.250439485 6.118186477 0.87946025 1.11151369 0.376997855 0.125797525 0.157750628 26.43298192 0.043882683 0.041910714 5.62E-07 6.250439485 0.23205344 AATS(ph)PGVGQSAPGTR ddPTM_HeLa_A486_30min_R1 2 AATSPGVGQSAPGTR 15 0 Q6IE81;Q6IE81-2 Q6IE81 JADE1 Protein Jade-1 1 0 AAT(0.038)S(0.962)PGVGQSAPGTR;AAT(0.163)S(0.837)PGVGQSAPGTR ; 135.57 9.92E-06 147542000 251360 332280 279260 102843 341500 302280 336250 324230 256500 321910 TRUE FALSE FALSE 233740.962 305948.9227 387396.9508 239423.7014 298665.8856 264987.767 252116.6935 250409.9069 278733.6265 241301.6407 0.968667106 1.26791066 1.605446816 0.992217461 1.237728367 1.098159823 1.044819641 1.037746391 1.155125285 1 17.8804782 -5.978206736 1.374576529 1.065333869 1.253866847 0.157193376 0.167988616 0.758283765 2.962908334 0.071488696 0.082034625 1.05E-06 5.978206736 0.188532978 AATTATPAATT(ph)SPK ddPTM_HeLa_A485_30min_R1 1 AATTATPAATTSPK 14 0 A0A087X055;Q92766-5;Q92766-3;Q92766;Q92766-2 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 AATTATPAAT(0.005)T(0.753)S(0.242)PK 123.1 0.00015951 209680000 179850 242970 172510 271320 291680 210410 258260 348680 199980 499480 TRUE FALSE FALSE 219857.012 271383.2279 236328.6277 286141.5246 262639.315 221426.7422 203080.6412 263165.6833 240114.1517 374968.8282 0.586334104 0.723748769 0.630262064 0.763107499 0.70042973 0.590520399 0.541593396 0.701833495 0.640357634 1 18.51641114 -10.66850195 2.577872517 1.048123862 0.65547225 0.714501563 0.065763817 16443786 13654592.04 5201922.325 0.017902582 2.15E-11 10.66850195 -0.392651612 AATTATPAATTS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AATTATPAATTSPK 14 0 A0A087X055;Q92766-5;Q92766-3;Q92766;Q92766-2 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 AATTATPAATT(0.201)S(0.799)PK;AATTATPAATT(0.007)S(0.993)PK;AATTATPAAT(0.034)T(0.132)S(0.833)PK ;; 194.16 4.35E-18 168393000 515660 512310 343290 291206 454790 534270 679620 603850 382222 931300 TRUE FALSE FALSE 479514.8969 471712.6898 476221.0816 677942.2847 397745.9975 468357.1995 509571.8877 466366.537 415353.3107 698096.4183 0.686889209 0.675712806 0.682170928 0.971129871 0.569757969 0.670906177 0.729944853 0.668054619 0.594979862 1 19.41306678 -10.31691872 4.016372835 1.000545934 0.697538709 0.443986324 0.102544171 26749146.02 34356246.52 105555.8896 0.024827774 4.82E-11 10.31691872 -0.303007225 AAVAGEDGR ddPTM_HeLa_A485_30min_R1 2 AAVAGEDGR 9 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 135.77 0.0011619 106373000 111097 130223 130979 171566 173154 168121 269220 308560 395780 779470 FALSE FALSE TRUE 135810.1444 145451.4471 179433.5826 180938.2162 155914.1798 176923.5556 211698.9477 232885.1762 475209.4157 585162.4741 0.232089634 0.248565917 0.306638909 0.309210218 0.266445964 0.302349456 0.361778065 0.397983785 0.812098241 1 19.15847773 -7.808980579 1.953955403 1.006992862 0.28690302 0.981375382 0.034012025 0.039237483 0.299627532 0.034687199 0.010017208 1.55E-08 7.808980579 -0.720089842 down AAVEEGIVLGGGCALLR ddPTM_HeLa_A485_30min_R1 2 AAVEEGIVLGGGCALLR 17 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 203.11 3.63E-18 90172000 27430 32998 35654 32699 42314 33926 44225 46294 32827 48248 FALSE FALSE TRUE 33531.70887 36856.82906 48843.89829 34485.26357 38101.06959 35702.3129 34775.96746 34940.32391 39415.07779 36220.66154 0.925761912 1.017563664 1.348509282 0.952088176 1.051915342 0.985689145 0.960114089 0.964651733 1.088193206 1 15.14452528 AAVENLPTFLVELSR ddPTM_HeLa_A485_30min_R1 2 AAVENLPTFLVELSR 15 0 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 0 ; ; 227.56 1.18E-22 30856000 25272 33091 33896 26126 38044 31284 37774 41823 31643 37865 FALSE FALSE TRUE 30893.66921 36960.7046 46435.54093 27553.19723 34256.20578 32921.98187 29703.27631 31565.84367 37993.45985 28425.95235 1.086812108 1.300245077 1.633561485 0.969297242 1.205103187 1.158166363 1.044935133 1.110458615 1.336576498 1 14.79492106 -5.289680492 24.99883262 1.124678118 1.336210326 0.292256508 0.158319409 923.8702169 817801.3776 0.044518597 0.066047177 5.13E-06 5.289680492 0.211532209 AAVENLPTFLVELSR ddPTM_HeLa_A486_30min_R1 3 AAVENLPTFLVELSR 15 0 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 0 ;; ;; 247.14 3.71E-31 36143600 36786 47165 43079.2 16354.5 59466 39942.4 46043.2 46976 43927 43106.6 FALSE FALSE TRUE 34207.49136 43427.47363 59760.61994 38074.10251 52007.21978 35014.71279 34522.70436 36280.59028 47734.62773 32312.42678 1.058648166 1.343986755 1.849462448 1.178311452 1.609511416 1.083629931 1.06840333 1.122806112 1.477283896 1 14.97980149 -6.279444005 24.6675512 1.15297369 1.416195643 0.229295536 0.23583537 1082.930013 1483682.231 0.082956466 0.07331433 5.25E-07 6.279444005 0.263221953 AAVESLGFILFR ddPTM_HeLa_A486_30min_R1 1 AAVESLGFILFR 12 0 A0A087WW66;Q99460-2;Q99460;H7C378 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 180.67 7.35E-09 7668600 6139.7 6513 7565.8 3156.6 8485.9 6059.2 8925.6 7469.2 6528 7273.3 FALSE FALSE TRUE 5709.338735 5996.88616 10495.48038 7348.724326 7421.519294 5311.677509 6692.320475 5768.626211 7093.852296 5452.018339 1.047197273 1.099938736 1.925063293 1.34789061 1.36124254 0.974258922 1.227494124 1.058071682 1.301142413 1 12.4125747 -6.181162603 8.647373068 1.123237827 1.373946625 0.204647714 0.238856044 0.638638156 64.11499677 0.082159661 0.082181158 6.59E-07 6.181162603 0.250708798 AAVGQES(ph)PGGLEAGNAK ddPTM_HeLa_A485_30min_R1 6 AAVGQESPGGLEAGNAK 17 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK ;;;;; 342.31 3.16E-92 5992990000 3967840 3539360 3077010 4869150 4977790 4140660 5662840 5585600 3750660 6630890 TRUE FALSE FALSE 4850472.319 3953257.364 4215324.044 5135139.335 4482183.75 4357458.555 4452927.973 4215722.842 4503383.059 4977931.155 0.974395219 0.794156697 0.846802399 1.031581027 0.900410956 0.875355327 0.89453386 0.846882512 0.904669614 1 22.24711485 -8.042509733 21.75546326 1.000000002 0.893335829 0.19386407 0.063416813 2778.703817 1422074.244 0.062054012 0.016022277 9.07E-09 8.042509733 -0.106664173 AAVGQES(ph)PGGLEAGNAK ddPTM_HeLa_A486_30min_R1 6 AAVGQESPGGLEAGNAK 17 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK ;;;;; 296.53 1.91E-68 6325750000 4935000 5272890 3223450 1832900 4857400 5085030 6364130 5830400 4001480 5907870 TRUE FALSE FALSE 4589081.984 4855046.993 4471656.167 4267083.83 4248139.599 4457690.699 4771757.361 4502945.197 4348331.508 4428500.898 1.036260823 1.096318394 1.009744893 0.963550404 0.959272606 1.00659135 1.077510758 1.016810271 0.981896946 1 22.07838698 -4.857341381 7.149884929 1.00206577 1.065859045 0.367398986 0.033881771 0.239263578 15.14506717 0.009796058 0.020687321 1.39E-05 4.857341381 0.063793275 AAVHLEGK ddPTM_HeLa_A485_30min_R1 1 AAVHLEGK 8 0 P18206;P18206-2 P18206 VCL Vinculin 0 0 77.282 0.025187 21504000 88314 86518 89475 100650 125240 93084 121400 111310 103270 146760 FALSE FALSE TRUE 107959.1446 96635.52749 122575.5259 106148.2546 112770.6659 97957.7343 95461.89825 84011.04797 123995.3418 110175.4329 0.979884006 0.877105948 1.11254862 0.963447584 1.023555459 0.88910687 0.86645358 0.762520698 1.125435485 1 16.74944304 -6.26702341 24.52847563 0.909970259 0.990151501 0.069087396 0.104065207 796.688015 3499529.452 0.035306724 0.032033635 5.41E-07 6.26702341 0.080181242 AAVLS(ph)DS(ph)EDEEK ddPTM_HeLa_A485_30min_R1 2 AAVLSDSEDEEK 12 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 AAVLS(1)DS(1)EDEEK;AAVLS(1)DS(1)EDEEK ; 203.11 8.35E-17 1321410000 2441500 2083080 1370500 4013700 1709810 1896610 2813600 2133080 1534340 4430100 TRUE FALSE FALSE 2984603.252 2326678.086 1877504.981 4232958.268 1539575.313 1995913.567 2212451.375 1609938.785 1842267.964 3325757.6 0.897420561 0.699593406 0.564534523 1.272780153 0.462924692 0.600138016 0.665247333 0.484081818 0.553939338 1 21.66525159 -4.26719119 5.581214111 0.685694677 0.904130389 0.054665783 0.239488883 0.427843312 53.79023055 0.05937716 0.356094767 5.41E-05 4.26719119 0.218435712 AAVLS(ph)DS(ph)EDEEK ddPTM_HeLa_A486_30min_R1 3 AAVLSDSEDEEK 12 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 AAVLS(1)DS(1)EDEEK;AAVLS(1)DS(1)EDEEK;AAVLS(1)DS(1)EDEEK ;; 232.53 1.23E-23 1536250000 3470140 3489450 1565560 2240370 2200170 3688610 4319020 3595400 2680240 6710080 TRUE FALSE FALSE 3226901.106 3212933.274 2171786.759 5215694.582 1924204.163 3233546.801 3238355.514 2776805.907 2912565.361 5029832.293 0.641552425 0.638775428 0.431781148 1.036951985 0.382558314 0.642873681 0.643829719 0.552067295 0.579058146 1 22.26207887 -10.69258767 2.492895472 1.065573261 0.616975935 0.325806671 0.165454088 14600648.85 11340687.2 6023692.327 0.040722686 2.03E-11 10.69258767 -0.448597326 AAVLS(ph)DS(ph)EDEEKASAK ddPTM_HeLa_A486_30min_R1 1 AAVLSDSEDEEKASAK 16 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 AAVLS(1)DS(1)EDEEKASAK 123.43 2.81E-05 193510000 401450 388070 168460 439510 362770 598310 788610 741090 349040 938190 TRUE FALSE FALSE 373310.4281 357317.9199 233692.2235 1023201.492 317268.0039 524496.5954 591291.4369 572359.9849 379295.0682 703261.1174 0.530827624 0.508087126 0.332297944 1.454938239 0.45113827 0.745806333 0.840785055 0.813865534 0.539337465 1 19.42370093 AAVLS(ph)DS(ph)EDEEKASAKK ddPTM_HeLa_A485_30min_R1 1 AAVLSDSEDEEKASAKK 17 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 AAVLS(1)DS(1)EDEEKASAKK 84.499 0.0011089 685830000 67379 81988 57122 140690 115330 101300 168790 184840 72477 188350 TRUE FALSE FALSE 82367.2261 91575.7834 78253.80484 148375.5385 103847.3403 106603.9114 132726.6376 139507.7002 87022.4691 141397.8113 0.582521224 0.647646399 0.5534301 1.049348198 0.734433859 0.753929006 0.938675333 0.98663267 0.615444244 1 17.10940026 -5.240012565 24.90355077 0.860377542 0.599843924 0.481175541 0.130076936 689.6745361 801580.6853 0.03435253 0.059428746 5.75E-06 5.240012565 -0.260533618 AAVLS(ph)DS(ph)EDEEKASAKK ddPTM_HeLa_A486_30min_R1 2 AAVLSDSEDEEKASAKK 17 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 AAVLS(1)DS(1)EDEEKASAKK;AAVLS(1)DS(0.996)EDEEKAS(0.004)AKK ; 109.66 0.0001398 602740000 816960 599990 211070 889950 554030 963330 1611790 1523520 460740 2162500 TRUE FALSE FALSE 759695.3228 552444.6073 292801.9567 2071848.576 484538.3913 844484.139 1208503.094 1176647.754 500677.3142 1620995.924 0.468659613 0.340805673 0.180630902 1.278133118 0.29891401 0.520966232 0.745531235 0.725879527 0.308870187 1 20.62844903 -14 0.103422544 2.25555054 0.291683259 0.162793661 0.303069642 349.0174599 2.432962657 96.96041332 4.638593104 1.00E-14 14 -1.963867281 AAVPS(ph)GASTGIYEALELR ddPTM_HeLa_A485_30min_R1 1 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPS(0.999)GASTGIYEALELR 65.704 0.011264 61676000 7510.4 12011 8146.3 8566.2 10309 13690 11544 14997 15129 14082 TRUE FALSE FALSE 9181.062569 13415.58197 11159.95537 9034.149815 9282.599763 14406.78723 9077.530094 11318.96224 18165.25153 10571.61656 0.868463448 1.269018971 1.055652681 0.854566543 0.878068147 1.362779964 0.85867001 1.070693604 1.718304048 1 13.36790838 -7.556881028 24.98874203 1.370935041 1.028253806 0.249104704 0.231494917 238.3979226 175197.8512 0.147233276 0.055649484 2.77E-08 7.556881028 -0.342681234 AAVPS(ph)GASTGIYEALELR ddPTM_HeLa_A486_30min_R1 1 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPS(0.999)GAS(0.001)T(0.001)GIYEALELR 76.151 0.0045021 57345000 13661 15828 11522 6936.2 17210 13323 16504 10324 16256 15217 TRUE FALSE FALSE 12703.43445 14573.73164 15983.62697 16147.82414 15051.36132 11679.34372 12374.52464 7973.450571 17665.08317 11406.56415 1.113695086 1.27766183 1.401265688 1.41566066 1.319535061 1.023914262 1.084859952 0.699022989 1.548676966 1 13.47757667 -6.257867943 23.57238355 1.05333158 1.315446866 0.236912894 0.208605175 190.2760573 1255871.203 0.067772242 0.065151149 5.52E-07 6.257867943 0.262115287 AAVPSGAS(ph)TGIYEALELR ddPTM_HeLa_A485_30min_R1 3 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPS(0.001)GAS(0.974)T(0.025)GIYEALELR;AAVPSGAS(0.972)T(0.028)GIYEALELR;AAVPS(0.002)GAS(0.963)T(0.035)GIYEALELR ;; 149.73 3.44E-08 214308000 50750.8 50706.9 42004.5 50107.6 69684.9 51429.4 67994.4 71781 51347.5 60967.9 TRUE FALSE FALSE 62040.14037 56636.63086 57543.7125 52844.85131 62746.82668 54122.16386 53466.84098 54176.5972 61652.47226 45769.72456 1.355484241 1.237425643 1.25724402 1.154580933 1.37092428 1.182488302 1.168170477 1.183677589 1.347014273 1 15.48210599 -13.02546657 0.295574505 1.92E-27 1.25900069 0.470641943 0.078606149 124.3889268 2.002655594 76.09860485 0.081182781 9.43E-14 13.02546657 1.25900069 AAVPSGAS(ph)TGIYEALELR ddPTM_HeLa_A486_30min_R1 4 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPS(0.005)GAS(0.967)T(0.028)GIYEALELR;AAVPSGAS(0.963)T(0.036)GIYEALELR;AAVPSGAS(0.97)T(0.03)GIYEALELR;AAVPS(0.004)GAS(0.957)T(0.039)GIYEALELR ;;; 295.37 1.24E-78 213060000 55723.5 68299.9 57232.3 30134.8 77060 66976 77930 62190 57133 77488 TRUE FALSE FALSE 51817.57041 62887.56718 79394.17929 70155.33733 67394.41624 58713.18208 58431.08974 48030.6946 62085.33444 58084.50044 0.892106672 1.082691023 1.366873756 1.207815111 1.160282274 1.01082357 1.005966984 0.826910695 1.068879546 1 15.82586562 -6.392295308 2.831318322 0.963241209 1.155563804 0.287941315 0.124613079 0.349989637 5.41854296 0.051383458 0.04396126 4.05E-07 6.392295308 0.192322594 AAVPSGASTGIY(ph)EALELR ddPTM_HeLa_A485_30min_R1 2 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPSGAS(0.013)T(0.308)GIY(0.679)EALELR;AAVPSGAS(0.001)T(0.05)GIY(0.949)EALELR ; 205.61 1.94E-25 181629000 20552.4 26688 21825.4 20516.2 25650.4 23982.9 25306 30478 20618.5 32424 TRUE FALSE FALSE 25124.21048 29808.92945 29899.52369 21636.94806 23096.55611 25238.60756 19899.16637 23003.22271 24756.44383 24341.29352 1.032164148 1.224623885 1.228345719 0.88889886 0.948863136 1.03686386 0.817506529 0.945028772 1.017055392 1 14.57111822 -5.261902314 24.99999976 0.946287995 1.16800252 0.603666819 0.078283297 26.62380581 1437808.158 0.021664742 0.034460244 5.47E-06 5.261902314 0.221714525 AAVPSGASTGIY(ph)EALELR ddPTM_HeLa_A486_30min_R1 3 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPSGAST(0.023)GIY(0.976)EALELR;AAVPSGAS(0.005)T(0.321)GIY(0.675)EALELR;AAVPSGAS(0.013)T(0.145)GIY(0.842)EALELR ;; 182.57 7.69E-18 140041000 38214.9 38909.1 31680.8 24107.9 42689 41716.9 41835.8 41585.8 31251.3 49709 TRUE FALSE FALSE 35536.23285 35825.80121 43948.4542 56124.40955 37334.54756 36570.29302 31368.04035 32117.62115 33960.18785 37261.54285 0.953697301 0.96146854 1.179458789 1.506228815 1.001959251 0.981448706 0.841834179 0.86195092 0.911400475 1 15.18539979 -5.990303571 24.9993235 0.915394169 1.153229727 0.348738928 0.148891374 253.1128891 652570.7886 0.050710265 0.057433112 1.02E-06 5.990303571 0.237835557 AAVPSGASTGIYEALELR ddPTM_HeLa_A485_30min_R1 3 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 0 0 ;; ;; 261.27 1.82E-46 239127000 81347 114918.1 136045.4 84437 142975 114231.9 136775.6 142692 113862.3 133201.6 FALSE FALSE TRUE 99442.35951 128356.7721 186374.2548 89049.5795 128739.907 120212.9056 107552.3757 107696.5633 136713.4192 99996.89251 0.994454498 1.283607609 1.863800465 0.890523468 1.287439077 1.202166414 1.07555718 1.0769991 1.367176677 1 16.60959564 AAVPSGASTGIYEALELR ddPTM_HeLa_A486_30min_R1 3 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;F5H1C3;F5H0C8;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 0 0 ;; ;; 196.58 1.00E-17 177285000 21185.8 30692.3 25411.8 11828.8 39465.4 26005.3 30833.4 32979.8 27309 26879.9 FALSE FALSE TRUE 19700.78482 28260.13037 35251.92951 27538.04419 34515.28153 22797.03049 23118.5572 25471.01948 29676.16611 20148.99808 0.97775506 1.402557599 1.749562404 1.366720275 1.713002373 1.131422535 1.147379989 1.264133302 1.47283582 1 14.29842048 -6.294748761 24.93429841 1.216176753 1.452646428 0.214019592 0.227635844 1052.49905 787862.5451 0.081454258 0.071840223 5.07E-07 6.294748761 0.236469675 AAVPSIK ddPTM_HeLa_A485_30min_R1 1 AAVPSIK 7 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 119.89 0.010572 30897000 92326 85237 93738 100580 142450 111320 126920 119740 101530 152480 FALSE FALSE TRUE 112863.6002 95204.72569 128415.587 106074.4307 128267.1778 117148.5431 99802.50516 90373.57725 121906.1397 114469.5422 0.985970574 0.831703559 1.121831926 0.92666074 1.120535431 1.023403613 0.871869523 0.789498897 1.064965731 1 16.80460425 -6.753266868 24.99915491 0.914041776 1.001411333 0.086705668 0.105479108 376.3901095 1151354.93 0.04035997 0.030712925 1.76E-07 6.753266868 0.087369557 AAVQELSS(ph)SILAGEDPEER ddPTM_HeLa_A485_30min_R1 2 AAVQELSSSILAGEDPEER 19 0 P49768;P49768-2;P49768-7;E7ES96 P49768 PSEN1 Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12;Presenilin 1 0 AAVQELS(0.009)S(0.906)S(0.085)ILAGEDPEER;AAVQELS(0.004)S(0.868)S(0.128)ILAGEDPEER ; 249.06 3.70E-46 244510000 33696 9504.8 18971.1 21734 32448 31344 30834 32799 16572.1 34441 TRUE FALSE FALSE 41191.55895 10616.30368 25989.29934 22921.27339 29217.36319 32985.12337 24246.06401 24754.99382 19897.96846 25855.49254 1.593145398 0.410601487 1.005175179 0.886514668 1.130025396 1.275749179 0.937752935 0.95743656 0.76958381 1 14.65818317 -7.253930236 3.047064909 0.889270797 1.018727278 0.03958967 0.288015571 1.12638576 21.20332431 0.168329069 0.078559413 5.57E-08 7.253930236 0.129456481 AAVS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 AAVSPQK 7 0 E9PJF5;G5E9I4;Q9HCU9 E9PJF5 BRMS1 Breast cancer metastasis-suppressor 1 1 0 AAVS(1)PQK;AAVS(1)PQK ; 74.162 0.012751 177000000 341630 374040 242474 490770 348150 389240 478710 567170 387560 669330 TRUE FALSE FALSE 417624.4149 417780.7243 332175.2228 517579.5224 313486.9636 409620.0045 376429.6978 428070.6682 465339.7371 502478.3491 0.831129173 0.83144025 0.661073703 1.030053381 0.623881535 0.815199312 0.749146104 0.851918633 0.92608913 1 18.93870191 -7.803198538 2.014744658 0.995908766 0.791846345 0.306976422 0.104101947 0.360430557 2.898654872 0.092339737 0.026583239 1.57E-08 7.803198538 -0.204062421 AAVS(ph)PQKR ddPTM_HeLa_A485_30min_R1 4 AAVSPQKR 8 1 E9PJF5;G5E9I4;Q9HCU9 E9PJF5 BRMS1 Breast cancer metastasis-suppressor 1 1 0 AAVS(1)PQKR;AAVS(1)PQKR;AAVS(1)PQKR;AAVS(1)PQKR ;;; 136.96 0.00027353 3481570000 2873830 2980620 1836860 3874500 2482330 3151040 4035090 4929680 2905170 4992470 TRUE FALSE FALSE 3513103.569 3329177.581 2516390.952 4086154.124 2235180.509 3316023.582 3172960.058 3720668.251 3488210.971 3747939.109 0.937342755 0.888268855 0.671406573 1.090240264 0.596375887 0.884759193 0.846587942 0.992723772 0.930701079 1 21.83766608 -7.252544096 20.31120397 0.97128433 0.841384344 0.173525525 0.129265901 84.82939072 193702.9764 0.059276902 0.033314623 5.59E-08 7.252544096 -0.129899986 AAVS(ph)PQKR ddPTM_HeLa_A486_30min_R1 4 AAVSPQKR 8 1 E9PJF5;G5E9I4;Q9HCU9 E9PJF5 BRMS1 Breast cancer metastasis-suppressor 1 1 0 AAVS(1)PQKR;AAVS(1)PQKR;AAVS(1)PQKR;AAVS(1)PQKR ;;; 128.81 0.00033376 2572920000 2128390 1349480 1441290 973690 1437530 2805110 2478770 1974750 2067870 2846150 TRUE FALSE FALSE 1979200.852 1242542.29 1999396.087 2266799.528 1257221.583 2459044.048 1858555.528 1525142.533 2247114.637 2133455.515 0.927697268 0.582408342 0.937163242 1.062501426 0.589288867 1.152610885 0.871148011 0.71486962 1.053274662 1 21.0247606 -1.000000004 0.095819055 1.059531704 0.311439603 0.070207045 0.182237817 415.3307534 2.843904602 2.678091237 40.81846687 0.099999999 1.000000004 -0.748092101 AAVT(ph)PGKK ddPTM_HeLa_A485_30min_R1 2 AAVTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 AAVT(1)PGKK;AAVT(1)PGKK ; 70.389 0.014277 853230000 4060900 824080 366890 5023600 757870 4978000 1283930 1804110 1325980 3370800 TRUE FALSE FALSE 4964233.195 920448.9875 502617.8786 5298026.548 682413.8018 5238640.383 1009607.867 1361649.194 1592092.023 2530521.595 1.961743067 0.363738839 0.198622244 2.093650004 0.269673178 2.07018205 0.398972239 0.538090327 0.629155675 1 21.27100336 AAVTPGK(ac)K ddPTM_HeLa_A485_30min_R1 2 AAVTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; AAVTPGK(1)K;AAVTPGK(1)K 127.02 0.005065 405570000 143041 171574 171106 256220 433370 697240 1239250 1913520 1550150 2373500 FALSE TRUE FALSE 174859.977 191638.0868 234405.2297 270216.6498 390222.1611 733746.4083 974474.1138 1444226.22 1861250.886 1781830.131 0.098135043 0.107551266 0.131553073 0.151651184 0.219000765 0.411793692 0.54689507 0.810529688 1.044572574 1 20.76492837 -6.975952342 0.905102352 1.055248885 0.110777798 0.988131438 0.039001885 0.056648774 0.086533912 0.032905606 0.016221665 1.06E-07 6.975952342 -0.944471087 down AAVTPGK(ac)K ddPTM_HeLa_A486_30min_R1 2 AAVTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; AAVTPGK(1)K;AAVTPGK(1)K 139.88 0.0012754 1153080000 1500140 1816220 1390450 672550 2074430 1901550 2131130 2154560 1621390 2084620 FALSE TRUE FALSE 1394987.933 1672296.113 1928869.478 1565730.389 1814235.646 1666956.095 1597898.733 1664013.722 1761933.391 1562617.583 0.892725096 1.070188977 1.234383574 1.001992046 1.161023443 1.066771622 1.022578237 1.064888645 1.127552518 1 20.57553332 -4.271753457 5.296659983 1.088128374 0.885857799 0.401074001 0.06987501 0.137390036 13.53111387 0.016829957 0.099460614 5.35E-05 4.271753457 -0.202270574 AAVVT(ph)SPPPTTAPHK ddPTM_HeLa_A485_30min_R1 3 AAVVTSPPPTTAPHK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 0 AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK ;; 144.33 1.10E-07 2863790000 1572076 1523301 1568418 1882320 2149819 1596508 2066929 1695668 1731270 2554247 TRUE FALSE FALSE 1921778.883 1701437.801 2148641.086 1985146.375 1935775.472 1680098.69 1625312.734 1279802.764 2078720.009 1917520.23 1.002220916 0.887311526 1.120531117 1.0352675 1.009520234 0.876183032 0.847611779 0.667425952 1.084066794 1 20.87081037 -6.264843214 6.255911536 0.870856923 1.011874242 0.188589255 0.114903527 0.214565122 42.06261711 0.038907084 0.036286285 5.43E-07 6.264843214 0.141017318 AAVVT(ph)SPPPTTAPHK ddPTM_HeLa_A486_30min_R1 5 AAVVTSPPPTTAPHK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 0 AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK;AAVVT(0.5)S(0.5)PPPTTAPHK ;;;; 130.29 2.38E-05 7764650000 3303480 3864670 2807770 1134720 3998130 3495250 3866350 3908190 3165800 3663370 TRUE FALSE FALSE 3071923.111 3558419.474 3895013.739 2641685.506 3496647.254 3064041.592 2898948.336 3018380.452 3440214.093 2746038.307 1.118674529 1.295837522 1.418412019 0.961998781 1.273342489 1.115804388 1.055683866 1.099176382 1.252791734 1 21.38892032 -5.257871639 24.99265054 1.11751667 1.279460962 0.313916606 0.114090971 391.3556005 2741501.786 0.030690579 0.050480306 5.52E-06 5.257871639 0.161944291 AAVVT(ph)SPPPTTAPHKER ddPTM_HeLa_A485_30min_R1 1 AAVVTSPPPTTAPHKER 17 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 0 AAVVT(0.528)S(0.47)PPPT(0.001)T(0.001)APHKER 64.136 0.018246 1537800000 505290 1154500 719100 311160 946900 1155800 1197000 1953900 592810 499940 TRUE FALSE FALSE 617690.0173 1289508.732 985125.0142 328157.8829 852623.3112 1216315.901 941251.1714 1474702.961 711781.5294 375314.1587 1.645794604 3.435811579 2.624801094 0.874355191 2.271758982 3.240794072 2.507902112 3.929249476 1.896495277 1 18.51773919 -6.029829918 23.26425929 2.704057263 2.184313548 0.013399502 0.956550933 929.2103038 724685.9725 0.311626232 0.312246465 9.34E-07 6.029829918 -0.519743715 AAVVTS(ph)PPPTTAPHK ddPTM_HeLa_A485_30min_R1 2 AAVVTSPPPTTAPHK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 0 AAVVT(0.135)S(0.865)PPPTTAPHK;AAVVT(0.194)S(0.806)PPPTTAPHK ; 123.36 2.22E-05 4824900000 2010380 1806620 2005500 2356740 2675700 2008380 2515850 2027030 2169920 3158900 TRUE FALSE FALSE 2457582.095 2017888.493 2747417.906 2485482.739 2409297.913 2113535.671 1978318.095 1529897.714 2605403.04 2371444.365 1.036322897 0.850911168 1.158542003 1.04808815 1.015962233 0.891244046 0.834224966 0.645133294 1.098656616 1 21.17733459 -6.300214881 3.939409169 0.86504877 1.022523973 0.179932951 0.13076256 0.336334077 11.41202785 0.046501983 0.04201509 5.01E-07 6.300214881 0.157475203 AAVVTS(ph)PPPTTAPHKER ddPTM_HeLa_A485_30min_R1 1 AAVVTSPPPTTAPHKER 17 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 0 AAVVT(0.195)S(0.804)PPPTTAPHKER 57.496 0.018531 1636600000 684470 1125700 771940 617300 973610 1163900 1533300 1965500 756480 1139800 TRUE FALSE FALSE 836727.9901 1257340.823 1057512.729 651021.5359 876673.9698 1224840.004 1205697.929 1483458.043 908298.5972 855668.8365 0.977864279 1.469424582 1.2358902 0.760833524 1.024548204 1.431441642 1.40907075 1.733682448 1.061507161 1 19.70669302 -6.26477768 24.85886052 1.378116206 1.103990591 0.155898128 0.25775134 457.2853709 3405189.981 0.090471968 0.083070631 5.44E-07 6.26477768 -0.274125615 AAVVTS(ph)PPPTTAPHKER ddPTM_HeLa_A486_30min_R1 2 AAVVTSPPPTTAPHKER 17 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 P35611 ADD1 Alpha-adducin 1 0 AAVVT(0.038)S(0.962)PPPTTAPHKER;AAVVT(0.086)S(0.914)PPPTTAPHKER ; 101.49 0.00021708 1663380000 2441190 1670020 1361120 674710 2467720 1284440 2023170 2176440 1081800 2396190 TRUE FALSE FALSE 2270075.187 1537681.533 1888182.116 1570758.978 2158195.547 1125978.852 1516951.467 1680912.123 1175571.295 1796168.427 1.263843163 0.856089835 1.051227762 0.874505394 1.201555218 0.626878212 0.844548565 0.935832129 0.654488341 1 20.77649121 -6.259690549 24.99984547 0.810351406 1.029082612 0.356396183 0.158116268 188.7500013 2698226.373 0.050783177 0.048291938 5.50E-07 6.259690549 0.218731206 AAYADLLTPLISKLS(ph)PYPS(ph)SPMR ddPTM_HeLa_A486_30min_R1 1 AAYADLLTPLISKLSPYPSSPMR 23 1 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 2 0 AAYADLLT(0.022)PLIS(0.032)KLS(0.94)PY(0.006)PS(0.538)S(0.462)PMR 83.312 0.0038982 76105000 87889 86914 67008 46096 110130 90044 123970 117820 69532 97041 TRUE FALSE FALSE 81728.43496 80026.6181 92955.29214 107313.8176 96316.46848 78935.28678 92951.39478 90994.95799 75559.08974 72741.30197 1.123549246 1.100153777 1.277888759 1.475280407 1.324096021 1.085150865 1.277835181 1.250939364 1.038737109 1 16.15048713 -7.801838301 4.889793031 1.006561903 1.243269281 0.387089742 0.110908689 0.221375079 11.54256967 0.112700636 0.030850639 1.58E-08 7.801838301 0.236707378 AAYADLLTPLISKLS(ph)PYPSS(ph)PMR ddPTM_HeLa_A485_30min_R1 1 AAYADLLTPLISKLSPYPSSPMR 23 1 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 2 0 AAYADLLT(0.001)PLIS(0.059)KLS(0.936)PY(0.005)PS(0.084)S(0.916)PMR 89.773 0.0023741 69352000 70290 72332 62599 80616 104240 69287 99889 98531 63063 101190 TRUE FALSE FALSE 85925.768 80790.5982 85756.97506 85019.84795 93861.49959 72914.76018 78546.89913 74366.11776 75719.16565 75965.19526 1.131120215 1.063521234 1.128898238 1.119194753 1.235585577 0.959844307 1.033985352 0.978949866 0.996761285 1 16.21305095 -6.281335206 24.996811 0.995097347 1.130365245 0.728054407 0.043254541 464.2252144 583243.4255 0.01544329 0.013638281 5.23E-07 6.281335206 0.135267898 AAYEAELGDAR ddPTM_HeLa_A485_30min_R1 1 AAYEAELGDAR 11 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 126.07 0.0028794 24710000 12067 14517 15880 12277 19258 12353 14798 16348 15935 17942 FALSE FALSE TRUE 14751.26252 16214.63687 21754.67282 12947.66142 17340.6059 12999.78398 11636.28641 12338.62737 19133.00834 13469.3896 1.09516934 1.203813785 1.615119428 0.961265641 1.287408444 0.965135345 0.863905994 0.916049482 1.420480728 1 13.71739685 -5.835861273 1.640190695 1.028213921 1.270673328 0.155243567 0.213622752 0.641838099 3.572859583 0.079685475 0.100701931 1.46E-06 5.835861273 0.242459408 AAYGDLS(ph)S(ph)EEEEENEPESLGVVYK ddPTM_HeLa_A486_30min_R1 1 AAYGDLSSEEEEENEPESLGVVYK 24 0 O15541 O15541 RNF113A RING finger protein 113A 2 0 AAY(0.392)GDLS(0.804)S(0.804)EEEEENEPESLGVVYK 115.54 0.00015381 49113000 97934 109040 61027 47735 112740 126060 128530 124390 80025 136600 TRUE FALSE FALSE 91069.33233 100399.2733 84658.28876 111129.4924 98599.09794 110507.9989 96370.43455 96069.11241 86961.63143 102394.4709 0.889396972 0.980514596 0.826785744 1.085307551 0.96293381 1.07923795 0.941168344 0.938225586 0.849280539 1 16.64377829 -5.248079579 24.99702611 0.978751131 0.907060668 0.198721048 0.073568031 1493.674184 2794752.731 0.020235859 0.034810501 5.65E-06 5.248079579 -0.071690463 AAYLQETGKPLDETLK(ac)K ddPTM_HeLa_A486_30min_R1 1 AAYLQETGKPLDETLKK 17 2 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 0 1 AAYLQETGKPLDETLK(1)K 157.42 9.70E-10 25823000 8698.1 8522.5 7631.3 4298 8050 10939 14620 14106 8174.7 19856 FALSE TRUE FALSE 8088.408107 7847.146062 10586.34373 10005.96121 7040.293937 9589.4574 10961.92137 10894.37173 8883.289578 14883.92836 0.543432346 0.527222778 0.711260057 0.67226615 0.473013157 0.64428269 0.736493827 0.7319554 0.596837701 1 13.86146773 -14 0.172243961 2.47004434 0.544022358 0.672563458 0.080861524 82.5975329 0.78254171 41.40304138 0.297650529 1.00E-14 14 -1.926021982 AAYLQETGKPLDETLKK ddPTM_HeLa_A486_30min_R1 2 AAYLQETGKPLDETLKK 17 2 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 0 0 ; ; 115.34 0.00010311 14539700 35840 36413 19218.3 16484.5 37190 44700 57270 52665 31113 56781 FALSE FALSE TRUE 33327.80108 33527.50127 26660.14044 38376.74908 32525.28342 39185.36848 42940.44026 40674.32917 33809.89989 42562.66802 0.783028946 0.787720856 0.626373808 0.901652807 0.76417398 0.920651132 1.008875671 0.955633917 0.794355746 1 15.37730097 -6.087272633 1.528481273 0.940239707 0.755329647 0.477713282 0.084036031 0.348189957 1.643409904 0.034857041 0.036216853 8.18E-07 6.087272633 -0.18491006 ACANPAAGSVILLENLR ddPTM_HeLa_A485_30min_R1 1 ACANPAAGSVILLENLR 17 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 184.76 2.11E-13 27290000 16901 22093 22891 17889 27534 22124 26373 30158 20027 24505 FALSE FALSE TRUE 20660.56914 24676.58417 31359.33347 18866.23077 24792.61828 23282.37843 20738.1931 22761.70321 24046.2352 18396.35448 1.12307953 1.341384468 1.704649337 1.025541815 1.347691919 1.265597402 1.127299059 1.237294228 1.307119583 1 14.16713228 -5.29781175 24.99930932 1.20456315 1.384873121 0.225436588 0.169808352 930.9284448 639840.0625 0.047441351 0.070369673 5.04E-06 5.29781175 0.180309971 ACGERLS(ph)LGLSR ddPTM_HeLa_A485_30min_R1 3 ACGERLSLGLSR 12 1 Q9NR12-2;Q9NR12;D6RAN1;H0Y8W6;D6RF83;H7BYK4;D6RH06;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 ACGERLS(1)LGLSR;ACGERLS(1)LGLSR;ACGERLS(1)LGLSR ;; 137.17 5.51E-06 825130000 1198620 1117380 926410 1522670 1600440 1257350 1840610 2053370 1000560 1781380 TRUE FALSE FALSE 1465248.884 1248047.871 1269127.61 1605849.606 1441094.574 1323182.902 1447348.637 1549777.788 1201363.214 1337314.75 1.095664939 0.933249163 0.949011899 1.200801537 1.07760314 0.989432669 1.082279723 1.158872874 0.898339912 1 20.35090763 ACGERLS(ph)LGLSR ddPTM_HeLa_A486_30min_R1 2 ACGERLSLGLSR 12 1 Q9NR12-2;Q9NR12;D6RAN1;H0Y8W6;D6RF83;H7BYK4;D6RH06;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 ACGERLS(1)LGLSR;ACGERLS(1)LGLSR ; 146.1 8.89E-08 744750000 675220 578840 494590 297000 797050 637430 841940 912350 497710 805950 TRUE FALSE FALSE 627890.5648 532970.6103 686108.4936 691431.0095 697076.5568 558790.3675 631277.7069 704627.8215 540851.9035 604134.8741 1.039321833 0.882204675 1.135687614 1.144497759 1.153842605 0.924943074 1.044928432 1.166341907 0.895250261 1 19.20451114 -9.591910071 13.98495495 1.000007657 1.047455898 0.01354398 0.104024247 0 0 0.101338395 0.024578171 2.56E-10 9.591910071 0.047448241 ACGVSRPVIACSVTIK ddPTM_HeLa_A485_30min_R1 1 ACGVSRPVIACSVTIK 16 1 A0A3B3IRU2;B1AHD1;A0A3B3IUA2;P55769 A0A3B3IRU2 NHP2L1 "NHP2-like protein 1;NHP2-like protein 1, N-terminally processed" 0 0 90.754 0.0025858 47809000 18012 23264 26892 20048 43529 18538 25573 24835 23695 29393 FALSE FALSE TRUE 22018.70726 25984.52243 36840.46987 21143.17148 39195.09992 19508.62101 20109.11964 18744.17731 28450.36916 22065.86604 0.997862818 1.177589059 1.669568274 0.95818453 1.776277435 0.884108558 0.911322474 0.849464838 1.289338434 1 14.42952875 ACGVSRPVIACSVTIK ddPTM_HeLa_A486_30min_R1 1 ACGVSRPVIACSVTIK 16 1 A0A3B3IRU2;B1AHD1;A0A3B3IUA2;P55769 A0A3B3IRU2 NHP2L1 "NHP2-like protein 1;NHP2-like protein 1, N-terminally processed" 0 0 120.63 2.08E-05 22530000 16765 18024 14132 7458.6 23847 17688 19448 20702 16005 19696 FALSE FALSE TRUE 15589.86007 16595.7126 19604.28887 17363.99774 20855.8869 15505.8344 14581.9047 15988.60652 17392.32629 14763.9934 1.055937892 1.12406665 1.327844597 1.176104409 1.412618275 1.050246636 0.987666704 1.082945927 1.178023169 1 13.84979538 ACKVDS(ph)PTVNTTLR ddPTM_HeLa_A485_30min_R1 1 ACKVDSPTVNTTLR 14 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 ACKVDS(0.942)PT(0.03)VNT(0.011)T(0.017)LR 98.165 0.00040165 394670000 277160 385140 267890 336330 475790 433710 610040 696700 318000 494020 TRUE FALSE FALSE 338813.2858 430178.7727 366993.6588 354702.8563 428418.677 456418.385 479699.9704 525833.2326 381819.6831 370869.9058 0.913563707 1.159918252 0.98954823 0.956407761 1.155172394 1.230669779 1.293445391 1.417837426 1.029524578 1 18.50055368 -5.935646269 4.391795749 1.224080731 1.015671294 0.314444721 0.12895281 0.231385876 8.940478775 0.040239236 0.045503631 1.16E-06 5.935646269 -0.208409437 ACKVDS(ph)PTVNTTLR ddPTM_HeLa_A486_30min_R1 1 ACKVDSPTVNTTLR 14 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 ACKVDS(0.992)PT(0.008)VNTTLR 112.16 0.0001158 480400000 357910 303590 215790 194370 413840 339980 498600 485770 206890 508950 TRUE FALSE FALSE 332822.3572 279532.4227 299349.6671 452503.1829 361932.3283 298036.7243 373845.0063 375170.7753 224823.3918 381505.6073 0.872391784 0.732708556 0.784653387 1.18609838 0.948694649 0.78121191 0.979920083 0.98339518 0.589305603 1 18.54134474 ACKVDS(ph)PTVTTTLK ddPTM_HeLa_A485_30min_R1 3 ACKVDSPTVTTTLK 14 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0 Q07866-4 KLC1 Kinesin light chain 1 1 0 ACKVDS(0.843)PT(0.157)VTTTLK;ACKVDS(0.967)PT(0.033)VTTTLK;ACKVDS(0.929)PT(0.071)VTTTLK ;; 172.6 1.33E-12 3619300000 3941500 4010700 2534730 5068800 5723500 5246000 8215200 10262500 3851700 7376400 TRUE FALSE FALSE 4818273.077 4479716.477 3472432.106 5345695.709 5153648.244 5520672.448 6459955.408 7745605.784 4624700.86 5537599.233 0.870101442 0.808963648 0.627064538 0.965345357 0.930664721 0.996943299 1.166562464 1.398729929 0.83514546 1 22.40082922 -6.00086894 1.307210001 1.122776454 0.784243868 0.406697084 0.153344811 0.393559552 1.395187054 0.065939411 0.074621329 9.98E-07 6.00086894 -0.338532586 ACKVDS(ph)PTVTTTLK ddPTM_HeLa_A486_30min_R1 1 ACKVDSPTVTTTLK 14 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0 Q07866-4 KLC1 Kinesin light chain 1 1 0 ACKVDS(0.539)PT(0.461)VTTTLK 135.95 4.82E-06 1429200000 2385900 1987300 875190 1266100 2130100 2325700 3329200 3395300 1446100 3543600 TRUE FALSE FALSE 2218660.731 1829819.11 1214087.006 2947544.785 1862922.996 2038778.78 2496198.947 2622264.309 1571449.112 2656259.495 0.835257525 0.688870614 0.457066416 1.109659953 0.701333209 0.767537503 0.939742127 0.987201858 0.591602257 1 21.34096466 -5.25406838 24.98942153 0.861960227 0.663245455 0.246635748 0.168139941 863.5803512 2927733.078 0.044964916 0.075931963 5.57E-06 5.25406838 -0.198714772 ACKVDSPT(ph)VTTTLK ddPTM_HeLa_A486_30min_R1 1 ACKVDSPTVTTTLK 14 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0 Q07866-4 KLC1 Kinesin light chain 1 1 0 ACKVDS(0.441)PT(0.559)VTTTLK 170.61 4.37E-12 1587600000 2243900 1947100 902240 1098200 2231000 2207800 3328800 3150000 1161100 3493900 TRUE FALSE FALSE 2086614.198 1792804.705 1251611.491 2556665.1 1951167.177 1935424.083 2495899.032 2432813.764 1261745.083 2619004.699 0.796720296 0.684536651 0.477895855 0.976197218 0.745003313 0.738992215 0.952995248 0.928907751 0.481765109 1 21.32058722 -5.267343494 24.99350934 0.826561705 0.656199507 0.202119231 0.162627788 793.4511963 3358867.338 0.044788717 0.068452384 5.40E-06 5.267343494 -0.170362198 ACLISLGYDVENDRQGEAEFNR ddPTM_HeLa_A485_30min_R1 3 ACLISLGYDVENDRQGEAEFNR 22 1 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ;; ;; 221.81 3.59E-35 233332000 71397 91519 95677 75339 159375 78521 112418 128881 85710 112142 FALSE FALSE TRUE 87279.01633 102221.3509 131071.9038 79454.5788 143507.0654 82632.23814 88398.97593 97272.73267 102911.2108 84187.06322 1.036727176 1.214216853 1.556912651 0.943786085 1.70462135 0.981531306 1.050030403 1.155435633 1.222411222 1 16.36131094 ACPGPPPPS(ph)PEPLAR ddPTM_HeLa_A485_30min_R1 1 ACPGPPPPSPEPLAR 15 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 ACPGPPPPS(1)PEPLAR 147.35 3.26E-07 0 102420 91360 77841 115550 137380 101840 149080 139570 104890 190530 TRUE FALSE FALSE 125202.9757 102043.7573 106637.6251 121862.2039 123701.9648 107172.1849 117227.8401 105340.2387 125940.4609 143034.3774 0.875334852 0.713421201 0.74553843 0.851978427 0.864840796 0.749275711 0.819578078 0.736467977 0.880490852 1 17.12600241 -8.025526929 5.360311602 0.999921482 0.794187172 0.579019227 0.054633407 0.11858858 13.55033194 0.052609022 0.013687148 9.43E-09 8.025526929 -0.20573431 ACQSIYPLHDVFVR ddPTM_HeLa_A485_30min_R1 4 ACQSIYPLHDVFVR 14 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09 D6R9B6 RPS3A 40S ribosomal protein S3a 0 0 ;;; ;;; 174.62 6.25E-12 451507000 383165 485852 526637 404334 608873 482379 584872 629630 506624 616565 FALSE FALSE TRUE 468398.7323 542668.165 721461.9415 426421.7426 548251.4662 507635.6185 459909.3192 475212.2553 608298.7898 462866.6925 1.011951691 1.172407032 1.558681912 0.921262535 1.184469471 1.096720993 0.993610745 1.026671962 1.314198666 1 18.82023723 ACQSIYPLHDVFVR ddPTM_HeLa_A486_30min_R1 2 ACQSIYPLHDVFVR 14 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09 D6R9B6 RPS3A 40S ribosomal protein S3a 0 0 ; ; 141 2.99E-06 392670000 336230 396470 334140 124368 481640 316160 402530 408400 321540 359300 FALSE FALSE TRUE 312662.0133 365052.2733 463527.9566 289534.9892 421228.2201 277155.3937 301812.7365 315416.2353 349411.3461 269328.9413 1.160892742 1.355414206 1.721047706 1.075023678 1.563991667 1.029059084 1.120610117 1.171118981 1.29734051 1 18.03900974 -6.273707112 24.98674 1.134132198 1.376699761 0.311361004 0.186790696 1005.492402 2047966.897 0.064170967 0.056998332 5.32E-07 6.273707112 0.242567563 ACRPPGS(ph)PGR ddPTM_HeLa_A485_30min_R1 5 ACRPPGSPGR 10 1 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 0 ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR ;;;; 96.82 0.0010653 1277733000 593802 679908 785279 652603 716888 575197 619601 544144 654453 785906 TRUE FALSE FALSE 725891.2063 759417.3262 1075786.38 688253.0494 645512.1136 605313.4255 487218.1847 410691.8308 785795.7141 589994.0977 1.230336387 1.287160887 1.823384987 1.166542262 1.094099273 1.025965222 0.825801795 0.696094812 1.331870466 1 19.170341 -5.644061816 2.746863271 0.965411456 1.435933742 0.452639091 0.217489055 0.236747373 3.610973034 0.069462343 0.09378867 2.27E-06 5.644061816 0.470522286 ACRPPGS(ph)PGR ddPTM_HeLa_A486_30min_R1 6 ACRPPGSPGR 10 1 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 0 ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR;ACRPPGS(1)PGR ;;;;; 100.38 0.00079743 1399784000 577343 751686 627363 192247 661210 589108 595319 596579 619379 646603 TRUE FALSE FALSE 536874.2371 692119.6638 870294.755 447560.7316 578274.8763 516429.8446 446363.8896 460750.9849 673067.2704 484689.4001 1.107666553 1.427965339 1.795572081 0.923396987 1.193083398 1.065486153 0.92092769 0.950610813 1.388656881 1 18.88670101 -5.283763772 24.99502325 1.060691403 1.442157807 0.422133972 0.204030494 735.8034519 823824.6871 0.057658051 0.085594577 5.20E-06 5.283763772 0.381466403 ACRPPGS(ph)PGRAPPPTPAPSGCDPR ddPTM_HeLa_A485_30min_R1 3 ACRPPGSPGRAPPPTPAPSGCDPR 24 2 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 0 ACRPPGS(1)PGRAPPPTPAPSGCDPR;ACRPPGS(0.994)PGRAPPPT(0.005)PAPS(0.001)GCDPR;ACRPPGS(1)PGRAPPPTPAPSGCDPR ;; 86.869 0.0014679 1779980000 835541 1075670 996920 1085508 1267710 1191410 1390850 1622260 1003210 1305660 TRUE FALSE FALSE 1021404.213 1201460.249 1365722.193 1144806.553 1141492.341 1253790.385 1093683.535 1224398.191 1204545.045 980182.9909 1.042054619 1.225750968 1.393333904 1.167951866 1.164570648 1.279139096 1.11579526 1.249152661 1.22889813 1 19.90269159 -10.19470972 4.307197612 0.999931896 1.211636349 0.321026439 0.090300764 6.21E-05 1.16E-05 0.087001184 0.021093726 6.39E-11 10.19470972 0.211704452 ACRPPGS(ph)PGRAPPPTPAPSGCDPR ddPTM_HeLa_A486_30min_R1 1 ACRPPGSPGRAPPPTPAPSGCDPR 24 2 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 0 ACRPPGS(0.998)PGRAPPPT(0.002)PAPSGCDPR 48.947 0.029516 70171000 36356 34379 37036 15214 50084 31399 43419 48974 29757 41965 TRUE FALSE FALSE 33807.63214 31654.68283 51377.33106 35418.96087 43801.99771 27525.31062 32555.10696 37823.68929 32336.36072 31456.69085 1.074735811 1.006294113 1.633271958 1.125959531 1.392454086 0.875022448 1.034918362 1.20240522 1.027964476 1 14.94107929 -6.257789323 24.99453263 1.041140946 1.247981778 0.265261441 0.18114739 493.2996774 3377982.25 0.0619598 0.059708384 5.52E-07 6.257789323 0.206840832 ACS(ph)VEELYAIPPDADVAK ddPTM_HeLa_A485_30min_R1 1 ACSVEELYAIPPDADVAK 18 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ACS(1)VEELYAIPPDADVAK 128.26 1.01E-05 31886000 72621 64639 51758 92640 95423 67298 111230 107640 68125 130970 TRUE FALSE FALSE 88775.29091 72197.96877 70905.43803 97700.68862 85922.35107 70821.61922 87464.80183 81241.12123 81797.06262 98321.58932 0.902907403 0.73430433 0.72115838 0.993685001 0.87389099 0.720305883 0.889578804 0.826279577 0.831933893 1 16.58522062 -14 0.360249483 3.091546218 0.825869611 0.26163215 0.084092869 697.8112395 5.572134948 1131.55996 0.063709612 1.00E-14 14 -2.265676607 ACTGLSGPGSGSKS(ph)PPATR ddPTM_HeLa_A485_30min_R1 4 ACTGLSGPGSGSKSPPATR 19 1 I3L2J0;I3L2I4 I3L2J0 CIC 1 0 ACTGLSGPGSGS(0.012)KS(0.988)PPATR;ACTGLSGPGS(0.001)GS(0.02)KS(0.978)PPATR;ACT(0.002)GLS(0.005)GPGS(0.062)GS(0.092)KS(0.832)PPAT(0.007)R;ACTGLSGPGS(0.001)GS(0.237)KS(0.761)PPAT(0.001)R ;;; 210.14 2.93E-26 1691880000 1071160 1349660 1142070 1230690 1765930 1617190 2232190 2543000 1315280 1815560 TRUE FALSE FALSE 1309435.847 1507490.997 1564569.218 1297919.478 1590107.809 1701863.568 1755264.371 1919325.263 1579244.632 1362974.305 0.960719393 1.106030386 1.147908081 0.952269954 1.166645477 1.24863951 1.287819121 1.408188882 1.158675278 1 20.37832693 -5.98456262 5.197752617 1.246913727 1.053327447 0.34687217 0.112767448 0.182258524 14.47586644 0.035238491 0.038766373 1.04E-06 5.98456262 -0.19358628 ACTGLSGPGSGSKS(ph)PPATR ddPTM_HeLa_A486_30min_R1 4 ACTGLSGPGSGSKSPPATR 19 1 I3L2J0;I3L2I4 I3L2J0 CIC 1 0 ACTGLSGPGS(0.009)GS(0.078)KS(0.913)PPAT(0.001)R;ACTGLSGPGS(0.019)GS(0.054)KS(0.906)PPAT(0.02)R;ACTGLSGPGSGS(0.001)KS(0.999)PPATR;ACTGLSGPGS(0.035)GS(0.36)KS(0.589)PPAT(0.016)R ;;; 219.16 5.89E-35 1260670000 1419050 1338760 1116040 681048 1945250 1606380 2120560 2147530 1276500 2012300 TRUE FALSE FALSE 1319581.923 1232671.782 1548200.577 1585514.162 1701258.606 1408201.168 1589973.459 1658584.299 1387148.048 1508406.982 0.874818228 0.817201058 1.026381205 1.051118286 1.127851188 0.93356845 1.054074582 1.099560211 0.919611262 1 20.5245943 -4.768030003 24.82158891 1.032238179 0.846009626 0.566706024 0.062977303 83.05360311 312800.9955 0.015983847 0.034569137 1.71E-05 4.768030003 -0.186228553 ACTLTVFPPEENPGS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 ACTLTVFPPEENPGSPSR 18 0 Q9P2J3 Q9P2J3 KLHL9 Kelch-like protein 9 1 0 ACTLTVFPPEENPGS(0.889)PS(0.111)R 102.78 8.20E-05 0 49290 54322 40385 17016 57577 49247 56112 55835 45147 46539 TRUE FALSE FALSE 45835.02553 50017.32688 56023.15355 39614.10794 50355.15578 43171.40585 42072.18411 43122.58937 49060.37831 34885.33148 1.313876738 1.433763842 1.605922924 1.135552 1.443447823 1.237523166 1.206013597 1.236123824 1.406332582 1 15.09033292 -13.77386556 0.100215574 2.30E-11 1.561172191 0.397511899 0.129275056 177.7141752 1.267880262 37.82437839 2.195518403 1.68E-14 13.77386556 1.561172191 ACTLTVFPPEETTPS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 ACTLTVFPPEETTPSPSR 18 0 A0A0C4DG80;Q9P2N7-2;Q9P2N7-3;Q9P2N7-4;Q9P2N7;Q9P2N7-5 A0A0C4DG80 KLHL13 Kelch-like protein 13 1 0 ACTLTVFPPEET(0.011)T(0.011)PS(0.811)PS(0.167)R;ACTLTVFPPEET(0.033)T(0.033)PS(0.467)PS(0.467)R ; 59.728 0.012802 62410000 85320 88666 89976 30663 112375 64551 94124 87566 76748 84817 TRUE FALSE FALSE 79339.50859 81639.78324 124817.1168 71385.01362 98279.87964 56587.35393 70573.17966 67629.13335 83400.57843 63578.27113 1.247902895 1.284083096 1.96320401 1.122789474 1.54580925 0.890042351 1.110020427 1.06371457 1.311778017 1 15.95624617 -6.253254123 24.98063933 1.081275066 1.436746825 0.369998458 0.233244757 690.5621879 2107532.465 0.076758835 0.075505381 5.58E-07 6.253254123 0.355471759 ADAASSLTVDVT(ph)PPTAK ddPTM_HeLa_A485_30min_R1 4 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 ADAASSLTVDVT(0.997)PPT(0.003)AK;ADAASSLTVDVT(0.997)PPT(0.003)AK;ADAASSLTVDVT(0.999)PPT(0.001)AK;ADAASSLTVDVT(1)PPTAK ;;; 315.21 1.75E-78 1155320000 1861690 1811050 1526800 2282710 2434280 2106230 2697090 2956920 1818920 3026730 TRUE FALSE FALSE 2275816.518 2022836.543 2091626.855 2407408.667 2191914.536 2216508.946 2120834.688 2231730.734 2183960.56 2272221.914 1.001581977 0.890246032 0.920520501 1.059495401 0.964656895 0.975480842 0.933374806 0.982179918 0.961156367 1 21.11567231 ADAASSLTVDVT(ph)PPTAK ddPTM_HeLa_A486_30min_R1 4 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 ADAASSLTVDVT(1)PPTAK;ADAASSLTVDVT(0.978)PPT(0.022)AK;ADAASSLTVDVT(0.985)PPT(0.015)AK;ADAASSLTVDVT(1)PPTAK ;;; 348.04 1.71E-104 1353630000 2499880 2807650 1742140 1304690 2754270 2847690 3258860 3277760 2157430 3199600 TRUE FALSE FALSE 2324651.321 2585161.589 2416743.264 3037384.255 2408803.774 2496370.961 2443458.759 2531485.601 2344437.769 2398399.334 0.969251154 1.077869541 1.007648405 1.266421405 1.004338077 1.040848755 1.018787291 1.05548962 0.977501009 1 21.19364046 ADADPSPT(ph)SPPTAR ddPTM_HeLa_A485_30min_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5 Q9NWZ5-3 UCKL1 Uridine-cytidine kinase-like 1 1 0 ADADPS(0.023)PT(0.675)S(0.259)PPT(0.042)AR 107.99 0.0015401 369160000 346370 517930 485070 419580 571660 441000 535510 499150 457080 529030 TRUE FALSE FALSE 423418.8115 578497.4081 664517.5784 442500.593 514743.5232 464090.0781 421093.9138 376732.6799 548811.7634 397152.5571 1.066136435 1.456612573 1.673204834 1.114182913 1.296085129 1.168543598 1.060282519 0.948584299 1.381866373 1 18.59933377 -5.916124507 1.395071528 1.101882579 1.381802373 0.242319521 0.190376831 0.565254367 2.285792659 0.077688371 0.094009147 1.21E-06 5.916124507 0.279919794 ADADPSPTS(ph)PPTAR ddPTM_HeLa_A485_30min_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5 Q9NWZ5-3 UCKL1 Uridine-cytidine kinase-like 1 1 0 ADADPS(0.1)PT(0.285)S(0.598)PPT(0.017)AR 91.307 0.0013123 415760000 326370 403290 417380 342880 486330 355910 444170 443630 405760 492880 TRUE FALSE FALSE 398969.8805 450451.2573 571786.2306 361610.6662 437909.2776 374544.8973 349269.451 334829.0469 487192.3101 370014.0868 1.078255923 1.217389482 1.545309357 0.977288917 1.18349353 1.012244968 0.943935551 0.904908918 1.316685844 1 18.49722067 -5.310710362 24.99922788 1.044177302 1.274026502 0.314545666 0.15674431 438.725232 222600.5351 0.044171624 0.065517244 4.89E-06 5.310710362 0.2298492 ADADPSPTS(ph)PPTAR ddPTM_HeLa_A486_30min_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5 Q9NWZ5-3 UCKL1 Uridine-cytidine kinase-like 1 1 0 ADADPS(0.067)PT(0.191)S(0.718)PPT(0.024)AR 75.102 0.0076697 474800000 363210 428170 377110 150370 538650 416490 472980 482930 407130 466650 TRUE FALSE FALSE 337750.8546 394240.2498 523137.0914 350068.9593 471087.4943 365107.6984 354635.4013 372977.3813 442420.3562 349797.8026 0.965560252 1.127051819 1.495541388 1.000775181 1.346742292 1.043767844 1.0138297 1.06626565 1.264788838 1 18.4161617 ADAETLRK ddPTM_HeLa_A485_30min_R1 1 ADAETLRK 8 1 P08758;E9PHT9;D6RBE9;D6RCN3 P08758 ANXA5 Annexin A5;Annexin 0 0 108.74 0.0043964 18588000 27726 30679 26826 29662 38618 35721 46306 51403 32774 44303 FALSE FALSE TRUE 33893.55305 34266.64218 36750.05372 31282.35995 34773.05632 37591.29632 36412.34481 38796.33365 39351.44118 33259.07744 1.019076765 1.030294428 1.104963113 0.940566076 1.045520772 1.130256737 1.094809226 1.166488569 1.183178976 1 15.02146053 -6.199846272 4.759757893 1.124243744 1.026256937 0.345386597 0.059448209 0.230983834 10.74318237 0.019701764 0.019470071 6.31E-07 6.199846272 -0.097986807 ADALQAGASQFETS(ph)AAK ddPTM_HeLa_A485_30min_R1 2 ADALQAGASQFETSAAK 17 0 Q15836;K7ENK9;K7EKX0;J3QRU4;F8WCA0;L7N2F9;P63027 Q15836 VAMP3;VAMP2 Vesicle-associated membrane protein 3;Vesicle-associated membrane protein 2 1 0 ADALQAGASQFET(0.033)S(0.967)AAK;ADALQAGAS(0.003)QFET(0.052)S(0.945)AAK ; 173.98 1.02E-12 0 279211 221204 139849 429190 248616 216347 290367 262510 189013 691430 TRUE FALSE FALSE 341320.5237 247071.8836 191584.9647 452635.5629 223862.9181 227674.5944 228327.7184 198129.0109 226946.1754 519069.2258 0.657562627 0.475990237 0.369093283 0.872013867 0.431277577 0.438620868 0.439879128 0.381700554 0.43721755 1 18.98556743 -10.1610004 5.550098833 1.000010268 0.497607135 0.515556162 0.145272851 2.01E-05 3.04E-06 0.142165972 0.034479553 6.90E-11 10.1610004 -0.502403134 ADALQAGASQFETS(ph)AAK ddPTM_HeLa_A486_30min_R1 1 ADALQAGASQFETSAAK 17 0 Q15836;K7ENK9;K7EKX0;J3QRU4;F8WCA0;L7N2F9;P63027 Q15836 VAMP3;VAMP2 Vesicle-associated membrane protein 3;Vesicle-associated membrane protein 2 1 0 ADALQAGAS(0.001)QFET(0.013)S(0.987)AAK 189.48 6.81E-18 123420000 181680 198300 128100 77259 198220 258390 232590 206070 206460 344040 TRUE FALSE FALSE 168945.1702 182585.9858 177703.7506 179862.8565 173357.3993 226512.4689 174393.5219 159152.3595 224356.119 257890.1447 0.655105182 0.707999082 0.689067629 0.697439821 0.67221413 0.878329295 0.67623182 0.617132383 0.869967789 1 17.97639712 -7.975068469 4.891269196 0.999332698 0.704153612 0.69397994 0.065365053 0.087725077 5.564246428 0.064199295 0.016751112 1.06E-08 7.975068469 -0.295179086 ADAPDAGAQS(ph)DSELPSYHQNDVSLDR ddPTM_HeLa_A485_30min_R1 5 ADAPDAGAQSDSELPSYHQNDVSLDR 26 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 ADAPDAGAQS(0.998)DS(0.002)ELPSYHQNDVSLDR;ADAPDAGAQS(0.999)DS(0.001)ELPSYHQNDVSLDR;ADAPDAGAQS(1)DSELPSYHQNDVSLDR;ADAPDAGAQS(1)DSELPSYHQNDVSLDR;ADAPDAGAQS(1)DSELPSYHQNDVSLDR ;;;; 333.89 1.06E-123 22001400000 1624394 2567491 2707593 990935 3196349 1882678 2314601 2705922 2382992 1954770 TRUE FALSE FALSE 1985734.841 2867736.738 3709244.323 1045067.27 2878109.27 1981252.109 1820067.588 2042290.387 2861236.636 1467481.814 1.353158058 1.954188945 2.527625411 0.712150065 1.961257198 1.350103347 1.240265856 1.391697238 1.94975952 1 20.48491119 -5.254065655 24.99854261 1.406625969 1.945910543 0.256697268 0.443977626 840.8788721 2850756.446 0.117935618 0.199201604 5.57E-06 5.254065655 0.539284575 ADAPDAGAQS(ph)DSELPSYHQNDVSLDR ddPTM_HeLa_A486_30min_R1 4 ADAPDAGAQSDSELPSYHQNDVSLDR 26 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 ADAPDAGAQS(1)DSELPSYHQNDVSLDR;ADAPDAGAQS(0.999)DS(0.001)ELPSYHQNDVSLDR;ADAPDAGAQS(1)DSELPSYHQNDVSLDR;ADAPDAGAQS(1)DSELPSYHQNDVSLDR ;;; 331.03 1.33E-123 23755800000 3249530 3269380 3085970 300651 4056770 2335450 2923680 2741970 2745270 1565200 TRUE FALSE FALSE 3021754.728 3010302.422 4280940.229 699930.7221 3547932.079 2047325.924 2192144.34 2117683.288 2983232.214 1173263.732 2.57551192 2.565750853 3.648745045 0.596567253 3.023985129 1.74498356 1.868415668 1.804950779 2.542678284 1 20.16209592 -1 0.066553841 3.48E-13 7.012260532 0.228243774 0.766589995 426.3716978 2.108902482 40.85530697 282.9537251 0.1 1 7.012260532 ADAPDAGAQS(ph)DSELPSYHQNDVSLDRGYT(ph)SDSEVYTDHGRPGK ddPTM_HeLa_A485_30min_R1 1 ADAPDAGAQSDSELPSYHQNDVSLDRGYTSDSEVYTDHGRPGK 43 2 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 ADAPDAGAQS(0.846)DS(0.081)ELPS(0.064)Y(0.051)HQNDVS(0.121)LDRGY(0.078)T(0.366)S(0.353)DS(0.017)EVY(0.007)T(0.016)DHGRPGK 49.905 0.013525 186100000 5564.3 15695 10409 5525.4 13373 15243 18769 50749 9829.4 7266.7 TRUE FALSE FALSE 6802.059338 17530.39372 14259.72225 5827.238611 12041.53716 16041.09991 14758.84982 38302.72818 11802.07042 5455.245424 1.246884202 3.213493136 2.613946972 1.06819 2.207331885 2.94049097 2.705441951 7.02126581 2.163435282 1 12.41342839 -6.727673309 2.482077386 3.794615435 2.153509282 0.073585145 1.585361905 0.505947954 6.370761254 0.703310399 0.479205279 1.87E-07 6.727673309 -1.641106153 ADDGRPFPQVIK ddPTM_HeLa_A485_30min_R1 5 ADDGRPFPQVIK 12 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;;; ;;;; 147.71 2.08E-07 1363680000 1590877 1848966 1635036 1837054 2357080 2141195 2615410 2903210 1804158 2527460 FALSE FALSE TRUE 1944762.1 2065186.49 2239903.856 1937407.608 2122400.839 2253304.659 2056606.288 2191193.195 2166235.962 1897410.736 1.024955779 1.088423529 1.180505524 1.021079712 1.118577437 1.187568203 1.083901471 1.154833349 1.141680038 1 20.85560059 -5.97086155 24.98174207 1.124935033 1.084592485 0.055366533 0.062605216 541.11761 463922.4221 0.018776882 0.021290807 1.07E-06 5.97086155 -0.040342548 ADDGRPFPQVIK ddPTM_HeLa_A486_30min_R1 3 ADDGRPFPQVIK 12 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;; ;; 142.91 2.89E-07 948690000 981070 1189220 881650 535090 1840260 1174280 1338900 1411650 1083010 1415590 FALSE FALSE TRUE 912302.0593 1094981.876 1223048.491 1245716.562 1609437.431 1029409.273 1003893.059 1090248.111 1176886.179 1061117.05 0.859756291 1.031914317 1.152604693 1.173967153 1.516738828 0.970118492 0.946071933 1.027453202 1.109101186 1 20.01715238 ADDTDSQSWRS(ph)PLK ddPTM_HeLa_A485_30min_R1 6 ADDTDSQSWRSPLK 14 1 O75369-8 O75369-8 FLNB Filamin-B 1 0 ADDTDSQSWRS(1)PLK;ADDTDSQS(0.001)WRS(0.998)PLK;ADDTDSQSWRS(1)PLK;ADDTDSQSWRS(1)PLK;ADDTDSQSWRS(1)PLK;ADDTDS(0.002)QS(0.057)WRS(0.942)PLK ;;;;; 242.59 1.08E-35 10567380000 7375780 8888410 6348600 9810330 15301870 12093090 17867430 20960660 8266570 15986930 TRUE FALSE FALSE 9016496.815 9927832.231 8697211.327 10346243.49 13778362.09 12726265.49 14049907.62 15820025.27 9925594.774 12001682.57 0.751269396 0.827203367 0.724666002 0.862066083 1.14803587 1.060373445 1.170661492 1.318150616 0.827016938 1 23.51673334 -5.647126794 4.140303569 1.105998876 0.776093073 0.588782128 0.122133781 0.145078603 4.486847537 0.035949204 0.046926629 2.25E-06 5.647126794 -0.329905803 ADDTDSQSWRS(ph)PLK ddPTM_HeLa_A486_30min_R1 5 ADDTDSQSWRSPLK 14 1 O75369-8 O75369-8 FLNB Filamin-B 1 0 ADDTDS(0.013)QS(0.115)WRS(0.872)PLK;ADDTDSQSWRS(1)PLK;ADDTDSQSWRS(1)PLK;ADDTDSQSWRS(1)PLK;ADDTDSQSWRS(1)PLK ;;;; 284.84 1.07E-49 9377320000 8519660 7880520 5845650 5766738 13119900 10411780 15884510 15994850 6563070 13115420 TRUE FALSE FALSE 7922475.83 7256038.895 8109242.232 13425257.5 11474279.8 9127280.443 11910037.59 12353171.82 7131962.192 9831233.465 0.805847594 0.73805987 0.824844844 1.365572036 1.167125147 0.928396266 1.211448963 1.256523087 0.725439205 1 23.228941 -5.082483692 9.023690831 1.105125649 0.774235291 0.39804765 0.171661027 0.354867091 36.45939444 0.045992561 0.07995678 8.27E-06 5.082483692 -0.330890358 ADEASELACPT(ph)PK ddPTM_HeLa_A485_30min_R1 1 ADEASELACPTPK 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 ADEASELACPT(1)PK 184.22 3.84E-12 371900000 374830 282340 261320 763800 438150 317520 532890 365960 287810 991920 TRUE FALSE FALSE 458209.6404 315357.207 357993.1424 805524.46 394526.2476 334144.8562 419033.6982 276207.7362 345570.8271 744652.5989 0.615333433 0.423495745 0.480751887 1.081745315 0.52981249 0.448725831 0.562723744 0.370921604 0.46406986 1 19.506208 -10.92110299 2.412853209 1.287723991 0.553850478 0.334276198 0.18921421 35578082.96 17954071.17 57822193.8 0.049887039 1.20E-11 10.92110299 -0.733873513 ADEASELACPT(ph)PK ddPTM_HeLa_A486_30min_R1 4 ADEASELACPTPK 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK;ADEASELACPT(1)PK ;;; 182.7 1.92E-16 3537970000 2735600 3251120 1569480 1789580 2859400 3582820 4631780 4234240 2643880 5202320 TRUE FALSE FALSE 2543848.567 2993489.411 2177224.688 4166232.68 2500747.389 3140808.096 3472859.654 3270195.985 2873053.647 3899625.211 0.652331552 0.767635157 0.558316395 1.06836746 0.641278906 0.805412809 0.890562417 0.83859238 0.736751224 1 21.89490404 -5.354355283 0.045565162 1.507555168 4.74E-11 0.258872658 0.131135654 277.3259766 2.999939875 39.33675347 60.5916385 4.42E-06 5.354355283 -1.507555168 ADEFADQSPGNLS(ph)SSSLR ddPTM_HeLa_A486_30min_R1 1 ADEFADQSPGNLSSSSLR 18 0 H3BLY2;A0A087WV86;Q6PGQ7-2;Q6PGQ7 H3BLY2 BORA Protein aurora borealis 1 0 ADEFADQS(0.088)PGNLS(0.781)S(0.044)S(0.044)S(0.044)LR 74.732 0.0010523 0 35930 50296 39291 24455 60181 50605 64501 63673 44611 54874 TRUE FALSE FALSE 33411.49254 46310.36179 54505.52745 56932.47589 52632.53781 44361.86961 48362.16758 49176.04787 48477.9174 41133.19323 0.812275681 1.125863522 1.325098374 1.384100562 1.279563624 1.07849321 1.175745518 1.195531978 1.178559543 1 15.32801545 -9.672600754 13.83208602 1.000029599 1.183238024 0.104521203 0.148947735 0 0 0.152160414 0.036904321 2.13E-10 9.672600754 0.183208425 ADEGISFR ddPTM_HeLa_A485_30min_R1 6 ADEGISFR 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;;;; ;;;;; 219.16 1.12E-14 1427910000 1232250 1271520 1418950 1306670 1774150 1629470 1966200 1959960 1264640 1785200 FALSE FALSE TRUE 1506359.761 1420213.203 1943878.652 1378050.073 1597509.397 1714786.53 1546105.308 1479276.737 1518441.648 1340182.494 1.123995999 1.059716277 1.450458173 1.028255539 1.192008852 1.279517183 1.153652815 1.103787539 1.133011105 1 20.35399804 -8.06326166 0.93700011 1.003107142 1.187032613 0.190749706 0.112840048 1.090285747 2.131066751 0.106219134 0.036306104 8.64E-09 8.06326166 0.183925471 ADEGISFR ddPTM_HeLa_A486_30min_R1 5 ADEGISFR 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;;; ;;;; 174.27 1.30E-05 1425176000 744157.5 1157141 1147000 403318.3 1999367 1163497 1307278 1354061 1208075 1201453 FALSE FALSE TRUE 691995.9021 1065444.933 1591149.118 938945.385 1748587.748 1019956.57 980183.2174 1045770.869 1312791.914 900601.3487 0.768370937 1.183037239 1.766762975 1.042576037 1.94157798 1.132528361 1.088365256 1.161191765 1.457683708 1 19.78052911 ADEGKKETS(ph)PESSLIQDEIAVK ddPTM_HeLa_A486_30min_R1 1 ADEGKKETSPESSLIQDEIAVK 22 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ADEGKKET(0.219)S(0.781)PESSLIQDEIAVK 159.86 3.68E-12 317180000 308500 211410 87416 362990 276060 416850 746680 712360 186250 751670 TRUE FALSE FALSE 286875.7431 194657.1017 121265.8163 845059.0645 241433.9806 365423.2852 559852.7664 550171.1787 202394.3 563446.9394 0.509144203 0.34547548 0.215221359 1.499802387 0.428494617 0.648549596 0.993621098 0.976438312 0.359207382 1 19.10392023 ADEGLPANESFLNGNLAGASLS(ph)PLHTK ddPTM_HeLa_A485_30min_R1 1 ADEGLPANESFLNGNLAGASLSPLHTK 27 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 ADEGLPANESFLNGNLAGAS(0.004)LS(0.994)PLHT(0.003)K 177.99 2.33E-15 107090000 54987 63538 51526 63175 86380 72571 85196 89535 69070 90507 TRUE FALSE FALSE 67218.66845 70968.21639 70587.61158 66626.09028 77779.7039 76370.70534 66993.17861 67576.40086 82931.71545 67945.27056 0.989306068 1.044490894 1.038889256 0.980584664 1.144740513 1.124003256 0.98598737 0.994571076 1.220566417 1 16.05208551 -5.739818044 24.99924094 1.075708419 1.017370928 0.162278194 0.071962474 524.2960068 606204.5064 0.021492392 0.027722214 1.82E-06 5.739818044 -0.058337491 ADEGLPANESFLNGNLAGASLS(ph)PLHTK ddPTM_HeLa_A486_30min_R1 1 ADEGLPANESFLNGNLAGASLSPLHTK 27 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 ADEGLPANESFLNGNLAGAS(0.007)LS(0.992)PLHTK 164.29 7.52E-14 97315000 86212 100890 66642 32262 106800 98647 121180 116940 79381 119830 TRUE FALSE FALSE 80168.984 92895.10896 92447.56713 75107.56643 93404.14813 86476.93611 90859.48229 90315.31478 86261.80899 89823.78804 0.892513951 1.034192734 1.029210292 0.836165654 1.039859821 0.962739804 1.011530289 1.005472122 0.960344814 1 16.45480994 ADFCIIHYAGK ddPTM_HeLa_A485_30min_R1 1 ADFCIIHYAGK 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 107.4 0.0018568 17818000 42535 43209 42765 47431 60340 47488 57134 56288 47562 72259 FALSE FALSE TRUE 51996.76401 48261.91668 58585.5531 50022.03543 54332.33773 49974.39825 44926.85416 42483.27974 57107.25714 54246.16113 0.958533524 0.88968354 1.079994453 0.922130422 1.001588621 0.921252255 0.828203383 0.783157349 1.052742829 1 15.72723342 -6.512302589 23.58708058 0.894637409 0.968522061 0.065839338 0.086560292 496.6057129 1107545.057 0.031017226 0.025651293 3.07E-07 6.512302589 0.073884653 ADFCIIHYAGK ddPTM_HeLa_A486_30min_R1 2 ADFCIIHYAGK 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 ; ; 90.685 0.0081472 43699000 55667 88742 74884 32921 106393 87747 99364 101641 85538 84601 FALSE FALSE TRUE 51765.03076 81709.76073 103881.0903 76641.75174 93048.19786 76921.66729 74502.07623 78499.56311 92952.50271 63416.35894 0.816272514 1.288465028 1.638080331 1.208548599 1.467258597 1.212962532 1.17480848 1.237844058 1.465749599 1 15.95256743 ADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDS(ph)R ddPTM_HeLa_A486_30min_R1 1 ADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSR 34 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ADGATSDDLDLHDDRLSYLSAPGSEYSMY(0.001)S(0.071)T(0.256)DS(0.673)R 187.89 2.72E-21 96487000 32055 37573 35811 11696 60586 36886 45838 51531 39041 41135 TRUE FALSE FALSE 29808.11003 34595.57864 49677.97825 27228.87908 52986.73894 32335.38035 34368.84758 39798.51621 42425.10531 30834.52826 0.96671205 1.121975285 1.611115235 0.883064559 1.718422234 1.048674398 1.11462213 1.290712667 1.37589604 1 14.91225915 -11.23518888 2.206636362 0.204719238 1.240652064 0.071255545 0.256132665 5310715.148 976189.5816 21084754.12 0.060401045 5.82E-12 11.23518888 1.035932826 ADGGTGDS(ph)SPSPGSSLPSPLSDPR ddPTM_HeLa_A485_30min_R1 1 ADGGTGDSSPSPGSSLPSPLSDPR 24 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 ADGGT(0.001)GDS(0.41)S(0.41)PS(0.172)PGS(0.002)S(0.001)LPS(0.001)PLS(0.001)DPR 54.637 0.0014149 0 18916 23565 27712 19265 40752 23960 30549 27871 23491 31214 TRUE FALSE FALSE 23123.79894 26320.72176 37963.82199 20317.39817 36694.58779 25214.50855 24021.95659 21035.59355 28205.42823 23432.92425 0.986808078 1.123236754 1.620106035 0.86704493 1.565941468 1.076029107 1.025136954 0.897693917 1.203666599 1 14.51624938 -6.501905159 24.63788614 1.027025102 1.237088505 0.153630195 0.227166053 1162.444562 1365538.636 0.077470018 0.06758136 3.15E-07 6.501905159 0.210063403 ADGRAS(ph)PLYASYK ddPTM_HeLa_A485_30min_R1 4 ADGRASPLYASYK 13 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 ADGRAS(1)PLYASYK;ADGRAS(1)PLYASYK;ADGRAS(1)PLYASYK;ADGRAS(1)PLYASYK ;;; 135.18 5.78E-06 2092869000 2079027 2377801 1991149 2599152 3280090 3049130 3905550 4089210 2194595 3502460 TRUE FALSE FALSE 2541499.384 2655864.143 2727757.874 2741137.092 2953512.723 3208777.732 3071097.337 3086324.836 2635030.086 2629361.18 0.966584356 1.01007962 1.037422281 1.042510673 1.123281482 1.220364002 1.168001323 1.173792653 1.002156001 1 21.3262809 -5.60144494 2.379781361 1.131784012 1.005100037 0.330447843 0.069062038 0.307899908 3.535765913 0.022193659 0.031480677 2.50E-06 5.60144494 -0.126683975 ADGRAS(ph)PLYASYK ddPTM_HeLa_A486_30min_R1 3 ADGRASPLYASYK 13 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 ADGRAS(1)PLYASYK;ADGRAS(1)PLYASYK;ADGRAS(1)PLYASYK ;; 121.95 9.69E-05 1172020000 1552620 1572160 1070020 653460 2130170 1600800 2053450 2105890 1358280 1960940 TRUE FALSE FALSE 1443789.356 1447576.316 1484360.4 1521287.904 1862984.216 1403309.572 1539655.091 1626424.818 1476016.804 1469907.86 0.982231196 0.984807521 1.009832276 1.034954602 1.267415643 0.954692202 1.04745007 1.106480795 1.004156004 1 20.48729429 -5.299816646 3.900368909 1.068634452 0.989941878 0.12846429 0.080127533 0.426615656 14.12820164 0.022937945 0.036941415 5.01E-06 5.299816646 -0.078692575 ADGSEVSFLEYY(ph)RK ddPTM_HeLa_A485_30min_R1 1 ADGSEVSFLEYYRK 14 1 Q96J94-3;Q96J94-2;Q96J94 Q96J94-3 PIWIL1 Piwi-like protein 1 1 0 ADGS(0.002)EVS(0.062)FLEY(0.006)Y(0.93)RK 42.336 0.009583 0 62074 130800 170380 12555 124760 89788 68311 70652 108580 28077 TRUE FALSE FALSE 75882.14715 146095.9222 233410.6521 13240.84786 112338.4563 94489.16084 53715.7968 53324.48622 130371.01 21077.92062 3.600077471 6.931230306 11.07370392 0.628185678 5.329674514 4.482850209 2.548439088 2.529874136 6.185193141 1 14.36344493 -5.272022146 24.9989778 3.416812133 7.174626736 0.370011306 2.359174119 767.7836975 1813683.838 0.656238315 0.984957961 5.35E-06 5.272022146 3.757814603 ADGSEVSFLEYY(ph)RK ddPTM_HeLa_A486_30min_R1 1 ADGSEVSFLEYYRK 14 1 Q96J94-3;Q96J94-2;Q96J94 Q96J94-3 PIWIL1 Piwi-like protein 1 1 0 ADGS(0.003)EVS(0.012)FLEY(0.003)Y(0.983)RK 51.268 0.023992 238460000 216610 374170 562850 12499 518130 152090 106240 159180 312240 27427 TRUE FALSE FALSE 201426.7576 344519.4065 780800.5936 29098.30366 453141.304 133326.6821 79657.62831 122938.1889 339305.2146 20559.10068 9.797449835 16.75751347 37.97834379 1.415349052 22.04091079 6.485044468 3.874567742 5.979745456 16.50389382 1 14.32748954 -6.274935264 23.73847268 6.899002578 17.78443913 0.246393418 9.465309441 608.3751035 1070091.91 3.300101919 2.928985118 5.31E-07 6.274935264 10.88543656 ADGTTPFYADSTAET(ph)Y(ph)GKIVHY(ph)K ddPTM_HeLa_A485_30min_R1 1 ADGTTPFYADSTAETYGKIVHYK 23 1 Q09013-5 Q09013-5 3 0 ADGT(0.001)T(0.001)PFY(0.002)ADS(0.003)T(0.003)AET(0.997)Y(0.997)GKIVHY(0.997)K 46.833 0.022325 1699800000 163670 709880 1381600 86527 1044500 485030 249340 450970 936990 54171 TRUE FALSE FALSE 200077.8268 792894.2909 1892711.333 91253.75091 940505.9125 510425.4208 196066.4721 340368.9004 1125035.298 40667.16664 4.919886074 19.49716089 46.54150976 2.243917107 23.12691024 12.55129046 4.821247416 8.369624159 27.6644623 1 15.31157686 -6.412978842 5.146608242 10 19.80769676 0.094927657 12.95854341 0.543445208 21.2384559 4.695924068 4.095304913 3.86E-07 6.412978842 9.807696758 ADGTTPFYADSTAET(ph)Y(ph)GKIVHY(ph)K ddPTM_HeLa_A486_30min_R1 2 ADGTTPFYADSTAETYGKIVHYK 23 1 Q09013-5 Q09013-5 3 0 ADGT(0.002)T(0.002)PFY(0.003)ADS(0.003)T(0.003)AET(0.996)Y(0.996)GKIVHY(0.996)K;ADGT(0.002)T(0.002)PFY(0.006)ADS(0.006)T(0.006)AET(0.992)Y(0.992)GKIVHY(0.992)K ; 41.521 0.029461 4364300000 1243440 3246930 8823900 171291 6888300 942190 584310 1489420 3933620 184868 TRUE FALSE FALSE 1156281.277 2989631.442 12240750.39 398774.1046 6024305.183 825952.1773 438109.4578 1150311.58 4274589.349 138575.8495 8.344031671 21.5739716 88.33249398 2.877659462 43.47298035 5.960289475 3.16151378 8.300952755 30.84656788 1 17.08031633 -6.270464827 24.1068613 9.891900863 33.6993077 0.197228395 23.24144698 691.3544289 1846592.622 8.141984442 7.290181818 5.36E-07 6.270464827 23.80740684 ADGYEPPVQES(ph)V ddPTM_HeLa_A486_30min_R1 1 ADGYEPPVQESV 12 0 D6R9B6;H0Y9Y4;D6RAT0;P61247 D6R9B6 RPS3A 40S ribosomal protein S3a 1 0 ADGYEPPVQES(1)V 56.783 0.037278 234550000 280680 292970 129100 135810 210790 388530 444870 482830 184910 555880 TRUE FALSE FALSE 261005.7814 269753.9902 179090.9774 316172.5435 184350.7527 340597.1189 333558.8206 372900.1491 200938.1477 416684.0298 0.626387773 0.647382599 0.429800435 0.758782485 0.44242337 0.817399023 0.800507811 0.894923065 0.482231459 1 18.66859428 -6.284559065 24.6490197 0.79253846 0.586127521 0.339336586 0.151910092 804.443753 857653.4114 0.050490405 0.044558878 5.19E-07 6.284559065 -0.206410939 ADHGEPIGR ddPTM_HeLa_A485_30min_R1 7 ADHGEPIGR 9 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;;; ;;;;;; 155.42 1.18E-05 2544555000 574741 816566 812514 558767 954928 735963 888718 979380 746506 827009 FALSE FALSE TRUE 702590.1526 912056.2905 1113096.74 589291.0263 859852.0154 774496.8847 698836.1391 739185.5194 896322.9068 620850.8763 1.131656859 1.469042447 1.79285684 0.949166779 1.3849574 1.24747651 1.125610297 1.190600751 1.4437008 1 19.24388726 -5.271094871 24.99722049 1.207215955 1.464971101 0.267179396 0.205967353 933.7056533 2417280.417 0.057187555 0.086043166 5.36E-06 5.271094871 0.257755146 ADHGEPIGR ddPTM_HeLa_A486_30min_R1 7 ADHGEPIGR 9 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;;; ;;;;;; 136.57 0.000232 1798369000 808023.4 957899.9 890032.6 310191 1272042.1 846893.3 921968.4 1009520.7 772217.4 907303.2 FALSE FALSE TRUE 751385.1323 881992.4233 1234677.059 722140.3242 1112490.718 742412.2152 691282.1547 779674.8743 839153.826 680108.5732 1.104801736 1.296840619 1.815411697 1.061801531 1.635754587 1.091608376 1.016429114 1.146397656 1.233852739 1 19.37540555 -6.306235537 24.63085299 1.101730502 1.384326966 0.299309147 0.218183435 492.7975812 270959.7028 0.07518276 0.066305258 4.94E-07 6.306235537 0.282596465 ADHQPLTEASYVNLPTIALCNTDSPLR ddPTM_HeLa_A485_30min_R1 2 ADHQPLTEASYVNLPTIALCNTDSPLR 27 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ; ; 262.76 9.63E-62 64796000 20664.7 29098 36188 25778.5 40483 28232.9 36167 39651 30953 34733 FALSE FALSE TRUE 25261.49122 32500.75798 49575.44711 27186.71418 36452.37038 29711.13099 28439.62499 29926.53008 37164.98318 26074.70231 0.968812258 1.246447902 1.901285258 1.042647155 1.397997566 1.139461944 1.090697974 1.14772279 1.425327228 1 14.67036316 -6.272284698 23.8240711 1.165503148 1.32566393 0.078754443 0.255299592 1081.699954 2376177.188 0.090587308 0.080736527 5.34E-07 6.272284698 0.160160781 ADHQPLTEASYVNLPTIALCNTDSPLR ddPTM_HeLa_A486_30min_R1 1 ADHQPLTEASYVNLPTIALCNTDSPLR 27 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 80.711 0.00076598 21361000 2464.4 4030.3 4069 1937.9 5979.1 4083.1 4956.1 5497 3819.4 3830 FALSE FALSE TRUE 2291.658286 3710.92435 5644.625772 4511.529136 5229.145525 3579.368636 3716.03136 4245.453099 4150.468667 2870.943071 0.798224914 1.292580263 1.966122501 1.571445001 1.821403419 1.246757093 1.294359125 1.478766034 1.445681285 1 11.48730901 ADIDVSGPKVDIDT(ph)PDIDIHGPEGK ddPTM_HeLa_A485_30min_R1 3 ADIDVSGPKVDIDTPDIDIHGPEGK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADIDVSGPKVDIDT(1)PDIDIHGPEGK;ADIDVSGPKVDIDT(1)PDIDIHGPEGK;ADIDVSGPKVDIDT(1)PDIDIHGPEGK ;; 173.03 3.53E-14 896940000 811710 598774 315284 964134 865144 847661 1402739 1405226 570235 1439897 TRUE FALSE FALSE 992272.0891 668795.4107 431920.6717 1016802.199 779007.2257 892043.2192 1103032.353 1060592.12 684675.934 1080957.177 0.91795689 0.618706665 0.399572417 0.940649843 0.72066428 0.825234559 1.020421878 0.981160163 0.633397833 1 20.04387794 -5.805604991 1.424792011 0.895120218 0.664310512 0.204011603 0.174526838 0.625927863 2.651962519 0.068375771 0.091138464 1.56E-06 5.805604991 -0.230809706 ADIDVSGPKVDIDT(ph)PDIDIHGPEGK ddPTM_HeLa_A486_30min_R1 4 ADIDVSGPKVDIDTPDIDIHGPEGK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADIDVSGPKVDIDT(1)PDIDIHGPEGK;ADIDVS(0.009)GPKVDIDT(0.991)PDIDIHGPEGK;ADIDVSGPKVDIDT(1)PDIDIHGPEGK;ADIDVSGPKVDIDT(1)PDIDIHGPEGK ;;; 249.97 1.09E-49 1174660000 1227760 1060380 524541 869602 1331848 1540727 2340471 2044260 968721 2690134 TRUE FALSE FALSE 1141700.364 976351.627 727657.3229 2024477.403 1164795.205 1350647.768 1754860.401 1578826.624 1052690.516 2016506.937 0.566177256 0.484179652 0.360850394 1.003952611 0.57763015 0.669795746 0.870247639 0.782951249 0.522036645 1 20.94342694 -4.551829696 0.110709826 1.116848455 1.24E-19 0.308859324 0.17491727 54.82913817 1.099074179 2.544383661 10.20473771 2.81E-05 4.551829696 -1.116848455 ADIKS(ph)PSLDVTVPEAELNLETPEISVGGK ddPTM_HeLa_A485_30min_R1 1 ADIKSPSLDVTVPEAELNLETPEISVGGK 29 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADIKS(0.648)PS(0.35)LDVT(0.002)VPEAELNLETPEISVGGK 326.15 1.05E-110 163090000 240080 177230 113370 326850 278350 244330 398980 403120 199520 494910 TRUE FALSE FALSE 293484.9677 197955.5068 155310.2807 344704.9879 250636.4967 257122.741 313734.6636 304254.1879 239561.8339 371538.0451 0.789919018 0.532800098 0.418019858 0.92777844 0.674591741 0.692049561 0.844421366 0.818904529 0.644784126 1 18.50315042 -14 0.077726822 1.997309976 0.391184547 0.308450299 0.140243236 317.6002926 1.751415023 54.64505887 5.434706945 1.00E-14 14 -1.60612543 ADIKS(ph)PSLDVTVPEAELNLETPEISVGGK ddPTM_HeLa_A486_30min_R1 2 ADIKSPSLDVTVPEAELNLETPEISVGGK 29 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADIKS(0.827)PS(0.171)LDVT(0.002)VPEAELNLETPEISVGGK;ADIKS(0.854)PS(0.142)LDVT(0.004)VPEAELNLETPEISVGGK ; 161.38 3.31E-14 319430000 268415 243588 110119 165692 252121 313791 396870 399790 177110 392020 TRUE FALSE FALSE 249600.4946 224285.1997 152760.0259 385739.3496 220497.6332 275078.6568 297568.9283 308766.5444 192462.0374 293855.6404 0.849398345 0.763249599 0.51984718 1.312683157 0.750360391 0.936101333 1.012636436 1.050742276 0.654954375 1 18.16474806 -5.232567081 24.99534171 0.954261555 0.716073558 0.280172832 0.182556976 966.7721145 836953.3191 0.047684475 0.082574876 5.85E-06 5.232567081 -0.238187997 ADIPVKS(ph)SPQAAVPYKK ddPTM_HeLa_A485_30min_R1 1 ADIPVKSSPQAAVPYKK 17 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 ADIPVKS(0.594)S(0.406)PQAAVPYKK 107.33 8.57E-05 1265300000 1189600 906710 543050 1460400 1294100 1303800 1873400 2042000 978380 1869900 TRUE FALSE FALSE 1454222.416 1012741.847 743946.7932 1540177.954 1165254.86 1372064.952 1473132.786 1541196.298 1174731.892 1403768.343 1.03594188 0.721445139 0.529964076 1.097173876 0.830090567 0.977415511 1.049413027 1.097899312 0.836841704 1 20.42087344 -5.28105566 24.98017787 0.984221681 0.758349796 0.333324485 0.143625437 888.6291079 1131614.84 0.04062742 0.060356575 5.24E-06 5.28105566 -0.225871885 ADIPVKSS(ph)PQAAVPYKK ddPTM_HeLa_A485_30min_R1 1 ADIPVKSSPQAAVPYKK 17 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 ADIPVKS(0.265)S(0.735)PQAAVPYKK 138.28 1.68E-06 1280900000 964410 679650 447640 1171100 1226800 1058200 1617900 1716200 925780 1739900 TRUE FALSE FALSE 1178939.677 759129.1553 613240.6639 1235074.228 1104655.484 1113605.716 1272222.448 1295299.259 1111575.554 1306174.95 0.90258941 0.581184898 0.469493511 0.945565697 0.84571786 0.852570106 0.97400616 0.991673633 0.851015826 1 20.31691672 -5.282412912 24.89131947 0.918567336 0.644098829 0.541310142 0.114571661 557.2440043 661334.1033 0.03266779 0.048512143 5.22E-06 5.282412912 -0.274468507 ADIPVKSS(ph)PQAAVPYKK ddPTM_HeLa_A486_30min_R1 1 ADIPVKSSPQAAVPYKK 17 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 ADIPVKS(0.023)S(0.977)PQAAVPYKK 154.34 1.26E-08 686690000 1667200 1500000 651310 742280 1587400 1931800 2336400 2105500 1247400 2533200 TRUE FALSE FALSE 1550337.889 1381134.537 903514.6747 1728065.353 1388293.49 1693474.157 1751808.008 1626123.613 1355525.636 1898870.232 0.816452785 0.727345405 0.475816967 0.910049209 0.731115516 0.891832485 0.922552778 0.85636374 0.713859017 1 20.85670988 -5.303410054 24.99983435 0.853299297 0.678618684 0.364739718 0.113095311 536.6462255 319652.2182 0.031645582 0.046938364 4.97E-06 5.303410054 -0.174680613 ADK(ac)DYHFK ddPTM_HeLa_A485_30min_R1 2 ADKDYHFK 8 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; ADK(1)DYHFK;ADK(1)DYHFK 94.297 0.011207 73769000 251140 211090 414770 388450 349190 242530 407730 265370 256720 814060 FALSE TRUE FALSE 307005.2266 235775.1393 568210.683 409670.0399 314423.4175 255228.4958 320615.1547 200287.5914 308241.3492 611129.8237 0.502356807 0.385802051 0.929770829 0.67034863 0.514495293 0.417633841 0.524626916 0.327733296 0.504379491 1 19.22111936 -10.1638783 4.65514113 1.000059924 0.532407421 0.436696339 0.159860266 0.000106847 1.92E-05 0.166345442 0.040339543 6.86E-11 10.1638783 -0.467652503 ADK(ac)DYHFK ddPTM_HeLa_A486_30min_R1 1 ADKDYHFK 8 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ADK(1)DYHFK 102.06 0.0048711 43752000 143140 178120 238600 62464 161150 199730 253360 237930 161330 333490 FALSE TRUE FALSE 133106.6252 164005.1225 330992.3099 145419.3488 140937.0643 175089.3433 189966.6482 183758.533 175314.2143 249981.9333 0.53246498 0.656067902 1.324064925 0.581719434 0.563789 0.700407989 0.75992151 0.735087254 0.701307538 1 17.93146431 -10.52675175 5.678010475 1.000544944 0.734869106 0.12798468 0.21213053 0.001501998 0.000125188 0.210816764 0.051028301 2.97E-11 10.52675175 -0.265675838 ADKDES(ph)T(ph)MINEIT(ph)LAK ddPTM_HeLa_A485_30min_R1 4 ADKDESTMINEITLAK 16 1 Q5THK1-2;Q5THK1-4;Q5THK1;H7BZH1 Q5THK1-2 PRR14L Protein PRR14L 3 0 ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK ;;; 48.823 0.02627 5132170000 3469900 1697060 1773600 2664790 3577180 1271280 1048780 752370 857380 1277660 TRUE FALSE FALSE 4241767.284 1895516.405 2429728.446 2810360.73 3221023.399 1337842.255 824699.5853 567850.0778 1029448.302 959162.8756 4.422363909 1.976219527 2.533176072 2.93001408 3.358161039 1.394801956 0.859811828 0.592026748 1.073277884 1 19.87141629 -6.400955141 3.943187365 0.873072981 2.946241593 0.746469956 0.603544373 0.125187629 3.373341653 0.22131891 0.191415319 3.97E-07 6.400955141 2.073168612 EEET(ph)SIDVAGKPNEVTK ddPTM_HeLa_A486_30min_R1 2 EEETSIDVAGKPNEVTK 17 1 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 EEET(0.5)S(0.5)IDVAGKPNEVTK;EEET(0.559)S(0.441)IDVAGKPNEVTK ; 155.87 2.42E-08 2715700000 1357950 1175220 515767 442438 1038693 1732070 1570270 1220530 1415390 3663440 TRUE FALSE FALSE 1262764.717 1082091.287 715485.7951 1030018.024 908410.4385 1518384.814 1177371.837 942641.963 1538077.145 2746090.779 0.45984085 0.394047894 0.260547029 0.375085205 0.330801314 0.552925936 0.428744689 0.343266861 0.560096977 1 21.38894789 -9.640043751 0.438873667 1.159706966 0.370191901 0.83689146 0.079939363 3.975477503 0.646612744 0.978138244 0.04818236 2.29E-10 9.640043751 -0.789515064 ADKDYHFK ddPTM_HeLa_A485_30min_R1 2 ADKDYHFK 8 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ; ; 74.464 0.03057 78477000 432120 311790 255200 564450 474670 380610 483340 376080 394380 741590 FALSE FALSE TRUE 528243.6032 348251.1283 349609.0998 595284.4742 427410.1881 400538.1511 380070.4605 283845.7903 473528.4485 556725.261 0.94884073 0.625534986 0.627974199 1.069260757 0.767721923 0.719453884 0.682689447 0.509848951 0.850560378 1 19.08660602 -6.00342547 24.95047607 0.720409549 0.806582704 0.013421413 0.171693309 498.1802658 3628692.381 0.053964986 0.059976082 9.92E-07 6.00342547 0.086173155 ADKDYHFK ddPTM_HeLa_A486_30min_R1 3 ADKDYHFK 8 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ;; ;; 96.331 0.0098075 1047101000 4885184 5610580 2831101 2148584.5 6068685 6123532 6271673 6216912 4685147 6394922 FALSE FALSE TRUE 4542757.829 5165977.207 3927379.127 5002013.299 5307493.939 5368072.881 4702434.08 4801456.852 5091259.314 4793591.907 0.947673043 1.07768398 0.819297763 1.043479169 1.107206045 1.11984353 0.980983399 1.001640721 1.062096944 1 22.19267566 -5.473507285 24.99766396 1.048566774 0.956202072 0.274324661 0.071696368 525.5547806 266097.2813 0.020348656 0.030181228 3.36E-06 5.473507285 -0.092364702 ADKDYHFK(ac)VDNDENEHQLSLR ddPTM_HeLa_A485_30min_R1 2 ADKDYHFKVDNDENEHQLSLR 21 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; ADK(0.003)DYHFK(0.997)VDNDENEHQLSLR;ADKDYHFK(1)VDNDENEHQLSLR 276.36 3.02E-64 209930000 176220 190646 246070 191183 286490 225570 401320 407370 197373 358850 FALSE TRUE FALSE 215419.531 212940.3913 337101.5328 201626.8432 257966.0497 237380.4964 315574.7035 307461.8688 236983.9507 269395.2991 0.799641017 0.790438408 1.251326708 0.748442322 0.957574429 0.8811605 1.171418746 1.141303763 0.879688515 1 18.03936515 -6.739955677 24.99751369 1.05987811 0.910615063 0.175977034 0.150777988 410.9324062 478143.0411 0.057356142 0.044384751 1.82E-07 6.739955677 -0.149263046 ADKDYHFKVDNDENEHQLSLR ddPTM_HeLa_A485_30min_R1 4 ADKDYHFKVDNDENEHQLSLR 21 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ;;; ;;; 175.61 1.09E-14 8731540000 2533371 2732902 1730011 2166052 3504370 3467430 4953930 6685890 2387631 3155700 FALSE FALSE TRUE 3096910.639 3052491.116 2370014.061 2284377.936 3155462.618 3648979.273 3895482.386 5046164.994 2866806.641 2369042.066 1.307241726 1.288491732 1.00041029 0.964262293 1.331957192 1.540276268 1.644328077 2.130044488 1.210112172 1 21.17587239 -6.117354195 3.099717014 1.586481133 1.140972817 0.225014925 0.298487054 0.318346308 5.818528879 0.102805866 0.104211783 7.63E-07 6.117354195 -0.445508316 ADKDYHFKVDNDENEHQLSLR ddPTM_HeLa_A486_30min_R1 2 ADKDYHFKVDNDENEHQLSLR 21 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ; ; 211.93 1.54E-27 5841300000 4618270 2936480 2266740 1894580 5402250 4428180 6159540 6013530 2554510 6243110 FALSE FALSE TRUE 4294553.122 2703782.63 3144482.433 4410677.987 4724649.431 3881876.174 4618357.943 4644380.493 2775936.984 4679794.62 0.917679828 0.577756686 0.671927443 0.942493922 1.009584782 0.829497123 0.986871929 0.992432547 0.593174959 1 22.15801379 -5.262337198 24.95165362 0.911689677 0.707984849 0.262014122 0.141753869 96.15223672 2672236.83 0.038289816 0.060721479 5.47E-06 5.262337198 -0.203704828 ADLDVS(ph)GPKVDIDVPDVNIEGPDAK ddPTM_HeLa_A485_30min_R1 2 ADLDVSGPKVDIDVPDVNIEGPDAK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADLDVS(1)GPKVDIDVPDVNIEGPDAK;ADLDVS(1)GPKVDIDVPDVNIEGPDAK ; 246.32 1.10E-49 626930000 426635 269374 169311 841060 467972 394095 713600 683489 306611 1174950 TRUE FALSE FALSE 521538.4839 300874.9461 231946.1845 887004.9781 421379.0645 414729.2048 561133.5304 515862.2511 368145.0153 882056.5884 0.591275538 0.341106172 0.262960662 1.005610059 0.477723391 0.470184351 0.636165001 0.584840313 0.417371198 1 19.75051169 -11.32872942 2.206574498 3.478752285 0.533538232 0.347505321 0.192409902 11811762.54 1416668.536 146125438 0.049039554 4.69E-12 11.32872942 -2.945214053 ADLDVS(ph)GPKVDIDVPDVNIEGPDAK ddPTM_HeLa_A486_30min_R1 5 ADLDVSGPKVDIDVPDVNIEGPDAK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADLDVS(1)GPKVDIDVPDVNIEGPDAK;ADLDVS(1)GPKVDIDVPDVNIEGPDAK;ADLDVS(1)GPKVDIDVPDVNIEGPDAK;ADLDVS(1)GPKVDIDVPDVNIEGPDAK;ADLDVS(1)GPKVDIDVPDVNIEGPDAK ;;;; 278.5 1.35E-75 1675745000 1060967 1035428 390621 1227276 902454 1405500 2167981 1959920 775431 2375328 TRUE FALSE FALSE 986598.6921 953376.9143 541879.9124 2857160.551 789259.8043 1232103.7 1625529.223 1513689.001 842645.9834 1780530.408 0.554103815 0.535445455 0.30433623 1.604668215 0.443272297 0.69198689 0.912946623 0.850133754 0.473255598 1 20.76387564 ADLDVS(ph)GPKVDIDVPDVNIEGPEGK ddPTM_HeLa_A485_30min_R1 1 ADLDVSGPKVDIDVPDVNIEGPEGK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADLDVS(1)GPKVDIDVPDVNIEGPEGK 207.69 6.02E-29 389500000 341900 198530 99151 605270 354430 271030 545690 528370 210260 881670 TRUE FALSE FALSE 417954.4755 221746.3565 135831.0809 638334.3675 319141.7047 285220.7117 429098.8736 398786.429 252457.2534 661885.8949 0.631460012 0.335022031 0.205218274 0.964417541 0.482170276 0.430921272 0.648297353 0.602500268 0.381421111 1 19.336223 -11.27265883 2.223360365 2.934894957 0.520965627 0.344046253 0.198765455 11430073.79 1916501.449 110905515.7 0.052122295 5.34E-12 11.27265883 -2.413929331 ADLES(ph)PQRK ddPTM_HeLa_A485_30min_R1 2 ADLESPQRK 9 1 A0A087X1K6;Q9Y2Y9 A0A087X1K6 KLF13 Krueppel-like factor 13 1 0 ADLES(1)PQRK;ADLES(1)PQRK ; 62.088 0.016141 777310000 1176260 1380160 1337440 1639100 1925490 1511710 1728250 1768460 1464150 2224800 TRUE FALSE FALSE 1437914.979 1541557.706 1832214.712 1728639.883 1733781.455 1590860.798 1358995.269 1334742.412 1757991.475 1670198.304 0.860924703 0.922978848 1.097004294 1.034990802 1.038069222 0.952498152 0.813673002 0.799152058 1.052564519 1 20.67158797 -6.527356412 24.59327558 0.897249412 0.995372252 0.108741681 0.09398258 186.1646277 1022475.658 0.036940629 0.028738492 2.97E-07 6.527356412 0.098122841 ADLES(ph)PQRK ddPTM_HeLa_A486_30min_R1 1 ADLESPQRK 9 1 A0A087X1K6;Q9Y2Y9 A0A087X1K6 KLF13 Krueppel-like factor 13 1 0 ADLES(1)PQRK 79.795 0.0048997 542490000 442700 591530 362100 258910 569910 639460 721340 692850 460180 652600 TRUE FALSE FALSE 411669.0161 544655.0085 502314.8174 602755.5646 498426.5736 560569.9268 540853.1024 535103.1798 500068.7729 489184.7123 0.841541049 1.113393356 1.026840792 1.232163535 1.018892376 1.145926912 1.105621433 1.09386734 1.022249388 1 18.90001979 -4.258233353 24.82744524 1.090630559 0.841540948 0.534192637 0.067784958 200.7240817 1554323.201 0.015666814 0.109096624 5.52E-05 4.258233353 -0.249089611 ADLINNLGTIAK ddPTM_HeLa_A485_30min_R1 4 ADLINNLGTIAK 12 0 P08238;P07900;P07900-2;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 0 ;;; ;;; 301.96 5.74E-63 406992000 398056 440851 380099 466257 581923 453116 586647 617242 438954 608339 FALSE FALSE TRUE 486602.1839 492404.6896 520713.4373 491727.4393 523984.7029 476840.4531 461305.076 465862.4317 527048.0415 456691.2829 1.065494793 1.078200325 1.140186942 1.076717375 1.147349911 1.044119892 1.010102652 1.020081725 1.15405759 1 18.80085973 -6.303947672 23.10260335 1.044704312 1.101052927 0.26365515 0.046705704 285.1792166 154989.0104 0.016253594 0.014334558 4.97E-07 6.303947672 0.056348615 ADLINNLGTIAK ddPTM_HeLa_A486_30min_R1 4 ADLINNLGTIAK 12 0 P08238;P07900;P07900-2;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 0 ;;; ;;; 197.3 2.59E-15 229830000 334927.2 363984 294746 202127.7 578624 362453 416080 435499 316178 381862 FALSE FALSE TRUE 311450.5328 335140.5822 408879.5448 470563.5006 506047.5825 317737.234 311972.3832 336345.3846 343584.5636 286241.2697 1.088069981 1.170832503 1.428443722 1.643940097 1.767905736 1.110032926 1.089893094 1.175041548 1.200332028 1 18.12687217 ADLIPYQDS(ph)PEGPDHSSASSGVPNPPK ddPTM_HeLa_A485_30min_R1 1 ADLIPYQDSPEGPDHSSASSGVPNPPK 27 0 Q8WUA4;H0Y4Q6;H7C318 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 ADLIPYQDS(1)PEGPDHSSASSGVPNPPK 152.23 2.23E-09 115210000 100800 173150 174800 70148 226500 134830 187250 208420 156300 151390 TRUE FALSE FALSE 123222.6122 193398.3863 239465.794 73980.00762 203948.8647 141889.4903 147242.5078 157304.6682 187667.9763 113651.2591 1.084216868 1.701682742 2.107022798 0.650938742 1.794514784 1.248463866 1.295564246 1.384099652 1.651261744 1 16.79425414 -5.234231624 24.99932485 1.324881907 1.638044791 0.141940178 0.377855585 1586.719184 1457924.979 0.099054234 0.171508263 5.83E-06 5.234231624 0.313162884 ADLIPYQDS(ph)PEGPDHSSASSGVPNPPK ddPTM_HeLa_A486_30min_R1 1 ADLIPYQDSPEGPDHSSASSGVPNPPK 27 0 Q8WUA4;H0Y4Q6;H7C318 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 ADLIPYQDS(1)PEGPDHSSASSGVPNPPK 213.08 3.30E-29 188060000 116450 138510 108710 6425.3 160600 103900 114730 104050 139130 58378 TRUE FALSE FALSE 108287.4563 127533.9632 150805.4234 14958.42312 140456.0505 91081.87438 86023.34051 80360.0864 151189.9004 43759.76882 2.474589315 2.914411264 3.44621161 0.341830488 3.209707323 2.081406663 1.965808843 1.836391932 3.454997695 1 15.4173175 -10.94612824 2.650050525 0.005863847 2.381524514 0.183108649 0.893578816 79677048.6 72112623.69 492317412.9 0.213590736 1.13E-11 10.94612824 2.375660667 ADLNQGIGEPQS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 ADLNQGIGEPQSPSR 15 0 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 ADLNQGIGEPQS(0.973)PS(0.027)R;ADLNQGIGEPQS(0.995)PS(0.005)R;ADLNQGIGEPQS(0.935)PS(0.065)R;ADLNQGIGEPQS(0.975)PS(0.025)R ;;; 381.07 1.45E-119 3525020000 1485160 1685290 1773390 1604650 2296670 1493010 1767630 1804260 1739900 2100740 TRUE FALSE FALSE 1815528.718 1882370.005 2429440.758 1692307.966 2068005.471 1571181.695 1389961.41 1361762.406 2089081.971 1577064.179 1.151207885 1.19359125 1.540483127 1.073074887 1.311300769 0.996269978 0.881360079 0.863479384 1.324665158 1 20.58880994 -6.269122708 24.15323131 0.996385178 1.256451281 0.346182848 0.164624595 409.0530505 1285890.227 0.05705206 0.051285355 5.38E-07 6.269122708 0.260066102 ADLNQGIGEPQS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 ADLNQGIGEPQSPSR 15 0 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 ADLNQGIGEPQS(1)PSR;ADLNQGIGEPQS(1)PSR;ADLNQGIGEPQS(1)PSR;ADLNQGIGEPQS(0.971)PS(0.029)R ;;; 433.88 6.40E-172 4256840000 1964400 2418840 1945220 594380 2429850 2026740 2167980 2119710 1818370 1957210 TRUE FALSE FALSE 1826705.704 2227162.309 2698461.279 1383746.678 2125075.556 1776701.425 1625528.473 1637098.306 1975987.776 1467111.877 1.245103208 1.518058946 1.839301639 0.943177341 1.448475463 1.211019728 1.107978539 1.115864667 1.346855551 1 20.48454746 -5.268135733 24.99963711 1.183477185 1.532545035 0.426953547 0.193981169 511.5102665 1909631.887 0.053695084 0.081753241 5.39E-06 5.268135733 0.34906785 ADLNQGIGEPQS(ph)PSRR ddPTM_HeLa_A485_30min_R1 1 ADLNQGIGEPQSPSRR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 ADLNQGIGEPQS(0.917)PS(0.083)RR 89.917 0.00059507 0 47055 53495 54878 64285 66494 67610 81633 83968 50539 78814 TRUE FALSE FALSE 57522.22241 59750.77491 75179.65586 67796.72677 59873.62389 71149.95506 64191.44267 63374.71634 60681.71373 59167.12026 0.972199123 1.00986451 1.27063233 1.145851386 1.011940815 1.202525233 1.084917474 1.071113755 1.025598567 1 15.85250806 -7.691391096 1.873654566 1.001926122 1.104972511 0.139105141 0.086205357 0.690951031 4.528370285 0.083242139 0.024984422 2.04E-08 7.691391096 0.103046389 ADNNTVINGLLGNIVHS(ph)NPMDMPGR ddPTM_HeLa_A485_30min_R1 1 ADNNTVINGLLGNIVHSNPMDMPGR 25 0 Q8TF40-3 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 ADNNTVINGLLGNIVHS(1)NPMDMPGR 125.97 5.31E-06 42664000 43272 58421 49902 41777 68364 61166 85416 101430 43711 54537 TRUE FALSE FALSE 52897.70711 65252.82775 68362.8264 44059.17173 61557.44012 64368.55718 67166.17382 76554.13346 52483.39676 40941.92958 1.29201793 1.593789751 1.669750964 1.076138135 1.503530507 1.572191586 1.640522919 1.869822313 1.281898467 1 15.32129148 -5.984732266 24.99651581 1.53774305 1.421143799 0 0.265323505 939.7915758 1538629.197 0.080773411 0.091559168 1.04E-06 5.984732266 -0.116599251 ADNNTVINGLLGNIVHS(ph)NPMDMPGR ddPTM_HeLa_A486_30min_R1 2 ADNNTVINGLLGNIVHSNPMDMPGR 25 0 Q8TF40-3 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 ADNNTVINGLLGNIVHS(1)NPMDMPGR;ADNNTVINGLLGNIVHS(1)NPMDMPGR ; 176.34 8.93E-15 104644000 29037 30960 30777 11422 32832 25131 32056 32390 21592 32657 TRUE FALSE FALSE 27001.65625 28506.61685 42694.67864 26590.99324 28713.90441 22030.59273 24035.24975 25015.50407 23463.61195 24479.47464 1.103032506 1.164510974 1.7441011 1.086256696 1.172978785 0.899961828 0.981853169 1.021897097 0.95850145 1 14.57928498 -5.79586603 2.15705538 0.981243122 1.318062994 0.407015537 0.174392572 0.30999621 2.962934389 0.060331419 0.075798627 1.60E-06 5.79586603 0.336819872 ADNPS(ph)PNLMPASAQAQNAQR ddPTM_HeLa_A486_30min_R1 1 ADNPSPNLMPASAQAQNAQR 20 0 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 ADNPS(1)PNLMPASAQAQNAQR 148.01 1.72E-09 347410000 128880 102330 83879 52412 128430 93650 150890 127960 104390 146160 TRUE FALSE FALSE 119846.1775 94220.99812 116359.1952 122017.7848 112321.1118 82096.41516 113135.726 98826.30135 113438.6093 109560.5847 1.093880412 0.859989917 1.062053434 1.113701475 1.025196353 0.749324362 1.032631638 0.902024224 1.035396166 1 16.74136934 -6.059110285 24.99929949 0.937072553 1.028115208 0.157121075 0.10015223 482.7139973 204151.248 0.032627195 0.03262727 8.73E-07 6.059110285 0.091042655 ADPGHWWASFFFGK ddPTM_HeLa_A486_30min_R1 2 ADPGHWWASFFFGK 14 0 X6R7I6;Q9H3Y8-2;Q9H3Y8 X6R7I6 PPDPF Pancreatic progenitor cell differentiation and proliferation factor 0 0 ; ; 135.58 1.73E-05 11322000 18966.3 25742.5 22073.8 11662.8 32542.3 28450.4 34634.9 33442.9 20318.5 27170.1 FALSE FALSE TRUE 17636.86031 23702.57055 30621.36652 27151.58781 28460.54129 24940.47891 25968.88169 25828.68172 22079.72394 20366.53011 0.865972761 1.163800138 1.503514165 1.333147456 1.397417289 1.224581643 1.27507639 1.268192548 1.084118101 1 14.31391259 -7.876314916 3.241626545 1.002317727 1.267272349 0.226583284 0.158466759 0.340956323 6.725892093 0.158347067 0.042648642 1.33E-08 7.876314916 0.264954622 ADQEQQDPLEYLQS(ph)DEEDDEKR ddPTM_HeLa_A486_30min_R1 1 ADQEQQDPLEYLQSDEEDDEKR 22 1 Q7RTV3 Q7RTV3 ZNF367 Zinc finger protein 367 1 0 ADQEQQDPLEYLQS(1)DEEDDEKR 193.9 2.24E-20 222820000 35280 46274 12604 26579 38059 41343 57195 59141 29771 77887 TRUE FALSE FALSE 32807.05419 42607.07971 17484.60635 61877.25523 33285.28533 36242.521 42884.20605 45675.88534 32351.57425 58383.58824 0.56192254 0.729778367 0.299478105 1.059839881 0.570113731 0.620765563 0.734525015 0.78234118 0.554121033 1 15.83327526 -14 0.213387615 2.617018943 0.617816301 0.23257724 0.186142176 221.0852652 2.207770406 153.6050418 0.368291571 1.00E-14 14 -1.999202642 ADQEQQDPLEYLQS(ph)DEEDDEKRGAQR ddPTM_HeLa_A485_30min_R1 1 ADQEQQDPLEYLQSDEEDDEKRGAQR 26 2 Q7RTV3 Q7RTV3 ZNF367 Zinc finger protein 367 1 0 ADQEQQDPLEYLQS(1)DEEDDEKRGAQR 260.68 1.75E-62 114010000 31111 35213 31305 54543 73031 49889 92230 98345 44145 88233 TRUE FALSE FALSE 38031.53462 39330.85404 42886.02221 57522.54598 65759.77721 52501.1109 72524.30705 74225.73455 53004.49658 66238.13691 0.574163713 0.593779594 0.647452121 0.868420349 0.992778183 0.792611528 1.094902581 1.120589105 0.800211163 1 16.01537447 -5.303218704 1.810386456 0.974716086 0.575633179 0.723169077 0.100510712 0.189325293 1.20953505 0.032198733 0.063901157 4.97E-06 5.303218704 -0.399082906 ADQEQQDPLEYLQS(ph)DEEDDEKRGAQR ddPTM_HeLa_A486_30min_R1 1 ADQEQQDPLEYLQSDEEDDEKRGAQR 26 2 Q7RTV3 Q7RTV3 ZNF367 Zinc finger protein 367 1 0 ADQEQQDPLEYLQS(1)DEEDDEKRGAQR 215.98 2.46E-38 167810000 121000 123440 82578 100470 159780 168840 232900 215930 94115 236860 TRUE FALSE FALSE 112518.5248 113658.1648 114554.4131 233899.2375 139738.9025 148010.2374 174625.9566 166767.4527 102272.964 177548.7143 0.633733256 0.640152002 0.645199902 1.317380632 0.787045421 0.833631705 0.983538277 0.939277163 0.576027624 1 17.43785539 -5.063846476 24.99988543 0.916029957 0.638368522 0.344927028 0.176715555 226.0943598 88529.57709 0.047149597 0.081665608 8.63E-06 5.063846476 -0.277661436 ADQLYK(ac)QK ddPTM_HeLa_A486_30min_R1 2 ADQLYKQK 8 1 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU2;Q5JPU0;Q5JPT9;Q5JPU1 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 0 1 ; ADQLYK(1)QK;ADQLYK(1)QK 161.37 0.00049469 102264000 76014 121030 88546 44575 150679 123522 137118 149748 126911 127256 FALSE TRUE FALSE 70685.81114 111439.142 122833.3825 103772.8527 131779.4348 108283.1115 102809.6261 115653.6494 137911.7477 95390.2693 0.741016999 1.168244338 1.287693005 1.087876714 1.381476704 1.135158883 1.077778969 1.212426071 1.44576327 1 16.54155448 -4.265815683 4.464462354 1.207676652 0.710916341 0.52359995 0.131534685 0.146506465 7.376176102 0.031757164 0.228627937 5.42E-05 4.265815683 -0.496760311 ADQS(ph)FTSPPPRDFLLDIAR ddPTM_HeLa_A485_30min_R1 1 ADQSFTSPPPRDFLLDIAR 19 1 D6RIE8;Q16594;D6RHW1;D6RIY1;D6RGK3;D6RIV9;Q9HBM6 D6RIE8 TAF9;TAF9B Transcription initiation factor TFIID subunit 9;Transcription initiation factor TFIID subunit 9B 1 0 ADQS(0.333)FT(0.333)S(0.333)PPPRDFLLDIAR 43.349 0.030898 40435000 36569 42147 42288 38481 56579 51579 63847 61521 41803 55367 TRUE FALSE FALSE 44703.64789 47075.72502 57932.09095 40583.11959 50945.7961 54279.59668 50205.56687 46432.87829 50192.47866 41565.02585 1.075511129 1.132580193 1.393770117 0.976376623 1.225689027 1.305895896 1.207880083 1.117114144 1.207565198 1 15.34308249 -10.15164112 6.997806677 0.999999785 1.184895686 0.194695388 0.111244008 3.64E-07 4.41E-08 0.105623225 0.025617365 7.05E-11 10.15164112 0.1848959 ADRDQS(ph)PFSK ddPTM_HeLa_A485_30min_R1 4 ADRDQSPFSK 10 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ADRDQS(1)PFSK;ADRDQS(1)PFSK;ADRDQS(0.999)PFS(0.001)K;ADRDQS(0.94)PFS(0.06)K ;;; 166.86 1.89E-07 12579040000 8045720 7327140 6610770 10489200 10394700 8840220 12562100 11629180 8226030 13746200 TRUE FALSE FALSE 9835462.657 8183985.285 9056368.92 11062198.44 9359767.17 9303080.25 9878104.712 8777105.371 9876918.767 10319525.32 0.953092546 0.793058308 0.877595494 1.071967759 0.906995901 0.90150273 0.957224718 0.850533828 0.957109795 1 23.29887328 ADRDQS(ph)PFSK ddPTM_HeLa_A486_30min_R1 6 ADRDQSPFSK 10 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ADRDQS(1)PFSK;ADRDQS(1)PFSK;ADRDQS(0.999)PFS(0.001)K;ADRDQS(0.987)PFS(0.013)K;ADRDQS(1)PFSK;ADRDQS(1)PFSK ;;;;; 129.17 4.28E-05 19877930000 11952700 12684850 7368100 5155150 13054680 13300690 16009560 15717030 10034480 15409220 TRUE FALSE FALSE 11114877.45 11679656.29 10221225.64 12001449.73 11417240.3 11659786.1 12003798.76 12138605.37 10904276.81 11550651.01 0.962272814 1.011168658 0.884904724 1.039027992 0.98844994 1.009448393 1.039231359 1.05090227 0.944040019 1 23.46147083 -5.308609799 24.99999796 1.012555495 0.958620377 0.290518301 0.040662372 509.755972 270166.2441 0.011120887 0.016495015 4.91E-06 5.308609799 -0.053935117 ADRDQSPFS(ph)K ddPTM_HeLa_A485_30min_R1 1 ADRDQSPFSK 10 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ADRDQS(0.085)PFS(0.915)K 140.45 0.00017556 1018000000 1309500 999790 903010 1788900 1611700 1190100 1658500 1385700 1196100 2539400 TRUE FALSE FALSE 1600793.757 1116706.743 1237070.976 1886623.077 1451233.489 1252411.796 1304147.926 1045854.902 1436146.299 1906374.314 0.839705899 0.585775173 0.648912948 0.989639371 0.76125317 0.656960066 0.684098562 0.548609418 0.753339094 1 20.86239999 -8.032492095 23.76850272 1.000000004 0.711670368 0.331457135 0.120933332 3013.957984 2204757.406 0.121894937 0.031473137 9.28E-09 8.032492095 -0.288329636 ADRDQSPFS(ph)K ddPTM_HeLa_A486_30min_R1 1 ADRDQSPFSK 10 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ADRDQS(0.237)PFS(0.763)K 140.57 0.00016517 1873500000 1004500 1420400 821670 502210 1297800 1450000 1650500 1626800 1078000 1408100 TRUE FALSE FALSE 934089.7372 1307842.331 1139842.629 1169170.26 1135017.822 1271113.743 1237527.443 1256413.153 1171441.908 1055502.595 0.884971521 1.239070692 1.079905094 1.10769056 1.075333995 1.204273442 1.172453245 1.190345868 1.109842755 1 20.00949869 -6.231876239 24.409746 1.149596584 1.08819899 0.067707292 0.096855506 1350.869613 1115388.253 0.030200269 0.030196026 5.86E-07 6.231876239 -0.061397594 ADREVQAEQPS(ph)SSSPR ddPTM_HeLa_A486_30min_R1 1 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ADREVQAEQPS(0.25)S(0.25)S(0.25)S(0.25)PR 51.819 0.022392 780560000 199530 226990 246850 124930 433660 212760 319470 354860 209050 276440 TRUE FALSE FALSE 185543.9774 209002.4857 342436.9309 290843.3536 379266.3191 186511.8344 239535.227 274066.1245 227170.6223 207217.6247 0.895406352 1.008613462 1.652547323 1.40356475 1.830280217 0.900077079 1.155959718 1.322600454 1.096290061 1 17.66078719 ADREVQAEQPSSS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ADREVQAEQPS(0.01)S(0.064)S(0.463)S(0.463)PR 85.974 0.00062016 857470000 162810 279610 272980 145450 395800 283260 345200 507150 283640 192920 TRUE FALSE FALSE 199026.5228 312307.9572 373966.6616 153395.5652 356392.7623 298091.0556 271445.2 382770.6673 340563.9463 144828.5944 1.374221186 2.156397074 2.582132783 1.059152482 2.460790037 2.058233436 1.874251428 2.642921923 2.351496593 1 17.14398695 ADREVQAEQPSSSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ADREVQAEQPSS(0.002)S(0.19)S(0.808)PR 135.49 4.12E-06 873400000 192790 344770 389260 201660 595050 386310 529610 665430 346440 313780 TRUE FALSE FALSE 235675.4704 385087.8524 533263.4725 212676.1752 535804.7327 406536.5943 416454.497 502232.2491 415967.3303 235560.4207 1.000488408 1.634773156 2.263807608 0.902851908 2.274595754 1.725827255 1.76793069 2.132074003 1.765862572 1 17.84573763 -4.291798488 4.243279411 1.770564759 0.96005676 0.186461195 0.445088132 0.28293225 11.0986461 0.104041967 0.646524332 5.11E-05 4.291798488 -0.810507999 ADREVQAEQPSSSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ADREVQAEQPS(0.015)S(0.077)S(0.401)S(0.506)PR 95.48 0.00036909 669110000 386160 330300 426180 154810 724660 285290 463920 492770 316480 293370 TRUE FALSE FALSE 359092.1781 304125.8251 591208.3095 360405.5037 633766.3856 250093.8204 347842.3092 380577.0281 343912.7412 219908.2425 1.63291823 1.382966921 2.688431788 1.638890383 2.881958304 1.137264423 1.581761126 1.730617387 1.563892 1 17.74654215 ADRGEAERGS(ph)GGS(ph)S(ph)GDELREDDEPVK ddPTM_HeLa_A485_30min_R1 2 ADRGEAERGSGGSSGDELREDDEPVK 26 3 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 3 0 ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK;ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK ; 125.68 6.73E-06 5112400000 927350 774950 784220 1415580 1399740 1174230 1687660 1584260 965490 1922910 TRUE FALSE FALSE 1133635.808 865573.6613 1074335.612 1492909.551 1260376.971 1235710.867 1327077.654 1195717.751 1159254.987 1443563.926 0.785303503 0.59960882 0.74422448 1.034183194 0.873100906 0.856013956 0.919306468 0.828309526 0.803050677 1 20.46120357 -5.018474132 22.46498909 0.892193623 0.687321237 0.553405807 0.079695354 135.1845632 164389.8701 0.020952956 0.037303983 9.58E-06 5.018474132 -0.204872386 ADRGEAERGS(ph)GGS(ph)S(ph)GDELREDDEPVK ddPTM_HeLa_A486_30min_R1 3 ADRGEAERGSGGSSGDELREDDEPVK 26 3 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 3 0 ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK;ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK;ADRGEAERGS(1)GGS(1)S(1)GDELREDDEPVK ;; 148.94 3.35E-09 5985370000 3028540 3177330 1885623 1786249 3730280 3699610 4778810 4786210 2448650 4436760 TRUE FALSE FALSE 2816254.985 2925546.799 2615786.724 4158477.944 3262393.499 3243189.733 3583101.193 3696494.465 2660900.954 3325766.418 0.846798792 0.879660936 0.78652148 1.250381843 0.980944868 0.97517063 1.077376082 1.111471463 0.800086542 1 21.66525542 -5.214759243 24.99988601 1.03046934 0.841860393 0.38522889 0.110070017 432.1506538 231440.805 0.02900937 0.050245561 6.10E-06 5.214759243 -0.188608947 ADRLEGDRS(ph)EGS(ph)GQENENEDEE ddPTM_HeLa_A486_30min_R1 1 ADRLEGDRSEGSGQENENEDEE 22 2 Q58WW2;Q58WW2-2;Q58WW2-4;Q58WW2-3 Q58WW2 DCAF6 DDB1- and CUL4-associated factor 6 2 0 ADRLEGDRS(1)EGS(1)GQENENEDEE 73.072 0.00020469 0 51030 74775 77214 20651 113650 71218 91858 79503 62589 51051 TRUE FALSE FALSE 47453.06052 68849.55667 107113.3287 48076.57164 99394.95726 62431.84725 68874.15683 61401.90244 68014.26491 38267.49731 1.24003564 1.799165389 2.799068039 1.256329131 2.597372816 1.631458852 1.799808236 1.604544502 1.777337681 1 15.22383193 -8.609257206 0.588935297 0.970520716 1.921953113 0.22286116 0.476831602 3.134115978 1.761760047 0.700704544 0.201155109 2.46E-09 8.609257206 0.951432397 ADRPSSLPLDFNDEFS(ph)DLDGVVQQR ddPTM_HeLa_A485_30min_R1 1 ADRPSSLPLDFNDEFSDLDGVVQQR 25 1 D6REP5;B7Z4W8;E9PD09;Q96HH9-5;Q96HH9-4;Q96HH9;Q96HH9-2;Q96HH9-3 D6REP5 GRAMD3 GRAM domain-containing protein 3 1 0 ADRPSSLPLDFNDEFS(1)DLDGVVQQR 103.42 0.00034074 39167000 21694 22982 16384 20549 25333 21134 28936 31403 19959 52243 TRUE FALSE FALSE 26519.75546 25669.54498 22445.1234 21671.53984 22810.75757 22240.54356 22753.58721 23701.36501 23964.58823 39219.78156 0.67618315 0.654505047 0.572290882 0.552566561 0.58161358 0.567074641 0.580155888 0.604321699 0.61103319 1 15.25929388 -8.781889535 1.722034635 1.000059019 0.595720558 0.913443161 0.036954025 4.258749717 8.942252597 0.039606574 0.011104329 1.65E-09 8.781889535 -0.404338461 ADRPSSLPLDFNDEFS(ph)DLDGVVQQR ddPTM_HeLa_A486_30min_R1 1 ADRPSSLPLDFNDEFSDLDGVVQQR 25 1 D6REP5;B7Z4W8;E9PD09;Q96HH9-5;Q96HH9-4;Q96HH9;Q96HH9-2;Q96HH9-3 D6REP5 GRAMD3 GRAM domain-containing protein 3 1 0 ADRPSSLPLDFNDEFS(1)DLDGVVQQR 82.773 0.0026265 34771000 25087 23742 24276 9069.8 29536 23312 27478 22939 26312 23599 TRUE FALSE FALSE 23328.53085 21860.59745 33676.31733 21114.95276 25831.31947 20436.00246 20602.71377 17716.29045 28592.74535 17689.6568 1.31876673 1.235784148 1.903729265 1.193632698 1.460249894 1.155251495 1.16467572 1.001505606 1.616353877 1 14.11061844 -6.261901525 24.98755767 1.186221333 1.4260908 0.190346625 0.242138976 72.48644473 3919190.014 0.080814037 0.075627118 5.47E-07 6.261901525 0.239869468 ADS(ph)DSEDKGEESKPK ddPTM_HeLa_A485_30min_R1 3 ADSDSEDKGEESKPK 15 2 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 0 ADS(0.936)DS(0.063)EDKGEES(0.001)KPK;ADS(0.582)DS(0.414)EDKGEES(0.004)KPK;ADS(0.991)DS(0.009)EDKGEESKPK ;; 153.06 2.70E-08 757500000 529990 203331 111686 1938120 421712 356138 990540 675720 240655 2420910 TRUE FALSE FALSE 647884.4471 227108.7917 153003.299 2043994.588 379724.8726 374784.835 778903.037 509998.6105 288952.2511 1817421.691 0.356485482 0.124962078 0.084187011 1.124667213 0.20893603 0.206217873 0.428575845 0.280616553 0.158990207 1 20.79346177 -10.17163282 4.507012036 1.000121918 0.334678749 0.333474588 0.283937278 260700463.2 78.38892669 332518.8182 0.069471719 6.74E-11 10.17163282 -0.665443169 ADS(ph)DSEDKGEESKPK ddPTM_HeLa_A486_30min_R1 3 ADSDSEDKGEESKPK 15 2 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 0 ADS(0.834)DS(0.166)EDKGEESKPK;ADS(0.675)DS(0.304)EDKGEES(0.02)KPK;ADS(0.894)DS(0.106)EDKGEESKPK ;; 117.78 8.04E-05 1536280000 505200 472000 106046 1097970 352935 1032240 1612710 1294400 364187 2215790 TRUE FALSE FALSE 469788.0889 434597.001 147109.8512 2556129.648 308666.6013 904892.7238 1209192.9 999693.3766 395755.0224 1660941.762 0.282844408 0.261656977 0.088570144 1.538964043 0.185838305 0.544807015 0.728016435 0.601883461 0.238271462 1 20.66357006 ADS(ph)FSEGDDLSQGHLAEPCFLR ddPTM_HeLa_A485_30min_R1 1 ADSFSEGDDLSQGHLAEPCFLR 22 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 ADS(0.949)FS(0.051)EGDDLSQGHLAEPCFLR 81.974 0.00010986 0 34747 36580 32519 34106 45269 38657 41696 34444 28045 48126 TRUE FALSE FALSE 42476.35027 40857.7128 44549.13133 35969.12442 40761.85941 40681.02074 32787.30898 25996.55499 33673.37426 36129.07389 1.17568334 1.130881819 1.233054893 0.995572832 1.128228737 1.125991241 0.907504828 0.719546675 0.932029821 1 15.14087265 -6.802072042 4.459767089 0.86016353 1.130954293 0.6470572 0.086974805 0.1177004 5.112824424 0.036158869 0.02468137 1.58E-07 6.802072042 0.270790762 ADS(ph)FSEGDDLSQGHLAEPCFLR ddPTM_HeLa_A486_30min_R1 1 ADSFSEGDDLSQGHLAEPCFLR 22 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 ADS(0.995)FS(0.005)EGDDLSQGHLAEPCFLR 174.86 1.58E-14 79305000 56638 61787 44956 19293 55788 74504 70109 62237 61439 71806 TRUE FALSE FALSE 52667.96868 56890.7731 62364.16716 44915.07901 48790.54884 65312.45398 52566.98666 48066.99372 66764.58199 53825.31022 0.978498191 1.056952071 1.158640181 0.834460198 0.90646108 1.213415282 0.976622084 0.893018424 1.240393817 1 15.71599711 ADS(ph)LLAVVK ddPTM_HeLa_A485_30min_R1 4 ADSLLAVVK 9 0 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 ADS(1)LLAVVK;ADS(1)LLAVVK;ADS(1)LLAVVK;ADS(1)LLAVVK ;;; 141.88 0.0001201 282653000 844781 621025 484361 1223960 967230 724425 1136650 936497 684762 1703420 TRUE FALSE FALSE 1032699.619 693648.4716 663546.2898 1290821.836 870929.185 762354.7728 893795.4419 706819.6424 822187.4524 1278788.743 0.807560768 0.542426163 0.518886558 1.009409758 0.681057907 0.596153803 0.698939091 0.552725887 0.64294236 1 20.28634652 -10.34268462 3.032251732 1.003355675 0.669114882 0.332218049 0.139346075 31312949.8 39819507.3 937439.1663 0.03752125 4.54E-11 10.34268462 -0.334240793 ADS(ph)LLAVVK ddPTM_HeLa_A486_30min_R1 3 ADSLLAVVK 9 0 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 ADS(1)LLAVVK;ADS(1)LLAVVK;ADS(1)LLAVVK ;; 162.38 1.23E-05 350243000 551260 602690 336030 311208 533370 656780 864980 776590 492819 889090 TRUE FALSE FALSE 512619.5207 554930.6494 466149.8152 724507.9516 466469.7611 575753.1612 648552.8552 599777.4098 535536.9477 666456.077 0.769172251 0.832658998 0.699445667 1.087105327 0.699925737 0.863902635 0.973136682 0.899950395 0.803559253 1 19.34615027 -1.000000009 0.058120442 1.179411633 0.215953958 0.186319572 0.110141169 640.107783 2.791439936 9.650466538 52.70515439 0.099999998 1.000000009 -0.963457675 ADS(ph)PAGPESSRR ddPTM_HeLa_A485_30min_R1 2 ADSPAGPESSRR 12 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 ADS(1)PAGPESSRR;ADS(1)PAGPESSRR ; 103.39 0.00041622 325180000 336660 440150 377980 317870 534720 434110 483240 579730 365690 520220 TRUE FALSE FALSE 411548.8555 491621.7137 517810.5311 335234.4332 481481.3993 456839.3283 379991.8263 437550.3085 439080.6287 390538.7279 1.053797808 1.258829608 1.32588779 0.85838973 1.232864668 1.169767031 0.972993967 1.120376232 1.124294717 1 18.5751061 -6.396182922 0.108101328 0.907849398 1.324076005 0.095864139 0.129346785 42.47209402 2.150173548 2.968300354 4.858935561 4.02E-07 6.396182922 0.416226607 ADS(ph)PAGPESSRR ddPTM_HeLa_A486_30min_R1 2 ADSPAGPESSRR 12 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 ADS(1)PAGPESSRR;ADS(0.998)PAGPES(0.001)S(0.001)RR ; 82.663 0.0027003 704380000 448090 491950 376100 189442 603680 489550 567290 590870 371390 588930 TRUE FALSE FALSE 416681.2049 452966.0903 521735.9923 441030.5499 527960.8253 429154.2984 425348.0418 456341.7996 403582.3842 441458.0947 0.943874877 1.02606815 1.181847153 0.999031517 1.195947773 0.972129186 0.963507175 1.033714876 0.914203158 1 18.75191697 ADS(ph)PHVSGSEADVASLAPVDSSFSLLSVSHALYDSR ddPTM_HeLa_A486_30min_R1 1 ADSPHVSGSEADVASLAPVDSSFSLLSVSHALYDSR 36 0 A0A499FJD3;A0A3B3ISA1;Q96S15 A0A499FJD3 WDR24 WD repeat-containing protein 24 1 0 ADS(0.932)PHVS(0.034)GS(0.034)EADVASLAPVDSSFSLLSVSHALYDSR 90.372 5.27E-05 19515000 8607.5 11609 8401.2 2505.5 12926 8285.5 6681.9 10219 11322 3321.3 TRUE FALSE FALSE 8004.158699 10689.06056 11654.36963 5832.930621 11304.70055 7263.319251 5010.017946 7892.356779 12303.40008 2489.624862 3.215005932 4.293442247 4.681174987 2.342895394 4.540724477 2.917435218 2.012358578 3.170098797 4.94186906 1 11.28171266 -6.360172475 10.62764771 2.892096487 3.807313038 0.164652803 1.125446115 1.114249102 114.2064822 0.391286787 0.344943648 4.36E-07 6.360172475 0.915216551 ADS(ph)PVHMEQQSR ddPTM_HeLa_A486_30min_R1 1 ADSPVHMEQQSR 12 0 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 ADS(1)PVHMEQQSR 112.34 0.00026431 1073600000 225510 277540 224930 77909 263750 281690 281560 264140 246480 261330 TRUE FALSE FALSE 209702.9135 255546.7196 312028.9198 181376.0893 230668.0156 246937.9518 211110.71 204001.0881 267845.0849 195891.267 1.070506699 1.304533497 1.592867944 0.925901864 1.177530878 1.260586832 1.07769332 1.041399605 1.367315087 1 17.57969356 -5.2744412 24.998599 1.129520573 1.32082582 0.230789416 0.167824073 1172.183962 2253755.525 0.047036193 0.07025515 5.32E-06 5.2744412 0.191305246 ADS(ph)PVNGLPK ddPTM_HeLa_A485_30min_R1 4 ADSPVNGLPK 10 0 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 ADS(1)PVNGLPK;ADS(1)PVNGLPK;ADS(1)PVNGLPK;ADS(1)PVNGLPK ;;; 174.29 1.41E-07 3609580000 5260080 4009860 3079060 8194700 6496300 4995140 8117700 7514300 4261600 10919100 TRUE FALSE FALSE 6430166.649 4478778.246 4218132.424 8642355.711 5849505.562 5256677.806 6383287.079 5671406.143 5116864.03 8197169.321 0.784437456 0.546381082 0.51458403 1.054309771 0.713600675 0.641279642 0.778718461 0.691873734 0.624223293 1 22.96669437 -11.0553611 2.479242568 1.403979675 0.705557996 0.274798461 0.143530331 34931262.47 12344803.85 79916669.43 0.038261546 8.80E-12 11.0553611 -0.69842168 ADS(ph)PVNGLPK ddPTM_HeLa_A486_30min_R1 4 ADSPVNGLPK 10 0 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 ADS(1)PVNGLPK;ADS(1)PVNGLPK;ADS(1)PVNGLPK;ADS(1)PVNGLPK ;;; 169.98 2.86E-07 3933300000 6556110 6976900 3388370 3419340 6479900 8277200 10194700 9081800 5386500 9760200 TRUE FALSE FALSE 6096560.545 6424025.035 4700437.608 7960396.324 5667130.519 7256043.22 7643878.231 7014072.394 5853406.157 7316182.392 0.833298053 0.878056983 0.642471354 1.08805329 0.774602138 0.991779979 1.044790551 0.958706607 0.800062908 1 22.80265961 -5.26395051 24.99965237 0.947661066 0.793953621 0.330538918 0.10828427 276.1215165 2748945.165 0.029647507 0.046399598 5.45E-06 5.26395051 -0.153707445 ADS(ph)RESLKPAAK ddPTM_HeLa_A485_30min_R1 2 ADSRESLKPAAK 12 2 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ADS(0.962)RES(0.038)LKPAAK;ADS(0.978)RES(0.022)LKPAAK ; 120.63 8.24E-05 1396590000 848450 466870 471290 1918180 1643850 979260 1676530 1310260 1038700 3006000 TRUE FALSE FALSE 1037184.775 521466.3853 645639.783 2022965.316 1480182.522 1030532.539 1318325.67 988916.6806 1247157.562 2256659.521 0.459610662 0.231078894 0.286104207 0.896442417 0.655917522 0.456662837 0.584193432 0.438221482 0.552656504 1 21.10575733 -14 0.172415517 2.867996481 0.398392267 0.424769498 0.175472574 146.9749258 1.392990477 94.58960028 0.676874134 1.00E-14 14 -2.469604214 ADS(ph)RESLKPAAK ddPTM_HeLa_A486_30min_R1 4 ADSRESLKPAAK 12 2 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ADS(0.996)RES(0.004)LKPAAK;ADS(0.879)RES(0.121)LKPAAK;ADS(1)RESLKPAAK;ADS(0.999)RES(0.001)LKPAAK ;;; 151.9 4.75E-08 2487420000 1469670 1573360 934880 1214990 2192110 2710320 3284650 3448670 1555580 2146040 TRUE FALSE FALSE 1366653.722 1448681.224 1296890.573 2828558.122 1917155.123 2375948.275 2462795.829 2663483.125 1690418.927 1608657.616 0.84956159 0.900552864 0.806194283 1.758334461 1.191773255 1.476975742 1.530963335 1.655717848 1.050825801 1 20.61742587 -5.240506945 24.8942915 1.4103834 0.856947817 0.513339406 0.234574415 567.7326612 675185.8053 0.060087114 0.103933254 5.75E-06 5.240506945 -0.553435584 ADS(ph)RESLKPAAKPLPSK ddPTM_HeLa_A486_30min_R1 4 ADSRESLKPAAKPLPSK 17 3 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ADS(0.997)RES(0.003)LKPAAKPLPSK;ADS(0.977)RES(0.023)LKPAAKPLPSK;ADS(0.84)RES(0.16)LKPAAKPLPSK;ADS(0.678)RES(0.322)LKPAAKPLPSK ;;; 117.64 0.00045928 22248180000 1428870 1193430 695030 1048820 2038280 1980960 2713720 3019550 1090570 2155140 TRUE FALSE FALSE 1328713.592 1098858.26 964164.2295 2441705.964 1782619.916 1736569.296 2034718.553 2332064.381 1185101.486 1615478.916 0.822488971 0.680205882 0.59682873 1.51144403 1.103462198 1.074956336 1.259514149 1.443574631 0.733591428 1 20.62353049 -5.242962943 24.91878703 1.17754733 0.697877619 0.491633859 0.214397011 627.2097165 845903.4402 0.056157041 0.097034974 5.72E-06 5.242962943 -0.479669711 ADSDS(ph)EDKGEESKPK ddPTM_HeLa_A486_30min_R1 1 ADSDSEDKGEESKPK 15 2 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 0 ADS(0.279)DS(0.719)EDKGEES(0.002)KPK 112.82 0.00013686 214490000 124300 102100 24029 234120 80706 213430 361190 274160 69692 490300 TRUE FALSE FALSE 115587.2119 94009.22416 33333.67232 545043.1918 70583.10093 187099.1766 270816.4417 211739.7529 75732.95867 367525.6887 0.314501042 0.255789533 0.09069753 1.483007062 0.192049435 0.509077821 0.73686398 0.576122321 0.206061674 1 18.48748557 -14 0.068881337 2.281927828 2.83E-09 0.120179525 0.387632082 789.5479625 3.914252834 174.1032097 22.36026167 1.00E-14 14 -2.281927826 ADSEGSNSGGT(ph)WPK ddPTM_HeLa_A486_30min_R1 1 ADSEGSNSGGTWPK 14 0 Q8TDM6-4;Q8TDM6;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 ADSEGSNS(0.002)GGT(0.998)WPK 130.21 0.00011886 0 112890 124940 83158 61192 116520 151390 168460 146070 99787 176190 TRUE FALSE FALSE 104976.994 115039.2994 115359.0046 142458.0685 101904.9751 132713.041 126309.5262 112813.0497 108436.6175 132070.8772 0.794853462 0.871042139 0.873462849 1.078648613 0.771593081 1.004862267 0.956376825 0.854185662 0.821048666 1 17.01095285 -4.46639715 1.982985919 0.919978988 0.787025867 0.165767886 0.088290119 0.931427837 5.393465312 0.023636589 0.193777757 3.42E-05 4.46639715 -0.132953121 ADSEPES(ph)PLNASYVYK ddPTM_HeLa_A486_30min_R1 1 ADSEPESPLNASYVYK 16 0 Q5T1V6-2;Q5T1V6 Q5T1V6-2 DDX59 Probable ATP-dependent RNA helicase DDX59 1 0 ADSEPES(1)PLNASYVYK 217.35 6.68E-25 0 65888 76418 55149 26344 73518 67972 79513 83887 71688 69341 TRUE FALSE FALSE 61269.59145 70362.35937 76504.16974 61330.16335 64296.68691 59586.30573 59618.0064 64787.76134 77901.97356 51977.56227 1.178770007 1.353706413 1.471869137 1.179935354 1.237008511 1.146385154 1.146995046 1.246456327 1.498761584 1 15.66560135 -5.302073103 24.98501937 1.214311279 1.336674533 0.155271842 0.13498831 955.965642 587805.7045 0.038092259 0.056500651 4.99E-06 5.302073103 0.122363254 ADSEQPSK(ac)RPR ddPTM_HeLa_A486_30min_R1 1 ADSEQPSKRPR 11 2 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3;A0A2R8YCS7;A0A2R8Y7R5;A0A2R8Y755;A0A2R8Y586;A0A2R8YF51;A0A2R8Y5D2 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 0 1 ADSEQPSK(1)RPR 109.24 0.015289 7410400 6954.5 10545 11590 2752 14207 8822.7 10799 11557 8487.1 11809 FALSE TRUE FALSE 6467.025463 9709.375796 16077.95839 6406.795078 12425.02558 7734.244977 8096.97598 8925.723388 9222.768661 8851.949536 0.730576404 1.096862985 1.816318352 0.72377221 1.403648488 0.873733514 0.914711042 1.008334192 1.041891238 1 13.11177951 -6.295018012 24.9580824 0.964940949 1.163916183 0.088627006 0.298157971 1612.094067 1198220.601 0.10434996 0.092033442 5.07E-07 6.295018012 0.198975234 ADSGPTQPPLSLS(ph)PAPETK ddPTM_HeLa_A485_30min_R1 6 ADSGPTQPPLSLSPAPETK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 ADSGPTQPPLS(0.001)LS(0.999)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLS(0.001)LS(0.999)PAPETK;ADSGPTQPPLSLS(1)PAPETK ;;;;; 265.29 2.08E-58 4254660000 2990560 2499870 2186490 3547970 3340290 2627910 3719570 3121930 2509460 4512270 TRUE FALSE FALSE 3655799.755 2792208.051 2995363.638 3741786.617 3007718.999 2765503.304 2924853.483 2356271.773 3013085.604 3387444.131 1.079220679 0.824281654 0.884254772 1.104604673 0.887902171 0.816398204 0.863439623 0.695589855 0.889486435 1 21.69176572 -5.993827257 24.98210178 0.836559553 0.961133042 0.217258244 0.104729594 234.0618812 947277.5965 0.032037341 0.036229662 1.01E-06 5.993827257 0.124573488 ADSGPTQPPLSLS(ph)PAPETK ddPTM_HeLa_A486_30min_R1 6 ADSGPTQPPLSLSPAPETK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 ADSGPTQPPLS(0.432)LS(0.568)PAPETK;ADSGPTQPPLS(0.001)LS(0.999)PAPETK;ADSGPTQPPLSLS(1)PAPETK;ADSGPTQPPLS(0.001)LS(0.999)PAPETK;ADSGPTQPPLS(0.001)LS(0.999)PAPETK;ADSGPTQPPLSLS(1)PAPETK ;;;;; 331.82 6.70E-102 4909310000 2727267 2714196 1492947 942694 2273358 2432587 2845991 2699826 1811855 2795261 TRUE FALSE FALSE 2536099.667 2499113.224 2071056.061 2194639.273 1988212.241 2132479.149 2133893.95 2085134.557 1968908.05 2095309.452 1.210369984 1.192717965 0.988424912 1.0474058 0.948887163 1.017739479 1.018414702 0.995143966 0.939674113 1 20.9987319 -4.750729186 7.728854971 0.996099202 1.202866653 0.881419244 0.030380275 0.040002246 14.15327788 0.007727975 0.018974651 1.78E-05 4.750729186 0.206767452 ADSGPTQPPLSLS(ph)PAPETKRPGQAAK ddPTM_HeLa_A485_30min_R1 4 ADSGPTQPPLSLSPAPETKRPGQAAK 26 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 ADSGPTQPPLSLS(1)PAPETKRPGQAAK;ADSGPTQPPLS(0.001)LS(0.998)PAPETKRPGQAAK;ADSGPTQPPLS(0.113)LS(0.872)PAPET(0.015)KRPGQAAK;ADSGPTQPPLSLS(1)PAPETKRPGQAAK ;;; 244.04 6.05E-50 3861750000 1179100 2224990 1013590 727660 2040680 2883330 3672840 6654450 1160680 1209180 TRUE FALSE FALSE 1441386.727 2485183.226 1388559.12 767410.2233 1837502.734 3034296.7 2888107.73 5022435.704 1393617.83 907753.6793 1.587861068 2.737728618 1.529665097 0.845394781 2.024230555 3.342643241 3.181598484 5.532817788 1.535237875 1 19.79194135 -6.186161588 4.563760388 3.219171062 1.712377094 0.168953215 1.225246773 0.317540674 12.42745386 0.403423447 0.400261111 6.51E-07 6.186161588 -1.506793968 ADSHEGEVAEGKLPS(ph)PPGPQELLDSPPALYAEPLDSLR ddPTM_HeLa_A485_30min_R1 1 ADSHEGEVAEGKLPSPPGPQELLDSPPALYAEPLDSLR 38 1 Q99704-3;Q99704 Q99704-3 DOK1 Docking protein 1 1 0 ADS(0.15)HEGEVAEGKLPS(0.694)PPGPQELLDS(0.154)PPALY(0.002)AEPLDSLR 43.066 0.02829 68112000 5315.5 5751.1 5719.9 11750 8852.5 7593.5 13427 12624 6736.2 12823 TRUE FALSE FALSE 6497.914637 6423.641117 7835.929035 12391.87275 7971.114017 7991.083918 10558.21176 9527.944206 8088.093552 9626.46209 0.675005477 0.66728992 0.813998846 1.287271755 0.828041906 0.830116386 1.096790458 0.98976593 0.840193778 1 13.23278996 -5.006586802 18.1691526 0.979327962 0.688517163 0.4757614 0.132025054 7.252166449 20016.37388 0.035305277 0.068636938 9.85E-06 5.006586802 -0.290810799 ADSHEGEVAEGKLPS(ph)PPGPQELLDSPPALYAEPLDSLR ddPTM_HeLa_A486_30min_R1 1 ADSHEGEVAEGKLPSPPGPQELLDSPPALYAEPLDSLR 38 1 Q99704-3;Q99704 Q99704-3 DOK1 Docking protein 1 1 0 ADS(0.044)HEGEVAEGKLPS(0.956)PPGPQELLDSPPALYAEPLDSLR 113.21 1.69E-05 95086000 24277 40073 17238 20371 33532 41323 63488 53378 30210 61246 TRUE FALSE FALSE 22575.30767 36897.46954 23913.01525 47424.71749 29326.10389 36224.9884 47602.63089 41224.99463 32828.62712 45909.60296 0.49173389 0.803698293 0.52087175 1.033002127 0.638779297 0.789050353 1.036877425 0.897960165 0.715071031 1 15.48650833 -3.371358971 0.349936217 0.914367189 9.47E-18 0.35315818 0.153811098 14.48277108 0.87620875 0.136220158 6.310680862 0.000425247 3.371358971 -0.914367189 ADSLLAVVK(ac)R ddPTM_HeLa_A485_30min_R1 2 ADSLLAVVKR 10 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 1 ; ADSLLAVVK(1)R;ADSLLAVVK(1)R 248.96 8.61E-35 257120000 228350 314200 330060 249360 348050 290340 360950 366910 347220 394590 FALSE TRUE FALSE 279145.6697 350942.9568 452162.9289 262981.9054 313396.9199 305541.7534 283830.0838 276924.7472 416903.8691 296225.9749 0.942340285 1.184713653 1.526412156 0.88777463 1.057965697 1.031448216 0.958153936 0.934842893 1.40738458 1 18.17633862 -5.316091791 24.99999437 1.033963425 1.214515776 0.159327019 0.187181678 540.8569224 247406.3518 0.052527261 0.077910576 4.83E-06 5.316091791 0.180552351 ADSLLAVVK(ac)R ddPTM_HeLa_A486_30min_R1 2 ADSLLAVVKR 10 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 1 ; ADSLLAVVK(1)R;ADSLLAVVK(1)R 234.47 2.54E-26 300270000 306270 353250 314720 118171 410930 330230 331800 365260 306070 374180 FALSE TRUE FALSE 284802.0546 325257.1835 436588.0125 275108.06 359387.3276 289489.5801 248780.1306 282098.2716 332600.394 280482.8925 1.015399021 1.159632877 1.556558436 0.980837218 1.281316391 1.032111362 0.886970782 1.005759278 1.185813477 1 18.09755325 -6.339138862 6.908004749 1.012661979 1.204087201 0.227145353 0.162430657 0.392879383 29.84527036 0.057931773 0.051036747 4.58E-07 6.339138862 0.191425222 ADTGHAFLAK(ac)PPAR ddPTM_HeLa_A485_30min_R1 1 ADTGHAFLAKPPAR 14 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 0 1 ADTGHAFLAK(1)PPAR 78.814 0.013108 19076000 12462 15896 16800 18560 23738 14727 19206 22741 15816 26372 FALSE TRUE FALSE 15234.12891 17754.89892 23015.01911 19573.8858 21374.56137 15498.08295 15102.4812 17163.73409 18990.12613 19797.94574 0.769480284 0.896805111 1.162495312 0.988682667 1.079635314 0.782812679 0.76283072 0.866945203 0.959196796 1 14.27306312 -6.266385129 24.97554578 0.85907076 0.985515508 0.158081536 0.118218825 713.2831724 3601995.441 0.043081358 0.039191142 5.42E-07 6.266385129 0.126444748 ADTGHAFLAK(ac)PPAR ddPTM_HeLa_A486_30min_R1 2 ADTGHAFLAKPPAR 14 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 0 1 ; ADTGHAFLAK(1)PPAR;ADTGHAFLAK(1)PPAR 119.01 0.00012492 38820000 27553 50027 40598 19574.2 55792 40013 47688 45002 37599 38036 FALSE TRUE FALSE 25621.67698 46062.67832 56318.63285 45569.72683 48794.04712 35076.60288 35755.95801 34756.02699 40858.11159 28511.53803 0.898642401 1.615580271 1.975292697 1.598290726 1.711378989 1.230259934 1.254087309 1.219016209 1.433037795 1 14.79925825 -6.273481985 23.98452175 1.242644161 1.588151049 0.268981454 0.27153447 620.1744174 1235159.027 0.09757512 0.086761394 5.33E-07 6.273481985 0.345506888 ADTS(ph)QEICSPR ddPTM_HeLa_A486_30min_R1 1 ADTSQEICSPR 11 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ADT(0.01)S(0.99)QEICSPR 179.41 2.15E-10 1083100000 1234900 1741200 1394200 574130 2043400 1612700 1848200 2034000 1426900 1576200 TRUE FALSE FALSE 1148339.887 1603220.971 1934071.578 1336603.655 1787097.718 1413741.471 1385760.812 1570902.602 1550584.841 1181509.261 0.971926269 1.356926284 1.636949995 1.131268031 1.512554982 1.196555556 1.172873424 1.329572822 1.312376375 1 20.17219951 ADTSQEICS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ADTSQEICSPR 11 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ADTSQEICS(1)PR 134.43 2.75E-05 839040000 655070 684170 795640 701190 951250 539830 722050 642270 719490 887290 TRUE FALSE FALSE 800788.0615 764177.73 1089980.345 739494.2342 856540.21 568094.6641 567778.1189 484752.2755 863885.0434 666104.9324 1.202195064 1.147233255 1.636349308 1.110176788 1.285893811 0.852860618 0.8523854 0.727741609 1.296920352 1 19.34538994 -6.254849461 24.02010858 0.923115679 1.279961366 0.419908824 0.193206997 287.4171997 1047629.506 0.063724352 0.062226179 5.56E-07 6.254849461 0.356845686 ADTSQEICS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ADTSQEICSPR 11 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ADTSQEICS(1)PR 150.85 6.11E-07 693120000 950340 1389900 1205800 368610 1565300 1096100 1194300 1251900 1097400 960380 TRUE FALSE FALSE 883726.0736 1279759.262 1672718.052 858142.7085 1368965.478 960874.3263 895473.508 966869.6988 1192523.516 719894.597 1.227577033 1.777703663 2.32355967 1.192039379 1.901619326 1.334743073 1.243895303 1.343071198 1.656525164 1 19.45742616 -6.286584714 22.0534514 1.332604133 1.697822163 0.228595026 0.337630311 280.2293071 245769.8458 0.117769371 0.103942612 5.17E-07 6.286584714 0.36521803 ADVFHAYLSLLK ddPTM_HeLa_A485_30min_R1 1 ADVFHAYLSLLK 12 0 Q86VP6-2;Q86VP6;A0A0C4DGH5;H0YH27;Q86VP6-3 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 116.01 0.00072152 20596000 7790.6 8641.9 7043.2 10175 10101 7975.1 9672.6 11390 7990.2 14036 FALSE FALSE TRUE 9523.592093 9652.49503 9648.772772 10730.83449 9095.308973 8392.663904 7605.969992 8596.584641 9593.75985 10537.08351 0.903816704 0.916049969 0.915696716 1.018387533 0.863171385 0.796488316 0.721828766 0.81584099 0.910475829 1 13.36318799 -5.986273559 24.39583428 0.829512836 0.935947436 0.224122567 0.075583749 220.3228768 391573.9073 0.023401228 0.026520204 1.03E-06 5.986273559 0.1064346 ADVGRLS(ph)PEVK ddPTM_HeLa_A485_30min_R1 4 ADVGRLSPEVK 11 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 ADVGRLS(1)PEVK;ADVGRLS(1)PEVK;ADVGRLS(1)PEVK;ADVGRLS(1)PEVK ;;; 114.33 0.00019322 1449920000 2828360 2077340 1771870 4815940 2713710 2182470 3191250 2307920 2233300 5969730 TRUE FALSE FALSE 3457518.924 2320266.843 2427358.447 5079022.608 2443523.504 2296740.754 2509413.367 1741899.001 2681502.825 4481586.176 0.771494464 0.517733399 0.541629314 1.133309147 0.545236309 0.512483898 0.559938662 0.388679127 0.598337892 1 22.09557801 -10.0394793 5.641746475 1.000001468 0.614868721 0.256943131 0.194395221 3.72E-06 6.34E-07 0.195305391 0.047368334 9.13E-11 10.0394793 -0.385132747 ADVGRLS(ph)PEVK ddPTM_HeLa_A486_30min_R1 5 ADVGRLSPEVK 11 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 ADVGRLS(1)PEVK;ADVGRLS(1)PEVK;ADVGRLS(1)PEVK;ADVGRLS(1)PEVK;ADVGRLS(1)PEVK ;;;; 128.95 2.34E-05 1523820000 2611760 3156340 1740600 1264840 2645880 3391130 3545890 3300940 2582990 3852390 TRUE FALSE FALSE 2428689.111 2906220.123 2414606.935 2944611.441 2314009.059 2972766.859 2658670.817 2549388.021 2806885.653 2887726.469 0.841038491 1.006404226 0.836161929 1.019698878 0.80132557 1.029448908 0.920679589 0.882835701 0.972005376 1 21.46150266 -13.99999999 0.150718369 1.274440696 0.90073298 0.103384148 0.076936266 337.4235621 3.009934915 27.63242313 0.356279302 1.00E-14 13.99999999 -0.373707715 ADVLEAHEAEAEEPEAGKS(ph)EAEDDEDEVDDLPSSR ddPTM_HeLa_A485_30min_R1 3 ADVLEAHEAEAEEPEAGKSEAEDDEDEVDDLPSSR 35 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 ADVLEAHEAEAEEPEAGKS(1)EAEDDEDEVDDLPSSR;ADVLEAHEAEAEEPEAGKS(1)EAEDDEDEVDDLPSSR;ADVLEAHEAEAEEPEAGKS(1)EAEDDEDEVDDLPSSR ;; 350.8 3.51E-149 4191980000 382795 340631 250624 619233 445654 439122 648360 585071 344480 844860 TRUE FALSE FALSE 467946.4271 380464.8324 343340.2469 653060.1308 401283.123 462113.7489 509832.5894 441581.4199 413613.9762 634251.9505 0.73779265 0.599863874 0.541331007 1.029654115 0.632687251 0.728596496 0.803832907 0.696223984 0.65212882 1 19.27469653 -11.05773014 2.570163223 1.401585407 0.714662439 0.312935728 0.127315809 13613571.78 4514836.158 32133969.9 0.032175993 8.76E-12 11.05773014 -0.686922968 ADVLEAHEAEAEEPEAGKS(ph)EAEDDEDEVDDLPSSR ddPTM_HeLa_A486_30min_R1 2 ADVLEAHEAEAEEPEAGKSEAEDDEDEVDDLPSSR 35 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 ADVLEAHEAEAEEPEAGKS(1)EAEDDEDEVDDLPSSR;ADVLEAHEAEAEEPEAGKS(1)EAEDDEDEVDDLPSSR ; 398.63 2.03E-195 3841800000 360290 384610 207050 217980 339150 413510 546950 494730 301400 701620 TRUE FALSE FALSE 335035.5315 354132.1029 287225.305 507468.4561 296610.6446 362495.3405 410097.325 382090.7789 327525.5947 525929.7852 0.637034716 0.673344832 0.546128615 0.96489773 0.563973848 0.689246646 0.779756797 0.726505305 0.622755364 1 19.00451068 -11.50241569 2.121707368 4.576617069 0.692787799 0.401689019 0.113688073 4174533.222 231776.5029 72088831.94 0.027900236 3.14E-12 11.50241569 -3.88382927 ADVQLFMDDDS(ph)Y(ph)SHHSGLEYADPEK ddPTM_HeLa_A486_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 2 0 ADVQLFMDDDS(0.47)Y(0.52)S(0.488)HHS(0.459)GLEY(0.063)ADPEK 44.615 0.037149 45796000 46933 47130 32817 21918 50871 62014 53163 45609 63345 79109 TRUE FALSE FALSE 43643.23906 43395.24716 45524.62127 51026.21167 44490.28483 54363.34319 39861.0551 35224.82634 68835.7956 59299.59149 0.735978747 0.73179673 0.767705479 0.860481673 0.750262923 0.916757465 0.672197803 0.594014654 1.160813993 1 15.85573455 -7.770884675 24.99999975 1.080407133 0.759559612 0.669105827 0.091838989 132.1885361 349866.694 0.085755422 0.023326255 1.69E-08 7.770884675 -0.320847521 ADVQLFMDDDS(ph)YS(ph)HHSGLEYADPEK ddPTM_HeLa_A486_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 2 0 ADVQLFMDDDS(0.502)Y(0.467)S(0.502)HHS(0.502)GLEY(0.026)ADPEK 68.689 0.0036405 121110000 64529 66441 47524 27125 69597 85333 73836 67927 80818 107680 TRUE FALSE FALSE 60005.85033 61175.97319 65926.56554 63148.37082 60867.49529 74805.48206 55361.45184 52461.50494 87823.36931 80716.22712 0.743417433 0.757914181 0.816769662 0.782350378 0.754092423 0.926771292 0.685877596 0.649949915 1.088050971 1 16.30057112 -7.771193471 24.9999976 1.044025661 0.76917347 0.700511337 0.073022405 125.4128293 321425.0586 0.068531312 0.018576872 1.69E-08 7.771193471 -0.274852191 ADVQLFMDDDS(ph)YSHHSGLEYADPEK ddPTM_HeLa_A485_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 1 0 ADVQLFMDDDS(0.25)Y(0.218)S(0.25)HHS(0.25)GLEY(0.03)ADPEK 66.613 0.0085422 99846000 45236 47294 34349 42360 41285 37715 51616 43160 54856 123090 TRUE FALSE FALSE 55298.59214 52824.6219 47056.12448 44674.01954 37174.52044 39689.69908 40587.81994 32574.94233 65865.09603 92405.9283 0.598431217 0.571658365 0.509232745 0.483454042 0.402295839 0.429514641 0.43923394 0.352520049 0.712779983 1 16.49569779 -8.01531053 4.573962984 0.999457732 0.474397732 0.845857219 0.070833557 0.065712346 4.537590852 0.075623614 0.019768954 9.65E-09 8.01531053 -0.52506 ADVQLFMDDDSY(ph)SHHS(ph)GLEYADPEK ddPTM_HeLa_A485_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 2 0 ADVQLFMDDDS(0.097)Y(0.584)S(0.439)HHS(0.879)GLEY(0.001)ADPEK 129.48 3.56E-06 51099000 53451 38920 22576 67275 36197 36858 50927 40693 40879 123580 TRUE FALSE FALSE 65340.99055 43471.35544 30927.80187 70950.0629 32593.09958 38787.82789 40046.03041 30712.97795 49083.04034 92773.78032 0.704304496 0.468573721 0.333367917 0.764764168 0.351318007 0.41809041 0.431652459 0.331052349 0.529061553 1 16.50142951 -8.039481777 22.8212606 1.000000002 0.469914096 0.552432251 0.140719346 1812.209786 1047492.719 0.133390765 0.034441347 9.13E-09 8.039481777 -0.530085907 ADVQLFMDDDSY(ph)SHHS(ph)GLEYADPEK ddPTM_HeLa_A486_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 2 0 ADVQLFMDDDS(0.197)Y(0.585)S(0.452)HHS(0.766)GLEYADPEK 138.8 7.84E-07 403490000 151970 133850 104780 59871 132740 181670 179730 142270 167830 228840 TRUE FALSE FALSE 141317.6878 123243.2385 145353.6221 139382.7137 116090.5114 159257.4025 134759.653 109878.2267 182377.6395 171536.9745 0.823832227 0.718464569 0.8473603 0.812552012 0.676766696 0.92841443 0.7856012 0.640551269 1.06319725 1 17.38816005 -7.777932264 24.99995606 1.03159888 0.78232624 0.608484152 0.080954648 179.9709359 272792.5862 0.074887317 0.019562371 1.67E-08 7.777932264 -0.249272641 ADVQLFMDDDSYS(ph)HHS(ph)GLEYADPEK ddPTM_HeLa_A485_30min_R1 2 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 2 0 ADVQLFMDDDS(0.025)Y(0.001)S(0.974)HHS(1)GLEYADPEK;ADVQLFMDDDS(0.007)YS(0.992)HHS(1)GLEYADPEK ; 188.4 1.67E-20 411800000 485960 306300 214248 599880 302000 321040 487820 387910 351400 1047820 TRUE FALSE FALSE 594060.1255 342119.1205 293507.2508 632649.9254 271931.8196 337849.158 383593.2719 292774.4643 421922.7568 786617.7577 0.75520813 0.434924227 0.373125636 0.80426601 0.345697535 0.429495971 0.487648884 0.372194069 0.536375835 1 19.58530323 -8.045683701 22.61962707 1.000000002 0.493481552 0.498006481 0.149559765 2827.280016 1399885.408 0.140335747 0.036234534 9.00E-09 8.045683701 -0.506518449 ADVQLFMDDDSYS(ph)HHS(ph)GLEYADPEK ddPTM_HeLa_A486_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 2 0 ADVQLFMDDDS(0.109)Y(0.008)S(0.883)HHS(1)GLEYADPEK 192.64 8.42E-21 300790000 184880 203740 140530 80599 185400 227770 245750 199380 234500 324390 TRUE FALSE FALSE 171920.8667 187594.9004 194946.9795 187638.5452 162145.4032 199670.0532 184260.7507 153985.5264 254826.6488 243160.6326 0.707025907 0.771485493 0.801720975 0.771664982 0.666824237 0.821144653 0.757773776 0.63326668 1.047976583 1 17.89155015 -7.772953028 24.99999406 1.023988537 0.74611114 0.800257898 0.056439557 102.1045355 221696.0283 0.052099369 0.013919588 1.69E-08 7.772953028 -0.277877396 ADVQLFMDDDSYSHHS(ph)GLEYADPEK ddPTM_HeLa_A486_30min_R1 1 ADVQLFMDDDSYSHHSGLEYADPEK 25 0 E9PCT3;P51636-3;P51636 E9PCT3 CAV2 Caveolin;Caveolin-2 1 0 ADVQLFMDDDS(0.128)Y(0.111)S(0.128)HHS(0.602)GLEY(0.032)ADPEK 89.829 0.0023148 147840000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 ADVVPQQADPEFPRAS(ph)PR ddPTM_HeLa_A485_30min_R1 5 ADVVPQQADPEFPRASPR 18 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR ;;;; 211.64 4.33E-26 4392150000 2013400 2808170 3031040 2350140 3736860 3097680 3426950 3901190 2706970 3212240 TRUE FALSE FALSE 2461273.884 3136561.054 4152347.828 2478522.197 3364805.097 3259869.735 2694754.137 2944417.036 3250234.049 2411487.685 1.020645429 1.300674714 1.721902979 1.027797991 1.395323359 1.351808577 1.117465436 1.220996091 1.347812833 1 21.20149201 -6.751496183 24.92219337 1.189984925 1.313643559 0.087804204 0.202423421 553.7921136 1388057.554 0.077739461 0.059494322 1.77E-07 6.751496183 0.123658634 ADVVPQQADPEFPRAS(ph)PR ddPTM_HeLa_A486_30min_R1 6 ADVVPQQADPEFPRASPR 18 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR ;;;;; 172.49 9.53E-13 6692170000 1833607.6 2257852.1 2170890 707741 2919257.7 2009948.9 2197469.9 2419343.2 1904220 1993284.4 TRUE FALSE FALSE 1705081.176 2078931.677 3011516.746 1647656.815 2553097.178 1761981.84 1647639.689 1868511.567 2069279.323 1494153.012 1.141169052 1.391378031 2.015534368 1.102736334 1.708725383 1.179251272 1.102724872 1.250549008 1.384917947 1 20.51089647 -6.297489523 24.33812617 1.194100097 1.477126599 0.231061196 0.262631304 685.5640536 462834.7078 0.0912294 0.080460251 5.04E-07 6.297489523 0.283026502 ADYDTLS(ph)LR ddPTM_HeLa_A485_30min_R1 2 ADYDTLSLR 9 0 E9PKC4;Q9Y446;Q9Y446-2;E9PRW6;E9PJR7;E9PK71;E9PQ15 E9PKC4 PKP3 Plakophilin-3 1 0 ADYDTLS(1)LR;ADYDT(0.005)LS(0.995)LR ; 132.25 0.0002219 168520000 383300 332690 354460 305420 513470 399300 599750 630040 318200 400950 TRUE FALSE FALSE 468563.7626 371595.2015 485589.5043 322104.3212 462347.1239 420206.7306 471608.513 475521.7021 382059.8213 301000.5439 1.556687428 1.234533322 1.613251252 1.07011209 1.536034181 1.396033127 1.56680286 1.579803465 1.269299438 1 18.19940657 -8.029062586 7.188886409 1.000020398 1.435510957 0.411703474 0.16429665 0.247274888 56.1229638 0.151201097 0.03914297 9.35E-09 8.029062586 0.435490559 ADYDTLS(ph)LR ddPTM_HeLa_A486_30min_R1 2 ADYDTLSLR 9 0 E9PKC4;Q9Y446;Q9Y446-2;E9PRW6;E9PJR7;E9PK71;E9PQ15 E9PKC4 PKP3 Plakophilin-3 1 0 ADYDTLS(1)LR;ADYDTLS(1)LR ; 160.98 1.34E-05 339130000 384390 601660 569640 237620 682020 618470 760920 769880 495840 501320 TRUE FALSE FALSE 357446.246 553982.2704 790219.8635 553191.3686 596474.692 542169.4595 570529.7678 594595.1304 538819.8104 375786.209 0.951195753 1.47419532 2.102844236 1.472090661 1.587271373 1.442760396 1.518229659 1.582269695 1.433846686 1 18.5195526 -8.155826782 4.099894497 1.000025467 1.532372035 0.255993954 0.261551857 1.552996816 39.03843894 0.256408365 0.067254032 6.99E-09 8.155826782 0.532346569 AEAAAS(ph)ALADADADLEER ddPTM_HeLa_A486_30min_R1 1 AEAAASALADADADLEER 18 0 M0R1T5;O43633 M0R1T5 CHMP2A Charged multivesicular body protein 2a 1 0 AEAAAS(1)ALADADADLEER 126.63 6.77E-07 0 43127 48529 42431 19302 50172 42123 60414 58131 39133 52886 TRUE FALSE FALSE 40104.02001 44683.3853 58861.41954 44936.03147 43878.95992 36926.29254 45297.77821 44895.84029 42525.07995 39643.00137 1.011629257 1.127144357 1.484787163 1.133517391 1.10685262 0.931470657 1.1426425 1.132503563 1.072700817 1 15.27477857 -5.611330122 4.273037246 1.069064725 1.214579181 0.201760736 0.12563845 0.354949758 11.98041108 0.039415508 0.051934917 2.45E-06 5.611330122 0.145514457 AEADKIYSFTDNAPS(ph)PSIGGSSR ddPTM_HeLa_A485_30min_R1 2 AEADKIYSFTDNAPSPSIGGSSR 23 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEADKIYSFTDNAPS(0.964)PS(0.036)IGGSSR;AEADKIYSFTDNAPS(0.996)PS(0.004)IGGSSR ; 198.21 5.56E-29 1832730000 1208200 1325210 1079000 1240790 1605400 1481180 1772640 2025480 1202660 1557760 TRUE FALSE FALSE 1476959.922 1480181.782 1478167.001 1308571.216 1445560.739 1558732.294 1393900.983 1528727.854 1444022.831 1169439.1 1.262964374 1.265719422 1.263996561 1.118973374 1.236114594 1.332888813 1.191939779 1.307231692 1.234799512 1 20.1573853 -8.058334806 22.26518507 1 1.246598419 0.634693416 0.056075135 4450.917921 1698820.023 0.054896256 0.014174152 8.74E-09 8.058334806 0.246598419 AEADKIYSFTDNAPS(ph)PSIGGSSR ddPTM_HeLa_A486_30min_R1 4 AEADKIYSFTDNAPSPSIGGSSR 23 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEADKIYSFTDNAPS(0.999)PS(0.001)IGGSSR;AEADKIYSFTDNAPS(0.972)PS(0.028)IGGSSR;AEADKIYSFTDNAPS(0.783)PS(0.217)IGGSSR;AEADKIYSFTDNAPS(1)PSIGGSSR ;;; 260.49 1.61E-61 2597960000 2435420 2473590 1682110 910080 2747540 2253760 2816200 2769230 1853960 2801540 TRUE FALSE FALSE 2264709.635 2277573.72 2333468.04 2118712.233 2402917.913 1975714.006 2111556.973 2138736.781 2014662.746 2100016.149 1.078424866 1.084550574 1.111166712 1.008902829 1.144237826 0.940808958 1.005495588 1.018438254 0.959355835 1 21.00196899 -6.267027841 24.99995814 0.98726436 1.082581586 0.635656364 0.038041685 311.6734257 1394266.811 0.012620207 0.011449406 5.41E-07 6.267027841 0.095317226 AEAEAGS(ph)PRPDPR ddPTM_HeLa_A485_30min_R1 3 AEAEAGSPRPDPR 13 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 AEAEAGS(1)PRPDPR;AEAEAGS(1)PRPDPR;AEAEAGS(1)PRPDPR ;; 128.73 0.00032315 12353200000 1633660 2035140 2038300 1759160 2603720 2095750 2415600 2643920 1993990 2329710 TRUE FALSE FALSE 1997062.031 2273131.92 2792351.991 1855258.456 2344484.495 2205480.229 1899487.326 1995494.474 2394165.503 1748956.172 1.141859392 1.299707766 1.596582027 1.060780416 1.340505001 1.261026585 1.08606914 1.140963111 1.368911092 1 20.73806271 -6.593231423 7.103294465 1.161352174 1.293842528 0.148977405 0.157005006 0.470876472 39.31764689 0.059838906 0.046230717 2.55E-07 6.593231423 0.132490354 AEAEAGS(ph)PRPDPR ddPTM_HeLa_A486_30min_R1 2 AEAEAGSPRPDPR 13 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 AEAEAGS(1)PRPDPR;AEAEAGS(1)PRPDPR ; 100.08 0.010762 3026400000 668150 758960 763980 322530 1025900 762990 917090 831940 716820 844240 TRUE FALSE FALSE 621316.1353 698817.2455 1059813.516 750866.1398 897222.0559 668860.0513 687624.382 642525.4231 778954.5348 632836.8089 0.98179519 1.104261376 1.674702706 1.186508321 1.417777922 1.056923431 1.086574568 1.015309815 1.230893216 1 19.27147399 -6.284419333 24.23796476 1.079436686 1.281144949 0.219355969 0.183665398 877.2974509 925320.3176 0.066316243 0.058530821 5.19E-07 6.284419333 0.201708263 AEAGAGS(ph)ATEFQFR ddPTM_HeLa_A485_30min_R1 1 AEAGAGSATEFQFR 14 0 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 AEAGAGS(0.947)AT(0.053)EFQFR 171.15 3.43E-12 405200000 196680 268620 240970 228090 292100 251270 254030 325010 226910 273830 TRUE FALSE FALSE 240430.7875 300032.7723 330114.8306 240549.9791 263017.4984 264426.1087 199754.4153 245300.7879 272448.7557 205569.2205 1.169585539 1.459521866 1.605857287 1.170165352 1.279459531 1.286311774 0.971713639 1.193275858 1.325338273 1 17.64926474 -5.296206539 24.63343812 1.183731376 1.416441631 0.34959681 0.147443261 561.7564615 398017.8419 0.042007784 0.062310872 5.06E-06 5.296206539 0.232710255 AEAGAGS(ph)ATEFQFR ddPTM_HeLa_A486_30min_R1 2 AEAGAGSATEFQFR 14 0 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 AEAGAGS(0.947)AT(0.053)EFQFR;AEAGAGS(0.951)AT(0.049)EFQFR ; 200 8.76E-22 830920000 447790 582300 446100 131601 528670 525070 495190 509880 458400 548290 TRUE FALSE FALSE 416402.2334 536156.4273 618841.867 306373.7787 462359.2789 460292.2019 371288.2244 393791.4546 498134.4811 410994.6152 1.013157394 1.304533946 1.505717701 0.745444751 1.124976488 1.119947038 0.903389511 0.958142613 1.212021916 1 18.64875997 -5.256324599 24.99959601 1.012425943 1.277476087 0.351129668 0.165235214 489.0910302 2390532.271 0.045075563 0.075114667 5.54E-06 5.256324599 0.265050144 AEAPAGPALGLPS(ph)PEAESGVDR ddPTM_HeLa_A485_30min_R1 4 AEAPAGPALGLPSPEAESGVDR 22 0 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR ;;; 297.68 1.97E-87 2446650000 432552 563990 455688 410867 437790 479702 473330 447764 404335 522310 TRUE FALSE FALSE 528771.7001 629943.7244 624265.954 433311.6238 394202.0904 504818.455 372199.1787 337949.1769 485481.3257 392107.7294 1.348536793 1.606557783 1.592077654 1.105083097 1.00534129 1.287448365 0.949226834 0.861878386 1.238132506 1 18.58089056 -5.303076641 6.102347365 1.058171382 1.524968981 0.698117728 0.13617755 0.106909258 11.01269906 0.038620754 0.058687384 4.98E-06 5.303076641 0.4667976 AEAPAGPALGLPS(ph)PEAESGVDR ddPTM_HeLa_A486_30min_R1 5 AEAPAGPALGLPSPEAESGVDR 22 0 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 AEAPAGPALGLPS(0.999)PEAES(0.001)GVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR;AEAPAGPALGLPS(1)PEAESGVDR ;;;; 349.32 3.54E-128 2631440000 476745 489970 379665 147583.2 446175 437194 436110 455448 448351 515598 TRUE FALSE FALSE 443327.6374 451142.9928 526681.4558 343581.148 390211.5711 383257.4493 326990.6653 351752.4328 487214.4257 386488.9048 1.147064332 1.167285754 1.362733701 0.888980625 1.009632013 0.991638944 0.846054469 0.910122977 1.26061685 1 18.56006747 -5.269276853 24.99819881 0.978274417 1.219853715 0.460267294 0.118291032 512.5209416 1634722.845 0.033274391 0.050366054 5.38E-06 5.269276853 0.241579298 AEAPAGPALGLPS(ph)PEAESGVDRGEPEPMEVEEGELEIVPVRR ddPTM_HeLa_A485_30min_R1 3 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRR 42 2 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 AEAPAGPALGLPS(0.994)PEAES(0.006)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(1)PEAESGVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.875)PEAES(0.125)GVDRGEPEPMEVEEGELEIVPVRR ;; 183.5 3.85E-22 729310000 21926.3 37442 40137 31049.2 61223 39422 54160 78374 44393 51636 TRUE FALSE FALSE 26803.72979 41820.5162 54985.34654 32745.33918 55127.42315 41486.07496 42588.27355 59152.65361 53302.2679 38764.09549 0.691457635 1.078846692 1.418460713 0.844733735 1.422125873 1.070219089 1.098652581 1.525965017 1.37504222 1 15.24243338 -4.328137604 3.325698129 1.223751693 0.654997209 0.36975507 0.206723771 0.28139279 5.129217935 0.051677883 0.366276188 4.70E-05 4.328137604 -0.568754484 AEAPLPS(ph)PK ddPTM_HeLa_A485_30min_R1 6 AEAPLPSPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK ;;;;; 144.27 0.00010607 10670060000 8564570 5620420 5041500 16561400 9919230 5944840 10399950 7424580 5748640 20558500 TRUE FALSE FALSE 10469729.05 6277679.228 6906560.644 17466107.35 8931636.633 6256102.63 8177915.723 5603690.114 6902339.318 15433644.3 0.678370503 0.406752877 0.447500312 1.131690416 0.578712095 0.405354854 0.529875871 0.363082756 0.447226798 1 23.87957543 -10.12893537 5.249059548 1.000011947 0.553784372 0.282833237 0.212921961 3.14E-05 5.21E-06 0.217266044 0.052693346 7.43E-11 10.12893537 -0.446227576 AEAPLPS(ph)PK ddPTM_HeLa_A486_30min_R1 6 AEAPLPSPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK ;;;;; 150.09 7.19E-05 12067400000 8333410 12811400 6883740 8294930 12668100 14117500 18390100 16433300 9898690 18586100 TRUE FALSE FALSE 7749280.993 11796178.01 9549308.481 19311016.24 11079148.77 12375826.39 13788702.47 12691796.33 10756716.42 13932019.58 0.556220937 0.84669548 0.685421695 1.386088795 0.795229199 0.888300961 0.989713113 0.910980368 0.772085939 1 23.73190107 -4.319852544 1.460367325 0.942598788 0.452637407 0.296076451 0.177212409 1.351921342 2.892670815 0.050138628 0.935033946 4.79E-05 4.319852544 -0.489961381 AEAPPLEREDS(ph)GTFSLGK ddPTM_HeLa_A485_30min_R1 4 AEAPPLEREDSGTFSLGK 18 1 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 AEAPPLEREDS(0.988)GT(0.012)FSLGK;AEAPPLEREDS(0.949)GT(0.05)FS(0.001)LGK;AEAPPLEREDS(0.972)GT(0.028)FSLGK;AEAPPLEREDS(0.969)GT(0.031)FSLGK ;;; 178.22 3.42E-14 1375391000 899822 883059 1061331 1475510 2405520 1220979 2042350 2240950 1523674 2319920 TRUE FALSE FALSE 1099984.3 986325.0685 1453961.503 1556113.375 2166017.983 1284907.572 1605985.238 1691353.499 1829461.396 1741606.639 0.631591701 0.566330563 0.834839205 0.89349302 1.243689553 0.737771402 0.922128569 0.971145528 1.050444661 1 20.73198738 -4.96431339 2.391480855 0.972314114 0.592907736 0.597054527 0.12178595 0.202400818 2.302548319 0.03465944 0.087931168 1.09E-05 4.96431339 -0.379406378 AEAPPLEREDS(ph)GTFSLGK ddPTM_HeLa_A486_30min_R1 2 AEAPPLEREDSGTFSLGK 18 1 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 AEAPPLEREDS(0.938)GT(0.062)FSLGK;AEAPPLEREDS(0.976)GT(0.02)FS(0.003)LGK ; 192.27 1.44E-18 1221380000 682670 745660 685960 489030 1392290 1064880 1428420 1606510 703620 907420 TRUE FALSE FALSE 634818.3583 686571.186 951582.0826 1138486.554 1217656.006 933505.9325 1071014.208 1240742.743 764610.3481 680196.1257 0.93328723 1.009372385 1.398981921 1.673762186 1.79015428 1.372407012 1.574566757 1.824095575 1.124102769 1 19.37559126 -4.799649482 3.322367819 1.527404855 0.947647189 0.375248879 0.254389025 0.206765558 4.626138477 0.064894172 0.172285894 1.59E-05 4.799649482 -0.579757667 AEAS(ph)PNDTAGAR ddPTM_HeLa_A486_30min_R1 2 AEASPNDTAGAR 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 AEAS(0.538)PNDT(0.462)AGAR;AEAS(0.993)PNDT(0.007)AGAR ; 175.6 5.12E-11 561000000 578770 606270 605850 200324 764700 579320 657960 665210 523800 596570 TRUE FALSE FALSE 538201.2118 558226.9572 840451.3452 466364.3958 668784.1955 507849.3885 493331.4488 513756.2044 569203.4057 447184.989 1.20353148 1.248313273 1.879426559 1.042889201 1.495542587 1.135658399 1.103193222 1.148867286 1.272858928 1 18.77051224 -6.280696536 23.87609118 1.139612078 1.376652124 0.239419033 0.215274308 716.5847339 888457.6445 0.07454322 0.06586119 5.24E-07 6.280696536 0.237040046 AEASS(ph)PVPYLSPETNPASSTSAVNHNVNLTNVR ddPTM_HeLa_A485_30min_R1 1 AEASSPVPYLSPETNPASSTSAVNHNVNLTNVR 33 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AEAS(0.022)S(0.978)PVPYLSPETNPASSTSAVNHNVNLTNVR 316.64 1.10E-109 636540000 87142 126770 136520 76819 179680 112600 159910 161050 120700 138300 TRUE FALSE FALSE 106526.4373 141594.6487 187024.4291 81015.42745 161790.4283 118495.5619 125743.9222 121552.235 144923.3829 103824.3552 1.026025512 1.363790302 1.801354111 0.780312358 1.558309011 1.141307949 1.211121628 1.170748759 1.395851509 1 16.66378539 -13.23603309 0.235512659 5.15E-13 1.306310087 0.078326941 0.269133114 297.6310378 4.136218188 142.609922 0.434768355 5.81E-14 13.23603309 1.306310087 AEASS(ph)PVPYLSPETNPASSTSAVNHNVNLTNVR ddPTM_HeLa_A486_30min_R1 1 AEASSPVPYLSPETNPASSTSAVNHNVNLTNVR 33 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AEAS(0.009)S(0.991)PVPYLSPETNPASSTSAVNHNVNLTNVR 305.18 1.53E-93 789390000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 AEASSGDHPTDTEMKEEQK ddPTM_HeLa_A485_30min_R1 1 AEASSGDHPTDTEMKEEQK 19 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 59.872 0.019136 4963000 3449 3393.6 3185.3 5988.5 6216.6 3949.1 7603.7 6075.9 3624.3 8682.8 FALSE FALSE TRUE 4216.218151 3790.452 4363.675021 6315.636591 5597.653476 4155.86877 5979.107378 4585.775998 4351.663766 6518.337755 0.646824131 0.581505921 0.669445982 0.968902936 0.858754745 0.63756573 0.917274864 0.703519236 0.667603295 1 12.67028839 -5.018375253 23.01064241 0.808320259 0.616992666 0.353484275 0.117912474 289.8526578 362975.2173 0.03164626 0.056322887 9.59E-06 5.018375253 -0.191327593 AECGLLLS(ph)PVSGDVHACPFGGSVGDGVGIGGESADKK ddPTM_HeLa_A485_30min_R1 1 AECGLLLSPVSGDVHACPFGGSVGDGVGIGGESADKK 37 1 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 AECGLLLS(0.777)PVS(0.223)GDVHACPFGGSVGDGVGIGGESADKK 91.295 6.06E-05 47237000 32551 27730 11516 27107 16512 23194 29242 24029 11296 30240 TRUE FALSE FALSE 39791.85765 30972.78228 15776.24762 28587.78677 14868.0073 24408.40198 22994.20781 18135.85007 13563.00359 22701.72453 1.752812109 1.364336099 0.694936087 1.259278199 0.65492854 1.075178317 1.012883748 0.798875436 0.597443757 1 14.47051427 -4.544489635 3.678514668 0.896587926 1.703174522 0.664592914 0.199170816 0.123046435 3.479113451 0.050245727 0.185318875 2.85E-05 4.544489635 0.806586596 AEDEALLS(ph)EEDDPIDR ddPTM_HeLa_A485_30min_R1 3 AEDEALLSEEDDPIDR 16 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 AEDEALLS(1)EEDDPIDR;AEDEALLS(1)EEDDPIDR;AEDEALLS(1)EEDDPIDR ;; 280.69 1.04E-58 342867000 227897 194842 149861 245977 144027 165787 196466 166104 188888 446890 TRUE FALSE FALSE 278591.9014 217627.077 205300.8201 259414.1007 129687.1662 174467.351 154489.4341 125366.7336 226796.089 335488.5474 0.830406592 0.648687053 0.611945838 0.773242791 0.386562126 0.520039663 0.460490933 0.373684093 0.676017381 1 18.35590399 -8.020420886 23.91947946 1.00000001 0.570807716 0.443682607 0.142716649 853.7844372 1000058.627 0.145564465 0.037584583 9.54E-09 8.020420886 -0.429192294 AEDEALLS(ph)EEDDPIDR ddPTM_HeLa_A486_30min_R1 3 AEDEALLSEEDDPIDR 16 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 AEDEALLS(1)EEDDPIDR;AEDEALLS(1)EEDDPIDR;AEDEALLS(1)EEDDPIDR ;; 235.95 2.50E-41 417860000 260024 344308 296296 83663 393670 352399 261065 242877 361888 302883 TRUE FALSE FALSE 241797.6604 317023.7801 411029.7463 194771.6921 344292.2378 308923.5943 195743.7757 187579.2091 393256.7432 227039.1254 1.065004369 1.396339858 1.810391692 0.857877213 1.516444521 1.36066237 0.862158782 0.826197726 1.732110017 1 17.79258141 -6.719302384 24.96016383 1.090632791 1.345509951 0.101255355 0.33263339 309.9226548 183584.3105 0.125180052 0.096963224 1.91E-07 6.719302384 0.25487716 AEDEALLS(ph)EEDDPIDRRPWTQQHLEAADIR ddPTM_HeLa_A485_30min_R1 4 AEDEALLSEEDDPIDRRPWTQQHLEAADIR 30 2 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR;AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR;AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR;AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR ;;; 154.28 3.85E-10 1060490000 339855 344995 242153 323089 272857 321033 369537 414392 305076 592175 TRUE FALSE FALSE 415454.5723 385339.1642 331735.4715 340738.534 245690.399 337841.7915 290582.4011 312761.7123 366301.9549 444556.6707 0.934536809 0.866794246 0.746216385 0.766468161 0.552663845 0.759952136 0.653645351 0.703536203 0.823971338 1 18.76200782 -4.646198644 2.158015718 0.727660043 0.936856208 0.217902498 0.110797131 0.445673641 3.757883821 0.028888242 0.132765519 2.26E-05 4.646198644 0.209196165 AEDEALLS(ph)EEDDPIDRRPWTQQHLEAADIR ddPTM_HeLa_A486_30min_R1 3 AEDEALLSEEDDPIDRRPWTQQHLEAADIR 30 2 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR;AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR;AEDEALLS(1)EEDDPIDRRPWTQQHLEAADIR ;; 132.73 9.63E-07 979040000 237476 292141 308749 85355 373588 303252 268216 261659 284963 347969 TRUE FALSE FALSE 220830.1587 268990.6832 428304.8814 198710.7536 326729.1095 265839.8515 201105.5199 202084.9577 309663.8223 260835.2975 0.846626821 1.031266419 1.642051078 0.761824628 1.252626131 1.019186644 0.771005772 0.774760777 1.187200602 1 17.99277959 -6.524803064 24.73030987 0.911703878 1.115507013 0.094338107 0.249555322 119.615288 1537171.985 0.093908405 0.07326642 2.99E-07 6.524803064 0.203803135 AEDGAT(ph)PS(ph)PSNETPKK ddPTM_HeLa_A485_30min_R1 1 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(1)PS(0.998)PS(0.002)NETPKK 92.31 0.00071671 210560000 475060 303000 199280 708400 432120 455910 742600 672010 356590 1029100 TRUE FALSE FALSE 580735.4581 338433.2143 273001.9647 747098.0982 389096.6155 479780.7426 583937.4435 507198.4938 428154.3422 772564.3092 0.751698533 0.43806478 0.353371184 0.967036775 0.503643012 0.621023696 0.755843153 0.656512976 0.554198967 1 19.5592955 -14 0.234725775 3.076681772 0.580894512 0.307943204 0.168017974 206.1840941 2.062291942 204.0788692 0.279309477 1.00E-14 14 -2.49578726 AEDGAT(ph)PSPSNET(ph)PK ddPTM_HeLa_A485_30min_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(1)PSPSNET(1)PK 185.02 1.05E-17 494180000 266470 212010 159660 368390 314560 209320 337980 267610 198420 497040 TRUE FALSE FALSE 325745.3322 236802.7253 218724.878 388514.2129 283241.3019 220279.6715 265767.812 201978.2279 238241.074 373137.0753 0.872991063 0.634626632 0.586178358 1.041210425 0.759081101 0.590345174 0.712252492 0.541297666 0.638481378 1 18.50934619 -6.030708076 23.06084656 0.669450299 0.776632164 0.047820185 0.164456633 692.0778274 519728.1474 0.053724216 0.053816477 9.32E-07 6.030708076 0.107181865 AEDGAT(ph)PSPSNET(ph)PK ddPTM_HeLa_A486_30min_R1 2 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.832)PS(0.168)PSNET(1)PK;AEDGAT(0.999)PS(0.001)PSNET(1)PK ; 307.39 2.08E-68 1292680000 1524010 1553520 756690 865090 1266860 1827450 2127200 1821910 1139970 2621200 TRUE FALSE FALSE 1417184.769 1430413.417 1049700.633 2013973.239 1107958.606 1601997.799 1594952.061 1407100.865 1238783.517 1964834.459 0.721274387 0.72800709 0.534243803 1.02500912 0.563894124 0.815334743 0.811748824 0.716142196 0.630477296 1 20.90597634 -10.44010821 2.943020341 1.006060367 0.730375724 0.273946935 0.133080068 35676445.48 41886768.04 1794291.552 0.031482928 3.63E-11 10.44010821 -0.275684642 AEDGAT(ph)PSPSNETPK ddPTM_HeLa_A486_30min_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.491)PS(0.491)PS(0.018)NETPK 217.77 8.54E-33 5345900000 2227600 2451800 1284700 1219600 2300800 2603700 3150700 2989400 1854200 3072800 TRUE FALSE FALSE 2071456.743 2257510.439 1782170.245 2839290.435 2012212.21 2282481.966 2362361.535 2308778.878 2014923.549 2303350.879 0.899323139 0.980098368 0.773729379 1.232678208 0.873602119 0.990939759 1.025619482 1.002356566 0.874779247 1 21.13530277 AEDGATPS(ph)PSNET(ph)PK ddPTM_HeLa_A485_30min_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.065)PS(0.477)PS(0.459)NET(0.999)PK 87.99 0.0034502 1625600000 539090 455500 354520 910310 578710 591410 840390 697470 441940 1342500 TRUE FALSE FALSE 659008.7107 508766.7627 485671.7008 960037.9303 521091.6004 622375.3131 660833.8111 526414.3889 530633.3043 1007839.457 0.653882626 0.504809332 0.481893914 0.952570297 0.517038301 0.617534181 0.65569353 0.522319686 0.526505785 1 19.94283441 -10.08022691 4.408660329 1.000030768 0.604370653 0.451461207 0.131086609 56806750.54 1.12012329 20101.97288 0.032202923 8.31E-11 10.08022691 -0.395660116 AEDGATPS(ph)PSNET(ph)PK ddPTM_HeLa_A486_30min_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.003)PS(0.957)PS(0.269)NET(0.771)PK 78.069 0.0146 61756000 93736 97714 51226 78456 71492 115770 148590 117940 78028 192620 TRUE FALSE FALSE 87165.59045 89970.78677 71062.07908 182649.5329 62524.80672 101487.4745 111411.2104 91087.63661 84791.52987 144386.6983 0.603695434 0.623123791 0.492164998 1.265002491 0.433037167 0.702886593 0.771616858 0.630858921 0.587253056 1 17.13957831 -10.70588947 2.458393006 1.05980234 0.683753194 0.165281178 0.216262962 21373019.19 15957552.2 7885402.729 0.053919272 1.97E-11 10.70588947 -0.376049146 AEDGATPS(ph)PSNET(ph)PKK ddPTM_HeLa_A485_30min_R1 1 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.004)PS(0.996)PSNET(1)PKK 236.15 1.90E-41 703710000 995380 576370 360680 1912600 927240 790440 1473500 1166400 708940 2799000 TRUE FALSE FALSE 1216798.847 643771.4577 494110.5411 2017080.495 834920.7299 831826.2161 1158674.688 880338.5712 851217.7552 2101260.812 0.57908035 0.306373894 0.235149553 0.959938187 0.397342741 0.395870047 0.551418787 0.418957307 0.405098572 1 21.00282381 -10.4951937 3.20796964 1.012667929 0.470962907 0.411883073 0.189224311 202753634.5 251216922.3 22740855.29 0.048283859 3.20E-11 10.4951937 -0.541705022 AEDGATPS(ph)PSNET(ph)PKK ddPTM_HeLa_A486_30min_R1 2 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.006)PS(0.993)PS(0.001)NET(1)PKK;AEDGAT(0.011)PS(0.989)PS(0.001)NET(1)PKK ; 189.07 4.62E-18 1498330000 1714150 1610430 638410 1558240 1433500 2337380 3147100 2698700 1206010 3816500 TRUE FALSE FALSE 1593996.937 1482813.662 885619.4492 3627661.469 1253697.063 2049017.82 2359662.293 2084264.922 1310547.918 2860823.559 0.557181142 0.518317062 0.309568008 1.268047957 0.438229425 0.716233552 0.824819233 0.728554166 0.458101624 1 21.44799909 -14 0.045569493 2.179535635 1.43E-14 0.135775776 0.256105133 1447.345431 4.889540085 227.9618402 57.99752868 1.00E-14 14 -2.179535635 AEDGATPS(ph)PSNETPK ddPTM_HeLa_A485_30min_R1 6 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.007)PS(0.993)PSNETPK;AEDGAT(0.002)PS(0.998)PSNETPK;AEDGAT(0.003)PS(0.985)PS(0.013)NETPK;AEDGATPS(0.998)PS(0.002)NETPK;AEDGATPS(1)PSNETPK;AEDGATPS(0.998)PS(0.002)NETPK ;;;;; 374.55 1.17E-118 14334840000 8606110 7195210 5197010 11340380 8988670 7993490 12035160 11717960 6783190 14937680 TRUE FALSE FALSE 10520509.48 8036627.219 7119600.265 11959876.24 8093726.454 8412016.776 9463749.748 8844111.937 8144514.014 11213991.28 0.938159235 0.716660734 0.634885482 1.066513781 0.721752519 0.75013584 0.843923409 0.788667631 0.726281465 1 23.41879652 -10.66583122 2.591700415 1.027658879 0.796572931 0.20622392 0.118508855 23494946.01 19703524.2 4301586.641 0.029408606 2.16E-11 10.66583122 -0.231085948 AEDGATPS(ph)PSNETPK ddPTM_HeLa_A486_30min_R1 4 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPS(1)PSNETPK;AEDGATPS(0.976)PS(0.024)NETPK;AEDGATPS(1)PSNETPK;AEDGAT(0.005)PS(0.993)PS(0.001)NETPK ;;; 409.35 4.03E-152 10392220000 5754820 5941770 3218170 2849610 5486870 6573280 7955900 7559300 4539150 8311600 TRUE FALSE FALSE 5351436.836 5470922.506 4464331.61 6634036.091 4798655.602 5762335.546 5965249.671 5838212.408 4932607.177 6230321.261 0.858934333 0.878112424 0.716549183 1.064798397 0.770209978 0.924885781 0.957454587 0.937064425 0.791709925 1 22.57087513 -5.242912205 24.99450942 0.913666019 0.823890052 0.20607089 0.091667078 1480.270765 1996990.823 0.023849158 0.041218202 5.72E-06 5.242912205 -0.089775967 AEDGATPS(ph)PSNETPKK ddPTM_HeLa_A485_30min_R1 3 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.006)PS(0.978)PS(0.016)NETPKK;AEDGAT(0.002)PS(0.996)PS(0.002)NETPKK;AEDGATPS(0.999)PS(0.001)NETPKK ;; 242.34 9.00E-42 4546920000 4604420 3156490 1988300 6068020 4300430 4157260 6369830 6316320 3170720 8352600 TRUE FALSE FALSE 5628657.344 3525614.048 2723854.91 6399500.568 3872264.089 4374927.705 5008863.784 4767232.616 3807054.42 6270450.538 0.897647993 0.562258489 0.434395406 1.020580663 0.617541605 0.69770548 0.798804448 0.760269551 0.607142086 1 22.58013768 -11.07539556 2.34274255 1.438282054 0.708252729 0.225038606 0.160996877 14883449.79 4535370.654 34841461.69 0.039515985 8.41E-12 11.07539556 -0.730029324 AEDGATPS(ph)PSNETPKK ddPTM_HeLa_A486_30min_R1 5 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.041)PS(0.956)PS(0.004)NETPKK;AEDGAT(0.001)PS(0.999)PS(0.001)NETPKK;AEDGATPS(0.997)PS(0.003)NETPKK;AEDGAT(0.004)PS(0.992)PS(0.004)NETPKK;AEDGAT(0.001)PS(0.891)PS(0.107)NETPKK ;;;; 279.96 6.64E-59 6750900000 5827020 5463970 2486093 2837900 5041650 6856990 8031810 7454230 4148650 8345360 TRUE FALSE FALSE 5418575.989 5030985.118 3448774.789 6606774.62 4409279.245 6011044.291 6022166.186 5757064.554 4508258.322 6255627.537 0.866192234 0.804233482 0.551307566 1.056132991 0.704850028 0.960901885 0.962679787 0.920301684 0.720672434 1 22.57672319 -5.270046634 24.99007607 0.896889566 0.746943328 0.247248576 0.129873707 928.9352167 2697044.443 0.035664328 0.053848496 5.37E-06 5.270046634 -0.149946238 AEDGATPSPS(ph)NET(ph)PK ddPTM_HeLa_A486_30min_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.002)PS(0.477)PS(0.83)NET(0.691)PK 77.078 0.015968 61919000 87339 84056 43855 63326 71231 103440 119370 104030 67471 169890 TRUE FALSE FALSE 81216.98712 77395.09643 60836.83048 147426.1283 62296.54378 90678.6245 89502.36343 80344.63996 73319.44061 127348.4382 0.637754088 0.6077428 0.477719486 1.157659492 0.489181844 0.712051328 0.702814771 0.630904007 0.575738828 1 16.95842174 -10.12785534 4.282885449 1.000055297 0.669199226 0.235780185 0.180443217 162490977.3 155685424.2 114651.6971 0.043648704 7.45E-11 10.12785534 -0.330856071 AEDGATPSPSNET(ph)PK ddPTM_HeLa_A485_30min_R1 9 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK ;;;;;;;; 415.75 6.55E-152 80057050000 14656363 11518642 7155651 22954160 15321250 12328924 22209680 18041370 10114162 32634790 TRUE FALSE FALSE 17916620.39 12865646.98 9802824.076 24208087.64 13795812.55 12974447.4 17464400.43 13616695.72 12143981.54 24499537.45 0.731304435 0.525138363 0.400122823 0.988103865 0.563105021 0.52957928 0.712846129 0.555793992 0.495682074 1 24.54625118 -10.47420755 4.409776131 1.001866507 0.611168159 0.357708511 0.156257181 0.002845127 0.000339234 0.150084128 0.036239986 3.36E-11 10.47420755 -0.390698348 AEDGATPSPSNET(ph)PK ddPTM_HeLa_A486_30min_R1 9 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK ;;;;;;;; 379.85 1.63E-118 5489340000 2803305 2850417 1351100 2103482 2448316 3202990 4327950 3847210 2103999 5213220 TRUE FALSE FALSE 2606807.796 2624539.576 1874282.104 4897012.4 2141225.378 2807837.659 3245051.134 2971284.267 2286375.327 3907795.78 0.66707882 0.67161636 0.479626421 1.253139283 0.547936867 0.718522108 0.830404483 0.760347888 0.585080556 1 21.89792364 -11.50044809 2.087934553 3.999809506 0.729495645 0.143262625 0.202226948 5352104.877 279107.1093 76423011.31 0.049285305 3.16E-12 11.50044809 -3.27031386 AEDGATPSPSNET(ph)PKK ddPTM_HeLa_A485_30min_R1 6 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPSNET(1)PKK;AEDGAT(0.001)PS(0.003)PS(0.284)NET(0.712)PKK;AEDGATPSPSNET(1)PKK;AEDGATPSPSNET(1)PKK;AEDGATPS(0.003)PS(0.083)NET(0.914)PKK;AEDGAT(0.008)PS(0.007)PS(0.173)NET(0.811)PKK ;;;;; 274.68 1.52E-58 38414180000 2512970 1467178 997924 4742330 2524260 2301890 4234380 3619630 1854198 7154850 TRUE FALSE FALSE 3071971.507 1638751.704 1367097.615 5001391.48 2272935.811 2422413.401 3329670.121 2731910.067 2226318.531 5371277.57 0.571925667 0.30509533 0.254520009 0.931136292 0.42316484 0.450993897 0.619902822 0.508614577 0.414485847 1 22.35683385 -11.27461524 2.312302072 3.166209293 0.498027808 0.415525397 0.178696493 17958863.38 2530100.081 203694099 0.045134702 5.31E-12 11.27461524 -2.668181485 AEDGATPSPSNET(ph)PKK ddPTM_HeLa_A486_30min_R1 4 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPSNET(1)PKK;AEDGATPSPSNET(1)PKK;AEDGATPSPSNET(1)PKK;AEDGATPSPSNET(1)PKK ;;; 296.81 1.26E-67 23692200000 3519740 3167974 1399890 2832329 2961485 4791500 6688160 5714360 2817113 7326120 TRUE FALSE FALSE 3273024.402 2916932.203 1941964.898 6593805.05 2590027.937 4200373.446 5014711.628 4413324.972 3061302.623 5491611.867 0.596004321 0.531161392 0.353623844 1.200704859 0.471633466 0.764870779 0.913158422 0.803648378 0.557450653 1 22.38879823 -5.213938554 24.99998811 0.795322097 0.497353005 0.341985024 0.20347013 485.8255753 255692.3166 0.053088657 0.091951994 6.11E-06 5.213938554 -0.297969092 AEDGATPSPSNET(ph)PKKK ddPTM_HeLa_A485_30min_R1 5 AEDGATPSPSNETPKKK 17 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPSNET(1)PKKK;AEDGATPSPSNET(1)PKKK;AEDGATPSPSNET(1)PKKK;AEDGATPSPS(0.001)NET(0.999)PKKK;AEDGATPSPSNET(1)PKKK ;;;; 243.48 1.72E-42 11781770000 1111673 1196397 582555 2238000 3999230 3130170 7381730 12010900 1513945 5037170 TRUE FALSE FALSE 1358960.824 1336305.222 798066.3366 2360256.273 3601052.619 3294060.861 5804563.082 9065207.943 1817779.875 3781496.221 0.359371197 0.353380023 0.211045123 0.624159363 0.952282485 0.871099868 1.53499111 2.397254265 0.480703872 1 21.85052575 -6.026552045 1.216625576 1.426966053 0.312948566 0.437616008 0.472601743 0.391123388 1.209301573 0.212322176 0.236879019 9.41E-07 6.026552045 -1.114017487 AEDGATPSPSNET(ph)PKKK ddPTM_HeLa_A486_30min_R1 3 AEDGATPSPSNETPKKK 17 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPSNET(1)PKKK;AEDGATPSPSNET(1)PKKK;AEDGATPSPSNET(1)PKKK ;; 272.84 2.49E-59 8149400000 2943850 2007020 1464840 6510400 8010400 4823900 11548000 13437900 1856320 5899500 TRUE FALSE FALSE 2737501.317 1847976.426 2032065.278 15156540.22 7005660.938 4228776.264 8658568.258 10378383.52 2017227.312 4422226.801 0.61903232 0.417883684 0.459511773 3.427354792 1.584193044 0.956254949 1.957965669 2.346868215 0.456156458 1 22.07634159 AEDGS(ph)VIDYELIDQDAR ddPTM_HeLa_A486_30min_R1 1 AEDGSVIDYELIDQDAR 17 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 1 0 AEDGS(1)VIDYELIDQDAR 191.47 8.87E-18 0 45224 72142 90368 12791 105680 54662 33424 52079 69541 37558 TRUE FALSE FALSE 42054.03114 66425.20518 125360.9097 29778.09442 92424.62897 47918.3582 25060.96168 40221.74858 75568.86987 28153.23234 1.493754985 2.359416652 4.45280699 1.057714939 3.282913587 1.702055296 0.890162855 1.428672491 2.684198708 1 14.78101295 -6.448948541 8.668253967 1.502539133 2.54227677 0.205443788 0.978008661 0.61163873 67.37169764 0.341372953 0.300329186 3.56E-07 6.448948541 1.039737637 AEDGSVIDYELIDQDAR ddPTM_HeLa_A486_30min_R1 1 AEDGSVIDYELIDQDAR 17 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 0 0 155.66 9.42E-07 30536000 11867 16018 14469 6461.7 30312 16494 13713 18635 16978 16660 FALSE FALSE TRUE 11035.18458 14748.67534 20071.78429 15043.16416 26509.98631 14459.13798 10281.86236 14392.2173 18449.66671 12488.22756 0.883646981 1.181006293 1.60725645 1.204587607 2.122798146 1.157821469 0.823324392 1.152462768 1.477364712 1 13.60828111 -6.494751411 24.84159234 1.106647194 1.413567786 0.143815596 0.33915669 1301.477877 1149445.498 0.123103547 0.108323571 3.20E-07 6.494751411 0.306920592 AEDKDEGIGS(ph)PDIWEDEKAEDLRR ddPTM_HeLa_A485_30min_R1 1 AEDKDEGIGSPDIWEDEKAEDLRR 24 3 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 AEDKDEGIGS(1)PDIWEDEKAEDLRR 188.8 1.08E-20 248920000 176850 125730 101800 346790 201870 191540 351280 284390 137820 453120 TRUE FALSE FALSE 216189.6724 140433.0298 139460.0563 365734.2596 181771.114 201568.7382 276226.1583 214642.9066 165479.2098 340165.5231 0.635542575 0.41283734 0.409977046 1.075165573 0.534360779 0.592560752 0.812034553 0.630995477 0.486466731 1 18.3758774 -11.56162018 2.231576869 7.727194085 0.624639827 0.265321083 0.189066418 6622811.575 353045.2347 228011370.7 0.049479445 2.74E-12 11.56162018 -7.102554258 AEDKDEGIGS(ph)PDIWEDEKAEDLRR ddPTM_HeLa_A486_30min_R1 2 AEDKDEGIGSPDIWEDEKAEDLRR 24 3 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 AEDKDEGIGS(1)PDIWEDEKAEDLRR;AEDKDEGIGS(1)PDIWEDEKAEDLRR ; 148.66 2.56E-09 394810000 212707 188419 104663 171328 184220 296800 401420 337880 168916 458450 TRUE FALSE FALSE 197797.3377 173487.9922 145191.3166 398860.2424 161113.4098 260183.8336 300980.4702 260952.0999 183557.7749 343651.136 0.575575975 0.504837535 0.422496251 1.160654515 0.468828393 0.757116175 0.875831443 0.759351774 0.534139875 1 18.3905852 -3.706301269 0.101549761 1.088785467 8.23E-35 0.194051607 0.210747924 118.2642225 1.638574628 3.561510679 18.79076406 0.000196652 3.706301269 -1.088785467 AEDQTES(ph)SCESHR ddPTM_HeLa_A485_30min_R1 3 AEDQTESSCESHR 13 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 AEDQTES(0.971)S(0.029)CESHR;AEDQTES(0.939)S(0.061)CESHR;AEDQTES(0.971)S(0.029)CESHR ;; 192.85 8.32E-18 2174320000 1489910 1484330 1725740 1496040 2437280 1428250 1992950 1958880 1627820 2028250 TRUE FALSE FALSE 1821335.339 1657909.482 2364163.04 1577764.877 2194615.845 1503030.962 1567139.952 1478461.609 1954508.543 1522644.602 1.196165761 1.08883549 1.552668979 1.036200355 1.441318507 0.987118701 1.029222413 0.970982727 1.283627539 1 20.53814781 -6.284865155 24.91006363 1.050816196 1.256848475 0.287352646 0.164260708 1004.663158 1068316.09 0.055215976 0.048724129 5.19E-07 6.284865155 0.206032279 AEDQTES(ph)SCESHR ddPTM_HeLa_A486_30min_R1 4 AEDQTESSCESHR 13 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 AEDQT(0.001)ES(0.943)S(0.056)CESHR;AEDQTES(0.828)S(0.172)CESHR;AEDQTES(0.615)S(0.385)CESHR;AEDQTES(0.97)S(0.03)CESHR ;;; 194.51 4.95E-18 2555820000 1698450 2651860 2516460 752320 3140270 2455730 2615960 2753560 2030630 1941020 TRUE FALSE FALSE 1579397.426 2441716.956 3490900.705 1751438.98 2746388.055 2152767.001 1961419.139 2126634.498 2206646.643 1454975.958 1.085514449 1.678183713 2.399284116 1.203758021 1.887583117 1.479589397 1.348076666 1.461628617 1.516620691 1 20.47256388 -6.494858121 9.278021133 1.376069958 1.670735687 0.142557645 0.361622006 0.846277081 270.6863385 0.128791365 0.11098698 3.20E-07 6.494858121 0.294665729 AEDQTES(ph)SCESHRK ddPTM_HeLa_A485_30min_R1 6 AEDQTESSCESHRK 14 1 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 AEDQTES(0.986)S(0.014)CESHRK;AEDQTES(0.98)S(0.02)CESHRK;AEDQT(0.435)ES(0.451)S(0.115)CESHRK;AEDQTES(0.731)S(0.134)CES(0.134)HRK;AEDQTES(0.974)S(0.026)CES(0.001)HRK;AEDQTES(0.906)S(0.047)CES(0.047)HRK ;;;;; 220.64 8.69E-28 4349232000 2348410 2181790 1784890 2559730 2976730 2381080 3466320 3469510 2151187 3347720 TRUE FALSE FALSE 2870805.703 2436931.361 2445195.086 2699561.568 2680356.309 2505749.667 2725712.415 2618607.233 2582910.499 2513195.014 1.142293251 0.969654702 0.972942837 1.07415523 1.06651346 0.997037497 1.084560649 1.041943509 1.027739783 1 21.26109119 -4.240351589 24.26265789 1.029399883 1.14229342 0.441538855 0.039053593 3648.861102 4198120.967 0.010153255 0.422498221 5.75E-05 4.240351589 0.112893537 AEDQTES(ph)SCESHRK ddPTM_HeLa_A486_30min_R1 5 AEDQTESSCESHRK 14 1 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 AEDQTES(0.982)S(0.018)CESHRK;AEDQT(0.001)ES(0.961)S(0.037)CES(0.001)HRK;AEDQTES(0.985)S(0.015)CESHRK;AEDQT(0.002)ES(0.76)S(0.238)CESHRK;AEDQTES(0.971)S(0.025)CES(0.004)HRK ;;;; 184.01 1.68E-17 4901060000 3472390 3393950 2830030 1477964 4140480 4525640 5228950 4486680 3386730 4412390 TRUE FALSE FALSE 3228993.392 3125001.041 3925893.407 3440774.884 3621142.39 3967312.55 3920611.404 3465160.908 3680294.483 3307498.824 0.976264411 0.944823024 1.186967438 1.040295119 1.09482802 1.199490238 1.18537046 1.047668069 1.112712257 1 21.65730921 -4.747530335 24.99962309 1.113201669 0.96054362 0.457000504 0.064305683 199.0283331 357720.4036 0.016316845 0.042690156 1.79E-05 4.747530335 -0.152658048 AEDQTESS(ph)CESHR ddPTM_HeLa_A485_30min_R1 1 AEDQTESSCESHR 13 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 AEDQTES(0.24)S(0.759)CESHR 124.68 2.32E-05 609780000 182690 214800 231320 207890 350100 200140 279420 271460 221190 291930 TRUE FALSE FALSE 223328.7602 239918.9915 316894.894 219246.5043 315242.8147 210619.0209 219719.6343 204884.0094 265580.8041 219157.2236 1.019034447 1.094734582 1.445970563 1.000407382 1.438432234 0.961040743 1.002566243 0.934872262 1.211827745 1 17.74160671 -6.364581199 20.50012828 1.016767607 1.196947191 0.239887706 0.157927506 12.47781265 2470.481932 0.053677311 0.047338792 4.32E-07 6.364581199 0.180179585 AEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_A485_30min_R1 2 AEDSDSEPEPEDNVR 15 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 AEDS(1)DS(1)EPEPEDNVR;AEDS(1)DS(1)EPEPEDNVR ; 309.98 1.65E-77 1152890000 662500 790580 744450 861910 919720 776830 949340 965690 743340 1142430 TRUE FALSE FALSE 809870.8394 883031.4539 1019853.034 908993.9608 828149.4475 817503.6176 746505.7536 728853.0134 892521.5197 857643.2259 0.944298066 1.029602319 1.189134367 1.059874238 0.965610667 0.953197778 0.870415263 0.849832414 1.040667603 1 19.71001809 -5.865848688 3.290882343 0.931077988 1.063938678 0.323002995 0.076638319 0.270374587 5.791243739 0.025924518 0.030311732 1.36E-06 5.865848688 0.13286069 AEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_A486_30min_R1 2 AEDSDSEPEPEDNVR 15 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 AEDS(1)DS(1)EPEPEDNVR;AEDS(1)DS(1)EPEPEDNVR ; 299.65 4.34E-67 941590000 1160900 1322160 1091590 395340 1456850 1197610 1167730 1328940 1144050 1126270 TRUE FALSE FALSE 1079526.905 1217387.226 1514282.882 920371.4994 1274118.288 1049861.055 875551.603 1026369.373 1243217.175 844244.6612 1.278689644 1.44198392 1.793654081 1.090171536 1.509181339 1.243550718 1.037082783 1.215725038 1.472579256 1 19.68730163 -6.051047631 1.301135793 1.196364405 1.456799626 0.217265296 0.207600577 0.700424001 2.448877769 0.091950547 0.099523129 8.89E-07 6.051047631 0.260435221 AEEAQKTES(ph)VDNEGE ddPTM_HeLa_A485_30min_R1 2 AEEAQKTESVDNEGE 15 1 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 AEEAQKT(0.003)ES(0.997)VDNEGE;AEEAQKT(0.014)ES(0.986)VDNEGE ; 189.9 5.74E-17 1165100000 808230 871080 662440 1269710 1051190 1012600 1497590 1363720 828590 1936800 TRUE FALSE FALSE 988017.9751 972945.2286 907504.1224 1339071.042 946529.8326 1065618.17 1177617.662 1029265.532 994880.4127 1453991.404 0.679521194 0.669154732 0.624146828 0.920962145 0.650987227 0.732891658 0.809920649 0.707889695 0.684240918 1 20.47158731 -11.30190961 2.299961287 2.374433703 0.722208765 0.508097805 0.082633293 7491207.115 1069890.32 53538100.61 0.020454847 4.99E-12 11.30190961 -1.652224939 AEEAQKTES(ph)VDNEGE ddPTM_HeLa_A486_30min_R1 1 AEEAQKTESVDNEGE 15 1 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 AEEAQKT(0.053)ES(0.947)VDNEGE 99.055 0.002071 0 370800 391640 220130 203220 353130 402590 467850 425780 335460 550340 TRUE FALSE FALSE 344808.8348 360605.0201 305370.2313 473106.4302 308837.1426 352922.539 350788.9816 328839.1887 364537.9429 412531.2819 0.83583682 0.874127699 0.740235334 1.146837709 0.74863933 0.855504914 0.850333046 0.797125462 0.883661334 1 18.654144 -8.028989629 22.39764459 1.000000004 0.857574554 0.139964347 0.106661099 1653.109653 1277208.143 0.098696495 0.025483325 9.35E-09 8.028989629 -0.14242545 AEEDEILNRS(ph)PR ddPTM_HeLa_A485_30min_R1 12 AEEDEILNRSPR 12 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR ;;;;;;;;;;; 211.57 6.11E-18 1.25E+11 28178310 28092530 17010480 23778470 21850990 25695760 28589540 43345380 23155600 57563450 TRUE FALSE FALSE 34446477.85 31377707.01 23303364.42 25077427.61 19675428.71 27041150.26 22481151.22 32714857.59 27802716.52 43213941.29 0.797114931 0.726101487 0.539255706 0.580308735 0.455302806 0.625750613 0.520229133 0.757044061 0.643373775 1 25.36499348 -8.542540975 0.975304232 1.000353603 0.608061282 0.548077184 0.102351511 1.607488406 2.175473526 0.10691198 0.033690553 2.87E-09 8.542540975 -0.392292322 AEEDEILNRS(ph)PR ddPTM_HeLa_A486_30min_R1 11 AEEDEILNRSPR 12 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR ;;;;;;;;;; 234.21 6.53E-28 1.21E+11 28021930 28434220 25583560 7496336 37467590 25931040 28813080 25506150 27210000 28434980 TRUE FALSE FALSE 26057737.41 26180988.85 35490199.58 17451849.05 32768055.49 22731931.93 21603742.63 19698956.44 29568584.71 21314675.93 1.22252562 1.228308089 1.66505931 0.818771494 1.537347113 1.066492027 1.013561862 0.924196854 1.387240642 1 24.34534378 -6.406759054 21.54015127 1.069432112 1.286614439 0.171022787 0.237175545 12.95090318 2365.890802 0.079817045 0.070391883 3.92E-07 6.406759054 0.217182327 AEEDMDEAIEKGEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A485_30min_R1 1 AEEDMDEAIEKGEAEQSEEEADEEDKAEDAR 31 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR 270.68 1.70E-65 2228900000 747520 506680 190900 870960 252400 593630 892810 786410 270000 1005100 TRUE FALSE FALSE 913803.2451 565931.8185 261521.854 918538.3394 227270.1698 624711.5489 702053.8499 593541.7145 324186.5234 754547.0675 1.211061953 0.750028518 0.346594487 1.217337366 0.301200786 0.827929199 0.930430824 0.786619868 0.429643872 1 19.52525137 -4.266218324 6.140950781 0.723490865 1.222172203 0.208036987 0.280175348 0.181625311 35.6553916 0.065833837 0.379959357 5.42E-05 4.266218324 0.498681339 AEEDMDEAIEKGEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A486_30min_R1 3 AEEDMDEAIEKGEAEQSEEEADEEDKAEDAR 31 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR;AEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR;AEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR ;; 345.97 6.72E-148 4204100000 2583290 1489995 370891 912827 442228 1630062 1883904 1343238 949139 4942950 TRUE FALSE FALSE 2402214.711 1371922.37 514509.928 2125107.388 386759.6406 1428961.524 1412531.293 1037412.03 1031411.133 3705203.147 0.648335494 0.370269137 0.138861463 0.573546794 0.104382844 0.385663476 0.381229109 0.279987895 0.278368309 1 21.82112121 -10.23372167 3.97209729 1.000592189 0.344584537 0.595621156 0.160298008 210497609.3 358931934.4 1515100.627 0.038312793 5.84E-11 10.23372167 -0.656007651 AEEDMDEAIEKGEAEQS(ph)EEEADEEDKAEDAREEEYEPEK ddPTM_HeLa_A485_30min_R1 1 AEEDMDEAIEKGEAEQSEEEADEEDKAEDAREEEYEPEK 39 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AEEDMDEAIEKGEAEQS(0.999)EEEADEEDKAEDAREEEY(0.001)EPEK 50.411 0.019653 20090000 15985 10804 9288.5 39366 13645 14414 27075 23240 11198 46550 TRUE FALSE FALSE 19540.8081 12067.43382 12724.70268 41516.4649 12286.45589 15168.69475 21290.20507 17540.35356 13445.33589 34945.94169 0.559172458 0.345317174 0.364125334 1.188019635 0.351584627 0.434061697 0.609232547 0.501928199 0.384746704 1 15.0928373 -11.15685442 2.331933293 2.092049608 0.529671598 0.263216105 0.23762232 13822621.19 3410310.385 79717581.41 0.060750561 6.97E-12 11.15685442 -1.56237801 AEEGDADEKLFEES(ph)DDKEDEDADGKEVEDADEK ddPTM_HeLa_A485_30min_R1 2 AEEGDADEKLFEESDDKEDEDADGKEVEDADEK 33 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 AEEGDADEKLFEES(1)DDKEDEDADGKEVEDADEK;AEEGDADEKLFEES(1)DDKEDEDADGKEVEDADEK ; 272.24 1.24E-77 893990000 509160 181294 124375 2313800 384150 357050 823210 503340 172903 2680600 TRUE FALSE FALSE 622420.8854 202494.7563 170386.4882 2440197.035 345902.6772 375744.5859 647324.4585 379895.0758 207603.0461 2012375.753 0.309296554 0.100624725 0.084669321 1.212595129 0.171887719 0.186716912 0.321671764 0.188779394 0.103163162 1 20.94046828 -10.18556978 4.673993569 1.000102857 0.303092912 0.307283934 0.316240073 881475625 209.9424599 1031915.411 0.078191697 6.52E-11 10.18556978 -0.697009945 AEEGKS(ph)PFR ddPTM_HeLa_A485_30min_R1 4 AEEGKSPFR 9 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEEGKS(1)PFR;AEEGKS(1)PFR;AEEGKS(1)PFR;AEEGKS(1)PFR ;;; 120.03 0.00022361 2617150000 3255700 2654610 2119090 4397430 3053810 2865090 3682650 3089030 2708840 5669810 TRUE FALSE FALSE 3979919.233 2965043.547 2903029.574 4637650.466 2749761.954 3015101.682 2895821.743 2331440.549 3252479.341 4256430.712 0.935036772 0.696603269 0.682033791 1.089563247 0.646025306 0.708363858 0.680340393 0.547745448 0.76413304 1 22.02121272 AEEGKS(ph)PFR ddPTM_HeLa_A486_30min_R1 3 AEEGKSPFR 9 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEEGKS(1)PFR;AEEGKS(1)PFR;AEEGKS(1)PFR ;; 97.957 0.0010989 2032050000 2390980 2605260 1331170 937940 1944870 2714230 2906420 2705710 2013800 3424170 TRUE FALSE FALSE 2223384.649 2398809.709 1846634.674 2183571.721 1700926.269 2379375.899 2179202.975 2089678.898 2188357.805 2566735.544 0.866230514 0.934576106 0.719448748 0.850719399 0.662680763 0.927004694 0.849017336 0.814138762 0.852584058 1 21.29150323 AEEGKS(ph)PFRESSGDGMK ddPTM_HeLa_A485_30min_R1 2 AEEGKSPFRESSGDGMK 17 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEEGKS(0.999)PFRESSGDGMK;AEEGKS(0.47)PFRES(0.265)S(0.265)GDGMK ; 82.635 0.0017789 932070000 276429 236508 174352 458710 392370 348269 633650 712980 288940 654870 TRUE FALSE FALSE 337919.6774 264165.5533 238852.0602 483768.1658 353304.2651 366503.8263 498265.5011 538120.5371 346927.6077 491622.961 0.68735536 0.537333636 0.485843988 0.984022725 0.718648829 0.745497781 1.013511452 1.094579749 0.705678203 1 18.90719277 -5.63553818 0.787040611 0.94427277 0.555163094 0.436170787 0.151115519 0.693549558 0.899669109 0.082380238 0.167065519 2.31E-06 5.63553818 -0.389109676 AEEGKS(ph)PFRESSGDGMK ddPTM_HeLa_A486_30min_R1 3 AEEGKSPFRESSGDGMK 17 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEEGKS(1)PFRESSGDGMK;AEEGKS(1)PFRESSGDGMK;AEEGKS(1)PFRESSGDGMK ;; 193.71 1.32E-18 2183630000 1447950 1312100 664780 1145010 1586680 1785600 2847010 2581370 1034680 2735140 TRUE FALSE FALSE 1346456.182 1208124.417 922200.6194 2665641.146 1387663.799 1565310.827 2134657.985 1993648.402 1124366.895 2050243.141 0.656730002 0.589259095 0.449800612 1.300158548 0.676828895 0.763475705 1.041173089 0.972396084 0.548406612 1 20.96736358 -5.209080597 24.99997191 0.890050785 0.567662727 0.36415122 0.202581536 378.6994587 180818.5116 0.053725183 0.093054655 6.18E-06 5.209080597 -0.322388059 AEEKENDTVTIS(ph)PK ddPTM_HeLa_A486_30min_R1 1 AEEKENDTVTISPK 14 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AEEKENDT(0.06)VT(0.208)IS(0.732)PK 53.773 0.021702 414290000 252860 216260 127670 216650 239000 295000 389230 366250 157910 459310 TRUE FALSE FALSE 235135.8198 199122.77 177107.2431 504372.1489 209022.3914 258605.8993 291840.5371 282862.8702 171597.7659 344295.7864 0.682947132 0.578347972 0.514404329 1.464938488 0.607101218 0.751115493 0.847644812 0.821569364 0.498402167 1 18.393289 -13.99999996 0.024090874 1.961709416 2.46E-07 0.04232885 0.268784215 10151.31589 18.43417863 1074.775235 519.2472896 1.00E-14 13.99999996 -1.96170917 AEEKS(ph)PISINVK ddPTM_HeLa_A486_30min_R1 1 AEEKSPISINVK 12 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 0 AEEKS(0.999)PIS(0.001)INVK 168.45 8.65E-11 1115100000 1867600 1817700 804560 1059400 1619900 2071200 2904400 2529000 1373200 2937400 TRUE FALSE FALSE 1736690.884 1673658.832 1116107.179 2466336.739 1416717.037 1815676.402 2177688.4 1953201.908 1492230.082 2201855.921 0.788739566 0.760112783 0.506893829 1.120117223 0.643419501 0.824611813 0.989024023 0.887070716 0.67771468 1 21.07028864 -5.246768867 24.99530678 0.865416678 0.692735168 0.246710266 0.152710897 1276.512497 2174891.763 0.040509503 0.069802218 5.67E-06 5.246768867 -0.17268151 AEELS(ph)PAALS(ph)PSLEPIR ddPTM_HeLa_A485_30min_R1 3 AEELSPAALSPSLEPIR 17 0 A0A2R8YFR7;A0A2R8YF49;Q12774;A0A5F9ZGZ6 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 0 AEELS(1)PAALS(0.991)PS(0.009)LEPIR;AEELS(0.998)PAALS(0.911)PS(0.091)LEPIR;AEELS(1)PAALS(0.998)PS(0.002)LEPIR ;; 106.67 5.44E-05 35488000 136130 169102 159159 152557 216245 156881 216761 213262 149575 217319 TRUE FALSE FALSE 166411.6489 188877.0079 218038.5373 160890.8026 194714.8885 165095.0466 170448.2416 160959.1601 179593.3305 163145.3728 1.020020648 1.157722127 1.336467799 0.986180606 1.193505432 1.011950531 1.044762954 0.986599604 1.100817801 1 17.31579854 -6.272424049 24.57243983 1.028984695 1.142336687 0.254770456 0.093927366 837.7462843 1874011.619 0.032654628 0.029091187 5.34E-07 6.272424049 0.113351992 AEELS(ph)PAALS(ph)PSLEPIR ddPTM_HeLa_A486_30min_R1 1 AEELSPAALSPSLEPIR 17 0 A0A2R8YFR7;A0A2R8YF49;Q12774;A0A5F9ZGZ6 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 2 0 AEELS(1)PAALS(0.99)PS(0.01)LEPIR 101.15 0.00079486 23831000 60907 79438 64234 27978 97048 82266 80924 92040 77240 76930 TRUE FALSE FALSE 56637.73382 73143.04357 89107.12505 65134.19793 84875.3349 72116.85734 60675.95927 71084.50122 83935.22539 57666.22727 0.982164718 1.268386143 1.545222035 1.129503368 1.471837832 1.25059087 1.052192282 1.232688604 1.45553523 1 15.81543902 -6.527039629 24.98585249 1.196908586 1.292844132 0.050467247 0.186391308 418.4531804 2512740.3 0.070711919 0.054992294 2.97E-07 6.527039629 0.095935546 AEELSPAALS(ph)PSLEPIR ddPTM_HeLa_A485_30min_R1 1 AEELSPAALSPSLEPIR 17 0 A0A2R8YFR7;A0A2R8YF49;Q12774;A0A5F9ZGZ6 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 AEELSPAALS(0.98)PS(0.02)LEPIR 105.46 0.00021243 40589000 38163 55779 55975 39893 60903 50786 67564 56143 49428 56731 TRUE FALSE FALSE 46652.22769 62301.86884 76682.48181 42072.25358 54839.28348 53445.07643 53128.39945 42373.84122 59347.74622 42589.00576 1.095405419 1.462862721 1.800522939 0.987866536 1.287639439 1.254903125 1.247467475 0.994947885 1.393499218 1 15.37819343 -5.283745526 24.99987132 1.178497053 1.453923714 0.289836754 0.204785427 1006.73346 1128305.98 0.057002971 0.084618647 5.20E-06 5.283745526 0.275426661 AEELSPAALS(ph)PSLEPIR ddPTM_HeLa_A486_30min_R1 2 AEELSPAALSPSLEPIR 17 0 A0A2R8YFR7;A0A2R8YF49;Q12774;A0A5F9ZGZ6 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 AEELS(0.001)PAALS(0.974)PS(0.025)LEPIR;AEELS(0.004)PAALS(0.98)PS(0.016)LEPIR ; 137.14 5.09E-06 53363000 60931 73325 61264 23412 90367 67040 68999 75480 63029 76110 TRUE FALSE FALSE 56660.05155 67514.45995 84987.06151 54504.31918 79032.32822 58769.28641 51734.7204 58294.85172 68492.40447 57051.56061 0.993137628 1.183393745 1.48965358 0.955351941 1.385278989 1.030108305 0.906806402 1.021792412 1.20053516 1 15.79997873 -6.462155766 24.81386479 1.024721844 1.203211885 0.211706239 0.163275811 343.3500048 140306.4838 0.056544958 0.049867873 3.45E-07 6.462155766 0.178490041 AEENTDQAS(ph)PQEDYAGFER ddPTM_HeLa_A485_30min_R1 2 AEENTDQASPQEDYAGFER 19 0 Q9NU22 Q9NU22 MDN1 Midasin 1 0 AEENTDQAS(1)PQEDYAGFER;AEENTDQAS(1)PQEDYAGFER ; 250.64 1.98E-46 1264790000 557190 713780 716070 632380 920040 627000 792640 958560 755650 878840 TRUE FALSE FALSE 681134.9932 797250.3619 980974.0912 666925.3181 828437.5871 659828.7505 623285.9887 723471.657 907302.0238 659761.3619 1.032396003 1.208392016 1.48686199 1.010858405 1.255662479 1.000102141 0.944714293 1.096565666 1.37519727 1 19.33158477 AEENTDQAS(ph)PQEDYAGFER ddPTM_HeLa_A486_30min_R1 2 AEENTDQASPQEDYAGFER 19 0 Q9NU22 Q9NU22 MDN1 Midasin 1 0 AEENTDQAS(1)PQEDYAGFER;AEENTDQAS(1)PQEDYAGFER ; 286.55 4.13E-70 1597800000 658690 765380 566880 236690 777530 643760 774740 785520 572690 613260 TRUE FALSE FALSE 612519.2325 704728.5013 786391.1176 551026.2817 680004.9372 564339.4365 580891.8576 606674.2438 622331.2303 459695.7043 1.332444978 1.533032601 1.710677542 1.19867616 1.479250145 1.227636959 1.263644302 1.319730069 1.353789527 1 18.81031966 -12.4525295 0.084557659 1.95E-07 1.781342564 0.461929051 0.136977292 144.2686495 1.179967532 30.50063419 4.515053385 3.53E-13 12.4525295 1.781342369 AEEQQLPPPLS(ph)PPSPSTPNHR ddPTM_HeLa_A485_30min_R1 3 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.998)PPS(0.002)PSTPNHR;AEEQQLPPPLS(1)PPSPSTPNHR;AEEQQLPPPLS(0.998)PPS(0.002)PS(0.001)TPNHR ;; 136.71 3.61E-07 1018360000 466357 637834 681886 395972 814150 508123 603074 598196 628104 710760 TRUE FALSE FALSE 570096.5057 712423.1379 934144.007 417602.9477 733090.3673 534727.5346 474222.3132 451487.4931 754158.7115 533580.6126 1.06843557 1.335174332 1.7507083 0.782642656 1.373907429 1.002149482 0.888754767 0.846146735 1.413392267 1 19.02534672 -5.273280412 24.9990108 1.042997447 1.379812919 0.2833683 0.248404645 950.3723608 2006442.486 0.069415479 0.103908839 5.33E-06 5.273280412 0.336815472 AEEQQLPPPLS(ph)PPSPSTPNHR ddPTM_HeLa_A486_30min_R1 3 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.996)PPS(0.004)PSTPNHR;AEEQQLPPPLS(0.922)PPS(0.064)PS(0.01)T(0.004)PNHR;AEEQQLPPPLS(0.993)PPS(0.006)PS(0.001)TPNHR ;; 111.55 5.61E-05 1168190000 401600 478130 425090 66718 596560 426040 453700 508170 443940 333195 TRUE FALSE FALSE 373449.9139 440241.2375 589696.2323 155322.8757 521733.8821 373479.5165 340179.4613 392470.7843 482421.0766 249760.8033 1.495230272 1.762651432 2.361043945 0.621886516 2.088934193 1.495348796 1.362021009 1.571386619 1.931532372 1 17.93018756 -10.70144374 2.765339967 0.906264806 1.627452294 0.153575163 0.445147102 111549742.9 90820344.02 72438733.32 0.112825163 1.99E-11 10.70144374 0.721187488 AEEQQLPPPLSPPS(ph)PS(ph)TPNHRR ddPTM_HeLa_A485_30min_R1 1 AEEQQLPPPLSPPSPSTPNHRR 22 1 Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 2 0 AEEQQLPPPLS(0.452)PPS(0.516)PS(0.516)T(0.516)PNHRR 72.015 0.0088281 293450000 71490 149540 146670 36417 157140 142710 142000 196570 115880 65497 TRUE FALSE FALSE 87392.70386 167027.4022 200929.3364 38406.3685 141494.5898 150182.0749 111660.54 148360.8993 139136.0531 49169.80328 1.777365335 3.396950791 4.086437672 0.781096647 2.877672482 3.054355822 2.270916955 3.017317325 2.829705303 1 15.58548496 -10.1551308 4.259819715 0.999624258 2.698829491 0.254518335 0.860213995 53239632.13 31730604.1 196949.6045 0.205418608 7.00E-11 10.1551308 1.699205232 AEEQQLPPPLSPPS(ph)PSTPNHR ddPTM_HeLa_A485_30min_R1 1 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.026)PPS(0.856)PS(0.093)T(0.025)PNHR 121.91 6.27E-06 541840000 356450 402200 438190 355780 486680 372040 510290 407670 421890 485150 TRUE FALSE FALSE 435741.0728 449233.7913 600294.7156 375215.3605 438224.4304 391519.4391 401262.3728 307688.2933 506559.4532 364211.0335 1.196397233 1.233443663 1.648205739 1.030214151 1.203215691 1.074979622 1.101730414 0.844807721 1.390840492 1 18.4744151 -5.322125859 24.99991294 1.090087298 1.346762125 0.330976355 0.173722805 269.2280002 110908.3509 0.047369525 0.070260349 4.76E-06 5.322125859 0.256674827 AEEQQLPPPLSPPS(ph)PSTPNHR ddPTM_HeLa_A486_30min_R1 3 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.005)PPS(0.949)PS(0.034)T(0.012)PNHR;AEEQQLPPPLS(0.032)PPS(0.664)PS(0.25)T(0.054)PNHR;AEEQQLPPPLS(0.094)PPS(0.623)PS(0.21)T(0.073)PNHR ;; 120.92 1.10E-05 1622500000 635110 800620 660350 181853 826660 730450 829470 799950 709120 735820 TRUE FALSE FALSE 590592.0687 737175.9554 916055.2048 423362.9743 722972.5945 640334.5057 621927.8328 617818.8478 770587.0926 551565.8826 1.070755258 1.336514782 1.660826446 0.767565558 1.310763804 1.160939293 1.127567626 1.120117954 1.397089843 1 19.0731737 -5.250309063 24.99506575 1.140480027 1.354080367 0.203101381 0.20720035 1276.861938 2867411.297 0.055114116 0.094302252 5.62E-06 5.250309063 0.21360034 AEEQQLPPPLSPPS(ph)PSTPNHRR ddPTM_HeLa_A485_30min_R1 1 AEEQQLPPPLSPPSPSTPNHRR 22 1 Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.004)PPS(0.937)PS(0.048)T(0.011)PNHRR 137.03 4.24E-07 261540000 74280 123880 102540 70343 113540 117850 125720 153710 82782 112090 TRUE FALSE FALSE 90803.32974 138366.6884 140473.813 74185.65997 102235.5589 124020.4438 98858.89496 116012.3815 99395.58808 84148.02586 1.079090434 1.644324831 1.669365521 0.881609036 1.214948989 1.473836641 1.174821322 1.378670269 1.181199286 1 16.36064181 -13.88490923 0.123110265 1.12E-11 1.456461042 0.141425842 0.23315166 297.1825494 2.413834467 73.90486148 2.173464427 1.30E-14 13.88490923 1.456461042 AEETRYPQQYQPS(ph)PLPVHYELLTDGYTR ddPTM_HeLa_A485_30min_R1 1 AEETRYPQQYQPSPLPVHYELLTDGYTR 28 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 AEET(0.002)RYPQQYQPS(0.998)PLPVHYELLTDGYTR 211.25 3.62E-29 329200000 75132 103520 87597 75750 141650 108580 119000 155880 96338 105950 TRUE FALSE FALSE 91844.8542 115625.7635 120002.7755 79888.03069 127546.8286 114265.0809 93574.67786 117650.1856 115672.1529 79538.61487 1.154720312 1.453706023 1.508736049 1.004393034 1.603583729 1.436598828 1.176468537 1.479158089 1.454289255 1 16.27936782 -10.40268652 5.855869171 0.999883356 1.366988408 0.269870665 0.179295773 0.000263663 2.69E-05 0.167640582 0.040645995 3.96E-11 10.40268652 0.367105052 AEETRYPQQYQPS(ph)PLPVHYELLTDGYTR ddPTM_HeLa_A486_30min_R1 2 AEETRYPQQYQPSPLPVHYELLTDGYTR 28 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 AEET(0.214)RYPQQYQPS(0.786)PLPVHYELLTDGYTR;AEET(0.004)RYPQQYQPS(0.996)PLPVHYELLTDGYTR ; 129.61 3.17E-06 467800000 242110 289240 230860 131142 401680 346200 374230 375410 243480 324420 TRUE FALSE FALSE 225139.3393 266319.569 320255.1746 305305.2035 351297.5489 303489.3639 280593.6958 289937.3381 264585.0424 243183.1204 0.925801671 1.095140027 1.316930115 1.255453927 1.444580316 1.247986963 1.153837056 1.192259305 1.088007433 1 17.89168357 -7.904295225 1.438466895 0.999820469 1.219769737 0.208026404 0.129558348 0.659354949 3.01884492 0.133434918 0.040314666 1.25E-08 7.904295225 0.219949268 AEFTS(ph)PPSLFK ddPTM_HeLa_A485_30min_R1 2 AEFTSPPSLFK 11 0 Q6UN15-5;Q6UN15;Q6UN15-3;A0A0B4J203;Q6UN15-4 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AEFT(0.001)S(0.999)PPS(0.001)LFK;AEFTS(1)PPSLFK ; 231.66 1.27E-18 489120000 1172980 1190280 951330 1371030 1581090 1277010 1565450 1780750 1121410 1694730 TRUE FALSE FALSE 1433905.354 1329472.892 1303266.555 1445925.897 1423671.128 1343872.269 1230978.819 1344018.27 1346466.701 1272265 1.127049281 1.04496539 1.024367215 1.136497425 1.119005182 1.056283297 0.967549071 1.056398054 1.05832252 1 20.27896777 -6.524175382 25 1.023359949 1.086838603 0.390811975 0.0409244 53.54349356 1032303.934 0.016332818 0.012748815 2.99E-07 6.524175382 0.063478654 AEFTS(ph)PPSLFK ddPTM_HeLa_A486_30min_R1 3 AEFTSPPSLFK 11 0 Q6UN15-5;Q6UN15;Q6UN15-3;A0A0B4J203;Q6UN15-4 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AEFT(0.001)S(0.992)PPS(0.007)LFK;AEFT(0.005)S(0.985)PPS(0.01)LFK;AEFT(0.001)S(0.975)PPS(0.025)LFK ;; 150.14 2.60E-06 563000000 1113840 1221160 739420 464370 1252640 1169820 1360030 1423650 910930 1351010 TRUE FALSE FALSE 1035765.568 1124390.834 1025743.226 1081076.828 1095522.211 1025499.502 1019736.109 1099515.973 989890.1458 1012708.302 1.022767924 1.110281047 1.012871351 1.067510581 1.081774691 1.012630685 1.006939616 1.085718336 0.977468185 1 19.94978725 -6.274175392 24.5875073 1.021308024 1.05979332 0.246107171 0.03670245 982.6360759 1897024.003 0.012317184 0.010950548 5.32E-07 6.274175392 0.038485296 AEFTVETR ddPTM_HeLa_A485_30min_R1 2 AEFTVETR 8 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 174.52 8.93E-06 84849000 85706 100682 124454 103911 146163 100368 116912 108961 115921 147341 FALSE FALSE TRUE 104771.004 112455.8841 170494.7136 109587.3948 131610.4985 105623.1133 91932.79612 82238.14391 139185.2814 110611.6003 0.947197253 1.016673511 1.541381854 0.990740524 1.189843544 0.954900869 0.831131598 0.743485707 1.258324453 1 16.75514317 -6.313145102 6.350871297 0.93222754 1.144712749 0.163411563 0.198909202 0.377873531 35.99924119 0.070794126 0.062728637 4.86E-07 6.313145102 0.212485209 AEGAATEEEGT(ph)PK ddPTM_HeLa_A485_30min_R1 5 AEGAATEEEGTPK 13 0 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK ;;;; 201.1 8.83E-21 6135930000 3700720 2718840 1621357 5807120 1895960 2956580 4148070 3363120 2207090 9816510 TRUE FALSE FALSE 4523932.397 3036784.687 2221164.425 6124348.261 1707191.565 3111381.957 3261800.958 2538309.547 2650032.718 7369434.716 0.613877803 0.412078376 0.30140228 0.831047224 0.231658415 0.422200898 0.442612098 0.344437483 0.359597828 1 22.81312253 -10.29339466 3.583652376 1.001648583 0.437122764 0.518132562 0.16202937 125884989.5 199174211 2251878.641 0.038305338 5.09E-11 10.29339466 -0.564525819 AEGAATEEEGT(ph)PK ddPTM_HeLa_A486_30min_R1 4 AEGAATEEEGTPK 13 0 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK ;;; 225.36 7.35E-27 6898590000 3357130 3168450 1523638 1784270 2580280 4474610 4037240 3387150 3167160 8536870 TRUE FALSE FALSE 3121812.523 2917370.483 2113631.438 4153870.732 2256637.222 3922578.113 3027079.85 2615969.886 3441691.979 6399182.186 0.487845545 0.455897394 0.330297119 0.649125249 0.352644628 0.612981159 0.473041673 0.408797532 0.537833098 1 22.60945611 -13.95701076 0.415476474 10 0.467983928 0.725952941 0.096324445 422.5039004 2.914021313 3461.146453 0.05463907 1.10E-14 13.95701076 -9.532016072 AEGAATEEEGT(ph)PKESEPQAAAEPAEAK ddPTM_HeLa_A486_30min_R1 2 AEGAATEEEGTPKESEPQAAAEPAEAK 27 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAATEEEGT(1)PKESEPQAAAEPAEAK;AEGAAT(0.004)EEEGT(0.91)PKES(0.086)EPQAAAEPAEAK ; 239.31 1.14E-49 319880000 254105 238757 122012 293900 353080 447560 591560 544110 231878 773830 TRUE FALSE FALSE 236293.5517 219837.0258 169258.314 684214.0529 308793.4141 392344.5977 443545.4311 420228.0308 251977.3717 580057.9312 0.407361987 0.378991501 0.291795534 1.179561585 0.532349266 0.676388644 0.764657127 0.724458728 0.434400356 1 19.14583747 -5.161536086 24.70598584 0.734890876 0.361339044 0.446111963 0.202736588 36.07536877 8915.261514 0.052829074 0.091502645 6.89E-06 5.161536086 -0.373551831 AEGEAEEESDFDVFPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 AEGEAEEESDFDVFPSSPR 19 0 B1AL69;Q7L3B6 B1AL69 CDC37L1 Hsp90 co-chaperone Cdc37-like 1 1 0 AEGEAEEESDFDVFPS(0.5)S(0.5)PR 221.13 1.05E-34 164880000 92217 98906 100140 74766 119230 91220 105720 99541 68865 108450 TRUE FALSE FALSE 112730.3535 110472.1963 137185.9532 78850.27726 107359.0426 95996.13815 83132.05835 75128.41368 82685.57383 81415.41087 1.384631635 1.356895398 1.685012109 0.968493267 1.318657505 1.179090508 1.021085043 0.922778782 1.015601014 1 16.31301428 -5.9838576 0.700431403 0.962878189 1.459771085 0.560629139 0.154422264 0.556459407 0.606619121 0.103560048 0.143052279 1.04E-06 5.9838576 0.496892895 AEGEAEEESDFDVFPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 AEGEAEEESDFDVFPSSPR 19 0 B1AL69;Q7L3B6 B1AL69 CDC37L1 Hsp90 co-chaperone Cdc37-like 1 1 0 AEGEAEEESDFDVFPS(0.5)S(0.5)PR 185.33 3.50E-18 132420000 78618 99155 77545 31987 98202 81911 86946 84935 62461 67570 TRUE FALSE FALSE 73107.28418 91297.59668 107572.5007 74467.35253 85884.58946 71805.65363 65191.19118 65597.15462 67875.16977 50650.03219 1.443380804 1.802518039 2.123838743 1.470233074 1.695647283 1.41768229 1.287090814 1.295105882 1.340081473 1 15.62827557 -6.4334863 0.925050806 1.196359086 1.770368387 0.585175801 0.192270955 0.420121316 0.752400472 0.128116748 0.09944668 3.69E-07 6.4334863 0.5740093 AEGEPQEES(ph)PLK ddPTM_HeLa_A485_30min_R1 2 AEGEPQEESPLK 12 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEPQEES(1)PLK;AEGEPQEES(1)PLK ; 132.51 2.35E-05 3799900000 942869 643179 505039 1433490 809803 680503 1189370 776514 651578 1818950 TRUE FALSE FALSE 1152606.956 718393.1891 691873.9425 1511797.929 729176.1699 716133.0848 935251.3832 586072.724 782343.728 1365519.24 0.844079616 0.526095252 0.50667462 1.107123125 0.533991868 0.524440128 0.684905313 0.429194043 0.572927649 1 20.38101821 -10.10339191 4.931470767 1.00001317 0.632374094 0.244774745 0.191365035 259529822.5 4.322192951 41038.16006 0.046417926 7.88E-11 10.10339191 -0.367639075 AEGEPQEES(ph)PLK ddPTM_HeLa_A486_30min_R1 4 AEGEPQEESPLK 12 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK ;;; 278.53 8.70E-41 4235240000 2398440 2407760 1086059 1003884 1619690 2547330 2969110 2383050 1945500 3565290 TRUE FALSE FALSE 2230321.742 2216960.329 1506610.13 2337092.685 1416533.377 2233066.324 2226207.274 1840481.537 2114137.506 2672518.178 0.834539409 0.82953985 0.563741771 0.874490847 0.530036948 0.835566374 0.832999862 0.688669417 0.791065716 1 21.34976833 -8.03222321 21.07871733 1.000000004 0.747339483 0.302200099 0.114026563 610.2557097 399198.2811 0.105069935 0.027128931 9.28E-09 8.03222321 -0.252660521 AEGEPQEES(ph)PLKSK ddPTM_HeLa_A485_30min_R1 6 AEGEPQEESPLKSK 14 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(0.988)PLKS(0.012)K;AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK ;;;;; 201.18 3.92E-22 6779560000 3566020 2868650 1778120 6146170 3935320 3951960 7048960 6539470 2812160 8369130 TRUE FALSE FALSE 4359268.846 3204113.664 2435920.582 6481919.704 3543505.723 4158878.515 5542892.111 4935654.729 3376534.717 6282859.913 0.693835118 0.509976938 0.38770888 1.03168299 0.56399566 0.661940354 0.882224367 0.785574531 0.537420023 1 22.58298998 -13.99999991 0.069473493 2.027693428 0.29850651 0.233265209 0.179515062 470.7660219 2.351792397 79.21786265 10.00073424 1.00E-14 13.99999991 -1.729186917 AEGEPQEES(ph)PLKSK ddPTM_HeLa_A486_30min_R1 6 AEGEPQEESPLKSK 14 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEPQEES(1)PLKSK;AEGEPQEES(1)PLKSK;AEGEPQEES(0.997)PLKS(0.003)K;AEGEPQEES(1)PLKSK;AEGEPQEES(0.997)PLKS(0.003)K;AEGEPQEES(0.999)PLKS(0.001)K ;;;;; 189.55 5.62E-18 6702550000 3957416 3138902 1291870.8 2481558 2952961 4325186 6093619 5415705 2426081 6975476 TRUE FALSE FALSE 3680021.575 2890163.974 1792117.771 5777192.435 2582573.096 3791588.527 4568931.074 4182667.196 2636375.654 5228771.407 0.703802344 0.552742461 0.342741656 1.104885256 0.493915854 0.72513947 0.873805856 0.799933076 0.504205567 1 22.31804057 -14 0.092857297 1.922584134 0.454896856 0.169416506 0.208595663 369.658878 2.366941133 68.71458345 4.433073569 1.00E-14 14 -1.467687278 AEGEWEDQEALDYFS(ph)DK ddPTM_HeLa_A485_30min_R1 2 AEGEWEDQEALDYFSDK 17 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDYFS(1)DK;AEGEWEDQEALDYFS(1)DK ; 202.97 4.14E-25 197074000 234674 206743 113391 273234 143097 160753 225414 178520 125056 310520 TRUE FALSE FALSE 286876.4217 230919.7954 155339.0495 288160.0816 128849.7602 169169.7785 177252.4574 134737.6901 150153.5921 233113.0787 1.230632032 0.990591333 0.6663678 1.236138629 0.552735012 0.725698358 0.76037114 0.577992839 0.644123414 1 17.83067042 -1.00000019 0.492572494 0.710445492 16.45068269 0.350913839 0.196828853 108.3414786 1.177470606 0.107004113 1757.482586 0.099999956 1.00000019 15.74023719 AEGEWEDQEALDYFS(ph)DK ddPTM_HeLa_A486_30min_R1 2 AEGEWEDQEALDYFSDK 17 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDYFS(1)DK;AEGEWEDQEALDYFS(1)DK ; 263.09 1.06E-51 195522000 312400 311060 122619 128925 152862 269210 303070 240450 207789 511040 TRUE FALSE FALSE 290502.3732 286410.4727 170100.3607 300143.9155 133688.6226 235997.6073 227238.6805 185704.784 225800.3178 383072.2577 0.758348764 0.747666966 0.444042494 0.783517755 0.348990614 0.616065514 0.593200567 0.484777428 0.589445759 1 18.54725702 -10.62637245 7.561400116 1.000610766 0.591659674 0.446525554 0.134773473 0.001354906 6.69E-05 0.127413617 0.030859685 2.36E-11 10.62637245 -0.408951092 AEGEWEDQEALDYFS(ph)DKES(ph)GKQK ddPTM_HeLa_A486_30min_R1 1 AEGEWEDQEALDYFSDKESGKQK 23 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 AEGEWEDQEALDY(0.043)FS(0.958)DKES(1)GKQK 106.17 0.00016739 146660000 81230 74733 18883 116650 46269 123730 191510 151400 70445 280170 TRUE FALSE FALSE 75536.19647 68810.88491 26195.0033 271567.0952 40465.51058 108465.4506 143592.1724 116929.525 76551.22932 210013.6084 0.359672866 0.327649648 0.124730028 1.293092849 0.192680421 0.516468678 0.683727943 0.556771182 0.364506043 1 17.68012329 -14 0.164701674 2.793037493 0.378856403 0.192262969 0.311552878 234.4180988 2.180930394 138.9158943 1.224533401 1.00E-14 14 -2.41418109 AEGEWEDQEALDYFS(ph)DKESGK ddPTM_HeLa_A485_30min_R1 14 AEGEWEDQEALDYFSDKESGK 21 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.001)FS(0.998)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.176)FS(0.782)DKES(0.041)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.055)FS(0.905)DKES(0.04)GK;AEGEWEDQEALDY(0.064)FS(0.9)DKES(0.037)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.035)FS(0.895)DKES(0.07)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.006)FS(0.961)DKES(0.033)GK ;;;;;;;;;;;;; 209.4 3.78E-27 31451880000 2312628.7 1509483.2 961770.3 4606532 2395727.9 2115534.1 4047879 3121072.6 1601715.8 5862380 TRUE FALSE FALSE 2827064.976 1686004.129 1317569.157 4858175.179 2157200.818 2226300.194 3183016.584 2355624.651 1923165.469 4400996.555 0.642369277 0.383095989 0.299379729 1.103880705 0.490161897 0.505862744 0.723249051 0.535248011 0.436984089 1 22.06939881 -11.02691005 2.606528378 1.504702294 0.570634488 0.270349759 0.212443945 21515609.68 8044976.628 64929563.96 0.054157847 9.40E-12 11.02691005 -0.934067806 AEGEWEDQEALDYFS(ph)DKESGK ddPTM_HeLa_A486_30min_R1 15 AEGEWEDQEALDYFSDKESGK 21 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(0.999)DKES(0.001)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.026)FS(0.971)DKES(0.003)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(0.999)DKES(0.001)GK;AEGEWEDQEALDY(0.059)FS(0.803)DKES(0.138)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDY(0.335)FS(0.579)DKES(0.086)GK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK;AEGEWEDQEALDYFS(1)DKESGK ;;;;;;;;;;;;;; 268.83 7.43E-60 46449611000 1637181.7 1545035.5 585004.5 1329885.8 1308737.6 2236860 2907069 2522331 1322211.9 3570723 TRUE FALSE FALSE 1522423.717 1422601.26 811533.9094 3096041.351 1144583.527 1960898.956 2179689.588 1948051.293 1436822.292 2676590.719 0.568792123 0.531497494 0.303196863 1.156710785 0.427627399 0.732610683 0.814352965 0.727810673 0.536810608 1 21.35196512 -14 0.049959299 2.282893279 3.05E-15 0.200957889 0.22138096 932.6102332 3.438074047 162.8523709 36.3894255 1.00E-14 14 -2.282893279 AEGEWEDQEALDYFS(ph)DKESGKQK ddPTM_HeLa_A485_30min_R1 3 AEGEWEDQEALDYFSDKESGKQK 23 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDYFS(0.988)DKES(0.012)GKQK;AEGEWEDQEALDYFS(1)DKESGKQK;AEGEWEDQEALDYFS(0.998)DKES(0.002)GKQK ;; 184.66 3.49E-21 464367000 158311 279727 89245 127795 407080 569150 1218780 2222510 205198 303194 TRUE FALSE FALSE 193526.7358 312438.6393 122260.4393 134776.1173 366549.6859 598949.8139 958377.6965 1677435.938 246379.3564 227613.3157 0.850243472 1.372672941 0.537140979 0.59212756 1.610405282 2.631435741 4.210551978 7.369674014 1.082447025 1 17.79622543 -6.359752325 2.280839667 3.907649528 0.895021059 0.29774485 1.713143644 0.321940401 3.285760011 0.67222906 0.580834393 4.37E-07 6.359752325 -3.012628469 AEGEWEDQEALDYFSDKES(ph)GK ddPTM_HeLa_A486_30min_R1 1 AEGEWEDQEALDYFSDKESGK 21 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDY(0.182)FS(0.383)DKES(0.435)GK 41.76 0.032929 14842000 12225 10678 5742.2 6233.9 10176 12179 16142 15152 10160 23772 TRUE FALSE FALSE 11368.09063 9831.836391 7965.733621 14512.83424 8899.631193 10676.47881 12103.10087 11702.22037 11040.67698 17819.33647 0.637963745 0.551750982 0.447027511 0.814443022 0.499436733 0.599151311 0.679211647 0.656714709 0.61958968 1 14.121156 -14 0.23884118 3.222078756 0.57096802 0.611372118 0.094051322 110.9589931 1.108289083 119.5185207 0.146908367 1.00E-14 14 -2.651110736 AEGHS(ph)DDESDSEGSDSESTSR ddPTM_HeLa_A485_30min_R1 1 AEGHSDDESDSEGSDSESTSR 21 0 Q8NBY1;B4E0Y9;Q9P289-3;Q9P289;Q9P289-2 Q8NBY1 STK26 Serine/threonine-protein kinase 26 1 0 AEGHS(0.999)DDES(0.001)DSEGSDSESTSR 168.25 8.51E-14 56906000 15565 30007 36344 21741 36256 26332 26657 20917 30764 35606 TRUE FALSE FALSE 19027.38055 33516.05762 49789.158 22928.65578 32646.22534 27710.7028 20961.51418 15787.07295 36938.05262 26730.07948 0.711834043 1.253870481 1.862664046 0.857784796 1.221329153 1.036686136 0.784191989 0.590610775 1.381890864 1 14.70617651 -6.446445766 3.520470904 0.904510495 1.205212411 0.096091645 0.339233271 0.512529886 12.21540257 0.130901192 0.110318229 3.58E-07 6.446445766 0.300701917 AEGPEVDVNLPK ddPTM_HeLa_A485_30min_R1 1 AEGPEVDVNLPK 12 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 158.79 1.63E-05 28666000 22989 21097 19394 28552 30528 26575 31592 36090 23625 42660 FALSE FALSE TRUE 28102.82374 23564.11063 26568.64765 30111.72346 27488.52513 27966.42591 24842.11112 27238.87091 28366.3208 32025.6471 0.877509942 0.735788743 0.829605334 0.940237784 0.858328484 0.873250924 0.775694275 0.850533038 0.885737631 1 14.9669401 -8.153230514 2.362911052 0.999795242 0.841205115 0.446282004 0.052965432 0.575487316 6.10705523 0.053319751 0.014532189 7.03E-09 8.153230514 -0.158590127 AEGPLDS(ph)PSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK ddPTM_HeLa_A485_30min_R1 4 AEGPLDSPSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK 42 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;F8W1U7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 AEGPLDS(0.961)PS(0.021)EGHS(0.017)YQNS(0.001)GLDHFQNSNIDQSFWETFGSAEPTK;AEGPLDS(0.99)PS(0.008)EGHS(0.002)YQNSGLDHFQNSNIDQSFWETFGSAEPTK;AEGPLDS(0.264)PS(0.244)EGHS(0.225)Y(0.208)QNS(0.044)GLDHFQNS(0.011)NIDQS(0.003)FWET(0.001)FGSAEPTK;AEGPLDS(0.846)PS(0.036)EGHS(0.036)Y(0.035)QNS(0.036)GLDHFQNS(0.009)NIDQS(0.001)FWETFGSAEPTK ;;; 257 1.11E-65 765790000 175655 192395 152425 112568 228790 158598 217260 212236 143766 194318 TRUE FALSE FALSE 214728.8487 214893.9216 208813.3504 118717.3048 206010.8643 166901.946 170840.6261 160184.7882 172618.5175 145878.0988 1.47197455 1.473106131 1.43142358 0.813811709 1.41221243 1.144119285 1.171119089 1.098072909 1.183306603 1 17.15440378 -5.037206365 24.54966506 1.136103199 1.467471578 0.544356414 0.142705659 320.6028009 211541.2908 0.036616937 0.063448496 9.18E-06 5.037206365 0.331368379 AEGPLDS(ph)PSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK ddPTM_HeLa_A486_30min_R1 1 AEGPLDSPSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK 42 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;F8W1U7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 AEGPLDS(0.703)PS(0.018)EGHS(0.268)YQNS(0.011)GLDHFQNSNIDQSFWETFGSAEPTK 229.12 4.36E-41 169560000 45683 43073 25568 3560.6 42160 31185 39550 41224 31915 28792 TRUE FALSE FALSE 42480.85761 39659.73861 35468.61433 8289.256743 36871.89967 27337.71177 29654.17168 31838.19511 34681.4179 21582.2958 1.968319682 1.837605183 1.643412484 0.384076691 1.708432691 1.266673019 1.374004506 1.475199646 1.606938308 1 14.39756072 -5.009025857 24.29166537 1.280683616 1.862349377 0.359317255 0.350810806 333.688027 898080.9447 0.092711143 0.178086425 9.79E-06 5.009025857 0.581665761 AEGPLDSPSEGHS(ph)YQNSGLDHFQNSNIDQSFWETFGSAEPTK ddPTM_HeLa_A486_30min_R1 1 AEGPLDSPSEGHSYQNSGLDHFQNSNIDQSFWETFGSAEPTK 42 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;F8W1U7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 AEGPLDS(0.046)PS(0.051)EGHS(0.842)Y(0.002)QNS(0.056)GLDHFQNS(0.004)NIDQSFWETFGSAEPTK 112.45 7.62E-07 194570000 11468 14739 9716.4 1800.3 16441 11011 12863 15290 11191 10343 TRUE FALSE FALSE 10664.15242 13571.02796 13478.85029 4191.189382 14378.81647 9652.574772 9644.541349 11808.80078 12161.04489 7753.045478 1.375479152 1.750412531 1.738523311 0.540586199 1.854602364 1.245004276 1.243968112 1.523117698 1.568550697 1 12.92054741 -10.86406252 2.323004445 0.795084863 1.424027873 0.1143331 0.356206617 20723890.98 11093099.43 23427403.4 0.091490491 1.37E-11 10.86406252 0.62894301 AEGVS(ph)TPLAGR ddPTM_HeLa_A486_30min_R1 1 AEGVSTPLAGR 11 0 P29590;P29590-11 P29590;P29590-11 PML Protein PML 1 0 AEGVS(0.636)T(0.364)PLAGR 132.17 0.00014584 0 242700 284910 234220 77464 341450 277340 279180 297130 248400 265550 TRUE FALSE FALSE 225687.9833 262332.694 324916.2566 180340.1068 298622.1571 243124.6106 209326.2111 229479.9853 269931.512 199054.5516 1.133799662 1.317893472 1.632297549 0.905983337 1.500202607 1.221396892 1.051602234 1.152849726 1.356068022 1 17.60280433 -6.520538998 24.83602263 1.150529182 1.302415185 0.118514763 0.202106011 199.9156346 2122124.38 0.074205843 0.058499533 3.02E-07 6.520538998 0.151886003 AEHLES(ph)PQLGGK ddPTM_HeLa_A485_30min_R1 4 AEHLESPQLGGK 12 0 Q9NYD6;D6RAG4 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 AEHLES(1)PQLGGK;AEHLES(1)PQLGGK;AEHLES(1)PQLGGK;AEHLES(1)PQLGGK ;;; 182.7 5.19E-13 1505800000 2300870 2277900 1807070 2839340 2985620 2586360 3325490 3657670 2001700 3353640 TRUE FALSE FALSE 2812690.594 2544280.59 2475580.391 2994445.955 2688361.19 2721777.81 2614971.895 2760620.697 2403422.829 2517639.267 1.117193647 1.010581867 0.98329432 1.18938642 1.067810319 1.081083317 1.038660275 1.096511614 0.954633517 1 21.26364015 -7.762560398 24.9999978 0.977316731 1.070812731 0.325324956 0.055078053 36.27973849 808903.3292 0.04465242 0.014011801 1.73E-08 7.762560398 0.093496001 AEHLES(ph)PQLGGK ddPTM_HeLa_A486_30min_R1 4 AEHLESPQLGGK 12 0 Q9NYD6;D6RAG4 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 AEHLES(1)PQLGGK;AEHLES(1)PQLGGK;AEHLES(1)PQLGGK;AEHLES(1)PQLGGK ;;; 190.41 2.38E-13 1379470000 2020959 2156364 1229083 1010508 2162307 2286160 2728460 2656950 1713675 2856710 TRUE FALSE FALSE 1879300.21 1985485.863 1705016.854 2352513.692 1891090.293 2004116.823 2045770.449 2052020.486 1862217.729 2141371.222 0.877615329 0.92720302 0.796226659 1.098601526 0.883121186 0.935903501 0.955355348 0.958274056 0.869637973 1 21.03010349 -5.210954304 24.99996836 0.951472906 0.873033889 0.273490143 0.066730097 538.1294792 266478.1405 0.017303742 0.029970915 6.15E-06 5.210954304 -0.078439016 AEHMETNAVGPS(ph)PSSDTR ddPTM_HeLa_A485_30min_R1 3 AEHMETNAVGPSPSSDTR 18 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEHMETNAVGPS(0.916)PS(0.066)S(0.018)DTR;AEHMETNAVGPS(0.914)PS(0.07)S(0.016)DTR;AEHMETNAVGPS(0.79)PS(0.095)S(0.114)DT(0.001)R ;; 229.48 7.34E-35 1278320000 384840 552800 559560 429760 688800 554440 633850 710630 545370 602720 TRUE FALSE FALSE 470446.3303 617445.1513 766564.5292 453236.7006 620220.6535 583469.6211 498422.7694 536346.8783 654820.7566 452472.9962 1.039722446 1.364601106 1.69416636 1.001687845 1.370735179 1.289512581 1.10155252 1.185367708 1.447204059 1 18.78747217 -6.151483168 1.135256733 1.204439984 1.322118772 0.042024857 0.209928244 1.786874778 4.811165934 0.105692374 0.105625972 7.06E-07 6.151483168 0.117678788 AEHMETNAVGPS(ph)PSSDTR ddPTM_HeLa_A486_30min_R1 3 AEHMETNAVGPSPSSDTR 18 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEHMETNAVGPS(0.792)PS(0.155)S(0.048)DT(0.005)R;AEHMETNAVGPS(0.962)PS(0.019)S(0.019)DT(0.001)R;AEHMETNAVGPS(0.948)PS(0.043)S(0.01)DTR ;; 152.89 2.37E-08 1209364000 615312 720943 680355 240466 854109 672537 770410 799450 616244 676807 TRUE FALSE FALSE 572181.8063 663812.8511 943806.6765 559817.0005 746978.685 589566.2228 577645.2694 617432.6869 669660.5261 507330.1219 1.127829359 1.3084436 1.86034031 1.103457052 1.472372037 1.162095837 1.138598409 1.217023512 1.319969971 1 18.9525653 -6.275017403 23.81185151 1.179292793 1.382753779 0.194215946 0.209749093 759.0028623 1331061.964 0.073681979 0.065380754 5.31E-07 6.275017403 0.203460986 AEIEKS(ph)PGGGR ddPTM_HeLa_A485_30min_R1 1 AEIEKSPGGGR 11 1 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 0 AEIEKS(1)PGGGR 89.923 0.0013628 582670000 192600 186550 174960 274480 305030 251220 355570 402970 221190 371420 TRUE FALSE FALSE 235443.2055 208365.3997 239684.9847 289474.1474 274660.1422 264373.4907 279599.5648 304140.9757 265580.8041 278831.8295 0.844391424 0.747279821 0.859604103 1.038167515 0.985038698 0.948146742 1.002753399 1.090768497 0.95247664 1 18.08903573 -5.108994027 4.016499319 1.002872055 0.796558012 0.787907807 0.044752767 0.096369959 2.68793675 0.012367236 0.022989014 7.78E-06 5.108994027 -0.206314042 AEIEKS(ph)PGGGR ddPTM_HeLa_A486_30min_R1 1 AEIEKSPGGGR 11 1 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 0 AEIEKS(1)PGGGR 79.394 0.0036674 291930000 209130 220980 139800 135980 267040 259520 334240 324160 187430 302060 TRUE FALSE FALSE 194471.0669 203468.74 193934.304 316568.312 233545.3532 227503.061 250609.6168 250355.8444 203676.5833 226422.2099 0.858886887 0.89862536 0.856516258 1.398132772 1.031459561 1.004773609 1.106824356 1.105703563 0.899543306 1 17.78865595 AEIKEMLAS(ph)DDEEDVSSK ddPTM_HeLa_A485_30min_R1 2 AEIKEMLASDDEEDVSSK 18 1 E7ETM8;Q0ZGT2-4 E7ETM8 NEXN Nexilin 1 0 AEIKEMLAS(1)DDEEDVSSK;AEIKEMLAS(1)DDEEDVSSK ; 184.76 3.76E-18 1095920000 327798 356704 219449 447244 620320 582220 1021030 1262560 359335 707290 TRUE FALSE FALSE 400715.5342 398417.4299 300632.3171 471675.8072 558558.7627 612704.1389 802878.5995 952915.1804 431450.2385 530975.6197 0.754677841 0.750349762 0.566188552 0.888319143 1.051948041 1.153921416 1.512081854 1.794649594 0.812561297 1 19.01828609 -5.935900656 1.554890134 1.331429255 0.69972473 0.465449617 0.260582542 0.309611991 1.539449753 0.101287417 0.118734895 1.16E-06 5.935900656 -0.631704525 AEIKEMLAS(ph)DDEEDVSSK ddPTM_HeLa_A486_30min_R1 3 AEIKEMLASDDEEDVSSK 18 1 E7ETM8;Q0ZGT2-4 E7ETM8 NEXN Nexilin 1 0 AEIKEMLAS(1)DDEEDVSSK;AEIKEMLAS(1)DDEEDVSSK;AEIKEMLAS(1)DDEEDVSSK ;; 264.97 2.09E-58 1303280000 489890 380576 235818 401498 591560 563220 989440 918690 290012 820040 TRUE FALSE FALSE 455551.2408 350417.7717 327133.045 934707.6346 517361.0287 493735.6428 741871.6468 709524.3419 315150.4737 614696.6464 0.741099278 0.570066184 0.532186155 1.52059986 0.841652597 0.803218377 1.206890669 1.154267468 0.512692684 1 19.22951509 AEIS(ph)FEDRK ddPTM_HeLa_A485_30min_R1 3 AEISFEDRK 9 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 AEIS(1)FEDRK;AEIS(1)FEDRK;AEIS(1)FEDRK ;; 155.48 2.36E-05 1722070000 1445090 1262260 942540 1989450 1557380 1324110 1903880 1715840 1244040 2566050 TRUE FALSE FALSE 1766545.285 1409870.327 1291224.768 2098128.616 1402321.779 1393438.352 1497100.485 1295027.55 1493707.417 1926380.96 0.917028003 0.731875136 0.670285263 1.089155603 0.727956623 0.723345164 0.777157019 0.672259318 0.77539565 1 20.87746161 AEIS(ph)FEDRK ddPTM_HeLa_A486_30min_R1 4 AEISFEDRK 9 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 AEIS(1)FEDRK;AEIS(1)FEDRK;AEIS(1)FEDRK;AEIS(1)FEDRK ;;; 136.96 0.00010037 2441980000 2548370 2667340 1423080 1335660 2375260 2899100 3439480 3382730 2082050 3617920 TRUE FALSE FALSE 2369742.423 2455970.264 1974134.687 3109483.981 2077332.742 2541438.518 2578885.725 2612556.223 2262523.77 2711969.283 0.873808725 0.905604012 0.727934014 1.146577876 0.765986826 0.937119212 0.950927336 0.963342852 0.834273376 1 21.37090941 -8.758065815 0.014226849 1.893997454 2.51E-06 0.068850136 0.110138128 3983.89223 20.01421552 1389.249938 1273.401773 1.75E-09 8.758065815 -1.893994945 AEIS(ph)SIRENK ddPTM_HeLa_A485_30min_R1 1 AEISSIRENK 10 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 AEIS(0.586)S(0.414)IRENK 116.24 0.00012353 0 140870 113120 89554 138830 147270 107240 171550 133590 103830 228050 TRUE FALSE FALSE 172206.0455 126348.4 122683.7513 146413.9314 132607.2817 112854.9206 134896.9411 100826.843 124667.7286 171201.3319 1.005868608 0.738010613 0.716605121 0.855214908 0.774569217 0.659194174 0.787943292 0.588937258 0.728193684 1 17.3853344 -4.260084143 24.2319323 0.747764643 1.00586874 0.318748022 0.105839969 83.93803134 1500577.804 0.025015776 0.151098693 5.49E-05 4.260084143 0.258104097 AEIS(ph)SIRENK ddPTM_HeLa_A486_30min_R1 2 AEISSIRENK 10 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 AEIS(0.5)S(0.5)IRENK;AEIS(0.611)S(0.389)IRENK ; 138.89 1.14E-05 304780000 448040 496900 287510 209290 470040 523390 601040 620080 421120 645980 TRUE FALSE FALSE 416634.7097 457523.8343 398841.5718 487237.6969 411083.2003 458819.4632 450653.4348 478901.3203 457623.0207 484222.4034 0.860420143 0.944863003 0.823674347 1.006227084 0.848955351 0.947538693 0.930674483 0.989011076 0.94506784 1 18.8853103 -6.854362044 0.349663688 1.004289397 0.876212397 0.321288995 0.050558728 1.70906429 0.549344643 0.061092525 0.077402295 1.40E-07 6.854362044 -0.128077 AEISFEDRK ddPTM_HeLa_A485_30min_R1 4 AEISFEDRK 9 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 157.96 4.75E-06 491413000 463345 534208 414444 645940 662449 653066 821639 855649 618876 1004554 FALSE FALSE TRUE 566414.4967 596678.9786 567764.0821 681226.0666 596493.2516 687259.5259 646089.1155 645799.7411 743078.7365 754137.1752 0.751076217 0.791207486 0.752865792 0.903318506 0.790961209 0.911318986 0.856726252 0.856342536 0.985336303 1 19.52446744 -1.00003484 0.08944926 1.122722195 0.068488896 0.71257572 0.045706908 82.79613522 0.53411675 0.829907399 10.71370669 0.099991978 1.00003484 -1.054233299 AEISFEDRK ddPTM_HeLa_A486_30min_R1 2 AEISFEDRK 9 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 ; ; 160.36 3.36E-05 463390000 636630 713970 504240 349420 987670 907640 1148840 1110870 720000 1224050 FALSE FALSE TRUE 592005.5246 657392.417 699495.232 813467.4187 863787.2189 795664.605 861388.0808 857949.1511 782410.1797 917539.9128 0.645209561 0.716472829 0.76235946 0.886574423 0.941416506 0.867171655 0.938801755 0.935053766 0.852726044 1 19.80741139 -5.029992044 1.431474274 0.920217422 0.654870015 0.858250396 0.04034959 0.157891606 0.598510323 0.012304476 0.039871387 9.33E-06 5.029992044 -0.265347407 AEISS(ph)IR ddPTM_HeLa_A485_30min_R1 3 AEISSIR 7 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 AEIS(0.014)S(0.986)IR;AEIS(0.003)S(0.997)IR;AEIS(0.002)S(0.998)IR ;; 133.98 0.0016197 1269650000 2247670 2502880 2207580 1834710 1969600 1953860 2113230 1734760 1651990 2204130 TRUE FALSE FALSE 2747656.437 2795570.044 3024255.707 1934935.562 1773499.708 2056161.088 1661721.147 1309307.39 1983529.24 1654680.955 1.660535482 1.689491884 1.827697175 1.169370782 1.071807651 1.242632957 1.004254713 0.791274829 1.198738182 1 20.65812164 -5.351052725 4.366356604 1.054283624 1.721996642 0.857745563 0.123215927 0.080584687 2.714897111 0.037030887 0.056698804 4.46E-06 5.351052725 0.667713018 AEISS(ph)IR ddPTM_HeLa_A486_30min_R1 4 AEISSIR 7 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 AEIS(0.011)S(0.989)IR;AEIS(0.019)S(0.981)IR;AEIS(0.002)S(0.998)IR;AEIS(0.017)S(0.983)IR ;;; 142.04 0.00032201 1559070000 4741880 5598810 3934300 1455130 4282920 4573340 4781920 4516920 4454340 5350430 TRUE FALSE FALSE 4409498.699 5155139.905 5457766.324 3387616.178 3745716.237 4009127.809 3585433.038 3488515.92 4840445.778 4010647.503 1.099448081 1.285363498 1.360819249 0.844655676 0.933943019 0.999621085 0.8939786 0.869813644 1.20689883 1 21.93540374 -5.261116305 24.99999999 0.956003703 1.252225603 0.571133787 0.112773721 19.83215021 1534591.88 0.030843463 0.049469396 5.48E-06 5.261116305 0.2962219 AEITFDDHK ddPTM_HeLa_A485_30min_R1 1 AEITFDDHK 9 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95 O75369-8 FLNB Filamin-B 0 0 85.807 0.015952 15935000 13308 16870 17976 14083 25300 13398 19416 18944 15251 20385 FALSE FALSE TRUE 16268.31869 18842.79975 24626.07044 14852.31863 22781.04317 14099.49856 15267.61299 14297.9543 18311.73581 15303.39466 1.06305294 1.231282351 1.609190052 0.970524446 1.488626783 0.921331435 0.997661847 0.934299521 1.196579989 1 13.90156409 -6.28040143 24.96923104 1.005098725 1.272168158 0.332591651 0.185904212 949.9610309 1250904.969 0.063237199 0.055860183 5.24E-07 6.28040143 0.267069433 AEKDRES(ph)LRR ddPTM_HeLa_A486_30min_R1 1 AEKDRESLRR 10 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 AEKDRES(1)LRR 94.551 0.014743 222070000 94862 89968 70365 52227 103630 115440 127350 154880 83475 147580 TRUE FALSE FALSE 88212.66367 82838.60802 97612.21244 121587.0954 90631.75909 101198.1865 95485.68303 119617.205 90710.68021 110625.0074 0.797402556 0.748823525 0.882370223 1.099092314 0.819270084 0.914785805 0.863147359 1.081285397 0.819983495 1 16.75531803 -4.913480098 5.029182795 0.940018591 0.776125999 0.342217093 0.092693458 0.217894249 9.378486825 0.023549746 0.051011929 1.22E-05 4.913480098 -0.163892591 AELEEMEEVHPS(ph)DEEEEDATK ddPTM_HeLa_A485_30min_R1 1 AELEEMEEVHPSDEEEEDATK 21 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 AELEEMEEVHPS(1)DEEEEDATK 216.89 1.43E-35 420920000 250820 230420 129750 336430 146540 246290 278010 224980 152750 385300 TRUE FALSE FALSE 306614.0437 257365.6146 177749.9243 354808.319 131949.9631 259185.3636 218610.8924 169803.3022 183405.5239 289251.8009 1.060024666 0.889763223 0.614516224 1.226641694 0.456176807 0.896054451 0.755780575 0.587043198 0.634068736 1 18.14196642 -5.770240354 24.9999845 0.711312547 0.919794085 0.223419024 0.203437439 310.8384395 882963.2945 0.060805738 0.069978504 1.70E-06 5.770240354 0.208481539 AELEEMEEVHPS(ph)DEEEEDATK ddPTM_HeLa_A486_30min_R1 1 AELEEMEEVHPSDEEEEDATK 21 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 AELEEMEEVHPS(1)DEEEEDATK 199.75 1.48E-26 544320000 387330 359700 166870 135030 226590 373980 420000 324510 284250 625240 TRUE FALSE FALSE 360180.1672 331196.062 231486.5329 314356.664 198168.9693 327842.15 314911.5577 250626.157 308889.0189 468675.8344 0.76850595 0.706663407 0.493916084 0.670733673 0.422827368 0.699507263 0.671917634 0.534753744 0.659067518 1 18.83823088 -8.042495766 21.55035514 1.000000003 0.617683181 0.552537987 0.101626902 1075.836715 545576.1529 0.097356472 0.025137333 9.07E-09 8.042495766 -0.382316822 AELEEMEEVHPS(ph)DEEEEDATKAEGFYQK ddPTM_HeLa_A485_30min_R1 1 AELEEMEEVHPSDEEEEDATKAEGFYQK 28 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 AELEEMEEVHPS(1)DEEEEDATKAEGFYQK 101.88 0.00048432 156110000 37398 38581 36929 67029 64776 55861 71570 83775 49536 91696 TRUE FALSE FALSE 45717.05608 43092.71234 50590.57384 70690.62454 58326.674 58785.79558 56278.48483 63229.0499 59477.42083 68837.87474 0.664126489 0.626002945 0.734923529 1.026914686 0.847304979 0.853974586 0.817551167 0.918521238 0.864021748 1 16.07091494 -5.043341726 5.924545607 0.892562919 0.652079277 0.735300914 0.064173509 0.095935852 8.820126163 0.017163133 0.03120915 9.05E-06 5.043341726 -0.240483642 AELGMGDSTSQS(ph)PPIKR ddPTM_HeLa_A485_30min_R1 4 AELGMGDSTSQSPPIKR 17 1 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 0 AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTS(0.001)QS(0.999)PPIKR ;;; 213.93 2.96E-26 2120130000 1012100 1177550 1044600 1295550 1417170 1264070 1713940 1633000 1080180 1905990 TRUE FALSE FALSE 1237238.153 1315254.229 1431041.009 1366322.616 1276071.579 1330254.751 1347742.717 1232504.19 1296962.218 1430861.77 0.864680418 0.919204256 1.000125267 0.954894906 0.891820304 0.929687814 0.941909796 0.861371948 0.906420344 1 20.44845288 -5.748339864 24.98397771 0.916330004 0.938288856 0.007499558 0.04629759 867.7335647 1654974.741 0.013990831 0.017950025 1.79E-06 5.748339864 0.021958852 AELGMGDSTSQS(ph)PPIKR ddPTM_HeLa_A486_30min_R1 3 AELGMGDSTSQSPPIKR 17 1 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 0 AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR;AELGMGDSTSQS(1)PPIKR ;; 223.51 1.81E-34 2223580000 895940 927440 627010 352294 1014510 919890 1084260 1127230 817050 1100870 TRUE FALSE FALSE 833139.2326 853946.2767 869805.0639 820158.236 887260.6959 806403.3246 812966.6799 870584.3363 887872.5519 825204.9865 1.009614879 1.034829274 1.054047271 0.993884246 1.075200357 0.977215768 0.985169374 1.054991609 1.075941816 1 19.65439301 AELPGSS(ph)SPLLAQPR ddPTM_HeLa_A485_30min_R1 2 AELPGSSSPLLAQPR 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 AELPGS(0.039)S(0.481)S(0.481)PLLAQPR;AELPGS(0.078)S(0.461)S(0.461)PLLAQPR ; 151.74 4.56E-08 405530000 282732 410060 339230 326508 430740 351245 429780 471570 358496 517550 TRUE FALSE FALSE 345624.758 458012.95 464725.2935 344344.3053 387854.0132 369635.6451 337953.992 355916.7181 430442.8589 388534.3098 0.889560456 1.178822406 1.19609847 0.886264859 0.998249069 0.951359084 0.869817629 0.916049649 1.107863187 1 18.56768248 -5.268905549 24.90863719 0.955178579 1.097226642 0.248900521 0.100158194 675.1022949 2252276.02 0.027998725 0.042444616 5.38E-06 5.268905549 0.142048063 AELPGSSS(ph)PLLAQPR ddPTM_HeLa_A486_30min_R1 1 AELPGSSSPLLAQPR 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 AELPGS(0.001)S(0.182)S(0.817)PLLAQPR 258.41 2.53E-50 172370000 192090 251430 196250 70765 273080 205220 230720 202800 198140 234100 TRUE FALSE FALSE 178625.483 231505.7711 272243.2558 164744.4963 238827.76 179902.0429 172991.4157 156626.8671 215314.9347 175479.8363 1.017925972 1.319272778 1.55142187 0.938822943 1.360998307 1.025200654 0.985819336 0.892563331 1.2270067 1 17.42094574 -6.288777635 20.01569649 1.01688392 1.243046629 0.258731656 0.178599026 85.21825185 62390.92339 0.062095407 0.054808082 5.14E-07 6.288777635 0.226162709 AELVLIDEDDEKS(ph)LR ddPTM_HeLa_A485_30min_R1 3 AELVLIDEDDEKSLR 15 1 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 AELVLIDEDDEKS(1)LR;AELVLIDEDDEKS(1)LR;AELVLIDEDDEKS(1)LR ;; 199.16 1.45E-25 256994000 341601 233709 137747.5 544795 200381 285127 438984 322483 234350 1090290 TRUE FALSE FALSE 417588.9639 261039.2346 188706.0324 574555.7714 180430.3641 300055.8088 345191.4822 243393.5386 281381.8954 818500.7683 0.510187626 0.318923628 0.230550831 0.701961188 0.220440067 0.36659197 0.421736296 0.29736507 0.343777192 1 19.64262425 -10.20628656 3.320034667 1.001423227 0.376240312 0.655594664 0.13500313 27235488.46 40803586.12 408577.1278 0.032904248 6.22E-11 10.20628656 -0.625182915 AELVLIDEDDEKS(ph)LR ddPTM_HeLa_A486_30min_R1 3 AELVLIDEDDEKSLR 15 1 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 AELVLIDEDDEKS(1)LR;AELVLIDEDDEKS(1)LR;AELVLIDEDDEKS(1)LR ;; 195.78 3.40E-19 333584000 311938 339225 201107 215627 353315 455561 482176 404085 424251 919270 TRUE FALSE FALSE 290072.757 312343.5756 278981.0162 501990.5532 308998.9382 399358.5156 361530.4649 312083.6666 461025.4183 689078.8086 0.420957303 0.453277001 0.404860827 0.728495126 0.44842322 0.579554197 0.524657645 0.452899817 0.669045997 1 19.39430946 -14 0.216626396 3.417208061 0.454942679 0.714980997 0.094534275 81.25171681 0.812398956 85.40209983 0.187989405 1.00E-14 14 -2.962265382 AENGERS(ph)DLEEDNER ddPTM_HeLa_A485_30min_R1 2 AENGERSDLEEDNER 15 1 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 0 AENGERS(1)DLEEDNER;AENGERS(1)DLEEDNER ; 273.77 4.83E-57 2402000000 1186140 1453450 1011780 1038940 987300 1099810 1180080 1210310 884090 1231260 TRUE FALSE FALSE 1449992.751 1623418.334 1386079.526 1095694.661 889000.9454 1157394.351 927946.2676 913479.5748 1061518.754 924329.5417 1.568696753 1.756319863 1.499551257 1.185393966 0.96177922 1.252144715 1.00391281 0.988261798 1.14842024 1 19.81804777 -5.22810533 2.494293711 1.065112794 1.660822146 0.873651068 0.09454732 0.088620142 1.083462778 0.026758054 0.050727819 5.91E-06 5.22810533 0.595709352 AENGERS(ph)DLEEDNER ddPTM_HeLa_A486_30min_R1 2 AENGERSDLEEDNER 15 1 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 0 AENGERS(1)DLEEDNER;AENGERS(1)DLEEDNER ; 258.13 3.47E-49 1936840000 1086420 1100880 632990 272500 795840 859900 897070 846580 938140 1104860 TRUE FALSE FALSE 1010267.568 1013642.259 878100.6801 634393.7714 696018.3263 753814.2808 672613.5978 653832.2147 1019458.731 828195.8646 1.219841358 1.223916108 1.060257262 0.765994855 0.840403045 0.910188414 0.812143149 0.789465684 1.230939171 1 19.65961247 -4.979515456 3.769445537 0.891716614 1.217180858 0.490375401 0.127939275 0.168936901 5.27225644 0.03428211 0.073545553 1.05E-05 4.979515456 0.325464244 AENGTGSS(ph)PRGPGCSLR ddPTM_HeLa_A485_30min_R1 1 AENGTGSSPRGPGCSLR 17 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 0 AENGT(0.004)GS(0.028)S(0.967)PRGPGCSLR 70.453 0.0037392 563950000 39304 99990 102190 42432 163210 145680 145940 274950 79720 57527 TRUE FALSE FALSE 48047.0392 111682.9607 139994.3335 44749.95272 146960.2393 153307.5795 114758.7268 207518.0814 95719.07276 43186.57761 1.112545653 2.586057217 3.241616753 1.036200486 3.40291469 3.549889527 2.657277634 4.805152269 2.216407923 1 15.39829537 -4.277121969 3.5144737 2.867236348 0.929960553 0.156110046 1.093699352 0.460558084 10.12454602 0.269870857 2.316238892 5.28E-05 4.277121969 -1.937275796 AENGTGSS(ph)PRGPGCSLR ddPTM_HeLa_A486_30min_R1 1 AENGTGSSPRGPGCSLR 17 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 0 AENGTGS(0.008)S(0.992)PRGPGCSLR 158.15 4.34E-09 253780000 67225 67651 118110 43531 237960 73606 142990 159740 73378 82365 TRUE FALSE FALSE 62512.87465 62290.08838 163845.3551 101342.3679 208112.8379 64525.24009 107212.3896 123370.6891 79738.46412 61740.26789 1.012513823 1.008905379 2.653784324 1.641430648 3.370779639 1.045107874 1.736506712 1.998220826 1.291514709 1 15.91392412 -7.928088932 4.289654361 1.005604609 1.827022645 0.126482829 0.713323812 0.395925406 13.34960126 0.68935722 0.181022391 1.18E-08 7.928088932 0.821418035 AENKGIS(ph)PVVSEHRK ddPTM_HeLa_A485_30min_R1 2 AENKGISPVVSEHRK 15 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 AENKGIS(1)PVVSEHRK;AENKGIS(1)PVVSEHRK ; 126.84 1.10E-05 297610000 37518 85493 48505 26530 105380 103290 133140 258240 56746 47884 TRUE FALSE FALSE 45863.74966 95490.66266 66449.01796 27979.26672 94887.99719 108698.1047 104693.5513 194906.2351 68134.40169 35947.40004 1.275857214 2.656399699 1.848506926 0.778339092 2.639634496 3.023809916 2.912409555 5.421984201 1.895391645 1 15.13359981 -5.967068822 8.9024839 3.098462272 1.72270953 0.18540898 1.151924254 0.408111197 101.4669087 0.349972329 0.395484789 1.08E-06 5.967068822 -1.375752741 AENNS(ph)EVGASGYGVPGPTWDR ddPTM_HeLa_A485_30min_R1 2 AENNSEVGASGYGVPGPTWDR 21 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 AENNS(0.999)EVGAS(0.001)GYGVPGPTWDR;AENNS(1)EVGASGYGVPGPTWDR ; 177.03 1.60E-14 236250000 131554 143796 169902 129107 183553 136778 163038 167809 140176 164631 TRUE FALSE FALSE 160817.7334 160611.6913 232755.82 136159.7885 165277.8188 143939.4846 128203.5994 126653.5796 168308.0374 123591.5215 1.301203606 1.299536484 1.883266887 1.101691984 1.337290915 1.164638827 1.037317106 1.024775633 1.361808928 1 16.91522025 AENNS(ph)EVGASGYGVPGPTWDR ddPTM_HeLa_A486_30min_R1 2 AENNSEVGASGYGVPGPTWDR 21 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 AENNS(1)EVGASGYGVPGPTWDR;AENNS(0.997)EVGAS(0.003)GYGVPGPTWDR ; 286.97 4.64E-77 135710000 139368 159349 134694 56327 182926 145423 150725 172381 141144 153853 TRUE FALSE FALSE 129599.0229 146721.6049 186851.124 131132.1026 159981.7154 127482.1888 113012.0108 133133.6094 153378.4756 115327.2074 1.123750638 1.272220218 1.620182507 1.137043943 1.387198381 1.10539561 0.979924975 1.154398969 1.329941815 1 16.81537338 -6.273367192 24.09878767 1.115206731 1.313924095 0.275231045 0.157376073 655.0031429 1323354.759 0.055933247 0.049741042 5.33E-07 6.273367192 0.198717364 AENSAALGKPTAGTTDAGEAAK(ac)ILAEK ddPTM_HeLa_A485_30min_R1 1 AENSAALGKPTAGTTDAGEAAKILAEK 27 2 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 0 1 AENSAALGKPTAGTTDAGEAAK(1)ILAEK 218.67 7.37E-43 92086000 6116.2 6029.8 4789.1 7480.7 9822.7 6249.8 8971.7 11079 6103.4 12205 FALSE TRUE FALSE 7476.727589 6734.932658 6560.787381 7889.351699 8844.717498 6577.029864 7054.823003 8361.857879 7328.296396 9162.518116 0.816012312 0.735052588 0.71604632 0.861046232 0.965315144 0.71781903 0.769965517 0.912615699 0.799812486 1 13.16152843 -14 0.155715702 1.696652144 0.755930019 0.365689663 0.077336983 154.9479166 1.404976412 33.28906882 0.374540998 1.00E-14 14 -0.940722125 AEPDESNAR ddPTM_HeLa_A485_30min_R1 1 AEPDESNAR 9 0 F8VZ29;F8VSD4;F8VV71;P61088;Q5JXB2 F8VZ29 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like 0 0 105.52 0.012101 8662600 7164.6 7554.7 7624.6 6319.5 11006 9311.4 9759.6 9531.8 8358.2 9505.2 FALSE FALSE TRUE 8758.340552 8438.156448 10445.25683 6664.718283 9910.203996 9798.930506 7674.381731 7194.111105 10035.61407 7135.72857 1.227392615 1.18252206 1.463796825 0.933992684 1.388814597 1.373220745 1.075486778 1.00818172 1.406389547 1 12.80084502 -13.93856359 0.203914611 1.32E-11 1.257820663 0.12902917 0.172488162 293.8198111 2.984472825 119.981946 0.391419161 1.15E-14 13.93856359 1.257820663 AEPEKNGEVVHTPET(ph)SV ddPTM_HeLa_A485_30min_R1 1 AEPEKNGEVVHTPETSV 17 1 O15427 O15427 SLC16A3 Monocarboxylate transporter 4 1 0 AEPEKNGEVVHTPET(0.5)S(0.5)V 97.488 0.00066188 833180000 645660 707010 294780 618680 463800 877300 1062600 1238500 525230 1392600 TRUE FALSE FALSE 789284.8395 789688.6693 403831.3888 652476.9218 417622.4435 923234.0714 835566.8294 934755.9331 630638.8433 1045450.449 0.754971066 0.755357339 0.386275016 0.624110806 0.399466511 0.88309692 0.799240969 0.894117874 0.603222127 1 19.99569325 -6.282250629 24.8400383 0.827024547 0.584793618 0.416389413 0.148922658 805.8895335 961896.2117 0.05240191 0.046263715 5.22E-07 6.282250629 -0.242230929 AEPEKNGEVVHTPETS(ph)V ddPTM_HeLa_A485_30min_R1 1 AEPEKNGEVVHTPETSV 17 1 O15427 O15427 SLC16A3 Monocarboxylate transporter 4 1 0 AEPEKNGEVVHTPET(0.098)S(0.902)V 161.51 3.97E-12 611030000 670170 809380 336340 724130 491640 1003300 1158300 1336300 671530 1416900 TRUE FALSE FALSE 819247.0044 904029.9503 460766.1623 763687.3883 442690.5953 1055831.237 910819.7426 1008570.33 806299.9114 1063692.906 0.770191283 0.849897508 0.433175929 0.717958523 0.416182709 0.99260908 0.856280734 0.94817811 0.75801945 1 20.02065027 -6.281786152 24.99658028 0.904357568 0.642402747 0.479562727 0.142346884 772.058838 948492.9381 0.04985883 0.044023625 5.23E-07 6.281786152 -0.261954821 AEPHFLSILQHLLLVR ddPTM_HeLa_A485_30min_R1 2 AEPHFLSILQHLLLVR 16 0 A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610;H9KV28 A0A2R8Y5N1 DIAPH1 Protein diaphanous homolog 1 0 0 ; ; 210.9 1.90E-19 46688000 31951 31427 40353 26064 36949 23452 34039 25578 24446 52912 FALSE FALSE TRUE 39058.38972 35102.11427 55281.25393 27487.81032 33270.22782 24679.91046 26766.28958 19304.9554 29352.08797 39722.01217 0.983293332 0.883694263 1.391703262 0.692004479 0.837576598 0.621315717 0.673840224 0.486001447 0.738937591 1 15.27765109 -5.307982581 24.77485041 0.698656617 1.065976752 0.470005327 0.175998391 300.8646814 160148.984 0.048477264 0.071903626 4.92E-06 5.307982581 0.367320135 AEPHFLSILQHLLLVR ddPTM_HeLa_A486_30min_R1 2 AEPHFLSILQHLLLVR 16 0 A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610;H9KV28 A0A2R8Y5N1 DIAPH1 Protein diaphanous homolog 1 0 0 ; ; 195.6 3.43E-18 31998400 26709.7 34401 31139.4 8048.6 35295 30681.9 33690 29259.4 31739.2 29117 FALSE FALSE TRUE 24837.48796 31674.93947 43197.40962 18737.54755 30867.97199 26896.67913 25260.40566 22597.67335 34490.37941 21825.91368 1.13798159 1.451253768 1.979179898 0.85850003 1.414280861 1.232327751 1.157358452 1.035359787 1.580249052 1 14.41375443 -5.276022364 24.99702189 1.194731471 1.515650018 0.246944018 0.2715967 1149.556447 1970477.947 0.075014787 0.111811967 5.30E-06 5.276022364 0.320918548 AEPPKAPEQEQAAPGPAAGGEAPK ddPTM_HeLa_A485_30min_R1 1 AEPPKAPEQEQAAPGPAAGGEAPK 24 1 P80723 P80723 BASP1 Brain acid soluble protein 1 0 0 192.58 2.06E-28 26050000 14054 9030.6 4558.3 23044 9479.7 14311 22558 18024 9760.3 44670 FALSE FALSE TRUE 17180.26381 10086.65011 6244.604857 24302.83537 8535.867783 15060.30183 17738.29902 13603.58574 11719.10268 33534.59109 0.512314695 0.300783453 0.186213836 0.724709459 0.254539194 0.449097524 0.52895528 0.405658316 0.349463116 1 15.03336239 -10.9680938 2.411718988 1.493077059 0.41132828 0.591028438 0.146631372 24241101.02 10615580.9 66760990.83 0.037565669 1.08E-11 10.9680938 -1.081748779 AEPPKPEVVDSTESIPVS(ph)DEDSDAMVDDPNDEDFVPFRPR ddPTM_HeLa_A485_30min_R1 1 AEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 40 2 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 AEPPKPEVVDSTES(0.004)IPVS(0.978)DEDS(0.018)DAMVDDPNDEDFVPFRPR 111.51 3.80E-06 276270000 44398 43950 48752 51909 68327 44788 58209 58719 32875 61492 TRUE FALSE FALSE 54274.18193 49089.57019 66787.39354 54744.65723 61524.12397 47133.03042 45772.17163 44318.07318 39472.71095 46163.17608 1.175702942 1.063392391 1.446767732 1.185894513 1.332753272 1.021009264 0.991529949 0.96003085 0.85506922 1 15.49445487 -6.416705618 4.312042823 0.954195905 1.238699687 0.649684411 0.10189105 0.152190037 4.757158594 0.037887598 0.032758501 3.83E-07 6.416705618 0.284503782 AEPPKPEVVDSTESIPVS(ph)DEDSDAMVDDPNDEDFVPFRPR ddPTM_HeLa_A486_30min_R1 2 AEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 40 2 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 AEPPKPEVVDSTES(0.005)IPVS(0.938)DEDS(0.056)DAMVDDPNDEDFVPFRPR;AEPPKPEVVDSTESIPVS(1)DEDSDAMVDDPNDEDFVPFRPR ; 213.06 4.06E-31 258620000 47655 52124 34729.2 27740.8 55613 57441 63679 56858 42071 62904 TRUE FALSE FALSE 44314.63059 47993.50441 48177.27632 64581.98434 48637.49897 50354.51344 47745.84067 43912.6746 45717.74815 47152.42896 0.939816497 1.017837373 1.021734773 1.36964279 1.03149509 1.067909216 1.012584966 0.931291888 0.969573555 1 15.52504447 -6.870716252 2.429399417 0.962810536 1.083260809 0.167566894 0.107707269 0.533711232 6.383814273 0.057134229 0.034960045 1.35E-07 6.870716252 0.120450273 AEPSEVDMNS(ph)PK ddPTM_HeLa_A485_30min_R1 2 AEPSEVDMNSPK 12 0 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 AEPSEVDMNS(1)PK;AEPSEVDMNS(1)PK ; 233.28 2.80E-24 1013930000 479240 315300 287540 989740 695480 350480 643980 568630 402500 1324410 TRUE FALSE FALSE 585845.2846 352171.5923 393913.0115 1043806.99 626235.5692 368830.5909 506388.4122 429172.6009 483278.0581 994258.961 0.589228066 0.354205098 0.39618754 1.049834129 0.629851572 0.370960288 0.509312395 0.431650725 0.486068597 1 19.92326213 -10.08541133 4.546367332 1.000030679 0.535114617 0.344673012 0.19224755 137972451.4 1.151214784 46661.91896 0.049441816 8.21E-11 10.08541133 -0.464916062 AEPSEVDMNS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AEPSEVDMNSPK 12 0 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 AEPSEVDMNS(1)PK;AEPSEVDMNS(1)PK;AEPSEVDMNS(1)PK ;; 194.13 1.40E-13 967270000 347110 467960 286150 367140 451510 529840 761920 640900 360620 665770 TRUE FALSE FALSE 322779.3815 430877.1453 396954.9434 854720.4742 394877.4056 464473.7278 571279.5572 494981.0607 391878.832 499056.8586 0.646778771 0.863382875 0.795410255 1.712671531 0.791247328 0.930703025 1.144718377 0.991832999 0.785238847 1 18.92884467 -5.043077624 24.99997421 1.055223804 0.77365767 0.210378491 0.250907275 717.5238315 416412.0233 0.06801595 0.117818479 9.06E-06 5.043077624 -0.281566134 AEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_HeLa_A485_30min_R1 2 AEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 32 1 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK ; 172.14 7.09E-15 1295320000 357252 417782 236789 236596 630672 465102 785767 915210 385210 691640 TRUE FALSE FALSE 436721.4749 466637.9707 324387.1047 249520.6404 567880.0813 489454.0215 617881.4613 690753.3125 462518.1136 519226.8767 0.841099516 0.898716903 0.624750219 0.480561873 1.093703171 0.942659256 1.190002847 1.330349686 0.890782304 1 18.98600554 -5.787381496 24.86508402 1.090275369 0.718489508 0.557349145 0.158190531 161.6663804 154953.6125 0.051755276 0.058704715 1.63E-06 5.787381496 -0.37178586 AEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_HeLa_A486_30min_R1 4 AEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 32 1 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;AEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK ;;; 278.84 6.70E-78 2269890000 689524 516674 336353 46727 733184 542951 936538 866497 481355 519414 TRUE FALSE FALSE 641191.9283 475730.8705 466597.8894 108782.8175 641221.2261 475967.2259 702206.2867 669214.5486 523079.239 389349.3536 1.646829313 1.221861206 1.198404171 0.279396425 1.646904561 1.222468258 1.803537826 1.718802259 1.343470162 1 18.57070571 AEQLVLSGADS(ph)DEDTSR ddPTM_HeLa_A485_30min_R1 4 AEQLVLSGADSDEDTSR 17 0 H7C1N2;J3KR05;O75128-2 H7C1N2 COBL Protein cordon-bleu 1 0 AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR ;;; 387.56 1.88E-135 1613470000 626019 828686 766086 677776 1035290 797099 928360 1008390 833240 982760 TRUE FALSE FALSE 765274.7668 925593.6191 1049493.091 714801.1867 932212.8925 838833.8711 730008.302 761080.7714 1000463.625 737776.0184 1.037272489 1.254572656 1.422509088 0.968859341 1.263544584 1.136976332 0.989471444 1.031587843 1.356053328 1 19.49282337 -5.272812039 24.98840621 1.110877462 1.239763549 0.145614788 0.145673171 1413.839368 3106536.336 0.040828177 0.061167707 5.34E-06 5.272812039 0.128886088 AEQLVLSGADS(ph)DEDTSR ddPTM_HeLa_A486_30min_R1 3 AEQLVLSGADSDEDTSR 17 0 H7C1N2;J3KR05;O75128-2 H7C1N2 COBL Protein cordon-bleu 1 0 AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR;AEQLVLSGADS(1)DEDTSR ;; 366.4 1.64E-119 1246180000 880780 1082760 851660 281118 1187710 939200 965110 1046840 906350 891180 TRUE FALSE FALSE 819041.8704 996958.1543 1181445.56 654456.9109 1038736.337 823331.0531 723629.2701 808497.3844 984913.1478 668022.7274 1.22606887 1.492401551 1.768570906 0.979692582 1.554941612 1.232489584 1.083240495 1.210284248 1.474370717 1 19.34953766 -5.858499775 1.070647843 1.211230378 1.450844564 0.143725359 0.228466667 1.019324526 2.501291393 0.104327668 0.142001369 1.39E-06 5.858499775 0.239614186 AEQPS(ph)PPNS(ph)DSGQDAHPDPDANPDAAR ddPTM_HeLa_A485_30min_R1 2 AEQPSPPNSDSGQDAHPDPDANPDAAR 27 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 0 AEQPS(1)PPNS(0.996)DS(0.004)GQDAHPDPDANPDAAR;AEQPS(1)PPNS(0.995)DS(0.005)GQDAHPDPDANPDAAR ; 174.9 2.44E-14 1199490000 272207 319550 386180 256986 476650 381720 450780 469890 345120 404750 TRUE FALSE FALSE 332758.508 356918.5928 529044.0523 271024.4945 429193.0524 401706.2689 354467.1705 354648.7407 414382.4184 303853.2739 1.095128921 1.174641261 1.741116841 0.891958448 1.412500997 1.322040286 1.166573478 1.167171037 1.363758281 1 18.21301531 -10.97579662 2.843782917 0.777112906 1.261196206 0.117069338 0.213691075 81905700.48 79104225.9 120504835.9 0.051021283 1.06E-11 10.97579662 0.4840833 AEQPS(ph)PPNS(ph)DSGQDAHPDPDANPDAAR ddPTM_HeLa_A486_30min_R1 1 AEQPSPPNSDSGQDAHPDPDANPDAAR 27 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 0 AEQPS(1)PPNS(0.998)DS(0.002)GQDAHPDPDANPDAAR 206.39 1.64E-28 774030000 254530 282220 276690 101480 348560 277960 293600 341860 249020 273110 TRUE FALSE FALSE 236688.7614 259855.8594 383831.778 236250.5685 304840.3546 243668.1213 220138.1746 264025.9408 270605.2541 204721.4784 1.156150118 1.269314102 1.874897451 1.154009684 1.489049205 1.190242095 1.07530571 1.289683637 1.321821512 1 17.64330295 -6.280796681 22.3071015 1.187259153 1.396026809 0.201654138 0.211268967 363.5173748 418909.4869 0.074660893 0.065998518 5.24E-07 6.280796681 0.208767656 AEREGEK(ac)K ddPTM_HeLa_A486_30min_R1 1 AEREGEKK 8 2 Q969S9-5;Q969S9-4;Q969S9-2;Q969S9-3;Q969S9 Q969S9-5 GFM2 "Ribosome-releasing factor 2, mitochondrial" 0 1 AEREGEK(1)K 75.738 0.031168 42215000 45081 100760 72688 50071 144320 129230 146250 144850 89885 100030 FALSE TRUE FALSE 41921.0547 92775.41064 100834.7403 116567.8184 126218.0399 113286.9165 109656.7031 111870.8171 97676.30417 74981.83691 0.559082792 1.237305119 1.344788877 1.554614067 1.683314854 1.510858111 1.462443542 1.491972212 1.302666195 1 16.19425355 -4.134553133 1.646907034 1.460806326 0.016135321 0.680597035 0.175308243 0.743047102 1.527068063 0.046712456 1.87718881 7.34E-05 4.134553133 -1.444671005 AERT(ph)PVSHPQR ddPTM_HeLa_A485_30min_R1 1 AERTPVSHPQR 11 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 AERT(1)PVSHPQR 109.83 0.00063701 47780000 10670 12805 11322 10011 18666 12304 15455 15954 14752 13372 TRUE FALSE FALSE 13043.50469 14302.43336 15510.47895 10557.87558 16807.5475 12948.21841 12152.91299 12041.25649 17712.59109 10038.60649 1.299334195 1.424742903 1.545082872 1.051727208 1.6742909 1.289842213 1.21061753 1.19949482 1.764447197 1 13.2932714 AERT(ph)PVSHPQR ddPTM_HeLa_A486_30min_R1 1 AERTPVSHPQR 11 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 AERT(1)PVSHPQR 92.039 0.0028098 49614000 13370 17543 10848 7920.4 20199 11930 16638 16680 11446 12434 TRUE FALSE FALSE 12432.83204 16152.82879 15048.63612 18439.09147 17665.45307 10458.1979 12474.99642 12882.32812 12438.1485 9320.445468 1.333931096 1.733053301 1.614583356 1.978348732 1.895344287 1.122070606 1.338454955 1.382157984 1.334501504 1 13.18618319 -6.263719989 24.99967987 1.265760499 1.721764876 0.600475471 0.193087838 156.9667581 1720636.329 0.068393429 0.063242759 5.45E-07 6.263719989 0.456004377 AES(ph)DGEEKEEVKEELGRPATLLWLIQK ddPTM_HeLa_A486_30min_R1 2 AESDGEEKEEVKEELGRPATLLWLIQK 27 3 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 0 AES(0.999)DGEEKEEVKEELGRPAT(0.001)LLWLIQK;AES(1)DGEEKEEVKEELGRPATLLWLIQK ; 115.84 0.00021387 395720000 177859 129535 31541 138457 59706 182076 262900 182010 88979 469570 TRUE FALSE FALSE 165392.0026 119270.1748 43754.5199 322334.8932 52217.11674 159613.3143 197119.6393 140570.2963 96691.77136 351986.6156 0.46988151 0.338848608 0.12430734 0.915758949 0.148349722 0.453464158 0.560020269 0.399362618 0.274702978 1 18.42516105 -10.77624645 2.735001447 1.143704864 0.41159412 0.406967841 0.213863283 69325185.52 55185156.65 66852430.29 0.050777339 1.67E-11 10.77624645 -0.732110744 DETFGEYS(ph)DNEEK ddPTM_HeLa_A486_30min_R1 2 DETFGEYSDNEEK 13 0 P32004-3;P32004-2;H3BLW5 P32004-3 L1CAM Neural cell adhesion molecule L1 1 0 DETFGEYS(1)DNEEK;DETFGEYS(1)DNEEK ; 276.59 1.38E-48 538630000 550030 458970 183778 258520 301700 675800 558650 437110 582430 1526400 TRUE FALSE FALSE 511475.7374 422599.5457 254941.7633 601847.6249 263857.9728 592426.667 418869.8612 337589.595 632915.5014 1144179.505 0.447024034 0.369347243 0.22281623 0.526008045 0.230608896 0.517774234 0.366087541 0.295049504 0.553161019 1 20.12588198 -8.098909374 3.903350002 0.999838412 0.372970902 0.784295446 0.099691886 0.185973824 6.127571409 0.090098621 0.023689339 7.96E-09 8.098909374 -0.62686751 AES(ph)GDS(ph)LGSEDRDLLYSIDAYR ddPTM_HeLa_A486_30min_R1 1 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 2 0 AES(1)GDS(0.852)LGS(0.148)EDRDLLYSIDAYR 84.365 0.0027759 12621000 15209 18136 13694 9829.1 23179 19813 25256 29403 14547 21094 TRUE FALSE FALSE 14142.92764 16698.83731 18996.68354 22882.64154 20271.67368 17368.6735 18936.68167 22708.57876 15807.94567 15811.9251 0.894446916 1.056091349 1.201414971 1.447176191 1.282049691 1.098454071 1.197620249 1.436167868 0.999748327 1 13.94872541 -4.547291962 2.553319585 1.230914585 0.899359194 0.304519527 0.147572775 0.351790791 4.128907695 0.038572828 0.190830773 2.84E-05 4.547291962 -0.331555391 AES(ph)GDSLGSEDRDLLYSIDAYR ddPTM_HeLa_A485_30min_R1 4 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 AES(0.859)GDS(0.12)LGS(0.021)EDRDLLYSIDAYR;AES(0.872)GDS(0.128)LGSEDRDLLYSIDAYR;AES(0.981)GDS(0.015)LGS(0.004)EDRDLLYSIDAYR;AES(0.985)GDS(0.007)LGS(0.007)EDRDLLYSIDAYR ;;; 220.05 3.50E-36 275865000 88242 107321 87713 95069 151337 103693 148433 178989 119643 167369 TRUE FALSE FALSE 107871.1285 119871.2574 120161.6887 100262.3787 136269.3569 109122.2051 116719.077 135091.6671 143654.2527 125646.9885 0.858525379 0.954032077 0.956343564 0.797968817 1.084541369 0.868482456 0.928944485 1.075168364 1.143316321 1 16.93901657 -7.263808819 5.826779778 1.083228722 0.923019939 0.438319113 0.078412359 0.13862742 20.11837929 0.039072442 0.020108931 5.45E-08 7.263808819 -0.160208783 AES(ph)GDSLGSEDRDLLYSIDAYR ddPTM_HeLa_A486_30min_R1 4 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 AES(0.994)GDS(0.006)LGSEDRDLLYSIDAYR;AES(0.999)GDS(0.001)LGSEDRDLLYSIDAYR;AES(0.998)GDS(0.001)LGSEDRDLLYSIDAYR;AES(0.99)GDS(0.01)LGSEDRDLLYSIDAYR ;;; 233.54 1.01E-37 355894000 112886 164593 124064 60292 177834 171255 207857 229513 129911 161763 TRUE FALSE FALSE 104973.2743 151550.0512 172104.9033 140362.823 155528.4015 150127.2993 155848.9801 177257.9001 141171.7901 121256.4919 0.865712612 1.249830412 1.419345889 1.157569552 1.282639791 1.238097004 1.285283597 1.461842557 1.164241088 1 16.88770246 -4.264690993 5.685912534 1.270336293 0.853184984 0.453443539 0.125459561 0.11000395 15.09200078 0.029222964 0.178684651 5.44E-05 4.264690993 -0.417151309 AES(ph)GPDLR ddPTM_HeLa_A485_30min_R1 1 AESGPDLR 8 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 AES(1)GPDLR 81.525 0.0080094 257190000 518630 623050 580600 550450 694260 683420 779680 846410 510690 801140 TRUE FALSE FALSE 633997.4542 695910.2777 795388.1008 580519.6897 625137.0367 719202.8144 613094.9986 638826.6204 613180.7987 601430.5419 1.054149083 1.157091683 1.322493697 0.965231476 1.039416846 1.195820239 1.01939452 1.062178549 1.01953718 1 19.19803861 -6.653261284 0.433827806 0.998990915 1.156215406 0.18304982 0.093743716 2.062691017 0.870018908 0.101376402 0.115796947 2.22E-07 6.653261284 0.15722449 AES(ph)LRSPR ddPTM_HeLa_A486_30min_R1 1 AESLRSPR 8 1 Q86UA6-6;Q86UA6-5;Q86UA6-7;Q86UA6-3;Q86UA6-4;Q86UA6-9;Q86UA6-2;Q86UA6;Q86UA6-8 Q86UA6-6 RPAIN RPA-interacting protein 1 0 AES(0.997)LRS(0.003)PR 59.418 0.017195 394840000 118110 180800 261040 5443 265450 98502 71609 115870 171000 25282 TRUE FALSE FALSE 109831.0989 166472.7495 362121.6789 12671.57907 232154.7858 86349.82473 53691.6708 89488.93042 185822.4177 18951.22264 5.795462435 8.784274908 19.10809058 0.668641771 12.25012181 4.556425006 2.833150758 4.722066334 9.8052997 1 14.21000331 -6.048369353 1.280743302 4.73919534 9.935941317 0.160343853 4.945282751 0.837234834 2.842796368 2.178629012 2.367500545 8.95E-07 6.048369353 5.196745978 AES(ph)MLQQADK ddPTM_HeLa_A485_30min_R1 1 AESMLQQADK 10 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2 P13797-3 PLS3 Plastin-3 1 0 AES(1)MLQQADK 129.54 8.59E-05 133500000 124440 114780 126420 137730 134270 125140 147240 141840 116990 181130 TRUE FALSE FALSE 152121.2487 128202.5225 173188.0188 145253.8411 120901.6073 131692.1369 115780.9712 107053.5176 140468.8199 135977.6245 1.118722652 0.942820726 1.273650863 1.068218699 0.889128692 0.968483877 0.851470759 0.787287747 1.03302893 1 17.05300975 -5.694435963 5.162141501 0.909729407 1.105752617 0.433059636 0.100494956 0.185573636 9.363652716 0.02984434 0.038332167 2.02E-06 5.694435963 0.19602321 AES(ph)PAEKVPEESVLPLVQK ddPTM_HeLa_A485_30min_R1 3 AESPAEKVPEESVLPLVQK 19 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK ;; 301.12 1.41E-79 8112300000 4737950 3285070 1954640 6673400 3251550 3898600 5848800 4700790 2787470 7856000 TRUE FALSE FALSE 5791890.632 3669230.36 2677742.675 7037950.944 2927814.265 4102724.668 4599156.1 3547913.882 3346889.661 5897643.779 0.982068577 0.622151913 0.454036014 1.193349617 0.496437963 0.695654879 0.779829415 0.601581583 0.567496069 1 22.49170725 -10.23320258 8.020007166 1.000000208 0.706495867 0.139861024 0.215351894 7.70E-07 7.36E-08 0.200437713 0.048613251 5.85E-11 10.23320258 -0.293504341 AES(ph)PAEKVPEESVLPLVQK ddPTM_HeLa_A486_30min_R1 3 AESPAEKVPEESVLPLVQK 19 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK;AES(1)PAEKVPEESVLPLVQK ;; 264.08 1.23E-58 7120170000 7747250 7625610 2484891 3212492 4896220 8599650 9923090 8389240 6300150 13211890 TRUE FALSE FALSE 7204207.782 7021328.892 3447107.343 7478843.726 4282090.432 7538712.618 7440227.926 6479193.188 6846252.075 9903546.749 0.727437146 0.708971146 0.348067963 0.755168216 0.432379484 0.761213413 0.751269027 0.654229576 0.691292953 1 23.23951386 -6.350566499 24.99999974 0.748720379 0.596003955 0.257162072 0.148035598 112.2409859 31479.76666 0.050360665 0.044413929 4.46E-07 6.350566499 -0.152716425 AES(ph)PDLR ddPTM_HeLa_A485_30min_R1 5 AESPDLR 7 0 Q6UN15-5;Q6UN15;A0A0B4J203;Q6UN15-4 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AES(1)PDLR;AES(1)PDLR;AES(1)PDLR;AES(1)PDLR;AES(1)PDLR ;;;; 126.24 0.0017424 16335400000 29235300 37750140 34917290 34652700 47665730 38944800 47461850 49414120 35393550 47312070 TRUE FALSE FALSE 35738591.62 42164690.49 47834648.6 36545689.26 42919962.56 40983889.51 37321238.02 37295229.59 42496710.84 35518041.66 1.006209519 1.18713444 1.34677044 1.028933115 1.208398902 1.153889336 1.050768462 1.050036203 1.196482375 1 25.0820487 -6.698852018 7.29821324 1.078642467 1.162487037 0.132258078 0.100324918 0.472223551 45.85356384 0.038426 0.029535483 2.00E-07 6.698852018 0.08384457 AES(ph)PDLR ddPTM_HeLa_A486_30min_R1 4 AESPDLR 7 0 Q6UN15-5;Q6UN15;A0A0B4J203;Q6UN15-4 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AES(1)PDLR;AES(1)PDLR;AES(1)PDLR;AES(1)PDLR ;;; 119.86 0.0020851 20424000000 26570500 31074300 24122800 10277100 34763900 28487700 32998000 33352400 25282300 32295000 TRUE FALSE FALSE 24708045.16 28611859.3 33463794.19 23925608.18 30403487.5 24973177.22 24741551.38 25758786.6 27473790.12 24208121.79 1.02065106 1.181911572 1.382337485 0.9883298 1.255920957 1.031603254 1.02203515 1.06405556 1.134899698 1 24.52898782 -6.284175704 24.58267917 1.05274197 1.168890646 0.218081676 0.109055002 1045.475936 1130371.831 0.038017539 0.0335491 5.20E-07 6.284175704 0.116148675 AES(ph)PDLRR ddPTM_HeLa_A485_30min_R1 2 AESPDLRR 8 1 Q6UN15-5;Q6UN15;A0A0B4J203;Q6UN15-4 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AES(1)PDLRR;AES(1)PDLRR ; 65.719 0.011813 770280000 1115060 1755700 2212120 1234120 2103390 1652980 1792400 1944550 1766530 1469980 TRUE FALSE FALSE 1363101.25 1961013.842 3030475.242 1301536.851 1893969.106 1739527.477 1409439.097 1467646.064 2121056.367 1103541.039 1.235206668 1.777019407 2.74613733 1.179418621 1.716265222 1.576314261 1.277196812 1.329942441 1.922045753 1 20.07370885 AES(ph)PEEVACR ddPTM_HeLa_A485_30min_R1 4 AESPEEVACR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR ;;; 216.35 7.77E-17 4661970000 2676170 3126610 3203740 3088380 3910710 2883470 3428600 3420360 2808890 3968210 TRUE FALSE FALSE 3271474.784 3492239.842 4388936.745 3257090.379 3521345.981 3034444.031 2696051.601 2581511.347 3372608.458 2979008.276 1.098175795 1.172282692 1.473287865 1.093347207 1.182053104 1.018608795 0.905016486 0.866567363 1.132124568 1 21.5064007 -6.20077907 1.938237572 0.963018329 1.225837038 0.463289832 0.118394996 0.296769351 2.194921884 0.047910373 0.045808793 6.30E-07 6.20077907 0.262818709 AES(ph)PEEVACR ddPTM_HeLa_A486_30min_R1 4 AESPEEVACR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR;AES(1)PEEVACR ;;; 205.56 6.20E-14 5383860000 4186160 5331100 4005630 1948013 5971500 5124740 5664970 5900240 4392440 5132320 TRUE FALSE FALSE 3892731.801 4908644.22 5556717.21 4535072.711 5222498.788 4492501.683 4247534.588 4556884.153 4773180.236 3847153.666 1.011847235 1.275915819 1.444371006 1.178812469 1.357496799 1.167746878 1.104071986 1.18448197 1.240704336 1 21.87536003 -6.493917504 21.91188986 1.146005393 1.261483738 0.183012701 0.120644847 276.0254561 208839.2696 0.042483783 0.037354159 3.21E-07 6.493917504 0.115478346 AES(ph)PEEVACRK ddPTM_HeLa_A485_30min_R1 1 AESPEEVACRK 11 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AES(1)PEEVACRK 108.97 0.00035356 255660000 323590 360470 296010 391190 505180 377530 489220 595460 358550 509170 TRUE FALSE FALSE 395571.4791 402623.8308 405516.417 412559.7192 454882.5054 397296.887 384694.1504 449422.5014 430507.6962 382243.2896 1.034868341 1.053318245 1.06088564 1.079311869 1.190033986 1.039382241 1.006411783 1.175749879 1.126266197 1 18.54413165 -5.212764524 3.147529425 1.094614322 1.047312393 0.076455288 0.060689788 0.653585849 12.99931191 0.017815241 0.032426179 6.13E-06 5.212764524 -0.047301929 AES(ph)PEEVACRK ddPTM_HeLa_A486_30min_R1 1 AESPEEVACRK 11 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AES(1)PEEVACRK 127.79 3.08E-05 441460000 264500 299970 202760 129610 335140 285860 371160 368190 235600 330420 TRUE FALSE FALSE 245959.9159 276199.2847 281274.1021 301738.6301 293103.6161 250593.4996 278291.8423 284361.1745 256021.9977 247680.6813 0.993052484 1.115142623 1.135631978 1.218256622 1.183393128 1.011760377 1.123591234 1.148095899 1.033677703 1 17.91812182 -6.2521322 24.92699333 1.076441422 1.133636759 0.167224598 0.069970927 1437.016092 3848690.585 0.024351864 0.024070039 5.60E-07 6.2521322 0.057195337 AES(ph)PESSAIESTQS(ph)TPQK ddPTM_HeLa_A485_30min_R1 1 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 AES(1)PESSAIESTQS(0.613)T(0.387)PQK 231.62 7.96E-35 535700000 830050 579060 463770 1064200 855260 606820 862820 726290 668550 1486800 TRUE FALSE FALSE 1014691.759 646776.0298 635337.8221 1122334.551 770107.3114 638592.1569 678471.4584 548166.2387 802721.8527 1116168.123 0.909085055 0.57946112 0.569213373 1.005524642 0.689956375 0.572129005 0.607857763 0.491114401 0.719176472 1 20.09012292 -8.033297164 23.29582846 1.000000006 0.672108081 0.282214034 0.152871404 2670.794195 1868576.894 0.151314426 0.039069217 9.26E-09 8.033297164 -0.327891925 AES(ph)PESSAIESTQST(ph)PQK ddPTM_HeLa_A486_30min_R1 3 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 AES(0.999)PES(0.002)SAIES(0.016)T(0.005)QS(0.058)T(0.92)PQK;AES(0.578)PES(0.415)S(0.007)AIESTQS(0.018)T(0.982)PQK;AES(1)PESSAIES(0.005)T(0.034)QS(0.269)T(0.692)PQK ;; 260.11 1.60E-57 1145210000 1368810 1448970 728835 485371 1074760 1504530 1588860 1416070 1247970 1611290 TRUE FALSE FALSE 1272863.488 1334148.34 1011059.431 1129968.217 939953.5791 1318916.386 1191310.423 1093661.774 1356145.044 1207812.496 1.053858518 1.104598888 0.837099661 0.935549368 0.778228063 1.091987696 0.986337222 0.905489699 1.122810907 1 20.20396507 -7.759215578 24.99996753 1.061405448 0.96044161 0.129377739 0.103478804 118.9689124 1337570.071 0.079989647 0.026940767 1.74E-08 7.759215578 -0.100963838 AES(ph)PESSAIESTQSTPQK ddPTM_HeLa_A485_30min_R1 2 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 AES(0.997)PES(0.003)SAIESTQSTPQK;AES(0.99)PES(0.01)SAIESTQSTPQK ; 445.4 2.54E-203 3648100000 939420 912930 695380 1111930 1146210 978870 1374790 1612110 974840 1741020 TRUE FALSE FALSE 1148390.738 1019689.222 952629.9992 1172671.92 1032089.308 1030122.12 1081054.885 1216737.495 1170481.446 1307015.755 0.878635727 0.780165976 0.728858849 0.897213301 0.789653303 0.788148204 0.82711695 0.930927948 0.895537366 1 20.3178451 -7.623805865 1.013573587 0.989640042 0.805678597 0.590748558 0.050245556 0.344371276 0.690440012 0.046737756 0.016605936 2.38E-08 7.623805865 -0.183961445 AES(ph)PESSAIESTQSTPQK ddPTM_HeLa_A486_30min_R1 3 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 AES(0.952)PES(0.047)SAIESTQSTPQK;AES(0.997)PES(0.002)SAIESTQSTPQK;AES(0.675)PES(0.311)S(0.014)AIESTQSTPQK ;; 431.7 1.39E-182 2848980000 1068620 1087640 649165 358704 958060 1050480 1313890 1168890 854470 1223270 TRUE FALSE FALSE 993715.2564 1001451.445 900539.0732 835081.0399 837891.1812 920882.4581 985140.8251 902759.2637 928536.1476 916955.2298 1.083711859 1.092148682 0.982097101 0.91071081 0.913775454 1.004282901 1.074360877 0.984518365 1.012629753 1 19.80649177 -4.762413349 24.99999995 0.983384784 1.0879303 0.456756933 0.044732778 23.51288316 603612.2636 0.013188586 0.030278415 1.73E-05 4.762413349 0.104545516 AES(ph)PGPGSR ddPTM_HeLa_A485_30min_R1 5 AESPGPGSR 9 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 AES(1)PGPGSR;AES(1)PGPGSR;AES(1)PGPGSR;AES(1)PGPGSR;AES(1)PGPGSR ;;;; 171.87 5.06E-06 2382354000 3029030 3876770 2793430 3901640 3425220 3887460 4475650 5525780 3756770 5217290 TRUE FALSE FALSE 3702827.273 4330124.528 3826836.001 4114776.714 3084193.07 4091001.394 3519390.815 4170573.791 4510719.28 3916715.62 0.945390892 1.105549891 0.977052299 1.050568158 0.787443708 1.044497939 0.898556637 1.064814042 1.151658613 1 21.90121295 -7.453214245 8.914146977 1.086551683 0.976829158 0.201330081 0.090166261 0.574218591 69.88905698 0.048351716 0.023069484 3.52E-08 7.453214245 -0.109722525 AES(ph)PGPGSR ddPTM_HeLa_A486_30min_R1 3 AESPGPGSR 9 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 AES(1)PGPGSR;AES(1)PGPGSR;AES(1)PGPGSR ;; 185.96 2.48E-08 3420450000 2709190 2153930 2426100 964000 2600820 2758380 2711780 2410350 2696220 2929720 TRUE FALSE FALSE 2519289.771 1983244.742 3365550.893 2244240.718 2274600.904 2418079.121 2033263.962 1861565.923 2929930.52 2196099.043 1.147165826 0.903076184 1.532513255 1.02192145 1.035746048 1.101079265 0.925852579 0.847669384 1.334152269 1 21.06651169 AES(ph)PMSR ddPTM_HeLa_A485_30min_R1 2 AESPMSR 7 0 Q6ZUT6 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 0 AES(1)PMSR;AES(1)PMSR ; 185.58 0.00040602 1933740000 804490 1093020 1065950 864850 1251120 1058930 1205520 1316940 1024000 1333520 TRUE FALSE FALSE 983446.025 1220839.181 1460289.263 912094.5656 1126554.1 1114373.937 947950.8038 993958.4001 1229507.407 1001098.006 0.98236738 1.219500163 1.458687616 0.911094179 1.125318494 1.113151691 0.94691109 0.992868225 1.228158882 1 19.93315179 -5.285145128 24.98546843 1.047114895 1.220116669 0.252055027 0.137985434 1073.623509 1131578.933 0.039063898 0.057975527 5.19E-06 5.285145128 0.173001774 AES(ph)PMSR ddPTM_HeLa_A486_30min_R1 1 AESPMSR 7 0 Q6ZUT6 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 0 AES(1)PMSR 190.62 0.00039298 864450000 630600 619180 568540 222190 707880 590820 677490 675340 571780 656960 TRUE FALSE FALSE 586398.1964 570113.9218 788693.914 517269.5489 619091.0897 517930.6354 507974.8362 521579.8246 621342.3508 492452.9399 1.190770019 1.157702342 1.601561997 1.050393869 1.257157871 1.051736305 1.031519553 1.059146534 1.261729397 1 18.90962634 AES(ph)PSPAPPPGLR ddPTM_HeLa_A485_30min_R1 5 AESPSPAPPPGLR 13 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 AES(0.996)PS(0.004)PAPPPGLR;AES(0.791)PS(0.209)PAPPPGLR;AES(0.999)PS(0.001)PAPPPGLR;AES(0.9)PS(0.1)PAPPPGLR;AES(0.698)PS(0.302)PAPPPGLR ;;;; 235.31 8.65E-35 4149490000 1236310 1533010 1446580 1433570 2096060 1562760 2038850 2130910 1456640 1963510 TRUE FALSE FALSE 1511322.894 1712282.184 1981730.139 1511882.299 1887368.907 1644583.697 1603233.042 1608300.981 1748974.287 1474043.093 1.025290849 1.161622881 1.344418049 1.025670353 1.280402802 1.115695806 1.087643265 1.091081386 1.186515032 1 20.49134727 -6.500689377 24.14084227 1.099295649 1.172001236 0.11150847 0.101090519 1167.25721 1269916.262 0.034866149 0.030472322 3.16E-07 6.500689377 0.072705587 AES(ph)PSPAPPPGLR ddPTM_HeLa_A486_30min_R1 6 AESPSPAPPPGLR 13 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 AES(0.998)PS(0.002)PAPPPGLR;AES(0.954)PS(0.046)PAPPPGLR;AES(0.998)PS(0.002)PAPPPGLR;AES(0.988)PS(0.012)PAPPPGLR;AES(0.999)PS(0.001)PAPPPGLR;AES(0.999)PS(0.001)PAPPPGLR ;;;;; 261.13 2.14E-41 3623750000 2902860 3376660 2781190 1170410 3911050 3308100 3879320 3826400 2768650 3335400 TRUE FALSE FALSE 2699384.504 3109081.164 3858141.251 2724773.629 3420489.64 2899980.256 2908673.105 2955212.25 3008638.811 2500194.13 1.079669963 1.243535902 1.543136673 1.089824825 1.368089621 1.159902034 1.163378903 1.181993116 1.203362081 1 21.25360869 -6.397156289 9.994436207 1.153690479 1.269353751 0.170511588 0.134375742 0.779235198 59.42920743 0.046714572 0.04117226 4.01E-07 6.397156289 0.115663271 AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR ddPTM_HeLa_A485_30min_R1 2 AESPTPGMAQGMEPGAGQEGAMFVHAR 27 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 0 AES(0.949)PT(0.051)PGMAQGMEPGAGQEGAMFVHAR;AES(0.694)PT(0.306)PGMAQGMEPGAGQEGAMFVHAR ; 137.91 1.43E-06 824950000 157316 128649 113833 162738 167810 164249 221909 212500 154379 234006 TRUE FALSE FALSE 192310.4015 143693.3815 155944.5637 171627.9649 151102.2472 172848.8237 174496.3293 160384.0418 185361.4493 175672.6108 1.094709076 0.817961211 0.887699927 0.976976229 0.86013549 0.983925855 0.993304127 0.912971243 1.055152812 1 17.42252975 -6.375566619 24.86384734 0.983897731 0.92194826 0.134510397 0.07690063 42.38566322 9168.421681 0.025987578 0.022918887 4.21E-07 6.375566619 -0.061949471 AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR ddPTM_HeLa_A486_30min_R1 1 AESPTPGMAQGMEPGAGQEGAMFVHAR 27 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 0 AES(0.975)PT(0.025)PGMAQGMEPGAGQEGAMFVHAR 164.14 7.60E-14 604580000 120250 160160 113080 60460 156010 179220 209550 195750 114130 190300 TRUE FALSE FALSE 111821.096 147468.3383 156867.6044 140753.9355 136441.7711 157109.6586 157118.3736 151181.9982 124022.8803 142647.6414 0.783897265 1.033794439 1.099685932 0.98672459 0.956495108 1.101382799 1.101443894 1.059828237 0.869435198 1 17.12209637 -4.260764984 24.53853282 1.029122854 0.783897166 0.506960637 0.070580674 35.97109119 1308483.159 0.017832035 0.103638543 5.49E-05 4.260764984 -0.245225687 AESGDS(ph)LGSEDRDLLYSIDAYR ddPTM_HeLa_A485_30min_R1 1 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 AESGDS(0.758)LGS(0.242)EDRDLLYSIDAYR 142.28 1.11E-09 1167400000 85292 88037 98879 101230 129760 107290 128610 134610 91784 142840 TRUE FALSE FALSE 104264.9111 98332.16133 135458.4568 106759.9386 116840.6388 112907.5385 101131.4229 101596.6864 110204.2069 107232.6168 0.972324599 0.916998617 1.263220659 0.99559203 1.089599809 1.052921601 0.943103189 0.947442014 1.027711626 1 16.71038427 -6.746230484 24.41961528 0.975184381 1.051699254 0.124689026 0.088851359 368.1686207 591136.4488 0.034505083 0.026614522 1.79E-07 6.746230484 0.076514873 AESGDS(ph)LGSEDRDLLYSIDAYR ddPTM_HeLa_A486_30min_R1 2 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 AES(0.061)GDS(0.852)LGS(0.087)EDRDLLYSIDAYR;AES(0.01)GDS(0.982)LGS(0.009)EDRDLLYSIDAYR ; 91.583 0.00071359 759810000 42479.6 47183 39305.2 16425.4 62205.8 35105.9 49507 48991 27500.3 41474.1 TRUE FALSE FALSE 39501.9994 43444.04724 54525.22607 38239.16129 54403.36852 30774.89099 37119.82497 37836.81877 29884.04815 31088.71541 1.270621796 1.397421755 1.753859089 1.23000133 1.749939417 0.98990552 1.193996744 1.217059575 0.961250658 1 14.92410339 -6.277992154 24.86130767 1.093605848 1.477045142 0.561238434 0.179841966 603.4094079 906283.3387 0.061073013 0.054010598 5.27E-07 6.277992154 0.383439294 AESKESVGSRDS(ph)S(ph)KR ddPTM_HeLa_A485_30min_R1 1 AESKESVGSRDSSKR 15 3 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 AES(0.006)KES(0.008)VGS(0.009)RDS(0.978)S(1)KR 45.434 0.026299 274960000 156920 234280 191590 84662 276540 223490 235190 290660 216130 146860 TRUE FALSE FALSE 191826.3126 261677.008 262467.1137 89286.87068 249006.7066 235191.5908 184939.7352 219375.1793 259505.3085 110250.5048 1.739913237 2.373476735 2.380643193 0.80985453 2.258553892 2.133247293 1.677450236 1.989788434 2.35377887 1 16.75042574 -10.14286234 3.790548863 0.99950674 1.963915692 0.289284485 0.455373072 308347858 561827953.2 2064279.511 0.114825519 7.20E-11 10.14286234 0.964408952 AESKESVGSRDS(ph)S(ph)KR ddPTM_HeLa_A486_30min_R1 1 AESKESVGSRDSSKR 15 3 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 AES(0.013)KES(0.013)VGS(0.013)RDS(0.961)S(0.999)KR 43.548 0.028595 350440000 214570 235460 203200 12640 281330 195190 190640 230400 203890 90873 TRUE FALSE FALSE 199529.751 216801.2921 281884.4819 29426.55879 246042.9681 171109.4423 142939.8556 177942.9496 221563.3494 68117.80932 2.929186259 3.18274023 4.138190654 0.431995084 3.612021152 2.511963377 2.098421207 2.612282329 3.252649367 1 16.05574442 -10.90698899 2.562630063 1.79E-11 2.732234209 0.23428114 0.949686432 22296222.4 13718908.41 134535989.2 0.232547744 1.24E-11 10.90698899 2.732234209 AESPES(ph)SAIESTQSTPQK ddPTM_HeLa_A485_30min_R1 2 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 AES(0.305)PES(0.69)S(0.006)AIESTQSTPQK;AES(0.076)PES(0.922)S(0.002)AIESTQSTPQK ; 469.15 2.07E-226 997200000 296880 362990 243987 396400 432080 359976 460190 564970 351080 662540 TRUE FALSE FALSE 362919.9318 405438.5229 334247.9444 418054.3283 389060.5981 378823.7867 361866.6471 426410.2217 421538.5357 497380.9711 0.729661875 0.815146832 0.672015947 0.840511303 0.782218502 0.761637072 0.727544213 0.857311088 0.847516411 1 18.92399179 -8.069394612 1.043579749 0.99826644 0.763479884 0.687078477 0.048659365 0.33557876 0.808130115 0.044473249 0.01455964 8.52E-09 8.069394612 -0.234786556 AESPES(ph)SAIESTQSTPQK ddPTM_HeLa_A486_30min_R1 2 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 AES(0.072)PES(0.923)S(0.005)AIESTQSTPQK;AES(0.346)PES(0.651)S(0.003)AIESTQSTPQK ; 487.97 0 521080000 241140 240770 150677 81274 232110 232760 289560 265440 198192 309080 TRUE FALSE FALSE 224237.3312 221690.5083 209023.1697 189209.9794 202996.5995 204044.4377 217109.0253 205005.1065 215371.4421 231684.3562 0.967857023 0.956864382 0.902189397 0.816671365 0.876177411 0.880700109 0.937089706 0.884846564 0.92958992 1 17.82180111 -8.086100752 4.563098805 0.999986348 0.901377657 0.332207739 0.0415862 0.576499623 27.17540399 0.04413165 0.011532526 8.20E-09 8.086100752 -0.098608691 AESSSGGGTVPSSAGILEQGPS(ph)PGDGSPPKPK ddPTM_HeLa_A486_30min_R1 2 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPK 32 1 Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 AESSSGGGTVPSSAGILEQGPS(0.871)PGDGS(0.129)PPKPK;AESSSGGGTVPSSAGILEQGPS(0.908)PGDGS(0.092)PPKPK ; 215.92 4.12E-39 5779000000 1560720 1699080 609600 993790 1232860 2321700 2609400 2130300 1325190 2993000 TRUE FALSE FALSE 1451321.588 1564438.713 845653.4457 2313593.343 1078223.203 2035272.259 1956500.521 1645277.194 1440058.536 2243533.319 0.646891034 0.69731022 0.376929301 1.031227539 0.480591571 0.907172736 0.872062164 0.733341992 0.641870804 1 21.09734118 -5.25619394 24.99835553 0.791332035 0.586070211 0.273243847 0.174098599 652.501556 3109636.409 0.045785156 0.076374932 5.54E-06 5.25619394 -0.205261824 AESSSGGGTVPSSAGILEQGPSPGDGS(ph)PPKPK ddPTM_HeLa_A485_30min_R1 2 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPK 32 1 Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 AESSSGGGTVPSSAGILEQGPS(0.098)PGDGS(0.902)PPKPK;AESSSGGGTVPSSAGILEQGPS(0.217)PGDGS(0.783)PPKPK ; 267.31 1.86E-64 3829400000 482930 249806 196912 1064060 446060 344195 566660 379633 301412 1380660 TRUE FALSE FALSE 590356.1124 279018.6387 269757.943 1122186.903 401648.7002 362216.518 445588.4618 286527.4115 361902.6237 1036486.871 0.569574134 0.269196501 0.260261804 1.082683182 0.387509684 0.349465611 0.429902659 0.276440946 0.349162767 1 19.98327041 -10.33896827 3.496205771 1.002713349 0.440530949 0.343084668 0.231809162 373792453 546847399 10498836.37 0.058915635 4.58E-11 10.33896827 -0.5621824 AESSSGGGTVPSSAGILEQGPSPGDGS(ph)PPKPKDPVSAAVPAPGR ddPTM_HeLa_A485_30min_R1 1 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPKDPVSAAVPAPGR 44 2 Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 AESSSGGGTVPSSAGILEQGPS(0.067)PGDGS(0.933)PPKPKDPVSAAVPAPGR 103.81 1.15E-06 719080000 173970 118720 76484 254090 167800 180020 277800 303840 122490 340150 TRUE FALSE FALSE 212669.0263 132603.2713 104778.6144 267970.2933 151093.2428 189445.5688 218445.7606 229322.7636 147072.6195 255356.865 0.83283066 0.519286103 0.410322293 1.049395297 0.591694462 0.741885552 0.85545286 0.898048163 0.575949346 1 17.96215532 -13.99999988 0.068572618 1.956371346 0.368255821 0.172913203 0.18549158 538.497542 2.658932211 82.33777995 10.66990749 1.00E-14 13.99999988 -1.588115525 AESSSGGGTVPSSAGILEQGPSPGDGS(ph)PPKPKDPVSAAVPAPGR ddPTM_HeLa_A486_30min_R1 2 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPKDPVSAAVPAPGR 44 2 Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 AESSSGGGTVPSSAGILEQGPS(0.024)PGDGS(0.976)PPKPKDPVSAAVPAPGR;AESSSGGGTVPSSAGILEQGPS(0.035)PGDGS(0.945)PPKPKDPVS(0.02)AAVPAPGR ; 136.84 6.13E-09 1430790000 274553 225854 102682 187177 234313 323187 421050 402200 173222 520420 TRUE FALSE FALSE 255308.2525 207956.5065 142443.2203 435757.5154 204923.2787 283315.4739 315698.8366 310627.84 188237.0224 390103.4446 0.654462953 0.533080416 0.365142175 1.117030678 0.525304971 0.726257299 0.809269544 0.796270436 0.482531044 1 18.57349721 -14 0.093886798 1.903938557 0.452847874 0.18103382 0.203502977 359.9473853 2.325384051 66.88437866 4.190615575 1.00E-14 14 -1.451090683 AET(ph)EEAEEPEEDGEEHVCVSASK ddPTM_HeLa_A485_30min_R1 1 AETEEAEEPEEDGEEHVCVSASK 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AET(1)EEAEEPEEDGEEHVCVSASK 298.4 4.14E-89 505330000 644460 569490 310280 689560 515760 543470 783330 678490 414950 835300 TRUE FALSE FALSE 787817.9036 636086.9016 425065.4838 727228.9167 464409.1235 571925.2488 615965.1463 512089.2637 498226.6589 627075.0826 1.25633744 1.014371196 0.677854209 1.159715857 0.740595722 0.912052264 0.982282925 0.816631497 0.794524727 1 19.25827867 -4.380894943 3.650939827 0.885964245 1.259395538 0.415132178 0.133495358 0.220350803 4.712194545 0.03182927 0.174835426 4.16E-05 4.380894943 0.373431293 AET(ph)EEAEEPEEDGEEHVCVSASK ddPTM_HeLa_A486_30min_R1 1 AETEEAEEPEEDGEEHVCVSASK 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AET(1)EEAEEPEEDGEEHVCVSASK 233.42 2.61E-39 453910000 1282900 1183500 500580 365670 645230 1161300 1186400 1022800 881810 1500800 TRUE FALSE FALSE 1192975.335 1089715.15 694417.982 851298.2399 564299.2369 1018030.613 889550.1715 789930.7676 958246.0008 1124989.911 1.060432029 0.968644375 0.617265964 0.756716333 0.50160382 0.904924216 0.790718354 0.702166979 0.851781861 1 20.10148063 -4.606809354 5.991598828 0.75173787 1.038573383 0.35858842 0.134381115 0.17875225 9.757320101 0.033137836 0.090886353 2.47E-05 4.606809354 0.286835513 AET(ph)PPLPIPPPPPDIQPLER ddPTM_HeLa_A485_30min_R1 1 AETPPLPIPPPPPDIQPLER 20 0 U3KPW8;A0A669KB72;Q8IX15;Q8IX15-3 U3KPW8 HOMEZ Homeobox and leucine zipper protein Homez 1 0 AET(1)PPLPIPPPPPDIQPLER 71.558 0.022066 65519000 30635 31528 26648 32570 38606 27483 51892 44388 32493 53088 TRUE FALSE FALSE 37449.65006 35214.92534 36506.20412 34349.21663 34762.25109 28921.96738 40804.85028 33501.7734 39014.04706 39854.13861 0.939667783 0.883595194 0.915995312 0.861873266 0.872236919 0.725695458 1.023854779 0.840609647 0.978920845 1 15.28244193 -7.865839159 5.920213917 0.997914921 0.882640413 0.262446019 0.07165815 0.27527402 12.74264054 0.066627495 0.017344225 1.36E-08 7.865839159 -0.115274509 AET(ph)PPLPIPPPPPDIQPLER ddPTM_HeLa_A486_30min_R1 3 AETPPLPIPPPPPDIQPLER 20 0 U3KPW8;A0A669KB72;Q8IX15;Q8IX15-3 U3KPW8 HOMEZ Homeobox and leucine zipper protein Homez 1 0 AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER ;; 118.72 4.66E-05 143118000 79686 90548 68156 39585 96121 90935 111143 101382 78597 117078 TRUE FALSE FALSE 74100.4229 83372.64671 94547.82848 92155.88052 84064.60789 79716.36426 83333.84585 78299.53175 85409.85124 87760.90675 0.844344317 0.949997554 1.077334225 1.050078947 0.957882171 0.908335695 0.949555433 0.892191463 0.973210674 1 16.42129081 -5.993341265 24.95725414 0.937658026 0.987534877 0.054028249 0.064890168 403.6863003 1513020.118 0.02137429 0.024180067 1.02E-06 5.993341265 0.049876851 AET(ph)PSANHSESDSLSQHNDFLSDKDNNSNMDIEER ddPTM_HeLa_A485_30min_R1 1 AETPSANHSESDSLSQHNDFLSDKDNNSNMDIEER 35 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 AET(0.982)PS(0.017)ANHSESDSLSQHNDFLSDKDNNSNMDIEER 162.49 1.66E-13 149770000 22720 27245 24126 10313 45225 27928 35070 37062 24522 33878 TRUE FALSE FALSE 27773.98562 30431.06575 33051.21137 10876.37308 40722.24021 29390.2669 27577.008 27972.48639 29443.34047 25432.83808 1.092052154 1.19652654 1.299548688 0.427650781 1.601167753 1.155603115 1.084307143 1.099857055 1.157689927 1 14.63440484 -10.06451232 4.352636078 0.999989511 1.123760899 0.017972323 0.274587204 28049603.81 64858531.05 1483.406822 0.063925387 8.62E-11 10.06451232 0.123771388 AET(ph)PTESVSEPEVATK ddPTM_HeLa_A485_30min_R1 2 AETPTESVSEPEVATK 16 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 AET(1)PTESVSEPEVATK;AET(1)PTESVSEPEVATK ; 437.63 9.17E-192 2039300000 474400 419880 295001 630900 540820 450960 719820 663930 354710 779710 TRUE FALSE FALSE 579928.6433 468981.3135 404134.1459 665364.4695 486974.0619 474571.5683 566024.5766 501100.1265 425897.0434 585342.6465 0.990750711 0.801208175 0.690423205 1.136709368 0.831947005 0.810758572 0.966996989 0.856079989 0.727602962 1 19.15892187 -4.238621591 22.84190186 0.867440441 0.990751152 0.076799076 0.126438648 5215.480305 5220727.243 0.030914144 1.3784067 5.77E-05 4.238621591 0.123310711 AET(ph)PTESVSEPEVATK ddPTM_HeLa_A486_30min_R1 3 AETPTESVSEPEVATK 16 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 AET(1)PTESVSEPEVATK;AET(1)PTESVSEPEVATK;AET(1)PTESVSEPEVATK ;; 411.83 7.51E-152 2832250000 1497320 1613400 758960 725650 1519520 1813980 2327640 2139650 1206350 2355750 TRUE FALSE FALSE 1392365.6 1485548.308 1052849.638 1689349.872 1328927.633 1590189.591 1745239.853 1652498.403 1310917.389 1765854.867 0.788493792 0.841262969 0.596226597 0.956675378 0.752569001 0.900521114 0.98832576 0.935806467 0.742369837 1 20.75193534 -5.94677629 1.277341538 0.912734746 0.768351862 0.244550797 0.107251546 0.653631206 2.22940905 0.045267717 0.054036039 1.13E-06 5.94677629 -0.144382883 AETEKQS(ph)PPHGEAK ddPTM_HeLa_A485_30min_R1 2 AETEKQSPPHGEAK 14 1 Q9Y6D6;E5RJN9 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 0 AET(0.049)EKQS(0.951)PPHGEAK;AET(0.034)EKQS(0.966)PPHGEAK ; 97.384 0.00052514 114180000 208906 160875 107681 325898 159747 196683 272579 255260 146483 414990 TRUE FALSE FALSE 255376.419 179687.9318 147516.6829 343700.9825 143842.0278 206981.0178 214340.2699 192657.0848 175880.7945 311540.6303 0.81972107 0.576772062 0.473507044 1.103230042 0.461711937 0.664378889 0.688001015 0.618401152 0.564551706 1 18.2490608 -10.88540165 3.438638699 1.136545197 0.661671379 0.24480265 0.177357371 0.115498817 0.003849189 0.106831358 0.039964097 1.30E-11 10.88540165 -0.474873818 AETEKQS(ph)PPHGEAK ddPTM_HeLa_A486_30min_R1 1 AETEKQSPPHGEAK 14 1 Q9Y6D6;E5RJN9 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 0 AET(0.014)EKQS(0.986)PPHGEAK 120.11 4.22E-05 116060000 143660 130780 37145 56357 82683 146630 170140 140480 109040 258810 TRUE FALSE FALSE 133590.1759 120416.5165 51528.53878 131201.9441 72312.12715 128540.2814 127569.1724 108495.7707 118491.675 194002.2914 0.688601021 0.620696362 0.265607887 0.676290693 0.372738521 0.662570944 0.657565287 0.559249944 0.610774616 1 17.56571417 -10.14990516 0.380551481 1.219811032 0.535239187 0.498013675 0.131651057 14.56277273 1.406824534 3.461929804 0.092748282 7.08E-11 10.14990516 -0.684571846 AETSEGSGSAPAVPEASAS(ph)PK ddPTM_HeLa_A486_30min_R1 1 AETSEGSGSAPAVPEASASPK 21 0 I6LM39;A0A087X1U4;P51608;P51608-2;A0A087WVW7;A0A0D9SFX7;B5MCB4 I6LM39 MECP2 Methyl-CpG-binding protein 2 1 0 AETSEGSGSAPAVPEASAS(1)PK 229.46 4.58E-41 0 131670 130300 60979 99300 109170 153530 203670 173360 111960 267670 TRUE FALSE FALSE 122440.6129 119974.5535 84591.70187 231175.4183 95476.88063 134589.0296 152709.6118 133889.7124 121664.7829 200643.6898 0.610239042 0.597948301 0.421601606 1.152168895 0.475852895 0.670786257 0.761098502 0.667300888 0.606372336 1 17.61427626 -11.33172843 2.168620943 2.751963928 0.665790102 0.224996459 0.187776024 10012970.1 1195542.34 86016554.61 0.045259626 4.66E-12 11.33172843 -2.086173827 AEVDNRS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 AEVDNRSPQK 10 1 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 AEVDNRS(1)PQK;AEVDNRS(1)PQK ; 70.563 0.0066219 633650000 1085010 917640 897790 1898380 1519850 914810 1339960 1006180 1077950 2393500 TRUE FALSE FALSE 1326366.731 1024950.016 1229919.881 2002083.692 1368528.397 962708.037 1053666.6 759412.7774 1294284.677 1796844.499 0.73816445 0.570416648 0.68448877 1.114222012 0.761628732 0.535777046 0.586398322 0.422636894 0.720309786 1 20.77703413 -6.185472269 7.86376073 0.6129788 0.77712811 0.071293806 0.192567073 0.650079422 60.975265 0.064658727 0.064658748 6.52E-07 6.185472269 0.16414931 AEVDNRS(ph)PQK ddPTM_HeLa_A486_30min_R1 3 AEVDNRSPQK 10 1 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 AEVDNRS(1)PQK;AEVDNRS(1)PQK;AEVDNRS(1)PQK ;; 94.688 0.0012259 313480000 2302780 2761250 1816730 1063540 2704730 3007230 3389690 3203980 2496000 3317420 TRUE FALSE FALSE 2141367.014 2542438.494 2520216.51 2475974.868 2365477.543 2636228.538 2541553.71 2474503.696 2712355.29 2486716.439 0.861122314 1.022407884 1.013471609 0.99568042 0.951245387 1.060124305 1.02205208 0.995088808 1.090737668 1 21.24581058 -4.259818209 24.66249139 1.015315224 0.861122251 0.627503431 0.035957785 75.80103773 1153016.566 0.008828415 0.054204027 5.50E-05 4.259818209 -0.154192973 AEVLGHKT(ph)PEPAPR ddPTM_HeLa_A485_30min_R1 4 AEVLGHKTPEPAPR 14 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8-7 9-Sep Septin-9 1 0 AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR ;;; 199.41 1.02E-21 3915890000 3488880 3379380 2532570 4696510 4492290 3713930 5076850 5243170 2869180 6438790 TRUE FALSE FALSE 4264969.32 3774569.094 3469473.032 4953068.449 4045021.834 3908385.632 3992139.523 3957274.337 3444998.108 4833718.15 0.882337196 0.780883158 0.71776486 1.024691199 0.836834443 0.808567134 0.825894146 0.818681233 0.712701486 1 22.20470192 -11.28900352 2.454909476 1.898242067 0.824658257 0.287636767 0.083463317 8372610.451 1791569.843 41762913.96 0.020760855 5.14E-12 11.28900352 -1.07358381 AEVLGHKT(ph)PEPAPR ddPTM_HeLa_A486_30min_R1 6 AEVLGHKTPEPAPR 14 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8-7 9-Sep Septin-9 1 0 AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR ;;;;; 195.96 1.71E-18 5667810000 6600960 6903980 3988070 3438040 6960240 7408330 9356330 8082230 5470460 9507290 TRUE FALSE FALSE 6138266.791 6356883.481 5532357.508 8003930.869 6087221.798 6494365.567 7015277.273 6242082.663 5944643.877 7126602.702 0.861317383 0.891993527 0.776296609 1.123106086 0.854154785 0.911284919 0.984378892 0.875884755 0.834148349 1 22.76478307 AEVYGS(ph)ENESER ddPTM_HeLa_A485_30min_R1 2 AEVYGSENESER 12 0 Q9BVS4;Q9BVS4-2 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 1 0 AEVYGS(1)ENESER;AEVYGS(1)ENESER ; 278.53 2.07E-67 372620000 406490 505630 444840 407060 441000 410690 443860 395840 401070 433330 TRUE FALSE FALSE 496912.2981 564759.0301 609404.8273 429296.6571 397092.4916 432193.0934 349025.685 298759.6193 481561.0702 325308.8058 1.527509521 1.736070527 1.873311808 1.319658888 1.220663211 1.32856254 1.07290574 0.918387741 1.480319812 1 18.31145035 -5.430934866 4.024424953 1.174474953 1.712143415 0.669013581 0.17018276 0.137485817 3.997693277 0.049590582 0.074478385 3.71E-06 5.430934866 0.537668462 AEVYGS(ph)ENESER ddPTM_HeLa_A486_30min_R1 2 AEVYGSENESER 12 0 Q9BVS4;Q9BVS4-2 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 1 0 AEVYGS(1)ENESER;AEVYGS(1)ENESER ; 264.08 1.34E-33 616480000 505730 546370 409940 134706 446670 440050 449650 436780 463360 509960 TRUE FALSE FALSE 470280.9386 503073.6514 568679.7466 313602.3757 390644.4836 385761.1051 337142.8141 337334.7288 503524.4179 382262.6967 1.230255902 1.316041706 1.487667385 0.820384459 1.021926772 1.009151844 0.881966294 0.882468344 1.317220912 1 18.5442049 -5.259804866 25 0.983119546 1.341793672 0.573903507 0.1397572 102.4386492 1566793.9 0.038040175 0.061696365 5.50E-06 5.259804866 0.358674126 AEYEGDGIPTVFVAVAGR ddPTM_HeLa_A485_30min_R1 1 AEYEGDGIPTVFVAVAGR 18 0 P22234;P22234-2;E9PBS1;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 0 83.314 0.0071968 11589000 5408 4792.6 7390.5 7270.1 9187.6 5741.4 6849.3 6752.6 6596 10657 FALSE FALSE TRUE 6610.990943 5353.05288 10124.55349 7667.247154 8272.850284 6042.010826 5385.891101 5096.514262 7919.756698 8000.406028 0.826331929 0.669097651 1.265504958 0.958357254 1.034053804 0.755213024 0.67320222 0.637031951 0.989919345 1 12.9658575 -6.273616617 24.17181568 0.77977085 0.952944258 0.118456394 0.180526858 913.8978615 1814081.157 0.064916131 0.057715114 5.33E-07 6.273616617 0.173173408 AFAAVPTSHPPEDAPAQPPT(ph)PGPAAS(ph)PEQLSFR ddPTM_HeLa_A486_30min_R1 1 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 2 0 AFAAVPTSHPPEDAPAQPPT(1)PGPAAS(0.999)PEQLS(0.001)FR 119.52 4.16E-05 92643000 45057 47872 49315 18789 62612 42523 41175 55847 46769 52845 TRUE FALSE FALSE 41898.73697 44078.44837 68411.0887 43741.74154 54758.61913 37276.9446 30872.5795 43131.85723 50822.97458 39612.26804 1.057721233 1.112747403 1.727017717 1.104247338 1.382365157 0.94104545 0.779369146 1.088850989 1.283010974 1 15.27365969 -6.265439383 24.84107834 1.009065607 1.28312828 0.266477898 0.213916655 450.3179398 2796582.767 0.076416049 0.069868088 5.43E-07 6.265439383 0.274062673 AFAAVPTSHPPEDAPAQPPT(ph)PGPAASPEQLSFR ddPTM_HeLa_A486_30min_R1 1 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 AFAAVPTSHPPEDAPAQPPT(0.72)PGPAAS(0.277)PEQLS(0.003)FR 91.1 0.00023799 196320000 191470 202790 189360 63194 284120 197240 197080 168050 210970 237210 TRUE FALSE FALSE 178048.9418 186720.1819 262685.2632 147118.8256 248483.0203 172906.5342 147768.4995 129788.6835 229257.0495 177811.072 1.001337767 1.050104359 1.477327932 0.827388441 1.397455274 0.97241714 0.831042172 0.729924644 1.289329437 1 17.43998564 -6.495842428 24.77518267 0.934590871 1.149276744 0.14643129 0.220742327 1119.137219 1025542.236 0.074964268 0.06592071 3.19E-07 6.495842428 0.214685873 AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR ddPTM_HeLa_A485_30min_R1 4 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 AFAAVPTSHPPEDAPAQPPTPGPAAS(1)PEQLSFR;AFAAVPTSHPPEDAPAQPPT(0.002)PGPAAS(0.998)PEQLSFR;AFAAVPTSHPPEDAPAQPPT(0.001)PGPAAS(0.999)PEQLSFR;AFAAVPTSHPPEDAPAQPPTPGPAAS(1)PEQLSFR ;;; 312.62 1.55E-109 3624040000 901115 1227090 850041 987612 814568 1119840 1245120 1335460 1079303 1919150 TRUE FALSE FALSE 1101564.923 1370587.501 1164506.539 1041562.743 733466.7498 1178473.091 979089.9403 1007936.341 1295909.212 1440741.224 0.764582081 0.951307201 0.808269049 0.722935337 0.509089861 0.817963053 0.679573766 0.699595683 0.899473958 1 20.4583798 -9.690352012 7.566216879 0.999994676 0.757267772 0.272505878 0.116767232 0 0 0.118545528 0.028751514 2.04E-10 9.690352012 -0.242726904 AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR ddPTM_HeLa_A486_30min_R1 4 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 AFAAVPTSHPPEDAPAQPPT(0.008)PGPAAS(0.991)PEQLS(0.001)FR;AFAAVPTSHPPEDAPAQPPT(0.056)PGPAAS(0.944)PEQLSFR;AFAAVPTSHPPEDAPAQPPT(0.48)PGPAAS(0.52)PEQLSFR;AFAAVPTSHPPEDAPAQPPT(0.057)PGPAAS(0.941)PEQLS(0.002)FR ;;; 232.24 4.65E-40 2883050000 515449 585985 605661 144682 852060 596486 576200 545745 752700 827700 TRUE FALSE FALSE 479318.6869 539549.4145 840189.1594 336827.0078 745186.6897 522897.6219 432028.6656 421490.777 817944.642 620438.5326 0.772548225 0.869625895 1.354185975 0.542885379 1.20106449 0.842787149 0.696327908 0.679343327 1.318333081 1 19.24292876 AFAHDAGGLPS(ph)GTGGLVK ddPTM_HeLa_A486_30min_R1 1 AFAHDAGGLPSGTGGLVK 18 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 AFAHDAGGLPS(0.5)GT(0.5)GGLVK 48.315 0.035557 60963000 60306 81437 69093 21844 97459 64588 74706 64239 60623 61759 TRUE FALSE FALSE 56078.86082 74983.63553 95847.65997 50853.93593 85234.78345 56619.78924 56013.76864 49613.18203 65877.85045 46294.14442 1.211359698 1.619721813 2.070405689 1.098496075 1.841156901 1.223044295 1.209953642 1.071694545 1.423027713 1 15.4985421 -6.391307762 7.742159223 1.187214561 1.572358794 0.319434113 0.279665749 0.343503229 20.01278309 0.096165052 0.084638295 4.06E-07 6.391307762 0.385144233 AFAISGPFNVQFLVK ddPTM_HeLa_A485_30min_R1 1 AFAISGPFNVQFLVK 15 0 P31327;P31327-3;P31327-2 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 95.573 0.0081857 7218400 1707.8 1889.6 2384.4 2387.7 2593.2 2725.2 2800.3 2720 1985 4200 FALSE FALSE TRUE 2087.694218 2110.572283 3266.488783 2518.134005 2335.011903 2867.887258 2201.993029 2052.915735 2383.371293 3153.017295 0.662125838 0.669381765 1.035988222 0.798642624 0.740564255 0.909569149 0.698376451 0.651095615 0.75590175 1 11.62251737 AFDQLR ddPTM_HeLa_A485_30min_R1 1 AFDQLR 6 0 Q9H0I9 Q9H0I9 TKTL2 Transketolase-like protein 2 0 0 114.59 0.026424 29315000 60808 88674 93077 68029 109710 77297 93250 96948 91349 95140 FALSE FALSE TRUE 74334.52981 99043.65294 127510.0556 71745.25201 98786.88718 81344.1514 73326.37572 73171.35099 109681.9064 71423.34892 1.040759513 1.386712531 1.785271308 1.004506973 1.383117547 1.13890139 1.026644323 1.024473818 1.535658969 1 16.12410816 -5.320678056 24.99999632 1.16304365 1.402502693 0.18519069 0.235584586 427.5350393 180428.0196 0.066150448 0.098117002 4.78E-06 5.320678056 0.239459044 AFELLHLHLDLR ddPTM_HeLa_A485_30min_R1 1 AFELLHLHLDLR 12 0 A6NKB8;Q9H4A4;A0A087WU27 A6NKB8 RNPEP Aminopeptidase B 0 0 122.45 0.00038692 9475600 6681.7 5587.7 6307.7 5635.6 5182.9 4966.6 7315.2 7845.4 4377.4 8269.5 FALSE FALSE TRUE 8168.021113 6241.132908 8641.180715 5943.458558 4666.872278 5226.643496 5752.24776 5921.303349 5255.904028 6208.065839 1.315711097 1.005326469 1.391928008 0.957376857 0.751743361 0.841911737 0.926576475 0.953808078 0.846625046 1 12.59992814 -5.433981797 6.365613232 0.88159805 1.212208388 0.659374647 0.112686156 0.143121212 8.479506595 0.030585077 0.045424736 3.68E-06 5.433981797 0.330610338 AFELLHLHLDLR ddPTM_HeLa_A486_30min_R1 1 AFELLHLHLDLR 12 0 A6NKB8;Q9H4A4;A0A087WU27 A6NKB8 RNPEP Aminopeptidase B 0 0 102.87 0.0014319 9691600 3847.5 3041.1 2536.7 3030.1 3864.4 3040.6 3700.2 2996.5 2544.3 3826.7 FALSE FALSE TRUE 3577.810119 2800.112161 3518.978175 7054.225933 3379.690918 2665.481687 2774.370823 2314.262363 2764.841973 2868.469412 1.247288921 0.976169433 1.226779048 2.459229965 1.178221006 0.92923483 0.96719554 0.80679346 0.963873612 1 11.48606542 -5.996446935 24.99973647 0.937929755 1.47305002 0.326863669 0.367928428 140.1973487 986427.3559 0.123005198 0.138826081 1.01E-06 5.996446935 0.535120265 AFGPGLQGGSAGS(ph)PAR ddPTM_HeLa_A485_30min_R1 12 AFGPGLQGGSAGSPAR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR ;;;;;;;;;;; 328.31 1.54E-90 98263370000 3761315 4734330 5305500 3890467 5931710 4391143 4960878 5420799 4384572 5125773 TRUE FALSE FALSE 4598006.545 5287968.71 7268225.23 4102993.361 5341128.125 4621056.457 3900945.889 4091339.546 5264515.383 3848012.124 1.194904381 1.374207913 1.888825969 1.066263106 1.388022686 1.200894464 1.013756133 1.063234578 1.368112993 1 21.87568191 -5.938239414 1.354083457 1.123083365 1.442179917 0.255896593 0.219685149 0.588616412 2.244111996 0.091901365 0.10952609 1.15E-06 5.938239414 0.319096551 AFGPGLQGGSAGS(ph)PAR ddPTM_HeLa_A486_30min_R1 11 AFGPGLQGGSAGSPAR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 AFGPGLQGGSAGS(1)PAR;AFGPGLQGGS(0.209)AGS(0.791)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR ;;;;;;;;;; 319.86 1.65E-78 89228082000 12118141 13665981 13862262 5166630 16583397 11475416 13920828 13596789 11111048 12794877 TRUE FALSE FALSE 11268721.89 12583038.89 19230101.09 12028175.75 14503352.71 10059695.85 10437689.59 10501096.96 12074162.59 9590956.519 1.174932018 1.311969132 2.005024322 1.254116388 1.512190435 1.048873053 1.088284529 1.094895691 1.258911201 1 23.19324327 -6.260850971 24.99212512 1.103504594 1.463655938 0.391613352 0.219969848 58.55393722 2487056.931 0.076281854 0.071929311 5.48E-07 6.260850971 0.360151344 AFGPGLQGGSAGS(ph)PARFTIDTK ddPTM_HeLa_A485_30min_R1 2 AFGPGLQGGSAGSPARFTIDTK 22 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 AFGPGLQGGSAGS(1)PARFTIDTK;AFGPGLQGGS(0.001)AGS(0.999)PARFTIDTK ; 220.13 3.48E-36 962390000 63783 238950 99942 65970 249090 431970 552690 2005230 106136 74534 TRUE FALSE FALSE 77971.3083 266893.1239 136914.7047 69573.77406 224289.725 454587.2812 434603.2664 1513444.198 127436.5217 55954.0455 1.39348831 4.769862868 2.446913418 1.243409184 4.00846307 8.124296951 7.767146461 27.04798527 2.277521143 1 15.77195482 -6.322749774 2.352530967 9.99999998 2.618692108 0.194419883 6.665162212 0.511759719 5.562100747 2.614747795 2.317782394 4.76E-07 6.322749774 -7.381307872 AFGPGLQGGSAGSPAR ddPTM_HeLa_A485_30min_R1 2 AFGPGLQGGSAGSPAR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 235.31 3.18E-32 84520000 11619 15577.2 17559.6 14910.6 22974 16798.7 19317.4 18119.2 16173.9 20758.6 FALSE FALSE TRUE 14203.60646 17398.81804 24055.62676 15725.12832 20686.62789 17678.25396 15190.07968 13675.43779 19419.85337 15583.86305 0.911430395 1.11646374 1.543624111 1.009064843 1.32743902 1.134394848 0.974731338 0.87753837 1.246151439 1 13.92776528 -6.605817624 5.225954424 1.016027739 1.192361601 0.139272881 0.182833593 0.386648191 18.07148854 0.070976163 0.054534896 2.48E-07 6.605817624 0.176333861 AFGS(ph)GYR ddPTM_HeLa_A485_30min_R1 6 AFGSGYR 7 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 AFGS(1)GYR;AFGS(1)GYR;AFGS(0.997)GY(0.003)R;AFGS(1)GYR;AFGS(1)GYR;AFGS(1)GYR ;;;;; 109.36 0.0030825 1407930000 1772610 2606240 2929080 1627320 3216780 2442400 2548130 2941870 3268950 2598270 TRUE FALSE FALSE 2166920.979 2911017.097 4012668.581 1716216.371 2896506.088 2570280.287 2003701.209 2220371.77 3924998.28 1950569.107 1.110917307 1.492393726 2.057178373 0.879854174 1.484954354 1.317707883 1.027239282 1.138319971 2.012232362 1 20.89546368 -5.277221917 24.9976469 1.272881104 1.547386289 0.113493947 0.368024886 1863.710505 2951890.424 0.1027452 0.152985809 5.28E-06 5.277221917 0.274505185 AFGS(ph)GYR ddPTM_HeLa_A486_30min_R1 4 AFGSGYR 7 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 AFGS(1)GYR;AFGS(0.999)GY(0.001)R;AFGS(1)GYR;AFGS(1)GYR ;;; 103.74 0.0037046 2009030000 1946810 2426130 1813880 678234 2160990 2168500 2455310 2924670 2010560 2142150 TRUE FALSE FALSE 1810348.672 2233874.623 2516262.913 1578963.028 1889938.484 1900972.518 1840965.468 2258786.486 2184836.96 1605741.697 1.127422098 1.391179308 1.5670409 0.983323178 1.17698786 1.183859472 1.146489172 1.406693549 1.360640359 1 20.61480841 -5.259432016 24.99833619 1.195333789 1.364810605 0.209828892 0.159969614 315.7614321 3932248.849 0.045601383 0.074215513 5.50E-06 5.259432016 0.169476816 AFGS(ph)GYRR ddPTM_HeLa_A485_30min_R1 2 AFGSGYRR 8 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 AFGS(1)GYRR;AFGS(1)GYRR ; 117.01 0.00053411 1010420000 278650 402770 485760 256980 501720 394810 456120 566360 545430 400120 TRUE FALSE FALSE 340634.7312 449870.4479 665462.8382 271018.1667 451766.9952 415481.6411 358666.2358 427459.322 654892.798 300377.4477 1.134022324 1.497683835 2.215422108 0.902258704 1.503997716 1.38319852 1.194051813 1.423073953 2.180232914 1 18.19641697 -5.284813467 24.97020076 1.386031875 1.60390726 0.069525963 0.408899834 2505.884522 2676994.7 0.115183284 0.170952635 5.19E-06 5.284813467 0.217875384 AFGS(ph)GYRR ddPTM_HeLa_A486_30min_R1 1 AFGSGYRR 8 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 AFGS(1)GYRR 112.01 0.00066707 684550000 177090 214220 188000 70720 219240 170780 236820 262220 176630 175290 TRUE FALSE FALSE 164676.9055 197244.427 260798.6348 164639.734 191740.8749 149710.9 177565.1312 202518.2302 191940.4306 131396.2431 1.253284734 1.50114206 1.98482566 1.253001838 1.459256904 1.139384936 1.351371448 1.541278697 1.460775637 1 17.0035645 AFGSGIDIKPGT(ph)PPIAGR ddPTM_HeLa_A485_30min_R1 4 AFGSGIDIKPGTPPIAGR 18 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 AFGSGIDIKPGT(1)PPIAGR;AFGS(0.001)GIDIKPGT(0.999)PPIAGR;AFGSGIDIKPGT(1)PPIAGR;AFGSGIDIKPGT(1)PPIAGR ;;; 132.36 8.23E-06 14808980000 14712600 14008960 10424080 16283020 17184060 15587830 18676340 19971860 12273380 22333160 TRUE FALSE FALSE 17985367.11 15647186.01 14280380.97 17172520.15 15473154.65 16403984.68 14685987.39 15073730.02 14736534.79 16765914.22 1.072734053 0.933273653 0.851750807 1.024251939 0.922893583 0.978412776 0.87594313 0.899069971 0.878958021 1 23.99902782 -6.755499107 24.99015032 0.905081944 0.958278202 0.118922802 0.064545006 296.2259437 1246198.554 0.024669751 0.018595006 1.76E-07 6.755499107 0.053196258 AFGSGIDIKPGT(ph)PPIAGR ddPTM_HeLa_A486_30min_R1 4 AFGSGIDIKPGTPPIAGR 18 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 AFGSGIDIKPGT(1)PPIAGR;AFGSGIDIKPGT(1)PPIAGR;AFGSGIDIKPGT(1)PPIAGR;AFGSGIDIKPGT(1)PPIAGR ;;; 136.14 4.83E-06 19436310000 15707840 14639640 8637640 5649040 13362080 13925100 16260850 15068010 10702410 17493220 TRUE FALSE FALSE 14606801.53 13479541.61 11982365.53 13151250.61 11686083.33 12207162.74 12192213.34 11637353.06 11630103.52 13112803.85 1.113934266 1.027967913 0.913791258 1.002932001 0.891196381 0.930934595 0.929794534 0.887480144 0.886927285 1 23.64447287 -3.621991717 0.802812562 0.919360822 1.520661212 0.665798801 0.04126892 3.407759792 0.815663728 0.014362931 2.31996634 0.000238786 3.621991717 0.601300389 AFGYYGPLR ddPTM_HeLa_A486_30min_R1 2 AFGYYGPLR 9 0 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 ; ; 144.29 0.0046407 186994000 183283 183393 152181 87822 245290 177951 187527 205156 132497 193403 FALSE FALSE TRUE 170435.8082 168860.2708 211109.5587 204454.0543 214523.441 155997.2149 140605.7611 158446.4573 143981.9466 144973.63 1.17563317 1.164765419 1.456192818 1.410284438 1.479741116 1.076038552 0.969871288 1.092932952 0.993159561 1 17.14543098 -6.392427844 5.80202443 1.022248717 1.337393678 0.698566738 0.10260046 0.149366877 6.43104057 0.040396457 0.035417678 4.05E-07 6.392427844 0.315144962 AFHAALRNS(ph)PVNTK ddPTM_HeLa_A485_30min_R1 2 AFHAALRNSPVNTK 14 1 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 1 0 AFHAALRNS(0.967)PVNT(0.033)K;AFHAALRNS(1)PVNTK ; 182.28 1.37E-17 2833860000 2100940 2312360 2216460 2269470 3191300 3148900 3796700 4348400 2251910 3130100 TRUE FALSE FALSE 2568286.855 2582770.387 3036420.789 2393445.399 2873562.967 3313771.535 2985504.029 3281948.082 2703847.681 2349823.675 1.092970031 1.099133699 1.292190908 1.018563829 1.222884507 1.410221358 1.270522576 1.396678447 1.150659817 1 21.16412107 -5.9912801 24.87979296 1.276919643 1.133834246 0.142660001 0.128847424 281.3235997 802671.6464 0.037899923 0.042911783 1.02E-06 5.9912801 -0.143085397 AFHAALRNS(ph)PVNTK ddPTM_HeLa_A486_30min_R1 2 AFHAALRNSPVNTK 14 1 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 1 0 AFHAALRNS(1)PVNTK;AFHAALRNS(1)PVNTK ; 190.46 4.92E-18 2014660000 1466490 1614650 1297130 673190 2124800 1762410 2054710 2056300 1357460 1936860 TRUE FALSE FALSE 1363696.624 1486699.254 1799413.474 1567220.341 1858287.771 1544981.773 1540599.825 1588125.379 1475125.726 1451857.649 0.939277087 1.023997948 1.239386985 1.07945868 1.279937997 1.06414136 1.061123194 1.0938575 1.016026417 1 20.46946858 -7.672288903 1.19244593 0.998429591 1.109648265 0.123559252 0.093435949 0.971331873 2.687953915 0.090655809 0.03005626 2.13E-08 7.672288903 0.111218673 AFITNIPFDVK ddPTM_HeLa_A485_30min_R1 1 AFITNIPFDVK 11 0 A0A087X0X3;P52272-2;P52272;M0R0Y6;M0QYQ7;M0R0N3;M0R019;M0R2T0 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 0 138.71 0.00049846 16107000 26184 26949 21893 41412 30234 31340 39016 44314 24147 48874 FALSE FALSE TRUE 32008.54047 30100.45112 29992.13174 43674.2327 27223.7968 32980.91394 30679.91287 33445.92202 28993.08141 36690.61126 0.872390494 0.820385654 0.817433417 1.190338106 0.741982645 0.898892463 0.836178843 0.911566226 0.790204372 1 15.16312332 -5.536776129 0.007345444 1.758544637 4.57E-06 0.02724876 0.119982997 48761.62302 91.69625013 10626.22505 11328.08031 2.91E-06 5.536776129 -1.758540063 AFKES(ph)PK ddPTM_HeLa_A485_30min_R1 4 AFKESPK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFKES(1)PK;AFKES(1)PK;AFKES(1)PK;AFKES(1)PK ;;; 98.254 0.0024009 2219890000 2291860 1939680 953710 5262540 2439170 1784300 3666330 4873060 2164280 11970400 TRUE FALSE FALSE 2801676.35 2166508.703 1306527.016 5550019.235 2196317.67 1877723.189 2882988.644 3677934.394 2598631.144 8986399.579 0.311768504 0.241087511 0.145389375 0.617602098 0.244404631 0.208951669 0.320816877 0.409277861 0.289173781 1 23.09931178 -13.9370512 0.376448594 9.999999688 0.293695465 0.740197276 0.122763441 277.1730582 2.210813218 2029.630917 0.085428564 1.16E-14 13.9370512 -9.706304223 AFKES(ph)PK ddPTM_HeLa_A486_30min_R1 3 AFKESPK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFKES(1)PK;AFKES(1)PK;AFKES(1)PK ;; 94.692 0.0027929 1075070000 1867160 1475480 695840 1383150 1315760 2470900 2835540 2275170 1262010 4968800 TRUE FALSE FALSE 1736281.726 1358557.591 965287.8832 3220043.101 1150725.112 2166065.48 2126057.901 1757163.458 1371402.043 3724580.139 0.466168444 0.36475456 0.259166899 0.864538547 0.308954317 0.581559639 0.570818138 0.471774909 0.368203124 1 21.82864637 -11.14361333 2.4569478 2.180692681 0.476158317 0.480615193 0.164358061 18682043.28 4674280.223 122976081.1 0.040622017 7.18E-12 11.14361333 -1.704534365 AFKPEETSSNSDPPS(ph)PPVLNNSHPVPR ddPTM_HeLa_A485_30min_R1 3 AFKPEETSSNSDPPSPPVLNNSHPVPR 27 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNSDPPS(1)PPVLNNSHPVPR ;; 187.69 1.43E-20 2244660000 1457450 1607920 1288590 1706580 1958740 1750740 2000040 2451300 1560570 2455450 TRUE FALSE FALSE 1781654.724 1795952.257 1765293.064 1799806.144 1763720.968 1842406.039 1572715.115 1850114.832 1873762.085 1843351.504 0.966530106 0.974286376 0.957654066 0.976377072 0.95680122 0.999487095 0.85318243 1.003669038 1.01649744 1 20.81389977 -7.484437868 24.99372002 1.008860456 0.956229015 0.295176109 0.036697649 640.2389723 416275.7304 0.019606778 0.009415253 3.28E-08 7.484437868 -0.052631441 AFKPEETSSNSDPPS(ph)PPVLNNSHPVPR ddPTM_HeLa_A486_30min_R1 2 AFKPEETSSNSDPPSPPVLNNSHPVPR 27 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNSDPPS(1)PPVLNNSHPVPR ; 182.74 2.19E-20 1351000000 1382570 1274760 862170 464450 1291930 1281600 1527320 1399560 1094690 1491570 TRUE FALSE FALSE 1285658.983 1173743.375 1196025.314 1081263.072 1129884.093 1123489.222 1145168.382 1080910.74 1189578.611 1118071.164 1.149890118 1.049793084 1.069721993 0.967078937 1.010565454 1.004845898 1.024235683 0.966763812 1.063956078 1 20.09258059 -3.924121112 0.997186497 1.006241967 1.313895182 0.658387186 0.030590576 1.962526971 1.001225793 0.009344658 0.756152753 0.000119091 3.924121112 0.307653215 AFLAELEQNS(ph)PK ddPTM_HeLa_A485_30min_R1 4 AFLAELEQNSPK 12 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 AFLAELEQNS(1)PK;AFLAELEQNS(1)PK;AFLAELEQNS(1)PK;AFLAELEQNS(1)PK ;;; 237.46 1.11E-27 1063490000 1634050 1480800 1219900 2364080 2280480 1583910 2482180 2216370 1518900 3266310 TRUE FALSE FALSE 1997538.785 1653966.679 1671191.774 2493223.704 2053427.404 1666841.078 1951841.965 1672801.782 1823729.298 2452079.029 0.814630671 0.674516057 0.681540747 1.016779506 0.837423011 0.679766459 0.795994722 0.682197336 0.743748173 1 21.22557405 AFLAELEQNS(ph)PK ddPTM_HeLa_A486_30min_R1 5 AFLAELEQNSPK 12 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 AFLAELEQNS(1)PK;AFLAELEQNS(1)PK;AFLAELEQNS(1)PK;AFLAELEQNS(1)PK;AFLAELEQNS(1)PK ;;;; 249.3 2.33E-28 1232880000 1848890 1895060 1096910 1376370 1886674.2 2054020 2882413.3 2632210 1479160 3181090 TRUE FALSE FALSE 1719292.359 1744888.544 1521662.928 3204258.918 1650029.929 1800615.896 2161203.005 2032913.244 1607374.78 2384524.359 0.721021093 0.731755387 0.638141071 1.343772776 0.691974449 0.755125814 0.906345535 0.852544549 0.674086123 1 21.18527009 -10.17129926 0.020201209 1.823105357 9.81E-06 0.053473313 0.196149484 5442.23627 19.75995732 1009.463796 782.4180758 6.74E-11 10.17129926 -1.823095545 AFLASLS(ph)PAMVVPEDQLTR ddPTM_HeLa_A485_30min_R1 4 AFLASLSPAMVVPEDQLTR 19 0 Q9H211;H3BSY1 Q9H211 CDT1 DNA replication factor Cdt1 1 0 AFLASLS(1)PAMVVPEDQLTR;AFLAS(0.013)LS(0.987)PAMVVPEDQLTR;AFLASLS(1)PAMVVPEDQLTR;AFLASLS(1)PAMVVPEDQLTR ;;; 319.29 7.98E-90 340949000 163586 245751 258725 182396 261873 219183 246590 298722 206114 234759 TRUE FALSE FALSE 199975.1413 274489.4417 354438.1439 192359.8316 235800.0046 230659.083 193904.032 225459.9611 247479.1892 176237.9017 1.134688619 1.557493814 2.011134611 1.091478222 1.337964208 1.308793856 1.100240244 1.279293267 1.404233634 1 17.4271647 -5.313982416 24.99997263 1.233012556 1.566747966 0.328075769 0.229000546 390.883872 185981.6413 0.064639174 0.095875487 4.85E-06 5.313982416 0.33373541 AFLASLS(ph)PAMVVPEDQLTR ddPTM_HeLa_A486_30min_R1 4 AFLASLSPAMVVPEDQLTR 19 0 Q9H211;H3BSY1 Q9H211 CDT1 DNA replication factor Cdt1 1 0 AFLASLS(1)PAMVVPEDQLTR;AFLASLS(1)PAMVVPEDQLTR;AFLASLS(1)PAMVVPEDQLTR;AFLASLS(1)PAMVVPEDQLTR ;;; 360.07 3.35E-116 289878000 207184 245615 239544 90746 275879 196614 224746 247963 208969 215640 TRUE FALSE FALSE 192661.4715 226151.5729 332301.852 211261.274 241275.6834 172357.7637 168512.1737 191507.2379 227082.6012 161642.3404 1.191899789 1.399086231 2.055784711 1.306967429 1.492651509 1.066290944 1.042500209 1.184759126 1.404846036 1 17.30244562 -6.251434189 22.61130851 1.14515302 1.505611616 0.352342096 0.236414051 225.4007752 509395.3224 0.081137446 0.080020227 5.60E-07 6.251434189 0.360458596 AFLDFYHSFLEK ddPTM_HeLa_A486_30min_R1 1 AFLDFYHSFLEK 12 0 M0QZR4;Q92888;Q92888-3 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 0 0 144.65 0.00011307 9631000 14036 17656 14644 5000.8 17729 18630 20244 17249 17789 18019 FALSE FALSE TRUE 13052.14888 16256.87426 20314.54898 11642.11513 15505.2635 16331.62002 15178.73708 13321.77924 19330.96484 13506.92512 0.966330143 1.203595498 1.504009892 0.861936749 1.147949172 1.209129382 1.123774431 0.986292522 1.431189162 1 13.72141166 -5.270968701 24.99571892 1.114498345 1.222540222 0.074313362 0.186819376 1999.451712 5244621.321 0.0518068 0.077973306 5.36E-06 5.270968701 0.108041878 AFLS(ph)PPTLLEGPLR ddPTM_HeLa_A485_30min_R1 2 AFLSPPTLLEGPLR 14 0 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 0 AFLS(0.995)PPT(0.005)LLEGPLR;AFLS(0.998)PPT(0.002)LLEGPLR ; 207.06 4.75E-22 199920000 203191 208834 148781 182779 170790 191763 239178 285028 179537 361253 TRUE FALSE FALSE 248390.1369 233255.3197 203821.2832 192763.7539 153785.5479 201803.4142 188075.6664 215124.4361 215568.4291 271199.2755 0.915895282 0.860088285 0.751555412 0.710782703 0.56705737 0.744114872 0.693496198 0.793233816 0.794870962 1 18.0489938 -9.575779047 11.87609966 1 0.753341569 0.389950627 0.090176218 0 0 0.095727306 0.023217282 2.66E-10 9.575779047 -0.246658431 AFLTLAEDILR ddPTM_HeLa_A485_30min_R1 1 AFLTLAEDILR 11 0 P61026 P61026 RAB10 Ras-related protein Rab-10 0 0 192.26 7.47E-10 6197400 6405.6 7073.8 6833.9 4584.4 6042.4 5256.1 8613 7405.5 5559.6 10259 FALSE FALSE TRUE 7830.503621 7901.019376 9362.043992 4834.834164 5440.79744 5531.301269 6772.762188 5589.289514 6675.360724 7701.620103 1.016734598 1.025890562 1.215594105 0.627768456 0.706448431 0.718199703 0.879394478 0.725729059 0.866747598 1 12.91094625 -5.260094049 24.99999887 0.775109785 1.080054837 0.590619721 0.112811179 79.55341698 1478309.863 0.030471331 0.049277777 5.49E-06 5.260094049 0.304945052 AFLTLAEDILR ddPTM_HeLa_A486_30min_R1 1 AFLTLAEDILR 11 0 P61026 P61026 RAB10 Ras-related protein Rab-10 0 0 190.88 1.74E-09 5681800 8236 7831.2 9301.9 2533 11569 7450 9119.7 8228.8 8410.7 10755 FALSE FALSE TRUE 7658.698931 7210.627191 12903.84479 5896.952011 10117.90814 6530.894746 6837.854602 6355.281873 9139.746248 8061.877997 0.949989436 0.894410359 1.600600356 0.731461331 1.255031166 0.810095954 0.848171432 0.788312832 1.1336994 1 12.97690024 -6.277976245 24.88767462 0.898582699 1.084497235 0.111972246 0.237149738 1679.080536 2526977.032 0.081042108 0.071673611 5.27E-07 6.277976245 0.185914536 AFMES(ph)PK ddPTM_HeLa_A485_30min_R1 2 AFMESPK 7 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFMES(1)PK;AFMES(1)PK ; 91.867 0.0063977 381860000 538280 536370 348870 1020230 703310 466860 833250 877420 526090 1910930 TRUE FALSE FALSE 658018.529 599093.8057 477931.5307 1075962.582 633285.9869 491304.0677 655219.3305 662231.3693 631671.4374 1434570.319 0.458686842 0.417612018 0.333153087 0.750024288 0.441446459 0.34247472 0.456735597 0.461623498 0.440321 1 20.45218726 -10.30739751 3.498440702 1.002047951 0.456155946 0.696042151 0.107889347 85390336.64 128733060.3 1833684.015 0.026796262 4.93E-11 10.30739751 -0.545892004 AFMGT(ph)PVQK ddPTM_HeLa_A485_30min_R1 5 AFMGTPVQK 9 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFMGT(1)PVQK;AFMGT(1)PVQK;AFMGT(1)PVQK;AFMGT(1)PVQK;AFMGT(1)PVQK ;;;; 162.26 6.00E-05 1850380000 3121120 3092330 2721920 3187100 4388680 2817170 3652540 3814470 3122230 4653410 TRUE FALSE FALSE 3815402.376 3453951.094 3728871.477 3361203.203 3951727.61 2964672.665 2872144.99 2878965.252 3748832.922 3493400.527 1.092174329 0.988707441 1.06740451 0.962157983 1.131197977 0.848649516 0.822163095 0.824115423 1.073118554 1 21.73620063 -6.271797185 24.90100323 0.89690114 1.041288704 0.367460113 0.086761304 693.0695099 1666190.467 0.029814362 0.026584339 5.35E-07 6.271797185 0.144387564 AFMGT(ph)PVQK ddPTM_HeLa_A486_30min_R1 4 AFMGTPVQK 9 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFMGT(1)PVQK;AFMGT(1)PVQK;AFMGT(1)PVQK;AFMGT(1)PVQK ;;; 157.68 0.00013252 1633950000 3146050 3005300 2169230 941910 2928320 2790280 3282050 2996980 2461640 3001330 TRUE FALSE FALSE 2925528.141 2767149.083 3009213.95 2192814.081 2561022.8 2446043.623 2460846.376 2314633.078 2675016.937 2249777.433 1.30036336 1.229965704 1.337560732 0.97468045 1.138344959 1.087238047 1.0938177 1.028827583 1.189014032 1 21.10135085 -5.252853063 24.9997452 1.078499858 1.283363517 0.701663263 0.064491488 341.8778974 995403.0873 0.016457627 0.027942621 5.59E-06 5.252853063 0.20486366 AFNQGK(ac)IFK ddPTM_HeLa_A485_30min_R1 2 AFNQGKIFK 9 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 ; AFNQGK(1)IFK;AFNQGK(1)IFK 214.32 3.43E-16 352570000 194760 242720 215259 192856 294890 255840 288440 327090 232670 293370 FALSE TRUE FALSE 238083.6901 271103.9926 294892.2618 203391.2349 265529.7162 269235.3868 226812.4377 246870.6646 279364.7348 220238.2581 1.081027848 1.230957759 1.33896928 0.923505465 1.20564755 1.222473285 1.029850307 1.120925432 1.268465966 1 17.74870558 -10.8114529 2.55867406 0.948353951 1.156994051 0.142222738 0.11637034 41421959.93 28008530.25 13240627.26 0.029745911 1.54E-11 10.8114529 0.2086401 AFNQGK(ac)IFK ddPTM_HeLa_A486_30min_R1 2 AFNQGKIFK 9 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 ; AFNQGK(1)IFK;AFNQGK(1)IFK 202.17 3.39E-11 351990000 415950 484460 352440 144549 544680 430530 504170 511080 376210 468040 FALSE TRUE FALSE 386794.053 446069.6252 488914.2067 336517.3771 476361.1555 377415.5859 378021.3334 394718.2408 408820.1857 350839.7376 1.102480738 1.271434155 1.393554248 0.959176915 1.357774233 1.075749254 1.077475819 1.125067085 1.165261919 1 18.42045264 -6.367864346 21.74584464 1.095821072 1.215603567 0.214828482 0.122126129 19.02141738 3869.731127 0.041805154 0.03686868 4.29E-07 6.367864346 0.119782495 AFQGYNACIFAYGQTGSGKSFSMMGHAEQLGLIPRLCCALFK ddPTM_HeLa_A485_30min_R1 1 AFQGYNACIFAYGQTGSGKSFSMMGHAEQLGLIPRLCCALFK 42 2 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 0 0 16.379 0.037613 118380000 41262 142600 97574 6423.2 116840 120930 95018 207210 84018 21314 FALSE FALSE TRUE 50440.58955 159275.8295 133670.683 6774.083152 105206.9993 127261.7078 74716.62807 156391.4226 100879.6419 16000.81206 3.152376853 9.954234135 8.353993693 0.42335871 6.57510375 7.953453073 4.669552259 9.77396785 6.304657638 1 13.9658575 AFQLEEGEET(ph)EPDCK ddPTM_HeLa_A485_30min_R1 4 AFQLEEGEETEPDCK 15 0 P38432 P38432 COIL Coilin 1 0 AFQLEEGEET(1)EPDCK;AFQLEEGEET(1)EPDCK;AFQLEEGEET(1)EPDCK;AFQLEEGEET(1)EPDCK ;;; 325.33 2.66E-78 528050000 511033 286140 244306 569875 506613 290496 563153 404478 283153 620490 TRUE FALSE FALSE 624710.5278 319601.5839 334684.9558 601005.8283 456172.8309 305705.9214 442830.761 305279.1363 339979.2099 465813.2623 1.341117951 0.686115252 0.718495979 1.290229105 0.979304086 0.65628428 0.950661557 0.655368065 0.729861593 1 18.82939219 -6.194919209 11.08060254 0.78645461 0.985751518 0.172901177 0.221389583 1.63420119 268.7544526 0.073419451 0.073421639 6.38E-07 6.194919209 0.199296909 AFQLEEGEET(ph)EPDCK ddPTM_HeLa_A486_30min_R1 2 AFQLEEGEETEPDCK 15 0 P38432 P38432 COIL Coilin 1 0 AFQLEEGEET(1)EPDCK;AFQLEEGEET(1)EPDCK ; 343.69 1.10E-90 364670000 218129 346450 242147 193837 340590 466730 622330 460250 218620 397520 TRUE FALSE FALSE 202839.2835 318996.0403 335912.8033 451262.332 297870.0263 409149.598 466616.4517 355461.1222 237570.1576 297978.4046 0.680718067 1.07053409 1.127305866 1.514412874 0.999636288 1.373084733 1.565940499 1.192909005 0.797273071 1 18.18484825 -4.243478425 1.780254884 1.228718051 0.4836516 0.313138232 0.22709196 1.10006978 3.391396188 0.063001527 1.404171425 5.71E-05 4.243478425 -0.745066451 AFRHRS(ph)S(ph)LNQHHRTHTGEK ddPTM_HeLa_A485_30min_R1 1 AFRHRSSLNQHHRTHTGEK 19 3 Q49AA0 Q49AA0 ZFP69 Zinc finger protein ZFP69 2 0 AFRHRS(0.809)S(0.824)LNQHHRT(0.198)HT(0.169)GEK 43.176 0.037758 2677700000 948830 1158400 626890 525810 1126300 1792000 1996500 3238500 830480 800950 TRUE FALSE FALSE 1159893.96 1293864.803 858802.6981 554533.6689 1014161.617 1885826.349 1569931.465 2444252.797 997149.7184 601287.9054 1.92901595 2.151822433 1.428272031 0.922243178 1.686648955 3.136311794 2.610948018 4.065029041 1.65835652 1 19.19769641 -6.198428625 7.820099828 2.692025261 1.599354492 0.196773555 0.832364071 0.403836795 45.66427286 0.266708547 0.266432325 6.33E-07 6.198428625 -1.092670769 AFRYS(ph)TYLNVHTRTHTGAK ddPTM_HeLa_A486_30min_R1 1 AFRYSTYLNVHTRTHTGAK 19 2 Q147U1 Q147U1 ZNF846 Zinc finger protein 846 1 0 AFRY(0.002)S(0.249)T(0.249)Y(0.002)LNVHT(0.249)RT(0.249)HT(0.001)GAK 50.215 0.015581 420240000 296900 311860 367390 22528 509870 241400 192050 271610 282510 86475 TRUE FALSE FALSE 276088.8432 287147.0778 509653.247 52446.3225 445917.3503 211618.5224 143997.0587 209770.3322 306998.1943 64821.09714 4.259243601 4.429839828 7.862459439 0.80909341 6.879200907 3.264655054 2.221453586 3.236142883 4.736084513 1 15.98417582 -8.357262721 0.194882491 8.41E-10 5.70534639 0.223404776 1.916625385 9.114208325 1.032484156 16.43773133 8.141792846 4.39E-09 8.357262721 5.705346389 AFS(ph)DPFVEAEK ddPTM_HeLa_A485_30min_R1 3 AFSDPFVEAEK 11 0 A0A087WYC1;P34932;A0A087WTS8;P34932-2 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 AFS(1)DPFVEAEK;AFS(1)DPFVEAEK;AFS(1)DPFVEAEK ;; 168.76 4.14E-08 131358000 354220 276721 203460 486820 401800 321966 516910 445720 277216 624780 TRUE FALSE FALSE 433015.017 309081.1138 278728.3207 513413.7439 361795.3812 338823.6419 406467.9557 336406.4711 332850.7084 469033.8442 0.923206336 0.658974011 0.594260572 1.094619824 0.77136306 0.72238634 0.866606879 0.717232829 0.709651793 1 18.8393325 -11.34284296 2.305105242 2.342979198 0.78236319 0.181874997 0.137219759 10390025.53 1362260.014 72777683.5 0.034635325 4.54E-12 11.34284296 -1.560616008 AFS(ph)DPFVEAEK ddPTM_HeLa_A486_30min_R1 2 AFSDPFVEAEK 11 0 A0A087WYC1;P34932;A0A087WTS8;P34932-2 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 AFS(1)DPFVEAEK;AFS(1)DPFVEAEK ; 170.66 3.33E-08 111429000 351700 351730 186977 186137 341290 436330 544490 499750 290740 480440 TRUE FALSE FALSE 327047.6462 323857.6338 259379.5018 433336.3428 298482.2258 382500.0409 408252.843 385967.8345 315941.5773 360134.6969 0.908125901 0.89926807 0.720229137 1.203261853 0.828807189 1.062102719 1.133611525 1.071731877 0.877287248 1 18.45817708 -5.251578795 24.99467926 1.026110859 0.848213753 0.348889277 0.114302514 796.716149 2019517.925 0.030569683 0.052127274 5.60E-06 5.251578795 -0.177897106 AFS(ph)EGQITR ddPTM_HeLa_A486_30min_R1 1 AFSEGQITR 9 0 Q96GN5-5;Q96GN5-2;Q96GN5;Q96GN5-4 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 AFS(1)EGQITR 84.479 0.0040592 0 151800 186360 137650 57547 184280 180720 202120 180720 163880 169600 TRUE FALSE FALSE 141159.6039 171592.1549 190951.7664 133972.3243 161165.8841 158424.6038 151547.4382 139574.0011 178085.2503 127131.0561 1.110347135 1.349726496 1.502007238 1.053812722 1.267714507 1.246151874 1.192056787 1.097874944 1.400800527 1 16.95595698 -13.55670434 0.226096367 7.00E-12 1.275235285 0.212093753 0.136275792 198.5785883 2.389744967 91.08330665 0.246970727 2.78E-14 13.55670434 1.275235285 AFS(ph)FSK ddPTM_HeLa_A485_30min_R1 4 AFSFSK 6 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C103 Q9H8V3-2 ECT2 Protein ECT2 1 0 AFS(1)FSK;AFS(0.991)FS(0.009)K;AFS(0.998)FS(0.002)K;AFS(0.917)FS(0.083)K ;;; 137.9 0.0050592 1703440000 2432920 2203150 1885710 2745190 3095510 2406130 3185250 3306760 2324790 3523000 TRUE FALSE FALSE 2974114.661 2460789.228 2583312.6 2895152.779 2787310.155 2532111.246 2504695.316 2495771.925 2791354.029 2644780.936 1.124522118 0.930432156 0.976758629 1.094666382 1.053890747 0.957399236 0.947033186 0.943659224 1.055419748 1 21.3347168 -6.265297385 24.89322828 0.975076661 1.030148181 0.170728363 0.059656221 619.5664998 3997664.221 0.021127411 0.019341333 5.43E-07 6.265297385 0.05507152 AFS(ph)FSK ddPTM_HeLa_A486_30min_R1 4 AFSFSK 6 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C103 Q9H8V3-2 ECT2 Protein ECT2 1 0 AFS(0.994)FS(0.006)K;AFS(1)FSK;AFS(0.99)FS(0.01)K;AFS(0.897)FS(0.103)K ;;; 147.29 0.0037645 2262140000 2659860 2808860 1617930 1213680 2411370 2800570 3284910 3450510 2149180 2980630 TRUE FALSE FALSE 2473417.55 2586275.704 2244435.826 2825508.376 2108913.489 2455064.148 2462990.774 2664904.197 2335472.653 2234260.847 1.107040636 1.15755316 1.004554069 1.264627798 0.943897617 1.098826106 1.102373869 1.192745332 1.045299906 1 21.0913662 -7.994557733 24.68542321 0.999999969 1.107022933 0.152183977 0.084817136 169.1381507 767183.0812 0.077083698 0.019902925 1.01E-08 7.994557733 0.107022965 AFS(ph)HFSR ddPTM_HeLa_A485_30min_R1 2 AFSHFSR 7 0 A0A0A0MS76 A0A0A0MS76 ZNF99 1 0 AFS(0.753)HFS(0.247)R;AFS(0.5)HFS(0.5)R ; 89.752 0.0068773 400490000 97768 108851 151322 55606 153571 127263 106933 139519 142689 68562 TRUE FALSE FALSE 119516.1543 121580.1776 207302.3048 58643.61498 138280.932 133926.2939 84085.89099 105301.7465 171325.3735 51470.75519 2.322020609 2.362121502 4.027574573 1.139357967 2.68659225 2.601988127 1.63366344 2.045855867 3.328596459 1 15.65146533 -10.88787906 2.690508473 0.281350705 2.439425474 0.244741256 0.769054323 5528298.281 3638365.755 25008124.25 0.187797229 1.29E-11 10.88787906 2.158074769 AFS(ph)HFSR ddPTM_HeLa_A486_30min_R1 3 AFSHFSR 7 0 A0A0A0MS76 A0A0A0MS76 ZNF99 1 0 AFS(0.998)HFS(0.002)R;AFS(0.783)HFS(0.217)R;AFS(0.753)HFS(0.247)R ;; 94.874 0.0057155 581630000 135938 127660 107385 81751.6 150089 134173 157905 161305 100246 144556 TRUE FALSE FALSE 126409.4482 117543.7567 148967.3479 190321.8563 131263.4381 117620.0994 118395.4989 124579.3728 108935.404 108358.2367 1.166588273 1.084769928 1.374767183 1.756413376 1.211384036 1.085474469 1.092630357 1.149699151 1.005326474 1 16.7254493 -5.99852701 24.99945659 1.085476598 1.348434403 0.373625778 0.169597533 62.05769822 1053200.123 0.058098015 0.06538834 1.00E-06 5.99852701 0.262957805 AFS(ph)PQPPK ddPTM_HeLa_A486_30min_R1 2 AFSPQPPK 8 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y9Z7;H0Y307 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 AFS(1)PQPPK;AFS(1)PQPPK ; 87.298 0.0040919 109050000 872700 987750 603990 404600 887090 1069540 1389470 1253130 777720 1519100 TRUE FALSE FALSE 811528.2366 909477.0927 837871.1034 941929.2474 775822.9004 937591.0291 1041809.91 967819.6546 845133.3958 1138707.472 0.712674902 0.798692478 0.735808909 0.827191592 0.681318881 0.823381818 0.914905658 0.849928255 0.742186572 1 20.11896574 -6.514407116 24.25040236 0.864948385 0.756672691 0.405049783 0.071287174 306.9669861 878713.3059 0.025224398 0.020550589 3.06E-07 6.514407116 -0.108275694 AFS(ph)TEK ddPTM_HeLa_A485_30min_R1 3 AFSTEK 6 0 H0YJD9;Q9NZ32 H0YJD9 ACTR10 Actin-related protein 10 1 0 AFS(0.943)T(0.057)EK;AFS(0.993)T(0.007)EK;AFS(0.957)T(0.043)EK ;; 111.95 0.0085498 2814670000 1420220 1305280 1143840 2252210 2064320 1621720 2659970 2966260 2068970 4443700 TRUE FALSE FALSE 1736143.039 1457921.142 1566994.015 2375242.529 1858789.053 1706630.752 2091645.68 2238780.084 2484193.301 3335967.37 0.520431661 0.437030996 0.469727021 0.712010121 0.557196413 0.511584965 0.626998243 0.671103712 0.744669544 1 21.66967375 -9.665757889 0.189880592 1.330297916 0.414461622 0.820336431 0.067351306 6.986879809 0.341140025 1.501539118 0.26574726 2.16E-10 9.665757889 -0.915836294 AFS(ph)TEK ddPTM_HeLa_A486_30min_R1 2 AFSTEK 6 0 H0YJD9;Q9NZ32 H0YJD9 ACTR10 Actin-related protein 10 1 0 AFS(0.941)T(0.059)EK;AFS(0.947)T(0.053)EK ; 125.31 0.0056066 2237700000 2535400 2879200 1189120 1599350 2469200 4323700 5418000 5805100 2605100 5390400 TRUE FALSE FALSE 2357681.553 2651041.706 1649579.11 3723367.627 2159489.912 3790285.854 4062359.094 4483405.454 2830912.166 4040608.754 0.58349662 0.65609958 0.408250145 0.921486799 0.534446674 0.938048221 1.005382936 1.109586631 0.700615263 1 21.94614123 -6.294964476 9.657120922 0.961303037 0.627659975 0.530867847 0.154869547 0.414156946 116.5506595 0.052689049 0.046737906 5.07E-07 6.294964476 -0.333643063 AFS(ph)WLR ddPTM_HeLa_A485_30min_R1 6 AFSWLR 6 0 Q9P206-2 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 AFS(1)WLR;AFS(1)WLR;AFS(1)WLR;AFS(1)WLR;AFS(1)WLR;AFS(1)WLR ;;;;; 113.14 0.0082422 2805110000 649022 667872 619213 790328 921939 720258 1023538 1005058 736759 1165409 TRUE FALSE FALSE 793394.7048 745973.8207 848285.6563 833501.6174 830147.516 757969.5951 804850.7448 758565.9496 884619.7733 874893.9841 0.90684668 0.852644817 0.969586798 0.952688706 0.948854983 0.866355934 0.919940884 0.867037565 1.011116535 1 19.73874868 -7.777085361 24.9992371 1.005558378 0.912064708 0.505753037 0.037564798 236.6424935 378097.764 0.037135311 0.009723364 1.67E-08 7.777085361 -0.09349367 AFS(ph)WLR ddPTM_HeLa_A486_30min_R1 6 AFSWLR 6 0 Q9P206-2 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 AFS(1)WLR;AFS(1)WLR;AFS(1)WLR;AFS(1)WLR;AFS(1)WLR;AFS(1)WLR ;;;;; 111.82 0.0085838 1886187000 1045812 1216200 806760 607660 1195953 1233526 1468024 1595810 988258 1350143 TRUE FALSE FALSE 972505.9794 1119823.883 1119159.078 1414663.189 1045945.423 1081346.104 1100708.868 1232478.899 1073920.999 1012058.405 0.960918831 1.106481481 1.105824597 1.397807856 1.033483263 1.068462154 1.087594217 1.217794243 1.061125518 1 19.94886112 -8.933807531 14.46954229 0.999821923 1.121644832 0.083981363 0.11280368 0 0 0.109928579 0.026661597 1.16E-09 8.933807531 0.121822909 AFSVFLFNTENK ddPTM_HeLa_A485_30min_R1 2 AFSVFLFNTENK 12 0 Q13907-2;Q13907;C9JD53 Q13907-2 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 0 0 ; ; 268.58 5.08E-50 26343000 25462.5 30088 24450 32332 36940 31509 40900 40749 23863.2 46947 FALSE FALSE TRUE 31126.54528 33606.52987 33495.07245 34098.21529 33262.1239 33158.76252 32161.38088 30755.24386 28652.32535 35243.9769 0.883173467 0.953539663 0.950377211 0.96749057 0.943767612 0.940834873 0.912535523 0.872638294 0.812970836 1 15.10508911 -6.971066605 3.150814101 0.882815099 0.942381673 0.134774427 0.048039714 0.368922553 7.525741139 0.022454231 0.013432209 1.07E-07 6.971066605 0.059566574 AFSVFLFNTENK ddPTM_HeLa_A486_30min_R1 2 AFSVFLFNTENK 12 0 Q13907-2;Q13907;C9JD53 Q13907-2 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 0 0 ; ; 343.7 1.44E-108 45265000 55047 59818 42382 23033.4 66255 62860 73444 71619 53990 76962 FALSE FALSE TRUE 51188.48956 55077.80383 58793.44543 53622.91924 57944.6801 55104.97231 55067.53439 55312.91713 58669.89667 57690.21426 0.887299349 0.954716576 1.019123367 0.929497661 1.004410901 0.955187513 0.954538566 0.958792021 1.016981778 1 15.816039 -4.31592479 3.680069686 0.976160222 0.88215101 0.477116419 0.02889187 0.196539677 4.71590119 0.00692653 0.045260301 4.83E-05 4.31592479 -0.094009213 AFTTTLNLLPYHK ddPTM_HeLa_A485_30min_R1 1 AFTTTLNLLPYHK 13 0 O43847;O43847-2;G3V1R5;H0Y5G9 O43847 NRD1 Nardilysin 0 0 85.845 0.0073337 14776000 13209 13762 14580 12309 19529 14741 17836 20302 12251 16279 FALSE FALSE TRUE 16147.29648 15371.34619 19973.74872 12981.4095 17584.62419 15512.81597 14025.19289 15322.90267 14709.66333 12220.94489 1.321280525 1.257787047 1.634386612 1.062226335 1.438892356 1.269363057 1.14763572 1.253823072 1.2036437 1 13.57706821 -8.241578705 0.267596712 0.933440345 1.393359291 0.343513473 0.139999752 3.51293999 0.683314038 0.542026308 0.259605034 5.73E-09 8.241578705 0.459918946 AFTTTLNLLPYHK ddPTM_HeLa_A486_30min_R1 2 AFTTTLNLLPYHK 13 0 O43847;O43847-2;G3V1R5;H0Y5G9 O43847 NRD1 Nardilysin 0 0 ; ; 113.61 0.00058667 40383000 29578 33858 29161 12785.9 38866 31488 36046 36710 27844 38945 FALSE FALSE TRUE 27504.73494 31174.96877 40452.92016 29766.22136 33991.06387 27603.33071 27026.90954 28351.93437 30257.54034 29192.91851 0.94217147 1.067894899 1.385710036 1.019638422 1.164359907 0.945548856 0.925803617 0.971192187 1.036468496 1 14.83333083 -6.265149439 24.90001787 0.9708772 1.122920421 0.280603174 0.111787472 406.8036337 2730248.465 0.039637286 0.036255559 5.43E-07 6.265149439 0.152043221 AFVAIGDYNGHVGLGVK ddPTM_HeLa_A485_30min_R1 2 AFVAIGDYNGHVGLGVK 17 0 H0YEN5;P15880;E9PPT0;E9PMM9;I3L404;E9PM36 H0YEN5 RPS2 40S ribosomal protein S2 0 0 ; ; 236.43 2.68E-33 113067000 190781 198708 186820 210146 265385 223809 269097 269830 200727 336711 FALSE FALSE TRUE 233219.5753 221945.1721 255932.4922 221625.7439 238962.3376 235527.2932 211602.2276 203653.7694 241011.0677 252775.1444 0.922636503 0.878034004 1.012490737 0.876770318 0.94535536 0.931766031 0.837116435 0.805671657 0.953460311 1 17.94749508 -6.703823907 24.99596811 0.88286753 0.927900522 0.023296562 0.062737172 184.4948367 80040.60075 0.023116625 0.017906056 1.98E-07 6.703823907 0.045032992 AFVAIGDYNGHVGLGVK ddPTM_HeLa_A486_30min_R1 2 AFVAIGDYNGHVGLGVK 17 0 H0YEN5;P15880;E9PPT0;E9PMM9;I3L404;E9PM36 H0YEN5 RPS2 40S ribosomal protein S2 0 0 ; ; 224.59 1.75E-25 93150000 169557 178078 138458 74482 211551 172289 197393 185398 166959 211717 FALSE FALSE TRUE 157671.9299 163966.4507 192072.6456 173397.8601 185016.3009 151033.7349 148003.1836 143186.9226 181431.1405 158701.6852 0.993511378 1.033173974 1.210274771 1.092602514 1.165811823 0.951683246 0.932587347 0.902239459 1.143221261 1 17.27595792 -6.272954157 24.91357394 0.976501292 1.101231925 0.314304188 0.082932446 845.8949154 1830186.865 0.029671728 0.026395969 5.33E-07 6.272954157 0.124730633 AFVDRT(ph)PPPAAVAQR ddPTM_HeLa_A485_30min_R1 1 AFVDRTPPPAAVAQR 15 1 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 AFVDRT(1)PPPAAVAQR 67.995 0.013007 557580000 396020 464360 411530 391690 470300 377670 458700 506450 349690 442090 TRUE FALSE FALSE 484113.2827 518662.8626 563772.0722 413087.0329 423475.2807 397444.2172 360694.9978 382242.3434 419869.5755 331885.0991 1.458677368 1.562778396 1.698696548 1.244668815 1.275969551 1.197535588 1.086806846 1.151730959 1.265105233 1 18.34032433 -5.386843354 4.656169713 1.17538887 1.57060199 0.792431625 0.093994783 0.101363885 3.390787666 0.027364177 0.041258714 4.10E-06 5.386843354 0.39521312 AFVEDS(ph)EDEDGAGEGGSSLLQK ddPTM_HeLa_A485_30min_R1 2 AFVEDSEDEDGAGEGGSSLLQK 22 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 1 0 AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK ; 285.4 1.36E-73 381150000 140331 132116 132512 171746 168205 145289 191088 212672 144635 211589 TRUE FALSE FALSE 171547.1468 147565.8169 181533.7031 181128.0491 151457.9196 152896.1074 150260.4878 160513.8585 173661.9178 158843.7563 1.079974126 0.928999794 1.142844436 1.140290644 0.953502505 0.962556609 0.94596408 1.01051412 1.093287655 1 17.27724886 -5.778641218 24.99952611 0.990825488 1.067726543 0.244130126 0.067437654 388.7032525 564901.9918 0.022206936 0.025237618 1.66E-06 5.778641218 0.076901055 AFVEDS(ph)EDEDGAGEGGSSLLQK ddPTM_HeLa_A486_30min_R1 4 AFVEDSEDEDGAGEGGSSLLQK 22 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 1 0 AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK ;;; 332.66 9.10E-115 965077000 484719 504447 356807 187900 574339 524643 642377 581707 421549 541289 TRUE FALSE FALSE 450742.7012 464472.7826 494972.226 437440.6959 502300.0471 459917.8808 481647.4802 449265.0147 458089.2067 405746.7112 1.110896746 1.144735791 1.219904468 1.078112734 1.237964556 1.133509818 1.18706441 1.107254852 1.129002883 1 18.63021988 -8.409048407 0.956634598 1.000011207 1.158894953 0.491170895 0.04702837 1.100276851 1.677253244 0.042974158 0.013978253 3.90E-09 8.409048407 0.158883746 AFVGNQLPFIGFTYYR ddPTM_HeLa_A485_30min_R1 2 AFVGNQLPFIGFTYYR 16 0 E9PF63;O75116;D6REE7 E9PF63 ROCK2 Rho-associated protein kinase 2 0 0 ; ; 295.34 2.63E-67 72032000 51222 58783 63595 52863 56585 66370 84380 86928 38329 66431 FALSE FALSE TRUE 62616.15719 65657.16051 87121.43691 55750.77183 50951.19872 69845.03057 66351.52368 65608.7717 46021.27873 49870.97427 1.255563143 1.316540562 1.746936734 1.117900194 1.021660384 1.40051466 1.330463755 1.315570282 0.922806891 1 15.60591277 -7.757656279 24.77424605 0.961403343 1.314982219 0.378113504 0.180425059 87.363492 572148.6049 0.13958216 0.048182296 1.75E-08 7.757656279 0.353578876 AFVGNQLPFIGFTYYR ddPTM_HeLa_A486_30min_R1 2 AFVGNQLPFIGFTYYR 16 0 E9PF63;O75116;D6REE7 E9PF63 ROCK2 Rho-associated protein kinase 2 0 0 ; ; 238.13 2.51E-32 62764000 14436.7 35045 35038 11988.6 44579 32553 36837 35994 33341 34600 FALSE FALSE TRUE 13424.76188 32267.90657 48605.65195 27910.06667 38987.48614 28536.94183 27619.99298 27798.95194 36231.02472 25935.93479 0.517612416 1.244138946 1.874065937 1.076115702 1.503222708 1.100285841 1.064931463 1.071831502 1.396943084 1 14.66266475 AFVGNQLPFVGFTYYSNRR ddPTM_HeLa_A486_30min_R1 1 AFVGNQLPFVGFTYYSNRR 19 1 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 0 0 59.434 0.027122 12502000 7159 6294.5 6827.9 3205.6 8421.3 6399.4 9677.8 7572.1 6202.4 7237.9 FALSE FALSE TRUE 6657.191069 5795.700896 9471.845738 7462.798802 7365.022028 5609.907092 7256.312079 5848.098128 6740.029026 5425.482729 1.227022811 1.068236908 1.745807002 1.37550872 1.357486955 1.03399225 1.337450037 1.077894525 1.242291122 1 12.40553579 -6.232563798 21.3650903 1.155639355 1.361763581 0.254766922 0.183749585 187.7923271 138946.6929 0.061886983 0.061860643 5.85E-07 6.232563798 0.206124227 AFVHWYVGEGMEEGEFSEAR ddPTM_HeLa_A485_30min_R1 3 AFVHWYVGEGMEEGEFSEAR 20 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 217.09 1.12E-29 115719000 62991 71374 80291 76219 92746 74578 91161 79152 85330 112580 FALSE FALSE TRUE 77003.13063 79720.56843 109993.9821 80382.65097 83511.88259 78482.78876 71683.70763 59739.84789 102454.9483 84515.87788 0.911108452 0.943261437 1.301459381 0.951095261 0.988120631 0.928615909 0.848168527 0.706847629 1.212256808 1 16.36693478 -5.851695259 2.216218623 0.918202405 1.044399209 0.059072237 0.156199539 0.719793895 7.236285985 0.054021062 0.065184798 1.41E-06 5.851695259 0.126196804 AFVHWYVGEGMEEGEFSEAR ddPTM_HeLa_A486_30min_R1 1 AFVHWYVGEGMEEGEFSEAR 20 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 165.74 2.68E-15 16694000 10089 9609.4 10093 5729.6 14154 10694 15716 15432 11380 14009 FALSE FALSE TRUE 9381.8132 8847.916147 14001.2799 13338.79836 12378.67334 9374.683009 11783.69057 11918.47048 12366.42756 10501.05522 0.893416234 0.842574005 1.333321234 1.270234094 1.178802804 0.892737236 1.122143473 1.134978365 1.177636657 1 13.35824669 -4.736473903 24.96930047 1.140302074 0.867994783 0.45643943 0.11816876 211.2078516 211236.8896 0.032091074 0.084827063 1.83E-05 4.736473903 -0.272307291 AFVYLSNLLYPVPLIHR ddPTM_HeLa_A485_30min_R1 2 AFVYLSNLLYPVPLIHR 17 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 0 0 ; ; 142.1 9.32E-09 23187000 16084.1 25308.3 26187.5 15758 28455 18627.7 26245.5 21907 16055.2 26026.8 FALSE FALSE TRUE 19661.95256 28267.88553 35875.346 16618.81964 25621.92029 19603.01757 20637.93452 16534.2739 19277.33137 19538.79775 1.00630309 1.446756648 1.836108161 0.850554873 1.31133556 1.003286785 1.056254064 0.846227804 0.986618093 1 14.25405408 -5.28425247 24.99691997 1.015830652 1.431426139 0.431996366 0.221592439 735.7371294 806165.3443 0.06321399 0.093833576 5.20E-06 5.28425247 0.415595487 AFVYLSNLLYPVPLIHR ddPTM_HeLa_A486_30min_R1 2 AFVYLSNLLYPVPLIHR 17 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 0 0 ; ; 130.98 3.04E-06 17612200 9112.6 12142.4 11166.7 3198.8 13499.8 9494.9 11230.6 12097.7 10158.8 11112.3 FALSE FALSE TRUE 8473.853798 11180.192 15490.74529 7446.968058 11806.5292 8323.515775 8420.585095 9343.317801 11039.37296 8329.707751 1.017305054 1.342206994 1.859698534 0.89402513 1.417400173 0.999256639 1.010910028 1.121686148 1.325301354 1 13.02405016 -5.303339743 24.9926907 1.118958028 1.399985497 0.239769526 0.241561692 714.8010451 426362.3737 0.067823869 0.100600112 4.97E-06 5.303339743 0.281027469 AFYAELYHIISSNLEK ddPTM_HeLa_A485_30min_R1 1 AFYAELYHIISSNLEK 16 0 H0YM70;A0A087X1Z3;Q9UL46 H0YM70 PSME2 Proteasome activator complex subunit 2 0 0 171.67 4.89E-11 8336600 5332.3 6844.6 6682.3 4711.7 9565.8 5644.9 6764.7 7785.7 5620 9640.5 FALSE FALSE TRUE 6518.451739 7645.01643 9154.360844 4969.08824 8613.395364 5940.458235 5319.366582 5876.244867 6747.88245 7237.30077 0.900674429 1.056335321 1.264886058 0.686594132 1.190139202 0.820811297 0.734993163 0.81193874 0.932375573 1 12.82123601 -6.307915111 24.97294786 0.840455443 1.016872526 0.190933665 0.161833363 641.9072667 344916.118 0.055447429 0.04890016 4.92E-07 6.307915111 0.176417083 AFYAELYHIISSNLEK ddPTM_HeLa_A486_30min_R1 1 AFYAELYHIISSNLEK 16 0 H0YM70;A0A087X1Z3;Q9UL46 H0YM70 PSME2 Proteasome activator complex subunit 2 0 0 190.87 3.46E-14 9312900 17680 19073 15031 3615.7 21558 17258 21323 20653 16914 19445 FALSE FALSE TRUE 16440.7233 17561.58602 20851.40574 8417.532327 18853.99462 15128.88343 15987.75987 15950.76275 18380.11914 14575.84543 1.127943032 1.204841674 1.430545202 0.577498737 1.293509505 1.037942087 1.096866727 1.094328478 1.260998494 1 13.83129195 AFYPEEISSMVLTK ddPTM_HeLa_A486_30min_R1 1 AFYPEEISSMVLTK 14 0 A0A0G2JIW1;P0DMV9;P0DMV8;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 0 149.38 2.76E-06 0 24469 30410 24029 18427 40712 27334 31832 29517 25213 28453 FALSE FALSE TRUE 22753.84946 28000.20085 33333.67232 42898.98725 35605.52134 23961.80899 23867.29692 22796.62345 27398.48314 21328.1836 1.066844223 1.312826323 1.562893162 2.011375561 1.669411798 1.123480998 1.119049674 1.068849738 1.284613995 1 14.38047348 -6.273022254 23.55834644 1.123492593 1.542063787 0.422546567 0.236538478 380.0462748 772970.6659 0.092533154 0.082389297 5.33E-07 6.273022254 0.418571194 AGAAAGDS(ph)DEESR ddPTM_HeLa_A485_30min_R1 3 AGAAAGDSDEESR 13 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(0.926)DEES(0.074)R;AGAAAGDS(0.998)DEES(0.002)R;AGAAAGDS(1)DEESR ;; 190.1 2.51E-15 1554090000 1495500 1917080 1460380 1508720 1541140 1583870 1562980 1481130 1502290 1768530 TRUE FALSE FALSE 1828168.816 2141265.83 2000635.333 1591137.553 1387698.69 1666798.984 1229036.555 1117880.545 1803785.823 1327668.018 1.37697737 1.612802146 1.506879209 1.198445343 1.045215122 1.255433558 0.925710748 0.841988004 1.358612091 1 20.34046302 -5.383156605 2.882233248 1.066235115 1.515273664 0.617031736 0.150318048 0.172505377 2.751793684 0.044656747 0.071569473 4.14E-06 5.383156605 0.449038549 AGAAAGDS(ph)DEESR ddPTM_HeLa_A486_30min_R1 1 AGAAAGDSDEESR 13 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(1)DEESR 111.79 0.00028417 767240000 471210 532180 418100 137280 398800 409650 435860 414940 458850 496220 TRUE FALSE FALSE 438180.6123 490008.1186 579999.5171 319594.7777 348778.7853 359111.548 326803.2179 320467.2201 498623.4874 371963.2821 1.178021147 1.317356154 1.559292395 0.859210554 0.937669932 0.965448917 0.878589994 0.861556061 1.340518033 1 18.50480069 -5.271216481 24.98402975 0.965510218 1.348136529 0.542579358 0.157076493 481.7471936 1231037.224 0.043909262 0.066042159 5.36E-06 5.271216481 0.382626311 AGAAAGDS(ph)DEESRADDK ddPTM_HeLa_A485_30min_R1 2 AGAAAGDSDEESRADDK 17 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(1)DEESRADDK;AGAAAGDS(1)DEESRADDK ; 213.72 2.77E-26 1112260000 429440 351990 333350 729840 487960 408260 617450 466370 415120 1119950 TRUE FALSE FALSE 524967.4464 393152.1686 456670.0369 769709.3111 439376.9891 429635.8623 485526.7634 351992.0263 498430.7763 840767.0762 0.624391061 0.46761128 0.543158801 0.915484601 0.522590622 0.511004622 0.577480704 0.418655816 0.592828609 1 19.68134665 -8.055754814 22.99444372 1.000000001 0.571560873 0.501392764 0.127344769 7878.121464 3249094.454 0.127423892 0.032900708 8.80E-09 8.055754814 -0.428439128 AGAAAGDS(ph)DEESRADDK ddPTM_HeLa_A486_30min_R1 2 AGAAAGDSDEESRADDK 17 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(1)DEESRADDK;AGAAAGDS(1)DEESRADDK ; 190.83 2.70E-18 1542610000 819100 903050 694200 418270 934790 1059810 1189910 1109920 838830 1258540 TRUE FALSE FALSE 761685.3198 831489.0291 963012.8313 973753.6982 817539.9216 929061.4176 892181.9324 857215.4454 911540.4598 943393.3923 0.807388865 0.881381019 1.020796668 1.032182021 0.86659492 0.984808061 0.945715689 0.908651102 0.96623579 1 19.84749997 -4.538696021 4.990672949 0.961126267 0.821786797 0.529066533 0.047903905 0.129723371 8.96558766 0.012578037 0.039909777 2.89E-05 4.538696021 -0.139339469 AGAAAGDS(ph)DEESRADDKGVMDYYLK ddPTM_HeLa_A485_30min_R1 3 AGAAAGDSDEESRADDKGVMDYYLK 25 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(1)DEESRADDKGVMDYYLK;AGAAAGDS(1)DEESRADDKGVMDYYLK;AGAAAGDS(1)DEESRADDKGVMDYYLK ;; 256.43 8.28E-62 4400870000 1472420 1209010 849980 2120930 2042540 1943450 2996610 3107070 1499860 3189350 TRUE FALSE FALSE 1799954.749 1350393.203 1164422.973 2236791.035 1839177.546 2045206.037 2356359.793 2345056.211 1800868.144 2394303.741 0.751765417 0.564002461 0.486330516 0.934213566 0.76814713 0.854196568 0.984152409 0.979431377 0.752146903 1 21.19117475 -5.269674771 24.87962786 0.891782981 0.597029762 0.639400088 0.101592667 351.0441507 1060525.869 0.028883786 0.043683304 5.37E-06 5.269674771 -0.29475322 AGAAAGDS(ph)DEESRADDKGVMDYYLK ddPTM_HeLa_A486_30min_R1 3 AGAAAGDSDEESRADDKGVMDYYLK 25 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(0.975)DEES(0.025)RADDKGVMDYYLK;AGAAAGDS(1)DEESRADDKGVMDYYLK;AGAAAGDS(0.975)DEES(0.025)RADDKGVMDYYLK ;; 116.94 9.84E-07 3217660000 407602 407580 212167 224829 427120 475646 636780 596660 332396 605730 TRUE FALSE FALSE 379031.2047 375281.8764 294323.7444 523413.2742 373546.6269 416965.6325 477450.9088 460813.543 361208.3529 454051.2654 0.834776233 0.826518733 0.64821699 1.152762505 0.822697029 0.918322807 1.051535246 1.014893203 0.795523282 1 18.79249567 -5.248965334 24.99997176 0.961443777 0.775505473 0.399603957 0.109553737 814.9352253 1633256.995 0.029185451 0.050118972 5.64E-06 5.248965334 -0.185938304 AGAAAGDSDEES(ph)RADDKGVMDYYLK ddPTM_HeLa_A485_30min_R1 1 AGAAAGDSDEESRADDKGVMDYYLK 25 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(0.03)DEES(0.969)RADDKGVMDYYLK 92.822 0.0019989 257900000 29042 31286 24869 51388 51940 40802 58295 71222 29390 67378 TRUE FALSE FALSE 35502.29271 34944.62555 34069.07799 54195.19632 46768.67123 42938.32963 45839.79702 53754.69283 35288.30342 50581.9046 0.701877341 0.690852308 0.673542807 1.071434473 0.924612697 0.848887166 0.906248932 1.062725756 0.697646791 1 15.62633374 -5.240346014 24.53976677 0.92821425 0.688966916 0.540384051 0.102037401 483.4566027 562446.4568 0.026608837 0.046025092 5.75E-06 5.240346014 -0.239247334 AGAAS(ph)MIHYMVLISAR ddPTM_HeLa_A485_30min_R1 2 AGAASMIHYMVLISAR 16 0 C9IYN1;Q9NV64 C9IYN1 TMEM39A Transmembrane protein 39A 1 0 AGAAS(0.997)MIHY(0.003)MVLISAR;AGAAS(0.996)MIHY(0.004)MVLISAR ; 51.643 0.01571 1630580000 1537830 1165700 738080 1962550 1109240 1974670 1986580 2597870 1281880 2410280 TRUE FALSE FALSE 1879914.978 1302018.475 1011126.506 2069759.137 998800.1708 2078060.668 1562130.954 1960738.309 1539141.558 1809441.554 1.03894761 0.719569235 0.558805839 1.143866257 0.551993607 1.148454153 0.86332214 1.083615166 0.850616896 1 20.78711308 -6.280027365 24.98589579 0.986560127 0.803432687 0.189943842 0.192597375 1434.554614 1928316.459 0.064534736 0.05701426 5.25E-07 6.280027365 -0.18312744 AGAAS(ph)MIHYMVLISAR ddPTM_HeLa_A486_30min_R1 2 AGAASMIHYMVLISAR 16 0 C9IYN1;Q9NV64 C9IYN1 TMEM39A Transmembrane protein 39A 1 0 AGAAS(0.991)MIHY(0.009)MVLISAR;AGAAS(0.996)MIHY(0.004)MVLISAR ; 50.155 0.016871 1218360000 1528980 1401900 743900 340940 1321280 1955080 1897130 1946780 915780 2364900 TRUE FALSE FALSE 1421806.398 1290808.338 1031958.002 793725.5502 1155552.742 1713882.107 1422448.008 1503540.692 995160.5478 1772713.647 0.802050799 0.72815389 0.58213463 0.44774606 0.651855275 0.966812723 0.802412736 0.848157679 0.561376932 1 20.75752808 -6.116099825 8.416535553 0.823780401 0.630892095 0.320508074 0.140043225 0.402206355 26.76720252 0.047575581 0.047622458 7.65E-07 6.116099825 -0.192888306 AGAAS(ph)PLNS(ph)PLSSAVPSLGK ddPTM_HeLa_A485_30min_R1 4 AGAASPLNSPLSSAVPSLGK 20 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 AGAAS(1)PLNS(1)PLSSAVPSLGK;AGAAS(1)PLNS(0.971)PLS(0.025)S(0.004)AVPSLGK;AGAAS(1)PLNS(0.985)PLS(0.014)SAVPSLGK;AGAAS(1)PLNS(0.946)PLS(0.053)S(0.001)AVPSLGK ;;; 317.85 1.27E-101 440538000 1022529 769271 629092 1020309 996621 659528 784666 584151 624203 1041150 TRUE FALSE FALSE 1249987.048 859230.5517 861819.3095 1076045.897 897393.9139 694059.8663 617015.699 440887.0513 749474.8166 781610.4659 1.599245536 1.099307889 1.102619971 1.376703542 1.148134465 0.887986915 0.789415861 0.564075163 0.958885339 1 19.57609026 -6.244979681 2.523674936 0.795300337 1.267815749 0.604553718 0.17384402 0.197949403 2.492792324 0.064908981 0.060734809 5.69E-07 6.244979681 0.472515411 AGAAS(ph)PLNS(ph)PLSSAVPSLGK ddPTM_HeLa_A486_30min_R1 2 AGAASPLNSPLSSAVPSLGK 20 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 AGAAS(1)PLNS(1)PLSSAVPSLGK;AGAAS(1)PLNS(0.996)PLS(0.004)SAVPSLGK ; 214.66 3.30E-27 408080000 570730 676620 416320 231040 603530 668350 757910 691690 516570 610830 TRUE FALSE FALSE 530724.7743 623002.167 577530.2534 537872.7961 527829.6397 585895.7723 568272.9016 534207.2865 561346.7035 457874.1922 1.159106111 1.360640494 1.26132956 1.174717434 1.15278312 1.279599904 1.241111448 1.166711939 1.225984589 1 18.80459172 -13.54890453 0.237000129 1.44E-15 1.251083081 0.548555755 0.06153221 102.5097258 1.247936769 49.14846282 0.103311092 2.83E-14 13.54890453 1.251083081 AGAAS(ph)PLNSPLSSAVPSLGKEPFPPS(ph)SPLQK ddPTM_HeLa_A485_30min_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 AGAAS(0.909)PLNS(0.041)PLS(0.025)S(0.025)AVPS(0.016)LGKEPFPPS(0.51)S(0.474)PLQK 56.347 0.022292 231940000 72998 72731 49221 116620 105060 98504 139130 132170 73817 147360 TRUE FALSE FALSE 89236.15326 81236.25777 67429.89616 122990.6553 94599.85751 103661.5171 109403.7389 99755.10027 88631.39481 110625.864 0.806648193 0.734333318 0.609531024 1.111771252 0.855133276 0.937045944 0.988952628 0.901733977 0.801181493 1 16.7553292 -5.250460665 24.94742591 0.936263401 0.718587097 0.560237216 0.091410937 537.3110714 1220953.727 0.024521798 0.041957772 5.62E-06 5.250460665 -0.217676304 AGAAS(ph)PLNSPLSSAVPSLGKEPFPPS(ph)SPLQK ddPTM_HeLa_A486_30min_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 AGAAS(0.929)PLNS(0.024)PLS(0.022)S(0.024)AVPS(0.002)LGKEPFPPS(0.518)S(0.48)PLQK 68.811 0.0021606 213090000 82364 72293 39113 51814 77705 83781 109690 104810 57682 123410 TRUE FALSE FALSE 76590.70893 66564.23939 54258.60108 120625.6105 67958.51433 73444.95204 82244.40182 80947.05099 62681.9222 92507.33274 0.827942031 0.719556358 0.586532975 1.303957286 0.734628405 0.793936544 0.88905819 0.875033888 0.677588688 1 16.49728011 AGAASPLNS(ph)PLSSAVPSLGKEPFPPSSPLQK ddPTM_HeLa_A486_30min_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 AGAAS(0.095)PLNS(0.242)PLS(0.242)S(0.242)AVPS(0.131)LGKEPFPPS(0.023)S(0.023)PLQK 131.53 1.00E-06 51667000 84293 77762 44931 35773 80610 86907 109550 107470 57042 108990 TRUE FALSE FALSE 78384.49599 71599.85592 62329.48649 83281.35187 70499.14214 76185.29795 82139.4313 83001.42705 61986.44649 81698.19459 0.959439757 0.876394592 0.762923671 1.019378118 0.862921665 0.932521194 1.005400813 1.01595179 0.758724802 1 16.31801658 -5.274476654 24.9934589 0.94172877 0.867266854 0.133800763 0.088453719 1580.195537 3029351.535 0.024595397 0.036717762 5.32E-06 5.274476654 -0.074461915 AGAASPLNSPLSSAVPSLGKEPFPPS(ph)SPLQK ddPTM_HeLa_A486_30min_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 AGAASPLNSPLSSAVPSLGKEPFPPS(0.558)S(0.441)PLQK 88.226 0.00015751 269430000 96865 87866 53349 48125 103000 102710 132840 115230 80468 126670 TRUE FALSE FALSE 90075.26371 80903.17816 74007.16154 112037.4321 90080.77956 90038.68448 99602.02696 88994.64445 87443.03103 94951.00752 0.948649899 0.852051814 0.77942471 1.179949903 0.948707991 0.948264656 1.048983361 0.93726909 0.92092789 1 16.53489569 -5.223372354 24.99953631 0.993147391 0.859243127 0.379667234 0.080500606 611.1964462 401386.7729 0.021764562 0.037696363 5.98E-06 5.223372354 -0.133904264 AGAASPLNSPLSSAVPSLGKEPFPPSS(ph)PLQK ddPTM_HeLa_A485_30min_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 AGAASPLNSPLSSAVPSLGKEPFPPS(0.169)S(0.831)PLQK 150.8 5.44E-10 222690000 58156 56902 35591 59882 73106 78591 99286 110240 48671 97476 TRUE FALSE FALSE 71092.60156 63556.19392 48757.59197 63153.20203 65827.30995 82705.90324 78072.73501 83203.46715 58438.82326 73177.02711 0.971515302 0.868526591 0.666296431 0.863019509 0.899562507 1.13021677 1.066902252 1.137016225 0.798595209 1 16.15910319 -6.051418274 4.356142552 1.037409755 0.835372913 0.374095186 0.112796224 0.223026091 8.913877026 0.038163973 0.039478772 8.88E-07 6.051418274 -0.202036842 AGAASPLNSPLSSAVPSLGKEPFPPSS(ph)PLQK ddPTM_HeLa_A486_30min_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 AGAASPLNSPLSSAVPSLGKEPFPPS(0.175)S(0.825)PLQK 240.83 1.04E-50 210120000 71553 59568 34153 29364 69050 65385 86300 83146 45318 85478 TRUE FALSE FALSE 66537.5042 54847.61474 47377.95625 68360.87597 60389.10513 57318.46349 64706.82721 64215.47086 49246.20073 64073.75243 1.03845181 0.856007533 0.739428463 1.0669092 0.942493655 0.894570106 1.009880407 1.002211802 0.768586182 1 15.96744586 -5.272274827 24.9985812 0.954296243 0.875767086 0.106942589 0.101880196 1626.223621 3751874.307 0.028548812 0.042833066 5.34E-06 5.272274827 -0.078529157 AGADGGT(ph)PTDRYNSYNRPRPK ddPTM_HeLa_A485_30min_R1 1 AGADGGTPTDRYNSYNRPRPK 21 3 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AGADGGT(0.452)PT(0.452)DRYNS(0.096)YNRPRPK 60.464 0.024368 151340000 39499 54387 40840 37590 70922 64024 67891 81151 43705 57205 TRUE FALSE FALSE 48285.41628 60747.08655 55948.41549 39643.44652 63860.75666 67376.19764 53385.53323 61248.59001 52476.19261 42944.84628 1.12435881 1.414537292 1.302796967 0.923124658 1.487041221 1.568900659 1.243118508 1.426215141 1.221943892 1 15.39019739 -8.018077622 21.0592765 0.999999982 1.314311256 0.221702248 0.176501846 226.4677801 263823.0855 0.173730257 0.044856959 9.59E-09 8.018077622 0.314311274 AGADGGT(ph)PTDRYNSYNRPRPK ddPTM_HeLa_A486_30min_R1 1 AGADGGTPTDRYNSYNRPRPK 21 3 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AGADGGT(0.347)PT(0.347)DRYNS(0.305)YNRPRPK 67.979 0.0083455 97862000 72368 64290 46460 27421 77989 65427 77160 81281 45302 89895 TRUE FALSE FALSE 67295.37691 59195.42626 64450.55624 63837.47378 68206.8924 57355.28195 57853.75188 62775.09065 49228.81384 67384.70688 0.998674329 0.878469745 0.956456728 0.947358484 1.012201367 0.851161704 0.858559079 0.931592546 0.730563597 1 16.04013359 -6.280217719 24.43783505 0.869111394 0.953431499 0.252134639 0.07199366 870.2460473 1132520.425 0.023961073 0.021169467 5.25E-07 6.280217719 0.084320105 AGAEDDEEKGEGT(ph)PR ddPTM_HeLa_A485_30min_R1 1 AGAEDDEEKGEGTPR 15 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 AGAEDDEEKGEGT(1)PR 109.65 0.00028939 665020000 632530 463000 300850 1057000 517360 517060 723940 502560 461150 1243800 TRUE FALSE FALSE 773234.1163 517143.8224 412146.9344 1114741.234 465849.8218 544132.4621 569264.305 379306.372 553698.5751 933743.5504 0.828101159 0.553839244 0.441392001 1.193840892 0.498905531 0.58274294 0.609658085 0.406221143 0.592987844 1 19.83266685 -10.10069412 4.967747952 1.000012619 0.629696069 0.203790421 0.216757344 3.02E-05 5.47E-06 0.20943985 0.050794895 7.93E-11 10.10069412 -0.37031655 AGAEDDEEKGEGT(ph)PR ddPTM_HeLa_A486_30min_R1 2 AGAEDDEEKGEGTPR 15 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 AGAEDDEEKGEGT(1)PR;AGAEDDEEKGEGT(1)PR ; 146.78 8.66E-08 1573450000 2384120 2429360 951040 1159350 1490880 2637100 2815800 2444740 1835590 4320800 TRUE FALSE FALSE 2217005.5 2236848.666 1319308.158 2699025.39 1303879.928 2311761.414 2111257.058 1888126.07 1994700.419 3238843.556 0.684505275 0.690631896 0.407339266 0.833329966 0.402575767 0.71376137 0.651855213 0.582963035 0.615868098 1 21.62704735 -10.31688761 2.91980623 1.003861026 0.618557236 0.450256578 0.125848724 11334820.47 14016354.3 379483.2175 0.029630012 4.82E-11 10.31688761 -0.38530379 AGAGADGGAVDR ddPTM_HeLa_A485_30min_R1 1 AGAGADGGAVDR 12 0 A0A1B0GW30 A0A1B0GW30 0 0 90.629 0.027035 5993800 2896.1 4564.1 2775.4 3173.7 2841.9 3192.7 3517.9 5534.6 3094.3 4320.1 FALSE FALSE TRUE 3540.327454 5097.831793 3802.135954 3347.071195 2558.950457 3359.864835 2766.271926 4177.230672 3715.297627 3243.178576 1.091622731 1.571862811 1.172348628 1.032034196 0.789025457 1.035978981 0.852950851 1.288005139 1.145572944 1 11.66319275 -5.018342882 4.955390726 1.020633217 1.342743147 0.351773093 0.169228836 0.18584198 12.81192625 0.046447638 0.090068335 9.59E-06 5.018342882 0.32210993 AGAGMITQHSSNAS(ph)PINR ddPTM_HeLa_A485_30min_R1 3 AGAGMITQHSSNASPINR 18 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YKH2 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 AGAGMITQHSSNAS(1)PINR;AGAGMITQHSS(0.008)NAS(0.992)PINR;AGAGMITQHSSNAS(1)PINR ;; 241.76 1.64E-45 2530230000 783470 2140430 2550270 553930 2573800 1421360 1613340 1897460 1757370 940160 TRUE FALSE FALSE 957750.1986 2390734.669 3493720.999 584189.7933 2317543.435 1495780.212 1268636.729 1432104.96 2110058.039 705795.4144 1.356979911 3.387291304 4.950047744 0.82770415 3.28359095 2.119282984 1.797456747 2.029065266 2.989617099 1 19.42889053 -5.275197516 24.97702902 2.098731249 3.247025024 0.210227509 1.077430572 1245.157291 2260501.775 0.299035901 0.446122585 5.31E-06 5.275197516 1.148293775 AGAGMITQHSSNAS(ph)PINR ddPTM_HeLa_A486_30min_R1 3 AGAGMITQHSSNASPINR 18 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YKH2 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 AGAGMITQHSS(0.003)NAS(0.997)PINR;AGAGMITQHS(0.028)S(0.363)NAS(0.608)PINR;AGAGMITQHS(0.008)S(0.108)NAS(0.885)PINR ;; 173.36 1.23E-12 918800000 569856 528233 638497 64238 767832 271293 335915 355838 498667 147135 TRUE FALSE FALSE 529912.0371 486373.8933 885740.1379 149549.3104 671523.3508 237823.628 251865.5141 274821.4553 541891.8571 110291.4383 4.804652521 4.409897094 8.030905676 1.355946687 6.088626289 2.156319943 2.283636136 2.49177506 4.913272194 1 16.75096128 -5.83352151 1.103940695 2.70080352 5.343072803 0.259472788 1.850925419 0.707244012 1.838114907 0.797768163 1.105683965 1.47E-06 5.83352151 2.642269282 AGAGPGGPPQKPAPSS(ph)QR ddPTM_HeLa_A486_30min_R1 1 AGAGPGGPPQKPAPSSQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 1 0 AGAGPGGPPQKPAPS(0.203)S(0.797)QR 70.452 0.00080604 0 97876 145870 100630 46565 134400 117720 122650 119630 115690 124860 TRUE FALSE FALSE 91015.39783 134310.73 139596.631 108405.6733 117542.2988 103196.9033 91961.67274 92392.8605 125718.1023 93594.2433 0.972446538 1.435031955 1.49150873 1.158251506 1.25587103 1.102598831 0.982556934 0.987163924 1.343224732 1 16.51413218 -6.10824026 1.88304163 1.073178971 1.296136197 0.219948993 0.165722906 0.493400672 3.473915008 0.064936725 0.066185376 7.79E-07 6.10824026 0.222957226 AGAHLQGGAK(ac)R ddPTM_HeLa_A486_30min_R1 2 AGAHLQGGAKR 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; AGAHLQGGAK(1)R;AGAHLQGGAK(1)R 117.02 0.0071187 37282000 21847.9 30783 36897 9626.1 38153 31239 34484 31765 29682 33557 FALSE TRUE FALSE 20316.47503 28343.64297 51184.50654 22410.04728 33367.49498 27385.04979 25855.73847 24532.80293 32254.85966 25154.10878 0.807680177 1.12679973 2.034836813 0.890910009 1.326522648 1.088690919 1.027893244 0.975300025 1.282289901 1 14.61850645 -6.343764116 6.326511024 1.068548795 1.255988103 0.059083162 0.319921092 0.742889343 46.83485494 0.115546825 0.101740514 4.53E-07 6.343764116 0.187439308 AGAHLQGGAKR ddPTM_HeLa_A485_30min_R1 2 AGAHLQGGAKR 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 157.96 3.94E-06 41914000 65584 75706 55592 55895 50125 144267 75403 131534 77125 80014 FALSE FALSE TRUE 80172.93454 84559.15815 76157.79418 58948.40232 45134.379 151820.597 59292.53306 99275.08026 92603.28007 60067.98235 1.334703305 1.407724296 1.267860035 0.981361451 0.751388298 2.527479551 0.987090472 1.652712084 1.541641261 1 15.87430858 AGAISASGPELQGAGHSK ddPTM_HeLa_A485_30min_R1 1 AGAISASGPELQGAGHSK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 148.97 5.82E-10 7964300 11704 11489 13380 12107 18636 12956 17325 18108 13023 21274 FALSE FALSE TRUE 14307.51442 12832.53861 18329.81879 12768.37475 16780.53441 13634.35613 13623.37222 13666.98461 15636.59665 15970.78332 0.895855522 0.80350089 1.147709441 0.799483313 1.050702027 0.853706162 0.853018412 0.855749172 0.979075123 1 13.96314745 AGAPGALS(ph)PSYDGGLHGLQSK ddPTM_HeLa_A485_30min_R1 4 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;P15923-2;X6REB3;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 AGAPGALS(1)PSYDGGLHGLQSK;AGAPGALS(0.756)PS(0.244)YDGGLHGLQSK;AGAPGALS(0.997)PS(0.003)YDGGLHGLQSK;AGAPGALS(0.855)PS(0.145)YDGGLHGLQSK ;;; 332.17 2.10E-114 5103370000 2489750 2777410 2431790 2295620 3429330 2780470 3581380 3703940 2458060 3201220 TRUE FALSE FALSE 3043586.298 3102203.939 3331410.316 2421023.908 3087893.864 2926051.11 2816188.906 2795542.907 2951370.095 2403214.768 1.266464545 1.29085589 1.386230794 1.007410549 1.284901335 1.217557061 1.171842377 1.163251385 1.228092526 1 21.19653415 -14 0.087334045 0.297491169 1.410795268 0.392502465 0.090515729 234.8831433 1.430106518 31.19492423 2.355460221 1.00E-14 14 1.113304099 AGAPGALS(ph)PSYDGGLHGLQSK ddPTM_HeLa_A486_30min_R1 2 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;P15923-2;X6REB3;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 AGAPGALS(0.994)PS(0.006)YDGGLHGLQSK;AGAPGALS(0.984)PS(0.016)YDGGLHGLQSK ; 375.76 1.61E-142 3083600000 2524300 2631900 1903240 521160 3012800 2535900 2883900 2805400 2109290 2404100 TRUE FALSE FALSE 2347359.605 2423338.659 2640225.499 1213286.818 2634906.531 2223046.441 2162317.717 2166671.661 2292124.956 1802097.712 1.30257066 1.34473211 1.465084541 0.673263614 1.462132998 1.233588182 1.199889275 1.202305317 1.271920463 1 20.78124581 -14 0.177645994 0.087460063 1.284851137 0.106034733 0.209676973 334.19834 3.201975884 108.4837141 0.674283771 1.00E-14 14 1.197391075 AGAPVGGS(ph)PGLAK ddPTM_HeLa_A485_30min_R1 3 AGAPVGGSPGLAK 13 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK ;; 200.16 1.94E-21 1521680000 1754590 1597550 1442130 2139620 2182180 1880590 2438140 2321570 1721780 2801660 TRUE FALSE FALSE 2144892.492 1784369.576 1975633.899 2256502.023 1964914.497 1979054.784 1917211.471 1752201.317 2067325.453 2103257.723 1.019795372 0.848383703 0.939320882 1.072860448 0.934224311 0.940947352 0.911543769 0.833089211 0.982915898 1 21.00419421 -6.285930929 2.922156442 0.920018564 0.962169117 0.033417805 0.069127806 0.827967487 14.23815815 0.026249877 0.023973953 5.18E-07 6.285930929 0.042150553 AGAPVGGS(ph)PGLAK ddPTM_HeLa_A486_30min_R1 2 AGAPVGGSPGLAK 13 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK ; 193.06 1.08E-17 1281630000 1836980 2041630 1223140 774950 1909520 2010340 2345600 2269240 1543790 2326790 TRUE FALSE FALSE 1708217.188 1879843.803 1696772.565 1804122.764 1670010.196 1762324.69 1758706.071 1752583.589 1677606.96 1744146.639 0.979399983 1.077801465 0.97283825 1.034387088 0.957494146 1.010422318 1.008347596 1.004837294 0.961849722 1 20.73408991 -4.799927517 24.99994699 0.995214927 1.028601386 0.162294961 0.031514961 240.6783275 156332.1249 0.007631897 0.015887749 1.59E-05 4.799927517 0.033386459 AGASIPSSGAAS(ph)PR ddPTM_HeLa_A485_30min_R1 3 AGASIPSSGAASPR 14 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 AGASIPSSGAAS(1)PR;AGASIPS(0.029)S(0.029)GAAS(0.942)PR;AGASIPSSGAAS(1)PR ;; 191.63 8.31E-18 1238210000 731160 872620 808550 957500 1125790 879090 1195130 1252540 769030 1255940 TRUE FALSE FALSE 893804.0195 974665.3182 1107666.292 1009805.8 1013702.395 925117.7931 939780.7122 945352.6011 923367.267 942857.2719 0.94797383 1.033735802 1.174797421 1.071006005 1.075138756 0.981185404 0.996736983 1.002646561 0.979328786 1 19.84667987 -6.260448552 24.91898461 0.992442295 1.065971928 0.297466227 0.052338755 116.8727789 2939317.273 0.018978617 0.017911386 5.49E-07 6.260448552 0.073529633 AGASIPSSGAAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AGASIPSSGAASPR 14 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 AGASIPSSGAAS(1)PR;AGASIPSSGAAS(1)PR ; 142.03 1.06E-07 1077380000 489910 528530 437460 245885 591150 476220 601710 577800 419950 652630 TRUE FALSE FALSE 455569.8389 486647.3579 606856.2276 572432.7063 517002.4547 417468.8183 451155.7938 446247.5533 456351.6041 489207.2001 0.931241075 0.994767366 1.240489158 1.170123224 1.056816937 0.853357878 0.922218221 0.912185171 0.9328391 1 18.90008611 -6.129839625 5.543060392 0.919233073 1.091543421 0.444365955 0.086453432 0.224199281 9.187903573 0.031190657 0.031298423 7.42E-07 6.129839625 0.172310348 AGAVTST(ph)PNR ddPTM_HeLa_A485_30min_R1 2 AGAVTSTPNR 10 0 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 AGAVT(0.016)S(0.036)T(0.948)PNR;AGAVT(0.097)S(0.069)T(0.834)PNR ; 100.88 0.0075774 596190000 698330 815730 882030 724450 1046220 718040 885560 736610 746740 951100 TRUE FALSE FALSE 853671.0993 911122.5276 1208329.601 764024.8691 942054.6633 755635.4641 696352.8716 555955.2425 896603.8685 714008.2737 1.195603932 1.276067185 1.692318767 1.070050442 1.319389002 1.058300712 0.975272833 0.778639776 1.255733164 1 19.44558127 -6.20562291 1.543304381 0.981127225 1.342984485 0.391808619 0.183926115 0.385071636 1.832005612 0.078937414 0.074771219 6.23E-07 6.20562291 0.36185726 AGAVTST(ph)PNR ddPTM_HeLa_A486_30min_R1 2 AGAVTSTPNR 10 0 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 AGAVT(0.075)S(0.024)T(0.901)PNR;AGAVT(0.201)S(0.131)T(0.668)PNR ; 113.69 0.0027703 732760000 962650 1403660 1269010 464400 1486200 1235260 1384150 1353040 1097910 1087190 TRUE FALSE FALSE 895173.2061 1292428.87 1760404.657 1081146.669 1299786.938 1082866.18 1037821.03 1044982.329 1193077.723 814950.5476 1.098438683 1.585898523 2.160136787 1.326640828 1.594927375 1.328750786 1.273477309 1.282264711 1.463987878 1 19.63635299 -6.282732553 1.817797094 1.272384769 1.59008165 0.206463384 0.273756459 0.59799437 3.895125419 0.117312243 0.105608206 5.22E-07 6.282732553 0.317696881 AGCFS(ph)PK ddPTM_HeLa_A485_30min_R1 1 AGCFSPK 7 0 Q6P4F7-3;Q6P4F7;H3BQ41;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 AGCFS(1)PK 81.525 0.0094171 0 332450 292290 214570 523340 394890 315560 458270 477470 271920 766710 TRUE FALSE FALSE 406402.3556 326470.7729 293948.372 551928.739 355573.3651 332082.2337 360356.8708 360369.7339 326491.8498 575583.3073 0.706070434 0.567199863 0.510696485 0.958903311 0.617761774 0.576949035 0.626072484 0.626094832 0.567236481 1 19.13466523 -10.15323481 4.796289272 1.000031272 0.639842114 0.458097342 0.117573372 3.97E-05 7.01E-06 0.114907169 0.027866666 7.03E-11 10.15323481 -0.360189158 AGCFS(ph)PK ddPTM_HeLa_A486_30min_R1 2 AGCFSPK 7 0 Q6P4F7-3;Q6P4F7;H3BQ41;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 AGCFS(1)PK;AGCFS(1)PK ; 82.645 0.00891 0 501140 530730 284190 321980 504660 563170 754440 650970 419540 914550 TRUE FALSE FALSE 466012.6739 488673.0219 394235.9789 749585.712 441360.837 493691.8113 565671.1323 502758.3416 455906.065 685540.7273 0.679773871 0.712828578 0.575073024 1.093422582 0.643814174 0.720149499 0.825145917 0.73337487 0.665031335 1 19.38688285 -11.49224143 2.061015722 3.661774549 0.74263677 0.254920993 0.133849291 15005674.07 943341.4864 186715232.1 0.034143234 3.22E-12 11.49224143 -2.919137779 AGDLLEDS(ph)PK ddPTM_HeLa_A485_30min_R1 14 AGDLLEDSPK 10 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK ;;;;;;;;;;;;; 194.96 1.91E-10 53670354000 14207360 10303899 7544150 29414670 13393340 10271941 19024530 13226144 9246018 35181920 TRUE FALSE FALSE 17367738.22 11508850.36 10335045.02 31021518.94 12059852.04 10809763.95 14959783.75 9982411.446 11101609 26411714.82 0.657577077 0.435747941 0.391305339 1.174536343 0.45660996 0.409279141 0.566407136 0.377953931 0.420328974 1 24.65467464 -10.38420395 4.395495793 1.000896424 0.543561098 0.267254708 0.226861383 0.002039218 0.000285689 0.224691332 0.054393363 4.13E-11 10.38420395 -0.457335326 AGDLLEDS(ph)PK ddPTM_HeLa_A486_30min_R1 13 AGDLLEDSPK 10 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK ;;;;;;;;;;;; 184.87 1.17E-09 1.19E+11 25884320 27311240 10411526 22569900 17852960 29693940 39273230 33132420 19720880 57219700 TRUE FALSE FALSE 24069962.83 25146997.88 14443147.7 52543867.82 15613675.28 26030603.59 29446652.46 25588891.24 21430301.76 42891514.68 0.561182393 0.586293071 0.336736714 1.225041088 0.364027137 0.606894016 0.686537948 0.596595654 0.499639659 1 25.35418893 -10.4554799 2.924084506 1.009925389 0.611499077 0.20611029 0.231241068 45404158.41 52718362.92 3693571.068 0.057508739 3.50E-11 10.4554799 -0.398426312 AGDLLEDS(ph)PKR ddPTM_HeLa_A486_30min_R1 1 AGDLLEDSPKR 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 AGDLLEDS(1)PKR 92.457 0.0014398 93985000 129340 138770 64699 68770 111880 147720 169090 142900 122580 233870 TRUE FALSE FALSE 120273.9339 127773.3598 89752.1855 160100.0354 97846.96716 129495.8083 126781.8935 110364.7895 133205.3331 175307.4298 0.686074367 0.728853078 0.511970232 0.913252996 0.55814501 0.738678381 0.723197492 0.629549983 0.759838492 1 17.41952762 -8.082259806 6.388051567 0.999995572 0.68833741 0.452434128 0.103684281 0.825226317 63.43705211 0.092149483 0.023890979 8.27E-09 8.082259806 -0.311658162 AGDLLEDS(ph)PKRPK ddPTM_HeLa_A485_30min_R1 11 AGDLLEDSPKRPK 13 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK ;;;;;;;;;; 195.38 1.94E-18 2.38E+11 18170879 14409450 8628142 33289570 25453580 23108080 44077400 46248160 15413068 47107410 TRUE FALSE FALSE 22212928.34 16094509.83 11820050.77 35108094.92 22919332.2 24317983.34 34659903.41 34905726.25 18506329.37 35364399.63 0.628115522 0.455104851 0.334235867 0.992752465 0.648090522 0.687640214 0.980078943 0.987030081 0.523303932 1 25.07579443 -5.258185035 24.99962663 0.823313677 0.470747353 0.478550295 0.171483858 252.0388312 1936133.89 0.046990016 0.077256593 5.52E-06 5.258185035 -0.352566324 AGDLLEDS(ph)PKRPK ddPTM_HeLa_A486_30min_R1 15 AGDLLEDSPKRPK 13 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK;AGDLLEDS(1)PKRPK ;;;;;;;;;;;;;; 198.95 9.37E-22 3.24E+11 18303250 15969910 6846006 16072613 18304450 23324360 36382330 33279560 12513977 35736800 TRUE FALSE FALSE 17020286.69 14704396.17 9496962.866 37417855.33 16008535.2 20446837.61 27279086.22 25702530.68 13598698.6 26788072.67 0.635368095 0.548915794 0.354522066 1.396810281 0.597599364 0.7632814 1.018329559 0.959476667 0.507640052 1 24.67508745 -5.177842721 24.99999996 0.877893638 0.516533045 0.34071549 0.240992367 105.5824752 31573.36789 0.063491505 0.109970524 6.64E-06 5.177842721 -0.361360593 AGDLLEDSPKRPK ddPTM_HeLa_A485_30min_R1 1 AGDLLEDSPKRPK 13 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 144.47 7.96E-08 373730000 143610 116230 86144 280410 240780 208630 371880 408610 149810 432500 FALSE FALSE TRUE 175555.5491 129822.0874 118012.2504 295728.0883 216807.0978 219553.5442 292424.8 308397.7568 179875.4929 324685.7096 0.540693797 0.39983924 0.363466105 0.910813379 0.667744503 0.676203287 0.900639577 0.94983471 0.553998798 1 18.30868436 -5.257236562 24.99941244 0.798838538 0.43118365 0.599086686 0.139964206 247.5032328 1472205.644 0.037858501 0.062706199 5.53E-06 5.257236562 -0.367654888 AGDRNS(ph)EDDGVVMTFSSVK ddPTM_HeLa_A485_30min_R1 7 AGDRNSEDDGVVMTFSSVK 19 1 Q9NY61 Q9NY61 AATF Protein AATF 1 0 AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK ;;;;;; 241.7 5.70E-46 2772955000 2562107 2493837 1535166 2698300 1976109 2353698 2839730 2696329 1728251 3361026 TRUE FALSE FALSE 3132038.863 2785469.544 2103087.787 2845701.297 1779360.649 2476933.988 2232998.487 2035050.085 2075095.123 2523184.073 1.241304151 1.103950193 0.833505494 1.12782152 0.705204455 0.981669952 0.884992304 0.806540477 0.822411312 1 21.26681403 -3.439046767 0.716183905 0.873037492 2.214448797 0.482385542 0.11561926 6.576943321 1.085526128 0.04331898 9.346013821 0.000363876 3.439046767 1.341411305 AGDRNS(ph)EDDGVVMTFSSVK ddPTM_HeLa_A486_30min_R1 5 AGDRNSEDDGVVMTFSSVK 19 1 Q9NY61 Q9NY61 AATF Protein AATF 1 0 AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(0.623)EDDGVVMT(0.302)FS(0.062)S(0.013)VK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK ;;;; 231.52 6.88E-35 3313470000 3739330 3562271 1623068 1089239 2213095 3216516 3302490 2963622 2896965 4742590 TRUE FALSE FALSE 3477222.277 3279983.672 2251563.397 2535803.439 1935507.989 2819694.959 2476172.072 2288869.966 3148076.259 3555014.595 0.978117581 0.922635782 0.633348566 0.713303243 0.544444456 0.793159883 0.696529369 0.643842635 0.885531177 1 21.76142405 -10.12560828 16.86772593 0.999999993 0.746470647 0.231130435 0.131890135 0 0 0.133064627 0.032272912 7.49E-11 10.12560828 -0.253529346 AGDTS(ph)DQEGHSLEEK ddPTM_HeLa_A485_30min_R1 1 AGDTSDQEGHSLEEK 15 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 AGDT(0.023)S(0.977)DQEGHSLEEK 297.73 6.76E-84 0 162740 144420 109480 217600 157610 152280 233010 237870 112710 280020 TRUE FALSE FALSE 198940.9516 161308.6627 149981.2078 229486.937 141917.795 160253.1453 183225.51 179532.0095 135329.8632 210216.1674 0.946363708 0.767346607 0.713461813 1.091671206 0.675104093 0.762325502 0.871605226 0.854035214 0.643765248 1 17.6815141 -4.24681577 23.15820368 0.815817121 0.946363967 0.073415359 0.134045181 2542.69544 4026465.146 0.031890944 0.621614762 5.66E-05 4.24681577 0.130546847 AGEPDGES(ph)LDEQPSSSSSK ddPTM_HeLa_A485_30min_R1 2 AGEPDGESLDEQPSSSSSK 19 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGEPDGES(1)LDEQPSSSSSK;AGEPDGES(1)LDEQPSSSSSK ; 337.45 3.83E-102 943400000 1397900 798250 779390 1992720 1452390 982880 1518100 1154730 1094520 2857230 TRUE FALSE FALSE 1708858.032 891598.3936 1067718.794 2101577.248 1307784.952 1034342.077 1193745.533 871530.657 1314180.124 2144975.144 0.796679643 0.415668403 0.497776768 0.979767646 0.609697019 0.482216346 0.556531173 0.406312707 0.612678486 1 21.0325295 -10.71803969 2.999610091 1.058648738 0.588822195 0.343522252 0.167641487 161563236.8 159836440.1 71524212.14 0.042270472 1.91E-11 10.71803969 -0.469826543 AGEPDGES(ph)LDEQPSSSSSK ddPTM_HeLa_A486_30min_R1 2 AGEPDGESLDEQPSSSSSK 19 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGEPDGES(1)LDEQPSSSSSK;AGEPDGES(1)LDEQPSSSSSK ; 350.88 1.24E-115 1543480000 1446110 1986370 1028980 775330 1733150 2304210 2436560 2206370 1641320 2249140 TRUE FALSE FALSE 1344745.157 1828962.807 1427428.613 1805007.423 1515762.166 2019939.998 1826906.917 1704027.716 1783590.939 1685940.705 0.797623044 1.084832226 0.846665965 1.070623313 0.899060188 1.198108565 1.083612794 1.010728142 1.057920326 1 20.68512237 -5.279848629 24.64912897 1.047986242 0.927219586 0.278005763 0.099203227 938.6395532 1256792.599 0.027061021 0.040223379 5.25E-06 5.279848629 -0.120766656 AGEPDGES(ph)LDEQPSSSSSKR ddPTM_HeLa_A485_30min_R1 3 AGEPDGESLDEQPSSSSSKR 20 1 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGEPDGES(1)LDEQPSSSSSKR;AGEPDGES(1)LDEQPSSSSSKR;AGEPDGES(1)LDEQPSSSSSKR ;; 176.1 2.34E-14 3579040000 1754040 1605930 1195220 1663870 2312410 2048560 3125150 3491000 1411670 2297490 TRUE FALSE FALSE 2144220.147 1793729.544 1637381.615 1754763.005 2082178.341 2155819.434 2457436.172 2634826.776 1694979.22 1724768.025 1.243193354 1.039983069 0.949334398 1.017390733 1.207222253 1.249918483 1.424792283 1.527641247 0.982728805 1 20.71797091 -5.928362195 3.485498786 1.278701857 1.053250186 0.167442498 0.172758531 0.332955859 8.146671352 0.056441685 0.063970026 1.18E-06 5.928362195 -0.225451671 AGEPDGES(ph)LDEQPSSSSSKR ddPTM_HeLa_A486_30min_R1 3 AGEPDGESLDEQPSSSSSKR 20 1 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGEPDGES(1)LDEQPSSSSSKR;AGEPDGES(1)LDEQPSSSSSKR;AGEPDGES(1)LDEQPSSSSSKR ;; 226.24 8.16E-36 5338810000 2528640 2255570 1369530 1032730 2482260 2263940 3034260 3111350 1643030 2916440 TRUE FALSE FALSE 2351395.394 2076830.419 1899848.693 2404247.631 2170911.805 1984638.101 2275056.055 2402963.525 1785449.163 2186144.441 1.075590135 0.949996889 0.86904079 1.099766139 0.993032191 0.907825697 1.040670512 1.099178755 0.816711435 1 21.05995729 -4.249879691 23.63475462 0.979318166 1.07559026 0.102874443 0.088219703 2045.355833 4181735.686 0.021464418 0.311967999 5.62E-05 4.249879691 0.096272093 AGEPNS(ph)PDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_HeLa_A485_30min_R1 5 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 2 0 AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR ;;;; 242.92 2.47E-50 23159303000 1135144 1173144 1370830 1267279 1940747 1370180 1709355 1655803 1531796 1601853 TRUE FALSE FALSE 1387652.867 1310332.986 1877957.062 1336507.243 1747519.414 1441920.506 1344137.34 1249714.718 1839213.407 1202540.527 1.153934388 1.089637277 1.561658023 1.111403078 1.453189622 1.199061881 1.117748059 1.039228774 1.529439853 1 20.19765408 -6.504019049 24.57104747 1.172520598 1.276220849 0.06135943 0.191740993 1910.635215 2489246.721 0.066291635 0.057475668 3.13E-07 6.504019049 0.10370025 AGEPNS(ph)PDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_HeLa_A486_30min_R1 8 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 2 0 AGEPNS(1)PDAEEANS(0.999)PDVT(0.001)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(0.998)PDVT(0.002)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(0.998)PDVT(0.002)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(0.999)PDAEEANS(0.952)PDVT(0.049)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR ;;;;;;; 210.99 2.45E-29 31844030000 845171 1246469 1123687 389833 1563544 1237611 1361442 1446181 1087601 986887 TRUE FALSE FALSE 785928.8774 1147694.257 1558808.7 907550.9251 1367429.732 1084927.138 1020794.812 1116917.156 1181875.13 739764.0716 1.062404769 1.551432816 2.107170055 1.226811304 1.848467349 1.466585334 1.379892388 1.509828875 1.597637917 1 19.49670571 -10.23689812 5.679082033 0.999974984 1.539437663 0.242755492 0.278977603 8.61E-05 1.16E-05 0.263130879 0.06381566 5.80E-11 10.23689812 0.539462679 AGEPNS(ph)PDAEEANSPDVTAGCDPAGVHPPR ddPTM_HeLa_A486_30min_R1 3 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 AGEPNS(0.995)PDAEEANS(0.005)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR ;; 192.91 2.32E-21 8279440000 209896 249878 181867 119713 306008 277919 323625 339933 227233 295094 TRUE FALSE FALSE 195183.3743 230076.7572 252290.773 278697.914 267625.6232 243632.1795 242650.602 262537.6766 246929.7394 221200.5417 0.882381991 1.040127459 1.140552239 1.259933235 1.209877793 1.101408602 1.096971102 1.186876283 1.116316161 1 17.75499539 -4.41632458 2.2930296 1.14968351 0.859806873 0.573345392 0.067863939 0.296416041 2.327585832 0.018286152 0.150437385 3.83E-05 4.41632458 -0.289876636 AGEPNSPDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_HeLa_A485_30min_R1 3 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(0.001)PDAEEANS(0.999)PDVTAGCDPAGVHPPR ;; 160.58 3.19E-14 20528200000 213592 185602 222202 346296 347835 230364 339788 285710 263442 422782 TRUE FALSE FALSE 261104.8035 207306.5394 304403.7664 365213.2736 313203.3261 242425.5028 267189.518 215639.1745 316312.393 317390.2281 0.822661759 0.653159805 0.959083612 1.15067586 0.986808346 0.763808969 0.841832843 0.679413402 0.996604069 1 18.27589819 -13.99966103 0.010523247 1.920188201 0.01282012 0.04183772 0.14798834 71679.71392 57.16080554 6068.638156 4414.094885 1.00E-14 13.99966103 -1.907368081 AGEPNSPDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_HeLa_A486_30min_R1 4 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(0.001)PDAEEANS(0.999)PDVTAGCDPAGVHPPR;AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR ;;; 214.03 5.98E-30 12712060000 299717 482598 376333 138887 533506 451891 471801 521392 336496 404711 TRUE FALSE FALSE 278708.386 444355.1769 522059.2161 323335.955 466588.7027 396141.2829 353751.3996 402682.4235 365663.7442 303368.7314 0.918711644 1.464736246 1.720873518 1.065818331 1.538025032 1.30580789 1.166077328 1.327369573 1.205344211 1 18.21071287 -8.305991903 0.582386853 0.993310612 1.351926005 0.159463884 0.218995698 2.331849024 1.627107724 0.257431783 0.098294526 4.94E-09 8.305991903 0.358615393 AGET(ph)RFTDTR ddPTM_HeLa_A485_30min_R1 1 AGETRFTDTR 10 1 P13639 P13639 EEF2 Elongation factor 2 1 0 AGET(0.724)RFT(0.275)DT(0.001)R 72.652 0.027575 939850000 767720 739260 808770 881730 1117100 571720 1354900 1156100 709990 909640 TRUE FALSE FALSE 938496.6654 825710.0263 1107967.679 929896.6772 1005877.602 601654.3752 1065414.546 872564.6623 852478.4806 682883.4887 1.374314478 1.209152132 1.622484212 1.361720839 1.472985682 0.881049821 1.560170313 1.277765061 1.248351285 1 19.38127993 AGETRFT(ph)DTR ddPTM_HeLa_A485_30min_R1 6 AGETRFTDTR 10 1 P13639 P13639 EEF2 Elongation factor 2 1 0 AGET(0.031)RFT(0.776)DT(0.193)R;AGET(0.154)RFT(0.842)DT(0.004)R;AGETRFT(0.999)DT(0.001)R;AGETRFT(1)DTR;AGETRFT(0.999)DT(0.001)R;AGET(0.006)RFT(0.988)DT(0.007)R ;;;;; 117.03 0.00048836 14005810000 4483420 5224800 6845770 4992220 7924790 3578850 9103180 7467190 4525400 4680490 TRUE FALSE FALSE 5480741.311 5835794.91 9378305.199 5264932.338 7135770.082 3766233.052 7158211.227 5635849.944 5433606.271 3513729.981 1.559807197 1.660854688 2.669045501 1.498388427 2.030824827 1.071861831 2.037211529 1.60395078 1.546392665 1 21.7445719 -6.216057661 24.98773496 1.526212339 1.893613949 0.205642213 0.411440501 822.1713133 452697.725 0.133274269 0.133273819 6.08E-07 6.216057661 0.36740161 AGETRFT(ph)DTR ddPTM_HeLa_A486_30min_R1 6 AGETRFTDTR 10 1 P13639 P13639 EEF2 Elongation factor 2 1 0 AGET(0.135)RFT(0.861)DT(0.004)R;AGET(0.005)RFT(0.988)DT(0.008)R;AGET(0.001)RFT(0.998)DT(0.001)R;AGETRFT(0.999)DT(0.001)R;AGET(0.006)RFT(0.992)DT(0.003)R;AGET(0.005)RFT(0.976)DT(0.019)R ;;;;; 126.83 0.00012309 10543360000 11385120 10292920 9686360 5592075 17028590 15194810 18233260 21362000 8641027 10551720 TRUE FALSE FALSE 10587081.88 9477271.533 13437178 13018633.21 14892705.46 13320228.83 13671105.5 16498338.93 9390038.178 7909500.632 1.338527219 1.198213639 1.698865532 1.645948817 1.882888206 1.684079622 1.72844104 2.085888819 1.187184705 1 22.91515518 -4.765048336 24.96854733 1.670254917 1.268370367 0.153618153 0.302554635 116.366859 805107.9917 0.073330618 0.162889178 1.72E-05 4.765048336 -0.401884551 AGETRFT(ph)DTRK ddPTM_HeLa_A485_30min_R1 2 AGETRFTDTRK 11 2 P13639 P13639 EEF2 Elongation factor 2 1 0 AGET(0.114)RFT(0.869)DT(0.017)RK;AGET(0.142)RFT(0.857)DTRK ; 94.09 0.0021781 954390000 650090 747870 493490 593550 783810 494920 1608910 1437570 431150 509910 TRUE FALSE FALSE 794700.2777 835326.8909 676052.4868 625974.1336 705771.1243 520833.2459 1265153.235 1085003.703 517677.8503 382798.8212 2.076025927 2.182156383 1.766077766 1.635256168 1.843712899 1.360592607 3.305008179 2.834396668 1.352349646 1 18.54622686 AGETRFT(ph)DTRK ddPTM_HeLa_A486_30min_R1 1 AGETRFTDTRK 11 2 P13639 P13639 EEF2 Elongation factor 2 1 0 AGET(0.038)RFT(0.962)DTRK 86.944 0.0031598 196400000 279770 180450 117190 165960 294490 297950 479790 495840 131940 294330 TRUE FALSE FALSE 260159.5677 166150.4848 162569.1065 386363.2672 257552.3182 261191.9583 359741.4673 382948.0561 143376.6654 220627.8522 1.179178264 0.75308028 0.736847614 1.751198968 1.167360855 1.183857594 1.630535146 1.735719458 0.649857504 1 17.7512554 -5.237208411 24.77665419 1.336377617 0.876039838 0.228431226 0.343621119 936.1894459 957271.1099 0.091073068 0.15763968 5.79E-06 5.237208411 -0.460337779 AGFAGDDAPR ddPTM_HeLa_A485_30min_R1 4 AGFAGDDAPR 10 0 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 230.56 2.25E-26 4923930000 4641280 5975190 5954150 4650410 7253910 5980260 6619050 7626340 5585980 6066710 FALSE FALSE TRUE 5673716.724 6673936.493 8156837.858 4904450.123 6531685.25 6293377.166 5204835.895 5755968.157 6707034.948 4554390.847 1.245768515 1.465385102 1.79098328 1.076861931 1.434151233 1.381826325 1.142817134 1.263828326 1.472652474 1 22.11882667 -13.33838025 0.134612718 2.16E-17 1.511923455 0.247931146 0.190816103 164.0284391 1.625635048 45.74678365 1.374134019 4.59E-14 13.33838025 1.511923455 AGFAGDDAPR ddPTM_HeLa_A486_30min_R1 6 AGFAGDDAPR 10 0 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;;;; ;;;;; 230.56 2.25E-26 5679170000 6706480 7855680 7305750 2727460 14772230 7296680 7975180 8401140 6786700 7224700 FALSE FALSE TRUE 6236390.384 7233167.307 10134732.05 6349664.718 12919359.17 6396489.809 5979705.611 6488383.818 7374976.62 5415588.095 1.15156291 1.335619914 1.871400091 1.172479259 2.385587482 1.181125613 1.104165514 1.19809404 1.361805309 1 22.36868658 -6.445833053 25 1.176768145 1.584808086 0.260954881 0.348483235 171.8213547 55752.16791 0.120574927 0.106337053 3.58E-07 6.445833053 0.40803994 AGFDS(ph)DYDQALADIR ddPTM_HeLa_A485_30min_R1 1 AGFDSDYDQALADIR 15 0 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1;P52701-4 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 AGFDS(1)DYDQALADIR 106.42 0.0002961 54041000 26446 30656 27383 28827 30160 25110 44943 32476 28141 40731 TRUE FALSE FALSE 32328.82146 34240.95253 37513.1112 30401.74602 27157.1645 26424.72077 35340.5609 24511.21008 33788.64058 30577.5113 1.057274451 1.119808352 1.226820287 0.994251812 0.888141753 0.86418808 1.155769695 0.80160906 1.105016044 1 14.90018337 -5.417976963 6.47247308 0.961408868 1.132091049 0.324026326 0.107259113 0.265923974 14.08838213 0.029146057 0.043338342 3.82E-06 5.417976963 0.170682181 AGFNYES(ph)PSK ddPTM_HeLa_A486_30min_R1 2 AGFNYESPSK 10 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97;E7EVN4;F8W8T0 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 AGFNYES(0.875)PS(0.125)K;AGFNYES(0.983)PS(0.017)K ; 96.64 0.0022237 143544000 343950 356150 279540 175301 355150 406810 445920 426430 327840 518720 TRUE FALSE FALSE 319840.8812 327927.3769 387785.3743 408109.5872 310603.7754 356621.9183 334346.0995 329341.1979 356257.4352 388829.1357 0.82257437 0.843371411 0.99731563 1.049585923 0.798818162 0.917168714 0.859879234 0.84700751 0.916231327 1 18.5687768 -5.807860217 24.99999907 0.882068715 0.927090474 0.047933934 0.079264444 386.2698142 208023.8357 0.025581835 0.029007156 1.56E-06 5.807860217 0.045021759 AGFNYES(ph)PSKGGNFPSFPHDEVTDR ddPTM_HeLa_A485_30min_R1 3 AGFNYESPSKGGNFPSFPHDEVTDR 25 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 AGFNYES(0.946)PS(0.054)KGGNFPSFPHDEVTDR;AGFNY(0.002)ES(0.945)PS(0.053)KGGNFPSFPHDEVTDR;AGFNYES(0.929)PS(0.071)KGGNFPSFPHDEVTDR ;; 135.49 1.66E-06 870610000 335190 342898 293266 388116 471970 454660 569540 620520 363896 581570 TRUE FALSE FALSE 409751.8591 382996.9383 401757.2972 409317.7943 424979.0096 478465.2946 447853.1263 468336.4971 436926.5893 436595.302 0.938516418 0.877235592 0.920205269 0.937522214 0.973393455 1.095901152 1.025785491 1.072701641 1.000758797 1 18.73593708 -5.920802338 2.634668304 1.042672566 0.913339072 0.752627575 0.032417461 0.123438658 1.739450943 0.010485047 0.011996377 1.20E-06 5.920802338 -0.129333495 AGFNYES(ph)PSKGGNFPSFPHDEVTDR ddPTM_HeLa_A486_30min_R1 3 AGFNYESPSKGGNFPSFPHDEVTDR 25 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 AGFNY(0.003)ES(0.926)PS(0.07)KGGNFPSFPHDEVTDR;AGFNYES(0.941)PS(0.059)KGGNFPSFPHDEVTDR;AGFNYES(0.947)PS(0.053)KGGNFPSFPHDEVTDR ;; 132.13 2.60E-06 895970000 676130 621120 398590 214493 702880 670750 930630 834400 582800 909540 TRUE FALSE FALSE 628736.7785 571900.1891 552934.7226 499350.5439 614718.2363 587999.6847 697776.5308 644425.3348 633317.5732 681785.2639 0.922191798 0.838827442 0.811010082 0.732416158 0.901630277 0.862441176 1.023454991 0.945202792 0.928910622 1 19.37895789 -6.500401333 2.318368996 0.9688341 0.831728265 0.550822185 0.05593588 0.238608807 2.564579578 0.024287971 0.019158371 3.16E-07 6.500401333 -0.137105835 AGGAGVPAFYTPTGYGTLVQEGGS(ph)PIKYNK ddPTM_HeLa_A485_30min_R1 2 AGGAGVPAFYTPTGYGTLVQEGGSPIKYNK 30 1 P55809 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 1 0 AGGAGVPAFYTPTGYGTLVQEGGS(1)PIKYNK;AGGAGVPAFYTPTGYGTLVQEGGS(1)PIKYNK ; 269.34 1.48E-64 523030000 131843 94927 76386 149010 131960 150459 189849 202642 118359 250410 TRUE FALSE FALSE 161171.0205 106027.8869 104644.3601 157150.039 118821.5991 158336.8006 149286.2102 152943.7318 142112.5656 187987.3955 0.857350144 0.564015936 0.556656258 0.83596051 0.63207216 0.842273495 0.794128829 0.813585035 0.755968587 1 17.52027641 -8.744505614 0.217177711 1.111225053 0.629441926 0.404927715 0.103357851 6.643996755 0.659229136 0.907914686 0.305254804 1.80E-09 8.744505614 -0.481783126 AGGAGVPAFYTPTGYGTLVQEGGS(ph)PIKYNK ddPTM_HeLa_A486_30min_R1 2 AGGAGVPAFYTPTGYGTLVQEGGSPIKYNK 30 1 P55809 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 1 0 AGGAGVPAFYTPTGYGTLVQEGGS(1)PIKYNK;AGGAGVPAFYTPTGYGTLVQEGGS(1)PIKYNK ; 244.22 1.09E-50 642330000 177997 217779 111025 116007 225710 241100 295317 308165 204462 331670 TRUE FALSE FALSE 165520.3295 200521.3989 154016.8534 270070.1587 197399.3471 211355.5333 221425.5631 238002.5567 222184.9308 248617.6732 0.665762523 0.806545232 0.619492779 1.08628705 0.79398759 0.850122723 0.890626801 0.957303452 0.893681161 1 17.92356933 -2.613798989 0.283105346 0.962876058 3.26E-14 0.412188829 0.104309017 22.00264339 0.690878194 0.116027326 8.744319303 0.00243333 2.613798989 -0.962876058 AGGAS(ph)PAASSTAQPPTQHR ddPTM_HeLa_A485_30min_R1 9 AGGASPAASSTAQPPTQHR 19 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(0.998)PAAS(0.002)STAQPPTQHR ;;;;;;;; 229.89 2.43E-35 25121497000 728894 982987 953815 781281 1194299 956410 1119774 1290515 948824 1097062 TRUE FALSE FALSE 891033.9556 1097938.779 1306670.86 823960.4027 1075390.398 1006486.149 880525.1372 974014.1728 1139244.274 823584.6333 1.081897257 1.333121982 1.586565372 1.000456261 1.305743641 1.222079806 1.069137404 1.182652193 1.383275291 1 19.65155739 -5.279764971 24.98810194 1.17790197 1.333787648 0.180991506 0.162113419 1453.083393 1981367.414 0.0453782 0.067446015 5.25E-06 5.279764971 0.155885677 AGGAS(ph)PAASSTAQPPTQHR ddPTM_HeLa_A486_30min_R1 10 AGGASPAASSTAQPPTQHR 19 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 AGGAS(0.999)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(0.982)PAAS(0.018)STAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(0.999)PAAS(0.001)STAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR ;;;;;;;;; 210.33 4.26E-26 23709427000 1026719 1258724 993523 313363.6 1479276 1154185 1304613 1314310 1018975 1081457 TRUE FALSE FALSE 954751.3001 1158978.126 1378241.713 729526.2973 1293731.41 1011793.39 978185.0286 1015070.304 1107300.573 810653.1281 1.177755648 1.429684394 1.700162086 0.899924113 1.595912438 1.248121243 1.206662868 1.252163557 1.365936348 1 19.6287252 -13.28401387 0.182730875 3.79E-08 1.391659326 0.169744502 0.212918051 175.5162015 2.150859553 64.66495826 0.635641496 5.20E-14 13.28401387 1.391659288 AGGDLSLS(ph)PGR ddPTM_HeLa_A485_30min_R1 3 AGGDLSLSPGR 11 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AGGDLSLS(1)PGR;AGGDLSLS(1)PGR;AGGDLSLS(1)PGR ;; 172.74 2.44E-08 2455120000 1017640 1338170 1300990 1252270 1434710 1213250 1380970 1509790 1034800 1559950 TRUE FALSE FALSE 1244010.507 1494657.341 1782280.34 1320678.339 1291865.235 1276773.894 1085914.478 1139511.635 1242474.868 1171083.174 1.062273402 1.276303319 1.521907564 1.127740855 1.103137048 1.090250396 0.927273572 0.973040738 1.060962104 1 20.15941211 -5.783424566 1.921132274 1.006626347 1.283995177 0.496710685 0.115882964 0.279121483 2.123515076 0.042042986 0.054072427 1.65E-06 5.783424566 0.277368829 AGGDLSLS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 AGGDLSLSPGR 11 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AGGDLSLS(1)PGR;AGGDLSLS(1)PGR ; 221.24 7.05E-18 2161100000 1082280 1298760 1102230 441220 1498270 1186730 1270960 1223290 1128220 1422160 TRUE FALSE FALSE 1006417.761 1195841.528 1529042.975 1027182.458 1310343.006 1040323.318 952952.3652 944773.5712 1226015.018 1066041.879 0.944069628 1.121758489 1.434317924 0.963547941 1.229166538 0.975874718 0.893916443 0.88624433 1.150062715 1 20.02383268 -6.286901422 19.83898465 0.968652954 1.144344626 0.224178758 0.145226701 83.90006081 65369.73383 0.051103942 0.045123538 5.17E-07 6.286901422 0.175691672 AGGEPWGAK(ac)KPR ddPTM_HeLa_A486_30min_R1 1 AGGEPWGAKKPR 12 2 Q8N163-2;Q8N163;E5RHJ4 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 1 AGGEPWGAK(0.987)K(0.013)PR 103.43 0.014286 24682000 41190 50219 41004 13196 59924 43129 55088 53476 47286 53376 FALSE TRUE FALSE 38302.79371 46239.46355 56881.84693 30720.95489 52407.77315 37808.18248 41304.39974 41300.68217 51384.78855 40010.30218 0.95732328 1.155688936 1.421680013 0.767826115 1.309856969 0.944961183 1.032344109 1.032251193 1.284288939 1 15.2880839 -5.246806094 24.98108117 1.059749936 1.175976494 0.091070156 0.180287454 2181.362133 3723884.744 0.047174045 0.081243529 5.66E-06 5.246806094 0.116226558 AGGGAT(ph)PVSS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 AGGGATPVSSPSR 13 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 2 0 AGGGAT(1)PVS(0.001)S(0.996)PS(0.004)R;AGGGAT(1)PVS(0.024)S(0.958)PS(0.017)R ; 125.84 7.67E-05 1070160000 1102500 1620330 1820940 1100280 1991150 1556310 1550640 1860910 1509130 1600300 TRUE FALSE FALSE 1347747.321 1809813.499 2494581.482 1160385.51 1792904.115 1637795.985 1219333.096 1404518.905 1811998.548 1201374.661 1.121837645 1.506452197 2.076439234 0.965881459 1.492377168 1.363268294 1.014948239 1.169093165 1.508270989 1 20.19625471 -5.295387188 24.99372543 1.232550243 1.562064689 0.244306122 0.282606194 919.251252 676787.3267 0.079925069 0.118555447 5.07E-06 5.295387188 0.329514447 AGGGAT(ph)PVSS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 AGGGATPVSSPSR 13 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 2 0 AGGGAT(0.981)PVS(0.019)S(0.944)PS(0.055)R 196.8 9.80E-19 545820000 919810 1083600 954190 379540 1264200 988720 1057700 1057600 886220 963140 TRUE FALSE FALSE 855336.0689 997731.5896 1323677.922 883588.3009 1105632.248 866741.779 793052.2728 816807.5672 963038.2631 721963.475 1.18473593 1.381969621 1.833441674 1.223868425 1.531424076 1.200534111 1.09846592 1.131369654 1.333915491 1 19.46156633 -6.370472254 5.270218446 1.152126359 1.438514284 0.365409723 0.183975833 0.263592651 10.67467691 0.065991024 0.057876283 4.26E-07 6.370472254 0.286387925 AGGGATPVSS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 AGGGATPVSSPSR 13 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 AGGGAT(0.001)PVS(0.1)S(0.738)PS(0.162)R 65.593 0.016861 107520000 151300 198450 190010 126160 243420 194710 218940 255120 196310 209930 TRUE FALSE FALSE 184956.163 221657.0012 260302.606 133051.8013 219184.2501 204904.7145 172161.6804 192551.42 235707.6163 157598.3145 1.173592266 1.406468096 1.651683946 0.844246347 1.390777883 1.300170723 1.092408133 1.221786036 1.495622698 1 17.26589258 -10.94074095 2.676493124 0.803349979 1.283464986 0.139979947 0.212794043 14785268.08 8068481.343 18102170.9 0.052775703 1.15E-11 10.94074095 0.480115008 AGGGDLLLPPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 AGGGDLLLPPSPK 13 0 Q5TH69 Q5TH69 ARFGEF3 Brefeldin A-inhibited guanine nucleotide-exchange protein 3 1 0 AGGGDLLLPPS(1)PK 107.14 0.00035588 0 148820 152720 99395 269240 207640 161380 259730 242460 139920 316380 TRUE FALSE FALSE 181924.4956 170579.2755 136165.3467 283947.8994 186966.6325 169829.6073 204236.5637 182996.3048 168000.6606 237512.2885 0.765958244 0.718191368 0.573298112 1.195508246 0.787187196 0.715035034 0.859898934 0.770470892 0.707334604 1 17.85764263 -11.48331836 2.150989664 3.288820908 0.791124642 0.146526087 0.153267578 6066454.706 508691.1905 67667219.84 0.03979143 3.29E-12 11.48331836 -2.497696266 AGGGGGLGAGS(ph)PALSGGQGR ddPTM_HeLa_A485_30min_R1 5 AGGGGGLGAGSPALSGGQGR 20 0 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 0 AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR ;;;; 343.05 6.79E-115 5464960000 1958209 2119062 1934574 2165114 2215356 2024358 2378991 2262861 2023243 3682040 TRUE FALSE FALSE 2393805.836 2366867.868 2650253.427 2283388.695 1994787.378 2130350.255 1870700.138 1707890.792 2429289.312 2764175.191 0.866010897 0.856265506 0.958786345 0.826065114 0.721657363 0.770700157 0.676766127 0.617866334 0.87884781 1 21.39841762 -5.539594876 5.291134364 0.754034333 0.890879496 0.178665338 0.104121634 0.232888851 19.43441647 0.029628528 0.040036126 2.89E-06 5.539594876 0.136845164 AGGGGGLGAGS(ph)PALSGGQGR ddPTM_HeLa_A486_30min_R1 5 AGGGGGLGAGSPALSGGQGR 20 0 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 0 AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(1)PALSGGQGR ;;;; 323.87 1.84E-102 5237334000 1153445 1411857 1228158 373710 1650082 1335024 1312765 1324767 1319342 1373913 TRUE FALSE FALSE 1072594.462 1299976.309 1703733.669 870015.7663 1443113.329 1170322.312 984297.312 1023146.474 1433703.627 1029876.242 1.041478984 1.262264587 1.654309129 0.844777004 1.401249267 1.136371794 0.955743294 0.993465459 1.392112536 1 19.97403955 -6.511239465 24.17018238 1.079253165 1.245560444 0.094896251 0.228176774 876.0389329 1819196.576 0.082026289 0.068352893 3.08E-07 6.511239465 0.166307279 AGGGGGLGAGS(ph)PALSGGQGRR ddPTM_HeLa_A485_30min_R1 1 AGGGGGLGAGSPALSGGQGRR 21 1 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 0 AGGGGGLGAGS(1)PALSGGQGRR 127.35 8.62E-07 217050000 110400 118450 90580 87469 110550 113250 173490 178350 92486 155260 TRUE FALSE FALSE 134958.0991 132301.6971 124089.3113 92247.20999 99543.25384 119179.5949 136422.4442 134609.3829 111047.0919 116556.5393 1.157876683 1.135086009 1.064627622 0.791437447 0.854034054 1.022504576 1.170440071 1.154884862 0.952731545 1 16.83067042 -4.999066235 13.27004646 0.99600434 1.134872232 0.238927629 0.109906356 0.206397512 2246.801895 0.033602771 0.067108391 1.00E-05 4.999066235 0.138867892 AGGGGGLGAGS(ph)PALSGGQGRR ddPTM_HeLa_A486_30min_R1 1 AGGGGGLGAGSPALSGGQGRR 21 1 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 0 AGGGGGLGAGS(1)PALSGGQGRR 95.591 0.00043496 157190000 82878 118390 71860 65822 133100 114450 140740 161210 91029 139440 TRUE FALSE FALSE 77068.68018 109008.3452 99686.11648 153236.9425 116405.3569 100330.3226 105525.3634 124506.0022 98919.46701 104523.3164 0.737334815 1.042909362 0.953721331 1.466055113 1.113678372 0.959884609 1.009586828 1.191179217 0.946386609 1 16.67346528 -4.110022067 1.793125772 1.094897108 0.512039519 0.317962272 0.14923312 1.706068783 4.040310869 0.04152929 1.903404865 7.76E-05 4.110022067 -0.582857589 AGGK(ac)AGK(ac)DSGK ddPTM_HeLa_A485_30min_R1 2 AGGKAGKDSGK 11 2 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 2 ; AGGK(1)AGK(1)DSGK;AGGK(1)AGK(1)DSGK 195.51 1.02E-13 167569000 200485 208226 165654 228369 275020 305590 503190 647450 473200 832010 FALSE TRUE FALSE 245082.1966 232576.2194 226936.308 240844.2202 247638.0431 321590.2199 395679.3458 488661.8723 568166.8996 624605.219 0.392379361 0.37235715 0.363327589 0.385594313 0.3964713 0.514869569 0.633487095 0.782353169 0.909641614 1 19.2525851 -7.167894935 0.88045827 0.99902828 0.367268675 0.99675015 0.013119252 0.031164868 0.043906879 0.012321765 0.005489884 6.79E-08 7.167894935 -0.631759604 down AGGK(ac)AGK(ac)DSGK ddPTM_HeLa_A486_30min_R1 2 AGGKAGKDSGK 11 2 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 2 ; AGGK(1)AGK(1)DSGK;AGGK(1)AGK(1)DSGK 208.33 9.69E-20 270450000 440740 527480 373930 217612 623190 597820 700760 670110 507910 694530 FALSE TRUE FALSE 409846.402 485680.5638 518725.7102 506611.7335 545023.6992 524067.0466 525422.4361 517540.5814 551936.0477 520615.1674 0.787234848 0.932897453 0.996370722 0.97310214 1.04688402 1.006630385 1.009233824 0.994094321 1.060161291 1 18.98985782 -3.614258815 0.978614565 1.016037068 0.234171239 0.900351865 0.022926929 1.633240915 0.509212871 0.00711348 1.822370178 0.000243075 3.614258815 -0.781865829 AGGK(ac)AGK(ac)DSGK(ac)AK ddPTM_HeLa_A485_30min_R1 2 AGGKAGKDSGKAK 13 3 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 3 ; AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK 176.05 2.54E-09 2082890000 1140320 1190720 1007790 1401070 1587410 1955690 2658330 3699870 2391140 4086500 FALSE TRUE FALSE 1393980.25 1329964.346 1380613.459 1477606.906 1429361.887 2058086.904 2090356.079 2792471.081 2871019.865 3067810.756 0.454389257 0.433522291 0.450032146 0.481648649 0.465922444 0.670865013 0.681383646 0.910248807 0.935852989 1 21.54877806 -6.938606938 0.879932856 1.004193228 0.43955316 0.975390335 0.033670571 0.078127463 0.113800913 0.026462246 0.013519182 1.15E-07 6.938606938 -0.564640067 down AGGK(ac)AGK(ac)DSGK(ac)AK ddPTM_HeLa_A486_30min_R1 2 AGGKAGKDSGKAK 13 3 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 3 ; AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK 190.78 5.57E-14 2308000000 3281500 3652000 2471600 1373250 4107600 3984700 4500400 4582900 3449100 4768400 FALSE TRUE FALSE 3051483.796 3362602.22 3428669.712 3196995.4 3592386.506 3493108.227 3374352.32 3539473.714 3748070.765 3574361.603 0.853714351 0.940756027 0.959239745 0.894424167 1.005042831 0.977267724 0.944043355 0.990239407 1.048598654 1 21.76925416 -1 0.254454627 1.012337705 0.114214165 0.5977606 0.034092545 37.55395978 0.514078232 0.043720031 14.52434917 0.1 1 -0.89812354 AGGKPSQS(ph)PSQEAAGEAVLGAK ddPTM_HeLa_A486_30min_R1 2 AGGKPSQSPSQEAAGEAVLGAK 22 1 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 AGGKPS(0.211)QS(0.749)PS(0.04)QEAAGEAVLGAK;AGGKPS(0.375)QS(0.623)PS(0.002)QEAAGEAVLGAK ; 155.68 2.66E-10 334200000 853860 780520 483160 190855 822260 881940 1090510 1055340 743840 920840 TRUE FALSE FALSE 794008.8233 718668.7526 670252.4915 444320.0853 719124.4835 773135.2097 817652.8638 815062.1199 808316.6501 690255.6703 1.150311193 1.041163128 0.971020624 0.643703637 1.041823363 1.120070784 1.184565225 1.180811915 1.171039493 1 19.39677131 -6.11868332 4.23848939 1.144868075 0.948257655 0.287099202 0.130476257 0.296560226 8.866015669 0.046648316 0.047061039 7.61E-07 6.11868332 -0.19661042 AGGLDWPEATEVS(ph)PSR ddPTM_HeLa_A485_30min_R1 3 AGGLDWPEATEVSPSR 16 0 E9PKC4;Q9Y446;Q9Y446-2;E9PRW6;E9PJR7;E9PK71 E9PKC4 PKP3 Plakophilin-3 1 0 AGGLDWPEAT(0.001)EVS(0.978)PS(0.022)R;AGGLDWPEATEVS(0.969)PS(0.031)R;AGGLDWPEAT(0.001)EVS(0.979)PS(0.02)R ;; 143.46 8.71E-08 2214050000 984010 1007090 912120 1383580 1349290 1058630 1411640 1563260 1061780 1863350 TRUE FALSE FALSE 1202899.63 1124860.415 1249551.144 1459161.472 1214949.95 1114058.23 1110031.582 1179868.034 1274869.507 1398851.137 0.859919685 0.804131608 0.893269563 1.043114191 0.868534126 0.796409425 0.793530886 0.843455034 0.91136896 1 20.41581101 -8.062522738 4.154548432 0.99992154 0.863856056 0.275390669 0.068225693 0.432302606 20.10761194 0.073176846 0.019192939 8.66E-09 8.062522738 -0.136065484 AGGLDWPEATEVS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 AGGLDWPEATEVSPSR 16 0 E9PKC4;Q9Y446;Q9Y446-2;E9PRW6;E9PJR7;E9PK71 E9PKC4 PKP3 Plakophilin-3 1 0 AGGLDWPEAT(0.004)EVS(0.991)PS(0.005)R;AGGLDWPEAT(0.027)EVS(0.945)PS(0.028)R ; 120.77 5.51E-05 1863050000 1054650 1242520 989750 478770 1352390 1215210 1456790 1328210 1054870 1437920 TRUE FALSE FALSE 980724.4812 1144058.19 1373007.706 1114600.756 1182760.636 1065289.746 1092285.734 1025805.578 1146306.981 1077855.473 0.909884958 1.061420774 1.273832848 1.034091104 1.097327671 0.988341918 1.013387937 0.951709764 1.063507131 1 20.03973231 -6.262028362 24.99998819 1.00099612 1.083278712 0.141880334 0.087248087 103.9211411 4410910.737 0.030771474 0.028746086 5.47E-07 6.262028362 0.082282593 AGGPAT(ph)PLS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 2 0 AGGPAT(1)PLS(0.987)PT(0.013)R;AGGPAT(1)PLS(0.999)PT(0.001)R ; 143.98 5.49E-07 1816870000 3573700 3988800 3804200 1456530 5249200 3983800 4366600 4320000 3346900 4127800 TRUE FALSE FALSE 3323202.085 3672712.961 5277288.12 3390875.449 4590796.389 3492319.26 3274030.495 3336430.305 3637011.987 3094172.013 1.074019825 1.18697763 1.705557448 1.095891061 1.483691395 1.128676507 1.058128146 1.078295031 1.175439495 1 21.56112197 -6.450638122 8.728548276 1.085692899 1.312459487 0.279537168 0.178764914 0.525364989 59.85681228 0.062558522 0.055034837 3.54E-07 6.450638122 0.226766588 AGGPAT(ph)PLSPTR ddPTM_HeLa_A485_30min_R1 2 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGGPAT(1)PLSPTR;AGGPAT(0.985)PLS(0.015)PTR ; 142.77 0.00010204 0 300890 353180 325690 308120 459710 374830 445600 496290 323570 426100 TRUE FALSE FALSE 367821.9424 394481.3287 446176.2841 324951.8154 413939.6583 394455.5192 350393.9198 374574.0993 388507.531 319881.1118 1.149870777 1.233212322 1.394819099 1.015851838 1.294042202 1.233131638 1.095387964 1.170979109 1.214537266 1 18.28717628 -14 0.183107638 0.153639208 1.24182298 0.279300335 0.098085802 175.2967295 1.69625099 53.84180852 0.288993855 1.00E-14 14 1.088183772 AGGPAT(ph)PLSPTR ddPTM_HeLa_A486_30min_R1 3 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGGPAT(0.999)PLS(0.001)PTR;AGGPAT(1)PLSPTR;AGGPAT(0.997)PLS(0.003)PTR ;; 191.93 1.21E-12 895230000 615570 641990 516820 191303 752610 612370 664400 667530 521830 627310 TRUE FALSE FALSE 572421.7218 591116.3743 716946.5449 445363.0519 658210.636 536822.0155 498160.0927 515547.9911 567062.6446 470227.4929 1.217329336 1.257085949 1.524680194 0.947122528 1.399770634 1.141621925 1.059402311 1.096379941 1.205932561 1 18.84299937 -6.282371044 0.827487494 1.083926139 1.290965952 0.225171983 0.148474191 0.976274886 1.445378644 0.096652828 0.089502899 5.22E-07 6.282371044 0.207039813 AGGPATPLS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGGPATPLS(0.986)PT(0.014)R 172.21 1.12E-10 1078500000 336430 471440 469660 360090 497910 424680 499030 574840 374410 473250 TRUE FALSE FALSE 411267.6928 526570.807 643406.7782 379760.8049 448336.3321 446915.5881 392408.1638 433859.5887 449550.6527 355277.4845 1.157595713 1.482139539 1.810997899 1.068913234 1.26193286 1.25793389 1.104511771 1.221185151 1.26535081 1 18.43858674 -5.292321654 24.99994913 1.182710276 1.483434109 0.419750153 0.169163502 654.2999655 529670.202 0.04766185 0.070702686 5.10E-06 5.292321654 0.300723832 AGGPATPLS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGGPAT(0.012)PLS(0.983)PT(0.006)R 81.565 0.005268 1057200000 206870 227290 191780 81344 240870 205430 222770 236060 177100 234310 TRUE FALSE FALSE 192369.4813 209278.7126 266042.352 189372.9429 210657.8386 180086.1353 167030.5898 182314.2912 192451.1706 175637.2509 1.095265841 1.191539446 1.514726237 1.078204891 1.199391573 1.025329959 0.950997519 1.038016083 1.095730943 1 17.42223933 -6.011805146 1.724217297 1.019135444 1.247066753 0.406493595 0.116533667 0.364671222 2.192788647 0.046052734 0.050439117 9.73E-07 6.011805146 0.227931309 AGGPGLER ddPTM_HeLa_A485_30min_R1 1 AGGPGLER 8 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;H7C5L4;Q60FE5;P21333-2;P21333;H0Y5C6 O75369-8;Q60FE5 FLNB;FLNA Filamin-B;Filamin-A 0 0 105.12 0.015783 47004000 41317 53871 59635 42508 64861 53477 63101 63876 49740 66405 FALSE FALSE TRUE 50507.82411 60170.74483 81696.46812 44830.1044 58403.2111 56276.97303 49618.95586 48210.31085 59722.36176 49851.45559 1.013166486 1.207000761 1.638798048 0.89927373 1.17154475 1.128893276 0.99533615 0.967079301 1.198006378 1 15.60534801 AGGPS(ph)DDDNADKPK ddPTM_HeLa_A485_30min_R1 4 AGGPSDDDNADKPK 14 1 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK ;;; 209.7 1.58E-22 4468570000 2205980 1284560 785745 4670360 2148100 1923460 4165340 3421220 1411467 6818280 TRUE FALSE FALSE 2696692.64 1434778.118 1076424.773 4925489.941 1934227.622 2024169.391 3275381.081 2582160.431 1694735.48 5118608.277 0.526840988 0.280306294 0.210296376 0.962271319 0.377881548 0.395453077 0.639896805 0.504465333 0.331093021 1 22.28732017 -10.31461929 3.242763702 1.003145071 0.472237795 0.380125002 0.203084804 105907382.6 146598027.7 3231444.598 0.054240187 4.85E-11 10.31461929 -0.530907276 AGGPS(ph)DDDNADKPK ddPTM_HeLa_A486_30min_R1 5 AGGPSDDDNADKPK 14 1 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK ;;;; 176.94 3.41E-13 9786510000 6374410 5291110 1816158 5835860 4551770 7808060 12159440 10170790 4109790 14911630 TRUE FALSE FALSE 5927596.776 4871823.174 2519423.016 13586177.01 3980844.563 6844780.944 9117019.503 7855123.144 4466029.906 11177660.79 0.530307449 0.435853553 0.225398056 1.215475873 0.356142903 0.612362557 0.815646464 0.70275197 0.399549601 1 23.41411496 -14 0.090638783 2.125468855 0.304495544 0.169874786 0.267063964 398.6940366 2.503059961 89.7823012 6.169603529 1.00E-14 14 -1.820973311 AGGPT(ph)TPLSPTR ddPTM_HeLa_A485_30min_R1 3 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPT(0.5)T(0.5)PLSPTR;AGGPT(0.5)T(0.5)PLSPTR;AGGPT(0.5)T(0.5)PLSPTR ;; 193.28 8.82E-13 2276590000 1804230 2417080 2287480 2013790 2757690 2288690 2564000 2912650 2042850 2430450 TRUE FALSE FALSE 2205574.739 2699736.48 3133714.042 2123798.249 2483124.701 2408522.269 2016180.454 2198318.021 2452831.257 1824583.544 1.208809948 1.479645308 1.717495509 1.163990685 1.360926831 1.320039456 1.105008571 1.204832756 1.344323895 1 20.79913578 -6.044960221 1.04597855 1.18320079 1.44220825 0.287244224 0.163628523 0.69076758 1.613440501 0.083428926 0.093697136 9.02E-07 6.044960221 0.259007459 AGGPT(ph)TPLSPTR ddPTM_HeLa_A486_30min_R1 3 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPT(0.5)T(0.5)PLSPTR;AGGPT(0.5)T(0.5)PLSPTR;AGGPT(0.5)T(0.5)PLSPTR ;; 215.14 4.78E-18 1918390000 1867940 2028020 1796090 614200 2308960 1772330 1855120 2000360 1661400 1969230 TRUE FALSE FALSE 1737007.052 1867312.309 2491584.149 1429888.64 2019348.707 1553677.944 1390949.355 1544921.696 1805411.49 1476121.99 1.17673679 1.265012188 1.687925636 0.96867918 1.368009365 1.052540342 0.942299731 1.046608414 1.223077429 1 20.49338052 -6.005289687 1.374002675 1.050111792 1.328508859 0.276020163 0.184375688 0.551705231 2.147668387 0.077593926 0.086953616 9.88E-07 6.005289687 0.278397067 AGGPTT(ph)PLS(ph)PTR ddPTM_HeLa_A485_30min_R1 4 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 2 0 AGGPT(0.001)T(0.999)PLS(0.999)PT(0.001)R;AGGPT(0.158)T(0.842)PLS(0.99)PT(0.01)R;AGGPT(0.128)T(0.872)PLS(0.995)PT(0.005)R;AGGPT(0.094)T(0.906)PLS(0.999)PT(0.001)R ;;; 206.66 7.42E-17 11527000000 7507210 8893410 8952280 7991560 13086400 9218180 10326500 11164700 8390830 10979300 TRUE FALSE FALSE 9177162.965 9933416.937 12264100.91 8428118.687 11783472.07 9700829.651 8120158.915 8426539.819 10074792.62 8242362.569 1.113414132 1.20516622 1.487935141 1.022536756 1.429623117 1.176947698 0.98517371 1.022345201 1.222318544 1 22.9746265 -6.543758524 8.76116207 1.06199743 1.254888334 0.297148072 0.140834906 0.281551676 102.4368768 0.051748021 0.040480706 2.86E-07 6.543758524 0.192890904 AGGPTT(ph)PLS(ph)PTR ddPTM_HeLa_A486_30min_R1 4 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 2 0 AGGPT(0.002)T(0.998)PLS(0.999)PT(0.001)R;AGGPT(0.001)T(0.999)PLS(1)PTR;AGGPT(0.127)T(0.873)PLS(0.978)PT(0.022)R;AGGPT(0.002)T(0.998)PLS(0.999)PT(0.001)R ;;; 294.48 2.53E-49 12928700000 9732500 11230800 9107300 3360830 13118300 10087400 10792800 11712300 8922000 10641800 TRUE FALSE FALSE 9050302.009 10340830.51 12633890.46 7824182.087 11472880.49 8842919.149 8092327.285 9045664.968 9695366.144 7977024.014 1.134546166 1.296326862 1.583784935 0.980839731 1.438240686 1.108548643 1.014454422 1.133964866 1.215411428 1 22.92741919 -6.390395121 9.190160098 1.09646571 1.286629654 0.262758798 0.161127365 0.492829016 34.27871303 0.055620328 0.049006421 4.07E-07 6.390395121 0.190163945 AGGPTT(ph)PLSPTR ddPTM_HeLa_A485_30min_R1 1 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPT(0.069)T(0.931)PLSPTR 158.58 8.81E-08 779440000 360230 504940 512080 381230 636720 492530 527750 604820 418160 454060 TRUE FALSE FALSE 440361.9207 563988.3406 701519.7014 402055.6296 573325.9211 518318.1092 414991.9012 456486.9467 502080.8764 340871.1984 1.291871894 1.654549705 2.058019876 1.179494283 1.681942986 1.5205688 1.217444898 1.339177228 1.47293429 1 18.37886718 -8.119131823 0.310004627 0.936859679 1.648850464 0.313013108 0.23981733 2.640114188 0.701940763 0.650622118 0.335039795 7.60E-09 8.119131823 0.711990785 AGGPTTPLS(ph)PTR ddPTM_HeLa_A485_30min_R1 5 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPTT(0.001)PLS(0.999)PTR;AGGPTT(0.001)PLS(0.92)PT(0.08)R;AGGPTTPLS(0.862)PT(0.138)R;AGGPTTPLS(1)PTR;AGGPTTPLS(0.867)PT(0.132)R ;;;; 211.25 1.37E-17 16653870000 3683130 5011980 5037380 3793390 5552050 4636230 5392570 6015340 4243590 4793850 TRUE FALSE FALSE 4502429.562 5598087.463 6900916.485 4000613.29 4999268.408 4878975.834 4240403.366 4540068.433 5095239.588 3598831.419 1.251080986 1.555529229 1.917543692 1.111642315 1.389136591 1.355711137 1.178272298 1.261539623 1.415803908 1 21.77909709 -5.28684262 24.9996598 1.263374056 1.572799236 0.379689272 0.192317721 806.4788187 793664.4859 0.053751491 0.079759197 5.17E-06 5.28684262 0.30942518 AGGPTTPLS(ph)PTR ddPTM_HeLa_A486_30min_R1 6 AGGPTTPLSPTR 12 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPTTPLS(0.999)PT(0.001)R;AGGPT(0.003)T(0.047)PLS(0.923)PT(0.028)R;AGGPTT(0.005)PLS(0.692)PT(0.302)R;AGGPTTPLS(1)PTR;AGGPTT(0.01)PLS(0.99)PT(0.001)R;AGGPTT(0.01)PLS(0.977)PT(0.013)R ;;;;; 222.55 4.77E-23 15175780000 6043930 6302530 5730630 1941230 7321810 5635650 6372850 6729110 5337600 6096400 TRUE FALSE FALSE 5620281.718 5803094.569 7949683.408 4519281.544 6403440.317 4940380.802 4778295.525 5197038.548 5800267.466 4569821.759 1.229868913 1.269873285 1.739604699 0.988940441 1.401245093 1.081088292 1.045619671 1.137251915 1.269254639 1 22.12370646 -5.796377245 1.389350099 1.120776548 1.369656602 0.230225357 0.189408198 0.627646869 2.532836248 0.07274971 0.098386298 1.60E-06 5.796377245 0.248880054 AGGS(ph)PAPGPETPAISPSKR ddPTM_HeLa_A485_30min_R1 1 AGGSPAPGPETPAISPSKR 19 1 P33316;H0YKI0 P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 AGGS(0.951)PAPGPET(0.002)PAIS(0.046)PS(0.002)KR 152.88 6.37E-09 712770000 387110 517980 384160 385230 499950 602320 605440 741370 427060 692840 TRUE FALSE FALSE 473221.284 578553.2552 526276.7702 406274.1394 450173.2226 633856.5438 476082.798 559547.8451 512767.0248 520127.7388 0.909817433 1.112329168 1.011822156 0.781104543 0.865505123 1.218655527 0.915318993 1.075789279 0.985848257 1 18.98850645 AGGS(ph)PAS(ph)YHGSTSPR ddPTM_HeLa_A485_30min_R1 1 AGGSPASYHGSTSPR 15 0 F6PQP6;O95208-3;I3L2B2;O95208-2 F6PQP6 EPN2 2 0 AGGS(1)PAS(0.995)Y(0.002)HGS(0.001)T(0.001)SPR 78.794 0.0049649 559910000 370050 714020 801640 222260 881330 554440 601620 726810 668350 451440 TRUE FALSE FALSE 452366.3458 797518.4279 1098199.995 234401.501 793581.6907 583469.6211 473078.9722 548558.7079 802481.7145 338904.3161 1.334790749 2.35322594 3.240442634 0.691645075 2.341609867 1.721635262 1.395907192 1.618624142 2.367871037 1 18.37051848 -5.260026176 24.9999888 1.645402282 2.31386031 0.201229133 0.649640035 219.7044296 3886600.2 0.175811795 0.284614904 5.50E-06 5.260026176 0.668458028 AGGS(ph)PAS(ph)YHGSTSPR ddPTM_HeLa_A486_30min_R1 2 AGGSPASYHGSTSPR 15 0 F6PQP6;O95208-3;I3L2B2;O95208-2 F6PQP6 EPN2 2 0 AGGS(0.999)PAS(0.84)Y(0.142)HGS(0.017)T(0.002)SPR;AGGS(1)PAS(0.988)Y(0.009)HGS(0.003)T(0.001)SPR ; 126.25 5.32E-05 1252030000 1509670 1694810 1700600 131703 2114550 1186730 1370740 1470220 1697780 660980 TRUE FALSE FALSE 1403849.929 1560507.083 2359117.864 306611.2399 1849323.422 1040323.318 1027766.354 1135483.001 1844944.937 495466.3057 2.833391318 3.149572565 4.761409275 0.618833685 3.732490787 2.099685299 2.074341568 2.291746154 3.723653689 1 18.91842742 -5.246753016 24.99236922 2.325854792 3.538268979 0.259544427 1.042298693 1213.71224 2065419.245 0.270503405 0.465913936 5.67E-06 5.246753016 1.212414187 AGGS(ph)PASYHGS(ph)TSPR ddPTM_HeLa_A485_30min_R1 1 AGGSPASYHGSTSPR 15 0 F6PQP6;O95208-3;I3L2B2;O95208-2 F6PQP6 EPN2 2 0 AGGS(0.763)PAS(0.238)Y(0.003)HGS(0.982)T(0.013)S(0.002)PR 265.93 2.11E-50 659190000 331600 647320 622820 184350 717390 423360 557920 565300 505130 434660 TRUE FALSE FALSE 405363.276 723018.4431 853227.0357 194420.5737 645964.1327 445526.475 438715.8342 426659.2886 606504.9577 326307.2613 1.242274764 2.215759588 2.614796349 0.595820555 1.97961924 1.365358752 1.344486888 1.307538444 1.858692801 1 18.31587157 -5.249125637 24.99779393 1.38964803 2.043425088 0.285539325 0.48553423 1011.802874 2054029.896 0.127777207 0.219332135 5.63E-06 5.249125637 0.653777058 AGGS(ph)PASYHGSTSPR ddPTM_HeLa_A485_30min_R1 1 AGGSPASYHGSTSPR 15 0 F6PQP6;O95208-3;I3L2B2;O95208-2 F6PQP6 EPN2 1 0 AGGS(0.998)PAS(0.002)YHGSTSPR 153.72 2.52E-08 466840000 113780 325600 408020 30649 373130 207550 199200 229010 265440 100100 TRUE FALSE FALSE 139089.9685 363676.0877 558963.5771 32323.27726 335979.8671 218416.9971 156639.2927 172844.9384 318711.3732 75146.9122 1.850907301 4.839534679 7.438277379 0.43013447 4.470973686 2.906533225 2.084440839 2.300093688 4.241177234 1 16.1974262 -5.270234207 24.94869904 2.627587666 4.722569351 0.256484366 1.720315594 882.0396276 2502121.824 0.476569188 0.718875587 5.37E-06 5.270234207 2.094981685 AGGS(ph)PASYHGSTSPR ddPTM_HeLa_A486_30min_R1 4 AGGSPASYHGSTSPR 15 0 F6PQP6;O95208-3;I3L2B2;O95208-2 F6PQP6 EPN2 1 0 AGGS(0.904)PAS(0.096)YHGSTSPR;AGGS(0.972)PAS(0.028)YHGSTSPR;AGGS(0.953)PAS(0.047)YHGSTSPR;AGGS(0.974)PAS(0.026)YHGSTSPR ;;; 125.45 1.96E-05 822160000 598590 850500 965390 37891.2 1177320 423030 420069 480011 796390 173162 TRUE FALSE FALSE 556631.9321 783103.2825 1339214.862 88212.62852 1029649.548 370840.8597 314963.2932 370722.9739 865421.7264 129801.1081 4.288344994 6.033101674 10.31743782 0.679598424 7.932517392 2.856993019 2.426506967 2.856084815 6.667290742 1 16.98594317 -5.943972255 1.116266832 3.298398881 6.245978502 0.158456048 2.740788094 0.927980144 2.458603991 1.243244813 1.528324051 1.14E-06 5.943972255 2.947579621 AGGSAALS(ph)PSK ddPTM_HeLa_A485_30min_R1 5 AGGSAALSPSK 11 0 Q92522 Q92522 H1FX Histone H1x 1 0 AGGSAALS(0.988)PS(0.012)K;AGGSAALS(0.988)PS(0.012)K;AGGSAALS(0.999)PS(0.001)K;AGGSAALS(1)PSK;AGGSAALS(0.998)PS(0.002)K ;;;; 228.02 3.29E-18 33374200000 8037300 7856300 6042060 11638200 10851300 8971600 13321500 15384800 7931200 18509300 TRUE FALSE FALSE 9825169.657 8775025.944 8277269.425 12273965.4 9770906.471 9441339.103 10475252.7 11611653.68 9522919.091 13895272.15 0.707087242 0.631511629 0.595689623 0.88331954 0.703182087 0.679464137 0.753871719 0.835655002 0.685335198 1 23.72809076 -14 0.152796721 2.010733961 0.637265567 0.542852765 0.079600927 104.3813186 0.937644961 31.96399174 0.389405206 1.00E-14 14 -1.373468394 AGGSAALS(ph)PSK ddPTM_HeLa_A486_30min_R1 7 AGGSAALSPSK 11 0 Q92522 Q92522 H1FX Histone H1x 1 0 AGGSAALS(0.997)PS(0.003)K;AGGSAALS(0.995)PS(0.005)K;AGGSAALS(0.989)PS(0.011)K;AGGSAALS(0.999)PS(0.001)K;AGGSAALS(1)PSK;AGGSAALS(0.996)PS(0.004)K;AGGSAALS(1)PSK ;;;;;; 239.48 9.07E-22 36891000000 24361700 25430970 15028150 11757120 25281690 27593250 35739000 32815220 19351470 37489540 TRUE FALSE FALSE 22654070.63 23415727.32 20847452.15 27371169.53 22110624.7 24189075.36 26796724.19 25343910.76 21028871 28101915.17 0.806139742 0.833243115 0.74185165 0.973996589 0.786801347 0.860762522 0.953555088 0.901857066 0.748307397 1 24.74416512 -14 0.116109064 1.436151446 0.778085443 0.256502765 0.076399263 229.0830137 1.739017541 24.19495892 0.810898082 1.00E-14 14 -0.658066003 AGGSAALS(ph)PSKK ddPTM_HeLa_A485_30min_R1 5 AGGSAALSPSKK 12 1 Q92522 Q92522 H1FX Histone H1x 1 0 AGGSAALS(0.85)PS(0.15)KK;AGGSAALS(0.999)PS(0.001)KK;AGGSAALS(0.991)PS(0.009)KK;AGGS(0.015)AALS(0.946)PS(0.038)KK;AGGSAALS(1)PSKK ;;;; 164.63 1.45E-10 13259320000 9984700 8018040 5105510 16671400 11330300 10688400 18165500 21519000 8386090 26961600 TRUE FALSE FALSE 12205762.07 8955680.03 6994250.607 17582116.37 10202215.55 11248028.1 14284292.53 16241431.51 10069101.34 20240569.31 0.603034523 0.442461864 0.345556022 0.868657205 0.504047855 0.555716982 0.705725828 0.802419698 0.497471251 1 24.27074653 -14 0.115810643 2.319973647 0.381631168 0.422336913 0.149132675 152.500473 1.155559783 47.30519202 1.598708518 1.00E-14 14 -1.938342479 AGGSAALS(ph)PSKK ddPTM_HeLa_A486_30min_R1 5 AGGSAALSPSKK 12 1 Q92522 Q92522 H1FX Histone H1x 1 0 AGGSAALS(0.97)PS(0.03)KK;AGGSAALS(0.963)PS(0.037)KK;AGGS(0.001)AALS(0.73)PS(0.269)KK;AGGSAALS(1)PSKK;AGGSAALS(0.971)PS(0.029)KK ;;;; 234.47 3.55E-27 12135460000 8872670 8855980 3630560 5466520 7934670 11133920 14906310 13460530 7174280 17080090 TRUE FALSE FALSE 8250741.652 8154199.892 5036410.062 12726334.82 6939429.701 9760330.152 11176593.58 10395861.16 7796152.367 12803124.29 0.644431895 0.636891411 0.393373519 0.994002287 0.542010649 0.762339717 0.872958297 0.811978461 0.608925774 1 23.60999257 -14 0.044947873 2.301801479 5.10E-12 0.285538611 0.158133006 862.2380499 2.874945267 142.2629018 36.86697555 1.00E-14 14 -2.301801479 AGGSAALSPS(ph)KK ddPTM_HeLa_A486_30min_R1 1 AGGSAALSPSKK 12 1 Q92522 Q92522 H1FX Histone H1x 1 0 AGGS(0.004)AALS(0.184)PS(0.812)KK 46.68 0.035963 6772700000 411830 456970 219750 137450 433670 493050 559690 580620 369160 522370 TRUE FALSE FALSE 382962.8437 420758.0329 304843.0851 319990.5463 379275.0648 432222.504 419649.6422 448425.5008 401159.086 391565.1519 0.978030966 1.074554339 0.778524554 0.817208949 0.968612919 1.103832917 1.071723671 1.145212996 1.024501501 1 18.57889285 -6.100480278 4.445078047 1.077342047 0.91189976 0.43229334 0.084897578 0.227838454 7.556446211 0.030591818 0.030969455 7.93E-07 6.100480278 -0.165442287 AGGSPAPGPETPAIS(ph)PSKR ddPTM_HeLa_A486_30min_R1 1 AGGSPAPGPETPAISPSKR 19 1 P33316;H0YKI0 P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 AGGSPAPGPETPAIS(0.961)PS(0.039)KR 167.59 9.76E-13 671200000 576620 620630 403100 265360 624770 623810 747690 837570 520890 794570 TRUE FALSE FALSE 536201.9157 571449.0185 559191.1154 617771.4906 546405.5209 546850.6646 560610.0537 646873.595 566041.1646 595604.5002 0.900265051 0.959443756 0.938863147 1.037217634 0.917396562 0.918143944 0.941245497 1.086079092 0.95036415 1 19.18399513 -7.160845606 24.93477453 1.013706787 0.946491567 0.30518187 0.046593643 45.73103814 11325.42235 0.021462999 0.012391653 6.90E-08 7.160845606 -0.06721522 AGGVMVMPEGADTVSRPS(ph)PDYPMLPTIPLSAFSDPKK ddPTM_HeLa_A485_30min_R1 2 AGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKK 37 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 AGGVMVMPEGADT(0.002)VS(0.001)RPS(0.997)PDYPMLPTIPLSAFSDPKK;AGGVMVMPEGADT(0.013)VS(0.009)RPS(0.978)PDYPMLPTIPLSAFSDPKK ; 199.1 1.07E-29 645750000 349920 312800 212357 413380 410570 407340 574640 609340 286070 560190 TRUE FALSE FALSE 427758.4968 349379.239 290916.6912 435961.9027 369692.2092 428667.6925 451863.4696 459898.4096 343481.625 420544.9425 1.017152874 0.830777412 0.691761241 1.036659483 0.879078956 1.01931482 1.074471296 1.093577316 0.81675367 1 18.68190046 -5.294516627 24.94595409 0.992750384 0.844985089 0.265522051 0.10804991 790.0953676 595866.5983 0.030766967 0.045638067 5.08E-06 5.294516627 -0.147765296 AGGVMVMPEGADTVSRPS(ph)PDYPMLPTIPLSAFSDPKK ddPTM_HeLa_A486_30min_R1 1 AGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKK 37 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 AGGVMVMPEGADT(0.124)VS(0.124)RPS(0.751)PDY(0.001)PMLPT(0.001)IPLSAFSDPKK 62.024 0.0088208 42475000 35870 25347 18450 25101 36075 41442 45001 39611 26976 48101 TRUE FALSE FALSE 33355.69823 23338.41141 25594.33411 58436.39653 31550.13711 36329.30739 33741.27383 30592.44 29314.3014 36056.19652 0.925103074 0.647278794 0.709845646 1.620703296 0.875026768 1.007574589 0.935796814 0.848465533 0.813017019 1 15.1379596 AGIIASAR ddPTM_HeLa_A485_30min_R1 1 AGIIASAR 8 0 P13639 P13639 EEF2 Elongation factor 2 0 0 130.77 0.0026329 43799000 37424 43355 47198 33600 59864 37695 43896 48798 43096 50434 FALSE FALSE TRUE 45748.83969 48424.99011 64658.50427 35435.48292 53903.72996 39668.65191 34517.261 36830.21399 51744.9719 37861.73197 1.208313442 1.27899564 1.707753473 0.935918171 1.423699529 1.047724176 0.911666192 0.972755658 1.366682643 1 15.20845279 -6.278502493 23.35561202 1.048806676 1.31037266 0.258622021 0.21222416 488.0452908 668022.3285 0.073855334 0.065343216 5.27E-07 6.278502493 0.261565984 AGK(ac)DSGK(ac)AK ddPTM_HeLa_A485_30min_R1 2 AGKDSGKAK 9 2 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 2 ; AGK(1)DSGK(1)AK;AGK(1)DSGK(1)AK 163.16 6.25E-06 1045240000 1599820 1809220 1485630 1810350 2028850 2234900 2820400 3258100 2162900 3469400 FALSE TRUE FALSE 1955694.44 2020792.541 2035226.359 1909244.836 1826850.57 2351915.908 2217798.499 2459045.866 2596974.191 2604542.43 0.750878318 0.775872383 0.781414169 0.733044244 0.701409411 0.903005411 0.851511757 0.94413738 0.997094216 1 21.31259851 -6.927526765 1.018541415 0.99946512 0.751947612 0.856237824 0.039985167 0.201534499 0.395848055 0.032482693 0.016100397 1.18E-07 6.927526765 -0.247517509 AGK(ac)DSGK(ac)AK ddPTM_HeLa_A486_30min_R1 2 AGKDSGKAK 9 2 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 2 ; AGK(1)DSGK(1)AK;AGK(1)DSGK(1)AK 168.83 5.43E-07 1082380000 1906650 2042400 1358100 766670 2313600 2241800 2497200 2452800 1848440 2585000 FALSE TRUE FALSE 1773003.681 1880552.786 1883992.691 1784846.505 2023406.715 1965229.509 1872374.147 1894350.984 2008664.267 1937699.174 0.915004612 0.970508121 0.972283374 0.921116409 1.044231603 1.014207744 0.966287323 0.97762904 1.03662338 1 20.88591318 -1.141382111 0.371197705 1.004319077 3.08E-13 0.392509307 0.032046305 66.84729952 1.024012589 0.026098797 47.19989973 0.072213416 1.141382111 -1.004319077 AGK(ac)DSGK(ac)AK(ac)TK ddPTM_HeLa_A485_30min_R1 1 AGKDSGKAKTK 11 3 P0C0S5;A0A494C189 P0C0S5 H2AFZ Histone H2A.Z 0 3 AGK(1)DSGK(1)AK(1)TK 107.37 0.00040379 0 5736.8 6969.5 6325.8 7259.5 8360.6 8108.1 9290.1 12565 10067 12830 FALSE TRUE FALSE 7012.931368 7784.522398 8665.976659 7656.068103 7528.189308 8532.627578 7305.194242 9483.414049 12087.35456 9631.717119 0.728108112 0.808217507 0.899733303 0.794880914 0.781604071 0.885888515 0.75845191 0.984602634 1.254953235 1 13.23357731 -7.491439863 4.482321765 1.129416331 0.814762086 0.743483057 0.076030398 0.090476029 4.315657953 0.04597184 0.018970897 3.23E-08 7.491439863 -0.314654246 AGK(ac)DSGK(ac)AK(ac)TK ddPTM_HeLa_A486_30min_R1 1 AGKDSGKAKTK 11 3 P0C0S5;A0A494C189 P0C0S5 H2AFZ Histone H2A.Z 0 3 AGK(1)DSGK(1)AK(1)TK 123.84 0.006259 43674000 18002 19566 12178 7313.3 23974 20650 23783 21470 18496 25817 FALSE TRUE FALSE 16740.15276 18015.5189 16893.64774 17025.73199 20966.95737 18102.41295 17832.24185 16581.74969 20099.24817 19352.25516 0.865023359 0.930926073 0.872954991 0.879780256 1.083437418 0.935416199 0.921455495 0.856838108 1.038599791 1 14.24021408 -1 0.266945923 0.970652233 0.274952932 0.190676706 0.066704596 104.5957216 1.455785907 0.081773355 33.40366036 0.1 1 -0.695699301 AGKEPAKPS(ph)PSR ddPTM_HeLa_A485_30min_R1 6 AGKEPAKPSPSR 12 2 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 0 AGKEPAKPS(0.896)PS(0.104)R;AGKEPAKPS(0.812)PS(0.188)R;AGKEPAKPS(0.974)PS(0.026)R;AGKEPAKPS(0.824)PS(0.176)R;AGKEPAKPS(0.805)PS(0.195)R;AGKEPAKPS(0.909)PS(0.091)R ;;;;; 122.33 2.95E-05 2925430000 2313000 2034810 1393320 2849660 2589110 2609390 3623240 3762800 1996910 4067130 TRUE FALSE FALSE 2827518.87 2272763.329 1908767.049 3005329.71 2331329.117 2746013.626 2849105.175 2839967.4 2397671.52 3053269.341 0.926062707 0.744370403 0.625155149 0.984298918 0.76355174 0.89936829 0.933132605 0.930139822 0.785280056 1 21.54192343 -5.839139372 1.206440463 0.904822236 0.782012102 0.169119162 0.10576558 0.815259638 2.508078341 0.044600567 0.05992164 1.45E-06 5.839139372 -0.122810134 AGKEPAKPS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 AGKEPAKPSPSR 12 2 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 0 AGKEPAKPS(0.943)PS(0.057)R;AGKEPAKPS(0.5)PS(0.5)R;AGKEPAKPS(0.99)PS(0.01)R ;; 99.451 0.00050983 944260000 963700 909120 430342 432828 850470 954630 1149360 1149530 674430 1297680 TRUE FALSE FALSE 896149.6066 837078.0202 596981.9474 1007645.458 743796.1223 836857.4566 861777.9713 887807.1131 732890.1354 972732.4815 0.921270363 0.860542889 0.613716473 1.035891653 0.764646125 0.860316143 0.885935226 0.912694014 0.753434422 1 19.89168357 -11.1460106 2.068101064 1.308824416 0.845855419 0.154954917 0.108316626 7694628.369 1763488.599 11134575.02 0.027774847 7.14E-12 11.1460106 -0.462968996 AGKFPSLLTHNENMVAK ddPTM_HeLa_A485_30min_R1 1 AGKFPSLLTHNENMVAK 17 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 132.47 2.54E-06 5667700 15866 18485 17359 14601 34247 14931 25350 25387 18290 37546 FALSE FALSE TRUE 19395.33696 20646.65995 23780.81647 15398.61566 30837.24843 15712.76407 19933.76541 19160.79844 21960.63523 28186.47318 0.688107974 0.732502425 0.843696063 0.546312253 1.094044233 0.557457613 0.707210344 0.679787014 0.779119654 1 14.78271535 -8.035885505 19.21391103 1.000000006 0.73398378 0.231701914 0.146226979 328.5345036 175906.7926 0.132738955 0.034273041 9.21E-09 8.035885505 -0.266016226 AGKLS(ph)PLK ddPTM_HeLa_A486_30min_R1 1 AGKLSPLK 8 1 Q03164-2;Q03164;Q03164-3;E9PR05;P48200;P48200-2;H0YNL8 Q03164-2;P48200 KMT2A;IREB2 Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180;Iron-responsive element-binding protein 2 1 0 AGKLS(1)PLK 68.536 0.0086958 2432900000 9479600 8824000 3469700 4634300 6687200 10351000 13326000 12625000 6490500 14290000 TRUE FALSE FALSE 8815128.993 8124754.104 4813260.762 10788884.6 5848429.02 9073998.861 9991693.852 9750563.102 7053101.766 10711690.99 0.822944669 0.758494071 0.449346491 1.007206483 0.545985599 0.847111709 0.932783989 0.910273001 0.658448958 1 23.35268291 -6.492591384 24.16372594 0.871049085 0.718003788 0.182028829 0.162860099 800.8833163 638958.095 0.055193834 0.048599723 3.22E-07 6.492591384 -0.153045297 AGKLS(ph)PLKVQPK ddPTM_HeLa_A485_30min_R1 2 AGKLSPLKVQPK 12 2 P48200;P48200-2;H0YNL8 P48200 IREB2 Iron-responsive element-binding protein 2 1 0 AGKLS(1)PLKVQPK;AGKLS(1)PLKVQPK ; 91.657 0.00089243 1654690000 2315230 2301100 967950 2104480 2673490 3855090 6191290 7615510 1615760 3139470 TRUE FALSE FALSE 2830244.926 2570193.628 1326034.985 2219442.414 2407307.948 4056936.551 4868470.313 5747794.232 1940028.211 2356857.907 1.200855138 1.090517006 0.562628312 0.94169547 1.021405636 1.721332686 2.065661362 2.438752975 0.82314178 1 21.16843335 -6.23854659 4.788341814 1.731727734 0.939855755 0.305904031 0.469777287 0.207057168 12.98731569 0.159728681 0.153551631 5.77E-07 6.23854659 -0.791871979 AGKLS(ph)PLKVQPK ddPTM_HeLa_A486_30min_R1 2 AGKLSPLKVQPK 12 2 P48200;P48200-2;H0YNL8 P48200 IREB2 Iron-responsive element-binding protein 2 1 0 AGKLS(1)PLKVQPK;AGKLS(1)PLKVQPK ; 120.3 8.91E-05 1378250000 1252120 720320 291567 646320 924140 859700 1447230 1476030 514430 2014320 TRUE FALSE FALSE 1164352.854 663239.2198 404469.5508 1504665.623 808225.7439 753638.9548 1085117.747 1139970.191 559021.2066 1509921.161 0.771134867 0.439254205 0.267874616 0.99651933 0.535276785 0.499124705 0.718658546 0.754986565 0.37023205 1 20.52604179 -11.18246069 2.311981297 2.066707212 0.596202346 0.256773273 0.206807504 16555186.89 2948141.443 92702997.21 0.052774856 6.57E-12 11.18246069 -1.470504866 AGKPVICATQMLESMIK ddPTM_HeLa_A485_30min_R1 4 AGKPVICATQMLESMIK 17 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 224.64 3.52E-34 492156000 600956 589110 460342 630727 691586 750415 967064 998582 577908 868185 FALSE FALSE TRUE 734636.5889 658001.2899 630641.6622 665182.0189 622729.2695 789705.569 760442.8762 753678.1988 693888.8347 651762.4573 1.12715389 1.009572249 0.967594336 1.020589651 0.955454342 1.211646299 1.166748511 1.156369457 1.064634557 1 19.31398673 -6.255182016 24.98775018 1.132582153 1.013269425 0.349131785 0.069745933 505.2987542 2017830.99 0.023017301 0.022490684 5.56E-07 6.255182016 -0.119312727 AGKPVICATQMLESMIK ddPTM_HeLa_A486_30min_R1 4 AGKPVICATQMLESMIK 17 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 208.34 4.23E-19 244893000 327413 325281 226257 151427 542927 347854 409935 385240 304183 428128 FALSE FALSE TRUE 304463.0395 299504.5489 313869.7698 352529.7087 474828.0331 304939.3102 307364.9271 297529.2617 330549.8274 320921.9622 0.948713629 0.933262862 0.978025211 1.098490444 1.479574754 0.9501977 0.957755976 0.927107823 1.030000643 1 18.291863 AGLAALS(ph)PLLR ddPTM_HeLa_A485_30min_R1 2 AGLAALSPLLR 11 0 P49189-3 P49189-3 1 0 AGLAALS(1)PLLR;AGLAALS(1)PLLR ; 107.12 0.00067313 34598000 68490 78849 75137 79671 97957 83400 93358 106704 76392 108315 TRUE FALSE FALSE 83725.36421 88069.70465 102933.303 84023.22499 88204.05713 87766.69504 73411.30064 80534.67669 91723.17369 81314.06389 1.029654161 1.08308084 1.265873308 1.033317251 1.084733107 1.079354429 0.902811852 0.9904151 1.128011187 1 16.31121728 -6.544281733 24.93498068 1.002592517 1.101816764 0.240215975 0.0795601 337.88836 393644.2506 0.031170294 0.024146202 2.86E-07 6.544281733 0.099224247 AGLAALS(ph)PLLR ddPTM_HeLa_A486_30min_R1 2 AGLAALSPLLR 11 0 P49189-3 P49189-3 1 0 AGLAALS(1)PLLR;AGLAALS(1)PLLR ; 124.42 6.52E-05 38532000 74260 74282 64071 35826 89674 81705 85436 83128 69937 92708 TRUE FALSE FALSE 69054.75748 68395.62379 88881.00708 83404.73855 78426.25074 71625.06782 64059.00915 64201.56907 75999.19547 69493.31337 0.993689236 0.984204386 1.278986463 1.200183651 1.12854384 1.030675677 0.921801049 0.923852468 1.093618821 1 16.08458655 -6.413304645 3.780109837 0.978113326 1.122953649 0.310162584 0.09303605 0.307284325 7.85509423 0.0377588 0.032451068 3.86E-07 6.413304645 0.144840323 AGLES(ph)GAEPGDGDS(ph)DTTK ddPTM_HeLa_A485_30min_R1 1 AGLESGAEPGDGDSDTTK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 AGLES(1)GAEPGDGDS(1)DTTK 237 6.77E-45 236380000 671100 535270 411230 1200600 846170 640610 1133900 919650 616230 1672900 TRUE FALSE FALSE 820383.8797 597865.1703 563361.0897 1266185.738 761922.3437 674151.349 891633.0019 694104.3955 739901.7086 1255876.817 0.653235945 0.47605399 0.448579894 1.008208544 0.606685571 0.536797351 0.709968517 0.552685093 0.589151498 1 20.26026353 -10.93600149 2.408507258 1.266342543 0.620090531 0.368439515 0.149195461 42303458.71 19508932.72 63259617.75 0.037982716 1.16E-11 10.93600149 -0.646252012 AGLESGAEPGDGDS(ph)DTTK ddPTM_HeLa_A485_30min_R1 6 AGLESGAEPGDGDSDTTK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(1)DTTK;AGLES(0.058)GAEPGDGDS(0.942)DTTK;AGLESGAEPGDGDS(0.984)DT(0.012)T(0.004)K;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(1)DTTK ;;;;; 399.05 2.69E-146 9619880000 4709380 3727070 2857540 7533880 5130170 4126070 6884210 6015320 3656700 9936270 TRUE FALSE FALSE 5756965.334 4162918.415 3914662.958 7945436.788 4619392.262 4342104.645 5413342.295 4540053.338 4390566.149 7459340.752 0.771779374 0.558081277 0.524800125 1.065166085 0.619276209 0.582103002 0.725713233 0.608640024 0.588599756 1 22.8306167 -10.32618704 5.826453753 1.000018874 0.671066389 0.302440754 0.149632187 7.61E-05 8.80E-06 0.145398131 0.035260055 4.72E-11 10.32618704 -0.328952485 AGLESGAEPGDGDS(ph)DTTK ddPTM_HeLa_A486_30min_R1 7 AGLESGAEPGDGDSDTTK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(1)DTTK;AGLES(0.004)GAEPGDGDS(0.996)DTTK;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(0.999)DT(0.001)TK;AGLESGAEPGDGDS(0.998)DT(0.001)TK ;;;;;; 366.82 1.87E-129 17679600000 5792840 5622230 3101860 3482330 5547200 6896400 8922490 7959130 4862950 9893760 TRUE FALSE FALSE 5386791.83 5176704.019 4302983.263 8107040.227 4851418.45 6045592.285 6689988.63 6147009.846 5284474.421 7416298.098 0.726345106 0.698017252 0.580206352 1.093138399 0.654156344 0.815176548 0.902065767 0.828851506 0.712548815 1 22.8222678 -13.99999998 0.03049332 2.157744905 4.51E-07 0.212230145 0.134737973 2288.957492 5.24084704 291.4772106 116.2028159 1.00E-14 13.99999998 -2.157744454 AGLESGAEPGDGDS(ph)DTTKK ddPTM_HeLa_A485_30min_R1 6 AGLESGAEPGDGDSDTTKK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(0.993)DT(0.004)T(0.004)KK;AGLESGAEPGDGDS(0.999)DT(0.001)TKK;AGLESGAEPGDGDS(0.999)DTTKK;AGLESGAEPGDGDS(0.997)DT(0.001)T(0.002)KK;AGLESGAEPGDGDS(0.986)DT(0.007)T(0.007)KK;AGLESGAEPGDGDS(0.999)DT(0.001)T(0.001)KK ;;;;; 210.32 3.43E-26 11176740000 4151140 2497790 1669120 7946380 3921820 3714820 6903500 6056650 2696260 10731510 TRUE FALSE FALSE 5074546.772 2789884.813 2286596.946 8380470.618 3531349.83 3909322.231 5428510.829 4571247.091 3237374.65 8056342.056 0.629882239 0.346296718 0.283825703 1.040232721 0.438331665 0.485247797 0.673818315 0.567409757 0.401841757 1 22.94169351 -10.6405511 3.010997283 1.037809669 0.542230079 0.315083846 0.203113875 101883890.8 107320623 30109390.54 0.052614815 2.29E-11 10.6405511 -0.49557959 AGLESGAEPGDGDS(ph)DTTKK ddPTM_HeLa_A486_30min_R1 4 AGLESGAEPGDGDSDTTKK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(0.999)DT(0.001)T(0.001)KK;AGLESGAEPGDGDS(0.996)DT(0.002)T(0.002)KK;AGLESGAEPGDGDS(0.998)DT(0.001)T(0.001)KK;AGLESGAEPGDGDS(0.999)DTTKK ;;; 220.69 6.39E-35 12271600000 3798200 3393790 1241690 2939380 2911520 4372070 6597270 5725110 2597040 7610600 TRUE FALSE FALSE 3531965.794 3124853.72 1722505.622 6843025.188 2546330.013 3832688.455 4946563.267 4421627.431 2822153.518 5704856.223 0.619115654 0.547753282 0.301936728 1.19950879 0.446344292 0.671829106 0.867079392 0.77506378 0.494693189 1 22.4437591 -14 0.066700446 2.023113758 0.26599011 0.154339007 0.237664588 658.7200389 3.17263999 108.9761363 14.91129748 1.00E-14 14 -1.757123648 AGLESGAEPGDGDS(ph)DTTKKK ddPTM_HeLa_A485_30min_R1 3 AGLESGAEPGDGDSDTTKKK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(1)DTTKKK;AGLESGAEPGDGDS(0.985)DT(0.007)T(0.007)KKK;AGLESGAEPGDGDS(0.898)DT(0.051)T(0.051)KKK ;; 184.68 2.33E-19 2044890000 809960 898380 382506 1299150 1536780 1655870 3319200 4885900 692390 2070590 TRUE FALSE FALSE 990132.8077 1003437.726 524010.8868 1370119.275 1383772.787 1742568.793 2610025.805 3687625.364 831346.322 1554430.019 0.636974837 0.645534192 0.337108059 0.881428728 0.890212341 1.121033929 1.679088651 2.372332828 0.534823898 1 20.56795424 -6.180696508 1.594677458 1.492051714 0.593582042 0.34894338 0.463341932 0.379089918 1.922771102 0.193390237 0.186821444 6.60E-07 6.180696508 -0.898469672 AGLESGAEPGDGDS(ph)DTTKKK ddPTM_HeLa_A486_30min_R1 1 AGLESGAEPGDGDSDTTKKK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(0.951)DT(0.024)T(0.024)KKK 132.84 1.60E-07 252760000 215080 117190 39991 226070 193310 188850 355510 385110 79660 480780 TRUE FALSE FALSE 200004.0027 107903.4376 55476.5862 526302.3849 169063.2573 165551.6071 266557.6378 297428.8599 86564.99294 360389.5586 0.554966141 0.29940778 0.153935054 1.460370791 0.469112529 0.459368489 0.739637516 0.825298216 0.240198393 1 18.45919769 -14 0.054001332 2.192907315 3.82E-11 0.08879773 0.360231573 1348.91082 5.350081331 238.2113738 47.25291576 1.00E-14 14 -2.192907315 AGLGS(ph)PERPPK ddPTM_HeLa_A485_30min_R1 8 AGLGSPERPPK 11 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK ;;;;;;; 124.51 3.15E-05 31389650000 10775010 10414790 8935220 12013100 13427550 11685470 14873930 14451290 10222900 15994490 TRUE FALSE FALSE 13171873.8 11632709.09 12240729.7 12669345.23 12090655.98 12297303.14 11695993.35 10907088.47 12274542.26 12007358 1.096983516 0.96879839 1.019435725 1.055131798 1.006937244 1.024147289 0.974068846 0.908367059 1.022251711 1 23.51741541 -6.775946982 5.324779632 0.96788811 1.025889765 0.269307207 0.041361055 0.21787556 17.84482471 0.016448212 0.011523351 1.68E-07 6.775946982 0.058001655 AGLGS(ph)PERPPK ddPTM_HeLa_A486_30min_R1 6 AGLGSPERPPK 11 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK;AGLGS(1)PERPPK ;;;;; 150.22 3.15E-07 24749360000 11108610 11495430 7397310 4408220 11948150 11859270 13610290 13415000 9522280 13023630 TRUE FALSE FALSE 10329953.8 10584490.26 10261746.54 10262558.94 10449501.61 10396193.84 10204851.49 10360697.35 10347678.9 9762428.278 1.058133644 1.084206712 1.051146933 1.05123015 1.070379348 1.064918845 1.045318971 1.061282813 1.059949287 1 23.21880861 -14 0.294070013 0.512984678 1.064183351 0.758854228 0.010310432 123.755869 1.160351454 37.02914033 0.010971812 1.00E-14 14 0.551198673 AGLGS(ph)PERPPKT(ph)SPGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 AGLGS(1)PERPPKT(0.603)S(0.402)PGS(0.995)PR;AGLGS(1)PERPPKT(0.509)S(0.509)PGS(0.982)PR ; 94.301 0.00069105 1565660000 509280 436190 341869 703910 656750 542670 807400 857970 417580 919000 TRUE FALSE FALSE 622567.579 487198.6262 468340.5695 742362.8209 591361.664 571083.3621 634892.3941 647551.5123 501384.4757 689910.2129 0.902389278 0.706176858 0.678842784 1.076028166 0.857157428 0.82776476 0.920253654 0.938602589 0.726738735 1 19.39604909 -5.231760454 24.98034952 0.899308988 0.756840371 0.282154928 0.104814968 918.3927777 772997.6614 0.027818733 0.048174894 5.86E-06 5.231760454 -0.142468617 AGLGS(ph)PERPPKT(ph)SPGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 AGLGS(1)PERPPKT(0.5)S(0.5)PGS(1)PR;AGLGS(0.997)PERPPKT(0.504)S(0.504)PGS(0.994)PR;AGLGS(0.999)PERPPKT(0.506)S(0.506)PGS(0.989)PR;AGLGS(1)PERPPKT(0.502)S(0.502)PGS(0.995)PR ;;; 108.57 0.00014249 3534270000 2877950 2798960 1498270 1417970 2857970 3265710 4020410 3762190 2203560 3846450 TRUE FALSE FALSE 2676220.567 2577160.216 2078440.269 3301105.82 2499496.753 2862819.904 3014460.894 2905621.465 2394566.355 2883273.884 0.92818812 0.893831221 0.720861199 1.144915798 0.866895361 0.992905988 1.045499323 1.007750766 0.830502565 1 21.45927646 -5.252977466 24.99839268 0.98243587 0.852247301 0.296348149 0.09624323 829.0636926 2449234.565 0.025602419 0.04343248 5.58E-06 5.252977466 -0.130188569 AGLGS(ph)PERPPKTS(ph)PGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 AGLGS(1)PERPPKT(0.444)S(0.61)PGS(0.946)PR;AGLGS(0.999)PERPPKT(0.467)S(0.597)PGS(0.936)PR ; 95.926 0.0005326 2594800000 999960 867890 628000 1354060 1295020 1118380 1614250 1683770 892250 1812670 TRUE FALSE FALSE 1222397.652 969382.1859 860323.3333 1428028.869 1166083.262 1176936.647 1269352.3 1270822.767 1071316.391 1360804.729 0.898290274 0.712359507 0.632216596 1.049400284 0.856907121 0.864882832 0.932795333 0.93387592 0.787266805 1 20.37602863 -5.25586984 24.99975985 0.910993587 0.744095871 0.413719441 0.092594516 457.7262467 2054571.176 0.024923044 0.041662382 5.55E-06 5.25586984 -0.166897716 AGLGS(ph)PERPPKTS(ph)PGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 AGLGS(1)PERPPKT(0.286)S(0.714)PGS(1)PR 110.6 0.00010911 2288000000 625080 650460 307390 310240 679720 703400 944720 905680 502330 935570 TRUE FALSE FALSE 581265.1199 598915.1807 426419.6402 722254.3987 594463.1795 616621.6596 708341.0638 699476.4349 545872.3689 701297.1825 0.828842799 0.854010533 0.608044137 1.029883503 0.847662295 0.879258715 1.010044075 0.997403743 0.778375249 1 19.41966641 -5.276913243 24.99511297 0.931760478 0.772670273 0.391625858 0.097443046 843.7782442 1362962.871 0.027107973 0.040371431 5.29E-06 5.276913243 -0.159090204 AGLGS(ph)PERPPKTSPGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGS(0.918)PERPPKT(0.036)S(0.046)PGS(1)PR 147.45 1.54E-07 1808200000 602860 628010 477180 846460 852350 818660 1101600 1283400 602130 1260000 TRUE FALSE FALSE 736964.1272 701450.3065 653708.7391 892699.9664 767487.0412 861523.7717 866234.1608 968644.1377 722971.9679 945905.1886 0.779109932 0.741565133 0.691093301 0.943752056 0.811378403 0.910792944 0.915772713 1.024039353 0.764317583 1 19.85133606 -5.263495049 24.99461605 0.90717261 0.737687019 0.522653525 0.075621329 140.7639808 1711535.276 0.020290598 0.031843377 5.45E-06 5.263495049 -0.16948559 AGLGS(ph)PERPPKTSPGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGS(0.602)PERPPKT(0.216)S(0.182)PGS(0.999)PR 116.44 0.00022751 1004300000 663230 637000 381530 293140 659610 698460 900310 845310 511250 966420 TRUE FALSE FALSE 616741.0019 586521.8001 529268.6337 682444.7345 576875.5632 612291.1066 675042.9155 652851.366 555565.5616 724422.1417 0.851355814 0.809640907 0.73060803 0.942053942 0.79632514 0.845213131 0.931836393 0.901202943 0.766908588 1 19.46647112 -14 0.154381459 1.548479579 0.799438036 0.331840128 0.066115024 156.9191591 1.416862437 26.55109911 0.309786441 1.00E-14 14 -0.749041542 AGLGSPERPPKT(ph)SPGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGSPERPPKT(0.922)S(0.077)PGS(1)PR 117.4 4.51E-05 900180000 256670 276890 203680 346370 380880 313550 483550 516660 286990 517860 TRUE FALSE FALSE 313765.356 309269.8769 279029.7078 365291.316 342958.2498 329966.9932 380235.5923 389948.3249 344586.2606 388767.0325 0.807078095 0.795514668 0.71772986 0.939614951 0.882169066 0.848752506 0.978055134 1.003038561 0.886356691 1 18.56854636 -5.813066057 0.649138005 0.970788329 0.76435791 0.589886056 0.058052918 0.625596589 0.566889262 0.040126723 0.070991537 1.54E-06 5.813066057 -0.206430419 AGLGSPERPPKT(ph)SPGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGS(0.001)PERPPKT(0.542)S(0.458)PGS(0.999)PR 62.099 0.015455 669440000 256180 246990 154310 129280 278440 295220 384710 341830 207190 394220 TRUE FALSE FALSE 238223.1049 227417.6129 214062.9646 300970.3734 243515.4589 258798.758 288451.489 264002.7711 225149.396 295504.7461 0.806156612 0.76959039 0.724397721 1.018495904 0.824066152 0.875785453 0.976131493 0.893396044 0.761914653 1 18.17282178 -5.239272282 24.87932457 0.900781187 0.767002448 0.412389552 0.076538982 780.2461698 875710.9246 0.020355023 0.035218462 5.76E-06 5.239272282 -0.133778739 AGLGSPERPPKT(ph)SPGSPR ddPTM_HeLa_A485_30min_R1 4 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 AGLGSPERPPKT(0.499)S(0.499)PGS(0.002)PR;AGLGS(0.004)PERPPKT(0.497)S(0.497)PGS(0.002)PR;AGLGSPERPPKT(0.49)S(0.49)PGS(0.02)PR;AGLGSPERPPKT(0.5)S(0.5)PGSPR ;;; 150.94 2.97E-08 2426370000 725660 1457150 871770 657910 1282800 1788810 1846970 4925370 865060 904100 TRUE FALSE FALSE 887080.5635 1627551.017 1194274 693849.9574 1155079.928 1882469.326 1452349.771 3717415.285 1038669.607 678724.5087 1.306981776 2.397955276 1.759585789 1.022285108 1.701839131 2.773539634 2.1398222 5.477060629 1.530325771 1 19.37246658 -6.272398468 4.284971077 2.850445089 1.644533801 0.121786007 1.168472764 0.355717122 16.44198794 0.401756424 0.371492511 5.34E-07 6.272398468 -1.205911288 AGLGSPERPPKT(ph)SPGSPR ddPTM_HeLa_A486_30min_R1 3 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 AGLGSPERPPKT(0.498)S(0.498)PGS(0.003)PR;AGLGSPERPPKT(0.5)S(0.5)PGSPR;AGLGSPERPPKT(0.5)S(0.5)PGSPR ;; 176.67 5.70E-13 1680900000 1556430 1263710 1001630 510390 1441150 1114600 1370280 1410980 987120 1378720 TRUE FALSE FALSE 1447332.294 1163569.017 1389487.961 1188213.714 1260387.529 977091.9844 1027421.451 1089730.655 1072684.356 1033479.538 1.400446009 1.125875235 1.344475541 1.149721567 1.219557313 0.945439119 0.994138164 1.054428864 1.037934779 1 19.97907839 -6.190070272 5.712600816 1.009327201 1.243408151 0.691476355 0.080702201 0.131544105 7.920849591 0.02574242 0.025655284 6.46E-07 6.190070272 0.23408095 AGLGSPERPPKTS(ph)PGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGS(0.019)PERPPKT(0.118)S(0.862)PGS(1)PR 99.11 0.0013847 1476400000 285920 298830 246510 411590 409360 361490 553610 581370 305620 596690 TRUE FALSE FALSE 349521.9176 333775.569 337704.3071 434074.1195 368602.681 380417.0574 435326.7009 438788.0959 366955.1307 447946.1643 0.780276617 0.745124293 0.753894852 0.969031893 0.822872725 0.849247271 0.97182817 0.979555426 0.819194716 1 18.77296583 -2.274024644 0.203072789 0.989420187 0.188424283 0.484231274 0.068670046 26.92067986 0.512691921 0.130709951 6.206365492 0.005320781 2.274024644 -0.800995903 AGLGSPERPPKTS(ph)PGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGS(0.014)PERPPKT(0.291)S(0.695)PGS(1)PR;AGLGSPERPPKT(0.443)S(0.557)PGS(1)PR ; 148.36 1.43E-07 1947050000 1025980 1069280 637030 586270 1045000 1162680 1556950 1340090 864730 1574750 TRUE FALSE FALSE 954064.1002 984546.3585 883705.0763 1364866.188 913926.3558 1019240.363 1167384.642 1034980.761 939685.4926 1180422.35 0.80823961 0.83406279 0.748634653 1.156252411 0.774236743 0.863453969 0.988955048 0.876788516 0.796058709 1 20.17087171 -1.00011596 0.019976518 1.575243681 0.000154614 0.092896402 0.114845171 8783.03638 13.55298183 396.4538473 715.5160305 0.099973303 1.00011596 -1.575089067 AGLLFIFNFHPSK ddPTM_HeLa_A485_30min_R1 1 AGLLFIFNFHPSK 13 0 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 152.4 1.07E-05 34441000 47303 53872 42180 34787 64172 42448 64405 60755 28366 78496 FALSE FALSE TRUE 57825.38916 60171.86178 57784.13726 36687.32572 57782.81036 44670.51164 50644.34561 45854.74099 34058.79601 58928.39181 0.981282322 1.021101373 0.980582288 0.622574698 0.980559771 0.758047357 0.859421818 0.778143431 0.577969209 1 15.84667527 -5.096004267 9.958114331 0.796168723 1.00110689 0.339881962 0.126439344 0.467809382 45.65770148 0.032734259 0.056805192 8.02E-06 5.096004267 0.204938167 AGLLFIFNFHPSK ddPTM_HeLa_A486_30min_R1 2 AGLLFIFNFHPSK 13 0 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 ; ; 151.98 1.18E-05 45938000 50191 43944 29981 19625.4 47893 43294 48974 44129 28136 48522 FALSE FALSE TRUE 46672.87009 40461.7174 41590.44612 45688.92301 41885.81336 37952.82646 36720.18721 34081.79003 30574.85113 36371.77537 1.283216714 1.112448237 1.143481331 1.256164225 1.151602112 1.043469175 1.009579181 0.937039495 0.840620256 1 15.15053173 -6.591979142 1.345843517 0.919449937 1.191688729 0.785375135 0.060921154 0.195710357 0.72248294 0.034297957 0.023295639 2.56E-07 6.591979142 0.272238792 AGLQFPVGR ddPTM_HeLa_A485_30min_R1 4 AGLQFPVGR 9 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;A0A3B3IS11;Q93077;Q7L7L0;P04908;P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-2;Q71UI9-5;P16104;Q96QV6;Q8IUE6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P0C0S5;P16104;Q96QV6;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFZ;H2AFV;H2AFX;HIST1H2AA;HIST2H2AB;H2AFJ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.Z;Histone H2A.V;Histone H2A;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2A.J 0 0 ;;; ;;; 186.11 3.89E-08 2493000000 1225620 1693670 1793440 1278790 1925500 1719730 1859470 2199900 1617790 1905740 FALSE FALSE TRUE 1498254.941 1891729.974 2456908.087 1348647.06 1733790.459 1809772.404 1462179.044 1660371.076 1942465.614 1430674.091 1.047237069 1.322264788 1.717308018 0.942665467 1.211869615 1.264978807 1.022021055 1.16055158 1.35772754 1 20.44826363 -5.293830461 24.99942785 1.147452672 1.358269917 0.222741005 0.19201785 1022.683942 789305.0259 0.054279885 0.080517142 5.08E-06 5.293830461 0.210817245 AGLQFPVGR ddPTM_HeLa_A486_30min_R1 4 AGLQFPVGR 9 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;A0A3B3IS11;Q93077;Q7L7L0;P04908;P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-2;Q71UI9-5;P16104;Q96QV6;Q8IUE6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P0C0S5;P16104;Q96QV6;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFZ;H2AFV;H2AFX;HIST1H2AA;HIST2H2AB;H2AFJ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.Z;Histone H2A.V;Histone H2A;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2A.J 0 0 ;;; ;;; 176.29 9.19E-08 2176590000 1349710 1651040 1521770 724157 3284430 1378880 1620850 1711390 1582440 1589410 FALSE FALSE TRUE 1255102.299 1520205.577 2111040.098 1685874.093 2872466.163 1208767.805 1215296.186 1321743.856 1719607.173 1191411.391 1.053458368 1.275970323 1.771881749 1.415022641 2.41097759 1.014567944 1.02004748 1.109393335 1.443336187 1 20.18424023 AGLQMKS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 AGLQMKSPEK 10 1 Q9BRQ0 Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 AGLQMKS(1)PEK 58.487 0.015988 648860000 347630 324470 173540 593540 345160 414930 803750 762040 321670 936900 TRUE FALSE FALSE 424959.0942 362413.944 237739.6676 625963.5873 310794.6585 436655.0932 632022.2465 575148.4952 386226.2185 703348.0724 0.604194581 0.515269691 0.338011401 0.889976971 0.44187888 0.620823615 0.898590998 0.817729539 0.549125296 1 19.4238793 -9.826718427 0.069980303 1.801650765 1.03E-10 0.362766187 0.167230209 106.265235 1.556591776 28.14744868 13.1934963 1.49E-10 9.826718427 -1.801650765 AGLQMKS(ph)PEK ddPTM_HeLa_A486_30min_R1 3 AGLQMKSPEK 10 1 Q9BRQ0 Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 AGLQMKS(1)PEK;AGLQMKS(1)PEK;AGLQMKS(1)PEK ;; 83.087 0.0027577 1484440000 1825260 1800070 858160 1386780 1709830 2243280 3348060 3048700 1421700 3842590 TRUE FALSE FALSE 1697318.7 1657425.897 1190462.534 3228493.924 1495367.178 1966526.922 2510339.976 2354577.563 1544934.101 2880380.453 0.589268927 0.575419089 0.413300449 1.120856768 0.519156133 0.682731658 0.871530694 0.817453667 0.536364597 1 21.45782795 -14 0.044879392 2.261185931 8.26E-12 0.210882798 0.194318745 1100.327243 3.663462733 178.1826566 46.26927371 1.00E-14 14 -2.26118593 AGLQS(ph)LEASGR ddPTM_HeLa_A485_30min_R1 2 AGLQSLEASGR 11 0 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AGLQS(1)LEASGR;AGLQS(1)LEASGR ; 150.85 6.11E-07 362550000 177444 275110 284130 171089 340050 255920 270570 283910 268910 231663 TRUE FALSE FALSE 216915.8056 307281.7214 389241.5106 180435.1588 306193.428 269319.5755 212760.5091 214280.6273 322877.7704 173913.6775 1.247261335 1.766863456 2.238130526 1.037498381 1.760605792 1.548581913 1.223368467 1.232109115 1.856540411 1 17.40801187 -6.231894998 0.962391977 1.348243461 1.668730341 0.099806175 0.366080196 1.341406297 2.649683758 0.212815234 0.200404026 5.86E-07 6.231894998 0.32048688 AGLQS(ph)LEASGR ddPTM_HeLa_A486_30min_R1 2 AGLQSLEASGR 11 0 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AGLQS(1)LEASGR;AGLQS(1)LEASGR ; 164.56 5.92E-08 420650000 280800 318660 271760 101232 382880 336210 330450 354380 298550 323280 TRUE FALSE FALSE 261117.3701 293408.2211 376992.75 235673.212 334855.6202 294731.8285 247767.9149 273695.4101 324428.5544 242328.5838 1.077534338 1.210786678 1.555708964 0.972535754 1.38182469 1.216248714 1.022446098 1.129439234 1.338796065 1 17.88660506 -6.541244051 24.28245165 1.131441252 1.246613819 0.095188354 0.170578076 448.2161235 592620.8694 0.063780136 0.049413498 2.88E-07 6.541244051 0.115172567 AGLQS(ph)LEASGRLEDEFDMFALTR ddPTM_HeLa_A485_30min_R1 1 AGLQSLEASGRLEDEFDMFALTR 23 1 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AGLQS(0.68)LEAS(0.32)GRLEDEFDMFALTR 65.155 0.0062707 12087000 6765.8 7572.7 7943.3 8740.3 16286 8209.5 12434 16226 8039.1 14537 TRUE FALSE FALSE 8270.828868 8458.261391 10881.85722 9217.760457 14664.50866 8639.336726 9777.374324 12246.54806 9652.473631 10913.19343 0.757874303 0.775049159 0.997128593 0.844643735 1.343741293 0.791641491 0.895922388 1.122178227 0.884477462 1 13.41378571 -4.752542928 8.996710798 0.987120786 0.765752944 0.254903467 0.149396874 0.188817077 127.2270463 0.037512817 0.091471059 1.77E-05 4.752542928 -0.221367843 AGLQSLEAS(ph)GR ddPTM_HeLa_A485_30min_R1 1 AGLQSLEASGR 11 0 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AGLQSLEAS(1)GR 147.73 7.94E-07 656440000 345640 550290 424270 294790 341660 466370 459370 441390 343370 351400 TRUE FALSE FALSE 422526.4256 614641.6286 581225.1283 310893.6313 307643.1308 490788.4121 361221.8468 333138.4104 412281.2094 263802.447 1.601677431 2.32993149 2.203259048 1.178509277 1.166187555 1.860439194 1.369289219 1.262832905 1.562840732 1 18.00909842 -3.440933719 0.195076506 1.031643178 3.317561089 0.352387483 0.344921179 24.19000788 0.656113493 0.806866411 14.10803886 0.000362298 3.440933719 2.285917911 AGLQSLEAS(ph)GR ddPTM_HeLa_A486_30min_R1 2 AGLQSLEASGR 11 0 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 AGLQSLEAS(1)GR;AGLQSLEAS(1)GR ; 176.87 6.87E-09 1256070000 1037210 1215080 868960 224620 860680 884480 920980 838460 956220 1132770 TRUE FALSE FALSE 964506.9352 1118792.636 1205444.584 522926.7117 752725.4889 775361.8503 690541.0629 647560.9615 1039105.92 849117.0189 1.13589401 1.31759535 1.419644827 0.615847639 0.886480276 0.913138982 0.813246051 0.762628645 1.223748784 1 19.69560386 -5.249873976 24.98064149 0.875865208 1.293699806 0.56350003 0.162364764 515.1590348 1112713.648 0.043206077 0.074022512 5.63E-06 5.249873976 0.417834598 AGLREGS(ph)EEK ddPTM_HeLa_A486_30min_R1 1 AGLREGSEEK 10 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 AGLREGS(1)EEK 99.732 0.00084597 1196900000 180540 187580 118750 149810 248410 264510 329450 329560 162650 393720 TRUE FALSE FALSE 167885.0783 172715.4776 164733.1802 348765.251 217252.1015 231877.4455 247018.1254 254526.3822 176748.633 295129.9493 0.568851378 0.585218403 0.558171682 1.181734527 0.736123535 0.785679143 0.836980883 0.862421394 0.598884096 1 18.17099081 AGLRSFFES(ph)AS(ph)EDIEK ddPTM_HeLa_A486_30min_R1 1 AGLRSFFESASEDIEK 16 1 M0R127;P21817-3;P21817-2;P21817 M0R127 RYR1 Ryanodine receptor 1 2 0 AGLRS(0.552)FFES(0.768)AS(0.68)EDIEK 62.377 0.013045 0 71189 84744 85514 6867 92014 81551 60248 75979 65066 41417 TRUE FALSE FALSE 66199.01872 78028.57681 118627.3109 15986.72304 80472.74612 71490.06677 45173.31316 58680.24031 70705.97327 31045.91362 2.132294109 2.513328413 3.821028184 0.514938076 2.592055982 2.302720662 1.4550486 1.890111563 2.27746473 1 14.92211577 -8.294727115 0.11017122 1.36E-11 3.381518836 0.192447023 0.783718018 27.54839204 1.632795247 28.08280085 18.55601118 5.07E-09 8.294727115 3.381518836 AGLS(ph)PAEPLLSR ddPTM_HeLa_A485_30min_R1 2 AGLSPAEPLLSR 12 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 AGLS(1)PAEPLLSR;AGLS(1)PAEPLLSR ; 145.41 1.92E-07 147616000 279250 339300 358380 265270 454050 356350 404190 444830 351810 425360 TRUE FALSE FALSE 341368.1991 378978.1835 490959.6754 279761.0284 408843.1877 375007.935 317831.5046 335734.745 422415.04 319325.5802 1.069028666 1.186808095 1.53748934 0.876099648 1.280333344 1.174374865 0.995321153 1.051386941 1.322834957 1 18.2846686 -5.27323351 24.99908148 1.108436228 1.256678665 0.166564098 0.167511428 1453.225626 3080283.978 0.04669746 0.069889034 5.33E-06 5.27323351 0.148242436 AGLS(ph)PAEPLLSR ddPTM_HeLa_A486_30min_R1 2 AGLSPAEPLLSR 12 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 AGLS(1)PAEPLLSR;AGLS(1)PAEPLLSR ; 170.95 1.34E-10 285620000 384330 463910 380320 159823 523710 386850 429160 448860 332340 379030 TRUE FALSE FALSE 357390.4517 427148.0821 527590.0893 372076.021 458021.4084 339124.3802 321779.6288 346664.3765 361147.4988 284118.4209 1.257892574 1.503415656 1.856937286 1.309580772 1.612079241 1.193602228 1.132554615 1.220140445 1.271116099 1 18.11613285 -6.275026749 22.29965252 1.175308302 1.516091663 0.514550197 0.167017414 160.7817661 263873.8305 0.058414461 0.051896743 5.31E-07 6.275026749 0.340783362 AGLS(ph)PANCQSDR ddPTM_HeLa_A485_30min_R1 2 AGLSPANCQSDR 12 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 AGLS(1)PANCQSDR;AGLS(1)PANCQSDR ; 180.06 8.42E-13 469040000 356170 335610 390210 402660 508830 395060 423450 421500 395910 526330 TRUE FALSE FALSE 435398.7877 374856.6701 534564.917 424656.2962 458169.0986 415744.7307 332976.4482 318126.4641 475365.5055 395125.6174 1.101924979 0.948702523 1.352898657 1.074737444 1.159553009 1.052183692 0.842710352 0.805127408 1.203074376 1 18.59195186 -6.543277737 7.436209781 0.946073746 1.125283216 0.240756648 0.136670656 0.230747393 56.84720321 0.051480949 0.040442881 2.86E-07 6.543277737 0.179209471 AGLS(ph)PANCQSDR ddPTM_HeLa_A486_30min_R1 4 AGLSPANCQSDR 12 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 AGLS(1)PANCQSDR;AGLS(0.997)PANCQS(0.003)DR;AGLS(1)PANCQSDR;AGLS(1)PANCQSDR ;;; 176.19 4.07E-11 1016550000 735550 919180 758510 300365 1015870 893620 963530 944120 803360 835750 TRUE FALSE FALSE 683991.7434 846340.8292 1052225.386 699264.8996 888450.112 783374.2501 722444.6028 729164.486 872995.8916 626472.7602 1.091814021 1.350961898 1.679602774 1.116193623 1.418178361 1.250452214 1.153193959 1.163920496 1.393509738 1 19.25689226 -6.494908161 6.43865249 1.192351078 1.339727822 0.141032048 0.176932625 0.394498352 57.68426925 0.063913724 0.054249023 3.20E-07 6.494908161 0.147376744 AGLS(ph)PANCQSDRVNLEK ddPTM_HeLa_A485_30min_R1 2 AGLSPANCQSDRVNLEK 17 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 AGLS(0.759)PANCQS(0.241)DRVNLEK;AGLS(0.996)PANCQS(0.004)DRVNLEK ; 124.08 9.86E-06 1109340000 228556 302464 179731 207053 371230 349831 428500 592830 252316 322192 TRUE FALSE FALSE 279397.4937 337834.5337 246220.9761 218363.7811 334269.0377 368147.6102 336947.4745 447437.513 302953.5068 241875.4639 1.155129541 1.396729243 1.017965908 0.902794263 1.381988203 1.522054384 1.393061822 1.849867307 1.252518556 1 17.8839049 -5.940703393 9.002081627 1.45556158 1.131352779 0.243538847 0.234238956 0.393894904 55.50030279 0.07145251 0.081045263 1.15E-06 5.940703393 -0.324208801 AGLS(ph)PANCQSDRVNLEK ddPTM_HeLa_A486_30min_R1 2 AGLSPANCQSDRVNLEK 17 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 AGLS(1)PANCQSDRVNLEK;AGLS(0.893)PANCQS(0.107)DRVNLEK ; 132.76 4.95E-06 903530000 337180 309370 220025 175038 420240 312850 452380 451990 218429 459610 TRUE FALSE FALSE 313545.4232 284854.3945 305224.5725 407497.3099 367529.5806 274253.7478 339189.7392 349081.7439 237362.6016 344520.6644 0.910091776 0.826813669 0.885939811 1.182794973 1.066785301 0.796044406 0.984526544 1.013238914 0.688964774 1 18.39423099 -9.841581036 13.71974708 0.999999885 0.935933651 0.022041423 0.134921097 0 0 0.134041351 0.032509803 1.44E-10 9.841581036 -0.064066235 AGLVIGK ddPTM_HeLa_A485_30min_R1 1 AGLVIGK 7 0 A0A087WTP3;Q92945;M0R0I5;M0QXW7;M0QYH3;Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 A0A087WTP3;Q96AE4;C9JSZ1 KHSRP;FUBP1 Far upstream element-binding protein 2;Far upstream element-binding protein 1 0 0 99.511 0.032996 0 44326 59663 53725 46125 72604 55142 69259 83606 52948 67777 FALSE FALSE TRUE 54186.16578 66640.06885 73600.11318 48644.69196 65375.29083 58029.14985 54461.24886 63101.49741 63574.17793 50881.44124 1.064949507 1.309712682 1.446502131 0.956039978 1.284855327 1.140477715 1.070355861 1.240167257 1.249457098 1 15.63485192 -5.255147228 24.99946176 1.148329828 1.277320542 0.18165932 0.133113454 948.1988808 3767298.07 0.035827968 0.060143772 5.56E-06 5.255147228 0.128990713 AGMSS(ph)NQSIS(ph)SPVLDAVPR ddPTM_HeLa_A485_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.108)S(0.768)NQS(0.172)IS(0.527)S(0.424)PVLDAVPR 110.6 3.04E-06 0 48474 72462 58848 41895 97388 64614 58864 75412 73638 73660 TRUE FALSE FALSE 59256.87407 80935.80056 80618.32407 44183.61777 87691.70877 67997.08913 46287.22553 56917.08876 88416.47115 55297.91761 1.071593229 1.463631979 1.457890777 0.799010517 1.585804901 1.229650086 0.837051873 1.02928087 1.598911405 1 15.75493753 -6.537252067 24.9870447 1.106551092 1.283489161 0.068374306 0.276812922 655.7304122 1139932.475 0.104867533 0.081263664 2.90E-07 6.537252067 0.176938069 AGMSSNQS(ph)IS(ph)SPVLDAVPR ddPTM_HeLa_A485_30min_R1 4 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.003)S(0.002)NQS(0.982)IS(0.784)S(0.229)PVLDAVPR;AGMS(0.012)S(0.057)NQS(0.893)IS(0.609)S(0.429)PVLDAVPR;AGMSSNQS(0.948)IS(0.819)S(0.233)PVLDAVPR;AGMSS(0.001)NQS(0.928)IS(0.928)S(0.143)PVLDAVPR ;;; 159.8 2.77E-13 909650000 1470474 1629750 1654780 1442460 1863730 1507990 1717100 1572230 1558440 1917340 TRUE FALSE FALSE 1797575.868 1820335.086 2266951.983 1521257.937 1678170.497 1586946.025 1350227.558 1186638.127 1871204.613 1439382.424 1.248852173 1.264663966 1.574947662 1.056882391 1.165896199 1.10251869 0.938060334 0.824407821 1.300005184 1 20.45701852 -5.343207573 10.64801705 1.049443103 1.352855634 0.482124432 0.145813169 0.525748594 66.54815754 0.041632781 0.061769297 4.54E-06 5.343207573 0.303412531 AGMSSNQS(ph)IS(ph)SPVLDAVPR ddPTM_HeLa_A486_30min_R1 4 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.002)S(0.016)NQS(0.964)IS(0.616)S(0.402)PVLDAVPR;AGMS(0.017)S(0.031)NQS(0.952)IS(0.925)S(0.076)PVLDAVPR;AGMSS(0.003)NQS(0.995)IS(0.947)S(0.054)PVLDAVPR;AGMS(0.004)S(0.004)NQS(0.988)IS(0.908)S(0.096)PVLDAVPR ;;; 149.53 3.34E-08 752722000 1001086 1178988 899765 343294 1105686 992953 1085852 1073842 936836 1035314 TRUE FALSE FALSE 930915.041 1085560.697 1248178.105 799205.7811 967000.5518 870452.5545 814160.3446 829351.6184 1018041.699 776064.6356 1.199532872 1.398801913 1.608342975 1.02981858 1.246030946 1.121623786 1.04908832 1.068663073 1.311800141 1 19.56581729 -5.276361801 24.99930513 1.123603357 1.401883534 0.503911898 0.129087412 640.8646044 1073629.405 0.036125857 0.053832694 5.29E-06 5.276361801 0.278280177 AGMSSNQS(ph)IS(ph)SPVLDAVPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 AGMS(0.135)S(0.135)NQS(0.729)IS(0.652)S(0.349)PVLDAVPRT(0.823)PS(0.177)R 96.068 0.001116 212510000 114900 133390 110890 77720 145750 128320 169140 178000 93758 165540 TRUE FALSE FALSE 106846.1033 122819.6906 153829.5777 180936.0878 127468.6759 112489.1831 126819.383 137473.2857 101885.0189 124087.7065 0.861053092 0.989781293 1.239684269 1.458130647 1.027246611 0.906529633 1.022014078 1.10787192 0.821072625 1 16.92100067 -5.983840512 24.99539445 0.979784757 1.147549397 0.188139731 0.161578031 440.3914446 681191.2731 0.054122497 0.061352423 1.04E-06 5.983840512 0.167764641 AGMSSNQS(ph)ISS(ph)PVLDAVPR ddPTM_HeLa_A485_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQS(0.958)IS(0.382)S(0.66)PVLDAVPR 161.04 3.51E-12 108290000 221230 261810 260060 246160 278050 245550 281810 269810 237290 343940 TRUE FALSE FALSE 270441.8503 292426.4021 356267.016 259607.0975 250366.3657 258406.6183 221598.9913 203638.6745 284911.9264 258202.0877 1.047403809 1.132548558 1.37979913 1.005441512 0.969652755 1.000792134 0.858238573 0.788679426 1.103445479 1 17.97814114 -5.490320086 14.31609873 0.944776404 1.183105635 0.468349182 0.11112899 3.378810055 1484.500781 0.031916519 0.047004377 3.23E-06 5.490320086 0.238329231 AGMSSNQS(ph)ISS(ph)PVLDAVPR ddPTM_HeLa_A486_30min_R1 2 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQS(0.974)IS(0.331)S(0.695)PVLDAVPR;AGMS(0.017)S(0.04)NQS(0.928)IS(0.308)S(0.707)PVLDAVPR ; 194.24 1.69E-18 614670000 468100 588420 450460 159615 527570 488490 491820 529660 434430 497200 TRUE FALSE FALSE 435288.6073 541791.4562 624890.1757 371591.7865 461397.2512 428225.0704 368761.4341 409067.9804 472086.7422 372697.8838 1.167939573 1.453701456 1.67666682 0.997032188 1.237992678 1.148987126 0.989437961 1.097586003 1.266674062 1 18.5076471 -5.275867095 24.99884201 1.111963906 1.434862518 0.514341582 0.145679753 625.471557 1083750.637 0.041249339 0.061498342 5.30E-06 5.275867095 0.322898612 AGMSSNQS(ph)ISS(ph)PVLDAVPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 AGMS(0.203)S(0.203)NQS(0.591)IS(0.231)S(0.773)PVLDAVPRT(0.952)PS(0.048)R 100.69 0.00062887 151130000 95983 116410 78998 49961 157760 116980 140320 140120 90448 144240 TRUE FALSE FALSE 89255.08736 107185.2476 109588.1412 116311.7329 137972.2697 102548.197 105210.4518 108217.7348 98288.10547 108121.3652 0.825508328 0.991341975 1.013566015 1.075751612 1.276087012 0.948454515 0.973077353 1.00089131 0.9090535 1 16.72229211 -10.07081813 13.45215178 0.999991331 1.00942249 0 0.11174202 0 0 0.113542979 0.027538217 8.50E-11 10.07081813 0.009431159 AGMSSNQS(ph)ISSPVLDAVPR ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMS(0.008)S(0.008)NQS(0.416)IS(0.32)S(0.249)PVLDAVPR 90.793 0.0057029 68845000 79252 88417 65359 30464 90833 75682 87509 82768 67417 84228 TRUE FALSE FALSE 73696.84406 81410.51491 90667.75517 70921.73157 79439.87816 66345.12432 65613.32262 63923.53321 73260.75984 63136.76057 1.16725729 1.289431295 1.436053329 1.123303301 1.258219102 1.050816097 1.039225358 1.012461403 1.160350312 1 15.94619262 -6.100328746 1.577264901 1.047827622 1.27922798 0.554614932 0.088909396 0.28648558 1.433610972 0.036470234 0.037471753 7.94E-07 6.100328746 0.231400358 AGMSSNQS(ph)ISSPVLDAVPRT(ph)PSRER ddPTM_HeLa_A485_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.038)S(0.044)NQS(0.472)IS(0.229)S(0.201)PVLDAVPRT(0.533)PS(0.483)RER 79.949 0.0053301 798700000 172050 318590 340110 222760 561450 372830 495110 748680 311170 307150 TRUE FALSE FALSE 210321.9289 355846.3291 465930.8422 234928.8147 505550.0666 392350.8023 389325.7038 565065.0561 373618.9648 230583.1577 0.912130491 1.543245104 2.020662944 1.018846377 2.192484793 1.701558805 1.688439467 2.450591196 1.620322007 1 17.81492761 -4.314908214 3.233628962 1.756446577 0.838718368 0.226120361 0.434717784 0.386625027 6.603239559 0.105632793 0.82165512 4.84E-05 4.314908214 -0.917728209 AGMSSNQSIS(ph)S(ph)PVLDAVPR ddPTM_HeLa_A485_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.258)S(0.275)NQS(0.484)IS(0.509)S(0.475)PVLDAVPR 64.507 0.015907 44624000 63599 60063 55747 62917 86361 52557 83415 64794 58724 82121 TRUE FALSE FALSE 77746.37814 67086.84537 76370.13513 66353.9964 77762.59561 55308.80325 65592.70381 48903.16991 70509.36815 61649.74603 1.261098109 1.088193378 1.23877453 1.076306079 1.261361167 0.897145679 1.063957405 0.793242034 1.14370898 1 15.91180733 -6.263113008 24.99781305 0.971960106 1.176692989 0.483021253 0.105991291 126.0645335 1882926.836 0.033359833 0.030959228 5.46E-07 6.263113008 0.204732882 AGMSSNQSIS(ph)SPVLDAVPR ddPTM_HeLa_A485_30min_R1 4 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQS(0.002)IS(0.707)S(0.291)PVLDAVPR;AGMSSNQSIS(0.774)S(0.226)PVLDAVPR;AGMSSNQS(0.007)IS(0.717)S(0.276)PVLDAVPR;AGMSSNQS(0.019)IS(0.981)S(0.001)PVLDAVPR ;;; 361.7 1.75E-116 13432880000 2381050 2957880 3345690 2541970 3317990 2585840 2862120 2815150 3025280 3316100 TRUE FALSE FALSE 2910706.358 3303778.336 4583399.957 2680831.384 2987639.265 2721230.584 2250604.681 2124730.049 3632425.946 2489457.298 1.16921321 1.327107855 1.841124152 1.076873818 1.200116695 1.093101933 0.904054342 0.853491261 1.459123621 1 21.24739984 -5.430855689 24.99999956 1.075310012 1.438123235 0.356975373 0.222363806 66.42184554 18041.7491 0.063062761 0.093537175 3.71E-06 5.430855689 0.362813223 AGMSSNQSIS(ph)SPVLDAVPR ddPTM_HeLa_A486_30min_R1 3 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQS(0.009)IS(0.89)S(0.101)PVLDAVPR;AGMSSNQS(0.082)IS(0.584)S(0.334)PVLDAVPR;AGMSS(0.001)NQS(0.008)IS(0.673)S(0.318)PVLDAVPR ;; 246.1 6.71E-45 1481920000 1070040 1232470 1047070 339775 1234950 1102750 1114310 1124390 1069980 1218010 TRUE FALSE FALSE 995035.7217 1134804.589 1452523.546 791013.3713 1080051.056 966703.9169 835497.852 868390.9423 1162726.728 913012.3681 1.089838163 1.242923566 1.590913329 0.866377498 1.182953368 1.058807033 0.915100256 0.951127249 1.273505999 1 19.80027488 -5.278407361 24.99330672 1.03548343 1.301394921 0.372528741 0.161989579 859.3138135 1265740.246 0.045561353 0.067768197 5.27E-06 5.278407361 0.265911491 AGMSSNQSIS(ph)SPVLDAVPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.055)S(0.058)NQS(0.061)IS(0.426)S(0.402)PVLDAVPRT(0.874)PS(0.126)R 54.841 0.022985 1752400000 293150 400790 666780 109430 719200 328190 334560 361420 356240 283710 TRUE FALSE FALSE 272601.6988 369029.9407 924975.073 254758.5703 628991.2297 287701.2546 250849.5494 279132.5557 387119.17 212667.1694 1.28182314 1.735246403 4.349402288 1.19792148 2.95763202 1.352824018 1.179540548 1.312532426 1.820305274 1 17.69823781 -6.292426408 21.94368996 1.342978883 2.32492457 0.237187329 0.870514615 234.3276333 165939.006 0.304466714 0.268579042 5.10E-07 6.292426408 0.981945687 AGMSSNQSIS(ph)SPVLDAVPRTPS(ph)RER ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.028)S(0.032)NQS(0.145)IS(0.714)S(0.082)PVLDAVPRT(0.062)PS(0.938)RER 84.53 0.017353 494810000 293540 332460 398840 141470 611410 329970 470700 465230 261510 338070 TRUE FALSE FALSE 272964.3618 306114.6588 553281.5293 329349.3095 534721.2566 289261.6563 352925.8814 359307.2849 284177.8974 253415.0715 1.077143361 1.207957589 2.183301593 1.299643733 2.11006099 1.141454036 1.39267913 1.417860756 1.12139304 1 17.9511428 -7.652282245 0.894750851 1.000536357 1.539476572 0.186652829 0.357747861 0.937285312 1.529359968 0.337214758 0.12599029 2.23E-08 7.652282245 0.538940215 AGMSSNQSISS(ph)PVLDAVPR ddPTM_HeLa_A485_30min_R1 8 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQS(0.01)IS(0.245)S(0.745)PVLDAVPR;AGMS(0.001)S(0.001)NQS(0.069)IS(0.049)S(0.879)PVLDAVPR;AGMSSNQS(0.085)IS(0.048)S(0.867)PVLDAVPR;AGMSSNQS(0.007)IS(0.217)S(0.776)PVLDAVPR;AGMSSNQS(0.054)IS(0.132)S(0.814)PVLDAVPR;AGMSSNQSIS(0.002)S(0.998)PVLDAVPR;AGMSSNQSIS(0.057)S(0.943)PVLDAVPR;AGMSSNQSIS(0.068)S(0.932)PVLDAVPR ;;;;;;; 255.82 5.37E-57 6139557000 3006910 3478660 3850780 3374850 4057840 3408250 3715520 3565110 3559180 4103600 TRUE FALSE FALSE 3675786.756 3885459.027 5275343.766 3559209.51 3653827.202 3586700.7 2921668.799 2690761.183 4273474.779 3080648.041 1.193186208 1.261247301 1.712413653 1.155344415 1.186057983 1.164268249 0.948394221 0.873439986 1.38719994 1 21.55480244 -5.499953522 24.21601683 1.09116294 1.38579562 0.342886348 0.183677501 587.5799212 620662.935 0.052621722 0.077370743 3.16E-06 5.499953522 0.29463268 AGMSSNQSISS(ph)PVLDAVPR ddPTM_HeLa_A486_30min_R1 11 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQS(0.003)IS(0.045)S(0.952)PVLDAVPR;AGMSSNQS(0.001)IS(0.084)S(0.915)PVLDAVPR;AGMSSNQS(0.004)IS(0.117)S(0.878)PVLDAVPR;AGMSSNQS(0.005)IS(0.214)S(0.781)PVLDAVPR;AGMSSNQS(0.011)IS(0.126)S(0.863)PVLDAVPR;AGMSSNQS(0.003)IS(0.046)S(0.951)PVLDAVPR;AGMSSNQSISS(1)PVLDAVPR;AGMSSNQSIS(0.093)S(0.907)PVLDAVPR;AGMSSNQSIS(0.019)S(0.981)PVLDAVPR;AGMSSNQS(0.003)IS(0.095)S(0.902)PVLDAVPR;AGMSSNQS(0.001)IS(0.264)S(0.735)PVLDAVPR ;;;;;;;;;; 382.55 1.45E-145 18109930000 7676660 8993680 7083340 2346551 8612210 7715320 7887540 8325260 7560000 8321920 TRUE FALSE FALSE 7138565.776 8280988.042 9826198.946 5462889.316 7531986.316 6763482.262 5913994.066 6429780.037 8215306.887 6238057.065 1.144357242 1.327494756 1.575201837 0.875735707 1.207425042 1.084228982 0.948050652 1.030734405 1.316965651 1 22.57266532 -5.265830472 24.99888894 1.069160855 1.346865623 0.41926562 0.152517018 362.6126747 2064387.594 0.042398411 0.065458983 5.42E-06 5.265830472 0.277704768 AGMSSNQSISS(ph)PVLDAVPRT(ph)PS(ph)RER ddPTM_HeLa_A485_30min_R1 2 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 AGMSSNQSIS(0.009)S(0.991)PVLDAVPRT(1)PS(1)RER;AGMSSNQSIS(0.008)S(0.992)PVLDAVPRT(1)PS(1)RER ; 133.94 4.93E-06 232609000 52468 68999 68197 40186 84806 63517 83485 96192 63008 60778 TRUE FALSE FALSE 64139.32559 77067.83284 93425.90821 42381.25942 76362.41687 66842.6519 65647.74774 72600.76118 75653.12766 45627.16314 1.40572679 1.689077899 2.04759406 0.928860278 1.67361746 1.464974969 1.43878653 1.591174121 1.658072132 1 15.47760534 -10.62155278 2.90636467 0.956718109 1.544933472 0.269760603 0.268612849 80371400.85 79359818.7 26278179.6 0.065120606 2.39E-11 10.62155278 0.588215363 AGMSSNQSISS(ph)PVLDAVPRT(ph)PS(ph)RER ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 AGMSSNQSIS(0.001)S(0.999)PVLDAVPRT(1)PS(1)RER 114.92 0.00031109 63533000 15754 20870 19837 5267.7 35143 20539 25752 20501 23746 17304 TRUE FALSE FALSE 14649.72595 19216.18519 27518.41765 12263.47181 30735.03724 18005.10701 19308.57722 15833.36983 25804.3224 12970.96577 1.129424456 1.481476826 2.121539609 0.945455568 2.369525738 1.388108436 1.488599813 1.22067779 1.989390987 1 13.66299828 -10.59179899 3.593205294 0.980507593 1.571117102 0.135222556 0.43278903 144092345.1 425820.865 23236172.48 0.09833244 2.56E-11 10.59179899 0.590609509 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSR ddPTM_HeLa_A485_30min_R1 9 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQSIS(0.003)S(0.997)PVLDAVPRT(0.963)PS(0.037)R;AGMSSNQSIS(0.045)S(0.955)PVLDAVPRT(0.897)PS(0.103)R;AGMSSNQSIS(0.27)S(0.73)PVLDAVPRT(0.966)PS(0.034)R;AGMSSNQSIS(0.213)S(0.787)PVLDAVPRT(0.851)PS(0.149)R;AGMSSNQSIS(0.003)S(0.997)PVLDAVPRT(0.888)PS(0.112)R;AGMSSNQSIS(0.031)S(0.969)PVLDAVPRT(0.876)PS(0.124)R;AGMS(0.022)S(0.024)NQS(0.025)IS(0.152)S(0.777)PVLDAVPRT(0.846)PS(0.154)R;AGMSSNQSIS(0.183)S(0.816)PVLDAVPRT(0.874)PS(0.126)R;AGMSSNQSIS(0.049)S(0.951)PVLDAVPRT(0.888)PS(0.112)R ;;;;;;;; 165.58 2.16E-14 10286480000 1329189 2134692 2039096 1281959 2677190 2211366 2497699 3194120 1896093 1896931 TRUE FALSE FALSE 1624862.507 2384325.66 2793442.464 1351989.174 2410639.563 2327149.704 1964045.204 2410757.062 2276621.473 1424061.012 1.141006245 1.67431426 1.961603078 0.949389923 1.692792333 1.634164326 1.379186136 1.692874843 1.598682538 1 20.44157953 -10.51914289 6.288067932 0.999494306 1.534010763 0.238943385 0.280604269 0.001924497 0.000147168 0.262842714 0.063691843 3.03E-11 10.51914289 0.534516457 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 5 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQSIS(0.002)S(0.998)PVLDAVPRT(0.961)PS(0.039)R;AGMSSNQSIS(0.011)S(0.989)PVLDAVPRT(0.888)PS(0.112)R;AGMSSNQS(0.001)IS(0.044)S(0.955)PVLDAVPRT(0.873)PS(0.127)R;AGMSSNQSIS(0.007)S(0.993)PVLDAVPRT(0.92)PS(0.08)R;AGMS(0.006)S(0.007)NQS(0.008)IS(0.192)S(0.786)PVLDAVPRT(0.857)PS(0.143)R ;;;; 216.7 5.86E-38 6304270000 1496793 1611210 1770330 605179 2525930 1511060 1970150 2067310 1369871 1660590 TRUE FALSE FALSE 1391875.54 1483531.852 2455849.187 1408887.296 2209104.306 1324640.781 1477197.632 1596628.642 1488612.521 1244767.455 1.118181178 1.191814459 1.972938139 1.131847792 1.774712455 1.064167267 1.186725782 1.282672225 1.195896081 1 20.24744482 -6.307848202 24.99989488 1.166111349 1.436949706 0.229438121 0.266278698 706.1886634 380413.56 0.092305631 0.081406203 4.92E-07 6.307848202 0.270838357 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSRER ddPTM_HeLa_A485_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQSIS(0.002)S(0.803)PVLDAVPRT(0.597)PS(0.597)RER 188.8 8.68E-20 622330000 36628 60512 71172 48588 118980 79928 95336 171680 59418 56147 TRUE FALSE FALSE 44775.77223 67588.35202 97501.48451 51242.23941 107133.9334 84112.90649 74966.68478 129575.2108 71342.64759 42150.58621 1.062281127 1.60349732 2.313170309 1.215694585 2.541694982 1.995533492 1.778544298 3.074102224 1.692565964 1 15.36326508 -4.44056973 3.139718349 2.016166158 1.059748571 0.175346898 0.57745749 0.423617147 7.210218717 0.141418007 0.779261049 3.63E-05 4.44056973 -0.956417587 AGMSSNQSISS(ph)PVLDAVPRTPS(ph)RER ddPTM_HeLa_A486_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.02)S(0.023)NQS(0.241)IS(0.115)S(0.577)PVLDAVPRT(0.035)PS(0.99)RER 108.08 0.0014825 498390000 235940 281030 332710 112290 550110 295380 394040 433810 235850 272510 TRUE FALSE FALSE 219401.8244 258760.1593 461544.2223 261416.7948 481110.0742 258939.0188 295447.0243 335040.933 256293.6679 204271.7223 1.07406851 1.266744885 2.259462138 1.279750285 2.355245596 1.267620481 1.446343238 1.640172851 1.254670324 1 17.64012998 -7.955352359 3.187660148 1.001556598 1.58853694 0.17529399 0.403771865 0.371238496 8.305700505 0.380254938 0.101601665 1.11E-08 7.955352359 0.586980342 AGMSSNQSISSPVLDAVPRT(ph)PS(ph)RER ddPTM_HeLa_A485_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQSIS(0.002)S(0.249)PVLDAVPRT(0.9)PS(0.849)RER 118.97 0.00058928 538620000 25467 54380 54584 23654 68777 36857 59666 88521 46906 37684 TRUE FALSE FALSE 31132.04629 60739.26796 74776.89303 24946.15812 61929.32039 38786.77553 46917.87167 66811.08595 56319.60395 28290.07232 1.100458349 2.147017062 2.643220285 0.881799023 2.189083141 1.371038401 1.658457113 2.361644226 1.990790384 1 14.78800824 -4.244778502 23.20453501 1.838574704 1.100456766 0.125773014 0.550624976 2435.431267 3391811.982 0.132575046 3.1914293 5.69E-05 4.244778502 -0.738117938 AGMSSNQSISSPVLDAVPRT(ph)PSR ddPTM_HeLa_A485_30min_R1 4 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQSISSPVLDAVPRT(0.853)PS(0.147)R;AGMSSNQSISSPVLDAVPRT(0.947)PS(0.053)R;AGMSSNQSISSPVLDAVPRT(0.999)PS(0.001)R;AGMSSNQSISSPVLDAVPRT(0.999)PS(0.001)R ;;; 262.19 3.30E-61 3256480000 333397 593210 520714 329884 660077 585519 654480 744252 455125 462680 TRUE FALSE FALSE 407560.0124 662580.7493 713347.7773 347904.7276 594357.4162 616175.8695 514645.0014 561723.0301 546464.4128 347342.391 1.17336675 1.907572374 2.053730831 1.001618969 1.711157151 1.773972557 1.48166482 1.617202635 1.573273021 1 18.40599897 -11.44436943 0.48474638 3.01E-08 1.609042337 0.255899009 0.299846793 170.8904692 9.393915291 181.3808502 0.148099968 3.59E-12 11.44436943 1.609042306 AGMSSNQSISSPVLDAVPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 4 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQSISSPVLDAVPRT(0.999)PS(0.001)R;AGMSSNQSISSPVLDAVPRT(0.998)PS(0.002)R;AGMSSNQSISSPVLDAVPRT(1)PSR;AGMSSNQSISSPVLDAVPRT(0.65)PS(0.35)R ;;; 300.6 2.98E-89 2349190000 446314 527100 559253 205677 846140 465401 619508 640685 439051 514947 TRUE FALSE FALSE 415029.6934 485330.6763 775810.7389 478826.4503 740009.2313 407984.5565 464500.5459 494815.0116 477108.2942 386000.9195 1.075203898 1.257330363 2.009867593 1.240480077 1.917117794 1.056952292 1.203366423 1.281901122 1.236028906 1 18.55824476 -6.316035755 24.99928817 1.176250796 1.500428599 0.268605362 0.283092154 465.897266 213329.5458 0.099277262 0.087554361 4.83E-07 6.316035755 0.324177803 AGMSYYNS(ph)PGLHVQHMGTSHGITRPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AGMSYYNSPGLHVQHMGTSHGITRPSPR 28 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 AGMSYYNS(1)PGLHVQHMGT(0.065)S(0.055)HGIT(0.272)RPS(0.608)PR;AGMS(0.003)YYNS(0.997)PGLHVQHMGT(0.048)S(0.043)HGIT(0.275)RPS(0.634)PR ; 180.2 8.62E-20 613840000 121635 197765 220060 71583 245300 160764 188717 236860 189191 145688 TRUE FALSE FALSE 148692.2861 220891.8964 301469.3515 75493.39803 220877.0707 169181.3545 148396.0713 178769.7136 227159.8983 109370.6628 1.359526242 2.019663142 2.756400517 0.690252725 2.019527587 1.546862295 1.356817884 1.63453077 2.07697286 1 16.73886628 -5.253409402 24.99800254 1.522192948 2.042643173 0.208207797 0.503699975 1054.270836 3282027.075 0.134414169 0.227701823 5.58E-06 5.253409402 0.520450225 AGMSYYNS(ph)PGLHVQHMGTSHGITRPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AGMSYYNSPGLHVQHMGTSHGITRPSPR 28 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 AGMSYYNS(1)PGLHVQHMGTSHGIT(0.002)RPS(0.998)PR 193.58 1.73E-20 395720000 152510 167980 180610 20812 236900 140890 140290 154850 148710 96238 TRUE FALSE FALSE 141819.8366 154668.653 250547.0289 48451.38778 207185.793 123508.4243 105187.9582 119594.0354 161600.3025 72139.3784 1.965914314 2.144025309 3.473096587 0.671635781 2.872020769 1.712080517 1.458121216 1.657819044 2.240112212 1 16.13849937 -9.443474846 0.127452672 9.38E-10 2.769392252 0.175748608 0.715059777 47.09791565 1.57885048 26.35524188 8.686993611 3.60E-10 9.443474846 2.769392252 AGMSYYNSPGLHVQHMGT(ph)SHGITRPSPR ddPTM_HeLa_A485_30min_R1 1 AGMSYYNSPGLHVQHMGTSHGITRPSPR 28 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 AGMSYYNSPGLHVQHMGT(0.286)S(0.286)HGIT(0.286)RPS(0.141)PR 117.23 0.00067244 438190000 92495 170430 199530 58966 171130 118370 129260 148770 126860 70888 TRUE FALSE FALSE 113070.1936 190360.306 273344.4501 62187.16327 154091.6963 124567.6702 101642.545 112283.9242 152319.6384 53216.9262 2.124703581 3.577063156 5.136419363 1.16855985 2.895539208 2.340752822 1.909966477 2.109928781 2.862240442 1 15.69959756 -5.275445538 24.99618049 2.129881292 3.609162298 0.39219945 0.891837691 813.5069511 1451828.616 0.247725589 0.369467986 5.30E-06 5.275445538 1.479281005 AGMSYYNSPGLHVQHMGTSHGIT(ph)RPSPR ddPTM_HeLa_A485_30min_R1 1 AGMSYYNSPGLHVQHMGTSHGITRPSPR 28 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 AGMSYYNSPGLHVQHMGT(0.134)S(0.134)HGIT(0.518)RPS(0.214)PR 171.94 1.76E-13 316570000 85498 153590 159480 39431 158620 100580 106770 121810 95946 68873 TRUE FALSE FALSE 104516.7351 171551.0144 218478.2885 41585.01569 142827.2359 105846.2133 83957.71727 91935.90651 115201.4821 51704.22861 2.021434957 3.317930062 4.225540045 0.804286551 2.762389841 2.047148098 1.623807559 1.778111945 2.228086275 1 15.65799466 -5.261378672 25 1.830956194 3.201264487 0.447252664 0.729178465 5.185983653 2135194.895 0.198308729 0.317212576 5.48E-06 5.261378672 1.370308293 AGMSYYNSPGLHVQHMGTSHGITRPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AGMSYYNSPGLHVQHMGTSHGITRPSPR 28 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 AGMSYYNSPGLHVQHMGT(0.067)S(0.067)HGIT(0.287)RPS(0.58)PR 152.19 1.47E-09 368270000 152350 193340 238960 27621 285020 143860 177900 170480 178970 109220 TRUE FALSE FALSE 141671.0517 178019.0343 331491.7116 64303.08389 249270.1339 126112.0159 133387.5384 131665.4256 194483.2637 81870.6011 1.730426427 2.174395105 4.048971268 0.785423376 3.044684301 1.540382191 1.629248309 1.60821374 2.375495735 1 16.32105787 -6.301920728 24.97427665 1.668592471 2.35336106 0.154022755 0.848521471 1064.188912 656530.0614 0.290070481 0.255820786 4.99E-07 6.301920728 0.684768589 AGMTHIVR ddPTM_HeLa_A485_30min_R1 2 AGMTHIVR 8 0 H7C422;P39023;H7C3M2;F8WCR1 H7C422 RPL3 60S ribosomal protein L3 0 0 ; ; 163.77 4.25E-05 56971000 32510 44512 43574 32014 54417 40661 48656 53058 40482 47442 FALSE FALSE TRUE 39741.73734 49717.2912 59693.83587 33762.84376 48999.05241 42789.94709 38260.24812 40045.44231 48606.36608 35615.58251 1.115852516 1.395942105 1.676059513 0.947979547 1.375775685 1.201438923 1.074255857 1.124379822 1.364749996 1 15.12022097 -5.270789924 24.94936601 1.168399587 1.395950461 0.268664417 0.180917146 890.9078834 2377143.267 0.050287693 0.075765072 5.36E-06 5.270789924 0.227550874 AGMTSS(ph)PDATTGQTFG ddPTM_HeLa_A486_30min_R1 2 AGMTSSPDATTGQTFG 16 0 Q9UQR1;G5E9X2;Q9UQR1-2 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 AGMT(0.083)S(0.442)S(0.472)PDAT(0.003)TGQTFG;AGMT(0.091)S(0.068)S(0.831)PDAT(0.01)TGQTFG ; 106.26 0.00012349 87992000 109464 130872 114152 33193 149353 118893 130650 125200 118557 109056 TRUE FALSE FALSE 101791.1389 120501.2261 158354.7115 77274.98148 130619.7541 104225.1905 97959.98813 96694.6931 128833.6162 81747.66776 1.24518707 1.474063168 1.937115955 0.94528668 1.597840742 1.274962251 1.198321503 1.182843447 1.575991337 1 16.31888995 -5.269820176 24.99931168 1.274154429 1.544316183 0.222759657 0.253374717 996.9297322 2973767.461 0.069354434 0.104840199 5.37E-06 5.269820176 0.270161754 AGNNMLLVGVHGPR ddPTM_HeLa_A485_30min_R1 5 AGNNMLLVGVHGPR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;;; ;;;; 185.59 7.30E-11 924409000 604016 805099 799731 644917 936111 778050 891496 1006462 735033 873103 FALSE FALSE TRUE 738377.2754 899248.3246 1095584.776 680147.1827 842908.502 818787.4949 701020.5967 759625.6164 882547.381 655454.4904 1.126511888 1.371946242 1.671488704 1.037672627 1.285990888 1.249190458 1.069518337 1.158929609 1.346466298 1 19.32213609 -5.290532977 24.99590403 1.175288926 1.388178883 0.292617262 0.160354363 911.6777116 783270.2484 0.04507733 0.06687238 5.12E-06 5.290532977 0.212889957 AGNNMLLVGVHGPR ddPTM_HeLa_A486_30min_R1 5 AGNNMLLVGVHGPR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;;; ;;;; 170.07 5.95E-08 713693000 932280 1044459 848502 408979 1275876 937547 1198749 1132745 836093 1142203 FALSE FALSE TRUE 866931.9863 961692.265 1177064.698 952123.7807 1115843.735 821881.9834 898809.3211 874843.6911 908566.2144 856187.9343 1.012548708 1.123225669 1.374773751 1.112049986 1.303269633 0.959931752 1.04978041 1.021789325 1.061176148 1 19.70756798 -6.272981678 24.91456228 1.021850163 1.188202928 0.420419142 0.097756182 738.1430322 1593309.707 0.034554434 0.030737864 5.33E-07 6.272981678 0.166352764 AGNNMLLVGVHGPRT(ph)PCEEILVK ddPTM_HeLa_A485_30min_R1 1 AGNNMLLVGVHGPRTPCEEILVK 23 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 AGNNMLLVGVHGPRT(1)PCEEILVK 159.54 5.93E-11 167110000 110960 134270 119360 134980 190230 164630 225750 267750 125870 194440 TRUE FALSE FALSE 135642.6692 149971.7085 163516.231 142353.6156 171290.0333 173249.7722 177516.6683 202083.8927 151130.9545 145969.6864 0.929252316 1.027416803 1.12020677 0.975227248 1.173463049 1.186888706 1.216120091 1.384423696 1.035358492 1 17.15530927 -5.816434346 7.0704009 1.189736643 1.021889436 0.306257736 0.109131014 0.239617399 24.80977015 0.033075803 0.037828883 1.53E-06 5.816434346 -0.167847207 AGNNMLLVGVHGPRT(ph)PCEEILVK ddPTM_HeLa_A486_30min_R1 1 AGNNMLLVGVHGPRTPCEEILVK 23 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 AGNNMLLVGVHGPRT(1)PCEEILVK 162.91 3.37E-14 145130000 101120 104700 88819 55163 150250 119720 146480 148580 96479 127620 TRUE FALSE FALSE 94032.01018 96403.19069 123212.0955 128422.2518 131404.244 104950.1636 109829.1547 114751.5775 104841.8774 95663.12133 0.982949426 1.007736203 1.287979043 1.342442626 1.373614431 1.097080695 1.148082492 1.199538295 1.095948741 1 16.54567524 -8.004217436 2.88352248 1.000199576 1.186032547 0.172804874 0.12363058 0.480587059 9.625918987 0.131868254 0.035434409 9.90E-09 8.004217436 0.185832971 AGNS(ph)DS(ph)EEDDANGR ddPTM_HeLa_A485_30min_R1 2 AGNSDSEEDDANGR 14 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 AGNS(1)DS(1)EEDDANGR;AGNS(1)DS(1)EEDDANGR ; 302.11 5.58E-58 2587500000 2515430 2618670 2122240 2822680 2357310 2321750 2872100 2195540 2056530 3335500 TRUE FALSE FALSE 3074978.725 2924900.677 2907344.89 2976875.861 2122607.939 2443313.24 2258452.372 1657080.373 2469256.707 2504021.235 1.228016233 1.168081419 1.161070381 1.188838105 0.847679688 0.975755798 0.901930199 0.6617677 0.98611652 1 21.25581537 -5.75797871 24.98964647 0.882960153 1.183369359 0.701012208 0.092863076 48.44280286 349804.7528 0.027809944 0.034454684 1.75E-06 5.75797871 0.300409206 AGNS(ph)DS(ph)EEDDANGR ddPTM_HeLa_A486_30min_R1 2 AGNSDSEEDDANGR 14 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 AGNS(1)DS(1)EEDDANGR;AGNS(1)DS(1)EEDDANGR ; 287.48 1.96E-49 3225100000 5459800 5813700 3277300 1656240 4255400 5385000 5522500 4847300 4591100 6517700 TRUE FALSE FALSE 5077096.214 5353001.239 4546358.329 3855810.422 3721648.052 4720653.451 4140712.089 3743675.606 4989060.245 4885625.497 1.039190625 1.09566344 0.93055809 0.789215306 0.761754673 0.966233178 0.847529573 0.766263318 1.02117124 1 22.22011185 -4.903289591 4.356525597 0.866057418 1.065731468 0.398657542 0.09008424 0.18530798 6.262615554 0.023356052 0.051926245 1.25E-05 4.903289591 0.19967405 AGNS(ph)DS(ph)EEDDANGRVELILEPK ddPTM_HeLa_A485_30min_R1 1 AGNSDSEEDDANGRVELILEPK 22 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 AGNS(1)DS(1)EEDDANGRVELILEPK 182.09 2.05E-19 137660000 129380 118000 99714 255850 243360 192750 311560 303420 170800 395270 TRUE FALSE FALSE 158160.1346 131799.0735 136602.358 269826.4377 219130.2239 202842.092 244992.6608 229005.7693 205077.9933 296736.4634 0.532998651 0.444162042 0.46034908 0.909313384 0.738467465 0.683576564 0.825623713 0.77174799 0.691111537 1 18.17882269 -3.86596776 0.289897408 0.879700586 5.70E-35 0.550224317 0.117510959 8.497196669 0.491676785 0.143722261 2.766726231 0.000136155 3.86596776 -0.879700586 AGNS(ph)DS(ph)EEDDANGRVELILEPK ddPTM_HeLa_A486_30min_R1 2 AGNSDSEEDDANGRVELILEPK 22 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 AGNS(1)DS(1)EEDDANGRVELILEPK;AGNS(1)DS(1)EEDDANGRVELILEPK ; 203.19 7.87E-27 381790000 538120 564950 335430 536820 719550 753910 1004550 966980 492910 972560 TRUE FALSE FALSE 500400.5669 520181.3045 465317.4791 1249744.089 629297.3295 660900.2494 753200.965 746819.763 535635.8357 729024.6457 0.686397325 0.713530479 0.638274003 1.714268642 0.863204465 0.906554056 1.033162554 1.024409487 0.734729393 1 19.47560806 AGNS(ph)DSEEDDANGR ddPTM_HeLa_A485_30min_R1 2 AGNSDSEEDDANGR 14 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AGNS(0.982)DS(0.018)EEDDANGR;AGNS(0.909)DS(0.091)EEDDANGR ; 286.23 1.54E-49 896280000 692910 711400 586250 702560 634720 637750 712360 627420 569730 810470 TRUE FALSE FALSE 847045.439 794592.0416 803128.2709 740939.0738 571525.0482 671141.6039 560158.4666 473544.2612 684069.5851 608434.7446 1.392171382 1.30596099 1.319990809 1.217779031 0.939336639 1.103062588 0.920654962 0.778299177 1.124310522 1 19.21474301 -5.602424955 2.392497132 0.966244484 1.338528096 0.749847186 0.095040808 0.143280177 1.663040829 0.030449565 0.043121736 2.50E-06 5.602424955 0.372283612 AGNS(ph)DSEEDDANGR ddPTM_HeLa_A486_30min_R1 2 AGNSDSEEDDANGR 14 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AGNS(0.5)DS(0.5)EEDDANGR;AGNS(0.992)DS(0.008)EEDDANGR ; 266.17 4.64E-42 1061340000 784820 803780 473660 203541 625170 735300 750860 654600 664180 878560 TRUE FALSE FALSE 729808.1708 740085.5455 657073.8371 473853.7344 546755.3491 644586.162 562986.8862 505561.8698 721751.6572 658562.8575 1.108183012 1.123788773 0.997738985 0.719526965 0.830225001 0.978776976 0.854871907 0.767674435 1.095949535 1 19.32896162 -4.98590964 5.132087972 0.88019781 1.107844573 0.411877869 0.106217757 0.156225877 12.09600707 0.027970848 0.057227481 1.03E-05 4.98590964 0.227646764 AGNS(ph)DSEEDDANGRVELILEPK ddPTM_HeLa_A486_30min_R1 1 AGNSDSEEDDANGRVELILEPK 22 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AGNS(0.987)DS(0.013)EEDDANGRVELILEPK 82.65 0.0014884 84313000 41524 40702 29431 30385 59686 54706 64667 67493 39185 58279 TRUE FALSE FALSE 38613.38203 37476.62529 40827.47139 70737.81557 52199.62533 47956.92993 48486.63262 52126.31726 42581.58735 43685.55907 0.883893507 0.857872168 0.934575916 1.619249406 1.194894296 1.097775351 1.109900701 1.193216211 0.974729138 1 15.41486883 -5.02537539 24.98310164 1.181496439 0.877217981 0.368951001 0.167389421 719.5814779 708457.5526 0.046131353 0.080338971 9.43E-06 5.02537539 -0.304278458 AGNSDS(ph)EEDDANGRVELILEPK ddPTM_HeLa_A485_30min_R1 1 AGNSDSEEDDANGRVELILEPK 22 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AGNS(0.262)DS(0.738)EEDDANGRVELILEPK 59.661 0.010526 37149000 38927 36168 35174 52547 54722 49972 70333 73441 34240 89327 TRUE FALSE FALSE 47586.17685 40397.53298 48186.32631 55417.50955 49273.68554 52588.45665 55305.77998 55429.4796 41111.65393 67059.42284 0.709612085 0.602413968 0.718561602 0.826394073 0.734776463 0.784206819 0.824727945 0.826572572 0.613063045 1 16.03315245 -14 0.141774289 1.821439018 0.658780042 0.477036669 0.079996645 125.8752317 1.086157492 29.71898327 0.489497618 1.00E-14 14 -1.162658976 AGNWPGS(ph)PQVSGPSPAAR ddPTM_HeLa_A485_30min_R1 1 AGNWPGSPQVSGPSPAAR 18 0 H7C3E5;O60244 H7C3E5 MED14 Mediator of RNA polymerase II transcription subunit 14 1 0 AGNWPGS(1)PQVSGPSPAAR 106.75 4.02E-05 0 49142 62275 52227 56278 83369 54972 83782 91255 62913 84980 TRUE FALSE FALSE 60073.46836 69557.51953 71547.94065 59352.32464 75068.48963 57850.24892 65881.29126 68874.56817 75539.06203 63796.04994 0.941648714 1.090310757 1.121510512 0.930344821 1.176694947 0.906799856 1.032686057 1.079605528 1.184071147 1 15.96117948 -7.363822873 4.471463327 1.102741084 1.031872462 0.077397435 0.091564166 0.550630528 18.25268728 0.051202025 0.023240293 4.33E-08 7.363822873 -0.070868622 AGNWPGS(ph)PQVSGPSPAAR ddPTM_HeLa_A486_30min_R1 1 AGNWPGSPQVSGPSPAAR 18 0 H7C3E5;O60244 H7C3E5 MED14 Mediator of RNA polymerase II transcription subunit 14 1 0 AGNWPGS(0.997)PQVS(0.003)GPSPAAR 80.585 0.00075369 0 46998 52519 39337 14492 51993 53268 60243 59589 38055 50086 TRUE FALSE FALSE 43703.6829 48357.20317 54569.33988 33738.10839 45471.55312 46696.33575 45169.56421 46021.88552 41353.63804 37544.13959 1.164061379 1.288009359 1.45347158 0.898625158 1.21114916 1.243771631 1.20310559 1.225807437 1.101467193 1 15.19630011 -14 0.147359025 0.263472007 1.269767546 0.196550851 0.13054306 234.484036 2.06700542 50.26610532 0.710431808 1.00E-14 14 1.006295539 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGS(ph)AR ddPTM_HeLa_A485_30min_R1 1 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 0 AGPDLPSLPSHALEDEGWAAAAPS(1)PGS(1)AR 86.697 0.0018615 94742000 24732 21436 24828 23438 35809 25224 34906 35223 24352 37407 TRUE FALSE FALSE 30233.54808 23942.75373 34012.91038 24718.35859 32243.73023 26544.68964 27448.04794 26584.50402 29239.22303 28082.12332 1.076611897 0.852597699 1.211194395 0.880216866 1.148194168 0.945252228 0.977420675 0.946670012 1.041204139 1 14.7773644 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGS(ph)AR ddPTM_HeLa_A486_30min_R1 1 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 0 AGPDLPSLPSHALEDEGWAAAAPS(1)PGS(1)AR 118.62 7.28E-05 106540000 39393 53427 40141 10503 57344 39740 46373 53119 48678 46804 TRUE FALSE FALSE 36631.75413 49193.24994 55684.67021 24451.51479 50151.38081 34837.28285 34769.98492 41024.96328 52897.44823 35083.97376 1.04411645 1.402157301 1.58718253 0.696942569 1.429466946 0.992968558 0.991050363 1.169336278 1.507738223 1 15.09852454 -5.220166735 24.99823104 1.122721458 1.350252441 0.151649928 0.250514376 990.1261421 599703.3687 0.066432893 0.115063802 6.02E-06 5.220166735 0.227530983 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGSAR ddPTM_HeLa_A485_30min_R1 4 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(0.857)PGS(0.143)AR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR ;;; 315.62 5.43E-109 10122500000 1361120 1777420 1906900 1339050 2229470 1738110 2026210 2372840 1846580 1944090 TRUE FALSE FALSE 1663896.448 1985273.808 2612341.663 1412198.911 2007496.139 1829114.752 1593293.681 1790897.27 2217171.668 1459464.141 1.140073539 1.360275838 1.789932064 0.967614668 1.375502201 1.25327831 1.091697724 1.227092341 1.519168307 1 20.47700733 -5.283771791 24.95511056 1.218776335 1.423112185 0.185254783 0.214887958 1401.39644 1565971.683 0.060055136 0.08914777 5.20E-06 5.283771791 0.20433585 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGSAR ddPTM_HeLa_A486_30min_R1 4 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGPDLPSLPSHALEDEGWAAAAPS(0.999)PGS(0.001)AR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(1)PGSAR;AGPDLPSLPSHALEDEGWAAAAPS(0.999)PGS(0.001)AR ;;; 333.89 6.07E-127 11235200000 1761050 1971760 1805840 445377 2419730 1722670 1981340 2001120 1612440 1713680 TRUE FALSE FALSE 1637609.489 1815510.557 2505109.61 1036860.164 2116224.9 1510144.49 1485587.776 1545508.66 1752207.597 1284563.374 1.274837445 1.413328913 1.950164282 0.807169335 1.647427401 1.175609177 1.156492397 1.203139286 1.364049165 1 20.29284664 -5.874488728 0.915474958 1.190544053 1.471179777 0.126078946 0.286512625 1.282521107 2.343592782 0.144876495 0.203770797 1.34E-06 5.874488728 0.280635724 AGPDLPSLPSHALEDEGWAAAAPSPGS(ph)AR ddPTM_HeLa_A485_30min_R1 2 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGPDLPSLPSHALEDEGWAAAAPS(0.213)PGS(0.787)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.209)PGS(0.791)AR ; 169.26 2.68E-14 420910000 113749 151362 164013 124981 203962 154349 185781 215630 147726 174200 TRUE FALSE FALSE 139052.0726 169062.4692 224688.2339 131808.3956 183654.8271 162430.475 146087.3717 162746.4044 177373.2532 130775.1459 1.063291283 1.29277217 1.718126424 1.007900963 1.404355742 1.242059214 1.117088195 1.244475036 1.35632235 1 16.99672885 -6.516548509 24.17512692 1.196948503 1.306227719 0.068055445 0.200078196 613.5848346 2343302.614 0.074110233 0.059563652 3.04E-07 6.516548509 0.109279215 AGPDLPSLPSHALEDEGWAAAAPSPGS(ph)AR ddPTM_HeLa_A486_30min_R1 3 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGPDLPSLPSHALEDEGWAAAAPS(0.226)PGS(0.774)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.009)PGS(0.991)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.002)PGS(0.998)AR ;; 263.86 1.37E-63 613273000 306152 375548 328714 77335.1 450438 333493 372619 408341 304134 304608 TRUE FALSE FALSE 284692.3258 345788.2088 456000.8641 180040.0211 393939.8659 292350.0244 279385.785 315370.6683 330496.58 228332.1741 1.246834034 1.514408603 1.997094215 0.788500446 1.725292843 1.28037157 1.223593592 1.381192421 1.447437626 1 17.80077464 -12.87347033 0.167561891 1.42E-09 1.511728371 0.136924684 0.303211449 173.885311 2.299745639 60.63960732 1.164884212 1.34E-13 12.87347033 1.51172837 AGPGSS(ph)PLFSLLPGYR ddPTM_HeLa_A485_30min_R1 2 AGPGSSPLFSLLPGYR 16 0 Q9H0W8-2;Q9H0W8 Q9H0W8-2 SMG9 Protein SMG9 1 0 AGPGS(0.019)S(0.981)PLFSLLPGYR;AGPGS(0.125)S(0.875)PLFSLLPGYR ; 276.1 1.59E-58 573070000 209517 254390 236404 186047 271010 207632 245800 248220 185893 245480 TRUE FALSE FALSE 256123.3338 284138.6976 323859.6772 196210.2765 244027.2928 218503.2905 193282.822 187343.6558 223200.02 184286.3537 1.389811718 1.541832544 1.757371996 1.064703232 1.324174514 1.185672656 1.048817876 1.016589954 1.211158697 1 17.49158972 -5.27235534 24.96812368 1.130358561 1.560888135 0.723348053 0.125014124 368.9766964 843961.2782 0.036187145 0.054273163 5.34E-06 5.27235534 0.430529574 AGPGSS(ph)PLFSLLPGYR ddPTM_HeLa_A486_30min_R1 2 AGPGSSPLFSLLPGYR 16 0 Q9H0W8-2;Q9H0W8 Q9H0W8-2 SMG9 Protein SMG9 1 0 AGPGS(0.024)S(0.976)PLFSLLPGYR;AGPGS(0.015)S(0.985)PLFSLLPGYR ; 266.2 4.98E-51 602810000 370740 436750 387860 155931 466940 377400 396990 410830 328530 352780 TRUE FALSE FALSE 344753.0405 402140.3394 538049.7793 363015.2483 408372.0312 330840.2251 297658.9031 317292.9774 357007.2449 264441.5918 1.303702032 1.520715167 2.034663971 1.372761546 1.544280642 1.251089978 1.125613036 1.199860337 1.35004196 1 18.01258958 -6.230296418 1.979131169 1.180053782 1.58934219 0.464090897 0.19905786 0.317968368 2.448592619 0.081392937 0.076299487 5.88E-07 6.230296418 0.409288407 AGPGTLSVTIEGPSK ddPTM_HeLa_A485_30min_R1 2 AGPGTLSVTIEGPSK 15 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95 O75369-8 FLNB Filamin-B 0 0 ; ; 279.12 2.46E-52 57713000 76558 73650 67377 89007 98412 84601 105593 100764 75032 143960 FALSE FALSE TRUE 93588.06298 82262.72683 92302.55609 93869.22703 88613.75573 89030.57754 83032.19293 76051.47101 90090.23417 108073.4214 0.86596743 0.761174448 0.854072675 0.868569032 0.81994032 0.823797159 0.768294294 0.703701891 0.833602129 1 16.72165224 -6.541782754 24.03835625 0.800899152 0.831836278 0 0.07704824 656.6915312 835038.9026 0.028171994 0.02182634 2.87E-07 6.541782754 0.030937127 AGPLSGK(ac)K ddPTM_HeLa_A485_30min_R1 2 AGPLSGKK 8 1 P17844;P17844-2;J3KTA4;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8;J3KTQ4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 1 ; AGPLSGK(1)K;AGPLSGK(1)K 116.25 0.010915 116029000 54818 67005 75094 59320 112362 129298 221600 355810 316030 457070 FALSE TRUE FALSE 67012.07498 74840.65188 102874.3955 62560.50139 101174.8448 136067.8433 174253.3497 268547.0396 379454.3222 343130.8607 0.195295972 0.218111107 0.299810968 0.182322573 0.294857899 0.396547961 0.507833511 0.782637385 1.105858917 1 18.38839936 -7.207115935 1.186002072 1.073907759 0.237852496 0.966924925 0.059296768 0.077667525 0.194502648 0.049366991 0.019760797 6.21E-08 7.207115935 -0.836055263 down AGPLSGK(ac)K ddPTM_HeLa_A486_30min_R1 2 AGPLSGKK 8 1 P17844;P17844-2;J3KTA4;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8;J3KTQ4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 1 ; AGPLSGK(1)K;AGPLSGK(1)K 141.52 0.001192 217730000 209392 273130 213060 127399 357180 337040 361810 431970 298100 432770 FALSE TRUE FALSE 194714.7021 251486.1841 295562.5379 296591.3104 312379.1538 295459.4316 271281.3112 333619.8608 323939.548 324401.5751 0.600227363 0.775231082 0.91110081 0.914272103 0.962939695 0.910782975 0.836251523 1.028416279 0.998575756 1 18.3074213 -4.146604437 1.074784663 0.9504064 0.350986766 0.822566484 0.051541648 0.912402906 0.739878067 0.017272179 0.660173123 7.14E-05 4.146604437 -0.599419634 AGPLT(ph)PPKPPR ddPTM_HeLa_A485_30min_R1 3 AGPLTPPKPPR 11 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 AGPLT(1)PPKPPR;AGPLT(1)PPKPPR;AGPLT(1)PPKPPR ;; 114.72 0.00045413 1642390000 1195730 1104750 891710 1477940 1471390 1290040 1795290 1813530 1156530 2169350 TRUE FALSE FALSE 1461716.013 1233940.902 1221590.636 1558676.12 1324893.245 1357584.5 1411711.625 1368758.924 1388634.963 1628570.969 0.897545174 0.757683224 0.750099725 0.957082098 0.81353117 0.833604753 0.866840716 0.840466243 0.852670832 1 20.63517516 -14 0.231382557 1.876005305 0.82122892 0.410911262 0.057552128 162.2381891 1.623942382 66.52483061 0.0993705 1.00E-14 14 -1.054776385 AGPLT(ph)PPKPPR ddPTM_HeLa_A486_30min_R1 4 AGPLTPPKPPR 11 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 AGPLT(1)PPKPPR;AGPLT(1)PPKPPR;AGPLT(1)PPKPPR;AGPLT(1)PPKPPR ;;; 101.39 0.001422 1886330000 1817470 1980070 1233310 864280 2040760 2095920 2576750 2447570 1673220 2646760 TRUE FALSE FALSE 1690074.738 1823162.042 1710880.661 2012087.518 1784788.851 1837346.7 1932019.896 1890311.741 1818256.057 1983994.068 0.851854733 0.918935228 0.862341621 1.014160047 0.899593844 0.926084775 0.973803262 0.952780944 0.916462446 1 20.91997628 -1.476129583 0.375750851 0.958497931 2.87E-12 0.380955639 0.040368617 51.24981391 0.997010236 0.030478978 33.75861874 0.033409534 1.476129583 -0.958497931 AGQDMGLEHGFEKPLDSAMS(ph)AEEDTDVR ddPTM_HeLa_A485_30min_R1 2 AGQDMGLEHGFEKPLDSAMSAEEDTDVR 28 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 AGQDMGLEHGFEKPLDSAMS(1)AEEDTDVR;AGQDMGLEHGFEKPLDSAMS(0.998)AEEDT(0.001)DVR ; 247.26 1.77E-50 308410000 239920 198022 200423 294320 279840 258280 345660 329520 239165 425760 TRUE FALSE FALSE 293289.3763 221178.9503 274567.808 310397.9563 251978.147 271803.1414 271806.9172 248704.7033 287163.2217 319625.8675 0.917602128 0.691993273 0.859028745 0.971129023 0.788353424 0.850379049 0.850390863 0.778111938 0.898435486 1 18.28602465 -8.02021792 11.0651073 0.999999875 0.837760659 0.322274808 0.07223579 1.064237613 582.2782042 0.068625611 0.017724487 9.55E-09 8.02021792 -0.162239216 AGQDMGLEHGFEKPLDSAMS(ph)AEEDTDVR ddPTM_HeLa_A486_30min_R1 2 AGQDMGLEHGFEKPLDSAMSAEEDTDVR 28 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 AGQDMGLEHGFEKPLDS(0.072)AMS(0.928)AEEDTDVR;AGQDMGLEHGFEKPLDS(0.001)AMS(0.999)AEEDTDVR ; 232.27 1.99E-39 284170000 170558 192281 159792 66261 201456 229680 246143 240385 194843 242125 TRUE FALSE FALSE 158602.765 177043.9533 221667.7418 154258.9566 176187.51 201344.4168 184555.418 185654.5831 211732.1481 181495.324 0.873866948 0.975473909 1.221341337 0.849933504 0.970755092 1.10936421 1.016860456 1.022916618 1.166598364 1 17.46957285 -6.244063178 23.58372483 1.061687254 0.984492276 0.142309596 0.103590012 929.7355436 1261875.523 0.034750724 0.03465197 5.70E-07 6.244063178 -0.077194978 AGQEPS(ph)PKPGTDVIPAAPR ddPTM_HeLa_A485_30min_R1 1 AGQEPSPKPGTDVIPAAPR 19 1 Q4VC44-2;Q4VC44;Q4VC44-3;I3L0R3;I3L231 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 AGQEPS(0.994)PKPGT(0.006)DVIPAAPR 74.584 0.002046 178900000 103540 130330 116540 141960 162740 132950 173040 181260 122990 219070 TRUE FALSE FALSE 126572.1158 145570.9598 159652.9956 149714.9153 146537.0342 139911.0564 136068.5904 136805.7008 147672.9649 164459.8807 0.769623055 0.885145722 0.970771686 0.910343086 0.891019947 0.850730621 0.827366467 0.831848474 0.897926985 1 17.32737616 -6.198331445 12.88424054 0.867679085 0.891506041 0 0.065691683 8.103917264 1648.378424 0.021831123 0.02183129 6.33E-07 6.198331445 0.023826957 AGQEPS(ph)PKPGTDVIPAAPR ddPTM_HeLa_A486_30min_R1 2 AGQEPSPKPGTDVIPAAPR 19 1 Q4VC44-2;Q4VC44;Q4VC44-3;I3L0R3;I3L231 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 AGQEPS(0.972)PKPGT(0.028)DVIPAAPR;AGQEPS(0.997)PKPGT(0.003)DVIPAAPR ; 116.65 1.49E-05 343850000 286410 301410 158456 189924 301060 345840 455510 406800 249830 511630 TRUE FALSE FALSE 266334.138 277525.1739 219814.4068 442152.6702 263298.2475 303173.777 341536.5801 314180.5204 271485.4656 383514.5178 0.694456469 0.723636684 0.573157981 1.152896826 0.686540497 0.790514473 0.890544071 0.819214152 0.707888366 1 18.54892167 -13.99999207 0.028315285 2.117498568 9.91E-07 0.169615687 0.147732368 3179.021078 6.76851093 385.45778 164.0365314 1.00E-14 13.99999207 -2.117497576 AGQHS(ph)PLR ddPTM_HeLa_A485_30min_R1 4 AGQHSPLR 8 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 AGQHS(1)PLR;AGQHS(1)PLR;AGQHS(1)PLR;AGQHS(1)PLR ;;; 141.08 0.00030251 942630000 981290 1368080 772920 986420 573853 947510 903680 1102990 860660 1140410 TRUE FALSE FALSE 1199574.575 1528065.055 1058855.272 1040305.627 516718.1804 997120.1585 710601.3856 832479.9731 1033386.568 856126.7747 1.401164653 1.784858388 1.236797287 1.215130349 0.603553347 1.164687507 0.830018879 0.972379322 1.207048533 1 19.70746492 -5.131040829 2.158806748 0.970220173 1.584710419 0.586421538 0.19671987 0.201296953 1.825502403 0.055219503 0.121422543 7.40E-06 5.131040829 0.614490246 AGQHS(ph)PLR ddPTM_HeLa_A486_30min_R1 4 AGQHSPLR 8 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 AGQHS(1)PLR;AGQHS(1)PLR;AGQHS(1)PLR;AGQHS(1)PLR ;;; 87.184 0.0032465 418540000 889280 578974 611585 238891 407505 824686 533366 449949 829110 910590 TRUE FALSE FALSE 826946.0642 533093.9917 848407.0908 556150.3209 356391.9231 722944.6261 399912.1854 347505.435 900977.9224 682572.3371 1.211514179 0.78100732 1.242955574 0.814785907 0.522130628 1.059147268 0.585889823 0.509111513 1.31997427 1 19.38062242 -5.393294564 8.859658555 0.794788085 1.048177081 0.140606009 0.26897031 0.584182023 39.05048694 0.073065096 0.108441003 4.04E-06 5.393294564 0.253388996 AGQMVTVWAAGAGVAHS(ph)PPSTLVWK ddPTM_HeLa_A485_30min_R1 1 AGQMVTVWAAGAGVAHSPPSTLVWK 25 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGQMVTVWAAGAGVAHS(0.935)PPS(0.025)T(0.04)LVWK 230.88 7.48E-39 213670000 160900 180990 154880 167730 233020 227740 247380 335910 158180 253950 TRUE FALSE FALSE 196691.6499 202155.2061 212176.5571 176892.6652 209819.7106 239664.1142 194525.2421 253527.5458 189925.2751 190644.9386 1.031717135 1.060375416 1.11294094 0.927864471 1.100578448 1.25712288 1.020353562 1.329841472 0.996225111 1 17.5405287 -5.991798366 24.97658471 1.139918086 1.037528314 0.111629008 0.110723645 338.7611046 1031627.878 0.032050429 0.036279423 1.02E-06 5.991798366 -0.102389773 AGQMVTVWAAGAGVAHS(ph)PPSTLVWK ddPTM_HeLa_A486_30min_R1 2 AGQMVTVWAAGAGVAHSPPSTLVWK 25 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGQMVTVWAAGAGVAHS(0.97)PPS(0.024)T(0.006)LVWK;AGQMVTVWAAGAGVAHS(0.959)PPS(0.016)T(0.025)LVWK ; 255.02 1.48E-61 402350000 171974 216010 186535 81127 261730 237190 280470 266310 224580 258770 TRUE FALSE FALSE 159919.5107 198892.5809 258766.3476 188867.7559 228901.3829 207927.9094 210293.4395 205677.0265 244046.7752 193972.3077 0.824445059 1.025365854 1.334037578 0.973684121 1.180072483 1.071946361 1.084141556 1.060342216 1.258152662 1 17.56549118 -4.360612894 3.884215848 1.119292679 0.820851577 0.411918583 0.106463862 0.203840874 4.955000262 0.025151701 0.13552647 4.36E-05 4.360612894 -0.298441102 AGQTQPNPGILPIQPALT(ph)PR ddPTM_HeLa_A485_30min_R1 2 AGQTQPNPGILPIQPALTPR 20 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 AGQTQPNPGILPIQPALT(1)PR;AGQTQPNPGILPIQPALT(1)PR ; 163.96 1.20E-12 266740000 176625 226450 205468 154311 265460 232350 273620 302720 207909 236920 TRUE FALSE FALSE 215914.6219 252931.3576 281479.1634 162740.6192 239029.8703 244515.4867 215158.8517 228477.4454 249634.4292 177860.2042 1.213956899 1.422079542 1.58258653 0.914991748 1.343919914 1.374762206 1.209707662 1.284590032 1.403542914 1 17.44038422 -10.18492464 4.15583128 0.999894533 1.305383823 0.232928366 0.166356242 112633959.2 31.65562806 134910.2609 0.039967518 6.53E-11 10.18492464 0.30548929 AGQTQPNPGILPIQPALT(ph)PR ddPTM_HeLa_A486_30min_R1 2 AGQTQPNPGILPIQPALTPR 20 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 AGQTQPNPGILPIQPALT(1)PR;AGQTQPNPGILPIQPALT(1)PR ; 130.36 2.24E-06 377540000 238910 260580 276460 96390 351440 227280 297460 300020 210036 298250 TRUE FALSE FALSE 222163.6427 239930.6918 383512.7159 224400.7913 307359.1182 199240.5044 223032.3618 231711.9954 228242.0896 223566.2587 0.993726173 1.07319724 1.715432007 1.00373282 1.374801009 0.891192193 0.997611907 1.036435447 1.020914743 1 17.77034294 -6.26664183 24.98236791 0.992031889 1.237501657 0.268551587 0.200351698 620.3177852 2978780.077 0.069606573 0.06320642 5.41E-07 6.26664183 0.245469768 AGQVVTIWAAGAGATHS(ph)PPTDLVWK ddPTM_HeLa_A485_30min_R1 2 AGQVVTIWAAGAGATHSPPTDLVWK 25 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AGQVVTIWAAGAGATHS(0.976)PPT(0.023)DLVWK;AGQVVTIWAAGAGAT(0.001)HS(0.975)PPT(0.024)DLVWK ; 241.77 2.89E-49 646970000 490080 535940 484150 596900 657740 642080 757770 881830 507400 771090 TRUE FALSE FALSE 599096.6052 598613.5209 663257.2322 629507.1356 592253.0961 675698.316 595866.2491 665559.8098 609230.5259 578871.4539 1.034938934 1.034104406 1.145776368 1.087473102 1.023116777 1.167268331 1.029358496 1.14975407 1.052445274 1 19.14288349 -4.625555268 21.67037865 1.086751092 1.034420865 0.101920481 0.05475714 7.551825169 1564.601794 0.012836221 0.033961531 2.37E-05 4.625555268 -0.052330227 AGQVVTIWAAGAGATHS(ph)PPTDLVWK ddPTM_HeLa_A486_30min_R1 2 AGQVVTIWAAGAGATHSPPTDLVWK 25 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AGQVVTIWAAGAGAT(0.002)HS(0.679)PPT(0.319)DLVWK;AGQVVTIWAAGAGAT(0.001)HS(0.991)PPT(0.008)DLVWK ; 260.37 9.87E-62 514820000 422430 417770 316110 227286 509350 455630 511660 522530 377940 521260 TRUE FALSE FALSE 392819.8384 384664.3837 438516.2577 529133.2944 445462.5735 399419.0031 383637.2562 403561.3257 410700.1435 390733.1032 1.005340564 0.984468376 1.122291032 1.354206465 1.140068681 1.022229752 0.981839658 1.032831164 1.051101481 1 18.57582396 -6.268390195 21.00885743 1.01741724 1.12667174 0.229197755 0.094804153 106.463057 321780.5438 0.037365725 0.033829989 5.39E-07 6.268390195 0.109254499 AGQVVTIWAAGAGATHSPPTDLVWK ddPTM_HeLa_A485_30min_R1 1 AGQVVTIWAAGAGATHSPPTDLVWK 25 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 129.9 9.09E-12 15394000 4681.1 6160.3 5261.3 5382.1 7763.7 6813.3 6716.3 7489.5 6320.2 8544.5 FALSE FALSE TRUE 5722.394545 6880.693498 7207.673811 5676.110495 6990.718768 7170.033853 5281.307638 5652.688382 7588.606168 6414.5134 0.892101113 1.072675832 1.123650909 0.884885593 1.089828383 1.117782972 0.823337221 0.881234168 1.183036919 1 12.64712411 -7.768369694 24.99994 1.091518368 0.992288316 0.120557406 0.113217877 419.2916058 1512457.725 0.103040294 0.02891103 1.70E-08 7.768369694 -0.099230053 AGRPSKPPS(ph)PK ddPTM_HeLa_A486_30min_R1 2 AGRPSKPPSPK 11 2 B9A071;Q9P2M4-2;Q9P2M4 B9A071 TBC1D14 TBC1 domain family member 14 1 0 AGRPS(0.004)KPPS(0.996)PK;AGRPSKPPS(1)PK ; 62.69 0.010992 1103510000 855290 793530 353820 732500 693710 1114940 1482450 1306620 608970 1994080 TRUE FALSE FALSE 795338.5877 730647.7928 490828.5796 1705297.019 606698.4232 977390.0387 1111525.33 1009131.149 661756.0099 1494749.389 0.532088251 0.488809561 0.328368477 1.140858147 0.405886383 0.653882213 0.743619859 0.675117285 0.442720375 1 20.51147219 -14 0.262472863 3.500344413 0.578781815 0.222149318 0.219243435 315.8031293 3.099558629 427.5937478 0.28467686 1.00E-14 14 -2.921562599 AGS(ph)ISTLDSLDFAR ddPTM_HeLa_A485_30min_R1 2 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 AGS(0.966)IS(0.034)TLDSLDFAR;AGS(0.854)IS(0.146)TLDSLDFAR ; 223.03 8.60E-28 159781000 138428 137864 124503 191823 224550 150435 208029 205828 163635 276281 TRUE FALSE FALSE 169220.831 153985.9955 170561.8407 202301.8048 202193.0136 158311.544 163581.9047 155348.3603 196475.0436 207409.2313 0.815878975 0.74242595 0.822344501 0.975375124 0.9748506 0.763281089 0.788691534 0.748994436 0.947282058 1 17.66212058 -7.945770828 6.458224101 0.999659713 0.832407577 0.355700973 0.079309975 0.21195574 17.38885307 0.085196451 0.02208986 1.13E-08 7.945770828 -0.167252136 AGS(ph)ISTLDSLDFAR ddPTM_HeLa_A486_30min_R1 3 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 AGS(0.987)IS(0.013)TLDSLDFAR;AGS(0.995)IS(0.005)TLDSLDFAR;AGS(0.999)IS(0.001)TLDSLDFAR ;; 198.29 9.72E-22 220591000 223993 213927.1 156361 85425.1 229723 240887.5 249676.8 244208 166334.6 258108 TRUE FALSE FALSE 208292.2474 196974.7375 216908.1667 198873.9499 200908.9993 211169.2494 187205.0238 188607.1694 180752.6171 193476.0768 1.076578825 1.018083169 1.121111045 1.027899435 1.038417786 1.091448891 0.96758745 0.974834577 0.934237556 1 17.56179566 -6.77374186 24.99860088 0.967067741 1.060278584 0.664769574 0.032353644 134.6633061 273633.0258 0.012946666 0.00880136 1.68E-07 6.77374186 0.093210843 AGS(ph)IVLK ddPTM_HeLa_A485_30min_R1 1 AGSIVLK 7 0 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 1 0 AGS(1)IVLK 67.563 0.023197 67742000 85862 83509 62438 90462 116020 75601 104130 101720 62437 113720 TRUE FALSE FALSE 104961.7057 93274.65112 85536.41446 95403.71 104468.6414 79559.35146 81881.77484 76773.01051 74967.53319 85371.69686 1.229467254 1.092571128 1.001929417 1.117509825 1.223691753 0.931917185 0.959120854 0.899279426 0.878130996 1 16.38147023 -6.283334001 23.79752404 0.928984053 1.122639907 0.679489138 0.068230145 280.1926483 304543.3417 0.025111804 0.0221702 5.21E-07 6.283334001 0.193655854 AGS(ph)IVLK ddPTM_HeLa_A486_30min_R1 1 AGSIVLK 7 0 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 1 0 AGS(1)IVLK 94.692 0.0043784 0 104120 123830 67781 69407 118910 130880 180800 163350 86369 164260 TRUE FALSE FALSE 96821.72568 114017.2598 94027.61844 161583.0036 103995.199 114733.3563 135561.9277 126158.7709 93855.53446 123128.2268 0.786348737 0.926004238 0.763656075 1.312314875 0.844608923 0.931820097 1.100981726 1.024612911 0.762258475 1 16.90980201 AGS(ph)LKDPEIAELFFK ddPTM_HeLa_A485_30min_R1 2 AGSLKDPEIAELFFK 15 1 Q7L7X3-3;Q7L7X3;J3QS76 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 AGS(1)LKDPEIAELFFK;AGS(1)LKDPEIAELFFK ; 137.05 3.61E-06 44277000 131214 55919 33436 214747 66042 77812 160305 108222 71474 356400 TRUE FALSE FALSE 160402.1016 62458.24062 45805.36779 226478.0848 59466.62659 81886.116 126054.5272 81680.38481 85818.1762 267556.0391 0.599508433 0.233439846 0.171199155 0.846469718 0.222258585 0.306052206 0.471133179 0.305283279 0.320748418 1 18.02948157 -10.3915901 3.070845451 1.008312251 0.381885717 0.472427012 0.194531567 50214366.79 63239717.76 3713021.336 0.048584769 4.06E-11 10.3915901 -0.626426534 AGS(ph)LKDPEIAELFFK ddPTM_HeLa_A486_30min_R1 1 AGSLKDPEIAELFFK 15 1 Q7L7X3-3;Q7L7X3;J3QS76 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 AGS(1)LKDPEIAELFFK 135.18 5.13E-06 39886000 70307 62195 16855 47565 38351 106130 123090 110190 55965 155580 TRUE FALSE FALSE 65378.84237 57266.44169 23381.70739 110733.7238 33540.65997 93036.75965 92291.58009 85102.14243 60816.09126 116621.7553 0.560605885 0.491044244 0.200491815 0.949511723 0.287602085 0.797765043 0.79137533 0.729727847 0.521481529 1 16.83147742 -10.71913586 0.073313914 1.907146553 7.10E-14 0.29301273 0.212821344 157.3161026 1.760456549 37.79975208 12.72814721 1.91E-11 10.71913586 -1.907146553 AGS(ph)PAPSNR ddPTM_HeLa_A485_30min_R1 3 AGSPAPSNR 9 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 AGS(1)PAPSNR;AGS(0.953)PAPS(0.047)NR;AGS(0.997)PAPS(0.003)NR ;; 96.015 0.0025828 383180000 578047 496262 255189 1281160 275278 786310 420261 563394 530769 1042185 TRUE FALSE FALSE 706631.5609 554295.524 349594.0304 1351146.527 247870.3558 827479.9757 330468.8041 425220.7381 637289.4698 782387.4595 0.903173424 0.70846678 0.446829798 1.7269532 0.316812792 1.057634508 0.422385098 0.54349125 0.814544587 1 19.57752372 -6.756690986 24.99890717 0.657062855 0.849030602 0.037864723 0.386309892 404.4428171 2129287.673 0.146062493 0.109368157 1.75E-07 6.756690986 0.191967747 AGS(ph)PDVLR ddPTM_HeLa_A485_30min_R1 4 AGSPDVLR 8 0 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 1 0 AGS(1)PDVLR;AGS(1)PDVLR;AGS(1)PDVLR;AGS(1)PDVLR ;;; 144.77 0.00034352 2415590000 3190920 3586070 2704660 3917030 3627060 3447260 4390160 4867130 2920780 5447440 TRUE FALSE FALSE 3900729.145 4005429.692 3705226.284 4131007.43 3265937.171 3627753.203 3452166.452 3673458.736 3506953.755 4089493.461 0.953841639 0.979443965 0.906035508 1.010151372 0.798616553 0.887091088 0.844155024 0.898267419 0.857552112 1 21.96349073 -5.75088538 24.99964709 0.874328 0.959564057 0.347628673 0.054134896 219.0002736 518751.4643 0.014886506 0.019008426 1.77E-06 5.75088538 0.085236057 AGS(ph)PDVLR ddPTM_HeLa_A486_30min_R1 4 AGSPDVLR 8 0 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 1 0 AGS(1)PDVLR;AGS(1)PDVLR;AGS(1)PDVLR;AGS(1)PDVLR ;;; 147.2 0.00029539 2600900000 2090270 2475750 1778670 932630 2428540 2549240 3151690 2757630 2132280 3268790 TRUE FALSE FALSE 1943752.867 2279562.553 2467418.658 2171209.773 2123929.868 2234740.688 2363103.827 2129777.848 2317107.747 2450263.708 0.793283132 0.930333558 1.007001267 0.886112693 0.86681685 0.912040888 0.964428367 0.869203523 0.945656478 1 21.2245056 -14 0.181980844 1.367196112 0.892661377 0.225469153 0.055187476 235.0181125 2.269760439 31.21983683 0.172714435 1.00E-14 14 -0.474534735 AGS(ph)PGEEQAHSCSTLSLLSEK ddPTM_HeLa_A485_30min_R1 1 AGSPGEEQAHSCSTLSLLSEK 21 0 A0A0C4DGC7;Q9NZ71-5;Q9NZ71-9;Q9NZ71-8;Q9NZ71-4;Q9NZ71;Q9NZ71-7;Q9NZ71-6;Q9NZ71-2 A0A0C4DGC7 RTEL1 Regulator of telomere elongation helicase 1 1 0 AGS(1)PGEEQAHSCSTLSLLSEK 200.52 1.40E-26 354730000 130280 128120 105940 162390 181860 135530 215270 233850 128450 243130 TRUE FALSE FALSE 159260.3365 143102.5195 145131.6145 171260.9545 163753.3799 142626.1412 169275.8059 176497.9208 154228.7368 182522.1655 0.872553403 0.784028171 0.795145149 0.938302228 0.897169828 0.781418196 0.927426022 0.966994449 0.844986341 1 17.47771215 -13.99999999 0.049331522 1.583974169 0.578308729 0.366853973 0.059180052 608.7766095 2.217593227 46.45324495 10.57414733 1.00E-14 13.99999999 -1.005665439 AGS(ph)PINLSQHSLVIK ddPTM_HeLa_A486_30min_R1 1 AGSPINLSQHSLVIK 15 0 P48552 P48552 NRIP1 Nuclear receptor-interacting protein 1 1 0 AGS(0.95)PINLS(0.05)QHSLVIK 78.285 0.0040236 126870000 269750 300280 216570 66542 391780 275390 358140 376040 244600 256440 TRUE FALSE FALSE 250841.918 276484.7192 300431.7039 154913.1388 342639.2992 241415.1818 268529.584 290423.9009 265802.1249 192225.7549 1.304933973 1.438333377 1.562910777 0.805891692 1.782483827 1.25589405 1.396949041 1.510848019 1.382760209 1 17.55244212 -9.597932837 6.143598319 0.999999999 1.384597814 0.188304285 0.238097272 2.69E-09 1.05E-09 0.216952419 0.05261869 2.52E-10 9.597932837 0.384597815 AGS(ph)PLCNSNLQDSEEDIEPSYSLFR ddPTM_HeLa_A485_30min_R1 2 AGSPLCNSNLQDSEEDIEPSYSLFR 25 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AGS(0.998)PLCNS(0.002)NLQDSEEDIEPSYSLFR;AGS(1)PLCNSNLQDSEEDIEPSYSLFR ; 157.1 6.77E-10 181256000 102614 91752 93737 146052 143641 110385 159734 137220 95874 191882 TRUE FALSE FALSE 125440.1303 102481.5983 128414.217 154030.4509 129339.5977 116164.5879 125605.526 103566.5798 115115.0324 144049.3487 0.870813589 0.711433958 0.891459893 1.069289464 0.897883946 0.806422167 0.871961776 0.718965971 0.799136084 1 17.13620361 -6.25691179 23.98665537 0.823774109 0.888601439 0.041639976 0.104746221 657.6453052 3484135.18 0.037233075 0.035980493 5.53E-07 6.25691179 0.064827331 AGS(ph)PLCNSNLQDSEEDIEPSYSLFR ddPTM_HeLa_A486_30min_R1 2 AGSPLCNSNLQDSEEDIEPSYSLFR 25 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AGS(1)PLCNSNLQDSEEDIEPSYSLFR;AGS(0.998)PLCNS(0.002)NLQDSEEDIEPSYSLFR ; 177.79 2.73E-15 187109000 175420 192652 137362 95852 226531 212601 257372 251672 167314 256701 TRUE FALSE FALSE 163123.9639 177385.5539 190552.2451 223148.3001 198117.3697 186372.4502 192974.8034 194371.7796 181816.9122 192421.3988 0.847743364 0.921859809 0.990286144 1.159685469 1.029601546 0.968564055 1.002876004 1.010135987 0.944889256 1 17.55390972 -4.615689282 2.669822254 1.018183245 0.856108879 0.499883306 0.054019243 0.248334613 3.328438628 0.01551619 0.062810254 2.42E-05 4.615689282 -0.162074366 AGS(ph)PRGS(ph)PLAEGPQAFFPER ddPTM_HeLa_A486_30min_R1 1 AGSPRGSPLAEGPQAFFPER 20 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 2 0 AGS(1)PRGS(1)PLAEGPQAFFPER 74.65 0.0041211 78078000 52109 101910 178110 12887 164200 67204 52331 75828 114980 30767 TRUE FALSE FALSE 48456.42819 93834.28045 247078.962 30001.58727 143604.5049 58913.05376 39237.2303 58563.61971 124946.559 23062.74294 2.101069605 4.068652228 10.71333807 1.30086813 6.226688008 2.554468647 1.701325397 2.539317195 5.417679905 1 14.49327649 -6.282452456 22.66286463 2.679937622 4.961928095 0.154563009 2.614857042 489.6103941 528047.3585 0.917525979 0.810446116 5.22E-07 6.282452456 2.281990473 AGS(ph)PSPQPSGELPR ddPTM_HeLa_A485_30min_R1 4 AGSPSPQPSGELPR 14 0 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 AGS(0.994)PS(0.006)PQPSGELPR;AGS(1)PSPQPSGELPR;AGS(0.985)PS(0.015)PQPSGELPR;AGS(0.976)PS(0.024)PQPSGELPR ;;; 190.82 9.58E-18 3443060000 689924 743596 741893 855186 1175310 763506 1090000 1032690 811607 1034480 TRUE FALSE FALSE 843395.2136 830553.0838 1016350.093 901902.6457 1058292.01 803481.9936 857112.5955 779421.1583 974489.0804 776603.1742 1.086005365 1.069469082 1.308712258 1.161342981 1.36271914 1.034610751 1.103668674 1.003628602 1.254809551 1 19.56681808 AGS(ph)PSPQPSGELPR ddPTM_HeLa_A486_30min_R1 3 AGSPSPQPSGELPR 14 0 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 AGS(0.997)PS(0.003)PQPSGELPR;AGS(0.843)PS(0.157)PQPSGELPR;AGS(0.978)PS(0.022)PQPSGELPR ;; 156.17 2.22E-08 3193260000 457393 532070 381978 170962 617990 501740 555420 580710 406536 482760 TRUE FALSE FALSE 425332.1127 489906.8354 529890.1113 398008.1759 540475.9317 439840.4201 416448.0414 448495.0098 441774.8678 361873.7538 1.17536049 1.353805935 1.464295506 1.099853669 1.493548305 1.21545267 1.150810295 1.239368717 1.220798312 1 18.46512695 -8.559156734 0.362784641 0.962176985 1.324190486 0.345938171 0.119374942 3.144669342 0.790580146 0.342596151 0.105734238 2.76E-09 8.559156734 0.362013501 AGS(ph)PSRDVGPSLGLK ddPTM_HeLa_A485_30min_R1 1 AGSPSRDVGPSLGLK 15 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 AGS(0.771)PS(0.229)RDVGPSLGLK 104.25 0.000164 686440000 629430 620160 513680 576260 1032600 639700 715650 694750 486740 736190 TRUE FALSE FALSE 769444.532 692682.3173 703711.608 607739.6246 929790.7183 673193.7028 562745.5312 524361.4732 584424.2534 552671.3816 1.392227927 1.253334876 1.273291202 1.099640121 1.682357273 1.218072304 1.018228101 0.948776236 1.057453439 1 19.07606238 -6.671456665 4.116365007 1.000583455 1.328745324 0.552655198 0.140994624 0.174040121 5.485488011 0.057214163 0.042740583 2.13E-07 6.671456665 0.328161869 AGS(ph)PSRDVGPSLGLK ddPTM_HeLa_A486_30min_R1 1 AGSPSRDVGPSLGLK 15 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 AGS(0.603)PS(0.397)RDVGPSLGLK 102.31 0.00022156 773830000 665760 538470 382060 222320 731240 569150 754490 693200 407220 623880 TRUE FALSE FALSE 619093.662 495799.6761 530003.8639 517572.1954 639521.0607 498934.0597 565708.6218 535373.4924 442518.1575 467656.3872 1.323821675 1.060179417 1.133318989 1.106736077 1.367502034 1.066881739 1.209667263 1.144800984 0.946246367 1 18.83508937 -7.701414558 5.315353495 0.972985218 1.174351873 0.416188077 0.096729266 0.177371689 9.73898095 0.069162292 0.023835397 1.99E-08 7.701414558 0.201366655 AGS(ph)PSRDVGPSLGLKK ddPTM_HeLa_A486_30min_R1 1 AGSPSRDVGPSLGLKK 16 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 AGS(0.5)PS(0.5)RDVGPS(0.001)LGLKK 68.168 0.0068988 385030000 158280 120680 73585 87610 173380 126580 196590 226190 93752 225880 TRUE FALSE FALSE 147185.3894 111116.8773 102079.0827 203960.5076 151633.0637 110963.8466 147401.1027 174691.4747 101878.4988 169318.1778 0.869282857 0.656260767 0.602883187 1.204599 0.895551002 0.655356962 0.870556869 1.031734909 0.601698531 1 17.36937734 -13.01220904 0.021224473 1.995667022 2.79E-06 0.048363974 0.190419174 8634.323478 16.3023148 1002.789213 581.5436778 9.72E-14 13.01220904 -1.995664231 AGSALPGFANS(ph)PAGSTSVVLVPPAHGTLVPDGNK ddPTM_HeLa_A486_30min_R1 1 AGSALPGFANSPAGSTSVVLVPPAHGTLVPDGNK 34 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 AGSALPGFANS(0.966)PAGS(0.023)T(0.005)S(0.005)VVLVPPAHGTLVPDGNK 147.59 1.34E-09 220900000 106000 111410 71204 5846.4 112450 95629 120280 114830 86173 73205 TRUE FALSE FALSE 98569.94738 102581.4659 98776.09571 13610.71466 98345.47245 83831.26626 90184.67181 88685.71572 93642.54502 54873.99152 1.79629629 1.869400476 1.800053048 0.248035805 1.792205555 1.52770491 1.643486638 1.616170307 1.706501431 1 15.7438349 AGSATVLSGS(ph)IAGLEGGSQLALR ddPTM_HeLa_A485_30min_R1 1 AGSATVLSGSIAGLEGGSQLALR 23 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 AGSATVLS(0.001)GS(0.999)IAGLEGGSQLALR 164.99 1.44E-14 77805000 53354 55433 56225 46857 88997 52236 80050 78915 48590 75501 TRUE FALSE FALSE 65222.41323 61915.40715 77024.96722 49416.67926 80136.14619 54970.99619 62946.66355 59560.97252 58341.56731 56679.99019 1.150713206 1.092367993 1.358944611 0.871854055 1.413834863 0.969848372 1.110562358 1.050828914 1.029315056 1 15.79055189 AGSATVLSGS(ph)IAGLEGGSQLALR ddPTM_HeLa_A486_30min_R1 2 AGSATVLSGSIAGLEGGSQLALR 23 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 AGSATVLS(0.001)GS(0.999)IAGLEGGSQLALR;AGSATVLS(0.004)GS(0.996)IAGLEGGSQLALR ; 219.99 5.47E-38 203909000 196210 254210 255130 102560 296270 264550 300220 288630 194167 192663 TRUE FALSE FALSE 182456.6922 234065.4738 353923.1686 238764.8631 259109.054 231912.5107 225101.7806 222915.2497 210997.5519 144418.9308 1.263384871 1.620739556 2.450670191 1.653279538 1.794148818 1.605831794 1.558672256 1.54353206 1.461010345 1 17.13990034 -8.11357511 0.569693624 0.991874717 1.777283833 0.380040318 0.279703705 1.125109163 0.841998622 0.325713601 0.13933681 7.70E-09 8.11357511 0.785409116 AGSCCLS(ph)PGGR ddPTM_HeLa_A485_30min_R1 4 AGSCCLSPGGR 11 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 1 0 AGSCCLS(1)PGGR;AGSCCLS(1)PGGR;AGSCCLS(1)PGGR;AGSCCLS(1)PGGR ;;; 183.08 1.70E-10 1930470000 1137360 1476780 1388890 1077750 1770020 1380680 1675130 1717480 1379920 1480380 TRUE FALSE FALSE 1390361.808 1649476.575 1902698.208 1136624.753 1593790.594 1452970.27 1317224.791 1296265.337 1656857.287 1111348.51 1.251058327 1.484211802 1.712062589 1.022743759 1.434105125 1.307393906 1.185249072 1.166389593 1.490853023 1 20.08387988 -13.76864344 0.094568138 7.33E-10 1.588626813 0.228252558 0.188043742 277.8002416 1.8924463 56.7862134 3.854215264 1.70E-14 13.76864344 1.588626812 AGSCCLS(ph)PGGR ddPTM_HeLa_A486_30min_R1 4 AGSCCLSPGGR 11 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 1 0 AGSCCLS(1)PGGR;AGSCCLS(1)PGGR;AGSCCLS(1)PGGR;AGSCCLS(1)PGGR ;;; 178.36 5.38E-10 2102450000 1206740 1476460 1355250 443464 1678240 1259900 1439480 1507080 1134480 1299370 TRUE FALSE FALSE 1122153.758 1359459.932 1880039.095 1032406.603 1467739.49 1104466.348 1079306.879 1163950.783 1232817.64 973999.2945 1.152109415 1.395750428 1.930226341 1.05996648 1.506920486 1.133949844 1.108118748 1.195022204 1.265727446 1 19.8935612 -6.271611315 23.70898496 1.150724698 1.417825705 0.260177656 0.225754404 517.8677626 1207053.041 0.0791586 0.07067464 5.35E-07 6.271611315 0.267101007 AGSES(ph)PHPGR ddPTM_HeLa_A485_30min_R1 2 AGSESPHPGR 10 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 AGSES(1)PHPGR;AGS(0.001)ES(0.999)PHPGR ; 105.94 0.00068926 948090000 751360 1004760 966190 698630 859750 1085070 761530 949570 964690 940250 TRUE FALSE FALSE 918497.4398 1122257.942 1323623.888 736794.3879 774150.2712 1141882.587 598822.8944 716686.4686 1158294.434 705862.979 1.301240421 1.589909055 1.875185308 1.043820699 1.096742986 1.617711399 0.848355718 1.015333698 1.640962154 1 19.42902863 -5.274705106 24.98460699 1.181955153 1.588891357 0.314352862 0.276365803 908.7243137 1711485.4 0.077778384 0.116120747 5.31E-06 5.274705106 0.406936204 AGSES(ph)PHPGR ddPTM_HeLa_A486_30min_R1 1 AGSESPHPGR 10 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 AGSES(1)PHPGR 96.334 0.0016591 522620000 501240 300700 592850 231160 436730 719580 405590 360670 532160 493360 TRUE FALSE FALSE 466105.6644 276871.4369 822417.3971 538152.1622 381951.2511 630805.5358 304107.0921 278553.3144 578288.0573 369819.4448 1.260360078 0.74866652 2.223834925 1.45517541 1.032804674 1.705712192 0.822312338 0.753214355 1.563703763 1 18.49646156 -6.772352749 24.99797553 1.014242166 1.397279248 0.156154312 0.419648433 425.5046225 974644.005 0.176683165 0.120420172 1.69E-07 6.772352749 0.383037082 AGSES(ph)PHPGRR ddPTM_HeLa_A485_30min_R1 4 AGSESPHPGRR 11 1 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 AGS(0.183)ES(0.817)PHPGRR;AGSES(1)PHPGRR;AGS(0.015)ES(0.985)PHPGRR;AGS(0.071)ES(0.929)PHPGRR ;;; 142.77 9.00E-07 673926000 344812 572327 308602 329685 291695 557072 408709 718308 443455 446120 TRUE FALSE FALSE 421514.2398 639255.6641 422766.7218 347694.8567 262652.8216 586239.4285 321384.9833 542141.8367 532452.3509 334910.4942 1.258587733 1.908735842 1.262327485 1.038172475 0.78424781 1.750436127 0.95961455 1.618766345 1.589834777 1 18.35341606 -4.931776406 24.3017432 1.255260425 1.58413514 0.136598263 0.334987565 77.81953372 27717.45392 0.087223541 0.181570265 1.17E-05 4.931776406 0.328874715 AGSES(ph)PHPGRR ddPTM_HeLa_A486_30min_R1 1 AGSESPHPGRR 11 1 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 AGSES(1)PHPGRR 100.55 0.0010925 34518000 12948 7007.8 15864 3670.5 9073.7 19624 8259 5797.2 14846 13099 TRUE FALSE FALSE 12040.41206 6452.476406 22006.96565 8545.109497 7935.591937 17202.9904 6192.510845 4477.304112 16132.86323 9818.92514 1.226245428 0.657146919 2.241280521 0.87026934 0.808193547 1.752023786 0.63067095 0.455987193 1.643037604 1 13.26134939 -6.793899957 24.99984914 0.887089774 1.238290506 0.081551448 0.525738908 508.5430796 391655.1859 0.21720577 0.146451922 1.61E-07 6.793899957 0.351200732 AGSLQLSSMSAGNSS(ph)LRR ddPTM_HeLa_A485_30min_R1 2 AGSLQLSSMSAGNSSLRR 18 1 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2;A0A0B4J1Z0 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 AGSLQLSSMSAGNS(0.291)S(0.708)LRR;AGSLQLSSMS(0.002)AGNS(0.344)S(0.654)LRR ; 100.14 0.00019613 1059010000 202108 221359 194972 235900 295380 218268 290520 302760 226400 329210 TRUE FALSE FALSE 247066.2273 247245.0095 267100.2563 248786.6197 265970.9301 229696.175 228448.0287 228507.6353 271836.4033 247144.0057 0.999685291 1.000408684 1.08074746 1.006646384 1.076177953 0.929402169 0.92435189 0.924593071 1.099910971 1 17.91499239 -6.264520365 24.97284148 0.967732455 1.032155546 0.203036656 0.055440502 412.0504791 3339844.356 0.019175778 0.01762126 5.44E-07 6.264520365 0.064423091 AGSLQLSSMSAGNSS(ph)LRR ddPTM_HeLa_A486_30min_R1 2 AGSLQLSSMSAGNSSLRR 18 1 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2;A0A0B4J1Z0 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 AGSLQLSSMS(0.003)AGNS(0.316)S(0.68)LRR;AGSLQLSSMSAGNS(0.028)S(0.972)LRR ; 122.65 9.43E-06 382450000 218020 231640 180626 116373 296760 235920 277670 296700 203760 301880 TRUE FALSE FALSE 202737.9239 213284.0028 250569.2245 270922.2252 259537.5936 206814.5891 208194.0291 229147.8869 221422.0809 226287.2831 0.895931583 0.942536407 1.107305815 1.197249008 1.146938485 0.913947024 0.920042993 1.01264147 0.978499887 1 17.78779598 -6.27465893 24.89133178 0.963004913 1.062054177 0.21668302 0.088168499 1309.366267 2465421.617 0.03532085 0.031325298 5.31E-07 6.27465893 0.099049264 AGSNEDPILAPS(ph)GTPPPTIPPDETFGGRVPR ddPTM_HeLa_A485_30min_R1 2 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGS(0.01)NEDPILAPS(0.491)GT(0.491)PPPT(0.008)IPPDETFGGRVPR;AGSNEDPILAPS(0.499)GT(0.499)PPPT(0.002)IPPDETFGGRVPR ; 66.116 0.0020427 833530000 76778 165117 131985 50601 166719 149053 175127 235943 107291 69776 TRUE FALSE FALSE 93857.00122 184425.9968 180811.7439 53365.2045 150119.871 156857.1846 137709.6858 178077.6093 128823.3196 52382.12733 1.791775287 3.520780965 3.451783138 1.018767416 2.865860526 2.994479083 2.628944123 3.399587195 2.459299118 1 15.67678703 -8.031756853 23.04571928 0.999999974 2.729857341 0.320571462 0.741741653 1810.015924 1313514.964 0.712730324 0.184026178 9.29E-09 8.031756853 1.729857367 AGSNEDPILAPS(ph)GTPPPTIPPDETFGGRVPR ddPTM_HeLa_A486_30min_R1 2 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGSNEDPILAPS(0.5)GT(0.5)PPPTIPPDETFGGRVPR;AGS(0.001)NEDPILAPS(0.499)GT(0.499)PPPT(0.001)IPPDETFGGRVPR ; 74.868 0.00067553 225723000 100505 90977 77803 32809 139119 58568 99771 113311 58483 107942 TRUE FALSE FALSE 93460.11851 83767.65119 107930.4052 76381.01008 121669.3978 51342.47564 74807.24053 87512.55886 63552.35353 80912.62062 1.155074669 1.035285355 1.333913108 0.943993774 1.503713473 0.634542241 0.924543538 1.081568712 0.785444261 1 16.30407713 -6.269596679 24.99943526 0.892775551 1.179396302 0.416963325 0.182259327 655.1188793 2007717.768 0.060899055 0.054602837 5.38E-07 6.269596679 0.286620752 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGR ddPTM_HeLa_A485_30min_R1 3 AGSNEDPILAPSGTPPPTIPPDETFGGR 28 0 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGSNEDPILAPS(0.012)GT(0.985)PPPT(0.002)IPPDETFGGR;AGSNEDPILAPS(0.123)GT(0.86)PPPT(0.017)IPPDETFGGR;AGSNEDPILAPS(0.041)GT(0.953)PPPT(0.005)IPPDETFGGR ;; 99.709 0.0014461 594960000 485373 631512 640030 561058 771760 541169 664750 612748 622470 736850 TRUE FALSE FALSE 593342.5493 705361.835 876803.7309 591707.1779 694920.8646 569503.772 522720.732 462470.5922 747394.0194 553166.8557 1.072628526 1.275133945 1.585061943 1.069672146 1.256259043 1.029533433 0.944960325 0.836041761 1.351118585 1 19.07735519 -6.085758219 1.759792969 1.014151393 1.283942512 0.255335165 0.182263344 0.466902708 2.890252596 0.071923078 0.074540451 8.21E-07 6.085758219 0.269791119 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGR ddPTM_HeLa_A486_30min_R1 2 AGSNEDPILAPSGTPPPTIPPDETFGGR 28 0 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGSNEDPILAPS(0.024)GT(0.971)PPPT(0.006)IPPDETFGGR;AGSNEDPILAPS(0.101)GT(0.899)PPPTIPPDETFGGR ; 100.19 0.0013549 405450000 409020 513160 436300 164589 577680 493430 545720 519900 444680 486470 TRUE FALSE FALSE 380349.8102 472495.3327 605247.0445 383171.5099 505221.9877 432555.6234 409175.084 401530.1193 483225.2204 364654.7456 1.043040889 1.295733398 1.659781072 1.050778893 1.385480359 1.186205935 1.122089014 1.101124075 1.325158184 1 18.47617164 -6.458287274 6.745536096 1.146535064 1.294804353 0.135622512 0.179004512 0.523742846 45.66802188 0.063444836 0.055419777 3.48E-07 6.458287274 0.148269289 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGRVPR ddPTM_HeLa_A485_30min_R1 1 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGSNEDPILAPS(0.018)GT(0.982)PPPT(0.001)IPPDETFGGRVPR 180.47 1.03E-20 1030600000 208430 455420 372470 135620 451370 442260 484220 699770 306620 193670 TRUE FALSE FALSE 254794.5344 508677.4074 510262.1528 143028.5772 406430.0179 465416.0497 380762.4413 528150.3103 368155.8215 145391.6332 1.752470405 3.498670426 3.509570265 0.98374696 2.795415451 3.201119895 2.618874503 3.632604563 2.532166489 1 17.14958472 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGRVPR ddPTM_HeLa_A486_30min_R1 1 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGSNEDPILAPS(0.264)GT(0.736)PPPTIPPDETFGGRVPR 108.86 0.00012093 451790000 167870 122860 121450 55602 203810 94935 160200 179240 89681 152000 TRUE FALSE FALSE 156103.1799 113124.1262 168478.6925 129444.266 178246.2493 83222.88493 120116.2656 138430.9648 97454.62129 113938.2106 1.370068733 0.992855035 1.478684733 1.136091793 1.56441152 0.730421203 1.054222854 1.214965234 0.855328697 1 16.79789213 -6.263105622 24.999759 0.989625138 1.290775938 0.4323319 0.192207833 163.7711944 2457156.119 0.06382112 0.059254577 5.46E-07 6.263105622 0.3011508 AGSNMLLIGVHGPT(ph)TPCEEVSMK ddPTM_HeLa_A485_30min_R1 1 AGSNMLLIGVHGPTTPCEEVSMK 23 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 AGSNMLLIGVHGPT(0.56)T(0.44)PCEEVSMK 71.506 0.0096275 78399000 56590 55615 53665 63590 83203 62165 79156 87461 62350 88048 TRUE FALSE FALSE 69178.25027 62118.69046 73517.91669 67063.76068 74919.01718 65419.86327 62243.67395 66011.05262 74863.07309 66099.254 1.046581407 0.939778994 1.112235195 1.014591794 1.133432114 0.989721658 0.94166984 0.998665622 1.132585749 1 16.01234637 -6.563385093 0.002743687 0.427489367 1.630234546 0.002835243 0.069136655 412512.9221 572.1929477 124726.8887 126092.8104 2.73E-07 6.563385093 1.202745179 AGSRLS(ph)AEER ddPTM_HeLa_A485_30min_R1 5 AGSRLSAEER 10 1 B1AJQ6;Q86Y82 B1AJQ6 STX12 Syntaxin-12 1 0 AGSRLS(1)AEER;AGSRLS(1)AEER;AGSRLS(1)AEER;AGS(0.002)RLS(0.998)AEER;AGS(0.001)RLS(0.999)AEER ;;;; 143.94 2.82E-06 3630080000 2024486 2577830 2087761 2452187 2266999 2362840 3094217 3030040 2097162 3819240 TRUE FALSE FALSE 2474825.926 2879284.794 2860110.673 2586143.767 2041288.62 2486554.649 2433112.261 2286917.939 2518043.177 2867173.756 0.863158684 1.004224034 0.99753657 0.901983621 0.711951487 0.867249375 0.848609979 0.797620979 0.878231803 1 21.45119791 -5.525094757 24.99715501 0.838109375 0.958208521 0.262963437 0.076831962 76.18341966 859357.172 0.021579409 0.02804396 2.98E-06 5.525094757 0.120099146 AGSRLS(ph)AEER ddPTM_HeLa_A486_30min_R1 3 AGSRLSAEER 10 1 B1AJQ6;Q86Y82 B1AJQ6 STX12 Syntaxin-12 1 0 AGSRLS(1)AEER;AGSRLS(1)AEER;AGS(0.001)RLS(0.999)AEER ;; 140.1 7.48E-06 3019580000 1289010 1418030 1347460 460915 1863600 1431080 1521040 1438900 1512960 1744520 TRUE FALSE FALSE 1198657.055 1305660.138 1869232.598 1073033.413 1629849.911 1254527.9 1140459.704 1111293.881 1644104.591 1307680.837 0.916628142 0.998454746 1.429425702 0.820562161 1.246366747 0.95935328 0.872123894 0.849820422 1.25726748 1 20.31857904 AGSS(ph)PAQGAQNEPPR ddPTM_HeLa_A485_30min_R1 2 AGSSPAQGAQNEPPR 15 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AGS(0.046)S(0.954)PAQGAQNEPPR;AGS(0.05)S(0.95)PAQGAQNEPPR ; 197.55 2.34E-16 0 315740 320640 328010 397770 387520 295630 341210 338890 327210 475360 TRUE FALSE FALSE 385975.2737 358136.0588 449354.5486 419499.1679 348937.1481 311108.7297 268307.6961 255776.6961 392878.0457 356861.5004 1.081582836 1.003571577 1.259184721 1.175523747 0.97779432 0.871791239 0.751853859 0.716739396 1.100925836 1 18.44500474 -5.988510191 3.296254541 0.863990623 1.129221348 0.462008936 0.121237403 0.210097797 4.77978799 0.041569639 0.045423077 1.03E-06 5.988510191 0.265230725 AGSS(ph)PAQGAQNEPPR ddPTM_HeLa_A486_30min_R1 2 AGSSPAQGAQNEPPR 15 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AGS(0.083)S(0.917)PAQGAQNEPPR;AGS(0.001)S(0.999)PAQGAQNEPPR ; 213.55 3.47E-26 473180000 560670 653450 578080 165382 700200 601520 611920 558550 546370 591990 TRUE FALSE FALSE 521369.9283 601668.2422 801928.0575 385017.6539 612374.3869 527310.5782 458811.1438 431380.3581 593729.7915 443751.8508 1.174913248 1.35586644 1.807154282 0.867641799 1.379992863 1.188300572 1.033936293 0.972120696 1.337977048 1 18.75939361 -5.274890243 24.99971288 1.121427441 1.436966872 0.347480289 0.209668557 900.0954661 1672911.577 0.058667974 0.087549431 5.31E-06 5.274890243 0.315539431 AGSS(ph)SPEPWARPSCTPQEGGCPRPK ddPTM_HeLa_A486_30min_R1 1 AGSSSPEPWARPSCTPQEGGCPRPK 25 2 Q86VE0 Q86VE0 MYPOP "Myb-related transcription factor, partner of profilin" 1 0 AGS(0.082)S(0.459)S(0.459)PEPWARPSCTPQEGGCPRPK 110.08 0.000157 388060000 150410 200120 140750 63076 220340 176770 187170 190860 127400 199290 TRUE FALSE FALSE 139867.0357 184261.7624 195252.1694 146844.1157 192702.9026 154961.9147 140338.0863 147405.3444 138443.1346 149386.4868 0.936276357 1.233456695 1.307026984 0.982981251 1.289962075 1.03732217 0.939429592 0.986738142 0.926744698 1 17.18869013 -6.498796353 8.58187599 0.965637035 1.155132462 0.377565341 0.113467727 0.282915044 92.5949311 0.039752202 0.033940951 3.17E-07 6.498796353 0.189495427 AGSS(ph)TPGDAPPAVAEVQGR ddPTM_HeLa_A486_30min_R1 1 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AGS(0.054)S(0.518)T(0.428)PGDAPPAVAEVQGR 96.993 0.00035704 366760000 181150 204580 175010 61101 222220 188140 228060 259130 167050 213540 TRUE FALSE FALSE 168452.3205 188368.3357 242778.5589 142246.2159 194347.0955 164929.1997 170996.9758 200131.7558 181530.0285 160068.1941 1.052378465 1.176800531 1.516719548 0.888660091 1.214151859 1.030368341 1.068275786 1.250290583 1.134079319 1 17.28832714 -5.278957355 24.94069702 1.096690211 1.241449685 0.208101314 0.145712303 1376.433312 1959653.407 0.040864485 0.060764528 5.26E-06 5.278957355 0.144759474 AGSSPCLGSSSAASS(ph)PPPPASR ddPTM_HeLa_A485_30min_R1 2 AGSSPCLGSSSAASSPPPPASR 22 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 AGSSPCLGSSSAAS(0.002)S(0.998)PPPPASR;AGSSPCLGSSSAAS(0.002)S(0.998)PPPPASR ; 396.49 1.39E-158 514980000 210691 296980 312270 213390 323490 270290 302730 338250 262940 297520 TRUE FALSE FALSE 257558.4861 331709.2276 427791.6676 225046.9554 291282.1998 284441.9665 238049.2624 255293.6571 315709.6462 223353.7394 1.153141589 1.485129501 1.915310076 1.007580871 1.304129496 1.273504384 1.065794837 1.143001491 1.413496129 1 17.76897088 -5.290167219 24.99945839 1.183706334 1.514587553 0.357872849 0.211609705 782.1804546 680665.1247 0.05963318 0.088468136 5.13E-06 5.290167219 0.330881219 AGSSPCLGSSSAASS(ph)PPPPASR ddPTM_HeLa_A486_30min_R1 1 AGSSPCLGSSSAASSPPPPASR 22 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 AGSSPCLGSSSAAS(0.028)S(0.972)PPPPASR 142.26 1.59E-11 0 71205 79999 56388 32102 83531 68487 85195 81281 61155 84425 TRUE FALSE FALSE 66213.8972 73659.58789 78222.94372 74735.07835 73053.76308 60037.77026 63878.3099 62775.09065 66455.96464 63284.43049 1.046290481 1.163944865 1.23605353 1.180939415 1.154371818 0.948697331 1.009384289 0.991951578 1.050115552 1 15.94956298 -6.24680472 22.83465753 1.000111392 1.162541056 0.712007719 0.049620452 141.3269321 220514.0011 0.017046546 0.016951806 5.66E-07 6.24680472 0.162429664 AGSSS(ph)PEPWARPSCTPQEGGCPRPK ddPTM_HeLa_A485_30min_R1 2 AGSSSPEPWARPSCTPQEGGCPRPK 25 2 Q86VE0 Q86VE0 MYPOP "Myb-related transcription factor, partner of profilin" 1 0 AGS(0.032)S(0.17)S(0.798)PEPWARPSCTPQEGGCPRPK;AGS(0.033)S(0.197)S(0.769)PEPWARPSCTPQEGGCPRPK ; 146.17 2.01E-09 689140000 385700 412150 349560 420740 487750 441110 613060 682590 408180 552290 TRUE FALSE FALSE 471497.6344 460347.3573 478876.7904 443723.9608 439187.8974 464205.8375 482074.7228 515183.7322 490097.982 414614.2671 1.137195875 1.110302741 1.154993517 1.070209098 1.059268656 1.119608934 1.162706547 1.242561516 1.182057688 1 18.66141024 -6.718018085 4.488325717 1.167459186 1.105957132 0.045034542 0.063876956 0.375482872 16.36563835 0.025236972 0.018569182 1.91E-07 6.718018085 -0.061502054 AGSSS(ph)PEPWARPSCTPQEGGCPRPK ddPTM_HeLa_A486_30min_R1 1 AGSSSPEPWARPSCTPQEGGCPRPK 25 2 Q86VE0 Q86VE0 MYPOP "Myb-related transcription factor, partner of profilin" 1 0 AGS(0.033)S(0.149)S(0.818)PEPWARPSCTPQEGGCPRPK 101.66 0.00047044 314870000 105350 152020 99123 34014 163790 138160 163200 162380 112550 158120 TRUE FALSE FALSE 97965.50903 139973.3816 137506.0802 79186.31097 143245.9309 121115.2239 122365.6338 125409.6187 122305.9246 118525.7228 0.826533741 1.180953621 1.160137031 0.668093888 1.208564078 1.021847587 1.03239728 1.058079341 1.031893514 1 16.85484067 -4.230890943 23.1198053 1.03859431 0.826532764 0.167978478 0.142629606 7922.401172 5995598.225 0.034673797 3.516142894 5.88E-05 4.230890943 -0.212061546 AGSST(ph)PGDAPPAVAEVQGR ddPTM_HeLa_A485_30min_R1 3 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AGS(0.014)S(0.088)T(0.899)PGDAPPAVAEVQGR;AGS(0.008)S(0.081)T(0.91)PGDAPPAVAEVQGR;AGS(0.025)S(0.133)T(0.842)PGDAPPAVAEVQGR ;; 115.8 0.00016466 687160000 471240 597220 530930 546460 767140 536050 724700 783950 551780 736500 TRUE FALSE FALSE 576065.7122 667059.6839 727343.1008 576311.7261 690760.848 564116.7491 569861.9247 591685.0333 662517.1848 552904.1043 1.041890823 1.206465423 1.315495934 1.042335771 1.249332104 1.020279547 1.030670455 1.070140425 1.198249714 1 19.07666976 -6.271215861 24.95540874 1.066176957 1.173936518 0.248492982 0.093135449 1002.306121 2558475.729 0.032386053 0.028935383 5.36E-07 6.271215861 0.107759561 AGSST(ph)PGDAPPAVAEVQGR ddPTM_HeLa_A486_30min_R1 1 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AGS(0.027)S(0.147)T(0.827)PGDAPPAVAEVQGR 101.42 0.00092256 359840000 323850 362590 291900 126380 405920 332720 396760 418130 271500 363160 TRUE FALSE FALSE 301149.7874 333857.0479 404931.4974 294219.0269 355005.7285 291672.3892 297486.4515 322930.9267 295033.8386 272222.3722 1.106263915 1.226412969 1.48750264 1.080803993 1.304101958 1.071449003 1.092806771 1.18627622 1.083797177 1 18.05442611 -6.269134562 24.85894511 1.098879402 1.244998669 0.315267451 0.112821164 733.7417388 2370312.789 0.039237771 0.035209897 5.38E-07 6.269134562 0.146119267 AGT(ph)EDEEEEEEGRR ddPTM_HeLa_A485_30min_R1 2 AGTEDEEEEEEGRR 14 1 F8WBH7;O95456-2;O95456 F8WBH7 PSMG1 Proteasome assembly chaperone 1 1 0 AGT(1)EDEEEEEEGRR;AGT(1)EDEEEEEEGRR ; 280.7 3.61E-49 2423900000 820580 867150 703260 1523180 1105580 753610 1278860 1025660 806570 1827120 TRUE FALSE FALSE 1003115.19 968555.6493 963425.1391 1606387.467 995504.5733 793067.8543 1005621.114 774115.2768 968441.2007 1371652.61 0.73131869 0.706123141 0.702382755 1.171132877 0.725770189 0.578184191 0.733145628 0.56436686 0.706039703 1 20.38748371 -5.983735546 24.99946304 0.685926349 0.827392532 0.078741743 0.168932787 506.6774296 778790.2148 0.052333318 0.059324731 1.04E-06 5.983735546 0.141466183 AGT(ph)EDEEEEEEGRR ddPTM_HeLa_A486_30min_R1 2 AGTEDEEEEEEGRR 14 1 F8WBH7;O95456-2;O95456 F8WBH7 PSMG1 Proteasome assembly chaperone 1 1 0 AGT(1)EDEEEEEEGRR;AGT(1)EDEEEEEEGRR ; 283.05 2.64E-49 2904700000 929900 1000130 556900 699880 810400 1115670 1371450 1208170 777240 1798950 TRUE FALSE FALSE 864718.812 920876.0564 772546.5943 1629356.01 708752.0753 978029.9787 1028298.704 933096.0652 844611.789 1348481.211 0.641253883 0.682898693 0.572901267 1.208289739 0.525592844 0.725282615 0.762560647 0.691960746 0.626343016 1 20.36290399 -10.99995547 3.029726706 1.279861356 0.720021674 0.186793863 0.177998741 87415097.5 88573025.51 170677821 0.043239931 1.00E-11 10.99995547 -0.559839683 AGT(ph)PVSELTK ddPTM_HeLa_A485_30min_R1 4 AGTPVSELTK 10 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 AGT(1)PVSELTK;AGT(0.986)PVS(0.014)ELTK;AGT(1)PVSELTK;AGT(1)PVSELTK ;;; 162.68 2.57E-06 1433390000 2784690 1661620 1308840 6115300 2921880 1899150 3817110 2699290 1842150 7738200 TRUE FALSE FALSE 3404134.683 1855932.005 1793034.381 6449363.354 2630967.368 1998586.557 3001553.266 2037284.895 2211852.608 5809209.151 0.585989348 0.31948101 0.308653783 1.110196446 0.452895962 0.344037632 0.516688793 0.350699182 0.38074935 1 22.46991034 -10.30699408 3.490394347 1.001952862 0.485612568 0.318251579 0.225914168 188242175.2 280478230 3843552.389 0.056755905 4.93E-11 10.30699408 -0.516340293 AGT(ph)PVSELTK ddPTM_HeLa_A486_30min_R1 4 AGTPVSELTK 10 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 AGT(1)PVSELTK;AGT(1)PVSELTK;AGT(1)PVSELTK;AGT(1)PVSELTK ;;; 162.68 2.90E-06 2100470000 2918890 3295440 1273220 2478220 2684750 4053470 5459100 4634580 2393620 6339400 TRUE FALSE FALSE 2714290.884 3034297.333 1766244.882 5769421.402 2348003.621 3553394.084 4093175.44 3579387.306 2601100.909 4751972.977 0.571192407 0.638534215 0.371686643 1.214110735 0.494111316 0.747772368 0.861363366 0.753242353 0.547372833 1 22.1800952 -14 0.040376337 2.168858265 1.04E-11 0.149205165 0.22124443 1710.109118 5.144303105 250.2856725 74.28930229 1.00E-14 14 -2.168858265 AGTDS(ph)PVSCASVTEER ddPTM_HeLa_A485_30min_R1 2 AGTDSPVSCASVTEER 16 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 AGTDS(1)PVSCASVTEER;AGTDS(1)PVSCASVTEER ; 411.83 1.55E-152 1202620000 507660 600450 527590 510520 796160 522440 659650 804640 592180 759170 TRUE FALSE FALSE 620587.2156 670667.4043 722767.4959 538408.4149 716891.5149 549794.1506 518710.3887 607300.7784 711025.0942 569922.8905 1.088896807 1.176768674 1.26818471 0.944703966 1.257874577 0.964681643 0.910141349 1.065584114 1.247581219 1 19.12040721 -6.276243688 24.9675329 1.033730658 1.144385761 0.17614798 0.118377763 1513.612922 2552708.431 0.042306885 0.037465667 5.29E-07 6.276243688 0.110655103 AGTDS(ph)PVSCASVTEER ddPTM_HeLa_A486_30min_R1 2 AGTDSPVSCASVTEER 16 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 AGTDS(1)PVSCASVTEER;AGTDS(1)PVSCASVTEER ; 483.89 3.08E-240 1507040000 710870 803370 663860 276980 890890 723590 916580 808350 647810 716230 TRUE FALSE FALSE 661041.6839 739708.0354 920924.3708 644823.4378 779146.269 634320.8227 687241.9894 624306.3512 703962.6924 536881.3461 1.231262156 1.377786807 1.715321975 1.201053906 1.451244813 1.181491641 1.28006308 1.162838597 1.311207211 1 19.03424375 -7.751955135 0.333457787 0.981589511 1.437635956 0.360417372 0.147148573 1.603308657 0.573363112 0.272462096 0.190115536 1.77E-08 7.751955135 0.456046444 AGTEDEEEEEEGRR ddPTM_HeLa_A486_30min_R1 1 AGTEDEEEEEEGRR 14 1 F8WBH7;O95456-2;O95456 F8WBH7 PSMG1 Proteasome assembly chaperone 1 0 0 148.48 3.76E-07 0 71727 92078 67903 25700 93722 87320 82031 90521 76474 88438 FALSE FALSE TRUE 66699.3077 84781.40394 94196.86011 59830.89881 81966.51284 76547.3462 61505.97616 69911.34436 83102.82789 66292.54917 1.006135811 1.278897931 1.420926805 0.902528256 1.236436279 1.154690039 0.927796214 1.054588264 1.253577196 1 16.01655911 -5.261882096 24.99999847 1.081764986 1.239677946 0.201445242 0.145240594 66.35180015 3746938.955 0.040397491 0.064243002 5.47E-06 5.261882096 0.15791296 AGTFIAPPVYSNITPYQSHLRS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 AGTFIAPPVYSNITPYQSHLRSPVR 25 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 AGTFIAPPVYSNITPYQS(0.099)HLRS(0.901)PVR;AGTFIAPPVYSNIT(0.071)PY(0.01)QS(0.176)HLRS(0.742)PVR ; 210.68 3.70E-29 3966000000 1530260 2409720 2297600 1392560 2872390 2238480 2644680 3037690 1993170 1929490 TRUE FALSE FALSE 1870661.058 2691515.792 3147577.851 1468632.027 2586404.766 2355683.351 2079622.513 2292691.765 2393180.937 1448503.653 1.291443797 1.858135316 2.172985788 1.013895977 1.785570068 1.626287478 1.435704017 1.582800126 1.652174596 1 20.46613189 -11.62634479 0.316172982 8.31E-13 1.647749115 0.262153114 0.30064961 78.30175334 2.73386013 53.96012169 0.281542859 2.36E-12 11.62634479 1.647749115 AGTFIAPPVYSNITPYQSHLRS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 AGTFIAPPVYSNITPYQSHLRSPVR 25 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 AGTFIAPPVYSNITPYQS(0.056)HLRS(0.944)PVR;AGTFIAPPVYSNIT(0.07)PY(0.012)QS(0.263)HLRS(0.654)PVR ; 169.39 2.56E-14 3117400000 2277910 2502890 2620080 639000 3305240 2164150 2523690 2786610 2133770 2177210 TRUE FALSE FALSE 2118240.272 2304551.881 3634645.144 1487624.293 2890665.979 1897159.176 1892236.069 2152159.734 2318726.902 1632022.445 1.297923493 1.412083448 2.227080366 0.911521957 1.771217049 1.162458998 1.15944243 1.318707191 1.420769003 1 20.63822947 -6.28682782 24.76107247 1.228892632 1.522786966 0.179918507 0.331771355 1308.052123 1275724.53 0.114110451 0.100676719 5.17E-07 6.28682782 0.293894334 AGTFQAFEQFGQQLLAHGHYAS(ph)PEIK ddPTM_HeLa_A485_30min_R1 2 AGTFQAFEQFGQQLLAHGHYASPEIK 26 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 AGTFQAFEQFGQQLLAHGHYAS(1)PEIK;AGTFQAFEQFGQQLLAHGHYAS(1)PEIK ; 203.58 1.64E-28 250620000 54707 48281 42560 70627 66168 60115 84789 88594 50722 99753 TRUE FALSE FALSE 66876.38341 53927.04296 58304.71507 74485.17417 59580.08159 63262.52844 66673.13749 66866.18259 60901.44015 74886.41292 0.893037613 0.720117854 0.778575349 0.994642035 0.795606029 0.844779794 0.890323557 0.892901395 0.813250866 1 16.19241637 -13.99999999 0.1454483 1.525841847 0.796919213 0.285702565 0.072471626 178.447657 1.56195002 27.26271299 0.406006148 1.00E-14 13.99999999 -0.728922633 AGTFQAFEQFGQQLLAHGHYAS(ph)PEIK ddPTM_HeLa_A486_30min_R1 2 AGTFQAFEQFGQQLLAHGHYASPEIK 26 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 AGTFQAFEQFGQQLLAHGHYAS(1)PEIK;AGTFQAFEQFGQQLLAHGHYAS(1)PEIK ; 258.62 3.18E-62 196672000 194976 188304 123162 117112 193298 219630 262910 254362 154706 318540 TRUE FALSE FALSE 181309.1893 173382.1052 170853.6248 272642.6545 169052.7624 192534.2836 197127.1372 196449.3253 168116.0406 238775.5107 0.759329082 0.726130183 0.71554082 1.141836756 0.707998747 0.806340161 0.825575189 0.822736489 0.704075724 1 17.86529535 -11.57687452 2.141131593 4.349435015 0.805142586 0.191121349 0.122520693 4262156.749 254847.7798 69809097.49 0.03190548 2.65E-12 11.57687452 -3.544292429 AGTFQAFEQFGQQLLAHGHYASPEIK ddPTM_HeLa_A485_30min_R1 2 AGTFQAFEQFGQQLLAHGHYASPEIK 26 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 252.8 1.51E-60 28996000 22773 25837 19932.3 23433 29982 25383 34280 37991 22401 35075 FALSE FALSE TRUE 27838.77528 28858.4124 27306.08722 24713.08545 26996.88681 26712.01463 26955.79796 28673.64768 26896.67523 26331.44801 1.057244375 1.095967544 1.037014266 0.938538794 1.025271637 1.014452932 1.023711189 1.08895066 1.021465862 1 14.68449924 -4.948186707 7.110724714 1.017965308 1.074892363 0.313017937 0.035417214 0.275413034 30.30290548 0.009897491 0.020752033 1.13E-05 4.948186707 0.056927056 AGTFQAFEQFGQQLLAHGHYASPEIK ddPTM_HeLa_A486_30min_R1 1 AGTFQAFEQFGQQLLAHGHYASPEIK 26 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 133.29 2.86E-12 11726000 6186.5 3842.5 4011.9 1825.3 7209.7 5369.1 5177 5989.1 4251.2 5325.4 FALSE FALSE TRUE 5752.858297 3538.006306 5565.415122 4249.390646 6305.392198 4706.715031 3881.659843 4625.512671 4619.697439 3991.885177 1.44113822 0.886299617 1.394182166 1.064507233 1.579552497 1.179070745 0.972387649 1.158728888 1.157272124 1 11.96285451 -6.525712966 24.68775324 1.083953768 1.260032566 0.196619042 0.19006761 141.2992429 1230765.994 0.069612406 0.05424213 2.98E-07 6.525712966 0.176078799 AGTGYAS(ph)PDRTHVLAAGK ddPTM_HeLa_A485_30min_R1 4 AGTGYASPDRTHVLAAGK 18 1 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 AGTGYAS(1)PDRTHVLAAGK;AGT(0.031)GYAS(0.968)PDRT(0.001)HVLAAGK;AGT(0.001)GYAS(0.994)PDRT(0.005)HVLAAGK;AGT(0.021)GYAS(0.979)PDRTHVLAAGK ;;; 201.13 1.63E-25 2057110000 1647070 1740200 1478710 1590680 2260410 2020020 2378620 2725420 1640830 2224770 TRUE FALSE FALSE 2013455.039 1943701.252 2025746.363 1677574.821 2035355.644 2125785.124 1870408.405 2057006.472 1970129.53 1670175.783 1.205534806 1.163770468 1.212894106 1.004430095 1.218647561 1.272791251 1.119887155 1.231610764 1.179594119 1 20.67156852 -9.89054466 4.718022871 0.99999943 1.177985656 0.368966392 0.070140093 46352680.22 3.74518393 522.3707846 0.016937539 1.29E-10 9.89054466 0.177986226 AGTGYAS(ph)PDRTHVLAAGK ddPTM_HeLa_A486_30min_R1 3 AGTGYASPDRTHVLAAGK 18 1 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 AGT(0.27)GYAS(0.73)PDRTHVLAAGK;AGT(0.317)GYAS(0.683)PDRTHVLAAGK;AGT(0.007)GYAS(0.988)PDRT(0.005)HVLAAGK ;; 159.77 7.13E-12 686350000 1596800 1733430 1305800 650520 2107540 1767460 1991750 2184230 1313900 1773520 TRUE FALSE FALSE 1484872.566 1596066.694 1811440.731 1514443.435 1843192.681 1549408.755 1493393.083 1686928.51 1427789.91 1329419.048 1.116933421 1.200574564 1.362580695 1.139176874 1.386464775 1.165478077 1.123342625 1.268921573 1.073995375 1 20.3423645 -7.919591469 4.303221071 1.001539656 1.221909642 0.410128618 0.089848197 0.182893165 5.960998913 0.084689635 0.022245243 1.20E-08 7.919591469 0.220369986 AGTLSITEFADMLSGNAGGFRS(ph)R ddPTM_HeLa_A485_30min_R1 3 AGTLSITEFADMLSGNAGGFRSR 23 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 AGTLSITEFADMLS(0.001)GNAGGFRS(0.999)R;AGTLSITEFADMLS(0.036)GNAGGFRS(0.964)R;AGTLSITEFADMLS(0.004)GNAGGFRS(0.996)R ;; 98.929 0.00021315 194440000 34178.2 127142 108284 34759 274988 219574 301287 760570 117119 90819 TRUE FALSE FALSE 41781.02268 142010.1509 148342.7577 36657.79616 247609.2292 231070.5551 236914.5712 574039.015 140623.709 68179.4947 0.612809216 2.082886527 2.175767924 0.537665999 3.631725789 3.389150303 3.474865459 8.419525805 2.062551353 1 16.05705029 -5.869434697 5.670886716 4.053920978 1.471856443 0.251249708 1.888375206 0.26865054 12.45674864 0.581289253 0.664185591 1.35E-06 5.869434697 -2.582064535 AGTLSITEFADMLSGNAGGFRS(ph)R ddPTM_HeLa_A486_30min_R1 1 AGTLSITEFADMLSGNAGGFRSR 23 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 AGTLSITEFADMLS(0.004)GNAGGFRS(0.996)R 103.64 0.00051632 84955000 33559 24394 68895 46933 213990 38070 87552 135570 29498 39909 TRUE FALSE FALSE 31206.6874 22460.9306 95572.98907 109262.3959 187149.3788 33373.31047 65645.56357 104703.6705 32054.91039 29915.52664 1.043160222 0.750811807 3.194762046 3.652364112 6.255927937 1.115584923 2.194364297 3.499977512 1.07151416 1 14.86860684 -4.759169147 24.98706357 2.916846646 0.896985299 0.185992068 1.516461064 87.16290087 959287.8304 0.397911298 0.953789139 1.74E-05 4.759169147 -2.019861348 AGTPIRDS(ph)HSPDLQLPTPEVIPSSGSK ddPTM_HeLa_A485_30min_R1 1 AGTPIRDSHSPDLQLPTPEVIPSSGSK 27 1 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 AGT(0.026)PIRDS(0.565)HS(0.408)PDLQLPTPEVIPSSGSK 145.86 3.32E-09 846410000 179060 291670 200790 147940 296250 324530 423280 551100 216200 266300 TRUE FALSE FALSE 218891.2793 325778.2693 275070.5766 156021.5876 266754.3098 341521.889 332842.7701 415941.8609 259589.3569 199916.3109 1.094914558 1.629573234 1.375928634 0.780434507 1.334329893 1.708324286 1.664910525 2.080579914 1.298490132 1 17.60903666 -6.147560971 5.251104984 1.623578999 1.238755039 0.16207663 0.334228779 0.352871258 13.98522921 0.110725296 0.110953688 7.12E-07 6.147560971 -0.38482396 AGTPIRDSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_HeLa_A485_30min_R1 1 AGTPIRDSHSPDLQLPTPEVIPSSGSK 27 1 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 AGT(0.001)PIRDS(0.183)HS(0.816)PDLQLPTPEVIPSSGSK 176.22 7.83E-15 192960000 125760 177870 128860 93130 197760 203620 252440 335830 130560 167050 TRUE FALSE FALSE 153734.8781 198670.3492 176530.6763 98217.45608 178070.32 214281.2283 198504.1318 253467.1659 156762.1944 125407.5093 1.225882556 1.58419819 1.407656346 0.783186403 1.419933471 1.708679404 1.582872771 2.021148233 1.250022389 1 16.93626421 -6.000156617 25 1.57893349 1.262359079 0.114517303 0.318021791 9.993543507 1595670.902 0.098000588 0.10997318 1.00E-06 6.000156617 -0.316574412 AGTPIRDSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_HeLa_A486_30min_R1 3 AGTPIRDSHSPDLQLPTPEVIPSSGSK 27 1 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 AGT(0.011)PIRDS(0.186)HS(0.803)PDLQLPTPEVIPSSGSK;AGT(0.006)PIRDS(0.149)HS(0.845)PDLQLPTPEVIPSSGSK;AGT(0.001)PIRDS(0.187)HS(0.81)PDLQLPT(0.002)PEVIPSSGSK ;; 201.88 1.54E-28 1128250000 362234 339057 226776 140931 508601 310086 436621 425652 273918 423710 TRUE FALSE FALSE 336843.2672 312188.8885 314589.7405 328094.4903 444807.5201 271830.742 327373.8077 328740.3315 297661.4328 317610.2581 1.060555377 0.982930748 0.990489861 1.03300974 1.400482222 0.855862602 1.030740662 1.03504318 0.937190866 1 18.27689798 -9.789792233 6.983321276 0.999999865 1.038455141 0.006269095 0.134399014 2.96E-10 1.39E-10 0.129824657 0.031487104 1.62E-10 9.789792233 0.038455276 AGVDYAPNLPPFPS(ph)PADVK ddPTM_HeLa_A485_30min_R1 1 AGVDYAPNLPPFPSPADVK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 AGVDYAPNLPPFPS(1)PADVK 154.19 8.85E-09 51099000 117140 97658 75682 135590 127410 89260 113170 100040 77588 168350 TRUE FALSE FALSE 143197.3889 109078.2536 103679.9212 142996.9384 114724.613 93933.51558 88990.30499 75505.03314 93159.19992 126383.4433 1.133039148 0.863073918 0.820359998 1.131453098 0.907750336 0.743242257 0.704129455 0.597428201 0.737115539 1 16.94744795 -6.202631237 3.763955454 0.726161004 0.970921567 0.388520332 0.133972823 0.230374613 6.617013708 0.045804497 0.044736356 6.27E-07 6.202631237 0.244760563 AGVDYAPNLPPFPS(ph)PADVK ddPTM_HeLa_A486_30min_R1 1 AGVDYAPNLPPFPSPADVK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 AGVDYAPNLPPFPS(1)PADVK 176.69 2.68E-13 58714000 154450 171870 92815 72574 136020 182710 191470 186960 124640 198070 TRUE FALSE FALSE 143623.8526 158250.3953 128755.4537 168955.9397 118959.1033 160169.0979 143562.1808 144393.2893 135443.8956 148471.9828 0.967346498 1.065860321 0.867203706 1.137965133 0.801222568 1.078783316 0.966931122 0.972528868 0.912252218 1 17.17983119 -4.963811161 0.817808738 0.969102582 1.003390563 0.006858292 0.095615484 8.12511033 7.945748457 0.038153229 0.21212159 1.09E-05 4.963811161 0.034287981 AGVGMPR ddPTM_HeLa_A485_30min_R1 3 AGVGMPR 7 0 F8W9F9;H0Y7T5;Q9Y3S1-2;Q9Y3S1-4;Q9Y3S1;H0Y493;H0Y7R3 F8W9F9 WNK2 Serine/threonine-protein kinase WNK2 0 0 ;; ;; 68.64 0.0069144 0 428805 612910 557585 426623 579480 562640 642160 765630 502530 616300 FALSE FALSE TRUE 524191.1929 684584.4929 763858.8945 449928.3342 521784.9365 592098.9604 504957.27 577858.042 603383.1615 462667.7522 1.132975424 1.479646009 1.650987974 0.9724653 1.127774594 1.279749794 1.091403643 1.248969783 1.30413922 1 18.81961702 -5.266294053 24.9997179 1.159225205 1.42704742 0.387456923 0.157732545 429.6350286 2212458.467 0.044513019 0.068496888 5.42E-06 5.266294053 0.267822215 AGVGMPR ddPTM_HeLa_A486_30min_R1 1 AGVGMPR 7 0 F8W9F9;H0Y7T5;Q9Y3S1-2;Q9Y3S1-4;Q9Y3S1;H0Y493;H0Y7R3 F8W9F9 WNK2 Serine/threonine-protein kinase WNK2 0 0 63.671 0.0089068 0 189280 192580 179580 73099 217920 206490 200940 185970 200460 231840 FALSE FALSE TRUE 176012.4494 177319.2594 249118.1853 170178.1662 190586.4416 181015.3632 150662.6867 143628.6907 217836.0342 173785.755 1.012812871 1.020332532 1.433478741 0.979241171 1.096674705 1.041600695 0.866944973 0.826469872 1.253474626 1 17.40695031 -6.10347304 1.699136511 0.975788217 1.129639386 0.108647667 0.159064499 0.741210761 4.277867063 0.064582828 0.066105074 7.88E-07 6.10347304 0.15385117 AGVLAGHDNR ddPTM_HeLa_A485_30min_R1 1 AGVLAGHDNR 10 0 B3KVK2;E7EP32;P62879-2;P62873-2;Q9HAV0;P62879;P62873 B3KVK2 GNB1;GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein subunit beta-4 0 0 123.63 0.0037136 0 84003 123960 113010 87168 125760 128650 126110 148210 100010 133030 FALSE FALSE TRUE 102689.1775 138456.0437 154817.1017 91929.76712 113238.8928 135385.9151 99165.56828 111861.2651 120081.0897 99868.06924 1.028248351 1.386389511 1.55021623 0.92051211 1.133884871 1.355647667 0.99296571 1.120090395 1.202397228 1 16.60773586 -6.816788211 0.277413797 1.002850831 1.310646687 0.107139667 0.182558604 4.705876121 1.076485626 0.345300006 0.52925572 1.52E-07 6.816788211 0.307795857 AGVLAGHDNR ddPTM_HeLa_A486_30min_R1 1 AGVLAGHDNR 10 0 B3KVK2;E7EP32;P62879-2;P62873-2;Q9HAV0;P62879;P62873 B3KVK2 GNB1;GNB2;GNB4 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein subunit beta-4 0 0 127.4 0.0027596 0 51835 70393 64491 21566 95367 61311 70891 71407 71814 73138 FALSE FALSE TRUE 48201.63418 64814.80231 89463.64233 50206.73789 83405.1816 53747.07218 53153.32199 55149.1849 78038.89534 54823.76875 0.879210519 1.182239087 1.631840429 0.915784139 1.521332508 0.980360771 0.969530611 1.005935676 1.423450031 1 15.74251389 AGVLAHLEEER ddPTM_HeLa_A485_30min_R1 1 AGVLAHLEEER 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 165.11 1.98E-07 273960000 119140 163660 183670 142110 214040 147090 177040 176840 168670 186870 FALSE FALSE TRUE 145642.282 182798.6133 251617.1761 149873.1095 192729.4261 154791.405 139213.9577 133469.7127 202520.5219 140286.7481 1.038175622 1.303035503 1.793591908 1.068334048 1.373824889 1.103392922 0.992352874 0.95140642 1.443618336 1 17.09801921 -6.27350996 18.81789543 1.088503699 1.327546986 0.179699268 0.230882896 47.89939703 74671.29403 0.081220448 0.072634389 5.33E-07 6.27350996 0.239043287 AGVLAHLEEER ddPTM_HeLa_A486_30min_R1 2 AGVLAHLEEER 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 ; ; 166.93 1.71E-07 453630000 278950 303990 304540 112020 421270 269600 308650 333530 265730 304170 FALSE FALSE TRUE 259397.0455 279900.7253 422466.0439 260788.2212 368430.3884 236339.4931 231422.5054 257592.4999 288763.6904 228003.8522 1.137687118 1.227614019 1.852889939 1.143788663 1.615895455 1.036559211 1.01499384 1.129772578 1.266486016 1 17.79869867 -6.282139207 24.82355497 1.093012561 1.397662135 0.334703125 0.215680985 915.1185285 1097420.657 0.075428151 0.066596761 5.22E-07 6.282139207 0.304649574 AGVLEELGPWGDS(ph)LEETGAATGSR ddPTM_HeLa_A486_30min_R1 1 AGVLEELGPWGDSLEETGAATGSR 24 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 AGVLEELGPWGDS(0.779)LEET(0.22)GAAT(0.001)GSR 52.061 0.0056 0 6294.1 7261.4 6956.4 4222.6 10360 8161.3 10307 11721 9082.9 8528.2 TRUE FALSE FALSE 5852.916093 6685.980218 9650.104379 9830.426198 9060.552197 7154.441784 7728.079584 9052.384168 9870.213085 6392.683211 0.915564857 1.04588011 1.509554605 1.537762137 1.417331643 1.119161008 1.208894502 1.416053927 1.543985954 1 12.64220589 -4.61735999 5.462956485 1.354656666 0.946457593 0.415088175 0.174803793 0.178757357 8.064774448 0.046236662 0.128492357 2.41E-05 4.61735999 -0.408199073 AGVLT(ph)PPDLGPHPPPPAPR ddPTM_HeLa_A485_30min_R1 1 AGVLTPPDLGPHPPPPAPR 19 0 I3L2J0 I3L2J0 CIC 1 0 AGVLT(1)PPDLGPHPPPPAPR 52.483 0.0081798 0 225880 256070 212450 219770 366410 185760 181240 229320 179870 177980 TRUE FALSE FALSE 276126.2267 286015.159 291044.0958 231775.4786 329928.9339 195486.1064 142516.5934 173078.9104 215968.2591 133612.8615 2.066614124 2.140625953 2.178264072 1.734679402 2.469290233 1.463078511 1.066638285 1.295376123 1.61637328 1 17.02769936 -6.422586907 5.536541495 1.268212165 2.098075856 0.772137831 0.227340529 0.108166933 4.84869528 0.078762343 0.068772387 3.78E-07 6.422586907 0.829863691 AGVRPS(ph)SSGSAWEACSEAPSK ddPTM_HeLa_A486_30min_R1 2 AGVRPSSSGSAWEACSEAPSK 21 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 AGVRPS(0.25)S(0.25)S(0.25)GS(0.25)AWEACSEAPSK;AGVRPS(0.25)S(0.25)S(0.25)GS(0.25)AWEACS(0.001)EAPSK ; 87.339 0.00063973 256600000 111267 122204 94162 84164 117468 152441 167922 174937 112782 223300 TRUE FALSE FALSE 103467.7579 112520.11 130624.0481 195938.0454 102734.0681 133634.3793 125906.1395 135107.6639 122558.0346 167384.2266 0.61814521 0.672226483 0.780384453 1.170588468 0.613761943 0.79836901 0.752198353 0.807170823 0.732195841 1 17.35280406 -11.71607272 2.024937088 7.276707017 0.777347679 0.1737117 0.148931608 8592051.517 226344.5997 249393207.7 0.037992605 1.92E-12 11.71607272 -6.499359338 AGVVGPELHEQLLSAEK ddPTM_HeLa_A485_30min_R1 1 AGVVGPELHEQLLSAEK 17 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 62.709 0.018938 6385200 17855 13062 14749 22375 23275 13431 18972 15279 14437 36355 FALSE FALSE TRUE 21826.78315 14589.48728 20205.26886 23597.28959 20957.65928 14134.22639 14918.47721 11531.80129 17334.37348 27292.36756 0.799739455 0.534562904 0.740326716 0.864611307 0.767894512 0.517882018 0.546617188 0.422528433 0.635136305 1 14.73620993 -10.39688518 5.87577974 1.000101898 0.643597635 0.377341281 0.135674214 0.000198674 2.04E-05 0.144108445 0.034941509 4.01E-11 10.39688518 -0.356504263 AGVVNGTGAPGQS(ph)PGAGR ddPTM_HeLa_A485_30min_R1 2 AGVVNGTGAPGQSPGAGR 18 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;Q13330-2 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 AGVVNGTGAPGQS(1)PGAGR;AGVVNGTGAPGQS(1)PGAGR ; 340.33 5.47E-102 599520000 207867 293900 318180 226200 379020 288540 305150 378810 257610 296260 TRUE FALSE FALSE 254106.297 328269.0484 435888.0226 238556.7332 341283.438 303647.5082 239952.2097 285906.2535 309309.9641 222407.8343 1.142524039 1.475977901 1.959859121 1.072609398 1.534493779 1.365273437 1.078883801 1.285504418 1.390733223 1 17.76284808 -6.55543688 8.13714781 1.213210158 1.448312168 0.182841691 0.245925085 0.431871497 92.81187442 0.09386511 0.073015649 2.78E-07 6.55543688 0.235102009 AGVVNGTGAPGQS(ph)PGAGR ddPTM_HeLa_A486_30min_R1 1 AGVVNGTGAPGQSPGAGR 18 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;Q13330-2 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 AGVVNGTGAPGQS(1)PGAGR 200.45 3.52E-25 353550000 144450 151350 133050 44544 182230 132960 155730 154790 138370 136150 TRUE FALSE FALSE 134324.8009 139356.4748 184570.5232 103700.6831 159373.0142 116556.747 116764.7069 119547.696 150364.023 102057.1538 1.31617232 1.36547483 1.808501573 1.016104009 1.561605514 1.142073267 1.144110947 1.171379875 1.473331534 1 16.63901779 -5.951439749 1.227848549 1.200537237 1.441779608 0.171687443 0.222557662 0.83367381 2.638584638 0.095178726 0.113901449 1.12E-06 5.951439749 0.241242371 AGWGS(ph)PCHLSGESVILLGPTVGTESK ddPTM_HeLa_A485_30min_R1 4 AGWGSPCHLSGESVILLGPTVGTESK 26 0 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2;A8MXE8;Q7Z5J4-4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 AGWGS(0.943)PCHLS(0.057)GESVILLGPTVGTESK;AGWGS(0.969)PCHLS(0.031)GESVILLGPTVGTESK;AGWGS(0.716)PCHLS(0.252)GES(0.033)VILLGPTVGTESK;AGWGS(0.995)PCHLS(0.005)GESVILLGPTVGTESK ;;; 219.93 3.15E-38 653067000 533598 907150 816101 243903 1058710 618487 771428 812350 656140 534899 TRUE FALSE FALSE 652295.0342 1013233.301 1118010.721 257226.8033 953301.115 650870.023 606606.1058 613119.8888 787821.2795 401558.5234 1.624408389 2.523251886 2.784178782 0.640571145 2.37400294 1.620859688 1.510629386 1.526850641 1.961908996 1 18.61525074 -6.292770542 0.076742964 3.93E-09 3.588583887 0.191131933 0.571235906 63.72993476 2.048718351 37.59879747 55.73190034 5.10E-07 6.292770542 3.588583883 AGWGS(ph)PCHLSGESVILLGPTVGTESK ddPTM_HeLa_A486_30min_R1 1 AGWGSPCHLSGESVILLGPTVGTESK 26 0 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2;A8MXE8;Q7Z5J4-4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 AGWGS(0.987)PCHLS(0.013)GESVILLGPTVGTESK 156.27 1.11E-09 167030000 236210 244000 193910 19678 264830 168730 194010 179280 234560 77792 TRUE FALSE FALSE 219652.8988 224664.5514 268997.1451 45811.37847 231612.552 147913.8081 145466.646 138461.8577 254891.8497 58312.37686 3.766831514 3.852776434 4.613036881 0.785620154 3.971927821 2.536576557 2.494610129 2.374484888 4.371144916 1 15.83151451 -5.211200708 24.999994 2.62419118 4.055071389 0.308616703 1.068117131 470.7927292 234277.1702 0.273490876 0.47369931 6.15E-06 5.211200708 1.430880209 AGWGSPCHLS(ph)GESVILLGPTVGTESK ddPTM_HeLa_A486_30min_R1 1 AGWGSPCHLSGESVILLGPTVGTESK 26 0 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2;A8MXE8;Q7Z5J4-4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 AGWGS(0.453)PCHLS(0.498)GES(0.049)VILLGPTVGTESK 78.067 0.0059204 73673000 28515 29537 22462 4541.4 35915 21798 25300 24470 25772 14193 TRUE FALSE FALSE 26516.24575 27196.38055 31159.88795 10572.60871 31410.20581 19108.78439 18969.6724 18898.71518 28005.93771 10638.98042 2.492367192 2.556295761 2.928841555 0.99376146 2.952369923 1.796110495 1.783034808 1.776365256 2.632389252 1 13.37707228 -9.34120717 0.115223687 2.41E-17 3.100424081 0.284106686 0.585565969 42.17573148 1.325017313 26.0111124 9.938933824 4.56E-10 9.34120717 3.100424081 AGYLSDGDS(ph)PERPAGPPS(ph)PTSFRPYEVGPAAR ddPTM_HeLa_A485_30min_R1 1 AGYLSDGDSPERPAGPPSPTSFRPYEVGPAAR 32 2 Q6ZW31;Q6ZW31-2 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 2 0 AGYLS(0.001)DGDS(0.998)PERPAGPPS(0.813)PT(0.096)S(0.088)FRPY(0.004)EVGPAAR 92.732 0.00082316 172210000 37039 49865 52719 43656 64976 55044 64770 66220 52154 62863 TRUE FALSE FALSE 45278.19777 55696.27798 72221.95192 46040.81674 58506.7613 57926.01873 50931.36038 49979.44117 62620.82942 47192.41101 0.959438113 1.180195646 1.530372159 0.975597893 1.239749359 1.227443512 1.079227768 1.059056745 1.326925836 1 15.52626726 AGYLSDGDS(ph)PERPAGPPSPTSFRPYEVGPAAR ddPTM_HeLa_A486_30min_R1 1 AGYLSDGDSPERPAGPPSPTSFRPYEVGPAAR 32 2 Q6ZW31;Q6ZW31-2 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 1 0 AGYLS(0.001)DGDS(0.999)PERPAGPPSPTSFRPYEVGPAAR 118.98 1.35E-05 148840000 51295 67719 55521 17307 67706 49758 64489 71839 56938 61176 TRUE FALSE FALSE 47699.48539 62352.69981 77020.2181 40291.57065 59213.68215 43619.36386 48353.1701 55482.82793 61873.43168 45857.13141 1.040175953 1.359716535 1.679569038 0.878632601 1.291264419 0.951201319 1.054430764 1.209906207 1.349265202 1 15.48485849 -5.273984461 24.99495183 1.112954359 1.359810139 0.254288605 0.199675549 1077.677475 2147173.609 0.056351088 0.084231252 5.32E-06 5.273984461 0.246855781 AGYTDKVVIGMDVAASEFFR ddPTM_HeLa_A485_30min_R1 5 AGYTDKVVIGMDVAASEFFR 20 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;;; ;;;; 142.99 3.14E-09 908860000 148129.6 200875.1 151458.1 120476.4 184063 214870.1 261455 430867 134195.8 194327 FALSE FALSE TRUE 181080.5185 224365.6956 207488.7539 127057.7207 165737.0414 226120.3662 205593.0034 325196.1927 161127.6661 145884.8552 1.241256457 1.537964275 1.422277546 0.870945243 1.1360812 1.549992053 1.409282705 2.229129214 1.104485218 1 17.15447059 -6.273922606 23.82217138 1.532317505 1.247597847 0.068001109 0.351648681 876.0725288 1671833.141 0.12256944 0.108934661 5.32E-07 6.273922606 -0.284719658 AGYTDKVVIGMDVAASEFFR ddPTM_HeLa_A486_30min_R1 3 AGYTDKVVIGMDVAASEFFR 20 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;; ;; 185.27 6.39E-19 746678000 182481 173495 133134 171923 254016 184261 247505 218778 161137 259239 FALSE FALSE TRUE 169690.0242 159746.6243 184687.0503 400245.4325 222154.9447 161528.7512 185576.6312 168967.0253 175104.4849 194323.867 0.873233056 0.82206384 0.950408476 2.059682316 1.143220069 0.831234751 0.954986302 0.869512468 0.901096132 1 17.56810358 -6.194198041 6.75953657 0.906327763 1.189437588 0.134118075 0.3269462 0.558955723 47.22382002 0.118420401 0.118214737 6.39E-07 6.194198041 0.283109825 AHAASVFLTLLHFDSPPIPHVPHR ddPTM_HeLa_A486_30min_R1 2 AHAASVFLTLLHFDSPPIPHVPHR 24 0 J3KR97;Q9BTW9;Q9BTW9-4;I3L120;A0A0J9YXU4;A0A0J9YWI5;A0A0J9YVR1 J3KR97 TBCD Tubulin-specific chaperone D 0 0 ; ; 95.206 3.92E-05 7593900 2670.4 1956.88 1985.76 933.94 3402.1 2060.5 2255.8 2419.8 1770.97 2310.9 FALSE FALSE TRUE 2483.21875 1801.809702 2754.699452 2174.259519 2975.376895 1806.29646 1691.374981 1868.864364 1924.479106 1732.235599 1.433534071 1.040164342 1.590256807 1.255175405 1.717651396 1.042754497 0.976411628 1.078874239 1.11098 1 10.75841945 -6.334755831 21.83635337 1.042643319 1.388663368 0.523615501 0.173880624 34.71469539 10338.64036 0.059380646 0.052368819 4.63E-07 6.334755831 0.34602005 AHAS(ph)PFSGALTPSAPPGPEMNR ddPTM_HeLa_A486_30min_R1 1 AHASPFSGALTPSAPPGPEMNR 22 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 AHAS(0.998)PFS(0.002)GALTPSAPPGPEMNR 135.25 7.41E-07 399310000 156350 188500 163010 43411 233480 153840 145660 172190 132130 141050 TRUE FALSE FALSE 145390.6724 173562.5735 226131.8376 101063.0019 204194.7613 134860.7849 109214.3274 132986.0959 143583.1348 105730.1619 1.375110657 1.641561597 2.13876375 0.955857818 1.931282026 1.27551857 1.032953373 1.257787688 1.358014895 1 16.69002747 -6.498504492 21.88204888 1.179466182 1.603535841 0.32313551 0.309626442 192.7310342 173025.328 0.106285167 0.093047343 3.17E-07 6.498504492 0.424069659 AHAWPS(ph)PYKDYEVK ddPTM_HeLa_A485_30min_R1 4 AHAWPSPYKDYEVK 14 1 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 AHAWPS(1)PYKDYEVK;AHAWPS(1)PYKDYEVK;AHAWPS(1)PYKDYEVK;AHAWPS(1)PYKDYEVK ;;; 151.57 2.94E-08 2788860000 3512970 1926410 778477 5554490 1825130 2445430 4576230 3571120 1671090 10449040 TRUE FALSE FALSE 4294418.057 2151686.892 1066468.037 5857917.724 1643413.649 2573468.933 3598481.076 2695297.221 2006462.435 7844286.628 0.547458075 0.274299881 0.135954751 0.746775074 0.209504538 0.328069212 0.458739111 0.343600043 0.255786476 1 22.90321082 -10.51852348 2.820989499 1.027821114 0.36463247 0.557522011 0.16925102 24284482.2 25753588.39 5187431.646 0.042035442 3.03E-11 10.51852348 -0.663188644 AHAWPS(ph)PYKDYEVK ddPTM_HeLa_A486_30min_R1 3 AHAWPSPYKDYEVK 14 1 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 AHAWPS(1)PYKDYEVK;AHAWPS(1)PYKDYEVK;AHAWPS(1)PYKDYEVK ;; 137.45 4.30E-06 1824670000 2496810 2372520 1071630 1480560 2354090 3804400 3792020 3209390 2328990 5599500 TRUE FALSE FALSE 2321796.513 2184512.875 1486593.835 3446818.503 2058818.081 3335051.808 2843216.488 2478681.957 2530868.728 4197348.753 0.553157874 0.520450647 0.354174486 0.821189447 0.490504412 0.794561521 0.677383905 0.590535146 0.602968416 1 22.00104691 -14 0.136652983 2.312784469 0.456072516 0.486724384 0.127639831 123.3770637 1.041986448 44.47483254 0.843305142 1.00E-14 14 -1.856711953 AHAWPS(ph)PYKDYEVKK ddPTM_HeLa_A485_30min_R1 1 AHAWPSPYKDYEVKK 15 2 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 AHAWPS(0.999)PY(0.001)KDYEVKK 116.06 5.48E-05 427810000 611670 318940 172030 827950 327820 559810 975000 847170 320310 1908600 TRUE FALSE FALSE 747733.8813 356237.2586 235671.0558 873178.812 295181.0898 589120.786 766683.285 639400.2292 384593.2789 1432821.145 0.521861283 0.248626467 0.164480442 0.609412288 0.206013912 0.411161426 0.535086523 0.446252647 0.268416809 1 20.4504271 -14 0.366809589 9.008709316 0.361790378 0.617733615 0.145738558 340.7598028 2.667658927 2160.111879 0.103407295 1.00E-14 14 -8.646918939 AHAWPS(ph)PYKDYEVKK ddPTM_HeLa_A486_30min_R1 2 AHAWPSPYKDYEVKK 15 2 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 AHAWPS(1)PYKDYEVKK;AHAWPS(1)PYKDYEVKK ; 137.14 2.83E-06 2143040000 483670 363460 165850 326430 428210 703980 742940 678720 382490 1231800 TRUE FALSE FALSE 449767.2307 334658.1059 230071.5616 759945.5369 374499.9089 617130.1051 557048.554 524190.2724 415644.5412 923349.2623 0.487104121 0.362439349 0.249170678 0.823031509 0.405588572 0.668360425 0.603291275 0.567705303 0.450148777 1 19.81651693 -14 0.156807702 2.719466502 0.383136206 0.482266985 0.153195722 117.8182856 1.071916201 63.42676884 0.69272789 1.00E-14 14 -2.336330296 AHEEQDEES(ph)QDNLFSSDR ddPTM_HeLa_A485_30min_R1 1 AHEEQDEESQDNLFSSDR 18 0 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 AHEEQDEES(1)QDNLFSSDR 156.23 2.40E-11 0 48776 50176 54835 57164 65784 40523 67660 72221 50474 94391 TRUE FALSE FALSE 59626.05292 56043.64673 75120.74837 60286.72457 59234.31398 42644.72162 53203.88827 54508.68651 60603.66883 70861.06084 0.841450187 0.790894831 1.060113234 0.850773667 0.835921919 0.601807553 0.75081981 0.769233284 0.855246423 1 16.11270544 -3.883552948 16.79071813 0.824866063 2.338771847 0 0.121332818 2078.03178 308135.1262 0.030798874 3411.670485 0.000130752 3.883552948 1.513905784 AHEEQDEES(ph)QDNLFSSDR ddPTM_HeLa_A486_30min_R1 2 AHEEQDEESQDNLFSSDR 18 0 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 AHEEQDEES(1)QDNLFSSDR;AHEEQDEES(1)QDNLFSSDR ; 198.55 2.90E-25 262650000 77099 89076 57703 37257 109283 81943 88559 98505 78451 112210 TRUE FALSE FALSE 71694.75824 82017.29335 80047.14694 86736.17886 95575.70712 71833.7058 66400.60152 76077.56185 85251.19585 84111.88564 0.852373689 0.975097547 0.951674622 1.031200029 1.136292527 0.854025626 0.78943185 0.904480518 1.013545175 1 16.36002206 AHFNAMFQPS(ph)SPTR ddPTM_HeLa_A485_30min_R1 1 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.666)S(0.322)PT(0.012)R 85.636 0.0010186 205930000 75802 77538 89380 93199 103280 85030 105250 107810 92479 126280 TRUE FALSE FALSE 92663.89339 86605.39461 122445.3814 98290.22538 92997.08056 89482.03932 82762.47769 81369.42846 111038.687 94800.72001 0.977459806 0.913552076 1.291608138 1.036808849 0.980974412 0.943896199 0.873015286 0.858320785 1.171285271 1 16.5326104 -5.776945773 3.909795511 0.956078928 1.063165992 0.097829387 0.121339269 0.460221233 15.42472847 0.039099834 0.047551809 1.67E-06 5.776945773 0.107087064 AHFNAMFQPS(ph)SPTR ddPTM_HeLa_A486_30min_R1 3 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.381)S(0.305)PT(0.314)R;AHFNAMFQPS(0.637)S(0.306)PT(0.057)R;AHFNAMFQPS(0.586)S(0.401)PT(0.013)R ;; 96.993 0.00010577 0 320155 352227 296846 130653 390819 339663 376552 371306 298464 392803 TRUE FALSE FALSE 297713.7878 324315.2497 411792.721 304166.7868 341798.8368 297758.8325 282334.7068 286767.7294 324335.0998 294442.5721 1.01110986 1.101455022 1.39855021 1.033025845 1.16083362 1.011262843 0.958878687 0.973934331 1.101522438 1 18.16762675 -6.267824603 19.78440702 1.004350308 1.147108618 0.282785252 0.104646058 38.68266629 119853.3605 0.037022991 0.033651073 5.40E-07 6.267824603 0.14275831 AHFNAMFQPSS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.205)S(0.718)PT(0.076)R;AHFNAMFQPS(0.008)S(0.989)PT(0.003)R;AHFNAMFQPS(0.032)S(0.965)PT(0.002)R ;; 244.86 1.71E-35 2116140000 856600 999420 1030120 962640 1188520 877580 1034340 923930 934700 1313210 TRUE FALSE FALSE 1047147.715 1116293.475 1411204.255 1015226.586 1070186.776 923528.7318 813344.8092 697334.7188 1122285.716 985850.9148 1.062176541 1.132314692 1.431458077 1.029797275 1.085546262 0.936783359 0.82501806 0.707342975 1.138392935 1 19.91100997 -5.992935056 1.685095528 0.894209696 1.190999004 0.391202627 0.144501551 0.346867258 2.00033916 0.05617845 0.062497755 1.02E-06 5.992935056 0.296789309 AHFNAMFQPSS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.404)S(0.556)PT(0.04)R;AHFNAMFQPS(0.003)S(0.995)PT(0.003)R;AHFNAMFQPS(0.007)S(0.681)PT(0.313)R ;; 269.55 1.36E-42 3020650000 1366960 1660630 1507390 421086 1721510 1566880 1581750 1635030 1507260 1517970 TRUE FALSE FALSE 1271143.163 1529035.631 2091091.777 980309.4885 1505582.163 1373574.276 1185979.42 1262769.361 1637910.51 1137860.432 1.117134516 1.343781353 1.83774013 0.86153755 1.323169452 1.207155323 1.042289007 1.109775264 1.439465215 1 20.11789218 -5.278482859 24.99931003 1.151356879 1.42397502 0.260011613 0.225377961 1156.830836 1696832.504 0.062955724 0.093641698 5.27E-06 5.278482859 0.272618141 AHFNAMFQPSS(ph)PTRRPGFS(ph)PTSHR ddPTM_HeLa_A485_30min_R1 2 AHFNAMFQPSSPTRRPGFSPTSHR 24 2 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 2 0 AHFNAMFQPS(0.138)S(0.856)PT(0.071)RRPGFS(0.913)PT(0.018)S(0.003)HR;AHFNAMFQPS(0.165)S(0.814)PT(0.022)RRPGFS(0.994)PT(0.005)S(0.001)HR ; 167.97 2.65E-14 1405260000 144927 214943 216510 111299 271960 257270 248740 339680 168435 172289 TRUE FALSE FALSE 177165.5112 240078.7141 296606.0587 117378.9825 244882.7075 270740.2594 195594.667 256372.9474 202238.3595 129340.523 1.369760281 1.856175531 2.293218334 0.907519003 1.893317745 2.093236157 1.512245833 1.982154868 1.563611734 1 16.98081482 -8.02250001 21.93408104 0.999999981 1.744511395 0.258919404 0.375328769 485.9987661 473776.3932 0.352572933 0.09103394 9.50E-09 8.02250001 0.744511414 AHFNAMFQPSS(ph)PTRRPGFS(ph)PTSHR ddPTM_HeLa_A486_30min_R1 1 AHFNAMFQPSSPTRRPGFSPTSHR 24 2 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 2 0 AHFNAMFQPS(0.12)S(0.546)PT(0.334)RRPGFS(0.986)PT(0.006)S(0.008)HR 144.68 2.30E-09 592390000 103270 148320 143200 111020 192710 150950 203530 245310 129700 195930 TRUE FALSE FALSE 96031.30629 136566.583 198650.875 258460.1706 168538.5149 132327.3237 152604.6413 189458.2681 140942.5004 146867.8527 0.653861989 0.929860283 1.352582416 1.759814458 1.147552114 0.900995836 1.039060887 1.289991408 0.959655213 1 17.16415912 -6.008793008 24.918611 1.052594998 1.204885346 0.045856739 0.282834376 1487.226926 4214681.284 0.099394981 0.107179198 9.80E-07 6.008793008 0.152290348 AHFNAMFQPSS(ph)PTRRPGFSPTSHR ddPTM_HeLa_A485_30min_R1 2 AHFNAMFQPSSPTRRPGFSPTSHR 24 2 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.204)S(0.794)PT(0.002)RRPGFSPTSHR;AHFNAMFQPS(0.044)S(0.951)PT(0.003)RRPGFSPT(0.001)S(0.001)HR ; 250.05 5.48E-50 5888900000 389070 812300 796140 234500 846470 738060 897870 1255800 538870 484070 TRUE FALSE FALSE 475617.2792 907291.4189 1090665.316 247310.1412 762192.4747 776703.6803 706032.7396 947813.081 647016.2662 363400.2576 1.308797309 2.49667247 3.001278324 0.68054476 2.097391123 2.137322866 1.942851511 2.608179441 1.780450764 1 18.47119992 -8.020030663 23.14007631 0.999999941 2.048868913 0.200120205 0.621439872 887.6900452 1025489.981 0.593379321 0.153209882 9.55E-09 8.020030663 1.048868972 AHFNAMFQPSS(ph)PTRRPGFSPTSHR ddPTM_HeLa_A486_30min_R1 2 AHFNAMFQPSSPTRRPGFSPTSHR 24 2 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.008)S(0.991)PT(0.001)RRPGFSPTSHR;AHFNAMFQPS(0.195)S(0.742)PT(0.059)RRPGFS(0.001)PT(0.001)S(0.002)HR ; 213.05 1.06E-29 3402400000 588900 475610 627240 49179 814840 425430 545730 611050 447930 424320 TRUE FALSE FALSE 547621.1511 437920.9315 870124.1261 114491.1974 712635.1691 372944.7721 409182.5819 471927.2541 486756.9331 318067.5101 1.721713578 1.376817554 2.735658621 0.359958794 2.240515445 1.172533378 1.286464567 1.483732978 1.530357291 1 18.27897349 -3.259357503 0.050367406 2.73E-09 3.64902104 0.097716448 0.588807332 766.5018791 4.603001005 101.2760406 263.8868222 0.000550354 3.259357503 3.649021038 AHGCFQDGRS(ph)PGPPPPVGVK ddPTM_HeLa_A485_30min_R1 1 AHGCFQDGRSPGPPPPVGVK 20 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 AHGCFQDGRS(1)PGPPPPVGVK 107.08 2.03E-05 88436000 66459 126890 97554 65238 212970 159960 193670 332930 102940 123780 TRUE FALSE FALSE 81242.57527 141728.6817 133643.2842 68801.78675 191765.959 168335.2583 152290.8224 251278.3955 123599.1138 92923.924 0.874291267 1.525211976 1.43820104 0.74040983 2.0636877 1.811538418 1.63887636 2.704130268 1.330110788 1 16.50376246 -5.774260388 24.99985576 1.839978814 1.192696748 0.272429081 0.477532142 278.2277689 542518.1835 0.141606999 0.161581595 1.68E-06 5.774260388 -0.647282065 AHGCFQDGRS(ph)PGPPPPVGVK ddPTM_HeLa_A486_30min_R1 1 AHGCFQDGRSPGPPPPVGVK 20 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 AHGCFQDGRS(1)PGPPPPVGVK 131.37 2.50E-07 138490000 110160 115930 131530 75719 275130 129150 189510 230100 94107 124490 TRUE FALSE FALSE 102438.3529 106743.2846 182461.9385 176277.6586 240620.6299 113216.7861 142092.5936 177711.253 102264.2705 93316.89371 1.097747137 1.143879531 1.955293744 1.88902193 2.578532357 1.213250695 1.52268885 1.904384576 1.09588164 1 16.50985066 -7.837892959 6.708890925 1.020892495 1.673234772 0.246869574 0.429906252 0.341747003 23.57338907 0.436747634 0.113748104 1.45E-08 7.837892959 0.652342277 AHGELHEQFK(ac)R ddPTM_HeLa_A485_30min_R1 2 AHGELHEQFKR 11 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 0 1 ; AHGELHEQFK(1)R;AHGELHEQFK(1)R 115.14 0.00079629 56163000 12320.8 20155.3 19234.5 14627.3 19815.4 16246.8 20850.7 20384.9 15621.1 16477.5 FALSE TRUE FALSE 15061.51945 22512.28701 26350.14196 15426.35236 17842.5092 17097.45733 16395.77761 15385.47131 18756.11148 12369.9625 1.217588126 1.819915543 2.130171532 1.247081579 1.442406087 1.382175357 1.325450875 1.243776715 1.516262599 1 13.59455351 -5.298145808 24.98768437 1.327719481 1.732294419 0.372099084 0.245667952 589.6427477 401394.5404 0.068412397 0.101475368 5.03E-06 5.298145808 0.404574938 AHGELHEQFK(ac)R ddPTM_HeLa_A486_30min_R1 2 AHGELHEQFKR 11 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 0 1 ; AHGELHEQFK(1)R;AHGELHEQFK(1)R 115.14 0.00079629 47696000 17620.4 18473.5 19242.1 7621.4 23427 18991.2 18713 22346.5 16813.1 19523.7 FALSE TRUE FALSE 16385.30095 17009.59258 26693.15644 17743.00436 20488.56721 16648.25883 14030.80947 17258.68977 18270.47305 14634.83844 1.119609281 1.162267192 1.823946096 1.212381294 1.399985883 1.13757722 0.958726639 1.179288028 1.248423282 1 13.8371192 -6.32226706 5.717632975 1.104409928 1.352844364 0.265963436 0.198420677 0.321344535 21.85809271 0.072522976 0.064160249 4.76E-07 6.32226706 0.248434435 AHGLSLIPSTGLCS(ph)PDLVNR ddPTM_HeLa_A485_30min_R1 2 AHGLSLIPSTGLCSPDLVNR 20 0 O75030-11;O75030-10;O75030-9;O75030-12;O75030-4;O75030-3;O75030-8;O75030-7;O75030-6;O75030-2;O75030-5;O75030 O75030-11 MITF Microphthalmia-associated transcription factor 1 0 AHGLSLIPSTGLCS(1)PDLVNR;AHGLSLIPSTGLCS(1)PDLVNR ; 120.82 3.79E-06 308950000 144983 199422 205420 148589 269985 161170 216426 229065 204755 191323 TRUE FALSE FALSE 177233.9682 222742.6682 281413.4062 156706.0408 243104.3454 169608.612 170184.8171 172886.4496 245847.4504 143629.6971 1.233964644 1.550812072 1.959298194 1.091042061 1.692577164 1.180874258 1.184885998 1.203695705 1.711675616 1 17.13199455 -6.276446041 24.63649727 1.264498525 1.510235273 0.166512757 0.278488058 1306.403223 2144721.256 0.096298556 0.085276693 5.29E-07 6.276446041 0.245736748 AHGS(ph)FSHVR ddPTM_HeLa_A485_30min_R1 3 AHGSFSHVR 9 0 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AHGS(0.913)FS(0.087)HVR;AHGS(0.992)FS(0.008)HVR;AHGS(0.994)FS(0.006)HVR ;; 170.89 4.24E-06 1376070000 197725 241359 260505 188917 293857 217859 310539 365082 295261 329886 TRUE FALSE FALSE 241708.2441 269583.8355 356876.64 199237.0573 264599.5653 229265.7604 244189.8058 275545.0671 354517.1744 247651.4913 0.976001569 1.088561325 1.441043775 0.804505785 1.068435178 0.92575966 0.986021948 1.112632376 1.431516413 1 17.91795178 -10.21288643 5.489991227 0.999995887 1.086188063 0.019309906 0.193248761 9.76E-06 1.40E-06 0.187633354 0.045505601 6.13E-11 10.21288643 0.086192176 AHGS(ph)FSHVR ddPTM_HeLa_A486_30min_R1 4 AHGSFSHVR 9 0 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AHGS(0.993)FS(0.007)HVR;AHGS(0.99)FS(0.01)HVR;AHGS(0.96)FS(0.04)HVR;AHGS(0.928)FS(0.072)HVR ;;; 154.29 3.45E-05 2355760000 577039 575179 465929 111809 590041 523394 563711 724623 506339 530147 TRUE FALSE FALSE 536591.5459 529599.7213 646349.1868 260297.0025 516032.5559 458822.9698 422664.5455 559642.1613 550228.8722 397394.7405 1.350273396 1.332679241 1.626466384 0.655008675 1.298538967 1.154577358 1.063588675 1.408277726 1.384590223 1 18.60021325 AHHGEAGHHLPEPS(ph)SR ddPTM_HeLa_A485_30min_R1 1 AHHGEAGHHLPEPSSR 16 0 O76061 O76061 STC2 Stanniocalcin-2 1 0 AHHGEAGHHLPEPS(0.5)S(0.5)R 58.49 0.020771 159130000 36640 44399 38188 22902 31078 26763 29288 33854 28138 31197 TRUE FALSE FALSE 44790.44159 49591.07683 52315.33034 24153.07827 27983.7652 28164.2693 23030.37954 25551.25342 33785.0385 23420.16204 1.912473599 2.117452337 2.233773201 1.031294243 1.194857882 1.202565091 0.983356968 1.090993879 1.442562116 1 14.51546344 -5.262765292 24.99999594 1.137860995 2.09085501 0.900918956 0.14479685 32.40448326 610989.1923 0.040071624 0.063350567 5.46E-06 5.262765292 0.952994015 AHHMHLS(ph)PMEAILVSR ddPTM_HeLa_A485_30min_R1 1 AHHMHLSPMEAILVSR 16 0 Q96T17-2 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 AHHMHLS(1)PMEAILVSR 68.567 0.0064615 43713000 54760 66227 53981 43447 76177 43694 42007 46209 38604 47185 TRUE FALSE FALSE 66941.17308 73971.67155 73950.81824 45820.3996 68592.55041 45981.75028 33031.86128 34876.1703 46351.4687 35422.64788 1.889784561 2.088259235 2.087670535 1.293534006 1.936403813 1.29808902 0.932506836 0.98457265 1.308526366 1 15.11238444 -6.065807411 0.881942964 1.023307489 2.012740694 0.720424805 0.235770618 0.314771581 0.5361984 0.137977418 0.157949532 8.59E-07 6.065807411 0.989433205 AHIAQLCEK ddPTM_HeLa_A485_30min_R1 1 AHIAQLCEK 9 0 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 89.247 0.013068 23859000 61670 65713 77622 88350 94410 58580 86956 80440 90468 125540 FALSE FALSE TRUE 75388.27874 73397.56372 106337.6079 93176.33679 85010.20891 61647.15822 68377.14023 60711.96387 108624.0978 94245.18839 0.799916473 0.77879375 1.128308084 0.98865882 0.90201113 0.654114648 0.725523938 0.644191655 1.152569162 1 16.52413134 -6.022569828 24.09407695 0.803057741 0.930300221 0.041256803 0.172321046 1163.34129 1241905.517 0.057309905 0.057781302 9.49E-07 6.022569828 0.12724248 AHIVFDFHQAADGIQEQQR ddPTM_HeLa_A485_30min_R1 1 AHIVFDFHQAADGIQEQQR 19 0 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 0 139.11 6.89E-10 16120000 13091 12823 16456 17551 23825 11736 16239 15375 13601 23340 FALSE FALSE TRUE 16003.04779 14322.5383 22543.75919 18509.76669 21452.89935 12350.47881 12769.40499 11604.25714 16330.59594 17521.76754 0.913323827 0.817414012 1.286614443 1.056386957 1.224357034 0.704864894 0.728773793 0.662276629 0.932017612 1 14.0968607 -6.273207367 24.97907551 0.779678068 1.058594683 0.384882132 0.158892184 757.0349664 1606900.17 0.056971753 0.050642997 5.33E-07 6.273207367 0.278916615 AHLDHIPDYTPPLLTT(ph)ISPEQESDER ddPTM_HeLa_A486_30min_R1 1 AHLDHIPDYTPPLLTTISPEQESDER 26 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLT(0.145)T(0.764)IS(0.067)PEQES(0.023)DER 103.95 0.00090333 186020000 29079 46641 37105 14655 51319 34179 39920 54817 36048 35133 TRUE FALSE FALSE 27040.71226 42944.9973 51473.04971 34117.58062 44882.09249 29962.34249 29931.59377 42336.36575 39172.66966 26335.46812 1.026779252 1.630690485 1.954514325 1.295499304 1.704245099 1.137718242 1.136550664 1.607579768 1.48744915 1 14.68471948 -6.261283696 24.99997488 1.303251498 1.539771636 0.155951801 0.283523514 30.44507471 4889150.936 0.098372449 0.092495188 5.48E-07 6.261283696 0.236520138 AHLDHIPDYTPPLLTTIS(ph)PEQESDER ddPTM_HeLa_A485_30min_R1 4 AHLDHIPDYTPPLLTTISPEQESDER 26 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLTTIS(1)PEQESDER;AHLDHIPDYTPPLLT(0.001)T(0.011)IS(0.988)PEQESDER;AHLDHIPDYTPPLLTT(0.009)IS(0.991)PEQESDER;AHLDHIPDYTPPLLTT(0.008)IS(0.992)PEQESDER ;;; 245.28 7.81E-50 1630010000 222186 317510 304960 231624 368777 297941 335715 410482 298341 305684 TRUE FALSE FALSE 271610.5092 354640.0325 417777.3944 244277.0326 332060.267 313540.7301 263986.7477 309810.6459 358215.3022 229482.6045 1.183577769 1.545389609 1.820518794 1.064468626 1.446995374 1.366294106 1.150356247 1.350039784 1.560969307 1 17.80802527 -5.272503666 24.99791393 1.297127342 1.519384832 0.200879955 0.21627243 1218.647718 2753329.858 0.060193807 0.090236334 5.34E-06 5.272503666 0.22225749 AHLDHIPDYTPPLLTTIS(ph)PEQESDER ddPTM_HeLa_A486_30min_R1 4 AHLDHIPDYTPPLLTTISPEQESDER 26 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLTT(0.01)IS(0.99)PEQESDER;AHLDHIPDYTPPLLTT(0.001)IS(0.999)PEQESDER;AHLDHIPDYTPPLLTT(0.001)IS(0.999)PEQESDER;AHLDHIPDYTPPLLTT(0.001)IS(0.999)PEQESDER ;;; 253.26 4.56E-62 1288270000 297802 331462 279787 108375 398121 292535 329108 357216 267748 314698 TRUE FALSE FALSE 276927.6177 305195.744 388128.0194 252302.477 348184.9518 256445.006 246761.6975 275885.7148 290956.6122 235895.5725 1.173941566 1.293774787 1.645338297 1.069551558 1.476013086 1.087112417 1.046063285 1.169524768 1.233412773 1 17.84778882 -6.28231371 24.78539112 1.113995465 1.332473478 0.334768223 0.158089332 901.7061373 1070647.996 0.054608476 0.048212669 5.22E-07 6.28231371 0.218478013 AHLDHIPDYTPPLLTTIS(ph)PEQESDERK ddPTM_HeLa_A485_30min_R1 2 AHLDHIPDYTPPLLTTISPEQESDERK 27 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLTT(0.02)IS(0.979)PEQES(0.001)DERK;AHLDHIPDYTPPLLTT(0.004)IS(0.908)PEQES(0.088)DERK ; 172.94 2.42E-14 310280000 108235 112425 87033 151664 136144 135937 171216 199039 113501 197286 TRUE FALSE FALSE 132311.5023 125572.1258 119230.1284 159949.0203 122589.0253 143054.4511 134634.3029 150224.3732 136279.6096 148106.231 0.893355408 0.847851741 0.805031143 1.079961452 0.827710114 0.965890835 0.909038749 1.014301506 0.920147712 1 17.17627281 -4.023004251 0.216300394 1.001412614 0.71462252 0.208722233 0.074613413 21.73751345 0.841831319 0.135681274 1.714612667 9.48E-05 4.023004251 -0.286790094 AHLDHIPDYTPPLLTTIS(ph)PEQESDERK ddPTM_HeLa_A486_30min_R1 1 AHLDHIPDYTPPLLTTISPEQESDERK 27 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLTT(0.002)IS(0.992)PEQES(0.006)DERK 122.11 2.08E-05 121890000 39879 42762 23433 20404 45705 49845 55020 55035 29949 57859 TRUE FALSE FALSE 37083.68804 39373.38338 32506.88516 47501.54316 39972.25272 43695.63069 41253.41406 42504.73191 32545.00343 43370.7298 0.855039521 0.907833084 0.749512063 1.095244267 0.921641229 1.007491248 0.951180998 0.980032665 0.750390957 1 15.4044341 -5.247542591 24.94989773 0.957428766 0.844498724 0.272256615 0.090084339 1100.002422 1974909.263 0.023763489 0.040881465 5.66E-06 5.247542591 -0.112930043 AHLGTALK ddPTM_HeLa_A485_30min_R1 1 AHLGTALK 8 0 P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 P62266 RPS23 40S ribosomal protein S23 0 0 71.877 0.031683 19326000 13675 16211 15336 16783 21835 20218 19957 25143 15659 23435 FALSE FALSE TRUE 16716.95657 18106.73543 21009.42458 17699.81279 19661.03073 21276.58322 15693.02392 18976.63983 18801.61767 17593.08579 0.950200367 1.029196109 1.194186446 1.006066418 1.117543049 1.209371879 0.891999511 1.07864192 1.06869357 1 14.10272093 -9.327039156 7.344226156 1 1.063667739 0.035296237 0.093950995 0 0 0.090136059 0.021861205 4.71E-10 9.327039156 0.063667739 AHLS(ph)ENELEALEK ddPTM_HeLa_A485_30min_R1 4 AHLSENELEALEK 13 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 AHLS(1)ENELEALEK;AHLS(1)ENELEALEK;AHLS(1)ENELEALEK;AHLS(1)ENELEALEK ;;; 153.86 2.80E-08 446340000 711045 607434 521712 966510 694312 619178 805700 636851 588582 1144890 TRUE FALSE FALSE 869214.5072 678468.1223 714714.979 1019307.994 625183.8594 651597.2026 633555.613 480662.2937 706705.0086 859489.9931 1.011314284 0.789384551 0.831557068 1.185945156 0.727389341 0.758120755 0.737129714 0.559241291 0.822237623 1 19.71312132 AHLS(ph)ENELEALEK ddPTM_HeLa_A486_30min_R1 2 AHLSENELEALEK 13 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 AHLS(1)ENELEALEK;AHLS(1)ENELEALEK ; 178.51 3.76E-17 384923000 400286 439844 249483 167380 353054 462359 488501 441398 363401 542186 TRUE FALSE FALSE 372228.0185 404989.1596 346089.499 389669.0989 308770.6752 405317.8475 366272.883 340901.3111 394900.8913 406419.0966 0.915872363 0.99648162 0.851558162 0.958786391 0.759734663 0.997290361 0.901219667 0.838792552 0.971659291 1 18.63260867 -7.96438314 10.58505197 0.999996937 0.904167736 0.192508984 0.069444527 0.620010807 178.918451 0.063919803 0.016510647 1.09E-08 7.96438314 -0.095829202 AHLS(ph)ENELEALEKNDMEQMK ddPTM_HeLa_A485_30min_R1 4 AHLSENELEALEKNDMEQMK 20 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK ;;; 336.39 1.81E-114 414116000 437353 363620 265474 703897 532821 571116 880440 870820 395827 1000190 TRUE FALSE FALSE 534640.666 406142.1959 363683.8799 742349.1107 479771.4704 601018.7506 692326.8015 657250.0296 475265.8482 750861.0401 0.712036765 0.540901944 0.484355774 0.988663775 0.638961732 0.800439387 0.922043846 0.875328449 0.632961124 1 19.51818641 -5.251107066 24.98112131 0.825498684 0.575278534 0.449870952 0.130201304 652.2566019 1577001.189 0.034576483 0.059059467 5.61E-06 5.251107066 -0.250220149 AHLS(ph)ENELEALEKNDMEQMK ddPTM_HeLa_A486_30min_R1 3 AHLSENELEALEKNDMEQMK 20 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK ;; 294.77 5.20E-87 230725000 320648 267731 133432 183376 298275 371440 497530 471940 221482 523240 TRUE FALSE FALSE 298172.231 246515.0205 185100.4438 426908.5953 260862.5682 325615.5093 373042.7317 364489.5644 240680.2381 392217.2983 0.760222031 0.628516441 0.471933402 1.088449176 0.66509705 0.830191607 0.951112389 0.929305173 0.613640039 1 18.58129364 -5.249167179 24.99850286 0.858712195 0.62105322 0.362287073 0.150427236 864.947358 1761896.769 0.039800941 0.068303956 5.63E-06 5.249167179 -0.237658976 AHNS(ph)GEDSDLKQR ddPTM_HeLa_A486_30min_R1 1 AHNSGEDSDLKQR 13 1 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 AHNS(0.918)GEDS(0.082)DLKQR 42.382 0.037682 78970000 54757 61611 58107 27158 88606 69144 75843 70568 53600 78491 TRUE FALSE FALSE 50918.81707 56728.71998 80607.58656 63225.19649 77492.20926 60613.71628 56866.27921 54501.20689 58246.09116 58836.34271 0.865431377 0.964178216 1.370030543 1.074594266 1.317080663 1.030208771 0.966516214 0.926318741 0.989967909 1 15.84441995 -6.514236876 23.0883419 0.969389357 1.126501881 0.198309948 0.140018386 250.1321887 668282.6895 0.054008328 0.044081165 3.06E-07 6.514236876 0.157112524 AHPS(ph)PGMDSR ddPTM_HeLa_A485_30min_R1 1 AHPSPGMDSR 10 0 A0A0X1KG68;Q5XG87;Q5XG87-2 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 AHPS(1)PGMDSR 68.277 0.011033 174260000 48740 70584 85524 41129 82125 71455 70826 90383 72407 81649 TRUE FALSE FALSE 59582.04485 78838.1848 117162.8866 43375.77313 73948.34664 75196.27331 55693.4465 68216.42753 86938.42074 61295.40694 0.972047464 1.286200529 1.911446426 0.707651279 1.206425576 1.226784796 0.908607174 1.112912548 1.41835131 1 15.90349135 -5.281180821 24.9976944 1.091538718 1.379528552 0.20047987 0.280295285 1372.012169 1737313.744 0.079235575 0.117701905 5.23E-06 5.281180821 0.287989834 AHPS(ph)PGMDSR ddPTM_HeLa_A486_30min_R1 1 AHPSPGMDSR 10 0 A0A0X1KG68;Q5XG87;Q5XG87-2 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 AHPS(1)PGMDSR 67.019 0.0082137 0 62778 75945 79798 21058 119460 59781 67522 90480 61350 64944 TRUE FALSE FALSE 58377.58639 69926.84161 110697.9227 49024.08821 104476.2129 52405.82803 50627.28143 69879.67916 66667.8674 48681.59969 1.199171489 1.436412157 2.273917114 1.007035277 2.146112978 1.076501766 1.039967498 1.435443363 1.369467475 1 15.57108896 AHQDKWAEK(ac)PAFGTPLEEHLKR ddPTM_HeLa_A486_30min_R1 1 AHQDKWAEKPAFGTPLEEHLKR 22 3 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 0 1 AHQDK(0.042)WAEK(0.958)PAFGTPLEEHLKR 60.133 0.012455 14532000 18986 22729 26722 18458 52359 34989 44507 42712 21035 31056 FALSE TRUE FALSE 17655.17944 20927.87126 37069.47404 42971.15682 45791.64599 30672.41292 33370.87785 32987.41 22858.33074 23279.37546 0.758404343 0.89898766 1.592374078 1.84588959 1.967047873 1.317578858 1.433495409 1.41702298 0.981913401 1 14.50676473 -4.702200591 5.612125814 1.487258228 0.804744156 0.396602813 0.300953019 0.18709855 11.660967 0.081189335 0.218908121 1.99E-05 4.702200591 -0.682514072 AHQGTGAGIS(ph)PVILNSGEGK ddPTM_HeLa_A485_30min_R1 1 AHQGTGAGISPVILNSGEGK 20 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 AHQGT(0.018)GAGIS(0.982)PVILNSGEGK 139.9 4.82E-08 517780000 345110 308200 266960 505060 401880 354160 467520 421420 290270 697280 TRUE FALSE FALSE 421878.5289 344241.309 365719.6131 532650.1489 361867.4161 372703.27 367630.5327 318066.0842 348524.5265 523460.9285 0.805940818 0.657625604 0.698656945 1.01755474 0.691297853 0.711998259 0.702307494 0.607621442 0.665808101 1 18.99772233 AHQGTGAGIS(ph)PVILNSGEGK ddPTM_HeLa_A486_30min_R1 1 AHQGTGAGISPVILNSGEGK 20 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 AHQGT(0.016)GAGIS(0.984)PVILNSGEGK 152.84 7.46E-10 612480000 398680 448060 308680 203990 480030 439820 492600 501200 380580 544270 TRUE FALSE FALSE 370734.5908 412554.0938 428209.1627 474899.0291 419820.1613 385559.4802 369346.2698 387087.7011 413568.9808 407981.2494 0.908704974 1.011208467 1.049580498 1.164021704 1.029018275 0.945042158 0.905302071 0.948787969 1.01369605 1 18.63814332 -6.220586338 6.449560906 0.955779543 1.039999088 0.220119887 0.064534265 0.311988106 36.97516488 0.0231358 0.022869914 6.02E-07 6.220586338 0.084219545 AHQLVMEGYNWCHDR ddPTM_HeLa_A485_30min_R1 1 AHQLVMEGYNWCHDR 15 0 P67775;P62714;H0YC23 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 0 0 189.8 8.46E-18 271290000 41230 61530 58416 55410 67601 63200 66899 83280 60330 59946 FALSE FALSE TRUE 50401.47126 68725.39826 80026.50929 58436.90799 60870.40708 66509.05427 52605.48214 62855.44942 72437.67762 45002.56542 1.119968846 1.527144011 1.778265495 1.298523927 1.352598602 1.47789473 1.168944073 1.396708139 1.609634405 1 15.45771963 AHQLVMEGYNWCHDR ddPTM_HeLa_A486_30min_R1 1 AHQLVMEGYNWCHDR 15 0 P67775;P62714;H0YC23 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 0 0 74.428 0.0053932 157250000 79660 85937 51905 51797 94847 91817 107030 91315 68382 114620 FALSE FALSE TRUE 74076.24536 79127.03914 72004.00606 120586.0337 82950.40485 80489.55207 80249.96195 70524.56789 74309.40682 85918.40595 0.862169689 0.920955624 0.838051 1.403494773 0.965455585 0.936813843 0.934025266 0.820831894 0.864883444 1 16.39067961 -6.539615043 2.361609099 0.888669914 1.005021229 0.074377238 0.153219777 0.781042933 8.779689509 0.069289105 0.053313653 2.89E-07 6.539615043 0.116351315 AHQNTLEVYPPFLFFLAVGGVYHPR ddPTM_HeLa_A485_30min_R1 2 AHQNTLEVYPPFLFFLAVGGVYHPR 25 0 Q5VV87;Q5VV89;O14880 Q5VV87 MGST3 Microsomal glutathione S-transferase 3 0 0 ; ; 120.41 1.76E-11 10860800 5654.4 4755.96 3160.8 4168.38 3063.63 2720.84 5157.45 4366.91 2431.8 9394.4 FALSE FALSE TRUE 6912.201773 5312.128151 4330.111452 4396.088045 2758.60424 2863.298975 4055.518675 3295.918475 2919.839954 7052.548971 0.980099791 0.753221023 0.613978218 0.623333218 0.391149959 0.405994909 0.575042966 0.467337198 0.414012007 1 12.78392906 -4.358008905 1.136441345 0.517219274 1.151086745 0.373594822 0.169330745 1.294802254 1.584864466 0.050024576 0.943288377 4.39E-05 4.358008905 0.633867471 AHQNTLEVYPPFLFFLAVGGVYHPR ddPTM_HeLa_A486_30min_R1 2 AHQNTLEVYPPFLFFLAVGGVYHPR 25 0 Q5VV87;Q5VV89;O14880 Q5VV87 MGST3 Microsomal glutathione S-transferase 3 0 0 ; ; 94.837 5.12E-05 2827130 670.75 1379.06 895.06 393.47 2178.37 755.42 1268.68 1540.03 1086.73 748.7 FALSE FALSE TRUE 623.7338888 1269.778263 1241.651203 916.0180449 1905.138522 662.2239609 951.2428453 1189.398788 1180.928631 561.2206468 1.111387994 2.262529489 2.212411838 1.632188784 3.394633703 1.179970774 1.694953403 2.119306897 2.104214516 1 9.132424275 -10.53724321 2.856798732 0.95309546 1.989140798 0.182096903 0.613950645 73371622.73 77078884.66 26608585.59 0.146325301 2.90E-11 10.53724321 1.036045337 AHS(ph)DDEKWGR ddPTM_HeLa_A485_30min_R1 2 AHSDDEKWGR 10 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 AHS(1)DDEKWGR;AHS(1)DDEKWGR ; 138.42 1.29E-05 1098120000 1028030 884590 586100 1606820 963430 955680 1355050 1048230 729610 1937400 TRUE FALSE FALSE 1256711.727 988035.1056 802922.7797 1694596.508 867507.5264 1005717.927 1065532.498 791149.9489 876036.0346 1454441.835 0.864050866 0.679322529 0.552048738 1.1651181 0.596453915 0.691480335 0.732605782 0.54395434 0.602317682 1 20.47203417 AHS(ph)DDEKWGR ddPTM_HeLa_A486_30min_R1 1 AHSDDEKWGR 10 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 AHS(1)DDEKWGR 152.47 1.48E-06 403250000 373910 376270 149050 181390 258020 404650 437390 417130 283860 650650 TRUE FALSE FALSE 347700.8399 346452.9948 206766.1517 422285.0869 225656.7257 354728.3972 327950.3958 322158.6049 308465.2134 487723.005 0.712906376 0.710347864 0.423941765 0.865829749 0.462673943 0.727315287 0.672411169 0.660536004 0.632459839 1 18.8957025 -10.53071422 2.438311569 1.025041912 0.650832974 0.425257394 0.121346231 3251154.71 2873538.088 534949.6194 0.029423744 2.95E-11 10.53071422 -0.374208938 AHS(ph)FTSK ddPTM_HeLa_A485_30min_R1 4 AHSFTSK 7 0 P78314;P78314-3;P78314-4 P78314 SH3BP2 SH3 domain-binding protein 2 1 0 AHS(0.997)FT(0.003)SK;AHS(0.95)FT(0.05)SK;AHS(1)FTSK;AHS(1)FTSK ;;; 125.82 0.0012777 636782000 1269200 987250 555870 1338930 566360 949800 957360 1116620 719950 1381400 TRUE FALSE FALSE 1551529.161 1102700.3 761509.4447 1412072.356 509971.2098 999530.0593 752812.2151 842767.1942 864437.3612 1037042.403 1.496109665 1.063312644 0.734308879 1.361634155 0.491755408 0.96382757 0.725922309 0.812664161 0.833560285 1 19.98404345 -1.038933183 0.837291477 0.839172996 199.9999944 0.436919986 0.215182001 515.8550067 1.627234097 0.070586573 195340.307 0.091425389 1.038933183 199.1608214 AHS(ph)FTSK ddPTM_HeLa_A486_30min_R1 2 AHSFTSK 7 0 P78314;P78314-3;P78314-4 P78314 SH3BP2 SH3 domain-binding protein 2 1 0 AHS(0.991)FT(0.009)SK;AHS(0.997)FT(0.003)SK ; 78.113 0.010456 179892000 303300 176067 192488 91743 133725 500610 223000 209518 340280 313360 TRUE FALSE FALSE 282040.2362 162114.8097 267024.5086 213582.3404 116951.9636 438849.828 167203.0413 161815.3251 369775.7444 234892.6164 1.200719889 0.690165626 1.136793965 0.909276519 0.497895444 1.868299799 0.711827574 0.688890641 1.574233154 1 17.84164184 AHS(ph)HEEASRPAATSTR ddPTM_HeLa_A485_30min_R1 6 AHSHEEASRPAATSTR 16 1 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR ;;;;; 226.57 2.99E-34 4325062000 442730 579397 497087 494027 657082 519209 695395 676224 549457 688949 TRUE FALSE FALSE 541213.7611 647152.4391 680980.1668 521014.4441 591660.6089 546393.9804 546818.1774 510379.0037 659727.98 517206.6935 1.046416777 1.25124529 1.316649949 1.007362145 1.14395389 1.056432539 1.057252708 0.986798915 1.275559633 1 18.98038142 -5.271767028 24.9918896 1.076104899 1.209418138 0.253425763 0.101704864 895.1560489 2166187.001 0.027775804 0.041724097 5.35E-06 5.271767028 0.133313239 AHS(ph)HEEASRPAATSTR ddPTM_HeLa_A486_30min_R1 6 AHSHEEASRPAATSTR 16 1 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR;AHS(1)HEEASRPAATSTR ;;;;; 254.32 1.04E-50 3605664000 738434 798972 623849.5 195460.5 864211 792859 797519 837681 682427 778848 TRUE FALSE FALSE 686673.5899 735658.5489 865420.7337 455041.922 755813.5979 695044.1178 597971.3109 646959.3227 741580.3218 583819.3914 1.176174687 1.26007899 1.482343249 0.779422419 1.294601737 1.190512217 1.024240236 1.108149767 1.270222149 1 19.1551626 -1 0.087099909 0.933306955 1.812233156 0.091263186 0.174977153 421.4141705 2.655885839 3.652797352 44.31603249 0.1 1 0.878926201 AHS(ph)IQIMK ddPTM_HeLa_A485_30min_R1 2 AHSIQIMK 8 0 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 1 0 AHS(1)IQIMK;AHS(1)IQIMK ; 73.781 0.010168 327186000 763470 754310 640540 984720 1030820 872310 1259790 1241040 782240 1211840 TRUE FALSE FALSE 933301.2676 842519.9929 877502.4011 1038512.76 928187.9414 917982.8028 990625.575 936672.9941 939228.3929 909750.5903 1.02588696 0.926099968 0.964552714 1.141535682 1.02026638 1.009048867 1.088897974 1.02959317 1.03240207 1 19.79511156 AHS(ph)IQIMK ddPTM_HeLa_A486_30min_R1 2 AHSIQIMK 8 0 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 1 0 AHS(1)IQIMK;AHS(1)IQIMK ; 84.658 0.0041037 597280000 1283900 1383770 865450 555900 1411300 1396700 1667130 1596280 1065040 1598290 TRUE FALSE FALSE 1193905.24 1274115.026 1200575.418 1294163.294 1234281.594 1224389.355 1249996.441 1232841.891 1157358.525 1198067.781 0.996525622 1.06347491 1.002093067 1.080208745 1.030226848 1.021970021 1.043343675 1.029025161 0.966020907 1 20.1922781 -7.687472493 6.668573295 0.983391367 1.035016845 0.392156308 0.025054696 0.17891441 12.64735711 0.016240594 0.005924952 2.05E-08 7.687472493 0.051625477 AHS(ph)LLFENSDSFSEDSSTLGR ddPTM_HeLa_A485_30min_R1 3 AHSLLFENSDSFSEDSSTLGR 21 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 AHS(0.992)LLFENS(0.007)DSFSEDSSTLGR;AHS(1)LLFENSDSFSEDSSTLGR;AHS(1)LLFENSDSFSEDSSTLGR ;; 251.82 8.77E-48 564347000 175946 178858 186602 168965 230927 190441 251843 272222 165216 262840 TRUE FALSE FALSE 215084.5807 199773.8872 255633.845 178195.1301 207935.097 200412.1963 198034.6857 205459.1277 198373.3357 197318.8252 1.090035786 1.012442107 1.295537031 0.903082257 1.05380263 1.015677019 1.003627938 1.041254566 1.005344196 1 17.59016908 -5.286778578 24.98710503 1.007613678 1.120648789 0.375438319 0.075873408 843.1255825 831408.6044 0.020629432 0.030612966 5.17E-06 5.286778578 0.11303511 AHS(ph)LLFENSDSFSEDSSTLGR ddPTM_HeLa_A486_30min_R1 3 AHSLLFENSDSFSEDSSTLGR 21 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 AHS(1)LLFENSDSFSEDSSTLGR;AHS(1)LLFENSDSFSEDSSTLGR;AHS(1)LLFENSDSFSEDSSTLGR ;; 202.58 1.21E-26 545610000 321251 332050 236668 134175 368420 319851 349840 369280 269413 372860 TRUE FALSE FALSE 298732.9638 305737.1487 328312.1878 312366.1808 322209.3282 280391.0356 262306.3318 285203.0053 292765.9358 279493.4291 1.068837163 1.093897448 1.174668717 1.117615473 1.152833286 1.003211548 0.938506256 1.020428302 1.047487723 1 18.09245484 -6.271576976 24.23904588 0.999239739 1.122763216 0.720759249 0.037212733 258.9654949 619185.6725 0.01376564 0.012288006 5.35E-07 6.271576976 0.123523477 AHS(ph)PAEGASVESSSPGPK ddPTM_HeLa_A485_30min_R1 4 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 1 0 AHS(1)PAEGASVESSSPGPK;AHS(1)PAEGASVESSSPGPK;AHS(0.999)PAEGAS(0.001)VESSSPGPK;AHS(1)PAEGASVESSSPGPK ;;; 211.96 5.98E-26 3061020000 2138390 2148560 1792570 2686320 2624450 2429620 3518560 3104350 2081180 4226920 TRUE FALSE FALSE 2614067.478 2399815.402 2455716.238 2833066.859 2363150.543 2556831.146 2766790.912 2343003.295 2498853.736 3173226.635 0.823788459 0.756269778 0.77388618 0.892803189 0.744715337 0.805751193 0.871917209 0.738366201 0.787480386 1 21.59751913 -10.59543453 2.641003291 1.01715998 0.79907773 0.601448576 0.048977546 9957097.394 9248843.959 1186972.295 0.012573341 2.54E-11 10.59543453 -0.21808225 AHS(ph)PAEGASVESSSPGPK ddPTM_HeLa_A486_30min_R1 4 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 1 0 AHS(0.999)PAEGAS(0.001)VESSSPGPK;AHS(1)PAEGASVESSSPGPK;AHS(1)PAEGASVESSSPGPK;AHS(1)PAEGASVESSSPGPK ;;; 199.49 2.74E-25 3146430000 3582320 3689500 2108090 1003080 3637570 3848590 4577000 4405110 3237900 4476700 TRUE FALSE FALSE 3331217.867 3397130.583 2924398.905 2335220.933 3181312.052 3373790.095 3431786.189 3402162.616 3518563.779 3355705.182 0.992702781 1.012344768 0.871470748 0.695895738 0.948030855 1.005389304 1.022672137 1.013844313 1.048531855 1 21.67818454 -6.142657 4.152485856 1.019074123 0.8927238 0.340171258 0.081170702 0.302745547 8.820188107 0.030556658 0.030646662 7.20E-07 6.142657 -0.126350322 AHS(ph)PASLSFASYR ddPTM_HeLa_A485_30min_R1 6 AHSPASLSFASYR 13 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 AHS(1)PASLSFASYR;AHS(1)PASLSFASYR;AHS(1)PASLSFASYR;AHS(1)PASLSFASYR;AHS(1)PASLSFASYR;AHS(1)PASLSFASYR ;;;;; 152.07 4.76E-08 2915930000 604348 976330 1001400 454142 1106310 860290 929860 1019370 799390 755140 TRUE FALSE FALSE 738783.1276 1090503.301 1371859.532 478950.6275 996161.8919 905333.4541 731187.8147 769367.9092 959820.2406 566897.4953 1.303204078 1.923634007 2.419942835 0.844862839 1.757216957 1.596996744 1.289806042 1.357155245 1.693110745 1 19.11272837 -10.99781806 0.1051463 1.89E-07 2.062198717 0.171059 0.398703737 128.278031 1.912972965 39.47924929 7.481301434 1.01E-11 10.99781806 2.062198528 AHS(ph)PASLSFASYR ddPTM_HeLa_A486_30min_R1 4 AHSPASLSFASYR 13 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 AHS(1)PASLSFASYR;AHS(1)PASLSFASYR;AHS(1)PASLSFASYR;AHS(1)PASLSFASYR ;;; 218.63 1.98E-27 2664610000 832600 1016050 915540 105519 1275680 787660 843920 912150 922280 590840 TRUE FALSE FALSE 774239.0396 935534.4976 1270061.607 245653.5646 1115672.319 690486.5175 632762.2899 704473.3571 1002223.973 442889.8183 1.748152718 2.112341397 2.867669462 0.554660673 2.51907421 1.559048073 1.428712659 1.590628929 2.262919425 1 18.75658831 -11.15924752 0.148789438 4.00E-15 2.167553533 0.136837334 0.615530513 100.1145828 2.035703435 41.40532712 3.778737106 6.93E-12 11.15924752 2.167553533 AHS(ph)SLGPGRPR ddPTM_HeLa_A486_30min_R1 1 AHSSLGPGRPR 11 1 Q9NRR6-2;Q9NRR6 Q9NRR6-2 INPP5E 72 kDa inositol polyphosphate 5-phosphatase 1 0 AHS(0.5)S(0.5)LGPGRPR 46.88 0.02797 17681000 4578.8 3993.6 6614.2 1311.3 7513.9 3621.7 2984.9 3582.8 4905.6 1548.1 TRUE FALSE FALSE 4257.849765 3677.132592 9175.395374 3052.772669 6571.436598 3174.891477 2238.046449 2767.074652 5330.821358 1160.445684 3.669150418 3.168724434 7.906785733 2.63068984 5.662855824 2.735924242 1.928609396 2.384493037 4.593770681 1 10.18046328 -6.352889728 7.318667374 2.562679476 4.598163041 0.294768254 1.608550803 0.372967478 26.1329201 0.555053696 0.488701323 4.44E-07 6.352889728 2.035483566 AHS(ph)SPASLQLGAVS(ph)PGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A485_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 0 AHS(0.492)S(0.492)PAS(0.016)LQLGAVS(1)PGTLTPTGVVSGPAATPTAQHLR 120.25 6.16E-06 324530000 45188 54289 35274 66916 71163 68410 79588 102040 48776 72796 TRUE FALSE FALSE 55239.9147 60637.6263 48323.32047 70571.45164 64077.76185 71991.84182 62583.37363 77014.53001 58564.8958 54649.29691 1.010807418 1.109577428 0.884244139 1.291351502 1.172526738 1.317342507 1.14518168 1.409250153 1.071649575 1 15.73791531 -5.271109081 24.99338954 1.219425316 1.012346435 0.343780925 0.124240819 655.6503113 1694665.919 0.032273185 0.048588379 5.36E-06 5.271109081 -0.207078881 AHS(ph)SPASLQLGAVSPGT(ph)LTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A485_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 0 AHS(0.727)S(0.237)PAS(0.036)LQLGAVS(0.001)PGT(0.409)LT(0.333)PT(0.066)GVVS(0.074)GPAAT(0.098)PT(0.02)AQHLR 90.331 3.80E-05 478250000 49111 68311 81028 11995 81505 47597 60101 71372 48246 34064 TRUE FALSE FALSE 60035.57252 76299.37722 111003.6291 12650.25648 73390.07602 50089.10532 47259.93037 53867.90509 57928.52966 25572.4717 2.347664051 2.983652817 4.34074697 0.494682588 2.869885902 1.958711927 1.848078313 2.106480192 2.265269088 1 14.64230399 -2.560237136 0.080394626 1.68E-11 6.767734467 0.226607611 0.888439822 214.5154796 1.740628707 29.08281197 168.0840781 0.002752725 2.560237136 6.767734467 AHS(ph)SPASLQLGAVSPGTLT(ph)PTGVVSGPAATPTAQHLR ddPTM_HeLa_A486_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 0 AHS(0.761)S(0.23)PAS(0.009)LQLGAVSPGT(0.025)LT(0.884)PT(0.064)GVVS(0.013)GPAAT(0.011)PT(0.003)AQHLR 114.92 1.72E-05 227340000 31550 46872 43532 2956.1 54939 29904 28194 36806 50628 9616.8 TRUE FALSE FALSE 29338.50792 43157.69202 60388.75623 6881.950193 48048.03833 26214.74852 21139.56299 28426.07727 55016.4758 7208.690685 4.069880261 5.986897469 8.377215623 0.954674086 6.665293384 3.636547837 2.932510759 3.94330656 7.631965111 1 12.81552153 -5.247242126 24.98783797 4.019606149 6.128887307 0.183300482 2.218324121 1487.137775 2617429.025 0.582872863 1.003373737 5.66E-06 5.247242126 2.109281158 AHS(ph)SPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A485_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHS(0.333)S(0.333)PAS(0.333)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR 133.71 8.23E-07 682020000 46928 110460 118120 26141 86787 129350 26537 88259 133810 26770 TRUE FALSE FALSE 57366.9717 123377.3361 161817.5034 27569.01664 78146.18155 136122.566 20867.15316 66613.34187 160664.4396 20096.73167 2.854542353 6.139174179 8.051931333 1.37181593 3.888502014 6.773368339 1.038335661 3.314635582 7.994555647 1 14.29467327 -5.260373145 24.9995649 3.756603435 5.727611599 0.124082129 2.48546322 218.424115 5121239.833 0.682556077 1.101185245 5.49E-06 5.260373145 1.971008164 AHS(ph)SPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A486_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHS(0.759)S(0.212)PAS(0.029)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR 69.422 0.00075429 253840000 92186 83882 85322 12779 106100 48662 62038 78531 80519 15673 TRUE FALSE FALSE 85724.23745 77234.88483 118360.9634 29750.15781 92791.94866 42658.5772 46515.43623 60651.20562 87498.45175 11748.37879 7.296686548 6.574088752 10.07466354 2.532277717 7.89827689 3.631018201 3.959306818 5.162517035 7.447704347 1 13.52017407 -5.261362563 24.99999584 4.772684288 7.841040439 0.353199048 2.125679928 8.309254626 2703781.982 0.562839787 0.900111068 5.48E-06 5.261362563 3.068356151 AHSAPSSGTSSRPGS(ph)IR ddPTM_HeLa_A485_30min_R1 1 AHSAPSSGTSSRPGSIR 17 1 B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6 B7Z896 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 1 0 AHS(0.002)APS(0.021)S(0.031)GT(0.098)S(0.098)S(0.098)RPGS(0.654)IR 42.908 0.03428 42126000 15986 26096 27603 9637.6 30082 24231 19092 28270 25646 20780 TRUE FALSE FALSE 19542.03055 29147.70019 37814.49836 10164.07768 27086.93046 25499.69769 15012.83823 21336.73817 30792.91696 15599.92843 1.252700013 1.868450893 2.424017426 0.651546431 1.736349662 1.634603505 0.96236584 1.367745902 1.97391399 1 13.92925179 -5.251445539 24.94267259 1.361693356 1.850395493 0.210804476 0.455071386 1139.249209 2843337.836 0.122893222 0.209659632 5.60E-06 5.251445539 0.488702137 AHSAPSSGTSSRPGS(ph)IR ddPTM_HeLa_A486_30min_R1 1 AHSAPSSGTSSRPGSIR 17 1 B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6 B7Z896 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 1 0 AHSAPS(0.15)S(0.15)GT(0.15)S(0.038)S(0.038)RPGS(0.475)IR 50.358 0.02286 91787000 42662 39693 33813 5308.8 45830 35108 41317 38757 38142 24134 TRUE FALSE FALSE 39671.61411 36547.58212 46906.29914 12359.15469 40081.57405 30776.73191 30979.04959 29932.87716 41448.17927 18090.68931 2.192929933 2.02024265 2.592842004 0.683177654 2.215591311 1.701247055 1.71243058 1.65460125 2.291133221 1 14.14295976 -11.02088564 2.560228289 0.009549213 1.875668219 0.22670162 0.495179515 27570956.29 13954718 160321037.5 0.121636548 9.53E-12 11.02088564 1.866119006 AHSEVFTKPSGQQT(ph)LSPDR ddPTM_HeLa_A485_30min_R1 1 AHSEVFTKPSGQQTLSPDR 19 1 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 0 AHSEVFTKPSGQQT(0.951)LS(0.048)PDR 156.23 6.38E-09 215240000 79932 86996 93897 77653 108840 96805 109320 98510 97150 125800 TRUE FALSE FALSE 97712.59764 97169.42544 128633.4077 81894.98676 98003.50744 101873.5601 85962.88894 74350.26804 116647.1139 94440.37518 1.034648554 1.028897071 1.362059473 0.867160752 1.037728908 1.078707702 0.910234513 0.787272053 1.235140306 1 16.52711615 -5.298246003 24.99931583 0.981778181 1.130571686 0.192081432 0.143618995 938.1230829 637177.7567 0.039939955 0.059242328 5.03E-06 5.298246003 0.148793505 AHSEVFTKPSGQQT(ph)LSPDR ddPTM_HeLa_A486_30min_R1 1 AHSEVFTKPSGQQTLSPDR 19 1 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 0 AHSEVFTKPSGQQT(0.66)LS(0.339)PDR 104.81 8.57E-05 215980000 53246 56775 51935 17116 64967 58863 71763 63282 54004 66993 TRUE FALSE FALSE 49513.73036 52275.94223 72045.62287 39846.91299 56818.23307 51601.08154 53807.13837 48874.07004 58685.1102 50217.51675 0.985985241 1.040990189 1.434671157 0.793486329 1.131442507 1.027551438 1.071481464 0.973247448 1.168618323 1 15.61590307 -5.280387953 24.99551228 1.029216922 1.142593091 0.142050041 0.145391137 1765.949249 2329501.28 0.0399742 0.059399754 5.24E-06 5.280387953 0.113376169 AHSEVFTKPSGQQTLS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 AHSEVFTKPSGQQTLSPDR 19 1 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 0 AHSEVFTKPSGQQT(0.009)LS(0.991)PDR 225.88 3.94E-35 275910000 173450 211510 186960 179320 191940 203140 196800 198820 195480 248870 TRUE FALSE FALSE 212033.3541 236244.2546 256124.2841 189115.7975 172829.7797 213776.0963 154752.0723 150059.0833 234711.043 186831.2891 1.1348921 1.264479069 1.370885387 1.012227654 0.925058005 1.144219993 0.828298477 0.803179617 1.256272673 1 17.51137656 -5.351354897 6.452968107 0.981830975 1.256604566 0.429463855 0.137520074 0.215432199 12.86523893 0.038776351 0.057866319 4.45E-06 5.351354897 0.274773592 AHSEVFTKPSGQQTLS(ph)PDR ddPTM_HeLa_A486_30min_R1 3 AHSEVFTKPSGQQTLSPDR 19 1 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 0 AHSEVFTKPSGQQT(0.038)LS(0.962)PDR;AHSEVFTKPSGQQT(0.468)LS(0.531)PDR;AHSEVFTKPSGQQT(0.23)LS(0.769)PDR ;; 274.34 1.28E-69 496260000 438370 486780 335640 138011 454740 453660 493460 455630 432460 511110 TRUE FALSE FALSE 407642.5267 448205.78 465608.7968 321296.5827 397702.2689 397692.0417 369991.0887 351892.9953 469945.981 383124.7292 1.063994296 1.169869094 1.215292987 0.838621363 1.03804907 1.038022376 0.965719674 0.91848155 1.226613542 1 18.54745462 -5.233802561 24.99839471 1.001533109 1.151733826 0.308983559 0.100057855 872.5759482 789272.1485 0.026380728 0.045679533 5.84E-06 5.233802561 0.150200717 AHSFLMDFIHQVGLFGR ddPTM_HeLa_A485_30min_R1 4 AHSFLMDFIHQVGLFGR 17 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 0 0 ;;; ;;; 301.48 6.71E-69 288570000 64450.1 87539.3 95928.3 53049.2 77889.9 74179.9 108404.7 114626.2 44034.9 97765.6 FALSE FALSE TRUE 78786.80239 97776.25964 131416.1701 55947.14347 70134.90807 78063.84486 85243.15026 86513.94472 52872.30052 73394.43516 1.073471064 1.332202631 1.790546787 0.762280456 0.955588907 1.063620759 1.161438876 1.178753465 0.720385686 1 16.16338306 -5.27687466 24.99134395 0.995233611 1.392086457 0.445369927 0.214768748 772.1586196 1250204.251 0.061882373 0.092159995 5.29E-06 5.27687466 0.396852845 AHSFLMDFIHQVGLFGR ddPTM_HeLa_A486_30min_R1 4 AHSFLMDFIHQVGLFGR 17 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 0 0 ;;; ;;; 270.21 8.89E-55 148345000 38388.9 45064 39650.7 22228.8 58389.4 44855.3 51912.7 55810.5 42968.2 55339.6 FALSE FALSE TRUE 35698.03635 41492.96452 55004.51292 51749.76978 51065.65699 39321.50914 38923.59338 43103.66748 46692.71817 41482.20396 0.860562674 1.000259402 1.325978556 1.247517365 1.231025648 0.947912729 0.938320284 1.039088172 1.125608423 1 15.34020493 -6.268845718 24.78210286 1.008137331 1.142765904 0.175040754 0.132514662 975.2520119 3263247.515 0.051091744 0.04600881 5.38E-07 6.268845718 0.134628573 AHSIQIMK ddPTM_HeLa_A485_30min_R1 2 AHSIQIMK 8 0 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 96.253 0.0079956 41149000 63925 77771 72888 66976 99398 78178 91203 98902 76900 98455 FALSE FALSE TRUE 78144.89571 86865.64193 99852.30432 70634.72929 89501.58611 82271.27919 71716.73399 74646.12943 92333.12463 73911.98043 1.057269677 1.175257941 1.350962371 0.955660082 1.210921228 1.113098022 0.97029918 1.009932747 1.24923083 1 16.17352061 -6.529342003 24.59345581 1.055837001 1.152805683 0.118924644 0.118778775 297.1301114 1130597.217 0.044848794 0.034831415 2.96E-07 6.529342003 0.096968682 AHSSPAS(ph)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A485_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHS(0.004)S(0.004)PAS(0.516)LQLGAVS(0.471)PGT(0.004)LTPTGVVSGPAATPTAQHLR 94.45 5.33E-05 1758200000 11436 23665 39142 7466.6 42618 27255 25214 24837 26318 12194 TRUE FALSE FALSE 13979.89875 26432.41589 53622.25463 7874.481452 38374.80228 28682.02966 19826.82292 18745.68681 31599.7812 9154.260214 1.527146751 2.887444236 5.857628403 0.86019856 4.192015672 3.133189246 2.165857476 2.047755512 3.451920795 1 13.16022759 -6.757274202 23.20315749 2.253696263 3.144098281 0.090367178 1.393403063 114.9294704 640254.3828 0.534663995 0.39821778 1.75E-07 6.757274202 0.890402018 AHSSPAS(ph)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A486_30min_R1 2 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHS(0.133)S(0.133)PAS(0.482)LQLGAVS(0.253)PGTLTPTGVVSGPAATPTAQHLR;AHS(0.087)S(0.416)PAS(0.494)LQLGAVS(0.004)PGTLTPTGVVSGPAATPTAQHLR ; 190.77 1.39E-21 11669700000 356660 387390 365930 43828 452070 250040 307490 321610 287030 185927 TRUE FALSE FALSE 331659.9758 356691.8055 507627.8959 102033.7989 395367.1652 219192.607 230552.7497 248386.4237 311909.9915 139369.669 2.379714167 2.559321609 3.64231256 0.732109071 2.836823593 1.572742538 1.654253406 1.782212912 2.238004823 1 17.0885571 -5.25424052 24.99922888 1.76226964 2.830336588 0.415230237 0.633014817 581.4923426 2019323.177 0.164838661 0.278146334 5.57E-06 5.25424052 1.068066948 AHSSPASLQLGAVS(ph)PGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_A485_30min_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHSS(0.001)PAS(0.004)LQLGAVS(0.994)PGTLTPTGVVSGPAATPTAQHLR 181.55 3.46E-21 5205800000 41636 80180 122570 14844 150900 56381 75609 74530 80026 34168 TRUE FALSE FALSE 50897.78456 89556.35353 167913.7436 15654.89013 135875.8662 59333.02198 59454.51948 56251.40064 96086.48416 25650.54642 1.984276816 3.491401395 6.546205326 0.610314099 5.297191879 2.313128969 2.317865613 2.192990345 3.745981961 1 14.64670194 AHT(ph)PLNTPDPSTK ddPTM_HeLa_A485_30min_R1 3 AHTPLNTPDPSTK 13 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 AHT(1)PLNTPDPSTK;AHT(0.998)PLNT(0.002)PDPSTK;AHT(1)PLNTPDPSTK ;; 156.49 2.75E-08 2147350000 2436000 2159110 1502180 3804500 2838380 2267140 3777800 3377400 1907610 4761400 TRUE FALSE FALSE 2977879.796 2411599.133 2057898.893 4012330.201 2555780.921 2385843.945 2970642.168 2549087.354 2290449.829 3574470.607 0.833096736 0.674673091 0.575721308 1.122496348 0.715009634 0.667467776 0.831071925 0.713137031 0.640780155 1 21.76929816 -11.46292294 2.234651601 3.668949495 0.753527626 0.208127943 0.144757986 5803424.262 506425.8738 78746690.23 0.037935903 3.44E-12 11.46292294 -2.915421869 AHT(ph)PLNTPDPSTK ddPTM_HeLa_A486_30min_R1 5 AHTPLNTPDPSTK 13 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 AHT(1)PLNTPDPSTK;AHT(1)PLNTPDPSTK;AHT(1)PLNTPDPSTK;AHT(1)PLNTPDPSTK;AHT(1)PLNTPDPSTK ;;;; 199.08 2.64E-21 4047420000 4915080 4596230 2106020 2228570 3942170 5419900 6610010 5924230 3683260 7232380 TRUE FALSE FALSE 4570558.273 4232007.996 2921527.345 5188223.586 3447706.279 4751247.844 4956115.584 4575412.154 4002527.942 5421344.973 0.843067227 0.780619573 0.538893459 0.956999345 0.635950359 0.876396515 0.914185614 0.843962555 0.738290583 1 22.37021938 -6.320176844 24.99427461 0.867290976 0.752394316 0.20457665 0.121285741 463.4821708 197221.874 0.041392222 0.036504518 4.78E-07 6.320176844 -0.11489666 AHT(ph)PTPGIYMGR ddPTM_HeLa_A485_30min_R1 6 AHTPTPGIYMGR 12 0 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.999)PT(0.001)PGIYMGR;AHT(1)PTPGIYMGR;AHT(0.982)PT(0.018)PGIYMGR;AHT(0.995)PT(0.005)PGIYMGR;AHT(0.998)PT(0.002)PGIYMGR;AHT(1)PTPGIYMGR ;;;;; 162.88 3.52E-10 6779930000 3439100 2271350 2599390 6253110 4140380 2138380 3287130 1821350 3341180 7924170 TRUE FALSE FALSE 4204115.93 2536964.624 3561012.531 6594701.566 3728149.229 2250342.27 2584807.822 1374661.057 4011724.179 5948820.253 0.706714231 0.426465167 0.598608191 1.108573009 0.626703963 0.37828379 0.434507636 0.23108129 0.67437307 1 22.50417216 -8.019536726 23.82056964 1.000000029 0.562856504 0.255375677 0.224293143 1167.30152 1423257.966 0.235465987 0.060797057 9.56E-09 8.019536726 -0.437143524 AHT(ph)PTPGIYMGR ddPTM_HeLa_A486_30min_R1 6 AHTPTPGIYMGR 12 0 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.996)PT(0.004)PGIYMGR;AHT(0.995)PT(0.005)PGIYMGR;AHT(0.997)PT(0.003)PGIYMGR;AHT(0.998)PT(0.002)PGIYMGR;AHT(0.977)PT(0.023)PGIYMGR;AHT(0.874)PT(0.126)PGIYMGR ;;;;; 155.43 7.58E-08 7730980000 2422930 2919870 1740186 991421 2276270 3181920 3054510 2989390 2560260 2933520 TRUE FALSE FALSE 2253095.119 2688488.867 2414032.623 2308078.192 1990758.991 2789367.062 2290239.291 2308771.155 2782185.398 2198947.498 1.024624336 1.22262531 1.097812761 1.049628604 0.905323566 1.268500983 1.041516131 1.049943738 1.265235028 1 21.06838173 AHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A485_30min_R1 17 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.787)PT(0.213)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.988)PT(0.012)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.958)PT(0.042)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.825)PT(0.175)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.999)PT(0.001)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.912)PT(0.088)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.952)PT(0.048)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.999)PT(0.001)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.55)PT(0.45)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.837)PT(0.163)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.985)PT(0.015)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.763)PT(0.237)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.96)PT(0.04)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.978)PT(0.022)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.756)PT(0.244)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.985)PT(0.015)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.992)PT(0.008)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ;;;;;;;;;;;;;;;; 358.51 2.45E-148 97575170000 3167488.7 3529378.6 3022660.3 3900800.9 4684075.1 3371946.5 4763559.5 4771572 3346129 5666982 TRUE FALSE FALSE 3872085.634 3942108.726 4140868.128 4113891.776 4217712.136 3548496.405 3745786.098 3601336.485 4017666.398 4254307.68 0.910156464 0.926615803 0.973335367 0.966994417 0.991398002 0.834094915 0.880469016 0.846515287 0.944376077 1 22.02049295 -6.250908645 24.95769165 0.890209385 0.954024762 0.203553486 0.049753839 919.7147675 2179712.123 0.016116804 0.015952652 5.61E-07 6.250908645 0.063815377 AHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A486_30min_R1 15 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.773)PT(0.227)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.782)PT(0.218)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.87)PT(0.13)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.798)PT(0.202)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.704)PT(0.294)PGIY(0.003)MGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.838)PT(0.162)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.997)PT(0.003)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.997)PT(0.003)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.928)PT(0.072)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.983)PT(0.016)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.565)PT(0.435)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.803)PT(0.197)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.993)PT(0.007)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.987)PT(0.013)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.793)PT(0.206)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ;;;;;;;;;;;;;; 298.23 1.42E-92 62100720000 3904008 4048778 2660341 1345827 4151171 4064483 4691590 4467673 3305933 4755910 TRUE FALSE FALSE 3630357.2 3727938.086 3690496.282 3133153.27 3630492.425 3563048.412 3517704.559 3450481.387 3592493.934 3564999.18 1.018333249 1.045705173 1.035202561 0.878865075 1.018371181 0.9994528 0.986733624 0.967877189 1.007712415 1 21.76547031 AHT(ph)SPAPAPRPTPR ddPTM_HeLa_A485_30min_R1 1 AHTSPAPAPRPTPR 14 1 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 AHT(0.5)S(0.5)PAPAPRPTPR 85.493 0.0022783 181240000 73498 103300 149450 71228 136540 79921 85087 99689 108150 89157 TRUE FALSE FALSE 89847.37653 115380.0364 204737.7741 75119.00528 122945.5982 84105.53998 66907.46735 75240.11644 129854.713 66931.80071 1.34237202 1.723844797 3.058901329 1.122321594 1.836878687 1.256585645 0.999636445 1.124131065 1.940104877 1 16.03040421 AHT(ph)SPAPAPRPTPR ddPTM_HeLa_A486_30min_R1 1 AHTSPAPAPRPTPR 14 1 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 AHT(0.5)S(0.5)PAPAPRPTPR 91.657 0.0015254 161700000 75380 86262 82434 19835 92716 79283 72863 82349 82594 64823 TRUE FALSE FALSE 70096.25126 79426.28496 114354.6525 46176.88241 81086.69474 69501.86955 54631.90673 63599.93037 89753.31442 48590.89887 1.442579843 1.634591802 2.353417103 0.950319576 1.668763012 1.430347476 1.124323855 1.308885652 1.84712192 1 15.5683985 -5.274402284 24.99108011 1.355066881 1.792635861 0.291326904 0.33962502 1022.183049 1970656.499 0.094269807 0.14079985 5.32E-06 5.274402284 0.43756898 AHTLLS(ph)PPSANNATFAR ddPTM_HeLa_A485_30min_R1 1 AHTLLSPPSANNATFAR 17 0 C9IZD2;C9J8Z7;C9JLE1;C9JHC7;F8W8R3;A0A087WWF6;P49005 C9IZD2 POLD2 DNA polymerase delta subunit 2 1 0 AHTLLS(1)PPSANNATFAR 141.83 6.66E-08 144940000 65405 86141 96096 80668 120470 97277 111620 124200 92904 91405 TRUE FALSE FALSE 79954.11661 96214.44062 131645.9093 85074.68858 108475.5838 102370.2733 87771.47515 93739.75526 111548.9806 68619.41568 1.165182125 1.40214602 1.918493592 1.239804911 1.580829314 1.4918558 1.279105546 1.366082097 1.62561834 1 16.06632922 -10.73465716 2.700251341 0.912571952 1.455460898 0.298027869 0.208109634 23321681.75 18758429.65 13684849.93 0.050721236 1.84E-11 10.73465716 0.542888947 AHTPT(ph)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A485_30min_R1 4 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.168)PT(0.669)PGIYMGRPT(0.13)HS(0.033)GGGGGGGGGGGGGGGGR;AHT(0.402)PT(0.597)PGIYMGRPT(0.001)HSGGGGGGGGGGGGGGGGR;AHT(0.283)PT(0.385)PGIY(0.33)MGRPT(0.003)HSGGGGGGGGGGGGGGGGR;AHT(0.335)PT(0.361)PGIY(0.21)MGRPT(0.073)HS(0.02)GGGGGGGGGGGGGGGGR ;;; 164.28 3.14E-14 1145290000 176387.6 132456 140953.5 147199 200199 180323.3 232174 255516 143243.3 209780 TRUE FALSE FALSE 215624.4131 147945.577 193098.0652 155240.1086 180266.4846 189764.7492 182568.1282 192850.3004 171990.9164 157485.7067 1.369168146 0.93942225 1.226130734 0.98574094 1.144652987 1.204964902 1.159267924 1.224557481 1.092104928 1 17.26486137 -8.009591774 22.54736713 0.999999982 1.148079962 0.147741203 0.115795306 220.9340529 519354.2474 0.103831506 0.02680918 9.78E-09 8.009591774 0.148079979 AHTPT(ph)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A486_30min_R1 1 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.32)PT(0.68)PGIYMGRPTHSGGGGGGGGGGGGGGGGR 135.79 1.50E-06 398970000 0 0 0 0 0 0 5389.7 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 4041.140054 0 0 0 0 AHTPTPGIY(ph)MGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A486_30min_R1 2 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.354)PT(0.249)PGIY(0.393)MGRPT(0.004)HSGGGGGGGGGGGGGGGGR;AHT(0.273)PT(0.273)PGIY(0.451)MGRPT(0.003)HSGGGGGGGGGGGGGGGGR ; 131.23 5.81E-06 586930000 309244 263331 209637 121018 325061 298761 395630 387320 244887 393300 TRUE FALSE FALSE 287567.5925 242463.6925 290814.0607 281736.0199 284288.8183 261902.9054 296639.1895 299135.6911 266114.0023 294815.12 0.975416703 0.822426246 0.986428582 0.955636264 0.964295245 0.888363207 1.006187164 1.014655188 0.902647063 1 18.16945099 -3.831567402 0.175339829 1.001156485 0.822948927 0.094658453 0.055755575 45.90656372 1.239997573 0.163603719 1.860129463 0.000147378 3.831567402 -0.178207559 AHTPTPGIYMGRPTHS(ph)GGGGGGGGGGGGGGGGR ddPTM_HeLa_A485_30min_R1 1 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHTPTPGIYMGRPT(0.162)HS(0.838)GGGGGGGGGGGGGGGGR 165.33 1.55E-14 126920000 34861 42312 39842 37431 48869 30615 52050 56919 33509 45005 TRUE FALSE FALSE 42615.70918 47260.02033 54581.21376 39475.76075 44003.43077 32217.95406 40929.09229 42959.526 40233.94894 33786.08176 1.261339196 1.398801455 1.615494042 1.168403043 1.302412961 0.953586577 1.211418731 1.271515481 1.190843887 1 15.04414143 -5.298424381 23.36065553 1.16806137 1.422570516 0.470465681 0.130067747 230.2851575 145453.2247 0.036725846 0.054476182 5.03E-06 5.298424381 0.254509146 AHTS(ph)PAPAPRPTPR ddPTM_HeLa_A485_30min_R1 3 AHTSPAPAPRPTPR 14 1 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 AHT(0.171)S(0.829)PAPAPRPTPR;AHT(0.412)S(0.588)PAPAPRPTPR;AHT(0.398)S(0.602)PAPAPRPTPR ;; 91.355 0.00063498 392570000 165529 227673 273812 168278 270408 191313 188852 179742 225154 258525 TRUE FALSE FALSE 202350.355 254297.3769 375106.4531 177470.601 243485.2301 201329.8529 148502.2274 135659.9927 270340.3426 194079.4753 1.042615942 1.310274445 1.932746636 0.914422304 1.254564552 1.037357776 0.765161938 0.698991959 1.392936281 1 17.56628803 AHTS(ph)PAPAPRPTPR ddPTM_HeLa_A486_30min_R1 2 AHTSPAPAPRPTPR 14 1 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 AHT(0.16)S(0.84)PAPAPRPTPR;AHT(0.18)S(0.82)PAPAPRPTPR ; 90.561 0.00066219 306180000 137784 186256 188177 52598 210225 155042 145120 157539 147669 126620 TRUE FALSE FALSE 128126.0531 171496.3962 261044.174 122450.8022 183856.6202 135914.4944 108809.4411 121670.8088 160469.0678 94913.52784 1.349924042 1.806869896 2.750336858 1.290130131 1.937096054 1.431982326 1.146406035 1.281912194 1.690687002 1 16.53432611 -6.375047734 4.10069751 1.301185138 1.847345562 0.29086207 0.40663577 0.321007305 9.2534284 0.150281552 0.131131859 4.22E-07 6.375047734 0.546160424 AHVIVMAATNRPNS(ph)IDPALRR ddPTM_HeLa_A485_30min_R1 2 AHVIVMAATNRPNSIDPALRR 21 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 AHVIVMAATNRPNS(1)IDPALRR;AHVIVMAAT(0.033)NRPNS(0.967)IDPALRR ; 236.02 1.40E-46 678460000 134327 188781 194272 136339 220357 213209 212348 270320 147218 199611 TRUE FALSE FALSE 164207.5777 210857.2958 266141.2971 143786.8543 198417.4834 224372.2936 166978.1151 204023.5962 176763.3022 149851.6513 1.095800923 1.407106922 1.776031795 0.959527994 1.324092739 1.497296104 1.114289457 1.361503823 1.179588618 1 17.19317546 -8.586404526 0.457378698 0.972305409 1.3516774 0.166055053 0.217998887 4.315626989 1.587553458 0.455155628 0.131001701 2.59E-09 8.586404526 0.379371991 AHVIVMAATNRPNS(ph)IDPALRR ddPTM_HeLa_A486_30min_R1 2 AHVIVMAATNRPNSIDPALRR 21 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 AHVIVMAAT(0.003)NRPNS(0.997)IDPALRR;AHVIVMAATNRPNS(1)IDPALRR ; 224.53 4.82E-36 526730000 253550 266290 252930 100011 341690 243900 296370 289610 251870 290360 TRUE FALSE FALSE 235777.4543 245188.2106 350871.2697 232830.6623 298832.0541 213810.0978 222215.0913 223672.1251 273702.2944 217651.9661 1.083277393 1.126515028 1.612074892 1.069738383 1.372981184 0.982348571 1.020965238 1.027659567 1.257522729 1 17.73166353 -6.269002905 24.98463357 1.057132068 1.255671609 0.258664408 0.165211059 845.1131495 2791660.427 0.057347576 0.051538578 5.38E-07 6.269002905 0.198539541 AHVIVMAATNRPNSIDPALR ddPTM_HeLa_A486_30min_R1 1 AHVIVMAATNRPNSIDPALR 20 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 114.34 7.55E-06 12864000 19470 21149 22706 21674 62334 28116 57343 58577 25052 42385 FALSE FALSE TRUE 18105.25354 19473.07622 31498.37129 50458.16734 54515.48848 24647.33378 42995.17489 45240.29583 27223.52753 31771.52012 0.569857957 0.612909805 0.991402714 1.588157166 1.715860251 0.775768162 1.353261497 1.423926071 0.856853164 1 14.9554465 -4.902282568 3.538233109 1.268913104 0.587860118 0.445769262 0.287343311 0.201490564 4.883113118 0.078605633 0.183738533 1.25E-05 4.902282568 -0.681052986 AHVIVMAATNRPNSIDPALRR ddPTM_HeLa_A485_30min_R1 2 AHVIVMAATNRPNSIDPALRR 21 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 128.79 5.90E-09 83431000 53138 40893 53564 70006 70397 61611 86416 81777 52368 87583 FALSE FALSE TRUE 64958.36478 45675.08063 73379.55258 73830.25052 63388.0275 64836.85669 67952.51565 61721.06253 62877.77725 65750.16995 0.987957367 0.694676237 1.116035938 1.122890642 0.964073972 0.98610934 1.033495666 0.938720958 0.956313532 1 16.004707 -4.770656977 24.9999999 1.014221803 0.841316774 0.381094789 0.08838249 174.0767636 472135.3555 0.023001737 0.048953256 1.70E-05 4.770656977 -0.172905029 AHVIVMAATNRPNSIDPALRR ddPTM_HeLa_A486_30min_R1 1 AHVIVMAATNRPNSIDPALRR 21 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 105.77 4.00E-06 45798000 17704 21695 19158 51656 35484 32037 49071 52822 19888 60031 FALSE FALSE TRUE 16463.04102 19975.80919 26576.49067 120257.7785 31033.26584 28084.60067 36792.91678 40795.5837 21611.90785 44998.84686 0.365854731 0.443918246 0.590603816 2.672463561 0.689645802 0.62411823 0.817641325 0.906591758 0.480276926 1 15.45760041 AIACLLFGGSR ddPTM_HeLa_A485_30min_R1 2 AIACLLFGGSR 11 0 B1AHB1;P33992 B1AHB1 MCM5 DNA helicase;DNA replication licensing factor MCM5 0 0 ; ; 219.51 5.34E-20 43886000 29081 37381 39078 27288 40212 33019 42278 37005 30100 40057 FALSE FALSE TRUE 35549.96812 41752.38278 53534.57837 28778.67434 36208.35209 34747.82378 33244.95992 27929.46573 36140.79391 30071.52709 1.18218034 1.388435733 1.780241429 0.957007413 1.204074272 1.155505794 1.105529487 0.928767789 1.201827689 1 14.87611051 -5.284405789 24.99997061 1.085500605 1.444100905 0.520869739 0.163086229 621.7242615 676773.4049 0.046062571 0.068373526 5.20E-06 5.284405789 0.358600301 AIACLLFGGSR ddPTM_HeLa_A486_30min_R1 2 AIACLLFGGSR 11 0 B1AHB1;P33992 B1AHB1 MCM5 DNA helicase;DNA replication licensing factor MCM5 0 0 ; ; 188.66 3.34E-09 63834000 43865 42265 43311 17364.4 50442 39917 44717 43510 42282 45937 FALSE FALSE TRUE 40790.29002 38915.76747 60082.17911 40425.20075 44115.09401 34992.44639 33528.33363 33603.72282 45947.0378 34434.0762 1.184590804 1.130152795 1.744846551 1.173988247 1.281146436 1.016215628 0.97369633 0.975885708 1.334347916 1 15.07154935 -6.121188745 2.787820757 1.052908441 1.323099466 0.289968138 0.188244207 0.36245039 5.453778898 0.068094082 0.068903491 7.57E-07 6.121188745 0.270191026 AIAELGIYPAVDPLDSTSR ddPTM_HeLa_A486_30min_R1 1 AIAELGIYPAVDPLDSTSR 19 0 P06576;H0YH81 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 124.07 3.24E-06 10928000 8271.3 11457 11361 5097.8 13667 10390 12527 12196 12001 11337 FALSE FALSE TRUE 7691.524583 10549.10559 15760.28346 11867.93603 11952.75742 9108.187438 9392.612103 9419.237037 13041.25634 8498.141409 0.905083149 1.241342676 1.854556508 1.396533131 1.406514301 1.071785818 1.105254861 1.108387891 1.534601005 1 13.05293163 -6.248713925 23.73764836 1.167108218 1.383584557 0.126382369 0.255155006 842.7177684 1571976.899 0.088341338 0.087694837 5.64E-07 6.248713925 0.216476339 AICDHVR ddPTM_HeLa_A485_30min_R1 2 AICDHVR 7 0 B8ZZ51;B9A041;A0A5K1VW95;P40925-2;P40925;P40925-3 B8ZZ51 MDH1 "Malate dehydrogenase, cytoplasmic" 0 0 ; ; 145.04 0.0043896 269450000 135879 203050 220230 154537 256910 218950 239460 265600 192990 228920 FALSE FALSE TRUE 166104.8148 226794.9312 301702.2415 162978.965 231331.1383 230413.8834 188297.4148 200461.1836 231721.3228 171854.457 0.966543538 1.319691879 1.755568327 0.948354601 1.346087512 1.340750118 1.095679554 1.166459032 1.348357947 1 17.39082774 -12.70319617 0.238738711 0.265479584 1.290546554 0.099051174 0.222140198 201.0963308 3.517995095 72.21234047 0.365182842 1.98E-13 12.70319617 1.02506697 AICDHVR ddPTM_HeLa_A486_30min_R1 4 AICDHVR 7 0 B8ZZ51;B9A041;A0A5K1VW95;P40925-2;P40925;P40925-3 B8ZZ51 MDH1 "Malate dehydrogenase, cytoplasmic" 0 0 ;;; ;;; 143 0.0048568 322775000 274522 335569 322620 110786 472853 297025 342880 362681 307789 370766 FALSE FALSE TRUE 255279.4254 308977.2903 447547.1041 257915.4068 413543.3676 260381.0754 257087.7974 280106.4536 334468.3983 277923.7803 0.918523147 1.111733908 1.610323174 0.928007695 1.48797403 0.936879439 0.925029866 1.007853496 1.203453688 1 18.08432976 AICGLT(ph)PGRR ddPTM_HeLa_A485_30min_R1 6 AICGLTPGRR 10 1 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR ;;;;; 145.31 4.64E-06 3605190000 1392290 1740550 1700590 1284380 2240940 1642030 1942230 2220630 1512000 1677820 TRUE FALSE FALSE 1702000.107 1944092.182 2329709.008 1354542.427 2017824.145 1728004.152 1527256.694 1676017.011 1815444.531 1259570.352 1.351254501 1.543456607 1.849606102 1.075400374 1.601993999 1.371899671 1.212521946 1.330625961 1.44132047 1 20.26450027 -12.61760865 0.114995094 1.20E-10 1.676372273 0.318833535 0.196837028 128.7110398 1.345222321 33.14008787 2.352982317 2.41E-13 12.61760865 1.676372273 AICGLT(ph)PGRR ddPTM_HeLa_A486_30min_R1 6 AICGLTPGRR 10 1 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR;AICGLT(1)PGRR ;;;;; 158.42 9.63E-07 3667880000 1451700 1777040 1761130 615646 2109730 1547970 1877580 1810400 1382310 1485750 TRUE FALSE FALSE 1349943.327 1636220.879 2443086.701 1433255.001 1845107.991 1356997.2 1407789.625 1398211.441 1502129.744 1113708.529 1.21211546 1.46916436 2.193649987 1.286921096 1.656724306 1.21844914 1.264055709 1.255455448 1.348763796 1 20.08694028 -6.267909704 24.1564725 1.236230187 1.578081174 0.302339458 0.261840839 444.0227386 1657719.424 0.091908889 0.083072331 5.40E-07 6.267909704 0.341850987 AIDGLNR ddPTM_HeLa_A485_30min_R1 1 AIDGLNR 7 0 P52895;B4DK69;Q04828 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 120.52 0.010339 34261000 67448 92925 100980 69108 105560 81244 96797 90120 83332 93710 FALSE FALSE TRUE 82451.57491 103791.7704 138336.7041 72883.19505 95050.07576 85497.81021 76115.53019 68017.9287 100055.968 70349.8216 1.172022516 1.475366505 1.966411584 1.036011086 1.351106138 1.215323767 1.081957686 0.966852895 1.42226328 1 16.10225914 -5.303413203 24.9999841 1.159824346 1.531677709 0.376238369 0.226767393 509.3451997 303369.4772 0.06392583 0.094818158 4.97E-06 5.303413203 0.371853363 AIEPPPLDAVIEAEHTLR ddPTM_HeLa_A485_30min_R1 3 AIEPPPLDAVIEAEHTLR 18 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ;; ;; 189.42 5.35E-18 70015100 56113.7 84263.4 85857 64103.8 91060 75392.8 85260 101597 72754.8 77194 FALSE FALSE TRUE 68595.99898 94117.27164 117619.0771 67605.62827 81993.74667 79340.25043 67043.50449 76680.17645 87356.02101 57950.95645 1.183690541 1.624084871 2.029631335 1.166600733 1.414881681 1.369093028 1.156900742 1.323190869 1.507412929 1 15.82254485 -5.313056832 24.99996519 1.294929402 1.613633335 0.300069825 0.233742403 430.9504351 208721.944 0.065652179 0.097377999 4.86E-06 5.313056832 0.318703934 AIEPPPLDAVIEAEHTLR ddPTM_HeLa_A486_30min_R1 2 AIEPPPLDAVIEAEHTLR 18 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 130.39 2.94E-05 40144000 52010 71008 65375 25105 94677 60001 70038 68262 60134 60790 FALSE FALSE TRUE 48364.36758 65381.06747 90689.9508 58445.70874 82801.72783 52598.68667 52513.75161 52720.23275 65346.46354 45567.78832 1.061371845 1.434808883 1.990220595 1.28261017 1.817110965 1.154295361 1.152431433 1.156962729 1.434049489 1 15.47572673 -6.296335599 24.93652056 1.187663125 1.52588933 0.293987042 0.261321908 793.6761459 567151.3142 0.09155911 0.080751065 5.05E-07 6.296335599 0.338226205 AIEPQKEEADENYNS(ph)VNTR ddPTM_HeLa_A485_30min_R1 1 AIEPQKEEADENYNSVNTR 19 1 Q12846;C9JFM5;Q12846-2 Q12846 STX4 Syntaxin-4 1 0 AIEPQKEEADENYNS(0.982)VNT(0.018)R 86.946 0.00010549 0 87662 77689 47800 95180 79945 87766 130220 118990 62842 187730 TRUE FALSE FALSE 107162.1095 86774.05275 65483.20912 100379.4424 71985.3951 92361.29205 102397.4332 89807.51593 75453.81298 140932.3659 0.760379695 0.615714156 0.4646428 0.712252588 0.510779725 0.655358983 0.726571448 0.637238404 0.535390238 1 17.10464345 -10.85951515 2.659436155 1.159502277 0.622868888 0.60136088 0.091770453 41028810.72 26190404.92 41431892.54 0.022801131 1.38E-11 10.85951515 -0.536633388 AIEQADLLQEEDES(ph)PR ddPTM_HeLa_A486_30min_R1 2 AIEQADLLQEEDESPR 16 0 A0A2R8YGH5;H7C1E4;P61966 A0A2R8YGH5 AP1S1 AP-1 complex subunit sigma-1A 1 0 AIEQADLLQEEDES(1)PR;AIEQADLLQEEDES(1)PR ; 264.92 2.11E-55 141780000 181632 225779 189348 60033 240350 216671 211718 217890 170310 196881 TRUE FALSE FALSE 168900.5347 207887.4498 262668.6165 139759.8579 210203.0618 189940.335 158743.9171 168281.2035 185072.6079 147580.7161 1.14446209 1.408635594 1.779830207 0.947006232 1.424326073 1.287026788 1.075641325 1.14026553 1.254043298 1 17.1711447 -6.436593619 0.722847382 1.100768699 1.388866731 0.190210839 0.210156469 1.203395083 1.334801753 0.163214232 0.137343846 3.66E-07 6.436593619 0.288098031 AIGGIILT(ph)ASHNPGGPNGDFGIK ddPTM_HeLa_A485_30min_R1 1 AIGGIILTASHNPGGPNGDFGIK 23 0 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 0 AIGGIILT(0.5)AS(0.5)HNPGGPNGDFGIK 173.96 1.10E-14 40032000000 132750 108180 141110 186500 218130 113430 211480 160580 169710 286280 TRUE FALSE FALSE 162279.7795 120830.71 193312.4611 196688.0228 196412.2113 119369.0194 166295.5704 121197.5032 203769.2403 214915.6646 0.75508586 0.562223839 0.899480554 0.915187002 0.913903655 0.55542261 0.773771287 0.563930523 0.948135822 1 17.71341111 -7.936842039 9.322487859 0.999903796 0.748046324 0.320196457 0.135879981 0.34640372 46.37136224 0.136128766 0.035177042 1.16E-08 7.936842039 -0.251857472 AIGGIILTAS(ph)HNPGGPNGDFGIK ddPTM_HeLa_A485_30min_R1 4 AIGGIILTASHNPGGPNGDFGIK 23 0 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 0 AIGGIILT(0.029)AS(0.971)HNPGGPNGDFGIK;AIGGIILT(0.002)AS(0.998)HNPGGPNGDFGIK;AIGGIILT(0.008)AS(0.992)HNPGGPNGDFGIK;AIGGIILTAS(1)HNPGGPNGDFGIK ;;; 255.7 3.54E-61 40379500000 955815 804064 878750 1292870 1309580 903557 1293760 1033150 1017729 1686250 TRUE FALSE FALSE 1168432.749 898092.2904 1203836.193 1363496.214 1179193.617 950865.8474 1017337.607 779768.3426 1221977.875 1265898.908 0.923006365 0.709450245 0.950973403 1.077097236 0.931506939 0.751138848 0.80364838 0.615979947 0.96530447 1 20.27173077 -6.249627807 24.02735662 0.801740205 0.917423533 0.091944082 0.131618736 898.7732178 1828303.249 0.044236638 0.043868893 5.63E-07 6.249627807 0.115683329 AIGGIILTAS(ph)HNPGGPNGDFGIK ddPTM_HeLa_A486_30min_R1 8 AIGGIILTASHNPGGPNGDFGIK 23 0 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 0 AIGGIILT(0.001)AS(0.999)HNPGGPNGDFGIK;AIGGIILT(0.008)AS(0.992)HNPGGPNGDFGIK;AIGGIILT(0.001)AS(0.999)HNPGGPNGDFGIK;AIGGIILT(0.006)AS(0.994)HNPGGPNGDFGIK;AIGGIILT(0.013)AS(0.987)HNPGGPNGDFGIK;AIGGIILT(0.027)AS(0.973)HNPGGPNGDFGIK;AIGGIILT(0.025)AS(0.975)HNPGGPNGDFGIK;AIGGIILTAS(1)HNPGGPNGDFGIK ;;;;;;; 271.6 8.32E-75 59428467000 1234487 1616711 1137121 640434 1633598 1631859 1911525 1911351 1353529 1735237 TRUE FALSE FALSE 1147955.836 1488596.932 1577444.704 1490962.718 1428696.906 1430536.828 1433241.227 1476178.102 1470853.984 1300722.361 0.88255255 1.144438642 1.212745127 1.146257466 1.098387288 1.099801827 1.101880978 1.134891001 1.1307978 1 20.31088162 -4.258635727 24.82497921 1.12504888 0.882552453 0.655897452 0.051155202 141.0206594 1248595.748 0.012606252 0.084786918 5.51E-05 4.258635727 -0.242496427 AIGLS(ph)PMSFPTADLTLK ddPTM_HeLa_A485_30min_R1 1 AIGLSPMSFPTADLTLK 17 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 AIGLS(0.988)PMS(0.012)FPTADLTLK 216.26 5.21E-34 39355000 26539 30439 21911 29624 42261 29502 26086 35737 26534 35554 TRUE FALSE FALSE 32442.50899 33998.57627 30016.79069 31242.28411 38053.34645 31046.6791 20512.513 26972.44472 31859.13042 26691.04212 1.215483039 1.273782272 1.124601676 1.17051571 1.425697291 1.163187221 0.768516752 1.01054296 1.193626321 1 14.70406801 -6.537138066 24.99589602 0.99002172 1.23940122 0.487701862 0.120592074 208.7808508 365979.4004 0.046946195 0.036379911 2.90E-07 6.537138066 0.2493795 AIGLS(ph)PMSFPTADLTLK ddPTM_HeLa_A486_30min_R1 2 AIGLSPMSFPTADLTLK 17 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 AIGLS(0.993)PMS(0.007)FPTADLTLK;AIGLS(0.968)PMS(0.031)FPT(0.001)ADLTLK ; 110.38 0.00015863 99242000 264780 262930 171279 106869 258290 211915 261440 251820 158375 253082 TRUE FALSE FALSE 246220.2893 242094.4692 237602.8158 248796.4329 225892.8597 185771.0819 196024.9468 194486.0832 172103.0725 189708.6199 1.297886672 1.276138477 1.252461886 1.311466147 1.190735876 0.979244285 1.033294886 1.025183164 0.907196903 1 17.53342571 -6.125296326 3.072929944 0.991947787 1.280738578 0.937326027 0.036338848 0.061136474 1.099033914 0.012771002 0.012895353 7.49E-07 6.125296326 0.288790791 AIGNNSATS(ph)PR ddPTM_HeLa_A485_30min_R1 3 AIGNNSATSPR 11 0 A0A1B0GV57;Q9NYJ8-2;Q9NYJ8 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 0 AIGNNSAT(0.001)S(0.999)PR;AIGNNSATS(1)PR;AIGNNSAT(0.014)S(0.986)PR ;; 154.85 3.76E-07 1413780000 1303030 1819140 1980930 1332850 2354820 1663090 1912700 2087280 1709390 1762910 TRUE FALSE FALSE 1592884.528 2031872.599 2713758.44 1405660.221 2120365.853 1750166.821 1504036.02 1575371.307 2052448.894 1323448.981 1.203585896 1.535285929 2.050519876 1.062118934 1.602151562 1.322428629 1.136451833 1.190352881 1.550833408 1 20.33587115 -6.202893786 1.285301599 1.232192537 1.529150146 0.161098859 0.278605915 0.835011337 2.816761616 0.132284918 0.125424405 6.27E-07 6.202893786 0.29695761 AIGNNSATS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AIGNNSATSPR 11 0 A0A1B0GV57;Q9NYJ8-2;Q9NYJ8 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 0 AIGNNSATS(1)PR;AIGNNSAT(0.001)S(0.999)PR ; 162.52 6.79E-08 841330000 1136260 1373730 1504570 473590 1859190 1295500 1423680 1469100 1225820 1334190 TRUE FALSE FALSE 1056614.042 1264870.632 2087179.798 1102541.454 1625993.054 1135674.382 1067460.206 1134618 1332075.065 1000100.14 1.056508243 1.26474398 2.086970809 1.102431057 1.625830243 1.135560667 1.067353321 1.134504391 1.331941684 1 19.93171303 -6.289178879 22.90021181 1.138120958 1.436866579 0.210310649 0.283929595 427.6353285 353029.8156 0.100061311 0.08827796 5.14E-07 6.289178879 0.298745622 AIGPHDVLATLLNNLK ddPTM_HeLa_A485_30min_R1 1 AIGPHDVLATLLNNLK 16 0 O75533;H7C341 O75533 SF3B1 Splicing factor 3B subunit 1 0 0 132.24 5.31E-06 11714000 12251 14842 13563 13635 18387 14370 18228 17300 11324 21644 FALSE FALSE TRUE 14976.19268 16577.64279 18580.5181 14379.84552 16556.32572 15122.39098 14333.43889 13057.14787 13596.62293 16248.54913 0.92169415 1.020253726 1.143518597 0.884992587 1.018941789 0.930691772 0.882136539 0.80358854 0.83678997 1 13.98802328 -6.537665518 2.077762935 0.861857393 1.002682794 0.312455287 0.080206868 0.348379051 3.029186172 0.035557833 0.027022723 2.90E-07 6.537665518 0.140825401 AIGPHDVLATLLNNLK ddPTM_HeLa_A486_30min_R1 2 AIGPHDVLATLLNNLK 16 0 O75533;H7C341 O75533 SF3B1 Splicing factor 3B subunit 1 0 0 ; ; 187.97 7.60E-14 27361000 53269 59558 41399 19830.7 61132 56283 66872 67481 49056 68592 FALSE FALSE TRUE 49535.11818 54838.40717 57429.8015 46166.87179 53464.25453 49339.3757 50139.9183 52117.0494 53308.21358 51416.11674 0.963416168 1.066560655 1.116961084 0.897906624 1.039834548 0.959609143 0.975179019 1.013632548 1.036799684 1 15.64993303 -5.245751716 24.9983093 0.989880825 1.050737424 0.216972112 0.052168979 1249.564301 1991180.069 0.013926676 0.024010043 5.68E-06 5.245751716 0.060856599 AIGS(ph)SPLGSGEGLLGLS(ph)PGPNGHSHLLK ddPTM_HeLa_A485_30min_R1 1 AIGSSPLGSGEGLLGLSPGPNGHSHLLK 28 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 2 0 AIGS(0.499)S(0.499)PLGS(0.002)GEGLLGLS(0.975)PGPNGHS(0.025)HLLK 106.66 0.00018103 105740000 69968 75662 71037 77937 111580 82010 92263 100570 75145 107100 TRUE FALSE FALSE 85532.14021 84510.01273 97316.5424 82194.50096 100470.7034 86303.91679 72550.25633 75905.04981 90225.91223 80401.94103 1.063806907 1.051094186 1.210375535 1.022294983 1.249605446 1.073405887 0.902344588 0.944069867 1.122185747 1 16.29494271 -6.534090413 23.74668658 0.987544277 1.119915359 0.340215176 0.08357589 133.8982976 283596.0827 0.031240948 0.024225726 2.92E-07 6.534090413 0.132371082 AIGS(ph)SPLGSGEGLLGLS(ph)PGPNGHSHLLK ddPTM_HeLa_A486_30min_R1 1 AIGSSPLGSGEGLLGLSPGPNGHSHLLK 28 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 2 0 AIGS(0.5)S(0.5)PLGSGEGLLGLS(0.975)PGPNGHS(0.025)HLLK 152.87 1.05E-09 111960000 202760 215620 148660 71240 216100 205740 228510 227360 163660 218290 TRUE FALSE FALSE 188547.5711 198533.4859 206225.1333 165850.3203 188994.7229 180357.8906 171334.3811 175595.0912 177846.1806 163628.7632 1.152288677 1.213316547 1.260323242 1.013576813 1.155021399 1.102238305 1.047092074 1.073130957 1.086888253 1 17.32006685 -5.42835333 0.308822572 1.015214012 1.272827994 0.486838105 0.057484254 3.239302675 0.436779664 0.071498063 0.299804914 3.73E-06 5.42835333 0.257613982 AIGSASEGAQSSLQEVYHK ddPTM_HeLa_A485_30min_R1 1 AIGSASEGAQSSLQEVYHK 19 0 P28066;P28066-2 P28066 PSMA5 Proteasome subunit alpha type-5 0 0 216.16 4.09E-29 12725000 9851.9 9531.5 12620 14677 17403 9792.7 14321 12805 14328 19431 FALSE FALSE TRUE 12043.42117 10646.12601 17288.66316 15478.76735 15670.29621 10305.43063 11261.20136 9664.553673 17203.49818 14587.2093 0.825615162 0.729826096 1.18519333 1.061119164 1.074249083 0.706470334 0.771991484 0.662536163 1.179354997 1 13.83241629 -6.252716913 24.9179764 0.837224159 0.978008166 0.074289117 0.184209304 1449.276601 4140235.705 0.063196054 0.062269877 5.59E-07 6.252716913 0.140784007 AIGSS(ph)PLGSGEGLLGLS(ph)PGPNGHSHLLK ddPTM_HeLa_A485_30min_R1 1 AIGSSPLGSGEGLLGLSPGPNGHSHLLK 28 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 2 0 AIGS(0.462)S(0.537)PLGSGEGLLGLS(0.975)PGPNGHS(0.025)HLLK 108.9 0.00015671 102760000 68746 75081 66749 70843 97480 82169 94268 102780 71446 101910 TRUE FALSE FALSE 84038.31053 83861.06983 91442.23276 74712.97371 87774.54893 86471.24178 74126.8717 77573.04385 85784.55686 76505.71251 1.098457981 1.096141282 1.195234052 0.976567256 1.147294052 1.13025863 0.968906364 1.013951002 1.121283026 1 16.22327985 -6.745170564 24.99907131 1.027197667 1.106686207 0.282198477 0.063498307 327.8969717 503855.2136 0.024034064 0.018556941 1.80E-07 6.745170564 0.07948854 AIGSS(ph)PLGSGEGLLGLS(ph)PGPNGHSHLLK ddPTM_HeLa_A486_30min_R1 1 AIGSSPLGSGEGLLGLSPGPNGHSHLLK 28 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 2 0 AIGS(0.158)S(0.841)PLGS(0.001)GEGLLGLS(0.996)PGPNGHS(0.004)HLLK 152.52 1.10E-09 117440000 93116 113090 76186 40184 102810 101230 110300 118150 88237 116540 TRUE FALSE FALSE 86589.04925 104128.3365 105687.2595 93550.38279 89914.61113 88741.27183 82701.77337 91249.8242 95885.45421 87357.62545 0.991201956 1.191977644 1.209822943 1.070889717 1.02927032 1.015838874 0.946703541 1.044554768 1.097619741 1 16.41464602 -5.526217417 4.349950371 1.021625877 1.138281477 0.35647054 0.065023344 0.21188064 9.867637965 0.01970588 0.02745264 2.98E-06 5.526217417 0.1166556 AIGSS(ph)PLGSGEGLLGLSPGPNGHSHLLK ddPTM_HeLa_A485_30min_R1 2 AIGSSPLGSGEGLLGLSPGPNGHSHLLK 28 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 AIGS(0.167)S(0.74)PLGS(0.093)GEGLLGLSPGPNGHSHLLK;AIGS(0.177)S(0.782)PLGS(0.041)GEGLLGLSPGPNGHSHLLK ; 240.12 4.77E-50 741560000 815130 1026290 873140 627910 1137930 976240 1089020 1302600 842780 924360 TRUE FALSE FALSE 996452.8563 1146305.688 1196150.82 662211.1333 1024633.694 1027354.417 856341.9805 983135.3076 1011918.216 693934.0636 1.43594746 1.651894248 1.72372403 0.954285383 1.476557713 1.480478436 1.234039407 1.416756086 1.458233957 1 19.40443906 -13.09372072 0.119242586 7.53E-15 1.633892908 0.298930634 0.199714512 163.7255401 1.569831672 42.94424093 2.151951204 8.06E-14 13.09372072 1.633892908 AIGSS(ph)PLGSGEGLLGLSPGPNGHSHLLK ddPTM_HeLa_A486_30min_R1 2 AIGSSPLGSGEGLLGLSPGPNGHSHLLK 28 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 AIGS(0.163)S(0.623)PLGS(0.214)GEGLLGLSPGPNGHSHLLK;AIGS(0.186)S(0.769)PLGS(0.046)GEGLLGLSPGPNGHSHLLK ; 200.04 1.51E-28 1012630000 1013200 1146090 879930 147940 1311960 949390 1060730 1062040 927990 814010 TRUE FALSE FALSE 942179.9122 1055269.654 1220662.461 344411.7965 1147401.743 832263.9145 795324.1347 820236.6762 1008428.92 610176.5977 1.544110206 1.72944957 2.000506847 0.564446093 1.880442068 1.363972197 1.303432707 1.344261119 1.652683705 1 19.21886732 -5.496853691 0.043939891 7.79E-13 3.027356482 0.132907212 0.377302438 421.8243748 4.703756403 131.4300444 193.7688122 3.19E-06 5.496853691 3.027356482 AIGSTSKPQES(ph)PK ddPTM_HeLa_A485_30min_R1 5 AIGSTSKPQESPK 13 1 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 AIGSTSKPQES(1)PK;AIGST(0.001)S(0.001)KPQES(0.998)PK;AIGSTSKPQES(1)PK;AIGSTSKPQES(0.999)PK;AIGSTSKPQES(1)PK ;;;; 172.42 1.59E-12 10716280000 6452930 4815750 3031490 12902050 6205420 6103170 10857240 8599180 4613660 16741100 TRUE FALSE FALSE 7888362.016 5378910.071 4152964.302 13606856.32 5587586.596 6422722.544 8537501.979 6490217.622 5539579.243 12567851.87 0.627661919 0.427989614 0.330443448 1.082671603 0.444593607 0.511043782 0.679312747 0.516414236 0.440773754 1 23.58323475 -10.03343235 4.070005342 1.000048469 0.563975976 0.304393328 0.198476253 85555305.22 167213554.7 59522.6216 0.050120728 9.26E-11 10.03343235 -0.436072493 AIGSTSKPQES(ph)PK ddPTM_HeLa_A486_30min_R1 5 AIGSTSKPQESPK 13 1 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 AIGSTSKPQES(1)PK;AIGSTSKPQES(1)PK;AIGSTSKPQES(1)PK;AIGST(0.001)S(0.004)KPQES(0.995)PK;AIGSTSKPQES(1)PK ;;;; 152.94 2.14E-08 9440770000 7441380 6697960 2523210 6627440 4766610 8408350 12144100 10071600 4715800 16744300 TRUE FALSE FALSE 6919777.689 6167189.256 3500264.486 15429015.25 4168737.327 7371013.267 9105517.733 7778516.541 5124569.341 12551418.29 0.551314404 0.491353974 0.278874021 1.229264685 0.33213277 0.587265367 0.725457277 0.619732078 0.408286077 1 23.58134706 -10.53275712 3.270185213 1.012264529 0.586327121 0.199398221 0.251978027 342266154 404612527 36945905.3 0.062180838 2.93E-11 10.53275712 -0.425937407 AIGSTSKPQES(ph)PKGK ddPTM_HeLa_A485_30min_R1 2 AIGSTSKPQESPKGK 15 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 AIGS(0.027)T(0.027)S(0.146)KPQES(0.8)PKGK;AIGS(0.007)T(0.006)S(0.006)KPQES(0.982)PKGK ; 90.654 0.00052074 1916290000 1076620 735400 450430 2318600 1687490 1491450 2910000 2883900 940610 3729200 TRUE FALSE FALSE 1316110.405 821398.6329 617062.801 2445259.247 1519477.57 1569540.016 2288254.727 2176619.003 1129381.799 2799579.071 0.470110103 0.293400762 0.220412707 0.873438179 0.542752154 0.560634287 0.817356706 0.77748081 0.403411288 1 21.4167785 -5.254092179 24.99410353 0.692643511 0.324517136 0.499070663 0.175059401 481.6161221 1638384.085 0.046389732 0.078299701 5.57E-06 5.254092179 -0.368126375 AIGSTSKPQES(ph)PKGK ddPTM_HeLa_A486_30min_R1 1 AIGSTSKPQESPKGK 15 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 AIGS(0.072)T(0.072)S(0.059)KPQES(0.798)PKGK 99.021 0.00029321 1179300000 1054000 926230 351620 1243700 1096600 1414600 2454400 2243300 638010 2369300 TRUE FALSE FALSE 980120.0429 852832.1615 487776.6807 2895396.453 959054.2026 1240081.035 1840283.16 1732549.561 693313.2205 1776011.858 0.551865709 0.480195083 0.274647198 1.63027991 0.540004391 0.698239164 1.036188554 0.975528149 0.390376459 1 20.76020978 AIGSVPERS(ph)PAGVDLSLTGLPPPVSR ddPTM_HeLa_A485_30min_R1 1 AIGSVPERSPAGVDLSLTGLPPPVSR 26 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 AIGSVPERS(1)PAGVDLSLTGLPPPVSR 241.02 8.95E-50 113780000 59446 72235 85866 55509 104770 84985 80626 93294 70680 87511 TRUE FALSE FALSE 72669.55761 80682.25489 117631.4066 58541.31611 94338.73093 89434.68319 63399.59645 70413.50022 84864.82768 65696.11822 1.106146902 1.22811297 1.790538159 0.891092468 1.435986379 1.361338929 0.965043265 1.071806099 1.291778418 1 16.00352051 -6.749877549 24.79848582 1.088140776 1.308426266 0.17724205 0.231882485 357.0250568 765768.8504 0.087943691 0.067521245 1.78E-07 6.749877549 0.220285491 AIGSVPERS(ph)PAGVDLSLTGLPPPVSR ddPTM_HeLa_A486_30min_R1 2 AIGSVPERSPAGVDLSLTGLPPPVSR 26 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 AIGS(0.001)VPERS(0.971)PAGVDLS(0.004)LT(0.024)GLPPPVSR;AIGS(0.012)VPERS(0.988)PAGVDLSLTGLPPPVSR ; 159.42 1.03E-10 148325000 87160 86154 90648 35145 111104 84108 81899 99328 81624 80617 TRUE FALSE FALSE 81050.53409 79326.84327 125749.3332 81819.33613 97168.30032 73731.61011 61407.00396 76713.18272 88699.23404 60429.97847 1.341230564 1.312706794 2.080909781 1.35395276 1.607948617 1.220116438 1.016167894 1.269455735 1.467801847 1 15.88297681 -6.271468264 20.68142699 1.200390255 1.546545269 0.340625095 0.239583912 83.11100236 171387.5836 0.084814477 0.076033208 5.35E-07 6.271468264 0.346155014 AIK(ac)LRPIAVIKG ddPTM_HeLa_A485_30min_R1 1 AIKLRPIAVIKG 12 3 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 1 AIK(1)LRPIAVIKG 109.24 0.0011177 0 17774 23906 20619 11346 23421 26787 26226 34307 17835 21128 FALSE TRUE FALSE 21727.76498 26701.59875 28246.82613 11965.80325 21089.123 28189.5259 20622.60085 25893.15446 21414.32091 15861.17843 1.369870787 1.683456173 1.780878152 0.754408211 1.329606315 1.777265543 1.300193484 1.632486172 1.350109073 1 13.95321234 -8.02368413 22.46374995 0.999999981 1.452903065 0.182283072 0.28835659 970.3560588 920357.8678 0.285007345 0.07358858 9.47E-09 8.02368413 0.452903084 AIK(ac)LRPIAVIKG ddPTM_HeLa_A486_30min_R1 1 AIKLRPIAVIKG 12 3 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 1 AIK(1)LRPIAVIKG 119.76 0.00073531 0 24308 24222 22397 9260.3 31849 25824 27753 26557 18700 28102 FALSE TRUE FALSE 22604.13473 22302.5605 31069.71821 21558.44639 27854.20144 22638.09744 20808.90586 20510.55084 20320.93106 21065.07629 1.073062087 1.058745774 1.474939743 1.023421235 1.32229293 1.074674363 0.987839093 0.973675602 0.964673984 1 14.36256552 -6.531374998 4.416142208 0.982606247 1.191154364 0.379471742 0.125929527 0.216640305 10.53350392 0.047554788 0.038070995 2.94E-07 6.531374998 0.208548117 AIKVEQATKPS(ph)FESGR ddPTM_HeLa_A485_30min_R1 1 AIKVEQATKPSFESGR 16 2 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 AIKVEQAT(0.001)KPS(0.996)FES(0.002)GR 95.195 0.00034653 1351100000 460600 547030 306150 510330 801440 700990 1077100 1430400 446000 706860 TRUE FALSE FALSE 563058.8809 611000.4 419407.625 538208.0357 721645.8196 737692.7525 846968.7859 1079592.157 535508.109 530652.8108 1.06106831 1.151412727 0.790361638 1.014237605 1.359920846 1.390160831 1.596088381 2.034460452 1.00914967 1 19.01740873 -5.857828889 2.944168953 1.476941362 0.99475171 0.290758638 0.291587331 0.286740458 5.009840137 0.094587749 0.111680686 1.39E-06 5.857828889 -0.482189652 AILCLLLGGVER ddPTM_HeLa_A485_30min_R1 2 AILCLLLGGVER 12 0 J3KQ69;A0A499FHX9;P25205;P25205-2 J3KQ69 MCM3 DNA replication licensing factor MCM3 0 0 ; ; 213.45 3.01E-20 63341000 94138 119795 129572 87945 150689 101788 131212 135797 95913 124081 FALSE FALSE TRUE 115078.6733 133803.9832 177506.0747 92749.21266 135685.8741 107117.4623 103177.4843 102492.5728 115161.8593 93149.89024 1.235413944 1.436437368 1.905596177 0.995698572 1.456640193 1.149947273 1.10765009 1.100297301 1.236306978 1 16.50726645 -5.885925094 1.171922824 1.119743954 1.476765046 0.300379539 0.219072455 0.594052527 1.728163074 0.095517508 0.123222587 1.30E-06 5.885925094 0.357021091 AILCLLLGGVER ddPTM_HeLa_A486_30min_R1 2 AILCLLLGGVER 12 0 J3KQ69;A0A499FHX9;P25205;P25205-2 J3KQ69 MCM3 DNA replication licensing factor MCM3 0 0 ; ; 242.39 4.75E-29 136166000 110834 127413 112405 45824 147317 99949 128345 135008 111595 116567 FALSE FALSE TRUE 103065.1089 117316.3298 155931.2263 106680.5878 128839.1282 87618.30859 96231.72351 104269.6256 121268.1445 87377.86448 1.179533393 1.342632148 1.784562111 1.220910908 1.474505345 1.002751774 1.101328398 1.193318539 1.387858872 1 16.41498023 -6.250614358 24.74168998 1.146901228 1.408585389 0.335152759 0.185038213 787.4267473 1799745.303 0.062330636 0.061724194 5.62E-07 6.250614358 0.261684161 AILDAEPGPRPALQPS(ph)PSIR ddPTM_HeLa_A485_30min_R1 2 AILDAEPGPRPALQPSPSIR 20 1 B5MD46;Q9BXI6;Q9BXI6-2 B5MD46 TBC1D10A TBC1 domain family member 10A 1 0 AILDAEPGPRPALQPS(0.881)PS(0.119)IR;AILDAEPGPRPALQPS(0.976)PS(0.024)IR ; 110.9 1.27E-05 380500000 473120 482140 539980 508730 471620 439600 498000 400920 465040 717550 TRUE FALSE FALSE 578363.9118 538522.0789 739741.0724 536520.6317 424663.8568 462616.7762 391598.2317 302593.7414 558369.2624 538677.9905 1.07367281 0.999710566 1.373252825 0.995995086 0.788344548 0.858800219 0.726961633 0.561733998 1.036554811 1 19.03906359 -5.590622659 4.247539276 0.804715879 1.141698257 0.45797854 0.154998714 0.17752444 6.339966322 0.046059789 0.061223518 2.57E-06 5.590622659 0.336982378 AILDAEPGPRPALQPS(ph)PSIR ddPTM_HeLa_A486_30min_R1 1 AILDAEPGPRPALQPSPSIR 20 1 B5MD46;Q9BXI6;Q9BXI6-2 B5MD46 TBC1D10A TBC1 domain family member 10A 1 0 AILDAEPGPRPALQPS(0.928)PS(0.072)IR 149.18 7.52E-10 199040000 312200 445230 360210 102770 421210 385900 374290 377090 398590 383730 TRUE FALSE FALSE 290316.3922 409948.3533 499692.9588 239253.7537 368377.9142 338291.5815 280638.6832 291234.8388 433140.1021 287641.5103 1.00929936 1.425205815 1.737207395 0.83177756 1.280684119 1.176087489 0.975654323 1.012492385 1.505833082 1 18.13391236 -5.26888369 24.996705 1.116354398 1.394034356 0.22115631 0.239610646 859.3423155 2885521.493 0.066726342 0.101225875 5.38E-06 5.26888369 0.277679958 AILDAEPGPRPALQPS(ph)PSIRLPLDAPLPGSK ddPTM_HeLa_A485_30min_R1 1 AILDAEPGPRPALQPSPSIRLPLDAPLPGSK 31 2 B5MD46;Q9BXI6;Q9BXI6-2 B5MD46 TBC1D10A TBC1 domain family member 10A 1 0 AILDAEPGPRPALQPS(0.791)PS(0.209)IRLPLDAPLPGSK 72.792 0.0007089 225600000 40444 42322 29724 40595 48015 49201 67819 83267 41458 57201 TRUE FALSE FALSE 49440.62827 47271.18975 40720.14452 42812.60206 43234.45801 51777.08828 53328.91662 62845.63769 49778.24032 42941.84341 1.151339215 1.100818828 0.94826261 0.996990317 1.006814207 1.205749082 1.241886989 1.463505819 1.159201291 1 15.3900965 -6.370807306 3.968512651 1.251326603 1.036702043 0.324637827 0.120324175 0.240316932 6.648914637 0.043888774 0.038320423 4.26E-07 6.370807306 -0.21462456 AILIFNNHGKPR ddPTM_HeLa_A485_30min_R1 1 AILIFNNHGKPR 12 1 F5H459;Q92572 F5H459 AP3S1 AP-3 complex subunit sigma-1 0 0 104.52 0.0016229 5175800 10599 12692 12644 10471 14290 16853 17997 18801 11894 17339 FALSE FALSE TRUE 12956.71098 14176.21899 17321.54176 11043.00422 12867.23742 17735.39702 14151.79393 14190.02527 14281.0167 13016.7064 0.995390891 1.089078801 1.330716176 0.848371614 0.988517143 1.362510337 1.087202361 1.090139459 1.097129816 1 13.66807683 -8.574666468 1.751438664 1.000013456 1.102766672 0.039847354 0.144672532 21.58736274 61.00644985 0.141217573 0.039728029 2.66E-09 8.574666468 0.102753215 AILLPDLSEPNNEPLFS(ph)PASEVPR ddPTM_HeLa_A485_30min_R1 1 AILLPDLSEPNNEPLFSPASEVPR 24 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2;H7C4S1 Q8WYP5 AHCTF1 Protein ELYS 1 0 AILLPDLSEPNNEPLFS(0.977)PAS(0.023)EVPR 93.572 0.0015951 10238000 14057 16695 18351 13253 21477 15739 15095 19351 14708 18713 TRUE FALSE FALSE 17183.93115 18647.33502 25139.79855 13976.97783 19338.67447 16563.0697 11869.82994 14605.13691 17659.76069 14048.19349 1.223212876 1.327383129 1.7895396 0.994930618 1.376595111 1.179017766 0.844936393 1.039645199 1.257084102 1 13.778097 -6.07362494 1.276934854 1.043200741 1.391479843 0.311673883 0.208726818 0.539956364 1.818716705 0.095028855 0.100977927 8.44E-07 6.07362494 0.348279102 AILLPDLSEPNNEPLFS(ph)PASEVPR ddPTM_HeLa_A486_30min_R1 1 AILLPDLSEPNNEPLFSPASEVPR 24 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2;H7C4S1 Q8WYP5 AHCTF1 Protein ELYS 1 0 AILLPDLSEPNNEPLFS(0.889)PAS(0.111)EVPR 78.975 0.0043613 13921000 11844 13841 15224 6316.4 18980 13399 13396 14554 12523 13265 TRUE FALSE FALSE 11013.79676 12744.18875 21119.14051 14704.89841 16599.35142 11745.96761 10044.17911 11240.37191 13608.50372 9943.357659 1.107653686 1.281678603 2.12394457 1.478866487 1.669390963 1.181287852 1.010139578 1.130440269 1.368602457 1 13.27951739 -6.330649347 6.263273362 1.134706956 1.547790826 0.354771563 0.265664341 0.281878708 20.40765788 0.098705484 0.087067693 4.67E-07 6.330649347 0.41308387 AILVDLEPGTMDS(ph)VR ddPTM_HeLa_A485_30min_R1 2 AILVDLEPGTMDSVR 15 0 Q5JP53;P07437;G3V5W4;G3V2R8;G3V3R4;G3V2N6;A0A0B4J269;Q13509 Q5JP53;A0A0B4J269 TUBB;TUBB3 Tubulin beta chain;Tubulin beta-3 chain 1 0 AILVDLEPGT(0.001)MDS(0.999)VR;AILVDLEPGT(0.081)MDS(0.919)VR ; 136.51 8.33E-06 11549000 38293 58540 55816 45842 54477 54352 55978 59566 46803 59912 TRUE FALSE FALSE 46811.14574 65385.74377 76464.6611 48346.23238 49053.0786 57197.78668 44017.843 44957.3451 56195.9328 44977.041 1.040778688 1.453758236 1.700082073 1.074909138 1.09062485 1.271710753 0.978673608 0.99956209 1.249435969 1 15.45690113 -5.311681246 24.90586013 1.097304904 1.403761958 0.384193813 0.175859294 344.264913 170657.9453 0.049948327 0.074085443 4.88E-06 5.311681246 0.306457054 AILVDLEPGTMDS(ph)VR ddPTM_HeLa_A486_30min_R1 3 AILVDLEPGTMDSVR 15 0 Q5JP53;P07437;G3V5W4;G3V2R8;G3V3R4;G3V2N6;A0A0B4J269;Q13509 Q5JP53;A0A0B4J269 TUBB;TUBB3 Tubulin beta chain;Tubulin beta-3 chain 1 0 AILVDLEPGT(0.083)MDS(0.917)VR;AILVDLEPGT(0.015)MDS(0.985)VR;AILVDLEPGT(0.01)MDS(0.99)VR ;; 138.77 4.56E-06 38660000 110144 95171 99559 53256 113288 102905 97718 106517 93287 99963 TRUE FALSE FALSE 102423.4744 87629.30335 138110.9111 123982.6594 99078.36267 90209.62736 73267.92284 82265.40435 101373.1923 74931.61415 1.366892673 1.169457036 1.843159428 1.654610818 1.322250479 1.203892755 0.977797204 1.097873111 1.352876131 1 16.19328691 -6.128454213 2.809606245 1.11914568 1.506004161 0.466089181 0.191863648 0.270097612 4.1219617 0.07299357 0.073567977 7.44E-07 6.128454213 0.38685848 AILVDLEPGTMDSVR ddPTM_HeLa_A485_30min_R1 5 AILVDLEPGTMDSVR 15 0 Q5JP53;P07437;G3V5W4;G3V2R8;G3V3R4;G3V2N6;A0A0B4J269;Q13509 Q5JP53;A0A0B4J269 TUBB;TUBB3 Tubulin beta chain;Tubulin beta-3 chain 0 0 ;;;; ;;;; 346.14 2.67E-115 329923000 441047 621711 692348 439865 742942 628703 721369 803800 597143 671189 FALSE FALSE TRUE 539156.3836 694414.6933 948476.3362 463893.7112 668972.0859 661620.9169 567242.6201 606666.7897 716984.1228 503873.9346 1.070022374 1.378151648 1.882368329 0.920654313 1.327657654 1.313068352 1.125762976 1.204005105 1.422943466 1 18.9427033 -5.291206606 24.99994382 1.204698789 1.436978347 0.200358395 0.232335428 1190.639685 999953.4875 0.065262938 0.096816127 5.11E-06 5.291206606 0.232279558 AILVDLEPGTMDSVR ddPTM_HeLa_A486_30min_R1 5 AILVDLEPGTMDSVR 15 0 Q5JP53;P07437;G3V5W4;G3V2R8;G3V3R4;G3V2N6;A0A0B4J269;Q13509 Q5JP53;A0A0B4J269 TUBB;TUBB3 Tubulin beta chain;Tubulin beta-3 chain 0 0 ;;;; ;;;; 313.05 9.02E-81 225399000 336339 411488 427669 130180 536385 378335 422386 430931 370608 408826 FALSE FALSE TRUE 312763.373 378880.1923 593273.8902 303065.6189 469106.5917 331659.8743 316700.5553 332817.4185 402732.5998 306453.3086 1.020590622 1.23633905 1.935935666 0.988945495 1.530760408 1.082252549 1.033438199 1.086029777 1.314172791 1 18.22530776 -6.289182396 24.08418462 1.104196688 1.34994079 0.171892079 0.262401508 859.068832 745768.6073 0.091877798 0.081049287 5.14E-07 6.289182396 0.245744102 AIMTYVSCFYHAFSGAQK ddPTM_HeLa_A485_30min_R1 2 AIMTYVSCFYHAFSGAQK 18 0 K7EJH8 K7EJH8 ACTN4 0 0 ; ; 340.57 1.74E-104 66772000 93869 133273 127192 72093 177846 105712 153377 166862 105686 130446 FALSE FALSE TRUE 114749.8352 148858.118 174245.6137 76031.25804 160139.0278 111246.9169 120606.751 125938.8329 126896.2108 97928.21288 1.171775036 1.520073875 1.779319857 0.776397892 1.635269582 1.136004769 1.231583294 1.286032178 1.295808502 1 16.57943694 -13.75921333 0.092476729 7.57E-13 1.577714249 0.127076175 0.264287644 396.5316714 2.656715861 78.76446569 5.683266018 1.74E-14 13.75921333 1.577714249 AIMTYVSCFYHAFSGAQK ddPTM_HeLa_A486_30min_R1 3 AIMTYVSCFYHAFSGAQK 18 0 K7EJH8 K7EJH8 ACTN4 0 0 ;; ;; 335.54 1.31E-103 64368000 95840.4 113636.8 106843.4 30627.4 136934.7 104789 138804.7 123142.9 101329.3 102064.3 FALSE FALSE TRUE 89122.48288 104631.8061 148216.0258 71302.13502 119759.0731 91861.1986 104074.2959 95105.94986 110112.6053 76506.73495 1.16489722 1.367615625 1.937293834 0.931972003 1.565340269 1.200694274 1.360328551 1.24310559 1.439253752 1 16.22329913 -12.69288088 0.239859166 6.54E-13 1.401295693 0.147424394 0.253966094 161.7199495 2.848313439 79.76212986 0.398853403 2.03E-13 12.69288088 1.401295693 AIMTYVSSFY(ph)HAFSGAQK ddPTM_HeLa_A485_30min_R1 2 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 1 0 AIMTYVSSFY(0.999)HAFSGAQK;AIMTYVS(0.015)S(0.156)FY(0.829)HAFSGAQK ; 195.15 1.82E-17 102764000 93720 141027 124058 74423 186006 124340 148496 185119 131062 134621 TRUE FALSE FALSE 114567.6907 157518.8809 169952.2167 78488.54004 167486.5895 130850.2501 116768.6165 139718.275 157364.9412 101062.4622 1.13363249 1.558628965 1.681655216 0.776633958 1.657258154 1.294746311 1.155410366 1.382494271 1.557105752 1 16.62488771 -10.69066514 2.540135988 0.941739845 1.355868345 0.13824987 0.266103511 42332727.41 33605623.1 15824614.81 0.063990825 2.04E-11 10.69066514 0.4141285 AIMTYVSSFY(ph)HAFSGAQK ddPTM_HeLa_A486_30min_R1 1 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 1 0 AIMTYVS(0.001)S(0.031)FY(0.968)HAFSGAQK 155.1 2.61E-07 39939000 72551 84101 81602 14857 107920 77238 94218 104210 77410 61601 TRUE FALSE FALSE 67465.54955 77436.53047 113200.4798 34587.84683 94383.66729 67709.16086 70643.65986 80483.65789 84119.96113 46175.70864 1.461061487 1.676997121 2.45151581 0.749048533 2.044011236 1.466337233 1.529887942 1.742986957 1.821736224 1 15.49484648 -10.14066443 4.552201726 0.999919591 1.661515661 0.184824025 0.416070858 44761899.17 99713420.28 22032.29505 0.09511683 7.23E-11 10.14066443 0.66159607 AIMTYVSSFYHAFS(ph)GAQK ddPTM_HeLa_A486_30min_R1 1 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 1 0 AIMTYVSSFYHAFS(1)GAQK 61.511 0.014667 14668000 17238 15497 11940 5906 18306 13965 20072 22385 18737 15480 TRUE FALSE FALSE 16029.70522 14268.96128 16563.48776 13749.46647 16009.89078 12242.14029 15049.7733 17288.42416 20361.13825 11603.70724 1.381429649 1.229689873 1.427430684 1.184920145 1.379722053 1.055019748 1.296979748 1.489905235 1.754709751 1 13.50229818 -7.225371596 6.679539449 1.466780053 1.274148724 0.069807708 0.201448267 0.369945285 52.63712826 0.092106957 0.0517013 5.95E-08 7.225371596 -0.19263133 AIMTYVSSFYHAFSGAQK ddPTM_HeLa_A485_30min_R1 22 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ;;;;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;;;;; 343.34 1.03E-121 26907502800 15921655.4 24175493 23047833.3 8520828.6 30461694.9 18613850.8 25317629.6 27878530.7 17962224 19313957.2 FALSE FALSE TRUE 19463372.71 27002606.61 31574185.94 8986299.891 27428821.6 19588443.25 19908311.21 21041277.33 21567077.6 14499343.12 1.342362379 1.862333099 2.177628716 0.619772897 1.891728568 1.350988323 1.373049182 1.451188317 1.487452047 1 23.78948421 -11.69471403 0.099197894 5.84E-09 1.930438208 0.143177885 0.394325423 201.8414804 2.323715162 53.67858284 8.141243502 2.02E-12 11.69471403 1.930438202 AIMTYVSSFYHAFSGAQK ddPTM_HeLa_A486_30min_R1 16 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;; 336.31 8.86E-104 21770792000 12623934.6 14009755.6 14323823.9 3366456.67 17338606.9 12096437.5 14325159.4 13451078.7 12656535 10462066.8 FALSE FALSE TRUE 11739061.97 12899571.54 19870392.12 7837281.259 15163837.15 10604102.03 10740853 10388561.71 13753613.64 7842297.177 1.496890734 1.644871554 2.533746385 0.999360402 1.933596344 1.352167839 1.369605456 1.324683505 1.753773586 1 22.90284488 -5.92222189 1.11253453 1.380697856 1.790626922 0.151405527 0.40106938 0.978357625 2.578196236 0.180080779 0.22659958 1.20E-06 5.92222189 0.409929066 AIMTYVSSFYHAFSGAQKAETAANR ddPTM_HeLa_A485_30min_R1 2 AIMTYVSSFYHAFSGAQKAETAANR 25 1 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 274.97 1.13E-71 48944000 30064 42935 39724 10341.7 56963 33076 47470 85667 27773 28135 FALSE FALSE TRUE 36751.63308 47955.87477 54419.56065 10906.64088 51291.56371 34807.80821 37327.64671 64657.03393 33346.78635 21121.46229 1.740013669 2.270480808 2.576505353 0.516377168 2.428409691 1.647982878 1.767285153 3.061200643 1.578810496 1 14.3664221 -8.005697491 24.96003947 0.999999803 1.995994314 0.190197018 0.645150859 327.6760209 1435516.335 0.608636727 0.157149327 9.87E-09 8.005697491 0.995994511 AIMTYVSSFYHAFSGAQKAETAANR ddPTM_HeLa_A486_30min_R1 1 AIMTYVSSFYHAFSGAQKAETAANR 25 1 O43707;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 282.03 3.94E-72 19262000 17880 13025 13443 3489.3 25283 12795 13157 14363 9448.2 9682.4 FALSE FALSE TRUE 16626.70433 11992.85156 18648.48962 8123.266739 22111.77039 11216.48299 9864.979439 11092.85844 10267.17758 7257.864018 2.290853658 1.652394084 2.569418436 1.119236558 3.046594746 1.545424792 1.359212492 1.528391606 1.414627989 1 12.82532931 -6.501479669 24.66624158 1.381408761 2.098428082 0.374401182 0.498429002 733.6702857 845687.4462 0.164586161 0.143689715 3.15E-07 6.501479669 0.717019321 AINGPTS(ph)ASGDDISK ddPTM_HeLa_A486_30min_R1 1 AINGPTSASGDDISK 15 0 B4DXZ6;P51114-3;P51114;H7C4S4 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 AINGPT(0.005)S(0.766)AS(0.229)GDDISK 158.45 1.26E-07 0 60548 69809 61853 25101 94592 66713 73669 89589 64305 75972 TRUE FALSE FALSE 56303.89787 64277.0806 85804.13808 58436.39653 82727.38932 58482.62835 55236.23701 69191.54041 69879.00918 56948.11671 0.988687618 1.128695457 1.506707211 1.02613396 1.452679985 1.026945784 0.969939661 1.214992601 1.227064444 1 15.79736051 AIPELDAYEAEGLALDDEDVEELTAS(ph)QR ddPTM_HeLa_A485_30min_R1 6 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9J013;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AIPELDAYEAEGLALDDEDVEELT(0.008)AS(0.992)QR;AIPELDAYEAEGLALDDEDVEELT(0.191)AS(0.809)QR;AIPELDAYEAEGLALDDEDVEELT(0.006)AS(0.994)QR;AIPELDAYEAEGLALDDEDVEELT(0.001)AS(0.999)QR;AIPELDAYEAEGLALDDEDVEELT(0.219)AS(0.781)QR;AIPELDAYEAEGLALDDEDVEELT(0.006)AS(0.994)QR ;;;;; 137.71 1.21E-18 179802000 68178.2 111237.5 116377.2 72757.9 120972.8 99376.9 116305.2 117031.7 102929.7 108150.6 TRUE FALSE FALSE 83344.20538 124245.758 159429.9691 76732.47984 108928.3233 104580.1208 91455.64389 88329.49208 123586.7467 81190.64578 1.026524726 1.530296462 1.963649477 0.945090153 1.34163637 1.288080909 1.126430798 1.087926955 1.522179624 1 16.3090259 -5.288235854 24.93633835 1.199087924 1.509171149 0.235058627 0.263506999 1044.59344 972078.4995 0.073866872 0.109598221 5.15E-06 5.288235854 0.310083224 AIPELDAYEAEGLALDDEDVEELTAS(ph)QR ddPTM_HeLa_A486_30min_R1 4 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9J013;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AIPELDAYEAEGLALDDEDVEELT(0.006)AS(0.994)QR;AIPELDAYEAEGLALDDEDVEELT(0.002)AS(0.998)QR;AIPELDAYEAEGLALDDEDVEELTAS(1)QR;AIPELDAYEAEGLALDDEDVEELT(0.002)AS(0.998)QR ;;; 194.34 3.74E-21 214105000 89245 119420 118132 50471 142831 102585 116748 124517 103691 118062 TRUE FALSE FALSE 82989.38636 109956.7243 163875.8741 117499.0387 124915.8041 89929.10571 87536.41557 96167.19729 112679.0194 88498.50675 0.937749002 1.242469826 1.851736036 1.327695155 1.411501829 1.016165233 0.98912873 1.086653333 1.273230742 1 16.43336549 -6.259142829 24.81591289 1.073207256 1.374186484 0.283194175 0.222554917 253.7416631 2741875.488 0.079354688 0.075743706 5.51E-07 6.259142829 0.300979227 AIPGDQHPES(ph)PVHTEPMGIQGR ddPTM_HeLa_A485_30min_R1 10 AIPGDQHPESPVHTEPMGIQGR 22 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.998)PVHT(0.002)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.971)PVHT(0.029)EPMGIQGR;AIPGDQHPES(0.999)PVHT(0.001)EPMGIQGR;AIPGDQHPES(0.998)PVHT(0.002)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.995)PVHT(0.005)EPMGIQGR ;;;;;;;;; 240.12 7.78E-47 11437290000 1947018 2910483 3029470 2173973 3572767 2532112 3039756 3526466 2898600 3213522 TRUE FALSE FALSE 2380125.437 3250838.669 4150197.02 2292731.64 3217049.773 2664689.469 2390287.298 2661594.684 3480322.432 2412450.106 0.986600896 1.347525763 1.720324499 0.950374739 1.333519713 1.104557339 0.990813154 1.1032745 1.442650534 1 21.20206767 -5.305372507 24.99998907 1.137822331 1.351089618 0.17398996 0.218737405 801.0718078 455845.2628 0.061738587 0.091573706 4.95E-06 5.305372507 0.213267287 AIPGDQHPES(ph)PVHTEPMGIQGR ddPTM_HeLa_A486_30min_R1 8 AIPGDQHPESPVHTEPMGIQGR 22 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.996)PVHT(0.004)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR ;;;;;;; 227.24 2.35E-36 9494470000 2118433 2261260 2132475 887659 2567030 2136271 2496830 2471310 2019559 2576189 TRUE FALSE FALSE 1969941.786 2082069.522 2958226.43 2066515.012 2245049.161 1872719.604 1872096.725 1908646.661 2194616 1931094.506 1.020116716 1.07818106 1.53189107 1.070126296 1.162578607 0.96977108 0.969448527 0.988375585 1.136462246 1 20.88098734 -6.044091554 2.363306171 1.010243294 1.194429807 0.237746855 0.139542594 0.438679773 4.877192841 0.051647859 0.05481075 9.03E-07 6.044091554 0.184186512 AIPNGFGT(ph)SPLTPSAR ddPTM_HeLa_A485_30min_R1 1 AIPNGFGTSPLTPSAR 16 0 J3QSD2;J3QRZ1;A6NIZ0;Q9GZM8-3;Q9GZM8;Q9GZM8-2 J3QSD2 NDEL1 Nuclear distribution protein nudE-like 1 1 0 AIPNGFGT(0.761)S(0.239)PLTPSAR 94.532 0.0010054 0 35224 44861 53463 44359 61643 43450 56034 72582 39750 55292 TRUE FALSE FALSE 43059.45728 50107.10371 73241.18848 46782.21985 55505.60648 45724.97481 44061.87814 54781.1507 47727.46039 41508.72197 1.037359264 1.207146386 1.764477079 1.127045537 1.337203456 1.101575106 1.061508908 1.319750358 1.149817632 1 15.34112689 -6.259239076 24.67930273 1.142450952 1.306575791 0.151311271 0.196267822 355.2249816 3984335.065 0.067920954 0.064823775 5.51E-07 6.259239076 0.164124839 AIPPERHS(ph)PHHLK ddPTM_HeLa_A485_30min_R1 6 AIPPERHSPHHLK 13 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK ;;;;; 117.18 9.94E-05 3025020000 1560151 1756890 1521131 1557660 2166860 1823770 2073400 2120650 1656180 2126390 TRUE FALSE FALSE 1907201.207 1962343.003 2083860.656 1642751.022 1951119.81 1919259.777 1630401.152 1600557.262 1988560.135 1596320.106 1.194748597 1.229291666 1.305415279 1.029086218 1.222261 1.202302577 1.021349757 1.002654327 1.245715146 1 20.60631855 -5.325613067 0.176445545 0.978891543 1.388609353 0.284592176 0.094459844 15.12795656 0.744121483 0.357203384 1.499451646 4.72E-06 5.325613067 0.40971781 AIPPERHS(ph)PHHLK ddPTM_HeLa_A486_30min_R1 6 AIPPERHSPHHLK 13 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK ;;;;; 124.68 1.93E-05 2787809000 2011630 1987410 1430662 738364 2159630 1894620 2094890 2108430 1502207 2146070 TRUE FALSE FALSE 1870625.125 1829920.394 1984652.641 1718948.707 1888749.068 1660881.047 1570726.365 1628386.516 1632419.512 1608680.103 1.162832263 1.137529077 1.233714917 1.068546011 1.174098606 1.032449549 0.976406907 1.01225005 1.014757072 1 20.61744603 -6.353639631 4.138397416 1.002199128 1.154034459 0.780323449 0.03949537 0.106851643 3.287299202 0.014016887 0.012311591 4.43E-07 6.353639631 0.151835331 AIPTESITDS(ph)PISAQDLLSR ddPTM_HeLa_A485_30min_R1 1 AIPTESITDSPISAQDLLSR 20 0 Q9UDV7-2;Q9UDV7 Q9UDV7-2 ZNF282 Zinc finger protein 282 1 0 AIPTESIT(0.006)DS(0.994)PISAQDLLSR 166.3 2.75E-16 0 11735 18155 17295 16331 26513 16570 23356 24075 15180 23381 TRUE FALSE FALSE 14345.41026 20278.06932 23693.1402 17223.12118 23873.27263 17437.57958 18365.7998 18170.5685 18226.48676 17552.547 0.817283684 1.155277882 1.349840579 0.981232022 1.360103046 0.993450101 1.046332467 1.035209791 1.038395554 1 14.09939277 AIPTVNHSGT(ph)FSPQAPVPTTVPVVDVR ddPTM_HeLa_A485_30min_R1 1 AIPTVNHSGTFSPQAPVPTTVPVVDVR 27 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 AIPTVNHS(0.033)GT(0.751)FS(0.216)PQAPVPTTVPVVDVR 226.64 2.40E-38 851410000 134720 137810 176400 145810 211490 159660 171950 153430 138600 215070 TRUE FALSE FALSE 164687.9992 153925.6807 241657.7006 153775.2311 190433.313 168019.5507 135211.4778 115801.0519 166415.7487 161457.0071 1.020011471 0.953353983 1.496730956 0.952422158 1.179467627 1.040645766 0.837445709 0.71722531 1.030712458 1 17.30079053 -6.61200593 4.187639418 0.873937826 1.122006192 0.281981308 0.166818422 0.266602689 8.721960797 0.06555631 0.049989827 2.44E-07 6.61200593 0.248068366 AIPTVNHSGT(ph)FSPQAPVPTTVPVVDVR ddPTM_HeLa_A486_30min_R1 1 AIPTVNHSGTFSPQAPVPTTVPVVDVR 27 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 AIPTVNHS(0.022)GT(0.848)FS(0.13)PQAPVPTTVPVVDVR 275.8 7.76E-77 876470000 175290 183400 179860 74730 205160 184110 175260 173320 166860 165970 TRUE FALSE FALSE 163003.0762 168866.7161 249506.6088 173975.2166 179426.9198 161396.3801 131408.0943 133858.8195 181323.5591 124410.0317 1.310208461 1.357340029 2.005518409 1.398401835 1.442222281 1.297293939 1.056249986 1.075948762 1.457467349 1 16.9247433 -6.263675779 1.906319443 1.155201469 1.536310061 0.381782446 0.213804592 0.37810058 2.703284501 0.089909145 0.082225203 5.45E-07 6.263675779 0.381108591 AIPTVNHSGTFS(ph)PQAPVPTTVPVVDVR ddPTM_HeLa_A485_30min_R1 1 AIPTVNHSGTFSPQAPVPTTVPVVDVR 27 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 AIPTVNHS(0.069)GT(0.263)FS(0.668)PQAPVPTTVPVVDVR 213.52 2.68E-29 765400000 133300 164750 214780 145780 256450 155740 185420 206770 170640 196210 TRUE FALSE FALSE 162952.1251 184016.0794 294236.0597 153743.5923 230916.9375 163894.3056 145803.5023 156059.3333 204885.8828 147298.458 1.106271765 1.249273631 1.99755017 1.043755613 1.567680617 1.112668169 0.989850839 1.059477034 1.390957418 1 17.1683828 -6.289163316 21.55176422 1.106761417 1.399120729 0.214399432 0.270024711 212.3480784 165071.0551 0.09450898 0.083392043 5.14E-07 6.289163316 0.292359312 AIPTVNHSGTFS(ph)PQAPVPTTVPVVDVR ddPTM_HeLa_A486_30min_R1 3 AIPTVNHSGTFSPQAPVPTTVPVVDVR 27 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 AIPTVNHS(0.002)GT(0.413)FS(0.585)PQAPVPTTVPVVDVR;AIPTVNHS(0.069)GT(0.263)FS(0.668)PQAPVPTTVPVVDVR;AIPTVNHS(0.067)GT(0.322)FS(0.61)PQAPVPTTVPVVDVR ;; 250.72 9.22E-51 2276080000 430943 464550 487110 136756 566700 424105 483770 505200 455854 433411 TRUE FALSE FALSE 400736.1211 427737.3661 675732.0373 318374.8793 495619.2017 371783.2371 362725.6292 390176.9884 495367.7918 324882.0646 1.233481822 1.316592736 2.079930261 0.979970623 1.525535743 1.144363686 1.116484007 1.200980389 1.524761893 1 18.30955657 AIPVS(ph)PSAVEEDEDEDGHTVVATAR ddPTM_HeLa_A485_30min_R1 3 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AIPVS(0.83)PS(0.17)AVEEDEDEDGHTVVATAR;AIPVS(0.851)PS(0.149)AVEEDEDEDGHTVVATAR;AIPVS(0.832)PS(0.168)AVEEDEDEDGHTVVATAR ;; 293.73 1.40E-89 5274300000 437897 572020 603826 384512 659686 450527 513252 688802 485252 543798 TRUE FALSE FALSE 535305.6769 638912.7631 827206.3647 405516.9169 594005.3455 474115.8971 403591.5173 519872.2295 582637.6254 408239.1665 1.31125507 1.565045237 2.026278791 0.993331729 1.45504252 1.161367982 0.988615377 1.273450154 1.427196784 1 18.63905508 -5.278357979 24.97703684 1.198978739 1.627278307 0.450559344 0.226648158 742.2522825 1095789.935 0.064080027 0.095320561 5.27E-06 5.278357979 0.428299567 AIPVS(ph)PSAVEEDEDEDGHTVVATAR ddPTM_HeLa_A486_30min_R1 3 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AIPVS(0.82)PS(0.18)AVEEDEDEDGHTVVATAR;AIPVS(0.738)PS(0.262)AVEEDEDEDGHTVVATAR;AIPVS(0.84)PS(0.16)AVEEDEDEDGHTVVATAR ;; 255.56 1.43E-61 4621200000 365396 443565 411163 130015 557156 389476 400303 409831 335193 373181 TRUE FALSE FALSE 339783.6273 408415.294 570376.3249 302681.4906 487272.2992 341426.411 300142.9554 316521.4278 364247.7991 279734.0486 1.214666677 1.460012809 2.038994995 1.082033067 1.741912726 1.22053934 1.072958251 1.131508407 1.302121787 1 18.09369634 -6.441584374 6.832168606 1.13864036 1.509964143 0.337081125 0.25631638 0.303604859 21.66837854 0.089132833 0.078133158 3.62E-07 6.441584374 0.371323783 AIPVSPS(ph)AVEEDEDEDGHTVVATAR ddPTM_HeLa_A485_30min_R1 1 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AIPVS(0.421)PS(0.579)AVEEDEDEDGHTVVATAR 263.59 6.87E-62 1191100000 50256 71497 75316 45319 74576 53075 65600 80035 66466 64234 TRUE FALSE FALSE 61435.27382 79857.95221 103178.5226 47794.66222 67150.95159 55853.92493 51584.0241 60406.29076 79805.11654 48221.64594 1.274018599 1.656060274 2.139672352 0.991145393 1.392547896 1.158274958 1.069727569 1.252679986 1.654964591 1 15.55739327 -5.279336886 24.98153868 1.226302154 1.686531468 0.393037192 0.269104409 819.4777677 1143834.306 0.075979971 0.112967815 5.26E-06 5.279336886 0.460229314 AIPVSPS(ph)AVEEDEDEDGHTVVATAR ddPTM_HeLa_A486_30min_R1 1 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AIPVS(0.163)PS(0.837)AVEEDEDEDGHTVVATAR 272.18 3.20E-75 1421800000 51632 57437 61932 19548 75032 46188 60445 67972 48187 56709 TRUE FALSE FALSE 48012.86343 52885.48294 85913.729 45508.7319 65620.78691 40489.79417 45321.02168 52496.25942 52363.88796 42508.69729 1.129483294 1.244109707 2.021085907 1.070574607 1.543702609 0.952506116 1.0661588 1.234953381 1.231839395 1 15.37547043 -6.258801239 24.9925627 1.109842829 1.409035476 0.253060678 0.261134277 359.3038802 3403894.16 0.088604906 0.084769717 5.51E-07 6.258801239 0.299192647 AIQEGANSIVSSLHQAAAAACLS(ph)R ddPTM_HeLa_A485_30min_R1 1 AIQEGANSIVSSLHQAAAAACLSR 24 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 AIQEGANSIVSSLHQAAAAACLS(1)R 265.25 9.19E-62 364940000 66276 102290 122420 36902 143890 87445 105330 97916 89559 79603 TRUE FALSE FALSE 81018.86755 114251.9257 167708.2523 38917.86282 129563.8064 92023.48498 82825.38503 73901.94747 107532.6698 59759.43708 1.355750179 1.911864155 2.806389426 0.651242125 2.168089472 1.539898792 1.385980007 1.236657356 1.799425749 1 15.86687894 -7.782603749 0.237943032 0.877180118 1.974336929 0.132375482 0.544270646 4.929660022 1.123397862 2.107190604 1.569585428 1.65E-08 7.782603749 1.097156812 AIQEGANSIVSSLHQAAAAACLS(ph)R ddPTM_HeLa_A486_30min_R1 2 AIQEGANSIVSSLHQAAAAACLSR 24 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 AIQEGANSIVSSLHQAAAAACLS(1)R;AIQEGANSIVSSLHQAAAAACLS(1)R ; 270.74 3.53E-63 490940000 186325 245751 265043 36101.4 326709 179063 242172 227557 220910 124236 TRUE FALSE FALSE 173264.5797 226276.7958 367674.7477 84045.88366 285730.1108 156972.0276 181578.0042 175747.2386 240058.6567 93126.49696 1.860529337 2.429778883 3.948121745 0.902491626 3.06819348 1.685578571 1.949799575 1.887188334 2.577769641 1 16.50690409 -6.033039346 0.936612967 1.871447261 2.536991751 0.096390607 0.829863453 1.481933936 2.826526882 0.439491706 0.512766453 9.27E-07 6.033039346 0.665544489 AIRIS(ph)PR ddPTM_HeLa_A485_30min_R1 1 AIRISPR 7 1 Q92628 Q92628 KIAA0232 Uncharacterized protein KIAA0232 1 0 AIRIS(1)PR 41.448 0.036848 66591000 17027 26024 29626 16592 32515 26492 29936 38274 25472 28143 TRUE FALSE FALSE 20814.59741 29067.28042 40585.89024 17498.37895 29277.69243 27879.08016 23539.92905 28887.24149 30583.99676 21127.46803 0.985191286 1.375805202 1.921001143 0.828228869 1.38576437 1.319565606 1.114185997 1.367283644 1.447594038 1 14.36683226 -5.280481683 24.99746772 1.232277855 1.422179979 0.111273157 0.277281734 2057.143617 2700476.66 0.078076585 0.116013461 5.24E-06 5.280481683 0.189902124 AIS(ph)APTS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 AISAPTSPTR 10 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 2 0 AIS(0.999)APT(0.014)S(0.987)PTR 86.288 0.0079781 630200000 650590 859390 915750 665340 991740 838520 1023500 1007200 786050 940430 TRUE FALSE FALSE 795311.501 959888.1848 1254524.033 701685.8395 892998.8834 882423.6106 804820.8638 760182.6208 943803.0249 705998.1083 1.126506561 1.359618636 1.776950983 0.993891954 1.264874329 1.249895149 1.139975949 1.076748807 1.336835062 1 19.42930479 -5.296532587 24.99995845 1.163256603 1.414885254 0.315157099 0.181282384 742.9784425 529286.8911 0.050811502 0.075368947 5.05E-06 5.296532587 0.251628652 AIS(ph)PTSSSR ddPTM_HeLa_A485_30min_R1 3 AISPTSSSR 9 0 A0A0U1RRL2;B1AM27;O14795;O14795-2 A0A0U1RRL2 UNC13B Protein unc-13 homolog B 1 0 AIS(0.966)PT(0.025)S(0.009)SSR;AIS(0.986)PT(0.013)SSSR;AIS(0.985)PT(0.014)S(0.001)SSR ;; 183.13 3.09E-08 1122360000 824820 1286530 1306770 1119850 1416960 1216090 1312100 1508520 1184610 1300100 TRUE FALSE FALSE 1008298.363 1436978.492 1790198.602 1181024.57 1275882.487 1279762.592 1031759.116 1138553.105 1422350.361 976008.9966 1.033083063 1.472300458 1.834202972 1.210055004 1.307244597 1.311220077 1.057120498 1.166539559 1.457312756 1 19.89653492 AIS(ph)PTSSSR ddPTM_HeLa_A486_30min_R1 6 AISPTSSSR 9 0 A0A0U1RRL2;B1AM27;O14795;O14795-2 A0A0U1RRL2 UNC13B Protein unc-13 homolog B 1 0 AIS(0.975)PT(0.022)S(0.003)SSR;AIS(0.923)PT(0.076)S(0.001)SSR;AIS(0.986)PT(0.014)SSSR;AIS(0.916)PT(0.084)S(0.001)SSR;AIS(0.874)PT(0.091)S(0.035)SSR;AIS(0.866)PT(0.098)S(0.035)S(0.001)SR ;;;;; 180.09 3.75E-08 2274180000 2095470 2512130 2263160 825116 2955170 2071120 2285140 2467580 2111400 2234770 TRUE FALSE FALSE 1948588.374 2313059.67 3139516.162 1920911.747 2584505.023 1815606.272 1713373.802 1905765.901 2294417.852 1675169.046 1.163218947 1.380791792 1.874148862 1.146697255 1.542832366 1.083834659 1.022806508 1.137655871 1.369663472 1 20.67587526 -6.269944224 24.78627583 1.12514648 1.429150311 0.330386502 0.21250222 689.8037791 2010338.495 0.074524756 0.066770455 5.37E-07 6.269944224 0.30400383 AIS(ph)SANLLVR ddPTM_HeLa_A485_30min_R1 5 AISSANLLVR 10 0 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 AIS(0.917)S(0.083)ANLLVR;AIS(0.5)S(0.5)ANLLVR;AIS(0.664)S(0.336)ANLLVR;AIS(0.989)S(0.011)ANLLVR;AIS(0.932)S(0.068)ANLLVR ;;;; 201.66 8.64E-14 3750390000 3461010 3283930 3799540 4105040 4090780 2700910 3491530 2488280 2645590 3817020 TRUE FALSE FALSE 4230899.734 3667957.047 5205147.958 4329287.941 3683487.58 2842325.471 2745536.092 1878025.429 3176535.646 2865507.161 1.476492466 1.280037648 1.816484017 1.510827821 1.285457468 0.991910092 0.958132693 0.655390241 1.108542212 1 21.45035907 -6.130790645 2.078172093 0.906567639 1.525130242 0.738921161 0.162617838 0.163521121 1.392632756 0.062502588 0.062750908 7.40E-07 6.130790645 0.618562602 AIS(ph)SANLLVR ddPTM_HeLa_A486_30min_R1 7 AISSANLLVR 10 0 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 AIS(0.94)S(0.06)ANLLVR;AIS(0.694)S(0.306)ANLLVR;AIS(0.707)S(0.293)ANLLVR;AIS(0.5)S(0.5)ANLLVR;AIS(0.5)S(0.5)ANLLVR;AIS(0.5)S(0.5)ANLLVR;AIS(0.5)S(0.5)ANLLVR ;;;;;; 216.04 7.90E-17 4300718000 3397819 4294720 3402776 1233562 3899980 3778861 3729317 3885660 3606565 2928482 TRUE FALSE FALSE 3159649.434 3954390.746 4720421.997 2871794.677 3410808.143 3312663.55 2796202.442 3000980.041 3919184.958 2195171.046 1.439363662 1.801404384 2.150366371 1.30823276 1.553777847 1.509068533 1.273797068 1.367082555 1.78536655 1 21.06590193 -5.287681905 24.9894763 1.420654234 1.797480875 0.344449828 0.250074233 834.9116649 795043.7796 0.069127791 0.102568261 5.16E-06 5.287681905 0.376826641 AIS(ph)SASIEGLMGR ddPTM_HeLa_A485_30min_R1 1 AISSASIEGLMGR 13 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AIS(0.968)S(0.024)AS(0.007)IEGLMGR 64.65 0.01276 0 26402 29522 37120 18136 39970 36669 31642 33615 31939 19264 TRUE FALSE FALSE 32275.03381 32974.34109 50852.23269 19126.72376 35990.44646 38588.93214 24881.42821 25370.86854 38348.86434 14461.83933 2.231737823 2.280093171 3.516304637 1.322565085 2.488649309 2.668328092 1.720488497 1.754332071 2.651728004 1 13.81996343 -10.435363 0.240782079 8.59E-14 2.515900938 0.309634884 0.579944545 27.10319146 1.248306748 18.4905254 1.037196348 3.67E-11 10.435363 2.515900938 AIS(ph)SDMFFGR ddPTM_HeLa_A485_30min_R1 11 AISSDMFFGR 10 0 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 AIS(0.973)S(0.027)DMFFGR;AIS(0.976)S(0.024)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.773)S(0.227)DMFFGR;AIS(0.983)S(0.017)DMFFGR;AIS(0.722)S(0.278)DMFFGR;AIS(0.982)S(0.018)DMFFGR;AIS(0.896)S(0.104)DMFFGR;AIS(0.984)S(0.016)DMFFGR ;;;;;;;;;; 240.37 6.72E-21 2595839000 1151150 1395238 1518131 1252429 1881775 1269990 1708516 1870962 1465217 1668340 TRUE FALSE FALSE 1407219.346 1558398.947 2079750.832 1320846.025 1694418.874 1336484.713 1343477.599 1412105.636 1759272.612 1252453.542 1.123570096 1.24427685 1.6605413 1.054606803 1.352879622 1.067093244 1.072676594 1.12747147 1.404660974 1 20.25632566 -5.846272414 1.714176832 1.147192558 1.313234747 0.118669742 0.184030033 0.774663923 4.698117713 0.067498766 0.084034356 1.42E-06 5.846272414 0.166042189 AIS(ph)SDMFFGR ddPTM_HeLa_A486_30min_R1 11 AISSDMFFGR 10 0 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 AIS(0.977)S(0.023)DMFFGR;AIS(0.974)S(0.026)DMFFGR;AIS(0.993)S(0.007)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.86)S(0.14)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.972)S(0.028)DMFFGR;AIS(0.981)S(0.019)DMFFGR;AIS(0.997)S(0.003)DMFFGR;AIS(0.966)S(0.034)DMFFGR ;;;;;;;;;; 249.83 1.46E-21 2259604000 1236865 1197846 937168 436241.8 1269977 1448680 1554062 1845686 1172140 1470375 TRUE FALSE FALSE 1150167.151 1102924.32 1300064.548 1015592.957 1110684.643 1269956.591 1165219.25 1425463.589 1273742.039 1102183.529 1.043535056 1.000672112 1.179535452 0.921437247 1.007712974 1.152218806 1.057191674 1.293308737 1.155653305 1 20.07193304 -6.26672036 23.99092998 1.145351133 1.031129073 0.221261994 0.093075451 357.8215572 1625536.813 0.032058083 0.029125699 5.41E-07 6.26672036 -0.11422206 AIS(ph)SPTVSR ddPTM_HeLa_A486_30min_R1 1 AISSPTVSR 9 0 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 AIS(0.5)S(0.5)PTVSR 130.53 0.00024043 319100000 466960 545270 348210 175970 525410 518000 599590 555450 458210 564740 TRUE FALSE FALSE 434228.5154 502060.8194 483046.2374 409667.053 459508.1785 454094.4266 449566.2402 428986.1604 497928.0117 423325.4282 1.025755805 1.185992586 1.141075412 0.967735519 1.08547266 1.072684031 1.061987328 1.013372058 1.176229866 1 18.69140762 AIS(ph)TGSLASSTLNK ddPTM_HeLa_A485_30min_R1 2 AISTGSLASSTLNK 14 0 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 AIS(0.93)T(0.062)GS(0.006)LAS(0.001)S(0.002)TLNK;AIS(0.947)T(0.045)GS(0.007)LAS(0.001)STLNK ; 97.073 0.00090497 304870000 307340 498790 488720 196165 487610 505170 401790 510560 461390 300720 TRUE FALSE FALSE 375706.7227 557119.1516 669517.8653 206880.9972 439061.8363 531619.9201 315944.2842 385344.3595 553986.7409 225756.0383 1.664215608 2.467792914 2.965669801 0.916391866 1.944850909 2.354842528 1.399494279 1.706906102 2.453917711 1 17.78440505 -11.07615232 0.25082242 1.80E-29 2.108636235 0.195110542 0.573972819 58.01768929 2.107944665 36.68991148 0.91781008 8.39E-12 11.07615232 2.108636235 AIS(ph)TGSLASSTLNK ddPTM_HeLa_A486_30min_R1 1 AISTGSLASSTLNK 14 0 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 AIS(0.891)T(0.107)GS(0.002)LASSTLNK 74.643 0.0079235 143730000 97337 130540 88789 34213 109930 94804 97163 94040 78884 97320 TRUE FALSE FALSE 90514.17895 120195.535 123170.4787 79649.59303 96141.55434 83108.04638 72851.78971 72629.14488 85721.72863 72950.43855 1.240762643 1.647632795 1.688413135 1.091831586 1.317902349 1.139239846 0.998647728 0.995595727 1.175068037 1 16.15462903 -5.272725092 24.82681745 1.108593374 1.537805849 0.642060808 0.144595137 402.7650723 886019.9231 0.04199253 0.062941869 5.34E-06 5.272725092 0.429212475 AIS(ph)TPEK ddPTM_HeLa_A485_30min_R1 1 AISTPEK 7 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 AIS(0.5)T(0.5)PEK 121.35 0.0019444 425730000 1021300 976050 770150 1377400 1234700 957340 1455700 1417600 931620 1765200 TRUE FALSE FALSE 1248484.662 1090190.557 1055060.534 1452643.874 1111768.933 1007464.842 1144677.803 1069931.377 1118587.589 1325168.126 0.94213303 0.822680938 0.796171077 1.096195906 0.838964438 0.760254357 0.863798171 0.807392931 0.844109941 1 20.33774398 AIS(ph)TPEK ddPTM_HeLa_A486_30min_R1 1 AISTPEK 7 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 AIS(0.744)T(0.256)PEK 140.84 0.0003662 0 992630 944510 504780 432860 876880 1011600 1250700 1167500 711620 1217100 TRUE FALSE FALSE 923051.7629 869663.5878 700244.3345 1007719.956 766893.5338 886799.0772 937761.6314 901685.7363 773303.7946 912330.238 1.011751803 0.953233327 0.767533844 1.104556128 0.840587653 0.972015439 1.027875206 0.988332622 0.847613904 1 19.79919661 AIS(ph)TPET(ph)PLTKR ddPTM_HeLa_A485_30min_R1 1 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 AIS(0.706)T(0.294)PET(0.998)PLT(0.001)KR 113.25 0.027179 162130000 337550 377940 293640 305150 476690 391330 548330 617100 318970 420090 TRUE FALSE FALSE 412636.833 422136.7954 402269.6554 321819.5718 429229.0698 411819.4337 431174.8161 465755.2574 382984.3532 315369.2942 1.308424252 1.338547548 1.275551117 1.020453093 1.36103634 1.305832373 1.367206079 1.476856707 1.214399627 1 18.26668267 -8.015711305 24.17813138 0.999999986 1.303800174 0.420114509 0.109344099 629.2477156 968350.3958 0.111704624 0.02884201 9.64E-09 8.015711305 0.303800187 AIS(ph)TPET(ph)PLTKR ddPTM_HeLa_A486_30min_R1 1 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 AIS(0.498)T(0.502)PET(0.987)PLT(0.013)KR 82.102 0.0037952 557240000 558880 599530 400690 231120 646560 581110 697270 722620 384040 675370 TRUE FALSE FALSE 519705.3981 552021.0593 555847.8989 538059.0402 565462.4159 509418.5565 522805.671 558095.2007 417328.8964 506252.9561 1.02657257 1.090405602 1.097964747 1.062826466 1.116956275 1.006253001 1.03269653 1.102403836 0.824348562 1 18.9494989 -7.749158641 24.99172633 0.912174256 1.067178001 0.585089222 0.05215496 124.9865674 254355.3247 0.033778181 0.012564284 1.78E-08 7.749158641 0.155003746 AIS(ph)TPETPLTKR ddPTM_HeLa_A485_30min_R1 1 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 AIS(0.5)T(0.5)PET(0.001)PLTKR 87.083 0.0014684 288580000 168420 423280 302910 167920 401840 428810 468690 755460 302090 228980 TRUE FALSE FALSE 205884.448 472778.914 414969.0141 177093.0444 361831.3987 451261.8285 368550.5527 570182.2505 362716.6921 171899.5001 1.197702424 2.750321634 2.414021065 1.030212679 2.10490082 2.625149162 2.143988508 3.316951185 2.110050884 1 17.39120582 -6.005343568 24.8545245 2.376633878 1.904764439 0.043048684 0.721481423 589.8619644 2743640.926 0.22236891 0.244938893 9.88E-07 6.005343568 -0.471869439 AISAPTS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 AISAPTSPTR 10 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 AISAPT(0.014)S(0.985)PT(0.001)R;AISAPT(0.098)S(0.901)PT(0.001)R ; 108.53 0.0008198 1600000000 1959120 2949200 3086200 2103410 3120000 2633200 3070800 3217600 2585800 2922400 TRUE FALSE FALSE 2394919.485 3294083.285 4227913.807 2218313.962 2809361.845 2771070.28 2414698.494 2428478.555 3104746.342 2193899.463 1.091626816 1.501474129 1.92712286 1.011128358 1.28053354 1.263079885 1.100642274 1.106923356 1.41517257 1 21.06506598 -5.297202112 24.99969505 1.178484131 1.506215129 0.327037905 0.222195028 688.8094868 481506.0926 0.062581802 0.092826857 5.04E-06 5.297202112 0.327730998 AISAPTS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 AISAPTSPTR 10 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 AIS(0.001)APT(0.063)S(0.935)PT(0.001)R;AISAPT(0.004)S(0.994)PT(0.002)R;AISAPT(0.047)S(0.951)PT(0.002)R ;; 134.38 5.36E-05 2070220000 2023960 2455700 2294600 556760 2607600 1961690 2079840 2162950 2319700 2096680 TRUE FALSE FALSE 1882090.856 2261101.388 3183130.572 1296165.417 2280530.493 1719676.633 1559442.034 1670493.502 2520773.464 1571657.681 1.197519586 1.438672948 2.025333258 0.824712298 1.451035121 1.094180147 0.99222754 1.062886354 1.603894725 1 20.58385559 -5.276013271 24.99570585 1.15363076 1.542325094 0.296337517 0.287006688 1007.549974 1728048.499 0.079865579 0.119061301 5.30E-06 5.276013271 0.388694334 AISS(ph)ANLLVR ddPTM_HeLa_A485_30min_R1 1 AISSANLLVR 10 0 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 AIS(0.071)S(0.929)ANLLVR 205.97 5.94E-14 925870000 385650 336590 397920 470680 433520 289590 350820 272820 294810 437660 TRUE FALSE FALSE 471436.512 375951.2726 545127.1668 496392.0566 390357.2266 304752.4846 275864.4411 205910.4672 353975.6628 328559.4165 1.434859232 1.144241357 1.659143337 1.510813666 1.188087168 0.927541471 0.839618124 0.626706942 1.077356621 1 18.32579476 -6.111425937 2.53256529 0.860286829 1.430027091 0.707527496 0.163913658 0.158193778 1.985053036 0.060118628 0.061169194 7.74E-07 6.111425937 0.569740262 AISS(ph)PTVSR ddPTM_HeLa_A485_30min_R1 4 AISSPTVSR 9 0 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 AIS(0.263)S(0.737)PTVSR;AIS(0.447)S(0.552)PT(0.001)VSR;AIS(0.289)S(0.696)PT(0.015)VSR;AIS(0.292)S(0.708)PTVSR ;;; 163.86 1.12E-05 370870000 2194890 2184210 2052150 2863750 2844970 2405630 3083720 3071310 2229160 3877760 TRUE FALSE FALSE 2683135.708 2439634.359 2811325.682 3020189.411 2561714.798 2531585.067 2424858.03 2318066.407 2676531.965 2911105.797 0.921689521 0.838043867 0.965724325 1.037471539 0.879979972 0.869630046 0.83296802 0.796283807 0.919421056 1 21.47313584 -5.971749941 24.99667369 0.868542747 0.938125483 0.126195237 0.068757192 373.0739365 330107.6396 0.021784488 0.024700874 1.07E-06 5.971749941 0.069582736 AISS(ph)PTVSR ddPTM_HeLa_A486_30min_R1 1 AISSPTVSR 9 0 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 AIS(0.294)S(0.702)PT(0.004)VSR 115.82 0.00066271 280710000 521320 559570 386480 184970 575270 591680 618480 616310 496650 624670 TRUE FALSE FALSE 484778.1601 515227.6353 536135.4063 430619.5079 503114.2724 518684.5374 463729.7624 475989.667 539700.0219 468248.5661 1.035300896 1.100329339 1.144980348 0.919638711 1.074459825 1.107711961 0.990349562 1.016532033 1.152593005 1 18.83691505 AIST(ph)PEK ddPTM_HeLa_A485_30min_R1 1 AISTPEK 7 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 AIS(0.138)T(0.862)PEK 146.23 0.0057342 544050000 1062400 1069800 791440 1515700 1334100 1029000 1487200 1499100 981100 1887600 TRUE FALSE FALSE 1298727.215 1194903.804 1084226.591 1598498.853 1201272.32 1082876.849 1169447.571 1131443.375 1177997.771 1417056.059 0.916496709 0.843229734 0.765126111 1.128042072 0.847723922 0.764173613 0.825265566 0.798446446 0.831299343 1 20.4344654 -5.980849139 24.99472057 0.827397939 0.908925315 0.084390691 0.103783594 535.4477611 698835.5861 0.032012251 0.036293723 1.05E-06 5.980849139 0.081527376 AIST(ph)PET(ph)PLTK ddPTM_HeLa_A485_30min_R1 2 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 AIS(0.432)T(0.568)PET(0.997)PLT(0.003)K;AIS(0.002)T(0.998)PET(1)PLTK ; 194.06 5.11E-11 370990000 655030 538030 535010 873750 817230 594990 810800 622720 603260 1072130 TRUE FALSE FALSE 800739.1637 600947.9283 732932.4626 921480.75 735863.7117 626142.7564 637565.9564 469996.9436 724328.7486 804867.7221 0.994870513 0.746641854 0.910624743 1.144884712 0.914266645 0.777944921 0.792137564 0.583943089 0.899935143 1 19.61839217 -6.216880197 5.178254519 0.783326542 0.942427231 0.178187659 0.135592551 0.314854405 20.65570956 0.046365003 0.045561289 6.07E-07 6.216880197 0.159100689 AIST(ph)PET(ph)PLTK ddPTM_HeLa_A486_30min_R1 1 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 AIS(0.001)T(0.999)PET(1)PLTK 164.11 8.86E-08 331300000 352850 463160 361670 162120 478000 500020 478740 497720 397900 440160 TRUE FALSE FALSE 328117.0371 426457.5148 501718.3099 377423.5531 418044.7828 438332.6162 358954.1884 384400.0212 432390.2924 329941.071 0.994471637 1.292526309 1.520630058 1.143912008 1.267028629 1.328517892 1.08793424 1.165056596 1.310507634 1 18.33184885 -6.75995404 24.99991015 1.154629336 1.266607116 0.130380673 0.145227291 91.56616104 1541199.895 0.058044999 0.042511042 1.74E-07 6.75995404 0.11197778 AIST(ph)PET(ph)PLTKR ddPTM_HeLa_A485_30min_R1 1 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 AIS(0.204)T(0.796)PET(0.999)PLT(0.001)KR 110.84 0.00057797 857450000 1055300 1318900 1071400 1018300 1710000 1555300 1817500 2265800 1081600 1367700 TRUE FALSE FALSE 1290047.844 1473133.882 1467755.445 1073927.151 1539746.396 1636733.103 1429176.277 1710108.997 1298667.199 1026757.561 1.256428872 1.434743642 1.429505368 1.045940338 1.499620217 1.594079426 1.391931584 1.665543126 1.264823605 1 19.96966414 AIST(ph)PET(ph)PLTKR ddPTM_HeLa_A486_30min_R1 2 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 AIS(0.183)T(0.817)PET(0.999)PLT(0.001)KR;AIS(0.028)T(0.972)PET(0.999)PLT(0.001)KR ; 143.94 5.77E-07 818330000 1029850 1075750 715550 460380 1230040 1023880 1278790 1343010 774640 1208470 TRUE FALSE FALSE 957662.8332 990503.6522 992630.1231 1071787.906 1075756.914 897564.0956 958823.2163 1037235.941 841786.4189 905861.2462 1.057184902 1.093438599 1.095786057 1.183170061 1.187551535 0.990840594 1.058465875 1.145027393 0.9292664 1 19.78893056 -6.269080652 24.97620493 1.035893379 1.123543789 0.367538735 0.063905991 756.0975932 2471367.521 0.022950979 0.020599085 5.38E-07 6.269080652 0.087650409 AIST(ph)PETPLTK ddPTM_HeLa_A485_30min_R1 4 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 AIS(0.002)T(0.997)PETPLTK;AIS(0.036)T(0.962)PET(0.002)PLTK;AIS(0.002)T(0.981)PET(0.017)PLTK;AIS(0.021)T(0.939)PET(0.039)PLTK ;;; 185.18 6.97E-10 1152690000 2362880 2384380 2197900 3075530 3284370 2503910 2984070 2757750 2665250 3996240 TRUE FALSE FALSE 2888494.504 2663212.5 3010994.672 3243538.416 2957366.591 2635010.856 2346499.067 2081407.489 3200141.228 3000050.913 0.962815161 0.887722434 1.003647858 1.081161124 0.985772134 0.878322046 0.782153082 0.693790722 1.06669564 1 21.51655555 -6.302169819 4.858822625 0.857091698 0.985626222 0.156745636 0.107867171 0.311744915 17.96558943 0.038680252 0.034714107 4.99E-07 6.302169819 0.128534524 AIST(ph)PETPLTK ddPTM_HeLa_A486_30min_R1 4 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 AIS(0.157)T(0.843)PETPLTK;AIS(0.012)T(0.988)PETPLTK;AIS(0.014)T(0.985)PET(0.001)PLTK;AIS(0.001)T(0.966)PET(0.032)PLTK ;;; 202.05 5.14E-14 1170885000 2130920 2452060 1624240 730210 2507060 2401000 2510400 2614330 1926030 2554840 TRUE FALSE FALSE 1981553.512 2257749.835 2253189.227 1699965.783 2192601.157 2104789.032 1882271.368 2019104.129 2092979.831 1915091.435 1.034704389 1.178925348 1.176543942 0.887668208 1.144906774 1.099054068 0.982862402 1.05431213 1.092887678 1 20.86898184 AIST(ph)PETPLTKR ddPTM_HeLa_A485_30min_R1 1 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 AIS(0.171)T(0.829)PETPLTKR 81.632 0.0045208 355000000 258930 527970 365150 192820 546210 606900 606410 938850 365690 310980 TRUE FALSE FALSE 316528.0852 589711.4988 500234.1802 203353.2684 491827.4145 638676.3456 476845.5496 708595.5654 439080.6287 233458.4092 1.355822163 2.52598097 2.142712194 0.871047092 2.106702501 2.735717886 2.042528908 3.035211145 1.880765959 1 17.83280603 -5.988295709 24.99848425 2.27793525 1.77082068 0.06452785 0.657243977 499.2954679 1066407.94 0.19825488 0.22463243 1.03E-06 5.988295709 -0.50711457 AIT(ph)PPLPESTVPFSNGVLK ddPTM_HeLa_A485_30min_R1 1 AITPPLPESTVPFSNGVLK 19 0 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 AIT(1)PPLPESTVPFSNGVLK 74.772 0.020134 120600000 34178 39912 32818 33333 39733 41746 60927 76298 32885 58896 TRUE FALSE FALSE 41780.77819 44579.36121 44958.74387 35153.89739 35777.04301 43931.75601 47909.44872 57585.79587 39484.71786 44214.3111 0.944960515 1.008256379 1.016836919 0.795079614 0.809173368 0.99360942 1.083573339 1.302424361 0.893030263 1 15.43222579 -6.610542387 3.879720992 1.094184556 0.917651544 0.266417863 0.117864889 0.282950041 8.199872676 0.048248183 0.036703642 2.45E-07 6.610542387 -0.176533012 AIT(ph)PPLPESTVPFSNGVLK ddPTM_HeLa_A486_30min_R1 1 AITPPLPESTVPFSNGVLK 19 0 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 AIT(1)PPLPESTVPFSNGVLK 141.55 1.37E-07 72887000 36037 42241 31169 16321 41019 39472 40696 35183 50741 45120 TRUE FALSE FALSE 33510.9924 38893.66932 43238.47153 37996.11282 35874.01453 34602.34596 30513.43036 27172.59894 55139.27073 33821.65832 0.990814586 1.149963404 1.278425532 1.123425483 1.060681715 1.023082477 0.90218611 0.803408239 1.630294713 1 15.04565978 -5.725208985 4.196397567 1.04864832 1.149117549 0.015861119 0.2156243 0.816083964 31.20132135 0.065727309 0.082952772 1.88E-06 5.725208985 0.100469229 AIT(ph)PPQQPYK ddPTM_HeLa_A485_30min_R1 4 AITPPQQPYK 10 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 AIT(1)PPQQPYK;AIT(1)PPQQPYK;AIT(1)PPQQPYK;AIT(1)PPQQPYK ;;; 125.97 0.00053059 1463320000 1930190 2122390 1835360 2195260 2772460 2325180 2785260 3039400 2044050 3022830 TRUE FALSE FALSE 2359554.106 2370585.048 2514336.04 2315181.495 2496424.148 2446922.829 2190166.448 2293982.384 2454272.086 2269294.112 1.03977448 1.044635438 1.107981564 1.020220994 1.100088408 1.078274877 0.965131155 1.010879274 1.081513442 1 21.11381217 -6.727986002 24.99997811 1.015287477 1.065720638 0.314680968 0.036697996 233.2609737 174317.4749 0.013980358 0.010828367 1.87E-07 6.727986002 0.050433161 AIT(ph)PPQQPYK ddPTM_HeLa_A486_30min_R1 3 AITPPQQPYK 10 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 AIT(1)PPQQPYK;AIT(1)PPQQPYK;AIT(1)PPQQPYK ;; 138.45 0.00012801 1747730000 1210510 1259110 871390 509810 1315110 1186970 1405270 1419440 1033590 1343640 TRUE FALSE FALSE 1125659.5 1159333.538 1208815.545 1186863.444 1150156.641 1040533.71 1053656.583 1096264.498 1123182.413 1007183.798 1.117630667 1.151064523 1.200193596 1.17839807 1.14195308 1.033112041 1.046141314 1.088445326 1.115171248 1 19.94189555 -6.136218863 4.824575908 1.061800793 1.163323078 0.675336817 0.035162207 0.14831051 5.202426815 0.01225604 0.012303063 7.31E-07 6.136218863 0.101522285 AIT(ph)S(ph)T(ph)LADVK ddPTM_HeLa_A485_30min_R1 1 AITSTLADVK 10 0 Q8IZF6-2;Q8IZF6-3;Q8IZF6 Q8IZF6-2 GPR112 Probable G-protein coupled receptor 112 3 0 AIT(1)S(1)T(1)LADVK 66.595 0.015729 122500000 67925 220460 306330 30529 237090 144400 107050 133670 204350 48261 TRUE FALSE FALSE 83034.68191 246240.8793 419654.2145 32196.72197 213484.4871 151960.5607 84177.89298 100887.2229 245361.1706 36230.42088 2.291849774 6.796522737 11.58292408 0.888665414 5.892409802 4.194280857 2.323403674 2.784599805 6.772241797 1 15.14491394 -5.286061424 24.99915365 3.573396028 6.881043558 0.251599252 2.742012225 1093.59512 1110342.023 0.767600748 1.139116035 5.18E-06 5.286061424 3.30764753 AIT(ph)VFSPDGHLFQVEYAQEAVK ddPTM_HeLa_A486_30min_R1 1 AITVFSPDGHLFQVEYAQEAVK 22 0 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 1 0 AIT(0.547)VFS(0.453)PDGHLFQVEYAQEAVK 185.7 1.79E-19 63464000 27114 33902 27545 10741 39229 37791 31465 37073 30484 32979 TRUE FALSE FALSE 25213.44862 31215.48205 38211.16168 25005.59082 34308.53302 33128.73065 23592.1242 28632.2872 33126.37766 24720.84374 1.019926702 1.26271912 1.54570621 1.011518502 1.38783827 1.340113266 0.954341383 1.158224513 1.340018084 1 14.59344036 -6.730867117 24.99983881 1.12633097 1.268693098 0.140387982 0.177851429 430.0978019 351703.0084 0.06769004 0.052426677 1.86E-07 6.730867117 0.142362128 AITIAGIPQSIIECVK ddPTM_HeLa_A485_30min_R1 1 AITIAGIPQSIIECVK 16 0 H3BRU6;F8VZX2;F8VXH9;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-8;Q15366-4;Q15366-7;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 0 178.58 9.11E-13 8977300 6835.1 6707.7 7036.3 7765.5 9503.1 8983.7 10428 11016 7004.3 11859 FALSE FALSE TRUE 8355.544414 7492.107166 9639.320175 8189.709602 8556.937997 9454.072641 8199.972611 8314.308728 8409.998763 8902.769549 0.938533157 0.841547917 1.082732752 0.919905829 0.96115461 1.061924898 0.921058617 0.933901376 0.94464972 1 13.1200385 -4.730189873 24.99999662 0.974069011 0.890040582 0.269649689 0.057698765 270.8957857 216716.3119 0.014330466 0.037906417 1.86E-05 4.730189873 -0.084028429 AITIAGIPQSIIECVK ddPTM_HeLa_A486_30min_R1 2 AITIAGIPQSIIECVK 16 0 H3BRU6;F8VZX2;F8VXH9;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-8;Q15366-4;Q15366-7;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 0 ; ; 237.3 9.05E-33 6485700 24369 36952 24347 12450.7 37513 34409 37707 38483 31544 37004 FALSE FALSE TRUE 22660.85894 34023.78894 33774.81044 28985.85882 32807.76975 30163.96743 28272.30978 29721.26098 34278.25932 27737.95754 0.81696206 1.226614789 1.217638695 1.044988939 1.182775253 1.087461735 1.019264296 1.071501423 1.235788874 1 14.75957394 -4.248648887 24.50998423 1.121304134 0.816961805 0.536096622 0.084754113 1268.481209 2430692.627 0.021131097 0.367388914 5.64E-05 4.248648887 -0.304342329 AITS(ph)PLAAGSKPSKK ddPTM_HeLa_A486_30min_R1 1 AITSPLAAGSKPSKK 15 2 Q9UGU5;B0QXZ8;B0QXZ9 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 0 AIT(0.109)S(0.891)PLAAGSKPSKK 117.67 5.16E-05 394700000 537980 444170 194440 222930 441210 483690 555380 557690 309370 649260 TRUE FALSE FALSE 500270.3801 408972.3516 269732.3753 518992.3063 385869.3277 424017.2456 416418.0498 430716.1613 336186.4407 486681.07 1.027922414 0.840329277 0.554228204 1.066390986 0.792858715 0.871242528 0.855628204 0.885007016 0.690773612 1 18.89261713 -4.264104309 7.642177722 0.834077013 1.029758191 0.145127298 0.13656793 0.172133207 107.5406059 0.032374946 0.17900007 5.44E-05 4.264104309 0.195681177 AITSLLGGGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 AITSLLGGGSPK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AITSLLGGGS(1)PK;AITSLLGGGS(1)PK ; 258.09 2.51E-33 14657600000 2678300 2605800 1967060 4506700 3425900 2496900 4810000 4508300 2218400 5647100 TRUE FALSE FALSE 3274078.595 2910525.643 2694757.35 4752889.609 3084805.367 2627633.823 3782304.206 3402632.356 2663612.532 4239381.897 0.772300933 0.686544811 0.635648643 1.121127967 0.727654512 0.619815314 0.89218294 0.802624637 0.628302096 1 22.0154225 -11.23330612 2.323139962 1.80501385 0.76894719 0.191797165 0.144446833 6957674.6 1453995.413 29394847.3 0.036797678 5.84E-12 11.23330612 -1.03606666 AITSLLGGGS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AITSLLGGGSPK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AITSLLGGGS(1)PK;AITSLLGGGS(1)PK;AITSLLGGGS(1)PK ;; 274.44 1.20E-40 17476139000 4450251 4348068 2124318 2823948 3593873 4421577 6511187 5754815 3068225 7479684 TRUE FALSE FALSE 4138311.386 4003511.256 2946910.821 6574293.658 3143095.937 3876087.785 4882019.144 4444569.251 3334181.213 5606722.442 0.738098136 0.714055546 0.525603122 1.172573411 0.560594174 0.691328637 0.870743861 0.792721469 0.594675632 1 22.41872622 -10.65004357 2.969586925 1.023286935 0.744376535 0.163862825 0.17592029 179288992.7 176110761.4 31935649.8 0.043822502 2.24E-11 10.65004357 -0.2789104 AITVFS(ph)PDGHLFQVEYAQEAVK ddPTM_HeLa_A485_30min_R1 1 AITVFSPDGHLFQVEYAQEAVK 22 0 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 1 0 AIT(0.173)VFS(0.827)PDGHLFQVEYAQEAVK 145.52 1.36E-09 78060000 23617 29908 26758 24162 37796 30545 34541 39470 29962 39223 TRUE FALSE FALSE 28870.52017 33405.48043 36656.89769 25481.90888 34032.89753 32144.28897 27161.03318 29789.92061 35975.09857 29445.42795 0.980475482 1.134487857 1.24490966 0.865394415 1.15579565 1.091656369 0.922419373 1.01169936 1.221754992 1 14.84575602 -5.234431754 24.99949519 1.041155406 1.121410633 0.095908936 0.114519129 1939.531771 1795317.373 0.030865863 0.053439762 5.83E-06 5.234431754 0.080255226 AITVFS(ph)PDGHLFQVEYAQEAVKK ddPTM_HeLa_A485_30min_R1 2 AITVFSPDGHLFQVEYAQEAVKK 23 1 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 1 0 AIT(0.146)VFS(0.854)PDGHLFQVEYAQEAVKK;AIT(0.013)VFS(0.987)PDGHLFQVEYAQEAVKK ; 138.71 5.22E-07 402360000 188082 158205 123263 192594 242485 228974 297725 341670 160485 317333 TRUE FALSE FALSE 229920.192 176705.6985 168863.1131 203114.9225 218342.342 240962.7246 234113.6216 257874.8968 192692.8674 238227.7232 0.965127773 0.741751196 0.708830655 0.852608252 0.916527846 1.011480618 0.982730383 1.082472238 0.808859963 1 17.86198179 -5.809934577 2.504571067 0.981363749 0.798077895 0.410531789 0.090430134 0.258354678 3.315253544 0.029612532 0.036353078 1.55E-06 5.809934577 -0.183285854 AITVFS(ph)PDGHLFQVEYAQEAVKK ddPTM_HeLa_A486_30min_R1 2 AITVFSPDGHLFQVEYAQEAVKK 23 1 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 1 0 AITVFS(1)PDGHLFQVEYAQEAVKK;AIT(0.001)VFS(0.999)PDGHLFQVEYAQEAVKK ; 251.51 6.38E-50 533760000 384860 380170 183338 182365 389560 409730 499140 489860 281820 550960 TRUE FALSE FALSE 357883.3014 350043.9446 254331.3836 424554.9362 340697.7523 359181.6784 374249.8926 378329.5716 306248.3845 412996.0299 0.866553854 0.847572178 0.615820408 1.027987936 0.824941955 0.869697654 0.906182785 0.916061037 0.74152864 1 18.65576839 -5.271668578 24.99970367 0.890670135 0.783741141 0.237203929 0.098907787 1093.771614 2673126.8 0.027042108 0.040612977 5.35E-06 5.271668578 -0.106928993 AITVFSPDGHLFQVEYAQEAVK ddPTM_HeLa_A485_30min_R1 1 AITVFSPDGHLFQVEYAQEAVK 22 0 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 0 0 219.65 3.54E-35 16433000 7737 8708.3 10903 6547.5 13663 8329.3 11968 13939 9452.5 12567 FALSE FALSE TRUE 9458.068958 9726.659933 14936.47341 6905.173346 12302.66375 8765.409268 9410.93903 10520.43839 11349.53005 9434.278178 1.002521738 1.030991428 1.583213165 0.731923865 1.304038689 0.92910227 0.997526133 1.115129128 1.2030099 1 13.20369643 -5.283386734 24.99965522 1.049499474 1.188117242 0.115547106 0.206978065 2005.066576 2283914.276 0.056788668 0.084316117 5.21E-06 5.283386734 0.138617768 AITVFSPDGHLFQVEYAQEAVKK ddPTM_HeLa_A485_30min_R1 2 AITVFSPDGHLFQVEYAQEAVKK 23 1 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 0 0 ; ; 304.66 7.77E-93 89525000 89565 109398 81246 68007 142462 118967 165059 194490 105570 136861 FALSE FALSE TRUE 109488.4253 122191.1445 111302.2763 71722.05021 128277.9831 125195.9282 129792.7962 146791.0226 126756.9307 102744.0714 1.065642267 1.189276839 1.083296338 0.698065097 1.248519562 1.218522163 1.26326312 1.428705525 1.233715278 1 16.64869562 -5.938577035 24.9999631 1.2550972 1.02049932 0.329544658 0.153462396 79.23611063 32249.42432 0.048317526 0.054786919 1.15E-06 5.938577035 -0.23459788 AITVFSPDGHLFQVEYAQEAVKK ddPTM_HeLa_A486_30min_R1 2 AITVFSPDGHLFQVEYAQEAVKK 23 1 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 0 0 ; ; 249.38 2.80E-53 77661000 107561 102647 65539 7287.5 112427 95482 117552 112052 87537 78369 FALSE FALSE TRUE 100021.5293 94512.87789 90917.456 16965.66829 98325.35732 83702.40163 88139.24626 86540.20568 95124.77764 58744.8923 1.702642143 1.608869711 1.547665719 0.288802441 1.67376862 1.424845605 1.500372931 1.473152853 1.619285931 1 15.8421758 AIVEFLSNLAR ddPTM_HeLa_A485_30min_R1 1 AIVEFLSNLAR 11 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 0 0 123.79 0.0031804 5884900 8623.7 4867 6889.1 11830 9048.4 10183 17403 14148 5344.9 17874 FALSE FALSE TRUE 10542.01231 5436.153313 9437.664769 12476.24294 8147.509525 10716.16613 13684.70688 10678.18082 6417.572404 13418.34075 0.785642019 0.405128579 0.70334067 0.929790291 0.607192028 0.798620808 1.0198509 0.795789958 0.478268701 1 13.71191866 -4.996057553 24.72267058 0.79781242 0.585097583 0.180128699 0.178509115 160.4214714 1005946.008 0.04579341 0.094644564 1.01E-05 4.996057553 -0.212714837 AK(ac)LAEQAER ddPTM_HeLa_A485_30min_R1 2 AKLAEQAER 9 1 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1;P31947-2;P31947;P27348;E9PG15 P31946-2;E7EX29;P31947-2;P27348 YWHAB;YWHAZ;SFN;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein theta" 0 1 ; AK(1)LAEQAER;AK(1)LAEQAER 130.53 0.0048194 18759000 21319.8 29066 31805 23244 34151 27367 30918 28555 27734 32047 FALSE TRUE FALSE 26062.31596 32465.01586 43570.99302 24513.76086 30750.80653 28799.8938 24312.11672 21551.84148 33299.95941 24058.27268 1.08329955 1.349432534 1.811060735 1.018932705 1.278180148 1.197089009 1.010551216 0.895818323 1.384137583 1 14.55424544 AK(ac)LAEQAER ddPTM_HeLa_A486_30min_R1 1 AKLAEQAER 9 1 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1;P31947-2;P31947;P27348;E9PG15 P31946-2;E7EX29;P31947-2;P27348 YWHAB;YWHAZ;SFN;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein theta" 0 1 AK(1)LAEQAER 128.91 0.0055201 26245000 13768 16905 14960 4220 18734 14749 15039 16532 14891 17099 FALSE TRUE FALSE 12802.9343 15565.38623 20752.91264 9824.373267 16384.20703 12929.41834 11276.08313 12768.02449 16181.76387 12817.2991 0.998879264 1.214404541 1.619133054 0.766493252 1.278288577 1.008747493 0.879755013 0.996155617 1.262494051 1 13.64580466 -5.274062097 24.99809013 1.030781215 1.271165545 0.242885649 0.202159044 1113.073368 2204333.679 0.05661701 0.084620996 5.32E-06 5.274062097 0.24038433 AK(ac)MQASIEK ddPTM_HeLa_A486_30min_R1 1 AKMQASIEK 9 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 1 AK(1)MQASIEK 163.64 2.08E-05 22957000 14024 16898 12107 4868.9 19336 16037 18417 17768 14098 16494 FALSE TRUE FALSE 13040.99002 15558.94094 16795.15464 11335.04526 16910.69858 14058.51799 13808.8718 13722.61427 15320.02599 12363.79504 1.05477242 1.258427601 1.358414191 0.916793365 1.367759537 1.137071421 1.116879709 1.109903086 1.239103846 1 13.59383402 -13.84131475 0.256539709 5.21E-10 1.189329926 0.129421106 0.131631784 356.0612054 3.795409902 186.9503652 0.174809071 1.44E-14 13.84131475 1.189329926 AK(ac)WDAWNELK ddPTM_HeLa_A485_30min_R1 2 AKWDAWNELK 10 1 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; AK(1)WDAWNELK;AK(1)WDAWNELK 208.33 3.88E-14 181174000 335660 211440 271010 494270 325400 242050 350660 204038 301430 715100 FALSE TRUE FALSE 410326.409 236166.0687 371267.8767 521270.7185 293002.0335 254723.3637 275738.6264 153997.3606 361924.2361 536838.7304 0.764338312 0.439919952 0.691581765 0.97100058 0.545791533 0.47448768 0.513634004 0.286859632 0.674176835 1 19.03412923 -8.02336716 23.69646294 1.000000019 0.583134144 0.323867193 0.179263464 1313.216693 1331723.315 0.183528051 0.047386739 9.48E-09 8.02336716 -0.416865876 AK(ac)WDAWNELK ddPTM_HeLa_A486_30min_R1 2 AKWDAWNELK 10 1 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; AK(1)WDAWNELK;AK(1)WDAWNELK 215.06 3.48E-19 281560000 445720 705960 444460 203617 635250 788940 820860 717260 645470 759840 FALSE TRUE FALSE 414477.3297 650017.1585 616566.8151 474030.6662 555571.0215 691608.6042 615472.1458 553955.5557 701419.8593 569571.1183 0.72770075 1.141239676 1.082510674 0.832258959 0.975419932 1.214262068 1.080588755 0.972583647 1.231487758 1 19.11951647 -6.070193614 13.4031534 1.096687464 0.961419639 0.236877472 0.132404539 3.08005371 585.9463309 0.043254308 0.043261434 8.51E-07 6.070193614 -0.135267825 AK(ac)WDAWNELKGTSK ddPTM_HeLa_A485_30min_R1 2 AKWDAWNELKGTSK 14 2 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; AK(1)WDAWNELKGTSK;AK(1)WDAWNELKGTSK 97.767 0.018382 136616000 27794 26045 29232 38505 47708 30180 45116 36093 31921 55539 FALSE TRUE FALSE 33976.67941 29090.73619 40046.13325 40608.43065 42958.02401 31760.17813 35476.59804 27241.13516 38327.2519 41694.14942 0.814902807 0.697717464 0.960473683 0.973959925 1.030312996 0.761741841 0.850877126 0.653356299 0.919247723 1 15.34755734 -9.283923398 14.15395136 1.000000754 0.850476733 0.127663227 0.116511529 0 0 0.119379791 0.028953852 5.20E-10 9.283923398 -0.14952402 AK(ac)WDAWNELKGTSK ddPTM_HeLa_A486_30min_R1 2 AKWDAWNELKGTSK 14 2 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; AK(1)WDAWNELKGTSK;AK(1)WDAWNELKGTSK 212.69 6.47E-21 181669000 302760 437920 278340 165465 551740 466050 557800 579180 351630 529430 FALSE TRUE FALSE 281538.0875 403217.6243 386120.7022 385210.8821 482535.6244 408553.4894 418232.5402 447313.3574 382109.5715 396857.282 0.709418978 1.016026775 0.972945993 0.97065343 1.215892076 1.029472075 1.053861323 1.127139094 0.962838756 1 18.59826075 -3.726467235 1.213015458 1.057069933 8.43E-14 0.630065244 0.075447161 3.034736997 1.546498828 0.022057775 5.527685688 0.00018773 3.726467235 -1.057069933 AK(ac)WDAWNELKGTSKEDAMK ddPTM_HeLa_A485_30min_R1 2 AKWDAWNELKGTSKEDAMK 19 3 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; AK(1)WDAWNELKGTSKEDAMK;AK(1)WDAWNELKGTSKEDAMK 88.396 0.0017873 80562000 57357 37190.9 40511.8 59627 79229 74547 116988 115326 57755 84957 FALSE TRUE FALSE 70115.86677 41540.05224 55498.80066 62884.27203 71340.68257 78450.16565 91992.5581 87042.11768 69345.89874 63778.78342 1.099360367 0.651314591 0.870176533 0.985974781 1.118564494 1.230035467 1.442369283 1.364750361 1.087287888 1 15.96078896 -5.78033044 1.781658574 1.259683968 0.854742722 0.486924826 0.156868016 0.260643808 1.709648134 0.05513798 0.071912191 1.66E-06 5.78033044 -0.404941246 AK(ac)WDAWNELKGTSKEDAMK ddPTM_HeLa_A486_30min_R1 2 AKWDAWNELKGTSKEDAMK 19 3 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; AK(1)WDAWNELKGTSKEDAMK;AK(1)WDAWNELKGTSKEDAMK 118.54 8.48E-06 89075000 69100 73034 60803 40249 105967 75962 110992 115687 50926 100328 FALSE TRUE FALSE 64256.44683 67246.51985 84347.54996 93701.70607 92675.63076 66590.58077 83220.62765 89347.59553 55340.30668 75205.21577 0.854414766 0.894173618 1.121565161 1.245946908 1.232303236 0.885451628 1.106580532 1.188050518 0.735857295 1 16.1985451 -10.03943924 13.50473607 1.000000293 1.043150076 0 0.168874692 0 0 0.167552147 0.040637365 9.13E-11 10.03943924 0.043149783 AKADS(ph)PVNGLPK ddPTM_HeLa_A485_30min_R1 4 AKADSPVNGLPK 12 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 AKADS(1)PVNGLPK;AKADS(1)PVNGLPK;AKADS(1)PVNGLPK;AKADS(1)PVNGLPK ;;; 177.58 7.79E-12 3883510000 4690020 3676030 2433420 7238150 5471340 5219990 8768090 8882220 3815540 10419790 TRUE FALSE FALSE 5733298.769 4105909.731 3333643.321 7633551.807 4926594.179 5493300.605 6894715.943 6703841.618 4581283.88 7822328.115 0.732940205 0.524896127 0.426170223 0.975866992 0.629811752 0.702259036 0.881414822 0.857013605 0.585667568 1 22.89916662 -8.434069485 0.056324873 1.670565977 2.13E-10 0.274470716 0.156693186 88.2323763 2.26361682 37.221934 28.78621704 3.68E-09 8.434069485 -1.670565977 AKADS(ph)PVNGLPK ddPTM_HeLa_A486_30min_R1 4 AKADSPVNGLPK 12 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 AKADS(1)PVNGLPK;AKADS(1)PVNGLPK;AKADS(1)PVNGLPK;AKADS(1)PVNGLPK ;;; 195.6 3.23E-14 5465090000 4714860 4070060 1678170 2692710 3681230 5189640 7114940 6472890 2981200 8282600 TRUE FALSE FALSE 4384372.662 3747533.623 2328002.367 6268764.962 3219495.807 4549394.981 5334706.758 4999154.249 3239612.816 6208583.049 0.706179273 0.603605298 0.374965165 1.009693341 0.518555648 0.73275898 0.859247064 0.805200512 0.521795841 1 22.56583262 -14 0.126243175 1.98444418 0.552887607 0.219040059 0.177036146 227.0749145 1.824841697 57.42892442 1.451849179 1.00E-14 14 -1.431556573 AKAEKPPLSAS(ph)SPQQRPPEPETGESAGTSR ddPTM_HeLa_A485_30min_R1 1 AKAEKPPLSASSPQQRPPEPETGESAGTSR 30 3 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 AKAEKPPLS(0.042)AS(0.479)S(0.479)PQQRPPEPETGESAGTSR 102.42 0.00025678 354040000 142150 176720 139330 144170 235450 172880 246560 265200 172910 175050 TRUE FALSE FALSE 173770.7771 197385.8667 190873.965 152045.642 212007.7713 181931.7295 193880.4418 200159.2842 207611.451 131413.2566 1.322323041 1.502024011 1.452471159 1.157003837 1.613290598 1.384424481 1.475349191 1.52312856 1.579836437 1 17.00375129 -10.1484036 5.080389539 0.999979004 1.445213111 0.529896542 0.12589458 2.95E-05 4.94E-06 0.119909826 0.029081035 7.11E-11 10.1484036 0.445234107 AKAEKPPLSAS(ph)SPQQRPPEPETGESAGTSR ddPTM_HeLa_A486_30min_R1 1 AKAEKPPLSASSPQQRPPEPETGESAGTSR 30 3 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 AKAEKPPLS(0.015)AS(0.492)S(0.492)PQQRPPEPETGESAGTSR 116.94 6.21E-05 188130000 188550 245780 177680 58156 255860 158590 200010 206310 168830 158400 TRUE FALSE FALSE 175333.6187 226303.4977 246482.4544 135390.107 223767.653 139024.7782 149965.3825 159337.7167 183464.3203 118735.609 1.476672585 1.905944641 2.075893294 1.140265403 1.884587572 1.17087687 1.263019441 1.341953927 1.54514995 1 16.85739314 -5.829331565 1.088720295 1.29258796 1.785100845 0.324241184 0.286182417 0.604484524 1.530087142 0.126008191 0.176194186 1.48E-06 5.829331565 0.492512885 AKAGLESGAEPGDGDS(ph)DTTKK ddPTM_HeLa_A485_30min_R1 1 AKAGLESGAEPGDGDSDTTKK 21 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AKAGLESGAEPGDGDS(1)DTTKK 198.99 9.47E-27 414400000 247090 228010 94651 357030 302680 349650 651100 752740 202950 644670 TRUE FALSE FALSE 302054.318 254673.7861 129666.3437 376533.6449 272544.1164 367957.1333 511987.166 568129.3347 243680.2034 483965.6333 0.624123486 0.526222873 0.267924693 0.77801732 0.563147665 0.760295996 1.05789984 1.173904293 0.503507247 1 18.88454508 -6.428126299 2.703662697 0.947265367 0.543128226 0.441955076 0.20126413 0.258885203 3.695468474 0.079659603 0.066595313 3.73E-07 6.428126299 -0.404137141 AKDDATLSGK(ac)R ddPTM_HeLa_A485_30min_R1 2 AKDDATLSGKR 11 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 1 ; AKDDATLSGK(1)R;AKDDATLSGK(1)R 140.01 0.0024249 178554000 27483 28953 34800 33648 64536 82787 125656 189170 195172 301370 FALSE TRUE FALSE 33596.49853 32338.80149 47673.96815 35486.10504 58110.56924 87121.59931 98808.56908 142775.7609 234341.2302 226244.0053 0.148496746 0.142937717 0.210719255 0.156848819 0.2568491 0.385078045 0.436734529 0.631069808 1.035789787 1 17.78752004 -7.302433286 0.916619397 1.057499906 0.17349728 0.959401247 0.065216203 0.101076812 0.153531499 0.058788387 0.024170931 4.98E-08 7.302433286 -0.884002626 down AKDFVFSLLGLVHR ddPTM_HeLa_A485_30min_R1 2 AKDFVFSLLGLVHR 14 1 Q8N9M5 Q8N9M5 TMEM102 Transmembrane protein 102 0 0 ; ; 157.75 2.29E-07 12202700 32755 38523 32775 26666.9 39709 37214 52282 61823 22260.7 45469 FALSE FALSE TRUE 40041.23675 43027.92974 44899.83638 28123.64522 35755.43253 39162.4675 41111.5236 46660.81232 26728.2183 34134.41509 1.173045931 1.26054393 1.315383207 0.823908807 1.04748924 1.147301554 1.204400998 1.366972663 0.783028455 1 15.05893941 AKDPDAELACS(ph)MQYDDQELEQLSR ddPTM_HeLa_A486_30min_R1 1 AKDPDAELACSMQYDDQELEQLSR 24 1 Q9HCC9-5;Q9HCC9-4;Q9HCC9-3;Q9HCC9-2;Q9HCC9 Q9HCC9-5 ZFYVE28 Lateral signaling target protein 2 homolog 1 0 AKDPDAELACS(1)MQYDDQELEQLSR 175.42 5.74E-15 124030000 102640 121030 96176 47349 120320 108590 133690 129170 87601 124420 TRUE FALSE FALSE 95445.46603 111439.142 133417.9229 110230.8649 105228.3437 95193.26986 100239.348 99760.81076 95194.32521 93264.42216 1.023385594 1.194873023 1.430533957 1.181917631 1.128279586 1.020681495 1.074786565 1.069655593 1.020692811 1 16.50903922 -5.922727274 2.651789466 1.044733745 1.224052867 0.414976154 0.094817248 0.286432029 4.08871869 0.033852041 0.038678203 1.19E-06 5.922727274 0.179319122 AKDQNES(ph)LDEEMFYK ddPTM_HeLa_A485_30min_R1 4 AKDQNESLDEEMFYK 15 1 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK ;;; 252.55 1.80E-50 3572600000 2283200 1611390 1252270 3385690 2841240 2283140 3513970 3408490 2081890 4721650 TRUE FALSE FALSE 2791089.963 1799828.043 1715536.784 3570641.672 2558356.169 2402681.68 2763181.603 2572552.483 2499706.227 3544629.551 0.787413726 0.507761959 0.483981968 1.00733846 0.721755583 0.677837175 0.779540306 0.725760604 0.705209442 1 21.75720343 -14 0.148508765 2.006783449 0.618510568 0.288195659 0.138109492 183.6699862 1.625793856 54.84918166 0.751209442 1.00E-14 14 -1.38827288 AKDQNES(ph)LDEEMFYK ddPTM_HeLa_A486_30min_R1 5 AKDQNESLDEEMFYK 15 1 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK ;;;; 259.49 1.12E-50 5670649000 2286787 2417065 1227093 1424616 2437210 3004520 4044100 3753400 1900211 3672590 TRUE FALSE FALSE 2126495.04 2225527.967 1702256.272 3316578.044 2131512.396 2633852.87 3032223.406 2898832.756 2064922.819 2752949.559 0.772442427 0.808415817 0.618339071 1.204736219 0.774264966 0.956738514 1.101445319 1.052991598 0.750076518 1 21.39254675 -5.24428716 24.98506613 0.975258339 0.740600785 0.400219639 0.136838147 857.4045313 1248950.844 0.036341644 0.062749722 5.70E-06 5.24428716 -0.234657555 AKEAAGPAPS(ph)PMR ddPTM_HeLa_A485_30min_R1 4 AKEAAGPAPSPMR 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR ;;; 135.38 5.59E-06 1311710000 1189150 1916480 1428620 977660 2136670 2300820 2443180 3388860 1399880 1384890 TRUE FALSE FALSE 1453672.315 2140595.665 1957125.988 1031067.09 1923935.632 2421287.377 1921174.634 2557736.771 1680823.076 1039662.41 1.39821571 2.058933404 1.88246297 0.991732586 1.850538804 2.32891692 1.847883135 2.460160863 1.616700825 1 19.98768371 -5.986123042 24.99919236 1.958249275 1.611106396 0.049409158 0.462549157 535.4373404 964579.2327 0.138845587 0.157366882 1.03E-06 5.986123042 -0.347142878 AKEAAGPAPS(ph)PMR ddPTM_HeLa_A486_30min_R1 6 AKEAAGPAPSPMR 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR;AKEAAGPAPS(1)PMR ;;;;; 101.49 0.00033342 1044760000 1764470 1578070 1337180 611115 2128660 1377930 1826860 1914120 1137830 1864680 TRUE FALSE FALSE 1640789.765 1453017.986 1854971.907 1422706.604 1861663.614 1207935.006 1369760.305 1478316.661 1236458.021 1397751.991 1.173877609 1.0395392 1.327110903 1.017853391 1.331898381 0.86419838 0.979973782 1.057638745 0.884604729 1 20.41467697 -6.272529321 24.9997346 0.962303716 1.169741223 0.50794311 0.108435963 628.1591419 1416036.643 0.035783184 0.031853212 5.34E-07 6.272529321 0.207437507 AKEES(ph)PSKAGMNK ddPTM_HeLa_A485_30min_R1 1 AKEESPSKAGMNK 13 2 Q6ZN18-2;Q6ZN18;A0A669KBC9;A0A669KBL4;G5EA50;Q6ZN18-3 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 AKEES(0.989)PS(0.011)KAGMNK 111.06 0.00013408 354560000 409770 322950 189410 751830 540160 565580 1081800 1165600 311400 1090400 TRUE FALSE FALSE 500921.9228 360716.1932 259480.641 792900.5692 486379.7738 595192.8942 850664.5925 879734.7724 373895.1237 818583.3473 0.611937592 0.44065909 0.316987442 0.968625335 0.594172573 0.727101151 1.039191177 1.074703969 0.456758771 1 19.64276979 -5.261747584 24.99996701 0.834034494 0.45494114 0.431509437 0.200214611 26.75110386 2169981.508 0.055984238 0.089233359 5.47E-06 5.261747584 -0.379093354 AKEES(ph)PSKAGMNK ddPTM_HeLa_A486_30min_R1 1 AKEESPSKAGMNK 13 2 Q6ZN18-2;Q6ZN18;A0A669KBC9;A0A669KBL4;G5EA50;Q6ZN18-3 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 AKEES(0.999)PS(0.001)KAGMNK 94.01 0.00057912 378890000 683460 506120 184760 595130 550890 812160 1174100 1137600 366220 1447000 TRUE FALSE FALSE 635552.9834 466013.2079 256304.02 1385492.716 481792.2394 711963.9566 880327.7616 878593.3136 397964.2445 1084661.782 0.585945771 0.429639189 0.236298563 1.27734999 0.44418661 0.65639259 0.811614991 0.810015923 0.366901693 1 20.04881382 AKEVELVS(ph)E ddPTM_HeLa_A485_30min_R1 1 AKEVELVSE 9 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AKEVELVS(1)E 106.38 0.014959 2600000000 2664100 3558100 2870800 2797400 4318800 3865600 4915800 5904700 3024900 3937200 TRUE FALSE FALSE 3256719.854 3974188.844 3932828.384 2950214.879 3888805.108 4067996.839 3865499.172 4456563.067 3631969.684 2955728.499 1.101833222 1.344571684 1.330578362 0.998134599 1.31568414 1.376309374 1.307799134 1.507771458 1.228790021 1 21.49508232 -5.946119007 24.99993306 1.320534898 1.207145118 0.060792298 0.154398214 213.0807711 98864.76353 0.046378053 0.052587789 1.13E-06 5.946119007 -0.113389781 AKFEELNMDLFR ddPTM_HeLa_A485_30min_R1 2 AKFEELNMDLFR 12 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 139.3 7.45E-06 851030000 869580 1090400 915660 933550 1264020 1219050 1420410 1643340 1037800 1459530 FALSE FALSE TRUE 1063015.071 1217912.795 1254400.738 984547.4726 1138169.731 1282877.573 1116927.8 1240308.288 1246076.941 1095696.032 0.970173333 1.111542581 1.144843735 0.898558947 1.038764126 1.170833457 1.019377425 1.131982094 1.137246923 1 20.06341619 -6.050323162 24.98718636 1.096626515 1.035566481 0.117624987 0.080294473 826.5690296 410418.3525 0.026675684 0.026676028 8.91E-07 6.050323162 -0.061060034 AKFEELNMDLFR ddPTM_HeLa_A486_30min_R1 2 AKFEELNMDLFR 12 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 150.11 1.67E-07 1100890000 734100 814630 614830 294420 970330 783710 875610 940420 710320 873560 FALSE FALSE TRUE 682643.3809 750075.752 852908.6417 685424.6392 848622.1634 687023.8284 656523.1167 726306.8952 771891.1095 654814.8901 1.042498256 1.145477544 1.302518704 1.046745652 1.295972612 1.049187853 1.002608717 1.109178955 1.178792849 1 19.3207276 AKFENLCK ddPTM_HeLa_A485_30min_R1 1 AKFENLCK 8 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 0 99.688 0.002944 462460000 344940 326890 301960 414200 468110 430820 551490 546420 381180 516980 FALSE FALSE TRUE 421670.713 365116.9419 413667.5696 436826.6972 421503.3248 453377.069 433659.6562 412409.6382 457679.3296 388106.4003 1.086482245 0.940765062 1.065861241 1.125533351 1.08605095 1.168177254 1.117373112 1.062620039 1.179262515 1 18.5660927 -4.995926517 24.7135531 1.109333374 1.011046001 0.282383723 0.058299052 109.429067 663872.3547 0.014127977 0.02919642 1.01E-05 4.995926517 -0.098287373 AKFENLCK ddPTM_HeLa_A486_30min_R1 1 AKFENLCK 8 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 0 90.15 0.0050504 300010000 241490 338420 213960 134720 424050 294670 358840 326920 201680 334120 FALSE FALSE TRUE 224562.7981 311602.3667 296811.042 313634.9684 370861.6949 258316.6114 269054.4366 252487.4526 219161.7848 250454.1772 0.89662229 1.24414921 1.185091202 1.252264873 1.480756676 1.031392705 1.074266117 1.008118353 0.875057414 1 17.93418715 -6.49211315 24.75990391 0.999007261 1.218515396 0.369924343 0.1401465 676.9469105 544802.2609 0.050513789 0.044491047 3.22E-07 6.49211315 0.219508136 AKGPS(ph)PPGAK ddPTM_HeLa_A485_30min_R1 3 AKGPSPPGAK 10 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 AKGPS(1)PPGAK;AKGPS(1)PPGAK;AKGPS(1)PPGAK ;; 77.527 0.0044733 5149300000 4398370 3252030 2272900 6708300 4670240 4631540 7432500 6936100 3705310 9307500 TRUE FALSE FALSE 5376772.232 3632326.62 3113740.293 7074757.443 4205254.507 4874040.273 5844485.657 5235010.6 4448931.73 6987311.542 0.769505152 0.519846095 0.445627803 1.012514957 0.601841564 0.697555883 0.836442689 0.749216715 0.63671581 1 22.73630604 -14 0.128439431 1.978582796 0.570093232 0.265102726 0.152653118 201.6990257 1.639150276 51.21639966 1.218354053 1.00E-14 14 -1.408489564 AKGPS(ph)PPGAK ddPTM_HeLa_A486_30min_R1 4 AKGPSPPGAK 10 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 AKGPS(1)PPGAK;AKGPS(1)PPGAK;AKGPS(1)PPGAK;AKGPS(1)PPGAK ;;; 71.513 0.0063288 6536300000 7838980 7464780 3132738 4382310 6322520 9414200 11867700 10867120 5468650 13419060 TRUE FALSE FALSE 7289507.983 6873243.647 4345818.051 10202239.15 5529490.586 8252771.721 8898275.936 8392914.004 5942676.985 10058840.03 0.724686739 0.683303803 0.432039682 1.014256029 0.549714537 0.820449644 0.884622472 0.834381895 0.59079148 1 23.26196061 -5.668133548 0.998160383 0.810830243 0.645194002 0.129695127 0.170511844 1.236658543 2.604528861 0.074622318 0.130078677 2.15E-06 5.668133548 -0.165636241 AKGS(ph)ETPGATPGSK ddPTM_HeLa_A485_30min_R1 1 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 AKGS(0.659)ET(0.341)PGATPGSK 107.75 0.00015669 648040000 792960 1913400 2358600 646110 1655300 1436800 1370300 1801000 1637900 1132500 TRUE FALSE FALSE 969351.2163 2137155.486 3231144.29 681405.3533 1490492.52 1512028.626 1077524.211 1359301.926 1966611.506 850188.5921 1.140160225 2.513742839 3.800502994 0.801475531 1.753131639 1.778462614 1.267394341 1.598824001 2.313147371 1 19.69742338 -5.285872015 24.99905146 1.538963367 2.487696726 0.281521554 0.717933619 1010.22116 1033638.552 0.202943791 0.301168022 5.18E-06 5.285872015 0.94873336 AKGS(ph)ETPGATPGSK ddPTM_HeLa_A486_30min_R1 2 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 AKGS(0.701)ET(0.299)PGATPGSK;AKGS(0.756)ET(0.244)PGATPGSK ; 111.06 0.00012595 1974760000 3302300 3062500 2980100 1157520 3408900 2671400 3248800 3395500 2477420 3809400 TRUE FALSE FALSE 3070825.823 2819816.347 4134074.53 2694765.058 2981323.975 2341829.829 2435915.878 2622418.773 2692164.76 2855501.445 1.075406853 0.987503036 1.447757814 0.943709926 1.0440632 0.820111589 0.853060636 0.918374171 0.942799299 1 21.44531268 -5.481856397 24.99930748 0.923388344 1.159247906 0.432415464 0.124983742 479.1522343 291998.4887 0.035249536 0.052276907 3.30E-06 5.481856397 0.235859561 AKGSET(ph)PGATPGSK ddPTM_HeLa_A485_30min_R1 4 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 AKGS(0.008)ET(0.992)PGATPGSK;AKGS(0.153)ET(0.846)PGAT(0.001)PGSK;AKGS(0.02)ET(0.98)PGATPGSK;AKGS(0.089)ET(0.911)PGATPGSK ;;; 152.37 1.00E-07 1792570000 629467 799024 512996 721170 882470 944730 1203960 1429200 604870 1055050 TRUE FALSE FALSE 769489.7625 892462.9062 702774.5679 760565.691 794608.1883 994194.602 946724.1106 1078686.459 726261.8608 792045.4518 0.971522229 1.126782439 0.887290706 0.960255108 1.003235593 1.255224179 1.195290129 1.361899695 0.916944677 1 19.5952237 -6.187013717 7.557880317 1.171355772 0.989250641 0.254924998 0.129849161 0.354364801 32.10526758 0.041597419 0.041588753 6.50E-07 6.187013717 -0.182105131 AKGSET(ph)PGATPGSK ddPTM_HeLa_A486_30min_R1 2 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 AKGS(0.205)ET(0.795)PGATPGSK;AKGSET(1)PGATPGSK ; 234.63 8.97E-35 324471000 637340 493126 214572 224310 488757 521736 661260 618910 302935 758630 TRUE FALSE FALSE 592665.7572 454048.8998 297660.0248 522205.016 427452.5396 457369.5169 495805.7539 477997.7037 329193.6497 568664.1101 1.042207072 0.798448314 0.523437332 0.918301343 0.75167842 0.804287643 0.871878047 0.840562461 0.578889443 1 19.11721723 AKHDELTYF ddPTM_HeLa_A485_30min_R1 1 AKHDELTYF 9 1 P04080;A0A1W2PQG6 P04080 CSTB Cystatin-B 0 0 92.062 0.013613 14308000 46999 54292 45011 48999 65718 61056 71727 78601 50552 69072 FALSE FALSE TRUE 57453.76541 60640.97712 61662.44196 51675.6913 59174.88517 64252.79775 56401.94049 59323.98151 60697.32271 51853.62158 1.107999088 1.169464645 1.189163651 0.996568605 1.141190979 1.239118808 1.087714585 1.14406631 1.170551272 1 15.66215713 -10.22577257 3.42973468 0.999709516 1.138376512 0.310090809 0.061942899 10563866.92 15595419.26 33862.14649 0.015340275 5.95E-11 10.22577257 0.138666996 AKLDPEPEKAAES(ph)PSPR ddPTM_HeLa_A485_30min_R1 1 AKLDPEPEKAAESPSPR 17 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 AKLDPEPEKAAES(0.537)PS(0.463)PR 45.369 0.027823 338920000 268890 342520 229490 347960 454360 488330 722350 959410 290940 552050 TRUE FALSE FALSE 328703.6528 382574.7345 314387.9009 366968.1737 409122.323 513898.2037 568014.0214 724113.1932 349328.9893 414434.0947 0.79313854 0.923125629 0.758595649 0.885468108 0.987183073 1.239999822 1.370577442 1.747233643 0.84290601 1 18.66078317 -6.141751642 2.220098744 1.303603145 0.839799078 0.396990138 0.228804258 0.283043454 2.741653994 0.083569915 0.083359895 7.22E-07 6.141751642 -0.463804066 AKLNWLSVDFNNWKDWEDDS(ph)DEDMS(ph)NFDR ddPTM_HeLa_A485_30min_R1 1 AKLNWLSVDFNNWKDWEDDSDEDMSNFDR 29 2 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 2 0 AKLNWLS(0.003)VDFNNWKDWEDDS(1)DEDMS(0.998)NFDR 52.685 0.019629 1010800000 220120 144120 115220 221140 280630 298930 513260 557120 131260 397540 TRUE FALSE FALSE 269084.9346 160973.5803 157844.6727 233220.3182 252689.4918 314581.5126 403597.8081 420485.4465 157602.678 298440.5942 0.901636506 0.539382321 0.528898132 0.781463121 0.846699466 1.054084192 1.352355597 1.408941862 0.528087268 1 18.18708426 -6.008315952 1.974030826 1.113919339 0.656782648 0.345735072 0.245344419 0.341795314 2.679449759 0.091580316 0.099967299 9.81E-07 6.008315952 -0.457136691 AKLNWLSVDFNNWKDWEDDS(ph)DEDMSNFDR ddPTM_HeLa_A485_30min_R1 6 AKLNWLSVDFNNWKDWEDDSDEDMSNFDR 29 2 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 1 0 AKLNWLSVDFNNWKDWEDDS(0.986)DEDMS(0.014)NFDR;AKLNWLSVDFNNWKDWEDDS(0.86)DEDMS(0.14)NFDR;AKLNWLSVDFNNWKDWEDDS(0.973)DEDMS(0.027)NFDR;AKLNWLSVDFNNWKDWEDDS(0.999)DEDMS(0.001)NFDR;AKLNWLSVDFNNWKDWEDDS(1)DEDMSNFDR;AKLNWLSVDFNNWKDWEDDS(1)DEDMSNFDR ;;;;; 459 3.53E-267 4521360000 688668 448299 382328 787875 899167 1042387 1707346 1889211 449427 1388725 TRUE FALSE FALSE 841859.8207 500723.6684 523767.0372 830914.6162 809642.7763 1096964.771 1342557.579 1425879.04 539622.8765 1042541.415 0.807507317 0.480291393 0.502394466 0.797008737 0.776604905 1.052202585 1.287773857 1.367695345 0.5176033 1 19.99167327 -5.968843359 1.750100152 1.083908199 0.604516738 0.394442842 0.233484941 0.336754946 2.097842802 0.088877315 0.100439758 1.07E-06 5.968843359 -0.479391461 AKLNWLSVDFNNWKDWEDDS(ph)DEDMSNFDR ddPTM_HeLa_A486_30min_R1 4 AKLNWLSVDFNNWKDWEDDSDEDMSNFDR 29 2 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 1 0 AKLNWLSVDFNNWKDWEDDS(0.866)DEDMS(0.134)NFDR;AKLNWLSVDFNNWKDWEDDS(1)DEDMSNFDR;AKLNWLSVDFNNWKDWEDDS(1)DEDMSNFDR;AKLNWLSVDFNNWKDWEDDS(1)DEDMSNFDR ;;; 521.39 0 2623470000 531627 731418 443731 718681 1129066 1071045 1631010 1623792 652431 1414020 TRUE FALSE FALSE 494362.6926 673457.7739 615555.5267 1673125.688 987448.0142 938910.3575 1222914.047 1254090.009 708984.2444 1059940.188 0.466406216 0.635373374 0.58074553 1.57850953 0.931607297 0.885814471 1.153757599 1.183170544 0.668890804 1 20.01555143 -5.059472498 24.99988971 1.058417836 0.565180734 0.503456626 0.226019574 194.2359488 81648.75188 0.060037165 0.1039877 8.72E-06 5.059472498 -0.493237102 AKLQIELGK ddPTM_HeLa_A485_30min_R1 1 AKLQIELGK 9 1 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 0 96.847 0.0369 0 15205 22224 17666 14579 24709 24635 30071 35907 17621 19678 FALSE FALSE TRUE 18587.29979 24822.90348 24201.38854 15375.41385 22248.8852 25924.85051 23646.08519 27100.75195 21157.37307 14772.63675 1.258224927 1.680329917 1.638257879 1.040803623 1.506087612 1.754923711 1.600667883 1.834523681 1.432200184 1 13.85063973 -5.998868134 24.99960759 1.586841648 1.419895543 0.016818677 0.272661417 108.9997715 2407375.462 0.082963839 0.093340497 1.00E-06 5.998868134 -0.166946105 AKLVPS(ph)QEETKLSVEESEAAGDGVDTK ddPTM_HeLa_A485_30min_R1 1 AKLVPSQEETKLSVEESEAAGDGVDTK 27 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 AKLVPS(0.257)QEET(0.257)KLS(0.257)VEES(0.23)EAAGDGVDTK 43.579 0.027891 93313000 35096 66483 21093 35009 64761 99821 176080 276970 40017 59575 TRUE FALSE FALSE 42902.98412 74257.60852 28896.17845 36921.45302 58313.16745 105047.4732 138459.0696 209042.6732 48048.04484 44724.0489 0.959282202 1.660350759 0.64609934 0.825539144 1.303843657 2.348791664 3.095852745 4.674055198 1.074322339 1 15.44876318 -6.296298377 2.987514305 2.760835429 1.044885089 0.29376587 1.01695333 0.282774223 5.080822748 0.369826724 0.335479605 5.05E-07 6.296298377 -1.71595034 AKNEQEHHAGGDS(ph)QKDIMQR ddPTM_HeLa_A485_30min_R1 1 AKNEQEHHAGGDSQKDIMQR 20 2 E9PBY3;Q86SF2 E9PBY3 GALNT7 N-acetylgalactosaminyltransferase 7 1 0 AKNEQEHHAGGDS(1)QKDIMQR 65.428 0.0036128 121680000 38069 29086 19590 57355 30861 39702 64154 59684 27178 90715 TRUE FALSE FALSE 46537.31771 32487.35469 26837.15621 60488.15842 27788.37048 41780.73533 50446.97381 45046.40542 32632.37531 68101.41999 0.683353118 0.477043719 0.394076309 0.888207007 0.408043922 0.61350755 0.740762437 0.66146059 0.4791732 1 16.05539726 -14 0.322741554 4.882578241 0.578345492 0.391461282 0.150216881 343.7785314 3.035443227 912.9297776 0.13100794 1.00E-14 14 -4.304232749 AKNEQEHHAGGDS(ph)QKDIMQR ddPTM_HeLa_A486_30min_R1 1 AKNEQEHHAGGDSQKDIMQR 20 2 E9PBY3;Q86SF2 E9PBY3 GALNT7 N-acetylgalactosaminyltransferase 7 1 0 AKNEQEHHAGGDS(1)QKDIMQR 110.89 1.01E-05 78794000 71215 62495 43389 51498 88533 95397 115490 99565 82071 183830 TRUE FALSE FALSE 66223.19625 57542.6686 60190.3828 119889.9466 77428.3656 83627.88807 86593.18047 76896.22299 89184.98036 137797.7715 0.480582491 0.417587803 0.436802295 0.87004271 0.561898533 0.606888538 0.628407699 0.558036768 0.64721642 1 17.07219303 -14 0.145000279 2.437549646 0.442346586 0.572246339 0.114983336 109.291303 0.955006818 45.5287699 0.686403763 1.00E-14 14 -1.995203061 AKNS(ph)PPQAPSTR ddPTM_HeLa_A485_30min_R1 4 AKNSPPQAPSTR 12 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 AKNS(0.996)PPQAPS(0.002)T(0.002)R;AKNS(0.998)PPQAPS(0.002)T(0.001)R;AKNS(1)PPQAPSTR;AKNS(1)PPQAPSTR ;;; 135.23 7.96E-06 4289500000 666280 700610 562330 753710 868280 783320 1015180 1119820 686570 1105780 TRUE FALSE FALSE 814491.6874 782540.245 770359.2675 794883.2688 781830.9945 824333.424 798278.4997 845182.3892 824358.3014 830129.3964 0.981162324 0.94267261 0.927999021 0.957541405 0.941818225 0.993017989 0.961631407 1.018133309 0.993047957 1 19.66297671 -6.672688492 1.16260728 1.002648447 0.948611149 0.564990823 0.018542449 0.339310082 0.927610485 0.011648097 0.007196471 2.12E-07 6.672688492 -0.054037297 AKNS(ph)PPQAPSTR ddPTM_HeLa_A486_30min_R1 3 AKNSPPQAPSTR 12 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 AKNS(0.998)PPQAPS(0.001)T(0.001)R;AKNS(0.999)PPQAPS(0.001)T(0.001)R;AKNS(1)PPQAPSTR ;; 86.772 0.0012305 1212920000 682970 668890 404933 257088 674960 664570 744610 696760 478630 715590 TRUE FALSE FALSE 635097.3299 615884.7203 561733.9021 598513.8565 590300.223 582582.1103 558300.7023 538122.9582 520118.0338 536401.6063 1.183995951 1.148178367 1.047226361 1.115794303 1.100481833 1.08609315 1.040825933 1.003209073 0.969642946 1 19.03295403 -6.646664921 0.598604441 0.973974725 1.139654044 0.754231557 0.03258119 0.43636838 0.32426201 0.031124403 0.025177993 2.26E-07 6.646664921 0.165679319 AKNWEDEDFYDS(ph)DDDTFLDR ddPTM_HeLa_A485_30min_R1 5 AKNWEDEDFYDSDDDTFLDR 20 1 A0A087WWF4;A0A087X0M4;Q9BWU0 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(1)DDDTFLDR ;;;; 310.9 5.35E-102 4290961000 2084666 2137468 1628339 2494100 2995130 2494490 3712380 3913010 2077070 3235760 TRUE FALSE FALSE 2548392.76 2387426.289 2230729.357 2630346.368 2696924.341 2625097.639 2919199.686 2953338.162 2493918.897 2429144.582 1.049090605 0.982825933 0.91831889 1.082828246 1.110236237 1.080667515 1.201739784 1.215793487 1.026665484 1 21.21201693 -5.4447745 5.173953208 1.118511648 0.983878855 0.373441186 0.070010605 0.213247247 10.06338712 0.020213347 0.030001504 3.59E-06 5.4447745 -0.134632793 AKNWEDEDFYDS(ph)DDDTFLDR ddPTM_HeLa_A486_30min_R1 5 AKNWEDEDFYDSDDDTFLDR 20 1 A0A087WWF4;A0A087X0M4;Q9BWU0 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(1)DDDTFLDR;AKNWEDEDFYDS(0.998)DDDT(0.002)FLDR;AKNWEDEDFYDS(1)DDDTFLDR ;;;; 291.25 5.37E-87 4300970000 2530660 2588730 1622170 1332681 2796060 2663080 3621140 3691090 1914750 3639020 TRUE FALSE FALSE 2353273.802 2383589.607 2250317.667 3102548.718 2445352.083 2334536.266 2715092.471 2850709.383 2080722.072 2727785.706 0.862704793 0.873818497 0.824961309 1.137387263 0.89646048 0.855835655 0.995346689 1.045063539 0.762787952 1 21.37929888 AKPAMPQDSVPS(ph)PR ddPTM_HeLa_A485_30min_R1 12 AKPAMPQDSVPSPR 14 1 P53396 P53396 ACLY ATP-citrate synthase 1 0 AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.013)VPS(0.987)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.001)VPS(0.999)PR;AKPAMPQDS(0.029)VPS(0.971)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.004)VPS(0.996)PR;AKPAMPQDS(0.001)VPS(0.999)PR;AKPAMPQDS(0.001)VPS(0.999)PR;AKPAMPQDSVPS(1)PR ;;;;;;;;;;; 197.28 5.00E-22 68660040000 18105500 22566370 20370090 18204240 23911900 22459610 26608660 29924040 20356450 24116230 TRUE FALSE FALSE 22133006.01 25205310.67 27905833.96 19198691.54 21531147.28 23635560.45 20923502.42 22585122.27 24441802.79 18104497.69 1.222514228 1.392212648 1.541375764 1.060437681 1.189270625 1.305507662 1.155707426 1.247486821 1.350040372 1 24.10984481 -14 0.149406992 0.08429835 1.353954114 0.28244401 0.128428692 187.9846789 1.669280786 51.73075496 0.691316206 1.00E-14 14 1.269655764 AKPAMPQDSVPS(ph)PR ddPTM_HeLa_A486_30min_R1 15 AKPAMPQDSVPSPR 14 1 P53396 P53396 ACLY ATP-citrate synthase 1 0 AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.012)VPS(0.988)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.035)VPS(0.965)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDS(0.023)VPS(0.977)PR;AKPAMPQDS(0.002)VPS(0.998)PR;AKPAMPQDS(0.001)VPS(0.999)PR ;;;;;;;;;;;;;; 180.76 1.23E-17 49099750000 20061360 21624230 16179420 7842480 22770350 19392710 22152060 22671340 16929000 25414450 TRUE FALSE FALSE 18655162.26 19910647.26 22444524.72 18257689.78 19914280.38 17000234.61 16609380.29 17509570.79 18396419.35 19050506.3 0.979247584 1.045150556 1.178158962 0.958383441 1.045341266 0.89237705 0.871860308 0.919113147 0.96566564 1 24.183326 -6.253236767 24.35556232 0.921126368 1.044474364 0.427575587 0.064032398 398.9159961 1184479.697 0.021664762 0.021295664 5.58E-07 6.253236767 0.123347997 AKPPADPAAAAS(ph)PCR ddPTM_HeLa_A485_30min_R1 2 AKPPADPAAAASPCR 15 1 Q9GZT9-2;Q9GZT9 Q9GZT9-2 EGLN1 Egl nine homolog 1 1 0 AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR ; 67.199 0.0057163 777880000 1324140 1564160 1391120 1380600 1946850 1665170 1912560 2232900 1548660 1928830 TRUE FALSE FALSE 1618690.375 1747074.906 1905753.177 1456018.682 1753014.778 1752355.726 1503925.932 1685277.774 1859461.857 1448008.178 1.117873779 1.206536628 1.316120451 1.005532085 1.210638727 1.210183583 1.038617015 1.163859292 1.284151488 1 20.46563832 -10.44054501 3.029635293 0.996576954 1.170941968 0.237497623 0.092742992 19905676.46 23581600.75 583496.4411 0.023086374 3.63E-11 10.44054501 0.174365015 AKPPADPAAAAS(ph)PCR ddPTM_HeLa_A486_30min_R1 3 AKPPADPAAAASPCR 15 1 Q9GZT9-2;Q9GZT9 Q9GZT9-2 EGLN1 Egl nine homolog 1 1 0 AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR ;; 119.27 4.35E-05 1981450000 4248500 4887500 3767000 1734280 5361600 4547500 5289100 5287400 3913400 5568700 TRUE FALSE FALSE 3950702.089 4500196.7 5225683.284 4037491.486 4689098.133 3986475.686 3965711.238 4083574.443 4252616.663 4174261.274 0.946443414 1.078082181 1.251882175 0.967234972 1.123336041 0.955013456 0.950039055 0.978274759 1.018771079 1 21.99308947 -6.2697883 24.79544815 0.977163051 1.077674205 0.247316303 0.080828362 796.7164148 2366160.151 0.028433571 0.02548472 5.37E-07 6.2697883 0.100511154 AKPTGSGKEEGPAPCK(ac)QMK ddPTM_HeLa_A485_30min_R1 1 AKPTGSGKEEGPAPCKQMK 19 3 D6RCB6;Q8IUF8-2;Q8IUF8-4;Q8IUF8 D6RCB6 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA 0 1 AKPTGSGKEEGPAPCK(1)QMK 75.97 0.0046197 5879700 9712.2 7164.9 7363.5 11451 15137 13913 20103 28285 15611 30856 FALSE TRUE FALSE 11872.64538 8002.772729 10087.56507 12076.53913 13629.90713 14641.46317 15807.82982 21348.0594 18743.98451 23164.16706 0.512543592 0.345480703 0.43548145 0.52134571 0.588404802 0.632073803 0.682425998 0.921598404 0.809180164 1 14.49960719 -6.789977842 0.546706587 0.992221129 0.399064422 0.907746012 0.060799989 0.229656535 0.144082954 0.055795072 0.044671659 1.62E-07 6.789977842 -0.593156707 AKPTGSGKEEGPAPCK(ac)QMK ddPTM_HeLa_A486_30min_R1 2 AKPTGSGKEEGPAPCKQMK 19 3 D6RCB6;Q8IUF8-2;Q8IUF8-4;Q8IUF8 D6RCB6 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA 0 1 ; AKPTGSGKEEGPAPCK(1)QMK;AKPTGSGKEEGPAPCK(1)QMK 155.92 3.88E-11 51539000 72810 81241 38698 44036 99488 102792 125850 130750 76158 130288 FALSE TRUE FALSE 67706.39499 74803.16729 53682.90197 102518.0335 87009.28735 90110.56815 94360.99889 100981.0793 82759.43676 97663.03677 0.693265305 0.765931203 0.549674716 1.049711711 0.890913187 0.922668096 0.966189482 1.033974394 0.847397741 1 16.57552502 -5.265978523 24.99999612 0.95609621 0.679254485 0.749500655 0.076511451 181.4392869 999304.3295 0.020573963 0.03170076 5.42E-06 5.265978523 -0.276841725 AKPVGS(ph)PLFK ddPTM_HeLa_A485_30min_R1 2 AKPVGSPLFK 10 1 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 0 AKPVGS(1)PLFK;AKPVGS(1)PLFK ; 109.83 0.00036727 2017860000 710080 636600 487210 862920 771160 790440 1054000 1115000 622010 1188600 TRUE FALSE FALSE 868034.8463 711044.8323 667449.2535 910059.1346 694380.6027 831826.2161 828804.2896 841544.5017 746841.7016 892303.8946 0.972801813 0.796863979 0.748006657 1.019898198 0.77818847 0.932223003 0.928836347 0.943114231 0.836981331 1 19.76717561 AKPVGS(ph)PLFK ddPTM_HeLa_A486_30min_R1 2 AKPVGSPLFK 10 1 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 0 AKPVGS(1)PLFK;AKPVGS(1)PLFK ; 136.33 1.97E-05 2233000000 4345700 3880400 1943810 1411410 3054060 3814060 4778100 4284300 3189890 5125900 TRUE FALSE FALSE 4041088.871 3572902.972 2696505.289 3285833.809 2670991.317 3343520.056 3582568.842 3308858.416 3466392.234 3842341.276 1.051725649 0.92987653 0.701787034 0.855164488 0.695146819 0.870177794 0.93239215 0.861156825 0.90215626 1 21.87355423 -9.343869803 8.409822506 0.999999995 0.86013095 0.134052063 0.100488805 0 0 0.101209335 0.02454687 4.53E-10 9.343869803 -0.139869045 AKPVVS(ph)DFDS(ph)DEEQDER ddPTM_HeLa_A485_30min_R1 3 AKPVVSDFDSDEEQDER 17 1 P51531;P51531-2;F6VDE0;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0 P51531 SMARCA2 Probable global transcription activator SNF2L2 2 0 AKPVVS(1)DFDS(1)DEEQDER;AKPVVS(1)DFDS(1)DEEQDER;AKPVVS(1)DFDS(1)DEEQDER ;; 232.44 4.87E-35 2617700000 3562150 4393610 2349910 3236850 2266060 3577840 3830620 4096140 2292320 3700120 TRUE FALSE FALSE 4354537.978 4907404.47 3219239.497 3413670.919 2040443.11 3765170.17 3012176.744 3091555.243 2752367.598 2777748.18 1.567650376 1.766684434 1.158938568 1.228934626 0.734567347 1.355475704 1.084395182 1.112971746 0.990862893 1 21.40548439 -4.822958669 5.46421516 1.085165302 1.666877858 0.681185471 0.16013181 0.098007548 5.69342638 0.040834428 0.089993614 1.50E-05 4.822958669 0.581712556 AKPVVS(ph)DFDS(ph)DEEQDER ddPTM_HeLa_A486_30min_R1 4 AKPVVSDFDSDEEQDER 17 1 P51531;P51531-2;F6VDE0;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0 P51531 SMARCA2 Probable global transcription activator SNF2L2 2 0 AKPVVS(1)DFDS(1)DEEQDER;AKPVVS(1)DFDS(1)DEEQDER;AKPVVS(1)DFDS(1)DEEQDER;AKPVVS(1)DFDS(1)DEEQDER ;;; 217.71 5.27E-34 2012870000 5040760 4287280 1793420 1153661 2342670 3319060 3417840 3076230 3036330 5732490 TRUE FALSE FALSE 4687428.755 3947540.319 2487880.253 2685781.111 2048830.484 2909588.123 2562660.282 2375839.583 3299521.529 4297037.192 1.090851334 0.918665616 0.578975732 0.62503092 0.476800733 0.67711495 0.596378427 0.552901796 0.767859663 1 22.03491083 -4.601908595 3.571217924 0.634206275 1.064275135 0.50694192 0.138682071 0.153196228 3.729372764 0.033648294 0.112495386 2.50E-05 4.601908595 0.43006886 AKPVVSDFDS(ph)DEEQDER ddPTM_HeLa_A485_30min_R1 3 AKPVVSDFDSDEEQDER 17 1 P51531;P51531-2;F6VDE0;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 AKPVVSDFDS(1)DEEQDER;AKPVVSDFDS(1)DEEQDER;AKPVVSDFDS(1)DEEQDER ;; 233.26 9.81E-36 1304500000 1606850 1971850 1057420 1333400 1031920 1695940 1646630 1709690 1141470 1583250 TRUE FALSE FALSE 1964288.239 2202440.705 1448603.661 1406240.266 929178.4215 1784736.796 1294814.049 1290385.847 1370552.559 1188574.913 1.652641511 1.853009584 1.218773546 1.183131371 0.7817584 1.501577037 1.089383627 1.085657987 1.153105744 1 20.1808014 -4.830962413 5.125677389 1.125312689 1.752570238 0.673732095 0.174975837 0.103392599 5.006700285 0.045017501 0.09998578 1.48E-05 4.830962413 0.627257549 AKPVVSDFDS(ph)DEEQDER ddPTM_HeLa_A486_30min_R1 4 AKPVVSDFDSDEEQDER 17 1 P51531;P51531-2;F6VDE0;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 AKPVVSDFDS(1)DEEQDER;AKPVVSDFDS(1)DEEQDER;AKPVVSDFDS(1)DEEQDER;AKPVVSDFDS(1)DEEQDER ;;; 217.26 2.39E-34 1527340000 2249490 1856110 816950 547860 1103640 1493470 1570820 1400160 1435860 2408070 TRUE FALSE FALSE 2091812.367 1709025.084 1133294.919 1275445.767 965211.1802 1309220.856 1177784.222 1081374.133 1560321.501 1805073.598 1.158851567 0.946789696 0.627838621 0.706589343 0.534721233 0.72530054 0.652485429 0.599074816 0.864408799 1 20.78362623 -4.543501342 3.155775088 0.691257291 1.141501395 0.542043169 0.12973654 0.165314139 3.202985949 0.0317235 0.131356253 2.86E-05 4.543501342 0.450244103 AKRPS(ph)SEDFVFL ddPTM_HeLa_A485_30min_R1 2 AKRPSSEDFVFL 12 2 K7EQ67;K7EN30;Q86TL0-2;Q86TL0 K7EQ67 ATG4D "Cysteine protease ATG4D;Cysteine protease ATG4D, mitochondrial" 1 0 AKRPS(0.5)S(0.5)EDFVFL;AKRPS(0.963)S(0.037)EDFVFL ; 71.607 0.0080059 83301000 180399 205264 160417 208869 259940 217576 286840 306300 170969 261013 TRUE FALSE FALSE 220528.1352 229267.8392 219761.9238 220278.9846 234059.4609 228967.9429 225554.2907 231179.4447 205280.9101 195947.2627 1.125446368 1.170048696 1.121536075 1.12417485 1.194502325 1.168518201 1.151096921 1.17980441 1.047633467 1 17.58010589 -7.900714107 4.210981617 1.001625717 1.154319671 0.830160447 0.024014196 0.076065585 2.266256848 0.023700316 0.006240992 1.26E-08 7.900714107 0.152693954 AKRPS(ph)SEDFVFL ddPTM_HeLa_A486_30min_R1 2 AKRPSSEDFVFL 12 2 K7EQ67;K7EN30;Q86TL0-2;Q86TL0 K7EQ67 ATG4D "Cysteine protease ATG4D;Cysteine protease ATG4D, mitochondrial" 1 0 AKRPS(0.881)S(0.119)EDFVFL;AKRPS(0.831)S(0.169)EDFVFL ; 83.692 0.0028141 87976000 315030 290800 186371 143806 307630 324540 391130 391750 246570 392990 TRUE FALSE FALSE 292948.0238 267755.9489 258538.8424 334787.6356 269044.1769 284501.5545 293265.137 302557.0768 267942.8861 294582.7461 0.99445072 0.908932897 0.877644213 1.136480802 0.913305957 0.965778065 0.995527202 1.027069918 0.90956748 1 18.16831341 AKS(ph)FTCSEKPMAR ddPTM_HeLa_A485_30min_R1 2 AKSFTCSEKPMAR 13 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 AKS(0.998)FT(0.002)CSEKPMAR;AKS(0.83)FT(0.151)CS(0.019)EKPMAR ; 130.4 9.35E-06 654079000 434341 373992 294936 493930 546110 493000 699630 780490 339647 590700 TRUE FALSE FALSE 530958.657 417727.1111 404045.0997 520912.1452 491737.3709 518812.7177 550148.335 589073.6037 407811.0375 443449.361 1.197337743 0.941995068 0.911141463 1.174682367 1.108891824 1.169948056 1.240611405 1.32838979 0.919633837 1 18.75840984 -5.282806343 24.15693727 1.153096384 1.009341778 0.136132202 0.129828839 799.5219731 903916.8805 0.036044443 0.053526511 5.21E-06 5.282806343 -0.143754606 AKS(ph)FTCSEKPMAR ddPTM_HeLa_A486_30min_R1 1 AKSFTCSEKPMAR 13 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 AKS(0.99)FT(0.008)CS(0.002)EKPMAR 104.21 0.00020805 670510000 419190 460850 232360 173790 448620 521540 592710 641770 335130 525660 TRUE FALSE FALSE 389806.9457 424330.5676 322336.0148 404591.9029 392349.8964 457197.6974 444407.689 495652.9807 364179.3382 394031.3145 0.989279104 1.076895546 0.818046696 1.026801394 0.99573278 1.160308028 1.127848657 1.257902513 0.924239584 1 18.58795076 -6.155155358 5.306459468 1.111944673 0.977944621 0.216339505 0.104725645 0.310569275 12.82999318 0.034013298 0.034054211 7.00E-07 6.155155358 -0.134000052 AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNR ddPTM_HeLa_A485_30min_R1 4 AKSPAPGLASGDRPPSVSSVHSEGDCNR 28 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AKS(0.972)PAPGLAS(0.027)GDRPPSVSSVHSEGDCNR;AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;AKS(0.999)PAPGLAS(0.001)GDRPPSVSSVHSEGDCNR ;;; 164.72 2.99E-14 1651440000 125570.3 169968 177478 115739 267868 157793 217938 191642 196946 241007 TRUE FALSE FALSE 153502.98 189844.2791 243134.4977 122061.5285 241198.1214 166054.7975 171373.7659 144641.499 236471.2557 180928.3903 0.848418425 1.04927855 1.343816176 0.674639996 1.333113731 0.91779293 0.947191127 0.79944059 1.306988114 1 17.46505928 AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNR ddPTM_HeLa_A486_30min_R1 2 AKSPAPGLASGDRPPSVSSVHSEGDCNR 28 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;AKS(1)PAPGLASGDRPPSVSSVHSEGDCNR ; 146.01 1.94E-09 952300000 43825 60132 33918 0 77015 54387 75595 53955 63528 20676.6 TRUE FALSE FALSE 40753.09381 55366.92132 47051.95796 0 67355.06056 47677.28491 56680.33144 41670.62433 69034.65819 15499.04478 2.629393901 3.57227959 3.035797278 0 4.345755595 3.076143439 3.657020949 2.688593067 4.454123411 1 13.91989168 AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNRR ddPTM_HeLa_A485_30min_R1 1 AKSPAPGLASGDRPPSVSSVHSEGDCNRR 29 3 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AKS(1)PAPGLASGDRPPSVSSVHSEGDCNRR 109.84 0.00021313 658170000 49055 58374 46103 67354 67259 76168 85990 93219 73295 82537 TRUE FALSE FALSE 59967.11551 65200.33151 63158.41821 71033.37847 60562.4578 80156.0387 67617.53403 70356.89409 88004.6342 61962.04488 0.96780401 1.052262424 1.019308164 1.146401456 0.977412187 1.293631268 1.091273443 1.135483734 1.420299062 1 15.91909714 -5.848746086 0.84425879 1.193858528 1.006348515 0.241935218 0.12120374 0.89361805 1.395573836 0.063730756 0.095329973 1.42E-06 5.848746086 -0.187510013 AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNRR ddPTM_HeLa_A486_30min_R1 1 AKSPAPGLASGDRPPSVSSVHSEGDCNRR 29 3 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 AKS(1)PAPGLASGDRPPSVSSVHSEGDCNRR 122.48 1.32E-05 536470000 43641 72379 44915 12669 70016 46921 69187 78352 37880 34603 TRUE FALSE FALSE 40581.99126 66643.42444 62307.29087 29494.07226 61233.94041 41132.36408 51875.68081 60512.96001 41163.4689 25938.18357 1.564565659 2.569317325 2.402145497 1.13709089 2.360764401 1.585784292 1.99997354 2.332968299 1.586983483 1 14.66278983 -8.023376575 6.659248788 1.000106725 1.995942627 0.343103781 0.428101789 0.196995837 43.68161781 0.401875262 0.104134295 9.48E-09 8.023376575 0.995835902 AKS(ph)PMFPALGEASSDDDLFQSAKPKPAK ddPTM_HeLa_A485_30min_R1 1 AKSPMFPALGEASSDDDLFQSAKPKPAK 28 3 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 AKS(1)PMFPALGEASSDDDLFQSAKPKPAK 150.12 2.96E-09 156530000 95507 58411 36286 145320 98236 123300 167260 157370 69298 203800 TRUE FALSE FALSE 116752.2027 65241.65834 49709.70139 153258.4636 88455.27891 129755.7973 131523.5346 118774.7608 83205.47296 152996.4107 0.763104194 0.426426071 0.324907631 1.001712805 0.578152641 0.848097003 0.859651112 0.776323838 0.543839379 1 17.22313828 -5.256278562 24.99803483 0.786898122 0.496973984 0.37182712 0.175718324 465.0628037 2252670.904 0.0468396 0.078059803 5.54E-06 5.256278562 -0.289924138 AKS(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_HeLa_A485_30min_R1 32 AKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 32 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1W2PP35;Q5RI18;A0A1W2PRI6 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.999)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 301.02 4.59E-93 2.17E+11 3374417.6 2085120.9 2062870.16 4863754 3856044.62 3502203.4 5368758.85 4627187.5 2968655.6 7381751.8 TRUE FALSE FALSE 4125045.154 2328957.651 2826011.675 5129448.565 3472123.278 3685573.355 4221679.663 3492362.51 3564437.549 5541616.927 0.744375731 0.420266807 0.509961571 0.925623087 0.626554185 0.665071838 0.761813694 0.63020641 0.643212549 1 22.40187556 -14 0.216980469 2.683058979 0.61255366 0.378753968 0.130763759 167.5160341 1.675107295 123.3457225 0.268988734 1.00E-14 14 -2.070505319 AKS(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_HeLa_A486_30min_R1 31 AKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 32 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1W2PP35;Q5RI18;A0A1W2PRI6 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 302.87 3.37E-93 1.90E+11 3353203.4 4629282.3 2850293.9 2698997.7 5426583 6442039.2 7550352.5 6855885 4826266.1 6794561.6 TRUE FALSE FALSE 3118161.158 4262441.111 3954004.032 6283403.045 4745930.359 5647285.901 5661174.445 5294949.648 5244610.731 5093159.15 0.612225353 0.836895331 0.776336241 1.233694621 0.931824477 1.10879824 1.111525141 1.039619908 1.029736275 1 22.28012937 -5.155049529 6.693084597 1.064443741 0.745594668 0.726214698 0.091049087 0.124678627 6.807572447 0.023542833 0.041184151 7.00E-06 5.155049529 -0.318849073 AKS(ph)PT(ph)PDGSER ddPTM_HeLa_A485_30min_R1 2 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 AKS(0.965)PT(0.996)PDGS(0.039)ER;AKS(0.994)PT(0.816)PDGS(0.19)ER ; 167.59 7.70E-07 5759540000 2296590 2330440 1421960 4283180 2644660 2212320 3755320 3821760 1937740 5370100 TRUE FALSE FALSE 2807458.522 2602964.686 1948002.177 4517159.278 2381348.364 2328153.654 2952965.204 2884467.368 2326626.644 4031432.899 0.696392224 0.645667372 0.483203423 1.120484798 0.590695275 0.577500286 0.732485267 0.715494327 0.57712151 1 21.94286128 -10.19070133 4.924084192 1.000032625 0.684784242 0.253724518 0.163495265 5.76E-05 9.46E-06 0.155602638 0.037735283 6.45E-11 10.19070133 -0.315248383 AKS(ph)PT(ph)PDGSER ddPTM_HeLa_A486_30min_R1 1 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 AKS(0.776)PT(0.925)PDGS(0.3)ER 181.77 3.09E-09 3677100000 1473300 906640 692510 1006600 957940 1721900 1875500 1477400 1178000 2586100 TRUE FALSE FALSE 1370029.278 834794.5445 960668.4181 2343415.671 837786.2328 1509469.485 1406230.063 1141028.271 1280109.988 1938523.727 0.706738462 0.430634164 0.495567016 1.208866127 0.432177446 0.778669595 0.725412871 0.588606812 0.660353015 1 20.88652696 -11.55561197 1.850467008 4.533506252 0.668853184 0.17667917 0.213918557 8657393.443 454854.1864 128290363.3 0.057011926 2.78E-12 11.55561197 -3.864653068 AKS(ph)PTPDGS(ph)ER ddPTM_HeLa_A486_30min_R1 2 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 AKS(0.827)PT(0.174)PDGS(0.999)ER;AKS(0.968)PT(0.032)PDGS(1)ER ; 145.52 3.79E-06 1010870000 1533250 991990 782180 1176660 1084270 1915070 2046480 1590140 1410180 3036240 TRUE FALSE FALSE 1425777.093 913381.0996 1085061.044 2739323.945 948270.7462 1678808.134 1534429.059 1228099.835 1532415.538 2275945.741 0.626454782 0.401319365 0.476751719 1.203598089 0.416649101 0.737631001 0.674194042 0.539599786 0.673309346 1 21.11803473 -11.80700547 1.502582562 6.904207623 0.638183035 0.198767693 0.217534428 2047779.365 57905.4719 41195865.96 0.062437684 1.56E-12 11.80700547 -6.266024588 AKS(ph)PTPDGSER ddPTM_HeLa_A485_30min_R1 1 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 AKS(0.907)PT(0.093)PDGSER 120.84 0.0016285 0 141080 155790 125230 181050 191850 178070 227390 256150 151810 247910 TRUE FALSE FALSE 172462.7593 174008.2853 171557.7883 190940.3031 172748.7404 187393.4699 178806.2689 193328.8109 182276.8745 186110.5994 0.92666812 0.934972462 0.921805576 1.025950718 0.928204739 1.006893054 0.960752743 1.038784526 0.979400824 1 17.5058007 -4.900953465 0.463714315 1.003459701 0.890554155 0.398498352 0.032366263 2.76242853 0.705260188 0.023570138 0.161331278 1.26E-05 4.900953465 -0.112905545 AKS(ph)PTPESSTIASYVTLR ddPTM_HeLa_A485_30min_R1 3 AKSPTPESSTIASYVTLR 18 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.528)PT(0.455)PES(0.006)S(0.01)T(0.001)IASYVTLR;AKS(0.714)PT(0.286)PESSTIASYVTLR;AKS(0.942)PT(0.055)PES(0.002)STIASYVTLR ;; 180.7 5.02E-18 5828540000 334829 302680 275691 451487 391967 321151 484084 449169 315798 588940 TRUE FALSE FALSE 409310.5559 338075.793 377680.5734 476150.5916 352941.3892 337965.9698 380655.4988 339009.5985 379175.7619 442128.0966 0.925773682 0.764655754 0.854233369 1.076951669 0.79827858 0.764407357 0.860962019 0.766767824 0.857615168 1 18.75410489 AKS(ph)PTPESSTIASYVTLR ddPTM_HeLa_A486_30min_R1 1 AKSPTPESSTIASYVTLR 18 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.631)PT(0.369)PESSTIASYVTLR 210.5 5.63E-26 7849000000 191520 169750 108230 56847 177560 183110 181400 177820 130140 191420 TRUE FALSE FALSE 178095.437 156298.3918 150139.5545 132342.6889 155288.7691 160519.7499 136011.8013 137334.2678 141420.64 143487.1861 1.241194018 1.089284668 1.046362108 0.922331063 1.082248341 1.118704425 0.947902075 0.957118692 0.985597696 1 17.13056238 -4.26692397 1.58542966 1.005595383 1.327647709 0.614832499 0.057109109 0.755393376 1.818127978 0.017296573 0.376538284 5.41E-05 4.26692397 0.322052326 AKS(ph)PTPESSTIASYVTLRK ddPTM_HeLa_A486_30min_R1 1 AKSPTPESSTIASYVTLRK 19 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.751)PT(0.249)PESSTIASYVTLRK 172.42 4.12E-13 2791800000 1928500 1416100 833030 868030 1750400 1440800 2182700 2249900 1177900 2574200 TRUE FALSE FALSE 1793322.109 1303883.079 1155601.525 2020817.708 1530848.51 1263048.745 1636565.374 1737646.885 1280001.32 1929603.565 0.929373339 0.675725886 0.598880281 1.047270924 0.793348716 0.654563853 0.848135546 0.900520147 0.663349376 1 20.87987305 -11.1176643 2.361828209 1.398720353 0.789763222 0.176311114 0.136084029 23712916.02 6615031.244 50705638.32 0.035827937 7.63E-12 11.1176643 -0.608957131 AKS(ph)PTPSPS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 AKSPTPSPSPPR 12 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AKS(0.999)PT(0.004)PS(0.027)PS(0.969)PPR 58.83 0.0042349 0 152290 165990 150890 178690 227330 186920 233900 218580 170990 235550 TRUE FALSE FALSE 186166.3851 185401.0866 206710.4901 188451.3822 204696.227 196706.8422 183925.3542 164972.9123 205306.1246 176831.72 1.052788409 1.048460574 1.168967254 1.065710282 1.157576407 1.112395684 1.040115168 0.932937328 1.161025435 1 17.43201756 -10.22798787 4.848451291 0.999985406 1.080767421 0.114988212 0.068322869 1.10E-05 1.75E-06 0.067435919 0.016352658 5.92E-11 10.22798787 0.080782015 AKS(ph)PVKEEAKS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 AKSPVKEEAKSPEK 14 3 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 2 0 AKS(1)PVKEEAKS(1)PEK;AKS(1)PVKEEAKS(1)PEK ; 86.546 0.00096737 957290000 953310 383310 248170 3121200 598350 515790 1345500 622770 338320 3594700 TRUE FALSE FALSE 1165370.521 428134.7701 339978.4102 3291703.253 538776.1731 542795.9668 1058022.933 470034.681 406217.7207 2698607.446 0.431841438 0.158650259 0.125982907 1.219778467 0.199649702 0.201139283 0.392062556 0.174176752 0.150528644 1 21.3637837 -10.71312738 3.379829045 1.070551717 0.342143234 0.289008907 0.310852325 563923771.9 634049171.8 338918810.5 0.079008559 1.94E-11 10.71312738 -0.728408483 AKS(ph)PVKEEAKS(ph)PEK ddPTM_HeLa_A486_30min_R1 2 AKSPVKEEAKSPEK 14 3 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 2 0 AKS(1)PVKEEAKS(1)PEK;AKS(1)PVKEEAKS(1)PEK ; 83.395 0.0014742 606690000 814410 685666 126264 1266050 289362 1149490 1845670 1250840 470012 3344850 TRUE FALSE FALSE 757324.0646 631331.329 175156.8023 2947428.383 253067.5198 1007677.611 1383863.844 966051.0376 510753.0186 2507277.789 0.302050322 0.251799514 0.069859352 1.175549194 0.10093318 0.401901064 0.55193878 0.385298766 0.203708189 1 21.25769041 -11.13726215 2.266960631 2.248470749 0.390188082 0.277694951 0.298511276 19308857.38 4622215.459 124011223.4 0.076152279 7.29E-12 11.13726215 -1.858282667 AKS(ph)PVKEEVK ddPTM_HeLa_A485_30min_R1 1 AKSPVKEEVK 10 2 P12036 P12036 NEFH Neurofilament heavy polypeptide 1 0 AKS(1)PVKEEVK 94.09 0.0011695 335780000 584530 339780 183140 1303100 460750 484970 874440 619210 370200 1726600 TRUE FALSE FALSE 714556.6819 379514.3153 250891.1071 1374285.053 414876.1122 510362.2793 687608.7505 467347.7766 444495.7443 1296190.396 0.551274477 0.292792106 0.193560381 1.060249372 0.320073435 0.393740211 0.530484374 0.360554883 0.342924732 1 20.30584622 -10.28818316 5.17773349 1.00011351 0.449659314 0.344418036 0.227842896 0.000296141 4.07E-05 0.218830822 0.053063424 5.15E-11 10.28818316 -0.550454196 AKS(ph)PVKEEVK ddPTM_HeLa_A486_30min_R1 2 AKSPVKEEVK 10 2 P12036 P12036 NEFH Neurofilament heavy polypeptide 1 0 AKS(1)PVKEEVK;AKS(1)PVKEEVK ; 96.464 0.0010049 1379020000 1549020 1260040 445300 1146160 945950 2099310 2708500 2145350 1142170 3228700 TRUE FALSE FALSE 1440441.697 1160189.841 617732.0855 2668318.404 827300.1304 1840318.476 2030804.652 1656900.638 1241174.215 2420212.505 0.595171579 0.479375195 0.255238779 1.102514097 0.341829541 0.760395409 0.839101793 0.684609568 0.512836874 1 21.2067023 -14 0.054901088 2.334628256 3.05E-08 0.208010443 0.231665479 753.7869916 3.03619772 143.3347265 27.69048442 1.00E-14 14 -2.334628225 AKS(ph)VDEIAK ddPTM_HeLa_A485_30min_R1 2 AKSVDEIAK 9 1 A6ND36;A6ND36-2 A6ND36 FAM83G Protein FAM83G 1 0 AKS(1)VDEIAK;AKS(1)VDEIAK ; 119.39 0.00023867 1594240000 1230610 849430 570700 1849430 1513540 1367850 2283350 2294560 1144850 3182700 TRUE FALSE FALSE 1504354.949 948763.4494 781825.6788 1950459.678 1362846.643 1439468.511 1795493.619 1731815.562 1374610.894 2389311.463 0.629618604 0.397086552 0.327217983 0.816327092 0.570393046 0.602461643 0.751469052 0.724817835 0.575316745 1 21.1881635 -13.99999997 0.07419034 2.372668641 0.142034268 0.495023021 0.132505522 237.5361737 1.257751018 54.4947351 6.001658785 1.00E-14 13.99999997 -2.230634372 AKS(ph)VDEIAK ddPTM_HeLa_A486_30min_R1 1 AKSVDEIAK 9 1 A6ND36;A6ND36-2 A6ND36 FAM83G Protein FAM83G 1 0 AKS(1)VDEIAK 138.42 7.53E-05 515720000 1196800 1091500 482800 813460 1020900 1638000 2413100 2397300 994770 2606500 TRUE FALSE FALSE 1112910.5 1005005.565 669753.0898 1893775.99 892849.2025 1435920.214 1809316.857 1851487.123 1080997.465 1953815.435 0.569608818 0.514381014 0.342792404 0.969270667 0.456977249 0.734931349 0.926042872 0.947626419 0.553275118 1 20.89786276 -5.884705567 0.620641258 0.869397337 0.473814694 0.326011235 0.19002544 1.08521931 0.903997751 0.135961615 0.226048701 1.30E-06 5.884705567 -0.395582643 AKS(ph)VEDDAEGHLIYHVGDWLQER ddPTM_HeLa_A485_30min_R1 2 AKSVEDDAEGHLIYHVGDWLQER 23 1 B1AVT0;P49760-3;P49760 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 AKS(1)VEDDAEGHLIYHVGDWLQER;AKS(1)VEDDAEGHLIYHVGDWLQER ; 174.14 4.95E-15 394750000 127637 117130 93070 179119 169273 136976 200714 220031 126160 231309 TRUE FALSE FALSE 156029.4103 130827.3346 127500.466 188903.8174 152419.5858 144147.8516 157829.8142 166068.0523 151479.1548 173647.9232 0.898538879 0.753405697 0.734246996 1.087855322 0.877750698 0.830115609 0.908907007 0.956349199 0.872334964 1 17.40580563 -1 0.088046367 1.066191396 0.374763477 0.178057902 0.092013806 286.7515818 1.824421136 1.926686495 23.96818427 0.1 1 -0.691427919 AKSEDS(ph)DVELS(ph)D ddPTM_HeLa_A485_30min_R1 1 AKSEDSDVELSD 12 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 2 0 AKS(0.024)EDS(0.976)DVELS(1)D 148.41 6.27E-07 622070000 1227100 1304800 1058300 2291400 2335700 1771800 2745400 2947100 1568300 3305800 TRUE FALSE FALSE 1500064.162 1457385.01 1449809.21 2416573.38 2103149.507 1864568.708 2158822.862 2224319.104 1883043.425 2481724.899 0.604444176 0.587246802 0.584194167 0.973747486 0.847454731 0.75131966 0.869888062 0.896279481 0.758763965 1 21.24291177 -5.246971198 24.9145716 0.860720919 0.591490187 0.743079921 0.075034004 385.2815699 663463.498 0.019964528 0.034376802 5.66E-06 5.246971198 -0.269230732 AKSEDS(ph)DVELS(ph)D ddPTM_HeLa_A486_30min_R1 2 AKSEDSDVELSD 12 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 2 0 AKS(0.007)EDS(0.993)DVELS(1)D;AKS(0.146)EDS(0.854)DVELS(1)D ; 89.624 0.0091276 1597120000 2330700 2566400 1488660 1681960 2878400 3068100 3908100 3739000 2139700 4023700 TRUE FALSE FALSE 2167329.966 2363029.117 2065109.02 3915687.882 2517364.232 2689589.016 2930252.044 2887711.322 2325170.919 3016139.33 0.718577535 0.783461524 0.684686214 1.298245026 0.834631281 0.891732351 0.971524099 0.957419736 0.770909651 1 21.52427164 AKSELTLTPDPAPPMAHS(ph)PLHR ddPTM_HeLa_A485_30min_R1 2 AKSELTLTPDPAPPMAHSPLHR 22 1 E9PCV4;M0R344;Q9NRA0-4;Q9NRA0-2;Q9NRA0;Q9NRA0-5;Q9NRA0-3 E9PCV4 SPHK2 Sphingosine kinase 2 1 0 AKSELTLTPDPAPPMAHS(1)PLHR;AKSELTLTPDPAPPMAHS(1)PLHR ; 78.3 0.0026477 351950000 273950 405150 317520 251610 424000 392210 431660 519460 296990 370130 TRUE FALSE FALSE 334889.2324 452528.7682 434983.8611 265354.8172 381785.0712 412745.5091 339432.3147 392061.6205 356593.1688 277863.4027 1.205229725 1.628601549 1.565459347 0.954982969 1.37400272 1.485425951 1.221579781 1.410986897 1.283339819 1 18.0840163 -12.76476854 0.231936491 3.81E-10 1.398008993 0.246131687 0.18487746 128.3488888 2.15643766 61.0279488 0.331656613 1.72E-13 12.76476854 1.398008992 AKSPT(ph)PDGS(ph)ER ddPTM_HeLa_A485_30min_R1 1 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 AKS(0.439)PT(0.761)PDGS(0.8)ER 148.57 1.24E-05 2333600000 1113700 1296900 797770 2085100 1446700 1262100 1851700 1964300 1170200 2852000 TRUE FALSE FALSE 1361438.723 1448561.173 1092898.321 2199003.733 1302661.468 1328181.604 1456069.168 1482552.345 1405048.406 2141048.887 0.635874655 0.676566136 0.510449961 1.027068437 0.608422104 0.620341559 0.680072826 0.69244208 0.656243029 1 21.02988631 -10.7767656 2.328783178 1.096472058 0.68052368 0.366573421 0.126720113 9243147.371 5790057.428 5070120.276 0.032022194 1.67E-11 10.7767656 -0.415948378 AKSPT(ph)PDGS(ph)ER ddPTM_HeLa_A486_30min_R1 1 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 AKS(0.458)PT(0.543)PDGS(1)ER 131.35 0.00065049 4494100000 6790800 3788300 3135900 4693300 4062600 7983100 8364900 6330200 5369200 12139000 TRUE FALSE FALSE 6314799.988 3488101.311 4350204.462 10926239.59 3553030.826 6998226.288 6271913.545 4888951.647 5834606.579 9099315.388 0.693986275 0.383336676 0.478080413 1.200776006 0.390472324 0.769093716 0.689273124 0.537287855 0.641213798 1 23.11732657 -11.38525835 1.876145338 2.896104553 0.641143484 0.186495778 0.223907262 8564810.324 809277.5679 68791732.27 0.058369402 4.12E-12 11.38525835 -2.25496107 AKSPT(ph)PESSTIASYVTLR ddPTM_HeLa_A485_30min_R1 1 AKSPTPESSTIASYVTLR 18 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.179)PT(0.82)PES(0.001)STIASYVTLR 228.69 1.02E-34 5063200000 130740 107360 119480 159480 163750 144310 192120 165460 140600 191400 TRUE FALSE FALSE 159822.662 119914.8181 163680.624 168191.9886 147446.475 151865.8485 151071.9925 124880.6756 168817.1303 143687.5025 1.112293409 0.834552874 1.139143079 1.170540135 1.026160748 1.056917588 1.051392709 0.869112995 1.174890839 1 17.13257506 -7.049468982 24.9968655 1.005251768 1.054064111 0.0265083 0.109775421 1529.406045 772809.1107 0.051077816 0.029490727 8.92E-08 7.049468982 0.048812344 AKSPT(ph)PESSTIASYVTLR ddPTM_HeLa_A486_30min_R1 3 AKSPTPESSTIASYVTLR 18 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.198)PT(0.662)PES(0.135)S(0.005)TIASYVTLR;AKS(0.41)PT(0.488)PES(0.1)S(0.003)TIASYVTLR;AKS(0.351)PT(0.648)PES(0.001)STIASYVTLR ;; 199.94 4.32E-25 8532330000 467930 538870 338333 215061 518430 550330 633990 645080 429730 623230 TRUE FALSE FALSE 435130.5234 496167.9787 469344.5985 500672.8766 453403.6752 482435.8799 475358.9963 498209.366 466979.3424 467169.1515 0.931419641 1.062073506 1.004656658 1.071716476 0.970534278 1.032679231 1.017530791 1.066443203 0.999593704 1 18.83358549 -4.247386902 24.59119317 1.02622638 0.93141956 0.439189401 0.031706462 1816.791873 3179236.913 0.007294792 0.152286768 5.66E-05 4.247386902 -0.09480682 AKSPT(ph)PESSTIASYVTLRK ddPTM_HeLa_A485_30min_R1 1 AKSPTPESSTIASYVTLRK 19 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.36)PT(0.64)PESSTIASYVTLRK 165.32 1.97E-12 3217600000 925760 1149500 809920 971900 1438700 1558000 2138600 2775000 1048600 1478200 TRUE FALSE FALSE 1131692.118 1283924.026 1109543.112 1024992.436 1295457.976 1639574.471 1681670.639 2094426.899 1259044.402 1109711.944 1.019807099 1.156988561 0.999847859 0.923656307 1.167382205 1.477477538 1.515411858 1.887360869 1.134568667 1 20.0817538 -6.137772154 3.502137799 1.466189955 1.033342772 0.35718749 0.231963106 0.235578429 5.298043415 0.077538343 0.077863596 7.28E-07 6.137772154 -0.432847183 AKT(ph)PTPEPFDSETR ddPTM_HeLa_A486_30min_R1 1 AKTPTPEPFDSETR 14 1 Q9NSY0;H0YCB1;Q9NSY0-2;Q9NSY0-4 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 AKT(0.633)PT(0.367)PEPFDSETR 114.52 0.00022941 299960000 231950 244250 149550 104100 242330 250350 325720 329710 200330 410630 TRUE FALSE FALSE 215691.5028 224894.7405 207459.7651 242350.0609 211934.7118 219464.3624 244221.4109 254642.2305 217694.7657 307805.5752 0.700739428 0.730638944 0.673996125 0.78734786 0.68853435 0.71299671 0.793427509 0.82728271 0.707247637 1 18.23165984 -14 0.19466559 2.169087452 0.692093843 0.764612229 0.044943651 63.62993295 0.625950386 28.80640254 0.113509839 1.00E-14 14 -1.476993609 AKT(ph)QTPPVS(ph)PAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A485_30min_R1 2 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 3 0 AKT(0.819)QT(0.182)PPVS(1)PAPQPT(0.004)EERLPS(0.531)S(0.464)PVY(0.001)EDAASFK;AKT(0.5)QT(0.5)PPVS(1)PAPQPTEERLPS(0.539)S(0.461)PVYEDAASFK ; 180.25 1.21E-20 3972310000 271234 344220 192146 275184 421850 388130 542580 686590 285310 435280 TRUE FALSE FALSE 331569.0676 384473.5347 263228.8013 290216.6051 379849.1328 408451.8866 426653.3505 518202.726 342569.1 326772.7067 1.014677973 1.176577868 0.805540964 0.888129881 1.16242613 1.249957167 1.305657852 1.585820098 1.048340614 1 18.31792796 -5.971705771 3.718263891 1.275127578 0.975005628 0.331632034 0.174671159 0.241491687 7.211665014 0.057537183 0.063588978 1.07E-06 5.971705771 -0.30012195 AKT(ph)QTPPVS(ph)PAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 3 0 AKT(0.515)QT(0.515)PPVS(0.97)PAPQPT(0.196)EERLPS(0.375)S(0.345)PVY(0.083)EDAAS(0.001)FK 64.302 0.0092574 778290000 268060 173560 119130 103820 228790 200360 301820 298560 114720 320140 TRUE FALSE FALSE 249270.3783 159806.4735 165260.3264 241698.2068 200093.0248 175641.6203 226301.4437 230584.4055 124664.022 239974.8602 1.038735383 0.665930062 0.68865683 1.007181363 0.833808277 0.731916752 0.943021463 0.960869006 0.519487841 1 17.87252375 -5.215596727 24.99966272 0.852436689 0.784589796 0.023176619 0.167118019 1886.032094 1028519 0.044157975 0.076483348 6.09E-06 5.215596727 -0.067846893 AKT(ph)QTPPVS(ph)PAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 2 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.5)QT(0.5)PPVS(0.687)PAPQPT(0.311)EERLPS(0.001)S(0.001)PVYEDAASFK;AKT(0.849)QT(0.151)PPVS(0.996)PAPQPT(0.002)EERLPS(0.001)S(0.001)PVYEDAASFK ; 167.08 1.11E-13 2503690000 187794 235744 148846 210195 254928 285341 470820 567440 200617 309447 TRUE FALSE FALSE 229568.1274 263312.2101 203910.3294 221677.4206 229546.4732 300281.0135 370225.4608 428274.4503 240878.9917 232307.5578 0.988207743 1.133463812 0.877760204 0.954241105 0.988114529 1.292601138 1.593686681 1.843566582 1.036896922 1 17.82567657 -6.380618872 3.520035706 1.439240704 0.987432903 0.352075407 0.240710561 0.236895661 5.383617419 0.088005811 0.076349351 4.16E-07 6.380618872 -0.451807801 AKT(ph)QTPPVSPAPQPTEER ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEER 18 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKT(0.511)QT(0.489)PPVSPAPQPTEER 118.01 5.98E-05 849070000 398720 339690 224860 124350 334030 347720 421410 391930 260060 455810 TRUE FALSE FALSE 370771.787 312771.7273 311931.814 289493.0843 292132.8427 304821.8418 315968.7608 302696.0948 282602.2102 341672.2092 1.085168114 0.915414596 0.912956353 0.847283087 0.855009084 0.892147016 0.924771615 0.885925418 0.827115003 1 18.38225338 -4.134847026 2.030441868 0.886756715 1.192103005 0.605999632 0.045935959 0.717371985 2.412505073 0.011722058 0.453603874 7.33E-05 4.134847026 0.305346291 AKT(ph)QTPPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKT(0.447)QT(0.389)PPVS(0.164)PAPQPTEERLPSSPVYEDAASFK 58.131 0.015866 608130000 152130 194910 109230 138930 236800 239580 408080 483950 152240 237670 TRUE FALSE FALSE 185970.7937 217703.029 149638.7224 146519.3941 213223.3605 252124.0383 320890.3743 365260.5037 182793.1716 178423.243 1.042301387 1.22014949 0.838672809 0.821190063 1.195042512 1.413067233 1.798478544 2.047157632 1.024491924 1 17.44494404 -6.198063913 2.723976145 1.554615847 0.990861636 0.312306386 0.318527498 0.29165832 4.261268944 0.115902991 0.112097659 6.34E-07 6.198063913 -0.56375421 AKT(ph)SPVKSNTPAAHLEIKPDELAK ddPTM_HeLa_A485_30min_R1 2 AKTSPVKSNTPAAHLEIKPDELAK 24 3 B8ZZZ7;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3 B8ZZZ7 SPATS2L SPATS2-like protein 1 0 AKT(0.5)S(0.5)PVKSNTPAAHLEIKPDELAK;AKT(0.5)S(0.5)PVKSNT(0.001)PAAHLEIKPDELAK ; 165.52 2.01E-14 1692520000 924760 660580 261310 1316330 1150870 1360870 2560280 3346600 684250 2122960 TRUE FALSE FALSE 1130469.672 737829.0847 357979.443 1388237.775 1036285.342 1432123.049 2013255.262 2525841.103 821572.6987 1593745.142 0.709316466 0.462952994 0.224615237 0.871053808 0.650220236 0.89858975 1.263222839 1.584846307 0.515498167 1 20.60398951 -6.156227293 1.434379498 1.130865599 0.513245832 0.396611942 0.294597902 0.384809828 1.599105544 0.128959263 0.12698455 6.98E-07 6.156227293 -0.617619767 AKTQT(ph)PPVS(ph)PAPQPTEER ddPTM_HeLa_A485_30min_R1 3 AKTQTPPVSPAPQPTEER 18 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.143)QT(0.857)PPVS(0.999)PAPQPT(0.001)EER;AKT(0.111)QT(0.889)PPVS(1)PAPQPTEER;AKT(0.094)QT(0.906)PPVS(1)PAPQPTEER ;; 122.6 1.43E-05 6311800000 4103950 4628360 3505890 4528670 5122920 4431910 5564660 4927050 3924480 6086190 TRUE FALSE FALSE 5016859.519 5169606.441 4802864.603 4776059.775 4612864.097 4663957.955 4375724.932 3718683.262 4712087.139 4569014.841 1.098017777 1.131448818 1.05118166 1.045315006 1.009597092 1.020779778 0.957695495 0.813891701 1.031313599 1 22.1234517 -5.798479413 0.787939653 0.939359344 1.114433614 0.503460001 0.057658744 0.530311647 0.717985257 0.032719842 0.053643258 1.59E-06 5.798479413 0.17507427 AKTQT(ph)PPVS(ph)PAPQPTEER ddPTM_HeLa_A486_30min_R1 4 AKTQTPPVSPAPQPTEER 18 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.17)QT(0.83)PPVS(1)PAPQPTEER;AKT(0.181)QT(0.819)PPVS(1)PAPQPTEER;AKT(0.444)QT(0.556)PPVS(1)PAPQPTEER;AKT(0.165)QT(0.835)PPVS(1)PAPQPTEER ;;; 118.59 4.00E-05 8868700000 6799800 5654250 4205810 2605620 6160730 6128020 6934350 7020440 4532280 8130890 TRUE FALSE FALSE 6323169.134 5206186.638 5834412.267 6066015.041 5387993.797 5372007.198 5199302.286 5422039.067 4925141.68 6094862.221 1.037458913 0.854192671 0.957267294 0.995266968 0.884022247 0.881399284 0.853063137 0.889608144 0.808080889 1 22.53916218 -5.849391806 8.168994549 0.878188516 0.953005666 0.247350149 0.062643488 0.352721933 28.81266993 0.018531648 0.021060189 1.41E-06 5.849391806 0.07481715 AKTQT(ph)PPVS(ph)PAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 3 0 AKT(0.123)QT(0.878)PPVS(0.999)PAPQPT(0.007)EERLPS(0.524)S(0.467)PVY(0.002)EDAASFK 139.2 6.79E-07 685990000 132610 106780 70193 68723 128160 118500 167730 156940 75615 188730 TRUE FALSE FALSE 123314.7238 98318.36391 97373.60943 159990.6171 112084.9778 103880.6748 125762.1799 121208.188 82169.36908 141470.7796 0.871662149 0.694972942 0.688294853 1.130909277 0.792283594 0.734290679 0.888962232 0.856771896 0.580822198 1 17.11014457 -11.39384072 2.44230039 2.750350302 0.808923382 0.145211563 0.142028092 10013716.53 2203242.592 97312959.76 0.03633707 4.04E-12 11.39384072 -1.94142692 AKTQT(ph)PPVS(ph)PAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.128)QT(0.872)PPVS(1)PAPQPTEERLPSSPVYEDAASFK 125.07 1.83E-05 872610000 41865 53078 32954 48144 67358 68662 97248 116550 40439 68587 TRUE FALSE FALSE 51177.72482 59285.01038 45145.05593 50773.98481 60651.60101 72257.03615 76470.17036 87965.92976 48554.73637 51489.52315 0.993944432 1.151399484 0.876781395 0.986103225 1.177940624 1.403334732 1.485159809 1.708423857 0.943002254 1 15.65199129 -6.00423134 3.228074594 1.361695754 1.005118477 0.284795651 0.219756218 0.275919875 5.969624765 0.072720442 0.078640232 9.90E-07 6.00423134 -0.356577276 AKTQT(ph)PPVS(ph)PAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A486_30min_R1 2 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.186)QT(0.832)PPVS(0.982)PAPQPTEERLPSSPVYEDAASFK;AKT(0.518)QT(0.574)PPVS(0.907)PAPQPTEERLPSSPVYEDAASFK ; 89.559 0.0012972 1438640000 104742 66798 43185.3 44934.6 80194 87319 140293 109487 47356 123422 TRUE FALSE FALSE 97400.12669 61504.68321 59907.8047 104610.0197 70135.32074 76546.46957 105190.2075 84559.20018 51460.85621 92516.32786 1.052788507 0.664798146 0.647537641 1.13071954 0.758085868 0.827383353 1.136990734 0.91399218 0.556235395 1 16.49742038 -5.221189603 24.99470066 0.900278383 0.776017195 0.068792669 0.192001415 1461.482845 907563.8557 0.051929702 0.08994359 6.01E-06 5.221189603 -0.124261188 AKTQT(ph)PPVSPAPQPTEER ddPTM_HeLa_A485_30min_R1 4 AKTQTPPVSPAPQPTEER 18 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKT(0.047)QT(0.953)PPVSPAPQPTEER;AKT(0.035)QT(0.965)PPVSPAPQPTEER;AKT(0.008)QT(0.992)PPVSPAPQPTEER;AKT(0.32)QT(0.68)PPVSPAPQPTEER ;;; 121.62 2.81E-05 8641930000 6799420 7257240 5941100 7701460 8368690 7228850 9371140 8352320 7057180 10558970 TRUE FALSE FALSE 8311927.521 8105911.088 8138960.12 8122171.259 7535473.839 7607341.408 7368919.384 6303900.424 8473491.294 7926813.102 1.048583764 1.022593946 1.026763217 1.024645233 0.950630946 0.959697335 0.929619418 0.795262906 1.068965697 1 22.91830953 -5.799383386 2.345797641 0.936635578 1.0327062 0.251325257 0.065258028 0.367703929 4.147546133 0.021313979 0.026491509 1.59E-06 5.799383386 0.096070622 AKTQT(ph)PPVSPAPQPTEER ddPTM_HeLa_A486_30min_R1 3 AKTQTPPVSPAPQPTEER 18 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKT(0.061)QT(0.939)PPVSPAPQPTEER;AKT(0.045)QT(0.955)PPVSPAPQPTEER;AKT(0.027)QT(0.973)PPVSPAPQPTEER ;; 133.47 7.24E-06 7769900000 6055510 5558570 3748910 2117950 5659290 5302800 6542080 6283830 4160140 6871150 TRUE FALSE FALSE 5631050.02 5118088.669 5200588.351 4930694.635 4949449.077 4648594.451 4905182.389 4853139.084 4520744.285 5150569.316 1.093286911 0.993693775 1.00971136 0.957310606 0.960951843 0.902539926 0.95235732 0.942252941 0.877717395 1 22.29630048 -2.763939594 0.533235833 0.931824358 1.78636943 0.659833785 0.03331032 10.24307519 0.635112428 0.016585288 7.721485036 0.001722108 2.763939594 0.854545071 AKTQT(ph)PPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A485_30min_R1 2 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.237)QT(0.763)PPVSPAPQPTEERLPS(0.539)S(0.461)PVYEDAASFK;AKT(0.208)QT(0.792)PPVSPAPQPTEERLPS(0.55)S(0.45)PVYEDAASFK ; 282.6 3.76E-77 13705700000 740490 851750 517420 727580 1127420 1136570 1757120 2282750 874720 1199440 TRUE FALSE FALSE 905209.4458 951354.7533 708835.1896 767325.8531 1015170.106 1196079.048 1381696.958 1722901.983 1050268.281 900441.6821 1.005294917 1.056542331 0.787208326 0.852166074 1.127413498 1.328324834 1.534465791 1.913396523 1.16639234 1 19.78027332 -6.204502379 2.232826963 1.472548374 0.928139573 0.44138236 0.23967294 0.255423891 2.500692674 0.090430075 0.086590424 6.24E-07 6.204502379 -0.544408801 AKTQT(ph)PPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 AKT(0.164)QT(0.836)PPVSPAPQPT(0.001)EERLPS(0.538)S(0.461)PVYEDAASFK 237.54 1.11E-49 6727100000 1428300 869960 518690 591660 1106600 1005800 1524200 1589000 642460 1662900 TRUE FALSE FALSE 1328183.546 801021.2013 719540.659 1377414.381 967799.9094 881714.6222 1142829.039 1227219.388 698148.9501 1246499.016 1.065531162 0.642616794 0.577249279 1.105026448 0.776414499 0.707352842 0.916831079 0.984532977 0.560087847 1 20.24945031 -10.95878866 2.509687532 1.14561891 0.815204492 0.080768927 0.187160534 51700620.91 23210072 43828012.5 0.045111872 1.10E-11 10.95878866 -0.330414419 AKTQT(ph)PPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKT(0.008)QT(0.991)PPVS(0.001)PAPQPTEERLPSSPVYEDAASFK 273.13 1.70E-77 3510300000 299660 351650 266590 264920 434410 426360 717870 868980 311860 453570 TRUE FALSE FALSE 366318.3332 392772.4086 365212.7347 279391.9088 391158.6151 448683.5503 564491.21 655861.2925 374447.4415 340503.3463 1.075814194 1.153505282 1.072567241 0.820526176 1.148765847 1.317706728 1.657813987 1.926152267 1.099687993 1 18.37730945 -6.341744597 2.833739352 1.494984181 1.041349619 0.292106637 0.262557962 0.289721066 4.551495727 0.098862158 0.087067337 4.55E-07 6.341744597 -0.453634562 AKTQT(ph)PPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKT(0.274)QT(0.721)PPVS(0.006)PAPQPTEERLPSSPVYEDAASFK 171.16 1.35E-14 2925500000 344570 212760 124210 149450 273940 262320 362430 369240 158810 385910 TRUE FALSE FALSE 320417.4224 195900.1227 172307.4385 347927.1528 239579.8908 229957.6255 271746.1806 285172.1125 172575.7787 289275.6241 1.107654415 0.67720923 0.595651427 1.202753097 0.828206288 0.794942976 0.939402279 0.985814527 0.596579056 1 18.14208523 -11.39481405 2.239284162 2.079298962 0.859077059 0.045284514 0.194642961 15824760.21 1587440.676 86761377.88 0.049743912 4.03E-12 11.39481405 -1.220221904 AKTQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A485_30min_R1 3 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKTQTPPVSPAPQPTEERLPS(0.5)S(0.5)PVYEDAASFK;AKTQTPPVSPAPQPT(0.011)EERLPS(0.488)S(0.488)PVY(0.013)EDAASFK;AKTQTPPVSPAPQPT(0.061)EERLPS(0.323)S(0.323)PVY(0.291)EDAAS(0.001)FK ;; 187.96 2.08E-21 7770590000 346234 695150 337363 229306 555360 774700 968390 1546550 383690 356113 TRUE FALSE FALSE 423252.5588 776441.7455 462167.6125 241832.4061 500066.4084 815262.0941 761485.5655 1167256.188 460693.0636 267340.5829 1.583196065 2.904316798 1.72875965 0.904585468 1.870521875 3.049526134 2.848372504 4.366176564 1.723244031 1 18.02831933 -6.247903751 18.8293024 2.823531209 1.806208228 0.129096074 0.951103499 48.18869867 67033.07343 0.30940579 0.306048782 5.65E-07 6.247903751 -1.017322981 AKTQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKTQTPPVSPAPQPTEERLPS(0.5)S(0.5)PVYEDAASFK 169.01 7.97E-15 1650500000 1345200 676940 478360 411830 983730 541050 922810 1068100 384730 1127100 TRUE FALSE FALSE 1250908.427 623296.809 663593.8029 958761.0527 860341.4105 474300.752 691913.1775 824916.9465 418078.7062 844866.8238 1.480598352 0.737745632 0.7854419 1.134807316 1.018316007 0.561391143 0.818961235 0.976386956 0.49484569 1 19.68836442 -6.216936844 24.31972668 0.771881363 1.007151368 0.224185384 0.240715469 570.0760385 311534.5775 0.077976326 0.077975894 6.07E-07 6.216936844 0.235270005 AKTQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKTQTPPVSPAPQPTEERLPS(0.188)S(0.812)PVYEDAASFK 198.1 2.56E-29 371110000 135740 277470 131680 72180 242440 293410 347930 616230 177510 145870 TRUE FALSE FALSE 165934.8947 309917.7028 180393.9117 76123.01063 218301.8223 308772.4939 273591.9132 465098.6263 213134.6288 109507.2935 1.515286237 2.830110149 1.647323259 0.69514101 1.993491167 2.819652317 2.498389873 4.247193144 1.946305327 1 16.74066744 -6.150232287 4.685086538 2.702306134 1.711450342 0.138053118 0.908790256 0.374028666 12.9757182 0.302525729 0.303002119 7.08E-07 6.150232287 -0.990855791 AKTQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 AKTQTPPVSPAPQPTEERLPS(0.067)S(0.933)PVYEDAASFK 306.35 7.84E-94 1566100000 976680 550320 364110 313410 738760 468650 778280 837780 285240 965860 TRUE FALSE FALSE 908219.7756 506710.639 505103.1432 729634.3189 646097.8321 410832.7279 583546.1122 647035.7826 309964.8329 724002.3693 1.254443099 0.699874283 0.697653992 1.00777891 0.8923974 0.567446662 0.80600028 0.893692908 0.428126821 1 19.46563489 -6.106560453 24.99999003 0.735849916 0.892356879 0.139628543 0.210250206 68.68058494 16077.97467 0.067657578 0.067657592 7.82E-07 6.106560453 0.156506963 AKVDEFPLCGHMVSDEYEQLSSEALEAAR ddPTM_HeLa_A485_30min_R1 1 AKVDEFPLCGHMVSDEYEQLSSEALEAAR 29 1 X1WI28;P27635;B8A6G2;A6QRI9 X1WI28 RPL10 60S ribosomal protein L10 0 0 117.34 0.00033352 30305000 11605 11297 10965 11752 18351 13702 19715 20742 11691 18679 FALSE FALSE TRUE 14186.49221 12618.08588 15021.40979 12393.982 16523.91001 14419.41553 15502.72919 15654.99198 14037.27646 14022.66906 1.011682737 0.899834819 1.071223297 0.883853277 1.178371245 1.028293221 1.105547676 1.116406007 1.001041699 1 13.77547336 -5.756262557 24.99983058 1.076961321 0.969345769 0.339608427 0.071431566 139.4647849 673496.2886 0.019870604 0.024870012 1.75E-06 5.756262557 -0.107615552 AKVEFNIR ddPTM_HeLa_A485_30min_R1 2 AKVEFNIR 8 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ; ; 133.13 0.00060631 179296000 335010 442410 387400 348500 526920 428080 512490 575360 373960 492380 FALSE FALSE TRUE 409531.8187 494146.001 530715.3811 367537.6726 474457.9947 450493.6069 402992.3248 434252.0579 449010.3418 369638.7276 1.107924544 1.336835034 1.435767796 0.994315923 1.2835722 1.218740281 1.090232962 1.1748013 1.214727539 1 18.49575639 -14 0.111953619 0.308298858 1.327863234 0.228073088 0.118945832 240.982756 1.782220872 37.86474889 1.425410642 1.00E-14 14 1.019564376 AKVEFNIR ddPTM_HeLa_A486_30min_R1 2 AKVEFNIR 8 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ; ; 138.98 0.00026947 120585000 330110 359920 302120 120806 401250 325930 370210 377260 320910 341850 FALSE FALSE TRUE 306970.9937 331398.6284 419108.9551 281242.4732 350921.4835 285720.0704 277579.5423 291366.1335 348726.7372 256248.5349 1.197942434 1.293270334 1.635556493 1.097537878 1.369457521 1.115011528 1.083243432 1.137045071 1.360892609 1 17.96718423 -5.996162949 1.56390733 1.147155313 1.342830347 0.219931896 0.157975661 0.603968671 3.013669706 0.062611443 0.069853251 1.01E-06 5.996162949 0.195675034 AKVVS(ph)QSQPGS(ph)R ddPTM_HeLa_A486_30min_R1 1 AKVVSQSQPGSR 12 1 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 2 0 AKVVS(0.56)QS(0.44)QPGS(1)R 58.246 0.037476 516660000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 AKVVSQS(ph)QPGS(ph)R ddPTM_HeLa_A485_30min_R1 5 AKVVSQSQPGSR 12 1 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 2 0 AKVVS(0.075)QS(0.925)QPGS(1)R;AKVVS(0.027)QS(0.973)QPGS(1)R;AKVVS(0.076)QS(0.924)QPGS(1)R;AKVVS(0.042)QS(0.958)QPGS(1)R;AKVVS(0.113)QS(0.887)QPGS(1)R ;;;; 101.05 0.0010628 4167827000 4137681 6613090 4331710 2948461 6385430 6668840 8497930 11672570 4306081 4212947 TRUE FALSE FALSE 5058093.864 7386433.349 5934189.786 3109527.959 5749674.169 7018010.15 6682277.834 8809853.906 5170271.959 3162736.846 1.599277496 2.335456191 1.876283129 0.983176315 1.817942639 2.218967461 2.112814995 2.785515942 1.634746174 1 21.59274209 -6.015457361 23.97636198 2.06618757 1.712215011 0.025378447 0.531549334 1081.86135 1678107.991 0.171830557 0.177392211 9.65E-07 6.015457361 -0.353972559 AKVVSQS(ph)QPGS(ph)R ddPTM_HeLa_A486_30min_R1 4 AKVVSQSQPGSR 12 1 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 2 0 AKVVS(0.066)QS(0.934)QPGS(1)R;AKVVS(0.03)QS(0.97)QPGS(1)R;AKVVS(0.102)QS(0.898)QPGS(1)R;AKVVS(0.164)QS(0.836)QPGS(1)R ;;; 131.86 0.00010356 2421202000 3831990 3256660 2429703 1392294 4003660 2535000 4000640 4030120 1980588 3712860 TRUE FALSE FALSE 3563387.289 2998590.401 3370549.071 3241330.795 3501483.63 2222257.474 2999637.558 3112549.653 2152266.963 2783135.689 1.280349824 1.077414376 1.211061712 1.164632686 1.258107409 0.798472558 1.077790626 1.118360727 0.773324481 1 21.40827982 -6.244026937 24.98719834 0.968749772 1.190433717 0.53480852 0.113562556 710.5569288 1019663.642 0.036624779 0.036544625 5.70E-07 6.244026937 0.221683944 AKVVSQSQPGS(ph)R ddPTM_HeLa_A486_30min_R1 1 AKVVSQSQPGSR 12 1 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 AKVVSQSQPGS(1)R 139 3.18E-06 416400000 361270 245450 200930 90955 372020 179730 250870 286660 159430 358230 TRUE FALSE FALSE 335946.8386 225999.6481 278735.4771 211747.8366 325357.7827 157556.74 188099.6726 221393.7757 173249.5208 268526.8763 1.251073424 0.841627666 1.038017054 0.788553606 1.211639547 0.586744769 0.700487322 0.824475296 0.64518503 1 18.03470697 -6.26910281 24.99935153 0.737227496 1.003385125 0.391894534 0.169518482 623.3347771 2033413.263 0.055804141 0.050110328 5.38E-07 6.26910281 0.266157628 AKYPS(ph)LGQKPGGSDFLMK ddPTM_HeLa_A486_30min_R1 2 AKYPSLGQKPGGSDFLMK 18 2 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-8;O43768-7 O43768-2 ENSA Alpha-endosulfine 1 0 AKYPS(1)LGQKPGGSDFLMK;AKYPS(1)LGQKPGGSDFLMK ; 149.07 1.63E-08 649770000 687790 555190 223900 308720 502770 808380 952420 1062920 483730 983390 TRUE FALSE FALSE 639579.4728 511194.7224 310600.0762 718715.7618 439707.8985 708650.2946 714114.4423 820916.3194 525660.1059 737142.7432 0.867646706 0.69348132 0.421356758 0.975002153 0.596503055 0.961347447 0.968760052 1.113646342 0.713104905 1 19.49158449 -6.278506486 23.94480803 0.959561459 0.708433906 0.341919835 0.166666975 535.0963303 750726.4906 0.057122982 0.050522727 5.27E-07 6.278506486 -0.251127553 AKYQYGGLNSGRPVT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 AKYQYGGLNSGRPVTPPR 18 2 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 0 AKYQYGGLNSGRPVT(1)PPR 87.772 0.00084549 678720000 339540 447090 426030 301110 496980 556180 541640 579320 398140 452780 TRUE FALSE FALSE 415069.5016 499373.2863 583636.2256 317558.8768 447498.9262 585300.7248 425914.1892 437240.8617 478043.046 339910.2788 1.221114887 1.469132643 1.717030234 0.93424323 1.316520724 1.721927112 1.253019446 1.286341982 1.406380083 1 18.37479446 -12.04601176 0.399279317 0.000583773 1.382156716 0.198903825 0.221767316 219.3758239 6.92806264 185.3294682 0.143582243 8.99E-13 12.04601176 1.381572944 AKYQYGGLNSGRPVT(ph)PPR ddPTM_HeLa_A486_30min_R1 2 AKYQYGGLNSGRPVTPPR 18 2 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 0 AKYQYGGLNSGRPVT(1)PPR;AKYQYGGLNSGRPVT(1)PPR ; 138.66 2.12E-06 1720800000 1132120 1200830 1006920 390750 1278820 1167930 1269810 1304810 1003990 1525010 TRUE FALSE FALSE 1052764.234 1105671.857 1396826.39 909685.7474 1118418.471 1023842.671 952090.1073 1007733.247 1091016.662 1143137.57 0.92094273 0.967225544 1.221923264 0.795779766 0.978376095 0.89564257 0.832874478 0.881550282 0.954405393 1 20.1245676 -5.290078257 24.99988784 0.900180395 1.029750166 0.290315866 0.09353879 874.7144035 763567.2074 0.025987923 0.03855375 5.13E-06 5.290078257 0.129569771 ALAAGADS(ph)PK ddPTM_HeLa_A486_30min_R1 2 ALAAGADSPK 10 0 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 ALAAGADS(1)PK;ALAAGADS(1)PK ; 117.21 0.00040356 385940000 1174310 1084480 511280 744810 785360 1118480 1427180 1276160 934720 2256100 TRUE FALSE FALSE 1091996.933 998541.8552 709261.3086 1733955.321 686852.8256 980493.3095 1070084.469 985606.2264 1015742.282 1691157.875 0.645709634 0.590448633 0.419393907 1.025306594 0.406143528 0.579776332 0.632752556 0.582799655 0.600619432 1 20.68957992 -10.7332796 2.45690431 1.08653197 0.60839623 0.350849327 0.159463064 15073060.37 10880522.49 7962279.759 0.04140053 1.85E-11 10.7332796 -0.47813574 ALAAGADS(ph)PKTEEARPSPAPGPGTPTGTPTR ddPTM_HeLa_A485_30min_R1 3 ALAAGADSPKTEEARPSPAPGPGTPTGTPTR 31 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 ALAAGADS(0.998)PKT(0.002)EEARPSPAPGPGTPTGTPTR;ALAAGADS(0.997)PKT(0.003)EEARPSPAPGPGTPTGTPTR;ALAAGADS(0.996)PKT(0.004)EEARPSPAPGPGTPTGTPTR ;; 184.49 2.92E-21 1346860000 129838 128080 121426 272140 286284 196836 323270 365820 200086 456500 TRUE FALSE FALSE 158720.0152 143057.8419 166346.5304 287006.3191 257780.5598 207142.0286 254200.7236 276102.0714 240241.4249 342702.9513 0.463141664 0.417439772 0.485395675 0.837478399 0.752198249 0.60443608 0.741752362 0.805660034 0.701019422 1 18.38659909 -4.289223136 0.200333328 0.966407884 3.03E-29 0.672589079 0.101069816 9.709109481 0.371601349 0.249075145 2.388824066 5.14E-05 4.289223136 -0.966407884 ALAAGADS(ph)PKTEEARPSPAPGPGTPTGTPTR ddPTM_HeLa_A486_30min_R1 2 ALAAGADSPKTEEARPSPAPGPGTPTGTPTR 31 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 ALAAGADS(1)PKTEEARPSPAPGPGTPTGTPTR;ALAAGADS(0.999)PKT(0.001)EEARPSPAPGPGTPTGTPTR ; 214.43 1.66E-30 1410920000 260393 235391 191607 270651 449530 345470 552100 531070 207908 508870 TRUE FALSE FALSE 242140.7954 216737.7599 265802.3618 630089.2059 393145.7557 302849.4239 413958.7405 410156.9542 225929.6328 381445.6398 0.634797649 0.568200911 0.696828943 1.651845349 1.030673089 0.793951725 1.085236525 1.075269741 0.592298376 1 18.54111795 -5.023705023 24.9829551 1.039293463 0.609252995 0.346535221 0.25349125 788.2355533 830730.0212 0.06986952 0.121974596 9.47E-06 5.023705023 -0.430040468 ALADDDFLTVTGK(ac)TVR ddPTM_HeLa_A485_30min_R1 1 ALADDDFLTVTGKTVR 16 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 1 ALADDDFLTVTGK(1)TVR 119.52 0.00016732 41135000 68406 148340 181180 18075 164110 119000 80028 119880 128490 35936 FALSE TRUE FALSE 83622.6787 165687.0726 248206.0215 19062.39148 147770.6322 125230.656 62929.36403 90479.24204 154276.7644 26977.81655 3.099682976 6.141604243 9.200374724 0.706595044 5.47748673 4.641986343 2.3326337 3.353838583 5.718652735 1 14.71948597 -5.264621002 24.96891816 3.520813645 6.146658881 0.271829651 2.103315284 386.1342206 3030332.615 0.579057293 0.901019475 5.44E-06 5.264621002 2.625845235 ALADDDFLTVTGK(ac)TVR ddPTM_HeLa_A486_30min_R1 1 ALADDDFLTVTGKTVR 16 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 1 ALADDDFLTVTGK(1)TVR 191.06 3.06E-13 33672000 42615 55121 69749 8569.1 84368 40746 36666 49621 50318 29673 FALSE TRUE FALSE 39627.90856 50753.01121 96757.68074 19949.29786 73785.77874 35719.17279 27491.77899 38323.38152 54679.60475 22242.68766 1.781615116 2.281784107 4.350089441 0.896892415 3.317304989 1.605883845 1.235991774 1.722965412 2.458318239 1 14.4410435 -6.308347872 24.17925192 1.626776497 2.522879289 0.200052193 0.920214875 495.0545319 255176.9296 0.316233464 0.278892698 4.92E-07 6.308347872 0.896102792 ALAEEAS(ph)EEELPS(ph)DVDLNDPYFAEEVK ddPTM_HeLa_A485_30min_R1 1 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 2 0 ALAEEAS(1)EEELPS(1)DVDLNDPYFAEEVK 104.9 0.00051841 38454000 40195 37459 25291 49910 46962 38885 59145 53037 36929 68356 TRUE FALSE FALSE 49136.23908 41839.5042 34647.19335 52636.45692 42286.29839 40920.95847 46508.18758 40029.59259 44340.31157 51316.1072 0.957520782 0.81532888 0.675171895 1.025729733 0.824035584 0.797429125 0.906307788 0.780059026 0.86406226 1 15.64712411 -8.038178425 22.2142026 1.000000002 0.844777276 0.193353799 0.092592982 2552.406209 1485123.277 0.086829767 0.022419349 9.16E-09 8.038178425 -0.155222727 ALAEEAS(ph)EEELPS(ph)DVDLNDPYFAEEVK ddPTM_HeLa_A486_30min_R1 2 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 2 0 ALAEEAS(1)EEELPS(1)DVDLNDPYFAEEVK;ALAEEAS(1)EEELPS(1)DVDLNDPYFAEEVK ; 129.46 6.32E-06 159729000 121295 125578 81722 78965 137630 150722 171927 189706 110095 180999 TRUE FALSE FALSE 112792.8469 115626.7419 113366.947 183834.5107 120367.1621 132127.4521 128909.0461 146514.0851 119638.1232 135675.6723 0.831341721 0.852228996 0.835573136 1.354955591 0.887168348 0.973847779 0.950126459 1.079884718 0.881794954 1 17.04980253 ALAEEAS(ph)EEELPSDVDLNDPYFAEEVK ddPTM_HeLa_A486_30min_R1 1 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 ALAEEAS(1)EEELPSDVDLNDPYFAEEVK 113.54 0.00021157 33137000 37795 39566 24975 17844 43824 47546 57124 55409 33587 59319 TRUE FALSE FALSE 35145.76567 36430.64606 34645.98885 41541.73379 38327.18528 41680.25793 42830.971 42793.58027 36498.3482 44465.1363 0.790411738 0.819308094 0.779171993 0.934254053 0.861960369 0.937369395 0.963248391 0.962407491 0.820830683 1 15.44038699 -5.263869399 24.99087673 0.923549869 0.798598353 0.589581429 0.049450851 149.8741855 1541345.136 0.013531448 0.021168223 5.45E-06 5.263869399 -0.124951516 ALAGVVLPSQGPGGASELSSAHQLQQIAAK(ac)QK ddPTM_HeLa_A486_30min_R1 1 ALAGVVLPSQGPGGASELSSAHQLQQIAAKQK 32 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 0 1 ALAGVVLPSQGPGGASELSSAHQLQQIAAK(1)QK 201.08 7.79E-48 39565000 33226 38332 35507 1393.7 52343 36879 39356 39892 39941 22919 FALSE TRUE FALSE 30897.02898 35294.43272 49256.26131 3244.604034 45777.65286 32329.24394 29508.71253 30809.46244 43403.11804 17179.93322 1.798437082 2.054398714 2.867081069 0.188860107 2.664600163 1.881802654 1.717626731 1.793340058 2.52638456 1 14.06843681 -10.29070388 4.874449277 0.99967548 1.930744203 0.140241044 0.700264863 0.002349808 0.000341927 0.644894157 0.156357391 5.12E-11 10.29070388 0.931068724 ALAGVVLPSQGPGGASELSSAHQLQQIAAK(ac)QKR ddPTM_HeLa_A485_30min_R1 1 ALAGVVLPSQGPGGASELSSAHQLQQIAAKQKR 33 2 Q92585 Q92585 MAML1 Mastermind-like protein 1 0 1 ALAGVVLPSQGPGGASELSSAHQLQQIAAK(0.5)QK(0.5)R 71.118 0.0017017 10038000 3524 6121 7196.5 5058.1 10910 7407.5 10212 16119 8408.6 10465 FALSE TRUE FALSE 4307.901642 6836.797704 9858.784821 5334.411195 9823.762093 7795.345246 8030.122776 12165.78998 10096.12889 7856.268094 0.548339439 0.870234776 1.254894144 0.679000657 1.250436209 0.99224532 1.022129423 1.548545675 1.285104934 1 12.93962845 -3.818084057 0.441729867 1.228729599 2.81E-15 0.389213814 0.222971129 8.110013287 0.919912924 0.160205305 5.659749991 0.000152025 3.818084057 -1.228729599 ALALDLGS(ph)PAALR ddPTM_HeLa_A485_30min_R1 2 ALALDLGSPAALR 13 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 ALALDLGS(1)PAALR;ALALDLGS(1)PAALR ; 193.16 1.05E-17 74372000 121130 153276 181232 123830 180797 144236 158581 158842 136054 177195 TRUE FALSE FALSE 148074.9506 171200.2949 248277.2585 130594.5193 162796.2159 151787.9739 124698.8739 119885.7504 163358.7898 133023.5475 1.113148411 1.286992401 1.866415857 0.981739863 1.223815023 1.141060938 0.937419548 0.901237057 1.228044154 1 17.02132213 ALALDLGS(ph)PAALR ddPTM_HeLa_A486_30min_R1 2 ALALDLGSPAALR 13 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 ALALDLGS(1)PAALR;ALALDLGS(1)PAALR ; 196.33 1.68E-18 51912000 119679 142158 122616 48584 167498 130071 141051 142121 120145 146631 TRUE FALSE FALSE 111290.1201 130892.8823 170096.199 113106.0073 146488.839 114024.1625 105758.5479 109763.1508 130559.2653 109913.6432 1.012523258 1.190870201 1.547543999 1.029044293 1.332763019 1.037397717 0.962196729 0.998630812 1.187834936 1 16.74601095 -6.286500013 21.94774947 1.032437838 1.228094004 0.26972127 0.152244165 225.5172985 197502.9555 0.053525434 0.047242617 5.17E-07 6.286500013 0.195656166 ALAMPGRPES(ph)PPVFR ddPTM_HeLa_A485_30min_R1 14 ALAMPGRPESPPVFR 15 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR ;;;;;;;;;;;;; 190.8 1.81E-18 66204780000 4636407 6475220 6599140 4699330 7050790 6006360 6908380 7572550 5765890 6356330 TRUE FALSE FALSE 5667759.742 7232440.652 9040436.499 4956042.499 6348788.591 6320843.722 5432348.177 5715370.239 6923051.235 4771813.911 1.187757915 1.515658571 1.894549257 1.038607664 1.330476986 1.32462075 1.138424146 1.197735357 1.450821714 1 22.18610635 -5.284330737 24.97932783 1.226388224 1.53095571 0.340655305 0.203996437 899.3026834 981328.0256 0.057173587 0.08486879 5.20E-06 5.284330737 0.304567486 ALAMPGRPES(ph)PPVFR ddPTM_HeLa_A486_30min_R1 18 ALAMPGRPESPPVFR 15 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR ;;;;;;;;;;;;;;;;; 189.84 2.09E-18 54584360000 6917408 7832465 7124182 2488363 9245134 6950487 7940222 8212255 6315289 7835950 TRUE FALSE FALSE 6432533.421 7211791.948 9882856.063 5793034.819 8085523.086 6093006.581 5953494.472 6342503.809 6862703.335 5873777.117 1.095127257 1.227794621 1.682538487 0.986253769 1.376545777 1.037323422 1.013571737 1.079799877 1.168362912 1 22.48585709 -6.274558553 23.67950496 1.061909065 1.2778537 0.267424208 0.176878914 550.0080327 992735.4004 0.061712934 0.054795417 5.31E-07 6.274558553 0.215944635 ALANSLACQGK ddPTM_HeLa_A485_30min_R1 2 ALANSLACQGK 11 0 P04075-2;P04075;J3KPS3;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 196.27 1.24E-13 159415000 131640 144192 140599 148468 195364 180511 207857 217656 138957 217979 FALSE FALSE TRUE 160922.8638 161054.0001 192612.4209 156578.4309 175912.8742 189962.2768 163446.6539 164275.5247 166844.3953 163640.8469 0.983390559 0.984191925 1.177043657 0.956841974 1.074993668 1.160848776 0.998813298 1.00387848 1.019576704 1 17.32017338 ALANSLACQGK ddPTM_HeLa_A486_30min_R1 2 ALANSLACQGK 11 0 P04075-2;P04075;J3KPS3;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 161.17 1.95E-05 48577000 44003 37435 35005 11960.7 42411 33201 44638 45610 32631 42642 FALSE FALSE TRUE 40918.61693 34468.51426 48559.87347 27845.11406 37091.41691 29104.99818 33469.10027 35225.59866 35459.48135 31964.16565 1.28014031 1.078348631 1.519197279 0.871135332 1.160406229 0.910550849 1.04708193 1.102034042 1.10935107 1 14.96416782 -5.274477887 24.99959664 1.034239649 1.27114075 0.462426057 0.129683046 703.1456715 1348186.367 0.034837253 0.05201984 5.32E-06 5.274477887 0.236901101 ALAPADLMEHHS(ph)GSQGPLLTTGDLGK ddPTM_HeLa_A485_30min_R1 1 ALAPADLMEHHSGSQGPLLTTGDLGK 26 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 ALAPADLMEHHS(0.5)GS(0.5)QGPLLTTGDLGK 101.85 0.00081445 66848000 45206 56376 56331 21008 86385 58573 61579 71739 62220 52728 TRUE FALSE FALSE 55261.91874 62968.68279 77170.18103 22155.61384 77784.20608 61639.79171 48422.1436 54144.89777 74706.98328 39583.87999 1.396071299 1.590765807 1.949535545 0.559713041 1.965047542 1.557194285 1.223279366 1.367852211 1.88730825 1 15.27262541 -9.968747808 5.760974943 0.999999437 1.491284995 0.124920916 0.396165878 2.75E-06 4.92E-07 0.367963425 0.089244138 1.07E-10 9.968747808 0.491285558 ALAPADLMEHHS(ph)GSQGPLLTTGDLGK ddPTM_HeLa_A486_30min_R1 1 ALAPADLMEHHSGSQGPLLTTGDLGK 26 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 ALAPADLMEHHS(0.5)GS(0.5)QGPLLTTGDLGK 56.728 0.020212 92967000 40355 44222 39698 10101 60151 40149 42196 43065 44268 33272 TRUE FALSE FALSE 37526.32289 40717.68767 55070.12875 23515.63848 52606.30069 35195.82459 31638.1145 33260.0396 48105.18588 24940.47464 1.504635475 1.632594739 2.208062579 0.942870528 2.10927424 1.411193055 1.268545004 1.33357685 1.928799936 1 14.6062013 -6.467324492 24.99202995 1.400432087 1.674815457 0.123291348 0.387424365 686.8726607 309001.2451 0.130877094 0.115422229 3.41E-07 6.467324492 0.27438337 ALAPLLLAFVTKPNSALESCSFAR ddPTM_HeLa_A485_30min_R1 1 ALAPLLLAFVTKPNSALESCSFAR 24 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 0 161.08 7.97E-21 11140000 4525.4 5042 3738.3 3666.2 6214.3 5078.9 5651.5 6545.9 2862.2 6145.1 FALSE FALSE TRUE 5532.059618 5631.61804 5121.252734 3866.475223 5595.582472 5344.823351 4444.010856 4940.507761 3436.617286 4613.239662 1.199170219 1.220751241 1.110120676 0.838125809 1.212939904 1.158583499 0.963316711 1.070941057 0.744946618 1 12.17156453 -7.235008618 1.598164071 0.898873612 1.11493204 0.308159365 0.129319997 0.530514181 2.465265698 0.102481899 0.040613579 5.82E-08 7.235008618 0.216058428 ALAPLLLAFVTKPNSALESCSFAR ddPTM_HeLa_A486_30min_R1 3 ALAPLLLAFVTKPNSALESCSFAR 24 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 0 ;; ;; 202.73 2.24E-35 37952000 32722.4 43506.8 40417 14280.9 51598.1 44761.8 51375.2 47523.5 41577.7 46373.8 FALSE FALSE TRUE 30428.72874 40059.16272 56067.5448 33246.65692 45126.18516 39239.54422 38520.58157 36703.43648 45181.68851 34761.49864 0.875357218 1.152400336 1.612920818 0.956421852 1.298165699 1.128821994 1.108139266 1.055864618 1.299762389 1 15.08520266 -6.487289848 24.37553316 1.120294525 1.191726426 0.020771631 0.199177495 2122.385939 1453665.854 0.070211946 0.061893676 3.26E-07 6.487289848 0.0714319 ALAPS(ph)PPAEFIYYCVDEDELKR ddPTM_HeLa_A485_30min_R1 2 ALAPSPPAEFIYYCVDEDELKR 22 1 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;K7EN65 K7EPZ6;K7EN65 MBD1 Methyl-CpG-binding domain protein 1 1 0 ALAPS(0.998)PPAEFIY(0.002)YCVDEDELKR;ALAPS(1)PPAEFIYYCVDEDELKR ; 171.05 2.63E-14 435840000 227915 187483 176607 334520 351810 234029 333541 398060 218045 497040 TRUE FALSE FALSE 278613.9055 209407.506 241941.2785 352793.9806 316782.5611 246282.3966 262277.2406 300435.1609 261804.6315 373137.0753 0.74667977 0.561207984 0.648397853 0.945480907 0.848971014 0.660031964 0.70289783 0.805160304 0.701631247 1 18.50934619 -14 0.250365071 2.582628595 0.713309808 0.365205227 0.104104548 223.0957995 2.213715558 180.9480743 0.164794784 1.00E-14 14 -1.869318787 ALAPS(ph)PPAEFIYYCVDEDELKR ddPTM_HeLa_A486_30min_R1 2 ALAPSPPAEFIYYCVDEDELKR 22 1 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;K7EN65 K7EPZ6;K7EN65 MBD1 Methyl-CpG-binding domain protein 1 1 0 ALAPS(1)PPAEFIYYCVDEDELKR;ALAPS(1)PPAEFIYYCVDEDELKR ; 116.35 4.37E-05 369680000 219550 317750 192809 174159 332830 363520 411270 397120 256043 399170 TRUE FALSE FALSE 204160.6788 292570.3328 267469.8084 405450.9535 291083.3579 318672.5984 308365.896 306704.4451 278237.0134 299215.2338 0.682320469 0.977792237 0.893904381 1.355047831 0.972822654 1.065027988 1.030582207 1.025029512 0.929889197 1 18.1908241 -4.089804006 1.547526556 1.046708546 0.423049668 0.447063836 0.117506285 1.542949912 2.515817988 0.032449205 1.65066483 8.13E-05 4.089804006 -0.623658878 ALAPS(ph)PPAEFIYYCVDEDELQPYTNR ddPTM_HeLa_A486_30min_R1 1 ALAPSPPAEFIYYCVDEDELQPYTNR 26 0 Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 0 ALAPS(0.952)PPAEFIY(0.044)Y(0.005)CVDEDELQPYTNR 103.84 0.00053985 19722000 6633 10227 11213 3737.6 13049 11691 13339 12147 9200.8 10923 TRUE FALSE FALSE 6168.060953 9416.575274 15554.97389 8701.321688 11412.27274 10248.68329 10001.44111 9381.393267 9998.332752 8187.809703 0.753322461 1.150072561 1.899772278 1.062716649 1.39381265 1.25170023 1.221503855 1.145775684 1.221124222 1 12.99926186 -8.21012189 0.740188426 1.003011242 1.270712101 0.060351763 0.273081249 2.834330288 3.277392751 0.278335877 0.102841165 6.16E-09 8.21012189 0.267700859 ALAPS(ph)PPAEFIYYCVDEDELQPYTNRR ddPTM_HeLa_A485_30min_R1 1 ALAPSPPAEFIYYCVDEDELQPYTNRR 27 1 Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 0 ALAPS(0.919)PPAEFIY(0.069)Y(0.012)CVDEDELQPYTNRR 84.641 0.0028736 147250000 8390.6 10761 9449.2 7213.7 16403 12231 11880 18057 11602 14527 TRUE FALSE FALSE 10257.06002 12019.40534 12944.85229 7607.766165 14769.85973 12871.39625 9341.740949 13628.49244 13930.41498 10905.68625 0.940524034 1.102122789 1.18698191 0.697596281 1.354326485 1.180246337 0.856593591 1.249668487 1.277353361 1 13.41279294 -5.79264534 24.99998973 1.15205347 1.005054613 0.176322104 0.178485227 417.7052534 334633.34 0.056029433 0.063537221 1.61E-06 5.79264534 -0.146998857 ALAPS(ph)PPAEFIYYCVDEDELQPYTNRR ddPTM_HeLa_A486_30min_R1 1 ALAPSPPAEFIYYCVDEDELQPYTNRR 27 1 Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 0 ALAPS(1)PPAEFIYYCVDEDELQPYTNRR 71.608 0.0056312 128590000 9565.9 13698 12534 2591 14113 11531 12744 11311 8548.2 12022 TRUE FALSE FALSE 8895.379808 12612.52059 17387.50047 6031.978942 12342.81594 10108.42246 9555.316408 8735.732217 9289.164859 9011.61295 0.987101849 1.399585253 1.929454868 0.669356194 1.369656687 1.121710677 1.060333645 0.969386087 1.03079936 1 13.13756964 -5.272095345 24.99997606 1.049367316 1.434801145 0.328177476 0.266060857 853.9027743 2003340.923 0.074672823 0.112048603 5.34E-06 5.272095345 0.385433829 ALASNTSFFSGCS(ph)PIEEEAH ddPTM_HeLa_A485_30min_R1 5 ALASNTSFFSGCSPIEEEAH 20 0 O95239;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFS(0.003)GCS(0.997)PIEEEAH ;;;; 319.89 4.66E-102 1687326000 743786 882915 1040539 755570 1256541 809283 931546 958420 973339 1170433 TRUE FALSE FALSE 909238.6297 986164.2289 1425477.677 796844.8759 1131435.366 851655.8065 732513.5871 723365.9923 1168679.209 878665.5933 1.034794849 1.122343058 1.622321037 0.906880709 1.2876746 0.969260448 0.833665951 0.82325517 1.330061423 1 19.74495468 -6.276703339 23.15284682 0.970353074 1.198532632 0.175577124 0.218130711 509.3879406 772651.6021 0.076163348 0.067490566 5.29E-07 6.276703339 0.228179559 ALASNTSFFSGCS(ph)PIEEEAH ddPTM_HeLa_A486_30min_R1 6 ALASNTSFFSGCSPIEEEAH 20 0 O95239;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFSGCS(1)PIEEEAH;ALASNTSFFS(0.001)GCS(0.999)PIEEEAH ;;;;; 331.38 4.81E-114 2097946000 976670 1385608 1286788 402578 1655986 1173012 1256342 1309382 1133194 1074037 TRUE FALSE FALSE 908210.4765 1275807.376 1785066.775 937221.9292 1448276.794 1028297.706 941991.9434 1011264.302 1231420.168 805091.1444 1.128084047 1.584674462 2.217223214 1.164119039 1.798897932 1.277243841 1.170043851 1.256086729 1.529541316 1 19.61879259 -6.355976973 8.147606467 1.255949249 1.591027934 0.21889132 0.31303512 0.511606116 39.83222157 0.109835556 0.096746278 4.41E-07 6.355976973 0.335078685 ALASVPS(ph)PALPR ddPTM_HeLa_A485_30min_R1 1 ALASVPSPALPR 12 0 O60336-4;O60336-3;O60336-6;O60336;O60336-2 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 ALAS(0.005)VPS(0.995)PALPR 82.85 0.0032247 0 46599 56089 55122 50321 54819 53571 62229 62518 47647 63766 TRUE FALSE FALSE 56964.78679 62648.12064 75513.92162 53069.90881 49361.02788 56375.89472 48933.26579 47185.36248 57209.31586 47870.30973 1.18998158 1.308705145 1.577468833 1.108618455 1.031140767 1.177679757 1.022204913 0.985691606 1.195089737 1 15.54684352 -5.432033186 8.986009117 1.070935257 1.353296325 0.583705085 0.110451581 0.264424379 24.33502795 0.031016561 0.046015241 3.70E-06 5.432033186 0.282361068 ALASVPS(ph)PALPR ddPTM_HeLa_A486_30min_R1 2 ALASVPSPALPR 12 0 O60336-4;O60336-3;O60336-6;O60336;O60336-2 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 ALAS(0.001)VPS(0.999)PALPR;ALAS(0.007)VPS(0.993)PALPR ; 86.288 0.0025896 105652000 179707 184281 177098 68417 223172 140075 216198 189594 162805 209720 TRUE FALSE FALSE 167110.4673 169677.9024 245675.0884 159278.2336 195179.6868 122793.9707 162102.9737 146427.585 176917.0685 157204.747 1.063011586 1.079343377 1.562771438 1.01318972 1.241563569 0.781108542 1.031158262 0.93144506 1.125392661 1 17.26228526 -6.233682854 24.6799263 0.973119768 1.196385779 0.307905407 0.163465917 783.5558161 696704.8787 0.053391853 0.053379651 5.84E-07 6.233682854 0.223266011 ALAT(ph)PPKLHTCEK ddPTM_HeLa_A485_30min_R1 3 ALATPPKLHTCEK 13 1 E5RGS7;H0YBP7;B3KPU0;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7 PDLIM2 PDZ and LIM domain protein 2 1 0 ALAT(1)PPKLHTCEK;ALAT(1)PPKLHTCEK;ALAT(1)PPKLHTCEK ;; 124.43 3.60E-05 909340000 954040 802570 590610 1271340 1263730 1099650 1486030 1673090 830930 1608030 TRUE FALSE FALSE 1166262.907 896423.5801 809101.2163 1340790.085 1137908.604 1157225.974 1168527.551 1262762.054 997690.0293 1207177.715 0.966107055 0.742577973 0.670242009 1.110681608 0.942618962 0.958621054 0.967983037 1.046044869 0.826464917 1 20.20320665 -5.258698157 24.99987839 0.978021302 0.787935913 0.43275237 0.09750026 220.6274096 2012104.437 0.02626591 0.042997264 5.51E-06 5.258698157 -0.190085389 ALAT(ph)PPKLHTCEK ddPTM_HeLa_A486_30min_R1 1 ALATPPKLHTCEK 13 1 E5RGS7;H0YBP7;B3KPU0;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7 PDLIM2 PDZ and LIM domain protein 2 1 0 ALAT(1)PPKLHTCEK 82.349 0.0044582 83618000 173350 177170 107170 64941 189520 197730 214890 223740 156240 181730 TRUE FALSE FALSE 161199.0602 163130.404 148669.0941 151185.9299 165748.6344 173336.083 161122.2491 172799.2862 169783.009 136223.6251 1.183341436 1.197519181 1.091360577 1.109836343 1.216739271 1.272437749 1.182777576 1.268497194 1.246355093 1 17.0556174 -5.779897099 24.56026829 1.214206683 1.145360888 0.073239141 0.079114842 373.597725 497115.2024 0.02350829 0.026704855 1.66E-06 5.779897099 -0.068845796 ALATPPK(ac)LHTCEK ddPTM_HeLa_A485_30min_R1 2 ALATPPKLHTCEK 13 1 E5RGS7;H0YBP7;B3KPU0;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7 PDLIM2 PDZ and LIM domain protein 2 0 1 ; ALATPPK(1)LHTCEK;ALATPPK(1)LHTCEK 199.31 7.33E-15 4095400000 1133720 1272880 1148700 1297280 1698980 1364230 1824330 1963660 1303170 1789210 FALSE TRUE FALSE 1385912.103 1421732.243 1573651.931 1368147.122 1529823.586 1435658.973 1434546.992 1482069.306 1564704.266 1343192.875 1.031804239 1.058472145 1.17157555 1.018578305 1.138945578 1.068840522 1.068012658 1.103392769 1.16491406 1 20.35723505 -4.533033757 24.99316532 1.094353195 1.038471172 0.114056465 0.053894202 336.4128728 827967.2623 0.012811965 0.033986277 2.93E-05 4.533033757 -0.055882024 ALATPPK(ac)LHTCEK ddPTM_HeLa_A486_30min_R1 2 ALATPPKLHTCEK 13 1 E5RGS7;H0YBP7;B3KPU0;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7 PDLIM2 PDZ and LIM domain protein 2 0 1 ; ALATPPK(1)LHTCEK;ALATPPK(1)LHTCEK 202.13 5.68E-15 4228100000 2435400 2872700 2102210 1000620 3279700 2878400 3377800 3406000 2386300 3102700 FALSE TRUE FALSE 2264691.036 2645056.79 2916242.011 2329493.929 2868329.444 2523292.273 2532638.713 2630528.152 2593146.405 2325763.725 0.973740803 1.137285255 1.253885758 1.001603862 1.233284969 1.084930617 1.088949271 1.13103843 1.114965539 1 21.14927311 -8.093228622 17.73837967 1 1.117503121 0.14257886 0.082798992 4933.396297 938673.3809 0.076229419 0.019695345 8.07E-09 8.093228622 0.117503122 ALAVHLLDLGLRR ddPTM_HeLa_A485_30min_R1 2 ALAVHLLDLGLRR 13 1 Q86Y56-2;Q86Y56 Q86Y56-2 DNAAF5 "Dynein assembly factor 5, axonemal" 0 0 ; ; 96.103 0.002334 13362100 8347.1 13068 12772.3 5826.8 12609.3 12238.9 13981.2 17466.5 8589.6 8626.8 FALSE FALSE TRUE 10203.8836 14596.18892 17497.30527 6145.10333 11353.87382 12879.70988 10994.0024 13182.81349 10313.45393 6476.297524 1.57557363 2.253786036 2.701745126 0.948860565 1.753142714 1.988745858 1.697575252 2.035547848 1.592492299 1 12.66095355 -11.13255767 0.25323599 9.60E-14 1.968424873 0.260716031 0.435057404 50.05131809 1.792056692 30.03118194 0.684098295 7.37E-12 11.13255767 1.968424873 ALAVHLLDLGLRR ddPTM_HeLa_A486_30min_R1 2 ALAVHLLDLGLRR 13 1 Q86Y56-2;Q86Y56 Q86Y56-2 DNAAF5 "Dynein assembly factor 5, axonemal" 0 0 ; ; 78.692 0.0097689 12499200 6930 6419.3 7005.9 2588.3 9309.9 5998.4 6626.4 8424.6 5483.7 7063.5 FALSE FALSE TRUE 6444.242787 5910.611289 9718.772105 6025.693205 8142.165531 5258.378395 4968.404633 6506.502488 5959.031531 5294.753624 1.217099651 1.116314697 1.835547562 1.138049782 1.537779868 0.993129949 0.938363706 1.228858404 1.125459644 1 12.37034784 -6.273191587 24.9404764 1.064041066 1.368015932 0.354411477 0.210304723 873.6250608 1853997.604 0.073409103 0.065253065 5.33E-07 6.273191587 0.303974866 ALDFIASK ddPTM_HeLa_A485_30min_R1 1 ALDFIASK 8 0 O43707;Q08043;A0A087WSZ2;G3V5M4;G3V2E8;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 O43707;P12814-2 ACTN4;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1 0 0 114.89 0.0085926 22312000 54436 68143 60890 59840 87643 67579 79884 93503 66773 92061 FALSE FALSE TRUE 66545.1004 76111.73108 83415.74484 63108.90768 78916.95519 71117.33194 62816.13081 70571.24264 80173.72862 69111.88696 0.962860418 1.101282781 1.206966681 0.913141146 1.141872385 1.029017367 0.908904873 1.021115842 1.160057005 1 16.07664625 -6.502853766 24.71217464 1.016376522 1.068532531 0.042185034 0.096650553 2156.568579 2661356.115 0.034469292 0.029992538 3.14E-07 6.502853766 0.052156009 ALDFIASK ddPTM_HeLa_A486_30min_R1 1 ALDFIASK 8 0 O43707;Q08043;A0A087WSZ2;G3V5M4;G3V2E8;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 O43707;P12814-2 ACTN4;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1 0 0 111.95 0.0037332 0 213000 218250 179550 130260 379490 234140 269070 265550 197690 253200 FALSE FALSE TRUE 198069.7999 200955.0751 249076.5685 303251.863 331890.8256 205254.1874 201745.8401 205090.0619 214825.9284 189797.0719 1.043587227 1.058789122 1.312330933 1.597768922 1.748661464 1.081440221 1.062955492 1.080575479 1.131871668 1 17.53409821 -6.457684623 24.99889729 1.075079582 1.354120375 0.325009453 0.202352295 283.1442218 108572.2015 0.081212507 0.071622649 3.49E-07 6.457684623 0.279040793 ALDIDS(ph)DEESEPK ddPTM_HeLa_A485_30min_R1 1 ALDIDSDEESEPK 13 0 Q96DR7-3;Q96DR7-4;Q96DR7 Q96DR7-3 ARHGEF26 Rho guanine nucleotide exchange factor 26 1 0 ALDIDS(1)DEESEPK 208.68 8.61E-22 210100000 221980 177130 137890 347940 234280 228890 298730 220550 174320 446070 TRUE FALSE FALSE 271358.6852 197843.8127 188901.2491 366947.0812 210954.2606 240874.3265 234903.8951 166459.7667 209304.425 334872.9583 0.810333228 0.590802595 0.564098248 1.095779973 0.629953107 0.71930062 0.701471675 0.497083334 0.625026357 1 18.35325435 ALDIDS(ph)DEESEPK ddPTM_HeLa_A486_30min_R1 2 ALDIDSDEESEPK 13 0 Q96DR7-3;Q96DR7-4;Q96DR7 Q96DR7-3 ARHGEF26 Rho guanine nucleotide exchange factor 26 1 0 ALDIDS(1)DEESEPK;ALDIDS(1)DEESEPK ; 290.64 1.78E-57 477410000 428820 454220 227569 242410 389530 520800 640950 547730 392670 794850 TRUE FALSE FALSE 398761.9324 418225.953 315689.8113 564342.7307 340671.5152 456548.9911 480577.5307 423023.8359 426706.9518 595814.3864 0.669272078 0.701940004 0.529845903 0.947178758 0.571774571 0.766260435 0.806589337 0.709992651 0.716174301 1 19.18450343 -14 0.192034072 2.232651968 0.664139079 0.395120588 0.108881988 139.2091031 1.365017622 65.70533452 0.277737837 1.00E-14 14 -1.568512889 ALDSNS(ph)LENDDLSAPGREPGHFNPESR ddPTM_HeLa_A485_30min_R1 2 ALDSNSLENDDLSAPGREPGHFNPESR 27 1 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 ALDS(0.004)NS(0.996)LENDDLSAPGREPGHFNPESR;ALDSNS(1)LENDDLSAPGREPGHFNPESR ; 317.84 6.12E-109 1961260000 90162 116102 122002 105185 136172 122414 111128 131289 115260 137035 TRUE FALSE FALSE 110218.2258 129679.1189 167135.6167 110930.9902 122614.2376 128823.4078 87384.59497 99090.1669 138391.6248 102874.6964 1.071383242 1.260554086 1.624652344 1.078311714 1.191879459 1.252236091 0.849427488 0.963212241 1.34524455 1 16.65052865 -6.148499656 1.388456492 1.051160067 1.288191002 0.184457223 0.190508545 0.686635745 2.685703643 0.087099919 0.086363498 7.10E-07 6.148499656 0.237030935 ALDSNS(ph)LENDDLSAPGREPGHFNPESR ddPTM_HeLa_A486_30min_R1 3 ALDSNSLENDDLSAPGREPGHFNPESR 27 1 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 ALDS(0.005)NS(0.995)LENDDLSAPGREPGHFNPESR;ALDSNS(1)LENDDLSAPGREPGHFNPESR;ALDS(0.208)NS(0.792)LENDDLSAPGREPGHFNPESR ;; 268.3 6.71E-64 1492320000 171618 198313 150128 86906.1 220896 224720 267533 260981 197323 289245 TRUE FALSE FALSE 159588.4644 182597.9556 208261.5822 202321.7928 193189.1639 196996.3312 200593.4137 201561.3235 214427.1165 216816.1693 0.736054257 0.842178682 0.960544515 0.933149006 0.891027475 0.9085869 0.925177372 0.929641567 0.988981205 1 17.72611283 -4.467211033 2.702875158 0.935632212 0.732277912 0.79309072 0.033190156 0.141812629 1.771934414 0.00880691 0.051667628 3.41E-05 4.467211033 -0.203354301 ALDVMVSTFHK ddPTM_HeLa_A485_30min_R1 4 ALDVMVSTFHK 11 0 P26447 P26447 S100A4 Protein S100-A4 0 0 ;;; ;;; 199.7 2.24E-14 243225000 419727 529384 548360 271575 676734 587529 708918 799439 443966 567843 FALSE FALSE TRUE 513093.8231 591290.8538 751221.1832 286410.4546 609355.9868 618291.1099 557451.878 603375.3318 533065.9039 426290.1905 1.203625686 1.387061835 1.76222958 0.671867336 1.429439383 1.450399572 1.307681693 1.415409843 1.25047659 1 18.70147633 -8.026666894 18.69524369 0.999999988 1.329928668 0.126735033 0.259106738 180.8505331 126791.1395 0.244759491 0.063196612 9.40E-09 8.026666894 0.32992868 ALDVMVSTFHK ddPTM_HeLa_A486_30min_R1 4 ALDVMVSTFHK 11 0 P26447 P26447 S100A4 Protein S100-A4 0 0 ;;; ;;; 186.81 1.08E-09 209552000 428176 617026 588888 41736.3 809070 579255 638298 623737 676401 420944 FALSE FALSE TRUE 398163.0735 568130.6126 816921.2046 97164.21564 707588.8963 507792.4075 478589.0892 481725.7012 735031.9833 315536.8825 1.261859059 1.800520459 2.588988007 0.30793299 2.242491878 1.609296522 1.516745318 1.526685874 2.329464554 1 18.26744912 -10.81092155 2.665133213 0.786770535 1.68072397 0.103143819 0.607574179 78525296.48 58218932 108188732.5 0.144774709 1.55E-11 10.81092155 0.893953436 ALDVS(ph)ASDDEIAR ddPTM_HeLa_A485_30min_R1 1 ALDVSASDDEIAR 13 0 C9JLK2;H7C393;H7C1U0;C9JIF9;P13798 C9JLK2 APEH Acylamino-acid-releasing enzyme 1 0 ALDVS(0.703)AS(0.297)DDEIAR 302.37 5.75E-58 678960000 415890 510050 533030 441670 623790 610090 712980 712760 517130 640400 TRUE FALSE FALSE 508403.2957 569695.9107 730219.9782 465797.3137 561683.2773 642033.369 560645.9985 537954.4924 620913.2476 480760.0657 1.057499015 1.184990084 1.51888651 0.968876883 1.168323489 1.335454866 1.166165908 1.118966676 1.291524176 1 18.87495754 -10.68330616 2.705754599 0.971857441 1.202756684 0.147101181 0.14528835 62169883.36 55076068.58 12047674.76 0.035448625 2.07E-11 10.68330616 0.230899242 ALDVS(ph)ASDDEIAR ddPTM_HeLa_A486_30min_R1 1 ALDVSASDDEIAR 13 0 C9JLK2;H7C393;H7C1U0;C9JIF9;P13798 C9JLK2 APEH Acylamino-acid-releasing enzyme 1 0 ALDVS(0.663)AS(0.337)DDEIAR 263.9 1.04E-53 0 174860 230740 210840 78330 278960 213640 236750 245150 211530 244010 TRUE FALSE FALSE 162603.217 212455.3221 292482.8945 182356.1986 243970.2356 187283.2689 177512.6459 189334.6966 229865.5907 182908.3078 0.888987597 1.161540034 1.599068397 0.996981498 1.333839007 1.023918876 0.970500728 1.035134483 1.256725807 1 17.48076108 -6.288824661 24.51200061 1.054029663 1.205491109 0.114389156 0.192146927 1290.021944 1154667.143 0.068257337 0.060213599 5.14E-07 6.288824661 0.151461446 ALDVSAS(ph)DDEIAR ddPTM_HeLa_A485_30min_R1 1 ALDVSASDDEIAR 13 0 C9JLK2;H7C393;H7C1U0;C9JIF9;P13798 C9JLK2 APEH Acylamino-acid-releasing enzyme 1 0 ALDVS(0.112)AS(0.888)DDEIAR 200.19 1.94E-21 552740000 308340 406870 395810 329720 494100 469940 516510 566910 355680 435970 TRUE FALSE FALSE 376929.1692 454449.9072 542236.59 347731.7687 444905.6691 494545.3317 406153.419 427874.4336 427061.7135 327290.7024 1.151664763 1.388520675 1.65674303 1.062455383 1.359359327 1.511027744 1.240956177 1.307322299 1.304839124 1 18.32021309 -9.080875272 0.626032042 0.978210638 1.351259572 0.282146405 0.159664 6.945027967 2.933618737 0.536394217 0.063947913 8.30E-10 9.080875272 0.373048934 ALDVSAS(ph)DDEIAR ddPTM_HeLa_A486_30min_R1 1 ALDVSASDDEIAR 13 0 C9JLK2;H7C393;H7C1U0;C9JIF9;P13798 C9JLK2 APEH Acylamino-acid-releasing enzyme 1 0 ALDVS(0.339)AS(0.661)DDEIAR 236.42 8.09E-35 728120000 536800 738460 725050 243990 838330 680730 739450 674250 631250 730730 TRUE FALSE FALSE 499173.092 679941.7402 1005808.778 568021.0506 733178.8343 596748.4538 554431.7889 520737.9938 685967.2583 547750.4517 0.911314798 1.241334878 1.83625367 1.037006996 1.338527119 1.089453148 1.012197776 0.950684736 1.252335358 1 19.06315924 -6.349364356 4.737107693 1.050226034 1.289225484 0.164446935 0.237848842 0.412343649 15.98415639 0.087393471 0.076866944 4.47E-07 6.349364356 0.23899945 ALDYY(ph)MLR ddPTM_HeLa_A485_30min_R1 2 ALDYYMLR 8 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 ALDY(0.413)Y(0.587)MLR;ALDY(0.323)Y(0.677)MLR ; 76.899 0.0097084 46996000 31895 43379 48887 33634 49252 40295 44368 53813 44816 42046 TRUE FALSE FALSE 38989.93271 48451.7967 66972.33566 35471.34025 44348.29795 42404.78389 34888.41435 40615.27737 53810.16012 31564.706 1.235238266 1.534999144 2.121747488 1.1237659 1.404996389 1.343424009 1.105298251 1.286730736 1.70475721 1 14.94602469 ALEAASLSQHPPSLCIS(ph)DS(ph)EEEEEER ddPTM_HeLa_A485_30min_R1 1 ALEAASLSQHPPSLCISDSEEEEEER 26 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 0 ALEAASLSQHPPSLCIS(1)DS(1)EEEEEER 123.09 1.01E-05 394700000 130780 223130 260650 139490 272090 133810 183730 189990 202920 212690 TRUE FALSE FALSE 159871.5598 249223.1125 357075.2816 147109.9855 244999.7642 140816.0847 144474.5846 143394.6546 243644.1827 159670.2973 1.001260488 1.560860829 2.236328783 0.921335953 1.534410397 0.881917846 0.904830686 0.898067186 1.525920518 1 17.28473643 -5.319863451 24.99916598 1.092444639 1.595629465 0.290601975 0.361018392 325.6239672 139330.953 0.102444678 0.151950059 4.79E-06 5.319863451 0.503184826 ALEAASLSQHPPSLCIS(ph)DS(ph)EEEEEER ddPTM_HeLa_A486_30min_R1 4 ALEAASLSQHPPSLCISDSEEEEEER 26 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 0 ALEAASLSQHPPSLCIS(1)DS(1)EEEEEER;ALEAASLSQHPPSLCIS(1)DS(1)EEEEEER;ALEAASLSQHPPSLCIS(1)DS(1)EEEEEER;ALEAASLSQHPPS(0.001)LCIS(0.999)DS(1)EEEEEER ;;; 151.38 3.37E-09 2475130000 605210 938130 956600 165494 1104220 658085 713651 722037 825330 466261 TRUE FALSE FALSE 562787.9043 863789.1622 1327021.139 385278.3956 965718.4312 576897.1636 535087.9716 557644.9371 896870.2689 349506.2108 1.610237206 2.47145583 3.796845658 1.102350641 2.763093763 1.650606329 1.530982727 1.595522254 2.566106814 1 18.41495857 -6.017362616 1.259691463 1.701264529 2.459502939 0.140317295 0.765496818 0.902904133 2.981280583 0.336493868 0.376889854 9.61E-07 6.017362616 0.75823841 ALEAELDAQHLS(ph)ETFDNIDNLSPK ddPTM_HeLa_A485_30min_R1 5 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 ALEAELDAQHLS(0.333)ET(0.333)FDNIDNLS(0.333)PK;ALEAELDAQHLS(0.333)ET(0.333)FDNIDNLS(0.333)PK;ALEAELDAQHLS(0.333)ET(0.333)FDNIDNLS(0.333)PK;ALEAELDAQHLS(0.395)ET(0.395)FDNIDNLS(0.21)PK;ALEAELDAQHLS(0.36)ET(0.36)FDNIDNLS(0.28)PK ;;;; 99.093 0.0008609 503665000 427075 375209 306183 378765 310993 670686 514004 678261 485859 408249 TRUE FALSE FALSE 522076.3604 419086.4287 419452.833 399455.9729 280029.445 705802.0819 404182.8464 511916.4263 583366.4447 306480.0376 1.703459594 1.367418355 1.368613879 1.303367019 0.913695545 2.302930029 1.318790123 1.6703092 1.903440268 1 18.22543358 -6.232759022 24.99987594 1.660969648 1.333836901 0.148753574 0.366246606 1332.94844 1161895.086 0.115736421 0.115717813 5.85E-07 6.232759022 -0.327132747 ALEAELDAQHLS(ph)ETFDNIDNLSPK ddPTM_HeLa_A486_30min_R1 3 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 ALEAELDAQHLS(0.333)ET(0.333)FDNIDNLS(0.333)PK;ALEAELDAQHLS(0.403)ET(0.403)FDNIDNLS(0.194)PK;ALEAELDAQHLS(0.806)ET(0.175)FDNIDNLS(0.019)PK ;; 166.28 3.23E-14 392361000 327345 459642 319133 34928.5 455436 472294 378321 506603 334139 280697 TRUE FALSE FALSE 304399.8059 423218.2939 442709.8443 81315.31319 398310.9701 414027.1682 283661.0843 391260.556 363102.4376 210408.6442 1.446707701 2.011411155 2.104047797 0.386463748 1.893035201 1.967728892 1.348143682 1.859527005 1.725701142 1 17.68283445 -10.10592487 4.770399154 0.999965179 1.641136954 0.138741072 0.476885984 0.000176239 3.30E-05 0.460760006 0.111744665 7.84E-11 10.10592487 0.641171776 ALEAELDAQHLSETFDNIDNLS(ph)PK ddPTM_HeLa_A485_30min_R1 5 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLS(0.273)ET(0.273)FDNIDNLS(0.455)PK;ALEAELDAQHLSETFDNIDNLS(1)PK ;;;; 334.89 6.21E-123 755648000 307833 365364 307744 228306 520957 369790 504798 515831 339505 485152 TRUE FALSE FALSE 376309.3888 408090.1416 421591.3119 240777.7787 469088.6919 389151.6326 396943.7835 389322.6385 407640.5394 364212.535 1.033213722 1.120472533 1.157542016 0.661091411 1.287953178 1.068474023 1.089868539 1.068943546 1.119238083 1 18.47442105 ALEAELDAQHLSETFDNIDNLS(ph)PK ddPTM_HeLa_A486_30min_R1 5 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLSETFDNIDNLS(1)PK;ALEAELDAQHLS(0.229)ET(0.229)FDNIDNLS(0.542)PK ;;;; 243.24 3.96E-49 411640000 350993 402553 279128 22518.3 441593 351183 465432 418729 334436 233889 TRUE FALSE FALSE 326390.2032 370653.2342 387213.8369 52423.74041 386204.2882 307857.612 348975.9908 323393.5475 363425.1818 175321.672 1.861664901 2.11413244 2.208590829 0.299014604 2.202832563 1.755958681 1.990489748 1.844572572 2.072905064 1 17.41964482 ALEEAMEQK ddPTM_HeLa_A486_30min_R1 1 ALEEAMEQK 9 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 63.673 0.0058362 0 68431 78418 75535 60617 99922 86791 149550 133980 78140 123210 FALSE FALSE TRUE 63634.34028 72203.87209 104784.1749 141119.4394 87388.85102 76083.60885 112131.0082 103475.6788 84913.23812 92357.41404 0.689000888 0.781787503 1.134550767 1.527970882 0.946202879 0.823795357 1.214098612 1.120383023 0.919398177 1 16.49494016 -4.695034272 5.013460621 1.096124888 0.717215186 0.366581284 0.184857982 0.213895386 10.13399279 0.050280139 0.137965415 2.02E-05 4.695034272 -0.378909702 ALEEGDGS(ph)VSGS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 ALEEGDGSVSGSSPR 15 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 2 0 ALEEGDGS(0.988)VS(0.164)GS(0.474)S(0.374)PR 87.519 0.00081313 0 97705 111210 114470 30568 118000 109290 115780 110290 86762 124040 TRUE FALSE FALSE 90856.38405 102397.3146 158795.8496 71163.84882 103199.3397 95806.91098 86810.6194 85179.37461 94282.60002 92979.57664 0.977164957 1.101288243 1.70785731 0.765370756 1.109914063 1.030408122 0.933652556 0.916108437 1.014014082 1 16.50462624 -5.31937128 24.99999934 0.970770399 1.246031374 0.324493256 0.194607432 324.0047392 139820.6494 0.054645581 0.081052514 4.79E-06 5.31937128 0.275260975 ALEEGDGSVSGS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 ALEEGDGSVSGSSPR 15 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 ALEEGDGSVS(0.121)GS(0.739)S(0.14)PR 107.35 0.00028125 2607900000 1314100 1561700 1411300 489350 1730200 1320800 1438100 1485600 1196000 1557400 TRUE FALSE FALSE 1221988.376 1437945.204 1957793.156 1139231.53 1513182.183 1157853.125 1078272.169 1147361.31 1299670.243 1167416.903 1.046745488 1.231732383 1.677029989 0.975856635 1.296179778 0.991807744 0.923639333 0.982820539 1.113287155 1 20.15488843 -6.266807751 24.00542541 0.996320239 1.253736215 0.314806059 0.179082494 319.2967894 1427774.044 0.062882274 0.057111055 5.41E-07 6.266807751 0.257415976 ALEEGDGSVSGSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ALEEGDGSVSGSSPR 15 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 ALEEGDGSVSGS(0.127)S(0.872)PR;ALEEGDGSVS(0.001)GS(0.114)S(0.885)PR ; 184.02 7.85E-18 5678800000 2577000 3957200 3564200 2798500 4033300 3223500 3671000 4026900 3248800 3124600 TRUE FALSE FALSE 3150244.759 4419960.117 4882745.899 2951374.969 3631730.49 3392277.476 2886660.861 3039296.461 3900804.36 2345694.724 1.342990086 1.884286166 2.08157773 1.258209322 1.548253681 1.446171763 1.230620861 1.295691392 1.662963352 1 21.16158384 -5.278765569 24.98588489 1.368602857 1.781084838 0.384480147 0.242945049 814.602952 1174727.08 0.067425118 0.100272418 5.26E-06 5.278765569 0.412481981 ALEEGDGSVSGSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ALEEGDGSVSGSSPR 15 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 ALEEGDGSVSGS(0.014)S(0.986)PR 252.36 2.69E-43 2986900000 1891900 2342600 2009100 682590 2488100 2113100 1999400 2186900 1874300 1978000 TRUE FALSE FALSE 1759287.58 2156963.844 2787077.326 1589104.016 2176019.297 1852407.206 1499128.973 1688990.61 2036765.833 1482695.925 1.186546445 1.454758058 1.879736282 1.071766631 1.467609953 1.24935071 1.011083221 1.139134856 1.373690855 1 20.49979133 -6.146679103 1.313814638 1.142276684 1.454921866 0.249940749 0.222103237 0.624962639 2.204868346 0.102613733 0.102075425 7.13E-07 6.146679103 0.312645182 ALEHFTDLYDIKR ddPTM_HeLa_A485_30min_R1 1 ALEHFTDLYDIKR 13 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 188.91 3.04E-17 222050000 405560 544130 492800 367700 678180 556000 668230 790020 486000 597310 FALSE FALSE TRUE 495775.4228 607761.2702 675107.2271 387786.5199 610658.018 585111.3003 525457.2016 596266.3563 583535.7421 448411.6097 1.105625751 1.355364708 1.505552516 0.864800357 1.361824727 1.304853147 1.171818905 1.32972997 1.301339505 1 18.77446411 -10.09509945 4.713120262 0.999987267 1.258725679 0.175453712 0.16614657 2.39E-05 4.58E-06 0.156342345 0.037916529 8.03E-11 10.09509945 0.258738412 ALEHFTDLYDIKR ddPTM_HeLa_A486_30min_R1 1 ALEHFTDLYDIKR 13 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 114.24 0.00031095 252970000 34417 31282 22959 10716 37663 31808 43641 34213 36222 36525 FALSE FALSE TRUE 32004.54603 28803.10039 31849.33966 24947.38956 32938.95535 27883.85236 32721.56021 26423.44676 39361.75212 27378.90226 1.168949205 1.052018087 1.163280374 0.911190278 1.203078014 1.018443037 1.195137771 0.965102491 1.437667287 1 14.74077698 -7.728608627 24.99987817 1.218836385 1.085824905 0.134607226 0.136065253 301.4703396 229563.6031 0.082495452 0.03117563 1.87E-08 7.728608627 -0.13301148 ALEIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ALEISPR 7 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 ALEIS(1)PR 88.37 0.007191 115370000 102480 125970 122600 38325 146380 114100 128710 123240 109480 113330 TRUE FALSE FALSE 95296.68121 115987.6784 170074.0033 89222.53684 128019.6555 100023.5021 96505.39664 95180.94231 118969.8145 84951.43035 1.121778419 1.365341089 2.002014594 1.05027704 1.506974691 1.17741987 1.136006731 1.120416006 1.400445102 1 16.37435062 -6.277105241 21.68769778 1.17245521 1.419821654 0.181195853 0.257038292 259.9801385 359910.8987 0.090253266 0.0800223 5.28E-07 6.277105241 0.247366444 ALELNMLS(ph)LK ddPTM_HeLa_A485_30min_R1 2 ALELNMLSLK 10 0 Q9Y617 Q9Y617 PSAT1 Phosphoserine aminotransferase 1 0 ALELNMLS(1)LK;ALELNMLS(1)LK ; 134.99 4.95E-05 35280000 109832 100897 78327 153074 151585 119462 175207 180233 96223 197451 TRUE FALSE FALSE 134263.7495 112696.0265 107303.4168 161436.045 136492.6652 125716.8456 137772.5931 136030.5742 115534.0735 148230.0995 0.905779258 0.760277615 0.723897623 1.08909085 0.92081612 0.848119552 0.929450858 0.917698731 0.779423841 1 17.1774789 -5.223915452 24.99998701 0.919578668 0.79301412 0.307891645 0.088667394 727.1765135 484474.1866 0.024071435 0.041691665 5.97E-06 5.223915452 -0.126564548 ALELNMLS(ph)LK ddPTM_HeLa_A486_30min_R1 2 ALELNMLSLK 10 0 Q9Y617 Q9Y617 PSAT1 Phosphoserine aminotransferase 1 0 ALELNMLS(1)LK;ALELNMLS(1)LK ; 116.54 0.00043573 61229000 80465 92324 61134 63987 99907 97563 130712 127525 72727 124993 TRUE FALSE FALSE 74824.81902 85007.91 84806.72203 148964.9697 87375.73246 85526.66901 98006.47507 98490.34135 79031.03492 93693.93923 0.798608956 0.907293585 0.905146296 1.589910414 0.93256547 0.912830325 1.046027906 1.051192235 0.843502104 1 16.51566811 -9.667303689 19.67357908 1 1.009005827 0 0.211774368 0 0 0.210035704 0.050941141 2.15E-10 9.667303689 0.009005827 ALELPLAASS(ph)IPRPR ddPTM_HeLa_A485_30min_R1 1 ALELPLAASSIPRPR 15 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 ALELPLAAS(0.183)S(0.817)IPRPR 46.159 0.031048 28127000 32071 46716 41614 35527 49121 44163 52973 57152 39424 44201 TRUE FALSE FALSE 39205.08331 52179.02982 57008.7503 37467.75005 44230.34077 46475.30639 41654.8858 43135.38239 47336.03518 33182.50416 1.181498633 1.572486199 1.718036409 1.129141727 1.332941617 1.400596717 1.255326771 1.299943554 1.426535953 1 15.01813514 -13.01237613 0.178000864 1.71E-10 1.45821239 0.300693003 0.167548365 114.7958526 1.513505699 41.93589274 0.573737499 9.72E-14 13.01237613 1.45821239 ALELPLAASSIPRPRT(ph)PS(ph)PESHR ddPTM_HeLa_A485_30min_R1 1 ALELPLAASSIPRPRTPSPESHR 23 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 ALELPLAAS(0.029)S(0.109)IPRPRT(0.864)PS(0.848)PES(0.149)HR 82.089 0.0034497 34759000 5310.1 14992 18985 8101.9 42385 27757 36146 58050 18543 15985 TRUE FALSE FALSE 6491.313425 16745.18399 26008.34153 8544.486282 38165.00058 29210.3136 28423.11181 43813.14648 22264.41001 12000.23368 0.540932252 1.395404825 2.167319589 0.712026658 3.180354782 2.434145399 2.368546527 3.651024442 1.855331371 1 13.55077488 -5.759786779 24.99999773 2.546096203 1.286412447 0.353121898 0.787928712 46.33230999 700890.717 0.22752004 0.278410693 1.74E-06 5.759786779 -1.259683756 ALELTGLK ddPTM_HeLa_A485_30min_R1 1 ALELTGLK 8 0 P19338 P19338 NCL Nucleolin 0 0 117.4 0.0067509 33023000 25063 31156 26529 30102 36012 33242 39122 45589 30519 46097 FALSE FALSE TRUE 30638.17788 34799.42318 36343.18106 31746.39604 32426.51883 34982.49972 30763.2651 34408.22627 36643.88336 34605.86625 0.885346365 1.005593183 1.050202899 0.917370362 0.937023758 1.010883515 0.888960989 0.99428883 1.058892244 1 15.078729 -7.523027268 24.92277403 1.02849429 0.960373813 0.237916412 0.052463966 7.975350799 1336773.176 0.034529813 0.013341163 3.00E-08 7.523027268 -0.068120477 ALENDFFNS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 ALENDFFNSPPR 12 0 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 0 ALENDFFNS(1)PPR;ALENDFFNS(1)PPR ; 150.34 1.27E-07 254780000 282050 404640 421630 279200 443630 345090 409270 447410 322200 380710 TRUE FALSE FALSE 344791.0494 451959.1281 577608.4825 294451.989 399460.6395 363158.3788 321826.1211 337681.996 386862.5846 285806.0034 1.20638141 1.581349316 2.020980929 1.030251239 1.397663571 1.270646433 1.126029955 1.181507708 1.353584529 1 18.1246767 -5.286338117 24.99995539 1.210620749 1.600748582 0.422688301 0.218270793 738.5974744 741598.277 0.061430318 0.091158806 5.17E-06 5.286338117 0.390127833 ALENDFFNS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 ALENDFFNSPPR 12 0 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 0 ALENDFFNS(1)PPR;ALENDFFNS(1)PPR;ALENDFFNS(1)PPR ;; 149.35 2.51E-06 379790000 232946 289285 276578 96503 338451 259510 277084 293235 234223 235909 TRUE FALSE FALSE 216617.6883 266361.003 383676.4086 224663.861 295999.3196 227494.2947 207754.6525 226471.7918 254525.6382 176835.8509 1.224964775 1.506261325 2.169675474 1.270465575 1.673864876 1.28647157 1.174844645 1.280689355 1.439332788 1 17.43205126 -6.333814161 5.857460109 1.246446073 1.581968436 0.286060398 0.262534027 0.319476481 19.86812675 0.093976531 0.082876846 4.64E-07 6.333814161 0.335522363 ALENDFFNS(ph)PPRK ddPTM_HeLa_A486_30min_R1 1 ALENDFFNSPPRK 13 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 0 ALENDFFNS(1)PPRK 90.714 0.00091905 1366600000 924370 1052400 736860 356410 1155000 911890 1171200 1106600 728220 980590 TRUE FALSE FALSE 859576.4365 969003.9912 1022191.926 829740.492 1010129.13 799390.2832 878153.3723 854651.3369 791342.6959 735043.8814 1.169421933 1.318294072 1.390654288 1.128831234 1.374243301 1.087540898 1.194695166 1.162721517 1.076592454 1 19.48747085 -7.353363967 0.498130366 0.999457327 1.288868629 0.482397385 0.089586658 0.745013357 0.442660794 0.090651604 0.059275064 4.43E-08 7.353363967 0.289411302 ALEQQEAES(ph)DSS(ph)DTEEKDDDDDDEEDVGKR ddPTM_HeLa_A486_30min_R1 1 ALEQQEAESDSSDTEEKDDDDDDEEDVGKR 30 2 Q9BXY0 Q9BXY0 MAK16 Protein MAK16 homolog 2 0 ALEQQEAES(0.999)DS(0.244)S(0.757)DTEEKDDDDDDEEDVGKR 235.6 2.97E-50 1473800000 668700 595620 213060 866130 473670 918100 1338500 1187800 448760 1881500 TRUE FALSE FALSE 621827.5832 548420.902 295562.5379 2016394.412 414257.8918 804834.1566 1003593.143 917363.8695 487658.8781 1410360.153 0.440899852 0.388851671 0.209565292 1.429701773 0.293724898 0.570658604 0.711586427 0.650446531 0.345769041 1 20.42763219 -11.5296823 2.210636255 7.37648633 0.569945524 0.139185704 0.327352798 9225137.442 545588.8813 296729776.9 0.080453359 2.95E-12 11.5296823 -6.806540806 ALES(ph)PERPFLAILGGAK ddPTM_HeLa_A485_30min_R1 5 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 1 0 ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK ;;;; 228.15 8.29E-35 14984691700 986898 980028 909334 1142976 1293022 1233469 1609754 1716444 1030261 1524261 TRUE FALSE FALSE 1206430.055 1094633.749 1245734.487 1205413.885 1164284.19 1298051.53 1265816.907 1295483.418 1237024.933 1144290.785 1.054303741 0.956604531 1.088652031 1.053415706 1.017472311 1.134372091 1.106202134 1.132127808 1.081040719 1 20.12602228 -6.251644583 24.75322526 1.099972388 1.033889844 0.251251963 0.047590385 717.9443424 1814377.816 0.015286681 0.01508719 5.60E-07 6.251644583 -0.066082543 ALES(ph)PERPFLAILGGAK ddPTM_HeLa_A486_30min_R1 6 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 1 0 ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK ;;;;; 221.05 1.84E-34 17812338700 1614304 1985738 1394416 823050.8 2118160 2028870 2284073 2306708 1605279 2124857 TRUE FALSE FALSE 1501149.626 1828380.889 1934371.219 1916103.857 1852480.622 1778568.647 1712573.777 1781520.943 1744425.876 1592778.977 0.942472024 1.147918773 1.214463053 1.202994191 1.163049393 1.116644979 1.075211189 1.11849853 1.095209004 1 20.60311465 -6.569447422 3.952202942 1.082409199 1.14316223 0.118567997 0.075964283 0.523604746 17.35573085 0.031201916 0.024229598 2.69E-07 6.569447422 0.060753031 ALESPERPFLAILGGAK ddPTM_HeLa_A485_30min_R1 4 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ;;; ;;; 206.8 3.69E-25 949704000 841000 899102 853100 1005220 1337380 1110590 1410860 1494720 911610 1350370 FALSE FALSE TRUE 1028077.549 1004244.158 1168697.19 1060132.623 1204225.751 1168738.775 1109418.235 1128137.576 1094561.765 1013747.611 1.014135607 0.990625425 1.152848281 1.045755977 1.187895033 1.152889302 1.094373218 1.112838703 1.079718219 1 19.95126708 -4.750988344 24.99954526 1.109739587 1.002380461 0.368170755 0.052334117 196.9011312 470990.8094 0.012759002 0.032989612 1.77E-05 4.750988344 -0.107359127 ALESPERPFLAILGGAK ddPTM_HeLa_A486_30min_R1 4 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ;;; ;;; 214.22 5.19E-26 649756000 770673 987170 787670 464127 1406900 1021420 1179330 1243740 883860 1107510 FALSE FALSE TRUE 716652.8025 908943.054 1092676.919 1080511.112 1230433.483 895407.5854 884249.1603 960567.5527 960473.6964 830182.2873 0.863247522 1.094871654 1.316189149 1.301534769 1.482124471 1.078567441 1.065126508 1.157056188 1.156943133 1 19.66306863 -8.245134838 0.703973192 1.003425399 1.19415113 0.089000865 0.160006789 2.745274347 2.826981418 0.178994108 0.06676199 5.69E-09 8.245134838 0.190725731 ALEYSNGIFDCQS(ph)PTSPFMGSLR ddPTM_HeLa_A485_30min_R1 1 ALEYSNGIFDCQSPTSPFMGSLR 23 0 Q86W92-2;Q86W92-4;Q86W92;F5H6Q7;F5H0E0;F5H495;A0A0A0MTP2;Q86W92-5 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 ALEYSNGIFDCQS(0.998)PT(0.002)SPFMGSLR 218.98 4.29E-38 77841000 34405 42994 51040 35321 56227 45728 58432 60275 39071 50471 TRUE FALSE FALSE 42058.27355 48021.7743 69921.81995 37250.49679 50628.84246 48122.24737 45947.52585 45492.46174 46912.19132 37889.50855 1.110024256 1.26741613 1.845413747 0.983134863 1.336223255 1.270067869 1.212671465 1.200661172 1.238131428 1 15.20951081 -8.442243799 0.334470664 0.95826079 1.344443759 0.150402493 0.210148842 5.267790213 1.258369065 0.637085302 0.230334614 3.61E-09 8.442243799 0.386182969 ALEYSNGIFDCQS(ph)PTSPFMGSLR ddPTM_HeLa_A486_30min_R1 1 ALEYSNGIFDCQSPTSPFMGSLR 23 0 Q86W92-2;Q86W92-4;Q86W92;F5H6Q7;F5H0E0;F5H495;A0A0A0MTP2;Q86W92-5 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 ALEYSNGIFDCQS(1)PTSPFMGSLR 242.48 5.94E-49 102430000 25358 44053 39297 12607 45750 33291 43504 44814 34846 34832 TRUE FALSE FALSE 23580.53515 40562.07984 54513.85081 29349.73312 40011.6084 29183.8949 32618.83906 34610.83048 37866.47934 26109.84048 0.903128273 1.553516954 2.0878661 1.124087033 1.532434042 1.117735473 1.249292928 1.325585674 1.450276166 1 14.67230602 ALGDS(ph)SPSQAMQEYIAVVK ddPTM_HeLa_A485_30min_R1 2 ALGDSSPSQAMQEYIAVVK 19 0 A0A2R8Y544;Q9BR61 A0A2R8Y544 ACBD6 Acyl-CoA-binding domain-containing protein 6 1 0 ALGDS(0.562)S(0.438)PSQAMQEYIAVVK;ALGDS(0.5)S(0.5)PS(0.001)QAMQEYIAVVK ; 142.3 2.72E-08 53888000 47432 53155 50767 50795 69574 59245 74082 76238 51059 70359 TRUE FALSE FALSE 57983.08476 59371.01486 69547.82589 53569.80223 62646.96827 62346.97659 58253.77551 57540.51096 61306.07296 52819.79616 1.097752907 1.12402961 1.316700005 1.014199337 1.186050928 1.180371397 1.102877704 1.089373969 1.160664702 1 15.68879111 -10.87299773 0.28719032 0.856469385 1.157169627 0.241530231 0.07550739 42.03105054 1.943381173 4.166134121 0.086894951 1.34E-11 10.87299773 0.300700242 ALGDS(ph)SPSQAMQEYIAVVK ddPTM_HeLa_A486_30min_R1 1 ALGDSSPSQAMQEYIAVVK 19 0 A0A2R8Y544;Q9BR61 A0A2R8Y544 ACBD6 Acyl-CoA-binding domain-containing protein 6 1 0 ALGDS(0.499)S(0.499)PS(0.001)QAMQEYIAVVK 77.562 0.0033119 34782000 23633 29876 21776 9929.6 34775 29617 29522 30915 21606 29342 TRUE FALSE FALSE 21976.44874 27508.51695 30208.25038 23116.61061 30413.19524 25963.15566 22135.28335 23876.32937 23478.82548 21994.57222 0.999176002 1.250695703 1.373441142 1.051014332 1.382759116 1.180434673 1.006397539 1.085555524 1.067482706 1 14.42485992 -6.654682848 5.47821863 1.047807327 1.219712116 0.330343152 0.115941685 0.248068685 11.07145168 0.044204877 0.03379714 2.21E-07 6.654682848 0.171904788 ALGDSS(ph)PSQAMQEYIAVVK ddPTM_HeLa_A486_30min_R1 2 ALGDSSPSQAMQEYIAVVK 19 0 A0A2R8Y544;Q9BR61 A0A2R8Y544 ACBD6 Acyl-CoA-binding domain-containing protein 6 1 0 ALGDS(0.113)S(0.876)PS(0.011)QAMQEYIAVVK;ALGDS(0.094)S(0.569)PS(0.337)QAMQEYIAVVK ; 186.97 5.44E-21 32091000 50243 70692 50547 22428.2 76630 69177 62180 68404 52032 58543 TRUE FALSE FALSE 46721.22516 65090.10846 70120.1521 52213.98306 67018.35085 60642.64508 46621.90633 52829.90245 56542.17565 43883.45175 1.064666139 1.483249514 1.597872303 1.189833091 1.527189594 1.38190235 1.062402898 1.203868437 1.288462357 1 15.42138939 -6.745131824 24.31861035 1.15567249 1.387831158 0.326909198 0.164074949 209.0030246 311675.2908 0.061820202 0.047724599 1.80E-07 6.745131824 0.232158667 ALGS(ph)PTK ddPTM_HeLa_A485_30min_R1 3 ALGSPTK 7 0 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 NANS Sialic acid synthase 1 0 ALGS(0.988)PT(0.012)K;ALGS(0.999)PT(0.001)K;ALGS(1)PTK ;; 120.31 0.0020431 2752290000 4756150 4484500 3532260 6246000 5414620 4783520 7040740 6570110 4297540 8035220 TRUE FALSE FALSE 5814139.159 5008923.265 4838989.964 6587203.164 4875521.421 5033977.71 5536428.381 4958780.221 5160016.859 6032187.531 0.963852521 0.830365972 0.802194882 1.092009015 0.80825097 0.834519432 0.917814367 0.822053392 0.855413866 1 22.52424985 ALGS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 ALGSPTK 7 0 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 NANS Sialic acid synthase 1 0 ALGS(0.993)PT(0.007)K;ALGS(1)PTK ; 121.64 0.0019166 3210400000 4573000 4113500 2798600 1981900 3974400 4865900 5534100 4703700 3372900 5844200 TRUE FALSE FALSE 4252456.315 3787531.279 3882292.869 4613963.36 3475893.692 4265594.731 4149409.646 3632770.191 3665265.688 4380774.281 0.970708839 0.864580331 0.886211574 1.053230106 0.793442773 0.973707947 0.94718636 0.829252995 0.836670747 1 22.06275445 -7.244022638 24.68619188 0.874721392 0.924552942 0.037649201 0.079424981 1859.818496 2636081.837 0.036026446 0.020732457 5.70E-08 7.244022638 0.04983155 ALGS(ph)PTLK ddPTM_HeLa_A486_30min_R1 2 ALGSPTLK 8 0 Q8TC76 Q8TC76 FAM110B Protein FAM110B 1 0 ALGS(0.936)PT(0.064)LK;ALGS(0.908)PT(0.092)LK ; 109.66 0.0012428 122145000 687660 712500 370120 307910 662490 734640 931010 844430 573180 985060 TRUE FALSE FALSE 639458.5851 656038.9051 513440.3762 716830.0409 579394.3267 644007.5861 698061.4508 652171.7228 622863.7039 738394.5643 0.866012043 0.888466596 0.695346907 0.970795393 0.784667649 0.872172707 0.945377288 0.883229312 0.84353777 1 19.49403241 -6.525839989 23.6349905 0.908372339 0.841365751 0.179015603 0.076625601 90.89578732 725444.0575 0.027940338 0.021785913 2.98E-07 6.525839989 -0.067006589 ALGVISNFQS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 ALGVISNFQSSPK 13 0 Q6N039;E9PC87;O94876-2;O94876 Q6N039 DKFZp686H13261;TMCC1 Transmembrane and coiled-coil domains protein 1 1 0 ALGVISNFQS(0.5)S(0.5)PK 102.62 0.00059534 71697000 206320 184920 105260 305070 150460 152090 240020 238090 134720 642350 TRUE FALSE FALSE 252215.1722 206544.7854 144200.0542 321735.2016 135479.6741 160053.1972 188737.7662 179698.0542 161757.0683 482223.9666 0.523024963 0.42831713 0.299031289 0.667190401 0.280947617 0.331906351 0.391390265 0.372644387 0.335439712 1 18.87934383 -10.17582983 3.858825526 1.000391243 0.40179717 0.725471231 0.110111181 102428435.4 186684234.1 499213.7123 0.026579879 6.67E-11 10.17582983 -0.598594073 ALGVISNFQS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 ALGVISNFQSSPK 13 0 Q6N039;E9PC87;O94876-2;O94876 Q6N039 DKFZp686H13261;TMCC1 Transmembrane and coiled-coil domains protein 1 1 0 ALGVIS(0.012)NFQS(0.494)S(0.494)PK 59.57 0.031364 58096000 221070 210510 110880 112800 162280 204980 253920 198570 176430 388440 TRUE FALSE FALSE 205574.1346 193828.4209 153815.7055 262604.1006 141925.3292 179691.6517 190386.5303 153359.9458 191723.0945 291172.0957 0.706022787 0.665683367 0.528263895 0.901886219 0.487427646 0.617132117 0.653862555 0.526698636 0.658452844 1 18.15151258 -8.049889539 23.08153601 1.000000001 0.634385599 0.490301948 0.110815158 5165.335505 2389752.934 0.10261853 0.026495991 8.91E-09 8.049889539 -0.365614402 ALGVLAQLIWSR ddPTM_HeLa_A485_30min_R1 2 ALGVLAQLIWSR 12 0 H0YIC4;A0A0C4DGI3;B4DJV2;O75390 H0YIC4 CS "Citrate synthase;Citrate synthase, mitochondrial" 0 0 ; ; 164.64 1.03E-05 18826100 9638 12300.3 13960.1 11317.9 12228.1 9810.8 11360.8 9044.5 9724.3 21549.7 FALSE FALSE TRUE 11781.93985 13738.71309 19124.52192 11936.16822 11010.62743 10324.47832 8933.472271 6826.322194 11675.87781 16177.75638 0.728280212 0.849234762 1.182149209 0.737813572 0.68060287 0.638189751 0.552207121 0.421957287 0.721724171 1 13.98172392 -5.504414191 14.62152036 0.639753758 0.920689925 0.284535132 0.174285865 4.068713568 3219.964107 0.0494433 0.070807328 3.13E-06 5.504414191 0.280936167 ALGVLAQLIWSR ddPTM_HeLa_A486_30min_R1 2 ALGVLAQLIWSR 12 0 H0YIC4;A0A0C4DGI3;B4DJV2;O75390 H0YIC4 CS "Citrate synthase;Citrate synthase, mitochondrial" 0 0 ; ; 166.55 8.40E-06 19327500 10416.6 17525 11868 5319.4 16403.2 13705.7 16574 15040.7 13797.6 13695.1 FALSE FALSE TRUE 9686.450131 16136.25518 16463.60744 12383.83203 14345.7577 12014.83008 12427.0099 11616.26095 14993.58708 10265.75782 0.943568931 1.571852313 1.603740096 1.206324194 1.397437769 1.170379264 1.210530203 1.131554158 1.460543619 1 13.32555251 -6.261455018 24.55327557 1.203819129 1.36392703 0.114481945 0.204264775 2.436239322 3820292.625 0.068722186 0.064552772 5.48E-07 6.261455018 0.160107901 ALHSFIT(ph)PPT(ph)TPQLR ddPTM_HeLa_A485_30min_R1 2 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 2 0 ALHSFIT(0.999)PPT(0.55)T(0.451)PQLR;ALHS(0.001)FIT(0.998)PPT(0.639)T(0.362)PQLR ; 99.891 0.00038061 270123000 72100 99388 104526 101386 102534 95764 131459 117234 101306 148033 TRUE FALSE FALSE 88138.39626 111010.562 143194.5171 106924.4605 92325.35494 100778.055 103371.7107 88482.17768 121637.185 111131.0974 0.793102905 0.998915376 1.288518879 0.962147076 0.830778756 0.906839375 0.930178079 0.796196382 1.094537783 1 16.76190305 -5.514396378 24.90986907 0.913715025 1.040932725 0.091118693 0.136247316 747.0827653 2193933.615 0.039885166 0.054195165 3.06E-06 5.514396378 0.1272177 ALHSFIT(ph)PPT(ph)TPQLR ddPTM_HeLa_A486_30min_R1 4 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 2 0 ALHSFIT(1)PPT(0.563)T(0.437)PQLR;ALHSFIT(0.999)PPT(0.552)T(0.448)PQLR;ALHSFIT(1)PPT(0.653)T(0.347)PQLR;ALHSFIT(1)PPT(0.73)T(0.27)PQLR ;;; 151.41 2.98E-08 590477000 243157 288334 278737 85328 340921 216411 249816 245952 260286 317801 TRUE FALSE FALSE 226112.95 265485.3637 386671.4312 198647.8962 298159.5092 189712.4111 187309.3945 189954.0987 282847.8001 238221.5611 0.949170801 1.114447251 1.623158834 0.833878744 1.251605891 0.796369608 0.78628229 0.797384157 1.187330814 1 17.86194447 -6.260745331 24.9949756 0.892860439 1.160459412 0.220937844 0.224452708 92.74777171 3340186.477 0.07632884 0.072064186 5.49E-07 6.260745331 0.267598973 ALHSFIT(ph)PPT(ph)TPQLRR ddPTM_HeLa_A485_30min_R1 2 ALHSFITPPTTPQLRR 16 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 2 0 ALHSFIT(1)PPT(0.626)T(0.374)PQLRR;ALHSFIT(0.999)PPT(0.553)T(0.448)PQLRR ; 135.28 3.12E-06 252872000 40846 80526 65322 33511 75479 87792 99830 121443 56252 48684 TRUE FALSE FALSE 49932.05178 89942.81522 89487.32608 35341.62108 67964.04574 92388.65337 78500.50496 91658.91383 67541.26043 36547.97476 1.366205709 2.460952099 2.448489326 0.966992598 1.859584455 2.527873404 2.147875648 2.507906784 1.848016501 1 15.15750384 -6.046443377 24.88988276 2.118792119 1.841495488 0.006238531 0.582017397 1434.375868 768705.7924 0.190644021 0.190650257 8.99E-07 6.046443377 -0.277296631 ALHSFIT(ph)PPT(ph)TPQLRR ddPTM_HeLa_A486_30min_R1 1 ALHSFITPPTTPQLRR 16 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 2 0 ALHSFIT(1)PPT(0.556)T(0.444)PQLRR 123.19 9.18E-06 77598000 31345 30311 31694 11496 47574 25212 36800 34527 25603 40461 TRUE FALSE FALSE 29147.87737 27909.04597 43966.76559 26763.26898 41606.82531 22101.59978 27592.25077 26665.95582 27822.28865 30329.30224 0.961046751 0.920200727 1.449646459 0.882422839 1.371835889 0.72872101 0.909755541 0.879214286 0.917340215 1 14.88842469 -6.279112853 24.99315651 0.880878948 1.111540471 0.283575568 0.182573683 1093.867655 1546901.742 0.06182971 0.054642624 5.26E-07 6.279112853 0.230661523 ALHSFIT(ph)PPTT(ph)PQLR ddPTM_HeLa_A485_30min_R1 2 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 2 0 ALHSFIT(1)PPT(0.287)T(0.713)PQLR;ALHSFIT(1)PPT(0.461)T(0.539)PQLR ; 132.14 9.88E-06 262091000 107059 116013 134034 121351 133485 133309 150809 134382 115235 158387 TRUE FALSE FALSE 130873.9052 129579.7112 183618.7542 127980.0979 120194.7647 140288.8531 118587.4252 101424.6038 138361.6075 118904.0358 1.100668319 1.089783962 1.544260066 1.076330984 1.010855215 1.179849382 0.997337259 0.852995469 1.16364097 1 16.85943816 -5.49928726 24.88965737 1.033245562 1.242876014 0.300595684 0.144351755 908.7218453 958725.9025 0.041162159 0.060622005 3.17E-06 5.49928726 0.209630452 ALHSFIT(ph)PPTTPQLR ddPTM_HeLa_A485_30min_R1 3 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 ALHSFIT(0.998)PPT(0.001)T(0.001)PQLR;ALHSFIT(1)PPTTPQLR;ALHSFIT(1)PPTTPQLR ;; 155.79 2.91E-08 3886880000 476320 630460 718110 482260 727150 564350 644400 644720 579830 665780 TRUE FALSE FALSE 582275.7407 704186.8127 983768.7721 508604.6427 654752.3928 593898.4933 506718.6757 486601.4091 696196.5625 499813.2988 1.16498649 1.408899712 1.968272502 1.017589256 1.309993941 1.188240679 1.013815913 0.97356635 1.392913242 1 18.93102976 -5.32262073 24.99999872 1.132248845 1.503545203 0.378979839 0.226289522 246.352617 100664.2734 0.063993318 0.094917445 4.76E-06 5.32262073 0.371296358 ALHSFIT(ph)PPTTPQLR ddPTM_HeLa_A486_30min_R1 2 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 ALHSFIT(1)PPTTPQLR;ALHSFIT(1)PPTTPQLR ; 160.43 9.48E-12 2783500000 447210 477790 381590 153398 513830 425990 456950 464800 411880 516150 TRUE FALSE FALSE 415862.8884 439928.1803 529351.8673 357118.2963 449380.6501 373435.6849 342616.2769 358975.1865 447582.09 386902.6804 1.074851402 1.13705126 1.368178341 0.923018408 1.16148239 0.965192809 0.885536064 0.927817781 1.156833779 1 18.5616112 -5.2829993 24.98102423 0.999986363 1.187729468 0.380236322 0.111353258 828.4272176 959879.423 0.031896298 0.047361182 5.21E-06 5.2829993 0.187743105 ALIAAQYSGAQVR ddPTM_HeLa_A485_30min_R1 2 ALIAAQYSGAQVR 13 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 182.93 1.81E-09 81489000 77898 93727 127494 101309 147567 93893 126116 128406 105583 146482 FALSE FALSE TRUE 95226.14136 104687.5573 174659.3361 106843.2541 132874.7113 98809.09229 99170.28633 96914.22717 126772.5396 109966.7332 0.865954081 0.951992974 1.588292486 0.971596146 1.208317347 0.898536216 0.901820791 0.881304958 1.152826277 1 16.74670762 -6.26665336 24.87979328 0.955411903 1.126130039 0.12314172 0.198696777 860.0208036 4103788.821 0.070287444 0.063810333 5.41E-07 6.26665336 0.170718136 ALIAAQYSGAQVR ddPTM_HeLa_A486_30min_R1 2 ALIAAQYSGAQVR 13 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 281.13 3.79E-51 70612000 65344 96995 93055 30410 117613 88934 103656 100081 84666 87582 FALSE FALSE TRUE 60763.72304 89308.76295 129088.3881 70796.01684 102860.8808 77962.22729 77720.17244 77294.74105 92004.91705 65650.89714 0.925558152 1.360358607 1.966285211 1.078370897 1.566785609 1.187527219 1.183840219 1.177360012 1.401426653 1 16.00252711 -6.302939796 24.406321 1.200728821 1.394282844 0.103928024 0.275531354 934.4484478 549544.5296 0.097139855 0.085670191 4.98E-07 6.302939796 0.193554023 ALIEVLQPLIAEHQAR ddPTM_HeLa_A485_30min_R1 1 ALIEVLQPLIAEHQAR 16 0 P23381;P23381-2 P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS" 0 0 80.632 0.013208 19059000 13959 19896 22140 16943 20629 19721 21833 26528 16271 20888 FALSE FALSE TRUE 17064.13139 22222.66413 30330.50732 17868.55319 18575.10433 20753.56107 17168.20119 20021.96641 19536.44045 15681.00602 1.088203868 1.417170818 1.934219481 1.139502987 1.184560755 1.323484032 1.094840546 1.276829203 1.245866524 1 13.9367305 ALIEVLQPLIAEHQAR ddPTM_HeLa_A486_30min_R1 2 ALIEVLQPLIAEHQAR 16 0 P23381;P23381-2 P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS" 0 0 ; ; 116.35 0.00039759 36985000 41927 51859 42960 19045.6 71156 42257 48286 47927 41548 48174 FALSE FALSE TRUE 38988.13381 47749.50397 59595.26251 44339.11931 62230.95098 37043.76098 36204.33208 37015.06834 45149.41409 36110.91684 1.079677206 1.32230107 1.650339225 1.22785914 1.723327914 1.025832746 1.002586898 1.025038176 1.250298194 1 15.14014743 -6.304808402 24.99524085 1.058680699 1.400611985 0.45146889 0.187350644 438.3260832 252622.9481 0.06511595 0.057427236 4.96E-07 6.304808402 0.341931286 ALIQTCLNSPDS(ph)PPR ddPTM_HeLa_A485_30min_R1 6 ALIQTCLNSPDSPPR 15 0 P11831 P11831 SRF Serum response factor 1 0 ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNS(0.018)PDS(0.982)PPR;ALIQTCLNSPDS(1)PPR ;;;;; 258.92 2.43E-50 1390027000 535829 547988 623928 544064 635706 517789 575048 550752 547917 723912 TRUE FALSE FALSE 655022.3125 612070.4297 854744.931 573784.8387 572412.8785 544899.6314 452184.2971 415679.2085 657878.9161 543454.061 1.205294724 1.126259741 1.572800706 1.055811116 1.053286597 1.002659968 0.832056156 0.764883802 1.210551109 1 19.05179856 -5.49568092 15.60468032 0.968130842 1.289004001 0.464569476 0.15559119 6.303495241 3615.439049 0.044650306 0.065467623 3.19E-06 5.49568092 0.320873159 ALIQTCLNSPDS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 ALIQTCLNSPDSPPR 15 0 P11831 P11831 SRF Serum response factor 1 0 ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR;ALIQTCLNSPDS(1)PPR ;;; 270.78 3.47E-52 734096000 391141 483882 380178 152792 427273 399782 421027 417421 398317 404201 TRUE FALSE FALSE 363724.0358 445537.4281 527393.1031 355707.4977 373680.4362 350460.9615 315681.5914 322383.3505 432843.4383 302986.4387 1.200463088 1.470486369 1.740649203 1.174004682 1.233323966 1.156688606 1.041900069 1.064019076 1.428590138 1 18.2088937 -5.400735285 10.07838895 1.156519921 1.470323331 0.431902848 0.164933268 0.373423154 29.16153275 0.046623286 0.069169678 3.97E-06 5.400735285 0.31380341 ALIQTCLNSPDS(ph)PPRSDPTTDQR ddPTM_HeLa_A485_30min_R1 8 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 0 ALIQTCLNS(0.001)PDS(0.996)PPRS(0.003)DPTTDQR;ALIQTCLNSPDS(0.999)PPRS(0.001)DPTTDQR;ALIQTCLNSPDS(1)PPRSDPTTDQR;ALIQTCLNSPDS(1)PPRSDPTTDQR;ALIQTCLNS(0.002)PDS(0.998)PPRSDPTTDQR;ALIQTCLNS(0.001)PDS(0.998)PPRSDPTTDQR;ALIQTCLNSPDS(0.988)PPRS(0.011)DPTTDQR;ALIQTCLNS(0.001)PDS(0.966)PPRS(0.034)DPTTDQR ;;;;;;; 247.61 1.92E-49 10107240000 1062912 1666692 1710060 1187345 2028426 1591103 1911387 2105647 1639189 1722248 TRUE FALSE FALSE 1299353.107 1861597.131 2342682.356 1252206.651 1826468.785 1674410.693 1503003.553 1589233.772 1968159.197 1292923.269 1.004973101 1.439835739 1.811926826 0.968508094 1.412666033 1.295058054 1.162484726 1.229178722 1.522255221 1 20.30220523 -5.288440025 24.99431529 1.244576723 1.42100462 0.115102379 0.240244196 1714.565844 1587158.269 0.067090381 0.099539458 5.15E-06 5.288440025 0.176427897 ALIQTCLNSPDS(ph)PPRSDPTTDQR ddPTM_HeLa_A486_30min_R1 6 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 0 ALIQTCLNSPDS(0.999)PPRS(0.001)DPTTDQR;ALIQTCLNSPDS(1)PPRSDPTTDQR;ALIQTCLNSPDS(0.999)PPRS(0.001)DPTTDQR;ALIQTCLNSPDS(0.998)PPRS(0.001)DPTTDQR;ALIQTCLNSPDS(0.999)PPRSDPTTDQR;ALIQTCLNS(0.001)PDS(0.996)PPRS(0.002)DPT(0.001)T(0.001)DQR ;;;;; 233.78 3.11E-40 8722720000 1427526 1684277 1636675 535658 2298185 1476597 1702744 1903836 1443650 1660888 TRUE FALSE FALSE 1327463.799 1550808.756 2270439.392 1247038.895 2009925.208 1294429.475 1276699.441 1470374.103 1568786.744 1244990.834 1.066243833 1.245638694 1.823659524 1.001645041 1.614409642 1.039710044 1.025468948 1.181032071 1.260078951 1 20.24770369 -6.299645495 24.96928377 1.107835661 1.351429818 0.217044397 0.23635169 903.6204501 590550.6858 0.081717034 0.072069308 5.02E-07 6.299645495 0.243594157 ALIQYFSPYVSADMHR ddPTM_HeLa_A486_30min_R1 1 ALIQYFSPYVSADMHR 16 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0;Q13098-6 C9JFE4 GPS1 COP9 signalosome complex subunit 1 0 0 67.646 0.017397 8948800 11336 12815 12528 4366.5 16442 11143 12228 12645 13403 10350 FALSE FALSE TRUE 10541.40494 11799.49273 17379.17711 10165.43267 14379.69104 9768.289954 9168.425065 9766.009538 14564.78283 7758.292633 1.358727421 1.520887815 2.240077545 1.310266724 1.853460771 1.259077276 1.181758088 1.258783343 1.877318054 1 12.92152348 -6.275425818 24.45202275 1.323209462 1.662305166 0.217465609 0.32345381 982.5945366 1717831.41 0.11235695 0.099607949 5.30E-07 6.275425818 0.339095704 ALIRS(ph)PSLAK ddPTM_HeLa_A485_30min_R1 2 ALIRSPSLAK 10 1 Q5SW96 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 1 0 ALIRS(0.98)PS(0.02)LAK;ALIRS(0.993)PS(0.007)LAK ; 124.12 5.92E-05 472860000 463250 671550 540020 555660 1123730 977470 1225670 1747210 631210 855860 TRUE FALSE FALSE 566298.3643 750081.9308 739795.8701 586014.2988 1011847.496 1028648.818 963795.5917 1318704.008 757888.0572 642509.8529 0.881384716 1.167424791 1.151415604 0.912070525 1.574835765 1.600985281 1.500047956 2.052426125 1.179574218 1 19.29335905 -5.768805738 24.9896989 1.543853445 1.046837651 0.384704419 0.276456104 153.9623634 522302.2751 0.080987976 0.093656396 1.70E-06 5.768805738 -0.497015794 ALIRS(ph)PSLAK ddPTM_HeLa_A486_30min_R1 2 ALIRSPSLAK 10 1 Q5SW96 Q5SW96 LDLRAP1 Low density lipoprotein receptor adapter protein 1 1 0 ALIRS(0.845)PS(0.155)LAK;ALIRS(0.99)PS(0.01)LAK ; 100.22 0.00027211 241580000 975300 939070 925730 595200 1955210 1097860 1511200 1723170 803760 1310880 TRUE FALSE FALSE 906936.5065 864654.6732 1284197.448 1385655.68 1709969.33 962417.1954 1133081.776 1330841.808 873430.564 982627.1156 0.922971178 0.8799418 1.306902107 1.410154124 1.740201652 0.979432768 1.153114705 1.354371141 0.888872849 1 19.90628453 -10.59249521 6.482389248 0.99954808 1.198000155 0.037758054 0.26409306 0.001821981 0.000114536 0.270104465 0.065363751 2.56E-11 10.59249521 0.198452075 ALIVLAHSER ddPTM_HeLa_A485_30min_R1 3 ALIVLAHSER 10 0 B4DLR8;P15559-3;P15559-2;P15559;H3BRK3 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 ;; ;; 163.94 3.71E-06 318138000 110416 157480 195649 142983 196837 151217 158328 180638 175336 198692 FALSE FALSE TRUE 134977.6583 175895.9161 268027.7067 150793.7992 177239.2171 159134.4883 124499.9294 136336.2473 210524.3269 149161.7411 0.904908037 1.179229438 1.796893123 1.010941533 1.188235106 1.066858614 0.834663959 0.914016197 1.411382875 1 17.18651802 ALIVLAHSER ddPTM_HeLa_A486_30min_R1 2 ALIVLAHSER 10 0 B4DLR8;P15559-3;P15559-2;P15559;H3BRK3 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 ; ; 178.22 1.95E-09 106329000 119508 162200 147357 37434 178720 129717 153518 149382 132022 142169 FALSE FALSE TRUE 111131.1063 149346.6813 204417.5768 87148.24381 156303.2711 113713.8354 115106.1727 115370.9796 143465.7733 106568.957 1.042809364 1.401408866 1.918171881 0.81776388 1.466686692 1.067044649 1.080109779 1.08259462 1.346224804 1 16.70142772 -5.279698701 24.99826512 1.136571239 1.448858035 0.254279661 0.25914062 1152.142918 1577360.114 0.071923736 0.106916997 5.25E-06 5.279698701 0.312286796 ALKEPPRDR ddPTM_HeLa_A485_30min_R1 2 ALKEPPRDR 9 2 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 0 ; ; 82.287 0.026096 916086900 1014086 1255067 1136111 913131 1563343 1565154 1737679 2164407 1243441 1267384 FALSE FALSE TRUE 1239665.932 1401836.168 1556405.736 963013.0344 1407691.082 1647103.043 1366409.686 1633582.79 1492988.203 951448.4933 1.302924899 1.473370527 1.635827633 1.012154669 1.479524211 1.731153136 1.436136266 1.716942957 1.569173963 1 19.85976603 -5.989293403 24.99918757 1.540220913 1.367106923 0.048240119 0.241828355 515.0894931 1202691.402 0.072131299 0.081717134 1.02E-06 5.989293403 -0.17311399 ALKEPPRDR ddPTM_HeLa_A486_30min_R1 2 ALKEPPRDR 9 2 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 0 ; ; 68.893 0.012814 715499000 993280 1081240 901970 488796 1553630 1137710 1512730 1484020 989180 1561270 FALSE FALSE TRUE 923656.2013 995558.6046 1251236.94 1137941.79 1358759.238 997350.9076 1134228.954 1146141.042 1074922.919 1170317.83 0.789235349 0.850673705 1.06914285 0.972335686 1.161017293 0.852205172 0.969163184 0.979341691 0.918488031 1 20.15846895 -4.606733716 5.715811941 0.988847955 0.803649391 0.43986112 0.078079947 0.166159816 8.494644256 0.019903219 0.055029354 2.47E-05 4.606733716 -0.185198564 ALLETAS(ph)PR ddPTM_HeLa_A485_30min_R1 6 ALLETASPR 9 0 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 0 ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR;ALLET(0.001)AS(0.999)PR ;;;;; 159.12 1.89E-05 1888886000 1003282 1451430 1608710 1140945 1671740 1320659 1508606 1491530 1351032 1567760 TRUE FALSE FALSE 1226458.62 1621162.113 2203838.773 1203271.936 1505295.696 1389806.663 1186280.004 1125729.929 1622171.73 1176946.284 1.042068475 1.377430843 1.872505825 1.02236776 1.278984195 1.180858193 1.007930455 0.956483693 1.378288671 1 20.16661705 ALLETAS(ph)PR ddPTM_HeLa_A486_30min_R1 5 ALLETASPR 9 0 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 0 ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR ;;;; 168.59 7.56E-06 1826250000 542967 716699 643539 211874 831453 594706 666449 674195 616703 619989 TRUE FALSE FALSE 504907.8172 659905.1611 892734.5354 493253.3795 727164.4117 521337.2202 499696.4112 520695.5161 670159.3126 464739.7189 1.086431386 1.41994569 1.920934448 1.061354043 1.564670249 1.121783224 1.075217785 1.120402442 1.442009979 1 18.82606342 -6.277459158 24.32177446 1.154616257 1.420124537 0.210312911 0.25036484 940.5613348 1427987.259 0.087699237 0.077603211 5.28E-07 6.277459158 0.265508279 ALLFIPR ddPTM_HeLa_A485_30min_R1 3 ALLFIPR 7 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;; ;; 136.19 0.0045855 68515000 152847 184247 190693 187954 238207 186643 231254 221762 198197 264002 FALSE FALSE TRUE 186847.2878 205793.0839 261238.2761 198221.4511 214490.2747 196415.3389 181844.6937 167374.5218 237973.3199 198191.16 0.942762976 1.038356524 1.318112655 1.000152838 1.082239363 0.991039857 0.917521719 0.844510531 1.200726208 1 17.59653309 -6.288253354 3.839859723 0.974722254 1.084473292 0.097822876 0.124860714 0.477019215 15.657239 0.045528316 0.041534888 5.15E-07 6.288253354 0.109751039 ALLFIPR ddPTM_HeLa_A486_30min_R1 3 ALLFIPR 7 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;; ;; 119.23 0.0045997 53779000 116524 118654 98775 65762 170330 126829 142003 137063 104482 150245 FALSE FALSE TRUE 108356.2693 109251.4249 137023.3253 153097.2594 148965.6231 111182.1275 106472.3474 105856.747 113538.5839 112622.6741 0.962117711 0.970065982 1.216658425 1.359382209 1.322696556 0.987209089 0.945389979 0.939923935 1.008132553 1 16.78113779 -6.405133118 8.467567538 0.968121591 1.168607056 0.378186189 0.121842764 0.37819898 25.07202674 0.04961404 0.043690153 3.93E-07 6.405133118 0.200485466 ALLFVPR ddPTM_HeLa_A485_30min_R1 1 ALLFVPR 7 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 126.05 0.0033614 0 39384 54492 51697 59261 66385 54677 61435 62967 46800 73484 FALSE FALSE TRUE 48144.83493 60864.36538 70821.87159 62498.27837 59775.47631 57539.80317 48308.91037 47524.24452 56192.33072 55165.79117 0.872729891 1.103299057 1.283800524 1.132917285 1.083560573 1.043034133 0.875704116 0.86148034 1.018608263 1 15.7514863 -6.557449112 3.648643964 0.927980377 1.106236887 0.327992958 0.104121174 0.25938556 7.352698337 0.043499955 0.03398928 2.77E-07 6.557449112 0.17825651 ALLLLCGEDD ddPTM_HeLa_A485_30min_R1 4 ALLLLCGEDD 10 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 ;;; ;;; 231.74 4.26E-16 79516000 136770 169419 214505 159765 249110 173397 196522 199941 189325 209264 FALSE FALSE TRUE 167194.0146 189231.0783 293859.3258 168492.5574 224307.7337 182475.7988 154533.4693 150905.1563 227320.7909 157098.336 1.064263435 1.204539036 1.870543847 1.07252923 1.427817375 1.161538711 0.983673495 0.960577687 1.446996809 1 17.26130837 -6.434547842 5.301257818 1.091490802 1.335831165 0.16313158 0.248706843 0.410454169 18.70447514 0.089789048 0.078100249 3.68E-07 6.434547842 0.244340363 ALLLLCGEDD ddPTM_HeLa_A486_30min_R1 4 ALLLLCGEDD 10 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 ;;; ;;; 202.2 3.64E-12 95014000 142964 204795 184016 73602.6 246449 165455 187643 194901 167530 183011 FALSE FALSE TRUE 132942.9619 188566.2983 255271.9233 171350.5725 215537.0684 145042.8443 140692.7367 150526.297 182051.6353 137183.8544 0.969086067 1.374551686 1.860801509 1.249057866 1.571154779 1.057288009 1.025577954 1.097259569 1.327063131 1 17.06575117 -6.273650281 24.66431994 1.1027752 1.419909267 0.305593309 0.228183483 816.0720844 1648346.763 0.081578838 0.072484568 5.33E-07 6.273650281 0.317134067 ALLLLLVGGVDQS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ALLLLLVGGVDQSPR 15 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 1 0 ALLLLLVGGVDQS(1)PR 95.067 0.0005006 0 16959 20250 21673 11548 31118 24000 24315 23929 20163 20186 TRUE FALSE FALSE 15770.26168 18645.31625 30065.36602 26884.3276 27214.89028 21039.12401 18231.12982 18480.88907 21910.74507 15131.29421 1.04222821 1.232235392 1.986965927 1.776736823 1.798583115 1.390437838 1.204862556 1.221368695 1.448041705 1 13.88524777 -6.509794974 5.849028174 1.243257263 1.585598122 0.25792252 0.276846713 0.261937822 33.2555455 0.112050294 0.092677683 3.09E-07 6.509794974 0.342340859 ALLLLLVGGVDQSPR ddPTM_HeLa_A485_30min_R1 2 ALLLLLVGGVDQSPR 15 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 258.48 1.98E-40 32181000 39883 58369 57492 43327 65782 46180 59836 62114 41689 57916 FALSE FALSE TRUE 48754.83576 65194.74681 78760.68324 45693.8443 59232.51311 48597.91339 47051.54978 46880.44411 50055.59991 43478.60706 1.121352294 1.499467237 1.811481291 1.050950051 1.362336954 1.117743108 1.082177028 1.078241629 1.151269631 1 15.4080181 -5.803310473 1.380391965 1.092455363 1.450941538 0.352350164 0.195250007 0.461590411 1.839488519 0.077072273 0.103709365 1.57E-06 5.803310473 0.358486175 ALLLLLVGGVDQSPR ddPTM_HeLa_A486_30min_R1 2 ALLLLLVGGVDQSPR 15 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 288.35 2.06E-65 34794000 56318 62646 60550 32165 81767 57866 69562 70561 56338 65251 FALSE FALSE TRUE 52370.39903 57681.70281 83996.58159 74881.74553 71511.02041 50727.08126 52156.85185 54495.80064 61221.4232 48911.72489 1.070712578 1.17930216 1.717309741 1.530956958 1.462042498 1.037114953 1.066346606 1.114166404 1.251671728 1 15.57789272 -6.260742898 24.9996667 1.099275749 1.406030043 0.410433707 0.178250601 71.0815849 2551445.662 0.066417148 0.062670096 5.49E-07 6.260742898 0.306754294 ALLPLELQDDGS(ph)DSRK ddPTM_HeLa_A485_30min_R1 2 ALLPLELQDDGSDSRK 16 1 A0A1W2PPT2;Q15906;Q15906-2 A0A1W2PPT2 VPS72 Vacuolar protein sorting-associated protein 72 homolog 1 0 ALLPLELQDDGS(0.811)DS(0.189)RK;ALLPLELQDDGS(0.969)DS(0.031)RK ; 104.63 0.00015937 65034000 48434 51238 57929 80841 75541 66735 93112 96911 51268 121223 TRUE FALSE FALSE 59207.9762 57229.83839 79359.34773 85257.13913 68019.8728 70229.14141 73217.86054 73143.4253 61557.01734 91004.33704 0.650606093 0.628869351 0.872039183 0.936846989 0.747435507 0.771712027 0.804553529 0.803735598 0.676418502 1 16.47364768 -11.54402314 2.235948934 4.756247303 0.7718189 0.368071727 0.091755944 6321618.78 301204.4964 121923249.1 0.024561951 2.86E-12 11.54402314 -3.984428403 ALLPLELQDDGS(ph)DSRK ddPTM_HeLa_A486_30min_R1 1 ALLPLELQDDGSDSRK 16 1 A0A1W2PPT2;Q15906;Q15906-2 A0A1W2PPT2 VPS72 Vacuolar protein sorting-associated protein 72 homolog 1 0 ALLPLELQDDGS(0.835)DS(0.165)RK 76.768 0.0033126 32390000 28996 26030 18667 14507 30266 32604 39894 34232 20945 46179 TRUE FALSE FALSE 26963.53014 23967.288 25895.36232 33773.02914 26469.75606 28581.64997 29912.09924 26438.12088 22760.52946 34615.47783 0.778944329 0.692386456 0.74808623 0.975662659 0.764679783 0.825689887 0.864124985 0.76376588 0.657524636 1 15.07912964 -11.46602218 2.317172245 3.528795295 0.789617367 0.36563436 0.084555746 5497847.665 505560.3862 74511140.11 0.023133541 3.42E-12 11.46602218 -2.739177928 ALLQS(ph)SASR ddPTM_HeLa_A486_30min_R1 1 ALLQSSASR 9 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 ALLQS(0.787)S(0.21)AS(0.003)R 80.706 0.0077362 121560000 229250 248300 218250 242040 302180 285050 411940 370190 209850 650260 TRUE FALSE FALSE 213180.7588 228623.8037 302762.2449 563481.352 264277.7667 249883.4292 308868.2549 285905.8182 228039.967 487430.6635 0.437356069 0.469038616 0.621139103 1.156023603 0.542185354 0.512654307 0.633666033 0.586556898 0.467840832 1 18.89483749 -11.02903127 2.297732034 1.452598951 0.611783713 0.269041319 0.195854826 20626945.4 7023121.008 49183984.38 0.053606069 9.35E-12 11.02903127 -0.840815239 ALLQSS(ph)ASR ddPTM_HeLa_A485_30min_R1 3 ALLQSSASR 9 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 ALLQS(0.002)S(0.998)ASR;ALLQS(0.027)S(0.973)ASR;ALLQS(0.039)S(0.961)ASR ;; 139.32 0.00014546 663660000 914580 1281160 1351730 982300 1600870 1184510 1356300 1632830 1195780 1212250 TRUE FALSE FALSE 1118025.166 1430980.517 1851791.177 1035960.562 1441481.762 1246529.112 1066515.425 1232375.882 1435762.078 910058.3848 1.228520262 1.572405179 2.034804808 1.138345164 1.583944268 1.369724331 1.171919783 1.354172329 1.577659304 1 19.79559958 -5.932040411 1.288738945 1.309715416 1.564475272 0.136183728 0.264664614 0.924286917 3.209710134 0.112636721 0.136122074 1.17E-06 5.932040411 0.254759856 ALLQSS(ph)ASR ddPTM_HeLa_A486_30min_R1 3 ALLQSSASR 9 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 ALLQS(0.002)S(0.998)ASR;ALLQS(0.002)S(0.998)ASR;ALLQS(0.382)S(0.617)AS(0.002)R ;; 169.21 3.25E-09 340310000 1056700 1350190 1335290 503830 1643630 1221620 1386400 1444830 1097050 1376270 TRUE FALSE FALSE 982630.7868 1243196.027 1852350.048 1172941.702 1437470.599 1070908.945 1039508.056 1115873.749 1192143.177 1031643.034 0.952491079 1.205064142 1.795533908 1.13696469 1.393379834 1.038061529 1.007623783 1.081647152 1.155577208 1 19.97651243 -6.270591555 24.00899003 1.058624974 1.310436873 0.250686501 0.20685998 569.8000368 1494756.307 0.074301546 0.066489043 5.36E-07 6.270591555 0.251811899 ALLS(ph)PFS(ph)TPVR ddPTM_HeLa_A485_30min_R1 1 ALLSPFSTPVR 11 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 2 0 ALLS(0.999)PFS(0.949)T(0.052)PVR 94.191 0.0046025 18998000 46348 53312 57119 46515 76302 48792 55483 65035 50470 60353 TRUE FALSE FALSE 56657.9527 59546.37465 78249.69502 49055.99667 68705.10497 51346.67367 43628.6038 49085.06428 60598.86606 45308.10781 1.250503617 1.314254281 1.727057226 1.082720048 1.516397578 1.13327782 0.962931491 1.083361602 1.337483929 1 15.46748162 -6.375798867 6.48357034 1.096009028 1.376904883 0.361769741 0.182834909 0.276904364 13.94713764 0.063776326 0.056055354 4.21E-07 6.375798867 0.280895855 ALLS(ph)PFS(ph)TPVR ddPTM_HeLa_A486_30min_R1 2 ALLSPFSTPVR 11 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 2 0 ALLS(1)PFS(0.806)T(0.194)PVR;ALLS(0.999)PFS(0.739)T(0.261)PVR ; 146.07 1.86E-06 19747000 90459 111422 106875 36347 140629 101736 111828 128536 94212 104416 TRUE FALSE FALSE 84118.29123 102592.5149 148259.8622 84617.65288 122989.9995 89184.8467 83847.4516 99271.15872 102378.372 78269.55397 1.074725573 1.310758906 1.894221376 1.081105597 1.571364512 1.13945771 1.071265228 1.268324063 1.308022939 1 16.2561636 -6.289581922 24.53119817 1.168799907 1.393478565 0.18962045 0.235916338 1049.119652 914489.4101 0.082812392 0.073048952 5.13E-07 6.289581922 0.224678658 ALLS(ph)PFST(ph)PVR ddPTM_HeLa_A486_30min_R1 1 ALLSPFSTPVR 11 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 2 0 ALLS(1)PFS(0.038)T(0.962)PVR 146.79 2.21E-06 23205000 65446 73879 67546 30799 92059 68759 72617 78434 58578 71954 TRUE FALSE FALSE 60858.57336 68024.55898 93701.62014 71701.6285 80512.1018 60276.21367 54447.45854 60576.2904 63655.5882 53936.25006 1.128342688 1.261202974 1.737266125 1.329377337 1.492727094 1.117545502 1.009478013 1.123109047 1.18020048 1 15.7189676 -6.323215151 6.711876638 1.086989767 1.398301192 0.485256123 0.156363018 0.228450018 20.64765286 0.057463711 0.050737854 4.75E-07 6.323215151 0.311311425 ALLS(ph)PFSTPVR ddPTM_HeLa_A486_30min_R1 1 ALLSPFSTPVR 11 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 ALLS(0.997)PFS(0.003)TPVR 134.49 0.00012341 0 104030 103890 94326 53600 123790 116050 129290 123000 89893 142140 TRUE FALSE FALSE 96738.03421 95657.37804 130851.5533 124783.5088 108263.1039 101732.9309 96940.27451 94995.58507 97684.99762 106547.2188 0.907935799 0.897793289 1.228108577 1.171156884 1.016104457 0.954815452 0.909833927 0.891582025 0.916823533 1 16.70113341 -6.26048036 3.119047971 0.922933113 1.055946865 0.237060976 0.098911279 0.391384332 7.837570123 0.040108791 0.037342152 5.49E-07 6.26048036 0.133013751 ALLSLRS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ALLSLRSPK 9 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 ALLSLRS(1)PK;ALLS(0.001)LRS(0.999)PK ; 108.9 0.00048231 7947200000 1431990 1341250 1061020 2230200 1986450 1517760 2479000 2578600 1303960 2876700 TRUE FALSE FALSE 1750531.235 1498097.52 1453535.451 2352030.179 1788672.063 1597227.567 1949341.398 1946194.307 1565652.811 2159591.632 0.810584376 0.693694816 0.673060327 1.089108767 0.828245506 0.739597035 0.902643523 0.901186261 0.724976328 1 21.0423271 -13.99999996 0.023419488 2.089653768 3.41E-08 0.163692276 0.118805891 4629.702607 8.175859368 517.2137976 254.9730975 1.00E-14 13.99999996 -2.089653734 ALLSLRS(ph)PK ddPTM_HeLa_A486_30min_R1 2 ALLSLRSPK 9 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 ALLSLRS(1)PK;ALLSLRS(1)PK ; 116.13 0.00031423 10174800000 1975270 2052060 1445508 1360771 2332020 2483290 3537990 3343730 1837210 3375700 TRUE FALSE FALSE 1836813.773 1889447.292 2005247.41 3167943.658 2039516.306 2176926.928 2652747.481 2582435.672 1996460.842 2530402.748 0.725897794 0.746698245 0.792461758 1.251952346 0.80600462 0.860308475 1.048349905 1.0205631 0.788989359 1 21.2709356 -5.022420773 24.92378365 0.965697839 0.744618429 0.376248453 0.126944617 733.3249518 815193.0063 0.034016872 0.059541479 9.50E-06 5.022420773 -0.22107941 ALLSS(ph)PEGEEK ddPTM_HeLa_A485_30min_R1 1 ALLSSPEGEEK 11 0 A0A499FJI4;O75592-2;O75592;H7C3U4 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 ALLS(0.056)S(0.944)PEGEEK 136.38 2.02E-05 28583000 183910 159730 135280 269920 192740 186010 246180 210490 154470 343780 TRUE FALSE FALSE 224820.145 178409.034 185325.7015 284665.0461 173550.1288 195749.196 193581.6319 158866.9975 185470.7121 258081.9728 0.871119135 0.691288245 0.718088518 1.103002442 0.672461261 0.758476828 0.750078085 0.615567975 0.718650397 1 17.97746985 ALLT(ph)PVAIAAGR ddPTM_HeLa_A486_30min_R1 1 ALLTPVAIAAGR 12 0 P00390-5;P00390-4;P00390-2;P00390-3;P00390 P00390-5 GSR "Glutathione reductase, mitochondrial" 1 0 ALLT(1)PVAIAAGR 169.09 8.08E-10 22292000 63559 75750 69923 32920 84317 65822 76218 73775 61781 72862 TRUE FALSE FALSE 59103.84232 69747.29412 96999.0582 76639.42368 73741.17564 57701.55087 57147.45025 56978.043 67136.22682 54616.88095 1.08215338 1.277028144 1.775990436 1.403218609 1.350153549 1.056478324 1.046333098 1.04323136 1.22922118 1 15.73705931 -6.200343636 4.21109044 1.075021749 1.401251599 0.440115278 0.170318367 0.225217982 8.133627692 0.062091679 0.061032749 6.30E-07 6.200343636 0.32622985 ALMGS(ph)PQLVAAVVR ddPTM_HeLa_A485_30min_R1 2 ALMGSPQLVAAVVR 14 0 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 JUP Junction plakoglobin 1 0 ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR ; 213.02 1.38E-22 869100000 508420 599090 466100 484300 487610 558190 652790 596460 489250 899810 TRUE FALSE FALSE 621516.275 669148.3641 638529.786 510756.0827 439061.8363 587415.9653 513316.0837 450177.2498 587437.9873 675503.9268 0.92007796 0.990591376 0.945264359 0.756111197 0.649976734 0.86959667 0.759900962 0.666431729 0.869629271 1 19.36560463 -5.248730075 12.46081478 0.777532773 0.955873003 0.331015597 0.099212945 1.06024692 1033.062588 0.025843366 0.043410708 5.64E-06 5.248730075 0.17834023 ALMGS(ph)PQLVAAVVR ddPTM_HeLa_A486_30min_R1 2 ALMGSPQLVAAVVR 14 0 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 JUP Junction plakoglobin 1 0 ALMGS(1)PQLVAAVVR;ALMGS(1)PQLVAAVVR ; 165.45 2.75E-10 404230000 632200 674290 711990 246010 941510 711200 707730 700840 771710 873510 TRUE FALSE FALSE 587886.0447 620856.8047 987691.5958 572723.7127 823417.0366 623459.375 530648.4684 541274.0312 838602.4442 654777.4104 0.897841061 0.948195211 1.508438715 0.874684593 1.257552603 0.952169951 0.810425742 0.82665349 1.280744312 1 19.32064502 -6.407148849 22.54550577 0.952896779 1.100065985 0.073293762 0.212665468 24.04603732 4624.57199 0.074433115 0.065643776 3.92E-07 6.407148849 0.147169206 ALMLQGVDLLADAVAVTMGPK ddPTM_HeLa_A486_30min_R1 1 ALMLQGVDLLADAVAVTMGPK 21 0 P10809;E7EXB4;E7ESH4;P10809-2;C9JL19;C9JCQ4;C9JL25;C9J0S9 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 95.094 5.91E-05 2449500 7282 7224.3 6338.5 4332.1 9244.7 6645.7 7952.8 8812.2 7112.3 8446.5 FALSE FALSE TRUE 6771.569404 6651.820158 8792.936951 10085.34773 8085.143523 5825.821103 5962.925324 6805.854429 7728.799891 6331.441423 1.069514657 1.050601232 1.388773324 1.592899161 1.276983073 0.920141357 0.941795861 1.0749297 1.220701476 1 12.62831827 -6.241073207 21.7466469 1.030589495 1.287143959 0.35792196 0.163205527 190.8018755 203733.8625 0.060572871 0.060446696 5.74E-07 6.241073207 0.256554465 ALNFGLGRPLPLHFLR ddPTM_HeLa_A485_30min_R1 2 ALNFGLGRPLPLHFLR 16 1 H0YA62;E9PC90;P14635-2;P14635 H0YA62 CCNB1 G2/mitotic-specific cyclin-B1 0 0 ; ; 234.85 8.11E-33 83600000 103314 127357 143675 100637 131819 124127 157127 164308 93992 131570 FALSE FALSE TRUE 126295.8429 142250.2933 196826.3613 106134.5445 118694.6375 130626.0978 123555.5328 124011.2054 112855.3323 98772.02037 1.278660114 1.44018815 1.992733981 1.074540584 1.201703044 1.322501021 1.250916326 1.255529703 1.142584022 1 16.5918148 -6.522854159 0.332117957 1.01301898 1.566129799 0.284930786 0.220508554 2.495346045 0.642179411 0.299983383 0.500724308 3.00E-07 6.522854159 0.553110819 ALNFGLGRPLPLHFLR ddPTM_HeLa_A486_30min_R1 2 ALNFGLGRPLPLHFLR 16 1 H0YA62;E9PC90;P14635-2;P14635 H0YA62 CCNB1 G2/mitotic-specific cyclin-B1 0 0 ; ; 186.56 1.03E-13 79720000 51466 77701 76195 25368.6 91265 69658 84845 83471 73182 81828 FALSE FALSE TRUE 47858.49917 71543.68978 105699.7446 59059.38286 79817.69269 61064.30419 63615.8836 64466.47546 79525.47468 61337.73619 0.780245606 1.166389473 1.723241697 0.962855601 1.301282011 0.99554219 1.037141042 1.051008392 1.296517929 1 15.9044873 -6.266201469 24.69836785 1.076798638 1.203029439 0.048083239 0.241052188 1178.666482 6113075.168 0.084965134 0.07739037 5.42E-07 6.266201469 0.126230801 ALNGDDRPS(ph)SPVEELPSLAFENFLKPIK ddPTM_HeLa_A486_30min_R1 1 ALNGDDRPSSPVEELPSLAFENFLKPIK 28 2 O60673-2;O60673 O60673-2 REV3L DNA polymerase zeta catalytic subunit 1 0 ALNGDDRPS(0.5)S(0.5)PVEELPSLAFENFLKPIK 65.893 0.0048821 14284000 18418 23913 14190 9523.9 22045 25740 22187 22416 17195 21978 TRUE FALSE FALSE 17126.99331 22018.04679 19684.74802 22172.12051 19279.91054 22564.46051 16635.57793 17312.36614 18685.47644 16474.56575 1.03960211 1.336487233 1.194856867 1.34583945 1.170283383 1.369654342 1.009773379 1.050854171 1.134201455 1 14.00795282 -6.776783773 24.99999431 1.052945056 1.246256242 0.485418467 0.097815772 203.297677 331221.5386 0.03822465 0.02587711 1.67E-07 6.776783773 0.193311186 ALNHSVEDIEPDLLT(ph)PR ddPTM_HeLa_A485_30min_R1 4 ALNHSVEDIEPDLLTPR 17 0 Q8IWR0;I3L2K5 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 0 ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR ;;; 238.87 3.37E-42 508487000 355390 495905 492555 350157 546433 454076 499299 571250 444221 471322 TRUE FALSE FALSE 434445.2794 553896.776 674771.5914 369285.1903 492028.2119 477850.7172 392619.6898 431150.0418 533372.0801 353830.0994 1.227835846 1.565431479 1.907049718 1.043679412 1.390577604 1.350508953 1.109627729 1.218522795 1.507424272 1 18.43269725 -5.277363431 24.99992394 1.24709415 1.566638306 0.341538353 0.212572087 926.6502244 1454789.917 0.05950472 0.088582295 5.28E-06 5.277363431 0.319544157 ALNHSVEDIEPDLLT(ph)PR ddPTM_HeLa_A486_30min_R1 4 ALNHSVEDIEPDLLTPR 17 0 Q8IWR0;I3L2K5 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 0 ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR ;;; 236.5 3.95E-42 452474000 434039 480205 458186 155007 583631 433446 492404 482418 404425 466613 TRUE FALSE FALSE 403615.1075 442151.8069 635607.8898 360864.1296 510426.5578 379971.8395 369199.3111 372581.9525 439480.8846 349770.0677 1.153944104 1.264121341 1.817216362 1.031718157 1.459320294 1.086347503 1.055548617 1.06521966 1.256485118 1 18.41604731 -6.276903867 23.69003986 1.094473141 1.349556475 0.277454531 0.203702825 563.2723597 862873.0493 0.070830076 0.062735065 5.29E-07 6.276903867 0.255083334 ALPAAHIPAPPHEGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ALPAAHIPAPPHEGSPR 17 0 P17029;E9PC66 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 0 ALPAAHIPAPPHEGS(1)PR;ALPAAHIPAPPHEGS(1)PR ; 111.49 9.91E-05 287190000 66268 80377 104552 73841 105993 100460 105363 124663 89330 112666 TRUE FALSE FALSE 81009.08798 89776.39096 143230.1356 77874.74685 95439.96476 105719.9303 82851.33431 94089.20379 107257.7116 84580.43966 0.957775678 1.061432068 1.693419142 0.920718161 1.128392866 1.249933562 0.979556676 1.112422732 1.268114851 1 16.36803644 ALPAAHIPAPPHEGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ALPAAHIPAPPHEGSPR 17 0 P17029;E9PC66 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 0 ALPAAHIPAPPHEGS(1)PR;ALPAAHIPAPPHEGS(1)PR ; 175.52 9.53E-13 239991000 128524 159940 168449 45203 178932 140284 155544 155685 150554 165401 TRUE FALSE FALSE 119515.1313 147265.7719 233676.964 105234.8684 156488.6801 122977.1864 116625.246 120238.9241 163604.1419 123983.513 0.963959872 1.18778512 1.88474224 0.848781147 1.262173303 0.991883383 0.940651246 0.969797686 1.31956369 1 16.91978876 ALPASET(ph)PK ddPTM_HeLa_A485_30min_R1 2 ALPASETPK 9 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 ALPAS(0.041)ET(0.959)PK;ALPAS(0.015)ET(0.985)PK ; 99.53 0.009717 1304910000 1421910 1181750 862350 2714600 1753530 1351990 1973310 1789240 1041120 3371600 TRUE FALSE FALSE 1738208.974 1319945.383 1181369.15 2862891.724 1578942.396 1422778.106 1551696.198 1350426.085 1250063.234 2531122.17 0.686734522 0.52148624 0.466737309 1.131076073 0.623811215 0.562113565 0.613046741 0.533528607 0.493877083 1 21.27134571 -10.33613349 3.870710733 1.001001935 0.627912759 0.279093589 0.180382576 122143636.3 132311702.2 1267535.898 0.046507989 4.61E-11 10.33613349 -0.373089175 ALPASET(ph)PK ddPTM_HeLa_A486_30min_R1 3 ALPASETPK 9 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 ALPAS(0.032)ET(0.968)PK;ALPAS(0.013)ET(0.987)PK;ALPAS(0.027)ET(0.973)PK ;; 112.83 0.0039 1845830000 2768350 2796750 1347510 2753170 2541310 3296240 4366470 3771030 1986410 6468000 TRUE FALSE FALSE 2574302.961 2575125.344 1869301.96 6409518.898 2222555.203 2889583.423 3273933.022 2912448.79 2158593.618 4848370.7 0.530962486 0.531132107 0.385552606 1.321994396 0.458412803 0.595990612 0.675264584 0.600706705 0.445220416 1 22.20906858 -11.38071788 2.11500859 3.403266484 0.623669532 0.174573367 0.249924882 28992140.2 2866983.124 333290345.1 0.062441481 4.16E-12 11.38071788 -2.779596952 ALPCQS(ph)PDPELEAGSAPVQAPLALVPEEAER ddPTM_HeLa_A485_30min_R1 1 ALPCQSPDPELEAGSAPVQAPLALVPEEAER 31 0 O15534;J3KTM2;J3KRL7;O15534-4 O15534 PER1 Period circadian protein homolog 1 1 0 ALPCQS(0.5)PDPELEAGS(0.5)APVQAPLALVPEEAER 51.296 0.020856 22541000 0 0 0 1997.5 3028.6 0 0 3400.4 0 2165.5 TRUE FALSE FALSE 0 0 0 2106.618367 2727.06195 0 0 2566.446568 0 1625.680703 0 0 0 1.295837715 1.677489279 0 0 1.57869043 0 1 10.66682821 -5.231981902 22.57681443 0.788009596 9.09E-07 0.269406183 0.598502899 307.2130468 235452.0546 0.167168041 0.289438207 5.86E-06 5.231981902 -0.788008688 ALPGQLKPFETLLSQNQGGK ddPTM_HeLa_A485_30min_R1 1 ALPGQLKPFETLLSQNQGGK 20 1 P09211;A0A087X243 P09211 GSTP1 Glutathione S-transferase P 0 0 142.26 3.27E-09 283400000 91676 79637 74102 121380 143390 133720 157130 163410 98594 161680 FALSE FALSE TRUE 112069.0099 88949.8544 101515.4134 128010.682 129113.5881 140721.3724 123557.8919 123333.4413 118380.9114 121376.1515 0.923319849 0.732844577 0.836370343 1.054660907 1.063747586 1.159382388 1.017975033 1.016125818 0.975322664 1 16.88912546 -5.24406125 6.270303559 1.046879305 0.819525003 0.694521651 0.063697896 0.088401647 14.87665077 0.01786537 0.029911782 5.70E-06 5.24406125 -0.227354302 ALPGQLKPFETLLSQNQGGK ddPTM_HeLa_A486_30min_R1 1 ALPGQLKPFETLLSQNQGGK 20 1 P09211;A0A087X243 P09211 GSTP1 Glutathione S-transferase P 0 0 119.31 1.08E-05 253150000 55995 52803 30544 23942 69233 55641 74751 75058 43084 74077 FALSE FALSE TRUE 52070.03966 48618.69797 42371.4548 55738.18596 60549.15157 48776.57914 56047.50916 57968.9319 46818.55581 55527.63704 0.937731955 0.87557657 0.763069654 1.003791786 1.090432707 0.87841986 1.009362403 1.043965402 0.843157719 1 15.76091838 -5.287307602 24.8927203 0.984565426 0.860471094 0.333212581 0.079313614 781.7929482 752309.4374 0.022176517 0.032906796 5.16E-06 5.287307602 -0.124094332 ALPLS(ph)PR ddPTM_HeLa_A485_30min_R1 7 ALPLSPR 7 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR ;;;;;; 123.98 0.0017783 3764167000 1668432 2316850 2437980 1653301 2608340 2204520 2404160 2457070 2097740 2264790 TRUE FALSE FALSE 2039568.942 2587785.454 3339890.255 1743616.647 2348644.511 2319945.258 1890491.576 1854469.73 2518737.176 1700219.533 1.199591525 1.522030187 1.964387651 1.025524418 1.381377208 1.364497474 1.111910279 1.090723694 1.481418797 1 20.69728961 -5.286937652 24.99248144 1.221452688 1.558006014 0.332854565 0.229137569 885.7295468 868157.8281 0.064478784 0.095676222 5.16E-06 5.286937652 0.336553326 ALPLS(ph)PR ddPTM_HeLa_A486_30min_R1 5 ALPLSPR 7 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR;ALPLS(1)PR ;;;; 116.05 0.002447 2450020000 1096280 1251320 1159670 352529 1381490 1057090 1140940 1225180 1053350 1131670 TRUE FALSE FALSE 1019436.433 1152160.846 1608725.281 820705.3278 1208210.642 926676.9835 855464.7444 946233.2595 1144655.226 848292.4661 1.201751134 1.35821181 1.896427642 0.967479213 1.42428548 1.092402704 1.008454959 1.115456399 1.349363895 1 19.69420222 -5.295247344 24.99960247 1.146371989 1.472738843 0.355506135 0.214667603 705.6237142 521778.2992 0.060333326 0.089494629 5.07E-06 5.295247344 0.326366854 ALPNNTSSS(ph)PQPK ddPTM_HeLa_A485_30min_R1 3 ALPNNTSSSPQPK 13 0 A0A087WXZ1;A0A087WT22;E7ESS1;A0A087X1Q1;J3KP33;A0A087WZU8;A0A0U1RQC9;P04637-8;P04637-9;P04637-7;P04637-5;P04637-6;P04637-2;P04637-3;P04637-4;P04637 A0A087WXZ1 TP53 Cellular tumor antigen p53 1 0 ALPNNT(0.004)S(0.191)S(0.062)S(0.743)PQPK;ALPNNT(0.105)S(0.301)S(0.151)S(0.443)PQPK;ALPNNT(0.009)S(0.019)S(0.055)S(0.917)PQPK ;; 212.55 1.70E-22 0 333364 355752 307625 403944 451900 373435 449740 474210 269790 466770 TRUE FALSE FALSE 407519.6717 397354.1018 421428.2888 426010.4379 406907.2493 392987.4792 353649.375 357909.254 323934.3783 350412.8293 1.162970182 1.133959914 1.20266227 1.215738701 1.161222465 1.121498548 1.009236379 1.021393123 0.924436411 1 18.41869607 -6.711405828 1.723095299 0.977345448 1.178337396 0.892714603 0.030775894 0.112761641 0.685113499 0.016711678 0.010750069 1.94E-07 6.711405828 0.200991948 ALPPLPRPPT(ph)PK ddPTM_HeLa_A485_30min_R1 2 ALPPLPRPPTPK 12 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ALPPLPRPPT(1)PK;ALPPLPRPPT(1)PK ; 112.5 0.00042297 1818130000 1292260 1429900 1144260 1970130 1767820 1595170 2206190 2201880 1306910 2463640 TRUE FALSE FALSE 1579718.779 1597114.367 1567569.391 2077753.213 1591809.634 1678690.635 1734819.484 1661865.478 1569194.849 1849499.888 0.854132941 0.863538504 0.847563928 1.123413538 0.860670306 0.907645708 0.93799383 0.898548569 0.848442792 1 20.81870378 ALPPLPRPPT(ph)PK ddPTM_HeLa_A486_30min_R1 2 ALPPLPRPPTPK 12 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ALPPLPRPPT(1)PK;ALPPLPRPPT(1)PK ; 108.71 0.00055584 2272400000 1749960 1753950 986070 860420 1682950 1872670 2381500 2206630 1301020 2645200 TRUE FALSE FALSE 1627296.841 1614960.614 1367902.712 2003101.243 1471858.718 1641639.015 1785623.511 1704228.519 1413793.461 1982824.703 0.820696272 0.81447473 0.689875767 1.010226088 0.742304005 0.827929475 0.900545322 0.859495303 0.713019895 1 20.91912571 -10.90810595 2.829157855 1.097291322 0.82295739 0.269787388 0.088785247 80484072.29 45492853.54 51934556.34 0.022862486 1.24E-11 10.90810595 -0.274333932 ALPQT(ph)PR ddPTM_HeLa_A485_30min_R1 7 ALPQTPR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR ;;;;;; 112.11 0.013654 5178980000 7216490 7921390 8879770 7758070 8286660 6575820 7177900 6337180 7680380 9216300 TRUE FALSE FALSE 8821773.304 8847727.654 12164766.44 8181873.72 7461611.034 6920119.767 5644283.027 4782976.669 9221761.817 6918846.023 1.275035356 1.27878661 1.758207424 1.182548895 1.078447332 1.000184098 0.815783876 0.69129688 1.332846805 1 22.7221 -5.681696914 2.509429398 0.951516897 1.424619018 0.489934228 0.203016597 0.230957557 2.963857189 0.065826696 0.087728931 2.08E-06 5.681696914 0.473102121 ALPQT(ph)PR ddPTM_HeLa_A486_30min_R1 4 ALPQTPR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR;ALPQT(1)PR ;;; 110.76 0.014275 7802950000 4702370 5666540 4124330 1282552 4210610 4614900 4447300 4195620 4240590 4738600 TRUE FALSE FALSE 4372758.146 5217502.733 5721381.029 2985845.873 3682476.031 4045560.559 3334538.501 3240368.916 4608167.756 3552023.717 1.231061078 1.468881727 1.610738409 0.840604149 1.036726195 1.138945255 0.938771463 0.912259932 1.297335863 1 21.76020978 -5.260571739 24.99931721 1.021692974 1.440092536 0.624523157 0.146871195 49.47945318 1425630.529 0.040307775 0.064957905 5.49E-06 5.260571739 0.418399562 ALPQT(ph)PRPR ddPTM_HeLa_A485_30min_R1 12 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR ;;;;;;;;;;; 132.32 0.00026195 1.04E+11 5040957 7948810 8197331 5286176 8976495 7329862 8587961 9948090 6807261 6833688 TRUE FALSE FALSE 6162300.494 8878354.184 11229864.86 5574946.41 8082763.639 7713642.24 6753072.975 7508305.33 8173415.843 5130175.346 1.201187109 1.730614177 2.188982656 1.086697049 1.575533601 1.503582572 1.316343501 1.463557251 1.593203992 1 22.29057671 -12.10811783 0.200655707 1.46E-09 1.628163696 0.219910825 0.289702505 91.92852129 1.799334648 39.85036548 0.749312197 7.80E-13 12.10811783 1.628163694 ALPQT(ph)PRPR ddPTM_HeLa_A486_30min_R1 9 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR;ALPQT(1)PRPR ;;;;;;;; 145.41 0.00011776 1.15E+11 9840110 10486340 10726160 3526185 13448370 9365180 11059630 11426690 8229198 9766530 TRUE FALSE FALSE 9150369.103 9655364.228 14879616.41 8209136.884 11761550.03 8209799.31 8292393.597 8825082.13 8942511.508 7320927.319 1.249892084 1.31887175 2.032477002 1.121324735 1.606565606 1.121415219 1.132697162 1.205459602 1.221499835 1 22.80359497 -6.274046705 24.38155798 1.148835735 1.470003723 0.326070308 0.236546647 705.8450053 1365043.279 0.082024529 0.072851704 5.32E-07 6.274046705 0.321167988 ALPQTPRPR ddPTM_HeLa_A485_30min_R1 1 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 99.815 0.0025178 294430000 40717 61167 54701 35422 53084 42869 61120 61370 50521 42516 FALSE FALSE TRUE 49774.35618 68319.94857 74937.1762 37357.01417 47798.77057 45113.55455 48061.2127 46318.91128 60660.10129 31917.54365 1.559467004 2.140513986 2.34783657 1.170422592 1.497570461 1.413440679 1.505792965 1.451205387 1.900525365 1 14.96206201 -5.264105138 24.99998169 1.44520341 2.028396667 0.473857277 0.286878777 201.1889697 1886792.308 0.078224887 0.122268595 5.44E-06 5.264105138 0.583193257 ALPQTPRPR ddPTM_HeLa_A486_30min_R1 2 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 ; ; 123.86 0.00040126 883750000 73732 106565 107986 32952 126012 82432 97709 98729 82216 92644 FALSE FALSE TRUE 68563.76755 98120.4013 149801.0712 76713.9213 110206.3999 72262.37795 73261.17474 76250.56194 89342.54908 69445.33939 0.987305529 1.41291557 2.157107626 1.104666231 1.586951708 1.040564832 1.054947321 1.097993942 1.286516127 1 16.08359025 -6.267278649 24.48835099 1.099562979 1.467862749 0.255793195 0.300906122 524.6110977 2200073.108 0.105995439 0.095989928 5.40E-07 6.267278649 0.36829977 ALPRGS(ph)PHSDLK ddPTM_HeLa_A485_30min_R1 2 ALPRGSPHSDLK 12 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 ALPRGS(0.844)PHS(0.156)DLK;ALPRGS(0.996)PHS(0.004)DLK ; 56.514 0.018373 649080000 250437 334780 217774 163106 335080 408530 525630 664230 247765 295600 TRUE FALSE FALSE 306145.8467 373929.6088 298337.6649 172016.0678 301718.2587 429919.9991 413324.8565 501326.551 297489.1629 221912.3601 1.379579968 1.685032815 1.344394088 0.775153163 1.359628001 1.937341385 1.862558968 2.25911955 1.340570497 1 17.7596305 -6.180198655 6.549803656 1.769114016 1.298250357 0.170673095 0.385521145 0.356710296 23.97052729 0.127753377 0.127710295 6.60E-07 6.180198655 -0.470863659 ALPS(ph)ECQMLLFS(ph)AT(ph)FEDSVWHFAER ddPTM_HeLa_A485_30min_R1 1 ALPSECQMLLFSATFEDSVWHFAER 25 0 E9PR46;J3QL17;Q9UHL0-2;Q9UHL0 E9PR46 DDX25 ATP-dependent RNA helicase DDX25 3 0 ALPS(0.995)ECQMLLFS(0.997)AT(0.997)FEDS(0.012)VWHFAER 40.463 0.024295 1453400000 24995 242980 320570 17005 202920 146450 123950 204300 126730 28075 TRUE FALSE FALSE 30555.05152 271394.3974 439162.183 17933.94009 182716.5723 154117.8955 97467.06992 154195.1047 152163.5486 21076.41918 1.449726885 12.87668437 20.83666012 0.850900712 8.669241712 7.312337746 4.624460592 7.316001041 7.219611038 1 14.36334216 -5.289860375 24.99913699 5.745821409 11.83659678 0.252253619 5.033373452 1016.361581 893990.386 1.416017841 2.100725961 5.13E-06 5.289860375 6.090775372 ALPS(ph)EDEEGQDDKDFYLR ddPTM_HeLa_A485_30min_R1 3 ALPSEDEEGQDDKDFYLR 18 1 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;A0A5F9ZHE1;H0Y325;H0Y326;F8WAI0;Q5JV20;A0A5F9ZHB2;A0A5F9ZH87;Q8NF91-9;Q8NF91-3;Q8NF91-11;Q8NF91-8;Q8NF91-2;A0A5F9ZH86 Q8NF91 SYNE1 Nesprin-1 1 0 ALPS(1)EDEEGQDDKDFYLR;ALPS(1)EDEEGQDDKDFYLR;ALPS(1)EDEEGQDDKDFYLR ;; 196.78 4.75E-20 417470000 224460 180597 141156 283233 194066 207661 284106 368247 191753 601716 TRUE FALSE FALSE 274390.3526 201716.2482 193375.4784 298705.3016 174744.1076 218533.8089 223404.4322 277933.8459 230236.0682 451719.275 0.607435564 0.446552227 0.428087729 0.66126313 0.386842265 0.483782342 0.494564754 0.615280023 0.509688386 1 18.78506695 -9.608709353 0.5812237 1.077593893 0.499128287 0.754350767 0.083219391 6.058038964 1.54681794 1.021843167 0.034089227 2.46E-10 9.608709353 -0.578465605 ALPS(ph)EDEEGQDDKDFYLR ddPTM_HeLa_A486_30min_R1 3 ALPSEDEEGQDDKDFYLR 18 1 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;A0A5F9ZHE1;H0Y325;H0Y326;F8WAI0;Q5JV20;A0A5F9ZHB2;A0A5F9ZH87;Q8NF91-9;Q8NF91-3;Q8NF91-11;Q8NF91-8;Q8NF91-2;A0A5F9ZH86 Q8NF91 SYNE1 Nesprin-1 1 0 ALPS(1)EDEEGQDDKDFYLR;ALPS(1)EDEEGQDDKDFYLR;ALPS(1)EDEEGQDDKDFYLR ;; 132.83 3.20E-06 498737000 267773 241867 151363 111087 268682 279700 289886 288522 243668 347395 TRUE FALSE FALSE 249003.4955 222700.5781 209974.8072 258616.15 234981.3982 245193.4578 217353.4567 222831.839 264789.3384 260405.0308 0.956216148 0.855208432 0.806339288 0.993130391 0.902368888 0.941584949 0.834674568 0.855712496 1.016836493 1 17.9903978 -7.770039492 25 1.008418338 0.892300399 0.411848982 0.055089502 205.2273396 596560.4437 0.050992501 0.013999138 1.70E-08 7.770039492 -0.116117939 ALPSGS(ph)PAQGPSGNRPQSTGLSCQGR ddPTM_HeLa_A486_30min_R1 1 ALPSGSPAQGPSGNRPQSTGLSCQGR 26 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 ALPS(0.011)GS(0.988)PAQGPS(0.001)GNRPQSTGLSCQGR 88.842 0.0020645 107580000 20421 23911 22583 10972 29004 20732 22172 20133 19685 24877 TRUE FALSE FALSE 18989.59335 22016.20528 31327.74239 25543.37049 25366.04787 18174.29663 16624.33109 15549.1554 21391.31165 18647.63728 1.01833777 1.180643153 1.679984543 1.369791256 1.360282136 0.974616589 0.891497987 0.833840511 1.147132547 1 14.18670523 -6.275069654 7.934931287 0.953565023 1.336722637 0.503826757 0.174192293 0.150495121 64.23824634 0.064172609 0.058546593 5.31E-07 6.275069654 0.383157614 ALPSLNTGSS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 ALPSLNT(0.002)GS(0.01)S(0.494)S(0.494)PR 66.795 0.013966 750290000 706390 1091900 1078500 686280 1264000 956720 1151800 1312900 853320 981880 TRUE FALSE FALSE 863524.0185 1219588.207 1477482.03 723769.7386 1138151.722 1006812.38 905708.5207 990909.2165 1024573.497 737115.3862 1.17149097 1.654541785 2.004410785 0.981894765 1.544061816 1.36588165 1.22872014 1.344306787 1.389977087 1 19.49153095 -9.611284889 0.159509397 0.636560608 1.63614011 0.201300509 0.262340823 32.52963869 1.312680231 7.05171435 1.633985566 2.45E-10 9.611284889 0.999579502 ALPSLNTGSSS(ph)PR ddPTM_HeLa_A485_30min_R1 9 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 ALPSLNTGSS(0.071)S(0.929)PR;ALPSLNTGS(0.001)S(0.11)S(0.889)PR;ALPSLNTGS(0.003)S(0.171)S(0.826)PR;ALPSLNTGSS(0.045)S(0.955)PR;ALPSLNTGSS(0.04)S(0.959)PR;ALPSLNTGSS(0.001)S(0.999)PR;ALPSLNTGSSS(1)PR;ALPSLNTGSS(0.003)S(0.997)PR;ALPSLNTGSS(0.001)S(0.999)PR ;;;;;;;; 228.97 8.79E-28 24944000000 10776650 14791180 15268410 9804000 16518930 12960440 15059490 16155980 12990130 12827420 TRUE FALSE FALSE 13173878.61 16520879.83 20916830.23 10339567.69 14874247.33 13639028.6 11841906.94 12193700.57 15597129.94 9629780.265 1.368035225 1.715602992 2.172098392 1.073707542 1.544609214 1.416338506 1.229717253 1.266249098 1.619676619 1 23.19907145 -5.27620944 24.99994224 1.329492042 1.748281328 0.387388325 0.255195269 833.1322878 1410165.469 0.070853119 0.105576356 5.29E-06 5.27620944 0.418789286 ALPSLNTGSSS(ph)PR ddPTM_HeLa_A486_30min_R1 6 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 ALPSLNTGSS(0.062)S(0.938)PR;ALPSLNTGSS(0.005)S(0.995)PR;ALPSLNTGSS(0.001)S(0.999)PR;ALPSLNTGSS(0.001)S(0.999)PR;ALPSLNTGSS(0.003)S(0.997)PR;ALPSLNTGSSS(1)PR ;;;;; 273.23 1.74E-48 22588300000 15248530 17539810 17248010 5076220 20547690 15129110 17684660 17643050 12445450 14153290 TRUE FALSE FALSE 14179686.79 16149891.58 23926901.39 11817696.7 17970407.12 13262634.23 13259771.02 13626112.66 13524231.63 10609214.06 1.336544508 1.522251458 2.255294431 1.113908781 1.693849046 1.250105253 1.249835373 1.28436589 1.274762819 1 23.33881445 -6.244460017 1.102616851 1.197929238 1.632319886 0.287459258 0.286595407 0.671226162 1.701503034 0.151300974 0.138777892 5.70E-07 6.244460017 0.434390648 ALPTSKPEGS(ph)LHS(ph)SPVGPSSSK ddPTM_HeLa_A485_30min_R1 2 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 ALPT(0.008)S(0.009)KPEGS(0.983)LHS(0.675)S(0.325)PVGPSSSK;ALPT(0.033)S(0.038)KPEGS(0.926)LHS(0.606)S(0.396)PVGPSSSK ; 128.92 5.36E-06 466670000 299200 265190 211211 477130 427770 441160 595540 654130 364460 711060 TRUE FALSE FALSE 365756.0078 296201.6637 289346.7381 503194.4037 385179.7168 464258.4554 468298.0139 493703.5919 437603.779 533805.8281 0.68518549 0.55488653 0.542044921 0.942654383 0.721572708 0.8697141 0.877281568 0.924874863 0.819780819 1 19.02595553 -5.258271132 24.98459004 0.869211609 0.590123722 0.731484053 0.079053056 138.5369209 1092487.607 0.02116986 0.03480007 5.52E-06 5.258271132 -0.279087887 ALPTSKPEGS(ph)LHS(ph)SPVGPSSSK ddPTM_HeLa_A486_30min_R1 1 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 ALPT(0.021)S(0.024)KPEGS(0.939)LHS(0.615)S(0.401)PVGPSSSK 108.75 0.00041012 299800000 268240 280770 157850 138640 285010 386440 420220 434700 246820 459120 TRUE FALSE FALSE 249437.7612 258520.7627 218973.7474 322760.9265 249261.3882 338764.9618 315076.5114 335728.2994 268214.5563 344153.3636 0.724786643 0.751178951 0.636267927 0.937840395 0.72427416 0.984343022 0.915511934 0.975519448 0.779346026 1 18.39269208 -5.664115287 1.087779036 0.924070304 0.709747068 0.45766638 0.093074227 0.458941948 1.142305552 0.037510102 0.063329779 2.17E-06 5.664115287 -0.214323235 ALPTSKPEGS(ph)LHSS(ph)PVGPSSSK ddPTM_HeLa_A486_30min_R1 1 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 ALPT(0.01)S(0.012)KPEGS(0.977)LHS(0.057)S(0.943)PVGPSSSK 118.57 0.00013126 261390000 152570 158400 74514 72661 156180 192880 234660 226270 130530 214560 TRUE FALSE FALSE 141875.6309 145847.8071 103367.8164 169158.4801 136590.4481 169084.4267 175945.586 174753.2604 141844.4455 160832.7794 0.882131313 0.906828867 0.642703662 1.051766193 0.849269959 1.051305755 1.09396596 1.086552511 0.881937413 1 17.29520195 -5.292106882 24.99108166 1.005228661 0.820181958 0.431252303 0.100584239 640.6009425 522027.1224 0.028714072 0.042595219 5.10E-06 5.292106882 -0.185046702 ALPTSKPEGSLHS(ph)SPVGPSSSK ddPTM_HeLa_A485_30min_R1 1 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 ALPT(0.001)S(0.001)KPEGS(0.004)LHS(0.6)S(0.394)PVGPSSSK 73.805 0.0034985 755960000 138070 172770 142790 126760 217020 198540 236830 258910 151940 225480 TRUE FALSE FALSE 168783.1952 192973.9486 195613.963 133684.5778 195412.7268 208935.2474 186229.3358 195411.9165 182432.9643 169271.9857 0.997112396 1.140022951 1.155619237 0.789761976 1.154430404 1.234316751 1.100178125 1.154425617 1.077750483 1 17.3689837 ALPTSKPEGSLHSS(ph)PVGPSSSK ddPTM_HeLa_A485_30min_R1 3 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 ALPTSKPEGSLHS(0.032)S(0.968)PVGPSSSK;ALPTSKPEGSLHS(0.015)S(0.985)PVGPSSSK;ALPTSKPEGSLHS(0.056)S(0.944)PVGPSSSK ;; 152.99 5.33E-10 3900220000 2477440 2589290 2139080 2036630 3666700 2922940 3777600 4158200 2551530 3441250 TRUE FALSE FALSE 3028537.981 2892084.942 2930414.707 2147885.94 3301630.473 3075980.619 2970484.9 3138394.93 3063598.667 2583409.707 1.172302625 1.119483655 1.134320545 0.831415139 1.278012723 1.190666974 1.149831129 1.214826639 1.185874102 1 21.30084503 ALPTSKPEGSLHSS(ph)PVGPSSSK ddPTM_HeLa_A486_30min_R1 1 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 ALPTSKPEGSLHS(0.057)S(0.943)PVGPSSSK 102.27 0.00024744 575950000 793880 756270 434500 39611 771350 686100 854510 780500 575020 503310 TRUE FALSE FALSE 738233.1116 696340.4109 602750.0363 92216.40983 674600.0904 601455.9578 640702.5599 602797.1882 624863.1966 377277.9 1.956735636 1.845696265 1.597628794 0.244425687 1.788072109 1.594198753 1.698224465 1.597753773 1.656241186 1 18.52526807 ALQAPHS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 ALQAPHSPSK 10 0 F2Z2Z8;Q5T173;Q96AQ6-3;Q96AQ6-2;Q96AQ6 F2Z2Z8 PBXIP1 Pre-B-cell leukemia transcription factor-interacting protein 1 1 0 ALQAPHS(0.994)PS(0.006)K;ALQAPHS(0.988)PS(0.012)K ; 78.814 0.0035859 223990000 881480 913010 493510 239100 754740 885270 898680 797150 841370 1212740 TRUE FALSE FALSE 819692.804 840659.7625 684610.2887 556636.8834 660073.4715 776054.3882 673820.7587 615656.3467 914300.629 909062.0104 0.901690748 0.924755135 0.753095257 0.612320037 0.7261039 0.853686964 0.741226397 0.67724351 1.005762664 1 19.79401918 -7.776294143 24.93179178 1.002881637 0.772718456 0.497828978 0.092040419 237.859105 399203.517 0.09589711 0.025179471 1.67E-08 7.776294143 -0.230163181 ALQAPHS(ph)PSKTDGK ddPTM_HeLa_A485_30min_R1 1 ALQAPHSPSKTDGK 14 1 F2Z2Z8;Q5T173;Q96AQ6-3;Q96AQ6-2;Q96AQ6 F2Z2Z8 PBXIP1 Pre-B-cell leukemia transcription factor-interacting protein 1 1 0 ALQAPHS(0.491)PS(0.491)KT(0.018)DGK 131.45 1.07E-05 440550000 1222400 756560 364990 1593000 758260 974840 1375600 1343900 671250 3411200 TRUE FALSE FALSE 1494318.663 845033.1108 500014.9895 1680021.556 682764.972 1025881.115 1081691.822 1014306.418 805963.7179 2560850.618 0.583524338 0.329981415 0.195253478 0.656040436 0.266616478 0.400601701 0.422395518 0.396081837 0.314725003 1 21.28819167 -10.40934227 3.239936774 1.007389253 0.393018572 0.656600324 0.130994248 81332617.61 108170365.2 5581554.807 0.033397784 3.90E-11 10.40934227 -0.614370681 ALQAPHS(ph)PSKTDGK ddPTM_HeLa_A486_30min_R1 1 ALQAPHSPSKTDGK 14 1 F2Z2Z8;Q5T173;Q96AQ6-3;Q96AQ6-2;Q96AQ6 F2Z2Z8 PBXIP1 Pre-B-cell leukemia transcription factor-interacting protein 1 1 0 ALQAPHS(0.533)PS(0.351)KT(0.116)DGK 121.27 3.85E-05 381350000 1426000 1172900 476560 534000 947530 1489800 1735700 1563800 1035900 2428700 TRUE FALSE FALSE 1326044.764 1079955.132 661096.7947 1243178.987 828681.952 1306003.623 1301409.502 1207756.878 1125692.646 1820537.712 0.728380827 0.59320668 0.363132711 0.682863628 0.455185271 0.717372463 0.714848966 0.663406679 0.61832976 1 20.7959332 -10.90254659 0.257559002 1.4143017 0.556931678 0.527368735 0.111488054 23.16033137 0.935341397 5.967929719 0.167623837 1.25E-11 10.90254659 -0.857370021 ALQAPHSPS(ph)KTDGK ddPTM_HeLa_A486_30min_R1 1 ALQAPHSPSKTDGK 14 1 F2Z2Z8;Q5T173;Q96AQ6-3;Q96AQ6-2;Q96AQ6 F2Z2Z8 PBXIP1 Pre-B-cell leukemia transcription factor-interacting protein 1 1 0 ALQAPHS(0.029)PS(0.921)KT(0.05)DGK 115.73 0.00010143 417540000 1231700 1070600 516520 588110 948350 1356500 1533000 1364400 940740 2360900 TRUE FALSE FALSE 1145364.191 985761.7569 716530.3769 1369149.801 829399.1 1189148.822 1149427.186 1053755.905 1022284.101 1769715.273 0.647202523 0.55701715 0.404884553 0.773655414 0.468662452 0.671943583 0.64949837 0.595438103 0.577654562 1 20.75508584 -14 0.336342965 5.28696899 0.578433628 0.60277522 0.098797573 250.4882153 2.138200108 769.7064201 0.078547468 1.00E-14 14 -4.708535362 ALQASALK ddPTM_HeLa_A485_30min_R1 2 ALQASALK 8 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 178.83 3.48E-06 238570000 359560 453850 404420 392850 536910 521080 620440 692990 417260 568120 FALSE FALSE TRUE 439542.8815 506923.8095 554031.7873 414310.4008 483453.3552 548362.9431 487877.9255 523033.1159 501000.2547 426498.1395 1.030585695 1.188572147 1.299025098 0.9714237 1.133541534 1.285733494 1.143915718 1.226343253 1.17468333 1 18.70217992 -4.255330091 23.22522288 1.166553052 1.030585527 0.119394607 0.101634751 519.8373683 1976065.992 0.024779163 0.212454513 5.55E-05 4.255330091 -0.135967526 ALQASALK ddPTM_HeLa_A486_30min_R1 2 ALQASALK 8 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 163.99 0.000181 108025000 175803 210130 145414 64862 229620 207782 225240 234700 176098 245090 FALSE FALSE TRUE 163480.1175 193478.5335 201722.1951 151002.0139 200818.9185 182147.9694 168882.5697 181263.9335 191362.3164 183717.8687 0.889843316 1.053128554 1.097999865 0.821923393 1.093083214 0.991454836 0.919249558 0.986642915 1.041609712 1 17.48713243 -7.688645651 9.441832364 1.020670777 0.984491835 0.033019706 0.083634874 1.338375064 160.1185551 0.055475797 0.020825795 2.05E-08 7.688645651 -0.036178942 ALQESATGQPEPTS(ph)SPDNKPFK ddPTM_HeLa_A485_30min_R1 1 ALQESATGQPEPTSSPDNKPFK 22 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ALQESATGQPEPT(0.001)S(0.587)S(0.412)PDNKPFK 160.47 5.28E-14 294220000 150820 106670 80781 245490 164610 177370 270380 268990 123210 347660 TRUE FALSE FALSE 184369.3887 119144.1286 110665.2535 258900.4971 148220.8504 186656.8189 212611.1042 203019.7807 147937.1169 260994.7602 0.706410307 0.456500079 0.424013315 0.991975842 0.56790738 0.715174584 0.814618286 0.777869182 0.566820256 1 17.99366132 -14 0.061055835 2.118219036 0.199825896 0.283849789 0.161748627 510.0587138 2.266780838 86.03174109 13.87730487 1.00E-14 14 -1.91839314 ALQESATGQPEPTS(ph)SPDNKPFK ddPTM_HeLa_A486_30min_R1 3 ALQESATGQPEPTSSPDNKPFK 22 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ALQESATGQPEPT(0.077)S(0.462)S(0.462)PDNKPFK;ALQESATGQPEPT(0.011)S(0.562)S(0.427)PDNKPFK;ALQESATGQPEPT(0.022)S(0.611)S(0.367)PDNKPFK ;; 168.79 2.84E-14 1149390000 554060 630100 316095 353595 582860 863360 984360 917430 536920 1079440 TRUE FALSE FALSE 515223.2552 580168.5812 438495.4493 823187.0297 509752.2638 756847.4212 738062.7165 708551.2164 583460.6579 809141.198 0.63675321 0.717017725 0.541926984 1.017358938 0.629991731 0.935371259 0.912155651 0.87568303 0.721086331 1 19.62603195 -5.251783486 24.99947558 0.859505939 0.640411149 0.456396144 0.118685829 647.9690654 1677613.245 0.03087581 0.052611948 5.60E-06 5.251783486 -0.219094791 ALQESATGQPEPTSS(ph)PDNKPFK ddPTM_HeLa_A486_30min_R1 1 ALQESATGQPEPTSSPDNKPFK 22 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ALQESATGQPEPT(0.001)S(0.474)S(0.525)PDNKPFK 128.97 9.91E-07 512260000 320680 376100 183330 206170 357850 471110 606520 542130 327060 621310 TRUE FALSE FALSE 298201.988 346296.4663 254320.2857 479974.1793 312965.1162 412989.2381 454762.2809 418698.8336 355409.8241 465729.932 0.640289506 0.743556389 0.546068157 1.03058478 0.671988409 0.886756916 0.97645062 0.899016372 0.763124291 1 18.82913408 -5.254700226 24.99989742 0.879915687 0.653329856 0.505961278 0.111149456 470.5357079 1745518.498 0.029577536 0.049793875 5.56E-06 5.254700226 -0.226585832 ALQHTES(ph)PSETNKPHSK ddPTM_HeLa_A485_30min_R1 4 ALQHTESPSETNKPHSK 17 1 Q14669-3;Q14669;Q14669-2;G5E9G6;C9JLD7;C9JLJ5;C9JSX9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 ALQHTES(0.977)PS(0.022)ET(0.001)NKPHSK;ALQHTES(0.999)PS(0.001)ETNKPHSK;ALQHTES(0.995)PS(0.005)ETNKPHSK;ALQHTES(0.99)PS(0.009)ET(0.001)NKPHSK ;;; 270.47 3.85E-53 2302490000 1194720 1133770 835736 1333190 1565110 1388030 1786050 2334770 1253130 2160260 TRUE FALSE FALSE 1460481.342 1266354.539 1144909.524 1406018.794 1409282.153 1460705.104 1404445.827 1762163.997 1504621.697 1621746.939 0.900560567 0.780858289 0.705972983 0.866977924 0.868990173 0.900698543 0.866008002 1.086583828 0.927778349 1 20.62911728 -6.625344979 0.885323569 1.005762521 0.802653602 0.545916207 0.067291782 0.441117083 0.700064921 0.049900342 0.032664293 2.37E-07 6.625344979 -0.203108918 ALQHTES(ph)PSETNKPHSK ddPTM_HeLa_A486_30min_R1 4 ALQHTESPSETNKPHSK 17 1 Q14669-3;Q14669;Q14669-2;G5E9G6;C9JLD7;C9JLJ5;C9JSX9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 ALQHTES(0.999)PS(0.001)ETNKPHSK;ALQHTES(0.987)PS(0.013)ETNKPHSK;ALQHTES(0.999)PS(0.001)ETNKPHSK;ALQHTES(1)PSETNKPHSK ;;; 273.44 1.46E-59 2364670000 1676870 1553590 855490 537468 1611420 1707770 2023480 1907830 1198430 1872450 TRUE FALSE FALSE 1559330.072 1430477.87 1186758.639 1251252.666 1409300.678 1497082.701 1517183.902 1473458.757 1302310.877 1403576.332 1.110969198 1.019166423 0.845524829 0.891474612 1.0040784 1.066620081 1.080941497 1.049788831 0.927851836 1 20.4206761 -5.992070318 24.76137854 1.032057536 0.960103082 0.106534626 0.077377147 344.2835217 1075055.654 0.025987035 0.029412067 1.02E-06 5.992070318 -0.071954454 ALQLAQRPVSLLASPWTSPTWLK ddPTM_HeLa_A485_30min_R1 1 ALQLAQRPVSLLASPWTSPTWLK 23 1 A0A0G2JNZ5;A0A0G2JNZ0;A0A0G2JLB3;P04062-3;P04062-4;P04062-5;P04062-2;P04062 A0A0G2JNZ5 GBA Glucosylceramidase 0 0 52.909 0.033053 11272000 3004.6 3269.6 2752.6 4113.5 4611.3 3858.8 5191.2 5701 2983.3 6905.7 FALSE FALSE TRUE 3672.962904 3651.951278 3770.901285 4338.210089 4152.182781 4060.840801 4082.057712 4302.820811 3582.020946 5184.23608 0.708486814 0.70443383 0.727378388 0.836807974 0.80092471 0.783305532 0.787398114 0.829981649 0.690944797 1 12.3399157 -14 0.230007623 2.221748042 0.741770458 0.650778264 0.051405091 105.86638 1.059896074 60.40686634 0.093540405 1.00E-14 14 -1.479977584 ALQLSNS(ph)PGASSAFLK ddPTM_HeLa_A485_30min_R1 2 ALQLSNSPGASSAFLK 16 0 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 ALQLSNS(0.926)PGAS(0.074)SAFLK;ALQLSNS(1)PGASSAFLK ; 260.09 1.14E-50 4367100000 2701110 2969980 2848950 3026180 3678000 3010160 4017900 4141800 2959080 3902000 TRUE FALSE FALSE 3301962.601 3317293.326 3902895.16 3191492.551 3311805.406 3167767.323 3159442.842 3126017.056 3552940.214 2929303.211 1.127217759 1.132451333 1.332362981 1.089505702 1.130577877 1.081406428 1.078564633 1.067153801 1.212896023 1 21.4821261 ALQLSNS(ph)PGASSAFLK ddPTM_HeLa_A486_30min_R1 3 ALQLSNSPGASSAFLK 16 0 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 ALQLSNS(0.998)PGAS(0.002)SAFLK;ALQLSNS(1)PGASSAFLK;ALQLSNS(0.999)PGAS(0.001)SAFLK ;; 267.46 3.66E-51 3764190000 3569490 4261280 3073056 1457096 4436930 3719560 4661310 4571730 3273914 3979940 TRUE FALSE FALSE 3319287.184 3923600.653 4263025.582 3392193.126 3880408.867 3260678.505 3495000.936 3530846.879 3557699.502 2983337.119 1.112608817 1.315171735 1.428945309 1.137046532 1.300694059 1.092963475 1.171507207 1.183522592 1.192523459 1 21.50849558 -6.257638637 24.97811203 1.142286249 1.264697942 0.297942103 0.098996314 457.5770489 3007162.034 0.0331266 0.031924549 5.53E-07 6.257638637 0.122411693 ALQS(ph)PALGLR ddPTM_HeLa_A485_30min_R1 4 ALQSPALGLR 10 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 0 ALQS(1)PALGLR;ALQS(1)PALGLR;ALQS(1)PALGLR;ALQS(1)PALGLR ;;; 172.33 2.07E-07 1398050000 888750 1045190 1175350 933850 1265110 982200 1112920 964260 1061460 1419650 TRUE FALSE FALSE 1086449.371 1167415.879 1610160.875 984863.8609 1139151.206 1033626.473 875135.5503 727773.7231 1274485.286 1065757.382 1.019415291 1.095386153 1.510813721 0.924097621 1.068865415 0.969851573 0.821139563 0.682869981 1.195849363 1 20.02344762 ALQS(ph)PALGLR ddPTM_HeLa_A486_30min_R1 4 ALQSPALGLR 10 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 0 ALQS(1)PALGLR;ALQS(1)PALGLR;ALQS(1)PALGLR;ALQS(1)PALGLR ;;; 161.87 5.58E-07 1273760000 1030680 1214990 1176270 375813 1628550 1104020 1170450 1207690 1168850 1165190 TRUE FALSE FALSE 958434.6544 1118709.767 1631753.246 874911.6565 1424282.073 967817.2373 877591.0302 932725.3507 1270166.859 873418.8399 1.097336822 1.280839978 1.868236831 1.001709165 1.630697677 1.108079186 1.00477685 1.06790157 1.454247151 1 19.73631413 -6.321641458 24.99611245 1.123605535 1.377069819 0.186161092 0.260008656 429.2497591 178224.4578 0.089696721 0.079105088 4.77E-07 6.321641458 0.253464283 ALQS(ph)PK ddPTM_HeLa_A485_30min_R1 1 ALQSPK 6 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 ALQS(1)PK 81.642 0.020362 4239300000 8059600 7222300 3112700 14873000 4363700 8044700 9425900 12091000 6389800 17694000 TRUE FALSE FALSE 9852430.215 8066885.159 4264217.26 15685474.33 3929234.706 8465908.053 7411979.462 9125663.292 7672174.249 13283211.43 0.741720499 0.607299312 0.321023066 1.180849556 0.295804574 0.637338952 0.557996046 0.687007305 0.57758429 1 23.66310065 -10.38484917 2.668253638 1.008652595 0.620799683 0.193113129 0.231174541 8925456.501 9662030.8 593330.8293 0.056350326 4.12E-11 10.38484917 -0.387852911 ALQSVGQIVGEVLK ddPTM_HeLa_A486_30min_R1 2 ALQSVGQIVGEVLK 14 0 H0YJC0;A0A087X2I1;P62333;H0YJE9;H0YJT1 H0YJC0 PSMC6 26S protease regulatory subunit 10B 0 0 ; ; 216.34 1.94E-21 4084400 12876.5 16847.6 13200.4 6394.9 21614.1 16104.2 18384.4 20032.4 14222.1 18233.9 FALSE FALSE TRUE 11973.92384 15512.53482 18311.9484 14887.65038 18903.05803 14117.42754 13784.42867 15471.45982 15454.88308 13668.01276 0.876054483 1.134951737 1.339766704 1.089232988 1.383014369 1.03288077 1.008517399 1.131946545 1.130733732 1 13.73851588 ALQTS(ph)PQPPEGPGLPR ddPTM_HeLa_A485_30min_R1 1 ALQTSPQPPEGPGLPR 16 0 A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1;H7C398;Q6PFW1-5 A0A2R8YGT1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 0 ALQT(0.015)S(0.985)PQPPEGPGLPR 178.52 1.41E-17 320070000 158080 227720 225730 229560 278330 250790 294930 292020 232130 335940 TRUE FALSE FALSE 193244.3506 254349.8731 309236.9204 242100.2815 250618.4879 263920.9766 231915.7961 220401.6371 278716.3618 252196.3405 0.766245657 1.008539111 1.226175288 0.959967464 0.993743555 1.046490112 0.919584304 0.873928768 1.105156249 1 17.94418782 -6.756087109 24.99599186 0.964161396 1.008723129 0.004826448 0.118912427 622.1617382 2905615.497 0.047419948 0.035652689 1.75E-07 6.756087109 0.044561734 ALQTS(ph)PQPPEGPGLPR ddPTM_HeLa_A486_30min_R1 1 ALQTSPQPPEGPGLPR 16 0 A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1;H7C398;Q6PFW1-5 A0A2R8YGT1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 0 ALQT(0.072)S(0.928)PQPPEGPGLPR 157.37 1.35E-08 72088000 140870 186330 155210 58186 227280 162160 185170 188200 128990 185840 TRUE FALSE FALSE 130995.7405 171564.5322 215311.4687 135459.9486 198772.4231 142154.3479 138838.5075 145350.9684 140170.9571 139304.4544 0.94035572 1.231579657 1.545617975 0.972402133 1.426892083 1.020458022 0.99665519 1.04340503 1.006220208 1 17.08788186 -6.400405711 12.48976658 1.014250201 1.227760625 0.275422787 0.170275879 0.873616173 85.17857963 0.058732995 0.051788673 3.98E-07 6.400405711 0.213510424 ALRPEAPPPPPPAFSFQEFLPS(ph)LNSSPLDIR ddPTM_HeLa_A486_30min_R1 1 ALRPEAPPPPPPAFSFQEFLPSLNSSPLDIR 31 1 Q9P107;Q9P107-2;K7EJC2 Q9P107 GMIP GEM-interacting protein 1 0 ALRPEAPPPPPPAFS(0.001)FQEFLPS(0.698)LNS(0.151)S(0.151)PLDIR 66.88 0.0014334 32148000 17606 19363 17354 7147.7 21534 17993 17891 18973 16941 20371 TRUE FALSE FALSE 16371.91032 17828.60536 24073.93356 16640.20682 18833.00492 15773.2066 13414.48257 14653.26208 18409.45952 15269.96901 1.072163952 1.167560023 1.576554186 1.089734158 1.233336159 1.032956032 0.878487871 0.959613086 1.20559901 1 13.89840951 -6.286427647 4.094233314 1.000966738 1.238083034 0.329984695 0.150950676 0.258885001 10.13555985 0.055509504 0.05067588 5.17E-07 6.286427647 0.237116295 ALRPEAPPPPPPAFSFQEFLPSLNS(ph)SPLDIR ddPTM_HeLa_A485_30min_R1 1 ALRPEAPPPPPPAFSFQEFLPSLNSSPLDIR 31 1 Q9P107;Q9P107-2;K7EJC2 Q9P107 GMIP GEM-interacting protein 1 0 ALRPEAPPPPPPAFSFQEFLPS(0.028)LNS(0.486)S(0.486)PLDIR 82.65 0.00031977 29377000 5062.9 4537.6 5871.6 5152.9 5761.8 5939.4 5986 5906.4 5967.2 7907.1 TRUE FALSE FALSE 6189.124638 5068.232848 8043.749178 5434.389879 5188.134961 6250.3778 4707.042199 4457.846139 7164.762306 5936.005489 1.042641327 0.853812022 1.355077786 0.915496101 0.874011146 1.052960246 0.792964597 0.750984167 1.20700062 1 12.53527671 ALRPGDLPPS(ph)PDDVKR ddPTM_HeLa_A486_30min_R1 1 ALRPGDLPPSPDDVKR 16 2 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 ALRPGDLPPS(1)PDDVKR 73.294 0.0032601 147080000 116640 129050 88133 44235 120770 117410 149710 129070 107470 150660 TRUE FALSE FALSE 108464.1383 118823.608 122260.4579 102981.3155 105621.9005 102925.1479 112250.9745 99683.57858 116785.5861 112933.7554 0.960422665 1.052153164 1.082585605 0.911873648 0.935255364 0.911376298 0.993954147 0.882673017 1.034106993 1 16.78511724 -5.266929591 24.9871866 0.947124051 1.033763747 0.318909996 0.052412702 458.7109544 2087696.718 0.01400636 0.021452588 5.41E-06 5.266929591 0.086639696 ALRPPT(ph)SPGVFGALQNFK ddPTM_HeLa_A485_30min_R1 2 ALRPPTSPGVFGALQNFK 18 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 ALRPPT(0.5)S(0.5)PGVFGALQNFK;ALRPPT(0.5)S(0.5)PGVFGALQNFK ; 113.51 9.93E-05 458670000 259760 255040 246400 284630 314190 216282 263190 259680 256900 418730 TRUE FALSE FALSE 317542.7158 284864.7094 337553.6136 300178.6162 282908.1404 227606.1911 206957.3064 195993.0728 308457.4736 314348.3172 1.010161972 0.906207204 1.07382033 0.954923567 0.899982996 0.724057291 0.658369379 0.623490129 0.98126014 1 18.26200451 -6.01534478 2.936150201 0.766060476 0.986424481 0.328922097 0.122877153 0.267540189 4.679538764 0.041537128 0.044682026 9.65E-07 6.01534478 0.220364005 ALRPPT(ph)SPGVFGALQNFK ddPTM_HeLa_A486_30min_R1 2 ALRPPTSPGVFGALQNFK 18 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 ALRPPT(0.871)S(0.129)PGVFGALQNFK;ALRPPT(0.5)S(0.5)PGVFGALQNFK ; 176.7 6.77E-13 470890000 263983 298050 244850 95080 266950 290930 297350 269188 246867 291930 TRUE FALSE FALSE 245479.1549 274431.4325 339662.4773 221351.0451 233466.6418 255038.0146 222949.885 207899.7687 268265.6303 218828.8279 1.12178618 1.254091772 1.552183415 1.011525982 1.066891616 1.165468083 1.018832332 0.950056584 1.225915401 1 17.73944328 -5.301364024 24.99162888 1.063221578 1.303827878 0.450631709 0.124770441 461.1163462 288644.0086 0.035125446 0.05210041 5.00E-06 5.301364024 0.2406063 ALS(ph)DREEEEEDDEEEEEEVEAAAQR ddPTM_HeLa_A485_30min_R1 2 ALSDREEEEEDDEEEEEEVEAAAQR 25 1 Q8N3E9 Q8N3E9 PLCD3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3" 1 0 ALS(1)DREEEEEDDEEEEEEVEAAAQR;ALS(1)DREEEEEDDEEEEEEVEAAAQR ; 242.9 1.72E-49 3126100000 356670 331740 216950 450610 288600 306950 507300 338820 339140 929120 TRUE FALSE FALSE 436010.011 370534.1072 297208.833 475225.6833 259865.9707 323021.4274 398911.2107 255723.8638 407202.2872 697507.4832 0.625097252 0.531225996 0.426101282 0.681319835 0.372563703 0.463108189 0.571909579 0.366625262 0.583796299 1 19.41184917 -8.030751964 23.22910438 1.000000003 0.503453223 0.69620878 0.097650603 815.0936087 615696.7863 0.090286838 0.023311961 9.32E-09 8.030751964 -0.49654678 ALS(ph)DREEEEEDDEEEEEEVEAAAQR ddPTM_HeLa_A486_30min_R1 2 ALSDREEEEEDDEEEEEEVEAAAQR 25 1 Q8N3E9 Q8N3E9 PLCD3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3" 1 0 ALS(1)DREEEEEDDEEEEEEVEAAAQR;ALS(1)DREEEEEDDEEEEEEVEAAAQR ; 325.84 5.81E-107 3041800000 173670 214700 181360 65919 285540 271630 230330 239960 297980 300280 TRUE FALSE FALSE 161496.6298 197686.3901 251587.449 153462.7634 249724.9106 238119.0523 172698.9978 185326.3463 323809.1463 225087.9335 0.717482396 0.878262939 1.117729614 0.681790272 1.109454899 1.057893458 0.767251248 0.823350872 1.438589538 1 17.78012919 -2.355445292 0.316603756 1.035229577 2.31E-31 0.151103279 0.203150353 56.78339632 1.75445647 0.200421583 28.72448027 0.004411179 2.355445292 -1.035229577 ALS(ph)DREEEEEDDEEEEEEVEAAAQRR ddPTM_HeLa_A485_30min_R1 3 ALSDREEEEEDDEEEEEEVEAAAQRR 26 2 Q8N3E9 Q8N3E9 PLCD3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3" 1 0 ALS(1)DREEEEEDDEEEEEEVEAAAQRR;ALS(1)DREEEEEDDEEEEEEVEAAAQRR;ALS(1)DREEEEEDDEEEEEEVEAAAQRR ;; 257.07 2.36E-62 456007000 45093 59957 37773.2 38758.8 60433 68404 79782 109861 47983 77555 TRUE FALSE FALSE 55123.78228 66968.44959 51747.07855 40876.0951 54416.07833 71985.52767 62735.92394 82917.41749 57612.74797 58221.96579 0.94678669 1.150226528 0.888789615 0.702073428 0.934631416 1.236398096 1.077530157 1.42416039 0.989536289 1 15.82927593 -6.248090849 22.20022951 1.16778531 0.922700602 0.331896089 0.155184844 198.0042313 329304.0869 0.052119522 0.051723397 5.65E-07 6.248090849 -0.245084709 ALS(ph)GHSAADR ddPTM_HeLa_A485_30min_R1 3 ALSGHSAADR 10 0 A0A0U1RQE4 A0A0U1RQE4 1 0 ALS(1)GHSAADR;ALS(1)GHSAADR;ALS(1)GHSAADR ;; 125.82 8.08E-05 1359360000 686050 945710 810750 812830 793500 838250 867170 844370 825580 1123600 TRUE FALSE FALSE 838659.4557 1056302.558 1110680.163 857232.8447 714496.3539 882139.4738 681892.0454 637286.9336 991266.3333 843507.1983 0.994252873 1.252274503 1.316740587 1.016272115 0.847054246 1.04579958 0.80840098 0.755520445 1.175172346 1 19.68604085 -5.47130941 5.819830158 0.925426661 1.192346972 0.393199157 0.137693015 0.19792172 15.42672105 0.038912202 0.057105142 3.38E-06 5.47130941 0.266920311 ALS(ph)GHSAADR ddPTM_HeLa_A486_30min_R1 4 ALSGHSAADR 10 0 A0A0U1RQE4 A0A0U1RQE4 1 0 ALS(1)GHSAADR;ALS(1)GHSAADR;ALS(1)GHSAADR;ALS(1)GHSAADR ;;; 132.59 4.79E-05 2155900000 1272960 1390870 1032370 318485 1125320 1166940 1139420 1069710 1146920 1389270 TRUE FALSE FALSE 1183732.078 1280652.396 1432131.312 741449.1753 984171.8724 1022974.807 854325.0644 826160.3846 1246335.949 1041387.749 1.136687155 1.22975558 1.375214288 0.711981849 0.945058047 0.982318841 0.820371725 0.793326391 1.196802968 1 19.99007591 -5.253991034 24.99841154 0.912110601 1.245472668 0.544085262 0.13648462 425.0311001 1426501.326 0.036564177 0.061743543 5.57E-06 5.253991034 0.333362067 ALS(ph)GHSAADRNER ddPTM_HeLa_A485_30min_R1 4 ALSGHSAADRNER 13 1 A0A0U1RQE4 A0A0U1RQE4 1 0 ALS(1)GHSAADRNER;ALS(1)GHSAADRNER;ALS(1)GHSAADRNER;ALS(0.999)GHS(0.001)AADRNER ;;; 188.59 1.13E-17 3720340000 685510 998500 1089740 805950 1614690 1190200 1483300 1884940 1143400 1317330 TRUE FALSE FALSE 837999.3345 1115265.889 1492880.174 849977.0077 1453925.794 1252517.032 1166380.838 1422655.51 1372869.892 988943.8747 0.847367941 1.127734261 1.509570171 0.859479521 1.470180292 1.266519834 1.17942066 1.438560414 1.388218207 1 19.91552912 -4.374749687 3.620936658 1.271951912 0.841261579 0.28615257 0.198286732 0.289232125 6.099938027 0.047644717 0.267125115 4.22E-05 4.374749687 -0.430690333 ALS(ph)GHSAADRNER ddPTM_HeLa_A486_30min_R1 5 ALSGHSAADRNER 13 1 A0A0U1RQE4 A0A0U1RQE4 1 0 ALS(1)GHSAADRNER;ALS(0.997)GHS(0.003)AADRNER;ALS(1)GHSAADRNER;ALS(1)GHSAADRNER;ALS(0.93)GHS(0.07)AADRNER ;;;; 182.7 1.93E-17 3717280000 1072569 1160696 1244501 540666 1963325 1176049 1565058 1710272 1116417 1422090 TRUE FALSE FALSE 997387.4519 1068718.222 1726405.116 1258697.772 1717066.471 1030960.032 1173463.935 1320880.401 1213188.924 1065989.408 0.935644805 1.002559889 1.619533087 1.180778873 1.610772545 0.967139095 1.100821384 1.239112125 1.138087223 1 20.02376167 ALS(ph)GRAS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_A485_30min_R1 1 ALSGRASPVPAPSSGLHAAVR 21 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 2 0 ALS(1)GRAS(0.463)PVPAPS(0.405)S(0.132)GLHAAVR 78.607 0.0039044 583050000 434630 633950 727040 285050 1037900 560980 799070 799530 721620 842930 TRUE FALSE FALSE 531311.944 708084.9379 996002.3507 300621.5597 934563.0317 590352.0454 628342.1667 603444.0139 866442.5149 632803.064 0.839616579 1.118965723 1.57395311 0.475063376 1.476862368 0.932915909 0.992950576 0.95360476 1.369213527 1 19.27139706 ALS(ph)GRAS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_A486_30min_R1 3 ALSGRASPVPAPSSGLHAAVR 21 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 2 0 ALS(1)GRAS(0.836)PVPAPS(0.13)S(0.034)GLHAAVR;ALS(0.999)GRAS(0.98)PVPAPS(0.011)S(0.01)GLHAAVR;ALS(1)GRAS(0.996)PVPAPS(0.001)S(0.003)GLHAAVR ;; 96.387 0.00075439 1245660000 1696810 1619360 1395990 110771 2094960 1455320 1920030 2097610 1533720 1130990 TRUE FALSE FALSE 1577872.381 1491036.016 1936554.714 257880.4861 1832190.582 1275777.415 1439618.186 1620029.994 1666664.084 847782.7425 1.861175396 1.75874778 2.284258238 0.304182278 2.161155789 1.504840039 1.698098008 1.910902301 1.965909426 1 19.69333507 ALS(ph)GRASPVPAPSSGLHAAVR ddPTM_HeLa_A485_30min_R1 1 ALSGRASPVPAPSSGLHAAVR 21 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 ALS(0.693)GRAS(0.307)PVPAPSSGLHAAVR 193.81 5.07E-20 737920000 430470 1071500 948900 237050 1056300 937730 1011900 1293700 797950 569160 TRUE FALSE FALSE 526226.5664 1196802.604 1299937.597 249999.4413 951131.0631 986828.0928 795699.2985 976418.0466 958091.2458 427278.8866 1.231576338 2.800986994 3.042363285 0.585096641 2.226019335 2.309564371 1.862248109 2.285200784 2.24230889 1 18.7048185 -10.42053993 2.901656832 0.977435895 2.084340411 0.181400813 0.677624623 68698257.3 79554082.9 12761852.42 0.165492451 3.80E-11 10.42053993 1.106904516 ALS(ph)GTSPDDVQPGPSVGPPSK ddPTM_HeLa_A485_30min_R1 1 ALSGTSPDDVQPGPSVGPPSK 21 0 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.333)GT(0.333)S(0.333)PDDVQPGPSVGPPSK 144.68 1.17E-11 0 36591 33538 26599 49424 49424 42503 47368 43473 36234 68363 TRUE FALSE FALSE 44730.54171 37459.97736 36439.07698 52123.90797 44503.17302 44728.39136 37247.43984 32811.17859 43505.83144 51321.36223 0.871577444 0.729910036 0.710017727 1.015637655 0.867147151 0.871535544 0.725768729 0.639327897 0.847713887 1 15.64727184 -9.341501892 14.22407487 1 0.805742734 0.234427204 0.103563736 0 0 0.106717412 0.025882774 4.56E-10 9.341501892 -0.194257266 ALS(ph)IESLSPTDSSNGVNWR ddPTM_HeLa_A485_30min_R1 4 ALSIESLSPTDSSNGVNWR 19 0 Q9Y3M8-4;H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-2;Q9Y3M8 Q9Y3M8-4 STARD13 StAR-related lipid transfer protein 13 1 0 ALS(0.985)IES(0.015)LSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR;ALS(0.999)IES(0.001)LSPTDSSNGVNWR ;;; 320.5 6.64E-90 748705000 333330 468499 419238 335152 536305 407061 519748 552083 369519 463347 TRUE FALSE FALSE 407478.1085 523285.8827 574331.5821 353460.5051 482908.5911 428374.0845 408699.5938 416683.7786 443678.0739 347843.1202 1.171442196 1.504373243 1.651122442 1.016149191 1.388294214 1.231515185 1.174953794 1.197907201 1.275512 1 18.40807726 -7.485542501 0.179092307 0.897606901 1.516191876 0.265618962 0.166212277 4.557307163 0.846080191 1.192526914 1.15650333 3.27E-08 7.485542501 0.618584976 ALS(ph)IESLSPTDSSNGVNWR ddPTM_HeLa_A486_30min_R1 4 ALSIESLSPTDSSNGVNWR 19 0 Q9Y3M8-4;H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-2;Q9Y3M8 Q9Y3M8-4 STARD13 StAR-related lipid transfer protein 13 1 0 ALS(1)IESLSPTDSSNGVNWR;ALS(0.999)IES(0.001)LSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR;ALS(1)IESLSPTDSSNGVNWR ;;; 290.92 5.54E-73 667197000 397828 457612 384456 163416.5 535338 406206 470152 500496 388304 420645 TRUE FALSE FALSE 369942.3116 421349.1585 533327.6593 380441.8706 468190.9162 356092.4337 352514.9968 386543.9866 421962.5034 315312.7541 1.173255147 1.336289614 1.691424316 1.206554019 1.48484611 1.129330892 1.117985214 1.225906601 1.33823481 1 18.266424 -6.271082643 24.83687038 1.173641515 1.38396531 0.318856861 0.157445079 819.1128642 2109674.148 0.055097567 0.04922435 5.36E-07 6.271082643 0.210323795 ALS(ph)LDDKGWR ddPTM_HeLa_A486_30min_R1 1 ALSLDDKGWR 10 1 Q9NRR6-2;Q9NRR6 Q9NRR6-2 INPP5E 72 kDa inositol polyphosphate 5-phosphatase 1 0 ALS(1)LDDKGWR 155.08 1.07E-06 191860000 274840 281560 163160 145840 291550 325550 413020 377970 216320 359370 TRUE FALSE FALSE 255575.1353 259248.1602 226339.9216 339522.8903 254981.0804 285386.9509 309678.0275 291914.482 235070.7918 269381.4129 0.948748217 0.962383252 0.840221005 1.260379796 0.946542962 1.059415896 1.14958944 1.083647453 0.872631817 1 18.03929078 -5.208770474 24.99999848 1.056493254 0.921644106 0.262024901 0.104447241 459.2387775 217983.0521 0.027579523 0.047769051 6.18E-06 5.208770474 -0.134849148 ALS(ph)LGTIPSLTR ddPTM_HeLa_A485_30min_R1 1 ALSLGTIPSLTR 12 0 Q5SNT2;H0Y4R5;H0Y994 Q5SNT2 TMEM201 Transmembrane protein 201 1 0 ALS(0.999)LGT(0.001)IPSLTR 85.554 0.0028462 113600000 82996 129930 165830 62822 139700 90976 88706 137890 133500 126840 TRUE FALSE FALSE 101458.1739 145124.1833 227177.4178 66253.80679 125790.9775 95739.36268 69753.23844 104072.2613 160292.2255 95221.12232 1.065500715 1.524075538 2.385788071 0.695788972 1.321040694 1.005442494 0.732539554 1.092953525 1.68336837 1 16.53899401 -5.287533244 24.99824909 1.072724076 1.645017248 0.307757645 0.400223232 912.7352018 874409.7209 0.113934115 0.16905113 5.16E-06 5.287533244 0.572293173 ALS(ph)PAELR ddPTM_HeLa_A485_30min_R1 4 ALSPAELR 8 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 ALS(1)PAELR;ALS(1)PAELR;ALS(1)PAELR;ALS(1)PAELR ;;; 133.44 0.00051039 566610000 1097650 1342360 1009790 1064790 1052930 1252300 1319900 1392360 1142830 1987440 TRUE FALSE FALSE 1341818.456 1499337.325 1383353.342 1122956.782 948096.5921 1317868.492 1037892.582 1050881.527 1372185.498 1492007.784 0.899337436 1.004912535 0.927175687 0.752648072 0.635450165 0.883285265 0.695634831 0.704340512 0.919690576 1 20.50882363 -5.195796264 5.274436288 0.778909467 0.95354233 0.258372383 0.109205443 0.244299297 13.45209339 0.028684882 0.050341556 6.37E-06 5.195796264 0.174632863 ALS(ph)PAELR ddPTM_HeLa_A486_30min_R1 4 ALSPAELR 8 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 ALS(1)PAELR;ALS(1)PAELR;ALS(1)PAELR;ALS(1)PAELR ;;; 133.23 0.0005131 561340000 695950 826010 815890 200176 1097640 817890 729020 752200 847940 946780 TRUE FALSE FALSE 647167.4989 760553.9593 1131824.458 466019.8443 959963.7561 716987.0475 546611.4852 580940.4804 921440.1219 709700.1255 0.911888663 1.071655382 1.594792529 0.656643317 1.352632924 1.010267607 0.770200632 0.818571759 1.298351358 1 19.43685004 -6.5126288 24.37953529 0.947172227 1.122441514 0.060878416 0.267199896 952.1085377 2264606.383 0.095956477 0.079156042 3.07E-07 6.5126288 0.175269287 ALS(ph)PEGALR ddPTM_HeLa_A486_30min_R1 1 ALSPEGALR 9 0 K7EPS7;I3L2Z9;I3L100;I3L2W2;Q96JN8-2;Q96JN8 K7EPS7 NEURL4 Neuralized-like protein 4 1 0 ALS(1)PEGALR 121.36 0.00039734 47401000 77063 92385 78419 28181 96389 79939 84035 87413 78549 82921 TRUE FALSE FALSE 71661.28165 85064.07614 108784.9369 65606.79219 84298.99283 70076.93894 63008.55417 67510.96811 85357.69056 62157.04187 1.152906887 1.36853482 1.750162711 1.055500555 1.356225945 1.127417535 1.01369937 1.086135474 1.373258572 1 15.92363023 -5.309866681 24.99994777 1.15084125 1.418336254 0.331130798 0.181681217 454.0876822 234415.8174 0.051532449 0.07643516 4.90E-06 5.309866681 0.267495004 ALS(ph)PEGALRR ddPTM_HeLa_A485_30min_R1 2 ALSPEGALRR 10 1 K7EPS7;I3L2Z9;I3L100;I3L2W2;Q96JN8-2;Q96JN8 K7EPS7 NEURL4 Neuralized-like protein 4 1 0 ALS(1)PEGALRR;ALS(1)PEGALRR ; 155.86 1.14E-06 334850000 200620 282590 271910 191310 337020 259380 300290 359760 232980 249380 TRUE FALSE FALSE 245247.2269 315636.4423 372500.8241 201760.7809 303465.1055 272960.7357 236130.5884 271528.2959 279736.949 187214.1555 1.309982283 1.685964619 1.989704374 1.077700457 1.62095171 1.458013338 1.261285973 1.450361994 1.494208321 1 17.51433 -12.31239374 0.154434003 3.18E-15 1.657179517 0.288182562 0.234452948 94.10762233 1.383268828 31.78165171 1.204300966 4.87E-13 12.31239374 1.657179517 ALS(ph)PEGALRR ddPTM_HeLa_A486_30min_R1 2 ALSPEGALRR 10 1 K7EPS7;I3L2Z9;I3L100;I3L2W2;Q96JN8-2;Q96JN8 K7EPS7 NEURL4 Neuralized-like protein 4 1 0 ALS(1)PEGALRR;ALS(1)PEGALRR ; 166.7 2.32E-07 479460000 322860 342870 313480 117250 433370 307740 365490 401940 263710 312970 TRUE FALSE FALSE 300229.1813 315699.7325 434867.8513 272963.9255 379012.6936 269774.1677 274040.5362 310427.0363 286568.5951 234600.2749 1.279747781 1.345692082 1.853654483 1.163527731 1.615567986 1.149931166 1.168116859 1.323216848 1.221518582 1 17.83984518 -6.279286108 24.56679588 1.192480234 1.452080255 0.34269987 0.192264803 830.5676262 1143308.363 0.066035667 0.058366896 5.26E-07 6.279286108 0.259600021 ALS(ph)PGLEESGLGLLAR ddPTM_HeLa_A485_30min_R1 5 ALSPGLEESGLGLLAR 16 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR ;;;; 316.8 2.41E-78 956160000 159452 182197 185343 156816 231272 178073 215201 215256 182643 206701 TRUE FALSE FALSE 194921.5473 203503.3542 253909.0885 165382.461 208245.7476 187396.6269 169221.5483 162464.1285 219297.7748 155174.2447 1.256146261 1.311450586 1.636283707 1.065785506 1.342012316 1.207652902 1.090525999 1.046978696 1.413235651 1 17.2435296 -5.829456855 1.191120662 1.150147518 1.369108859 0.220858845 0.165449805 0.71992481 2.161584674 0.069474063 0.094604181 1.48E-06 5.829456855 0.218961341 ALS(ph)PGLEESGLGLLAR ddPTM_HeLa_A486_30min_R1 6 ALSPGLEESGLGLLAR 16 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR ;;;;; 293.52 1.88E-67 1022276000 191216 224877 204334 74612.1 253346 194616 217165 225497 179260 204761 TRUE FALSE FALSE 177812.7458 207056.9275 283457.5971 173700.7395 221568.9823 170606.2566 162828.0201 174156.2557 194798.4011 153487.5128 1.158483466 1.349014807 1.846779532 1.131692972 1.443563572 1.111531834 1.060855161 1.134660745 1.269148203 1 17.22776176 -6.266591861 24.37473597 1.120256464 1.395338357 0.327851471 0.193474107 383.4622519 1814029.203 0.067780392 0.061597286 5.41E-07 6.266591861 0.275081893 ALS(ph)PLPTR ddPTM_HeLa_A485_30min_R1 1 ALSPLPTR 8 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ALS(0.998)PLPT(0.002)R 103.88 0.0015724 156970000 269420 338010 328810 301100 449330 318790 398500 405430 418040 501830 TRUE FALSE FALSE 329351.5495 377537.3292 450450.5019 317548.3306 404593.1275 335481.3515 313357.2196 305997.6568 501936.7935 376733.0165 0.874230649 1.002134967 1.19567567 0.842900188 1.07395187 0.890501593 0.831775305 0.812240084 1.332340866 1 18.52318295 -7.756412572 24.99999016 1.166170427 0.946905694 0.302791408 0.136738048 144.1594258 716981.1166 0.098983875 0.034804162 1.75E-08 7.756412572 -0.219264733 ALS(ph)PLPTR ddPTM_HeLa_A486_30min_R1 2 ALSPLPTR 8 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ALS(1)PLPTR;ALS(1)PLPTR ; 136.57 0.00047103 705900000 783130 1236870 1270400 384040 1499380 1024910 1188320 1041120 1034130 1009640 TRUE FALSE FALSE 728236.6311 1138855.917 1762332.902 894064.5283 1311313.779 898467.0247 890989.7672 804079.7035 1123769.221 756819.5723 0.96223282 1.50479184 2.328603761 1.181344353 1.732663672 1.187161455 1.177281613 1.062445704 1.484857504 1 19.52958987 -6.279663625 23.16865829 1.185935271 1.563536052 0.202409324 0.355566061 527.0692861 670064.7278 0.125926717 0.111338406 5.25E-07 6.279663625 0.377600781 ALS(ph)PVIPLIPR ddPTM_HeLa_A485_30min_R1 4 ALSPVIPLIPR 11 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR ;;; 176.18 9.79E-09 2652000000 600970 777850 809800 617750 899050 747820 867640 983870 709070 780420 TRUE FALSE FALSE 734653.7032 868812.7911 1109378.719 651496.1183 809537.4252 786974.6989 682261.626 742574.3399 851373.845 585875.6566 1.253941335 1.482930348 1.893539535 1.112004076 1.381756378 1.34324526 1.164516085 1.267460649 1.453164738 1 19.16023498 -5.295021604 24.99109854 1.263475839 1.5374168 0.332401332 0.192004724 748.1337711 556741.8754 0.053558506 0.079445002 5.07E-06 5.295021604 0.273940961 ALS(ph)PVIPLIPR ddPTM_HeLa_A486_30min_R1 6 ALSPVIPLIPR 11 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR;ALS(1)PVIPLIPR ;;;;; 232.56 7.72E-19 3396143000 1124948 1297850 1145832 456588 1503530 1137875 1295593 1303250 1059363 1212885 TRUE FALSE FALSE 1046094.954 1195003.639 1589528.837 1062959.939 1314943.248 997495.5516 971421.928 1006528.425 1151189.438 909170.7014 1.15060346 1.314388637 1.748328267 1.169153314 1.446310627 1.097148808 1.068470339 1.107084097 1.266197245 1 19.79419167 -6.269418322 24.67152919 1.112015977 1.37323462 0.372903799 0.167084722 572.9955938 1771742.487 0.058584524 0.052617169 5.38E-07 6.269418322 0.261218642 ALS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 ALSPVR 6 0 Q02535 Q02535 ID3 DNA-binding protein inhibitor ID-3 1 0 ALS(1)PVR;ALS(1)PVR;ALS(1)PVR;ALS(1)PVR ;;; 81.215 0.020665 3820567000 1433499 1626940 1880870 1883625 2316830 1671578 1981930 1615278 2065050 2670820 TRUE FALSE FALSE 1752375.907 1817196.481 2576682.083 1986522.664 2086158.27 1759099.239 1558474.465 1219128.538 2479486.593 2005033.727 0.873988244 0.906317164 1.285106603 0.990767705 1.040460438 0.877341471 0.777280922 0.608033931 1.236630866 1 20.93519507 -6.277683501 8.506270966 0.867508196 1.02627272 0.082636651 0.183140156 0.459447125 208.0360849 0.063677797 0.05772477 5.28E-07 6.277683501 0.158764524 ALS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 ALSPVR 6 0 Q02535 Q02535 ID3 DNA-binding protein inhibitor ID-3 1 0 ALS(1)PVR;ALS(1)PVR ; 106.38 0.0099902 5037300000 2521250 3486750 2805440 894620 3495380 3143590 3274290 3291090 2930060 3199460 TRUE FALSE FALSE 2344523.395 3210447.231 3891781.5 2082720.572 3056956.847 2755765.827 2455028.01 2541780.651 3184039.96 2398294.391 0.977579485 1.338637677 1.622728851 0.868417397 1.274637867 1.149052359 1.023655819 1.05982846 1.327626822 1 21.19357733 -5.273051888 24.99989603 1.109034628 1.315547594 0.205147879 0.191159719 1188.220621 2558048.761 0.053430093 0.079979685 5.33E-06 5.273051888 0.206512966 ALS(ph)PVRGCYEAVCCLSER ddPTM_HeLa_A485_30min_R1 4 ALSPVRGCYEAVCCLSER 18 1 Q02535 Q02535 ID3 DNA-binding protein inhibitor ID-3 1 0 ALS(1)PVRGCYEAVCCLSER;ALS(1)PVRGCYEAVCCLSER;ALS(1)PVRGCYEAVCCLSER;ALS(1)PVRGCYEAVCCLSER ;;; 233.15 6.36E-36 1591260000 251231 354882 346574 180665 480318 424010 563390 822340 275638 284109 TRUE FALSE FALSE 307116.4692 396382.3628 474786.1447 190534.2715 432495.8534 446210.508 443017.124 620659.8256 330956.0183 213285.8549 1.439928913 1.858455934 2.226055473 0.893328212 2.027775604 2.092077358 2.077105039 2.909990565 1.551701675 1 17.70242876 -5.954276086 24.999969 2.055536027 1.641182477 0.059321727 0.555785173 284.899343 155769.9715 0.166966856 0.189322525 1.11E-06 5.954276086 -0.41435355 ALS(ph)PVRGCYEAVCCLSER ddPTM_HeLa_A486_30min_R1 2 ALSPVRGCYEAVCCLSER 18 1 Q02535 Q02535 ID3 DNA-binding protein inhibitor ID-3 1 0 ALS(1)PVRGCYEAVCCLSER;ALS(1)PVRGCYEAVCCLSER ; 240.95 1.17E-45 748160000 97377 122703 162720 61132 249830 141809 185729 203280 107134 153890 TRUE FALSE FALSE 90551.37516 112979.5674 225729.5418 142318.3854 218493.9918 124314.0474 139257.6398 156997.5816 116420.4614 115354.9423 0.784980455 0.979408122 1.956825925 1.233743284 1.894101695 1.07766555 1.207209998 1.360995709 1.009236874 1 16.81572029 -7.757573983 1.219921199 0.980297738 1.342984306 0.092363797 0.35243604 1.101136085 3.355861988 0.340185913 0.110052993 1.75E-08 7.757573983 0.362686569 ALS(ph)PVTSR ddPTM_HeLa_A485_30min_R1 4 ALSPVTSR 8 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR72;A0A0A0MR80 Q96L91-3 EP400 E1A-binding protein p400 1 0 ALS(0.999)PVT(0.001)SR;ALS(0.994)PVT(0.005)SR;ALS(0.996)PVT(0.003)SR;ALS(0.999)PVT(0.001)SR ;;; 183.27 6.96E-06 3316220000 3162840 4420450 4395880 3280120 4969670 4037350 4437560 5027320 4006010 4494540 TRUE FALSE FALSE 3866402.846 4937383.175 6022098.94 3459304.65 4474872.205 4248739.403 3489439.054 3794361.887 4809979.462 3374133.894 1.145894908 1.463303867 1.78478363 1.025242257 1.326228403 1.259208892 1.034173262 1.124543959 1.425544929 1 21.68608579 -5.284517296 24.99658522 1.180374157 1.464525215 0.326606814 0.193075599 922.9787058 999711.9688 0.054450453 0.080820049 5.19E-06 5.284517296 0.284151058 ALS(ph)PVTSR ddPTM_HeLa_A486_30min_R1 4 ALSPVTSR 8 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR72;A0A0A0MR80 Q96L91-3 EP400 E1A-binding protein p400 1 0 ALS(1)PVTSR;ALS(0.999)PVT(0.001)SR;ALS(1)PVTSR;ALS(1)PVTSR ;;; 195.57 2.80E-06 2692970000 2862600 3141620 2636870 868710 3431210 2690590 2921430 3066100 2545680 2859500 TRUE FALSE FALSE 2661946.522 2892666.59 3657936.682 2022400.782 3000835.647 2358652.362 2190457.314 2368015.962 2766341.592 2143462.588 1.241890825 1.349529778 1.706554947 0.943520449 1.399994413 1.100393529 1.021924678 1.104761975 1.290594764 1 21.03151181 -5.272825203 24.99949362 1.133776841 1.424345659 0.414842278 0.168093415 733.9277607 1611460.706 0.046813731 0.070120695 5.34E-06 5.272825203 0.290568818 ALS(ph)SAGPIPIRPPIVPVK ddPTM_HeLa_A485_30min_R1 2 ALSSAGPIPIRPPIVPVK 18 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 ALS(0.5)S(0.5)AGPIPIRPPIVPVK;ALS(0.5)S(0.5)AGPIPIRPPIVPVK ; 242.16 1.05E-45 1242720000 902080 715780 691140 1028350 1163660 712360 1087100 883460 867820 1359800 TRUE FALSE FALSE 1102744.584 799484.2445 946821.4467 1084526.157 1047801.925 749658.0681 854832.2042 666790.0498 1041983.514 1020826.885 1.080246416 0.783173186 0.927504419 1.06239968 1.026424695 0.734363562 0.837391938 0.653186215 1.020724992 1 19.9613068 -6.253046129 24.9678071 0.826723641 0.967351248 0.182497978 0.129305526 969.1093533 2882858.271 0.042222619 0.04155059 5.58E-07 6.253046129 0.140627607 ALS(ph)SAGPIPIRPPIVPVK ddPTM_HeLa_A486_30min_R1 2 ALSSAGPIPIRPPIVPVK 18 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 ALS(0.899)S(0.101)AGPIPIRPPIVPVK;ALS(0.5)S(0.5)AGPIPIRPPIVPVK ; 223.51 8.32E-35 1921290000 306560 357580 223510 124850 333390 374270 449790 441650 248090 306570 TRUE FALSE FALSE 285071.7271 329244.0585 310059.0578 290657.1096 291573.1175 328096.3727 337247.7846 341095.9362 269594.641 229802.8766 1.240505477 1.432723835 1.349239237 1.26481058 1.268796639 1.427729616 1.467552494 1.484297939 1.173156076 1 17.81003733 -7.989074254 5.261036946 1.000462777 1.366385632 0.671890895 0.082820099 0.08683389 7.966977196 0.085654725 0.022299049 1.03E-08 7.989074254 0.365922855 ALS(ph)SDSILSPAPDAR ddPTM_HeLa_A485_30min_R1 9 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 ALS(0.498)S(0.498)DS(0.003)ILSPAPDAR;ALS(0.499)S(0.499)DS(0.003)ILSPAPDAR;ALS(0.886)S(0.114)DSILSPAPDAR;ALS(0.562)S(0.438)DSILSPAPDAR;ALS(0.998)S(0.002)DSILSPAPDAR;ALS(0.911)S(0.089)DSILSPAPDAR;ALS(0.498)S(0.498)DS(0.004)ILSPAPDAR;ALS(0.499)S(0.499)DS(0.001)ILSPAPDAR;ALS(0.93)S(0.067)DS(0.002)ILS(0.001)PAPDAR ;;;;;;;; 430.43 1.25E-171 28591830000 2206900 2407075 2181252 2444986 2856084 2254304 2800942 2804977 2320826 3178022 TRUE FALSE FALSE 2697817.291 2688561.482 2988187.884 2578549.394 2571722.249 2372335.872 2202497.86 2117051.993 2786594.49 2385799.603 1.130781181 1.126901639 1.252489053 1.080790437 1.077928861 0.994356722 0.923169682 0.88735533 1.167991849 1 21.18604144 -5.883539831 1.764809613 0.983544209 1.162539284 0.465032961 0.078509457 0.299454978 1.916704111 0.028864104 0.034777481 1.31E-06 5.883539831 0.178995075 ALS(ph)SDSILSPAPDAR ddPTM_HeLa_A486_30min_R1 6 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 ALS(0.997)S(0.003)DSILSPAPDAR;ALS(0.997)S(0.003)DSILSPAPDAR;ALS(0.879)S(0.121)DS(0.001)ILSPAPDAR;ALS(0.5)S(0.5)DS(0.001)ILSPAPDAR;ALS(0.991)S(0.009)DSILSPAPDAR;ALS(0.979)S(0.021)DSILSPAPDAR ;;;;; 388.32 2.65E-134 5261070000 1133018 1478896 1143885 430099 1549026 1331568 1572911 1664540 1307789 1413527 TRUE FALSE FALSE 1053599.289 1361702.895 1586827.906 1001292.208 1354732.715 1167292.679 1179352.031 1285560.579 1421149.204 1059570.639 0.994364369 1.285145931 1.497614079 0.944998069 1.278567625 1.101665746 1.113047104 1.213284449 1.34125008 1 20.01504834 -5.270459445 24.96544061 1.153541857 1.261651915 0.099049904 0.159218197 1617.394024 4476569.354 0.044380069 0.066898682 5.36E-06 5.270459445 0.108110058 ALS(ph)SSVIR ddPTM_HeLa_A485_30min_R1 1 ALSSSVIR 8 0 Q8NEJ9-2;Q8NEJ9;H0YJ17 Q8NEJ9-2 NGDN Neuroguidin 1 0 ALS(0.451)S(0.275)S(0.275)VIR 88.819 0.0041631 58352000 110210 149700 158700 99931 173130 144480 150060 161540 130590 154310 TRUE FALSE FALSE 134725.8343 167206.1128 217409.7341 105389.9775 155892.5693 152044.7494 117998.4551 121922.0617 156798.2152 115843.3569 1.163000088 1.443381108 1.876756164 0.909762807 1.34571868 1.312502965 1.018603555 1.052473487 1.353536529 1 16.82181579 -5.277279784 24.97813806 1.154462213 1.489279376 0.354828303 0.217367289 908.0124184 1431808.632 0.061531086 0.091598583 5.28E-06 5.277279784 0.334817163 ALS(ph)SSVIR ddPTM_HeLa_A486_30min_R1 2 ALSSSVIR 8 0 Q8NEJ9-2;Q8NEJ9;H0YJ17 Q8NEJ9-2 NGDN Neuroguidin 1 0 ALS(0.443)S(0.279)S(0.279)VIR;ALS(0.455)S(0.272)S(0.272)VIR ; 111.95 0.0011394 108116000 291820 368840 362220 110062 449910 313720 350000 366310 297370 328930 TRUE FALSE FALSE 271364.925 339611.7751 502481.2846 256229.8982 393478.0926 275016.4161 262426.2981 282909.2095 323146.271 246563.787 1.100587107 1.37737897 2.037936271 1.039203288 1.595847052 1.115396626 1.06433431 1.147407788 1.310599074 1 17.9116014 -6.279037056 24.16839746 1.132809675 1.439298696 0.241879164 0.267574843 811.7339651 1114819.858 0.093814808 0.082937436 5.26E-07 6.279037056 0.306489021 ALS(ph)TPVVEKR ddPTM_HeLa_A485_30min_R1 1 ALSTPVVEKR 10 1 E5RK24;E5RIW4;E5RH41;P29084 E5RK24 GTF2E2 Transcription initiation factor IIE subunit beta 1 0 ALS(0.5)T(0.5)PVVEKR 113.38 0.00034459 344400000 317880 371220 285260 305680 465440 434670 488620 532300 297730 456300 TRUE FALSE FALSE 388591.3093 414630.9498 390789.5447 322378.5244 419099.1593 457428.6491 384222.3453 401752.5904 357481.6801 342552.8076 1.134398261 1.210414688 1.140815477 0.941106064 1.223458544 1.335352211 1.121644129 1.172819435 1.043581229 1 18.38596688 -10.02601807 5.094216534 0.999998357 1.150481784 0.162142551 0.100021625 1.94E-06 3.72E-07 0.100821941 0.024452645 9.42E-11 10.02601807 0.150483428 ALS(ph)TPVVEKR ddPTM_HeLa_A486_30min_R1 2 ALSTPVVEKR 10 1 E5RK24;E5RIW4;E5RH41;P29084 E5RK24 GTF2E2 Transcription initiation factor IIE subunit beta 1 0 ALS(0.5)T(0.5)PVVEKR;ALS(0.5)T(0.5)PVVEKR ; 88.338 0.0016278 0 741960 677990 502720 277050 836950 651140 831230 841020 531830 820780 TRUE FALSE FALSE 689952.4355 624263.6032 697386.6473 644986.4013 731971.9268 570808.9671 623247.4621 649538.1053 577929.4526 615251.3456 1.121415565 1.014648091 1.133498776 1.048329932 1.189712029 0.927765492 1.012996504 1.055728053 0.939338787 1 19.23081638 -6.271737466 24.96384083 0.992263195 1.095516112 0.509051006 0.055884686 638.6798083 1548234.526 0.018883283 0.016821384 5.35E-07 6.271737466 0.103252917 ALS(ph)TWK ddPTM_HeLa_A486_30min_R1 2 ALSTWK 6 0 P00491;G3V5M2 P00491 PNP Purine nucleoside phosphorylase 1 0 ALS(0.97)T(0.03)WK;ALS(0.97)T(0.03)WK ; 82.279 0.019912 282000000 332750 427530 263541 173545 417910 445950 508600 470200 297710 441690 TRUE FALSE FALSE 309425.9433 393650.9658 365591.1331 404021.5305 365491.8309 390933.2231 381342.9006 363145.7244 323515.7425 331087.9491 0.934573258 1.188961926 1.104211537 1.220284615 1.10391161 1.180753405 1.151787317 1.096825558 0.97712932 1 18.33685497 -7.663618555 3.959762316 0.987799784 1.132301972 0.346488204 0.074055529 0.228850909 6.407467474 0.056157308 0.018297146 2.17E-08 7.663618555 0.144502187 ALSAS(ph)HTDLAH ddPTM_HeLa_A485_30min_R1 5 ALSASHTDLAH 11 0 Q07866-4;Q07866-6;Q07866-7;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 ALSAS(1)HTDLAH;ALSAS(1)HTDLAH;ALSAS(1)HTDLAH;ALSAS(0.999)HT(0.001)DLAH;ALSAS(1)HTDLAH ;;;; 186.46 9.37E-11 6358590000 3134620 4287820 4382840 2463520 4723600 3760020 4355420 4852140 3780070 3177550 TRUE FALSE FALSE 3831905.405 4789243.25 6004234.901 2598095.86 4253301.798 3956888.833 3424848.936 3662145.057 4538695.376 2385445.263 1.606369034 2.007693626 2.517028998 1.089145033 1.783022173 1.658763206 1.435727321 1.535203978 1.902661715 1 21.18582715 -10.92394175 0.119530931 1.82E-11 2.179752262 0.280073266 0.355880495 79.75269062 1.391896444 28.38233661 4.533679186 1.19E-11 10.92394175 2.179752262 ALSAS(ph)HTDLAH ddPTM_HeLa_A486_30min_R1 7 ALSASHTDLAH 11 0 Q07866-4;Q07866-6;Q07866-7;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 ALSAS(0.999)HT(0.001)DLAH;ALSAS(0.999)HT(0.001)DLAH;ALSAS(1)HTDLAH;ALS(0.001)AS(0.933)HT(0.066)DLAH;ALSAS(1)HTDLAH;ALS(0.013)AS(0.94)HT(0.047)DLAH;ALS(0.016)AS(0.79)HT(0.194)DLAH ;;;;;; 224.03 4.02E-18 12702100000 5307500 6730090 6679200 1238760 7849110 5449050 6284570 6372690 5507250 4746260 TRUE FALSE FALSE 4935471.658 6196773.158 9265565.115 2883895.883 6864601.434 4776801.613 4712104.115 4921767.602 5984622.864 3557765.603 1.387239129 1.741759815 2.604321405 0.810591873 1.929469841 1.3426409 1.324456032 1.383387258 1.682129609 1 21.76254003 -5.270573733 24.99681654 1.391582561 1.89417211 0.279484825 0.406954396 900.3400025 2463843.484 0.111423704 0.167938529 5.36E-06 5.270573733 0.502589548 ALSDHHIYLEGTLLK(ac)PNMVTPGHACTQK ddPTM_HeLa_A485_30min_R1 4 ALSDHHIYLEGTLLKPNMVTPGHACTQK 28 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ;;; ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK;ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK;ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK;ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK 168.11 4.24E-26 293365000 267224 388256 441332 175560 562604 337643 444694 528878 364246 366853 FALSE TRUE FALSE 326667.0569 433659.1618 604599.0722 185150.3983 506589.1703 355321.4654 349681.4941 399169.8413 437346.8311 275403.2985 1.186140684 1.574633144 2.195322552 0.672288238 1.839444818 1.290185947 1.269706993 1.449401091 1.588023213 1 18.07118631 -11.1875234 1.821223605 0.000139967 1.45548314 0.110676537 0.383974693 2945364.264 545073.2459 12115070.01 0.099930677 6.49E-12 11.1875234 1.455343173 ALSDHHIYLEGTLLK(ac)PNMVTPGHACTQK ddPTM_HeLa_A486_30min_R1 3 ALSDHHIYLEGTLLKPNMVTPGHACTQK 28 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ;; ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK;ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK;ALSDHHIYLEGTLLK(1)PNMVTPGHACTQK 141.48 1.73E-18 215463000 166224 189733.5 199921 7832.5 245101 148939.8 172763.7 173752 185196 83861.2 FALSE TRUE FALSE 154572.556 174698.3265 277335.7653 18234.45583 214358.1471 130565.1218 129536.395 134192.4626 201248.9384 62861.80968 2.458926283 2.779085225 4.411832346 0.290072079 3.409990075 2.077018184 2.06065329 2.134721594 3.201449965 1 15.93989618 -5.238326643 24.98394883 2.133503733 3.172861278 0.230516762 0.982919733 1309.227704 1415221.314 0.254668109 0.440746589 5.78E-06 5.238326643 1.039357546 ALSDHHIYLEGTLLKPNMVTPGHACTQK ddPTM_HeLa_A485_30min_R1 5 ALSDHHIYLEGTLLKPNMVTPGHACTQK 28 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;;; ;;;; 211.13 3.83E-42 737145000 569526 812011 735226 307213 1031090 813714 1021070 1237780 716034 694148 FALSE FALSE TRUE 696215.0939 906968.6229 1007216.693 323995.2683 928431.0592 856318.8068 802910.0531 934212.5142 859735.4559 521109.6784 1.336024109 1.7404563 1.932830524 0.62174103 1.781642325 1.643260224 1.540769796 1.792736832 1.649816711 1 18.99122752 ALSDHHIYLEGTLLKPNMVTPGHACTQK ddPTM_HeLa_A486_30min_R1 4 ALSDHHIYLEGTLLKPNMVTPGHACTQK 28 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 235.57 1.04E-59 213253100 170513 179486 184117 17507.7 251622 178358 195545 183783 206399 95141.6 FALSE FALSE TRUE 158560.9192 165262.8757 255412.0332 40758.81039 220061.2225 156354.0034 146617.5727 141939.6229 224289.8315 71317.52409 2.223309365 2.317282853 3.581336235 0.571511854 3.085654266 2.192364434 2.055842159 1.990248886 3.144946973 1 16.121969 -10.19947336 4.526520142 0.999683216 2.33181564 0.211530382 0.7819007 251322288.5 484.7586802 829956.9422 0.178106145 6.32E-11 10.19947336 1.332132424 ALSGGGSVAS(ph)PPPSPAMPK ddPTM_HeLa_A485_30min_R1 1 ALSGGGSVASPPPSPAMPK 19 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 ALSGGGSVAS(1)PPPSPAMPK 205.68 1.11E-25 209160000 178060 211740 192220 205780 233480 242200 291360 303000 191660 301620 TRUE FALSE FALSE 217668.8327 236501.1511 263330.1769 217021.2403 210233.9114 254881.2175 229108.5558 228688.7749 230124.404 226431.6849 0.961300238 1.044470217 1.162956399 0.958440248 0.928465075 1.125642896 1.01182198 1.009968084 1.016308314 1 17.78871633 ALSGGGSVAS(ph)PPPSPAMPK ddPTM_HeLa_A486_30min_R1 2 ALSGGGSVASPPPSPAMPK 19 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 ALSGGGSVAS(1)PPPSPAMPK;ALSGGGSVAS(0.999)PPPS(0.001)PAMPK ; 267.39 9.10E-59 92352000 431040 431730 285260 135022 443110 436050 451530 439220 348870 520340 TRUE FALSE FALSE 400826.3219 397518.1425 395720.3115 314338.0396 387531.012 382254.5844 338552.4182 339219.1941 379110.3325 390043.4772 1.027645238 1.019163672 1.014554363 0.805905131 0.9935585 0.980030706 0.867986361 0.869695852 0.971969421 1 18.57327542 -5.044179087 24.97210198 0.923044934 1.021768256 0.335548743 0.060146368 462.4143078 261377.7257 0.016168172 0.028006542 9.03E-06 5.044179087 0.098723322 ALSGPEPAKDNVEDRT(ph)PEHFALVPLTESQGPPHSGSGSR ddPTM_HeLa_A485_30min_R1 1 ALSGPEPAKDNVEDRTPEHFALVPLTESQGPPHSGSGSR 39 2 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 ALS(0.008)GPEPAKDNVEDRT(0.992)PEHFALVPLTESQGPPHSGSGSR 236.7 9.73E-52 365030000 215540 268580 236460 168120 392910 231010 311660 336830 209670 256390 TRUE FALSE FALSE 263486.1294 299988.0947 323936.3939 177303.9699 353790.5008 243105.3264 245071.295 254221.9144 251748.8458 192476.6915 1.368924867 1.558568429 1.682990244 0.921171122 1.838095294 1.263037745 1.273251805 1.320793247 1.307944582 1 17.55432422 -9.903560886 0.169641159 0.629187165 1.575497275 0.245091234 0.232380285 31.24561248 1.187850006 6.419660626 1.110574313 1.25E-10 9.903560886 0.946310109 ALSGRAS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_A485_30min_R1 1 ALSGRASPVPAPSSGLHAAVR 21 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 ALS(0.045)GRAS(0.941)PVPAPS(0.012)S(0.002)GLHAAVR 121.5 5.48E-06 519880000 104990 262150 226460 56107 284040 215250 250560 302600 192230 145750 TRUE FALSE FALSE 128344.6633 292806.1621 310236.9778 59171.98334 255759.9803 226520.1572 197025.8091 228386.8755 230808.7978 109417.2073 1.172984272 2.676052234 2.835358216 0.540792301 2.337474941 2.070242539 1.80068395 2.087303095 2.109437842 1 16.73948011 -10.17501579 5.324514149 0.999973458 1.977614572 0.166262775 0.642979028 0.000295354 4.58E-05 0.608590422 0.147598918 6.68E-11 10.17501579 0.977641114 ALSGRAS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_A486_30min_R1 2 ALSGRASPVPAPSSGLHAAVR 21 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 ALS(0.003)GRAS(0.997)PVPAPSSGLHAAVR;ALS(0.229)GRAS(0.766)PVPAPS(0.002)S(0.003)GLHAAVR ; 126.75 7.43E-07 903020000 272070 219622 330610 20069.2 547430 183350 256922 251920 243300 161384 TRUE FALSE FALSE 252999.298 202218.3529 458631.046 46722.11184 478766.2248 160730.1412 192637.3982 194563.3154 264389.4399 120972.396 2.091380401 1.671607405 3.79120412 0.386221265 3.957648528 1.328651383 1.592407893 1.608328196 2.185535285 1 16.88431836 ALSGT(ph)SPDDVQPGPSVGPPSK ddPTM_HeLa_A485_30min_R1 1 ALSGTSPDDVQPGPSVGPPSK 21 0 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.01)GT(0.575)S(0.415)PDDVQPGPSVGPPSK 180.88 3.16E-21 0 51808 48656 41182 67452 69892 47575 55051 56802 44884 85743 TRUE FALSE FALSE 63332.51086 54345.89595 56416.93553 71136.73196 62933.30707 50065.95344 43288.90412 42871.22044 53891.8071 64368.84808 0.983900019 0.844288776 0.876463339 1.105142225 0.977698203 0.777797878 0.672513264 0.666024354 0.837234294 1 15.97407503 -6.28681262 7.511590697 0.761967481 0.954958537 0.348872075 0.110486893 0.223985345 54.07258357 0.039131961 0.035151815 5.17E-07 6.28681262 0.192991057 ALSGTS(ph)PDDVQPGPSVGPPSK ddPTM_HeLa_A485_30min_R1 1 ALSGTSPDDVQPGPSVGPPSK 21 0 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.003)GT(0.093)S(0.904)PDDVQPGPSVGPPSK 269.99 5.71E-60 83975000 122880 100310 103680 137570 144170 126140 138630 127010 119240 209990 TRUE FALSE FALSE 150214.2321 112040.3819 142035.5465 145085.1008 129815.9286 132744.4954 109010.568 95860.59836 143170.3743 157643.3576 0.952873844 0.710720601 0.900992904 0.920337545 0.823478582 0.842055748 0.691501181 0.608085236 0.908191607 1 17.26630486 -6.553770724 23.14669953 0.768926701 0.856139818 0.023719776 0.119314038 208.487373 156211.7259 0.044126116 0.034180599 2.79E-07 6.553770724 0.087213117 ALSGTS(ph)PDDVQPGPSVGPPSK ddPTM_HeLa_A486_30min_R1 1 ALSGTSPDDVQPGPSVGPPSK 21 0 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALSGT(0.01)S(0.99)PDDVQPGPSVGPPSK 334.07 2.45E-114 176740000 139320 178290 102610 53487 162900 168150 191920 178440 127930 183340 TRUE FALSE FALSE 129554.3874 164161.6511 142343.34 124520.4391 142467.563 147405.3626 143899.5861 137813.1073 139019.0754 137430.4707 0.942690415 1.194506941 1.035748035 0.90606136 1.036651933 1.072581371 1.047071915 1.00278422 1.011559334 1 17.06834238 -2.072187286 0.085703175 0.974966347 1.150586213 0.009996477 0.07308634 690.9499082 5.349597256 1.868805918 14.49744026 0.008468621 2.072187286 0.175619866 ALSGTS(ph)PDDVQPGPSVGPPSKDKDK ddPTM_HeLa_A485_30min_R1 2 ALSGTSPDDVQPGPSVGPPSKDKDK 25 2 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.003)GT(0.132)S(0.865)PDDVQPGPSVGPPSKDKDK;ALS(0.024)GT(0.119)S(0.857)PDDVQPGPSVGPPSKDKDK ; 144.7 2.23E-09 408360000 278273 210783 100941 314080 297360 359690 648220 688850 218014 509230 TRUE FALSE FALSE 340173.8688 235432.2383 138283.2764 331237.3951 267753.7943 378522.8122 509722.5015 519908.4574 261767.4101 382288.3327 0.889835864 0.615849918 0.361725077 0.866459598 0.700397505 0.990150051 1.333345692 1.359990387 0.684738161 1 18.54430164 -6.3319618 3.043262645 1.128482809 0.668675077 0.429564669 0.222964339 0.238963154 4.351814542 0.085016845 0.07539753 4.66E-07 6.3319618 -0.459807732 ALSGTS(ph)PDDVQPGPSVGPPSKDKDK ddPTM_HeLa_A486_30min_R1 1 ALSGTSPDDVQPGPSVGPPSKDKDK 25 2 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.003)GT(0.136)S(0.861)PDDVQPGPSVGPPSKDKDK 140.71 1.53E-07 101340000 170640 123840 46086 104450 142030 161330 283330 248460 82948 312430 TRUE FALSE FALSE 158679.0172 114026.4674 63931.73343 243164.8786 124215.273 141426.7449 212437.8372 191891.0818 90137.99943 234195.4944 0.677549402 0.486885829 0.272984472 1.038298705 0.530391387 0.603883287 0.907096175 0.819362825 0.384883576 1 17.8373538 -5.248277439 24.99793405 0.738020076 0.479914523 0.254518094 0.214881391 1172.740228 2227333.717 0.057249536 0.098400668 5.65E-06 5.248277439 -0.258105553 ALSKAS(ph)PNTR ddPTM_HeLa_A485_30min_R1 2 ALSKASPNTR 10 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 ALS(0.111)KAS(0.887)PNT(0.002)R;ALS(0.012)KAS(0.951)PNT(0.037)R ; 86.944 0.0018092 1421180000 522860 972470 732960 467090 1449860 1280580 1507260 2457500 833230 773300 TRUE FALSE FALSE 639168.4032 1086191.907 1004112.405 492605.944 1305506.848 1347629.189 1185221.588 1854794.272 1000451.618 580530.5415 1.101007367 1.871033183 1.729646131 0.848544407 2.248816822 2.321375177 2.041617974 3.194998607 1.723340198 1 19.14701244 -5.793862499 24.96474041 2.207422381 1.446526436 0.238520423 0.587114153 240.012988 184800.8813 0.174511905 0.197892586 1.61E-06 5.793862499 -0.760895945 ALSKAS(ph)PNTR ddPTM_HeLa_A486_30min_R1 2 ALSKASPNTR 10 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 ALS(0.092)KAS(0.908)PNTR;ALS(0.029)KAS(0.97)PNT(0.002)R ; 123.28 6.19E-05 955910000 888210 692990 748560 418160 1560470 785600 1113940 1411680 542530 1026670 TRUE FALSE FALSE 825951.0657 638074.9486 1038422.479 973497.6126 1364741.302 688680.6594 835220.4299 1090271.281 589556.9372 769585.1495 1.073241949 0.829115464 1.349327595 1.264964135 1.773346722 0.894872594 1.085286574 1.416699999 0.766071094 1 19.55372143 -7.771444708 24.97392628 0.883035496 1.208582614 0.199784292 0.262402224 384.9261593 960765.8726 0.24872234 0.067300243 1.69E-08 7.771444708 0.325547118 ALSQTVPSSGTNGVSLPADCTGAVPAAS(ph)PDTAAWR ddPTM_HeLa_A485_30min_R1 1 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWR 35 0 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EN31 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 ALSQTVPSSGTNGVSLPADCTGAVPAAS(0.949)PDT(0.051)AAWR 101.44 7.85E-05 160050000 92398 114530 151850 92421 143660 106640 154070 140460 124950 125140 TRUE FALSE FALSE 112951.6163 127923.2872 208025.634 97469.72521 129356.706 112223.5055 121151.6859 106011.9648 150026.3189 93944.90103 1.202317689 1.361684198 2.214336614 1.037520122 1.376942277 1.194567286 1.289603635 1.12844831 1.596960742 1 16.51952724 ALSQTVPSSGTNGVSLPADCTGAVPAAS(ph)PDTAAWR ddPTM_HeLa_A486_30min_R1 2 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWR 35 0 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EN31 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 ALSQTVPSSGTNGVSLPADCT(0.001)GAVPAAS(0.734)PDT(0.265)AAWR;ALSQTVPSSGTNGVSLPADCTGAVPAAS(0.951)PDT(0.049)AAWR ; 145.34 1.66E-09 295160000 175452 216690 200880 71179 239760 180676 173937 197132 166439 190497 TRUE FALSE FALSE 163153.7208 199518.6952 278666.1158 165708.3092 209687.0651 158386.0321 130416.1229 152249.347 180866.0665 142795.3113 1.142570574 1.39723562 1.951507464 1.160460436 1.46844503 1.109182302 0.913308159 1.066206906 1.266610682 1 17.12358908 -6.306751417 4.93560235 1.060930524 1.43800077 0.383802253 0.223514022 0.225405623 13.01082827 0.081444893 0.072831043 4.93E-07 6.306751417 0.377070246 ALSS(ph)DSILSPAPDAR ddPTM_HeLa_A486_30min_R1 4 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 ALS(0.25)S(0.75)DSILSPAPDAR;ALS(0.291)S(0.709)DSILSPAPDAR;ALS(0.232)S(0.768)DSILSPAPDAR;ALS(0.306)S(0.693)DS(0.001)ILSPAPDAR ;;; 472.29 5.80E-216 21735400000 1971080 2306040 1845340 683417 2407640 2191900 2459800 2552660 2269570 2304710 TRUE FALSE FALSE 1832917.471 2123300.992 2559905.068 1591029.314 2105651.341 1921485.664 1844332.023 1971475.042 2466298.155 1727595.615 1.060964415 1.229049769 1.481773307 0.920950077 1.21883346 1.112231154 1.067571605 1.141166964 1.42758996 1 20.72033413 -5.265704998 24.96077845 1.133534714 1.254441216 0.123292967 0.158552593 832.155617 4869466.621 0.043968716 0.067971664 5.42E-06 5.265704998 0.120906502 ALSS(ph)LHGDDQDS(ph)EDEVLTIPEVK ddPTM_HeLa_A485_30min_R1 1 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 2 0 ALS(0.15)S(0.85)LHGDDQDS(1)EDEVLTIPEVK 115.54 0.00011071 46212000 50045 54415 41174 73143 53952 58497 95286 93460 54092 121640 TRUE FALSE FALSE 61177.3376 60778.3609 56405.97599 77138.61688 48580.34944 61559.81247 74927.36768 70538.78846 64947.76824 91317.38662 0.669941835 0.665572715 0.617691527 0.844730886 0.531994522 0.674130248 0.8205159 0.772457372 0.711231132 1 16.47860195 -12.53927892 0.182587273 1.704908983 0.629450414 0.560356125 0.08363532 54.96767435 0.861014741 14.68416149 0.268053112 2.89E-13 12.53927892 -1.075458569 ALSS(ph)LHGDDQDS(ph)EDEVLTIPEVK ddPTM_HeLa_A486_30min_R1 2 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 2 0 ALS(0.171)S(0.853)LHGDDQDS(0.976)EDEVLTIPEVK;ALS(0.148)S(0.852)LHGDDQDS(0.998)EDEVLT(0.002)IPEVK ; 91.086 0.0018858 169250000 190987 180581 128622 54278 184038 199577 220560 210270 173094 268930 TRUE FALSE FALSE 177599.7976 166271.1039 178427.883 126361.9271 160954.238 174955.2189 165373.5552 162396.1112 188097.9273 201588.1776 0.881003041 0.824805829 0.885110849 0.626832032 0.798430939 0.867884322 0.820353441 0.805583508 0.933080152 1 17.62105151 -7.903526664 3.174087999 0.998866119 0.811339688 0.448796463 0.069464702 0.210231767 4.145702788 0.068675583 0.01844638 1.25E-08 7.903526664 -0.187526432 ALSSGGSITS(ph)PPLS(ph)PALPK ddPTM_HeLa_A485_30min_R1 3 ALSSGGSITSPPLSPALPK 19 0 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 0 ALSSGGSIT(0.021)S(0.979)PPLS(1)PALPK;ALSSGGSIT(0.002)S(0.998)PPLS(1)PALPK;ALSSGGSITS(1)PPLS(1)PALPK ;; 277.03 3.68E-69 1378060000 1415820 1380070 1105920 1529270 1747470 1520380 1878580 1871510 1008460 1932660 TRUE FALSE FALSE 1730764.274 1541457.181 1515045.829 1612810.148 1573485.751 1599984.746 1477206.036 1412519.238 1210848.672 1450883.43 1.192903743 1.062426622 1.044222987 1.111605601 1.084501841 1.102765882 1.018142468 0.973558047 0.834559584 1 20.46850018 -7.137679913 1.994242072 0.918698221 1.095544495 0.650339612 0.054061341 0.207268289 1.57468639 0.034142676 0.01564355 7.28E-08 7.137679913 0.176846274 ALSSGGSITS(ph)PPLS(ph)PALPK ddPTM_HeLa_A486_30min_R1 2 ALSSGGSITSPPLSPALPK 19 0 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 0 ALSSGGSIT(0.02)S(0.98)PPLS(1)PALPK;ALSSGGSIT(0.018)S(0.982)PPLS(1)PALPK ; 209.7 1.36E-25 1813140000 2678200 2558900 1544610 1003210 2647500 2452500 2787900 2962900 2108930 3499700 TRUE FALSE FALSE 2490472.01 2356123.445 2142724.358 2335523.579 2315425.863 2149935.485 2090337.933 2288312.35 2291733.75 2623352.341 0.949347128 0.898134577 0.816788628 0.89028208 0.882620999 0.819537449 0.79681936 0.872285554 0.873589763 1 21.32298016 -8.412010295 2.436188982 0.99999048 0.862959259 0.466650289 0.042784743 3.98141286 22.36008753 0.043651058 0.011820969 3.87E-09 8.412010295 -0.137031221 ALSSGGSITS(ph)PPLSPALPK ddPTM_HeLa_A485_30min_R1 4 ALSSGGSITSPPLSPALPK 19 0 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 ALSSGGSIT(0.002)S(0.998)PPLSPALPK;ALSSGGSITS(1)PPLSPALPK;ALSSGGSIT(0.01)S(0.986)PPLS(0.004)PALPK;ALSSGGSIT(0.163)S(0.837)PPLSPALPK ;;; 333.03 6.08E-102 3917650000 1669940 1839180 1570863 2037460 2223530 2008950 2615460 2812790 1585207 2569500 TRUE FALSE FALSE 2041412.392 2054256.102 2151990.593 2148761.281 2002147.546 2114135.516 2056645.605 2122948.842 1903343.505 1928970.938 1.058290901 1.064949223 1.115615871 1.113941759 1.037935568 1.095991377 1.066187968 1.100560304 0.986714453 1 20.87939998 -7.766214112 24.99921332 0.993357171 1.081834692 0.681907812 0.024130337 71.09368647 372205.9716 0.021001827 0.006116779 1.71E-08 7.766214112 0.088477521 ALSSGGSITS(ph)PPLSPALPK ddPTM_HeLa_A486_30min_R1 4 ALSSGGSITSPPLSPALPK 19 0 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 ALSSGGSIT(0.184)S(0.816)PPLSPALPK;ALSSGGSIT(0.002)S(0.998)PPLSPALPK;ALSSGGSIT(0.002)S(0.998)PPLSPALPK;ALSSGGSIT(0.003)S(0.997)PPLSPALPK ;;; 269.91 3.82E-59 4234540000 3041860 3382530 2367030 1239044 3410070 3435340 4050150 4137310 2920450 4065540 TRUE FALSE FALSE 2828641.322 3114486.004 3283607.407 2884557.05 2982347.223 3011522.679 3036759.632 3195334.83 3173596.957 3047502.322 0.928183484 1.021979863 1.077474949 0.946531535 0.978620164 0.988193727 0.99647492 1.0485094 1.041376387 1 21.53919589 -7.20011913 7.427513058 1.033630771 0.993162928 0.162710535 0.039991623 0.505343458 54.39088445 0.01958032 0.011216248 6.31E-08 7.20011913 -0.040467843 ALSSLHGDDQDS(ph)EDEVLTIPEVK ddPTM_HeLa_A485_30min_R1 6 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 0 ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSS(0.001)LHGDDQDS(0.999)EDEVLTIPEVK ;;;;; 232.2 5.00E-39 16199850000 3190410 3334960 2490990 2884740 3366540 3301930 5029700 5020360 3009850 6268110 TRUE FALSE FALSE 3900105.698 3724954.562 3412510.86 3042326.042 3031355.457 3474813.949 3955063.506 3789108.838 3613899.287 4705585.533 0.828824738 0.791602774 0.725204299 0.646535064 0.644203667 0.738444541 0.840504009 0.805236418 0.76800204 1 22.16594282 -8.662783707 0.573626722 1.00992776 0.731941686 0.592969395 0.062617266 1.847059262 0.949498238 0.11978747 0.031787668 2.17E-09 8.662783707 -0.277986075 ALSSLHGDDQDS(ph)EDEVLTIPEVK ddPTM_HeLa_A486_30min_R1 9 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 0 ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALS(0.001)S(0.006)LHGDDQDS(0.993)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALS(0.004)S(0.004)LHGDDQDS(0.991)EDEVLTIPEVK;ALS(0.063)S(0.063)LHGDDQDS(0.874)EDEVLTIPEVK;ALSS(0.002)LHGDDQDS(0.997)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK ;;;;;;;; 216.81 4.91E-38 17713190000 4604532 4483193 3117742 354777.1 5187418 4605295 4829660 4412318 4676445 4070074 TRUE FALSE FALSE 4281778.085 4127928.459 4325015.198 825939.0182 4536763.664 4037140.526 3621227.985 3407729.512 5081803.018 3050900.979 1.403447085 1.353019481 1.417619001 0.270719707 1.487024225 1.323261736 1.186937239 1.116958412 1.665672879 1 21.54080393 ALSSSK(ac)QSSSSR ddPTM_HeLa_A485_30min_R1 1 ALSSSKQSSSSR 12 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ALSSSK(1)QSSSSR 150.06 0.00060014 10676000 990.69 1186.4 1601.3 822.97 1147.4 1185.9 1985.3 2458 4541.5 4117.3 FALSE TRUE FALSE 1211.065573 1325.13916 2193.687506 867.9267672 1033.160827 1247.99189 1561.124437 1855.171646 5452.937393 3090.932883 0.391812316 0.428718193 0.709716965 0.280797675 0.334255342 0.403758974 0.505065783 0.600197971 1.764172047 1 11.59382661 -7.644547938 6.064819946 1.369960671 0.44395388 0.769700546 0.20374555 0.086408162 4.145047607 0.135577332 0.049261612 2.27E-08 7.644547938 -0.926006791 ALSSSK(ac)QSSSSR ddPTM_HeLa_A486_30min_R1 2 ALSSSKQSSSSR 12 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ; ALSSSK(1)QSSSSR;ALSSSK(1)QSSSSR 307.97 1.76E-75 53002000 12218 18231.6 20238.4 5291.2 21659 18393.3 18200 18108 18338.4 17582.9 FALSE TRUE FALSE 11361.58129 16786.86162 28075.25048 12318.181 18942.32626 16124.12166 13646.1675 13985.20369 19927.98728 13180.02739 0.862030173 1.273659084 2.130135973 0.934609666 1.437199309 1.223375428 1.035367158 1.061090639 1.511983752 1 13.68606575 -6.492363323 8.34612842 1.153189014 1.345867732 0.05283924 0.347337866 0.938135376 236.5754554 0.125892955 0.10845949 3.22E-07 6.492363323 0.192678718 ALSTGEK(ac)GFGYK ddPTM_HeLa_A486_30min_R1 1 ALSTGEKGFGYK 12 1 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 ALSTGEK(1)GFGYK 149.49 0.00065067 38495000 35417 37599 27095 11491 42359 40800 48702 49427 39942 43154 FALSE TRUE FALSE 32934.45119 34619.51831 37586.90963 26751.62872 37045.93924 35766.51082 36516.24448 38173.55108 43404.20472 32347.95751 1.018130779 1.070222696 1.161956195 0.826995915 1.145232716 1.105680654 1.12885781 1.180091543 1.3417912 1 14.981387 -6.534746336 1.459378655 1.185697325 1.037907689 0.201276608 0.114347623 0.615496144 2.661499132 0.058426671 0.042283013 2.92E-07 6.534746336 -0.147789636 ALSTGLDYS(ph)PPSAPR ddPTM_HeLa_A485_30min_R1 1 ALSTGLDYSPPSAPR 15 0 P54253 P54253 ATXN1 Ataxin-1 1 0 ALSTGLDYS(0.993)PPS(0.007)APR 89.358 0.0012455 260210000 61311 96614 90939 58550 99905 98468 109180 103580 76362 81330 TRUE FALSE FALSE 74949.42043 107912.1669 124581.1204 61748.43824 89958.10741 103623.6322 85852.80108 78176.84259 91687.15297 61055.92777 1.227553543 1.767431449 2.040442672 1.011342232 1.473372213 1.697192001 1.406133757 1.280413638 1.501691258 1 15.89784375 -11.51686483 0.181930019 0.214306673 1.638289347 0.232220507 0.275407218 69.08112766 1.525428852 22.62268093 0.96518045 3.04E-12 11.51686483 1.423982674 ALSVGNIDDALQCYSEAIK(ac)LDPHNHVLYSNR ddPTM_HeLa_A485_30min_R1 1 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNR 31 1 P31948;P31948-2;P31948-3;F5GXD8;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 1 ALSVGNIDDALQCYSEAIK(1)LDPHNHVLYSNR 81.697 8.84E-05 81043000 3840.3 4424.2 7374.3 3583.2 11401 4989 6372.5 6718.3 5675.4 7223.2 FALSE TRUE FALSE 4694.561486 4941.571705 10102.36044 3778.941143 10265.87641 5250.216326 5010.963316 5070.626391 6814.400722 5422.589173 0.865741685 0.911293765 1.863014165 0.696888704 1.893168758 0.968212077 0.924090532 0.935093224 1.256669186 1 12.40476616 ALSYASLDKEDLLS(ph)PINQNTLQR ddPTM_HeLa_A485_30min_R1 2 ALSYASLDKEDLLSPINQNTLQR 23 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 ALSYASLDKEDLLS(1)PINQNTLQR;ALSYASLDKEDLLS(1)PINQNTLQR ; 195.21 5.34E-22 449020000 321170 310410 262050 340150 443800 383930 468250 493230 293940 491440 TRUE FALSE FALSE 392613.1585 346709.7493 358993.1998 358731.5332 399613.7137 404031.9811 368204.5622 372264.5691 352931.0618 368933.0523 1.064185375 0.939763318 0.973057842 0.97234859 1.083160512 1.095136309 0.998025414 1.009030139 0.956626303 1 18.49299952 -3.916121343 19.00583004 1.0063574 3.335931289 0.124042676 0.048032081 588.2741881 136150.5121 0.01271407 1252.516037 0.000121305 3.916121343 2.329573888 ALT(ph)TPTHYK ddPTM_HeLa_A485_30min_R1 5 ALTTPTHYK 9 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ALT(0.5)T(0.5)PTHYK;ALT(0.58)T(0.42)PTHYK;ALT(0.586)T(0.41)PT(0.004)HYK;ALT(0.5)T(0.5)PTHYK;ALT(0.594)T(0.406)PTHYK ;;;; 90.827 0.0043503 2355980000 2415760 2684720 2391480 2495350 3323190 2757720 3242410 3565470 2457620 3271190 TRUE FALSE FALSE 2953137.478 2998674.65 3276187.97 2631664.652 2992321.535 2902109.955 2549642.615 2691032.892 2950841.791 2455742.535 1.202543604 1.221086742 1.334092611 1.071637036 1.218499697 1.181764747 1.03823694 1.095812307 1.20160878 1 21.22772788 -1.137816404 0.047398943 0.652873825 2.052866185 0.417794785 0.073864 511.9833943 1.883690248 13.84208801 53.99605637 0.072808753 1.137816404 1.39999236 ALT(ph)TPTHYK ddPTM_HeLa_A486_30min_R1 3 ALTTPTHYK 9 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ALT(0.594)T(0.396)PT(0.01)HYK;ALT(0.561)T(0.439)PTHYK;ALT(0.499)T(0.499)PT(0.002)HYK ;; 99.568 0.0025378 1560390000 2525010 2645330 1849290 904380 2697380 2422190 2745370 2849910 1986590 2719920 TRUE FALSE FALSE 2348019.838 2435704.417 2565384.614 2105442.345 2359049.448 2123364.825 2058449.388 2201047.706 2158789.221 2038834.328 1.151648177 1.194655389 1.258260457 1.032669656 1.15705794 1.041460209 1.009620723 1.079561824 1.058835037 1 20.95931312 -5.608060074 1.22502998 1.044632307 1.198193179 0.57300328 0.053941795 0.342146443 1.064125177 0.02066747 0.035401048 2.47E-06 5.608060074 0.153560873 ALTGGIAHLFK(ac)QNK ddPTM_HeLa_A485_30min_R1 2 ALTGGIAHLFKQNK 14 1 E9PEX6;P09622-2;P09622-3;P09622 E9PEX6 DLD "Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial" 0 1 ; ALTGGIAHLFK(1)QNK;ALTGGIAHLFK(1)QNK 194.12 2.72E-15 75863000 171761 209560 161440 174324 189335 241250 251210 279170 166516 290100 FALSE TRUE FALSE 209968.6419 234066.2191 221163.3741 183846.8787 170484.1426 253881.477 197536.9313 210703.1198 199934.2338 217783.4089 0.964116794 1.074766073 1.015519847 0.844173023 0.782815107 1.165752149 0.907033884 0.967489309 0.918041621 1 17.73253453 -5.035191955 24.53642795 0.939949933 1.025866867 0.114140522 0.098480091 965.5282458 673182.0482 0.027162975 0.047077602 9.22E-06 5.035191955 0.085916934 ALTGGIAHLFK(ac)QNK ddPTM_HeLa_A486_30min_R1 2 ALTGGIAHLFKQNK 14 1 E9PEX6;P09622-2;P09622-3;P09622 E9PEX6 DLD "Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial" 0 1 ; ALTGGIAHLFK(1)QNK;ALTGGIAHLFK(1)QNK 152.99 1.74E-06 82619000 84848 110433 85591 25285 123242 100681 110660 112488 112215 97359 FALSE TRUE FALSE 78900.59336 101681.8869 118734.1274 58864.75783 107783.8392 88260.00187 82971.69756 86876.938 121941.8866 72979.6727 1.081131094 1.39329053 1.62694793 0.806591146 1.4769022 1.20937788 1.136915178 1.190426523 1.670902075 1 16.15520706 ALTGHLEEVVLALLK ddPTM_HeLa_A486_30min_R1 1 ALTGHLEEVVLALLK 15 0 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 0 0 107.45 0.00055993 33787000 23954 26791 18749 12039 28180 23538 29990 27476 22030 28907 FALSE FALSE TRUE 22274.9483 24667.98359 26009.11492 28027.40042 24645.40163 20634.12088 22486.1848 21220.3146 23939.57814 21668.49905 1.027987599 1.138426041 1.200319176 1.293462937 1.137383885 0.952263506 1.037736151 0.979316313 1.104810171 1 14.4033116 -6.120130474 5.821774932 1.015744511 1.171273252 0.505063606 0.071812651 0.200558496 8.779192562 0.024931127 0.025023155 7.58E-07 6.120130474 0.155528741 ALTHNGT(ph)PR ddPTM_HeLa_A485_30min_R1 7 ALTHNGTPR 9 0 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 0 ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR ;;;;;; 119.43 0.0014069 3037453000 1966710 2617420 2480900 1660566 2558330 1989410 2275510 2435970 1845610 1926790 TRUE FALSE FALSE 2404197.854 2923504.5 3398688.149 1751278.516 2303613.682 2093572.431 1789328.699 1838544.538 2216006.998 1446476.713 1.66210616 2.021121028 2.349632122 1.210720159 1.5925688 1.447359928 1.237025583 1.271050216 1.532003231 1 20.46411167 -5.272147613 24.99889684 1.350841162 2.011969903 0.662044621 0.223409074 416.4676091 972263.3383 0.06231647 0.093466457 5.34E-06 5.272147613 0.661128741 ALTHNGT(ph)PR ddPTM_HeLa_A486_30min_R1 8 ALTHNGTPR 9 0 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 0 ALTHNGT(1)PR;ALTHNGT(1)PR;ALT(0.002)HNGT(0.998)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALTHNGT(1)PR;ALT(0.002)HNGT(0.998)PR;ALTHNGT(1)PR ;;;;;;; 114.93 0.0012927 7461280000 5654490 5675460 4781192 1601204 5631500 4246213 4657923 4366026 3832668 4573104 TRUE FALSE FALSE 5258139.451 5225715.88 6632597.587 3727683.832 4925144.758 3722358.412 3492461.399 3371977.189 4164886.748 3427968.992 1.533893528 1.524434991 1.934847603 1.087432191 1.436753007 1.085878671 1.018813591 0.983666187 1.214972118 1 21.70892263 -5.70400093 1.228180881 1.059008261 1.636847595 0.615375361 0.185120755 0.30021438 0.950360381 0.072439135 0.111562947 1.98E-06 5.70400093 0.577839335 ALTLLDYLLK ddPTM_HeLa_A486_30min_R1 1 ALTLLDYLLK 10 0 D6RBR6;D6RFG3;D6REL6;I6L9I8;Q9H201-2;Q9H201 D6RBR6 EPN3 Epsin-3 0 0 104.17 0.0061423 0 1740 2816.2 2057.4 839.32 3043.4 3153 3014 2784.6 1646.4 2928.3 FALSE FALSE TRUE 1618.034985 2593.034056 2854.080379 1953.979377 2661.668393 2764.014917 2259.865321 2150.607367 1789.111278 2195.03462 0.737134153 1.181318068 1.300243902 0.890181576 1.212586065 1.259212448 1.029535161 0.979760113 0.815072009 1 11.10002798 -7.254873586 2.834508598 0.911344309 1.106540293 0.158214604 0.168088182 0.469890938 7.498744633 0.103022592 0.047036311 5.56E-08 7.254873586 0.195195984 ALTQPS(ph)PVSTPSSVQFFLQEDDSADR ddPTM_HeLa_A486_30min_R1 1 ALTQPSPVSTPSSVQFFLQEDDSADR 26 0 P04920-2;P04920-3;P04920;C9J9M9 P04920-2 SLC4A2 Anion exchange protein 2 1 0 ALT(0.011)QPS(0.959)PVS(0.024)T(0.006)PSSVQFFLQEDDSADR 85.376 1.25E-05 0 28553 29884 21176 14139 32735 29776 29967 28709 27232 33445 TRUE FALSE FALSE 26551.58215 27515.883 29375.91431 32916.30655 28629.07106 26102.53986 22468.93964 22172.58741 29592.49169 25070.15431 1.059091293 1.097555391 1.171748444 1.312967848 1.14195831 1.041179864 0.896242574 0.884421657 1.180387297 1 14.61368326 -6.353812549 3.488212992 0.980077298 1.163649683 0.394026595 0.097618548 0.251915904 5.801394174 0.037856118 0.033218504 4.43E-07 6.353812549 0.183572386 ALTQPS(ph)PVSTPSSVQFFLQEDDSADRK ddPTM_HeLa_A486_30min_R1 1 ALTQPSPVSTPSSVQFFLQEDDSADRK 27 1 P04920-2;P04920-3;P04920;C9J9M9 P04920-2 SLC4A2 Anion exchange protein 2 1 0 ALT(0.007)QPS(0.642)PVS(0.167)T(0.167)PS(0.009)S(0.009)VQFFLQEDDS(0.001)ADRK 53.615 0.019767 29623000 21361 19316 12944 9399.3 20653 27334 26441 21900 20419 38822 TRUE FALSE FALSE 19863.70421 17785.32981 17956.26345 21882.04541 18062.50816 23961.80899 19825.18214 16913.84807 22188.93536 29100.71851 0.682584665 0.611164628 0.617038492 0.751941757 0.620689422 0.823409531 0.681260916 0.581217542 0.762487543 1 14.82876715 -14 0.297630942 3.630609648 0.661828898 0.641942148 0.072283581 168.2860786 1.567543872 275.7584053 0.074634337 1.00E-14 14 -2.96878075 ALTQTGGPHVK ddPTM_HeLa_A485_30min_R1 1 ALTQTGGPHVK 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 181.31 7.27E-09 0 65958 85969 75963 67366 96650 89746 102780 131460 97640 125300 FALSE FALSE TRUE 80630.12955 96022.32672 104064.8748 71046.034 87027.18664 94444.96179 80820.21336 99219.22888 117235.4524 94065.01598 0.857174463 1.020808063 1.106307948 0.755286471 0.925181224 1.004039183 0.859195233 1.054794153 1.246323632 1 16.52137064 -7.499098404 7.828543847 1.132551923 0.939394149 0.346395687 0.107927097 0.212684601 60.37558155 0.062129362 0.027890462 3.17E-08 7.499098404 -0.193157774 ALTT(ph)PTHYK ddPTM_HeLa_A486_30min_R1 1 ALTTPTHYK 9 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ALT(0.166)T(0.833)PT(0.001)HYK 96.171 0.0032421 383750000 811570 794870 559550 265260 852540 750480 858230 867610 646890 895830 TRUE FALSE FALSE 754683.134 731881.6063 776222.7453 617538.6855 745606.4836 657893.4079 643491.7766 670074.1428 702962.9461 671508.3371 1.123862642 1.089906954 1.155939104 0.919629216 1.110345832 0.979724855 0.958278164 0.99786422 1.046841725 1 19.35704579 -5.246222248 24.93827015 1.003511043 1.11990331 0.550895616 0.050197048 612.2799907 1003420.649 0.013256006 0.022840157 5.67E-06 5.246222248 0.116392267 ALTT(ph)PTHYKLT(ph)PR ddPTM_HeLa_A485_30min_R1 2 ALTTPTHYKLTPR 13 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 0 ALT(0.231)T(0.768)PT(0.002)HYKLT(0.999)PR;ALT(0.119)T(0.881)PT(0.003)HY(0.216)KLT(0.782)PR ; 113.29 0.00027005 933950000 1317980 1157230 1020990 1515020 1598140 1277800 1568970 1384670 1093860 1866260 TRUE FALSE FALSE 1611160.104 1292557.982 1398696.688 1597781.706 1439023.57 1344703.632 1233746.742 1045077.511 1313387.669 1401035.728 1.149977886 0.922573176 0.998330492 1.140428952 1.027114114 0.959792534 0.880596203 0.745932092 0.937440525 1 20.41806232 -6.523278671 2.556301285 0.869826304 1.04291775 0.415544819 0.086367515 0.265367805 3.493059887 0.035890962 0.028120354 3.00E-07 6.523278671 0.173091445 ALTT(ph)PTHYKLT(ph)PR ddPTM_HeLa_A486_30min_R1 3 ALTTPTHYKLTPR 13 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 0 ALT(0.022)T(0.978)PT(0.012)HY(0.003)KLT(0.985)PR;ALT(0.177)T(0.821)PT(0.179)HYKLT(0.822)PR;ALT(0.46)T(0.537)PT(0.032)HY(0.002)KLT(0.97)PR ;; 133.86 1.70E-05 1094960000 2041190 2170730 1362690 753630 1999500 2144110 2349680 2258800 1650830 2413420 TRUE FALSE FALSE 1898113.122 1998713.449 1890360.062 1754488.726 1748704.065 1879591.508 1761765.212 1744520.549 1793925.274 1809083.923 1.04921231 1.104820746 1.044926682 0.969821634 0.96662407 1.038974192 0.973843827 0.964311565 0.991620815 1 20.78682791 -5.084100948 4.134650206 0.986115819 1.07707033 0.702646673 0.024334424 0.115875867 3.604162365 0.006727863 0.012602178 8.24E-06 5.084100948 0.090954511 ALTT(ph)PTHYKLT(ph)PRPATR ddPTM_HeLa_A485_30min_R1 1 ALTTPTHYKLTPRPATR 17 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 0 ALT(0.455)T(0.531)PT(0.09)HY(0.022)KLT(0.902)PRPATR 76.889 0.0082014 252170000 114120 191180 146840 131330 374480 290530 398870 624360 171880 221390 TRUE FALSE FALSE 139505.6003 213536.838 201162.2265 138504.2254 337195.4563 305741.7016 313648.166 471234.731 206374.7394 166201.5474 0.839376062 1.284806558 1.210351105 0.833350998 2.028834639 1.839583965 1.887155511 2.835320961 1.241713706 1 17.34257429 -5.76615349 24.99976348 1.902994423 1.071343663 0.366096579 0.481390796 114.0681628 604923.2614 0.141389558 0.165580623 1.71E-06 5.76615349 -0.83165076 ALTVPELTQQVFDAK ddPTM_HeLa_A485_30min_R1 3 ALTVPELTQQVFDAK 15 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ;; ;; 210.41 1.93E-16 30262000 89729.6 87798.1 73083.5 123231.5 118723.4 106524.8 148333.3 149148.7 80285.7 160826.8 FALSE FALSE TRUE 109689.64 98065.32405 100120.1279 129963.3248 106902.8814 112102.2738 116640.6787 112569.7475 96398.30357 120735.6386 0.908510869 0.812231792 0.829250825 1.076428852 0.885429379 0.928493651 0.966083255 0.932365529 0.798424597 1 16.88149207 ALTVPELTQQVFDAK ddPTM_HeLa_A486_30min_R1 2 ALTVPELTQQVFDAK 15 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ; ; 176.51 3.50E-11 78800000 77798 67904 53157 48019 96163 77711 83876 96109 64018 91391 FALSE FALSE TRUE 72344.76195 62523.03974 73740.81399 111790.6587 84101.33986 68123.80693 62889.33765 74227.07874 69567.13178 68506.09874 1.05603389 0.912663849 1.076412398 1.631835133 1.227647485 0.994419594 0.918010787 1.083510521 1.015488154 1 16.06394481 -6.268389358 23.88382523 1.002238013 1.185260536 0.200350182 0.178332016 568.9165418 1955092.498 0.069717241 0.06289814 5.39E-07 6.268389358 0.183022524 ALVAT(ph)PGK ddPTM_HeLa_A485_30min_R1 5 ALVATPGK 8 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 ALVAT(1)PGK;ALVAT(1)PGK;ALVAT(1)PGK;ALVAT(1)PGK;ALVAT(1)PGK ;;;; 121.83 0.0033498 2760940000 4885160 4710260 3828720 6746410 6412740 5341580 7285050 7749720 4219770 8613230 TRUE FALSE FALSE 5971846.988 5261083.933 5245122.854 7114949.295 5774265.089 5621256.869 5728539.554 5849089.019 5066639.133 6466110.276 0.923560956 0.813639686 0.811171265 1.100344565 0.893004425 0.869341324 0.885932858 0.904576131 0.783568315 1 22.62446668 -6.721968161 0.006192257 1.796270696 2.97E-05 0.032190517 0.088421273 26773.06034 96.45252278 13845.01639 14126.59169 1.90E-07 6.721968161 -1.796240956 ALVAT(ph)PGK ddPTM_HeLa_A486_30min_R1 4 ALVATPGK 8 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 ALVAT(1)PGK;ALVAT(1)PGK;ALVAT(1)PGK;ALVAT(1)PGK ;;; 130.94 0.0026225 3224440000 6762600 7229100 4241350 3629890 6850600 8069600 9925000 8951200 5698340 10271100 TRUE FALSE FALSE 6288576.662 6656239.788 5883714.307 8450567.364 5991333.869 7074054.798 7441660.024 6913207.163 6192276.699 7699149.706 0.816788464 0.864542195 0.76420313 1.097597486 0.77818124 0.918809877 0.966556088 0.897918267 0.804280594 1 22.87626769 ALVAT(ph)PGKK ddPTM_HeLa_A485_30min_R1 4 ALVATPGKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 ALVAT(1)PGKK;ALVAT(1)PGKK;ALVAT(1)PGKK;ALVAT(1)PGKK ;;; 143.24 0.00014705 26026100000 32338800 22836900 15446300 47161600 35201900 31255200 47528400 46959500 23267100 59955500 TRUE FALSE FALSE 39532454.49 25507476.8 21160529.14 49737918.79 31697075.23 32891673.94 37373569.07 35442609 27936593.55 45009697.25 0.878309718 0.566710695 0.47013267 1.105048952 0.704227693 0.730768611 0.830344822 0.787443843 0.620679437 1 25.42373252 -11.67581463 2.025071275 6.995666563 0.743402257 0.17370381 0.167671822 9156426.695 384638.24 252530814.3 0.041963215 2.11E-12 11.67581463 -6.252264306 ALVAT(ph)PGKK ddPTM_HeLa_A486_30min_R1 5 ALVATPGKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 ALVAT(1)PGKK;ALVAT(1)PGKK;ALVAT(1)PGKK;ALVAT(1)PGKK;ALVAT(1)PGKK ;;;; 119.39 0.0004254 55917300000 21457750 20865840 9051880 12772680 18277380 24491210 31748050 31631740 13770880 33764730 TRUE FALSE FALSE 19953672.53 19212354.85 12557010.35 29735444.54 15984860.57 21469733.52 23804352.09 24429883.32 14964550.97 25309821.84 0.788376649 0.759086926 0.496131914 1.174857916 0.631567487 0.848276754 0.940518359 0.965233318 0.591254694 1 24.59319402 -5.235451156 24.97482448 0.868363482 0.688987407 0.206704159 0.176382456 1302.85153 1252046.029 0.046020734 0.079674881 5.81E-06 5.235451156 -0.179376075 ALVATPGK(ac)K ddPTM_HeLa_A485_30min_R1 2 ALVATPGKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; ALVATPGK(1)K;ALVATPGK(1)K 180.45 9.98E-08 633530000 537010 691050 706080 676260 1014970 1371640 2159180 3107800 2199950 3288000 FALSE TRUE FALSE 656466.0218 771862.2862 967288.3744 713202.3714 913916.023 1443456.949 1697853.554 2345607.177 2641459.786 2468362.111 0.265952074 0.31270221 0.391874584 0.288937498 0.370252006 0.584783303 0.687846223 0.950268669 1.070126532 1 21.23512262 -6.869757034 1.075521901 1.055758515 0.312009235 0.974841594 0.047532547 0.073928948 0.165188954 0.036231913 0.018717696 1.35E-07 6.869757034 -0.74374928 down ALVATPGK(ac)K ddPTM_HeLa_A486_30min_R1 2 ALVATPGKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; ALVATPGK(1)K;ALVATPGK(1)K 194.29 4.00E-11 1283850000 2822500 3092900 2536100 1130550 3540000 3176900 3589000 3637300 2709000 3703800 FALSE TRUE FALSE 2624657.325 2847807.34 3518145.839 2631977.535 3095980.191 2784966.378 2690994.239 2809166.192 2943818.301 2776344.372 0.94536447 1.025739951 1.267186403 0.948001106 1.115128304 1.003105525 0.969258089 1.011821955 1.060321742 1 21.4047551 -6.305405409 24.14682771 1.007162593 1.063621597 0.077955071 0.087881487 839.7342531 461191.872 0.031086072 0.02741559 4.95E-07 6.305405409 0.056459005 ALVDHENVISCPHLGASTK ddPTM_HeLa_A485_30min_R1 1 ALVDHENVISCPHLGASTK 19 0 A0A286YFA2;A0A286YF22;A0A2C9F2M7;O43175;A0A286YF78;A0A286YFL2 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 0 150.98 2.13E-10 14168000 10249 13288 12941 12867 17347 15014 17784 20834 14417 18749 FALSE FALSE TRUE 12528.85469 14841.91601 17728.41442 13569.89163 15619.87177 15800.10982 13984.30312 15724.42883 17310.35966 14075.21935 0.890135662 1.054471383 1.259548003 0.964098057 1.109742689 1.122548035 0.993540688 1.117171139 1.229846529 1 13.78086979 -4.30561546 4.182118844 1.099374614 0.880965068 0.317629038 0.091401638 0.22480428 7.91251452 0.022270845 0.130891826 4.95E-05 4.30561546 -0.218409546 ALVEFESNPEETREPGS(ph)PPSVQR ddPTM_HeLa_A485_30min_R1 8 ALVEFESNPEETREPGSPPSVQR 23 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 ALVEFESNPEET(0.012)REPGS(0.988)PPS(0.001)VQR;ALVEFESNPEETREPGS(0.98)PPS(0.02)VQR;ALVEFESNPEETREPGS(0.999)PPS(0.001)VQR;ALVEFESNPEETREPGS(1)PPSVQR;ALVEFESNPEETREPGS(1)PPSVQR;ALVEFESNPEETREPGS(1)PPSVQR;ALVEFESNPEET(0.001)REPGS(0.999)PPS(0.001)VQR;ALVEFESNPEET(0.013)REPGS(0.954)PPS(0.033)VQR ;;;;;;; 333.01 7.09E-123 59775100000 4148561 5822939 5972410 4380650 7062020 5304098 6166190 6391690 5979880 6290920 TRUE FALSE FALSE 5071394.082 6503881.063 8181852.992 4619953.817 6358900.493 5581812.37 4848733.133 4824118.006 7179987.065 4722709.42 1.073831488 1.377150378 1.732448953 0.978242235 1.346451777 1.181908916 1.026684622 1.021472544 1.520310997 1 22.17118334 -5.290298535 24.99892825 1.158405484 1.39274455 0.202961802 0.218606832 1130.368464 979166.7001 0.061205168 0.09080033 5.13E-06 5.290298535 0.234339066 ALVEFESNPEETREPGS(ph)PPSVQR ddPTM_HeLa_A486_30min_R1 7 ALVEFESNPEETREPGSPPSVQR 23 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 ALVEFESNPEETREPGS(0.999)PPS(0.001)VQR;ALVEFESNPEETREPGS(1)PPSVQR;ALVEFESNPEETREPGS(0.997)PPS(0.003)VQR;ALVEFESNPEETREPGS(0.998)PPS(0.002)VQR;ALVEFESNPEETREPGS(1)PPSVQR;ALVEFESNPEETREPGS(0.994)PPS(0.006)VQR;ALVEFESNPEETREPGS(0.985)PPS(0.015)VQR ;;;;;; 267.2 5.79E-62 58965330000 6392867 8168207 7821613 2485679 9103263 7050723 8365439 8493731 6897339 7173427 TRUE FALSE FALSE 5944760.036 7520928.529 10850351.02 5786786.331 7961446.87 6180876.483 6272317.682 6559893.868 7495205.898 5377154.188 1.105558782 1.398681954 2.017861241 1.0761801 1.480606022 1.149469825 1.166475325 1.219956438 1.393898266 1 22.35841141 ALVILAK ddPTM_HeLa_A486_30min_R1 2 ALVILAK 7 0 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 143.22 0.0035888 176612000 286591 341643 249760 127923 349427 363933 352382 355530 309438 402397 FALSE FALSE TRUE 266502.4509 314569.9644 346473.7608 297811.2089 305598.6074 319034.6467 264212.2965 274583.5802 336260.335 301634.172 0.88352871 1.042885699 1.148655534 0.987325829 1.01314319 1.057687345 0.87593622 0.91031987 1.114795226 1 18.20244035 ALVIVMGK ddPTM_HeLa_A485_30min_R1 2 ALVIVMGK 8 0 C9J0J7;G5E9Q6;P35080-2 C9J0J7 PFN2 Profilin;Profilin-2 0 0 ; ; 163.41 0.00019038 20091000 67698 69167 69861 75489 93750 87792 98518 111467 66118 103044 FALSE FALSE TRUE 82757.18654 77255.47898 95705.49106 79612.77292 84415.92082 92388.65337 77468.82448 84129.54348 79387.27613 77357.02718 1.069808259 0.998687279 1.237191947 1.029160192 1.091250839 1.194314941 1.001445212 1.087548818 1.026245178 1 16.23924473 -7.691731298 1.07106045 1.002089142 1.09596283 0.157456414 0.07245465 0.9207866 2.117327476 0.066628107 0.022822749 2.03E-08 7.691731298 0.093873688 ALVIVMGK ddPTM_HeLa_A486_30min_R1 1 ALVIVMGK 8 0 C9J0J7;G5E9Q6;P35080-2 C9J0J7 PFN2 Profilin;Profilin-2 0 0 163.41 0.00019038 31850000 37888 43574 35959 18285 51949 50341 48978 52089 41033 56563 FALSE FALSE TRUE 35232.24685 40121.03755 49883.28782 42568.40407 45433.07201 44130.43925 36723.18636 40229.47179 44589.77348 42399.25664 0.830963787 0.946267476 1.176513264 1.003989396 1.071553504 1.040830494 0.866128071 0.948824932 1.051664039 1 15.37175135 -9.358795536 14.15065987 1.000001912 0.996009177 0 0.096056463 0 0 0.097096757 0.023549423 4.38E-10 9.358795536 -0.003992735 ALVVPEPEPDS(ph)DSNQER ddPTM_HeLa_A485_30min_R1 3 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.999)DS(0.001)NQER;ALVVPEPEPDS(0.994)DS(0.006)NQER;ALVVPEPEPDS(0.885)DS(0.115)NQER ;; 140.74 8.92E-07 281830000 87406 120145 136116 110261 151780 103698 151071 149472 110005 124683 TRUE FALSE FALSE 106849.1632 134194.9126 186470.9727 116284.2792 136668.2503 109127.4669 118793.4467 112813.7576 132081.9945 93601.82272 1.141528659 1.433678413 1.992172452 1.242329218 1.460102446 1.165869037 1.269136041 1.205251718 1.41110494 1 16.514249 -5.953983028 1.851690317 1.228996626 1.500215303 0.20297688 0.231257035 0.56935873 3.969713155 0.086764504 0.098757995 1.11E-06 5.953983028 0.271218677 ALVVPEPEPDS(ph)DSNQER ddPTM_HeLa_A486_30min_R1 2 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(1)DSNQER;ALVVPEPEPDS(0.971)DS(0.029)NQER ; 190.82 5.59E-18 64114000 77798 93351 80032 28122 113232 84664 91482 90186 76410 84450 TRUE FALSE FALSE 72344.76195 85953.52678 111022.5337 65469.43721 99029.38671 74219.01648 68592.236 69652.61655 83033.28032 63303.17032 1.142829997 1.357807616 1.753822647 1.034220512 1.564366938 1.17243759 1.083551355 1.100302184 1.311676491 1 15.94999013 -6.454154661 10.05561311 1.131615634 1.372367106 0.260812117 0.200662037 0.822321659 117.390477 0.06893403 0.060712986 3.51E-07 6.454154661 0.240751472 ALVVPEPEPDS(ph)DSNQERK ddPTM_HeLa_A485_30min_R1 1 ALVVPEPEPDSDSNQERK 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.616)DS(0.384)NQERK 105.32 8.48E-05 149850000 129370 134940 86236 203860 117410 109350 179920 137040 133570 306580 TRUE FALSE FALSE 158147.9102 150720.0592 118138.285 214996.3556 105720.2481 115075.3969 141478.6222 103430.7251 160376.2738 230155.2482 0.687135798 0.654862578 0.513298245 0.934136229 0.4593432 0.499990323 0.61470952 0.449395467 0.696817801 1 17.81224781 -8.021410647 23.55732753 1.000000008 0.601911472 0.440131637 0.135067077 738.7570668 812827.0151 0.12928119 0.03338026 9.52E-09 8.021410647 -0.398088536 ALVVPEPEPDSDS(ph)NQER ddPTM_HeLa_A485_30min_R1 4 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDSDS(1)NQER;ALVVPEPEPDS(0.004)DS(0.996)NQER;ALVVPEPEPDS(0.039)DS(0.961)NQER;ALVVPEPEPDS(0.005)DS(0.995)NQER ;;; 290.82 2.87E-68 8215860000 928804 1263470 1426760 1048830 1430420 1137160 1403780 1492890 1259470 1346360 TRUE FALSE FALSE 1135413.245 1411221.826 1954577.896 1106124.927 1288002.362 1196699.939 1103850.935 1126756.387 1512234.076 1010737.23 1.123351561 1.396230181 1.93381409 1.094374378 1.274319699 1.183987196 1.092124543 1.114786666 1.496169362 1 19.94697655 ALVVPEPEPDSDS(ph)NQER ddPTM_HeLa_A486_30min_R1 4 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDSDS(1)NQER;ALVVPEPEPDS(0.038)DS(0.962)NQER;ALVVPEPEPDS(0.01)DS(0.99)NQER;ALVVPEPEPDS(0.003)DS(0.997)NQER ;;; 290.63 2.90E-68 5492140000 2363650 2925710 2954469 926549 3353010 2711544 3042064 3036650 2583508 2737960 TRUE FALSE FALSE 2197970.341 2693866.084 4098518.52 2157052.897 2932444.22 2377021.27 2280907.412 2345271.085 2807448.554 2052356.995 1.070949326 1.312571883 1.996981291 1.05101252 1.428817807 1.158190937 1.111359972 1.142720828 1.367914335 1 20.96885027 -6.005190266 1.564328908 1.163108316 1.413860395 0.134634128 0.259657422 0.787444822 3.926467227 0.104933378 0.116225416 9.88E-07 6.005190266 0.250752079 ALVVPEPEPDSDS(ph)NQERK ddPTM_HeLa_A485_30min_R1 2 ALVVPEPEPDSDSNQERK 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.006)DS(0.994)NQERK;ALVVPEPEPDS(0.064)DS(0.936)NQERK ; 166.27 2.36E-12 478960000 394090 346390 293030 609590 389120 345770 537040 460780 390050 806410 TRUE FALSE FALSE 481753.9609 386897.2973 401433.991 642890.3581 350377.8465 363873.9825 422297.0168 347772.9825 468329.4572 605386.8279 0.79577873 0.63909104 0.66310328 1.061949697 0.578766882 0.60106029 0.697565585 0.574464072 0.773603646 1 19.20749776 -8.021635106 22.76722586 1.000000011 0.700779464 0.302849218 0.13619495 668.5235293 703507.1926 0.133241838 0.034402895 9.51E-09 8.021635106 -0.299220547 ALVVPEPEPDSDS(ph)NQERK ddPTM_HeLa_A486_30min_R1 3 ALVVPEPEPDSDSNQERK 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.089)DS(0.911)NQERK;ALVVPEPEPDS(0.007)DS(0.993)NQERK;ALVVPEPEPDS(0.007)DS(0.993)NQERK ;; 168.27 1.97E-12 683220000 724310 838590 445010 298945 648510 889780 955960 906880 667980 1175310 TRUE FALSE FALSE 673539.6093 772137.0743 617329.7898 695959.0678 567167.8287 780007.9902 716768.6969 700403.2211 725881.0442 881004.726 0.764513049 0.876427846 0.700711099 0.789960652 0.643773878 0.885361868 0.81358099 0.795005067 0.823924121 1 19.74879023 -9.176526435 0.458940232 1.032727118 0.771342031 0.48856908 0.067339419 4.763213732 1.137023633 0.339907503 0.037855368 6.66E-10 9.176526435 -0.261385087 ALYDTFSAFGNILSCK ddPTM_HeLa_A485_30min_R1 2 ALYDTFSAFGNILSCK 16 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E5RGH3;B1ANR1;E5RJB9;H0YEQ8;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3 P11940;H0Y5F5 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 0 ; ; 369.06 2.73E-138 49899000 64428 53969 62174 69215 84981 81273 104489 108316 59942 104015 FALSE FALSE TRUE 78759.78633 60280.20508 85174.74988 72996.04019 76519.99325 85528.32861 82164.07155 81751.33117 71971.80958 78085.97475 1.008629099 0.771972243 1.090781669 0.934816277 0.979945419 1.095309739 1.052225727 1.04694001 0.921699573 1 16.25277582 -4.774187375 24.99999876 1.016942579 0.890300617 0.296377747 0.076950284 230.8934714 452805.4651 0.019384149 0.040772136 1.68E-05 4.774187375 -0.126641962 ALYDTFSAFGNILSCK ddPTM_HeLa_A486_30min_R1 2 ALYDTFSAFGNILSCK 16 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E5RGH3;B1ANR1;E5RJB9;H0YEQ8;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3 P11940;H0Y5F5 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 0 ; ; 402.11 2.01E-183 67148000 55528 100329 79622 37807 117563 99875 120717 110894 95295 108824 FALSE FALSE TRUE 51635.77395 92378.56465 110453.7708 88016.60666 102817.1523 87553.43795 90512.32979 85645.857 103555.2473 81573.76207 0.632994883 1.132454386 1.354035513 1.078981825 1.260419401 1.073303912 1.109576505 1.049919175 1.269467592 1 16.31581757 -4.263987139 6.017008058 1.1544143 0.619652112 0.677514642 0.106503702 0.069495768 12.39772217 0.025506134 0.1529925 5.45E-05 4.263987139 -0.534762189 ALYDYAGQEADELS(ph)FR ddPTM_HeLa_A485_30min_R1 2 ALYDYAGQEADELSFR 16 0 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 ALYDYAGQEADELS(1)FR;ALYDYAGQEADELS(1)FR ; 166.91 3.57E-12 56464000 99990 123122 112190 107685 148952 96177 138333 130029 118649 141882 TRUE FALSE FALSE 122232.4305 137520.0469 153693.7496 113567.5589 134121.8159 101212.679 108777.0245 98139.18387 142460.766 106513.4285 1.147577655 1.291105251 1.442951858 1.066227615 1.259201001 0.950233979 1.021251742 0.921378508 1.337491131 1 16.7006758 -5.825309161 1.621456993 1.046285679 1.27822595 0.292423429 0.143417786 0.442728305 2.41108017 0.052091891 0.06653392 1.50E-06 5.825309161 0.231940272 ALYDYAGQEADELS(ph)FR ddPTM_HeLa_A486_30min_R1 1 ALYDYAGQEADELSFR 16 0 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 ALYDYAGQEADELS(1)FR 135.09 9.05E-06 136720000 57813 86969 67135 24216 94404 65620 66813 76360 63188 63734 TRUE FALSE FALSE 53760.60725 80077.2597 93131.46994 56376.07181 82562.97004 57524.47158 50095.68072 58974.49493 68665.18672 47774.59156 1.125297056 1.676147448 1.949393326 1.180042989 1.728177413 1.204080866 1.048584176 1.234432216 1.437274176 1 15.54395592 -6.289818413 19.41331282 1.191006724 1.543486164 0.318194078 0.253557827 57.68136751 39456.83675 0.088712661 0.078299259 5.13E-07 6.289818413 0.35247944 ALYEAGERR ddPTM_HeLa_A485_30min_R1 1 ALYEAGERR 9 1 P04083 P04083 ANXA1 Annexin A1 0 0 59.368 0.0085434 0 90643 126900 107890 55881 140810 123990 121260 137610 107750 76971 FALSE FALSE TRUE 110806.2226 141739.8511 147803.0007 58933.63753 126790.462 130481.9247 95351.8104 103860.9317 129374.4367 57783.54625 1.917608555 2.452944832 2.557873483 1.019903439 2.194231234 2.258115556 1.650155046 1.797413598 2.238949408 1 15.81837113 -10.98389655 0.296842666 2.21E-13 2.094104914 0.328358408 0.427835992 40.54941383 1.842584675 29.40282715 0.476410249 1.04E-11 10.98389655 2.094104914 AMAATLGAGT(ph)PPRPQAR ddPTM_HeLa_A485_30min_R1 3 AMAATLGAGTPPRPQAR 17 1 P58107 P58107 EPPK1 Epiplakin 1 0 AMAATLGAGT(1)PPRPQAR;AMAAT(0.001)LGAGT(0.999)PPRPQAR;AMAATLGAGT(1)PPRPQAR ;; 148.2 7.00E-08 3304360000 144238 158700 186156 136421 214668 174599 199440 254569 159183 175980 TRUE FALSE FALSE 176323.2455 177258.5845 255022.851 143873.3338 193294.9002 183740.7337 156828.0147 192135.5536 191129.568 132111.4247 1.334655545 1.34173547 1.930361826 1.089030219 1.463120246 1.390801243 1.187088968 1.454344725 1.44673005 1 17.01139571 -12.38526057 0.267712181 1.16E-15 1.440141965 0.247611745 0.210168319 114.5230136 2.451755084 64.0647224 0.268139909 4.12E-13 12.38526057 1.440141965 AMAATLGAGT(ph)PPRPQAR ddPTM_HeLa_A486_30min_R1 3 AMAATLGAGTPPRPQAR 17 1 P58107 P58107 EPPK1 Epiplakin 1 0 AMAATLGAGT(1)PPRPQAR;AMAATLGAGT(1)PPRPQAR;AMAATLGAGT(1)PPRPQAR ;; 154.26 3.38E-08 2990690000 145799 178593 162319 49003 185676 140853 161501 173557 131927 155710 TRUE FALSE FALSE 135579.243 164440.6403 225173.2639 114081.4605 162386.7847 123475.9889 121091.7416 134041.8598 143362.5386 116719.2025 1.161584727 1.408856784 1.92918782 0.977400959 1.391260232 1.057889244 1.037462037 1.148413088 1.228268661 1 16.83268241 -5.298785714 24.99995079 1.13154613 1.490775113 0.406938745 0.209694144 565.4868775 378540.4384 0.059046808 0.087582902 5.03E-06 5.298785714 0.359228983 AMADELS(ph)EK ddPTM_HeLa_A485_30min_R1 6 AMADELSEK 9 0 Q03135;E9PCT5 Q03135 CAV1 Caveolin-1;Caveolin 1 0 AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK ;;;;; 158.02 2.54E-05 4196680000 4812790 3851020 2193210 7589450 3368360 4151530 6083110 5435740 3510560 14056200 TRUE FALSE FALSE 5883378.532 4301363.29 3004569.646 8004042.436 3032994.251 4368897.691 4783403.854 4102616.242 4215097.191 10552248.03 0.557547408 0.407625302 0.28473266 0.758515381 0.287426361 0.414025304 0.453306617 0.388790733 0.399450163 1 23.33104704 -10.36158711 3.532964651 1.003124994 0.436725945 0.626422851 0.129947276 206356046.6 311033186.3 6680068.226 0.031006286 4.35E-11 10.36158711 -0.566399049 AMADELS(ph)EK ddPTM_HeLa_A486_30min_R1 5 AMADELSEK 9 0 Q03135;E9PCT5 Q03135 CAV1 Caveolin-1;Caveolin 1 0 AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK;AMADELS(1)EK ;;;; 168.71 7.47E-06 2723440000 5224630 5270210 3307020 2861610 5605630 6497290 7471600 6129560 5838220 11466800 TRUE FALSE FALSE 4858410.417 4852579.366 4587586.709 6661972.698 4902519.615 5695720.419 5602126.653 4733992.995 6344281.61 8595438.644 0.565231237 0.564552848 0.533723397 0.775059072 0.570362935 0.662644532 0.651755761 0.550756418 0.738098644 1 23.03513983 -14 0.229387274 3.041849679 0.578847395 0.720981306 0.072619339 84.82654091 0.849313316 80.24911012 0.126302792 1.00E-14 14 -2.463002283 AMDFSVLWDFEGYIK ddPTM_HeLa_A485_30min_R1 1 AMDFSVLWDFEGYIK 15 0 Q8TDI7-3;Q8TDI7 Q8TDI7-3 TMC2 Transmembrane channel-like protein 2 0 0 48.14 0.034359 84461000 131060 150360 115410 65248 431300 55388 255950 139250 109570 401430 FALSE FALSE TRUE 160213.8448 167943.294 158104.9616 68812.33302 388358.2576 58288.03003 201264.1916 105098.7192 131559.694 301360.8888 0.531634498 0.55728298 0.524636632 0.228338632 1.288681684 0.193416041 0.667851069 0.348747044 0.436551984 1 18.20113267 -11.11341173 2.405277274 1.874443867 0.533540466 0.190566195 0.290053856 27930234.18 8033622.131 133428277.6 0.068903302 7.70E-12 11.11341173 -1.340903402 AMDFSVLWDFEGYIK ddPTM_HeLa_A486_30min_R1 1 AMDFSVLWDFEGYIK 15 0 Q8TDI7-3;Q8TDI7 Q8TDI7-3 TMC2 Transmembrane channel-like protein 2 0 0 48.14 0.034359 72488000 206020 109340 61077 10059 93657 96054 140650 157270 147810 145170 FALSE FALSE TRUE 191579.0619 100675.5002 84727.6501 23417.86035 81909.66574 84203.83409 105457.8824 121463.0542 160622.2898 108818.4871 1.760537818 0.925169085 0.778614483 0.21520112 0.752718292 0.773800816 0.969117336 1.116198703 1.476057002 1 16.73156415 -7.227047899 2.520829995 1.244384149 0.834069905 0.13201947 0.372304096 0.570469576 7.025324983 0.247563076 0.112257162 5.93E-08 7.227047899 -0.410314243 AMDNHS(ph)DS(ph)EEELAAFCPQLDDSTVAR ddPTM_HeLa_A485_30min_R1 3 AMDNHSDSEEELAAFCPQLDDSTVAR 26 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 0 AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR ;; 191.5 1.41E-20 1248010000 481484 577645 550183 396653 650680 526119 542045 606380 445067 716370 TRUE FALSE FALSE 588588.4547 645195.5579 753718.5867 418321.149 585896.0145 553665.7773 426232.6576 457664.3542 534387.8645 537792.1428 1.094453429 1.19971176 1.40150539 0.777849127 1.089446959 1.0295163 0.792560217 0.851006026 0.9936699 1 19.03668915 -5.263645419 24.99984594 0.931861463 1.228672348 0.569752576 0.118835932 143.9900667 1631766.467 0.033873379 0.053161637 5.45E-06 5.263645419 0.296810885 AMDNHS(ph)DS(ph)EEELAAFCPQLDDSTVAR ddPTM_HeLa_A486_30min_R1 4 AMDNHSDSEEELAAFCPQLDDSTVAR 26 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 0 AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR ;;; 190.23 1.74E-20 1259430000 319119 367140 331047 141187 430540 327070 385757 352890 345565 352268 TRUE FALSE FALSE 296750.406 338046.4893 459237.2641 328690.4712 376537.6586 286719.4288 289236.5185 272544.6505 375518.8524 264057.7999 1.123808523 1.280198841 1.739154323 1.244767135 1.42596681 1.085820714 1.095353057 1.032140125 1.42210854 1 18.01049423 -6.263159728 24.97845081 1.127110024 1.372544848 0.289972075 0.184090954 204.6664693 2971615.302 0.063628676 0.059012577 5.46E-07 6.263159728 0.245434824 AMGDS(ph)DDEYDR ddPTM_HeLa_A485_30min_R1 2 AMGDSDDEYDR 11 0 C9JUL9 C9JUL9 SRRT 1 0 AMGDS(1)DDEYDR;AMGDS(1)DDEYDR ; 223.22 5.95E-18 272510000 231403 283860 248558 308940 352600 286400 371360 377530 286230 398460 TRUE FALSE FALSE 282877.799 317054.9577 340509.9476 325816.6099 317493.9059 301395.4611 292015.9023 284940.1756 343673.7355 299131.2551 0.945664467 1.05991919 1.138329552 1.089209517 1.0613866 1.007569273 0.976213275 0.952559021 1.14890614 1 18.19041913 -6.24357545 7.59144092 1.011502323 1.065154146 0.083936897 0.066331113 0.416912779 132.648571 0.02274851 0.02210355 5.71E-07 6.24357545 0.053651823 AMGDS(ph)DDEYDR ddPTM_HeLa_A486_30min_R1 1 AMGDSDDEYDR 11 0 C9JUL9 C9JUL9 SRRT 1 0 AMGDS(1)DDEYDR 221.56 6.87E-18 308950000 195340 212400 159970 95642 228710 237570 278260 244040 172000 275170 TRUE FALSE FALSE 181647.6747 195568.6505 221914.6681 222659.4095 200023.0592 208261.0288 208636.4049 188477.4194 186909.0985 206265.6409 0.880649215 0.948139736 1.075868318 1.079478911 0.969735232 1.009673874 1.011493741 0.913760617 0.906157214 1 17.654144 -7.257536373 24.77695707 0.932469185 1.0003082 0.152190817 0.059805882 499.1581962 3168767.775 0.031285067 0.017184423 5.53E-08 7.257536373 0.067839014 AMGDS(ph)DDEYDRR ddPTM_HeLa_A485_30min_R1 1 AMGDSDDEYDRR 12 1 C9JUL9 C9JUL9 SRRT 1 0 AMGDS(1)DDEYDRR 124.81 2.56E-05 293340000 178600 313660 299990 180200 350940 297490 263400 307560 278330 235690 TRUE FALSE FALSE 218328.9538 350339.8085 410968.7846 190043.8697 315999.1814 313066.1164 207122.4382 232130.4278 334188.278 176936.8206 1.233937363 1.980027715 2.322686614 1.074077567 1.785943595 1.769366689 1.170601108 1.311939635 1.888743547 1 17.43287478 -11.55367815 0.148541118 8.96E-09 1.87548591 0.180761285 0.387183385 94.01381705 1.680560742 33.71878743 2.377822869 2.79E-12 11.55367815 1.875485901 AMGDS(ph)DDEYDRR ddPTM_HeLa_A486_30min_R1 2 AMGDSDDEYDRR 12 1 C9JUL9 C9JUL9 SRRT 1 0 AMGDS(1)DDEYDRR;AMGDS(1)DDEYDRR ; 165.64 1.34E-10 600190000 563960 677560 656780 247680 927690 622890 673220 708950 590560 605970 TRUE FALSE FALSE 524429.3163 623867.678 911102.8052 576611.5571 811330.4698 546044.1649 504773.2354 547537.5613 641750.2163 454231.1678 1.154542782 1.373458543 2.005813052 1.269423144 1.786162041 1.202128351 1.111269484 1.205416097 1.412827348 1 18.79306718 -6.358858637 10.62104645 1.193729417 1.5230571 0.30776412 0.248454152 0.69670461 72.45462812 0.087040234 0.076731492 4.38E-07 6.358858637 0.329327683 AMGIMNSFVNDIFER ddPTM_HeLa_A485_30min_R1 14 AMGIMNSFVNDIFER 15 0 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;;;;;;;;;;;;; ;;;;;;;;;;;;; 417.7 1.56E-200 2173131000 1728377 2489663 2662241 1680129 2843022 2395255.6 2715311 3130326 2297226 2570473 FALSE FALSE TRUE 2112848.501 2780807.431 3647114.731 1771910.193 2559960.747 2520667.479 2135162.623 2362608.64 2758258.187 1929701.387 1.094909562 1.441055828 1.889989174 0.918230253 1.326609788 1.306247431 1.106473072 1.224338986 1.429370474 1 20.87994618 -5.280243018 24.99554385 1.204061666 1.471892064 0.246127692 0.22964571 1205.804699 1602865.147 0.064550789 0.095930577 5.25E-06 5.280243018 0.267830398 AMGIMNSFVNDIFER ddPTM_HeLa_A486_30min_R1 14 AMGIMNSFVNDIFER 15 0 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;;;;;;;;;;;;; ;;;;;;;;;;;;; 466.38 9.42E-254 2405241000 2960357 3161639 3093181 988052 3864448 2735639 3187208 3198833 2938066 3163889 FALSE FALSE TRUE 2752851.262 2911099.211 4290943.521 2300234.989 3379732.897 2398143.674 2389734.848 2470528.556 3192739.926 2371630.601 1.160742006 1.227467385 1.809279877 0.969895981 1.425067165 1.011179259 1.007633671 1.041700404 1.346221425 1 21.17744789 -6.26665242 24.66647139 1.079346142 1.321333361 0.220886773 0.222640068 578.7221866 2738321.901 0.076560368 0.069522287 5.41E-07 6.26665242 0.241987219 AMKPPGGESSNLFGS(ph)PEEATPSSRPNR ddPTM_HeLa_A485_30min_R1 1 AMKPPGGESSNLFGSPEEATPSSRPNR 27 2 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BMM8;B4E1P3 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 AMKPPGGESSNLFGS(1)PEEATPSSRPNR 182.81 1.64E-20 2313800000 620950 688300 508760 687170 939780 765590 850530 1028700 622140 896950 TRUE FALSE FALSE 759078.1852 768790.6976 696971.4953 724708.3571 846212.2034 805675.1086 668807.3173 776409.7121 746997.7914 673356.8721 1.12730443 1.141728449 1.035069996 1.076261916 1.256706864 1.196505363 0.993243472 1.153043422 1.109363879 1 19.3610118 -9.511506516 0.643526837 0.986422092 1.123827941 0.206270532 0.071627905 22.32081065 7.121098518 0.788477252 0.029340317 3.08E-10 9.511506516 0.137405849 AMKPPGGESSNLFGS(ph)PEEATPSSRPNR ddPTM_HeLa_A486_30min_R1 4 AMKPPGGESSNLFGSPEEATPSSRPNR 27 2 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BMM8;B4E1P3 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGES(0.001)S(0.007)NLFGS(0.991)PEEATPSSRPNR;AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGESSNLFGS(1)PEEATPSSRPNR ;;; 179.85 3.14E-20 2619070000 750928 771894 499837 264194 838979 682285 850014 856739 583599 786345 TRUE FALSE FALSE 698291.825 710726.3083 693387.2725 615056.9836 733746.4307 598111.6137 637331.5067 661678.2322 634185.8312 589439.0938 1.18467172 1.20576717 1.176351009 1.043461471 1.244821456 1.014713174 1.081250825 1.12255573 1.075914099 1 19.16898322 -1.000000001 0.10916483 0.955080801 1.716701251 0.443180736 0.060084131 103.9546295 0.794944732 0.559117926 11.92026997 0.1 1.000000001 0.76162045 AMLDQLMGT(ph)SRDGDTTR ddPTM_HeLa_A485_30min_R1 1 AMLDQLMGTSRDGDTTR 17 1 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 AMLDQLMGT(0.572)S(0.428)RDGDTTR 73.405 0.0012438 0 13809 22239 30199 18023 85592 44343 64185 105670 37734 47692 TRUE FALSE FALSE 16880.76441 24839.6576 41370.86679 19007.55085 77070.15995 46664.73091 50471.35041 79754.26682 45306.86768 35803.26211 0.47148677 0.693781967 1.155505514 0.5308888 2.152601618 1.303365341 1.409685806 2.227569839 1.265439656 1 15.12780342 -5.746891899 24.99940838 1.600830439 0.74316248 0.518265157 0.398383488 187.1369024 321587.7222 0.113622469 0.146026571 1.79E-06 5.746891899 -0.85766796 AMLDQLMGT(ph)SRDGDTTR ddPTM_HeLa_A486_30min_R1 1 AMLDQLMGTSRDGDTTR 17 1 Q9Y383 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 AMLDQLMGT(0.5)S(0.5)RDGDTTR 72.568 0.0080627 72630000 34090 32207 78683 35788 182740 53991 93163 129020 43840 66489 TRUE FALSE FALSE 31700.46704 29654.80002 109151.1648 83316.27263 159819.0452 47330.13936 69852.63202 99644.96249 47640.0865 49839.72163 0.636048236 0.595003324 2.190043629 1.671684149 3.206660069 0.949646945 1.401545389 1.999308167 0.955865822 1 15.60500839 -2.634597487 12.76303229 1.523091914 1.266906513 0 0.782001668 0 0 0.182833045 0 0.002319543 2.634597487 -0.256185401 AMLDQLMGTS(ph)R ddPTM_HeLa_A485_30min_R1 5 AMLDQLMGTSR 11 0 Q9Y383;V9GZ75;F8WEU3 Q9Y383 LUC7L2;C7orf55-LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 AMLDQLMGT(0.097)S(0.903)R;AMLDQLMGT(0.021)S(0.979)R;AMLDQLMGT(0.148)S(0.852)R;AMLDQLMGT(0.101)S(0.899)R;AMLDQLMGT(0.012)S(0.988)R ;;;; 186.56 1.27E-10 2706290000 2666440 3303860 3479660 2387120 5100220 4093360 4650870 4892940 4722980 5504000 TRUE FALSE FALSE 3259580.379 3690217.687 4766931.035 2517522.321 4592424.189 4307682 3657173.63 3692938.793 5670838.764 4131954.094 0.788871392 0.893092615 1.153674733 0.60928129 1.111441242 1.042529007 0.885095417 0.893751167 1.372435084 1 21.9783928 -7.737939314 24.99878831 1.186217701 0.927610778 0.275811721 0.170934669 253.7549456 269939.7296 0.110420598 0.041682876 1.83E-08 7.737939314 -0.258606923 AMLDQLMGTS(ph)R ddPTM_HeLa_A486_30min_R1 11 AMLDQLMGTSR 11 0 Q9Y383;V9GZ75;F8WEU3 Q9Y383 LUC7L2;C7orf55-LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 AMLDQLMGT(0.046)S(0.954)R;AMLDQLMGT(0.162)S(0.838)R;AMLDQLMGT(0.164)S(0.836)R;AMLDQLMGT(0.25)S(0.75)R;AMLDQLMGT(0.212)S(0.788)R;AMLDQLMGT(0.146)S(0.854)R;AMLDQLMGT(0.175)S(0.825)R;AMLDQLMGT(0.027)S(0.973)R;AMLDQLMGT(0.004)S(0.996)R;AMLDQLMGT(0.046)S(0.954)R;AMLDQLMGT(0.186)S(0.814)R ;;;;;;;;;; 200.9 1.15E-14 5106388200 6611115 6816259 6330957 2087332 9260967 7883485 8687957 8892430 7757767 12046300 TRUE FALSE FALSE 6147709.978 6276113.812 8782473.099 4859414.384 8099370.164 6910900.774 6514138.267 6867817.809 8430216.49 9029828.072 0.680822484 0.695042448 0.972606901 0.538151374 0.896957295 0.765341346 0.721402248 0.760570163 0.933596567 1 23.10626709 -7.847222559 3.413585444 0.996802627 0.755139044 0.373374107 0.111846087 0.231806644 4.953204829 0.100359 0.027127277 1.42E-08 7.847222559 -0.241663583 AMLDS(ph)GIYPPGSPGK ddPTM_HeLa_A485_30min_R1 1 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 0 AMLDS(0.805)GIY(0.195)PPGSPGK 150.11 5.46E-08 1045600000 184140 176690 152220 257640 229720 198400 343990 300270 144360 301760 TRUE FALSE FALSE 225101.3077 197352.3585 208532.5124 271714.2208 206848.2702 208787.9172 270493.7264 226628.3117 173331.7279 226536.7855 0.993663379 0.871171356 0.920523843 1.199426487 0.913089103 0.921651275 1.194038866 1.000404024 0.765137227 1 17.78938581 AMLDSGIY(ph)PPGSPGK ddPTM_HeLa_A486_30min_R1 1 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 0 AMLDS(0.023)GIY(0.976)PPGS(0.001)PGK 145.99 6.52E-08 729730000 145470 203950 140130 106170 193580 238410 285510 262900 142850 248340 TRUE FALSE FALSE 135273.3042 187788.2592 194392.0888 247169.1255 169299.3913 208997.3982 214072.3782 203043.4091 155232.353 186154.0476 0.726673988 1.008778813 1.044253893 1.327766593 0.909458556 1.122712081 1.149974341 1.090727877 0.833891903 1 17.50613746 -4.245989473 2.537802436 1.071917886 0.64482688 0.3743523 0.127824618 0.553332561 4.390381694 0.032711935 0.517004422 5.68E-05 4.245989473 -0.427091006 AMLDSGIYPPGS(ph)PGK ddPTM_HeLa_A485_30min_R1 5 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 0 AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK ;;;; 277 2.86E-58 912870000 1165340 1110090 882888 1626860 1434640 1342390 1926890 1898870 994125 2237050 TRUE FALSE FALSE 1424565.863 1239905.369 1209505.011 1715731.242 1291802.204 1412675.465 1515194.21 1433169.155 1193636.769 1679394.605 0.848261545 0.738304961 0.720202987 1.021636748 0.769207071 0.841181376 0.902226437 0.853384399 0.7107542 1 20.67950983 -11.45745327 2.259101985 2.886615729 0.825341859 0.258459072 0.089953636 6010131.472 508372.9147 58343737.07 0.022678567 3.49E-12 11.45745327 -2.06127387 AMLDSGIYPPGS(ph)PGK ddPTM_HeLa_A486_30min_R1 6 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 0 AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK ;;;;; 197.88 3.22E-25 1338310000 2260350 2443430 1449000 1292940 2473400 2715040 3456680 3197550 1978880 3987140 TRUE FALSE FALSE 2101911.137 2249803.708 2010091.606 3010029.662 2163163.108 2380085.969 2591782.103 2469537.667 2150410.912 2988734.192 0.703278044 0.752761391 0.672556165 1.007125247 0.72377233 0.796352508 0.867183877 0.826282134 0.719505574 1 21.51110316 -14 0.15687938 1.721084482 0.734207713 0.321336104 0.093117414 168.6826725 1.535018835 38.3806682 0.418365379 1.00E-14 14 -0.986876769 AMLPGS(ph)PLFTR ddPTM_HeLa_A485_30min_R1 9 AMLPGSPLFTR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(0.998)PLFT(0.002)R;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR ;;;;;;;; 228.73 2.89E-18 4180335000 1701135 2166107 2139080 1527089 2456516 2237744 2423842 2506441 1880950 2288359 TRUE FALSE FALSE 2079546.612 2419414.371 2930414.707 1610510.005 2211936.642 2354908.816 1905968.356 1891732.415 2258439.412 1717913.215 1.210507372 1.408344932 1.705799036 0.937480421 1.287571818 1.370796146 1.109467195 1.101180431 1.314641154 1 20.71222573 -6.792782163 0.183856786 0.934251437 1.51820512 0.199660817 0.191108804 7.288449724 0.959231931 0.978358421 1.549658354 1.61E-07 6.792782163 0.583953683 AMLPGS(ph)PLFTR ddPTM_HeLa_A486_30min_R1 10 AMLPGSPLFTR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(1)PLFTR;AMLPGS(0.997)PLFT(0.003)R;AMLPGS(0.999)PLFT(0.001)R ;;;;;;;;; 213.63 1.45E-15 4824071000 2917879 3408367 3262744 1125832 4165694 2887376 3343674 3402915 3055725 3416723 TRUE FALSE FALSE 2713350.75 3138275.586 4526165.856 2620993.792 3643193.815 2531160.906 2507051.399 2628145.54 3320597.703 2561153.322 1.059425348 1.225336867 1.767237368 1.023364658 1.422481733 0.988289488 0.978875953 1.026157051 1.296524373 1 21.28836219 -6.268466203 24.92736032 1.054660845 1.306082046 0.246209352 0.211174886 788.554243 2797354.148 0.073665445 0.066314332 5.39E-07 6.268466203 0.251421201 AMREREER ddPTM_HeLa_A486_30min_R1 1 AMREREER 8 2 A8MXQ1;P53801 A8MXQ1 PTTG1IP Pituitary tumor-transforming gene 1 protein-interacting protein 0 0 68.224 0.0036691 0 285560 344640 280100 15264 428220 300690 220140 319200 283880 100780 FALSE FALSE TRUE 265543.7186 317329.4712 388562.2213 35535.3634 374508.6546 263593.925 165058.6436 246525.1281 308486.947 75544.03203 3.515085328 4.200589546 5.143519758 0.470392729 4.957488296 3.489275299 2.184932935 3.263330292 4.083538284 1 16.20503017 -10.13310672 0.377381376 9.79E-40 3.608108408 0.241054381 1.296454664 26.59340491 2.564470578 33.03117838 0.929329239 7.36E-11 10.13310672 3.608108408 AMS(ph)LNTLNVDAPR ddPTM_HeLa_A485_30min_R1 3 AMSLNTLNVDAPR 13 0 Q6P597-2;Q6P597;Q6P597-3 Q6P597-2 KLC3 Kinesin light chain 3 1 0 AMS(1)LNTLNVDAPR;AMS(0.999)LNT(0.001)LNVDAPR;AMS(0.999)LNT(0.001)LNVDAPR ;; 287.43 2.17E-49 640850000 370630 435540 416869 403740 556660 427170 573930 567430 410170 539750 TRUE FALSE FALSE 453075.3648 486472.6143 571086.1905 425795.2939 501236.9758 449535.9607 451305.1669 428266.9028 492487.3567 405200.2584 1.118151718 1.200573307 1.409392464 1.050826807 1.237010504 1.109416767 1.113783019 1.056926529 1.215417183 1 18.62827557 -6.141140213 1.142558204 1.097036049 1.220112035 0.202879979 0.100476529 0.794212217 2.1654884 0.049008242 0.049430054 7.23E-07 6.141140213 0.123075986 AMS(ph)LNTLNVDAPR ddPTM_HeLa_A486_30min_R1 3 AMSLNTLNVDAPR 13 0 Q6P597-2;Q6P597;Q6P597-3 Q6P597-2 KLC3 Kinesin light chain 3 1 0 AMS(0.775)LNT(0.225)LNVDAPR;AMS(0.995)LNT(0.005)LNVDAPR;AMS(1)LNTLNVDAPR ;; 222.75 1.98E-27 510010000 247863 310123 297827 113123 354349 310596 379130 391520 272914 303747 TRUE FALSE FALSE 230489.0837 285547.724 413153.5905 263356.0609 309903.2442 272277.8234 284267.664 302379.4428 296570.4053 227686.7741 1.01230774 1.254125213 1.814570003 1.156659459 1.361094624 1.195843827 1.248503191 1.328050098 1.302536813 1 17.79669097 AMS(ph)TTSIS(ph)SPQPGK ddPTM_HeLa_A486_30min_R1 1 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 2 0 AMS(0.98)T(0.02)T(0.003)S(0.196)IS(0.766)S(0.035)PQPGK 131.53 3.71E-05 113980000 251720 249240 127080 111940 244300 321640 352130 367680 213920 372080 TRUE FALSE FALSE 234075.7279 229489.3147 176288.7793 260601.9771 213657.616 281959.327 264023.3495 283967.2904 232462.7578 278908.7462 0.839255603 0.822811467 0.632066157 0.934362872 0.766048462 1.010937559 0.946629868 1.018136915 0.833472457 1 18.08943365 -6.257922923 24.96880544 0.962018575 0.798493006 0.475466117 0.085562837 270.5742189 1921231.207 0.028015698 0.026954804 5.52E-07 6.257922923 -0.163525569 AMS(ph)TTSISS(ph)PQPGK ddPTM_HeLa_A486_30min_R1 1 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 2 0 AMS(0.997)T(0.003)TS(0.28)IS(0.19)S(0.53)PQPGK 185.14 1.60E-15 0 249950 246330 129310 91388 245060 310790 356440 389220 212370 364840 TRUE FALSE FALSE 232429.7957 226809.9137 179382.295 212755.8825 214322.2897 272447.8897 267254.942 300603.1026 230778.4026 273481.6893 0.849891619 0.829342229 0.655920678 0.777952934 0.783680583 0.996219858 0.977231575 1.099170856 0.843853214 1 18.06108472 -6.252358595 7.574052368 0.989313758 0.774874209 0.647901032 0.075071554 0.089493075 38.64992526 0.025305089 0.024210798 5.59E-07 6.252358595 -0.214439549 AMS(ph)TTSISSPQPGK ddPTM_HeLa_A485_30min_R1 2 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.333)T(0.333)T(0.333)SISSPQPGK;AMS(0.953)T(0.045)T(0.002)SISSPQPGK ; 245.56 1.55E-35 766110000 519000 450140 396670 496750 547870 491590 752830 774190 471690 793840 TRUE FALSE FALSE 634449.7595 502779.9573 543414.7398 523886.1947 493322.1391 517328.8923 591981.7204 584318.6886 566353.8564 595950.2975 1.0646018 0.843660888 0.91184574 0.879076992 0.827790742 0.868073889 0.993340758 0.98048225 0.9503374 1 19.18483249 -6.765917861 24.99914319 0.979413637 0.893069293 0.290225792 0.062260204 143.8789907 803128.9875 0.025192748 0.01763487 1.71E-07 6.765917861 -0.086344343 AMS(ph)TTSISSPQPGK ddPTM_HeLa_A486_30min_R1 4 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.499)T(0.499)T(0.002)SISSPQPGK;AMS(0.99)T(0.009)T(0.001)SISSPQPGK;AMS(0.992)T(0.008)TSISSPQPGK;AMS(0.948)T(0.049)T(0.003)S(0.001)ISSPQPGK ;;; 333.59 2.61E-81 2348750000 2204430 2249270 1133650 735728 1890540 2774470 3111240 3770280 1930940 2584030 TRUE FALSE FALSE 2049910.841 2071029.653 1572629.64 1712811.966 1653410.845 2432184.1 2332774.845 2911869.549 2098315.434 1936972.069 1.058306867 1.06920987 0.811901042 0.88427293 0.85360593 1.25566297 1.204340983 1.503310035 1.083296692 1 20.88537172 -6.268918514 24.69543128 1.24046771 0.933181874 0.464261259 0.145169874 406.2391947 1341361.396 0.05050503 0.045422141 5.38E-07 6.268918514 -0.307285836 AMST(ph)TSISSPQPGK ddPTM_HeLa_A485_30min_R1 2 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.032)T(0.484)T(0.484)SISSPQPGK;AMS(0.042)T(0.479)T(0.479)SISSPQPGK ; 328.38 1.84E-80 2818300000 1717820 1516040 1314150 1888330 2051480 1590620 2446150 2550450 1647910 2681510 TRUE FALSE FALSE 2099943.133 1693327.69 1800308.771 1991484.686 1847227.448 1673902.404 1923510.069 1924948.139 1978630.421 2013058.907 1.0431603 0.841171455 0.894314998 0.989282867 0.917622153 0.831521819 0.955516037 0.956230408 0.982897428 1 20.94095796 -7.410052093 1.954255779 0.990620533 0.918015687 0.169268526 0.059853518 0.622764407 4.321299538 0.048147533 0.017085993 3.89E-08 7.410052093 -0.072604846 AMSTT(ph)SISSPQPGK ddPTM_HeLa_A486_30min_R1 1 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.063)T(0.063)T(0.873)SISSPQPGK 289.23 5.39E-50 1551600000 909450 968200 490610 343890 870620 1166600 1313200 1610700 834350 1153300 TRUE FALSE FALSE 845702.2514 891476.3059 680587.331 800593.2992 761418.7214 1022676.753 984623.4704 1243978.771 906672.1298 864506.1733 0.978248944 1.031197154 0.787255606 0.926070078 0.880755679 1.182960614 1.13894325 1.438947239 1.048774616 1 19.72151674 -6.267439864 23.92824755 1.187923006 0.919728063 0.478144183 0.124527995 216.2621962 862388.8724 0.042365529 0.038372654 5.40E-07 6.267439864 -0.268194944 AMSTTSIS(ph)SPQPGK ddPTM_HeLa_A485_30min_R1 2 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.006)T(0.005)T(0.048)S(0.033)IS(0.509)S(0.398)PQPGK;AMST(0.004)T(0.041)S(0.386)IS(0.405)S(0.164)PQPGK ; 102.87 0.0004954 6170600000 2190020 2241660 2068090 2336950 2960920 2619310 3372470 3204350 2282620 3450140 TRUE FALSE FALSE 2677182.394 2503802.637 2833162.551 2464611.661 2666120.408 2756453.021 2651914.234 2418478.138 2740720.897 2590083.593 1.033627795 0.966687965 1.093849851 0.951556802 1.029356896 1.064233227 1.023872064 0.933745206 1.058159244 1 21.30456723 AMSTTSIS(ph)SPQPGK ddPTM_HeLa_A486_30min_R1 1 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMSTT(0.001)S(0.01)IS(0.577)S(0.412)PQPGK 102.4 0.00052874 835370000 1839800 1772800 1241500 602360 1978500 1887800 2087700 2214300 1488200 2444800 TRUE FALSE FALSE 1710839.521 1632316.872 1722242.049 1402324.522 1730338.081 1654902.43 1565335.379 1710152.228 1617198.374 1832606.167 0.933555475 0.890707944 0.939777503 0.765207794 0.944195274 0.903032228 0.854158087 0.933180439 0.882458219 1 20.80546535 -9.762204063 0.66658488 1.016171055 0.891713167 0.277317518 0.051163423 29.16534313 8.199294152 1.104482651 0.018637941 1.73E-10 9.762204063 -0.124457888 AMSTTSISS(ph)PQPGK ddPTM_HeLa_A485_30min_R1 7 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMSTTS(0.003)IS(0.125)S(0.872)PQPGK;AMSTTSIS(0.008)S(0.992)PQPGK;AMSTTS(0.003)IS(0.183)S(0.814)PQPGK;AMSTT(0.001)S(0.005)IS(0.257)S(0.737)PQPGK;AMSTTS(0.023)IS(0.044)S(0.933)PQPGK;AMS(0.001)T(0.003)T(0.014)S(0.101)IS(0.111)S(0.771)PQPGK;AMST(0.002)T(0.024)S(0.181)IS(0.077)S(0.716)PQPGK ;;;;;; 246.77 1.28E-35 4813690000 6532150 6708550 5862550 7146910 9208570 7933180 9771040 9419950 6813320 10345500 TRUE FALSE FALSE 7985204.232 7493056.566 8031351.206 7537327.596 8291732.438 8348549.038 7683377.482 7109692.493 8180690.829 7766557.245 1.028152369 0.964784824 1.034094123 0.970485037 1.067620076 1.074935621 0.989290008 0.915423948 1.053322672 1 22.88884379 -12.9837431 14.39323795 1.000000249 1.008637769 0 0.048390473 0 0 0 0.011273827 1.04E-13 12.9837431 0.00863752 AMSTTSISS(ph)PQPGK ddPTM_HeLa_A486_30min_R1 9 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMSTTS(0.002)IS(0.229)S(0.768)PQPGK;AMSTT(0.002)S(0.012)IS(0.193)S(0.792)PQPGK;AMSTTS(0.033)IS(0.255)S(0.713)PQPGK;AMSTT(0.012)S(0.009)IS(0.021)S(0.958)PQPGK;AMS(0.019)T(0.019)T(0.219)S(0.219)IS(0.112)S(0.411)PQPGK;AMSTTS(0.001)IS(0.143)S(0.856)PQPGK;AMST(0.002)T(0.044)S(0.031)IS(0.112)S(0.811)PQPGK;AMSTTSIS(0.066)S(0.933)PQPGK;AMST(0.001)T(0.014)S(0.12)IS(0.161)S(0.704)PQPGK ;;;;;;;; 162.88 7.08E-11 6887400000 8691800 8870690 6036210 2968093 9844810 8934880 10104870 10018180 7209790 10844830 TRUE FALSE FALSE 8082549.705 8167744.218 8373592.167 6909870.503 8609982.131 7832585.349 7576524.648 7737259.109 7834740.402 8129213.98 0.994259682 1.004739725 1.030061724 0.850004751 1.059140792 0.963510786 0.932011959 0.951784407 0.963775886 1 22.95468443 AMTLS(ph)PQEEVAAGQMASSSR ddPTM_HeLa_A485_30min_R1 5 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMT(0.144)LS(0.856)PQEEVAAGQMASSSR ;;;; 322.67 2.69E-102 1242393000 568913 712152 763706 557083 900345 759290 849297 957071 696241 715926 TRUE FALSE FALSE 695465.7341 795431.9815 1046232.63 587515.0337 810703.4905 799045.2503 667837.7578 722347.8366 835970.1824 537458.8238 1.293988866 1.479986831 1.946628436 1.093134967 1.508401118 1.486709707 1.242584042 1.344005912 1.555412518 1 19.0357947 -12.38055822 0.231675873 3.17E-14 1.497287704 0.263024637 0.217466748 97.0177665 1.904809829 47.10196839 0.385317994 4.16E-13 12.38055822 1.497287704 AMTLS(ph)PQEEVAAGQMASSSR ddPTM_HeLa_A486_30min_R1 5 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMT(0.011)LS(0.989)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR ;;;; 401.49 8.14E-175 1425031000 630122 744702 649756 267632 914553 649107 763417 825184 611196 671656 TRUE FALSE FALSE 585953.7018 685689.1014 901358.9243 623060.8214 799841.2349 569026.778 572401.992 637307.6168 664174.9614 503468.9659 1.163832811 1.361929231 1.790296891 1.237535705 1.588660452 1.130212221 1.136916137 1.265832971 1.319197421 1 18.94154333 -6.276227004 24.86969977 1.184951574 1.434251509 0.332451927 0.182137034 959.9353384 1614406.065 0.063960462 0.056631605 5.29E-07 6.276227004 0.249299936 AMTMPPVS(ph)PVGAEGPVVLR ddPTM_HeLa_A486_30min_R1 1 AMTMPPVSPVGAEGPVVLR 19 0 A4QPE4;O15020 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 AMTMPPVS(1)PVGAEGPVVLR 69.729 0.005694 34344000 98724 97258 87984 38437 110410 94953 104670 100280 75223 114490 TRUE FALSE FALSE 91803.95741 89550.92187 122053.7611 89483.2785 96561.34827 83238.66427 78480.45891 77448.4331 81743.39021 85820.9588 1.069714889 1.043462146 1.422190602 1.042673955 1.125148794 0.969910677 0.914467282 0.902441946 0.952487497 1 16.3890424 -6.214019756 1.93354957 0.932028829 1.157272288 0.458884273 0.104780081 0.306195658 2.252889237 0.042513852 0.040274357 6.11E-07 6.214019756 0.225243459 AMTTGAIAAMLSTILYSR ddPTM_HeLa_A485_30min_R1 3 AMTTGAIAAMLSTILYSR 18 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 0 ;; ;; 136.17 2.04E-07 98961000 54260.6 75304 84744 60245.1 101035 59059.3 79727 68333 62621 93705 FALSE FALSE TRUE 66330.68327 84110.14774 116094.3321 63536.13726 90975.60064 62151.55362 62692.67514 51574.22461 75188.46031 70346.06801 0.942919557 1.195662389 1.650331502 0.903193868 1.293257793 0.883511408 0.891203686 0.733150069 1.068836716 1 16.10218217 -6.270062874 24.54246905 0.89715369 1.205849061 0.311931972 0.208137438 586.1340135 1668132.23 0.072475947 0.064926235 5.37E-07 6.270062874 0.308695371 AMTTGAIAAMLSTILYSR ddPTM_HeLa_A486_30min_R1 3 AMTTGAIAAMLSTILYSR 18 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 0 ;; ;; 198.85 1.98E-22 91849000 127421.9 148296 157878 59801.7 177912 129674 171111 150700 132832.2 150993 FALSE FALSE TRUE 118490.2828 136544.4849 219012.5897 139221.3798 155596.618 113676.1403 128297.218 116388.8998 144346.202 113183.37 1.046887743 1.206400595 1.935024463 1.230051551 1.374730387 1.004353734 1.133534175 1.028321561 1.275330484 1 16.78830247 -6.249369169 23.46247603 1.092904729 1.375042314 0.256129121 0.229412588 484.079412 940968.8789 0.078225285 0.077559133 5.63E-07 6.249369169 0.282137585 AMTTGAIAAMLSTILYSRR ddPTM_HeLa_A485_30min_R1 1 AMTTGAIAAMLSTILYSRR 19 1 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 0 58.159 0.03037 1768000 1260.3 2853.8 2025.1 337.34 2763.1 1816.2 2585 4221.3 1564.4 1370.7 FALSE FALSE TRUE 1540.649387 3187.527085 2774.268761 355.76803 2487.996062 1911.293424 2032.693632 3186.019556 1878.36073 1029.009716 1.497215588 3.097664712 2.696056916 0.345738261 2.417854782 1.857410474 1.975388183 3.096199683 1.825406215 1 10.00704089 AMTVEKAS(ph)PVGDGNFR ddPTM_HeLa_A485_30min_R1 1 AMTVEKASPVGDGNFR 16 1 Q86YS7;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AMT(0.001)VEKAS(0.999)PVGDGNFR 70.114 0.0042794 513270000 196070 224740 163390 283320 305900 247000 314110 368340 224050 449780 TRUE FALSE FALSE 239685.0951 251021.388 223834.7602 298797.0542 275443.5219 259932.5381 246997.8325 278004.0375 269014.7799 337658.1236 0.709845487 0.743418773 0.662903525 0.884910012 0.815746765 0.769809816 0.73150271 0.823329925 0.79670756 1 18.36520374 -14 0.165723566 1.870924911 0.714920226 0.623337206 0.056033992 93.38853257 0.871144118 26.7136975 0.229052241 1.00E-14 14 -1.156004685 AMTVEKAS(ph)PVGDGNFR ddPTM_HeLa_A486_30min_R1 2 AMTVEKASPVGDGNFR 16 1 Q86YS7;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AMTVEKAS(1)PVGDGNFR;AMTVEKAS(1)PVGDGNFR ; 206.74 1.10E-25 839890000 1353890 1390690 982810 742360 1855400 1679460 2130000 2182800 1231760 2068200 TRUE FALSE FALSE 1258989.302 1280486.66 1363380.353 1728251.597 1622678.431 1472265.301 1597051.471 1685824.09 1338529.949 1550309.258 0.812089134 0.82595563 0.879424763 1.114778608 1.046680475 0.949659104 1.030150251 1.087411483 0.863395443 1 20.5641246 -5.069041141 5.483784546 1.015990298 0.825884226 0.597593221 0.066529584 0.137371615 7.789265855 0.017952676 0.032318991 8.53E-06 5.069041141 -0.190106072 AMVDSQQKS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 AMVDSQQKSPVK 12 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;Q03001-9;H0YAT7;Q6P0N6;Q03001-3;F6QMI7;E7ETB9;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 AMVDSQQKS(1)PVK 128.74 1.62E-05 501650000 536250 381980 233110 914410 529140 572530 978320 912230 397550 1386800 TRUE FALSE FALSE 655536.9625 426649.2382 319347.0895 964361.9029 476456.9637 602506.7855 769293.9399 688504.1622 477334.6385 1041096.282 0.629660266 0.409807667 0.306741168 0.926294637 0.45764928 0.578723405 0.738926796 0.661326117 0.458492309 1 19.98967207 -14 0.190931247 2.790916266 0.501513868 0.354615964 0.170515352 155.0259657 1.517912948 105.9720822 0.461334674 1.00E-14 14 -2.289402397 AMVDSQQKS(ph)PVKR ddPTM_HeLa_A485_30min_R1 2 AMVDSQQKSPVKR 13 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;Q03001-9;H0YAT7;Q6P0N6;Q03001-3;F6QMI7;E7ETB9;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 AMVDSQQKS(1)PVKR;AMVDSQQKS(1)PVKR ; 131.48 8.43E-06 1348690000 1158860 908160 603530 1695580 1238100 1336350 1972600 2074990 913450 2598600 TRUE FALSE FALSE 1416644.409 1014361.412 826800.862 1788205.242 1114830.417 1406319.22 1551137.895 1566095.449 1096771.036 1950816.844 0.72618012 0.519967528 0.423822905 0.916644352 0.571468521 0.720887368 0.795122259 0.802789587 0.562211178 1 20.8956469 -14 0.110220673 2.02322407 0.489660581 0.330599509 0.142114127 193.1011164 1.411929336 44.86167183 1.772842002 1.00E-14 14 -1.533563488 AMVDSQQKS(ph)PVKR ddPTM_HeLa_A486_30min_R1 3 AMVDSQQKSPVKR 13 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;Q03001-9;H0YAT7;Q6P0N6;Q03001-3;F6QMI7;E7ETB9;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 AMVDS(0.017)QQKS(0.983)PVKR;AMVDSQQKS(1)PVKR;AMVDSQQKS(1)PVKR ;; 136.48 4.22E-06 1222310000 2481990 2217700 1126260 1330260 2371420 3036210 3704020 3456280 1978840 3992710 TRUE FALSE FALSE 2308015.318 2041961.375 1562378.034 3096912.508 2073974.391 2661633.28 2777235.019 2669360.494 2150367.444 2992909.428 0.771161097 0.682266345 0.5220265 1.034749825 0.692962631 0.889313006 0.927938211 0.891894846 0.71848731 1 21.51311719 -5.257018271 24.99990981 0.86950609 0.660862825 0.43062088 0.115980896 370.8743767 2097163.82 0.030852944 0.051173651 5.53E-06 5.257018271 -0.208643266 ANALLS(ph)PPRAPSK ddPTM_HeLa_A485_30min_R1 1 ANALLSPPRAPSK 13 1 Q5D1E8 Q5D1E8 ZC3H12A Ribonuclease ZC3H12A 1 0 ANALLS(1)PPRAPSK 62.813 0.011427 307330000 136780 158590 144040 178280 191560 155470 213760 186940 173900 231160 TRUE FALSE FALSE 167206.2391 177135.721 197326.39 188018.985 172487.6138 163610.1688 168088.4297 141092.6719 208800.1349 173536.0662 0.963524429 1.020742978 1.137091524 1.083457688 0.993958303 0.942802107 0.968608045 0.813045236 1.203208875 1 17.40487601 -5.907463047 5.526206965 0.972345497 1.054684438 0.084643051 0.098716585 0.436856136 20.89085896 0.030346533 0.034559693 1.24E-06 5.907463047 0.082338941 ANALLS(ph)PPRAPSK ddPTM_HeLa_A486_30min_R1 1 ANALLSPPRAPSK 13 1 Q5D1E8 Q5D1E8 ZC3H12A Ribonuclease ZC3H12A 1 0 ANALLS(1)PPRAPSK 98.035 0.0004702 197860000 282660 345900 227710 130510 359340 308240 302280 329540 264840 343350 TRUE FALSE FALSE 262846.9937 318489.6243 315885.4103 303833.8756 314268.2265 270212.4828 226646.3468 254510.9358 287796.5444 257372.9252 1.021269015 1.237463591 1.227345145 1.180519961 1.221061719 1.049886979 0.880614566 0.988879991 1.118208313 1 17.97350077 -6.408738841 4.632822347 0.992329367 1.182930288 0.545894992 0.078358643 0.17155995 5.806569435 0.028722922 0.024965778 3.90E-07 6.408738841 0.190600921 ANAS(ph)NSPSSLR ddPTM_HeLa_A486_30min_R1 1 ANASNSPSSLR 11 0 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 ANAS(0.539)NS(0.255)PS(0.194)S(0.012)LR 72.705 0.01186 221070000 217910 210060 202160 80382 225490 288820 207390 200750 255980 251700 TRUE FALSE FALSE 202635.6343 193414.0806 280441.766 187133.3583 197206.9416 253188.3249 155498.8285 155043.6073 278168.5525 188672.6817 1.074006223 1.025130288 1.486393067 0.991841302 1.045233151 1.341944804 0.824172461 0.821759705 1.474344616 1 17.52552602 -6.760070066 24.99997188 1.015215873 1.156465623 0.07522237 0.22175002 100.6946898 1838461.479 0.087450035 0.063989429 1.74E-07 6.760070066 0.14124975 ANAS(ph)PQKPLDLK ddPTM_HeLa_A485_30min_R1 5 ANASPQKPLDLK 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK ;;;; 178.12 3.12E-12 16371930000 16719020 12655860 7885210 25487320 17863890 17509130 28732690 27354980 13502460 33677400 TRUE FALSE FALSE 20438108.32 14135852.74 10802277.31 26879627.75 16085298.39 18425880.97 22593716.06 20646128.26 16212279.87 25282243.97 0.808397718 0.55912176 0.427267347 1.063182042 0.636229063 0.728807182 0.893659443 0.816625624 0.641251619 1 24.59162118 -13.99999927 0.070102616 1.885721225 0.411287109 0.191649706 0.169239021 510.6525211 2.571652001 73.81738581 9.150497893 1.00E-14 13.99999927 -1.474434116 ANAS(ph)PQKPLDLK ddPTM_HeLa_A486_30min_R1 6 ANASPQKPLDLK 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK;ANAS(1)PQKPLDLK ;;;;; 158.45 9.62E-09 10086000000 11663420 11031090 4504400 6292860 9794340 13692830 17537110 16288390 8136200 18339450 TRUE FALSE FALSE 10845874.49 10156946.25 6248624.312 14650096.1 8565842.549 12003547.85 13149139.59 12579879.17 8841452.367 13747132.35 0.788955414 0.73884109 0.454540202 1.06568379 0.623100319 0.873167403 0.956500545 0.915091151 0.64314885 1 23.71262737 -5.26265044 24.99982344 0.85824731 0.668585133 0.268924397 0.155895121 157.5479968 3252279.982 0.042310232 0.066897466 5.46E-06 5.26265044 -0.189662177 ANASNS(ph)PSSLR ddPTM_HeLa_A486_30min_R1 1 ANASNSPSSLR 11 0 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 ANAS(0.038)NS(0.843)PS(0.106)S(0.013)LR 148.69 7.38E-07 263720000 186240 173980 177720 72496 194150 252440 190660 193060 209640 225510 TRUE FALSE FALSE 173185.5377 160193.1912 246537.9435 168774.3517 169797.8966 221296.5194 142954.8514 149104.4525 227811.764 169040.8282 1.024518985 0.947659763 1.458452057 0.998423597 1.004478613 1.309130592 0.845682389 0.882061772 1.347673023 1 17.36701221 -6.769718428 24.99872751 1.009026193 1.119863864 0.064731292 0.19360647 573.8200174 1732641.445 0.080040002 0.054978618 1.70E-07 6.769718428 0.110837671 ANDEANQS(ph)DTSVSLSEPK ddPTM_HeLa_A486_30min_R1 1 ANDEANQSDTSVSLSEPK 18 0 O95684;O95684-2;A0A087WV25 O95684 FGFR1OP FGFR1 oncogene partner 1 0 ANDEANQS(0.841)DT(0.079)S(0.079)VSLSEPK 85.937 0.00048066 0 71050 78614 71333 27465 103730 83640 90607 84657 71549 89030 TRUE FALSE FALSE 66069.7619 72384.34033 98955.04796 63939.908 90719.21616 73321.34719 67936.17026 65382.44915 77750.92493 66736.30851 0.990012234 1.084632068 1.48277677 0.958097765 1.359368209 1.098672504 1.017979145 0.979713302 1.165046834 1 16.02618427 -6.516373966 24.16374494 1.041755872 1.180410421 0.143561862 0.154808916 376.1237116 1397227.407 0.056315433 0.045319418 3.05E-07 6.516373966 0.138654549 ANEAGGQVGPEAPRPPET(ph)SPEMR ddPTM_HeLa_A485_30min_R1 4 ANEAGGQVGPEAPRPPETSPEMR 23 1 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ANEAGGQVGPEAPRPPET(0.543)S(0.457)PEMR;ANEAGGQVGPEAPRPPET(0.588)S(0.412)PEMR;ANEAGGQVGPEAPRPPET(0.565)S(0.435)PEMR;ANEAGGQVGPEAPRPPET(0.5)S(0.5)PEMR ;;; 144.89 2.45E-09 4055600000 457307 563900 541510 537050 641510 561700 718180 777390 532085 824410 TRUE FALSE FALSE 559033.3645 629843.1997 741837.0831 566387.6816 577639.0119 591109.7434 564734.976 586733.8836 638869.5789 618899.7591 0.903269643 1.017682089 1.198638507 0.915152532 0.9333321 0.955097711 0.912482139 0.948027326 1.032266647 1 19.23934623 ANEAGGQVGPEAPRPPET(ph)SPEMR ddPTM_HeLa_A486_30min_R1 2 ANEAGGQVGPEAPRPPETSPEMR 23 1 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ANEAGGQVGPEAPRPPET(0.571)S(0.429)PEMR;ANEAGGQVGPEAPRPPET(0.87)S(0.13)PEMR ; 120.57 4.74E-05 3896700000 352660 329140 313480 113343 429540 345820 375490 384540 339400 411300 TRUE FALSE FALSE 327940.3551 303057.7477 434867.8513 263868.232 375663.0879 303156.2444 281538.4305 296988.6364 368819.4653 308307.8029 1.063678415 0.982971384 1.410499012 0.855859727 1.218467662 0.983290859 0.913173224 0.96328615 1.196270292 1 18.23401188 -6.333189733 24.99995455 1.002782423 1.102433479 0.087126879 0.152431991 389.2657351 135629.5889 0.052077523 0.045928064 4.64E-07 6.333189733 0.099651056 ANEAGGQVGPEAPRPPETS(ph)PEMR ddPTM_HeLa_A485_30min_R1 3 ANEAGGQVGPEAPRPPETSPEMR 23 1 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ANEAGGQVGPEAPRPPET(0.251)S(0.749)PEMR;ANEAGGQVGPEAPRPPET(0.216)S(0.784)PEMR;ANEAGGQVGPEAPRPPET(0.218)S(0.782)PEMR ;; 156.92 2.00E-10 3352470000 507650 586620 590900 568930 690720 596140 723260 793370 569050 784040 TRUE FALSE FALSE 620574.9911 655220.1061 809498.4994 600009.2053 621949.4915 627352.9686 568729.5925 598794.7635 683253.1154 588593.2572 1.054335882 1.113196759 1.375310521 1.019395309 1.056671112 1.065851436 0.966252307 1.017332014 1.160823892 1 19.16691149 ANEAGGQVGPEAPRPPETS(ph)PEMR ddPTM_HeLa_A486_30min_R1 1 ANEAGGQVGPEAPRPPETSPEMR 23 1 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ANEAGGQVGPEAPRPPET(0.3)S(0.7)PEMR 110.33 0.00026296 488000000 404830 425940 382140 128690 503720 399190 431750 457430 407960 486240 TRUE FALSE FALSE 376453.5075 392186.9632 530114.8421 299596.8236 440538.7406 349941.9965 323721.5834 353283.1746 443322.3013 364482.3391 1.032844303 1.076010882 1.454432177 0.821978986 1.208669648 0.960106866 0.888168091 0.96927378 1.216306673 1 18.47548939 -5.282533889 24.96472382 1.00915546 1.176587401 0.214044544 0.156347738 1265.620992 1497821.883 0.043652434 0.064819081 5.22E-06 5.282533889 0.167431941 ANES(ph)SPKPVGPPPER ddPTM_HeLa_A486_30min_R1 1 ANESSPKPVGPPPER 15 1 A6PVM9;Q9BQI0-3;Q9BQI0;Q9BQI0-2 A6PVM9 AIF1L Allograft inflammatory factor 1-like 1 0 ANES(0.569)S(0.431)PKPVGPPPER 44.998 0.032773 312060000 298270 347560 271660 109620 330210 245040 289450 284780 284940 288940 TRUE FALSE FALSE 277362.8133 320018.0798 376854.0273 255200.8999 288791.9827 214809.4562 217026.5485 219941.8107 309638.8286 216587.5433 1.280603718 1.477546099 1.739961687 1.178280597 1.333373001 0.991790446 1.002026918 1.01548689 1.429624363 1 17.72459075 -5.696705388 1.851279469 1.09538486 1.485636599 0.446090634 0.179630141 0.306864285 2.164856189 0.061802061 0.085543905 2.01E-06 5.696705388 0.390251739 ANESS(ph)PKPVGPPPER ddPTM_HeLa_A486_30min_R1 1 ANESSPKPVGPPPER 15 1 A6PVM9;Q9BQI0-3;Q9BQI0;Q9BQI0-2 A6PVM9 AIF1L Allograft inflammatory factor 1-like 1 0 ANES(0.399)S(0.601)PKPVGPPPER 72.772 0.0040942 492960000 326630 377990 358630 82870 417630 246650 269100 271570 337250 247060 TRUE FALSE FALSE 303734.9237 348036.6958 497501.1404 192925.548 365246.9512 216220.8308 201768.3338 209739.4393 366483.1015 185194.5679 1.64008549 1.879302939 2.686370049 1.041745177 1.97223361 1.167533331 1.089493801 1.132535591 1.978908484 1 17.49868226 -5.278993696 24.98362866 1.354547764 2.049657928 0.388151641 0.418521477 837.6543145 1192163.158 0.116993765 0.173965755 5.26E-06 5.278993696 0.695110163 ANGTTVHVGIHPSK ddPTM_HeLa_A485_30min_R1 2 ANGTTVHVGIHPSK 14 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 0 ; ; 180.74 1.04E-10 153351000 113366 193223 184840 59980 230090 159077 209140 221670 182308 158174 FALSE FALSE TRUE 138583.8756 215818.749 253220.0078 63256.55552 207181.4317 167406.0257 164455.5305 167305.0849 218895.5434 118744.1328 1.167079774 1.817510844 2.132484376 0.532713104 1.744771947 1.40980461 1.384957106 1.40895454 1.843421972 1 16.85749671 ANGTTVHVGIHPSK ddPTM_HeLa_A486_30min_R1 2 ANGTTVHVGIHPSK 14 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 0 ; ; 196.18 1.80E-15 89647000 112228 122407 98658 4579 142387 87337 99762 96247 102024 56145 FALSE FALSE TRUE 104361.3967 112707.0235 136861.0198 10660.14341 124527.4948 76562.24892 74800.49243 74333.65916 110867.5225 42085.92656 2.479721971 2.678021675 3.251942655 0.25329473 2.958886852 1.819188864 1.777327923 1.766235539 2.634313452 1 15.36105026 -1.000000016 0.060214149 1.00E-10 6.410600754 0.17062079 0.800621914 642.4558211 2.896006409 62.314301 361.1138894 0.099999996 1.000000016 6.410600754 ANK(ac)ITITNDK ddPTM_HeLa_A485_30min_R1 2 ANKITITNDK 10 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 0 1 ; ANK(1)ITITNDK;ANK(1)ITITNDK 195.51 1.82E-13 96011000 87637 50573 52019 84518 79377 65903 84230 72939 58978 127400 FALSE TRUE FALSE 107131.5483 56487.07242 71262.99279 89135.00433 71473.94717 69353.57917 66233.5724 55050.59589 70814.34362 95641.52462 1.12013635 0.590612421 0.745105153 0.931969714 0.74731083 0.725140878 0.692518994 0.57559304 0.740414207 1 16.54534951 -5.9823582 24.39767621 0.718975814 0.823654346 0.064675335 0.161506378 481.19108 665457.1483 0.048631532 0.055130916 1.04E-06 5.9823582 0.104678532 ANK(ac)ITITNDK ddPTM_HeLa_A486_30min_R1 2 ANKITITNDK 10 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 0 1 ; ANK(1)ITITNDK;ANK(1)ITITNDK 276.61 2.90E-45 104064000 121777 145665 85972 50390 135668 160044 156501 153186 126089 174261 FALSE TRUE FALSE 113241.0612 134121.9749 119262.6608 117310.4666 118651.2544 140299.3985 117342.7945 118308.8918 137018.496 130624.9114 0.866917803 1.026771797 0.913016205 0.898071167 0.908335578 1.07406311 0.898318654 0.905714619 1.048946136 1 16.99507053 ANK(ac)ITITNDKGR ddPTM_HeLa_A485_30min_R1 2 ANKITITNDKGR 12 2 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 0 1 ; ANK(1)ITITNDKGR;ANK(1)ITITNDKGR 236.28 1.92E-28 122500000 92492 145843 110621 69782 152221 172293 201465 272055 116329 120612 FALSE TRUE FALSE 113066.5263 162898.0702 151544.3112 73594.01396 137065.3428 181313.9951 158420.3569 205333.0847 139675.1633 90545.6481 1.248724027 1.799071227 1.673678574 0.812783557 1.51377063 2.00245952 1.749618676 2.267730023 1.542593887 1 16.46635768 -6.015638626 24.66961396 1.790043672 1.400129817 0.119348972 0.395249521 1048.120801 1653389.696 0.126491476 0.130366719 9.65E-07 6.015638626 -0.389913855 ANK(ac)ITITNDKGR ddPTM_HeLa_A486_30min_R1 2 ANKITITNDKGR 12 2 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 0 1 ; ANK(1)ITITNDKGR;ANK(1)ITITNDKGR 184.98 1.00E-08 86333000 77419 76905 56746 26840 108543 71478 86521 97410 58102 97786 FALSE TRUE FALSE 71992.32789 70810.76772 78719.57091 62484.87642 94928.52482 62659.7711 64872.53067 75231.86945 63138.32814 73299.74912 0.98216336 0.966043794 1.073940523 0.852456893 1.295072984 0.854842913 0.885030733 1.026359167 0.861371681 1 16.16152064 ANKT(ph)PLRPLDPTR ddPTM_HeLa_A485_30min_R1 3 ANKTPLRPLDPTR 13 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 ANKT(1)PLRPLDPTR;ANKT(1)PLRPLDPTR;ANKT(0.998)PLRPLDPT(0.002)R ;; 97.235 0.0010129 670730000 981680 877100 705860 1174100 1301610 1106650 1411920 1492980 848980 1465820 TRUE FALSE FALSE 1200051.329 979669.2152 966986.9873 1238238.11 1172017.138 1164592.483 1110251.758 1126824.314 1019362.499 1100418.05 1.090541298 0.890270034 0.878745116 1.125243365 1.065065352 1.058318229 1.008936338 1.023996574 0.926341129 1 20.06962028 -3.931231268 20.04482601 1.002113641 3.204292587 0.119034987 0.075021958 789.6762277 250622.3659 0.019408956 6843.205984 0.000117157 3.931231268 2.202178945 ANKT(ph)PLRPLDPTR ddPTM_HeLa_A486_30min_R1 3 ANKTPLRPLDPTR 13 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 ANKT(1)PLRPLDPTR;ANKT(1)PLRPLDPTR;ANKT(0.994)PLRPLDPT(0.006)R ;; 84.859 0.0025024 829683000 961240 974280 630457 457730 1074440 1071250 1261860 1226320 791366 1235420 TRUE FALSE FALSE 893862.0398 897074.5045 874586.8346 1065618.572 939673.7164 939090.0667 946129.2814 947113.7064 859962.2421 926062.7908 0.965228329 0.968697278 0.944414184 1.150697969 1.014697627 1.014067379 1.021668607 1.022731629 0.928621958 1 19.82075049 -2.039075929 12.00939449 1.006375732 0.957077124 0 0.058734162 0 0 0.013720904 0 0.009139534 2.039075929 -0.049298607 ANLPQSFQVDTSK ddPTM_HeLa_A485_30min_R1 1 ANLPQSFQVDTSK 13 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 172.76 5.80E-07 42667000 34899 41153 36436 48745 56389 51015 60302 64246 44775 69401 FALSE FALSE TRUE 42662.16215 45965.48537 49915.19263 51407.81592 50774.71317 53686.06652 47417.98508 48489.56777 53760.9318 52100.60793 0.818841926 0.882244703 0.958053939 0.986702804 0.974551261 1.030430712 0.910123451 0.930691017 1.031867649 1 15.66901259 -4.587981922 1.986183114 0.977009868 0.813145704 0.681290852 0.036318644 0.250916958 1.661702188 0.010292308 0.059155414 2.58E-05 4.587981922 -0.163864164 ANLQQAIVT(ph)PLKPVDNTYYK ddPTM_HeLa_A485_30min_R1 2 ANLQQAIVTPLKPVDNTYYK 20 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 ANLQQAIVT(1)PLKPVDNTYYK;ANLQQAIVT(1)PLKPVDNTYYK ; 253.29 1.94E-58 2155700000 2473400 1863740 1310060 2955000 2957300 2546100 3314100 3203100 1943620 3879800 TRUE FALSE FALSE 3023599.297 2081688.181 1794705.71 3116424.168 2662860.828 2679409.859 2606015.461 2417534.703 2333686.706 2912637.262 1.038096757 0.71470904 0.616178929 1.069966455 0.914243893 0.919925695 0.89472709 0.830015716 0.801228061 1 21.47389461 -5.263176821 24.99589904 0.910384707 0.782166332 0.186136155 0.122403178 269.7825039 3881276.845 0.034610863 0.054505029 5.46E-06 5.263176821 -0.128218376 ANLQQAIVT(ph)PLKPVDNTYYK ddPTM_HeLa_A486_30min_R1 1 ANLQQAIVTPLKPVDNTYYK 20 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 ANLQQAIVT(1)PLKPVDNTYYK 242.83 3.42E-46 1473600000 1790800 1589500 926070 793160 1705600 2032200 2324800 2168500 1380700 2247100 TRUE FALSE FALSE 1665274.168 1463542.231 1284669.105 1846516.564 1491667.744 1781487.826 1743110.451 1674779.888 1500380.188 1684411.534 0.988638545 0.868874501 0.762681256 1.096238376 0.885572032 1.05763217 1.034848323 0.994281893 0.890744428 1 20.68381323 -5.263682471 24.99583811 0.993761917 0.872945745 0.323102971 0.080115814 233.9965073 2607547.18 0.022021389 0.034533712 5.45E-06 5.263682471 -0.120816172 ANNS(ph)QEPS(ph)PQLASSVASTR ddPTM_HeLa_A486_30min_R1 1 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 2 0 ANNS(1)QEPS(1)PQLASSVASTR 156.51 4.38E-13 0 52602 66315 57269 27148 80025 66762 72448 79636 53731 57687 TRUE FALSE FALSE 48914.87144 61059.95788 79445.09052 63201.91598 69987.5183 58525.58323 54320.74412 61504.62124 58388.44634 43241.79972 1.131194163 1.412058663 1.837229048 1.461593097 1.618515389 1.353449292 1.256209142 1.422341846 1.350277896 1 15.40013895 -6.456200392 6.075133363 1.293729803 1.504595243 0.235691554 0.195186195 0.381553739 26.87545733 0.071443301 0.062182751 3.50E-07 6.456200392 0.21086544 ANNSQEPS(ph)PQLASSVASTR ddPTM_HeLa_A485_30min_R1 2 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 ANNSQEPS(1)PQLASSVASTR;ANNSQEPS(1)PQLASSVASTR ; 309.77 1.86E-89 410180000 361990 417460 432200 403800 588200 382950 490390 501730 408380 544560 TRUE FALSE FALSE 442513.4266 466278.3156 592088.7653 425858.5715 529636.7427 403000.6698 385614.1704 378679.9308 490338.1201 408811.2139 1.082439551 1.140571246 1.448318307 1.041699829 1.295553362 0.98578673 0.943257321 0.926295361 1.199424339 1 18.64107525 -6.275749557 24.17974526 1.002115224 1.203129792 0.359159308 0.127127402 566.6406922 957442.8591 0.044030136 0.039022844 5.30E-07 6.275749557 0.201014568 ANNSQEPS(ph)PQLASSVASTR ddPTM_HeLa_A486_30min_R1 2 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 ANNSQEPS(1)PQLASSVASTR;ANNSQEPS(1)PQLASSVASTR ; 223.51 2.91E-36 0 222960 275265 217528 88758 312990 267168 280548 302780 206441 249696 TRUE FALSE FALSE 207331.6554 253451.9989 301760.6672 206633.1096 273731.8757 234207.5285 210351.9231 233843.6036 224335.4721 187170.4964 1.107715476 1.354123667 1.61222347 1.103983339 1.462473419 1.251305805 1.123851927 1.249361455 1.198562148 1 17.51399352 -6.525993981 7.658264293 1.166607935 1.335345021 0.23798495 0.153618433 0.198892176 88.79166579 0.056411053 0.045374072 2.98E-07 6.525993981 0.168737086 ANPFGGASHAK ddPTM_HeLa_A485_30min_R1 1 ANPFGGASHAK 11 0 P62266;D6RD47;D6RDJ2;D6RIX0;D6R9I7 P62266 RPS23 40S ribosomal protein S23 0 0 129.34 0.00056387 17888000 38760 58449 58412 41652 61526 57981 59748 74199 57239 59110 FALSE FALSE TRUE 47382.02828 65284.10211 80021.02953 43927.34329 55400.25541 61016.7955 46982.3517 56001.57891 68726.34227 44374.96484 1.067764864 1.471192199 1.803292235 0.989912746 1.248457449 1.375027467 1.05875806 1.262008412 1.54876387 1 15.43745836 -5.281819702 24.99446479 1.224709835 1.449794129 0.177627062 0.231104084 1442.550168 1769142.983 0.065309579 0.096997119 5.23E-06 5.281819702 0.225084294 ANQIS(ph)PSNSSLKNPQAGVPPFSSLK ddPTM_HeLa_A485_30min_R1 2 ANQISPSNSSLKNPQAGVPPFSSLK 25 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 ANQIS(0.68)PS(0.084)NS(0.118)S(0.118)LKNPQAGVPPFSSLK;ANQIS(0.687)PS(0.096)NS(0.109)S(0.109)LKNPQAGVPPFSSLK ; 158.57 2.15E-10 687710000 478228 523203 378821 514625 652450 613017 804279 864151 502365 768906 TRUE FALSE FALSE 584608.1687 584387.0396 518962.652 542737.6607 587489.7871 645113.6222 632438.2213 652216.6123 603185.0475 577231.8849 1.012778719 1.012395633 0.899054029 0.940241998 1.017770852 1.117598731 1.09563979 1.129903994 1.044961416 1 19.13879147 -6.029737618 4.278017003 1.086197073 0.965300003 0.55662488 0.046590616 0.151375975 6.364833323 0.015789345 0.016612553 9.34E-07 6.029737618 -0.12089707 ANQIS(ph)PSNSSLKNPQAGVPPFSSLK ddPTM_HeLa_A486_30min_R1 1 ANQISPSNSSLKNPQAGVPPFSSLK 25 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 ANQIS(0.939)PS(0.02)NS(0.02)S(0.02)LKNPQAGVPPFSSLK 147.55 1.97E-09 352970000 878300 850530 472870 305840 829380 836210 995160 957980 645130 1010900 TRUE FALSE FALSE 816735.7055 783130.9052 655977.9279 712010.9763 725351.4267 733046.9122 746160.4423 739868.8666 701050.3878 757764.0601 1.077823228 1.033475915 0.865675693 0.939620937 0.957225956 0.967381472 0.984687031 0.976384214 0.925156556 1 19.53138919 -4.538712903 24.42871856 0.952428201 1.066736427 0.58725966 0.035610253 101.8622931 157151.5307 0.009244935 0.024479541 2.89E-05 4.538712903 0.114308226 ANS(ph)DTDLVTSESR ddPTM_HeLa_A485_30min_R1 2 ANSDTDLVTSESR 13 0 A0A2R8Y6F3;Q9P2P5;C9JHL2 A0A2R8Y6F3 HECW2 E3 ubiquitin-protein ligase HECW2 1 0 ANS(0.919)DT(0.081)DLVTSESR;ANS(0.996)DT(0.004)DLVTSESR ; 281.92 1.12E-67 432260000 371770 433390 385550 378420 539480 486530 515940 531070 410570 519870 TRUE FALSE FALSE 454468.9539 484071.1905 528180.9891 399092.1264 485767.477 512003.9585 405705.2042 400824.2498 492967.633 390275.9765 1.164480986 1.240330483 1.353352553 1.022589527 1.24467686 1.311902319 1.039534147 1.027027729 1.263125744 1 18.57413513 -8.352281783 0.225027368 0.941860791 1.262363451 0.218591827 0.11215098 7.007610719 0.972271609 0.721638843 0.335228719 4.44E-09 8.352281783 0.32050266 ANS(ph)DTDLVTSESR ddPTM_HeLa_A486_30min_R1 2 ANSDTDLVTSESR 13 0 A0A2R8Y6F3;Q9P2P5;C9JHL2 A0A2R8Y6F3 HECW2 E3 ubiquitin-protein ligase HECW2 1 0 ANS(0.927)DT(0.073)DLVTSESR;ANS(0.994)DT(0.006)DLVTSESR ; 333.13 6.10E-81 822390000 542020 560590 454780 197462 643830 540870 635140 641450 460240 637760 TRUE FALSE FALSE 504027.197 516166.8068 630882.9954 459701.5152 563074.8379 474142.9586 476221.2542 495405.8378 500133.9738 478060.7449 1.054316219 1.079709665 1.319671197 0.96159645 1.177831152 0.991804836 0.996152182 1.036282194 1.046172435 1 18.86683442 -6.27397836 24.71524096 1.015229328 1.11890841 0.262414453 0.087623406 955.3073631 1882974.983 0.030208087 0.026816298 5.32E-07 6.27397836 0.103679082 ANS(ph)FVGTAQYVSPELLTEK ddPTM_HeLa_A485_30min_R1 4 ANSFVGTAQYVSPELLTEK 19 0 E9PER6;Q6A1A2;O15530-4;O15530-5;O15530-2;O15530 E9PER6 PDPK1;PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 1 0 ANS(1)FVGTAQYVSPELLTEK;ANS(1)FVGTAQYVSPELLTEK;ANS(1)FVGTAQYVSPELLTEK;ANS(0.985)FVGT(0.015)AQYVSPELLTEK ;;; 363.55 9.82E-130 2425234000 888360 704857 537573 1224620 1084800 929552 1523910 1481310 778187 1725940 TRUE FALSE FALSE 1085972.617 787283.8947 736443.623 1291517.89 976793.503 978221.9054 1198314.179 1118016.4 934361.9929 1295694.922 0.838139132 0.607615174 0.568377332 0.996776223 0.753876153 0.754978575 0.924842846 0.862870095 0.721128081 1 20.30529464 -10.30990684 0.036774696 1.906665883 3.04E-09 0.249475908 0.122721749 579.4366307 3.664646035 119.7872332 73.72575921 4.90E-11 10.30990684 -1.90666588 ANS(ph)FVGTAQYVSPELLTEK ddPTM_HeLa_A486_30min_R1 6 ANSFVGTAQYVSPELLTEK 19 0 E9PER6;Q6A1A2;O15530-4;O15530-5;O15530-2;O15530 E9PER6 PDPK1;PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 1 0 ANS(1)FVGTAQYVSPELLTEK;ANS(1)FVGTAQYVSPELLTEK;ANS(1)FVGTAQYVSPELLTEK;ANS(0.986)FVGT(0.014)AQYVSPELLTEK;ANS(0.897)FVGT(0.103)AQYVSPELLTEK;ANS(0.969)FVGT(0.031)AQYVSPELLTEK ;;;;; 348.88 1.44E-115 1995839000 813414 869333 461495 419882 829885 945770 1199700 1136590 668733 1207750 TRUE FALSE FALSE 756397.8791 800443.887 640198.2233 977506.5157 725793.0849 829090.5133 899522.3709 877813.2686 726699.3149 905321.5389 0.835501915 0.884154251 0.707150107 1.079734076 0.801696473 0.915796739 0.993594355 0.969614917 0.802697477 1 19.78807075 -5.249461565 24.98799534 0.932087696 0.816457323 0.294120239 0.09083262 1050.922901 2192420.168 0.023896663 0.040980344 5.63E-06 5.249461565 -0.115630373 ANS(ph)MEGLMPR ddPTM_HeLa_A485_30min_R1 3 ANSMEGLMPR 10 0 O43306-2;O43306 O43306-2 ADCY6 Adenylate cyclase type 6 1 0 ANS(1)MEGLMPR;ANS(1)MEGLMPR;ANS(1)MEGLMPR ;; 115.57 0.00048194 181171000 130720.8 113404.2 88127 148665 127971.5 102820.7 153120 140346.4 106307.7 225684 TRUE FALSE FALSE 159799.191 126665.8347 120728.8446 156786.1925 115230.2081 108204.2329 120404.6611 105926.2253 127642.6803 169425.1322 0.943184691 0.747621283 0.712579315 0.925401034 0.680124646 0.638655148 0.710665883 0.625209637 0.75338693 1 17.37028837 -4.262501328 5.570344597 0.739321348 0.950197644 0.185453909 0.114444125 0.219012963 27.359405 0.027753343 0.176418602 5.46E-05 4.262501328 0.210876296 ANS(ph)MEGLMPR ddPTM_HeLa_A486_30min_R1 2 ANSMEGLMPR 10 0 O43306-2;O43306 O43306-2 ADCY6 Adenylate cyclase type 6 1 0 ANS(1)MEGLMPR;ANS(1)MEGLMPR ; 107.53 0.00086756 123676000 139497 150202 116825 43547 188824 174968 151843 127444 158828 207590 TRUE FALSE FALSE 129718.9807 138299.4465 162062.7687 101379.6167 165139.9332 153382.2271 113850.2754 98427.78328 172595.3389 155608.1128 0.833626077 0.888767584 1.041480201 0.651505985 1.061255292 0.985695568 0.731647427 0.632536322 1.109166712 1 17.24755775 -8.795281359 13.058927 1 0.876468585 0.045210088 0.161407852 0 0 0.153451155 0.037217372 1.60E-09 8.795281359 -0.123531415 ANS(ph)PEKPPEAGAAHKPR ddPTM_HeLa_A485_30min_R1 2 ANSPEKPPEAGAAHKPR 17 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 ANS(1)PEKPPEAGAAHKPR;ANS(1)PEKPPEAGAAHKPR ; 119.87 2.13E-05 5019620000 699350 414050 279594 1200480 644870 636730 1198630 1075450 440260 1568250 TRUE FALSE FALSE 854917.9948 462469.5457 383027.4555 1266059.183 580664.4785 670068.1982 942532.9086 811694.2013 528616.1437 1177314.137 0.726159627 0.392817457 0.325340063 1.075379241 0.493211166 0.569149879 0.800578944 0.689445727 0.449001781 1 20.16706789 -14 0.282916934 3.816828238 0.591818309 0.2223582 0.211733444 369.0441304 3.525839944 612.3273878 0.241128902 1.00E-14 14 -3.225009929 ANS(ph)PEKPPEAGAAHKPR ddPTM_HeLa_A486_30min_R1 1 ANSPEKPPEAGAAHKPR 17 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 ANS(1)PEKPPEAGAAHKPR 128.88 6.57E-06 5634300000 1212500 1061100 379400 864610 900870 1485300 2065300 1780900 882620 2248500 TRUE FALSE FALSE 1127510.011 977014.5715 526313.8407 2012855.775 787874.4843 1302058.787 1548540.095 1375427.947 959126.2123 1685460.965 0.6689624 0.579672026 0.312267001 1.194246451 0.467453415 0.772523846 0.918763548 0.816054466 0.569058692 1 20.68471178 -4.107082843 0.085865928 1.19573569 5.28E-17 0.152185967 0.230914221 159.6731961 2.091784145 7.297517524 26.09172918 7.81E-05 4.107082843 -1.19573569 ANS(ph)PSLFGTEGKPK ddPTM_HeLa_A485_30min_R1 3 ANSPSLFGTEGKPK 14 1 Q5JPT2;Q96B97-2;Q96B97;Q96B97-3 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 ANS(0.947)PS(0.053)LFGTEGKPK;ANS(0.837)PS(0.162)LFGTEGKPK;ANS(0.995)PS(0.005)LFGTEGKPK ;; 151.41 2.44E-08 3987500000 2108280 1531360 1035150 3106910 2181690 2173960 3584300 3386740 1604650 4157610 TRUE FALSE FALSE 2577259.613 1710439.231 1418095.061 3276632.626 1964473.283 2287785.184 2818485.024 2556136.705 1926688.536 3121194.342 0.825728657 0.548007924 0.454343724 1.049800899 0.629397938 0.732983894 0.903014909 0.818961085 0.617292076 1 21.57366676 -14 0.089393621 1.815747314 0.519624131 0.183370714 0.168168951 364.7080555 2.263821281 57.67353987 4.106290887 1.00E-14 14 -1.296123183 ANS(ph)PSLFGTEGKPK ddPTM_HeLa_A486_30min_R1 3 ANSPSLFGTEGKPK 14 1 Q5JPT2;Q96B97-2;Q96B97;Q96B97-3 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 ANS(0.996)PS(0.004)LFGTEGKPK;ANS(0.841)PS(0.159)LFGTEGKPK;ANS(0.955)PS(0.045)LFGTEGKPK ;; 167.99 2.39E-12 4451040000 3782730 4081600 1794010 2219000 3841610 5242900 6288000 5890600 3314960 6892100 TRUE FALSE FALSE 3517580.161 3758159.151 2488698.717 5165944.142 3359759.452 4596084.304 4714675.892 4549438.971 3602303.402 5166273.3 0.680873805 0.727441026 0.481720299 0.999936287 0.650325536 0.889632437 0.912587395 0.88060362 0.6972731 1 22.30069253 -5.262938124 24.99999352 0.851009335 0.639754646 0.428264575 0.121983718 134.4061116 2241989.689 0.032683891 0.051536651 5.46E-06 5.262938124 -0.211254689 ANS(ph)TSDSVFTETPSPVLK ddPTM_HeLa_A485_30min_R1 4 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANS(0.782)T(0.178)S(0.04)DSVFTETPSPVLK;ANS(0.987)T(0.013)SDSVFTETPSPVLK;ANS(0.888)T(0.056)S(0.056)DSVFTETPSPVLK;ANS(0.984)T(0.016)SDSVFTETPSPVLK ;;; 286.69 9.08E-70 480870000 587078 409219 292557 494376 539163 450000 705184 616541 375715 627827 TRUE FALSE FALSE 717671.4757 457073.6023 400786.0086 521382.5091 485482.0386 473561.3042 554515.6776 465333.3531 451117.5542 471321.2832 1.522679966 0.969770767 0.850345662 1.106214652 1.030044804 1.004752641 1.176513129 0.987295439 0.95713385 1 18.8463513 -4.258516169 24.97185375 1.012543093 1.522680155 0.777166288 0.082480289 130.0713726 1111090.785 0.021309053 0.145106863 5.51E-05 4.258516169 0.510137062 ANS(ph)TSDSVFTETPSPVLK ddPTM_HeLa_A486_30min_R1 2 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANS(0.981)T(0.019)SDSVFTETPSPVLK;ANS(0.98)T(0.02)SDSVFTETPSPVLK ; 357.38 1.39E-115 271514000 180763 223018 143508 104559 234367 255586 336863 283793 147989 206108 TRUE FALSE FALSE 168092.4472 205345.2415 199078.1409 243418.6361 204970.5055 224054.3979 252576.3144 219179.5291 160816.8057 154497.2153 1.087996615 1.32911937 1.288554881 1.575553551 1.326693851 1.450216417 1.634827618 1.418663299 1.040904235 1 17.23722131 -7.777222653 7.434207161 1.015691994 1.39821613 0.508447863 0.144728459 0.134036461 35.39354574 0.131877917 0.038092708 1.67E-08 7.777222653 0.382524137 ANSPS(ph)LFGTEGKPK ddPTM_HeLa_A486_30min_R1 1 ANSPSLFGTEGKPK 14 1 Q5JPT2;Q96B97-2;Q96B97;Q96B97-3 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 ANS(0.374)PS(0.622)LFGT(0.004)EGKPK 77.027 0.0032043 1164700000 872880 866930 335930 493580 789670 1202100 1312900 1327700 682810 1616600 TRUE FALSE FALSE 811695.6196 798231.3095 466011.0925 1149079.184 690622.2252 1053797.124 984398.5336 1025411.693 741996.5206 1211792.838 0.669830349 0.658719283 0.384563333 0.948247216 0.569917732 0.869618215 0.812348863 0.846193889 0.612313011 1 20.20871165 -5.268273921 24.99963212 0.794749806 0.579805817 0.356747326 0.145098127 612.270759 2239585.889 0.038861917 0.059104073 5.39E-06 5.268273921 -0.214943989 ANSTQSRLS(ph)K ddPTM_HeLa_A485_30min_R1 2 ANSTQSRLSK 10 1 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 ANSTQS(0.01)RLS(0.99)K;ANSTQS(0.001)RLS(0.999)K ; 62.042 0.012642 237310000 141410 181888 132547 203369 180041 204876 262627 351610 151364 285700 TRUE FALSE FALSE 172866.1666 203158.2194 181581.651 214478.5335 162115.4859 215602.9906 206514.596 265377.0962 181741.3664 214480.2479 0.805977093 0.947211789 0.846612463 0.999992007 0.755852753 1.005234713 0.962860674 1.237303196 0.847357126 1 17.71048527 -6.452123096 11.24316176 1.024887318 0.880992089 0.279902856 0.110507727 1.063423618 166.8011649 0.036704896 0.032350043 3.53E-07 6.452123096 -0.143895228 ANSTQSRLS(ph)K ddPTM_HeLa_A486_30min_R1 1 ANSTQSRLSK 10 1 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 ANSTQS(0.001)RLS(0.999)K 58.752 0.015738 101650000 135310 111640 79627 72033 129740 155740 174730 152460 111850 197250 TRUE FALSE FALSE 125825.4677 102793.2398 110460.7069 167696.4643 113466.7994 136526.3822 131010.7059 117748.1862 121545.2481 147857.3161 0.850992504 0.695219165 0.747076369 1.134177657 0.767407406 0.923365754 0.886061707 0.796363611 0.822044193 1 17.17384611 -12.73433442 0.018330979 1.979456021 1.66E-06 0.116234802 0.116459199 7812.648272 13.41652446 903.5231135 577.6349358 1.84E-13 12.73433442 -1.979454361 ANSTSDSVFTETPS(ph)PVLK ddPTM_HeLa_A485_30min_R1 1 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANSTSDSVFTET(0.407)PS(0.592)PVLK 212.79 6.23E-26 57832000 75254 71635 70687 78145 103120 82531 112390 110150 57767 108520 TRUE FALSE FALSE 91993.99268 80012.09011 96837.06283 82413.86348 92853.01072 86852.19554 88376.95836 83135.53979 69360.30703 81467.96116 1.129204553 0.982129526 1.188652096 1.011610728 1.139748797 1.066090207 1.08480631 1.020469134 0.851381402 1 16.31394518 -7.546687437 4.998310014 0.925428944 1.082832526 0.483783593 0.065794056 0.142754857 9.586829846 0.041449506 0.015576331 2.84E-08 7.546687437 0.157403582 ANSTSDSVFTETPS(ph)PVLK ddPTM_HeLa_A486_30min_R1 1 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANSTSDSVFTET(0.004)PS(0.996)PVLK 156.13 1.28E-08 159560000 246050 276630 180620 126850 330210 304990 356120 327140 212950 326760 TRUE FALSE FALSE 228803.1656 254708.8313 250560.9012 295313.2106 288791.9827 267363.4347 267015.0093 252657.3634 231408.6775 244937.1691 0.934130032 1.039894566 1.022959896 1.20566924 1.179045156 1.091559258 1.090136749 1.03151908 0.944767502 1 17.90205219 -9.872996514 6.389957541 0.999999996 1.067053776 0.038536015 0.083340819 5.40E-09 8.14E-10 0.08724227 0.021159357 1.34E-10 9.872996514 0.06705378 ANSWQLVET(ph)PEK ddPTM_HeLa_A485_30min_R1 2 ANSWQLVETPEK 12 0 F8WF49;A0A0B4J2C2;Q9Y2H0-3;Q9Y2H0-1;Q9Y2H0 F8WF49 DLGAP4 Disks large-associated protein 4 1 0 ANSWQLVET(1)PEK;ANSWQLVET(1)PEK ; 163.27 1.31E-09 428330000 418810 357020 321278 638570 530010 386090 667150 522260 406900 827390 TRUE FALSE FALSE 511972.8396 398770.3833 440132.1017 673453.4622 477240.3434 406305.0754 524607.9524 394174.9161 488561.0977 621136.9 0.824251207 0.642000795 0.708591136 1.084227104 0.768333589 0.65413128 0.84459312 0.634602317 0.786559449 1 19.24455175 -10.41883315 2.816148392 1.005308844 0.769951448 0.226859221 0.126268614 23236106.93 26333092.95 987302.9079 0.032881884 3.81E-11 10.41883315 -0.235357395 ANSWQLVET(ph)PEK ddPTM_HeLa_A486_30min_R1 2 ANSWQLVETPEK 12 0 F8WF49;A0A0B4J2C2;Q9Y2H0-3;Q9Y2H0-1;Q9Y2H0 F8WF49 DLGAP4 Disks large-associated protein 4 1 0 ANSWQLVET(1)PEK;ANSWQLVET(1)PEK ; 165.33 1.13E-09 365480000 741110 735340 423140 399590 727840 796840 1089530 1036380 592340 1167870 TRUE FALSE FALSE 689162.0161 677068.9803 586991.1401 930265.7142 636547.5204 698533.9825 816918.0701 800418.898 643684.5081 875427.7504 0.78722889 0.773415031 0.670519229 1.062641336 0.727127419 0.797934475 0.933164467 0.914317484 0.735279991 1 19.73962859 -13.99999987 0.060212002 1.579148137 0.577328643 0.195129038 0.11016635 677.1125101 2.97097401 59.02647233 9.759048313 1.00E-14 13.99999987 -1.001819495 ANSWQLVET(ph)PEKR ddPTM_HeLa_A485_30min_R1 3 ANSWQLVETPEKR 13 1 F8WF49;A0A0B4J2C2;Q9Y2H0-3;Q9Y2H0-1;Q9Y2H0 F8WF49 DLGAP4 Disks large-associated protein 4 1 0 ANSWQLVET(1)PEKR;ANSWQLVET(1)PEKR;ANSWQLVET(1)PEKR ;; 228.32 8.60E-28 2055080000 1091080 933290 750550 1346320 1259960 1030800 1566380 1453830 945310 1868700 TRUE FALSE FALSE 1333786.982 1042430.147 1028209.678 1419866.053 1134513.958 1084771.094 1231710.117 1097275.913 1135025.046 1402867.481 0.950757645 0.743071004 0.732934288 1.012117019 0.808710711 0.773252719 0.877994631 0.782166475 0.809075028 1 20.4199473 -10.60090555 2.517235599 1.016873629 0.829426038 0.255892006 0.085706657 10778462.87 9285500.606 1198314.243 0.021370361 2.51E-11 10.60090555 -0.187447591 ANSWQLVET(ph)PEKR ddPTM_HeLa_A486_30min_R1 4 ANSWQLVETPEKR 13 1 F8WF49;A0A0B4J2C2;Q9Y2H0-3;Q9Y2H0-1;Q9Y2H0 F8WF49 DLGAP4 Disks large-associated protein 4 1 0 ANSWQLVET(1)PEKR;ANSWQLVET(1)PEKR;ANSWQLVET(1)PEKR;ANSWQLVET(1)PEKR ;;; 174.19 2.00E-12 3555390000 1621090 1655420 929890 783680 1604670 1825890 2289540 2106390 1386640 2318810 TRUE FALSE FALSE 1507459.962 1524238.49 1289968.311 1824446.645 1403397.326 1600630.256 1716672.876 1626810.979 1506835.072 1738164.883 0.86727098 0.876923993 0.742143811 1.049639573 0.807401725 0.920873659 0.987635231 0.935935937 0.866911469 1 20.72913351 -1.000000394 0.090159741 1.053559587 0.461917752 0.18940529 0.079357359 258.3372578 1.678068244 1.437272463 18.90478433 0.099999909 1.000000394 -0.591641835 ANT(ph)EPISK ddPTM_HeLa_A486_30min_R1 1 ANTEPISK 8 0 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ANT(1)EPISK 106.67 0.0066707 118450000 231090 281290 140530 178480 286910 375850 507990 503090 200530 442910 TRUE FALSE FALSE 214891.7843 258999.556 194946.9795 415510.4599 250923.0725 329481.4484 380885.529 388547.3894 217912.1019 332002.4531 0.647259628 0.78011338 0.587185359 1.251528282 0.755786802 0.992406668 1.147237092 1.170314815 0.656356903 1 18.34083438 -5.242592396 24.99854622 0.999443224 0.68237883 0.41497127 0.176510841 821.0648416 1089054.879 0.046708416 0.080726364 5.72E-06 5.242592396 -0.317064393 ANT(ph)PELKK ddPTM_HeLa_A485_30min_R1 4 ANTPELKK 8 1 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 ANT(1)PELKK;ANT(1)PELKK;ANT(1)PELKK;ANT(1)PELKK ;;; 131.43 0.00046325 2452060000 3517130 2258080 1215940 7151000 3884240 3109060 6268200 5352400 2402550 10051600 TRUE FALSE FALSE 4299503.435 2522142.813 1665766.805 7541641.023 3497511.427 3271845.574 4928947.864 4039715.508 2884719.748 7545921.106 0.569778477 0.334239224 0.220750626 0.999432795 0.463496951 0.433591278 0.653193665 0.53535088 0.382288618 1 22.84726559 -10.71476097 2.672894875 1.084219646 0.512247733 0.348692242 0.200790696 39868219.82 32973710.29 22504713.97 0.052501829 1.93E-11 10.71476097 -0.571971913 ANT(ph)PELKK ddPTM_HeLa_A486_30min_R1 4 ANTPELKK 8 1 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 ANT(1)PELKK;ANT(1)PELKK;ANT(1)PELKK;ANT(1)PELKK ;;; 98.105 0.0022186 2330300000 3548800 2950200 978370 3066710 2463020 4397480 6345200 5283110 2136280 7526200 TRUE FALSE FALSE 3300047.446 2716415.408 1357221.066 7139455.863 2154085.065 3854963.628 4757563.847 4080261.182 2321454.47 5641590.533 0.584949834 0.481498151 0.240574189 1.265504085 0.381822299 0.683311489 0.84330187 0.723246602 0.411489359 1 22.42767053 -14 0.083047964 1.991435105 0.335848826 0.131155344 0.275394449 523.3644739 3.054680691 98.57513646 8.414119169 1.00E-14 14 -1.655586278 ANT(ph)SGDFEKDDDAYKTEDSDDIHFEPVVQMPEK ddPTM_HeLa_A485_30min_R1 1 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEK 33 2 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 ANT(0.5)S(0.5)GDFEKDDDAYKTEDSDDIHFEPVVQMPEK 107.54 0.00010025 109050000 65727 34565 30196 134370 49229 46433 99379 82872 37159 169390 TRUE FALSE FALSE 80347.74439 38607.07607 41366.75696 141710.2929 44327.58791 48864.16008 78145.8648 62547.51206 44616.47046 127164.1904 0.631842535 0.303600219 0.325301933 1.114388354 0.348585461 0.38426038 0.614527286 0.491864194 0.35085719 1 16.95633294 -10.27783216 3.331683423 1.001909553 0.508182661 0.289906816 0.231350648 248935603.3 360691509.5 4845417.244 0.056574164 5.27E-11 10.27783216 -0.493726893 ANT(ph)SGDFEKDDDAYKTEDSDDIHFEPVVQMPEK ddPTM_HeLa_A486_30min_R1 1 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEK 33 2 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 ANT(0.5)S(0.5)GDFEKDDDAYKTEDSDDIHFEPVVQMPEK 190.89 3.03E-21 191940000 31584 33597 10932 25383 17907 49694 59821 48881 26750 79398 TRUE FALSE FALSE 29370.1247 30934.65136 15165.16317 59092.90679 15660.93708 43563.25953 44853.15308 37751.86336 29068.71154 59516.22401 0.493480983 0.51976838 0.254807213 0.992887364 0.263137276 0.731956038 0.753629012 0.634312139 0.488416596 1 15.86099538 -14 0.128418531 2.359805242 0.39948177 0.283725161 0.210337844 191.1827305 1.553524859 67.55300507 1.60790532 1.00E-14 14 -1.960323472 ANTIPIIGS(ph)PSSK ddPTM_HeLa_A486_30min_R1 1 ANTIPIIGSPSSK 13 0 E9PGM7;O94988-6;O94988-5;O94988-1;O94988 E9PGM7 FAM13A Protein FAM13A 1 0 ANTIPIIGS(0.459)PS(0.211)S(0.33)K 68.845 0.0085637 0 460910 436030 292000 143660 496040 486860 568890 472600 387070 588720 TRUE FALSE FALSE 428602.5891 401477.3948 405070.22 334447.7402 433822.0378 426796.1632 426547.7049 364999.2968 420621.5393 441300.6801 0.971225762 0.909759293 0.917900738 0.757868173 0.983053182 0.967132349 0.966569335 0.827098877 0.953140474 1 18.75140245 ANTIPIIGS(ph)PSSKR ddPTM_HeLa_A485_30min_R1 1 ANTIPIIGSPSSKR 14 1 E9PGM7;O94988-6;O94988-5;O94988-1;O94988 E9PGM7 FAM13A Protein FAM13A 1 0 ANTIPIIGS(0.981)PS(0.005)S(0.014)KR 82.765 0.0020138 208370000 276790 236750 157570 369740 265580 299630 397330 381180 195040 470650 TRUE FALSE FALSE 338360.9806 264435.853 215861.7 389937.96 239137.9227 315318.1635 312437.1996 287695.0073 234182.739 353325.6167 0.957646331 0.748419703 0.610942682 1.103622103 0.676820223 0.892429387 0.884275538 0.814248936 0.662795812 1 18.43063883 ANTLS(ph)PVR ddPTM_HeLa_A485_30min_R1 3 ANTLSPVR 8 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ANT(0.012)LS(0.988)PVR;ANTLS(1)PVR;ANT(0.001)LS(0.999)PVR ;; 136.86 0.00046728 4345110000 2300140 2632430 2406050 2466380 3338750 2516880 3208960 3432960 2609460 3352360 TRUE FALSE FALSE 2811798.208 2940269.789 3296148.019 2601112.094 3006332.327 2648659.945 2523339.481 2591021.177 3133154.687 2516678.348 1.117265625 1.168313699 1.309721611 1.033549677 1.194563592 1.052442775 1.002646796 1.02954006 1.244956349 1 21.26308941 -5.832436327 1.422627988 1.068248387 1.183380776 0.198283942 0.092913851 0.657206771 2.774393139 0.036204921 0.047094292 1.47E-06 5.832436327 0.115132389 ANTLS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 ANTLSPVR 8 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ANT(0.001)LS(0.999)PVR;ANT(0.001)LS(0.999)PVR;ANTLS(1)PVR ;; 150.22 4.10E-06 0 5113900 5914000 5407500 1873790 7234100 5541100 6250600 6183800 5049100 5537500 TRUE FALSE FALSE 4755442.018 5445353.102 7501428.818 4362277.816 6326731.723 4857495.42 4686633.768 4775883.731 5486760.053 4150873.957 1.145648379 1.311857011 1.807192629 1.050929964 1.524192685 1.170234382 1.129071568 1.150573055 1.321832489 1 21.98498369 -6.360163782 9.262958397 1.161355751 1.37150068 0.211845827 0.205780851 0.647023563 56.34294479 0.071248564 0.062786665 4.36E-07 6.360163782 0.210144929 ANTLS(ph)PVRFFVDKK ddPTM_HeLa_A485_30min_R1 2 ANTLSPVRFFVDKK 14 2 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ANTLS(1)PVRFFVDKK;ANTLS(1)PVRFFVDKK ; 212.69 6.96E-23 520100000 236592 668870 234222 106230 587360 1041530 1349350 3203400 307920 248309 TRUE FALSE FALSE 289221.0742 747088.5281 320870.4646 112033.0759 528880.3761 1096062.9 1061050.349 2417761.127 369716.7196 186410.1361 1.551530835 4.007767731 1.72131447 0.601003134 2.837186792 5.879846039 5.692020679 12.97011621 1.983350945 1 17.50812078 -1.028278632 17.61074239 4.095601807 2.624039621 0 3.527697851 0 0 0.853845203 0 0.093696068 1.028278632 -1.471562186 ANTLS(ph)PVRFFVDKK ddPTM_HeLa_A486_30min_R1 2 ANTLSPVRFFVDKK 14 2 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ANT(0.001)LS(0.999)PVRFFVDKK;ANT(0.004)LS(0.996)PVRFFVDKK ; 164.59 2.91E-12 157067000 266730 137838 111399 142341 435450 149462 352080 372500 106316 363640 TRUE FALSE FALSE 248033.6044 126915.2149 154535.6762 331377.0415 380831.8006 131022.8981 263985.8601 287689.8816 115531.5565 272582.1771 0.909940654 0.465603497 0.56693243 1.215695923 1.397126564 0.480673019 0.968463393 1.055424403 0.423841198 1 18.05633171 -5.231176401 24.58267015 0.938556758 0.629303258 0.161905002 0.298237306 1012.430431 822397.3014 0.082080036 0.142142056 5.87E-06 5.231176401 -0.3092535 ANTSGDFEKDDDAYKT(ph)EDSDDIHFEPVVQMPEK ddPTM_HeLa_A486_30min_R1 1 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEK 33 2 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 ANT(0.033)S(0.033)GDFEKDDDAY(0.287)KT(0.324)EDS(0.324)DDIHFEPVVQMPEK 64.914 0.0050554 270020000 14516 18321 9339 9551.5 20777 17055 25066 24169 11663 25338 TRUE FALSE FALSE 13498.50336 16869.17724 12955.31091 22236.37471 18170.95492 14950.9275 18794.22168 18666.24631 12673.95823 18993.19988 0.710701906 0.88816931 0.682102594 1.170754525 0.956708456 0.787172651 0.989523714 0.982785756 0.667289257 1 14.21319536 -5.205273669 24.99997739 0.932455317 0.773109114 0.258823493 0.135853954 447.2729198 199085.086 0.036405775 0.063056616 6.23E-06 5.205273669 -0.159346204 ANVFKMGEVYQMDAESCIEKT(ph)EGS(ph)AVILGMEK ddPTM_HeLa_A485_30min_R1 1 ANVFKMGEVYQMDAESCIEKTEGSAVILGMEK 32 2 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 2 0 ANVFKMGEVY(0.094)QMDAES(0.077)CIEKT(0.916)EGS(0.913)AVILGMEK 50.479 0.032689 1634000000 31164 124720 157740 7284.8 107410 84621 38119 74858 108610 20429 TRUE FALSE FALSE 38096.32429 139304.9191 216094.5901 7682.750178 96715.88326 89051.62471 29974.56425 56498.95813 130407.0308 15336.42627 2.484041824 9.083271203 14.09028325 0.500947877 6.306285543 5.806543399 1.954468644 3.683971555 8.503091169 1 13.90467472 -5.276562446 24.99653075 4.167383319 8.605606766 0.263900476 3.499275363 1094.915953 1809756.228 0.982741729 1.464123346 5.29E-06 5.276562446 4.438223447 ANVS(ph)SPHR ddPTM_HeLa_A485_30min_R1 1 ANVSSPHR 8 0 Q5QPM7;H0Y555;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.5)S(0.5)PHR 63.816 0.02627 83155000 123860 131120 107390 144580 99506 101180 110040 118980 119810 168270 TRUE FALSE FALSE 151412.2297 146453.3434 147118.0299 152478.0393 89598.83325 106477.6283 86529.05506 89799.96845 143854.768 126323.3858 1.19860807 1.159352581 1.164614366 1.207045223 0.709281442 0.842897201 0.684980493 0.710873667 1.138781764 1 16.94676222 -5.752613211 24.9841329 0.824959749 1.179487771 0.599778065 0.133112031 123.4242758 349373.8273 0.038965984 0.049538819 1.77E-06 5.752613211 0.354528021 ANVS(ph)SPHREFPPATAR ddPTM_HeLa_A485_30min_R1 8 ANVSSPHREFPPATAR 16 1 Q5QPM7;H0Y555;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.583)S(0.417)PHREFPPATAR;ANVS(0.684)S(0.316)PHREFPPATAR;ANVS(0.567)S(0.433)PHREFPPATAR;ANVS(0.5)S(0.5)PHREFPPATAR;ANVS(0.55)S(0.45)PHREFPPATAR;ANVS(0.5)S(0.5)PHREFPPATAR;ANVS(0.5)S(0.5)PHREFPPATAR;ANVS(0.5)S(0.5)PHREFPPATAR ;;;;;;; 94.632 0.00045281 2238610000 502483 592338 637586 590197 828923 716458 881622 977855 589045 901199 TRUE FALSE FALSE 614258.6098 661606.7764 873455.5936 622437.9677 746392.5156 753970.633 693256.2575 738034.528 707260.9285 676546.6746 0.907932346 0.977917417 1.291050014 0.920022211 1.103238762 1.114439936 1.024698345 1.090884865 1.045398573 1 19.36782994 -4.53380689 25 1.076381656 0.925428484 0.262678213 0.090929779 217.3555021 497237.8717 0.021770688 0.057716967 2.93E-05 4.53380689 -0.150953172 ANVS(ph)SPHREFPPATAR ddPTM_HeLa_A486_30min_R1 5 ANVSSPHREFPPATAR 16 1 Q5QPM7;H0Y555;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.5)S(0.5)PHREFPPATAR;ANVS(0.597)S(0.403)PHREFPPATAR;ANVS(0.706)S(0.294)PHREFPPATAR;ANVS(0.5)S(0.5)PHREFPPATAR;ANVS(0.5)S(0.5)PHREFPPATAR ;;;; 116.39 6.77E-05 1280910000 946957 986826 841422 470118 1263295 1118076 1300940 1343393 923357 1340010 TRUE FALSE FALSE 880580.2044 908626.3138 1167243.132 1094458.462 1104840.761 980139.1509 975431.0521 1037531.74 1003394.328 1004462.774 0.876667834 0.904589336 1.162057134 1.089595842 1.099932013 0.975784445 0.971097264 1.032922042 0.998936301 1 19.93799267 -4.612207253 9.187158941 1.041334608 0.883676635 0.524661484 0.057622365 0.213304411 19.46412263 0.015996823 0.042489319 2.44E-05 4.612207253 -0.157657974 ANVSS(ph)PHR ddPTM_HeLa_A485_30min_R1 3 ANVSSPHR 8 0 Q5QPM7;H0Y555;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.008)S(0.992)PHR;ANVS(0.003)S(0.997)PHR;ANVS(0.008)S(0.992)PHR ;; 106.4 0.0010157 1159450000 1142820 1084960 885260 1353640 792180 876960 970670 933730 1082110 1532290 TRUE FALSE FALSE 1397036.366 1211836.634 1212754.513 1427585.926 713307.7777 922876.2696 763278.4249 704731.2535 1299279.551 1150318.303 1.214478082 1.053479399 1.054277333 1.241035566 0.620096 0.802279045 0.663536712 0.612640216 1.129495678 1 20.13360169 -5.756911021 24.99999992 0.77812994 1.128397727 0.496617246 0.164305956 91.89199554 507310.5325 0.047810493 0.059632673 1.75E-06 5.756911021 0.350267788 ANVSS(ph)PHR ddPTM_HeLa_A486_30min_R1 4 ANVSSPHR 8 0 Q5QPM7;H0Y555;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.012)S(0.988)PHR;ANVS(0.008)S(0.992)PHR;ANVS(0.01)S(0.99)PHR;ANVS(0.01)S(0.99)PHR ;;; 101.3 0.0014732 1370060000 1381060 1025520 1596200 426091 1036020 2110880 1250080 1039950 2012190 1512940 TRUE FALSE FALSE 1284254.826 944254.0603 2214291.388 991961.3814 906072.7111 1850461.087 937296.762 803176.0869 2186608.249 1134089.976 1.132409996 0.832609475 1.95248299 0.874676086 0.798942527 1.631670437 0.826474778 0.708211962 1.928072988 1 20.11310367 ANVSS(ph)PHREFPPATAR ddPTM_HeLa_A486_30min_R1 1 ANVSSPHREFPPATAR 16 1 Q5QPM7;H0Y555;Q5QPM9;Q92530 Q5QPM7;Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.164)S(0.836)PHREFPPATAR 94.313 0.00039991 128210000 31332 43987 29783 14807 40675 44124 56236 53649 25787 43416 TRUE FALSE FALSE 29135.7886 40501.30992 41315.77522 34471.4443 35573.16222 38680.4295 42165.158 41434.29385 28022.23792 32544.35101 0.895264084 1.244495855 1.269522173 1.059214372 1.093067187 1.188545118 1.295621412 1.273163931 0.86104768 1 14.99011952 -7.766319286 24.99994773 0.930523775 1.170238287 0.375779539 0.120651438 134.2517464 687737.6448 0.105232315 0.030571649 1.71E-08 7.766319286 0.239714512 ANVVTT(ph)PSTNRK ddPTM_HeLa_A485_30min_R1 1 ANVVTTPSTNRK 12 1 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;E9PDP5 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 ANVVT(0.046)T(0.949)PS(0.004)T(0.001)NRK 72.417 0.0093588 863790000 238930 250200 216490 289130 353370 284160 379090 368160 242810 393200 TRUE FALSE FALSE 292079.1542 279458.7135 296578.6599 304924.4398 318187.242 299038.1782 298094.3246 277868.1827 291539.7398 295182.4763 0.989486767 0.946732059 1.0047299 1.03300319 1.07793405 1.013062096 1.00986457 0.941343762 0.987659374 1 18.17124755 -10.06770042 13.58015631 1.000000038 1.001120663 0 0.03741233 0 0 0.040592218 0.009845059 8.56E-11 10.06770042 0.001120625 ANWYFLLAR ddPTM_HeLa_A485_30min_R1 2 ANWYFLLAR 9 0 B7Z9I1;Q5T4U5;P11310;P11310-2 B7Z9I1 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" 0 0 ; ; 161.9 1.09E-05 63672000 39631 49205 43785 45100 49027 53791 59153 65074 31432 68437 FALSE FALSE TRUE 48446.77922 54959.09672 59982.89355 47563.6988 44145.69974 56607.41358 46514.47831 49114.49947 37740.11409 51376.91539 0.942967846 1.069723558 1.167506712 0.925779573 0.859251658 1.101806388 0.905357551 0.955964349 0.734573374 1 15.64883265 -6.16603575 0.684556686 0.894263534 1.047431438 0.174045974 0.10823812 1.287626644 1.335408967 0.080629143 0.091846451 6.82E-07 6.16603575 0.153167904 ANWYFLLAR ddPTM_HeLa_A486_30min_R1 2 ANWYFLLAR 9 0 B7Z9I1;Q5T4U5;P11310;P11310-2 B7Z9I1 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" 0 0 ; ; 135.77 0.0011619 38519000 13027.4 22592 17909.8 9435.1 27270 22148 25186 26460 20900.8 23045 FALSE FALSE TRUE 12114.24653 20801.72764 24844.9542 21965.38962 23849.54232 19415.60494 18884.19641 20435.63562 22712.49817 17274.382 0.701283932 1.204195186 1.4382543 1.271558636 1.380630712 1.123953664 1.093190854 1.183002415 1.314808146 1 14.07634648 -4.265739271 5.430332833 1.236430862 0.682224399 0.603090207 0.126872745 0.097283386 10.86369574 0.03236953 0.200716741 5.42E-05 4.265739271 -0.554206462 ANYES(ph)PGKIFLR ddPTM_HeLa_A485_30min_R1 1 ANYESPGKIFLR 12 1 Q6P0N0;C9J2Q8;G5E9K5;Q6P0N0-2 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 ANYES(1)PGKIFLR 124.5 2.16E-05 62208000 100990 104950 94557 136290 192600 158860 186040 230270 122740 214890 TRUE FALSE FALSE 123454.8771 117222.9896 129537.5691 143735.1776 173424.0677 167177.664 146291.0342 173795.9215 147372.7922 161321.8778 0.765270519 0.726640374 0.802975833 0.890983787 1.075018901 1.036298773 0.906826998 1.077323943 0.913532586 1 17.29958258 -5.376985905 2.44602101 1.001773406 0.753019299 0.772664957 0.05737145 0.128608444 1.499791287 0.016867929 0.028180267 4.20E-06 5.376985905 -0.248754106 APAASEGNHTDGAEEAAGSCAQAPSHS(ph)PPNKPK ddPTM_HeLa_A485_30min_R1 1 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPK 33 1 F8W6N3;Q92560 F8W6N3 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 APAASEGNHTDGAEEAAGSCAQAPS(0.064)HS(0.936)PPNKPK 173.7 5.70E-15 86257000 67185 48117 42095 82347 79571 65521 91479 78452 61639 125840 TRUE FALSE FALSE 82130.07146 53743.86459 57667.69222 86845.4081 71648.63185 68951.57825 71933.76434 59211.52399 74009.38191 94470.40391 0.869373561 0.568896314 0.610431308 0.919286935 0.758424108 0.729874917 0.761442329 0.62677327 0.783413417 1 16.52757481 -8.025193146 23.46071211 1.000000004 0.727876583 0.375495158 0.103929361 1158.638818 1078963.699 0.101107003 0.026105716 9.44E-09 8.025193146 -0.272123421 APAASEGNHTDGAEEAAGSCAQAPSHS(ph)PPNKPK ddPTM_HeLa_A486_30min_R1 3 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPK 33 1 F8W6N3;Q92560 F8W6N3 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 APAASEGNHTDGAEEAAGSCAQAPS(0.016)HS(0.984)PPNKPK;APAASEGNHTDGAEEAAGSCAQAPS(0.047)HS(0.953)PPNKPK;APAASEGNHTDGAEEAAGS(0.001)CAQAPS(0.253)HS(0.747)PPNKPK ;; 242.6 6.32E-51 1970940000 844340 896610 467200 118300 773250 1021100 1160790 1055050 759450 906860 TRUE FALSE FALSE 785156.1262 825559.3582 648112.352 275408.3786 676261.7747 895127.0638 870348.0644 814838.1466 825279.7375 679776.3533 1.155021239 1.214457305 0.953419972 0.405145571 0.994829802 1.316796413 1.280344719 1.19868563 1.214045963 1 19.37470065 -6.131108066 5.972799086 1.217583288 0.924733685 0.261071409 0.216891733 0.33883032 15.05351024 0.078726727 0.078942688 7.39E-07 6.131108066 -0.292849603 APAGPSLEETSVSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 APAGPSLEETSVSSPK 16 0 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 APAGPSLEETSVS(0.167)S(0.833)PK;APAGPSLEETSVS(0.085)S(0.914)PK ; 97.417 0.00065533 665790000 439960 516040 326900 353680 536590 648250 803920 758700 430960 918860 TRUE FALSE FALSE 409121.076 475147.111 453484.4347 823384.914 469285.8787 568275.5059 602770.713 585960.5723 468315.9598 688771.4752 0.593986671 0.689847254 0.658396073 1.195439915 0.681337563 0.825056679 0.875138903 0.850732926 0.679929377 1 19.39366587 -5.055281467 24.99996126 0.861884971 0.649965373 0.342995915 0.142274525 332.7745732 150490.1991 0.037354976 0.064701136 8.80E-06 5.055281467 -0.211919598 APALS(ph)PTRPPK ddPTM_HeLa_A485_30min_R1 1 APALSPTRPPK 11 1 O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 APALS(0.975)PT(0.025)RPPK 52.101 0.022145 545800000 634730 647560 463880 1133500 911540 541310 903690 620000 675730 1356400 TRUE FALSE FALSE 775923.4987 723286.509 635488.5157 1195420.235 820783.877 569652.1546 710609.249 467944.0279 811342.8128 1018274.443 0.761998403 0.710306062 0.624083733 1.173966649 0.806053695 0.559428903 0.697856314 0.459546079 0.796782065 1 19.95769501 -6.133858307 8.66842892 0.668945625 0.819884472 0.067115772 0.190188999 0.691468907 45.36348035 0.06267965 0.062726271 7.35E-07 6.133858307 0.150938847 APALS(ph)PTRPPK ddPTM_HeLa_A486_30min_R1 2 APALSPTRPPK 11 1 O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 APALS(0.5)PT(0.5)RPPK;APALS(0.994)PT(0.006)RPPK ; 87.863 0.001503 1562350000 2917900 2356770 1162030 1046340 1892620 2241210 2672100 2644500 1522350 2968600 TRUE FALSE FALSE 2713370.278 2170010.962 1611999.136 2435932.399 1655229.952 1964712.297 2003512.317 2042405.079 1654308.524 2225243.238 1.219358959 0.975179219 0.724414801 1.094681407 0.743842257 0.882920242 0.900356547 0.917834529 0.743428177 1 21.08553161 -4.339895991 3.458605392 0.875961774 1.23658108 0.460051536 0.111875416 0.208152516 4.119293446 0.026334423 0.170281941 4.57E-05 4.339895991 0.360619307 APAPQPPSLPDRS(ph)PRPQR ddPTM_HeLa_A485_30min_R1 6 APAPQPPSLPDRSPRPQR 18 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 APAPQPPS(0.001)LPDRS(0.999)PRPQR;APAPQPPS(0.001)LPDRS(0.999)PRPQR;APAPQPPS(0.001)LPDRS(0.999)PRPQR;APAPQPPS(0.063)LPDRS(0.937)PRPQR;APAPQPPS(0.004)LPDRS(0.996)PRPQR;APAPQPPSLPDRS(1)PRPQR ;;;;; 109.37 5.11E-05 6852530000 1070900 1626210 1753760 1124387 1792900 1542470 1613490 1833730 1439628 1537443 TRUE FALSE FALSE 1309118.01 1816381.113 2402548.804 1185809.415 1614392.581 1623231.344 1268754.68 1384004.842 1728548.135 1154186.755 1.134234131 1.573732419 2.081594503 1.027398218 1.39872735 1.406385351 1.099262901 1.199116899 1.497632968 1 20.13844525 -5.296835511 24.99930746 1.24954434 1.594242298 0.284358606 0.263570114 787.0758736 555888.2722 0.074357719 0.110294971 5.05E-06 5.296835511 0.344697958 APAPQPPSLPDRS(ph)PRPQR ddPTM_HeLa_A486_30min_R1 5 APAPQPPSLPDRSPRPQR 18 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 APAPQPPS(0.002)LPDRS(0.998)PRPQR;APAPQPPS(0.018)LPDRS(0.982)PRPQR;APAPQPPS(0.002)LPDRS(0.998)PRPQR;APAPQPPS(0.008)LPDRS(0.992)PRPQR;APAPQPPS(0.007)LPDRS(0.993)PRPQR ;;;; 106.42 6.09E-05 6727930000 580188 785100 738830 228560 915890 650091 717229 679423 601939 608707 TRUE FALSE FALSE 539519.8173 722885.8167 1024924.763 532099.2308 801010.5359 569889.3821 537770.7181 524733.2146 654115.5572 456282.8052 1.18242417 1.584293356 2.246248929 1.16616104 1.755513306 1.248982814 1.178590804 1.150017508 1.433574857 1 18.79956876 -6.349886578 6.259189573 1.205935405 1.599357363 0.290519411 0.30060603 0.324794538 18.93400975 0.106476584 0.093698236 4.47E-07 6.349886578 0.393421957 APAPS(ph)PAKEER ddPTM_HeLa_A485_30min_R1 3 APAPSPAKEER 11 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 1 0 APAPS(1)PAKEER;APAPS(1)PAKEER;APAPS(1)PAKEER ;; 121.42 6.21E-05 2417130000 3209010 3207260 2253500 4860100 3432560 4085590 5515700 5137700 3356870 9520300 TRUE FALSE FALSE 3922843.204 3582321.158 3087163.426 5125594.957 3090802.274 4299505.175 4337225.636 3877671.019 4030563.018 7147064.418 0.548874751 0.501229728 0.431948454 0.717160873 0.432457593 0.601576385 0.606854141 0.542554368 0.563946647 1 22.76891936 -14 0.309405575 4.98522936 0.528048017 0.746149198 0.0791475 139.8348128 1.27219836 362.9251048 0.072887391 1.00E-14 14 -4.457181343 APAPS(ph)PAKEER ddPTM_HeLa_A486_30min_R1 4 APAPSPAKEER 11 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 1 0 APAPS(1)PAKEER;APAPS(1)PAKEER;APAPS(1)PAKEER;APAPS(1)PAKEER ;;; 103.66 0.00042802 2568740000 2689290 3015980 2378730 1378050 4173180 3706130 3944590 3740310 3387460 5628800 TRUE FALSE FALSE 2500784.659 2776982.761 3299837.961 3208170.043 3649740.851 3248905.362 2957611.86 2888723.063 3681087.76 4219311.843 0.592699651 0.658160113 0.782079657 0.760353859 0.865008558 0.770008353 0.700970199 0.684643177 0.872437947 1 22.00857629 -14 0.109017903 1.787752235 0.59927949 0.579541344 0.07354298 145.8039584 1.057511159 25.93861996 1.060217603 1.00E-14 14 -1.188472745 APAQK(ac)APAPK ddPTM_HeLa_A485_30min_R1 2 APAQKAPAPK 10 1 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 ; APAQK(1)APAPK;APAQK(1)APAPK 154.49 0.00046043 68644000 120595 140208 124685 131062 174594 150546 181089 234700 140394 244210 FALSE TRUE FALSE 147420.9417 156604.106 170811.1701 138221.5852 157210.8083 158428.3558 142397.8558 177139.457 168569.788 183332.9414 0.804115947 0.854206041 0.931699283 0.753937531 0.857515333 0.864156515 0.776717238 0.966217286 0.919473537 1 17.48410651 -7.277851951 24.88766417 0.957134079 0.838021476 0.571285435 0.050415016 614.0094168 931065.2616 0.026903246 0.012984299 5.27E-08 7.277851951 -0.119112603 APAQK(ac)APAPK ddPTM_HeLa_A486_30min_R1 2 APAQKAPAPK 10 1 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 ; APAQK(1)APAPK;APAQK(1)APAPK 157.68 5.61E-05 92236000 147626 172159 129297 63428 194904 163386 189631 189696 137879 194726 FALSE TRUE FALSE 137278.1797 158516.4938 179364.2611 147663.5895 170457.3229 143229.0965 142183.3181 146506.3618 149830.4627 145965.3421 0.94048476 1.085987204 1.228814035 1.011634593 1.167793124 0.981254142 0.974089575 1.003706494 1.026479715 1 17.15526633 -6.289284706 24.76785887 0.995899103 1.090587621 0.26570456 0.074535849 894.8601707 795956.8675 0.026267411 0.023170545 5.14E-07 6.289284706 0.094688518 APAS(ph)PGAGSDAQGPQFGWDHSLHK ddPTM_HeLa_A486_30min_R1 1 APASPGAGSDAQGPQFGWDHSLHK 24 0 Q5T6F0 Q5T6F0 DCAF12 DDB1- and CUL4-associated factor 12 1 0 APAS(1)PGAGSDAQGPQFGWDHSLHK 269.27 2.52E-62 261640000 234920 310230 237980 39990 301960 272590 294330 252480 254490 239260 TRUE FALSE FALSE 218453.3211 285646.245 330132.2293 93098.74098 264085.3611 238960.6173 220685.5209 194995.8156 276549.3981 179347.7387 1.218043354 1.592694991 1.840738176 0.519096263 1.472476671 1.332387122 1.230489565 1.087249926 1.541973153 1 17.45240003 -1.000001443 0.02922201 5.85E-07 3.138561562 0.06566126 0.337805725 4245.906044 9.539583034 330.6294339 783.1000061 0.099999668 1.000001443 3.138560977 APAS(ph)PGAGSDAQGPQFGWDHSLHKR ddPTM_HeLa_A486_30min_R1 1 APASPGAGSDAQGPQFGWDHSLHKR 25 1 Q5T6F0 Q5T6F0 DCAF12 DDB1- and CUL4-associated factor 12 1 0 APAS(0.999)PGAGS(0.001)DAQGPQFGWDHSLHKR 102.03 0.00081328 119920000 72650 80276 56309 31471 92946 81451 91709 91819 73921 108570 TRUE FALSE FALSE 67557.61016 73914.6374 78113.35281 73266.07846 81287.84599 71402.40375 68762.4382 70913.81809 80328.5318 81383.36533 0.830115711 0.908227831 0.959819645 0.900258648 0.998826304 0.877358702 0.844920064 0.871355194 0.987038708 1 16.31244632 -7.820515997 7.415625844 0.995884509 0.902127263 0.384653204 0.047763157 0.287231239 29.55033605 0.048092027 0.012562292 1.51E-08 7.820515997 -0.093757246 APASVLPAAT(ph)PR ddPTM_HeLa_A485_30min_R1 3 APASVLPAATPR 12 0 P13861;P13861-2;C9J830 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 APASVLPAAT(1)PR;APASVLPAAT(1)PR;APASVLPAAT(1)PR ;; 170.89 6.54E-10 823030000 504800 543320 543850 636820 736470 593310 716910 705260 533560 860030 TRUE FALSE FALSE 617091.0185 606856.5477 745042.7465 671607.8641 663144.4609 624374.7942 563736.3219 532293.8792 640640.5979 645640.3487 0.955781372 0.939929713 1.153959396 1.040219784 1.027111243 0.967062848 0.873142955 0.82444333 0.992256136 1 19.30037122 -6.486380441 3.536128347 0.908215866 1.026322595 0.290910091 0.07271438 0.278327194 7.201273697 0.02903102 0.023881686 3.26E-07 6.486380441 0.118106729 APASVLPAAT(ph)PR ddPTM_HeLa_A486_30min_R1 4 APASVLPAATPR 12 0 P13861;P13861-2;C9J830 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 APASVLPAAT(1)PR;APASVLPAAT(1)PR;APASVLPAAT(1)PR;APASVLPAAT(1)PR ;;; 177.93 4.79E-11 977430000 868220 1022800 887670 380664 1161540 1041200 1181550 1137570 854650 1136310 TRUE FALSE FALSE 807362.2615 941749.603 1231399.597 886205.0297 1015848.822 912747.3301 885913.6928 878570.144 928731.7501 851770.5799 0.947863522 1.105637627 1.445693976 1.040426907 1.192631967 1.071588232 1.04008487 1.03146336 1.090354342 1 19.70010537 -6.417042114 4.576110106 1.044396408 1.154626905 0.144644864 0.121955007 0.468395462 15.91869947 0.045536938 0.039486492 3.83E-07 6.417042114 0.110230497 APCS(ph)PARGPER ddPTM_HeLa_A485_30min_R1 1 APCSPARGPER 11 1 Q969J2 Q969J2 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 1 0 APCS(1)PARGPER 47.774 0.026756 305120000 126610 190890 185410 124890 210820 179460 230590 239890 179940 176110 TRUE FALSE FALSE 154773.9577 213212.925 254000.8746 131712.4245 189830.0206 188856.2481 181322.5628 181056.6014 216052.3075 132209.0181 1.170676252 1.612695776 1.921206876 0.996243875 1.435832618 1.428467217 1.371484074 1.369472401 1.634172242 1 17.01246106 -10.14784381 4.448520599 0.99993576 1.439886966 0.229704378 0.240490358 26162092.52 59680271.2 10743.10156 0.057802771 7.11E-11 10.14784381 0.439951206 APCS(ph)PARGPER ddPTM_HeLa_A486_30min_R1 2 APCSPARGPER 11 1 Q969J2 Q969J2 ZKSCAN4 Zinc finger protein with KRAB and SCAN domains 4 1 0 APCS(1)PARGPER;APCS(1)PARGPER ; 71.98 0.0059797 1105190000 412540 497060 519360 154642 651430 466140 548300 546690 481720 509860 TRUE FALSE FALSE 383623.0764 457671.1553 720470.1009 360014.3912 569721.5751 408632.3862 411109.5407 422220.6212 523475.8775 382187.7374 1.003755586 1.197503506 1.885120925 0.941983104 1.490685125 1.069192824 1.075674336 1.104746646 1.369682557 1 18.54392196 -6.290335993 24.36090785 1.127394368 1.310097414 0.105140482 0.262069276 1288.900202 1086585.315 0.091469689 0.080684565 5.12E-07 6.290335993 0.182703047 APDPEGLARPVS(ph)PDSPEIISELQQYADVAAAR ddPTM_HeLa_A485_30min_R1 2 APDPEGLARPVSPDSPEIISELQQYADVAAAR 32 1 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 0 APDPEGLARPVS(0.97)PDS(0.028)PEIIS(0.002)ELQQYADVAAAR;APDPEGLARPVS(0.997)PDS(0.003)PEIISELQQYADVAAAR ; 58.257 0.007766 120507000 4763.6 7730.4 7315.9 5750.5 7186 5350.5 7819.5 7224.1 5860.1 7335.1 TRUE FALSE FALSE 5823.246386 8634.403034 10022.35585 6064.635254 6470.536608 5630.643907 6148.799946 5452.378148 7036.168318 5506.594563 1.057504111 1.568011397 1.82006424 1.101340436 1.1750523 1.022527416 1.116624781 0.990154275 1.277771268 1 12.42694467 -5.34018037 13.83205745 1.098017338 1.490442082 0.457301275 0.191740837 1.530121565 267.4527488 0.053842768 0.079863621 4.57E-06 5.34018037 0.392424744 APDPEGLARPVS(ph)PDSPEIISELQQYADVAAAR ddPTM_HeLa_A486_30min_R1 1 APDPEGLARPVSPDSPEIISELQQYADVAAAR 32 1 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 0 APDPEGLARPVS(0.939)PDS(0.057)PEIIS(0.003)ELQQYADVAAAR 86.544 0.00013404 38134000 4513.6 4970.2 6577.2 2866.5 5637.1 3752.3 5650 5912.8 4684.7 4233.6 TRUE FALSE FALSE 4197.219948 4576.343251 9124.067984 6673.356865 4930.042354 3289.379377 4236.31024 4566.584516 5090.773568 3173.479004 1.322592632 1.442058777 2.875099527 2.102852061 1.553513462 1.03652155 1.334910436 1.438983686 1.60416173 1 11.63184958 -5.938285839 4.813866403 1.310848712 1.962445703 0.341085117 0.425534945 0.258419226 12.05263255 0.145291224 0.164321011 1.15E-06 5.938285839 0.651596991 APDSGLPSGGGGRPGCAYPGS(ph)PGPGAR ddPTM_HeLa_A486_30min_R1 2 APDSGLPSGGGGRPGCAYPGSPGPGAR 27 1 Q6PJ61 Q6PJ61 FBXO46 F-box only protein 46 1 0 APDSGLPSGGGGRPGCAYPGS(1)PGPGAR;APDSGLPSGGGGRPGCAYPGS(1)PGPGAR ; 122.45 6.19E-12 261280000 93726 111474 96521 32640 124780 90374 118849 107241 92839 123417 TRUE FALSE FALSE 87156.2914 102640.3943 133896.5161 75987.56953 109128.9289 79224.57474 89111.72314 82824.56535 100886.3593 92512.57989 0.942102053 1.109474997 1.447333068 0.821375532 1.179611778 0.856365424 0.963238981 0.89527895 1.090515035 1 16.49736194 -5.293145235 24.99898279 0.971402197 1.160620855 0.253352013 0.152489391 899.3310641 709089.8864 0.042151457 0.062526772 5.09E-06 5.293145235 0.189218658 APEAAVSEDGKS(ph)DDELLSSK ddPTM_HeLa_A486_30min_R1 1 APEAAVSEDGKSDDELLSSK 20 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 APEAAVS(0.001)EDGKS(0.999)DDELLSSK 108.44 1.52E-05 206590000 172660 139790 82124 105820 130820 187550 226220 216740 103120 362300 TRUE FALSE FALSE 160557.4256 128712.5313 113924.6122 246354.3078 114411.3358 164411.9879 169617.3633 167393.0334 112058.5246 271577.7218 0.591202491 0.47394363 0.419491744 0.907122669 0.421283951 0.605395711 0.624562877 0.616372478 0.41262046 1 18.05100561 -10.14706993 4.070342852 1.000110363 0.567181209 0.462635039 0.14106398 185750874.4 372089710.4 360654.3472 0.034097337 7.13E-11 10.14706993 -0.432929154 APELPNTSSS(ph)PSLK ddPTM_HeLa_A486_30min_R1 2 APELPNTSSSPSLK 14 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 APELPNTSS(0.027)S(0.973)PSLK;APELPNTSS(0.041)S(0.959)PSLK ; 206.27 5.20E-22 325250000 542950 653150 400320 227351 659210 596950 672290 697460 458580 727490 TRUE FALSE FALSE 504892.0088 601392.0153 555334.6249 529284.6177 576525.7349 523304.3783 504075.9312 538663.5834 498330.0836 545321.7688 0.925860726 1.102820481 1.018361372 0.970591397 1.0572212 0.959624956 0.92436422 0.987790355 0.913827601 1 19.05674822 -6.375202425 7.51984293 0.953705895 1.017466717 0.247662235 0.050220547 0.360325068 21.48453273 0.016920213 0.014892187 4.21E-07 6.375202425 0.063760822 APEPDLMS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 APEPDLMSPTR 11 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 APEPDLMS(0.902)PT(0.098)R;APEPDLMS(0.987)PT(0.013)R ; 132.79 3.37E-05 240460000 170264 207502 193655 56329 215270 188686 200252 209410 186086 177294 TRUE FALSE FALSE 158329.3728 191058.7858 268643.4023 131136.7587 188268.8293 165407.8397 150146.8316 161731.9144 202216.0843 132898.4284 1.191356247 1.437630137 2.021418955 0.98674424 1.416636988 1.244618478 1.129786359 1.216958818 1.521583714 1 17.01996452 -5.297188888 24.99971268 1.231541142 1.538885458 0.276374491 0.246277853 808.5490944 565418.4794 0.068766376 0.102000905 5.04E-06 5.297188888 0.307344316 APES(ph)DT(ph)GDEDQDQER ddPTM_HeLa_A486_30min_R1 2 APESDTGDEDQDQER 15 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 2 0 APES(1)DT(1)GDEDQDQER;APES(1)DT(1)GDEDQDQER ; 246.69 4.37E-41 487040000 234710 295670 215620 74859 268660 231290 233120 225580 265460 274280 TRUE FALSE FALSE 218258.041 272240.0324 299113.8385 174275.5352 234962.1576 202755.7914 174790.9103 174220.3584 288470.2865 205598.5027 1.061574078 1.324134314 1.45484444 0.847649826 1.142820373 0.986173482 0.850156533 0.847381455 1.403075814 1 17.64947023 -5.263348454 24.99609984 1.002429347 1.284579278 0.313429924 0.182199655 194.116318 2541633.717 0.050272251 0.078986269 5.45E-06 5.263348454 0.282149931 APES(ph)DTGDEDQDQER ddPTM_HeLa_A485_30min_R1 1 APESDTGDEDQDQER 15 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.67)DT(0.33)GDEDQDQER 303.59 1.10E-67 706550000 469610 533860 477160 592900 486900 542750 602020 627810 508030 779690 TRUE FALSE FALSE 574073.1244 596290.283 653681.3403 625288.6257 438422.5264 571167.5507 473393.5089 473838.6131 609986.9611 585327.6321 0.980772294 1.018729085 1.116778543 1.068271155 0.749020723 0.975808281 0.80876672 0.809527156 1.042129104 1 19.15888486 -5.72853328 24.99613162 0.88749283 1.049225901 0.37739626 0.09293165 186.1604088 141410.3403 0.026631677 0.034378949 1.87E-06 5.72853328 0.16173307 APES(ph)DTGDEDQDQER ddPTM_HeLa_A486_30min_R1 2 APESDTGDEDQDQER 15 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.999)DT(0.001)GDEDQDQER;APES(0.974)DT(0.026)GDEDQDQER ; 390.99 2.06E-134 1568750000 1285050 1322770 1171570 501450 1249420 1370600 1325900 1243530 1393220 1730290 TRUE FALSE FALSE 1194974.631 1217948.888 1625233.28 1167400.942 1092706.093 1201509.307 994145.7961 960405.3651 1513985.431 1297014.122 0.921327387 0.939040576 1.253057505 0.900068027 0.842478177 0.926365633 0.766488028 0.7404741 1.167285233 1 20.30676276 -5.482716608 24.99874915 0.886597503 1.036036907 0.144495594 0.141639184 871.9426615 542736.4034 0.039575139 0.058690313 3.29E-06 5.482716608 0.149439405 APES(ph)DTGDEDQDQERDTVFLK ddPTM_HeLa_A485_30min_R1 2 APESDTGDEDQDQERDTVFLK 21 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.997)DT(0.003)GDEDQDQERDTVFLK;APES(0.73)DT(0.27)GDEDQDQERDTVFLK ; 231.21 1.52E-36 743800000 96214 103550 89189 125000 161440 125980 180870 152570 119910 219780 TRUE FALSE FALSE 117616.4724 115659.2717 122183.7226 131828.4335 145366.4667 132576.118 142225.6469 115151.9683 143974.8371 164992.8908 0.71285782 0.700995487 0.740539317 0.798994629 0.88104685 0.803526245 0.862010759 0.697920788 0.872612368 1 17.33204434 -14 0.059158859 1.735280689 0.465191152 0.604847301 0.058482595 318.223635 1.373765632 34.71518441 5.919204366 1.00E-14 14 -1.270089537 APES(ph)DTGDEDQDQERDTVFLK ddPTM_HeLa_A486_30min_R1 1 APESDTGDEDQDQERDTVFLK 21 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.998)DT(0.002)GDEDQDQERDTVFLK 204.31 6.96E-27 378260000 82515 98353 78251 49966 164620 142440 139940 156660 80338 118140 TRUE FALSE FALSE 76731.12461 90559.15008 108551.8828 116323.3731 143971.8246 124867.201 104925.5319 120991.9379 87301.76253 88556.97504 0.866460542 1.022608892 1.225785804 1.313542757 1.625753641 1.410021074 1.184836449 1.366260962 0.985825933 1 16.43431832 -4.660529622 2.159109439 1.300740017 0.870530384 0.341653523 0.180593186 0.371693178 3.16465706 0.050608469 0.225299734 2.19E-05 4.660529622 -0.430209632 APFAAHGYGAFLTLSILDR ddPTM_HeLa_A486_30min_R1 1 APFAAHGYGAFLTLSILDR 19 0 A0A087WVV1;P49721 A0A087WVV1 PSMB2 Proteasome subunit beta type-2 0 0 208.2 2.37E-23 20015000 13854 18934 19235 7899.9 22175 17912 21318 19335 19451 19601 FALSE FALSE TRUE 12882.90614 17433.60088 26683.30713 18391.36644 19393.60473 15702.19956 15984.01092 14932.84258 21137.02834 14692.78202 0.876818708 1.186541859 1.816082693 1.251727986 1.319940955 1.068701593 1.087881853 1.016338673 1.438599464 1 13.84281997 -6.252648418 23.29048011 1.12117408 1.31153831 0.103145904 0.243538991 587.51803 1556548.79 0.083975731 0.0826081 5.59E-07 6.252648418 0.19036423 APGAPPRS(ph)PPQR ddPTM_HeLa_A485_30min_R1 5 APGAPPRSPPQR 12 1 H3BN50;Q15599-3 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 APGAPPRS(1)PPQR;APGAPPRS(1)PPQR;APGAPPRS(1)PPQR;APGAPPRS(1)PPQR;APGAPPRS(1)PPQR ;;;; 93.237 0.00088557 4319399000 1289316 1558483 1622270 1352936 1674147 1580527 1762644 1686493 1454640 1967425 TRUE FALSE FALSE 1576119.896 1740734.03 2222415.181 1426843.468 1507463.046 1663280.95 1386040.71 1272877.947 1746572.905 1476982.155 1.067121827 1.178574855 1.50470009 0.966053288 1.020637278 1.126134763 0.938427526 0.86180997 1.182528102 1 20.49422097 -5.320312324 24.99914018 1.009740827 1.242978748 0.399582419 0.132689898 252.7471887 107323.0787 0.037557746 0.055707158 4.78E-06 5.320312324 0.233237921 APGAPPRS(ph)PPQR ddPTM_HeLa_A486_30min_R1 5 APGAPPRSPPQR 12 1 H3BN50;Q15599-3 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 APGAPPRS(1)PPQR;APGAPPRS(1)PPQR;APGAPPRS(1)PPQR;APGAPPRS(1)PPQR;APGAPPRS(1)PPQR ;;;; 96.673 0.00070229 4065683000 1667661 1438965 1507588 704542 1700918 1841941 1776633 1626641 1601946 1866315 TRUE FALSE FALSE 1550766.576 1324936.173 2091366.448 1640209.382 1487573.004 1614701.047 1332100.632 1256290.354 1740803.969 1398977.576 1.108499952 0.947074632 1.494924925 1.172434362 1.063328697 1.154200807 0.952195843 0.898006069 1.244340151 1 20.41594141 -6.274080761 1.69766345 1.023537606 1.177459354 0.134668918 0.156299008 0.744335995 4.244675606 0.068820222 0.062126626 5.32E-07 6.274080761 0.153921748 APGAPPRS(ph)PPQRLDVSGPLR ddPTM_HeLa_A485_30min_R1 1 APGAPPRSPPQRLDVSGPLR 20 2 H3BN50 H3BN50 SLC9A3R2 1 0 APGAPPRS(0.999)PPQRLDVS(0.001)GPLR 47.018 0.0211 104470000 56884 67596 54663 56385 67958 88343 88855 98608 45019 70926 TRUE FALSE FALSE 69537.64955 75500.76419 74885.11842 59465.16978 61191.8629 92968.50288 69870.40337 74424.23339 54053.90036 53245.4535 1.305982858 1.417975794 1.406413384 1.116812157 1.149241088 1.746036455 1.31223229 1.397757527 1.015183397 1 15.70037072 -7.766329801 24.81281567 1.007591388 1.356868872 0.423948911 0.162710056 116.2546745 589810.7824 0.145400205 0.042245339 1.71E-08 7.766329801 0.349277484 APGASPGNPLS(ph)PSLSDKDR ddPTM_HeLa_A486_30min_R1 2 APGASPGNPLSPSLSDKDR 19 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 APGAS(0.005)PGNPLS(0.868)PS(0.056)LS(0.071)DKDR;APGASPGNPLS(0.904)PS(0.04)LS(0.055)DKDR ; 94.301 0.00022228 484070000 186691 152467 113819 82980 175768 188048 208755 205685 148374 274640 TRUE FALSE FALSE 173604.925 140384.9596 157892.765 193181.6336 153721.5385 164848.5497 156522.291 158855.0156 161235.1778 205868.3564 0.84328125 0.681916163 0.766959856 0.938374585 0.746698236 0.800747393 0.760302816 0.771633962 0.783195536 1 17.65136257 -9.95311229 3.944956355 1.00001491 0.786645955 0.500446205 0.063490868 19924001.93 40332388.71 4397.313575 0.015810192 1.11E-10 9.95311229 -0.213368955 APGASPGNPLSPS(ph)LSDKDR ddPTM_HeLa_A485_30min_R1 1 APGASPGNPLSPSLSDKDR 19 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 APGASPGNPLS(0.299)PS(0.427)LS(0.274)DKDR 78.354 0.0014899 243820000 123220 118330 80004 222410 133520 119990 201550 176200 91267 239050 TRUE FALSE FALSE 150629.8639 132167.6642 109600.8088 234559.6951 120226.28 126272.4909 158487.196 132986.6737 109583.4497 179459.2344 0.83935421 0.736477366 0.610728165 1.307036085 0.669936436 0.703627714 0.883137591 0.741041129 0.610631435 1 17.45329664 APGFVYAWLELISHR ddPTM_HeLa_A486_30min_R1 1 APGFVYAWLELISHR 15 0 H3BMZ2;A5YKK6-3;A5YKK6-2;A5YKK6 H3BMZ2 CNOT1 CCR4-NOT transcription complex subunit 1 0 0 88.552 0.003283 691400 1363.6 1324.2 1037.8 678.57 1641.9 1699.3 1131.9 1278.3 1535.9 949.55 FALSE FALSE TRUE 1268.018682 1219.265569 1439.663953 1579.745253 1435.957592 1489.657643 848.686648 987.2589951 1669.033049 711.7764995 1.781484332 1.712989359 2.02263485 2.219440027 2.017427652 2.092872755 1.192349914 1.38703511 2.344883611 1 9.47528049 -6.744884468 24.99556104 1.513320014 1.977865452 0.31560651 0.354661088 316.8813037 478445.8019 0.135833405 0.104913561 1.80E-07 6.744884468 0.464545438 APGPS(ph)PAK ddPTM_HeLa_A485_30min_R1 3 APGPSPAK 8 0 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 APGPS(1)PAK;APGPS(1)PAK;APGPS(1)PAK ;; 103.7 0.001603 885360000 1438370 1330130 957540 2070130 1299750 1379990 1851610 1368760 1199700 2518910 TRUE FALSE FALSE 1758330.444 1485677.133 1311773.893 2183215.96 1170342.326 1452244.143 1455998.397 1033069.464 1440468.786 1890992.094 0.929845476 0.78566015 0.693696127 1.154534684 0.618903871 0.767980018 0.769965354 0.546310832 0.761752939 1 20.8507119 APGPS(ph)PAK ddPTM_HeLa_A486_30min_R1 2 APGPSPAK 8 0 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 APGPS(1)PAK;APGPS(1)PAK ; 99.815 0.0022714 722900000 1121100 1187390 615290 492620 934110 1226560 1413770 1278690 1021590 1795490 TRUE FALSE FALSE 1042516.679 1093296.892 853546.766 1146844.256 816945.2136 1075239.498 1060029.793 987560.2006 1110142.244 1345887.617 0.774594153 0.812324059 0.634188735 0.852109969 0.606993632 0.798907341 0.787606468 0.733761265 0.824840224 1 20.36012652 -8.131758625 2.725702027 0.999950822 0.749756849 0.519469632 0.072824566 0.393464526 5.786098486 0.065642829 0.017655224 7.38E-09 8.131758625 -0.250193973 APGS(ph)PAAPR ddPTM_HeLa_A485_30min_R1 2 APGSPAAPR 9 0 Q5SPY9;Q9NQX5 Q5SPY9 NPDC1 Neural proliferation differentiation and control protein 1 1 0 APGS(1)PAAPR;APGS(1)PAAPR ; 94.692 0.0027992 2174600000 765390 1103140 957290 863600 1147520 931970 1198430 1237820 862230 1270660 TRUE FALSE FALSE 935648.3649 1232142.627 1311431.407 910776.2812 1033268.88 980766.5081 942375.6402 934242.7042 1035271.652 953907.8468 0.980858233 1.291678888 1.374798846 0.954784348 1.083195702 1.028156453 0.987910565 0.979384652 1.085295247 1 19.86349037 -5.27738791 24.99433741 1.018117841 1.223368691 0.448111052 0.10099978 689.3402147 1080323.712 0.028414614 0.042303269 5.28E-06 5.27738791 0.20525085 APGS(ph)PAAPR ddPTM_HeLa_A486_30min_R1 3 APGSPAAPR 9 0 Q5SPY9;Q9NQX5 Q5SPY9 NPDC1 Neural proliferation differentiation and control protein 1 1 0 APGS(1)PAAPR;APGS(1)PAAPR;APGS(1)PAAPR ;; 94.087 0.0028981 2290110000 823660 958990 920670 318749 1183160 934120 968340 979350 940950 1045090 TRUE FALSE FALSE 765925.6874 882996.1398 1277178.08 742063.7807 1034757.04 818877.7718 726051.0899 756373.3841 1022512.304 783392.6616 0.977703424 1.127143747 1.630316625 0.947243722 1.320866394 1.04529671 0.926803537 0.965509917 1.305235999 1 19.57937609 -6.348015748 9.463890335 1.038327308 1.206268621 0.122613616 0.202243891 0.917634398 94.96092557 0.071186746 0.062741808 4.49E-07 6.348015748 0.167941314 APGT(ph)PHS(ph)HTKPYVR ddPTM_HeLa_A485_30min_R1 1 APGTPHSHTKPYVR 14 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2 F8VUA6 RPL18 60S ribosomal protein L18 2 0 APGT(1)PHS(0.997)HT(0.003)KPYVR 92.264 0.030305 130550000 78018 93397 84868 75401 119940 89736 105210 132000 86377 116490 TRUE FALSE FALSE 95372.83494 104318.9667 116264.2049 79519.9657 107998.3525 94434.4382 82731.02401 99626.79303 103712.0716 87451.18684 1.090583655 1.192882229 1.329475437 0.909306878 1.234955824 1.079853134 0.946025171 1.139227455 1.185942414 1 16.41619034 -5.248933835 24.97978245 1.078583086 1.203170597 0.234605144 0.109906212 1230.578381 2458072.374 0.029647861 0.0508904 5.64E-06 5.248933835 0.124587511 APGT(ph)PHS(ph)HTKPYVR ddPTM_HeLa_A486_30min_R1 2 APGTPHSHTKPYVR 14 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2 F8VUA6 RPL18 60S ribosomal protein L18 2 0 APGT(1)PHS(0.998)HT(0.002)KPYVR;APGT(1)PHS(0.998)HT(0.002)KPYVR ; 135.09 0.00027905 172895000 92331 102370 80918 44964 129530 106880 118680 132500 93580 135050 TRUE FALSE FALSE 85859.0737 94257.82837 112251.6167 104678.4644 113283.1396 93694.23228 88985.00873 102332.6425 101691.5897 101232.601 0.848136597 0.931101517 1.108848489 1.034039068 1.119038121 0.925534179 0.879015336 1.010866475 1.004534002 1 16.62731445 -4.526708778 24.69551999 1.008469017 0.868877783 0.357917178 0.068640359 92.79451018 598331.4045 0.019124574 0.051129997 2.97E-05 4.526708778 -0.139591234 APGT(ph)PHSHTKPYVR ddPTM_HeLa_A486_30min_R1 1 APGTPHSHTKPYVR 14 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2 F8VUA6 RPL18 60S ribosomal protein L18 1 0 APGT(1)PHSHTKPYVR 114.01 0.00022738 425720000 603990 607690 582400 321870 757470 650320 766530 789390 610850 831740 TRUE FALSE FALSE 561653.42 559534.4312 807920.8772 749329.6264 662461.0495 570090.1304 574736.0865 609663.1293 663798.9698 623466.8903 0.900855248 0.897456529 1.295852097 1.201875574 1.062544074 0.914387178 0.921838987 0.977859673 1.06469001 1 19.24995342 -6.117843481 6.550105711 0.971532498 1.083679184 0.136999991 0.119336088 0.511202006 25.64853454 0.043764581 0.043877973 7.62E-07 6.117843481 0.112146687 APGTPHSHTKPYVR ddPTM_HeLa_A485_30min_R1 2 APGTPHSHTKPYVR 14 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2 F8VUA6 RPL18 60S ribosomal protein L18 0 0 ; ; 148.68 5.93E-08 585110000 228468 350980 329800 203438 373570 285270 326470 389250 294440 312270 FALSE FALSE TRUE 279289.9184 392024.0579 451806.7441 214551.3028 336376.0591 300206.2961 256717.0175 293785.8272 353531.4072 234426.8359 1.191373493 1.672266131 1.927282525 0.915216477 1.43488717 1.280596971 1.095083745 1.253209028 1.508067137 1 17.83877821 -5.26216249 24.9999953 1.230206611 1.604503244 0.350067999 0.239185192 74.31884781 2569455.789 0.065587179 0.104218676 5.47E-06 5.26216249 0.374296633 APGTPHSHTKPYVR ddPTM_HeLa_A486_30min_R1 2 APGTPHSHTKPYVR 14 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2 F8VUA6 RPL18 60S ribosomal protein L18 0 0 ; ; 117.7 0.00011835 803600000 393450 405110 387410 88467 545090 332860 364970 407950 349380 370920 FALSE FALSE TRUE 365871.1868 373007.6082 537425.5272 205955.6469 476719.7294 291795.1175 273650.6457 315068.6905 379664.5397 278039.2177 1.315897771 1.341564731 1.932912672 0.740743153 1.714577294 1.049474674 0.984215997 1.133180754 1.36550715 1 18.08492887 -6.311582509 24.99929404 1.107158168 1.397351008 0.197846825 0.304250885 644.0595226 321099.5311 0.103564995 0.091335829 4.88E-07 6.311582509 0.290192839 APGYPS(ph)SPVTTASGTTLR ddPTM_HeLa_A486_30min_R1 1 APGYPSSPVTTASGTTLR 18 0 H0YJG4;Q9HCK8-2;Q9HCK8;H0YJA4 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 APGYPS(0.5)S(0.5)PVTTASGTTLR 67.416 0.0076878 300960000 87339 96165 79339 39124 107430 85874 100470 89818 81429 95696 TRUE FALSE FALSE 81216.98712 88544.53517 110061.1856 91082.64922 93955.12766 75279.73898 75331.34334 69368.40211 88487.33128 71733.09872 1.132210772 1.23436094 1.534315226 1.269743687 1.309787662 1.049442173 1.050161567 0.967034791 1.233563485 1 16.13035133 -6.261076953 24.79550934 1.057362644 1.30442638 0.514154942 0.114568241 24.48284769 1675052.583 0.039827493 0.03750439 5.48E-07 6.261076953 0.247063736 APGYPSS(ph)PVTTASGTTLR ddPTM_HeLa_A485_30min_R1 4 APGYPSSPVTTASGTTLR 18 0 H0YJG4;Q9HCK8-2;Q9HCK8;H0YJA4 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 APGYPS(0.147)S(0.853)PVTTASGTTLR;APGYPS(0.027)S(0.938)PVT(0.017)T(0.017)AS(0.001)GTTLR;APGYPS(0.002)S(0.997)PVT(0.001)TASGTTLR;APGYPS(0.001)S(0.999)PVTTASGTTLR ;;; 195.5 9.16E-19 2624470000 938640 1263170 1378600 908950 1434090 1179990 1164050 1254500 1118110 1203590 TRUE FALSE FALSE 1147437.23 1410886.743 1888601.508 958603.6369 1291306.964 1241772.452 915341.2081 946831.908 1342504.421 903557.1634 1.269911054 1.561480336 2.090184866 1.06092196 1.429136989 1.37431532 1.013041836 1.047893754 1.485799101 1 19.78525635 -5.293586508 24.99984908 1.212404768 1.632621237 0.390934188 0.250756666 678.7478518 527840.1747 0.071462776 0.106005067 5.09E-06 5.293586508 0.42021647 APIDTS(ph)DVEEK ddPTM_HeLa_A485_30min_R1 5 APIDTSDVEEK 11 0 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 0 APIDT(0.325)S(0.675)DVEEK;APIDT(0.127)S(0.873)DVEEK;APIDT(0.057)S(0.943)DVEEK;APIDT(0.497)S(0.503)DVEEK;APIDT(0.017)S(0.983)DVEEK ;;;; 206.74 6.91E-15 8494470000 10511900 9962970 5962340 13300900 7297400 9031120 11803300 10037840 6456290 14594900 TRUE FALSE FALSE 12850235.89 11128052.68 8168057.68 14027494.49 6570845.233 9503975.478 9281428.531 7576044.001 7752008.182 10956660.03 1.172824187 1.015642782 0.745487919 1.280271036 0.599712432 0.867415385 0.847103817 0.691455606 0.707515626 1 23.38530475 -1.943656993 0.428154753 0.787473945 3.96179288 0.258345608 0.180713848 45.78679478 1.278781852 0.117356494 111.548459 0.011385261 1.943656993 3.174318935 APIDTS(ph)DVEEK ddPTM_HeLa_A486_30min_R1 5 APIDTSDVEEK 11 0 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 0 APIDT(0.081)S(0.919)DVEEK;APIDT(0.023)S(0.977)DVEEK;APIDT(0.129)S(0.871)DVEEK;APIDT(0.022)S(0.978)DVEEK;APIDT(0.007)S(0.993)DVEEK ;;;; 231.52 1.35E-18 9604650000 13668900 13047400 5618640 4675650 7218760 12500200 14250500 11444000 9254170 20895700 TRUE FALSE FALSE 12710780.7 12013476.51 7794327.88 10885149.49 6313315.809 10958052.42 10684874.17 8838451.021 10056328.91 15663280.71 0.811501813 0.766983413 0.497617838 0.694946971 0.403064717 0.699601355 0.682160677 0.564278403 0.642032094 1 23.90088308 -9.47438838 8.653766444 0.999999783 0.635150856 0.460360754 0.116734062 0 0 0.113468019 0.027520037 3.35E-10 9.47438838 -0.364848927 APIIAVTR ddPTM_HeLa_A485_30min_R1 4 APIIAVTR 8 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 165.11 1.73E-05 493530000 586342 560160 549000 662388 589140 617270 654180 679170 456670 619320 FALSE FALSE TRUE 716771.755 625665.8393 752097.9458 698572.5792 530483.153 649589.3027 514409.0988 512602.4926 548319.4802 464934.9217 1.541660395 1.34570627 1.617641331 1.502516904 1.140983669 1.39716178 1.106410972 1.102525254 1.179346731 1 18.82666927 -6.283508998 0.711847993 1.06733069 1.518402932 0.682548391 0.115154423 0.427013675 0.472298417 0.0850922 0.083875491 5.21E-07 6.283508998 0.451072242 APIIAVTR ddPTM_HeLa_A486_30min_R1 4 APIIAVTR 8 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 168.45 0.00089456 530155000 374413 401040 381506 243957 874154 399452 425154 434515 339645 421852 FALSE FALSE TRUE 348168.5822 369260.1298 529235.3403 567944.2249 764509.4542 350171.6736 318775.9724 335585.4199 369085.7021 316217.5134 1.101041427 1.167740919 1.673643356 1.796055566 2.417669553 1.107375963 1.00809082 1.061248684 1.167189312 1 18.27055775 -6.479771361 24.94376882 1.063306458 1.631546994 0.40568473 0.340768021 519.7112111 300727.2739 0.132102447 0.116494888 3.31E-07 6.479771361 0.568240537 APIRPDIVNFVHTNLR ddPTM_HeLa_A485_30min_R1 4 APIRPDIVNFVHTNLR 16 1 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 0 ;;; ;;; 239.58 6.67E-41 939552000 650132 833704 888287 744472 1024715 745232 864078 883668 851472 1070761 FALSE FALSE TRUE 794751.6205 931198.4305 1216901.326 785140.6203 922690.7766 784251.1952 679460.6764 666947.0375 1022354.62 803839.9886 0.988693809 1.158437554 1.51386015 0.976737449 1.147853789 0.975630979 0.845268568 0.829701243 1.271838469 1 19.61654882 -5.874481752 1.72150899 0.969966029 1.199571701 0.185088022 0.178042497 0.547670077 3.341789191 0.066748096 0.081223866 1.34E-06 5.874481752 0.229605672 APIRPDIVNFVHTNLR ddPTM_HeLa_A486_30min_R1 4 APIRPDIVNFVHTNLR 16 1 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 0 ;;; ;;; 243.9 4.43E-41 566653000 787265 1015276 903151 336299 1325585 861814 910630 956579 888757 932898 FALSE FALSE TRUE 732081.7889 934821.8322 1252875.254 782921.0676 1159317.769 755492.151 682780.7423 738786.8437 965795.1724 699294.2687 1.046886585 1.336807513 1.791628089 1.119587422 1.657839654 1.080363711 0.97638544 1.056474902 1.381099797 1 19.41554016 -6.303370794 24.52872144 1.094739354 1.394792883 0.284889305 0.230969109 521.3763619 304989.1123 0.080369897 0.070880225 4.97E-07 6.303370794 0.300053529 APIRPDIVNFVHTNLRK ddPTM_HeLa_A485_30min_R1 2 APIRPDIVNFVHTNLRK 17 2 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 0 ; ; 176.21 8.54E-13 456670000 382560 569490 432530 316620 539090 571560 689810 867420 393850 436020 FALSE FALSE TRUE 467659.1522 636086.9016 592540.8461 333916.1489 485416.3067 601485.9978 542426.4583 654683.8849 472892.0824 327328.2384 1.428716186 1.943269254 1.810234427 1.020126313 1.482964956 1.8375622 1.6571331 2.000083733 1.444702983 1 18.32037854 -8.014110776 24.08908585 0.999999971 1.648010875 0.343105262 0.27258605 570.2394107 973480.5487 0.274689117 0.070924425 9.68E-09 8.014110776 0.648010905 APIRPDIVNFVHTNLRK ddPTM_HeLa_A486_30min_R1 3 APIRPDIVNFVHTNLRK 17 2 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 0 ;; ;; 168.69 3.75E-12 539360000 626714 560267 482592 248908 835810 539618 695112 686205 439439 748431 FALSE FALSE TRUE 582784.585 515869.4025 669464.5467 579470.4031 730974.9162 473045.4176 521187.6255 529971.1012 477529.9263 561019.0061 1.038796509 0.91952215 1.19330101 1.032889076 1.302941448 0.843189647 0.929001727 0.944658016 0.851183153 1 19.09769012 -6.301355531 24.99994137 0.911109823 1.089337033 0.436712303 0.104194366 529.489889 331624.0971 0.036419662 0.032119531 5.00E-07 6.301355531 0.17822721 APKPDGPGGGPGGSHMGGNYGDDR ddPTM_HeLa_A485_30min_R1 2 APKPDGPGGGPGGSHMGGNYGDDR 24 1 H3BPE7;P35637-2;P35637 H3BPE7 FUS RNA-binding protein FUS 0 0 ; ; 242.73 1.95E-48 1597180000 596870 763300 571040 597750 649230 757660 888210 912760 637780 813710 FALSE FALSE TRUE 729641.6723 852561.2952 782291.459 630403.5689 584590.3816 797329.906 698436.6775 688904.1788 765776.5959 610867.0722 1.194436082 1.395657638 1.280624696 1.031981584 0.956984601 1.305242895 1.143352964 1.127748098 1.253589579 1 19.22049895 -5.142826851 6.599161545 1.124944196 1.304780592 0.337593124 0.110653283 0.281076136 14.1361164 0.030499964 0.053414698 7.20E-06 5.142826851 0.179836397 APKPDGPGGGPGGSHMGGNYGDDR ddPTM_HeLa_A486_30min_R1 2 APKPDGPGGGPGGSHMGGNYGDDR 24 1 H3BPE7;P35637-2;P35637 H3BPE7 FUS RNA-binding protein FUS 0 0 ; ; 188.22 4.07E-20 867050000 488190 482590 317840 145407 432030 433370 474020 449760 404380 551820 FALSE FALSE TRUE 453970.402 444347.8108 440916.1601 338514.8445 377840.7689 379905.2156 355415.1823 347359.4662 439431.984 413640.6803 1.097499409 1.074236244 1.065940032 0.818378996 0.913451667 0.918442585 0.859236529 0.839761374 1.062351952 1 18.65801855 -5.168058696 7.053225331 0.907115727 1.081041035 0.536256388 0.06930465 0.187347791 12.23136457 0.018240339 0.031833005 6.79E-06 5.168058696 0.173925308 APKPPTDGST(ph)SPTSTPSEDQEALGK ddPTM_HeLa_A486_30min_R1 1 APKPPTDGSTSPTSTPSEDQEALGK 25 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;Q8NHM5-5 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 APKPPT(0.029)DGS(0.24)T(0.35)S(0.35)PT(0.022)S(0.004)T(0.003)PSEDQEALGK 61.524 0.00079165 0 39994 42453 19180 17974 36397 46991 51240 47365 26408 52934 TRUE FALSE FALSE 37190.62713 39088.86967 26607.00966 41844.38036 31831.74887 41193.72819 38419.21004 36581.02347 28697.0667 39678.98186 0.937287838 0.985127839 0.670556764 1.054572935 0.802231997 1.03817503 0.968250904 0.921924449 0.723230924 1 15.27608739 APLHYLAPLLSNLSQRPAAR ddPTM_HeLa_A485_30min_R1 1 APLHYLAPLLSNLSQRPAAR 20 1 Q9BTY7 Q9BTY7 HGH1 Protein HGH1 homolog 0 0 80.638 0.0013299 13587000 7273.9 10300 10196 6033.4 10649 8735.9 12871 14474 8192.4 9399.8 FALSE FALSE TRUE 8891.95396 11504.4954 13967.92469 6362.989365 9588.748169 9193.298216 10121.0057 10924.22881 9836.539535 7056.60285 1.260089897 1.630316407 1.979412047 0.901707167 1.358833474 1.302793768 1.434260354 1.548086103 1.393948298 1 12.7847581 -11.22848941 1.608832921 4.27E-05 1.428934769 0.18996499 0.261979437 625750.6926 97472.21485 2266757.946 0.0733127 5.91E-12 11.22848941 1.428892042 APLHYLAPLLSNLSQRPAAR ddPTM_HeLa_A486_30min_R1 2 APLHYLAPLLSNLSQRPAAR 20 1 Q9BTY7 Q9BTY7 HGH1 Protein HGH1 homolog 0 0 ; ; 82.248 0.00059274 18972700 13442.7 13665.9 16774.8 5654.6 19719.5 13911.9 15350.5 15825.4 13967.9 16663.7 FALSE FALSE TRUE 12500.43615 12582.96431 23270.4518 13164.19457 17246.09643 12195.59122 11509.64254 12222.30189 15178.64882 12491.00106 1.000755351 1.007362361 1.86297733 1.05389428 1.380681689 0.976350187 0.921434758 0.97848858 1.215166723 1 13.60860148 -6.272475105 24.27620335 1.010890238 1.268958167 0.195571331 0.245774526 833.0390577 1832499.4 0.087361591 0.077806411 5.34E-07 6.272475105 0.258067928 APLKDEQEMRAS(ph)PK ddPTM_HeLa_A485_30min_R1 4 APLKDEQEMRASPK 14 2 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 APLKDEQEMRAS(1)PK;APLKDEQEMRAS(1)PK;APLKDEQEMRAS(1)PK;APLKDEQEMRAS(1)PK ;;; 100.77 0.00028733 1755040000 1621230 1716830 1124210 2682670 2743660 2862230 4543320 5433420 1813120 4642150 TRUE FALSE FALSE 1981867.02 1917598.334 1540102.061 2829217.469 2470491.577 3012091.937 3572602.566 4100865.226 2176996.553 3484947.437 0.568693519 0.550251724 0.441929782 0.811839352 0.70890354 0.864314883 1.025152497 1.176736608 0.624685621 1 21.73270547 -5.817360957 1.094550312 0.965275282 0.522062691 0.574909227 0.147938535 0.34841738 0.890566183 0.065069077 0.092037294 1.52E-06 5.817360957 -0.443212592 APLKDEQEMRAS(ph)PK ddPTM_HeLa_A486_30min_R1 3 APLKDEQEMRASPK 14 2 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 APLKDEQEMRAS(1)PK;APLKDEQEMRAS(1)PK;APLKDEQEMRAS(1)PK ;; 116.13 7.27E-05 1066280000 1579710 1243870 633820 1271210 1712570 1655470 2862120 2662190 925560 3178750 TRUE FALSE FALSE 1468980.487 1145301.211 879252.0783 2959441.123 1497763.502 1451234.943 2145987.304 2056067.452 1005788.286 2382770.31 0.616501087 0.480659511 0.369004127 1.242016954 0.62858073 0.609053645 0.900627012 0.862889488 0.422108787 1 21.18420846 APLKPYPVS(ph)PSDKVLIQEK ddPTM_HeLa_A485_30min_R1 2 APLKPYPVSPSDKVLIQEK 19 2 A0A0A0MSX9;P41252;J3KR24;Q5TCC6 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 1 0 APLKPYPVS(0.865)PS(0.135)DKVLIQEK;APLKPY(0.012)PVS(0.723)PS(0.266)DKVLIQEK ; 212.38 1.56E-26 1946870000 1420220 1056600 812491 2141950 1832780 1787640 2899000 2872710 1304050 2818620 TRUE FALSE FALSE 1736143.039 1180160.179 1113065.231 2258959.305 1650301.988 1881238.066 2279604.967 2168173.368 1565760.874 2115989.907 0.820487392 0.557734314 0.526025775 1.0675662 0.779919593 0.889058147 1.077323176 1.024661489 0.739966135 1 21.01290132 -5.258212258 24.99763506 0.937768611 0.627047669 0.539529859 0.129069587 214.4316876 1661003.676 0.035618139 0.058547717 5.52E-06 5.258212258 -0.310720942 APLKPYPVS(ph)PSDKVLIQEK ddPTM_HeLa_A486_30min_R1 2 APLKPYPVSPSDKVLIQEK 19 2 A0A0A0MSX9;P41252;J3KR24;Q5TCC6 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 1 0 APLKPYPVS(0.995)PS(0.005)DKVLIQEK;APLKPYPVS(0.5)PS(0.5)DKVLIQEK ; 183.42 1.82E-18 3985100000 2417200 2276100 1109590 1155050 2494600 3042600 3758200 3605600 1913850 3538400 TRUE FALSE FALSE 2247766.762 2095733.547 1539252.964 2689014.773 2181704.007 2667234.947 2817858.61 2784683.59 2079744.059 2652361.609 0.84745864 0.790138697 0.580332998 1.013819068 0.822551495 1.005607583 1.062396093 1.049888364 0.784110301 1 21.33884605 -5.281603836 24.94292868 0.964815102 0.744392952 0.477253055 0.107045302 669.8822709 828626.0251 0.030545396 0.045368986 5.23E-06 5.281603836 -0.22042215 APLNVQFNS(ph)PLPGDAVK ddPTM_HeLa_A485_30min_R1 1 APLNVQFNSPLPGDAVK 17 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 APLNVQFNS(1)PLPGDAVK 63.691 0.017308 32587000 44523 42085 36765 48330 60029 49490 60116 58955 42594 52527 TRUE FALSE FALSE 54426.98775 47006.47466 50365.90342 50970.14552 54052.30199 52081.21987 47271.7255 44496.19381 51142.2251 39432.98559 1.380240094 1.192059743 1.277253108 1.292576374 1.370738258 1.320752641 1.198786366 1.128400327 1.296940223 1 15.26711532 -8.863847054 0.400839587 0.960833311 1.304255049 0.58950073 0.071458507 2.75841512 0.657937593 0.266236471 0.05317727 1.37E-09 8.863847054 0.343421738 APLS(ph)PSLLIR ddPTM_HeLa_A486_30min_R1 1 APLSPSLLIR 10 0 O75807 O75807 PPP1R15A Protein phosphatase 1 regulatory subunit 15A 1 0 APLS(0.928)PS(0.072)LLIR 59.265 0.031445 9997100 18832 15089 14009 9659.8 20433 13070 15850 14972 15281 18017 TRUE FALSE FALSE 17511.97405 13893.29269 19433.65997 22488.50258 17870.10261 11457.55629 11884.16236 11563.20244 16605.56938 13505.42593 1.296662108 1.028719328 1.438952024 1.665145749 1.323179491 0.848366897 0.879954651 0.856189394 1.229547996 1 13.72125152 -6.22591444 8.632395125 0.948719145 1.35564679 0.540212905 0.17859199 0.299207192 68.87753327 0.063871592 0.063419147 5.94E-07 6.22591444 0.406927645 APLS(ph)PSLNSRPSPISATPPALVPETR ddPTM_HeLa_A485_30min_R1 3 APLSPSLNSRPSPISATPPALVPETR 26 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 APLS(0.776)PS(0.216)LNS(0.008)RPSPISATPPALVPETR;APLS(0.966)PS(0.034)LNSRPSPISATPPALVPETR;APLS(0.897)PS(0.102)LNS(0.001)RPSPISATPPALVPETR ;; 180.83 2.14E-20 1062750000 114174 125473 145925 103588 152564 129076 149241 166018 122657 114633 TRUE FALSE FALSE 139571.6124 140145.9759 199908.7299 109246.7501 137374.1925 135834.2198 117354.4412 125301.8252 147273.1348 86057.10276 1.621848841 1.628523055 2.322977692 1.26946814 1.596314401 1.578419624 1.363681061 1.456031184 1.711342005 1 16.39300665 -11.44956099 0.125487679 1.96E-11 1.959447137 0.356372928 0.261483006 75.62549835 1.179475755 24.60792649 2.691897743 3.55E-12 11.44956099 1.959447137 APLS(ph)PSLNSRPSPISATPPALVPETR ddPTM_HeLa_A486_30min_R1 2 APLSPSLNSRPSPISATPPALVPETR 26 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 APLS(0.975)PS(0.023)LNS(0.002)RPSPISATPPALVPETR;APLS(0.573)PS(0.421)LNS(0.005)RPS(0.001)PISATPPALVPETR ; 163.55 5.53E-14 494030000 91449 85382 100088 23122.2 113479 69039 95371 83513 74571 92130 TRUE FALSE FALSE 85038.89734 78616.01936 138844.754 53829.65013 99245.40567 60521.67012 71508.16707 64498.91298 81034.87432 69060.04833 1.231376163 1.138371913 2.010493149 0.779461518 1.437088564 0.876362985 1.035449131 0.933954067 1.173397301 1 16.07556372 -5.302674495 24.99996375 1.041249852 1.427911278 0.336793785 0.272943402 584.8575771 354585.3617 0.074466713 0.110453149 4.98E-06 5.302674495 0.386661426 APLSPS(ph)LNSRPSPISATPPALVPETR ddPTM_HeLa_A485_30min_R1 1 APLSPSLNSRPSPISATPPALVPETR 26 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 APLS(0.037)PS(0.747)LNS(0.192)RPS(0.024)PISATPPALVPETR 116.13 0.00011101 232270000 28718 34321 37539 22156 44450 33726 36563 51356 35210 32204 TRUE FALSE FALSE 35106.22002 38334.5424 51426.23823 23366.32618 40024.40193 35491.84121 28751.01636 38760.86048 42276.32403 24176.13547 1.452102221 1.585635655 2.127148828 0.966503774 1.65553349 1.468052711 1.189231273 1.603269494 1.748679978 1 14.56129603 -5.258749745 24.99997994 1.408745806 1.708029533 0.21540018 0.297454894 425.8492303 3958217.546 0.080559541 0.131794028 5.51E-06 5.258749745 0.299283727 APLSPS(ph)LNSRPSPISATPPALVPETR ddPTM_HeLa_A486_30min_R1 1 APLSPSLNSRPSPISATPPALVPETR 26 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 APLS(0.405)PS(0.577)LNS(0.018)RPS(0.001)PISATPPALVPETR 163.92 5.40E-14 175180000 20235 22511 19437 6097.5 26909 17707 21135 18937 16800 19569 TRUE FALSE FALSE 18816.63099 20727.14638 26963.52694 14195.28815 23533.8223 15522.49037 15846.79946 14625.45849 18256.23753 14668.79503 1.282765964 1.413009476 1.838155547 0.967720125 1.604345978 1.058198055 1.08030683 0.997045665 1.244562862 1 13.84046274 -6.28054729 24.34047054 1.076105747 1.418715354 0.386351325 0.217499206 630.1178327 802668.0849 0.074314346 0.065654292 5.24E-07 6.28054729 0.342609607 APLVSSTLPVATQSPT(ph)PPS(ph)PLFSVDFR ddPTM_HeLa_A485_30min_R1 1 APLVSSTLPVATQSPTPPSPLFSVDFR 27 0 Q9HBD1-6;Q9HBD1-4;Q9HBD1 Q9HBD1-6 RC3H2 Roquin-2 2 0 APLVSSTLPVATQS(0.15)PT(0.851)PPS(0.992)PLFS(0.007)VDFR 99.064 0.0027077 20442000 6898.4 10632 6039.7 5055.8 7815 7562 10553 8344.4 7753.5 5966.8 TRUE FALSE FALSE 8432.925281 11875.31991 8274.036363 5331.985552 7036.91116 7957.934627 8298.26534 6297.922816 9309.556331 4479.386571 1.882607171 2.651104058 1.847136038 1.190338335 1.570954203 1.776567952 1.852545032 1.405978858 2.078310542 1 12.12908546 -1.000000001 0.051092925 8.96E-12 4.995552446 0.306716201 0.370328751 635.492842 2.453854223 55.61829423 248.5654985 0.1 1.000000001 4.995552446 APLVSSTLPVATQSPT(ph)PPS(ph)PLFSVDFR ddPTM_HeLa_A486_30min_R1 1 APLVSSTLPVATQSPTPPSPLFSVDFR 27 0 Q9HBD1-6;Q9HBD1-4;Q9HBD1 Q9HBD1-6 RC3H2 Roquin-2 2 0 APLVSSTLPVAT(0.022)QS(0.016)PT(0.962)PPS(0.993)PLFS(0.005)VDFR 72.951 0.014665 11698000 6285.5 7356.8 6683 4852.4 10351 5888.1 7330.2 8215.4 5334.6 8533.8 TRUE FALSE FALSE 5844.918908 6773.820375 9270.836577 11296.63243 9052.681061 5161.686088 5496.106429 6344.932761 5797.007423 6396.880934 0.913713882 1.058925505 1.449274525 1.765959464 1.415171105 0.8069067 0.859185357 0.99187914 0.906224062 1 12.64315292 -6.259421758 24.97686604 0.908978135 1.337960729 0.45932935 0.220781396 183.1600641 2267412.801 0.084707442 0.080741147 5.50E-07 6.259421758 0.428982593 APLVSSTLPVATQSPTPPS(ph)PLFSVDFR ddPTM_HeLa_A485_30min_R1 1 APLVSSTLPVATQSPTPPSPLFSVDFR 27 0 Q9HBD1-6;Q9HBD1-4;Q9HBD1 Q9HBD1-6 RC3H2 Roquin-2 1 0 APLVSSTLPVATQS(0.001)PT(0.003)PPS(0.976)PLFS(0.02)VDFR 125.78 6.37E-06 19652000 11032 12489 11406 9168.6 15580 11086 12244 11503 10130 14181 TRUE FALSE FALSE 13486.03034 13949.47991 15625.55404 9669.457402 14028.8005 11666.44582 9627.969376 8681.871214 12162.99808 10645.93768 1.266777126 1.310310123 1.467748028 0.908276724 1.317760907 1.095858924 0.904379648 0.815510242 1.142501341 1 13.37801541 -5.934333495 0.830021864 0.953485177 1.330314456 0.430095094 0.15420287 0.588771169 0.895404094 0.088656535 0.120449507 1.16E-06 5.934333495 0.376829279 APPQTHLPSGASSGTGSASAT(ph)HGGGSPPGTR ddPTM_HeLa_A486_30min_R1 1 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;F6U341;X6REW1;A0A0G2JJM1;F6S6P2;F6TC96;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPSGASSGTGS(0.002)AS(0.176)AT(0.75)HGGGS(0.064)PPGT(0.008)R 61.89 0.014137 2001700000 70866 102750 152020 7150.1 162360 71030 82553 87184 122120 27573 TRUE FALSE FALSE 65898.65935 94607.71579 210886.2152 16645.79415 141995.2949 62267.04078 61897.36624 67334.10641 132705.4599 20668.54133 3.188355593 4.577377488 10.20324617 0.805368598 6.870116889 3.012648052 2.994762197 3.257806409 6.420649518 1 14.33514895 -6.044142228 1.294029739 3.5120825 5.323964478 0.07793098 2.62567291 1.25497533 4.346063699 1.14082906 1.243116512 9.03E-07 6.044142228 1.811881978 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTR ddPTM_HeLa_A485_30min_R1 7 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;F6U341;X6REW1;A0A0G2JJM1;F6S6P2;F6TC96;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPS(0.002)GAS(0.033)S(0.033)GT(0.143)GS(0.143)AS(0.143)AT(0.183)HGGGS(0.314)PPGT(0.006)R;APPQTHLPSGASSGTGSAS(0.001)AT(0.009)HGGGS(0.86)PPGT(0.129)R;APPQTHLPSGASSGTGSASATHGGGS(0.998)PPGT(0.002)R;APPQTHLPSGASSGTGSASAT(0.002)HGGGS(0.995)PPGT(0.004)R;APPQTHLPSGASSGTGSASAT(0.01)HGGGS(0.989)PPGT(0.001)R;APPQTHLPSGASSGTGS(0.004)AS(0.005)AT(0.11)HGGGS(0.872)PPGT(0.009)R;APPQTHLPSGAS(0.001)S(0.001)GT(0.01)GS(0.01)AS(0.084)AT(0.238)HGGGS(0.654)PPGT(0.001)R ;;;;;; 263.97 7.00E-64 30857330000 1523439 2550760 3473830 1029037 3682890 1722547 2274506 1895870 2741050 2127763 TRUE FALSE FALSE 1862322.75 2849049.193 4758944.275 1085250.686 3316208.54 1812736.897 1788539.212 1430904.91 3291153.593 1597350.843 1.165882097 1.783608909 2.979273024 0.679406588 2.076067731 1.134839541 1.119690906 0.895798764 2.060382419 1 20.60724979 -5.286265906 24.98334433 1.29687319 1.956990656 0.220522754 0.598245322 1169.414244 1176798.37 0.165882463 0.246164127 5.17E-06 5.286265906 0.660117466 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTR ddPTM_HeLa_A486_30min_R1 5 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;F6U341;X6REW1;A0A0G2JJM1;F6S6P2;F6TC96;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPSGAS(0.004)S(0.029)GT(0.038)GS(0.038)AS(0.029)AT(0.014)HGGGS(0.844)PPGT(0.004)R;APPQTHLPSGASSGTGSAS(0.003)AT(0.004)HGGGS(0.967)PPGT(0.025)R;APPQTHLPSGASSGTGSASAT(0.073)HGGGS(0.922)PPGT(0.005)R;APPQTHLPSGASSGTGSASATHGGGS(0.903)PPGT(0.097)R;APPQTHLPS(0.002)GAS(0.245)S(0.041)GT(0.041)GS(0.032)AS(0.167)AT(0.095)HGGGS(0.378)PPGTR ;;;; 206.79 2.16E-29 31058380000 1538240 1852440 2402130 94954.6 2348420 1140036 1303480 1377090 1930790 450221 TRUE FALSE FALSE 1430417.319 1705645.908 3332299.067 221059.1075 2053859.265 999389.9494 977335.5172 1063556.669 2098152.432 337482.7312 4.23849041 5.054024252 9.87398394 0.655023464 6.085820328 2.961306927 2.895957117 3.151440268 6.217066054 1 18.36445416 -5.271872142 24.99861641 3.458098797 6.255352196 0.295625704 2.183542402 929.1764571 2226457.766 0.59495263 0.893169659 5.35E-06 5.271872142 2.797253399 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTRGPGASVHDR ddPTM_HeLa_A485_30min_R1 4 APPQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDR 40 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;F6U341;X6REW1;A0A0G2JJM1;F6S6P2;F6TC96;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPSGASSGTGSASATHGGGS(0.998)PPGT(0.001)RGPGAS(0.001)VHDR;APPQTHLPSGASSGTGSASATHGGGS(0.999)PPGT(0.001)RGPGAS(0.001)VHDR;APPQTHLPSGASSGTGS(0.006)AS(0.134)AT(0.303)HGGGS(0.552)PPGT(0.003)RGPGAS(0.003)VHDR;APPQTHLPSGASSGTGSASATHGGGS(0.999)PPGTRGPGAS(0.001)VHDR ;;; 184.16 6.18E-22 9996130000 160994 733567 720792 51230.9 756477 394752 471247 712993 373965 113499.3 TRUE FALSE FALSE 196806.5599 819351.2795 987442.9555 54029.51434 681159.4937 415420.6043 370561.2287 538130.3488 449016.3453 85206.01331 2.309773128 9.616120361 11.58888812 0.634104475 7.994265513 4.875484584 4.349003249 6.315638156 5.269772964 1 16.37866763 -5.255688372 24.99997402 4.743716615 8.016046123 0.209041409 3.037733239 781.8188982 3398603.088 0.80903845 1.354191759 5.55E-06 5.255688372 3.272329508 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTRGPGASVHDR ddPTM_HeLa_A486_30min_R1 6 APPQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDR 40 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;F6U341;X6REW1;A0A0G2JJM1;F6S6P2;F6TC96;F6VEM6;F6X9W3;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPSGASSGTGSASAT(0.001)HGGGS(0.669)PPGT(0.165)RGPGAS(0.165)VHDR;APPQTHLPSGASSGTGSASATHGGGS(0.998)PPGT(0.001)RGPGAS(0.001)VHDR;APPQTHLPSGASSGTGSASATHGGGS(0.999)PPGTRGPGAS(0.001)VHDR;APPQTHLPSGASSGTGSASATHGGGS(0.999)PPGTRGPGAS(0.001)VHDR;APPQTHLPSGASSGTGSASAT(0.001)HGGGS(0.977)PPGT(0.01)RGPGAS(0.011)VHDR;APPQTHLPSGASSGTGSASAT(0.001)HGGGS(0.961)PPGT(0.015)RGPGAS(0.022)VHDR ;;;;; 253.78 2.63E-65 5476420000 357662 316561 517495 11841.9 721178 143950 260043 271804 295006 58261.1 TRUE FALSE FALSE 332591.7408 291475.5535 717882.923 27568.54166 630721.1305 126190.9126 194977.4909 209920.1626 320577.3576 43672.14134 7.615649944 6.674175905 16.43800604 0.631261505 14.44218468 2.889505957 4.464573638 4.806729329 7.340545889 1 15.41442565 -6.308488497 24.9998165 4.360959629 8.952637123 0.255456029 4.30045066 630.9194034 335240.7674 1.430855442 1.261899559 4.91E-07 6.308488497 4.591677494 APPS(ph)PGSLAAPGR ddPTM_HeLa_A485_30min_R1 1 APPSPGSLAAPGR 13 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 APPS(0.965)PGS(0.035)LAAPGR 94.688 0.0012421 117130000 93421 153000 152770 99855 167020 115560 139140 158450 143960 143740 TRUE FALSE FALSE 114202.1792 170892.0191 209285.9803 105309.8258 150390.9024 121610.5429 109411.6023 119589.8891 172851.4515 107908.2633 1.058326542 1.583678708 1.939480572 0.975919939 1.393692176 1.126980818 1.013931639 1.108255155 1.601837025 1 16.71944582 -5.284193336 24.99983236 1.179362927 1.532813749 0.264440511 0.269490751 1038.883435 1141421.772 0.075868205 0.112614022 5.20E-06 5.284193336 0.353450822 APPS(ph)PGSLAAPGR ddPTM_HeLa_A486_30min_R1 2 APPSPGSLAAPGR 13 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 APPS(0.741)PGS(0.259)LAAPGR;APPS(0.824)PGS(0.176)LAAPGR ; 107.53 0.00037949 204726000 185111 197982 184056 95740 262380 217893 320410 313940 160443 298950 TRUE FALSE FALSE 172135.6748 182293.1853 255327.4124 222887.5584 229469.8538 191011.577 240240.029 242462.7153 174350.3284 224090.9742 0.768150861 0.813478481 1.139391773 0.994629789 1.024003107 0.852384072 1.072064727 1.081983405 0.778033694 1 17.77372502 -4.615935293 7.936459837 0.994481499 0.779555763 0.391355481 0.101392548 0.207524708 15.08953816 0.025161385 0.067157567 2.42E-05 4.615935293 -0.214925736 APPS(ph)RTPQSGSAPTAK ddPTM_HeLa_A486_30min_R1 1 APPSRTPQSGSAPTAK 16 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 APPS(0.489)RT(0.489)PQS(0.02)GS(0.001)APTAK 56.529 0.0050138 0 43285 43193 46316 18941 68815 48217 60335 65864 37590 59148 TRUE FALSE FALSE 40250.94502 39770.22937 64250.79559 44095.60523 60183.58103 42268.47677 45238.54484 50868.205 40848.33147 44336.95581 0.907841873 0.896999549 1.449147656 0.994556447 1.35741347 0.95334639 1.020334933 1.147309374 0.921315655 1 15.4362221 APPSPGS(ph)LAAPGR ddPTM_HeLa_A485_30min_R1 1 APPSPGSLAAPGR 13 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 APPS(0.23)PGS(0.77)LAAPGR 84.892 0.0025369 140270000 62075 115990 158780 73119 110070 99916 113550 125260 95935 140890 TRUE FALSE FALSE 75883.36959 129554.0215 217519.3294 77113.30582 99111.04432 105147.4473 89289.11488 94539.7886 115188.2745 105768.7159 0.71744626 1.224880348 2.056556398 0.729074804 0.937054435 0.994126159 0.844192105 0.89383508 1.089058079 1 16.69055345 APQCLGK(ac)FIEIAAR ddPTM_HeLa_A485_30min_R1 2 APQCLGKFIEIAAR 14 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4;A0A1W2PPE9 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 ; APQCLGK(1)FIEIAAR;APQCLGK(1)FIEIAAR 160.22 1.76E-06 132394000 7443.7 7209.6 13261.2 10838.8 20938 20971.8 31546 65718 70221 73086 FALSE TRUE FALSE 9099.525385 8052.700005 18167.06972 11430.8962 18853.3392 22069.85102 24805.93939 49600.55746 84313.71059 54867.00525 0.165846948 0.146767624 0.331111014 0.208338256 0.343618886 0.402242676 0.452110322 0.904014302 1.536692411 1 15.74365121 -7.315537524 2.078488488 1.270562798 0.267587292 0.878618021 0.149860341 0.103076102 0.828957903 0.107470795 0.042029724 4.84E-08 7.315537524 -1.002975506 down APQCLGK(ac)FIEIAAR ddPTM_HeLa_A486_30min_R1 2 APQCLGKFIEIAAR 14 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4;A0A1W2PPE9 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 ; APQCLGK(1)FIEIAAR;APQCLGK(1)FIEIAAR 182.71 9.62E-10 221140000 22371.1 39684 45439 18901.1 50142 48318 45353 71173 62923 85560 FALSE TRUE FALSE 20803.00141 36539.29531 63034.1977 44002.71601 43852.7228 42357.01642 34005.1997 54968.4616 68377.2163 64135.2191 0.324361586 0.56972278 0.982832811 0.686092862 0.683754159 0.66043302 0.530211016 0.857071393 1.066141463 1 15.96882919 -7.509358074 4.092817496 1.023156028 0.650493329 0.516901823 0.156139239 0.18702016 7.265448626 0.111776967 0.043545398 3.09E-08 7.509358074 -0.372662699 APQMYEFHLPLS(ph)PEELLK ddPTM_HeLa_A485_30min_R1 2 APQMYEFHLPLSPEELLK 18 0 Q15021;E7EN77;F5GZK7;F5H431 Q15021 NCAPD2 Condensin complex subunit 1 1 0 APQMYEFHLPLS(1)PEELLK;APQMYEFHLPLS(1)PEELLK ; 80.412 0.0021533 88921000 72078 72969 60676 95386 103960 87068 113419 126439 79458 128414 TRUE FALSE FALSE 88111.50243 81502.0898 83122.57734 100596.6956 93609.37737 91626.74585 89186.1041 95429.637 95404.49177 96402.75308 0.913993632 0.845433218 0.862242775 1.043504386 0.971023901 0.950457771 0.925140634 0.989905723 0.989644888 1 16.55678673 -5.24014503 24.99490192 0.976898331 0.871044192 0.680937892 0.033603923 489.1427526 574145.7366 0.009426487 0.016306656 5.75E-06 5.24014503 -0.105854139 APQMYEFHLPLS(ph)PEELLK ddPTM_HeLa_A486_30min_R1 2 APQMYEFHLPLSPEELLK 18 0 Q15021;E7EN77;F5GZK7;F5H431 Q15021 NCAPD2 Condensin complex subunit 1 1 0 APQMYEFHLPLS(1)PEELLK;APQMYEFHLPLS(1)PEELLK ; 94.837 0.00040988 75606000 71254 76420 44145 38542 72020 74524 91177 85351 56766 93721 TRUE FALSE FALSE 66259.46256 70364.20088 61239.12624 89727.7238 62986.58004 65329.98658 68363.55023 65918.4405 61686.52259 70252.65158 0.943159597 1.001587831 0.871698432 1.277214764 0.896572281 0.929929122 0.973109893 0.938305374 0.878066823 1 16.10026506 APQQQPPPQQPPPPQPPPQQPPPPPS(ph)YSPAR ddPTM_HeLa_A485_30min_R1 1 APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR 31 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-5 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 APQQQPPPQQPPPPQPPPQQPPPPPS(0.477)Y(0.271)S(0.252)PAR 76.921 0.00087585 546400000 29399 32905 45470 28837 35003 28913 30839 20984 35541 32364 TRUE FALSE FALSE 35938.70612 36752.95351 62291.24516 30412.29229 31517.97842 30426.83997 24249.99572 15837.6411 42673.7527 24296.25042 1.479187344 1.512700638 2.563821335 1.251727809 1.297236317 1.252326571 0.998096221 0.651855362 1.756392528 1 14.56844606 -5.491919726 24.56738916 1.150861842 1.832948329 0.401196136 0.381493494 544.2210978 431863.8378 0.106872337 0.158287752 3.22E-06 5.491919726 0.682086487 APQQQPPPQQPPPPQPPPQQPPPPPSYS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR 31 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-5 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 APQQQPPPQQPPPPQPPPQQPPPPPS(0.334)Y(0.295)S(0.371)PAR;APQQQPPPQQPPPPQPPPQQPPPPPS(0.182)Y(0.16)S(0.658)PAR;APQQQPPPQQPPPPQPPPQQPPPPPS(0.085)Y(0.005)S(0.91)PAR ;; 110.67 6.53E-05 1492680000 106105 121955 148683 133796 140608 117326 120766 78114 125141 162543 TRUE FALSE FALSE 129707.6912 136216.5764 203687.0289 141104.9367 126608.5738 123469.0079 94963.35753 58956.41902 150255.6508 122024.0215 1.062968501 1.116309516 1.669237142 1.156370155 1.0375709 1.01184182 0.778234944 0.483154204 1.231361244 1 16.89680566 -6.056560025 1.698930348 0.846768122 1.273463858 0.326924694 0.236541325 0.39798168 2.310450231 0.094787888 0.100463882 8.78E-07 6.056560025 0.426695736 APQQQPPPQQPPPPQPPPQQPPPPPSYS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR 31 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;Q9BUJ2-5 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 APQQQPPPQQPPPPQPPPQQPPPPPS(0.07)Y(0.142)S(0.788)PAR 87.544 0.00024306 530300000 143380 158150 120070 33033 132000 115530 123160 121000 122830 135560 TRUE FALSE FALSE 133329.8024 145617.618 166564.3196 76902.4934 115443.3291 101277.0832 92344.06535 93450.94141 133477.0033 101614.8937 1.312108861 1.433034202 1.639172306 0.756803364 1.136086699 0.996675582 0.908765064 0.919657917 1.313557477 1 16.63275235 -5.256459521 24.99770124 1.002325981 1.458598036 0.641136126 0.156647084 257.0427048 1290289.084 0.041990243 0.06996094 5.54E-06 5.256459521 0.456272054 APQT(ph)SSSPPPVR ddPTM_HeLa_A485_30min_R1 2 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.382)S(0.235)S(0.235)S(0.148)PPPVR;APQT(0.465)S(0.234)S(0.234)S(0.066)PPPVR ; 90.697 0.0097966 293500000 460070 665280 634740 593070 780110 607960 785700 830330 620530 728880 TRUE FALSE FALSE 562410.9843 743078.7088 869556.7397 625467.9124 702439.5093 639791.8455 617828.7764 626690.2656 745064.6792 547183.63 1.0278286 1.358006103 1.58914977 1.143067661 1.283736338 1.169245223 1.129106835 1.145301561 1.361635543 1 19.06166554 APQTS(ph)S(ph)SPPPVR ddPTM_HeLa_A485_30min_R1 2 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 APQT(0.428)S(0.612)S(0.643)S(0.317)PPPVR;APQT(0.404)S(0.547)S(0.582)S(0.467)PPPVR ; 125.84 8.53E-05 1354900000 1340930 1828390 1878580 1489720 2057340 1687230 2080460 2053880 1705530 2043030 TRUE FALSE FALSE 1639215.252 2042204.306 2573544.916 1571099.631 1852504.006 1775570.754 1635952.725 1550162.71 2047814.227 1533740.22 1.068769816 1.33151904 1.677953595 1.02435837 1.207834274 1.157673725 1.066642645 1.010707478 1.335176714 1 20.54862271 -5.326379156 24.99999883 1.118751525 1.356634325 0.309486478 0.167461863 241.4860525 92964.67947 0.047011586 0.069729462 4.72E-06 5.326379156 0.237882801 APQTS(ph)S(ph)SPPPVR ddPTM_HeLa_A486_30min_R1 1 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 APQT(0.005)S(0.917)S(0.862)S(0.216)PPPVR 126.1 0.00017608 0 220410 264760 238450 74810 291620 240220 248910 264280 224050 256280 TRUE FALSE FALSE 204960.3972 243779.4534 330784.2259 174161.4607 255042.3004 210584.0988 186630.0853 204109.2132 243470.8344 192105.8199 1.066914044 1.268985258 1.721885501 0.906591278 1.327613606 1.096188022 0.971496259 1.062483236 1.267378753 1 17.5515417 -5.295748312 24.99992924 1.098043136 1.344234521 0.279948727 0.192383744 829.0382772 604094.4589 0.054208232 0.080407845 5.06E-06 5.295748312 0.246191385 APQTS(ph)SS(ph)PPPVR ddPTM_HeLa_A485_30min_R1 2 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 APQT(0.032)S(0.74)S(0.513)S(0.714)PPPVR;APQT(0.485)S(0.505)S(0.386)S(0.625)PPPVR ; 100.31 0.00057239 1411200000 1321870 1716960 1818080 1567430 2024810 1605660 1997020 2010670 1693460 2230360 TRUE FALSE FALSE 1615915.421 1917743.536 2490663.449 1653054.732 1823212.807 1689729.875 1570340.363 1517550.03 2033321.889 1674372.299 0.965087288 1.145350731 1.487520697 0.987268323 1.088893317 1.009172139 0.937868098 0.906339666 1.2143786 1 20.67518892 APQTS(ph)SS(ph)PPPVR ddPTM_HeLa_A486_30min_R1 2 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 APQT(0.116)S(0.536)S(0.483)S(0.865)PPPVR;APQT(0.09)S(0.528)S(0.435)S(0.948)PPPVR ; 143.05 3.26E-05 1379700000 765120 932490 826280 284180 1044290 785400 854770 954820 760390 818910 TRUE FALSE FALSE 711489.0391 858596.0963 1146237.745 661585.4017 913305.4106 688505.3334 640897.5052 737428.3296 826301.2174 613849.6058 1.159060839 1.39870758 1.867294096 1.077764644 1.487832528 1.121618922 1.044062746 1.201317591 1.34609717 1 19.22752571 -6.26914396 23.9984949 1.149041831 1.406430301 0.259638616 0.215370343 505.6642986 1575054.868 0.075633409 0.068012409 5.38E-07 6.26914396 0.257388469 APQTS(ph)SS(ph)PPPVRR ddPTM_HeLa_A485_30min_R1 1 APQTSSSPPPVRR 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 APQT(0.4)S(0.6)S(0.511)S(0.489)PPPVRR 60.949 0.003616 0 458300 670050 601690 517590 682470 541960 734480 772450 549070 676760 TRUE FALSE FALSE 560247.2539 748406.5188 824280.1694 545864.6311 614520.8905 570336.1876 577552.3479 583005.4263 659263.3126 508056.1868 1.102726959 1.47307825 1.622419313 1.07441784 1.209553011 1.122584868 1.136788337 1.147521557 1.297618905 1 18.95462853 -5.282775039 24.9878415 1.149245882 1.406775219 0.413449875 0.140619311 749.592299 877903.8913 0.039292556 0.058341941 5.21E-06 5.282775039 0.257529337 APQTS(ph)SSPPPVR ddPTM_HeLa_A485_30min_R1 1 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.157)S(0.372)S(0.372)S(0.099)PPPVR 110.92 0.00040374 385030000 144460 229440 247610 168510 266600 221580 253960 294390 213230 246660 TRUE FALSE FALSE 176594.6286 256271.0121 339211.2429 177715.2746 240056.3679 233181.5862 199699.3713 222190.3909 256023.3051 185172.2014 0.953677859 1.383960498 1.831869148 0.959729772 1.29639528 1.259268855 1.078452218 1.199912239 1.382622787 1 17.49850801 APQTSS(ph)SPPPVRR ddPTM_HeLa_A486_30min_R1 1 APQTSSSPPPVRR 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.004)S(0.045)S(0.498)S(0.452)PPPVRR 88.73 0.001014 486120000 96473 98780 110490 35631 138550 102970 118970 115290 93684 102010 TRUE FALSE FALSE 89710.74089 90952.31305 153274.687 82950.76869 121171.7671 90266.60832 89202.44766 89040.98376 101804.6046 76466.03203 1.173210359 1.18944727 2.004480721 1.084805455 1.584648292 1.180479828 1.166563052 1.164451475 1.331370307 1 16.22253139 -6.303348068 20.5967948 1.178724675 1.410472589 0.179227279 0.254948113 121.2160786 59572.29663 0.088407945 0.077972076 4.97E-07 6.303348068 0.231747913 APQTSSS(ph)PPPVR ddPTM_HeLa_A485_30min_R1 9 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.004)S(0.035)S(0.042)S(0.92)PPPVR;APQT(0.207)S(0.082)S(0.082)S(0.629)PPPVR;APQT(0.014)S(0.04)S(0.04)S(0.906)PPPVR;APQT(0.003)S(0.051)S(0.051)S(0.895)PPPVR;APQT(0.008)S(0.206)S(0.206)S(0.58)PPPVR;APQT(0.001)S(0.022)S(0.022)S(0.955)PPPVR;APQT(0.03)S(0.246)S(0.246)S(0.479)PPPVR;APQT(0.002)S(0.043)S(0.043)S(0.912)PPPVR;APQT(0.074)S(0.281)S(0.253)S(0.391)PPPVR ;;;;;;;; 167.59 1.94E-10 52978080000 6118140 8582880 9256080 6876220 10020650 8417460 9372240 10134500 8310510 9330060 TRUE FALSE FALSE 7479099.136 9586573.155 12680289.17 7251850.487 9022958.901 8858185.19 7369784.36 7648997.985 9978353.128 7004247.749 1.067794773 1.368679907 1.81037131 1.035350368 1.288212414 1.264687588 1.052187847 1.092051318 1.424614532 1 22.73979868 APQTSSS(ph)PPPVR ddPTM_HeLa_A486_30min_R1 9 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.023)S(0.187)S(0.047)S(0.744)PPPVR;APQT(0.036)S(0.19)S(0.19)S(0.583)PPPVR;APQT(0.015)S(0.039)S(0.039)S(0.908)PPPVR;APQT(0.004)S(0.043)S(0.043)S(0.911)PPPVR;APQT(0.031)S(0.095)S(0.095)S(0.778)PPPVR;APQT(0.009)S(0.158)S(0.158)S(0.676)PPPVR;APQTS(0.004)S(0.004)S(0.991)PPPVR;APQTS(0.019)S(0.049)S(0.932)PPPVR;APQT(0.006)S(0.143)S(0.143)S(0.709)PPPVR ;;;;;;;; 181.88 7.51E-13 50249900000 8310450 10035980 8977230 3128930 11184460 8831470 9786660 10362710 8110050 9616990 TRUE FALSE FALSE 7727930.37 9240692.394 12453453.87 7284307.167 9781600.736 7741933.023 7337934.155 8003347.149 8813035.664 7208833.108 1.0720085 1.281856891 1.727527006 1.010469664 1.356890996 1.07395093 1.01790873 1.11021396 1.222532903 1 22.78133432 -6.065933636 1.567675689 1.087960228 1.319177731 0.200803438 0.191301824 0.627111844 3.114718529 0.078682571 0.083053471 8.59E-07 6.065933636 0.231217504 APQTSSS(ph)PPPVRR ddPTM_HeLa_A485_30min_R1 4 APQTSSSPPPVRR 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.008)S(0.159)S(0.211)S(0.622)PPPVRR;APQT(0.006)S(0.006)S(0.074)S(0.914)PPPVRR;APQT(0.001)S(0.012)S(0.445)S(0.541)PPPVRR;APQTS(0.003)S(0.104)S(0.892)PPPVRR ;;; 164.7 2.01E-11 10613690000 529148 799231 776680 651210 881370 763177 854107 1003200 680847 803675 TRUE FALSE FALSE 646855.1471 892694.1131 1064006.252 686783.9533 793617.7081 803135.7676 671620.062 757163.627 817486.7478 603333.613 1.072135106 1.479602816 1.763545457 1.138315417 1.315387857 1.331163639 1.113181907 1.254966756 1.354949783 1 19.20259643 APQTSSS(ph)PPPVRR ddPTM_HeLa_A486_30min_R1 1 APQTSSSPPPVRR 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQTS(0.002)S(0.115)S(0.883)PPPVRR 70.038 0.0064556 6629900000 102380 149930 121860 58321 180250 130940 162470 159960 122210 133260 TRUE FALSE FALSE 95203.69069 138049.0008 169047.4555 135774.2354 157641.3642 114785.9541 121818.2876 123540.5999 132803.2612 99890.82862 0.953077395 1.381998755 1.692322087 1.35922624 1.578136516 1.149114045 1.219514236 1.236756183 1.329484028 1 16.6080646 -6.284403945 24.61854699 1.203804731 1.407101693 0.213725491 0.195273965 1115.916136 1196283.403 0.070019062 0.061789771 5.20E-07 6.284403945 0.203296962 APRPFGSVSS(ph)PK ddPTM_HeLa_A485_30min_R1 3 APRPFGSVSSPK 12 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 APRPFGSVS(0.036)S(0.964)PK;APRPFGSVS(0.035)S(0.965)PK;APRPFGSVS(0.133)S(0.867)PK ;; 113.4 0.00016035 2031360000 1969560 1579320 1304660 2896750 2288210 1809770 2341720 1989960 1594720 3768980 TRUE FALSE FALSE 2407681.827 1764007.736 1787308.025 3054992.118 2060387.778 1904526.759 1841392.392 1501919.19 1914765.676 2829442.649 0.850938551 0.623447072 0.631682012 1.079715158 0.728195632 0.673110218 0.65079686 0.530818036 0.676728923 1 21.43208646 -5.997240631 24.99998431 0.676515688 0.788774226 0.048763916 0.163421255 224.8092145 2036740.051 0.051076928 0.057593615 1.01E-06 5.997240631 0.112258538 APRPFGSVSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 APRPFGSVSSPK 12 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 APRPFGSVS(0.016)S(0.984)PK;APRPFGSVS(0.009)S(0.991)PK ; 115.58 0.00012892 2443800000 3405100 3662200 1824840 2083180 3320200 4096600 5191500 4571100 2669500 5802800 TRUE FALSE FALSE 3166420.074 3371993.934 2531466.919 4849748.318 2903749.556 3591203.143 3892531.79 3530360.316 2900894.409 4349741.11 0.727955985 0.775217156 0.581981055 1.114951027 0.667568364 0.825613077 0.894888153 0.811625388 0.666911969 1 22.05249811 -11.61045489 2.087007328 4.940283748 0.790352381 0.174118874 0.139943682 7059088.156 182303.3153 133134426.1 0.03635793 2.45E-12 11.61045489 -4.149931367 APRPSAPS(ph)PPPR ddPTM_HeLa_A485_30min_R1 6 APRPSAPSPPPR 12 1 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 0 APRPSAPS(1)PPPR;APRPSAPS(1)PPPR;APRPS(0.004)APS(0.996)PPPR;APRPS(0.016)APS(0.984)PPPR;APRPS(0.008)APS(0.992)PPPR;APRPS(0.004)APS(0.996)PPPR ;;;;; 120.59 5.70E-05 8728180000 620189 854559 835236 602896 903272 759319 845214 937507 760409 737548 TRUE FALSE FALSE 758147.9034 954492.2414 1144224.553 635830.6819 813339.0681 799075.7687 664627.1241 707581.9383 913016.1114 553690.8572 1.369262096 1.723872137 2.066540451 1.148349614 1.468940759 1.443180357 1.200357773 1.277936829 1.648963676 1 19.07872117 -5.27698533 24.99008595 1.331400117 1.720289656 0.391061879 0.232108969 820.9059014 1319602.597 0.064482559 0.096026988 5.28E-06 5.27698533 0.38888954 APRPSAPS(ph)PPPR ddPTM_HeLa_A486_30min_R1 6 APRPSAPSPPPR 12 1 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 0 APRPSAPS(1)PPPR;APRPS(0.005)APS(0.995)PPPR;APRPS(0.005)APS(0.995)PPPR;APRPS(0.001)APS(0.999)PPPR;APRPS(0.001)APS(0.999)PPPR;APRPS(0.011)APS(0.989)PPPR ;;;;; 107.74 0.00024166 7808020000 604694 615404 538294 172428 677282 527754 601127 580718 483478 625693 TRUE FALSE FALSE 562308.0732 566637.1458 746735.8528 401421.098 592330.9762 462645.0773 450718.6665 448501.1884 525386.2623 469015.4002 1.198911748 1.208141877 1.59213504 0.855880421 1.262924364 0.986417668 0.960989056 0.956261112 1.120189789 1 18.83927577 -5.274021483 24.99974078 1.024774148 1.320570806 0.497973324 0.14365957 634.2030004 1260114.833 0.039790589 0.059466341 5.32E-06 5.274021483 0.295796659 APRPTRPDK ddPTM_HeLa_A485_30min_R1 1 APRPTRPDK 9 2 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 0 71.349 0.011464 495940000 109990 151690 113900 146840 189860 159150 186030 190550 144880 195870 FALSE FALSE TRUE 134456.896 169428.826 156036.3498 154861.4974 170956.8718 167482.8479 146283.1708 143817.3137 173956.0871 147043.2137 0.914403954 1.152238323 1.061159817 1.053169973 1.162630137 1.139004267 0.994831159 0.978061551 1.183026967 1 17.16588068 -9.929751025 13.69918946 1 1.072255123 0.059345028 0.084594352 0 0 0.079908387 0.019380631 1.18E-10 9.929751025 0.072255123 APRPTRPDK ddPTM_HeLa_A486_30min_R1 2 APRPTRPDK 9 2 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 0 ; ; 88.681 0.0030901 844060000 349890 387380 245820 153591 563820 400280 448420 424210 335170 477740 FALSE FALSE TRUE 325364.5178 356682.598 341008.0873 357567.6101 493100.4382 350897.5233 336220.5731 327626.6434 364222.8055 358110.7944 0.908558253 0.996011859 0.952241855 0.998483195 1.376949385 0.979857432 0.938873048 0.914875085 1.017067374 1 18.45004648 -10.13670336 11.56648748 1.000063321 1.01194248 5.70E-05 0.127958736 0 0 0.131143742 0.031807029 7.30E-11 10.13670336 0.011879159 APS(ph)APPGTGALPPAAPSGR ddPTM_HeLa_A485_30min_R1 2 APSAPPGTGALPPAAPSGR 19 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 APS(0.999)APPGT(0.001)GALPPAAPSGR;APS(0.993)APPGT(0.007)GALPPAAPSGR ; 107.65 6.56E-05 176090000 108955 149134 127606 112842 158880 153969 163447 190929 129000 148305 TRUE FALSE FALSE 133191.6639 166573.924 174812.7695 119006.2727 143061.3493 162030.5788 128525.2132 144103.3634 154889.1167 111335.2929 1.196311254 1.496146637 1.570146941 1.068899804 1.284959564 1.455338865 1.154397765 1.294318807 1.391195126 1 16.76455147 -12.91684047 0.238749599 5.04E-09 1.361275098 0.286328649 0.15082231 128.3427966 2.051747222 62.83438255 0.251941337 1.21E-13 12.91684047 1.361275093 APS(ph)APPGTGALPPAAPSGR ddPTM_HeLa_A486_30min_R1 4 APSAPPGTGALPPAAPSGR 19 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 APS(1)APPGTGALPPAAPSGR;APS(1)APPGTGALPPAAPSGR;APS(1)APPGTGALPPAAPSGR;APS(1)APPGTGALPPAAPSGR ;;; 132.51 3.25E-09 443410000 197815 228403 170214 102221 273172 216560 266707 270943 203211 277970 TRUE FALSE FALSE 183949.19 210303.5145 236125.4193 237975.654 238908.2205 189843.029 199974.0877 209255.1935 220825.4931 208364.5027 0.88282403 1.009305864 1.133232466 1.142112264 1.146587914 0.911110225 0.959732032 1.004274676 1.059803806 1 17.66874999 -6.263119795 24.99971324 0.985548061 1.068157677 0.177393976 0.08120858 288.8609161 4297391.002 0.030524753 0.028321475 5.46E-07 6.263119795 0.082609615 APS(ph)AS(ph)PLALHASR ddPTM_HeLa_A485_30min_R1 1 APSASPLALHASR 13 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 APS(1)AS(1)PLALHASR 56.25 0.037309 233820000 99349 199030 240590 68869 240330 144890 180960 185080 178340 138690 TRUE FALSE FALSE 121448.8423 222304.8272 329594.2528 72631.13908 216401.9014 152476.2164 142296.4177 139688.8398 214131.2022 104117.1354 1.16646354 2.135141601 3.165610075 0.69759064 2.078446555 1.464468032 1.366695474 1.341650817 2.056637472 1 16.667848 -5.274169219 24.99919379 1.469488718 2.153678824 0.235633054 0.596464343 1144.739466 2248067.34 0.165305599 0.247029371 5.32E-06 5.274169219 0.684190107 APS(ph)AS(ph)PLALHASR ddPTM_HeLa_A486_30min_R1 2 APSASPLALHASR 13 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 APS(1)AS(1)PLALHASR;APS(1)AS(1)PLALHASR ; 70.235 0.010322 474140000 337210 544660 612710 54142 742830 378860 443340 423670 586470 189629 TRUE FALSE FALSE 313573.3204 501499.158 849967.7209 126045.3122 649657.3348 332120.1052 332411.6428 327209.5897 637305.6918 142144.6641 2.206015416 3.528089929 5.979596394 0.886739667 4.570395511 2.33649365 2.338544643 2.301947749 4.483500635 1 17.11700042 -6.03809046 1.155403313 2.595325545 3.548347589 0.062370087 1.508565623 1.518749261 4.262900477 0.696173268 0.773890785 9.16E-07 6.03809046 0.953022044 APS(ph)DS(ph)SLGTPSDGRPELR ddPTM_HeLa_A485_30min_R1 1 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 2 0 APS(0.913)DS(0.582)S(0.499)LGT(0.005)PS(0.001)DGRPELR 68.458 0.00074561 0 231040 227140 275220 254580 348920 266900 324510 308280 302000 359700 TRUE FALSE FALSE 282434.0509 253702.0471 377035.3309 268487.0608 314180.2997 280874.4713 255175.7875 232673.8466 362608.6299 270033.4098 1.045922618 0.939520955 1.396254379 0.99427349 1.16348677 1.040147112 0.944978578 0.861648367 1.342828764 1 18.04277839 -6.452818155 8.313532373 1.021161569 1.107842773 0.040305319 0.163251584 1.125948884 124.2702635 0.056782136 0.049909049 3.53E-07 6.452818155 0.086681204 APS(ph)DS(ph)SLGTPSDGRPELR ddPTM_HeLa_A486_30min_R1 2 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 2 0 APS(1)DS(0.583)S(0.417)LGTPSDGRPELR;APS(0.989)DS(0.478)S(0.368)LGT(0.007)PS(0.159)DGRPELR ; 178.56 1.29E-17 4252700000 2518610 2971970 2493140 1001300 3375190 2567570 2969830 3020770 2190990 2564060 TRUE FALSE FALSE 2342068.445 2736460.273 3458550.577 2331077.003 2951842.198 2250809.319 2226747.122 2333006.614 2380906.777 1922002.687 1.218556281 1.423754656 1.799451479 1.212837536 1.535815854 1.171075012 1.158555676 1.213841495 1.238763501 1 20.87417892 -6.273977199 24.14086477 1.169943978 1.444849502 0.417411778 0.165884196 508.3974996 978887.0228 0.057854116 0.051404432 5.32E-07 6.273977199 0.274905523 APS(ph)DSS(ph)LGTPSDGRPELR ddPTM_HeLa_A485_30min_R1 4 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 2 0 APS(0.913)DS(0.333)S(0.747)LGT(0.006)PS(0.001)DGRPELR;APS(0.826)DS(0.319)S(0.852)LGT(0.003)PSDGRPELR;APS(1)DS(0.311)S(0.689)LGTPSDGRPELR;APS(0.999)DS(0.262)S(0.739)LGTPSDGRPELR ;;; 206.62 8.51E-25 7394800000 4231200 4561920 4659080 3999620 5905790 4111000 5294370 4964320 4187780 4805240 TRUE FALSE FALSE 5172415.843 5095396.861 6382667.572 4218109.113 5317788.811 4326245.603 4163184.598 3746812.736 5028229.033 3607382.102 1.433841965 1.412491584 1.769335045 1.16929923 1.474140709 1.199275674 1.154073641 1.038651474 1.393872036 1 21.78252081 -6.067616356 1.085151681 1.141186011 1.500558408 0.440863875 0.166634044 0.466545921 1.163984858 0.080012441 0.087245071 8.56E-07 6.067616356 0.359372397 APS(ph)DSS(ph)LGTPSDGRPELR ddPTM_HeLa_A486_30min_R1 4 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 2 0 APS(1)DS(0.232)S(0.768)LGTPSDGRPELR;APS(0.974)DS(0.164)S(0.861)LGT(0.001)PSDGRPELR;APS(0.999)DS(0.236)S(0.764)LGTPSDGRPELR;APS(0.924)DS(0.445)S(0.607)LGT(0.017)PS(0.007)DGRPELR ;;; 207.37 7.79E-25 10224000000 3293230 3914280 3346880 1259370 4479800 3433780 3801860 3967240 3005670 3248230 TRUE FALSE FALSE 3062391.583 3604098.197 4642881.569 2931877.005 3917901.712 3010155.136 2850594.416 3063986.056 3266203.896 2434852.066 1.257732092 1.480212391 1.906843391 1.20412942 1.6090923 1.236278449 1.170746452 1.258386947 1.341438333 1 21.21540269 -6.324221129 7.579872035 1.214384651 1.497835621 0.349461349 0.197542514 0.359085138 38.8893159 0.069080476 0.060944572 4.74E-07 6.324221129 0.28345097 APS(ph)DSSLGTPSDGRPELR ddPTM_HeLa_A486_30min_R1 4 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APS(0.976)DS(0.012)S(0.012)LGTPSDGRPELR;APS(0.894)DS(0.082)S(0.025)LGTPSDGRPELR;APS(0.668)DS(0.166)S(0.166)LGTPSDGRPELR;APS(0.922)DS(0.062)S(0.016)LGTPSDGRPELR ;;; 170.14 1.33E-12 14343530000 2447980 2989930 2803680 874225 3787480 2726230 2893220 3160830 2766360 3198060 TRUE FALSE FALSE 2276389.243 2752997.058 3889339.981 2035239.981 3312418.942 2389895.461 2169305.755 2441178.009 3006150.312 2397244.96 0.949585579 1.148400394 1.622420756 0.848991244 1.381760728 0.996934189 0.904916181 1.018326475 1.254002141 1 21.19294591 -6.327350115 24.99941183 1.027861061 1.192962464 0.113852206 0.216261989 436.4335966 165533.944 0.07527765 0.066388658 4.71E-07 6.327350115 0.165101403 APS(ph)EIDPR ddPTM_HeLa_A485_30min_R1 1 APSEIDPR 8 0 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 1 0 APS(1)EIDPR 76.228 0.012053 476230000 227360 278750 306130 233090 366680 288380 346680 383440 276270 291440 TRUE FALSE FALSE 277935.4476 311347.3877 419380.2261 245823.1165 330172.0517 303479.1309 272608.9859 289400.7388 331714.8549 218789.3716 1.270333406 1.423046218 1.91682175 1.123560595 1.509086339 1.387083517 1.245988249 1.322736734 1.516137884 1 17.73918313 -12.55734737 0.216073533 5.46E-11 1.47736817 0.264544781 0.204382528 102.3039612 1.790374524 45.93379453 0.423711718 2.77E-13 12.55734737 1.47736817 APS(ph)EIDPR ddPTM_HeLa_A486_30min_R1 1 APSEIDPR 8 0 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 1 0 APS(1)EIDPR 99.815 0.0022714 658010000 702660 933410 856700 296910 1126600 823150 962660 1049000 772880 820530 TRUE FALSE FALSE 653407.1625 859443.1922 1188437.183 691221.485 985291.3229 721598.1222 721792.286 810165.5995 839873.8607 615063.9472 1.062340209 1.397323313 1.932217274 1.12382052 1.601933144 1.173208291 1.173523971 1.317205476 1.36550657 1 19.23037689 -6.283827719 24.59756665 1.223691384 1.43368138 0.163283836 0.244138533 1324.336048 1455012.952 0.085786471 0.075713184 5.20E-07 6.283827719 0.209989996 APS(ph)IDGKEELDLAEK ddPTM_HeLa_A485_30min_R1 1 APSIDGKEELDLAEK 15 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9;Q9H0E9-3;H0YAH7;H0YA84 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 APS(1)IDGKEELDLAEK 185.61 3.34E-18 136970000 253130 164490 107110 606090 269380 228840 389260 273710 232350 869160 TRUE FALSE FALSE 309437.8952 183725.6746 146734.4462 639199.162 242559.5813 240821.7085 306091.421 206582.1933 278980.5138 652494.4077 0.474238387 0.281574328 0.224882305 0.97962397 0.371742008 0.369078579 0.469109647 0.316603776 0.427560007 1 19.31560601 -10.25437543 5.62519208 1.000036186 0.433995695 0.42458994 0.197341175 9.05E-05 1.20E-05 0.193065302 0.046822231 5.57E-11 10.25437543 -0.566040491 APS(ph)IDGKEELDLAEK ddPTM_HeLa_A486_30min_R1 4 APSIDGKEELDLAEK 15 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9;Q9H0E9-3;H0YAH7;H0YA84 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 APS(1)IDGKEELDLAEK;APS(1)IDGKEELDLAEK;APS(1)IDGKEELDLAEK;APS(1)IDGKEELDLAEK ;;; 211.75 3.28E-26 1196070000 1442360 1413650 566105 1112460 1092250 2093620 2704480 2345400 1306980 2977630 TRUE FALSE FALSE 1341258.012 1301627.226 785316.0168 2589863.101 955249.8202 1835330.451 2027790.499 1811403.62 1420270.079 2232012.067 0.6009188 0.583163167 0.351842191 1.160326657 0.427976996 0.822276222 0.908503376 0.811556374 0.63631828 1 21.0899134 -3.443691676 0.149637928 1.011758662 3.32E-18 0.210563206 0.21514434 53.72563805 1.053805244 0.939573718 10.73554432 0.000360005 3.443691676 -1.011758662 APS(ph)LTDLVK ddPTM_HeLa_A485_30min_R1 6 APSLTDLVK 9 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 APS(0.999)LT(0.001)DLVK;APS(1)LTDLVK;APS(1)LTDLVK;APS(1)LTDLVK;APS(0.999)LT(0.001)DLVK;APS(0.999)LT(0.001)DLVK ;;;;; 228.84 1.83E-12 1519103000 1701973 1719430 1431382 1964120 2262440 1856583 2623900 2607560 1769192 2828880 TRUE FALSE FALSE 2080571.022 1920502.381 1960909.767 2071414.902 2037183.53 1953790.815 2063282.33 1968051.822 2124252.606 2123692.278 0.979695149 0.904322345 0.923349295 0.975383733 0.959264933 0.919997137 0.971554284 0.926712331 1.000263846 1 21.0181433 -7.772866998 24.96583896 1.000131985 0.944490312 0.442316427 0.02474055 218.2284367 476746.4689 0.022695299 0.006064244 1.69E-08 7.772866998 -0.055641673 APS(ph)LTDLVK ddPTM_HeLa_A486_30min_R1 4 APSLTDLVK 9 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 APS(0.998)LT(0.002)DLVK;APS(0.999)LT(0.001)DLVK;APS(1)LTDLVK;APS(1)LTDLVK ;;; 203.02 7.50E-10 992487000 1752040 1818060 1154342 752575 1810580 1811900 2232970 2242580 1418100 2001090 TRUE FALSE FALSE 1629231.044 1673990.304 1601334.137 1752032.633 1583480.173 1588366.2 1674257.288 1731993.489 1541022.05 1500004.039 1.086151104 1.115990531 1.067553217 1.16801861 1.055650606 1.058907949 1.11616852 1.154659217 1.027345267 1 20.51653495 -7.931469289 6.57896332 1.000297319 1.101527788 0.501334947 0.036058091 0.149303898 10.3743017 0.034621261 0.008974657 1.17E-08 7.931469289 0.101230469 APS(ph)LTNDEVEEFR ddPTM_HeLa_A485_30min_R1 1 APSLTNDEVEEFR 13 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 APS(1)LTNDEVEEFR 100.45 0.00077201 70321000 14792 15042 20689 17655 24435 18142 21117 19777 16430 24691 TRUE FALSE FALSE 18082.42937 16801.03105 28342.72204 18619.44795 22002.1656 19091.88707 16605.18044 14926.65974 19727.3503 18535.9881 0.975530911 0.906400617 1.529064536 1.004502584 1.18699718 1.029990252 0.895834651 0.805279959 1.064272926 1 14.1780414 -6.541234254 4.207866644 0.926736855 1.124438255 0.193804474 0.170886789 0.332485528 13.83392263 0.067101192 0.053207662 2.88E-07 6.541234254 0.1977014 APS(ph)LTNDEVEEFR ddPTM_HeLa_A486_30min_R1 3 APSLTNDEVEEFR 13 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 APS(1)LTNDEVEEFR;APS(1)LTNDEVEEFR;APS(1)LTNDEVEEFR ;; 186.77 2.84E-17 351509000 99429 106394 97349 41851.9 148917 100459 122632 112523 101328 108781 TRUE FALSE FALSE 92459.54055 97962.95196 135045.1399 97433.33828 130238.4413 88065.38997 91948.17653 86903.96926 110111.1926 81541.52955 1.133895097 1.201387226 1.656151664 1.194892208 1.597203805 1.080006599 1.127623887 1.065763296 1.350369477 1 16.3152474 -6.304954399 24.99789187 1.129042254 1.355723624 0.296106227 0.178749128 625.1321094 359115.1535 0.061829825 0.054529053 4.96E-07 6.304954399 0.22668137 APS(ph)PAPRPVPGSPAR ddPTM_HeLa_A485_30min_R1 3 APSPAPRPVPGSPAR 15 1 Q5TZA2;Q5TZA2-2 Q5TZA2 CROCC Rootletin 1 0 APS(1)PAPRPVPGSPAR;APS(1)PAPRPVPGSPAR;APS(1)PAPRPVPGSPAR ;; 102.58 0.00021356 1178580000 434280 635570 630200 551110 653440 660020 734560 822280 589140 696380 TRUE FALSE FALSE 530884.0878 709894.3828 863337.2048 581215.7438 588381.2192 694577.6266 577615.2552 620614.5407 707374.9941 522785.2819 1.015491648 1.357908127 1.651418345 1.111767611 1.125473956 1.328609757 1.104880484 1.187130859 1.353088961 1 18.995859 APS(ph)PAPRPVPGSPAR ddPTM_HeLa_A486_30min_R1 1 APSPAPRPVPGSPAR 15 1 Q5TZA2;Q5TZA2-2 Q5TZA2 CROCC Rootletin 1 0 APS(1)PAPRPVPGSPAR 103.88 0.00017505 336730000 175520 190930 168460 65448 229400 162260 190590 188720 154490 200240 TRUE FALSE FALSE 163216.9544 175800.0114 233692.2235 152366.2516 200626.5129 142242.0109 142902.3661 145752.5757 167881.3176 150098.6007 1.087398241 1.171230183 1.556924731 1.015107742 1.336631468 0.947657142 0.952056618 0.971045533 1.118473569 1 17.195551 -6.26950246 24.97423534 0.993175038 1.235841098 0.399748861 0.14428621 620.992384 1923428.343 0.049833393 0.044711476 5.38E-07 6.26950246 0.24266606 APS(ph)PAPSSVPLGSEKPSNVSQDR ddPTM_HeLa_A485_30min_R1 4 APSPAPSSVPLGSEKPSNVSQDR 23 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 APS(0.98)PAPS(0.016)S(0.004)VPLGSEKPSNVSQDR;APS(0.995)PAPS(0.002)S(0.002)VPLGSEKPSNVSQDR;APS(0.999)PAPS(0.001)SVPLGSEKPSNVSQDR;APS(0.976)PAPS(0.021)S(0.004)VPLGSEKPSNVSQDR ;;; 243.75 3.44E-49 13071700000 2028210 2379770 1905880 2053400 2546260 2345850 2818220 2678960 1879580 2801960 TRUE FALSE FALSE 2479378.317 2658063.4 2610944.322 2165572.043 2292745.414 2468675.079 2216084.274 2021940.86 2256794.465 2103482.938 1.178701416 1.263648662 1.241248158 1.029517284 1.08997576 1.173613075 1.053530901 0.961234733 1.072884607 1 21.00434869 -5.475515473 0.438024442 1.00299298 1.288534111 0.575238033 0.063573423 1.471228512 0.456120865 0.059574352 0.19840915 3.35E-06 5.475515473 0.285541131 APS(ph)PAPSSVPLGSEKPSNVSQDR ddPTM_HeLa_A486_30min_R1 3 APSPAPSSVPLGSEKPSNVSQDR 23 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 APS(0.994)PAPS(0.003)S(0.003)VPLGSEKPSNVSQDR;APS(0.983)PAPS(0.014)S(0.003)VPLGSEKPSNVSQDR;APS(0.989)PAPS(0.008)S(0.003)VPLGSEKPSNVSQDR ;; 218.22 2.99E-38 7588000000 2138610 2540610 1938470 842814 2877250 2120130 2627430 2405240 1762280 2146460 TRUE FALSE FALSE 1988704.483 2339282.811 2689097.498 1962113.585 2516358.476 1858569.917 1970019.224 1857619.358 1915035.849 1608972.445 1.236009037 1.453898616 1.671313581 1.219482404 1.563953742 1.155128494 1.224395875 1.154537708 1.1902229 1 20.61770819 -6.279811542 23.95774098 1.159486732 1.432148146 0.514414291 0.137615625 410.6421206 535485.0022 0.047091095 0.041620656 5.25E-07 6.279811542 0.272661414 APS(ph)PAPSSVPLGSEKPSNVSQDRK ddPTM_HeLa_A486_30min_R1 1 APSPAPSSVPLGSEKPSNVSQDRK 24 2 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 APS(0.962)PAPS(0.032)S(0.006)VPLGSEKPSNVSQDRK 110.83 0.0001167 182370000 149340 171190 90029 70836 164210 162020 188870 164660 111300 186220 TRUE FALSE FALSE 138872.0372 157624.2809 124890.6399 164909.7879 143613.2506 142031.6197 141612.7283 127170.5125 120947.5736 139589.2999 0.994861621 1.129200311 0.894700668 1.181392757 1.028827071 1.017496468 1.014495584 0.911033386 0.866453043 1 17.09082883 -7.139042523 2.901887189 0.915527834 1.043549724 0.298690235 0.078406963 0.309547188 4.969198806 0.041425296 0.021302224 7.26E-08 7.139042523 0.12802189 APS(ph)PARPFLK ddPTM_HeLa_A485_30min_R1 3 APSPARPFLK 10 1 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 APS(1)PARPFLK;APS(1)PARPFLK;APS(1)PARPFLK ;; 122.42 7.46E-05 4217100000 1790125 1940460 1642270 1821690 2579970 2026140 2561300 2579660 1955530 2425930 TRUE FALSE FALSE 2188332.13 2167379.917 2249814.014 1921204.312 2323099.128 2132225.557 2014057.331 1946994.34 2347986.934 1821190.297 1.201594437 1.190089757 1.235353613 1.054916839 1.275593842 1.170786799 1.105901637 1.069077923 1.289259523 1 20.79645025 -14 0.235467313 0.060241171 1.190586505 0.307199584 0.077336749 206.1248951 2.061259874 92.80756233 0.124580926 1.00E-14 14 1.130345335 APS(ph)PARPFLK ddPTM_HeLa_A486_30min_R1 3 APSPARPFLK 10 1 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 APS(1)PARPFLK;APS(1)PARPFLK;APS(1)PARPFLK ;; 141.38 3.35E-06 4836300000 2922170 3539450 2491650 1188740 3862150 3235000 3787930 3840550 2683130 3218460 TRUE FALSE FALSE 2717340.973 3258971.092 3456483.609 2767446.796 3377723.134 2835898.591 2840149.849 2966140.604 2915705.869 2412536.667 1.126341833 1.350848315 1.432717544 1.147110771 1.400071211 1.175484141 1.177246293 1.229469647 1.208564375 1 21.20211944 -8.93936821 0.326066965 0.93913819 1.301414369 0.389525213 0.099164563 4.896806426 0.788791859 0.512266147 0.103835261 1.15E-09 8.93936821 0.362276179 APS(ph)PARPK ddPTM_HeLa_A485_30min_R1 5 APSPARPK 8 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 APS(1)PARPK;APS(1)PARPK;APS(1)PARPK;APS(1)PARPK;APS(1)PARPK ;;;; 89.171 0.0019903 1449470000 2539423 2508570 2215495 3109840 3384750 2931580 3773910 3818000 2932790 4128060 TRUE FALSE FALSE 3104308.885 2801925.44 3035098.795 3279722.685 3047752.405 3085072.996 2967583.298 2881629.514 3521374.052 3099010.613 1.001709666 0.904135477 0.979376702 1.058312828 0.983459815 0.995502559 0.957590557 0.929854677 1.136289768 1 21.56337627 -3.448056296 0.247824183 1.016144756 0.885764738 0.06725766 0.059782979 48.90791495 1.852327015 0.085821584 2.082923224 0.000356405 3.448056296 -0.130380018 APS(ph)PARPK ddPTM_HeLa_A486_30min_R1 4 APSPARPK 8 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 APS(1)PARPK;APS(1)PARPK;APS(1)PARPK;APS(1)PARPK ;;; 107.83 0.00064317 1660720000 2739640 3037010 1974560 1155400 2970410 2969170 3516000 3502980 2436790 3408360 TRUE FALSE FALSE 2547605.384 2796346.267 2739162.513 2689829.591 2597833.48 2602863.994 2636259.612 2705427.924 2648012.919 2554884.471 0.997150913 1.094509869 1.072127739 1.052818482 1.016810548 1.018779527 1.03185081 1.058923781 1.036451139 1 21.28482663 -5.621385749 6.247610123 1.030003579 1.059186424 0.182223626 0.027109252 0.348241595 18.70855191 0.008007791 0.010370709 2.39E-06 5.621385749 0.029182845 APS(ph)PASFQR ddPTM_HeLa_A485_30min_R1 2 APSPASFQR 9 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 APS(0.999)PAS(0.001)FQR;APS(0.996)PAS(0.004)FQR ; 119.34 0.00049436 196700000 298330 395480 388700 321880 499970 388620 472350 496150 385570 452020 TRUE FALSE FALSE 364692.4793 441727.9458 532496.3052 339463.4894 450191.2313 408967.5423 371428.5638 374468.4346 462950.3623 339339.7328 1.074711989 1.301727747 1.569212956 1.000364698 1.326668196 1.205186139 1.094562551 1.103520744 1.36426807 1 18.37237084 -6.140552355 1.128647049 1.151046103 1.277770786 0.07808133 0.167833417 1.323772319 3.529304589 0.083766768 0.084634072 7.24E-07 6.140552355 0.126724683 APS(ph)PASFQR ddPTM_HeLa_A486_30min_R1 2 APSPASFQR 9 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 APS(0.998)PAS(0.002)FQR;APS(0.999)PAS(0.001)FQR ; 117.99 0.00055903 501840000 276920 348740 279980 98656 363030 313940 316580 341890 272120 316260 TRUE FALSE FALSE 257509.338 321104.5723 388395.7541 229676.1538 317495.3923 275209.2747 237368.3356 264049.1104 295707.5807 237066.4375 1.086232791 1.354491913 1.638341379 0.968826107 1.339267573 1.160895138 1.001273475 1.113819034 1.247361642 1 17.8549319 -5.881006563 1.203099369 1.106134062 1.324613237 0.183091088 0.178876538 0.783358497 2.395185667 0.077746152 0.100164783 1.32E-06 5.881006563 0.218479175 APS(ph)PEPAAPR ddPTM_HeLa_A485_30min_R1 5 APSPEPAAPR 10 0 P20749 P20749 BCL3 B-cell lymphoma 3 protein 1 0 APS(1)PEPAAPR;APS(1)PEPAAPR;APS(1)PEPAAPR;APS(1)PEPAAPR;APS(1)PEPAAPR ;;;; 119.34 0.00030167 3824440000 2306779 2220084 2795998 2437909 3010976 2649802 3355873 2851937 2512201 3417141 TRUE FALSE FALSE 2819914.03 2479703.512 3830354.011 2571085.796 2711192.657 2788541.535 2638863.319 2152494.979 3016376.697 2565310.637 1.099248563 0.966628944 1.493134577 1.002251251 1.056867195 1.087019052 1.028672037 0.839077712 1.17583292 1 21.2907021 APS(ph)PEPAAPR ddPTM_HeLa_A486_30min_R1 4 APSPEPAAPR 10 0 P20749 P20749 BCL3 B-cell lymphoma 3 protein 1 0 APS(1)PEPAAPR;APS(1)PEPAAPR;APS(1)PEPAAPR;APS(1)PEPAAPR ;;; 138.76 2.44E-05 3465370000 1873560 2920350 2666300 871530 3393970 2803960 3096630 2944400 2728200 2736990 TRUE FALSE FALSE 1742233.119 2688930.83 3698762.766 2028965.885 2968266.635 2458035.924 2321820.421 2274024.396 2964682.573 2051629.889 0.849194647 1.310631535 1.802841139 0.988953171 1.446784652 1.198089352 1.131695553 1.108398941 1.445037718 1 20.96833906 -6.493415537 23.58648235 1.17811281 1.297125777 0.035819518 0.261520272 1312.660753 1050839.385 0.092065428 0.08102212 3.21E-07 6.493415537 0.119012966 APS(ph)PGAYK ddPTM_HeLa_A485_30min_R1 1 APSPGAYK 8 0 P54259 P54259 ATN1 Atrophin-1 1 0 APS(1)PGAYK 79.974 0.0062729 0 291920 287520 269780 396440 394780 329560 424540 433060 337270 544530 TRUE FALSE FALSE 356856.5969 321142.9629 369582.8485 418096.5134 355474.317 346815.252 333833.5608 326851.356 404956.9954 408788.6923 0.872961027 0.785596493 0.904092641 1.022769272 0.869579623 0.848397371 0.816640888 0.799560658 0.990626705 1 18.64099576 -7.786268285 22.16043709 0.995314648 0.86686239 0.405765842 0.063070105 80.97013336 72259.90725 0.066346927 0.017187674 1.64E-08 7.786268285 -0.128452258 APS(ph)PGAYK ddPTM_HeLa_A486_30min_R1 2 APSPGAYK 8 0 P54259 P54259 ATN1 Atrophin-1 1 0 APS(1)PGAYK;APS(1)PGAYK ; 106.2 0.0014935 0 704930 861380 535830 315700 840670 856490 973890 965580 750460 962790 TRUE FALSE FALSE 655518.0473 793121.1117 743317.726 734965.5546 735225.3297 750824.972 730212.4212 745738.5125 815510.477 721701.1173 0.908295736 1.098960626 1.0299523 1.018379405 1.018739354 1.040354454 1.011793392 1.033306579 1.12998367 1 19.46104196 -7.5444396 24.97914889 1.070542959 1.022532557 0.104115381 0.052839803 492.3919898 570445.4621 0.032856832 0.01242147 2.85E-08 7.5444396 -0.048010402 APS(ph)PGDYK ddPTM_HeLa_A486_30min_R1 2 APSPGDYK 8 0 P55198 P55198 MLLT6 Protein AF-17 1 0 APS(1)PGDYK;APS(1)PGDYK ; 81.338 0.0058668 356120000 405010 538870 304440 227200 466180 574330 650190 607420 401010 626370 TRUE FALSE FALSE 376620.8905 496167.9787 422327.3212 528933.0821 407707.3574 503475.004 487505.585 469123.7259 435769.8697 469522.875 0.802135339 1.05674932 0.899481886 1.126533147 0.86834397 1.07231198 1.038299966 0.999149884 0.928112117 1 18.84083592 -4.25085778 24.75107795 0.999095863 0.802135211 0.372908026 0.076498538 1365.976945 3195043.604 0.017564431 0.244197848 5.61E-05 4.25085778 -0.196960652 APS(ph)PHVVQENLHSEVVEVCTSSTLK ddPTM_HeLa_A485_30min_R1 2 APSPHVVQENLHSEVVEVCTSSTLK 25 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 APS(0.998)PHVVQENLHS(0.002)EVVEVCTSSTLK;APS(0.945)PHVVQENLHS(0.055)EVVEVCTSSTLK ; 112.88 0.00018711 788660000 189855 170079 139769 214021 182742 140248 175891 175012 169053 259830 TRUE FALSE FALSE 232087.5898 189968.2596 191475.3694 225712.4253 164547.5648 147591.1684 138310.451 132090.0326 202980.3865 195059.1628 1.189831774 0.973900722 0.981627146 1.157148539 0.843577725 0.75664822 0.709069233 0.677179327 1.040609339 1 17.57355224 -5.855007176 6.370837478 0.808247519 1.060870393 0.44800753 0.126739129 0.186531586 10.57743483 0.039019819 0.044513474 1.40E-06 5.855007176 0.252622874 APS(ph)PHVVQENLHSEVVEVCTSSTLK ddPTM_HeLa_A486_30min_R1 3 APSPHVVQENLHSEVVEVCTSSTLK 25 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 APS(0.954)PHVVQENLHS(0.046)EVVEVCTSSTLK;APS(0.979)PHVVQENLHS(0.021)EVVEVCTSSTLK;APS(0.858)PHVVQENLHS(0.142)EVVEVCTSSTLK ;; 129.78 3.70E-06 1154444000 200427 208703 136614 82476 177374 195506 200487 202858 184605 213196 TRUE FALSE FALSE 186378.1023 192164.6142 189514.5994 192008.2961 155126.099 171386.4575 150323.0321 156671.6618 200606.71 159810.3339 1.166245622 1.202454244 1.185871995 1.201476096 0.970688786 1.07243664 0.94063399 0.980360017 1.255279963 1 17.28600118 -5.749946917 24.99663183 1.032581442 1.189747906 0.449735565 0.082536738 200.5670995 436240.7433 0.024212047 0.030985501 1.78E-06 5.749946917 0.157166464 APS(ph)PIDHPR ddPTM_HeLa_A485_30min_R1 2 APSPIDHPR 9 0 Q8NAS9-2;Q8NAS9 Q8NAS9-2 C5orf17 Uncharacterized protein C5orf17 1 0 APS(1)PIDHPR;APS(1)PIDHPR ; 108.35 0.00074564 863250000 166015 235310 240310 211790 297200 232060 261670 274940 226650 287810 TRUE FALSE FALSE 202944.464 262827.4576 329210.6691 223359.5514 267609.7245 244210.3028 205762.0669 207510.5339 272136.576 216064.2638 0.939278252 1.216431875 1.52367015 1.033764434 1.238565415 1.130266979 0.95231883 0.960411177 1.259516828 1 17.72110095 -6.53744492 7.034862289 1.039434114 1.200138529 0.152003311 0.163091114 0.280192953 66.98387974 0.062507046 0.049489736 2.90E-07 6.53744492 0.160704415 APS(ph)PIDHPR ddPTM_HeLa_A486_30min_R1 4 APSPIDHPR 9 0 Q8NAS9-2;Q8NAS9 Q8NAS9-2 C5orf17 Uncharacterized protein C5orf17 1 0 APS(1)PIDHPR;APS(1)PIDHPR;APS(1)PIDHPR;APS(1)PIDHPR ;;; 113.22 0.00057499 819920000 453296 546901 508006 171969 652030 524005 565195 542743 472562 537274 TRUE FALSE FALSE 421522.2912 503562.573 704719.5281 400352.5228 570246.3175 459358.5908 423777.233 419172.2669 513524.0546 402737.0933 1.046643823 1.250350617 1.749825233 0.994079089 1.415926983 1.140591712 1.052242865 1.040808691 1.27508507 1 18.61947883 -6.437208549 6.485364736 1.095445135 1.297502744 0.178082538 0.205461977 0.435873541 27.42479845 0.072668564 0.063647044 3.65E-07 6.437208549 0.20205761 APS(ph)PLGPTR ddPTM_HeLa_A485_30min_R1 2 APSPLGPTR 9 0 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(1)PLGPTR;APS(1)PLGPTR ; 106.62 0.0015339 0 321760 337010 383890 491720 407840 339670 417580 361800 367420 578350 TRUE FALSE FALSE 393334.4019 376420.3879 525906.886 518581.4185 367234.0176 357454.596 328360.6217 273067.9827 441157.8238 434177.9887 0.905928933 0.866972527 1.211270262 1.194398224 0.845814452 0.82329046 0.756281134 0.628930968 1.016075976 1 18.72792706 -5.890295165 8.029278612 0.818308125 1.043339632 0.301626469 0.145926153 0.287119452 19.35500851 0.047233689 0.053649911 1.29E-06 5.890295165 0.225031506 APS(ph)PLGPTR ddPTM_HeLa_A486_30min_R1 1 APSPLGPTR 9 0 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(0.999)PLGPT(0.001)R 84.507 0.004052 0 170410 214190 178530 66660 204570 219010 235270 226690 186700 212740 TRUE FALSE FALSE 158465.139 197216.8043 247661.5972 155187.8488 178910.9231 191990.7729 176402.9576 175077.6356 202883.3063 159468.5193 0.993707973 1.236713084 1.553043813 0.973156642 1.121920012 1.203941529 1.106192986 1.097882117 1.272246756 1 17.28291212 APS(ph)PLGPTRDPVATFLETCR ddPTM_HeLa_A485_30min_R1 4 APSPLGPTRDPVATFLETCR 20 1 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(0.987)PLGPT(0.013)RDPVATFLETCR;APS(0.973)PLGPT(0.027)RDPVATFLETCR;APS(0.99)PLGPT(0.01)RDPVATFLETCR;APS(0.993)PLGPT(0.007)RDPVATFLETCR ;;; 156.7 2.26E-10 1069520000 198498 216428 255741 217390 246812 210577 232754 218278 226297 304832 TRUE FALSE FALSE 242653.1953 241737.3719 350350.2382 229265.4652 222238.5307 221602.4861 183024.2065 164744.9783 271712.7322 228842.9924 1.060347939 1.056345966 1.530963367 1.001846125 0.971139768 0.968360376 0.79978069 0.719903968 1.187332543 1 17.80399859 -5.504497295 24.37527921 0.92729918 1.211010634 0.346019756 0.168752682 592.5068538 785711.4798 0.048318761 0.070149133 3.13E-06 5.504497295 0.283711454 APS(ph)PLGPTRDPVATFLETCR ddPTM_HeLa_A486_30min_R1 4 APSPLGPTRDPVATFLETCR 20 1 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(0.994)PLGPT(0.006)RDPVATFLETCR;APS(0.996)PLGPT(0.004)RDPVATFLETCR;APS(0.966)PLGPT(0.034)RDPVATFLETCR;APS(0.962)PLGPT(0.038)RDPVATFLETCR ;;; 215.36 8.18E-29 1272190000 171860 234870 208811 68016 210551 201276 216442 209510 198389 216057 TRUE FALSE FALSE 159813.5015 216258.0458 289668.2114 158344.6853 184141.7303 176444.6135 162285.9223 161809.1466 215585.5183 161954.9209 0.986777682 1.335297777 1.788573078 0.977708392 1.136993734 1.089467443 1.002043787 0.999099908 1.331145217 1 17.30523278 APS(ph)PLGPTRDPVATFLETCREPGSQPAGPASLR ddPTM_HeLa_A485_30min_R1 4 APSPLGPTRDPVATFLETCREPGSQPAGPASLR 33 2 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(0.999)PLGPT(0.001)RDPVATFLETCREPGSQPAGPASLR;APS(1)PLGPTRDPVATFLETCREPGSQPAGPASLR;APS(0.785)PLGPT(0.211)RDPVAT(0.004)FLETCREPGSQPAGPASLR;APS(1)PLGPTRDPVATFLETCREPGSQPAGPASLR ;;; 268.21 9.14E-65 2248760000 65146 66431.6 83112.2 100076 81571.3 70276 98938 103353 67271.8 83226.1 TRUE FALSE FALSE 79637.50295 74200.19774 113858.8614 105542.8985 73449.77496 73955.54269 77799.08805 78005.5147 80772.63321 62479.36493 1.274620877 1.187595262 1.822343449 1.689244098 1.175584532 1.183679488 1.245196524 1.248500441 1.29278896 1 15.93109217 -5.783788437 24.97949755 1.205731226 1.49509644 0.389152941 0.185104477 277.8817583 310586.3214 0.062155427 0.070530347 1.65E-06 5.783788437 0.289365214 APS(ph)PLGPTRDPVATFLETCREPGSQPAGPASLR ddPTM_HeLa_A486_30min_R1 1 APSPLGPTRDPVATFLETCREPGSQPAGPASLR 33 2 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(1)PLGPTRDPVATFLETCREPGSQPAGPASLR 201.48 1.83E-29 138180000 11461 19551 11980 4380.1 15736 10280 16029 18215 13071 15005 TRUE FALSE FALSE 10657.64308 18001.70756 16618.97684 10197.09416 13762.24415 9011.758119 12018.37466 14067.84213 14204.0048 11247.65033 0.947543955 1.600486059 1.477550986 0.906597721 1.223566144 0.801212507 1.068523141 1.250736084 1.262841961 1 13.45733603 -5.253858648 24.98930132 1.078519605 1.367722909 0.253154859 0.20980578 769.2143833 2535650.5 0.057219384 0.096718392 5.57E-06 5.253858648 0.289203304 APS(ph)PLPK ddPTM_HeLa_A485_30min_R1 4 APSPLPK 7 0 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 0 APS(1)PLPK;APS(1)PLPK;APS(1)PLPK;APS(1)PLPK ;;; 68.735 0.02221 1444380000 2019540 1754250 1750300 3140960 3113080 1983550 2958190 2741520 2140630 3986620 TRUE FALSE FALSE 2468779.706 1959394.278 2397808.806 3312542.691 2803130.825 2087405.611 2326148.54 2069157.921 2570234.806 2992829.002 0.82489835 0.654696368 0.8011847 1.106826581 0.936615765 0.697469053 0.777240711 0.691371916 0.858797748 1 21.51307842 -11.403562 1.739907265 1.931428843 0.815079539 0.160426607 0.12584849 4172956.955 390922.5849 15233514.97 0.037023272 3.95E-12 11.403562 -1.116349304 APS(ph)PLPK ddPTM_HeLa_A486_30min_R1 4 APSPLPK 7 0 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 0 APS(1)PLPK;APS(1)PLPK;APS(1)PLPK;APS(1)PLPK ;;; 85.67 0.0079497 1412310000 2709980 3730230 2321170 1551430 3879940 3889400 4582270 4471590 2820130 3796260 TRUE FALSE FALSE 2520024.396 3434632.99 3219989.187 3611807.445 3393281.746 3409565.373 3435737.58 3453506.571 3064581.139 2845651.786 0.885570191 1.206975852 1.131547156 1.269237319 1.192444473 1.198166757 1.20736402 1.21360828 1.076934695 1 21.4403277 -4.257987514 24.86001084 1.178162618 0.885570072 0.554239615 0.074833197 210.1564489 1513454.28 0.017234279 0.122704033 5.52E-05 4.257987514 -0.292592546 APS(ph)PPLSQVFQTR ddPTM_HeLa_A485_30min_R1 6 APSPPLSQVFQTR 13 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 APS(1)PPLSQVFQTR;APS(0.998)PPLS(0.002)QVFQTR;APS(0.998)PPLS(0.002)QVFQTR;APS(0.998)PPLS(0.002)QVFQTR;APS(1)PPLSQVFQTR;APS(0.999)PPLS(0.001)QVFQTR ;;;;; 164.66 7.53E-12 3068800000 269357 347581 379335 290858 445907 362849 444922 464054 320218 406787 TRUE FALSE FALSE 329274.5354 388227.5744 519666.8019 306746.836 401510.9334 381847.2126 349860.78 350244.0289 384482.8154 305382.4873 1.078236471 1.271283032 1.701691563 1.004467672 1.314780481 1.250390014 1.145647817 1.146902797 1.259020512 1 18.2202578 -8.457892064 0.309518149 0.958773353 1.308311773 0.154307729 0.177329077 5.763456507 1.199116946 0.63212485 0.23070473 3.48E-09 8.457892064 0.34953842 APS(ph)PPLSQVFQTR ddPTM_HeLa_A486_30min_R1 6 APSPPLSQVFQTR 13 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 APS(1)PPLSQVFQTR;APS(0.994)PPLS(0.006)QVFQTR;APS(0.982)PPLS(0.018)QVFQTR;APS(0.996)PPLS(0.004)QVFQTR;APS(0.999)PPLS(0.001)QVFQTR;APS(0.999)PPLS(0.001)QVFQTR ;;;;; 158.65 8.04E-09 3585680000 419355 413122 404387 155037.4 501473 406124 423025 426214 348151 440529 TRUE FALSE FALSE 389960.3801 380384.7082 560976.4763 360934.9024 438573.5803 356020.55 317179.6707 329174.3764 378329.009 330217.671 1.180919176 1.151921116 1.698808166 1.093021162 1.328134799 1.078139001 0.960516951 0.996840585 1.145695831 1 18.3330578 -6.348443206 4.157915 1.02484368 1.294970476 0.385799978 0.161066498 0.250615573 7.908475397 0.05871294 0.051661768 4.48E-07 6.348443206 0.270126796 APS(ph)PPPTASNSSNSQSEK ddPTM_HeLa_A486_30min_R1 1 APSPPPTASNSSNSQSEK 18 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 APS(1)PPPTASNSSNSQSEK 79.805 0.00079352 0 47342 47493 23445 11376 34168 40771 46766 39540 38500 53199 TRUE FALSE FALSE 44023.57027 43729.48171 32523.53188 26483.90291 29882.33084 35741.08855 35064.65216 30537.60515 41837.211 39877.62413 1.103966729 1.096591953 0.81558349 0.664129408 0.749350832 0.896269257 0.879306451 0.765782963 1.04914001 1 15.28329184 -4.758186991 24.64514113 0.836197348 1.100279493 0.444445519 0.109637096 57.06591178 432395.4632 0.028490237 0.069126956 1.75E-05 4.758186991 0.264082145 APS(ph)PPSRR ddPTM_HeLa_A485_30min_R1 2 APSPPSRR 8 1 Q7Z2K8 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 APS(1)PPSRR;APS(0.999)PPS(0.001)RR ; 57.348 0.023333 132385000 72269 105687 78432 77819 70465 101651 109851 106535 88111 155390 TRUE FALSE FALSE 88344.98972 118046.1753 107447.2606 82070.05492 63449.25718 106973.2892 86380.43645 80407.12421 105794.0695 116654.1327 0.757324131 1.011933075 0.921075474 0.703533197 0.54390921 0.917012425 0.740483294 0.689277973 0.906903742 1 16.83187789 -2.159813489 13.84290256 0.80837681 0.90986411 0 0.146526644 0 0 0.034212544 0 0.006921281 2.159813489 0.1014873 APS(ph)PPSRR ddPTM_HeLa_A486_30min_R1 4 APSPPSRR 8 1 Q7Z2K8 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 APS(1)PPSRR;APS(0.999)PPS(0.001)RR;APS(1)PPSRR;APS(1)PPSRR ;;; 80.706 0.0050672 378477000 203805 223042 239667 56702 337457 233742 197812 207405 252748 280784 TRUE FALSE FALSE 189519.322 205367.3396 332472.4809 132005.1216 295129.9964 204905.2886 148317.3454 160183.4091 274656.4001 210473.8588 0.900441143 0.975737988 1.579637884 0.627180602 1.402216874 0.973542699 0.704682977 0.761060827 1.304943054 1 17.68328153 -6.510511313 24.80801026 0.910810498 1.100697974 0.058570358 0.287826743 1412.937669 2834243.256 0.101780386 0.085244346 3.09E-07 6.510511313 0.189887476 APS(ph)PPVEHPR ddPTM_HeLa_A485_30min_R1 5 APSPPVEHPR 10 0 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 APS(1)PPVEHPR;APS(1)PPVEHPR;APS(1)PPVEHPR;APS(1)PPVEHPR;APS(1)PPVEHPR ;;;; 112.5 0.00045974 4981220000 262171 404119 451824 306871 420521 338699 399985 406168 388335 387271 TRUE FALSE FALSE 320490.0345 451377.2017 618972.4996 323634.5857 378652.4527 356432.7559 314524.9372 306554.6612 466270.2725 290731.4669 1.102357574 1.552557095 2.129017908 1.113173573 1.302413037 1.225986164 1.081840024 1.054425462 1.603783304 1 18.1493277 APS(ph)PPVEHPR ddPTM_HeLa_A486_30min_R1 4 APSPPVEHPR 10 0 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 APS(1)PPVEHPR;APS(1)PPVEHPR;APS(1)PPVEHPR;APS(1)PPVEHPR ;;; 132.5 4.83E-05 3073080000 281504 333380 338961 93487.9 379873 301417 322030 291299 291565 282559 TRUE FALSE FALSE 261772.0233 306961.7547 470215.7769 217644.5558 332225.7862 264231.2351 241454.6879 224976.5767 316838.089 211804.3872 1.235914075 1.449270049 2.220047389 1.027573407 1.568550069 1.247524844 1.139989077 1.062190352 1.495899557 1 17.69237295 -6.036624899 1.269905698 1.180047684 1.562226697 0.195542614 0.312317398 0.731033616 2.445938964 0.138813917 0.152605168 9.19E-07 6.036624899 0.382179013 APS(ph)PRPGPGPLR ddPTM_HeLa_A485_30min_R1 5 APSPRPGPGPLR 12 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR ;;;; 100.54 0.00049589 6585623000 807708 1343128 1167761 730994 1304086 1213403 1200565 1360345 1026946 1089278 TRUE FALSE FALSE 987379.858 1500195.136 1599764.388 770926.3512 1174246.619 1276934.905 944054.48 1026718.256 1233044.642 817741.0413 1.20744809 1.834560161 1.95632151 0.942751204 1.435963905 1.561539461 1.154466307 1.25555427 1.507866892 1 19.64128452 -9.303272057 0.06163181 4.30E-06 2.331156768 0.188123071 0.288136855 160.6875635 2.612422085 62.28097695 36.89213504 4.97E-10 9.303272057 2.331152472 APS(ph)PRPGPGPLR ddPTM_HeLa_A486_30min_R1 4 APSPRPGPGPLR 12 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR;APS(1)PRPGPGPLR ;;; 101.72 0.00043289 6324770000 886087 1247634 1401692 409292 1676723 861701 1086360 1027581 858871 862674 TRUE FALSE FALSE 823976.8771 1148766.938 1944464.681 952852.4605 1466412.767 755393.0918 814541.2377 793623.2382 933318.6298 646654.8153 1.274214399 1.776476276 3.006959254 1.473510191 2.267690168 1.168155056 1.259622937 1.227274922 1.443302683 1 19.30263628 -6.272179243 24.48446667 1.236372736 1.98074981 0.401296808 0.451400246 583.2955092 1329777.98 0.159008824 0.141690973 5.34E-07 6.272179243 0.744377074 APS(ph)PSINR ddPTM_HeLa_A485_30min_R1 3 APSPSINR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 APS(0.841)PS(0.159)INR;APS(0.972)PS(0.028)INR;APS(0.998)PS(0.002)INR ;; 154.85 0.00014381 2378760000 1449140 2142290 2228000 1545180 2383940 2100210 2246900 2351190 1927600 2224800 TRUE FALSE FALSE 1771496.194 2392812.18 3052229.915 1629589.271 2146586.563 2210173.748 1766831.46 1774556.966 2314451.639 1670198.304 1.060650217 1.432651544 1.827465581 0.975686101 1.285228561 1.323300199 1.057857294 1.062482797 1.385734636 1 20.67158797 -5.293120167 24.99988491 1.166655755 1.439495758 0.265628547 0.216244486 907.8843733 716426.0174 0.06118676 0.09076431 5.09E-06 5.293120167 0.272840003 APS(ph)PSINR ddPTM_HeLa_A486_30min_R1 3 APSPSINR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 APS(0.99)PS(0.01)INR;APS(0.835)PS(0.165)INR;APS(0.983)PS(0.017)INR ;; 170.69 2.31E-05 2261180000 2209830 2541920 2278860 776570 2872870 2229770 2425420 2510940 2136600 2561430 TRUE FALSE FALSE 2054932.329 2340489.002 3161295.622 1807894.206 2512527.856 1954683.648 1818554.263 1939253.775 2321802.208 1920031.256 1.070259832 1.218984844 1.646481333 0.941596237 1.308586956 1.018047827 0.94714826 1.010011566 1.209252298 1 20.87269837 -5.984480242 1.469098727 1.035273071 1.269499507 0.202502168 0.184897737 0.624973305 2.76995107 0.075326266 0.085328157 1.04E-06 5.984480242 0.234226436 APS(ph)PSSR ddPTM_HeLa_A485_30min_R1 12 APSPSSR 7 0 Q9UQ35;I3L3Q8 Q9UQ35;REV__O95996-2 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 APS(0.836)PS(0.162)S(0.002)R;APS(0.988)PS(0.012)S(0.001)R;APS(0.982)PS(0.018)SR;APS(0.996)PS(0.003)SR;APS(0.653)PS(0.34)S(0.007)R;APS(0.966)PS(0.032)S(0.003)R;APS(0.714)PS(0.277)S(0.009)R;APS(0.992)PS(0.007)S(0.001)R;APS(0.997)PS(0.003)SR;APS(0.993)PS(0.007)SR;APS(0.998)PS(0.002)SR;APS(0.999)PS(0.001)SR ;;;;;;;;;;; 103.82 0.0036854 35915301000 7760327 10719727 3979507 11442218 4080464 10190023 6988753 10604626 10133962 13247828 TRUE FALSE FALSE 9486584.968 11973305.82 5451692.24 12067277.4 3674198.677 10723556.85 5495548.829 8003824.846 12167755.22 9945388.288 0.953867732 1.203905315 0.548162835 1.213354074 0.369437429 1.078244161 0.552572576 0.804777512 1.22345703 1 23.24559627 -4.733552301 24.99952522 0.835299878 1.078886466 0.095231087 0.281307769 468.3106754 419812.877 0.066425104 0.175663545 1.85E-05 4.733552301 0.243586588 APS(ph)PSSR ddPTM_HeLa_A486_30min_R1 4 APSPSSR 7 0 Q9UQ35;I3L3Q8 Q9UQ35;REV__O95996-2 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 APS(0.931)PS(0.068)S(0.001)R;APS(0.996)PS(0.004)SR;APS(0.849)PS(0.148)S(0.003)R;APS(0.89)PS(0.098)S(0.011)R ;;; 111.39 0.0028893 18569800000 3552539 1426801 3300033 824483 1388848 5705966 1950618 1680009 5642703 3949082 TRUE FALSE FALSE 3303524.361 1313736.092 4577894.156 1919438.091 1214645.733 5002021.929 1462552.745 1297507.625 6131817.039 2960206.163 1.1159778 0.443798851 1.546478152 0.648413653 0.410324709 1.689754582 0.494071245 0.438316642 2.071415537 1 21.49726622 -7.755220794 24.9999308 1.535707789 0.85314163 0.229969777 0.503016886 191.5186065 769965.3713 0.343409839 0.122545208 1.76E-08 7.755220794 -0.682566159 APS(ph)PTAEQPPGGGDSAR ddPTM_HeLa_A485_30min_R1 2 APSPTAEQPPGGGDSAR 17 0 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 0 APS(0.997)PT(0.003)AEQPPGGGDSAR;APS(0.97)PT(0.03)AEQPPGGGDSAR ; 230.27 1.08E-34 1345770000 201542 230310 232420 279230 319280 256140 320800 267960 233150 368820 TRUE FALSE FALSE 246374.3226 257242.7511 318401.8298 294483.6279 287491.3621 269551.0943 252258.4593 202242.3899 279941.0664 276879.9616 0.889823594 0.929076808 1.149963428 1.063578694 1.038324913 0.973530525 0.911075174 0.730433465 1.011055711 1 18.07890112 -6.659616374 3.170739075 0.889530653 1.018716366 0.174310386 0.098446155 0.362822261 7.264392004 0.042506582 0.031162907 2.19E-07 6.659616374 0.129185713 APS(ph)PTAEQPPGGGDSAR ddPTM_HeLa_A486_30min_R1 2 APSPTAEQPPGGGDSAR 17 0 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 0 APS(0.919)PT(0.081)AEQPPGGGDSAR;APS(0.972)PT(0.028)AEQPPGGGDSAR ; 248.94 6.87E-43 1396950000 296090 340880 231950 132519 328600 320780 394810 384030 248900 428130 TRUE FALSE FALSE 275335.62 313867.4273 321767.2518 308510.9291 287383.9239 281205.4251 296024.3621 296594.7523 270474.8524 320923.4613 0.857947932 0.978013343 1.002629258 0.961322453 0.895490541 0.87623829 0.922414213 0.924191554 0.842801742 1 18.29186974 -5.758494847 24.86745186 0.905312651 0.955741548 0.116391411 0.051723502 127.7443769 1078826.697 0.015232636 0.018811019 1.74E-06 5.758494847 0.050428897 APS(ph)PTGPALISGASPVHCAADGTVELK ddPTM_HeLa_A485_30min_R1 1 APSPTGPALISGASPVHCAADGTVELK 27 0 E7EWD6;Q76L83 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 APS(0.973)PT(0.014)GPALIS(0.005)GAS(0.008)PVHCAADGTVELK 76.956 0.0056008 63152000 33741 41143 44793 39776 62352 42388 57867 55754 36433 51789 TRUE FALSE FALSE 41246.56904 45954.31595 61363.79469 41948.86216 56144.01595 44607.37014 45503.24272 42080.24408 43744.76892 38878.95541 1.060897049 1.181984327 1.578329306 1.078960629 1.44407213 1.147339728 1.170382338 1.082339884 1.125152887 1 15.24670184 -6.840561383 1.593415965 1.074903552 1.269475388 0.228351929 0.151748519 0.603289735 3.091797555 0.089350424 0.050306012 1.44E-07 6.840561383 0.194571835 APS(ph)PTGPALISGASPVHCAADGTVELK ddPTM_HeLa_A486_30min_R1 1 APSPTGPALISGASPVHCAADGTVELK 27 0 E7EWD6;Q76L83 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 APS(0.994)PT(0.006)GPALISGASPVHCAADGTVELK 120.15 6.78E-05 73253000 44491 44601 32206 14067 44387 43456 49548 45081 35728 42493 TRUE FALSE FALSE 41372.41065 41066.65433 44677.02571 32748.68691 38819.56857 38094.84055 37150.56633 34817.04041 38824.93181 31852.47622 1.298875804 1.289276666 1.402623313 1.028136296 1.218730007 1.195977364 1.166332127 1.093071703 1.218898385 1 14.95911791 -1.000000002 0.099749863 0.920056209 2.100277479 0.465556232 0.086763712 117.3558639 0.831718229 1.124708173 18.95747511 0.099999999 1.000000002 1.18022127 APS(ph)PTKPLR ddPTM_HeLa_A485_30min_R1 4 APSPTKPLR 9 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 APS(0.751)PT(0.249)KPLR;APS(0.986)PT(0.014)KPLR;APS(0.648)PT(0.352)KPLR;APS(0.706)PT(0.294)KPLR ;;; 115.33 0.00033301 2639410000 1902860 1586160 1523810 2640220 2186660 1688070 2297640 1908240 1957110 3549670 TRUE FALSE FALSE 2326144.642 1771647.614 2087530.73 2784448.533 1968948.453 1776454.735 1806730.444 1440241.148 2349884.025 2664802.596 0.872914431 0.664832591 0.783371621 1.044898612 0.738872161 0.666636522 0.677997855 0.540468232 0.881822927 1 21.34559723 -5.973777916 24.99998328 0.718041598 0.833126662 0.057261342 0.148098626 491.3299399 468428.9284 0.045389013 0.051464855 1.06E-06 5.973777916 0.115085064 APS(ph)PTKPLR ddPTM_HeLa_A486_30min_R1 4 APSPTKPLR 9 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 APS(0.904)PT(0.096)KPLR;APS(0.886)PT(0.114)KPLR;APS(0.96)PT(0.04)KPLR;APS(0.988)PT(0.012)KPLR ;;; 129 0.00012468 3161190000 1710630 2075370 1249570 743800 1791530 2107680 2186100 2104560 1778540 2152370 TRUE FALSE FALSE 1590723.671 1910910.123 1733436.969 1731603.99 1566819.602 1847655.871 1639114.658 1625397.63 1932705.279 1613402.542 0.985943451 1.184397615 1.074398312 1.073262217 0.971127515 1.145192116 1.015936578 1.007434653 1.19790643 1 20.621675 -5.233722721 3.844450657 1.056851428 1.093191635 0.013665142 0.079148096 0.892938624 29.36750893 0.021359728 0.037091904 5.84E-06 5.233722721 0.036340206 APS(ph)PTKPLRR ddPTM_HeLa_A485_30min_R1 1 APSPTKPLRR 10 2 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 APS(0.981)PT(0.019)KPLRR 70.54 0.0060995 616270000 285530 329120 258870 315020 374000 335510 436790 444250 319230 505690 TRUE FALSE FALSE 349045.1634 367607.721 354636.7855 332228.7449 336763.2468 353076.7848 343466.2483 335296.9909 383296.5328 379630.7895 0.919433231 0.968329575 0.934162337 0.875136459 0.887080964 0.930053079 0.904737597 0.883218643 1.009656075 1 18.53423748 -7.771405095 24.99328955 1.004828119 0.913531856 0.660967105 0.026368342 148.5275169 372483.2119 0.026724934 0.007227514 1.69E-08 7.771405095 -0.091296263 APS(ph)PTKPLRR ddPTM_HeLa_A486_30min_R1 2 APSPTKPLRR 10 2 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 APS(0.957)PT(0.043)KPLRR;APS(0.812)PT(0.188)KPLRR ; 52.495 0.031541 978080000 1235120 1341070 933610 601880 1336790 1280190 1560900 1542470 1052900 1559360 TRUE FALSE FALSE 1148544.466 1234798.729 1295128.795 1401207.057 1169117.333 1122253.174 1170346.31 1191283.253 1144166.22 1168886.106 0.982597415 1.05638926 1.108002557 1.198754139 1.000197818 0.960104811 1.001249227 1.019161103 0.978851758 1 20.15670293 -5.958569938 24.99993659 0.992156143 1.087535971 0.437573912 0.051815396 146.607787 88466.11554 0.017051065 0.019334074 1.10E-06 5.958569938 0.095379828 APS(ph)PTKR ddPTM_HeLa_A485_30min_R1 2 APSPTKR 7 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BTV0;H3BNI3;H3BP82;H3BTR6;H3BUG0;H3BTY0;H3BNU7 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 1 0 APS(0.954)PT(0.046)KR;APS(0.816)PT(0.184)KR ; 99.013 0.0028032 368480000 757100 240330 106473 944510 122659 1093150 244540 333030 351590 546790 TRUE FALSE FALSE 925514.283 268434.5029 145861.7934 996106.1897 110446.6393 1150385.644 192292.0313 251353.8703 422150.888 410485.3159 2.254683047 0.653944228 0.355339857 2.426654867 0.269063557 2.80250133 0.468450451 0.612333403 1.028418975 1 18.64697109 APS(ph)PTSSAGEEGTKKPEPLSPASYHQPEGVAR ddPTM_HeLa_A486_30min_R1 3 APSPTSSAGEEGTKKPEPLSPASYHQPEGVAR 32 2 O94964-2;H0YDM2;O94964;O94964-3 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 APS(0.359)PT(0.139)S(0.25)S(0.25)AGEEGT(0.001)KKPEPLSPASYHQPEGVAR;APS(0.494)PT(0.148)S(0.148)S(0.148)AGEEGT(0.061)KKPEPLSPASYHQPEGVAR;APS(0.908)PT(0.058)S(0.017)S(0.017)AGEEGTKKPEPLSPASYHQPEGVAR ;; 164.76 1.16E-14 2455590000 367737 345194 212385 27005.2 318532 329716 424658 341070 298556 228218 TRUE FALSE FALSE 341960.5353 317839.5703 294626.1599 62869.47037 278578.7464 289038.9922 318404.0768 263415.8065 324435.0745 171070.7274 1.998942429 1.857942473 1.72224766 0.367505717 1.628441936 1.689587673 1.861242316 1.539806433 1.896496727 1 17.38423339 -5.007907764 24.88932693 1.452233656 1.893855857 0.183299778 0.430487628 678.689526 2136169.046 0.119532078 0.232320676 9.82E-06 5.007907764 0.4416222 APS(ph)QHIFFVQHIEAVR ddPTM_HeLa_A485_30min_R1 1 APSQHIFFVQHIEAVR 16 0 Q8N3E9;F5GXC1;K7EQF2 Q8N3E9 PLCD3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3" 1 0 APS(1)QHIFFVQHIEAVR 166.49 3.64E-12 98821000 44395 50277 27382 48333 29662 32935 43737 48193 37354 71812 TRUE FALSE FALSE 54270.51459 56156.4578 37511.74126 50973.3094 26708.74713 34659.42567 34392.23265 36373.59119 44850.60517 53910.59 1.006676324 1.041659121 0.695813963 0.945515703 0.495426727 0.642905701 0.637949476 0.674702154 0.831944246 1 15.71828108 -4.784107694 1.586713698 0.708017587 1.061017779 0.32018556 0.150569929 0.48701394 2.147907439 0.043260335 0.198316788 1.64E-05 4.784107694 0.353000192 APS(ph)RQDVYGPQPQVR ddPTM_HeLa_A485_30min_R1 5 APSRQDVYGPQPQVR 15 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR ;;;; 214.46 8.75E-27 12470570000 1576619 1901069 1907983 1571582 2146874 1791227 1776163 1714632 1616598 2383886 TRUE FALSE FALSE 1927332.457 2123382.482 2613825.309 1657433.545 1933123.686 1885012.876 1396671.265 1294115.814 1941034.39 1789627.092 1.076946402 1.186494377 1.460541875 0.926133468 1.080182399 1.053299251 0.780425861 0.723120375 1.084602708 1 20.77122757 -5.891491354 1.196755609 0.892302199 1.216515092 0.369769362 0.155918139 0.46738798 1.414326483 0.0690333 0.088112967 1.28E-06 5.891491354 0.324212893 APS(ph)RQDVYGPQPQVR ddPTM_HeLa_A486_30min_R1 4 APSRQDVYGPQPQVR 15 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR ;;; 239.7 1.81E-41 19202100000 1409830 2050340 2157560 561240 2850850 1558060 1898400 1942140 1862910 1888040 TRUE FALSE FALSE 1311008.197 1887863.591 2993025.013 1306595.083 2493269.81 1365842.398 1423400.241 1499957.119 2024388.539 1415262.495 0.926335717 1.33393176 2.114819706 0.923217487 1.761701323 0.965080615 1.00574999 1.059843756 1.430397927 1 20.43263823 -6.289049854 24.86147724 1.090550654 1.419554921 0.170201534 0.35284234 1265.8255 1139790.914 0.12270186 0.108235757 5.14E-07 6.289049854 0.329004267 APS(ph)SDEECFFDLLTK ddPTM_HeLa_A485_30min_R1 3 APSSDEECFFDLLTK 15 0 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 APS(0.895)S(0.105)DEECFFDLLTK;APS(0.5)S(0.5)DEECFFDLLTK;APS(0.991)S(0.009)DEECFFDLLTK ;; 235.88 3.26E-32 6057200 56503.5 52331 52684 70921 85120 55439.5 85092 84259 66631 104401 TRUE FALSE FALSE 69072.50864 58450.65523 72174.00396 74795.23465 76645.15393 58342.22649 66911.39906 63594.34814 80003.23052 78375.75206 0.881299469 0.745774729 0.920871597 0.954316006 0.977919215 0.744391281 0.853725767 0.811403355 1.020765076 1 16.25811976 -7.771162296 24.99981214 1.010382663 0.862203428 0.38867521 0.074823094 246.3372008 633366.0729 0.072644241 0.019698558 1.69E-08 7.771162296 -0.148179235 APS(ph)SDEECFFDLLTK ddPTM_HeLa_A486_30min_R1 3 APSSDEECFFDLLTK 15 0 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 APS(0.5)S(0.5)DEECFFDLLTK;APS(0.5)S(0.5)DEECFFDLLTK;APS(0.964)S(0.036)DEECFFDLLTK ;; 112.96 0.00019103 51678000 42439 71498 41988.5 29077.1 67841 70093 87101 84698 55056.4 61819 TRUE FALSE FALSE 39464.24526 65832.23809 58247.57169 67692.95828 59331.74919 61445.63831 65307.40854 65414.11434 59828.73308 46339.12003 0.851639937 1.420662241 1.256984847 1.460816654 1.280381439 1.325999248 1.409336399 1.411639114 1.291106371 1 15.49994303 -4.255161766 24.82649001 1.334873022 0.851639699 0.549525336 0.125630227 435.4902364 1722210.175 0.02826473 0.256479188 5.56E-05 4.255161766 -0.483233323 APS(ph)SSSLNSATSSQSK ddPTM_HeLa_A486_30min_R1 2 APSSSSLNSATSSQSK 16 0 A0A2R8Y534;A0A2R8Y4Q0;Q5F1R6;Q5F1R6-3;Q5F1R6-2 A0A2R8Y534 DNAJC21 DnaJ homolog subfamily C member 21 1 0 APS(0.966)S(0.032)S(0.001)SLNSATSSQSK;APS(0.959)S(0.033)S(0.007)SLNSATSSQSK ; 117.65 8.46E-06 0 84488 92373 52828 35590 78190 94844 98609 86775 69562 98888 TRUE FALSE FALSE 78565.8275 85053.02706 73284.41638 82855.31862 68382.68111 83143.11158 73935.98522 67018.22678 75591.69017 74125.80115 1.059898528 1.147414608 0.988649232 1.117766248 0.922521984 1.121648742 0.997439273 0.904114704 1.019775692 1 16.17768817 -5.652524009 0.519157495 0.975727527 1.106959374 0.206286625 0.070100558 1.938747085 0.990025411 0.053791494 0.131965773 2.23E-06 5.652524009 0.131231847 APS(ph)VANVGSHCDLSLK ddPTM_HeLa_A485_30min_R1 4 APSVANVGSHCDLSLK 16 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 APS(1)VANVGSHCDLSLK;APS(0.997)VANVGS(0.003)HCDLSLK;APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK ;;; 207.17 1.57E-25 20425000000 17836000 8558200 10024000 27220700 13569300 9367700 13358200 6695000 12969200 30821700 TRUE FALSE FALSE 21803556.67 9559007.044 13732294.73 28707697.91 12218292.85 9858178.287 10504111.44 5053040.753 15571999.48 23138417.42 0.942309764 0.413122768 0.593484614 1.240694097 0.528052227 0.426052401 0.453968448 0.218383162 0.672993282 1 24.46378686 -5.964397578 24.99926012 0.496701841 0.771511748 0.14157108 0.278945666 307.2701838 215757.3082 0.085669404 0.097139664 1.09E-06 5.964397578 0.274809907 APS(ph)VANVGSHCDLSLK ddPTM_HeLa_A486_30min_R1 5 APSVANVGSHCDLSLK 16 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK ;;;; 196.61 1.85E-19 33860110000 12810700 22781070 12685180 5206340 17033370 24105170 22082070 18570180 21395940 18814470 TRUE FALSE FALSE 11912736.08 20975815.05 17597221.42 12120622.63 14896885.9 21131319.21 16556902.53 14342155.4 23250557.31 14103204.25 0.844682944 1.487308464 1.247746335 0.859423321 1.05627669 1.498334622 1.173981617 1.01694304 1.648601048 1 23.74951964 APS(ph)VANVGSHCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 2 APSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 35 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 APS(0.768)VANVGS(0.231)HCDLSLKIPEISIQDMTAQVTSPSGK;APS(0.904)VANVGS(0.093)HCDLS(0.002)LKIPEISIQDMTAQVTSPSGK ; 371.23 5.28E-171 7037840000 3676330 4798660 2524080 1723570 4255700 4951730 5771220 4892390 3665780 5110790 TRUE FALSE FALSE 3418638.252 4418396.705 3501471.373 4012558.064 3721910.423 4340835.898 4327199.714 3778499.597 3983532.762 3831014.918 0.892358376 1.153322762 0.913980093 1.047387742 0.971520733 1.133077263 1.129517845 0.98629206 1.039811342 1 21.86929521 -6.231588687 24.68759656 1.061369129 1.002799987 0.124570944 0.080847804 1385.304349 1145697.211 0.025791851 0.025786461 5.87E-07 6.231588687 -0.058569142 APS(ph)VATVGSICDLNLK ddPTM_HeLa_A485_30min_R1 4 APSVATVGSICDLNLK 16 0 O75369-8;O75369;O75369-9;O75369-2;O75369-7;E7EN95;O75369-4;O75369-5;A0A0C4DGA1 O75369-8 FLNB Filamin-B 1 0 APS(1)VATVGSICDLNLK;APS(0.999)VAT(0.001)VGSICDLNLK;APS(1)VATVGSICDLNLK;APS(1)VATVGSICDLNLK ;;; 300.03 1.03E-67 1036027000 783030 463584 508983 1051440 874570 496633 742771 521892 670288 1192140 TRUE FALSE FALSE 957212.3221 517796.1162 697276.9922 1108877.505 787494.74 522635.9359 584071.908 393897.1687 804808.6534 894961.4377 1.069557058 0.578568075 0.779114007 1.239022664 0.879920304 0.583975928 0.65262243 0.440127532 0.899266292 1 19.771466 -6.189286163 7.415129357 0.676590812 0.903051156 0.152708222 0.219282788 0.487437769 44.34840779 0.073118114 0.073084441 6.47E-07 6.189286163 0.226460344 APS(ph)VATVGSICDLNLK ddPTM_HeLa_A486_30min_R1 4 APSVATVGSICDLNLK 16 0 O75369-8;O75369;O75369-9;O75369-2;O75369-7;E7EN95;O75369-4;O75369-5;A0A0C4DGA1 O75369-8 FLNB Filamin-B 1 0 APS(1)VATVGSICDLNLK;APS(1)VATVGSICDLNLK;APS(1)VATVGSICDLNLK;APS(1)VATVGSICDLNLK ;;; 300.03 1.03E-67 1744080000 852202 1231470 851448 488005 1196630 1277340 1430310 1278070 1020857 1152610 TRUE FALSE FALSE 792467.0406 1133883.832 1181151.468 1136100.302 1046537.507 1119754.778 1072431.31 987081.3611 1109345.707 863988.9538 0.91721895 1.312382325 1.367090937 1.314947717 1.211285749 1.296029044 1.241255811 1.142469885 1.283981354 1 19.72065334 -10.13487151 4.781048331 0.999982493 1.239571964 0.24611912 0.1210565 2.23E-05 4.03E-06 0.115583807 0.028031143 7.33E-11 10.13487151 0.239589471 APS(ph)VATVGSICDLNLKIPEINSSDMSAHVTSPSGR ddPTM_HeLa_A485_30min_R1 1 APSVATVGSICDLNLKIPEINSSDMSAHVTSPSGR 35 1 O75369-8;O75369;O75369-9;O75369-2;O75369-7;E7EN95 O75369-8 FLNB Filamin-B 1 0 APS(1)VATVGSICDLNLKIPEINSSDMSAHVTSPSGR 312.16 1.47E-110 262630000 66012 89101 79927 45626 96186 84059 118820 133430 88009 73102 TRUE FALSE FALSE 80696.14166 99520.58687 109495.3233 48118.43285 86609.38411 88460.19926 93433.13633 100706.0833 105671.599 54879.01674 1.47043709 1.813454263 1.995212922 0.876809311 1.578187607 1.611912977 1.702529343 1.835056261 1.925537397 1 15.74396701 -11.00718077 3.139732686 0.32340406 1.642369829 0.295113071 0.299230677 228304927 202037607.9 1114604425 0.077267915 9.84E-12 11.00718077 1.318965769 APS(ph)VATVGSICDLNLKIPEINSSDMSAHVTSPSGR ddPTM_HeLa_A486_30min_R1 2 APSVATVGSICDLNLKIPEINSSDMSAHVTSPSGR 35 1 O75369-8;O75369;O75369-9;O75369-2;O75369-7;E7EN95 O75369-8 FLNB Filamin-B 1 0 APS(1)VATVGSICDLNLKIPEINSSDMSAHVTSPSGR;APS(1)VATVGSICDLNLKIPEINSSDMSAHVTSPSGR ; 317.33 9.36E-111 726050000 275860 264610 240060 50213 403250 229280 310750 319020 211721 172306 TRUE FALSE FALSE 256523.6385 243641.3399 333017.661 116898.4016 352670.6248 200993.7647 232997.0632 246386.1102 230073.1467 129159.4561 1.986100332 1.886360839 2.57834518 0.905070408 2.730505652 1.556167631 1.803948935 1.907611859 1.781310898 1 16.97879374 -11.03087891 0.277740433 1.00E-10 2.004369634 0.256771053 0.474097707 44.38597444 1.835219948 29.17075931 0.55546744 9.31E-12 11.03087891 2.004369634 APS(ph)YSGLSMVSGVK ddPTM_HeLa_A485_30min_R1 1 APSYSGLSMVSGVK 14 0 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0 A0A2R8Y7K2 SPAST Spastin 1 0 APS(0.998)YS(0.002)GLSMVSGVK 87.824 0.0015582 575770000 113670 140190 146200 122220 158310 142090 192500 178480 143970 179590 TRUE FALSE FALSE 138955.4993 156584.001 200285.4639 128896.5691 142548.1005 149529.6127 151370.8024 134707.5002 172863.4584 134821.5181 1.030662622 1.161416985 1.48556007 0.956053388 1.057309712 1.109093079 1.122749577 0.999154304 1.282165198 1 17.04069125 APSAS(ph)PLALHASR ddPTM_HeLa_A485_30min_R1 2 APSASPLALHASR 13 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 APS(0.016)AS(0.984)PLALHASR;APS(0.04)AS(0.96)PLALHASR ; 156 1.81E-08 1142890000 255028 648180 783690 151108 788630 447310 537240 560070 561630 335870 TRUE FALSE FALSE 311758.0988 723979.0126 1073609.543 159362.6474 710111.2282 470730.4599 422454.2852 422711.9543 674343.9894 252143.7902 1.23642981 2.87129424 4.257925774 0.632030824 2.816294732 1.866912762 1.675449888 1.676471802 2.674442186 1 17.94388717 -5.270974143 24.99972222 1.835830737 2.796824429 0.204611147 0.918673246 1101.380127 2887767.498 0.25382578 0.381955482 5.36E-06 5.270974143 0.960993693 APSAS(ph)PLALHASR ddPTM_HeLa_A486_30min_R1 4 APSASPLALHASR 13 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 APS(0.157)AS(0.843)PLALHASR;APS(0.12)AS(0.88)PLALHASR;APS(0.001)AS(0.999)PLALHASR;APS(0.054)AS(0.946)PLALHASR ;;; 173.19 2.09E-12 365550000 287760 359146 417698 59209.5 503084 276634 345920 329449 374674 165921 TRUE FALSE FALSE 267589.51 330685.963 579441.8519 137842.7083 439982.5136 242505.7097 259367.1572 254440.6545 407151.044 124373.3016 2.151502826 2.658817919 4.658892578 1.108298216 3.537596155 1.949821276 2.085392555 2.045781942 3.273620935 1 16.9243173 -6.091089536 1.157496523 2.141910288 2.898700345 0.093443771 1.013124884 1.274183636 3.572687397 0.47502824 0.501720365 8.11E-07 6.091089536 0.756790057 APSDS(ph)SLGTPSDGRPELR ddPTM_HeLa_A485_30min_R1 2 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APSDS(0.333)S(0.333)LGT(0.333)PS(0.001)DGRPELR;APS(0.271)DS(0.359)S(0.359)LGT(0.003)PS(0.008)DGRPELR ; 159.4 1.20E-10 659210000 358500 508620 434211 401010 566680 438600 503220 465560 468900 547520 TRUE FALSE FALSE 438247.0882 568098.6846 594843.7179 422916.1609 510259.3495 461564.4178 395702.9361 351380.68 563003.929 411033.3404 1.066208128 1.382123124 1.44719092 1.028909627 1.24140623 1.122936688 0.962702772 0.85487148 1.369728131 1 18.6488959 -5.911948276 1.215822436 1.043913608 1.283745625 0.204329166 0.170622259 0.666732408 2.076700733 0.074037276 0.092264818 1.22E-06 5.911948276 0.239832016 APSDSS(ph)LGTPSDGRPELR ddPTM_HeLa_A485_30min_R1 1 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APS(0.2)DS(0.345)S(0.455)LGTPSDGRPELR 146.97 2.12E-08 3417200000 747220 1183600 1280200 1078100 1425400 1019900 1321400 1340000 1149700 1509600 TRUE FALSE FALSE 913436.5111 1322011.724 1753799.254 1136993.873 1283482.171 1073300.387 1039072.095 1011362.899 1380434.244 1133284.502 0.80600812 1.166531195 1.547536607 1.003273115 1.132533065 0.947070559 0.916867824 0.89241748 1.218082698 1 20.11207865 -5.931323328 2.106197507 0.98668538 1.168509953 0.09670437 0.19287966 0.655989877 5.916334198 0.070628994 0.081051402 1.17E-06 5.931323328 0.181824573 APSDSSLGT(ph)PSDGRPELR ddPTM_HeLa_A485_30min_R1 1 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APSDS(0.017)S(0.038)LGT(0.566)PS(0.379)DGRPELR 143.93 1.21E-07 609120000 230600 335700 379590 321570 463140 351180 409200 429680 343440 395050 TRUE FALSE FALSE 281896.1744 374957.1948 520016.1371 339136.5548 417028.1554 369567.2418 321771.0771 324300.3063 412365.2578 296571.3054 0.950517361 1.264307059 1.75342701 1.143524504 1.406164885 1.246132836 1.084970364 1.093498597 1.390442198 1 18.17801949 -6.542399252 6.790765605 1.151365175 1.318501936 0.110874055 0.212993668 0.374528324 70.90759086 0.081858019 0.064503097 2.87E-07 6.542399252 0.167136761 APSDSSLGT(ph)PSDGRPELR ddPTM_HeLa_A486_30min_R1 1 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APSDS(0.001)SLGT(0.619)PS(0.38)DGRPELR 209.33 3.21E-25 407690000 376680 403280 392490 118430 536140 427020 393810 458900 394160 425470 TRUE FALSE FALSE 350276.6772 371322.6241 544472.6392 275711.0251 468892.3219 374338.614 295274.5727 354418.4877 428326.1062 318929.5427 1.098288588 1.164277919 1.707187847 0.864488824 1.47020661 1.173734521 0.925830107 1.111275189 1.343011697 1 18.28287822 -6.520021762 24.83684787 1.096513624 1.264662258 0.102604447 0.23138719 259.1293306 2252757.535 0.08505203 0.067154439 3.02E-07 6.520021762 0.168148634 APSEEELHGDQTDFGQGS(ph)QSPQKQEEQR ddPTM_HeLa_A486_30min_R1 1 APSEEELHGDQTDFGQGSQSPQKQEEQR 28 1 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2;A0A087WWG1 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 APSEEELHGDQTDFGQGS(0.5)QS(0.5)PQKQEEQR 218.93 1.79E-38 305770000 70570 76349 40783 32780 75401 82040 99499 93489 69059 101790 TRUE FALSE FALSE 65623.40742 70298.82718 56575.26981 76313.49661 65943.50349 71918.73892 74603.29781 72203.59555 75045.08972 76301.12146 0.860058229 0.921334128 0.741473634 1.000162188 0.864253398 0.942564638 0.977748379 0.94629796 0.983538489 1 16.21941664 -6.171547915 0.668426188 0.986377413 0.854239179 0.393524565 0.06023878 0.812745131 0.802678354 0.043277418 0.049694907 6.74E-07 6.171547915 -0.132138233 APSEEELHGDQTDFGQGSQS(ph)PQKQEEQR ddPTM_HeLa_A486_30min_R1 1 APSEEELHGDQTDFGQGSQSPQKQEEQR 28 1 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2;A0A087WWG1 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 APSEEELHGDQTDFGQGS(0.484)QS(0.516)PQKQEEQR 214.01 1.24E-29 315680000 103660 116280 74744 42239 123810 124670 155860 141780 114440 163400 TRUE FALSE FALSE 96393.9693 107065.5493 103686.8785 98334.52664 108280.5953 109289.483 116862.1795 109499.789 124359.7513 122483.5764 0.786995058 0.874121678 0.846536993 0.802838466 0.88404175 0.892278672 0.954104892 0.893995687 1.015317767 1 16.90222879 -6.846048597 0.575322362 1.004229904 0.822083713 0.765429356 0.034947536 0.402940729 0.274950938 0.031785075 0.023280271 1.43E-07 6.846048597 -0.182146191 APSERRS(ph)PER ddPTM_HeLa_A485_30min_R1 2 APSERRSPER 10 2 Q9NRR4;Q9NRR4-3;Q9NRR4-4;H0YB67;Q9NRR4-2;H7C5U6 Q9NRR4 DROSHA Ribonuclease 3 1 0 APSERRS(1)PER;APSERRS(1)PER ; 92.939 0.0019801 1054560000 117809 500360 454440 126469 936060 793830 1039350 2595700 475000 241820 TRUE FALSE FALSE 144015.2056 558872.7494 622556.2668 133377.6812 842862.5797 835393.7113 817284.3818 1959100.505 570328.143 181538.7244 0.79330295 3.078531875 3.429330403 0.734706502 4.64288037 4.601738358 4.501983721 10.7916397 3.141633528 1 17.4699178 -3.332875245 19.17885851 3.914678918 2.719609451 0 2.802190473 0 0 0.666328014 0 0.000464649 3.332875245 -1.195069467 APSERRS(ph)PER ddPTM_HeLa_A486_30min_R1 1 APSERRSPER 10 2 Q9NRR4;Q9NRR4-3;Q9NRR4-4;H0YB67;Q9NRR4-2;H7C5U6 Q9NRR4 DROSHA Ribonuclease 3 1 0 APS(0.001)ERRS(0.999)PER 65.563 0.013607 207440000 94912 61062 181170 84603 360340 126100 201470 240580 86001 115810 TRUE FALSE FALSE 88259.15893 56223.22474 251323.8759 196960.0596 315142.7972 110543.0641 151060.0751 185805.1858 93455.63592 86810.4222 1.016688511 0.647655239 2.895088741 2.268852686 3.630241498 1.273384708 1.740114507 2.140355744 1.07654857 1 16.40558064 -7.76972973 22.9422362 1.038271431 1.976416093 0.16094908 0.832538132 140.0765357 387595.3628 0.793551831 0.220600395 1.70E-08 7.76972973 0.938144662 APSLPAPPYAGAPGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 APSLPAPPYAGAPGSPR 17 0 Q69YU3 Q69YU3 ANKRD34A Ankyrin repeat domain-containing protein 34A 1 0 APSLPAPPYAGAPGS(1)PR;APSLPAPPYAGAPGS(1)PR ; 119.76 5.62E-05 437060000 108613 142378 109118 157355 212780 147329 175633 174840 109568 163392 TRUE FALSE FALSE 132773.5871 159027.8686 149485.289 165950.9052 191594.8761 155042.9186 138107.5748 131960.2159 131557.2926 122661.3814 1.082440012 1.296478702 1.218682582 1.352918933 1.561982051 1.263991297 1.12592548 1.075808982 1.07252414 1 16.90432158 -6.816408118 3.166052946 1.062958854 1.309495201 0.495401369 0.114296033 0.232204162 4.722057087 0.055405101 0.036733062 1.53E-07 6.816408118 0.246536347 APSLPAPPYAGAPGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 APSLPAPPYAGAPGSPR 17 0 Q69YU3 Q69YU3 ANKRD34A Ankyrin repeat domain-containing protein 34A 1 0 APSLPAPPYAGAPGS(1)PR;APSLPAPPYAGAPGS(1)PR ; 135.08 7.50E-06 533730000 220736 242219 183502 91328 260241 248864 249924 248666 199658 319750 TRUE FALSE FALSE 205263.5463 223024.6843 254558.8888 212616.1995 227599.1471 218161.6899 187390.3718 192050.1801 216964.5162 239682.5188 0.856397652 0.93050042 1.062066979 0.887074287 0.949585928 0.910211104 0.781827447 0.801269033 0.905216272 1 17.87076516 -6.534130101 24.63502808 0.854160396 0.939815733 0.1246649 0.075348046 289.8145997 634546.8637 0.028409556 0.022026262 2.92E-07 6.534130101 0.085655337 APSNTFHPQDFSDVISFILYGNSHR ddPTM_HeLa_A485_30min_R1 2 APSNTFHPQDFSDVISFILYGNSHR 25 0 J3KRA9;Q96Q15-3;Q96Q15-2;Q96Q15;I3L144;H3BQN7 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 0 0 ; ; 252.21 2.92E-60 69763000 29541 44537 49077 22104.7 49606 31889.8 43731 49468 34786.2 42472.4 FALSE FALSE TRUE 36112.29353 49745.21473 67232.62456 23312.22379 44667.05246 33559.50062 34387.5146 37335.89544 41767.47126 31884.81233 1.132586046 1.560153913 2.1086097 0.731138811 1.400888047 1.052523072 1.078491987 1.170961744 1.309948788 1 14.96058177 -5.270512837 24.99205507 1.12228011 1.596420305 0.399296344 0.277260692 657.946453 1812256.035 0.076939121 0.115988637 5.36E-06 5.270512837 0.474140195 APSNTFHPQDFSDVISFILYGNSHR ddPTM_HeLa_A486_30min_R1 2 APSNTFHPQDFSDVISFILYGNSHR 25 0 J3KRA9;Q96Q15-3;Q96Q15-2;Q96Q15;I3L144;H3BQN7 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 0 0 ; ; 206.46 6.17E-36 38005000 19426.6 21802.7 19073.8 3156.21 25562.9 15953.5 19738.9 19274 19162 15031.6 FALSE FALSE TRUE 18064.89566 20074.97465 26459.68617 7347.816386 22356.56272 13985.31937 14800.01844 14885.73095 20822.97759 11267.58952 1.603261782 1.781656548 2.348300506 0.652119637 1.984147779 1.241198869 1.313503515 1.321110511 1.848041904 1 13.45989129 -5.241694524 24.99939785 1.372513556 1.898131214 0.301040243 0.398056856 1088.224351 1377823.248 0.102769024 0.17768187 5.73E-06 5.241694524 0.525617658 APSPAPRPVPGS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 APSPAPRPVPGSPAR 15 1 Q5TZA2;Q5TZA2-2 Q5TZA2 CROCC Rootletin 1 0 APSPAPRPVPGS(1)PAR;APSPAPRPVPGS(1)PAR ; 131.54 8.09E-06 646150000 204813 314820 298840 247330 316760 292080 353000 353270 269650 353370 TRUE FALSE FALSE 250372.9453 351635.4604 409393.3518 260841.0116 285222.2622 307372.8572 277578.6663 266629.9786 323766.2816 265281.3623 0.943801491 1.325518903 1.543242044 0.983261732 1.075168869 1.158667365 1.046355703 1.005083721 1.220463733 1 18.0171638 -5.307952374 24.99965841 1.07301162 1.27632172 0.267373103 0.152325587 535.4131722 287771.0945 0.043065534 0.063876742 4.92E-06 5.307952374 0.2033101 APSPAPRPVPGS(ph)PAR ddPTM_HeLa_A486_30min_R1 3 APSPAPRPVPGSPAR 15 1 Q5TZA2;Q5TZA2-2 Q5TZA2 CROCC Rootletin 1 0 APSPAPRPVPGS(1)PAR;APSPAPRPVPGS(1)PAR;APSPAPRPVPGS(1)PAR ;; 84.208 0.00053388 271920000 248580 272350 222800 92584 281130 254830 279150 284530 233500 322310 TRUE FALSE FALSE 231155.8257 250767.9941 309074.1268 215540.2309 245868.054 223391.6655 209303.7175 219748.7302 253739.968 241601.4781 0.956764948 1.037940645 1.2792725 0.892131259 1.01765956 0.92462872 0.866318034 0.909550438 1.050241787 1 17.88226976 APSPLGPTRDPVAT(ph)FLETCREPGSQPAGPASLR ddPTM_HeLa_A485_30min_R1 1 APSPLGPTRDPVATFLETCREPGSQPAGPASLR 33 2 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(0.037)PLGPT(0.319)RDPVAT(0.359)FLET(0.279)CREPGS(0.006)QPAGPASLR 72.208 0.0057381 126590000 13532 12368 15789 12554 21347 15193 20965 26475 17439 19598 TRUE FALSE FALSE 16542.14672 13814.33001 21630.00814 13239.79323 19221.61773 15988.48199 16485.65648 19981.96474 20938.84734 14712.57927 1.124353956 0.938946853 1.470171051 0.899896135 1.306475049 1.086721892 1.120514369 1.358155111 1.42319351 1 13.84476257 -7.249607757 23.94413998 1.293005733 1.136286486 0.07924442 0.185784779 824.1881182 1667949.81 0.082966282 0.047363442 5.63E-08 7.249607757 -0.156719247 APSPS(ph)INR ddPTM_HeLa_A485_30min_R1 1 APSPSINR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 APS(0.293)PS(0.707)INR 111.61 0.0011548 783400000 141770 185540 195010 136550 213660 189730 197130 211930 163790 200510 TRUE FALSE FALSE 173306.2474 207237.289 267152.314 144009.3807 192387.2602 199663.9694 155011.5651 159953.8352 196661.1506 150526.5471 1.151333441 1.376749105 1.774785373 0.956704206 1.278095219 1.326436919 1.029795528 1.062628741 1.306488154 1 17.19965842 -5.282957603 24.99871443 1.149058459 1.428535393 0.34287623 0.187942 936.4842607 1087954.782 0.053384627 0.079264027 5.21E-06 5.282957603 0.279476934 APSQAAES(ph)SPAKK ddPTM_HeLa_A486_30min_R1 1 APSQAAESSPAKK 13 1 Q8NFH8-3;Q8NFH8-2;Q8NFH8-4;Q8NFH8 Q8NFH8-3 REPS2 RalBP1-associated Eps domain-containing protein 2 1 0 APS(0.003)QAAES(0.549)S(0.448)PAKK 66.826 0.008152 106510000 199070 170450 76804 118620 143560 241200 277000 233490 146720 365530 TRUE FALSE FALSE 185116.221 156942.9212 106544.5657 276153.3547 125553.3662 211443.1963 207691.6702 180329.4241 159437.8077 273998.9088 0.675609337 0.572786665 0.388850328 1.007862973 0.458225789 0.771693571 0.758001815 0.658139205 0.581892127 1 18.06381062 -14 0.257210748 3.158669995 0.626203456 0.280599588 0.165213748 252.4314278 2.490580066 288.0145991 0.219673848 1.00E-14 14 -2.532466539 APSQVSISAS(ph)PR ddPTM_HeLa_A485_30min_R1 2 APSQVSISASPR 12 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;Q8IVL1-6;Q8IVL1-7 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 APSQVSISAS(1)PR;APSQVSIS(0.001)AS(0.999)PR ; 123.63 4.67E-05 694630000 413430 578700 575740 309480 993410 551420 556080 770090 476160 374940 TRUE FALSE FALSE 505396.0772 646373.931 788730.1845 326386.1088 894502.6123 580291.4985 437268.9652 581224.22 571720.9444 281474.3583 1.795531502 2.296386552 2.802138672 1.159558941 3.177918649 2.061614074 1.553494847 2.064927774 2.031165282 1 18.10264398 -9.739814844 0.346430643 0.555018983 2.232403252 0.281947865 0.540926555 14.23097351 1.52642104 7.288113886 0.455891546 1.82E-10 9.739814844 1.677384269 APSQVSISAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 APSQVSISASPR 12 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;Q8IVL1-6;Q8IVL1-7 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 APSQVSIS(0.008)AS(0.992)PR 68.972 0.012914 534730000 729500 656150 720030 263440 900900 633490 697560 778620 589380 653380 TRUE FALSE FALSE 678365.8171 604154.2843 998844.8991 613301.6335 787900.7214 555336.4447 523023.11 601345.2232 640467.9329 489769.3952 1.38507188 1.233548462 2.039418773 1.252225312 1.608717754 1.133873309 1.067896678 1.227812985 1.307692843 1 18.9017431 -6.269818753 24.68556578 1.156721047 1.504563284 0.383723738 0.225641325 593.8300848 1749413.306 0.077967015 0.069894588 5.37E-07 6.269818753 0.347842237 APSRQDVY(ph)GPQPQVR ddPTM_HeLa_A485_30min_R1 1 APSRQDVYGPQPQVR 15 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 APS(0.049)RQDVY(0.951)GPQPQVR 56.404 0.033781 1099900000 212000 215570 242940 238230 271820 261460 277730 229580 198950 399020 TRUE FALSE FALSE 259158.6686 240779.0363 332813.6156 251243.9017 244756.6464 275149.6413 218390.7167 173275.145 238877.4401 299551.6574 0.865155182 0.803798044 1.111039139 0.838733138 0.817076589 0.918538204 0.729058616 0.578448293 0.797449903 1 18.19244529 -6.764685261 24.91122894 0.741109864 0.892439452 0.144525786 0.127449975 118.8463215 912094.0528 0.050874179 0.035908017 1.72E-07 6.764685261 0.151329588 APSS(ph)PVAKPGPVK ddPTM_HeLa_A485_30min_R1 2 APSSPVAKPGPVK 13 1 Q9GZR2;A0A0C4DG31;Q9GZR2-2 Q9GZR2 REXO4 RNA exonuclease 4 1 0 APS(0.023)S(0.977)PVAKPGPVK;APS(0.137)S(0.863)PVAKPGPVK ; 109.79 0.00015953 1618430000 2438630 2135220 1593360 2697830 2785540 2714070 3347860 3634890 2262870 3927330 TRUE FALSE FALSE 2981094.83 2384915.405 2182810.169 2845205.622 2508201.857 2856174.508 2632562.361 2743427.528 2717007.253 2948318.908 1.011116817 0.808906865 0.740357552 0.965026413 0.850722712 0.9687468 0.892902852 0.930505693 0.921544561 1 21.49146115 -5.836083217 1.571567214 0.933192074 0.858305982 0.129010147 0.077045028 0.768472208 3.935328556 0.028883151 0.036751322 1.46E-06 5.836083217 -0.074886092 APSS(ph)PVAKPGPVK ddPTM_HeLa_A486_30min_R1 2 APSSPVAKPGPVK 13 1 Q9GZR2;A0A0C4DG31;Q9GZR2-2 Q9GZR2 REXO4 RNA exonuclease 4 1 0 APS(0.171)S(0.829)PVAKPGPVK;APS(0.166)S(0.834)PVAKPGPVK ; 105.46 0.00020657 1536290000 2457210 2599020 1805040 768810 2684420 2720260 2875500 2851480 2270420 2527630 TRUE FALSE FALSE 2284972.268 2393064.19 2503999.829 1789828.534 2347715.012 2384661.979 2156019.486 2202260.251 2467221.834 1894694.996 1.205984221 1.263033995 1.321584653 0.944652589 1.239099178 1.258599397 1.137924305 1.162329692 1.302173616 1 20.85353419 -10.72953092 2.592276889 0.960018094 1.200981434 0.263110482 0.10227804 14477042.54 11119346.49 3732335.945 0.026152334 1.86E-11 10.72953092 0.240963341 APST(ph)PLLTVR ddPTM_HeLa_A486_30min_R1 1 APSTPLLTVR 10 0 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;F8WF18;F8WAT3;C9IZE1 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 0 APS(0.415)T(0.585)PLLTVR 91.549 0.014588 53086000 174790 182620 161170 63974 232580 180690 184090 185350 162060 177600 TRUE FALSE FALSE 162538.1236 168148.5261 223579.3403 148934.7051 203407.6477 158398.3049 138028.7349 143149.8512 176107.4913 133127.804 1.220917935 1.263060916 1.679433849 1.118734784 1.527912589 1.189821361 1.036813729 1.075281398 1.322845311 1 17.02245239 -6.491064109 11.21507326 1.114736026 1.360522937 0.341079067 0.167712877 1.109271473 389.3310167 0.057702637 0.050266227 3.23E-07 6.491064109 0.245786911 APSVANVGS(ph)HCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 2 APSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 35 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 APS(0.1)VANVGS(0.448)HCDLS(0.448)LKIPEIS(0.003)IQDMTAQVTSPSGK;APS(0.274)VANVGS(0.59)HCDLS(0.135)LKIPEISIQDMTAQVTSPSGK ; 124.33 9.38E-06 603610000 121880 160319 92203 63336 152145 167623 209955 176040 141193 198729 TRUE FALSE FALSE 113336.8414 147614.7386 127906.4709 147449.4088 133061.5554 146943.3785 157422.0383 135959.5349 153431.7229 148965.9649 0.760823732 0.990929295 0.858628822 0.989819446 0.893234609 0.986422493 1.056765137 0.91268858 1.029978378 1 17.18462322 -2.85282041 0.579492688 0.984613441 1.03E-34 0.480982846 0.061801947 15.59563184 1.114708438 0.028237717 14.77485504 0.001403394 2.85282041 -0.984613441 APSVANVGSHCDLS(ph)LKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A485_30min_R1 1 APSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 35 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 APS(0.033)VANVGS(0.165)HCDLS(0.796)LKIPEIS(0.003)IQDMT(0.003)AQVTSPSGK 104.36 5.25E-05 24577000 52201 39694 26982 49301 42952 47695 61595 54790 38106 70250 TRUE FALSE FALSE 63812.93236 44335.86801 36963.76461 51994.18879 38675.54807 50192.23645 48434.72507 41352.66659 45753.52467 52737.96786 1.209999834 0.840682146 0.700894747 0.985896706 0.733353021 0.951728678 0.918403326 0.784115662 0.867563286 1 15.68655436 -4.259817818 24.68905172 0.856947021 1.209999972 0.528670371 0.097551047 88.7554358 1351197.667 0.022895863 0.141264597 5.50E-05 4.259817818 0.353052951 APTAALPQGVVMAAS(ph)PGSLHS(ph)PQQLAEEATR ddPTM_HeLa_A485_30min_R1 1 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 E9PAR2;Q03060-22;Q03060-15;Q03060-16;Q03060-31;Q03060-20;Q03060-21;Q03060-32;Q03060-26;Q03060-29;Q03060-7;Q03060-12;G5E998;C9IYM9;C9K092;J3KR46;Q03060;Q03060-6;Q03060-2;Q03060-23;Q03060-9;Q03060-11;Q03060-24;Q03060-27;Q03060-8;E9PB41;Q03060-10;Q03060-28;Q03060-19;Q03060-14;Q03060-13;Q03060-17;Q03060-30;Q03060-1 E9PAR2 CREM cAMP-responsive element modulator 2 0 APT(0.001)AALPQGVVMAAS(0.988)PGS(0.123)LHS(0.878)PQQLAEEAT(0.009)R 49.518 0.029832 76208000 30776 37950 42255 28340 54970 36310 44560 49539 41724 39207 TRUE FALSE FALSE 37622.01502 42387.92238 57886.88288 29888.14244 49496.99379 38211.13545 35039.39198 37389.48258 50097.62408 29433.41645 1.278207546 1.440129196 1.966706209 1.01544931 1.681659819 1.298222907 1.190462957 1.270307259 1.702066227 1 14.84516739 APTAALPQGVVMAAS(ph)PGSLHS(ph)PQQLAEEATR ddPTM_HeLa_A486_30min_R1 1 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 E9PAR2;Q03060-22;Q03060-15;Q03060-16;Q03060-31;Q03060-20;Q03060-21;Q03060-32;Q03060-26;Q03060-29;Q03060-7;Q03060-12;G5E998;C9IYM9;C9K092;J3KR46;Q03060;Q03060-6;Q03060-2;Q03060-23;Q03060-9;Q03060-11;Q03060-24;Q03060-27;Q03060-8;E9PB41;Q03060-10;Q03060-28;Q03060-19;Q03060-14;Q03060-13;Q03060-17;Q03060-30;Q03060-1 E9PAR2 CREM cAMP-responsive element modulator 2 0 APTAALPQGVVMAAS(0.987)PGS(0.094)LHS(0.917)PQQLAEEAT(0.001)R 67.214 0.0022817 63902000 26988 32093 19253 9066.1 36592 35622 37508 29332 24383 26196 TRUE FALSE FALSE 25096.28057 29549.8338 26708.27721 21106.33898 32002.29015 31227.31982 28123.10168 22653.74391 26496.53807 19636.35109 1.278052142 1.504853608 1.360144616 1.074860542 1.629747299 1.590281192 1.432195908 1.153663621 1.349361597 1 14.26123925 -8.140986525 1.010921681 1.008821663 1.405170969 0.332486566 0.164856955 0.863834734 1.879242065 0.164821339 0.054206084 7.23E-09 8.140986525 0.396349306 APTAALPQGVVMAAS(ph)PGSLHSPQQLAEEATR ddPTM_HeLa_A485_30min_R1 2 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 E9PAR2;Q03060-22;Q03060-15;Q03060-16;Q03060-31;Q03060-20;Q03060-21;Q03060-32;Q03060-26;Q03060-29;Q03060-7;Q03060-12;G5E998;C9IYM9;C9K092;J3KR46;Q03060;Q03060-6;Q03060-2;Q03060-23;Q03060-9;Q03060-11;Q03060-24;Q03060-27;Q03060-8;E9PB41;Q03060-10;Q03060-28;Q03060-19;Q03060-14;Q03060-13;Q03060-17;Q03060-30;Q03060-1 E9PAR2 CREM cAMP-responsive element modulator 1 0 APTAALPQGVVMAAS(0.53)PGS(0.47)LHSPQQLAEEATR;APTAALPQGVVMAAS(0.868)PGS(0.132)LHSPQQLAEEATR ; 285.81 3.69E-78 942840000 102409 177586 199349 80367 203391 184366 174058 208432 183667 106601 TRUE FALSE FALSE 125189.5287 198353.1379 273096.4907 84757.24571 183140.6779 194019.1187 136869.0864 157313.7252 220527.2822 80027.33255 1.564334644 2.478567404 3.412540216 1.059103721 2.2884766 2.424410667 1.710279251 1.965749953 2.755649541 1 16.2882052 -10.7396988 2.677638659 0.761975129 2.185778348 0.243920812 0.625541013 37793364.15 28821385.64 59614637.46 0.155762531 1.82E-11 10.7396988 1.423803219 APTAALPQGVVMAAS(ph)PGSLHSPQQLAEEATR ddPTM_HeLa_A486_30min_R1 2 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 E9PAR2;Q03060-22;Q03060-15;Q03060-16;Q03060-31;Q03060-20;Q03060-21;Q03060-32;Q03060-26;Q03060-29;Q03060-7;Q03060-12;G5E998;C9IYM9;C9K092;J3KR46;Q03060;Q03060-6;Q03060-2;Q03060-23;Q03060-9;Q03060-11;Q03060-24;Q03060-27;Q03060-8;E9PB41;Q03060-10;Q03060-28;Q03060-19;Q03060-14;Q03060-13;Q03060-17;Q03060-30;Q03060-1 E9PAR2 CREM cAMP-responsive element modulator 1 0 APTAALPQGVVMAAS(0.999)PGS(0.001)LHSPQQLAEEATR;APTAALPQGVVMAAS(0.998)PGS(0.002)LHSPQQLAEEATR ; 266.37 4.59E-64 721890000 155974 176050 164406 16500.3 211933 122388 143036 140958 166655 122545 TRUE FALSE FALSE 145041.0281 162099.1568 228068.4061 38413.53228 185350.3869 107289.0129 107246.8799 108864.9405 181100.7896 91858.93437 1.578953959 1.764653139 2.482811364 0.418179598 2.017772013 1.167975806 1.167517135 1.185131759 1.971509803 1 16.48713243 -5.240903555 24.98810895 1.30511051 1.924390723 0.283550928 0.48378953 1114.481744 1356106.167 0.125520737 0.217098315 5.74E-06 5.240903555 0.619280212 APTAALPQGVVMAASPGS(ph)LHSPQQLAEEATR ddPTM_HeLa_A486_30min_R1 1 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 E9PAR2;Q03060-22;Q03060-15;Q03060-16;Q03060-31;Q03060-20;Q03060-21;Q03060-32;Q03060-26;Q03060-29;Q03060-7;Q03060-12;G5E998;C9IYM9;C9K092;J3KR46;Q03060;Q03060-6;Q03060-2;Q03060-23;Q03060-9;Q03060-11;Q03060-24;Q03060-27;Q03060-8;E9PB41;Q03060-10;Q03060-28;Q03060-19;Q03060-14;Q03060-13;Q03060-17;Q03060-30;Q03060-1 E9PAR2 CREM cAMP-responsive element modulator 1 0 APTAALPQGVVMAAS(0.181)PGS(0.683)LHS(0.135)PQQLAEEAT(0.001)R 66.72 0.0017775 203590000 33041 32122 25423 39093 34618 32228 43688 42391 26451 56351 TRUE FALSE FALSE 30724.99652 29576.53573 35267.46645 91010.47965 30275.88764 28252.03703 32756.80032 32739.49469 28743.79398 42240.34282 0.727385113 0.700196394 0.834923774 2.154586672 0.716752886 0.668840145 0.775486138 0.775076444 0.680482024 1 15.36633392 APTK(ac)PPVGPK ddPTM_HeLa_A485_30min_R1 2 APTKPPVGPK 10 1 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 0 1 ; APTK(1)PPVGPK;APTK(1)PPVGPK 117.02 0.015291 292060000 657800 686490 654770 692500 892990 759950 959940 898240 776720 1030140 FALSE TRUE FALSE 804125.3406 766769.0338 896996.6703 730329.5215 804080.7801 799739.8069 754840.977 677945.2316 932600.5795 773345.0563 1.039801488 0.991496652 1.159891905 0.944377307 1.039743868 1.034130626 0.976072674 0.876640028 1.205930744 1 19.56075274 -5.302152264 24.99962514 1.00655306 1.056507068 0.065994741 0.088613037 1481.883652 909942.4884 0.024084975 0.035723929 4.99E-06 5.302152264 0.049954009 APTK(ac)PPVGPK ddPTM_HeLa_A486_30min_R1 2 APTKPPVGPK 10 1 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 0 1 ; APTK(1)PPVGPK;APTK(1)PPVGPK 130.98 0.0073871 306770000 731140 824640 603710 272590 858450 786150 898000 893950 645780 887970 FALSE TRUE FALSE 679890.8616 759292.5231 837482.6799 634603.2959 750775.1963 689162.806 673310.9019 690417.0998 701756.7304 665616.5323 1.021445275 1.140735673 1.258205948 0.953406752 1.127939527 1.035375134 1.011559763 1.037259543 1.054295824 1 19.34433174 -5.273665247 24.99262802 1.036318488 1.140189645 0.351163099 0.067493809 845.7766759 1728969.725 0.018863874 0.02821545 5.33E-06 5.273665247 0.103871158 APTQTPTQTIILNS(ph)DDETLATLHTALQSSHGVLGPER ddPTM_HeLa_A485_30min_R1 1 APTQTPTQTIILNSDDETLATLHTALQSSHGVLGPER 37 0 Q9H4Z2-2;Q9H4Z2 Q9H4Z2-2 ZNF335 Zinc finger protein 335 1 0 APTQTPTQTIILNS(0.992)DDET(0.007)LATLHTALQSSHGVLGPER 117.65 1.54E-05 116610000 12915 23390 28379 12515 29447 19026 21686 27113 21163 15203 TRUE FALSE FALSE 15787.89719 26125.25703 38877.57305 13198.66276 26515.15329 20022.17194 17052.60894 20463.49424 25410.21998 11413.17189 1.383304952 2.289044385 3.406377598 1.156441249 2.323206339 1.754303898 1.494116544 1.792971703 2.226394225 1 13.47841217 -5.296903996 24.99848043 1.733620969 2.352524489 0.210424485 0.598089414 979.8597229 690686.4435 0.166676434 0.247232369 5.05E-06 5.296903996 0.61890352 APTQTPTQTIILNSDDET(ph)LATLHTALQSSHGVLGPER ddPTM_HeLa_A486_30min_R1 1 APTQTPTQTIILNSDDETLATLHTALQSSHGVLGPER 37 0 Q9H4Z2-2;Q9H4Z2 Q9H4Z2-2 ZNF335 Zinc finger protein 335 1 0 APTQTPTQTIILNS(0.14)DDET(0.854)LAT(0.004)LHT(0.001)ALQS(0.001)S(0.001)HGVLGPER 167.07 3.11E-14 111290000 40674 52990 49876 6927.5 61094 27918 34795 38340 38804 23928 TRUE FALSE FALSE 37822.96264 48790.87941 69189.32293 16127.5701 53431.02084 24473.76101 26088.92298 29610.81896 42167.56196 17936.27305 2.108741461 2.720235094 3.857508342 0.899159488 2.978936632 1.36448419 1.454534222 1.650890286 2.350965657 1 14.13059253 -5.2659364 24.99999999 1.731073223 2.877968968 0.386173895 0.704369109 405.2744357 2253018.823 0.19200079 0.295938196 5.42E-06 5.2659364 1.146895745 APVDEDRLS(ph)PLVAADSLLEHVR ddPTM_HeLa_A485_30min_R1 6 APVDEDRLSPLVAADSLLEHVR 22 1 Q01094 Q01094 E2F1 Transcription factor E2F1 1 0 APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR ;;;;; 304.86 3.55E-88 906923000 134255 184289 211179 138882 226403 183954 218542 223356 171985 206367 TRUE FALSE FALSE 164119.5616 205839.9954 289302.9 146468.772 203861.5224 193585.547 171848.7164 168577.5908 206500.812 154923.5048 1.059358693 1.328655685 1.867391913 0.945426404 1.31588504 1.24955569 1.10924883 1.088134373 1.332921123 1 17.24119652 -5.335373358 25 1.161931085 1.409549906 0.239415738 0.219256489 206.3379723 69770.03447 0.061630948 0.091413484 4.62E-06 5.335373358 0.247618822 APVDEDRLS(ph)PLVAADSLLEHVR ddPTM_HeLa_A486_30min_R1 7 APVDEDRLSPLVAADSLLEHVR 22 1 Q01094 Q01094 E2F1 Transcription factor E2F1 1 0 APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR ;;;;;; 317.65 1.06E-102 796447900 161298 210878.9 194012.4 49518.6 240157.6 178597.4 203087.6 194608.8 182619.4 183041.2 TRUE FALSE FALSE 149991.8431 194168.088 269139.1971 115281.8033 210034.7944 156563.8686 152272.9344 150300.6245 198448.9966 137206.4921 1.09318328 1.415152337 1.961563137 0.840206623 1.530793413 1.141082074 1.109808524 1.095433767 1.446352819 1 17.06598922 -5.278579727 24.99975833 1.182006258 1.482484961 0.227344726 0.272299931 1255.551201 1831259.576 0.075416364 0.112166469 5.27E-06 5.278579727 0.300478703 APVHFVEPLS(ph)PTGVAGHR ddPTM_HeLa_A485_30min_R1 3 APVHFVEPLSPTGVAGHR 18 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 APVHFVEPLS(0.931)PT(0.069)GVAGHR;APVHFVEPLS(0.973)PT(0.027)GVAGHR;APVHFVEPLS(1)PTGVAGHR ;; 189.51 3.46E-18 2522710000 803760 879990 1015150 870580 1164370 854880 947670 947040 874360 1090640 TRUE FALSE FALSE 982553.6391 982897.1756 1390696.229 918137.581 1048441.234 899640.1949 745192.5627 714776.9551 1049836.032 818763.5197 1.200045697 1.200465277 1.698532232 1.121370895 1.280517768 1.098779041 0.910143826 0.872995606 1.282221309 1 19.6430873 -6.223712233 1.846942504 1.005041252 1.325717305 0.365946635 0.177684739 0.374465681 2.517661913 0.07299597 0.06858034 5.97E-07 6.223712233 0.320676052 APVHFVEPLS(ph)PTGVAGHR ddPTM_HeLa_A486_30min_R1 4 APVHFVEPLSPTGVAGHR 18 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 APVHFVEPLS(1)PTGVAGHR;APVHFVEPLS(1)PTGVAGHR;APVHFVEPLS(0.976)PT(0.024)GVAGHR;APVHFVEPLS(0.996)PT(0.004)GVAGHR ;;; 208.92 1.12E-25 3665140000 1329530 1563460 1424650 453258 1652240 1213160 1426260 1434230 1282310 1275880 TRUE FALSE FALSE 1236336.813 1439565.736 1976312.633 1055207.53 1445000.653 1063492.654 1069394.663 1107687.138 1393461.663 956391.3434 1.292710166 1.505205736 2.066426727 1.103321917 1.510888469 1.111984818 1.118155941 1.158194442 1.456999452 1 19.86724155 -5.308040249 24.99994183 1.21991073 1.609824789 0.394048574 0.234229862 424.9427966 227967.9361 0.065733314 0.097498646 4.92E-06 5.308040249 0.389914059 APVHFVEPLS(ph)PTGVAGHRK ddPTM_HeLa_A485_30min_R1 1 APVHFVEPLSPTGVAGHRK 19 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 APVHFVEPLS(0.987)PT(0.013)GVAGHRK 115.46 2.93E-05 364630000 212490 241680 190920 193840 260900 219670 259560 284270 232750 293350 TRUE FALSE FALSE 259757.6674 269942.3737 261549.2528 204428.9884 234923.8799 231171.5815 204102.8856 214552.3368 279460.7901 220223.2437 1.179519759 1.22576695 1.187655074 0.928280707 1.066753336 1.049714724 0.926799924 0.974249281 1.26898862 1 17.74860722 -5.159130889 7.288610193 1.027791699 1.202882532 0.4076056 0.092237821 0.257973784 16.13798778 0.024859202 0.043358014 6.93E-06 5.159130889 0.175090833 APVHFVEPLS(ph)PTGVAGHRK ddPTM_HeLa_A486_30min_R1 2 APVHFVEPLSPTGVAGHRK 19 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 APVHFVEPLS(0.992)PT(0.008)GVAGHRK;APVHFVEPLS(0.974)PT(0.026)GVAGHRK ; 122.53 6.58E-06 614730000 584790 568970 475140 193575 653490 548270 680990 654680 493550 634810 TRUE FALSE FALSE 543799.2409 523882.745 659126.9327 450652.3827 571523.1906 480630.0218 510599.0992 505623.6556 536331.3114 475849.4441 1.14279684 1.100942224 1.385158564 0.947048249 1.20105886 1.010046408 1.073026575 1.062570655 1.127102948 1 18.86014566 -5.280712786 24.99977654 1.06705266 1.19876356 0.336466951 0.095504305 983.2867133 1275431.271 0.025729311 0.038231543 5.24E-06 5.280712786 0.1317109 APVPAPGLRPEEAPGLPAAPPPAPAAPAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 APVPAPGLRPEEAPGLPAAPPPAPAAPASPR 31 1 Q9C009 Q9C009 FOXQ1 Forkhead box protein Q1 1 0 APVPAPGLRPEEAPGLPAAPPPAPAAPAS(1)PR;APVPAPGLRPEEAPGLPAAPPPAPAAPAS(1)PR;APVPAPGLRPEEAPGLPAAPPPAPAAPAS(1)PR;APVPAPGLRPEEAPGLPAAPPPAPAAPAS(1)PR ;;; 165.97 1.09E-14 1207940000 179311 272680 342493.3 208023 286134.3 317407.1 370122.5 382677.5 299769 396972.8 TRUE FALSE FALSE 219198.1133 304567.554 469195.824 219386.7697 257645.7644 334026.045 291042.8043 288825.2431 359929.8887 298014.7867 0.735527642 1.021988061 1.574404509 0.736160686 0.864540204 1.120837153 0.976605247 0.969164135 1.20775849 1 18.18502439 -9.470758391 8.88944287 1.00000001 1.026019364 0.000725008 0.233005435 0 0 0.225937033 0.054797779 3.38E-10 9.470758391 0.026019354 APVPAPGLRPEEAPGLPAAPPPAPAAPAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 APVPAPGLRPEEAPGLPAAPPPAPAAPASPR 31 1 Q9C009 Q9C009 FOXQ1 Forkhead box protein Q1 1 0 APVPAPGLRPEEAPGLPAAPPPAPAAPAS(1)PR;APVPAPGLRPEEAPGLPAAPPPAPAAPAS(1)PR ; 132.49 9.05E-07 637300000 180635 205050 183941 59742 284540 194374 206987 195333 219720 246650 TRUE FALSE FALSE 167973.4193 188801.0912 255167.8813 139082.3952 248850.34 170394.1121 155196.6633 150859.94 238765.5065 184887.2346 0.908518209 1.021168885 1.380127091 0.752255263 1.345957391 0.921611016 0.839412541 0.815956496 1.29141153 1 17.49628609 APVPEPGLDLSLS(ph)PRPDS(ph)PQPR ddPTM_HeLa_A486_30min_R1 1 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 2 0 APVPEPGLDLS(0.445)LS(0.555)PRPDS(1)PQPR 79.875 0.0043485 111580000 121850 164140 152580 68322 208660 150270 181050 174840 133970 185670 TRUE FALSE FALSE 113308.9442 151132.9486 211663.0622 159057.0688 182487.9171 131731.2152 135749.375 135032.7487 145582.6275 139177.0235 0.814135418 1.085904446 1.520819004 1.142839995 1.311192843 0.946501168 0.975372024 0.970222996 1.046024867 1 17.08656153 -6.277553978 24.19644559 0.984997371 1.187457703 0.234470155 0.168480213 817.1962794 1227034.701 0.061947773 0.054815451 5.28E-07 6.277553978 0.202460332 APVPEPGLDLSLSPRPDS(ph)PQPR ddPTM_HeLa_A485_30min_R1 4 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLSLSPRPDS(1)PQPR ;;; 159.36 3.58E-11 7044700000 2121390 2903230 3137390 2049980 3446870 3001220 3270970 3537960 2812210 2935070 TRUE FALSE FALSE 2593285.887 3242737.494 4298041.119 2161965.217 3103687.52 3158359.238 2572100.538 2670269.763 3376594.752 2203411.065 1.176941483 1.471689757 1.950630632 0.981190142 1.408583069 1.433395379 1.167326687 1.211879982 1.532439773 1 21.07130724 -13.20981747 0.149242557 4.32E-11 1.494506789 0.155339179 0.252932058 192.9148978 2.130864088 59.42062936 1.361830134 6.17E-14 13.20981747 1.494506789 APVPEPGLDLSLSPRPDS(ph)PQPR ddPTM_HeLa_A486_30min_R1 3 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLSLSPRPDS(1)PQPR;APVPEPGLDLS(0.003)LS(0.002)PRPDS(0.995)PQPR ;; 180.83 9.82E-20 4983860000 1120140 1312000 1278656 377041 1558440 1141619 1308660 1402430 1155768 1298319 TRUE FALSE FALSE 1041623.97 1208032.342 1773785.847 877770.5026 1362965.923 1000777.655 981219.4264 1083127.304 1255950.901 973211.4718 1.070295615 1.241284527 1.822610911 0.901931932 1.400482796 1.028324967 1.008228381 1.112941365 1.290522088 1 19.8923938 APVPGT(ph)PDSLSSGSSR ddPTM_HeLa_A485_30min_R1 1 APVPGTPDSLSSGSSR 16 0 Q9UJZ1;Q9UJZ1-2;A0A087WYB4 Q9UJZ1 STOML2 "Stomatin-like protein 2, mitochondrial" 1 0 APVPGT(0.98)PDS(0.02)LSSGSSR 148.7 2.88E-07 433700000 237400 358820 340330 266600 340970 314000 343090 414030 291320 403620 TRUE FALSE FALSE 290208.811 400780.8777 466232.2293 281163.6829 307021.8296 330440.5545 269786.0187 312488.4933 349785.2519 303004.9621 0.95776917 1.322687506 1.53869503 0.927917751 1.013256771 1.090545027 0.890368319 1.03129827 1.154387867 1 18.20898189 -5.28905431 24.97197085 1.014532925 1.278014369 0.386398755 0.148747219 704.8106569 637353.3202 0.04236854 0.062857081 5.14E-06 5.28905431 0.263481444 APVPGTPDS(ph)LSSGSSR ddPTM_HeLa_A485_30min_R1 1 APVPGTPDSLSSGSSR 16 0 Q9UJZ1;Q9UJZ1-2;A0A087WYB4 Q9UJZ1 STOML2 "Stomatin-like protein 2, mitochondrial" 1 0 APVPGT(0.411)PDS(0.553)LS(0.035)S(0.001)GSSR 164.93 6.09E-12 360370000 278950 421700 345110 283940 376270 398300 433180 438380 343600 404290 TRUE FALSE FALSE 341001.4651 471014.1467 472780.5502 299450.9232 338807.2376 419154.3721 340627.5542 330866.6176 412557.3683 303507.9434 1.123533906 1.551900558 1.557720516 0.986632903 1.116304351 1.381032626 1.122301942 1.090141543 1.359296774 1 18.21137475 -1.000000001 0.065506169 0.740636693 2.338293125 0.156409377 0.187801193 511.7201653 2.4942995 11.36116095 76.41182332 0.1 1.000000001 1.597656432 APVPSTCSSTFPEELS(ph)PPSHQAK ddPTM_HeLa_A485_30min_R1 4 APVPSTCSSTFPEELSPPSHQAK 23 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1;F5H763;F5H0Z7 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(0.999)PPS(0.001)HQAK;APVPSTCSSTFPEELS(1)PPSHQAK ;;; 230.84 8.90E-39 19518810000 656867 737966 693466 782090 977525 790400 969658 936546 731757 1031040 TRUE FALSE FALSE 802984.798 824264.7042 950007.9309 824813.5963 880199.1787 831784.1218 762482.6469 706856.6251 878613.9178 774020.7029 1.037420311 1.064912994 1.227367598 1.065622138 1.137177824 1.074627744 0.98509335 0.913227027 1.135129738 1 19.56201263 -6.61700244 4.350693635 1.001691211 1.108490344 0.298932388 0.070542534 0.258699063 8.863459784 0.027665429 0.021093046 2.42E-07 6.61700244 0.106799133 APVPSTCSSTFPEELS(ph)PPSHQAK ddPTM_HeLa_A486_30min_R1 5 APVPSTCSSTFPEELSPPSHQAK 23 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1;F5H763;F5H0Z7 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 APVPS(0.002)TCSST(0.001)FPEELS(0.985)PPS(0.011)HQAK;APVPSTCSSTFPEELS(0.999)PPS(0.001)HQAK;APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(1)PPSHQAK;APVPSTCSSTFPEELS(1)PPSHQAK ;;;; 237.33 9.01E-49 21565600000 1076270 1080010 751010 368745 1172090 1038350 1275910 1234660 963860 1262980 TRUE FALSE FALSE 1000829.031 994426.0743 1041821.185 858456.9953 1025075.543 910248.9342 956663.8228 953554.8704 1047408.161 946721.5874 1.057152434 1.05038914 1.100451493 0.906768164 1.082763461 0.961474784 1.010501752 1.007217838 1.106352886 1 19.85258069 APVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_A485_30min_R1 5 APVQPQQSPAAAPGGTDEKPSGK 23 1 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK ;;;; 202.81 4.08E-29 5068350000 3862480 2677970 2203890 5923480 4156540 3501070 5275390 4222540 3248390 7708580 TRUE FALSE FALSE 4721675.351 2991135.296 3019200.623 6247064.713 3742700.283 3684380.612 4148259.831 3186955.444 3900312.077 5786972.872 0.815914547 0.51687391 0.521723652 1.079504752 0.64674578 0.636668029 0.716827247 0.550712007 0.6739814 1 22.46437745 -10.78431328 2.38239248 1.09773451 0.680762033 0.263172679 0.158358946 19833915.97 12609990.22 11249973.81 0.041125143 1.64E-11 10.78431328 -0.416972476 APVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_A486_30min_R1 4 APVQPQQSPAAAPGGTDEKPSGK 23 1 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK ;;; 242.74 3.84E-49 4438920000 1756210 1937620 958915 893767 1744060 2274290 2673550 2463790 1511380 2311190 TRUE FALSE FALSE 1633108.748 1784075.935 1330232.569 2080734.744 1525303.732 1993711.223 2004599.512 1902838.801 1642387.635 1732452.981 0.942656895 1.029797607 0.767831845 1.201033891 0.880430089 1.150802501 1.157087398 1.098349463 0.94801282 1 20.72438477 -5.267045116 24.99935609 1.066409075 0.925065667 0.27128987 0.111133069 624.9183586 2786888.503 0.030375534 0.046534756 5.41E-06 5.267045116 -0.141343408 APVSGS(ph)RS(ph)PDREASGSGGR ddPTM_HeLa_A486_30min_R1 1 APVSGSRSPDREASGSGGR 19 2 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein 2 0 APVS(0.543)GS(0.672)RS(0.773)PDREAS(0.009)GS(0.002)GGR 77.689 0.011985 1005700000 542790 653750 595330 212790 830860 587220 657390 743630 551540 635970 TRUE FALSE FALSE 504743.224 601944.4691 825857.7195 495385.8738 726645.7913 514774.7668 492904.0688 574321.6823 599347.9313 476718.9725 1.058785685 1.262682007 1.732378544 1.039157035 1.524264469 1.079828571 1.033951022 1.204738463 1.257235323 1 18.86277952 -6.295785652 24.92567434 1.122871821 1.327001225 0.207951288 0.202925412 1026.536462 744971.7608 0.07071412 0.062367075 5.06E-07 6.295785652 0.204129404 APVSGSRS(ph)PDREASGSGGR ddPTM_HeLa_A485_30min_R1 5 APVSGSRSPDREASGSGGR 19 2 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 APVS(0.227)GS(0.227)RS(0.546)PDREASGSGGR;APVS(0.137)GS(0.114)RS(0.68)PDREAS(0.058)GS(0.012)GGR;APVS(0.1)GS(0.1)RS(0.771)PDREAS(0.029)GSGGR;APVS(0.047)GS(0.047)RS(0.868)PDREAS(0.031)GS(0.006)GGR;APVS(0.13)GS(0.13)RS(0.739)PDREAS(0.001)GS(0.001)GGR ;;;; 126.93 3.56E-06 785815000 182507.9 351852 357890 148441.3 486430 401890 420568 646437 335809 264248 TRUE FALSE FALSE 223106.1527 392998.0307 490288.404 156550.2723 437999.3212 422932.339 330710.2111 487897.3122 403202.7861 198375.8367 1.124663953 1.981078125 2.471512721 0.789159985 2.207926774 2.131975073 1.667089181 2.459459379 2.032519649 1 17.59787678 APVSGSRS(ph)PDREASGSGGR ddPTM_HeLa_A486_30min_R1 3 APVSGSRSPDREASGSGGR 19 2 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 APVS(0.014)GS(0.014)RS(0.973)PDREASGSGGR;APVS(0.013)GS(0.013)RS(0.895)PDREAS(0.073)GS(0.006)GGR;APVS(0.007)GS(0.007)RS(0.979)PDREAS(0.007)GS(0.001)GGR ;; 127.3 2.19E-06 1139110000 312920 331163 427569 147783 736270 326318 434331 539450 323110 348536 TRUE FALSE FALSE 290985.9239 304920.4378 593135.1675 344046.2925 643920.1512 286060.2029 325656.7899 416629.0111 351117.435 261260.317 1.113777734 1.16711348 2.270284191 1.316871603 2.464668797 1.094924044 1.246483942 1.59468922 1.343937108 1 17.99512848 APVSGSRSPDREAS(ph)GSGGR ddPTM_HeLa_A485_30min_R1 2 APVSGSRSPDREASGSGGR 19 2 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 APVS(0.001)GS(0.001)RS(0.134)PDREAS(0.432)GS(0.432)GGR;APVS(0.001)GS(0.008)RS(0.393)PDREAS(0.583)GS(0.015)GGR ; 136.34 1.26E-06 1856710000 201225 398160 380570 211550 618060 481600 568140 794220 372680 339370 TRUE FALSE FALSE 245986.807 444721.3485 521358.6798 223106.4408 556523.7763 506815.8313 446752.2477 599436.2997 447473.4576 254771.3046 0.965520067 1.745570794 2.046379126 0.875712597 2.184405253 1.989297154 1.753542254 2.352840719 1.756373066 1 17.95884327 -5.795959651 24.99997051 1.910252652 1.47796196 0.154255276 0.466272919 322.7505195 233737.8558 0.139101244 0.157733134 1.60E-06 5.795959651 -0.432290692 APVSGSRSPDREAS(ph)GSGGR ddPTM_HeLa_A486_30min_R1 1 APVSGSRSPDREASGSGGR 19 2 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 APVS(0.011)GS(0.034)RS(0.224)PDREAS(0.602)GS(0.128)GGR 105.71 5.18E-05 816850000 221910 220590 304180 110100 504210 272670 329490 393560 225020 235560 TRUE FALSE FALSE 206355.2549 203109.645 421966.6422 256318.3641 440967.2802 239030.7477 247048.117 303954.9794 244524.9148 176574.2428 1.168660002 1.150279009 2.38974063 1.451618085 2.497347707 1.353712433 1.399117522 1.721400441 1.38482777 1 17.42991538 -8.297112852 0.839410004 0.996933807 1.67796934 0.164326223 0.442012504 1.996259005 2.720889987 0.440468572 0.152226847 5.05E-09 8.297112852 0.681035533 APYFSGSSTFSPTILS(ph)SDKETIEIIDLAK ddPTM_HeLa_A486_30min_R1 1 APYFSGSSTFSPTILSSDKETIEIIDLAK 29 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 APYFSGSSTFSPT(0.001)ILS(0.492)S(0.492)DKET(0.014)IEIIDLAK 70.073 0.0025754 37143000 27280 26042 12657 16864 20662 28967 35895 33656 19623 46432 TRUE FALSE FALSE 25367.81287 23978.33708 17558.12937 39260.24426 18070.37929 25393.34605 26913.69134 25993.26351 21323.93744 34805.12498 0.728852802 0.688931216 0.504469654 1.128001818 0.519187312 0.729586406 0.773268056 0.746822875 0.612666596 1 15.08701213 -11.1104803 2.535601847 1.538988727 0.717224339 0.213807317 0.164091193 30723098.31 6581626.56 95823899.94 0.038517928 7.75E-12 11.1104803 -0.821764387 APYFSGSSTFSPTILSS(ph)DKETIEIIDLAK ddPTM_HeLa_A486_30min_R1 1 APYFSGSSTFSPTILSSDKETIEIIDLAK 29 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 APYFSGSSTFS(0.002)PT(0.127)ILS(0.111)S(0.729)DKET(0.03)IEIIDLAK 152 8.89E-10 33690000 23045 20650 9687 16620 19658 28909 32942 30849 19362 37813 TRUE FALSE FALSE 21429.6645 19013.61879 13438.06583 38692.19993 17192.31034 25342.50151 24699.56318 23825.35613 21040.31375 28344.37868 0.756046366 0.670807394 0.474099855 1.365074901 0.606550968 0.89409268 0.871409582 0.840567239 0.74230993 1 14.79077502 APYS(ph)PTTSK ddPTM_HeLa_A486_30min_R1 1 APYSPTTSK 9 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 APYS(0.777)PT(0.211)T(0.011)S(0.002)K 78.513 0.0092121 856760000 1301400 1558500 980310 518380 1428500 1612600 1664500 1597400 1309600 1752300 TRUE FALSE FALSE 1210178.58 1434998.784 1359912.286 1206814.837 1249324.21 1413653.808 1248024.495 1233706.891 1423117.182 1313512.674 0.92132996 1.092489484 1.035324829 0.918769085 0.951132208 1.076239183 0.950142712 0.939242472 1.083443815 1 20.32499869 -7.766987662 24.99996389 1.041721875 0.989270244 0.112567364 0.062365716 358.8453307 1616834.381 0.054914517 0.015779927 1.71E-08 7.766987662 -0.052451632 APYTCGGDSDQYVLMS(ph)SPVGR ddPTM_HeLa_A485_30min_R1 2 APYTCGGDSDQYVLMSSPVGR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 APYTCGGDSDQYVLMS(0.5)S(0.5)PVGR;APYTCGGDSDQYVLMS(0.896)S(0.104)PVGR ; 177 1.64E-14 249405000 146625 188677 210441 138948 211197 153004 168488 135192 162435 194612 TRUE FALSE FALSE 179241.2254 210741.1339 288291.8831 146538.3774 190169.4851 161015.0529 132489.1624 102035.95 195034.2146 146098.81 1.226849318 1.442456197 1.97326647 1.0030087 1.301649789 1.10209695 0.90684628 0.698403704 1.334947318 1 17.1565849 -5.774079684 1.420290194 0.985969176 1.509059983 0.374893609 0.26364005 0.416670413 1.754620082 0.101548253 0.139504887 1.68E-06 5.774079684 0.523090806 APYTCGGDSDQYVLMSS(ph)PVGR ddPTM_HeLa_A485_30min_R1 2 APYTCGGDSDQYVLMSSPVGR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 APYTCGGDSDQYVLMS(0.156)S(0.844)PVGR;APYTCGGDSDQYVLMS(0.002)S(0.998)PVGR ; 336.49 1.90E-114 259828000 95552 113894 128605 100731 143267 95147 116547 102754 100795 120866 TRUE FALSE FALSE 116807.2127 127212.9126 176181.3412 106233.6795 129002.8344 100128.7498 91645.78135 77553.42039 121023.632 90736.33057 1.287325727 1.40200636 1.94168466 1.170795411 1.421732989 1.103513324 1.010023006 0.854711888 1.333794646 1 16.4693927 -6.109106098 1.508593773 1.033841214 1.498488005 0.439791609 0.21737224 0.362496348 1.664714858 0.091441952 0.093418398 7.78E-07 6.109106098 0.464646791 APYTCGGDSDQYVLMSS(ph)PVGR ddPTM_HeLa_A486_30min_R1 3 APYTCGGDSDQYVLMSSPVGR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 APYTCGGDSDQYVLMS(0.047)S(0.953)PVGR;APYTCGGDSDQYVLMS(0.005)S(0.995)PVGR;APYTCGGDSDQYVLMS(0.248)S(0.752)PVGR ;; 322.67 1.71E-102 369980000 288498 343571 337184 99922 382505 316826 303620 310118 252955 272897 TRUE FALSE FALSE 268275.78 316345.1827 467750.6749 232623.4658 334527.6562 277739.2294 227651.0646 239510.9012 274881.3431 204561.8149 1.311465584 1.546452757 2.286598186 1.137179321 1.63533774 1.357727636 1.112871748 1.170848534 1.343756865 1 17.64217734 -6.30106476 1.211048066 1.158745999 1.637359326 0.317906725 0.290678946 0.575215378 1.729645215 0.150438264 0.130817829 5.00E-07 6.30106476 0.478613327 AQAALAVNISAAR ddPTM_HeLa_A485_30min_R1 1 AQAALAVNISAAR 13 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 0 159.44 4.35E-06 23682000 30899 31267 28559 41420 44979 36445 53644 51709 29133 50870 FALSE FALSE TRUE 37772.37595 34923.40366 39124.16254 43682.66972 40500.73283 38353.20385 42182.52117 39027.28667 34979.72588 38189.04519 0.989089299 0.914487479 1.024486534 1.143853414 1.060532742 1.00429858 1.104571244 1.021949789 0.915962305 1 15.22087123 -4.887151316 6.456855144 1.042604305 0.95288758 0.224045828 0.060821996 0.279508859 14.65016973 0.016376535 0.034748503 1.30E-05 4.887151316 -0.089716724 AQAVS(ph)EEEEEEEGK ddPTM_HeLa_A485_30min_R1 4 AQAVSEEEEEEEGK 14 0 G3V529;Q9GZR7-2;Q9GZR7 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK ;;; 267.39 3.46E-42 2155770000 678110 598646 415446 1011510 586223 589955 875150 785840 521073 1376480 TRUE FALSE FALSE 828953.23 668652.4422 569136.7636 1066766.23 527856.5798 620844.1316 688167.0532 593111.5079 625647.5715 1033348.868 0.802200743 0.647073281 0.550769233 1.032338896 0.510821269 0.600807869 0.665958104 0.57397025 0.60545629 1 19.97889597 -10.3221492 5.479141991 1.000065056 0.663233138 0.327290927 0.143840214 0.000112456 1.39E-05 0.137014116 0.033224409 4.76E-11 10.3221492 -0.336831917 AQAVS(ph)EEEEEEEGK ddPTM_HeLa_A486_30min_R1 4 AQAVSEEEEEEEGK 14 0 G3V529;Q9GZR7-2;Q9GZR7 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK ;;; 273.33 7.69E-49 2096710000 825780 872280 419033 391828 669570 882430 973110 863160 651160 1430080 TRUE FALSE FALSE 767897.0863 803157.356 581293.7997 912195.3859 585586.2871 773564.7585 729627.5855 666637.3107 707603.0731 1071978.66 0.716336169 0.749228866 0.542262474 0.850945471 0.546266739 0.721623282 0.680636297 0.621875543 0.660090634 1 20.03184476 -11.07298285 2.514657558 1.494567427 0.675901031 0.548141293 0.088090017 16827543.56 7035293.137 47605849.19 0.020199048 8.45E-12 11.07298285 -0.818666395 AQAVS(ph)EEEEEEEGKSSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 AQAVSEEEEEEEGKSSSPK 19 1 G3V529;Q9GZR7-2;Q9GZR7 G3V529 DDX24 ATP-dependent RNA helicase DDX24 2 0 AQAVS(1)EEEEEEEGKS(0.138)S(0.246)S(0.616)PK;AQAVS(1)EEEEEEEGKS(0.302)S(0.179)S(0.518)PK ; 101.74 1.31E-05 522250000 1014490 980720 402340 1684450 1011820 1608040 2597700 2190200 890350 3565900 TRUE FALSE FALSE 943379.4898 903004.1755 558136.823 3921484.727 884908.1008 1409656.374 1947727.984 1691539.272 967526.2549 2672975.43 0.352932346 0.337827339 0.208807315 1.467085961 0.331057327 0.527373487 0.728674107 0.632830086 0.361966011 1 21.35001515 -14 0.059677969 2.255857472 2.12E-13 0.128450858 0.342542082 983.0429151 4.278088073 191.6998637 32.1934235 1.00E-14 14 -2.255857472 AQAVS(ph)EEEEEEEGKSSSPK ddPTM_HeLa_A485_30min_R1 2 AQAVSEEEEEEEGKSSSPK 19 1 G3V529;Q9GZR7-2;Q9GZR7 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVS(1)EEEEEEEGKSSSPK;AQAVS(1)EEEEEEEGKSSSPK ; 208.65 3.76E-26 1253170000 275220 216233 159809 605270 493420 371730 727440 818310 270789 1038230 TRUE FALSE FALSE 336441.7395 241519.5684 218928.9993 638334.3675 444293.3723 391193.208 572016.5014 617618.1894 325133.8685 779418.3682 0.431657443 0.309871538 0.280887657 0.818988099 0.57003195 0.501904015 0.733901746 0.792409077 0.417149354 1 19.57203841 -6.797332138 0.123857361 1.233744482 1.33E-15 0.474742853 0.165133689 8.958720813 0.743435614 2.790926946 3.930826556 1.59E-07 6.797332138 -1.233744482 AQAVS(ph)EEEEEEEGKSSSPK ddPTM_HeLa_A486_30min_R1 2 AQAVSEEEEEEEGKSSSPK 19 1 G3V529;Q9GZR7-2;Q9GZR7 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVS(1)EEEEEEEGKSSSPK;AQAVS(1)EEEEEEEGKSSSPK ; 261.03 1.77E-58 993520000 404750 391950 192043 387880 497780 576120 849760 850350 346920 905170 TRUE FALSE FALSE 376379.1151 360890.4545 266407.1927 903004.2424 435343.7908 505044.172 637141.0602 656743.868 376991.3049 678509.5403 0.554714551 0.531887075 0.392635883 1.330864474 0.641617789 0.744343509 0.939030363 0.967921347 0.555616808 1 19.37200958 -5.191004731 24.99999995 0.86797073 0.496959421 0.426746417 0.206462238 157.7770112 56000.48081 0.054199162 0.093875697 6.44E-06 5.191004731 -0.371011309 AQDT(ph)ISRGSDDSVPVISFK ddPTM_HeLa_A486_30min_R1 1 AQDTISRGSDDSVPVISFK 19 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38;A0A087X1U5 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 AQDT(0.386)IS(0.386)RGS(0.228)DDSVPVISFK 89.946 0.00073669 89021000 69657 78353 53439 31947 103310 79185 89132 94765 69322 100570 TRUE FALSE FALSE 64774.40401 72144.02292 74132.01195 74374.23051 90351.89647 69415.95979 66830.23086 73189.07821 75330.88678 75386.6174 0.859229479 0.956987134 0.983357717 0.986570735 1.198513736 0.920799502 0.886499927 0.970849744 0.999260736 1 16.20202082 -4.240926974 1.942738309 0.993223689 0.814061421 0.216432709 0.077106185 1.431946332 5.488482244 0.022258981 0.469159677 5.74E-05 4.240926974 -0.179162268 AQENYEGSEEVS(ph)PPQTK ddPTM_HeLa_A486_30min_R1 2 AQENYEGSEEVSPPQTK 17 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 1 0 AQENYEGS(0.001)EEVS(0.999)PPQTK;AQENYEGSEEVS(1)PPQTK ; 193.54 4.86E-18 390890000 376900 382450 265522 137103 397260 383180 444190 445260 312170 401270 TRUE FALSE FALSE 350481.2563 352143.2691 368339.2293 319182.7128 347431.9465 335907.1475 333048.9638 343884.018 339229.1469 300789.3802 1.165204889 1.170730393 1.224575246 1.061150206 1.155067198 1.116752019 1.107249743 1.143271806 1.12779629 1 18.19839411 -14 0.129548048 0.538738205 1.199179859 0.576041315 0.038469097 108.4542645 0.886237278 13.04495993 0.300941853 1.00E-14 14 0.660441654 AQEPPAGGGGSIHDLPLFT(ph)ETSPTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_HeLa_A486_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 2 0 AQEPPAGGGGSIHDLPLFT(0.436)ET(0.122)S(0.131)PT(0.15)S(0.161)APWDPLPGPPPVLPHS(0.843)PHS(0.157)HL 89.478 1.27E-05 134740000 6663.2 4968.7 5501.6 948.19 7444.9 5214.3 5598.4 5614.2 6099.1 2971.7 TRUE FALSE FALSE 6196.144089 4574.962116 7631.966858 2207.434239 6511.091221 4571.012681 4197.621106 4335.969217 6627.774899 2227.566977 2.781574764 2.053793292 3.426144729 0.990962005 2.92296092 2.052020311 1.884397259 1.946504532 2.975342589 1 11.1212531 -10.95716543 2.750229339 0.005155493 2.30523189 0.263384287 0.668910725 13994432.28 9526508.151 87386022.36 0.157784586 1.10E-11 10.95716543 2.300076397 AQEPPAGGGGSIHDLPLFT(ph)ETSPTSAPWDPLPGPPPVLPHSPHSHL ddPTM_HeLa_A486_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 AQEPPAGGGGS(0.001)IHDLPLFT(0.415)ET(0.415)S(0.056)PT(0.056)S(0.056)APWDPLPGPPPVLPHSPHSHL 80.583 0.00042162 117690000 3285.1 5040.8 5770.3 0 6453.9 2460.7 3121.1 3740.3 6985.9 0 TRUE FALSE FALSE 3054.831454 4641.34865 8004.714694 0 5644.391682 2157.123853 2340.167768 2888.71534 7591.443437 0 0 AQEPPAGGGGSIHDLPLFTET(ph)SPTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_HeLa_A486_30min_R1 2 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 2 0 AQEPPAGGGGS(0.01)IHDLPLFT(0.113)ET(0.409)S(0.409)PT(0.029)S(0.031)APWDPLPGPPPVLPHS(0.79)PHS(0.208)HL;AQEPPAGGGGSIHDLPLFT(0.001)ET(0.445)S(0.382)PT(0.086)S(0.086)APWDPLPGPPPVLPHS(0.817)PHS(0.183)HL ; 69.477 0.0010188 165429000 17953.1 18999.8 19794.7 2556.46 25799 12727.2 13887.6 15433.3 18864.9 6471.8 TRUE FALSE FALSE 16694.6804 17494.18665 27459.73796 5951.568076 22563.04885 11157.04746 10412.77559 11919.4745 20500.12472 4851.219156 3.441337087 3.60614231 5.660378779 1.22681905 4.651005887 2.299844041 2.146424488 2.457005984 4.225767599 1 12.24413164 -5.734310293 1.019576877 2.553217828 3.989343617 0.167973435 1.305206281 1.033753644 2.292029535 0.57363948 0.915028446 1.84E-06 5.734310293 1.436125789 AQEPPAGGGGSIHDLPLFTET(ph)SPTSAPWDPLPGPPPVLPHSPHSHL ddPTM_HeLa_A485_30min_R1 2 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 AQEPPAGGGGS(0.002)IHDLPLFT(0.01)ET(0.421)S(0.377)PT(0.095)S(0.095)APWDPLPGPPPVLPHSPHSHL;AQEPPAGGGGSIHDLPLFT(0.011)ET(0.533)S(0.452)PT(0.003)SAPWDPLPGPPPVLPHSPHSHL ; 230.54 1.48E-41 453690000 6177.9 10977.6 16373.2 4730.1 21760.9 9442 10531.4 16635.2 12099 9253.6 TRUE FALSE FALSE 7552.152541 12261.33483 22430.32803 4988.493386 19594.30839 9936.36852 8281.280356 12555.39112 14527.15832 6946.84782 1.087133724 1.765021366 3.228849776 0.718094525 2.820604236 1.430342045 1.192091805 1.807350822 2.091187068 1 12.76214278 AQEPPAGGGGSIHDLPLFTETS(ph)PTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_HeLa_A485_30min_R1 3 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 2 0 AQEPPAGGGGSIHDLPLFT(0.023)ET(0.152)S(0.805)PT(0.01)S(0.011)APWDPLPGPPPVLPHS(0.972)PHS(0.028)HL;AQEPPAGGGGSIHDLPLFT(0.004)ET(0.08)S(0.9)PT(0.012)S(0.003)APWDPLPGPPPVLPHS(0.81)PHS(0.19)HL;AQEPPAGGGGS(0.043)IHDLPLFT(0.278)ET(0.309)S(0.327)PT(0.021)S(0.022)APWDPLPGPPPVLPHS(0.581)PHS(0.419)HL ;; 130.05 3.55E-09 501870000 28587 58817.4 74825 18296.2 74905.4 42867.2 49707.2 67251.1 45668.8 35396.8 TRUE FALSE FALSE 34946.07953 65695.58329 102505.8812 19295.67508 67447.55537 45111.66031 39086.85065 50757.66228 54834.10926 26573.02919 1.315095817 2.4722655 3.857515848 0.726137579 2.538195961 1.697648393 1.470921902 1.91011954 2.06352497 1 14.69767508 -5.276445036 24.99779907 1.701522202 2.5406899 0.236280568 0.749137947 1223.092934 2037537.824 0.208253198 0.31026445 5.29E-06 5.276445036 0.839167698 AQEPPAGGGGSIHDLPLFTETS(ph)PTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_HeLa_A486_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 2 0 AQEPPAGGGGSIHDLPLFT(0.047)ET(0.063)S(0.747)PT(0.069)S(0.074)APWDPLPGPPPVLPHS(0.832)PHS(0.168)HL 86.893 1.03E-05 138750000 13483 19111 22713 3588.7 19026 7746.1 13471 13884 14179 7318.9 TRUE FALSE FALSE 12537.91133 17596.57476 31508.08188 8354.674963 16639.58167 6790.464939 10100.41332 10722.91629 15408.04714 5486.199802 2.285354486 3.207425065 5.743152458 1.522852842 3.032988639 1.237735625 1.841058234 1.954525295 2.808510024 1 12.42159145 -5.319551744 24.99994027 1.969137763 3.691542951 0.413503301 0.997353506 261.859434 112651.3221 0.278417524 0.412960068 4.79E-06 5.319551744 1.722405187 AQEPPAGGGGSIHDLPLFTETS(ph)PTSAPWDPLPGPPPVLPHSPHSHL ddPTM_HeLa_A486_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 AQEPPAGGGGSIHDLPLFT(0.006)ET(0.178)S(0.645)PT(0.142)S(0.029)APWDPLPGPPPVLPHSPHSHL 106.97 1.12E-07 157290000 77058 69110 73243 25543 101270 53623 78903 85469 70921 52889 TRUE FALSE FALSE 71656.63213 63633.47191 101604.6511 59465.39487 88567.77229 47007.53946 59160.63485 66009.57448 77068.48938 39645.25015 1.807445579 1.605071772 2.562845504 1.499937436 2.23400715 1.185704196 1.49225026 1.665005876 1.943952657 1 15.27486041 -6.26027173 24.99987343 1.5011247 1.933098717 0.296025749 0.370377455 155.8005067 3335776.415 0.122527863 0.116068252 5.49E-07 6.26027173 0.431974017 AQEPPAGGGGSIHDLPLFTETSPTS(ph)APWDPLPGPPPVLPHSPHSHL ddPTM_HeLa_A486_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 AQEPPAGGGGSIHDLPLFT(0.001)ET(0.01)S(0.033)PT(0.454)S(0.498)APWDPLPGPPPVLPHS(0.003)PHS(0.001)HL 71.969 0.00019158 146120000 16680 17379 19221 1720 24300 13243 12234 14723 13586 5313.9 TRUE FALSE FALSE 15510.81814 16001.82475 26663.88596 4004.246924 21252.06741 11609.2133 9172.923802 11370.8943 14763.64542 3983.264852 3.893996184 4.017263561 6.693977665 1.005267556 5.335338773 2.914496961 2.30286565 2.854666893 3.706418219 1 11.95973569 -7.705712356 0.164515052 1.45E-11 5.576577389 0.285950422 1.42751723 5.774284735 0.895476569 13.68542428 11.4693488 1.97E-08 7.705712356 5.576577389 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_HeLa_A485_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHS(0.98)PHS(0.02)HL 242.47 2.83E-53 163420000 12132 22102 30054 7006 25863 14904 21208 24951 22265 11098 TRUE FALSE FALSE 14830.72155 24686.63664 41172.22525 7388.72004 23287.98891 15684.35039 16676.73755 18831.72813 26733.38127 8331.472844 1.780084005 2.963057925 4.941770324 0.886844401 2.795182718 1.882542341 2.001655393 2.26031201 3.208722128 1 13.02435584 -5.279840398 24.99805246 2.08522801 3.201779907 0.244494656 0.977988487 1220.907157 1658617.239 0.271761773 0.403927228 5.25E-06 5.279840398 1.116551896 AQES(ph)HESMESYELNPFINRR ddPTM_HeLa_A485_30min_R1 1 AQESHESMESYELNPFINRR 20 1 P08493-2 P08493-2 1 0 AQES(0.911)HES(0.043)MES(0.043)Y(0.002)ELNPFINRR 43.162 0.03776 1142200000 92059 136050 135270 95977 136800 118490 110590 108250 118940 120840 TRUE FALSE FALSE 112537.207 151959.864 185312.0021 101219.9805 123179.7117 124693.9532 86961.54306 81701.51777 142810.167 90716.8119 1.24053309 1.67510146 2.042752586 1.115779737 1.357848772 1.374540734 0.958604488 0.900621572 1.574241467 1 16.46908232 -5.290432013 24.71320478 1.184855197 1.655026388 0.394521228 0.266643863 607.2599057 517624.5799 0.076242811 0.113109234 5.12E-06 5.290432013 0.47017119 AQESGQGSTAGPLRPPPPGAGGPAT(ph)PSK ddPTM_HeLa_A485_30min_R1 1 AQESGQGSTAGPLRPPPPGAGGPATPSK 28 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 AQESGQGSTAGPLRPPPPGAGGPAT(0.971)PS(0.029)K 138.21 1.72E-06 240860000 41237 36807 26234 36245 48401 46418 58684 49247 33574 57135 TRUE FALSE FALSE 50410.02838 41111.25847 35939.04829 38224.97257 43582.02649 48848.3747 46145.684 37169.09603 40311.99384 42892.29599 1.175269992 0.958476517 0.837890522 0.891185041 1.016080522 1.13886127 1.075850171 0.866568114 0.939842294 1 15.38843092 AQESGQGSTAGPLRPPPPGAGGPAT(ph)PSK ddPTM_HeLa_A486_30min_R1 1 AQESGQGSTAGPLRPPPPGAGGPATPSK 28 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 AQESGQGSTAGPLRPPPPGAGGPAT(0.998)PS(0.002)K 141.44 6.84E-09 347710000 57607 57705 33254 22925 59622 57191 75553 63840 40909 69467 TRUE FALSE FALSE 53569.04678 53132.24564 46130.83937 53370.55857 52143.65281 50135.3559 56648.84028 49305.02562 44455.02506 52072.01105 1.028749336 1.02036093 0.885904701 1.024937533 1.001375821 0.962808136 1.087894228 0.946862328 0.85372207 1 15.6682205 -7.512625588 24.88701808 0.918004748 0.998794135 0.219567971 0.059064296 634.0348277 1538984.24 0.034667673 0.014836768 3.07E-08 7.512625588 0.080789388 AQFEGIVTDLIR ddPTM_HeLa_A485_30min_R1 1 AQFEGIVTDLIR 12 0 P38646;H0YBG6 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 114.82 0.0034886 10618000 10880 12647 11030 12854 14782 11925 16215 15594 10750 18442 FALSE FALSE TRUE 13300.21846 14125.95664 15110.456 13556.18147 13310.25218 12549.37456 12750.53279 11769.54705 12907.4264 13844.7488 0.960668818 1.020311516 1.091421463 0.979156911 0.961393549 0.906435699 0.920965268 0.850109108 0.932297623 1 13.75705126 -5.841258128 2.0712313 0.913120406 1.023430143 0.459125181 0.046550005 0.254116913 2.237064315 0.016084268 0.019663149 1.44E-06 5.841258128 0.110309738 AQFSVAGVHTVPGS(ph)PQAR ddPTM_HeLa_A485_30min_R1 1 AQFSVAGVHTVPGSPQAR 18 0 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 AQFSVAGVHT(0.007)VPGS(0.993)PQAR 111.25 7.35E-05 305220000 143830 190990 185310 116220 214020 166770 211970 243520 192270 203790 TRUE FALSE FALSE 175824.4873 213324.6191 253863.8804 122568.8043 192711.4173 175501.8193 166680.8779 183796.3382 230856.8254 152988.9035 1.149263007 1.394379685 1.659361396 0.801161401 1.259643105 1.147153913 1.08949652 1.201370387 1.50897758 1 17.22306749 -5.247264429 24.99676177 1.155044674 1.400339146 0.246192805 0.205463823 1225.774213 2161583.102 0.055417293 0.095420226 5.66E-06 5.247264429 0.245294472 AQFSVAGVHTVPGS(ph)PQAR ddPTM_HeLa_A486_30min_R1 2 AQFSVAGVHTVPGSPQAR 18 0 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 AQFSVAGVHT(0.037)VPGS(0.963)PQAR;AQFSVAGVHTVPGS(1)PQAR ; 103.92 0.00012598 644500000 378700 469560 400460 237216 559080 451960 500920 506960 410860 546200 TRUE FALSE FALSE 352155.0856 432350.3555 555528.8367 552250.8362 488954.9732 396201.7704 375584.5178 391536.2749 446473.6756 409427.9648 0.860114882 1.055986383 1.356841458 1.348835164 1.194239317 0.967695918 0.917339679 0.956300762 1.090481633 1 18.64325012 -6.262211654 24.28109078 0.979318393 1.178317484 0.28283772 0.139538397 63.76118659 2004686.557 0.052659083 0.049182339 5.47E-07 6.262211654 0.198999091 AQGEPVAGHES(ph)PK ddPTM_HeLa_A485_30min_R1 4 AQGEPVAGHESPK 13 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 0 AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK ;;; 194.19 7.66E-18 5033480000 6814950 6266007 3610289 10073900 5233114 5232663 7789680 6474540 4290582 11313890 TRUE FALSE FALSE 8330912.116 6998762.012 4945885.138 10624211.65 4712086.796 5506637.143 6125351.232 4886648.913 5151662.452 8493545.44 0.980852128 0.824009486 0.582311023 1.250857104 0.554784434 0.648331981 0.72117719 0.57533676 0.606538517 1 23.01793547 AQGEPVAGHES(ph)PK ddPTM_HeLa_A486_30min_R1 5 AQGEPVAGHESPK 13 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 0 AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK;AQGEPVAGHES(1)PK ;;;; 212.02 4.35E-22 7175660000 2200190 2047050 847866 1024872 1201065 1949590 2420640 1916610 1408930 3632720 TRUE FALSE FALSE 2045968.043 1884834.303 1176182.422 2385953.81 1050416.228 1709069.408 1814970.269 1480239.742 1531057.187 2723063.267 0.751347964 0.69217426 0.431933564 0.876202121 0.385748007 0.627627506 0.666517848 0.543593592 0.562255459 1 21.37679907 -10.67344471 3.671309834 1.024491842 0.612823467 0.412586105 0.137691854 186011622 708982.8107 38499321.04 0.031492064 2.12E-11 10.67344471 -0.411668376 AQGEPVAGHES(ph)PKIPYEK ddPTM_HeLa_A485_30min_R1 8 AQGEPVAGHESPKIPYEK 18 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 0 AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK ;;;;;;; 256.12 6.33E-58 82679850000 12564855 10045877 7199023 21745860 17286810 14415360 25095970 24961320 11312553 27785070 TRUE FALSE FALSE 15359863.65 11220654.93 9862241.184 22933781.27 15565674.5 15170125.96 19734010.99 18839517.13 13582878.62 20858763.4 0.736374605 0.53793481 0.472810444 1.099479429 0.746241482 0.727278299 0.946077705 0.903194345 0.651183312 1 24.31415029 -5.242454555 24.99528321 0.855964829 0.577929432 0.460913896 0.140955973 754.2224579 993002.4907 0.037617624 0.065024755 5.72E-06 5.242454555 -0.278035398 AQGEPVAGHES(ph)PKIPYEK ddPTM_HeLa_A486_30min_R1 7 AQGEPVAGHESPKIPYEK 18 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 0 AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK;AQGEPVAGHES(1)PKIPYEK ;;;;;; 237.19 1.91E-45 87003400000 13711130 12943750 6344560 9243030 13849940 16440290 23109200 21786240 9931470 22290870 TRUE FALSE FALSE 12750050.59 11918040.11 8801343.545 21518240.96 12112751.38 14412054.17 17327033.74 16825988.74 10792337.82 16709091.06 0.763060692 0.713266812 0.526739816 1.287816368 0.724919826 0.862527717 1.036982423 1.006996053 0.645896164 1 23.99412992 -5.221073138 24.99988536 0.930285428 0.672246905 0.331145903 0.175699452 626.7514179 388163.0372 0.046277515 0.080153629 6.01E-06 5.221073138 -0.258038524 AQGGQT(ph)QSPTKSHTPSPTSPK ddPTM_HeLa_A485_30min_R1 2 AQGGQTQSPTKSHTPSPTSPK 21 1 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 AQGGQT(0.574)QS(0.385)PT(0.019)KS(0.019)HT(0.003)PSPTSPK;AQGGQT(0.589)QS(0.395)PT(0.016)KSHTPSPTSPK ; 117.36 4.31E-05 349210000 118918 192588 105305 103146 264350 295160 411590 694440 137955 161005 TRUE FALSE FALSE 145370.8988 215109.4913 144261.7016 108780.6048 238030.3858 310614.1212 323650.4341 524127.5012 165641.3031 120869.4166 1.202710354 1.77968503 1.193533531 0.899984528 1.969318563 2.569832221 2.677686741 4.336311997 1.370415344 1 16.88308972 -6.041375823 3.288502612 2.612857399 1.302391866 0.249785555 0.86978664 0.294333201 6.442493795 0.287571381 0.303272531 9.09E-07 6.041375823 -1.310465533 AQGGQTQS(ph)PTK ddPTM_HeLa_A485_30min_R1 1 AQGGQTQSPTK 11 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 AQGGQT(0.013)QS(0.986)PT(0.001)K 147.26 3.09E-06 0 218450 118900 60086 544850 86317 290890 121300 146980 153650 325950 TRUE FALSE FALSE 267043.4489 132804.3207 82314.31179 574613.7759 77722.9764 306120.5506 95383.26407 110932.9245 184486.1456 244696.6637 1.091324438 0.54273041 0.336393274 2.348269761 0.317629898 1.251020533 0.389802062 0.453348742 0.753938133 1 17.90063491 -6.768593433 24.99855959 0.603718 0.963960382 0.072548357 0.570257197 462.8378207 1617285.736 0.232404616 0.160371894 1.70E-07 6.768593433 0.360242381 AQGPLAMLQHFDTIYSILHHFR ddPTM_HeLa_A485_30min_R1 5 AQGPLAMLQHFDTIYSILHHFR 22 0 Q15021;F5GZK7 Q15021 NCAPD2 Condensin complex subunit 1 0 0 ;;;; ;;;; 254.55 5.73E-53 201734800 81286.4 111093.7 115758.7 57901.3 99611.8 76542.2 111975 114357.1 59104.4 105766 FALSE FALSE TRUE 99368.27925 124085.1418 158582.6603 61064.30141 89694.09943 80549.83124 88050.6265 86310.84192 70966.11094 79400.48268 1.251482055 1.562775661 1.997250582 0.769067131 1.12964174 1.014475335 1.108943215 1.087031703 0.893774301 1 16.27686016 -5.270678551 24.99999476 1.014537177 1.599730067 0.665772242 0.195737746 384.9344712 1041582.059 0.055029991 0.082907998 5.36E-06 5.270678551 0.58519289 AQGPLAMLQHFDTIYSILHHFR ddPTM_HeLa_A486_30min_R1 5 AQGPLAMLQHFDTIYSILHHFR 22 0 Q15021;F5GZK7 Q15021 NCAPD2 Condensin complex subunit 1 0 0 ;;;; ;;;; 283.88 2.85E-65 151915900 80986.7 97953.5 79781.4 24262.18 108054.8 75581.4 92855.8 92905.6 73869.1 83368.2 FALSE FALSE TRUE 75309.95055 90191.30792 110674.8947 56483.58118 94501.55941 66256.93532 69622.29671 71753.02299 80272.13306 62492.26008 1.205108448 1.443239656 1.771017636 0.90384923 1.512212221 1.060242264 1.114094715 1.148190558 1.284513201 1 15.9313899 -5.266222868 24.9986922 1.162668607 1.470133682 0.354634341 0.201253199 454.7451919 2376517.748 0.054840389 0.084393062 5.42E-06 5.266222868 0.307465075 AQGPRPHQENNHQESYPLS(ph)VSPMENNHCPAS(ph)SESHPKPSSPR ddPTM_HeLa_A485_30min_R1 1 AQGPRPHQENNHQESYPLSVSPMENNHCPASSESHPKPSSPR 42 2 P41212 P41212 ETV6 Transcription factor ETV6 2 0 AQGPRPHQENNHQES(0.005)Y(0.011)PLS(0.436)VS(0.436)PMENNHCPAS(0.238)S(0.238)ES(0.238)HPKPS(0.199)S(0.199)PR 57.192 0.0037657 1555600000 15894 22940 15783 15330 24870 27968 25268 31554 20794 24479 TRUE FALSE FALSE 19429.56547 25622.63345 21621.78849 16167.43908 22393.85548 29432.36123 19869.28538 23815.33203 24967.16507 18376.8358 1.057285687 1.394289731 1.176578423 0.879772734 1.218591477 1.601601143 1.081213632 1.295943017 1.358621546 1 14.16560076 -5.997554746 24.99560419 1.289415968 1.137063269 0.100304107 0.192273554 174.0749374 1779370.056 0.059812908 0.067406475 1.01E-06 5.997554746 -0.152352699 AQGPRPHQENNHQESYPLS(ph)VSPMENNHCPASSES(ph)HPKPSSPR ddPTM_HeLa_A485_30min_R1 1 AQGPRPHQENNHQESYPLSVSPMENNHCPASSESHPKPSSPR 42 2 P41212 P41212 ETV6 Transcription factor ETV6 2 0 AQGPRPHQENNHQESYPLS(0.839)VS(0.154)PMENNHCPAS(0.005)S(0.006)ES(0.63)HPKPS(0.193)S(0.173)PR 165.84 3.58E-16 1139800000 105190 144680 131550 62884 181890 135070 162740 191260 110980 134770 TRUE FALSE FALSE 128589.1526 161599.0675 180215.8193 66319.19369 163780.3929 142142.0563 127969.2695 144353.1851 133252.668 101174.3193 1.270966324 1.597234047 1.781240739 0.655494341 1.618794118 1.40492229 1.264839442 1.426776935 1.317060189 1 16.62648362 -12.73311142 0.221256735 5.74E-08 1.428017692 0.13459647 0.285977714 174.8330695 2.90014499 79.68586912 0.556536513 1.85E-13 12.73311142 1.428017634 AQGPRPHQENNHQESYPLSVS(ph)PMENNHCPASSESHPKPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 AQGPRPHQENNHQESYPLSVSPMENNHCPASSESHPKPSSPR 42 2 P41212 P41212 ETV6 Transcription factor ETV6 2 0 AQGPRPHQENNHQESYPLS(0.394)VS(0.604)PMENNHCPAS(0.002)S(0.002)ES(0.016)HPKPS(0.517)S(0.465)PR 121.35 8.80E-08 326400000 17934 25014 16575 16003 25702 22080 29659 31164 20807 26277 TRUE FALSE FALSE 21923.35643 27939.16971 22706.78224 16877.20337 23143.01863 23236.07466 23322.11236 23520.98014 24982.77405 19726.62749 1.111358565 1.4163176 1.151072694 0.855554421 1.173186782 1.177904062 1.182265563 1.192346748 1.266449324 1 14.26785671 -4.97278838 24.66954455 1.125978853 1.268802514 0.157983656 0.129529534 329.5489466 298758.4792 0.034400173 0.071606906 1.06E-05 4.97278838 0.142823661 AQGPRPHQENNHQESYPLSVS(ph)PMENNHCPASSESHPKPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 AQGPRPHQENNHQESYPLSVSPMENNHCPASSESHPKPSSPR 42 2 P41212 P41212 ETV6 Transcription factor ETV6 2 0 AQGPRPHQENNHQESYPLS(0.117)VS(0.882)PMENNHCPASSES(0.004)HPKPS(0.532)S(0.465)PR 174.53 1.11E-16 878000000 252780 236700 203040 22004 338070 240550 301960 268040 272530 159530 TRUE FALSE FALSE 235061.4274 217943.03 281662.5256 51226.42402 295666.1082 210873.3867 226406.4142 207013.1433 296153.1198 119582.6496 1.965681711 1.822530531 2.355379534 0.428376727 2.472483334 1.763411225 1.893304881 1.731130259 2.476555928 1 16.86764856 AQGS(ph)DEDKLQNS(ph)DDDEKMQNT(ph)DDEERPQLS(ph)DDER ddPTM_HeLa_A486_30min_R1 1 AQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDER 34 3 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 4 0 AQGS(1)DEDKLQNS(1)DDDEKMQNT(1)DDEERPQLS(1)DDER 144.23 8.21E-10 487970000 130280 103180 43514 136110 68876 165790 224300 172840 83868 434300 TRUE FALSE FALSE 121148.0448 95003.64102 60363.78615 316870.9586 60236.92984 145336.5154 168177.7676 133488.1051 91137.74577 325548.4532 0.372135219 0.291826424 0.185421818 0.973344998 0.185032149 0.446435896 0.51659827 0.410040668 0.279951402 1 18.31251276 -9.999305833 4.154469396 1.000038543 0.411501788 0.405795465 0.215293675 259949626.8 531497524.1 152013.843 0.051311059 1.00E-10 9.999305833 -0.588536755 AQGVRS(ph)PLLR ddPTM_HeLa_A485_30min_R1 6 AQGVRSPLLR 10 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR ;;;;; 151.16 1.68E-06 13486920000 2689244 4487810 4427070 2760985 5678900 4639480 5641210 7332940 4156680 4250360 TRUE FALSE FALSE 3287457.05 5012620.341 6064827.419 2911810.619 5113488.776 4882395.999 4435919.399 5534524.967 4990887.549 3190823.474 1.030284839 1.57094881 1.900709164 0.912557728 1.602560849 1.530136668 1.390211472 1.734513054 1.564137781 1 21.60549737 AQGVRS(ph)PLLR ddPTM_HeLa_A486_30min_R1 6 AQGVRSPLLR 10 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR;AQGVRS(1)PLLR ;;;;; 128.21 4.59E-05 12722820000 3684950 3880660 4152690 1404390 6142050 3569020 4506860 4887630 3232160 4003070 TRUE FALSE FALSE 3426654.034 3573142.368 5760722.781 3269490.894 5371656.817 3128710.6 3379195.959 3774823.345 3512326.231 3000675.216 1.141960988 1.190779445 1.919808832 1.089585063 1.790149359 1.042668857 1.126145189 1.25799131 1.170511961 1 21.51685574 -6.32904159 24.9999199 1.136005356 1.422064167 0.25922571 0.258671153 276.3623244 102200.1215 0.088715914 0.078240088 4.69E-07 6.32904159 0.286058811 AQHEDQVEQYK(ac)K ddPTM_HeLa_A485_30min_R1 1 AQHEDQVEQYKK 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 AQHEDQVEQYK(1)K 93.206 0.034314 26600000 7846.7 7471 14782 10427 10623 8991.9 18128 15389 9661.2 24184 FALSE TRUE FALSE 9592.171344 8344.668461 20250.47693 10996.60061 9565.33682 9462.70198 14254.80471 11614.82362 11600.11422 18155.37387 0.528337858 0.459625261 1.115398508 0.605693977 0.526859809 0.521206671 0.785156219 0.639745769 0.638935574 1 14.14810902 -10.538928 2.337785172 1.029207078 0.650487176 0.259619711 0.178851742 2999228.749 2501832.185 549193.7255 0.047796919 2.89E-11 10.538928 -0.378719902 AQHEDQVEQYK(ac)K ddPTM_HeLa_A486_30min_R1 2 AQHEDQVEQYKK 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; AQHEDQVEQYK(1)K;AQHEDQVEQYK(1)K 149.69 0.00044365 42199000 21517 28059 39693 10795.2 28420 31635 45970 39504 24332 64943 FALSE TRUE FALSE 20008.76941 25835.50265 55063.19262 25131.77116 24855.29859 27732.19534 34467.81978 30509.80157 26441.11735 48680.85009 0.41101931 0.530711822 1.131105815 0.516255799 0.510576511 0.569673604 0.708036522 0.626731076 0.543152334 1 15.57106674 -10.8488127 2.390173498 1.163329094 0.624555275 0.272324907 0.187704526 18248912.15 10476638.44 17002469.46 0.049007837 1.42E-11 10.8488127 -0.538773819 AQHEDQVEQYKK ddPTM_HeLa_A485_30min_R1 2 AQHEDQVEQYKK 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 220.69 2.81E-21 301784000 566082 547608 358288 663277 680822 720114 930060 993890 557657 936640 FALSE FALSE TRUE 692004.9879 611645.992 490833.6408 699510.143 613036.9712 757818.0555 731345.0831 750136.9191 669573.6448 703152.8856 0.984145841 0.869862024 0.698046827 0.994819416 0.871840227 1.077742936 1.04009398 1.066819087 0.952244751 1 19.42347888 -6.252402838 24.56578559 1.032350958 0.878826172 0.429709772 0.08254031 490.2260691 1332677.204 0.027795194 0.02739675 5.59E-07 6.252402838 -0.153524787 AQHEDQVEQYKK ddPTM_HeLa_A486_30min_R1 2 AQHEDQVEQYKK 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 171.73 1.63E-10 509920000 910260 815110 521686 445696 1083590 927210 1109650 1119910 693850 1136020 FALSE FALSE TRUE 846455.4746 750517.715 723696.7904 1037602.812 947676.0381 812820.2574 832003.8333 864930.9405 753993.4767 851553.1978 0.994013617 0.881351532 0.849855056 1.218482668 1.112879431 0.954514949 0.977042697 1.015709814 0.885433204 1 19.69973713 AQHIVPCTISQLLSATLVDEVFR ddPTM_HeLa_A485_30min_R1 1 AQHIVPCTISQLLSATLVDEVFR 23 0 P15927;P15927-2;P15927-3;Q5TEJ7 P15927 RPA2 Replication protein A 32 kDa subunit 0 0 152.95 1.85E-13 2149500 1551.3 1176.4 1360.9 1443.1 1881.3 1936.7 2531.3 2222.6 1448.4 1916.5 FALSE FALSE TRUE 1896.381333 1313.969747 1864.353542 1521.932899 1693.991166 2038.102617 1990.467076 1677.503865 1739.080594 1438.751821 1.318073976 0.913270606 1.295813159 1.057814751 1.177403317 1.416576916 1.383467981 1.16594387 1.208742585 1 10.49060204 -6.01258878 24.76580785 1.259310343 1.137451197 0.058606212 0.152632285 1143.425912 2249455.788 0.047411121 0.049793526 9.71E-07 6.01258878 -0.121859146 AQHIVPCTISQLLSATLVDEVFR ddPTM_HeLa_A486_30min_R1 1 AQHIVPCTISQLLSATLVDEVFR 23 0 P15927;P15927-2;P15927-3;Q5TEJ7 P15927 RPA2 Replication protein A 32 kDa subunit 0 0 167.57 6.71E-18 2465800 1427.7 1647.3 1306.3 582.31 2090.8 2366.4 2669.5 1945.2 1590.4 1890.8 FALSE FALSE TRUE 1327.625603 1516.761949 1812.134344 1355.647108 1828.552368 2074.457628 2001.562865 1502.320423 1728.257153 1417.331373 0.936707977 1.070153372 1.278553751 0.956478587 1.29013751 1.463636287 1.412205292 1.059964135 1.21937409 1 10.46896139 -3.829919626 0.810661679 1.238048295 0.517921849 0.219439314 0.159155861 6.904552958 2.162455765 0.061045297 5.248047729 0.000147938 3.829919626 -0.720126447 AQHPDYS(ph)FGELSR ddPTM_HeLa_A486_30min_R1 1 AQHPDYSFGELSR 13 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-3 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AQHPDYS(1)FGELSR 95.094 0.00088311 75025000 108300 148720 128130 41299 160310 135530 143740 146920 116460 123800 TRUE FALSE FALSE 100708.7293 136934.8856 177745.3674 96146.15914 140202.425 118809.6866 107774.7317 113469.5232 126554.8466 92799.6742 1.085227186 1.47559662 1.915366287 1.036061387 1.510807297 1.28028129 1.16136972 1.222736224 1.363742359 1 16.50183212 -6.330653697 1.160466937 1.195491981 1.437019352 0.139180925 0.243558269 0.993625676 2.756365435 0.131238325 0.111029813 4.67E-07 6.330653697 0.241527371 AQHPQPAGQQGHGAS(ph)PHTGLPAGSLR ddPTM_HeLa_A485_30min_R1 3 AQHPQPAGQQGHGASPHTGLPAGSLR 26 0 H7C0J3;I3L229 H7C0J3 CHD3 1 0 AQHPQPAGQQGHGAS(0.994)PHT(0.006)GLPAGSLR;AQHPQPAGQQGHGAS(1)PHTGLPAGSLR;AQHPQPAGQQGHGAS(0.995)PHT(0.005)GLPAGSLR ;; 201.39 1.94E-28 2616140000 368730 515740 491020 341407 651010 458612 543970 719690 447710 505950 TRUE FALSE FALSE 450752.7164 576051.3067 672668.731 360057.1999 586193.1586 482624.2152 427746.3657 543184.8991 537561.2904 379825.9763 1.186734833 1.516619038 1.770991909 0.947953069 1.54332035 1.270645625 1.126164065 1.430088864 1.415283114 1 18.53497905 -5.253608563 24.99426051 1.273774339 1.493965597 0.196225277 0.221736796 1082.997075 3456683.039 0.059232284 0.100157907 5.58E-06 5.253608563 0.220191258 AQHPQPAGQQGHGAS(ph)PHTGLPAGSLR ddPTM_HeLa_A486_30min_R1 2 AQHPQPAGQQGHGASPHTGLPAGSLR 26 0 H7C0J3;I3L229 H7C0J3 CHD3 1 0 AQHPQPAGQQGHGAS(1)PHTGLPAGSLR;AQHPQPAGQQGHGAS(0.997)PHT(0.003)GLPAGSLR ; 149.49 2.94E-09 1806840000 495700 562070 476560 115557 604870 440990 515800 545950 434780 477620 TRUE FALSE FALSE 460953.9898 517529.5262 661096.7947 269022.5359 529001.5644 386585.1375 386741.3844 421649.103 472467.0805 358020.8432 1.287506017 1.445529041 1.846531584 0.751415849 1.477571975 1.079783886 1.080220305 1.177722222 1.319663616 1 18.44968406 -5.255310068 24.99995188 1.144767998 1.518422866 0.403481741 0.221990442 522.1839917 2129854.178 0.058627777 0.098343706 5.56E-06 5.255310068 0.373654868 AQHQQALSSLELLNVLFR ddPTM_HeLa_A485_30min_R1 2 AQHQQALSSLELLNVLFR 18 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 ; ; 229.61 3.52E-30 22882200 10296.9 13526.4 14783.7 9299.1 17662.9 11561.2 13271.4 14973.8 11445.2 14364.9 FALSE FALSE TRUE 12587.40988 15108.19482 20252.80583 9807.086286 15904.31966 12166.52655 10435.85697 11301.45207 13742.14666 10783.9948 1.167230708 1.400983133 1.87804299 0.909411259 1.474807802 1.128202191 0.967717174 1.047983821 1.274309467 1 13.39660409 -5.99371609 1.183773952 1.075525892 1.421566366 0.235902168 0.244556889 0.675271256 1.98962199 0.111143594 0.128492623 1.01E-06 5.99371609 0.346040474 AQHQQALSSLELLNVLFR ddPTM_HeLa_A486_30min_R1 1 AQHQQALSSLELLNVLFR 18 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 177.56 8.47E-18 7161500 4997.3 5505.9 5922.6 1664.8 6619.7 4370.9 5111.6 4744.5 3901.9 4681.3 FALSE FALSE TRUE 4647.015076 5069.592432 8215.989333 3875.738534 5789.3955 3831.662798 3832.623615 3664.280922 4240.119834 3509.07201 1.32428604 1.444710287 2.34135672 1.104491023 1.649836619 1.091930512 1.092204322 1.044230757 1.208330813 1 11.77687384 -6.173330099 1.554290434 1.07352288 1.621516396 0.368699378 0.308522109 0.426134798 2.059143575 0.131059842 0.127292432 6.71E-07 6.173330099 0.547993515 AQHTLPQDPAIVQSSLGS(ph)ASASPFQPHVPYS(ph)PFR ddPTM_HeLa_A486_30min_R1 1 AQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFR 34 0 Q5TBQ1;Q9BX40-2;Q9BX40;A0A0C4DFV2 Q5TBQ1 LSM14B Protein LSM14 homolog B 2 0 AQHTLPQDPAIVQS(0.007)S(0.026)LGS(0.552)AS(0.222)AS(0.237)PFQPHVPY(0.242)S(0.714)PFR 76.659 0.0003266 110000000 11720 11014 8125 3587.9 13763 11384 15840 15067 9421.9 11755 TRUE FALSE FALSE 10898.48852 10141.21053 11271.2176 8352.812522 12036.71621 9979.557824 11876.66446 11636.57301 10238.59788 8811.471488 1.236852271 1.150909986 1.279152706 0.947947518 1.366027935 1.132564276 1.347863916 1.320616315 1.161962323 1 13.10516725 -3.966968448 14.73355485 1.203031207 1.340338848 0.002167382 0.135212209 7781930.986 104559955.9 0.032025332 26512552.65 0.000107903 3.966968448 0.137307641 AQHTLPQDPAIVQSSLGSASAS(ph)PFQPHVPYS(ph)PFR ddPTM_HeLa_A486_30min_R1 1 AQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFR 34 0 Q5TBQ1;Q9BX40-2;Q9BX40;A0A0C4DFV2 Q5TBQ1 LSM14B Protein LSM14 homolog B 2 0 AQHTLPQDPAIVQSSLGS(0.005)AS(0.006)AS(0.989)PFQPHVPY(0.114)S(0.886)PFR 236.63 5.08E-51 100790000 32226 39125 33217 10890 45271 42740 45773 36802 32627 31781 TRUE FALSE FALSE 29967.12382 36024.59251 46079.51198 25352.47035 39592.68904 37467.17335 34320.11126 28422.98798 35455.13463 23822.83074 1.257916162 1.512187737 1.934258463 1.064208978 1.661964083 1.572742289 1.440639512 1.193098683 1.488283866 1 14.54005723 -8.575961333 0.509571817 0.975636107 1.512944031 0.267986687 0.232759686 2.843534981 1.27518917 0.403269482 0.118152987 2.65E-09 8.575961333 0.537307924 AQIHDLVLVGGSTR ddPTM_HeLa_A485_30min_R1 3 AQIHDLVLVGGSTR 14 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ;; ;; 160.81 1.76E-07 282351000 160783 190616 199744 155708 215165 197653 220201 242857 191712 232636 FALSE FALSE TRUE 196548.6237 212906.8831 273637.6176 164213.9338 193742.4171 208001.8055 173153.2575 183295.94 230186.8399 174644.1265 1.125423612 1.219089856 1.566829776 0.940277449 1.10935547 1.191003726 0.991463388 1.049539676 1.318033675 1 17.4140586 -5.285242577 24.99950887 1.089182613 1.295312073 0.318839827 0.145872562 949.0690067 996765.2708 0.041004465 0.060852437 5.19E-06 5.285242577 0.20612946 AQIHDLVLVGGSTR ddPTM_HeLa_A486_30min_R1 2 AQIHDLVLVGGSTR 14 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 106.36 0.00082229 54282000 22322 33413 32388 13392.7 40368 29204 33939 35265 28891 38540 FALSE FALSE TRUE 20757.34307 30765.23219 44929.50098 31178.88243 35304.66902 25601.1074 25447.10323 27235.92933 31395.29514 28889.33315 0.718512365 1.064933968 1.55522804 1.07925241 1.222065904 0.886178552 0.88084772 0.942767671 1.086743504 1 14.81824928 -6.26356758 24.9640881 0.950826732 1.145521805 0.148527729 0.199242085 352.8427056 4138869.457 0.071632787 0.066271471 5.45E-07 6.26356758 0.194695073 AQIS(ph)SPNLR ddPTM_HeLa_A485_30min_R1 4 AQISSPNLR 9 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 AQIS(0.781)S(0.219)PNLR;AQIS(0.5)S(0.5)PNLR;AQIS(0.614)S(0.386)PNLR;AQIS(0.5)S(0.5)PNLR ;;; 179.57 3.86E-08 1301570000 1582940 2169730 2128270 1575120 2339340 2041250 2202730 2471440 1875850 2323880 TRUE FALSE FALSE 1935059.542 2423461.049 2915605.638 1661164.817 2106427.096 2148126.694 1732098.741 1865315.465 2252315.889 1744579.484 1.109183938 1.389137653 1.671236917 0.952186376 1.207412511 1.231314889 0.992845988 1.069206352 1.291036556 1 20.7344479 -5.277593695 24.99887494 1.113866163 1.389781355 0.386291891 0.163595034 841.1296603 1301649.927 0.046297377 0.06890942 5.28E-06 5.277593695 0.275915193 AQIS(ph)SPNLR ddPTM_HeLa_A486_30min_R1 2 AQISSPNLR 9 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 AQIS(0.779)S(0.221)PNLR;AQIS(0.672)S(0.328)PNLR ; 161.67 1.29E-05 1054540000 1213700 1448700 1325020 418271 1626240 1215410 1264130 1455670 1256070 1272400 TRUE FALSE FALSE 1128625.898 1333899.736 1838103.229 973756.0262 1422261.815 1065465.072 947831.3034 1124245.718 1364947.159 953782.7581 1.183315475 1.398536223 1.927171794 1.020941108 1.491180044 1.117094079 0.993760157 1.178723046 1.431088104 1 19.86330118 -5.849736853 1.496244058 1.157245243 1.455909992 0.189346367 0.250416881 0.65765094 3.058746721 0.096874522 0.122869806 1.41E-06 5.849736853 0.298664749 AQISS(ph)PNLR ddPTM_HeLa_A485_30min_R1 2 AQISSPNLR 9 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 AQIS(0.267)S(0.733)PNLR;AQIS(0.29)S(0.71)PNLR ; 173.07 4.14E-06 884270000 628990 792130 767220 687430 873410 800110 881100 941750 721500 971920 TRUE FALSE FALSE 768906.6555 884762.7129 1051046.605 724982.5602 786450.2337 842002.5224 692845.7871 710784.3359 866298.432 729638.2309 1.053819034 1.212604652 1.440503746 0.993619207 1.077863248 1.154000005 0.949574402 0.974159941 1.187298575 1 19.4768218 -5.302038913 24.99999817 1.048547638 1.233339024 0.366803893 0.112920013 540.123931 332591.3353 0.032181213 0.047733048 4.99E-06 5.302038913 0.184791386 AQISS(ph)PNLR ddPTM_HeLa_A486_30min_R1 2 AQISSPNLR 9 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 AQIS(0.077)S(0.923)PNLR;AQIS(0.149)S(0.851)PNLR ; 150.09 7.19E-05 878540000 1538180 1733080 1606370 492300 1989740 1499230 1665080 1696070 1539140 1663400 TRUE FALSE FALSE 1430361.525 1595744.429 2228399.484 1146099.279 1740168.256 1314270.246 1248459.373 1309911.886 1672553.894 1246873.813 1.147158205 1.279796249 1.787189257 0.919178242 1.395624992 1.054052328 1.001271628 1.050556899 1.341397884 1 20.24988404 -5.292770089 24.99976114 1.116156346 1.392223134 0.297913156 0.207649441 857.2948082 684060.7025 0.058048656 0.086108001 5.10E-06 5.292770089 0.276066788 AQKLPDLS(ph)PVENK ddPTM_HeLa_A485_30min_R1 2 AQKLPDLSPVENK 13 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 AQKLPDLS(1)PVENK;AQKLPDLS(1)PVENK ; 184.01 1.75E-17 759670000 933440 722330 487442 1196390 928750 999190 1363060 1228050 766150 1716570 TRUE FALSE FALSE 1141080.508 806800.2101 667767.08 1261745.756 836280.389 1051506.043 1071831.096 926868.812 919909.2775 1288660.69 0.885477858 0.626076528 0.518186894 0.979114026 0.64895313 0.815968122 0.831740352 0.719249698 0.713849103 1 20.29744102 -14 0.325983763 3.486055722 0.735829915 0.252412692 0.128316735 487.258232 4.269034314 838.1351085 0.110868195 1.00E-14 14 -2.750225807 AQKLPDLS(ph)PVENK ddPTM_HeLa_A486_30min_R1 2 AQKLPDLSPVENK 13 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 AQKLPDLS(1)PVENK;AQKLPDLS(1)PVENK ; 190.55 8.64E-18 951820000 1862640 1496730 656740 880950 1276970 1666510 2204630 2108330 983790 2501000 TRUE FALSE FALSE 1732078.555 1378123.664 911047.3161 2050896.121 1116800.515 1460912.94 1653008.256 1628309.284 1069065.709 1874733.321 0.923906635 0.73510384 0.48596102 1.093966858 0.595711669 0.779264402 0.88172981 0.868555151 0.570249484 1 20.83825396 -10.78615576 4.071117119 1.030732233 0.771871746 0.135202471 0.174101042 0.048553113 0.002550356 0.168536289 0.039004995 1.64E-11 10.78615576 -0.258860487 AQKLS(ph)FCEDQNAQDR ddPTM_HeLa_A485_30min_R1 2 AQKLSFCEDQNAQDR 15 1 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AQKLS(1)FCEDQNAQDR;AQKLS(1)FCEDQNAQDR ; 62.999 0.010595 466460000 432160 228750 177043 1027480 307480 477750 590700 535340 282120 963810 TRUE FALSE FALSE 528292.5011 255500.3226 242538.5731 1083608.631 276866.2116 502764.2513 464492.1194 404047.0256 338738.8962 723549.9046 0.730139687 0.353120526 0.33520642 1.497628047 0.38264978 0.69485774 0.641962795 0.558423162 0.46816245 1 19.464733 -11.16115174 2.341565645 1.880055938 0.630891185 0.107901671 0.319881141 18936138.61 4390249.051 88447527.3 0.083789184 6.90E-12 11.16115174 -1.249164753 AQLDYVDLYLIHSPMSLKPGEELS(ph)PTDENGK ddPTM_HeLa_A485_30min_R1 1 AQLDYVDLYLIHSPMSLKPGEELSPTDENGK 31 1 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 1 0 AQLDYVDLYLIHSPMSLKPGEELS(0.997)PT(0.003)DENGK 272.78 1.37E-77 359930000 211640 87632 71394 343970 129250 164950 265900 190250 102770 469200 TRUE FALSE FALSE 258718.5879 97879.8001 97805.61155 362760.2101 116381.4162 173586.5269 209088.2928 143590.8892 123394.9963 352237.075 0.734501295 0.277880459 0.277669838 1.029875149 0.330406492 0.49281163 0.593601036 0.407654104 0.350318025 1 18.42618724 -10.25638191 3.984167431 1.000497214 0.496883906 0.309475198 0.224296242 302243810.3 509899341 1994275.28 0.054890013 5.54E-11 10.25638191 -0.503613308 KTEVVMNSQQT(ph)PVGT(ph)PK ddPTM_HeLa_A486_30min_R1 1 KTEVVMNSQQTPVGTPK 17 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 2 0 KTEVVMNS(0.004)QQT(0.996)PVGT(1)PK 146.06 9.95E-08 567360000 437400 400570 223540 213880 446290 552660 547010 450160 507400 1150000 TRUE FALSE FALSE 406740.5187 368827.3743 310100.6746 497923.4489 390312.1467 484478.4282 410142.3123 347668.3949 551381.8405 862032.5148 0.471838952 0.427857845 0.359731993 0.577615624 0.452781235 0.562018741 0.4757852 0.403312391 0.63962998 1 19.71738276 -8.084168696 3.74077639 0.999779307 0.469225506 0.870499643 0.062689477 0.119116594 3.932396912 0.06138957 0.016176197 8.24E-09 8.084168696 -0.530553801 AQLEPVAS(ph)PAK ddPTM_HeLa_A485_30min_R1 4 AQLEPVASPAK 11 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK ;;; 188.63 1.02E-10 6916410000 5189250 3383240 3335210 8970160 5680160 4290680 6761930 5050760 3922550 10769830 TRUE FALSE FALSE 6343580.76 3778880.488 4569042.969 9460177.127 5114623.326 4515333.37 5317188.416 3812053.191 4709769.805 8085109.585 0.784600467 0.467387665 0.565118249 1.170074076 0.632597898 0.558475222 0.657651991 0.471490603 0.582523929 1 22.9468359 -5.965347997 24.99985119 0.618367866 0.737294721 0.033093884 0.215791922 579.1956 417860.9912 0.06800253 0.077107371 1.08E-06 5.965347997 0.118926854 AQLEPVAS(ph)PAK ddPTM_HeLa_A486_30min_R1 7 AQLEPVASPAK 11 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK ;;;;;; 190.87 7.43E-11 21046170000 12231450 13923040 8689240 7129320 13064170 17678420 20785190 18595620 12201940 20285040 TRUE FALSE FALSE 11374088.52 12819727.6 12053946.43 16597417.26 11425539.98 15497436.28 15584515.62 14361803.27 13259613.98 15205533.95 0.74802296 0.843096181 0.792734176 1.091537943 0.751406693 1.019197112 1.02492393 0.944511604 0.872025542 1 23.85809314 -5.214840661 24.7873703 0.952118694 0.799465483 0.401217909 0.091040564 401.6277533 213638.0963 0.023969325 0.041515936 6.10E-06 5.214840661 -0.152653211 AQLEPVAS(ph)PAKKPK ddPTM_HeLa_A485_30min_R1 2 AQLEPVASPAKKPK 14 2 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 AQLEPVAS(1)PAKKPK;AQLEPVAS(1)PAKKPK ; 136.35 4.11E-06 10251500000 5796800 4704800 2597800 6500300 6435400 8352600 14761000 18504000 4220900 9463000 TRUE FALSE FALSE 7086278.161 5254985.434 3558834.323 6855394.929 5794668.98 8789929.22 11607191.76 13965864.99 5067995.914 7104048.254 0.997498596 0.739717024 0.500958636 0.964998362 0.815685476 1.237312713 1.633884139 1.965902326 0.71339548 1 22.76020995 -6.338205034 3.243826316 1.411664268 0.786465678 0.342949057 0.343215537 0.254646172 5.229626966 0.126658316 0.111979657 4.59E-07 6.338205034 -0.62519859 AQLEPVAS(ph)PAKKPK ddPTM_HeLa_A486_30min_R1 3 AQLEPVASPAKKPK 14 2 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 AQLEPVAS(1)PAKKPK;AQLEPVAS(1)PAKKPK;AQLEPVAS(1)PAKKPK ;; 168.09 3.45E-12 6695540000 3904930 3030580 1156507 2358567 3320570 3763040 6137770 5626410 1879287 6813040 TRUE FALSE FALSE 3631214.572 2790425.804 1604337.483 5490863.171 2904073.148 3298794.385 4602035.027 4345399.267 2042185.11 5107010.439 0.711025485 0.546391247 0.314144156 1.075161924 0.568644451 0.645934529 0.901121132 0.85086947 0.399878781 1 22.28404758 -5.245512345 24.95635109 0.762141707 0.52610743 0.231161106 0.210585015 1283.431137 2011028.226 0.055841235 0.096322054 5.68E-06 5.245512345 -0.236034277 AQLGGPEAAK ddPTM_HeLa_A485_30min_R1 2 AQLGGPEAAK 10 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 170.99 5.64E-06 93079000 123627 136447 111715 135409 159628 165757 199369 186200 133838 217886 FALSE FALSE TRUE 151127.3996 152403.2897 153043.0273 142806.0508 143734.8758 174435.7802 156772.1845 140534.158 160698.059 163571.0301 0.923925218 0.931725438 0.935636508 0.873052219 0.878730639 1.066422215 0.958434904 0.859162885 0.982435942 1 17.31955773 AQLGGPEAAKS(ph)DETAAK ddPTM_HeLa_A485_30min_R1 1 AQLGGPEAAKSDETAAK 17 1 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 0 AQLGGPEAAKS(1)DETAAK 172.24 1.45E-12 554330000 274730 213480 114380 534670 380690 398760 770540 862330 245120 798200 TRUE FALSE FALSE 335842.7407 238444.629 156693.9217 563877.6682 342787.1669 419638.457 605907.8343 650842.2154 294313.3356 599223.4298 0.5604633 0.39792274 0.261494985 0.941014053 0.572052343 0.70030382 1.011155112 1.086142803 0.491157924 1 19.19273451 -5.621360598 0.970048584 0.877971092 0.406520767 0.393303674 0.214299697 0.593812674 1.170717538 0.096689442 0.181013619 2.39E-06 5.621360598 -0.471450325 AQLGGPEAAKS(ph)DETAAK ddPTM_HeLa_A486_30min_R1 4 AQLGGPEAAKSDETAAK 17 1 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 0 AQLGGPEAAKS(1)DETAAK;AQLGGPEAAKS(1)DETAAK;AQLGGPEAAKS(0.985)DET(0.015)AAK;AQLGGPEAAKS(1)DETAAK ;;; 202.73 2.05E-25 1485040000 1507400 1115130 448529 1077690 1099060 1721260 2602960 2368190 946610 3305000 TRUE FALSE FALSE 1401739.044 1026763.038 622211.4408 2508916.783 961205.6465 1508908.442 1951671.877 1829004.834 1028662.917 2477406.488 0.565809063 0.414450774 0.25115436 1.012719065 0.387988669 0.609067769 0.787788313 0.738274015 0.415217657 1 21.24039917 -14 0.092755346 2.261108386 0.271535764 0.269135576 0.21250187 279.0161502 1.784962351 70.23105125 4.544056637 1.00E-14 14 -1.989572623 AQLGINEDHS(ph)EGDEK ddPTM_HeLa_A485_30min_R1 1 AQLGINEDHSEGDEK 15 0 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1;C9J8U1;C9JLY8 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 AQLGINEDHS(1)EGDEK 161.51 5.14E-12 237160000 214840 202150 131260 315440 188980 218720 271240 223410 176120 340060 TRUE FALSE FALSE 262630.4168 225789.684 179818.5362 332671.6885 170164.4877 230171.841 213287.3582 168618.3472 211465.6685 255289.3003 1.028756068 0.884446327 0.704371613 1.303116457 0.666555502 0.901611782 0.835473159 0.660499077 0.828337374 1 17.96177355 AQLS(ph)PGIYDDTSAR ddPTM_HeLa_A485_30min_R1 7 AQLSPGIYDDTSAR 14 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR ;;;;;; 278.95 5.01E-49 3664370000 2202089 2945846 3121590 2224180 3149720 2552421 2986660 3119610 2525860 2797918 TRUE FALSE FALSE 2691936.101 3290337.064 4276396.041 2345681.321 2836122.817 2686061.817 2348535.692 2354520.756 3032776.933 2100448.534 1.281600599 1.56649259 2.035944214 1.116752581 1.350246279 1.278803919 1.118111515 1.120960936 1.443871099 1 21.00226601 -5.29749755 24.96118031 1.214765029 1.621860823 0.461578051 0.209553149 508.0709927 351709.8064 0.058920477 0.087396179 5.04E-06 5.29749755 0.407095794 AQLS(ph)PGIYDDTSAR ddPTM_HeLa_A486_30min_R1 6 AQLSPGIYDDTSAR 14 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR;AQLS(1)PGIYDDTSAR ;;;;; 294.29 6.26E-58 3822740000 2484030 2818860 2384300 760901 3093020 2311760 2542160 2655570 2215400 2498980 TRUE FALSE FALSE 2309912.325 2595483.267 3307564.814 1771415.982 2705064.59 2026558.555 1906084.68 2050954.682 2407432.656 1873219.142 1.23312445 1.385573748 1.765711624 0.945653363 1.444072682 1.081858769 1.017544951 1.094882406 1.28518474 1 20.83708826 -5.275487196 24.99852575 1.135247904 1.453880351 0.41089296 0.184679032 787.2556821 1400944.097 0.051728301 0.077146899 5.30E-06 5.275487196 0.318632447 AQLYLPS(ph)TSPPHEGLDGFAQELSR ddPTM_HeLa_A485_30min_R1 1 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L465;I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2 I3L465 CNTROB Centrobin 1 0 AQLYLPS(0.446)T(0.277)S(0.277)PPHEGLDGFAQELSR 98.812 0.00096418 174800000 3672.3 4496.4 4445.7 3245.9 5178.8 4334.7 4344.5 5106.7 4212.4 5238.1 TRUE FALSE FALSE 4489.190466 5022.214867 6090.349431 3423.215298 4663.180488 4561.658189 3416.262084 3854.273818 5057.790042 3932.33807 1.141608475 1.277157451 1.548785817 0.870529247 1.185854422 1.160037135 0.868761033 0.980148133 1.286204276 1 11.94117164 -5.267955067 24.99014279 1.052058483 1.317981269 0.388584488 0.15648059 540.3735878 2072537.601 0.044201814 0.067391828 5.40E-06 5.267955067 0.265922786 AQLYLPST(ph)SPPHEGLDGFAQELSR ddPTM_HeLa_A485_30min_R1 1 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L465;I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2 I3L465 CNTROB Centrobin 1 0 AQLY(0.002)LPS(0.078)T(0.46)S(0.46)PPHEGLDGFAQELSR 79.762 0.0072063 136340000 62251 91655 96954 58588 92957 70150 89817 109970 96048 74212 TRUE FALSE FALSE 76098.52019 102373.255 132821.3192 61788.51409 83701.87469 73822.94553 70626.86421 82999.68507 115323.9526 55712.31417 1.36591921 1.837533703 2.38405676 1.109063858 1.502394505 1.325074117 1.267706525 1.489790656 2.069990348 1 15.76570862 -5.280254594 24.99425228 1.411542761 1.860006384 0.266871037 0.354430931 1117.376112 1484326.998 0.100180617 0.148873376 5.24E-06 5.280254594 0.448463624 AQLYLPSTS(ph)PPHEGLDGFAQELSR ddPTM_HeLa_A485_30min_R1 2 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L465;I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2 I3L465 CNTROB Centrobin 1 0 AQLYLPS(0.038)T(0.203)S(0.759)PPHEGLDGFAQELSR;AQLYLPS(0.047)T(0.034)S(0.919)PPHEGLDGFAQELSR ; 149.84 1.73E-09 764370000 124780 202420 237000 109890 225000 178310 220520 261840 189710 174660 TRUE FALSE FALSE 152536.8805 226091.2582 324676.1624 115893.0124 202598.21 187646.0359 173404.1005 197623.3295 227783.0569 131120.4764 1.163333788 1.724301684 2.476166739 0.883866621 1.545130216 1.431096356 1.322479183 1.507188922 1.737204311 1 17.00053348 -5.28034224 24.99250345 1.378616369 1.781571035 0.218675035 0.378792415 1317.701855 1742202.458 0.106551973 0.158334629 5.24E-06 5.28034224 0.402954666 AQLYLPSTS(ph)PPHEGLDGFAQELSR ddPTM_HeLa_A486_30min_R1 2 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L465;I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2 I3L465 CNTROB Centrobin 1 0 AQLYLPS(0.172)T(0.172)S(0.655)PPHEGLDGFAQELSR;AQLYLPS(0.027)T(0.205)S(0.768)PPHEGLDGFAQELSR ; 177.78 1.86E-15 703990000 403440 512270 425900 102566 601740 396610 461970 404280 405890 397540 TRUE FALSE FALSE 375160.9394 471675.8595 590819.886 238778.8314 526264.1582 347680.2906 346380.2198 312234.2694 441072.872 297993.3964 1.258957225 1.582839973 1.982661002 0.801289003 1.766026242 1.166738239 1.162375489 1.047789223 1.480143108 1 18.18492084 -6.067416166 0.899313679 1.161451288 1.530993142 0.154028634 0.32259732 1.088478418 1.922441249 0.179713938 0.204202118 8.56E-07 6.067416166 0.369541854 AQPFGFIDS(ph)DT(ph)DAEEERIPATPVVIPMK ddPTM_HeLa_A485_30min_R1 2 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 AQPFGFIDS(1)DT(1)DAEEERIPATPVVIPMK;AQPFGFIDS(1)DT(1)DAEEERIPATPVVIPMK ; 102.05 0.00068266 98743000 113252 124635 99720 114756 163542 106673 179250 193396 124334 166500 TRUE FALSE FALSE 138444.5167 139209.9791 136610.5777 121024.8297 147259.1842 112258.2333 140951.7732 145965.3278 149286.6933 124994.6142 1.107603856 1.113727819 1.092931712 0.968240356 1.178124235 0.898104563 1.127662772 1.167772937 1.194345007 1 16.93150641 -6.967824263 24.99744552 1.138179378 1.06062456 0.098722081 0.088288405 360.7213737 280244.9118 0.035466867 0.023911574 1.08E-07 6.967824263 -0.077554818 AQPFGFIDS(ph)DT(ph)DAEEERIPATPVVIPMKK ddPTM_HeLa_A485_30min_R1 1 AQPFGFIDSDTDAEEERIPATPVVIPMKK 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 AQPFGFIDS(1)DT(1)DAEEERIPATPVVIPMKK 152.89 8.40E-09 423150000 305030 319620 229260 304200 417510 374490 505570 614910 301750 488680 TRUE FALSE FALSE 372882.8712 356996.7787 314072.8143 320817.6757 375941.2384 394097.7173 397550.8394 464102.3584 362308.4572 366861.0695 1.016414393 0.973111645 0.856108321 0.87449365 1.024750974 1.074242404 1.083655019 1.265062981 0.987590364 1 18.48487429 -6.043593628 2.91169213 1.099108499 0.928431852 0.414841726 0.0832954 0.242881816 4.11148499 0.029141841 0.030803546 9.04E-07 6.043593628 -0.170676647 AQPFGFIDS(ph)DTDAEEER ddPTM_HeLa_A485_30min_R1 1 AQPFGFIDSDTDAEEER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.982)DT(0.018)DAEEER 142.98 8.54E-08 80056000 23483 46270 32742 25791 33248 29647 35775 39238 29686 48613 TRUE FALSE FALSE 28706.71233 51680.874 44854.62831 27199.89702 29937.71238 31199.27108 28131.379 29614.81898 35643.7079 36494.67376 0.786600054 1.416121003 1.229073278 0.745311417 0.820331004 0.854899301 0.770835196 0.811483319 0.976682464 1 15.1553983 -5.257386594 24.99619722 0.841507369 1.171150417 0.390022579 0.164442792 304.923582 1880657.638 0.043400869 0.071809189 5.53E-06 5.257386594 0.329643047 AQPFGFIDS(ph)DTDAEEER ddPTM_HeLa_A486_30min_R1 2 AQPFGFIDSDTDAEEER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(1)DTDAEEER;AQPFGFIDS(0.947)DT(0.053)DAEEER ; 247.66 9.36E-43 96914000 50958 50369 35322 13182.7 38641 42916 49315 39595 44545 52430 TRUE FALSE FALSE 47386.10735 46377.577 48999.62436 30689.99182 33794.28547 37621.46026 36975.8654 30580.08285 48406.19647 39301.18674 1.205716959 1.180055384 1.246772131 0.780892242 0.859879517 0.957260159 0.940833305 0.77809566 1.231672641 1 15.26228526 -5.247924101 24.81842079 0.924248716 1.207768908 0.51348632 0.122458666 548.1589313 1006595.189 0.032119965 0.05524052 5.65E-06 5.247924101 0.283520192 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMK ddPTM_HeLa_A485_30min_R1 2 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.997)DT(0.003)DAEEERIPATPVVIPMK;AQPFGFIDS(0.972)DT(0.028)DAEEERIPATPVVIPMK ; 191.8 4.91E-21 697510000 83725 149030 149120 132200 189810 137790 141120 181870 178700 225880 TRUE FALSE FALSE 102349.3374 166457.7621 204285.6934 139421.7513 170911.8499 145004.4713 110968.5592 137266.0973 214563.4509 169572.273 0.603573542 0.981633136 1.204711653 0.822196629 1.00789974 0.855118993 0.654402735 0.809484327 1.265321547 1 17.37154077 -7.752504999 24.9953488 1.1326608 0.878100826 0.269182222 0.174128382 242.1161598 677371.7448 0.125691919 0.045965863 1.77E-08 7.752504999 -0.254559973 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMK ddPTM_HeLa_A486_30min_R1 4 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.995)DT(0.005)DAEEERIPATPVVIPMK;AQPFGFIDS(0.972)DT(0.028)DAEEERIPATPVVIPMK;AQPFGFIDS(0.992)DT(0.008)DAEEERIPATPVVIPMK;AQPFGFIDS(0.967)DT(0.033)DAEEERIPATPVVIPMK ;;; 247.09 1.49E-50 941621000 514123 463476 378142 150760.5 529821 478084.7 530014 531725 492343 577098 TRUE FALSE FALSE 478085.6326 426748.4738 524568.7094 350978.063 463365.9098 419103.4705 397398.8913 410662.825 535019.6877 432588.9045 1.105173128 0.986498889 1.212626362 0.811343193 1.071146081 0.968826214 0.918652529 0.949314281 1.236785507 1 18.72263714 -5.238908819 24.99687957 0.990672571 1.089939364 0.152669955 0.115174813 1647.395237 1827725.264 0.030275098 0.052385844 5.77E-06 5.238908819 0.099266793 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMKK ddPTM_HeLa_A485_30min_R1 2 AQPFGFIDSDTDAEEERIPATPVVIPMKK 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.944)DT(0.056)DAEEERIPATPVVIPMKK;AQPFGFIDS(0.947)DT(0.053)DAEEERIPATPVVIPMKK ; 276.58 1.58E-77 2675600000 242321 312060 247783 352380 401860 392320 440020 553300 358520 518460 TRUE FALSE FALSE 296224.4705 348552.7024 339448.2428 371629.6271 361849.4074 412861.2686 346006.1324 417602.3075 430471.6755 389217.4635 0.761077028 0.895521746 0.872130042 0.954812314 0.929684409 1.06074703 0.888978951 1.072927981 1.105992705 1 18.57021692 -2.926462447 0.312721268 1.05253171 0.209436733 0.66066503 0.059096125 10.37236809 0.426537414 0.059411981 3.901473235 0.001184507 2.926462447 -0.843094976 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMKK ddPTM_HeLa_A486_30min_R1 1 AQPFGFIDSDTDAEEERIPATPVVIPMKK 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.993)DT(0.007)DAEEERIPATPVVIPMKK 110.13 9.62E-05 769420000 4644.3 5649.9 0 0 0 7411.5 10369 10058 3538.6 15071 TRUE FALSE FALSE 4318.758553 5202.181347 0 0 0 6497.144485 7774.566528 7768.012965 3845.328697 11297.1235 0.382288337 0.460487251 0 0 0 0.575114938 0.688189921 0.687609812 0.340381221 1 13.46366786 -6.367279031 5.507766625 0.648934488 0.167297426 0.578366359 0.20962176 0.18743382 8.127990462 0.078465223 0.06887719 4.29E-07 6.367279031 -0.481637062 AQPFGFIDSDTDAEEER ddPTM_HeLa_A485_30min_R1 1 AQPFGFIDSDTDAEEER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 0 0 51.695 0.036498 47799000 27679 22453 37765 46455 53771 23987 38177 28296 41021 70373 FALSE FALSE TRUE 33836.09806 25078.68303 51735.84503 48992.71902 48417.37044 25242.92223 30020.17207 21356.36163 49253.53843 52830.30622 0.640467574 0.474702587 0.979283459 0.927360118 0.916469616 0.477811393 0.568237707 0.404244517 0.932297046 1 15.68907815 -7.976968715 24.60294159 1.000000274 0.682691704 0.267172953 0.194969808 229.1434269 244779.6739 0.205759587 0.053126897 1.05E-08 7.976968715 -0.31730857 AQPGS(ph)PESSGQPK ddPTM_HeLa_A485_30min_R1 5 AQPGSPESSGQPK 13 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 AQPGS(0.989)PES(0.01)SGQPK;AQPGS(0.985)PES(0.011)S(0.003)GQPK;AQPGS(0.941)PES(0.056)S(0.003)GQPK;AQPGS(0.998)PES(0.002)SGQPK;AQPGS(0.992)PES(0.006)S(0.001)GQPK ;;;; 162.86 8.51E-12 1749420000 1326082 1437273 1144513 1505768 1955275 1534139 2039783 2255821 1280774 1972071 TRUE FALSE FALSE 1621064.366 1605349.575 1567915.986 1588024.293 1760600.956 1614464.146 1603966.699 1702577.363 1537813.594 1480469.993 1.09496604 1.084351309 1.059066373 1.072648754 1.189217589 1.090507848 1.08341723 1.150024905 1.038733376 1 20.49762382 -7.967236389 6.579317703 1.000091056 1.101554063 0.469322803 0.036711218 0.13462224 16.815905 0.036415776 0.009438568 1.08E-08 7.967236389 0.101463007 AQPGS(ph)PESSGQPK ddPTM_HeLa_A486_30min_R1 5 AQPGSPESSGQPK 13 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 AQPGS(0.997)PES(0.002)S(0.001)GQPK;AQPGS(0.845)PES(0.117)S(0.038)GQPK;AQPGS(0.981)PES(0.019)SGQPK;AQPGS(0.959)PES(0.034)S(0.007)GQPK;AQPGS(0.995)PES(0.004)S(0.001)GQPK ;;;; 142.45 1.10E-07 1518120000 1613891 1757212 1145266 678691 1801871 1739582 2012673 2044662 1331721 1963924 TRUE FALSE FALSE 1500765.575 1617964.121 1588743.666 1580026.947 1575863.537 1524970.06 1509080.928 1579137.097 1447155.649 1472144.647 1.019441655 1.099052409 1.079203507 1.073282405 1.070454279 1.035883303 1.025090116 1.072677946 0.983025446 1 20.489488 -7.305918117 0.644214747 0.996867038 1.071516363 0.441878795 0.027242582 0.669137472 0.567073485 0.025337462 0.013150648 4.94E-08 7.305918117 0.074649325 AQPLEDLAGLKELFQT(ph)PVCTDKPTTHEK ddPTM_HeLa_A485_30min_R1 1 AQPLEDLAGLKELFQTPVCTDKPTTHEK 28 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AQPLEDLAGLKELFQT(1)PVCTDKPTTHEK 219.35 1.94E-38 68809000 35951 27219 16410 35755 58052 50457 67383 100000 34805 70375 TRUE FALSE FALSE 43948.17592 30402.02528 22480.74188 37708.20511 52272.13905 53098.8505 52986.07158 75474.84321 41790.04425 52831.80766 0.831850695 0.575449272 0.425515289 0.713740581 0.989406597 1.005054585 1.002919906 1.428587182 0.791001597 1 15.68911915 -5.746295593 2.846789318 1.064371266 0.601478346 0.561128409 0.174662253 0.182888804 3.040662878 0.055629935 0.070341596 1.79E-06 5.746295593 -0.46289292 AQPLEDLAGLKELFQT(ph)PVCTDKPTTHEK ddPTM_HeLa_A486_30min_R1 2 AQPLEDLAGLKELFQTPVCTDKPTTHEK 28 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AQPLEDLAGLKELFQT(1)PVCTDKPTTHEK;AQPLEDLAGLKELFQT(0.999)PVCT(0.001)DKPTTHEK ; 131.9 2.85E-06 149280000 139256 115681 58625 86378 155452 141094 216440 203612 86086 171507 TRUE FALSE FALSE 129494.8735 106514.0163 81326.17003 201092.3493 135953.7606 123687.2568 162284.4227 157253.9924 93548.00379 128560.5309 1.007267725 0.828512573 0.632590496 1.564184186 1.057507772 0.962093544 1.262319171 1.223190285 0.727657261 1 16.97208827 -5.217788246 24.99998133 1.120666003 0.823362568 0.263758987 0.222638181 627.4440007 359350.3981 0.05964985 0.103315878 6.06E-06 5.217788246 -0.297303435 AQPPRLS(ph)R ddPTM_HeLa_A485_30min_R1 1 AQPPRLSR 8 1 A0A087WVG4;A2AB22;A2AB23;E9PQZ5;A0A140TA01;E9PQT8;O43189-2;O43189 A0A087WVG4 PHF1 PHD finger protein 1 1 0 AQPPRLS(1)R 52.79 0.023902 270280000 37648 61494 61730 41629 59454 49915 53532 57965 52065 52732 TRUE FALSE FALSE 46022.66772 68685.18837 84566.4958 43903.08686 53534.551 52528.47222 42094.45088 43748.99286 62513.96793 39586.88286 1.162573671 1.735049173 2.136225176 1.109031166 1.352330548 1.3269161 1.063343407 1.105138614 1.579158636 1 15.27273485 -5.293914984 24.98415628 1.227311805 1.683659588 0.374740066 0.271257635 658.6484403 506710.5063 0.076520604 0.113508239 5.08E-06 5.293914984 0.456347783 AQPPRLS(ph)R ddPTM_HeLa_A486_30min_R1 2 AQPPRLSR 8 1 A0A087WVG4;A2AB22;A2AB23;E9PQZ5;A0A140TA01;E9PQT8;O43189-2;O43189 A0A087WVG4 PHF1 PHD finger protein 1 1 0 AQPPRLS(1)R;AQPPRLS(1)R ; 51.445 0.010913 115670000 126735 140566 145650 47368 168573 127055 137340 143790 117614 144106 TRUE FALSE FALSE 117851.531 129427.0382 202049.5806 110275.0978 147429.0025 111380.2459 102976.0794 111052.1559 127808.8762 108020.9196 1.091006551 1.198166417 1.87046714 1.020867978 1.36481899 1.031098849 0.953297562 1.028061567 1.183186337 1 16.72095121 -6.267160542 22.90491854 1.035518205 1.318082384 0.269898645 0.221697026 206.5431372 826899.0537 0.077680258 0.070535584 5.41E-07 6.267160542 0.282564179 AQPSDNAPAKGNKS(ph)PSPPDGS(ph)PAATPEIR ddPTM_HeLa_A485_30min_R1 2 AQPSDNAPAKGNKSPSPPDGSPAATPEIR 29 2 O00499-6;O00499-2;O00499;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 AQPSDNAPAKGNKS(0.999)PS(0.001)PPDGS(1)PAATPEIR;AQPSDNAPAKGNKS(0.999)PS(0.001)PPDGS(1)PAATPEIR ; 196.38 4.95E-22 889370000 259820 561740 226480 210960 452600 716840 994390 1960400 310580 360510 TRUE FALSE FALSE 317616.0626 627430.6065 310264.3766 222484.2106 407537.5548 754372.634 781930.4531 1479608.826 372910.5572 270641.4917 1.173567514 2.318309002 1.146403586 0.822062461 1.505820679 2.787350266 2.88917434 5.467043567 1.377876522 1 18.04602351 -6.2919763 3.641745588 3.02825405 1.384717967 0.214143387 1.1873246 0.302386317 8.617717171 0.419111425 0.381434282 5.11E-07 6.2919763 -1.643536083 AQPSDNAPAKGNKS(ph)PSPPDGS(ph)PAATPEIR ddPTM_HeLa_A486_30min_R1 1 AQPSDNAPAKGNKSPSPPDGSPAATPEIR 29 2 O00499-6;O00499-2;O00499;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 AQPS(0.003)DNAPAKGNKS(0.988)PS(0.008)PPDGS(0.999)PAAT(0.001)PEIR 104.78 0.00019544 222070000 170350 103290 66844 74905 155500 114120 207640 227480 75367 263330 TRUE FALSE FALSE 158409.3447 95104.92422 92727.78694 174382.6255 135995.74 100041.0347 155686.2758 175687.7699 81899.87224 197390.454 0.802517758 0.481811163 0.469768345 0.883440014 0.688968171 0.506817998 0.788722416 0.890052008 0.414913034 1 17.5906927 -14 0.317403369 4.111483087 0.647243534 0.248989339 0.172659117 459.527948 4.10799768 960.0083425 0.15756865 1.00E-14 14 -3.464239553 AQPSDNAPAKGNKS(ph)PSPPDGSPAATPEIR ddPTM_HeLa_A485_30min_R1 1 AQPSDNAPAKGNKSPSPPDGSPAATPEIR 29 2 O00499-6;O00499-2;O00499;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 AQPSDNAPAKGNKS(0.976)PS(0.024)PPDGSPAATPEIR 262.34 1.02E-63 1237500000 324570 549600 242140 207640 482030 797070 1074900 1861600 337520 355570 TRUE FALSE FALSE 396769.4767 613870.9391 331717.6623 218982.8474 434037.4007 838803.3527 845238.8339 1405039.681 405257.1681 266932.9428 1.486401313 2.29971967 1.242700353 0.820366513 1.626016617 3.1423748 3.166483781 5.26364287 1.518198405 1 18.02611784 -6.240908281 5.607031577 3.110669045 1.479155209 0.236143358 1.131554562 0.214328875 23.19696649 0.374002722 0.360868279 5.74E-07 6.240908281 -1.631513836 AQPSDNAPAKGNKS(ph)PSPPDGSPAATPEIR ddPTM_HeLa_A486_30min_R1 1 AQPSDNAPAKGNKSPSPPDGSPAATPEIR 29 2 O00499-6;O00499-2;O00499;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 AQPS(0.001)DNAPAKGNKS(0.829)PS(0.169)PPDGSPAATPEIR 80.593 0.0013996 590960000 231480 120180 68616 91209 189060 134580 228360 275450 74474 308330 TRUE FALSE FALSE 215254.4474 110656.4991 95185.9528 212339.1614 165346.3319 117976.8879 171221.9127 212736.048 80929.46628 231122.1611 0.931344906 0.478779268 0.411842605 0.918731291 0.715406654 0.510452513 0.740828624 0.920448507 0.350158833 1 17.81829607 -11.00373856 2.642394448 1.342035754 0.665602032 0.190666935 0.207521648 27809538.62 12428982.39 57843090.48 0.050150312 9.91E-12 11.00373856 -0.676433722 AQPSDNAPAKGNKSPS(ph)PPDGSPAATPEIR ddPTM_HeLa_A485_30min_R1 1 AQPSDNAPAKGNKSPSPPDGSPAATPEIR 29 2 O00499-6;O00499-2;O00499;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 AQPSDNAPAKGNKS(0.001)PS(0.999)PPDGSPAATPEIR 193.44 2.14E-21 1188300000 53163 183060 59584 26905 122590 290370 400660 1151700 73959 61143 TRUE FALSE FALSE 64988.92594 204467.2746 81626.6011 28374.75202 110384.5092 305573.3242 315055.7179 869243.7692 88801.89291 45901.17535 1.415844484 4.454510653 1.778311785 0.618170489 2.404829687 6.657200428 6.863783236 18.93728783 1.934632223 1 15.48624348 -6.409406854 2.497439383 8.608718234 2.112796968 0.195446558 4.69324897 0.38287763 4.67502635 1.821420695 1.532506993 3.90E-07 6.409406854 -6.495921266 AQPSMS(ph)PK ddPTM_HeLa_A485_30min_R1 3 AQPSMSPK 8 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 0 AQPS(0.035)MS(0.965)PK;AQPS(0.003)MS(0.997)PK;AQPS(0.001)MS(0.999)PK ;; 121.61 0.00070223 8086500000 7592000 6564400 4819940 10863000 8780800 7977000 12331700 10947100 6142100 14896000 TRUE FALSE FALSE 9280814.208 7332049.477 6603036.38 11456418.18 7906552.721 8394663.385 9696931.554 8262306.561 7374763.131 11182701.34 0.829925966 0.655659957 0.590468812 1.024476809 0.707034238 0.750682964 0.867136773 0.738847109 0.659479575 1 23.4147654 -10.37126879 3.026562986 1.003011047 0.758983625 0.274082269 0.118052425 32849937.12 41212948.03 869754.1768 0.029038748 4.25E-11 10.37126879 -0.244027422 AQPSMS(ph)PK ddPTM_HeLa_A486_30min_R1 2 AQPSMSPK 8 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 0 AQPS(0.007)MS(0.993)PK;AQPS(0.016)MS(0.984)PK ; 118.23 0.00085495 4751200000 3198900 3203500 1825210 2081270 2910680 3377400 4655800 4212300 2272480 5483000 TRUE FALSE FALSE 2974673.629 2949642.993 2531980.193 4845301.742 2545595.373 2960730.727 3490869.596 3253251.244 2469460.396 4110021.112 0.723761156 0.717671008 0.61605041 1.178899478 0.619363089 0.720368739 0.849355636 0.791541249 0.600838859 1 21.97071437 -11.28565858 2.225614908 2.023933679 0.763141134 0.170965058 0.159747349 10196882.49 1531650.576 52502364.97 0.039963566 5.18E-12 11.28565858 -1.260792545 AQPSSS(ph)EDELDNVFFKK ddPTM_HeLa_A486_30min_R1 1 AQPSSSEDELDNVFFKK 17 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 AQPS(0.054)S(0.248)S(0.698)EDELDNVFFKK 71.148 0.0043493 94175000 31061 29232 19423 13407 38013 30968 38115 36893 27156 37041 TRUE FALSE FALSE 28883.7843 26915.54986 26944.10577 31212.17355 33245.05508 27147.48302 28578.22386 28493.26927 29509.90394 27765.6925 1.040268824 0.969381544 0.970410004 1.124127322 1.197342911 0.977734772 1.029263861 1.026204164 1.062818943 1 14.76101576 -5.237842078 24.93938725 1.061792574 0.990956261 0.191342308 0.0622805 1321.892321 1397071.577 0.018053867 0.031247774 5.78E-06 5.237842078 -0.070836313 AQPTPSSSATQSKPTPVKPNYALK(ac)FTLAGHTK ddPTM_HeLa_A486_30min_R1 1 AQPTPSSSATQSKPTPVKPNYALKFTLAGHTK 32 3 V9GYQ5;V9GZ59;P61964 V9GYQ5 WDR5 WD repeat-containing protein 5 0 1 AQPTPSSSATQSKPTPVK(0.004)PNYALK(0.996)FTLAGHTK 64.39 0.0014991 16500000 13694 21677 14477 6431.5 23883 23509 30996 24636 21931 23428 FALSE TRUE FALSE 12734.12132 19959.23557 20082.88211 14972.85703 20887.37144 20608.6986 23240.47296 19026.9206 23831.99674 17561.47631 0.725116789 1.136535176 1.143575959 0.852596716 1.189385851 1.173517433 1.323378089 1.083446532 1.357061122 1 14.10012651 -5.840390155 9.896078148 1.198595875 0.989718454 0.338048459 0.151033197 0.431674915 50.62855338 0.045235206 0.051340005 1.44E-06 5.840390155 -0.20887742 AQQQEEQGS(ph)VNDVKEEEKEEK ddPTM_HeLa_A485_30min_R1 1 AQQQEEQGSVNDVKEEEKEEK 21 2 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 AQQQEEQGS(1)VNDVKEEEKEEK 220.99 6.64E-36 1197300000 500250 204450 149180 1392300 351230 393280 704740 648740 245940 1829900 TRUE FALSE FALSE 611528.8867 228358.649 204367.8899 1468357.824 316260.308 413871.5327 554166.5418 489635.4978 295297.9021 1373739.607 0.445156334 0.166231393 0.14876756 1.068876384 0.230218526 0.301273641 0.403399989 0.356425261 0.214959153 1 20.38967714 -10.36537277 3.236581287 1.00550428 0.372974043 0.359844009 0.251831257 181001399.9 245185047.9 9451880.074 0.062857844 4.31E-11 10.36537277 -0.632530237 AQQQEEQGS(ph)VNDVKEEEKEEK ddPTM_HeLa_A486_30min_R1 1 AQQQEEQGSVNDVKEEEKEEK 21 2 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 AQQQEEQGS(1)VNDVKEEEKEEK 287.05 1.08E-73 1383900000 389620 285080 73087 488620 169890 474160 847570 582740 232250 1325800 TRUE FALSE FALSE 362309.65 262489.2226 101388.2437 1137532.053 148580.812 415662.9601 635499.0213 450062.8231 252381.617 993811.0505 0.36456593 0.264123872 0.102019638 1.144616024 0.149506098 0.418251498 0.639456586 0.452865585 0.253953321 1 19.92261206 -11.03403309 2.643753846 1.704348006 0.427615147 0.272608227 0.283533497 114685373 37285893.38 489623227.8 0.073972935 9.25E-12 11.03403309 -1.276732859 AQRPQSCTS(ph)VGR ddPTM_HeLa_A486_30min_R1 1 AQRPQSCTSVGR 12 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 AQRPQSCT(0.032)S(0.968)VGR 93.649 0.02388 57393000 86468 107280 101460 31212 121320 101760 102720 107090 75935 82641 TRUE FALSE FALSE 80407.03972 98778.74209 140748.0292 72663.11337 106102.9143 89205.88582 77018.36954 82707.94476 82517.10694 61947.1557 1.297994053 1.594564609 2.272066047 1.172985467 1.712797192 1.440031989 1.243291458 1.335137083 1.332056428 1 15.91875042 -7.205410039 0.493258371 1.039782689 1.670385564 0.303691981 0.281377862 1.136638565 0.643150982 0.292508716 0.207498077 6.23E-08 7.205410039 0.630602874 AQS(ph)LKAPSIATIK ddPTM_HeLa_A485_30min_R1 1 AQSLKAPSIATIK 13 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 AQS(1)LKAPSIATIK 99.569 0.00040953 312030000 287190 159660 154200 474560 304600 264690 396300 306300 245500 796540 TRUE FALSE FALSE 351074.4247 178330.8481 211244.9968 500484.0112 274272.9545 278548.7591 311627.2675 231179.4447 294769.5981 597977.2372 0.587103326 0.298223472 0.35326595 0.836961643 0.458667885 0.465818332 0.521135669 0.386602416 0.492944513 1 19.18973104 -10.07747161 3.58649371 1.000247029 0.485966029 0.541936326 0.140923065 55499429.08 95600789.84 167030.8792 0.037550083 8.37E-11 10.07747161 -0.514281 AQS(ph)LKAPSIATIK ddPTM_HeLa_A486_30min_R1 1 AQSLKAPSIATIK 13 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 AQS(1)LKAPSIATIK 136.34 2.41E-05 0 281100 340020 122190 158610 283560 388480 440950 455070 270380 423140 TRUE FALSE FALSE 261396.3416 313075.5769 169505.2404 369252.0957 247993.2607 340553.2874 330619.6461 351460.4951 293816.7561 317182.9898 0.824118411 0.987050337 0.534408357 1.164161092 0.781861792 1.073680804 1.042362474 1.108068548 0.926332009 1 18.27495588 -5.731203928 1.252518502 1.029150754 0.823870258 0.211379543 0.157764156 0.685619231 2.25940087 0.060287088 0.089604637 1.86E-06 5.731203928 -0.205280496 AQS(ph)PGAVEEILDR ddPTM_HeLa_A485_30min_R1 1 AQSPGAVEEILDR 13 0 H7BXT7;E9PHY4;A0A0C4DH16;B8ZZS0;Q9NYM9 H7BXT7 BET1L BET1-like protein 1 0 AQS(1)PGAVEEILDR 202.79 1.61E-21 168820000 97611 99517 88577 92867 116270 106890 114340 117630 108590 146550 TRUE FALSE FALSE 119324.2302 111154.6475 121345.3183 97940.08906 104693.7506 112486.5951 89910.32493 88781.05806 130383.017 110017.7821 1.0845904 1.01033347 1.102960958 0.890220537 0.951607537 1.022440128 0.81723448 0.806970077 1.185108575 1 16.7473772 -5.258575609 24.93542965 0.942458176 1.060398796 0.188888847 0.105043413 390.7092348 3401966.543 0.028648386 0.046936965 5.51E-06 5.258575609 0.11794062 AQS(ph)PGAVEEILDR ddPTM_HeLa_A486_30min_R1 3 AQSPGAVEEILDR 13 0 H7BXT7;E9PHY4;A0A0C4DH16;B8ZZS0;Q9NYM9 H7BXT7 BET1L BET1-like protein 1 0 AQS(1)PGAVEEILDR;AQS(1)PGAVEEILDR;AQS(1)PGAVEEILDR ;; 229.02 8.71E-28 395381000 299889 324771 259244 120761 409942 380461 459045 450585 326377 405326 TRUE FALSE FALSE 278868.3297 299034.9632 359630.2196 281137.7109 358523.2518 333523.5901 344187.0857 347996.6317 354667.6211 303829.7314 0.917844111 0.984218897 1.183657103 0.925313364 1.180013721 1.097731906 1.132828852 1.145367276 1.167323618 1 18.21290353 -3.007920136 0.650418993 1.118534806 4.18E-14 0.341897332 0.081574935 14.99694412 1.373296989 0.033105271 17.99355403 0.000981928 3.007920136 -1.118534806 AQS(ph)PGAVEEILDRENKR ddPTM_HeLa_A486_30min_R1 2 AQSPGAVEEILDRENKR 17 2 H7BXT7;E9PHY4;A0A0C4DH16;B8ZZS0;Q9NYM9 H7BXT7 BET1L BET1-like protein 1 0 AQS(1)PGAVEEILDRENKR;AQS(1)PGAVEEILDRENKR ; 255.67 9.20E-52 314550000 196895 167655 141719 87664 290280 173295 253035 254996 152462 269670 TRUE FALSE FALSE 183093.6773 154369.4072 196596.3922 204086.2223 253870.3756 151915.6248 189722.9667 196938.9773 165677.5289 202142.8767 0.905763687 0.763664838 0.972561563 1.009613723 1.255895729 0.751525986 0.938558755 0.97425633 0.819606071 1 17.62501584 -4.780680661 24.66044664 0.967710927 0.834714279 0.141199349 0.128659302 350.4073154 449097.5276 0.034343349 0.071673007 1.66E-05 4.780680661 -0.132996648 AQS(ph)PTPSLPASWK ddPTM_HeLa_A485_30min_R1 4 AQSPTPSLPASWK 13 0 H0Y9Y3;Q9UMS6-5;Q9UMS6;Q9UMS6-3;Q9UMS6-4;Q9UMS6-2 H0Y9Y3 SYNPO2 Synaptopodin-2 1 0 AQS(0.995)PT(0.005)PSLPASWK;AQS(0.996)PT(0.003)PS(0.001)LPASWK;AQS(0.973)PT(0.027)PSLPASWK;AQS(0.711)PT(0.289)PSLPASWK ;;; 236.12 8.24E-35 1283330000 1160900 1403860 1130570 1379170 1646970 1451370 1633510 1935820 1431880 1855890 TRUE FALSE FALSE 1419138.2 1568029.215 1548814.89 1454510.565 1482991.884 1527361.489 1284497.244 1461057.11 1719245.182 1393250.778 1.01858059 1.125446502 1.1116555 1.043968959 1.064411309 1.09625741 0.921942599 1.048667715 1.233981139 1 20.41002353 -5.272658517 23.84933539 1.056623602 1.089249429 0.022773633 0.078397813 1645.86444 3498734.645 0.022403611 0.033579791 5.34E-06 5.272658517 0.032625827 AQS(ph)PTPSLPASWK ddPTM_HeLa_A486_30min_R1 4 AQSPTPSLPASWK 13 0 H0Y9Y3;Q9UMS6-5;Q9UMS6;Q9UMS6-3;Q9UMS6-4;Q9UMS6-2 H0Y9Y3 SYNPO2 Synaptopodin-2 1 0 AQS(0.992)PT(0.008)PSLPASWK;AQS(0.689)PT(0.31)PS(0.001)LPASWK;AQS(0.996)PT(0.004)PSLPASWK;AQS(0.999)PT(0.001)PSLPASWK ;;; 252.66 3.98E-41 1221590000 2231670 2376330 1849930 831480 2711410 2119590 2346490 2548040 1844360 2209340 TRUE FALSE FALSE 2075241.457 2188020.956 2566272.439 1935727.461 2371319.675 1858096.536 1759373.383 1967906.915 2004230.61 1656106.884 1.253084253 1.32118342 1.549581409 1.168842108 1.431863908 1.121966556 1.062354973 1.188272892 1.210206074 1 20.65936436 -6.275919109 24.0029793 1.124939302 1.345181787 0.519469433 0.10966476 404.7219951 670903.0974 0.037778087 0.033485102 5.30E-07 6.275919109 0.220242485 AQS(ph)PVSGPNVAHLTDGATLNDR ddPTM_HeLa_A485_30min_R1 3 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 AQS(0.99)PVS(0.01)GPNVAHLTDGATLNDR;AQS(0.999)PVS(0.001)GPNVAHLTDGATLNDR;AQS(0.999)PVS(0.001)GPNVAHLTDGATLNDR ;; 224.14 3.72E-36 2107690000 368657 524430 476160 304506 567310 452810 521410 574990 445850 486009 TRUE FALSE FALSE 450663.4778 585757.5266 652311.3987 321140.3917 510826.6245 476518.4314 410006.494 433972.801 535328.0054 364855.9006 1.235182101 1.605448961 1.787860351 0.88018418 1.400077739 1.306045566 1.123749111 1.189436159 1.467231322 1 18.47696726 -5.251396588 24.97642675 1.213311694 1.549092296 0.367916932 0.207785854 767.6047469 1909029.745 0.055429185 0.094591243 5.61E-06 5.251396588 0.335780602 AQS(ph)PVSGPNVAHLTDGATLNDR ddPTM_HeLa_A486_30min_R1 2 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 AQS(0.997)PVS(0.003)GPNVAHLTDGATLNDR;AQS(0.997)PVS(0.003)GPNVAHLTDGATLNDR ; 207.69 3.31E-27 829180000 151699 192477 186383 35677 320940 249250 260490 281700 241300 221800 TRUE FALSE FALSE 141065.6835 177224.4215 258555.4891 83057.85902 280684.7126 218500.0692 195312.6468 217563.0595 262216.0783 166259.8363 0.848465189 1.06594849 1.555128977 0.499566587 1.688229213 1.314208374 1.174743408 1.308572559 1.577146255 1 17.34308017 -5.787749482 24.99990966 1.349310972 1.037742245 0.239271466 0.302671915 359.1988654 341309.5363 0.091343112 0.103603941 1.63E-06 5.787749482 -0.311568727 AQS(ph)SPAAPASLSAPEPASQAR ddPTM_HeLa_A485_30min_R1 4 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10;H0YI15 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 AQS(0.925)S(0.075)PAAPASLSAPEPASQAR;AQS(0.436)S(0.436)PAAPAS(0.128)LSAPEPASQAR;AQS(0.5)S(0.5)PAAPASLSAPEPASQAR;AQS(0.5)S(0.5)PAAPASLSAPEPASQAR ;;; 454.25 4.99E-216 6582540000 527299 750227 844866 772476 1080660 968180 1166220 1166020 885623 1059450 TRUE FALSE FALSE 644594.8434 837959.5215 1157417.091 814674.4079 973065.696 1018872.408 917047.5699 880051.7668 1063359.413 795348.6127 0.810455734 1.053575134 1.455232426 1.024298521 1.223445519 1.281038769 1.153013352 1.106498148 1.336972738 1 19.60122783 -4.411829852 3.953520146 1.200361295 0.821099263 0.440878728 0.132748017 0.198309792 4.988942531 0.031504977 0.154171852 3.87E-05 4.411829852 -0.379262032 AQS(ph)SPAAPASLSAPEPASQAR ddPTM_HeLa_A486_30min_R1 4 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10;H0YI15 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 AQS(0.5)S(0.5)PAAPASLSAPEPASQAR;AQS(0.5)S(0.5)PAAPASLSAPEPASQAR;AQS(0.92)S(0.08)PAAPASLSAPEPASQAR;AQS(0.975)S(0.025)PAAPASLSAPEPASQAR ;;; 407.23 3.47E-175 6609340000 985656 1157972 1007482 305267 1285507 1067969 1117922 1182091 1071771 1244988 TRUE FALSE FALSE 916566.6043 1066210.081 1397606.012 710677.0033 1124266.725 936213.8431 838206.0914 912954.6842 1164672.973 933234.9013 0.982139227 1.142488435 1.497592953 0.761519959 1.204698542 1.00319206 0.898172679 0.978268904 1.247995517 1 19.83188074 -5.269625155 24.99961995 1.015244815 1.200915034 0.203275147 0.175837157 1008.084034 3078720.542 0.048839536 0.073938026 5.37E-06 5.269625155 0.185670219 AQS(ph)SPASATFPVSVQEPPTKPR ddPTM_HeLa_A485_30min_R1 3 AQSSPASATFPVSVQEPPTKPR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 AQS(0.815)S(0.177)PAS(0.007)AT(0.002)FPVSVQEPPTKPR;AQS(0.873)S(0.123)PAS(0.004)ATFPVSVQEPPTKPR;AQS(0.907)S(0.093)PASATFPVSVQEPPTKPR ;; 291.06 1.57E-87 6306500000 600080 735650 689700 803520 965540 913300 1049700 1189580 784080 1101420 TRUE FALSE FALSE 733565.7257 821677.8682 944848.7308 847414.263 869407.4474 961118.9758 825423.0197 897833.6398 941437.664 826856.2641 0.887174419 0.993737248 1.142700094 1.024862845 1.051461403 1.162377329 0.998266634 1.085840041 1.13857475 1 19.65727704 -4.459070637 3.5473466 1.076317423 0.893207404 0.520439729 0.056181353 0.185228107 4.277141795 0.013802723 0.066262207 3.47E-05 4.459070637 -0.18311002 AQS(ph)SPASATFPVSVQEPPTKPR ddPTM_HeLa_A486_30min_R1 3 AQSSPASATFPVSVQEPPTKPR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 AQS(0.494)S(0.494)PAS(0.003)AT(0.008)FPVSVQEPPTKPR;AQS(0.902)S(0.098)PASATFPVSVQEPPTKPR;AQS(0.5)S(0.5)PASATFPVSVQEPPTKPR ;; 273.21 3.60E-73 6397970000 1068250 1101360 742200 384747 1101500 1138810 1271000 1285130 955830 1317710 TRUE FALSE FALSE 993371.1914 1014084.223 1029599.717 895710.46 963339.5989 998315.2008 952982.3567 992533.9532 1038682.114 987746.8391 1.005694123 1.026664103 1.042372069 0.906821895 0.975289984 1.010699464 0.964804259 1.004846499 1.051567135 1 19.9137818 -7.530140965 24.05186973 1.026591345 0.990304855 0.12570315 0.037231412 248.838772 824095.6173 0.026075136 0.009908565 2.95E-08 7.530140965 -0.03628649 AQS(ph)TDSLGTSGSLQSK ddPTM_HeLa_A485_30min_R1 1 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 AQS(0.97)T(0.03)DSLGTSGSLQSK 248.7 1.94E-43 0 69804 70547 56391 106310 78290 70062 97071 99048 69742 130790 TRUE FALSE FALSE 85331.65898 78796.85797 77252.37753 112117.4461 70495.17271 73730.33798 76330.98785 74756.3227 83738.57969 98186.46001 0.869077661 0.802522649 0.786792573 1.141882965 0.717972444 0.750921644 0.777408492 0.761370994 0.85285262 1 16.58323647 AQS(ph)TDSLGTSGSLQSK ddPTM_HeLa_A486_30min_R1 1 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 AQS(0.958)T(0.021)DS(0.021)LGTSGSLQSK 301.7 6.63E-85 0 116070 128980 73257 47503 120700 137980 153390 145640 113580 158230 TRUE FALSE FALSE 107934.0924 118759.1551 101624.0723 110589.3847 105560.6805 120957.4305 115010.1996 112480.9513 123425.2059 118608.1781 0.910005483 1.001272905 0.856804935 0.932392576 0.889994958 1.019806833 0.969665005 0.948340604 1.040612948 1 16.85584396 -6.26199597 24.99977232 0.990830112 0.92010461 0.461369476 0.041725423 51.26818258 2302730.383 0.014032663 0.013138612 5.47E-07 6.26199597 -0.070725502 AQS(ph)VRTLARNGSTVK ddPTM_HeLa_A485_30min_R1 1 AQSVRTLARNGSTVK 15 2 Q5H9R4-2;Q5H9R4-3;Q5H9R4 Q5H9R4-2 ARMCX4 Armadillo repeat-containing X-linked protein 4 1 0 AQS(0.883)VRT(0.113)LARNGS(0.002)T(0.002)VK 40.179 0.03675 1292700000 687430 960300 976880 315630 1489400 641900 1010400 669560 915200 799190 TRUE FALSE FALSE 840346.4319 1072598.732 1338268.563 332872.0677 1341110.106 675508.8914 794519.7858 505349.3602 1098872.245 599966.641 1.400655261 1.787763949 2.230571622 0.554817626 2.23530779 1.125910751 1.32427327 0.842295764 1.831555574 1 19.19452276 -6.088031964 0.761404147 1.20529757 1.70058674 0.09830286 0.518308993 1.582149275 2.036703528 0.328452823 0.386800029 8.17E-07 6.088031964 0.49528917 AQS(ph)YDIQAWK ddPTM_HeLa_A486_30min_R1 1 AQSYDIQAWK 10 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 AQS(1)YDIQAWK 89.629 0.0033123 95882000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 AQS(ph)YPDNHQEFSDYDNPIFEK ddPTM_HeLa_A485_30min_R1 3 AQSYPDNHQEFSDYDNPIFEK 21 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 AQS(1)YPDNHQEFSDYDNPIFEK;AQS(1)YPDNHQEFSDYDNPIFEK;AQS(1)YPDNHQEFSDYDNPIFEK ;; 319.24 2.37E-102 2617870000 487390 558400 480740 557470 697030 607910 802710 813640 528860 755080 TRUE FALSE FALSE 595808.224 623700.0226 658585.7313 587923.1745 627631.2458 639739.2276 631204.451 614093.5143 634997.351 566852.4522 1.051081673 1.100286362 1.1618292 1.037171441 1.107221541 1.128581565 1.113525131 1.083339257 1.12021629 1 19.11261373 -10.26296345 3.3540911 0.999665948 1.10122682 0.432060986 0.0345068 9102837.487 13374654.85 31645.14256 0.008444356 5.46E-11 10.26296345 0.101560872 AQS(ph)YPDNHQEFSDYDNPIFEK ddPTM_HeLa_A486_30min_R1 4 AQSYPDNHQEFSDYDNPIFEK 21 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 AQS(1)YPDNHQEFSDYDNPIFEK;AQS(1)YPDNHQEFSDYDNPIFEK;AQS(1)YPDNHQEFSDYDNPIFEK;AQS(1)YPDNHQEFSDYDNPIFEK ;;; 264.33 2.85E-59 1727291000 946760 972941 749869 375625 1147797 1016119 1217058 1202720 878850 1212490 TRUE FALSE FALSE 880397.0131 895841.6118 1040238.359 874473.983 1003829.597 890760.5689 912537.2157 928886.9112 955029.4256 908874.612 0.968667186 0.985660288 1.14453451 0.962150303 1.104475341 0.980069811 1.004029823 1.022018768 1.050782377 1 19.79372175 -6.356049829 0.002920781 0.770114144 1.278108476 0 0.057417778 764629.9454 933.2934198 80564.4876 81750.92351 4.41E-07 6.356049829 0.507994332 AQSGSDS(ph)SPEPK ddPTM_HeLa_A485_30min_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQSGS(0.001)DS(0.653)S(0.346)PEPK;AQSGS(0.002)DS(0.499)S(0.499)PEPK ; 184.51 6.20E-13 1281980000 1330850 1427040 970260 2104050 1533270 1529360 2080750 2236080 1328870 2654060 TRUE FALSE FALSE 1626892.991 1593919.914 1329199.55 2218988.924 1380612.255 1609434.925 1636180.764 1687677.874 1595562.02 1992451.686 0.816528201 0.799979204 0.667117581 1.113697732 0.692921321 0.807766098 0.821189681 0.847035783 0.800803367 1 20.92611331 -10.88952624 2.310718753 1.100461737 0.819141887 0.188632507 0.112884091 15370107.93 7759649.559 8414598.418 0.027648882 1.29E-11 10.88952624 -0.28131985 AQSGSDS(ph)SPEPK ddPTM_HeLa_A486_30min_R1 1 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQSGSDS(0.858)S(0.142)PEPK 162.88 2.77E-10 207210000 570030 409590 292820 283590 437100 629670 674290 577790 425860 855310 TRUE FALSE FALSE 530073.8406 377132.5967 406207.746 660211.8518 382274.8422 551987.7174 505575.5101 446239.8301 462773.8877 641134.8089 0.82677439 0.588226675 0.633576185 1.02975512 0.596247212 0.860954217 0.788563502 0.696015602 0.72180434 1 19.29026821 -11.41997925 2.013282598 2.768494547 0.747620288 0.255484549 0.128468702 7268285.796 626114.0918 58522535.95 0.031343593 3.80E-12 11.41997925 -2.020874259 AQSGSDSS(ph)PEPK ddPTM_HeLa_A485_30min_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQSGSDS(0.244)S(0.756)PEPK;AQSGSDS(0.4)S(0.6)PEPK ; 211.06 1.42E-17 1552300000 1380190 1425670 951760 2195100 1611770 1567180 2160040 2275600 1392540 2860470 TRUE FALSE FALSE 1687208.504 1592389.705 1303855.63 2315012.755 1451296.52 1649235.121 1698529.808 1717505.532 1672010.005 2147407.472 0.785695554 0.741540544 0.607176629 1.07805006 0.675836579 0.768012193 0.790967634 0.799804208 0.778617951 1 21.03416454 -14 0.321682499 3.099833961 0.771477191 0.248379565 0.114697049 473.3683579 4.190125386 676.9574945 0.099766633 1.00E-14 14 -2.32835677 AQSGSDSS(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQSGSDS(0.112)S(0.888)PEPK;AQSGSDS(0.362)S(0.638)PEPK ; 173.71 8.48E-11 1163460000 1937670 1505650 1070170 941900 1502840 2276180 2392930 2038200 1545780 3077500 TRUE FALSE FALSE 1801849.339 1386336.811 1484568.484 2192790.801 1314339.794 1995368.054 1794193.604 1574146.354 1679769.455 2306873.969 0.781078361 0.600959059 0.643541218 0.950546424 0.569749285 0.864966219 0.777759699 0.682372065 0.728158312 1 21.13750776 -11.20660702 2.111857017 1.732087409 0.731978986 0.341000087 0.111240881 8506416.414 1611788.146 29720578.01 0.028494924 6.21E-12 11.20660702 -1.000108424 AQSLVIS(ph)PPAPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 AQSLVIS(1)PPAPS(1)PR;AQSLVIS(1)PPAPS(1)PR ; 135.29 2.31E-05 323330000 320920 472390 453880 326310 582910 405910 444870 583020 424920 496680 TRUE FALSE FALSE 392307.5468 527631.9013 621789.0995 344135.489 524873.4337 427162.8199 349819.8902 440033.4309 510197.5464 372866.8167 1.052138536 1.415068002 1.667590334 0.922944799 1.407670005 1.145617687 0.938189923 1.180135671 1.368310409 1 18.50830088 -5.270615808 24.97520579 1.148342461 1.381945872 0.221323828 0.206177442 1000.985451 2724350.238 0.058115323 0.087599261 5.36E-06 5.270615808 0.233603411 AQSLVIS(ph)PPAPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 AQSLVIS(1)PPAPS(1)PR;AQSLVIS(1)PPAPS(1)PR ; 135.29 2.31E-05 128460000 383220 379330 361500 127378 410190 312910 374380 353850 308440 338050 TRUE FALSE FALSE 356358.257 349270.5093 501482.4813 296542.4213 358740.1453 274306.3456 280706.1642 273286.0795 335175.8275 253400.0797 1.406306807 1.378336225 1.979014695 1.17025386 1.415706522 1.082502997 1.107758784 1.078476691 1.322713979 1 17.95105745 -5.77244327 1.671937256 1.131326466 1.549329814 0.44163972 0.202199052 0.340762588 1.972993142 0.071877637 0.095421375 1.69E-06 5.77244327 0.418003348 AQSLVISPPAPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AQSLVISPPAPS(1)PR;AQSLVIS(0.004)PPAPS(0.996)PR ; 175.69 1.29E-12 1298290000 308260 439880 373240 339460 396820 324220 470760 660250 423440 793950 TRUE FALSE FALSE 376831.3735 491320.1396 511317.0078 358003.8402 357311.2075 341195.6579 370178.2802 498322.6523 508420.524 596032.8766 0.63223253 0.824317179 0.857867121 0.600644452 0.59948238 0.572444359 0.621070238 0.836065714 0.853007517 1 19.18503238 -7.721415168 1.745231862 0.978281357 0.677939339 0.546677368 0.096070759 0.299207761 1.740675912 0.100704563 0.030238531 1.90E-08 7.721415168 -0.300342018 AQSLVISPPAPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AQSLVISPPAPS(1)PR;AQSLVISPPAPS(1)PR;AQSLVISPPAPS(1)PR ;; 175.19 1.53E-12 1027350000 672380 638900 633380 165092 776810 634350 687230 648260 551631 788650 TRUE FALSE FALSE 625249.6342 588271.2372 878641.6985 384342.5193 679375.2463 556090.3466 515277.7852 500665.3494 599446.8192 591166.9068 1.057653307 0.995101773 1.486283634 0.650142142 1.14921055 0.940665555 0.871628265 0.846910312 1.014006049 1 19.17320598 -5.268805202 24.99985969 0.926087653 1.161221794 0.316619156 0.171043095 703.6522638 2388219.945 0.04648741 0.070571454 5.39E-06 5.268805202 0.235134141 AQSNGSGNGS(ph)DSEMDTSSLER ddPTM_HeLa_A485_30min_R1 2 AQSNGSGNGSDSEMDTSSLER 21 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AQSNGSGNGS(1)DSEMDTSSLER;AQSNGSGNGS(1)DSEMDTSSLER ; 477.88 3.70E-262 1407070000 368750 574910 525700 424550 668830 544910 612260 698050 564480 573770 TRUE FALSE FALSE 450777.1653 642140.7234 720178.3062 447742.0915 602238.9368 573440.645 481445.6493 526852.143 677765.9583 430739.6985 1.046518737 1.490786026 1.671957121 1.039472547 1.398150528 1.331292767 1.117718313 1.223133472 1.573493135 1 18.71645677 -5.271597679 24.98299623 1.25500324 1.411857182 0.103457691 0.215973143 1638.795191 4030396.054 0.059979001 0.090125933 5.35E-06 5.271597679 0.156853942 AQSNGSGNGS(ph)DSEMDTSSLER ddPTM_HeLa_A486_30min_R1 2 AQSNGSGNGSDSEMDTSSLER 21 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AQSNGSGNGS(1)DSEMDTSSLER;AQSNGSGNGS(1)DSEMDTSSLER ; 518.88 6.50E-288 1397420000 570340 658060 652990 200539 886290 655010 668760 699980 642020 635500 TRUE FALSE FALSE 530362.1112 605912.929 905845.2157 466864.9267 775123.2439 574201.5259 501429.1746 540609.8345 697670.8105 476366.6636 1.113348502 1.271946539 1.901571384 0.980053732 1.627156775 1.205377223 1.052611807 1.134860761 1.464566822 1 18.86171293 -6.495021642 24.24445871 1.167783377 1.383416852 0.133341135 0.265807766 1028.768142 895354.0813 0.091588522 0.080564648 3.20E-07 6.495021642 0.215633475 AQSPGT(ph)PR ddPTM_HeLa_A486_30min_R1 1 AQSPGTPR 8 0 Q14678;Q14678-2;Q5W0W3 Q14678 KANK1 KN motif and ankyrin repeat domain-containing protein 1 1 0 AQS(0.001)PGT(0.999)PR 96.756 0.01354 367200000 635360 609090 862730 258740 898960 944380 734410 684620 890740 790220 TRUE FALSE FALSE 590824.545 560823.4901 1196802.161 602359.796 786204.0543 827871.9974 550652.8502 528746.9711 967950.0604 592343.7685 0.997435233 0.946787187 2.020452015 1.016909146 1.327276653 1.397620843 0.929617022 0.892635323 1.634101871 1 19.17607517 -6.747729114 24.98504134 1.105141448 1.292312177 0.054687885 0.345182339 736.0119561 1341279.794 0.132511913 0.102081911 1.79E-07 6.747729114 0.187170729 AQSPVS(ph)GPNVAHLTDGATLNDR ddPTM_HeLa_A485_30min_R1 1 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 AQS(0.373)PVS(0.627)GPNVAHLTDGATLNDR 234.8 1.11E-46 1049200000 137860 218880 222670 103570 202930 169170 220550 227400 177230 193920 TRUE FALSE FALSE 168526.4814 244476.112 305044.8991 109227.7668 182725.5767 178027.4796 173427.6908 171629.7935 212798.4354 145579.3128 1.157626576 1.679332779 2.09538631 0.75029731 1.255161692 1.222889957 1.191293511 1.178943561 1.461735402 1 17.15144583 -5.263626509 24.99999761 1.167885554 1.647636961 0.406333206 0.272363834 197.5260105 2257830.173 0.075731933 0.118751677 5.45E-06 5.263626509 0.479751407 AQSPVS(ph)GPNVAHLTDGATLNDR ddPTM_HeLa_A486_30min_R1 1 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 AQS(0.491)PVS(0.509)GPNVAHLTDGATLNDR 165.17 5.87E-14 692010000 77609 88531 93052 19518 151380 115900 131320 133170 118820 81543 TRUE FALSE FALSE 72169.00987 81515.48114 129084.2264 45438.89039 132392.5088 101601.4364 98462.34704 102850.0981 129119.4133 61124.10204 1.180696443 1.333606195 2.111838409 0.743387451 2.165962434 1.662215607 1.610859608 1.68264391 2.112414072 1 15.89945375 -4.540740643 24.87362359 1.652615991 1.218923509 0.109104835 0.440752422 378.7590251 527440.7647 0.105156324 0.278335471 2.88E-05 4.540740643 -0.433692482 AQSTDS(ph)LGTSGSLQSK ddPTM_HeLa_A485_30min_R1 4 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 AQSTDS(0.995)LGT(0.004)S(0.001)GSLQSK;AQSTDS(0.793)LGT(0.188)S(0.018)GSLQSK;AQSTDS(1)LGTSGSLQSK;AQSTDS(0.997)LGT(0.003)SGSLQSK ;;; 378.9 2.52E-119 385604000 731290 694420 597510 840120 925170 760990 1055860 1018650 690910 1130080 TRUE FALSE FALSE 893962.9376 775626.3783 818553.8135 886013.6283 833056.8263 800834.2597 830266.8854 768824.4903 829569.2996 848371.8536 1.053739506 0.914252842 0.964852629 1.044369429 0.981947742 0.943966088 0.97865916 0.906235264 0.977836896 1 19.69433723 -6.122294647 6.157885153 0.956761658 0.989564591 0.10588524 0.043503157 0.556775389 25.78556787 0.014339684 0.014382178 7.55E-07 6.122294647 0.032802933 AQSTDS(ph)LGTSGSLQSK ddPTM_HeLa_A486_30min_R1 4 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 AQSTDS(0.984)LGT(0.014)S(0.002)GSLQSK;AQSTDS(0.999)LGT(0.001)SGSLQSK;AQSTDS(1)LGTSGSLQSK;AQSTDS(1)LGTSGSLQSK ;;; 333.04 1.10E-90 413059000 812580 884610 534437 347414 874870 877380 999460 1001600 697303 1017460 TRUE FALSE FALSE 755622.3382 814510.2819 741385.3191 808797.3493 765135.6468 769137.7761 749384.5368 773557.5448 757745.7855 762681.3934 0.990744424 1.067956146 0.972077365 1.060465558 1.003217927 1.008465373 0.982565647 1.014260413 0.993528611 1 19.54072098 -5.966386999 24.99992971 1.000276035 1.023590473 0.136856136 0.027717211 354.5533481 263700.3024 0.007928386 0.008989911 1.08E-06 5.966386999 0.023314438 AQT(ph)LPTSVVTITS(ph)ESSPGKR ddPTM_HeLa_A486_30min_R1 1 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 AQT(0.999)LPT(0.007)S(0.006)VVT(0.004)IT(0.174)S(0.477)ES(0.2)S(0.132)PGKR 73.212 0.0031665 458990000 310370 329700 186080 254830 329790 448330 587560 489650 250940 494730 TRUE FALSE FALSE 288614.6658 303573.3713 258135.1594 593257.1184 288424.663 393019.6029 440546.2734 378167.384 272691.6812 370846.3878 0.778259342 0.818596004 0.696070308 1.599738161 0.777746993 1.059790835 1.187948131 1.019741317 0.735322468 1 18.50046219 AQT(ph)PHEDGGPQPHR ddPTM_HeLa_A485_30min_R1 2 AQTPHEDGGPQPHR 14 0 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 AQT(1)PHEDGGPQPHR;AQT(1)PHEDGGPQPHR ; 111.77 0.00031208 1976810000 629510 704310 550480 636240 535180 595510 669440 620320 512430 732160 TRUE FALSE FALSE 769542.3277 786672.9278 754125.4594 670996.1802 481895.6001 626689.9828 526408.6752 468185.5474 615270.0007 549645.9864 1.400069039 1.431235645 1.372020315 1.220778823 0.876738141 1.140170215 0.957723131 0.851794717 1.119393238 1 19.06814319 -5.501691138 2.966761161 0.989461614 1.40363093 0.813254885 0.088387284 0.103426336 1.839027882 0.026365213 0.038844411 3.15E-06 5.501691138 0.414169316 AQT(ph)PHEDGGPQPHR ddPTM_HeLa_A486_30min_R1 2 AQTPHEDGGPQPHR 14 0 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 AQT(1)PHEDGGPQPHR;AQT(1)PHEDGGPQPHR ; 118.96 0.0001379 809450000 628230 645180 423250 180785 460690 586880 520130 472850 543140 703000 TRUE FALSE FALSE 584194.3212 594053.5871 587143.735 420876.6164 402905.9644 514476.7126 389987.9726 365192.3772 590219.8125 526964.2242 1.108603382 1.127312937 1.114200373 0.798681575 0.764579351 0.976302923 0.740065368 0.693011708 1.120037728 1 19.00734549 -5.253506069 23.88964581 0.85216647 1.117766352 0.442444214 0.125553366 276.1945174 831702.287 0.033374109 0.056413403 5.58E-06 5.253506069 0.265599882 AQT(ph)PPGPS(ph)LSGSKSPCPQEK ddPTM_HeLa_A485_30min_R1 1 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AQT(0.999)PPGPS(0.444)LS(0.29)GS(0.236)KS(0.031)PCPQEK 70.091 0.0013439 0 286690 206050 119280 577190 362760 315710 497130 484460 198950 674010 TRUE FALSE FALSE 350463.2014 230145.7551 163406.6357 608720.4282 326642.3407 332240.0874 390914.1143 365645.4254 238877.4401 505991.7112 0.692626368 0.454840959 0.322943305 1.203024505 0.645548797 0.656611719 0.772570194 0.722631255 0.472097536 1 18.94875423 AQT(ph)PPGPSLSGS(ph)KSPCPQEK ddPTM_HeLa_A485_30min_R1 1 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AQT(1)PPGPS(0.007)LS(0.08)GS(0.681)KS(0.232)PCPQEK 109.53 2.51E-05 633040000 1218400 761540 521470 2171500 1363800 1181800 2161300 1750900 812600 2770200 TRUE FALSE FALSE 1489428.877 850595.4785 714383.4532 2290123.546 1228015.283 1243677.221 1699520.599 1321489.03 975681.3664 2079640.122 0.71619549 0.4090109 0.343513017 1.101211466 0.59049413 0.59802521 0.817218605 0.635441207 0.469158753 1 20.98790246 -11.48996384 2.251405853 5.649448283 0.633403561 0.224040107 0.205900143 21010778.17 660544.0132 503749043.1 0.054243542 3.24E-12 11.48996384 -5.016044721 AQT(ph)PPGPSLSGSK ddPTM_HeLa_A485_30min_R1 2 AQTPPGPSLSGSK 13 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQT(0.908)PPGPS(0.084)LS(0.008)GSK;AQT(0.999)PPGPS(0.001)LSGSK ; 80.905 0.023271 4894200000 1029130 751590 612410 1385320 1080890 912050 1341910 1090700 895390 1864320 TRUE FALSE FALSE 1258056.418 839481.9125 838965.9435 1460996.524 973272.7964 959803.5277 1055199.966 823204.1148 1075086.56 1399579.334 0.898881819 0.599810166 0.599441506 1.043882607 0.695403806 0.685780008 0.753940802 0.588179673 0.768149782 1 20.41656184 -8.033157085 23.32417217 1.000000004 0.729079676 0.254650361 0.135989017 2796.983342 1967521.303 0.130371352 0.033661738 9.26E-09 8.033157085 -0.270920328 AQT(ph)PPGPSLSGSK ddPTM_HeLa_A486_30min_R1 4 AQTPPGPSLSGSK 13 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQT(0.955)PPGPS(0.045)LSGSK;AQT(1)PPGPSLSGSK;AQT(0.997)PPGPS(0.003)LSGSK;AQT(0.996)PPGPS(0.004)LSGSK ;;; 184.8 1.64E-16 9002770000 2115800 2356110 1090590 759770 1882470 2522130 2564120 2599910 1733810 2726060 TRUE FALSE FALSE 1967493.346 2169403.263 1512895.655 1768782.957 1646353.059 2210975.244 1922550.056 2007967.249 1884098.047 2043436.832 0.962835413 1.061644397 0.740368203 0.865592187 0.805678469 1.081988544 0.940841442 0.982642192 0.92202412 1 20.96256622 -6.254512689 24.9722872 0.981623283 0.887553383 0.230284081 0.089694757 948.7436693 3420438.147 0.031452875 0.030781661 5.57E-07 6.254512689 -0.094069901 AQT(ph)PPGPSLSGSKS(ph)PCPQEK ddPTM_HeLa_A485_30min_R1 2 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AQT(0.989)PPGPS(0.026)LS(0.336)GS(0.255)KS(0.393)PCPQEK;AQT(0.965)PPGPS(0.026)LS(0.011)GS(0.03)KS(0.967)PCPQEK ; 98.491 0.0002387 21202000000 1561360 975780 744730 2912040 1790960 1536710 2803320 2371420 1218810 3656400 TRUE FALSE FALSE 1908679.145 1089888.983 1020236.618 3071117.372 1612645.734 1617169.759 2204367.781 1789825.527 1463413.987 2744926.771 0.695347929 0.397055759 0.371680814 1.11883399 0.587500458 0.589148598 0.803069796 0.652048552 0.533134072 1 21.38833623 -14 0.222526512 2.78673337 0.597998134 0.213924226 0.203024573 258.4099247 2.587148996 208.2826835 0.392503671 1.00E-14 14 -2.188735236 AQT(ph)PPGPSLSGSKS(ph)PCPQEK ddPTM_HeLa_A486_30min_R1 4 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AQT(0.985)PPGPS(0.049)LS(0.023)GS(0.309)KS(0.635)PCPQEK;AQT(1)PPGPS(0.005)LS(0.017)GS(0.4)KS(0.578)PCPQEK;AQT(0.999)PPGPS(0.001)LS(0.001)GS(0.007)KS(0.991)PCPQEK;AQT(0.999)PPGPS(0.001)LS(0.004)GS(0.033)KS(0.963)PCPQEK ;;; 99.614 0.00019997 13306330000 3187180 3112490 1128330 2138630 2747610 4229630 5492800 5272700 2487930 5664900 TRUE FALSE FALSE 2963775.141 2865844.957 1565249.594 4978838.72 2402979.133 3707821.254 4118443.343 4072221.312 2703585.776 4246372.168 0.697954636 0.674892554 0.368608669 1.172492312 0.565889903 0.873173878 0.969873384 0.95898832 0.636681306 1 22.01779939 -5.251208355 24.99146069 0.870800956 0.589926038 0.358153363 0.184651503 819.9058683 2002791.502 0.048669455 0.083112018 5.61E-06 5.251208355 -0.280874917 AQT(ph)PPISSLPTSPSDEVGRR ddPTM_HeLa_A485_30min_R1 1 AQTPPISSLPTSPSDEVGRR 20 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 AQT(0.778)PPIS(0.111)S(0.111)LPTSPSDEVGRR 58.332 0.019414 444390000 107190 126920 107610 169510 136690 134300 156740 176020 124130 247120 TRUE FALSE FALSE 131034.0457 141762.1899 147419.417 178769.9021 123080.6637 141331.7403 123251.2186 132850.819 149041.7524 185517.5319 0.706316241 0.764144437 0.794638736 0.963628075 0.663444918 0.761824173 0.664364264 0.716109241 0.803383653 1 17.50119601 -8.085445056 7.368839588 0.999999321 0.757277952 0.450899724 0.081101787 1.805876671 155.614875 0.081593879 0.021117341 8.21E-09 8.085445056 -0.242721368 AQT(ph)PPISSLPTSPSDEVGRR ddPTM_HeLa_A486_30min_R1 1 AQTPPISSLPTSPSDEVGRR 20 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 AQT(0.799)PPIS(0.1)S(0.1)LPTSPSDEVGRR 75.524 0.0030389 405820000 149430 156290 117550 82480 165740 184350 269270 221590 144280 253740 TRUE FALSE FALSE 138955.7287 143905.0112 163068.5081 192017.6083 144951.3437 161606.7713 201895.798 171138.7943 156786.3066 190201.8524 0.730569797 0.756591008 0.857344479 1.009546468 0.762092177 0.849659292 1.061481765 0.899774593 0.82431535 1 17.53717177 -4.82758519 3.408346932 0.909533359 0.738216395 0.38084268 0.086293192 0.248353136 5.719603521 0.023615259 0.059892897 1.49E-05 4.82758519 -0.171316963 AQTAPTKT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 AQTAPTKTSPR 11 1 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 AQTAPT(0.016)KT(0.644)S(0.34)PR 67.275 0.018389 3204500000 1682500 1738200 1202900 779870 1876000 1632400 2114400 2084400 1234500 1895800 TRUE FALSE FALSE 1564565.438 1600458.702 1668695.095 1815576.772 1640694.587 1431011.085 1585354.756 1609827.622 1341507.454 1421079.34 1.100969801 1.126227548 1.174244848 1.277604086 1.154541158 1.006988874 1.115599046 1.132820369 0.944006021 1 20.43855567 -6.161369679 6.183874252 1.053245609 1.172419997 0.463587307 0.067490699 0.24884855 12.91890291 0.023266923 0.023287796 6.90E-07 6.161369679 0.119174388 AQTAPTKTS(ph)PR ddPTM_HeLa_A485_30min_R1 6 AQTAPTKTSPR 11 1 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 AQT(0.002)APT(0.069)KT(0.069)S(0.859)PR;AQTAPTKT(0.01)S(0.99)PR;AQT(0.005)APT(0.163)KT(0.273)S(0.56)PR;AQT(0.008)APT(0.09)KT(0.16)S(0.742)PR;AQT(0.002)APT(0.007)KT(0.061)S(0.93)PR;AQT(0.086)APT(0.13)KT(0.354)S(0.431)PR ;;;;; 106.3 0.00034167 12245290000 4542910 5396570 4417970 5047500 6530870 5789880 7414020 8714000 5294290 7122000 TRUE FALSE FALSE 5553464.657 6027651.918 6052360.95 5323232.144 5880633.652 6093029.164 5829954.06 6576877.837 6356805.441 5346616.471 1.03868768 1.127376903 1.131998336 0.995626332 1.099879463 1.139604682 1.090400647 1.23010092 1.188939861 1 22.35019476 -6.174617888 4.029161642 1.14198693 1.078212299 0.115916259 0.068285009 0.452384942 13.54527593 0.023331191 0.023158077 6.69E-07 6.174617888 -0.063774631 AQTAPTKTS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AQTAPTKTSPR 11 1 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 AQTAPT(0.003)KT(0.06)S(0.937)PR;AQTAPTKT(0.003)S(0.997)PR ; 73.386 0.0055412 6194500000 2198990 2202500 1601880 970430 2466130 2191800 2804300 2684850 1623400 2491140 TRUE FALSE FALSE 2044852.157 2027965.879 2222170.836 2259210.083 2156804.98 1921398.001 2102634.479 2073568.265 1764117.619 1867342.329 1.095060142 1.086017195 1.190017921 1.209853195 1.155013168 1.028947917 1.126003757 1.110438205 0.944721057 1 20.832555 -7.712071203 6.270142129 0.972537423 1.127400791 0.59319623 0.050653495 0.129604996 11.44334846 0.039969505 0.014192311 1.94E-08 7.712071203 0.154863368 AQTLPT(ph)SVVTITSESSPGKR ddPTM_HeLa_A486_30min_R1 1 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQT(0.084)LPT(0.409)S(0.409)VVT(0.053)IT(0.006)S(0.006)ES(0.024)S(0.009)PGKR 49.593 0.033408 875300000 23727 26188 19955 15933 30122 27247 36557 35215 19026 28023 TRUE FALSE FALSE 22063.85983 24112.7675 27682.11041 37092.82921 26343.81788 23885.54217 27410.05194 27197.31324 20675.189 21005.8584 1.050366969 1.147906791 1.317828098 1.765832584 1.254117655 1.137089554 1.304876545 1.294748956 0.98425823 1 14.35850412 -7.760890086 24.56375549 0.992128949 1.291531782 0.291764298 0.181660649 15.31854467 685381.1383 0.152806831 0.049718436 1.73E-08 7.760890086 0.299402833 AQTLPTS(ph)VVTITSESSPGKR ddPTM_HeLa_A486_30min_R1 1 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQT(0.023)LPT(0.329)S(0.649)VVTITSESSPGKR 211.64 4.52E-27 614360000 228280 270580 200050 153210 337790 329450 434160 405730 223500 307110 TRUE FALSE FALSE 212278.7508 249138.2554 277514.7175 356680.6228 295421.2284 288805.8086 325528.5759 313354.136 242873.16 230207.657 0.92211855 1.082232705 1.205497337 1.549386443 1.283281504 1.254544755 1.414064936 1.361180336 1.055017731 1 17.81257629 -4.649974893 2.422953774 1.297622714 0.940748848 0.335374567 0.153452723 0.315603025 3.467413969 0.040456142 0.165979185 2.24E-05 4.649974893 -0.356873867 AQTLPTSVVTITSES(ph)SPGKR ddPTM_HeLa_A486_30min_R1 1 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQTLPTSVVTITS(0.005)ES(0.76)S(0.235)PGKR 195.97 2.41E-20 13061000000 99620 94384 57077 44388 94320 103480 126520 120380 73509 135750 TRUE FALSE FALSE 92637.15244 86904.6681 79178.74298 103337.5072 82489.5061 90713.68971 94863.35781 92972.10188 79880.81931 101757.3164 0.910373383 0.854038522 0.778113513 1.015529014 0.810649386 0.891470932 0.932250979 0.913665033 0.78501303 1 16.634773 -10.53134228 3.216571332 1.003757356 0.878500846 0.220859089 0.069358642 43278958.23 64112001.13 1466232.262 0.017116222 2.94E-11 10.53134228 -0.12525651 AQTLPTSVVTITSESS(ph)PGKR ddPTM_HeLa_A485_30min_R1 4 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQTLPTSVVTITSES(0.024)S(0.976)PGKR;AQTLPTSVVTITSES(0.236)S(0.764)PGKR;AQTLPTSVVTITSES(0.055)S(0.945)PGKR;AQTLPTSVVTITS(0.01)ES(0.287)S(0.702)PGKR ;;; 312.62 5.76E-102 36240510000 4394130 4156690 3379350 5541140 5266350 4610200 6483420 6766340 3805420 7750160 TRUE FALSE FALSE 5371589.059 4642778.737 4629512.191 5843838.447 4742013.703 4851582.943 5098184.352 5106884.506 4569132.889 5818187.743 0.923240929 0.797976783 0.795696598 1.00440871 0.815032775 0.833864969 0.876249543 0.877744881 0.785318916 1 22.47213842 -10.82746757 2.551146568 1.051969385 0.856752252 0.307890685 0.064492963 27106459.91 17196656.96 8632458.369 0.01666512 1.49E-11 10.82746757 -0.195217133 AQTLPTSVVTITSESS(ph)PGKR ddPTM_HeLa_A486_30min_R1 6 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQTLPTSVVTITS(0.051)ES(0.153)S(0.796)PGKR;AQTLPTSVVTITSES(0.071)S(0.929)PGKR;AQTLPTSVVTITSES(0.196)S(0.804)PGKR;AQTLPTSVVTITSES(0.059)S(0.941)PGKR;AQTLPTSVVTITSES(0.376)S(0.624)PGKR;AQTLPTSVVTITS(0.002)ES(0.172)S(0.826)PGKR ;;;;; 264.87 3.30E-59 46156300000 6798940 6457520 3990047 3146700 6060470 6913950 8860890 8199040 5415450 9405460 TRUE FALSE FALSE 6322369.416 5945802.597 5535100.056 7325676.625 5300309.341 6060977.145 6643801.601 6332297.576 5884865.566 7050271.597 0.896755441 0.843343766 0.78509033 1.039063038 0.751787966 0.859679952 0.942346903 0.898163637 0.834700548 1 22.7492474 -13.9999999 0.296142004 2.027172702 0.865913978 0.196095748 0.076707993 433.8108586 4.052086054 276.1336799 0.077617761 1.00E-14 13.9999999 -1.161258724 AQTNDS(ph)DS(ph)DTESKR ddPTM_HeLa_A485_30min_R1 1 AQTNDSDSDTESKR 14 1 O14647;O14647-2;A0A1B0GTM9;A0A1B0GTU9 O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 2 0 AQT(0.036)NDS(0.964)DS(0.984)DT(0.015)ES(0.001)KR 57.009 0.016395 349800000 457310 436210 273110 783070 446550 483070 652810 712700 435520 1075500 TRUE FALSE FALSE 559037.0318 487220.965 374144.7541 825847.1313 402089.9141 508362.7982 513331.8105 537909.2075 522924.8692 807397.6431 0.692393688 0.603446108 0.463395896 1.02285056 0.498007292 0.629631264 0.635785619 0.666225883 0.647667074 1 19.62291985 -9.661220982 1.240489885 1.007646265 0.649564284 0.351890815 0.142057739 162.1365513 112.7392478 6.199991398 0.039575394 2.18E-10 9.661220982 -0.358081981 AQTPPGPSLSGSKS(ph)PCPQEK ddPTM_HeLa_A485_30min_R1 3 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQTPPGPSLS(0.001)GS(0.047)KS(0.951)PCPQEK;AQTPPGPSLS(0.001)GS(0.066)KS(0.934)PCPQEK;AQTPPGPSLSGS(0.001)KS(0.999)PCPQEK ;; 198.18 1.70E-26 11547900000 3827860 3173050 2328670 5861440 4700250 3985880 6938960 6466740 3314250 7700000 TRUE FALSE FALSE 4679354.251 3544110.596 3190141.937 6181635.625 4232276.606 4194574.513 5456394.51 4880761.876 3979389.575 5780531.708 0.809502393 0.613111522 0.551876903 1.069388758 0.732160434 0.725638181 0.943926058 0.844344798 0.688412377 1 22.46277077 -11.97265213 0.033639279 2.013334915 5.29E-06 0.188211691 0.143699481 1345.78343 4.94488353 208.1813172 103.2853457 1.06E-12 11.97265213 -2.013329627 AQTPPGPSLSGSKS(ph)PCPQEK ddPTM_HeLa_A486_30min_R1 4 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQTPPGPS(0.001)LS(0.003)GS(0.041)KS(0.955)PCPQEK;AQTPPGPS(0.002)LS(0.001)GS(0.034)KS(0.964)PCPQEK;AQTPPGPSLSGS(0.001)KS(0.999)PCPQEK;AQTPPGPS(0.021)LS(0.009)GS(0.026)KS(0.943)PCPQEK ;;; 262.97 3.59E-59 7433020000 5107640 5014290 2645180 2825820 5276710 6425490 8140550 7651970 3985580 8343900 TRUE FALSE FALSE 4749620.812 4616939.399 3669464.536 6578651.769 4614855.828 5632778.373 6103698.288 5909783.472 4331053.283 6254533.13 0.759388545 0.738174905 0.5866888 1.051821396 0.737841775 0.90059134 0.975883917 0.944880033 0.692466279 1 22.57647077 -5.253306991 24.94863744 0.894568805 0.699093172 0.408598849 0.113238789 616.5670872 1891506.708 0.030053665 0.050932752 5.58E-06 5.253306991 -0.195475633 AQTPPIS(ph)SLPTSPSDEVGRR ddPTM_HeLa_A485_30min_R1 1 AQTPPISSLPTSPSDEVGRR 20 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 AQT(0.095)PPIS(0.746)S(0.158)LPTSPSDEVGRR 63.979 0.0025392 0 88342 111460 104220 174080 156330 122470 146740 158350 100090 187810 TRUE FALSE FALSE 107993.3731 124494.2774 142775.315 183589.5496 140765.2363 128882.3398 115387.8002 119514.4142 120177.1449 140992.4234 0.765951606 0.882985585 1.012645301 1.302123513 0.998388657 0.914108267 0.81839717 0.847665508 0.852365978 1 17.10525811 -6.392478649 3.831372547 0.867153797 1.004168818 0.131422978 0.134612663 0.472137737 12.1778243 0.05463713 0.047328573 4.05E-07 6.392478649 0.137015021 AQTSTDAPTSAPSAPPS(ph)TPTPSAGKR ddPTM_HeLa_A485_30min_R1 1 AQTSTDAPTSAPSAPPSTPTPSAGKR 26 1 Q8IWZ8;B4DVK3;V9GZ08;Q8IWZ8-2 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AQTSTDAPTSAPS(0.001)APPS(0.597)T(0.4)PT(0.002)PS(0.001)AGKR 159.01 2.25E-10 82615000 37650 51248 48213 34534 68359 57247 64975 68900 43613 49797 TRUE FALSE FALSE 46025.11261 57241.0078 66048.99501 36420.50498 61552.93794 60244.3644 51092.56045 52002.16697 52365.72906 37383.52435 1.231160342 1.531182755 1.766794227 0.974239471 1.646525816 1.611521799 1.366713314 1.391045063 1.400770258 1 15.19011497 -8.793049742 0.848345951 0.994284162 1.456018612 0.275748342 0.213197863 4.790414445 4.089461806 0.277227967 0.069468608 1.61E-09 8.793049742 0.46173445 AQVARPGGDTIFGK ddPTM_HeLa_A485_30min_R1 1 AQVARPGGDTIFGK 14 1 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 84.173 0.0078411 32819000 13131 13183 11571 12732 18345 17193 21925 22666 14466 19127 FALSE FALSE TRUE 16051.94565 14724.63717 15851.59441 13427.51692 16518.50739 18093.19889 17240.54464 17107.12796 17369.19351 14358.99091 1.117902069 1.025464621 1.103949053 0.935129565 1.150394724 1.260060614 1.200679404 1.191387896 1.209638868 1 13.80966675 -5.98237679 24.63200877 1.188212394 1.04764206 0.36226988 0.079037031 188.735465 263794.3044 0.022963825 0.026033075 1.04E-06 5.98237679 -0.140570334 AQVARPGGDTIFGK(ac)IIR ddPTM_HeLa_A485_30min_R1 2 AQVARPGGDTIFGKIIR 17 2 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 1 ; AQVARPGGDTIFGK(1)IIR;AQVARPGGDTIFGK(1)IIR 199.76 1.04E-17 111244000 45897 58195 69490 52513 76262 67032 75439 76122 55120 70243 FALSE TRUE FALSE 56106.62931 65000.39902 95197.24272 55381.65222 68669.08751 70541.69187 59320.84137 57452.96015 66182.07841 52732.71283 1.06398147 1.232639012 1.80527869 1.050233323 1.302210408 1.337721655 1.124934375 1.089512696 1.25504786 1 15.6864106 -6.76739307 24.36769882 1.124833056 1.307570691 0.158992869 0.203374234 210.6927627 862324.642 0.08440069 0.058649805 1.71E-07 6.76739307 0.182737634 AQVARPGGDTIFGK(ac)IIR ddPTM_HeLa_A486_30min_R1 2 AQVARPGGDTIFGKIIR 17 2 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 1 ; AQVARPGGDTIFGK(1)IIR;AQVARPGGDTIFGK(1)IIR 225.01 1.45E-24 135152000 60128 77188 66641 25004 98845 70415 81543 90539 69773 84035 FALSE TRUE FALSE 55913.3377 71071.34177 92446.17991 58210.57563 86446.93841 61727.91323 61140.07893 69925.24615 75820.97982 62992.08902 0.887624757 1.128258213 1.467583967 0.92409343 1.372345952 0.979931197 0.970599322 1.110063934 1.203658761 1 15.94288304 AQVIYTR ddPTM_HeLa_A485_30min_R1 2 AQVIYTR 7 0 P62851 P62851 RPS25 40S ribosomal protein S25 0 0 ; ; 119.17 0.010907 60966000 53972 57512 64361 55069 71182 69047 67877 75946 62223 77371 FALSE FALSE TRUE 65977.8852 64237.52811 88170.81218 58077.28003 64094.87014 72662.19415 53374.52445 57320.12442 74710.58536 58083.83361 1.135907896 1.105945047 1.5179923 0.99988717 1.103488977 1.250988264 0.918922205 0.986851605 1.28625438 1 15.82584906 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(ph)SPER ddPTM_HeLa_A485_30min_R1 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.559)S(0.441)PER 91.869 0.00012434 394120000 98284 163540 142840 89251 167180 138450 144910 147860 120790 161960 TRUE FALSE FALSE 120146.9367 182664.5804 195682.4601 94126.55613 150534.9722 145699.0279 113948.7947 111597.1032 145031.445 121586.3527 0.988161369 1.502344436 1.609411384 0.774153958 1.238091027 1.198317284 0.937184085 0.917842346 1.192826677 1 16.89162178 -5.257164929 24.99220904 1.044445038 1.380209586 0.358455266 0.201720257 399.8154811 2337665.523 0.05540295 0.091792702 5.53E-06 5.257164929 0.335764547 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(ph)SPER ddPTM_HeLa_A486_30min_R1 3 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.571)S(0.429)PER;AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.621)S(0.379)PER;AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.563)S(0.437)PER ;; 156.29 3.44E-10 2325010000 720400 867250 880700 247736 1119900 820210 889210 995310 855680 758280 TRUE FALSE FALSE 669903.6801 798525.9515 1221730.626 576741.9279 979431.6993 719020.8295 666720.2529 768699.6405 929851.0314 568401.7524 1.17857427 1.404861875 2.149413897 1.014673029 1.723132793 1.264987003 1.172973605 1.352387879 1.635904582 1 19.11655148 -6.325333821 24.99774553 1.300257363 1.498941618 0.093754771 0.322855171 587.8356511 229979.6832 0.11212767 0.098887315 4.73E-07 6.325333821 0.198684255 AQVLATIHGHAGAFPAAGDAGEGAPGGGSS(ph)PER ddPTM_HeLa_A485_30min_R1 3 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.29)S(0.71)PER;AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.186)S(0.814)PER;AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.027)S(0.973)PER ;; 168.01 1.40E-14 2601460000 278806 379773 427945 283924 461460 373726 424430 480510 370670 416843 TRUE FALSE FALSE 340825.4328 424184.1488 586259.6638 299434.0492 415515.4221 393293.7155 333747.0632 362664.1691 445060.069 312931.7115 1.089136768 1.355516661 1.873442806 0.956867068 1.327815005 1.256803644 1.066517233 1.158924314 1.422227446 1 18.25548834 -5.308119306 24.99999531 1.182396925 1.430983344 0.231959179 0.223749422 635.3382351 340261.6812 0.062860297 0.093237208 4.92E-06 5.308119306 0.248586419 AQVLATIHGHAGAFPAAGDAGEGAPGGGSS(ph)PER ddPTM_HeLa_A486_30min_R1 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.008)S(0.992)PER 162 2.20E-14 869580000 130370 140640 128860 45418 160410 121300 158090 173330 125340 127080 TRUE FALSE FALSE 121231.7362 129495.1742 178758.043 105735.3993 140289.882 106335.2393 118534.2099 133866.5428 136204.5721 95258.34085 1.272662689 1.359410347 1.876560534 1.109985733 1.47273069 1.116282714 1.244344682 1.405299962 1.429844053 1 16.5395578 AQVPGPLT(ph)PEMEAR ddPTM_HeLa_A485_30min_R1 2 AQVPGPLTPEMEAR 14 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 AQVPGPLT(1)PEMEAR;AQVPGPLT(1)PEMEAR ; 165.02 3.06E-11 739460000 229038 343290 371330 224455 416780 345120 352040 391080 320982 349460 TRUE FALSE FALSE 279986.7129 383434.7793 508700.4193 236716.4083 375283.9198 363189.9495 276823.7781 295167.0168 385400.1432 262346.0533 1.067241948 1.461561073 1.939043538 0.902305963 1.430491959 1.384392656 1.055185602 1.125105612 1.469052567 1 18.00111156 -6.08599578 0.967473048 1.185808905 1.419627501 0.081334832 0.28389553 1.439434914 2.905744519 0.155885551 0.170461057 8.20E-07 6.08599578 0.233818596 AQVPGPLT(ph)PEMEAR ddPTM_HeLa_A486_30min_R1 2 AQVPGPLTPEMEAR 14 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 AQVPGPLT(1)PEMEAR;AQVPGPLT(1)PEMEAR ; 182.15 1.12E-16 409750000 420870 543840 488330 128062 619520 409550 490200 529580 420990 536690 TRUE FALSE FALSE 391369.1864 500744.1378 677424.4539 298134.8079 541814.0248 359023.885 367546.7752 409006.1947 457481.7522 402299.3307 0.972830816 1.244705371 1.683881633 0.741077067 1.346793254 0.892429735 0.913615179 1.016671328 1.13716757 1 18.61790981 -5.276791952 24.99956883 1.013032183 1.294895942 0.272312314 0.21975724 1074.011129 1748878.329 0.061148176 0.091087663 5.29E-06 5.276791952 0.281863759 AQVS(ph)PQS ddPTM_HeLa_A485_30min_R1 2 AQVSPQS 7 0 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AQVS(1)PQS;AQVS(0.978)PQS(0.022) ; 86.344 0.0076504 545380000 866780 1154990 1167000 1031920 1367400 1095720 1213640 1384760 1151280 1372550 TRUE FALSE FALSE 1059592.221 1290056.033 1598721.863 1088291.177 1231256.855 1153090.205 954335.8995 1045145.439 1382331.336 1030398.545 1.028332412 1.251997142 1.551556794 1.056184699 1.194932641 1.119072043 0.926181335 1.014311835 1.341550163 1 19.97477103 AQVS(ph)PQS ddPTM_HeLa_A486_30min_R1 1 AQVSPQS 7 0 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AQVS(0.999)PQS(0.001) 67.93 0.022888 524950000 679410 857940 843650 297170 1036800 814330 886900 827930 790120 826120 TRUE FALSE FALSE 631786.8675 789953.7098 1170333.874 691826.7781 906754.8762 713866.2441 664988.2393 639428.4126 858608.2378 619254.1749 1.020238366 1.275653426 1.889908734 1.117193563 1.464269299 1.152783902 1.073853462 1.032578283 1.386519902 1 19.24017216 -6.354019321 6.302286873 1.125065301 1.365351953 0.180538136 0.238580833 0.428482652 24.26252789 0.085375733 0.075107774 4.43E-07 6.354019321 0.240286652 AQYDELAR ddPTM_HeLa_A485_30min_R1 2 AQYDELAR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 175.12 4.37E-06 121504000 129904 184766 192966 146741 223881 178382 202138 225864 181094 203224 FALSE FALSE TRUE 158800.6966 206372.7764 264352.1534 154757.0893 201590.6215 187721.8057 158949.565 170470.4999 217437.9047 152563.9969 1.040879237 1.352696447 1.732729601 1.014374901 1.321351208 1.230446302 1.041855013 1.117370437 1.425224228 1 17.21905502 AQYSLPGILHFLQHEWAR ddPTM_HeLa_A485_30min_R1 2 AQYSLPGILHFLQHEWAR 18 0 O43815-2;O43815 O43815-2 STRN Striatin 0 0 ; ; 125.12 1.05E-06 15912000 15254.6 18171.8 21162.8 10481.4 17576.9 19552.8 24951 26944 11590.2 17075.7 FALSE FALSE TRUE 18647.93314 20296.83394 28991.80038 11053.97234 15826.88212 20576.55437 19620.01502 20335.94175 13916.24683 12819.04224 1.454705647 1.583334663 2.261619848 0.862308754 1.234638424 1.60515536 1.530536732 1.586385423 1.085591775 1 13.64600086 -11.79114846 0.107364748 3.65E-10 1.842100656 0.192505986 0.341470208 170.1411639 2.063581705 45.67452347 5.713550653 1.62E-12 11.79114846 1.842100656 AQYSLPGILHFLQHEWAR ddPTM_HeLa_A486_30min_R1 2 AQYSLPGILHFLQHEWAR 18 0 O43815-2;O43815 O43815-2 STRN Striatin 0 0 ; ; 103.85 8.36E-05 17277100 13734.9 20819 20187.8 5766.4 24679 18905.2 21354.5 21371.3 19209.9 20335.9 FALSE FALSE TRUE 12772.15444 19169.22662 28005.05681 13424.47062 21583.5297 16572.86864 16011.37824 16505.52152 20875.0296 15243.65828 0.837866751 1.257521408 1.837161153 0.880659378 1.415902227 1.087197596 1.050363236 1.082779555 1.369423876 1 13.89592155 -6.311634062 24.8622159 1.118902181 1.259037884 0.049793098 0.276278331 1177.489203 583225.145 0.097419132 0.085915593 4.88E-07 6.311634062 0.140135704 AQYSWTINGK ddPTM_HeLa_A485_30min_R1 1 AQYSWTINGK 10 0 M0R2Y7;M0R2A2;M0R0B3;Q00888-3;Q00888-2;Q00888 M0R2Y7 PSG4 Pregnancy-specific beta-1-glycoprotein 4 0 0 99.139 0.020265 25799000 42884 31623 44660 70625 74858 43526 64426 51435 51257 104630 FALSE FALSE TRUE 52423.39785 35321.03477 61181.59246 74483.06492 67404.87468 45804.95406 50660.85879 38820.4856 61543.80974 78547.66657 0.667408723 0.449676436 0.778910375 0.948253057 0.858139746 0.583148501 0.644969622 0.494228375 0.783521808 1 16.2612808 -4.775966912 24.99636728 0.742937653 0.558542555 0.204746827 0.156568975 366.4670709 630552.5012 0.043396564 0.090972475 1.68E-05 4.775966912 -0.184395098 ARAHS(ph)HEEASRPAATSTR ddPTM_HeLa_A485_30min_R1 4 ARAHSHEEASRPAATSTR 18 2 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 ARAHS(1)HEEASRPAATSTR;ARAHS(1)HEEASRPAATSTR;ARAHS(1)HEEASRPAATSTR;ARAHS(1)HEEASRPAATSTR ;;; 152.66 9.51E-09 366762000 13259.8 45196.6 29959.6 12642.86 32547.1 45184.4 44274.8 68586 26683.1 21341.4 TRUE FALSE FALSE 16209.39676 50481.94921 41042.90276 13333.50743 29306.59644 47550.18532 34815.12729 51765.17596 32038.15342 16021.38174 1.011735257 3.150911078 2.561757995 0.832232054 1.829217787 2.967920376 2.173041493 3.231005715 1.999712256 1 13.96771096 -6.192636306 24.99786477 2.407453025 1.927914181 0.039393939 0.845080645 518.0888002 188233.3706 0.27699997 0.277000006 6.42E-07 6.192636306 -0.479538845 ARAHS(ph)HEEASRPAATSTR ddPTM_HeLa_A486_30min_R1 2 ARAHSHEEASRPAATSTR 18 2 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 ARAHS(1)HEEASRPAATSTR;ARAHS(1)HEEASRPAATSTR ; 147.35 1.65E-08 170730000 13566.7 10414.17 8654.5 2579.4 20322.7 6203.44 11004.04 14240.7 8448.6 12142.8 TRUE FALSE FALSE 12615.74439 9588.913241 12005.75418 6004.973556 17773.63746 5438.122645 8250.712803 10998.40348 9180.93145 9102.163844 1.386015963 1.053476229 1.319000007 0.65973033 1.952682655 0.597453829 0.906456195 1.208328445 1.008653723 1 13.15199384 ARAPS(ph)PGDYK ddPTM_HeLa_A485_30min_R1 4 ARAPSPGDYK 10 1 P55198 P55198 MLLT6 Protein AF-17 1 0 ARAPS(0.953)PGDY(0.047)K;ARAPS(0.976)PGDY(0.024)K;ARAPS(0.864)PGDY(0.136)K;ARAPS(0.98)PGDY(0.02)K ;;; 84.173 0.001523 561580000 990440 1054400 933350 1391710 1247380 1190340 1536100 1302750 1043880 1851080 TRUE FALSE FALSE 1210759.961 1177702.908 1278635.005 1467735.593 1123186.467 1252664.362 1207899.686 983248.5199 1253377.141 1389639.823 0.871276097 0.847487881 0.92011972 1.05619857 0.808257254 0.901430962 0.869217812 0.707556378 0.901943885 1 20.40627957 ARAPS(ph)PGDYK ddPTM_HeLa_A486_30min_R1 4 ARAPSPGDYK 10 1 P55198 P55198 MLLT6 Protein AF-17 1 0 ARAPS(0.91)PGDY(0.09)K;ARAPS(0.827)PGDY(0.173)K;ARAPS(0.985)PGDY(0.015)K;ARAPS(0.969)PGDY(0.031)K ;;; 83.633 0.0025892 1119760000 1781520 1906540 1117140 750441 1760790 1884170 2231030 2098850 1472520 2529780 TRUE FALSE FALSE 1656644.648 1755458.827 1549726.526 1747064.573 1539935.299 1651720.262 1672802.697 1620987.673 1600159.219 1896306.622 0.873616444 0.9257252 0.817234148 0.921298567 0.812070834 0.871019614 0.882137244 0.854813063 0.843829368 1 20.85476083 -10.25051962 5.356699259 1.000012823 0.86733918 0.553511494 0.035870872 5.18E-06 7.25E-07 0.032747242 0.007941605 5.62E-11 10.25051962 -0.132673643 ARAS(ph)PSVTCK ddPTM_HeLa_A486_30min_R1 2 ARASPSVTCK 10 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ARAS(0.995)PS(0.005)VTCK;ARAS(0.996)PS(0.004)VTCK ; 63.727 0.011057 297130000 421590 464300 349590 169620 521210 437450 467380 461720 369840 469780 TRUE FALSE FALSE 392038.7181 427507.177 484960.6103 394883.9321 455834.9817 383481.8667 350436.5806 356596.4353 401898.029 352144.0302 1.113290825 1.21401228 1.377165502 1.121370514 1.294456082 1.088991531 0.995151275 1.012643704 1.141288775 1 18.4258061 -6.427703242 5.000704559 1.038547017 1.22555032 0.546581728 0.08132753 0.174326928 6.994956212 0.029108344 0.025287543 3.74E-07 6.427703242 0.187003304 ARDSGREDEPGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ARDSGREDEPGSPR 14 2 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 1 0 ARDS(0.027)GREDEPGS(0.973)PR;ARDSGREDEPGS(1)PR ; 111.65 0.00017585 1537320000 480940 1057630 927010 439140 1192870 1099700 1250120 1704690 777270 640380 TRUE FALSE FALSE 587923.4438 1181310.628 1269949.575 463129.1062 1074103.674 1157278.592 983021.6495 1286612.105 933260.9595 480745.0513 1.222942269 2.45724969 2.641627972 0.963356991 2.23424801 2.407260539 2.04478787 2.676287777 1.941280429 1 18.87491248 AREEK(ac)AR ddPTM_HeLa_A486_30min_R1 1 AREEKAR 7 2 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 0 1 AREEK(1)AR 86.472 0.020543 102370000 59682 66516 77729 25313 80098 74268 76257 67709 77749 89243 FALSE TRUE FALSE 55498.6 61245.02991 107827.7505 58929.94325 70051.36196 65105.56926 57176.69204 52293.13878 84488.34592 66895.97193 0.829625438 0.915526423 1.611872096 0.880919158 1.04716861 0.973236017 0.854710536 0.781708334 1.262981066 1 16.02963172 AREES(ph)WGPPR ddPTM_HeLa_A485_30min_R1 6 AREESWGPPR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR ;;;;; 153.81 1.27E-06 4556120000 676668 895589 902929 731112 1153180 863986 1022180 1196830 843942 993640 TRUE FALSE FALSE 827190.4621 1000320.343 1236960.011 771050.7973 1038365.35 909222.971 803782.8926 903305.5659 1013313.418 745943.8346 1.108917889 1.341012951 1.658248187 1.03365798 1.39201546 1.218889317 1.077538087 1.210956541 1.358431254 1 19.50870748 -6.508427477 22.58768131 1.174868697 1.312269108 0.126321549 0.179140432 431.8730278 675033.4258 0.064501711 0.054687564 3.10E-07 6.508427477 0.137400411 AREES(ph)WGPPR ddPTM_HeLa_A486_30min_R1 5 AREESWGPPR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR;AREES(1)WGPPR ;;;; 164.48 2.28E-07 2817080000 684211 781030 688170 305224 936800 709060 826270 862120 645312 795780 TRUE FALSE FALSE 636251.3422 719138.3383 954647.8538 710576.8972 819297.8087 621583.3864 619528.5066 665834.0959 701248.1637 596511.5083 1.066620398 1.205573284 1.600384637 1.191220768 1.373481982 1.042030837 1.038586009 1.116213328 1.175581953 1 19.18619045 -6.268155755 24.9548613 1.079502225 1.294945662 0.372522343 0.137955609 601.6381328 2235395.018 0.049272513 0.044461524 5.39E-07 6.268155755 0.215443437 AREGS(ph)FESR ddPTM_HeLa_A486_30min_R1 1 AREGSFESR 9 1 P19174-2;V9GY71;V9GYH5;P19174 P19174-2;V9GY71 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 AREGS(1)FESR 83.617 0.0028028 1139700000 736730 900990 805210 330670 1061100 767730 871710 886920 654560 857980 TRUE FALSE FALSE 685089.0315 829592.2711 1117008.876 769816.4711 928006.9436 673015.2783 653598.938 684987.6773 711297.7878 643136.2235 1.065231605 1.28991688 1.736815367 1.196972652 1.44293994 1.046458361 1.016268271 1.065074011 1.10598309 1 19.29476482 -6.271505032 24.12323307 1.048918308 1.356629679 0.449821904 0.165477161 415.1569343 994957.1039 0.059035885 0.052689152 5.35E-07 6.271505032 0.30771137 ARFEELCSDLFR ddPTM_HeLa_A485_30min_R1 2 ARFEELCSDLFR 12 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ; ; 157.52 4.14E-08 357870000 190555 263406 294900 209087 342120 282890 328330 379060 261800 278829 FALSE FALSE TRUE 232943.3023 294209.0404 403995.7818 220508.8934 308057.3315 297701.683 258179.6133 286094.9407 314340.8586 209322.0618 1.112846397 1.40553288 1.930020077 1.053443156 1.4716907 1.422218377 1.233408515 1.36676917 1.501709165 1 17.67536485 -10.90429191 2.431062972 0.769812229 1.393411714 0.204674343 0.22964921 65267151.97 37012406.01 85987505.8 0.062274408 1.25E-11 10.90429191 0.623599485 ARFEELCSDLFR ddPTM_HeLa_A486_30min_R1 2 ARFEELCSDLFR 12 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ; ; 176.08 5.48E-11 210740000 210518 281420 287650 107638 409080 273490 314760 338590 250340 300010 FALSE FALSE TRUE 195761.7753 259119.2543 399035.7835 250586.7037 357769.3719 239749.5844 236003.7188 261500.4484 272039.6728 224885.5433 0.870495153 1.152227264 1.774395 1.114285516 1.59089538 1.066096028 1.049439263 1.162815735 1.209680573 1 17.7788314 ARFEELNADLFR ddPTM_HeLa_A485_30min_R1 7 ARFEELNADLFR 12 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;;;;;; ;;;;;; 197.38 2.92E-14 3388655000 1682402 2132455 2172106 1873077 2725136 2225504 2705711 3186141 2035435 2522826 FALSE FALSE TRUE 2056646.521 2381827.062 2975658.398 1975398.454 2453811.891 2342027.948 2127613.741 2404734.924 2443928.134 1893931.907 1.085913655 1.25760966 1.571153845 1.043014506 1.2956178 1.236595645 1.123384496 1.269705059 1.290399156 1 20.85295303 -10.90268537 2.414686687 0.857636418 1.244625369 0.213766198 0.138821495 19063374.64 9531211.306 15395762.83 0.033924402 1.25E-11 10.90268537 0.386988951 ARFEELNADLFR ddPTM_HeLa_A486_30min_R1 3 ARFEELNADLFR 12 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;; ;; 175.74 6.25E-11 1554005000 923592 1046712 955395 434932 1284511 998115 1243651 1264365 882121 1267459 FALSE FALSE TRUE 858852.9702 963766.7291 1325349.53 1012543.676 1123395.653 874977.7194 932476.3658 976496.6904 958583.9585 950079.0166 0.903980569 1.01440692 1.39498874 1.065746805 1.182423391 0.920952578 0.981472435 1.027805765 1.008951826 1 19.85768798 -6.259900873 24.99873562 0.989176626 1.119987874 0.207262529 0.121238013 236.7441466 3846795.716 0.042875338 0.040761465 5.50E-07 6.259900873 0.130811248 ARGDS(ph)EALDEES ddPTM_HeLa_A485_30min_R1 2 ARGDSEALDEES 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 ARGDS(1)EALDEES;ARGDS(1)EALDEES ; 179.41 1.17E-11 12428200000 5054800 6478000 6404500 4988900 7482200 5949800 7267400 7285000 5781600 6812900 TRUE FALSE FALSE 6179222.821 7235545.749 8773791.063 5261430.974 6737245.896 6261322.328 5714660.621 5498342.328 6941914.088 5114569.412 1.208160907 1.41469304 1.71545058 1.028714355 1.317265512 1.224212993 1.117329761 1.075035235 1.357282213 1 22.28618136 -5.279594042 24.99703029 1.170556825 1.442960708 0.405734295 0.158308566 812.8859334 1119255.145 0.044148153 0.065624684 5.25E-06 5.279594042 0.272403883 ARGDS(ph)EALDEES ddPTM_HeLa_A486_30min_R1 2 ARGDSEALDEES 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 ARGDS(1)EALDEES;ARGDS(1)EALDEES ; 232.35 8.99E-23 11051500000 3187900 3881700 3339100 1137510 4564300 3348400 3947800 4107500 3224100 3617100 TRUE FALSE FALSE 2964444.672 3574099.955 4632088.944 2648180.767 3991802.934 2935308.452 2960018.684 3172311.916 3503567.584 2711354.617 1.093344505 1.31819716 1.708403953 0.976700263 1.472254094 1.082598504 1.091712116 1.170009964 1.292183458 1 21.37058238 -6.283761186 24.71110154 1.135702128 1.317222314 0.180826078 0.197982086 1296.401117 1435160.821 0.068750073 0.060678542 5.20E-07 6.283761186 0.181520185 ARGIS(ph)PIVFDR ddPTM_HeLa_A485_30min_R1 5 ARGISPIVFDR 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 ARGIS(1)PIVFDR;ARGIS(1)PIVFDR;ARGIS(1)PIVFDR;ARGIS(1)PIVFDR;ARGIS(1)PIVFDR ;;;; 115.24 0.00017642 992920000 83898 374246 232628 62411.9 231873 315176 289188 448036 181155 111000.9 TRUE FALSE FALSE 102560.8207 418010.8142 318686.7777 65821.30406 208786.91 331678.128 227400.6214 338154.4685 217511.1468 83330.41845 1.230772899 5.016305234 3.824375103 0.789883278 2.50553056 3.980276761 2.728902909 4.057995565 2.610225064 1 16.3465556 ARGIS(ph)PIVFDR ddPTM_HeLa_A486_30min_R1 1 ARGISPIVFDR 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 ARGIS(1)PIVFDR 100.41 0.0002542 0 46070 31875 25529 9913.7 38369 20106 30951 31744 17181 38559 TRUE FALSE FALSE 42840.73091 29349.10891 35414.51249 23079.59461 33556.40224 17625.52614 23206.73243 24516.58417 18670.26291 28903.57542 1.482194859 1.015414477 1.225264071 0.798503101 1.160977552 0.609804354 0.80290179 0.848219772 0.645949944 1 14.81896035 -2.269407329 0.436729996 0.783816345 5.059344074 0.569244293 0.170216515 18.62564373 0.677822676 0.105928746 59.56617001 0.005377652 2.269407329 4.275527729 ARGQGS(ph)SPVAMQK ddPTM_HeLa_A485_30min_R1 2 ARGQGSSPVAMQK 13 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 ARGQGS(0.5)S(0.5)PVAMQK;ARGQGS(0.5)S(0.5)PVAMQK ; 80.632 0.0011285 231390000 273210 407370 308660 292290 482450 432700 517710 616290 360570 422540 TRUE FALSE FALSE 333984.6219 455008.3779 422846.1784 308257.0626 434415.584 455355.5029 407097.0292 465143.9112 432933.0917 317208.5543 1.052886555 1.434413958 1.333022621 0.971780422 1.369495173 1.43550827 1.283373426 1.466366228 1.364821616 1 18.27507215 ARGQGSS(ph)PVAMQK ddPTM_HeLa_A485_30min_R1 2 ARGQGSSPVAMQK 13 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 ARGQGS(0.112)S(0.888)PVAMQK;ARGQGS(0.124)S(0.876)PVAMQK ; 156.5 1.05E-08 838740000 506660 794250 586470 529740 940770 878220 1047180 1352890 733350 818350 TRUE FALSE FALSE 619364.769 887130.6284 803429.6581 558678.3548 847103.6356 924202.2412 823441.4383 1021091.606 880526.6183 614350.4056 1.008162058 1.444014068 1.307771022 0.909380623 1.378860709 1.50435685 1.340344909 1.662067115 1.433264486 1 19.22870223 -5.976688335 24.99585707 1.428096178 1.190500541 0.192232728 0.210201957 348.5877358 373770.2847 0.063385431 0.071868617 1.06E-06 5.976688335 -0.237595637 ARGQGSS(ph)PVAMQK ddPTM_HeLa_A486_30min_R1 2 ARGQGSSPVAMQK 13 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 ARGQGS(0.151)S(0.849)PVAMQK;ARGQGS(0.249)S(0.751)PVAMQK ; 131.56 9.10E-06 747930000 803140 720900 548040 298650 917070 663300 906430 944960 505920 868600 TRUE FALSE FALSE 746844.0334 663773.2585 760255.765 695272.2929 802042.5293 581468.7899 679631.6268 729813.2363 549773.5529 651096.9064 1.14705511 1.019469225 1.167653782 1.067847637 1.231832806 0.893060287 1.043825612 1.120898025 0.844380533 1 19.31251276 -6.265020993 24.9997413 0.991951067 1.119808128 0.398966826 0.089044066 373.4535082 2606703.662 0.029884246 0.027392568 5.43E-07 6.265020993 0.127857061 ARGSASYS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 ARGSASYSPPR 11 1 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 0 ARGS(0.001)AS(0.025)Y(0.024)S(0.95)PPR;ARGS(0.001)AS(0.012)Y(0.003)S(0.984)PPR ; 56.569 0.017841 508130000 347099 475130 316080 308446 372740 532170 435100 547440 457060 376460 TRUE FALSE FALSE 424309.9751 530692.3204 433011.1452 325295.624 335628.6968 560033.5983 342137.3306 413179.4816 548787.7496 282615.4502 1.501368643 1.877789484 1.532156663 1.151018544 1.187580851 1.981609986 1.21061085 1.461984762 1.941817934 1 18.10848081 -4.99076352 24.17856155 1.435724246 1.69342773 0.101744652 0.31762427 319.670112 836785.3847 0.081839097 0.169940761 1.02E-05 4.99076352 0.257703484 ARGSASYS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 ARGSASYSPPR 11 1 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 0 ARGSAS(0.015)Y(0.004)S(0.981)PPR 54.199 0.020124 251950000 139690 137900 114350 49189 162970 112460 146060 151960 107810 150880 TRUE FALSE FALSE 129898.4524 126972.3018 158629.3824 114514.4779 142528.783 98585.82861 109514.2431 117362.0253 117155.0576 113098.6659 1.148540978 1.12266843 1.402575186 1.012518379 1.260216306 0.871679854 0.968307117 1.037695929 1.035865955 1 16.78722239 -6.254529176 24.97198762 0.9841656 1.187628881 0.50023956 0.103235637 470.3250427 1699654.446 0.033821111 0.033123775 5.57E-07 6.254529176 0.203463282 ARHDS(ph)PDLAPNVTYSLPR ddPTM_HeLa_A485_30min_R1 4 ARHDSPDLAPNVTYSLPR 18 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR ;;; 214.65 8.97E-27 5225110000 647250 1128690 1069190 758230 1207800 1007060 1139110 1319610 939270 1051760 TRUE FALSE FALSE 791228.5295 1260680.477 1464727.874 799650.185 1087547.191 1059788.104 895729.8428 995973.5784 1127772.874 789575.5882 1.002093455 1.596655844 1.855082522 1.012759509 1.377381985 1.342225013 1.134444702 1.261403713 1.42832794 1 19.59071786 -5.281224096 24.94946802 1.241045188 1.495815235 0.199302205 0.238515892 1275.600674 1608590.132 0.066877145 0.099339232 5.23E-06 5.281224096 0.254770047 ARHDS(ph)PDLAPNVTYSLPR ddPTM_HeLa_A486_30min_R1 4 ARHDSPDLAPNVTYSLPR 18 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR ;;; 192.47 1.38E-18 3295020000 995450 1112290 978090 339657 1368560 943840 1127110 1170100 942300 1132150 TRUE FALSE FALSE 925674.0955 1024148.09 1356832.642 790738.6613 1196902.443 827398.6171 845095.1566 903693.7731 1023979.323 848652.2709 1.090757814 1.206793553 1.59880871 0.93175814 1.410356732 0.974955992 0.995808514 1.064857544 1.206594689 1 19.69481402 -6.278230195 24.92630813 1.049207266 1.247376969 0.241536146 0.176539029 1207.038362 1791867.957 0.06083561 0.053785627 5.27E-07 6.278230195 0.198169703 ARHDT(ph)PDPS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 ARHDTPDPSPLR 12 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 ARHDT(1)PDPS(1)PLR;ARHDT(1)PDPS(1)PLR ; 66.068 0.014563 1792770000 673220 1314450 1621740 598470 1309730 1048840 965110 937700 1263760 840000 TRUE FALSE FALSE 822975.4664 1468163.493 2221689.112 631162.9007 1179328.682 1103755.641 758906.3643 707727.6047 1517385.04 630603.4591 1.305060184 2.328188138 3.523115962 1.000887153 1.870158918 1.750316502 1.203460516 1.122302129 2.406242811 1 19.26637356 -5.293875395 24.99978517 1.500264287 2.379729243 0.290018602 0.6492796 821.9405342 633501.9584 0.182246178 0.270336249 5.08E-06 5.293875395 0.879464956 ARHDT(ph)PDPS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 ARHDTPDPSPLR 12 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 ARHDT(1)PDPS(1)PLR 61.167 0.023923 540600000 472290 756110 851830 151060 872050 488870 528820 635280 652810 449960 TRUE FALSE FALSE 439184.9099 696193.0899 1181681.389 351675.3141 762669.3575 428558.1899 396503.6427 490640.6121 709396.0964 337287.0873 1.302110061 2.064096481 3.503488374 1.042658695 2.261187535 1.270603608 1.175567218 1.454667643 2.103241195 1 18.36361756 ARHFS(ph)EHPSTSK ddPTM_HeLa_A485_30min_R1 1 ARHFSEHPSTSK 12 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ARHFS(0.999)EHPS(0.001)TSK 71.98 0.0065937 43065000 20577 41952 33023 19325 53794 48513 85522 126370 37477 37043 TRUE FALSE FALSE 25154.28266 46857.92147 45239.5819 20380.67582 48438.08048 51053.06566 67249.52605 95377.55936 44998.29014 27808.86183 0.90454197 1.684999615 1.626804512 0.732884213 1.741821754 1.835855994 2.418276824 3.429754154 1.618127719 1 14.76325708 -6.314599949 2.182210822 2.296010639 1.307017678 0.228041661 0.657406073 0.389166433 3.639235418 0.257754706 0.229007573 4.85E-07 6.314599949 -0.988992961 ARIPS(ph)GK ddPTM_HeLa_A485_30min_R1 5 ARIPSGK 7 1 A0A0B4J226;Q9NTM9 A0A0B4J226 CUTC Copper homeostasis protein cutC homolog 1 0 ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK ;;;; 78.939 0.0066066 3591630000 1723043 2112500 1689418 2022589 2398870 2369320 3144500 3473910 1929087 2929330 TRUE FALSE FALSE 2106327.971 2359538.499 2314404.021 2133077.916 2160030.08 2493373.932 2472651.887 2621928.126 2316237.066 2199101.941 0.957812792 1.072955489 1.052431439 0.969976824 0.98223281 1.13381462 1.124391662 1.192272207 1.053264982 1 21.06848305 -6.264619164 24.97444535 1.114243395 1.011199544 0.379420002 0.058520795 269.1175487 2113677.643 0.019885443 0.01826124 5.44E-07 6.264619164 -0.103043851 ARIPS(ph)GK ddPTM_HeLa_A486_30min_R1 6 ARIPSGK 7 1 A0A0B4J226;Q9NTM9 A0A0B4J226 CUTC Copper homeostasis protein cutC homolog 1 0 ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK;ARIPS(1)GK ;;;;; 82.029 0.0053444 4828050000 3068040 2934120 1895872 1147214 3041830 2887950 3546050 3380760 2233210 3716970 TRUE FALSE FALSE 2852986.239 2701609.645 2630004.412 2670772.169 2660295.317 2531664.092 2658790.784 2611034.749 2426786.441 2786216.519 1.023964297 0.969633777 0.943933967 0.958565909 0.954805666 0.908638677 0.954265674 0.937125572 0.870997076 1 21.40987594 -1 0.65613828 0.934378048 9.229390025 0.39062185 0.03178363 220.8028886 1.391462175 0.012629661 2663.915017 0.1 1 8.295011978 ARLGEAS(ph)DSELADADK ddPTM_HeLa_A485_30min_R1 1 ARLGEASDSELADADK 16 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 ARLGEAS(0.972)DS(0.028)ELADADK 139.79 1.17E-06 658770000 372020 387480 285560 584440 480830 434070 621790 551210 370240 805190 TRUE FALSE FALSE 454774.5655 432792.4154 391200.5271 616366.4773 432956.8769 456797.234 488939.4869 416024.8832 444543.772 604470.9514 0.752351398 0.715985465 0.647178373 1.019679235 0.71625754 0.755697578 0.808871768 0.688246279 0.735426195 1 19.20531349 -10.47956711 2.740868979 1.008951777 0.760911696 0.359832939 0.096040969 17720610.92 18734937.32 1202629.991 0.024545862 3.31E-11 10.47956711 -0.248040081 ARLGEAS(ph)DSELADADKASVASEVSTTSSTSKPPTGR ddPTM_HeLa_A486_30min_R1 1 ARLGEASDSELADADKASVASEVSTTSSTSKPPTGR 36 3 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 ARLGEAS(0.979)DS(0.021)ELADADKASVASEVSTTSSTSKPPTGR 209.07 1.14E-29 197560000 78751 66747 37605 48659 92833 66281 115830 125660 43999 120020 TRUE FALSE FALSE 73230.96157 61457.72463 52166.6631 113280.6111 81189.01951 58103.92412 86848.10888 97049.96114 47812.86875 89966.2108 0.813982949 0.683120075 0.579847285 1.259146185 0.902439024 0.645841629 0.965341411 1.078737898 0.531453624 1 16.45709564 ARLS(ph)SAYLLGVPGSEQPDR ddPTM_HeLa_A486_30min_R1 1 ARLSSAYLLGVPGSEQPDR 19 1 Q96P48-3;Q96P48;E7EU13;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 ARLS(0.918)S(0.081)AYLLGVPGSEQPDR 84.208 0.0022634 0 55259 66891 55312 39447 80196 85726 103830 91776 55352 93895 TRUE FALSE FALSE 51385.62946 61590.31355 76730.28771 91834.60954 70137.06988 75149.99772 77850.6358 70880.60826 60149.95593 70383.08085 0.73008497 0.875072714 1.090180861 1.304782462 0.996504686 1.067728164 1.106098722 1.00706885 0.85460817 1 16.10294105 -4.569639139 3.379258868 1.062479505 0.748713896 0.48220642 0.108278711 0.199546765 4.493544517 0.02975406 0.109752058 2.69E-05 4.569639139 -0.313765608 ARLS(ph)YSDK ddPTM_HeLa_A485_30min_R1 4 ARLSYSDK 8 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 ARLS(1)YSDK;ARLS(1)YSDK;ARLS(0.997)YS(0.003)DK;ARLS(0.999)YS(0.001)DK ;;; 175.74 6.61E-06 3220700000 3093530 2455850 2167030 4158320 2975310 2519180 3313320 2644010 2537180 5261000 TRUE FALSE FALSE 3781675.076 2743040.294 2968704.575 4385478.492 2679077.689 2651080.369 2605402.115 1995562.402 3046368.754 3949529.522 0.957500142 0.694523304 0.751660308 1.110379975 0.678328311 0.671239538 0.659674045 0.505265853 0.771324467 1 21.91324938 ARLS(ph)YSDK ddPTM_HeLa_A486_30min_R1 3 ARLSYSDK 8 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 ARLS(1)YSDK;ARLS(1)YSDK;ARLS(0.999)YS(0.001)DK ;; 163.12 1.81E-05 1630390000 1503040 1729480 1010230 657850 1334360 1827710 2014330 1823800 1454190 2160830 TRUE FALSE FALSE 1397684.658 1592429.706 1401418.111 1531508.046 1166992.126 1602225.723 1510323.329 1408560.553 1580240.36 1619744.103 0.862904612 0.983136597 0.865209577 0.945524693 0.720479318 0.989184477 0.932445641 0.869619189 0.975611121 1 20.62733448 ARLS(ph)YSDKNLIDSMDQSAFAGFSFVNPK ddPTM_HeLa_A485_30min_R1 2 ARLSYSDKNLIDSMDQSAFAGFSFVNPK 28 2 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 ARLS(0.494)Y(0.003)S(0.494)DKNLIDS(0.009)MDQSAFAGFSFVNPK;ARLS(0.368)Y(0.13)S(0.368)DKNLIDS(0.067)MDQS(0.067)AFAGFSFVNPK ; 147.3 1.76E-09 706353000 295347 313705 220227 353743 409989 404860 603453 683664 274111 490362 TRUE FALSE FALSE 361045.9212 350390.0709 301698.1317 373067.0844 369169.0556 426057.8436 474520.3368 515994.3321 329122.5634 368123.7778 0.980773161 0.951826782 0.81955622 1.013428381 1.002839474 1.157376592 1.28902387 1.40168705 0.894054074 1 18.48983141 -6.102088984 2.14264 1.18479166 0.931918287 0.317354201 0.14076152 0.332669104 3.01733225 0.052233313 0.053450395 7.91E-07 6.102088984 -0.252873373 ARLS(ph)YSDKNLIDSMDQSAFAGFSFVNPK ddPTM_HeLa_A486_30min_R1 5 ARLSYSDKNLIDSMDQSAFAGFSFVNPK 28 2 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 ARLS(0.5)YS(0.5)DKNLIDSMDQSAFAGFSFVNPK;ARLS(0.927)YS(0.047)DKNLIDS(0.026)MDQSAFAGFSFVNPK;ARLS(0.355)Y(0.29)S(0.355)DKNLIDSMDQSAFAGFSFVNPK;ARLS(0.995)YS(0.005)DKNLIDSMDQSAFAGFSFVNPK;ARLS(0.416)Y(0.121)S(0.416)DKNLIDS(0.038)MDQS(0.01)AFAGFSFVNPK ;;;; 226.97 9.88E-39 2070960000 1121276 1067563 660643 606614 1230560 1186917 1606020 1458330 881601 1575350 TRUE FALSE FALSE 1042680.343 982965.4199 916461.6622 1412228.049 1076211.69 1040487.248 1204176.809 1126300.094 958018.8845 1180872.106 0.882974826 0.832406333 0.776088839 1.195919559 0.911370236 0.881117644 1.019735163 0.953786687 0.811280815 1 20.17142129 ARLSYS(ph)DKNLIDSMDQSAFAGFSFVNPK ddPTM_HeLa_A485_30min_R1 1 ARLSYSDKNLIDSMDQSAFAGFSFVNPK 28 2 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 ARLS(0.409)Y(0.01)S(0.581)DKNLIDSMDQSAFAGFSFVNPK 121.86 1.45E-05 762330000 500690 494500 361300 526930 634430 715590 882080 993620 421990 852230 TRUE FALSE FALSE 612066.7631 552327.4734 494959.9049 555714.8516 571263.9216 753057.1859 693616.4021 749933.1371 506679.5223 639784.7451 0.956676082 0.863302037 0.773635053 0.868596596 0.892900192 1.177047736 1.084140263 1.172164768 0.791953116 1 19.28722707 -6.110613411 6.574266563 1.057777943 0.861452245 0.387858338 0.109055348 0.239047332 12.45915337 0.035685714 0.03578824 7.75E-07 6.110613411 -0.196325699 ARMALS(ph)FS(ph)RFLRR ddPTM_HeLa_A486_30min_R1 1 ARMALSFSRFLRR 13 3 E9PD91;A0A1B0GVU3;O75916-4;O75916-5;O75916 E9PD91 RGS9 Regulator of G-protein signaling 9 2 0 ARMALS(1)FS(1)RFLRR 42.958 0.037092 87030000 54204 53836 30701 10755 50841 67979 68314 67540 27825 84600 TRUE FALSE FALSE 50404.57951 49569.83929 42589.2494 25038.18353 44464.04771 59592.44214 51221.11465 52162.61639 30236.8934 63415.60935 0.794829223 0.781666214 0.671589374 0.394826822 0.701153047 0.939712521 0.807705156 0.822551686 0.476805217 1 15.95255037 -6.013335779 24.92210376 0.800635907 0.654873165 0.157657591 0.163723134 1252.446891 2340593.21 0.054500795 0.056930898 9.70E-07 6.013335779 -0.145762742 ARPAEVGGMQLR ddPTM_HeLa_A485_30min_R1 1 ARPAEVGGMQLR 12 1 H0YNW5;H0YMM5;H0YKC5;P33316-2;H0YNJ9;P33316;H0YKI0 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 81.239 0.014429 17927000 14598 25787 39306 11111 36157 18661 18237 18775 26974 18670 FALSE FALSE TRUE 17845.27474 28802.56533 53846.92506 11717.9658 32557.08213 19638.0611 14340.51597 14170.40181 32387.43438 14015.9126 1.273215327 2.054990364 3.841842241 0.836047294 2.322865664 1.401126111 1.023159632 1.011022416 2.310761726 1 13.77477806 -5.931054338 1.389869435 1.341719057 2.222757664 0.146079635 0.822098395 0.775178801 3.108171865 0.336796595 0.402378239 1.17E-06 5.931054338 0.881038607 ARPAPS(ph)RDPSPPR ddPTM_HeLa_A485_30min_R1 1 ARPAPSRDPSPPR 13 2 Q5C9Z4 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 1 0 ARPAPS(0.881)RDPS(0.119)PPR 59.513 0.022289 219000000 76672 88917 106440 87136 107990 81991 92082 84182 87506 126400 TRUE FALSE FALSE 93727.42188 99315.06967 145816.5853 91896.01904 97238.13642 86283.92198 72407.92846 63536.23251 105067.6515 94890.80622 0.987739757 1.046624785 1.536677695 0.968439649 1.024737172 0.909296964 0.763065795 0.669572059 1.107247959 1 16.53398069 -5.859010908 1.860906464 0.864237709 1.171228286 0.290474146 0.183965877 0.399450377 2.843752092 0.067179344 0.08197972 1.38E-06 5.859010908 0.306990577 ARPAPSRDPS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 ARPAPSRDPSPPR 13 2 Q5C9Z4 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 1 0 ARPAPS(0.025)RDPS(0.975)PPR 52.026 0.022109 101140000 6255.2 7713 9135.3 7612.6 9103.2 5622.2 4337.8 8021.7 10010 9779.7 TRUE FALSE FALSE 7646.64766 8614.968256 12514.82762 8028.457062 8196.853445 5916.569698 3410.993593 6054.365497 12018.91518 7341.800772 1.041522087 1.173413516 1.704599186 1.093526958 1.116463617 0.805874455 0.46459904 0.82464312 1.637052755 1 12.84191825 -5.821768504 2.421628449 0.912744284 1.294251602 0.164165692 0.321578653 0.479874718 5.756935931 0.112893564 0.137927229 1.51E-06 5.821768504 0.381507318 ARPAPSRDPS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 ARPAPSRDPSPPR 13 2 Q5C9Z4 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 1 0 ARPAPS(0.068)RDPS(0.932)PPR 76.82 0.0050497 202490000 66444 83364 78620 22702 88220 68698 67437 65586 71994 66441 TRUE FALSE FALSE 61786.61872 76757.93303 109063.7695 52851.4033 77154.62498 60222.73923 50563.54932 50653.49953 78234.49789 49803.74114 1.240601957 1.541208176 2.189871022 1.061193438 1.549173279 1.209201113 1.015256046 1.01706214 1.570855845 1 15.6039665 -5.881908586 1.407275735 1.158218943 1.6010114 0.23983515 0.313132689 0.583108359 2.404215468 0.125505797 0.15639147 1.31E-06 5.881908586 0.442792457 ARPATDS(ph)FDDYPPR ddPTM_HeLa_A486_30min_R1 1 ARPATDSFDDYPPR 14 1 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 ARPAT(0.015)DS(0.985)FDDYPPR 67.645 0.0029776 0 144030 158160 89135 54993 154160 151600 173280 175170 147150 199750 TRUE FALSE FALSE 133934.2408 145626.8256 123650.4591 128026.4832 134823.8153 132897.1334 129923.5112 135287.6149 159905.0805 149731.2998 0.894497282 0.972587734 0.825815706 0.855041553 0.900438422 0.887570825 0.867711102 0.903535968 1.06794692 1 17.19201631 -7.703883076 6.482322666 1.033416012 0.886981453 0.691175393 0.038968669 0.101702617 8.520464761 0.028066239 0.010106574 1.98E-08 7.703883076 -0.146434559 ARPGGGGPQRPGPPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ARPGGGGPQRPGPPSPR 17 2 O00268 O00268 TAF4 Transcription initiation factor TFIID subunit 4 1 0 ARPGGGGPQRPGPPS(1)PR;ARPGGGGPQRPGPPS(1)PR ; 55.588 0.015814 256552000 65410 85775 91463 90851 93642 85836 106590 107930 81652 99368 TRUE FALSE FALSE 79960.22884 95805.64011 125298.9698 95813.96008 84318.67368 90330.24023 83816.17574 81459.99827 98038.80744 74597.38633 1.071890488 1.284302907 1.679669704 1.284414439 1.130316729 1.210903554 1.123580595 1.09199534 1.314239175 1 16.18683746 -5.616825519 5.158202015 1.153273669 1.3605771 0.249300365 0.158013025 0.292804962 12.68565172 0.048407897 0.063046761 2.42E-06 5.616825519 0.20730343 ARPGGGGPQRPGPPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ARPGGGGPQRPGPPSPR 17 2 O00268 O00268 TAF4 Transcription initiation factor TFIID subunit 4 1 0 ARPGGGGPQRPGPPS(1)PR 62.966 0.013394 186260000 50240 57189 56097 18496 69031 48930 62647 57956 54034 58936 TRUE FALSE FALSE 46718.43544 52657.13536 77819.26073 43059.62274 60372.48829 42893.51408 46972.05799 44760.68397 58717.71063 44178.04199 1.057503532 1.19193004 1.761491846 0.97468382 1.366572296 0.970923838 1.063244451 1.013188497 1.329115279 1 15.43104186 -6.258883981 24.99375845 1.075365571 1.276925017 0.16678385 0.217841964 425.2310216 4159100.063 0.073176092 0.070012728 5.51E-07 6.258883981 0.201559446 ARPMSLSTIAILNS(ph)VKK ddPTM_HeLa_A486_30min_R1 1 ARPMSLSTIAILNSVKK 17 2 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 ARPMSLSTIAILNS(1)VKK 97.457 0.00025007 54791000 90504 77505 40547 57632 75551 96309 121760 110660 56237 119550 TRUE FALSE FALSE 84160.13696 71363.22153 56247.88429 134170.2086 66074.68909 84427.37478 91294.36015 85465.13369 61111.66844 89613.90186 0.939141531 0.79634097 0.62766918 1.497203065 0.737326327 0.942123633 1.018752205 0.953703967 0.681944064 1 16.45143494 ARPS(ph)ETGSDDDWEYLLNSDYHQNVESHLLNR ddPTM_HeLa_A486_30min_R1 3 ARPSETGSDDDWEYLLNSDYHQNVESHLLNR 31 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 ARPS(0.422)ET(0.326)GS(0.253)DDDWEYLLNSDYHQNVESHLLNR;ARPS(0.377)ET(0.25)GS(0.373)DDDWEYLLNSDYHQNVESHLLNR;ARPS(0.402)ET(0.299)GS(0.299)DDDWEYLLNSDYHQNVESHLLNR ;; 240.87 1.27E-50 627627000 113148.6 138045.6 116944.5 27903.5 151491 117926.3 118457.4 126670 110513.3 101224.9 TRUE FALSE FALSE 105217.4674 127106.3639 162228.5423 64960.75816 132489.5862 103377.7521 88818.10561 97830.00619 120092.6818 75877.52618 1.386674985 1.67515166 2.138031515 0.856126464 1.746097861 1.362429132 1.170545616 1.289314651 1.582717412 1 16.21138502 -5.257230597 24.99751989 1.316253366 1.727472574 0.319408336 0.296484453 466.2167346 2769023.687 0.079405063 0.131508322 5.53E-06 5.257230597 0.411219207 ARPSET(ph)GSDDDWEYLLNSDYHQNVESHLLNR ddPTM_HeLa_A485_30min_R1 1 ARPSETGSDDDWEYLLNSDYHQNVESHLLNR 31 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 ARPS(0.161)ET(0.42)GS(0.42)DDDWEYLLNSDYHQNVESHLLNR 197.31 7.48E-29 105880000 32607 38110 38364 31627 42693 26624 42616 39582 41314 44390 TRUE FALSE FALSE 39860.31466 42566.63299 52556.44006 33354.70293 38442.33502 28017.99147 33510.74346 29874.45244 49605.34085 33324.38994 1.196130364 1.277341703 1.577116345 1.000909634 1.153579558 0.840765323 1.005592106 0.896474099 1.488559609 1 15.02429084 -5.287757007 24.99311315 1.043918813 1.34291073 0.336365566 0.189390041 800.5484937 760256.5909 0.052569192 0.077998216 5.16E-06 5.287757007 0.298991916 ARPSETGS(ph)DDDWEYLLNSDYHQNVESHLLNR ddPTM_HeLa_A485_30min_R1 2 ARPSETGSDDDWEYLLNSDYHQNVESHLLNR 31 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 ARPS(0.129)ET(0.129)GS(0.741)DDDWEYLLNSDYHQNVESHLLNR;ARPS(0.002)ET(0.016)GS(0.982)DDDWEYLLNSDYHQNVESHLLNR ; 331.31 1.05E-127 209314000 49824 61081 67325 53466 78771 66108 68528 70466 56118 79298 TRUE FALSE FALSE 60907.17691 68223.89162 92231.31913 56386.7122 70928.28266 69569.31266 53886.43298 53184.10301 67380.36786 59530.46797 1.023126123 1.146033182 1.549312852 0.94719081 1.191461869 1.168633727 0.905190818 0.893392994 1.131863568 1 15.86134062 -6.746289438 22.98478252 0.973727981 1.177785356 0.250281737 0.159139295 123.9351607 188028.3629 0.061416076 0.047326145 1.79E-07 6.746289438 0.204057375 ARPSQFPEQSSSAQQNGSVSDIS(ph)PVQAAK ddPTM_HeLa_A485_30min_R1 2 ARPSQFPEQSSSAQQNGSVSDISPVQAAK 29 1 O00139-1;O00139-5;O00139;O00139-4 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ARPSQFPEQSSSAQQNGSVSDIS(1)PVQAAK;ARPSQFPEQSSSAQQNGSVS(0.001)DIS(0.999)PVQAAK ; 226.59 5.10E-39 825630000 272590 267020 242840 305570 359220 283040 366600 372730 289860 414410 TRUE FALSE FALSE 333226.7051 298245.6662 332676.6214 322262.5154 323454.7955 297859.5367 288272.9152 281317.3831 348032.2432 311105.2137 1.071106142 0.958664957 1.069337982 1.035863435 1.039695837 0.957423803 0.926609078 0.904251587 1.118696274 1 18.24704305 -6.257041872 24.63053513 0.97198768 1.032659526 0.151440967 0.061258491 530.1269062 2969253.48 0.020253554 0.019587003 5.53E-07 6.257041872 0.060671847 ARPSQFPEQSSSAQQNGSVSDIS(ph)PVQAAK ddPTM_HeLa_A486_30min_R1 2 ARPSQFPEQSSSAQQNGSVSDISPVQAAK 29 1 O00139-1;O00139-5;O00139;O00139-4 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ARPSQFPEQSSSAQQNGS(0.007)VS(0.058)DIS(0.935)PVQAAK;ARPSQFPEQSSSAQQNGSVS(0.003)DIS(0.997)PVQAAK ; 288.61 1.14E-78 838810000 281730 285250 197090 114241 318380 310740 369700 352880 262050 385520 TRUE FALSE FALSE 261982.1819 262645.7511 273408.5263 265958.8214 278445.8116 272404.0582 277197.1497 272536.9273 284764.705 288983.2827 0.906565181 0.908861401 0.946104992 0.920325975 0.963536053 0.942629122 0.959215174 0.943088904 0.985402001 1 18.14062651 -1 0.095129122 1.03514884 0.666209691 0.779589565 0.013719163 62.44445589 0.424924883 0.200678345 3.004684804 0.1 1 -0.368939149 ARPSS(ph)PSTSWHRPAS(ph)PCPSPGPGHTLPPKPPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPR 34 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 3 0 ARPS(0.457)S(0.512)PS(0.035)T(0.021)S(0.028)WHRPAS(0.946)PCPS(0.001)PGPGHT(0.001)LPPKPPS(0.999)PR 119.94 2.07E-05 479700000 30076 42883 42984 16231 54999 42294 57235 49106 41181 42441 TRUE FALSE FALSE 36766.30244 47897.79382 58885.57031 17117.65843 49523.10645 44508.44844 45006.27468 37062.6765 49445.64897 31861.23977 1.153950779 1.50332486 1.848188292 0.537256508 1.554337082 1.396946533 1.412571357 1.163252804 1.551905994 1 14.95951478 -10.07913388 4.418252588 0.999971644 1.346502355 0.090053083 0.330773802 107873131.7 3.112393432 32468.73016 0.077359868 8.33E-11 10.07913388 0.346530711 ARPSS(ph)PSTSWHRPAS(ph)PCPSPGPGHTLPPKPPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPR 34 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 3 0 ARPS(0.408)S(0.427)PS(0.267)T(0.27)S(0.272)WHRPAS(0.355)PCPS(0.005)PGPGHT(0.013)LPPKPPS(0.983)PR;ARPS(0.467)S(0.528)PS(0.004)T(0.004)S(0.005)WHRPAS(0.992)PCPS(0.001)PGPGHT(0.006)LPPKPPS(0.993)PR ; 127.17 3.06E-06 687020000 123294 130296 94180 10609.3 158749 90266 123948 129344 118314 68223 TRUE FALSE FALSE 114651.7273 119970.8704 130649.0182 24698.98656 138837.2201 79129.89868 92934.89941 99895.19476 128569.5528 51139.51674 2.241939983 2.345952369 2.554756606 0.482972623 2.714871571 1.54733372 1.817281534 1.953385584 2.514094011 1 15.64215091 ARQEEGADAS(ph)EEDPTPAGEEDVKDAR ddPTM_HeLa_A486_30min_R1 1 ARQEEGADASEEDPTPAGEEDVKDAR 26 2 Q86X53;E5RHA3;H0YB25 Q86X53 ERICH1 Glutamate-rich protein 1 1 0 ARQEEGADAS(0.981)EEDPT(0.019)PAGEEDVKDAR 53.998 0.0070833 0 56982 48943 32016 33494 69762 71873 90231 96939 42415 81532 TRUE FALSE FALSE 52987.85606 45064.57843 44413.45262 77975.72469 61011.79946 63006.04001 67654.24943 74868.10586 46091.56635 61115.85652 0.867006683 0.737363117 0.726709158 1.27586733 0.99829738 1.030927874 1.106983577 1.225019334 0.754167069 1 15.89925912 -5.238818169 24.81294014 1.063959004 0.773059955 0.460930331 0.137989013 608.4752978 667428.3853 0.03592445 0.062165914 5.77E-06 5.238818169 -0.290899049 ARQPLSEASNQQPLS(ph)GGEEK ddPTM_HeLa_A485_30min_R1 2 ARQPLSEASNQQPLSGGEEK 20 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 ARQPLSEASNQQPLS(1)GGEEK;ARQPLSEASNQQPLS(1)GGEEK ; 224.93 7.90E-36 1394840000 911850 911930 664130 1204310 1269610 1068440 1608030 1623190 987610 1678220 TRUE FALSE FALSE 1114687.887 1018572.281 909819.3238 1270098.406 1143203.171 1124381.866 1264461.254 1225100.107 1185814.268 1259870.639 0.884763762 0.808473703 0.72215297 1.008118108 0.907397264 0.892458187 1.003643719 0.972401506 0.941219067 1 20.26484418 -5.268807195 24.99297928 0.956317261 0.805464499 0.652360091 0.051987845 350.7553999 1189826.401 0.014899862 0.022611161 5.39E-06 5.268807195 -0.150852762 ARQPQS(ph)PPR ddPTM_HeLa_A485_30min_R1 3 ARQPQSPPR 9 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 ARQPQS(1)PPR;ARQPQS(1)PPR;ARQPQS(1)PPR ;; 82.171 0.003275 1628130000 65766 171511 160292 50711 185879 126000 104330 161340 122449 68945 TRUE FALSE FALSE 80395.41981 191567.7195 219590.6811 53481.21352 167372.2341 132597.1652 82039.0432 121771.112 147023.3911 51758.28034 1.553286146 3.701199465 4.242619339 1.033288069 3.233728652 2.561854148 1.585041904 2.352688521 2.840577202 1 15.65950206 -9.814574063 0.204387256 7.40E-14 3.064990943 0.195461229 0.949843343 27.29818478 1.362874736 20.20640828 2.828101093 1.53E-10 9.814574063 3.064990943 ARQPQS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 ARQPQSPPR 9 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 ARQPQS(1)PPR;ARQPQS(1)PPR;ARQPQS(1)PPR;ARQPQS(1)PPR ;;; 68.536 0.0077261 1445500000 90939 111862 161224 23982.9 194165 77717.1 77007.6 109873 100057 65453.2 TRUE FALSE FALSE 84564.64571 102997.6477 223654.2505 55833.40323 169811.0152 68129.15437 57739.48398 84857.31641 108730.0213 49063.29269 1.723582766 2.099281195 4.558484322 1.137987285 3.461060314 1.388597272 1.17683671 1.729547932 2.216117496 1 15.58235644 -6.290356948 24.83821753 1.52748002 2.596496796 0.256338272 0.931066342 978.9147672 840817.6264 0.320844272 0.283004571 5.12E-07 6.290356948 1.069016776 ARRGS(ph)SSDEEGGPK ddPTM_HeLa_A485_30min_R1 2 ARRGSSSDEEGGPK 14 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 ARRGS(0.333)S(0.333)S(0.333)DEEGGPK;ARRGS(0.333)S(0.333)S(0.333)DEEGGPK ; 75.463 0.0052859 152720000 84765 173390 47215 120727 67258 272244 172681 439820 120783 144735 TRUE FALSE FALSE 103620.6818 193666.4522 64681.79328 127322.0103 60561.55736 286498.2749 135786.2937 331953.4554 145023.0402 108655.2282 0.953664942 1.782394235 0.595293889 1.171798288 0.557373616 2.636764744 1.249698666 3.055107987 1.334708349 1 16.72939807 -6.253324336 24.99960964 1.945852878 1.040614529 0.279399398 0.668386978 739.4715064 2278054.511 0.208025028 0.204570535 5.58E-07 6.253324336 -0.905238348 ARRGSS(ph)SDEEGGPK ddPTM_HeLa_A485_30min_R1 1 ARRGSSSDEEGGPK 14 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 ARRGS(0.282)S(0.436)S(0.282)DEEGGPK 105.39 0.00026037 158020000 56040 124580 35259 85351 42418 187120 116540 313260 79908 102520 TRUE FALSE FALSE 68505.90466 139148.5473 48302.77135 90013.50901 38194.71498 196917.3139 91640.27696 236432.4938 95944.80264 76963.65074 0.890107265 1.80797748 0.627604991 1.169558722 0.496269533 2.558575535 1.190695557 3.072002063 1.24662489 1 16.23188961 -6.25668791 24.99611189 1.904149481 1.032205301 0.258068945 0.68138124 515.4157758 2711456.992 0.214002273 0.20735493 5.54E-07 6.25668791 -0.87194418 ARRGSSS(ph)DEEGGPK ddPTM_HeLa_A485_30min_R1 1 ARRGSSSDEEGGPK 14 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 ARRGS(0.369)S(0.096)S(0.535)DEEGGPK 92.264 0.00088071 40303000 31599 63383 18858 44710 24366 99950 61825 161760 45875 59445 TRUE FALSE FALSE 38628.08853 70795.09049 25834.35895 47152.39409 21940.03549 105183.2274 48615.58369 122088.1064 55081.69171 44626.4555 0.865587197 1.586392863 0.578902327 1.05660182 0.491637421 2.356970238 1.089389313 2.735778699 1.234283366 1 15.4456116 -6.254870076 24.99227753 1.754652056 0.94218123 0.299445602 0.581135409 613.343399 2333407.122 0.181567345 0.177497094 5.56E-07 6.254870076 -0.812470826 ARS(ph)APPMEGAR ddPTM_HeLa_A485_30min_R1 2 ARSAPPMEGAR 11 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 ARS(1)APPMEGAR;ARS(1)APPMEGAR ; 83.54 0.0023746 426600000 142190 243497 238845 158702 369680 231099 277540 347250 217342 250702 TRUE FALSE FALSE 173819.675 271971.856 327203.7047 167371.4884 332873.3612 243198.9863 218241.3117 262086.393 260960.5458 188206.6052 0.923557782 1.445070728 1.738534651 0.88929657 1.768659292 1.292191557 1.1595837 1.392546201 1.386564226 1 17.52195774 -10.11970419 6.3230239 0.999999068 1.343349906 0.113606481 0.277573592 3.47E-06 4.83E-07 0.255514448 0.061971187 7.59E-11 10.11970419 0.343350839 ARS(ph)APPMEGAR ddPTM_HeLa_A486_30min_R1 2 ARSAPPMEGAR 11 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 ARS(1)APPMEGAR;ARS(1)APPMEGAR ; 105.39 0.00035847 307220000 112876 118627 146587 38131 213869 93115 134115 160887 90084 87819 TRUE FALSE FALSE 104963.9753 109226.5645 203349.4121 88770.89503 187043.5558 81627.41802 100558.0085 124256.5422 97892.55365 65828.55079 1.594505333 1.659258227 3.089076239 1.348516623 2.841374351 1.240000228 1.527574392 1.887578273 1.487083529 1 16.00642582 -6.301942519 24.99850135 1.490116343 2.094169921 0.273226925 0.548190303 784.8736467 484420.9781 0.186669644 0.164629041 4.99E-07 6.301942519 0.604053578 ARS(ph)DPTHQHR ddPTM_HeLa_A485_30min_R1 4 ARSDPTHQHR 10 1 A0A2R8Y6L5;A0A2R8Y6I6;Q13627-5;Q13627-2;Q13627 A0A2R8Y6L5 DYRK1A Dual specificity tyrosine-phosphorylation-regulated kinase 1A 1 0 ARS(0.996)DPT(0.004)HQHR;ARS(0.999)DPT(0.001)HQHR;ARS(0.975)DPT(0.025)HQHR;ARS(0.992)DPT(0.008)HQHR ;;; 130.07 4.90E-05 394089000 24426.2 16957.4 11057 24988 8403.4 30854.7 14238.7 22839.7 21656 23672.6 TRUE FALSE FALSE 29859.72392 18940.42042 15147.44442 26353.03117 7566.72799 32470.20438 11196.48543 17238.22776 26002.16056 17771.45648 1.680206907 1.06577761 0.85234682 1.482885277 0.425779845 1.827098663 0.630026325 0.969995216 1.463141785 1 14.1172743 -4.260962979 21.96002895 1.073102665 1.680207781 0.171269728 0.396064099 12.18823961 560768.5054 0.090682235 0.518056203 5.48E-05 4.260962979 0.607105116 ARS(ph)DPTHQHR ddPTM_HeLa_A486_30min_R1 3 ARSDPTHQHR 10 1 A0A2R8Y6L5;A0A2R8Y6I6;Q13627-5;Q13627-2;Q13627 A0A2R8Y6L5 DYRK1A Dual specificity tyrosine-phosphorylation-regulated kinase 1A 1 0 ARS(0.999)DPT(0.001)HQHR;ARS(0.998)DPT(0.002)HQHR;ARS(1)DPTHQHR ;; 89.629 0.0019698 107951000 17329.4 8705.7 24934.5 8335.6 8992.5 43351.9 14202.3 13262.9 34641.9 21499.1 TRUE FALSE FALSE 16114.69855 8015.828626 34589.80617 19405.69806 7864.576798 38003.58335 10648.73432 10243.2272 37644.68778 16115.58542 0.999944968 0.497396056 2.146357409 1.20415719 0.488010618 2.358188198 0.660772416 0.635609997 2.335918106 1 13.97616898 -4.672125207 23.08826973 1.316230894 0.748663378 0.110296218 0.680610675 26.67189885 6884.886796 0.167608437 0.443450124 2.13E-05 4.672125207 -0.567567517 ARS(ph)LEQPK ddPTM_HeLa_A486_30min_R1 1 ARSLEQPK 8 1 C9J8D8;B9ZVR7;Q15772-1;Q15772 C9J8D8 SPEG Striated muscle preferentially expressed protein kinase 1 0 ARS(1)LEQPK 71.153 0.0034108 0 69821 78393 62730 31836 93223 73257 88021 88929 67212 100830 TRUE FALSE FALSE 64926.90846 72180.85318 87020.73597 74115.8169 81530.10207 64219.29616 65997.21481 68681.80801 73037.99028 75581.51171 0.85903162 0.955006741 1.151349503 0.98060776 1.078704305 0.84966938 0.873192575 0.908711753 0.966347307 1 16.20574575 -6.264443074 24.99295671 0.910979212 1.008947988 0.208301805 0.082166952 404.053434 3362008.637 0.029151744 0.026862625 5.44E-07 6.264443074 0.097968775 ARS(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_HeLa_A485_30min_R1 1 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 ARS(0.921)MDS(0.064)S(0.015)DLSDGAVTLQEYLELKK 85.745 0.0015651 26597000 22350 22754 15431 31016 36783 38511 56139 74789 23906 41548 TRUE FALSE FALSE 27321.68039 25414.88237 21139.56904 32710.32554 33120.75537 40527.37641 44144.44404 56446.88049 28703.71492 31190.84823 0.875951824 0.81481857 0.677749091 1.048715485 1.061874147 1.299335501 1.415301171 1.809725727 0.920260799 1 14.92883517 -5.867117576 1.500120636 1.350898875 0.799848719 0.425075892 0.239594667 0.331165752 1.546280176 0.090725292 0.113287512 1.36E-06 5.867117576 -0.551050156 ARS(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_HeLa_A486_30min_R1 3 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 ARS(1)MDSSDLSDGAVTLQEYLELKK;ARS(0.808)MDS(0.166)S(0.027)DLSDGAVTLQEYLELKK;ARS(0.948)MDS(0.043)S(0.009)DLSDGAVTLQEYLELKK ;; 208.3 3.65E-29 476189000 677300 531896 390680 435211 836542 736721 1035649 1086094 453411 886338 TRUE FALSE FALSE 629824.7676 489746.6238 541961.7588 1013193.202 731615.1019 645831.8535 776518.6662 838814.1055 492713.0305 664393.1957 0.947969925 0.737133714 0.815724427 1.524990335 1.101177897 0.972062715 1.168763725 1.262526635 0.74159855 1 19.34167777 ARS(ph)PAAPR ddPTM_HeLa_A485_30min_R1 1 ARSPAAPR 8 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 ARS(1)PAAPR 48.981 0.027756 171680000 15263 20594 16064 19036 19087 18453 23474 29129 21084 25708 TRUE FALSE FALSE 18658.20169 23002.28916 22006.74208 20075.88848 17186.63126 19419.17055 18458.58814 21985.06708 25315.36541 19299.46872 0.966772814 1.191861263 1.140277092 1.04023011 0.890523543 1.006202338 0.956429858 1.139154004 1.311713072 1 14.23627351 -10.11866555 6.11094341 0.999999722 1.067475603 0.030028866 0.11993438 4.80E-07 6.92E-08 0.122939488 0.029817083 7.61E-11 10.11866555 0.06747588 ARS(ph)PDLGPQEQMNPK ddPTM_HeLa_A485_30min_R1 2 ARSPDLGPQEQMNPK 15 1 H3BUW4;H3BMU4;A0A0C4DGM2;C9K0J8;Q8IWY8-4;Q8IWY8-3;Q8IWY8-2;Q8IWY8 H3BUW4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 1 0 ARS(1)PDLGPQEQMNPK;ARS(1)PDLGPQEQMNPK ; 171.07 1.48E-12 430550000 460630 497970 430590 617910 642360 554130 678550 762860 458290 855590 TRUE FALSE FALSE 563095.5543 556203.2597 589883.1593 651664.8587 578404.3829 583143.39 533572.2493 575767.3889 550264.5993 642307.159 0.876676441 0.865945914 0.918381729 1.014568886 0.900510565 0.907888666 0.830711976 0.896405062 0.856700088 1 19.29290385 -6.539528011 24.9576849 0.884746938 0.916777332 0.00989562 0.055810275 743.3644193 1114313.294 0.021506901 0.016663478 2.89E-07 6.539528011 0.032030394 ARS(ph)PDLGPQEQMNPK ddPTM_HeLa_A486_30min_R1 3 ARSPDLGPQEQMNPK 15 1 H3BUW4;H3BMU4;A0A0C4DGM2;C9K0J8;Q8IWY8-4;Q8IWY8-3;Q8IWY8-2;Q8IWY8 H3BUW4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 1 0 ARS(1)PDLGPQEQMNPK;ARS(1)PDLGPQEQMNPK;ARS(1)PDLGPQEQMNPK ;; 171.28 1.44E-12 642240000 894610 970430 613740 389630 984090 982620 1154980 1148540 797520 1272840 TRUE FALSE FALSE 831902.4588 893529.5926 851396.5645 907078.3308 860656.2559 861394.3349 865991.7879 887042.5145 866649.6757 954112.5792 0.871912264 0.936503314 0.892343926 0.95070367 0.902048956 0.902822532 0.907641097 0.929704244 0.908330625 1 19.86379998 -14 0.36075516 2.084536832 0.91013011 0.608470277 0.021396037 315.8005272 2.51793637 265.9408283 0.014787168 1.00E-14 14 -1.174406723 ARS(ph)PGREEVAR ddPTM_HeLa_A485_30min_R1 3 ARSPGREEVAR 11 2 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 0 ARS(1)PGREEVAR;ARS(1)PGREEVAR;ARS(1)PGREEVAR ;; 87.989 0.0021796 3856220000 576083 782770 893020 609339 996320 805990 905970 1026250 774550 813900 TRUE FALSE FALSE 704230.6759 874308.1423 1223385.26 642625.6466 897122.8825 848190.3901 712402.1084 774560.5784 929995.0804 611009.7087 1.152568717 1.430923486 2.002235385 1.051743757 1.468262893 1.388178253 1.165942371 1.267673111 1.522062689 1 19.22083578 ARS(ph)PGREEVAR ddPTM_HeLa_A486_30min_R1 3 ARSPGREEVAR 11 2 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 0 ARS(1)PGREEVAR;ARS(1)PGREEVAR;ARS(1)PGREEVAR ;; 94.287 0.0015544 3111740000 684010 813660 884360 306192 1200670 769130 933180 978110 718730 727690 TRUE FALSE FALSE 636064.4312 749182.6183 1226807.876 712830.4501 1050070.773 674242.5605 699688.4938 755415.705 781030.0951 545471.6875 1.166081477 1.373458303 2.249077091 1.306814756 1.925069251 1.236072515 1.282721926 1.384885269 1.431843509 1 19.05714479 -6.300935022 24.874328 1.292135979 1.610603104 0.224469218 0.311345208 849.050187 534728.6754 0.109270483 0.096368944 5.00E-07 6.300935022 0.318467125 ARS(ph)PINR ddPTM_HeLa_A486_30min_R1 2 ARSPINR 7 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ARS(1)PINR;ARS(1)PINR ; 62.463 0.0082175 264820000 78634 70249 76740 64412 70317 101358 75882 61114 80618 115591 TRUE FALSE FALSE 73122.16267 64682.2134 106455.7832 149954.3912 61497.18618 88853.48049 56895.521 47199.67631 87606.03315 86646.26123 0.843915959 0.746508995 1.228625236 1.730650452 0.709750026 1.025473912 0.656641385 0.544739907 1.011076899 1 16.40284988 ARS(ph)PQELDQGTGAALCFFNPLFPGDLGPTKR ddPTM_HeLa_A485_30min_R1 2 ARSPQELDQGTGAALCFFNPLFPGDLGPTKR 31 2 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 ARS(1)PQELDQGTGAALCFFNPLFPGDLGPTKR;ARS(1)PQELDQGTGAALCFFNPLFPGDLGPTKR ; 188.7 1.93E-21 234879000 85646 98302 90290 79216 119140 109691 128684 141225 85922 113812 TRUE FALSE FALSE 104697.6572 109797.5638 123692.0283 83543.36949 107278.0033 115434.2511 101189.6121 106589.3473 103165.7573 85440.76295 1.225382986 1.28507237 1.447693396 0.977792878 1.255583396 1.351044246 1.184324772 1.247523356 1.207453605 1 16.38263691 -13.23561114 0.258941612 3.53E-10 1.265291212 0.297057023 0.113655926 163.672001 2.326943023 86.35292997 0.155698102 5.81E-14 13.23561114 1.265291211 ARS(ph)PQELDQGTGAALCFFNPLFPGDLGPTKR ddPTM_HeLa_A486_30min_R1 1 ARSPQELDQGTGAALCFFNPLFPGDLGPTKR 31 2 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 ARS(0.997)PQELDQGT(0.003)GAALCFFNPLFPGDLGPTKR 82.266 0.0003104 130140000 20906 24391 16904 11850 24888 20645 28192 28951 15866 30816 TRUE FALSE FALSE 19440.59736 22458.16833 23449.6815 27587.39887 21766.31497 18098.0298 21138.06342 22359.4893 17241.27765 23099.47302 0.841603501 0.972237259 1.015160886 1.194286936 0.942286214 0.783482367 0.915088556 0.967965342 0.746392683 1 14.49557232 -5.997896178 24.99998506 0.880422729 1.012114811 0.226993301 0.106951357 99.56918207 1183162.623 0.033803818 0.038087929 1.00E-06 5.997896178 0.131692082 ARS(ph)PSVAAMASPQLCR ddPTM_HeLa_A485_30min_R1 12 ARSPSVAAMASPQLCR 16 1 P25325-2 P25325-2 1 0 ARS(0.981)PS(0.019)VAAMASPQLCR;ARS(0.98)PS(0.02)VAAMASPQLCR;ARS(0.992)PS(0.008)VAAMASPQLCR;ARS(0.981)PS(0.019)VAAMASPQLCR;ARS(1)PSVAAMASPQLCR;ARS(0.999)PS(0.001)VAAMASPQLCR;ARS(0.513)PS(0.487)VAAMASPQLCR;ARS(0.994)PS(0.006)VAAMASPQLCR;ARS(0.99)PS(0.01)VAAMASPQLCR;ARS(0.984)PS(0.016)VAAMASPQLCR;ARS(0.99)PS(0.01)VAAMASPQLCR;ARS(0.996)PS(0.004)VAAMASPQLCR ;;;;;;;;;;; 182.09 6.34E-18 14254300000 1294836 1633875 1827812 1431881 2103552 1755990 2192945 2480035 1568118 1942048 TRUE FALSE FALSE 1582867.801 1824942.468 2503995.72 1510101.033 1894114.977 1847930.921 1724404.386 1871802.528 1882824.899 1457931.174 1.085694461 1.251734307 1.717499265 1.035783485 1.299179968 1.267502166 1.182774891 1.283875783 1.291436065 1 20.47549118 -12.62072991 0.339425026 1.25E-08 1.283984091 0.175177755 0.173115348 247.2184535 5.120471746 174.9759393 0.1414882 2.39E-13 12.62072991 1.283984079 ARS(ph)PSVAAMASPQLCR ddPTM_HeLa_A486_30min_R1 10 ARSPSVAAMASPQLCR 16 1 P25325-2 P25325-2 1 0 ARS(0.989)PS(0.011)VAAMASPQLCR;ARS(0.998)PS(0.002)VAAMASPQLCR;ARS(1)PSVAAMASPQLCR;ARS(0.999)PS(0.001)VAAMASPQLCR;ARS(0.999)PS(0.001)VAAMASPQLCR;ARS(0.999)PS(0.001)VAAMASPQLCR;ARS(0.989)PS(0.011)VAAMASPQLCR;ARS(0.981)PS(0.019)VAAMASPQLCR;ARS(0.964)PS(0.036)VAAMASPQLCR;ARS(0.98)PS(0.02)VAAMASPQLCR ;;;;;;;;; 225.83 2.68E-34 14465020000 1846555 2412518 2505418 732457 3125192 2250839 2616813 2699012 2128754 2561966 TRUE FALSE FALSE 1717121.03 2221341.287 3475582.947 1705196.912 2733201.278 1973153.369 1962058.71 2084505.887 2313276.111 1920433.038 0.894132207 1.156687707 1.80979127 0.887923129 1.423221338 1.027452314 1.021675149 1.08543534 1.204559631 1 20.87300023 -6.29986475 24.70550091 1.070279832 1.242759523 0.097752788 0.252259067 1213.203563 780022.4878 0.088537788 0.078084261 5.01E-07 6.29986475 0.172479691 ARS(ph)PTDDKVK ddPTM_HeLa_A485_30min_R1 1 ARSPTDDKVK 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 ARS(0.975)PT(0.025)DDKVK 134.68 2.30E-05 900640000 1256000 1009700 463600 2020500 947100 1153200 1921000 1827700 869640 2564100 TRUE FALSE FALSE 1535392.867 1127775.632 635104.932 2130874.799 852803.3985 1213579.769 1510562.657 1379453.709 1044168.771 1924917.059 0.797641052 0.585882715 0.329938856 1.106995644 0.443033841 0.630458213 0.784741685 0.716630206 0.542448708 1 20.87636485 -11.05575566 2.680268819 1.480850587 0.65914688 0.201171591 0.203400946 17335030.55 8974918.188 50985109.91 0.049198275 8.80E-12 11.05575566 -0.821703708 ARS(ph)PTDDKVK ddPTM_HeLa_A486_30min_R1 1 ARSPTDDKVK 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 ARS(0.791)PT(0.209)DDKVK 51.135 0.029731 3653100000 641170 365100 293180 380120 335980 803110 843610 649790 507000 1006600 TRUE FALSE FALSE 596227.294 336168.1463 406707.1476 884938.5702 293838.2555 704030.4536 632529.8552 501847.0018 550947.1682 754540.8081 0.790185617 0.445526793 0.539012792 1.172817375 0.389426592 0.933058154 0.838297741 0.665102532 0.730175442 1 19.5252394 -13.9999997 0.068502328 1.882679089 0.390159136 0.132504519 0.220216813 676.5584927 3.337566106 97.13949831 12.61373279 1.00E-14 13.9999997 -1.492519953 ARS(ph)PTDDKVKIEDK ddPTM_HeLa_A485_30min_R1 4 ARSPTDDKVKIEDK 14 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 ARS(0.974)PT(0.026)DDKVKIEDK;ARS(0.921)PT(0.079)DDKVKIEDK;ARS(0.969)PT(0.031)DDKVKIEDK;ARS(0.975)PT(0.025)DDKVKIEDK ;;; 131.11 0.00010755 4199700000 1029740 990400 573237 2012860 2990320 2769490 6586530 9879800 1320600 3815420 TRUE FALSE FALSE 1258802.11 1106218.665 785301.2207 2122817.445 2692593.241 2914496.214 5179264.058 7456763.559 1585632.307 2864306.012 0.439478919 0.386208268 0.274168059 0.741128021 0.940050829 1.01752264 1.808209052 2.6033404 0.553583416 1 21.4497542 -6.097196507 1.333949814 1.587031644 0.395596437 0.423763761 0.520761724 0.372432798 1.357876828 0.229727141 0.23830557 7.99E-07 6.097196507 -1.191435206 ARS(ph)PTDDKVKIEDK ddPTM_HeLa_A486_30min_R1 4 ARSPTDDKVKIEDK 14 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 ARS(0.966)PT(0.034)DDKVKIEDK;ARS(0.972)PT(0.028)DDKVKIEDK;ARS(0.998)PT(0.002)DDKVKIEDK;ARS(0.948)PT(0.052)DDKVKIEDK ;;; 129.12 0.00012825 3508660000 1148710 768960 405304 1981800 1859710 1450670 3499580 3715430 515224 2930070 TRUE FALSE FALSE 1068191.361 708024.8091 562248.5632 4613730.555 1626447.831 1271701.085 2623948.069 2869507.696 559884.0312 2196361.4 0.4863459 0.322362617 0.255990914 2.100624494 0.74051922 0.579003567 1.194679559 1.306482483 0.254914347 1 21.06668403 ARS(ph)TPS(ph)PVLQPR ddPTM_HeLa_A486_30min_R1 1 ARSTPSPVLQPR 12 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 2 0 ARS(0.556)T(0.445)PS(0.999)PVLQPR 84.508 0.0038316 612670000 367890 445960 424960 142560 522150 373200 423110 424630 408030 424710 TRUE FALSE FALSE 342102.8108 410620.5054 589515.8928 331886.8846 456657.0781 327158.3784 317243.4028 327951.0186 443398.3689 318359.8516 1.074578999 1.289799902 1.85172813 1.042489758 1.434405362 1.027637049 0.996493123 1.030126811 1.392758436 1 18.28029888 -6.265253071 24.93035955 1.085479131 1.347945793 0.219957312 0.234252217 502.7731723 3286652.593 0.081410851 0.074471004 5.43E-07 6.265253071 0.262466662 ARS(ph)VS(ph)PPPK ddPTM_HeLa_A486_30min_R1 1 ARSVSPPPK 9 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 ARS(1)VS(1)PPPK 60.628 0.03354 2586500000 418050 482450 364570 238960 590430 529920 669490 678600 392430 598630 TRUE FALSE FALSE 388746.8538 444218.9049 505741.2675 556310.9564 516372.7639 464543.8582 501976.5209 524097.5937 426446.1484 448729.1516 0.866328502 0.989948844 1.127052401 1.239747751 1.150744858 1.035243324 1.118662603 1.167959763 0.950341975 1 18.77548539 -4.505833975 2.915842237 1.109704218 0.870604698 0.4436701 0.081221066 0.247135596 3.867470176 0.021452579 0.105093449 3.12E-05 4.505833975 -0.239099519 ARS(ph)VS(ph)PPPKR ddPTM_HeLa_A485_30min_R1 8 ARSVSPPPKR 10 2 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR ;;;;;;; 99.941 0.0011037 29484710000 1015718 1558518 1779242 1133290 1694656 2062876 1734607 2247477 1785713 1619760 TRUE FALSE FALSE 1241660.965 1740773.123 2437457.656 1195198.763 1525930.098 2170884.998 1363994.044 1696279.742 2144089.22 1215983.641 1.021116504 1.431576103 2.00451517 0.982906942 1.254893607 1.785291285 1.121720719 1.394985659 1.763254987 1 20.21369239 -11.0404399 2.815219601 0.455054906 1.419313894 0.129062322 0.325583415 107163535.8 87271613.85 374202032.6 0.081629693 9.11E-12 11.0404399 0.964258988 ARS(ph)VS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 5 ARSVSPPPKR 10 2 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR;ARS(1)VS(1)PPPKR ;;;; 111.12 0.00044866 12321460000 267900 336932 320293 136175 455751 310389 351200 398291 276345 335359 TRUE FALSE FALSE 249121.5934 310232.2812 444319.0273 317022.2819 398586.4599 272096.361 263326.0454 307608.8339 300298.8071 251382.9236 0.99100444 1.234102447 1.767498846 1.261113036 1.585574924 1.082397949 1.047509678 1.223666387 1.194587138 1 17.93952713 -6.289774863 24.71587019 1.119728684 1.376699774 0.284902008 0.203999737 892.9065593 778842.2205 0.073788727 0.065087756 5.13E-07 6.289774863 0.25697109 ARS(ph)VSPPPKR ddPTM_HeLa_A486_30min_R1 2 ARSVSPPPKR 10 2 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 ARS(0.97)VS(0.03)PPPKR;ARS(1)VSPPPKR ; 116.51 0.0001951 196192000 95922 109043 81786 40435 129854 104002 127629 134082 90646 119916 TRUE FALSE FALSE 89198.36314 100402.0356 113455.7295 94134.72347 113566.5005 91171.29065 95694.87428 103554.4556 98503.26826 89888.25308 0.992325027 1.116965033 1.262186388 1.047241661 1.263418707 1.014273696 1.064598221 1.152035467 1.095841391 1 16.45584497 ARSDEGQLS(ph)PATR ddPTM_HeLa_A485_30min_R1 4 ARSDEGQLSPATR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 ARSDEGQLS(1)PATR;ARSDEGQLS(1)PATR;ARSDEGQLS(0.994)PAT(0.006)R;ARSDEGQLS(0.98)PAT(0.02)R ;;; 162 1.20E-10 7077580000 1493720 2568485 2316597 1469010 2831714 2345330 2798261 3362970 2022573 2097221 TRUE FALSE FALSE 1825992.861 2868846.978 3173602.632 1549258.297 2549778.611 2468127.852 2200389.678 2538196.335 2428484.849 1574422.401 1.159785874 1.822158384 2.015725024 0.984016929 1.619500973 1.567640203 1.397585347 1.612144449 1.542460808 1 20.58639122 -10.01882696 3.44311631 0.999785093 1.534759568 0.237748714 0.281242833 25137150.03 42953440.98 66314.64364 0.070067335 9.58E-11 10.01882696 0.534974475 ARSDEGQLS(ph)PATR ddPTM_HeLa_A486_30min_R1 3 ARSDEGQLSPATR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 ARSDEGQLS(1)PATR;ARSDEGQLS(1)PATR;ARSDEGQLS(1)PATR ;; 152.11 2.39E-08 6382190000 3143530 3199350 2844380 1082596 4401300 2704149 3439770 3705240 2579937 3330792 TRUE FALSE FALSE 2923184.78 2945821.854 3945800.111 2520338.199 3849247.914 2370538.59 2579103.164 2861637.737 2803568.016 2496740.003 1.170800635 1.179867287 1.580380859 1.009451603 1.541709553 0.949453522 1.032988281 1.146149672 1.122891456 1 21.25161416 -6.286512705 24.99889717 1.058349173 1.28979614 0.34981264 0.167486703 930.7096591 927943.6431 0.056528939 0.049874356 5.17E-07 6.286512705 0.231446967 ARSMDSSDLS(ph)DGAVTLQEYLELKK ddPTM_HeLa_A485_30min_R1 1 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 ARS(0.08)MDS(0.178)S(0.059)DLS(0.681)DGAVT(0.002)LQEYLELKK 191.22 5.53E-21 123550000 51039 57679 43923 75193 95057 101420 139010 180580 76178 112190 TRUE FALSE FALSE 62392.44947 64424.05731 60171.94549 79300.60319 85592.79131 106730.1944 109309.3779 136292.4719 91466.22585 84223.0977 0.740799747 0.764921489 0.714435198 0.941554103 1.016262684 1.267231879 1.297855112 1.618231525 1.085999308 1 16.36192832 -5.884984533 1.407531887 1.30412552 0.742218013 0.657602054 0.158897965 0.224976549 0.927724264 0.061531164 0.076458119 1.30E-06 5.884984533 -0.561907507 ARSMDSSDLS(ph)DGAVTLQEYLELKK ddPTM_HeLa_A486_30min_R1 1 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 ARS(0.018)MDS(0.017)S(0.017)DLS(0.943)DGAVT(0.006)LQEYLELKK 106.65 0.0002475 159790000 66247 56839 34928 39034 79358 79217 105660 102410 49378 88151 TRUE FALSE FALSE 61603.4274 52334.87064 48453.057 90873.12467 69404.17966 69444.01196 79222.75044 79093.47859 53658.1248 66077.41583 0.932291716 0.792023568 0.733277117 1.375252399 1.050346458 1.05094927 1.198938388 1.196982019 0.812049384 1 16.01186965 -5.234937122 24.90461358 1.106282116 0.816480047 0.431375054 0.146338392 649.7352357 610566.212 0.038786676 0.067156566 5.82E-06 5.234937122 -0.289802069 ARST(ph)PS(ph)PVLQPR ddPTM_HeLa_A485_30min_R1 2 ARSTPSPVLQPR 12 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 2 0 ARS(0.45)T(0.551)PS(0.999)PVLQPR;ARS(0.446)T(0.554)PS(0.999)PVLQPR ; 75.018 0.0070044 520760000 509200 782240 789230 503780 826810 723160 791940 893380 683980 705270 TRUE FALSE FALSE 622469.7833 873716.1634 1081199.02 531300.2258 744489.8933 761023.5394 622735.5494 674277.1542 821248.5122 529459.1685 1.175670987 1.650204993 2.042081966 1.003477241 1.406132781 1.437360206 1.176172945 1.273520593 1.551108303 1 19.0141599 -5.276051295 24.99109748 1.284854299 1.625407935 0.288846951 0.256438776 1032.948915 1766674.117 0.071848697 0.107094757 5.30E-06 5.276051295 0.340553636 ART(ph)PLTAAQQK ddPTM_HeLa_A485_30min_R1 4 ARTPLTAAQQK 11 1 I3L2J0 I3L2J0 CIC 1 0 ART(1)PLTAAQQK;ART(0.999)PLT(0.001)AAQQK;ART(1)PLTAAQQK;ART(1)PLTAAQQK ;;; 157.35 2.73E-07 1529740000 1290150 1368060 1169520 1442370 1636810 1666660 1998560 2173420 1357270 2153350 TRUE FALSE FALSE 1577139.417 1528042.716 1602174.116 1521163.021 1473843.449 1753923.74 1571551.329 1640385.337 1629661.639 1616559.474 0.975614842 0.945243736 0.99110125 0.940987972 0.911716193 1.084973221 0.972158064 1.014738624 1.008104969 1 20.62449516 -6.243531461 24.99888617 1.014176341 0.9539625 0.476629191 0.033004699 770.1651416 1075127.1 0.010657175 0.010634068 5.71E-07 6.243531461 -0.060213842 ART(ph)PLTAAQQK ddPTM_HeLa_A486_30min_R1 4 ARTPLTAAQQK 11 1 I3L2J0 I3L2J0 CIC 1 0 ART(1)PLTAAQQK;ART(1)PLTAAQQK;ART(1)PLTAAQQK;ART(1)PLTAAQQK ;;; 169.4 4.58E-08 1111720000 1789700 1901660 1139280 682850 1859200 1855570 2095140 2046500 1483860 2104330 TRUE FALSE FALSE 1664251.272 1750965.536 1580439.727 1589709.309 1626001.8 1626648.639 1570913.812 1580556.625 1612482.18 1577392.071 1.055065068 1.110038251 1.001932085 1.007808609 1.030816516 1.031226585 0.995893057 1.002006193 1.022245648 1 20.58910987 -4.770091617 24.99999617 1.012269174 1.082551663 0.731436778 0.017218416 79.89191207 230843.5989 0.004432654 0.009470047 1.70E-05 4.770091617 0.070282489 ARTDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_A485_30min_R1 3 ARTDEVPAGGSRSEAEDEDDEDYVPYVPLR 30 2 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 2 0 ART(0.01)DEVPAGGS(0.996)RS(0.994)EAEDEDDEDYVPYVPLR;ART(0.27)DEVPAGGS(0.882)RS(0.848)EAEDEDDEDYVPYVPLR;ARTDEVPAGGS(1)RS(1)EAEDEDDEDYVPYVPLR ;; 155.11 4.75E-10 529820000 114661 173673 180363 132992 231582 203731 208148 256630 171087 184192 TRUE FALSE FALSE 140166.9439 193982.5466 247086.7792 140257.0162 208524.8829 214398.0401 163675.4794 193691.0901 205422.5916 138276.3242 1.013672765 1.402861609 1.786905898 1.014324159 1.508030273 1.550504335 1.18368405 1.400753826 1.485594825 1 17.07719463 -9.746003253 5.834979655 0.999999982 1.379001746 0.189706548 0.230099073 5.32E-08 1.10E-08 0.216123622 0.052417676 1.79E-10 9.746003253 0.379001764 ARTDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_A486_30min_R1 2 ARTDEVPAGGSRSEAEDEDDEDYVPYVPLR 30 2 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 2 0 ART(0.131)DEVPAGGS(0.946)RS(0.922)EAEDEDDEDYVPYVPLR;ART(0.046)DEVPAGGS(0.979)RS(0.975)EAEDEDDEDYVPYVPLR ; 108.6 9.51E-05 420200000 120754 137534 131080 56740 160275 117203 145822 141959 117822 142092 TRUE FALSE FALSE 112289.7682 126635.3049 181837.6864 132093.5875 140171.815 102743.6855 109335.7933 109638.0346 128034.9058 106511.2383 1.054252771 1.188938434 1.707215964 1.240184506 1.316028404 0.96462765 1.026518844 1.029356492 1.20207884 1 16.70064614 -6.25044992 23.85227169 1.045226302 1.314233318 0.371975128 0.166420136 440.2101595 955461.7794 0.057530763 0.056941731 5.62E-07 6.25044992 0.269007016 ARTSS(ph)FAEPGGGGGGGGGGPGGSASGPGGTGGGK ddPTM_HeLa_A485_30min_R1 1 ARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK 34 1 P49840 P49840 GSK3A Glycogen synthase kinase-3 alpha 1 0 ART(0.076)S(0.229)S(0.695)FAEPGGGGGGGGGGPGGSASGPGGTGGGK 152.05 5.66E-10 622520000 74199 165230 87543 72662 168830 227730 289020 498270 127300 129220 TRUE FALSE FALSE 90704.31157 184552.2112 119928.7987 76631.34107 152020.6924 239653.5907 227268.5159 376068.5012 152847.9423 97007.83212 0.935020499 1.902446505 1.236279546 0.789950042 1.5670971 2.470456101 2.342785226 3.876681841 1.575624761 1 16.56581361 -6.170132463 3.805736962 2.442079414 1.258930117 0.283024857 0.752067204 0.266992898 7.167976993 0.250288525 0.248470701 6.76E-07 6.170132463 -1.183149296 ARTSS(ph)FAEPGGGGGGGGGGPGGSASGPGGTGGGK ddPTM_HeLa_A486_30min_R1 1 ARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK 34 1 P49840 P49840 GSK3A Glycogen synthase kinase-3 alpha 1 0 ART(0.162)S(0.162)S(0.676)FAEPGGGGGGGGGGPGGSASGPGGTGGGK 93.339 6.55E-05 286880000 130380 86470 55625 53766 130820 75973 128400 150180 60944 161080 TRUE FALSE FALSE 121241.0353 79617.80228 77164.48969 125169.9652 114411.3358 66600.2237 96272.96192 115987.2924 66226.67499 120744.5195 1.004112118 0.659390609 0.639072398 1.036651317 0.947548892 0.551579682 0.797327798 0.960600886 0.548485971 1 16.88159818 ARTSST(ph)DEVLSLEEK ddPTM_HeLa_A485_30min_R1 1 ARTSSTDEVLSLEEK 15 1 K7ENH8;A0A0A0MRB7;P15923-2;K7EMM4 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 ART(0.16)S(0.16)S(0.16)T(0.521)DEVLSLEEK 172.66 2.84E-12 112860000 186420 238420 184800 229840 311400 296180 384190 405000 228260 300850 TRUE FALSE FALSE 227888.4859 266301.145 253165.2102 242395.5772 280395.9226 311687.5268 302104.668 305673.115 274069.6883 225853.6317 1.009009614 1.179087283 1.12092601 1.073241884 1.241493973 1.380042129 1.337612619 1.353412441 1.213483645 1 17.78502859 -5.868315057 4.829251441 1.286473408 1.103829381 0.317781183 0.109322879 0.21735463 8.33382814 0.032822535 0.037696702 1.35E-06 5.868315057 -0.182644026 ARVDHGAEIITQS(ph)PGR ddPTM_HeLa_A485_30min_R1 7 ARVDHGAEIITQSPGR 16 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 ARVDHGAEIIT(0.007)QS(0.993)PGR;ARVDHGAEIITQS(1)PGR;ARVDHGAEIIT(0.005)QS(0.995)PGR;ARVDHGAEIITQS(1)PGR;ARVDHGAEIIT(0.006)QS(0.994)PGR;ARVDHGAEIIT(0.008)QS(0.992)PGR;ARVDHGAEIIT(0.013)QS(0.987)PGR ;;;;;; 218.41 5.13E-34 14690510000 3628088 5465526 5380666 4017823 6628711 5179077 5967530 7532636 5471528 5227536 TRUE FALSE FALSE 4435143.659 6104671.722 7371198.262 4237306.497 5968733.258 5450245.463 4692518.465 5685245.21 6569613.482 3924407.481 1.130143514 1.555565204 1.878295844 1.079731531 1.520925971 1.388807225 1.195726613 1.448688812 1.674039588 1 21.90404342 -5.279048816 24.94221898 1.353246192 1.524757981 0.101576457 0.254452967 2025.399654 2868796.382 0.071060744 0.105660412 5.26E-06 5.279048816 0.171511789 ARVDHGAEIITQS(ph)PGR ddPTM_HeLa_A486_30min_R1 4 ARVDHGAEIITQSPGR 16 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 ARVDHGAEIIT(0.003)QS(0.997)PGR;ARVDHGAEIITQS(1)PGR;ARVDHGAEIITQS(1)PGR;ARVDHGAEIIT(0.012)QS(0.988)PGR ;;; 201.12 1.81E-25 6961790000 1841380 1919400 1718303 571587 2151600 1636412 1905243 2010093 1546148 2025387 TRUE FALSE FALSE 1712308.771 1767299.754 2383675.939 1330683.422 1881726.265 1434528.125 1428531.05 1552438.704 1680169.354 1518216.912 1.127841982 1.16406275 1.570049655 0.876477802 1.239431764 0.944876924 0.940926845 1.022540779 1.106672795 1 20.5339465 -5.285005558 24.98883936 1.022523217 1.274992698 0.418606655 0.144800356 763.0109446 809071.1564 0.040339158 0.059871142 5.19E-06 5.285005558 0.252469481 ARVDHGAEIITQS(ph)PGRS(ph)SVAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ARVDHGAEIITQSPGRSSVASPR 23 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 3 0 ARVDHGAEIIT(0.152)QS(0.848)PGRS(0.5)S(0.5)VAS(1)PR 117.94 7.99E-05 1524000000 255040 497520 390200 282190 482530 417480 516310 593330 409850 378270 TRUE FALSE FALSE 311772.7681 555700.6362 534551.2176 297605.3252 434487.6189 439338.6073 405996.1506 447814.8872 492103.1356 283974.2505 1.09789098 1.956869805 1.882393268 1.048001094 1.530024705 1.547107199 1.429693537 1.576955961 1.732914638 1 18.11540059 -10.35121105 5.226363694 0.999780225 1.54048821 0.2470523 0.279194404 0.000710497 8.82E-05 0.268637845 0.065128228 4.45E-11 10.35121105 0.540707985 ARVDHGAEIITQS(ph)PGRS(ph)SVAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ARVDHGAEIITQSPGRSSVASPR 23 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 3 0 ARVDHGAEIIT(0.177)QS(0.823)PGRS(0.501)S(0.501)VAS(0.998)PR 84.741 0.003045 256310000 236440 205090 152870 81566 231320 237510 275540 259730 181960 282970 TRUE FALSE FALSE 219866.777 188837.9215 212065.358 189889.7701 202305.6886 208208.431 206596.9776 200595.1489 197732.4393 212112.4702 1.036557524 0.890272605 0.999777891 0.895231525 0.953766124 0.981594485 0.973997321 0.945701819 0.932205632 1 17.69446991 -6.019464229 24.48250546 0.964197641 0.950285431 0.010068626 0.04423904 3126.950258 3933144.81 0.01369809 0.013906174 9.56E-07 6.019464229 -0.01391221 ARVS(ph)GDDFSVPSK ddPTM_HeLa_A485_30min_R1 1 ARVSGDDFSVPSK 13 1 Q15361 Q15361 TTF1 Transcription termination factor 1 1 0 ARVS(1)GDDFSVPSK 62.589 0.0050671 0 175450 187750 178110 213880 251590 201300 259640 252420 176680 276640 TRUE FALSE FALSE 214478.2472 209705.7293 244000.3008 225563.7228 226540.8162 211839.7567 204165.7929 190513.5992 212138.0554 207678.7392 1.032740511 1.00976022 1.174893019 1.08611851 1.090823341 1.020035838 0.983084709 0.91734763 1.021472185 1 17.663994 -6.506134829 2.709489332 0.973553033 1.08070401 0.485953319 0.047608096 0.23873472 3.526232894 0.020305888 0.016166524 3.12E-07 6.506134829 0.107150977 ARVS(ph)SGYVPPPVATPFSSK ddPTM_HeLa_A485_30min_R1 2 ARVSSGYVPPPVATPFSSK 19 1 Q15942;Q15942-2;H7C3R3 Q15942 ZYX Zyxin 1 0 ARVS(0.676)S(0.315)GY(0.009)VPPPVATPFSSK;ARVS(0.928)S(0.072)GYVPPPVATPFSSK ; 150.03 7.40E-09 1796770000 1382200 1594090 1332810 1380230 2250390 1689850 1967610 2458300 1569950 1977550 TRUE FALSE FALSE 1689665.621 1780504.959 1825871.882 1455628.47 2026333.27 1778327.933 1547214.05 1855398.071 1885024.565 1484583.179 1.138141429 1.199329875 1.229888569 0.980496405 1.364917304 1.197863453 1.042187512 1.249777107 1.269733209 1 20.5016265 -10.12751758 4.887393856 0.999989945 1.184748965 0.21935994 0.10514225 1.13E-05 2.01E-06 0.099586222 0.024151892 7.46E-11 10.12751758 0.18475902 ARVS(ph)SGYVPPPVATPFSSK ddPTM_HeLa_A486_30min_R1 1 ARVSSGYVPPPVATPFSSK 19 1 Q15942;Q15942-2;H7C3R3 Q15942 ZYX Zyxin 1 0 ARVS(0.775)S(0.152)GY(0.073)VPPPVATPFSSK 115.63 1.68E-05 1055800000 590430 746890 610400 300390 909590 682890 893280 922960 572510 696330 TRUE FALSE FALSE 549043.906 687703.7163 846763.2271 699323.1009 795500.7406 598641.9749 669771.8958 712822.1561 622135.6278 521964.4357 1.051879915 1.317529834 1.622262302 1.339790708 1.524051614 1.146901846 1.283175347 1.365652729 1.191911911 1 18.99359199 -6.277070443 24.85278683 1.225734601 1.380340341 0.205694638 0.165482955 1443.805342 2295587.401 0.059275381 0.052469038 5.28E-07 6.277070443 0.15460574 ARVSSGY(ph)VPPPVATPFSSK ddPTM_HeLa_A486_30min_R1 1 ARVSSGYVPPPVATPFSSK 19 1 Q15942;Q15942-2;H7C3R3 Q15942 ZYX Zyxin 1 0 ARVS(0.312)S(0.312)GY(0.377)VPPPVATPFSSK 128.32 3.29E-06 1244900000 493010 606360 580150 239040 749220 596850 700760 694380 481930 567780 TRUE FALSE FALSE 458452.5449 558309.8253 804799.617 556497.2004 655245.8414 523216.7153 525422.4361 536284.8322 523704.0804 425604.1924 1.077180519 1.311805277 1.890957917 1.307546332 1.539566229 1.229350473 1.234533037 1.260055333 1.230495587 1 18.69915284 -6.348789006 6.644896506 1.207794437 1.43804031 0.241269643 0.206405656 0.40706845 26.11596925 0.074920625 0.06594996 4.48E-07 6.348789006 0.230245873 ARVT(ph)PTLPK ddPTM_HeLa_A486_30min_R1 2 ARVTPTLPK 9 1 H0Y3N9;Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y589;Q9UPP1-5 H0Y3N9 PHF8 Histone lysine demethylase PHF8 1 0 ARVT(0.973)PT(0.027)LPK;ARVT(0.998)PT(0.002)LPK ; 67.456 0.019727 644470000 391030 433430 300310 161666 430530 407580 463310 479620 339610 515630 TRUE FALSE FALSE 363620.8163 399083.4283 416598.0746 376366.6181 376528.9129 357296.9236 347384.9376 370420.996 369047.6682 386512.8918 0.940772802 1.032522942 1.077837463 0.973749197 0.974169092 0.9244114 0.898766755 0.958366471 0.954813348 1 18.56015701 -5.688368296 2.484587097 0.943576022 1.018355491 0.3195405 0.041010699 0.29992882 3.776899592 0.013472311 0.017898612 2.05E-06 5.688368296 0.074779469 ARVVNTDHGS(ph)PEQLQIPVTDSGR ddPTM_HeLa_A485_30min_R1 1 ARVVNTDHGSPEQLQIPVTDSGR 23 1 Q6IQ49-3;Q6IQ49-2;Q6IQ49 Q6IQ49-3 SDE2 Protein SDE2 homolog 1 0 ARVVNT(0.002)DHGS(0.998)PEQLQIPVTDSGR 70.983 0.0001357 0 22472 51070 37667 69938 60433 57882 79889 115920 38536 76714 TRUE FALSE FALSE 27470.81887 57042.19225 51601.59075 73758.53585 54416.07833 60912.61202 62820.06252 87490.43824 46269.82173 57590.61162 0.477001687 0.990477278 0.896006993 1.280738887 0.94487759 1.05768302 1.090803879 1.519178835 0.803426469 1 15.81354602 -4.054471389 1.332655899 1.105523547 3.49E-17 0.46131254 0.192189765 1.837963167 2.035543033 0.053660162 3.125425519 8.82E-05 4.054471389 -1.105523547 AS(ph)APERTPS(ph)PAPK ddPTM_HeLa_A486_30min_R1 1 ASAPERTPSPAPK 13 1 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 2 0 AS(0.893)APERT(0.295)PS(0.812)PAPK 164.77 3.07E-11 180350000 493250 522270 322740 227150 541350 517230 626710 594690 393860 610750 TRUE FALSE FALSE 458675.7221 480883.4231 447713.5713 528816.6795 473448.8351 453419.4214 469900.5293 459292.069 428000.1019 457814.2247 1.001881762 1.050389868 0.977937222 1.155090102 1.034150556 0.990400466 1.02640002 1.003228044 0.934877247 1 18.80440276 -6.993048914 1.188431944 0.973537018 1.04281219 0.227976378 0.048325022 0.752236881 2.002760267 0.037382899 0.017436165 1.02E-07 6.993048914 0.069275172 AS(ph)ASPDRIPSLPQETVDQEPK ddPTM_HeLa_A485_30min_R1 1 ASASPDRIPSLPQETVDQEPK 21 1 A0A494C1R1;A0A2R8Y5U1;Q76L82;Q8IXJ9 A0A494C1R1 ASXH1;ASXL1 Putative Polycomb group protein ASXL1 1 0 AS(0.562)AS(0.438)PDRIPSLPQETVDQEPK 99.387 0.00023072 647350000 71358 65041 54559 102730 71642 64908 107390 93159 51006 130540 TRUE FALSE FALSE 87231.34092 72646.97917 74742.64449 108341.8798 64509.07093 68306.48251 84445.2492 70311.60918 61242.43635 97998.78041 0.890126801 0.741304931 0.762689537 1.105543144 0.658264018 0.697013598 0.86169694 0.717474329 0.624930597 1 16.58047617 AS(ph)DKDITVSK ddPTM_HeLa_A485_30min_R1 4 ASDKDITVSK 10 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 AS(1)DKDITVSK;AS(1)DKDITVSK;AS(1)DKDITVSK;AS(1)DKDITVSK ;;; 141.46 1.72E-05 2778970000 3569670 2308440 1313540 5205730 2613970 2677930 4138920 3357050 2285120 6481800 TRUE FALSE FALSE 4363730.776 2578391.977 1799473.107 5490105.848 2353713.969 2818142.274 3254605.93 2533728.224 2743722.624 4866006.549 0.896778648 0.529878444 0.369804909 1.128256979 0.483705467 0.579148886 0.668845366 0.520699715 0.563855103 1 22.21430683 -10.92124994 3.471194004 1.195866903 0.632448833 0.211613276 0.20944728 0.137278276 0.003114396 0.087689199 0.047725608 1.20E-11 10.92124994 -0.56341807 AS(ph)DKDITVSK ddPTM_HeLa_A486_30min_R1 4 ASDKDITVSK 10 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 AS(1)DKDITVSK;AS(1)DKDITVSK;AS(1)DKDITVSK;AS(1)DKDITVSK ;;; 196.33 2.83E-11 3029840000 5208120 4179180 1349030 2144310 2493180 4811620 5732100 4862640 3115800 8319500 TRUE FALSE FALSE 4843057.683 3848006.556 1871410.544 4992062.047 2180462.116 4218011.245 4297867.952 3755523.023 3385880.053 6236243.049 0.77659861 0.617039222 0.30008621 0.8004919 0.349643543 0.676370567 0.689175826 0.602209214 0.542935871 1 22.57224573 -10.90862335 2.605712033 1.236295716 0.591137333 0.379467583 0.155321716 111694944.6 58545687.91 161269730 0.038206438 1.23E-11 10.90862335 -0.645158383 AS(ph)DLEDEESAAR ddPTM_HeLa_A485_30min_R1 3 ASDLEDEESAAR 12 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR ;; 285.31 3.31E-41 2478260000 1583580 1247910 1274020 2035990 1591880 1156390 1534840 1072170 1331620 2354690 TRUE FALSE FALSE 1935841.908 1393842.219 1745333.014 2147210.978 1433386.838 1216936.792 1206908.896 809218.6264 1598863.92 1767709.118 1.09511338 0.788502025 0.98734175 1.214685695 0.810872571 0.688425929 0.682753109 0.457778159 0.904483607 1 20.75344946 -5.98745299 23.58178122 0.71334176 1.003645815 0.365105339 0.168829556 117.6757921 221165.609 0.051615763 0.058478524 1.03E-06 5.98745299 0.290304055 AS(ph)DLEDEESAAR ddPTM_HeLa_A486_30min_R1 4 ASDLEDEESAAR 12 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR;AS(1)DLEDEESAAR ;;; 333.45 3.25E-73 4798990000 2339000 2721710 1749290 741058 2037040 2632120 2431720 2239980 2186540 2575710 TRUE FALSE FALSE 2175048.179 2506031.787 2426661.936 1725220.475 1781535.449 2307395.796 1823277.936 1729985.452 2376071.048 1930735.451 1.126538686 1.297967459 1.256858848 0.893556118 0.922723746 1.19508646 0.94434374 0.896024078 1.230655938 1 20.88071907 -5.246258072 24.87146046 1.008556177 1.23420627 0.413632621 0.11736479 719.9321594 1179459.629 0.031603674 0.054459951 5.67E-06 5.246258072 0.225650093 AS(ph)DPGLPAEEPK ddPTM_HeLa_A485_30min_R1 4 ASDPGLPAEEPK 12 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK ;;; 197.79 5.74E-17 3783400000 3986500 2261760 1843550 7077100 2990750 2338990 3928920 2336940 2334700 7823700 TRUE FALSE FALSE 4873283.172 2526253.157 2525555.862 7463704.053 2692980.429 2461455.9 3089474.146 1763801.801 2803252.875 5873395.575 0.8297216 0.430118 0.429999279 1.270764749 0.458504862 0.419085667 0.52601159 0.300303594 0.477279768 1 22.48576338 AS(ph)DPGLPAEEPK ddPTM_HeLa_A486_30min_R1 4 ASDPGLPAEEPK 12 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK ;;; 210.64 1.56E-17 4991220000 4305080 4994100 2250160 2223300 3395540 5766500 6606900 5440200 4089210 7097000 TRUE FALSE FALSE 4003316.123 4598349.328 3121482.213 5175954.759 2969639.711 5055087.859 4953783.739 4201585.219 4443666.015 5319865.006 0.752522126 0.864373311 0.586759666 0.972948515 0.558217118 0.950228597 0.931185986 0.789791698 0.835296762 1 22.34295821 AS(ph)DPGLPAEEPKEK ddPTM_HeLa_A486_30min_R1 2 ASDPGLPAEEPKEK 14 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 AS(1)DPGLPAEEPKEK;AS(1)DPGLPAEEPKEK ; 149.52 2.99E-08 1571550000 765470 809050 436760 898530 1241950 1338940 2163060 1985240 618980 1492430 TRUE FALSE FALSE 711814.5059 744937.9315 605885.1688 2091823.249 1086173.05 1173755.196 1621839.509 1533244.189 672633.6848 1118715.814 0.636278219 0.665886655 0.541589885 1.869843282 0.970910607 1.049198717 1.449733247 1.37053948 0.601255186 1 20.09341217 -5.153255527 20.59876385 1.19972509 0.619656285 0.402153077 0.319747051 7.164576314 1355.442644 0.084545148 0.146437233 7.03E-06 5.153255527 -0.580068806 AS(ph)DSVFQPK ddPTM_HeLa_A485_30min_R1 2 ASDSVFQPK 9 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 AS(0.958)DS(0.042)VFQPK;AS(0.995)DS(0.005)VFQPK ; 122.74 0.00033126 142980000 386910 372953 276803 417290 427050 396334 514620 466330 296297 511620 TRUE FALSE FALSE 472976.7947 416566.6091 379203.9484 440085.4961 384531.4025 417085.4354 404667.2329 351961.8363 355761.0901 384082.5497 1.231445675 1.084575723 0.98729804 1.145809661 1.001168636 1.085926543 1.053594425 0.916370287 0.926262051 1 18.55105689 -1 0.281011338 0.965919217 2.654893555 0.518704786 0.064384326 46.54599429 0.656752916 0.074983045 38.6527394 0.1 1 1.688974338 AS(ph)DSVFQPK ddPTM_HeLa_A486_30min_R1 1 ASDSVFQPK 9 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 AS(1)DSVFQPK 131.82 0.00036935 0 155830 146510 89247 72400 147550 160800 201660 194530 136200 203410 TRUE FALSE FALSE 144907.1217 134900.014 123805.8285 168550.8589 129042.9032 140962.1309 151202.5351 150239.7656 148005.9257 152474.812 0.950367604 0.884736385 0.81197561 1.105434115 0.846322756 0.924494538 0.991655822 0.985341537 0.970690986 1 17.21821141 -6.563866553 0.483856192 1.001380531 0.900300062 0.138187978 0.074670857 2.097350979 1.060251282 0.07240309 0.07769018 2.73E-07 6.563866553 -0.101080469 AS(ph)ES(ph)SSEEKDDYEIFVK ddPTM_HeLa_A485_30min_R1 1 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 2 0 AS(0.5)ES(0.5)S(0.5)S(0.5)EEKDDY(0.001)EIFVK 62.646 0.02162 53946000 108120 76205 53107 210630 130720 111880 189960 166470 90577 288770 TRUE FALSE FALSE 132170.921 85116.51185 72753.48927 222136.1836 117705.0578 117737.8638 149373.4942 125642.9715 108754.9731 216784.9534 0.609686784 0.392631087 0.335602117 1.024684509 0.542957691 0.543109021 0.689039953 0.579574226 0.501672147 1 17.7259051 -11.4022766 2.248272042 4.360124782 0.581307973 0.335742586 0.177267993 7770150.928 735617.9275 133066258.4 0.045948164 3.96E-12 11.4022766 -3.778816809 AS(ph)FDER ddPTM_HeLa_A486_30min_R1 1 ASFDER 6 0 C9J5X1;P08069 C9J5X1 IGF1R Tyrosine-protein kinase receptor;Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain 1 0 AS(1)FDER 77.058 0.02361 320580000 687500 812050 759550 274370 1068500 971450 886730 850510 943010 1247800 TRUE FALSE FALSE 639309.8003 747700.2006 1053668.101 638747.2259 934478.7666 851602.376 664860.7751 656867.4395 1024750.866 935342.7582 0.683503234 0.799386315 1.126504794 0.682901771 0.999076283 0.910470914 0.710820466 0.702274577 1.095588603 1 19.83513561 -7.776344185 24.99401225 1.047794437 0.835799179 0.276513418 0.142358622 375.6247931 629870.2165 0.135371929 0.035527313 1.67E-08 7.776344185 -0.211995258 AS(ph)GEMASAQYITAALR ddPTM_HeLa_A485_30min_R1 2 ASGEMASAQYITAALR 16 0 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR ; 230.05 2.65E-34 320860000 98750 86174 94466 135775 135347 72881 103188 78126 107871 193505 TRUE FALSE FALSE 120716.5968 96251.29969 129412.9045 143192.0444 121871.3774 76696.93646 81141.04083 58965.476 129519.7202 145267.7647 0.830993697 0.662578514 0.890857684 0.985711075 0.838943022 0.527969413 0.558561915 0.405908882 0.891592987 1 17.14835508 -6.23908432 22.03858356 0.632285686 0.842577869 0.151633081 0.180383723 260.0430132 256360.5379 0.058569403 0.058492126 5.77E-07 6.23908432 0.210292183 AS(ph)GEMASAQYITAALR ddPTM_HeLa_A486_30min_R1 3 ASGEMASAQYITAALR 16 0 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR;AS(1)GEMASAQYITAALR ;; 223.5 7.11E-34 446562000 112739 154658 123103 48835 142156 181197 161953 141150 133251 124482 TRUE FALSE FALSE 104836.5783 142402.3368 170771.7784 113690.348 124325.4689 158842.7564 121430.6464 109013.2263 144801.304 93310.89696 1.123519136 1.526106183 1.830137572 1.218403763 1.332378886 1.70229589 1.301355473 1.168279695 1.551815583 1 16.50975795 -10.58381144 0.322007519 0.666852955 1.457783266 0.233731336 0.222613976 36.01385998 2.201813923 9.805236707 0.212799439 2.61E-11 10.58381144 0.790930311 AS(ph)GQAFELILS(ph)PR ddPTM_HeLa_A485_30min_R1 5 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 0 AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR ;;;; 132.13 3.68E-05 472747000 268695 341173 306144 286010 418608 287544 339229 377235 276967 356699 TRUE FALSE FALSE 328465.2758 381070.2145 419399.4053 301634.0021 376929.9177 302599.3592 266749.9529 284717.5248 332551.7364 267780.5039 1.226621322 1.423069301 1.566205901 1.126422565 1.407607769 1.130027597 0.996151509 1.063249642 1.241881808 1 18.0306914 -6.35523393 4.713865768 1.078911915 1.353408652 0.520681276 0.127039991 0.190323671 7.106510784 0.04610167 0.040492672 4.41E-07 6.35523393 0.274496738 AS(ph)GQAFELILS(ph)PR ddPTM_HeLa_A486_30min_R1 3 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 0 AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR ;; 167.53 1.24E-11 535728000 367618 388577 304512 154351 421499 346900 381353 399511 312089 375941 TRUE FALSE FALSE 341849.8766 357784.7433 422427.2015 359336.9285 368630.6651 304103.005 285934.4459 308551.0666 339141.1258 281802.9266 1.213081357 1.269627493 1.499016375 1.275135545 1.308115105 1.079133594 1.014661023 1.094917893 1.20346914 1 18.10432707 -6.252576489 6.054838162 1.079766746 1.319679592 0.649299598 0.086142981 0.105096415 17.21877374 0.030484675 0.029010374 5.59E-07 6.252576489 0.239912846 AS(ph)GQAFELILSPR ddPTM_HeLa_A485_30min_R1 6 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR ;;;;; 256.53 3.14E-41 2446005000 857041 789906 587593 997970 1007537 852823 1276051 1313104 758369 1294260 TRUE FALSE FALSE 1047686.814 882278.6354 804968.1025 1052486.574 907223.0786 897475.4936 1003412.279 991063.1851 910566.7021 971624.8011 1.078283317 0.908044581 0.828476282 1.083223249 0.933717498 0.923685246 1.032715796 1.02000606 0.937158769 1 19.89003979 -6.759991029 24.99998308 0.999137324 0.955443281 0.056764684 0.075279707 118.4787435 2045132.972 0.030079969 0.022011508 1.74E-07 6.759991029 -0.043694043 AS(ph)GQAFELILSPR ddPTM_HeLa_A486_30min_R1 6 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR ;;;;; 278.68 1.15E-48 3446264000 766288 835632 630995 298373 811614 711671 810759 820495 615167 643204 TRUE FALSE FALSE 712575.1683 769413.477 875333.1626 694627.4229 709813.8041 623872.2678 607898.5229 633686.1998 668490.1709 482141.5318 1.477937745 1.595824931 1.815510809 1.440712689 1.472210455 1.293960853 1.260830032 1.314315731 1.386501943 1 18.87909718 -5.958183657 1.45528294 1.263250905 1.618537178 0.606730713 0.12878643 0.285099667 1.24477393 0.051432179 0.059636065 1.10E-06 5.958183657 0.355286274 AS(ph)GVAVSDGVIK ddPTM_HeLa_A485_30min_R1 5 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.998)GVAVS(0.002)DGVIK ;;;; 221.86 5.06E-23 2317300000 3414061 3238335 2528718 3955070 4011222 3637469 5413390 5050810 2847911 5075990 TRUE FALSE FALSE 4173507.091 3617030.108 3464196.017 4171125.459 3611850.653 3827921.252 4256775.003 3812090.928 3419460.615 3810639.11 1.095224966 0.949192512 0.909085305 1.094599971 0.947833303 1.004535235 1.117076396 1.000380991 0.897345699 1 21.86160155 -4.243414136 23.60902351 0.994801859 1.095225151 0.172540183 0.067966832 3421.129524 4480763.33 0.017203815 0.487699069 5.71E-05 4.243414136 0.100423291 AS(ph)GVAVSDGVIK ddPTM_HeLa_A486_30min_R1 4 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK ;;; 222.55 4.77E-23 3269380000 4083740 4658670 2692480 1886630 4688280 4834630 5793140 5615700 3530670 5091920 TRUE FALSE FALSE 3797490.914 4289500.023 3735080.363 4392169.985 4100232.206 4238182.506 4343635.098 4337127.7 3836711.318 3816870.089 0.994922758 1.123826571 0.97857152 1.150725564 1.074239393 1.110381649 1.138009677 1.136304773 1.005198298 1 21.86395865 -5.266757088 24.99849654 1.095979729 1.041578912 0.132744006 0.061183802 839.8370709 3948056.485 0.016225449 0.024900574 5.41E-06 5.266757088 -0.054400817 AS(ph)HS(ph)SERPPPR ddPTM_HeLa_A485_30min_R1 1 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 AS(0.998)HS(0.835)S(0.167)ERPPPR 58.116 0.037094 897270000 292870 301500 262420 356710 254880 308420 350190 346720 235340 349540 TRUE FALSE FALSE 358017.9211 336757.8023 359500.0782 376196.1641 229503.2523 324568.3943 275369.0457 261686.3764 282570.5793 262406.1108 1.364365792 1.283345884 1.370014125 1.433641019 0.874610929 1.236893429 1.049400278 0.997257173 1.076844508 1 18.00144179 -5.749889821 24.99947004 1.049428482 1.35767579 0.751015396 0.091166739 111.8322448 242064.0826 0.026397468 0.033786099 1.78E-06 5.749889821 0.308247308 AS(ph)HSS(ph)ERPPPR ddPTM_HeLa_A485_30min_R1 1 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 AS(1)HS(0.024)S(0.976)ERPPPR 109.44 0.00064327 942800000 256240 308850 263520 262950 245750 299810 321910 313490 213220 292340 TRUE FALSE FALSE 313239.704 344967.3209 361007.014 277314.2927 221282.2671 315507.588 253131.2987 236606.086 256011.2982 219465.0181 1.427287623 1.571855614 1.644941035 1.263592235 1.008280358 1.437621315 1.15340158 1.078103873 1.166524398 1 17.74363147 -5.406488675 4.676710348 1.158167356 1.547586641 0.675171843 0.125752471 0.135358606 4.602262725 0.036009056 0.054068369 3.92E-06 5.406488675 0.389419286 AS(ph)HSS(ph)ERPPPR ddPTM_HeLa_A486_30min_R1 2 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 AS(1)HS(0.016)S(0.984)ERPPPR;AS(0.999)HS(0.242)S(0.759)ERPPPR ; 94.673 0.002358 1702920000 1247720 1670280 1080560 494280 1143990 1210610 1280120 1147370 1206760 1410040 TRUE FALSE FALSE 1160261.271 1537920.93 1498981.77 1150708.82 1000500.107 1061257.247 959820.4363 886138.8979 1311362.928 1056956.806 1.097737641 1.455046148 1.418205325 1.088699948 0.946585614 1.0040687 0.90809807 0.838387049 1.240696801 1 20.01148499 -5.431993075 4.094846189 0.980182288 1.334470928 0.559714426 0.131917171 0.157525031 4.726182226 0.037652888 0.056475844 3.70E-06 5.431993075 0.35428864 AS(ph)HSSERPPPR ddPTM_HeLa_A485_30min_R1 4 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 AS(0.978)HS(0.021)SERPPPR;AS(0.999)HS(0.001)SERPPPR;AS(0.998)HS(0.002)SERPPPR;AS(1)HSSERPPPR ;;; 176.25 4.61E-09 328112000 113363 235153 220314 57816.9 182522 144442 140154 147286 145176 95926.3 TRUE FALSE FALSE 138580.2083 262652.0978 301817.3166 60975.29085 164349.4688 152004.7598 110208.9529 111163.8776 174311.4916 72013.6388 1.924360587 3.647254911 4.191113262 0.846718647 2.282199199 2.110777379 1.530390004 1.543650334 2.420534422 1 16.13598255 -5.261618859 24.99999994 1.736242792 3.293544106 0.503588357 0.71587571 13.24809447 1845457.921 0.19557005 0.312133711 5.47E-06 5.261618859 1.557301314 AS(ph)HSSERPPPR ddPTM_HeLa_A486_30min_R1 4 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 AS(0.921)HS(0.078)S(0.001)ERPPPR;AS(1)HSSERPPPR;AS(0.997)HS(0.003)SERPPPR;AS(0.871)HS(0.113)S(0.016)ERPPPR ;;; 205.86 3.69E-15 713905000 304404.9 299972 312201.8 90492.3 288295.3 251404.6 232788.5 206707.6 265635.4 269523.3 TRUE FALSE FALSE 283067.6885 276201.1262 433094.698 210670.6476 252134.6152 220388.8565 174542.3551 159644.7919 288660.8904 202032.9114 1.401096913 1.367109568 2.143683893 1.042754105 1.247987833 1.090856213 0.863930307 0.790192008 1.428781521 1 17.6242308 -5.321327141 24.99043331 1.057769281 1.610278917 0.502492089 0.259821339 199.4549289 83229.62815 0.073404566 0.1088766 4.77E-06 5.321327141 0.552509636 AS(ph)LADALPLHIAPR ddPTM_HeLa_A485_30min_R1 1 ASLADALPLHIAPR 14 0 H3BRB6;Q8ND25;Q8ND25-2 H3BRB6 ZNRF1 E3 ubiquitin-protein ligase ZNRF1 1 0 AS(1)LADALPLHIAPR 149.3 4.59E-08 29705000 21661 19452 17708 23749 20916 21552 28887 24925 16104 34177 TRUE FALSE FALSE 26479.41472 21726.74219 24258.92609 25046.34773 18833.5296 22680.42939 22715.05646 18812.10467 19335.92509 25657.30288 1.032042021 0.846805383 0.945497904 0.976187866 0.734041676 0.883975588 0.885325187 0.733206633 0.753622669 1 14.6470819 -5.743709108 24.99863225 0.823651117 0.942421647 0.297604892 0.088306079 310.8328082 438253.9645 0.025526483 0.032882161 1.80E-06 5.743709108 0.11877053 AS(ph)LADALPLHIAPR ddPTM_HeLa_A486_30min_R1 2 ASLADALPLHIAPR 14 0 H3BRB6;Q8ND25;Q8ND25-2 H3BRB6 ZNRF1 E3 ubiquitin-protein ligase ZNRF1 1 0 AS(1)LADALPLHIAPR;AS(1)LADALPLHIAPR ; 145.55 6.21E-08 60817000 50715 94514 80083 28013.8 87775 85259 94475 99561 76281 78530 TRUE FALSE FALSE 47160.14039 87024.36643 111093.2823 65217.54214 76765.44103 74740.61143 70836.35575 76893.1337 82893.0985 58865.57686 0.80114972 1.47835749 1.88723679 1.107906278 1.304080332 1.269682817 1.20335788 1.306249557 1.408176101 1 15.84513661 AS(ph)LEDAPVDDLTR ddPTM_HeLa_A485_30min_R1 3 ASLEDAPVDDLTR 13 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR ;; 186.13 3.01E-17 1434330000 1208207 1197065 1200121 1422620 1798152 1126431 1537063 1469088 1353496 1883840 TRUE FALSE FALSE 1476968.479 1337051.339 1644095.699 1500334.128 1619121.673 1185409.185 1208656.933 1108791.865 1625130.232 1414233.358 1.044359809 0.945424835 1.162534945 1.060881587 1.14487589 0.838199141 0.854637551 0.784023272 1.149124523 1 20.43158876 -6.262886833 24.96740293 0.907288393 1.069059587 0.301691633 0.109666841 151.6280456 2615439.193 0.037296967 0.034676148 5.46E-07 6.262886833 0.161771194 AS(ph)LEDAPVDDLTR ddPTM_HeLa_A486_30min_R1 4 ASLEDAPVDDLTR 13 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR ;;; 276.32 1.41E-48 1521870000 1336214 1695977 1249392 399606 1544149 1577782 1643925 1590483 1500468 1300848 TRUE FALSE FALSE 1242552.299 1561581.606 1733190.042 930302.963 1350467.434 1383131.299 1232597.577 1228364.741 1630529.774 975107.1937 1.274272518 1.601446093 1.777435397 0.954051994 1.38494254 1.418440257 1.264063669 1.259722776 1.67215439 1 19.8952013 -10.98410482 2.777704241 0.641939839 1.396461518 0.220387556 0.225979003 158581782.5 144455638 365101826.3 0.058479879 1.04E-11 10.98410482 0.754521679 AS(ph)LGS(ph)LEGEAEAEAS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 3 0 AS(1)LGS(1)LEGEAEAEAS(0.55)S(0.45)PK 109.89 1.64E-06 0 101780 61476 51482 160390 88517 63928 101110 69328 60133 197240 TRUE FALSE FALSE 124420.6099 68665.08343 70527.33414 169151.6996 79703.93668 67275.17123 79507.02251 52325.1993 72201.14153 148071.6979 0.84027273 0.463728615 0.476305298 1.142363476 0.538279346 0.454341864 0.536949489 0.353377452 0.487609331 1 17.17593639 -10.04283968 4.737226581 1.000009294 0.583677304 0.238407683 0.220709557 72240774.4 76574606.23 7533.649105 0.055206543 9.06E-11 10.04283968 -0.41633199 AS(ph)LGS(ph)LEGEAEAEASS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 3 0 AS(1)LGS(1)LEGEAEAEAS(0.148)S(0.852)PK 223.19 1.44E-34 51666000 128460 122540 49546 86110 89474 138600 159640 141520 100900 247600 TRUE FALSE FALSE 119455.6174 112829.4841 68731.53809 200468.4318 78251.33661 121500.9412 119696.3835 109298.9854 109646.0932 185599.3484 0.643620888 0.607919613 0.370322087 1.080113877 0.421614285 0.65464099 0.644918124 0.588897463 0.590767663 1 17.50183212 -11.11524336 2.337954178 1.701570439 0.622849158 0.287563994 0.17823874 34075873.76 9079122.563 126996510.3 0.042176461 7.67E-12 11.11524336 -1.078721281 AS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_HeLa_A485_30min_R1 2 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK ; 141.3 3.29E-07 246778000 616710 392465 283539 744340 432650 461670 601130 495880 361438 1024690 TRUE FALSE FALSE 753895.0119 438360.3678 388431.8751 785001.4094 389573.8469 485842.3273 472693.6647 374264.6525 433975.2913 769253.641 0.980034376 0.569851535 0.504946424 1.02047149 0.506430943 0.631576247 0.614483493 0.486529582 0.564151105 1 19.55309984 -10.40108022 5.308380204 1.000234148 0.646168097 0.246110498 0.181739388 0.00049385 5.57E-05 0.172549641 0.041822105 3.97E-11 10.40108022 -0.354066051 AS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_HeLa_A486_30min_R1 4 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK ;;; 332.61 3.03E-101 551640000 1889580 2074950 945060 942950 1524800 2399960 2521200 2164590 1759150 3044000 TRUE FALSE FALSE 1757130.2 1910523.405 1311012.542 2195235.254 1333545.366 2103877.336 1890369.093 1671760.11 1911634.538 2281762.587 0.770075822 0.837301574 0.574561328 0.962078731 0.584436511 0.922040421 0.828468792 0.732661724 0.837788537 1 21.12171726 -14 0.207619281 2.043993819 0.749706085 0.243590542 0.11901772 202.7926676 2.0186776 87.8429014 0.245331973 1.00E-14 14 -1.294287734 AS(ph)LGSLEGEAEAEASSPK ddPTM_HeLa_A485_30min_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 AS(0.566)LGS(0.434)LEGEAEAEASSPK 144.72 3.75E-08 154910000 297400 269410 191530 364130 360410 317440 429830 464720 300530 557980 TRUE FALSE FALSE 363555.604 300915.1559 262384.9172 384021.4999 324526.3149 334060.6675 337993.3091 350746.6913 360843.6144 418885.8549 0.867910911 0.718370297 0.626387628 0.916768841 0.774736867 0.797498086 0.806886423 0.837332384 0.861436619 1 18.67619764 -8.738305762 0.329942345 1.043551557 0.755589137 0.444105811 0.073284828 3.612035284 0.681544689 0.306870349 0.079148805 1.83E-09 8.738305762 -0.287962419 AS(ph)LGTLPLGKPR ddPTM_HeLa_A485_30min_R1 1 ASLGTLPLGKPR 12 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 AS(1)LGTLPLGKPR 110.98 0.00019498 482700000 246130 252410 230980 283830 340290 246680 329270 371340 230240 377620 TRUE FALSE FALSE 300880.7694 281927.1538 316429.1139 299334.9142 306409.5328 259595.7834 258918.7746 280268.2828 276447.0561 283486.2836 1.06135918 0.994500158 1.116206082 1.055906164 1.080861934 0.915726081 0.913337927 0.988648478 0.975169072 1 18.11291941 -6.255062425 24.99512032 0.955039442 1.060728501 0.643133627 0.03838456 334.5378472 1311256.17 0.013164753 0.01286404 5.56E-07 6.255062425 0.105689059 AS(ph)LGTLPLGKPR ddPTM_HeLa_A486_30min_R1 2 ASLGTLPLGKPR 12 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 AS(1)LGTLPLGKPR;AS(0.99)LGT(0.01)LPLGKPR ; 128.76 1.62E-05 769900000 416496 474586 410155 302302 586308 546005 601206 696152 322990.9 568898 TRUE FALSE FALSE 387301.7812 436978.0769 568978.0003 703774.3335 512767.7835 478644.4545 450777.8999 537653.3865 350988.0113 426442.2379 0.908216276 1.024706368 1.334244007 1.650339181 1.202431978 1.122413335 1.057066725 1.260788305 0.823061086 1 18.70199081 -6.383122265 3.075564742 1.059851333 1.24264531 0.147926897 0.208642228 0.605231599 10.90981001 0.086855629 0.074929465 4.14E-07 6.383122265 0.182793977 AS(ph)LLTDEEDVDMALDQR ddPTM_HeLa_A486_30min_R1 1 ASLLTDEEDVDMALDQR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 AS(0.547)LLT(0.453)DEEDVDMALDQR 76.391 0.0037809 3468600 5123 4863.8 5031.8 2813.5 6594.3 6004.2 4511.8 7256.7 4452.3 5116.7 TRUE FALSE FALSE 4763.904155 4478.374774 6980.247716 6549.970186 5767.181405 5263.46285 3382.899919 5604.507823 4838.228949 3835.445016 1.24207338 1.167628464 1.819931634 1.707747122 1.503653782 1.37232129 0.882009755 1.46124056 1.261451782 1 11.90517826 -6.530729563 24.79796261 1.180691234 1.4947193 0.320660886 0.230028749 237.724884 750879.7607 0.093548061 0.072601826 2.95E-07 6.530729563 0.314028065 AS(ph)LSDLTDLEDIEGLTVR ddPTM_HeLa_A485_30min_R1 2 ASLSDLTDLEDIEGLTVR 18 0 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 AS(0.998)LS(0.002)DLTDLEDIEGLTVR;AS(0.995)LS(0.005)DLTDLEDIEGLTVR ; 121.19 2.69E-05 28055000 21542 20495.8 16761.1 25743 17291 18905.7 29192 24745 17636.7 40385 TRUE FALSE FALSE 26333.94358 22892.60552 22961.72838 27149.27491 15569.44733 19895.57322 22954.89072 18676.24995 21176.22392 30317.76273 0.868597852 0.755088881 0.757368826 0.895490711 0.513542093 0.656234874 0.757143293 0.616016759 0.698475811 1 14.88787567 -5.729541367 24.99986836 0.687681328 0.810149691 0.151204248 0.124679806 331.5343736 259836.5919 0.034897174 0.045048235 1.86E-06 5.729541367 0.122468363 AS(ph)LSDLTDLEDIEGLTVR ddPTM_HeLa_A486_30min_R1 1 ASLSDLTDLEDIEGLTVR 18 0 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 AS(1)LSDLTDLEDIEGLTVR 269.51 1.03E-58 11643000 15353 14169 12774 6417.6 14533 18926 16685 14761 16144 20672 TRUE FALSE FALSE 14276.83398 13046.19684 17720.4349 14940.49713 12710.13563 16591.10255 12510.23652 11400.24253 17543.37492 15495.59665 0.921347807 0.8419293 1.143578741 0.964176951 0.82024177 1.070697884 0.807341389 0.735708523 1.13215227 1 13.91957069 -5.554284098 24.94832105 0.913481448 0.972521188 0.014309454 0.134356094 748.2930831 594437.932 0.039505875 0.051002366 2.79E-06 5.554284098 0.059039739 AS(ph)LSSAPVVLVGDHA ddPTM_HeLa_A486_30min_R1 1 ASLSSAPVVLVGDHA 15 0 Q9HBH9 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 0 AS(0.976)LS(0.012)S(0.012)APVVLVGDHA 65.895 0.014904 67315000 39192 53624 49468 17575 66360 50449 51460 56000 44334 53254 TRUE FALSE FALSE 36444.84319 49374.63894 68623.3344 40915.48819 58036.51002 44225.11531 38584.16371 43250.02247 48176.90682 39918.85177 0.912973234 1.236875229 1.719070849 1.02496656 1.453862209 1.107875436 0.966564969 1.08344856 1.206871057 1 15.2847826 -6.495321079 22.33324334 1.066324471 1.279294852 0.175453495 0.214230715 334.2481501 270881.2837 0.075711677 0.066522554 3.20E-07 6.495321079 0.21297038 AS(ph)NPDLR ddPTM_HeLa_A486_30min_R1 2 ASNPDLR 7 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 AS(1)NPDLR;AS(1)NPDLR ; 94.409 0.005821 915570000 1743070 2069540 1581390 715830 2179910 1974970 2199180 1966680 2013810 2249330 TRUE FALSE FALSE 1620889.794 1905542.113 2193746.559 1666488.416 1906485.361 1731318.281 1648921.903 1518909.896 2188368.672 1686083.127 0.961334449 1.130159055 1.301090393 0.988378562 1.130718486 1.026828543 0.977960029 0.900851133 1.297900819 1 20.68524424 -5.916464916 1.67867975 1.033819009 1.119023104 0.038977475 0.129661947 1.078309225 6.235933989 0.048876581 0.057712087 1.21E-06 5.916464916 0.085204095 AS(ph)NPDLRR ddPTM_HeLa_A485_30min_R1 3 ASNPDLRR 8 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 AS(1)NPDLRR;AS(1)NPDLRR;AS(1)NPDLRR ;; 103.21 0.00098988 1185430000 670490 810520 736660 664270 922960 868740 929300 918910 684920 974470 TRUE FALSE FALSE 819638.1873 905303.2634 1009181.189 700557.3881 831066.8617 914225.8831 730747.4633 693545.8817 822377.1615 731552.5628 1.120409153 1.237509524 1.379506054 0.957630967 1.136031646 1.24970635 0.998899465 0.948046548 1.12415321 1 19.480602 -6.319821586 0.626672763 1.006371563 1.22115431 0.262905541 0.116146383 1.111936964 0.947368548 0.097410777 0.10043537 4.79E-07 6.319821586 0.214782747 AS(ph)NPDLRR ddPTM_HeLa_A486_30min_R1 4 ASNPDLRR 8 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 AS(1)NPDLRR;AS(1)NPDLRR;AS(1)NPDLRR;AS(1)NPDLRR ;;; 93.839 0.0019363 1015110000 1033200 1168540 962460 368815 1386730 976200 1178530 1177920 983980 1202150 TRUE FALSE FALSE 960778.0155 1075940.635 1335150.288 858619.9589 1212793.393 855766.3693 883649.3288 909733.3298 1069272.179 901123.8153 1.066199782 1.193998667 1.481650207 0.95283239 1.345867651 0.949665689 0.980608118 1.009554197 1.186598512 1 19.78136582 -6.274001566 24.95543893 1.023090116 1.208340413 0.280807185 0.146271405 1013.686309 2013734.499 0.050349888 0.044711725 5.32E-07 6.274001566 0.185250297 AS(ph)PAAAEEVVPEWASCLK ddPTM_HeLa_A486_30min_R1 2 ASPAAAEEVVPEWASCLK 18 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AS(1)PAAAEEVVPEWASCLK;AS(1)PAAAEEVVPEWASCLK ; 120.29 3.36E-05 64508000 45271 73402 55522 23324 60117 68409 65507 83317 49695 60474 TRUE FALSE FALSE 42097.73668 67585.35819 77021.60533 54299.45073 52576.56529 59969.39311 49116.45574 64347.5379 54002.60261 45330.91678 0.928676049 1.490932966 1.699096573 1.197845854 1.159839002 1.32292478 1.083508987 1.419506652 1.191297385 1 15.46820772 AS(ph)PAFDYAEFEPHIVPSTK ddPTM_HeLa_A486_30min_R1 2 ASPAFDYAEFEPHIVPSTK 19 0 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 AS(1)PAFDYAEFEPHIVPSTK;AS(1)PAFDYAEFEPHIVPSTK ; 138.35 7.96E-07 128645000 95017 118086 84535 32561 142360 129775 148095 135218 107282 132766 TRUE FALSE FALSE 88356.79897 108728.4353 117269.2159 75803.65354 124503.8813 113764.68 111040.0646 104431.8132 116581.2901 99520.52944 0.887824848 1.092522678 1.178341962 0.761688608 1.251037168 1.143127761 1.115750341 1.049349454 1.171429561 1 16.60270654 AS(ph)PALVAK ddPTM_HeLa_A485_30min_R1 2 ASPALVAK 8 0 Q92783-2;Q92783;A6NMU3 Q92783-2 STAM Signal transducing adapter molecule 1 1 0 AS(1)PALVAK;AS(1)PALVAK ; 94.087 0.0032568 254670000 907920 857010 769160 1129170 1201950 888010 1065590 977470 948050 1477100 TRUE FALSE FALSE 1109883.672 957229.8645 1053704.291 1190853.698 1082279.638 934504.8305 837917.9914 737743.9499 1138314.939 1108886.154 1.000899567 0.863235474 0.950236675 1.073918809 0.976006088 0.842741906 0.755639331 0.665301796 1.02653905 1 20.08067983 -6.281471301 6.269887791 0.830095549 0.971314792 0.19029776 0.111269564 0.242360155 39.06507488 0.038852255 0.035311741 5.23E-07 6.281471301 0.141219243 AS(ph)PALVAK ddPTM_HeLa_A486_30min_R1 1 ASPALVAK 8 0 Q92783-2;Q92783;A6NMU3 Q92783-2 STAM Signal transducing adapter molecule 1 1 0 AS(1)PALVAK 120.45 0.00075452 111990000 419630 513460 314340 163190 539800 539090 530640 552170 393200 517760 TRUE FALSE FALSE 390216.104 472771.5596 436060.8663 379914.5672 472093.2506 472582.5569 397868.2595 426452.9448 427282.8926 388109.5259 1.005427793 1.218139541 1.123551052 0.978884933 1.216391815 1.217652558 1.025144277 1.098795356 1.100933793 1 18.56610432 -8.530504964 0.736267092 0.999070736 1.119563991 0.135277099 0.083741273 3.670716108 3.226850955 0.095117169 0.030689988 2.95E-09 8.530504964 0.120493254 AS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_HeLa_A485_30min_R1 6 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 0 AS(0.708)PAPGS(0.292)GHPEGPGAHLDMNSLDR;AS(0.996)PAPGS(0.004)GHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(0.998)PAPGS(0.002)GHPEGPGAHLDMNSLDR;AS(0.712)PAPGS(0.288)GHPEGPGAHLDMNSLDR ;;;;; 270.28 1.00E-62 25201710000 962363 1351037 1006901 1095769 1093411 1329179 1435826 1441133 1115711 2299527 TRUE FALSE FALSE 1176437.329 1509029.025 1379395.581 1155628.086 984547.1616 1398772.757 1129050.045 1087692.872 1339623.964 1726297.239 0.681480166 0.87414206 0.799048709 0.669425902 0.570323082 0.810273414 0.65402992 0.630072764 0.776010025 1 20.71924946 -8.024870441 22.44151578 1.000000004 0.714053544 0.495419036 0.087451403 529.7422873 478006.7579 0.089055976 0.022994154 9.44E-09 8.024870441 -0.285946461 AS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_HeLa_A486_30min_R1 8 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 0 AS(0.819)PAPGS(0.181)GHPEGPGAHLDMNSLDR;AS(0.72)PAPGS(0.279)GHPEGPGAHLDMNSLDR;AS(0.988)PAPGS(0.012)GHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(1)PAPGSGHPEGPGAHLDMNSLDR;AS(0.991)PAPGS(0.009)GHPEGPGAHLDMNSLDR;AS(0.982)PAPGS(0.018)GHPEGPGAHLDMNSLDR ;;;;;;; 297.36 1.69E-89 15797500000 1233417 1469300 1402265 287245.2 1790541 1263962 1545775 1467111 1843773 1408397 TRUE FALSE FALSE 1146960.838 1352867.317 1945259.562 668721.3422 1565954.652 1108027.219 1159005.745 1133081.852 2003592.728 1055725.224 1.086419848 1.281457794 1.842581306 0.633423666 1.483297563 1.049541296 1.09782898 1.073273449 1.897835424 1 20.00980296 -4.255825354 21.20538053 1.258052025 1.08641923 0.019884598 0.369096652 413.6589328 1562023.237 0.087575092 0.69425664 5.55E-05 4.255825354 -0.171632795 AS(ph)PATPAGHPVSGLLLR ddPTM_HeLa_A485_30min_R1 3 ASPATPAGHPVSGLLLR 17 0 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 AS(0.972)PAT(0.028)PAGHPVSGLLLR;AS(0.993)PAT(0.007)PAGHPVSGLLLR;AS(0.998)PAT(0.002)PAGHPVSGLLLR ;; 143.04 6.22E-08 934710000 451553 604343 563416 411630 680503 548809 628452 648329 507682 624952 TRUE FALSE FALSE 551999.407 675015.6568 771847.0241 434116.3046 612749.7319 577543.7906 494178.0962 489325.2962 609569.1207 469162.9678 1.176562186 1.438765851 1.645157604 0.925299596 1.306048802 1.231008904 1.053318634 1.042975106 1.29926947 1 18.83972962 -5.263224566 24.99998732 1.133629712 1.422022271 0.422637239 0.159026568 157.4857443 2205462.27 0.04400638 0.069278314 5.45E-06 5.263224566 0.28839256 AS(ph)PATPAGHPVSGLLLR ddPTM_HeLa_A486_30min_R1 2 ASPATPAGHPVSGLLLR 17 0 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 AS(0.998)PAT(0.002)PAGHPVSGLLLR;AS(0.995)PAT(0.005)PAGHPVSGLLLR ; 181.64 1.02E-17 894100000 486910 497390 418180 95692 524600 441000 491100 447310 416700 407250 TRUE FALSE FALSE 452780.1234 457975.0049 580110.4952 222775.812 458799.7763 386593.9038 368221.5857 345467.2777 452819.8915 305271.9492 1.483202517 1.500219742 1.90030724 0.729761816 1.502921501 1.266391834 1.206208388 1.13167056 1.483332788 1 18.2197355 -1.000000003 0.18627287 1.079969637 3.3672128 0.187769047 0.27895895 93.55727821 1.077888612 0.58319941 61.1874679 0.099999999 1.000000003 2.287243164 AS(ph)PCSFSER ddPTM_HeLa_A485_30min_R1 3 ASPCSFSER 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AS(0.997)PCS(0.003)FSER;AS(0.977)PCS(0.023)FSER;AS(0.999)PCS(0.001)FSER ;; 140.05 0.00013761 1308240000 347889 472130 402653 379158 553060 491400 521410 555730 402866 521500 TRUE FALSE FALSE 425275.7078 527341.4965 551611.1005 399870.4415 497995.4045 517128.9442 410006.494 419436.3461 483717.5109 391499.6475 1.08627354 1.346978215 1.408969597 1.021381358 1.272020058 1.32089249 1.047271681 1.071358171 1.23555031 1 18.57865148 -7.664551976 0.369708565 0.997670747 1.26816396 0.209608482 0.128054416 1.923933961 0.803725526 0.19558896 0.138816281 2.16E-08 7.664551976 0.270493213 AS(ph)PCSFSER ddPTM_HeLa_A486_30min_R1 2 ASPCSFSER 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AS(0.761)PCS(0.239)FSER;AS(1)PCSFSER ; 135.87 0.00018273 967770000 344840 423180 387740 120324 505470 341820 357640 386000 347040 370940 TRUE FALSE FALSE 320668.4968 389645.6756 537883.312 280120.3528 442069.2393 299649.7238 268154.6893 298116.2263 377121.7066 278054.2096 1.153258918 1.401329892 1.934454842 1.007430721 1.589867098 1.077666561 0.964397157 1.072151458 1.356288427 1 18.08500665 -6.279679597 24.05277922 1.09050366 1.422346654 0.292665596 0.251109533 660.9179824 871527.5799 0.087673092 0.077486589 5.25E-07 6.279679597 0.331842994 AS(ph)PDSSSCGER ddPTM_HeLa_A486_30min_R1 1 ASPDSSSCGER 11 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 0 AS(0.998)PDS(0.001)S(0.001)SCGER 101.57 0.0011753 83246000 156250 208550 301500 64578 352590 165220 185230 192220 237690 130110 TRUE FALSE FALSE 145297.6819 192023.7385 418248.8745 150340.8476 308364.8744 144836.8362 138883.4948 148455.7021 258293.1606 97529.60913 1.489780213 1.968876326 4.288429721 1.541489287 3.161756488 1.485055026 1.424013652 1.522160331 2.64835636 1 16.57355265 -6.284748033 24.44929397 1.636558031 2.508321807 0.205542897 0.858435333 1019.693905 1069589.88 0.299762773 0.264539818 5.19E-07 6.284748033 0.871763776 AS(ph)PEARPQIPTKPR ddPTM_HeLa_A485_30min_R1 1 ASPEARPQIPTKPR 14 2 Q8N3F8;B0QY86 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 AS(1)PEARPQIPTKPR 58.671 0.023313 222630000 128020 105790 91644 157910 148380 118550 165850 141810 119170 193780 TRUE FALSE FALSE 156497.6073 118161.2202 125546.9292 166536.2235 133606.7662 124757.0947 130414.7926 107030.8752 143086.3259 145474.2123 1.075775596 0.812248566 0.86301845 1.144781751 0.918422338 0.857589072 0.896480487 0.735737788 0.983585501 1 17.15040391 -5.997276 24.99926242 0.879355998 0.964121494 0.090936496 0.111894585 200.9082094 1843778.363 0.034853716 0.039300148 1.01E-06 5.997276 0.084765496 AS(ph)PEPEGEAAGK ddPTM_HeLa_A485_30min_R1 1 ASPEPEGEAAGK 12 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 AS(1)PEPEGEAAGK 205.87 4.28E-22 0 279940 209830 212210 406670 363060 316940 398510 359200 236520 509090 TRUE FALSE FALSE 342211.6872 234367.7932 290715.3098 428885.3524 326912.4716 333534.4883 313365.083 271105.6368 283987.3945 382183.2321 0.895412615 0.613234107 0.760669975 1.122198245 0.855381514 0.872708325 0.819934148 0.709360364 0.743066076 1 18.54390496 -11.46584322 2.18575057 2.862396279 0.82145244 0.147953012 0.128630186 21250638.67 1652475.106 195957275.4 0.035004858 3.42E-12 11.46584322 -2.040943839 AS(ph)PEPELQLRPYQMEVAQPALEGK ddPTM_HeLa_A485_30min_R1 2 ASPEPELQLRPYQMEVAQPALEGK 24 1 A0A3B3IRK8;Q9BYX4 A0A3B3IRK8 IFIH1 Interferon-induced helicase C domain-containing protein 1 1 0 AS(1)PEPELQLRPYQMEVAQPALEGK;AS(0.997)PEPELQLRPY(0.003)QMEVAQPALEGK ; 139.81 2.78E-07 391180000 119768 111655 92828 142003 141537 122924 164800 151871 98408 188414 TRUE FALSE FALSE 146409.9784 124712.081 127168.9401 149760.2643 127445.0793 129360.1106 129589.1337 114624.3991 118157.5829 141445.8573 1.035095557 0.881694829 0.899064437 1.058781552 0.901016698 0.914555668 0.916174826 0.810376502 0.835355557 1 17.1098904 -6.507160227 1.58692649 0.872294286 0.95510661 0.155932529 0.071240452 0.644385707 3.276924417 0.034722247 0.026043628 3.11E-07 6.507160227 0.082812324 AS(ph)PEPELQLRPYQMEVAQPALEGK ddPTM_HeLa_A486_30min_R1 1 ASPEPELQLRPYQMEVAQPALEGK 24 1 A0A3B3IRK8;Q9BYX4 A0A3B3IRK8 IFIH1 Interferon-induced helicase C domain-containing protein 1 1 0 AS(1)PEPELQLRPYQMEVAQPALEGK 145.29 1.66E-09 275770000 77329 83139 54642 40078 83707 111190 109800 118420 72111 118860 TRUE FALSE FALSE 71908.63643 76550.76285 75800.84576 93303.60943 73207.68752 97472.5083 82326.87865 91458.35109 78361.63954 89096.68235 0.807085455 0.85918758 0.850770688 1.04721755 0.821665696 1.094008281 0.924017331 1.026506809 0.879512429 1 16.44308409 -5.146273799 7.162071026 0.968379171 0.838792598 0.380191317 0.076961561 0.262208627 14.66209605 0.019373712 0.0338212 7.14E-06 5.146273799 -0.129586573 AS(ph)PEPPDSAEGALK ddPTM_HeLa_A485_30min_R1 2 ASPEPPDSAEGALK 14 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 AS(1)PEPPDSAEGALK;AS(1)PEPPDSAEGALK ; 168.93 4.48E-12 238590000 369410 281320 288000 543320 430150 282470 487600 331860 308240 716650 TRUE FALSE FALSE 451583.9801 314217.9268 394543.1847 573000.1958 387322.7557 297259.6924 383420.2767 250470.8147 370100.9407 538002.344 0.839371771 0.584045647 0.733348449 1.065051486 0.719927636 0.552524902 0.712673989 0.465557107 0.687916967 1 19.03725293 AS(ph)PEPPDSAEGALK ddPTM_HeLa_A486_30min_R1 2 ASPEPPDSAEGALK 14 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 AS(0.999)PEPPDS(0.001)AEGALK;AS(1)PEPPDSAEGALK ; 136.81 8.37E-06 308550000 392480 508800 277560 217690 501500 553640 714710 634350 373490 563320 TRUE FALSE FALSE 364969.1788 468480.835 385038.6653 506793.3214 438597.1937 485337.5258 535881.9986 489922.3528 405864.4139 422261.0054 0.864321294 1.109457963 0.911849923 1.200189729 1.038687419 1.149378038 1.269077636 1.160235841 0.961169534 1 18.6877755 -5.258504635 24.99808721 1.123066397 0.97663455 0.287147129 0.105957676 334.8147099 2851927.683 0.028723355 0.047086321 5.51E-06 5.258504635 -0.146431847 AS(ph)PEPPGPESSSR ddPTM_HeLa_A485_30min_R1 4 ASPEPPGPESSSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR ;;; 264.75 1.35E-41 18705520000 3016160 3582690 3169970 3540510 3833540 3613260 4266860 4236690 3436050 4705140 TRUE FALSE FALSE 3687094.386 4001654.43 4342673.816 3733919.096 3451859.297 3802444.706 3355210.504 3197635.135 4125633.718 3532235.19 1.0438417 1.132895805 1.229440732 1.057098097 0.977245034 1.076498167 0.949883098 0.90527243 1.167995192 1 21.75214998 -5.510132824 17.02996671 1.008939106 1.136498434 0.32436945 0.079005316 10.15653174 13568.87496 0.022468609 0.031461217 3.09E-06 5.510132824 0.127559329 AS(ph)PEPPGPESSSR ddPTM_HeLa_A486_30min_R1 4 ASPEPPGPESSSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR;AS(1)PEPPGPESSSR ;;; 257.47 2.93E-41 22299010000 3652930 4200120 3268908 1369660 4090910 3788547 4073185 4058689 3559224 4299012 TRUE FALSE FALSE 3396878.471 3867287.195 4534716.722 3188637.699 3577789.922 3321154.59 3054031.031 3134614.115 3867740.402 3222511.413 1.054109058 1.200084871 1.407199585 0.989488411 1.110248953 1.030610652 0.947717677 0.972723976 1.200225509 1 21.61975404 -5.297996823 24.97679254 1.033931099 1.218426706 0.392373961 0.10524579 565.722381 386511.9011 0.029951408 0.044426715 5.04E-06 5.297996823 0.184495608 AS(ph)PEPQR ddPTM_HeLa_A485_30min_R1 2 ASPEPQR 7 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AS(1)PEPQR;AS(1)PEPQR ; 83.783 0.0083947 0 1196780 1166830 539730 1668210 512400 876260 904490 941360 951570 1769050 TRUE FALSE FALSE 1462999.582 1303280.618 739398.587 1759340.088 461383.6569 922139.6186 711238.3225 710489.984 1142541.371 1328058.392 1.101607874 0.981342858 0.556751564 1.324746034 0.347412177 0.694351712 0.535547478 0.534983995 0.86030959 1 20.34088715 -4.135463724 0.674836856 0.673236152 1.437148374 0.159653712 0.268484393 5.953520152 1.836992874 0.115197488 3.633895384 7.32E-05 4.135463724 0.763912222 AS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 3 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AS(1)PEPQRENASPAPGTTAEEAMSR;AS(1)PEPQRENASPAPGTTAEEAMSR;AS(0.999)PEPQRENAS(0.001)PAPGTTAEEAMSR ;; 138.9 4.33E-07 2872670000 44258.3 56013 80367.8 34333.4 77119 70025 69123 93392.7 55116.4 55249 TRUE FALSE FALSE 54103.40615 62563.2331 110099.1936 36208.94671 69440.76158 73691.40072 54354.30637 70487.99389 66177.75592 41476.44108 1.304437043 1.508404084 2.654499536 0.873000329 1.674221794 1.776705011 1.310486265 1.69947064 1.595550491 1 15.34000449 -11.54144371 0.37919324 1.76E-09 1.629538015 0.146682285 0.432324116 140.6798378 5.970858489 116.2946564 0.293764485 2.87E-12 11.54144371 1.629538013 AS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_HeLa_A486_30min_R1 2 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AS(1)PEPQRENASPAPGTTAEEAMSR;AS(1)PEPQRENASPAPGTTAEEAMSR ; 166.97 2.18E-14 2178630000 81348 94830 81089 30820.2 120002 92646 93354 112924 79003 93112 TRUE FALSE FALSE 75645.92528 87315.32544 112488.8324 71750.98317 104950.2302 81216.27848 69995.8418 87213.67031 85851.04365 69796.14914 1.083812305 1.251004912 1.611676773 1.028007763 1.503667917 1.163621195 1.002861084 1.249548455 1.230025506 1 16.09085982 -6.496447841 24.54955368 1.133095388 1.299624394 0.179821672 0.178705588 1070.50206 994305.4967 0.061650333 0.054175833 3.19E-07 6.496447841 0.166529006 AS(ph)PGLLPVANGNSLNK ddPTM_HeLa_A485_30min_R1 4 ASPGLLPVANGNSLNK 16 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK ;;; 309.15 4.32E-78 2409710000 1577440 1589830 1251140 1412910 1590450 1689540 1884910 2174480 1226450 2003340 TRUE FALSE FALSE 1928336.086 1775746.789 1713988.75 1490093.696 1432099.214 1778001.702 1482183.58 1641185.371 1472587.265 1503944.207 1.28218592 1.180726506 1.139662457 0.990790542 0.95222895 1.182225839 0.985530962 1.091254159 0.979150196 1 20.52031962 -4.781280346 1.768058162 1.032363767 1.26937878 0.616161356 0.06641413 0.276336329 1.575659061 0.018915623 0.078949932 1.65E-05 4.781280346 0.237015013 AS(ph)PGLLPVANGNSLNK ddPTM_HeLa_A486_30min_R1 4 ASPGLLPVANGNSLNK 16 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK ;;; 260.09 1.14E-50 1820060000 2422520 2693860 1490540 777420 2546250 2049390 2435630 2234300 1785990 2375580 TRUE FALSE FALSE 2252713.858 2480388.723 2067717.006 1809873.049 2226875.582 1796557.098 1826209.613 1725598.664 1940801.051 1780719.306 1.265058368 1.392913928 1.161169534 1.016371891 1.250548346 1.008894042 1.025546029 0.969045856 1.089897237 1 20.76402869 -4.970619273 0.661619862 1.017895222 1.407244307 0.608127235 0.084987696 1.023652028 0.613138342 0.044359883 0.265547272 1.07E-05 4.970619273 0.389349084 AS(ph)PHATPSTLHFPTS(ph)PIIQQPGPYFSHPAIR ddPTM_HeLa_A486_30min_R1 1 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIR 31 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;B1AKN6 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 2 0 AS(0.956)PHAT(0.029)PS(0.008)T(0.009)LHFPT(0.29)S(0.708)PIIQQPGPYFSHPAIR 156.72 1.87E-10 183790000 28791 21695 20982 5864.7 31746 18059 22650 26108 17404 11736 TRUE FALSE FALSE 26772.89958 19975.80919 29106.79232 13653.31799 27764.12066 15831.06419 16982.73043 20163.77833 18912.59273 8797.229211 3.043333183 2.270693273 3.3086318 1.552002074 3.156007419 1.799551178 1.930463561 2.29206013 2.149835167 1 13.10283349 -8.813027701 0.135384274 3.10E-13 3.387982264 0.464137088 0.514394751 15.00522688 0.770411088 12.49942038 5.626682274 1.54E-09 8.813027701 3.387982264 AS(ph)PHDVLETIFVR ddPTM_HeLa_A485_30min_R1 4 ASPHDVLETIFVR 13 0 O75143-4;O75143-3;O75143-2;O75143;O75143-5;H0YEM7;H0YCL5 O75143-4 ATG13 Autophagy-related protein 13 1 0 AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR ;;; 208.39 6.56E-22 151914000 119845.5 138430.1 124564.2 129550.9 137716.9 105741.4 117930.3 99897.9 116067.7 163190.3 TRUE FALSE FALSE 146504.718 154618.296 170645.6811 136627.9376 124005.3219 111277.8562 92733.528 75397.78339 139361.4228 122509.9615 1.195859636 1.262087541 1.392912699 1.115239414 1.012206031 0.9083168 0.756946838 0.615442063 1.137551763 1 16.90253954 -5.814227764 1.703564784 0.851045521 1.279905598 0.596798435 0.141048843 0.23069567 1.384580112 0.05118411 0.065442155 1.53E-06 5.814227764 0.428860077 AS(ph)PHDVLETIFVR ddPTM_HeLa_A486_30min_R1 4 ASPHDVLETIFVR 13 0 O75143-4;O75143-3;O75143-2;O75143;O75143-5;H0YEM7;H0YCL5 O75143-4 ATG13 Autophagy-related protein 13 1 0 AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR ;;; 137.21 5.90E-06 172960000 157607.6 193696.5 130639.3 46669 149214.6 154500.8 151732.6 147536.6 152397.2 161902.9 TRUE FALSE FALSE 146560.1211 178347.2839 181226.3356 108647.7905 130498.7135 135440.0621 113767.4986 113945.7369 165607.112 121361.36 1.207634136 1.469555745 1.493278714 0.895242032 1.075290467 1.116006463 0.937427684 0.938896341 1.364578577 1 16.88894963 -5.256168627 24.98821824 1.043747734 1.398096165 0.545783472 0.143476931 318.7606508 1511214.554 0.03867099 0.064510954 5.54E-06 5.256168627 0.354348431 AS(ph)PIKMDLAPSK ddPTM_HeLa_A485_30min_R1 11 ASPIKMDLAPSK 12 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(0.999)PIKMDLAPS(0.001)K;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK ;;;;;;;;;; 132.59 1.13E-05 29067230000 27620470 15840130 10320400 40662740 19876380 18266600 28160990 18427040 17671180 48188470 TRUE FALSE FALSE 33764548.26 17692495.41 14138345.43 42884042.52 17897417.82 19223010.93 22144164.43 13907779.55 21217623.74 36175971.27 0.933341859 0.489067599 0.390821447 1.185428919 0.494732199 0.531375116 0.612123563 0.384447993 0.586511516 1 25.10852842 -10.22269259 5.040980153 1.000046453 0.615045514 0.182978709 0.238384276 0.000123264 1.90E-05 0.228605722 0.055438358 5.99E-11 10.22269259 -0.38500094 AS(ph)PIKMDLAPSK ddPTM_HeLa_A486_30min_R1 12 ASPIKMDLAPSK 12 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK;AS(1)PIKMDLAPSK ;;;;;;;;;;; 151.62 5.34E-08 48853030000 30705130 29456480 11199910 12243990 19118840 31976450 38810990 32423150 23186290 41182210 TRUE FALSE FALSE 28552858.95 27122241.25 15536815.1 28504627.5 16720776.81 28031520.71 29100069.8 25041106.54 25196096.29 30869916.56 0.924941241 0.878597815 0.503299549 0.923378832 0.541652802 0.908053012 0.942667588 0.811181543 0.81620228 1 24.87969825 AS(ph)PIKMDLAPSKDMGPPKENK ddPTM_HeLa_A485_30min_R1 1 ASPIKMDLAPSKDMGPPKENK 21 3 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AS(1)PIKMDLAPSKDMGPPKENK 62.677 0.01489 775770000 78203 74367 34691 69286 75981 138210 214000 282470 49710 105780 TRUE FALSE FALSE 95598.98755 83063.57374 47524.64451 73070.91874 68416.06485 145446.4619 168277.1518 213193.7896 59686.34103 79410.99274 1.203850805 1.045995912 0.598464304 0.920161255 0.861544007 1.831565843 2.119066215 2.684688634 0.751613082 1 16.27705111 -6.262671474 24.64803663 1.810284802 0.914148324 0.317591963 0.533057155 93.72770231 1875005.445 0.178577114 0.166285179 5.46E-07 6.262671474 -0.896136478 AS(ph)PIKMDLAPSKDMGPPKENK ddPTM_HeLa_A486_30min_R1 1 ASPIKMDLAPSKDMGPPKENK 21 3 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AS(1)PIKMDLAPSKDMGPPKENK 76.777 0.0039485 537020000 742990 292000 79731 325740 337580 344310 711490 675300 155170 1095200 TRUE FALSE FALSE 690910.2378 268860.8566 110604.9785 758339.182 295237.5686 301832.5329 533467.6766 521548.9317 168620.2605 820954.7914 0.841593526 0.327497762 0.134727246 0.92372831 0.359627073 0.367660358 0.649813707 0.635295557 0.205395306 1 19.64694325 -10.27024102 4.039147331 1.000571295 0.492187251 0.269766346 0.249773411 161751509.7 246378626.5 1078177.008 0.06263133 5.37E-11 10.27024102 -0.508384043 AS(ph)PIQPALDPSR ddPTM_HeLa_A485_30min_R1 1 ASPIQPALDPSR 12 0 Q99500 Q99500 S1PR3 Sphingosine 1-phosphate receptor 3 1 0 AS(1)PIQPALDPSR 94.673 0.0016675 99965000 99136 111310 79565 107010 83376 97521 107590 87595 89156 208850 TRUE FALSE FALSE 121188.4612 124326.7362 108999.4045 112855.6853 75074.79269 102627.0488 84602.51757 66112.18891 107048.7914 156787.5386 0.772947023 0.792963123 0.695204513 0.719800096 0.478831375 0.65456126 0.539599756 0.421667369 0.68276339 1 17.25845137 -5.584472969 9.94317273 0.59734596 0.749331251 0.105432743 0.150445063 0.643869998 99.32814512 0.041937982 0.054164894 2.60E-06 5.584472969 0.151985291 AS(ph)PIQPALDPSR ddPTM_HeLa_A486_30min_R1 1 ASPIQPALDPSR 12 0 Q99500 Q99500 S1PR3 Sphingosine 1-phosphate receptor 3 1 0 AS(1)PIQPALDPSR 128.76 3.33E-05 127370000 144020 143680 121330 34963 171450 139070 125560 139580 157770 192680 TRUE FALSE FALSE 133924.9417 132294.2735 168312.2253 81395.63093 149945.1423 121912.9574 94143.55996 107800.681 171445.6306 144431.6739 0.927254654 0.915964414 1.165341513 0.563558039 1.038173541 0.844087409 0.651820736 0.746378396 1.187036237 1 17.14002763 -5.224593052 24.99978398 0.848900682 0.994164509 0.105561177 0.185385993 1325.485944 899324.4475 0.049306931 0.085398977 5.96E-06 5.224593052 0.145263827 AS(ph)PLLSDK ddPTM_HeLa_A486_30min_R1 4 ASPLLSDK 8 0 C9J637;A0A590UJ51;H0Y7H7;H0Y599;Q8N1I0-2;Q8N1I0;Q8N1I0-3;A0A590UJM5 C9J637 DOCK4 Dedicator of cytokinesis protein 4 1 0 AS(1)PLLSDK;AS(1)PLLSDK;AS(1)PLLSDK;AS(1)PLLSDK ;;; 144.28 0.00035325 938230000 1922330 1899200 1056970 740940 1798030 2077100 2329700 2216030 1502690 2490500 TRUE FALSE FALSE 1787584.594 1748700.475 1466257.091 1724945.765 1572504.311 1820848.52 1746784.419 1711488.345 1632944.379 1866862.59 0.957534102 0.936705511 0.785412434 0.923981109 0.842324615 0.975352193 0.93567916 0.916772533 0.874699824 1 20.83218431 -6.265390631 24.98600337 0.934997674 0.887998465 0.171933991 0.055618854 702.2998669 4441029.083 0.01941129 0.017756918 5.43E-07 6.265390631 -0.046999209 AS(ph)PLVAIGQTLAR ddPTM_HeLa_A486_30min_R1 1 ASPLVAIGQTLAR 13 0 Q9NSI2-2;Q9NSI2 Q9NSI2-2 FAM207A Protein FAM207A 1 0 AS(1)PLVAIGQTLAR 63.09 0.022887 46837000 34579 34746 31584 31468 45258 34952 38137 39721 29965 39040 TRUE FALSE FALSE 32155.19067 31992.60042 43814.17065 73259.0943 39581.31963 30639.97761 28594.71923 30677.3954 32562.39033 29264.12989 1.098791961 1.093236004 1.497197108 2.503375107 1.352554126 1.047014817 0.977125216 1.04829344 1.112706595 1 14.83684576 -6.141089692 4.64064067 1.038517107 1.554467077 0.298792213 0.3671521 0.323953917 10.89887642 0.135831171 0.136267433 7.23E-07 6.141089692 0.515949969 AS(ph)PLYASYK ddPTM_HeLa_A485_30min_R1 4 ASPLYASYK 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AS(1)PLYASYK;AS(1)PLYASYK;AS(1)PLYASYK;AS(1)PLYASYK ;;; 218.07 5.70E-12 1807930000 3106758 2686945 2325912 3799871 3103907 2939413 3564381 2721798 2575544 4882619 TRUE FALSE FALSE 3797845.599 3001159.844 3186363.638 4007448.331 2794871.121 3093316.119 2802821.881 2054272.773 3092432.057 3665471.941 1.036113674 0.818764921 0.86929151 1.093296687 0.762486022 0.843906643 0.764655118 0.560438821 0.843665456 1 21.80556753 -5.807644844 24.99983289 0.774722623 0.938604422 0.262534428 0.126119657 162.1449743 87728.89513 0.038781215 0.043973908 1.56E-06 5.807644844 0.163881799 AS(ph)PLYASYK ddPTM_HeLa_A486_30min_R1 5 ASPLYASYK 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AS(1)PLYASYK;AS(1)PLYASYK;AS(1)PLYASYK;AS(1)PLYASYK;AS(1)PLYASYK ;;;; 247.31 2.80E-16 3180100000 3960100 4589050 2341330 1182170 3752550 4195360 4215130 4105300 3724050 5045150 TRUE FALSE FALSE 3682517.44 4225396.965 3247955.679 2752151.504 3281870.188 3677779.138 3160459.891 3170612.808 4046853.652 3781811.602 0.973744287 1.117294411 0.858835929 0.727733635 0.867803723 0.972491368 0.835699983 0.838384653 1.070083357 1 21.85064606 -4.771740565 24.997544 0.884114674 1.045519356 0.263875988 0.097940215 220.1775144 534300.9498 0.025669211 0.054384113 1.69E-05 4.771740565 0.161404682 AS(ph)PNLIGATGANSLGK ddPTM_HeLa_A485_30min_R1 2 ASPNLIGATGANSLGK 16 0 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 AS(1)PNLIGATGANSLGK;AS(1)PNLIGATGANSLGK ; 236.66 2.40E-41 393690000 384030 403170 326230 413800 432210 416910 483530 458420 238370 450170 TRUE FALSE FALSE 469456.1486 450317.2244 446916.0526 436404.8462 389177.6548 438738.7629 380219.8654 345991.7762 286208.6725 337950.9038 1.389125294 1.332493032 1.322428931 1.29132617 1.151580453 1.298232252 1.125074267 1.02379302 0.846894236 1 18.36645415 -7.032033979 1.094056621 0.914757244 1.313341957 0.83448034 0.068706071 0.203163143 0.449776511 0.056284727 0.025565759 9.29E-08 7.032033979 0.398584713 AS(ph)PNLIGATGANSLGK ddPTM_HeLa_A486_30min_R1 4 ASPNLIGATGANSLGK 16 0 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 AS(1)PNLIGATGANSLGK;AS(1)PNLIGATGANSLGK;AS(1)PNLIGATGANSLGK;AS(1)PNLIGATGANSLGK ;;; 306.27 2.20E-68 692310000 898030 987130 567210 374489 929580 883800 1038530 955500 694790 1060170 TRUE FALSE FALSE 835082.7344 908906.2237 786848.9024 871829.3176 812983.4084 774765.7418 778678.8095 737953.5084 755014.9566 794696.5315 1.050819654 1.143714849 0.990124999 1.097059422 1.023011145 0.974920251 0.979844228 0.928597873 0.950067009 1 19.60004452 -6.146809676 1.73332735 0.958280563 1.07182502 0.590153762 0.040490416 0.240928396 1.438459628 0.015826838 0.015691694 7.13E-07 6.146809676 0.113544457 AS(ph)PNPVAMETR ddPTM_HeLa_A486_30min_R1 1 ASPNPVAMETR 11 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 AS(1)PNPVAMETR 78.902 0.0078761 199620000 120660 111380 91264 46988 149020 151160 131710 135230 115330 97846 TRUE FALSE FALSE 112202.3571 102553.8432 126603.8649 109390.4386 130328.522 132511.4161 98754.76491 104441.0811 125326.8973 73344.72473 1.529794508 1.398244298 1.726148205 1.491456121 1.776931095 1.806693209 1.346446732 1.423975363 1.708737714 1 16.16240558 -10.52550791 6.809569402 0.999661481 1.576328728 0.546158965 0.158248936 0.000840557 5.86E-05 0.158360811 0.038386678 2.98E-11 10.52550791 0.576667248 AS(ph)PNVEAPQPHR ddPTM_HeLa_A486_30min_R1 1 ASPNVEAPQPHR 12 0 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 AS(1)PNVEAPQPHR 74.338 0.0070536 123860000 42419 61157 50928 16557 54582 54209 53461 47633 50279 54146 TRUE FALSE FALSE 39445.64715 56310.69659 70648.6855 38545.53274 47735.8166 47521.24474 40084.49235 36788.00572 54637.2242 40587.48917 0.971867143 1.387390493 1.740651786 0.949690004 1.17612145 1.170834799 0.987607097 0.906387817 1.346159256 1 15.30874747 -5.303688723 24.99994822 1.077139677 1.368712815 0.283352623 0.211302656 601.1610283 355720.1524 0.059719194 0.08857871 4.97E-06 5.303688723 0.291573138 AS(ph)PPAESMSVYR ddPTM_HeLa_A485_30min_R1 3 ASPPAESMSVYR 12 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 AS(1)PPAESMSVYR;AS(1)PPAESMSVYR;AS(1)PPAESMSVYR ;; 205.31 3.30E-17 1833690000 135052 146611 155010 179026 166714 158561 185422 191632 125859 275233 TRUE FALSE FALSE 165093.8515 163755.8811 212354.6495 188805.7371 150115.3688 166863.0088 145805.0749 144633.9515 151117.7469 206622.4784 0.799012057 0.792536622 1.027742244 0.913771524 0.726520028 0.807574326 0.705659307 0.699991369 0.731371282 1 17.65663769 -5.759187129 24.99960837 0.761328692 0.887104742 0.188801541 0.102599503 85.03094425 943818.3992 0.030717969 0.037756611 1.74E-06 5.759187129 0.12577605 AS(ph)PPAESMSVYR ddPTM_HeLa_A486_30min_R1 4 ASPPAESMSVYR 12 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 AS(1)PPAESMSVYR;AS(1)PPAESMSVYR;AS(1)PPAESMSVYR;AS(1)PPAESMSVYR ;;; 204.32 3.62E-17 2746050000 197995 233664 148536 74389 213380 231112 244441 247474 161782 254062 TRUE FALSE FALSE 184116.5729 215147.6137 206053.1171 173181.3514 186615.8907 202599.7512 183279.2764 191129.5725 175805.394 190443.2215 0.966779345 1.129720512 1.081966139 0.909359493 0.979903035 1.063832829 0.962382777 1.003603966 0.923138102 1 17.53900141 -5.234271776 24.83865294 0.980682627 1.066511865 0.311617772 0.055432037 801.1465285 732466.8146 0.014833953 0.025684451 5.83E-06 5.234271776 0.085829239 AS(ph)PPGDLQNPK ddPTM_HeLa_A485_30min_R1 4 ASPPGDLQNPK 11 0 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK ;;; 142.08 1.13E-06 3554220000 1680550 1047980 942630 2681810 1724480 1337060 2147220 2017190 1444160 3869900 TRUE FALSE FALSE 2054382.55 1170532.145 1291348.063 2828310.49 1552784.716 1407066.394 1688448.906 1522470.99 1733989.665 2905205.15 0.707138547 0.402908602 0.444494621 0.973532106 0.534483672 0.484326002 0.581180612 0.524049391 0.596856186 1 21.47020861 -8.06626654 20.0795736 1.000000001 0.578067878 0.399475555 0.153358596 2917.073566 883910.1838 0.150089582 0.038752964 8.58E-09 8.06626654 -0.421932123 AS(ph)PPGDLQNPK ddPTM_HeLa_A486_30min_R1 4 ASPPGDLQNPK 11 0 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK ;;; 139.7 7.64E-06 4399750000 1535900 1688010 831680 812658 1411000 1983590 2362800 2194990 1392200 2404510 TRUE FALSE FALSE 1428241.341 1554245.94 1153728.769 1891908.893 1234019.223 1738874.833 1771602.449 1695238.693 1512877.017 1802405.045 0.792408646 0.862317793 0.64010516 1.04965801 0.684651447 0.964752533 0.982910281 0.940542581 0.839365725 1 20.78149183 -6.302388848 24.91652964 0.944135423 0.813305709 0.285609552 0.110132036 678.3909559 412778.6176 0.036890098 0.032534363 4.98E-07 6.302388848 -0.130829714 AS(ph)PPGDLQNPKR ddPTM_HeLa_A485_30min_R1 1 ASPPGDLQNPKR 12 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 AS(1)PPGDLQNPKR 80.534 0.003459 354520000 344480 481010 307740 267760 442830 556610 731280 801030 342880 381150 TRUE FALSE FALSE 421108.3876 537259.9353 421585.8321 282387.0508 398740.2903 585753.2389 575036.054 604576.1365 411692.8709 286136.3195 1.471705473 1.877636282 1.473374064 0.986896914 1.393532603 2.047112509 2.009657687 2.112895481 1.438799771 1 18.12634311 -6.240959909 24.23254109 1.809246856 1.441519029 0.103261747 0.371775045 973.7189552 1152162.625 0.123715631 0.123558159 5.74E-07 6.240959909 -0.367727827 AS(ph)PPGDLQNPKR ddPTM_HeLa_A486_30min_R1 2 ASPPGDLQNPKR 12 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 AS(1)PPGDLQNPKR;AS(1)PPGDLQNPKR ; 60.968 0.016463 980530000 979260 857780 531640 351530 1004310 743730 1078150 1091210 560620 1307850 TRUE FALSE FALSE 910618.9309 789806.3888 737505.2458 818379.6053 878340.075 651976.1543 808385.4665 842765.3039 609214.993 980355.8473 0.928865711 0.805632354 0.752283212 0.834778114 0.895940058 0.665040308 0.824583715 0.859652448 0.621422308 1 19.90294598 AS(ph)PPPQGPLPGPPGALHR ddPTM_HeLa_A485_30min_R1 6 ASPPPQGPLPGPPGALHR 18 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR ;;;;; 160.57 4.32E-12 14201060000 1857900 2353970 2202310 2198800 3006480 2217560 2660960 2798440 2130710 2587620 TRUE FALSE FALSE 2271183.445 2629246.315 3017036.115 2318914.876 2707144.295 2333668.013 2092424.158 2112118.202 2558323.953 1942573.956 1.169161894 1.353485826 1.553112614 1.193733124 1.393586219 1.201327757 1.077140024 1.087278143 1.316976348 1 20.88953809 -6.450989729 4.337707672 1.128163678 1.337457828 0.392708587 0.124744783 0.240434361 8.602845093 0.045756072 0.039092017 3.54E-07 6.450989729 0.20929415 AS(ph)PPPQGPLPGPPGALHR ddPTM_HeLa_A486_30min_R1 6 ASPPPQGPLPGPPGALHR 18 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR ;;;;; 179.42 8.15E-18 14298230000 1385574 1601940 1311823 553966 1782780 1468260 1652990 1689300 1357958 1568390 TRUE FALSE FALSE 1288452.418 1474996.44 1819795.997 1289660.844 1559167.109 1287121.009 1239394.418 1304683.267 1475666.893 1175654.935 1.095944379 1.254616806 1.547899764 1.096972253 1.326211511 1.094811896 1.054216149 1.109750172 1.255187086 1 20.16503325 -6.271305898 24.35690886 1.106616377 1.27024572 0.268323365 0.13311954 694.1777577 1713670.877 0.046760119 0.041748855 5.35E-07 6.271305898 0.163629343 AS(ph)PRPWTPEDPWSLYGPSPGGR ddPTM_HeLa_A486_30min_R1 1 ASPRPWTPEDPWSLYGPSPGGR 22 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 AS(0.996)PRPWT(0.004)PEDPWSLYGPSPGGR 66.282 0.0048109 30307000 20735 18236 13651 5151.6 15681 11648 12909 11638 10781 14430 TRUE FALSE FALSE 19281.58358 16790.91295 18937.03279 11993.18515 13714.14276 10210.98819 9679.031663 8988.281456 11715.50576 10816.63408 1.782586287 1.552323285 1.750732497 1.108772384 1.267875262 0.944007916 0.894828428 0.830968432 1.083100868 1 13.40096401 -5.466195909 1.105800444 0.937783734 1.744363791 0.850515243 0.129602953 0.182151114 0.44815838 0.048860698 0.104205136 3.42E-06 5.466195909 0.806580057 AS(ph)PS(ph)PPAHAEHGGVLAR ddPTM_HeLa_A485_30min_R1 2 ASPSPPAHAEHGGVLAR 17 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 2 0 AS(1)PS(1)PPAHAEHGGVLAR;AS(1)PS(1)PPAHAEHGGVLAR ; 89.028 0.00028438 0 155233 194196 204040 200011 248550 189998 241950 242930 182694 277370 TRUE FALSE FALSE 189764.0453 216905.5329 279522.8868 210937.0945 223803.4893 199946.0015 190255.406 183351.0366 219359.01 208226.7636 0.911333596 1.041679413 1.342396539 1.013016246 1.074806549 0.960231999 0.913693334 0.8805354 1.053462131 1 17.66779599 -6.212936816 2.689569896 0.948949991 1.090613228 0.203950664 0.111117979 0.425381306 6.083571512 0.04248667 0.04068677 6.12E-07 6.212936816 0.141663238 AS(ph)PS(ph)PPPKR ddPTM_HeLa_A485_30min_R1 5 ASPSPPPKR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR ;;;; 71.176 0.0062788 3593190000 2362260 2158850 1838580 3200180 3054090 2565700 3433370 3402610 2261540 4143390 TRUE FALSE FALSE 2887736.587 2411308.728 2518747.252 3374997.73 2750014.076 2700036.085 2699802.451 2568114.562 2715410.334 3110519.126 0.928377698 0.775211027 0.809751411 1.085027159 0.884101323 0.868033912 0.867958801 0.825622495 0.872976575 1 21.56872395 AS(ph)PS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 6 ASPSPPPKR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR;AS(1)PS(1)PPPKR ;;;;; 67.022 0.0077492 5208780000 2737970 3192480 2209410 1505010 3471290 3647410 4088440 3893210 2779230 3979560 TRUE FALSE FALSE 2546052.442 2939496.258 3064952.722 3503739.339 3035888.44 3197429.638 3065469.069 3006811.071 3020135.894 2983052.273 0.853505808 0.985398843 1.027455251 1.174548422 1.017712115 1.071865105 1.027628344 1.007964593 1.012431435 1 21.50835783 -4.327683263 2.181328102 1.046858704 0.819032161 0.584616947 0.048302296 0.389954451 2.372829093 0.013283973 0.16346614 4.70E-05 4.327683263 -0.227826543 AS(ph)PSKPASAPASR ddPTM_HeLa_A485_30min_R1 8 ASPSKPASAPASR 13 1 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AS(0.826)PS(0.172)KPAS(0.001)APASR;AS(0.877)PS(0.122)KPASAPASR;AS(0.992)PS(0.008)KPASAPASR;AS(0.942)PS(0.058)KPASAPASR;AS(0.556)PS(0.442)KPAS(0.001)APASR;AS(0.635)PS(0.365)KPASAPASR;AS(0.974)PS(0.025)KPASAPASR;AS(0.771)PS(0.221)KPAS(0.008)APASR ;;;;;;; 184.22 4.76E-16 22868260000 10535130 10172380 7122160 12242560 11798740 10483540 13630180 14985930 9071130 15019150 TRUE FALSE FALSE 12878633.32 11361951.35 9756943.362 12911340.05 10624016.02 11032441.94 10717980.69 11310607.17 10891622.59 11275152.31 1.14221369 1.007698259 0.86534914 1.145114469 0.942250333 0.978473872 0.950584116 1.003144513 0.965984519 1 23.42664359 AS(ph)PSKPASAPASR ddPTM_HeLa_A486_30min_R1 8 ASPSKPASAPASR 13 1 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 AS(0.865)PS(0.134)KPAS(0.001)APASR;AS(0.985)PS(0.015)KPASAPASR;AS(0.998)PS(0.002)KPASAPASR;AS(0.972)PS(0.027)KPASAPASR;AS(0.943)PS(0.057)KPASAPASR;AS(0.989)PS(0.011)KPASAPASR;AS(0.991)PS(0.009)KPASAPASR;AS(0.824)PS(0.175)KPAS(0.001)APASR ;;;;;;; 197.17 3.12E-20 6714090000 3991120 3760120 2424110 1622972 3539090 3668460 4323410 4188670 2917870 4292030 TRUE FALSE FALSE 3711363.098 3462154.397 3362790.312 3778360.836 3095184.331 3215882.703 3241647.09 3235001.279 3170793.321 3217277.752 1.153572487 1.076112995 1.045228473 1.174396844 0.962050706 0.999566389 1.007574521 1.005508858 0.985551626 1 21.61740906 -5.773505223 24.99999988 0.994670295 1.104948141 0.720750456 0.036150984 125.1355451 259275.4682 0.011084023 0.012658951 1.68E-06 5.773505223 0.110277845 AS(ph)PSPQPSSQPLQIHR ddPTM_HeLa_A485_30min_R1 1 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 AS(0.888)PS(0.112)PQPSSQPLQIHR 184.78 6.80E-18 3031500000 590550 725320 774430 533190 869580 745510 846610 929100 668250 797470 TRUE FALSE FALSE 721915.8101 810139.8646 1060923.884 562316.8196 783001.5619 784543.7508 665724.8573 701236.7682 802361.6454 598675.4053 1.205855132 1.353220555 1.772118704 0.939268282 1.307889977 1.310465978 1.111996336 1.171313807 1.340228174 1 19.19141448 -13.41838701 0.059910773 1.61E-05 1.741911575 0.169760923 0.200589892 630.6629432 3.055042109 97.5644569 19.07707219 3.82E-14 13.41838701 1.741895512 AS(ph)PSPQPSSQPLQIHR ddPTM_HeLa_A486_30min_R1 1 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 AS(0.999)PS(0.001)PQPSSQPLQIHR 221.24 6.32E-34 804830000 139860 157750 119490 41336 165100 127950 153970 127930 129530 166060 TRUE FALSE FALSE 130056.5362 145249.3155 165759.7281 96232.29701 144391.6185 112164.8299 115445.0775 98803.13169 140757.7647 124477.4951 1.044819677 1.166872095 1.331644149 0.773089922 1.159981717 0.90108521 0.927437344 0.79374293 1.130788859 1 16.92552541 -5.257360111 24.99978546 0.951692715 1.179687978 0.374088349 0.133878412 365.8134956 2241878.311 0.035486042 0.058715445 5.53E-06 5.257360111 0.227995262 AS(ph)PSVTCK ddPTM_HeLa_A485_30min_R1 1 ASPSVTCK 8 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AS(0.993)PS(0.007)VTCK 73.985 0.013765 461930000 147320 142530 129690 149580 174400 142420 167460 168570 131460 194020 TRUE FALSE FALSE 180090.8258 159197.6437 177667.7279 157751.1766 157036.1236 149876.891 131680.803 127227.9432 157842.8162 145654.3847 1.236425708 1.092982158 1.219789766 1.083051341 1.078142096 1.028989902 0.904063433 0.873492023 1.083680498 1 17.15218961 -5.969681009 1.228524371 0.957840462 1.173819432 0.625563493 0.067817681 0.286546422 0.906592569 0.029531309 0.034722808 1.07E-06 5.969681009 0.21597897 AS(ph)PSVTCK ddPTM_HeLa_A486_30min_R1 2 ASPSVTCK 8 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AS(0.957)PS(0.043)VTCK;AS(0.993)PS(0.006)VTCK ; 134.23 0.00050049 1372680000 1649560 1809960 1128910 608830 1794800 1733700 2011140 2049800 1344010 1859820 TRUE FALSE FALSE 1533934.362 1666532.178 1566054.185 1417387.009 1569679.448 1519813.721 1507931.5 1583105.287 1460509.869 1394108.967 1.100297322 1.195410271 1.123337001 1.016697434 1.125937416 1.090168529 1.081645364 1.135567825 1.047629636 1 20.4109119 -13.99999999 0.0895506 0.669624583 1.18836383 0.380778236 0.043818131 242.9665971 1.510326574 15.40357399 1.091820739 1.00E-14 13.99999999 0.518739248 AS(ph)PSYSALDK ddPTM_HeLa_A486_30min_R1 2 ASPSYSALDK 10 0 Q9NYD6;D6RAG4 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 AS(0.894)PS(0.106)YSALDK;AS(0.799)PS(0.195)YS(0.007)ALDK ; 124.12 0.00012195 459370000 496130 568570 324540 192897 479780 602230 602230 577330 457060 621000 TRUE FALSE FALSE 461353.849 523514.4425 450210.5795 449073.9645 419601.5186 527932.9856 451545.6843 445884.562 496678.3288 465497.558 0.991098323 1.124634133 0.967159917 0.964718196 0.901404339 1.13412622 0.970028041 0.957866598 1.066983747 1 18.82841407 -4.787125145 24.99778687 0.993393018 1.057866384 0.119493146 0.067794832 397.3190046 386676.4056 0.017480723 0.036408323 1.63E-05 4.787125145 0.064473366 AS(ph)PVAALK ddPTM_HeLa_A485_30min_R1 1 ASPVAALK 8 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 AS(1)PVAALK 137.95 0.00045356 315230000 598590 596470 403920 763130 591200 630790 765890 680720 529700 965050 TRUE FALSE FALSE 731744.2804 666221.9779 553346.8165 804817.8596 532338.0522 663817.189 602251.3448 513772.3527 636005.9313 724480.7954 1.01002578 0.919585422 0.763783968 1.110889156 0.734785595 0.916266095 0.831286831 0.709159381 0.877878248 1 19.46658792 -5.795494535 24.99999312 0.833242121 0.935445193 0.165000612 0.113070645 337.0096269 247398.0084 0.033894423 0.038434603 1.60E-06 5.795494535 0.102203072 AS(ph)PVAALK ddPTM_HeLa_A486_30min_R1 2 ASPVAALK 8 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 AS(1)PVAALK;AS(1)PVAALK ; 132.88 0.00051753 568700000 1493130 1545160 693700 704010 1155940 1414270 1520020 1451290 1143880 1940910 TRUE FALSE FALSE 1388469.298 1422715.894 962319.2179 1638970.859 1010951.226 1239791.747 1139694.919 1120862.948 1243032.439 1454893.503 0.954344284 0.977883186 0.661436192 1.126522907 0.694862699 0.85215292 0.783352814 0.770408931 0.854380363 1 20.47248212 AS(ph)PVAVGSSGAGADPSFQPVLSAR ddPTM_HeLa_A485_30min_R1 1 ASPVAVGSSGAGADPSFQPVLSAR 24 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 AS(1)PVAVGSSGAGADPSFQPVLSAR 138.03 1.20E-06 51287000 28952 36260 34897 36766 44207 29986 44396 39750 41038 43946 TRUE FALSE FALSE 35392.27252 40500.29158 47806.85249 38774.43348 39805.59586 31556.02059 34910.43192 30001.25017 49273.95018 32991.07097 1.072783377 1.227613727 1.449084588 1.175300842 1.206556644 0.956501855 1.058178195 0.909374849 1.493554126 1 15.00978799 -6.07735741 7.117562069 1.076048649 1.239940346 0.14544797 0.172779918 0.49001006 39.04570579 0.056297718 0.056532907 8.37E-07 6.07735741 0.163891696 AS(ph)PVAVGSSGAGADPSFQPVLSAR ddPTM_HeLa_A486_30min_R1 1 ASPVAVGSSGAGADPSFQPVLSAR 24 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 AS(1)PVAVGSSGAGADPSFQPVLSAR 78.088 5.90E-05 0 30895 31281 25321 8620.6 34178 24327 26914 26049 21763 26720 TRUE FALSE FALSE 28729.42004 28802.17964 35125.96932 20069.19246 29891.07654 21325.78208 20179.83253 20118.21135 23649.43436 20029.13808 1.434381246 1.438013933 1.75374343 1.001999805 1.492379573 1.064737883 1.007523761 1.004447184 1.180751476 1 14.28981272 -5.868754303 0.971288683 1.038258928 1.511818337 0.513211575 0.1795922 0.442016976 0.903048048 0.086212179 0.11961314 1.35E-06 5.868754303 0.473559409 AS(ph)PVGDGNFR ddPTM_HeLa_A485_30min_R1 1 ASPVGDGNFR 10 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AS(1)PVGDGNFR 73.655 0.011683 364520000 396860 409120 413240 307490 632230 469020 502300 541910 427340 396760 TRUE FALSE FALSE 485140.1378 456963.0251 566114.6724 324287.4001 569282.9613 493577.162 394979.5016 409005.7228 513103.2182 297855.0338 1.628779382 1.534179293 1.900638257 1.088742386 1.911275274 1.657105323 1.326079659 1.373170423 1.722660892 1 18.18425082 -11.82521998 0.264579693 8.80E-16 1.622595366 0.330154604 0.243491742 64.32984599 1.7648415 36.77207693 0.318825257 1.50E-12 11.82521998 1.622595366 AS(ph)PVGDGNFR ddPTM_HeLa_A486_30min_R1 1 ASPVGDGNFR 10 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AS(1)PVGDGNFR 93.839 0.0026587 388660000 589210 672700 490720 140280 603180 579830 613560 578850 497820 521450 TRUE FALSE FALSE 547909.4217 619392.8021 680739.9259 326578.9294 527523.54 508296.4699 460040.7984 447058.4912 540971.4384 390875.5259 1.401749113 1.584629277 1.741577256 0.83550621 1.349594705 1.300404953 1.176949612 1.143736206 1.383999259 1 18.57634973 -5.242926163 24.99863189 1.189219073 1.576849624 0.536290478 0.172340907 655.589632 885249.8831 0.045551248 0.07871593 5.72E-06 5.242926163 0.38763055 AS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_A485_30min_R1 4 ASPVPAPSSGLHAAVR 16 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR ;;; 207.82 1.73E-24 2083670000 1454490 1907840 1846903 805478 1904480 1449580 1621230 1398580 1670340 1874410 TRUE FALSE FALSE 1778036.283 2130945.292 2530149.276 849479.2236 1714863.284 1525477.767 1274840.966 1055576.062 2005561.917 1407154.083 1.263569004 1.514365284 1.798061283 0.603686003 1.218674845 1.084087227 0.905971124 0.750149593 1.425261058 1 20.42434888 -5.253430089 24.94945278 0.996765511 1.52423519 0.490037368 0.246391453 492.6260412 1534558.196 0.065499407 0.11090629 5.58E-06 5.253430089 0.527469679 AS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_A486_30min_R1 4 ASPVPAPSSGLHAAVR 16 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR;AS(1)PVPAPSSGLHAAVR ;;; 182.82 7.89E-18 3406610000 2216770 2413723 2013041 88740 2670176 1708413 1784086 1611527 2336460 1212216 TRUE FALSE FALSE 2061385.87 2222450.799 2792544.386 206591.2047 2335257.628 1497646.374 1337688.813 1244617.481 2538986.234 908669.2234 2.268576746 2.445830388 3.073224353 0.227355785 2.569975485 1.648175525 1.472140553 1.369714578 2.79418095 1 19.79339569 AS(ph)PVSFQELNR ddPTM_HeLa_A486_30min_R1 1 ASPVSFQELNR 11 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 AS(0.996)PVS(0.004)FQELNR 105.66 0.00072867 170450000 94901 98602 95285 26499 124410 86113 109400 97130 92968 76077 TRUE FALSE FALSE 88248.92997 90788.41842 132181.9038 61691.01119 108805.3377 75489.25359 82026.96288 75015.61933 101026.5411 57026.82402 1.547498594 1.592030066 2.317889977 1.081789355 1.90796769 1.323749917 1.438392621 1.315444453 1.771561766 1 15.79935307 -6.055983349 0.987092869 1.383720061 1.732530142 0.151861641 0.345187401 1.096384271 2.300731784 0.175735144 0.197477456 8.79E-07 6.055983349 0.348810081 AS(ph)QEANLLTLAQK ddPTM_HeLa_A485_30min_R1 2 ASQEANLLTLAQK 13 0 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 AS(1)QEANLLTLAQK;AS(1)QEANLLTLAQK ; 105.53 0.0004243 110493000 208187 188535 180804 316440 309750 205354 301730 268050 250050 415950 TRUE FALSE FALSE 254497.4799 210582.5282 247690.9235 333726.3159 278910.2024 216106.0179 237262.9206 202310.3172 300232.7414 312261.32 0.815014424 0.674379165 0.793216795 1.068740489 0.893194848 0.692067842 0.759821679 0.647887856 0.961479127 1 18.25239435 -7.931235247 9.2105569 0.999887966 0.797274976 0.299643065 0.115380682 0.369396451 44.15995489 0.121120191 0.03130042 1.17E-08 7.931235247 -0.20261299 AS(ph)QEANLLTLAQK ddPTM_HeLa_A486_30min_R1 2 ASQEANLLTLAQK 13 0 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 AS(1)QEANLLTLAQK;AS(1)QEANLLTLAQK ; 246.03 3.24E-35 160005000 94530 132810 91798 57824 141420 151070 159770 167890 109430 123400 TRUE FALSE FALSE 87903.93515 122285.6519 127344.644 134617.1943 123681.7849 132432.5194 119793.8561 129665.112 118915.4805 92499.8368 0.950314489 1.32200938 1.376701283 1.455323587 1.337102736 1.431705438 1.295071 1.401787468 1.28557503 1 16.4971632 -10.2664951 4.138784916 0.999697206 1.329013886 0.330984285 0.1344011 92043277.47 136.0064971 265751.5192 0.03240153 5.41E-11 10.2664951 0.32931668 AS(ph)QSPQKQHPLLDGVDGECPFPSR ddPTM_HeLa_A485_30min_R1 1 ASQSPQKQHPLLDGVDGECPFPSR 24 1 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4;H7C1G3;H7C0J8 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 AS(0.5)QS(0.5)PQKQHPLLDGVDGECPFPSR 119.18 5.08E-05 116010000 83153 84418 90289 114230 130170 93493 128190 128620 91380 160500 TRUE FALSE FALSE 101650.098 94289.95076 123690.6583 120470.0957 117209.8177 98388.14891 100801.1593 97075.74333 109719.1278 120490.3038 0.843637162 0.782552187 1.026561096 0.999832284 0.972773859 0.816564867 0.836591461 0.805672658 0.910605454 1 16.87855753 -6.262975153 24.99692302 0.859410466 0.926945296 0.070094398 0.085297271 325.7643514 5302248.345 0.031094221 0.02882659 5.46E-07 6.262975153 0.06753483 AS(ph)QSPQKQHPLLDGVDGECPFPSR ddPTM_HeLa_A486_30min_R1 3 ASQSPQKQHPLLDGVDGECPFPSR 24 1 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4;H7C1G3;H7C0J8 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 AS(0.575)QS(0.425)PQKQHPLLDGVDGECPFPSR;AS(0.5)QS(0.5)PQKQHPLLDGVDGECPFPSR;AS(0.5)QS(0.5)PQKQHPLLDGVDGECPFPSR ;; 122.68 6.82E-06 359249000 275618 307952 215881 128097 327847 294250 361227 372136 228584 372325 TRUE FALSE FALSE 256298.6015 283548.762 299475.9047 298216.2897 286725.3722 257948.4267 270844.1839 287408.7565 248397.8452 279092.3966 0.918328857 1.015967348 1.073034982 1.068521727 1.027349278 0.924240251 0.970446301 1.029797873 0.890020109 1 18.0903833 -6.232286696 23.21013142 0.965234863 1.025951728 0.222992114 0.053343543 455.5307417 362673.5373 0.01800937 0.018004878 5.86E-07 6.232286696 0.060716865 AS(ph)QSPQKQHPLLDGVDGECPFPSRR ddPTM_HeLa_A485_30min_R1 1 ASQSPQKQHPLLDGVDGECPFPSRR 25 2 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4;H7C1G3;H7C0J8 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 AS(0.536)QS(0.464)PQKQHPLLDGVDGECPFPSRR 141.75 2.31E-09 312780000 92151 122300 82794 84651 132380 120780 178490 218980 84529 105100 TRUE FALSE FALSE 112649.672 136601.9211 113422.9459 89275.26978 119199.7824 127103.854 140354.1534 165274.8117 101493.195 78900.50422 1.427743373 1.731318735 1.437543994 1.131491752 1.510760718 1.610938425 1.77887524 2.094724404 1.28634406 1 16.2677469 -6.192338922 4.180841533 1.637387977 1.441251956 0 0.306816038 0.636618415 21.82686768 0.104072932 0.102672072 6.42E-07 6.192338922 -0.196136021 AS(ph)QSPQKQHPLLDGVDGECPFPSRR ddPTM_HeLa_A486_30min_R1 1 ASQSPQKQHPLLDGVDGECPFPSRR 25 2 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4;H7C1G3;H7C0J8 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 AS(0.527)QS(0.473)PQKQHPLLDGVDGECPFPSRR 93.295 0.0010592 139710000 56245 62045 49862 21750 88980 56215 83737 84922 40030 76786 TRUE FALSE FALSE 52302.51595 57128.32824 69169.90175 50635.09918 77819.29869 49279.76485 62785.11692 65587.11443 43499.83263 57558.28581 0.908687867 0.992530049 1.201736653 0.879718679 1.352008622 0.856171517 1.09080936 1.139490406 0.755752747 1 15.81273601 -7.754015809 24.99695166 0.877876356 1.054547809 0.167042338 0.156059534 252.2590818 849438.2476 0.102977679 0.037197976 1.76E-08 7.754015809 0.176671453 AS(ph)SHSS(ph)QTQGGGSVTKK ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.5)S(0.5)HS(0.089)S(0.907)QT(0.004)QGGGSVTKK 83.905 0.0026988 1264600000 486860 430630 264480 77364 454440 404050 555030 540750 324160 418740 TRUE FALSE FALSE 452733.6281 396505.3105 366893.739 180107.3018 397439.8977 354202.4191 416155.6235 417633.0295 352258.4498 313884.7785 1.44235611 1.263219301 1.168880316 0.573800688 1.266196786 1.128447263 1.325822888 1.33052973 1.122254005 1 18.25987554 AS(ph)SHSSQTQGGGS(ph)VTKK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.966)S(0.033)HS(0.003)S(0.003)QT(0.011)QGGGS(0.959)VT(0.024)KK 73.546 0.0028351 160010000 81148 92385 73412 57321 168140 86328 136600 122330 94414 125440 TRUE FALSE FALSE 99199.09264 103188.6221 100570.1537 60452.30109 151399.3912 90848.00059 107414.2941 92328.37569 113362.0238 94170.11655 1.053403099 1.095768232 1.067962507 0.641947821 1.607722245 0.964722185 1.140640981 0.980442407 1.203800398 1 16.52298169 AS(ph)SHSSQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 4 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.2)S(0.2)HS(0.2)S(0.2)QT(0.2)QGGGS(0.002)VTK;AS(0.583)S(0.395)HS(0.011)S(0.011)QTQGGGSVTK;AS(0.586)S(0.409)HS(0.002)S(0.003)QTQGGGSVTK;AS(0.48)S(0.48)HS(0.02)S(0.02)QTQGGGSVTK ;;; 220.28 8.19E-26 1506910000 1957554 2983496 2627425 1349017 3739729 2516860 3191521 3613007 3105300 2598473 TRUE FALSE FALSE 2393005.134 3332389.904 3599418.844 1422710.383 3367388.45 2648638.898 2509626.466 2726911.368 3728505.227 1950721.502 1.226728229 1.708285832 1.845173101 0.729325217 1.726227165 1.35777398 1.28651192 1.397898862 1.911346762 1 20.89557639 AS(ph)SHSSQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.568)S(0.381)HS(0.016)S(0.035)QTQGGGSVTK;AS(0.2)S(0.2)HS(0.2)S(0.2)QT(0.2)QGGGSVTK ; 262.91 6.16E-51 18836803000 519283 544718 578601 13954.3 683251 348391 389222.2 386302 539818 108677.7 TRUE FALSE FALSE 482883.9433 501552.5619 802650.8027 32486.31561 597551.2885 305410.0606 291834.6888 298349.4675 586609.8589 81464.09655 5.927567649 6.156731408 9.852816599 0.398780776 7.335149027 3.749014272 3.582371881 3.662343046 7.200839189 1 16.31387674 -5.249435063 24.99996429 4.088098752 7.196807479 0.315766499 2.316873773 987.4355188 2056411.066 0.599591153 1.028313975 5.63E-06 5.249435063 3.108708727 AS(ph)SHSSQTQGGGSVTKK ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.488)S(0.488)HS(0.025)SQTQGGGSVTKK 162.85 6.25E-12 93013000 204810 111480 158350 13756 181760 142280 136180 121870 190930 59291 TRUE FALSE FALSE 190453.8766 102645.9188 219667.3608 32024.66319 158961.966 124726.9402 102106.3236 94122.8614 207479.9661 44444.14768 4.285240838 2.309548594 4.942548619 0.720559733 3.576668116 2.806374893 2.297407622 2.117778522 4.668330409 1 15.43970584 -1.000003339 0.608647879 2.62645566 97.85245844 0.112655312 1.310704294 439.9594287 3.309652208 0.549924343 55850.65642 0.099999231 1.000003339 95.22600278 AS(ph)SKTSPHWK ddPTM_HeLa_A485_30min_R1 1 ASSKTSPHWK 10 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 AS(0.269)S(0.269)KT(0.192)S(0.269)PHWK 61.375 0.016265 465810000 576570 796460 502360 379140 1029200 954210 1141500 1503900 679190 741240 TRUE FALSE FALSE 704826.0074 889599.0687 688203.8689 399851.4582 926729.2343 1004170.96 897609.1998 1135066.167 815497.2031 556462.5095 1.266619036 1.59866847 1.236747952 0.718559564 1.665393838 1.80456175 1.613063206 2.03978911 1.465502508 1 19.08592497 AS(ph)SKTSPHWK ddPTM_HeLa_A486_30min_R1 1 ASSKTSPHWK 10 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 AS(0.274)S(0.274)KT(0.274)S(0.178)PHWK 83.314 0.0032945 278670000 749690 620360 421640 81525 907050 617200 826550 866630 553870 653360 TRUE FALSE FALSE 697140.6024 571200.4143 584910.2999 189794.32 793279.3311 541056.1392 619738.4476 669317.2674 601879.8976 489754.4033 1.423449381 1.166299701 1.19429309 0.387529584 1.619749257 1.104749923 1.265406586 1.36663859 1.228942289 1 18.90169894 AS(ph)SPAQCVTPVQTVV ddPTM_HeLa_A486_30min_R1 2 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 1 0 AS(0.5)S(0.5)PAQCVTPVQTVV;AS(0.5)S(0.5)PAQCVTPVQTVV ; 83.314 0.0028347 251450000 570990 693660 630540 227790 767570 614920 688230 725400 581210 600230 TRUE FALSE FALSE 530966.5496 638691.8553 874701.9744 530306.6319 671294.2133 539057.4224 516027.5746 560242.2554 631589.7508 449928.5012 1.18011317 1.41954078 1.944091055 1.178646453 1.492001977 1.198095744 1.146910172 1.245180632 1.403755817 1 18.77933623 -6.108389405 1.736271923 1.209071426 1.474692514 0.215879753 0.221970427 0.589138863 3.543184106 0.08949876 0.091255064 7.79E-07 6.108389405 0.265621089 AS(ph)SPCHS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ASSPCHSPR 9 0 Q86Y91;A0A494BYR6;Q86Y91-6 Q86Y91 KIF18B Kinesin-like protein KIF18B 2 0 AS(0.73)S(0.27)PCHS(1)PR 90.434 0.0018357 0 171160 233580 109360 221060 126730 198850 165050 263550 222070 261030 TRUE FALSE FALSE 209233.9515 260895.1491 149816.8148 233135.948 114112.3162 209261.4785 129785.7192 198913.9493 266637.4121 195960.0249 1.067737931 1.331369238 0.764527433 1.18971177 0.582324463 1.067878403 0.662307117 1.015074117 1.360672475 1 17.58019985 -4.75480643 24.99720507 0.944456541 1.199553558 0.150227835 0.231206409 270.2223737 1018343.928 0.057196591 0.14412311 1.76E-05 4.75480643 0.255097017 AS(ph)SPCHSPR ddPTM_HeLa_A485_30min_R1 1 ASSPCHSPR 9 0 Q86Y91;A0A494BYR6;Q86Y91-6 Q86Y91 KIF18B Kinesin-like protein KIF18B 1 0 AS(0.5)S(0.5)PCHSPR 81.525 0.0052487 699310000 368890 622400 410650 490740 378850 508180 432280 700080 555900 631330 TRUE FALSE FALSE 450948.3078 695184.2658 562566.5236 517547.8836 341130.3638 534787.519 339919.8466 528384.2823 667464.031 473951.0498 0.951465996 1.466784948 1.186971785 1.091985942 0.719758642 1.128360237 0.717204544 1.114849904 1.4082974 1 18.85437854 -5.335077451 3.83933902 1.004883372 1.230167235 0.11657428 0.221789543 0.428478171 12.21664198 0.064090874 0.100666882 4.62E-06 5.335077451 0.225283863 AS(ph)SPCPEFEQFQIVPAVETPYLAR ddPTM_HeLa_A485_30min_R1 4 ASSPCPEFEQFQIVPAVETPYLAR 24 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 AS(0.5)S(0.5)PCPEFEQFQIVPAVETPYLAR;AS(0.5)S(0.5)PCPEFEQFQIVPAVETPYLAR;AS(0.5)S(0.5)PCPEFEQFQIVPAVETPYLAR;AS(0.5)S(0.5)PCPEFEQFQIVPAVETPYLAR ;;; 158.12 3.09E-10 389756000 190142 226292 258219 221856 299991 228136 294073 307127 229368 290544 TRUE FALSE FALSE 232438.4319 252754.8809 353744.9535 233975.4315 270122.8427 240080.8482 231241.9012 231803.6217 275400.0537 218116.7279 1.065660732 1.158805578 1.621814874 1.072707416 1.238432491 1.100698926 1.060174996 1.062750317 1.262626926 1 17.73474089 -5.961166245 1.738110197 1.100233909 1.259108527 0.145393373 0.158732737 0.702203827 4.320885811 0.061098612 0.069482509 1.09E-06 5.961166245 0.158874618 AS(ph)SPCPEFEQFQIVPAVETPYLAR ddPTM_HeLa_A486_30min_R1 2 ASSPCPEFEQFQIVPAVETPYLAR 24 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 AS(0.5)S(0.5)PCPEFEQFQIVPAVETPYLAR;AS(0.542)S(0.458)PCPEFEQFQIVPAVETPYLAR ; 125.58 4.09E-06 298700000 178476 239164 214550 80422 291190 220823 248120 256070 209499 229796 TRUE FALSE FALSE 165965.7541 220211.7736 297629.5058 187226.4803 254666.235 193580.1034 186037.7517 197768.451 227658.542 172253.5859 0.963496656 1.278416194 1.727856662 1.086923557 1.47843793 1.123808845 1.080022519 1.148123854 1.321647621 1 17.39417449 -6.302502359 24.74914399 1.140559619 1.316588363 0.145917962 0.207549061 920.750929 554944.7677 0.073144997 0.064508625 4.98E-07 6.302502359 0.176028744 AS(ph)SPELPVSVENIK ddPTM_HeLa_A486_30min_R1 1 ASSPELPVSVENIK 14 0 Q969R5 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 AS(0.5)S(0.5)PELPVSVENIK 162.93 7.30E-12 48142000 158330 183500 73537 48002 108940 154350 147100 125770 133610 184890 TRUE FALSE FALSE 147231.8846 168958.7917 102012.4958 111751.0819 95275.72937 135307.8663 110294.0241 97134.91654 145191.4224 138592.3406 1.062337818 1.219106272 0.73606157 0.806329422 0.687453065 0.976301185 0.795816159 0.700867856 1.047615054 1 17.080488 -4.759790531 24.99999993 0.82921787 1.140722106 0.469158085 0.125568426 32.04666042 485853.3713 0.030833902 0.073317242 1.74E-05 4.759790531 0.311504236 AS(ph)SPFRR ddPTM_HeLa_A485_30min_R1 3 ASSPFRR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.5)S(0.5)PFRR;AS(0.5)S(0.5)PFRR;AS(0.5)S(0.5)PFRR ;; 98.458 0.002877 1.62E+11 1124030 1569240 1662550 1515480 2123610 1640170 1959430 2220220 1530940 1740670 TRUE FALSE FALSE 1374066.596 1752748.967 2277596.429 1598266.835 1912175.932 1726046.765 1540781.773 1675707.564 1838185.615 1306753.004 1.0515121 1.34130089 1.742943328 1.22308258 1.463303261 1.320866882 1.179091817 1.282344528 1.40668176 1 20.31755504 -6.540182099 8.650240456 1.241633499 1.377919243 0.110963136 0.190680108 0.493946426 203.5055059 0.072550612 0.056956528 2.88E-07 6.540182099 0.136285745 AS(ph)SPFRR ddPTM_HeLa_A486_30min_R1 5 ASSPFRR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.5)S(0.5)PFRR;AS(0.619)S(0.381)PFRR;AS(0.5)S(0.5)PFRR;AS(0.617)S(0.383)PFRR;AS(0.741)S(0.259)PFRR ;;;; 114.5 0.0015226 1.40E+11 3242480 3992930 3649680 1244930 4825030 3673150 4070680 4277980 3298830 3834080 TRUE FALSE FALSE 3015198.896 3676515.685 5062933.838 2898259.955 4219829.746 3219994.099 3052152.809 3303977.342 3584775.24 2874001.412 1.049129233 1.279232386 1.761632342 1.008440686 1.468276852 1.120387097 1.061987233 1.149608809 1.247311579 1 21.45462934 -6.29808813 22.84904441 1.121842335 1.319413316 0.18638053 0.205920814 375.1397967 233882.8128 0.071888196 0.063402973 5.03E-07 6.29808813 0.197570981 AS(ph)SPIKQSHEPVPDTSVEK ddPTM_HeLa_A485_30min_R1 3 ASSPIKQSHEPVPDTSVEK 19 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 AS(0.5)S(0.5)PIKQSHEPVPDTSVEK;AS(0.5)S(0.5)PIKQSHEPVPDTSVEK;AS(0.5)S(0.5)PIKQSHEPVPDTSVEK ;; 260.32 2.32E-58 3164680000 2994460 2644410 1691110 4076810 3860060 4055650 6288000 6842000 2802530 5811800 TRUE FALSE FALSE 3660567.296 2953650.746 2316721.962 4299515.807 3475738.873 4267997.563 4944517.432 5163988.772 3364972.065 4363025.218 0.83899751 0.676973109 0.530989817 0.985443721 0.796635064 0.978219779 1.133277298 1.183579859 0.771247448 1 22.05689738 -5.817422846 1.287286691 1.03162105 0.697272218 0.435061746 0.14536727 0.392050323 1.365555896 0.059489159 0.08033155 1.52E-06 5.817422846 -0.334348831 AS(ph)SPIKQSHEPVPDTSVEK ddPTM_HeLa_A486_30min_R1 3 ASSPIKQSHEPVPDTSVEK 19 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 AS(0.577)S(0.423)PIKQSHEPVPDTSVEK;AS(0.5)S(0.5)PIKQS(0.001)HEPVPDTSVEK;AS(0.578)S(0.422)PIKQSHEPVPDTSVEK ;; 220.69 6.47E-35 2979500000 3052640 2631140 1302940 1690270 2949650 3442090 4750050 4470320 2110000 4720850 TRUE FALSE FALSE 2838665.7 2422638.884 1807473.262 3935033.982 2579677.393 3017439.932 3561537.249 3452525.722 2292896.499 3538718.432 0.802173373 0.684609112 0.510770579 1.11199409 0.728986338 0.852692858 1.006448328 0.975642959 0.647945448 1 21.75479554 -5.252506237 24.99690964 0.897287525 0.667726844 0.359977502 0.144977951 737.4320372 2063493.765 0.038786686 0.065930169 5.59E-06 5.252506237 -0.229560681 AS(ph)SPNLHR ddPTM_HeLa_A486_30min_R1 2 ASSPNLHR 8 0 A0A087X030;P51956-2;P51956;A0A087WY58 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 AS(0.5)S(0.5)PNLHR;AS(0.5)S(0.5)PNLHR ; 90.827 0.0027887 355260000 175950 245940 228040 44689 277640 241190 248360 243300 220140 172195 TRUE FALSE FALSE 163616.8136 226450.8187 316343.1951 104038.2505 242815.8023 211434.43 186217.7011 187905.9012 239221.9124 129076.2512 1.267598122 1.754395689 2.450824162 0.806021631 1.881181085 1.638058342 1.442695301 1.455774393 1.853337932 1 16.97786406 -10.99805778 3.173513541 0.388780925 1.619959135 0.169491786 0.409447392 133703313.2 1632489.169 597163332 0.098244052 1.00E-11 10.99805778 1.23117821 AS(ph)SPNLHRR ddPTM_HeLa_A485_30min_R1 1 ASSPNLHRR 9 1 A0A087X030;P51956-2;P51956;A0A087WY58 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 AS(0.5)S(0.5)PNLHRR 60.641 0.017869 54755000 34078 64647 57755 34495 62003 59945 60391 80741 47691 45879 TRUE FALSE FALSE 41658.53353 72206.9043 79120.97789 36379.3745 55829.76361 63083.62751 47487.9695 60939.14315 57262.14625 34442.20964 1.209519771 2.096465501 2.297209695 1.056243919 1.620969276 1.831578989 1.378772442 1.769315726 1.662557276 1 15.07189008 -11.48143838 0.335674732 3.79E-11 1.706803438 0.228249339 0.359615936 84.41558485 3.350418764 62.61419757 0.309665916 3.30E-12 11.48143838 1.706803438 AS(ph)SPNLHRR ddPTM_HeLa_A486_30min_R1 2 ASSPNLHRR 9 1 A0A087X030;P51956-2;P51956;A0A087WY58 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 AS(0.834)S(0.166)PNLHRR;AS(0.789)S(0.211)PNLHRR ; 95.618 0.0015538 89902000 82907 78143 90908 16862 92364 66416 83751 77313 77199 75278 TRUE FALSE FALSE 77095.64743 71950.66409 126110.0122 39255.58816 80778.84586 58222.26919 62795.61397 59710.51763 83890.67148 56427.89882 1.366268265 1.275090258 2.234887615 0.695676943 1.431540914 1.031799348 1.11284693 1.058173685 1.486687848 1 15.78412101 -5.278642862 24.99806571 1.128522446 1.590382994 0.349358408 0.316788483 936.3204874 1360548.063 0.086128082 0.128100759 5.26E-06 5.278642862 0.461860548 AS(ph)SPNSTVSNTSTEGFGGIMSFASSLYR ddPTM_HeLa_A486_30min_R1 1 ASSPNSTVSNTSTEGFGGIMSFASSLYR 28 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 AS(0.371)S(0.371)PNS(0.081)T(0.081)VS(0.081)NT(0.015)S(0.001)T(0.001)EGFGGIMSFASSLYR 162.07 6.71E-14 16130000 6355.6 8694 8008.9 3411.2 10699 8409.4 9941.4 7899.2 7208.3 8990.7 TRUE FALSE FALSE 5910.10526 8005.055777 11110.16057 7941.445993 9357.031656 7371.933729 7453.956571 6100.724598 7833.121248 6739.3702 0.876952161 1.187804726 1.648545819 1.178366191 1.388413365 1.093860926 1.106031624 0.905236605 1.162292768 1 12.71839806 -6.43455346 5.188285551 1.043100951 1.269412407 0.220110791 0.191372358 0.349644237 15.42373253 0.07103908 0.061728374 3.68E-07 6.43455346 0.226311456 AS(ph)SPPDR ddPTM_HeLa_A486_30min_R1 1 ASSPPDR 7 0 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 AS(0.721)S(0.279)PPDR 69.423 0.02163 495480000 1394200 860530 1496300 562220 883570 3045800 1171800 1279400 3045200 2001800 TRUE FALSE FALSE 1296473.78 792338.4688 2075707.432 1308876.573 772744.4116 2670040.163 878603.246 988108.5491 3309160.388 1500536.25 0.86400697 0.528036873 1.383310421 0.872272544 0.514978836 1.779390643 0.585526172 0.658503617 2.205318523 1 20.51704674 -7.741943496 24.99996778 1.602660123 0.907386427 0.266805981 0.466886931 268.7373818 344609.884 0.301832117 0.113719749 1.81E-08 7.741943496 -0.695273696 AS(ph)SPPDRIDIFGR ddPTM_HeLa_A485_30min_R1 5 ASSPPDRIDIFGR 13 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR ;;;; 197.88 1.08E-21 62183390000 1922140 2942630 2796040 1921310 3609840 3069690 3535080 4218280 2521390 2551930 TRUE FALSE FALSE 2349713.412 3286744.981 3830411.549 2026266.3 3250431.655 3230414.222 2779781.279 3183740.216 3027409.845 1915780.816 1.226504302 1.715616397 1.999399679 1.057671255 1.696661553 1.686212846 1.450991291 1.661849931 1.580248544 1 20.86950108 -10.29033402 4.945609462 0.999822708 1.573349128 0.308805935 0.252740906 0.000478833 6.87E-05 0.237169968 0.057504624 5.12E-11 10.29033402 0.57352642 AS(ph)SPPDRIDIFGR ddPTM_HeLa_A486_30min_R1 6 ASSPPDRIDIFGR 13 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 AS(0.5)S(0.5)PPDRIDIFGR;AS(0.574)S(0.426)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.5)S(0.5)PPDRIDIFGR;AS(0.921)S(0.079)PPDRIDIFGR ;;;;; 179.56 2.35E-17 54299800000 1914290 1987850 1763490 666851 2581000 1753260 2081790 2270270 1515320 2011900 TRUE FALSE FALSE 1780108.156 1830325.526 2446360.556 1552462.829 2257266.913 1536960.607 1560904.123 1753379.081 1646669.158 1508107.145 1.180359209 1.213657486 1.622139756 1.029411494 1.496755002 1.019132236 1.035008771 1.162635617 1.091878096 1 20.5243075 -6.285438188 24.99161306 1.070225516 1.305120995 0.373155629 0.159675344 891.0460826 927904.5279 0.054149417 0.047779253 5.18E-07 6.285438188 0.234895479 AS(ph)SPSEHGPR ddPTM_HeLa_A485_30min_R1 1 ASSPSEHGPR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 AS(0.499)S(0.499)PS(0.003)EHGPR 66.19 0.018013 12775000 22090 30179 26264 22276 27556 25908 30920 34781 33536 31453 TRUE FALSE FALSE 27003.84429 33708.17153 35980.14654 23492.88147 24812.42789 27264.50282 24313.68941 26250.90522 40266.36759 23612.34595 1.143632418 1.427565546 1.523785337 0.994940593 1.050824342 1.154671496 1.029702405 1.111744901 1.705309912 1 14.52725376 -5.261765323 24.99998356 1.145355172 1.37125154 0.174712255 0.214261149 51.05355861 3915927.943 0.059781048 0.09532489 5.47E-06 5.261765323 0.225896368 AS(ph)SPSEHGPR ddPTM_HeLa_A486_30min_R1 2 ASSPSEHGPR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 AS(0.463)S(0.463)PS(0.073)EHGPR;AS(0.476)S(0.476)PS(0.048)EHGPR ; 94.465 0.0025615 74509000 120964 93350 138473 12595.7 125977 123636 116586 93328 138212 79483 TRUE FALSE FALSE 112485.0483 85952.60603 192093.454 29323.42615 110175.79 108383.0474 87414.94968 72079.25174 150192.3274 59579.93945 1.887968489 1.442643393 3.224129729 0.492169452 1.849209499 1.819119797 1.467187622 1.209790617 2.520853979 1 15.86253904 -5.266638374 24.99786563 1.517512579 2.110686796 0.18925476 0.660280114 819.1521951 3938658.342 0.17857365 0.274006496 5.41E-06 5.266638374 0.593174217 AS(ph)SPVEELLTMEDEGNSDMLVVTTK ddPTM_HeLa_A485_30min_R1 1 ASSPVEELLTMEDEGNSDMLVVTTK 25 0 B8ZZD4;Q86VP1-2;Q86VP1 B8ZZD4 TAX1BP1 Tax1-binding protein 1 1 0 AS(0.493)S(0.493)PVEELLT(0.014)MEDEGNS(0.001)DMLVVTTK 66.383 0.0095124 8381000 7660.6 6447.7 3724 8633.8 6498.6 8883.8 9693.1 11276 6770 11076 TRUE FALSE FALSE 9364.674041 7201.702427 5101.662569 9105.442632 5851.576566 9348.942031 7622.09 8510.54332 8128.676902 8314.957039 1.126244429 0.866114208 0.613552487 1.095067911 0.703741046 1.124352415 0.916672205 1.023522224 0.977596981 1 13.02149309 -6.27696974 24.97898071 1.004164104 0.877160809 0.148301921 0.152449966 1643.008375 2642602.203 0.052192079 0.046190648 5.28E-07 6.27696974 -0.127003295 AS(ph)SRPRPDDLEI ddPTM_HeLa_A486_30min_R1 1 ASSRPRPDDLEI 12 2 P17302 P17302 GJA1 Gap junction alpha-1 protein 1 0 AS(0.843)S(0.157)RPRPDDLEI 121.99 5.39E-05 156590000 163410 162590 148220 49125 202950 169310 143990 144000 194920 232290 TRUE FALSE FALSE 151955.8029 149705.7763 205614.7535 114365.4826 177494.1186 148422.2536 107962.179 111214.3435 211815.8225 174123.072 0.872691948 0.8597699 1.180858752 0.656808321 1.019360137 0.852398547 0.620033737 0.638711127 1.21647189 1 17.40974785 -5.27295277 24.89050564 0.839243969 0.95997319 0.058748239 0.19716916 1977.904254 4275977.189 0.055281563 0.082813869 5.33E-06 5.27295277 0.120729221 AS(ph)SRS(ph)PVFTPR ddPTM_HeLa_A485_30min_R1 4 ASSRSPVFTPR 11 1 P52735-3 P52735-3 2 0 AS(0.5)S(0.5)RS(1)PVFTPR;AS(0.5)S(0.5)RS(1)PVFTPR;AS(0.502)S(0.502)RS(0.995)PVFTPR;AS(0.501)S(0.501)RS(0.997)PVFTPR ;;; 100.41 0.0014722 3774320000 878950 1046310 989890 1084310 1328410 1092730 1425370 1473900 967350 1447060 TRUE FALSE FALSE 1074469.395 1168666.853 1356091.504 1143543.11 1196148.836 1149943.653 1120828.055 1112423.714 1161488.272 1086334.573 0.989077787 1.075789063 1.248318462 1.052661986 1.101086963 1.058553858 1.031752172 1.024015751 1.069180988 1 20.05103707 -6.420356149 2.063981454 1.032617782 1.100198705 0.17391231 0.062976481 0.6009548 5.062004111 0.027790332 0.022909889 3.80E-07 6.420356149 0.067580923 AS(ph)STSTPEPTR ddPTM_HeLa_A485_30min_R1 1 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 AS(0.262)S(0.262)T(0.192)S(0.142)T(0.142)PEPTR 87.298 0.0031773 19209000 44365 57572 58092 47004 74119 56382 65392 62395 60490 66632 TRUE FALSE FALSE 54233.84119 64304.54459 79582.64821 49571.7095 66739.45211 59334.07434 51420.465 47092.52842 72629.78815 50021.86867 1.084202622 1.285528636 1.590957122 0.991000753 1.334205496 1.186162691 1.027959698 0.941438808 1.451960714 1 15.61027133 -6.529522727 7.465515019 1.10096102 1.262434049 0.11748907 0.195763805 0.284123922 104.4627634 0.072527974 0.058004537 2.95E-07 6.529522727 0.161473029 AS(ph)STSTPEPTR ddPTM_HeLa_A486_30min_R1 1 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 AS(0.253)S(0.253)T(0.194)S(0.15)T(0.15)PEPTR 63.624 0.02277 10487000 41666 48102 36518 15908 54634 44455 47477 45475 39022 41446 TRUE FALSE FALSE 38745.42856 44290.22234 50658.74759 37034.62795 47781.29428 38970.59409 35597.75244 35121.33521 42404.45838 31067.65183 1.247130899 1.425605726 1.630594673 1.192063956 1.537975723 1.254378487 1.145814065 1.130479233 1.364907094 1 14.92312558 -6.478497595 5.94309038 1.174337579 1.408151615 0.393776456 0.14450334 0.21871854 19.82169201 0.050580084 0.043464713 3.32E-07 6.478497595 0.233814036 AS(ph)SWPHRR ddPTM_HeLa_A485_30min_R1 4 ASSWPHRR 8 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 AS(0.5)S(0.5)WPHRR;AS(0.5)S(0.5)WPHRR;AS(0.5)S(0.5)WPHRR;AS(0.5)S(0.5)WPHRR ;;; 102.62 0.0010496 838820000 438712 600253 553856 422605 642450 573150 650420 737050 537741 626130 TRUE FALSE FALSE 536301.9709 670447.3668 758750.3823 445690.8411 578485.4222 603159.2477 511452.4536 556287.3319 645660.6862 470047.3141 1.140953165 1.426340172 1.614200017 0.948182933 1.230696155 1.283188372 1.088087174 1.18347093 1.373607862 1 18.84244646 -5.260542721 24.99997479 1.171130959 1.39708201 0.310122714 0.160231163 102.5001206 2857791.71 0.044023042 0.070902251 5.49E-06 5.260542721 0.22595105 AS(ph)SWPHRR ddPTM_HeLa_A486_30min_R1 3 ASSWPHRR 8 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 AS(0.5)S(0.5)WPHRR;AS(0.5)S(0.5)WPHRR;AS(0.5)S(0.5)WPHRR ;; 99.688 0.0013458 470550000 352540 350690 314522 80012 423240 327450 366810 365760 289055 365510 TRUE FALSE FALSE 327828.7665 322900.0472 436313.3416 186271.9796 370153.2926 287052.5483 275030.2583 282484.4325 314110.5201 273983.9169 1.196525585 1.178536503 1.592477933 0.679864649 1.351003726 1.047698535 1.003818988 1.031025601 1.146456054 1 18.06373168 -5.249327655 24.999871 1.050547883 1.308115608 0.324508582 0.18764626 976.2257178 2015029.005 0.048887801 0.083884357 5.63E-06 5.249327655 0.257567725 AS(ph)TDNEELLQFPLELCSDSLPSHPFPPAK ddPTM_HeLa_A485_30min_R1 5 ASTDNEELLQFPLELCSDSLPSHPFPPAK 29 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AS(0.863)T(0.137)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.823)T(0.177)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.997)T(0.003)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.5)T(0.5)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.863)T(0.137)DNEELLQFPLELCSDSLPSHPFPPAK ;;;; 273.54 3.20E-77 575567000 242188 207247 178427 259049 301806 231739 297608 291713 232623 375398 TRUE FALSE FALSE 296061.8851 231482.7338 244434.5723 273200.1909 271757.1349 243872.4957 234021.6196 220169.9294 279308.3024 281818.1873 1.050542152 0.82139033 0.867348465 0.969420013 0.964299492 0.865354 0.830399279 0.781248121 0.991093957 1 18.10440519 -6.283292226 23.86961314 0.875995836 0.926508903 0.030782007 0.085438661 1322.28668 1444311.806 0.029839624 0.026342313 5.21E-07 6.283292226 0.050513067 AS(ph)TDNEELLQFPLELCSDSLPSHPFPPAK ddPTM_HeLa_A486_30min_R1 4 ASTDNEELLQFPLELCSDSLPSHPFPPAK 29 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AS(0.842)T(0.158)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.964)T(0.036)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.5)T(0.5)DNEELLQFPLELCSDSLPSHPFPPAK;AS(0.845)T(0.155)DNEELLQFPLELCSDSLPSHPFPPAK ;;; 226.4 7.87E-39 475869200 328715 423252 263102 113091 434553 410799 453183 468889 329059 345094 TRUE FALSE FALSE 305673.776 389711.9701 364982.1405 263281.5633 380047.3107 360118.7961 339791.8201 362133.2105 357582.0991 258680.2162 1.181666617 1.506539525 1.410939522 1.017787781 1.469178108 1.392138917 1.313559363 1.399926194 1.382332612 1 17.9808102 -10.31945965 3.189952506 0.99768151 1.345066922 0.359055983 0.136833568 38487954.46 51518697.22 846009.0206 0.033110816 4.79E-11 10.31945965 0.347385413 AS(ph)TMPR ddPTM_HeLa_A485_30min_R1 1 ASTMPR 6 0 Q9NW64;Q9NW64-2 Q9NW64 RBM22 Pre-mRNA-splicing factor RBM22 1 0 AS(0.909)T(0.091)MPR 94.262 0.014252 99062000 132030 178710 131770 142140 168470 167640 177270 211890 172310 204500 TRUE FALSE FALSE 161399.618 199608.5799 180517.2064 149904.7483 151696.5353 176417.3712 139394.8163 159923.6453 206891.0365 153521.9135 1.051313225 1.300196013 1.175839997 0.976438769 0.988109982 1.149134785 0.90797993 1.04169914 1.347631955 1 17.22808507 -5.148269572 7.278334801 1.055204641 1.19045247 0.148746285 0.127046975 0.451121148 25.97971077 0.034244837 0.059748688 7.11E-06 5.148269572 0.135247829 AS(ph)TPDWVSEGPQPGLR ddPTM_HeLa_A486_30min_R1 1 ASTPDWVSEGPQPGLR 16 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.557)T(0.443)PDWVSEGPQPGLR 85.457 0.001497 46622000 66506 99053 83011 32958 97822 80816 91665 85381 87479 95964 TRUE FALSE FALSE 61844.27284 91203.67954 115155.0823 76727.88961 85552.25261 70845.7436 68729.44747 65941.61015 95061.75015 71933.98978 0.859736448 1.267880175 1.600843811 1.066643041 1.189316106 0.9848716 0.955451626 0.916696132 1.321513661 1 16.134386 -5.917941185 2.08251755 1.029189826 1.239475223 0.123645242 0.202951427 0.597167683 5.275442101 0.073726254 0.085439614 1.21E-06 5.917941185 0.210285397 AS(ph)TPQPAPAGVPALASQHPPEEEVHYHLPVAR ddPTM_HeLa_A485_30min_R1 1 ASTPQPAPAGVPALASQHPPEEEVHYHLPVAR 32 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 AS(0.81)T(0.19)PQPAPAGVPALASQHPPEEEVHYHLPVAR 54.09 0.0081392 1086500000 164620 228470 239430 89081 278730 207770 280280 258190 202960 201430 TRUE FALSE FALSE 201239.1511 255187.5791 328005.1205 93947.26946 250978.6625 218648.5159 220395.8883 194868.4977 243692.2103 151217.208 1.330795309 1.687556478 2.16909917 0.621273668 1.659722896 1.445923508 1.457478889 1.288666152 1.611537559 1 17.2062628 -12.51888094 0.176248348 3.55E-15 1.589483723 0.124686249 0.370473603 161.617476 2.481409608 61.1914481 1.290025204 3.03E-13 12.51888094 1.589483723 AS(ph)TPQPAPAGVPALASQHPPEEEVHYHLPVAR ddPTM_HeLa_A486_30min_R1 2 ASTPQPAPAGVPALASQHPPEEEVHYHLPVAR 32 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 AS(0.79)T(0.21)PQPAPAGVPALASQHPPEEEVHYHLPVAR;AS(0.787)T(0.213)PQPAPAGVPALASQHPPEEEVHYHLPVAR ; 62.16 0.0036002 1267640000 542750 570050 508520 37949 637040 392590 452940 399920 467540 223387 TRUE FALSE FALSE 504706.0278 524877.1619 705432.5626 88347.18984 557136.503 344156.2374 339609.6213 308866.9462 508066.7436 167449.4412 3.014080096 3.134541138 4.212809297 0.527605164 3.32719237 2.055284478 2.028132306 1.84453853 3.034150129 1 17.35336604 -5.239598593 24.99976719 2.07107717 3.421883187 0.39418409 0.834427705 867.2039427 992632.2871 0.21425598 0.370689304 5.76E-06 5.239598593 1.350806016 AS(ph)TPVLK ddPTM_HeLa_A485_30min_R1 1 ASTPVLK 7 0 A0A669KBK8;Q04724;F6T2C8;A0A669KAE5 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 AS(0.5)T(0.5)PVLK 77.732 0.014634 194120000 724200 623390 499420 821120 981380 700020 857270 899690 550580 987890 TRUE FALSE FALSE 885295.7915 696290.0377 684176.2406 865975.7064 883670.3614 736671.9648 674107.2612 679039.6168 661076.3558 741627.2038 1.193720763 0.938867984 0.922533905 1.167669824 1.191529055 0.993318423 0.908957031 0.915607752 0.891386336 1 19.50033464 -6.517950351 7.145044774 0.925513421 1.072927592 0.38074154 0.092372071 0.161420275 51.8256372 0.03677071 0.030069859 3.03E-07 6.517950351 0.147414171 AS(ph)VSGPNSPS(ph)ETRR ddPTM_HeLa_A486_30min_R1 1 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.851)VS(0.149)GPNS(0.108)PS(0.886)ET(0.007)RR 204.99 2.79E-22 1381500000 1224300 1579800 1390600 509190 1804700 1348100 1557900 1688900 1260200 1386400 TRUE FALSE FALSE 1138482.892 1454610.894 1929077.562 1185420.053 1578337.698 1181785.128 1168096.942 1304374.338 1369435.151 1039236.416 1.095499421 1.399691997 1.856245154 1.140664467 1.518747489 1.13716678 1.123995391 1.255127629 1.317732067 1 19.98709246 -6.27143412 24.17818782 1.180074275 1.412730402 0.235560929 0.210894682 710.1570279 1717928.511 0.074204434 0.066266289 5.35E-07 6.27143412 0.232656127 AS(ph)WASSTGYWGEDSEGDTGTIKR ddPTM_HeLa_A486_30min_R1 1 ASWASSTGYWGEDSEGDTGTIKR 23 1 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0YAJ8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 AS(0.996)WAS(0.003)S(0.001)TGYWGEDSEGDTGTIKR 82.089 0.0023249 43444000 32957 31746 22401 15657 32347 26705 37531 39556 23468 35216 TRUE FALSE FALSE 30646.88449 29230.33134 31075.26712 36450.28726 28289.73764 23410.40862 28140.34684 30549.9623 25502.22514 26397.68438 1.160968669 1.107306646 1.177196707 1.380813814 1.071674971 0.886835689 1.066015732 1.157297051 0.966078114 1 14.68812376 -5.983093443 24.99678057 1.022805712 1.200990645 0.488661832 0.092445643 230.9861703 341517.1589 0.030024419 0.034036975 1.04E-06 5.983093443 0.178184933 AS(ph)WES(ph)LDEEWR ddPTM_HeLa_A486_30min_R1 1 ASWESLDEEWR 11 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 2 0 AS(1)WES(1)LDEEWR 85.554 0.0074962 62953000 278450 314620 257980 137170 257630 240300 273340 268150 238030 286080 TRUE FALSE FALSE 258932.0929 289688.3654 357876.7649 319338.6922 225315.6431 210654.2292 204947.4409 207098.0987 258662.6321 214443.7059 1.207459514 1.35088304 1.668861128 1.489149289 1.050698327 0.982328804 0.955716746 0.965745755 1.206202956 1 17.71023945 -5.784956064 7.850235899 1.018281934 1.440826074 0.705939569 0.127059551 0.104195546 26.71640342 0.041745714 0.048462995 1.64E-06 5.784956064 0.42254414 AS(ph)WES(ph)LDEEWRAPQAGSR ddPTM_HeLa_A485_30min_R1 2 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 2 0 AS(1)WES(1)LDEEWRAPQAGSR;AS(1)WES(1)LDEEWRAPQAGSR ; 95.195 0.00060063 141660000 130011 124438 132917 127606 188504 146187 187105 204754 118213 174001 TRUE FALSE FALSE 158931.4984 138989.9416 182088.5294 134576.7927 169735.8799 153841.1253 147128.4882 154537.7605 141937.2648 130625.753 1.216693453 1.064031697 1.393971138 1.03024702 1.299405944 1.177724314 1.126336001 1.183057375 1.086594807 1 16.99507983 -8.072504428 0.83443209 0.99854401 1.194867486 0.268697162 0.099858541 0.948987386 1.476743781 0.089876503 0.03230401 8.46E-09 8.072504428 0.196323476 AS(ph)WES(ph)LDEEWRAPQAGSR ddPTM_HeLa_A486_30min_R1 3 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 2 0 AS(1)WES(1)LDEEWRAPQAGSR;AS(1)WES(1)LDEEWRAPQAGSR;AS(1)WES(1)LDEEWRAPQAGSR ;; 108.25 0.00013515 313285000 286231 355175 282752 144809 401007 318454 388015 424282 279104 341310 TRUE FALSE FALSE 266167.685 327029.6395 392241.1468 337122.6702 350708.9628 279166.3833 290929.543 327682.2506 303296.9594 255843.7544 1.040352482 1.278239683 1.5331277 1.317689662 1.370793528 1.091159657 1.137137561 1.280790502 1.185477285 1 17.96490349 -6.258484227 24.9751485 1.156351442 1.319425902 0.285793942 0.131638408 379.3402956 3205956.809 0.046262866 0.04432728 5.51E-07 6.258484227 0.163074461 AS(ph)WESLDEEWR ddPTM_HeLa_A485_30min_R1 4 ASWESLDEEWR 11 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 AS(0.961)WES(0.039)LDEEWR;AS(0.902)WES(0.098)LDEEWR;AS(0.897)WES(0.103)LDEEWR;AS(1)WESLDEEWR ;;; 282.05 5.53E-35 339309000 325173 382919 315067 396300 352544 301714 385046 391997 344394 483654 TRUE FALSE FALSE 397506.612 427698.0461 431623.3943 417948.8655 317443.4815 317511.2785 302777.7766 295859.1211 413510.7168 363087.9588 1.094794257 1.177946103 1.188757115 1.151095362 0.8742881 0.874474823 0.833896496 0.814841456 1.138872019 1 18.46995956 -5.75597442 24.71526011 0.906616562 1.157463051 0.600119967 0.091552701 74.27477968 335905.0614 0.027146687 0.034023482 1.75E-06 5.75597442 0.250846489 AS(ph)WESLDEEWR ddPTM_HeLa_A486_30min_R1 3 ASWESLDEEWR 11 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 AS(1)WESLDEEWR;AS(0.717)WES(0.283)LDEEWR;AS(0.946)WES(0.054)LDEEWR ;; 270.32 1.24E-28 215817000 209433 228201 149584 93839 200536 228701 245430 251375 183375 252734 TRUE FALSE FALSE 194752.8282 210117.5217 207506.9308 218461.9344 175382.905 200486.1959 184020.8181 194142.4 199270.0926 189447.7614 1.028002795 1.109105329 1.095325325 1.153151311 0.925758656 1.058266376 0.97135388 1.02478065 1.051847175 1 17.53144057 -5.751140511 24.99918258 1.007521049 1.097227484 0.486748774 0.045773102 180.3989072 437893.182 0.013119427 0.016745576 1.77E-06 5.751140511 0.089706435 AS(ph)WPSVQQGLQQSFLHTLDSYR ddPTM_HeLa_A486_30min_R1 1 ASWPSVQQGLQQSFLHTLDSYR 22 0 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 AS(0.993)WPS(0.007)VQQGLQQSFLHTLDSYR 86.869 0.0014144 26099000 32693 44398 65569 6947.5 89521 38312 38192 54998 44714 17463 TRUE FALSE FALSE 30401.38953 40879.74079 90959.0728 16174.13111 78292.44143 33585.45497 28635.95765 42476.156 48589.84552 13090.15113 2.322462836 3.122938793 6.948664829 1.235595444 5.981018907 2.565704141 2.187595647 3.244894238 3.71193923 1 13.67619413 ASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELS(ph)PEEQR ddPTM_HeLa_A485_30min_R1 1 ASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELSPEEQR 43 2 C9JQV0;Q9BRJ6 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 0 ASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELS(1)PEEQR 204.97 5.08E-31 158990000 58891 85755 75911 62733 120630 106830 153910 208890 77185 119650 TRUE FALSE FALSE 71991.09978 95783.30128 103993.6378 66159.94494 108619.6536 112423.4536 121025.8712 157659.4 92675.32152 89823.457 0.80147327 1.066350645 1.157755906 0.736555318 1.209257106 1.251604618 1.347374898 1.755214119 1.031749663 1 16.45480463 -5.954291797 7.115348204 1.318460773 0.964344051 0.327929732 0.224958032 0.233216262 28.81288127 0.06927985 0.078368268 1.11E-06 5.954291797 -0.354116721 ASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELS(ph)PEEQR ddPTM_HeLa_A486_30min_R1 1 ASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELSPEEQR 43 2 C9JQV0;Q9BRJ6 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 0 ASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELS(1)PEEQR 120.13 1.31E-07 151020000 75121 74807 66750 33898 125900 87170 100460 113000 63541 99259 TRUE FALSE FALSE 69855.40583 68879.02088 92597.38763 78916.25711 110108.448 76415.85168 75323.84544 87272.36677 69048.78504 74403.90033 0.938867526 0.92574476 1.244523301 1.060646777 1.479874678 1.027040939 1.012364205 1.172954192 0.928026417 1 16.18309063 -12.68374985 12.01213183 0.035691088 1.091479069 0 0.166768486 0 0 0 0.038434692 2.07E-13 12.68374985 1.055787981 ASAGHVAVSS(ph)PTPETGPLQR ddPTM_HeLa_A485_30min_R1 1 ASAGHVAVSSPTPETGPLQR 20 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 ASAGHVAVS(0.025)S(0.968)PT(0.006)PETGPLQR 87.468 0.00052181 435230000 92559 180820 191570 76455 225220 140300 171950 189040 149730 148900 TRUE FALSE FALSE 113148.4302 201965.3261 262439.7149 80631.54306 202796.306 147645.8911 135211.4778 142677.6436 179779.4376 111781.9703 1.012224332 1.806779085 2.347782153 0.721328698 1.814213021 1.320838152 1.209600058 1.276392277 1.608304426 1 16.77032798 -5.263681112 24.99984113 1.311378083 1.730713546 0.192546915 0.412381105 346.687832 3866283.907 0.112741802 0.176837843 5.45E-06 5.263681112 0.419335463 ASAGTPSLSAGVS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ASAGTPSLSAGVSPK 15 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 ASAGTPSLSAGVS(1)PK;ASAGTPSLSAGVS(1)PK ; 222.51 1.25E-33 269680000 388230 358280 264831 593350 488090 407320 614150 557650 327130 803160 TRUE FALSE FALSE 474590.4241 400177.7294 362803.0074 625763.2081 439494.0458 428646.6454 482931.8354 420885.4631 392781.9904 602946.9931 0.787117988 0.663703002 0.601716256 1.037841162 0.728909922 0.710919285 0.80095239 0.698047205 0.651437017 1 19.20167165 -10.79301158 2.702921143 1.070678625 0.743647703 0.314690273 0.114074337 67264360.65 51211510.15 31316689.5 0.028740088 1.61E-11 10.79301158 -0.327030922 ASAGTPSLSAGVS(ph)PK ddPTM_HeLa_A486_30min_R1 3 ASAGTPSLSAGVSPK 15 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 ASAGTPSLSAGVS(1)PK;ASAGTPSLSAGVS(1)PK;ASAGTPSLSAGVS(1)PK ;; 208.85 5.66E-23 324880000 628910 609660 316423 428890 581740 683760 943430 880740 486270 1173030 TRUE FALSE FALSE 584826.6567 561348.3213 438950.4597 998477.5949 508772.7447 599404.6432 707373.8354 680214.7284 528420.2751 879295.6529 0.665108095 0.638406797 0.499206903 1.135542513 0.578613966 0.681687259 0.804477803 0.77359046 0.600958589 1 19.74598881 -11.58204469 2.187690816 6.385288919 0.713067734 0.216585075 0.166055897 4416157.038 294181.0604 119058495.8 0.040523198 2.62E-12 11.58204469 -5.672221185 ASALLFS(ph)SDEEDQWNIPASQTHLASDSR ddPTM_HeLa_A485_30min_R1 2 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AS(0.001)ALLFS(0.54)S(0.459)DEEDQWNIPASQTHLASDSR;ASALLFS(0.549)S(0.451)DEEDQWNIPASQTHLASDSR ; 199.29 1.72E-28 982140000 50566 75080 94793 41610 101970 76395 83736 89734 77802 85554 TRUE FALSE FALSE 61814.23225 83859.95289 129860.8754 43883.04894 91817.50876 80394.92407 65845.11954 67726.5958 93416.14776 64226.9623 0.962434312 1.305681444 2.021905921 0.683249641 1.429578879 1.25173169 1.02519436 1.054488541 1.454469344 1 15.97089144 -5.281706646 24.97904548 1.14404718 1.417574876 0.155002178 0.320874786 1611.458844 1986090.637 0.089701653 0.133239589 5.23E-06 5.281706646 0.273527696 ASALLFS(ph)SDEEDQWNIPASQTHLASDSR ddPTM_HeLa_A486_30min_R1 1 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AS(0.001)ALLFS(0.54)S(0.46)DEEDQWNIPASQTHLASDSR 140.24 3.94E-07 88444000 32647 31570 35949 7324.7 47195 32515 39195 44104 38211 30143 TRUE FALSE FALSE 30358.61389 29068.27822 49869.41555 17052.27177 41275.36302 28503.62989 29387.99644 34062.48198 41523.16025 22594.9966 1.343598958 1.286491817 2.207099936 0.75469238 1.826747919 1.261501844 1.300641773 1.507523218 1.837714826 1 14.46371572 -5.25994862 24.99937577 1.390120049 1.579806318 0.077074832 0.389949253 482.1196819 8084870.566 0.103983756 0.168221022 5.50E-06 5.25994862 0.189686269 ASALLFSS(ph)DEEDQWNIPASQTHLASDSR ddPTM_HeLa_A485_30min_R1 4 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 ASALLFS(0.139)S(0.861)DEEDQWNIPASQTHLASDSR;ASALLFS(0.172)S(0.827)DEEDQWNIPASQTHLASDSR;ASALLFS(0.046)S(0.954)DEEDQWNIPASQTHLASDSR;ASALLFS(0.151)S(0.849)DEEDQWNIPASQTHLASDSR ;;; 215.82 2.65E-38 1202900000 174750 290520 307542 146792 348978 235042 297574 292590 277139 298393 TRUE FALSE FALSE 213622.5346 324493.7868 421314.5837 154810.8753 314232.525 247348.4357 233994.8839 220831.8437 332758.2552 224009.1166 0.953633217 1.448574021 1.88079213 0.691091852 1.402766681 1.104189148 1.044577504 0.985816323 1.485467468 1 17.77319792 -5.264780459 24.99964496 1.11162821 1.429757195 0.204346525 0.294056057 471.1231226 3525184.814 0.080505492 0.125120343 5.44E-06 5.264780459 0.318128985 ASALLFSS(ph)DEEDQWNIPASQTHLASDSR ddPTM_HeLa_A486_30min_R1 5 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 ASALLFS(0.203)S(0.797)DEEDQWNIPASQTHLASDSR;ASALLFS(0.053)S(0.946)DEEDQWNIPASQTHLASDSR;ASALLFS(0.319)S(0.681)DEEDQWNIPASQTHLASDSR;ASALLFS(0.124)S(0.876)DEEDQWNIPASQTHLASDSR;ASALLFS(0.146)S(0.853)DEEDQWNIPASQTHLASDSR ;;;; 278.5 2.88E-77 2427110000 485551 487873 436394 42527.3 593108 404559 491025 474692 485627 371949 TRUE FALSE FALSE 451516.3823 449212.1667 605377.4438 99005.70361 518714.8641 354648.6238 368165.3515 366614.9941 527721.5394 278810.5494 1.619437942 1.611173493 2.171286004 0.355100278 1.860456375 1.272005757 1.320485729 1.314925116 1.892760301 1 18.08892562 ASAPERT(ph)PS(ph)PAPK ddPTM_HeLa_A485_30min_R1 4 ASAPERTPSPAPK 13 1 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 2 0 ASAPERT(1)PS(1)PAPK;AS(0.013)APERT(0.987)PS(1)PAPK;ASAPERT(1)PS(1)PAPK;AS(0.001)APERT(0.999)PS(1)PAPK ;;; 113.29 0.0002171 2212550000 3065650 2914190 2547550 3760200 4043360 3490860 4462490 4413020 3193510 5128190 TRUE FALSE FALSE 3747593.266 3254979.17 3489994.757 3965610.205 3640788.881 3673636.032 3509042.556 3330719.926 3834418.164 3849826.61 0.973444689 0.845487213 0.906532972 1.030075015 0.945702041 0.954234152 0.911480675 0.865161022 0.995997626 1 21.87636204 ASAPERT(ph)PS(ph)PAPK ddPTM_HeLa_A486_30min_R1 3 ASAPERTPSPAPK 13 1 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 2 0 AS(0.128)APERT(0.875)PS(0.997)PAPK;ASAPERT(1)PS(1)PAPK;AS(0.012)APERT(0.988)PS(1)PAPK ;; 140.03 4.56E-05 758660000 1343140 1455590 884300 631390 1446550 1447630 1672700 1586960 1099960 1657270 TRUE FALSE FALSE 1248992.822 1340243.747 1226724.642 1469907.829 1265110.21 1269036.129 1254172.768 1225643.851 1195305.418 1242278.805 1.005404598 1.078859063 0.98747933 1.183235054 1.018378648 1.021538904 1.00957431 0.986609323 0.962187726 1 20.24455756 -6.577570322 1.593848333 0.984025914 1.059336333 0.27483681 0.05114203 0.504583078 2.605878166 0.02561857 0.018151324 2.65E-07 6.577570322 0.075310419 ASAPERT(ph)PS(ph)PAPKR ddPTM_HeLa_A485_30min_R1 1 ASAPERTPSPAPKR 14 2 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 2 0 AS(0.003)APERT(0.997)PS(1)PAPKR 55.864 0.032565 202790000 226780 228180 195600 210600 295730 298660 355060 389740 209850 277840 TRUE FALSE FALSE 277226.4286 254863.6661 267960.5796 222104.5447 266286.0828 314297.3758 279198.5304 294155.6539 251964.9701 208579.6013 1.329115728 1.221901205 1.284692165 1.064843079 1.276664071 1.506846182 1.33857064 1.410280066 1.208003892 1 17.67023855 -5.999226497 24.99999099 1.329081299 1.22185982 0.017972617 0.141895692 60.49900607 1955250.201 0.042452384 0.047734105 1.00E-06 5.999226497 -0.107221479 ASAPS(ph)PNAQVACDHCLK ddPTM_HeLa_A485_30min_R1 6 ASAPSPNAQVACDHCLK 17 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 AS(0.003)APS(0.997)PNAQVACDHCLK;AS(0.005)APS(0.995)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;AS(0.007)APS(0.993)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;AS(0.094)APS(0.906)PNAQVACDHCLK ;;;;; 284.99 5.00E-60 18281280000 8538230 8854130 7641900 9129140 9934060 9727540 12250020 12777290 7842350 10822310 TRUE FALSE FALSE 10437529.81 9889543.483 10468956.82 9627841.802 8944990.106 10236858.95 9632703.154 9643639.593 9416237.711 8124507.287 1.284696959 1.217248398 1.288565133 1.185037007 1.100988625 1.25999751 1.185635364 1.186981469 1.158991848 1 22.95384889 -14 0.126674344 0.31010977 1.298064387 0.670228616 0.04779137 93.23176502 0.750909246 16.33758278 0.408119932 1.00E-14 14 0.987954617 ASAPS(ph)PNAQVACDHCLK ddPTM_HeLa_A486_30min_R1 7 ASAPSPNAQVACDHCLK 17 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 ASAPS(1)PNAQVACDHCLK;AS(0.046)APS(0.954)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;AS(0.006)APS(0.994)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK;ASAPS(1)PNAQVACDHCLK ;;;;;; 304.43 4.32E-69 13823130000 9811260 11634530 7788569 3653495 10429720 10539400 12346950 11325570 8950800 12913340 TRUE FALSE FALSE 9123541.339 10712567.47 10804511.5 8505520.997 9121527.264 9239155.985 9257612.517 8746984.946 9726662.551 9679755.612 0.942538397 1.106698134 1.116196724 0.878691709 0.942330326 0.95448236 0.956389075 0.903636961 1.00484588 1 23.20653919 -5.258321547 24.99988253 0.944915319 1.060299789 0.424301548 0.056648344 238.6493628 1913565.928 0.015205345 0.024947133 5.52E-06 5.258321547 0.11538447 ASAS(ph)PDRIPSLPQETVDQEPK ddPTM_HeLa_A485_30min_R1 1 ASASPDRIPSLPQETVDQEPK 21 1 A0A494C1R1;A0A2R8Y5U1;Q76L82;Q8IXJ9 A0A494C1R1 ASXH1;ASXL1 Putative Polycomb group protein ASXL1 1 0 AS(0.026)AS(0.974)PDRIPSLPQETVDQEPK 228.46 3.05E-36 794370000 268270 276380 195750 377680 333250 286510 432200 413610 274730 556590 TRUE FALSE FALSE 327945.736 308700.2368 268166.0708 398311.7021 300070.4599 301511.2206 339856.9393 312171.499 329865.791 417842.3563 0.784855176 0.738795941 0.641787667 0.953258319 0.718142753 0.721590849 0.813361628 0.747103529 0.789450342 1 18.67259922 -8.176743007 5.273835033 0.999999397 0.764902089 0.456782757 0.076449511 3.036913865 90.2018433 0.071898335 0.018708218 6.66E-09 8.176743007 -0.235097308 ASAS(ph)PSTSSTSSRPK ddPTM_HeLa_A485_30min_R1 4 ASASPSTSSTSSRPK 15 1 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;F5H858 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 AS(0.009)AS(0.701)PS(0.201)T(0.081)S(0.006)S(0.001)T(0.001)SSRPK;ASAS(0.954)PS(0.044)T(0.001)SSTSSRPK;ASAS(0.452)PS(0.452)T(0.088)S(0.006)S(0.001)TSSRPK;ASAS(0.816)PS(0.184)TSSTSSRPK ;;; 267.62 3.26E-51 1978880000 1298770 1424420 1144600 1452330 1560550 1538960 1885470 2074260 1325550 2135390 TRUE FALSE FALSE 1587676.906 1590993.528 1568035.171 1531667.11 1405176.163 1619537.566 1482623.932 1565544.483 1591575.726 1603076.572 0.99039368 0.992462591 0.978141156 0.955454741 0.876549622 1.010268377 0.92486158 0.976587463 0.992825767 1 20.61241191 -7.635749808 3.782933902 0.996613722 0.960854952 0.1293409 0.036203592 0.498858342 12.94061904 0.029201587 0.009594146 2.31E-08 7.635749808 -0.03575877 ASAS(ph)PSTSSTSSRPK ddPTM_HeLa_A486_30min_R1 4 ASASPSTSSTSSRPK 15 1 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;F5H858 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASAS(0.749)PS(0.245)T(0.006)SSTSSRPK;AS(0.002)AS(0.967)PS(0.022)T(0.007)S(0.002)STSSRPK;AS(0.002)AS(0.498)PS(0.498)T(0.001)SSTSSRPK;AS(0.02)AS(0.861)PS(0.098)T(0.018)S(0.003)S(0.001)TSSRPK ;;; 199.39 1.43E-25 1975770000 885204 949457 653693 338934 1037208 914453 1065863 1085844 816580 1139130 TRUE FALSE FALSE 823155.7708 874218.5695 906820.4361 789055.4808 907111.7011 801637.0863 799172.8039 838621.025 887361.8119 853884.4335 0.964013089 1.023813686 1.061994341 0.924077603 1.062335447 0.938812156 0.935926189 0.982124737 1.039205983 1 19.7036813 -5.247820317 24.99620994 0.981943534 1.017327694 0.094670878 0.047195255 1900.081087 3487371.526 0.012771148 0.021972702 5.65E-06 5.247820317 0.035384161 ASASPS(ph)TSSTSSRPK ddPTM_HeLa_A485_30min_R1 1 ASASPSTSSTSSRPK 15 1 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;F5H858 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASAS(0.436)PS(0.491)T(0.043)S(0.004)S(0.007)T(0.014)S(0.002)S(0.004)RPK 131.24 0.00023052 74914000 58725 71741 55092 72731 77319 71622 89510 103800 62168 108650 TRUE FALSE FALSE 71788.17365 80130.48589 75472.82337 76704.11037 69620.84888 75372.01717 70385.45727 78342.88725 74644.54736 81565.55456 0.880128555 0.982405947 0.925302645 0.940398319 0.853556986 0.924066753 0.862931144 0.96048985 0.915147917 1 16.3156724 -8.57924103 1.133249592 0.999930106 0.915089779 0.297417902 0.038849628 3.392694498 5.454722022 0.03745469 0.01141044 2.63E-09 8.57924103 -0.084840327 ASASRPQPAPADGADPPPAEEPEARPDGEGS(ph)PGK ddPTM_HeLa_A485_30min_R1 2 ASASRPQPAPADGADPPPAEEPEARPDGEGSPGK 34 2 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK ; 136.33 5.30E-07 4966000000 2080030 1844050 1362830 2899290 2469960 2179720 3265290 2943310 1763960 3914500 TRUE FALSE FALSE 2542725.497 2059695.606 1866997.529 3057670.871 2224042.11 2293846.769 2567634.117 2221458.608 2117970.592 2938687.191 0.865258985 0.700889708 0.635316864 1.040488719 0.756814851 0.780568539 0.87373509 0.755935717 0.720719986 1 21.48674037 -10.96822751 2.567809977 1.172235463 0.792145143 0.253592662 0.106955445 16792332.79 9113787.321 17214760.71 0.027119857 1.08E-11 10.96822751 -0.38009032 ASASRPQPAPADGADPPPAEEPEARPDGEGS(ph)PGK ddPTM_HeLa_A486_30min_R1 3 ASASRPQPAPADGADPPPAEEPEARPDGEGSPGK 34 2 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK ;; 146.7 8.74E-10 6077490000 2756960 2597000 1638730 1710350 2575170 3064600 4141090 3775310 2201770 4591200 TRUE FALSE FALSE 2563711.341 2391204.262 2273290.143 3981781.236 2252168.166 2686520.811 3104945.482 2915754.327 2392621.196 3441533.636 0.744932815 0.694807756 0.66054567 1.156978736 0.654408297 0.780617334 0.902198209 0.847225288 0.695219472 1 21.71462018 -14 0.150376191 1.65777873 0.740075107 0.147879772 0.144290966 281.5516796 2.508586176 56.45854493 0.734783092 1.00E-14 14 -0.917703622 ASAVSELS(ph)PR ddPTM_HeLa_A485_30min_R1 11 ASAVSELSPR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVS(0.003)ELS(0.997)PR ;;;;;;;;;; 194.8 2.06E-10 1.79E+11 5533350 7980700 8194420 6031790 9147370 7658030 8601280 9489050 7427310 8094610 TRUE FALSE FALSE 6764224.618 8913973.442 11225876.96 6361291.414 8236625.724 8058992.609 6763546.262 7161845.609 8917902.99 6076772.697 1.113127799 1.466892689 1.847341922 1.046820694 1.355427648 1.326196159 1.113016168 1.178560721 1.467539339 1 22.5348739 -5.297407256 24.99982011 1.226495147 1.474898632 0.241416171 0.212856943 863.4810621 600169.0015 0.059764294 0.088648431 5.04E-06 5.297407256 0.248403485 ASAVSELS(ph)PR ddPTM_HeLa_A486_30min_R1 11 ASAVSELSPR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR ;;;;;;;;;; 194.8 2.06E-10 1.61E+11 7001780 7864310 7349340 2411307 9047710 6846220 7958290 8195960 6796400 7632880 TRUE FALSE FALSE 6510991.379 7241113.434 10195201.27 5613644.557 7912861.845 6001602.984 5967041.668 6329918.825 7385517.424 5721557.166 1.137975413 1.26558439 1.781892756 0.981139294 1.382990961 1.048945734 1.042905191 1.106327987 1.290822972 1 22.44797641 ASAVTAMGQLSSQGLHAPT(ph)SPEHAEAR ddPTM_HeLa_A485_30min_R1 1 ASAVTAMGQLSSQGLHAPTSPEHAEAR 27 0 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 0 ASAVTAMGQLSSQGLHAPT(0.5)S(0.5)PEHAEAR 250.21 3.12E-50 650330000 23512 38288 51782 17704 48083 35463 42409 51583 36544 28516 TRUE FALSE FALSE 28742.16328 42765.44854 70938.31663 18671.12469 43295.68769 37319.78784 33347.9707 38932.18837 43878.0456 21407.486 1.342622076 1.997686629 3.313715428 0.872177363 2.022455495 1.743305489 1.557771459 1.81862496 2.049658965 1 14.38582776 -5.28721173 24.99107633 1.63892257 2.195976709 0.196833738 0.581254722 1339.844888 1299225.277 0.162199367 0.240678208 5.16E-06 5.28721173 0.557054139 ASAVTAMGQLSSQGLHAPT(ph)SPEHAEAR ddPTM_HeLa_A486_30min_R1 1 ASAVTAMGQLSSQGLHAPTSPEHAEAR 27 0 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 0 ASAVTAMGQLSSQGLHAPT(0.5)S(0.5)PEHAEAR 244.14 1.16E-49 265260000 44194 53861 54122 18709 78428 45419 47496 52371 53183 38815 TRUE FALSE FALSE 41096.22882 49592.8582 75079.48784 43555.4975 68590.82893 39815.66557 35611.99844 40447.26655 57792.94526 29095.47136 1.412461352 1.70448719 2.580452707 1.496985458 2.357440032 1.368448893 1.223970494 1.390156772 1.986320983 1 14.828507 -6.300005851 24.82162477 1.407551014 1.913189299 0.288023685 0.405797466 691.7692024 445224.8585 0.140781692 0.124159924 5.01E-07 6.300005851 0.505638285 ASAVTAMGQLSSQGLHAPTS(ph)PEHAEAR ddPTM_HeLa_A485_30min_R1 1 ASAVTAMGQLSSQGLHAPTSPEHAEAR 27 0 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 0 ASAVTAMGQLSSQGLHAPT(0.16)S(0.84)PEHAEAR 290.45 5.40E-92 461920000 46492 66317 76103 45146 85728 49662 65503 70964 58134 61072 TRUE FALSE FALSE 56833.985 74072.19627 104256.6666 47612.21166 77192.61931 52262.22553 51507.74894 53559.96773 69800.96056 45847.87435 1.239620938 1.615608081 2.273969472 1.038482424 1.683668445 1.139905094 1.123449008 1.168210489 1.522447039 1 15.48456723 -5.871668157 1.426062981 1.207452622 1.647539554 0.224204019 0.331470165 0.60954183 2.579986755 0.13061156 0.163872607 1.34E-06 5.871668157 0.440086932 ASCGPPS(ph)LPDPTFLPDAER ddPTM_HeLa_A485_30min_R1 1 ASCGPPSLPDPTFLPDAER 19 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 AS(0.06)CGPPS(0.94)LPDPTFLPDAER 95.347 0.00010133 0 13468 12803 20222 12171 24399 18866 22378 19651 12004 19906 TRUE FALSE FALSE 16463.91014 14300.19948 27702.95931 12835.87091 21969.74989 19853.79459 17596.75749 14831.56144 14413.09269 14943.80054 1.101721753 0.956931902 1.853809493 0.858942869 1.470158132 1.328563944 1.177528932 0.992489253 0.96448642 1 13.86725948 -7.158375227 3.163620724 0.979690762 1.265385797 0.18214165 0.260910751 0.447016308 8.470305129 0.138400582 0.071750043 6.94E-08 7.158375227 0.285695035 ASDPAS(ph)PHIGR ddPTM_HeLa_A485_30min_R1 1 ASDPASPHIGR 11 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 ASDPAS(1)PHIGR 95.631 0.0014669 720540000 631260 977180 977930 674620 1103800 958680 928170 1104300 907310 928740 TRUE FALSE FALSE 771681.6092 1091452.701 1339707.002 711472.7824 993901.7963 1008875.002 729858.897 833468.6935 1089398.795 697222.2102 1.106794359 1.565430195 1.921492148 1.020439068 1.425516545 1.44699206 1.046809592 1.195413286 1.562484354 1 19.411259 -5.282360267 24.99284615 1.258654031 1.534658157 0.207417099 0.257256281 1294.59647 1546568.644 0.072555843 0.107739448 5.22E-06 5.282360267 0.276004126 ASDPAS(ph)PHIGR ddPTM_HeLa_A486_30min_R1 2 ASDPASPHIGR 11 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 ASDPAS(1)PHIGR;ASDPAS(1)PHIGR ; 131.35 2.86E-05 895560000 1800810 2185510 1921200 485970 2450100 1783650 1909200 2022870 1803970 1851770 TRUE FALSE FALSE 1674582.518 2012322.228 2665140.092 1131362.72 2142785.612 1563601.398 1431497.967 1562306.66 1960339.572 1388074.739 1.206406594 1.449721814 1.920026362 0.815058936 1.543710545 1.12645332 1.031283062 1.125520562 1.412272349 1 20.40465382 -5.266517436 24.99948004 1.166244341 1.517818605 0.314489269 0.252749092 530.5924094 2612129.717 0.069509447 0.106705736 5.41E-06 5.266517436 0.351574264 ASDPQS(ph)PPQVSR ddPTM_HeLa_A485_30min_R1 3 ASDPQSPPQVSR 12 0 Q7L7X3-3;Q7L7X3;Q7L7X3-2 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 ASDPQS(1)PPQVSR;ASDPQS(1)PPQVSR;AS(0.004)DPQS(0.996)PPQVSR ;; 161.21 3.07E-10 450570000 542679 692042 696606 539619 772651 666602 760667 830241 616013 809603 TRUE FALSE FALSE 663396.0713 772970.2919 954309.5476 569097.0196 695723.1535 701504.25 598144.2814 626623.093 739641.1587 607783.8717 1.091499959 1.271784804 1.570146218 0.936347682 1.14468841 1.154200173 0.984139773 1.03099658 1.216947657 1 19.21319887 -5.282537502 24.99665929 1.071499412 1.307207844 0.406360752 0.135249002 799.8973421 947701.4204 0.038256525 0.056805593 5.22E-06 5.282537502 0.235708432 ASDPQS(ph)PPQVSR ddPTM_HeLa_A486_30min_R1 1 ASDPQSPPQVSR 12 0 Q7L7X3-3;Q7L7X3;Q7L7X3-2 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 ASDPQS(1)PPQVSR 196.97 6.01E-17 445330000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 ASDSGPSSSSSSSS(ph)SPPRTPFPYITCHR ddPTM_HeLa_A485_30min_R1 1 ASDSGPSSSSSSSSSPPRTPFPYITCHR 28 1 Q16643-3 Q16643-3 DBN1 Drebrin 1 0 ASDSGPS(0.001)S(0.001)S(0.003)S(0.003)S(0.006)S(0.024)S(0.093)S(0.371)S(0.371)PPRT(0.093)PFPY(0.032)IT(0.003)CHR 64.289 0.0080812 167040000 8091 15130 14684 13105 22481 17867 18761 25322 12952 13976 TRUE FALSE FALSE 9890.815036 16899.32189 20116.22265 13820.89297 20242.7127 18802.48849 14752.55909 19111.7398 15551.3476 10492.04041 0.942697002 1.610680214 1.917284138 1.317274088 1.929339949 1.792071681 1.406071509 1.82154653 1.482204318 1 13.35700765 -8.025561886 22.69735608 0.999999988 1.608980264 0.268743213 0.290962063 939.2338986 833981.8143 0.273421964 0.070597247 9.43E-09 8.025561886 0.608980276 ASDSGPSSSSSSSSS(ph)PPRTPFPYITCHR ddPTM_HeLa_A485_30min_R1 1 ASDSGPSSSSSSSSSPPRTPFPYITCHR 28 1 Q16643-3 Q16643-3 DBN1 Drebrin 1 0 ASDSGPSSSSSSS(0.001)S(0.156)S(0.815)PPRT(0.028)PFPYITCHR 143.96 2.97E-09 270840000 11928 16014 15989 10084 19698 14629 19040 27057 14970 16878 TRUE FALSE FALSE 14581.34245 17886.698 21903.99646 10634.86339 17736.79796 15394.95182 14971.94846 20421.22833 17974.34169 12670.62522 1.15079897 1.411666567 1.728722623 0.839332172 1.39983605 1.215011221 1.181626652 1.611698553 1.418583644 1 13.62920009 -5.224365129 24.99885035 1.266934374 1.428522866 0.108385126 0.243131354 1594.160315 1074926.477 0.066341822 0.114902815 5.97E-06 5.224365129 0.161588493 ASDSGPSSSSSSSSS(ph)PPRTPFPYITCHR ddPTM_HeLa_A486_30min_R1 1 ASDSGPSSSSSSSSSPPRTPFPYITCHR 28 1 Q16643-3 Q16643-3 DBN1 Drebrin 1 0 ASDSGPSSSS(0.001)S(0.008)S(0.025)S(0.038)S(0.19)S(0.678)PPRT(0.054)PFPY(0.005)IT(0.001)CHR 101.04 0.00055913 216160000 16584 18580 20458 9206.2 27372 15734 19355 22591 16013 24111 TRUE FALSE FALSE 15421.54724 17107.65313 28379.88548 21432.49886 23938.74853 13792.89905 14512.17428 17447.52246 17401.01973 18073.44866 0.853270869 0.946562742 1.570252917 1.18585552 1.324525771 0.763158117 0.80295546 0.965367639 0.962794653 1 14.1415842 -6.262759307 24.99969056 0.890696918 1.185781925 0.334007325 0.195331242 147.957502 2802315.477 0.071367616 0.066399879 5.46E-07 6.262759307 0.295085007 ASDSSS(ph)PSCSSGPR ddPTM_HeLa_A485_30min_R1 2 ASDSSSPSCSSGPR 14 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 ASDSS(0.026)S(0.973)PSCSSGPR;ASDSS(0.029)S(0.969)PS(0.001)CSSGPR ; 289.88 8.28E-58 766830000 733630 890370 1059980 787300 1212490 951290 1080380 1046230 1051260 1196510 TRUE FALSE FALSE 896823.4625 994491.0263 1452110.711 830308.2055 1091770.238 1001098.073 849547.9871 789640.4521 1262238.239 898242.0771 0.998420677 1.107152572 1.616613994 0.924370197 1.215452122 1.114508103 0.945789569 0.879095371 1.405231698 1 19.77674478 -6.000357807 1.46007766 1.054697081 1.19976699 0.04922738 0.216528589 1.192139039 5.211814215 0.089281037 0.099857455 9.99E-07 6.000357807 0.145069909 ASDSSS(ph)PSCSSGPR ddPTM_HeLa_A486_30min_R1 2 ASDSSSPSCSSGPR 14 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 ASDSS(0.002)S(0.998)PSCSSGPR;ASDSSS(1)PSCSSGPR ; 313.9 9.46E-69 890540000 1139600 1440910 1327250 477550 1639620 1307150 1409410 1482090 1255740 1343460 TRUE FALSE FALSE 1059719.925 1326727.044 1841196.745 1111760.534 1433963.571 1145887.123 1056760.711 1144650.461 1364588.554 1007048.872 1.052302381 1.317440575 1.828309228 1.10397873 1.423926496 1.137866449 1.04936388 1.136638442 1.355037072 1 19.94170227 -6.273182532 23.01650236 1.13891994 1.357088927 0.191696262 0.214261387 450.0428667 882076.4381 0.075992939 0.067669891 5.33E-07 6.273182532 0.218168987 ASDVHEVR ddPTM_HeLa_A485_30min_R1 5 ASDVHEVR 8 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;; ;;;; 109.11 0.0042633 937884000 1756619 2188955 1890810 1751074 1728248 1865922 1989003 2356359 2202919 2697129 FALSE FALSE TRUE 2147372.836 2444934.246 2590299.302 1846730.739 1556177.561 1963618.791 1564036.26 1778458.261 2645024.637 2024784.377 1.060543957 1.207503512 1.279296369 0.912062914 0.768564583 0.969791555 0.772445836 0.878344519 1.306324104 1 20.94933685 -5.273014876 24.20697555 0.925489442 1.184953501 0.339370301 0.150959281 493.5499109 1032123.791 0.042915541 0.064326684 5.33E-06 5.273014876 0.259464059 ASDVHEVR ddPTM_HeLa_A486_30min_R1 3 ASDVHEVR 8 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;; ;; 121.05 0.0025285 472990000 1038340 938900 1428940 251117 1462700 1652100 1189780 925950 1617750 1042460 FALSE FALSE TRUE 965557.728 864498.1446 1982263.836 584613.0668 1279234.527 1448280.699 892084.4598 715131.3983 1757977.873 781421.2307 1.235643069 1.106315148 2.536741719 0.748140751 1.637061391 1.853393077 1.141617894 0.915167608 2.249718594 1 19.57574093 -10.29409032 4.371583157 0.999608838 1.476759863 0.066138493 0.551591724 363483021.9 909.9156641 1431184.652 0.127612087 5.08E-11 10.29409032 0.477151025 ASEAAS(ph)PLPDSPGDK ddPTM_HeLa_A486_30min_R1 2 ASEAASPLPDSPGDK 15 0 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 ASEAAS(1)PLPDSPGDK;ASEAAS(1)PLPDSPGDK ; 273.39 6.64E-55 0 569760 826720 516410 304120 695060 858100 988600 912460 668340 769450 TRUE FALSE FALSE 529822.7662 761207.6963 716377.7819 708006.7294 607879.0936 752236.3465 741241.8237 704712.7769 726272.2493 576774.7117 0.918595693 1.319766073 1.2420409 1.227527343 1.05392813 1.304211733 1.285149658 1.221816357 1.259195722 1 19.13764839 -4.24937727 24.372987 1.221111932 0.918595429 0.436747931 0.099754709 1200.375746 2425446.593 0.023738406 0.380483561 5.63E-05 4.24937727 -0.302516503 ASEAASPLPDS(ph)PGDKLVIVK ddPTM_HeLa_A485_30min_R1 1 ASEAASPLPDSPGDKLVIVK 20 1 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 ASEAASPLPDS(1)PGDKLVIVK 245.09 1.07E-46 389840000 622940 481710 323200 920340 727870 655650 1069600 1100300 508180 1223400 TRUE FALSE FALSE 761510.8539 538041.7942 442765.1295 970615.8438 655400.7071 689978.8202 841071.2222 830449.6998 610167.0647 918428.895 0.829145139 0.58582847 0.482089721 1.056821981 0.713610722 0.751259922 0.915771734 0.904206852 0.664359612 1 19.80880851 -5.250721139 24.99198776 0.845955909 0.62770186 0.346692585 0.141229252 837.2338797 1952195.365 0.037716573 0.064495354 5.61E-06 5.250721139 -0.218254049 ASEDTT(ph)SGSPPKK ddPTM_HeLa_A485_30min_R1 1 ASEDTTSGSPPKK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDT(0.058)T(0.387)S(0.27)GS(0.285)PPKK 69.602 0.014754 64625000 145090 91424 68027 239880 150380 132210 235960 196010 108390 326310 TRUE FALSE FALSE 177364.7699 102115.2415 93193.01814 252984.037 135407.6392 139132.3112 185545.2184 147938.2402 130142.8788 244966.9223 0.724035589 0.416853184 0.380431028 1.032727336 0.55275887 0.567963666 0.757429683 0.603911086 0.531267151 1 17.90222743 -11.12848045 2.308021308 1.756113272 0.618064928 0.294211462 0.177218081 32811345.86 8456319.673 129949810.4 0.045002372 7.44E-12 11.12848045 -1.138048344 ASEDTTS(ph)GSPPKK ddPTM_HeLa_A485_30min_R1 4 ASEDTTSGSPPKK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDT(0.001)T(0.258)S(0.71)GS(0.031)PPKK;ASEDT(0.041)T(0.087)S(0.529)GS(0.343)PPKK;ASEDTT(0.006)S(0.501)GS(0.493)PPKK;ASEDTT(0.002)S(0.499)GS(0.499)PPKK ;;; 198.23 5.86E-21 3243471000 1197720 845190 581333 2133230 1248839 1119235 2057030 1795220 957935 2889200 TRUE FALSE FALSE 1464148.682 944027.6183 796392.268 2249762.953 1124500.204 1177836.414 1617528.736 1354939.48 1150183.768 2168975.612 0.675041561 0.435241232 0.367174377 1.037246773 0.518447602 0.543038109 0.745756996 0.624690971 0.530288935 1 21.0485824 -11.40367562 2.161019687 3.915551075 0.6088934 0.305089416 0.177235044 11584161.43 1026390.209 165311593.3 0.047277203 3.95E-12 11.40367562 -3.306657675 ASEDTTS(ph)GSPPKK ddPTM_HeLa_A486_30min_R1 1 ASEDTTSGSPPKK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDT(0.001)T(0.036)S(0.482)GS(0.482)PPKK 141.46 3.12E-07 104380000 90475 83995 38136 65598 79204 97605 144060 129380 61596 166850 TRUE FALSE FALSE 84133.16971 77338.9303 52903.28052 152715.4591 69269.49577 85563.48747 108014.6643 99922.99835 66935.19087 125069.674 0.672690406 0.61836677 0.422990473 1.221043074 0.553847256 0.684126573 0.863635931 0.798938665 0.53518322 1 16.93237249 -14 0.258504561 2.764642547 0.692001604 0.138597059 0.211077322 408.5476616 4.025967552 384.1802238 0.283379366 1.00E-14 14 -2.072640942 ASEDTTSGS(ph)PPK ddPTM_HeLa_A485_30min_R1 3 ASEDTTSGSPPK 12 0 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDTT(0.001)S(0.002)GS(0.997)PPK;ASEDTTS(0.004)GS(0.995)PPK;ASEDTTS(0.001)GS(0.999)PPK ;; 197.25 5.92E-17 2684770000 1961910 1951560 1369410 3184850 2510950 1924990 3183770 3086940 1680180 4269950 TRUE FALSE FALSE 2398330.111 2179777.966 1876011.745 3358830.291 2260951.002 2025779.5 2503531.53 2329863.125 2017376.714 3205530.048 0.748185191 0.68000547 0.58524229 1.04782368 0.705328282 0.631963972 0.781003919 0.726826169 0.629342631 1 21.6121315 -10.15962252 4.651178441 1.000026792 0.7283929 0.313479151 0.121520798 165461824.6 3.019015252 59382.89081 0.029429704 6.92E-11 10.15962252 -0.271633892 ASEDTTSGS(ph)PPK ddPTM_HeLa_A486_30min_R1 4 ASEDTTSGSPPK 12 0 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDTTS(0.002)GS(0.998)PPK;ASEDT(0.001)T(0.002)S(0.007)GS(0.99)PPK;ASEDT(0.015)T(0.012)S(0.023)GS(0.95)PPK;ASEDT(0.001)TS(0.003)GS(0.997)PPK ;;; 209.19 2.03E-17 2554760000 2628940 2613760 1406957 1766940 2357060 3001440 3997010 3536060 2091710 4966380 TRUE FALSE FALSE 2444664.882 2406636.138 1951768.43 4113525.616 2061415.556 2631152.849 2996915.822 2730976.33 2273021.107 3722766.122 0.656679684 0.6464645 0.524279089 1.104964825 0.553732222 0.706773609 0.805023932 0.73358794 0.610573169 1 21.82794355 -11.40826939 2.282581213 3.489175937 0.708854794 0.245180263 0.155297457 6695184.159 552789.212 86877300.89 0.038119555 3.91E-12 11.40826939 -2.780321143 ASEDTTSGS(ph)PPKK ddPTM_HeLa_A485_30min_R1 4 ASEDTTSGSPPKK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDTTSGS(1)PPKK;ASEDT(0.02)T(0.017)S(0.154)GS(0.808)PPKK;ASEDTT(0.001)S(0.047)GS(0.952)PPKK;ASEDT(0.005)T(0.004)S(0.023)GS(0.968)PPKK ;;; 148.52 4.22E-08 21077300000 4641520 3086120 2143420 8626860 4800960 4537100 7677890 6708490 3561350 11458360 TRUE FALSE FALSE 5674010.111 3447014.888 2936360.253 9098123.517 4322959.565 4774655.54 6037446.079 5063222.309 4276080.278 8602001.727 0.659615086 0.400722413 0.341357785 1.057675156 0.502552743 0.555063309 0.701865248 0.588609776 0.497102932 1 23.03624099 -10.58496536 2.962060012 1.024117144 0.590045287 0.3016778 0.187411048 62998277.39 69188920.08 11982906.34 0.047741131 2.60E-11 10.58496536 -0.434071857 ASEDTTSGS(ph)PPKK ddPTM_HeLa_A486_30min_R1 7 ASEDTTSGSPPKK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDT(0.003)T(0.018)S(0.028)GS(0.95)PPKK;ASEDT(0.001)T(0.004)S(0.171)GS(0.824)PPKK;ASEDT(0.001)T(0.003)S(0.143)GS(0.853)PPKK;ASEDTT(0.015)S(0.016)GS(0.969)PPKK;ASEDT(0.004)T(0.115)S(0.097)GS(0.784)PPKK;ASEDT(0.001)T(0.003)S(0.1)GS(0.896)PPKK;ASEDTT(0.001)S(0.008)GS(0.99)PPKK ;;;;;; 136.83 2.35E-05 22647110000 5081890 4736300 1939493 3559440 4096180 6003700 7987100 7048070 3731110 9473890 TRUE FALSE FALSE 4725675.754 4360978.339 2690516.631 8286556.204 3582398.909 5263024.535 5988643.101 5443378.319 4054525.619 7101566.279 0.665441336 0.614086832 0.378862426 1.166863179 0.504451943 0.741107571 0.843284828 0.76650391 0.570933997 1 22.75970582 -14 0.127609795 1.91245571 0.578852918 0.16360303 0.203449109 277.8742333 2.248784767 66.2998299 1.613819559 1.00E-14 14 -1.333602792 ASEDTTSGS(ph)PPKKSSAGPK ddPTM_HeLa_A485_30min_R1 3 ASEDTTSGSPPKKSSAGPK 19 2 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDT(0.067)T(0.067)S(0.236)GS(0.63)PPKKSSAGPK;ASEDT(0.001)T(0.002)S(0.01)GS(0.987)PPKKSSAGPK;ASEDT(0.024)T(0.024)S(0.052)GS(0.88)PPKKS(0.01)S(0.01)AGPK ;; 130.3 1.73E-06 1657470000 525350 1262240 296982 272138 897360 2468830 3653130 10452900 530780 496450 TRUE FALSE FALSE 642212.2951 1409847.988 406848.0003 287004.2099 808015.6876 2598094.121 2872608.932 7889309.885 637302.6774 372694.1515 1.72316172 3.782855144 1.091640421 0.770079725 2.168039623 6.971115889 7.707684493 21.16832221 1.709988404 1 18.50763265 -6.423642111 2.453868188 9.509238396 1.847059265 0.212545621 5.268553376 0.367547892 4.346260174 2.06108864 1.716952904 3.77E-07 6.423642111 -7.662179131 ASEEHLK(ac)QHYIDLK ddPTM_HeLa_A486_30min_R1 1 ASEEHLKQHYIDLK 14 1 Q32Q12;P22392-2;P22392;J3KPD9;F6XY72 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 1 ASEEHLK(1)QHYIDLK 65.805 0.022019 4727000 7433.3 10371 8887.1 3461.5 13691 10523 11056 11139 8335.5 8979 FALSE TRUE FALSE 6912.264056 9549.164189 12328.42312 8058.546935 11973.74712 9224.77925 8289.671862 8602.892863 9058.027851 6730.599957 1.026990774 1.418768646 1.831697502 1.197299942 1.779001455 1.3705731 1.231639366 1.278176228 1.345797984 1 12.7165194 -8.122068598 0.615385817 1.005209451 1.449229034 0.214348082 0.232918883 1.477365663 1.269080191 0.248160431 0.102162694 7.55E-09 8.122068598 0.444019583 ASEENLLSSSSVPSADRDSS(ph)PTTNSK ddPTM_HeLa_A485_30min_R1 2 ASEENLLSSSSVPSADRDSSPTTNSK 26 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 ASEENLLSSSSVPSADRDS(0.004)S(0.771)PT(0.217)T(0.008)NSK;ASEENLLSSSSVPSADRDS(0.224)S(0.77)PT(0.005)T(0.001)NSK ; 333.22 7.43E-124 3063900000 1219400 1194780 1103780 1527930 1806880 1531180 1946800 1799910 1308350 2225200 TRUE FALSE FALSE 1490651.323 1334499.128 1512114.154 1611396.947 1626980.683 1611350.217 1530850.276 1358479.25 1570923.844 1670498.592 0.892339168 0.798862767 0.905187326 0.964620356 0.97394915 0.964592383 0.916403213 0.813217836 0.940392199 1 20.67184734 -4.954388357 7.297295521 0.93300541 0.8463405 0.331056457 0.052170407 0.26493084 34.19631735 0.014460113 0.030239665 1.11E-05 4.954388357 -0.08666491 ASEENLLSSSSVPSADRDSS(ph)PTTNSK ddPTM_HeLa_A486_30min_R1 2 ASEENLLSSSSVPSADRDSSPTTNSK 26 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 ASEENLLSSSSVPSADRDS(0.007)S(0.967)PT(0.022)T(0.004)NSK;ASEENLLSSSSVPSADRDS(0.027)S(0.76)PT(0.185)T(0.027)NSK ; 301.79 1.10E-90 3115900000 1099360 1314080 851840 466740 1398000 1254980 1557800 1502350 1021850 1557370 TRUE FALSE FALSE 1022300.541 1209947.515 1181695.261 1086594.308 1222649.804 1100153.327 1168021.963 1160297.701 1110424.781 1167394.415 0.875711352 1.036451348 1.012250226 0.93078594 1.047332237 0.942400711 1.000537563 0.993920894 0.951199326 1 20.15486064 -4.246009297 24.49262221 0.989745696 0.875711241 0.468686687 0.036669816 1894.362527 3006915.247 0.008643353 0.197291186 5.68E-05 4.246009297 -0.114034455 ASEIDQVVPAAQSS(ph)PINCEKR ddPTM_HeLa_A485_30min_R1 1 ASEIDQVVPAAQSSPINCEKR 21 1 O94782;C9JWX4;C9JC88 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ASEIDQVVPAAQS(0.178)S(0.822)PINCEKR 87.952 0.00074866 781630000 96848 140340 127310 96062 178040 159930 218770 253390 124160 149120 TRUE FALSE FALSE 118391.5035 156751.5422 174407.2668 101309.6238 160313.7125 168303.6875 172028.0023 191245.7052 149077.7731 111947.1284 1.057566239 1.400228345 1.557943195 0.904977424 1.432048457 1.503421213 1.536689729 1.708357401 1.33168019 1 16.772458 -5.972079895 24.99348053 1.467831511 1.253583925 0.108331873 0.239865143 406.2682984 363680.9579 0.072589977 0.08230784 1.07E-06 5.972079895 -0.214247585 ASEIDQVVPAAQSS(ph)PINCEKR ddPTM_HeLa_A486_30min_R1 2 ASEIDQVVPAAQSSPINCEKR 21 1 O94782;C9JWX4;C9JC88 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ASEIDQVVPAAQS(0.207)S(0.793)PINCEKR;ASEIDQVVPAAQS(0.204)S(0.796)PINCEKR ; 157.31 2.10E-10 833790000 482490 468770 381030 224933 631780 422890 573010 680730 317880 636530 TRUE FALSE FALSE 448669.9426 431622.958 528575.0203 523655.3915 552536.2613 370718.1314 429636.8373 525742.6392 345434.0943 477138.7449 0.940334331 0.90460681 1.107801506 1.097490818 1.158020109 0.776960864 0.900444246 1.101865327 0.72396991 1 18.86404932 -6.258095268 24.99043812 0.907001916 1.040814431 0.251699325 0.121309614 478.4113888 3575161.68 0.041806616 0.040171851 5.52E-07 6.258095268 0.133812515 ASEKPVS(ph)PK ddPTM_HeLa_A485_30min_R1 4 ASEKPVSPK 9 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 ASEKPVS(1)PK;ASEKPVS(1)PK;ASEKPVS(1)PK;ASEKPVS(1)PK ;;; 89.43 0.0017755 4650370000 3798610 3236460 2638560 7692900 4255670 3751880 7254900 6488190 2984060 10201900 TRUE FALSE FALSE 4643597.689 3614935.844 3614673.144 8113143.648 3831960.552 3948322.635 5704831.348 4896951.229 3582933.471 7658754.082 0.606312416 0.472000511 0.471966211 1.059329437 0.500337328 0.515530672 0.744877207 0.639392671 0.467821976 1 22.86867828 -10.53420402 3.112324768 1.013699487 0.612827627 0.314335841 0.173312068 94445976.68 114270167 10985791.27 0.042885163 2.92E-11 10.53420402 -0.40087186 ASEKPVS(ph)PK ddPTM_HeLa_A486_30min_R1 6 ASEKPVSPK 9 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 ASEKPVS(1)PK;ASEKPVS(1)PK;ASEKPVS(1)PK;ASEKPVS(1)PK;ASEKPVS(1)PK;ASEKPVS(1)PK ;;;;; 121.66 0.00018591 5320570000 6490820 5692020 3643672 5385860 5269800 8124760 11450790 9412370 4893510 15146440 TRUE FALSE FALSE 6035847.037 5240963.605 5054599.379 12538554.27 4608812.545 7122409.718 8585681.228 7269378.822 5317683.387 11353672.84 0.531620659 0.461609532 0.445195088 1.104361069 0.405931421 0.627322085 0.75620298 0.640266716 0.468366798 1 23.43665574 -11.44153387 2.276661976 4.941028398 0.610691708 0.267702775 0.195980676 10054616.98 1302089.285 202792549.5 0.048832696 3.62E-12 11.44153387 -4.33033669 ASELS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 ASELSPGR 8 0 Q5T196;Q8NFF5-3;Q8NFF5-2;Q8NFF5 Q5T196 FLAD1 FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region 1 0 AS(0.002)ELS(0.998)PGR 78.098 0.010625 422770000 592930 727000 747300 123780 801790 596680 516560 603990 600230 426800 TRUE FALSE FALSE 551368.6689 669389.8723 1036674.573 288166.0955 701222.0218 523067.6882 387311.2244 466474.662 652258.4197 319926.502 1.723422928 2.092323919 3.24035229 0.900725928 2.191822239 1.634962046 1.210625634 1.45806821 2.03877583 1 18.28738098 -5.274352846 24.9888267 1.533350777 2.326062216 0.359651582 0.524175075 869.3469924 1682270.216 0.145706465 0.217628281 5.32E-06 5.274352846 0.792711439 ASEPLLS(ph)PPPFGESR ddPTM_HeLa_A485_30min_R1 3 ASEPLLSPPPFGESR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR ;; 208.39 1.29E-25 495879000 170717 202733 195334 135833 220511 180723 198440 188454 163036 176442 TRUE FALSE FALSE 208692.4077 226440.8608 267596.1751 143253.2128 198556.1506 190185.3768 156041.6729 142235.361 195755.8297 132458.2566 1.575533403 1.709526206 2.020230237 1.081497043 1.49900924 1.43581368 1.17804414 1.073812722 1.477868083 1 17.01517825 -5.266493973 24.99996408 1.267700602 1.762539577 0.5958001 0.195470858 295.1333589 1459727.104 0.05469413 0.084023615 5.41E-06 5.266493973 0.494838976 ASEPLLS(ph)PPPFGESR ddPTM_HeLa_A486_30min_R1 2 ASEPLLSPPPFGESR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR ; 199.58 2.91E-25 334930000 141981 154479 126203 40540 186246 123412 132313 139104 112132 137345 TRUE FALSE FALSE 132028.8651 142237.5214 175072.1814 94379.16878 162885.29 108186.6822 99206.88794 107433.0558 121851.692 102952.918 1.282419844 1.381578338 1.70050723 0.916721649 1.582133786 1.050836482 0.963614144 1.043516375 1.183567153 1 16.6516252 -6.296390864 21.09427551 1.045732624 1.366049269 0.399161709 0.198884199 98.8479865 59656.70268 0.067915431 0.059904339 5.05E-07 6.296390864 0.320316645 ASES(ph)PARGPSGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ASESPARGPSGSPR 14 1 O43237;O43237-2;J3KRZ2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 2 0 AS(0.108)ES(0.892)PARGPS(0.03)GS(0.97)PR;AS(0.002)ES(0.998)PARGPS(0.246)GS(0.754)PR ; 200.27 3.53E-21 665590000 456360 697700 698570 458300 1005120 752280 825250 1084280 633790 668230 TRUE FALSE FALSE 557875.7076 779289.9458 957000.1129 483335.7685 905046.7236 791668.2176 648928.5958 818358.6299 760985.8395 501652.5589 1.112075873 1.553445571 1.907695069 0.963487099 1.804130583 1.578120561 1.293581752 1.631325537 1.516957954 1 18.93632898 -10.55246193 6.858761119 0.999578651 1.494536652 0.215727997 0.276566714 0.00169973 0.000110908 0.255432547 0.061901505 2.80E-11 10.55246193 0.494958001 ASES(ph)PARGPSGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ASESPARGPSGSPR 14 1 O43237;O43237-2;J3KRZ2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 2 0 AS(0.028)ES(0.972)PARGPS(0.143)GS(0.857)PR;AS(0.423)ES(0.577)PARGPS(0.008)GS(0.992)PR ; 176.01 4.69E-12 610210000 700840 788020 774910 298580 1160940 729820 877700 969300 604310 835960 TRUE FALSE FALSE 651714.7351 725574.4253 1074975.905 695109.3294 1015324.08 639782.2287 658090.1766 748611.5497 656692.0774 626630.1748 1.040030885 1.157898956 1.715486978 1.10928161 1.620292352 1.020988542 1.050205054 1.194662466 1.047973915 1 19.25725472 -6.321422184 24.9998786 1.074147173 1.328426152 0.2956299 0.204788608 343.7001158 143247.627 0.071297862 0.062878817 4.77E-07 6.321422184 0.254278979 ASES(ph)PARGPSGSPR ddPTM_HeLa_A485_30min_R1 4 ASESPARGPSGSPR 14 1 O43237;O43237-2;J3KRZ2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 ASES(0.981)PARGPS(0.017)GS(0.002)PR;AS(0.004)ES(0.996)PARGPSGSPR;ASES(1)PARGPSGSPR;AS(0.016)ES(0.984)PARGPSGSPR ;;; 157.37 1.59E-08 3458550000 940080 1794910 1705920 818950 2260100 1901960 2069030 3036770 1530290 1245670 TRUE FALSE FALSE 1149197.553 2004809.111 2337010.797 863687.1648 2035076.508 2001543.685 1626964.838 2291997.396 1837405.166 935147.3939 1.228894568 2.143842911 2.499082832 0.923583994 2.176209357 2.140351027 1.739795083 2.450947745 1.964829479 1 19.83483425 ASES(ph)PARGPSGSPR ddPTM_HeLa_A486_30min_R1 4 ASESPARGPSGSPR 14 1 O43237;O43237-2;J3KRZ2 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 AS(0.065)ES(0.935)PARGPSGSPR;AS(0.015)ES(0.985)PARGPSGSPR;ASES(1)PARGPSGSPR;AS(0.008)ES(0.992)PARGPSGSPR ;;; 187.75 6.99E-18 3294240000 2424750 2498270 2897220 826520 4156990 2084710 2573660 3150910 2099190 2331800 TRUE FALSE FALSE 2254787.546 2300297.987 4019101.174 1924180.33 3635581.552 1827519.676 1929703.047 2433516.577 2281149.479 1747902.103 1.289996472 1.316033652 2.299385743 1.100851316 2.079968636 1.045550362 1.104010942 1.392249928 1.305078514 1 20.73719295 -6.297436335 24.99854804 1.189808101 1.609721292 0.283294322 0.355339764 845.9630024 587487.2793 0.121483024 0.107141519 5.04E-07 6.297436335 0.419913192 ASES(ph)S(ph)SEEKDDYEIFVK ddPTM_HeLa_A485_30min_R1 1 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 2 0 AS(0.102)ES(0.902)S(0.898)S(0.098)EEKDDYEIFVK 127.05 1.86E-05 52295000 118270 99585 59513 251140 137330 123720 218710 190470 98219 337010 TRUE FALSE FALSE 144578.7535 111230.5995 81529.33524 264859.1423 123656.943 130197.7879 171980.8218 143756.9339 117930.6524 252999.6092 0.571458406 0.439647317 0.322250835 1.046875697 0.488763376 0.514616557 0.679767144 0.568210102 0.466129781 1 17.94877563 -11.23119102 2.254995409 2.431055401 0.569214369 0.333338276 0.183914831 14861858.86 2461513.468 108563301.3 0.048135579 5.87E-12 11.23119102 -1.861841032 ASES(ph)S(ph)SEEKDDYEIFVK ddPTM_HeLa_A486_30min_R1 2 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 2 0 AS(0.184)ES(0.804)S(0.499)S(0.499)EEKDDY(0.014)EIFVK;AS(0.129)ES(0.811)S(0.567)S(0.493)EEKDDYEIFVK ; 88.036 0.0011179 169169000 340680 315120 133282 241333 271854 420270 562340 496270 256925 666420 TRUE FALSE FALSE 316800.0913 290148.7436 184892.3598 561835.4203 237755.5364 368421.3604 421636.5842 383280.1545 279195.4659 499544.0943 0.634178434 0.580827092 0.370122201 1.124696351 0.475945045 0.737515195 0.844042776 0.767259905 0.558900544 1 18.9302525 -14 0.074493599 1.956706145 0.35700352 0.194631325 0.199388871 478.2734791 2.541535841 78.96594073 8.620911009 1.00E-14 14 -1.599702625 ASES(ph)SSEEKDDYEIFVK ddPTM_HeLa_A485_30min_R1 1 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 AS(0.004)ES(0.982)S(0.012)S(0.002)EEKDDYEIFVK 175.77 6.25E-13 644890000 138140 91253 63523 212270 147040 141580 205470 183780 93968 301650 TRUE FALSE FALSE 168868.7664 101924.2446 87022.80111 223865.7726 132400.1813 148992.9099 161569.656 138707.6668 112826.5157 226454.2065 0.745708234 0.450087663 0.384284322 0.988569725 0.584666469 0.657938363 0.713476064 0.612519719 0.498231044 1 17.78885981 -11.11425456 2.469779406 1.715635554 0.626411388 0.324315543 0.161878351 25042971.41 6366189.544 100726771.7 0.042710518 7.69E-12 11.11425456 -1.089224167 ASES(ph)SSEEKDDYEIFVK ddPTM_HeLa_A486_30min_R1 1 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 AS(0.002)ES(0.98)S(0.017)S(0.001)EEKDDYEIFVK 190.63 2.80E-18 929240000 823480 794800 357630 546920 787590 1031700 1332100 1189000 635940 1579000 TRUE FALSE FALSE 765758.3045 731817.1534 496113.9137 1273257.4 688803.1182 904419.3436 998794.4905 918290.6557 691063.7912 1183608.122 0.646969457 0.618293453 0.41915386 1.075742364 0.581952004 0.764120596 0.843855725 0.77584011 0.583861988 1 20.17476007 -14 0.044481963 2.103207684 0.092575911 0.219629198 0.169446496 1099.661156 3.630256159 157.5205457 41.38860117 1.00E-14 14 -2.010631773 ASESS(ph)SEEKDDYEIFVK ddPTM_HeLa_A486_30min_R1 1 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 ASES(0.346)S(0.513)S(0.141)EEKDDYEIFVK 213.13 3.72E-26 758320000 424370 411200 144470 309760 356370 474930 699460 600520 308060 801280 TRUE FALSE FALSE 394623.8544 378615.0144 200412.653 721136.9344 311670.7516 416337.9653 524447.7099 463794.7053 334762.8888 600634.2725 0.657011883 0.630358659 0.333668361 1.200625684 0.51890271 0.693163851 0.873156484 0.772174893 0.557348963 1 19.19612727 -14 0.117261485 1.884132241 0.557096197 0.144515162 0.219719341 321.7311894 2.459350315 69.29014372 2.248767976 1.00E-14 14 -1.327036044 ASESSKPWPDATYGTGS(ph)ASR ddPTM_HeLa_A485_30min_R1 5 ASESSKPWPDATYGTGSASR 20 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ASESSKPWPDATYGTGS(0.981)AS(0.018)R;ASESSKPWPDATYGT(0.02)GS(0.946)AS(0.034)R;ASESSKPWPDATYGTGS(0.997)AS(0.002)R;ASESSKPWPDATYGT(0.012)GS(0.916)AS(0.072)R;ASESSKPWPDAT(0.01)YGT(0.184)GS(0.671)AS(0.135)R ;;;; 257.61 5.99E-59 3141500000 2326410 2476411 2160519 2459234 3429770 2763130 3389240 3602820 2527963 3390110 TRUE FALSE FALSE 2843911.878 2766005.725 2959784.885 2593575.726 3088290.056 2907803.214 2665101.186 2719222.746 3035301.986 2545017.967 1.117442751 1.086831512 1.162972098 1.019079535 1.213464933 1.142547224 1.047183643 1.068449332 1.19264462 1 21.27924441 -10.30340606 3.817345813 0.999755919 1.114481624 0.255686622 0.059639751 4837565.293 13057116.98 5414.748974 0.014058635 4.97E-11 10.30340606 0.114725705 ASESSKPWPDATYGTGS(ph)ASR ddPTM_HeLa_A486_30min_R1 2 ASESSKPWPDATYGTGSASR 20 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ASESSKPWPDATYGTGS(0.916)AS(0.084)R;ASESSKPWPDATYGTGS(0.999)AS(0.001)R ; 297.5 3.36E-87 2466000000 2670900 2761000 1937530 887320 3243400 2827300 3061500 3008400 2209400 2892300 TRUE FALSE FALSE 2483683.703 2542208.305 2687793.505 2065725.803 2836582.528 2478496.472 2295480.319 2323452.993 2400912.571 2168049.254 1.145584538 1.172578667 1.239728987 0.952803908 1.308357051 1.143191958 1.058776831 1.071679063 1.107406839 1 21.0479661 -7.609892643 0.514226342 1.003108929 1.167308019 0.228422322 0.088872851 1.314177164 0.865684639 0.093612888 0.053059245 2.46E-08 7.609892643 0.16419909 ASET(ph)PPPVAQPKPEAPHPGLETTLQER ddPTM_HeLa_A485_30min_R1 3 ASETPPPVAQPKPEAPHPGLETTLQER 27 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 AS(0.032)ET(0.968)PPPVAQPKPEAPHPGLETTLQER;AS(0.185)ET(0.815)PPPVAQPKPEAPHPGLETTLQER;AS(0.169)ET(0.831)PPPVAQPKPEAPHPGLETTLQER ;; 158.64 5.70E-10 1710510000 337839 373119 325397 440756 437293 392171 530073 561433 355595 599717 TRUE FALSE FALSE 412990.12 416752.0213 445774.8912 464833.3842 393754.5735 412704.4671 416818.5733 423740.6765 426959.6548 450218.5889 0.917310236 0.925665958 0.990129911 1.032461555 0.874585331 0.91667576 0.925813779 0.941188762 0.948338575 1 18.7802661 -8.29306517 2.879299889 0.999996491 0.941297193 0.157564264 0.041002914 5.012772391 46.59781296 0.042327161 0.011314234 5.09E-09 8.29306517 -0.058699298 ASET(ph)PPPVAQPKPEAPHPGLETTLQER ddPTM_HeLa_A486_30min_R1 2 ASETPPPVAQPKPEAPHPGLETTLQER 27 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 AS(0.169)ET(0.831)PPPVAQPKPEAPHPGLETTLQER;AS(0.002)ET(0.998)PPPVAQPKPEAPHPGLETTLQER ; 128.12 8.29E-06 2047050000 418677 406643 276652 226012 414735 435767 487940 507126 348558 532260 TRUE FALSE FALSE 389329.9044 374419.1277 383779.0634 526167.358 362715.069 382006.4981 365852.2511 391664.4803 378771.2881 398978.6316 0.975816431 0.938444062 0.961903804 1.318785811 0.909109011 0.957461046 0.916972043 0.981667812 0.949352316 1 18.60595196 ASFDHS(ph)PDSLPLR ddPTM_HeLa_A486_30min_R1 2 ASFDHSPDSLPLR 13 0 H0Y6H0;Q8NB78;Q8NB78-2 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 0 ASFDHS(1)PDSLPLR;ASFDHS(1)PDSLPLR ; 145.52 6.64E-08 313190000 462360 561730 606860 47302 706660 410100 453290 468000 485770 281170 TRUE FALSE FALSE 429950.9516 517216.469 841852.4443 110121.4465 618024.1135 359506.0316 339872.0476 361446.6164 527876.9347 210763.2019 2.039971626 2.454016946 3.994304683 0.522488962 2.932315072 1.705734342 1.612577739 1.71494176 2.504597245 1 17.68526348 -5.259204235 24.99999837 1.789313954 2.791889565 0.292673745 0.788355145 275.5986521 3082540.403 0.209596432 0.341813656 5.51E-06 5.259204235 1.002575611 ASFFAASDENHRPLS(ph)AAS(ph)NSDQLEDQALAQMKPYSSSK ddPTM_HeLa_A485_30min_R1 1 ASFFAASDENHRPLSAASNSDQLEDQALAQMKPYSSSK 38 2 O43166-2;O43166 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 2 0 AS(0.303)FFAAS(0.364)DENHRPLS(0.463)AAS(0.442)NS(0.429)DQLEDQALAQMKPYSSSK 56.773 0.0091226 80277000 43640 56939 47234 42630 70267 54931 72711 82311 57653 62496 TRUE FALSE FALSE 53347.56744 63597.52075 64707.82217 44958.76896 63270.97076 57807.10222 57175.70086 62124.09819 69223.42828 46916.89735 1.137065118 1.355535518 1.379200796 0.958263898 1.348575339 1.232116902 1.218659035 1.324130573 1.4754477 1 15.51781999 -7.257979647 23.80554034 1.299841849 1.236997781 0 0.16002943 689.7241457 4745890.868 0.076165319 0.041658024 5.52E-08 7.257979647 -0.062844068 ASFFAASDENHRPLS(ph)AAS(ph)NSDQLEDQALAQMKPYSSSK ddPTM_HeLa_A486_30min_R1 1 ASFFAASDENHRPLSAASNSDQLEDQALAQMKPYSSSK 38 2 O43166-2;O43166 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 2 0 AS(0.008)FFAAS(0.012)DENHRPLS(0.978)AAS(0.819)NS(0.183)DQLEDQALAQMKPYSSSK 169.73 6.11E-15 40259000 60860 76773 58654 12438 85008 69408 73298 77139 60702 65454 TRUE FALSE FALSE 56594.02828 70689.22788 81366.39961 28956.29258 74345.50397 60845.14665 54958.06513 59576.13363 65963.69823 49063.89237 1.153476122 1.440758661 1.658376368 0.590175202 1.515279371 1.240120661 1.120132596 1.214256162 1.344444867 1 15.58237407 -14 0.138700362 0.196161362 1.339651599 0.066524876 0.27376891 423.9429743 3.612103503 95.83498414 1.717606753 1.00E-14 14 1.143490236 ASGDPGASGMS(ph)PR ddPTM_HeLa_A485_30min_R1 3 ASGDPGASGMSPR 13 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR ;; 194.59 6.53E-18 8380540000 6634730 9257040 8893460 6833000 10175000 8606340 9573520 10390880 8046470 9123110 TRUE FALSE FALSE 8110602.799 10339570.3 12183520.94 7206269.488 9161941.273 9056954.654 7528059.244 7842500.388 9661322.722 6848886.575 1.184222094 1.509671709 1.778905346 1.05218117 1.337727114 1.322398109 1.099165413 1.145076693 1.410641367 1 22.70743804 -5.278559846 24.99412609 1.208580711 1.492806959 0.354577671 0.18215222 902.8854776 1318118.299 0.051135613 0.076054127 5.27E-06 5.278559846 0.284226249 ASGDPGASGMS(ph)PR ddPTM_HeLa_A486_30min_R1 5 ASGDPGASGMSPR 13 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR;ASGDPGAS(0.029)GMS(0.971)PR;ASGDPGASGMS(1)PR;ASGDPGASGMS(1)PR ;;;; 217.68 2.88E-27 9098430000 10014100 11441630 9848750 3128194 12480610 9855790 11166330 11769950 9506670 10721950 TRUE FALSE FALSE 9312163.303 10534953.57 13662449.76 7282593.722 10915175.52 8639882.836 8372396.129 9090189.321 10330715.81 8037103.932 1.15864662 1.310789764 1.699921996 0.906121631 1.358098092 1.074999516 1.041718037 1.131027967 1.285377904 1 22.93824431 -5.275592155 24.99879245 1.124911391 1.381886528 0.339393426 0.175808008 923.2975137 1630866.813 0.048771757 0.072722931 5.30E-06 5.275592155 0.256975136 ASGGAQS(ph)PLR ddPTM_HeLa_A485_30min_R1 6 ASGGAQSPLR 10 0 H7BZV9;C9JU48;D3YTC9;Q6NXT1 H7BZV9 ANKRD54 Ankyrin repeat domain-containing protein 54 1 0 ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR ;;;;; 165.07 4.51E-07 10843490000 3846560 5046500 4986940 4004580 5819560 4737590 5551880 5954290 4266970 5026060 TRUE FALSE FALSE 4702214.002 5636644.276 6831816.63 4223340.065 5240144.173 4985642.887 4365675.483 4493991.042 5123311.74 3773155.74 1.246228443 1.493880631 1.810637329 1.119312416 1.388796152 1.32134564 1.157035592 1.191043082 1.357832036 1 21.84734022 -5.288002167 24.99530546 1.236013132 1.514612108 0.393886733 0.168266385 768.9889003 723608.7724 0.047176744 0.069997895 5.15E-06 5.288002167 0.278598976 ASGGAQS(ph)PLR ddPTM_HeLa_A486_30min_R1 7 ASGGAQSPLR 10 0 H7BZV9;C9JU48;D3YTC9;Q6NXT1 H7BZV9 ANKRD54 Ankyrin repeat domain-containing protein 54 1 0 ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR;ASGGAQS(1)PLR ;;;;;; 163.93 4.89E-07 8216460000 3932050 4549640 3700460 1286118 4975330 3912360 4352700 4574530 3452350 4053690 TRUE FALSE FALSE 3656433.6 4189109.957 5133377.214 2994147.701 4351277.718 3429692.801 3263608.422 3533009.38 3751602.478 3038619.639 1.203320598 1.378622682 1.689378015 0.985364427 1.431991574 1.128700926 1.074043089 1.162702082 1.234640371 1 21.53498467 -5.905127017 1.111661178 1.126869407 1.383703704 0.251259503 0.178699795 0.706260479 1.859392765 0.080714489 0.103418678 1.24E-06 5.905127017 0.256834297 ASGNYATVISHNPETK ddPTM_HeLa_A485_30min_R1 1 ASGNYATVISHNPETK 16 0 P62917;E9PKZ0;G3V1A1 P62917 RPL8 60S ribosomal protein L8 0 0 157.42 2.71E-10 26099000 16484 20955 19251 23783 27906 21567 25628 34279 22133 71878 FALSE FALSE TRUE 20150.80893 23405.50497 26372.746 25082.20507 25127.58066 22696.21477 20152.36844 25872.0215 26574.89008 53960.13742 0.373438799 0.433755474 0.488744975 0.464828414 0.465669323 0.420610767 0.3734677 0.479465449 0.492491149 1 15.7196064 -8.609215146 1.444605877 1.00013129 0.436994775 0.953157857 0.037219359 0.843082529 1.792564471 0.038148685 0.011073718 2.46E-09 8.609215146 -0.563136515 ASGQAFELILS(ph)PR ddPTM_HeLa_A485_30min_R1 12 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR ;;;;;;;;;;; 271.79 1.89E-48 32592424000 1428384 2087365 2071255 1456424 2346582 1791718 1926498 2149115 1654352 1878991 TRUE FALSE FALSE 1746123.093 2331464.179 2837498.417 1535984.755 2112948.057 1885529.584 1514885.964 1622041.177 1986365.272 1410593.124 1.237864458 1.652825425 2.011564049 1.088892842 1.497914615 1.336692737 1.073935452 1.149900102 1.408177339 1 20.42787048 -5.904326629 1.12291867 1.182631266 1.59191847 0.293518605 0.248507599 0.623209346 1.672077257 0.113919387 0.145717075 1.25E-06 5.904326629 0.409287203 ASGQAFELILS(ph)PR ddPTM_HeLa_A486_30min_R1 11 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR ;;;;;;;;;; 185.74 3.12E-17 30772080000 1189376.1 1263406 1241428.3 387965 1521156.1 1095316 1182098.6 1242908.3 1079087.2 1063464.5 TRUE FALSE FALSE 1106006.977 1163289.107 1722142.584 903202.1267 1330358.518 960187.0483 886325.0273 959925.2126 1172623.347 797166.0672 1.387423553 1.459280764 2.160331022 1.133016273 1.668859943 1.204500653 1.111844901 1.204172195 1.470990043 1 19.60452078 -6.2721505 23.67221471 1.205658726 1.565520147 0.315444712 0.26759012 452.9174889 1000970.491 0.092695034 0.082664766 5.34E-07 6.2721505 0.359861421 ASGQAFELILSPR ddPTM_HeLa_A485_30min_R1 2 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 0 ; ; 166.7 2.29E-06 84140000 42847 60936 68812 47618 73997 62465 67790 69598 57737 66695 FALSE FALSE TRUE 52378.16733 68061.93513 94268.42231 50219.25076 66629.59886 65735.57081 53306.11271 52528.98137 69324.2863 50069.16393 1.046116276 1.359358331 1.882764059 1.00299759 1.330751178 1.312895316 1.064649547 1.049128391 1.384570479 1 15.61163474 -6.201061986 1.106972282 1.13574024 1.374373311 0.117983196 0.244951385 1.065089863 2.727849019 0.129557265 0.123786594 6.29E-07 6.201061986 0.238633071 ASGQAFELILSPR ddPTM_HeLa_A486_30min_R1 1 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 0 118.76 0.0010524 28639000 19701 24147 24249 8822.7 33479 21970 25459 29616 22812 20672 FALSE FALSE TRUE 18320.06164 22233.50378 33638.86221 20539.69147 29279.75164 19259.56477 19088.88892 22873.08331 24789.36253 15495.59665 1.18227533 1.434827215 2.17086589 1.325517948 1.889553033 1.24290566 1.231891185 1.476102136 1.599768185 1 13.91957069 -6.29133045 24.93329759 1.334999661 1.607796158 0.186004477 0.30140529 1301.707895 1085800.723 0.106266475 0.093731197 5.11E-07 6.29133045 0.272796496 ASGS(ph)ENEGDYNPGR ddPTM_HeLa_A485_30min_R1 2 ASGSENEGDYNPGR 14 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 ASGS(1)ENEGDYNPGR;ASGS(1)ENEGDYNPGR ; 301.88 2.79E-58 798610000 276651 296172 308260 331878 404640 284830 344110 358380 347550 466900 TRUE FALSE FALSE 338191.0605 330806.739 422298.2018 350007.6548 364352.6208 299743.2584 270588.0874 270486.7431 417300.0971 350510.4227 0.964853079 0.943785741 1.204809257 0.998565612 1.039491545 0.855162183 0.771982999 0.771693866 1.190549753 1 18.41909782 -6.252403102 23.46772556 0.894490204 1.033426479 0.142224897 0.13182531 475.3433385 1234492.563 0.044260571 0.043585285 5.59E-07 6.252403102 0.138936275 ASGS(ph)ENEGDYNPGR ddPTM_HeLa_A486_30min_R1 2 ASGSENEGDYNPGR 14 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 AS(0.001)GS(0.999)ENEGDYNPGR;ASGS(1)ENEGDYNPGR ; 249.36 6.95E-36 1148760000 507920 686020 569450 195069 625190 639310 660510 653970 683800 551510 TRUE FALSE FALSE 472317.4309 631657.2768 789956.2904 454130.4902 546772.8405 560438.4322 495243.4118 505075.3071 743072.3346 413408.3063 1.142496229 1.527925944 1.910837974 1.098503546 1.322597617 1.355653536 1.197952253 1.221734782 1.797429619 1 18.65720785 -5.300210457 24.99923988 1.294981386 1.52717162 0.150328925 0.26314846 1039.118567 670012.03 0.073368186 0.108825065 5.01E-06 5.300210457 0.232190234 ASGSLSPPILAPLS(ph)PGAEISPHDLSLESCR ddPTM_HeLa_A486_30min_R1 1 ASGSLSPPILAPLSPGAEISPHDLSLESCR 30 0 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 0 ASGSLSPPILAPLS(1)PGAEISPHDLSLESCR 139.16 4.12E-07 52807000 50128 59179 50156 7635.3 67859 52691 53101 60095 53969 42977 TRUE FALSE FALSE 46614.28606 54489.44051 69577.74642 17775.36427 59347.49146 46190.52014 39814.56815 46412.68036 58647.07637 32215.27947 1.446962026 1.691416043 2.159774727 0.551768122 1.842215633 1.433807836 1.23589082 1.44070395 1.820473929 1 14.97545749 -11.10062138 2.5279124 0.08997865 1.506606363 0.124279762 0.408672625 22232664.48 7309587.953 116332604.3 0.101692678 7.93E-12 11.10062138 1.416627713 ASHDPLVPNS(ph)SPLPTNGISGSPESFASSLDGSGHAGPEGSR ddPTM_HeLa_A485_30min_R1 2 ASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSR 41 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 ASHDPLVPNS(0.5)S(0.5)PLPTNGISGSPESFASSLDGSGHAGPEGSR;AS(0.003)HDPLVPNS(0.497)S(0.497)PLPT(0.003)NGISGSPESFASSLDGSGHAGPEGSR ; 105.61 1.48E-06 183754000 37099 59177 62350 19506 67631 43997 56536 63918 50181 45589 TRUE FALSE FALSE 45351.54456 66097.23538 85415.8596 20571.56339 60897.42017 46300.61489 44456.62174 48242.01028 60251.86641 34224.5013 1.325119223 1.931284105 2.495751767 0.601077082 1.779351571 1.35284995 1.298970622 1.409575259 1.760489244 1 15.0627419 -5.250420778 24.99574294 1.351987004 1.918774848 0.303457149 0.415799151 957.725187 2172599.788 0.110270292 0.188646256 5.62E-06 5.250420778 0.566787843 ASHDPLVPNS(ph)SPLPTNGISGSPESFASSLDGSGHAGPEGSR ddPTM_HeLa_A486_30min_R1 1 ASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSR 41 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 ASHDPLVPNS(0.495)S(0.495)PLPT(0.003)NGIS(0.001)GS(0.001)PESFASSLDGS(0.001)GHAGPEGS(0.001)R 53.49 0.010505 105610000 19524 24946 25621 2151.5 31352 15949 27808 23468 25082 12903 TRUE FALSE FALSE 18155.46842 22969.18811 35542.13735 5008.800731 27419.53981 13981.37454 20850.14428 18124.8487 27256.12796 9672.004816 1.877115321 2.374811484 3.674743554 0.517865823 2.834938602 1.445550825 2.15572104 1.873949512 2.818043257 1 13.23959925 -5.245794546 24.99963647 1.885348529 2.615482007 0.181273773 0.801079835 1562.19337 2496301.293 0.206856622 0.356731601 5.68E-06 5.245794546 0.730133478 ASHS(ph)SERPPPR ddPTM_HeLa_A485_30min_R1 1 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 AS(0.06)HS(0.812)S(0.128)ERPPPR 78.401 0.0039772 142630000 31171 44958 48123 57969 58659 56941 47516 67445 43690 57282 TRUE FALSE FALSE 38104.88141 50215.44702 65925.70027 61135.69968 52818.704 59922.34271 37363.81843 50904.008 52458.18225 43002.6516 0.886105391 1.167729085 1.533061284 1.42167279 1.228266212 1.393456926 0.868872431 1.183741144 1.219882503 1 15.392138 -6.741255433 24.99975779 1.08343563 1.283709277 0.218408102 0.186961784 407.2328238 504396.9751 0.075434079 0.058357218 1.81E-07 6.741255433 0.200273648 ASHSS(ph)ERPPPR ddPTM_HeLa_A485_30min_R1 1 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 AS(0.39)HS(0.205)S(0.404)ERPPPR 88.224 0.0014784 285000000 213650 700770 212530 200930 358800 905390 736730 3712100 352140 287410 TRUE FALSE FALSE 261175.7054 782718.9556 291153.6911 211906.2971 323076.6122 952794.8204 579321.617 2801701.655 422811.268 215763.9764 1.210469467 3.627662823 1.349408256 0.982120837 1.497361226 4.415912407 2.684978404 12.98502976 1.959600834 1 17.71909449 -6.650194802 2.039836302 5.835384307 1.835880917 0.137201485 3.207554693 0.477902939 4.059507311 1.451943865 1.01364691 2.24E-07 6.650194802 -3.999503391 ASHSS(ph)ERPPPR ddPTM_HeLa_A486_30min_R1 1 ASHSSERPPPR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 ASHS(0.052)S(0.948)ERPPPR 113.34 0.00021152 838400000 62628 47202 64148 34090 69106 71920 70415 57599 53147 81373 TRUE FALSE FALSE 58238.10061 43461.54161 88987.82354 79363.24281 60438.08109 63047.24163 52796.42223 44484.96508 57753.82475 60996.67115 0.954775064 0.712523172 1.458896393 1.301107771 0.990842286 1.033617744 0.865562353 0.729301522 0.946835682 1 15.89644289 -6.589125285 2.327071039 0.861729714 1.095458093 0.177152376 0.199012327 0.522252179 5.735888146 0.094740559 0.070361422 2.58E-07 6.589125285 0.233728379 ASIANSDGPTAGSQT(ph)PPFK ddPTM_HeLa_A485_30min_R1 1 ASIANSDGPTAGSQTPPFK 19 0 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;H9KVA6 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASIANSDGPT(0.001)AGS(0.026)QT(0.972)PPFK 123.83 2.95E-05 123290000 133760 137160 121110 163020 164010 146620 157100 170480 158210 238060 TRUE FALSE FALSE 163514.4505 153199.6689 165913.6288 171925.3698 147680.5885 154296.7965 123534.3016 128669.5127 189961.2958 178716.0232 0.914940069 0.857224026 0.928364597 0.962003108 0.826342182 0.86336297 0.691232378 0.719966293 1.062922577 1 17.44730946 -5.781066139 24.82086098 0.838302025 0.912370297 0.034333652 0.108982338 563.5288161 712660.0262 0.033919708 0.038515157 1.66E-06 5.781066139 0.074068272 ASIANSDGPTAGSQT(ph)PPFK ddPTM_HeLa_A486_30min_R1 2 ASIANSDGPTAGSQTPPFK 19 0 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;H9KVA6 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASIANSDGPT(0.001)AGS(0.154)QT(0.845)PPFK;ASIANSDGPT(0.008)AGS(0.371)QT(0.621)PPFK ; 175.33 2.31E-12 240950000 336860 365980 232483 113189 382660 381820 412560 393610 319560 450440 TRUE FALSE FALSE 313247.8535 336978.4119 322506.6437 263509.7123 334663.2146 334714.9305 309333.1244 303993.5954 347259.7181 337646.8921 0.927738003 0.99802018 0.955159521 0.780429847 0.99116332 0.991316486 0.916143852 0.900329908 1.028470056 1 18.36515575 ASIANSDGPTAGSQT(ph)PPFKR ddPTM_HeLa_A485_30min_R1 2 ASIANSDGPTAGSQTPPFKR 20 1 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;H9KVA6 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASIANSDGPT(0.001)AGS(0.057)QT(0.942)PPFKR;ASIANSDGPT(0.003)AGS(0.052)QT(0.945)PPFKR ; 104.33 3.74E-05 728910000 352670 327970 294680 500260 442200 424010 537640 508920 340160 667760 TRUE FALSE FALSE 431120.2248 366323.2385 403694.3947 527587.9371 398173.0153 446210.508 422768.8219 384106.572 408426.9919 501299.7212 0.860004916 0.730746942 0.80529547 1.052440117 0.794281342 0.890107233 0.843345416 0.766221396 0.814736124 1 18.93531391 -5.023629975 24.99240787 0.870580221 0.788537186 0.14347886 0.089007716 1427.279213 1509573.15 0.024046213 0.041990552 9.47E-06 5.023629975 -0.082043035 ASIANSDGPTAGSQT(ph)PPFKR ddPTM_HeLa_A486_30min_R1 2 ASIANSDGPTAGSQTPPFKR 20 1 J3KP75;O75167-5;O75167-2;O75167;O75167-4;F6TH74;H9KVA6 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASIANS(0.003)DGPT(0.267)AGS(0.267)QT(0.463)PPFKR;ASIANSDGPT(0.001)AGS(0.102)QT(0.898)PPFKR ; 129.22 4.41E-07 697170000 636840 675360 492000 237450 713990 704200 738820 792090 570930 838960 TRUE FALSE FALSE 592200.8046 621842.014 682515.5762 552795.6001 624434.7165 617322.9638 553959.4216 611748.3982 620418.6721 628878.9553 0.941676931 0.988810341 1.08528926 0.879017489 0.992933078 0.981624458 0.880868118 0.972760168 0.98654704 1 19.26242283 -5.265805991 24.99942965 0.954559874 1.003613991 0.154316153 0.052428578 685.8876913 3926800.237 0.014576994 0.022544311 5.42E-06 5.265805991 0.049054117 ASIGQS(ph)PGLPSTTFK ddPTM_HeLa_A485_30min_R1 4 ASIGQSPGLPSTTFK 15 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK ;;; 289.75 4.57E-67 1284620000 2039900 1869720 1811760 2499370 2524610 1837870 2425330 1898690 1960380 3103870 TRUE FALSE FALSE 2493668.717 2088367.49 2482005.418 2635904.254 2273250.964 1934098.031 1907138.432 1433033.3 2353810.284 2330132.331 1.070183304 0.896244158 1.06517788 1.131225132 0.975588782 0.83003785 0.818467864 0.615000823 1.010161634 1 21.15198046 -6.170579265 3.726761433 0.827641299 1.033885353 0.345560682 0.118165531 0.246677572 6.395163398 0.040052387 0.03973123 6.75E-07 6.170579265 0.206244054 ASIGQS(ph)PGLPSTTFK ddPTM_HeLa_A486_30min_R1 4 ASIGQSPGLPSTTFK 15 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK;ASIGQS(0.998)PGLPS(0.001)T(0.001)TFK;ASIGQS(1)PGLPSTTFK ;;; 289.98 4.51E-67 1675110000 3508780 3899090 2414830 1191580 3880920 3831860 3858460 3808900 3158770 3959700 TRUE FALSE FALSE 3262832.641 3590111.908 3349916.847 2774058.459 3394138.825 3359124.073 2893032.497 2941696.618 3432574.727 2968165.347 1.099275903 1.209539055 1.128615308 0.934603748 1.143514066 1.1317173 0.974687108 0.991082461 1.156463447 1 21.50114003 -5.017146979 24.85447888 1.050016318 1.158074922 0.263539519 0.076041525 855.5552584 1240128.488 0.020463534 0.036529346 9.61E-06 5.017146979 0.108058603 ASIHEAWTDGK ddPTM_HeLa_A485_30min_R1 1 ASIHEAWTDGK 11 0 O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 88.187 0.009569 15491000 49473 69757 66673 36323 147780 39513 83856 61071 67406 127930 FALSE FALSE TRUE 60478.09817 77914.47434 91338.1172 38307.23352 133066.5043 41581.83958 65939.48056 46093.24149 80933.76592 96039.40538 0.629721706 0.811276101 0.951048341 0.398869957 1.385540693 0.432966441 0.686587764 0.47994093 0.84271415 1 16.55133885 ASILNTWISLK ddPTM_HeLa_A485_30min_R1 2 ASILNTWISLK 11 0 P22234;P22234-2;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 0 ; ; 211.64 1.29E-15 29024000 22608.9 23723 25498 26102 36690 24041.8 31409 30069 23192 36249 FALSE FALSE TRUE 27638.17181 26497.19849 34930.77126 27527.88617 33037.01477 25300.59147 24698.21056 22694.5306 27846.42167 27212.79141 1.015631634 0.973703803 1.283615882 1.011578921 1.214025209 0.929731577 0.90759563 0.833965552 1.02328428 1 14.73199733 -6.296928906 20.97055105 0.926580379 1.098031267 0.386650544 0.100651486 88.33137347 52193.51275 0.034812755 0.030706101 5.05E-07 6.296928906 0.171450888 ASILNTWISLK ddPTM_HeLa_A486_30min_R1 2 ASILNTWISLK 11 0 P22234;P22234-2;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 0 ; ; 232 6.76E-27 38862000 34615 42412 31788 15528.5 47322 38156 47111 46249 34975 47344 FALSE FALSE TRUE 32188.66725 39051.11866 44097.16491 36151.13277 41386.4335 33448.70066 35323.32951 35719.11231 38006.66116 35488.75424 0.907010346 1.100380092 1.242567282 1.018664463 1.166184454 0.942515492 0.995338672 1.006491016 1.070949431 1 15.11507431 -6.26660247 24.89600226 1.002982098 1.092557319 0.186209807 0.087308864 697.5982956 3363750.112 0.03052321 0.027771947 5.41E-07 6.26660247 0.089575221 ASIQECILPDS(ph)PLYHNK ddPTM_HeLa_A486_30min_R1 1 ASIQECILPDSPLYHNK 17 0 Q9NXE4-3;Q9NXE4-6;Q9NXE4-2;Q9NXE4;Q9NXE4-4 Q9NXE4-3 SMPD4 Sphingomyelin phosphodiesterase 4 1 0 ASIQECILPDS(1)PLYHNK 146.89 4.80E-08 126840000 107190 119430 87143 35516 135440 111450 126620 109860 113510 102910 TRUE FALSE FALSE 99676.53453 109965.9318 120887.1034 82683.04288 118451.8523 97700.43214 94938.33675 84847.27623 123349.1382 77140.66617 1.292139924 1.425524789 1.567099552 1.071847665 1.535530585 1.266523054 1.230717097 1.099903338 1.599015724 1 16.23520398 -13.18875928 0.19845074 2.23E-14 1.393836238 0.228126693 0.179897214 144.6934815 1.911869859 58.7840882 0.43579602 6.48E-14 13.18875928 1.393836238 ASISVHS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 ASISVHSPQK 10 0 O43572;E7EMD6;J3QR74 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 ASISVHS(1)PQK;ASISVHS(1)PQK ; 70.563 0.0099706 850990000 857970 1239710 1160170 488070 1681210 985070 1441330 1506300 1102170 1122880 TRUE FALSE FALSE 1048822.467 1384683.3 1589365.162 514732.0282 1513822.829 1036646.742 1133378.071 1136877.563 1323365.409 842966.6811 1.244203941 1.642631116 1.885442447 0.61061966 1.795827597 1.229760043 1.344511113 1.348662514 1.569890529 1 19.68511608 -10.41562167 3.291422517 0.995145298 1.408002982 0.114217155 0.340820724 2921045426 3621445184 131447968.3 0.081331792 3.84E-11 10.41562167 0.412857684 ASISVHS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 ASISVHSPQK 10 0 O43572;E7EMD6;J3QR74 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 ASISVHS(1)PQK;ASISVHS(1)PQK ; 82.85 0.0042622 946210000 1815750 1816600 1321650 243674 1969860 1585760 1926770 1747080 1551030 1102420 TRUE FALSE FALSE 1688475.302 1672646 1833428.275 567285.3866 1722781.791 1390125.054 1444671.767 1349308.022 1685474.529 826366.8565 2.043251479 2.024096183 2.218661434 0.686481291 2.08476632 1.682212982 1.748220848 1.632819627 2.039620195 1 19.65642287 -10.98821731 2.580887147 0.271823346 1.781107345 0.24933648 0.4134382 13542799.5 3968669.09 58676769.02 0.104015467 1.03E-11 10.98821731 1.509283999 ASITPGTILIILTGR ddPTM_HeLa_A485_30min_R1 2 ASITPGTILIILTGR 15 0 Q02878;F8VR69;F8VZ45;U3KQR5 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 308.12 1.36E-80 291470000 53255 57977 69686 53597 82118 48391 66664 54676 51358 74738 FALSE FALSE TRUE 65101.39102 64756.90582 95465.75128 56524.8684 73942.04359 50924.67793 52420.69181 41266.62527 61665.07952 56107.19205 1.160303851 1.154164082 1.701488665 1.007444257 1.317871041 0.907631911 0.934295407 0.735496177 1.099058378 1 15.77589809 -6.264976655 24.65563524 0.918702306 1.271495156 0.436485622 0.188670594 236.6439361 1649456.103 0.06412251 0.058790516 5.43E-07 6.264976655 0.35279285 ASITPGTILIILTGR ddPTM_HeLa_A486_30min_R1 2 ASITPGTILIILTGR 15 0 Q02878;F8VR69;F8VZ45;U3KQR5 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 250.26 3.83E-40 270560000 82091 82383 84638 30685 101133 74143 87557 88224 70162 82541 FALSE FALSE TRUE 76336.84482 75854.67105 117412.1003 71436.23073 88447.95611 64995.99049 65649.31252 68137.32112 76243.69865 61872.19635 1.23378269 1.225989629 1.897655283 1.154577257 1.429526691 1.05048785 1.061047068 1.10125913 1.232277229 1 15.91700363 -6.26049323 24.95232588 1.093594995 1.394600942 0.360243193 0.199287798 98.32601282 2593124.798 0.067995337 0.064298165 5.49E-07 6.26049323 0.301005946 ASLENS(ph)LREVEAR ddPTM_HeLa_A486_30min_R1 1 ASLENSLREVEAR 13 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 AS(0.038)LENS(0.962)LREVEAR 60.949 0.0056282 0 64894 89120 122250 21474 138890 67509 73273 99445 86674 45695 TRUE FALSE FALSE 60345.26571 82057.80663 169588.474 49992.55724 121469.1211 59180.42596 54939.3204 76803.54437 94186.97211 34252.67458 1.761767992 2.395661292 4.951101661 1.459522734 3.546266755 1.727760728 1.603942497 2.242264154 2.749769858 1 15.06392902 -6.283362125 24.67126441 1.926088582 2.841624899 0.185284342 1.000038186 1286.097408 1447334.115 0.348525593 0.307631475 5.21E-07 6.283362125 0.915536317 ASLENSLR ddPTM_HeLa_A485_30min_R1 2 ASLENSLR 8 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 223.81 1.32E-24 54583000 273900 292210 302700 358350 412290 300320 439730 438990 309660 506050 FALSE FALSE TRUE 334828.1101 326381.4176 414681.3264 377925.7531 371240.96 316044.2908 345778.0932 331327.0142 371805.9216 379901.0482 0.88135611 0.859122182 1.091550888 0.994800501 0.977204358 0.831912132 0.910179361 0.8721403 0.978691487 1 18.53526417 ASLGAGDPLS(ph)PLHPARPLQMAAEPISAR ddPTM_HeLa_A485_30min_R1 2 ASLGAGDPLSPLHPARPLQMAAEPISAR 28 1 D6RBJ1;P61371 D6RBJ1 ISL1 Insulin gene enhancer protein ISL-1 1 0 AS(0.001)LGAGDPLS(0.998)PLHPARPLQMAAEPIS(0.001)AR;ASLGAGDPLS(1)PLHPARPLQMAAEPISAR ; 137.47 8.66E-07 183320000 136749 184952 166165 156395 227230 185814 224470 235130 173196 192359 TRUE FALSE FALSE 167168.3433 206580.5275 227636.3482 164938.4628 204606.1833 195542.9337 176510.1507 177463.9988 207954.8486 144407.4414 1.157615852 1.430539351 1.57634777 1.142174262 1.416867312 1.35410566 1.222306476 1.228911731 1.440056319 1 17.13978556 -12.51780458 0.304077959 1.35E-12 1.351009756 0.342614509 0.134646655 116.8520513 2.487342133 73.83523038 0.133524078 3.04E-13 12.51780458 1.351009756 ASLGS(ph)LEGEAEAEAS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(0.353)LGS(0.647)LEGEAEAEAS(0.5)S(0.5)PK 106.67 2.97E-05 0 35087 28517 26036 49969 41954 27474 46331 41120 31638 76741 TRUE FALSE FALSE 42891.9821 31851.81509 35667.79985 52698.67994 37776.91245 28912.49616 36432.00336 31035.25553 37987.4564 57610.88101 0.744511824 0.552878458 0.619115681 0.914734839 0.655725304 0.501858254 0.632380598 0.538704755 0.65937989 1 15.8140537 -10.63133821 3.813067201 1.014013052 0.643331373 0.474958759 0.111426169 0.014207986 0.001373681 0.11548069 0.027359977 2.34E-11 10.63133821 -0.370681678 ASLGS(ph)LEGEAEAEAS(ph)SPKGK ddPTM_HeLa_A485_30min_R1 2 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 ASLGS(1)LEGEAEAEAS(0.589)S(0.411)PKGK;AS(0.108)LGS(0.892)LEGEAEAEAS(0.66)S(0.34)PKGK ; 194.19 1.29E-19 903930000 636780 807650 363660 1021100 1573720 1478100 2885400 4325100 714060 1887870 TRUE FALSE FALSE 778429.5141 902097.6419 498192.9672 1076880.107 1417034.911 1555491.03 2268910.718 3264362.444 857365.2923 1417258.753 0.549250102 0.636508782 0.351518709 0.759833097 0.99984206 1.097534961 1.600914945 2.303293197 0.604946197 1 20.43467175 -6.05278993 1.446363498 1.458266483 0.53303057 0.408119832 0.42403224 0.362094986 1.544978343 0.175588708 0.188135309 8.86E-07 6.05278993 -0.925235912 ASLGS(ph)LEGEAEAEASS(ph)PK ddPTM_HeLa_A485_30min_R1 6 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 ASLGS(1)LEGEAEAEASS(1)PK;ASLGS(1)LEGEAEAEAS(0.001)S(0.999)PK;AS(0.001)LGS(0.999)LEGEAEAEAS(0.079)S(0.921)PK;AS(0.001)LGS(0.999)LEGEAEAEAS(0.058)S(0.942)PK;AS(0.093)LGS(0.907)LEGEAEAEAS(0.213)S(0.787)PK;ASLGS(1)LEGEAEAEASS(1)PK ;;;;; 396.45 1.57E-145 3786558000 2728760 2099520 1405927 4554330 2765680 2359830 3849670 3154540 1953160 6247980 TRUE FALSE FALSE 3335763.248 2345040.601 1926037.903 4803121.516 2490319.188 2483387.05 3027156.556 2380884.119 2345141.297 4690473.572 0.711178348 0.499958174 0.410627599 1.024016326 0.530931291 0.529453372 0.645383991 0.507599943 0.499979642 1 22.16130216 -9.894668521 4.179847577 1.000009267 0.594863435 0.354500379 0.163764217 288192770.1 639337850.9 42758.51836 0.040766087 1.27E-10 9.894668521 -0.405145832 ASLGS(ph)LEGEAEAEASS(ph)PK ddPTM_HeLa_A486_30min_R1 5 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(0.002)LGS(0.998)LEGEAEAEAS(0.067)S(0.933)PK;AS(0.003)LGS(0.997)LEGEAEAEAS(0.002)S(0.998)PK;ASLGS(1)LEGEAEAEASS(1)PK;ASLGS(1)LEGEAEAEAS(0.01)S(0.99)PK;ASLGS(1)LEGEAEAEASS(1)PK ;;;; 407.67 1.06E-162 4739424000 2491290 2489450 1238809 2072280 2067320 2884330 3816120 3320810 1807930 4903640 TRUE FALSE FALSE 2316663.436 2292176.916 1718509.021 4824372.567 1808017.449 2528490.69 2861286.413 2564734.056 1964642.828 3675736.627 0.630258278 0.623596614 0.46752779 1.312491361 0.491878944 0.687886796 0.778425307 0.69774696 0.534489553 1 21.80960197 -11.23316616 2.307545224 2.042404761 0.698013489 0.14161554 0.227296189 10503686.95 1626061.386 57347070.39 0.057466637 5.85E-12 11.23316616 -1.344391273 ASLGS(ph)LEGEAEAEASS(ph)PKGK ddPTM_HeLa_A486_30min_R1 2 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 ASLGS(1)LEGEAEAEAS(0.169)S(0.831)PKGK;AS(0.001)LGS(0.999)LEGEAEAEAS(0.17)S(0.83)PKGK ; 208.28 1.60E-26 783680000 1182270 770780 513020 1495980 1876190 1329100 2737100 3049100 698670 2500300 TRUE FALSE FALSE 1099398.978 709700.5857 711675.0832 3482717.043 1640860.755 1165129.155 2052248.63 2354886.491 759231.2781 1874208.606 0.586593709 0.378666806 0.379720316 1.858233407 0.875495263 0.621664606 1.094994775 1.256469789 0.405094329 1 20.83785011 ASLGS(ph)LEGEAEAEASSPK ddPTM_HeLa_A485_30min_R1 10 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;AS(0.016)LGS(0.984)LEGEAEAEASSPK;AS(0.036)LGS(0.964)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;AS(0.003)LGS(0.997)LEGEAEAEASSPK;AS(0.002)LGS(0.998)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK ;;;;;;;;; 441.68 3.44E-203 12359007000 3055084 2674242 1894734 3631943 3377313 3081352 4335955 4481757 2607899 5367310 TRUE FALSE FALSE 3734676.896 2986971.339 2595674.953 3830346.85 3041055.859 3242686.826 3409542.793 3382599.069 3131280.408 4029338.395 0.926870997 0.741305655 0.644193835 0.950614338 0.754728335 0.804769048 0.846179312 0.839492427 0.777120237 1 21.94211154 -13.99999992 0.319099242 2.815485129 0.798789965 0.306092088 0.085216414 394.2589129 3.51088922 482.998228 0.07596177 1.00E-14 13.99999992 -2.016695163 ASLGS(ph)LEGEAEAEASSPK ddPTM_HeLa_A486_30min_R1 6 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGS(1)LEGEAEAEASSPK;AS(0.004)LGS(0.996)LEGEAEAEASSPK;AS(0.042)LGS(0.958)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK ;;;;; 463.67 4.19E-226 12495700000 7129120 7214760 4538290 3467180 7882390 8795960 10009370 9395750 6126330 9127200 TRUE FALSE FALSE 6629405.503 6643036.142 6295637.428 8071770.262 6893707.146 7710803.886 7504919.758 7256542.833 6657365.217 6841689.712 0.968971962 0.970964253 0.920187511 1.179791923 1.00760301 1.127032095 1.09693951 1.060636062 0.97305863 1 22.70592125 -5.23239184 24.99993571 1.067808119 0.955133532 0.414675144 0.059842578 671.1435813 577622.714 0.015710926 0.027206347 5.86E-06 5.23239184 -0.112674587 ASLGSLEGEAEAEAS(ph)SPKGK ddPTM_HeLa_A485_30min_R1 1 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.5)S(0.5)PKGK 79.69 0.001172 1878300000 110770 127120 68852 185790 274830 244240 549310 749830 138140 382330 TRUE FALSE FALSE 135410.4043 141985.5782 94323.21997 195939.2373 247466.9602 257028.0287 431945.431 565933.0168 165863.4309 287022.1673 0.471776817 0.494685061 0.328626952 0.682662385 0.862187623 0.895498878 1.504920108 1.971739752 0.577876728 1 18.13080264 -6.107661998 1.359304612 1.318287197 0.454557881 0.472619539 0.351797041 0.342328938 1.291575476 0.154686579 0.158859871 7.80E-07 6.107661998 -0.863729316 ASLGSLEGEAEAEAS(ph)SPKGK ddPTM_HeLa_A486_30min_R1 1 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.566)S(0.434)PKGK 84.762 0.00052328 139060000 59926 58658 40930 57978 105310 76018 124360 133320 44562 106910 TRUE FALSE FALSE 55725.49686 54009.72645 56779.19214 134975.714 92101.03782 66639.67205 93243.81265 102965.9464 48424.67004 80139.04013 0.695360174 0.673950254 0.708508513 1.684269163 1.149265547 0.831550664 1.163525449 1.284841273 0.604258174 1 16.29021761 -5.05046775 24.99952792 1.114426699 0.686296736 0.331301528 0.266646736 384.0604523 190246.2781 0.072337776 0.125294867 8.90E-06 5.05046775 -0.428129962 ASLGSLEGEAEAEASS(ph)PK ddPTM_HeLa_A485_30min_R1 10 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.018)S(0.982)PK;ASLGSLEGEAEAEASS(1)PK;ASLGSLEGEAEAEAS(0.021)S(0.979)PK;ASLGSLEGEAEAEAS(0.032)S(0.968)PK;ASLGSLEGEAEAEAS(0.111)S(0.889)PK;ASLGSLEGEAEAEAS(0.058)S(0.942)PK;ASLGSLEGEAEAEAS(0.021)S(0.979)PK;ASLGSLEGEAEAEAS(0.035)S(0.965)PK;ASLGSLEGEAEAEAS(0.03)S(0.97)PK;ASLGSLEGEAEAEASS(1)PK ;;;;;;;;; 371.64 1.27E-129 12541810000 7134970 5543110 4060386 12243180 7646950 6169300 10394690 8650050 5621680 17558800 TRUE FALSE FALSE 8722119.461 6191328.496 5562491.748 12911993.92 6885592.808 6492315.008 8173779.565 6528611.675 6749899.611 13181714.31 0.661683242 0.469690691 0.421985458 0.979538292 0.522359433 0.49252433 0.620084715 0.495277892 0.512065385 1 23.65203467 -10.38644414 5.069540758 1.000330089 0.574326151 0.416625113 0.15086264 0.000565813 6.85E-05 0.146844605 0.035587987 4.11E-11 10.38644414 -0.426003938 ASLGSLEGEAEAEASS(ph)PK ddPTM_HeLa_A486_30min_R1 8 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.001)S(0.999)PK;ASLGSLEGEAEAEAS(0.058)S(0.942)PK;ASLGSLEGEAEAEAS(0.014)S(0.986)PK;ASLGSLEGEAEAEAS(0.141)S(0.859)PK;ASLGSLEGEAEAEASS(1)PK;ASLGSLEGEAEAEAS(0.003)S(0.997)PK;ASLGSLEGEAEAEASS(1)PK;ASLGSLEGEAEAEAS(0.03)S(0.97)PK ;;;;;;; 468.7 2.25E-226 14147211000 3227010 3434997 1931547 2784934 3089172 3952893 5525330 4794341 2902277 6625790 TRUE FALSE FALSE 3000813.263 3162795.328 2679493.727 6483467.095 2701699.242 3465225.252 4142833.993 3702774.214 3153848.707 4966649.057 0.604192732 0.636806686 0.539497294 1.305400688 0.543968219 0.697698833 0.834130607 0.745527653 0.635005347 1 22.24384138 -11.68270123 1.977156394 6.969901716 0.733226887 0.129710349 0.211641719 6138429.646 181105.9543 165352061.4 0.052961517 2.08E-12 11.68270123 -6.236674828 ASLGSLEGEAEAEASS(ph)PKGK ddPTM_HeLa_A485_30min_R1 5 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.069)S(0.931)PKGK;ASLGSLEGEAEAEAS(0.193)S(0.807)PKGK;ASLGSLEGEAEAEAS(0.208)S(0.792)PKGK;ASLGSLEGEAEAEAS(0.072)S(0.928)PKGK;ASLGSLEGEAEAEAS(0.064)S(0.936)PKGK ;;;; 113.71 5.25E-07 2023839000 313788 392507 208564 500445 683571 680842 1220310 1689720 355123 773304 TRUE FALSE FALSE 383589.058 438407.2793 285720.5027 527783.0432 615512.2711 716489.8343 959580.7995 1275313.521 426392.9287 580533.5444 0.660752616 0.755179926 0.492168808 0.909134448 1.060252723 1.234191962 1.652929118 2.196795574 0.734484567 1 19.14701991 -5.988688441 1.494793991 1.477042509 0.657549219 0.404478185 0.376504431 0.353252257 1.617658591 0.15022246 0.1692845 1.03E-06 5.988688441 -0.81949329 ASLGSLEGEAEAEASS(ph)PKGK ddPTM_HeLa_A486_30min_R1 2 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.078)S(0.922)PKGK;ASLGSLEGEAEAEAS(0.191)S(0.809)PKGK ; 147.35 8.80E-10 2007210000 349590 285250 211377 442630 641880 430440 808360 876280 243391 728960 TRUE FALSE FALSE 325085.5463 262645.7511 293227.8353 1030465.009 561369.4251 377336.6892 606099.778 676770.1731 264488.3278 546423.6713 0.594933132 0.480663201 0.536630916 1.885835229 1.027351952 0.690556996 1.109212155 1.238544757 0.484035267 1 19.05966046 -5.076588774 24.99998606 1.069028968 0.530440728 0.325780964 0.345849758 134.3339191 43848.24479 0.094301051 0.163334308 8.38E-06 5.076588774 -0.53858824 ASLLHSMPTHS(ph)SPR ddPTM_HeLa_A485_30min_R1 2 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASLLHSMPT(0.003)HS(0.499)S(0.499)PR;ASLLHSMPTHS(0.676)S(0.324)PR ; 200.69 5.65E-22 1000090000 404050 658580 735790 229033 828780 543640 627680 675910 553240 439522 TRUE FALSE FALSE 493929.5285 735595.2021 1007989.34 241544.4928 746263.7532 572104.1498 493571.0403 510142.0127 664270.1934 329957.2542 1.496950051 2.229365146 3.054908861 0.732047833 2.261698277 1.733873532 1.495863582 1.546085156 2.013200755 1 18.33191961 -10.46160817 0.139267679 1.53E-12 2.305266797 0.167664789 0.579341292 68.8230695 1.661476447 29.4520529 4.75703392 3.45E-11 10.46160817 2.305266797 ASLLHSMPTHSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASLLHSMPTHS(0.138)S(0.862)PR;ASLLHSMPTHS(0.424)S(0.576)PR ; 232.15 9.57E-29 2595380000 477320 913170 951300 277501 1090960 642350 769610 946840 761830 588890 TRUE FALSE FALSE 583498.1873 1019957.288 1303225.457 292660.177 982340.1918 675982.4527 605176.5364 714626.0054 914722.2931 442090.5607 1.319861221 2.307122971 2.9478699 0.661991463 2.222033853 1.529058778 1.368897213 1.616469721 2.069083519 1 18.75398241 -5.253860828 24.99327448 1.547460964 2.203168419 0.238213019 0.565111793 894.2398789 2949103.258 0.1503939 0.254296713 5.57E-06 5.253860828 0.655707455 ASLLHSMPTHSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASLLHSMPTHS(0.074)S(0.926)PR;ASLLHSMPTHS(0.124)S(0.876)PR;ASLLHSMPTHS(0.186)S(0.814)PR ;; 245.97 9.86E-36 2609220000 1176610 1253400 1434120 72007 1770420 882510 1063640 1121570 1138850 542770 TRUE FALSE FALSE 1094135.715 1154076.019 1989449.671 167635.935 1548357.415 773634.8889 797506.022 866212.9947 1237566.435 406856.8592 2.689239939 2.836565227 4.889802461 0.412026813 3.805656413 1.901491572 1.96016364 2.129036233 3.041773555 1 18.63416179 -8.313044402 0.126639469 4.88E-09 3.959413813 0.173463445 1.12249265 22.63783205 1.550813683 27.26268064 16.90792032 4.86E-09 8.313044402 3.959413808 ASLLT(ph)DEEDVDMALDQR ddPTM_HeLa_A485_30min_R1 3 ASLLTDEEDVDMALDQR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR ;; 271.68 1.32E-58 372117000 126315 179142 186880 144723 227094 169329 226819 236632 183712 208283 TRUE FALSE FALSE 154413.336 200091.0986 256014.6887 152628.851 204483.724 178194.8046 178357.2677 178597.631 220581.3133 156361.8813 0.987538233 1.279666738 1.63732162 0.976125701 1.307759425 1.139630728 1.140669748 1.142206972 1.41071028 1 17.25452932 ASLLT(ph)DEEDVDMALDQR ddPTM_HeLa_A486_30min_R1 4 ASLLTDEEDVDMALDQR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR ;;; 369.33 6.46E-119 601602000 228645 296630 243571 97500 352143 265060 297806 304083 220873 278483 TRUE FALSE FALSE 212618.1662 273123.9585 337888.2143 226984.9274 307973.9413 232359.5921 223291.7889 234849.939 240018.4495 208749.0442 1.018534801 1.308384235 1.618633587 1.087357924 1.475331025 1.113104939 1.069666162 1.125034799 1.149794244 1 17.67141007 -6.401728448 8.854900864 1.095874856 1.307539604 0.289754792 0.164497611 0.436030028 29.80537398 0.057292834 0.050467602 3.97E-07 6.401728448 0.211664748 ASLPNFLDHIIASVVENKK ddPTM_HeLa_A486_30min_R1 1 ASLPNFLDHIIASVVENKK 19 1 Q7LBC6;Q7LBC6-2;Q7LBC6-3 Q7LBC6 KDM3B Lysine-specific demethylase 3B 0 0 80.975 0.0012976 1220600 2764.3 2920.7 1943.5 1547.3 3252.3 3486.9 4628.2 4139.2 2975.8 4595.3 FALSE FALSE TRUE 2570.536845 2689.253095 2696.075249 3602.192596 2844.366208 3056.72173 3470.175408 3196.794518 3233.74474 3444.60697 0.746249679 0.780714061 0.782694593 1.045748507 0.825744775 0.88739347 1.007422745 0.928057844 0.938784822 1 11.75012367 -5.150272237 7.453884754 0.939308466 0.768439331 0.646444277 0.06006644 0.173379808 10.3930583 0.016229036 0.028294651 7.08E-06 5.150272237 -0.170869135 ASLPQAATFGELSGPLKPGS(ph)PYRPPVPR ddPTM_HeLa_A485_30min_R1 2 ASLPQAATFGELSGPLKPGSPYRPPVPR 28 2 H0Y613;Q14687-2;Q14687-3;Q14687 H0Y613 GSE1 Genetic suppressor element 1 1 0 ASLPQAATFGELSGPLKPGS(1)PYRPPVPR;ASLPQAATFGELSGPLKPGS(1)PYRPPVPR ; 228.34 5.01E-39 1949260000 446010 401600 339780 503750 596020 417870 631420 666020 395730 589200 TRUE FALSE FALSE 545223.3858 448563.6265 465478.7614 531268.5869 536678.156 439749.0271 496511.9588 502677.5507 475149.3811 442323.2834 1.232635509 1.014108105 1.05234967 1.201086641 1.213316541 0.994180147 1.122509208 1.136448316 1.074212909 1 18.75474166 -8.055861502 4.241564186 1.000059085 1.116339314 0.186663792 0.077491254 0.475695541 24.09693117 0.075160692 0.019697554 8.79E-09 8.055861502 0.116280229 ASLS(ph)LIEK ddPTM_HeLa_A485_30min_R1 1 ASLSLIEK 8 0 P52292 P52292 KPNA2 Importin subunit alpha-1 1 0 AS(0.002)LS(0.998)LIEK 132.25 0.00052541 89440000 144890 118740 103080 153770 187060 136770 181200 207100 121800 210550 TRUE FALSE FALSE 177120.2806 132625.6101 141213.5815 162170.0657 168435.6496 143931.0657 142485.1397 156308.4003 146244.1428 158063.7599 1.120562239 0.839063997 0.893396321 1.025978794 1.065618392 0.91058865 0.901440911 0.988894611 0.925222473 1 17.27014711 -4.232694326 24.03812179 0.951141571 1.120562672 0.3771973 0.065727 7817.637674 6537348.068 0.017309044 1.703881125 5.85E-05 4.232694326 0.169421101 ASLS(ph)LIEK ddPTM_HeLa_A486_30min_R1 3 ASLSLIEK 8 0 P52292 P52292 KPNA2 Importin subunit alpha-1 1 0 AS(0.002)LS(0.998)LIEK;ASLS(1)LIEK;ASLS(1)LIEK ;; 152.54 0.0001896 225209000 288785 319224 225695 153815 367059 357403 416091 415014 245018 380704 TRUE FALSE FALSE 268542.6628 293927.5276 313090.1483 358089.0934 321019.0375 313310.2517 311980.6308 320524.3719 266256.3575 285373.2404 0.941022579 1.029975786 1.097125112 1.254809641 1.124909389 1.097896394 1.09323716 1.12317599 0.933010948 1 18.12249053 -9.64885279 9.593694637 1.000002883 1.085488779 0.056664852 0.088991527 0 0 0.089975069 0.02182216 2.24E-10 9.64885279 0.085485895 ASLS(ph)LR ddPTM_HeLa_A486_30min_R1 1 ASLSLR 6 0 Q9UM82 Q9UM82 SPATA2 Spermatogenesis-associated protein 2 1 0 AS(0.01)LS(0.99)LR 67.277 0.030653 58877000 68168 82863 65736 25986 78778 87716 94507 107050 74438 92010 TRUE FALSE FALSE 63389.77522 76296.6341 91190.73967 60496.72126 68896.92866 76894.49175 70860.34901 82677.05189 80890.34577 68970.09712 0.919090706 1.106227732 1.322177922 0.877144209 0.998939128 1.114896092 1.027406832 1.198737646 1.172832128 1 16.07368338 -7.248318459 24.29232034 1.139338672 1.058347421 0.059062688 0.124850244 1460.835283 2704625.894 0.060247862 0.034518643 5.65E-08 7.248318459 -0.080991251 ASLSPDASDFEHITAET(ph)PSRPLSS(ph)TSNPFK ddPTM_HeLa_A485_30min_R1 1 ASLSPDASDFEHITAETPSRPLSSTSNPFK 30 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 2 0 ASLSPDASDFEHIT(0.002)AET(0.854)PS(0.127)RPLS(0.033)S(0.419)T(0.369)S(0.197)NPFK 143.16 2.22E-09 111320000 102640 99329 75949 117690 130620 122620 160750 153470 123210 210580 TRUE FALSE FALSE 125471.9139 110944.6625 104045.6956 124119.1067 117615.0142 129040.1936 126404.4493 115831.2419 147937.1169 158086.2814 0.793692614 0.701798167 0.658157651 0.785135216 0.743992541 0.816264336 0.799591515 0.732709004 0.93579984 1 17.27035265 -8.090759629 0.492055966 1.013961485 0.726169816 0.696301699 0.054076008 0.662478186 0.385134597 0.067991649 0.031311791 8.11E-09 8.090759629 -0.287791669 ASLSPDASDFEHITAETPSRPLS(ph)STSNPFK ddPTM_HeLa_A485_30min_R1 1 ASLSPDASDFEHITAETPSRPLSSTSNPFK 30 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 ASLSPDASDFEHITAETPS(0.003)RPLS(0.96)S(0.029)T(0.006)S(0.001)NPFK 217.83 6.84E-39 203230000 44995 45460 39731 45862 68515 54931 67613 67371 46361 80499 TRUE FALSE FALSE 55003.98252 50776.15155 54429.15024 48367.32493 61693.40603 57807.10222 53166.9302 50848.15662 55665.22745 60432.08077 0.910178531 0.840218488 0.900666493 0.800358424 1.020871783 0.956563161 0.879779904 0.841409992 0.921120483 1 15.883027 -5.743094191 24.99969485 0.926849494 0.86393938 0.276177633 0.057196638 406.2903009 553665.27 0.017628513 0.022714885 1.81E-06 5.743094191 -0.062910114 ASLSPDASDFEHITAETPSRPLS(ph)STSNPFK ddPTM_HeLa_A486_30min_R1 1 ASLSPDASDFEHITAETPSRPLSSTSNPFK 30 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 ASLSPDASDFEHITAET(0.036)PS(0.027)RPLS(0.909)S(0.027)T(0.001)SNPFK 288.85 5.69E-79 206890000 86926 100130 75004 15575 108800 99281 105120 104070 82574 78832 TRUE FALSE FALSE 80832.93629 92195.33413 104047.5575 36259.38712 95153.28948 87032.71964 78817.86415 80375.53283 89731.58081 59091.95409 1.367917808 1.56020114 1.76077368 0.613609546 1.610257961 1.472835363 1.33381719 1.360177271 1.51850759 1 15.85067409 -10.14200658 3.852195744 0.999825977 1.397234252 0.145442485 0.29066184 194267835.9 343078857.6 472084.162 0.071357079 7.21E-11 10.14200658 0.397408275 ASLVALPEQTAS(ph)EEETPPPLLTK ddPTM_HeLa_A485_30min_R1 1 ASLVALPEQTASEEETPPPLLTK 23 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 ASLVALPEQT(0.097)AS(0.902)EEETPPPLLTK 103.24 0.00031851 184900000 180640 208550 185420 198300 237350 227300 266930 283460 187050 247590 TRUE FALSE FALSE 220822.7448 232938.1084 254014.574 209132.6269 213718.6006 239201.0765 209898.2249 213940.9906 224589.2193 185870.3696 1.188047053 1.253228844 1.366622203 1.125153124 1.149826092 1.286924199 1.129272113 1.151022571 1.208311039 1 17.50393728 -14 0.135100347 0.281486357 1.288567735 0.462995255 0.070242388 128.6332502 1.078926814 24.80591788 0.49091348 1.00E-14 14 1.007081378 ASLVALPEQTASEEET(ph)PPPLLTK ddPTM_HeLa_A486_30min_R1 2 ASLVALPEQTASEEETPPPLLTK 23 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 ASLVALPEQTAS(0.002)EEET(0.998)PPPLLTK;ASLVALPEQTASEEET(1)PPPLLTK ; 129.84 3.40E-06 64893000 154910 182532 135284 44359 197605 166514 185066 166492 166349 145194 TRUE FALSE FALSE 144051.609 168067.4995 187669.5878 103269.9938 172819.5383 145971.1957 138760.5294 128585.4061 180768.2653 108836.4773 1.323560009 1.544220317 1.724326186 0.948854615 1.587882505 1.341197356 1.274945062 1.181455053 1.660916171 1 16.73180264 -12.68369776 0.230129654 4.60E-27 1.440822888 0.200232296 0.227751082 135.0675229 2.33575594 64.90328876 0.398347243 2.07E-13 12.68369776 1.440822888 ASLVS(ph)EEEEDEEEDKATPR ddPTM_HeLa_A485_30min_R1 4 ASLVSEEEEDEEEDKATPR 19 1 Q96GN5-5;Q96GN5-2;Q96GN5;Q96GN5-4;C9J8L0;C9IZR6 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 ASLVS(1)EEEEDEEEDKATPR;ASLVS(1)EEEEDEEEDKATPR;AS(0.04)LVS(0.96)EEEEDEEEDKATPR;AS(0.001)LVS(0.999)EEEEDEEEDKATPR ;;; 288.95 3.52E-71 2811980000 462251 393789 331060 835790 521028 440681 636882 504182 369025 994530 TRUE FALSE FALSE 565077.1402 439839.198 453532.8706 881447.0914 469152.6229 463754.3757 500806.9579 380530.574 443084.9326 746611.974 0.75685518 0.589113507 0.60745459 1.180595975 0.628375434 0.621145109 0.670772738 0.509676495 0.593460791 1 19.50999912 ASLVS(ph)EEEEDEEEDKATPR ddPTM_HeLa_A486_30min_R1 4 ASLVSEEEEDEEEDKATPR 19 1 Q96GN5-5;Q96GN5-2;Q96GN5;Q96GN5-4;C9J8L0;C9IZR6 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 ASLVS(1)EEEEDEEEDKATPR;ASLVS(1)EEEEDEEEDKATPR;ASLVS(1)EEEEDEEEDKATPR;AS(0.005)LVS(0.995)EEEEDEEEDKATPR ;;; 275.2 9.83E-70 2931900000 207928 228170 254462 106173 327895 243590 295554 264194 232890 298600 TRUE FALSE FALSE 193353.3209 210088.9782 352996.5011 247176.1097 286767.3516 213538.3424 221603.2631 204042.7935 253077.0927 223828.6164 0.863845401 0.938615364 1.577083872 1.104309688 1.281191637 0.954026102 0.99005778 0.9116028 1.130673534 1 17.77203497 -6.280035703 24.4461935 0.991296315 1.161952608 0.144393989 0.188643975 1239.954277 1630002.725 0.069099801 0.061058168 5.25E-07 6.280035703 0.170656293 ASLVSSAS(ph)K ddPTM_HeLa_A485_30min_R1 1 ASLVSSASK 9 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 ASLVS(0.015)S(0.21)AS(0.775)K 92.606 0.0031404 173600000 181420 152350 103650 192970 239880 226280 318270 351020 145020 329280 TRUE FALSE FALSE 221776.2531 170166.0072 141994.4482 203511.4625 215996.7049 238127.6709 250269.0145 264931.7946 174124.1838 247196.5559 0.897165627 0.688383406 0.574419201 0.823277904 0.873785252 0.963313061 1.012429213 1.071745493 0.704395671 1 17.91529912 -5.750476095 2.300969185 0.955102469 0.717054107 0.406071849 0.118511911 0.281383996 3.056384658 0.039452232 0.050754571 1.78E-06 5.750476095 -0.238048362 ASMGVLS(ph)GK ddPTM_HeLa_A485_30min_R1 2 ASMGVLSGK 9 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ASMGVLS(1)GK;ASMGVLS(1)GK ; 119.03 0.00050909 276850000 464900 469620 407770 567280 709710 538060 663640 753210 421610 784170 TRUE FALSE FALSE 568315.4011 524537.9738 558621.0917 598269.07 639048.7805 566231.9896 521847.8926 568484.0665 506223.2598 588690.8506 0.965388541 0.891024505 0.948920968 1.016270372 1.085542233 0.961849482 0.886454906 0.96567505 0.859913585 1 19.16715068 -9.400621199 10.45496082 1.000002018 0.955848719 0.046460113 0.062421135 0 0 0.064980854 0.015760172 3.98E-10 9.400621199 -0.044153299 ASMGVLS(ph)GK ddPTM_HeLa_A486_30min_R1 2 ASMGVLSGK 9 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ASMGVLS(1)GK;ASMGVLS(1)GK ; 133.05 0.00021325 349790000 765640 834370 462890 327530 850670 895420 970660 908510 626500 1061390 TRUE FALSE FALSE 711972.5898 768251.4825 642133.4046 762506.3924 743971.0364 784952.1844 727790.6014 701662.1056 680805.5244 795611.0355 0.894875207 0.965611899 0.807094643 0.95839092 0.935093913 0.986602937 0.914756796 0.881916005 0.85570146 1 19.60170376 -1.837966892 23.81610058 0.918044401 0.902609958 0 0.058006516 0 0 0.012998825 0 0.014522223 1.837966892 -0.015434443 ASMGVLS(ph)GKR ddPTM_HeLa_A485_30min_R1 1 ASMGVLSGKR 10 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ASMGVLS(1)GKR 62.685 0.01456 57276000 105480 110340 88384 116660 156420 131860 145890 166770 99096 161650 TRUE FALSE FALSE 128943.6621 123243.3032 121080.9196 123032.8404 140846.2756 138763.9857 114719.4097 125869.396 118983.6582 121353.6299 1.062544748 1.015571625 0.997752763 1.013837332 1.160626803 1.143467944 0.945331505 1.037211627 0.980470533 1 16.88885774 -6.779533773 24.99974302 0.993854408 1.062236035 0.312202459 0.054229878 385.6751146 532855.1509 0.025359481 0.017135291 1.66E-07 6.779533773 0.068381627 ASMGVLS(ph)GKR ddPTM_HeLa_A486_30min_R1 2 ASMGVLSGKR 10 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ASMGVLS(1)GKR;AS(0.009)MGVLS(0.991)GKR ; 60.401 0.017161 356520000 494110 489180 317054 212455 579760 490450 577420 579640 373840 582590 TRUE FALSE FALSE 459475.4406 450415.5952 439825.7998 494605.9769 507041.0948 429943.2655 432943.4087 447668.6255 406244.7522 436705.672 1.052139851 1.031393967 1.007144693 1.132584275 1.161059101 0.984514956 0.991384899 1.025103758 0.930248399 1 18.73630174 -6.342697372 24.99995281 0.988139988 1.073561833 0.474318979 0.047612806 104.0654537 32015.6769 0.01821717 0.016066029 4.54E-07 6.342697372 0.085421845 ASMSEFLES(ph)EDGEVEQQR ddPTM_HeLa_A485_30min_R1 3 ASMSEFLESEDGEVEQQR 18 0 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 0 ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR ;; 292.44 1.53E-78 1279360000 412046 548890 518782 461034 685268 510101 610532 692567 528622 616705 TRUE FALSE FALSE 503704.2112 613077.9108 710701.0501 486219.12 617040.3118 536809.0996 480086.8506 522713.8573 634711.5866 462971.7931 1.087980345 1.32422303 1.535084989 1.050213268 1.332781653 1.15948554 1.036967819 1.129040398 1.370950879 1 18.82056477 -6.378120762 6.273088925 1.138938733 1.271869066 0.142608192 0.155697456 0.500804618 24.07962607 0.055498821 0.048756526 4.19E-07 6.378120762 0.132930333 ASMSEFLES(ph)EDGEVEQQR ddPTM_HeLa_A486_30min_R1 2 ASMSEFLESEDGEVEQQR 18 0 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 0 ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR ; 213.55 4.44E-26 435100000 203197 225665 208933 78657 249650 207231 247727 234700 213210 214950 TRUE FALSE FALSE 188953.9396 207782.4835 289837.453 183117.4711 218336.5691 181664.9462 185743.0844 181263.9335 231691.2145 161125.1209 1.17271558 1.289572243 1.798834666 1.136492374 1.355074664 1.127477486 1.152787867 1.124988658 1.437958359 1 17.29782192 ASNGDAWVEAHGK ddPTM_HeLa_A485_30min_R1 1 ASNGDAWVEAHGK 13 0 P38646;A0A3B3ITI4;D6RJI2 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 81.904 0.009257 19041000 5909.6 6559.1 6371.1 7296.2 9188.9 8857.1 9286.7 9798.5 7892.3 13389 FALSE FALSE TRUE 7224.170132 7326.129688 8728.035014 7694.772931 8274.020852 9320.84406 7302.52068 7395.402512 9476.212218 10051.36871 0.718725016 0.728868864 0.868342936 0.765544789 0.823173549 0.927320879 0.726520029 0.735760743 0.942778292 1 13.29510435 -14 0.136431955 1.68206414 0.726863179 0.447036826 0.073825597 144.0864166 1.215709731 26.66869222 0.50876343 1.00E-14 14 -0.955200961 ASNTS(ph)TPTKGNTETSASASQTNHVK ddPTM_HeLa_A485_30min_R1 1 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 AS(0.029)NT(0.101)S(0.433)T(0.433)PT(0.004)KGNTETSASASQTNHVK 139.72 4.79E-07 746050000 43511 44358 36382 31733 58539 61339 69526 66602 42094 63238 TRUE FALSE FALSE 53189.87184 49545.28224 49841.21578 33466.49344 52710.65162 64550.61519 54671.20212 50267.75507 50541.87969 47473.93041 1.12040169 1.043631353 1.049864954 0.704944654 1.110307303 1.359706572 1.151604716 1.05884966 1.064623874 1 15.53484788 -5.976172897 24.99782985 1.143601395 0.979079763 0.209093443 0.136053873 347.7439379 364828.2996 0.044079912 0.049979425 1.06E-06 5.976172897 -0.164521632 ASNTST(ph)PTKGNTETSASASQTNHVK ddPTM_HeLa_A485_30min_R1 3 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ASNT(0.007)S(0.05)T(0.942)PT(0.001)KGNTETSASASQTNHVK;AS(0.004)NT(0.012)S(0.037)T(0.532)PT(0.405)KGNT(0.009)ETSASASQTNHVK;AS(0.004)NT(0.018)S(0.088)T(0.445)PT(0.445)KGNTETSASASQTNHVK ;; 249 1.43E-49 1774180000 290415 331369 241526 219237 443846 389150 519629 559131 300087 448581 TRUE FALSE FALSE 355016.8148 370119.722 330876.5181 231213.3622 399655.1338 409525.2923 408606.0192 422003.2456 360311.7083 336758.0122 1.054219356 1.099067308 0.982534954 0.686586076 1.186772458 1.216081808 1.213352034 1.253134982 1.069942497 1 18.36135275 ASNTST(ph)PTKGNTETSASASQTNHVK ddPTM_HeLa_A486_30min_R1 3 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ASNTS(0.04)T(0.958)PT(0.002)KGNTETSASASQTNHVK;AS(0.002)NT(0.039)S(0.145)T(0.811)PT(0.002)KGNTETSASASQTNHVK;AS(0.001)NT(0.024)S(0.112)T(0.848)PT(0.015)KGNTETSASASQTNHVK ;; 272.98 4.67E-75 2041550000 1035950 892720 525300 95378 980070 861000 1138910 1087730 734670 792770 TRUE FALSE FALSE 963335.2547 821977.616 728710.228 222044.8041 857140.4818 754778.574 853942.6718 840077.624 798351.7871 594255.2319 1.621079972 1.383206359 1.226257993 0.373652249 1.442377678 1.270125248 1.436996472 1.413664666 1.34344932 1 19.18072317 ASPAAAEEVVPEWASCLKS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ASPAAAEEVVPEWASCLKSPR 21 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 ASPAAAEEVVPEWAS(0.064)CLKS(0.936)PR;ASPAAAEEVVPEWAS(0.182)CLKS(0.818)PR ; 149.73 6.76E-10 272760000 161024 173898 146984 205096 245590 186281 239050 256935 178436 304220 TRUE FALSE FALSE 196843.2333 194233.8584 201359.4981 216299.8751 221138.1973 196034.3851 187975.0146 193921.2884 214246.4685 228383.5528 0.861897588 0.850472182 0.881672501 0.947090421 0.968275494 0.858355966 0.823067215 0.849103563 0.938099377 1 17.80109923 -4.990897771 7.736108898 0.903053152 0.858368493 0.139291625 0.053105841 0.330637483 133.0377617 0.015011449 0.030149073 1.02E-05 4.990897771 -0.044684659 ASPAAAEEVVPEWASCLKS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ASPAAAEEVVPEWASCLKSPR 21 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 ASPAAAEEVVPEWAS(0.344)CLKS(0.656)PR;ASPAAAEEVVPEWAS(0.002)CLKS(0.998)PR ; 182.41 1.92E-19 362830000 192765 258620 191200 106235 309290 287790 315380 330960 221430 281160 TRUE FALSE FALSE 179253.1689 238126.0093 265237.7605 247320.4488 270495.9642 252285.3958 236468.5883 255607.6328 240623.7307 210755.706 0.850525817 1.129867437 1.258508088 1.17349349 1.283457371 1.197051319 1.122003256 1.212814769 1.1417187 1 17.68521217 -4.281094886 3.603047704 1.184710117 0.819095044 0.61876987 0.075123312 0.150906644 3.586913298 0.017853171 0.144490252 5.23E-05 4.281094886 -0.365615073 ASPAPGS(ph)GHPEGPGAHLDMNSLDR ddPTM_HeLa_A485_30min_R1 1 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 0 AS(0.417)PAPGS(0.583)GHPEGPGAHLDMNSLDR 205.2 8.56E-29 5798900000 363570 534280 313420 433860 424270 465690 642450 556730 453630 973860 TRUE FALSE FALSE 444444.8922 596759.3984 429367.1005 457560.6732 382028.1891 490072.8083 505185.3092 420191.0946 544669.3801 731094.6246 0.607917057 0.816254666 0.587293472 0.625856979 0.522542741 0.670327468 0.690998528 0.574742421 0.745005314 1 19.47969862 -8.078320964 4.904207008 0.99995469 0.640585617 0.680770595 0.075345302 0.255194959 14.4787288 0.073141487 0.019070811 8.35E-09 8.078320964 -0.359369073 ASPAPGS(ph)GHPEGPGAHLDMNSLDR ddPTM_HeLa_A486_30min_R1 2 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 0 AS(0.388)PAPGS(0.612)GHPEGPGAHLDMNSLDR;AS(0.336)PAPGS(0.664)GHPEGPGAHLDMNSLDR ; 146.36 2.32E-09 7417770000 397194 439382 382528 63877 530773 444901 466207 542466 552236 457625 TRUE FALSE FALSE 369352.7517 404563.7701 530653.0861 148708.8842 464198.5011 390013.638 349557.0776 418958.3337 600104.2611 343032.7214 1.076727463 1.179373701 1.54694597 0.433512242 1.353219306 1.136957537 1.019019632 1.221336356 1.749408216 1 18.38798667 -7.532476936 24.94041438 1.411593564 1.111701131 0.099913945 0.317217236 419.0583844 1088874.064 0.202807397 0.076857408 2.93E-08 7.532476936 -0.299892433 ASPDQNASTHT(ph)PQSSVK ddPTM_HeLa_A485_30min_R1 6 ASPDQNASTHTPQSSVK 17 0 Q14677-2;Q14677;Q14677-3;H0YD52 Q14677-2 CLINT1 Clathrin interactor 1 1 0 ASPDQNASTHT(1)PQSSVK;ASPDQNASTHT(0.999)PQSSVK;ASPDQNASTHT(1)PQSSVK;ASPDQNASTHT(0.992)PQS(0.007)S(0.001)VK;ASPDQNASTHT(1)PQSSVK;ASPDQNASTHT(1)PQSSVK ;;;;; 244.22 2.04E-42 2844920000 2309840 2930170 2767680 1622950 3816680 2482330 3088790 2738220 2675010 3148310 TRUE FALSE FALSE 2823655.939 3272827.892 3791560.005 1711607.649 3436677.938 2612300.96 2428844.783 2066667.252 3211859.97 2363494.257 1.194695494 1.384741208 1.604217989 0.724185237 1.454066549 1.105270703 1.027649962 0.874411793 1.358945536 1 21.17248993 -5.242454416 24.9956867 1.087291148 1.393570497 0.303988924 0.219313845 1047.99596 1379794.304 0.057713342 0.099748146 5.72E-06 5.242454416 0.306279349 ASPDQNASTHT(ph)PQSSVK ddPTM_HeLa_A486_30min_R1 3 ASPDQNASTHTPQSSVK 17 0 Q14677-2;Q14677;Q14677-3;H0YD52 Q14677-2 CLINT1 Clathrin interactor 1 1 0 ASPDQNASTHT(0.768)PQS(0.202)S(0.03)VK;ASPDQNASTHT(1)PQSSVK;ASPDQNASTHT(1)PQSSVK ;; 272.54 3.29E-59 915300000 2187590 2268800 1688820 113013.6 2446150 1867720 2095480 2001130 1893800 1273760 TRUE FALSE FALSE 2034251.238 2089012.025 2342776.332 263101.3722 2139331.058 1637299.696 1571168.74 1545516.383 2057956.109 954802.2052 2.130547276 2.187900294 2.453677127 0.275555891 2.240601295 1.714805105 1.645543686 1.618677015 2.155374273 1 19.86484237 ASPDSRHS(ph)PATISSSTR ddPTM_HeLa_A486_30min_R1 2 ASPDSRHSPATISSSTR 17 1 O15119-3;O15119-2;O15119 O15119-3 TBX3 T-box transcription factor TBX3 1 0 ASPDS(0.004)RHS(0.979)PAT(0.002)IS(0.003)S(0.003)S(0.004)T(0.004)R;ASPDS(0.013)RHS(0.941)PAT(0.008)IS(0.009)S(0.009)S(0.009)T(0.009)R ; 89.483 0.00017986 0 143355 135464 168372 7348 225152 99693 121407 124630 131807 57567 TRUE FALSE FALSE 133306.5548 124729.3393 233570.1476 17106.51535 196911.3367 87393.89126 91029.68449 96254.46965 143232.1369 43151.8485 3.089243205 2.890475 5.412749527 0.396426015 4.56321904 2.025264138 2.109519931 2.230598989 3.319258429 1 15.39713474 -8.661489019 0.152690961 3.83E-09 4.034087027 0.176787832 1.302945053 20.96892459 1.380859192 22.68242014 10.36027623 2.18E-09 8.661489019 4.034087023 ASPEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 2 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ASPEPQRENAS(1)PAPGTTAEEAMSR;ASPEPQRENAS(1)PAPGTTAEEAMSR ; 174.14 8.17E-15 1242020000 113010 150180 165540 90373 247140 195770 236560 275660 166240 133250 TRUE FALSE FALSE 138148.6846 167742.2446 226780.1347 95309.84815 222533.8738 206020.2145 186017.0235 208053.9528 199602.8432 100033.2273 1.381027968 1.676865269 2.267048068 0.952781898 2.224599564 2.059517823 1.859552356 2.079848451 1.995365426 1 16.61011976 -10.56596424 6.684797753 0.998944164 1.841471585 0.295780542 0.385376859 0.005955945 0.000386712 0.366478047 0.088796135 2.72E-11 10.56596424 0.842527422 ASPHATPSTLHFPTS(ph)PIIQQPGPYFSHPAIR ddPTM_HeLa_A485_30min_R1 1 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIR 31 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;B1AKN6 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 ASPHATPSTLHFPT(0.132)S(0.868)PIIQQPGPYFSHPAIR 247.77 5.85E-51 884500000 26170 46584 44203 13953 58048 35880 40656 46629 45518 26156 TRUE FALSE FALSE 31991.42621 52031.59357 60555.52914 14715.21706 52268.5373 37758.62132 31969.51347 35193.16464 54653.04508 19635.79057 1.62924055 2.649834413 3.083936394 0.749407925 2.661901344 1.922948872 1.62812459 1.792296802 2.783338155 1 14.26119806 -10.74970227 2.751786066 0.776037687 2.09386875 0.196662641 0.666925186 83882661.3 66491978.7 127617344 0.169854704 1.78E-11 10.74970227 1.317831063 ASPITNDGEDEFVPS(ph)DGLDKDEYTFSPGK ddPTM_HeLa_A485_30min_R1 3 ASPITNDGEDEFVPSDGLDKDEYTFSPGK 29 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 ASPITNDGEDEFVPS(0.993)DGLDKDEY(0.002)T(0.003)FS(0.001)PGK;ASPIT(0.001)NDGEDEFVPS(0.998)DGLDKDEYTFSPGK;ASPITNDGEDEFVPS(0.999)DGLDKDEYTFSPGK ;; 80.729 5.83E-06 0 231843 189289 114838 399920 262756 235356 408670 419440 194193 557920 TRUE FALSE FALSE 283415.6755 211424.702 157321.355 421766.6169 236595.09 247678.8762 321354.316 316571.6823 233165.7539 418840.8118 0.676666809 0.504785341 0.375611332 1.006985483 0.564880698 0.591343702 0.767246904 0.755828165 0.556693014 1 18.6760425 -14 0.158964102 2.282653284 0.55111768 0.298616698 0.163762773 170.8241169 1.564230537 69.35838126 0.714370549 1.00E-14 14 -1.731535604 ASPITNDGEDEFVPSDGLDKDEYT(ph)FSPGK ddPTM_HeLa_A486_30min_R1 1 ASPITNDGEDEFVPSDGLDKDEYTFSPGK 29 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 ASPITNDGEDEFVPS(0.278)DGLDKDEY(0.008)T(0.357)FS(0.357)PGK 83.744 8.68E-06 0 113410 114390 52900 60769 98590 127530 183510 159160 97146 194220 TRUE FALSE FALSE 105460.5446 105325.3198 73384.29671 141473.3031 86223.92288 111796.6452 137593.857 122922.7424 105566.6935 145586.0478 0.724386342 0.723457511 0.504061329 0.97175042 0.592254025 0.767907687 0.945103319 0.844330513 0.725115456 1 17.15151258 -11.19977895 0.065501012 1.662213393 0.341468567 0.300128577 0.128900244 223.1200456 1.9335067 32.96066892 10.76152169 6.31E-12 11.19977895 -1.320744827 ASPRPWT(ph)PEDPWSLYGPSPGGR ddPTM_HeLa_A485_30min_R1 4 ASPRPWTPEDPWSLYGPSPGGR 22 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 AS(0.033)PRPWT(0.966)PEDPWSLYGPSPGGR;AS(0.008)PRPWT(0.992)PEDPWSLYGPSPGGR;AS(0.003)PRPWT(0.996)PEDPWSLYGPSPGGR;ASPRPWT(1)PEDPWSLYGPSPGGR ;;; 178.2 1.65E-15 1447130000 262808 384286 487500 418357 518090 451704 462967 385924 428894 581053 TRUE FALSE FALSE 321268.7329 429224.9049 667846.5366 441210.7836 466507.1405 475354.523 364050.3184 291275.5339 514969.0918 436207.1806 0.736504916 0.983993212 1.531030589 1.011470703 1.069462313 1.089744837 0.834581214 0.667745848 1.180560785 1 18.73465399 -6.751272779 24.43550654 0.893034122 1.084662614 0.092617823 0.220111623 318.4237516 765335.3427 0.086822925 0.066429635 1.77E-07 6.751272779 0.191628491 ASPRPWT(ph)PEDPWSLYGPSPGGR ddPTM_HeLa_A486_30min_R1 3 ASPRPWTPEDPWSLYGPSPGGR 22 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 AS(0.036)PRPWT(0.964)PEDPWSLYGPSPGGR;ASPRPWT(1)PEDPWSLYGPSPGGR;AS(0.001)PRPWT(0.999)PEDPWSLYGPSPGGR ;; 158.61 2.02E-10 1133416000 194662 318502 327416 91003 384775 330696 349338 335349 335793 352203 TRUE FALSE FALSE 181017.199 293262.7416 454200.2437 211859.583 336512.9316 289898.0898 261929.9375 258997.3533 364899.8076 264009.0763 0.685647636 1.110805528 1.720396321 0.802470832 1.274626374 1.098061074 0.992124745 0.981016853 1.382148723 1 18.010228 -6.506633642 23.98227767 1.081219532 1.139409994 0 0.281284291 3611.920065 5332213.242 0.101375294 0.086965335 3.11E-07 6.506633642 0.058190461 ASPS(ph)CSSPTRDSSGVPVSK ddPTM_HeLa_A486_30min_R1 1 ASPSCSSPTRDSSGVPVSK 19 1 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 AS(0.002)PS(0.381)CS(0.308)S(0.308)PT(0.001)RDSSGVPVSK 146.06 1.04E-08 356410000 166080 179360 132340 134960 324650 249480 374990 370030 174070 377300 TRUE FALSE FALSE 154438.6496 165146.8604 183585.5922 314193.7005 283929.3698 218701.6941 281163.5358 285782.2467 189158.5278 282821.6242 0.546063796 0.583925861 0.649121483 1.11092531 1.003916764 0.77328491 0.994137335 1.010468162 0.668826255 1 18.10953291 -5.106793005 5.620616491 0.935296233 0.576646487 0.631274948 0.121520341 0.142561764 6.246892934 0.033194419 0.058913631 7.82E-06 5.106793005 -0.358649745 ASPS(ph)PQPSSQPLQIHR ddPTM_HeLa_A485_30min_R1 3 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 ASPS(1)PQPSSQPLQIHR;ASPS(1)PQPSSQPLQIHR;ASPS(1)PQPSSQPLQIHR ;; 266.28 3.58E-51 19598200000 3325790 4966700 5184600 3784200 5807100 4795500 5413500 5917300 4772200 5227100 TRUE FALSE FALSE 4065600.512 5547512.36 7102599.289 3990921.264 5228924.734 5046584.965 4256861.501 4466072.897 5729936.767 3924080.168 1.03606459 1.413710251 1.810003615 1.017033571 1.332522403 1.286055521 1.084804927 1.138119688 1.460198702 1 21.90392308 -5.323859674 24.99986538 1.199904593 1.419318677 0.187823933 0.219723047 382.2772176 153104.2944 0.061798582 0.091662126 4.74E-06 5.323859674 0.219414085 ASPS(ph)PQPSSQPLQIHR ddPTM_HeLa_A486_30min_R1 6 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 AS(0.016)PS(0.984)PQPSSQPLQIHR;ASPS(1)PQPSSQPLQIHR;AS(0.012)PS(0.988)PQPSSQPLQIHR;ASPS(1)PQPSSQPLQIHR;AS(0.03)PS(0.94)PQPS(0.015)S(0.015)QPLQIHR;AS(0.039)PS(0.961)PQPSSQPLQIHR ;;;;; 266.45 3.45E-51 22851470000 6429507 7524120 6621950 1701693 8783514 6395119 7147000 7418999 6435571 6963471 TRUE FALSE FALSE 5978831.761 6927881.329 9186146.382 3961627.303 7681803.771 5606154.239 5358745.007 5729854.883 6993411.476 5219772.537 1.145419981 1.327238166 1.759874845 0.758965506 1.471674046 1.074022709 1.026624239 1.097721183 1.339792381 1 22.31555551 -5.260483196 24.99999037 1.124018441 1.402483685 0.263172455 0.229829497 125.5523927 3282603.326 0.061873421 0.099717078 5.49E-06 5.260483196 0.278465244 ASPSCS(ph)SPTRDSSGVPVSK ddPTM_HeLa_A485_30min_R1 3 ASPSCSSPTRDSSGVPVSK 19 1 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 ASPS(0.002)CS(0.478)S(0.478)PT(0.042)RDSSGVPVSK;ASPSCS(0.484)S(0.484)PT(0.032)RDSSGVPVSK;ASPS(0.013)CS(0.626)S(0.356)PT(0.005)RDSSGVPVSK ;; 263.09 3.87E-57 1229590000 623263 1188370 899840 562508 1832210 1642960 2033090 3415800 1020330 988020 TRUE FALSE FALSE 761905.7041 1327339.534 1232728.261 593236.3877 1649788.739 1728982.845 1598703.713 2578069.694 1225100.872 741724.7972 1.027208079 1.789531022 1.661975258 0.799806599 2.224259922 2.331030123 2.155386632 3.475776601 1.651691944 1 19.50052448 -5.850063657 9.055016412 2.277777829 1.378838816 0.262085906 0.647059083 0.348898681 32.22208565 0.193379675 0.219566124 1.41E-06 5.850063657 -0.898939014 ASPSCS(ph)SPTRDSSGVPVSK ddPTM_HeLa_A486_30min_R1 1 ASPSCSSPTRDSSGVPVSK 19 1 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 ASPS(0.089)CS(0.566)S(0.344)PT(0.001)RDSSGVPVSK 154.65 3.95E-09 400900000 356710 307660 322640 182140 698860 340930 532410 615780 225420 424340 TRUE FALSE FALSE 331706.4711 283279.9011 447574.8486 424031.1248 611202.4622 298869.5229 399195.3867 475580.3364 244959.5871 318082.502 1.042831558 0.890586245 1.407103018 1.333085354 1.921521801 0.939597498 1.255005806 1.495147747 0.770113369 1 18.27904148 -7.769676958 24.99966157 0.885056553 1.286717899 0.236788529 0.28764297 304.5761309 924300.9289 0.268837845 0.074126106 1.70E-08 7.769676958 0.401661346 ASPSCSS(ph)PTR ddPTM_HeLa_A485_30min_R1 7 ASPSCSSPTR 10 0 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 ASPSCS(0.006)S(0.993)PTR;ASPSCS(0.02)S(0.98)PTR;ASPSCS(0.001)S(0.999)PTR;ASPSCS(0.011)S(0.989)PTR;ASPSCS(0.161)S(0.838)PT(0.001)R;ASPSCS(0.002)S(0.998)PT(0.001)R;ASPS(0.002)CS(0.106)S(0.89)PT(0.001)R ;;;;;; 223.07 4.80E-17 8790578000 3751875 4618371 4649039 3919947 5693480 4004202 4693106 4410570 4644609 4926177 TRUE FALSE FALSE 4586466.65 5158449.314 6368911.989 4134083.779 5126617.14 4213855.825 3690385.564 3328870.792 5576739.423 3698171.733 1.240198395 1.394864729 1.722178538 1.11787231 1.386257186 1.139442981 0.99789459 0.900139591 1.507972 1 21.81838079 -6.034131714 1.448640279 1.092120244 1.415835969 0.277670436 0.209293188 0.514092358 2.205009937 0.086693194 0.094328237 9.24E-07 6.034131714 0.323715725 ASPSCSS(ph)PTR ddPTM_HeLa_A486_30min_R1 7 ASPSCSSPTR 10 0 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 ASPSCS(0.001)S(0.998)PTR;ASPS(0.002)CS(0.243)S(0.754)PT(0.002)R;ASPSCS(0.005)S(0.991)PT(0.003)R;ASPSCS(0.011)S(0.989)PTR;ASPS(0.032)CS(0.133)S(0.824)PT(0.011)R;ASPS(0.05)CS(0.119)S(0.83)PT(0.002)R;ASPSCS(0.031)S(0.968)PTR ;;;;;; 189.17 7.52E-10 9204710000 3294254 4075447 3743690 1255283 4607147 3622652 3913247 4016615 3346926 3504139 TRUE FALSE FALSE 3063343.806 3752493.737 5193347.027 2922362.262 4029275.663 3175726.029 2934111.21 3102119.447 3637040.24 2626679.786 1.166241817 1.428607231 1.977152698 1.112568908 1.533980535 1.209026713 1.117041836 1.181004043 1.384653074 1 21.3248089 -6.3192276 6.831241234 1.184296886 1.453918937 0.238833643 0.236480869 0.389095193 38.57576332 0.083889424 0.074124558 4.79E-07 6.3192276 0.269622051 ASPTGTPSRAS(ph)PTGTPSR ddPTM_HeLa_A485_30min_R1 1 ASPTGTPSRASPTGTPSR 18 1 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 ASPTGTPS(0.007)RAS(0.964)PT(0.027)GT(0.002)PSR 91.276 0.00034615 115110000 59805 85630 82416 64871 95697 75459 86943 106480 75395 92128 TRUE FALSE FALSE 73108.41593 95643.68362 112905.108 68414.73847 86169.07067 79409.91656 68366.91779 80365.61305 90526.08494 69162.18509 1.057057637 1.382889848 1.632468781 0.989192843 1.245898616 1.148169574 0.988501414 1.161987767 1.308895675 1 16.07769583 -5.284246472 24.99990944 1.128020634 1.360013955 0.303570145 0.164266961 969.4817492 1062691.811 0.046562721 0.069116108 5.20E-06 5.284246472 0.231993321 ASQEPS(ph)PKPGTEVIPAAPR ddPTM_HeLa_A485_30min_R1 3 ASQEPSPKPGTEVIPAAPR 19 1 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 FLYWCH2 FLYWCH family member 2 1 0 ASQEPS(1)PKPGTEVIPAAPR;AS(0.001)QEPS(0.95)PKPGT(0.049)EVIPAAPR;AS(0.001)QEPS(0.991)PKPGT(0.008)EVIPAAPR ;; 222.07 4.73E-35 2600230000 992680 945050 713960 1675260 1369880 1065970 1582300 1570140 992670 1996670 TRUE FALSE FALSE 1213498.241 1055565.377 978083.5144 1766775.212 1233489.937 1121782.541 1244228.679 1185060.703 1191889.764 1498936.915 0.809572591 0.704209341 0.652518131 1.178685503 0.82290984 0.748385425 0.830074079 0.790600786 0.795156722 1 20.51550824 -11.51657676 1.860916178 2.68866064 0.815403512 0.148869078 0.132925439 4585870.272 281219.8911 32621766.78 0.037773938 3.04E-12 11.51657676 -1.873257128 ASQEPS(ph)PKPGTEVIPAAPR ddPTM_HeLa_A486_30min_R1 4 ASQEPSPKPGTEVIPAAPR 19 1 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 FLYWCH2 FLYWCH family member 2 1 0 AS(0.001)QEPS(0.992)PKPGT(0.008)EVIPAAPR;ASQEPS(1)PKPGTEVIPAAPR;ASQEPS(1)PKPGTEVIPAAPR;ASQEPS(0.999)PKPGT(0.001)EVIPAAPR ;;; 248.7 1.99E-46 3663110000 2509770 2529980 1561240 1419560 2630910 2891780 3856320 3713550 1965860 4147250 TRUE FALSE FALSE 2333848.083 2329495.171 2165793.939 3304807.421 2300916.736 2535021.585 2891427.948 2868055.731 2136262.328 3108751.606 0.750734822 0.74933461 0.69667642 1.06306577 0.740141712 0.815446812 0.930092949 0.922574749 0.687176912 1 21.56790392 -1 0.039841974 1.347105046 1.47E-09 0.187886498 0.114258315 1368.2249 4.160777192 38.65847109 124.8441174 0.1 1 -1.347105044 ASQFTIVLEDEGSQGTDAPTPGNAENEPPEKET(ph)LSPPRR ddPTM_HeLa_A485_30min_R1 1 ASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLSPPRR 39 2 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 ASQFTIVLEDEGS(0.004)QGT(0.012)DAPT(0.014)PGNAENEPPEKET(0.522)LS(0.448)PPRR 49.644 0.02072 78488000 7766 9835.4 4871 11973 9035.6 10984 8559.7 11030 7494 11191 TRUE FALSE FALSE 9493.519908 10985.56447 6672.985599 12627.05467 8135.983938 11559.10526 6730.850169 8324.875206 8997.977061 8401.289655 1.130007451 1.307604537 0.794281101 1.50299004 0.968420834 1.375872721 0.801168683 0.990904438 1.071023311 1 13.03639509 -6.767991525 24.99974006 0.965016189 1.17321939 0.217298791 0.198810996 248.1160495 946676.3889 0.076725872 0.053098806 1.71E-07 6.767991525 0.208203201 ASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLS(ph)PPRR ddPTM_HeLa_A486_30min_R1 1 ASQFTIVLEDEGSQGTDAPTPGNAENEPPEKETLSPPRR 39 2 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 ASQFTIVLEDEGSQGT(0.001)DAPT(0.213)PGNAENEPPEKET(0.181)LS(0.605)PPRR 72.885 0.00050648 81973000 47463 43530 37936 28370 52415 53181 65718 63451 39715 62850 TRUE FALSE FALSE 44136.0888 40080.52427 52625.83516 66046.79374 45840.62195 46620.06892 49274.66131 49004.59243 43157.52818 47111.95092 0.936834241 0.85075068 1.117037909 1.401911669 0.973014725 0.989559295 1.04590577 1.040173278 0.916063278 1 15.52380546 -7.678369336 7.49974844 0.958712778 1.04853931 0.05749946 0.139252355 0.726748129 54.7514279 0.104217194 0.038620141 2.10E-08 7.678369336 0.089826532 ASQGLLSSIENS(ph)ESDSSEAKEEGSR ddPTM_HeLa_A486_30min_R1 1 ASQGLLSSIENSESDSSEAKEEGSR 25 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 AS(0.001)QGLLS(0.031)S(0.111)IENS(0.421)ES(0.421)DS(0.008)S(0.008)EAKEEGSR 47.281 0.023515 38714000 17188 23149 10921 4707.7 18153 17327 22044 23676 16529 17507 TRUE FALSE FALSE 15983.20996 21314.58893 15149.90367 10959.76351 15876.08147 15189.37091 16528.35804 18285.49164 17961.74703 13123.13325 1.217941604 1.624199688 1.15444257 0.835148383 1.209778272 1.157450025 1.259482604 1.393378494 1.368708729 1 13.6798246 -4.794432097 24.9360922 1.178228648 1.421070961 0.234034141 0.179766423 245.2913407 185392.0441 0.04945303 0.102955581 1.61E-05 4.794432097 0.242842313 ASQGLLSSIENSES(ph)DSSEAKEEGSR ddPTM_HeLa_A486_30min_R1 2 ASQGLLSSIENSESDSSEAKEEGSR 25 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 ASQGLLS(0.004)S(0.004)IENS(0.04)ES(0.947)DS(0.003)S(0.003)EAKEEGSR;ASQGLLS(0.001)S(0.004)IENS(0.063)ES(0.924)DS(0.004)S(0.004)EAKEEGSR ; 72.292 0.00025459 44886000 44701 44785 30251 27332.6 36390 42273 50000 51836 32406 56364 TRUE FALSE FALSE 41567.69074 41236.0735 41964.99735 63631.67411 31825.62688 37057.78706 37489.47115 40034.07437 35214.97817 42250.08753 0.98384863 0.975999718 0.993252317 1.506072007 0.753267715 0.877105569 0.887322923 0.947550093 0.833488881 1 15.36666671 ASQPDLVDT(ph)PTSSKPQPK ddPTM_HeLa_A485_30min_R1 1 ASQPDLVDTPTSSKPQPK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ASQPDLVDT(0.905)PT(0.086)S(0.009)S(0.001)KPQPK 116.98 3.04E-06 0 231080 203040 109370 269950 298800 202420 304460 366250 188100 419210 TRUE FALSE FALSE 282482.9488 226783.7618 149830.5143 284696.685 269050.4228 213018.3982 239409.6338 276426.6132 225849.9446 314708.662 0.897601442 0.720614934 0.476092756 0.904635682 0.854919026 0.676874913 0.760734173 0.878357181 0.717647691 1 18.26365736 -14 0.231548212 2.298243762 0.736408799 0.240168268 0.124215899 241.181857 2.41406879 146.5825089 0.21800774 1.00E-14 14 -1.561834963 ASQPDLVDT(ph)PTSSKPQPK ddPTM_HeLa_A486_30min_R1 1 ASQPDLVDTPTSSKPQPK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ASQPDLVDT(0.973)PT(0.023)S(0.004)S(0.001)KPQPK 180.13 1.27E-17 433720000 612070 559210 289860 208930 462470 612040 707370 659140 424390 732240 TRUE FALSE FALSE 569167.0537 514896.163 402101.5547 486399.5987 404462.7002 536532.7276 530378.5442 509068.2109 461176.4669 548882.3379 1.036956401 0.938081129 0.732582426 0.886163691 0.736884159 0.977500441 0.966288233 0.927463275 0.840210069 1 19.06613739 ASQS(ph)RPNS(ph)SALETLGGEK ddPTM_HeLa_A485_30min_R1 4 ASQSRPNSSALETLGGEK 18 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 2 0 AS(0.003)QS(0.997)RPNS(0.963)S(0.037)ALETLGGEK;AS(0.077)QS(0.924)RPNS(0.957)S(0.041)ALETLGGEK;AS(0.003)QS(0.997)RPNS(0.978)S(0.022)ALETLGGEK;AS(0.003)QS(0.997)RPNS(0.977)S(0.023)ALETLGGEK ;;; 220.53 2.43E-34 1479370000 2245200 2085170 1592610 2818580 2784910 2286030 3476030 3287990 2012580 3531230 TRUE FALSE FALSE 2744636.994 2329012.493 2181782.713 2972551.888 2507634.582 2405722.996 2733347.794 2481605.297 2416486.346 2650959.348 1.035337262 0.878554586 0.823016284 1.121311758 0.945934755 0.90749147 1.031078728 0.936115938 0.911551641 1 21.33808312 -5.202080732 24.9999748 0.974213342 0.908928093 0.131617429 0.077748776 555.8180336 234091.5101 0.021068381 0.036491492 6.28E-06 5.202080732 -0.065285249 ASQS(ph)RPNS(ph)SALETLGGEK ddPTM_HeLa_A486_30min_R1 4 ASQSRPNSSALETLGGEK 18 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 2 0 AS(0.147)QS(0.854)RPNS(0.976)S(0.024)ALETLGGEK;AS(0.03)QS(0.97)RPNS(0.97)S(0.03)ALETLGGEK;AS(0.021)QS(0.977)RPNS(0.667)S(0.335)ALETLGGEK;AS(0.001)QS(0.999)RPNS(0.978)S(0.022)ALETLGGEK ;;; 217.93 2.90E-34 1528540000 1642637 1819214 1119851 800353 1852340 1821015 2404520 2303140 1392271 1958033 TRUE FALSE FALSE 1527496.629 1675052.857 1553487.298 1863262.232 1620002.245 1596356.684 1802883.664 1778765.299 1512954.171 1467728.792 1.040721308 1.141255024 1.058429395 1.269486735 1.103747677 1.08763737 1.22834932 1.21191688 1.030813172 1 20.48515398 -3.177863234 1.252637466 1.138899021 5.13E-10 0.063971589 0.08470432 46.26823686 7.275533196 0.02390394 125.4935231 0.000663952 3.177863234 -1.138899021 ASQSRPNS(ph)SALETLGGEK ddPTM_HeLa_A485_30min_R1 1 ASQSRPNSSALETLGGEK 18 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 ASQSRPNS(0.5)S(0.5)ALETLGGEK 232.44 1.20E-35 682220000 295030 296150 250290 350350 382890 327410 470940 446680 295690 504310 TRUE FALSE FALSE 360658.4057 330782.1663 342882.6864 369488.7334 344768.1272 344552.6813 370319.8218 337131.0296 355032.2708 378594.7981 0.952623775 0.873710278 0.905671943 0.975947729 0.910652045 0.910082978 0.978142921 0.890479825 0.937763204 1 18.53029506 -14 0.291466741 1.587965317 0.920778685 0.31063379 0.033077366 308.673751 2.907592676 110.4249483 0.034960452 1.00E-14 14 -0.667186632 ASQSRPNS(ph)SALETLGGEK ddPTM_HeLa_A486_30min_R1 2 ASQSRPNSSALETLGGEK 18 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 ASQSRPNS(0.99)S(0.01)ALETLGGEK;ASQSRPNS(0.906)S(0.094)ALETLGGEK ; 315.67 1.35E-89 1050660000 981210 966610 678610 426410 995460 1015950 1255020 1219890 813200 1167730 TRUE FALSE FALSE 912432.246 890012.3033 941385.9658 992704.0296 870600.1245 890612.4184 941000.7218 942147.677 883688.8308 875322.8074 1.042395146 1.016781804 1.075472909 1.134100496 0.994604639 1.017467397 1.075032792 1.076343115 1.009557644 1 19.73945564 -7.875925673 6.265909006 1.000820536 1.053572701 0.215559696 0.037708827 0.343595171 16.45713644 0.0381489 0.009908008 1.33E-08 7.875925673 0.052752165 ASQVKPGDS(ph)LPR ddPTM_HeLa_A485_30min_R1 2 ASQVKPGDSLPR 12 1 P08913 P08913 ADRA2A Alpha-2A adrenergic receptor 1 0 ASQVKPGDS(1)LPR;ASQVKPGDS(1)LPR ; 74.772 0.0045568 649900000 722530 776280 564150 985290 625880 944080 1157440 1073540 755690 1873390 TRUE FALSE FALSE 883254.3058 867059.1933 772852.5612 1039113.898 563565.1896 993510.569 910143.4886 810252.6318 907350.0514 1406388.35 0.628030164 0.616514772 0.549529979 0.738852748 0.400718045 0.706426905 0.647149479 0.576122969 0.645163231 1 20.42356359 -8.140465184 7.00777104 0.999999848 0.608397358 0.641990801 0.087304271 3.462994338 172.8569213 0.079067935 0.020474287 7.24E-09 8.140465184 -0.39160249 ASRVPS(ph)S(ph)DEEVVEEPQSR ddPTM_HeLa_A485_30min_R1 2 ASRVPSSDEEVVEEPQSR 18 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 AS(0.144)RVPS(0.881)S(0.975)DEEVVEEPQSR;AS(0.01)RVPS(0.99)S(0.996)DEEVVEEPQS(0.004)R ; 171.79 9.03E-12 2134200000 863760 2389210 1833810 636600 2472180 2627180 2917400 5096200 1702310 1253530 TRUE FALSE FALSE 1055900.432 2668607.326 2512212.63 671375.846 2226041.079 2764735.082 2294073.657 3846348.959 2043948.002 941048.0405 1.12204732 2.835782246 2.669590204 0.713434189 2.365491434 2.937931926 2.437785913 4.08730351 2.171991136 1 19.84390885 -5.995129007 24.99212211 2.707419566 1.912928802 0.093151415 0.933828621 276.877568 1420587.826 0.283727733 0.320609948 1.01E-06 5.995129007 -0.794490765 ASS(ph)AAAAAALSR ddPTM_HeLa_A485_30min_R1 1 ASSAAAAAALSR 12 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 AS(0.011)S(0.989)AAAAAALSR 115.69 0.00026256 114100000 126400 139890 148560 157990 191850 157400 212650 252520 141050 210060 TRUE FALSE FALSE 154517.2439 156248.9186 203518.5261 166620.5936 172748.7404 165641.2206 167215.5903 190589.0741 169357.4412 157695.9079 0.979843079 0.99082418 1.290575823 1.056594276 1.095454807 1.05038376 1.06036734 1.208586048 1.073949499 1 17.2667857 -4.569079273 24.99999879 1.108684092 0.982584801 0.25908284 0.080444418 131.7975229 71317.67735 0.019804194 0.052397019 2.70E-05 4.569079273 -0.126099291 ASS(ph)ASVPAVGASAEGTR ddPTM_HeLa_A485_30min_R1 1 ASSASVPAVGASAEGTR 17 0 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 ASS(1)ASVPAVGASAEGTR 243.99 1.65E-42 729160000 261660 251900 299350 300780 383120 274890 346120 286790 309420 417480 TRUE FALSE FALSE 319865.3643 281357.5138 410092.022 317210.8498 344975.2276 289282.8153 272168.6345 216454.3028 371517.7558 313409.9192 1.02059745 0.897730086 1.308484502 1.012127665 1.100715729 0.923017421 0.868411042 0.690642796 1.185405225 1 18.25769132 -6.299179906 7.351046265 0.909562102 1.068718029 0.15699149 0.150770626 0.410843045 68.40887669 0.052215896 0.046445975 5.02E-07 6.299179906 0.159155927 ASS(ph)ASVPAVGASAEGTR ddPTM_HeLa_A486_30min_R1 2 ASSASVPAVGASAEGTR 17 0 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 AS(0.001)S(0.999)ASVPAVGASAEGTR;ASS(1)ASVPAVGASAEGTR ; 285.71 5.75E-60 934590000 673850 837650 655970 223610 895210 755680 758510 786840 720370 693360 TRUE FALSE FALSE 626616.5948 771271.5633 909979.1515 520575.3806 782924.4143 662451.8848 568722.7753 607693.7086 782812.2516 519738.143 1.205639038 1.483961825 1.75084158 1.001610884 1.506382444 1.274587778 1.094248677 1.169230538 1.506166638 1 18.98742542 -5.89506712 1.049280488 1.212518053 1.436903808 0.130891527 0.222615616 1.080332899 2.552898461 0.104778962 0.137827082 1.27E-06 5.89506712 0.224385755 ASS(ph)FADMMGILK ddPTM_HeLa_A485_30min_R1 7 ASSFADMMGILK 12 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 0 ASS(1)FADMMGILK;AS(0.029)S(0.971)FADMMGILK;AS(0.04)S(0.96)FADMMGILK;AS(0.002)S(0.998)FADMMGILK;ASS(1)FADMMGILK;AS(0.163)S(0.837)FADMMGILK;AS(0.085)S(0.915)FADMMGILK ;;;;;; 296.28 8.45E-50 3632267000 1211851 1200439 987233 1375986 1626820 1264609 1987435 2058744 1161061 1605929 TRUE FALSE FALSE 1481423.074 1340819.899 1352451.569 1451152.631 1464848.089 1330821.972 1562803.276 1553833.806 1394075.293 1205600.455 1.228784435 1.112159416 1.121807447 1.203676247 1.215036111 1.103866514 1.296286236 1.2888464 1.156332753 1 20.20132044 -5.279176629 23.32846598 1.195673673 1.150041328 0 0.087143622 1103.610501 1451493.566 0.024032433 0.035756109 5.26E-06 5.279176629 -0.045632345 ASS(ph)FADMMGILK ddPTM_HeLa_A486_30min_R1 4 ASSFADMMGILK 12 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 0 ASS(1)FADMMGILK;ASS(1)FADMMGILK;ASS(1)FADMMGILK;AS(0.23)S(0.77)FADMMGILK ;;; 339.87 1.44E-73 3136365000 1273417 1405520 925158 586742 1429670 1339240 1676840 1698010 1077825 1472390 TRUE FALSE FALSE 1184157.044 1294141.476 1283403.954 1365965.028 1250347.457 1174018.185 1257276.896 1311410.19 1171251.739 1103693.96 1.072903438 1.172554642 1.162825928 1.237630247 1.132875147 1.063717142 1.139153553 1.18820093 1.061210608 1 20.07390876 -5.99772691 24.97801316 1.104488522 1.165226795 0.219717586 0.060405206 127.7399084 1403639.087 0.018721073 0.021095368 1.01E-06 5.99772691 0.060738274 ASS(ph)FSGISILTR ddPTM_HeLa_A485_30min_R1 1 ASSFSGISILTR 12 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 0 AS(0.001)S(0.998)FS(0.001)GISILTR 90.861 0.0020867 160760000 196020 250130 250170 270240 371610 321180 391100 476970 391120 435430 TRUE FALSE FALSE 239623.9727 279380.5277 342718.2934 285002.5269 334611.2036 337996.4882 307538.29 359992.3596 469614.1964 326885.3145 0.73305212 0.854674454 1.048435883 0.871873144 1.023634861 1.033991046 0.94081403 1.101280307 1.436632897 1 18.31842504 -3.643491759 0.308547639 1.157394226 0.277639385 0.448522147 0.132233357 10.833404 0.624519665 0.144347111 3.842086364 0.000227252 3.643491759 -0.879754841 ASS(ph)FSGISILTR ddPTM_HeLa_A486_30min_R1 1 ASSFSGISILTR 12 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 0 AS(0.001)S(0.989)FS(0.01)GISILTR 208.08 2.39E-17 172120000 299290 347040 235930 144070 374220 382800 426610 535940 350030 433850 TRUE FALSE FALSE 278311.3165 319539.2865 327288.4144 335402.2409 327281.8381 335574.028 319867.6658 413918.1615 380370.8822 325211.1361 0.855786551 0.982559485 1.006387476 1.031336887 1.006367254 1.03186512 0.983569227 1.27276749 1.169612107 1 18.31101713 -7.238780525 24.81688124 1.165892347 0.990466609 0.468934198 0.078163767 542.848851 594550.7864 0.035879762 0.020695872 5.77E-08 7.238780525 -0.175425738 ASS(ph)FSGISVLTR ddPTM_HeLa_A485_30min_R1 4 ASSFSGISVLTR 12 0 Q15032-2;Q15032-4;Q15032;Q15032-3;H7C1X4;H7BZ47;H7C207 Q15032-2 R3HDM1 R3H domain-containing protein 1 1 0 AS(0.005)S(0.995)FSGISVLTR;AS(0.008)S(0.987)FS(0.004)GIS(0.001)VLTR;AS(0.06)S(0.94)FSGISVLTR;ASS(1)FSGISVLTR ;;; 263.19 1.51E-33 1438120000 1332590 1726830 1765730 1470160 2196300 1713440 2220160 2514440 1913750 2164010 TRUE FALSE FALSE 1629020.048 1928767.747 2418947.005 1550471.118 1977628.66 1803153.069 1745804.679 1897769.648 2297822.071 1624562.133 1.002744072 1.187253912 1.488983989 0.95439324 1.21733027 1.109931736 1.074630908 1.168173017 1.414425478 1 20.63161949 -10.1404082 5.598234445 0.999997256 1.178067557 0.103989727 0.158230244 5.32E-06 8.17E-07 0.150451583 0.036489307 7.24E-11 10.1404082 0.178070301 ASS(ph)FSGISVLTR ddPTM_HeLa_A486_30min_R1 4 ASSFSGISVLTR 12 0 Q15032-2;Q15032-4;Q15032;Q15032-3;H7C1X4;H7BZ47;H7C207 Q15032-2 R3HDM1 R3H domain-containing protein 1 1 0 AS(0.007)S(0.989)FS(0.005)GISVLTR;AS(0.013)S(0.98)FS(0.007)GISVLTR;AS(0.006)S(0.993)FSGISVLTR;AS(0.007)S(0.992)FSGISVLTR ;;; 215.14 9.89E-19 1444480000 1054710 1112310 876600 456708 1286930 1289140 1447610 1574030 1041280 1499340 TRUE FALSE FALSE 980780.2755 1024166.505 1216042.996 1063239.305 1125511.239 1130099.014 1085402.667 1215657.73 1131538.989 1123895.505 0.872661445 0.911264882 1.081989376 0.946030392 1.00143762 1.005519649 0.965750519 1.081646581 1.006800885 1 20.10007648 -4.600650525 6.82432832 1.009364145 0.88202505 0.582653015 0.040874308 0.126518216 8.847290156 0.010167303 0.027468944 2.51E-05 4.600650525 -0.127339095 ASS(ph)HS(ph)SQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 4 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.148)S(0.794)HS(0.697)S(0.35)QT(0.011)QGGGSVTK;AS(0.007)S(0.69)HS(0.693)S(0.604)QT(0.007)QGGGSVTK;AS(0.17)S(0.722)HS(0.482)S(0.482)QT(0.144)QGGGSVTK;AS(0.114)S(0.821)HS(0.492)S(0.492)QT(0.081)QGGGSVTK ;;; 139.7 1.62E-07 4193031000 1674695 2019843 1765903 1656583 2182437 2106210 2412697 2746540 2094820 2178654 TRUE FALSE FALSE 2047225.125 2256046.069 2419184.005 1747077.935 1965145.909 2216487.899 1897204.576 2072946.759 2515231.159 1635555.653 1.25170007 1.379375911 1.479120567 1.068186174 1.20151577 1.355189531 1.159975555 1.267426611 1.537845046 1 20.64134942 -10.88226961 2.618535043 0.855243641 1.294464583 0.304155312 0.135910962 15992706.57 8917284.741 14305499.2 0.034246191 1.31E-11 10.88226961 0.439220942 ASS(ph)HS(ph)SQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 4 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.024)S(0.916)HS(0.697)S(0.362)QTQGGGSVTK;AS(0.146)S(0.854)HS(0.853)S(0.146)QT(0.001)QGGGSVTK;AS(0.14)S(0.743)HS(0.615)S(0.5)QT(0.001)QGGGSVTK;AS(0.153)S(0.795)HS(0.567)S(0.472)QT(0.014)QGGGSVTK ;;; 142.04 7.56E-08 209613000 436910 840750 842580 156639 957950 475773 305570 472049 530624 413379 TRUE FALSE FALSE 406284.8652 774125.908 1168849.541 364663.5081 837794.9785 417076.9646 229113.154 364573.7475 576618.9156 309866.2078 1.311162221 2.498258567 3.772110388 1.176841808 2.703731344 1.345990476 0.739393804 1.176552132 1.860864144 1 18.24128591 -6.351690933 5.864544628 1.190715464 2.321966437 0.349500417 0.728876782 0.268194997 14.02480659 0.260773686 0.229378704 4.45E-07 6.351690933 1.131250973 ASS(ph)HS(ph)SQTQGGGSVTKK ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.469)S(0.53)HS(0.539)S(0.422)QT(0.039)QGGGS(0.001)VT(0.001)KK 50.202 0.0081532 0 488450 388630 201010 91931 418180 395040 500050 476390 320880 564830 TRUE FALSE FALSE 454212.1774 357833.5434 278846.4552 214020.0139 365727.965 346303.9813 374932.201 367926.3965 348694.1368 423392.8916 1.072791222 0.845157183 0.658599756 0.505487972 0.863802799 0.817925828 0.885542031 0.868995214 0.82357107 1 18.69163752 -5.944179641 24.9999631 0.868025892 0.757447385 0.11343723 0.142337737 206.0809781 92295.03194 0.047213862 0.053535483 1.14E-06 5.944179641 -0.110578507 ASS(ph)HSS(ph)QTQGGGS(ph)VTK ddPTM_HeLa_A485_30min_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 3 0 AS(0.004)S(0.996)HSS(0.991)QT(0.009)QGGGS(0.977)VT(0.023)K;AS(0.101)S(0.898)HS(0.004)S(0.996)QT(0.001)QGGGS(0.951)VT(0.049)K ; 279.15 1.00E-58 1039630000 1617250 1477150 1158470 2027780 2230770 1568850 2472900 2337000 1569430 2769000 TRUE FALSE FALSE 1977001.683 1649889.843 1587036.261 2138552.487 2008666.706 1650992.56 1944544.713 1763847.086 1884400.205 2078739.26 0.951058039 0.793697351 0.763460955 1.0287738 0.96629084 0.794227825 0.935444262 0.848517715 0.906511096 1 20.98727738 -14 0.304854325 1.981311487 0.879522476 0.144046782 0.082049038 589.2056242 5.411336718 370.378085 0.083461841 1.00E-14 14 -1.101789011 ASS(ph)HSS(ph)QTQGGGS(ph)VTK ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 3 0 AS(0.106)S(0.893)HS(0.002)S(0.995)QT(0.003)QGGGS(0.985)VT(0.015)K 157.59 1.01E-08 691720000 1294100 1377500 767220 310950 1274000 1409100 1690000 1639800 1086400 1478800 TRUE FALSE FALSE 1203390.273 1268341.883 1064308.131 723907.3145 1114203.04 1235259.569 1267144.125 1266453.337 1180570.027 1108498.855 1.085603533 1.144197739 0.960134624 0.653051928 1.005145865 1.114353491 1.143117216 1.142494042 1.065016912 1 20.08017585 -6.159128178 5.050962424 1.10454109 0.958336423 0.192090768 0.126604261 0.388628246 15.34490795 0.046725381 0.046747045 6.93E-07 6.159128178 -0.146204667 ASS(ph)HSS(ph)QTQGGGSVTK ddPTM_HeLa_A485_30min_R1 6 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.001)S(0.999)HS(0.001)S(0.94)QT(0.059)QGGGSVTK;ASS(1)HS(0.002)S(0.931)QT(0.067)QGGGSVTK;AS(0.114)S(0.87)HS(0.096)S(0.919)QT(0.001)QGGGSVTK;AS(0.122)S(0.687)HS(0.585)S(0.605)QTQGGGSVTK;AS(0.103)S(0.895)HS(0.012)S(0.988)QT(0.002)QGGGSVTK;AS(0.022)S(0.978)HS(0.001)S(0.998)QT(0.001)QGGGSVTK ;;;;; 289.02 1.08E-59 31094570000 16641680 16281200 14032600 17005700 21961150 17273380 25570980 24355000 18018020 24514250 TRUE FALSE FALSE 20343564.3 18185144.71 19223842.69 17934678.33 19774620.8 18177787.47 20107531.23 18381898.06 21634071.34 18403298.63 1.105430321 0.988145934 1.044586793 0.974536071 1.07451502 0.987746156 1.092604735 0.998837134 1.175554002 1 24.13346104 -6.774341808 24.99418993 1.066652053 1.027575662 0.085555577 0.060069013 581.0005519 1125486.241 0.023126918 0.015706503 1.68E-07 6.774341808 -0.039076391 ASS(ph)HSS(ph)QTQGGGSVTK ddPTM_HeLa_A486_30min_R1 10 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.01)S(0.99)HSS(0.988)QT(0.012)QGGGSVTK;ASS(1)HS(0.001)S(0.93)QT(0.068)QGGGSVTK;AS(0.001)S(0.999)HSS(0.572)QT(0.428)QGGGSVTK;AS(0.001)S(0.999)HS(0.001)S(0.992)QT(0.007)QGGGSVTK;AS(0.094)S(0.906)HS(0.003)S(0.997)QTQGGGSVTK;AS(0.004)S(0.996)HS(0.001)S(0.999)QTQGGGSVTK;AS(0.014)S(0.986)HS(0.119)S(0.881)QTQGGGSVTK;AS(0.026)S(0.946)HS(0.033)S(0.995)QT(0.001)QGGGSVTK;AS(0.439)S(0.561)HS(0.001)S(0.987)QT(0.013)QGGGSVTK;AS(0.465)S(0.533)HS(0.119)S(0.503)QT(0.38)QGGGS(0.001)VTK ;;;;;;;;; 335.14 1.89E-90 58441490000 11218140 12310280 7713044 1912933 11974960 10893800 13407570 12956370 9758240 10444590 TRUE FALSE FALSE 10431806.32 11334768.58 10699741.2 4453404.698 10472948.85 9549833.716 10052854.18 10006487.39 10604092.1 7829196.681 1.332423586 1.447756269 1.366646111 0.568820133 1.3376786 1.21977185 1.284021156 1.278098864 1.354429136 1 22.90043286 -9.324845605 0.016674726 2.45E-05 2.313790507 0.048614456 0.238489373 6724.43055 28.66136717 2133.78564 1844.868772 4.73E-10 9.324845605 2.313766009 ASS(ph)HSS(ph)QTQGGGSVTKK ddPTM_HeLa_A485_30min_R1 2 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.002)S(0.998)HS(0.024)S(0.972)QT(0.004)QGGGSVTKK;AS(0.076)S(0.923)HS(0.002)S(0.997)QT(0.001)QGGGSVTKK ; 219.3 1.92E-34 2898900000 1069270 1080530 708890 943530 1466630 1307900 2068980 2346730 1043850 1443270 TRUE FALSE FALSE 1307125.423 1206888.584 971137.9104 995072.6548 1320607.168 1376379.622 1626925.521 1771190.788 1253341.12 1083489.35 1.206403572 1.113890583 0.896305912 0.918396341 1.218846468 1.27032132 1.501561156 1.634709919 1.156763673 1 20.04725354 -6.099849483 2.550855795 1.368556304 1.032179193 0.306357045 0.187231136 0.301818567 3.847552196 0.067766285 0.069426835 7.95E-07 6.099849483 -0.336377111 ASS(ph)HSSQT(ph)QGGGSVTK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.001)S(0.999)HSS(0.385)QT(0.615)QGGGSVTK 272.21 5.33E-58 17519000000 3087300 3125500 2558300 3135600 3994100 3110200 4627000 4663400 3054100 4310300 TRUE FALSE FALSE 3774059.234 3491000.037 3504721.63 3306889.888 3596433.38 3273045.263 3638403.651 3519693.838 3667029.856 3235821.535 1.166337263 1.078860499 1.083101028 1.021963001 1.111443675 1.01150364 1.12441419 1.087728047 1.133260848 1 21.62570061 -9.930254688 0.006950408 2.22E-07 2.103974059 0.164276354 0.048155822 25403.81413 34.62722786 5453.047936 5033.372546 1.17E-10 9.930254688 2.103973837 ASS(ph)HSSQTQGGGS(ph)VTK ddPTM_HeLa_A485_30min_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.153)S(0.845)HS(0.002)S(0.001)QTQGGGS(0.973)VT(0.027)K;AS(0.021)S(0.977)HS(0.001)SQTQGGGS(0.999)VT(0.001)K ; 227.08 4.06E-33 286930000 670050 1021660 870850 286320 1543050 788670 1065300 1178840 993410 813370 TRUE FALSE FALSE 819100.3109 1141134.25 1193013.654 301960.9366 1389418.524 829963.5417 837689.9523 889727.6417 1192778.275 610611.828 1.341441933 1.868837447 1.953800433 0.494521925 2.275453014 1.359232664 1.37188622 1.457108429 1.953414952 1 19.21989601 -10.53473416 6.394474807 0.999407995 1.5590568 0.11568618 0.467597603 0.0037612 0.000273666 0.431499334 0.104551239 2.92E-11 10.53473416 0.559648804 ASS(ph)HSSQTQGGGS(ph)VTK ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.131)S(0.857)HS(0.012)S(0.001)QT(0.02)QGGGS(0.977)VT(0.003)K 100.28 0.0010399 514170000 1030900 1010600 776640 46791 1092800 723420 843110 790720 913050 280990 TRUE FALSE FALSE 958639.2336 930516.3755 1077375.807 108931.8127 955730.834 634171.7956 632154.9605 610690.3173 992193.9092 210628.2751 4.55133212 4.417813208 5.115057828 0.517175639 4.537523909 3.010857851 3.001282522 2.899374821 4.710639675 1 17.68433959 -1.000000003 0.068871092 9.71E-13 11.28987147 0.241287179 1.319294511 431.0516759 2.200141258 64.07385716 473.3746686 0.099999999 1.000000003 11.28987147 ASS(ph)HSSQTQGGGS(ph)VTKK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.13)S(0.821)HS(0.037)S(0.011)QT(0.001)QGGGS(0.997)VT(0.002)KK 86.856 0.00047606 179100000 173400 211520 145600 106800 334450 209860 324280 338060 214800 258200 TRUE FALSE FALSE 211972.2318 236255.424 199463.4989 112634.2136 301150.9837 220847.9451 254994.9289 255150.2549 257908.3897 193835.4918 1.093567694 1.218845021 1.029034967 0.581081475 1.553642116 1.139357622 1.315522387 1.316323716 1.330552972 1 17.56447323 -5.782246465 24.99999197 1.286869894 1.001104455 0.33424955 0.202972604 291.7152081 350498.0429 0.062895446 0.071391426 1.65E-06 5.782246465 -0.28576544 ASS(ph)HSSQTQGGGSVT(ph)K ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.22)S(0.771)HS(0.01)SQTQGGGS(0.016)VT(0.984)K 282.27 8.00E-69 0 669940 671180 543990 11402 765020 489710 535320 540130 606090 178260 TRUE FALSE FALSE 622980.6656 617993.2524 754637.4966 26544.43223 669064.0581 429294.5592 401377.274 417154.19 658626.3692 133622.5357 4.662242504 4.624917863 5.647531627 0.198652361 5.007119903 3.212740702 3.003814228 3.121885 4.929006665 1 17.02780382 -8.092010049 0.117109139 7.79E-32 5.87490578 0.217670196 1.510014491 21.27126245 1.616452888 43.15485107 30.92224221 8.09E-09 8.092010049 5.87490578 ASS(ph)HSSQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 8 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.006)S(0.824)HS(0.158)S(0.011)QTQGGGSVTK;AS(0.091)S(0.683)HS(0.208)S(0.018)QTQGGGSVTK;AS(0.03)S(0.909)HS(0.03)S(0.03)QTQGGGSVTK;ASS(0.989)HS(0.01)SQTQGGGSVTK;AS(0.045)S(0.906)HS(0.025)S(0.025)QTQGGGSVTK;AS(0.018)S(0.682)HS(0.255)S(0.045)QTQGGGSVTK;AS(0.093)S(0.6)HS(0.152)S(0.152)QT(0.004)QGGGSVTK;AS(0.106)S(0.583)HS(0.186)S(0.125)QTQGGGSVTK ;;;;;;; 355.72 1.38E-104 51320921000 6199004 11911814 11000154 2805815.4 15641917 9146566 10307460 11968776 12411054 7483155.6 TRUE FALSE FALSE 7577951.053 13304797.03 15069568.72 2959089.991 14084552.82 9625466.052 8105186.967 9033414.92 14901838.7 5617742.626 1.34893169 2.368352898 2.682495394 0.526740043 2.507155233 1.713404599 1.442783607 1.608015091 2.652638202 1 22.4215591 -10.69039886 2.917222055 0.8919402 1.864720503 0.137867023 0.654140107 55507515.12 51316420.31 44212348.59 0.158858489 2.04E-11 10.69039886 0.972780303 ASS(ph)HSSQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 7 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.002)S(0.915)HS(0.076)S(0.007)QTQGGGSVTK;AS(0.019)S(0.774)HS(0.103)S(0.103)QT(0.002)QGGGSVTK;AS(0.096)S(0.649)HS(0.127)S(0.127)QT(0.001)QGGGSVTK;AS(0.132)S(0.734)HS(0.132)S(0.002)QTQGGGSVTK;AS(0.025)S(0.604)HS(0.184)S(0.184)QT(0.003)QGGGSVTK;AS(0.122)S(0.877)HSSQTQGGGSVTK;AS(0.107)S(0.883)HS(0.008)S(0.001)QTQGGGSVTK ;;;;;; 211.57 9.62E-26 9855430000 2238503 2454530 3102187 96128.4 3359760 1619071 1673641 1715748 2658426 501182 TRUE FALSE FALSE 2081595.499 2260024.104 4303436.886 223791.7733 2938347.572 1419326.482 1254878.32 1325109.635 2888860.506 375682.7651 5.540833099 6.015777975 11.45497554 0.595693479 7.821353135 3.777992002 3.340260551 3.527203689 7.689627459 1 18.51915541 -5.265116345 24.9996314 4.19680016 7.505053653 0.283982509 2.675072883 440.546097 2995269.728 0.719644381 1.115868438 5.43E-06 5.265116345 3.308253492 ASS(ph)HSSQTQGGGSVTKK ddPTM_HeLa_A485_30min_R1 3 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.023)S(0.716)HS(0.251)S(0.008)QT(0.002)QGGGSVTKK;AS(0.167)S(0.694)HS(0.102)S(0.032)QT(0.005)QGGGSVTKK;AS(0.009)S(0.964)HS(0.026)S(0.001)QTQGGGSVTKK ;; 191.46 2.93E-18 1410001000 357695 786997 476977 114593 667117 590608 663470 1049647 637966 317067 TRUE FALSE FALSE 437263.0187 879029.4532 653430.641 120852.9254 600696.4891 621531.3216 521714.2144 792219.4275 765999.9244 238028.0321 1.837023206 3.692966099 2.745183562 0.5077256 2.523637589 2.611168593 2.191818375 3.328261048 3.218108043 1 17.86077196 -5.975855219 24.99909643 2.594609986 2.238638728 0.011822319 0.957146856 1112.327165 1151678.837 0.306327348 0.34732843 1.06E-06 5.975855219 -0.355971258 ASS(ph)HSSQTQGGGSVTKK ddPTM_HeLa_A486_30min_R1 4 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.083)S(0.62)HS(0.268)S(0.024)QT(0.005)QGGGSVTKK;AS(0.025)S(0.883)HS(0.067)S(0.023)QT(0.002)QGGGSVTKK;AS(0.029)S(0.913)HS(0.057)S(0.001)QTQGGGSVTKK;AS(0.061)S(0.732)HS(0.174)S(0.033)QT(0.001)QGGGSVTKK ;;; 216.19 3.07E-34 1709935000 1220240 602978 749898 26558.09 939671 732470 670482 578880 952968 244554.9 TRUE FALSE FALSE 1134707.477 555195.8273 1040278.589 61828.57569 821808.7011 642105.2986 502720.312 447081.6609 1035572.034 183316.7613 6.189873035 3.028614642 5.674759806 0.337277264 4.482998147 3.502709159 2.742358683 2.438847696 5.649085367 1 17.48397918 -1 0.070927663 4.36E-14 11.71285766 0.181955807 1.709514667 485.7448207 2.546891257 72.48262655 566.9475392 0.1 1 11.71285766 ASS(ph)LEDLVLK ddPTM_HeLa_A485_30min_R1 11 ASSLEDLVLK 10 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 AS(0.038)S(0.962)LEDLVLK;ASS(1)LEDLVLK;AS(0.003)S(0.997)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;AS(0.003)S(0.997)LEDLVLK;AS(0.204)S(0.796)LEDLVLK;AS(0.002)S(0.998)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK ;;;;;;;;;; 287.83 9.65E-35 24313089000 6559813 6395908 4872461 8611502 8188538 7120201 10546739 10690515 6086264 10767440 TRUE FALSE FALSE 8019020.771 7143853.804 6674987.084 9081926.549 7373258.405 7493003.714 8293342.054 8068649.434 7307721.358 8083315.368 0.992046012 0.883777692 0.825773433 1.123539802 0.912157706 0.926971592 1.025982741 0.998185654 0.904050012 1 22.9465157 -5.217415931 24.9999814 0.980665287 0.898856962 0.223895817 0.071306819 721.2495033 409581.127 0.019103268 0.033087544 6.06E-06 5.217415931 -0.081808325 ASS(ph)LEDLVLK ddPTM_HeLa_A486_30min_R1 14 ASSLEDLVLK 10 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 AS(0.022)S(0.978)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;AS(0.003)S(0.997)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK;AS(0.141)S(0.859)LEDLVLK;ASS(1)LEDLVLK;AS(0.002)S(0.998)LEDLVLK;ASS(1)LEDLVLK;AS(0.123)S(0.877)LEDLVLK;AS(0.23)S(0.77)LEDLVLK;ASS(1)LEDLVLK;ASS(1)LEDLVLK ;;;;;;;;;;;;; 307.05 4.78E-44 29590541400 6243113 6795380 3717853 3004404 6468351 6926496 8293195 8230787 5176144 8181029 TRUE FALSE FALSE 5805503.018 6256889.34 5157505.249 6994404.346 5657030.103 6071975.347 6218149.895 6356816.477 5624816.33 6132446.089 0.946686352 1.020292596 0.841019256 1.140557005 0.922475309 0.990139213 1.013975468 1.036587421 0.917222304 1 22.54803122 -5.235302124 24.99765723 1.001085363 0.944428768 0.153486808 0.071180334 1658.496128 1586183.406 0.018338385 0.031750643 5.82E-06 5.235302124 -0.056656595 ASS(ph)LGEIDESSELR ddPTM_HeLa_A485_30min_R1 3 ASSLGEIDESSELR 14 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 ASS(1)LGEIDESSELR;ASS(1)LGEIDESSELR;AS(0.004)S(0.996)LGEIDESSELR ;; 370.89 2.10E-109 7329770000 2882619 3604400 3442260 3037880 3982680 3459390 4119490 4119080 2985000 3899840 TRUE FALSE FALSE 3523847.652 4025903.226 4715695.218 3203831.692 3586150.395 3640518.311 3239327.308 3108869.172 3584062.12 2927681.659 1.203630743 1.375116455 1.610726769 1.094323791 1.224911316 1.243481613 1.106447929 1.06188771 1.22419803 1 21.48132726 -5.289185142 24.9993932 1.145936639 1.394353894 0.505947524 0.117483829 596.8397278 537761.1881 0.033359936 0.04949232 5.14E-06 5.289185142 0.248417255 ASS(ph)LGEIDESSELR ddPTM_HeLa_A486_30min_R1 5 ASSLGEIDESSELR 14 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 ASS(1)LGEIDESSELR;ASS(1)LGEIDESSELR;ASS(1)LGEIDESSELR;ASS(1)LGEIDESSELR;AS(0.158)S(0.842)LGEIDESSELR ;;;; 388 3.22E-125 6196960000 3615983 4086622 3166615 1237498 4303929 3372327 3741996 3790056 3099621 3628864 TRUE FALSE FALSE 3362521.265 3762783.189 4392813.133 2880957.884 3764090.092 2956283.582 2805709.022 2927142.985 3368298.644 2720172.834 1.236142506 1.383288276 1.614902214 1.059108395 1.383768724 1.086799906 1.03144513 1.076087132 1.238266408 1 21.37526689 -5.940154001 1.22402013 1.086442843 1.381743578 0.405606246 0.145773168 0.455170566 1.433330155 0.06321288 0.076523587 1.15E-06 5.940154001 0.295300735 ASS(ph)LNFLNK ddPTM_HeLa_A485_30min_R1 5 ASSLNFLNK 9 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 AS(0.001)S(0.999)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK ;;;; 248.69 2.05E-16 12815100000 16072330 16575270 14078080 18730550 21893760 17464010 24189940 25799960 15690740 22460850 TRUE FALSE FALSE 19647564.36 18513603.64 19286147.63 19753752.52 19713940.38 18378398.56 19021561.71 19472479.36 18839727.59 16861773.46 1.165213399 1.097963016 1.143779311 1.171510966 1.169149878 1.089944578 1.128087846 1.154829853 1.117304039 1 24.00725295 -8.130176381 5.678241794 1.000000963 1.138637853 0.709685093 0.026729912 1.046599117 45.35920081 0.026519694 0.006889559 7.41E-09 8.130176381 0.13863689 ASS(ph)LNFLNK ddPTM_HeLa_A486_30min_R1 7 ASSLNFLNK 9 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 AS(0.001)S(0.999)LNFLNK;ASS(1)LNFLNK;AS(0.133)S(0.867)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK;ASS(1)LNFLNK ;;;;;; 232.56 5.00E-13 16231645000 6460070.6 7048754.8 4890147.7 2835099.1 7503761 7033346 8715025 8592534 5648826.5 7277027 TRUE FALSE FALSE 6007253.011 6490185.799 6783743.852 6600253.983 6562569.326 6165643.28 6534433.567 6636201.582 6138471.329 5454812.074 1.101275888 1.189809238 1.243625584 1.209987419 1.203078903 1.130312685 1.197920933 1.21657749 1.125331404 1 22.37909806 -8.071255922 4.094620093 1.000076975 1.188045906 0.674081487 0.03954232 0.188834665 8.083926317 0.039247588 0.010299527 8.49E-09 8.071255922 0.187968931 ASS(ph)LNVLNVGGK ddPTM_HeLa_A485_30min_R1 6 ASSLNVLNVGGK 12 0 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 ASS(1)LNVLNVGGK;ASS(1)LNVLNVGGK;AS(0.011)S(0.989)LNVLNVGGK;AS(0.001)S(0.999)LNVLNVGGK;AS(0.011)S(0.989)LNVLNVGGK;ASS(1)LNVLNVGGK ;;;;; 268.2 5.37E-34 10750020000 9098280 8475050 7535240 9895130 11376550 9392280 12631770 12957680 8246830 12732380 TRUE FALSE FALSE 11122161 9466133.374 10322838.84 10435675.9 10243860.74 9884045.258 9932889.147 9779788.663 9901893.137 9558431.988 1.163596813 0.990343749 1.079971993 1.091776968 1.071709329 1.034065553 1.039175584 1.023158262 1.035932792 1 23.18834254 -6.295743564 3.19112512 1.027439996 1.07578756 0.301248721 0.040331486 0.377148712 7.844294506 0.014349127 0.013027846 5.06E-07 6.295743564 0.048347563 ASS(ph)LNVLNVGGK ddPTM_HeLa_A486_30min_R1 6 ASSLNVLNVGGK 12 0 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 AS(0.001)S(0.999)LNVLNVGGK;ASS(1)LNVLNVGGK;AS(0.007)S(0.993)LNVLNVGGK;AS(0.001)S(0.999)LNVLNVGGK;ASS(1)LNVLNVGGK;AS(0.001)S(0.999)LNVLNVGGK ;;;;; 279.68 7.79E-41 9983400000 11948770 13266780 8684990 4771720 13799220 13345350 15370980 14925240 10569320 13356170 TRUE FALSE FALSE 11111222.93 12215472.04 12048050.72 11108805.31 12068393.15 11698936.4 11524998.23 11527088.67 11485477.17 10011698.1 1.10982401 1.220119895 1.203397326 1.10958253 1.205429193 1.168526686 1.151153192 1.151361992 1.147205704 1 23.25518336 -9.690846515 0.46036166 0.956809449 1.173305962 0.662220082 0.035271397 6.634557095 1.123014689 0.455845469 0.018753886 2.04E-10 9.690846515 0.216496513 ASS(ph)LPGS(ph)LQR ddPTM_HeLa_A485_30min_R1 1 ASSLPGSLQR 10 0 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 AS(0.023)S(0.977)LPGS(1)LQR 78.324 0.018145 143410000 179510 200960 195920 166020 290450 209610 243690 294540 187200 223440 TRUE FALSE FALSE 219441.3802 224460.5239 268398.9609 175089.2522 261531.7782 220584.8555 191623.6407 222303.6032 224769.3229 167740.5201 1.308219267 1.338141337 1.60008423 1.043810119 1.55914491 1.315036196 1.142381344 1.325282663 1.33998227 1 17.35587171 -13.08612281 0.201239317 1.19E-12 1.388128115 0.298786998 0.154767116 117.1345948 1.617008488 47.76527357 0.36493242 8.20E-14 13.08612281 1.388128115 ASS(ph)LPGSLQR ddPTM_HeLa_A485_30min_R1 4 ASSLPGSLQR 10 0 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASS(1)LPGSLQR;ASS(1)LPGSLQR;AS(0.013)S(0.987)LPGSLQR;AS(0.023)S(0.977)LPGSLQR ;;; 186.24 1.03E-09 1662670000 1184670 1527890 1555450 1387960 1759200 1465770 1730010 1871350 1343820 1886690 TRUE FALSE FALSE 1448195.754 1706563.445 2130875.683 1463780.74 1584047.871 1542515.451 1360379.231 1412398.478 1613512.348 1416372.905 1.022467847 1.204882866 1.504459507 1.033471295 1.118383348 1.089060265 0.960466856 0.997193941 1.139186116 1 20.43376972 ASS(ph)LPGSLQR ddPTM_HeLa_A486_30min_R1 3 ASSLPGSLQR 10 0 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASS(1)LPGSLQR;AS(0.003)S(0.997)LPGSLQR;AS(0.002)S(0.997)LPGS(0.001)LQR ;; 186.24 1.03E-09 1170380000 861120 946430 793510 308449 1053150 828120 996830 1005780 782610 1025090 TRUE FALSE FALSE 800759.9348 871431.44 1100778.323 718084.8601 921054.1068 725954.9741 747412.5906 776785.85 850447.2649 768400.7918 1.042112324 1.134084516 1.432557507 0.934518636 1.198663662 0.944760836 0.972685867 1.01091235 1.106775623 1 19.55149948 -5.305420968 24.99821088 1.026332242 1.196035593 0.32601686 0.117700902 538.5324998 306089.4028 0.033058808 0.049034482 4.95E-06 5.305420968 0.169703351 ASS(ph)LSESS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 2 0 AS(0.034)S(0.963)LS(0.008)ES(0.258)S(0.736)PPK 90.861 0.00083625 0 228090 231530 116840 170630 222250 344730 467730 461020 196740 434640 TRUE FALSE FALSE 212102.0689 213182.7196 162083.5771 397235.2632 194373.3326 302200.7176 350699.0069 356055.81 213793.5816 325803.315 0.651012617 0.654329498 0.497489036 1.219248684 0.596597161 0.927555687 1.076413255 1.092855087 0.656204439 1 18.31364176 -5.240320039 24.93822718 0.933335194 0.60628228 0.413754771 0.183978642 799.5263051 944098.6599 0.048973391 0.084710943 5.75E-06 5.240320039 -0.327052915 ASS(ph)PAESS(ph)PEDSGYMR ddPTM_HeLa_A485_30min_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 AS(0.024)S(0.976)PAES(0.024)S(0.976)PEDSGYMR 215.93 6.76E-25 0 184430 236720 223700 231840 277220 251430 316630 349580 218820 319280 TRUE FALSE FALSE 225455.8172 264402.3448 306455.9389 244504.8322 249619.0034 264594.486 248979.4139 263844.9569 262735.1669 239689.3719 0.940616663 1.103104166 1.278554558 1.02009042 1.041427083 1.103905792 1.038758673 1.100778707 1.096148589 1 17.87080641 ASS(ph)PCHS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ASSPCHSPR 9 0 Q86Y91;A0A494BYR6;Q86Y91-6 Q86Y91 KIF18B Kinesin-like protein KIF18B 2 0 AS(0.364)S(0.636)PCHS(1)PR 67.252 0.035392 165870000 162530 201220 107340 214540 118650 194860 154320 232450 195080 252360 TRUE FALSE FALSE 198684.2378 224750.9286 147049.5328 226259.777 106836.7894 205062.5683 121348.2713 175441.273 234230.7666 189451.2963 1.048735172 1.186325631 0.776186469 1.194289938 0.563927466 1.082402561 0.640524893 0.926049472 1.236364021 1 17.53146749 -4.748471625 24.99987287 0.916658161 1.117530436 0.113606405 0.21063309 462.0558252 890758.3942 0.050959617 0.133005023 1.78E-05 4.748471625 0.200872275 ASS(ph)PCPEFEQFQIVPAVETPYLAR ddPTM_HeLa_A486_30min_R1 1 ASSPCPEFEQFQIVPAVETPYLAR 24 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 AS(0.195)S(0.805)PCPEFEQFQIVPAVETPYLAR 103.67 0.00037903 76949000 58657 82715 82659 24821 97995 68503 82626 80490 73552 84262 TRUE FALSE FALSE 54545.44721 76160.36216 114666.7785 57784.54238 85703.55333 60051.79635 61952.10087 62164.18408 79927.54658 63162.24675 0.863576741 1.205789314 1.81543223 0.914858881 1.35687943 0.950754595 0.980840677 0.98419843 1.265432291 1 15.94677487 -6.266557357 24.94381532 1.031794817 1.244760568 0.124654831 0.25708334 885.6407585 4316392.105 0.089990171 0.081717721 5.41E-07 6.266557357 0.212965751 ASS(ph)PEKAEEDR ddPTM_HeLa_A485_30min_R1 2 ASSPEKAEEDR 11 1 Q8N3D4;H0YDZ9 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AS(0.013)S(0.987)PEKAEEDR;AS(0.067)S(0.933)PEKAEEDR ; 158.81 6.99E-08 2888200000 1755770 1387290 984460 3004800 1872930 1514870 2584800 2365770 1340750 4165900 TRUE FALSE FALSE 2146334.979 1549521.498 1348652.721 3168944.615 1686454.513 1594186.251 2032536.364 1785561.198 1609826.227 3127417.798 0.686296209 0.495463541 0.431235226 1.013278308 0.53924823 0.509745213 0.649908805 0.570937851 0.514746136 1 21.57654053 -10.15833518 4.469518403 1.000067514 0.601246933 0.373504241 0.154946039 210582464.8 19.71739631 149542.6096 0.037459789 6.94E-11 10.15833518 -0.398820581 ASS(ph)PEKAEEDR ddPTM_HeLa_A486_30min_R1 2 ASSPEKAEEDR 11 1 Q8N3D4;H0YDZ9 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AS(0.029)S(0.971)PEKAEEDR;AS(0.124)S(0.876)PEKAEEDR ; 155.09 1.76E-07 3965700000 2781100 2695200 1334480 1978990 2455100 3287700 4211900 3863000 2264700 4949200 TRUE FALSE FALSE 2586159.252 2481622.536 1851226.395 4607188.733 2147158.465 2882097.001 3158038.071 2983479.229 2461006.019 3709888.106 0.69709899 0.668921128 0.498997906 1.241867302 0.578766368 0.776868983 0.851248873 0.804196553 0.663363948 1 21.82294424 -14 0.111005444 1.676445827 0.636333445 0.125370815 0.191577929 379.6269449 2.790243536 60.28438882 2.330481035 1.00E-14 14 -1.040112382 ASS(ph)PELPVSVENIK ddPTM_HeLa_A486_30min_R1 1 ASSPELPVSVENIK 14 0 Q969R5 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 AS(0.076)S(0.924)PELPVSVENIK 131.69 1.76E-05 75116000 98774 111040 53410 30902 71579 103770 93691 89003 95478 125980 TRUE FALSE FALSE 91850.45267 102240.786 74091.78237 71941.4177 62600.89437 90967.91246 70248.52084 68738.95982 103754.1099 94433.78801 0.972643951 1.08267166 0.784589753 0.761818616 0.662907797 0.963298353 0.743891803 0.727906412 1.098696898 1 16.52701552 -4.764009705 24.99484821 0.824612556 1.027657832 0.225206766 0.133690341 78.51123161 763508.2429 0.033675764 0.075698129 1.72E-05 4.764009705 0.203045276 ASS(ph)PFR ddPTM_HeLa_A485_30min_R1 8 ASSPFR 6 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.122)S(0.878)PFR;AS(0.034)S(0.966)PFR;AS(0.026)S(0.974)PFR;AS(0.015)S(0.985)PFR;AS(0.017)S(0.983)PFR;AS(0.017)S(0.983)PFR;AS(0.079)S(0.921)PFR;AS(0.177)S(0.823)PFR ;;;;;;; 118.05 0.0069702 39969140000 17486300 18382610 20295960 21406740 23160880 17242020 20454850 19362740 19791000 26708900 TRUE FALSE FALSE 21376067.11 20532296.33 27804280.19 22576136 20854901.46 18144785.51 16084504.2 14613997.66 23762872.17 20050862.77 1.066092135 1.024010616 1.386687471 1.12594337 1.040099955 0.904937893 0.802185142 0.728846326 1.185129659 1 24.25716098 -6.016779862 2.577309701 0.899889015 1.158229951 0.346435865 0.144829258 0.301733513 4.022343986 0.051589391 0.055606392 9.62E-07 6.016779862 0.258340936 ASS(ph)PFR ddPTM_HeLa_A486_30min_R1 5 ASSPFR 6 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.407)S(0.593)PFR;AS(0.023)S(0.977)PFR;AS(0.031)S(0.969)PFR;AS(0.02)S(0.98)PFR;AS(0.106)S(0.894)PFR ;;;; 130.64 0.0053751 44016200000 19639700 25602200 20683100 6434900 24280800 23149500 22588900 21704100 21504800 20978000 TRUE FALSE FALSE 18263058.45 23573388.43 28692150.23 14980772.4 21235275.65 20293550.06 16936918.3 16762550.23 23368853.38 15724972.26 1.161404812 1.499105248 1.824623266 0.952674012 1.350417369 1.290530102 1.077071426 1.065982817 1.486098226 1 23.90655414 -5.272608731 24.99725447 1.185513493 1.495450542 0.316716918 0.21522184 873.2405535 1954329.967 0.06007754 0.090038465 5.34E-06 5.272608731 0.309937049 ASS(ph)PFRR ddPTM_HeLa_A485_30min_R1 4 ASSPFRR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.381)S(0.619)PFRR;AS(0.204)S(0.796)PFRR;AS(0.222)S(0.778)PFRR;AS(0.065)S(0.935)PFRR ;;; 87.696 0.0043096 61845800000 1314655 1766806 1938908 1538967 2374165 1824520 2074741 2376254 1883484 2044912 TRUE FALSE FALSE 1607095.469 1973418.593 2656190.754 1623036.87 2137784.796 1920049.046 1631455.636 1793473.981 2261481.962 1535153.072 1.046863338 1.285486528 1.730244887 1.05724758 1.392554811 1.25072156 1.062731571 1.168270457 1.473131249 1 20.54995109 -6.523828309 24.96633883 1.185294524 1.312672347 0.071580695 0.212103484 95.45971632 2509711.671 0.08035118 0.062797302 2.99E-07 6.523828309 0.127377822 ASS(ph)PFRR ddPTM_HeLa_A486_30min_R1 5 ASSPFRR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.393)S(0.607)PFRR;AS(0.118)S(0.882)PFRR;AS(0.183)S(0.817)PFRR;AS(0.076)S(0.924)PFRR;AS(0.364)S(0.636)PFRR ;;;; 90.601 0.003923 83926470000 1530800 1820756 1702311 628817 2232392 1600092 1914037 2000165 1524175 1676628 TRUE FALSE FALSE 1423498.825 1676472.663 2361491.409 1463917.755 1952384.579 1402688.918 1435124.698 1544771.093 1656291.716 1256789.436 1.132647033 1.33393281 1.878987316 1.164807495 1.553469916 1.116089042 1.141897487 1.229140737 1.317875269 1 20.26131153 -6.272414403 24.84849181 1.174127856 1.42051452 0.262462644 0.210247992 1002.577083 2269922.988 0.073738295 0.06562645 5.34E-07 6.272414403 0.246386664 ASS(ph)PGYIDSPTYSR ddPTM_HeLa_A485_30min_R1 3 ASSPGYIDSPTYSR 14 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 AS(0.006)S(0.994)PGYIDSPTYSR;ASS(1)PGYIDSPTYSR;ASS(1)PGYIDSPTYSR ;; 296.1 5.43E-58 1574990000 1197900 1253610 1348660 1261170 1401500 1196580 1595140 1249490 1229680 1825210 TRUE FALSE FALSE 1464368.722 1400208.785 1847585.456 1330064.524 1261961.739 1259231.079 1254325.308 943050.6184 1476465.497 1370218.738 1.068711646 1.021887051 1.348387236 0.970695034 0.920992908 0.919000043 0.91541976 0.688248228 1.077539999 1 20.38597479 -5.503924102 22.54172705 0.908088955 1.138160687 0.406795646 0.121806599 198.1894337 235695.159 0.033805873 0.049080337 3.13E-06 5.503924102 0.230071732 ASS(ph)PGYIDSPTYSR ddPTM_HeLa_A486_30min_R1 3 ASSPGYIDSPTYSR 14 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 AS(0.002)S(0.998)PGYIDSPTYSR;ASS(1)PGYIDSPTYSR;ASS(1)PGYIDSPTYSR ;; 366.33 2.96E-109 1943420000 1427360 2001630 1605860 652400 2185490 1849370 2081360 2153090 1708350 1862920 TRUE FALSE FALSE 1327309.435 1843013.549 2227691.998 1518820.17 1911365.465 1621213.532 1560581.714 1662878.409 1856431.153 1396432.706 0.950500106 1.319801191 1.595273434 1.087642937 1.36874871 1.16096789 1.117548813 1.190804541 1.329409677 1 20.41331462 -6.300950846 23.61625806 1.16903407 1.276034301 0.077800665 0.176457235 797.6245642 476742.0279 0.062280225 0.054927241 5.00E-07 6.300950846 0.107000231 ASS(ph)PIKQSHEPVPDTSVEK ddPTM_HeLa_A486_30min_R1 1 ASSPIKQSHEPVPDTSVEK 19 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 AS(0.093)S(0.907)PIKQSHEPVPDTSVEK 170.56 5.86E-13 256150000 321250 295970 125500 137420 278430 342870 431790 452570 206960 495650 TRUE FALSE FALSE 298732.0339 272516.2593 174096.961 319920.7048 243506.7131 300570.1854 323751.575 349529.6905 224899.4594 371536.0139 0.804045968 0.733485447 0.46858704 0.861075893 0.655405409 0.808993406 0.871386791 0.94076934 0.605323444 1 18.50314254 -6.421709762 4.561137732 0.848620074 0.702166609 0.215918217 0.13588888 0.372965244 12.80287868 0.048333237 0.041856325 3.79E-07 6.421709762 -0.146453465 ASS(ph)PPDRIDIFGR ddPTM_HeLa_A485_30min_R1 4 ASSPPDRIDIFGR 13 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 AS(0.016)S(0.984)PPDRIDIFGR;AS(0.212)S(0.788)PPDRIDIFGR;AS(0.001)S(0.999)PPDRIDIFGR;AS(0.151)S(0.849)PPDRIDIFGR ;;; 191.83 2.18E-17 52102670000 781542 1274390 1171870 780935 1513550 1262200 1491290 1841770 1035730 1090480 TRUE FALSE FALSE 955393.3216 1423418.825 1605393.479 823595.5016 1362855.648 1328286.84 1172663.709 1390073.02 1243591.511 818643.4048 1.167044547 1.738753182 1.961041241 1.00604915 1.664773257 1.622546316 1.432447512 1.698020178 1.519088169 1 19.64287564 -8.058298129 21.66688058 0.999999998 1.547335757 0.267829218 0.264718484 6215.500382 2310029.479 0.248415224 0.064140535 8.74E-09 8.058298129 0.547335759 ASS(ph)PPDRIDIFGR ddPTM_HeLa_A486_30min_R1 2 ASSPPDRIDIFGR 13 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 AS(0.081)S(0.919)PPDRIDIFGR;AS(0.165)S(0.835)PPDRIDIFGR ; 211.7 2.31E-22 40212000000 1645570 1710800 1489150 589630 2216100 1494740 1764380 2020890 1252760 1780150 TRUE FALSE FALSE 1530224.041 1575229.977 2065788.761 1372688.438 1938136.074 1310334.176 1322913.462 1560777.463 1361350.245 1334388.853 1.146760209 1.180487962 1.54811602 1.028701967 1.452452236 0.981973263 0.991400265 1.16965715 1.020205049 1 20.34774771 -6.283185729 24.81922769 1.040672774 1.268158969 0.395923281 0.147202955 802.861679 916307.3285 0.050024834 0.04415956 5.21E-07 6.283185729 0.227486196 ASS(ph)PSEHGPR ddPTM_HeLa_A485_30min_R1 4 ASSPSEHGPR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 AS(0.009)S(0.972)PS(0.019)EHGPR;AS(0.009)S(0.848)PS(0.143)EHGPR;AS(0.416)S(0.519)PS(0.065)EHGPR;AS(0.461)S(0.491)PS(0.048)EHGPR ;;; 146.57 4.96E-06 2487490000 715010 1232480 1061417 558671 1107699 906680 1116771 1252450 1056378 997004 TRUE FALSE FALSE 874061.5077 1376607.815 1454079.318 589189.7821 997412.5982 954152.3628 878163.7527 945284.6737 1268383.375 748469.2513 1.167798819 1.839230954 1.942737547 0.787193036 1.332603305 1.274805025 1.173279665 1.262957259 1.694636584 1 19.51358352 -5.246790098 24.99215391 1.234169558 1.668853265 0.317120504 0.289417856 972.736845 1659518.203 0.077657575 0.133773496 5.67E-06 5.246790098 0.434683706 ASS(ph)PSEHGPR ddPTM_HeLa_A486_30min_R1 2 ASSPSEHGPR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 AS(0.009)S(0.974)PS(0.018)EHGPR;AS(0.007)S(0.981)PS(0.012)EHGPR ; 168.29 3.42E-07 1760700000 1279350 1092570 1623940 70347 1401040 1339760 1220260 1036150 1592320 796500 TRUE FALSE FALSE 1189674.172 1005990.774 2252773.059 163771.3711 1225308.499 1174474.033 914938.0414 800241.264 1730343.58 597051.2157 1.992583116 1.684932126 3.773165517 0.274300373 2.052266986 1.967124431 1.532428069 1.340322644 2.898149328 1 19.18749517 -5.262120258 24.99999933 1.628579954 2.403697339 0.198076818 0.823925696 114.278495 4196048.584 0.221953641 0.352764301 5.47E-06 5.262120258 0.775117385 ASS(ph)PTKTSPTTPEASATNSPCTSKPATPAPSEK ddPTM_HeLa_A485_30min_R1 1 ASSPTKTSPTTPEASATNSPCTSKPATPAPSEK 33 2 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 AS(0.132)S(0.867)PT(0.001)KTSPTTPEASATNSPCTSKPATPAPSEK 162.07 1.45E-14 436420000 70356 101240 44078 89908 112510 140140 232200 269180 86489 146130 TRUE FALSE FALSE 86006.44947 113079.1373 60384.28644 94819.44638 101308.1094 147477.5137 182588.5731 203163.1829 103846.549 109702.4803 0.78399731 1.030780134 0.550436838 0.864332749 0.923480573 1.344340741 1.664397856 1.851947033 0.946619882 1 16.74323662 -6.240694579 3.02788294 1.445086353 0.812718119 0.468311127 0.279606668 0.211047951 3.931964273 0.100477529 0.09481073 5.75E-07 6.240694579 -0.632368234 ASS(ph)RPRPDDLEI ddPTM_HeLa_A485_30min_R1 1 ASSRPRPDDLEI 12 2 P17302 P17302 GJA1 Gap junction alpha-1 protein 1 0 AS(0.307)S(0.693)RPRPDDLEI 169.4 1.14E-10 203400000 161160 194850 137840 187070 120470 205330 205550 209410 156570 371750 TRUE FALSE FALSE 197009.486 217636.0125 188832.752 197289.1604 108475.5838 216080.7613 161632.5633 158051.8692 187992.1629 279079.5666 0.705925871 0.779834996 0.676626936 0.706928002 0.388690527 0.774262208 0.579163015 0.566332645 0.673614931 1 18.09031697 -10.21969074 6.160301807 1.000005493 0.647822815 0.477910708 0.109673512 8.31E-06 1.05E-06 0.106694557 0.025876828 6.03E-11 10.21969074 -0.352182678 ASS(ph)RS(ph)PVFTPR ddPTM_HeLa_A486_30min_R1 3 ASSRSPVFTPR 11 1 P52735-3 P52735-3 2 0 AS(0.43)S(0.572)RS(0.998)PVFTPR;AS(0.469)S(0.566)RS(0.965)PVFTPR;AS(0.425)S(0.576)RS(0.999)PVFTPR ;; 112.96 0.00049555 2746370000 853400 973700 731240 347370 1039650 929220 1091720 1049030 832860 1057780 TRUE FALSE FALSE 793581.067 896540.4658 1014395.711 808694.9151 909247.4026 814582.284 818560.109 810188.7692 905052.9754 792905.003 1.000852642 1.130703505 1.279340788 1.019914002 1.146729305 1.027339064 1.032355838 1.021798029 1.141439355 1 19.5967885 -6.265522571 24.91702589 1.045184419 1.120143279 0.165675118 0.079230641 646.908687 3947639.265 0.027540328 0.025161587 5.43E-07 6.265522571 0.074958861 ASS(ph)RSPVFTPR ddPTM_HeLa_A485_30min_R1 1 ASSRSPVFTPR 11 1 P52735-3 P52735-3 1 0 AS(0.094)S(0.629)RS(0.277)PVFTPR 109.99 0.00027342 886930000 95361 143800 157740 125210 183210 155400 186950 224090 141380 157270 TRUE FALSE FALSE 116573.7255 160616.1591 216094.5901 132049.9053 164968.9691 163536.5037 147006.6053 169131.5761 169753.6692 118065.4833 0.987364996 1.360398946 1.830294376 1.118446319 1.397266707 1.385133903 1.245127713 1.432523472 1.437792523 1 16.84922773 -10.79507203 2.67102768 0.896996575 1.363301127 0.202032783 0.211023449 35421044.51 27819562.47 23789929.35 0.051608744 1.60E-11 10.79507203 0.466304552 ASS(ph)TSTPEPTR ddPTM_HeLa_A485_30min_R1 1 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 AS(0.067)S(0.26)T(0.26)S(0.184)T(0.228)PEPTR 97.734 0.0017132 81159000 125050 158660 168600 137280 192850 142730 172870 160600 162600 187540 TRUE FALSE FALSE 152866.9411 177213.9068 230972.156 144779.2588 173649.1769 150203.1221 135934.9123 121212.5982 195232.3285 140789.7294 1.085781908 1.258713314 1.640546913 1.028336793 1.233393782 1.066861359 0.965517249 0.860947732 1.386694394 1 17.10318257 ASS(ph)VTTFTGEPNTCPR ddPTM_HeLa_A485_30min_R1 5 ASSVTTFTGEPNTCPR 16 0 H0YFA4;P52943;P52943-2 H0YFA4 CRIP2 Cysteine-rich protein 2 1 0 ASS(0.999)VT(0.001)TFTGEPNTCPR;AS(0.12)S(0.88)VTTFTGEPNTCPR;AS(0.005)S(0.984)VT(0.011)TFTGEPNTCPR;ASS(0.999)VT(0.001)TFTGEPNTCPR;ASS(0.911)VT(0.088)T(0.001)FTGEPNTCPR ;;;; 328.41 1.53E-90 3554250000 2161720 2166180 2300350 2068950 2792110 1752080 2274150 2289720 1729380 2301990 TRUE FALSE FALSE 2642587.156 2419495.908 3151345.191 2181971.5 2514117.725 1843816.2 1788259.274 1728162.58 2076450.703 1728146.258 1.529145548 1.400052742 1.823540789 1.262608121 1.454806104 1.066932958 1.034784681 1.000009445 1.201548013 1 20.72079389 -6.075464434 1.506640835 1.047326356 1.541722885 0.698329964 0.142294664 0.215825994 0.992500841 0.057229998 0.060059762 8.40E-07 6.075464434 0.494396529 ASS(ph)VTTFTGEPNTCPR ddPTM_HeLa_A486_30min_R1 6 ASSVTTFTGEPNTCPR 16 0 H0YFA4;P52943;P52943-2 H0YFA4 CRIP2 Cysteine-rich protein 2 1 0 AS(0.039)S(0.959)VT(0.002)TFTGEPNTCPR;AS(0.015)S(0.984)VT(0.001)TFTGEPNTCPR;AS(0.004)S(0.995)VT(0.001)TFTGEPNTCPR;ASS(1)VTTFTGEPNTCPR;AS(0.005)S(0.995)VTTFTGEPNTCPR;AS(0.004)S(0.996)VTTFTGEPNTCPR ;;;;; 389.93 1.19E-134 3297790000 2030660 2489570 1875070 765564 2362050 2599780 2796570 3340120 2178700 1975570 TRUE FALSE FALSE 1888321.22 2292287.406 2601147.32 1782271.681 2065779.664 2279045.576 2096838.607 2579647.59 2367551.47 1480874.413 1.275139339 1.547928296 1.756494202 1.203526555 1.394972893 1.538986396 1.415946274 1.741975935 1.598752365 1 20.49801787 -4.250649435 22.76430679 1.48898909 1.275138913 0.054980266 0.220987866 1232.607242 2600333.496 0.053125572 0.690083461 5.62E-05 4.250649435 -0.213850177 ASS(ph)WPHRR ddPTM_HeLa_A486_30min_R1 1 ASSWPHRR 8 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 AS(0.147)S(0.853)WPHRR 96.665 0.001651 219590000 126050 125380 113830 19962 160500 124750 128950 134710 101150 115190 TRUE FALSE FALSE 117214.5459 115444.4322 157908.0245 46472.54482 140368.5934 109359.6134 96685.34611 104039.4737 109917.7634 86345.67424 1.357503395 1.337003077 1.828789061 0.53821509 1.625658664 1.266532624 1.119747422 1.204918192 1.272996759 1 16.39783628 -1.000001899 0.061638874 0.66533316 2.525287162 0.098532655 0.312588503 801.8918566 3.694344227 22.05527933 133.0592533 0.099999563 1.000001899 1.859954002 ASSAS(ph)VPAVGASAEGTRR ddPTM_HeLa_A485_30min_R1 1 ASSASVPAVGASAEGTRR 18 1 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 AS(0.047)S(0.394)AS(0.429)VPAVGAS(0.128)AEGT(0.001)RR 77.222 0.00073172 0 68647 101510 90825 60991 117650 101570 132050 139950 94936 101680 TRUE FALSE FALSE 83917.28832 113380.7115 124424.947 64322.78389 105936.3529 106888.0481 103836.4388 105627.0431 113988.7844 76333.04728 1.099357242 1.485342398 1.630027249 0.842659715 1.387817684 1.400285354 1.360307789 1.383765575 1.493308448 1 16.22002017 ASSDGEGTMSRPASVDGSPVS(ph)PSTNR ddPTM_HeLa_A486_30min_R1 2 ASSDGEGTMSRPASVDGSPVSPSTNR 26 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 ASSDGEGTMSRPASVDGSPVS(0.99)PS(0.008)T(0.002)NR;ASSDGEGTMSRPAS(0.004)VDGS(0.059)PVS(0.658)PS(0.139)T(0.139)NR ; 158.15 3.60E-10 331260000 177904 191019 158782 116903 234088 206385 281890 265560 170495 261810 TRUE FALSE FALSE 165433.8483 175881.9588 220266.6427 272156.092 204726.5003 180923.3171 211358.1405 205097.7851 185273.6439 196251.0719 0.842970419 0.896208908 1.122371667 1.38677506 1.04318666 0.921897217 1.076978273 1.045078547 0.944064367 1 17.58234101 -9.604733668 13.9070821 0.999968501 1.039149697 0.001321078 0.145244443 0 0 0.152402897 0.036963132 2.48E-10 9.604733668 0.039181196 ASSDGEGTMSRPASVDGSPVSPS(ph)TNR ddPTM_HeLa_A485_30min_R1 1 ASSDGEGTMSRPASVDGSPVSPSTNR 26 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 ASSDGEGTMSRPAS(0.001)VDGS(0.087)PVS(0.305)PS(0.472)T(0.135)NR 79.209 0.0037085 204870000 65557 85330 103000 104330 116880 102030 141720 124730 93972 148810 TRUE FALSE FALSE 80139.92848 95308.60123 141103.9862 110029.2837 105243.0168 107372.133 111440.3643 94139.77193 112831.3184 111714.4056 0.717364319 0.853145131 1.263077804 0.984915805 0.942072029 0.961130594 0.997546947 0.842682476 1.00999793 1 16.76945571 -4.528632162 24.99779142 0.994961391 0.751309417 0.448506119 0.100263872 114.9629581 499499.9779 0.02630597 0.07005449 2.96E-05 4.528632162 -0.243651975 ASSDKNVDSLSAPHNHPPEDPFGSVPFISHS(ph)GSPEK ddPTM_HeLa_A485_30min_R1 1 ASSDKNVDSLSAPHNHPPEDPFGSVPFISHSGSPEK 36 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 0 ASSDKNVDSLSAPHNHPPEDPFGSVPFIS(0.196)HS(0.693)GS(0.11)PEK 161.02 1.93E-14 221960000 92674 70691 67329 89417 125730 118060 155550 181500 82153 168220 TRUE FALSE FALSE 113289.0116 78957.69752 92236.79889 94301.62429 113211.8797 124241.439 122315.4718 136986.8404 98640.35355 126285.8499 0.89708397 0.625229965 0.730381108 0.746731517 0.896473198 0.983811244 0.968560388 1.08473626 0.781087934 1 16.94633347 -5.871268828 2.87878508 0.968311729 0.736748792 0.534368231 0.09395935 0.189428753 3.167410735 0.029753903 0.034911601 1.35E-06 5.871268828 -0.231562937 ASSEDVASS(ph)PER ddPTM_HeLa_A485_30min_R1 2 ASSEDVASSPER 12 0 M0R2H0;A0A087WWI0;Q9H2I8 M0R2H0 C10orf11 Leucine-rich repeat-containing protein C10orf11 1 0 ASSEDVAS(0.003)S(0.997)PER;ASSEDVASS(1)PER ; 244.68 5.73E-28 2433100000 2443300 3444100 3554800 2795900 3481000 3586000 3778500 3825100 2965800 3573700 TRUE FALSE FALSE 2986803.656 3846857.535 4869868.448 2948632.937 3134419.417 3773757.415 2971192.607 2886988.227 3561008.856 2682842.359 1.113298232 1.433873862 1.815189935 1.099070517 1.168320385 1.406626596 1.107479386 1.076093129 1.327326909 1 21.35533086 ASSEDVASS(ph)PER ddPTM_HeLa_A486_30min_R1 2 ASSEDVASSPER 12 0 M0R2H0;A0A087WWI0;Q9H2I8 M0R2H0 C10orf11 Leucine-rich repeat-containing protein C10orf11 1 0 ASSEDVASS(1)PER;ASSEDVAS(0.006)S(0.994)PER ; 211.05 1.43E-17 2899600000 3579700 4138800 3783900 1171640 4795500 3794000 3865800 3830100 3898200 4070200 TRUE FALSE FALSE 3328781.516 3810826.415 5249127.416 2727637.131 4194003.674 3325934.855 2898535.952 2958069.84 4236099.115 3050995.427 1.091047691 1.249043634 1.720463875 0.894015477 1.374634533 1.090114664 0.950029595 0.969542535 1.388431814 1 21.54084859 -5.961580221 1.329019107 1.074577802 1.300125037 0.120181381 0.230718786 0.879130522 3.227866585 0.097208811 0.113742304 1.09E-06 5.961580221 0.225547235 ASSGDIGS(ph)LDYQEFVVDIESR ddPTM_HeLa_A485_30min_R1 3 ASSGDIGSLDYQEFVVDIESR 21 0 J3KN59 J3KN59 BNIP2 1 0 ASSGDIGS(1)LDYQEFVVDIESR;AS(0.001)S(0.001)GDIGS(0.997)LDYQEFVVDIESR;ASSGDIGS(1)LDYQEFVVDIESR ;; 137.12 4.51E-07 144197000 93730 111621 106032 81366 126180 80154 101825 105760 91288 107521 TRUE FALSE FALSE 114579.9151 124674.105 145257.6492 85810.81855 113617.0762 84350.7395 80069.25692 79822.19417 109608.6643 80717.99348 1.419508962 1.544563976 1.799569624 1.063094049 1.407580531 1.045005405 0.991962925 0.988902111 1.357921072 1 16.30060269 -5.273641947 24.90573175 1.124868702 1.583549169 0.626772332 0.164702953 455.983753 930672.9399 0.047139026 0.070507179 5.33E-06 5.273641947 0.458680467 ASSGDIGS(ph)LDYQEFVVDIESR ddPTM_HeLa_A486_30min_R1 4 ASSGDIGSLDYQEFVVDIESR 21 0 J3KN59 J3KN59 BNIP2 1 0 ASS(0.001)GDIGS(0.999)LDYQEFVVDIESR;AS(0.008)S(0.008)GDIGS(0.984)LDYQEFVVDIESR;ASSGDIGS(1)LDYQEFVVDIESR;ASSGDIGS(1)LDYQEFVVDIESR ;;; 242.8 1.84E-46 255198000 144482 161173 148238 75513 177403 139696 163034 175768 126354 135248 TRUE FALSE FALSE 134354.5579 148401.0645 205639.7236 175798.0802 155151.4615 122461.7278 122241.1688 135749.4634 137306.4665 101381.0205 1.325243692 1.463795332 2.028384826 1.734033445 1.530379757 1.207935443 1.205759897 1.339002732 1.354360666 1 16.62942807 -6.130177052 3.706994439 1.241796873 1.651774005 0.512264332 0.193787322 0.223781351 5.493001862 0.070936715 0.071433577 7.41E-07 6.130177052 0.409977132 ASSGDQGS(ph)PPCFLR ddPTM_HeLa_A485_30min_R1 1 ASSGDQGSPPCFLR 14 0 A6NN50;O75147-2;O75147-1;O75147-4;O75147 A6NN50 OBSL1 Obscurin-like protein 1 1 0 ASSGDQGS(1)PPCFLR 130.47 1.97E-05 165010000 165210 197450 205250 154650 224050 198990 218110 232250 171670 208260 TRUE FALSE FALSE 201960.3945 220540.0599 281180.5162 163098.1379 201742.7953 209408.8087 171509.0167 175290.3233 206122.5943 156344.6147 1.291764317 1.410602215 1.79846627 1.043196391 1.290372525 1.33940532 1.09699344 1.121179157 1.318386276 1 17.25437 -5.282311078 24.9967198 1.186522909 1.491310132 0.462582694 0.16119604 736.8622023 882491.9855 0.045376075 0.067382592 5.22E-06 5.282311078 0.304787224 ASSGDQGS(ph)PPCFLR ddPTM_HeLa_A486_30min_R1 1 ASSGDQGSPPCFLR 14 0 A6NN50;O75147-2;O75147-1;O75147-4;O75147 A6NN50 OBSL1 Obscurin-like protein 1 1 0 ASSGDQGS(1)PPCFLR 141.57 1.09E-07 126130000 158660 180440 149630 52165 230340 174880 197480 182150 164440 172350 TRUE FALSE FALSE 147538.7533 166141.2772 207570.7432 121442.7563 201448.6094 153305.0836 148068.4153 140678.4213 178693.7916 129192.4382 1.142007655 1.285998465 1.606678736 0.940014431 1.559291025 1.186641307 1.146107445 1.088906002 1.383159836 1 16.9791621 -6.494315786 24.7321412 1.162583803 1.309029743 0.11927111 0.199151178 1395.928317 1208710.695 0.067156708 0.059102321 3.20E-07 6.494315786 0.14644594 ASSHS(ph)S(ph)QTQGGGSVTK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.002)S(0.204)HS(0.903)S(0.882)QT(0.008)QGGGSVTK 114.46 5.51E-06 0 203560 261230 218500 226350 187090 357340 211040 317420 318250 210030 TRUE FALSE FALSE 248841.2197 291778.5761 299332.2425 238714.9274 168462.6627 376049.7698 165949.58 239572.2473 382119.8558 157673.3863 1.578206859 1.850525209 1.898432256 1.51398364 1.068428012 2.384992031 1.052489477 1.519420956 2.423489878 1 17.26657964 -10.36784678 3.351504181 0.994872178 1.681122839 0.182402572 0.442460256 103356455.8 142357988.1 5205445.104 0.108947219 4.29E-11 10.36784678 0.686250661 ASSHS(ph)SQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.011)S(0.265)HS(0.663)S(0.061)QTQGGGSVTK 201.16 3.72E-25 13773000000 8893400 16021000 17708000 3493300 21645000 11947000 15740000 17507000 16843000 10164000 TRUE FALSE FALSE 10871706.15 17894516.59 24258926.09 3684130.133 19489947.8 12572526.45 12377020.42 13213380.8 20223235.61 7630301.855 1.424806824 2.345191177 3.179287865 0.482828885 2.554282671 1.647710233 1.622087914 1.731698307 2.650384741 1 22.8633087 -5.233264372 24.94466025 1.734281043 2.319304475 0.140856743 0.719542042 1541.354736 1364632.046 0.188446025 0.326313924 5.84E-06 5.233264372 0.585023432 ASSHS(ph)SQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 5 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASS(0.025)HS(0.412)S(0.412)QT(0.15)QGGGSVTK;ASS(0.082)HS(0.836)S(0.082)QTQGGGSVTK;ASS(0.039)HS(0.478)S(0.478)QT(0.006)QGGGSVTK;AS(0.23)S(0.23)HS(0.263)S(0.263)QT(0.014)QGGGSVTK;ASS(0.041)HS(0.472)S(0.472)QT(0.014)QGGGSVTK ;;;; 273.32 1.92E-58 27533930000 12873188 12802195 12806161 349126.4 16630023 9523067 10493444 10291104 14175836 3807675 TRUE FALSE FALSE 11970844 11787702.44 17765049.5 812783.9031 14544130.45 8348207.817 7867873.323 7948044.272 15404608.88 2854208.396 4.194103 4.129937554 6.224159919 0.284766839 5.095679231 2.924876764 2.756586847 2.784675528 5.397156318 1 21.44465924 -5.226226599 24.99993598 3.053874841 4.777453298 0.242022418 1.567683922 960.186637 681700.4021 0.403582852 0.698990611 5.94E-06 5.226226599 1.723578457 ASSHS(ph)SQTQGGGSVTKK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.054)S(0.332)HS(0.445)S(0.09)QT(0.079)QGGGSVTKK 56.719 0.0096972 0 9359.2 14362 10470 5018.3 16422 13334 15125 20625 12429 10784 TRUE FALSE FALSE 11441.12175 16041.51097 14343.28869 5292.437022 14786.96802 14032.14762 11893.42019 15566.68641 14923.38629 8095.747265 1.413226152 1.981473784 1.771706579 0.653730514 1.826510578 1.733273923 1.469094798 1.922822675 1.843361188 1 12.98294854 ASSHSS(ph)QTQGGGSVTK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASS(0.002)HS(0.082)S(0.908)QT(0.008)QGGGSVTK 268.6 2.47E-51 2006900000 1329900 2386400 2318700 496540 3056400 1754600 2204600 2268800 2501200 1426800 TRUE FALSE FALSE 1625731.667 2665468.721 3176483.619 523664.7229 2752094.084 1846468.143 1733569.2 1712373.243 3003167.898 1071125.018 1.517779567 2.488475832 2.965558235 0.488892252 2.569349084 1.723858664 1.618456455 1.598667955 2.803751053 1 20.03069545 ASSHSS(ph)QTQGGGSVTK ddPTM_HeLa_A486_30min_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.037)S(0.146)HS(0.348)S(0.468)QT(0.001)QGGGSVTK 186.9 5.61E-18 133810000 94155 187980 421590 2043.7 361490 72074 36903 84815 191780 17437 TRUE FALSE FALSE 87555.22072 173083.7802 584840.9386 4757.836883 316148.5534 63182.24267 27669.47908 65504.476 208403.6448 13070.6617 6.698606597 13.24215897 44.74455478 0.364008877 24.18764716 4.833897786 2.116914943 5.011565404 15.94438365 1 13.67404456 -6.277407313 23.99472772 5.803046178 18.11453617 0.211419752 11.64583441 791.6789019 1189637.134 4.067170693 3.599968784 5.28E-07 6.277407313 12.31148999 ASSHSSQTQGGGS(ph)VTK ddPTM_HeLa_A485_30min_R1 10 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASSHSSQTQGGGS(0.995)VT(0.005)K;ASSHSSQTQGGGS(0.997)VT(0.003)K;ASSHSSQTQGGGS(0.999)VT(0.001)K;ASSHSSQT(0.002)QGGGS(0.996)VT(0.002)K;ASSHSSQTQGGGS(0.999)VT(0.001)K;ASSHSSQTQGGGS(0.999)VT(0.001)K;ASSHSS(0.002)QT(0.071)QGGGS(0.924)VT(0.003)K;ASSHSSQTQGGGS(0.992)VT(0.008)K;ASSHSSQTQGGGS(1)VTK;ASSHSSQTQGGGS(1)VTK ;;;;;;;;; 179.17 9.93E-18 18930832000 4556401 10136320 9419550 1478588 12100665 6428726 7050604 8492295 8269540 3232374 TRUE FALSE FALSE 5569956.683 11321674.45 12904233.53 1559359.518 10895880.3 6765324.153 5544184.857 6409546.336 9929160.825 2426602.649 2.295372374 4.665648269 5.317818939 0.642610161 4.49017902 2.787981854 2.284751836 2.641366248 4.091795098 1 21.21050646 -9.789374854 0.22835158 3.18E-14 3.749106301 0.186147478 1.346983321 25.71228874 1.5009261 24.67756382 2.963705713 1.62E-10 9.789374854 3.749106301 ASSHSSQTQGGGS(ph)VTK ddPTM_HeLa_A486_30min_R1 5 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASSHSSQTQGGGS(0.996)VT(0.004)K;ASSHSSQT(0.001)QGGGS(0.987)VT(0.012)K;ASSHSSQTQGGGS(1)VTK;ASSHSSQTQGGGS(1)VTK;ASSHSSQTQGGGS(0.993)VT(0.007)K ;;;; 223.07 5.41E-34 10486400000 7224220 5950840 9004530 313351 8691650 4992670 4741350 4541200 8156510 1271212 TRUE FALSE FALSE 6717839.484 5479273.766 12491325.17 729496.9639 7601462.211 4376725.137 3555014.081 3507267.894 8863522.854 952892.241 7.049946673 5.750150468 13.1088539 0.765560818 7.977252709 4.593095577 3.730761914 3.680655317 9.301705348 1 19.86195355 -5.269670672 24.99314659 4.672036093 8.347700463 0.27906177 3.067210291 857.5622114 2603864.103 0.826560828 1.249626146 5.37E-06 5.269670672 3.67566437 ASSHSSQTQGGGS(ph)VTKK ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASSHSSQTQGGGS(0.989)VT(0.011)KK 160.47 5.10E-12 184240000 46021 84638 46053 12203 77382 60795 62593 94306 65255 28110 TRUE FALSE FALSE 56258.21268 94535.67785 63089.92113 12869.61899 69677.57638 63978.13219 49219.49421 71177.30563 78351.07995 21102.69433 2.665925583 4.47979184 2.989661896 0.609856675 3.301833183 3.031751832 2.332379622 3.372901324 3.712847219 1 14.36513959 -9.23975453 9.952274304 0.999363225 2.929677173 0.270402783 0.957761597 0 0 0.962118362 0.233347978 5.76E-10 9.23975453 1.930313948 ASSHSSQTQGGGS(ph)VTKK ddPTM_HeLa_A486_30min_R1 3 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASSHSSQTQGGGS(0.996)VT(0.004)KK;ASSHSSQT(0.001)QGGGS(0.782)VT(0.217)KK;ASSHSSQTQGGGS(0.98)VT(0.02)KK ;; 193.59 1.79E-18 297328000 381402 266047 230152 29983.2 286913 385835 348174 305344 328944 279365.8 TRUE FALSE FALSE 354667.6894 244964.4668 319273.0181 69802.40487 250925.6962 338234.6006 261057.1826 235823.8368 357457.1308 209410.7853 1.693645763 1.16977961 1.524625475 0.33332765 1.198246288 1.615172781 1.246627208 1.12613033 1.706966192 1 17.67597622 -6.019644246 24.81455824 1.348381463 1.149382229 0.036409983 0.3852624 2390.256945 3019364.174 0.127380938 0.129181912 9.56E-07 6.019644246 -0.198999234 ASSHSSQTQGGGSVTK(ac)K ddPTM_HeLa_A485_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ASSHSSQTQGGGSVTK(1)K 202.5 6.02E-18 12817000 4482.8 9347.6 11381 1447.5 11877 6626.3 6860.3 6710.4 9716.2 2519.5 FALSE TRUE FALSE 5479.983395 10440.72051 15591.3055 1526.57326 10694.48418 6973.242822 5394.540862 5064.663879 11666.15222 1891.435018 2.897262313 5.519999581 8.243109256 0.807097915 5.654164206 3.686747235 2.852088922 2.677683257 6.167884229 1 10.8852655 -5.26253046 24.99941625 3.433653462 5.550111135 0.210683902 2.012279126 163.2094004 3739570.703 0.54354811 0.860718828 5.46E-06 5.26253046 2.116457673 ASSHSSQTQGGGSVTK(ac)KR ddPTM_HeLa_A485_30min_R1 2 ASSHSSQTQGGGSVTKKR 18 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; ASSHSSQTQGGGSVTK(0.5)K(0.5)R;ASSHSSQTQGGGSVTK(0.5)K(0.5)R 141.97 2.17E-09 12086400 7982.4 25450.3 26855 2202.89 25579.2 15918.9 15454.6 22891.5 19656.9 4162.9 FALSE TRUE FALSE 9758.057341 28426.4912 36789.78203 2323.228303 23032.44503 16752.38899 12152.59846 17277.32373 23601.85953 3125.165642 3.122412844 9.095995044 11.77210626 0.743393653 7.36999176 5.360480341 3.888625387 5.528450556 7.55219474 1 11.60971694 -5.257171141 24.99989988 4.811539938 8.106753383 0.225430107 2.933575626 583.6348893 3418449.859 0.787736377 1.305201988 5.53E-06 5.257171141 3.295213445 ASSK(ac)RPATADSPKPSAK ddPTM_HeLa_A485_30min_R1 1 ASSKRPATADSPKPSAK 17 3 Q03111 Q03111 MLLT1 Protein ENL 0 1 ASSK(1)RPATADSPKPSAK 109.38 0.00038373 8334000 18360 19517 16129 23043 31663 36375 53002 67569 51490 87838 FALSE TRUE FALSE 22444.11866 21799.34337 22095.78828 24301.78074 28510.52054 38279.53875 41677.68971 50997.59681 61823.57071 65941.60314 0.340363558 0.330585584 0.335081151 0.368534879 0.432360137 0.580506644 0.632039376 0.773375144 0.937550314 1 16.00890134 -7.015464487 0.675212055 1.014499558 0.318535557 0.989641436 0.024721418 0.065895942 0.058443287 0.023201743 0.013270062 9.65E-08 7.015464487 -0.695964001 down ASSK(ac)RPATADSPKPSAK ddPTM_HeLa_A486_30min_R1 1 ASSKRPATADSPKPSAK 17 3 Q03111 Q03111 MLLT1 Protein ENL 0 1 ASSK(1)RPATADSPKPSAK 90.654 0.0034173 14831000 15519 17482 13623 7644.3 22015 21881 22241 23338 18307 24713 FALSE TRUE FALSE 14431.19824 16096.66265 18898.19044 17796.31672 19253.67342 19181.54469 16676.06656 18024.44686 19893.8655 18524.70395 0.779024501 0.868929549 1.020161536 0.960680223 1.039351208 1.035457557 0.900206913 0.972995138 1.073910037 1 14.17716287 -4.572576136 3.067219481 0.997229102 0.786849153 0.710007592 0.04654873 0.139539228 2.524530969 0.012594362 0.049754456 2.68E-05 4.572576136 -0.210379949 ASSKT(ph)SPHWK ddPTM_HeLa_A485_30min_R1 1 ASSKTSPHWK 10 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 AS(0.038)S(0.297)KT(0.332)S(0.332)PHWK 80.96 0.0083374 444810000 462610 727230 433230 323860 935510 720570 1016400 1409500 654860 678460 TRUE FALSE FALSE 565515.9985 812273.2224 593499.8052 341551.6517 842367.3396 758297.931 799237.8368 1063817.915 786284.3953 509332.4081 1.110308297 1.594780166 1.165250425 0.670586922 1.653865582 1.488807543 1.569187085 2.088651533 1.543754889 1 18.95824799 -5.864897814 22.25490548 1.609006722 1.168942045 0.278171381 0.325028985 6.492843384 1377.402392 0.101453934 0.115038059 1.36E-06 5.864897814 -0.440064677 ASSLSESS(ph)PPK ddPTM_HeLa_A485_30min_R1 2 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ASSLS(0.003)ES(0.032)S(0.966)PPK;AS(0.001)SLS(0.011)ES(0.482)S(0.506)PPK ; 105.65 0.00072895 7732020000 4845590 4353190 3369570 7791590 6694270 4973240 7279000 7152900 4817280 10165300 TRUE FALSE FALSE 5923474.778 4862257.703 4616114.163 8217224.832 6027764.974 5233631.156 5723782.186 5398640.06 5784063.909 7631277.788 0.776210085 0.637148566 0.604894002 1.076782298 0.789876236 0.685813215 0.750042436 0.707435925 0.757941733 1 22.86349321 -11.28758329 1.879228251 1.85646375 0.753247768 0.268022714 0.121946637 4881717.441 657485.5595 17718829.76 0.03474221 5.16E-12 11.28758329 -1.103215982 ASSLSESS(ph)PPK ddPTM_HeLa_A486_30min_R1 2 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ASSLS(0.012)ES(0.029)S(0.959)PPK;ASSLSES(0.003)S(0.997)PPK ; 210.4 4.01E-15 17232900000 13874800 14933100 8228500 10796400 14797000 18070500 23894300 22252400 11688700 24427700 TRUE FALSE FALSE 12902248.17 13749746.77 11414795.57 25134564.82 12941022.28 15841145.44 17915693.41 17186014.29 12701885.93 18310844.92 0.704623311 0.750907281 0.623389888 1.372660023 0.70674086 0.865123674 0.97841981 0.938570249 0.693681039 1 24.12619503 ASSNKDFT(ph)PNR ddPTM_HeLa_A485_30min_R1 1 ASSNKDFTPNR 11 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 AS(0.002)S(0.002)NKDFT(0.997)PNR 66.285 0.020718 308010000 556720 530430 392910 737120 748370 695160 929170 994980 561200 948690 TRUE FALSE FALSE 680560.4433 592459.1744 538263.7593 777386.9991 673859.6551 731557.5027 730645.2389 750959.5949 673827.6924 712199.0423 0.955576184 0.831873029 0.755777146 1.091530531 0.946167595 1.02718125 1.025900339 1.054423764 0.946122716 1 19.44192097 -5.264037222 24.99767508 1.013652147 0.84615521 0.603424744 0.061405483 147.2852199 1417253.445 0.01677406 0.026199443 5.44E-06 5.264037222 -0.167496937 ASSNKDFT(ph)PNRDK ddPTM_HeLa_A485_30min_R1 2 ASSNKDFTPNRDK 13 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 AS(0.001)S(0.001)NKDFT(0.999)PNRDK;AS(0.019)S(0.015)NKDFT(0.966)PNRDK ; 86.488 0.0018708 689370000 861050 810960 476070 1096750 1169700 1203450 1787040 2155640 782000 1650300 TRUE FALSE FALSE 1052587.602 905794.7176 652188.1039 1156662.675 1053240.561 1266460.781 1405224.305 1626965.91 938940.2271 1238910.582 0.849607403 0.731121948 0.526420642 0.933612718 0.850134446 1.02223744 1.134241911 1.313223032 0.757875702 1 20.24064063 -5.928377623 1.475179071 1.074236382 0.718890167 0.429319885 0.15910757 0.350346049 1.575142856 0.062877676 0.074661227 1.18E-06 5.928377623 -0.355346214 ASSNKDFT(ph)PNRDK ddPTM_HeLa_A486_30min_R1 3 ASSNKDFTPNRDK 13 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 AS(0.001)S(0.001)NKDFT(0.998)PNRDK;AS(0.001)S(0.001)NKDFT(0.999)PNRDK;AS(0.003)S(0.002)NKDFT(0.995)PNRDK ;; 89.468 0.0016329 810900000 1193550 984750 499631 660210 1127010 1232000 1777540 1762830 799890 1883170 TRUE FALSE FALSE 1109888.308 906714.8236 693101.5038 1537002.245 985649.8968 1080008.366 1332780.691 1361472.091 869225.1092 1411611.975 0.786255946 0.642325823 0.491000017 1.088827718 0.698244216 0.765088697 0.944155133 0.964480407 0.615767736 1 20.42891214 -5.247840175 24.99463619 0.858402517 0.640107137 0.322327974 0.151188235 983.05694 1806805.067 0.040224373 0.0691869 5.65E-06 5.247840175 -0.21829538 ASSPAES(ph)SPEDSGYMR ddPTM_HeLa_A485_30min_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 ASS(0.004)PAES(0.544)S(0.452)PEDSGYMR 210.34 1.33E-25 355300000 99884 116650 130700 78802 155190 139920 157340 189000 104520 156430 TRUE FALSE FALSE 122102.8512 130291.2028 179051.3689 83106.75372 139738.7387 147245.9948 123723.0237 142647.4537 125496.2053 117434.8799 1.039749445 1.109476187 1.52468644 0.707683729 1.189925334 1.253852305 1.053545793 1.214694082 1.068645069 1 16.84150145 -7.999920268 24.99358798 0.999999991 1.137604644 0.048600422 0.193465967 7.160251364 2243421.443 0.180072694 0.04649457 1.00E-08 7.999920268 0.137604653 ASSPAESS(ph)PEDSGYMR ddPTM_HeLa_A486_30min_R1 2 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 ASSPAES(0.159)S(0.841)PEDSGYMR;ASSPAES(0.024)S(0.976)PEDSGYMR ; 313.16 3.32E-78 1102830000 715410 815900 757290 278250 1014640 780650 849650 906540 760060 869020 TRUE FALSE FALSE 665263.4534 751245.1125 1050532.969 647780.062 887374.3901 684341.3401 637058.5833 700140.6316 825942.6128 651411.7356 1.021264151 1.153256952 1.612701939 0.994424918 1.362232735 1.050551138 0.977966083 1.074805063 1.267927131 1 19.31321019 -6.289949343 24.62964954 1.072907437 1.232890345 0.156253074 0.17940029 1167.194292 1008330.638 0.062984386 0.055558429 5.13E-07 6.289949343 0.159982908 ASSPHGLGS(ph)PLVAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ASSPHGLGSPLVASPR 16 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 2 0 ASSPHGLGS(1)PLVAS(1)PR 83.245 0.00242 146400000 24942 52072 41493 24656 56135 57557 77144 76658 69084 68059 TRUE FALSE FALSE 30490.26185 58161.36743 56842.98737 26002.89485 50546.0023 60570.59552 60661.55419 57857.5053 82948.52512 51093.14383 0.596758382 1.138339962 1.112536499 0.508931197 0.989291292 1.18549361 1.187273862 1.132392743 1.623476633 1 15.64084209 -6.207857107 3.442476605 1.236361908 0.868740551 0.370168899 0.236610992 0.289325637 6.943400673 0.083493844 0.080961244 6.20E-07 6.207857107 -0.367621357 ASSPHGLGS(ph)PLVAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ASSPHGLGSPLVASPR 16 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 2 0 ASSPHGLGS(1)PLVAS(1)PR 134.29 9.65E-06 328140000 102000 169150 214100 20334 267680 134020 174890 148820 165150 127670 TRUE FALSE FALSE 94850.32673 155745.938 297005.2538 47338.57962 234105.0784 117485.975 131130.6722 114936.9347 179465.335 95700.60101 0.991115267 1.627429048 3.103483684 0.494652898 2.446223701 1.227640932 1.370217855 1.20100536 1.87527908 1 16.54624036 ASSPHGLGSPLVAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 ASSPHGLGSPLVASPR 16 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 ASSPHGLGSPLVAS(1)PR;ASSPHGLGSPLVAS(1)PR;ASSPHGLGSPLVAS(1)PR;ASSPHGLGSPLVAS(1)PR ;;; 171.37 2.32E-12 971960000 367028 695040 600270 225597 828180 889120 1008070 1030490 1089030 807070 TRUE FALSE FALSE 448672.1124 776318.882 822334.8523 237920.7929 745723.4913 935672.9484 792687.6093 777760.7118 1307588.332 605882.302 0.74052685 1.281303117 1.357251812 0.392684837 1.230805866 1.544314705 1.308319465 1.283682836 2.158155681 1 19.20867804 -5.997871383 24.99882637 1.458363431 0.973584094 0.296623923 0.373345938 93.11459887 1093525.67 0.11486749 0.12942319 1.00E-06 5.997871383 -0.484779337 ASSPHGLGSPLVAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 ASSPHGLGSPLVASPR 16 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 ASSPHGLGSPLVAS(1)PR;ASSPHGLGSPLVAS(1)PR;ASSPHGLGSPLVAS(1)PR;ASSPHGLGS(0.051)PLVAS(0.949)PR ;;; 184.6 6.90E-18 1295580000 567859 857550 1091080 73347.3 1394770 612478 912760 821850 1022110 676607 TRUE FALSE FALSE 528055.0165 789594.6149 1513575.396 170756.2212 1219824.941 536916.6916 684377.7938 634732.6959 1110707.318 507180.2032 1.041158573 1.556832482 2.984295102 0.336677615 2.405111503 1.058631012 1.349377971 1.251493437 2.189965836 1 18.95213891 ASSPS(ph)PLTIGTPESQR ddPTM_HeLa_A485_30min_R1 4 ASSPSPLTIGTPESQR 16 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 ASS(0.001)PS(0.995)PLT(0.003)IGTPESQR;ASSPS(1)PLTIGTPESQR;ASSPS(1)PLTIGTPESQR;ASSPS(0.995)PLT(0.005)IGTPESQR ;;; 356.15 1.30E-104 1324210000 477637 546688 581959 623570 746080 560108 616450 568194 618425 784940 TRUE FALSE FALSE 583885.7028 610618.406 797249.8514 657634.0501 671797.6556 589434.3888 484740.4216 428843.5306 742537.225 589268.9038 0.990864611 1.036230492 1.352947434 1.116016891 1.140052786 1.000280831 0.822613273 0.727755237 1.260099116 1 19.16856661 -6.395915371 3.799861798 0.92801804 1.133953618 0.212946708 0.156781357 0.337796628 8.6073034 0.058680252 0.050755695 4.02E-07 6.395915371 0.205935578 ASSPS(ph)PLTIGTPESQR ddPTM_HeLa_A486_30min_R1 4 ASSPSPLTIGTPESQR 16 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 ASSPS(1)PLTIGTPESQR;ASSPS(0.999)PLT(0.001)IGTPESQR;ASSPS(1)PLTIGTPESQR;ASSPS(1)PLTIGTPESQR ;;; 383.14 1.96E-134 1978990000 1020040 1420380 1206690 481809 1409590 1164580 1337940 1237060 1185970 1084280 TRUE FALSE FALSE 948540.4635 1307823.916 1673952.684 1121675.701 1232786.078 1020905.96 1003173.261 955408.4428 1288770.834 812769.2305 1.167047703 1.609096244 2.059566998 1.38006664 1.516772575 1.256083427 1.234265795 1.175497801 1.585654065 1 19.63248626 -6.039636811 1.875880399 1.257651748 1.600463704 0.255200187 0.250137183 0.485833408 3.428407246 0.096310458 0.103019047 9.13E-07 6.039636811 0.342811956 ASSRS(ph)PVFTPR ddPTM_HeLa_A485_30min_R1 4 ASSRSPVFTPR 11 1 P52735-3 P52735-3 1 0 AS(0.229)S(0.166)RS(0.605)PVFTPR;AS(0.008)S(0.006)RS(0.986)PVFTPR;AS(0.004)S(0.003)RS(0.994)PVFTPR;AS(0.032)S(0.026)RS(0.941)PVFTPR ;;; 130.47 2.06E-05 1280360000 343899 508058 544296 350764 605332 526453 617680 678810 508122 519227 TRUE FALSE FALSE 420398.1461 567470.9636 745653.7404 369925.3491 545063.0206 554017.265 485707.622 512330.7832 610097.4246 389793.2646 1.078515676 1.455825473 1.912946703 0.949029608 1.398338735 1.421310514 1.246064687 1.314365408 1.56518206 1 18.57234964 -10.77742803 2.618338547 0.902294 1.374194639 0.165681508 0.249876891 38512884.55 29765989 24193275.97 0.060678875 1.67E-11 10.77742803 0.471900639 ASSRS(ph)PVFTPR ddPTM_HeLa_A486_30min_R1 4 ASSRSPVFTPR 11 1 P52735-3 P52735-3 1 0 ASSRS(1)PVFTPR;AS(0.002)S(0.001)RS(0.997)PVFTPR;AS(0.049)S(0.04)RS(0.911)PVFTPR;AS(0.004)S(0.004)RS(0.992)PVFTPR ;;; 143.46 5.07E-07 4185770000 715450 846880 801760 292119 1167740 800170 945210 914520 757360 799840 TRUE FALSE FALSE 665300.6496 779770.1445 1112222.944 680067.7949 1021271.16 701453.1609 708708.4606 706303.7598 823008.5746 599554.8579 1.109657675 1.300581814 1.855081198 1.134287857 1.703382346 1.169956596 1.18205774 1.17804693 1.372699368 1 19.19353224 ASSRVS(ph)GSFPEDSSK ddPTM_HeLa_A486_30min_R1 1 ASSRVSGSFPEDSSK 15 1 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 0 AS(0.055)S(0.046)RVS(0.887)GS(0.012)FPEDSSK 90.718 0.00056406 249040000 235840 221310 153330 83557 267720 279810 327770 289480 203380 363880 TRUE FALSE FALSE 219308.8339 203772.5896 212703.4823 194524.9187 234140.0612 245289.8871 245758.4792 223571.7233 221009.1422 272762.0795 0.804029777 0.747070817 0.779813245 0.713167017 0.858404004 0.899281482 0.900999434 0.819658377 0.810263445 1 18.05728356 -5.868460852 6.384631141 0.87584739 0.761776836 0.547226675 0.053686565 0.17525998 9.305479412 0.016477601 0.018779506 1.35E-06 5.868460852 -0.114070554 ASSSGPRS(ph)PLDQR ddPTM_HeLa_A485_30min_R1 6 ASSSGPRSPLDQR 13 1 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 ASSS(0.004)GPRS(0.995)PLDQR;ASSS(0.001)GPRS(0.998)PLDQR;ASSSGPRS(0.999)PLDQR;AS(0.004)S(0.018)S(0.104)GPRS(0.873)PLDQR;AS(0.026)S(0.022)S(0.018)GPRS(0.934)PLDQR;AS(0.106)S(0.106)S(0.017)GPRS(0.771)PLDQR ;;;;; 150.19 8.24E-07 9308000000 4798590 7739190 7612190 5105190 9199550 7519700 8469270 9951040 6941070 6935680 TRUE FALSE FALSE 5866019.791 8644220.948 10428255.85 5384073.603 8283610.5 7913419.864 6659741.277 7510531.837 8334079.082 5206742.618 1.126619889 1.660197475 2.002836825 1.034057951 1.590939117 1.5198408 1.279060973 1.442462666 1.600632045 1 22.31194966 -10.68551616 2.645999718 0.929472354 1.479392326 0.223109621 0.264524109 36643881.39 31362511.74 17354127.98 0.068787999 2.06E-11 10.68551616 0.549919973 ASSSGPRS(ph)PLDQR ddPTM_HeLa_A486_30min_R1 4 ASSSGPRSPLDQR 13 1 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 AS(0.002)S(0.002)S(0.009)GPRS(0.987)PLDQR;AS(0.001)S(0.001)S(0.001)GPRS(0.997)PLDQR;AS(0.002)S(0.013)S(0.01)GPRS(0.975)PLDQR;AS(0.002)S(0.002)S(0.002)GPRS(0.995)PLDQR ;;; 111.43 0.00014172 12375390000 8495570 9775720 9172640 3000050 12271400 8441290 9553250 10256720 7880690 8954200 TRUE FALSE FALSE 7900074.414 9001056.345 12724531.86 6984268.014 10732206.59 7399889.465 7162925.806 7921488.759 8563794.554 6712010.038 1.177005751 1.341037378 1.895785583 1.040562808 1.598955682 1.102484863 1.067180437 1.180196203 1.275891202 1 22.67831344 -6.283661571 24.41898309 1.132789633 1.413190417 0.284066392 0.226457265 828.1029984 909962.3906 0.078338842 0.069145537 5.20E-07 6.283661571 0.280400783 ASSSKES(ph)PSPSVR ddPTM_HeLa_A486_30min_R1 3 ASSSKESPSPSVR 13 1 H0Y517;H7C1U3;Q5T0F9-3;Q5T0F9-2;Q5T0F9 H0Y517 CC2D1B Coiled-coil and C2 domain-containing protein 1B 1 0 AS(0.008)S(0.042)S(0.035)KES(0.456)PS(0.456)PS(0.002)VR;AS(0.007)S(0.11)S(0.11)KES(0.69)PS(0.072)PS(0.011)VR;AS(0.002)S(0.009)S(0.038)KES(0.898)PS(0.05)PS(0.003)VR ;; 91.932 0.00071159 2000750000 2248450 2500320 1645630 913140 2712660 2479910 2852000 2954040 2103660 2867400 TRUE FALSE FALSE 2090845.266 2302185.537 2282862.007 2125836.068 2372412.888 2173963.918 2138399.435 2281469.578 2286006.943 2149384.376 0.972764708 1.071090663 1.062100401 0.989044161 1.103763903 1.011435619 0.994889261 1.061452574 1.06356358 1 21.03549207 -4.243875359 24.12426345 1.040459574 0.972764618 0.228641632 0.036862032 3468.551673 4763952.359 0.008957614 0.25630224 5.70E-05 4.243875359 -0.067694957 ASSSS(ph)MKIPLNKFPGFAKPGTEQYLLAK ddPTM_HeLa_A486_30min_R1 2 ASSSSMKIPLNKFPGFAKPGTEQYLLAK 28 3 Q9Y5X1 Q9Y5X1 SNX9 Sorting nexin-9 1 0 AS(0.005)S(0.024)S(0.445)S(0.526)MKIPLNKFPGFAKPGTEQYLLAK;AS(0.034)S(0.031)S(0.147)S(0.788)MKIPLNKFPGFAKPGTEQYLLAK ; 135.88 2.42E-06 787510000 593270 417556 124448 197026 293335 466685 638640 868650 252861 455337 TRUE FALSE FALSE 551684.8366 384467.3418 172637.5984 458686.4851 256542.1891 409110.1496 478845.5172 670877.3575 274779.1951 341317.6515 1.616338429 1.126420917 0.505797452 1.343869803 0.751622976 1.19861996 1.402932181 1.965551312 0.80505416 1 18.3807555 -6.548820016 5.749532878 1.367268349 1.048192821 0.052078587 0.401146072 0.389601743 39.0168314 0.150901465 0.118618387 2.83E-07 6.548820016 -0.319075528 ASSTS(ph)TPEPTR ddPTM_HeLa_A485_30min_R1 3 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 ASST(0.001)S(0.67)T(0.329)PEPTR;ASST(0.001)S(0.611)T(0.388)PEPTR;ASS(0.016)T(0.258)S(0.492)T(0.234)PEPTR ;; 215.77 1.01E-17 820590000 782690 979060 1046620 830460 1248190 937910 1104830 1032580 1033320 1230680 TRUE FALSE FALSE 956796.6903 1093552.55 1433808.291 875825.927 1123915.821 987017.5173 868774.0449 779338.136 1240697.846 923894.125 1.035612918 1.183634056 1.551918399 0.947972179 1.216498504 1.068323188 0.940339398 0.843536196 1.34290046 1 19.81736801 -5.928220668 1.409701689 1.024640053 1.224016865 0.126743244 0.189590506 0.779238542 3.211127402 0.076981955 0.092008516 1.18E-06 5.928220668 0.199376813 ASSTS(ph)TPEPTR ddPTM_HeLa_A486_30min_R1 3 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 ASSTS(0.666)T(0.334)PEPTR;ASST(0.003)S(0.703)T(0.294)PEPTR;ASST(0.003)S(0.622)T(0.375)PEPTR ;; 210.95 3.57E-15 8355093000 8857440 10389520 9455770 3058385 11456620 8889210 9653710 10521770 8763110 9183020 TRUE FALSE FALSE 8236579.196 9566216.597 13117297.38 7120074.842 10019623.89 7792549.649 7238249.651 8126192.66 9522703.431 6883532.021 1.196562923 1.389725009 1.905605631 1.034363583 1.455593416 1.132056861 1.05153134 1.180526601 1.383403666 1 22.71471759 -5.310619799 24.99999795 1.188838951 1.486543132 0.317994103 0.214419903 464.4657352 236101.9484 0.060339252 0.0894978 4.89E-06 5.310619799 0.297704181 ASSTST(ph)PEPTR ddPTM_HeLa_A485_30min_R1 3 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 ASST(0.001)S(0.028)T(0.97)PEPTR;ASST(0.001)S(0.155)T(0.844)PEPTR;AS(0.001)S(0.016)T(0.206)S(0.206)T(0.57)PEPTR ;; 193.28 2.17E-10 8457320000 3215790 3803270 4334380 3410590 4871170 3618650 4488920 3947690 3909380 4817580 TRUE FALSE FALSE 3931131.391 4248029.342 5937847.531 3596901.896 4386179.211 3808116.919 3529825.571 2979512.838 4693956.707 3616645.967 1.086954993 1.174577048 1.641810557 0.994540779 1.212775387 1.05294158 0.975994223 0.82383315 1.297875642 1 21.78622095 -5.913617553 1.492791044 1.015764241 1.268079672 0.205909752 0.190981536 0.589949517 2.717806533 0.075151407 0.090222782 1.22E-06 5.913617553 0.252315431 ASSTST(ph)PEPTR ddPTM_HeLa_A486_30min_R1 4 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 ASST(0.001)S(0.016)T(0.983)PEPTR;AS(0.004)S(0.007)T(0.002)S(0.166)T(0.821)PEPTR;ASST(0.008)S(0.123)T(0.868)PEPTR;ASST(0.012)S(0.039)T(0.949)PEPTR ;;; 218.94 4.22E-22 9092310000 8089390 9884290 8719840 2755541 11533910 8835230 9467710 9882070 7965550 9525850 TRUE FALSE FALSE 7522365.535 9101022.862 12096395.57 6415038.705 10087219.46 7745229.153 7098788.819 7632138.385 8656010.288 7140515.157 1.053476587 1.274561101 1.694050822 0.898399984 1.412673909 1.084687727 0.994156397 1.068849826 1.212238907 1 22.76759673 -6.380302035 8.278008288 1.069822423 1.270117905 0.185567101 0.203985176 0.530094776 34.12775839 0.071254665 0.062751029 4.17E-07 6.380302035 0.200295482 ASSTST(ph)PEPTRKPWER ddPTM_HeLa_A485_30min_R1 2 ASSTSTPEPTRKPWER 16 2 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 AS(0.008)S(0.007)T(0.034)S(0.034)T(0.918)PEPTRKPWER;AS(0.005)S(0.029)T(0.029)S(0.234)T(0.703)PEPTRKPWER ; 83.792 0.0022441 1716440000 520710 1563030 746830 311490 1187040 1908460 2088260 4739500 685530 556690 TRUE FALSE FALSE 636540.1431 1745812.762 1023113.495 328505.91 1068854.13 2008384.015 1642086.191 3577130.194 823109.5829 417917.4281 1.523124187 4.177410762 2.448123544 0.786054584 2.55757252 4.805695765 3.929212043 8.559418567 1.969550747 1 18.6728584 -6.221779526 6.209417609 4.518308663 2.315225619 0.135911415 2.052501894 0.330188077 36.53229937 0.665034038 0.656061347 6.00E-07 6.221779526 -2.203083044 ASSTST(ph)PEPTRKPWER ddPTM_HeLa_A486_30min_R1 1 ASSTSTPEPTRKPWER 16 2 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 AS(0.016)S(0.106)T(0.106)S(0.106)T(0.667)PEPTRKPWER 68.567 0.0093603 517350000 354600 257430 201640 134900 532150 226550 382130 445660 152690 435310 TRUE FALSE FALSE 329744.3712 237030.3093 279720.4081 314054.0175 465402.7849 198600.5644 286517.0322 344192.9467 165925.2921 326305.5426 1.010538676 0.726406016 0.857234621 0.962453825 1.426279128 0.608633745 0.878063639 1.05481796 0.508496702 1 18.31586397 ASSVGVLS(ph)PQKK ddPTM_HeLa_A485_30min_R1 1 ASSVGVLSPQKK 12 1 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 0 ASSVGVLS(1)PQKK 90.754 0.0012315 1101000000 878670 710940 493120 1214600 847010 905050 1393900 1360500 682520 1629100 TRUE FALSE FALSE 1074127.11 794078.2486 675545.6084 1280950.522 762678.7104 952437.0185 1096081.878 1026835.242 819495.5036 1222995.351 0.87827571 0.64928967 0.552369727 1.047387892 0.62361538 0.77877403 0.896227346 0.839606823 0.67007246 1 20.22198749 -14 0.195619771 1.995337335 0.732382529 0.177575281 0.143452637 240.7423782 2.370882719 93.81459078 0.360387202 1.00E-14 14 -1.262954805 ASSVGVLS(ph)PQKK ddPTM_HeLa_A486_30min_R1 2 ASSVGVLSPQKK 12 1 Q9UGU5 Q9UGU5 HMGXB4 HMG domain-containing protein 4 1 0 ASSVGVLS(1)PQKK;ASSVGVLS(1)PQKK ; 103.5 0.00040893 1930450000 2228100 2079500 928360 984080 1626200 2206990 2907100 2474900 1748220 3381600 TRUE FALSE FALSE 2071921.696 1914712.847 1287845.854 2290987.973 1422226.832 1934714.013 2179712.832 1911419.297 1899757.117 2534825.349 0.817382427 0.755362829 0.508060981 0.903805058 0.561074881 0.763253379 0.859906515 0.754063509 0.749462726 1 21.27345492 -10.15479362 0.312646964 1.156003397 0.709971045 0.321491322 0.114805206 19.33422955 1.425647382 2.690094262 0.114973624 7.00E-11 10.15479362 -0.446032352 ASSVS(ph)TKESPARK ddPTM_HeLa_A485_30min_R1 1 ASSVSTKESPARK 13 2 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ASSVS(0.366)T(0.366)KES(0.267)PARK 105.81 0.00029576 741510000 335470 309370 202720 437680 392570 365970 606910 627000 294360 587790 TRUE FALSE FALSE 410094.1441 345548.1303 277714.5639 461589.3501 353484.3524 385131.6233 477238.7205 473227.2669 353435.352 441264.7705 0.929360719 0.783085697 0.629360381 1.046059829 0.801070867 0.872790327 1.081524637 1.072433828 0.800959822 1 18.75128505 -6.599731553 6.767295465 0.99404949 0.834929437 0.254058119 0.122783328 0.30170861 21.63611686 0.047440985 0.036618556 2.51E-07 6.599731553 -0.159120053 ASSVSTKES(ph)PAR ddPTM_HeLa_A485_30min_R1 11 ASSVSTKESPAR 12 1 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AS(0.017)S(0.015)VS(0.055)T(0.048)KES(0.865)PAR;ASSVS(0.003)T(0.006)KES(0.99)PAR;ASSVST(0.005)KES(0.994)PAR;ASS(0.001)VS(0.007)T(0.007)KES(0.985)PAR;ASSVS(0.001)T(0.033)KES(0.966)PAR;ASSVST(0.002)KES(0.997)PAR;ASS(0.001)VS(0.074)T(0.322)KES(0.603)PAR;ASS(0.001)VS(0.007)T(0.066)KES(0.926)PAR;ASSVS(0.004)T(0.004)KES(0.991)PAR;ASSVST(0.005)KES(0.995)PAR;ASSVST(0.002)KES(0.998)PAR ;;;;;;;;;; 226.62 4.11E-22 21644570000 9617605 9587691 8762422 12325770 13180660 11471620 15665370 16424940 9960967 16758170 TRUE FALSE FALSE 11757008.05 10708888.06 12004006.53 12999095.6 11868347.21 12072256.28 12318335.73 12396697.71 11960041.71 12580666.63 0.934529814 0.851217855 0.954162994 1.033259682 0.943379835 0.959587965 0.979148092 0.985376855 0.95066836 1 23.58470503 -4.935943049 7.022569378 0.977242855 0.894029552 0.550378583 0.030617932 0.148377447 13.20703253 0.007673302 0.016136092 1.16E-05 4.935943049 -0.083213303 ASSVSTKES(ph)PAR ddPTM_HeLa_A486_30min_R1 8 ASSVSTKESPAR 12 1 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ASSVSTKES(0.999)PAR;ASSVS(0.028)T(0.028)KES(0.943)PAR;ASSVST(0.001)KES(0.999)PAR;ASSVST(0.001)KES(0.999)PAR;ASSVS(0.001)T(0.005)KES(0.994)PAR;ASS(0.003)VS(0.003)T(0.111)KES(0.884)PAR;ASSVSTKES(1)PAR;AS(0.007)S(0.006)VS(0.039)T(0.035)KES(0.914)PAR ;;;;;;; 196.48 3.09E-13 18578150000 11601600 12473080 7684093 5401012 12838430 13211680 15831250 15776980 10004800 15100110 TRUE FALSE FALSE 10788387.75 11484667.71 10659579.6 12573828.89 11228114.4 11581757.25 11870103.8 12184906.06 10872024.12 11318944.17 0.953126686 1.014641255 0.941746813 1.110865881 0.99197542 1.023218869 1.048693555 1.076505536 0.960515747 1 23.43223605 -5.223976265 24.99989245 1.032321657 0.974318557 0.280428609 0.044087244 751.1236675 501238.8474 0.011349547 0.019657547 5.97E-06 5.223976265 -0.0580031 ASSVSTKES(ph)PARK ddPTM_HeLa_A485_30min_R1 4 ASSVSTKESPARK 13 2 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ASSVSTKES(1)PARK;ASSVS(0.051)T(0.051)KES(0.898)PARK;AS(0.003)S(0.003)VS(0.007)T(0.007)KES(0.98)PARK;ASSVSTKES(1)PARK ;;; 136.34 4.34E-06 17519150000 2515710 2414850 1630290 3167900 3378100 3326700 4387640 4836270 2446630 4785830 TRUE FALSE FALSE 3075321.01 2697245.701 2233402.113 3340954.355 3041764.503 3500880.868 3450184.87 3650167.2 2937646.199 3592810.658 0.855965233 0.750734163 0.621630897 0.929899923 0.846625328 0.974412849 0.960302448 1.015964254 0.817645704 1 21.77668148 -5.296556948 19.74257769 0.934661257 0.743572904 0.555253099 0.078826264 34.94575649 19645.67873 0.022211736 0.032953207 5.05E-06 5.296556948 -0.191088353 ASSVSTKES(ph)PARK ddPTM_HeLa_A486_30min_R1 8 ASSVSTKESPARK 13 2 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ASSVSTKES(1)PARK;ASSVSTKES(1)PARK;ASSVS(0.313)T(0.313)KES(0.375)PARK;ASSVSTKES(1)PARK;ASSVSTKES(1)PARK;ASSVS(0.001)TKES(0.999)PARK;ASSVS(0.077)T(0.1)KES(0.822)PARK;ASSVS(0.033)T(0.033)KES(0.934)PARK ;;;;;;; 130.29 9.43E-06 30469480000 18269040 16637000 8383380 9068980 16829620 19118090 24888760 23758970 12541120 24363870 TRUE FALSE FALSE 16988474.64 15318623.53 11629649.25 21113043.76 14718692.13 16759494.43 18661329 18349571.19 13628194.38 18262998.37 0.930212788 0.83877922 0.63678751 1.156055722 0.805929663 0.917674858 1.021810801 1.00474034 0.74621889 1 24.12242031 -5.250972812 24.99186476 0.946143609 0.805611807 0.221842666 0.127157454 1156.229322 2760816.389 0.033851198 0.057840515 5.61E-06 5.250972812 -0.140531802 AST(ph)PDWVSEGPQPGLR ddPTM_HeLa_A485_30min_R1 5 ASTPDWVSEGPQPGLR 16 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.125)T(0.875)PDWVSEGPQPGLR;AS(0.001)T(0.999)PDWVSEGPQPGLR;AST(1)PDWVSEGPQPGLR;AS(0.001)T(0.999)PDWVSEGPQPGLR;AS(0.014)T(0.986)PDWVSEGPQPGLR ;;;; 336.95 3.58E-90 3300157000 1405168 1272486 1192956 1636142 1750455 1395960 1781908 1575322 1377359 2219690 TRUE FALSE FALSE 1717742.774 1421292.169 1634280.067 1725520.295 1576173.554 1469050.307 1401188.799 1188971.809 1653782.317 1666362.133 1.030834018 0.852931149 0.980747243 1.035501384 0.945876963 0.881591269 0.840866923 0.713513459 0.992450731 1 20.66827053 -6.252647481 3.50533653 0.863211284 0.968768902 0.161934238 0.089674675 0.366064774 9.707535366 0.031591519 0.029668098 5.59E-07 6.252647481 0.105557617 AST(ph)PDWVSEGPQPGLR ddPTM_HeLa_A486_30min_R1 3 ASTPDWVSEGPQPGLR 16 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.002)T(0.998)PDWVSEGPQPGLR;AS(0.002)T(0.998)PDWVSEGPQPGLR;AST(1)PDWVSEGPQPGLR ;; 325.24 1.49E-78 2479090000 722080 892550 681950 302710 961750 881480 983680 1004440 718910 872710 TRUE FALSE FALSE 671465.9208 821821.0874 946019.3033 704724.1781 841118.347 772731.9598 737552.8597 775750.9388 781225.6976 654177.7356 1.026427352 1.256265756 1.446119689 1.07726714 1.285764252 1.181226321 1.127450262 1.185841242 1.194210159 1 19.31932313 -9.800581708 0.334427777 0.912200386 1.225320434 0.224920662 0.110425142 17.4597948 1.717838478 1.66509996 0.101598672 1.58E-10 9.800581708 0.313120048 AST(ph)PDWVSEGPQPGLRR ddPTM_HeLa_A485_30min_R1 1 ASTPDWVSEGPQPGLRR 17 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.43)T(0.569)PDWVS(0.002)EGPQPGLRR 118.21 2.16E-06 0 140160 156100 133310 119290 212230 202000 240200 283570 139320 183230 TRUE FALSE FALSE 171338.1085 174354.5371 182626.9165 125806.5106 191099.636 212576.4076 188879.3077 214024.0129 167280.2461 137554.1331 1.245604945 1.267533975 1.327673058 0.914596369 1.389268586 1.54540182 1.373127099 1.555925715 1.216104833 1 17.06963996 AST(ph)PQPAPAGVPALASQHPPEEEVHYHLPVAR ddPTM_HeLa_A486_30min_R1 2 ASTPQPAPAGVPALASQHPPEEEVHYHLPVAR 32 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 AS(0.483)T(0.517)PQPAPAGVPALASQHPPEEEVHYHLPVAR;AS(0.485)T(0.515)PQPAPAGVPALASQHPPEEEVHYHLPVAR ; 54.389 0.0079307 964960000 244910 267980 232510 6955.6 302660 183090 210070 190969 202845 102902 TRUE FALSE FALSE 227743.0737 246744.2888 322544.0988 16192.98832 264697.5606 160502.2173 157508.2641 147489.5275 220427.7679 77134.66942 2.952538404 3.198876597 4.181571027 0.209931389 3.431628898 2.080805149 2.041990525 1.912104228 2.8577003 1 16.23509183 -1 0.076058853 3.40E-11 8.471653751 0.222264064 0.990471865 333.5277968 1.863111209 33.16677155 298.7814711 0.1 1 8.471653751 AST(ph)PVLK ddPTM_HeLa_A486_30min_R1 1 ASTPVLK 7 0 A0A669KBK8;Q04724;F6T2C8;A0A669KAE5 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 AS(0.079)T(0.921)PVLK 88.819 0.034308 140470000 965170 906000 454470 314600 868040 842720 1009500 1027200 697530 1135100 TRUE FALSE FALSE 897516.5671 834205.2604 630452.9551 732404.699 759162.329 738753.7745 756912.4226 793328.9836 757992.462 850863.5717 1.054830171 0.980421877 0.740956572 0.860778065 0.89222568 0.868239985 0.889581418 0.932380948 0.890850763 1 19.6985683 -9.624231895 10.30983466 1.000001494 0.89692297 0.126314253 0.077286182 0 0 0.078501082 0.019039309 2.38E-10 9.624231895 -0.103078523 ASTAS(ph)PCNNNINAATAVALQEPR ddPTM_HeLa_A485_30min_R1 1 ASTASPCNNNINAATAVALQEPR 23 0 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4 Q71RC2-6 LARP4 La-related protein 4 1 0 AS(0.022)T(0.136)AS(0.842)PCNNNINAATAVALQEPR 262.19 2.03E-61 356760000 74623 97797 121730 69527 127780 111900 110230 133520 88355 109440 TRUE FALSE FALSE 91222.6289 109233.5084 166762.9926 73325.08396 115057.7745 117758.911 86678.46 100774.0106 106087.0381 82158.62209 1.110323257 1.329544065 2.029768615 0.89248191 1.400434569 1.433311659 1.055013555 1.226578636 1.291246559 1 16.32612437 -7.688974083 0.36627243 0.996275076 1.41249719 0.115420864 0.284261118 2.819317241 1.159770823 0.440340401 0.30872291 2.05E-08 7.688974083 0.416222114 ASTAS(ph)PCNNNINAATAVALQEPR ddPTM_HeLa_A486_30min_R1 1 ASTASPCNNNINAATAVALQEPR 23 0 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4 Q71RC2-6 LARP4 La-related protein 4 1 0 AS(0.009)T(0.043)AS(0.948)PCNNNINAATAVALQEPR 231.29 7.62E-39 301820000 96362 107850 89631 39702 119370 101620 103490 98662 79275 103020 TRUE FALSE FALSE 89607.52141 99303.57322 124338.5236 92428.26243 104397.5015 89083.1576 77595.70739 76198.81638 86146.62083 77223.12145 1.160371657 1.285930578 1.610120405 1.196898813 1.351894349 1.153581413 1.004824798 0.986735772 1.115554761 1 16.23674525 -6.46599751 2.761704254 1.025797227 1.329458151 0.579616286 0.118013582 0.203318246 3.070541445 0.048324136 0.039539536 3.42E-07 6.46599751 0.303660924 ASTSSSSSSSSNQQTEKETNT(ph)PK ddPTM_HeLa_A485_30min_R1 3 ASTSSSSSSSSNQQTEKETNTPK 23 1 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 0 ASTSSSSSSSSNQQT(0.005)EKET(0.077)NT(0.918)PK;ASTSSSSSSSSNQQTEKET(0.205)NT(0.795)PK;ASTSSSSSSSSNQQTEKET(0.045)NT(0.955)PK ;; 251.07 1.34E-49 1424550000 377789 235064 198454 763580 502490 431150 884280 757200 285523 1099610 TRUE FALSE FALSE 461826.8597 262552.69 271870.393 805292.4419 452460.3313 453724.3473 695346.3541 571495.5128 342824.8471 825497.4638 0.559452791 0.318053903 0.329341282 0.975523823 0.548106265 0.549637482 0.842336148 0.692304383 0.415294852 1 19.65490426 -14 0.060496171 2.372970293 1.95E-12 0.294412822 0.198194034 529.3549053 2.332730681 109.6868135 17.98481795 1.00E-14 14 -2.372970293 ASTSSSSSSSSNQQTEKETNT(ph)PK ddPTM_HeLa_A486_30min_R1 2 ASTSSSSSSSSNQQTEKETNTPK 23 1 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 0 ASTSSSSSSSSNQQTEKET(0.024)NT(0.976)PK;ASTSSSSSSSSNQQTEKETNT(1)PK ; 209.89 4.37E-29 838300000 429710 385160 159612 421160 407000 556320 847590 780780 297210 905100 TRUE FALSE FALSE 399589.548 354638.5189 221418.041 980481.7642 355950.2649 487686.8946 635514.0171 603013.4383 322972.4021 678457.0688 0.588968067 0.522713279 0.326355272 1.445164048 0.524646704 0.718817619 0.936704836 0.888801173 0.476039556 1 19.371898 ASTVS(ph)PGGYMVPK ddPTM_HeLa_A485_30min_R1 2 ASTVSPGGYMVPK 13 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 AST(0.003)VS(0.996)PGGYMVPK;AS(0.081)T(0.081)VS(0.838)PGGYMVPK ; 127.56 2.63E-05 632630000 849050 870810 754080 966580 1063080 970350 1179180 1198650 765400 1213060 TRUE FALSE FALSE 1037918.243 972643.6545 1033045.572 1019381.818 957236.0225 1021156.026 927238.56 904679.2081 919008.7593 910666.4667 1.139734778 1.068056956 1.134384113 1.119379987 1.051137884 1.121328239 1.018197764 0.99342541 1.009160645 1 19.79656324 -6.835152735 5.206923236 1.002293861 1.103372094 0.77468175 0.026592545 0.096305991 4.7009176 0.011084753 0.007459119 1.46E-07 6.835152735 0.101078233 ASTVS(ph)PGGYMVPK ddPTM_HeLa_A486_30min_R1 2 ASTVSPGGYMVPK 13 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 AST(0.001)VS(0.999)PGGYMVPK;ASTVS(1)PGGYMVPK ; 247.14 2.68E-35 585610000 1093310 1026090 697680 369260 1108930 954150 1128050 1139220 872330 1160280 TRUE FALSE FALSE 1016674.615 944778.8914 967840.3805 859655.9414 969837.659 836436.6741 845799.9587 879844.475 947944.2668 869738.3358 1.168943087 1.086279462 1.112794895 0.988407554 1.115091309 0.961710712 0.972476346 1.011619747 1.089918919 1 19.7302219 -4.358933779 0.679030526 1.012587992 1.241189272 0.482487638 0.049215283 2.45907402 0.942670838 0.022218844 0.426952849 4.38E-05 4.358933779 0.22860128 ASVALT(ph)PTAPSR ddPTM_HeLa_A485_30min_R1 4 ASVALTPTAPSR 12 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 ASVALT(0.997)PT(0.003)APSR;ASVALT(0.998)PT(0.002)APSR;ASVALT(0.999)PT(0.001)APSR;ASVALT(0.998)PT(0.002)APSR ;;; 210.73 7.42E-17 2935360000 1919650 2926880 3059740 2198190 3115480 2807450 3092290 3500050 2580140 3159900 TRUE FALSE FALSE 2346669.52 3269153.156 4191665.152 2318271.554 2805291.872 2954443.741 2431596.98 2641657.25 3097950.432 2372195.084 0.989239686 1.378113115 1.766998499 0.977268509 1.182572163 1.245447207 1.025040898 1.113591908 1.305942523 1 21.17779123 -5.325475742 24.99999777 1.129843467 1.378130815 0.255878104 0.20024905 290.182984 113287.5527 0.056767193 0.084199366 4.73E-06 5.325475742 0.248287348 ASVALT(ph)PTAPSR ddPTM_HeLa_A486_30min_R1 4 ASVALTPTAPSR 12 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 AS(0.001)VALT(0.972)PT(0.026)APSR;ASVALT(0.976)PT(0.024)APSR;ASVALT(0.996)PT(0.004)APSR;ASVALT(1)PTAPSR ;;; 243.3 3.26E-27 2947350000 2986370 3093700 2580660 1297850 3617030 2769530 3105730 3086960 2531840 3927370 TRUE FALSE FALSE 2777040.885 2848543.945 3579960.664 3021460.39 3163348.37 2427853.547 2328643.505 2384126.596 2751301.93 2943930.989 0.943310456 0.96759875 1.216047753 1.026335332 1.074532107 0.824697847 0.790997993 0.809844594 0.9345674 1 21.48931242 -6.260460645 24.99956462 0.855072876 1.049636396 0.475771224 0.090159827 73.11769406 1867643.454 0.031191095 0.029519397 5.49E-07 6.260460645 0.19456352 ASVALTPTAPS(ph)R ddPTM_HeLa_A485_30min_R1 6 ASVALTPTAPSR 12 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 ASVALTPTAPS(1)R;ASVALTPTAPS(1)R;ASVALTPT(0.001)APS(0.999)R;ASVALTPTAPS(1)R;ASVALTPTAPS(1)R;ASVALTPT(0.003)APS(0.997)R ;;;;; 153.22 8.91E-08 3173130000 3119390 3024470 2996340 3558650 3494040 2631370 3776370 3506310 2822330 4615340 TRUE FALSE FALSE 3813287.544 3378155.457 4104810.854 3753050.039 3146161.109 2769144.464 2969517.699 2646381.975 3388745.743 3464820.677 1.100572843 0.974987098 1.184710909 1.083187382 0.908029997 0.799217253 0.85704802 0.76378613 0.978043616 1 21.72434926 -5.817767193 4.226748327 0.862951839 1.086197215 0.584663295 0.08277971 0.138628853 5.039803749 0.025281767 0.029767732 1.52E-06 5.817767193 0.223245376 ASVALTPTAPS(ph)R ddPTM_HeLa_A486_30min_R1 3 ASVALTPTAPSR 12 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 ASVALTPTAPS(1)R;ASVALTPTAPS(1)R;ASVALTPTAPS(1)R ;; 131.36 2.65E-05 2456130000 2047540 2534310 1749640 771820 2050120 2355550 2593010 2662980 1842240 2346270 TRUE FALSE FALSE 1904018.02 2333482.046 2427147.465 1796835.966 1792974.833 2064946.19 1944211.472 2056677.586 2001926.847 1758748.72 1.082598098 1.326785355 1.380042207 1.021655877 1.01946049 1.174099612 1.105451535 1.169398199 1.138267692 1 20.74611794 -5.268462239 24.95640676 1.098058752 1.269506235 0.424953305 0.091982235 519.0783824 1844595.926 0.026352131 0.040035855 5.39E-06 5.268462239 0.171447483 ASVLDTSMSAGSGS(ph)PSK ddPTM_HeLa_A485_30min_R1 11 ASVLDTSMSAGSGSPSK 17 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDTSMSAGS(0.006)GS(0.993)PS(0.001)K;ASVLDTSMSAGS(0.004)GS(0.988)PS(0.008)K;ASVLDTSMSAGS(0.003)GS(0.996)PS(0.001)K;ASVLDTSMSAGS(0.006)GS(0.993)PS(0.001)K;ASVLDTSMSAGS(0.007)GS(0.993)PSK;ASVLDTSMSAGS(0.035)GS(0.962)PS(0.003)K;ASVLDTSMSAGSGS(1)PSK;ASVLDTSMSAGSGS(0.999)PS(0.001)K;ASVLDTSMSAGS(0.008)GS(0.991)PS(0.001)K;ASVLDTSMSAGS(0.002)GS(0.998)PSK;ASVLDTSMSAGS(0.015)GS(0.984)PS(0.001)K ;;;;;;;;;; 368.13 1.46E-119 11757980000 3565352 3087370 2595992 5210630 4061460 3433139 4910420 4375620 3281064 6564650 TRUE FALSE FALSE 4358452.252 3448411.065 3556357.469 5495273.523 3657086.782 3612892.849 3861268.653 3302492.334 3939543.449 4928203.568 0.884389655 0.699729834 0.721633638 1.11506626 0.742072995 0.733105441 0.783504293 0.670120925 0.799387321 1 22.23263042 ASVLDTSMSAGSGS(ph)PSK ddPTM_HeLa_A486_30min_R1 14 ASVLDTSMSAGSGSPSK 17 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDTSMSAGSGS(1)PSK;ASVLDTSMSAGS(0.058)GS(0.942)PSK;ASVLDTSMSAGSGS(0.999)PS(0.001)K;ASVLDTSMSAGS(0.009)GS(0.987)PS(0.004)K;ASVLDTSMSAGSGS(1)PSK;ASVLDTSMSAGS(0.002)GS(0.996)PS(0.002)K;ASVLDTSMSAGSGS(1)PSK;ASVLDTSMSAGS(0.001)GS(0.999)PSK;ASVLDTSMSAGSGS(1)PSK;ASVLDTSMSAGSGS(1)PSK;ASVLDTSMSAGS(0.002)GS(0.985)PS(0.012)K;ASVLDTSMSAGS(0.004)GS(0.996)PSK;ASVLDTSMSAGS(0.03)GS(0.935)PS(0.035)K;ASVLDTSMSAGS(0.032)GS(0.965)PS(0.003)K ;;;;;;;;;;;;; 554.33 0 12013610000 5747911 5870006 3509592 2800448 5311308 6288717 7714270 7236432 4660514 8216120 TRUE FALSE FALSE 5345012.121 5404845.346 4868600.013 6519584.471 4645114.225 5512879.036 5784078.053 5588854.404 5064491.106 6158750.074 0.867872873 0.87758803 0.790517549 1.058588901 0.754230025 0.895129526 0.939164276 0.907465693 0.822324505 1 22.55420615 -11.0220583 2.945773569 1.137952202 0.881215533 0.170492351 0.079820311 21545956.6 26338452.64 20263254.98 0.018904285 9.50E-12 11.0220583 -0.256736669 ASVLDTSMSAGSGS(ph)PSKTVTPK ddPTM_HeLa_A485_30min_R1 2 ASVLDTSMSAGSGSPSKTVTPK 22 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDTSMSAGSGS(0.999)PS(0.001)KTVTPK;ASVLDTSMSAGS(0.001)GS(0.993)PS(0.006)KTVTPK ; 322.34 4.06E-103 2383200000 811090 1146260 576610 770300 1642550 1778350 2696200 4413400 918970 1322100 TRUE FALSE FALSE 991514.1723 1280305.136 789922.0337 812379.5385 1479011.955 1871461.656 2120134.844 3331006.73 1103398.85 992524.8014 0.998981759 1.289947751 0.79587133 0.818497973 1.49015113 1.885556566 2.136102635 3.356094201 1.111709096 1 19.92074363 -6.110066383 2.358751787 2.078390351 0.988638086 0.304658244 0.626971896 0.317426825 3.470628086 0.22393944 0.22801544 7.76E-07 6.110066383 -1.089752265 ASVLDTSMSAGSGS(ph)PSKTVTPK ddPTM_HeLa_A486_30min_R1 2 ASVLDTSMSAGSGSPSKTVTPK 22 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDTSMSAGS(0.001)GS(0.966)PS(0.033)KTVTPK;ASVLDTSMSAGS(0.002)GS(0.986)PS(0.012)KTVTPK ; 281.11 1.85E-73 1632210000 1456750 739270 554970 741720 1507420 927030 1727910 1928520 476920 1742620 TRUE FALSE FALSE 1354639.348 680687.5528 769869.2466 1726761.644 1318345.327 812662.464 1295568.642 1489438.095 518259.8096 1306256.609 1.037039229 0.521097882 0.589370604 1.321916101 1.009254474 0.622130796 0.991817865 1.140233921 0.396751914 1 20.31700691 ASVLFDTMQHHLALNR ddPTM_HeLa_A485_30min_R1 1 ASVLFDTMQHHLALNR 16 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 0 0 60.918 0.021972 7238800 7863.6 8573.6 10564 7270.3 12107 10492 11016 13001 8350.6 11350 FALSE FALSE TRUE 9612.830691 9576.20794 14472.0632 7667.45808 10901.58457 11041.3449 8662.341608 9812.484365 10026.48882 8520.653881 1.128179929 1.123881814 1.698468616 0.899867333 1.279430513 1.295833049 1.016628739 1.151611661 1.176727627 1 13.05674843 -7.72407576 0.39173219 0.998839542 1.256855394 0.103188447 0.197794743 2.841466267 1.275564661 0.277769988 0.182851077 1.89E-08 7.72407576 0.258015853 ASVS(ph)GPNS(ph)PSETR ddPTM_HeLa_A485_30min_R1 1 ASVSGPNSPSETR 13 0 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.006)VS(0.994)GPNS(0.868)PS(0.132)ETR 63.025 0.010416 0 333660 343070 367750 399990 422130 316420 352650 354970 308980 450100 TRUE FALSE FALSE 407881.5159 383189.0522 503796.0284 421840.4409 380101.255 332987.2619 277303.4466 267913.0509 370989.4519 337898.3535 1.207113061 1.134036459 1.490969172 1.248424079 1.124898216 0.985465772 0.820671198 0.792880605 1.097932109 1 18.36622979 -6.110792654 2.137969046 0.912066661 1.275443261 0.637229122 0.117820197 0.201363394 1.816639534 0.045493076 0.046288241 7.75E-07 6.110792654 0.3633766 ASVS(ph)GPNS(ph)PSETRR ddPTM_HeLa_A485_30min_R1 1 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.003)VS(0.997)GPNS(0.937)PS(0.06)ET(0.003)RR 214.41 2.74E-23 1817800000 1115100 1480900 1453400 1012600 1734000 1492200 1630500 1897700 1284500 1361800 TRUE FALSE FALSE 1363150.148 1654078.373 1991073.141 1067915.774 1561356.872 1570329.285 1282130.355 1432286.1 1542287.368 1022328.322 1.333378053 1.617952215 1.947586796 1.044591792 1.527255812 1.536032262 1.254127786 1.40100403 1.508602799 1 19.96342716 -12.45563473 0.173659925 2.47E-09 1.587777746 0.282040906 0.224656586 95.85746483 1.484874945 35.49204534 0.828298078 3.50E-13 12.45563473 1.587777744 ASVS(ph)GPNS(ph)PSETRR ddPTM_HeLa_A486_30min_R1 2 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.021)VS(0.968)GPNS(0.918)PS(0.083)ET(0.01)RR;AS(0.019)VS(0.979)GPNS(0.912)PS(0.079)ET(0.011)RR ; 86.641 0.00043996 145610000 230753 287060 267190 90258 345750 255640 292780 311950 226874 273370 TRUE FALSE FALSE 214578.4063 264312.3201 370653.1236 210125.1854 302382.811 224101.736 219523.3473 240925.7948 246539.621 204916.3727 1.047151106 1.289854572 1.808801897 1.025419212 1.475640073 1.093625331 1.071282614 1.175727404 1.203123097 1 17.64467573 -6.282127342 24.40363337 1.117392808 1.336926463 0.211074622 0.212686371 1010.24964 1191691.778 0.07461066 0.065876977 5.22E-07 6.282127342 0.219533655 ASVS(ph)GPNSPS(ph)ETRR ddPTM_HeLa_A485_30min_R1 1 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.432)VS(0.568)GPNS(0.03)PS(0.956)ET(0.015)RR 202.49 3.45E-22 2185100000 1097900 1528000 1579700 1016600 1742300 1356800 1702900 1782900 1205900 1424600 TRUE FALSE FALSE 1342124.067 1706686.308 2164096.767 1072134.284 1568830.494 1427839.95 1339061.504 1345640.98 1447913.069 1069473.438 1.254939132 1.595819258 2.023516144 1.002487996 1.466918615 1.335086875 1.252075513 1.258227584 1.353856036 1 20.02846922 -7.20281414 0.224553732 0.935761304 1.66050416 0.243972327 0.245637041 3.51686485 0.778959702 0.854272147 1.020177268 6.27E-08 7.20281414 0.724742855 ASVS(ph)PMDEPVPDSESPIEK ddPTM_HeLa_A485_30min_R1 3 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AS(0.027)VS(0.973)PMDEPVPDSESPIEK;AS(0.141)VS(0.859)PMDEPVPDSESPIEK;AS(0.003)VS(0.997)PMDEPVPDSESPIEK ;; 307.92 1.62E-80 1077273000 1443598 1542841 1177590 1437482 1792297 1618178 1958280 1877840 1251460 2026350 TRUE FALSE FALSE 1764721.395 1723262.834 1613229.545 1516008.002 1613849.618 1702903.298 1539877.48 1417296.796 1502616.543 1521218.237 1.160071153 1.132817627 1.060485278 0.996574959 1.060892894 1.119433922 1.012265987 0.931685383 0.987771844 1 20.53679571 -1 0.264197296 0.976981106 2.287547122 0.589935063 0.044609214 39.65417247 0.550107547 0.060280401 23.5291151 0.1 1 1.310566017 ASVS(ph)PMDEPVPDSESPIEK ddPTM_HeLa_A486_30min_R1 2 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AS(0.035)VS(0.965)PMDEPVPDSESPIEK;AS(0.138)VS(0.862)PMDEPVPDSESPIEK ; 294.29 5.62E-78 183980000 309095 320064 208699 106348 349712 344485 379503 371916 266880 363480 TRUE FALSE FALSE 287429.0367 294700.963 289512.842 247583.5185 305847.86 301985.9432 284547.3354 287238.8457 290013.3733 272462.2421 1.054931628 1.081621294 1.06257968 0.90868928 1.122533007 1.108358871 1.044355112 1.054233583 1.064416746 1 18.05569679 -5.015363754 24.97721771 1.046481136 1.069232498 0.032883436 0.056128546 3100.52481 5040610.382 0.015687897 0.028277748 9.65E-06 5.015363754 0.022751362 ASVSGPNS(ph)PSETR ddPTM_HeLa_A485_30min_R1 2 ASVSGPNSPSETR 13 0 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 1 0 ASVSGPNS(0.975)PS(0.025)ETR;ASVSGPNS(0.967)PS(0.033)ETR ; 282.73 7.19E-49 667050000 475760 601900 600150 471880 675070 478780 576410 572320 529980 703770 TRUE FALSE FALSE 581591.1706 672286.9692 822170.4593 497657.6095 607857.6605 503848.1805 453255.2947 431957.6226 636342.1247 528333.0909 1.100803983 1.272468033 1.556159312 0.941939125 1.150519759 0.9536563 0.85789685 0.817585781 1.204433596 1 19.01108825 -5.28859107 24.72030378 0.981573007 1.306076243 0.484433743 0.151292762 524.0878848 477155.5513 0.043490972 0.064526479 5.15E-06 5.28859107 0.324503236 ASVSGPNS(ph)PSETR ddPTM_HeLa_A486_30min_R1 2 ASVSGPNSPSETR 13 0 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 1 0 ASVSGPNS(0.981)PS(0.019)ETR;ASVSGPNS(0.985)PS(0.015)ETR ; 218.21 5.55E-23 507390000 728550 896610 799930 214963 932450 794340 788120 797100 815270 710770 TRUE FALSE FALSE 677482.4072 825559.3582 1109684.319 500444.7276 815493.4262 696342.4071 590924.0401 615617.7306 885938.26 532788.5657 1.271578354 1.549506524 2.082785537 0.939293295 1.530613603 1.306977011 1.109115469 1.155463481 1.66283272 1 19.0232036 -5.27506854 24.987623 1.258960701 1.626111826 0.29006544 0.279596149 1014.807813 1860540.229 0.07766208 0.115885253 5.31E-06 5.27506854 0.367151126 ASVSGPNS(ph)PSETRR ddPTM_HeLa_A485_30min_R1 2 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 1 0 ASVSGPNS(0.991)PS(0.009)ETRR;ASVSGPNS(0.955)PS(0.045)ETRR ; 185.96 1.01E-17 4371400000 1128130 1439120 1516220 838180 1595540 1387570 1564340 1898300 1309400 1429960 TRUE FALSE FALSE 1379078.626 1607412.565 2077132.873 883967.651 1436682.435 1460221.02 1230105.98 1432738.949 1572184.569 1073497.288 1.284659627 1.49736062 1.934921397 0.823446562 1.338319575 1.360246584 1.145886434 1.334646081 1.464544519 1 20.03388712 -5.257346549 24.99999944 1.232515335 1.564818518 0.335058105 0.232529378 447.9409527 2736121.211 0.063486501 0.105100049 5.53E-06 5.257346549 0.332303182 ASVSGPNS(ph)PSETRR ddPTM_HeLa_A486_30min_R1 2 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 1 0 ASVSGPNS(0.954)PS(0.046)ETRR;ASVS(0.001)GPNS(0.66)PS(0.209)ET(0.13)RR ; 153.04 2.39E-08 2584440000 1045120 1144290 1017850 318490 1327800 923990 1080420 1089920 860710 1054090 TRUE FALSE FALSE 971862.485 1053612.293 1411988.779 741460.8156 1161254.943 809997.5082 810087.4885 841769.0088 935317.0358 790139.003 1.229989257 1.333451822 1.787013138 0.938392881 1.46968437 1.025132926 1.025246805 1.06534294 1.183737333 1 19.59174695 -5.983823859 1.233006658 1.06199218 1.39489132 0.296770941 0.209418493 0.568327862 1.808321048 0.090961095 0.1054561 1.04E-06 5.983823859 0.33289914 ASVSPMDEPVPDSES(ph)PIEK ddPTM_HeLa_A485_30min_R1 7 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDS(0.002)ES(0.998)PIEK;ASVSPMDEPVPDS(0.001)ES(0.999)PIEK;ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDSES(1)PIEK ;;;;;; 343.26 8.73E-103 3499030000 3023592 2976406 2425259 3987239 3828176 3332687 4744361 4688837 2943881 5303073 TRUE FALSE FALSE 3696179.609 3324470.79 3322463.228 4205051.77 3447029.356 3507181.338 3730689.514 3538892.374 3534690.914 3981114.497 0.928428361 0.835060331 0.83455606 1.056249895 0.86584532 0.880954652 0.937096765 0.888920019 0.887864671 1 21.92474093 ASVSPMDEPVPDSES(ph)PIEK ddPTM_HeLa_A486_30min_R1 8 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ASVSPMDEPVPDS(0.002)ES(0.998)PIEK;ASVSPMDEPVPDS(0.098)ES(0.902)PIEK;ASVSPMDEPVPDS(0.001)ES(0.999)PIEK;ASVSPMDEPVPDS(0.165)ES(0.835)PIEK;ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDSES(1)PIEK;ASVSPMDEPVPDSES(1)PIEK ;;;;;;; 367.44 7.75E-130 3525238000 4765355 4734812 2838088 2080418 4798765 5076440 6214202 5987396 3872179 6387912 TRUE FALSE FALSE 4431328.223 4359608.253 3937071.68 4843318.243 4196859.147 4450160.446 4659342.932 4624196.635 4207822.593 4788337.257 0.925441961 0.910463908 0.822221049 1.011482271 0.876475261 0.929374897 0.973060727 0.965720747 0.878764876 1 22.19109334 -13.99999991 0.078909456 1.248077582 0.845670751 0.178742822 0.051403216 436.6643446 2.439635338 19.07923481 1.834026774 1.00E-14 13.99999991 -0.40240683 ASVSQT(ph)SPQSASSPR ddPTM_HeLa_A485_30min_R1 1 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 ASVSQT(0.688)S(0.103)PQS(0.171)AS(0.032)S(0.006)PR 136.33 4.19E-05 369410000 249770 317180 347990 275690 391140 327150 371210 407620 320680 369120 TRUE FALSE FALSE 305330.4748 354271.4419 476725.9821 290750.2466 352196.7282 344279.0681 291897.951 307650.5559 385037.5345 277105.1772 1.101857706 1.278472837 1.720379197 1.049241482 1.270985739 1.242412977 1.053383246 1.110230271 1.389499606 1 18.08007414 ASVSQTS(ph)PQSASSPR ddPTM_HeLa_A485_30min_R1 3 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 ASVSQT(0.219)S(0.781)PQSASSPR;ASVSQT(0.015)S(0.504)PQS(0.041)AS(0.399)S(0.041)PR;ASVSQT(0.035)S(0.965)PQSASSPR ;; 353.26 3.50E-104 763920000 460312 643280 671210 525536 729130 617020 668700 788250 586430 698780 TRUE FALSE FALSE 562706.8163 718506.0002 919518.5104 554244.701 656535.2571 649326.2131 525826.7822 594930.4516 704121.1219 524587.0061 1.072666326 1.369660308 1.752842712 1.056535321 1.251527868 1.237785545 1.002363337 1.134093 1.342238968 1 19.00082255 ASVSQTS(ph)PQSASSPR ddPTM_HeLa_A486_30min_R1 3 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 ASVSQT(0.021)S(0.86)PQS(0.083)AS(0.028)S(0.008)PR;ASVSQT(0.108)S(0.809)PQS(0.033)AS(0.036)S(0.015)PR;ASVSQT(0.033)S(0.965)PQS(0.001)ASSPR ;; 278.24 2.58E-58 1033430000 681720 785870 691440 210332 884250 661480 735010 749950 608540 688000 TRUE FALSE FALSE 633934.9484 723594.7991 959184.0854 489663.5256 773339.1197 579873.323 551102.7239 579202.7563 661288.7372 515720.3219 1.229222355 1.403075986 1.85989197 0.949474948 1.499531988 1.124394945 1.068607733 1.123094692 1.282262322 1 18.97622937 -5.911113051 1.161596621 1.124606512 1.44311028 0.24164306 0.226515183 0.688972091 1.96940027 0.099699228 0.125612112 1.23E-06 5.911113051 0.318503768 ASWES(ph)LDEEWRAPQAGSR ddPTM_HeLa_A485_30min_R1 2 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 AS(0.062)WES(0.938)LDEEWRAPQAGSR;ASWES(0.89)LDEEWRAPQAGS(0.11)R ; 191.66 1.63E-18 349264000 94171 124756 125439 98799 150600 139467 132531 183002 128778 139796 TRUE FALSE FALSE 115119.0141 139345.129 171844.1061 104196.1392 135605.7352 146769.2765 104214.6692 138120.4726 154622.5634 104947.43 1.096920755 1.327761233 1.637430341 0.992841266 1.29213012 1.398502817 0.99301783 1.316091996 1.473333491 1 16.67930731 -5.277291957 24.96701384 1.224895664 1.35140988 0.093364313 0.202490593 2198.452594 3462447.993 0.057071116 0.084955445 5.28E-06 5.277291957 0.126514216 ASYDVSDSGQLEHVQPWS(ph)V ddPTM_HeLa_A485_30min_R1 2 ASYDVSDSGQLEHVQPWSV 19 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 ASYDVSDSGQLEHVQPWS(1)V;ASYDVSDSGQLEHVQPWS(1)V ; 162.77 2.40E-12 99728000 69437 87260 108167 86109 131887 83062 110349 104914 98618 136817 TRUE FALSE FALSE 84883.0211 97464.29794 148182.4745 90812.91663 118755.8672 87410.99788 86772.03468 79183.677 118409.728 102711.0398 0.826425487 0.948917449 1.442712242 0.884159257 1.15621327 0.851038 0.844817021 0.770936378 1.152843241 1 16.64823173 -6.271780919 24.8444501 0.904666081 1.058392894 0.100022963 0.186666356 1388.686894 3336160.727 0.065490005 0.058373672 5.35E-07 6.271780919 0.153726814 ASYDVSDSGQLEHVQPWS(ph)V ddPTM_HeLa_A486_30min_R1 2 ASYDVSDSGQLEHVQPWSV 19 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 ASYDVSDSGQLEHVQPWS(1)V;ASYDVSDSGQLEHVQPWS(1)V ; 148.52 1.76E-08 138877000 107983 157790 149858 39804 175081 138233 169169 158376 131361 112980 TRUE FALSE FALSE 100413.9493 145286.1457 207887.0309 92665.72358 153120.7084 121179.2179 126841.1269 122317.2421 142747.4772 84689.07262 1.185677753 1.715524108 2.454709026 1.094187487 1.808033831 1.430871943 1.497727192 1.444309618 1.685547767 1 16.36988821 -11.74238767 0.23064007 8.70E-09 1.690710383 0.193053546 0.359161026 80.30817614 2.033247107 40.56091533 0.657263897 1.81E-12 11.74238767 1.690710374 ASYNNPHR ddPTM_HeLa_A485_30min_R1 2 ASYNNPHR 8 0 A0A494C0B4;P54725-2;P54725;K7ELU6;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 0 0 ; ; 90.657 0.01337 46358000 38162 54851 56222 36676 52653 59161 58358 66013 47942 54077 FALSE FALSE TRUE 46651.00524 61265.34731 77020.85739 38679.51701 47410.68244 62258.57848 45889.33656 49823.20825 57563.51965 40596.59911 1.149135796 1.509125115 1.897224375 0.952777273 1.167848625 1.533590986 1.130373912 1.22727542 1.417939456 1 15.30907125 -13.7642897 0.1007981 1.03E-11 1.560100039 0.132670762 0.255678893 361.0629943 2.593251629 77.23628348 4.432005968 1.72E-14 13.7642897 1.560100039 ASYNNPHR ddPTM_HeLa_A486_30min_R1 2 ASYNNPHR 8 0 A0A494C0B4;P54725-2;P54725;K7ELU6;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 0 0 ; ; 103.56 0.0056531 26202000 46713 46243 51135 10733.7 59647 45422 45453 44675 45259 41918 FALSE FALSE TRUE 43438.65993 42578.53627 70935.84144 24988.59605 52165.51707 39818.29546 34080.17865 34503.47775 49182.08656 31421.45996 1.382451992 1.355078227 2.257560328 0.795271642 1.660187564 1.267232506 1.084614741 1.098086397 1.565238745 1 14.93946259 -5.279045622 24.98435469 1.230084041 1.634035127 0.278881287 0.333043233 1128.857478 1601916.526 0.091691627 0.136332323 5.26E-06 5.279045622 0.403951086 AT(ph)EDGEEDEEMIESIENLEDLKGHSVR ddPTM_HeLa_A485_30min_R1 1 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AT(1)EDGEEDEEMIESIENLEDLKGHSVR 196.45 1.42E-21 20459000 17984 15104 10262 19840 18651 20622 29112 24876 12982 28102 TRUE FALSE FALSE 21984.47876 16870.28141 14058.34084 20923.80896 16794.04095 21701.73603 22891.98338 18775.122 15587.36832 21096.68858 1.042081968 0.799664902 0.666376658 0.991805367 0.796051043 1.028679736 1.085098417 0.889955877 0.73885379 1 14.36472895 -6.253413881 24.82462399 0.950176111 0.852543711 0.103301906 0.130804127 1337.431762 4136971.506 0.045120444 0.044324622 5.58E-07 6.253413881 -0.0976324 AT(ph)NESEDEIPQLVPIGK ddPTM_HeLa_A485_30min_R1 3 ATNESEDEIPQLVPIGK 17 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.629)NES(0.371)EDEIPQLVPIGK;AT(0.595)NES(0.405)EDEIPQLVPIGK;AT(0.5)NES(0.5)EDEIPQLVPIGK ;; 143.4 1.06E-07 735881000 1138545 1155518 1011497 1348512 1624900 1331132 1731148 1978129 1311021 1974313 TRUE FALSE FALSE 1391810.407 1290645.778 1385691.832 1422177.796 1463119.251 1400828.013 1361274.088 1492989.761 1574130.889 1482153.104 0.939046313 0.870791132 0.934918146 0.959535012 0.987157971 0.945130439 0.918443637 1.007311429 1.062056872 1 20.49926305 -6.45444503 0.434662144 1.025670197 0.903035759 0.486398798 0.036476975 1.12878758 0.461409031 0.039925218 0.052534636 3.51E-07 6.45444503 -0.122634438 AT(ph)NESEDEIPQLVPIGK ddPTM_HeLa_A486_30min_R1 3 ATNESEDEIPQLVPIGK 17 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.5)NES(0.5)EDEIPQLVPIGK;AT(0.728)NES(0.272)EDEIPQLVPIGK;AT(0.615)NES(0.385)EDEIPQLVPIGK ;; 154.84 3.25E-08 2620220000 3128255 3524472 2460077 1337843 4056545 3591735 4262791 4156658 3128482 4039694 TRUE FALSE FALSE 2908980.479 3245180.003 3412684.698 3114566.115 3547735.3 3148623.254 3196195.605 3210277.713 3399661.339 3028128.328 0.960652972 1.071678493 1.12699474 1.028544955 1.171593445 1.039791882 1.055502032 1.060152465 1.122693945 1 21.52999492 -4.265949455 5.46549431 1.078859599 0.956546943 0.328262097 0.049007995 0.154184266 17.7078414 0.011460748 0.070611766 5.42E-05 4.265949455 -0.122312656 AT(ph)NSPKPHMVPR ddPTM_HeLa_A486_30min_R1 1 ATNSPKPHMVPR 12 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 AT(0.626)NS(0.374)PKPHMVPR 69.878 0.014648 444000000 219080 208500 106230 98409 224210 226290 302640 280200 177770 305380 TRUE FALSE FALSE 203723.6233 191977.7007 147365.1009 229101.1253 196087.4911 198372.6405 226916.271 216404.5767 193179.2467 228910.8603 0.889969235 0.838657023 0.643766315 1.000831175 0.856610695 0.866593399 0.991286611 0.945366141 0.843905992 1 17.80442639 -5.284647443 24.99713504 0.923901616 0.79558342 0.381768855 0.080457852 849.1451145 914602.4628 0.022670165 0.033649415 5.19E-06 5.284647443 -0.128318196 AT(ph)PAQT(ph)PR ddPTM_HeLa_A485_30min_R1 4 ATPAQTPR 8 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 2 0 AT(1)PAQT(1)PR;AT(1)PAQT(1)PR;AT(1)PAQT(1)PR;AT(1)PAQT(1)PR ;;; 92.247 0.0051761 3397180000 3213500 4064570 2777440 3589380 2679520 3949840 3145650 3535440 3977750 4347450 TRUE FALSE FALSE 3928331.989 4539886.104 3804930.635 3785458.741 2412737.58 4156647.515 2473556.18 2668367.797 4776047.939 3263710.724 1.203639759 1.391019759 1.165829621 1.159863438 0.739262081 1.273595568 0.757896882 0.817587103 1.463379675 1 21.63808176 -5.305192817 2.440061695 0.999949957 1.28403728 0.19389505 0.220358503 0.4398315 5.134726656 0.06426299 0.114148847 4.95E-06 5.305192817 0.284087322 AT(ph)PAQT(ph)PR ddPTM_HeLa_A486_30min_R1 3 ATPAQTPR 8 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 2 0 AT(1)PAQT(1)PR;AT(1)PAQT(1)PR;AT(1)PAQT(1)PR ;; 98.407 0.0036409 2342130000 2609200 1624950 2201630 668950 1623910 2616760 1963630 1631960 2864800 2786520 TRUE FALSE FALSE 2426308.554 1496183.044 3054160.098 1557349.407 1420224.065 2293930.756 1472309.005 1260398.333 3113123.171 2088757.255 1.161603891 0.716302979 1.462190061 0.745586594 0.679937347 1.098227547 0.704873197 0.603420206 1.490418843 1 20.99421341 AT(ph)PAQTPR ddPTM_HeLa_A485_30min_R1 4 ATPAQTPR 8 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 AT(1)PAQTPR;AT(1)PAQTPR;AT(1)PAQTPR;AT(0.999)PAQT(0.001)PR ;;; 123.51 0.0030753 7944240000 3257110 4227860 3950680 4072230 5065480 3667490 4342860 4136670 3647930 5000360 TRUE FALSE FALSE 3981642.883 4722271.45 5412200.934 4294685.613 4561143.025 3859514.105 3414972.483 3122145.196 4380036.09 3753862.277 1.060678999 1.257976745 1.441768646 1.144071172 1.215053374 1.028144833 0.909722369 0.831715435 1.166807881 1 21.83994429 -6.301458529 2.63236062 0.962244237 1.239520687 0.490438527 0.120717174 0.234223409 3.210518676 0.046796086 0.042210641 5.00E-07 6.301458529 0.277276451 AT(ph)PAQTPR ddPTM_HeLa_A486_30min_R1 2 ATPAQTPR 8 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 AT(1)PAQTPR;AT(1)PAQTPR ; 143.5 0.00079366 4397800000 3192180 4110670 3105730 1218830 4208340 3559460 3649670 3787610 3315700 3869850 TRUE FALSE FALSE 2968424.666 3784925.538 4308351.83 2837497.836 3680490.756 3120330.015 2736483.964 2925253.886 3603107.546 2900814.372 1.02330735 1.304780332 1.485221486 0.978172841 1.268778448 1.075673799 0.94335025 1.008425053 1.242102073 1 21.46802655 -5.995271627 1.350897177 1.048448014 1.2446013 0.189627625 0.153925545 0.673550266 2.541970093 0.06605999 0.074828778 1.01E-06 5.995271627 0.196153286 AT(ph)PPPS(ph)PLLSELLK ddPTM_HeLa_A486_30min_R1 1 ATPPPSPLLSELLK 14 0 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 2 0 AT(1)PPPS(1)PLLSELLK 80.706 0.011867 85556000 53377 54714 29564 24262 51226 63733 77376 64563 33259 69513 TRUE FALSE FALSE 49635.54794 50378.26338 41011.97255 56483.16213 44800.75742 55870.27045 58015.7064 49863.4143 36141.9169 52106.49235 0.952578953 0.966832752 0.787079896 1.083994711 0.859792233 1.072232421 1.113406483 0.956952043 0.693616386 1 15.66917552 -3.909274579 15.39630992 0.952782022 0.947721349 0 0.127671789 4084987.929 1909405.299 0.030785221 706562.244 0.000123233 3.909274579 -0.005060673 AT(ph)PPPS(ph)PLLSELLKK ddPTM_HeLa_A485_30min_R1 3 ATPPPSPLLSELLKK 15 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 2 0 AT(1)PPPS(1)PLLSELLKK;AT(1)PPPS(0.999)PLLS(0.001)ELLKK;AT(1)PPPS(0.999)PLLS(0.001)ELLKK ;; 77.39 0.0045951 444877000 527630 426920 259264 682280 625900 639120 987040 1020170 423950 936910 TRUE FALSE FALSE 644999.4732 476844.5803 355176.5425 719551.2288 563583.1983 672583.3349 776150.8406 769971.7079 509032.8763 703355.5796 0.917031857 0.677956633 0.504974373 1.023026261 0.801277781 0.956249377 1.103497098 1.094711879 0.723720535 1 19.4238947 -5.280385687 24.98783129 0.960966048 0.697784503 0.397382 0.145266831 789.7270276 1041550.291 0.041690263 0.061954282 5.24E-06 5.280385687 -0.263181545 AT(ph)PPPS(ph)PLLSELLKK ddPTM_HeLa_A486_30min_R1 3 ATPPPSPLLSELLKK 15 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 2 0 AT(1)PPPS(0.995)PLLS(0.005)ELLKK;AT(1)PPPS(1)PLLSELLKK;AT(1)PPPS(1)PLLSELLKK ;; 78.661 0.0040762 450016000 667800 588980 255886 402860 593340 738300 966320 933090 454390 1036670 TRUE FALSE FALSE 620990.6685 542307.0798 354971.9121 937878.4394 518917.7645 647216.0525 724536.5153 720645.7762 493776.8911 777081.0844 0.799132396 0.697877082 0.456801638 1.206924809 0.667778144 0.832880977 0.932382128 0.927375265 0.635425184 1 19.56770562 -5.236487138 24.99993075 0.873696576 0.655931098 0.279172585 0.172069553 1084.815711 1086887.604 0.04511645 0.078103436 5.80E-06 5.236487138 -0.217765478 AT(ph)PPPSPLLSELLK ddPTM_HeLa_A485_30min_R1 2 ATPPPSPLLSELLK 14 0 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 AT(1)PPPSPLLSELLK;AT(0.998)PPPS(0.002)PLLSELLK ; 123.29 0.00015783 310000000 178791 148099 124461 253079 229458 181182 282590 252650 182195 380310 TRUE FALSE FALSE 218562.4411 165417.8898 170504.3032 266904.0649 206612.3558 190668.4094 222212.338 190687.1914 218759.8653 285505.7161 0.765527374 0.579385562 0.597201014 0.934846659 0.723671521 0.667826942 0.778311345 0.667892727 0.766218864 1 18.1231601 -14 0.26951383 2.933304019 0.697156322 0.436338012 0.096316303 207.4415727 2.019533786 223.0637604 0.123870765 1.00E-14 14 -2.236147698 AT(ph)PPPSPLLSELLK ddPTM_HeLa_A486_30min_R1 2 ATPPPSPLLSELLK 14 0 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 AT(1)PPPSPLLSELLK;AT(1)PPPSPLLSELLK ; 162.41 3.65E-11 347750000 168936 204791 122897 83231 176496 220252 272813 247210 165796 245331 TRUE FALSE FALSE 157094.4588 188562.6153 170486.0097 193765.9743 154358.2259 193079.5476 204552.3019 190925.6796 180167.3308 183898.5208 0.854245364 1.025362328 0.927065694 1.053657057 0.839366327 1.049924419 1.112310752 1.038212155 0.979710604 1 17.48855035 AT(ph)PPPSPLLSELLKK ddPTM_HeLa_A485_30min_R1 2 ATPPPSPLLSELLKK 15 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 AT(1)PPPSPLLSELLKK;AT(1)PPPSPLLSELLKK ; 128.26 1.92E-05 675590000 715980 591800 390070 883710 826110 889230 1423880 1425250 601270 1179090 TRUE FALSE FALSE 875247.2809 661005.862 534373.1252 931984.8396 743859.5878 935788.7078 1119656.406 1075705.203 721939.3738 885164.5625 0.988796115 0.746760422 0.603699185 1.052894432 0.840363046 1.057191789 1.264913275 1.215260132 0.815599047 1 19.75558617 -5.964788002 1.492326544 1.094611108 0.801867354 0.306332136 0.163674756 0.444245866 2.033849403 0.066875847 0.076889898 1.08E-06 5.964788002 -0.292743754 AT(ph)PPPSPLLSELLKK ddPTM_HeLa_A486_30min_R1 2 ATPPPSPLLSELLKK 15 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 AT(1)PPPSPLLSELLKK;AT(0.996)PPPS(0.004)PLLSELLKK ; 98.165 0.00061314 635030000 1357230 1131110 545070 630610 1099810 1351850 1809540 1693800 867360 1802630 TRUE FALSE FALSE 1262095.186 1041476.724 756135.7015 1468091.949 961861.5745 1185072.492 1356773.953 1308158.715 942543.4632 1351239.715 0.934027598 0.770756449 0.559586647 1.086477797 0.711836371 0.877026096 1.004095674 0.968117427 0.697539787 1 20.36585221 -5.263906604 24.9998809 0.899848118 0.756386863 0.187684398 0.144111167 389.4007416 3945726.244 0.039721788 0.062189634 5.45E-06 5.263906604 -0.143461255 AT(ph)PSENLVPSSAR ddPTM_HeLa_A485_30min_R1 3 ATPSENLVPSSAR 13 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 AT(0.884)PS(0.116)ENLVPSSAR;AT(0.991)PS(0.009)ENLVPSSAR;AT(0.991)PS(0.009)ENLVPSSAR ;; 180.95 2.16E-16 1539730000 408662 380006 360512 428892 378647 302069 408442 303033 317969 530829 TRUE FALSE FALSE 499567.452 424444.3961 493880.391 452321.2839 340947.5752 317884.8658 321175.03 228713.6816 381782.4617 398503.0995 1.253609954 1.06509685 1.239338895 1.135050855 0.855570698 0.797697348 0.805953656 0.573932002 0.958041386 1 18.60423142 -5.77491245 3.523606136 0.80132228 1.177063964 0.66859254 0.117535319 0.127555348 3.346755481 0.035700451 0.043739865 1.68E-06 5.77491245 0.375741684 AT(ph)PSENLVPSSAR ddPTM_HeLa_A486_30min_R1 2 ATPSENLVPSSAR 13 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 AT(0.992)PS(0.008)ENLVPSSAR;AT(0.998)PS(0.002)ENLVPSSAR ; 186.62 1.39E-16 1583300000 350830 458600 295650 123526 306650 379290 350160 365030 354790 396990 TRUE FALSE FALSE 326238.6287 422258.8658 410133.5978 287574.7707 268187.0976 332497.0561 262546.2644 281920.6375 385543.4829 297581.12 1.096301501 1.418970618 1.378224525 0.966374381 0.901223497 1.117332498 0.882267882 0.947374072 1.295591208 1 18.18292347 -5.264575987 24.97354042 1.00744535 1.309946062 0.467104154 0.137694894 217.0848285 1728422.446 0.037939245 0.059046979 5.44E-06 5.264575987 0.302500712 AT(ph)SFSSAGEVPKPRPPSTR ddPTM_HeLa_A485_30min_R1 1 ATSFSSAGEVPKPRPPSTR 19 2 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-3 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 AT(0.498)S(0.498)FS(0.003)SAGEVPKPRPPSTR 121.21 1.28E-05 338660000 45053 51879 46229 49059 73709 52543 89615 78415 63005 84383 TRUE FALSE FALSE 55074.88442 57945.79776 63331.03085 51738.96895 66370.27315 55294.07023 70468.02316 59183.5983 75649.52558 63347.87105 0.869403873 0.914723681 0.999734163 0.816743611 1.047711187 0.872863907 1.112397654 0.934263414 1.194192075 1 15.95100851 -6.712979768 1.122047472 1.064988722 0.916130568 0.306599047 0.093230691 0.612848512 1.548432612 0.058089064 0.034483607 1.94E-07 6.712979768 -0.148858154 AT(ph)SNVFAMFDQSQIQEFK ddPTM_HeLa_A485_30min_R1 14 ATSNVFAMFDQSQIQEFK 18 0 J3QRS3;P19105;O14950;J3KTJ1;P24844;P24844-2 J3QRS3 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 1 0 AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.581)S(0.419)NVFAMFDQSQIQEFK;AT(0.594)S(0.406)NVFAMFDQSQIQEFK;AT(0.574)S(0.426)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.584)S(0.416)NVFAMFDQSQIQEFK;AT(0.593)S(0.407)NVFAMFDQSQIQEFK;AT(0.6)S(0.4)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.59)S(0.41)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK ;;;;;;;;;;;;; 271.21 7.59E-69 10155720000 5867036 4130598 3879319 6576053 6887665 5655045 8945350 8219301 5187644 9658321 TRUE FALSE FALSE 7172137.917 4613635.505 5314440.53 6935286.124 6201904.889 5951134.412 7034102.896 6203504.542 6228756.567 7250679.323 0.989167718 0.636303896 0.732957602 0.956501566 0.855355011 0.82076922 0.970130188 0.855575632 0.859058343 1 22.78968474 -5.25444197 24.98808194 0.893916664 0.771159151 0.218047975 0.098830548 783.1806874 2796769.511 0.026024163 0.04383857 5.57E-06 5.25444197 -0.122757513 AT(ph)SNVFAMFDQSQIQEFK ddPTM_HeLa_A486_30min_R1 14 ATSNVFAMFDQSQIQEFK 18 0 J3QRS3;P19105;O14950;J3KTJ1;P24844;P24844-2 J3QRS3 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 1 0 AT(0.58)S(0.42)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.589)S(0.411)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.611)S(0.389)NVFAMFDQSQIQEFK;AT(0.596)S(0.404)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.5)S(0.5)NVFAMFDQSQIQEFK;AT(0.544)S(0.456)NVFAMFDQSQIQEFK;AT(0.593)S(0.407)NVFAMFDQSQIQEFK ;;;;;;;;;;;;; 315.16 3.68E-89 8600433000 5302922 8192480 6019832 4650607 9071565 10126250 12580273 12690547 7392512 9020934 TRUE FALSE FALSE 4931214.552 7543278.048 8350872.167 10826848.12 7933724.729 8876976.231 9432555.635 9801186.481 8033300.892 6762033.41 0.72925025 1.115533981 1.234964642 1.601123134 1.173274997 1.312767284 1.394928872 1.449443664 1.188000769 1 22.68902571 -4.327560022 1.877567251 1.323013412 0.594757382 0.540450504 0.157629743 0.488896348 2.007585449 0.040984983 0.595590113 4.70E-05 4.327560022 -0.72825603 AT(ph)SPEAGGGGGALK ddPTM_HeLa_A485_30min_R1 1 ATSPEAGGGGGALK 14 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 AT(0.5)S(0.5)PEAGGGGGALK 139.86 5.14E-05 0 412790 461040 377910 490210 582010 502730 656260 698590 442670 704870 TRUE FALSE FALSE 504613.7114 514954.6175 517714.6351 516988.931 524063.0408 529052.1654 516044.6898 527259.7072 531509.8086 529158.8812 0.953614745 0.973156902 0.97837276 0.977001331 0.990369924 0.999798329 0.975216912 0.996410957 1.004442763 1 19.01334143 -1 0.283891938 0.999689882 0.65698564 0.759566448 0.007452038 26.51317316 0.374909893 0.008376902 4.528820642 0.1 1 -0.342704242 AT(ph)SPSSSVSGDFDDGHHSVSTPGPSR ddPTM_HeLa_A485_30min_R1 2 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AT(0.467)S(0.467)PS(0.066)SSVSGDFDDGHHSVSTPGPSR;AT(0.421)S(0.421)PS(0.15)S(0.005)S(0.002)VSGDFDDGHHSVSTPGPSR ; 116.94 0.00038714 1193460000 126065 162461 174816 160819 228974 174036 237051 239814 172384 233916 TRUE FALSE FALSE 154107.7243 181459.4007 239487.7131 169604.1348 206176.5446 183148.2558 186403.1173 180999.2405 206979.8876 175605.0461 0.877581412 1.033338191 1.363786055 0.965827227 1.174092369 1.042955541 1.061490666 1.030717764 1.178667084 1 17.42197478 -4.350206304 4.30615405 1.102573717 0.876635766 0.273087514 0.109630454 0.252740048 7.607519504 0.026347074 0.131978101 4.46E-05 4.350206304 -0.225937951 AT(ph)SPSSSVSGDFDDGHHSVSTPGPSR ddPTM_HeLa_A486_30min_R1 1 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AT(0.431)S(0.431)PS(0.105)S(0.026)S(0.006)VSGDFDDGHHSVSTPGPSR 89.829 0.007681 707490000 102580 143130 68676 27861 98954 111130 156910 123300 71999 151430 TRUE FALSE FALSE 95389.67172 131787.8575 95269.18641 64861.81602 86542.26661 97419.91049 117649.4584 95227.28162 78239.93129 113510.9424 0.840356619 1.161014566 0.839295177 0.571414655 0.762413427 0.858242461 1.036459181 0.838926007 0.68927215 1 16.79247185 -4.961351915 21.03780287 0.814497528 1.00055581 0.187021245 0.146656994 47.49167795 25848.88996 0.039513721 0.082253102 1.09E-05 4.961351915 0.186058282 AT(ph)TPLYHGFK ddPTM_HeLa_A485_30min_R1 1 ATTPLYHGFK 10 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AT(0.5)T(0.5)PLYHGFK 72.289 0.0042443 0 995690 989500 732510 667030 1335800 651350 621990 580010 539870 647090 TRUE FALSE FALSE 1217177.805 1105213.417 1003495.931 703468.1599 1202803.062 685453.6788 489096.7553 437761.6381 648216.957 485782.3718 2.505603077 2.275120469 2.065731466 1.448113807 2.476012164 1.411030368 1.006822774 0.90114764 1.334377274 1 18.88995061 -6.4579204 4.267680121 1.064472293 2.113903227 0.755764539 0.295358348 0.117861214 4.220072763 0.113246933 0.096297305 3.48E-07 6.4579204 1.049430934 AT(ph)TPLYHGFK ddPTM_HeLa_A486_30min_R1 1 ATTPLYHGFK 10 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AT(0.5)T(0.5)PLYHGFK 113.22 0.00075382 273300000 866920 688060 436880 110550 759530 499420 543010 461730 351220 374440 TRUE FALSE FALSE 806153.3848 633535.6197 606051.6361 257365.9869 664262.6651 437806.6381 407143.1546 356604.1585 381664.0324 280677.7868 2.872166672 2.257163372 2.159243319 0.916944621 2.366637818 1.559819333 1.450571345 1.270510797 1.359794221 1 18.09855537 -1 0.31350325 1.219014215 16.36225582 0.633746388 0.374064884 36.85981583 0.526721794 0.360114794 317.792864 0.1 1 15.14324161 AT(ph)TPPNQGRPDS(ph)PVYANLQELK ddPTM_HeLa_A486_30min_R1 1 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 0 AT(0.5)T(0.5)PPNQGRPDS(0.995)PVY(0.005)ANLQELK 92.121 0.0012282 586550000 106670 114010 68552 44884 113740 115310 131000 126280 90073 138260 TRUE FALSE FALSE 99192.98384 104975.4324 95097.17029 104492.2203 99473.66862 101084.2246 98222.41442 97528.80067 97880.60016 103638.7961 0.957102819 1.012897065 0.917582738 1.008234602 0.959811117 0.975351204 0.947737895 0.941045288 0.944439765 1 16.66120464 -6.756552783 24.95730844 0.953392843 0.972339282 0.037426692 0.029608595 306.0693105 1563191.524 0.010833786 0.008115359 1.75E-07 6.756552783 0.018946438 ATAGDTHLGGEDFDNR ddPTM_HeLa_A485_30min_R1 5 ATAGDTHLGGEDFDNR 16 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741;Q53FA3;P34931 A0A0G2JIW1;P17066;Q53FA3 HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like 0 0 ;;;; ;;;; 134.97 3.21E-05 3726624000 2527376 2963454 3362118 2674042 3926194 2988347 3601587 3307627 2923723 3547013 FALSE FALSE TRUE 3089582.072 3310004.167 4605905.358 2820118.143 3535288.34 3144812.228 2832078.515 2496426.292 3510487.388 2662807.937 1.160272218 1.243050286 1.729717451 1.059076813 1.327654274 1.18101354 1.063568452 0.937516468 1.31834044 1 21.34451694 -6.320045487 1.430079378 1.073287793 1.328332024 0.235574704 0.187931273 0.60053462 2.467416764 0.088620776 0.076424601 4.79E-07 6.320045487 0.255044232 ATAGDTHLGGEDFDNR ddPTM_HeLa_A486_30min_R1 4 ATAGDTHLGGEDFDNR 16 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741;Q53FA3;P34931 A0A0G2JIW1;P17066;Q53FA3 HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like 0 0 ;;; ;;; 179.25 4.70E-17 3657320000 2621290 3456990 3538950 896960 4540500 3215170 3429700 3584100 3099360 3279040 FALSE FALSE TRUE 2437551.107 3183045.522 4909326.216 2088168.21 3970988.152 2818515.015 2571552.784 2768078.67 3368015.02 2457947.041 0.991702045 1.29500167 1.997327906 0.849557853 1.615571078 1.146694769 1.046219769 1.126175066 1.370255324 1 21.2290224 -6.46497669 24.89742244 1.139073445 1.357581889 0.105196614 0.308752459 615.8777743 264822.1253 0.106880871 0.094259823 3.43E-07 6.46497669 0.218508444 ATAPQT(ph)QHVSPMR ddPTM_HeLa_A486_30min_R1 3 ATAPQTQHVSPMR 13 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PK06 P29692-2 EEF1D Elongation factor 1-delta 1 0 ATAPQT(0.5)QHVS(0.5)PMR;ATAPQT(0.688)QHVS(0.312)PMR;ATAPQT(0.5)QHVS(0.5)PMR ;; 97.716 0.0026288 1157683000 731255 833307 755714 231463 994695 764912 801637 801849 647404 684917 TRUE FALSE FALSE 679997.8007 767272.7185 1048346.7 538857.5615 869931.0779 670544.9345 601058.9437 619285.4869 703521.5 513409.3251 1.32447497 1.494465879 2.041931551 1.049567149 1.694420096 1.306063022 1.170720737 1.206221735 1.370293576 1 18.96974997 -6.467669469 5.926239912 1.207805301 1.521845893 0.282857986 0.251831389 0.301871247 23.44838996 0.088793145 0.07682072 3.41E-07 6.467669469 0.314040592 ATAPQTQHVS(ph)PMR ddPTM_HeLa_A485_30min_R1 36 ATAPQTQHVSPMR 13 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PK06 P29692-2 EEF1D Elongation factor 1-delta 1 0 ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.041)QHVS(0.959)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.008)QHVS(0.992)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.005)QHVS(0.995)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.001)QHVS(0.999)PMR;AT(0.001)APQT(0.01)QHVS(0.989)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.021)QHVS(0.979)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.002)QHVS(0.998)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.001)QHVS(0.999)PMR;ATAPQT(0.149)QHVS(0.851)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.004)QHVS(0.996)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 254.63 3.55E-41 4.60E+11 31350084 46027305 46115628 32122658 53512719 42091569 46850801 54170112 42042430 40758497 TRUE FALSE FALSE 38323802.03 51409797.94 63175717.83 33877437.47 48184804.8 44295418.47 36840744.63 40884807.1 50479960.06 30598153.8 1.252487398 1.680160126 2.064690512 1.107172599 1.574761834 1.447650036 1.204018545 1.336185423 1.649771434 1 24.86694127 -5.279624186 24.9306728 1.355053996 1.667217511 0.252241533 0.261635951 1130.414475 1549752.2 0.072871098 0.108324968 5.25E-06 5.279624186 0.312163515 ATAPQTQHVS(ph)PMR ddPTM_HeLa_A486_30min_R1 35 ATAPQTQHVSPMR 13 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PK06 P29692-2 EEF1D Elongation factor 1-delta 1 0 ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.032)QHVS(0.967)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.004)QHVS(0.996)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.043)QHVS(0.957)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.003)QHVS(0.997)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.005)QHVS(0.995)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.012)QHVS(0.988)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 207.41 1.02E-21 6.14E+11 30513669 35916095 33592161 10383950.2 41357514 31113336 35366012 37436798 28744260 31059125 TRUE FALSE FALSE 28374818.38 33069972.83 46599945.37 24174360.84 36170068.95 27274888.94 26517061.73 28913256.33 31235835.6 23281717.94 1.218759649 1.420426659 2.001568161 1.038340938 1.553582474 1.171515307 1.138964994 1.24188672 1.341646509 1 24.47269418 -6.02314685 1.337446259 1.190825059 1.487785947 0.200844755 0.249990613 0.71696651 2.647320697 0.107214015 0.118619862 9.48E-07 6.02314685 0.296960887 ATAPQTQHVS(ph)PMRQVEPPAK ddPTM_HeLa_A485_30min_R1 8 ATAPQTQHVSPMRQVEPPAK 20 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PK06 P29692-2 EEF1D Elongation factor 1-delta 1 0 ATAPQTQHVS(1)PMRQVEPPAK;ATAPQTQHVS(1)PMRQVEPPAK;AT(0.048)APQT(0.208)QHVS(0.744)PMRQVEPPAK;AT(0.008)APQT(0.05)QHVS(0.943)PMRQVEPPAK;ATAPQTQHVS(1)PMRQVEPPAK;ATAPQTQHVS(1)PMRQVEPPAK;ATAPQTQHVS(1)PMRQVEPPAK;ATAPQTQHVS(1)PMRQVEPPAK ;;;;;;; 198.67 1.65E-26 4714316000 323608 1090031 598748 244522 1405250 1638038 2095612 5079520 657673 464601 TRUE FALSE FALSE 395593.4832 1217500.643 820249.8012 257879.6177 1265338.376 1723803.137 1647867.377 3833759.756 789661.9386 348784.521 1.134205962 3.490695745 2.351737969 0.739366578 3.627851294 4.942315478 4.724600082 10.99177149 2.264039517 1 18.41197649 -2.409229274 18.66669759 3.768561828 2.539443285 0 2.874286697 0 0 0.687787482 0 0.003897362 2.409229274 -1.229118543 ATAPQTQHVS(ph)PMRQVEPPAK ddPTM_HeLa_A486_30min_R1 2 ATAPQTQHVSPMRQVEPPAK 20 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PK06 P29692-2 EEF1D Elongation factor 1-delta 1 0 ATAPQTQHVS(1)PMRQVEPPAK;ATAPQT(0.002)QHVS(0.998)PMRQVEPPAK ; 158.83 9.40E-11 1053920000 333400 205093 272352 203263 896160 220829 567800 708480 154073 427120 TRUE FALSE FALSE 310030.3817 188840.6837 377813.9882 473206.5363 783755.2564 193585.3632 425730.4344 547174.57 167428.1717 320166.3719 0.96834149 0.589820482 1.180055188 1.478001995 2.447962451 0.6046399 1.329716272 1.709031985 0.522941153 1 18.28846226 -2.926271136 9.056745612 1.217521139 0.725989806 0 0.565587242 0 347783985.5 0.134871832 0 0.001185029 2.926271136 -0.491531333 ATASS(ph)PTQQDGR ddPTM_HeLa_A485_30min_R1 2 ATASSPTQQDGR 12 0 Q9BV73;Q9BV73-2 Q9BV73 CEP250 Centrosome-associated protein CEP250 1 0 ATAS(0.006)S(0.92)PT(0.073)QQDGR;ATASS(1)PTQQDGR ; 293.8 1.02E-49 497260000 420380 616700 633790 462890 702410 568610 688220 777290 569070 625260 TRUE FALSE FALSE 513892.0807 688817.7004 868255.2952 488176.5086 632475.5941 598381.5404 541176.1748 586658.4088 683277.1292 469394.1891 1.094798557 1.467461073 1.849735927 1.040013958 1.347429535 1.274795373 1.152924743 1.249820348 1.455657409 1 18.84044046 -5.298255543 24.99943531 1.23278729 1.470345537 0.229324676 0.211560723 872.6609359 592564.8313 0.059336514 0.088013224 5.03E-06 5.298255543 0.237558248 ATASS(ph)PTQQDGR ddPTM_HeLa_A486_30min_R1 2 ATASSPTQQDGR 12 0 Q9BV73;Q9BV73-2 Q9BV73 CEP250 Centrosome-associated protein CEP250 1 0 ATAS(0.008)S(0.984)PT(0.007)QQDGR;ATAS(0.001)S(0.999)PTQQDGR ; 285.99 2.76E-41 476450000 646560 788580 730060 216468 866000 631490 714110 737340 626460 672380 TRUE FALSE FALSE 601239.4828 726090.0488 1012758.784 503948.4437 757378.2049 553583.1843 535432.1249 569463.778 680762.0572 504011.6715 1.192907857 1.440621497 2.009395498 0.999874551 1.502699734 1.098353898 1.062340726 1.129862283 1.350687088 1 18.94309762 -5.762257446 1.514670809 1.146917491 1.500989242 0.234506734 0.259509048 0.568308676 2.712006586 0.096262057 0.131644423 1.73E-06 5.762257446 0.35407175 ATAVMPDGQFK ddPTM_HeLa_A485_30min_R1 3 ATAVMPDGQFK 11 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;; ;; 296.35 3.93E-58 268032000 496610 494610 455780 580030 637610 611230 804710 790580 488060 779660 FALSE FALSE TRUE 607079.1812 552450.337 624391.9886 611715.5702 574127.3096 643233.0577 632777.1346 596689.0154 586009.1652 585305.1106 1.037201231 0.94386727 1.066780346 1.045122551 0.980902608 1.098970513 1.081106457 1.019449522 1.001202885 1 19.15882935 -4.77599351 24.99825766 1.039505579 0.990534221 0.162342508 0.04154773 346.4513807 595068.8733 0.010923814 0.022897176 1.67E-05 4.77599351 -0.048971358 ATAVVDGAFK ddPTM_HeLa_A485_30min_R1 1 ATAVVDGAFK 10 0 P32119;A6NIW5;P32119-2 P32119 PRDX2 Peroxiredoxin-2 0 0 162.88 1.77E-05 27754000 65934 66634 65045 81193 98326 87619 107170 106870 72581 112830 FALSE FALSE TRUE 80600.79083 74426.26666 89107.85225 85628.368 88536.3182 92206.59536 84272.254 80659.96493 87147.34095 84703.55748 0.951563231 0.878667542 1.051996574 1.010918202 1.045249111 1.088579962 0.994908083 0.952261833 1.028851013 1 16.37013494 -4.763475456 24.99999524 1.021793273 0.915115375 0.551035931 0.038445083 37.65425871 462365.4207 0.010532045 0.023834015 1.72E-05 4.763475456 -0.106677898 ATCAPQHGAPGPGPADASK ddPTM_HeLa_A485_30min_R1 3 ATCAPQHGAPGPGPADASK 19 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;; ;; 163.85 1.09E-14 254182000 210782 218073 202469 245871 274296 244445 340953 343876 219629 357418 FALSE FALSE TRUE 257669.7287 243574.7404 277370.7085 259302.3102 246986.1271 257243.7622 268105.6062 259539.8718 263706.5257 268320.2704 0.960306608 0.907776144 1.033729983 0.966391059 0.920490005 0.958719078 0.99919997 0.967276425 0.982805083 1 18.03359652 -7.567405623 0.633661676 0.998621858 0.958395258 0.130965397 0.033013942 1.642452717 1.463962569 0.033527575 0.016080792 2.71E-08 7.567405623 -0.0402266 ATCAPQHGAPGPGPADASK ddPTM_HeLa_A486_30min_R1 4 ATCAPQHGAPGPGPADASK 19 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 145.88 3.64E-09 132523400 260552.9 267578.6 188042.5 118155.1 533284.2 275007.5 329200.5 330840.3 215201.2 309293.8 FALSE FALSE TRUE 242289.4872 246374.6972 260857.592 275071.044 466394.723 241079.8707 246831.053 255515.1859 233855.0133 231844.6193 1.045051155 1.06267162 1.125139728 1.186445667 2.011669386 1.039833797 1.064639989 1.102096683 1.008671299 1 17.82279872 ATCGTVGDDNEEAKRKS(ph)PK ddPTM_HeLa_A485_30min_R1 1 ATCGTVGDDNEEAKRKSPK 19 3 P38432 P38432 COIL Coilin 1 0 ATCGTVGDDNEEAKRKS(1)PK 172.42 8.93E-13 216190000 93723 101890 39944 232570 289280 289850 671330 942320 122640 356010 TRUE FALSE FALSE 114571.358 113805.1492 54720.94781 245274.7102 260478.2675 305026.0978 527894.8612 711214.5425 147252.7231 267263.2589 0.428683533 0.425816664 0.204745493 0.917727005 0.974613078 1.141294539 1.975186801 2.661101064 0.550965081 1 18.027902 -5.961557823 1.268878391 1.642518523 0.378379052 0.417608611 0.551365634 0.390668414 1.314282778 0.237766387 0.280214508 1.09E-06 5.961557823 -1.264139471 ATDDDMQSLASLMSVKPSDVGNLDDFAES(ph)DEDEAHGPGAPEAR ddPTM_HeLa_A485_30min_R1 3 ATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEAHGPGAPEAR 43 1 Q8N3D4;E9PIH6;A0A0U1RQH4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ATDDDMQSLASLMSVKPSDVGNLDDFAES(1)DEDEAHGPGAPEAR;ATDDDMQSLASLMS(0.001)VKPS(0.012)DVGNLDDFAES(0.986)DEDEAHGPGAPEAR;ATDDDMQSLASLMSVKPS(0.001)DVGNLDDFAES(0.999)DEDEAHGPGAPEAR ;; 204.4 2.74E-30 304063000 47683.3 47326.7 40048.5 60059.1 62835.3 57099.8 69484.2 67665.3 48655.6 95828 TRUE FALSE FALSE 58290.28558 52861.14588 54864.10671 63339.97656 56579.1969 60089.45723 54638.33304 51070.27908 58420.33262 71939.84318 0.810264285 0.734796512 0.762638675 0.880457529 0.786479292 0.835273676 0.759500308 0.709902563 0.812072004 1 16.13450339 -8.035405164 23.75312886 1.000000001 0.784970596 0.655775481 0.046465363 1953.037572 1310280.271 0.046810227 0.012086349 9.22E-09 8.035405164 -0.215029405 ATDDDMQSLASLMSVKPSDVGNLDDFAES(ph)DEDEAHGPGAPEAR ddPTM_HeLa_A486_30min_R1 2 ATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEAHGPGAPEAR 43 1 Q8N3D4;E9PIH6;A0A0U1RQH4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ATDDDMQSLASLMSVKPSDVGNLDDFAES(1)DEDEAHGPGAPEAR;ATDDDMQSLASLMSVKPS(0.008)DVGNLDDFAES(0.992)DEDEAHGPGAPEAR ; 102.08 1.86E-05 126359000 65471 65742 49090 24269 76044 67519 78213 83500 65038 92007 TRUE FALSE FALSE 60881.82099 60532.36449 68098.96268 56499.45849 66505.85244 59189.19226 58643.28015 64488.87279 70675.54621 68967.84833 0.882756566 0.877689618 0.987401584 0.819214458 0.964302266 0.858214279 0.850298821 0.93505705 1.024760782 1 16.07363634 -7.609092065 4.108615042 1.010904464 0.893169274 0.495206024 0.048249386 0.180733048 5.616942451 0.035163766 0.012009174 2.46E-08 7.609092065 -0.117735189 ATDIPASAS(ph)PPPVAGVPFFK ddPTM_HeLa_A485_30min_R1 2 ATDIPASASPPPVAGVPFFK 20 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 ATDIPASAS(1)PPPVAGVPFFK;ATDIPAS(0.012)AS(0.988)PPPVAGVPFFK ; 286.85 4.14E-73 298663000 428219 465705 443354 463228 534656 452679 547872 479805 478638 641426 TRUE FALSE FALSE 523474.8392 520165.1487 607369.0941 488532.9727 481423.7713 476380.5725 430814.6715 362132.0714 574696.2563 481530.3028 1.087106743 1.080233467 1.261330991 1.014542532 0.999778765 0.989305491 0.894678214 0.7520442 1.1934789 1 18.87726706 -5.475429451 5.877737606 0.960051095 1.138090565 0.312737976 0.11282739 0.241098204 20.28858674 0.032136725 0.047035105 3.35E-06 5.475429451 0.17803947 ATDIPASAS(ph)PPPVAGVPFFK ddPTM_HeLa_A486_30min_R1 4 ATDIPASASPPPVAGVPFFK 20 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 ATDIPASAS(1)PPPVAGVPFFK;ATDIPAS(0.041)AS(0.959)PPPVAGVPFFK;ATDIPASAS(1)PPPVAGVPFFK;ATDIPAS(0.002)AS(0.998)PPPVAGVPFFK ;;; 237.3 4.54E-46 577240000 782168 876424 629235 280334 827952 811947 868304 850462 728521 854308 TRUE FALSE FALSE 727342.0623 806972.9704 872891.6435 652631.7193 724102.5398 711777.2344 651045.1552 656830.3681 791669.7869 640383.7162 1.135791001 1.260139741 1.363075952 1.019126038 1.130732281 1.11148553 1.016648517 1.025682495 1.236242844 1 19.2885771 -5.271505277 24.99402023 1.079345913 1.253715986 0.477873232 0.084220116 571.8092984 1419824.068 0.023476713 0.03527663 5.35E-06 5.271505277 0.174370073 ATDS(ph)FSGR ddPTM_HeLa_A486_30min_R1 1 ATDSFSGR 8 0 Q9HBH9;K7EK27;Q9HBH9-2 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 0 AT(0.001)DS(0.995)FS(0.004)GR 93.325 0.003388 469640000 345030 427270 390210 117370 461290 352750 378360 412000 346530 405970 TRUE FALSE FALSE 320845.1787 393411.5691 541309.7622 273243.2916 403430.7068 309231.2915 283690.3261 318196.5939 376567.4994 304312.4696 1.05432807 1.292788198 1.778795864 0.897903697 1.325712047 1.016163721 0.932233656 1.045624566 1.237436967 1 18.21519393 -5.300273329 24.98694859 1.070206597 1.367053321 0.322841192 0.205735833 640.1743949 411906.4273 0.0582186 0.086353867 5.01E-06 5.300273329 0.296846724 ATDSDLSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ATDSDLSSPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 0 ATDSDLS(0.022)S(0.978)PR;ATDSDLS(0.001)S(0.999)PR ; 160.88 9.27E-07 1308200000 3108400 4249000 4177700 3312600 4905700 4028200 4581600 5171100 3820600 4535700 TRUE FALSE FALSE 3799852.856 4745883.589 5723205.079 3493558.95 4417271.283 4239110.323 3602703.732 3902879.617 4587359.375 3405033.463 1.115951692 1.393784713 1.680807293 1.025998419 1.297276908 1.244954086 1.058052372 1.146208887 1.347228867 1 21.69923755 -5.286487275 24.99155835 1.171068796 1.396541712 0.29792599 0.166031906 967.3150651 965137.1098 0.04673923 0.069360115 5.17E-06 5.286487275 0.225472916 ATDSDLSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ATDSDLSSPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 0 ATDSDLS(0.012)S(0.988)PR 127.78 9.76E-05 1046700000 1219000 1451600 1244000 446070 1716400 1287900 1485000 1549600 1223200 1440400 TRUE FALSE FALSE 1133554.395 1336569.929 1725710.115 1038473.503 1501113.107 1129011.992 1113437.293 1196789.908 1329227.961 1079714.465 1.049864971 1.237892029 1.598302303 0.961803826 1.390287114 1.04565793 1.031233099 1.108431856 1.231092112 1 20.0422184 -6.28569882 24.85598502 1.086806861 1.250691624 0.184554315 0.172590389 1317.55932 1349953.577 0.060024146 0.052961314 5.18E-07 6.28569882 0.163884763 ATEDGEEDEEMIES(ph)IENLEDLKGHSVR ddPTM_HeLa_A485_30min_R1 2 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 1 0 ATEDGEEDEEMIES(1)IENLEDLKGHSVR;ATEDGEEDEEMIES(1)IENLEDLKGHSVR ; 232.38 2.42E-39 272330000 439490 432200 371880 502360 547870 548330 695910 770650 417140 777730 TRUE FALSE FALSE 537253.0343 482742.0304 509453.8872 529802.6548 493322.1391 577039.7109 547223.1434 581646.8792 500856.1718 583856.2241 0.920180367 0.826816621 0.872567365 0.907419726 0.844937707 0.988325014 0.937256675 0.996215944 0.857841625 1 19.15525362 -6.259179704 24.992324 0.9545244 0.873476059 0.442566906 0.045738675 187.9790857 2079081.44 0.014626812 0.013947929 5.51E-07 6.259179704 -0.081048341 ATEDGEEDEEMIES(ph)IENLEDLKGHSVR ddPTM_HeLa_A486_30min_R1 3 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 1 0 ATEDGEEDEEMIES(1)IENLEDLKGHSVR;ATEDGEEDEEMIES(1)IENLEDLKGHSVR;ATEDGEEDEEMIES(1)IENLEDLKGHSVR ;; 286.93 6.75E-78 252302000 210008 200807 125902 90786 207971 200449 243730 256086 160631 246497 TRUE FALSE FALSE 195287.5237 184894.322 174654.6262 211354.3961 181885.3379 175719.6404 182746.1761 197780.8081 174554.6244 184772.5468 1.05690768 1.000659055 0.945241213 1.143862548 0.984374254 0.951005133 0.989033161 1.070401483 0.944699997 1 17.49539089 ATENDIANFFS(ph)PLNPIR ddPTM_HeLa_A485_30min_R1 3 ATENDIANFFSPLNPIR 17 0 P31942-2;P31942;P31942-6;P31942-5;P31942-4;P31942-3 P31942-2 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 0 ATENDIANFFS(1)PLNPIR;ATENDIANFFS(1)PLNPIR;ATENDIANFFS(1)PLNPIR ;; 326.94 2.14E-91 510530000 338384 426670 461680 354600 508070 417300 476270 565510 401960 448820 TRUE FALSE FALSE 413656.3534 476565.345 632474.6441 373970.9001 457484.7669 439149.1827 374511.0237 426817.7858 482629.685 336937.4339 1.227694853 1.414403082 1.877127859 1.109911997 1.357773642 1.303355278 1.111515035 1.266756801 1.432401498 1 18.3621212 -5.333937894 24.99999772 1.241022659 1.497240203 0.305845673 0.192533372 185.7773788 64061.68263 0.053903971 0.079952523 4.64E-06 5.333937894 0.256217544 ATENDIANFFS(ph)PLNPIR ddPTM_HeLa_A486_30min_R1 4 ATENDIANFFSPLNPIR 17 0 P31942-2;P31942;P31942-6;P31942-5;P31942-4;P31942-3 P31942-2 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 0 ATENDIANFFS(1)PLNPIR;ATENDIANFFS(1)PLNPIR;ATENDIANFFS(1)PLNPIR;ATENDIANFFS(1)PLNPIR ;;; 297.29 1.79E-68 680320000 547443 660110 601760 211936 794900 595470 658709 686310 565897 660040 TRUE FALSE FALSE 509070.0727 607800.4795 834777.5877 493397.7187 695196.2299 522006.9657 493893.0411 530052.195 614949.4076 494761.6879 1.028919751 1.22847119 1.687231668 0.997243179 1.405113304 1.055067477 0.998244313 1.071328294 1.242920426 1 18.91637426 -6.283942785 24.04000168 1.073265847 1.275215744 0.206988868 0.191535835 806.8316365 861920.7615 0.067154769 0.059276631 5.20E-07 6.283942785 0.201949897 ATENDIYNFFS(ph)PLNPMR ddPTM_HeLa_A485_30min_R1 3 ATENDIYNFFSPLNPMR 17 0 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 1 0 ATENDIYNFFS(1)PLNPMR;ATENDIYNFFS(1)PLNPMR;ATENDIYNFFS(1)PLNPMR ;; 199.41 5.33E-25 268693000 238359 325674 337405 208958 416784 310256 326826 387217 313192 294997 TRUE FALSE FALSE 291381.1372 363758.7413 462225.1501 220372.8464 375287.5215 326500.5244 256996.9552 292251.4236 376046.7616 221459.6769 1.315729984 1.642550673 2.087175221 0.995092423 1.694608819 1.474311391 1.160468392 1.319659758 1.698037164 1 17.75668451 -5.978126004 0.901620881 1.327120303 1.611487571 0.109367535 0.311866195 1.4048916 2.500270342 0.170146509 0.213403068 1.05E-06 5.978126004 0.284367268 ATENDIYNFFS(ph)PLNPMR ddPTM_HeLa_A486_30min_R1 2 ATENDIYNFFSPLNPMR 17 0 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 1 0 ATENDIYNFFS(1)PLNPMR;ATENDIYNFFS(1)PLNPMR ; 191.83 4.66E-18 252570000 236680 282950 249900 82552 315710 250370 267390 291160 257480 238370 TRUE FALSE FALSE 220089.9542 260528.0115 346667.9726 192185.2279 276110.7079 219481.895 200486.1938 224869.224 279798.5737 178680.6005 1.231750697 1.458065458 1.940154508 1.075579707 1.545275241 1.228347646 1.122036714 1.258498255 1.565914671 1 17.44702348 -5.29909264 24.9992481 1.272546473 1.5347986 0.233515512 0.236720749 858.8613491 570224.7126 0.066139346 0.098102909 5.02E-06 5.29909264 0.262252127 ATENDIYNFFS(ph)PLNPVR ddPTM_HeLa_A485_30min_R1 3 ATENDIYNFFSPLNPVR 17 0 G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;P52597 G8JLB6;P52597 HNRNPH1;HNRNPF "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 1 0 ATENDIY(0.001)NFFS(0.999)PLNPVR;ATENDIYNFFS(1)PLNPVR;ATENDIY(0.002)NFFS(0.997)PLNPVR ;; 247.61 9.46E-43 869670000 258419 284360 309620 334348 379231 285676 375118 363827 278235 452102 TRUE FALSE FALSE 315903.415 317613.4284 424161.3224 352612.5846 341473.4301 300633.5536 294970.9749 274597.8578 334074.2124 339401.2917 0.930766685 0.935805008 1.249733966 1.038925288 1.006105275 0.885776103 0.869092081 0.809065447 0.984304481 1 18.37263253 -6.141539198 3.394079006 0.894897932 1.044738535 0.282010356 0.097088385 0.310437989 6.641399429 0.035027677 0.035113913 7.22E-07 6.141539198 0.149840603 ATENDIYNFFS(ph)PLNPVR ddPTM_HeLa_A486_30min_R1 1 ATENDIYNFFSPLNPVR 17 0 G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;P52597 G8JLB6;P52597 HNRNPH1;HNRNPF "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 1 0 ATENDIYNFFS(1)PLNPVR 173.87 2.21E-12 131140000 78176 90168 84640 30724 101780 77168 92823 97932 71506 88924 TRUE FALSE FALSE 72696.2661 83022.75929 117414.8747 71527.0247 89013.80334 67647.79675 69597.70362 75635.02144 77704.19765 66656.8516 1.090604557 1.245524763 1.761482457 1.073063353 1.335403656 1.014866366 1.044119276 1.134692378 1.165734591 1 16.02446556 -6.018093501 1.861551646 1.081063173 1.332349156 0.25140107 0.186765009 0.496737676 3.465013906 0.07153335 0.077718021 9.59E-07 6.018093501 0.251285983 ATENDIYNFFSPLNPVR ddPTM_HeLa_A485_30min_R1 1 ATENDIYNFFSPLNPVR 17 0 G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;P52597 G8JLB6;P52597 HNRNPH1;HNRNPF "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 0 148.57 3.60E-08 0 5890.5 7411.5 6856.3 7403.3 8390 8092.9 11156 10624 7662.3 12382 FALSE FALSE TRUE 7200.821403 8278.210454 9392.730684 7807.723533 7554.662141 8516.63173 8772.429464 8018.447342 9200.053327 9295.395274 0.774665433 0.890571106 1.010471358 0.839956054 0.812731672 0.916220503 0.943739261 0.862625752 0.989743099 1 13.1823005 -7.820292547 0.848661068 1.004292838 0.87793397 0.299975337 0.065176725 0.829340281 1.325134215 0.064392125 0.023906881 1.51E-08 7.820292547 -0.126358869 ATEPPS(ph)PDAGELSLASR ddPTM_HeLa_A485_30min_R1 2 ATEPPSPDAGELSLASR 17 0 Q8IYB8 Q8IYB8 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" 1 0 ATEPPS(1)PDAGELSLASR;ATEPPS(1)PDAGELSLASR ; 197.15 6.08E-25 271010000 70598 102815 93935 76406 109340 96947 102126 113936 79878 124286 TRUE FALSE FALSE 86302.28154 114838.3199 128685.4655 80579.86631 98453.72568 102022.995 80305.94581 85993.01736 95908.78192 93303.78751 0.92496011 1.230800195 1.37920945 0.863629103 1.055195382 1.093449663 0.860693311 0.921645516 1.027919493 1 16.50964803 -5.276335586 24.99401999 0.97494089 1.183570967 0.352901651 0.126328009 855.321857 1435123.634 0.036231955 0.05399541 5.29E-06 5.276335586 0.208630077 ATEPPS(ph)PDAGELSLASR ddPTM_HeLa_A486_30min_R1 1 ATEPPSPDAGELSLASR 17 0 Q8IYB8 Q8IYB8 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" 1 0 ATEPPS(1)PDAGELSLASR 289.1 6.03E-70 0 47589 54720 50355 17655 60741 48278 56634 54627 52553 48101 TRUE FALSE FALSE 44253.25685 50383.78791 69853.80455 41101.73223 53122.29739 42321.95121 42463.57419 42189.6246 57108.33635 36056.19652 1.227341237 1.397368352 1.937359214 1.139935329 1.473319499 1.173777473 1.177705313 1.170107462 1.583870232 1 15.1379596 ATESQGKDS(ph)AKS(ph)VPR ddPTM_HeLa_A486_30min_R1 1 ATESQGKDSAKSVPR 15 2 H0YKR2;Q7Z4M0 H0YKR2 REC114 Meiotic recombination protein REC114 2 0 AT(0.001)ES(0.014)QGKDS(0.994)AKS(0.992)VPR 64.705 0.011451 658060000 220860 205900 258600 141800 323360 243480 326150 276310 153240 344740 TRUE FALSE FALSE 205378.8545 189583.7341 358736.8455 330117.5662 282801.1736 213441.9131 244543.8203 213400.2448 166522.9666 258414.8601 0.794764103 0.733640991 1.388220652 1.277471296 1.094368851 0.825966096 0.946322592 0.82580485 0.644401667 1 17.97932951 -6.262457415 23.88763249 0.843725805 1.070262819 0.209606762 0.202272551 85.46607287 2005386.09 0.07606296 0.070948904 5.46E-07 6.262457415 0.226537015 ATEVS(ph)KTPEAR ddPTM_HeLa_A485_30min_R1 1 ATEVSKTPEAR 11 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 AT(0.001)EVS(0.572)KT(0.427)PEAR 95.981 0.00095044 1613900000 1393700 1341200 1080600 1953500 1961700 1486600 2239800 2271800 1210100 2502800 TRUE FALSE FALSE 1703723.757 1498041.673 1480358.908 2060214.758 1766386.26 1564436.077 1761248.433 1714637.488 1452955.97 1878898.021 0.906767551 0.797298021 0.787886778 1.096501639 0.940118219 0.832634906 0.937383729 0.912576132 0.773302199 1 20.84145533 ATEVSKT(ph)PEAR ddPTM_HeLa_A485_30min_R1 5 ATEVSKTPEAR 11 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 ATEVS(0.059)KT(0.941)PEAR;ATEVS(0.182)KT(0.818)PEAR;ATEVS(0.001)KT(0.999)PEAR;ATEVS(0.031)KT(0.969)PEAR;ATEVS(0.125)KT(0.875)PEAR ;;;; 162.46 8.07E-08 11008620000 6675170 6560890 4830830 9031630 9147000 6928120 9863940 10185440 5873670 12448190 TRUE FALSE FALSE 8160038.537 7328129.013 6617955.045 9525005.078 8236292.563 7290865.65 7756428.638 7687444.87 7052461.693 9345085.325 0.873190373 0.7841693 0.708174919 1.019252874 0.881350172 0.780181817 0.830000837 0.822619013 0.754670658 1 23.15577641 ATEVSKT(ph)PEAR ddPTM_HeLa_A486_30min_R1 6 ATEVSKTPEAR 11 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 ATEVS(0.004)KT(0.996)PEAR;ATEVS(0.142)KT(0.858)PEAR;ATEVS(0.059)KT(0.941)PEAR;ATEVS(0.339)KT(0.661)PEAR;ATEVS(0.078)KT(0.922)PEAR;ATEVS(0.073)KT(0.927)PEAR ;;;;; 161.04 8.79E-08 12854270000 10881940 10872760 6502620 5960260 11006850 11376830 15060630 13904530 8561220 15472330 TRUE FALSE FALSE 10119172.2 10011162.9 9020608.61 13875786.49 9626268.238 9973272.386 11292301.08 10738772.05 9303313.443 11597957.86 0.872496031 0.863183245 0.777775598 1.196399113 0.829996828 0.859916246 0.973645638 0.925919216 0.802150995 1 23.46736747 -9.052097141 0.009448017 1.874735524 4.98E-06 0.036477073 0.114493514 18016.39085 50.18669815 5154.494563 4802.914077 8.87E-10 9.052097141 -1.874730549 ATFSGS(ph)AGR ddPTM_HeLa_A485_30min_R1 2 ATFSGSAGR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 ATFS(0.002)GS(0.997)AGR;ATFS(0.001)GS(0.999)AGR ; 125.18 0.00061151 0 362330 451280 454460 390640 544430 439780 479760 545990 419820 488800 TRUE FALSE FALSE 442929.0585 504053.2704 622583.6657 411979.674 490224.6376 462806.2008 377255.3567 412085.0964 504074.0232 366951.1557 1.207051815 1.37362497 1.696639065 1.122709842 1.335939757 1.261220175 1.028080579 1.122997135 1.373681525 1 18.48522852 -5.990685269 1.243314506 1.149236393 1.394812652 0.260133513 0.168435679 0.634180724 2.048341531 0.075330778 0.086658066 1.02E-06 5.990685269 0.245576259 ATFSGS(ph)AGR ddPTM_HeLa_A486_30min_R1 4 ATFSGSAGR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 ATFS(0.003)GS(0.997)AGR;ATFS(0.001)GS(0.999)AGR;ATFS(0.043)GS(0.957)AGR;AT(0.001)FS(0.016)GS(0.983)AGR ;;; 131.45 0.0002305 1175690000 1080190 1290520 1245990 389248 1556050 1112550 1253680 1313000 1121660 1200790 TRUE FALSE FALSE 1004474.259 1188254.495 1728470.697 906189.0155 1360875.699 975294.8926 939996.0039 1014058.563 1218886.392 900104.3682 1.115953099 1.320129684 1.920300309 1.006759935 1.511908783 1.08353534 1.0443189 1.12660109 1.354161178 1 19.77973277 -6.274242447 24.45862275 1.124798079 1.381796965 0.211080752 0.244623856 965.2048427 1843894.524 0.085567435 0.075968827 5.32E-07 6.274242447 0.256998886 ATGAALT(ph)PTEER ddPTM_HeLa_A486_30min_R1 1 ATGAALTPTEER 12 0 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 ATGAALT(0.999)PT(0.001)EER 170.22 7.11E-10 452760000 377070 430490 306080 109480 444970 360880 369660 389880 306670 316490 TRUE FALSE FALSE 350639.3402 396376.4046 424602.3731 254874.9728 389157.7134 316358.2948 277167.1581 301112.835 333252.4025 237238.844 1.478001386 1.670790491 1.789767502 1.074339128 1.640362543 1.333501249 1.168304286 1.269239177 1.404712639 1 17.85598072 -1.004736208 0.077842994 0.638907211 3.327687064 0.422442518 0.190366802 192.9496902 1.101525603 5.929698109 55.99068711 0.098915373 1.004736208 2.688779852 ATGAALTPT(ph)EERR ddPTM_HeLa_A485_30min_R1 1 ATGAALTPTEERR 13 1 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 ATGAALT(0.438)PT(0.562)EERR 69.258 0.0029992 0 135370 156960 148550 103160 178340 127600 135010 160400 118580 146530 TRUE FALSE FALSE 165482.5895 175315.1066 203504.8267 108795.3696 160583.8434 134280.9387 106164.0106 121061.6485 142377.9183 110002.7677 1.504349326 1.593733597 1.849997332 0.98902393 1.459816392 1.220705092 0.965103086 1.100532751 1.294312146 1 16.7471803 -5.263988432 24.99943542 1.15977656 1.643797441 0.659924043 0.165045229 140.0408266 1373432.171 0.046765568 0.073146811 5.45E-06 5.263988432 0.484020881 ATGDGS(ph)S(ph)PELPSLER ddPTM_HeLa_A485_30min_R1 2 ATGDGSSPELPSLER 15 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 2 0 ATGDGS(1)S(1)PELPSLER;ATGDGS(1)S(1)PELPSLER ; 125.22 5.68E-05 391300000 713070 798750 781900 962770 1102530 784830 1045750 994220 836930 1189150 TRUE FALSE FALSE 871689.9614 892156.8643 1071157.348 1015363.687 992758.242 825922.4852 822316.9695 750385.9861 1004894.174 892716.7897 0.97644625 0.999372785 1.199884846 1.137386122 1.112064043 0.925178617 0.921139805 0.840564437 1.125658424 1 19.76784303 -6.260872691 24.99999941 0.949958003 1.089561441 0.307068689 0.090928633 61.4335058 2710227.929 0.031944575 0.03013052 5.48E-07 6.260872691 0.139603439 ATGDGS(ph)S(ph)PELPSLER ddPTM_HeLa_A486_30min_R1 1 ATGDGSSPELPSLER 15 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 2 0 ATGDGS(1)S(1)PELPSLER 199.84 5.96E-25 313940000 265560 287880 225630 107050 292230 265560 287300 291240 252180 292650 TRUE FALSE FALSE 246945.6154 265067.3404 312999.9786 249217.81 255575.7885 232797.9072 215414.5013 224931.0097 274039.1654 219368.5352 1.125711193 1.208319781 1.426822577 1.13606908 1.165052172 1.061218315 0.981975383 1.025356757 1.249218195 1 17.74299708 -5.859263554 1.953357496 1.06244633 1.245869102 0.362794739 0.102098506 0.359978371 2.819431025 0.037020451 0.044939103 1.38E-06 5.859263554 0.183422772 ATGDGSS(ph)PELPSLER ddPTM_HeLa_A485_30min_R1 2 ATGDGSSPELPSLER 15 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 ATGDGS(0.029)S(0.971)PELPSLER;ATGDGS(0.037)S(0.963)PELPSLER ; 208.39 1.29E-25 541120000 468500 513740 506740 551210 720980 563660 652780 636720 530800 761940 TRUE FALSE FALSE 572716.2087 573817.4241 694204.2132 581321.2066 649196.6997 593172.366 513308.2203 480563.4217 637326.6912 572002.3805 1.001247946 1.00317314 1.213638679 1.016291586 1.134954542 1.03701031 0.897388259 0.840142346 1.114202865 1 19.12566163 -6.586188455 6.11601145 0.95054618 1.075644397 0.24827775 0.090089921 0.260556252 18.5935225 0.03433658 0.026524401 2.59E-07 6.586188455 0.125098217 ATGDGSS(ph)PELPSLER ddPTM_HeLa_A486_30min_R1 2 ATGDGSSPELPSLER 15 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 ATGDGS(0.014)S(0.986)PELPSLER;ATGDGS(0.003)S(0.997)PELPSLER ; 247.38 1.48E-41 610440000 681420 819700 581840 244950 872500 724170 772210 797880 671750 693590 TRUE FALSE FALSE 633655.9769 754743.9867 807144.0302 570255.9791 763062.9143 634829.2682 578994.8904 616220.1416 729977.8309 519910.5495 1.218778841 1.451680462 1.552467114 1.096834791 1.467681152 1.221035559 1.113643281 1.18524262 1.404045045 1 18.9879039 -6.433115492 7.209491881 1.187853996 1.358589835 0.244285507 0.152902928 0.416582818 29.10308164 0.053373556 0.046876708 3.69E-07 6.433115492 0.170735839 ATGEPGTFVCTSHLPAAAS(ph)ASPK ddPTM_HeLa_A486_30min_R1 1 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 0 ATGEPGTFVCTSHLPAAAS(0.65)AS(0.35)PK 62.582 0.012722 156560000 115680 136150 72380 63079 118340 129750 175130 177930 118870 223820 TRUE FALSE FALSE 107571.4294 125360.9782 100407.4744 146851.0998 103496.6937 113742.7642 131310.6217 137419.2232 129173.7473 167774.0152 0.641168594 0.747201395 0.598468567 0.875291085 0.616881545 0.677952209 0.782663641 0.819073341 0.769927019 1 17.35615976 -8.838084533 0.336565689 1.060003744 0.675749921 0.573819431 0.077813987 3.025474122 0.549869052 0.338209792 0.076298204 1.45E-09 8.838084533 -0.384253823 ATGEPGTFVCTSHLPAAASAS(ph)PK ddPTM_HeLa_A485_30min_R1 4 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 0 ATGEPGTFVCTSHLPAAAS(0.08)AS(0.92)PK;ATGEPGTFVCTSHLPAAAS(0.02)AS(0.98)PK;ATGEPGTFVCTSHLPAAAS(0.071)AS(0.929)PK;ATGEPGTFVCTSHLPAAAS(0.003)AS(0.997)PK ;;; 137.03 7.43E-07 1076610000 784965 761681 622625 1354020 1028630 885744 1382870 1304130 699699 1887050 TRUE FALSE FALSE 959577.7562 850752.9672 852959.8971 1427986.684 926215.9855 932120.1862 1087408.527 984290.0727 840122.1713 1416643.164 0.677360242 0.600541469 0.602099328 1.008007324 0.653810366 0.657978106 0.767595225 0.69480452 0.593037254 1 20.43404497 -10.99193619 2.941385654 1.285427764 0.698545231 0.382980159 0.116052948 104551048.8 90628838.09 202587514.3 0.029118608 1.02E-11 10.99193619 -0.586882534 ATGEPGTFVCTSHLPAAASAS(ph)PK ddPTM_HeLa_A486_30min_R1 3 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 0 ATGEPGTFVCTSHLPAAAS(0.403)AS(0.597)PK;ATGEPGTFVCTSHLPAAAS(0.001)AS(0.999)PK;ATGEPGTFVCTSHLPAAAS(0.01)AS(0.99)PK ;; 167.28 1.58E-14 1098460000 1173300 1174660 657915 713528 1130670 1406230 1868500 1700720 1075241 2375660 TRUE FALSE FALSE 1091057.729 1081575.664 912677.3076 1661129.244 988850.8255 1232743.64 1400981.537 1313503.182 1168443.756 1780779.273 0.61268555 0.607360878 0.512515684 0.932810298 0.555291069 0.692249544 0.786723856 0.737600219 0.656141821 1 20.76407728 -14 0.133401672 2.063413501 0.554505896 0.452482177 0.111371832 132.129707 1.099714217 37.60045503 0.779811909 1.00E-14 14 -1.508907605 ATGISFAIHGNFSGTK ddPTM_HeLa_A486_30min_R1 1 ATGISFAIHGNFSGTK 16 0 Q15393;Q15393-2;H3BMB0;I3L4G7 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 97.579 0.015426 0 24318 24755 19852 8227.3 32760 24644 28882 28080 20733 23553 FALSE FALSE TRUE 22613.43378 22793.32364 27539.22605 19153.57018 28650.93533 21603.67384 21655.41812 21686.79698 22530.15313 17655.1755 1.280838799 1.291027872 1.559838703 1.084869997 1.6228066 1.223645375 1.226576203 1.228353521 1.276121732 1 14.10780354 -8.530222298 0.419650257 0.971344662 1.360279946 0.310183649 0.148836405 2.796978518 0.922829389 0.317836903 0.098776761 2.95E-09 8.530222298 0.388935284 ATGNDLRPPPPS(ph)PSSDLTHPMK ddPTM_HeLa_A485_30min_R1 2 ATGNDLRPPPPSPSSDLTHPMK 22 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 ATGNDLRPPPPS(0.72)PS(0.14)S(0.14)DLTHPMK;ATGNDLRPPPPS(0.93)PS(0.031)S(0.031)DLT(0.007)HPMK ; 117.08 3.95E-05 463070000 501839 526199 451301 478560 674300 525950 645390 705960 438667 620480 TRUE FALSE FALSE 613471.3542 587733.3957 618256.0201 504702.521 607164.3244 553487.9287 507497.1541 532822.2031 526703.4432 465805.7551 1.317011109 1.261756407 1.327282914 1.083504262 1.303471067 1.188237635 1.08950383 1.143872091 1.13073623 1 18.82936894 -1 0.083607607 0.837350994 2.153034657 0.642951267 0.064325641 111.4342503 0.677404602 1.527223014 16.8799447 0.1 1 1.315683663 ATGNDLRPPPPS(ph)PSSDLTHPMK ddPTM_HeLa_A486_30min_R1 3 ATGNDLRPPPPSPSSDLTHPMK 22 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 ATGNDLRPPPPS(0.965)PS(0.028)S(0.006)DLTHPMK;ATGNDLRPPPPS(0.678)PS(0.142)S(0.142)DLT(0.037)HPMK;ATGNDLRPPPPS(0.728)PS(0.207)S(0.06)DLT(0.005)HPMK ;; 167.27 4.03E-14 1093810000 712730 710080 568288 208565 827320 745580 864800 860920 624400 787950 TRUE FALSE FALSE 662771.3075 653810.6747 788344.3329 485549.8603 723549.8111 653597.9201 648417.8931 664907.3098 678523.4947 590642.1913 1.122119817 1.106948817 1.334724042 0.822071074 1.225022225 1.106588608 1.097818447 1.125736223 1.14878941 1 19.17192489 -10.13208214 3.251660231 0.999825961 1.120246041 0.082033175 0.121491518 22896311.03 34621996.27 43561.57809 0.029589402 7.38E-11 10.13208214 0.120420081 ATHGSNS(ph)LPSSAR ddPTM_HeLa_A485_30min_R1 4 ATHGSNSLPSSAR 13 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 ATHGS(0.007)NS(0.992)LPSSAR;ATHGS(0.001)NS(0.999)LPSSAR;ATHGS(0.004)NS(0.995)LPS(0.001)S(0.001)AR;ATHGS(0.071)NS(0.929)LPSSAR ;;; 116.06 0.00013772 3002920000 977760 1817520 2005140 462730 2004160 1263240 1298440 1525880 1590240 838380 TRUE FALSE FALSE 1195259.339 2030063.154 2746924.727 488007.7682 1804618.793 1329381.293 1021017.687 1151655.538 1909386.581 629387.2952 1.899083995 3.225459378 4.364442606 0.775369589 2.867262824 2.112183235 1.622240701 1.829804234 3.03372279 1 19.26358853 -5.261608173 25 1.964718409 3.169241661 0.309088717 0.866302234 19.34418248 2865216.812 0.235055644 0.375234889 5.48E-06 5.261608173 1.204523253 ATHGSNS(ph)LPSSAR ddPTM_HeLa_A486_30min_R1 4 ATHGSNSLPSSAR 13 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 ATHGS(0.131)NS(0.737)LPS(0.066)S(0.066)AR;ATHGS(0.001)NS(0.999)LPSSAR;ATHGS(0.068)NS(0.889)LPS(0.03)S(0.012)AR;ATHGS(0.441)NS(0.558)LPS(0.001)SAR ;;; 119.47 8.19E-05 1031113000 845060 962760 1050480 104470 1229330 659345 793080 812060 893330 444806 TRUE FALSE FALSE 785825.6579 886467.3913 1457253.989 243211.4396 1075135.968 578001.7176 594642.9957 627171.6651 970764.5637 333423.6824 2.356838159 2.658681546 4.370577334 0.729436607 3.224533904 1.733535283 1.783445589 1.881005154 2.911504536 1 18.34699705 -5.262783694 24.99987144 1.975537672 3.081697193 0.297956186 0.860839393 162.4194293 3020491.888 0.230081153 0.363410804 5.46E-06 5.262783694 1.106159521 ATIAGGGVIPHIHK ddPTM_HeLa_A485_30min_R1 3 ATIAGGGVIPHIHK 14 0 P0C0S5;Q71UI9;Q71UI9-3;Q71UI9-4 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V 0 0 ;; ;; 121.28 0.00012605 449695000 434212 569291 485496 450303 633539 609156 688300 801877 521778 710727 FALSE FALSE TRUE 530800.9614 635864.6303 665101.1736 474901.9127 570461.6327 641050.4662 541239.0821 605215.4085 626494.0586 533555.8389 0.994836759 1.191748987 1.246544645 0.890069751 1.069169506 1.201468374 1.014400073 1.134305661 1.174186492 1 19.02527974 ATIAGGGVIPHIHK ddPTM_HeLa_A486_30min_R1 3 ATIAGGGVIPHIHK 14 0 P0C0S5;Q71UI9;Q71UI9-3;Q71UI9-4 P0C0S5 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V 0 0 ;; ;; 158.2 1.99E-08 172074000 415793 456252 376958 149513 628045 412369 525231 502797 416595 497923 FALSE FALSE TRUE 386648.0579 420096.9299 522926.2329 348073.82 549269.7398 361495.1054 393812.6485 388321.0991 452705.79 373239.8399 1.035923866 1.125541502 1.401046129 0.932574133 1.47162677 0.96853301 1.055119541 1.040406349 1.212908542 1 18.50974346 ATIS(ph)DEEIER ddPTM_HeLa_A485_30min_R1 5 ATISDEEIER 10 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 0 ATIS(1)DEEIER;AT(0.005)IS(0.995)DEEIER;ATIS(1)DEEIER;AT(0.001)IS(0.999)DEEIER;AT(0.001)IS(0.999)DEEIER ;;;; 235.47 9.45E-21 15305280000 3064720 3955360 4112980 3274860 4929130 4152420 4861660 4917620 3686010 4274930 TRUE FALSE FALSE 3746456.391 4417904.945 5634542.457 3453757.309 4438368.51 4369834.29 3822926.625 3711565.984 4425758.397 3209268.625 1.167386351 1.376608025 1.755709202 1.076182057 1.382984421 1.361629331 1.191214283 1.156514589 1.379055141 1 21.61381312 -9.260349042 0.23947148 0.853443595 1.408456533 0.229004989 0.179573048 13.48922814 1.114919898 2.000513465 0.379373115 5.49E-10 9.260349042 0.555012938 ATIS(ph)DEEIER ddPTM_HeLa_A486_30min_R1 4 ATISDEEIER 10 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 0 AT(0.001)IS(0.999)DEEIER;ATIS(1)DEEIER;ATIS(1)DEEIER;ATIS(1)DEEIER ;;; 268.32 4.09E-27 13337400000 2807590 3555730 3446180 1132770 4025940 3138010 3542900 3773590 2864540 3297590 TRUE FALSE FALSE 2610792.439 3273961.005 4780633.188 2637145.807 3520969.065 2750874.231 2656428.947 2914425.934 3112840.634 2471852 1.056209045 1.324497181 1.934028893 1.06687043 1.424425518 1.112879829 1.07467152 1.179045482 1.259315134 1 21.23716094 -6.104684677 1.734052805 1.132195343 1.394333105 0.179032725 0.238292083 0.644604076 3.868874674 0.096482454 0.098643774 7.86E-07 6.104684677 0.262137762 ATK(ac)MAHSMRSIQNGQPPTSTPASSGSK ddPTM_HeLa_A485_30min_R1 1 ATKMAHSMRSIQNGQPPTSTPASSGSK 27 2 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 0 1 ATK(1)MAHSMRSIQNGQPPTSTPASSGSK 69.619 0.009827 8476000 8516.8 5671.5 5298.4 10331 6342.9 10298 12820 15389 8020.1 17281 FALSE TRUE FALSE 10411.33278 6334.73259 7258.498645 10895.35637 5711.378605 10837.18736 10080.90227 11614.82362 9629.660505 12973.16473 0.802528372 0.488295086 0.559501 0.839837973 0.440245593 0.835354178 0.777058064 0.895296087 0.742275359 1 13.66324284 -6.370722753 11.6363796 0.839340439 0.626640002 0.413457246 0.133051578 0.623219204 63.10438003 0.044625484 0.039346023 4.26E-07 6.370722753 -0.212700436 ATKVPLVAEK(ac)PLKEPK ddPTM_HeLa_A486_30min_R1 1 ATKVPLVAEKPLKEPK 16 3 P41250 P41250 GARS Glycine--tRNA ligase 0 1 ATKVPLVAEK(0.979)PLK(0.021)EPK 74.786 0.024056 79225000 48352 88100 49896 57217 143470 102900 152380 157050 59145 103080 FALSE TRUE FALSE 44962.77449 81118.63515 69217.06746 133204.0676 125474.6548 90205.24421 114252.9123 121293.1434 64271.73622 77268.09706 0.581906067 1.049833479 0.895803962 1.723920643 1.623886954 1.167431937 1.478655702 1.569770034 0.831801722 1 16.23758525 -5.144138227 7.672509776 1.375575756 0.855418193 0.385510289 0.287135878 0.273509588 16.31975809 0.076699104 0.133635399 7.18E-06 5.144138227 -0.520157563 ATLDEEDLVDS(ph)LSEGDAYPNGLQVNFHSPR ddPTM_HeLa_A485_30min_R1 2 ATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 30 0 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 ATLDEEDLVDS(0.55)LS(0.45)EGDAYPNGLQVNFHSPR;ATLDEEDLVDS(0.997)LS(0.003)EGDAYPNGLQVNFHSPR ; 212.64 1.19E-29 511050000 222648 273207 206306 247830 235602 263097 357260 353150 233776 444850 TRUE FALSE FALSE 272175.2795 305156.1821 282627.1745 261368.3254 212144.6376 276872.3521 280928.4825 266539.4088 280692.6989 333957.0819 0.815000772 0.913758679 0.846297892 0.782640464 0.635245213 0.829065671 0.841211334 0.798124739 0.840505305 1 18.34930318 -8.278367905 2.466488238 1.000003767 0.807649602 0.423387912 0.066991301 1.677473506 13.32478261 0.070565374 0.019107916 5.27E-09 8.278367905 -0.192354166 ATLDEEDLVDS(ph)LSEGDAYPNGLQVNFHSPR ddPTM_HeLa_A486_30min_R1 2 ATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 30 0 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 ATLDEEDLVDS(0.997)LS(0.003)EGDAYPNGLQVNFHSPR;ATLDEEDLVDS(0.986)LS(0.014)EGDAYPNGLQVNFHSPR ; 259.81 1.54E-63 484140000 142760 170513 157534 55951 176633 160579 163347 156632 179377 188109 TRUE FALSE FALSE 132753.2612 157000.9289 218535.3837 130256.7556 154478.0421 140768.3956 122475.8529 120970.3129 194925.5428 141005.282 0.941477222 1.113440054 1.54983828 0.923772172 1.095547911 0.998320018 0.868590532 0.857913343 1.382398872 1 17.10538968 ATLDEEDLVDSLS(ph)EGDAYPNGLQVNFHSPR ddPTM_HeLa_A485_30min_R1 1 ATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 30 0 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 ATLDEEDLVDS(0.004)LS(0.996)EGDAYPNGLQVNFHSPR 210.9 1.93E-29 336640000 105950 143160 100970 118850 100120 124410 157170 180400 109220 249350 TRUE FALSE FALSE 129518.212 159901.3167 138323.0047 125342.4746 90151.70126 130923.9152 123589.3455 136156.6171 131139.4522 187191.6339 0.691901712 0.854211875 0.738937963 0.669594425 0.481601124 0.699411146 0.660229001 0.727364863 0.70056257 1 17.51415643 -8.89242477 1.192950511 1.000914648 0.688181785 0.532553896 0.086834662 7.494169159 9.114015536 0.110886708 0.02779326 1.28E-09 8.89242477 -0.312732863 ATLDEEDLVDSLS(ph)EGDAYPNGLQVNFHSPR ddPTM_HeLa_A486_30min_R1 2 ATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 30 0 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 ATLDEEDLVDS(0.132)LS(0.868)EGDAYPNGLQVNFHSPR;ATLDEEDLVDS(0.191)LS(0.809)EGDAYPNGLQVNFHSPR ; 140.34 1.99E-07 396460000 179022 195778 203981 68184 248500 220457 199179 203964 241740 258850 TRUE FALSE FALSE 166473.4823 180263.8383 282967.906 158735.7978 217330.8128 193259.2568 149342.3075 157525.8497 262694.2178 194032.2752 0.857967996 0.929040481 1.458354832 0.818089659 1.120075578 0.996016032 0.76967766 0.81185385 1.353868668 1 17.56593712 -6.519869986 24.9640757 0.955982025 1.043608119 0.00632053 0.221820263 550.1654877 4564878.795 0.083624428 0.066050861 3.02E-07 6.519869986 0.087626093 ATLDEEDLVDSLSEGDAYPNGLQVNFHS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 30 0 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 ATLDEEDLVDS(0.001)LS(0.001)EGDAY(0.089)PNGLQVNFHS(0.908)PR 46.32 0.033421 32284000 20317 20467 19929 10044 21554 20890 20584 21321 21866 22425 TRUE FALSE FALSE 18892.88322 18845.12038 27646.04252 23382.9396 18850.49634 18312.80419 15433.66548 16466.67373 23761.36249 16809.63404 1.123931858 1.121090461 1.644654634 1.391043942 1.121410275 1.089423134 0.918144051 0.979597396 1.413556204 1 14.0370007 -5.863605899 5.179060733 1.072932712 1.328270731 0.275654442 0.185366962 0.286809346 12.12306302 0.061293626 0.070277792 1.37E-06 5.863605899 0.255338019 ATLLNVPDLSDS(ph)IHS(ph)ANASER ddPTM_HeLa_A485_30min_R1 2 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 ATLLNVPDLS(0.007)DS(0.993)IHS(1)ANASER;ATLLNVPDLSDS(1)IHS(1)ANASER ; 119.89 2.07E-05 118470000 80418 117894 86074 80728 86717 85830 87750 88246 83800 100594 TRUE FALSE FALSE 98306.70666 131680.6778 117916.3544 85137.96623 78083.151 90323.92608 69001.49565 66603.53014 100617.8913 75517.7671 1.301769245 1.743704599 1.561438572 1.127389878 1.033970601 1.196061928 0.913712075 0.881958415 1.332373761 1 16.20452849 -5.303007308 4.321861501 1.056500348 1.559937322 0.645130109 0.158647162 0.121433072 5.136686921 0.044316084 0.070010096 4.98E-06 5.303007308 0.503436974 ATLLNVPDLSDS(ph)IHS(ph)ANASER ddPTM_HeLa_A486_30min_R1 2 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 ATLLNVPDLS(0.014)DS(0.986)IHS(0.997)ANAS(0.003)ER;ATLLNVPDLS(0.003)DS(0.997)IHS(0.988)ANAS(0.012)ER ; 96.44 0.00064631 97725000 69628 80844 53671 18988.9 64419 63365 72566 66026 66692 79267 TRUE FALSE FALSE 64747.43676 74437.62701 74453.84856 44207.11885 56338.96834 55547.67055 54409.21928 50993.32114 72472.91626 59418.02726 1.089693478 1.252778499 1.253051506 0.744001793 0.948179718 0.934862248 0.915702217 0.858212961 1.219712596 1 15.85861309 -5.240011953 24.86339868 0.93829048 1.203934929 0.478473583 0.120679755 614.4225419 712946.5756 0.031874716 0.055139832 5.75E-06 5.240011953 0.265644448 ATLLNVPDLSDS(ph)IHSANASER ddPTM_HeLa_A485_30min_R1 2 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ATLLNVPDLS(0.005)DS(0.994)IHS(0.001)ANASER;ATLLNVPDLSDS(1)IHSANASER ; 174.06 3.66E-14 216699000 146706 193589 149149 119495 162064 140374 166109 181886 162763 176660 TRUE FALSE FALSE 179340.2436 216227.5495 204325.4217 126022.7093 145928.3391 147723.7656 130618.4552 137278.1733 195428.0411 132621.9132 1.352267052 1.630405899 1.540661093 0.950240471 1.100333539 1.113871471 0.984893462 1.035109282 1.473572779 1 17.01695965 -5.251264308 24.83990175 1.092011282 1.520040849 0.609375566 0.151712598 411.418076 1004372.582 0.040632319 0.069350143 5.61E-06 5.251264308 0.428029567 ATLLNVPDLSDS(ph)IHSANASER ddPTM_HeLa_A486_30min_R1 1 ATLLNVPDLSDSIHSANASER 21 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ATLLNVPDLSDS(1)IHSANASER 174.06 3.66E-14 71327000 83914 87656 67419 19543 74981 80598 74864 77552 68952 95152 TRUE FALSE FALSE 78032.06193 80709.81932 93525.44234 45497.09165 65576.18381 70654.63822 56132.23537 59895.10255 74928.81488 71325.31986 1.094030312 1.131573184 1.311251636 0.637881355 0.91939558 0.990596865 0.786988905 0.839745306 1.050521961 1 16.12212669 -5.247737838 24.9985793 0.883838182 1.174213855 0.535169584 0.123606056 608.8115366 1110780.008 0.033133804 0.057001496 5.65E-06 5.247737838 0.290375673 ATLLNVPDLSDSIHSANASERDDISEIQS(ph)LASDHSGR ddPTM_HeLa_A485_30min_R1 1 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR 37 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ATLLNVPDLSDSIHS(0.015)ANAS(0.015)ERDDIS(0.053)EIQS(0.757)LAS(0.109)DHS(0.051)GR 93.059 4.44E-05 106850000 14761 30172 36408 8029.4 43194 23678 27302 31907 27063 20168 TRUE FALSE FALSE 18044.53353 33700.35294 49876.83426 8468.02579 38893.4537 24917.74347 21468.70466 24081.75822 32494.29586 15140.48876 1.19180654 2.225843132 3.294268437 0.559296726 2.568837394 1.645768763 1.417966421 1.590553555 2.146185395 1 13.88612416 -11.02908932 0.199953563 1.67E-15 2.065893857 0.104181086 0.725464813 78.42599127 2.281005226 39.45060643 1.971936018 9.35E-12 11.02908932 2.065893857 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHS(ph)GR ddPTM_HeLa_A486_30min_R1 1 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR 37 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ATLLNVPDLSDSIHS(0.001)ANAS(0.004)ERDDIS(0.025)EIQS(0.074)LAS(0.221)DHS(0.674)GR 108.57 3.39E-05 43200000 18180 21425 24005 1997 26571 16150 17751 21060 14899 11661 TRUE FALSE FALSE 16905.67588 19727.20497 33300.37888 4649.116923 23238.21742 14157.5772 13309.51205 16265.09774 16190.45732 8741.0097 1.934064423 2.256856547 3.809671882 0.531874129 2.658527815 1.619672977 1.522651559 1.860780195 1.852241088 1 13.09358422 -6.728202892 0.113732054 0.265379998 3.460145829 0.182569297 0.770204423 20.98371096 1.486289431 15.91541029 22.62552663 1.87E-07 6.728202892 3.194765832 ATLPS(ph)PDKLPGFK ddPTM_HeLa_A485_30min_R1 1 ATLPSPDKLPGFK 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 ATLPS(1)PDKLPGFK 107.98 0.00017925 726060000 472230 339500 227860 792440 492730 471990 735140 709010 364540 1171400 TRUE FALSE FALSE 577275.9343 379201.5717 312154.896 835728.9906 443672.0711 496702.6666 578071.3335 535124.1858 437699.8342 879391.538 0.656449271 0.43120903 0.354966909 0.950349139 0.504521652 0.564825388 0.657353759 0.608516415 0.497730323 1 19.74614612 -11.14957585 2.325210131 1.933711323 0.580867879 0.402158234 0.15338529 10147141.47 2477758.567 49934450.34 0.038238314 7.09E-12 11.14957585 -1.352843445 ATLPS(ph)PDKLPGFK ddPTM_HeLa_A486_30min_R1 2 ATLPSPDKLPGFK 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 ATLPS(1)PDKLPGFK;ATLPS(1)PDKLPGFK ; 165.58 3.41E-12 1517000000 2785900 2441400 1050070 2071850 2128510 3203900 4325000 3869500 1998590 5674000 TRUE FALSE FALSE 2590622.796 2247934.573 1456685.226 4823371.506 1861532.428 2808635.393 3242839.255 2988499.321 2171829.39 4253193.468 0.609100624 0.528528643 0.342492115 1.134058806 0.437678756 0.66035919 0.762448094 0.702648338 0.510634987 1 22.02011505 -14 0.225982766 2.857924794 0.59500279 0.216569939 0.206498916 251.3081899 2.516608469 213.9464785 0.368179242 1.00E-14 14 -2.262922004 ATLS(ph)NPKPQK ddPTM_HeLa_A485_30min_R1 1 ATLSNPKPQK 10 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 AT(0.042)LS(0.958)NPKPQK 43.991 0.031766 133770000 175660 171270 130770 255720 237470 194540 260880 268730 167410 294360 TRUE FALSE FALSE 214734.961 191298.5366 179147.2648 269689.3361 213826.653 204725.8136 205140.8568 202823.5461 201007.6514 220981.4693 0.971732886 0.865676825 0.810689083 1.220416069 0.967622551 0.926438829 0.92831701 0.917830562 0.909613155 1 17.75356587 ATLSSTSGLDLMSESGEGEIS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 ATLSSTSGLDLMSESGEGEISPQR 24 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 ATLSSTSGLDLMSESGEGEIS(1)PQR 217.26 4.42E-38 161900000 141300 168590 174380 171120 194310 156590 192120 198380 173980 220930 TRUE FALSE FALSE 172731.6975 188305.134 238890.4186 180467.8523 174963.8141 164788.8103 151071.9925 149726.994 208896.1902 165856.2169 1.041454464 1.135351677 1.440346482 1.088098207 1.054912607 0.993564265 0.910861199 0.902751773 1.259501718 1 17.33957357 -5.511935755 19.79129789 1.014315944 1.209604513 0.284317312 0.131369311 41.43787379 74942.98352 0.03869377 0.05363609 3.08E-06 5.511935755 0.195288569 ATLSSTSGLDLMSESGEGEIS(ph)PQR ddPTM_HeLa_A486_30min_R1 3 ATLSSTSGLDLMSESGEGEISPQR 24 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 ATLSSTSGLDLMSESGEGEIS(1)PQR;ATLSSTSGLDLMSESGEGEIS(1)PQR;ATLSSTSGLDLMSESGEGEIS(1)PQR ;; 225.68 2.19E-38 441580000 263796 328125 281349 134417 328327 272303 302648 321068 245158 308409 TRUE FALSE FALSE 245305.2626 302123.18 390294.8676 312929.5691 287145.1661 238709.0244 226922.2693 247967.8253 266408.4928 231181.379 1.061094383 1.306866415 1.688262564 1.353610617 1.2420774 1.032561643 0.981576762 1.072611585 1.152378682 1 17.81866567 -6.055338415 2.880117218 1.048324456 1.37120275 0.484796709 0.148414087 0.244230166 4.01503022 0.055188613 0.057939195 8.80E-07 6.055338415 0.322878294 ATLSSTSGLDLMSESGEGEIS(ph)PQREVSR ddPTM_HeLa_A485_30min_R1 7 ATLSSTSGLDLMSESGEGEISPQREVSR 28 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 ATLSSTSGLDLMSES(0.001)GEGEIS(0.91)PQREVS(0.089)R;ATLSSTSGLDLMS(0.001)ES(0.033)GEGEIS(0.951)PQREVS(0.016)R;ATLSSTSGLDLMSESGEGEIS(1)PQREVSR;ATLSSTSGLDLMSESGEGEIS(1)PQREVSR;ATLSSTSGLDLMSESGEGEIS(0.999)PQREVS(0.001)R;ATLSSTSGLDLMSES(0.011)GEGEIS(0.988)PQREVSR;ATLSSTSGLDLMS(0.005)ES(0.179)GEGEIS(0.813)PQREVS(0.003)R ;;;;;; 303.35 8.23E-93 4233320000 361915 783551 774050 383794 1198382 975822 1161001 1992412 773471 587888 TRUE FALSE FALSE 442421.7432 875180.4735 1060403.306 404759.6944 1079066.88 1026914.531 912943.6518 1503769.833 928699.535 441338.3409 1.002454811 1.983014827 2.402699262 0.917118811 2.444987848 2.326819213 2.06857997 3.407294798 2.104280206 1 18.75152556 -3.782937119 0.578784056 2.280001732 4.36E-13 0.131793204 0.698478986 11.81396418 2.019628298 0.349562392 20.32429124 0.00016484 3.782937119 -2.280001732 ATLSSTSGLDLMSESGEGEIS(ph)PQREVSR ddPTM_HeLa_A486_30min_R1 5 ATLSSTSGLDLMSESGEGEISPQREVSR 28 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 ATLSSTSGLDLMS(0.001)ES(0.005)GEGEIS(0.965)PQREVS(0.03)R;ATLSSTSGLDLMSESGEGEIS(1)PQREVSR;ATLSSTSGLDLMSESGEGEIS(1)PQREVSR;ATLSSTSGLDLMSES(0.007)GEGEIS(0.984)PQREVS(0.009)R;ATLSSTSGLDLMSESGEGEIS(0.999)PQREVS(0.001)R ;;;; 347.96 4.82E-146 2472140000 415278 403809 528657 226211 1000130 412511 616960 674400 323036 425723 TRUE FALSE FALSE 386169.1567 371809.7042 733367.1483 526630.6401 874684.3696 361619.5869 462590.0825 520853.842 351037.0206 319119.1898 1.21010948 1.165112334 2.298097926 1.650263152 2.740933161 1.133180324 1.449584034 1.632160831 1.100018525 1 18.28373584 -7.60686603 0.952368256 0.998724481 1.737109729 0.200366406 0.48534051 0.905368719 1.61174919 0.469369696 0.171997092 2.47E-08 7.60686603 0.738385248 ATLTQMLNVIFAR ddPTM_HeLa_A485_30min_R1 2 ATLTQMLNVIFAR 13 0 Q9Y6D6 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 0 ; ; 174.42 1.09E-07 8833600 5935.1 8413.5 8830.9 7055.6 9941.9 7193.9 8699.1 8778.9 5564.9 10197.7 FALSE FALSE TRUE 7255.342519 9397.385637 12097.81739 7441.029562 8952.049528 7570.56148 6840.46622 6625.86101 6681.724386 7655.601065 0.947716901 1.227517677 1.580257029 0.971971959 1.169346398 0.988891847 0.893524383 0.865491939 0.872788998 1 12.90229994 -6.198556059 1.353790191 0.893132205 1.222799457 0.379986431 0.165095916 0.434910079 1.616565672 0.077598645 0.073819063 6.33E-07 6.198556059 0.329667252 ATLTQMLNVIFAR ddPTM_HeLa_A486_30min_R1 2 ATLTQMLNVIFAR 13 0 Q9Y6D6 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 0 0 ; ; 138.99 0.00018887 9339900 6616.4 10886.1 7907.9 6013.6 10058.2 10525.9 9541.8 9347.6 8688.6 10235.6 FALSE FALSE TRUE 6152.624527 10023.44579 10970.05066 13999.96471 8796.606767 9227.321478 7154.340717 7219.355537 9441.734844 7672.539137 0.801902006 1.306405299 1.429780997 1.824684692 1.146505298 1.202642478 0.932460635 0.940934338 1.230588033 1 12.90548838 -6.316292415 2.440239398 1.030201312 1.346367831 0.203921412 0.251087226 0.464355864 5.436624504 0.102930316 0.091747323 4.83E-07 6.316292415 0.31616652 ATLTQMLNVIFTR ddPTM_HeLa_A485_30min_R1 1 ATLTQMLNVIFTR 13 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 0 123.95 0.00072466 2178300 1466.3 1838.8 2539.3 1349.5 2056 1628.5 2456.6 1469.5 1350.1 1982 FALSE FALSE TRUE 1792.473376 2053.831665 3478.692739 1423.219768 1851.297421 1713.765742 1931.727341 1109.102821 1621.052686 1487.923876 1.204680834 1.380333831 2.337950748 0.956513832 1.244215145 1.151783212 1.298270276 0.745402933 1.089472864 1 10.539085 ATLTQMLNVIFTR ddPTM_HeLa_A486_30min_R1 1 ATLTQMLNVIFTR 13 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 0 0 111.12 0.0032657 3050500 1434.1 1861.3 1346.5 799.61 2564.1 1751.4 2795.5 1951.9 1156.1 1807.7 FALSE FALSE TRUE 1333.576996 1713.803809 1867.900861 1861.53249 2242.486669 1535.330075 2096.036332 1507.49498 1256.311679 1355.040154 0.9841605 1.264762379 1.378483771 1.373784005 1.65492267 1.133051349 1.546844443 1.112509453 0.927139816 1 10.40411989 -7.489172886 6.167056384 0.978813398 1.339207906 0.415577937 0.179703895 0.173812851 20.8058482 0.105864825 0.047171895 3.24E-08 7.489172886 0.360394508 ATLYVTAIEDR ddPTM_HeLa_A486_30min_R1 1 ATLYVTAIEDR 11 0 E9PNR9;E9PQ98;E9PIX6;H0YDE4;E9PKG1;Q99873-2;Q99873-3;Q99873 E9PNR9 PRMT1 Protein arginine N-methyltransferase 1 0 0 104.05 0.0092615 8049300 13921 14681 14426 5840 19387 11574 15195 16717 14143 14267 FALSE FALSE TRUE 12945.20979 13517.62409 20012.13354 13595.81514 16955.30168 10146.11756 11393.05028 12910.90403 15368.92663 10694.45034 1.210460508 1.263984933 1.871263404 1.271296299 1.585429933 0.948727353 1.065323595 1.207252699 1.437093646 1 13.38457471 -6.255500142 24.97565431 1.14048551 1.44521388 0.334195558 0.21770855 611.4789479 2571390.545 0.074185143 0.072326711 5.55E-07 6.255500142 0.30472837 ATMAQNENVVVQPVVAENIPVIPLS(ph)DSPPPSR ddPTM_HeLa_A485_30min_R1 1 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ATMAQNENVVVQPVVAENIPVIPLS(0.497)DS(0.416)PPPS(0.088)R 61.499 0.0080139 74955000 22908 30258 30361 23728 33279 35638 29647 35052 29318 30783 TRUE FALSE FALSE 28003.80557 33796.40989 41592.79733 25024.20056 29965.62591 37503.95057 23312.67626 26455.44204 35201.85368 23109.36462 1.2117947 1.462455176 1.799824357 1.08285974 1.296687573 1.622889733 1.008797803 1.144793138 1.523272243 1 14.49618997 -13.40278979 0.111017357 5.98E-06 1.559834141 0.164435992 0.238681439 251.9110707 2.118115086 59.05481636 3.082512201 3.96E-14 13.40278979 1.559828162 ATMAQNENVVVQPVVAENIPVIPLS(ph)DSPPPSR ddPTM_HeLa_A486_30min_R1 2 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ATMAQNENVVVQPVVAENIPVIPLS(0.486)DS(0.417)PPPS(0.097)R;ATMAQNENVVVQPVVAENIPVIPLS(0.487)DS(0.374)PPPS(0.138)R ; 82.988 0.0003805 233328000 150330 174763 156563 57699 203346 159971 181828 183539 145691 167354 TRUE FALSE FALSE 139792.6433 160914.1434 217188.3865 134326.1879 177840.4486 140235.4045 136332.7112 141751.1763 158319.6132 125447.4691 1.114352042 1.282721322 1.731309432 1.070776389 1.417648756 1.117881496 1.086771317 1.129964417 1.262039117 1 16.93672384 -6.276693668 23.67501135 1.125419013 1.32973505 0.244361804 0.179057711 614.8269062 954221.7842 0.062741638 0.055574024 5.29E-07 6.276693668 0.204316037 ATMAQNENVVVQPVVAENIPVIPLSDS(ph)PPPSR ddPTM_HeLa_A485_30min_R1 3 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ATMAQNENVVVQPVVAENIPVIPLS(0.154)DS(0.692)PPPS(0.154)R;ATMAQNENVVVQPVVAENIPVIPLS(0.126)DS(0.747)PPPS(0.126)R;ATMAQNENVVVQPVVAENIPVIPLS(0.143)DS(0.715)PPPS(0.143)R ;; 136.02 8.57E-07 394234000 395001 529929 522864 369423 602747 486160 537592 619634 473101 528467 TRUE FALSE FALSE 482867.6097 591899.5868 716293.1518 389603.6431 542735.3923 511614.5859 422731.0775 467667.79 568048.0312 396729.9026 1.217119271 1.491945989 1.805493226 0.982037503 1.368022397 1.289579088 1.065538732 1.178806505 1.431825601 1 18.59779762 -5.27112471 24.99114522 1.202057351 1.503562156 0.361639901 0.1922911 750.6436524 1936891.878 0.053715924 0.080786815 5.36E-06 5.27112471 0.301504804 ATMAQNENVVVQPVVAENIPVIPLSDS(ph)PPPSR ddPTM_HeLa_A486_30min_R1 2 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ATMAQNENVVVQPVVAENIPVIPLS(0.234)DS(0.685)PPPS(0.081)R;ATMAQNENVVVQPVVAENIPVIPLS(0.19)DS(0.62)PPPS(0.19)R ; 95.361 0.00014824 226364000 146982 153158 148633 60157 201964 136712 165920 168665 140247 167866 TRUE FALSE FALSE 136679.3208 141021.2023 206187.6781 140048.5362 176631.7919 119845.8634 124405.0611 130263.6614 152403.7229 125831.261 1.086211167 1.120716753 1.638604561 1.112986829 1.403719477 0.952433143 0.988665774 1.035224955 1.211175361 1 16.94113086 -6.267919774 24.97631457 1.036649275 1.275501362 0.333509709 0.166037104 631.0244067 2432046.642 0.058130595 0.052459155 5.40E-07 6.267919774 0.238852087 ATMS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ATMSPR 6 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AT(0.016)MS(0.984)PR 78.728 0.022427 925110000 480510 676370 491740 518050 543990 546490 662560 784560 614060 844620 TRUE FALSE FALSE 587397.7918 755465.5879 673655.089 546349.7597 489828.4455 575103.3714 520998.6434 592145.4299 737296.2095 634071.7781 0.926390059 1.191451211 1.062427177 0.861652858 0.772512612 0.907000424 0.821671397 0.933877599 1.16279613 1 19.27428664 -1.286096771 9.203619165 0.957498102 1.164164366 0 0.132524847 0 0 0.032824212 0 0.051749151 1.286096771 0.206666264 ATNES(ph)EDEIPQLVPIGK ddPTM_HeLa_A485_30min_R1 11 ATNESEDEIPQLVPIGK 17 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.289)NES(0.711)EDEIPQLVPIGK;AT(0.032)NES(0.968)EDEIPQLVPIGK;AT(0.029)NES(0.971)EDEIPQLVPIGK;AT(0.01)NES(0.99)EDEIPQLVPIGK;ATNES(1)EDEIPQLVPIGK;AT(0.026)NES(0.974)EDEIPQLVPIGK;AT(0.038)NES(0.962)EDEIPQLVPIGK;AT(0.007)NES(0.993)EDEIPQLVPIGK;AT(0.042)NES(0.958)EDEIPQLVPIGK;AT(0.002)NES(0.998)EDEIPQLVPIGK;AT(0.002)NES(0.998)EDEIPQLVPIGK ;;;;;;;;;; 308.73 5.69E-79 40640453000 3348400 3532161 3159793 4040333 4965308 3841090 5358631 5725412 3734869 5808332 TRUE FALSE FALSE 4093240.028 3945216.503 4328731.921 4261046.161 4470944.501 4042203.533 4213715.711 4321245.73 4484422.95 4360421.727 0.938725721 0.904778655 0.992732399 0.977209643 1.025346808 0.927021235 0.966355086 0.991015549 1.028437897 1 22.05603624 -4.76708073 24.99715861 0.986118012 0.921752182 0.465715532 0.028511196 110.6075234 490116.9548 0.007596826 0.016535382 1.71E-05 4.76708073 -0.06436583 ATNES(ph)EDEIPQLVPIGK ddPTM_HeLa_A486_30min_R1 8 ATNESEDEIPQLVPIGK 17 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.034)NES(0.966)EDEIPQLVPIGK;AT(0.203)NES(0.797)EDEIPQLVPIGK;AT(0.032)NES(0.968)EDEIPQLVPIGK;AT(0.015)NES(0.985)EDEIPQLVPIGK;AT(0.035)NES(0.965)EDEIPQLVPIGK;AT(0.006)NES(0.994)EDEIPQLVPIGK;ATNES(1)EDEIPQLVPIGK;AT(0.028)NES(0.972)EDEIPQLVPIGK ;;;;;;; 256.45 1.95E-51 21452609000 2386611 2765686 1879623 1075009 3021792 2703534 3135065 3029400 2268365 3096641 TRUE FALSE FALSE 2219321.893 2546522.969 2607463.364 2502675.28 2642770.67 2369999.463 2350638.578 2339671.751 2464988.705 2321221.938 0.956100689 1.097061391 1.123314975 1.078171475 1.13852563 1.021013727 1.012672911 1.007948319 1.061935813 1 21.14645304 -6.358091374 14.5419083 1.020677536 1.08211296 0.26282881 0.048326021 2.21715441 329.5370533 0.017080967 0.015063147 4.38E-07 6.358091374 0.061435424 ATNES(ph)EDEIPQLVPIGKK ddPTM_HeLa_A485_30min_R1 3 ATNESEDEIPQLVPIGKK 18 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.083)NES(0.917)EDEIPQLVPIGKK;ATNES(1)EDEIPQLVPIGKK;ATNES(1)EDEIPQLVPIGKK ;; 224.49 9.13E-35 4635600000 1689840 3288140 1507380 1064260 3184630 4165420 5395120 9888530 1941780 1902070 TRUE FALSE FALSE 2065739.078 3672659.37 2065022.589 1122397.829 2867557.055 4383514.95 4242408.538 7463352.513 2331477.435 1427918.954 1.446678099 2.572036291 1.446176328 0.786037489 2.008207152 3.06986257 2.971042948 5.226733977 1.632779948 1 20.44548267 -6.171883516 3.898555887 3.060285293 1.606430213 0.18663479 1.125771735 0.324048602 9.102419641 0.376526966 0.373778882 6.73E-07 6.171883516 -1.453855081 ATNES(ph)EDEIPQLVPIGKK ddPTM_HeLa_A486_30min_R1 3 ATNESEDEIPQLVPIGKK 18 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.124)NES(0.876)EDEIPQLVPIGKK;ATNES(1)EDEIPQLVPIGKK;AT(0.002)NES(0.998)EDEIPQLVPIGKK ;; 231.89 1.98E-35 1911940000 4217600 2672170 1653540 1559040 4203750 2322200 4184460 4420580 1688180 4736330 TRUE FALSE FALSE 3921968.02 2460417.517 2293834.971 3629523.91 3676476.477 2035710.574 3137463.849 3414110.435 1834512.802 3550322.14 1.104679481 0.693012471 0.646092067 1.022308333 1.035533209 0.573387567 0.883712442 0.961633987 0.516717281 1 21.7595185 -6.231487312 24.99904724 0.790731099 0.881460486 0.072186809 0.197048933 2640.752167 2204065.917 0.065564951 0.06555769 5.87E-07 6.231487312 0.090729387 ATNS(ph)PKPHMVPR ddPTM_HeLa_A485_30min_R1 4 ATNSPKPHMVPR 12 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 AT(0.027)NS(0.973)PKPHMVPR;AT(0.058)NS(0.942)PKPHMVPR;AT(0.111)NS(0.889)PKPHMVPR;AT(0.009)NS(0.991)PKPHMVPR ;;; 118.2 9.13E-05 2387150000 1073560 960700 748170 1272240 1384140 1158960 1624640 1662880 962060 1759230 TRUE FALSE FALSE 1312369.718 1073045.508 1024949.217 1341739.25 1246330.162 1219641.354 1277522.392 1255056.073 1155136.617 1320686.337 0.993702805 0.812490807 0.776073158 1.015940888 0.943698838 0.923490551 0.967317035 0.950305941 0.874648722 1 20.33285644 -5.266765355 24.99209739 0.950459093 0.855929113 0.305847464 0.063868658 523.7346866 2457622.027 0.01777433 0.027268057 5.41E-06 5.266765355 -0.094529981 ATNS(ph)PKPHMVPR ddPTM_HeLa_A486_30min_R1 3 ATNSPKPHMVPR 12 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 AT(0.024)NS(0.976)PKPHMVPR;AT(0.006)NS(0.994)PKPHMVPR;ATNS(1)PKPHMVPR ;; 156.96 1.92E-08 2684210000 1398320 1393870 928630 655790 1455090 1459340 1781780 1658730 1107130 1959380 TRUE FALSE FALSE 1300304.989 1283414.665 1288220.406 1526712.262 1272579.044 1279301.468 1335959.798 1281073.389 1203096.92 1468738.495 0.88532097 0.873821085 0.877093104 1.03947181 0.866443583 0.871020589 0.909596775 0.872227012 0.819136234 1 20.48614612 ATPAQT(ph)PR ddPTM_HeLa_A486_30min_R1 1 ATPAQTPR 8 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 AT(0.001)PAQT(0.999)PR 79.07 0.013884 0 239740 223300 292760 56281 281710 264980 210920 211110 282210 213450 TRUE FALSE FALSE 222935.464 205604.8948 406124.5124 131025.0123 246375.305 232289.4617 158145.5851 163044.8615 306672.19 160000.7307 1.393340287 1.285024724 2.538266611 0.818902587 1.539838624 1.451802506 0.988405393 1.019025731 1.916692435 1 17.28771897 -5.319286683 24.99997286 1.258461732 1.693511909 0.207226047 0.437112618 455.5313664 196866.7462 0.121050987 0.179547702 4.79E-06 5.319286683 0.435050176 ATPATAPGTS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ATPATAPGTSPR 12 0 Q96P47;Q96P47-2;Q96P47-4;H0Y873;Q96P47-5 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 ATPAT(0.102)APGT(0.127)S(0.771)PR;ATPATAPGT(0.166)S(0.834)PR ; 95.183 0.0016114 631540000 504880 667230 701620 488540 748300 559070 659550 722240 568060 601160 TRUE FALSE FALSE 617188.8142 745256.7444 961178.4348 515227.7032 673796.6246 588342.0407 518631.7545 545109.5076 682064.4314 451301.8755 1.367574228 1.651348653 2.129790473 1.1416476 1.49300648 1.303655209 1.149190337 1.207860054 1.511326384 1 18.78373325 -5.289003297 24.99887186 1.273907077 1.709749027 0.460292611 0.226852542 650.7506781 590191.6227 0.063624997 0.094395197 5.14E-06 5.289003297 0.43584195 ATPATAPGTS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ATPATAPGTSPR 12 0 Q96P47;Q96P47-2;Q96P47-4;H0Y873;Q96P47-5 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 ATPATAPGT(0.005)S(0.995)PR;ATPATAPGT(0.001)S(0.999)PR ; 140.31 3.16E-06 991450000 995790 1123710 1025440 300710 1287600 933810 1016170 1019030 908990 961710 TRUE FALSE FALSE 925990.2633 1034663.127 1422517.83 700068.077 1126097.202 818606.0165 761913.518 787019.1143 987781.9851 720891.5563 1.284507018 1.435254884 1.973275755 0.971114269 1.562089598 1.135546684 1.056904484 1.091730243 1.370222714 1 19.45942273 -5.960710742 1.20925229 1.131317535 1.501278723 0.25668418 0.254550385 0.638274346 1.961791027 0.111555671 0.132675114 1.09E-06 5.960710742 0.369961187 ATPELGSSENSASS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 ATPELGSSENSASSPPR 17 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 ATPELGSSENSAS(0.002)S(0.998)PPR 266.24 6.35E-52 552120000 235710 297450 305820 221960 341540 276300 311990 265320 261170 332780 TRUE FALSE FALSE 288142.8763 332234.19 418955.5442 234085.1128 307535.0784 290766.6408 245330.7878 200249.854 313584.4234 249824.0704 1.153383162 1.329872616 1.677002315 0.936999835 1.231006596 1.163885611 0.982014213 0.801563491 1.255221016 1 17.93055296 -5.282804244 24.98967768 1.053772586 1.381064749 0.428884416 0.17647747 757.2249842 885695.8545 0.050611056 0.075144253 5.21E-06 5.282804244 0.327292163 ATPELGSSENSASS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 ATPELGSSENSASSPPR 17 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 ATPELGSSENSAS(0.003)S(0.997)PPR;ATPELGSSENSAS(0.007)S(0.993)PPR;ATPELGSSENSAS(0.033)S(0.967)PPR ;; 251 2.83E-43 1126430000 913690 1041770 913800 279068 1197250 943430 928510 988160 905200 849030 TRUE FALSE FALSE 849645.0493 959216.3511 1267647.832 649684.4073 1047079.741 827039.1987 696186.9772 763177.5394 983663.4648 636427.3617 1.335022817 1.507189051 1.991818562 1.020830414 1.645246267 1.299502894 1.093898564 1.199158907 1.545602097 1 19.27963634 -6.103390515 1.130484368 1.223149778 1.541191143 0.192512587 0.266890551 0.83067127 2.227902144 0.129851598 0.135923067 7.88E-07 6.103390515 0.318041366 ATPGAPALTSMT(ph)PTAVER ddPTM_HeLa_A485_30min_R1 1 ATPGAPALTSMTPTAVER 18 0 P54198;P54198-2 P54198 HIRA Protein HIRA 1 0 ATPGAPALT(0.001)S(0.003)MT(0.993)PT(0.003)AVER 169.72 1.39E-11 132830000 185040 224800 202950 232790 385540 148230 185790 164870 121380 189890 TRUE FALSE FALSE 226201.5096 251088.4045 278029.6505 245506.7282 347154.2839 155991.0936 146094.4487 124435.374 145739.8526 142553.9177 1.586778626 1.761357447 1.950347314 1.722202604 2.435248989 1.094260306 1.024836435 0.872900416 1.022348982 1 17.12114816 -6.397330118 6.923221673 0.982421309 1.876099197 0.812756521 0.213591237 0.106239783 5.534881163 0.075346507 0.06623046 4.01E-07 6.397330118 0.893677888 ATPGAPALTSMT(ph)PTAVER ddPTM_HeLa_A486_30min_R1 1 ATPGAPALTSMTPTAVER 18 0 P54198;P54198-2 P54198 HIRA Protein HIRA 1 0 ATPGAPALT(0.057)S(0.043)MT(0.875)PT(0.025)AVER 84.653 0.0067795 170430000 265970 250280 235120 113260 307340 175710 287590 207790 159150 180890 TRUE FALSE FALSE 247326.8765 230446.9013 326164.7607 263675.0038 268790.5514 154032.6867 215631.9402 160480.753 172945.2501 135593.9666 1.824025675 1.699536543 2.405451872 1.944592451 1.982319406 1.135984812 1.590276806 1.18353904 1.2754642 1 17.04893346 -6.254841254 24.6434851 1.270600644 1.978742194 0.733938765 0.2205211 238.3599262 890256.3628 0.074220929 0.072529839 5.56E-07 6.254841254 0.70814155 ATPKLDS(ph)SPSVSSTLAAK ddPTM_HeLa_A485_30min_R1 1 ATPKLDSSPSVSSTLAAK 18 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ATPKLDS(0.588)S(0.412)PSVSSTLAAK 98.269 0.00020095 299580000 177350 331720 143660 119560 281840 404850 506090 835150 151870 154770 TRUE FALSE FALSE 216800.8956 370511.7684 196805.8122 126091.2601 253779.02 426047.32 397959.7371 630328.153 182348.916 116188.6873 1.865938076 3.18887989 1.693846593 1.085228373 2.184197324 3.666857159 3.425116044 5.425038939 1.569420571 1 16.82611008 -6.182922048 5.82645048 3.31696851 1.987414206 0.122096316 1.240051941 0.369263261 21.32436997 0.402105817 0.401411059 6.56E-07 6.182922048 -1.329554304 ATPKLDSS(ph)PSVSSTLAAK ddPTM_HeLa_A485_30min_R1 1 ATPKLDSSPSVSSTLAAK 18 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ATPKLDS(0.126)S(0.871)PS(0.004)VSSTLAAK 192.27 1.44E-18 317500000 268390 455100 223660 141650 396700 621490 785930 1235600 257510 279670 TRUE FALSE FALSE 328092.4296 508319.9862 306401.1413 149387.9808 357203.1551 654030.2554 618009.635 932567.1627 309189.895 209953.4159 1.562691553 2.421108434 1.459376786 0.711529175 1.701344813 3.115120811 2.94355599 4.441781328 1.472659512 1 17.67970974 -6.207918954 6.484190431 2.83073416 1.557176422 0.200139853 0.96803193 0.303876496 29.32841817 0.314667521 0.312906298 6.20E-07 6.207918954 -1.273557737 ATQCLVKS(ph)PEVK ddPTM_HeLa_A485_30min_R1 3 ATQCLVKSPEVK 12 1 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 AT(0.011)QCLVKS(0.989)PEVK;ATQCLVKS(1)PEVK;ATQCLVKS(1)PEVK ;; 115.8 0.00012579 494490000 344953 284576 222366 592835 483096 413023 719110 762330 302056 835220 TRUE FALSE FALSE 421686.6048 317854.6877 304628.4368 625220.0749 434997.266 434648.2456 565466.2739 575367.3722 362675.8686 627015.0251 0.672530303 0.506933128 0.485839134 0.997137309 0.693758919 0.693202281 0.901838475 0.917629322 0.578416552 1 19.25814049 -3.12142507 0.168373008 0.975753826 7.77E-18 0.291234356 0.156406085 38.71020698 0.787593789 0.487276515 8.415962076 0.000756093 3.12142507 -0.975753826 ATQVGEKT(ph)PK ddPTM_HeLa_A485_30min_R1 1 ATQVGEKTPK 10 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 AT(0.001)QVGEKT(0.999)PK 61.212 0.011853 0 228230 149160 96710 385620 206040 203560 322640 273640 158630 544800 TRUE FALSE FALSE 278998.9761 166602.9645 132487.0534 406685.4442 185525.9341 214218.0868 253705.3283 206529.3609 190465.586 408991.3863 0.682163452 0.40735079 0.323936048 0.994361881 0.453618194 0.523771634 0.62031949 0.504972398 0.465695837 1 18.64171093 -9.930950937 4.065350604 1.000019532 0.551673519 0.366921504 0.176174006 47881109.13 103217634 14185.72577 0.044787388 1.17E-10 9.930950937 -0.448346014 ATRPASTSQPDPS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 ATRPASTSQPDPSPDR 16 1 P20749;H7C0A2 P20749 BCL3 B-cell lymphoma 3 protein 1 0 AT(0.005)RPAS(0.013)T(0.002)S(0.007)QPDPS(0.973)PDR 96.435 0.0095086 313100000 130510 153870 174630 150090 237540 155180 197660 172920 178670 234210 TRUE FALSE FALSE 159541.4992 171863.758 239232.904 158289.0367 213889.6835 163304.9848 155428.3263 130511.0989 214527.4301 175825.7573 0.907384115 0.977466332 1.360624903 0.900260798 1.216486633 0.928788747 0.883990654 0.742275198 1.220113784 1 17.42378691 -6.346885555 24.99990735 0.934485052 1.073615694 0.098774664 0.171790207 171.3766918 50138.21229 0.059125928 0.052144159 4.50E-07 6.346885555 0.139130642 ATS(ph)FEESER ddPTM_HeLa_A485_30min_R1 1 ATSFEESER 9 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 AT(0.059)S(0.941)FEESER 169.76 6.67E-06 905540000 432030 611920 616540 408140 828290 638330 815250 897700 840210 887420 TRUE FALSE FALSE 528133.583 683478.721 844623.8024 430435.6547 745822.5393 671751.9718 641065.1775 677537.6675 1008832.44 666202.5258 0.792752298 1.025932347 1.267818373 0.646103307 1.119513227 1.008329968 0.962267708 1.017014558 1.514302935 1 19.3456013 -7.557994239 24.20159273 1.259988278 0.982683219 0.243857369 0.196112005 172.4217844 118829.1522 0.124535324 0.047070438 2.77E-08 7.557994239 -0.277305059 ATS(ph)FEESER ddPTM_HeLa_A486_30min_R1 2 ATSFEESER 9 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 AT(0.002)S(0.998)FEESER;AT(0.017)S(0.983)FEESER ; 147.73 8.57E-05 2222200000 1431330 1726850 1462180 565040 1907960 2120000 2287660 2533600 1631930 1821640 TRUE FALSE FALSE 1331001.158 1590008.117 2028375.255 1315441.676 1668645.866 1858455.955 1715263.272 1956754.588 1773387.006 1365489.487 0.974742882 1.164423551 1.485456515 0.96334808 1.222012972 1.361018135 1.256152675 1.433005971 1.298718901 1 20.38098678 -6.00366133 24.89894075 1.295493168 1.162447154 0.091347533 0.170672163 330.676778 2248796.578 0.052690976 0.058495175 9.92E-07 6.00366133 -0.133046015 ATS(ph)FSSAGEVPKPRPPSTR ddPTM_HeLa_A485_30min_R1 2 ATSFSSAGEVPKPRPPSTR 19 2 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-3 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 AT(0.02)S(0.743)FS(0.118)S(0.118)AGEVPKPRPPSTR;AT(0.139)S(0.86)FS(0.001)SAGEVPKPRPPSTR ; 164.65 9.44E-13 783390000 249720 220307 205183 304120 339640 279640 355290 402420 295750 436600 TRUE FALSE FALSE 305269.3525 246069.9872 281088.7301 320733.3055 305824.2491 294281.518 279379.389 303725.864 355104.3122 327763.655 0.931370357 0.750754342 0.857595788 0.978550552 0.933063335 0.897846706 0.852380625 0.926661207 1.083415769 1 18.32229636 -7.620987155 4.985197553 1.0391998 0.885707262 0.504519117 0.060742133 0.179702182 7.176680295 0.046860754 0.016560548 2.39E-08 7.620987155 -0.153492539 ATS(ph)FSSAGEVPKPRPPSTR ddPTM_HeLa_A486_30min_R1 2 ATSFSSAGEVPKPRPPSTR 19 2 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-3 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 AT(0.13)S(0.835)FS(0.036)SAGEVPKPRPPSTR;AT(0.139)S(0.859)FS(0.002)SAGEVPKPRPPSTR ; 138.46 4.70E-07 1255870000 469520 533020 376326 187682 517240 480410 622410 623420 419560 499750 TRUE FALSE FALSE 436609.0726 490781.554 522049.5056 436933.1809 452362.9361 421141.8987 466676.4348 481480.8752 455927.7986 374609.3472 1.165505014 1.310115612 1.393583768 1.166370205 1.207559127 1.124216205 1.245768261 1.285287937 1.21707534 1 18.51502737 -12.91384913 0.318763093 1.81E-17 1.248753935 0.467977546 0.075113211 142.8489149 2.464731842 94.57675732 0.073353684 1.22E-13 12.91384913 1.248753935 ATS(ph)NVFAMFDQSQIQEFK ddPTM_HeLa_A486_30min_R1 2 ATSNVFAMFDQSQIQEFK 18 0 J3QRS3;P19105;O14950;J3KTJ1;P24844;P24844-2 J3QRS3 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 1 0 AT(0.162)S(0.838)NVFAMFDQSQIQEFK;AT(0.133)S(0.867)NVFAMFDQSQIQEFK ; 273.01 2.98E-69 1329930000 399360 651380 471000 341020 698750 815190 1012030 1013400 584780 719560 TRUE FALSE FALSE 371366.9263 599762.2765 653383.8138 793911.7942 611106.2594 714620.146 758809.3898 782670.9424 635469.2012 539377.4925 0.688510239 1.111952732 1.211366479 1.471903825 1.132984353 1.324897972 1.406824349 1.451063408 1.178152982 1 19.0409358 -4.207782647 1.616085797 1.301086857 0.408471228 0.603894577 0.142098392 0.729473798 1.655213864 0.037922403 1.063595835 6.20E-05 4.207782647 -0.892615629 ATS(ph)PEAGGGGGALK ddPTM_HeLa_A485_30min_R1 1 ATSPEAGGGGGALK 14 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 ATS(1)PEAGGGGGALK 193.62 5.20E-18 251660000 419550 437580 364490 504180 573850 492700 652310 682520 454340 671040 TRUE FALSE FALSE 512877.4501 488751.1746 499330.0187 531722.0767 516715.4791 518497.0101 512938.6396 515130.8999 545521.8705 503762.0776 1.018094598 0.970202396 0.991202079 1.05550239 1.025713332 1.029249785 1.018216064 1.022567841 1.082895865 1 18.942383 -5.239624657 23.64311265 1.033257617 0.990869943 0.375245653 0.023762982 401.4039449 435045.2674 0.006215323 0.010749122 5.76E-06 5.239624657 -0.042387674 ATS(ph)PEAGGGGGALK ddPTM_HeLa_A486_30min_R1 1 ATSPEAGGGGGALK 14 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 AT(0.003)S(0.997)PEAGGGGGALK 241.15 2.54E-35 232060000 565850 591120 397770 216510 655480 630560 680770 695630 433730 685570 TRUE FALSE FALSE 526186.8371 544277.4984 551797.1967 504046.2218 573263.5863 552767.9183 510434.1455 537250.2345 471326.0656 513898.8097 1.023911375 1.059114145 1.073746789 0.980827767 1.115518416 1.075635724 0.993258081 1.045439733 0.917157341 1 18.97112478 -7.397578822 1.692057729 0.966944635 1.052276444 0.343634585 0.044234163 0.426925976 2.178856775 0.035858579 0.012641369 4.00E-08 7.397578822 0.085331809 ATS(ph)PESTSR ddPTM_HeLa_A485_30min_R1 2 ATSPESTSR 9 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 AT(0.001)S(0.999)PESTSR;AT(0.004)S(0.927)PES(0.069)TSR ; 210.08 3.28E-10 5550300000 6781600 9558490 4544880 9554320 4636250 8302110 7264490 10851390 8445650 10925570 TRUE FALSE FALSE 8290143.524 10676272.26 6226220.24 10076248.31 4174648.671 8736795.642 5712372.366 8190069.588 10140614.49 8202026.469 1.010743327 1.301662741 0.759107553 1.228507168 0.508977713 1.06519964 0.69645866 0.998542204 1.236354762 1 22.96754897 -4.757900804 24.99999424 0.927754592 1.156202994 0.129452139 0.226812372 167.0385073 1180074.68 0.055510099 0.135217096 1.75E-05 4.757900804 0.228448403 ATS(ph)PESTSR ddPTM_HeLa_A486_30min_R1 3 ATSPESTSR 9 0 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 AT(0.003)S(0.997)PESTSR;AT(0.033)S(0.951)PES(0.016)TSR;AT(0.02)S(0.98)PESTSR ;; 169.99 6.49E-06 3324487000 2425990 1522053 2275890 1004402 1787820 3724740 2228030 2043700 3256690 3046290 TRUE FALSE FALSE 2255940.629 1401439.977 3157175.558 2338298.616 1563574.945 3265219.449 1670553.328 1578394.124 3538982.511 2283479.156 0.987940101 0.613730138 1.382616325 1.024006989 0.684733618 1.429931795 0.731582473 0.691223355 1.54982037 1 21.12280219 -4.733307335 24.99307184 1.037258305 0.800835444 0.099223314 0.307443801 545.1040622 484273.4889 0.075654579 0.20007757 1.85E-05 4.733307335 -0.236422862 ATS(ph)PLVSLYPALECR ddPTM_HeLa_A485_30min_R1 7 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 AT(0.018)S(0.982)PLVSLYPALECR;AT(0.018)S(0.982)PLVSLYPALECR;AT(0.173)S(0.827)PLVSLYPALECR;AT(0.022)S(0.978)PLVSLYPALECR;AT(0.003)S(0.997)PLVSLYPALECR;AT(0.001)S(0.999)PLVSLYPALECR;AT(0.02)S(0.98)PLVSLYPALECR ;;;;;; 285.9 8.18E-59 6088106000 1088336 1360557 1550602 1258648 1855242 1310384 1563904 1624118 1354324 1546687 TRUE FALSE FALSE 1330432.588 1519662.306 2124234.206 1327404.753 1670527.592 1378993.68 1229763.134 1225800.514 1626124.404 1161126.396 1.145812027 1.308782844 1.829459923 1.143204356 1.438712959 1.187634426 1.059112203 1.055699464 1.400471482 1 20.1470936 -6.378540969 4.56761133 1.132358406 1.381750674 0.244586161 0.205649744 0.343983785 11.40220251 0.074813484 0.065374934 4.18E-07 6.378540969 0.249392268 ATS(ph)PLVSLYPALECR ddPTM_HeLa_A486_30min_R1 8 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 ATS(1)PLVSLYPALECR;AT(0.016)S(0.984)PLVSLYPALECR;AT(0.051)S(0.949)PLVSLYPALECR;AT(0.028)S(0.972)PLVSLYPALECR;AT(0.025)S(0.975)PLVSLYPALECR;AT(0.008)S(0.992)PLVSLYPALECR;AT(0.001)S(0.999)PLVSLYPALECR;AT(0.016)S(0.984)PLVSLYPALECR ;;;;;;; 305.14 7.10E-68 7922109000 989825 1317525 1121476 436984.8 1513844 1149159 1313932 1371496 1060330 1220946 TRUE FALSE FALSE 920443.379 1213119.521 1555741.541 1017322.698 1323963.569 1007387.446 985172.3162 1059236.3 1152240.258 915213.1746 1.005714739 1.325504871 1.699867948 1.111569115 1.446617691 1.100713445 1.076440269 1.157365661 1.258985655 1 19.80374829 -6.279331377 24.26579365 1.125895041 1.328042504 0.224050847 0.184583199 901.7925318 1223040.132 0.065224882 0.057652571 5.26E-07 6.279331377 0.202147463 ATS(ph)PSSSVS(ph)GDFDDGHHSVSTPGPSR ddPTM_HeLa_A486_30min_R1 1 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 2 0 AT(0.444)S(0.553)PS(0.011)S(0.067)S(0.206)VS(0.719)GDFDDGHHSVSTPGPSR 128.01 7.40E-13 0 57799 85803 96526 6557.9 111240 60224 54346 71042 74683 29102 TRUE FALSE FALSE 53747.58857 79003.65779 133903.4523 15267.12262 97287.24193 52794.17519 40748.05599 54867.28744 81156.58257 21814.66978 2.463827742 3.621583943 6.138229623 0.699855775 4.459716462 2.420122593 1.867919909 2.515155535 3.720275548 1 14.41301101 -5.848968899 1.075429507 2.405151143 3.732430505 0.117178058 1.461531124 1.164024184 2.88004704 0.657664987 0.903356384 1.42E-06 5.848968899 1.327279363 ATS(ph)PSSSVSGDFDDGHHSVSTPGPSR ddPTM_HeLa_A485_30min_R1 1 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AT(0.306)S(0.562)PS(0.131)S(0.001)SVSGDFDDGHHSVSTPGPSR 109.26 0.00030359 775990000 6307.4 14813 12266 6107.5 25139 12510 11635 13150 12217 8325.3 TRUE FALSE FALSE 7710.45937 16545.25149 16803.70383 6441.13726 22636.07289 13165.00426 9149.087201 9924.941882 14668.83984 6249.955926 1.233682199 2.647258907 2.688611573 1.030589229 3.621797203 2.106415535 1.463864275 1.588001899 2.347030925 1 12.6096303 -8.926449861 0.428077125 0.862448922 2.216428395 0.154659365 0.7487441 7.237856342 1.84268307 2.686224966 0.475485021 1.18E-09 8.926449861 1.353979473 ATS(ph)PSSSVSGDFDDGHHSVSTPGPSR ddPTM_HeLa_A486_30min_R1 1 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AT(0.158)S(0.788)PS(0.033)S(0.007)S(0.007)VS(0.007)GDFDDGHHSVSTPGPSR 136.2 2.23E-06 311350000 32481 35036 41758 8343.2 53656 21623 27475 35180 38572 13150 TRUE FALSE FALSE 30204.24963 32259.61976 57927.81592 19423.39124 46925.96416 18955.37411 20600.4644 27170.28197 41915.45202 9857.154408 3.064195647 3.272711213 5.876728062 1.970486658 4.760599481 1.923006714 2.089899736 2.756402188 4.252287251 1 13.26695551 -6.273108263 24.95124333 2.494443103 3.775227202 0.237143196 1.236310476 1206.072638 2578903.454 0.423801186 0.376791196 5.33E-07 6.273108263 1.280784099 ATS(ph)SSSGSLSATGR ddPTM_HeLa_A485_30min_R1 1 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AT(0.019)S(0.475)S(0.369)S(0.082)S(0.024)GS(0.024)LS(0.007)AT(0.001)GR 65.895 0.010418 0 502600 652840 552720 876340 454050 767320 696630 814960 638290 1026000 TRUE FALSE FALSE 614401.6361 729183.959 757194.1286 924212.2352 408843.1877 807495.6887 547789.3096 615089.7822 766388.9483 770237.0821 0.797678598 0.946700667 0.983066313 1.19990618 0.530801746 1.048372907 0.711195711 0.79857202 0.995003962 1 19.55494306 -5.734976468 24.99986022 0.840498522 0.979415627 0.129587362 0.170188692 460.2000533 434754.9528 0.0484495 0.062529445 1.84E-06 5.734976468 0.138917104 ATSACAPISS(ph)PK ddPTM_HeLa_A486_30min_R1 2 ATSACAPISSPK 12 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 ATSACAPIS(0.022)S(0.978)PK;ATSACAPIS(0.026)S(0.974)PK ; 113.99 0.00031299 292710000 450830 435980 268540 283770 425790 477780 635770 608610 362460 769040 TRUE FALSE FALSE 419229.1451 401431.357 372525.8798 660630.9009 372383.4479 418836.3613 476693.6215 470042.7889 393878.3246 576467.3784 0.727238281 0.696364395 0.646221961 1.14599876 0.645974884 0.726556917 0.826922111 0.815384888 0.683262123 1 19.13687944 -11.23436528 2.15079 1.728078041 0.771917553 0.19899407 0.139332159 8844886.131 1630569.041 31255177.04 0.03469652 5.83E-12 11.23436528 -0.956160488 ATSAGS(ph)SPSCSLAGR ddPTM_HeLa_A485_30min_R1 1 ATSAGSSPSCSLAGR 15 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 ATSAGS(0.608)S(0.383)PS(0.008)CS(0.002)LAGR 58.487 0.032642 169560000 107980 166150 156830 122120 165030 137090 171590 173130 129470 163280 TRUE FALSE FALSE 131999.7785 185579.7972 214847.9432 128791.1064 148599.0337 144267.8204 134928.3947 130669.596 155453.4414 122577.3009 1.076869677 1.513981755 1.752754724 1.050692954 1.212288349 1.176953802 1.100761672 1.066017893 1.268207411 1 16.90333232 -5.289751146 24.9994514 1.132532814 1.454480126 0.428287144 0.170744264 654.6681867 578074.3255 0.048100697 0.071359239 5.13E-06 5.289751146 0.321947312 ATSAGS(ph)SPSCSLAGR ddPTM_HeLa_A486_30min_R1 1 ATSAGSSPSCSLAGR 15 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 ATSAGS(0.688)S(0.3)PS(0.011)CS(0.001)LAGR 148.41 6.41E-08 1145900000 1185500 1261400 1022400 284590 1132000 866980 1026200 981070 843900 898560 TRUE FALSE FALSE 1102402.572 1161442.07 1418300.661 662539.9024 990014.0045 760020.8224 769433.906 757701.7776 917049.9315 673554.7274 1.636693393 1.724346995 2.105694761 0.983646726 1.469834542 1.128372783 1.142348015 1.124929789 1.361507676 1 19.36143565 -5.266448251 24.99996553 1.187391816 1.81245525 0.733653747 0.179102362 205.9876715 1028113.704 0.048666274 0.074792441 5.41E-06 5.266448251 0.625063434 ATSAGSS(ph)PSCSLAGR ddPTM_HeLa_A485_30min_R1 4 ATSAGSSPSCSLAGR 15 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 ATSAGS(0.002)S(0.99)PS(0.008)CSLAGR;ATSAGSS(0.942)PS(0.058)CSLAGR;ATSAGS(0.03)S(0.968)PS(0.003)CSLAGR;ATSAGS(0.02)S(0.968)PS(0.012)CSLAGR ;;; 339.12 1.04E-90 5348000000 4581270 5622870 5548410 3826460 5704500 4507360 5259280 5876020 4459110 5003040 TRUE FALSE FALSE 5600357.706 6280415.734 7600997.748 4035489.821 5136539.95 4743358.4 4135591.864 4434916.882 5354012.476 3755874.202 1.491092993 1.67215817 2.023762602 1.074447546 1.367601702 1.262917272 1.101099675 1.180794841 1.425503674 1 21.84071731 -5.272775484 24.9966842 1.214562808 1.723319956 0.662501014 0.172264782 428.9601937 945878.0497 0.04801503 0.071949827 5.34E-06 5.272775484 0.508757148 ATSAGSS(ph)PSCSLAGR ddPTM_HeLa_A486_30min_R1 3 ATSAGSSPSCSLAGR 15 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 ATSAGS(0.002)S(0.985)PS(0.013)CSLAGR;ATSAGS(0.021)S(0.978)PS(0.002)CSLAGR;ATSAGS(0.002)S(0.996)PS(0.002)CSLAGR ;; 334.79 1.81E-90 3835700000 2934580 3121360 2606130 808070 2936990 2141630 2404520 2526640 1936960 2239770 TRUE FALSE FALSE 2728881.096 2874012.066 3615293.331 1881227.798 2568605.328 1877417.465 1802883.664 1951379.228 2104857.252 1678917.014 1.625381763 1.71182497 2.153348439 1.120500765 1.529917981 1.118231247 1.073837271 1.162284504 1.2536994 1 20.67909949 -5.276951559 24.97925804 1.194153493 1.818349054 0.721921027 0.18478855 413.0859306 665191.1764 0.052579345 0.078302119 5.29E-06 5.276951559 0.624195561 ATSCFPRPMT(ph)PR ddPTM_HeLa_A486_30min_R1 1 ATSCFPRPMTPR 12 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 ATSCFPRPMT(1)PR 59.68 0.036598 741130000 712150 995390 1028500 231620 1164900 861400 857840 918540 886470 759280 TRUE FALSE FALSE 662231.9625 916511.6713 1426762.744 539223.0654 1018787.38 755129.2261 643199.3587 709408.4936 963309.9334 569151.3459 1.163542821 1.610312754 2.506824862 0.947415954 1.790011369 1.32676349 1.1301025 1.246432076 1.69253739 1 19.11845281 -6.050039834 1.316895832 1.284496345 1.663350583 0.113082508 0.422470764 0.969631032 3.46775759 0.185890071 0.201146323 8.91E-07 6.050039834 0.378854238 ATSS(ph)SSGSLSATGR ddPTM_HeLa_A485_30min_R1 2 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATSS(0.5)S(0.5)SGSLSATGR;ATS(0.012)S(0.706)S(0.275)S(0.003)GS(0.003)LSATGR ; 317.41 6.81E-69 783090000 520653 733293 753156 628790 909520 766517 870970 939860 731718 872940 TRUE FALSE FALSE 636470.4636 819045.2375 1031779.746 663139.2055 818964.9953 806650.6449 684880.1443 709357.8614 878567.0909 655332.1233 0.971218167 1.249817014 1.574437921 1.011913169 1.249694569 1.230903562 1.04508862 1.082440241 1.340644018 1 19.32186673 -6.72897107 24.355645 1.123913203 1.224991707 0.06772396 0.174194624 432.137455 324160.7368 0.066963192 0.051864611 1.87E-07 6.72897107 0.101078504 ATSS(ph)SSGSLSATGR ddPTM_HeLa_A486_30min_R1 4 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATS(0.001)S(0.927)S(0.067)S(0.005)GSLSATGR;ATSS(0.5)S(0.5)SGSLSATGR;ATS(0.011)S(0.901)S(0.088)SGSLSATGR;ATS(0.037)S(0.948)S(0.014)SGS(0.001)LSATGR ;;; 293.75 6.51E-58 1353690000 2392470 2769020 2432770 1035400 3304720 2697000 3191810 3152320 2390550 2984600 TRUE FALSE FALSE 2224770.208 2549592.771 3374803.696 2410463.526 2890211.202 2364271.561 2393185.378 2434605.551 2597764.799 2237236.734 0.994427713 1.139616891 1.508469643 1.077428906 1.291866506 1.056782023 1.06970592 1.088219907 1.161148823 1 21.09328649 -6.27922204 24.3873432 1.080343481 1.20894136 0.183477391 0.133576274 1098.195005 1506071.179 0.047510931 0.04199707 5.26E-07 6.27922204 0.128597879 ATSS(ph)TQSLAR ddPTM_HeLa_A485_30min_R1 1 ATSSTQSLAR 10 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 ATS(0.002)S(0.992)T(0.006)QSLAR 176.97 5.07E-08 395420000 273350 395080 419630 252520 465250 358150 422820 495700 358850 322020 TRUE FALSE FALSE 334155.7645 441281.1693 574868.5993 266314.5282 418928.0764 376902.1802 332481.0529 374128.7978 430867.9034 241746.3403 1.3822578 1.825389243 2.377982634 1.101627962 1.732924171 1.559081224 1.375330242 1.547608941 1.782314069 1 17.88313452 -5.275118065 24.98724482 1.479650211 1.858227887 0.255306877 0.32377457 1138.40756 2079559.451 0.089547948 0.133632151 5.31E-06 5.275118065 0.378577676 ATSS(ph)TQSLAR ddPTM_HeLa_A486_30min_R1 2 ATSSTQSLAR 10 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 AT(0.001)S(0.03)S(0.964)T(0.005)QSLAR;AT(0.001)S(0.033)S(0.958)T(0.007)QSLAR ; 169.98 2.86E-07 625220000 402920 462380 437000 124750 580770 401840 443980 464260 354390 422900 TRUE FALSE FALSE 374677.3887 425739.3248 606218.1033 290424.3045 507924.4111 352265.0664 332891.5081 358558.1327 385108.8105 317003.0874 1.181936087 1.343013181 1.912341322 0.916156076 1.602269604 1.111235444 1.050120713 1.131087194 1.21484246 1 18.27413737 -6.329477535 12.75292991 1.10631646 1.391012877 0.254317702 0.247950519 2.220324654 414.0355326 0.085171353 0.075107411 4.68E-07 6.329477535 0.284696417 ATSSHPNST(ph)SLK ddPTM_HeLa_A486_30min_R1 1 ATSSHPNSTSLK 12 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 ATSSHPNS(0.033)T(0.83)S(0.136)LK 62.861 0.0093389 0 210610 205890 134550 35614 203980 187830 235370 208280 165140 132180 TRUE FALSE FALSE 195847.3266 189574.5266 186651.3634 82911.19183 178394.9264 164657.4443 176477.9365 160859.1907 179454.4682 99081.26765 1.976633235 1.913323588 1.883820906 0.836799869 1.800490956 1.661842326 1.781143305 1.623507597 1.811184621 1 16.59632471 -10.87879843 2.587174928 0.666150274 1.687269642 0.318326024 0.30634316 25287267.55 13064419.39 51503690.19 0.078054268 1.32E-11 10.87879843 1.021119368 ATSSHPNSTS(ph)LK ddPTM_HeLa_A486_30min_R1 1 ATSSHPNSTSLK 12 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 ATSSHPNS(0.001)T(0.289)S(0.71)LK 118.21 0.00026644 0 351290 333750 220680 25469 313350 271870 343420 311420 289550 200130 TRUE FALSE FALSE 326666.3851 307302.4345 306133.206 59293.11913 274046.7211 238329.4436 257492.6837 240516.4643 314648.4271 150016.1454 2.177541519 2.048462409 2.040668391 0.395244918 1.826781514 1.588691957 1.716433141 1.603270526 2.097430422 1 17.19475825 -5.039807585 24.99937965 1.494409532 2.095894862 0.290886244 0.447845883 665.4980164 417935.7277 0.120919421 0.209479509 9.12E-06 5.039807585 0.60148533 ATSSSNPS(ph)SPAPDWYKDFVTDADAEVLEHSGK ddPTM_HeLa_A485_30min_R1 1 ATSSSNPSSPAPDWYKDFVTDADAEVLEHSGK 32 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 AT(0.001)S(0.001)S(0.007)S(0.006)NPS(0.493)S(0.493)PAPDWYKDFVTDADAEVLEHSGK 213.26 4.28E-30 74610000 88471 70245 52146 122660 111210 79017 129350 112640 75998 168390 TRUE FALSE FALSE 108151.0687 78459.5417 71436.97538 129360.6052 100137.5419 83154.20794 101713.3158 85014.86339 91250.10151 126413.472 0.855534359 0.620658071 0.565105714 1.023313443 0.79214296 0.65779546 0.804608197 0.672514266 0.721838425 1 16.9477907 -10.45054826 2.989392624 1.005832923 0.743431493 0.270230721 0.125187378 57684681.72 68687701.21 2827807.909 0.032186097 3.54E-11 10.45054826 -0.262401429 ATSSSNPSS(ph)PAPDWYKDFVTDADAEVLEHSGK ddPTM_HeLa_A486_30min_R1 2 ATSSSNPSSPAPDWYKDFVTDADAEVLEHSGK 32 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 ATSSS(0.001)NPS(0.389)S(0.61)PAPDWYKDFVTDADAEVLEHSGK;ATSSSNPS(0.414)S(0.585)PAPDWYKDFVTDADAEVLEHSGK ; 243.63 7.59E-51 195820000 92141 104187 68131 62305 125462 139521 163997 161394 96142 148021 TRUE FALSE FALSE 85682.39172 95930.84268 94513.14781 145049.1887 109725.3861 122308.3176 122963.216 124648.1094 104475.666 110955.5781 0.77222248 0.864587831 0.851810692 1.307272614 0.988912751 1.102317879 1.108220227 1.123405524 0.941599041 1 16.75962267 -5.096141976 10.33330601 1.084884462 0.828298302 0.589736628 0.096540854 0.310086921 31.5764281 0.024869937 0.043141959 8.01E-06 5.096141976 -0.25658616 ATSSSS(ph)GSLSATGR ddPTM_HeLa_A485_30min_R1 1 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATSSS(0.001)S(0.991)GS(0.008)LSATGR 299.66 3.81E-58 281630000 153360 224630 224550 146650 247580 274110 221030 300900 204420 208970 TRUE FALSE FALSE 187474.4029 250898.5245 307620.3893 154661.1182 222930.0659 288461.9757 173805.1349 227103.8032 245445.2189 156877.6248 1.19503596 1.599326384 1.960893975 0.98587111 1.421044372 1.838770673 1.107902641 1.447649424 1.564564859 1 17.25928007 -11.04469825 2.579868611 0.39685233 1.462489317 0.182310057 0.2907756 24639108.57 9456282.207 87717501.52 0.073566852 9.02E-12 11.04469825 1.065636987 ATSSSSGS(ph)LSATGR ddPTM_HeLa_A486_30min_R1 2 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATSSS(0.005)S(0.447)GS(0.548)LSATGR;ATSSS(0.002)S(0.197)GS(0.801)LSATGR ; 271.8 8.42E-49 359940000 389680 480990 429610 140443 590640 420800 499970 520050 377590 407620 TRUE FALSE FALSE 362365.4443 442874.6007 595966.4974 326958.4016 516556.4237 368885.9744 374872.2179 401645.9676 410319.8052 305549.2988 1.185947556 1.449437463 1.950475748 1.070067589 1.690582913 1.20728791 1.226879653 1.314504629 1.342892315 1 18.22104564 -6.299460827 24.8866469 1.238504806 1.47275089 0.20699948 0.243986125 934.3602257 611575.4859 0.083941293 0.074030997 5.02E-07 6.299460827 0.234246085 ATSSSSGSLS(ph)ATGR ddPTM_HeLa_A485_30min_R1 1 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATSSSSGSLS(0.999)ATGR 177.39 4.90E-13 199560000 144430 198510 192250 153910 246670 178500 206480 222320 169170 199810 TRUE FALSE FALSE 176557.9552 221724.0177 263371.2752 162317.7136 222110.6687 187845.984 162363.8612 167795.6714 203120.8673 150001.0442 1.177044841 1.478149828 1.755796278 1.082110557 1.480727483 1.252297842 1.082418206 1.118630022 1.354129688 1 17.19461302 -6.483991125 4.640807256 1.149570898 1.400996043 0.287530042 0.189759003 0.281973162 14.13171379 0.070558599 0.059346601 3.28E-07 6.483991125 0.251425145 ATSTS(ph)PNSQSSK ddPTM_HeLa_A485_30min_R1 4 ATSTSPNSQSSK 12 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 ATSTS(0.998)PNS(0.002)QSSK;ATS(0.003)T(0.024)S(0.959)PNS(0.013)QS(0.001)SK;ATSTS(0.992)PNS(0.007)QSSK;ATST(0.015)S(0.985)PNSQSSK ;;; 206.45 2.93E-17 757305000 1631030 1025515 458349 3435570 562763 2590610 894510 1145260 1287970 2206600 TRUE FALSE FALSE 1993846.997 1145440.058 627911.3686 3623246.49 506732.3397 2726250.334 703390.631 864383.1893 1546453.765 1656535.229 1.203624868 0.69146737 0.37905102 2.187243848 0.305898921 1.645754515 0.424615558 0.521801875 0.933547164 1 20.65973745 -6.839940719 24.99996855 0.680143806 1.036697548 0.083564664 0.55364498 87.87176684 27979.10062 0.222909097 0.150285312 1.45E-07 6.839940719 0.356553742 ATSTS(ph)PNSQSSK ddPTM_HeLa_A486_30min_R1 1 ATSTSPNSQSSK 12 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 ATST(0.004)S(0.864)PNS(0.131)QSSK 121.45 9.21E-05 208030000 236890 129490 267920 119260 141270 602500 195380 212030 637300 388080 TRUE FALSE FALSE 220285.2343 119228.7408 371665.7991 277643.3071 123550.5993 528169.6758 146493.8575 163755.3976 692541.6771 290902.242 0.757248321 0.409858446 1.277631264 0.954421338 0.424715184 1.815626006 0.503584491 0.562922432 2.380668063 1 18.15017489 -7.743277846 24.99890323 1.690334821 0.8501286 0.303369442 0.516233103 246.998361 339989.8739 0.334180111 0.125762454 1.81E-08 7.743277846 -0.840206221 ATSVALPGWS(ph)PSETR ddPTM_HeLa_A485_30min_R1 3 ATSVALPGWSPSETR 15 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 ATSVALPGWS(0.973)PS(0.022)ET(0.005)R;ATSVALPGWS(0.989)PS(0.011)ETR;ATSVALPGWS(0.982)PS(0.017)ETR ;; 171.46 2.90E-12 899930000 567280 710540 785420 575770 1019130 737740 788050 858690 746490 778940 TRUE FALSE FALSE 693469.4789 793631.4721 1075979.542 607222.8572 917661.8388 776366.9256 619676.6797 648094.9311 896303.6958 584764.5933 1.185895122 1.357181131 1.840021702 1.038405649 1.569284203 1.327657205 1.059702805 1.108300568 1.532759859 1 19.15749644 -6.544322895 12.3165759 1.185494663 1.405244628 0.160603098 0.240357921 1.61049801 917.5273327 0.08948119 0.06955787 2.86E-07 6.544322895 0.219749965 ATSVALPGWS(ph)PSETR ddPTM_HeLa_A486_30min_R1 2 ATSVALPGWSPSETR 15 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 ATSVALPGWS(0.951)PS(0.043)ET(0.006)R;ATSVALPGWS(0.963)PS(0.037)ETR ; 176.98 6.03E-13 1229270000 1484710 1791630 1619000 579220 2020610 1674420 1769520 1810510 1501370 1756610 TRUE FALSE FALSE 1380639.496 1649654.714 2245920.158 1348453.432 1767166.252 1467847.085 1326767.38 1398296.396 1631509.96 1316743.422 1.048525835 1.25282928 1.705662713 1.024082148 1.342073347 1.114755585 1.007612689 1.061935357 1.239049258 1 20.32854282 -6.362632137 5.238541168 1.080028289 1.283056738 0.209014623 0.185128209 0.375738433 15.65153341 0.066931919 0.058754669 4.34E-07 6.362632137 0.203028449 ATT(ph)PPNQGRPDS(ph)PVYANLQELK ddPTM_HeLa_A485_30min_R1 4 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 0 AT(0.479)T(0.521)PPNQGRPDS(0.906)PVY(0.094)ANLQELK;AT(0.185)T(0.815)PPNQGRPDS(0.936)PVY(0.064)ANLQELK;AT(0.197)T(0.803)PPNQGRPDS(0.998)PVY(0.002)ANLQELK;AT(0.041)T(0.959)PPNQGRPDS(0.99)PVY(0.01)ANLQELK ;;; 91.1 0.0013155 2663490000 1447580 1512410 1134040 1863720 1859770 1679970 2319170 2238180 1443190 2610280 TRUE FALSE FALSE 1769589.177 1689273.193 1553568.587 1965530.304 1674604.769 1767930.631 1823660.384 1689262.846 1732824.995 1959585.235 0.903042718 0.862056502 0.792804804 1.003033841 0.854571028 0.902196342 0.930635908 0.862051222 0.884281513 1 20.9021169 -11.13235395 2.295395794 1.225492436 0.887981507 0.293586668 0.051979207 16059650.47 4380294.185 18839232.84 0.012916982 7.37E-12 11.13235395 -0.337510929 ATT(ph)PPNQGRPDS(ph)PVYANLQELK ddPTM_HeLa_A486_30min_R1 3 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 0 AT(0.454)T(0.546)PPNQGRPDS(0.983)PVY(0.017)ANLQELK;AT(0.024)T(0.976)PPNQGRPDS(1)PVYANLQELK;AT(0.098)T(0.901)PPNQGRPDS(0.958)PVY(0.043)ANLQELK ;; 170.11 4.37E-14 2282370000 1234000 1238050 753115 562631 1289540 1354860 1655240 1615500 984370 1688730 TRUE FALSE FALSE 1147502.972 1139942.409 1044741.297 1309833.402 1127793.869 1187711.148 1241081.445 1247685.916 1069695.984 1265861.016 0.906499969 0.900527305 0.825320698 1.034737135 0.890930248 0.938263469 0.98042473 0.985642105 0.845034305 1 20.27168758 -5.24611954 24.99071954 0.950848193 0.87975713 0.283447906 0.055311544 1114.251696 1817637.018 0.014509239 0.025018173 5.67E-06 5.24611954 -0.071091063 ATT(ph)PQLTDVSEDLDQQSLPSEPEETLSR ddPTM_HeLa_A486_30min_R1 1 ATTPQLTDVSEDLDQQSLPSEPEETLSR 28 0 Q8NC44;H7C3D5;C9JIF3 Q8NC44 FAM134A Protein FAM134A 1 0 AT(0.186)T(0.798)PQLT(0.014)DVS(0.002)EDLDQQSLPSEPEETLSR 58.722 0.028899 28841000 18010 18860 19284 6606.3 21176 17920 20472 19142 17319 21760 TRUE FALSE FALSE 16747.592 17365.46491 26751.28124 15379.80026 18519.90862 15709.2126 15349.68907 14783.78447 18820.22486 16311.15437 1.026757005 1.064637396 1.640060577 0.942900785 1.13541373 0.963096311 0.941054736 0.906360404 1.15382544 1 13.99357127 ATTKPPPAK(ac)K ddPTM_HeLa_A486_30min_R1 2 ATTKPPPAKK 10 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; ATTKPPPAK(1)K;ATTKPPPAK(1)K 132.76 0.00066209 0 159133 165905 102890 64496 172107 157689 178407 170723 127016 180783 FALSE TRUE FALSE 147978.5985 152758.0836 142731.7635 150149.9474 150519.7352 138234.9344 133767.6816 131853.0998 138025.8491 135513.7601 1.091982086 1.127251458 1.053263989 1.108005175 1.110733959 1.020080428 0.98711512 0.9729868 1.01853752 1 17.04807983 -6.387064851 3.745851883 0.993411148 1.097861307 0.848405709 0.020986954 0.088681419 2.214423004 0.007767463 0.006735463 4.10E-07 6.387064851 0.10445016 ATVT(ph)PS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 ATVT(1)PS(1)PVK 163.12 3.05E-05 1664000000 5554300 3057400 3013200 10573000 5883900 3336300 5268800 3396800 4373300 12947000 TRUE FALSE FALSE 6789834.873 3414936.334 4127908.07 11150576.22 5298078.256 3510983.509 4143077.838 2563729.474 5250981.196 9719551.172 0.69857494 0.351347122 0.424701511 1.147231597 0.54509495 0.361228975 0.426262259 0.263770356 0.540249349 1 23.21245826 -8.064786372 21.74397293 1.000000002 0.522328848 0.262017609 0.237251918 11204.63832 3760560.182 0.242389455 0.062584516 8.61E-09 8.064786372 -0.477671154 ATVT(ph)PS(ph)PVK ddPTM_HeLa_A486_30min_R1 6 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK;ATVT(1)PS(1)PVK;AT(0.003)VT(0.997)PS(1)PVK ;;;;; 179.19 1.02E-07 10242550000 20184660 29104900 13985710 11613740 22096310 34139700 34863700 30917500 24464680 35081200 TRUE FALSE FALSE 18769819.57 26798521.73 19401351.46 27037373.65 19324784.76 29927890.92 26140433.51 23878260.17 26585298.16 26296639.18 0.713772564 1.019085425 0.737788252 1.028168408 0.734876599 1.138088054 0.994059862 0.908034674 1.010977029 1 24.64837509 -6.259214941 24.99990196 1.003473334 0.860339773 0.330563097 0.115323514 265.8989066 2988379.101 0.03664423 0.034988486 5.51E-07 6.259214941 -0.143133561 ATVT(ph)PS(ph)PVKGK ddPTM_HeLa_A485_30min_R1 7 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 ATVT(1)PS(1)PVKGK;AT(0.088)VT(0.912)PS(1)PVKGK;AT(0.211)VT(0.789)PS(1)PVKGK;AT(0.002)VT(0.998)PS(1)PVKGK;AT(0.003)VT(0.997)PS(1)PVKGK;AT(0.001)VT(0.999)PS(1)PVKGK;AT(0.002)VT(0.998)PS(1)PVKGK ;;;;;; 158.42 6.48E-07 14304246000 17162310 10640790 8722483 29548010 21209400 15362080 26564600 22343940 14007720 40325660 TRUE FALSE FALSE 20980006.65 11885137.83 11949292.43 31162142.97 19097717.67 16166414.75 20888856.2 16864053.68 16818940.92 30273215.1 0.693022085 0.392595824 0.394715011 1.02936351 0.630845373 0.534017107 0.690011158 0.557061866 0.555571678 1 24.85153857 -10.60100222 2.6923792 1.033020057 0.607653547 0.318716662 0.171678401 30493544.42 28475742.33 7115482.942 0.044917659 2.51E-11 10.60100222 -0.425366509 ATVT(ph)PS(ph)PVKGK ddPTM_HeLa_A486_30min_R1 9 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 AT(0.071)VT(0.93)PS(1)PVKGK;AT(0.434)VT(0.566)PS(1)PVKGK;AT(0.156)VT(0.844)PS(1)PVKGK;AT(0.01)VT(0.99)PS(1)PVKGK;AT(0.307)VT(0.694)PS(1)PVKGK;AT(0.096)VT(0.904)PS(1)PVKGK;AT(0.075)VT(0.925)PS(1)PVKGK;AT(0.015)VT(0.985)PS(1)PVKGK;AT(0.066)VT(0.935)PS(0.999)PVKGK ;;;;;;;; 182.33 2.98E-09 28308080000 15733030 17387340 8183620 10704460 17888830 23286280 29075620 26933350 13208970 26003950 TRUE FALSE FALSE 14630225.84 16009503.85 11352536.83 24920523.85 15645046.13 20413455.53 21800592.35 20801214.16 14353934.15 19492391.66 0.750560839 0.821320653 0.582408615 1.278474406 0.802623219 1.047252481 1.118415468 1.0671453 0.736386504 1 24.21640778 -5.244754794 24.99863198 1.007763707 0.728419106 0.425170736 0.153896787 802.0448253 1201707.835 0.040348389 0.06963451 5.69E-06 5.244754794 -0.279344601 ATVTPS(ph)PVK ddPTM_HeLa_A485_30min_R1 9 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 ATVT(0.004)PS(0.996)PVK;ATVT(0.006)PS(0.994)PVK;ATVT(0.004)PS(0.996)PVK;ATVT(0.01)PS(0.99)PVK;ATVT(0.061)PS(0.939)PVK;ATVT(0.124)PS(0.876)PVK;ATVT(0.034)PS(0.966)PVK;ATVT(0.092)PS(0.908)PVK;ATVT(0.084)PS(0.916)PVK ;;;;;;;; 213.35 1.32E-10 77073300000 77064790 45934880 53127740 146918900 78720900 48007490 80617000 49761780 64341850 171470400 TRUE FALSE FALSE 94207586.67 51306564.64 72781901.86 154944707.5 70883170.79 50521087.94 63392519.37 37557625.43 77254669.12 128725985 0.731845918 0.398571933 0.565401786 1.203678554 0.550651609 0.392470005 0.492460939 0.291764133 0.600148207 1 26.93972807 -10.54117721 2.722776839 1.023891503 0.575764061 0.216215577 0.239282236 32666936.49 32639243.9 5717837.295 0.065823407 2.88E-11 10.54117721 -0.448127441 ATVTPS(ph)PVK ddPTM_HeLa_A486_30min_R1 7 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 ATVT(0.02)PS(0.98)PVK;ATVT(0.02)PS(0.98)PVK;ATVT(0.06)PS(0.94)PVK;ATVT(0.135)PS(0.865)PVK;ATVT(0.062)PS(0.938)PVK;ATVT(0.022)PS(0.978)PVK;ATVT(0.113)PS(0.887)PVK ;;;;;; 215.79 6.52E-12 1.20E+11 79779100 116530500 63122400 42709700 95972100 131858800 138801200 123009300 101809400 127689000 TRUE FALSE FALSE 74186997.07 107296198.8 87565083.76 99430340.03 83934384.31 115591401.9 104071671.7 95002767.66 110634320.8 95714843.28 0.775083514 1.120998532 0.914853755 1.038818397 0.876921295 1.207664328 1.087309639 0.992560447 1.15587423 1 26.51223934 -6.250970876 24.97857816 1.088131005 0.95859429 0.312942295 0.105285241 943.4234658 2251073.909 0.033040373 0.032699373 5.61E-07 6.250970876 -0.129536714 ATVTPS(ph)PVKGK ddPTM_HeLa_A485_30min_R1 6 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 ATVT(0.001)PS(0.999)PVKGK;AT(0.001)VT(0.002)PS(0.997)PVKGK;ATVT(0.005)PS(0.995)PVKGK;ATVT(0.002)PS(0.998)PVKGK;ATVT(0.004)PS(0.996)PVKGK;ATVTPS(1)PVKGK ;;;;; 175.29 6.58E-09 1.07E+11 12043632 9574140 7664029 19576600 16041880 11952330 20702590 18125770 10802640 24048830 TRUE FALSE FALSE 14722696.39 10693752.39 10499272.25 20646020.09 14444694.1 12578135.52 16279312.52 13680396.49 12970630.76 18053899.27 0.815485684 0.592323699 0.581551503 1.143576785 0.800087221 0.696699108 0.901706179 0.757753009 0.7184393 1 24.10580713 -14 0.230319532 2.13807404 0.75603044 0.150081048 0.153873567 340.8340761 3.412169239 181.9514994 0.27946003 1.00E-14 14 -1.382043601 ATVTPS(ph)PVKGK ddPTM_HeLa_A486_30min_R1 8 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 ATVT(0.001)PS(0.999)PVKGK;ATVTPS(1)PVKGK;ATVT(0.034)PS(0.966)PVKGK;ATVT(0.001)PS(0.999)PVKGK;ATVT(0.052)PS(0.948)PVKGK;ATVT(0.002)PS(0.998)PVKGK;AT(0.001)VT(0.377)PS(0.622)PVKGK;ATVT(0.005)PS(0.995)PVKGK ;;;;;;; 160.18 9.70E-08 1.55E+11 24301660 28028040 14819530 14775430 29294070 31354480 42520390 40930670 21168190 36576870 TRUE FALSE FALSE 22598239.13 25806996.03 20558048.9 34397947.75 25619734.58 27486283.05 31881338.69 31611649.95 23003065.75 27417783.68 0.824218303 0.941250261 0.749807101 1.254585278 0.934420334 1.002498355 1.162797805 1.152961535 0.838983414 1 24.70860862 -5.242506578 24.99965677 1.053809106 0.848707729 0.387866071 0.12120149 870.7616906 1149788.494 0.032019803 0.055340768 5.72E-06 5.242506578 -0.205101377 AVAGVMITAS(ph)HNR ddPTM_HeLa_A485_30min_R1 4 AVAGVMITASHNR 13 0 Q6PCE3 Q6PCE3 PGM2L1 "Glucose 1,6-bisphosphate synthase" 1 0 AVAGVMIT(0.012)AS(0.988)HNR;AVAGVMITAS(1)HNR;AVAGVMIT(0.008)AS(0.992)HNR;AVAGVMIT(0.001)AS(0.999)HNR ;;; 196.97 1.72E-21 2768840000 1047560 1174664 1309156 976517 1418660 1083501 1384838 1344966 998111 1240373 TRUE FALSE FALSE 1280586.108 1312030.737 1793467.283 1029861.651 1277413.229 1140231.437 1088956.048 1015110.98 1198422.722 931170.8385 1.375242925 1.40901184 1.926034632 1.105985721 1.371835518 1.224513687 1.169448186 1.090144727 1.287006286 1 19.82868635 -5.298691305 24.99979635 1.191780983 1.553988344 0.525629989 0.169975026 451.3952832 302930.816 0.047360176 0.070248353 5.03E-06 5.298691305 0.36220736 AVAGVMITAS(ph)HNR ddPTM_HeLa_A486_30min_R1 7 AVAGVMITASHNR 13 0 Q6PCE3 Q6PCE3 PGM2L1 "Glucose 1,6-bisphosphate synthase" 1 0 AVAGVMIT(0.01)AS(0.99)HNR;AVAGVMIT(0.001)AS(0.999)HNR;AVAGVMIT(0.017)AS(0.983)HNR;AVAGVMITAS(1)HNR;AVAGVMITAS(1)HNR;AVAGVMITAS(1)HNR;AVAGVMITAS(1)HNR ;;;;;; 251.91 2.01E-36 2642800000 2504812 3065170 3158110 1053562 3358690 2787160 3154130 3423740 2492386 2935170 TRUE FALSE FALSE 2329237.614 2822274.766 4381014.769 2452745.58 2937411.782 2443308.537 2364933.313 2644229.142 2708428.025 2200184.327 1.05865567 1.282744691 1.991203516 1.114790952 1.335075314 1.110501746 1.074879629 1.201821642 1.231000508 1 21.06919296 AVAS(ph)PEATVSQTDENK ddPTM_HeLa_A485_30min_R1 3 AVASPEATVSQTDENK 16 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AVAS(1)PEATVSQTDENK;AVAS(1)PEATVSQTDENK;AVAS(1)PEATVSQTDENK ;; 311.95 3.62E-78 939300000 405450 320770 293718 573180 483530 359030 514050 477670 387150 717160 TRUE FALSE FALSE 495640.9537 358281.2612 402376.5108 604491.372 435388.0554 377828.2556 404219.0181 360520.6835 464847.4538 538385.2104 0.920606555 0.665473817 0.747376605 1.122785991 0.808692451 0.701780525 0.75079889 0.669633334 0.863410519 1 19.03827925 -5.995414144 24.99936099 0.771543032 0.857066072 0.032865568 0.141314817 388.4112969 2117362.882 0.044667799 0.050464908 1.01E-06 5.995414144 0.08552304 AVAS(ph)PEATVSQTDENK ddPTM_HeLa_A486_30min_R1 3 AVASPEATVSQTDENK 16 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 AVAS(1)PEATVSQTDENK;AVAS(1)PEATVSQTDENK;AVAS(1)PEATVSQTDENK ;; 354.81 6.05E-142 385660000 491540 473100 260974 198246 440750 529340 609980 573270 337670 612990 TRUE FALSE FALSE 457085.5843 435609.833 362030.1219 461526.7068 385467.0252 464035.4127 457356.5523 442748.9354 366939.5075 459493.3141 0.994760033 0.948022136 0.787889858 1.004425293 0.83889583 1.009885016 0.995349743 0.963559037 0.798574204 1 18.80968434 -6.280612434 24.85913618 0.953813286 0.914573136 0.051685134 0.082821844 2787.80552 3614562.213 0.029035003 0.025637346 5.24E-07 6.280612434 -0.03924015 AVCVLK ddPTM_HeLa_A485_30min_R1 2 AVCVLK 6 0 P00441 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 0 ; ; 118.11 0.022277 52426000 59245 68074 76231 72794 96341 69701 85021 75811 80561 107394 FALSE FALSE TRUE 72423.84586 76034.66213 104432.0191 76770.5519 86748.95177 73350.43658 66855.56879 57218.23338 96728.85375 80622.65224 0.898306417 0.943093039 1.295318577 0.95222062 1.075987323 0.90979935 0.829240504 0.709704181 1.199772658 1 16.29889762 -6.274620586 21.80392284 0.905280852 1.038078328 0.088275318 0.155977405 292.8874304 484480.4429 0.054518537 0.048484077 5.31E-07 6.274620586 0.132797476 AVDDGVNTFK(ac)VLTR ddPTM_HeLa_A485_30min_R1 2 AVDDGVNTFKVLTR 14 1 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 1 ; AVDDGVNTFK(1)VLTR;AVDDGVNTFK(1)VLTR 309.35 1.11E-79 141175000 69888 97844 100020 69304 114365 91744 102981 109978 92949 101427 FALSE TRUE FALSE 85434.34449 109286.0047 137021.5602 73089.90203 102978.419 96547.57398 80978.26807 83005.72306 111603.0117 76143.11553 1.122023231 1.435270988 1.799526579 0.959901647 1.352432434 1.267975093 1.06350085 1.090127748 1.465700621 1 16.21642598 -5.279293778 24.93393091 1.182206322 1.450573413 0.267334633 0.212564817 1079.141836 1507034.857 0.059554132 0.088538693 5.26E-06 5.279293778 0.268367091 AVDDGVNTFK(ac)VLTR ddPTM_HeLa_A486_30min_R1 2 AVDDGVNTFKVLTR 14 1 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 1 ; AVDDGVNTFK(1)VLTR;AVDDGVNTFK(1)VLTR 228.02 8.99E-22 131546000 95636 122290 118838 32833 143602 109463 120410 129745 100647 109898 FALSE TRUE FALSE 88932.41026 112599.295 164855.2562 76436.88329 125590.0981 95958.568 90282.14443 100204.8958 109371.163 82378.82548 1.079554239 1.366847541 2.001184834 0.927870516 1.524543442 1.164845061 1.095938719 1.216391412 1.327661111 1 16.32998594 -6.073727989 1.331107739 1.170421831 1.414837228 0.112118462 0.279932735 0.985330819 3.586666034 0.123464098 0.130727731 8.44E-07 6.073727989 0.244415396 AVDITT(ph)PK ddPTM_HeLa_A485_30min_R1 5 AVDITTPK 8 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 AVDIT(0.023)T(0.977)PK;AVDIT(0.195)T(0.805)PK;AVDIT(0.092)T(0.908)PK;AVDIT(0.092)T(0.908)PK;AVDIT(0.227)T(0.773)PK ;;;; 112.13 0.0054744 10464930000 12107900 11088800 8512420 18295000 15316000 12371200 18759700 19016400 10432700 23522000 TRUE FALSE FALSE 14801260.58 12385538.7 11661518.39 19294409.52 13791085.26 13018936.9 14751536.84 14352598.08 12526447.2 17658398.29 0.838199498 0.701396497 0.660395026 1.092647771 0.780992989 0.737266013 0.835383629 0.812791616 0.709376184 1 24.07385115 -11.330112 2.256643467 2.123963425 0.797830037 0.222560589 0.11408098 10579876.97 970723.2983 61031220.59 0.028914959 4.68E-12 11.330112 -1.326133388 AVDITT(ph)PK ddPTM_HeLa_A486_30min_R1 5 AVDITTPK 8 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 AVDIT(0.043)T(0.957)PK;AVDIT(0.084)T(0.916)PK;AVDIT(0.003)T(0.997)PK;AVDIT(0.066)T(0.934)PK;AVDIT(0.13)T(0.87)PK ;;;; 138.22 0.0021789 10903640000 17502000 17558900 9887400 9787900 15795000 18581200 24885900 22510400 12805300 24997200 TRUE FALSE FALSE 16275200.18 16167468.82 13716066.07 22786725.85 13813843.82 16288840.46 18659184.6 17385273.32 13915273.71 18737738.42 0.868578684 0.862829252 0.732002218 1.216087307 0.737220443 0.869306642 0.995807722 0.927821327 0.742633578 1 24.1594435 -3.694570579 0.011230864 1.730789412 1.14E-06 0.02824577 0.140254946 30943.0838 46.1558384 3226.104121 3912.890459 0.000202036 3.694570579 -1.730788277 AVDLGPPKPS(ph)DQETGEQVSSPSSHPALHTTTEDSAGVQTEF ddPTM_HeLa_A485_30min_R1 1 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF 41 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AVDLGPPKPS(0.283)DQET(0.283)GEQVS(0.089)S(0.089)PS(0.089)S(0.089)HPALHT(0.026)T(0.026)T(0.026)EDSAGVQTEF 49.631 0.011518 148910000 21996 39762 44609 18304 42152 51580 34956 52008 56250 29961 TRUE FALSE FALSE 26888.93431 44411.82002 61111.72544 19303.90117 37955.19888 54280.64904 27487.36504 39252.95645 67538.85904 22492.27409 1.195474242 1.974536671 2.717009636 0.858245862 1.687477163 2.413301955 1.222080299 1.74517509 3.002758137 1 14.45714191 -4.25483537 22.99432755 1.859532641 1.195473321 0.077086142 0.674723322 682.8628568 2377433.273 0.163042832 1.457363624 5.56E-05 4.25483537 -0.66405932 AVDLGPPKPSDQETGEQVS(ph)SPSSHPALHTTTEDSAGVQTEF ddPTM_HeLa_A485_30min_R1 2 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF 41 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AVDLGPPKPSDQET(0.002)GEQVS(0.418)S(0.418)PS(0.075)S(0.075)HPALHT(0.004)T(0.004)T(0.004)EDSAGVQTEF;AVDLGPPKPSDQET(0.003)GEQVS(0.497)S(0.497)PS(0.001)S(0.001)HPALHTTTEDSAGVQTEF ; 209.72 5.75E-31 1606290000 241500 419885 372444 163122 581190 342294 449620 518240 393068 365827 TRUE FALSE FALSE 295220.8418 468986.8982 510226.5343 172032.9418 523324.6829 360215.9846 353555.0139 391140.8274 471953.1422 274633.0614 1.074964683 1.707685505 1.857848183 0.626410167 1.905541453 1.311626439 1.287372365 1.424230664 1.718486258 1 18.06714579 -10.10539435 5.491005553 0.99999465 1.437153292 0.110099389 0.370884199 2.31E-05 3.77E-06 0.341994385 0.082944808 7.85E-11 10.10539435 0.437158642 AVDLGPPKPSDQETGEQVS(ph)SPSSHPALHTTTEDSAGVQTEF ddPTM_HeLa_A486_30min_R1 2 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF 41 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AVDLGPPKPS(0.001)DQET(0.038)GEQVS(0.475)S(0.475)PS(0.005)S(0.005)HPALHTTTEDSAGVQTEF;AVDLGPPKPSDQET(0.002)GEQVS(0.47)S(0.47)PS(0.026)S(0.026)HPALHT(0.002)T(0.002)T(0.002)EDSAGVQTEF ; 118.46 3.87E-07 1283790000 92154 92103 69323 21931.4 102538 69672 91764 77869 82333 73570 TRUE FALSE FALSE 85694.48048 84804.42285 96166.72213 51057.40755 89676.72791 61076.57701 68803.67662 60139.92857 89469.69073 55147.59314 1.553911524 1.537771968 1.743806332 0.92583202 1.626122244 1.107511199 1.247627915 1.090526805 1.622368006 1 15.7510103 -5.241922246 24.99901424 1.247156342 1.604424152 0.367749082 0.227857383 902.1184029 1155499.779 0.057870622 0.100047453 5.73E-06 5.241922246 0.35726781 AVDLGPPKPSDQETGEQVSS(ph)PSSHPALHTTTEDSAGVQTEF ddPTM_HeLa_A485_30min_R1 1 AVDLGPPKPSDQETGEQVSSPSSHPALHTTTEDSAGVQTEF 41 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AVDLGPPKPSDQETGEQVS(0.171)S(0.827)PS(0.001)S(0.001)HPALHTTTEDSAGVQTEF 204.09 1.14E-30 1063500000 238130 411040 385910 138500 553040 317040 428770 440720 383750 324250 TRUE FALSE FALSE 291101.197 459107.5524 528674.1681 146065.9043 497977.3958 333639.7242 337159.7868 332632.729 460765.105 243420.4424 1.195878186 1.886068187 2.171856081 0.60005603 2.045750106 1.370631492 1.385092326 1.366494637 1.892877609 1 17.8930908 -10.86800729 2.56931602 0.750043498 1.546178318 0.119171404 0.445385156 30458750.19 18339256.68 46452489.17 0.109535113 1.36E-11 10.86800729 0.79613482 AVDNGRPQKSSTTRLHIEWISK ddPTM_HeLa_A485_30min_R1 1 AVDNGRPQKSSTTRLHIEWISK 22 3 A0A087WVP1;Q14517 A0A087WVP1 FAT1 "Protocadherin Fat 1;Protocadherin Fat 1, nuclear form" 0 0 49.973 0.028937 31369000 12351 4814.8 4947.5 36385 10173 14525 18349 14523 7843.6 43225 FALSE FALSE TRUE 15098.43734 5377.848977 6777.786133 38372.62042 9160.1404 15285.50654 14428.58625 10961.21148 9417.738574 32449.803 0.465285948 0.165728247 0.20886987 1.182522446 0.282286472 0.471050827 0.444643262 0.33778977 0.29022483 1 14.9859221 -10.3456178 3.861697557 1.001668822 0.430532233 0.285421776 0.271672132 203882475.9 412394870.8 4078995.248 0.068280037 4.51E-11 10.3456178 -0.571136589 AVDS(ph)SSEEIEVEVPVVDRR ddPTM_HeLa_A485_30min_R1 2 AVDSSSEEIEVEVPVVDRR 19 1 D6RB01;Q9Y6X4 D6RB01 FAM169A Soluble lamin-associated protein of 75 kDa 1 0 AVDS(0.811)S(0.166)S(0.023)EEIEVEVPVVDRR;AVDS(0.92)S(0.074)S(0.006)EEIEVEVPVVDRR ; 309.01 1.14E-89 579620000 77570 123881 112485 92856 151389 112901 124247 150091 110785 114216 TRUE FALSE FALSE 94825.17889 138367.8053 154097.8824 97928.48816 136316.1796 118812.3218 97700.61345 113280.9469 133018.5333 85744.05319 1.105909685 1.613730634 1.797184489 1.142102391 1.58980331 1.385662531 1.139444776 1.321152228 1.551344127 1 16.387749 -6.52876284 24.19920908 1.277291592 1.463733753 0.130550346 0.235369434 234.830189 965754.4701 0.088550828 0.068814462 2.96E-07 6.52876284 0.186442161 AVDS(ph)SSEEIEVEVPVVDRR ddPTM_HeLa_A486_30min_R1 1 AVDSSSEEIEVEVPVVDRR 19 1 D6RB01;Q9Y6X4 D6RB01 FAM169A Soluble lamin-associated protein of 75 kDa 1 0 AVDS(0.836)S(0.16)S(0.004)EEIEVEVPVVDRR 190.79 1.09E-18 336760000 34534 31751 30449 13783 44725 26592 33004 32619 29274 32851 TRUE FALSE FALSE 32113.34493 29234.93512 42239.66825 32087.52055 39115.17346 23311.34941 24746.05012 25192.36577 31811.49389 24624.89578 1.304100745 1.187210512 1.715323737 1.303052035 1.588440163 0.94665779 1.004919994 1.023044564 1.291842783 1 14.58783 -6.267864896 24.99482418 1.05170999 1.416664883 0.55284287 0.164716862 409.2060308 1591779.278 0.057305499 0.05173484 5.40E-07 6.267864896 0.364954893 AVEELLECLDLEK ddPTM_HeLa_A485_30min_R1 2 AVEELLECLDLEK 13 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 0 0 ; ; 70.488 0.025257 193480000 216000 714460 839240 16116.9 1468550 78693 85782 64114 150286 25041 FALSE FALSE TRUE 264048.4548 798009.882 1149709.8 16997.32544 1322336.006 82813.2438 67453.97493 48389.94097 180447.0217 18798.73955 14.0460723 42.45018024 61.158877 0.904173676 70.34173767 4.405255129 3.588217963 2.574105613 9.598889397 1 14.19834831 -6.42698805 24.99877975 4.274883706 37.29840619 0.438899081 18.96146051 46.93693669 12232.12914 6.336305152 5.588094074 3.74E-07 6.42698805 33.02352248 AVEES(ph)S(ph)DEER ddPTM_HeLa_A485_30min_R1 2 AVEESSDEER 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 AVEES(1)S(1)DEER;AVEES(1)S(1)DEER ; 95.094 0.0051308 8227000000 4047900 5296800 4544800 4048600 4266300 4136300 4337600 4111700 4120700 4670700 TRUE FALSE FALSE 4948341.39 5916214.684 6226110.645 4269764.766 3841532.192 4352870.272 3410836.325 3103299.128 4947686.693 3506380.448 1.411239158 1.687271182 1.775651769 1.217712918 1.095583394 1.241414141 0.972751353 0.885043473 1.411052442 1 21.74155111 -5.397085582 4.515675049 1.100221992 1.628203788 0.675239979 0.162496289 0.129848028 4.177563225 0.046579794 0.070211503 4.01E-06 5.397085582 0.527981796 AVEES(ph)S(ph)DEER ddPTM_HeLa_A486_30min_R1 1 AVEESSDEER 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 AVEES(1)S(1)DEER 158.01 2.59E-06 3967500000 7627400 9666700 6892100 2408500 8069200 7884500 7495900 7986900 8259300 8831800 TRUE FALSE FALSE 7092758.648 8900675.486 9560905.697 5607109.719 7057085.694 6911790.554 5620346.536 6168457.223 8975222.774 6620259.795 1.071371648 1.344460152 1.444188898 0.846962188 1.065983196 1.044036151 0.848961629 0.931754556 1.355720629 1 22.6584564 -5.260413059 24.99889877 1.007124608 1.292452222 0.378180264 0.160421455 94.73229073 2307442.324 0.044278096 0.071419458 5.49E-06 5.260413059 0.285327614 AVEES(ph)S(ph)DEERQR ddPTM_HeLa_A485_30min_R1 4 AVEESSDEERQR 12 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR ;;; 165.36 9.58E-10 22687290000 3637490 5304710 6003810 4131300 7967730 5562470 6898130 8356270 5263140 5713960 TRUE FALSE FALSE 4446637.101 5925049.69 8224869.158 4356982.458 7174434.825 5853712.328 5424288.173 6306881.68 6319403.922 4289574.93 1.036614857 1.381267325 1.917408903 1.015714268 1.672528151 1.364636922 1.264528132 1.470281271 1.473200498 1 22.03240326 -9.944997055 9.974635574 1.000000377 1.408086826 0.179780226 0.255462337 0 0 0.236739971 0.057417877 1.14E-10 9.944997055 0.408086449 AVEES(ph)S(ph)DEERQR ddPTM_HeLa_A486_30min_R1 4 AVEESSDEERQR 12 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR;AVEES(1)S(1)DEERQR ;;; 172.09 4.67E-10 15459570000 4589000 5757520 5826150 2279360 8248160 5283050 6576080 7149330 4588360 5283070 TRUE FALSE FALSE 4267334.798 5301273.147 8082191.31 5306465.272 7213598.862 4631281.005 4930675.229 5521583.628 4986082.739 3960154.885 1.077567651 1.338652982 2.040877578 1.339964074 1.821544629 1.169469665 1.24507131 1.394284766 1.259062558 1 21.91712543 -6.295333728 24.93916083 1.240188776 1.531962077 0.249841793 0.2665289 982.0086811 722550.1866 0.094894448 0.083693243 5.07E-07 6.295333728 0.291773301 AVEES(ph)SDEERQR ddPTM_HeLa_A485_30min_R1 1 AVEESSDEERQR 12 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 AVEES(0.92)S(0.08)DEERQR 209.39 9.55E-18 321010000 94757 176610 210940 131380 282140 224050 234810 336840 228750 216020 TRUE FALSE FALSE 115835.3677 197263.0032 288975.4839 138556.9567 254049.1509 235780.9116 184640.9253 254229.4619 274658.0268 162170.1896 0.714282742 1.216394972 1.781927275 0.854392272 1.566558883 1.453910316 1.138562678 1.567670745 1.693640659 1 17.30714912 -4.323573972 3.772327517 1.389315295 0.682628641 0.326265836 0.286493556 0.248080227 6.216102561 0.069088569 0.425145762 4.75E-05 4.323573972 -0.706686654 AVEFSSGAKS(ph)PSK ddPTM_HeLa_A485_30min_R1 3 AVEFSSGAKSPSK 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 AVEFS(0.004)S(0.024)GAKS(0.967)PS(0.004)K;AVEFS(0.016)S(0.056)GAKS(0.798)PS(0.13)K;AVEFS(0.037)S(0.037)GAKS(0.706)PS(0.221)K ;; 91.065 0.00074591 1742400000 2115460 1460380 928710 4310920 2297160 1979720 3794510 3114070 1532480 5468450 TRUE FALSE FALSE 2586036.779 1631158.737 1272278.476 4546414.644 2068446.685 2083375.078 2983781.94 2350339.45 1840034.679 4105266.054 0.629931591 0.397333258 0.309913769 1.107459196 0.503852042 0.507488443 0.726818165 0.57251818 0.448213259 1 21.96904429 -11.1906603 2.283451834 2.143295516 0.580469608 0.268095215 0.209062978 32378204.82 6411466.074 191417362.6 0.057900524 6.45E-12 11.1906603 -1.562825908 AVEFSSGAKS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 AVEFSSGAKSPSK 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 AVEFS(0.004)S(0.022)GAKS(0.965)PS(0.01)K;AVEFSS(0.001)GAKS(0.962)PS(0.037)K ; 97.502 0.0004913 1006420000 1333380 1253710 540150 1056210 1324130 1787390 2479300 2266160 1010340 2667700 TRUE FALSE FALSE 1239916.948 1154361.454 749310.5457 2458910.258 1158045.268 1566879.995 1858952.917 1750204.838 1097917.085 1999690.556 0.62005441 0.577270043 0.374713249 1.229645382 0.579112236 0.783561231 0.929620291 0.875237837 0.549043491 1 20.93134534 -5.223889289 24.9998454 0.833591648 0.529338327 0.368394721 0.194466627 638.7246741 425245.0689 0.050829019 0.088035745 5.97E-06 5.223889289 -0.304253322 AVEHINK ddPTM_HeLa_A485_30min_R1 1 AVEHINK 7 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 103.29 0.013232 428570000 794950 670390 425840 792760 442650 990650 678220 1103300 663870 925100 FALSE FALSE TRUE 971783.885 748786.2789 583375.9367 836066.4714 398578.2118 1042518.902 533312.7565 832713.9451 797102.6196 694489.5952 1.399277817 1.078182141 0.840006734 1.203857448 0.573915311 1.50112962 0.767920441 1.199030123 1.147753149 1 19.40559355 -4.278691849 4.468210864 1.029768289 1.419336666 0.166186263 0.246734226 0.309703906 15.26362792 0.05716712 0.367607283 5.26E-05 4.278691849 0.389568377 AVEHINK ddPTM_HeLa_A486_30min_R1 1 AVEHINK 7 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 89.673 0.023964 200960000 382020 271210 426680 249900 1016200 718620 349250 337090 483870 439240 FALSE FALSE TRUE 355242.3708 249718.3319 591901.9229 581779.8292 888738.7203 629963.9708 261863.956 260341.9656 525812.2412 329251.445 1.078939443 0.75844263 1.797720046 1.7669773 2.699270523 1.91332181 0.795331228 0.79070865 1.596992964 1 18.32883025 -6.761201135 24.99999069 1.028317234 1.684837552 0.251935578 0.525454442 10.19884917 1070388.02 0.236305358 0.171373499 1.73E-07 6.761201135 0.656520318 AVEHINK(ac)TIAPALVSK ddPTM_HeLa_A485_30min_R1 1 AVEHINKTIAPALVSK 16 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 AVEHINK(1)TIAPALVSK 148.56 1.38E-08 58670000 45628 50663 47640 47204 68190 60908 72660 75171 51439 72901 FALSE TRUE FALSE 55777.79119 56587.59714 65264.01847 49782.63499 61400.76417 64097.0487 57135.59742 56735.19439 61762.33547 54728.12234 1.019179698 1.033976587 1.192513386 0.909635355 1.121923456 1.171190349 1.043989725 1.036673505 1.128530138 1 15.73999474 -4.546594582 24.99825033 1.077442329 1.022878612 0.057882285 0.07973075 570.7073228 601565.9687 0.019749876 0.052260314 2.84E-05 4.546594582 -0.054563717 AVEHINK(ac)TIAPALVSK ddPTM_HeLa_A486_30min_R1 1 AVEHINKTIAPALVSK 16 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 AVEHINK(1)TIAPALVSK 137.14 7.55E-07 55515000 74276 82294 67855 29826 106060 84325 97444 100470 74718 98590 FALSE TRUE FALSE 69069.63596 75772.72373 94130.27322 69436.43532 92756.96583 73921.83885 73062.48054 77595.17424 81194.6164 73902.42229 0.934605847 1.025307715 1.273710256 0.93956914 1.255127545 1.000262732 0.988634449 1.049967942 1.098673276 1 16.17333403 AVELAANTK ddPTM_HeLa_A485_30min_R1 2 AVELAANTK 9 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 265.95 4.90E-33 431860000 824240 991980 867360 928560 1174510 1091600 1325530 1425230 860310 1268890 FALSE FALSE TRUE 1007589.344 1107983.432 1188232.558 979284.8816 1057571.66 1148754.488 1042319.687 1075690.108 1032966.326 952579.0752 1.057748769 1.163140637 1.247384694 1.028035265 1.110219286 1.205941342 1.094208044 1.129239699 1.084389058 1 19.86147933 -8.196329533 1.297567539 0.99991834 1.133935079 0.291596877 0.061669498 0.967120465 3.185012507 0.059231141 0.017917403 6.36E-09 8.196329533 0.134016739 AVELAANTK ddPTM_HeLa_A486_30min_R1 2 AVELAANTK 9 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 221.94 8.12E-17 163874000 353690 383660 262600 113254 426290 372570 410100 404240 320200 443250 FALSE FALSE TRUE 328898.1575 353257.3843 364285.7527 263661.0355 372820.7332 326606.1014 307488.6424 312203.3765 347955.1938 332257.3149 0.989889892 1.063204235 1.096396486 0.793544713 1.12208435 0.982991455 0.925453342 0.93964335 1.04724615 1 18.34194144 AVEMHAAVIAAVK(ac)PLSSSSVLQEPPAKK ddPTM_HeLa_A485_30min_R1 1 AVEMHAAVIAAVKPLSSSSVLQEPPAKK 28 2 O75152 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 0 1 AVEMHAAVIAAVK(1)PLSSSSVLQEPPAKK 85.982 0.00018395 8831400 9559.5 9056.2 8136.3 14995 15090 11576 17130 16474 10449 25646 FALSE TRUE FALSE 11685.9778 10115.24381 11146.25595 15814.13888 13587.58662 12182.10146 13470.03556 12433.72567 12546.01846 19252.92418 0.606971579 0.525387402 0.578938339 0.821388935 0.705741449 0.632740323 0.699635829 0.645809725 0.651642231 1 14.23278996 -14 0.247473518 3.047935788 0.62207459 0.661207059 0.075135575 121.4270443 1.207315011 125.7541075 0.123458358 1.00E-14 14 -2.425861198 AVEMHAAVIAAVK(ac)PLSSSSVLQEPPAKK ddPTM_HeLa_A486_30min_R1 1 AVEMHAAVIAAVKPLSSSSVLQEPPAKK 28 2 O75152 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 0 1 AVEMHAAVIAAVK(0.999)PLSSSSVLQEPPAK(0.001)K 60.139 0.022238 7010000 16250 17644 12128 7126.5 21502 20433 26489 25207 18339 21593 FALSE TRUE FALSE 15110.95892 16245.82518 16824.2864 16590.85215 18805.01866 17912.18421 19861.17203 19467.91636 19928.63929 16185.97225 0.933583641 1.003697827 1.039436256 1.025014247 1.161809644 1.106648642 1.227060798 1.202764719 1.231229053 1 13.98245641 -5.510595673 0.953546878 1.17791002 0.960477629 0.546125974 0.068564618 0.425000549 0.784806224 0.028688111 0.062566455 3.09E-06 5.510595673 -0.217432391 AVET(ph)PPLSSVNLLEGLSR ddPTM_HeLa_A486_30min_R1 1 AVETPPLSSVNLLEGLSR 18 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7;B4DGD8;A0A0A0MQV8;B0QZ65 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 AVET(0.998)PPLS(0.001)S(0.001)VNLLEGLSR 90.754 0.0035612 28182000 14363 14927 13595 6246 17700 16083 14349 15064 12228 13356 TRUE FALSE FALSE 13356.22787 13744.13016 18859.34809 14541.00366 15479.90095 14098.84298 10758.72843 11634.25604 13287.93289 10011.57067 1.334079168 1.372824566 1.883755178 1.452419819 1.546201038 1.408254853 1.074629425 1.162080999 1.327257563 1 13.28938071 -6.603558103 4.173242519 1.155898211 1.523327079 0.552934886 0.15988893 0.17882142 5.948756188 0.065200976 0.049860969 2.49E-07 6.603558103 0.367428868 AVEYLLTGIPGS(ph)PEPEHGSVQESQVSEQPATEAAGENPLEFLR ddPTM_HeLa_A485_30min_R1 1 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLR 43 0 A0A494C0B4;P54725-2;P54725 A0A494C0B4 RAD23A UV excision repair protein RAD23 homolog A 1 0 AVEYLLTGIPGS(0.969)PEPEHGS(0.029)VQES(0.002)QVSEQPATEAAGENPLEFLR 211.79 2.68E-31 80548000 11248 26048 34035 6503.3 32632 15867 21107 28611 25763 16379 TRUE FALSE FALSE 13750.07879 29094.08701 46625.96281 6858.558812 29383.0435 16697.77158 16597.31702 21594.10739 30933.39779 12296.01673 1.118254724 2.366139185 3.791956682 0.557787043 2.389639193 1.357982178 1.349812495 1.756187216 2.515725089 1 13.58590341 -5.275982633 24.99862506 1.609792624 2.419519295 0.189506863 0.814836877 1376.067415 2365340.571 0.227175083 0.338596331 5.30E-06 5.275982633 0.809726671 AVEYLLTGIPGS(ph)PEPEHGSVQESQVSEQPATEAAGENPLEFLR ddPTM_HeLa_A486_30min_R1 4 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLR 43 0 A0A494C0B4;P54725-2;P54725 A0A494C0B4 RAD23A UV excision repair protein RAD23 homolog A 1 0 AVEYLLTGIPGS(0.999)PEPEHGS(0.001)VQESQVSEQPATEAAGENPLEFLR;AVEYLLTGIPGS(0.999)PEPEHGS(0.001)VQESQVSEQPATEAAGENPLEFLR;AVEYLLTGIPGS(0.99)PEPEHGS(0.01)VQESQVSEQPATEAAGENPLEFLR;AVEYLLTGIPGS(0.995)PEPEHGS(0.005)VQESQVSEQPATEAAGENPLEFLR ;;; 302.1 1.98E-95 552390000 151895 184864 217408 8566.83 231590 110024 137966 137507 174040 59224.7 TRUE FALSE FALSE 141247.9449 170214.7034 301594.2 19944.01318 202541.8227 96450.35752 103445.4475 106199.6579 189125.9273 44394.44963 3.181657754 3.83414379 6.793511407 0.449245646 4.562323092 2.17257694 2.330143709 2.392183229 4.260125509 1 15.4380917 -5.26385575 24.99486606 2.581542638 4.526208155 0.308392097 1.465702853 277.6118332 2871617.529 0.393068021 0.615538521 5.45E-06 5.26385575 1.944665516 AVEYLLTGIPGS(ph)PEPEHGSVQESQVSEQPATEAGENPLEFLR ddPTM_HeLa_A485_30min_R1 3 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLR 42 0 P54725-3 P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 AVEYLLTGIPGS(0.985)PEPEHGS(0.015)VQESQVSEQPATEAGENPLEFLR;AVEYLLTGIPGS(0.984)PEPEHGS(0.016)VQESQVSEQPATEAGENPLEFLR;AVEYLLT(0.001)GIPGS(0.971)PEPEHGS(0.028)VQESQVSEQPATEAGENPLEFLR ;; 251.3 1.91E-53 579843000 54399.4 109964.7 136863 21575 145338.6 73200.7 91690.3 94424.4 100110.8 57233 TRUE FALSE FALSE 66500.35885 122824.1151 187494.319 22753.58762 130868.1787 77033.37546 72099.91836 71266.66785 120202.1193 42965.8664 1.547748584 2.858643975 4.363797004 0.529573578 3.045863837 1.792897058 1.678074351 1.658681037 2.797618886 1 15.39090337 -5.265229053 24.99947102 1.861818498 2.916921213 0.232237956 0.940561082 507.3095816 3346590.669 0.256257132 0.396940461 5.43E-06 5.265229053 1.055102715 AVEYLLTGIPGS(ph)PEPEHGSVQESQVSEQPATEAGENPLEFLR ddPTM_HeLa_A486_30min_R1 3 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLR 42 0 P54725-3 P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 AVEYLLTGIPGS(0.816)PEPEHGS(0.172)VQES(0.011)QVSEQPATEAGENPLEFLR;AVEYLLTGIPGS(0.808)PEPEHGS(0.187)VQES(0.004)QVSEQPATEAGENPLEFLR;AVEYLLTGIPGS(0.999)PEPEHGS(0.001)VQESQVSEQPATEAGENPLEFLR ;; 261.73 7.33E-66 333369000 50420.5 57560.4 67456.1 3011.1 77628.5 32413.7 41253.3 45140.3 55118.7 17398.2 TRUE FALSE FALSE 46886.28332 52999.10427 93576.90846 7009.992973 67891.60967 28414.82725 30931.28801 34862.8391 59896.4333 13041.57748 3.595138963 4.063856874 7.175275278 0.537511124 5.20578203 2.178787597 2.371744374 2.673207222 4.59272917 1 13.67083076 -5.262450007 24.99998198 2.796200309 4.856666893 0.298687696 1.597937789 122.125063 3021048.973 0.426629145 0.676286034 5.46E-06 5.262450007 2.060466584 AVEYLLTGIPGSPEPEHGSVQES(ph)QVSEQPATEAAGENPLEFLR ddPTM_HeLa_A485_30min_R1 1 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLR 43 0 A0A494C0B4;P54725-2;P54725 A0A494C0B4 RAD23A UV excision repair protein RAD23 homolog A 1 0 AVEYLLT(0.009)GIPGS(0.238)PEPEHGS(0.265)VQES(0.414)QVS(0.074)EQPATEAAGENPLEFLR 121.92 1.03E-07 91910000 1038.5 1863.7 2051.9 0 2364 0 693.94 1572.1 1223.6 0 TRUE FALSE FALSE 1269.510742 2081.643503 2810.983197 0 2128.631859 0 545.67405 1186.54001 1469.165296 0 0 AVFPS(ph)IVGRPR ddPTM_HeLa_A485_30min_R1 2 AVFPSIVGRPR 11 1 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 AVFPS(1)IVGRPR;AVFPS(1)IVGRPR ; 135.58 1.12E-05 1508320000 227055 366344 369813 283932 406410 349929 379335 435790 357180 363098 TRUE FALSE FALSE 277562.6014 409184.744 506622.2179 299442.4862 365946.3934 368250.7413 298286.9784 328911.8192 428862.7498 272584.3509 1.018263156 1.501130724 1.858588786 1.098531464 1.342506979 1.350960685 1.094292381 1.206642341 1.573321243 1 18.05634321 AVFPS(ph)IVGRPR ddPTM_HeLa_A486_30min_R1 3 AVFPSIVGRPR 11 1 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 AVFPS(1)IVGRPR;AVFPS(1)IVGRPR;AVFPS(1)IVGRPR ;; 113.99 0.00019953 2573700000 1518406 1596939 1615917 633382 1887045 1447232 1640652 1635114 1322862 1431305 TRUE FALSE FALSE 1411973.58 1470391.738 2241643.338 1474545.305 1650354.22 1268687.23 1230143.517 1262834.236 1437528.743 1072896.912 1.316038442 1.370487436 2.089337115 1.374358794 1.538222547 1.18248754 1.146562641 1.177032222 1.339857285 1 20.03308003 -6.2556842 5.166788197 1.177021093 1.552084208 0.419667673 0.216283278 0.189416973 16.70109836 0.076450611 0.0721891 5.55E-07 6.2556842 0.375063115 AVFPSIVGR ddPTM_HeLa_A485_30min_R1 2 AVFPSIVGR 9 0 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ; ; 195.81 2.54E-11 101635000 91758 142345 281090 103625 208118 109143 120806 101236 195583 157924 FALSE FALSE TRUE 112169.2505 158991.0095 385076.8881 109285.7714 187397.0412 114857.5587 94994.81121 76407.71227 234834.7141 118556.4532 0.946125222 1.341057406 3.248046629 0.921803651 1.580656608 0.968800564 0.801262257 0.64448379 1.980783903 1 16.85521467 AVFPSIVGR ddPTM_HeLa_A486_30min_R1 1 AVFPSIVGR 9 0 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 138.54 0.0067416 325590000 162820 184360 154060 109220 386420 149280 170550 180050 165290 156300 FALSE FALSE TRUE 151407.1588 169750.6422 213716.1579 254269.6797 337951.6004 130863.3514 127876.5861 139056.5455 179617.4703 117161.4627 1.292294884 1.448860729 1.824116506 2.170250131 2.884494549 1.116948768 1.09145604 1.186879562 1.533076373 1 16.83813858 AVFPSIVGRPR ddPTM_HeLa_A485_30min_R1 4 AVFPSIVGRPR 11 1 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 239.36 1.11E-27 3247350000 730766 1087960 1116260 706601 1172230 979240 1129610 1258000 931370 966920 FALSE FALSE TRUE 893322.3756 1215187.458 1529211.025 745200.8234 1055518.665 1030511.492 888259.5954 949473.5275 1118287.416 725884.6388 1.230667144 1.674077936 2.106686026 1.026610543 1.454113517 1.419662901 1.22369251 1.308022621 1.540585592 1 19.46938076 -5.277426516 24.99790815 1.305148126 1.670837192 0.324708673 0.255304041 970.2455927 1517099.522 0.071344231 0.106207671 5.28E-06 5.277426516 0.365689066 AVFPSIVGRPR ddPTM_HeLa_A486_30min_R1 4 AVFPSIVGRPR 11 1 C9JUM1;C9JZR7;C9JTX5;F8WCH0;P60709;A0A2R8Y793;P63267-2;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 219.5 1.57E-20 1579820000 669170 836190 839710 318917 1390150 728490 827800 880890 685520 781770 FALSE FALSE TRUE 622264.6386 769927.259 1164868.2 742454.8932 1215784.424 638616.3105 620675.6844 680330.5767 744941.4256 586009.7035 1.061867465 1.313847287 1.987796777 1.266966893 2.074683093 1.08977088 1.059155984 1.160954456 1.271210052 1 19.16056503 AVFVDLEPTVIDEIR ddPTM_HeLa_A485_30min_R1 2 AVFVDLEPTVIDEIR 15 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 0 0 ; ; 237.49 2.51E-30 46030000 39960 51711 55305 41537 65205 57619 63419 64893 48990 62741 FALSE FALSE TRUE 48848.96414 57758.15162 75764.62093 43806.06113 58712.96125 60635.84174 49869.01256 48977.89 58821.84364 47100.82336 1.037114867 1.226266284 1.608562558 0.930048734 1.246537896 1.28736267 1.058771567 1.039852098 1.248849583 1 15.52346466 -7.54329204 0.414678941 1.011442164 1.24522076 0.09620088 0.17906445 2.495880401 1.210888286 0.225267058 0.159427223 2.86E-08 7.54329204 0.233778596 AVFVDLEPTVIDEIR ddPTM_HeLa_A486_30min_R1 1 AVFVDLEPTVIDEIR 15 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 0 0 215.85 2.21E-22 0 11961 12235 11159 4679.8 14329 10764 14153 12898 10803 13621 FALSE FALSE TRUE 11122.59567 11265.45404 15480.06365 10894.8109 12531.72321 9436.04712 10611.7697 9961.406961 11739.41274 10210.21294 1.089359814 1.103351527 1.51613524 1.067050312 1.227371386 0.924177309 1.039328931 0.975631656 1.149771587 1 13.31772533 -6.247219244 24.46076138 1.017605564 1.205352342 0.330944794 0.129921943 724.9694413 1247055.827 0.042983165 0.042777433 5.66E-07 6.247219244 0.187746778 AVFVDLEPTVIDEVR ddPTM_HeLa_A485_30min_R1 4 AVFVDLEPTVIDEVR 15 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain 0 0 ;;; ;;; 355.67 8.12E-116 728854000 686740 1006340 1001953 657493 1087281 884976 995407 1171123 893299 973397 FALSE FALSE TRUE 839502.9438 1124022.709 1372617.109 693410.1777 979027.486 931311.9749 782730.1627 883903.248 1072575.915 730747.0419 1.148828385 1.538183043 1.878375184 0.948905898 1.339762503 1.27446561 1.071136957 1.209588541 1.46778003 1 19.47901256 -5.27290409 24.99546479 1.201244689 1.52343431 0.325757671 0.219838983 872.7032942 1902673.97 0.061624166 0.092294725 5.33E-06 5.27290409 0.322189622 AVFVDLEPTVIDEVR ddPTM_HeLa_A486_30min_R1 4 AVFVDLEPTVIDEVR 15 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain 0 0 ;;; ;;; 342.26 3.43E-115 594293000 568503 610957 606634 214497 979970 563421 620293 634824 563973 584034 FALSE FALSE TRUE 528653.8755 562542.5423 841538.931 499359.8561 857053.0247 493911.8455 465089.1306 490288.4333 612858.6337 437788.085 1.207556564 1.284965401 1.922251792 1.140642866 1.957689243 1.128198465 1.062361326 1.11992183 1.39989793 1 18.73987316 AVGDGIVLCK ddPTM_HeLa_A485_30min_R1 1 AVGDGIVLCK 10 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;U3KQI3 P13797-3 PLS3 Plastin-3 0 0 124.23 0.0047838 14919000 21519 23164 24427 25359 43857 21602 34446 29073 26552 50212 FALSE FALSE TRUE 26305.82731 25872.8283 33463.56379 26744.29796 39490.44309 22733.04732 27086.3307 21942.80117 31880.74285 37695.07248 0.697858515 0.686371629 0.887743718 0.709490557 1.047628788 0.603077427 0.718564229 0.58211325 0.845753589 1 15.20208833 AVGIWHCGSCMK ddPTM_HeLa_A485_30min_R1 2 AVGIWHCGSCMK 12 0 M0R0A1;C9J4Z3;Q6P4E4;E9PEL3;M0R2L6;P61513 M0R0A1 RPL37A 60S ribosomal protein L37a 0 0 ; ; 170.89 9.19E-07 33069000 31120.5 37987 36917 26394.6 51543 36791 45175 51627 37470 45744 FALSE FALSE TRUE 38043.14786 42429.24921 50574.13454 27836.47016 46411.19794 38717.31987 35522.9922 38965.3973 44989.8853 34340.86266 1.107809907 1.235532422 1.472710079 0.810593212 1.351486083 1.12744168 1.034423409 1.134665652 1.310097704 1 15.06763866 -5.228075363 24.99998811 1.123088946 1.268368848 0.163295295 0.166303761 1302.797092 976197.523 0.043760829 0.075790247 5.91E-06 5.228075363 0.145279902 AVGK(ac)VIPELNGK ddPTM_HeLa_A485_30min_R1 1 AVGKVIPELNGK 12 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 AVGK(1)VIPELNGK 174.1 1.59E-06 28108000 28412 28270 29289 31673 37478 37865 42577 50487 28097 46358 FALSE TRUE FALSE 34732.15138 31575.93058 40124.21992 33403.21579 33746.55873 39847.55285 33480.07613 38104.98409 33735.81018 34801.80376 0.997998599 0.9073073 1.152935066 0.959812774 0.969678439 1.144985275 0.96202129 1.094914056 0.969369588 1 15.08687446 AVGMPSPVS(ph)PK ddPTM_HeLa_A485_30min_R1 2 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 AVGMPS(0.009)PVS(0.991)PK;AVGMPSPVS(1)PK ; 149.02 7.19E-07 1040260000 685160 612360 503880 1044160 838580 693940 1154150 991900 556510 1372200 TRUE FALSE FALSE 837571.4782 683970.1752 690286.1802 1101199.817 755088.0308 730273.6254 907556.424 748634.9698 668196.4524 1030135.793 0.813068999 0.663961178 0.670092414 1.068985103 0.732998538 0.708910058 0.881006591 0.726734256 0.648648903 1 19.9744031 -11.36710312 2.220069493 2.49916912 0.770467833 0.247880311 0.121041699 3997902.645 517891.7312 30100446.26 0.03316392 4.29E-12 11.36710312 -1.728701287 AVGMPSPVS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 AVGMPS(0.031)PVS(0.969)PK;AVGMPS(0.003)PVS(0.997)PK;AVGMPS(0.002)PVS(0.998)PK ;; 116.51 0.00037022 762810000 1078030 1005340 612690 629610 851470 1173750 1444400 1340250 830660 1919880 TRUE FALSE FALSE 1002465.664 925673.197 849939.9764 1465763.899 744670.693 1028944.659 1082995.843 1035104.332 902662.2776 1439129.552 0.696577777 0.64321742 0.590593095 1.018507262 0.51744521 0.71497709 0.752535337 0.719257228 0.627227949 1 20.45676504 -11.07397372 2.5188894 1.460961011 0.699927875 0.341170075 0.12594724 11562864.22 3348124.185 30668010.04 0.030716136 8.43E-12 11.07397372 -0.761033135 AVGPAS(ph)ILK ddPTM_HeLa_A485_30min_R1 1 AVGPASILK 9 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 AVGPAS(1)ILK 58.699 0.034402 59850000 134310 109620 96185 149330 139640 130430 201920 182810 105440 193160 TRUE FALSE FALSE 164186.7961 122439.1054 131767.8341 157487.5198 125736.9513 137259.1131 158778.1425 137975.5609 126600.8408 145008.7668 1.132254275 0.844356573 0.908688743 1.086055162 0.867098963 0.946557343 1.09495547 0.951498064 0.873056461 1 17.1457806 AVGPAS(ph)ILK ddPTM_HeLa_A486_30min_R1 1 AVGPASILK 9 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 AVGPAS(1)ILK 136.48 0.00017623 62014000 131470 142230 85845 61938 125590 154720 169180 169230 114820 173260 TRUE FALSE FALSE 122254.6319 130959.1768 119086.483 144194.7942 109837.3311 135632.2195 126849.3746 130700.0233 124772.69 129874.5683 0.941328495 1.0083512 0.916934582 1.110261971 0.845718547 1.044332399 0.976706805 1.006355786 0.96071688 1 16.98675943 AVGS(ph)PLCVPAR ddPTM_HeLa_A485_30min_R1 5 AVGSPLCVPAR 11 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 AVGS(1)PLCVPAR;AVGS(1)PLCVPAR;AVGS(1)PLCVPAR;AVGS(1)PLCVPAR;AVGS(1)PLCVPAR ;;;; 142.1 1.12E-06 2258440000 1115160 1211550 1294200 1335920 1715500 1192390 1403100 1534910 1231960 1509880 TRUE FALSE FALSE 1363223.495 1353230.233 1772978.436 1408897.927 1544698.797 1254821.697 1103316.223 1158470.916 1479203.072 1133494.703 1.202673017 1.193856689 1.564170023 1.242968249 1.362775487 1.107037989 0.97337572 1.022034697 1.304993369 1 20.11234622 -6.327106311 5.501820504 1.073302563 1.316544188 0.442905701 0.130058826 0.21232292 12.69268505 0.046890978 0.041442849 4.71E-07 6.327106311 0.243241625 AVGS(ph)PLCVPAR ddPTM_HeLa_A486_30min_R1 5 AVGSPLCVPAR 11 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 AVGS(1)PLCVPAR;AVGS(1)PLCVPAR;AVGS(1)PLCVPAR;AVGS(1)PLCVPAR;AVGS(1)PLCVPAR ;;;; 174.42 1.73E-08 2470120000 1905490 2380320 2019810 833108 2596150 2074230 2302010 2403140 1774000 2135020 TRUE FALSE FALSE 1771924.991 2191694.774 2801934.524 1939517.527 2270516.659 1818332.592 1726022.75 1855997.482 1927771.748 1600397.095 1.107178335 1.369469353 1.750774562 1.21189768 1.418720807 1.136175889 1.078496552 1.159710604 1.20455839 1 20.60999848 -6.268990369 21.35255489 1.12343932 1.383681332 0.378064167 0.163543869 89.2022774 252241.5388 0.058009651 0.052367747 5.38E-07 6.268990369 0.260242012 AVHS(ph)PIR ddPTM_HeLa_A485_30min_R1 8 AVHSPIR 7 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR ;;;;;;; 126.07 0.00076682 4107845000 1275801 1774096 1734610 1292939 2031680 1521557 1798263 2029732 1604472 1729573 TRUE FALSE FALSE 1559598.531 1981561.095 2376314.422 1363568.984 1829398.806 1601223.372 1414049.42 1531937.045 1926474.813 1298422.282 1.201148928 1.526129922 1.830155302 1.05017374 1.408939781 1.233206942 1.089052029 1.179845006 1.48370437 1 20.30832823 -5.279208406 24.99862961 1.218575396 1.519843289 0.338650236 0.199763857 930.1422749 1308582.945 0.055931117 0.083157248 5.26E-06 5.279208406 0.301267893 AVHS(ph)PIR ddPTM_HeLa_A486_30min_R1 5 AVHSPIR 7 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR;AVHS(1)PIR ;;;; 126.07 0.0012748 3211371000 1045690 1163153 1137501 405831.1 1374917 1109073 1165539 1153927 993402 1093847 TRUE FALSE FALSE 972392.5309 1070980.52 1577971.851 944795.3104 1202462.089 972246.8495 873908.8144 891203.0121 1079510.885 819940.5915 1.18593047 1.306168436 1.924495344 1.152272884 1.466523431 1.185752797 1.065819675 1.086911688 1.316572074 1 19.64515986 -6.365068728 4.231240974 1.124663632 1.416093585 0.297955856 0.213057355 0.310342064 9.552724669 0.078187901 0.068449684 4.31E-07 6.365068728 0.291429953 AVIFCLSADKK ddPTM_HeLa_A485_30min_R1 2 AVIFCLSADKK 11 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 0 ; ; 158.05 8.03E-06 171171000 162045 108620 91681 213790 189073 157211 225120 237960 97757 264120 FALSE FALSE TRUE 198091.3512 121322.1641 125597.6171 225468.8064 170248.2282 165442.3249 177021.2729 179599.9369 117375.9332 198279.7448 0.99904986 0.611873715 0.633436447 1.137124756 0.858626424 0.83438843 0.892785459 0.90579064 0.591971375 1 17.59717778 -11.49571799 2.317143594 3.374367764 0.831446103 0.086428632 0.166233428 17661739.76 1268278.137 224970738.6 0.043718485 3.19E-12 11.49571799 -2.542921661 AVIFCLSADKK ddPTM_HeLa_A486_30min_R1 2 AVIFCLSADKK 11 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 0 ; ; 169.58 2.50E-06 162738000 137825 184946 117145 98177 207870 219037 306740 263490 175467 275060 FALSE FALSE TRUE 128164.1792 170290.2054 162506.6813 228561.0176 181797.0063 192014.4419 229990.4076 203499.0789 190676.6208 206183.1857 0.621603449 0.825917035 0.788166507 1.108533738 0.881725664 0.931280799 1.11546636 0.986981932 0.924792292 1 17.65356716 -4.32303821 0.905936565 0.993522376 0.455133575 0.656658574 0.083176878 1.22545513 0.848726338 0.029250175 0.64256367 4.75E-05 4.32303821 -0.5383888 AVIVSS(ph)PK ddPTM_HeLa_A485_30min_R1 3 AVIVSSPK 8 0 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 1 0 AVIVS(0.012)S(0.988)PK;AVIVS(0.017)S(0.983)PK;AVIVS(0.003)S(0.997)PK ;; 53.751 0.034525 180588000 509690 787630 665210 141146 956170 730130 614920 785010 685180 237220 TRUE FALSE FALSE 623068.7821 879736.477 911298.8607 148856.4486 860970.3575 768358.4778 483537.3186 592485.0667 822689.3412 178085.4197 3.498707435 4.939969136 5.117200848 0.83587106 4.834592068 4.31455017 2.715198804 3.326971223 4.619633334 1 17.44220988 -10.8338255 2.706149286 0.01136284 3.785071636 0.315306597 1.237778772 98812852.01 93861707.76 644333217.7 0.326308628 1.47E-11 10.8338255 3.773708797 AVIVSS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AVIVSSPK 8 0 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 1 0 AVIVS(0.115)S(0.885)PK;AVIVSS(1)PK;AVIVS(0.104)S(0.896)PK ;; 200.56 1.88E-06 1111812000 3410950 3080940 1774180 1601720.7 2784730 3034470 3963570 3500370 2613090 4945167 TRUE FALSE FALSE 3171860.019 2836795.094 2461190.01 3728886.736 2435443.197 2660107.944 2971842.864 2703412.164 2839594.745 3706864.996 0.855671847 0.76528147 0.663954585 1.005940799 0.657008874 0.717616624 0.801713272 0.729298792 0.766036731 1 21.82176814 -10.03533618 6.262942542 1.000000208 0.771423041 0.332790959 0.096119885 2.69E-07 4.14E-08 0.08968048 0.021750692 9.22E-11 10.03533618 -0.228577166 AVLFCLS(ph)EDKK ddPTM_HeLa_A486_30min_R1 1 AVLFCLSEDKK 11 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 AVLFCLS(1)EDKK 128.95 2.83E-05 172710000 112190 103180 49605 134940 105830 152680 219670 194260 82762 312220 TRUE FALSE FALSE 104326.0603 95003.64102 68813.38447 314147.1395 92555.81457 133843.8939 164706.2426 150031.2387 89935.8768 234038.0798 0.445765324 0.405932407 0.294026444 1.342290707 0.395473312 0.571889387 0.703758306 0.641054818 0.384278819 1 17.83638376 -11.52434456 2.212365822 6.993207105 0.585524537 0.166914654 0.283429049 9091974.144 524946.3038 275018332.9 0.070997562 2.99E-12 11.52434456 -6.407682568 AVLFCLSEDK(ac)K ddPTM_HeLa_A485_30min_R1 1 AVLFCLSEDKK 11 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 1 AVLFCLSEDK(1)K 171.85 6.06E-06 33239000 13829 10962 16163 20102 18267 13209 25272 21469 12544 40690 FALSE TRUE FALSE 16905.21334 12243.91054 22142.3663 21200.12136 16448.27334 13900.60282 19872.43075 16203.69409 15061.46574 30546.73184 0.553421342 0.400825548 0.724868585 0.694022571 0.538462623 0.45506023 0.650558326 0.530455899 0.493063082 1 14.89873042 -10.98768618 3.258960439 1.399111652 0.562249071 0.645584439 0.097773268 2681290.334 42708878.88 7547040.383 0.024563184 1.03E-11 10.98768618 -0.836862582 AVLFCLSEDK(ac)K ddPTM_HeLa_A486_30min_R1 2 AVLFCLSEDKK 11 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 1 ; AVLFCLSEDK(1)K;AVLFCLSEDK(1)K 255.07 1.84E-35 74681000 61835 71531 70760 35436 74775 84821 128390 103548 64486 164705 FALSE TRUE FALSE 57500.68582 65862.62305 98160.16702 82496.79884 65396.02225 74356.64742 96265.46403 79972.38084 70075.6984 123461.796 0.465736671 0.533465616 0.795065115 0.668196977 0.529686303 0.602264424 0.779718643 0.64775002 0.567590143 1 16.91370516 -14 0.264330383 3.447171947 0.599295838 0.560660092 0.100737774 163.3648855 1.600163965 217.7468803 0.138185994 1.00E-14 14 -2.847876109 AVLFCLSEDKK ddPTM_HeLa_A485_30min_R1 4 AVLFCLSEDKK 11 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ;;; ;;; 166.14 2.73E-06 592440000 634520 498719 367739 1033330 771660 711140 1135650 1033760 582210 1419630 FALSE FALSE TRUE 775666.7849 557039.8488 503780.959 1089778.201 694830.8209 748374.1908 893009.1001 780228.7391 699054.2067 1065742.367 0.727818288 0.522677775 0.472704262 1.022553137 0.651968846 0.70220929 0.837922116 0.732098829 0.655931704 1 20.02342729 -14 0.093713046 1.877948433 0.491208099 0.282820192 0.144615031 276.930486 1.786396152 49.08539927 3.090641278 1.00E-14 14 -1.386740334 AVLFCLSEDKK ddPTM_HeLa_A486_30min_R1 4 AVLFCLSEDKK 11 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ;;; ;;; 169.52 5.11E-07 1384860000 935070 1020740 500281 594339 1194320 1319200 1673750 1498680 858850 1693060 FALSE FALSE TRUE 869526.4217 939852.8449 694003.2012 1383651.228 1044517.249 1156450.517 1254960.047 1157463.28 933295.8095 1269106.756 0.685148367 0.740562479 0.546843832 1.090255979 0.8230334 0.911231865 0.988853019 0.912029878 0.735395825 1 20.275382 -5.253880984 24.99847664 0.917397837 0.665822653 0.586520038 0.101990509 421.7749938 1394966.456 0.02712304 0.045828683 5.57E-06 5.253880984 -0.251575184 AVLHTDSSLPFS(ph)FPDELPNSCLLAALSDR ddPTM_HeLa_A486_30min_R1 1 AVLHTDSSLPFSFPDELPNSCLLAALSDR 29 0 Q8NCE2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 0 AVLHTDSSLPFS(1)FPDELPNSCLLAALSDR 226.07 8.22E-39 119610000 25909 27691 36538 9444.8 45577 29552 34342 32384 33795 19748 TRUE FALSE FALSE 24092.91289 25496.66431 50686.49212 21987.97171 39860.30767 25906.1747 25749.26837 25010.87014 36724.37781 14802.97226 1.627572657 1.722401681 3.424075329 1.485375459 2.692723256 1.750065747 1.739466096 1.689584341 2.480878648 1 13.85359926 -6.392027565 17.88851031 1.775355924 2.196723216 0.11637487 0.625752526 5.399711136 738.197589 0.214506882 0.189175368 4.05E-07 6.392027565 0.421367292 AVLHVALR ddPTM_HeLa_A485_30min_R1 2 AVLHVALR 8 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41;K7ELR7;A0A2R8YF08;CON__Q3ZBD7 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 168.74 2.38E-05 656640000 290550 384930 403920 280670 423080 359050 417490 482400 304370 383560 FALSE FALSE TRUE 355181.8451 429944.2151 553346.8165 296002.2914 380956.6697 377849.3028 328289.8509 364090.6436 365454.2672 287945.5509 1.233503501 1.493144151 1.92170643 1.027980083 1.323016343 1.312224834 1.140110864 1.264442678 1.269178378 1 18.13543651 -5.284785465 24.99536455 1.210443935 1.543820768 0.430320727 0.188038985 759.141452 812769.1412 0.052779039 0.078336811 5.19E-06 5.284785465 0.333376834 AVLHVALR ddPTM_HeLa_A486_30min_R1 2 AVLHVALR 8 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41;K7ELR7;A0A2R8YF08;CON__Q3ZBD7 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 164.53 3.97E-05 504160000 440280 477200 444720 130353 523460 407630 500800 484930 388620 453400 FALSE FALSE TRUE 409418.6456 439384.9341 616927.494 303468.3717 457802.7657 357340.7551 375494.5431 374522.0249 422305.8945 339865.6889 1.204648363 1.292819336 1.815209697 0.892906762 1.347010836 1.051417565 1.10483216 1.101970682 1.242567015 1 18.3746052 -5.282815372 24.99749639 1.117806114 1.423085277 0.392064144 0.188634628 837.0261867 978832.5851 0.051882665 0.077033268 5.21E-06 5.282815372 0.305279163 AVLIAS(ph)TRSPISFLSK ddPTM_HeLa_A485_30min_R1 1 AVLIASTRSPISFLSK 16 1 Q7RTP6;J3KSK6;A0A5F9ZHV5;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 AVLIAS(0.386)T(0.386)RS(0.227)PIS(0.001)FLSK 93.269 0.00042748 53116000 32724 65857 51018 39399 101070 75007 89611 126250 64274 63087 TRUE FALSE FALSE 40003.3409 73558.40327 69891.68124 41551.26761 91007.11592 78934.25054 70464.8778 95286.98955 77173.20224 47360.57193 0.844654937 1.553156988 1.475735583 0.877338806 1.921579749 1.666665906 1.487838405 2.011947611 1.629482059 1 15.53139888 -5.769760575 24.99982096 1.665949628 1.234396516 0.279007974 0.331790048 234.8814342 705665.5077 0.098559711 0.11359285 1.70E-06 5.769760575 -0.431553112 AVLIAS(ph)TRSPISFLSK ddPTM_HeLa_A486_30min_R1 1 AVLIASTRSPISFLSK 16 1 Q7RTP6;J3KSK6;A0A5F9ZHV5;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 AVLIAS(0.357)T(0.303)RS(0.338)PIS(0.002)FLSK 95.094 0.00037928 50031000 94877 75146 102590 60988 190360 103220 142570 181880 78994 109200 TRUE FALSE FALSE 88226.61225 69191.15728 142315.5955 141983.1462 166483.2738 90485.76586 106897.478 140469.8944 85841.26352 81855.60923 1.077832211 0.845283029 1.73861751 1.734556098 2.033865185 1.105431463 1.30592734 1.716069256 1.048691279 1 16.32079366 -7.867713742 7.905800822 1.005497999 1.447401878 0.188463171 0.349284163 0.444629791 29.0520851 0.361686223 0.093595255 1.36E-08 7.867713742 0.441903879 AVLPVTCHRDS(ph)FSR ddPTM_HeLa_A485_30min_R1 4 AVLPVTCHRDSFSR 14 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 AVLPVTCHRDS(0.969)FS(0.031)R;AVLPVTCHRDS(0.92)FS(0.08)R;AVLPVTCHRDS(0.916)FS(0.084)R;AVLPVTCHRDS(0.986)FS(0.014)R ;;; 199.08 1.47E-16 1919860000 590130 660636 629872 486838 885510 662240 829330 955230 679600 735890 TRUE FALSE FALSE 721402.3826 737891.6334 862887.864 513432.7272 797345.5152 696913.8624 652136.8705 720958.3448 815989.4863 552446.1661 1.305832906 1.335680612 1.56194018 0.92938056 1.443299934 1.261505474 1.180453247 1.30502914 1.477047967 1 19.07547436 -10.17616229 3.818284499 0.999794303 1.306405859 0.240801438 0.16554272 108819927.9 183598804.3 285576.0619 0.039836796 6.67E-11 10.17616229 0.306611556 AVLPVTCHRDS(ph)FSR ddPTM_HeLa_A486_30min_R1 5 AVLPVTCHRDSFSR 14 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 AVLPVTCHRDS(0.671)FS(0.329)R;AVLPVTCHRDS(0.929)FS(0.071)R;AVLPVTCHRDS(0.975)FS(0.025)R;AVLPVTCHRDS(0.903)FS(0.097)R;AVLPVTCHRDS(0.968)FS(0.032)R ;;;; 139.08 2.09E-06 2863010000 782880 905110 777230 213538 952130 771970 878240 949380 648882 749793 TRUE FALSE FALSE 728004.1548 833385.7872 1078194.271 497127.2556 832704.9771 676732.1902 658495.0629 733226.8988 705127.6142 562039.9525 1.295288977 1.482787449 1.918358768 0.884505191 1.481576129 1.204064208 1.17161611 1.304581455 1.254586282 1 19.10031316 -5.264926757 24.99730181 1.211026096 1.557209291 0.403163648 0.210039732 318.1208494 2280272.485 0.05709354 0.088683402 5.43E-06 5.264926757 0.346183195 AVLSAEQLRDEEVHAGLGELLR ddPTM_HeLa_A485_30min_R1 1 AVLSAEQLRDEEVHAGLGELLR 22 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PQ34 P50454 SERPINH1 Serpin H1 0 0 101.74 0.0015984 66137000 17020 21233 39119 34195 82021 37614 56375 69791 46044 62386 FALSE FALSE TRUE 20806.04028 23716.01465 53590.74598 36062.98626 73854.70125 39583.41088 44330.02071 52674.64782 55284.60846 46834.31833 0.444247744 0.506381122 1.144262325 0.770011982 1.576935544 0.84517961 0.946528578 1.124701922 1.180429446 1 15.51527845 -4.754847827 22.94195421 1.072410962 0.475313299 0.565325453 0.209811646 37.46173555 130375.2055 0.052109045 0.130541527 1.76E-05 4.754847827 -0.597097664 AVLSAEQLRDEEVHAGLGELLR ddPTM_HeLa_A486_30min_R1 1 AVLSAEQLRDEEVHAGLGELLR 22 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PQ34 P50454 SERPINH1 Serpin H1 0 0 70.453 0.023743 88735000 15740 28802 33681 14420 60648 31342 39256 42854 27342 26260 FALSE FALSE TRUE 14636.70728 26519.62462 46723.18521 33570.48875 53040.96232 27475.3427 29433.73359 33097.0797 29712.02657 19684.32508 0.743571711 1.347245817 2.373623938 1.705442712 2.694578662 1.395798057 1.495287925 1.68139266 1.509425721 1 14.26475963 AVLSDS(ph)PQLSEGK ddPTM_HeLa_A485_30min_R1 4 AVLSDSPQLSEGK 13 0 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9;Q7Z4H7-2 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 AVLSDS(1)PQLSEGK;AVLSDS(1)PQLSEGK;AVLSDS(1)PQLSEGK;AVLS(0.002)DS(0.998)PQLSEGK ;;; 291.13 1.73E-57 1626830000 2033280 2186120 1745000 2558720 2856650 2286470 3049640 3281440 2062620 3442140 TRUE FALSE FALSE 2485576.121 2441767.717 2390548.116 2698496.395 2572231.896 2406186.034 2398059.501 2476661.695 2476568.915 2584077.846 0.961881286 0.94492808 0.92510685 1.04427829 0.995415792 0.931158493 0.928013645 0.958431534 0.95839563 1 21.3012181 -11.01877132 0.002099948 1.887722505 0.059308848 0.031059334 0.035543911 1219637.31 353.0522602 156389.2632 151047.0968 9.58E-12 11.01877132 -1.828413657 AVLSDS(ph)PQLSEGK ddPTM_HeLa_A486_30min_R1 3 AVLSDSPQLSEGK 13 0 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9;Q7Z4H7-2 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 AVLSDS(1)PQLSEGK;AVLSDS(1)PQLSEGK;AVLSDS(1)PQLSEGK ;; 285.75 3.96E-49 1332400000 2030400 2121710 1402010 836750 2249310 2154720 2583950 2465960 1641190 2458750 TRUE FALSE FALSE 1888079.445 1953577.972 1944905.819 1947996.287 1967180.566 1888892.554 1937418.38 1904514.74 1783449.671 1843062.996 1.024424802 1.059962669 1.055257375 1.056934186 1.067343097 1.024865975 1.051194877 1.033342183 0.967655297 1 20.81367395 -7.631916906 4.754387884 0.98463618 1.048964809 0.736784505 0.015212819 0.100754584 3.673812812 0.011039537 0.003846921 2.33E-08 7.631916906 0.064328629 AVLTS(ph)QK ddPTM_HeLa_A485_30min_R1 1 AVLTSQK 7 0 P38398;P38398-4;P38398-8;P38398-5;H0Y8B8;B7ZA85;E7EUM2;H0Y881 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 AVLT(0.181)S(0.819)QK 104.2 0.0027481 0 481560 529010 369850 622670 545140 526150 709150 672530 409780 817140 TRUE FALSE FALSE 588681.3606 590873.1177 506672.9057 656684.8854 490863.9475 553698.4004 557634.3093 507590.963 492019.0873 613442.0363 0.959636487 0.963209371 0.825950743 1.070492152 0.800179835 0.902609159 0.909025264 0.82744731 0.802062881 1 19.22656751 -5.793057233 24.99983277 0.8681528 0.946216549 0.200662921 0.078271218 324.690867 256727.2767 0.0233523 0.026481402 1.61E-06 5.793057233 0.078063749 AVLTS(ph)QK ddPTM_HeLa_A486_30min_R1 2 AVLTSQK 7 0 P38398;P38398-4;P38398-8;P38398-5;H0Y8B8;B7ZA85;E7EUM2;H0Y881 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 AVLT(0.28)S(0.72)QK;AVLT(0.039)S(0.961)QK ; 116.05 0.002447 235500000 1122700 1117580 601160 434970 958720 1129770 1287610 1250630 892310 1667730 TRUE FALSE FALSE 1044004.528 1029018.891 833945.2516 1012632.142 838468.3979 990390.4641 965436.3591 965888.8501 969656.1493 1250119.553 0.835123749 0.823136386 0.667092399 0.810028241 0.67071057 0.7922366 0.772275225 0.772637183 0.775650734 1 20.25363464 -9.394980312 0.861280617 1.009762237 0.764340045 0.619208381 0.054416239 11.52503867 6.083329882 0.445624215 0.017446181 4.03E-10 9.394980312 -0.245422192 AVLVDLEPGTMDSVR ddPTM_HeLa_A485_30min_R1 3 AVLVDLEPGTMDSVR 15 0 P68371;M0QY85;M0R0X0;M0QY37;M0QX14;M0QZL7;M0R278;A0A075B724;Q3ZCM7;P04350 P68371;Q3ZCM7;P04350 TUBB4B;TUBB4A;TUBB8 Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain 0 0 ;; ;; 359.83 1.22E-118 77626000 86571 98132 118347 101059 141030 98554 120509 121952 106981 146277 FALSE FALSE TRUE 105828.4203 109607.6838 162128.4801 106579.5973 126988.558 103714.135 94761.26768 92043.08079 128451.1054 109812.8359 0.963716303 0.998131802 1.476407369 0.970556824 1.156409057 0.944462769 0.862934345 0.838181439 1.169727604 1 16.74468717 -6.26909087 23.55579456 0.946689618 1.118931114 0.173177489 0.161639966 441.6560784 1359671.054 0.056792411 0.051123181 5.38E-07 6.26909087 0.172241496 AVLWQDSFS(ph)PHLK ddPTM_HeLa_A485_30min_R1 2 AVLWQDSFSPHLK 13 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 AVLWQDSFS(1)PHLK;AVLWQDSFS(1)PHLK ; 160.45 7.18E-12 328337000 293410 256720 242240 307420 408680 300560 341030 315830 280910 453040 TRUE FALSE FALSE 358678.0422 286741.1708 331854.6564 324213.5762 367990.3842 316296.8568 268166.1545 238372.1973 337286.0603 340105.4656 1.054608286 0.843094863 0.975740439 0.953273643 1.081989034 0.929996395 0.788479403 0.700877291 0.991710203 1 18.37562267 -6.560995497 7.585340604 0.846684352 0.975469537 0.193726786 0.102382839 0.302311599 49.44117213 0.038407507 0.029836181 2.75E-07 6.560995497 0.128785185 AVLWQDSFS(ph)PHLK ddPTM_HeLa_A486_30min_R1 1 AVLWQDSFSPHLK 13 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 AVLWQDS(0.001)FS(0.999)PHLK 152.94 3.22E-08 76873000 116850 124440 95258 47677 146410 124650 139340 146730 105260 146360 TRUE FALSE FALSE 108659.4184 114578.9212 132144.4487 110994.4655 128045.8926 109271.9503 104475.6582 113322.7821 114384.0216 109710.5034 0.990419468 1.04437513 1.204483114 1.011703183 1.167125195 0.996002634 0.952284923 1.032925551 1.04259864 1 16.74334213 -6.320540159 24.99986872 1.003540286 1.084160201 0.2697342 0.064858701 359.1351232 151914.4573 0.02279022 0.02009909 4.78E-07 6.320540159 0.080619915 AVNTQALS(ph)GAGILR ddPTM_HeLa_A486_30min_R1 3 AVNTQALSGAGILR 14 0 O60749;O60749-2 O60749 SNX2 Sorting nexin-2 1 0 AVNTQALS(1)GAGILR;AVNTQALS(1)GAGILR;AVNT(0.051)QALS(0.949)GAGILR ;; 137.52 7.10E-06 449520000 320969 376193 333445 134277 423472 316842 394798 374959 306615 326132 TRUE FALSE FALSE 298470.7306 346382.0966 462563.834 312603.642 370356.193 277753.2555 296015.3647 289589.021 333192.6351 244466.4244 1.220906843 1.416890264 1.892136456 1.278718101 1.514957295 1.136161156 1.210863068 1.184575844 1.362938227 1 17.89927681 -6.259369236 24.92852766 1.192440858 1.475476213 0.365597318 0.187560028 209.6289222 2524342.946 0.063869476 0.060911608 5.50E-07 6.259369236 0.283035355 AVPALGKS(ph)PPHHSGFQQYQQADASK ddPTM_HeLa_A486_30min_R1 1 AVPALGKSPPHHSGFQQYQQADASK 25 1 Q92540;Q92540-5;B1ALB4;E9PD50;Q92540-2;Q92540-4 Q92540 SMG7 Protein SMG7 1 0 AVPALGKS(0.496)PPHHS(0.458)GFQQY(0.047)QQADASK 76.765 0.0046903 265660000 219830 237910 182110 30686 279370 192250 227280 219770 191090 94322 TRUE FALSE FALSE 204421.0522 219057.1451 252627.8691 71438.55878 244328.8096 168532.1497 170412.1401 169733.1685 207653.8351 70703.15727 2.891257761 3.09826539 3.573077623 1.010401254 3.455698713 2.383658045 2.410247953 2.400644824 2.936981078 1 16.10948702 -10.3794898 0.319421568 3.25E-21 2.817531869 0.347929552 0.688261467 23.81798527 1.604415298 22.06947043 0.654823553 4.17E-11 10.3794898 2.817531869 AVPIAVADEGES(ph)ESEDDDLKPR ddPTM_HeLa_A485_30min_R1 4 AVPIAVADEGESESEDDDLKPR 22 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 AVPIAVADEGES(0.5)ES(0.5)EDDDLKPR;AVPIAVADEGES(0.996)ES(0.004)EDDDLKPR;AVPIAVADEGES(0.999)ES(0.001)EDDDLKPR;AVPIAVADEGES(1)ESEDDDLKPR ;;; 195.09 1.12E-20 1034340000 270165 277883 223373 368403 331479 295196 445274 413166 221155 488064 TRUE FALSE FALSE 330262.2722 310378.9996 306007.968 388527.923 298475.7869 310652.0061 350137.5723 311836.3907 265538.7799 366398.627 0.901374208 0.847107431 0.835177715 1.060396777 0.814620375 0.847852539 0.955619226 0.851085042 0.72472646 1 18.48305457 -7.502705234 24.21992082 0.837544093 0.892796572 0.017958319 0.092069943 1456.634689 1748821.631 0.049548739 0.023287185 3.14E-08 7.502705234 0.055252479 AVPIAVADEGES(ph)ESEDDDLKPR ddPTM_HeLa_A486_30min_R1 4 AVPIAVADEGESESEDDDLKPR 22 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 AVPIAVADEGES(0.999)ES(0.001)EDDDLKPR;AVPIAVADEGES(0.993)ES(0.007)EDDDLKPR;AVPIAVADEGES(0.998)ES(0.002)EDDDLKPR;AVPIAVADEGES(1)ESEDDDLKPR ;;; 190.5 3.93E-20 1067190000 447804 383986 271447 214257 398535 458070 583892 542429 338512 621960 TRUE FALSE FALSE 416415.2521 353557.5509 376558.548 498801.1239 348547.0241 401557.9807 437796.0458 418929.7578 367854.4927 466217.1677 0.893178718 0.758353779 0.80768915 1.069890082 0.747606584 0.861311012 0.939038877 0.898572139 0.78901962 1 18.8306426 -11.35555431 2.270236976 1.872630399 0.864012989 0.168542267 0.091420589 8455664.674 990955.328 37968175.48 0.022969977 4.41E-12 11.35555431 -1.008617411 AVPIGT(ph)PPK ddPTM_HeLa_A485_30min_R1 4 AVPIGTPPK 9 0 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK ;;; 105.17 0.005678 1673360000 4928770 3735050 3373520 7295000 4684000 3664560 5129170 3964870 3810890 8842200 TRUE FALSE FALSE 6025157.882 4171831.607 4621525.432 7693507.378 4217644.513 3856430.695 4033280.928 2992479.416 4575700.667 6638002.269 0.907676382 0.628476978 0.696222334 1.159009453 0.635378589 0.580962546 0.607604632 0.450810243 0.689318937 1 22.66231769 -5.948029584 24.99981678 0.62559931 0.83082786 0.177781242 0.187023238 155.8161515 74952.81235 0.057011035 0.064644429 1.13E-06 5.948029584 0.205228549 AVPIGT(ph)PPK ddPTM_HeLa_A486_30min_R1 3 AVPIGTPPK 9 0 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 AVPIGT(1)PPK;AVPIGT(1)PPK;AVPIGT(1)PPK ;; 100.92 0.0086165 1710510000 5196200 5540400 2754160 2039280 4127400 5626400 5951200 5550400 4110100 7155700 TRUE FALSE FALSE 4831973.213 5101358.526 3820644.511 4747546.9 3609703.006 4932271.973 4462146.815 4286695.084 4466366.777 5363866.144 0.900837769 0.951059998 0.712293038 0.885097945 0.672966645 0.919536737 0.831890039 0.799180101 0.832676778 1 22.3548418 -9.185662449 11.14191852 1.000003037 0.832018872 0.261204669 0.083722348 0 0 0.078628614 0.01907024 6.52E-10 9.185662449 -0.167984164 AVPLALALISVSNPR ddPTM_HeLa_A485_30min_R1 2 AVPLALALISVSNPR 15 0 Q13200;Q13200-2;Q13200-3;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ; ; 203.83 1.10E-15 16129500 6223.3 7080.6 7430.9 6315.6 10237.8 7157.8 8733.8 8661.5 6024.6 9034 FALSE FALSE TRUE 7607.651615 7908.614577 10179.89914 6660.605236 9218.488685 7532.57134 6867.752281 6537.253544 7233.681959 6781.990058 1.121743257 1.166120049 1.501019472 0.982101887 1.359260129 1.110672719 1.012645584 0.963913761 1.066601675 1 12.72749295 -6.542447731 4.278119143 1.010612889 1.226002234 0.372088891 0.131665421 0.222501014 9.659935697 0.049447967 0.039176237 2.87E-07 6.542447731 0.215389345 AVPLALALISVSNPR ddPTM_HeLa_A486_30min_R1 1 AVPLALALISVSNPR 15 0 Q13200;Q13200-2;Q13200-3;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 186.02 7.25E-11 7872000 5354.6 5721.2 6072 1633.6 6561.1 5693.3 6847 5792.3 5422.2 6753.7 FALSE FALSE TRUE 4979.270191 5267.831276 8423.241014 3803.103358 5738.145658 4990.918531 5133.80818 4473.519735 5892.200662 5062.529561 0.983553801 1.040553188 1.663840361 0.751225906 1.133454252 0.985854694 1.014079645 0.883653059 1.163884693 1 12.30564271 -5.334126833 24.99999988 0.992229522 1.210499451 0.226579698 0.201436345 222.8518784 76646.28345 0.055548919 0.08239237 4.63E-06 5.334126833 0.218269929 AVPMAPAPAS(ph)PGSSNDSSAR ddPTM_HeLa_A485_30min_R1 9 AVPMAPAPASPGSSNDSSAR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.995)PGS(0.005)S(0.001)NDSSAR;AVPMAPAPAS(0.997)PGS(0.003)SNDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.966)PGS(0.03)S(0.004)NDSSAR;AVPMAPAPAS(0.956)PGS(0.022)S(0.022)NDSSAR;AVPMAPAPAS(1)PGSSNDSSAR ;;;;;;;; 361.35 1.86E-128 7100520000 1122176 1577777 1563220 1249353 1736445 1305429 1588939 1724189 1428039 1680535 TRUE FALSE FALSE 1371800.18 1762284.295 2141520.129 1317601.991 1563558.439 1373779.244 1249449.202 1301328.944 1714633.329 1261608.552 1.087342169 1.396855064 1.697452134 1.044382577 1.239337222 1.088910852 0.990362026 1.031483927 1.359085055 1 20.26683291 -5.303515159 24.99757786 1.108782418 1.394180783 0.362769697 0.173839285 509.3139984 302586.6929 0.049328365 0.073166347 4.97E-06 5.303515159 0.285398365 AVPMAPAPAS(ph)PGSSNDSSAR ddPTM_HeLa_A486_30min_R1 8 AVPMAPAPASPGSSNDSSAR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 AVPMAPAPAS(0.997)PGS(0.003)SNDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.996)PGS(0.003)S(0.001)NDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.999)PGS(0.001)SNDSSAR;AVPMAPAPAS(0.998)PGS(0.002)SNDSSAR;AVPMAPAPAS(1)PGSSNDSSAR;AVPMAPAPAS(0.789)PGS(0.181)S(0.029)NDSSAR ;;;;;;; 269.71 1.13E-59 6000530000 1028360 1218451 1151512 365438.5 1354336 1088266 1218485 1216808 1032785 1113464 TRUE FALSE FALSE 956277.2745 1121896.505 1597408.285 850759.2962 1184462.55 954006.8056 913607.1652 939767.3811 1122307.635 834645.367 1.145728848 1.344159507 1.913876657 1.019306318 1.419120739 1.143008568 1.094605208 1.125948119 1.344652088 1 19.67080381 AVPPGNDPVS(ph)PAMVR ddPTM_HeLa_A485_30min_R1 1 AVPPGNDPVSPAMVR 15 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5;H0YB23 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 AVPPGNDPVS(1)PAMVR 144.73 3.01E-06 0 49045 69577 72544 58452 60178 49444 66261 68800 55578 99708 TRUE FALSE FALSE 59954.89105 77713.42491 99381.04441 61645.08475 54186.46702 52032.81139 52103.79605 51926.69213 66731.99481 74852.63059 0.800972398 1.038219022 1.327689403 0.823552683 0.723908654 0.69513671 0.696085036 0.693719001 0.891511685 1 16.1917654 -5.498821923 23.70215626 0.760612934 1.057508731 0.392759667 0.150961656 358.9006636 353608.8495 0.042398701 0.062428587 3.17E-06 5.498821923 0.296895796 AVPPGNDPVS(ph)PAMVR ddPTM_HeLa_A486_30min_R1 1 AVPPGNDPVSPAMVR 15 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5;H0YB23 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 AVPPGNDPVS(1)PAMVR 129.05 2.08E-05 170210000 48688 64208 54594 20083 72929 64586 71947 52166 48238 65675 TRUE FALSE FALSE 45275.22263 59119.92424 75734.25888 46754.23894 63781.56478 56618.03598 53945.09962 40288.94058 52419.30868 49229.55253 0.919675689 1.200903141 1.538390154 0.94971895 1.295595054 1.150082279 1.095786918 0.818389331 1.064793523 1 15.58723701 -6.992985139 3.749611862 0.954248972 1.187055374 0.231862339 0.172789921 0.311304705 9.619079877 0.081281739 0.049088067 1.02E-07 6.992985139 0.232806402 AVPPVS(ph)PELR ddPTM_HeLa_A485_30min_R1 6 AVPPVSPELR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR ;;;;; 143.24 6.04E-06 5669770000 2408000 3195510 3515640 2455480 3708700 2897910 3372140 3165990 2992430 3270740 TRUE FALSE FALSE 2943651.292 3569197.097 4816221.534 2589616.655 3339448.806 3049640.087 2651654.741 2389525.988 3592983.253 2455404.712 1.198845664 1.453608475 1.961477679 1.054659805 1.360040074 1.242011173 1.079925736 0.973169913 1.463295739 1 21.22752941 -5.309115576 24.99809916 1.173935553 1.529542071 0.356861771 0.227666039 436.3358779 228783.4411 0.064085006 0.095053676 4.91E-06 5.309115576 0.355606518 AVPPVS(ph)PELR ddPTM_HeLa_A486_30min_R1 5 AVPPVSPELR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR ;;;; 110.84 0.00070896 3927090000 3145153 3464036 3424627 1060995 4025090 3024987 3462859 3709299 2924508 3196190 TRUE FALSE FALSE 2924694.016 3189533.172 4750734.289 2470049.98 3520225.68 2651794.86 2596415.052 2864772.591 3178006.708 2395843.22 1.220736813 1.331277917 1.982906999 1.030973128 1.469305525 1.106831548 1.083716593 1.195726234 1.326466891 1 21.19210207 AVPPVS(ph)PELRKPGPPLS(ph)PEIR ddPTM_HeLa_A485_30min_R1 2 AVPPVSPELRKPGPPLSPEIR 21 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 AVPPVS(1)PELRKPGPPLS(1)PEIR;AVPPVS(1)PELRKPGPPLS(1)PEIR ; 93.596 0.00056806 258040000 53659 127025 75288 37710 111024 138810 161523 264990 74255 59357 TRUE FALSE FALSE 65595.25943 141879.4688 103140.1642 39770.00181 99970.06073 146077.877 127012.2915 200000.787 89157.29739 44560.39228 1.472053006 3.183981592 2.314615265 0.892496672 2.243473533 3.278199977 2.850340516 4.48830849 2.000819401 1 15.44347431 -6.119918235 5.827270004 2.943937182 2.019945494 0.091879448 1.009721124 0.444391532 19.48309077 0.328111833 0.329324397 7.59E-07 6.119918235 -0.923991688 AVPS(ph)PPPPPIVK ddPTM_HeLa_A485_30min_R1 1 AVPSPPPPPIVK 12 0 A0A0J9YY01;A0A2R8YFM0;A0A286YF23;Q96JP2 A0A0J9YY01 MYO15B Unconventional myosin-XVB 1 0 AVPS(1)PPPPPIVK 79.82 0.0063275 137920000 128050 152420 145960 132780 171950 165830 191440 190480 135550 193940 TRUE FALSE FALSE 156534.2807 170244.1931 199956.6779 140033.4352 154830.0542 174512.6024 150537.2801 143764.4813 162753.6417 145594.3272 1.075139971 1.169305126 1.373382341 0.961805572 1.063434663 1.198622266 1.033950175 0.987431888 1.117857026 1 17.15159462 -5.28155214 24.99943959 1.057197662 1.202278787 0.360445272 0.093822336 928.563925 1154169.312 0.026997372 0.040096579 5.23E-06 5.28155214 0.145081125 AVPS(ph)PPPPPIVK ddPTM_HeLa_A486_30min_R1 1 AVPSPPPPPIVK 12 0 A0A0J9YY01;A0A2R8YFM0;A0A286YF23;Q96JP2 A0A0J9YY01 MYO15B Unconventional myosin-XVB 1 0 AVPS(1)PPPPPIVK 93.345 0.0018135 167940000 179510 175830 117580 57554 161110 154610 172660 155070 152690 219360 TRUE FALSE FALSE 166927.276 161896.5904 163110.1249 133988.6206 140902.0815 135535.7902 129458.6418 119763.9462 165925.2921 164430.8282 1.015182359 0.984587819 0.991968031 0.814863138 0.856907935 0.82427238 0.787313688 0.728354576 1.009088709 1 17.32712128 -5.253276309 23.70828151 0.84413541 0.995980278 0.34982244 0.083705688 293.8631485 853471.3125 0.021946777 0.037119368 5.58E-06 5.253276309 0.151844868 AVPS(ph)PTTGEEGSVHSR ddPTM_HeLa_A485_30min_R1 3 AVPSPTTGEEGSVHSR 16 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 AVPS(0.997)PT(0.003)TGEEGSVHSR;AVPS(0.99)PT(0.01)TGEEGSVHSR;AVPS(0.99)PT(0.009)T(0.001)GEEGSVHSR ;; 140.8 1.71E-07 504170000 362638 593110 667940 319203 750260 509400 612580 749890 527760 529193 TRUE FALSE FALSE 443305.572 662469.0551 915038.8013 336640.2516 675561.4801 536071.3963 481697.2787 565978.3017 633676.5911 397274.9242 1.115865979 1.667533023 2.303288593 0.847373522 1.700488601 1.349371339 1.212503607 1.424651462 1.595058114 1 18.59977821 -5.273775303 24.99688704 1.336473163 1.692759639 0.196990193 0.357953187 1308.723628 2651928.756 0.099488211 0.148760997 5.32E-06 5.273775303 0.356286476 AVPS(ph)PTTGEEGSVHSR ddPTM_HeLa_A486_30min_R1 4 AVPSPTTGEEGSVHSR 16 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 AVPS(0.986)PT(0.014)TGEEGSVHSR;AVPS(0.964)PT(0.036)TGEEGSVHSR;AVPS(0.965)PT(0.035)TGEEGSVHSR;AVPS(0.946)PT(0.053)T(0.001)GEEGSVHSR ;;; 192.6 2.42E-18 1249890000 845810 999820 1113830 120577 1377700 776900 849640 890540 952810 635950 TRUE FALSE FALSE 786523.0868 920590.6219 1545134.805 280709.3496 1204896.019 681053.9769 637051.0854 687783.4824 1035400.338 476703.9807 1.649919276 1.931157824 3.241287818 0.588854637 2.527556027 1.428672729 1.336366196 1.442789467 2.171998515 1 18.86273415 -5.263424434 24.99996729 1.551004086 2.239825203 0.232474947 0.639340468 284.8007807 3586826.747 0.172319617 0.270703449 5.45E-06 5.263424434 0.688821117 AVPSFDFPKTPS(ph)SQNLLALLAR ddPTM_HeLa_A485_30min_R1 1 AVPSFDFPKTPSSQNLLALLAR 22 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 AVPSFDFPKT(0.007)PS(0.496)S(0.496)QNLLALLAR 59.282 0.010854 54050000 18457 35617 24942 12500 38127 46466 56368 88468 21697 20085 TRUE FALSE FALSE 22562.69597 39782.09832 34169.08372 13182.84335 34330.94201 48898.88791 44324.51632 66771.08429 26051.38888 15078.17914 1.496380682 2.638388758 2.266127986 0.874299425 2.27686259 3.243023409 2.939646486 4.428325442 1.727754303 1 13.8801746 -6.006977401 24.49401091 2.883561609 1.867579384 0.12777102 0.963313557 407.5042009 1430542.743 0.295187267 0.32206633 9.84E-07 6.006977401 -1.015982225 AVPVES(ph)PVQKV ddPTM_HeLa_A485_30min_R1 1 AVPVESPVQKV 11 1 Q8TB61-5;Q8TB61-4;Q8TB61-3;Q8TB61-2;Q8TB61 Q8TB61-5 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 1 0 AVPVES(1)PVQKV 121.21 0.00036423 185830000 156970 145980 102590 160670 145620 137350 203050 199130 141340 253960 TRUE FALSE FALSE 191887.435 163051.0911 140542.3101 169446.9953 131121.5615 144541.4336 159666.7087 150293.0553 169705.6416 190652.4458 1.006477699 0.855226853 0.737165 0.888774306 0.687751793 0.758140988 0.837475271 0.788309086 0.890130944 1 17.54058551 -9.777293271 7.251359436 0.999993167 0.820623506 0.259163248 0.086641486 3.21E-10 8.66E-11 0.084256116 0.02043511 1.67E-10 9.777293271 -0.179369661 AVPVES(ph)PVQKV ddPTM_HeLa_A486_30min_R1 1 AVPVESPVQKV 11 1 Q8TB61-5;Q8TB61-4;Q8TB61-3;Q8TB61-2;Q8TB61 Q8TB61-5 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 1 0 AVPVES(1)PVQKV 136.93 4.84E-05 241410000 349050 337980 239850 137290 394290 348340 452080 365150 350520 532340 TRUE FALSE FALSE 324583.3975 311197.2339 332726.3434 319618.0583 344834.4716 305365.3525 338964.8024 282013.3162 380903.3558 399038.599 0.813413535 0.779867498 0.833819947 0.80097028 0.864163197 0.765252668 0.84945367 0.706731922 0.954552659 1 18.60616878 -7.913854607 6.398621118 0.998954699 0.804871018 0.73178435 0.042871729 0.087999722 4.856838141 0.03802793 0.009863566 1.22E-08 7.913854607 -0.194083681 AVPVK(ac)RPR ddPTM_HeLa_A486_30min_R1 2 AVPVKRPR 8 2 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 0 1 ; AVPVK(1)RPR;AVPVK(1)RPR 129.68 0.0059777 32565000 6234.8 6994.6 7867.3 3125.7 8892.8 6206.2 7259.1 7092.7 6129.1 8659.8 FALSE TRUE FALSE 5797.772717 6440.322422 10913.72925 7276.787564 7777.382102 5440.542144 5442.796401 5477.847043 6660.375323 6491.329714 0.893156406 0.992142243 1.68127791 1.121001071 1.198118482 0.83812445 0.838471722 0.84387133 1.026041754 1 12.66429832 -6.255103095 23.62403525 0.895116921 1.191750562 0.301385809 0.202709087 299.3728518 1116174.202 0.070843153 0.069082578 5.56E-07 6.255103095 0.296633641 AVQALCAVYEHWVPR ddPTM_HeLa_A485_30min_R1 2 AVQALCAVYEHWVPR 15 0 O60701;O60701-3;O60701-2 O60701 UGDH UDP-glucose 6-dehydrogenase 0 0 ; ; 166.09 2.65E-08 64339000 20056.8 27149 29125 16787.6 28749 25464 29740 31775 22467 22790 FALSE FALSE TRUE 24518.36596 30323.83939 39899.54949 17704.66408 25886.64862 26797.25567 23385.80605 23982.13143 26975.92082 17108.87242 1.433079011 1.77240432 2.332096968 1.034823549 1.513054045 1.566278303 1.366881784 1.401736528 1.57672114 1 14.06245706 -10.67276751 0.091569681 1.13E-11 2.147124234 0.258456299 0.307518635 117.2423996 1.677052809 35.70302446 9.475804705 2.12E-11 10.67276751 2.147124234 AVQALCAVYEHWVPR ddPTM_HeLa_A486_30min_R1 2 AVQALCAVYEHWVPR 15 0 O60701;O60701-3;O60701-2 O60701 UGDH UDP-glucose 6-dehydrogenase 0 0 ; ; 209.39 7.69E-17 45686000 21745 29114 30932 9999.3 36407 27532 31134 31287 24832 31536 FALSE FALSE TRUE 20220.78779 26806.90061 42909.69879 23278.87574 31840.49458 24135.38176 23343.9439 24163.63309 26984.45775 23639.18034 0.855392933 1.134002966 1.81519402 0.98475816 1.346937336 1.020990636 0.987510716 1.022185742 1.141514104 1 14.52889239 -6.279296549 23.5687895 1.032893714 1.241267295 0.136446472 0.241237643 806.3151954 1064210.109 0.086319965 0.076321235 5.26E-07 6.279296549 0.208373581 AVQGTDGGGGSNS(ph)SSR ddPTM_HeLa_A485_30min_R1 1 AVQGTDGGGGSNSSSR 16 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 AVQGTDGGGGS(0.07)NS(0.812)S(0.091)S(0.027)R 234.51 2.24E-33 0 114390 130810 108590 87333 111110 102670 100900 127000 106480 105400 TRUE FALSE FALSE 139835.6609 146107.0916 148761.9598 92103.78065 100047.4983 108045.6424 79341.89072 95853.05087 127849.5593 79125.71974 1.767259259 1.846518327 1.880070858 1.164018235 1.264411857 1.365493329 1.002731994 1.211401946 1.615777521 1 16.2718591 -5.259868133 24.99082909 1.238147648 1.832806398 0.725989495 0.16869345 71.53851701 1137817.116 0.046127105 0.074748813 5.50E-06 5.259868133 0.59465875 AVQLMQQVASNGATLPSALSAS(ph)K ddPTM_HeLa_A485_30min_R1 2 AVQLMQQVASNGATLPSALSASK 23 0 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L2M4 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 AVQLMQQVASNGATLPS(0.003)ALS(0.039)AS(0.959)K;AVQLMQQVASNGATLPS(0.002)ALS(0.089)AS(0.909)K ; 114.79 9.36E-05 288070000 346430 270180 184502 440490 318050 283250 410050 360970 230270 521020 TRUE FALSE FALSE 423492.1583 301775.2007 252756.9676 464552.8533 286383.8253 298080.532 322439.4677 272441.5415 276483.0768 391139.3027 1.082714407 0.771528708 0.646207031 1.187691572 0.732178595 0.762082792 0.824359673 0.69653328 0.706866006 1 18.57732298 AVQLMQQVASNGATLPSALSAS(ph)K ddPTM_HeLa_A486_30min_R1 1 AVQLMQQVASNGATLPSALSASK 23 0 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L2M4 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 AVQLMQQVASNGATLPS(0.001)ALS(0.008)AS(0.991)K 125.99 2.61E-06 131290000 202950 210870 134200 109000 186820 218600 280130 223000 156040 319050 TRUE FALSE FALSE 188724.253 194159.8932 186165.834 253757.5086 163387.2936 191631.3546 210038.5111 172227.7681 169565.6728 239157.8033 0.789120198 0.811848455 0.778422579 1.061046326 0.683177765 0.801275776 0.878242349 0.720142791 0.709011667 1 17.86760334 AVQPHISPLTINIPDTMAHLIS(ph)PLPS(ph)PTGTISAANSCPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 AVQPHISPLTINIPDTMAHLISPLPSPTGTISAANSCPSSPR 42 0 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 3 0 AVQPHISPLTINIPDT(0.001)MAHLIS(0.999)PLPS(0.893)PT(0.045)GT(0.058)IS(0.005)AANS(0.038)CPS(0.514)S(0.448)PR 180.49 2.10E-22 75950000 6543.5 14776 19403 5293.6 20271 8401.5 11007 10657 11274 5539.2 TRUE FALSE FALSE 7999.079 16503.92467 26580.97713 5582.775964 18252.74806 8841.389549 8655.264531 8043.35404 13536.58839 4158.379381 1.923604911 3.96883573 6.392148164 1.342536467 4.389389805 2.126162319 2.081403291 1.934252097 3.255255749 1 12.02180567 -6.281178245 22.91648557 2.137929189 3.652948001 0.232550471 1.380655586 442.1787442 513358.887 0.481738344 0.42567466 5.23E-07 6.281178245 1.515018811 AVQPHISPLTINIPDTMAHLISPLPS(ph)PTGTISAANSCPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 AVQPHISPLTINIPDTMAHLISPLPSPTGTISAANSCPSSPR 42 0 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 2 0 AVQPHISPLTINIPDTMAHLIS(0.022)PLPS(0.382)PT(0.276)GT(0.276)IS(0.111)AANS(0.142)CPS(0.4)S(0.39)PR 73.42 0.00049739 38417000 3883.4 5103.1 7312.5 1519.5 7042.3 3137.2 2451.5 3786.7 4093.1 2152.4 TRUE FALSE FALSE 3611.193714 4698.711771 10144.09584 3537.472791 6158.989067 2750.164161 1838.108771 2924.551073 4447.893204 1613.42503 2.238215998 2.912259128 6.287305357 2.192523808 3.817338241 1.704550326 1.139258866 1.812635244 2.756801909 1 10.65591083 -6.267010573 24.02648224 1.699476897 3.540834246 0.37700925 1.160314583 301.9282904 1302098.836 0.407620994 0.369918208 5.41E-07 6.267010573 1.841357348 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLR ddPTM_HeLa_A485_30min_R1 8 AVQQHQHGYDSDEEVDSELGTWEHQLR 27 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGY(0.001)DS(0.998)DEEVDS(0.001)ELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGY(0.003)DS(0.997)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR ;;;;;;; 432.51 4.11E-224 18664850000 795952.8 1065914.4 1099528.5 866671.9 1294483 1052173.6 1094539.9 1233577 986831.7 1119451.3 TRUE FALSE FALSE 973009.7544 1190563.817 1506289.847 914015.9914 1165599.727 1107263.783 860682.5088 931040.3066 1184879.77 840392.6929 1.157803682 1.416675593 1.792364284 1.087605829 1.386970326 1.317555224 1.024143256 1.107863401 1.409912033 1 19.68070409 -6.223879195 1.224454471 1.149812219 1.408899234 0.201770216 0.206727222 0.751303549 2.313636925 0.103235595 0.096161241 5.97E-07 6.223879195 0.259087016 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLR ddPTM_HeLa_A486_30min_R1 6 AVQQHQHGYDSDEEVDSELGTWEHQLR 27 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLR ;;;;; 311.77 1.18E-108 18618620000 699211 973489 954766 203977 1087586 937182 951123 998824 828246 875226 TRUE FALSE FALSE 650199.9196 896346.1863 1324476.965 474868.7644 951170.8225 821562.0134 713141.9654 771413.5794 900039.0302 656063.7128 0.991062159 1.366248687 2.018823689 0.723815012 1.449814711 1.252259495 1.087001082 1.175821135 1.371877476 1 19.3234764 -5.277636892 24.99980033 1.172777679 1.449465345 0.177458744 0.300453279 1513.453257 2335912.57 0.083913661 0.124889056 5.28E-06 5.277636892 0.276687666 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLRR ddPTM_HeLa_A485_30min_R1 2 AVQQHQHGYDSDEEVDSELGTWEHQLRR 28 1 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AVQQHQHGY(0.001)DS(0.999)DEEVDSELGTWEHQLRR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLRR ; 185.47 1.37E-20 1169790000 76309 198887 182945 70797 193542 208031 250669 393820 138151 105767 TRUE FALSE FALSE 93283.67379 222145.1046 250623.9685 74664.46084 174272.2789 218923.1815 197111.5204 297235.0275 165876.6385 79401.2334 1.174839103 2.797753826 3.156424123 0.940343842 2.194830879 2.75717608 2.482474288 3.74345605 2.089093978 1 16.2768738 -6.149587168 6.184183397 2.587987117 2.086765377 0.02194015 0.891348659 0.743318258 35.90211563 0.292063723 0.292525187 7.09E-07 6.149587168 -0.501221741 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLRR ddPTM_HeLa_A486_30min_R1 3 AVQQHQHGYDSDEEVDSELGTWEHQLRR 28 1 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AVQQHQHGYDS(1)DEEVDSELGTWEHQLRR;AVQQHQHGYDS(1)DEEVDSELGTWEHQLRR;AVQQHQHGY(0.059)DS(0.941)DEEVDSELGTWEHQLRR ;; 141.62 3.46E-09 1333960000 169139 142251 184728 58553.1 302837 158384 216695 224348 116313 171292 TRUE FALSE FALSE 157283.2295 130978.5127 256259.6288 136314.5759 264852.3596 138844.1924 162475.619 173268.8579 126395.1045 128399.3683 1.224953297 1.020086893 1.995801321 1.061645223 2.06272323 1.081346383 1.265392667 1.349452573 0.984390392 1 16.97027858 -7.502521071 1.014348711 0.984349578 1.428336063 0.162773445 0.348125649 0.961871266 1.829363235 0.311631885 0.114313908 3.14E-08 7.502521071 0.443986485 AVQTLAGSQPTSDKPSQRPS(ph)ESTNCSPTR ddPTM_HeLa_A485_30min_R1 2 AVQTLAGSQPTSDKPSQRPSESTNCSPTR 29 2 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 AVQTLAGSQPTSDKPS(0.009)QRPS(0.254)ES(0.254)T(0.254)NCS(0.2)PT(0.027)R;AVQTLAGSQPTSDKPS(0.099)QRPS(0.297)ES(0.192)T(0.192)NCS(0.192)PT(0.029)R ; 113.17 7.40E-05 789070000 171181 160458 138678 184245 218497 185109 233030 221447 183029 235940 TRUE FALSE FALSE 209259.6229 179222.1673 189980.7631 194309.8378 196742.6715 194801.021 183241.2368 167136.776 219761.2415 177124.5002 1.181426752 1.011842897 1.072583199 1.097024057 1.110759219 1.099797153 1.034533544 0.943611843 1.240716227 1 17.43440426 -6.755301105 24.68855793 1.05001639 1.091477694 0.054919345 0.081049987 407.7716135 1640090.671 0.030214645 0.022805793 1.76E-07 6.755301105 0.041461304 AVQTLAGSQPTSDKPSQRPS(ph)ESTNCSPTR ddPTM_HeLa_A486_30min_R1 2 AVQTLAGSQPTSDKPSQRPSESTNCSPTR 29 2 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 AVQTLAGSQPTSDKPS(0.008)QRPS(0.257)ES(0.257)T(0.257)NCS(0.196)PT(0.024)R;AVQTLAGSQPTSDKPS(0.083)QRPS(0.28)ES(0.218)T(0.218)NCS(0.17)PT(0.032)R ; 137.5 6.10E-07 1325920000 133292 194469 154108 66482 222535 167508 194982 201048 156033 210635 TRUE FALSE FALSE 123948.9191 179058.5682 213782.7448 154773.4558 194622.5852 146842.5661 146195.4413 155273.7592 169558.0661 157890.625 0.785030265 1.134067132 1.353992644 0.980257414 1.232641807 0.930027138 0.925928574 0.983426085 1.073895718 1 17.26856599 -6.286022773 24.58115441 0.978074198 1.10701586 0.131920022 0.145592741 1246.209978 1246091.368 0.051665738 0.045586709 5.18E-07 6.286022773 0.128941662 AVQTLAGSQPTSDKPSQRPSESTNCS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 AVQTLAGSQPTSDKPSQRPSESTNCSPTR 29 2 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 AVQTLAGSQPTSDKPS(0.013)QRPS(0.27)ES(0.177)T(0.177)NCS(0.35)PT(0.012)R 190.44 3.97E-21 434130000 71587 72637 81039 91306 106480 94546 122430 120950 84441 130590 TRUE FALSE FALSE 87511.28118 81131.26529 111018.6984 96293.81558 95878.47733 99496.28236 96271.83034 91286.82286 101387.5342 98036.31633 0.892641466 0.82756338 1.132424213 0.982225967 0.977989391 1.014892094 0.982001711 0.931153131 1.034183433 1 16.58102866 -4.731902485 24.99999914 1.001888354 0.860102281 0.561750622 0.051700684 150.9366629 127750.5337 0.012925437 0.034186743 1.85E-05 4.731902485 -0.141786073 AVQTLAGSQPTSDKPSQRPSESTNCS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 AVQTLAGSQPTSDKPSQRPSESTNCSPTR 29 2 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 AVQTLAGSQPTSDKPS(0.012)QRPS(0.211)ES(0.154)T(0.154)NCS(0.407)PT(0.062)R 136.79 7.20E-07 350120000 107870 135620 121500 54244 139290 124410 157450 155190 117560 144840 TRUE FALSE FALSE 100308.87 124872.9773 168548.0539 126282.7733 121818.9494 109061.5591 118054.3447 119856.6248 127750.1955 108571.1212 0.923900102 1.150149099 1.55242068 1.163134099 1.122019815 1.004517204 1.087345726 1.103945721 1.176649868 1 16.72828089 -5.724034193 3.843521272 1.082274674 1.223452932 0.121872486 0.151036104 0.455021498 14.17090673 0.049084132 0.06205016 1.89E-06 5.724034193 0.141178258 AVQTRPVLQPQPGS(ph)LNSSIWDGSEVLR ddPTM_HeLa_A485_30min_R1 2 AVQTRPVLQPQPGSLNSSIWDGSEVLR 27 1 Q86TB9;Q86TB9-4 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 AVQTRPVLQPQPGS(0.969)LNS(0.014)S(0.017)IWDGSEVLR;AVQTRPVLQPQPGS(0.999)LNS(0.001)SIWDGSEVLR ; 129.68 3.18E-06 258990000 88979 92521 97253 80397 110603 90256 99393 100655 89601 105577 TRUE FALSE FALSE 108772.0716 103340.5261 133230.9317 84788.88453 99590.97697 94981.6646 78156.87358 75969.20343 107583.0988 79258.5969 1.372369381 1.303839964 1.680965055 1.06977524 1.256532173 1.198376811 0.986099636 0.95849796 1.357368198 1 16.27427981 -5.285997695 24.98752007 1.119977339 1.43753635 0.511541323 0.149479364 622.2139438 633087.0463 0.042157933 0.062562068 5.18E-06 5.285997695 0.317559011 AVQTRPVLQPQPGS(ph)LNSSIWDGSEVLR ddPTM_HeLa_A486_30min_R1 1 AVQTRPVLQPQPGSLNSSIWDGSEVLR 27 1 Q86TB9;Q86TB9-4 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 AVQTRPVLQPQPGS(1)LNSSIWDGSEVLR 177.78 2.29E-15 188760000 77437 88033 76806 27696 87913 65493 70819 78212 71046 78477 TRUE FALSE FALSE 72009.06619 81056.94447 106547.3401 64477.68768 76886.13178 57413.13954 53099.33715 60404.83496 77204.32448 58825.8484 1.224105867 1.377913735 1.811233378 1.09607748 1.307012714 0.975984896 0.902653146 1.026841713 1.312421777 1 15.8441626 -5.68887567 1.915885416 1.052314879 1.448897449 0.411947239 0.19538708 0.323904438 2.443454419 0.067295065 0.093087216 2.05E-06 5.68887567 0.39658257 AVQTRPVLQPQPGS(ph)LNSSIWDGSEVLRR ddPTM_HeLa_A485_30min_R1 1 AVQTRPVLQPQPGSLNSSIWDGSEVLRR 28 2 Q86TB9;Q86TB9-4 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 AVQTRPVLQPQPGS(0.899)LNS(0.093)S(0.008)IWDGSEVLRR 93.759 0.00090879 180410000 133240 130860 120270 406750 167150 192540 205010 213030 139530 365360 TRUE FALSE FALSE 162878.7783 146162.9387 164762.8779 428969.7226 150507.9591 202621.0967 161207.9387 160784.0585 167532.3912 274282.476 0.59383589 0.532892005 0.600705084 1.563970578 0.548733413 0.73873147 0.587744216 0.586198801 0.610802387 1 18.06530293 AVRPT(ph)RLSLEGLPSLPSMHEYPLPPEPK ddPTM_HeLa_A485_30min_R1 2 AVRPTRLSLEGLPSLPSMHEYPLPPEPK 28 2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 AVRPT(0.497)RLS(0.497)LEGLPS(0.006)LPSMHEYPLPPEPK;AVRPT(0.444)RLS(0.444)LEGLPS(0.1)LPS(0.006)MHEY(0.005)PLPPEPK ; 117.25 0.0001355 236440000 173088 198865 201378 112083 281316 200370 260004 297404 197764 222621 TRUE FALSE FALSE 211590.8285 222120.5319 275876.1022 118205.8105 253307.1913 210861.0634 204452.0214 224465.2027 237453.4208 167125.6817 1.266058132 1.329062832 1.650710408 0.707286931 1.515668859 1.261691568 1.223342931 1.343092219 1.420807493 1 17.35057392 -11.25720155 2.035576567 4.01E-05 1.299530009 0.130460529 0.233801258 3122308.36 472594.5667 14360672.43 0.060120494 5.53E-12 11.25720155 1.299489863 AVRPT(ph)RLSLEGLPSLPSMHEYPLPPEPK ddPTM_HeLa_A486_30min_R1 1 AVRPTRLSLEGLPSLPSMHEYPLPPEPK 28 2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 AVRPT(0.56)RLS(0.44)LEGLPS(0.001)LPSMHEYPLPPEPK 118.3 0.00011201 111340000 118530 121860 97809 17323 149690 110200 122650 128830 103960 86607 TRUE FALSE FALSE 110221.6591 112203.3698 135683.2642 40328.81946 130914.4844 96604.64443 91961.67274 99498.22134 112971.3365 64920.04348 1.697806304 1.72833171 2.090005751 0.621207524 2.016549549 1.488055757 1.416537448 1.532627152 1.740161134 1 15.98637635 -11.72976715 0.315199177 2.68E-35 1.619384321 0.172574754 0.384133388 112.84456 3.722786736 77.70786377 0.354644414 1.86E-12 11.72976715 1.619384321 AVS(ph)FHLVHR ddPTM_HeLa_A486_30min_R1 3 AVSFHLVHR 9 0 Q96GA3 Q96GA3 LTV1 Protein LTV1 homolog 1 0 AVS(1)FHLVHR;AVS(1)FHLVHR;AVS(1)FHLVHR ;; 104.52 0.00087951 291729000 190511 190484 132280 62343 197160 208830 213550 270577 153806 181409 TRUE FALSE FALSE 177157.1627 175389.3541 183502.3586 145137.6546 172430.3544 183066.6778 160117.5313 208972.5238 167138.0279 135983.0056 1.302788991 1.289788774 1.349450674 1.067322008 1.268028704 1.346246739 1.177481925 1.536754705 1.229109676 1 17.05306684 AVS(ph)LDSPVSVGSSPPVK ddPTM_HeLa_A485_30min_R1 3 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 AVS(0.5)LDS(0.5)PVSVGSSPPVK;AVS(1)LDSPVSVGSSPPVK;AVS(0.999)LDS(0.001)PVSVGSSPPVK ;; 282.52 1.06E-59 314580000 590870 627120 540980 718700 893900 675710 895170 1029970 742070 997260 TRUE FALSE FALSE 722306.993 700456.2288 741111.0141 757960.7612 804900.1773 711089.1308 703909.6166 777368.2426 890996.6423 748661.4352 0.964797917 0.935611474 0.989914772 1.01242127 1.075119058 0.949814024 0.940224224 1.038344178 1.190119593 1 19.51395392 -7.525400825 24.96604606 1.101450525 0.983755611 0.388015214 0.057520094 78.45417548 776561.5728 0.037889857 0.014512173 2.98E-08 7.525400825 -0.117694914 AVS(ph)LDSPVSVGSSPPVK ddPTM_HeLa_A486_30min_R1 3 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 AVS(1)LDSPVSVGSSPPVK;AVS(0.998)LDS(0.002)PVSVGSSPPVK;AVS(0.995)LDS(0.005)PVSVGSSPPVK ;; 263.99 9.38E-52 367797000 411670 482830 305920 205627 544660 590930 724710 720070 400633 600720 TRUE FALSE FALSE 382814.0589 444568.7924 424380.4168 478710.0478 476343.664 518027.0647 543379.8928 556125.78 435360.191 450295.802 0.85013908 0.987281672 0.942448086 1.06310129 1.057846114 1.150415044 1.206717652 1.235023239 0.966831556 1 18.7805135 -5.243790854 1.045088385 1.12917411 0.889808191 0.468887239 0.084302339 0.515659301 1.044790202 0.031982162 0.095584335 5.70E-06 5.243790854 -0.239365918 AVS(ph)MDNSNKYTK ddPTM_HeLa_A485_30min_R1 2 AVSMDNSNKYTK 12 1 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 0 AVS(0.999)MDNS(0.001)NKYTK;AVS(0.997)MDNS(0.003)NKYTK ; 132.84 1.10E-05 1144080000 724950 738650 512370 833800 925610 1114110 1468820 1666130 724750 1245910 TRUE FALSE FALSE 886212.6265 825028.6921 701916.9845 879348.3827 833453.0184 1172443.077 1154994.608 1257509.005 870200.6772 935327.5663 0.947489049 0.882074603 0.750450441 0.940150183 0.891081423 1.253510662 1.234855733 1.344458402 0.930369967 1 19.83511218 -6.250217976 23.05542517 1.179306144 0.878133952 0.53590944 0.124551052 181.9935486 373922.2979 0.040432605 0.040003987 5.62E-07 6.250217976 -0.301172192 AVS(ph)MDNSNKYTK ddPTM_HeLa_A486_30min_R1 2 AVSMDNSNKYTK 12 1 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 0 AVS(1)MDNSNKYTK;AVS(1)MDNSNKYTK ; 135.47 4.36E-05 497670000 891940 794590 377030 309830 789630 815960 1027630 971650 620980 1155960 TRUE FALSE FALSE 829419.612 731623.7946 523026.1132 721299.8979 690587.2424 715295.1513 770506.1048 750426.506 674807.0464 866500.092 0.957206606 0.844343586 0.603607683 0.832429107 0.796984615 0.825499221 0.889216414 0.866043193 0.778773197 1 19.72484038 -6.577896035 3.892919793 0.872108795 0.799730721 0.11911458 0.095806762 0.555172028 17.42843472 0.039057268 0.030174372 2.64E-07 6.577896035 -0.072378073 AVS(ph)PAPQSSSR ddPTM_HeLa_A485_30min_R1 8 AVSPAPQSSSR 11 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR ;;;;;;; 168.76 4.14E-08 8514865000 4325620 5944058 6053498 4493450 7140747 5551011 6109650 6735755 5417300 5807747 TRUE FALSE FALSE 5287839.246 6639163.877 8292938.817 4738915.795 6429789.156 5841653.352 4804273.366 5083800.525 6504502.42 4359982.557 1.212812019 1.522750101 1.902057797 1.086911641 1.474728184 1.339834111 1.10190197 1.16601396 1.491864322 1 22.05589093 -6.001007309 1.116859337 1.211313484 1.499971926 0.192946993 0.232932232 0.822281024 2.173615472 0.110910517 0.128634604 9.98E-07 6.001007309 0.288658442 AVS(ph)PAPQSSSR ddPTM_HeLa_A486_30min_R1 6 AVSPAPQSSSR 11 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 AVS(0.998)PAPQS(0.002)SSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR;AVS(1)PAPQSSSR ;;;;; 181.67 1.87E-10 17803190000 9567350 10818040 10444880 3215770 12870380 9178040 10465040 10564840 8863600 9390860 TRUE FALSE FALSE 8896728.171 9960779.112 14489417.26 7486475.076 11256056.93 8045746.74 7846576.304 8159456.561 9631903.985 7039327.532 1.263860522 1.415018561 2.058352477 1.063521344 1.599024463 1.142970931 1.114676973 1.159124437 1.368298881 1 22.74700618 -6.27197944 24.39049606 1.164313415 1.485345805 0.287620231 0.253919714 706.6906592 1635330.231 0.08818146 0.078632512 5.35E-07 6.27197944 0.321032389 AVS(ph)PAVPFSR ddPTM_HeLa_A485_30min_R1 4 AVSPAVPFSR 10 0 I3L2J0 I3L2J0 CIC 1 0 AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR ;;; 184.44 1.21E-09 3074040000 1851080 2661520 2653270 1796850 2792630 2516550 2710990 2964420 2289960 2490600 TRUE FALSE FALSE 2262846.36 2972761.612 3634824.985 1895007.366 2514585.952 2648312.667 2131764.84 2237391.347 2749533.967 1869739.256 1.210247018 1.589933785 1.944027742 1.013514242 1.344885894 1.416407479 1.140140173 1.196632814 1.470544066 1 20.83440566 -5.2757062 24.99877577 1.24351836 1.582255981 0.35114679 0.220482118 893.5777088 1565753.114 0.061885505 0.092270997 5.30E-06 5.2757062 0.338737621 AVS(ph)PAVPFSR ddPTM_HeLa_A486_30min_R1 4 AVSPAVPFSR 10 0 I3L2J0 I3L2J0 CIC 1 0 AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR ;;; 164.9 4.56E-07 2821510000 1891950 2238010 1991510 629790 2510170 1799750 1988810 2013620 1789920 1911750 TRUE FALSE FALSE 1759334.075 2060661.937 2762676.006 1466182.948 2195321.072 1577715.144 1491188.703 1555162.683 1945071.707 1433035.357 1.227697605 1.437970059 1.927849159 1.023131035 1.531937828 1.100960375 1.040580538 1.085222828 1.357308944 1 20.45064277 -6.042804424 1.393338942 1.116527363 1.47302916 0.275044795 0.239025266 0.550901907 2.19265226 0.101154663 0.109600117 9.06E-07 6.042804424 0.356501797 AVS(ph)PLDPSK ddPTM_HeLa_A485_30min_R1 1 AVSPLDPSK 9 0 Q14865;Q14865-2 Q14865 ARID5B AT-rich interactive domain-containing protein 5B 1 0 AVS(0.993)PLDPS(0.007)K 68.893 0.010461 0 364780 316940 278220 521540 350310 330110 411900 327240 320030 683520 TRUE FALSE FALSE 445924.0525 354003.376 381145.1557 550030.4096 315431.9064 347394.0492 323894.2001 246983.8769 384257.0855 513131.0433 0.869025678 0.689888832 0.742783273 1.07191022 0.614719983 0.677008444 0.63121147 0.4813271 0.748847864 1 18.96896778 AVS(ph)PLDPSKEVSGK ddPTM_HeLa_A485_30min_R1 1 AVSPLDPSKEVSGK 14 1 Q14865;Q14865-2 Q14865 ARID5B AT-rich interactive domain-containing protein 5B 1 0 AVS(0.992)PLDPS(0.008)KEVSGK 42.382 0.037181 321130000 296780 271720 215550 412770 377160 452920 588020 639110 324000 674360 TRUE FALSE FALSE 362797.6871 303495.2904 295290.9148 435318.5799 339608.6261 476634.1909 462384.7233 482367.2704 389023.8281 506254.4627 0.716631089 0.599491585 0.583285554 0.859880973 0.670825941 0.941491337 0.913344489 0.952815839 0.768435356 1 18.94950319 -5.857523497 1.095199622 0.914765543 0.636464475 0.591619164 0.092959404 0.341260018 0.873991149 0.040945377 0.055419728 1.39E-06 5.857523497 -0.278301068 AVS(ph)PLLLTTTNSSEGLSMGNYIGLINR ddPTM_HeLa_A485_30min_R1 2 AVSPLLLTTTNSSEGLSMGNYIGLINR 27 0 P19525;P19525-2;C9JZT2 P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 AVS(0.98)PLLLT(0.016)T(0.002)T(0.002)NSSEGLSMGNYIGLINR;AVS(0.964)PLLLT(0.026)T(0.004)T(0.004)NS(0.001)SEGLSMGNYIGLINR ; 137.24 1.71E-06 61672000 22454.2 27159 33396 27559 37308 30548 30532 36819 30358 41604 TRUE FALSE FALSE 27449.05932 30335.0088 45750.57012 29064.47839 33593.48452 32147.44604 24008.58878 27789.08252 36450.57214 31232.88846 0.87885113 0.971252109 1.464820334 0.930572861 1.075580459 1.029281876 0.768695755 0.889737834 1.167057353 1 14.93077838 -6.535809987 24.85010553 0.940299159 1.071736944 0.074019983 0.175711811 527.3571667 1013417.892 0.068500989 0.053092471 2.91E-07 6.535809987 0.131437785 AVS(ph)PLLLTTTNSSEGLSMGNYIGLINR ddPTM_HeLa_A486_30min_R1 2 AVSPLLLTTTNSSEGLSMGNYIGLINR 27 0 P19525;P19525-2;C9JZT2 P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 AVS(0.996)PLLLT(0.003)TTNSSEGLSMGNYIGLINR;AVS(0.965)PLLLT(0.012)T(0.007)T(0.007)NS(0.008)S(0.001)EGLSMGNYIGLINR ; 167.87 5.62E-14 54266000 59528 70799 71669 25359 83848 65742 70736 74433 68132 71032 TRUE FALSE FALSE 55355.3946 65188.62939 99421.15616 59037.03357 73331.00199 57631.42046 53037.10463 57486.23076 74037.73662 53245.12486 1.039633107 1.224311701 1.867234914 1.108778198 1.377234107 1.08237929 0.996093159 1.079652474 1.390507334 1 15.70036182 -6.263872587 24.69113266 1.107602642 1.33621672 0.173126335 0.232667316 334.4024597 3393350.572 0.081635577 0.075375425 5.45E-07 6.263872587 0.228614077 AVS(ph)PPHLDGPPS(ph)PR ddPTM_HeLa_A485_30min_R1 6 AVSPPHLDGPPSPR 14 0 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 2 0 AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR ;;;;; 130.36 1.89E-05 14988760000 1231620 1732840 1707430 1337360 1565880 1443500 1580340 1496340 1386480 1556320 TRUE FALSE FALSE 1505589.62 1935480.564 2339079.409 1410416.59 1409975.489 1519079.428 1242687.449 1129360.269 1664733.818 1168358.066 1.28863716 1.656581677 2.002022734 1.207178374 1.206800835 1.300183114 1.063618667 0.966621708 1.424848997 1 20.15605105 -5.393515307 8.072980512 1.165122193 1.6487942 0.538683299 0.204739421 0.2177997 13.22681609 0.058022779 0.086158171 4.04E-06 5.393515307 0.483672007 AVS(ph)PPHLDGPPS(ph)PR ddPTM_HeLa_A486_30min_R1 6 AVSPPHLDGPPSPR 14 0 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 2 0 AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR;AVS(1)PPHLDGPPS(1)PR ;;;;; 126.22 2.59E-05 13946900000 1704260 1930150 1475050 534342 1673640 1528640 1593020 1586640 1561940 1838530 TRUE FALSE FALSE 1584800.175 1777197.885 2046228.863 1243975.18 1463716.465 1340051.939 1194429.547 1225396.708 1697330.217 1378150.121 1.149947419 1.28955319 1.484764854 0.902641273 1.062087825 0.972355564 0.866690449 0.889160542 1.231600383 1 20.39430162 -5.272431899 24.99891189 0.981829264 1.306234963 0.580626262 0.124072236 483.9705155 1100632.65 0.035038913 0.052517475 5.34E-06 5.272431899 0.324405699 AVS(ph)PPHLDGPPS(ph)PRS(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_A485_30min_R1 2 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 3 0 AVS(1)PPHLDGPPS(1)PRS(0.977)PVIGS(0.023)EVFLPNSNHVASGAGEAEER;AVS(1)PPHLDGPPS(1)PRS(1)PVIGSEVFLPNSNHVASGAGEAEER ; 157.02 1.40E-10 643900000 35242 57668 67045 33762 97179 58108 69924 89809 65897 57617 TRUE FALSE FALSE 43081.46132 64411.77096 91847.73548 35606.33257 87503.51754 61150.44503 54984.16617 67783.20193 79121.92346 43254.14226 0.996007759 1.489146879 2.123443691 0.823188964 2.023008964 1.413747721 1.271188453 1.567091575 1.82923344 1 15.40055068 -10.04218496 4.952802922 0.999990813 1.509382017 0.128611168 0.393347848 251194062.2 0.533212983 26317.86805 0.090401743 9.07E-11 10.04218496 0.509391204 AVS(ph)PPHLDGPPS(ph)PRS(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_A486_30min_R1 3 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 3 0 AVS(1)PPHLDGPPS(1)PRS(0.996)PVIGS(0.004)EVFLPNSNHVASGAGEAEER;AVS(0.999)PPHLDGPPS(0.976)PRS(0.635)PVIGS(0.389)EVFLPNS(0.001)NHVASGAGEAEER;AVS(1)PPHLDGPPS(1)PRS(1)PVIGSEVFLPNSNHVASGAGEAEER ;; 147.12 1.05E-10 953660000 108798 127559 158180 25884.4 231131 114890 156442 159343 120931 90401 TRUE FALSE FALSE 101171.822 117450.7603 219431.5322 60260.19133 202140.3948 100716.0399 117298.5569 123064.0773 131413.3964 67764.00119 1.493002483 1.733232368 3.238172604 0.889265543 2.983005596 1.486276462 1.730986289 1.816068638 1.939280357 1 16.04823144 -10.19830178 0.343815596 0.467445199 2.014063661 0.150851412 0.661247943 32.51078179 2.660262461 16.71014286 0.534343959 6.33E-11 10.19830178 1.546618462 AVS(ph)PPHLDGPPS(ph)PRSPVIGS(ph)EVFLPNSNHVASGAGEAEER ddPTM_HeLa_A486_30min_R1 1 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 3 0 AVS(1)PPHLDGPPS(0.994)PRS(0.131)PVIGS(0.863)EVFLPNS(0.012)NHVASGAGEAEER 110.14 2.10E-05 465870000 74542 81117 102340 33887 143360 90761 107220 112440 74292 92861 TRUE FALSE FALSE 69316.99074 74688.9935 141968.7888 78890.64855 125378.452 79563.83061 80392.42194 86839.86655 80731.69038 69608.00118 0.995819296 1.072994372 2.039546983 1.13335604 1.801207475 1.143027084 1.154930763 1.247555814 1.15980475 1 16.08696553 -6.40739084 18.32304575 1.157186989 1.415975664 0.158048915 0.307316188 6.15614062 955.1857182 0.108270943 0.095485221 3.91E-07 6.40739084 0.258788675 AVS(ph)PPHLDGPPSPR ddPTM_HeLa_A485_30min_R1 3 AVSPPHLDGPPSPR 14 0 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 AVS(1)PPHLDGPPSPR;AVS(1)PPHLDGPPSPR;AVS(1)PPHLDGPPSPR ;; 129.88 1.52E-05 831880000 361170 497600 531650 359250 567290 440880 503000 486960 435740 531490 TRUE FALSE FALSE 441511.0205 555789.9915 728329.4588 378874.9178 510808.6157 463963.7951 395529.9409 367532.2965 523189.0212 398999.3243 1.106545785 1.392959731 1.825390206 0.949562806 1.280224262 1.162818498 0.991304789 0.921135135 1.3112529 1 18.60602678 -5.292558636 24.99995664 1.091849071 1.436764961 0.385305403 0.204594065 690.6263768 554819.9594 0.058098058 0.086183125 5.10E-06 5.292558636 0.344915889 AVS(ph)PPHLDGPPSPR ddPTM_HeLa_A486_30min_R1 3 AVSPPHLDGPPSPR 14 0 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 AVS(1)PPHLDGPPSPR;AVS(1)PPHLDGPPSPR;AVS(1)PPHLDGPPSPR ;; 147.09 5.55E-08 642610000 585270 631250 589440 186218 718090 600420 631370 661600 555820 679550 TRUE FALSE FALSE 544245.5953 581227.451 817686.9538 433524.9149 628020.4563 526346.285 473394.548 510968.1226 603998.9251 509386.2569 1.068433999 1.14103481 1.605239526 0.851073049 1.232896349 1.033295025 0.929342992 1.003105435 1.185738557 1 18.95840051 -5.293347714 24.99117209 1.037708113 1.258516392 0.297405055 0.167145493 845.95334 662563.8625 0.046763387 0.069368235 5.09E-06 5.293347714 0.220808279 AVS(ph)PSNPK ddPTM_HeLa_A485_30min_R1 1 AVSPSNPK 8 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AVS(0.99)PS(0.01)NPK 121.61 0.00070223 3235700000 2103900 2487700 2095000 3322800 2972400 3003000 3170700 3428100 2217900 4411400 TRUE FALSE FALSE 2571905.297 2778614.875 2870027.68 3504316.15 2676457.419 3160232.436 2493254.043 2587353.1 2663012.186 3311719.166 0.776607305 0.83902491 0.866627735 1.058156195 0.808177652 0.954257375 0.752857932 0.781271892 0.804117757 1 21.65914891 -6.764108801 24.99723071 0.816334568 0.885479087 0.045427361 0.096969435 172.4801386 1615113.99 0.038803567 0.027501624 1.72E-07 6.764108801 0.069144519 AVS(ph)PSSSEKR ddPTM_HeLa_A485_30min_R1 2 AVSPSSSEKR 10 1 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 1 0 AVS(0.5)PS(0.5)SSEKR;AVS(0.979)PS(0.021)SSEKR ; 191.29 3.21E-10 1099730000 963010 1091300 850840 1203930 1324060 1175900 1463340 1746850 1019530 1511790 TRUE FALSE FALSE 1177228.252 1218918.042 1165601.122 1269697.647 1192231.937 1237468.306 1150685.455 1318432.299 1224140.319 1134928.575 1.037270783 1.074004187 1.027025971 1.118746743 1.050490721 1.09034906 1.013883587 1.161687464 1.078605602 1 20.11417008 -5.232252758 24.84575859 1.077404198 1.048890708 0.063761997 0.045799868 1859.232871 1582709.968 0.011878069 0.020568632 5.86E-06 5.232252758 -0.028513489 AVS(ph)PSSSEKR ddPTM_HeLa_A486_30min_R1 4 AVSPSSSEKR 10 1 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 1 0 AVS(0.981)PS(0.018)SSEKR;AVS(0.887)PS(0.11)S(0.003)S(0.001)EKR;AVS(0.997)PS(0.003)SSEKR;AVS(0.998)PS(0.002)SSEKR ;;; 154.85 1.33E-06 1811900000 1749800 1679250 1259030 691241 1852230 1902410 2085450 2036160 1515630 2120180 TRUE FALSE FALSE 1627148.056 1546180.114 1746560.134 1609243.981 1619906.042 1667709.996 1563648.352 1572570.817 1647006.029 1589273.128 1.023831604 0.97288508 1.098967889 1.01256603 1.019274795 1.049353926 0.983876418 0.989490598 1.036326607 1 20.59993565 -6.765080901 24.99986243 1.001547625 1.028833262 0.142709388 0.032435759 193.210187 1326403.756 0.013142711 0.009251388 1.72E-07 6.765080901 0.027285637 AVS(ph)REDSARPGAHAK ddPTM_HeLa_A485_30min_R1 2 AVSREDSARPGAHAK 15 2 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 1 0 AVS(1)REDSARPGAHAK;AVS(1)REDSARPGAHAK ; 135.27 4.65E-06 642820000 371340 471520 515570 408200 761040 744190 929590 1000120 474790 741850 TRUE FALSE FALSE 453943.3019 526660.1623 706300.7977 430498.9324 685268.1854 783154.6377 730975.5024 754839.0019 570075.998 556920.4477 0.815095412 0.945664977 1.268225651 0.77299897 1.230459733 1.406223529 1.31253127 1.355380297 1.023621956 1 19.08711174 -5.87795987 8.809583132 1.255177973 0.973350637 0.352578309 0.175463471 0.281757884 20.51887605 0.053667754 0.060929029 1.32E-06 5.87795987 -0.281827336 AVS(ph)REDSARPGAHAK ddPTM_HeLa_A486_30min_R1 2 AVSREDSARPGAHAK 15 2 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 1 0 AVS(0.999)REDS(0.001)ARPGAHAK;AVS(1)REDSARPGAHAK ; 130.56 8.18E-06 411980000 455920 356320 347530 169045 663880 420670 534380 630840 324660 504380 TRUE FALSE FALSE 423962.3624 328083.9055 482102.9232 393545.3031 580609.98 368772.0125 400672.4719 487211.5031 352801.7902 378079.965 1.121356331 0.867763267 1.275134807 1.040904939 1.535680368 0.975380995 1.059755895 1.28864671 0.933140666 1 18.52833188 -10.21316336 13.31523677 0.999999994 1.12754585 0.035626585 0.188383842 0 0 0.175949311 0.042673976 6.12E-11 10.21316336 0.127545857 AVSDWIDEQEKGSSEQAES(ph)DNMDVPPEDDSKEGAGEQK ddPTM_HeLa_A485_30min_R1 1 AVSDWIDEQEKGSSEQAESDNMDVPPEDDSKEGAGEQK 38 2 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EM82;K7EJ09;K7ER69;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 AVSDWIDEQEKGS(0.004)S(0.004)EQAES(0.992)DNMDVPPEDDSKEGAGEQK 260.14 2.90E-65 272980000 75152 39060 25280 167810 73552 82889 165930 154720 50562 245810 TRUE FALSE FALSE 91869.30313 43627.72722 34632.12399 176977.0354 66228.90462 87228.93987 130477.7 116774.6774 60709.32962 184534.0908 0.497844614 0.236420962 0.187673312 0.959047917 0.358897938 0.47269824 0.707065559 0.632808154 0.328987069 1 17.49352784 -14 0.127497552 2.599073201 0.280944134 0.327312242 0.220628158 178.8073203 1.446230105 74.08176135 1.808856711 1.00E-14 14 -2.318129067 AVSDWIDEQEKGSSEQAES(ph)DNMDVPPEDDSKEGAGEQK ddPTM_HeLa_A486_30min_R1 1 AVSDWIDEQEKGSSEQAESDNMDVPPEDDSKEGAGEQK 38 2 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EM82;K7EJ09;K7ER69;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 AVSDWIDEQEKGS(0.008)S(0.008)EQAES(0.983)DNMDVPPEDDSKEGAGEQK 136.89 2.32E-07 198090000 68419 58088 15629 69175 47538 98371 144830 123630 47879 173640 TRUE FALSE FALSE 63623.18142 53484.89533 21680.96736 161042.8959 41575.34077 86234.98618 108592.0021 95482.14782 52029.19027 130159.4138 0.48880968 0.410918379 0.166572411 1.237274287 0.319418623 0.662533609 0.834300025 0.733578502 0.399734362 1 16.98992013 -7.434900125 0.088197666 1.388406107 1.03E-18 0.176042477 0.285776131 22.901308 2.067928614 15.32699298 15.32875877 3.67E-08 7.434900125 -1.388406107 AVSEGCAS(ph)EDEVEGEA ddPTM_HeLa_A485_30min_R1 2 AVSEGCASEDEVEGEA 16 0 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-6;Q9BYX2-5 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 AVSEGCAS(1)EDEVEGEA;AVSEGCAS(1)EDEVEGEA ; 203.85 3.01E-25 760890000 385490 387480 545360 523340 646520 360590 483120 454030 473460 614840 TRUE FALSE FALSE 471240.9206 432792.4154 747111.3583 551928.739 582150.1987 379469.9348 379897.4653 342678.4306 568479.0792 461571.7033 1.020948462 0.937649367 1.618624697 1.195759478 1.261234592 0.822125646 0.823051895 0.742416461 1.231615966 1 18.81619526 -6.257841663 24.97415436 0.901443637 1.214149083 0.311514038 0.208898951 373.7096459 2594171.29 0.072267497 0.069560301 5.52E-07 6.257841663 0.312705445 AVSEGCAS(ph)EDEVEGEA ddPTM_HeLa_A486_30min_R1 2 AVSEGCASEDEVEGEA 16 0 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-6;Q9BYX2-5 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 AVSEGCAS(1)EDEVEGEA;AVSEGCAS(1)EDEVEGEA ; 278.06 1.36E-58 884520000 423210 712960 618740 232250 856690 637770 661470 703730 608920 548030 TRUE FALSE FALSE 393545.1645 656462.453 858332.6984 540689.7373 749235.9519 559088.4218 495963.2097 543506.0413 661701.6759 410799.7209 0.957997643 1.598010952 2.089418894 1.316188181 1.823847276 1.360975661 1.207311457 1.323043843 1.610764667 1 18.64807568 -6.496225357 22.97785855 1.308192152 1.577241582 0.145222487 0.311787313 534.5661285 460849.6839 0.109839763 0.096474432 3.19E-07 6.496225357 0.26904943 AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK ddPTM_HeLa_A485_30min_R1 3 AVSETPAVPPVSEDEDDDDDDATPPPVIAPRPEHTK 36 1 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 AVSETPAVPPVS(0.999)EDEDDDDDDAT(0.001)PPPVIAPRPEHTK;AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK;AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK ;; 201.78 1.50E-29 3180480000 860596 986971 910171 992569 1317638 1185717 1444827 1533227 961132 1408457 TRUE FALSE FALSE 1052032.611 1102388.673 1246881.128 1046790.531 1186449.334 1247799.309 1136127.908 1157200.674 1154022.376 1057354.591 0.994966703 1.042591277 1.179245959 0.990008972 1.122092196 1.180114334 1.074500379 1.094430085 1.091424189 1 20.01202784 -4.529901734 24.81694339 1.095947723 1.006872811 0.206188778 0.059799366 181.7995226 642421.5457 0.014636 0.038917118 2.95E-05 4.529901734 -0.089074912 AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK ddPTM_HeLa_A486_30min_R1 4 AVSETPAVPPVSEDEDDDDDDATPPPVIAPRPEHTK 36 1 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK;AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK;AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK;AVSETPAVPPVS(1)EDEDDDDDDATPPPVIAPRPEHTK ;;; 157.96 1.55E-10 6229800000 2716520 3082530 2182840 1068850 3444710 3063950 3495780 3556730 2682240 3487030 TRUE FALSE FALSE 2526105.976 2838259.096 3028094.106 2488336.817 3012642.351 2685951.001 2621098.869 2746940.222 2914738.723 2613854.991 0.966429272 1.085851781 1.158478231 0.951979672 1.15256675 1.027582253 1.002771339 1.050915307 1.115111103 1 21.31774768 AVSNLLSTQLTFQAIHKPR ddPTM_HeLa_A485_30min_R1 2 AVSNLLSTQLTFQAIHKPR 19 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 0 0 ; ; 164.02 1.15E-14 35738000 52843 63865 58005 52835 70724 65411 77897 90012 48059 81673 FALSE FALSE TRUE 64597.74304 71333.4562 79463.46329 55721.24226 63682.47023 68835.81882 61253.66959 67936.41587 57704.00048 61313.42418 1.053566065 1.163423135 1.296020641 0.908793515 1.038638293 1.122687564 0.999025424 1.108018624 0.941131591 1 15.90391536 -5.263512793 24.99999082 1.025968958 1.170245261 0.420059929 0.082495452 187.1139605 2256120.466 0.022892556 0.035917129 5.45E-06 5.263512793 0.144276303 AVSNLLSTQLTFQAIHKPR ddPTM_HeLa_A486_30min_R1 2 AVSNLLSTQLTFQAIHKPR 19 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 0 0 ; ; 148.06 4.02E-10 52972000 55195 57641 47401 20308.4 61363 51289 62531 55855 53648 71492 FALSE FALSE TRUE 51326.11553 53073.31724 65755.93664 47278.98153 53666.28035 44961.48465 46885.08241 43138.03581 58298.25184 53589.93787 0.957756578 0.990359746 1.227020207 0.88223617 1.001424568 0.83899117 0.874885926 0.804965214 1.087858172 1 15.70967452 AVSPPHLDGPPS(ph)PR ddPTM_HeLa_A485_30min_R1 7 AVSPPHLDGPPSPR 14 0 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR ;;;;;; 185.28 1.34E-17 5891580000 1084998 1704062 1662755 1130414 1663338 1580839 1764626 1844113 1505822 1748101 TRUE FALSE FALSE 1326352.062 1903337.228 2277877.268 1192165.654 1497730.228 1663609.286 1387599.239 1391841.395 1808026.663 1312331.592 1.010683634 1.450347792 1.735748252 0.908433251 1.141274231 1.267674493 1.057354138 1.060586672 1.377720901 1 20.32370087 -5.276802813 24.99918985 1.123584204 1.404068727 0.283852949 0.205544036 1025.598301 1668838.852 0.058017278 0.086407279 5.29E-06 5.276802813 0.280484523 AVSPPHLDGPPS(ph)PR ddPTM_HeLa_A486_30min_R1 6 AVSPPHLDGPPSPR 14 0 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR ;;;;; 216.29 1.02E-27 7376600000 2111790 2431400 2185810 483827 2590310 2031900 2346570 2279240 2009800 2112490 TRUE FALSE FALSE 1963764.426 2238727.009 3032214.17 1126373.707 2265409.166 1781224.837 1759433.367 1760306.807 2184011.082 1583508.754 1.240134872 1.413776213 1.914870481 0.711315112 1.430626235 1.124859482 1.111097973 1.111649559 1.379222614 1 20.59469341 -5.258920303 24.99772297 1.141022765 1.512012056 0.358669546 0.243521566 258.1026287 2561233.869 0.065053726 0.106258349 5.51E-06 5.258920303 0.370989291 AVSPPHLDGPPS(ph)PRS(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_A485_30min_R1 3 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 2 0 AVSPPHLDGPPS(1)PRS(1)PVIGSEVFLPNSNHVASGAGEAEER;AVS(0.004)PPHLDGPPS(0.95)PRS(0.856)PVIGS(0.191)EVFLPNSNHVASGAGEAEER;AVSPPHLDGPPS(1)PRS(1)PVIGSEVFLPNSNHVASGAGEAEER ;; 227.27 9.64E-41 700830000 51403 85040 96985 49475 122225 83494 113158 111032 84312 95359 TRUE FALSE FALSE 62837.42001 94984.68825 132863.7874 52177.69397 110055.8498 87865.61673 88980.86888 83801.22791 101232.645 71587.75625 0.877767698 1.326828682 1.855956861 0.72886338 1.537355766 1.227383303 1.242962115 1.170608387 1.414105573 1 16.12742524 -10.2295626 4.665646921 0.999930914 1.271630994 0.065156597 0.299683579 0.000204937 3.38E-05 0.276122637 0.066952585 5.89E-11 10.2295626 0.27170008 AVSPPHLDGPPS(ph)PRS(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_A486_30min_R1 2 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 2 0 AVS(0.003)PPHLDGPPS(0.997)PRS(1)PVIGSEVFLPNSNHVASGAGEAEER;AVSPPHLDGPPS(1)PRS(1)PVIGSEVFLPNSNHVASGAGEAEER ; 132.23 1.22E-07 251710000 34328 35141 46794 17466.4 58676 30533.6 48671 50763 32378 34497 TRUE FALSE FALSE 31921.78447 32356.29918 64913.88999 40662.6619 51316.30895 26766.67487 36493.00101 39205.37305 35184.55111 25858.72666 1.234468537 1.251271944 2.51032817 1.572492816 1.984487079 1.035111869 1.411245089 1.51613703 1.360645154 1 14.65836362 -6.260745943 24.99999454 1.306049975 1.721846583 0.258870434 0.373794734 102.6231074 3699838.915 0.131078968 0.123736076 5.49E-07 6.260745943 0.415796608 AVSPS(ph)SSEKR ddPTM_HeLa_A485_30min_R1 1 AVSPSSSEKR 10 1 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 1 0 AVS(0.348)PS(0.652)SSEKR 179.6 9.84E-10 773780000 686040 746900 626740 847360 974840 822150 1093800 1163700 755070 1123200 TRUE FALSE FALSE 838647.2312 834243.4578 858597.2068 893649.1312 877781.5067 865196.5027 860100.6945 878300.7504 906605.6231 843206.911 0.994592454 0.989369806 1.018252099 1.059821877 1.041003691 1.026078524 1.020035158 1.041619487 1.07518761 1 19.68552717 -4.944833285 4.037839918 1.038460241 0.992568472 0.462360448 0.019577191 0.181556586 6.128080839 0.00524707 0.011525868 1.14E-05 4.944833285 -0.045891769 AVSRLS(ph)R ddPTM_HeLa_A485_30min_R1 6 AVSRLSR 7 1 O43665 O43665 RGS10 Regulator of G-protein signaling 10 1 0 AVSRLS(1)R;AVS(0.002)RLS(0.998)R;AVSRLS(1)R;AVSRLS(1)R;AVSRLS(1)R;AVS(0.003)RLS(0.997)R ;;;;; 88.496 0.0034748 1783109000 433556 589433 651149 418432 705350 481726 564438 761282 626693 558201 TRUE FALSE FALSE 529999.0364 658362.062 892036.1117 441289.8806 635122.8774 506948.4285 443841.2103 574576.3959 752464.5367 419051.7636 1.264757919 1.571075746 2.128701485 1.053067709 1.515619149 1.20975133 1.059156049 1.371134656 1.795636248 1 18.67676894 -5.290276507 24.99148497 1.298698218 1.646468493 0.240196456 0.299671833 1054.671056 914020.7563 0.084930954 0.12599773 5.13E-06 5.290276507 0.347770274 AVSRLS(ph)R ddPTM_HeLa_A486_30min_R1 4 AVSRLSR 7 1 O43665 O43665 RGS10 Regulator of G-protein signaling 10 1 0 AVSRLS(1)R;AVSRLS(1)R;AVSRLS(1)R;AVSRLS(1)R ;;; 80.231 0.0060787 1501530000 505315 428024 382701 176402 475630 389233 464777 590040 322580 364856 TRUE FALSE FALSE 469895.0279 394105.8194 530893.0763 410672.7709 415972.0503 341213.3899 348484.8787 455700.7725 350541.4941 273493.6828 1.718120226 1.441005201 1.941152976 1.501580463 1.520956704 1.247609767 1.274197178 1.666220469 1.281716969 1 18.06114798 -5.834642662 2.105655751 1.33805751 1.671596389 0.419038696 0.19721585 0.346770442 3.154940802 0.066777737 0.081882909 1.46E-06 5.834642662 0.333538879 AVSTVVVTTAPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 AVSTVVVTTAPSPK 14 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 AVSTVVVTTAPS(1)PK;AVSTVVVTTAPS(1)PK ; 258.16 1.24E-41 307730000 463340 471230 354060 754570 647050 565500 854640 885390 470850 1064860 TRUE FALSE FALSE 566408.3845 526336.2493 485041.5277 795790.2484 582627.4301 595108.7056 672039.1822 668246.7143 565345.2761 799409.9993 0.708533024 0.658405887 0.606749388 0.995471972 0.728821794 0.744434903 0.840668972 0.835924888 0.707203158 1 19.60857609 -14 0.053285565 1.845531553 0.355435137 0.359046993 0.101476745 577.4515067 2.261870729 68.6684554 13.91129983 1.00E-14 14 -1.490096416 AVSTVVVTTAPS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AVSTVVVTTAPSPK 14 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 AVSTVVVTTAPS(1)PK;AVSTVVVT(0.002)T(0.126)APS(0.872)PK;AVSTVVVTT(0.001)APS(0.999)PK ;; 255.21 1.53E-41 354980000 1507340 1216680 703630 677180 1077520 1091910 1431920 1400030 781980 1617300 TRUE FALSE FALSE 1401683.25 1120265.846 976094.3799 1576509.263 942367.3941 957201.2459 1073638.471 1081273.731 849762.656 1212317.553 1.156201398 0.924069641 0.805147445 1.3004095 0.777327188 0.789563133 0.885608286 0.891906356 0.700940652 1 20.20933622 AVT(ph)PLRPGELLFR ddPTM_HeLa_A485_30min_R1 2 AVTPLRPGELLFR 13 1 B0QZ88;Q9H7B4 B0QZ88 SMYD3 Histone-lysine N-methyltransferase SMYD3 1 0 AVT(1)PLRPGELLFR;AVT(1)PLRPGELLFR ; 131.45 2.25E-05 486300000 271439 405660 403260 324030 470700 393430 471870 500520 366020 459930 TRUE FALSE FALSE 331819.6691 453098.4082 552442.655 341730.9384 423835.4553 414029.3864 371051.1197 377766.6852 439476.8567 345277.9154 0.961021989 1.312271617 1.59999418 0.989727183 1.227519735 1.199119225 1.07464481 1.094094549 1.272820638 1 18.39739853 AVT(ph)PLRPGELLFR ddPTM_HeLa_A486_30min_R1 3 AVTPLRPGELLFR 13 1 B0QZ88;Q9H7B4 B0QZ88 SMYD3 Histone-lysine N-methyltransferase SMYD3 1 0 AVT(1)PLRPGELLFR;AVT(1)PLRPGELLFR;AVT(1)PLRPGELLFR ;; 145.43 1.08E-07 494387000 566754 691692 565565 228938 784978 617424 682036 730694 601971 668317 TRUE FALSE FALSE 527027.4713 636879.8068 784566.9144 532979.2339 686518.7396 541252.5044 511383.379 564330.9271 654150.331 500966.0732 1.052022282 1.27130327 1.566107879 1.063902852 1.370389686 1.080417484 1.020794434 1.12648532 1.305777708 1 18.93435338 -6.278237935 24.35244994 1.109231524 1.270693998 0.201074042 0.157257707 998.7431011 1447848.086 0.055440115 0.049030379 5.27E-07 6.278237935 0.161462474 AVT(ph)PSSEAK ddPTM_HeLa_A485_30min_R1 4 AVTPSSEAK 9 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 AVT(0.922)PS(0.078)SEAK;AVT(0.988)PS(0.011)S(0.001)EAK;AVT(0.631)PS(0.332)S(0.037)EAK;AVT(0.991)PS(0.008)SEAK ;;; 168 3.88E-05 4959460000 4408220 4208500 3441300 5982900 5446100 4609010 6377700 6042700 4075990 7517300 TRUE FALSE FALSE 5388813.331 4700647.466 4714380.074 6309730.677 4903867.162 4850330.637 5015052.294 4560718.35 4894003.806 5643375.456 0.954891868 0.832949624 0.835383028 1.118077421 0.868959934 0.85947332 0.888661818 0.808154337 0.867212158 1 22.42812691 AVT(ph)PSSEAK ddPTM_HeLa_A486_30min_R1 3 AVTPSSEAK 9 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 AVT(0.687)PS(0.188)S(0.125)EAK;AVT(0.901)PS(0.079)S(0.02)EAK;AVT(0.934)PS(0.062)S(0.004)EAK ;; 155 0.00020851 4384230000 5253900 5633800 3287070 2427780 5427700 5832000 7069300 6543400 4194300 7074900 TRUE FALSE FALSE 4885628.741 5187357.17 4559911.535 5651994.533 4746907.255 5112507.135 5300486.369 5053610.661 4557865.301 5303298.99 0.921243315 0.978137793 0.859825468 1.065750685 0.895085731 0.96402393 0.999469647 0.952918301 0.859439626 1 22.33845866 AVT(ph)PVPTK ddPTM_HeLa_A485_30min_R1 6 AVTPVPTK 8 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 AVT(1)PVPTK;AVT(1)PVPTK;AVT(1)PVPTK;AVT(1)PVPTK;AVT(1)PVPTK;AVT(1)PVPTK ;;;;; 146.11 0.0015343 28348500000 24996000 24633900 20269400 26870900 23369800 22587100 27799500 23546700 20865700 32529700 TRUE FALSE FALSE 30556273.96 27514620.32 27767894.54 28338789.23 21043020.66 23769725.63 21859909.72 17771834.91 25053254.6 24420644.45 1.251247649 1.126695095 1.137066411 1.160443955 0.861689817 0.973345551 0.895140575 0.727738162 1.025904728 1 24.54159794 -5.755551439 24.99122825 0.902384031 1.163580122 0.683468113 0.084729198 79.37809957 336916.4571 0.024757669 0.03110612 1.76E-06 5.755551439 0.261196091 AVT(ph)PVPTK ddPTM_HeLa_A486_30min_R1 6 AVTPVPTK 8 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 AVT(1)PVPTK;AVT(0.998)PVPT(0.002)K;AVT(1)PVPTK;AVT(1)PVPTK;AVT(1)PVPTK;AVT(1)PVPTK ;;;;; 146.11 0.0015343 26490800000 26907400 30473800 18112500 8401540 23723600 25409400 27415400 25755000 23042100 28920600 TRUE FALSE FALSE 25021330.21 28058945.1 25126145.07 19559209.71 20747964.87 22274646.57 20555776.95 19891148.73 25039407.78 21678693.52 1.154189951 1.294309783 1.159024876 0.90223194 0.957067125 1.027490266 0.948201834 0.917543703 1.155023838 1 24.36977448 -5.099026344 4.932298174 0.983018871 1.225205395 0.646153548 0.074015837 0.123317829 4.733321493 0.019623462 0.035401888 7.96E-06 5.099026344 0.242186524 AVT(ph)PVPTKTEEVSNLK ddPTM_HeLa_A485_30min_R1 5 AVTPVPTKTEEVSNLK 16 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 AVT(1)PVPTKTEEVSNLK;AVT(0.987)PVPT(0.013)KTEEVSNLK;AVT(0.999)PVPT(0.001)KTEEVSNLK;AVT(0.977)PVPT(0.022)KT(0.001)EEVSNLK;AVT(0.997)PVPT(0.002)KT(0.001)EEVSNLK ;;;; 177.61 4.39E-13 17472310000 11863225 11655519 8062281 15683618 20031581 17474030 26895360 31578990 12677361 22592180 TRUE FALSE FALSE 14502158.47 13018530.56 11044854.24 16540374.34 18037166.46 18388943.19 21148946.62 23834193.19 15221591.07 16960365.3 0.855061681 0.767585504 0.651215587 0.975236915 1.063489267 1.084230372 1.246962919 1.405287726 0.897480142 1 24.01566391 -5.621961816 2.016760056 1.152551363 0.759201197 0.558523985 0.139987585 0.224956841 1.864956213 0.046384474 0.066895237 2.39E-06 5.621961816 -0.393350166 AVT(ph)PVPTKTEEVSNLK ddPTM_HeLa_A486_30min_R1 3 AVTPVPTKTEEVSNLK 16 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 AVT(0.996)PVPT(0.003)KTEEVSNLK;AVT(0.993)PVPT(0.006)KT(0.001)EEVSNLK;AVT(0.987)PVPT(0.013)KTEEVSNLK ;; 155.86 2.55E-08 8843430000 8030985 7177146 4631022 4179144 9570270 7907998 11759370 12388480 5763055 9431670 TRUE FALSE FALSE 7468054.424 6608402.812 6424277.741 9729258.434 8369877.497 6932389.609 8817051.248 9567893.543 6262601.248 7069918.442 1.056314084 0.934721223 0.908677772 1.37614861 1.18387186 0.980547324 1.24712206 1.353324458 0.885809546 1 22.75326214 -5.221339074 24.99268743 1.16022252 0.963386 0.219396951 0.154185123 734.0906464 457524.2802 0.041140225 0.071256048 6.01E-06 5.221339074 -0.19683652 AVT(ph)PVSQGSNSSSADPK ddPTM_HeLa_A485_30min_R1 2 AVTPVSQGSNSSSADPK 17 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 AVT(1)PVSQGSNSSSADPK;AVT(0.977)PVS(0.023)QGSNSSSADPK ; 161.91 3.87E-11 334650000 146630 141554 106468 211880 187771 172519 223590 219250 135028 270060 TRUE FALSE FALSE 179247.3376 158107.5089 145854.9437 223454.4679 169075.8599 181551.8281 175818.1699 165478.5937 162126.881 202739.0121 0.884128495 0.779857351 0.719422188 1.102177946 0.833958192 0.895495278 0.867214297 0.816214857 0.799682702 1 17.6292642 -11.5584333 2.207178919 3.458225382 0.856141004 0.16868898 0.096319159 5775935.458 383712.9633 72359033.26 0.025688779 2.76E-12 11.5584333 -2.602084378 AVT(ph)PVSQGSNSSSADPK ddPTM_HeLa_A486_30min_R1 2 AVTPVSQGSNSSSADPK 17 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 AVT(1)PVSQGSNSSSADPK;AVT(1)PVSQGSNSSSADPK ; 199.65 2.54E-24 408620000 199657 188646 123954 89888 200549 203611 234060 231450 157782 264230 TRUE FALSE FALSE 185662.0753 173697.0039 171952.3084 209263.8067 175394.2744 178491.545 175495.7124 178753.8875 171458.6708 198065.0882 0.937379106 0.876969311 0.868160613 1.056540598 0.885538567 0.901176208 0.886050712 0.902500734 0.865668313 1 17.59561508 AVT(ph)TPGK ddPTM_HeLa_A486_30min_R1 2 AVTTPGK 7 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 AVT(0.5)T(0.5)PGK;AVT(0.501)T(0.499)PGK ; 134.26 0.0078171 1501030000 4444400 2710400 2872300 2379300 2781100 6664000 4483100 3814500 4589300 6931000 TRUE FALSE FALSE 4132870.511 2495618.033 3984531.483 5539130.643 2432268.505 5841863.435 3361380.963 2946021.62 4987104.219 5195432.487 0.795481516 0.480348467 0.766929701 1.066153907 0.468155156 1.124422933 0.646987709 0.56704069 0.959901651 1 22.30881242 -14 0.165897489 1.915901376 0.697446632 0.109285542 0.217519477 321.1339456 2.996920852 96.9547234 0.827417756 1.00E-14 14 -1.218454743 AVTEQGAELSNEER ddPTM_HeLa_A485_30min_R1 1 AVTEQGAELSNEER 14 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 0 235.21 1.24E-29 74108000 4982.5 6168.4 7662.7 6681.2 9716.5 7916.9 8237.1 8167 6841.3 9890.2 FALSE FALSE TRUE 6090.839936 6889.740722 10497.4516 7046.177038 8749.091143 8331.416642 6477.176294 6164.030445 8214.286158 7424.755156 0.820342194 0.927941808 1.413844818 0.949011367 1.178367631 1.122113318 0.872375743 0.830199827 1.106337648 1 12.85812774 -6.756146615 24.9689362 0.938078288 1.077455869 0.100871348 0.166851735 272.9033515 1287444.765 0.066215535 0.049738077 1.75E-07 6.756146615 0.139377582 AVTEQGHELSNEER ddPTM_HeLa_A485_30min_R1 4 AVTEQGHELSNEER 14 0 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2 P31946-2 YWHAB "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed" 0 0 ;;; ;;; 252.66 6.16E-41 1663573000 664420 921815 1069695 638804 1174063 932281 1072298 1191073 933556 916947 FALSE FALSE TRUE 812217.9368 1029613.246 1465419.694 673700.245 1057169.165 981093.7916 843192.7724 898960.4792 1120912.126 688368.9881 1.179916514 1.495728691 2.128828753 0.978690581 1.535759431 1.425244031 1.224913944 1.305928208 1.62835942 1 19.39282258 -5.293047413 24.99955968 1.324522258 1.590915789 0.179989844 0.291478392 1236.35391 977859.5716 0.08119599 0.120446759 5.09E-06 5.293047413 0.26639353 AVTEQGHELSNEER ddPTM_HeLa_A486_30min_R1 5 AVTEQGHELSNEER 14 0 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2 P31946-2 YWHAB "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed" 0 0 ;;;; ;;;; 230.86 8.45E-28 1696156000 740293.1 856048 880480.7 226000.4 1272821 783917 900962 921089 767625.3 789901 FALSE FALSE TRUE 688402.3766 788211.6388 1221426.407 526140.3526 1113171.922 687205.2908 675531.7782 711377.1419 834163.6791 592104.6482 1.162636332 1.331203261 2.06285563 0.888593518 1.880025642 1.160614585 1.140899299 1.201438199 1.408811232 1 19.17549265 AVTIANS(ph)PSKPSEK ddPTM_HeLa_A485_30min_R1 4 AVTIANSPSKPSEK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVTIANS(0.5)PS(0.5)KPSEK;AVTIANS(0.954)PS(0.045)KPSEK;AVTIANS(0.963)PS(0.037)KPSEK;AVTIANS(0.844)PS(0.156)KPSEK ;;; 160.55 4.09E-12 5230270000 3204700 2308800 1649560 4499030 2577990 2486450 3839230 2954360 2259390 6013350 TRUE FALSE FALSE 3917574.459 2578794.076 2259800.888 4744800.617 2321316.264 2616636.677 3018947.147 2229798.578 2712828.849 4514332.513 0.867808131 0.57124593 0.500583615 1.051052532 0.514210297 0.579628698 0.668747182 0.493937602 0.60093687 1 22.10608126 -10.02152745 5.023692 1.000004314 0.644819366 0.276987801 0.169569587 8.05E-06 1.57E-06 0.161392206 0.039142884 9.52E-11 10.02152745 -0.355184949 AVTIANS(ph)PSKPSEK ddPTM_HeLa_A486_30min_R1 4 AVTIANSPSKPSEK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVTIANS(0.998)PS(0.001)KPSEK;AVT(0.01)IANS(0.955)PS(0.035)KPSEK;AVTIANS(0.867)PS(0.132)KPS(0.001)EK;AVTIANS(0.978)PS(0.022)KPSEK ;;; 206.98 2.33E-22 3143800000 3528380 3500470 1432080 1529640 2359080 3614130 4294130 3712280 2576010 5043820 TRUE FALSE FALSE 3281058.783 3223080.009 1986619.728 3561079.224 2063182.189 3168255.386 3219693.255 2867074.883 2799300.621 3780814.642 0.867817942 0.852482947 0.525447534 0.941881462 0.545697788 0.837982204 0.851587174 0.75832199 0.740396154 1 21.85026569 -10.39287014 6.73528347 1.000018974 0.767007255 0.221708792 0.129751164 3.50E-05 3.16E-06 0.118999943 0.028859378 4.05E-11 10.39287014 -0.233011718 AVTIANS(ph)PSKPSEKDSVVSLESQK ddPTM_HeLa_A485_30min_R1 1 AVTIANSPSKPSEKDSVVSLESQK 24 2 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVTIANS(0.803)PS(0.197)KPSEKDSVVSLESQK 324.91 2.34E-106 2375300000 834850 505210 325700 1207700 902390 997030 1538500 1667000 691740 1822700 TRUE FALSE FALSE 1020559.502 564289.9148 446189.9835 1273673.593 812544.8831 1049232.949 1209786.907 1258165.636 830565.873 1368334.434 0.745840693 0.412391811 0.326082551 0.930820391 0.593820387 0.766795692 0.884131011 0.919486936 0.606990405 1 20.38398945 -5.265027798 24.99982277 0.802932022 0.486533696 0.453651516 0.160398857 277.3999201 1932594.948 0.044217687 0.068588939 5.43E-06 5.265027798 -0.316398326 AVTIANS(ph)PSKPSEKDSVVSLESQK ddPTM_HeLa_A486_30min_R1 1 AVTIANSPSKPSEKDSVVSLESQK 24 2 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVT(0.001)IANS(0.639)PS(0.36)KPSEKDSVVSLESQK 232.18 2.85E-39 2512000000 1224100 884870 364450 821760 869020 1165800 2042200 1902600 693480 1978900 TRUE FALSE FALSE 1138296.911 814749.6786 505574.8003 1913098.809 760019.4083 1021975.449 1531219.96 1469419.513 753591.4048 1483370.56 0.767371918 0.549255662 0.34082839 1.289697168 0.512359776 0.688954923 1.032257213 0.990595036 0.5080264 1 20.50044761 -5.223808072 24.99987105 0.845410319 0.552162437 0.24223055 0.24849426 862.9690184 573301.3147 0.066380672 0.114971587 5.97E-06 5.223808072 -0.293247881 AVTIANSPS(ph)KPSEKDSVVSLESQK ddPTM_HeLa_A485_30min_R1 1 AVTIANSPSKPSEKDSVVSLESQK 24 2 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVT(0.005)IANS(0.413)PS(0.55)KPS(0.028)EKDS(0.003)VVSLESQK 71.295 0.0039132 1556900000 512610 320330 194960 763740 504110 456990 919220 844180 379970 1004100 TRUE FALSE FALSE 626638.326 357789.807 267083.817 805461.1823 453919.0384 480917.2898 722821.1377 637143.5314 456226.4937 753796.3491 0.831309845 0.474650491 0.354318268 1.068539511 0.602177284 0.637993657 0.958907719 0.845246242 0.605238397 1 19.52381528 -10.60132421 0.050873838 1.920133832 1.22E-08 0.170681107 0.205567002 413.9976133 3.30776697 88.32900819 42.32060514 2.50E-11 10.60132421 -1.92013382 AVTIFIR ddPTM_HeLa_A485_30min_R1 2 AVTIFIR 7 0 B7ZAR1;E9PCA1;P48643;E7ENZ3;P48643-2 B7ZAR1 CCT5 T-complex protein 1 subunit epsilon 0 0 ; ; 184.16 3.42E-05 214900000 215160 276150 311980 228570 338800 270950 334360 371580 248510 283730 FALSE FALSE TRUE 263021.5997 308443.3403 427394.3846 241056.2003 305067.8824 285136.523 262921.2545 280449.4224 298383.6775 213001.3327 1.234835465 1.448081739 2.006533852 1.13171217 1.432234618 1.338660747 1.234364364 1.316655717 1.400853571 1 17.70050293 AVTIFIR ddPTM_HeLa_A486_30min_R1 2 AVTIFIR 7 0 B7ZAR1;E9PCA1;P48643;E7ENZ3;P48643-2 B7ZAR1 CCT5 T-complex protein 1 subunit epsilon 0 0 ; ; 183.43 3.69E-05 212860000 268210 330590 342950 123181 425820 309550 380820 378440 297710 340690 FALSE FALSE TRUE 249409.864 304392.8444 475749.4245 286771.5932 372409.685 271360.8683 285534.8081 292277.4733 323515.7425 255379.0065 0.976626339 1.19192587 1.862915167 1.122925479 1.458262721 1.062580954 1.118082539 1.144485122 1.266806332 1 17.96228041 -6.271837557 24.61402576 1.127402027 1.334207405 0.163381232 0.229764063 1142.830577 2705239.999 0.081743637 0.07290965 5.35E-07 6.271837557 0.206805378 AVTK(ac)AQK ddPTM_HeLa_A485_30min_R1 3 AVTKAQK 7 1 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ;; AVTK(1)AQK;AVTK(1)AQK;AVTK(1)AQK 186.11 5.95E-05 37384653000 6367854 5830712 4518513.4 13401304 7417623 17457273 29100793 46902539 43470036 74734590 FALSE TRUE FALSE 7784361.153 6512563.048 6190099.538 14133383.3 6679098.409 18371308.82 22883170.84 35399617.77 52194073.49 56104632.1 0.13874721 0.116078883 0.110331345 0.251911166 0.119047183 0.327447274 0.407865982 0.630957132 0.930298828 1 25.74161655 -7.333427344 0.943586109 1.027365589 0.141106505 0.97393272 0.05190211 0.076252813 0.122422075 0.045603498 0.018278958 4.64E-08 7.333427344 -0.886259084 down AVTK(ac)AQK ddPTM_HeLa_A486_30min_R1 2 AVTKAQK 7 1 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; AVTK(1)AQK;AVTK(1)AQK 181.74 9.55E-05 48829000000 29411000 19070100 29800000 12958900 20424300 46221000 29636000 21646400 39120000 34825000 FALSE TRUE FALSE 27349440.78 17558915.82 41339358.07 30168974.11 17862493.84 40518722.96 22220759.34 16717987.26 42510953.1 26104593.33 1.047686912 0.672637018 1.583604753 1.155696001 0.684266314 1.552168327 0.851220284 0.640423202 1.628485553 1 24.63780035 AVTK(ac)AQK(ac)K ddPTM_HeLa_A485_30min_R1 2 AVTKAQKK 8 2 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; AVTK(1)AQK(1)K;AVTK(1)AQK(1)K 176.44 2.40E-06 2484600000 810280 947920 951460 1144140 1703450 2618900 4622600 6974900 5539500 8288800 FALSE TRUE FALSE 990523.9906 1058770.998 1303444.648 1206641.471 1533848.537 2756021.554 3634943.747 5264294.839 6651226.839 6222554.704 0.15918285 0.170150533 0.209470983 0.19391416 0.2464982 0.442908369 0.584156174 0.846002179 1.068890055 1 22.56907558 -6.985313667 1.005169554 1.058448271 0.177227369 0.98639973 0.039896884 0.056051471 0.105518269 0.032386214 0.015411903 1.03E-07 6.985313667 -0.881220901 down AVTK(ac)AQK(ac)K ddPTM_HeLa_A486_30min_R1 2 AVTKAQKK 8 2 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; AVTK(1)AQK(1)K;AVTK(1)AQK(1)K 164.71 2.81E-05 5379800000 4321900 5287400 4316200 1884530 6829100 5940200 6869700 6962600 5511900 6393500 FALSE TRUE FALSE 4018957.128 4868407.168 5987548.232 4387281.079 5972530.599 5207358.52 5150828.4 5377367.972 5989675.93 4792525.985 0.83858849 1.015833233 1.249351229 0.915442314 1.246217677 1.086558223 1.074762748 1.122032095 1.249795191 1 22.19235482 -4.394261439 3.500485853 1.117912823 0.836607561 0.396594544 0.105039833 0.239061007 4.758267738 0.025007392 0.13913069 4.03E-05 4.394261439 -0.281305263 AVTK(ac)VQK ddPTM_HeLa_A485_30min_R1 2 AVTKVQK 7 1 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 1 ; AVTK(1)VQK;AVTK(1)VQK 172.91 0.00072296 4430700000 1925880 1834260 2182040 2925000 3293900 3980000 6435400 7254900 7337800 11592900 FALSE TRUE FALSE 2354285.362 2048760.751 2989267.398 3084785.344 2965947.75 4188386.646 5060424.218 5475624.4 8810429.154 8703003.382 0.270514127 0.235408475 0.343475381 0.354450666 0.340795886 0.481257614 0.581457228 0.629164917 1.012343529 1 23.05308193 -7.273492715 0.749219932 1.039647378 0.286524028 0.941839056 0.064876535 0.13731268 0.146846958 0.058594003 0.027366717 5.33E-08 7.273492715 -0.753123349 down AVTK(ac)VQK ddPTM_HeLa_A486_30min_R1 2 AVTKVQK 7 1 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 1 ; AVTK(1)VQK;AVTK(1)VQK 175.86 0.00014411 6921000000 6134700 7625900 6167900 2379600 8484900 7360500 8494700 8159000 7113200 7680100 FALSE TRUE FALSE 5704689.21 7021595.911 8556276.062 5539829.058 7420644.723 6452436.346 6369236.212 6301373.81 7729777.903 5756952.971 0.990921628 1.219672272 1.486250818 0.962284925 1.288988248 1.120807548 1.106355436 1.094567533 1.342685609 1 22.456874 AVTK(ac)VQK(ac)K ddPTM_HeLa_A485_30min_R1 1 AVTKVQKK 8 2 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 2 AVTK(1)VQK(1)K 115.71 0.0066254 48305000 14793 16210 21933 19793 25676 30526 45917 61588 50472 78273 FALSE TRUE FALSE 18083.65181 18105.61849 30046.92941 20874.24147 23119.60729 32124.29416 36106.45784 46483.44643 60601.26744 58760.98161 0.307749315 0.308123146 0.511341516 0.355239836 0.393451686 0.546694308 0.61446315 0.791059733 1.03131816 1 15.84257088 -7.171027255 0.956472435 1.040884044 0.369498785 0.938097839 0.064142867 0.128727934 0.21181948 0.057168142 0.024569267 6.74E-08 7.171027255 -0.671385259 down AVTK(ac)VQK(ac)K ddPTM_HeLa_A486_30min_R1 2 AVTKVQKK 8 2 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 2 ; AVTK(1)VQK(1)K;AVTK(1)VQK(1)K 162.97 3.23E-09 0 177829 226766 180114 83797 275780 244144 283000 270331 228409 267910 FALSE TRUE FALSE 165364.1054 208796.2363 249858.9644 195083.6509 241189.1009 214023.9956 212190.4067 208782.5326 248207.676 200823.5922 0.823429676 1.039699738 1.244171373 0.971417993 1.200999834 1.065731338 1.056600992 1.039631501 1.235948791 1 17.61556924 -4.307604965 3.817156976 1.101222664 0.807304765 0.452862364 0.09132641 0.185996468 5.029910301 0.021470153 0.139048752 4.92E-05 4.307604965 -0.293917899 AVTK(ac)YTSSK ddPTM_HeLa_A485_30min_R1 2 AVTKYTSSK 9 1 P58876;Q96A08;A0A2R8Y619;P62807;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E 0 1 ; AVTK(1)YTSSK;AVTK(1)YTSSK 207.83 1.40E-11 95570000 114079 147765 128725 127785 166708 166579 194464 222660 151356 212839 FALSE TRUE FALSE 139455.48 165044.8314 176345.7342 134765.571 150109.9662 175300.8189 152915.1778 168052.2859 181731.7609 159782.1543 0.872785078 1.032936576 1.103663516 0.843433183 0.939466405 1.097123891 0.957022882 1.051758794 1.137372078 1 17.28574676 -6.249904103 24.92121548 1.046163414 0.964271529 0.226550286 0.082919469 1301.793372 2812441.636 0.028416867 0.028166548 5.62E-07 6.249904103 -0.081891886 AVTK(ac)YTSSK ddPTM_HeLa_A486_30min_R1 2 AVTKYTSSK 9 1 P58876;Q96A08;A0A2R8Y619;P62807;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E 0 1 ; AVTK(1)YTSSK;AVTK(1)YTSSK 188.87 5.29E-08 87095000 106658 118512 82389 35744 138322 112520 119967 135017 105321 143455 FALSE TRUE FALSE 99181.82498 109120.6775 114292.2273 83213.8384 120972.365 98638.42642 89949.98772 104276.5765 114450.3091 107532.9343 0.922339055 1.014765181 1.062857887 0.773845138 1.124979671 0.917285733 0.836487801 0.969717577 1.064327965 1 16.71441906 -7.625116677 6.59971772 1.030408501 0.952246665 0.097796073 0.097689848 0.528403919 29.26516985 0.066699433 0.024544799 2.37E-08 7.625116677 -0.078161837 AVTPS(ph)SEAK ddPTM_HeLa_A486_30min_R1 1 AVTPSSEAK 9 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 AVT(0.175)PS(0.412)S(0.412)EAK 115.57 0.00067458 876820000 1076300 1123100 705030 465010 1232600 1211400 1467100 1464900 901690 1458900 TRUE FALSE FALSE 1000856.928 1034101.466 978036.4974 1082566.78 1077995.814 1061949.785 1100016.063 1131374.249 979849.2152 1093581.944 0.915209814 0.945609491 0.894342214 0.989927445 0.985747634 0.971074724 1.005883527 1.034558274 0.895999811 1 20.0606299 -5.274036961 24.78547636 0.985284937 0.921109405 0.410989909 0.035518686 633.3638674 1246128.411 0.00964652 0.014422963 5.32E-06 5.274036961 -0.064175532 AVTPVPT(ph)KTEEVSNLK ddPTM_HeLa_A486_30min_R1 2 AVTPVPTKTEEVSNLK 16 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 AVT(0.265)PVPT(0.554)KT(0.178)EEVS(0.002)NLK;AVT(0.145)PVPT(0.818)KT(0.036)EEVS(0.001)NLK ; 145.33 1.73E-07 277730000 193352 176050 110295 94373 229484 184072 276340 314420 133864 240990 TRUE FALSE FALSE 179799.0233 162099.1568 153004.1778 219705.1133 200699.9769 161363.0681 207196.8092 242833.4297 145467.4393 180644.5354 0.99531947 0.897337727 0.846990347 1.216228948 1.111021578 0.893262936 1.14698631 1.344261143 0.805268972 1 17.46279409 -5.247303354 24.71773887 1.085275906 0.911628033 0.193095931 0.149206044 1074.344901 1878555.863 0.040056317 0.068943737 5.66E-06 5.247303354 -0.173647873 AVTT(ph)PGK ddPTM_HeLa_A485_30min_R1 4 AVTTPGK 7 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 AVT(0.06)T(0.94)PGK;AVT(0.132)T(0.868)PGK;AVT(0.341)T(0.659)PGK;AVT(0.247)T(0.753)PGK ;;; 126.07 0.008446 4159450000 8729050 7636020 4072570 13484430 6277550 8706460 10095150 13578990 7143730 16685800 TRUE FALSE FALSE 10670797.06 8528986.114 5579183.117 14221050.27 5652535.08 9162316.783 7938238.733 10248721.41 8577411.085 12526337.14 0.851868901 0.680884286 0.445396212 1.135291994 0.451252031 0.731444211 0.633723861 0.818173844 0.684750138 1 23.57846128 -9.461473426 0.759322188 1.019750001 0.707706096 0.168824223 0.189151925 27.38458703 11.54585232 1.769168921 0.062261277 3.46E-10 9.461473426 -0.312043906 AVTT(ph)PGK ddPTM_HeLa_A486_30min_R1 3 AVTTPGK 7 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 AVT(0.003)T(0.997)PGK;AVT(0.064)T(0.936)PGK;AVT(0.06)T(0.94)PGK ;; 128.86 0.0082318 1973040000 4326550 2456900 2667320 2217370 2477140 6140000 4124520 3480650 4250800 6099700 TRUE FALSE FALSE 4023281.187 2262206.296 3700177.737 5162149.42 2166434.003 5382509.227 3092521.471 2688181.977 4619262.767 4572295.418 0.879925906 0.494763809 0.809260426 1.1290061 0.473817592 1.17720067 0.676360819 0.587928323 1.01027216 1 22.12448719 -14 0.182067957 1.839307221 0.755046758 0.066615143 0.235730695 417.2916516 4.030732905 126.7395455 0.699511212 1.00E-14 14 -1.084260463 AVTTPGK(ac)K ddPTM_HeLa_A485_30min_R1 2 AVTTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; AVTTPGK(1)K;AVTTPGK(1)K 140.09 0.0012647 521920000 450260 557740 563420 576170 886590 1163170 1762010 2628900 1971810 3018800 FALSE TRUE FALSE 550418.7836 622962.8413 771852.5039 607644.7082 798317.9866 1224071.783 1385542.169 1984158.153 2367534.18 2266268.717 0.242874457 0.274884808 0.340582958 0.268125621 0.352260957 0.540126497 0.611375941 0.875517602 1.044683785 1 21.1118875 -6.977646611 0.955687863 1.050277916 0.277917674 0.977735631 0.04449455 0.075637311 0.128754302 0.037138756 0.017980695 1.05E-07 6.977646611 -0.772360242 down AVTTPGK(ac)K ddPTM_HeLa_A486_30min_R1 2 AVTTPGKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; AVTTPGK(1)K;AVTTPGK(1)K 141.52 0.001192 737010000 1667160 1984630 1483940 702230 2305700 2107600 2157900 2322600 1733760 2366400 FALSE TRUE FALSE 1550300.693 1827360.691 2058561.309 1634826.929 2016497.606 1847585.741 1617970.596 1793794.682 1884043.713 1773838.037 0.873980973 1.03017336 1.160512553 0.921632581 1.136799169 1.041575218 0.912129835 1.011250545 1.062128375 1 20.75844286 -4.261964214 9.090583483 1.031683236 0.873327435 0.281128489 0.075164691 0.103637852 185.1305092 0.018517458 0.103602069 5.47E-05 4.261964214 -0.1583558 AVTTVTQSTPVPGPSVPPPEELQVS(ph)PGPR ddPTM_HeLa_A485_30min_R1 2 AVTTVTQSTPVPGPSVPPPEELQVSPGPR 29 0 P51610-2;P51610;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR ; 161.7 4.89E-14 668550000 175847 253910 277870 176376 306160 266720 299110 263970 247790 250090 TRUE FALSE FALSE 214963.5585 283602.5658 380665.6761 186010.9743 275677.6354 280685.0468 235202.705 199230.9436 297519.1801 187747.1656 1.144963003 1.510555778 2.027544197 0.990752503 1.468345126 1.495016161 1.252763014 1.061166186 1.58468001 1 17.5184316 -9.410232775 0.216244074 0.78180411 1.520653828 0.142377399 0.287130112 22.18481367 1.464274669 4.166017787 0.773976597 3.89E-10 9.410232775 0.738849718 AVTTVTQSTPVPGPSVPPPEELQVS(ph)PGPR ddPTM_HeLa_A486_30min_R1 2 AVTTVTQSTPVPGPSVPPPEELQVSPGPR 29 0 P51610-2;P51610;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR ; 150.99 1.51E-09 682570000 266180 332240 336980 100398 365470 265490 362980 357980 293690 308740 TRUE FALSE FALSE 247522.1566 305912.0924 467467.6806 233731.6178 319629.3447 232736.5431 272158.5648 276475.7686 319147.2857 231429.4944 1.069535917 1.321837103 2.019914021 1.009947407 1.381108944 1.005647719 1.175989108 1.194643618 1.379025981 1 17.82021321 AVVGVVAGGGR ddPTM_HeLa_A485_30min_R1 2 AVVGVVAGGGR 11 0 P62917;E9PKZ0;E9PKU4;E9PP36 P62917 RPL8 60S ribosomal protein L8 0 0 ; ; 208.67 2.51E-14 89247000 59350 79968 94915 58804 98850 78426 92851 102170 84049 95072 FALSE FALSE TRUE 72552.20274 89319.56197 130028.0082 62016.31362 89008.14692 82532.26409 73012.62533 77112.6473 100916.8634 71372.30007 1.016531661 1.251459766 1.821827349 0.868912919 1.247096518 1.156362679 1.022982659 1.080428223 1.413949995 1 16.12307665 AVVGVVAGGGR ddPTM_HeLa_A486_30min_R1 2 AVVGVVAGGGR 11 0 P62917;E9PKZ0;E9PKU4;E9PP36 P62917 RPL8 60S ribosomal protein L8 0 0 ; ; 192.31 7.12E-10 62466000 51985 56748 55255 19323.8 72299 53503 56744 50857 47359 56302 FALSE FALSE TRUE 48341.11995 52251.08181 76651.21578 44986.78297 63230.58526 46902.34384 42546.05102 39277.9713 51464.11625 42203.61274 1.14542611 1.238071303 1.816224034 1.065946256 1.498226838 1.111334808 1.008113957 0.930677939 1.219424426 1 15.36507888 -6.424017638 5.330605365 1.03677186 1.35520219 0.349782724 0.205353132 0.258481886 11.10850752 0.072812723 0.063474866 3.77E-07 6.424017638 0.31843033 AVVIVDDR ddPTM_HeLa_A485_30min_R1 2 AVVIVDDR 8 0 Q15233-2;Q15233;H7C367;C9IZL7;P23246;P23246-2 Q15233-2;P23246 NONO;SFPQ "Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich" 0 0 ; ; 140.98 0.00084838 97527000 106831 148807 158715 107073 187377 145650 158940 166591 137127 164502 FALSE FALSE TRUE 130595.1874 166208.6842 217430.2832 112922.1269 168721.088 153276.0088 124981.1706 125734.296 164647.1311 123494.6788 1.057496474 1.345877294 1.760644954 0.914388603 1.366221521 1.241154763 1.012036889 1.018135334 1.333232595 1 16.91408935 -6.238027446 1.11147842 1.096551889 1.326919724 0.126555122 0.227532269 1.012571226 2.606022293 0.12098578 0.111599238 5.78E-07 6.238027446 0.230367835 AVVIVDDR ddPTM_HeLa_A486_30min_R1 1 AVVIVDDR 8 0 Q15233-2;Q15233;H7C367;C9IZL7;P23246;P23246-2 Q15233-2;P23246 NONO;SFPQ "Non-POU domain-containing octamer-binding protein;Splicing factor, proline- and glutamine-rich" 0 0 93.561 0.0094986 0 145450 158440 128240 49960 241400 144540 172000 167970 136170 158480 FALSE FALSE TRUE 135254.7061 145884.6374 177897.9624 116309.4048 211121.361 126708.1244 128963.7808 129726.8978 147973.3252 118795.5765 1.138550021 1.228030889 1.497513356 0.97907185 1.777182007 1.066606419 1.085594132 1.092017915 1.245613091 1 16.85812159 AVVMPLQLIQEQAAS(ph)PNAEIHILK ddPTM_HeLa_A485_30min_R1 2 AVVMPLQLIQEQAASPNAEIHILK 24 0 H3BRB3;Q14807-2;Q14807;I3L306 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 AVVMPLQLIQEQAAS(1)PNAEIHILK;AVVMPLQLIQEQAAS(1)PNAEIHILK ; 303.74 7.28E-90 415850000 261869 267743 241785 278770 363920 320357 379500 408030 257341 356880 TRUE FALSE FALSE 320120.8556 299053.2148 331231.333 293998.4992 327686.847 337130.3972 298416.7248 307960.0027 308986.9782 267916.3839 1.194853599 1.116218465 1.236323543 1.0973517 1.223093721 1.258341846 1.113842761 1.149463121 1.153296315 1 18.03142328 -8.757385828 0.729849599 0.996252507 1.178893404 0.509142614 0.051528453 2.439024258 1.716650012 0.074288674 0.018453805 1.75E-09 8.757385828 0.182640897 AVVMPLQLIQEQAAS(ph)PNAEIHILK ddPTM_HeLa_A486_30min_R1 2 AVVMPLQLIQEQAASPNAEIHILK 24 0 H3BRB3;Q14807-2;Q14807;I3L306 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 AVVMPLQLIQEQAAS(1)PNAEIHILK;AVVMPLQLIQEQAAS(1)PNAEIHILK ; 246.32 2.64E-49 495180000 279710 324300 251590 111964 358230 308160 365140 359580 275060 327990 TRUE FALSE FALSE 260103.7734 298601.2869 349012.3858 260657.8503 313297.453 270142.3523 273778.1099 277711.4836 298902.4223 245859.1691 1.057938064 1.214521663 1.419562211 1.060191699 1.274296395 1.09876867 1.113556639 1.129555121 1.215746491 1 17.90747263 -6.280166495 24.59581073 1.119749527 1.209655875 0.154714521 0.10851297 1393.805714 1830590.25 0.037814432 0.033406032 5.25E-07 6.280166495 0.089906348 AVVPSK(ac)R ddPTM_HeLa_A485_30min_R1 2 AVVPSKR 7 1 P07910;P07910-2;G3V2Q1;G3V4C1;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;G3V575;G3V555;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 1 ; AVVPSK(1)R;AVVPSK(1)R 139.31 0.0055839 228440000 58931 82537 104641 60525 115728 109284 170235 225240 212550 233390 FALSE TRUE FALSE 72039.99764 92188.98417 143352.0604 63831.32749 104205.714 115005.9413 133862.9016 169999.5368 255206.8354 175210.1682 0.411163338 0.526162295 0.818172038 0.364312917 0.594746955 0.65638851 0.764013316 0.970260679 1.456575483 1 17.41872698 -7.220862892 1.702347241 1.221833302 0.560525419 0.728334523 0.161598655 0.194914808 1.040073076 0.117756451 0.047803065 6.01E-08 7.220862892 -0.661307883 AVVPSK(ac)R ddPTM_HeLa_A486_30min_R1 2 AVVPSKR 7 1 P07910;P07910-2;G3V2Q1;G3V4C1;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;G3V575;G3V555;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 1 ; AVVPSK(1)R;AVVPSK(1)R 177.71 8.37E-05 300780000 231930 271510 329700 93348 376070 247090 302590 284280 279020 324090 FALSE TRUE FALSE 215672.9047 249994.5588 457368.6697 217318.8615 328899.7939 216606.548 226878.7815 219555.6498 303205.6783 242935.7545 0.887777532 1.029056259 1.882673345 0.894552809 1.353855033 0.891620702 0.933904447 0.903760133 1.248089969 1 17.89021531 -6.267578617 24.70202392 0.985611895 1.219445964 0.124776987 0.28232138 901.593914 3627668.427 0.098557649 0.089151953 5.40E-07 6.267578617 0.233834069 AVVPSKR ddPTM_HeLa_A485_30min_R1 2 AVVPSKR 7 1 P07910;P07910-2;G3V2Q1;G3V4C1;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;G3V575;G3V555;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 ; ; 67.032 0.0088729 0 174387 241883 196406 173868 231044 239409 255610 323630 208359 233470 FALSE FALSE TRUE 213178.7865 270169.1127 269064.7525 183365.9686 208040.4481 251944.085 200996.8354 244259.2351 250174.7401 175270.2257 1.21628637 1.541443287 1.535142386 1.046190064 1.186969705 1.437460835 1.146782544 1.393615111 1.427365881 1 17.41922141 -10.29408806 4.383876613 0.99973789 1.32592272 0.269173936 0.160998553 0.000426825 6.87E-05 0.161321347 0.039095014 5.08E-11 10.29408806 0.32618483 AVVPSKR ddPTM_HeLa_A486_30min_R1 1 AVVPSKR 7 1 P07910;P07910-2;G3V2Q1;G3V4C1;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;G3V575;G3V555;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 58.981 0.012662 0 139980 105800 113120 56490 196150 124700 140860 132590 118260 141530 FALSE FALSE TRUE 130168.1249 97416.02268 156923.0935 131511.5748 171547.038 109315.7819 105615.3381 102402.1514 128510.872 106089.9668 1.226959804 0.918239732 1.479151122 1.239623113 1.616995868 1.03040641 0.995526168 0.965238792 1.211338602 1 16.6949287 -6.411271411 19.90508107 1.035340865 1.286384618 0.332756145 0.180686579 6.646107552 1170.736816 0.06492401 0.057257391 3.88E-07 6.411271411 0.251043753 AVVQLKPR ddPTM_HeLa_A485_30min_R1 1 AVVQLKPR 8 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 98.523 0.0078533 17150000 34821 47520 56792 23187 101630 28984 56991 39718 50135 52528 FALSE FALSE TRUE 42566.81132 53077.05063 77801.72411 24453.6471 91511.36036 30501.55742 44814.40728 29977.09822 60196.63463 39433.73631 1.07945164 1.345980767 1.972973687 0.620119963 2.320636311 0.773488903 1.136448419 0.760189143 1.526526276 1 15.26714279 AVVQLKPR ddPTM_HeLa_A486_30min_R1 2 AVVQLKPR 8 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 108.09 0.0039852 29197000 122185 64979 80196 18592.5 85021 47680 76366 76378 89208 64600 FALSE FALSE TRUE 113620.4625 59829.82739 111250.0389 43284.27961 74356.87339 41797.72637 57258.41908 58988.39672 96940.62127 48423.73952 2.34637935 1.23554744 2.297427667 0.89386487 1.535545873 0.863166017 1.182445215 1.218171031 2.001923483 1 15.56342688 -5.264626496 24.99702232 1.245194904 1.887361077 0.372547799 0.423653482 313.092417 2455633.946 0.112728748 0.175433872 5.44E-06 5.264626496 0.642166172 AVVQS(ph)PQVTEVL ddPTM_HeLa_A486_30min_R1 1 AVVQSPQVTEVL 12 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 AVVQS(0.998)PQVT(0.002)EVL 97.456 0.0013614 7038900 13786 16527 14491 5019.4 18317 12532 12939 14656 13404 12097 TRUE FALSE FALSE 12819.67259 15217.34033 20102.30328 11685.41687 16019.51106 10985.92926 9701.525345 11319.14874 14565.86951 9067.832462 1.413752696 1.678167345 2.216880756 1.288667045 1.766630684 1.211527595 1.069883612 1.248275019 1.606323184 1 13.14654202 -6.266484127 24.41812619 1.23288665 1.682000603 0.400933592 0.272194052 328.7398286 1591195.003 0.094890401 0.086306494 5.41E-07 6.266484127 0.449113953 AVVS(ph)PPK ddPTM_HeLa_A486_30min_R1 2 AVVSPPK 7 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 AVVS(1)PPK;AVVS(1)PPK ; 64.42 0.028921 755480000 1198390 1253410 665510 616430 1041910 1413550 1541380 1394060 1086180 2018460 TRUE FALSE FALSE 1114389.049 1154085.227 923213.295 1435080.193 911223.9324 1239160.573 1155710.421 1076662.97 1180330.957 1513024.478 0.736530747 0.762767056 0.610177369 0.948484452 0.602253265 0.818995721 0.763841192 0.711596531 0.78011359 1 20.5290039 -13.99998399 0.373697299 4.413464162 0.741472082 0.395541225 0.093762425 545.0314539 4.176337677 1503.777298 0.060740577 1.00E-14 13.99998399 -3.67199208 AVVS(ph)PPKFVFGSESVK ddPTM_HeLa_A485_30min_R1 2 AVVSPPKFVFGSESVK 16 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 0 AVVS(1)PPKFVFGSESVK;AVVS(1)PPKFVFGSESVK ; 119.37 3.59E-05 7136700000 646810 566150 424450 958770 756520 716030 1122580 1219140 545310 1258990 TRUE FALSE FALSE 790690.653 632356.3176 581471.7178 1011145.177 681198.2125 753520.2236 882731.6124 920144.0035 654748.7151 945146.963 0.836579584 0.669056075 0.615218311 1.069828521 0.720732584 0.797251912 0.93396228 0.973545956 0.69274805 1 19.85017915 -1.000000358 0.07076446 1.160140643 0.044061868 0.168094678 0.135821781 420.7074232 2.201255028 5.997531481 46.70012457 0.099999917 1.000000358 -1.116078775 AVVS(ph)PPKFVFGSESVK ddPTM_HeLa_A486_30min_R1 2 AVVSPPKFVFGSESVK 16 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 0 AVVS(1)PPKFVFGSESVK;AVVS(1)PPKFVFGSESVK ; 192.94 1.49E-18 8748300000 1381390 1308490 569540 822990 1173370 1586140 2156740 1943540 996000 2423720 TRUE FALSE FALSE 1284561.695 1204800.487 790081.1408 1915962.312 1026194.993 1390458.173 1617100.84 1501038.369 1082334.082 1816804.736 0.707044444 0.663142529 0.434873999 1.054578004 0.56483505 0.765331654 0.890079604 0.82619686 0.595734952 1 20.79297194 -14 0.085159204 1.820611665 0.496131229 0.201974081 0.166577382 374.3525249 2.231735459 57.74788212 4.64005876 1.00E-14 14 -1.324480436 AVVVS(ph)PK ddPTM_HeLa_A485_30min_R1 3 AVVVSPK 7 0 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK ;; 109.66 0.0030533 1516460000 2877840 2923310 2201920 4603980 3098890 2965690 4582740 4135210 2411480 5513500 TRUE FALSE FALSE 3518005.58 3265165.675 3016501.838 4855483.77 2790353.631 3120968.943 3603600.161 3121043.264 2895441.917 4139085.918 0.849947464 0.788861536 0.728784543 1.173081174 0.674147308 0.754023715 0.87062705 0.754041671 0.699536558 1 21.98088077 AVVVS(ph)PK ddPTM_HeLa_A486_30min_R1 5 AVVVSPK 7 0 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK;AVVVS(1)PK ;;;; 121.73 0.0019076 17280760000 11447770 11021140 5086550 6009920 7764720 10838650 13928700 12283840 7829540 18664600 TRUE FALSE FALSE 10645340.44 10147784.73 7056198.383 13991397.48 6790796.414 9501487.562 10443591.94 9487077.786 8508210.831 13990862.67 0.760878059 0.725315155 0.504343338 1.000038226 0.485373674 0.679120922 0.746458041 0.67809098 0.608126249 1 23.73798159 -11.06956281 2.550573796 1.469887515 0.687705125 0.317575287 0.137415845 29097564.11 9508530.502 79592001.65 0.031987763 8.52E-12 11.06956281 -0.78218239 AVVVS(ph)PKEENK ddPTM_HeLa_A485_30min_R1 1 AVVVSPKEENK 11 1 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 AVVVS(1)PKEENK 55.314 0.01905 334730000 191470 222840 354360 1142400 1130800 364370 963190 836620 460370 2187600 TRUE FALSE FALSE 234061.8409 248899.1995 485452.5101 1204806.419 1018213.582 383447.8498 757396.588 631437.6332 552762.0362 1642271.58 0.142523224 0.15155788 0.295598192 0.733621914 0.620003168 0.23348626 0.461188391 0.384490386 0.336583817 1 20.64726129 -14 0.247266215 4.619918523 0.325773846 0.52135275 0.180604724 165.8457315 1.64918062 303.6785342 0.299745052 1.00E-14 14 -4.294144677 AVVVS(ph)PKEENK ddPTM_HeLa_A486_30min_R1 3 AVVVSPKEENK 11 1 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 AVVVS(1)PKEENK;AVVVS(1)PKEENK;AVVVS(1)PKEENK ;; 106.17 0.00034399 1041220000 550909 891480 817070 2562930 2414020 2318470 4283770 4398980 948530 1854430 TRUE FALSE FALSE 512293.124 820835.8781 1133461.386 5966630.563 2111231.102 2032440.744 3211925.437 3397428.283 1030749.344 1390068.658 0.368538001 0.590500242 0.81539957 4.292327958 1.518796277 1.462115366 2.310623593 2.444072287 0.741509665 1 20.40672471 -5.025699661 24.99299416 2.044295055 0.535375942 0.314559635 0.933711001 781.7668094 760270.8845 0.248536466 0.4326674 9.43E-06 5.025699661 -1.508919113 AWEDYYK(ac)K ddPTM_HeLa_A485_30min_R1 1 AWEDYYKK 8 1 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 1 AWEDYYK(1)K 100.45 0.028884 119690000 136370 195500 160030 51720 447800 61461 270550 162010 126000 332770 FALSE TRUE FALSE 166705.036 218362.0244 219231.7564 54545.33264 403215.4597 64679.00292 212744.7823 122276.7935 151287.0443 249816.5632 0.667309781 0.874089458 0.877570941 0.218341538 1.614046141 0.258905983 0.851603991 0.489466318 0.605592529 1 17.93050961 AWGPGLHGGIVGR ddPTM_HeLa_A485_30min_R1 2 AWGPGLHGGIVGR 13 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 115.91 0.00043258 41193000 43924 67162 72432 46139 93898 54041 65526 66178 48488 68737 FALSE FALSE TRUE 53694.74226 75016.01167 99227.61095 48659.45674 84549.18542 56870.5032 51525.8348 49947.74174 58219.09684 51602.13091 1.040552809 1.453738641 1.922936305 0.942973786 1.638482441 1.102096022 0.998521454 0.967939518 1.128230478 1 15.65514302 -6.431849918 6.549752681 1.02478218 1.405625925 0.323931998 0.262102177 0.294788025 17.81207511 0.091811991 0.080480854 3.70E-07 6.431849918 0.380843745 AWLDEDSNLS(ph)PSPLR ddPTM_HeLa_A485_30min_R1 1 AWLDEDSNLSPSPLR 15 0 Q9C086;B8ZZ93;F8WCL7;J3KQ70;B8ZZH7 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDSNLS(0.999)PS(0.001)PLR 180.74 9.84E-18 45180000 36580 52704 55170 51423 56640 47284 58186 51067 44891 46711 TRUE FALSE FALSE 44717.0948 58867.27434 75579.67882 54232.10828 51000.72272 49759.71713 45754.08576 38542.73818 53900.21194 35066.80735 1.275197207 1.678717818 2.155305388 1.546536807 1.454387399 1.418997647 1.304769074 1.099123105 1.53707212 1 15.09781847 -6.121478588 1.405777039 1.24984648 1.701383234 0.378821572 0.242260833 0.452353752 1.815461443 0.108657306 0.11014157 7.56E-07 6.121478588 0.451536754 AWLDEDSNLSPS(ph)PLR ddPTM_HeLa_A485_30min_R1 3 AWLDEDSNLSPSPLR 15 0 Q9C086;B8ZZ93;F8WCL7;J3KQ70;B8ZZH7 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR ;; 300 2.00E-67 283529000 222037 270422 282797 254353 260141 221906 242975 220463 225031 267258 TRUE FALSE FALSE 271428.3646 302045.5005 387415.3785 268247.6603 234240.4486 233524.655 191061.4063 166394.1036 270192.6576 200635.4991 1.35284317 1.505443961 1.930941335 1.336990022 1.167492541 1.163924909 0.952281162 0.829335309 1.346684205 1 17.61421736 -5.670449292 2.634451297 1.055558431 1.591626034 0.600620773 0.18937836 0.186473124 2.628609838 0.061531581 0.082123983 2.14E-06 5.670449292 0.536067603 AWLDEDSNLSPS(ph)PLR ddPTM_HeLa_A486_30min_R1 4 AWLDEDSNLSPSPLR 15 0 Q9C086;B8ZZ93;F8WCL7;J3KQ70;B8ZZH7 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR;AWLDEDSNLSPS(1)PLR ;;; 317.31 4.40E-78 364936000 421185 535730 403572 128221 433549 386599 394568 401320 375591 382215 TRUE FALSE FALSE 391662.1065 493276.8037 559845.8864 298504.9679 379169.2417 338904.346 295842.9131 309948.1968 408147.5303 286505.8762 1.367029925 1.721698732 1.954046786 1.041880788 1.323425707 1.182887941 1.032589338 1.08182143 1.424569491 1 18.1282052 -5.271628508 24.99429335 1.161760343 1.685002512 0.63443352 0.182784496 420.0776132 1030464.49 0.05132057 0.077107147 5.35E-06 5.271628508 0.523242169 AWLDEDSNLSPS(ph)PLRDLSGGLGGQEEEEEQR ddPTM_HeLa_A485_30min_R1 1 AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQR 31 1 Q9C086;B8ZZ93;F8WCL7;J3KQ70;B8ZZH7 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDS(0.215)NLS(0.148)PS(0.637)PLRDLSGGLGGQEEEEEQR 110.68 4.34E-05 78342000 25620 36479 34508 29103 41190 30380 41571 42940 28657 42314 TRUE FALSE FALSE 31319.08061 40744.90172 47273.9452 30692.8232 37088.97897 31970.64982 32689.01625 32408.89767 34408.19704 31765.89853 0.985934038 1.28266171 1.488197954 0.966219267 1.167572167 1.006445632 1.029060022 1.020241806 1.083180349 1 14.95519121 -5.294069786 24.99850732 1.043394883 1.255304463 0.381712956 0.124296888 652.3856836 499798.2795 0.035087869 0.052047258 5.08E-06 5.294069786 0.21190958 AWLDEDSNLSPS(ph)PLRDLSGGLGGQEEEEEQR ddPTM_HeLa_A486_30min_R1 2 AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQR 31 1 Q9C086;B8ZZ93;F8WCL7;J3KQ70;B8ZZH7 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDS(0.16)NLS(0.144)PS(0.696)PLRDLSGGLGGQEEEEEQR;AWLDEDS(0.133)NLS(0.384)PS(0.483)PLRDLSGGLGGQEEEEEQR ; 82.789 0.0003134 147839000 54591 63967 48248 25918.8 77357 54326 71084 81238 49568 54076 TRUE FALSE FALSE 50764.45281 58898.02196 66930.91773 60340.27626 67654.16373 47623.81047 53298.03135 62741.88081 53864.59415 40535.01762 1.252360447 1.453015822 1.651187582 1.488596276 1.669030081 1.174880714 1.3148639 1.547843926 1.32884102 1 15.30688115 -6.26609006 24.99906514 1.310124787 1.507520571 0.303487026 0.169266843 602.5685629 3239010.797 0.059376648 0.0540556 5.42E-07 6.26609006 0.197395784 AWQTFIIDLLLHCHSK ddPTM_HeLa_A485_30min_R1 2 AWQTFIIDLLLHCHSK 16 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 0 ; ; 96.993 0.00098745 2453200 4993.2 2652.6 4387.8 4442.4 5354.6 2168.8 4554.8 3041.6 3043.52 6832.6 FALSE FALSE TRUE 6103.920114 2962.798495 6011.029812 4685.077063 4821.477223 2282.355014 3581.629771 2295.642831 3654.326547 5129.358565 1.189996768 0.577615789 1.171887232 0.913384589 0.939976639 0.444959148 0.698260752 0.447549689 0.712433436 1 12.32456271 -6.233892784 21.74520846 0.628463817 0.946748675 0.317847481 0.215323169 159.7878315 126135.2902 0.066233353 0.066200289 5.84E-07 6.233892784 0.318284858 AWYKGS(ph)PK ddPTM_HeLa_A486_30min_R1 1 AWYKGSPK 8 1 Q6P4F7-3;Q6P4F7 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 AWY(0.002)KGS(0.998)PK 49.466 0.027266 235580000 364900 312850 148410 213910 310570 348760 506230 444790 235180 625420 TRUE FALSE FALSE 339322.3943 288058.6266 205878.3266 497993.2904 271615.4146 305733.5371 379565.8996 343521.0267 255565.5918 468810.7612 0.723793954 0.614445423 0.439150172 1.062247993 0.579371118 0.652147012 0.809635638 0.732749875 0.545135933 1 18.83864616 -10.74309158 2.633761124 1.065848934 0.687228781 0.257133109 0.160912036 52351850.8 40999598.23 22504494.5 0.041442054 1.81E-11 10.74309158 -0.378620153 AY(ph)S(ph)QS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AYSQSPR 7 0 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 3 0 AY(1)S(1)QS(1)PR;AY(1)S(1)QS(1)PR ; 94.309 0.017113 2878300000 43086 121064 105653 42428 101132 89594 77665 80800 90299 56526 TRUE FALSE FALSE 52670.33206 135221.3817 144738.4413 44745.73421 91062.94298 94285.0033 61071.23829 60983.67331 108421.181 42435.10848 1.241197064 3.186544975 3.410818222 1.054450803 2.145934021 2.221863138 1.439167719 1.437104216 2.554987719 1 15.37297075 -5.26343225 24.99795208 1.741858014 2.670222552 0.254659765 0.715501638 242.18656 3037925.775 0.196121017 0.308016983 5.45E-06 5.26343225 0.928364538 AY(ph)S(ph)QS(ph)PR ddPTM_HeLa_A486_30min_R1 1 AYSQSPR 7 0 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 3 0 AY(1)S(1)QS(1)PR 94.309 0.017113 1613600000 26389 24554 38050 7060 38751 11305 16619 37351 21720 23439 TRUE FALSE FALSE 24539.26737 22608.25162 52783.97901 16436.03679 33890.48824 9910.304041 12460.75042 28846.99267 23602.70709 17569.72184 1.396679333 1.286773452 3.004258093 0.935475072 1.928914331 0.56405583 0.709217285 1.641858245 1.343373976 1 14.10080373 -6.244344828 24.9017129 1.070411937 1.715711538 0.241925826 0.58251364 1239.866847 1806120.883 0.194839389 0.19436955 5.70E-07 6.244344828 0.645299601 AYELALYLR ddPTM_HeLa_A485_30min_R1 1 AYELALYLR 9 0 C9J0J7;G5E9Q6;P35080-2 C9J0J7 PFN2 Profilin;Profilin-2 0 0 116.25 0.0060701 21166000 8876.1 10303 12831 9520.4 13192 10850 12145 14284 8420.7 12472 FALSE FALSE TRUE 10850.55782 11507.84623 17577.72084 10040.47535 11878.55816 11418.08922 9550.121534 10780.8266 10110.65725 9362.95993 1.158881156 1.229082076 1.877367945 1.072361243 1.268675531 1.219495684 1.019989577 1.151433594 1.079856939 1 13.19274897 -6.091118908 1.210199228 1.078585764 1.375762204 0.266058524 0.204777956 0.657353041 2.000953001 0.097649316 0.102640587 8.11E-07 6.091118908 0.297176441 AYFHLLNQIAPK ddPTM_HeLa_A485_30min_R1 1 AYFHLLNQIAPK 12 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2;C9JAM8;Q14651 P13797-3 PLS3;PLS1 Plastin-3;Plastin-1 0 0 118.4 0.00063336 88659000 186830 215890 203740 211680 273860 245410 291700 329450 207000 316600 FALSE FALSE TRUE 228389.6889 241136.4575 279111.9043 223243.5424 246593.5368 258259.2881 229375.912 248651.8709 248543.0013 237677.4466 0.960922848 1.014553383 1.174330625 0.93927104 1.037513405 1.086595686 0.965072266 1.046173604 1.045715548 1 17.85864549 -10.88279876 14.64582861 0.999393267 1.031586918 0.018398248 0.064868494 0.001274043 1.02E-05 0.062266631 0.01482331 1.31E-11 10.88279876 0.032193652 AYFHLLNQIAPK ddPTM_HeLa_A486_30min_R1 1 AYFHLLNQIAPK 12 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2;C9JAM8;Q14651 P13797-3 PLS3;PLS1 Plastin-3;Plastin-1 0 0 143.96 0.00011949 90528000 310440 324930 238900 123450 372010 318550 386720 367280 283170 386240 FALSE FALSE TRUE 288679.7591 299181.3634 331408.478 287397.8388 325349.0369 279250.5398 289958.5657 283658.3617 307715.4036 289522.99 0.997087517 1.033359608 1.14467068 0.992659819 1.123741631 0.964519397 1.00150446 0.979743825 1.062835817 1 18.14331839 -6.281297683 24.98394824 1.000441177 1.058069335 0.234964584 0.051023109 1231.058393 1548804.115 0.017418227 0.015382816 5.23E-07 6.281297683 0.057628158 AYGET(ph)SPHTFQLDLFFNNVSKPSAPVFDR ddPTM_HeLa_A486_30min_R1 1 AYGETSPHTFQLDLFFNNVSKPSAPVFDR 29 1 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 AY(0.007)GET(0.496)S(0.496)PHT(0.002)FQLDLFFNNVSKPSAPVFDR 62.945 0.01488 115030000 32387 38443 29157 22171 45787 36892 55895 46097 37122 49725 TRUE FALSE FALSE 30116.83855 35396.63667 40447.37125 51615.20846 40043.96751 32340.64013 41909.4798 35601.71939 40339.76485 37273.53634 0.807995203 0.949645248 1.08514982 1.384768217 1.074327028 0.867656877 1.124376271 0.955147348 1.082262882 1 15.18586408 -4.496644016 2.984709236 1.075196062 0.813862664 0.298078878 0.127337961 0.371442672 6.094021614 0.035593864 0.175420072 3.19E-05 4.496644016 -0.261333398 AYGSELYGPGRPLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 AYGSELYGPGRPLSPR 16 1 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 1 0 AYGSELYGPGRPLS(1)PR;AYGSELYGPGRPLS(1)PR ; 69.986 0.0043089 526180000 333670 437640 496890 423050 566910 424440 485360 535710 403380 479720 TRUE FALSE FALSE 407893.7404 488818.191 680710.2883 446160.1503 510466.4499 446663.0221 381658.871 404326.2825 484334.666 360134.6326 1.132614593 1.357320698 1.890155033 1.238870439 1.41743227 1.240266783 1.059767199 1.122708693 1.344871118 1 18.45817682 -6.358807256 2.521666028 1.140975729 1.427482263 0.288662381 0.202768732 0.397278647 4.941217556 0.082063281 0.071269924 4.38E-07 6.358807256 0.286506533 AYGSELYGPGRPLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 AYGSELYGPGRPLSPR 16 1 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 1 0 AYGSELYGPGRPLS(1)PR;AYGSELYGPGRPLS(1)PR ; 88.176 0.000562 533840000 445830 637980 531680 195991 721960 516520 600850 626300 482570 566630 TRUE FALSE FALSE 414579.6193 587424.1413 737560.7349 456276.9528 631405.0448 452797.014 450510.9749 483705.162 524399.5561 424742.1599 0.976073624 1.383013501 1.736490522 1.074244556 1.4865608 1.066051494 1.060669313 1.138820696 1.234630337 1 18.69622779 -6.278202185 24.49001407 1.106250328 1.342383203 0.241921817 0.204050144 949.1415709 1386665.984 0.07177673 0.063477819 5.27E-07 6.278202185 0.236132876 AYGVPVKPMT(ph)PK ddPTM_HeLa_A485_30min_R1 2 AYGVPVKPMTPK 12 1 H3BT74;F8W872;Q15131-4;Q15131-3;Q15131-2;Q15131 H3BT74 CDK10 Cyclin-dependent kinase 10 1 0 AYGVPVKPMT(1)PK;AYGVPVKPMT(1)PK ; 133.14 2.59E-05 2128520000 2075720 1709620 1015750 3898810 2242600 2201560 3975650 3530330 1646970 5756460 TRUE FALSE FALSE 2537456.753 1909545.187 1391518.194 4111792.118 2019318.87 2316830.277 3126219.899 2664511.032 1977501.772 4321480.462 0.587173024 0.441872919 0.322000344 0.95147766 0.467274789 0.536119577 0.7234141 0.616573662 0.457598221 1 22.04309421 -14 0.305105988 4.660631972 0.548974584 0.373407526 0.166494302 311.4522392 2.858953462 731.4460189 0.163778182 1.00E-14 14 -4.111657387 AYGVPVKPMT(ph)PK ddPTM_HeLa_A486_30min_R1 2 AYGVPVKPMTPK 12 1 H3BT74;F8W872;Q15131-4;Q15131-3;Q15131-2;Q15131 H3BT74 CDK10 Cyclin-dependent kinase 10 1 0 AYGVPVKPMT(1)PK;AYGVPVKPMT(1)PK ; 119.31 0.00018407 1608210000 4130900 3675200 1527370 2552300 2991000 4810200 6568800 5785200 3059500 8688200 TRUE FALSE FALSE 3841345.242 3383963.767 2118808.568 5941883.386 2615840.89 4216766.431 4925216.762 4468036.25 3324699.923 6512618.169 0.589831177 0.519601131 0.325338982 0.912364771 0.40165734 0.647476379 0.756257566 0.686058377 0.510501282 1 22.63480621 -14 0.162249369 2.49365355 0.492771129 0.370475016 0.160424783 141.7964285 1.310584592 68.30336515 0.643472031 1.00E-14 14 -2.000882421 AYHLQK ddPTM_HeLa_A485_30min_R1 1 AYHLQK 6 0 P61927;D6R9X9;D6RG19 P61927 RPL37 60S ribosomal protein L37;Ribosomal protein L37 0 0 100.78 0.0098353 19792000 42440 57061 44188 44407 64144 58540 68804 75874 55618 64068 FALSE FALSE TRUE 51880.63158 63733.78759 60534.98002 46832.84197 57757.59814 61605.06388 54103.46332 57265.78253 66780.02244 48097.02668 1.078666087 1.325108681 1.258601294 0.973715949 1.200855897 1.280849735 1.124881662 1.190630409 1.388443882 1 15.55366009 -5.973808158 24.99947409 1.20842435 1.166659949 0.015894078 0.129197021 1198.47254 1143907.595 0.040130601 0.045502614 1.06E-06 5.973808158 -0.041764401 AYHLSCLGLGK(ac)RPFGK ddPTM_HeLa_A486_30min_R1 1 AYHLSCLGLGKRPFGK 16 2 O96028;O96028-4;O96028-2 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 0 1 AYHLSCLGLGK(1)RPFGK 83.499 0.0058893 6152100 6941.9 10696 11545 3211.4 13865 8137.2 9051.1 10038 9139.9 6933.1 FALSE TRUE FALSE 6455.308658 9848.410006 16015.53319 7476.301495 12125.92241 7133.314997 6786.419047 7752.566528 9932.153891 5197.006633 1.242120535 1.895015862 3.081684192 1.438578402 2.333251287 1.372581469 1.305832285 1.491736893 1.911129731 1 12.34346519 -6.277695469 23.92350783 1.440088073 2.021512742 0.242599064 0.512368797 718.5741254 1057495.829 0.180496926 0.159734218 5.28E-07 6.277695469 0.581424668 AYILVT(ph)PLK ddPTM_HeLa_A485_30min_R1 2 AYILVTPLK 9 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 AYILVT(1)PLK;AYILVT(1)PLK ; 143.24 0.0005426 651690000 1108250 1080430 920890 1391020 1566740 1135410 1611680 1723370 1053620 1969830 TRUE FALSE FALSE 1354776.389 1206776.89 1261565.532 1467007.9 1410749.864 1194858.312 1267331.402 1300710.805 1265071.87 1478787.633 0.916139924 0.816058278 0.853107981 0.992034196 0.953990846 0.807998583 0.857007033 0.879579174 0.85547907 1 20.49598345 -11.62597317 1.998779841 3.121990917 0.880998859 0.294150832 0.055176698 3771918.087 198013.0947 36264533.09 0.015113495 2.37E-12 11.62597317 -2.240992058 AYILVT(ph)PLK ddPTM_HeLa_A486_30min_R1 1 AYILVTPLK 9 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 AYILVT(1)PLK 135.99 0.00087845 375110000 731840 809820 503070 320250 733060 771030 947310 828920 645190 959160 TRUE FALSE FALSE 680541.7952 745646.9139 697872.1767 745558.1845 641112.7793 675908.1579 710283.0184 640193.0112 701115.5887 718980.0929 0.946537744 1.03708979 0.970641863 1.03696638 0.891697539 0.940093007 0.987903595 0.890418271 0.975152992 1 19.4555923 -5.752579156 24.9999844 0.943710552 0.998674205 0.247953131 0.042561418 244.7765595 690657.3521 0.011893299 0.015119649 1.77E-06 5.752579156 0.054963653 AYLGYQAVPSGSSGSLSTSSSS(ph)SPPGTPSPADAK ddPTM_HeLa_A485_30min_R1 1 AYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAK 34 0 P17676-3;P17676-2;P17676 P17676-3 CEBPB CCAAT/enhancer-binding protein beta 1 0 AYLGYQAVPSGSSGSLSTS(0.002)S(0.005)S(0.029)S(0.579)S(0.385)PPGTPSPADAK 146.83 1.42E-09 160940000 227770 254280 198220 268870 286530 262050 348790 352590 239290 397730 TRUE FALSE FALSE 278436.6507 284015.8341 271549.8266 283557.6873 258002.0671 275770.5328 274268.1671 266116.7497 287313.3081 298583.2307 0.932526083 0.951211605 0.909461077 0.949677203 0.8640876 0.923596855 0.918565207 0.891264888 0.96225534 1 18.18777362 -7.985114636 5.256484469 0.999888291 0.918119082 0.541596861 0.024618802 0.108024074 9.431691772 0.023629102 0.00615182 1.03E-08 7.985114636 -0.08176921 AYPQS(ph)PK ddPTM_HeLa_A485_30min_R1 3 AYPQSPK 7 0 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 AYPQS(1)PK;AYPQS(1)PK;AYPQS(1)PK ;; 133.32 0.0016301 1067470000 1690770 1578290 1278090 2559480 2244920 1822210 2794670 2902420 1549910 3345240 TRUE FALSE FALSE 2066875.953 1762857.286 1750908.677 2699297.911 2021407.882 1917618.098 2197565.924 2190596.944 1860962.72 2511333.233 0.823019393 0.701960721 0.697202846 1.07484657 0.804914241 0.763585682 0.875059469 0.872284457 0.741025801 1 21.26002204 -14 0.227647047 1.925837779 0.799253402 0.204544562 0.105307222 275.4739687 2.758510768 117.9492865 0.194304783 1.00E-14 14 -1.126584377 AYPQS(ph)PK ddPTM_HeLa_A486_30min_R1 4 AYPQSPK 7 0 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 AYPQS(1)PK;AYPQS(1)PK;AYPQS(1)PK;AYPQS(1)PK ;;; 129.63 0.0016888 2070070000 4028980 3888660 2104560 2359960 3691400 4200390 5574350 5220600 2870640 6361230 TRUE FALSE FALSE 3746569.308 3580508.419 2919501.994 5494106.146 3228390.191 3682188.588 4179588.671 4031983.345 3119469.387 4768336.603 0.785718295 0.750892547 0.612268436 1.152206021 0.677047461 0.772216581 0.876529704 0.845574396 0.654204945 1 22.18505465 -11.44295366 2.185576626 2.895226659 0.796079719 0.158252636 0.143718576 11067216.71 557381.8525 104658923.6 0.034906787 3.61E-12 11.44295366 -2.09914694 AYQHGGVTGLS(ph)QY ddPTM_HeLa_A485_30min_R1 4 AYQHGGVTGLSQY 13 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 0 AYQHGGVTGLS(1)QY;AYQHGGVTGLS(1)QY;AYQHGGVTGLS(0.999)QY(0.001);AYQHGGVTGLS(1)QY ;;; 146.84 8.25E-08 1653400000 1845570 2147910 2152220 1574150 2412560 1892270 2522920 2625570 1554840 1977760 TRUE FALSE FALSE 2256110.679 2399089.39 2948415.739 1660141.829 2172357.055 1991346.331 1983877.532 1981644.841 1866882.126 1484740.83 1.519531647 1.615830414 1.985811719 1.118135768 1.463122056 1.341208035 1.336177663 1.334673905 1.257379125 1 20.50177969 -5.325038274 0.143592103 0.837224163 2.197123304 0.476538039 0.18860318 16.22989789 0.60853131 1.34853112 4.745727426 4.73E-06 5.325038274 1.359899141 AYQHGGVTGLS(ph)QY ddPTM_HeLa_A486_30min_R1 4 AYQHGGVTGLSQY 13 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 0 AYQHGGVTGLS(1)QY;AYQHGGVTGLS(1)QY;AYQHGGVTGLS(1)QY;AYQHGGVTGLS(1)QY ;;; 127.66 2.61E-05 1449770000 1241320 1816300 1812460 524980 1852550 1433510 1723560 1651400 1225580 1330920 TRUE FALSE FALSE 1154309.878 1672369.773 2514293.051 1222179.971 1620185.905 1256658.111 1292307.058 1275412.27 1331814.261 997648.9692 1.157030092 1.676310832 2.520218162 1.225060125 1.624003988 1.259619515 1.295352472 1.27841787 1.334952776 1 19.92817276 -5.907846604 1.570327267 1.254511064 1.738546817 0.246365502 0.354440425 0.557791397 2.835789576 0.139056513 0.166625498 1.24E-06 5.907846604 0.484035753 AYQQKPYPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 AYQQKPYPSPK 11 1 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 0 AYQQKPYPS(1)PK;AYQQKPYPS(1)PK ; 92.063 0.0012171 1959400000 1971460 1481950 893510 3487600 2035680 1915690 3511700 3188700 1438230 4536600 TRUE FALSE FALSE 2410004.476 1655251.161 1224056.531 3678118.757 1833000.551 2015992.566 2761396.607 2406666.325 1726869.569 3405709.11 0.707636618 0.486022472 0.359413118 1.079986176 0.538214067 0.591945026 0.810813994 0.706656455 0.507051399 1 21.69952379 -14 0.27903269 3.534172848 0.62289436 0.22965283 0.192119216 350.6553465 3.369941646 515.2170088 0.224090331 1.00E-14 14 -2.911278488 AYQQKPYPS(ph)PK ddPTM_HeLa_A486_30min_R1 3 AYQQKPYPSPK 11 1 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 0 AYQQKPYPS(1)PK;AYQQKPYPS(1)PK;AYQQKPYPS(1)PK ;; 119.87 9.08E-05 2550600000 3277570 2803430 1088697 2432750 2533330 3833130 5332370 4506650 1977240 6652890 TRUE FALSE FALSE 3047829.268 2581275.997 1510269.635 5663564.944 2215576.129 3360237.393 3998154.626 3480584.174 2148628.755 4986963.041 0.611159386 0.517604798 0.302843559 1.135674136 0.444273621 0.673804351 0.801721327 0.697936629 0.430849144 1 22.24973008 -11.65751098 2.107974585 9.999952495 0.630042926 0.20710298 0.220433171 9554673.614 185094.5184 416244019.1 0.053784742 2.20E-12 11.65751098 -9.369909568 AYRPPS(ph)GEK ddPTM_HeLa_A485_30min_R1 6 AYRPPSGEK 9 1 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK ;;;;; 138.45 7.52E-05 5311330000 2728340 2472420 1870390 3585640 2520690 2411720 3232850 2800340 2169350 4428550 TRUE FALSE FALSE 3335249.82 2761548.012 2562325.094 3781514.434 2269721.253 2537993.93 2542125.188 2113552.224 2604718.647 3324593.986 1.003205153 0.830642185 0.7707182 1.137436466 0.682706298 0.763399663 0.764642299 0.635732433 0.783469698 1 21.66474673 AYRPPS(ph)GEK ddPTM_HeLa_A486_30min_R1 6 AYRPPSGEK 9 1 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK;AYRPPS(1)GEK ;;;;; 107.97 0.00050409 5870280000 3493090 3622540 1957540 1477230 2865850 3746380 4227770 3791230 2780570 5001150 TRUE FALSE FALSE 3248242.429 3335476.737 2715551.913 3439066.095 2506388.37 3284189.726 3169937.229 2928049.691 3021592.046 3748829.488 0.866468438 0.889738183 0.72437328 0.917370637 0.66857892 0.876057376 0.845580531 0.781057047 0.806009464 1 21.83800878 -10.20985611 6.051962041 1.000002999 0.818484047 0.351532521 0.073547194 2.80E-06 3.66E-07 0.067086418 0.016270577 6.17E-11 10.20985611 -0.181518952 AYRPPS(ph)GEKWSK ddPTM_HeLa_A485_30min_R1 1 AYRPPSGEKWSK 12 2 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 AYRPPS(1)GEKWSK 107.34 0.0002276 922400000 596350 700640 597160 777910 1146600 1009500 1417400 1729500 724780 1032300 TRUE FALSE FALSE 729006.0001 782573.7532 818074.3339 820405.2535 1032440.478 1062355.859 1114560.911 1305337.413 870236.6979 774966.6081 0.940693434 1.009816094 1.055625269 1.058633037 1.332238663 1.370840818 1.438205078 1.684378913 1.122934445 1 19.56377462 -5.745546621 2.907689261 1.373434868 1.006668673 0.412922543 0.176094611 0.224673235 3.90025239 0.054743699 0.06914653 1.80E-06 5.745546621 -0.366766195 AYS(ph)FCGTVEYMAPEVVNR ddPTM_HeLa_A485_30min_R1 10 AYSFCGTVEYMAPEVVNR 18 0 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32-2;Q9UK32 E9PGT3;B1AXG1 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 0 AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR ;;;;;;;;; 389.47 2.06E-145 4187103000 1476078 1414333 1577484 1681574 2053576 1383645 1850965 1734734 1417982 2237737 TRUE FALSE FALSE 1804426.459 1579726.941 2161060.976 1773434.13 1849114.763 1456090.513 1455491.207 1309287.767 1702557.981 1679910.348 1.074120688 0.940363837 1.286414467 1.055671888 1.100722288 0.866766797 0.866410049 0.779379547 1.013481453 1 20.67995281 -6.259126413 24.85349932 0.888993941 1.091907213 0.452487591 0.101658455 165.7434507 1780966.684 0.033916035 0.032363599 5.51E-07 6.259126413 0.202913272 AYS(ph)FCGTVEYMAPEVVNR ddPTM_HeLa_A486_30min_R1 9 AYSFCGTVEYMAPEVVNR 18 0 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32-2;Q9UK32 E9PGT3;B1AXG1 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 0 AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(0.982)FCGT(0.008)VEY(0.01)MAPEVVNR ;;;;;;;; 311.08 3.95E-89 4962700000 2330926 3002833 2455064 1124883 3226613 2789151 3189565 3294875 2515033 2735169 TRUE FALSE FALSE 2167540.124 2764877.577 3405730.53 2618784.472 2821901.111 2445053.908 2391502.101 2544703.889 2733038.085 2050264.879 1.057200046 1.348546524 1.661117334 1.277290802 1.376359288 1.192555134 1.166435676 1.241158601 1.333017072 1 20.96737888 -6.26377545 24.11608523 1.200443348 1.358249819 0.193666736 0.158103123 230.0760579 2375141.607 0.055519564 0.051302286 5.45E-07 6.26377545 0.157806471 AYS(ph)FCGTVEYMAPEVVNRR ddPTM_HeLa_A485_30min_R1 4 AYSFCGTVEYMAPEVVNRR 19 1 B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32-2;Q9UK32 B1AXG1 RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 0 AYS(0.996)FCGT(0.004)VEYMAPEVVNRR;AYS(0.994)FCGT(0.006)VEYMAPEVVNRR;AYS(1)FCGTVEYMAPEVVNRR;AYS(0.996)FCGT(0.004)VEYMAPEVVNRR ;;; 234.22 1.17E-45 1106100000 86860.6 127126 107692.2 89240.7 140832 112137.3 173546 179017 96446.5 131806 TRUE FALSE FALSE 106182.4408 141992.2799 147532.0262 94115.69347 126810.2716 118008.6356 136466.4794 135112.8001 115802.4279 98949.18991 1.073100658 1.435001944 1.490987712 0.951151733 1.281569578 1.192618512 1.379157116 1.365476566 1.170322142 1 16.59440028 -8.029228782 7.303766168 1.000011218 1.274366701 0.222496609 0.156118862 0.411553762 95.51270775 0.150868698 0.039050448 9.35E-09 8.029228782 0.274355483 AYS(ph)FCGTVEYMAPEVVNRR ddPTM_HeLa_A486_30min_R1 4 AYSFCGTVEYMAPEVVNRR 19 1 B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32-2;Q9UK32 B1AXG1 RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 0 AY(0.001)S(0.992)FCGT(0.007)VEYMAPEVVNRR;AYS(0.999)FCGT(0.001)VEYMAPEVVNRR;AYS(1)FCGTVEYMAPEVVNRR;AYS(1)FCGTVEYMAPEVVNRR ;;; 238.79 8.76E-46 1039969000 150098 135804 129956 83056.9 188118 146284 183583 189022 102942 166467 TRUE FALSE FALSE 139576.9053 125042.3965 180278.4435 193360.6607 164522.4863 128236.9674 137648.5917 145985.8169 111865.0954 124782.5797 1.118560825 1.002082156 1.444740476 1.549580568 1.318473193 1.027683253 1.103107437 1.169921453 0.896480067 1 16.92905701 -6.261129285 24.99012744 1.054037839 1.294261942 0.378305241 0.157776244 35.93287309 2895857.885 0.059929749 0.056450836 5.48E-07 6.261129285 0.240224103 AYS(ph)GSDLPSSSSGGANGTAGGGGGAR ddPTM_HeLa_A485_30min_R1 2 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AYS(0.983)GS(0.005)DLPS(0.011)SSSGGANGTAGGGGGAR;AYS(0.5)GS(0.5)DLPSSSSGGANGTAGGGGGAR ; 377.95 2.26E-157 1479740000 300640 360231 322642 352467 427762 390220 473440 513540 399790 559520 TRUE FALSE FALSE 367516.3308 402356.8819 442000.7021 371721.3797 385172.5133 410651.3158 372285.6764 387593.5098 480024.1859 420041.9612 0.874951469 0.957896875 1.052277493 0.88496249 0.916985799 0.977643554 0.886305919 0.9227495 1.142800554 1 18.68017393 -7.745587379 24.9988833 1.071400283 0.936579695 0.460036248 0.059403436 181.9386208 286923.2518 0.039844044 0.014949733 1.80E-08 7.745587379 -0.134820588 AYS(ph)GSDLPSSSSGGANGTAGGGGGAR ddPTM_HeLa_A486_30min_R1 3 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AYS(0.499)GS(0.499)DLPS(0.001)SSSGGANGTAGGGGGAR;AYS(0.999)GS(0.001)DLPSSSSGGANGTAGGGGGAR;AY(0.027)S(0.929)GS(0.044)DLPSSSSGGANGTAGGGGGAR ;; 399.1 2.13E-173 728730000 333827 390063 331207 133123 434153 373942 430817 387990 327460 385560 TRUE FALSE FALSE 310427.4512 359152.9873 459459.2204 309917.0717 379697.4824 327808.838 323022.0299 299653.1468 355844.4965 289013.2664 1.074094124 1.242686856 1.589751315 1.072328186 1.313771811 1.13423457 1.117671981 1.036814505 1.231239316 1 18.14077619 -6.388614689 4.378316253 1.102374424 1.265488037 0.219553496 0.146239071 0.376986953 11.70500926 0.053345029 0.046468082 4.09E-07 6.388614689 0.163113612 AYS(ph)NSIVR ddPTM_HeLa_A485_30min_R1 4 AYSNSIVR 8 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 0 AYS(0.959)NS(0.041)IVR;AYS(0.996)NS(0.004)IVR;AYS(0.915)NS(0.085)IVR;AYS(0.741)NS(0.259)IVR ;;; 129.39 0.00056145 1619030000 959910 1265850 1260570 1121190 1494770 1358010 1492340 1500230 1089990 1416770 TRUE FALSE FALSE 1173438.668 1413880.146 1726907.3 1182437.771 1345945.45 1429113.304 1173489.368 1132296.24 1308740.995 1063595.313 1.103275516 1.329340332 1.623650724 1.111736538 1.26546764 1.343662657 1.103323185 1.064593109 1.230487742 1 20.02051789 -6.768595831 24.37529212 1.104983689 1.302799798 0.304052991 0.145408151 162.0735861 552023.8072 0.061008916 0.042136489 1.70E-07 6.768595831 0.197816109 AYS(ph)NSIVR ddPTM_HeLa_A486_30min_R1 4 AYSNSIVR 8 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 0 AYS(1)NSIVR;AYS(0.999)NS(0.001)IVR;AYS(0.86)NS(0.14)IVR;AYS(0.919)NS(0.081)IVR ;;; 129.39 0.00056145 1899870000 1221190 1387500 1147400 417334 1565880 1264420 1447110 1445990 1281800 1467020 TRUE FALSE FALSE 1135590.887 1277549.447 1591704.008 971574.6429 1369472.729 1108428.716 1085027.772 1116769.643 1392907.456 1099668.643 1.032666426 1.161758548 1.447439661 0.88351582 1.245350349 1.007966102 0.986686106 1.015551048 1.266661066 1 20.06863744 -5.276701254 24.99278355 1.061364395 1.208735285 0.193648614 0.145639015 1361.273478 2229212.265 0.040417098 0.060200745 5.29E-06 5.276701254 0.14737089 AYS(ph)PEYR ddPTM_HeLa_A485_30min_R1 8 AYSPEYR 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR ;;;;;;; 129.42 0.001692 12688360000 9613030 10831670 10807320 10929300 14456610 10213170 12477920 11385930 11440920 14506340 TRUE FALSE FALSE 11751415.36 12098339.58 14805397.4 11526339.98 13017259.15 10747915.79 9811910.457 8593512.815 13737007.7 10890176.41 1.079084022 1.110940643 1.359518601 1.058416278 1.195321238 0.986936794 0.900987283 0.789106851 1.26141278 1 23.37652399 -6.302711475 6.399481586 0.96799409 1.163281982 0.283476798 0.135740115 0.260390505 30.049113 0.047173161 0.042002957 4.98E-07 6.302711475 0.195287892 AYS(ph)PEYR ddPTM_HeLa_A486_30min_R1 8 AYSPEYR 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AYS(0.999)PEY(0.001)R;AYS(1)PEYR;AYS(1)PEYR;AYS(1)PEYR;AY(0.001)S(0.999)PEYR ;;;;;;; 153.24 0.00072288 17534630000 16483980 20962640 17729810 6396616 22576040 19447370 20344180 20946770 17547670 17901570 TRUE FALSE FALSE 15328538.13 19301484.06 24595267.25 14891645.32 19744342.55 17048151.22 15253850.99 16177647.74 19068716.16 13418900.35 1.142309558 1.43838046 1.832882472 1.109751539 1.471383052 1.270458142 1.136743741 1.205586696 1.421034188 1 23.67776312 -6.438183697 4.743056933 1.207015703 1.408322206 0.17885262 0.209510545 0.420766488 16.4837906 0.076548427 0.066127829 3.65E-07 6.438183697 0.201306503 AYS(ph)PEYRR ddPTM_HeLa_A485_30min_R1 5 AYSPEYRR 8 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AYS(1)PEYRR;AYS(1)PEYRR;AYS(1)PEYRR;AY(0.024)S(0.976)PEYRR;AYS(1)PEYRR ;;;; 147.41 0.00017091 13957330000 2719660 4619300 3837920 2271900 5061240 4522450 5350640 7302640 3273930 3055560 TRUE FALSE FALSE 3324638.984 5159486.952 5257726.317 2396008.144 4557325.175 4759238.489 4207432.053 5511656.09 3930977.721 2293865.125 1.449361145 2.249254717 2.292081718 1.044528781 1.986745046 2.074768231 1.834210742 2.40278124 1.713691741 1 21.12934914 -8.022348485 23.65384508 0.99999997 1.92497679 0.334396995 0.387828506 1058.980691 1120835.265 0.371295572 0.095868104 9.50E-09 8.022348485 0.92497682 AYS(ph)PEYRR ddPTM_HeLa_A486_30min_R1 4 AYSPEYRR 8 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AYS(1)PEYRR;AYS(1)PEYRR;AYS(1)PEYRR;AY(0.024)S(0.973)PEY(0.002)RR ;;; 123.75 0.00037117 10088600000 2778650 2893640 2645240 1229290 4565980 2472280 3490640 3707590 2127410 2962030 TRUE FALSE FALSE 2583880.984 2664337.428 3669547.77 2861849.245 3993272.212 2167275.23 2617244.952 2863452.693 2311815.612 2220318.408 1.163743441 1.199979885 1.652712402 1.288936413 1.798513311 0.976110103 1.1787701 1.289658583 1.041209046 1 21.08233515 -6.301395821 24.99879487 1.120354517 1.414071849 0.39143949 0.200632818 624.5228718 390731.6159 0.070960592 0.06258217 5.00E-07 6.301395821 0.293717333 AYS(ph)QEEITQGFEETGDTLYAPYSTHFQLQNQPPQK ddPTM_HeLa_A485_30min_R1 2 AYSQEEITQGFEETGDTLYAPYSTHFQLQNQPPQK 35 0 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 AY(0.114)S(0.837)QEEIT(0.05)QGFEETGDTLYAPYSTHFQLQNQPPQK;AY(0.003)S(0.997)QEEITQGFEETGDTLYAPYSTHFQLQNQPPQK ; 120.8 1.14E-05 188780000 81423.3 72780 43114.5 56400.3 67460.6 70997 100238.1 90486.1 66592.5 145881.5 TRUE FALSE FALSE 99535.63218 81290.9879 59064.34769 59481.30558 60743.9858 74714.29314 78821.41107 68294.2421 79957.00393 109515.9268 0.908869012 0.742275487 0.539321991 0.543129272 0.554658921 0.682223082 0.719725554 0.623601006 0.730094757 1 16.74078117 -8.147042974 3.854499964 0.999975105 0.657826932 0.469295246 0.106623942 0.807886253 19.66167267 0.110597472 0.029087312 7.13E-09 8.147042974 -0.342148172 AYSGS(ph)DLPSSSSGGANGTAGGGGGAR ddPTM_HeLa_A485_30min_R1 2 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AYS(0.001)GS(0.999)DLPSSSSGGANGTAGGGGGAR;AYS(0.013)GS(0.987)DLPSSSSGGANGTAGGGGGAR ; 462.18 5.26E-252 1651280000 387320 426890 434800 428440 536890 533470 630320 654200 472050 715930 TRUE FALSE FALSE 473477.9978 476811.0721 595650.6135 451844.5923 483435.3465 561401.6643 495646.9828 493756.4243 566786.1051 537461.8267 0.880951863 0.887153372 1.108265897 0.840700809 0.899478479 1.044542396 0.922199416 0.918681848 1.054560672 1 19.03580277 -7.759165086 24.99806571 1.027280351 0.940275417 0.177257561 0.077002987 101.4546936 1115251.9 0.057664369 0.019418657 1.74E-08 7.759165086 -0.087004934 AYSGS(ph)DLPSSSSGGANGTAGGGGGAR ddPTM_HeLa_A486_30min_R1 3 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AYS(0.051)GS(0.949)DLPSSSSGGANGTAGGGGGAR;AYS(0.002)GS(0.998)DLPSSSSGGANGTAGGGGGAR;AYS(0.014)GS(0.986)DLPSSSSGGANGTAGGGGGAR ;; 441.87 2.07E-229 2095210000 445220 579520 468800 178430 535810 518820 563340 542060 435600 501730 TRUE FALSE FALSE 414012.3771 533596.7246 650331.9149 415394.0574 468603.7136 454813.2634 422386.3736 418644.7711 473358.1587 376093.5423 1.100822882 1.418787255 1.729175968 1.104496649 1.245976495 1.209308888 1.12308861 1.113140014 1.258618151 1 18.52073201 -5.357810525 24.90120173 1.160640762 1.41673603 0.371631091 0.157892594 50.00881568 12916.18532 0.044563844 0.066098859 4.39E-06 5.357810525 0.256095268 AYSS(ph)PSTTPEAR ddPTM_HeLa_A485_30min_R1 1 AYSSPSTTPEAR 12 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 0 AYS(0.032)S(0.803)PS(0.158)T(0.007)TPEAR 185.9 5.51E-13 548140000 527260 669200 668380 457830 809380 529450 647520 686280 626490 640500 TRUE FALSE FALSE 644547.168 747457.1187 915641.5756 482840.0936 728795.2853 557171.1833 509172.0622 517968.754 752220.7965 480835.1375 1.340474349 1.554497707 1.904273428 1.004169737 1.515686414 1.158757212 1.058932725 1.077227335 1.564404799 1 18.8751828 -5.271253786 24.99500742 1.206172435 1.595223426 0.399929792 0.225845914 682.517121 1738211.015 0.062798991 0.094457757 5.35E-06 5.271253786 0.389050992 AYSS(ph)PSTTPEAR ddPTM_HeLa_A486_30min_R1 3 AYSSPSTTPEAR 12 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 0 AYS(0.012)S(0.402)PS(0.188)T(0.396)T(0.002)PEAR;AYS(0.005)S(0.446)PS(0.187)T(0.329)T(0.032)PEAR;AYS(0.015)S(0.901)PS(0.029)T(0.047)T(0.007)PEAR ;; 175.57 5.17E-11 1030540000 1096100 1434640 1364660 457589 1677350 1283080 1425210 1463380 1162300 1143080 TRUE FALSE FALSE 1019269.05 1320953.902 1893092.899 1065290.317 1466961.122 1124786.635 1068607.384 1130200.319 1263049.1 856845.3278 1.189560143 1.541648018 2.209375295 1.243270264 1.712048925 1.312706738 1.247141519 1.319024896 1.474068958 1 19.70867528 -6.328617783 7.219484971 1.287410256 1.593143292 0.22714776 0.283264032 0.44874296 42.13889568 0.100326608 0.088475823 4.69E-07 6.328617783 0.305733036 AYSSFGGGRGS(ph)R ddPTM_HeLa_A485_30min_R1 4 AYSSFGGGRGSR 12 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 1 0 AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R ;;; 101.75 0.00043126 5024300000 739665 930700 953720 745187 1246730 920330 1234920 1305840 1014540 1111220 TRUE FALSE FALSE 904200.9274 1039537.269 1306540.716 785894.6789 1122601.184 968517.0557 971069.2536 985580.6925 1218148.872 834213.3045 1.083896556 1.246128854 1.566195011 0.942078812 1.345700407 1.160994497 1.164053904 1.181449262 1.460236687 1 19.6700568 -5.269289162 24.99761484 1.192322468 1.293479015 0.082975299 0.17814385 1808.167856 5758102.346 0.048795642 0.073835515 5.38E-06 5.269289162 0.101156547 AYSSFGGGRGS(ph)R ddPTM_HeLa_A486_30min_R1 5 AYSSFGGGRGSR 12 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 1 0 AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R;AYSSFGGGRGS(1)R ;;;; 137.81 1.97E-05 5033630000 1771120 2052100 1696000 691341 2420880 1877210 2239910 2651350 1546370 2072830 TRUE FALSE FALSE 1646973.634 1889484.122 2352736.62 1609476.786 2117230.657 1645618.916 1679460.827 2047695.484 1680410.597 1553779.876 1.059978739 1.216056503 1.514202016 1.035846075 1.362632307 1.059106854 1.08088723 1.317880039 1.081498494 1 20.5673507 -6.279691037 24.87806942 1.126055326 1.240680654 0.151815245 0.150365264 1744.953414 2378466.645 0.052335239 0.046248606 5.25E-07 6.279691037 0.114625328 AYSSPST(ph)TPEAR ddPTM_HeLa_A485_30min_R1 1 AYSSPSTTPEAR 12 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 0 AYS(0.008)S(0.266)PS(0.266)T(0.452)T(0.008)PEAR 142.76 1.10E-06 543770000 494970 703450 689790 485330 818270 693410 728040 747880 607980 638300 TRUE FALSE FALSE 605074.3689 785712.3583 944972.0256 511842.349 736800.1657 729715.8754 572488.3065 564461.2574 729996.0093 479183.557 1.26271939 1.639689732 1.972046018 1.068155076 1.537615711 1.522831626 1.194716092 1.17796458 1.523416233 1 18.87021888 -8.047195693 0.228537209 0.889259236 1.639118605 0.244458381 0.247893009 4.677435476 0.841761693 1.264937131 0.760383583 8.97E-09 8.047195693 0.749859369 AYSSPST(ph)TPEAR ddPTM_HeLa_A486_30min_R1 1 AYSSPSTTPEAR 12 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 0 AYS(0.007)S(0.26)PS(0.26)T(0.464)T(0.01)PEAR 160.86 1.52E-09 503250000 579760 726620 713600 296710 929910 677900 815010 859340 574860 659240 TRUE FALSE FALSE 539121.8179 669039.9849 989925.0309 690755.8749 813272.0167 594267.5904 611085.8777 663687.0413 624689.3277 494162.0131 1.090981912 1.35388793 2.003239838 1.397832809 1.645759883 1.202576432 1.236610386 1.343055564 1.264138706 1 18.91462459 -6.275215007 24.33403512 1.23242555 1.512781539 0.274311821 0.232976988 831.3399611 1468520.243 0.084189404 0.07465494 5.31E-07 6.275215007 0.280355988 AYT(ph)HQVVTR ddPTM_HeLa_A485_30min_R1 8 AYTHQVVTR 9 0 D6REC6;D6R9G1;D6RAD4;P50613 D6REC6 CDK7 Cyclin-dependent kinase 7 1 0 AY(0.001)T(0.999)HQVVTR;AYT(1)HQVVTR;AYT(1)HQVVTR;AYT(1)HQVVTR;AYT(1)HQVVTR;AYT(1)HQVVTR;AYT(1)HQVVTR;AY(0.001)T(0.999)HQVVTR ;;;;;;; 166.11 4.58E-05 12754010000 6682940 7666730 6694970 9082320 10048280 7212590 10243660 8613140 6631390 10939270 TRUE FALSE FALSE 8169536.947 8563287.382 9171718.004 9578464.144 9047837.962 7590230.06 8055018.358 6500753.91 7962249.146 8212311.311 0.994791434 1.042737794 1.116825417 1.166354243 1.101740742 0.924250162 0.980846689 0.791586396 0.969550331 1 22.96935689 -6.264555794 24.13460807 0.923195851 1.088514802 0.548405755 0.068270342 127.374554 986427.2832 0.024318636 0.022363409 5.44E-07 6.264555794 0.165318952 AYT(ph)HQVVTR ddPTM_HeLa_A486_30min_R1 6 AYTHQVVTR 9 0 D6REC6;D6R9G1;D6RAD4;P50613 D6REC6 CDK7 Cyclin-dependent kinase 7 1 0 AYT(1)HQVVTR;AY(0.001)T(0.999)HQVVTR;AY(0.001)T(0.999)HQVVTR;AY(0.003)T(0.997)HQVVTR;AYT(1)HQVVTR;AYT(1)HQVVTR ;;;;; 128.85 0.00032795 15642100000 8376370 10109630 7184420 4192420 10291910 10565790 12342320 11515860 7564850 10988800 TRUE FALSE FALSE 7789229.719 9308506.1 9966419.829 9760165.633 9001002.68 9262290.255 9254140.992 8893950.067 8220577.289 8237132.955 0.945623891 1.130066268 1.209937958 1.184898397 1.092734903 1.124455597 1.123466265 1.079738559 0.997990118 1 22.97371084 -7.628238302 2.634770627 0.994978132 1.121982139 0.323422735 0.066220634 0.335527494 4.344353799 0.059675557 0.018434519 2.35E-08 7.628238302 0.127004007 AYT(ph)PPPPLGPHPNLGK ddPTM_HeLa_A485_30min_R1 4 AYTPPPPLGPHPNLGK 16 0 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 AYT(1)PPPPLGPHPNLGK;AYT(1)PPPPLGPHPNLGK;AY(0.008)T(0.992)PPPPLGPHPNLGK;AY(0.016)T(0.984)PPPPLGPHPNLGK ;;; 135.29 1.11E-05 2116200000 3062760 2775690 2082660 4385880 4096790 3334080 4928990 4832890 2760210 5617790 TRUE FALSE FALSE 3744060.396 3100282.8 2853122.601 4625469.519 3688899.203 3508647.273 3875871.02 3647616.15 3314158.829 4217378.341 0.887769627 0.735120862 0.676515686 1.096764185 0.874690129 0.831949849 0.919023789 0.864901333 0.78583389 1 22.00791502 -11.51076826 0.018639249 1.939359032 6.85E-06 0.116156787 0.109303592 5489.041035 12.44205979 768.9056403 541.8547735 3.08E-12 11.51076826 -1.939352186 AYT(ph)PPPPLGPHPNLGK ddPTM_HeLa_A486_30min_R1 4 AYTPPPPLGPHPNLGK 16 0 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 AYT(1)PPPPLGPHPNLGK;AYT(1)PPPPLGPHPNLGK;AYT(1)PPPPLGPHPNLGK;AYT(1)PPPPLGPHPNLGK ;;; 155.79 2.77E-08 2470080000 4590400 4713930 2399400 2198760 4425260 5131380 6365400 6223500 3693990 6785000 TRUE FALSE FALSE 4268636.665 4340381.019 3328511.938 5118824.399 3870202.627 4498322.508 4772709.594 4806544.908 4014188.027 5085991.837 0.839292866 0.853399132 0.654446968 1.006455489 0.76095337 0.884453348 0.938402921 0.945055569 0.789263561 1 22.27809772 -6.151930685 0.812578296 0.918347646 0.80762773 0.164962476 0.096730578 1.215254422 1.764644072 0.060177679 0.064358248 7.05E-07 6.151930685 -0.110719916 AYT(ph)PVVVTLWYR ddPTM_HeLa_A485_30min_R1 2 AYTPVVVTLWYR 12 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12 P21127 CDK11B Cyclin-dependent kinase 11B 1 0 AYT(1)PVVVTLWYR;AYT(1)PVVVTLWYR ; 259.6 1.07E-32 3742500000 1145980 1111710 1147820 1607870 1737890 1210290 1461050 1532320 1150020 2082080 TRUE FALSE FALSE 1400899.297 1241714.814 1572446.383 1695703.867 1564859.569 1273658.913 1148884.732 1156516.117 1380818.465 1563055.774 0.896256756 0.794414911 1.006007853 1.084864594 1.001154019 0.814851865 0.735024784 0.739907134 0.883409593 1 20.57593783 -6.274026332 22.86014207 0.812156962 0.957410092 0.252719865 0.101175939 317.7881757 577156.4917 0.037670063 0.033500886 5.32E-07 6.274026332 0.14525313 AYT(ph)PVVVTLWYR ddPTM_HeLa_A486_30min_R1 2 AYTPVVVTLWYR 12 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12 P21127 CDK11B Cyclin-dependent kinase 11B 1 0 AYT(1)PVVVTLWYR;AYT(0.999)PVVVT(0.001)LWYR ; 199.8 2.46E-16 5250200000 1264600 1560030 1029410 710430 1695920 1497910 1861580 1576190 1254070 1687770 TRUE FALSE FALSE 1175958.07 1436407.541 1428025.121 1653916.943 1483201.9 1313113.094 1395792.994 1217325.945 1362773.797 1265141.406 0.929507219 1.135373116 1.128747437 1.307298089 1.172360569 1.037918044 1.103270344 0.962205441 1.077171129 1 20.27086722 -6.271796289 23.00245231 1.037948143 1.143959884 0.215458927 0.093146938 385.9090624 857090.2036 0.034099259 0.030464445 5.35E-07 6.271796289 0.106011742 AYT(ph)PVVVTQWYR ddPTM_HeLa_A485_30min_R1 1 AYTPVVVTQWYR 12 0 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 AYT(1)PVVVTQWYR 185.32 2.80E-12 415720000 221720 191310 201430 314450 285760 182180 333390 241810 196950 398560 TRUE FALSE FALSE 271040.8491 213682.0403 275947.3392 331627.6073 257308.731 191718.6631 262158.503 182505.7184 236476.0585 299206.327 0.905866035 0.71416284 0.922264385 1.108357603 0.859970889 0.640757383 0.876179677 0.609966107 0.790344445 1 18.19078116 -6.01166845 24.68646833 0.763256483 0.909794257 0.159802187 0.136347664 791.6513311 1674867.415 0.043768526 0.046247966 9.73E-07 6.01166845 0.146537775 AYT(ph)PVVVTQWYR ddPTM_HeLa_A486_30min_R1 2 AYTPVVVTQWYR 12 0 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 AYT(1)PVVVTQWYR;AYT(1)PVVVTQWYR ; 190.34 1.59E-12 1112750000 754560 1039180 661900 399950 847060 1103440 1225430 1014840 820220 1201360 TRUE FALSE FALSE 701669.2406 956831.5922 918205.4063 931103.8124 740813.8363 967308.7918 918814.4527 783783.0858 891317.33 900531.6365 0.779172227 1.062518576 1.019625929 1.03394903 0.822640545 1.074153036 1.020302248 0.87035597 0.989767926 1 19.78041743 AYTNFDAER ddPTM_HeLa_A485_30min_R1 2 AYTNFDAER 9 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 223.19 6.90E-17 119959000 129036 171133 138378 135476 149648 169276 209520 198898 172555 226770 FALSE FALSE TRUE 157739.613 191145.5157 189569.7806 142876.7108 134748.5197 178139.0296 164754.3404 150117.9536 207185.2057 170240.4124 0.926569731 1.122797537 1.113541596 0.83926436 0.791518992 1.04639684 0.967774561 0.881799753 1.217015413 1 17.37721403 -9.818762151 16.48199651 0.999999993 0.984797927 0 0.128904584 0 0 0.127312632 0.030877849 1.52E-10 9.818762151 -0.015202067 AYTPSK(ac)R ddPTM_HeLa_A485_30min_R1 2 AYTPSKR 7 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 0 1 ; AYTPSK(1)R;AYTPSK(1)R 152.47 0.0041491 50641000 46516 63401 75079 54793 81262 58428 65472 71183 74184 83004 FALSE TRUE FALSE 56863.32372 70815.19543 102853.8464 57786.20285 73171.26995 61487.19973 51483.37234 53725.25764 89072.04834 62312.63038 0.912548923 1.136450107 1.650609929 0.927359389 1.174260652 0.986753398 0.826210867 0.86218889 1.429438106 1 15.927237 AYTT(ph)GSPGSR ddPTM_HeLa_A485_30min_R1 1 AYTTGSPGSR 10 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 AYT(0.044)T(0.624)GS(0.332)PGSR 124.46 0.00057945 205000000 222080 249750 237480 211850 341220 250030 264170 327290 243640 271600 TRUE FALSE FALSE 271480.9298 278956.09 325333.7344 223422.8291 307246.9387 263121.1842 207727.9214 247021.6143 292536.3132 203895.1184 1.331473416 1.368135207 1.595593543 1.095773311 1.506887174 1.290473191 1.018797914 1.211513136 1.434739171 1 17.63746771 -6.52709132 24.83524161 1.17970961 1.377522527 0.270967054 0.164353613 164.23576 968234.1815 0.061030548 0.047479161 2.97E-07 6.52709132 0.197812917 AYTTGS(ph)PGSR ddPTM_HeLa_A485_30min_R1 1 AYTTGSPGSR 10 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 AYT(0.013)T(0.013)GS(0.973)PGSR 125.72 0.0001113 223840000 281980 328240 319350 263380 374280 265360 341540 355080 290320 344230 TRUE FALSE FALSE 344705.4782 366624.8127 437490.8543 277767.7825 337015.369 279253.8393 268567.1889 267996.0733 348584.561 258419.7961 1.333897338 1.418717986 1.692946364 1.074870373 1.304139134 1.080620926 1.039267088 1.037057057 1.348908119 1 17.97935707 -5.279171812 24.97875569 1.129819664 1.475540316 0.585040647 0.137128309 553.0475761 779048.1569 0.038545114 0.057313028 5.26E-06 5.279171812 0.345720652 AYTTGS(ph)PGSR ddPTM_HeLa_A486_30min_R1 2 AYTTGSPGSR 10 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 AYT(0.001)T(0.011)GS(0.988)PGSR;AYT(0.358)T(0.261)GS(0.381)PGSR ; 137.55 3.25E-05 443530000 570380 634000 572000 224420 705520 581650 655070 642490 536540 650440 TRUE FALSE FALSE 530399.3074 583759.531 793493.7187 522461.1016 617027.1029 509891.9368 491164.5574 496209.0525 583047.7192 487565.5903 1.087852215 1.197294359 1.627460457 1.071570906 1.265526352 1.045791473 1.007381503 1.017727794 1.195834429 1 18.89523679 -6.104732639 1.830709915 1.049635647 1.274681732 0.278505996 0.153560712 0.464480088 3.097019157 0.060958546 0.06229276 7.86E-07 6.104732639 0.225046085 CAAPRPPS(ph)SSPEQR ddPTM_HeLa_A486_30min_R1 1 CAAPRPPSSSPEQR 14 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 CAAPRPPS(0.613)S(0.252)S(0.135)PEQR 119.54 0.00057154 0 110890 100330 73515 43751 116560 102700 127800 126390 92278 127120 TRUE FALSE FALSE 103117.1836 92379.4854 101981.9768 101854.5391 101939.9579 90029.91818 95823.08827 97613.75607 100276.7313 95288.32459 1.082159688 0.969473289 1.0702463 1.068908909 1.069805334 0.944815837 1.005612059 1.02440416 1.052350661 1 16.54001184 CAAPRPPSS(ph)SPEQR ddPTM_HeLa_A485_30min_R1 3 CAAPRPPSSSPEQR 14 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 CAAPRPPS(0.113)S(0.444)S(0.444)PEQR;CAAPRPPS(0.05)S(0.475)S(0.475)PEQR;CAAPRPPS(0.084)S(0.458)S(0.458)PEQR ;; 161.82 9.42E-07 2417600000 760812 1083458 999836 914443 1410919 843627 1192181 1308384 913783 1213845 TRUE FALSE FALSE 930052.0046 1210158.988 1369716.943 964396.7056 1270442.95 887798.0052 937461.7901 987500.7725 1097170.866 911255.7807 1.020626727 1.328012413 1.503109195 1.058316146 1.394167233 0.974257749 1.028758127 1.083670242 1.204020748 1 19.79749654 -6.268321281 24.98201099 1.061534311 1.266785161 0.324706308 0.145995781 672.1151368 2439839.376 0.050564133 0.045564587 5.39E-07 6.268321281 0.205250851 CAAPRPPSS(ph)SPEQR ddPTM_HeLa_A486_30min_R1 1 CAAPRPPSSSPEQR 14 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 CAAPRPPS(0.083)S(0.459)S(0.459)PEQR 142.91 4.88E-08 1084200000 366900 416050 352690 109280 463940 351760 373360 385200 343390 331890 TRUE FALSE FALSE 341182.2047 383080.6828 489261.0134 254409.3627 405748.3191 308363.4276 279941.379 297498.3689 373155.3217 248782.5838 1.371407112 1.539821144 1.966620838 1.022617254 1.630935385 1.23948961 1.125245083 1.195816702 1.499925421 1 17.92452597 -5.859237364 1.092452716 1.220373518 1.572566164 0.239732174 0.251722957 0.741171659 1.88924259 0.112523129 0.15212874 1.38E-06 5.859237364 0.352192645 CAAPRPPSSS(ph)PEQR ddPTM_HeLa_A485_30min_R1 1 CAAPRPPSSSPEQR 14 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 CAAPRPPS(0.001)S(0.221)S(0.777)PEQR 134.82 5.79E-06 1515200000 384960 452970 374190 468200 684750 435630 644020 529300 429540 634090 TRUE FALSE FALSE 470593.0239 505940.9012 512618.4523 493776.5805 616573.8857 458438.9132 506419.8658 399488.3451 515744.738 476023.0326 0.988592971 1.062849624 1.076877414 1.037295565 1.295260615 0.96306036 1.063855804 0.839220621 1.083444923 1 18.86067186 CAAPRPPSSS(ph)PEQR ddPTM_HeLa_A486_30min_R1 2 CAAPRPPSSSPEQR 14 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 CAAPRPPS(0.014)S(0.057)S(0.929)PEQR;CAAPRPPS(0.012)S(0.08)S(0.908)PEQR ; 143.14 4.82E-08 2116240000 976630 913290 720820 429840 1077390 930420 1187360 1263120 869840 1197480 TRUE FALSE FALSE 908173.2803 840917.5743 999940.8082 1000689.243 942253.6999 815634.2402 890269.9694 975535.1497 945238.4316 897623.2137 1.011753335 0.936826902 1.113987242 1.114821038 1.049720735 0.908659923 0.991808095 1.08679804 1.053045885 1 19.77575046 CALQNS(ph)PR ddPTM_HeLa_A485_30min_R1 1 CALQNSPR 8 0 E9PKY2;A0A0C4DFM7;Q5TAX3;X6R5G7;E9PRG2;Q5TAX3-2 E9PKY2 ZCCHC11 Terminal uridylyltransferase 4 1 0 CALQNS(1)PR 110.38 0.0012103 149220000 230940 377940 332050 296600 410010 288430 382020 418530 284460 397090 TRUE FALSE FALSE 282311.8063 422136.7954 454889.1128 312802.507 369187.9648 303531.7488 300398.3062 315884.8613 341548.5128 298102.7709 0.947028454 1.416078066 1.525947281 1.049310968 1.238458682 1.018211766 1.007700483 1.059650872 1.145740819 1 18.18545026 -5.743409819 1.732652024 1.056258976 1.292823514 0.245460746 0.159874746 0.474601241 2.945992967 0.057030054 0.077019102 1.81E-06 5.743409819 0.236564538 CALQNS(ph)PR ddPTM_HeLa_A486_30min_R1 1 CALQNSPR 8 0 E9PKY2;A0A0C4DFM7;Q5TAX3;X6R5G7;E9PRG2;Q5TAX3-2 E9PKY2 ZCCHC11 Terminal uridylyltransferase 4 1 0 CALQNS(1)PR 91.549 0.0036934 188800000 192670 220890 181690 62226 237960 176520 210500 209790 171500 185450 TRUE FALSE FALSE 179164.8279 203385.8719 252045.2338 144865.2727 208112.8379 154742.7571 157830.6736 162025.3967 186365.7581 139012.1129 1.288843283 1.463080214 1.813117062 1.042105394 1.4970842 1.113160241 1.135373531 1.165548766 1.340644021 1 17.08485107 CALSSPSLAFT(ph)PPIK ddPTM_HeLa_A485_30min_R1 1 CALSSPSLAFTPPIK 15 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 CALSSPS(0.006)LAFT(0.994)PPIK 85.457 0.002963 0 48524 49378 36509 66423 63777 52340 88056 89409 33179 76691 TRUE FALSE FALSE 59317.99639 55152.32757 50015.19837 70051.5203 57427.13795 55080.44147 69242.11625 67481.30256 39837.72096 57573.34509 1.030303108 0.957948986 0.868721425 1.216735282 0.997460506 0.956700386 1.202676623 1.172092788 0.691947305 1 15.81311342 -3.882883488 17.8006669 1.017514403 2.586721693 0 0.152956551 5281.061476 869047.345 0.036332055 27856.38074 0.000130953 3.882883488 1.56920729 CALSSPSLAFT(ph)PPIK ddPTM_HeLa_A486_30min_R1 3 CALSSPSLAFTPPIK 15 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 CALSSPS(0.009)LAFT(0.991)PPIK;CALSSPS(0.015)LAFT(0.985)PPIK;CALSSPS(0.012)LAFT(0.988)PPIK ;; 133.66 3.51E-05 90391000 347700 367700 209485 179886 384430 466210 544150 511370 331160 543840 TRUE FALSE FALSE 323328.0255 338562.1129 290603.2022 418783.6989 336211.2047 408693.7503 407997.9146 394942.2141 359865.2154 407658.9242 0.793133687 0.830503376 0.712858679 1.027289418 0.824736526 1.002538461 1.000831554 0.968805515 0.882760548 1 18.63700307 -5.261187134 24.99999918 0.954908256 0.783999059 0.619925118 0.064265115 15.09916552 1496415.557 0.017425146 0.027902861 5.48E-06 5.261187134 -0.170909197 CAPS(ph)AGSPAAAVGR ddPTM_HeLa_A486_30min_R1 1 CAPSAGSPAAAVGR 14 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 CAPS(0.706)AGS(0.294)PAAAVGR 135.81 1.02E-05 958590000 257760 241760 176900 76265 254970 215060 258150 271070 206870 269780 TRUE FALSE FALSE 239692.3551 222602.0571 245400.4175 177548.7742 222989.2851 188528.0838 193558.1396 209353.2784 224801.6582 202225.332 1.185273638 1.100762476 1.213499887 0.877974942 1.10267731 0.932267396 0.957140916 1.035247544 1.111639456 1 17.6256042 -5.244254199 24.99114937 1.003257322 1.159937053 0.517761032 0.072484164 681.6330288 991247.7214 0.019167705 0.033099513 5.70E-06 5.244254199 0.156679731 CAPSAGS(ph)PAAAVGR ddPTM_HeLa_A485_30min_R1 4 CAPSAGSPAAAVGR 14 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 CAPS(0.002)AGS(0.998)PAAAVGR;CAPS(0.004)AGS(0.996)PAAAVGR;CAPSAGS(1)PAAAVGR;CAPS(0.007)AGS(0.993)PAAAVGR ;;; 188.55 1.31E-17 1698820000 947880 1183110 1000260 1119280 1477230 1010980 1429750 1410430 927200 1488620 TRUE FALSE FALSE 1158732.636 1321464.423 1370297.798 1180423.432 1330151.794 1063913.35 1124272.233 1064519.831 1113280.535 1117534.43 1.036865268 1.182482067 1.226179491 1.056274778 1.190255762 0.952018409 1.006029168 0.952561105 0.9961935 1 20.09188785 -6.266026848 24.99732735 0.979937296 1.141172692 0.656027897 0.056838325 236.7061236 1289817.671 0.019278867 0.017560719 5.42E-07 6.266026848 0.161235396 CAPSAGS(ph)PAAAVGR ddPTM_HeLa_A486_30min_R1 2 CAPSAGSPAAAVGR 14 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 CAPS(0.07)AGS(0.93)PAAAVGR;CAPS(0.052)AGS(0.948)PAAAVGR ; 174.44 2.22E-12 227920000 527680 481470 348910 154524 498390 451900 544110 553400 420320 581630 TRUE FALSE FALSE 490692.3569 443316.5637 484017.2961 359739.6812 435877.2789 396149.1726 407967.923 427402.9006 456753.676 435986.0622 1.125477164 1.016813614 1.110166902 0.825117389 0.999750489 0.908628066 0.935736158 0.98031322 1.047633664 1 18.73392249 -5.224122022 24.99955995 0.954831815 1.077418692 0.460818667 0.063007665 520.9101211 348966.3656 0.016602123 0.028754747 5.97E-06 5.224122022 0.122586877 CAPSAGSPAAAVGRES(ph)PGAAATSSSGPQAQQHR ddPTM_HeLa_A485_30min_R1 3 CAPSAGSPAAAVGRESPGAAATSSSGPQAQQHR 33 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR;CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR;CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR ;; 309.66 1.53E-109 3018050000 282707 430680 403770 377190 638350 382930 534510 570040 350104 570370 TRUE FALSE FALSE 345594.1968 481044.2796 553141.3253 397794.9346 574793.6326 402979.6227 420307.572 430236.7962 420366.6615 428187.2559 0.807109955 1.123443711 1.291821085 0.929020958 1.342388464 0.941129417 0.981597575 1.004786551 0.981735574 1 18.70788233 CAPSAGSPAAAVGRES(ph)PGAAATSSSGPQAQQHR ddPTM_HeLa_A486_30min_R1 2 CAPSAGSPAAAVGRESPGAAATSSSGPQAQQHR 33 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR;CAPSAGSPAAAVGRES(1)PGAAATSSSGPQAQQHR ; 262.95 3.55E-64 2350300000 245506 212181 200716 64496 290142 218319 303414 316656 204042 242369 TRUE FALSE FALSE 228297.2972 195367.0048 278438.6106 150149.9474 253749.6849 191385.0215 227496.608 244560.3414 221728.5248 181678.2248 1.256602421 1.075346289 1.532592091 0.82646089 1.396698394 1.053428509 1.252195238 1.34611807 1.220446342 1 17.47102599 CAVGAACQPFHFYFPTPTVLCNEIWTHSYK ddPTM_HeLa_A485_30min_R1 2 CAVGAACQPFHFYFPTPTVLCNEIWTHSYK 30 0 P15328 P15328 FOLR1 Folate receptor alpha 0 0 ; ; 313.19 9.90E-109 24583700 22354.9 14997.6 9770.2 25736.5 12467.1 19680.7 38609 33623.4 8878.3 58433 FALSE FALSE TRUE 27327.67038 16751.43886 13384.60355 27142.41983 11225.83175 20711.15102 30359.87174 25377.20843 10660.09337 43866.72848 0.622970331 0.381871168 0.305119712 0.6187473 0.255907658 0.472138036 0.692093365 0.578506976 0.243010905 1 15.4208395 -11.03591422 2.537936886 1.659681148 0.465161193 0.520661484 0.154458693 36922614.69 13575473.86 141605250.8 0.040026918 9.21E-12 11.03591422 -1.194519956 CAVGAACQPFHFYFPTPTVLCNEIWTHSYK ddPTM_HeLa_A486_30min_R1 2 CAVGAACQPFHFYFPTPTVLCNEIWTHSYK 30 0 P15328 P15328 FOLR1 Folate receptor alpha 0 0 ; ; 155.95 1.72E-20 28953700 4915.7 8354.2 6065.5 3842.5 13391.3 11494.2 12813.2 12096.1 11457.8 18352 FALSE FALSE TRUE 4571.134815 7692.182767 8414.22404 8945.534189 11711.63829 10076.16247 9607.201836 9342.082086 12450.97133 13756.53975 0.332288126 0.559165525 0.611652653 0.650275022 0.851350594 0.732463443 0.698373429 0.679101159 0.905094708 1 13.74783001 -4.06474771 0.452283428 0.827539627 7.59E-108 0.731172792 0.093002664 3.486228443 0.486346082 0.0664267 1.610045505 8.61E-05 4.06474771 -0.827539627 down CCSGAIIVLTK ddPTM_HeLa_A485_30min_R1 2 CCSGAIIVLTK 11 0 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 193.52 1.46E-13 162078000 234710 192011 181624 369870 396810 246330 413520 375310 191979 511990 FALSE FALSE TRUE 286920.4298 214465.0162 248814.2756 390075.0615 357302.2031 259227.4579 325168.0739 283264.634 230507.4244 384360.3155 0.746488173 0.557979082 0.647346424 1.0148682 0.929602221 0.674438665 0.845998041 0.736976797 0.599717024 1 18.55209986 -11.48401431 2.259257492 4.040320615 0.754925103 0.229454975 0.137003158 11267484.93 1021887.04 175121447.6 0.036846437 3.28E-12 11.48401431 -3.285395512 CCSGAIIVLTK ddPTM_HeLa_A486_30min_R1 1 CCSGAIIVLTK 11 0 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 198.25 1.09E-13 88666000 90258 136700 90867 65166 160070 157480 192810 171930 135900 161070 FALSE FALSE TRUE 83931.38029 125867.3941 126053.1359 151709.7413 139992.528 138051.7187 144566.8987 132785.2922 147679.9214 120737.0236 0.6951586 1.042492107 1.044030506 1.256530406 1.159483014 1.143408332 1.197370072 1.099789346 1.22315357 1 16.88150862 -3.935369618 1.280374075 1.156817939 0.137699934 0.774830724 0.072430446 1.199899971 0.989388211 0.019769745 1.955392589 0.000116046 3.935369618 -1.019118005 CDFTEDQTAGDGK ddPTM_HeLa_A485_30min_R1 1 CDFTEDQTAGDGK 13 0 F8VPF3 F8VPF3 MYL6 0 0 73.881 0.030622 24898000000 40145000 47224000 41865000 10047000 45856000 39634000 31964000 32627000 43431000 14645000 FALSE FALSE TRUE 49075116.75 52746436.01 57352605.65 10595842.17 41290415.63 41709174.95 25134630.28 24625177.09 52147203.33 10994271.02 4.463699017 4.797629229 5.216590126 0.963760321 3.755630141 3.793719008 2.286157057 2.239818997 4.743125145 1 23.39024861 -1 0.085587511 2.84E-11 12.74288906 0.312088587 1.24955426 220.2595418 1.366917913 28.34246922 330.2941764 0.1 1 12.74288906 CDFTEDQTAGDGK ddPTM_HeLa_A486_30min_R1 1 CDFTEDQTAGDGK 13 0 F8VPF3 F8VPF3 MYL6 0 0 81.494 0.015546 8876400000 11027000 21726000 19247000 429240 21095000 10732000 5487200 9139100 16692000 1332500 FALSE FALSE TRUE 10254064.24 20004352.64 26699953.85 999292.4126 18449068.4 9407994.955 4114244.522 7058326.435 18138876 998833.3269 10.26604136 20.02771844 26.73114036 1.000459622 18.47061757 9.41898383 4.119050107 7.066570813 18.16006286 1 19.92988443 -5.260169834 24.9982144 8.990935841 19.11024149 0.331778064 6.829359632 137.6623664 2710637.675 1.855304701 2.999693976 5.49E-06 5.260169834 10.11930565 CDGDASPPS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 CDGDASPPSPAR 12 0 F8W8D3;Q14493;E7EUV9 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 CDGDASPPS(1)PAR 194.51 1.21E-13 500510000 193630 273310 245730 242230 338400 244880 309930 331330 222000 327980 TRUE FALSE FALSE 236702.3255 305271.227 336635.7527 255462.4115 304707.7078 257701.5381 243710.9236 250070.798 266553.3637 246220.622 0.961342407 1.239828023 1.367211852 1.037534588 1.237539347 1.046628572 0.989807115 1.015637098 1.082579361 1 17.90959207 -6.375069654 5.723373078 1.022930236 1.175985053 0.304167869 0.107268177 0.291486601 12.78613529 0.038388848 0.033691235 4.22E-07 6.375069654 0.153054817 CDILVQEELLAS(ph)PK ddPTM_HeLa_A485_30min_R1 4 CDILVQEELLASPK 14 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK ;;; 243.01 2.12E-35 456633000 404738 315068 223256 964550 464829 253885 566217 339672 267617 1132290 TRUE FALSE FALSE 494770.5718 351912.4619 305847.6849 1017240.924 418548.9926 267178.026 445240.1124 256366.9094 321325.2772 850030.9413 0.582061838 0.413999591 0.359807708 1.196710466 0.492392656 0.314315648 0.52379283 0.30159715 0.378015978 1 19.69715583 -10.3857141 4.132962338 1.001420777 0.508549931 0.264552785 0.24660127 357237708.9 9713.376422 4831605.923 0.062156442 4.11E-11 10.3857141 -0.492870846 CDILVQEELLAS(ph)PK ddPTM_HeLa_A486_30min_R1 4 CDILVQEELLASPK 14 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK ;;; 202.79 7.17E-22 690850000 565325 506190 198260.9 495895 330474 673579 804717 649148 441975 1166726 TRUE FALSE FALSE 525698.6368 466077.6609 275032.8301 1154468.621 289022.8694 590479.6714 603368.2952 501351.1712 480285.7489 874570.2155 0.601093689 0.532921946 0.3144777 1.320041091 0.330474174 0.67516554 0.689902634 0.573254339 0.54916774 1 19.73821469 -11.08415552 2.421971419 1.602400092 0.623403943 0.157853193 0.262746775 14635994.06 4056715.455 48704572.53 0.062948138 8.24E-12 11.08415552 -0.978996149 CDSLLHFTENLFPS(ph)PNKK ddPTM_HeLa_A485_30min_R1 2 CDSLLHFTENLFPSPNKK 18 1 E5RFE4;Q56NI9;E5RFP7;E5RIE3 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 CDSLLHFTENLFPS(1)PNKK;CDSLLHFTENLFPS(1)PNKK ; 205.02 2.03E-25 352020000 254558 230268 127280 335130 378670 238219 526500 398000 179936 661460 TRUE FALSE FALSE 311183.5489 257195.8395 174366.1686 353437.3033 340968.2852 250691.7785 414008.9739 300389.876 216047.5047 496570.1953 0.62666578 0.517944577 0.351141027 0.711756982 0.686646699 0.504846608 0.833737058 0.604929331 0.435079485 1 18.92163815 -11.33256507 2.323249073 3.434567079 0.58909544 0.463479109 0.133632859 10455006.97 1499223.263 133453544.7 0.034124666 4.65E-12 11.33256507 -2.845471639 CDSLLHFTENLFPS(ph)PNKK ddPTM_HeLa_A486_30min_R1 2 CDSLLHFTENLFPSPNKK 18 1 E5RFE4;Q56NI9;E5RFP7;E5RIE3 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 CDSLLHFTENLFPS(1)PNKK;CDSLLHFTENLFPS(1)PNKK ; 196.4 2.85E-19 282640000 581800 430090 166456 74007 436040 494810 856690 671900 407820 671080 TRUE FALSE FALSE 541018.8244 396008.102 230912.221 172292.0361 381347.7973 433765.3731 642337.1009 518923.0375 443170.166 503037.2 1.075504604 0.787234228 0.459036073 0.342503569 0.758090649 0.862292835 1.276917693 1.031579846 0.880988853 1 18.94030557 -6.38177282 3.012159625 1.050147248 0.655750554 0.398485784 0.207009724 0.279761772 4.858479054 0.08592152 0.074118797 4.15E-07 6.38177282 -0.394396694 CDVDIRK ddPTM_HeLa_A486_30min_R1 2 CDVDIRK 7 1 P60709;A0A2R8Y793;Q562R1;P63261 P60709;P63261 ACTB;ACTBL2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ; ; 78.496 0.014008 1336100000 946900 811590 562480 541450 1169980 971650 1492480 1462770 757280 1420000 FALSE FALSE TRUE 880527.1998 747276.6526 780287.3197 1260522.963 1023230.199 851777.702 1119045.718 1129729.203 822921.6401 1064422.757 0.827234474 0.702048737 0.733061478 1.184231505 0.961300566 0.800225001 1.051316979 1.061353861 0.773115413 1 20.02163983 -5.215671439 24.99512236 0.97370117 0.748908125 0.428269245 0.117382378 409.6563435 223723.8923 0.031790135 0.055061839 6.09E-06 5.215671439 -0.224793045 CEELVEPFRCDSQLIQHQENNTEEK ddPTM_HeLa_A485_30min_R1 2 CEELVEPFRCDSQLIQHQENNTEEK 25 1 A0A3B3ITE4;P17027-2;P17027 A0A3B3ITE4 ZNF23 Zinc finger protein 23 0 0 ; ; 38.237 0.028251 7046400000 2092470 3717850 2594490 432197 2411220 2886070 1695200 2812670 2589920 438090 FALSE FALSE TRUE 2557932.733 4152620.217 3554299.817 455806.8277 2171150.47 3037180.162 1333006.671 2122858.272 3109693.188 328882.2254 7.777655752 12.62646594 10.80721165 1.385927218 6.601604777 9.234856515 4.053142944 6.454767416 9.455339776 1 18.32721151 -5.211865899 24.79005034 5.829218963 10.62605152 0.374251398 2.900025848 367.4288446 183738.1851 0.76655548 1.327710691 6.14E-06 5.211865899 4.79683256 CEELVEPFRCDSQLIQHQENNTEEK ddPTM_HeLa_A486_30min_R1 1 CEELVEPFRCDSQLIQHQENNTEEK 25 1 A0A3B3ITE4;P17027-2;P17027 A0A3B3ITE4 ZNF23 Zinc finger protein 23 0 0 37.896 0.028695 2444700000 1360200 1608000 1311600 69565 1400800 921560 476970 742360 1400200 152980 FALSE FALSE TRUE 1264857.004 1480576.224 1819486.646 161950.8356 1225098.602 807867.2969 357627.0611 573340.8336 1521570.463 114672.8123 11.03013852 12.91130997 15.86676571 1.412286247 10.68342685 7.044976756 3.118673503 4.999797443 13.26879871 1 16.80716386 -5.250224702 24.93097824 6.226281291 13.23359534 0.439005366 3.790464638 685.354288 1523585.518 1.003830427 1.718346329 5.62E-06 5.250224702 7.007314051 CENTPLIGRES(ph)PPPSYTSSMR ddPTM_HeLa_A485_30min_R1 1 CENTPLIGRESPPPSYTSSMR 21 1 Q9C0H2-3;Q9C0H2-2;Q9C0H2 Q9C0H2-3 TTYH3 Protein tweety homolog 3 1 0 CENTPLIGRES(0.997)PPPS(0.001)YTSSMR 107.19 5.13E-05 324050000 132710 158340 141240 194900 171550 144870 236820 196580 127880 352570 TRUE FALSE FALSE 162230.8817 176856.4856 193490.5535 205546.8935 154469.8797 152455.1692 186221.4724 148368.4468 153544.343 264680.7876 0.612930327 0.668187847 0.731033617 0.776584109 0.583608206 0.575996356 0.70357004 0.560556163 0.580111403 1 18.01389395 -10.63110438 5.958670761 1.002240767 0.64639031 0.697105221 0.07045313 0.002272065 0.000140661 0.073902405 0.017827979 2.34E-11 10.63110438 -0.355850457 CENTPLIGRES(ph)PPPSYTSSMR ddPTM_HeLa_A486_30min_R1 1 CENTPLIGRESPPPSYTSSMR 21 1 Q9C0H2-3;Q9C0H2-2;Q9C0H2 Q9C0H2-3 TTYH3 Protein tweety homolog 3 1 0 CENTPLIGRES(0.998)PPPS(0.002)YTSSMR 108.57 4.68E-05 324480000 145710 120420 121870 39945 194070 153030 192040 173470 169030 211230 TRUE FALSE FALSE 135496.4814 110877.4806 169061.3278 92993.97871 169727.931 134150.7145 143989.5608 133974.6678 183681.6565 158336.6331 0.855749417 0.700264231 1.067733502 0.587318152 1.07194354 0.847250013 0.9093888 0.846138163 1.160070496 1 17.27263555 -7.750820722 24.98980157 1.080035248 0.861375164 0.2743229 0.142676818 224.6502115 528697.1799 0.091258217 0.033710367 1.77E-08 7.750820722 -0.218660084 CETS(ph)PPSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 CETSPPSSPR 10 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72;M0QZB5;B1APN9;O75335-2;O75335-1;O75335 A0A2R8Y7R9 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 2 0 CET(0.357)S(0.643)PPS(0.001)S(0.999)PR;CET(0.251)S(0.749)PPS(0.163)S(0.837)PR ; 128.68 0.00019076 467320000 693010 1003480 741820 729780 1019780 819470 1073990 1230250 711310 981940 TRUE FALSE FALSE 847167.6836 1120828.257 1016250.088 769646.0335 918247.1225 862376.1821 844523.2628 928529.2585 854063.3925 737160.4293 1.14923109 1.520467204 1.378600977 1.044068568 1.245654387 1.169862282 1.145643783 1.259602688 1.158585511 1 19.4916191 -1.000000012 0.046107947 0.533997649 2.421802661 0.307353538 0.121232321 706.587261 2.473628652 25.31368518 98.01545229 0.099999997 1.000000012 1.887805012 CETS(ph)PPSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 CETSPPSSPR 10 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72;M0QZB5;B1APN9;O75335-2;O75335-1;O75335 A0A2R8Y7R9 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 2 0 CET(0.244)S(0.756)PPS(0.48)S(0.52)PR;CET(0.186)S(0.814)PPS(0.024)S(0.976)PR ; 145.29 1.28E-05 211520000 994210 985220 795940 389340 1158070 1014660 1173790 1153580 872550 1154920 TRUE FALSE FALSE 924521.0131 907147.5791 1104149.284 906403.1962 1012814.062 889481.5655 880095.3269 890935.0165 948183.3365 865720.5147 1.067920879 1.0478527 1.275410788 1.046992858 1.169908816 1.027446561 1.016604449 1.029125453 1.095253399 1 19.72354182 -6.27957118 24.35299944 1.034438707 1.121917471 0.299707703 0.067199645 782.044514 1050368.432 0.023366646 0.020649697 5.25E-07 6.27957118 0.087478764 CFNPPPKPEPFQFGQSSQKPPVAGGK(ac)K ddPTM_HeLa_A486_30min_R1 1 CFNPPPKPEPFQFGQSSQKPPVAGGKK 27 3 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 0 1 CFNPPPKPEPFQFGQSSQK(0.001)PPVAGGK(0.999)K 79.445 0.0029031 5700500 9578 9630.4 6486.5 5037.5 11262 10813 12563 15558 9679.5 15807 FALSE TRUE FALSE 8906.631661 8867.252031 8998.246514 11727.55458 9849.414946 9479.001999 9419.604522 12015.78303 10518.52685 11848.82431 0.751689064 0.748365559 0.759421043 0.989765252 0.831256729 0.799995151 0.794982209 1.014090741 0.887727472 1 13.5324563 -1 0.103890561 1.080391512 0.075362604 0.462679702 0.074704886 115.8873675 0.850133521 0.888900318 16.63212372 0.1 1 -1.005028907 CGESGHLAR ddPTM_HeLa_A485_30min_R1 2 CGESGHLAR 9 0 P62633-2;P62633-8;P62633-5;P62633;P62633-4;P62633-6;P62633-7;P62633-3 P62633-2 CNBP Cellular nucleic acid-binding protein 0 0 ; ; 134.26 0.0006957 51934000 62651 93617 75185 84169 126288 69664 115993 110481 70487 137477 FALSE FALSE TRUE 76587.49881 104564.6938 102999.0602 88766.93934 113714.3233 73311.49932 91210.14797 83385.36152 84633.09435 103206.514 0.742080086 1.013159826 0.997989916 0.860090472 1.101813431 0.710337909 0.88376348 0.807946692 0.820036363 1 16.65517451 -6.271767522 24.99727535 0.834872731 0.945368972 0.158448025 0.112494274 1194.503868 2891058.727 0.03735361 0.033313069 5.35E-07 6.271767522 0.110496241 CGGPGDAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 CGGPGDASPR 10 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 CGGPGDAS(1)PR;CGGPGDAS(1)PR ; 103.76 0.0011182 634340000 750480 748100 667270 328010 906550 849530 1000450 963220 727300 963760 TRUE FALSE FALSE 697875.2275 688817.8315 925654.8141 763623.8567 792842.0458 744723.626 750126.8283 743915.8329 790342.9496 722428.223 0.966013239 0.953475805 1.281310426 1.057023843 1.097468261 1.030861755 1.038340979 1.029743592 1.094008961 1 19.46249473 -6.275151514 23.60237004 1.0404344 1.075426934 0.032640068 0.086470473 1702.805839 2930990.002 0.031729051 0.028146527 5.31E-07 6.275151514 0.034992534 CGGVEQASS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 CGGVEQASSSPR 12 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 CGGVEQAS(0.128)S(0.525)S(0.347)PR 68.277 0.010174 0 193540 247060 233540 294730 401780 236930 382990 402540 239750 429410 TRUE FALSE FALSE 236592.3053 275951.5179 319936.1644 310830.3536 361777.3725 249335.2884 301161.0578 303816.4338 287865.6259 322365.9897 0.733924523 0.856019328 0.992462526 0.964215716 1.12225664 0.773454075 0.934220939 0.942458087 0.892977656 1 18.29834002 -4.447546281 3.009354699 0.949819158 0.732851229 0.400930607 0.083408355 0.299160928 4.682069057 0.021839924 0.122607149 3.57E-05 4.447546281 -0.216967929 CGGVEQASSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 CGGVEQASSSPR 12 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 CGGVEQASSS(1)PR 205.8 3.14E-17 1422700000 1092800 1222200 1193600 1441700 2106200 1096900 1827500 1694700 1151200 2002300 TRUE FALSE FALSE 1335889.59 1365125.658 1635162.31 1520456.42 1896499.333 1154331.988 1437039.696 1279072.168 1382235.281 1503163.46 0.888718776 0.908168469 1.087814036 1.011504378 1.261672056 0.767935104 0.956010264 0.850920211 0.919550879 1 20.51957047 -6.301779808 24.99995925 0.893136289 1.026729304 0.257982526 0.112157555 764.1869216 473583.2309 0.040001258 0.03527812 4.99E-07 6.301779808 0.133593015 CGGVEQASSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 CGGVEQASSSPR 12 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 CGGVEQASSS(1)PR;CGGVEQASS(0.001)S(0.999)PR;CGGVEQAS(0.01)S(0.155)S(0.835)PR ;; 189.13 3.89E-13 2152740000 1801600 1767820 1416920 799160 2091140 1902150 2341900 2226260 1819350 2156810 TRUE FALSE FALSE 1675317.143 1627731.505 1965589.37 1860484.867 1828849.722 1667482.073 1755931.85 1719389.197 1977052.723 1616730.738 1.036237578 1.006804329 1.215780293 1.150769775 1.13120242 1.031391334 1.086100369 1.063497561 1.222870746 1 20.62464799 -10.0651126 4.559732301 0.999994348 1.103514979 0.162954822 0.071298381 49330431.89 0.035606311 2927.15783 0.017712992 8.61E-11 10.0651126 0.103520631 CGKAFSCISKLIQHQK(ac)VHSGEK ddPTM_HeLa_A485_30min_R1 1 CGKAFSCISKLIQHQKVHSGEK 22 3 Q8TAW3 Q8TAW3 ZNF671 Zinc finger protein 671 0 1 CGKAFSCISKLIQHQK(1)VHSGEK 44.105 0.036866 10853000 22822 13402 6182.7 31401 13621 31064 45283 62142 11397 34482 FALSE TRUE FALSE 27898.67517 14969.24732 8469.938014 33116.35712 12264.84541 32690.46301 35607.91712 46901.57707 13684.27336 25886.27199 1.077740169 0.578269722 0.327198061 1.279301907 0.473797286 1.262849398 1.375552151 1.811832043 0.528630518 1 14.65989959 -6.282856562 23.16768688 1.257748707 0.744093977 0.233114166 0.398884361 417.7466349 451888.0637 0.136500733 0.120538938 5.21E-07 6.282856562 -0.51365473 CGKAFSCISKLIQHQK(ac)VHSGEK ddPTM_HeLa_A486_30min_R1 1 CGKAFSCISKLIQHQKVHSGEK 22 3 Q8TAW3 Q8TAW3 ZNF671 Zinc finger protein 671 0 1 CGKAFSCISKLIQHQK(1)VHSGEK 44.105 0.036866 11139000 18188 10253 6162.1 23186 13435 16558 28761 27811 8271.9 50780 FALSE TRUE FALSE 16913.11512 9440.514939 8548.230147 53978.17976 11749.85702 14515.24231 21564.6936 21479.04241 8988.914952 38064.35748 0.444329453 0.248014562 0.224573084 1.418076735 0.308683971 0.381334226 0.566532447 0.56428228 0.236150445 1 15.21615311 -10.90145368 2.572667016 1.280606244 0.496689086 0.174413863 0.333700895 106066082.2 58817108.2 180108238.3 0.083799467 1.25E-11 10.90145368 -0.783917159 CGLGQENS(ph)DNEHLVENEVSLLLEESDLR ddPTM_HeLa_A485_30min_R1 1 CGLGQENSDNEHLVENEVSLLLEESDLR 28 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 CGLGQENS(1)DNEHLVENEVSLLLEESDLR 53.264 0.023244 32336000 5160 6835 6174.9 6067.2 9185.9 6070.7 6665 8361.3 6039.3 8913.1 TRUE FALSE FALSE 6307.824198 7634.293793 8459.252469 6398.635773 8271.319542 6388.552465 5240.968302 6310.678065 7251.332114 6691.228203 0.942700504 1.140940581 1.264230155 0.956272239 1.236143693 0.954765294 0.783259537 0.943127012 1.08370719 1 12.70805533 -6.40116458 8.273058975 0.936813839 1.109827085 0.294638032 0.11895004 0.357826667 22.70953516 0.041887345 0.036881377 3.97E-07 6.40116458 0.173013246 CGLGQENS(ph)DNEHLVENEVSLLLEESDLR ddPTM_HeLa_A486_30min_R1 2 CGLGQENSDNEHLVENEVSLLLEESDLR 28 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 CGLGQENS(1)DNEHLVENEVSLLLEESDLR;CGLGQENS(1)DNEHLVENEVSLLLEESDLR ; 138.03 1.12E-06 79907000 19100.8 24951 19457.1 8777.2 21783 25513 27220 29383 22409 26845 TRUE FALSE FALSE 17761.93256 22973.79189 26991.4102 20433.76518 19050.77302 22365.46546 20409.2681 22693.13233 24351.43016 20122.83727 0.882675356 1.141677567 1.341332231 1.015451494 0.946724002 1.111446918 1.014234117 1.127730251 1.210139 1 14.29654612 -9.735074583 8.806883419 1.000004934 1.090377335 0.042136268 0.125291724 0 0 0.124409531 0.030173743 1.84E-10 9.735074583 0.090372401 CGLGQENS(ph)DNEHLVENEVSLLLEESDLRR ddPTM_HeLa_A485_30min_R1 1 CGLGQENSDNEHLVENEVSLLLEESDLRR 29 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 CGLGQENS(1)DNEHLVENEVSLLLEESDLRR 133.47 1.62E-06 26156000 4256.5 5491.2 5330.6 4330.1 7667.6 3837.6 5256.3 7498.6 3123.1 5670.7 TRUE FALSE FALSE 5203.34374 6133.348073 7302.610765 4566.642399 6904.186821 4038.530802 4133.248565 5659.556593 3749.877523 4257.098851 1.222274587 1.440734239 1.715396099 1.072712323 1.621805615 0.948657981 0.97090735 1.329439788 0.880852819 1 12.05565488 -6.272445222 24.98940956 1.043120048 1.413756184 0.477037309 0.203047271 675.2658654 1533226.404 0.069153051 0.061564598 5.34E-07 6.272445222 0.370636136 CGLGQENS(ph)DNEHLVENEVSLLLEESDLRR ddPTM_HeLa_A486_30min_R1 1 CGLGQENSDNEHLVENEVSLLLEESDLRR 29 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 CGLGQENS(1)DNEHLVENEVSLLLEESDLRR 105.04 0.00017536 36706000 4573.2 4180.1 3264.1 2951.6 6203.8 5112.4 5518.7 6426.3 3643.7 4822.4 TRUE FALSE FALSE 4252.642296 3848.853652 4528.046936 6871.473966 5425.661556 4481.684067 4137.862889 4963.171775 3959.53885 3614.839651 1.176440093 1.064737035 1.252627329 1.900906991 1.500941142 1.239801623 1.144687811 1.372999152 1.095356705 1 11.81971594 -6.460426246 6.749096686 1.185207927 1.383191884 0.174627112 0.228565866 0.558784414 50.32174781 0.090824702 0.079288267 3.46E-07 6.460426246 0.197983957 CGRGGMSGGRSR ddPTM_HeLa_A485_30min_R1 1 CGRGGMSGGRSR 12 2 C9JFF0;Q9ULI4 C9JFF0 KIF26A Kinesin-like protein;Kinesin-like protein KIF26A 0 0 71.451 0.0085353 73659000 7268.1 7869 7716.4 8385.7 11794 7957.6 11411 9165.1 7092.2 12212 FALSE FALSE TRUE 8884.86377 8789.211099 10571.01747 8843.789557 10619.74795 8374.247631 8972.946631 6917.344855 8515.539486 9167.773145 0.969140884 0.958707307 1.153062723 0.964660602 1.158378134 0.913444028 0.978748764 0.754528362 0.928855825 1 13.16235563 -6.424505845 10.56873806 0.902326775 1.038256133 0.320793821 0.090587381 0.586508501 59.93177177 0.031282392 0.027573684 3.76E-07 6.424505845 0.135929359 CGRGGMSGGRSR ddPTM_HeLa_A486_30min_R1 2 CGRGGMSGGRSR 12 2 C9JFF0;Q9ULI4 C9JFF0 KIF26A Kinesin-like protein;Kinesin-like protein KIF26A 0 0 ; ; 60.518 0.021727 112529000 18214.2 18457.8 16218.7 7073.7 19666.3 17885.4 21829.1 23379.2 15739 23729.6 FALSE FALSE TRUE 16937.47864 16995.13671 22499.01499 16467.93109 17199.56927 15678.88119 16367.2283 18056.26652 17103.26919 17787.55371 0.952209557 0.955451041 1.264874044 0.925812023 0.966944053 0.88145236 0.920150604 1.015106789 0.961530151 1 14.11858049 CGS(ph)GPVHISGQHLVAVEEDAESEDEEEEDVK ddPTM_HeLa_A485_30min_R1 5 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVK;CGS(0.347)GPVHIS(0.347)GQHLVAVEEDAES(0.306)EDEEEEDVK ;;;; 51.296 0.010337 298759000 51755.3 46266.3 43387.7 34100.8 47848.7 66195.4 53142.7 65911.6 64020.5 30168.4 TRUE FALSE FALSE 63268.08793 51676.74132 59438.61574 35963.64036 43084.71542 69661.28879 41788.32801 49746.67675 76868.82712 22647.97309 2.793543055 2.281738022 2.624456304 1.587940793 1.902365181 3.07582884 1.845124411 2.196517832 3.394070932 1 14.46709432 -10.93224729 2.759781244 0.108871128 2.371139044 0.377349517 0.541654609 55216892.73 53681552.04 320191033.6 0.132053145 1.17E-11 10.93224729 2.262267915 CGS(ph)GPVHISGQHLVAVEEDAESEDEEEEDVK ddPTM_HeLa_A486_30min_R1 8 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.4)GPVHIS(0.353)GQHLVAVEEDAES(0.247)EDEEEEDVK;CGS(0.37)GPVHIS(0.332)GQHLVAVEEDAES(0.298)EDEEEEDVK;CGS(0.361)GPVHIS(0.319)GQHLVAVEEDAES(0.319)EDEEEEDVK;CGS(0.478)GPVHIS(0.417)GQHLVAVEEDAES(0.105)EDEEEEDVK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVK;CGS(0.35)GPVHIS(0.305)GQHLVAVEEDAES(0.344)EDEEEEDVK;CGS(0.361)GPVHIS(0.319)GQHLVAVEEDAES(0.319)EDEEEEDVK ;;;;;;; 59.873 0.0052366 496154000 76331.1 112876.44 78182.8 27729.39 113197.3 117101.4 84189.6 113454.9 102096.2 65010.2 TRUE FALSE FALSE 70980.68406 103931.6998 108457.274 64555.42129 98999.03911 102654.6199 63124.47161 87623.69597 110945.9808 48731.22277 1.456575067 2.132753785 2.225621846 1.324724019 2.031532013 2.106547179 1.295359895 1.79810173 2.276691913 1 15.5725588 -10.17125793 4.316053814 0.999787666 1.848775377 0.343348122 0.352548333 118433591 113.5141276 264648.0413 0.084163905 6.74E-11 10.17125793 0.848987711 CGS(ph)GPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK ddPTM_HeLa_A485_30min_R1 1 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.363)GPVHIS(0.332)GQHLVAVEEDAES(0.304)EDEEEEDVKLLSISGK 72.879 0.00061826 294660000 70851 81748 87471 51175 258770 128980 190940 220790 144500 112940 TRUE FALSE FALSE 86611.56052 91307.71749 119830.1629 53970.56067 233005.9502 135733.1934 150144.1092 166640.9063 173499.8246 84786.13651 1.021529746 1.076918011 1.4133226 0.636549357 2.748160959 1.600889001 1.770856833 1.965426344 2.04632304 1 16.37154077 -5.741124083 24.99986906 1.886607398 1.066800059 0.448702226 0.442995506 216.3927496 266290.318 0.123529878 0.159281647 1.81E-06 5.741124083 -0.819807339 CGS(ph)GPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK ddPTM_HeLa_A486_30min_R1 10 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.462)GPVHIS(0.462)GQHLVAVEEDAES(0.076)EDEEEEDVKLLSISGK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVKLLSISGK;CGS(0.4)GPVHIS(0.329)GQHLVAVEEDAES(0.271)EDEEEEDVKLLSISGK;CGS(0.355)GPVHIS(0.355)GQHLVAVEEDAES(0.29)EDEEEEDVKLLSISGK;CGS(0.36)GPVHIS(0.282)GQHLVAVEEDAES(0.358)EDEEEEDVKLLSISGK;CGS(0.483)GPVHIS(0.435)GQHLVAVEEDAES(0.081)EDEEEEDVKLLSISGK;CGS(0.352)GPVHIS(0.324)GQHLVAVEEDAES(0.324)EDEEEEDVKLLSISGK;CGS(0.34)GPVHIS(0.34)GQHLVAVEEDAES(0.319)EDEEEEDVKLLS(0.001)ISGK;CGS(0.459)GPVHIS(0.459)GQHLVAVEEDAES(0.082)EDEEEEDVKLLS(0.001)ISGK;CGS(0.333)GPVHIS(0.333)GQHLVAVEEDAES(0.333)EDEEEEDVKLLSISGK ;;;;;;;;; 119.89 6.28E-06 2810193000 944533 1371705 1344456 159939.5 2614784 1645349 1423478 2133236 1095950 455567.6 TRUE FALSE FALSE 878326.1143 1263006.1 1865065.369 372347.2389 2286813.409 1442362.569 1067308.748 1647544.731 1190947.828 341490.5077 2.572036688 3.698510124 5.461543811 1.090358972 6.696565079 4.223726682 3.125441921 4.824569626 3.487499071 1 18.38148595 -5.742887793 24.99997828 4.062358941 3.401959445 0.02755834 1.688030683 1050.774957 1416009.994 0.479143608 0.617446968 1.81E-06 5.742887793 -0.660399496 CGSGPVHIS(ph)GQHLVAVEEDAESEDEEEEDVK ddPTM_HeLa_A485_30min_R1 1 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.059)GPVHIS(0.505)GQHLVAVEEDAES(0.436)EDEEEEDVK 61.732 0.0041313 21717000 3319.6 3082.8 2547 2084.3 3505.7 4866.5 3196.5 3594.6 5679.1 2642.6 TRUE FALSE FALSE 4058.033568 3443.306643 3489.24129 2198.160031 3156.660199 5121.302415 2513.541662 2713.018714 6818.843278 1983.848453 2.045536069 1.735670201 1.758824513 1.1080282 1.591180109 2.581498807 1.267002859 1.367553408 3.437179522 1 10.95408611 CGSGPVHIS(ph)GQHLVAVEEDAESEDEEEEDVK ddPTM_HeLa_A486_30min_R1 1 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.082)GPVHIS(0.459)GQHLVAVEEDAES(0.459)EDEEEEDVK 42.59 0.021783 17825000 2894.8 6235.6 4807.8 589.21 5782.2 6185 3133.1 4864 4806.8 2471.4 TRUE FALSE FALSE 2691.889469 5741.468346 6669.508917 1371.710657 5056.942559 5421.957584 2349.165241 3756.57338 5223.457294 1852.545354 1.453076149 3.099232272 3.600186578 0.740446464 2.729726724 2.92676105 1.268074348 2.027790236 2.81961102 1 10.85529315 -10.66754096 0.314563307 4.65E-12 2.412925477 0.156624121 0.870111931 50.24901837 2.85967496 41.64740463 0.861604141 2.15E-11 10.66754096 2.412925477 CGSGPVHIS(ph)GQHLVAVEEDAESEDEEEEDVKLLSISGK ddPTM_HeLa_A486_30min_R1 1 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.118)GPVHIS(0.441)GQHLVAVEEDAES(0.441)EDEEEEDVKLLSISGK 68.741 0.0008004 602510000 184730 211210 218890 12536 418330 232660 235830 303580 220020 51401 TRUE FALSE FALSE 171781.3809 194472.9504 303650.0701 29184.44153 365859.1506 203956.7747 176822.8396 234461.4611 239091.5108 38529.85504 4.458396762 5.047331484 7.880903517 0.757450074 9.495471766 5.293473711 4.589242277 6.085189287 6.205357132 1 15.23368914 -9.497708653 7.258137496 1.00000022 5.546691455 0.282010054 2.170636754 323934440 0 1.972213411 0.49305336 3.18E-10 9.497708653 4.546691236 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_HeLa_A485_30min_R1 44 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.002)GPVHIS(0.002)GQHLVAVEEDAES(0.997)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHIS(0.003)GQHLVAVEEDAES(0.996)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.025)GPVHIS(0.022)GQHLVAVEEDAES(0.953)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHIS(0.002)GQHLVAVEEDAES(0.998)EDEEEEDVK;CGS(0.017)GPVHIS(0.016)GQHLVAVEEDAES(0.967)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.016)GPVHIS(0.02)GQHLVAVEEDAES(0.964)EDEEEEDVK;CGS(0.068)GPVHIS(0.064)GQHLVAVEEDAES(0.868)EDEEEEDVK;CGS(0.014)GPVHIS(0.013)GQHLVAVEEDAES(0.973)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHIS(0.001)GQHLVAVEEDAES(0.999)EDEEEEDVK;CGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.998)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.008)GPVHIS(0.006)GQHLVAVEEDAES(0.986)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 282 6.99E-78 45491063500 4615779.3 5133045.5 4285874.8 4192629 7025816.3 4675431.11 5969775.8 5408536.3 5404535.4 6034238.1 TRUE FALSE FALSE 5642543.481 5733310.52 5871398.239 4421661.706 6326301.36 4920229.453 4694284.432 4082084.292 6489176.081 4530013.594 1.24559085 1.265627663 1.296110512 0.976081333 1.396530326 1.086140108 1.036262769 0.901119656 1.432484903 1 22.11108395 -6.465459376 24.99817645 1.080937052 1.228015695 0.164151297 0.162078789 501.3149275 218252.9892 0.055049085 0.04854857 3.42E-07 6.465459376 0.147078643 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_HeLa_A486_30min_R1 42 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.022)GPVHIS(0.022)GQHLVAVEEDAES(0.955)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.003)GPVHIS(0.002)GQHLVAVEEDAES(0.994)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.245)GPVHIS(0.29)GQHLVAVEEDAES(0.465)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.116)GPVHIS(0.116)GQHLVAVEEDAES(0.769)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.022)GPVHIS(0.02)GQHLVAVEEDAES(0.958)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.054)GPVHIS(0.059)GQHLVAVEEDAES(0.888)EDEEEEDVK;CGS(0.023)GPVHIS(0.138)GQHLVAVEEDAES(0.839)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVK;CGS(0.004)GPVHIS(0.018)GQHLVAVEEDAES(0.979)EDEEEEDVK;CGS(0.002)GPVHIS(0.013)GQHLVAVEEDAES(0.986)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.001)GPVHIS(0.006)GQHLVAVEEDAES(0.993)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGS(0.001)GPVHIS(0.002)GQHLVAVEEDAES(0.997)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 242.65 1.23E-50 52013040000 4335738.7 5104854.6 3448400.1 906505.58 4867588.8 4809526.9 4638423.3 4635530.1 4493151.3 3088877.7 TRUE FALSE FALSE 4031825.807 4700327.33 4783712.97 2110390.802 4257050.424 4216176.371 3477840.73 3580121.089 4882621.272 2315402.619 1.741306576 2.030025919 2.066039371 0.911457379 1.838578911 1.820925802 1.502045779 1.546219677 2.10875691 1 21.14283165 -10.77908412 2.719687437 0.819999663 1.71798123 0.298353476 0.335189251 58101260.89 43939772.95 69514114.23 0.085907853 1.66E-11 10.77908412 0.897981567 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGK ddPTM_HeLa_A485_30min_R1 11 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.165)GPVHIS(0.154)GQHLVAVEEDAES(0.677)EDEEEEDVKLLS(0.004)ISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGS(0.14)GPVHIS(0.14)GQHLVAVEEDAES(0.72)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGS(0.119)GPVHIS(0.119)GQHLVAVEEDAES(0.763)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVKLLSISGK;CGS(0.074)GPVHIS(0.23)GQHLVAVEEDAES(0.695)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGS(0.065)GPVHIS(0.052)GQHLVAVEEDAES(0.883)EDEEEEDVKLLSISGK;CGS(0.045)GPVHIS(0.045)GQHLVAVEEDAES(0.91)EDEEEEDVKLLSISGK ;;;;;;;;;; 443.98 4.55E-276 7764630000 944543 1063939 1050269 586980 3533441 1295694 2350653 2421394 1608544 1372388 TRUE FALSE FALSE 1154653.332 1188357.411 1438807.208 619045.2311 3181639.207 1363534.534 1848416.783 1827543.325 1931364.026 1030276.929 1.120721332 1.153434944 1.396524729 0.60085324 3.088139819 1.323464106 1.794097036 1.773836989 1.874606693 1 19.97460074 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGK ddPTM_HeLa_A486_30min_R1 10 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGS(0.028)GPVHIS(0.028)GQHLVAVEEDAES(0.942)EDEEEEDVKLLS(0.001)ISGK;CGS(0.007)GPVHIS(0.007)GQHLVAVEEDAES(0.985)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGS(0.01)GPVHIS(0.009)GQHLVAVEEDAES(0.982)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK ;;;;;;;;; 383.37 3.84E-195 7786290000 1542499.9 1618719 1364284 289527.5 2746530 1789724.4 2535999 2503140 1521088 839176.1 TRUE FALSE FALSE 1434378.622 1490445.811 1892571.302 674034.6519 2402034.597 1568926.4 1901465.227 1933229.665 1652937.133 629040.9424 2.280262739 2.369393962 3.008661557 1.071527474 3.818566384 2.494156253 3.022800423 3.073297038 2.627709933 1 19.2627944 -5.771525533 24.99799878 2.784991812 2.254827881 0.068962143 0.805338947 505.5374787 1252944.45 0.233641643 0.267948725 1.69E-06 5.771525533 -0.530163931 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGKR ddPTM_HeLa_A485_30min_R1 4 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKR 39 2 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGKR;CGSGPVHISGQHLVAVEEDAES(0.993)EDEEEEDVKLLS(0.003)IS(0.003)GKR;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGKR;CGSGPVHISGQHLVAVEEDAES(0.577)EDEEEEDVKLLS(0.211)IS(0.211)GKR ;;; 226.86 2.39E-40 5265550000 272342 830222 426035 92515.8 1689614 776670 1538375 2927832 529124 270561 TRUE FALSE FALSE 332923.5383 927309.2409 583643.0753 97569.70389 1521390.098 817335.2402 1209688.614 2209776.611 635314.3334 203115.122 1.639087898 4.565436742 2.873459492 0.480366518 7.490284734 4.023999947 5.955679725 10.87942931 3.127853441 1 17.63193813 -5.766481993 24.99987602 5.864542475 2.57956771 0.223008293 2.676985129 172.8782545 857081.6228 0.800528985 0.935690443 1.71E-06 5.766481993 -3.284974764 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGKR ddPTM_HeLa_A486_30min_R1 1 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKR 39 2 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 CGSGPVHISGQHLVAVEEDAES(0.633)EDEEEEDVKLLS(0.184)IS(0.184)GKR 62.024 0.002914 58871000 30754 16060 18799 5934.1 30953 21362 27414 25923 13980 9871.2 TRUE FALSE FALSE 28598.30341 14787.34711 26078.47625 13814.88469 27070.58611 18726.57363 20554.72724 20020.8988 15191.79766 7399.387269 3.86495562 1.998455625 3.524410239 1.867030903 3.658490241 2.530827615 2.777895858 2.705750904 2.05311563 1 12.85319009 -8.097434524 1.372399929 0.996984213 2.868999774 0.467970162 0.626642695 0.457503766 1.857696761 0.539464251 0.161887482 7.99E-09 8.097434524 1.872015562 CGYAGSNFPEHIFPALVGRPIIR ddPTM_HeLa_A485_30min_R1 1 CGYAGSNFPEHIFPALVGRPIIR 23 1 P61160;P61160-2;A0A1B0GWD0;A0A1B0GWH0 P61160 ACTR2 Actin-related protein 2 0 0 89.483 0.00014611 12295000 4374.9 4240.6 4688.9 4054.5 7701 3959.2 6445.7 7322.8 6809.4 5808.6 FALSE FALSE TRUE 5348.081412 4736.501282 6423.519231 4275.987068 6934.2614 4166.49759 5068.523538 5526.871818 8175.98412 4360.622919 1.226448953 1.086198318 1.473073767 0.980590881 1.590199733 0.955482202 1.162339334 1.267450069 1.874957838 1 12.09031852 -7.546415461 24.99769193 1.482054022 1.212083245 0.093737079 0.271256018 436.5529938 463641.745 0.167334566 0.063253877 2.84E-08 7.546415461 -0.269970778 CHDCS(ph)QPCPWPMIEK ddPTM_HeLa_A486_30min_R1 1 CHDCSQPCPWPMIEK 15 0 O75509 O75509 TNFRSF21 Tumor necrosis factor receptor superfamily member 21 1 0 CHDCS(1)QPCPWPMIEK 73.464 0.0058959 2642600000 1629600 1925200 1403000 75103 2217600 1738400 1674500 1827700 1587300 829910 TRUE FALSE FALSE 1515373.455 1772640.141 1946279.174 174843.5795 1939447.93 1523933.883 1255522.389 1411572.608 1724888.442 622095.1342 2.435919158 2.84946794 3.128587682 0.281056015 3.117606654 2.449679798 2.018216057 2.269062288 2.772708461 1 19.2467757 -10.7501078 2.553975077 0.688404451 2.355311433 0.218261065 0.776947359 23211809.83 17288077.2 45650239.79 0.192085236 1.78E-11 10.7501078 1.666906983 CIACQAAKLS(ph)PR ddPTM_HeLa_A485_30min_R1 4 CIACQAAKLSPR 12 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 CIACQAAKLS(1)PR;CIACQAAKLS(1)PR;CIACQAAKLS(1)PR;CIACQAAKLS(1)PR ;;; 198.51 2.67E-17 5722080000 3913590 4343600 3132780 5393610 7631300 4698660 8242300 8737000 3661740 7553400 TRUE FALSE FALSE 4784154.594 4851546.236 4291725.688 5688249.257 6871500.977 4944674.572 6481265.272 6594237.051 4396617.631 5670476.39 0.843695356 0.855580008 0.75685452 1.003134281 1.211803119 0.872003379 1.142984262 1.162907064 0.775352427 1 22.43503851 -5.356857716 5.753921581 1.03935341 0.823319255 0.351987219 0.12702497 0.236043986 11.4874416 0.035054785 0.052503377 4.40E-06 5.356857716 -0.216034154 CIACQAAKLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 CIACQAAKLSPR 12 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 CIACQAAKLS(1)PR;CIACQAAKLS(1)PR ; 144.18 1.01E-07 2575300000 2286900 2071200 1331830 1335690 2827200 2529000 3636300 3641300 1739160 3201000 TRUE FALSE FALSE 2126600.12 1907070.569 1847550.244 3109553.822 2472586.213 2216997.693 2726459.279 2812255.479 1889911.789 2399448.765 0.886286947 0.794795287 0.769989454 1.29594508 1.030480938 0.923961255 1.136285683 1.172042312 0.787644153 1 21.19427158 -5.221001303 24.99749368 1.054243795 0.814800948 0.388813684 0.133454658 518.6219963 320594.5048 0.035667485 0.061776943 6.01E-06 5.221001303 -0.239442847 CIAYS(ph)PPFGDYAQVSSLR ddPTM_HeLa_A485_30min_R1 2 CIAYSPPFGDYAQVSSLR 18 0 Q9HCJ3-2;Q9HCJ3 Q9HCJ3-2 RAVER2 Ribonucleoprotein PTB-binding 2 1 0 CIAYS(1)PPFGDYAQVSSLR;CIAY(0.005)S(0.994)PPFGDYAQVSSLR ; 77.562 0.0039875 65109000 35148 46262 40964 36396 61145 43212 59737 66623 38418 47855 TRUE FALSE FALSE 42966.55134 51671.93847 56118.28825 38384.22132 55057.18911 45474.5135 46973.70194 50283.60479 46128.14021 35925.62921 1.195986049 1.43830295 1.562068348 1.068435603 1.532532354 1.265795882 1.307526214 1.399658291 1.283989765 1 15.1327258 -8.109439981 5.825678798 1.000004075 1.349257625 0.348095246 0.141570257 1.432966172 75.57049562 0.129342423 0.033585523 7.77E-09 8.109439981 0.34925355 CIAYS(ph)PPFGDYAQVSSLR ddPTM_HeLa_A486_30min_R1 2 CIAYSPPFGDYAQVSSLR 18 0 Q9HCJ3-2;Q9HCJ3 Q9HCJ3-2 RAVER2 Ribonucleoprotein PTB-binding 2 1 0 CIAYS(1)PPFGDYAQVSSLR;CIAYS(1)PPFGDYAQVSSLR ; 113.29 8.55E-05 62166000 64527 70146 54371 24409 78267 60541 77899 81096 52587 72129 TRUE FALSE FALSE 60003.99052 64587.37549 75424.90731 56825.38556 68450.02305 53072.06696 58407.84627 62632.21111 57145.2835 54067.42892 1.109799221 1.194570868 1.395015609 1.051009576 1.266012171 0.981590359 1.080277857 1.158409275 1.056926224 1 15.72247213 -6.255265979 24.99830546 1.066893642 1.204989911 0.366930133 0.096497807 603.0543107 2441983.797 0.032092553 0.03129388 5.56E-07 6.255265979 0.138096269 CIESLIAVFQK ddPTM_HeLa_A485_30min_R1 2 CIESLIAVFQK 11 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 ; ; 208.03 3.02E-14 33888000 52698 55212 46869 69422 83215 60364 82980 84027 46946 95036 FALSE FALSE TRUE 64420.48829 61668.56312 64207.79348 73214.34807 74929.82241 63524.5657 65250.64512 63419.2465 56367.63159 71345.27421 0.902939809 0.864367876 0.899958605 1.026197585 1.050242265 0.890382249 0.914575574 0.888906059 0.790068189 1 16.12253025 -9.311563468 9.519669609 0.99999718 0.918163084 0.113567558 0.071149392 0 0 0.075102486 0.018215028 4.88E-10 9.311563468 -0.081834096 CIESLIAVFQK ddPTM_HeLa_A486_30min_R1 2 CIESLIAVFQK 11 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 ; ; 223.08 3.58E-20 41501000 56396 56051 41463 27605.3 68418 65884 76701 73591 57720 76843 FALSE FALSE TRUE 52442.93163 51609.31463 57518.58402 64266.53349 59836.37647 57755.90194 57509.59854 56835.93578 62723.21607 57601.01264 0.910451557 0.895979294 0.998568973 1.115718814 1.038807718 1.002689003 0.998412978 0.986717649 1.08892558 1 15.81380655 -4.848576375 4.420854219 1.031687032 0.902888923 0.623963263 0.039599155 0.13212032 4.625936482 0.010949918 0.024921553 1.42E-05 4.848576375 -0.12879811 CIHSFQNLGIQCVK(ac)K ddPTM_HeLa_A485_30min_R1 1 CIHSFQNLGIQCVKK 15 1 Q2TAM5;E9PKH5;A0A087X0W8;Q04206-2;Q04206-3;Q04206-4;Q04206;E9PRX2;E9PMD5;E9PI38;E9PQS6;E9PKV4;A0A087WVP0 Q2TAM5 RELA Transcription factor p65 0 1 CIHSFQNLGIQCVK(1)K 85.619 0.02601 18326000 7825.2 9326.1 10632 9270 13936 8914.8 11270 12279 9444.3 14006 FALSE TRUE FALSE 9565.888743 10416.70627 14565.21923 9776.396627 12548.48291 9381.565143 8862.072433 9267.555997 11339.68438 10514.56196 0.909775298 0.990693317 1.385242608 0.929795902 1.193438486 0.892244982 0.842838006 0.881402005 1.078474255 1 13.36010113 -6.279471472 24.55765564 0.925569849 1.085142709 0.196590268 0.142975696 1025.209207 1396213.445 0.050388128 0.044530268 5.25E-07 6.279471472 0.15957286 CILHWFANWSGPQR ddPTM_HeLa_A485_30min_R1 1 CILHWFANWSGPQR 14 0 Q9NWQ9 Q9NWQ9 C14orf119 Uncharacterized protein C14orf119 0 0 150.69 2.36E-06 18495000 15583 15062 19568 17472 26229 22576 33686 36516 13290 23910 FALSE FALSE TRUE 19049.38459 16823.36988 26807.01749 18426.45112 23617.54866 23758.04445 26488.71091 27560.39375 15957.1811 17949.67703 1.061266147 0.937251954 1.49345403 1.026561708 1.315764547 1.323591751 1.475720753 1.535425607 0.888995444 1 14.13167027 -4.740625012 24.99998022 1.280557386 0.999258878 0.183443756 0.213471301 357.5655381 429462.7529 0.052469036 0.138490296 1.82E-05 4.740625012 -0.281298508 CILHWFANWSGPQR ddPTM_HeLa_A486_30min_R1 1 CILHWFANWSGPQR 14 0 Q9NWQ9 Q9NWQ9 C14orf119 Uncharacterized protein C14orf119 0 0 156.08 3.10E-07 24436000 14851 22710 25385 10756 36757 30541 35068 31806 31316 33751 FALSE FALSE TRUE 13810.02159 20910.37689 35214.75183 25040.51158 32146.59431 26773.16194 26293.61549 24564.46812 34030.49609 25299.52992 0.545860798 0.826512467 1.391913286 0.989761931 1.270639985 1.058247407 1.03929265 0.970945634 1.345103889 1 14.62682296 -4.539984275 5.7534864 1.126390745 0.606302819 0.622790298 0.146497679 0.085655478 9.548207973 0.035568707 0.106668257 2.88E-05 4.539984275 -0.520087927 CIYCIHALSLYLFK ddPTM_HeLa_A485_30min_R1 1 CIYCIHALSLYLFK 14 0 P46940;A0A0J9YXZ5;H0YKA5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 176.29 1.61E-10 36530000 28338 21956 23308 28002 33027 27040 49725 51155 15221 46821 FALSE FALSE TRUE 34641.69034 24523.56321 31930.59913 29531.67836 29738.71592 28455.77259 39100.84753 38609.15604 18275.71508 35149.38638 0.985556048 0.697695344 0.908425507 0.840176214 0.846066432 0.809566696 1.112419065 1.098430443 0.519944072 1 15.10121188 CIYCIHALSLYLFK ddPTM_HeLa_A486_30min_R1 2 CIYCIHALSLYLFK 14 0 P46940;A0A0J9YXZ5;H0YKA5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 191.26 1.93E-11 76522000 33272 67334 64417 40456 114751 95702 120173 106692 80542 100151 FALSE FALSE TRUE 30939.80462 61998.20861 89360.98755 94183.61253 100357.8596 83895.26027 90104.44434 82400.56067 87523.44541 75072.53773 0.412132127 0.82584405 1.190328584 1.25456812 1.33681187 1.117522636 1.200231763 1.097612565 1.165851696 1 16.19599763 -4.453840277 2.255744289 1.183742652 0.359912524 0.878190496 0.088653347 0.12934011 1.021806491 0.024254621 0.179379095 3.52E-05 4.453840277 -0.823830128 down CKS(ph)WITPCPEEK ddPTM_HeLa_A486_30min_R1 1 CKSWITPCPEEK 12 1 P80108 P80108 GPLD1 Phosphatidylinositol-glycan-specific phospholipase D 1 0 CKS(0.998)WIT(0.002)PCPEEK 65.092 0.011276 107280000 317860 187670 145260 34685 212430 333210 323110 274910 204940 208700 TRUE FALSE FALSE 295579.6554 172798.3457 201508.5622 80748.43288 185785.0486 292101.938 242264.4605 212318.9942 222704.3642 156440.1616 1.889410318 1.104565119 1.288087152 0.516161784 1.187578987 1.867179982 1.548607838 1.357189817 1.423575391 1 17.25525141 -6.038856063 24.57484922 1.475012061 1.155691486 0.088336395 0.36998113 899.0416123 568604.4621 0.1234873 0.123514205 9.14E-07 6.038856063 -0.319320575 CLAFHDIS(ph)PQAPTHFLVIPK ddPTM_HeLa_A485_30min_R1 1 CLAFHDISPQAPTHFLVIPK 20 0 P49773;D6REP8;D6RE99;D6RD60 P49773 HINT1 Histidine triad nucleotide-binding protein 1 1 0 CLAFHDIS(1)PQAPTHFLVIPK 172.61 6.72E-14 104100000 101200 89123 73252 132780 146530 111000 182000 187840 76151 163660 TRUE FALSE FALSE 123711.5909 99545.15958 100350.9631 140033.4352 131940.9587 116811.7884 143114.2132 141771.9455 91433.8072 122862.5739 1.006910297 0.810215482 0.816774058 1.139756646 1.073890563 0.950751597 1.164831638 1.153906686 0.744195765 1 16.90668599 -5.252519966 24.70968821 1.042724133 0.871191495 0.232997945 0.127342407 741.2966284 2053628.082 0.034239019 0.058125671 5.59E-06 5.252519966 -0.171532638 CLAFHDIS(ph)PQAPTHFLVIPK ddPTM_HeLa_A486_30min_R1 2 CLAFHDISPQAPTHFLVIPK 20 0 P49773;D6REP8;D6RE99;D6RD60 P49773 HINT1 Histidine triad nucleotide-binding protein 1 1 0 CLAFHDIS(1)PQAPTHFLVIPK;CLAFHDIS(0.999)PQAPT(0.001)HFLVIPK ; 168.84 1.11E-13 280690000 179273 217909 151803 103794 272390 264930 313130 306080 227900 315840 TRUE FALSE FALSE 166706.8885 200641.0972 210585.187 241637.6775 238224.3063 232245.6302 234781.562 236392.2657 247654.5555 236751.6082 0.704142581 0.847475118 0.889477324 1.020637956 1.006220435 0.980967487 0.991678848 0.998482196 1.046052263 1 17.8530147 -4.438701149 1.030542639 1.00754837 0.60863295 0.941159851 0.024198853 0.308034146 0.328557217 0.008188973 0.12712363 3.64E-05 4.438701149 -0.39891542 CLAFHDISPQAPTHFLVIPK ddPTM_HeLa_A485_30min_R1 3 CLAFHDISPQAPTHFLVIPK 20 0 P49773;D6REP8;D6RE99;D6RD60 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 ;; ;; 150.45 8.27E-11 168454000 140222 119377 108315 168789 197380 183903 273454 295683 105763 245230 FALSE FALSE TRUE 171413.9001 133337.1017 148385.2259 178009.5157 177728.1542 193531.8767 215028.319 223166.2806 126988.664 184098.6741 0.931097961 0.724269756 0.806009204 0.966924485 0.965396166 1.051239927 1.168005799 1.212210146 0.689785869 1 17.49011971 -5.504379292 1.899580619 1.039301016 0.809247177 0.266011663 0.140589444 0.413895477 2.990358291 0.045833036 0.073950112 3.13E-06 5.504379292 -0.23005384 CLAFHDISPQAPTHFLVIPK ddPTM_HeLa_A486_30min_R1 2 CLAFHDISPQAPTHFLVIPK 20 0 P49773;D6REP8;D6RE99;D6RD60 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 ; ; 202.07 1.65E-23 46083000 43139 69644 52505 22958 93324 96528 109642 105839 88697 104656 FALSE FALSE TRUE 40115.17887 64125.1558 72836.34213 53447.38423 81618.43371 84619.35678 82208.41193 81741.77015 96385.32738 78449.4564 0.511350629 0.817407268 0.92844929 0.681297063 1.040395147 1.078648096 1.047915635 1.041967324 1.22862964 1 16.25947583 -3.857239871 0.405321258 1.113326224 1.43E-13 0.699991508 0.110095869 4.453425659 0.449716313 0.08773535 2.566929503 0.000138919 3.857239871 -1.113326224 CLELFSELAEDK(ac)ENYKK ddPTM_HeLa_A486_30min_R1 1 CLELFSELAEDKENYKK 17 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 1 CLELFSELAEDK(0.5)ENYK(0.5)K 93.51 0.010379 19664000 38495 17243 6925.5 2575.2 13954 23007 38463 34635 20810 35225 FALSE TRUE FALSE 35796.69929 15876.60188 9607.239071 5995.195743 12203.7592 20168.63026 28839.15058 26749.36658 22613.82756 26404.43072 1.35570805 0.601285521 0.363849506 0.227052642 0.462186037 0.763835073 1.092208762 1.01306356 0.85644064 1 14.68849242 -6.538690242 4.505352614 0.988735254 0.569930271 0.286390227 0.286370378 0.26295217 13.35396575 0.117658136 0.093562455 2.89E-07 6.538690242 -0.418804983 CLELFTELAEDKENYK(ac)K ddPTM_HeLa_A486_30min_R1 1 CLELFTELAEDKENYKK 17 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 1 CLELFTELAEDK(0.001)ENYK(0.999)K 85.16 0.019154 24536000 16223 31336 13199 23996 36950 44710 56432 53968 26785 37837 FALSE TRUE FALSE 15085.85148 28852.82124 18310.00628 55863.90069 32315.38645 39194.13478 42312.11672 41680.66451 29106.74537 28362.36892 0.531896737 1.017292361 0.645573941 1.969648616 1.139375436 1.381906246 1.49184001 1.469576276 1.026245214 1 14.79169042 -5.224147091 24.99713306 1.371603244 0.760157963 0.495315728 0.287134475 462.3464401 309911.6627 0.07347661 0.127261271 5.97E-06 5.224147091 -0.611445281 CLGSLFSMLHQACR ddPTM_HeLa_A485_30min_R1 1 CLGSLFSMLHQACR 14 0 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 152.47 1.69E-06 10377000 6831 5993.8 4818.6 6672.7 8939.9 6672.8 10320 9789.6 5213.8 11174 FALSE FALSE TRUE 8350.532383 6694.722771 6601.200659 7037.212705 8049.812166 7022.17749 8115.047693 7388.685251 6260.161836 8388.527442 0.995470593 0.798080809 0.786931998 0.838909183 0.959621605 0.837116829 0.96739836 0.880808378 0.746276612 1 13.03420186 CLIKS(ph)PDR ddPTM_HeLa_A486_30min_R1 2 CLIKSPDR 8 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 CLIKS(1)PDR;CLIKS(1)PDR ; 82.171 0.0036466 845830000 1342260 1246010 667990 626350 1108050 1519210 1761480 1624300 1087560 1962360 TRUE FALSE FALSE 1248174.505 1147271.63 926653.6174 1458174.454 969068.0368 1331785.316 1320739.073 1254482.348 1181830.576 1470972.283 0.848537066 0.779941025 0.629959944 0.991299748 0.658794219 0.905377573 0.897868089 0.852825279 0.803434973 1 20.48833863 CLIKS(ph)PDRLADINYEGR ddPTM_HeLa_A485_30min_R1 2 CLIKSPDRLADINYEGR 17 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 CLIKS(1)PDRLADINYEGR;CLIKS(1)PDRLADINYEGR ; 175.93 5.41E-13 734440000 482610 532490 433710 776540 1172360 684140 1244630 1497910 525450 1203200 TRUE FALSE FALSE 589964.9295 594760.0735 594157.3772 818960.4139 1055635.722 719960.5125 978704.6328 1130545.224 630902.9953 903264.3833 0.653147562 0.658456244 0.657789002 0.906667449 1.168689635 0.797065096 1.083519566 1.251621612 0.698469913 1 19.7847888 -5.35545833 3.628714793 1.008491643 0.65426477 0.501213342 0.152647617 0.189123842 4.636380829 0.043020534 0.067372827 4.41E-06 5.35545833 -0.354226873 CLIKS(ph)PDRLADINYEGR ddPTM_HeLa_A486_30min_R1 2 CLIKSPDRLADINYEGR 17 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 CLIKS(1)PDRLADINYEGR;CLIKS(1)PDRLADINYEGR ; 152.95 1.57E-08 713470000 625690 524480 391410 428090 883550 740810 1086590 1169800 538460 936110 TRUE FALSE FALSE 581832.3621 482918.2947 542974.4343 996615.1545 772726.9202 649416.3942 814713.6892 903462.0766 585134.1463 701701.9629 0.829173057 0.688209981 0.773796374 1.420282694 1.101218125 0.925487498 1.161053741 1.287529641 0.833878452 1 19.42049887 -5.118219972 10.15166165 1.110857175 0.751885303 0.480436174 0.162167829 0.322951052 25.83239268 0.043345269 0.075193759 7.62E-06 5.118219972 -0.358971871 CLLADLPLPPELPGGDDLS(ph)KSPEEK ddPTM_HeLa_A486_30min_R1 2 CLLADLPLPPELPGGDDLSKSPEEK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 CLLADLPLPPELPGGDDLS(0.55)KS(0.45)PEEK;CLLADLPLPPELPGGDDLS(0.562)KS(0.438)PEEK ; 134.69 1.54E-06 143890000 208823 161180 49077 215370 127127 237770 366780 307370 131729 516840 TRUE FALSE FALSE 194185.5861 148407.5098 68080.92873 501392.2442 111181.5462 208436.3549 275007.7646 237388.5608 143147.3758 387419.8999 0.501227702 0.383066306 0.175729044 1.294182989 0.286979441 0.538011483 0.709844189 0.612742301 0.36948896 1 18.56353853 -11.57789917 2.074256806 8.152386333 0.547481561 0.181045074 0.29243595 9599794.935 470747.869 323649986.5 0.071530815 2.64E-12 11.57789917 -7.604904771 CLLADLPLPPELPGGDDLS(ph)KSPEEKK ddPTM_HeLa_A486_30min_R1 1 CLLADLPLPPELPGGDDLSKSPEEKK 26 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 CLLADLPLPPELPGGDDLS(0.5)KS(0.5)PEEKK 100.68 0.00066085 58052000 84059 56444 14412 106630 43061 102780 182720 139860 43329 270660 TRUE FALSE FALSE 78166.89818 51971.17187 19992.71237 248240.0288 37659.88785 90100.04859 137001.5234 108016.9311 47084.79261 202884.9743 0.385276921 0.256160773 0.098542105 1.223550584 0.185621868 0.444094241 0.675266978 0.532404785 0.232076292 1 17.6303025 -11.2070867 2.471968563 2.767252988 0.456312499 0.225542196 0.306463113 41866087.27 7598655.522 414857839 0.074941624 6.21E-12 11.2070867 -2.31094049 CLLADLPLPPELPGGDDLSKS(ph)PEEK ddPTM_HeLa_A485_30min_R1 1 CLLADLPLPPELPGGDDLSKSPEEK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 CLLADLPLPPELPGGDDLS(0.167)KS(0.833)PEEK 130.25 2.55E-06 74980000 111150 69021 46175 301920 135230 97231 215690 170700 70815 387590 TRUE FALSE FALSE 135874.934 77092.40555 63257.054 318413.1251 121766.0264 102321.8648 169606.0695 128835.5574 85026.92095 290970.9461 0.466970795 0.264948809 0.217399898 1.094312437 0.418481735 0.351656639 0.582896924 0.442778082 0.292217907 1 18.15051558 -10.71720894 2.737497476 1.090111296 0.463748946 0.321045947 0.235903111 74323346.96 62523759.38 45923834.15 0.060058308 1.92E-11 10.71720894 -0.626362349 CLRPHS(ph)SPR ddPTM_HeLa_A485_30min_R1 4 CLRPHSSPR 9 1 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 CLRPHS(0.596)S(0.404)PR;CLRPHS(0.801)S(0.199)PR;CLRPHS(0.5)S(0.5)PR;CLRPHS(0.5)S(0.5)PR ;;; 63.624 0.011827 467730000 351215 467794 401946 403409 582507 391045 567679 548133 344888 610529 TRUE FALSE FALSE 429341.5651 522498.439 550642.5518 425446.2122 524510.5578 411519.5115 446389.7441 413702.5223 414103.8581 458335.3563 0.936741098 1.139991563 1.201396629 0.928242184 1.144381621 0.89785679 0.973936961 0.902619701 0.903495339 1 18.80604405 -6.270728995 24.95574086 0.931892686 1.073438315 0.376306406 0.086505351 686.8256352 1845091.819 0.029738805 0.026584995 5.36E-07 6.270728995 0.141545629 CLRPHS(ph)SPR ddPTM_HeLa_A486_30min_R1 4 CLRPHSSPR 9 1 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 CLRPHS(0.5)S(0.5)PR;CLRPHS(0.5)S(0.5)PR;CLRPHS(0.5)S(0.5)PR;CLRPHS(0.5)S(0.5)PR ;;; 62.303 0.013132 466651000 416011 391031 309530 172389 471020 383578 476210 441277 344538 498240 TRUE FALSE FALSE 386850.7772 360044.2794 429388.3055 401330.3041 411940.2795 336256.0463 357057.2212 340807.8601 374402.8312 373477.461 1.035807559 0.964032149 1.149703397 1.074577039 1.102985648 0.900338257 0.956034188 0.91252591 1.002477714 1 18.51066165 -6.258263704 24.98688187 0.948918018 1.064979444 0.514821669 0.053822972 230.3082156 1812114.009 0.018529394 0.017796255 5.52E-07 6.258263704 0.116061425 CLRPHSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 CLRPHSSPR 9 1 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 CLRPHS(0.2)S(0.8)PR 82.171 0.003275 192810000 123490 163030 136570 143490 206120 130800 205300 187090 126310 203930 TRUE FALSE FALSE 150959.9245 182094.9403 187092.9262 151328.4954 185597.9691 137648.4857 161435.9779 141205.8842 151659.2584 153094.0041 0.986060332 1.189432215 1.222078731 0.988467813 1.212313769 0.899110887 1.054489226 0.92234758 0.990628336 1 17.22405826 -6.265186424 24.99762408 0.973535307 1.121946519 0.417313436 0.086448783 325.5430236 2171781.053 0.028765535 0.026321459 5.43E-07 6.265186424 0.148411212 CLRPHSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 CLRPHSSPR 9 1 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 CLRPHS(0.18)S(0.82)PR;CLRPHS(0.08)S(0.92)PR ; 69.815 0.0073084 418070000 369390 334710 256095 127938 403630 332910 413150 371310 300530 432070 TRUE FALSE FALSE 343497.6685 308186.3606 355261.8425 297846.1296 353002.9617 291838.949 309775.5001 286770.8186 326580.1824 323876.8597 1.060581077 0.951554121 1.09690406 0.919627694 1.089929555 0.901079964 0.956460738 0.885431639 1.008346761 1 18.30508587 -6.276009062 24.99440085 0.943490607 1.017993082 0.24644803 0.063279372 1096.739397 1881458.461 0.020467514 0.018127673 5.30E-07 6.276009062 0.074502475 CLVAGLLS(ph)PR ddPTM_HeLa_A485_30min_R1 3 CLVAGLLSPR 10 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 CLVAGLLS(1)PR;CLVAGLLS(1)PR;CLVAGLLS(1)PR ;; 148.18 4.44E-06 318125000 156214.29 214752.5 166469.9 169597.4 269676.1 157734 225876.7 253109.86 169109.4 256809.6 TRUE FALSE FALSE 190963.6199 239865.9368 228054.0434 178862.0765 242826.2006 165992.7083 177616.2978 191034.27 203048.1054 192791.693 0.990517885 1.244171536 1.182903889 0.927747839 1.259526263 0.860995128 0.921286053 0.990884343 1.053199452 1 17.55668336 -6.269941521 24.99729259 0.961954087 1.120523641 0.344873375 0.107248601 745.1197844 2190733.998 0.037146605 0.033262758 5.37E-07 6.269941521 0.158569553 CLVAGLLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 CLVAGLLSPR 10 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 CLVAGLLS(1)PR;CLVAGLLS(1)PR;CLVAGLLS(1)PR;CLVAGLLS(1)PR ;;; 144.1 5.76E-06 319343000 300285 295194 230829 128667 336533 280398 349168 321434 239218 329769 TRUE FALSE FALSE 279236.5722 271801.7524 320212.1706 299543.2785 294321.8931 245805.3456 261802.4733 248250.4951 259953.6088 247192.696 1.129631161 1.099554141 1.295394952 1.211780459 1.190657725 0.994387576 1.059102787 1.004279249 1.051623341 1 17.91527659 -6.255460725 24.75838733 1.024472554 1.188210279 0.710648611 0.052143767 251.1306563 1039965.591 0.018494828 0.018015446 5.55E-07 6.255460725 0.163737725 CLVFSLIGLHFK ddPTM_HeLa_A485_30min_R1 2 CLVFSLIGLHFK 12 0 F5H6P7;P61326-2;P61326;Q96A72 F5H6P7 MAGOHB;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 0 0 ; ; 164.43 2.44E-06 33102000 48924 34031 38585 61648 71398 27044 61983 42647 28632 93074 FALSE FALSE TRUE 59806.97501 38010.62942 52859.19716 65015.67414 64289.36443 28459.98202 48739.8257 32187.75638 34378.17977 69872.3647 0.855946056 0.544000902 0.756510781 0.930491968 0.920097161 0.407313852 0.697555119 0.46066505 0.492013973 1 16.09243435 -6.253374683 24.99057138 0.583179007 0.791785787 0.199618829 0.185346267 926.935598 2872354.244 0.06069521 0.059675937 5.58E-07 6.253374683 0.20860678 CLYASVLTAQPR ddPTM_HeLa_A485_30min_R1 1 CLYASVLTAQPR 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 220.87 1.68E-20 133270000 98165 126140 152670 144340 236630 122180 181130 201840 138720 299640 FALSE FALSE TRUE 120001.4656 140890.9757 209148.9861 152224.9287 213070.2863 128577.1559 142430.0958 152338.4235 166559.8316 224945.2625 0.533469628 0.626334488 0.929777244 0.67671987 0.947209486 0.571593082 0.633176686 0.677224414 0.740446052 1 17.77921446 -8.136931717 6.385783297 0.999999533 0.705828401 0.320821147 0.130157463 4.406411139 205.3233085 0.127440948 0.03304027 7.30E-09 8.136931717 -0.294171132 CLYASVLTAQPR ddPTM_HeLa_A486_30min_R1 2 CLYASVLTAQPR 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 275.63 3.00E-50 281160000 243440 322680 299680 127238 432680 307430 389920 364890 283390 311120 FALSE FALSE TRUE 226376.1131 297109.6616 415724.1217 296216.4943 378409.2398 269502.4123 292357.8918 281812.5125 307954.4734 233213.5269 0.970681744 1.273981254 1.782590089 1.270151428 1.622587012 1.15560369 1.253606065 1.208388365 1.320482896 1 17.83129195 -6.325414568 24.99907838 1.204764716 1.393707964 0.166685074 0.217325039 425.9543426 166445.237 0.077504407 0.068352472 4.73E-07 6.325414568 0.188943248 CMPTFQFFK ddPTM_HeLa_A485_30min_R1 2 CMPTFQFFK 9 0 P10599;P10599-2 P10599 TXN Thioredoxin 0 0 ; ; 176.09 9.30E-08 87327000 115119 108492 107960 155388 181771 109872 185062 164453 108015 207120 FALSE FALSE TRUE 140726.8244 121179.1956 147898.8966 163876.453 163673.241 115624.728 145521.9919 124120.6439 129692.6197 155488.7958 0.905060868 0.779343586 0.951186842 1.053943805 1.052636881 0.743620963 0.93590018 0.798261015 0.834096239 1 17.2464511 -6.260228426 24.99764752 0.854362278 0.945055005 0.15861626 0.098085945 219.6996244 4535257.128 0.035092909 0.033253435 5.49E-07 6.260228426 0.090692727 CMPTFQFFK ddPTM_HeLa_A486_30min_R1 3 CMPTFQFFK 9 0 P10599;P10599-2 P10599 TXN Thioredoxin 0 0 ;; ;; 167.23 6.42E-06 162887000 205060 241945 169373 105784 308312 252068 302464 303637 213395 284916 FALSE FALSE TRUE 190686.3529 222772.3971 234958.7616 246270.498 269640.6341 220970.413 226784.3081 234505.4834 231892.2504 213571.1791 0.892846843 1.043082676 1.100142644 1.153107358 1.262532872 1.034645283 1.061867566 1.098020269 1.085784381 1 17.70435745 -4.300381198 2.187190132 1.107082424 0.847348252 0.457510213 0.067561105 0.529800472 3.103172108 0.018688537 0.25968865 5.01E-05 4.300381198 -0.259734171 CMVEVPQELETS(ph)TGHSLEK ddPTM_HeLa_A485_30min_R1 1 CMVEVPQELETSTGHSLEK 19 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CMVEVPQELET(0.002)S(0.975)T(0.023)GHSLEK 210.88 3.80E-26 114490000 130710 143640 114330 152600 202800 123530 195630 159520 126080 232050 TRUE FALSE FALSE 159785.9886 160437.4485 156625.4247 160936.1516 182608.5199 129997.8398 153832.0523 120397.4699 151383.0995 174204.2056 0.917233818 0.920973452 0.89909095 0.923836202 1.048244038 0.74623824 0.883055905 0.691128377 0.868997962 1 17.41041993 -6.272527426 24.96423615 0.821402863 0.937335336 0.253773884 0.086719021 884.6735811 1991797.536 0.028834948 0.025669398 5.34E-07 6.272527426 0.115932473 CMVEVPQELETS(ph)TGHSLEK ddPTM_HeLa_A486_30min_R1 2 CMVEVPQELETSTGHSLEK 19 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CMVEVPQELET(0.026)S(0.948)T(0.026)GHSLEK;CMVEVPQELET(0.041)S(0.902)T(0.056)GHS(0.001)LEK ; 156.74 3.59E-09 111300000 268850 257480 163935 79666 275040 271910 299690 285540 212727 276740 TRUE FALSE FALSE 250005.0033 237076.3471 227415.0223 185466.4741 240541.9186 238364.5088 224704.3922 220528.7753 231166.3476 207442.5027 1.205177339 1.142853292 1.096279785 0.894062073 1.15955947 1.149063021 1.083212887 1.063083854 1.114363472 1 17.66235199 -1.000001596 0.011175747 2.30E-07 2.34303929 0.149856342 0.078386644 24172.63077 20.92484556 1857.35685 2585.279795 0.099999632 1.000001596 2.343039059 CMVEVPQELETST(ph)GHSLEK ddPTM_HeLa_A485_30min_R1 1 CMVEVPQELETSTGHSLEK 19 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CMVEVPQELET(0.003)S(0.397)T(0.519)GHS(0.081)LEK 90.534 0.00076037 141940000 106680 99768 84155 132050 145240 101010 131080 127240 101690 171030 TRUE FALSE FALSE 130410.598 111434.9997 115287.4365 139263.5571 130779.3956 106298.7274 103073.6872 96034.1905 122098.2502 128395.3686 1.015695499 0.867905135 0.897909619 1.084646266 1.018567859 0.827901571 0.80278353 0.747956812 0.950955253 1 16.97023364 -6.269319224 24.64470269 0.846220734 0.972479676 0.265610375 0.08919931 629.6960746 1969407.339 0.031835072 0.028582305 5.38E-07 6.269319224 0.126258942 CNDSLRHS(ph)PK ddPTM_HeLa_A485_30min_R1 3 CNDSLRHSPK 10 1 A6NHR9;J3KTK7;A0A2R8YCU7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 1 0 CNDSLRHS(1)PK;CNDS(0.058)LRHS(0.942)PK;CNDS(0.026)LRHS(0.974)PK ;; 101.62 0.00070344 363137000 523153 552195 371203 755016 872849 504013 963269 911716 469804 1211529 TRUE FALSE FALSE 639526.58 616769.4018 508526.4367 796260.6123 785945.0888 530402.3413 757458.709 688116.2215 564089.3535 909517.1168 0.703149581 0.678128416 0.55911695 0.875476225 0.864134467 0.583169169 0.832814133 0.756573141 0.620207518 1 19.79474126 -11.26623038 2.314944857 2.146850371 0.722580039 0.37980954 0.107569136 10392530.3 1545875.673 62477784.21 0.027101419 5.42E-12 11.26623038 -1.424270333 CNDSLRHS(ph)PK ddPTM_HeLa_A486_30min_R1 4 CNDSLRHSPK 10 1 A6NHR9;J3KTK7;A0A2R8YCU7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 1 0 CNDS(0.066)LRHS(0.934)PK;CNDSLRHS(1)PK;CNDS(0.134)LRHS(0.866)PK;CNDS(0.067)LRHS(0.933)PK ;;; 95.264 0.0011825 426436000 977301 837308 410631 193008 822380 1022789 1516614 1207555 814421 1270681 TRUE FALSE FALSE 908797.2467 770956.6647 569638.3203 449332.3781 719229.432 896607.6921 1137141.136 932621.0872 885015.668 952494.2069 0.954123647 0.809408245 0.598049118 0.471742899 0.755101109 0.941326137 1.193856223 0.979135706 0.929155959 1 19.86135079 -6.29916599 3.547506217 1.026844303 0.699172416 0.541465165 0.135147806 0.197798302 5.225579222 0.053852242 0.04876397 5.02E-07 6.29916599 -0.327671887 CNVRDS(ph)PTEENKGGLK ddPTM_HeLa_A486_30min_R1 1 CNVRDSPTEENKGGLK 16 2 E9PQ01 E9PQ01 PCF11 1 0 CNVRDS(0.993)PT(0.007)EENKGGLK 143.04 3.99E-08 318060000 191470 134400 71518 116610 168410 227190 313250 275680 137280 331480 TRUE FALSE FALSE 178048.9418 123749.6545 99211.68492 271473.9731 147286.4474 199161.6077 234871.5368 212913.6821 149179.5409 248475.2504 0.716566102 0.49803614 0.39928196 1.092559411 0.592761038 0.801534991 0.945251233 0.856880843 0.60037988 1 17.92274263 -5.244889052 24.99350196 0.827688776 0.533968877 0.411184492 0.165782589 827.3878893 1249479.312 0.043833298 0.075641238 5.69E-06 5.244889052 -0.293719899 CPEALFQPSFLGMESCGIHETTFNSIMK ddPTM_HeLa_A485_30min_R1 5 CPEALFQPSFLGMESCGIHETTFNSIMK 28 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 190.6 3.22E-26 206838000 95417.2 100576.9 106525.8 77805.5 187636.5 90925.8 152702.2 130088 112626.6 145430.3 FALSE FALSE TRUE 116642.427 112338.4936 145934.1263 82055.81745 168954.7512 95686.53429 120076.1275 98183.71403 135229.7255 109177.2027 1.068377135 1.028955595 1.336672151 0.751583806 1.547527754 0.876433284 1.099827845 0.899306006 1.238626034 1 16.73631211 CPEALFQPSFLGMESCGIHETTFNSIMK ddPTM_HeLa_A486_30min_R1 3 CPEALFQPSFLGMESCGIHETTFNSIMK 28 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;; ;; 188.41 5.85E-20 147624000 94353.6 104755 100841.3 13587.4 159738 100262.9 134092.9 136430.5 124683.6 69509.4 FALSE FALSE TRUE 87739.89988 96453.83229 139889.752 31632.15387 139702.1705 87893.4828 100541.4381 105368.2534 135491.2748 52103.79381 1.683944555 1.851186358 2.684828527 0.607098861 2.681228378 1.686892189 1.929637571 2.022276032 2.600410928 1 15.6691008 CPFPAGAALACCS(ph)EDEEDDEEHEGGGS(ph)RSPAGGESATVAAK ddPTM_HeLa_A486_30min_R1 1 CPFPAGAALACCSEDEEDDEEHEGGGSRSPAGGESATVAAK 41 1 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 2 0 CPFPAGAALACCS(1)EDEEDDEEHEGGGS(0.555)RS(0.443)PAGGES(0.002)ATVAAK 118.95 1.55E-06 179030000 31269 29453 23951 12083 29438 24368 32636 33580 17420 20918 TRUE FALSE FALSE 29077.20457 27119.03701 33225.46863 28129.83464 25745.61154 21361.72392 24470.12761 25934.56705 18929.97963 15679.99665 1.854413954 1.729530792 2.118971667 1.79399494 1.641939863 1.362355133 1.560595207 1.653990599 1.207269367 1 13.93663763 -7.291754711 0.280893763 0.914843501 2.029191182 0.745909224 0.156573056 0.928077943 0.272185237 0.351752551 0.376514761 5.11E-08 7.291754711 1.114347682 CPGK(ac)APR ddPTM_HeLa_A485_30min_R1 1 CPGKAPR 7 1 X6R7D6;A0A087WTI0;A0A087WTQ9;A0A0A0MRC2;Q8WY21-4;Q8WY21;Q8WY21-3;Q8WY21-2 X6R7D6 SORCS1 VPS10 domain-containing receptor SorCS1 0 1 CPGK(1)APR 76.847 0.035888 0 0 0 0 0 0 0 919.7 449.99 586.16 319.84 FALSE TRUE FALSE 0 0 0 0 0 0 723.1985817 339.6292469 703.7969354 240.1097742 0 0 0 0 0 0 3.01194978 1.414474892 2.931146546 1 7.907550323 -6.745924706 24.93517877 2.123932236 5.43E-07 0.765578284 0.566279546 96.48115521 155064.5283 0.196197149 0.151413667 1.80E-07 6.745924706 -2.123931693 CPLLKPWALTFSYGR ddPTM_HeLa_A485_30min_R1 2 CPLLKPWALTFSYGR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 251.87 1.02E-40 1630690000 1019270 938970 772110 1306880 1362730 961600 1922080 1492860 594870 1796650 FALSE FALSE TRUE 1246003.095 1048774.374 1057745.619 1378271.545 1227051.816 1011947.889 1511411.906 1126733.744 714254.9525 1348778.22 0.923801316 0.777573628 0.784225015 1.021866697 0.909750616 0.75027004 1.120578523 0.83537362 0.529557004 1 20.36322171 -10.29622019 5.275272698 1.000027597 0.857606692 0.077391854 0.153185664 4.96E-05 6.62E-06 0.147953146 0.03587696 5.06E-11 10.29622019 -0.142420905 CPLLKPWALTFSYGR ddPTM_HeLa_A486_30min_R1 2 CPLLKPWALTFSYGR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 206.43 2.18E-16 1544590000 584520 685570 479500 374980 721060 759270 1129260 902360 723860 1174290 FALSE FALSE TRUE 543548.1665 631242.9364 665175.2415 872972.3904 630617.9312 665598.9871 846707.2039 696912.3264 786604.7676 880240.1407 0.617499863 0.717125824 0.755674742 0.991743446 0.716415785 0.75615614 0.961904786 0.791729773 0.893625195 1 19.74753764 -2.052772824 0.193686755 0.958828017 4.65E-35 0.476882149 0.091139101 36.82605212 0.620058682 0.192721065 9.774231184 0.008855787 2.052772824 -0.958828017 CPLPCIPTLIGT(ph)PVK ddPTM_HeLa_A485_30min_R1 2 CPLPCIPTLIGTPVK 15 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 CPLPCIPTLIGT(1)PVK;CPLPCIPTLIGT(1)PVK ; 136.33 4.19E-05 246480000 247927 159315 139043 413860 291290 147322 262213 188216 179657 586900 TRUE FALSE FALSE 303077.5058 177945.5034 190480.7918 436468.1239 262288.1448 155035.5521 206189.0505 142055.7309 215712.512 440596.6311 0.687879762 0.403873954 0.432324667 0.990629735 0.595302202 0.35187639 0.467976911 0.322416743 0.489591832 1 18.74909894 -10.45678516 11.79906294 0.999985196 0.523235801 0.367085939 0.186319129 9.65E-07 4.45E-08 0.191301 0.046397289 3.49E-11 10.45678516 -0.476749395 CPLPCIPTLIGT(ph)PVK ddPTM_HeLa_A486_30min_R1 2 CPLPCIPTLIGTPVK 15 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 CPLPCIPT(0.007)LIGT(0.993)PVK;CPLPCIPTLIGT(1)PVK ; 174.62 7.67E-12 299140000 276890 389630 225910 179945 360120 481080 475590 444530 350050 468830 TRUE FALSE FALSE 257481.4409 358754.2998 313388.4021 418921.0539 314950.3916 421729.2409 356592.3517 343320.223 380392.6158 351431.9164 0.732663793 1.020835852 0.891747128 1.192040433 0.896191771 1.200031133 1.014684026 0.976918165 1.08240771 1 18.42288569 -3.671353505 1.203066927 1.042584956 2.25E-15 0.44632438 0.099503837 4.813895331 2.181272617 0.027436591 8.856506894 0.000213131 3.671353505 -1.042584956 CPPS(ph)KK ddPTM_HeLa_A486_30min_R1 1 CPPSKK 6 1 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 CPPS(1)KK 64.757 0.020378 293770000 697280 738560 448130 310230 832300 769070 975290 933980 574820 969120 TRUE FALSE FALSE 648404.2728 680033.8158 621657.9373 722231.1182 727905.1731 674189.9627 731262.1264 721333.1426 624645.8604 726446.0441 0.89257045 0.936110564 0.855752388 0.994197882 1.002008586 0.928066122 1.006629649 0.99296176 0.859865458 1 19.47049612 -5.270972975 24.99069816 0.970035604 0.898941076 0.348567586 0.046427368 745.7825416 1954941.038 0.012794526 0.019276056 5.36E-06 5.270972975 -0.071094528 CPS(ph)PINEHNGLIK ddPTM_HeLa_A485_30min_R1 4 CPSPINEHNGLIK 13 0 A0A087X1M6;G5E9X3;Q9Y2H6-2;Q9Y2H6 A0A087X1M6 FNDC3A Fibronectin type-III domain-containing protein 3A 1 0 CPS(1)PINEHNGLIK;CPS(1)PINEHNGLIK;CPS(1)PINEHNGLIK;CPS(1)PINEHNGLIK ;;; 200.69 1.37E-21 1469380000 1461550 1308200 761801 1552530 1039680 1151580 1340240 1612110 1029340 3132790 TRUE FALSE FALSE 1786666.755 1461182.61 1043622.891 1637340.783 936165.8087 1211874.948 1053886.775 1216737.495 1235919.096 2351843.108 0.759687902 0.621292554 0.443746816 0.696194732 0.398056233 0.515287327 0.448111004 0.517354874 0.525510861 1 21.16536039 -10.2231912 4.745892697 1.000094309 0.541640307 0.608992507 0.108751082 0.000108823 1.78E-05 0.105591887 0.025604554 5.98E-11 10.2231912 -0.458454002 CPS(ph)PINEHNGLIK ddPTM_HeLa_A486_30min_R1 2 CPSPINEHNGLIK 13 0 A0A087X1M6;G5E9X3;Q9Y2H6-2;Q9Y2H6 A0A087X1M6 FNDC3A Fibronectin type-III domain-containing protein 3A 1 0 CPS(1)PINEHNGLIK;CPS(1)PINEHNGLIK ; 181.51 3.14E-17 1120220000 1287400 985630 626440 303270 981320 1046620 1015850 872190 1016080 1457720 TRUE FALSE FALSE 1197159.908 907525.0892 869014.3446 706027.8864 858233.6952 917498.6657 761673.5854 673611.3768 1104154.633 1092697.424 1.095600559 0.830536496 0.795292755 0.64613302 0.785426667 0.839663978 0.697058096 0.616466519 1.010485253 1 20.05946253 -4.237776836 2.586684409 0.777480503 1.173167348 0.321363986 0.125571947 0.574812449 4.725181464 0.031066553 0.508056706 5.78E-05 4.237776836 0.395686845 CPS(ph)PT(ph)MSLPSSWKYPTNAPGAFR ddPTM_HeLa_A485_30min_R1 1 CPSPTMSLPSSWKYPTNAPGAFR 23 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 CPS(1)PT(0.566)MS(0.433)LPS(0.001)SWKYPTNAPGAFR 105.46 0.00023428 119140000 65897 74562 48436 45992 102720 79731 147620 210000 59260 60475 TRUE FALSE FALSE 80555.56031 83281.3773 66354.49199 48504.4265 92492.83613 83905.59187 116079.7811 158497.1707 71152.93844 45399.69546 1.774363451 1.834403875 1.461562491 1.068386605 2.037300805 1.848153187 2.556840522 3.491150527 1.567255853 1 15.470395 -6.315580629 2.103083662 2.332289484 1.573290427 0.092958721 0.659582348 0.525142135 4.562226105 0.26320139 0.233290915 4.84E-07 6.315580629 -0.758999057 CPS(ph)PTMS(ph)LPSSWK ddPTM_HeLa_A486_30min_R1 1 CPSPTMSLPSSWK 13 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 CPS(0.999)PT(0.045)MS(0.953)LPS(0.002)SWK 100.11 0.0016657 113510000 144710 204540 144560 123810 202870 272660 323440 316470 174170 231880 TRUE FALSE FALSE 134566.5763 188331.5055 200537.5035 288235.937 177424.1529 239021.9814 242511.891 244416.6895 189267.1958 173815.7387 0.774190975 1.083512384 1.153736163 1.658284452 1.020759997 1.37514579 1.395224004 1.406182727 1.088895616 1 17.4071992 -4.425456299 1.817739838 1.29450497 0.706243743 0.371693775 0.194584858 0.590156693 2.587343228 0.051394375 0.532079523 3.75E-05 4.425456299 -0.588261227 CPS(ph)PTMS(ph)LPSSWKYPTNAPGAFR ddPTM_HeLa_A485_30min_R1 1 CPSPTMSLPSSWKYPTNAPGAFR 23 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 CPS(0.997)PT(0.214)MS(0.785)LPS(0.002)S(0.002)WKYPTNAPGAFR 100.41 0.00087837 114440000 145690 162390 95038 102770 226800 200930 395440 474380 142030 161100 TRUE FALSE FALSE 178098.2379 181380.0979 130196.5111 108384.0649 204218.9957 211450.3841 310951.0136 358037.5612 170534.1182 120940.7348 1.472607539 1.49974364 1.076531503 0.896175015 1.688587356 1.748380183 2.5711024 2.960438116 1.41006352 1 16.88394072 -6.213159926 2.33721872 2.131001994 1.255312768 0.229631591 0.555454806 0.359644043 3.860931987 0.209266752 0.199507213 6.12E-07 6.213159926 -0.875689226 CPS(ph)PTMSLPSSWK ddPTM_HeLa_A485_30min_R1 3 CPSPTMSLPSSWK 13 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.97)PT(0.03)MSLPSSWK;CPS(0.725)PT(0.275)MSLPSSWK;CPS(0.535)PT(0.352)MS(0.114)LPSSWK ;; 190.37 1.83E-17 1208710000 1274490 1178870 1005384 1630650 1706140 1284740 1652590 1502070 1249480 2407940 TRUE FALSE FALSE 1557995.904 1316728.592 1377317.379 1719728.28 1536270.711 1352007 1299500.646 1133684.977 1500239.175 1807684.873 0.861873619 0.728406047 0.761923386 0.951342962 0.849855378 0.747921842 0.718875654 0.62714746 0.829922957 1 20.78571177 -6.267991946 23.80666594 0.757351675 0.827882031 0.012749917 0.106674335 718.256523 2609543.654 0.036841975 0.033293058 5.40E-07 6.267991946 0.070530356 CPS(ph)PTMSLPSSWK ddPTM_HeLa_A486_30min_R1 5 CPSPTMSLPSSWK 13 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.89)PT(0.11)MSLPSSWK;CPS(0.991)PT(0.009)MSLPSSWK;CPS(0.999)PT(0.001)MSLPSSWK;CPS(0.789)PT(0.161)MS(0.05)LPSSWK;CPS(0.761)PT(0.218)MS(0.021)LPSSWK ;;;; 224.43 1.68E-27 2697460000 3193770 3110480 1747890 1274160 2906850 3258330 3686450 3458220 2543320 3371870 TRUE FALSE FALSE 2969903.216 2863994.237 2424719.818 2966308.872 2542245.768 2856350.373 2764061.219 2670858.798 2763777.025 2527531.805 1.175021106 1.133118971 0.959323168 1.173599029 1.005821475 1.13009473 1.093581182 1.056706307 1.093468743 1 21.26929782 -7.578179353 0.010858588 6.19E-07 2.13307398 0.170019333 0.064710077 1728.525406 18.29877246 1802.369167 1788.886202 2.64E-08 7.578179353 2.133073361 CPS(ph)PTMSLPSSWKYPTNAPGAFR ddPTM_HeLa_A485_30min_R1 2 CPSPTMSLPSSWKYPTNAPGAFR 23 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.997)PT(0.003)MSLPSSWKYPTNAPGAFR;CPS(0.985)PT(0.015)MSLPSSWKYPTNAPGAFR ; 163.16 1.44E-14 2753500000 449750 902360 529440 338930 833810 913010 1075940 1820270 525300 444490 TRUE FALSE FALSE 549795.3359 1007883.153 725301.8878 357444.8877 750792.9487 960813.7918 846056.6294 1373845.928 630722.8917 333686.8232 1.647638737 3.020446366 2.173600626 1.071198689 2.249992797 2.879387872 2.535481087 4.11717165 1.890164213 1 18.34813519 -6.01050794 24.09190856 2.669369444 2.015868358 0.049066998 0.872592142 734.8956681 1684925.604 0.273784225 0.291638589 9.76E-07 6.01050794 -0.653501087 CPS(ph)PTMSLPSSWKYPTNAPGAFR ddPTM_HeLa_A486_30min_R1 1 CPSPTMSLPSSWKYPTNAPGAFR 23 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.873)PT(0.124)MS(0.003)LPSSWKYPTNAPGAFR 116.35 5.06E-05 723380000 259450 165350 132180 98659 261710 157700 245110 260200 127740 266210 TRUE FALSE FALSE 241263.8948 152247.0638 183363.6359 229683.1379 228883.8915 138244.5774 183780.8855 200958.1401 138812.6061 199549.2833 1.209044156 0.762954701 0.918888973 1.151009586 1.147004327 0.692784134 0.920979933 1.007060195 0.695630692 1 17.60638557 -6.249857707 24.97583373 0.867337804 1.022197685 0.234009379 0.156496598 1315.137283 2836089.917 0.052734048 0.052299705 5.63E-07 6.249857707 0.154859881 CPS(ph)QSSSRPAAMISQPPTPPTGQPVR ddPTM_HeLa_A486_30min_R1 2 CPSQSSSRPAAMISQPPTPPTGQPVR 26 1 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 CPS(0.9)QS(0.037)S(0.049)S(0.014)RPAAMISQPPTPPTGQPVR;CPS(0.927)QS(0.024)S(0.037)S(0.012)RPAAMISQPPTPPTGQPVR ; 194.99 2.59E-21 922190000 87535 78195 71442 36270 103487 90886 97704 89113 103009 90586 TRUE FALSE FALSE 81399.24853 71998.54342 99106.25568 84438.39298 90506.69548 79673.40938 73257.42579 68823.91522 111937.9031 67902.67598 1.198763485 1.060319676 1.459533873 1.243520845 1.332888493 1.173347121 1.078859187 1.013567054 1.648505032 1 16.05118081 -6.310809535 23.69116336 1.177203761 1.25824749 0.036442342 0.1946812 864.3301967 414761.1422 0.06765815 0.059669049 4.89E-07 6.310809535 0.08104373 CPS(ph)QSSSRPAAMISQPPTPPTGQPVREDAK ddPTM_HeLa_A485_30min_R1 4 CPSQSSSRPAAMISQPPTPPTGQPVREDAK 30 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 CPS(0.999)QS(0.001)SSRPAAMISQPPTPPTGQPVREDAK;CPS(0.999)QSSS(0.001)RPAAMISQPPTPPTGQPVREDAK;CPS(0.999)QS(0.001)S(0.001)SRPAAMISQPPTPPTGQPVREDAK;CPS(0.976)QS(0.021)S(0.003)SRPAAMISQPPTPPTGQPVREDAK ;;; 224.51 3.69E-39 2029030000 366007 308757 266335 480639 502249 329545 596536 555362 300461 646653 TRUE FALSE FALSE 447423.9944 344863.4453 364863.3996 506895.0915 452243.3261 346799.4666 469081.2103 419158.5987 360760.7667 485454.3079 0.921660365 0.710393213 0.75159164 1.04416643 0.931587832 0.714381273 0.966272629 0.863435738 0.74314052 1 18.88897599 -11.47714094 2.300237764 2.869920767 0.850638757 0.142722931 0.110537712 13186417.44 939720.5816 129534799.6 0.029866884 3.33E-12 11.47714094 -2.01928201 CPS(ph)QSSSRPAAMISQPPTPPTGQPVREDAK ddPTM_HeLa_A486_30min_R1 3 CPSQSSSRPAAMISQPPTPPTGQPVREDAK 30 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 CPS(0.98)QS(0.005)S(0.003)S(0.012)RPAAMISQPPTPPTGQPVREDAK;CPS(0.996)QS(0.002)S(0.002)SRPAAMISQPPTPPTGQPVREDAK;CPS(1)QSSSRPAAMISQPPTPPTGQPVREDAK ;; 184.03 4.54E-21 1873210000 320325 267096 153156 134443 284603 304919 406608 414568 225563 408722 TRUE FALSE FALSE 297871.8717 245930.3402 212462.1049 312990.0984 248905.4379 267301.194 304870.3777 320179.9164 245114.9825 306375.3509 0.972244898 0.802709289 0.693469968 1.021590338 0.81241992 0.872463118 0.995087813 1.04505769 0.800047986 1 18.22494071 -6.67592388 6.040415284 0.963442579 0.855860257 0.173876702 0.103872235 0.355742458 19.91528077 0.039933551 0.030578374 2.11E-07 6.67592388 -0.107582323 CPS(ph)RS(ph)QS(ph)S(ph)ES(ph)R ddPTM_HeLa_A485_30min_R1 1 CPSRSQSSESR 11 1 A7MD48 A7MD48 SRRM4 Serine/arginine repetitive matrix protein 4 5 0 CPS(1)RS(1)QS(1)S(1)ES(1)R 42.785 0.0093681 0 7166.8 8640.5 13090 5264 11890 6427.4 5617.5 8475.4 8206.4 10273 TRUE FALSE FALSE 8761.029935 9650.931313 17932.53572 5551.558991 10706.18985 6763.928725 4417.275234 6396.794861 9853.349206 7712.130161 1.136006493 1.251396321 2.32523769 0.719847678 1.388227329 0.877050644 0.572769798 0.829445915 1.277643012 1 12.91291369 -5.323233518 24.99995149 0.9442685 1.538947817 0.366985693 0.371581019 248.3029934 100454.8887 0.105953429 0.157154352 4.75E-06 5.323233518 0.594679318 CPSDSSAEGASVPERPDEGIDSHTFESIS(ph)EDDSSLSHLK ddPTM_HeLa_A485_30min_R1 1 CPSDSSAEGASVPERPDEGIDSHTFESISEDDSSLSHLK 39 1 F5H8K3;A0A087X169;Q5T6S3 F5H8K3 PHF19 PHD finger protein 19 1 0 CPSDSSAEGASVPERPDEGIDSHT(0.001)FES(0.175)IS(0.805)EDDS(0.009)S(0.009)LS(0.002)HLK 160.19 7.50E-15 113910000 57219 77050 52485 56328 89743 73410 98662 108910 64099 88811 TRUE FALSE FALSE 69947.16915 86060.32725 71901.38558 59405.05601 80807.87181 77253.63409 77582.05771 82199.65174 76963.08135 66672.05215 1.049122787 1.290800635 1.078433666 0.891003863 1.212020168 1.158710908 1.163636864 1.23289518 1.154352969 1 16.02479451 CPSDSSAEGASVPERPDEGIDSHTFESIS(ph)EDDSSLSHLK ddPTM_HeLa_A486_30min_R1 1 CPSDSSAEGASVPERPDEGIDSHTFESISEDDSSLSHLK 39 1 F5H8K3;A0A087X169;Q5T6S3 F5H8K3 PHF19 PHD finger protein 19 1 0 CPSDSSAEGASVPERPDEGIDSHTFES(0.115)IS(0.519)EDDS(0.115)S(0.115)LS(0.135)HLK 83.531 0.00016259 82042000 21303 21845 20896 5870.7 28875 24046 22433 22105 21270 20897 TRUE FALSE FALSE 19809.76971 20113.92264 28987.49081 13667.28629 25253.22825 21079.449 16820.02613 17072.17405 23113.70073 15664.25518 1.264648046 1.284065052 1.850550216 0.872514277 1.612156337 1.345703882 1.073783971 1.089880997 1.475569726 1 13.93518855 -6.65157072 6.740332416 1.168316841 1.380153985 0.134593522 0.263336509 0.464371919 25.89194995 0.097934027 0.07540899 2.23E-07 6.65157072 0.211837144 CPSPT(ph)MSLPSSWK ddPTM_HeLa_A485_30min_R1 1 CPSPTMSLPSSWK 13 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.28)PT(0.72)MSLPSSWK 200.21 9.38E-21 200780000 174860 167290 130040 223370 230190 161620 209970 184590 154560 313170 TRUE FALSE FALSE 213757.0037 186853.1103 178147.2074 235572.1375 207271.4754 170082.1733 165108.1942 139319.0131 185578.7743 235102.4825 0.90920777 0.794773021 0.757742775 1.001997661 0.881621807 0.723438441 0.702281798 0.592588439 0.789352679 1 17.84293025 -6.263162613 24.71098404 0.732365889 0.866141256 0.156371278 0.115235842 196.8384047 2822624.961 0.038920162 0.036092824 5.46E-07 6.263162613 0.133775368 CPSPT(ph)MSLPSSWKYPTNAPGAFR ddPTM_HeLa_A486_30min_R1 1 CPSPTMSLPSSWKYPTNAPGAFR 23 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.047)PT(0.933)MS(0.019)LPSSWKYPTNAPGAFR 121.02 3.93E-05 574830000 192820 133200 100540 58984 216150 114940 181800 209400 94132 214820 TRUE FALSE FALSE 179304.3137 122644.7469 139471.7806 137317.7329 189038.4515 100759.8714 136311.7171 161724.1912 102291.4376 161027.6738 1.113499994 0.761637699 0.866135474 0.852758595 1.173950086 0.625730156 0.846511124 1.004325452 0.635241354 1 17.29694912 -6.276068544 24.98045057 0.824141335 0.932470985 0.131314251 0.164306227 2069.372378 3533605.221 0.056482812 0.050020126 5.30E-07 6.276068544 0.10832965 CPSRS(ph)QS(ph)S(ph)ES(ph)R ddPTM_HeLa_A485_30min_R1 1 CPSRSQSSESR 11 1 A7MD48 A7MD48 SRRM4 Serine/arginine repetitive matrix protein 4 4 0 CPS(0.681)RS(0.773)QS(0.773)S(0.773)ES(1)R 48.659 0.0082175 0 0 0 12088 0 10123 0 5131.3 5654.7 0 7789.7 TRUE FALSE FALSE 0 0 16559.85422 0 9115.118576 0 4034.955836 4267.875959 0 5847.871149 0 0 2.831774812 0 1.558707151 0 0.689987131 0.729817031 0 1 12.51369581 -6.279011694 24.80664411 0.479951145 0.889067928 0.049579604 0.862064822 2719.103447 3838516.493 0.300574746 0.265668581 5.26E-07 6.279011694 0.409116783 CPT(ph)PEIQKK ddPTM_HeLa_A485_30min_R1 3 CPTPEIQKK 9 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 CPT(1)PEIQKK;CPT(1)PEIQKK;CPT(1)PEIQKK ;; 98.902 0.0018252 3020000000 2984630 2532300 1497970 3799800 3375370 3260880 5155200 5364100 2212660 5054500 TRUE FALSE FALSE 3648550.647 2828430.457 2052131.439 4007373.452 3039306.311 3431614.635 4053749.406 4048546.064 2656720.566 3794506.171 0.961535041 0.745401464 0.540816472 1.05609881 0.800975456 0.904363962 1.068320678 1.066949395 0.700149228 1 21.85548071 -5.28002241 24.99480901 0.942965915 0.748866 0.26592672 0.147062497 1076.245148 1447584.104 0.041673486 0.061935146 5.25E-06 5.28002241 -0.194099916 CPT(ph)PEIQKK ddPTM_HeLa_A486_30min_R1 4 CPTPEIQKK 9 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 CPT(1)PEIQKK;CPT(1)PEIQKK;CPT(1)PEIQKK;CPT(1)PEIQKK ;;; 105.25 0.001011 3188880000 4698200 3897900 1735760 2171510 3842240 4641600 5939200 5557000 3147640 6841300 TRUE FALSE FALSE 4368880.442 3589016.208 2407892.757 5055385.022 3360310.432 4068966.584 4453149.342 4291792.408 3420479.97 5128193.951 0.851933543 0.699859686 0.469540111 0.985802228 0.655261962 0.793450213 0.868366014 0.836901344 0.666995048 1 22.2900194 -14 0.167624137 1.915432758 0.700699027 0.211847727 0.1370217 205.1613452 1.922906145 62.59057482 0.509771403 1.00E-14 14 -1.214733731 CPVPVCRGRSFTALRSSPLT(ph)VT(ph)MDWQSIK ddPTM_HeLa_A485_30min_R1 1 CPVPVCRGRSFTALRSSPLTVTMDWQSIK 29 3 A0A494C100;Q9UJA3-2;Q9UJA3-3;Q9UJA3;Q9UJA3-4 A0A494C100 MCM8 DNA helicase MCM8 2 0 CPVPVCRGRS(0.019)FT(0.045)ALRS(0.134)S(0.139)PLT(0.572)VT(0.608)MDWQS(0.483)IK 43.416 0.036644 579530000 222500 88835 73557 787880 301000 163020 446690 303260 144600 998310 TRUE FALSE FALSE 271994.3574 99223.48049 100768.7953 830919.8894 271031.3831 171555.4751 351251.0324 228885.0095 173619.8937 749449.6895 0.362925439 0.132395119 0.134457051 1.108706696 0.36164053 0.228908595 0.468678601 0.305404102 0.231663174 1 19.51547211 -11.10131604 2.708924718 2.176121497 0.374839077 0.333964057 0.266620054 37904629.57 14884357.8 274274175.3 0.068425484 7.92E-12 11.10131604 -1.80128242 CQEVISWLDANTLAEKDEFEHK ddPTM_HeLa_A485_30min_R1 1 CQEVISWLDANTLAEKDEFEHK 22 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 143.95 7.05E-09 29793000 43224 25566 19576 72751 57513 38373 77543 66116 30175 105810 FALSE FALSE TRUE 52839.02968 28555.72131 26817.97703 76725.20291 51786.80378 40382.15094 60975.30458 49900.94733 36230.84572 79433.51429 0.665198187 0.359492106 0.337615392 0.965904676 0.651951563 0.508376739 0.767626928 0.628210243 0.456115357 1 16.27746021 -14 0.31748709 4.713954105 0.578373619 0.303673278 0.181660758 423.8248533 3.788106005 1057.389399 0.173186388 1.00E-14 14 -4.135580487 CQLEINFNTLQTK ddPTM_HeLa_A485_30min_R1 2 CQLEINFNTLQTK 13 0 K7EJH8;O43707;O43707-2;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;F6THM6;P12814-2;P12814;P12814-3;P12814-4;H9KV75 K7EJH8;O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 ; ; 179.67 2.37E-09 79340000 27034.1 26131.3 21486.5 35454 47844 26286.9 40231 40494 26643 53038 FALSE FALSE TRUE 33047.74228 29187.12822 29435.25048 37390.76225 43080.48337 27663.24144 31635.31819 30562.78301 31990.00572 39816.60269 0.829999047 0.733039141 0.739270769 0.93907465 1.081972857 0.694766494 0.794525802 0.767588919 0.803433833 1 15.28108251 -5.236259866 24.2282694 0.857622585 0.763996588 0.142104492 0.111673931 1217.099061 1171115.483 0.03218341 0.055709101 5.80E-06 5.236259866 -0.093625997 CQLEINFNTLQTK ddPTM_HeLa_A486_30min_R1 1 CQLEINFNTLQTK 13 0 K7EJH8;O43707;O43707-2;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;F6THM6;P12814-2;P12814;P12814-3;P12814-4;H9KV75 K7EJH8;O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 257.19 2.51E-39 33958000 50774 44970 32551 24475 54862 50922 65154 65065 41140 63705 FALSE FALSE TRUE 47215.0048 41406.41342 45155.61895 56979.0369 47980.69639 44639.76138 48851.78007 50251.11986 44706.04832 47752.85335 0.988736829 0.867098205 0.945610907 1.193206958 1.004771297 0.934808252 1.023012797 1.052316591 0.936196378 1 15.54329932 -5.020922014 24.99304582 1.022563985 0.922526737 0.229795775 0.073107241 998.4185062 1192694.129 0.019987538 0.035133316 9.53E-06 5.020922014 -0.100037248 CQTAEADS(ph)ES(ph)DHEVPEPESEMK ddPTM_HeLa_A485_30min_R1 2 CQTAEADSESDHEVPEPESEMK 22 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 0 CQTAEADS(1)ES(1)DHEVPEPESEMK;CQT(0.001)AEADS(1)ES(1)DHEVPEPESEMK ; 183.47 1.61E-19 2161600000 1633230 1530590 1061570 2478370 2250070 1632560 2825900 2481390 1345830 3296900 TRUE FALSE FALSE 1996536.379 1709579.186 1454288.919 2613757.078 2026045.13 1718038.317 2222123.38 1872825.212 1615925.736 2475043.505 0.806667186 0.690726924 0.587581154 1.056044903 0.818589704 0.694144694 0.897811847 0.756683754 0.652887811 1 21.23902245 -11.39411057 2.318819503 2.837311986 0.776029325 0.222682761 0.126894511 6724515.637 851845.088 65040924.83 0.031978081 4.04E-12 11.39411057 -2.06128266 CQTAEADS(ph)ES(ph)DHEVPEPESEMK ddPTM_HeLa_A486_30min_R1 2 CQTAEADSESDHEVPEPESEMK 22 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 0 CQTAEADS(1)ES(1)DHEVPEPESEMK;CQTAEADS(1)ES(1)DHEVPEPESEMK ; 169.91 4.90E-14 2533900000 2020460 1913130 1054750 1088160 1975660 2361220 3011890 2821520 1673000 3215280 TRUE FALSE FALSE 1878836.188 1761526.611 1463177.447 2533291.473 1727854.301 2069916.684 2258283.265 2179121.489 1818016.987 2410152.96 0.779550601 0.730877517 0.60708904 1.051091576 0.716906491 0.858832082 0.936987529 0.904142403 0.754316019 1 21.20069328 -1.000000001 0.104320856 1.050730671 0.069360004 0.243794986 0.115357598 170.3386112 1.25394935 1.267688845 23.9758367 0.1 1.000000001 -0.981370667 CQYVTEK ddPTM_HeLa_A485_30min_R1 2 CQYVTEK 7 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;P09972 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 0 ; ; 105.14 0.025707 61138000 33344 39219 36245 34994 69733 30813 57732 50147 39641 71102 FALSE FALSE TRUE 40761.25776 43805.32089 49653.53378 36905.63361 62790.13767 32426.32103 45397.08657 37848.36962 47596.58509 53377.57994 0.763640049 0.82066892 0.930232016 0.691407022 1.176339162 0.607489532 0.850489787 0.70906867 0.891696198 1 15.70394628 -11.52353455 1.17994574 1.718588861 0.826721327 0.108480229 0.148983353 74389.5699 5401.170166 140563.0015 0.040900498 3.00E-12 11.52353455 -0.891867535 CRDDSFFGETSHNYHKFDSEYER ddPTM_HeLa_A485_30min_R1 2 CRDDSFFGETSHNYHKFDSEYER 23 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;H0Y8T4 D6REM6 MATR3 Matrin-3 0 0 ; ; 279.44 2.17E-75 415010000 324695 384062 275983 158013 392055 256871 412838 516320 217389 281997 FALSE FALSE TRUE 396922.2826 428974.71 378080.5963 166644.8501 353020.6276 270320.3684 324631.7887 389691.7104 261016.9783 211700.3377 1.874925127 2.026329834 1.785923445 0.787173284 1.667548722 1.276900979 1.533449556 1.840770377 1.232954945 1 17.69166404 -5.017163767 24.5254606 1.38108305 1.939502431 0.436246017 0.293095332 526.7755948 752717.5191 0.077436019 0.138413175 9.61E-06 5.017163767 0.558419381 CRDDSFFGETSHNYHKFDSEYER ddPTM_HeLa_A486_30min_R1 1 CRDDSFFGETSHNYHKFDSEYER 23 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;H0Y8T4 D6REM6 MATR3 Matrin-3 0 0 248.79 1.01E-49 260610000 553250 114010 184710 56449 437730 222940 201090 250090 112280 260580 FALSE FALSE TRUE 514470.032 104975.4324 256234.6587 131416.1248 382825.8217 195435.9295 150775.1551 193149.9664 122012.5208 195329.0719 2.633863085 0.537428614 1.311810148 0.672793474 1.959901913 1.000547064 0.771903299 0.988843927 0.624651106 1 17.57554716 -4.250938857 24.76492284 1.009669955 2.633864127 0.613722226 0.391932438 901.3501385 2125740.445 0.095922888 1.321896218 5.61E-05 4.250938857 1.624194171 CRS(ph)PGMLEPLGSSR ddPTM_HeLa_A485_30min_R1 6 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR ;;;;; 173.18 1.20E-12 5396830000 750109 1100398 1101350 885369 1634730 941242 1384980 1391440 915487 1284910 TRUE FALSE FALSE 916968.1592 1229079.974 1508785.196 933734.4666 1471970.541 990523.9757 1089067.709 1050187.158 1099216.844 964605.584 0.950614608 1.274178788 1.564147275 0.967996124 1.525981775 1.026869419 1.129029032 1.088721832 1.13955057 1 19.87957964 CRS(ph)PGMLEPLGSSR ddPTM_HeLa_A486_30min_R1 6 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR;CRS(1)PGMLEPLGSSR ;;;;; 202.61 3.53E-22 8455130000 1217068 1220831 1222504 535158 1903590 1330181 1762340 1750100 1252562 1334103 TRUE FALSE FALSE 1131757.818 1124087.905 1695890.289 1245874.869 1664823.992 1166076.793 1321383.892 1351640.434 1361135.083 1000034.925 1.131718293 1.124048648 1.695831061 1.245831358 1.66476585 1.166036068 1.321337744 1.35159323 1.361087546 1 19.93161895 CRSPGMLEPLGSS(ph)R ddPTM_HeLa_A485_30min_R1 1 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 CRS(0.102)PGMLEPLGS(0.048)S(0.85)R 103.32 0.0062212 160750000 196950 307730 261130 226140 422530 260200 333700 387740 238800 365330 TRUE FALSE FALSE 240760.848 343716.3466 357732.8535 238493.4556 380461.4296 273823.6697 262402.2689 292646.157 286724.9696 274259.9544 0.87785637 1.253250214 1.304356862 0.869589059 1.387229245 0.998409229 0.956764795 1.067039327 1.045449636 1 18.06518446 CS(ph)LVFY(ph)ILSPLNLNSIPDIEALQLHADVENQSGK ddPTM_HeLa_A485_30min_R1 1 CSLVFYILSPLNLNSIPDIEALQLHADVENQSGK 34 0 Q5T370 Q5T370 ARRDC1 2 0 CS(0.536)LVFY(0.69)ILS(0.561)PLNLNS(0.213)IPDIEALQLHADVENQSGK 45.179 0.027195 217290000 72504 94747 105310 34692 143680 106830 106670 108780 125310 38048 TRUE FALSE FALSE 88632.26466 105826.8375 144268.5513 36587.13612 129374.7147 112423.4536 83879.08309 82101.53444 150458.5676 28563.33382 3.103008396 3.704988995 5.050830278 1.280912667 4.529398267 3.935935991 2.936599894 2.874368061 5.267542246 1 14.80187676 -10.35959067 5.084586837 0.998560691 3.598934957 0.332975372 1.116498314 0.017412307 0.002193098 1.032300688 0.250303302 4.37E-11 10.35959067 2.600374266 CS(ph)PPSFTYK ddPTM_HeLa_A486_30min_R1 1 CSPPSFTYK 9 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 CS(0.995)PPS(0.004)FT(0.001)YK 64.439 0.022721 99410000 377390 350320 216790 211060 358800 434310 539330 523950 279490 559880 TRUE FALSE FALSE 350936.9098 322559.3674 300736.8938 491358.3464 313795.9583 380729.2479 404383.9295 404658.0227 303716.4182 419682.4038 0.836196387 0.768579679 0.71658209 1.170786151 0.74769863 0.907184205 0.963547497 0.964200593 0.723681564 1 18.67893845 CS(ph)PTVAFVEFPSS(ph)PQLK ddPTM_HeLa_A486_30min_R1 1 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 CS(1)PTVAFVEFPS(0.405)S(0.595)PQLK 120.9 3.17E-06 0 20921 18281 11856 11577 21945 19239 28861 26745 17816 21878 TRUE FALSE FALSE 19454.54594 16832.34698 16446.96071 26951.84107 19192.45347 16865.48779 21639.67254 20655.74734 19360.30522 16399.6064 1.186281272 1.026387254 1.002887528 1.643444386 1.17029964 1.028408084 1.319523897 1.259527018 1.180534749 1 14.00137357 CS(ph)VSLSNVEAR ddPTM_HeLa_A486_30min_R1 1 CSVSLSNVEAR 11 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 CS(0.83)VS(0.166)LS(0.003)NVEAR 122.1 0.000282 0 164180 191820 147600 87776 233580 214070 266600 274540 166170 201220 TRUE FALSE FALSE 152671.8298 176619.4846 204754.6729 204346.964 204282.2184 187660.2199 199893.8602 212033.2352 180573.7494 150833.2023 1.012189806 1.170958926 1.357490723 1.354787678 1.354358426 1.244157235 1.325264313 1.405746427 1.197175069 1 17.20259451 -4.462120114 3.109931508 1.299627755 1.014814406 0.340725663 0.112175468 0.263835614 4.551836909 0.02697715 0.141538627 3.45E-05 4.462120114 -0.284813349 CSATPSAQVKPIVSAS(ph)PPSR ddPTM_HeLa_A485_30min_R1 4 CSATPSAQVKPIVSASPPSR 20 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 CSATPSAQVKPIVSAS(0.999)PPSR;CSATPSAQVKPIVS(0.001)AS(0.999)PPSR;CSATPSAQVKPIVSAS(0.999)PPSR;CSATPSAQVKPIVSAS(1)PPSR ;;; 240.95 1.67E-46 1701830000 1255630 1329070 1002010 1712780 1992220 1287340 2183920 2075920 1162790 2529610 TRUE FALSE FALSE 1534940.562 1484493.175 1372695.196 1806344.834 1793867.582 1354743.132 1717307.651 1566797.365 1396151.287 1899024.781 0.808278321 0.78171343 0.722842171 0.951196031 0.944625683 0.713388864 0.90431029 0.82505367 0.735193822 1 20.8568273 -11.60346737 2.274990162 5.162788604 0.823615795 0.293181173 0.083395788 4584741.895 506029.0183 101434844.3 0.022553491 2.49E-12 11.60346737 -4.339172809 CSATPSAQVKPIVSAS(ph)PPSR ddPTM_HeLa_A486_30min_R1 3 CSATPSAQVKPIVSASPPSR 20 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 CSATPSAQVKPIVSAS(0.985)PPS(0.015)R;CSATPSAQVKPIVSAS(1)PPSR;CSATPSAQVKPIVSAS(0.999)PPSR ;; 220.53 1.18E-35 1361480000 1664940 1290290 790760 685230 1490040 1489890 2037690 1938200 1267010 2088350 TRUE FALSE FALSE 1548236.304 1188042.721 1096963.449 1595250.07 1303145.289 1306082.52 1527838.41 1496914.171 1376835.447 1565413.567 0.989027013 0.758932174 0.700749931 1.019059821 0.83246071 0.834337039 0.975996658 0.956241981 0.879534633 1 20.57811242 -6.793049139 0.574502874 0.973473695 0.834119208 0.159916217 0.095974248 1.515412016 1.033509071 0.090425105 0.068635278 1.61E-07 6.793049139 -0.139354487 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(ph)ISPLDLAK ddPTM_HeLa_A486_30min_R1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 CSDAAGYPHATHDLEGPPLDAY(0.013)S(0.014)IQGQHT(0.487)IS(0.487)PLDLAK 54.326 0.0060906 2413500000 16151 17224 7604.2 5332.3 14003 17538 21666 18404 12335 23020 TRUE FALSE FALSE 15018.8983 15859.10751 10548.74989 12413.86388 12246.61317 15374.33987 16244.93764 14213.81096 13404.20773 17255.64216 0.870376087 0.919067941 0.61132178 0.719408977 0.709716454 0.890974658 0.941427591 0.823719617 0.776801443 1 14.07478054 -6.275101702 23.93390591 0.878994834 0.763304023 0.27335399 0.097880688 708.3931898 1240971.519 0.036678083 0.032544395 5.31E-07 6.275101702 -0.115690811 CSDAAGYPHATHDLEGPPLDAYSIQGQHTIS(ph)PLDLAK ddPTM_HeLa_A485_30min_R1 5 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.002)IS(0.998)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.008)IS(0.992)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.011)IS(0.989)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.015)IS(0.985)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.016)IS(0.984)PLDLAK ;;;; 386.12 5.11E-195 5539850000 814000 826600 617383 761110 1535610 763955 1382910 1370310 751266 1463770 TRUE FALSE FALSE 995071.4917 923263.6795 845778.6632 802687.5121 1382719.277 803954.5025 1087439.981 1034239.324 902038.1952 1098879.078 0.905533204 0.840186785 0.769674007 0.730460274 1.258299757 0.731613258 0.989590214 0.941176645 0.820871207 1 20.06760121 CSDAAGYPHATHDLEGPPLDAYSIQGQHTIS(ph)PLDLAK ddPTM_HeLa_A486_30min_R1 5 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.007)IS(0.993)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.028)IS(0.972)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.004)IS(0.996)PLDLAK;CSDAAGYPHATHDLEGPPLDAYSIQGQHT(0.003)IS(0.997)PLDLAK;CSDAAGYPHATHDLEGPPLDAYS(0.003)IQGQHT(0.252)IS(0.745)PLDLAK ;;;; 348.95 5.88E-150 5432870000 1474140 1200800 769880 77662 1449600 1387520 1820400 1722170 1216230 1156500 TRUE FALSE FALSE 1370810.398 1105644.235 1067998.154 180801.0608 1267777.651 1216341.89 1364916.666 1330069.486 1321653.796 866904.8724 1.581269689 1.275392802 1.231966953 0.208559286 1.462418417 1.403085769 1.574471097 1.534273861 1.524566118 1 19.72551417 CSDVSELS(ph)SSPPGPYHQEPYVCKPEER ddPTM_HeLa_A486_30min_R1 1 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 CSDVS(0.01)ELS(0.34)S(0.322)S(0.322)PPGPY(0.005)HQEPY(0.001)VCKPEER 42.355 0.032665 695980000 116650 154830 87341 57811 178880 201220 232220 220150 154440 201400 TRUE FALSE FALSE 108473.4374 142560.7069 121161.7743 134586.9296 156443.2024 176395.5223 174116.0998 170026.6508 167826.9835 150968.1291 0.71851879 0.944309953 0.80256525 0.891492333 1.036266418 1.168428882 1.153330182 1.126242021 1.111671613 1 17.20388449 -5.803665105 2.469091012 1.122013355 0.834497009 0.787342267 0.067533616 0.119407881 1.490227819 0.021282055 0.02626066 1.57E-06 5.803665105 -0.287516345 CSDVSELSS(ph)SPPGPYHQEPYVCKPEER ddPTM_HeLa_A486_30min_R1 1 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 CSDVSELS(0.091)S(0.519)S(0.391)PPGPYHQEPYVCKPEER 216.76 2.16E-38 619840000 144530 188080 123820 66424 211940 250290 289000 253870 161290 244750 TRUE FALSE FALSE 134399.1934 173175.8558 171766.42 154638.4289 185356.5089 219411.7646 216689.1433 196069.3429 175270.7471 183463.0069 0.732568356 0.943927927 0.936245529 0.842886157 1.010320893 1.195945538 1.181105373 1.068713231 0.95534653 1 17.48512967 -5.928735212 4.436311989 1.092304091 0.876038435 0.572259294 0.087663324 0.161386986 6.164117448 0.029003847 0.032887782 1.18E-06 5.928735212 -0.216265656 CSDVSELSSS(ph)PPGPYHQEPYVCKPEER ddPTM_HeLa_A485_30min_R1 4 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 CSDVSELS(0.001)S(0.184)S(0.815)PPGPYHQEPYVCKPEER;CSDVSELS(0.034)S(0.232)S(0.733)PPGPYHQEPYVCKPEER;CSDVSELS(0.002)S(0.155)S(0.843)PPGPYHQEPYVCKPEER;CSDVSELS(0.003)S(0.205)S(0.792)PPGPYHQEPYVCKPEER ;;; 170.36 3.50E-14 4799850000 730887 620725 534334 1139459 1076336 728516 1292560 1177345 609842 1609930 TRUE FALSE FALSE 893470.2916 693313.3892 732006.3821 1201704.76 969172.2086 766659.9713 1016393.997 888599.2927 732231.6956 1208604.08 0.739258047 0.573648063 0.605662677 0.994291497 0.801893875 0.634335085 0.840965221 0.735227779 0.605849101 1 20.20491029 -11.41161281 2.316476813 3.436742224 0.728806419 0.308181599 0.123221756 3732810.636 606761.3801 47868840.92 0.032012705 3.88E-12 11.41161281 -2.707935805 CSDVSELSSS(ph)PPGPYHQEPYVCKPEER ddPTM_HeLa_A486_30min_R1 5 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 CSDVSELS(0.001)S(0.215)S(0.783)PPGPYHQEPYVCKPEER;CSDVSELS(0.004)S(0.185)S(0.811)PPGPYHQEPYVCKPEER;CSDVSELS(0.001)S(0.209)S(0.79)PPGPYHQEPYVCKPEER;CSDVSELS(0.037)S(0.202)S(0.761)PPGPYHQEPYVCKPEER;CSDVSELS(0.001)S(0.212)S(0.787)PPGPYHQEPYVCKPEER ;;;; 168.69 4.22E-14 6309330000 838803 1132982 657952 471622 1273270 1475580 1787740 1619890 1128580 1635920 TRUE FALSE FALSE 780007.2413 1043200.38 912728.635 1097959.85 1113564.604 1293537.942 1340428.543 1251076.409 1226406.223 1226274.984 0.636078573 0.850706729 0.74430992 0.89536186 0.90808719 1.054851448 1.093089691 1.020225011 1.000107023 1 20.2258511 -5.573425413 1.045007704 1.040588883 0.724154972 0.820279606 0.058132407 0.218371768 0.493404636 0.024071638 0.04619949 2.67E-06 5.573425413 -0.316433911 CSGPGLS(ph)PGMVR ddPTM_HeLa_A485_30min_R1 16 CSGPGLSPGMVR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CS(0.001)GPGLS(0.999)PGMVR;CSGPGLS(1)PGMVR;CS(0.009)GPGLS(0.991)PGMVR;CSGPGLS(1)PGMVR;CS(0.083)GPGLS(0.917)PGMVR ;;;;;;;;;;;;;;; 282.54 5.51E-41 61018020000 14692430 19358000 15628960 23071880 27123710 15959680 25630300 24905770 14588700 31779140 TRUE FALSE FALSE 17960710.37 21621749.71 21410762.68 24332238.38 24423178.2 16795304.17 20154177.02 18797590.86 17516518.27 23857185.25 0.752842809 0.906299276 0.897455524 1.019912371 1.023724213 0.703993534 0.844784362 0.78792157 0.734224012 1 24.5079205 -6.261813304 24.99971738 0.802842277 0.923576094 0.206771881 0.102358898 50.83158911 3398392.233 0.03497894 0.03279309 5.47E-07 6.261813304 0.120733818 CSGPGLS(ph)PGMVR ddPTM_HeLa_A486_30min_R1 11 CSGPGLSPGMVR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR ;;;;;;;;;; 290.86 1.24E-49 57819830000 14310468 13668756 9715816 6323463 16815855 14576541 19155020 18767708 12203855 17612249 TRUE FALSE FALSE 13307378.09 12585593.99 13478040.15 14721341.43 14706653.66 12778235.57 14362231.39 14494710.58 13261694.98 13202027.21 1.007979902 0.953307684 1.02090686 1.115081888 1.113969349 0.967899503 1.08788076 1.097915521 1.004519591 1 23.65425614 -5.00049633 12.17581118 1.060212149 0.982230165 0.261383463 0.049835711 0.092719784 856.6303226 0.013096639 0.025906094 9.99E-06 5.00049633 -0.077981984 CSK(ac)LPSSTK ddPTM_HeLa_A485_30min_R1 1 CSKLPSSTK 9 1 D6R9B8;C9J929;B5MBX1;A0A0C4DFT8;G3XAA4;Q9NQC1-3;Q9NQC1-2;Q9NQC1 D6R9B8 JADE2 Protein Jade-2 0 1 CSK(1)LPSSTK 119.53 0.0095524 23752000 27763 27898 21073 40367 50162 41731 85220 116480 82379 152670 FALSE TRUE FALSE 33938.78357 31160.42842 28868.77962 42572.147 45167.69515 43915.97063 67012.05082 87913.09737 98911.70968 114612.1787 0.296118475 0.271877114 0.251882304 0.371445229 0.394091585 0.383170193 0.584685254 0.767048479 0.86301221 1 16.80640083 -7.203300787 0.806640375 1.003410131 0.285914174 0.982779872 0.033545135 0.076063862 0.09156297 0.032317411 0.014832894 6.26E-08 7.203300787 -0.717495958 down CSK(ac)LPSSTK(ac)SGWPR ddPTM_HeLa_A485_30min_R1 2 CSKLPSSTKSGWPR 14 2 D6R9B8;C9J929;B5MBX1;A0A0C4DFT8;G3XAA4;Q9NQC1-3;Q9NQC1-2;Q9NQC1 D6R9B8 JADE2 Protein Jade-2 0 2 ; CSK(1)LPSSTK(1)SGWPR;CSK(1)LPSSTK(1)SGWPR 247.67 1.60E-39 257780000 211070 265530 209620 284370 368570 195019 352950 289850 180016 352790 FALSE TRUE FALSE 258021.7933 296581.4237 287167.161 299904.413 331873.8767 205229.8933 277539.3492 218763.833 216143.56 264845.9456 0.974233503 1.11982618 1.084279997 1.132373057 1.253082715 0.774902907 1.047927498 0.826004085 0.816110511 1 18.0147939 -6.265154718 24.99997885 0.891797913 1.112659199 0.547147397 0.099965916 252.8358699 1701289.163 0.034057885 0.031211897 5.43E-07 6.265154718 0.220861286 CSK(ac)LPSSTK(ac)SGWPR ddPTM_HeLa_A486_30min_R1 2 CSKLPSSTKSGWPR 14 2 D6R9B8;C9J929;B5MBX1;A0A0C4DFT8;G3XAA4;Q9NQC1-3;Q9NQC1-2;Q9NQC1 D6R9B8 JADE2 Protein Jade-2 0 2 ; CSK(1)LPSSTK(1)SGWPR;CSK(1)LPSSTK(1)SGWPR 279.56 1.21E-64 299080000 255050 250950 184928 99097 287660 230710 314010 276830 219740 274470 FALSE TRUE FALSE 237172.3121 231063.8081 256537.0741 230702.8241 251579.0005 202247.3459 235441.3767 213801.8522 238787.2401 205740.9255 1.152771679 1.123081407 1.24689375 1.121326851 1.222795124 0.98301952 1.144358499 1.039179986 1.160621007 1 17.65046927 -6.247055762 24.99893164 1.072817215 1.17177269 0.413853752 0.063912621 842.0340206 1463468.204 0.019752535 0.019671415 5.66E-07 6.247055762 0.098955475 CSKQSPSGAHGT(ph)HFGDDR ddPTM_HeLa_A485_30min_R1 1 CSKQSPSGAHGTHFGDDR 18 1 A0A0A0MRP9;Q96C92-3;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 1 0 CS(0.001)KQS(0.001)PS(0.001)GAHGT(0.998)HFGDDR 73.464 0.0061315 152280000 20845 66652 92996 13515 54694 39598 31841 35632 55177 18842 TRUE FALSE FALSE 25481.89834 74446.3716 127399.0903 14253.29023 49248.47332 41671.29005 25037.91023 26893.19613 66250.51779 14145.03616 1.801472831 5.263073969 9.006628815 1.007653149 3.481678856 2.946000956 1.770084569 1.901246192 4.683658425 1 13.78800824 -5.296275519 24.99691659 2.477915769 5.347664646 0.329910335 1.929821096 700.4072553 502580.6347 0.543061557 0.805528252 5.06E-06 5.296275519 2.869748877 CSLHSAS(ph)PASVR ddPTM_HeLa_A485_30min_R1 2 CSLHSASPASVR 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 CSLHS(0.016)AS(0.965)PAS(0.019)VR;CSLHS(0.001)AS(0.999)PASVR ; 142.95 1.64E-07 740385000 528744 878720 709914 413463 1086332 669748 919697 891061 674938 956534 TRUE FALSE FALSE 646361.2787 981478.6602 972540.7306 436049.4367 978172.9717 704814.9697 723196.2227 672526.8926 810391.8657 718087.6775 0.900114706 1.366795018 1.354348168 0.607237041 1.362191557 0.981516592 1.007114097 0.936552616 1.128541669 1 19.45380048 CSLHSAS(ph)PASVR ddPTM_HeLa_A486_30min_R1 2 CSLHSASPASVR 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 CSLHS(0.001)AS(0.999)PASVR;CSLHS(0.005)AS(0.993)PAS(0.002)VR ; 194.55 8.71E-14 628700000 993990 869360 764200 103558 1261860 824120 990720 921410 1001710 605810 TRUE FALSE FALSE 924316.434 800468.7474 1060118.706 241088.2575 1103585.752 722448.4534 742831.3772 711625.0572 1088539.029 454111.2328 2.035440586 1.762715145 2.334491264 0.53090133 2.430210205 1.590906371 1.635791682 1.567072131 2.397075762 1 18.7926862 -10.4644635 3.101781816 0.98291669 1.785467693 0.170868113 0.532548474 279108036.4 352502217 41614114.28 0.126878099 3.43E-11 10.4644635 0.802551003 CSPTVAFVEFPS(ph)SPQLK ddPTM_HeLa_A486_30min_R1 1 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 CSPTVAFVEFPS(0.529)S(0.471)PQLK 199.84 5.18E-25 356280000 338070 308920 142090 176850 302920 369620 458690 387530 285520 503220 TRUE FALSE FALSE 314373.0388 284440.0541 197111.0533 411715.7375 264924.949 324020.0424 343920.9105 299297.8787 310269.1035 377210.4366 0.833415538 0.754061994 0.52254931 1.091474937 0.702326668 0.858990131 0.911748131 0.793450683 0.82253584 1 18.52501007 -13.99999927 0.079496747 1.617298734 0.61990869 0.169382823 0.136031092 461.0339524 2.592291802 50.26242829 4.750658692 1.00E-14 13.99999927 -0.997390044 CSPTVAFVEFPSS(ph)PQLK ddPTM_HeLa_A485_30min_R1 2 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 CSPTVAFVEFPS(0.002)S(0.998)PQLK;CSPTVAFVEFPS(0.26)S(0.74)PQLK ; 334.96 1.19E-91 275845000 304969 225788 169182 524420 377986 197688 406201 299117 220324 654490 TRUE FALSE FALSE 372808.3019 252191.9425 231769.4621 553067.7367 340352.3867 208038.638 319412.838 225758.0868 264541.0059 491337.688 0.758761868 0.513276202 0.471711142 1.125636706 0.692705638 0.423412743 0.65008821 0.45947643 0.538409758 1 18.90635538 -10.06500819 4.511876638 1.000017819 0.624610093 0.246317535 0.196281386 137777799 33917.94164 32481.80302 0.049413453 8.61E-11 10.06500819 -0.375407725 CSPTVAFVEFPSS(ph)PQLK ddPTM_HeLa_A486_30min_R1 3 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 CSPTVAFVEFPS(0.03)S(0.97)PQLK;CSPTVAFVEFPS(0.186)S(0.814)PQLK;CSPTVAFVEFPS(0.017)S(0.983)PQLK ;; 237.59 2.90E-42 384799000 446358 373084 206357 212165 328138 518668 605440 562750 378252 687840 TRUE FALSE FALSE 415070.6092 343519.4651 286263.9568 493930.8422 286979.8723 454680.0156 453952.5083 434624.1097 411039.1879 515600.3869 0.805023851 0.666251372 0.555205085 0.95797221 0.556593594 0.881845761 0.88043477 0.842947602 0.797204964 1 18.97589382 -6.312610569 24.99347972 0.870667699 0.711253596 0.339899207 0.119612448 439.9475586 214881.7454 0.040493745 0.035712165 4.87E-07 6.312610569 -0.159414103 CSSSSGGGS(ph)S(ph)GDEDGLELDGAPGGGKR ddPTM_HeLa_A485_30min_R1 1 CSSSSGGGSSGDEDGLELDGAPGGGKR 27 1 Q9P258 Q9P258 RCC2 Protein RCC2 2 0 CSSSS(0.003)GGGS(0.999)S(0.998)GDEDGLELDGAPGGGKR 116.19 9.35E-05 146620000 136080 127700 92628 151200 194780 173640 252930 270100 118710 262130 TRUE FALSE FALSE 166350.5265 142633.4042 126894.9518 159459.6731 175387.0193 182731.5219 198889.4393 203857.5515 142534.0081 196785.8151 0.845337996 0.724815475 0.6448379 0.810320973 0.891258443 0.928580761 1.010689917 1.03593621 0.724310378 1 17.58626671 -5.744163032 2.388522453 0.943934264 0.736198201 0.475263932 0.092930587 0.246272827 2.879925469 0.030659321 0.039444333 1.80E-06 5.744163032 -0.207736063 CSSSSGGGS(ph)S(ph)GDEDGLELDGAPGGGKR ddPTM_HeLa_A486_30min_R1 2 CSSSSGGGSSGDEDGLELDGAPGGGKR 27 1 Q9P258 Q9P258 RCC2 Protein RCC2 2 0 CS(0.059)S(0.064)S(0.068)S(0.27)GGGS(0.656)S(0.882)GDEDGLELDGAPGGGKR;CSSSSGGGS(1)S(1)GDEDGLELDGAPGGGKR ; 112.57 0.00014124 267350000 442290 358470 203275 206054 400650 442910 564910 548850 332300 586890 TRUE FALSE FALSE 411287.755 330063.5317 281988.5239 479704.1254 350396.7411 388268.2674 423563.543 423888.8363 361104.0316 439928.924 0.934895917 0.750265585 0.640986552 1.09041279 0.796484891 0.882570448 0.962799943 0.963539366 0.820823574 1 18.74691093 -5.253099253 24.9979634 0.923136988 0.77287099 0.315274943 0.104597163 781.9681801 2343797.596 0.028023606 0.047504173 5.58E-06 5.253099253 -0.150265998 CSVCPDYDLCS(ph)VCEGK ddPTM_HeLa_A486_30min_R1 2 CSVCPDYDLCSVCEGK 16 0 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 1 0 CSVCPDYDLCS(1)VCEGK;CSVCPDYDLCS(1)VCEGK ; 263.45 2.38E-55 50338000 129480 303762 172232 185615 326320 391740 502250 462450 237589 356090 TRUE FALSE FALSE 120404.1206 279690.7928 238924.8429 432121.1005 285389.9028 343411.1017 376581.7377 357160.2302 258183.4058 266922.7462 0.451082279 1.04783424 0.89510859 1.6188995 1.069185398 1.286556154 1.410826702 1.338065921 0.967258915 1 18.02606273 -4.15236962 1.263312679 1.246497429 2.76E-11 0.536166446 0.210024594 1.318783801 1.535738882 0.059907619 2.274202428 7.04E-05 4.15236962 -1.246497429 CSVS(ph)LSNVEAR ddPTM_HeLa_A485_30min_R1 2 CSVSLSNVEAR 11 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 CSVS(0.997)LS(0.003)NVEAR;CS(0.015)VS(0.938)LS(0.047)NVEAR ; 162.88 6.64E-08 297780000 135565 151093 175145 190195 268660 167186 309640 337190 224203 416470 TRUE FALSE FALSE 165720.9666 168762.012 239938.4239 200584.8713 241911.2671 175939.6004 243482.8845 254493.6238 269198.4856 312651.6936 0.530049797 0.539776421 0.767430431 0.641560162 0.773740466 0.56273356 0.778767202 0.813984472 0.861017199 1 18.25419681 -5.795790298 0.085213969 1.364539473 8.05E-11 0.720126465 0.077513465 23.62883275 0.617334944 3.425106388 6.390969916 1.60E-06 5.795790298 -1.364539472 CSVS(ph)LSNVEAR ddPTM_HeLa_A486_30min_R1 2 CSVSLSNVEAR 11 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 CS(0.036)VS(0.945)LS(0.02)NVEAR;CS(0.131)VS(0.803)LS(0.066)NVEAR ; 162.32 6.87E-08 106240000 175918 183773 147140 64096 234990 247250 266230 257620 150377 234280 TRUE FALSE FALSE 163587.0566 169210.1582 204116.5485 149218.7272 205515.363 216746.8089 199616.4381 198965.5498 163411.7994 175614.7631 0.931510847 0.963530373 1.162297206 0.849693526 1.170262451 1.234217471 1.136672308 1.132965967 0.930512883 1 17.4220546 -4.632474826 6.762878358 1.084526458 0.939779693 0.17411625 0.11270655 0.333258122 18.17234804 0.029411725 0.07922236 2.33E-05 4.632474826 -0.144746764 CSYQPTMEGVHTVHVTFAGVPIPR ddPTM_HeLa_A485_30min_R1 4 CSYQPTMEGVHTVHVTFAGVPIPR 24 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;A0A669KBC6 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 260.01 2.08E-60 188638000 114194 174067 176827 73183 258613 117955 215932 188069 138279 180923 FALSE FALSE TRUE 139596.0613 194422.6215 242242.6657 77180.80198 232864.5817 124130.9414 169796.3642 141944.7829 166030.3269 135822.2257 1.027785111 1.431449237 1.783527433 0.568248691 1.714480678 0.913922156 1.250136811 1.045077726 1.222409116 1 17.05136005 -6.016487883 0.772445959 1.100308719 1.333108738 0.051122275 0.342491788 2.21139061 2.93256072 0.208764366 0.265135852 9.63E-07 6.016487883 0.232800019 CSYQPTMEGVHTVHVTFAGVPIPR ddPTM_HeLa_A486_30min_R1 3 CSYQPTMEGVHTVHVTFAGVPIPR 24 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;A0A669KBC6 Q60FE5 FLNA Filamin-A 0 0 ;; ;; 311.37 1.28E-99 123262000 88862 93551 85561 7833.3 118286 78374 98121 92387 95348 57997.8 FALSE FALSE TRUE 82633.23268 86137.67805 118692.5106 18236.31827 103449.4669 68705.01273 73570.08798 71352.49689 103612.8414 43474.77338 1.900716813 1.981325522 2.730146735 0.419468967 2.379528606 1.580342056 1.692247763 1.641239076 2.383286521 1 15.40789089 -10.92888561 2.676887349 0.458680543 1.839682497 0.156336576 0.595737732 50829890.43 28424563.03 172161536.6 0.144452652 1.18E-11 10.92888561 1.381001954 CT(ph)CPDQFPMIK ddPTM_HeLa_A485_30min_R1 4 CTCPDQFPMIK 11 0 A0A5E8;Q99501;Q99501-2;Q99501-4;Q99501-3 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 CT(1)CPDQFPMIK;CT(1)CPDQFPMIK;CT(1)CPDQFPMIK;CT(1)CPDQFPMIK ;;; 104.07 0.0017357 3254230000 434419 1352120 1776750 82820 818103 877750 383920 509141 1173420 155232 TRUE FALSE FALSE 531054.0078 1510238.672 2434043.762 87344.24689 736649.7928 923707.6327 301892.3557 384273.3714 1408914.631 116535.5192 4.55701413 12.95947092 20.88671143 0.74950751 6.321246927 7.926404231 2.590560866 3.29747852 12.09000174 1 16.83041022 -5.279867249 24.99990946 5.044220547 12.81690748 0.358567942 4.86642181 882.2993739 1196957.039 1.367370249 2.032334349 5.25E-06 5.279867249 7.772686937 CT(ph)CPDQFPMIK ddPTM_HeLa_A486_30min_R1 2 CTCPDQFPMIK 11 0 A0A5E8;Q99501;Q99501-2;Q99501-4;Q99501-3 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 CT(1)CPDQFPMIK;CT(1)CPDQFPMIK ; 84.365 0.0055331 1307290000 126610 335380 533370 9314.6 376040 110074 55227 116690 254880 33203 TRUE FALSE FALSE 117735.2928 308803.2674 739905.1481 21684.85953 328873.5568 96494.18903 41408.62047 90122.23432 276973.2036 24888.75268 4.730461759 12.40734203 29.72849453 0.871271446 13.213742 3.877019883 1.66374832 3.621002445 11.12844855 1 14.60320631 CTEALSKYLEIDLSMK ddPTM_HeLa_A486_30min_R1 1 CTEALSKYLEIDLSMK 16 1 Q15916 Q15916 ZBTB6 Zinc finger and BTB domain-containing protein 6 0 0 63.128 0.025677 70747000 19188 23469 18770 11491 26195 20829 24413 25952 20192 20937 FALSE FALSE TRUE 17843.02029 21609.23097 26038.24668 26751.62872 22909.37884 18259.32975 18304.60919 20043.29613 21942.25882 15694.23892 1.136915296 1.376889384 1.659095851 1.704550877 1.45973175 1.163441556 1.166326655 1.277111699 1.398109136 1 13.93794745 -6.219384556 6.984892569 1.216211921 1.487264314 0.366901998 0.173521269 0.286875563 39.41438726 0.061846184 0.061318309 6.03E-07 6.219384556 0.271052394 CTELNQAWSS(ph)LGK ddPTM_HeLa_A485_30min_R1 1 CTELNQAWSSLGK 13 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 CTELNQAWS(0.071)S(0.929)LGK 153.23 1.15E-06 0 135620 117220 86743 210120 172080 110450 182450 158590 104570 296310 TRUE FALSE FALSE 165788.2011 130927.8593 118832.8454 221598.3235 154947.111 116232.9912 143468.067 119695.5538 125556.2398 222445.3702 0.745298502 0.588584331 0.534211367 0.996192114 0.696562535 0.52252376 0.644958656 0.538089661 0.564436292 1 17.76309155 -11.14038452 2.369212681 1.758372714 0.64746159 0.377063235 0.135778953 13776521.81 3129980.062 56235080.36 0.03524025 7.24E-12 11.14038452 -1.110911124 CTLAEK ddPTM_HeLa_A485_30min_R1 1 CTLAEK 6 0 P23528;E9PP50;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 110.61 0.031099 37792000 55402 67513 48935 73204 69434 60521 77193 89728 58209 101900 FALSE FALSE TRUE 67725.98377 75408.05806 67038.09286 77202.94916 62520.90716 63689.78598 60700.08494 67722.06731 69891.01238 76498.20533 0.885327747 0.985749375 0.876335498 1.009212554 0.817285934 0.832565754 0.793483778 0.88527655 0.913629438 1 16.22313828 -3.875881976 15.84991911 0.894877915 0.000111869 0 0.07304273 131123923.5 79673185.72 0.018726004 4216047530 0.000133082 3.875881976 -0.894766045 CTLPEHES(ph)PSQDISDACEAESTER ddPTM_HeLa_A485_30min_R1 2 CTLPEHESPSQDISDACEAESTER 24 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CTLPEHES(0.888)PS(0.112)QDISDACEAESTER;CTLPEHES(0.973)PS(0.027)QDISDACEAESTER ; 304.79 5.47E-90 5243500000 969370 1001550 1359140 1062760 1817130 836600 1466210 1154990 1142530 1516550 TRUE FALSE FALSE 1185003.012 1118672.56 1861942.445 1120815.888 1636210.157 880403.0824 1152942.256 871726.8915 1371825.291 1138501.995 1.040844037 0.982582872 1.635431868 0.984465458 1.437160553 0.773299552 1.012683562 0.765678844 1.204938856 1 20.11870539 -6.268721363 24.99705581 0.940510309 1.213551921 0.258555207 0.223793394 790.9846611 2715226.16 0.075298094 0.067737181 5.39E-07 6.268721363 0.273041612 CTLPEHES(ph)PSQDISDACEAESTER ddPTM_HeLa_A486_30min_R1 3 CTLPEHESPSQDISDACEAESTER 24 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CTLPEHES(0.998)PS(0.002)QDISDACEAESTER;CTLPEHES(0.999)PS(0.001)QDISDACEAESTER;CTLPEHES(0.998)PS(0.002)QDISDACEAESTER ;; 367.1 3.94E-156 5360000000 1159040 1557639 1381231 536266 2194690 1430644 1804850 1856649 1430221 1330686 TRUE FALSE FALSE 1077797.281 1434206.013 1916080.634 1248454.349 1919411.516 1254145.689 1353257.44 1433930.553 1554193.708 997473.5643 1.080527164 1.43783862 1.920933749 1.251616478 1.924273068 1.257322233 1.356685018 1.437562462 1.558130224 1 19.92791908 CTYRPAMEGPHTVHVAFAGAPITR ddPTM_HeLa_A486_30min_R1 1 CTYRPAMEGPHTVHVAFAGAPITR 24 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 0 0 55.985 0.017001 7100300 10481 11490 9950.3 5110.5 15260 11633 13416 14691 9996.8 14272 FALSE FALSE TRUE 9746.336024 10579.49055 13803.32264 11897.50227 13345.94851 10197.83874 10059.1749 11346.18 10863.33067 10698.1983 0.911025927 0.988903949 1.290247408 1.112103359 1.247494964 0.953229548 0.940268129 1.060569236 1.015435531 1 13.38508023 -6.297900071 24.99475433 0.994334034 1.113365725 0.225888983 0.107326002 972.9192251 666958.4878 0.040267342 0.035513523 5.04E-07 6.297900071 0.119031691 CVACQNPDKPS(ph)PSTSVPAPASFK ddPTM_HeLa_A486_30min_R1 2 CVACQNPDKPSPSTSVPAPASFK 23 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 CVACQNPDKPS(0.95)PS(0.041)T(0.009)SVPAPASFK;CVACQNPDKPS(0.982)PS(0.018)TSVPAPASFK ; 128.89 1.41E-06 693730000 726080 668990 286790 368160 614640 855110 1092290 1014420 579210 1127200 TRUE FALSE FALSE 675185.5415 615976.796 397842.7685 857095.0858 537546.1199 749615.2223 818987.4889 783458.7106 629416.3892 844941.7832 0.799091198 0.729016849 0.470852284 1.014383598 0.636193085 0.887179729 0.969282743 0.927233954 0.744922788 1 19.68849242 -6.059755946 1.116310809 0.908433366 0.705087029 0.244473671 0.145050228 0.710949919 1.869596971 0.069397365 0.075923507 8.71E-07 6.059755946 -0.203346337 CVCAGCRAAPSRR ddPTM_HeLa_A485_30min_R1 1 CVCAGCRAAPSRR 13 2 P12524-2;P12524-3 P12524-2 0 0 62.088 0.035711 1084900000 149210 183720 160450 153750 276820 148980 242830 231340 130030 213470 FALSE FALSE TRUE 182401.2497 205204.4558 219807.1319 162148.9732 249258.8288 156780.3624 190947.3868 174603.5023 156125.8283 160255.8576 1.138187723 1.28048022 1.371601233 1.011813082 1.555380455 0.978312835 1.191515802 1.089529611 0.974228528 1 17.29001757 -7.03454125 0.97970194 0.993458944 1.253895767 0.285212531 0.155232728 0.724290599 1.278924008 0.123210508 0.05701227 9.24E-08 7.03454125 0.260436823 CVPAPGAGASGGTS(ph)PSATQPNPAVFIFEHK ddPTM_HeLa_A485_30min_R1 1 CVPAPGAGASGGTSPSATQPNPAVFIFEHK 30 0 O60343-2;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 CVPAPGAGASGGT(0.02)S(0.872)PS(0.108)ATQPNPAVFIFEHK 191.8 2.96E-21 229870000 91482 95817 65372 121550 156170 95928 158660 158730 78438 165540 TRUE FALSE FALSE 111831.8553 107021.9647 89555.82316 128189.9687 140621.1665 100950.6417 124760.9949 119801.2186 94179.78712 124273.9245 0.8998819 0.861177959 0.720632454 1.031511391 1.131542011 0.8123236 1.003919328 0.964009297 0.757840291 1 16.92316409 -5.271966366 24.79623014 0.958967997 0.830625484 0.230318222 0.108884947 956.003423 2251857.039 0.031181232 0.046807673 5.35E-06 5.271966366 -0.128342513 CVPAPGAGASGGTS(ph)PSATQPNPAVFIFEHK ddPTM_HeLa_A486_30min_R1 2 CVPAPGAGASGGTSPSATQPNPAVFIFEHK 30 0 O60343-2;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 CVPAPGAGASGGT(0.13)S(0.848)PS(0.017)AT(0.005)QPNPAVFIFEHK;CVPAPGAGAS(0.002)GGT(0.039)S(0.958)PS(0.001)ATQPNPAVFIFEHK ; 181.88 8.66E-21 411740000 273560 228690 150883 112762 226190 271130 345080 318090 237560 324580 TRUE FALSE FALSE 254384.8567 210567.7715 209308.9384 262515.6347 197819.1411 237680.7372 258737.3341 245667.8509 258151.8921 243303.0553 1.045547317 0.865454695 0.860280764 1.078965631 0.813056543 0.976891708 1.063436436 1.009719547 1.061030211 1 17.89239491 -6.527038786 15.84530487 1.03233296 0.929228429 0.267950176 0.078495755 1.730524405 6571.156084 0.028626131 0.022498731 2.97E-07 6.527038786 -0.103104531 CVPASGELS(ph)PELQEWAPYSPGHSSR ddPTM_HeLa_A485_30min_R1 1 CVPASGELSPELQEWAPYSPGHSSR 25 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 CVPAS(0.047)GELS(0.953)PELQEWAPYSPGHSSR 70.637 0.0073587 70306000 12594 21816 30864 10331 30789 19572 20380 31624 19798 15734 TRUE FALSE FALSE 15395.49185 24367.19143 42281.87796 10895.35637 27723.53905 20596.75966 16025.64651 23868.16442 23771.277 11811.80336 1.303398929 2.062952682 3.579629347 0.92241261 2.347104689 1.743743866 1.356748501 2.020704518 2.012501925 1 13.52794162 CVWS(ph)PLAS(ph)PSTSILK ddPTM_HeLa_A485_30min_R1 1 CVWSPLASPSTSILK 15 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 2 0 CVWS(0.999)PLAS(0.981)PS(0.016)T(0.003)S(0.002)ILK 65.172 0.0070427 0 41024 42256 29100 51781 46700 34256 45574 56140 32164 60638 TRUE FALSE FALSE 50149.64727 47197.47162 39865.30095 54609.66491 42050.38403 36049.59119 35836.74259 42371.57698 38619.01977 45522.06256 1.101655866 1.036804331 0.875735824 1.199630725 0.923736352 0.791914715 0.787238991 0.930792117 0.848358304 1 15.47427831 -5.988770077 24.99203903 0.861588575 1.042336751 0.446968235 0.095158199 200.8752994 447042.3425 0.028888491 0.032729854 1.03E-06 5.988770077 0.180748176 CVWS(ph)PLAS(ph)PSTSILK ddPTM_HeLa_A486_30min_R1 1 CVWSPLASPSTSILK 15 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 2 0 CVWS(1)PLAS(0.946)PS(0.027)T(0.023)S(0.004)ILK 71.344 0.019155 25850000 58699 63020 37121 25277 54862 55490 60143 63562 48501 65801 TRUE FALSE FALSE 54584.50322 58026.06569 51495.24533 58846.13343 47980.69639 48644.20798 45094.58527 49090.32015 52705.10573 49324.00131 1.10665197 1.17642657 1.04402003 1.19305271 0.972765695 0.986217798 0.914252374 0.995262324 1.068548867 1 15.59000222 -5.775156919 24.99811035 0.985343655 1.127207174 0.640295625 0.051526744 143.9407574 262309.1173 0.015778283 0.017982877 1.68E-06 5.775156919 0.141863519 CVWS(ph)PLAS(ph)PSTSILKR ddPTM_HeLa_A485_30min_R1 1 CVWSPLASPSTSILKR 16 1 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 2 0 CVWS(1)PLAS(0.959)PS(0.018)T(0.016)S(0.007)ILKR 55.536 0.016667 52888000 34491 55958 29677 35635 46815 50203 59979 82775 35851 51855 TRUE FALSE FALSE 42163.40396 62501.80133 40655.75726 37581.64982 42153.93422 52831.55145 47163.99667 62474.30146 43045.96686 38928.50282 1.083098524 1.605553689 1.044369917 0.96540188 1.082855265 1.357143163 1.211554343 1.60484727 1.105769905 1 15.24853924 -6.265677831 24.8970364 1.290896601 1.164397963 0.036068212 0.221365065 1069.854993 6284399.7 0.077642647 0.070807237 5.42E-07 6.265677831 -0.126498638 CWFLAWNPAGTLLASCGGDRR ddPTM_HeLa_A485_30min_R1 1 CWFLAWNPAGTLLASCGGDRR 21 1 O76071 O76071 CIAO1 Probable cytosolic iron-sulfur protein assembly protein CIAO1 0 0 106.94 6.13E-06 10049000 3726.1 2993.7 2917.8 3765.3 4283 5103.4 8512.6 7989.8 2866.5 6347.4 FALSE FALSE TRUE 4554.95809 3343.787173 3997.21564 3970.988805 3856.569481 5370.606133 6693.813468 6030.289022 3441.780257 4765.109995 0.955897785 0.701722977 0.838850655 0.833346724 0.809334829 1.127068659 1.404755289 1.265508882 0.722287683 1 12.2182938 -6.268858345 9.393127655 1.139503987 0.821658163 0.370363587 0.176890719 0.177965934 184.8685326 0.061895286 0.057009304 5.38E-07 6.268858345 -0.317845824 CYEMASHLR ddPTM_HeLa_A485_30min_R1 6 CYEMASHLR 9 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 0 ;;;;; ;;;;; 185.81 8.73E-08 1093633000 1184691 1460883 1637460 1397494 2358750 1324346 1923023 1535441 1448033 2230365 FALSE FALSE TRUE 1448221.426 1631720.559 2243224.594 1473835.559 2123904.568 1393686.709 1512153.426 1158871.687 1738639.941 1674376.052 0.864931999 0.974524544 1.339737624 0.880229717 1.268475242 0.832361826 0.903114581 0.692121513 1.038380798 1 20.67519215 -6.304315266 24.90711612 0.87457322 1.065455152 0.20716187 0.166638621 667.8239823 387944.9202 0.056734301 0.050035309 4.96E-07 6.304315266 0.190881932 CYEMASHLR ddPTM_HeLa_A486_30min_R1 3 CYEMASHLR 9 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 0 ;; ;; 203.35 2.54E-09 1220040000 973410 1167140 1030200 450160 1648570 1281800 1417750 1507330 1194620 1373580 FALSE FALSE TRUE 905178.9857 1074651.576 1429121.03 1047995.23 1441790.978 1123664.548 1063013.955 1164143.864 1298170.623 1029626.627 0.879133233 1.043729394 1.387999292 1.017840061 1.400304673 1.09133206 1.032426635 1.130646618 1.260816872 1 19.97368984 -4.523125886 24.99968853 1.168945919 0.920282191 0.292380974 0.137531352 8.34469131 844256.6148 0.033572811 0.090797716 3.00E-05 4.523125886 -0.248663728 DAADK(ac)PR ddPTM_HeLa_A485_30min_R1 1 DAADKPR 7 1 Q13185 Q13185 CBX3 Chromobox protein homolog 3 0 1 DAADK(1)PR 93.429 0.014296 0 23250 28563 28543 25714 35848 27705 35845 40270 26686 35195 FALSE TRUE FALSE 28421.88229 31903.19438 39102.24347 27118.69071 32278.84725 29155.59096 28186.42292 30393.71936 32041.63542 26421.53422 1.075709005 1.207469412 1.479938415 1.02638592 1.22168709 1.103478349 1.066797359 1.150338928 1.212709117 1 14.68942662 DADLS(ph)PVNASIIK ddPTM_HeLa_A485_30min_R1 3 DADLSPVNASIIK 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 DADLS(1)PVNASIIK;DADLS(1)PVNASIIK;DADLS(1)PVNASIIK ;; 260.5 2.27E-41 536500000 1453010 1007780 736290 1900020 1304950 925280 1330770 978000 943710 2223980 TRUE FALSE FALSE 1776227.062 1125631.104 1008674.311 2003813.281 1175024.596 973726.23 1046440.118 738143.9666 1133103.941 1669582.715 1.063874851 0.674199064 0.604147552 1.200188085 0.703783398 0.583215327 0.62676746 0.442112846 0.678674935 1 20.67105614 -5.986514233 24.98683712 0.630454983 0.863096673 0.19032264 0.208155249 361.0927554 669039.7099 0.063501558 0.071968353 1.03E-06 5.986514233 0.23264169 DADLS(ph)PVNASIIK ddPTM_HeLa_A486_30min_R1 4 DADLSPVNASIIK 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 DADLS(1)PVNASIIK;DADLS(1)PVNASIIK;DADLS(1)PVNASIIK;DADLS(1)PVNASIIK ;;; 293.29 1.43E-68 723290000 1254250 1442040 679898 539487 1086520 1444270 1677500 1357950 1103380 1549600 TRUE FALSE FALSE 1166333.552 1327767.499 943172.7139 1255953 950238.5302 1266090.652 1257771.757 1048774.429 1199021.867 1161570.074 1.004100896 1.143079982 0.8119809 1.081254613 0.818063888 1.089982155 1.082820387 0.902893809 1.032242388 1 20.14764476 DADLS(ph)PVNASIIKENYEKDEDFLSSTR ddPTM_HeLa_A485_30min_R1 1 DADLSPVNASIIKENYEKDEDFLSSTR 27 2 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 DADLS(1)PVNASIIKENYEKDEDFLSSTR 140.78 1.64E-07 114010000 47931 31057 22042 61048 69613 62579 92046 98525 43101 114390 TRUE FALSE FALSE 58593.08559 34688.84599 30196.25304 64382.89766 62682.08529 65855.53967 72379.62015 74361.58927 51750.97535 85874.67819 0.68230923 0.403947319 0.35163163 0.749730875 0.729925126 0.766879609 0.842851719 0.865931504 0.602633703 1 16.38994517 -5.36243343 5.730630522 0.789808701 0.473062955 0.572341114 0.124866377 0.159569889 7.436000647 0.034640395 0.051856673 4.34E-06 5.36243343 -0.316745746 DAEDALHNLDR ddPTM_HeLa_A486_30min_R1 1 DAEDALHNLDR 11 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 0 0 111.79 0.00687 0 31960 48056 36111 13019 47627 53455 53527 44339 44865 57234 FALSE FALSE TRUE 29719.76904 44247.86754 50094.14629 30308.88994 41653.17756 46860.26559 40133.97845 34243.97761 48753.93432 42902.23387 0.692732437 1.031365119 1.167634917 0.706464144 0.970885984 1.092257008 0.935475262 0.798186354 1.136396172 1 15.38876515 -5.973219466 24.9994876 0.982430706 0.916933821 0.068399988 0.15579986 921.8134205 860503.7287 0.049006824 0.055567262 1.06E-06 5.973219466 -0.065496885 DAEDDGEEEDD ddPTM_HeLa_A485_30min_R1 2 DAEDDGEEEDD 11 0 Q5TB25;Q5TB19;Q9BTT0-2;Q9BTT0;H0YCE2;Q9BTT0-3 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 ; ; 180.45 8.54E-10 0 333157 404350 382070 401280 466640 429120 509580 468920 365826 508470 FALSE FALSE TRUE 407266.6253 451635.2151 523413.5923 423200.9103 420179.6831 451588.0597 400704.0701 353916.6348 439243.9226 381717.7867 1.066931224 1.183165236 1.371205667 1.108674851 1.100760032 1.183041701 1.049739059 0.927168309 1.150703315 1 18.54214689 -6.81992837 4.84170196 1.022306976 1.173200316 0.343177311 0.09293768 0.235491267 11.13170784 0.040720831 0.027535431 1.51E-07 6.81992837 0.150893339 DAEDDGEEEDD ddPTM_HeLa_A486_30min_R1 2 DAEDDGEEEDD 11 0 Q5TB25;Q5TB19;Q9BTT0-2;Q9BTT0;H0YCE2;Q9BTT0-3 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 ; ; 189.7 2.66E-14 121430000 438360 468230 371570 206510 492070 460320 518530 533590 393620 542330 FALSE FALSE TRUE 407633.2277 431125.7495 515451.855 480765.7164 430349.9922 403530.3986 388788.3095 412103.2052 427739.2985 406527.038 1.002721073 1.060509411 1.267939908 1.182616829 1.058601156 0.992628684 0.956365194 1.013716596 1.052179212 1 18.63299178 -5.985155667 4.609449109 1.002571931 1.133280306 0.420774162 0.069179103 0.205146623 11.16985888 0.024619569 0.02700007 1.03E-06 5.985155667 0.130708376 DAELQDQEFGKRDS(ph)LGTYSSR ddPTM_HeLa_A485_30min_R1 4 DAELQDQEFGKRDSLGTYSSR 21 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DAELQDQEFGKRDS(1)LGTYSSR;DAELQDQEFGKRDS(0.995)LGT(0.005)YSSR;DAELQDQEFGKRDS(0.999)LGT(0.001)YSSR;DAELQDQEFGKRDS(0.99)LGT(0.007)YS(0.002)SR ;;; 217.02 8.66E-36 13673500000 3112206 2906922 2026921 4119166 4103788 3706536 5847580 6716780 2724183 5547330 TRUE FALSE FALSE 3804505.488 3246861.241 2776763.425 4344185.608 3695200.457 3900604.494 4598196.763 5069479.173 3270901.54 4164482.722 0.913560157 0.779655352 0.666772709 1.04315131 0.887313192 0.936636013 1.104145958 1.217313052 0.785428049 1 21.98970588 -5.675563573 1.254204003 1.025819856 0.795979909 0.281086088 0.132821858 0.549768594 1.807231127 0.052482284 0.082710498 2.11E-06 5.675563573 -0.229839948 DAELQDQEFGKRDS(ph)LGTYSSR ddPTM_HeLa_A486_30min_R1 4 DAELQDQEFGKRDSLGTYSSR 21 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DAELQDQEFGKRDS(1)LGTYSSR;DAELQDQEFGKRDS(0.887)LGT(0.112)YS(0.001)SR;DAELQDQEFGKRDS(0.997)LGT(0.003)YSSR;DAELQDQEFGKRDS(0.999)LGT(0.001)YSSR ;;; 209.62 3.35E-27 11670200000 5529070 5460820 3090170 3258160 6231910 6189100 8964900 8551000 4223240 8560500 TRUE FALSE FALSE 5141510.745 5028084.735 4286766.582 7585161.138 5450245.738 5425551.768 6721787.199 6604123.967 4589313.844 6416895.08 0.80124588 0.783569728 0.668043739 1.182060957 0.849358712 0.845510438 1.047513963 1.029177489 0.715192283 1 22.61344396 -5.227365968 24.99826781 0.949083521 0.754214772 0.349481338 0.126036209 730.025227 535588.756 0.033610587 0.058211074 5.92E-06 5.227365968 -0.194868749 DAFLTNQVESLT(ph)QERR ddPTM_HeLa_A486_30min_R1 1 DAFLTNQVESLTQERR 16 1 A0A140T9S5;Q9Y334-2;Q9Y334 A0A140T9S5 VWA7 von Willebrand factor A domain-containing protein 7 1 0 DAFLT(0.003)NQVES(0.003)LT(0.994)QERR 49.31 0.01098 0 311070 301480 179530 118260 331650 333040 371260 389810 267900 442010 TRUE FALSE FALSE 289265.5994 277589.6268 249048.824 275315.2565 290051.3645 291952.9109 278366.8212 301058.7725 291121.7877 331327.819 0.873049538 0.837809598 0.75166892 0.830945187 0.875421102 0.881160271 0.840155294 0.908643208 0.87865181 1 18.33789981 -8.570653119 0.317617413 1.029311904 0.81659737 0.656878512 0.035163141 2.155827504 0.430928077 0.139882854 0.044644744 2.69E-09 8.570653119 -0.212714534 DAGEGGLSLAIEGPSK ddPTM_HeLa_A485_30min_R1 2 DAGEGGLSLAIEGPSK 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 256.95 3.44E-42 93693000 98579 101918 93442 105161 135807 109940 138771 132686 102293 167215 FALSE FALSE TRUE 120507.5585 113836.4235 128010.0842 110905.6791 122285.5782 115696.2884 109121.4422 100144.5505 122822.2668 125531.3779 0.959979572 0.906836406 1.019745712 0.883489698 0.974143519 0.921652342 0.869276224 0.797765086 0.978418854 1 16.9376885 -6.525539868 11.05154816 0.894628866 0.946928371 0.049477137 0.063241126 0.256592376 756.0687018 0.022671301 0.018079699 2.98E-07 6.525539868 0.052299505 DAGGPRPES(ph)PVPAGR ddPTM_HeLa_A485_30min_R1 3 DAGGPRPESPVPAGR 15 1 E9PS47;E9PLE4;Q9BVG9 E9PS47 PTDSS2 Phosphatidylserine synthase 2 1 0 DAGGPRPES(1)PVPAGR;DAGGPRPES(1)PVPAGR;DAGGPRPES(1)PVPAGR ;; 109.22 0.00012185 2484820000 2456210 2659160 1924410 1819090 2389820 2215650 2429550 3482810 2201970 4154340 TRUE FALSE FALSE 3002585.441 2970125.63 2636329.34 1918462.281 2151881.13 2331658.008 1910456.795 2628645.387 2643885.181 3118739.493 0.96275609 0.9523481 0.845318869 0.615140279 0.68998425 0.747628333 0.612573381 0.842855068 0.847741592 1 21.57253162 -4.942809622 4.010552568 0.747000464 0.95457927 0.312452768 0.110833049 0.226321174 7.48420996 0.0294218 0.064809338 1.14E-05 4.942809622 0.207578806 DAGGPRPES(ph)PVPAGR ddPTM_HeLa_A486_30min_R1 2 DAGGPRPESPVPAGR 15 1 E9PS47;E9PLE4;Q9BVG9 E9PS47 PTDSS2 Phosphatidylserine synthase 2 1 0 DAGGPRPES(1)PVPAGR;DAGGPRPES(1)PVPAGR ; 104.38 0.0001602 1974440000 1164490 1074890 933280 271800 1285920 1029620 935400 916850 1029900 920280 TRUE FALSE FALSE 1082865.264 989711.8017 1294671.01 632764.136 1124627.923 902595.9528 701353.0263 708103.2697 1119172.561 689835.898 1.569743279 1.434706145 1.87678115 0.917267625 1.630283269 1.308421257 1.016695461 1.02648075 1.622375067 1 19.39589368 -5.590503446 0.793738134 1.183988788 1.604522569 0.222134672 0.280571426 1.169080241 1.520125789 0.144488011 0.310154217 2.57E-06 5.590503446 0.420533781 DAGPQGLHPSVQHQGRLS(ph)LDLSHR ddPTM_HeLa_A485_30min_R1 1 DAGPQGLHPSVQHQGRLSLDLSHR 24 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 DAGPQGLHPSVQHQGRLS(1)LDLSHR 264.86 8.17E-62 556010000 85320 206330 194960 25533 259320 125260 162470 182140 153460 97669 TRUE FALSE FALSE 104299.1396 230458.4987 267083.817 26927.80314 233501.1903 131818.4199 127756.9572 137469.8794 184258.0144 73321.91576 1.422482467 3.143105254 3.642619184 0.367254495 3.184602964 1.797803815 1.742411609 1.874881173 2.513000546 1 16.16195686 -10.28807596 0.182124278 7.30E-10 2.594314925 0.124746332 0.923604281 52.88820918 1.856833297 30.556012 3.500102359 5.15E-11 10.28807596 2.594314925 DAGPQGLHPSVQHQGRLS(ph)LDLSHR ddPTM_HeLa_A486_30min_R1 1 DAGPQGLHPSVQHQGRLSLDLSHR 24 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 DAGPQGLHPSVQHQGRLS(1)LDLSHR 227.33 1.46E-38 569790000 130340 142330 147890 9404.6 182660 77176 97482 97976 123400 35106 TRUE FALSE FALSE 121203.8391 131051.2524 205156.9686 21894.38408 159749.0796 67654.80979 73090.97254 75669.0036 134096.4114 26315.2291 4.605843963 4.980053639 7.796130821 0.832004312 6.070594292 2.570937518 2.777516102 2.875483368 5.095772142 1 14.68361033 -5.257383562 24.99995384 3.206727291 5.712613731 0.351889512 1.705285498 415.2437972 2559541.388 0.447483308 0.740265853 5.53E-06 5.257383562 2.50588644 DAGRPGERGS(ph)GGLFSPSTAHVPDGALGQR ddPTM_HeLa_A485_30min_R1 3 DAGRPGERGSGGLFSPSTAHVPDGALGQR 29 2 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DAGRPGERGS(0.98)GGLFS(0.02)PSTAHVPDGALGQR;DAGRPGERGS(1)GGLFSPSTAHVPDGALGQR;DAGRPGERGS(0.998)GGLFS(0.001)PSTAHVPDGALGQR ;; 159.91 2.26E-12 2106130000 482380 600820 598620 340455 857160 568820 839370 863810 601630 681080 TRUE FALSE FALSE 589683.7668 671080.6726 820074.4487 359053.1946 771818.1407 598602.5356 660031.7425 651959.2431 722371.6225 511299.2903 1.153304489 1.312500692 1.603902967 0.702236833 1.5095232 1.170747832 1.290891177 1.275102969 1.412815617 1 18.9638085 DAGRPGERGS(ph)GGLFSPSTAHVPDGALGQR ddPTM_HeLa_A486_30min_R1 2 DAGRPGERGSGGLFSPSTAHVPDGALGQR 29 2 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DAGRPGERGS(0.632)GGLFS(0.112)PS(0.128)T(0.128)AHVPDGALGQR;DAGRPGERGS(0.786)GGLFS(0.203)PS(0.009)T(0.002)AHVPDGALGQR ; 83.185 0.0011605 1678010000 548670 595820 482530 148775 739230 630350 731870 723500 564290 480070 TRUE FALSE FALSE 510211.0663 548605.0533 669378.5386 346355.7187 646508.8804 552583.8259 548748.3851 558774.8439 613203.1115 359857.3473 1.417814782 1.524507023 1.860121917 0.962480609 1.796569905 1.535563551 1.524905325 1.55276764 1.704017206 1 18.45706559 -10.48813318 14.75930696 0.999999985 1.54097529 0.3269972 0.233299859 1.09E-07 3.88E-09 0.213534358 0.051789687 3.25E-11 10.48813318 0.540975305 DAGTIAGLNVLR ddPTM_HeLa_A485_30min_R1 3 DAGTIAGLNVLR 12 0 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 217.66 2.26E-20 134686000 158133 191697 162745 143401 219860 201294 226759 254657 155778 220923 FALSE FALSE TRUE 193309.1403 214114.2966 222951.1479 151234.6335 197969.9664 211833.4426 178310.0872 192201.9715 187041.2157 165850.9619 1.165559356 1.29100425 1.344286131 0.911870705 1.193661853 1.277251818 1.075122418 1.15888367 1.127766843 1 17.33952785 -14 0.051906192 0.299672486 1.509973206 0.214683379 0.112496136 849.2614532 3.2456602 80.60344122 17.00603636 1.00E-14 14 1.210300721 DAGTIAGLNVLR ddPTM_HeLa_A486_30min_R1 1 DAGTIAGLNVLR 12 0 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 123.51 0.0010205 0 87864 76152 70999 45202 138030 80778 92900 88709 77994 81711 FALSE FALSE TRUE 81705.18733 70117.43818 98491.71422 105232.5404 120716.9903 70812.43165 69655.4374 68511.8972 84754.58272 61250.03375 1.333961507 1.14477387 1.608027101 1.718081345 1.970888552 1.156120696 1.137231004 1.118560971 1.383747527 1 15.90242302 DAHDVS(ph)PT(ph)STDTEAQLTVER ddPTM_HeLa_A485_30min_R1 1 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 2 0 DAHDVS(0.96)PT(0.623)S(0.379)T(0.038)DTEAQLTVER 98.882 0.00067496 584620000 180370 215980 184410 210120 272410 218180 301110 378570 198460 338180 TRUE FALSE FALSE 220492.6842 241236.9822 252630.9329 221598.3235 245287.9039 229603.5674 236775.3887 285725.1139 238289.1016 253877.9497 0.868498759 0.950208486 0.995088125 0.872853762 0.966164664 0.904385622 0.932634712 1.125442813 0.938597077 1 17.95377557 -7.055605505 24.99805046 1.025019845 0.928872175 0.369071437 0.056385089 297.745499 133853.3785 0.02479092 0.01431313 8.80E-08 7.055605505 -0.09614767 DAHDVS(ph)PTST(ph)DTEAQLTVER ddPTM_HeLa_A485_30min_R1 1 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 2 0 DAHDVS(0.992)PT(0.008)S(0.364)T(0.636)DTEAQLTVER 232.44 4.36E-36 741710000 162870 163980 166290 164410 191720 170330 238500 243040 171080 226530 TRUE FALSE FALSE 199099.8696 183156.0346 227807.5909 173391.302 172631.6836 179248.2154 187542.5266 183434.0589 205414.1868 170060.24 1.170760841 1.077006798 1.339569972 1.019587542 1.015120781 1.054027769 1.102800553 1.078641656 1.207890726 1 17.37568635 -5.317514951 24.99993622 1.070199904 1.183903833 0.335498784 0.081675859 353.8344654 157747.6937 0.022905166 0.033973876 4.81E-06 5.317514951 0.113703929 DAHDVS(ph)PTST(ph)DTEAQLTVER ddPTM_HeLa_A486_30min_R1 2 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 2 0 DAHDVS(1)PTS(0.47)T(0.53)DTEAQLTVER;DAHDVS(0.606)PT(0.394)S(0.293)T(0.706)DTEAQLTVER ; 248.16 2.07E-46 1459990000 313750 400210 391240 140656 513260 389840 523990 478470 359350 445230 TRUE FALSE FALSE 291757.7452 368495.9021 542738.6058 327454.2764 448882.1448 341745.5044 392882.1598 369532.8259 390498.7473 333741.51 0.874202748 1.104135659 1.626224456 0.981161367 1.344999442 1.023982616 1.177204956 1.107242626 1.170063464 1 18.34837161 -6.29663254 24.99154289 1.107495563 1.19464974 0.0470702 0.198146934 2391.521022 1698271.991 0.06991368 0.06166065 5.05E-07 6.29663254 0.087154177 DAHDVS(ph)PTSTDTEAQLTVER ddPTM_HeLa_A485_30min_R1 8 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 DAHDVS(0.945)PT(0.055)STDTEAQLTVER;DAHDVS(0.644)PT(0.353)S(0.003)T(0.001)DTEAQLTVER;DAHDVS(0.998)PT(0.002)STDTEAQLTVER;DAHDVS(0.885)PT(0.1)S(0.013)T(0.002)DTEAQLTVER;DAHDVS(0.998)PT(0.002)STDTEAQLTVER;DAHDVS(0.976)PT(0.024)STDTEAQLTVER;DAHDVS(0.83)PT(0.09)S(0.027)T(0.053)DTEAQLTVER;DAHDVS(0.991)PT(0.009)STDTEAQLTVER ;;;;;;; 386.84 1.21E-157 47703210000 7387294 9776689 8645302 8212784 11365817 10090697 11323346 12722834 10057255 11439123 TRUE FALSE FALSE 9030572.064 10919987.73 11843558.97 8661427.594 10234196.35 10619030.29 8904020.624 9602539.013 12075653.83 8587560.158 1.051587634 1.271605384 1.379152955 1.008601679 1.191746685 1.236559639 1.036851033 1.118191761 1.406179824 1 23.03381687 -5.26175941 24.99717303 1.149072547 1.237864317 0.084527315 0.136704485 79.92057964 6242859.077 0.037480177 0.059904815 5.47E-06 5.26175941 0.088791771 DAHDVS(ph)PTSTDTEAQLTVER ddPTM_HeLa_A486_30min_R1 6 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 DAHDVS(0.983)PT(0.017)STDTEAQLTVER;DAHDVS(0.994)PT(0.006)STDTEAQLTVER;DAHDVS(0.972)PT(0.028)STDTEAQLTVER;DAHDVS(0.997)PT(0.003)STDTEAQLTVER;DAHDVS(0.998)PT(0.002)STDTEAQLTVER;DAHDVS(0.998)PT(0.001)STDTEAQLTVER ;;;;; 392.44 7.14E-158 33719520000 4047020 4511610 4264090 1460358 5691200 4294620 5180440 4957340 4228500 4638350 TRUE FALSE FALSE 3763344.797 4154093.593 5915259.844 3399787.226 4977356.628 3764793.449 3884239.119 3828661.9 4595029.785 3476876.969 1.082392282 1.194777275 1.701314109 0.977827877 1.431559607 1.082808935 1.117163234 1.101178424 1.321596889 1 21.72936059 -6.291563081 24.80984968 1.130411498 1.27986298 0.128710696 0.198732864 1437.54358 1183954.462 0.068533596 0.060447556 5.11E-07 6.291563081 0.149451482 DAIAQAVR ddPTM_HeLa_A485_30min_R1 2 DAIAQAVR 8 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 166.86 7.13E-08 77728000 114123 163652 146238 133693 180460 155471 205620 203375 152686 189521 FALSE FALSE TRUE 139509.2676 182789.6778 200337.5217 140996.3101 162492.7688 163611.2212 161687.6072 153496.9624 183328.6797 142276.9026 0.980547546 1.284745974 1.408081832 0.990999294 1.14208818 1.149949276 1.136429064 1.078860726 1.288534375 1 17.11834195 -5.277947903 24.99974252 1.119496262 1.230487238 0.139575466 0.126370164 1588.40909 2405409.592 0.035194371 0.052357902 5.27E-06 5.277947903 0.110990976 DAKIS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 DAKISPPR 8 1 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 DAKIS(1)PPR 40.589 0.037229 100040000 39136 39892 38512 16061 51786 37340 48816 51168 28989 53636 TRUE FALSE FALSE 36392.7685 36730.81264 53424.87779 37390.81968 45290.51699 32733.37045 36601.72048 39518.16339 31501.78986 40205.19649 0.90517574 0.913583712 1.32880529 0.929999675 1.12648416 0.814157704 0.910372879 0.982911833 0.78352533 1 15.29509436 -6.261241417 24.99999997 0.897886748 1.043585244 0.224927168 0.132319069 28.85877998 3644667.331 0.044833529 0.04218001 5.48E-07 6.261241417 0.145698497 DALGDSLQVPVS(ph)PS(ph)STTSSR ddPTM_HeLa_A486_30min_R1 2 DALGDSLQVPVSPSSTTSSR 20 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 2 0 DALGDS(0.001)LQVPVS(0.991)PS(0.229)S(0.2)T(0.175)T(0.153)S(0.134)S(0.117)R;DALGDSLQVPVS(1)PS(0.51)S(0.412)T(0.057)T(0.008)S(0.007)S(0.006)R ; 119.38 6.84E-07 0 93705 103088 81034 40986 106535 101037 105803 106577 81072 123332 TRUE FALSE FALSE 87136.76339 94918.93144 112412.535 95417.47932 93172.3869 88572.08221 79329.97033 82311.74366 88099.38624 92448.86444 0.942540116 1.026718197 1.215942842 1.032110885 1.007826191 0.958065659 0.858095671 0.890348888 0.952952605 1 16.49636798 -6.143838218 2.070953142 0.916868254 1.062748903 0.386587753 0.072859089 0.322713976 2.726778077 0.02915783 0.029019099 7.18E-07 6.143838218 0.145880648 DALGDSLQVPVS(ph)PSSTTSSR ddPTM_HeLa_A485_30min_R1 5 DALGDSLQVPVSPSSTTSSR 20 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DALGDSLQVPVS(0.967)PS(0.026)S(0.004)T(0.001)T(0.001)S(0.001)S(0.001)R;DALGDSLQVPVS(0.866)PS(0.12)S(0.012)T(0.001)TSSR;DALGDSLQVPVS(0.998)PS(0.002)STTSSR;DALGDSLQVPVS(0.985)PS(0.013)S(0.001)TTSSR;DALGDSLQVPVS(0.989)PS(0.009)S(0.002)TTSSR ;;;; 335.98 3.18E-114 14919500000 2382730 2882390 2569020 2784850 3259550 2843190 3629990 3590860 2470980 3598500 TRUE FALSE FALSE 2912760.068 3219460.437 3519407.404 2936979.304 2935017.757 2992055.032 2854412.982 2710195.955 2966883.021 2701460.175 1.078216919 1.19174825 1.302779673 1.087182158 1.086456052 1.10756955 1.056618568 1.003233725 1.098251622 1 21.36530798 -5.489653757 19.40990572 1.063520196 1.191662785 0.489100167 0.060503316 37.2264416 21746.64271 0.017340629 0.025657994 3.24E-06 5.489653757 0.128142589 DALGDSLQVPVS(ph)PSSTTSSR ddPTM_HeLa_A486_30min_R1 5 DALGDSLQVPVSPSSTTSSR 20 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DALGDSLQVPVS(0.999)PS(0.001)STTSSR;DALGDSLQVPVS(0.998)PS(0.001)S(0.001)TTSSR;DALGDSLQVPVS(0.661)PS(0.229)S(0.06)T(0.045)T(0.003)S(0.001)S(0.001)R;DALGDSLQVPVS(0.996)PS(0.004)STTSSR;DALGDSLQVPVS(0.979)PS(0.018)S(0.002)T(0.001)TSSR ;;;; 322.45 2.85E-102 10499080000 2579100 2540490 2059920 968890 2975080 2464490 2873970 2871460 2325420 3041510 TRUE FALSE FALSE 2398318.408 2339172.32 2857576.191 2255624.885 2601917.725 2160446.281 2154872.308 2217691.242 2526989.278 2279896.099 1.051941976 1.025999527 1.253380008 0.989354246 1.141243992 0.947607341 0.945162505 0.972715924 1.10837914 1 21.12053665 -6.263820588 24.96832421 0.989967073 1.091916279 0.27279406 0.07949036 281.8803131 2955653.734 0.02706825 0.024997537 5.45E-07 6.263820588 0.101949207 DALGDSLQVPVSPS(ph)STTSSR ddPTM_HeLa_A486_30min_R1 1 DALGDSLQVPVSPSSTTSSR 20 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DALGDSLQVPVS(0.046)PS(0.449)S(0.449)T(0.046)T(0.005)S(0.002)S(0.002)R 294.75 8.75E-87 2347400000 1167000 1150200 899890 415820 1340600 1074700 1293100 1293700 1048300 1432800 TRUE FALSE FALSE 1085199.326 1059053.963 1248351.508 968049.9744 1172449.447 942114.4407 969552.703 999152.7513 1139167.488 1074017.554 1.010411163 0.986067648 1.162319464 0.901335337 1.09164831 0.87718719 0.902734503 0.930294619 1.060660027 1 20.03458614 -6.258948722 24.99193196 0.946603635 1.028059343 0.183722241 0.079418032 375.9153967 3772044.435 0.026293862 0.025111166 5.51E-07 6.258948722 0.081455708 DALNIETAIK ddPTM_HeLa_A485_30min_R1 2 DALNIETAIK 10 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 185.61 4.31E-09 145489000 203927 187067 143777 272900 226810 256950 338090 305000 210268 423890 FALSE FALSE TRUE 249289.8576 208942.8584 196966.0954 287807.836 204228 270403.5047 265854.3096 230198.2718 252466.8589 318222.0241 0.78338342 0.656594587 0.618958087 0.904424629 0.641778333 0.849732213 0.835436549 0.723388874 0.79336702 1 18.27967416 -14 0.14448063 1.860862789 0.671749473 0.434176518 0.087553082 129.2183541 1.126898474 31.93943218 0.488433129 1.00E-14 14 -1.189113316 DALNIETAIK ddPTM_HeLa_A486_30min_R1 1 DALNIETAIK 10 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 154.24 0.00023307 35398000 43542 56991 41598 22964 60255 59886 66422 63115 46478 65745 FALSE FALSE TRUE 40489.93065 52474.8256 57705.85963 53461.35254 52697.25604 52497.8742 49802.51306 48745.09229 50506.75046 49282.02407 0.821596341 1.064786331 1.170931201 1.084804318 1.069299751 1.065254019 1.010561437 0.989104916 1.024851382 1 15.58877389 -6.813253764 6.408784707 1.004627408 1.055427274 0.045307003 0.083637037 0.621484071 55.75371048 0.036528917 0.024751771 1.54E-07 6.813253764 0.050799865 DALSDLALHFLNK ddPTM_HeLa_A485_30min_R1 2 DALSDLALHFLNK 13 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ; ; 125.97 0.00010183 43795000 108698 105774 89532 129167 149811 107317 137105 133360 111585 173472 FALSE FALSE TRUE 132877.4951 118143.3492 122653.6125 136223.0661 134895.2908 112935.9522 107811.3967 100653.2509 133979.086 130228.6229 1.020340169 0.907199558 0.941832984 1.046030151 1.035834426 0.86721298 0.827862526 0.772896531 1.028799069 1 16.99068705 -6.274256505 24.35500211 0.880692015 0.986043031 0.221430799 0.081355613 749.3666588 1423935.918 0.028737277 0.025521201 5.32E-07 6.274256505 0.105351016 DALSDLALHFLNK ddPTM_HeLa_A486_30min_R1 2 DALSDLALHFLNK 13 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ; ; 149.26 2.34E-07 43623000 127563 135400 91129 52272 227286 136533 156636 155819 105983 150190 FALSE FALSE TRUE 118621.4924 124670.4109 126416.5893 121691.8577 198777.6705 119688.9466 117444.0161 120342.4152 115169.6918 112581.4464 1.053650457 1.107379722 1.122890079 1.080922848 1.765634364 1.063132074 1.043191572 1.068936481 1.022989981 1 16.78060956 -6.487771613 24.99773665 1.041471989 1.226569526 0.191220311 0.192218433 1131.425807 805623.3587 0.070955973 0.062547113 3.25E-07 6.487771613 0.185097538 DANIMS(ph)PGSSLPSLHVR ddPTM_HeLa_A485_30min_R1 2 DANIMSPGSSLPSLHVR 17 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 DANIMS(1)PGSSLPSLHVR;DANIMS(0.999)PGS(0.001)SLPSLHVR ; 130.19 9.64E-06 146832000 139396 196266 212473 120368 287360 147577 186035 175697 192807 203536 TRUE FALSE FALSE 170404.1593 219217.6014 291075.6044 126943.3991 258749.4294 155303.9035 146287.1025 132607.0353 231501.5964 152798.221 1.115223451 1.43468687 1.904967234 0.83079108 1.693406034 1.016398637 0.957387472 0.867857194 1.515080443 1 17.22126822 -6.296863596 24.66685326 1.055963413 1.394870593 0.206327538 0.317471655 814.7183833 567308.0613 0.108789891 0.095947459 5.05E-07 6.296863596 0.33890718 DANIMS(ph)PGSSLPSLHVR ddPTM_HeLa_A486_30min_R1 2 DANIMSPGSSLPSLHVR 17 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 DANIMS(1)PGSSLPSLHVR;DANIMS(1)PGSSLPSLHVR ; 109.23 1.71E-05 72617000 152271 183398 164357 20111.5 213070 145301 166181 173427 167521 93545 TRUE FALSE FALSE 141597.5892 168864.8746 228000.432 46820.58838 186344.7738 127375.2399 124600.7561 133941.458 182041.8552 70120.72312 2.019340117 2.408202127 3.251541369 0.667713998 2.657485056 1.816513496 1.776946252 1.910155116 2.59612062 1 16.09755325 -10.98422504 2.915889607 1.94E-10 2.111782702 0.210396479 0.652159617 80500407.71 74065096.21 543098347.6 0.162795533 1.04E-11 10.98422504 2.111782702 DANSSFFDNSSS(ph)PHLLDQLK ddPTM_HeLa_A485_30min_R1 1 DANSSFFDNSSSPHLLDQLK 20 0 P49454 P49454 CENPF Centromere protein F 1 0 DANS(0.001)SFFDNS(0.088)S(0.397)S(0.514)PHLLDQLK 78.758 0.0019441 340300000 18040 24504 31066 10732 38787 30221 21554 41948 30725 17253 TRUE FALSE FALSE 22052.93576 27369.52964 42558.60616 11318.26199 34925.23009 31803.32483 16948.81182 31660.18723 36891.22567 12952.14462 1.702647431 2.113127243 3.285834695 0.873852348 2.696482407 2.455448558 1.308571848 2.444397292 2.8482716 1 13.66090338 -10.40555069 6.959469681 0.999913486 2.187165137 0.211100808 0.691277128 0.000896538 7.66E-05 0.646125722 0.156697382 3.93E-11 10.40555069 1.187251651 DAPIS(ph)PAS(ph)IAS(ph)SSSTPSSK ddPTM_HeLa_A486_30min_R1 1 DAPISPASIASSSSTPSSK 19 0 Q04727-4;Q04727;Q04727-3;H0Y5S0;H7C4E4 Q04727-4 TLE4 Transducin-like enhancer protein 4 3 0 DAPIS(0.994)PAS(0.683)IAS(0.231)S(0.218)S(0.205)S(0.192)T(0.179)PS(0.154)S(0.143)K 40.962 0.010462 0 13783 11627 3865.4 1063.1 8584.3 18947 16576 15518 8027.9 13345 TRUE FALSE FALSE 12816.88288 10705.63418 5362.186399 2474.950526 7507.577049 16609.51178 12428.50948 11984.89016 8723.764836 10003.32514 1.28126225 1.070207559 0.536040399 0.247412784 0.75050815 1.660399072 1.24243782 1.198090634 0.872086503 1 13.28819202 -6.172202405 22.42120293 1.20997329 0.750546721 0.291986076 0.323316185 36.42043272 9147.943204 0.116109468 0.116109579 6.73E-07 6.172202405 -0.459426568 DAPIS(ph)PASIASSSSTPSSK ddPTM_HeLa_A485_30min_R1 2 DAPISPASIASSSSTPSSK 19 0 Q04727-4;Q04727;Q04727-3;H0Y5S0;H7C4E4 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 DAPIS(1)PASIASSSSTPSSK;DAPIS(0.996)PAS(0.004)IASSSSTPSSK ; 428.64 4.59E-245 0 219190 208520 155795 240030 298850 227960 320600 322720 192505 308440 TRUE FALSE FALSE 267948.0593 232904.6001 213430.0537 253142.2311 269095.4447 239895.6331 252101.1909 243572.414 231138.9877 231551.5844 1.157185169 1.005843258 0.921738688 1.093243355 1.162140373 1.036035377 1.088747423 1.051914262 0.998218122 1 17.8209741 -7.72061156 4.530646713 0.997876629 1.06251972 0.135109951 0.066540838 0.446031797 19.44734983 0.056572157 0.018097052 1.90E-08 7.72061156 0.064643091 DAPQDFHPDR ddPTM_HeLa_A485_30min_R1 4 DAPQDFHPDR 10 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 132.56 0.00022826 1655366000 1185722 1515260 1395231 1262499 1797237 1498663 1830933 1942272 1359141 1843448 FALSE FALSE TRUE 1449481.768 1692456.476 1911385.007 1331466.124 1618297.774 1577130.677 1439739.207 1465926.747 1631908.132 1383910.34 1.047381269 1.222952403 1.381148007 0.962104325 1.169366055 1.139619115 1.040341391 1.059264249 1.179200765 1 20.40031905 -5.272243688 24.98814998 1.085761612 1.217739753 0.286047712 0.099891922 943.992099 2183258.078 0.027979594 0.04198407 5.34E-06 5.272243688 0.131978141 DAPQDFHPDR ddPTM_HeLa_A486_30min_R1 4 DAPQDFHPDR 10 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 160.72 2.07E-06 2594771500 2766622 2886183 2243930 993863.2 3477072 2728810 3065921 3261789 2444599 3023965 FALSE FALSE TRUE 2572696.085 2657471.348 3112839.791 2313763.757 3040945.207 2392157.167 2298795.138 2519150.849 2656498.81 2266744.481 1.134974015 1.172373582 1.373264528 1.020743086 1.341547419 1.055327227 1.01413951 1.111351928 1.171944536 1 21.11219034 -6.311890247 24.96381132 1.073986253 1.205282931 0.30699218 0.10356783 470.6039536 232860.2786 0.0351939 0.031038156 4.88E-07 6.311890247 0.131296678 DAPS(ph)PKPR ddPTM_HeLa_A485_30min_R1 4 DAPSPKPR 8 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 DAPS(1)PKPR;DAPS(1)PKPR;DAPS(1)PKPR;DAPS(1)PKPR ;;; 125.74 0.0002947 2146590000 3544790 2719580 1457790 5499730 2158030 2336180 3105970 2496830 2052690 6233650 TRUE FALSE FALSE 4333316.306 3037611.224 1997087.185 5800166.324 1943168.956 2458498.772 2442354.136 1884478.528 2464646.055 4679715.777 0.925978524 0.649101648 0.426753948 1.239427051 0.41523226 0.525352156 0.521902238 0.402690808 0.526665758 1 22.15798948 -4.275841899 4.734124273 0.612645114 0.940848868 0.097079852 0.26154247 0.381782175 23.55940861 0.064623494 0.402532091 5.30E-05 4.275841899 0.328203754 DAPS(ph)PKPR ddPTM_HeLa_A486_30min_R1 4 DAPSPKPR 8 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 DAPS(1)PKPR;DAPS(1)PKPR;DAPS(1)PKPR;DAPS(1)PKPR ;;; 133.81 0.00024538 2400060000 3257300 2793420 1099740 1175160 1413140 3086870 3079640 2470690 2315450 4998380 TRUE FALSE FALSE 3028980.091 2572059.226 1525588.78 2735831.869 1235890.804 2706043.364 2309081.499 1908167.822 2516155.07 3746753.114 0.80842799 0.686476837 0.407176223 0.730187388 0.329856483 0.722236903 0.616288671 0.509285711 0.671556143 1 21.83720949 -8.031365334 20.51400657 1.000000006 0.59696472 0.412936616 0.141985226 324.0676849 211952.6079 0.131883879 0.034052266 9.30E-09 8.031365334 -0.403035286 DAPSGIGSIFLSASELEDGSEEMGQGAVS(ph)SSPR ddPTM_HeLa_A485_30min_R1 1 DAPSGIGSIFLSASELEDGSEEMGQGAVSSSPR 33 0 O14879 O14879 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 1 0 DAPSGIGSIFLSASELEDGSEEMGQGAVS(0.385)S(0.33)S(0.284)PR 62.605 0.0062462 15373000 9898.5 13193 15799 11523 20573 16505 16606 18528 13085 17997 TRUE FALSE FALSE 12100.38718 14735.80659 21643.70755 12152.47231 18524.67988 17369.17628 13057.99244 13983.97895 15711.03948 13510.67911 0.895616503 1.090678453 1.601970365 0.899471612 1.371113897 1.285588691 0.966494159 1.035031536 1.162860827 1 13.72181257 -6.763274661 24.9991912 1.044015927 1.199843312 0.11359181 0.203773904 112.9774107 1538870.022 0.082126554 0.058600625 1.72E-07 6.763274661 0.155827385 DAPSLEEVEGHVADGS(ph)ATEMGTTK ddPTM_HeLa_A485_30min_R1 1 DAPSLEEVEGHVADGSATEMGTTK 24 0 E9PHA2;Q15003;C9J470;Q15003-2 E9PHA2 NCAPH Condensin complex subunit 2 1 0 DAPSLEEVEGHVADGS(0.709)AT(0.291)EMGTTK 153.06 1.18E-09 324240000 73086 61269 48335 114100 105600 80436 113950 120010 69321 164150 TRUE FALSE FALSE 89343.72856 68433.87658 66216.12789 120332.9941 95086.09322 84647.50458 89603.65161 90577.35933 83233.08885 123230.426 0.72501355 0.55533263 0.537335868 0.976487691 0.771612144 0.68690426 0.727122794 0.735024314 0.675426448 1 16.91099898 -14 0.23566741 2.576918559 0.681060176 0.360960288 0.115039999 201.1174417 2.01106659 152.0585208 0.203053478 1.00E-14 14 -1.895858383 DAPTS(ph)PASVASSSST(ph)PSSK ddPTM_HeLa_A486_30min_R1 1 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 DAPT(0.003)S(0.996)PASVASSS(0.001)S(0.018)T(0.848)PS(0.131)S(0.002)K 288.95 1.87E-70 277640000 249860 251780 120850 105410 221770 244750 321150 284080 183010 298760 TRUE FALSE FALSE 232346.1043 231828.0358 167646.3565 245399.8071 193953.5387 214555.2334 240794.8732 219401.1854 198873.4542 223948.5514 1.037497688 1.035184351 0.748593172 1.095786535 0.86606293 0.958055911 1.075224071 0.979694595 0.888031885 1 17.77280781 -6.553057121 24.9711184 0.98870185 0.952652745 0.018273184 0.100729754 978.0646933 809292.6244 0.037926082 0.029377707 2.80E-07 6.553057121 -0.036049104 DAPTS(ph)PASVASSSSTPSSK ddPTM_HeLa_A485_30min_R1 5 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 DAPT(0.001)S(0.928)PAS(0.072)VASSSSTPSSK;DAPTS(0.999)PAS(0.001)VASSSSTPSSK;DAPTS(0.998)PAS(0.002)VASSSSTPSSK;DAPT(0.001)S(0.999)PASVASSSSTPSSK;DAPT(0.026)S(0.974)PASVASSSSTPSSK ;;;; 432.57 5.10E-183 7600820000 1964550 2017990 1416030 2592930 2630050 2264690 3306830 3381890 1910230 3161420 TRUE FALSE FALSE 2401557.37 2253976.376 1939878.423 2734575.2 2368192.987 2383265.667 2600298.756 2552476.175 2293595.639 2373336.176 1.011890938 0.94970801 0.817363525 1.152207272 0.997832929 1.004183769 1.095630186 1.075480246 0.9664015 1 21.17848504 -5.26227606 24.9997049 1.043680615 0.928659548 0.373557381 0.068401316 80.47675208 2404642.375 0.018836646 0.029926525 5.47E-06 5.26227606 -0.115021067 DAPTS(ph)PASVASSSSTPSSK ddPTM_HeLa_A486_30min_R1 6 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 DAPTS(1)PASVASSSSTPSSK;DAPT(0.001)S(0.998)PAS(0.001)VASSSSTPSSK;DAPT(0.014)S(0.985)PASVASSSSTPSSK;DAPTS(1)PASVASSSSTPSSK;DAPT(0.062)S(0.887)PAS(0.05)VASSSSTPSSK;DAPT(0.032)S(0.968)PASVASSSSTPSSK ;;;;; 319.33 7.93E-90 7428440000 2020230 2009201 1153299 789680 2040805 2158351 2600600 2489660 1626573 2530060 TRUE FALSE FALSE 1878622.309 1849984.595 1599887.259 1838414.948 1784828.207 1892075.598 1949902.374 1922818.767 1767565.657 1896516.508 0.990564702 0.975464536 0.843592583 0.969364063 0.941108711 0.997658386 1.028149434 1.013868721 0.932006471 1 20.8549205 -6.261537229 22.92448843 0.997316703 0.941594717 0.243663573 0.044066297 3.979204661 932004.8314 0.01545492 0.014516688 5.48E-07 6.261537229 -0.055721986 DAQHYGGWEHR ddPTM_HeLa_A485_30min_R1 6 DAQHYGGWEHR 11 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ;;;;; ;;;;; 151.7 1.10E-06 3183970000 803144 1049911 1000722 914499 1114082 1076313 1324934 1380978 883023 1240360 FALSE FALSE TRUE 981800.612 1172688.958 1370930.711 964455.7647 1003160.084 1132667.084 1041851.027 1042290.98 1060237.617 931161.0791 1.054383215 1.259383564 1.472280943 1.035756097 1.077321751 1.216402951 1.11887304 1.119345518 1.138618914 1 19.82867123 -5.312161932 24.99999858 1.110454087 1.261754154 0.312757566 0.108800726 443.2908451 218486.9635 0.031013893 0.046001065 4.87E-06 5.312161932 0.151300067 DAQHYGGWEHR ddPTM_HeLa_A486_30min_R1 4 DAQHYGGWEHR 11 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ;;; ;;; 159.5 2.03E-07 2428470000 1017760 1135260 1026330 396464 1401120 1139040 1282430 1191490 1028620 1266450 FALSE FALSE TRUE 946420.2797 1045297.863 1423752.462 922988.2282 1225378.465 998516.8257 961552.4498 920213.737 1117781.61 949322.6768 0.996942665 1.101098592 1.499756086 0.97225975 1.290792367 1.051820261 1.01288263 0.969337149 1.177451711 1 19.85653902 -6.42914494 9.75735752 1.036650884 1.175229778 0.158838212 0.149471382 0.817855305 80.33201849 0.051987317 0.045808013 3.72E-07 6.42914494 0.138578894 DAQRLS(ph)PIPEEVPK ddPTM_HeLa_A485_30min_R1 5 DAQRLSPIPEEVPK 14 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK ;;;; 157.98 5.58E-09 6830993000 7871450 6474510 4742928 11923190 7144030 6771970 10136860 8022070 6340740 14945340 TRUE FALSE FALSE 9622426.896 7231647.624 6497534.437 12574523.68 6432745.289 7126539.878 7971037.05 6054644.754 7613268.357 11219741.79 0.857633543 0.644546707 0.579116219 1.120749828 0.573341652 0.6351786 0.71044746 0.539642076 0.678560033 1 23.41953614 -10.04301344 4.790486012 1.000006812 0.700607967 0.227917671 0.163110388 217911940 16.97176418 18736.26896 0.039208718 9.06E-11 10.04301344 -0.299398844 DAQRLS(ph)PIPEEVPK ddPTM_HeLa_A486_30min_R1 4 DAQRLSPIPEEVPK 14 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK ;;; 222.6 4.34E-28 6385900000 7253000 7016400 3301670 3122130 4976150 7950000 8894200 8152600 5951540 10835300 TRUE FALSE FALSE 6744602.155 6460394.911 4580165.046 7268476.424 4351994.866 6969209.83 6668777.087 6296430.95 6467424.279 8122070.354 0.830404301 0.795412331 0.563915953 0.894904391 0.53582334 0.858058294 0.821068619 0.775224872 0.796277796 1 22.95341609 -9.039855938 0.436750698 1.03519319 0.737444285 0.302039726 0.111542316 5.553432933 1.347027861 0.451931662 0.065931059 9.12E-10 9.039855938 -0.297748905 DAS(ph)DGEDEKPPLPPR ddPTM_HeLa_A485_30min_R1 2 DASDGEDEKPPLPPR 15 1 O15357 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 DAS(1)DGEDEKPPLPPR;DAS(1)DGEDEKPPLPPR ; 126.07 1.25E-05 492990000 454700 300670 187974 688030 303610 317980 515770 375850 213603 929010 TRUE FALSE FALSE 555846.4463 335830.741 257513.4049 725615.3367 273381.5224 334628.9411 405571.526 283672.1982 256471.1628 697424.9042 0.796998276 0.481529608 0.369234599 1.040420743 0.391987038 0.479806412 0.581527163 0.406742284 0.367740184 1 19.41167836 -10.08774483 4.628682751 1.000026829 0.544094317 0.304386407 0.205773598 62711062.73 68336206.46 14333.35445 0.049145395 8.17E-11 10.08774483 -0.455932512 DAS(ph)DGEDEKPPLPPR ddPTM_HeLa_A486_30min_R1 2 DASDGEDEKPPLPPR 15 1 O15357 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 DAS(1)DGEDEKPPLPPR;DAS(1)DGEDEKPPLPPR ; 160.55 3.61E-12 399520000 251650 189520 69769 120840 120850 222650 279920 231650 144670 473210 TRUE FALSE FALSE 234010.6345 174501.745 96785.42528 281321.6269 105691.8661 195181.7067 209881.0553 178908.3519 157210.1121 354715.1359 0.659714263 0.491948968 0.272853948 0.793091691 0.297962662 0.550249163 0.591689032 0.504371914 0.443201026 1 18.43630137 -10.27806187 3.872459502 1.000782005 0.509335746 0.497305714 0.147271881 69586851.4 121196215.8 641037.3363 0.034717659 5.27E-11 10.27806187 -0.491446258 DAS(ph)HSPKGPLAPPESK ddPTM_HeLa_A485_30min_R1 2 DASHSPKGPLAPPESK 16 1 E9PAV3 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form" 1 0 DAS(0.555)HS(0.445)PKGPLAPPESK;DAS(0.521)HS(0.479)PKGPLAPPESK ; 52.298 0.026789 697800000 126117 974650 1086310 68504 648370 598130 307154 519260 593210 80364 TRUE FALSE FALSE 154171.2916 1088626.839 1488181.274 72246.20006 583816.0062 629447.1619 241528.0387 391910.6708 712261.8058 60330.73379 2.555435379 18.04431623 24.66705078 1.197502426 9.676925334 10.43327542 4.003399652 6.496036866 11.80595297 1 15.88060551 -5.277332765 24.999544 6.810371726 15.3844736 0.295021622 6.143014935 1003.793733 1578917.805 1.725524448 2.568774834 5.28E-06 5.277332765 8.57410187 DAS(ph)IPVK ddPTM_HeLa_A485_30min_R1 1 DASIPVK 7 0 G3V3A5 G3V3A5 TTC6 1 0 DAS(1)IPVK 60.59 0.0361 475430000 1027600 672110 443320 1739600 1090400 868530 1666700 1347100 624940 2255000 TRUE FALSE FALSE 1256186.075 750707.4179 607322.5161 1834629.943 981835.9474 914004.8878 1310595.929 1016721.613 750359.7257 1692870 0.74204521 0.443452491 0.358753192 1.083739415 0.579983074 0.539914398 0.774185808 0.600590484 0.443247104 1 20.69103976 -10.27489924 3.977604901 1.000492944 0.619951541 0.250125646 0.198185138 48132802.14 31084739.53 192997.6002 0.047982015 5.31E-11 10.27489924 -0.380541403 DAS(ph)IPVK ddPTM_HeLa_A486_30min_R1 2 DASIPVK 7 0 G3V3A5 G3V3A5 TTC6 1 0 DAS(1)IPVK;DAS(1)IPVK ; 64.42 0.028921 677090000 2291580 2179260 917130 1968470 2111280 3006400 4293600 3820100 1560490 4796200 TRUE FALSE FALSE 2130952.076 2006567.501 1272267.298 4582697.641 1846463.575 2635500.935 3219295.867 2950346.622 1695754.53 3595200.302 0.592721378 0.55812398 0.353879392 1.274671021 0.513591294 0.733060946 0.8954427 0.820634839 0.471671781 1 21.77764072 DAS(ph)PINRWSPT(ph)R ddPTM_HeLa_A486_30min_R1 1 DASPINRWSPTR 12 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 DAS(0.994)PINRWS(0.437)PT(0.569)R 100.6 0.016886 600100000 576990 682970 439430 252920 618110 654410 739690 686250 488360 745210 TRUE FALSE FALSE 536545.9806 628848.9699 609589.0643 588810.5419 540580.8802 573675.5478 554611.7384 530005.8557 530691.438 558604.5655 0.96051127 1.125749786 1.091271182 1.054073988 0.967734447 1.026979698 0.99285214 0.948803301 0.950030613 1 19.09146784 -5.698590098 5.49482358 0.981404171 1.066510991 0.408374974 0.044963557 0.191493602 11.19973327 0.013541189 0.017381435 2.00E-06 5.698590098 0.08510682 DAS(ph)PSKEER ddPTM_HeLa_A485_30min_R1 3 DASPSKEER 9 1 Q9BUQ8;F8W1J5;F8VVA2;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 DAS(0.995)PS(0.005)KEER;DAS(0.608)PS(0.392)KEER;DAS(0.908)PS(0.092)KEER ;; 139.29 0.0001398 7663600000 4294070 3122040 1232170 9041720 1789881 4753130 4173220 5960280 3049030 9191170 TRUE FALSE FALSE 5249271.057 3487135.42 1688000.958 9535646.269 1611674.163 5001996.537 3281577.455 4498511.985 3660942.354 6899980.47 0.760766075 0.505383375 0.244638512 1.381981632 0.233576627 0.724929086 0.475592282 0.651960104 0.530572857 1 22.71816085 -10.3309393 3.745023125 1.001216532 0.610184214 0.125378748 0.307270381 401424552 572253341.6 5277812.439 0.072375977 4.67E-11 10.3309393 -0.391032318 DAS(ph)PSKEER ddPTM_HeLa_A486_30min_R1 3 DASPSKEER 9 1 Q9BUQ8;F8W1J5;F8VVA2;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 DAS(0.968)PS(0.032)KEER;DAS(0.963)PS(0.037)KEER;DAS(0.971)PS(0.029)KEER ;; 153.74 2.45E-05 3322870000 4193720 1302160 2320320 2659520 1265370 8732330 3333920 3032330 5407190 7743430 TRUE FALSE FALSE 3899761.884 1198972.099 3218810.044 6191496.965 1106655.495 7655023.908 2499737.953 2341934.654 5875889.583 5804424.727 0.671860187 0.206561745 0.554544196 1.066685719 0.190657222 1.318825598 0.430660758 0.403474033 1.012312134 1 22.46872166 -7.877794456 0.077368654 1.531605132 2.70E-12 0.124691259 0.348581933 48.96350335 2.91363075 29.73054624 25.47301486 1.32E-08 7.877794456 -1.531605132 DAS(ph)SPVPPPHVPPPVPPLRPR ddPTM_HeLa_A485_30min_R1 3 DASSPVPPPHVPPPVPPLRPR 21 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-6;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DAS(0.5)S(0.5)PVPPPHVPPPVPPLRPR;DAS(0.5)S(0.5)PVPPPHVPPPVPPLRPR;DAS(0.55)S(0.45)PVPPPHVPPPVPPLRPR ;; 95.122 0.0003755 1239870000 332570 538460 464290 419810 561230 454390 539740 583370 419500 550690 TRUE FALSE FALSE 406549.0491 601428.213 636050.1917 442743.1573 505351.9706 478181.1578 424420.1397 440297.5928 503689.8021 413413.1177 0.983396587 1.454787445 1.538534131 1.070946079 1.222389781 1.15666663 1.026624753 1.065030532 1.218369182 1 18.65722464 -5.291485206 24.98519158 1.114616339 1.338494262 0.299943166 0.151336615 799.5563209 664884.907 0.042709644 0.06335762 5.11E-06 5.291485206 0.223877923 DAS(ph)SPVPPPHVPPPVPPLRPR ddPTM_HeLa_A486_30min_R1 3 DASSPVPPPHVPPPVPPLRPR 21 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-6;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DAS(0.533)S(0.467)PVPPPHVPPPVPPLRPR;DAS(0.535)S(0.465)PVPPPHVPPPVPPLRPR;DAS(0.555)S(0.445)PVPPPHVPPPVPPLRPR ;; 99.923 0.00021252 1095510000 418725 428517 307616 151947 447097 441765 501680 464260 351165 544370 TRUE FALSE FALSE 389374.5398 394559.7523 426733.1534 353740.295 391017.9252 387264.5258 376154.3578 358558.1327 381604.2649 408056.2087 0.954217903 0.966925006 1.04577052 0.866891098 0.958245254 0.949047012 0.921819959 0.878697898 0.935175735 1 18.63840837 -5.261055634 24.99999946 0.926560043 0.986766526 0.288472919 0.04217284 42.86575522 2792519.154 0.011424459 0.01830725 5.48E-06 5.261055634 0.060206483 DASLHGLSQYNS(ph)L ddPTM_HeLa_A485_30min_R1 2 DASLHGLSQYNSL 13 0 Q9Y4B5-4 Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 DASLHGLS(0.002)QY(0.026)NS(0.972)L;DASLHGLS(0.003)QY(0.056)NS(0.94)L ; 59.673 0.031116 172345000 175622 268460 278750 129706 304550 232200 255130 258820 213140 199813 TRUE FALSE FALSE 214688.508 299854.0617 381871.2248 136791.5103 274227.9327 244357.633 200619.3913 195343.9892 255915.243 150003.2964 1.431225268 1.998983149 2.54575222 0.911923362 1.828146043 1.629015087 1.337433217 1.302264643 1.706064127 1 17.19463468 -7.254195559 0.176448631 0.794122522 2.155199715 0.220853713 0.407163342 5.383513249 0.942783967 2.7617984 3.150157487 5.57E-08 7.254195559 1.361077194 DASPS(ph)KEER ddPTM_HeLa_A485_30min_R1 4 DASPSKEER 9 1 Q9BUQ8;F8W1J5;F8VVA2;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 DAS(0.194)PS(0.806)KEER;DAS(0.029)PS(0.971)KEER;DAS(0.148)PS(0.852)KEER;DAS(0.111)PS(0.889)KEER ;;; 120.87 0.00020412 1047064000 1314316 944906 382278 2687300 532871 1404237 1173428 1738060 921718 2664370 TRUE FALSE FALSE 1606681.06 1055404.537 523698.5401 2834100.394 479816.4922 1477760.678 922715.5218 1311798.06 1106698.348 2000191.593 0.80326358 0.527651721 0.261824188 1.416914462 0.239885266 0.738809564 0.461313569 0.655836203 0.55329617 1 20.93170677 -10.6470925 2.368941183 1.0545726 0.625841724 0.11084609 0.315338045 9925154.887 7592358.425 3291486.323 0.077670775 2.25E-11 10.6470925 -0.428730876 DASPS(ph)KEER ddPTM_HeLa_A486_30min_R1 3 DASPSKEER 9 1 Q9BUQ8;F8W1J5;F8VVA2;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 DAS(0.309)PS(0.691)KEER;DAS(0.159)PS(0.841)KEER;DAS(0.229)PS(0.771)KEER ;; 157.03 1.51E-05 423950000 939570 322324 537757 597272 285721 2126580 792500 749220 1288290 1892820 TRUE FALSE FALSE 873710.9949 296781.8724 745990.912 1390479.4 249883.2079 1864224.181 594208.1178 578638.9614 1399960.014 1418845.552 0.615790065 0.209171373 0.525773162 0.980007583 0.176117272 1.313902122 0.418796899 0.407823784 0.986689505 1 20.43628612 -6.940089362 0.095438233 1.372094372 9.34E-12 0.154913225 0.335424133 29.1685551 2.081233938 12.56849094 15.50491133 1.15E-07 6.940089362 -1.372094372 DASS(ph)PVPPPHVPPPVPPLRPR ddPTM_HeLa_A485_30min_R1 1 DASSPVPPPHVPPPVPPLRPR 21 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-6;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DAS(0.249)S(0.751)PVPPPHVPPPVPPLRPR 61.985 0.0008316 0 74131 82352 71949 81435 93553 86946 92855 95947 66849 122980 TRUE FALSE FALSE 90621.1852 91982.35003 98565.92915 85883.58785 84238.53484 91498.35812 73015.77069 72415.84781 80264.98112 92323.34928 0.981563016 0.996306468 1.06761648 0.930247749 0.912429364 0.991064111 0.790870037 0.784371975 0.869389832 1 16.49440794 -6.096673938 1.104872265 0.853831854 1.006946605 0.353692271 0.071505975 0.479480959 1.233685133 0.035712446 0.037736976 8.00E-07 6.096673938 0.153114751 DASSGKENRS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 DASSGKENRSPSR 13 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 DAS(0.009)S(0.021)GKENRS(0.914)PS(0.056)R 76.574 0.0051487 63450000 55514 50356 17122 117690 25089 73964 44774 62622 62930 113050 TRUE FALSE FALSE 67862.89778 56244.69616 23456.14031 124119.1067 22591.05107 77836.64067 35207.66913 47263.85631 75559.47377 84868.71553 0.799622067 0.662725903 0.276381469 1.462483624 0.266188205 0.917141731 0.414848615 0.556905522 0.89031009 1 16.37294522 -7.935868998 5.232075018 0.998248001 0.669835329 0.103319956 0.33202285 0.393624981 19.34553485 0.300482942 0.078282268 1.16E-08 7.935868998 -0.328412672 DASSGKENRS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 DASSGKENRSPSR 13 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 DASSGKENRS(0.996)PS(0.003)R 83.966 0.0013679 40770000 38264 13906 33070 13462 23416 78556 31530 28554 56059 50149 TRUE FALSE FALSE 35581.8912 12804.03792 45875.58965 31340.21633 20478.94693 68864.55942 23640.86051 22052.87753 60918.23926 37591.36398 0.946544297 0.340611155 1.220375767 0.833707879 0.544777969 1.831924999 0.628890735 0.586647442 1.620538145 1 15.19811364 DASSS(ph)PASTASSASSTSLK ddPTM_HeLa_A485_30min_R1 2 DASSSPASTASSASSTSLK 19 0 A0A669KBK8;Q04724 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 DAS(0.003)S(0.027)S(0.97)PASTASSASSTSLK;DASSS(0.998)PAS(0.002)TASSASSTSLK ; 313.51 1.44E-89 391800000 428230 424160 310280 583570 542850 514990 730090 737100 422230 758450 TRUE FALSE FALSE 523488.2861 473761.8223 425065.4838 615448.9514 488801.9479 541954.0801 574100.3072 556325.0693 506967.6881 569382.3732 0.91939672 0.832062678 0.746537834 1.080906225 0.858477485 0.95182799 1.008286056 0.977067601 0.890381775 1 19.11903831 -5.252533693 24.94865685 0.96235419 0.832605445 0.4350722 0.069871226 615.8368163 1725220.031 0.018676428 0.031754272 5.59E-06 5.252533693 -0.129748745 DASSS(ph)PASTASSASSTSLK ddPTM_HeLa_A486_30min_R1 1 DASSSPASTASSASSTSLK 19 0 A0A669KBK8;Q04724 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 DASSS(0.961)PAS(0.036)T(0.002)ASSASSTSLK 295.82 5.17E-79 214700000 347360 342070 172460 125310 324560 338980 405330 383430 244390 432630 TRUE FALSE FALSE 323011.8578 314963.1274 239241.1306 291728.0128 283850.6584 297160.0941 303912.1469 296131.3592 265573.922 324296.6321 0.996038274 0.971219237 0.737723143 0.899571516 0.875280932 0.916321863 0.93714247 0.91314966 0.818922849 1 18.30695452 -6.288299501 22.51578635 0.912931419 0.891556281 0.015756602 0.076336562 1397.238555 1171241.184 0.027841548 0.024564307 5.15E-07 6.288299501 -0.021375138 DASSSPAS(ph)TASSASSTSLK ddPTM_HeLa_A486_30min_R1 1 DASSSPASTASSASSTSLK 19 0 A0A669KBK8;Q04724 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 DAS(0.003)S(0.024)S(0.183)PAS(0.46)T(0.084)AS(0.207)S(0.037)AS(0.001)STSLK 100.22 0.00023566 205220000 231440 223220 129010 94724 224210 231130 291760 274350 187190 281740 TRUE FALSE FALSE 215217.2512 205531.2342 178966.127 220522.2591 196087.4911 202615.5306 218758.5621 211886.494 203415.7799 211190.4702 1.019067058 0.973203166 0.847415733 1.0441866 0.928486456 0.959397128 1.035835385 1.003295716 0.963186358 1 17.68818521 -6.714675915 22.89748878 1.000853989 0.95947987 0.115671589 0.052040756 112.1564343 54915.8797 0.019716525 0.015272235 1.93E-07 6.714675915 -0.041374119 DASVPLIDVTNLPT(ph)PR ddPTM_HeLa_A485_30min_R1 3 DASVPLIDVTNLPTPR 16 0 Q96A65-2;Q96A65 Q96A65-2 EXOC4 Exocyst complex component 4 1 0 DASVPLIDVT(0.001)NLPT(0.999)PR;DASVPLIDVTNLPT(1)PR;DASVPLIDVTNLPT(1)PR ;; 151.8 2.08E-07 267648000 200435 236513 221733 199844 314906 228871 293018 292791 190338 282532 TRUE FALSE FALSE 245021.0743 264171.138 303761.2638 210760.9717 283552.8529 240854.3317 230412.3106 220983.5482 228537.0907 212101.972 1.155204131 1.245491192 1.432147287 0.993677568 1.336870422 1.135559134 1.086327998 1.041874086 1.077486874 1 17.69439851 -6.613084425 2.693878179 1.051221349 1.232095497 0.377333489 0.109288524 0.303209337 4.460365849 0.045675176 0.033892431 2.44E-07 6.613084425 0.180874148 DASVPLIDVTNLPT(ph)PR ddPTM_HeLa_A486_30min_R1 3 DASVPLIDVTNLPTPR 16 0 Q96A65-2;Q96A65 Q96A65-2 EXOC4 Exocyst complex component 4 1 0 DASVPLIDVT(0.002)NLPT(0.998)PR;DASVPLIDVTNLPT(1)PR;DASVPLIDVT(0.003)NLPT(0.997)PR ;; 195.17 6.55E-18 276145000 136883 147756 113888 56444 152926 125621 155553 146829 115520 133575 TRUE FALSE FALSE 127288.2086 136047.2764 157988.4836 131404.4845 133744.5951 110123.1582 116631.9941 113399.242 125533.3666 100126.9506 1.271268203 1.358747826 1.577881706 1.312378773 1.335750208 1.099835335 1.164841169 1.132554635 1.253742033 1 16.61147082 -6.104446829 2.747745423 1.139913537 1.391312716 0.608060658 0.096406307 0.198507924 2.914923232 0.034391557 0.035127994 7.86E-07 6.104446829 0.25139918 DAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_A485_30min_R1 1 DATPPVSPINMEDQER 16 0 P17275 P17275 JUNB Transcription factor jun-B 2 0 DAT(1)PPVS(1)PINMEDQER 197.38 1.22E-24 344540000 98719 148970 142060 184000 153710 107070 147920 152280 126330 193430 TRUE FALSE FALSE 120678.701 166390.7456 194613.9056 194051.4541 138406.0927 112676.0196 116315.6836 114933.0912 151683.2722 145211.4608 0.831054934 1.145851331 1.34021037 1.336337043 0.953134773 0.775944399 0.801008977 0.791487742 1.044568186 1 17.1477958 -5.939529446 6.715617947 0.864334899 1.173468186 0.421949416 0.155089413 0.196873147 17.18116633 0.050752115 0.057550046 1.15E-06 5.939529446 0.309133287 DAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_A486_30min_R1 2 DATPPVSPINMEDQER 16 0 P17275 P17275 JUNB Transcription factor jun-B 2 0 DAT(1)PPVS(1)PINMEDQER;DAT(1)PPVS(1)PINMEDQER ; 257.37 3.69E-50 429420000 204760 254370 159859 120917 224388 235849 317180 302060 195377 351310 TRUE FALSE FALSE 190407.3814 234212.7948 221760.686 281500.8868 196243.1647 206752.3483 237818.2092 233287.5319 212312.4357 263339.6894 0.723048553 0.889394209 0.842108861 1.068964908 0.745209221 0.78511655 0.903085326 0.885880638 0.806230296 1 18.00656545 -11.34606272 2.133698696 1.794570513 0.854908099 0.187113722 0.093335391 7640734.822 738287.6542 29374721.9 0.023684162 4.51E-12 11.34606272 -0.939662415 DATNRS(ph)PTQIVK ddPTM_HeLa_A485_30min_R1 2 DATNRSPTQIVK 12 1 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 DAT(0.104)NRS(0.893)PT(0.003)QIVK;DAT(0.17)NRS(0.819)PT(0.011)QIVK ; 99.238 0.00056546 791630000 398640 389970 323390 489090 496580 457010 613630 658170 378810 651060 TRUE FALSE FALSE 487316.0927 435573.5992 443025.4184 515807.7483 447138.7516 480938.3369 482522.9376 496752.7755 454833.6923 488762.7239 0.997040218 0.89117598 0.906422271 1.055333648 0.914838079 0.983991441 0.987233506 1.016347506 0.930581794 1 18.89877473 -5.194203675 24.99995346 0.981975695 0.927509106 0.216450339 0.045461571 268.061978 99671.23456 0.011780613 0.020404618 6.39E-06 5.194203675 -0.054466589 DATNRS(ph)PTQIVK ddPTM_HeLa_A486_30min_R1 2 DATNRSPTQIVK 12 1 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 DAT(0.029)NRS(0.97)PTQIVK;DAT(0.254)NRS(0.737)PT(0.009)QIVK ; 112.24 0.00017701 346062000 366070 326120 219346 139631 360190 359210 406180 412420 270352 461560 TRUE FALSE FALSE 340410.3834 300277.0635 304282.6455 325068.0246 315011.6116 314894.3224 304549.4679 318520.9691 293786.329 345982.3717 0.983895167 0.867897003 0.879474419 0.93955083 0.910484572 0.910145568 0.880245622 0.92062774 0.849136699 1 18.40033901 -6.538134277 24.70283949 0.904360661 0.912572928 0 0.046854244 2046.751368 3314223.261 0.017000124 0.013175332 2.90E-07 6.538134277 0.008212267 DATNVGDEGGFAPNILENK ddPTM_HeLa_A485_30min_R1 2 DATNVGDEGGFAPNILENK 19 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 390.71 6.68E-164 87460000 127991 100033 80851 183456 136827 123607 176856 126427 112881 259800 FALSE FALSE TRUE 156462.1564 111730.9892 110761.1494 193477.7367 123204.0235 130078.8714 139069.2708 95420.58002 135535.1813 195036.6413 0.802219293 0.572871787 0.567899184 0.99200712 0.631696807 0.666945814 0.713041764 0.489244377 0.694921633 1 17.57338566 -11.06184645 2.683907791 1.473005036 0.677242652 0.340781937 0.132914644 41630193.69 19808136.22 120384192.5 0.033551294 8.67E-12 11.06184645 -0.795762384 DATNVGDEGGFAPNILENK ddPTM_HeLa_A486_30min_R1 2 DATNVGDEGGFAPNILENK 19 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 195.38 8.84E-21 72536000 151933 165653 103348 74562 316440 194039 195234 175998 132367 184450 FALSE FALSE TRUE 141283.2813 152526.053 143367.1134 173584.1042 276749.1445 170100.441 146384.3882 135927.0974 143840.6781 138262.5194 1.021848017 1.103162691 1.036919578 1.255467533 2.001620871 1.230271528 1.058742375 0.983108784 1.040344692 1 17.07705059 -6.754198093 4.611884545 1.015045078 1.290651339 0.186932286 0.261272176 0.370864196 19.6482786 0.119965635 0.085685581 1.76E-07 6.754198093 0.275606261 DATNVGDEGGFAPNILENKEGLELLK ddPTM_HeLa_A485_30min_R1 2 DATNVGDEGGFAPNILENKEGLELLK 26 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 186.3 7.34E-28 56164000 21628.1 20603.4 11709 24996 33307 34592 56957 65179 21497.8 42814 FALSE FALSE TRUE 26439.19623 23012.7884 16040.64635 26361.46819 29990.83813 36403.18363 44787.67165 49193.74805 25812.21127 32141.25773 0.822593703 0.715989044 0.499067164 0.820175377 0.933094728 1.132599848 1.393463567 1.530548321 0.803086534 1 14.97213876 -6.010957499 1.855673709 1.225301263 0.6881472 0.52532783 0.204418016 0.252495959 1.752421366 0.077472566 0.084612681 9.75E-07 6.010957499 -0.537154063 DAVLLVFANK ddPTM_HeLa_A486_30min_R1 1 DAVLLVFANK 10 0 P84077;P61204;C9J1Z8;F5H423;P61204-2;P84085 P84077 ARF1;ARF3;ARF5 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5 0 0 183.65 5.41E-09 13356000 37571 39844 25696 16810 34388 43080 44388 38527 37607 49183 FALSE FALSE TRUE 34937.46692 36686.61633 35646.17936 39134.52953 30074.73638 37765.22761 33281.65291 29755.24314 40866.80504 36867.25667 0.947655727 0.99510025 0.966879084 1.06149828 0.815757371 1.024356869 0.902742865 0.807091328 1.108485109 1 15.17005245 -5.712739835 24.9999998 0.935472516 0.991098296 0.064128258 0.090182259 308.5754492 158406.1075 0.025406124 0.0327991 1.94E-06 5.712739835 0.05562578 DAVS(ph)SPQKR ddPTM_HeLa_A485_30min_R1 1 DAVSSPQKR 9 1 O00472;D6RC27 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 DAVS(0.561)S(0.439)PQKR 60.255 0.01833 519710000 397750 376190 232920 551860 452440 410420 548390 599990 336860 654340 TRUE FALSE FALSE 486228.1153 420182.1481 319086.8006 582006.7144 407393.485 431908.9566 431221.9966 452841.5118 404464.7121 491225.0802 0.989827545 0.855376008 0.649573512 1.184806594 0.829341785 0.879248585 0.877850122 0.921861546 0.823379604 1 18.9060247 -10.2957735 3.0493001 1.000785301 0.889172178 0.061620568 0.128563025 44622642.36 57114875.79 320354.0808 0.032916692 5.06E-11 10.2957735 -0.111613123 DAVS(ph)SPQKR ddPTM_HeLa_A486_30min_R1 2 DAVSSPQKR 9 1 O00472;D6RC27 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 DAVS(0.566)S(0.434)PQKR;DAVS(0.571)S(0.429)PQKR ; 67.08 0.01018 578690000 629440 503480 342530 304470 533630 698770 813520 695050 496950 890840 TRUE FALSE FALSE 585319.5064 463582.4112 475166.7893 708821.5471 466697.1495 612562.862 609968.6915 536802.2878 540026.0261 667767.8656 0.876531406 0.694226894 0.711574806 1.061478971 0.698891297 0.91732905 0.913444212 0.803875591 0.808703224 1 19.34898714 -14 0.12992629 1.522149393 0.765284139 0.170322286 0.110271179 266.9544562 2.185473721 36.92472545 0.842971469 1.00E-14 14 -0.756865253 DAVSS(ph)PQKR ddPTM_HeLa_A485_30min_R1 3 DAVSSPQKR 9 1 O00472;D6RC27 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 DAVS(0.242)S(0.758)PQKR;DAVS(0.153)S(0.847)PQKR;DAVS(0.25)S(0.75)PQKR ;; 90.614 0.0020342 2534578000 2125012 1909083 1252597 3041245 2350294 2072302 3449715 3210980 1890984 3923535 TRUE FALSE FALSE 2597713.588 2132333.65 1715984.755 3207380.514 2116290.477 2180804.528 2712655.209 2423482.12 2270487.144 2945469.932 0.881935191 0.723936655 0.582584374 1.088919795 0.718489927 0.740392731 0.920958377 0.822782842 0.770840374 1 21.49006639 -13.99999999 0.215841241 1.960944472 0.778781914 0.164174451 0.130306006 277.8248643 2.777098773 115.953461 0.260580567 1.00E-14 13.99999999 -1.182162557 DAVSS(ph)PQKR ddPTM_HeLa_A486_30min_R1 3 DAVSSPQKR 9 1 O00472;D6RC27 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 DAVS(0.216)S(0.784)PQKR;DAVS(0.17)S(0.83)PQKR;DAVS(0.392)S(0.608)PQKR ;; 105.03 0.00069227 3244420000 1673540 1284950 855520 852800 1252780 1959690 2182470 1902290 1328050 2394700 TRUE FALSE FALSE 1556233.488 1183125.882 1186800.256 1985361.498 1095644.651 1717923.372 1636392.922 1469180.094 1443166.443 1795051.533 0.866957555 0.659104132 0.661151078 1.106019221 0.610369469 0.957032899 0.911613339 0.818461234 0.803969366 1 20.77559383 -12.59879781 0.026668916 2.053682552 3.24E-06 0.136597391 0.142478542 2835.211334 7.258409265 381.3906689 202.458637 2.52E-13 12.59879781 -2.053679316 DAVTYTEHAK ddPTM_HeLa_A485_30min_R1 2 DAVTYTEHAK 10 0 P62805 P62805 HIST1H4A Histone H4 0 0 ; ; 148.56 0.00018535 36342000 70993 69093 65060 111101 100615 65295 107721 137810 96418 237610 FALSE FALSE TRUE 86785.14793 77172.82532 89128.40137 117170.1663 90597.41732 68713.74523 84705.52835 104011.8814 115768.2082 178378.1999 0.486523286 0.432635969 0.49965972 0.656863711 0.50789512 0.385213806 0.474864801 0.583097494 0.649004241 1 17.44457978 -8.205449123 1.335621956 0.99882098 0.494283801 0.835448348 0.067469479 0.314802564 1.079797757 0.070785904 0.021240523 6.23E-09 8.205449123 -0.504537179 down DAVTYTEHAK ddPTM_HeLa_A486_30min_R1 1 DAVTYTEHAK 10 0 P62805 P62805 HIST1H4A Histone H4 0 0 155.11 7.60E-06 304240000 275350 272670 182620 88179 888670 290540 365600 347830 248450 243750 FALSE FALSE TRUE 256049.3869 251062.6362 253335.3547 205285.1683 777204.7221 254696.1288 274123.0131 268636.7021 269985.846 182713.4135 1.401371591 1.374078845 1.386517552 1.123536387 4.253681804 1.393965139 1.500289486 1.470262621 1.477646556 1 17.47922302 DAWRRR ddPTM_HeLa_A486_30min_R1 1 DAWRRR 6 2 A0A2R8Y5I4;Q6ZVD7-3;Q6ZVD7-2;Q6ZVD7 A0A2R8Y5I4 STOX1 Storkhead-box protein 1 0 0 58.551 0.033476 106980000 124010 120970 98557 36181 152660 127650 136810 134020 113020 142700 FALSE FALSE TRUE 115317.5394 111383.8966 136720.9098 84231.19649 133511.9593 111901.8409 102578.691 103506.5716 122816.6646 106966.9912 1.07806659 1.041292229 1.278159817 0.787450367 1.24816037 1.046134323 0.958975193 0.967649651 1.1481735 1 16.70680614 -6.519490525 24.79284131 1.014082434 1.085029256 0.05451154 0.13334066 411.6002608 3011884.289 0.048182347 0.038120875 3.02E-07 6.519490525 0.070946822 DCCVEPGTELS(ph)PTLPHQL ddPTM_HeLa_A486_30min_R1 1 DCCVEPGTELSPTLPHQL 18 0 Q14012 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 1 0 DCCVEPGT(0.089)ELS(0.877)PT(0.034)LPHQL 73.834 0.0010982 0 33182 66185 56928 13662 67431 48969 56762 49652 39055 46773 TRUE FALSE FALSE 30856.11315 60940.25956 78972.04618 31805.82644 58973.17521 42927.70266 42559.54723 38347.3235 42440.31885 35060.73636 0.880076015 1.738134046 2.25243547 0.907163675 1.682028997 1.224381092 1.213880587 1.093739821 1.210479963 1 15.09756868 -6.44883494 1.050909613 1.098354006 1.547126265 0.16347766 0.379901125 0.926342795 2.116066133 0.232358133 0.175966713 3.56E-07 6.44883494 0.448772258 DCDPGS(ph)PR ddPTM_HeLa_A485_30min_R1 5 DCDPGSPR 8 0 Q00341;Q00341-2;A0A024R4E5;H0Y394 Q00341 HDLBP Vigilin 1 0 DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR ;;;; 187.97 5.37E-06 29434340000 13236250 14769500 13032680 16875370 17689200 13623160 18631450 19472440 15145490 21028830 TRUE FALSE FALSE 16180608.15 16496664.55 17854010.67 17797228.73 15928001.14 14336447.59 14650688.5 14696793.56 18185050.92 15786729.69 1.024949972 1.044970356 1.130950553 1.127353739 1.008948747 0.908132835 0.928038219 0.930958713 1.15192008 1 23.912209 -5.942037686 6.305502859 0.974110717 1.082109946 0.299436472 0.07052232 0.243051138 19.60384714 0.022780532 0.025811602 1.14E-06 5.942037686 0.107999229 DCDPGS(ph)PR ddPTM_HeLa_A486_30min_R1 6 DCDPGSPR 8 0 Q00341;Q00341-2;A0A024R4E5;H0Y394 Q00341 HDLBP Vigilin 1 0 DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR;DCDPGS(1)PR ;;;;; 169.93 2.45E-05 37391300000 16925990 16937200 15430830 7031240 18506640 20608420 21037670 19599270 17741270 20512030 TRUE FALSE FALSE 15739565.51 15595034.59 21406060.63 16369082.06 16185364.64 18065962.67 15773822.45 15136944.07 19279097.57 15375684.18 1.023666025 1.014266059 1.392202154 1.064608369 1.052659801 1.174969677 1.02589402 0.984472879 1.253869249 1 23.87414727 -6.769948915 24.9361664 1.064765124 1.122311485 0.044060248 0.123738562 699.9625375 2051130.912 0.05181592 0.035566755 1.70E-07 6.769948915 0.057546361 DCDPGS(ph)PRR ddPTM_HeLa_A486_30min_R1 1 DCDPGSPRR 9 1 Q00341;Q00341-2;A0A024R4E5;H0Y394 Q00341 HDLBP Vigilin 1 0 DCDPGS(1)PRR 80.24 0.021547 929390000 784520 870800 768090 389130 1088700 883210 1088500 1071600 738620 925410 TRUE FALSE FALSE 729529.1993 801794.6366 1065515.018 905914.3055 952145.0943 774248.53 816145.787 827620.0729 802644.1763 693681.3126 1.051677746 1.155854457 1.536029584 1.305951723 1.372597296 1.116144425 1.176542848 1.193083997 1.15707914 1 19.40391349 -6.27441442 24.75361238 1.143636122 1.292453789 0.26116974 0.129484602 1099.542662 2097686.478 0.048035511 0.042625948 5.32E-07 6.27441442 0.148817667 DCGATWVVLGHSER ddPTM_HeLa_A485_30min_R1 5 DCGATWVVLGHSER 14 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3;U3KPS5 P60174 TPI1 Triosephosphate isomerase 0 0 ;;;; ;;;; 225.32 2.04E-22 1848472000 1339693 1587528 1443282 1177770 1965781 1330101 1502247 1477804 1157794 1440510 FALSE FALSE TRUE 1637703.086 1773175.59 1977212.072 1242108.593 1770060.941 1399743.032 1181279.656 1115370.252 1390152.636 1081417.368 1.514404276 1.639677374 1.82835243 1.148593161 1.63679722 1.294359674 1.092343892 1.031396652 1.285491317 1 20.044492 -6.265820493 0.841409379 1.072178284 1.62505676 0.584057682 0.177814153 0.435109613 0.666372414 0.11505244 0.107822721 5.42E-07 6.265820493 0.552878476 DCGATWVVLGHSER ddPTM_HeLa_A486_30min_R1 6 DCGATWVVLGHSER 14 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3;U3KPS5 P60174 TPI1 Triosephosphate isomerase 0 0 ;;;;; ;;;;; 227.42 1.79E-27 1884185000 1531376 1657149 1401292 560241 2107237 1595044 1762884 1825837 1525436 1787722 FALSE FALSE TRUE 1424034.45 1525830.478 1943909.79 1304269.361 1842927.686 1398263.688 1321791.777 1410133.773 1657662.021 1340064.775 1.062660908 1.138624421 1.450608826 0.973288296 1.37525269 1.043429926 0.986364094 1.052287769 1.237001413 1 20.35387131 DCHLAQVPS(ph)HTVVAR ddPTM_HeLa_A486_30min_R1 1 DCHLAQVPSHTVVAR 15 0 P02787 P02787 TF Serotransferrin 1 0 DCHLAQVPS(0.5)HT(0.5)VVAR 53.001 0.030943 300360000 56073 107370 295490 7478.2 187510 28638 51378 57065 99624 14602 TRUE FALSE FALSE 52142.57226 98861.61017 409911.6415 17409.62753 163990.7473 25104.93473 38522.68098 44072.54522 108259.4885 10945.56416 4.763808563 9.032116458 37.4500241 1.59056466 14.98239332 2.293617247 3.519478798 4.026521117 9.89071801 1 13.4180587 -5.893749352 1.702496444 4.541537768 15.37643448 0.185958281 9.386658484 0.611840177 3.646197186 3.523062379 4.228305941 1.28E-06 5.893749352 10.83489671 DCLIEDS(ph)DDEAGQS ddPTM_HeLa_A485_30min_R1 2 DCLIEDSDDEAGQS 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;H3BPG4 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 DCLIEDS(1)DDEAGQS;DCLIEDS(1)DDEAGQS ; 253.13 1.73E-41 590990000 496720 502600 512970 557300 712670 476400 697400 671550 485870 725430 TRUE FALSE FALSE 607213.6503 561374.698 702738.9495 587743.8878 641714.0725 501343.5673 548394.7928 506851.3096 583379.6523 544593.6515 1.114984812 1.030813885 1.290391372 1.079233822 1.178335573 0.920582834 1.006979775 0.930696324 1.071220075 1 19.05482064 -6.256510558 24.99482992 0.982882069 1.137873196 0.512100517 0.074568781 337.5818342 1711930.846 0.024214255 0.023498672 5.54E-07 6.256510558 0.154991127 DCLIEDS(ph)DDEAGQS ddPTM_HeLa_A486_30min_R1 2 DCLIEDSDDEAGQS 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;H3BPG4 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 DCLIEDS(1)DDEAGQS;DCLIEDS(1)DDEAGQS ; 176.89 8.29E-12 425360000 549750 703910 575530 252370 757610 645480 752720 832050 570030 718790 TRUE FALSE FALSE 511215.3639 648129.608 798390.6292 587530.1141 662583.4894 565847.2404 564381.4945 642610.3785 619440.6594 538800.3055 0.948803033 1.202912473 1.481793201 1.090441316 1.229738518 1.05019844 1.047478052 1.19266892 1.149666496 1 19.03939114 -6.254730034 24.54963927 1.097511419 1.202011814 0.122255028 0.134772144 972.3791226 3557954.835 0.046335876 0.045281603 5.56E-07 6.254730034 0.104500395 DCLNVLNKS(ph)NEGK ddPTM_HeLa_A485_30min_R1 2 DCLNVLNKSNEGK 13 1 Q99471 Q99471 PFDN5 Prefoldin subunit 5 1 0 DCLNVLNKS(1)NEGK;DCLNVLNKS(1)NEGK ; 128.26 4.22E-05 156420000 359310 236510 155580 647260 349910 327280 530730 437640 245560 818870 TRUE FALSE FALSE 439237.2699 264167.7871 213135.5162 682618.1749 315071.7318 344415.8747 417335.1998 330308.1038 294841.6396 614740.7792 0.714508106 0.429722244 0.346707951 1.110416289 0.512527788 0.560261961 0.678879967 0.537312824 0.479619458 1 19.22961866 -10.15563001 4.092744654 1.000128559 0.5966382 0.267678497 0.200140374 271369639.8 874901224.8 600229.9935 0.049771952 6.99E-11 10.15563001 -0.403490359 DCLNVLNKS(ph)NEGK ddPTM_HeLa_A486_30min_R1 1 DCLNVLNKSNEGK 13 1 Q99471 Q99471 PFDN5 Prefoldin subunit 5 1 0 DCLNVLNKS(1)NEGK 97.235 0.00050183 202030000 173790 171860 69684 211080 143480 260970 334760 281950 145020 397980 TRUE FALSE FALSE 161608.2185 158241.1877 96667.511 491404.9074 125483.4005 228774.1747 250999.5073 217756.1399 157590.4504 298323.2176 0.541721894 0.530435375 0.324036164 1.647223141 0.420629013 0.766866812 0.841367659 0.729933599 0.528254058 1 18.18651674 DCRT(ph)PLGAS(ph)LDEQSSSTLK ddPTM_HeLa_A485_30min_R1 1 DCRTPLGASLDEQSSSTLK 19 1 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 2 0 DCRT(1)PLGAS(0.977)LDEQS(0.006)S(0.007)S(0.007)T(0.003)LK 52.773 0.012005 0 67403 90965 98195 91880 120520 108930 170550 182160 157480 183670 TRUE FALSE FALSE 82396.56481 101602.5655 134521.4167 96899.17175 108520.6056 114633.4064 134110.5992 137484.9744 189084.7915 137884.4492 0.597576923 0.736867472 0.975609777 0.702756346 0.787040208 0.831372987 0.972630344 0.997102829 1.371327895 1 17.07310023 -7.053363048 1.431285911 1.166114634 0.768065705 0.613830958 0.128402215 0.29016065 1.124000566 0.091873926 0.041571456 8.84E-08 7.053363048 -0.398048929 DCRT(ph)PLGAS(ph)LDEQSSSTLK ddPTM_HeLa_A486_30min_R1 1 DCRTPLGASLDEQSSSTLK 19 1 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 2 0 DCRT(1)PLGAS(1)LDEQSSSTLK 100.7 0.00018872 111920000 69741 90348 55915 39363 98567 133170 164810 194890 91538 154950 TRUE FALSE FALSE 64852.51604 83188.49544 77566.78546 91639.0533 86203.80776 116740.8394 123572.7948 150517.8014 99472.58754 116149.5114 0.558353757 0.716219073 0.667818439 0.788974935 0.742179685 1.005091093 1.063911447 1.295896983 0.856418476 1 16.82562356 -6.226757913 1.71066786 1.082445501 0.676348794 0.701714026 0.114415856 0.193455906 1.120441689 0.046489746 0.043467774 5.93E-07 6.226757913 -0.406096707 DCSPS(ph)SPLKLDAR ddPTM_HeLa_A485_30min_R1 3 DCSPSSPLKLDAR 13 1 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 DCS(0.067)PS(0.466)S(0.466)PLKLDAR;DCS(0.068)PS(0.575)S(0.357)PLKLDAR;DCS(0.061)PS(0.47)S(0.47)PLKLDAR ;; 81.311 0.0022208 989410000 1596570 1363720 1075370 2563890 2024620 1540230 2572000 2077950 1333190 3295610 TRUE FALSE FALSE 1951721.488 1523195.191 1473194.113 2703948.819 1823041.724 1620874.061 2022471.189 1568329.504 1600749.004 2474075.078 0.788869144 0.615662477 0.595452469 1.092913001 0.736857883 0.655143441 0.817465568 0.633905381 0.647009065 1 21.23845785 DCSPS(ph)SPLKLDAR ddPTM_HeLa_A486_30min_R1 4 DCSPSSPLKLDAR 13 1 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 DCS(0.114)PS(0.443)S(0.443)PLKLDAR;DCS(0.289)PS(0.403)S(0.308)PLKLDAR;DCS(0.023)PS(0.557)S(0.42)PLKLDAR;DCS(0.01)PS(0.618)S(0.372)PLKLDAR ;;; 91.076 0.00074545 1288600000 1880640 1825780 928131 963372 1785370 2160160 2794090 2567540 1475220 3075440 TRUE FALSE FALSE 1748816.848 1681098.543 1287528.179 2242778.702 1561432.247 1893661.422 2094979.129 1982967.191 1603093.257 2305329.806 0.758597248 0.729222578 0.558500643 0.972866744 0.677314041 0.821427553 0.908754627 0.860166379 0.695385646 1 21.13654173 -13.99999984 0.059950632 1.782392668 0.444930354 0.283477584 0.11255261 519.7722049 2.271501768 60.29658712 10.04555104 1.00E-14 13.99999984 -1.337462315 DCSYGAVTS(ph)PTSTLESR ddPTM_HeLa_A485_30min_R1 1 DCSYGAVTSPTSTLESR 17 0 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4;J3KRP9 Q9HCD6 TANC2 Protein TANC2 1 0 DCSYGAVT(0.356)S(0.482)PT(0.161)S(0.001)TLESR 364.71 1.82E-119 670580000 287300 373410 342850 308300 416400 331400 394810 445840 299180 376330 TRUE FALSE FALSE 351208.8938 417077.0513 469684.4822 325141.6483 374941.7539 348751.5916 310455.6182 336497.041 359222.6818 282517.8568 1.243138744 1.476285626 1.662494851 1.150871141 1.327143559 1.234440879 1.09888848 1.191064681 1.271504342 1 18.10798253 -5.284877229 24.82289992 1.194719851 1.462204356 0.499332419 0.12741646 588.1871697 622944.554 0.035878809 0.053253809 5.19E-06 5.284877229 0.267484505 DCSYGAVTS(ph)PTSTLESR ddPTM_HeLa_A486_30min_R1 4 DCSYGAVTSPTSTLESR 17 0 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4;J3KRP9 Q9HCD6 TANC2 Protein TANC2 1 0 DCSYGAVT(0.129)S(0.866)PT(0.004)STLESR;DCSYGAVT(0.069)S(0.855)PT(0.069)S(0.006)T(0.001)LESR;DCSYGAVT(0.129)S(0.851)PT(0.009)S(0.009)T(0.002)LESR;DCSYGAVT(0.238)S(0.585)PT(0.16)S(0.014)T(0.002)LESR ;;; 388.1 1.80E-135 1852680000 1407290 1448430 1154570 444613 1610610 1310560 1518170 1514260 1307270 1667310 TRUE FALSE FALSE 1308646.238 1333651.132 1601650.424 1035081.533 1408592.275 1148876.432 1138307.808 1169496.054 1420585.216 1249804.724 1.047080567 1.067087607 1.28152054 0.828194608 1.127049889 0.919244751 0.910788531 0.935743026 1.136645741 1 20.25327127 -5.262983084 24.99987839 0.977742748 1.125415367 0.298556846 0.106760945 174.5278098 2826440.701 0.028968181 0.045667309 5.46E-06 5.262983084 0.14767262 DCSYGAVTSPT(ph)STLESR ddPTM_HeLa_A485_30min_R1 3 DCSYGAVTSPTSTLESR 17 0 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4;J3KRP9 Q9HCD6 TANC2 Protein TANC2 1 0 DCSYGAVT(0.158)S(0.057)PT(0.383)S(0.383)T(0.019)LESR;DCSYGAVT(0.082)S(0.344)PT(0.572)S(0.001)TLESR;DCSYGAVT(0.042)S(0.082)PT(0.872)S(0.004)TLESR ;; 263.07 5.14E-51 1079320000 627120 843510 826920 636560 938070 707010 860020 966020 724810 877910 TRUE FALSE FALSE 766620.6805 942151.1569 1132832.119 671333.6609 844672.457 744027.9504 676269.7013 729102.0803 870272.7186 659063.1937 1.163197532 1.429530834 1.718852046 1.018618043 1.281625897 1.128917466 1.026107523 1.106270366 1.320469307 1 19.33005728 -5.283181063 24.93431075 1.13287279 1.436427271 0.443642103 0.159567326 703.4313152 806724.1519 0.045053263 0.066891334 5.21E-06 5.283181063 0.30355448 DDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_A485_30min_R1 4 DDATPVRDEPMDAESITFK 19 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK ;;; 298.32 4.86E-79 964080000 1408840 960500 721587 2212610 1287780 1015520 1527930 1125690 999770 2676310 TRUE FALSE FALSE 1722231.598 1072822.12 988532.059 2333479.282 1159564.102 1068691.057 1201475.273 849612.7625 1200414.669 2009155.171 0.85719193 0.533966781 0.492013794 1.161423127 0.577140142 0.531910662 0.59800024 0.422870655 0.597472354 1 20.93815756 -10.07106429 4.954874136 1.000009079 0.636273366 0.216255642 0.204637271 2.09E-05 3.92E-06 0.202056673 0.049004719 8.49E-11 10.07106429 -0.363735712 DDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_A486_30min_R1 4 DDATPVRDEPMDAESITFK 19 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK ;;; 266.24 2.05E-58 1169600000 1093540 1205430 586560 477289 868410 1362390 1491360 1292950 1066260 1585660 TRUE FALSE FALSE 1016888.493 1109907.337 813691.7406 1111152.913 759485.9202 1194312.174 1118205.954 998573.5099 1158684.275 1188600.415 0.855534358 0.933793496 0.684579721 0.934841431 0.638974975 1.004805449 0.940775335 0.840125493 0.974830785 1 20.18083236 DDATLSGK(ac)R ddPTM_HeLa_A485_30min_R1 2 DDATLSGKR 9 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 1 ; DDATLSGK(1)R;DDATLSGK(1)R 130.75 0.0030722 83598000 19459 22411.2 26089.1 29484.9 51151 48862 75022 87345 124200 201520 FALSE TRUE FALSE 23787.58742 25031.99489 35740.54375 31095.58543 46058.22684 51420.33876 58992.93683 65923.5018 149125.8008 151284.7727 0.157237156 0.165462752 0.236246802 0.205543393 0.304447209 0.33989104 0.389946296 0.435757682 0.985729086 1 17.20690726 -7.641046399 1.494337649 1.047496816 0.239229977 0.930430663 0.078727838 0.094885825 0.393279518 0.075777107 0.023936619 2.29E-08 7.641046399 -0.808266839 down DDATLSGK(ac)R ddPTM_HeLa_A486_30min_R1 2 DDATLSGKR 9 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 1 ; DDATLSGK(1)R;DDATLSGK(1)R 153.08 0.00021009 188761000 81070 120525 98567 55716 143175 139607 132728 165601 147742 171958 FALSE TRUE FALSE 75387.41165 110974.1601 136734.7821 129709.6637 125216.6564 122383.7078 99518.05055 127897.2673 160548.3955 128898.5975 0.584858277 0.860941563 1.060793404 1.006292281 0.971435367 0.949457249 0.77206465 0.992231644 1.245540282 1 16.97587704 -4.346686833 2.835672385 0.98834093 0.548822948 0.56494301 0.110396729 0.266348148 3.279020548 0.0298512 0.243198735 4.50E-05 4.346686833 -0.439517982 DDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_A485_30min_R1 3 DDDDIDLFGSDDEEESEEAKR 21 1 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR ;; 341.27 4.87E-115 3896270000 1781760 1179425 749902 3335480 1254530 1152981 2126040 1405000 945490 3807760 TRUE FALSE FALSE 2178106.365 1317348.494 1027321.956 3517688.827 1129624.588 1213349.302 1671794.186 1060421.547 1135241.17 2858555.509 0.761960493 0.460844119 0.359384995 1.230582655 0.395173221 0.42446239 0.584838804 0.370964126 0.397138053 1 21.44685487 -10.08300308 4.664318012 1.000020527 0.552420496 0.216333783 0.25468605 344848951.2 2.30064458 87566.00962 0.061802304 8.26E-11 10.08300308 -0.44760003 DDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_A486_30min_R1 4 DDDDIDLFGSDDEEESEEAKR 21 1 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR ;;; 346.84 5.41E-128 6023730000 4889420 4478630 1482988 3319520 2707520 5606220 6950340 5854850 3412040 10025870 TRUE FALSE FALSE 4546696.907 4123727.048 2057240.669 7728010.319 2367917.595 4914581.576 5211291.419 4521828.465 3707798.374 7515326.895 0.604989905 0.548708939 0.273739346 1.028299957 0.315078456 0.653941159 0.693421789 0.601680875 0.493364883 1 22.84140443 -11.29302471 2.200485721 2.849539404 0.581016069 0.288491514 0.19821354 10287209.75 1253957.545 94857108.91 0.046821995 5.09E-12 11.29302471 -2.268523336 DDDDT(ph)SKCTQIK ddPTM_HeLa_A485_30min_R1 1 DDDDTSKCTQIK 12 1 A0A3B3IT65;A0A3B3IU91;A0A3B3IRN0;A0A3B3IRS7;A0A3B3IU68;A0A3F2YP66;A0A3B3ITP2;A0A3B3IT31;Q9NUN5-2;Q9NUN5-3;Q9NUN5 A0A3B3IT65 LMBRD1 Probable lysosomal cobalamin transporter 1 0 DDDDT(0.333)S(0.333)KCT(0.333)QIK 74.611 0.02124 288090000 290050 827930 1030700 37390 631640 744920 323440 637060 766960 85828 TRUE FALSE FALSE 354570.6218 924749.2115 1411998.821 39432.52102 568751.7038 783922.8593 254334.4017 480820.0361 920881.837 64432.65915 5.502964281 14.35218139 21.91433412 0.611995866 8.827071726 12.16654519 3.947290165 7.462365243 14.29215943 1 15.97550452 -5.267881419 24.99838529 7.346898466 13.96606206 0.250394515 5.530076486 754.6591184 2928460.59 1.543424917 2.352407289 5.40E-06 5.267881419 6.619163598 DDDDT(ph)SKCTQIK ddPTM_HeLa_A486_30min_R1 2 DDDDTSKCTQIK 12 1 A0A3B3IT65;A0A3B3IU91;A0A3B3IRN0;A0A3B3IRS7;A0A3B3IU68;A0A3F2YP66;A0A3B3ITP2;A0A3B3IT31;Q9NUN5-2;Q9NUN5-3;Q9NUN5 A0A3B3IT65 LMBRD1 Probable lysosomal cobalamin transporter 1 0 DDDDT(0.333)S(0.333)KCT(0.333)QIK;DDDDT(0.333)S(0.333)KCT(0.333)QIK ; 84.479 0.0078304 753790000 791610 1709660 2728200 14340.3 2590130 765660 355050 843690 1332180 101043 TRUE FALSE FALSE 736122.2269 1574180.315 3784632.104 33384.94312 2265251.743 671200.6539 266212.7347 651600.2046 1447654.435 75741.17512 9.718917428 20.78367959 49.96796125 0.440776672 29.9077977 8.861767101 3.514769004 8.602985148 19.11317632 1 16.20879018 -6.290349601 19.29696039 8.399678228 22.42497358 0.226803957 12.86741244 68.97238271 46035.85708 4.487981267 3.960944403 5.12E-07 6.290349601 14.02529535 DDDS(ph)DDESQSSHTGK ddPTM_HeLa_A486_30min_R1 2 DDDSDDESQSSHTGK 15 0 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 DDDS(1)DDESQSSHTGK;DDDS(1)DDESQSSHTGK ; 240.21 2.62E-41 170070000 413710 290420 186254 55996 269280 493500 501370 386670 389750 498290 TRUE FALSE FALSE 384711.0654 267406.0615 258376.5369 130361.5179 235504.3915 432616.9875 375921.923 298633.6819 423533.8438 373514.9407 1.029975038 0.715917979 0.691743512 0.34901286 0.630508624 1.158232082 1.006444139 0.799522722 1.133914063 1 18.51080643 -6.248852131 24.44340373 1.006269118 0.667119331 0.467471223 0.17870462 554.2501343 1076308.54 0.062495183 0.062067168 5.64E-07 6.248852131 -0.339149786 DDDYRGGGDRYEDRYDR ddPTM_HeLa_A485_30min_R1 4 DDDYRGGGDRYEDRYDR 17 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;; ;;; 168.32 3.48E-12 7739410000 4367070 6421210 5066670 3313730 7857290 6667260 9186000 12574900 4226840 4758190 FALSE FALSE TRUE 5338509.655 7172114.652 6941042.075 3494750.679 7074990.619 7016347.424 7223336.057 9490886.058 5075128.017 3572060.801 1.494518137 2.007836667 1.943147797 0.978356997 1.980646751 1.964229562 2.022176122 2.656977747 1.420784331 1 21.76832521 DDDYRGGGDRYEDRYDR ddPTM_HeLa_A486_30min_R1 4 DDDYRGGGDRYEDRYDR 17 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;; ;;; 144.3 5.59E-08 4986910000 4147650 2975380 2800320 1934040 5433260 3389980 4525420 4539620 1988150 4480590 FALSE FALSE TRUE 3856921.153 2739600.053 3884678.899 4502542.861 4751769.868 2971758.734 3393112.051 3506047.625 2160484.443 3358621.1 1.148364474 0.815691908 1.1566291 1.34059268 1.414797837 0.884815121 1.010269378 1.043894956 0.64326531 1 21.67943762 -6.310173183 24.99992574 0.925056071 1.163397108 0.339362252 0.179943694 546.3858314 280288.5609 0.068425621 0.060345831 4.90E-07 6.310173183 0.238341037 DDEKEAEEGEDDRDS(ph)ANGEDDS ddPTM_HeLa_A485_30min_R1 8 DDEKEAEEGEDDRDSANGEDDS 22 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;P07910-3;G3V2D6 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.938)ANGEDDS(0.062);DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.98)ANGEDDS(0.02);DDEKEAEEGEDDRDS(0.906)ANGEDDS(0.094);DDEKEAEEGEDDRDS(1)ANGEDDS ;;;;;;; 223.57 3.81E-36 23342714000 4596752 3285096 1777695 7662487 2933226 3498900 5649356 4624812 2392039 8997720 TRUE FALSE FALSE 5619283.624 3669259.401 2435338.357 8081069.262 2641183.72 3682096.994 4442324.94 3490569.606 2872099.286 6754753.995 0.831900559 0.543211404 0.360536943 1.19635286 0.39101109 0.545111931 0.657659027 0.516757473 0.425196726 1 22.6874718 -10.39169496 5.232703675 1.000258283 0.606289846 0.199277619 0.236005333 0.000691317 8.04E-05 0.222145953 0.053843514 4.06E-11 10.39169496 -0.393968437 DDEKEAEEGEDDRDS(ph)ANGEDDS ddPTM_HeLa_A486_30min_R1 8 DDEKEAEEGEDDRDSANGEDDS 22 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;P07910-3;G3V2D6 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.998)ANGEDDS(0.002);DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.85)ANGEDDS(0.15);DDEKEAEEGEDDRDS(1)ANGEDDS;DDEKEAEEGEDDRDS(0.999)ANGEDDS(0.001);DDEKEAEEGEDDRDS(0.999)ANGEDDS(0.001) ;;;;;;; 276.08 4.33E-73 39178040000 7234650 5832770 1942102 4209940 3260590 7012720 8702190 6937770 4450440 14406280 TRUE FALSE FALSE 6727538.395 5370560.063 2694135.906 9800953.079 2851616.398 6147561.907 6524810.02 5358191.221 4836207.723 10798853.72 0.622986344 0.497326865 0.249483508 0.907591985 0.264066583 0.569279117 0.604213205 0.49618148 0.447844544 1 23.36437484 -10.33097219 3.513757961 1.002154118 0.516619518 0.399067456 0.177562273 198823123.8 293819228.4 4441973.555 0.043062383 4.67E-11 10.33097219 -0.4855346 DDGDEEGLLT(ph)HS(ph)EEELEHSQDTDADDGALQ ddPTM_HeLa_A486_30min_R1 1 DDGDEEGLLTHSEEELEHSQDTDADDGALQ 30 0 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 2 0 DDGDEEGLLT(0.997)HS(0.991)EEELEHS(0.011)QDT(0.001)DADDGALQ 59.837 0.025944 457370000 30769 29448 22695 18824 28114 34855 31973 32876 30409 38307 TRUE FALSE FALSE 28612.25199 27114.43323 31483.11179 43823.22331 24587.67997 30554.94448 23973.01722 25390.85248 33044.8766 28714.67786 0.996432979 0.944270849 1.096411805 1.526161064 0.856275668 1.064088012 0.834869795 0.884246468 1.150800882 1 14.80950076 DDGELGGNFLHSFQNDNYSPSMT(ph)MSV ddPTM_HeLa_A486_30min_R1 1 DDGELGGNFLHSFQNDNYSPSMTMSV 26 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 DDGELGGNFLHSFQNDNYSPS(0.003)MT(0.499)MS(0.499)V 89.634 0.0051597 58772000 55858 52003 38738 16055 54628 49329 58306 60477 45127 52806 TRUE FALSE FALSE 51942.64265 47882.09289 53738.39104 37376.85137 47776.04685 43243.28952 43717.2221 46707.7073 49038.64469 39583.03389 1.31224511 1.209662024 1.357611728 0.944264441 1.206982946 1.092470315 1.10444344 1.179993111 1.238880396 1 15.27259457 -5.235863508 24.99049767 1.120208044 1.284821861 0.455828369 0.091274711 748.0219048 730900.2426 0.023865525 0.041318079 5.81E-06 5.235863508 0.164613817 DDGELGGNFLHSFQNDNYSPSMTMS(ph)V ddPTM_HeLa_A485_30min_R1 2 DDGELGGNFLHSFQNDNYSPSMTMSV 26 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 DDGELGGNFLHSFQNDNYSPSMT(0.017)MS(0.983)V;DDGELGGNFLHSFQNDNYSPSMT(0.024)MS(0.976)V ; 174.53 2.18E-14 188732000 108194 127319 119419 120666 157146 134853 176770 178316 110496 146137 TRUE FALSE FALSE 132261.382 142207.8495 163597.0575 127257.678 141499.9925 141913.6946 139001.6454 134583.7214 132671.5337 109707.7354 1.205579366 1.296242686 1.491208045 1.159969966 1.289790478 1.293561426 1.267017726 1.226747786 1.209317951 1 16.74330573 -8.731633653 0.487583548 0.976472105 1.30269929 0.531264464 0.080572193 2.200701548 0.809553189 0.185917971 0.043601298 1.86E-09 8.731633653 0.326227185 DDGELGGNFLHSFQNDNYSPSMTMS(ph)V ddPTM_HeLa_A486_30min_R1 2 DDGELGGNFLHSFQNDNYSPSMTMSV 26 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 DDGELGGNFLHSFQNDNYSPSMT(0.021)MS(0.979)V;DDGELGGNFLHSFQNDNYS(0.001)PS(0.005)MT(0.22)MS(0.774)V ; 108.88 0.00033701 86480000 101872 102270 73800 26779 94810 90381 111503 111179 77234 104653 TRUE FALSE FALSE 94731.29887 94165.75274 102377.3364 62342.86534 82918.04573 79230.71115 83603.77004 85865.96872 83928.70531 78447.20762 1.207580253 1.200370996 1.305047554 0.794711083 1.056991679 1.009987653 1.0657329 1.094570111 1.069874988 1 16.25943447 -5.229293322 24.9999932 1.020953586 1.233936763 0.601826623 0.083510319 478.384759 372039.2884 0.022853183 0.039578903 5.90E-06 5.229293322 0.212983177 DDGSSMSFYVRPS(ph)PAK ddPTM_HeLa_A485_30min_R1 3 DDGSSMSFYVRPSPAK 16 1 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 DDGSSMSFYVRPS(1)PAK;DDGSSMSFYVRPS(1)PAK;DDGSSMSFYVRPS(1)PAK ;; 145.02 3.83E-08 891900000 1019440 866110 694090 1645420 1351570 1021630 1655310 1560760 941130 2143140 TRUE FALSE FALSE 1246210.911 967394.0303 950862.7745 1735305.128 1217002.945 1075120.967 1301639.496 1177981.163 1130006.158 1608894.64 0.774575836 0.601278671 0.591003756 1.078569774 0.756421779 0.668235782 0.809027182 0.732167995 0.702349384 1 20.61763842 -11.5034108 2.155046048 4.0836523 0.746399861 0.256208992 0.129851488 6839893.408 569422.0522 102753003.8 0.036171139 3.14E-12 11.5034108 -3.337252438 DDGVFVQEVTQNS(ph)PAAR ddPTM_HeLa_A485_30min_R1 4 DDGVFVQEVTQNSPAAR 17 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2;E9PQE3 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR ;;; 425.54 1.41E-172 5957400000 817537 804050 774721 834051 1316324 849813 1003555 1044565 776914 1225443 TRUE FALSE FALSE 999395.2852 898076.6532 1061322.537 879613.0942 1185266.161 894307.8946 789137.276 788383.7959 932833.5135 919962.6127 1.08634337 0.976209947 1.153658336 0.956140045 1.288385141 0.972113304 0.857792768 0.856973735 1.013990678 1 19.81121571 -6.509303934 24.83449335 0.919510789 1.086435869 0.373701107 0.098769475 593.3480861 1085506.78 0.034317449 0.028974518 3.10E-07 6.509303934 0.166925079 DDGVFVQEVTQNS(ph)PAAR ddPTM_HeLa_A486_30min_R1 4 DDGVFVQEVTQNSPAAR 17 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2;E9PQE3 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR ;;; 434.71 3.29E-173 7088700000 1085550 1194260 870660 424443 1399970 1094150 1384920 1232330 869620 1140900 TRUE FALSE FALSE 1009458.551 1099622.488 1207802.869 988124.7542 1224372.708 959164.8975 1038398.368 951755.3606 944999.3618 855211.214 1.180361686 1.285790539 1.412286052 1.15541604 1.431661195 1.121553228 1.214201066 1.112889243 1.104989442 1 19.70592125 -7.311974307 0.73692969 1.012485205 1.290686382 0.501024858 0.092479337 0.527073982 0.552342726 0.082451092 0.038370215 4.88E-08 7.311974307 0.278201177 DDGYSTKDS(ph)YSSR ddPTM_HeLa_A485_30min_R1 2 DDGYSTKDSYSSR 13 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DDGYS(0.014)T(0.014)KDS(0.87)YS(0.095)S(0.008)R;DDGYST(0.001)KDS(0.996)YS(0.003)SR ; 98.035 0.0004702 349070000 177419 184447 126227 230214 237984 221286 335750 338570 175005 334340 TRUE FALSE FALSE 216885.2445 206016.4722 172923.62 242790.0079 214289.4773 232872.1928 264014.2697 255535.1766 210126.8983 250995.1911 0.864101195 0.820798483 0.688951925 0.967309401 0.853759295 0.927795436 1.051869833 1.018087938 0.837174997 1 17.9373002 -5.81504881 1.257850749 0.973342385 0.80346944 0.407707263 0.080867689 0.441279035 1.470336935 0.033620155 0.045781609 1.53E-06 5.81504881 -0.169872946 DDGYSTKDS(ph)YSSR ddPTM_HeLa_A486_30min_R1 1 DDGYSTKDSYSSR 13 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DDGYS(0.002)T(0.002)KDS(0.963)Y(0.002)S(0.029)S(0.003)R 63.691 0.010402 484700000 234020 224230 126050 121430 213840 241540 324450 323250 180840 308480 TRUE FALSE FALSE 217616.4065 206461.1982 174859.9357 282695.1767 187018.1932 211741.2506 243269.1783 249653.0315 196515.3568 231234.6001 0.941106592 0.892864641 0.756201432 1.222547043 0.808781182 0.91569882 1.052044885 1.079652575 0.849852733 1 17.81899776 -5.163326024 20.91376148 0.985483913 0.866346265 0.189684476 0.1194285 21.05492759 4480.489114 0.031806682 0.055090991 6.87E-06 5.163326024 -0.119137648 DDHDDFFST(ph)TPLQHQR ddPTM_HeLa_A486_30min_R1 2 DDHDDFFSTTPLQHQR 16 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 DDHDDFFS(0.052)T(0.551)T(0.397)PLQHQR;DDHDDFFS(0.058)T(0.554)T(0.388)PLQHQR ; 187.39 1.39E-17 178542000 136582 189066 150857 29453 164123 164404 154475 149308 155158 132793 TRUE FALSE FALSE 127008.3071 174083.7216 209272.8705 68568.07247 143537.163 144121.506 115823.7211 115313.8278 168607.2204 99540.76846 1.275942602 1.748868572 2.102383513 0.688844114 1.441993719 1.447864109 1.163580741 1.158458283 1.693850901 1 16.6029999 -5.247922944 24.99966398 1.249819662 1.713045207 0.323460406 0.317825473 981.1106212 1814635.004 0.08504656 0.146258323 5.65E-06 5.247922944 0.463225545 DDHDDFFSTT(ph)PLQHQR ddPTM_HeLa_A485_30min_R1 2 DDHDDFFSTTPLQHQR 16 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 DDHDDFFS(0.016)T(0.142)T(0.842)PLQHQR;DDHDDFFS(0.013)T(0.132)T(0.855)PLQHQR ; 143.39 1.67E-07 156659000 103445 120343 118908 96361 134499 105051 106754 96482 118069 127013 TRUE FALSE FALSE 126455.9834 134416.067 162897.0174 101624.9574 121107.8073 110551.3079 83945.1358 72819.63822 141764.3653 95350.9966 1.326215644 1.409697557 1.708393443 1.065798587 1.270126287 1.159414289 0.880380267 0.763700861 1.486763331 1 16.5409604 -5.68854572 1.372076675 1.038041531 1.460936806 0.355356631 0.220934151 0.450671933 1.766594424 0.083653719 0.126117487 2.05E-06 5.68854572 0.422895274 DDISEIQSLASDHS(ph)GR ddPTM_HeLa_A485_30min_R1 1 DDISEIQSLASDHSGR 16 0 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 DDISEIQSLAS(0.109)DHS(0.891)GR 65.149 0.011196 83880000 20798 32237 23308 15256 25587 21779 26155 25076 26732 27506 TRUE FALSE FALSE 25424.44335 36006.83673 31930.59913 16089.39665 23039.46844 22919.31476 20566.77058 18926.07168 32096.8672 20649.26041 1.231252008 1.743734933 1.546331369 0.779175444 1.115752719 1.10993393 0.996005192 0.916549615 1.55438338 1 14.33380249 -5.237802193 24.30675839 1.0647351 1.530769131 0.451005512 0.221839139 467.9290563 481182.8644 0.057965007 0.100313639 5.78E-06 5.237802193 0.46603403 DDIVPWHTSMQVADR ddPTM_HeLa_A485_30min_R1 1 DDIVPWHTSMQVADR 15 0 Q9NUJ1-2;Q9NUJ1 Q9NUJ1-2 ABHD10 "Mycophenolic acid acyl-glucuronide esterase, mitochondrial" 0 0 58.21 0.023763 907960000 15815 17369 22573 35957 23534 22823 14996 39307 17669 29671 FALSE FALSE TRUE 19332.99219 19400.15346 30923.69204 37921.23986 21190.87233 24017.97699 11791.98209 29666.89662 21215.00623 22274.56575 0.867940251 0.870955406 1.388296067 1.702445753 0.951348393 1.078269146 0.529392233 1.331873175 0.952431866 1 14.44310969 DDKHGS(ph)YEDAVHSGALND ddPTM_HeLa_A485_30min_R1 2 DDKHGSYEDAVHSGALND 18 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 1 0 DDKHGS(0.878)Y(0.004)EDAVHS(0.118)GALND;DDKHGS(1)YEDAVHSGALND ; 139.04 1.11E-06 1391020000 352530 337370 254230 606480 498930 404080 641080 605640 326200 823310 TRUE FALSE FALSE 430949.0823 376822.4868 348280.2564 639610.4667 449254.7774 425237.004 504108.0209 457105.8404 391665.3479 618073.9689 0.697245158 0.609672152 0.563492841 1.034844531 0.726862479 0.688003419 0.81561115 0.739564944 0.633686852 1 19.23741998 -11.47730814 2.263066648 4.288798018 0.726617711 0.308420262 0.124244617 5444501.975 390998.1625 92885647.54 0.032141788 3.33E-12 11.47730814 -3.562180307 DDKHGS(ph)YEDAVHSGALND ddPTM_HeLa_A486_30min_R1 2 DDKHGSYEDAVHSGALND 18 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 1 0 DDKHGS(1)YEDAVHSGALND;DDKHGS(0.999)Y(0.001)EDAVHSGALND ; 197.86 2.46E-25 769380000 678250 632960 314860 335640 710250 718020 925530 946090 483560 998950 TRUE FALSE FALSE 630708.1775 582801.9444 436782.2242 781386.8823 621163.8222 629437.9927 693952.6047 730685.96 525475.3701 748806.4179 0.842284685 0.778307892 0.583304595 1.043509863 0.829538593 0.840588405 0.926745001 0.975800878 0.701750623 1 19.51423327 -5.26344897 24.99120752 0.896936369 0.738999947 0.326683802 0.110219335 217.1837036 2700903.766 0.029897462 0.04697643 5.45E-06 5.26344897 -0.157936422 DDNEDNS(ph)NDGTQPSKR ddPTM_HeLa_A486_30min_R1 1 DDNEDNSNDGTQPSKR 16 1 S5FZ81;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 0 DDNEDNS(0.997)NDGT(0.003)QPSKR 115.39 8.38E-06 0 123900 122030 48128 50790 67547 120830 135810 116660 94038 180500 TRUE FALSE FALSE 115215.2498 112359.8984 66764.45051 118241.6868 59074.62541 105923.2231 101828.9015 90099.06467 102189.2896 135301.6251 0.851543725 0.830440124 0.493448992 0.8739118 0.436614308 0.782867338 0.75260664 0.665912657 0.75527023 1 17.04581964 -8.09935019 7.170205738 0.999999418 0.707838194 0.278926822 0.138629442 3.042566766 219.4980276 0.127777939 0.033079383 7.96E-09 8.09935019 -0.292161225 DDPDGKQEAKPQQAAGMLS(ph)PK ddPTM_HeLa_A485_30min_R1 4 DDPDGKQEAKPQQAAGMLSPK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK ;;; 144.44 9.44E-10 4388990000 2381740 971530 478154 6131770 1756370 1573650 3713470 2499350 1105411 7567930 TRUE FALSE FALSE 2911549.846 1085141.982 655043.0622 6466733.069 1581499.636 1656043.881 2920056.798 1886380.494 1327256.848 5681384.328 0.512471904 0.190999573 0.115296383 1.138231933 0.278365191 0.29148598 0.513969242 0.33202832 0.233615044 1 22.43781107 -10.39790947 3.373332833 1.005556465 0.402346098 0.29996641 0.274637264 180129080.6 246513369.6 9685209.167 0.069929206 4.00E-11 10.39790947 -0.603210367 DDPDGKQEAKPQQAAGMLS(ph)PK ddPTM_HeLa_A486_30min_R1 5 DDPDGKQEAKPQQAAGMLSPK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK ;;;; 160.52 9.15E-14 5369240000 4103920 3241200 652940 4307560 2207588 5604440 8510520 7063990 2536449 10889090 TRUE FALSE FALSE 3816256.401 2984355.508 905775.8543 10028217.37 1930691.728 4913021.175 6381097.881 5455673.683 2756310.442 8162390.988 0.467541485 0.365622709 0.110969427 1.228588215 0.236535071 0.601909561 0.781768221 0.668391614 0.337684196 1 22.96056039 -14 0.069261526 2.373702983 0.028435161 0.1763811 0.301179713 576.3702724 2.871506531 131.2137357 16.6670393 1.00E-14 14 -2.345267821 DDQRS(ph)S(ph)VLK ddPTM_HeLa_A485_30min_R1 2 DDQRSSVLK 9 1 H0YK95 H0YK95 AP4E1 2 0 DDQRS(1)S(1)VLK;DDQRS(1)S(1)VLK ; 72.652 0.014478 102217000 140427 133174 111547 184313 182214 164827 243620 229770 140412 248210 TRUE FALSE FALSE 171664.5017 148747.5408 152812.8772 194381.5525 164072.1344 173457.0868 191568.5968 173418.5472 168591.4005 186335.815 0.921264126 0.798276707 0.820093964 1.043178696 0.880518511 0.930884312 1.028082534 0.930677483 0.904771852 1 17.50754547 -5.23815886 24.9921614 0.95518763 0.841718095 0.446718097 0.057493656 723.4319682 776619.5616 0.015340001 0.026546783 5.78E-06 5.23815886 -0.113469535 DDQRS(ph)S(ph)VLK ddPTM_HeLa_A486_30min_R1 1 DDQRSSVLK 9 1 H0YK95 H0YK95 AP4E1 2 0 DDQRS(1)S(1)VLK 70.488 0.01608 45428000 102380 101160 67148 53264 105550 115310 140000 135700 89679 133100 TRUE FALSE FALSE 95203.69069 93143.71318 93149.50389 124001.2838 92310.93479 101084.2246 104970.5192 104804.0723 97452.44793 99770.89366 0.954223092 0.933576014 0.933634054 1.24286031 0.925229106 1.013163468 1.052115656 1.050447365 0.976762304 1 16.60633138 DDRGPPQRPK ddPTM_HeLa_A485_30min_R1 2 DDRGPPQRPK 10 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 73.499 0.0096256 66024000 114450 149306 99306 108410 151356 158735 179753 235839 125920 163651 FALSE FALSE TRUE 139909.0077 166766.0379 136043.4219 114332.1638 136286.4652 167046.1191 141347.3031 177999.1155 151190.989 122855.8175 1.138806534 1.357412627 1.107342124 0.930620675 1.109320405 1.359692382 1.150513716 1.44884564 1.230637605 1 16.90660665 -6.236299649 24.14662115 1.260526726 1.129215678 0.110924452 0.147867621 993.0254831 953797.1477 0.049596229 0.049572845 5.80E-07 6.236299649 -0.131311048 DDRGPPQRPK ddPTM_HeLa_A486_30min_R1 2 DDRGPPQRPK 10 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 60.434 0.023838 68508000 147819 135473 80196 69179 159961 142973 180704 170385 108929 173306 FALSE FALSE TRUE 137457.6514 124737.6261 111250.0389 161052.2081 139897.1998 125334.4449 135489.9479 131592.055 118371.0534 129909.0496 1.058106821 0.960191969 0.856368662 1.239730478 1.076885716 0.964786097 1.042960043 1.012955259 0.911184046 1 16.98714241 -9.535073035 9.887583478 0.999999982 1.015393691 0.001443236 0.099224741 0 0 0.098060601 0.023783189 2.92E-10 9.535073035 0.015393709 DDS(ph)HS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 3 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 DDS(1)HS(1)AEDS(1)EDEKEDHK;DDS(1)HS(1)AEDS(1)EDEKEDHK;DDS(1)HS(1)AEDS(1)EDEKEDHK ;; 228.31 3.68E-34 3207700000 2225510 1347130 987790 7356810 2163180 1288250 3037010 1558250 1165580 8428370 TRUE FALSE FALSE 2720567.022 1504665.135 1353214.626 7758693.902 1947806.204 1355700.778 2388128.003 1176086.744 1399501.215 6327332.472 0.429970613 0.237804026 0.213868108 1.22621878 0.307840028 0.214261031 0.37743046 0.185874023 0.221183448 1 22.59316597 -10.39623283 5.301194575 1.00038897 0.382548471 0.286734468 0.29361202 0.001399705 0.000159416 0.294802424 0.071456708 4.02E-11 10.39623283 -0.617840499 DDS(ph)HS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 3 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 DDS(1)HS(1)AEDS(1)EDEKEDHK;DDS(1)HS(1)AEDS(1)EDEKEDHK;DDS(1)HS(1)AEDS(1)EDEKEDHK ;; 213.48 1.44E-25 4543280000 2849950 2435090 960991 4397010 1799290 4576840 6282300 4730290 2513890 10597740 TRUE FALSE FALSE 2650183.222 2242124.6 1333112.451 10236461.49 1573606.27 4012196.015 4710402.093 3653306.229 2731796.009 7943996.924 0.333608289 0.282241373 0.167813818 1.28857823 0.198087472 0.505060117 0.592951148 0.459882634 0.343881806 1 22.92143363 -11.55525259 2.056990247 8.340130256 0.470909679 0.219039828 0.303586308 15572104.23 715172.129 534740582.1 0.077096173 2.78E-12 11.55525259 -7.869220577 DDS(ph)HS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 2 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 DDS(1)HS(1)AEDS(1)EDEKEDHKNVR;DDS(1)HS(1)AEDS(1)EDEKEDHKNVR ; 187.09 4.19E-19 8181970000 3492010 2168040 1223065 12167890 3275860 2614700 7543090 4916250 2042680 14763510 TRUE FALSE FALSE 4268795.577 2421573.419 1675527.639 12832591.02 2949703.876 2751601.649 5931447.2 3710531.979 2452627.139 11083238.66 0.385157778 0.218489694 0.151176717 1.157837651 0.266140969 0.248266931 0.53517274 0.3347877 0.221291557 1 23.40187618 -10.52411447 2.654661649 1.032924605 0.396083453 0.30387624 0.276459347 16282966.52 16048882.53 3857086.618 0.072564685 2.99E-11 10.52411447 -0.636841152 DDS(ph)HS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A486_30min_R1 5 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 DDS(1)HS(1)AEDS(1)EDEKEDHKNVR;DDS(1)HS(1)AEDS(1)EDEKEDHKNVR;DDS(1)HS(1)AEDS(1)EDEKEDHKNVR;DDS(1)HS(1)AEDS(1)EDEKEDHKNVR;DDS(1)HS(1)AEDS(1)EDEKEDHKNVR ;;;; 188.22 3.71E-19 20131000000 7014360 6316620 1521119 11370800 4060090 9328600 15626130 12495990 4891760 27960890 TRUE FALSE FALSE 6522689.586 5816068.026 2110137.014 26471797.05 3550835.653 8177732.178 11716307 9650925.863 5315781.695 20959301.15 0.311207399 0.277493414 0.100677833 1.263009528 0.169415747 0.390171987 0.559002751 0.460460289 0.253623995 1 24.32108728 -10.69493012 2.796620458 1.079994838 0.428688834 0.239487302 0.309465526 92089195.5 81824955.12 52101174.07 0.081175411 2.02E-11 10.69493012 -0.651306004 DDS(ph)HSAEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 1 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 DDS(0.922)HS(0.078)AEDS(1)EDEKEDHK 107.07 0.00050883 1279600000 1242900 1540000 1072500 2144100 982070 1148300 1339800 1035300 998210 2465100 TRUE FALSE FALSE 1519378.817 1720089.604 1469262.38 2261226.754 884291.6625 1208423.212 1053540.785 781391.0517 1198541.591 1850595.937 0.821021373 0.929478753 0.793940131 1.221891126 0.477841567 0.65299139 0.569298118 0.422237527 0.647651693 1 20.8195585 -5.781314411 24.99999245 0.597729374 0.930172485 0.410826172 0.181361628 214.1508385 269370.3605 0.053294745 0.060509037 1.65E-06 5.781314411 0.332443111 DDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 3 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 DDS(0.006)HS(0.994)AEDS(1)EDEKEDHK;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHK;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHK ;; 249.59 1.46E-42 19229300000 3332920 1608040 1057680 8835900 2297000 1542340 3952220 1918230 1439630 9288800 TRUE FALSE FALSE 4074316.556 1796086.29 1448959.846 9318582.843 2068302.615 1623094.537 3107795.91 1447781.085 1728550.536 6973273.108 0.584276063 0.25756718 0.207787623 1.336328393 0.296604275 0.232759353 0.445672479 0.207618583 0.247882237 1 22.73340456 -10.31096238 4.118213661 1.000824411 0.424524307 0.219170719 0.326127564 147117209 73674499.77 1069048.972 0.080620796 4.89E-11 10.31096238 -0.576300103 DDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 6 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 DDS(0.351)HS(0.649)AEDS(1)EDEKEDHK;DDS(0.004)HS(0.996)AEDS(1)EDEKEDHK;DDS(0.097)HS(0.903)AEDS(1)EDEKEDHK;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHK;DDS(0.02)HS(0.98)AEDS(1)EDEKEDHK;DDS(0.016)HS(0.984)AEDS(1)EDEKEDHK ;;;;; 223.15 8.31E-34 64527390000 3173700 3303910 880838 4013900 1818110 4932920 6838250 5336290 2431660 8968390 TRUE FALSE FALSE 2951240.019 3042096.139 1221922.063 9344562.051 1590065.691 4324346.485 5127247.522 4121333.257 2642438.247 6722646.77 0.438999715 0.452514648 0.181762051 1.390012353 0.23652376 0.643250588 0.762682869 0.61305218 0.393065163 1 22.68059792 -14 0.244917581 3.392583212 0.539104587 0.132500408 0.32384056 383.3434998 3.817508331 460.2724871 0.482918787 1.00E-14 14 -2.853478625 DDSHS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 13 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 DDS(0.02)HS(0.98)AEDS(1)EDEKEDHKNVR;DDS(0.011)HS(0.989)AEDS(1)EDEKEDHKNVR;DDS(0.462)HS(0.538)AEDS(1)EDEKEDHKNVR;DDS(0.001)HS(0.999)AEDS(1)EDEKEDHKNVR;DDS(0.111)HS(0.889)AEDS(1)EDEKEDHKNVR;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHKNVR;DDS(0.003)HS(0.997)AEDS(1)EDEKEDHKNVR;DDS(0.02)HS(0.98)AEDS(1)EDEKEDHKNVR;DDS(0.018)HS(0.982)AEDS(1)EDEKEDHKNVR;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHKNVR;DDS(0.201)HS(0.806)AEDS(0.993)EDEKEDHKNVR;DDS(0.087)HS(0.913)AEDS(1)EDEKEDHKNVR;DDSHS(1)AEDS(1)EDEKEDHKNVR ;;;;;;;;;;;; 217.21 2.02E-35 93214068000 5734912 3415267 2064535.4 14288786 5383869 5003166 11278891 8568755 3684762 17779340 TRUE FALSE FALSE 7010623.389 3814652.767 2828292.957 15069346.2 4847832.098 5265124.035 8869063.798 6467254.401 4424259.935 13347277.74 0.525247434 0.285800059 0.21190036 1.129020201 0.363207554 0.394471752 0.664484846 0.484537336 0.331472831 1 23.67004219 -10.5975523 2.698345036 1.041673656 0.491289681 0.27913314 0.246880552 35987236.01 34018748 10646547.06 0.063866743 2.53E-11 10.5975523 -0.550383975 DDSHS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A486_30min_R1 14 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 DDS(0.035)HS(0.965)AEDS(1)EDEKEDHKNVR;DDS(0.171)HS(0.829)AEDS(1)EDEKEDHKNVR;DDS(0.129)HS(0.871)AEDS(1)EDEKEDHKNVR;DDS(0.001)HS(0.999)AEDS(1)EDEKEDHKNVR;DDS(0.001)HS(0.999)AEDS(1)EDEKEDHKNVR;DDS(0.085)HS(0.915)AEDS(1)EDEKEDHKNVR;DDS(0.455)HS(0.545)AEDS(1)EDEKEDHKNVR;DDS(0.055)HS(0.945)AEDS(0.999)EDEKEDHKNVR;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHKNVR;DDSHS(1)AEDS(1)EDEKEDHKNVR;DDS(0.002)HS(0.998)AEDS(1)EDEKEDHKNVR;DDS(0.111)HS(0.889)AEDS(1)EDEKEDHKNVR;DDS(0.019)HS(0.981)AEDS(1)EDEKEDHKNVR;DDS(0.447)HS(0.553)AEDS(1)EDEKEDHKNVR ;;;;;;;;;;;;; 229.76 5.05E-36 1.21E+11 8689390 7806690 2445623 10291230 6182706 11338710 17927480 15436220 5613121 24160930 TRUE FALSE FALSE 8080308.633 7188059.453 3392633.722 23958503.53 5407213.362 9939855.244 13441834.89 11921729.68 6099670.848 18110875.87 0.446157806 0.396891873 0.187325767 1.322879341 0.298561671 0.548833492 0.742196843 0.658263563 0.336796017 1 24.11035298 -14 0.219837515 3.137072934 0.505222468 0.156605319 0.30510787 303.9850162 3.042056667 289.7051737 0.585968774 1.00E-14 14 -2.631850466 DDSHSAEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 3 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK ;; 344 6.90E-93 11149120000 4791580 2097250 1404090 11964740 3134600 2623580 5289620 2905330 2169080 13675710 TRUE FALSE FALSE 5857450.44 2342505.144 1923521.32 12618343.45 2822508.218 2760946.592 4159449.475 2192793.262 2604394.46 10266607.18 0.570534193 0.228167407 0.187357058 1.229066548 0.274921225 0.268924928 0.40514353 0.213584997 0.253676255 1 23.29145616 -10.15021753 5.170069214 1.00002413 0.402979239 0.26679706 0.296661872 8.38E-05 1.38E-05 0.291822718 0.070774551 7.08E-11 10.15021753 -0.597044891 DDSHSAEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 4 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK;DDSHSAEDS(1)EDEKEDHK ;;; 398.19 1.98E-136 14918610000 6440130 5491930 1710800 5993600 3155560 9316690 11303760 8790390 4755950 15825550 TRUE FALSE FALSE 5988710.144 5056729.466 2373267.577 13953403.7 2759760.24 8167291.513 8475439.689 6789010.09 5168199.575 11862729.27 0.504834091 0.426270325 0.200060839 1.176238906 0.232641256 0.688483344 0.714459505 0.572297482 0.435666992 1 23.49993263 -14 0.211845354 3.083204461 0.495391619 0.203259123 0.263983761 243.4041495 2.428878582 216.7261955 0.541247101 1.00E-14 14 -2.587812842 DDSHSAEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 6 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR ;;;;; 321.95 1.24E-102 36439600000 9048180 4971570 2806506 17655890 7534080 8000810 14225930 11628260 5085640 22148150 TRUE FALSE FALSE 11060916.43 5552951.865 3844749.358 18620386.56 6783960.541 8419720.04 11186443.84 8776411.003 6106281.3 16627023.81 0.6652373 0.333971487 0.23123497 1.119886925 0.408008109 0.506387682 0.672786902 0.527840166 0.367250409 1 23.98702662 -10.44454468 3.232748048 1.007376472 0.538174355 0.257687391 0.235762821 158371596.8 207628430.6 10677534.9 0.057233721 3.59E-11 10.44454468 -0.469202117 DDSHSAEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A486_30min_R1 10 DDSHSAEDSEDEKEDHKNVR 20 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHS(0.008)AEDS(0.992)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR;DDSHSAEDS(1)EDEKEDHKNVR ;;;;;;;;; 337.79 9.86E-115 72468956000 28147314 21085772 6773809 24614773 17042601 34201476 46079975 38919911 15229124 62524640 TRUE FALSE FALSE 26174332.64 19414858.63 9396809.254 57304435.51 14904959.07 29982045.63 34550277.87 30058696.88 16549196.73 46868063.18 0.558468408 0.414244953 0.200494934 1.222675562 0.318019522 0.639711641 0.737181687 0.64134711 0.353101784 1 25.48210184 -11.59662523 2.097629815 8.649016955 0.571453309 0.187660278 0.271201038 8465883.501 338915.6325 309624316.6 0.067007427 2.53E-12 11.59662523 -8.077563646 DDSLDLS(ph)PQGR ddPTM_HeLa_A485_30min_R1 2 DDSLDLSPQGR 11 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 DDSLDLS(1)PQGR;DDS(0.001)LDLS(0.999)PQGR ; 162.65 6.73E-08 674890000 619160 697360 530270 709830 823140 687550 911480 1063430 637390 946060 TRUE FALSE FALSE 756890.0059 778910.1858 726438.9394 748606.2155 741185.2914 723549.0548 716734.8519 802622.1251 765308.3265 710224.6529 1.065705059 1.096709587 1.0228298 1.054041439 1.04359274 1.018760827 1.009166394 1.130096121 1.077558098 1 19.43791591 -9.827549639 7.041218813 1 1.056781679 0.192193516 0.035394236 2.20E-10 9.72E-20 0.036253526 0.008792772 1.49E-10 9.827549639 0.05678168 DDSLDLS(ph)PQGR ddPTM_HeLa_A486_30min_R1 2 DDSLDLSPQGR 11 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 DDS(0.006)LDLS(0.994)PQGR;DDSLDLS(1)PQGR ; 174.89 1.53E-08 840190000 968960 1145960 797690 464760 1119930 1072050 1302570 1213990 907020 1265910 TRUE FALSE FALSE 901040.9077 1055149.956 1106576.931 1081984.768 979457.9365 939791.3708 976653.2088 937590.9782 985641.2239 948917.8963 0.9495457 1.111950739 1.166146128 1.140230121 1.03218407 0.990382176 1.029228359 0.988063332 1.038700216 1 19.85592374 -5.919761352 6.175162352 1.009917352 1.098275815 0.329700791 0.055552526 0.242540649 14.71572528 0.017992874 0.02044971 1.20E-06 5.919761352 0.088358463 DDTSRYDERPGPS(ph)PLPHR ddPTM_HeLa_A485_30min_R1 3 DDTSRYDERPGPSPLPHR 18 2 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 DDTSRYDERPGPS(1)PLPHR;DDTSRYDERPGPS(1)PLPHR;DDTSRYDERPGPS(0.999)PLPHR ;; 186.62 2.93E-18 11399200000 840075 2109924 1321191 391080 2128366 2122650 2472230 4119410 1156788 772100 TRUE FALSE FALSE 1026946.786 2356661.258 1809954.53 412443.7101 1916458.408 2233788.672 1944017.864 3109118.239 1388944.741 579629.6794 1.771729126 4.065805016 3.122604991 0.711564167 3.306349685 3.85382038 3.353896347 5.363973497 2.396262286 1 19.14477194 -5.974397504 24.99745262 3.487884375 2.51383971 0.056487221 1.327813862 521.3592707 509035.9283 0.40344021 0.457443573 1.06E-06 5.974397504 -0.974044665 DDTSRYDERPGPS(ph)PLPHR ddPTM_HeLa_A486_30min_R1 4 DDTSRYDERPGPSPLPHR 18 2 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 DDTSRYDERPGPS(1)PLPHR;DDTSRYDERPGPS(1)PLPHR;DDTSRYDERPGPS(1)PLPHR;DDT(0.001)S(0.001)RYDERPGPS(0.999)PLPHR ;;; 165.85 1.86E-12 6077570000 2965720 2001219 2030410 982371 4001830 1590002 2817810 3269970 1354669 2995200 TRUE FALSE FALSE 2757838.343 1842635.118 2816639.128 2287009.334 3499883.166 1393843.719 2112764.134 2525469.214 1472092.8 2245182.425 1.228335975 0.820706192 1.254525734 1.018629626 1.558841334 0.620815353 0.941021144 1.124839205 0.655667345 1 21.09840124 -6.282487941 24.99979293 0.880805632 1.152054418 0.315768471 0.224734644 1150.851007 1366884.122 0.077327613 0.068260589 5.22E-07 6.282487941 0.271248786 DDTSRYDERPGPS(ph)PLPHRDR ddPTM_HeLa_A485_30min_R1 2 DDTSRYDERPGPSPLPHRDR 20 3 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 DDTSRYDERPGPS(1)PLPHRDR;DDTSRYDERPGPS(0.999)PLPHRDR ; 135.62 2.36E-07 1097460000 125146 782070 274736 42262 434220 845940 865660 2673430 223451 77704 TRUE FALSE FALSE 152984.296 873526.2834 376372.2791 44570.66605 390987.5322 890232.1103 680704.6692 2017767.101 268295.5661 58333.82284 2.622565923 14.97461063 6.452042071 0.764062149 6.702587164 15.26099383 11.66912498 34.59000289 4.599313966 1 15.832045 -6.047633169 23.72113537 10 6.458306346 0.072971132 9.300346691 1082.461092 539058.0302 3.247897734 3.248023851 8.96E-07 6.047633169 -3.541693654 DDWEEKR ddPTM_HeLa_A485_30min_R1 1 DDWEEKR 7 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 100.15 0.010963 163570000 77147 79816 51027 108030 92811 90991 120770 130340 67272 146550 FALSE FALSE TRUE 94308.084 89149.78689 69904.01071 113931.4054 83570.41096 95755.14806 94966.5029 98373.91063 80772.87334 110017.7821 0.857207646 0.810321616 0.635388293 1.035572643 0.759608214 0.870360648 0.863192305 0.894163732 0.734180165 1 16.7473772 -11.19446999 2.22357274 1.457855649 0.830840977 0.204664806 0.101127971 7955427.396 1668959.41 18311388.7 0.024550568 6.39E-12 11.19446999 -0.627014671 DDYSRDDYRR ddPTM_HeLa_A485_30min_R1 3 DDYSRDDYRR 10 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;; ;; 81.475 0.0054815 1483890000 935690 1872350 1307680 650570 2276980 2088650 2499650 3665860 1188390 1074410 FALSE FALSE TRUE 1143831.012 2091305.045 1791445.249 686108.9918 2050275.876 2198008.484 1965579.357 2766802.087 1426888.972 806579.3601 1.418125815 2.592807539 2.221040282 0.850640403 2.541939427 2.725098847 2.436932377 3.430291208 1.769062095 1 19.62145696 DDYSRDDYRR ddPTM_HeLa_A486_30min_R1 1 DDYSRDDYRR 10 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 60.598 0.023578 149350000 277800 201470 200040 102570 358770 190410 278740 332580 138390 264480 FALSE FALSE TRUE 258327.6546 185504.7835 277500.8453 238788.1436 313769.7212 166919.1501 208996.3038 256858.7942 150385.7566 198252.4865 1.303023529 0.935699656 1.399734501 1.20446481 1.582677356 0.841952366 1.054192598 1.29561449 0.758556724 1 17.59697944 -6.283772623 24.98297852 1.012547244 1.267594422 0.343740656 0.201932092 1090.388045 1219753.608 0.070503462 0.062225484 5.20E-07 6.283772623 0.255047178 DEALQNIS(ph)ADDLPDSASQAAHPQDSAFSYR ddPTM_HeLa_A485_30min_R1 1 DEALQNISADDLPDSASQAAHPQDSAFSYR 30 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;F8W9S7;Q14C86-4 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 DEALQNIS(1)ADDLPDSASQAAHPQDSAFSYR 195.96 5.59E-22 1024100000 155950 113610 82836 250350 144280 176250 218220 233310 133400 281130 TRUE FALSE FALSE 190640.5395 126895.7012 113480.4835 264025.9866 129914.9766 185478.1775 171595.5143 176090.3567 160172.1564 211049.4648 0.903297905 0.601260474 0.537696144 1.251014717 0.615566482 0.878837469 0.813058277 0.834355855 0.758931829 1 17.68722165 -14 0.138964715 1.655877057 0.727436704 0.086159276 0.191641094 365.2504854 3.115499565 67.19508242 1.195581803 1.00E-14 14 -0.928440353 DEALQNIS(ph)ADDLPDSASQAAHPQDSAFSYR ddPTM_HeLa_A486_30min_R1 2 DEALQNISADDLPDSASQAAHPQDSAFSYR 30 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;F8W9S7;Q14C86-4 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 DEALQNIS(1)ADDLPDSASQAAHPQDSAFSYR;DEALQNIS(1)ADDLPDSASQAAHPQDSAFSYR ; 341.99 7.25E-128 1925010000 556110 542350 401240 106837 512280 544940 565250 614680 411050 582290 TRUE FALSE FALSE 517129.5608 499372.2108 556610.8736 248721.9352 448025.0656 477710.8433 423818.4714 474730.7824 446680.145 436480.7939 1.184770482 1.144087478 1.275224205 0.569834776 1.026448521 1.094460169 0.970989966 1.087632695 1.023367239 1 18.73555865 DEAQNEGPATESEAPLKEDGLLPKPLS(ph)SGGEEEEKPR ddPTM_HeLa_A485_30min_R1 2 DEAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPR 37 3 Q8N163-2;Q8N163;G3V119;H0YB24 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 DEAQNEGPATESEAPLKEDGLLPKPLS(0.817)S(0.183)GGEEEEKPR;DEAQNEGPATESEAPLKEDGLLPKPLS(0.5)S(0.5)GGEEEEKPR ; 240.15 2.07E-51 446230000 93989 42051 12880 187730 62844 77768 143950 118570 52291 273360 TRUE FALSE FALSE 114896.5288 46968.49865 17644.84798 197985.2145 56587.0307 81839.81223 113193.9065 89490.52159 62785.32406 205216.3828 0.559879904 0.228873046 0.085981673 0.964763202 0.275743242 0.398797655 0.551583187 0.436078837 0.305946939 1 17.64678638 -10.02098353 4.017235547 1.000065551 0.422493056 0.367219295 0.227198039 157690291.9 302799805.3 144286.3939 0.054544561 9.53E-11 10.02098353 -0.577572495 DEAQNEGPATESEAPLKEDGLLPKPLS(ph)SGGEEEEKPR ddPTM_HeLa_A486_30min_R1 1 DEAQNEGPATESEAPLKEDGLLPKPLSSGGEEEEKPR 37 3 Q8N163-2;Q8N163;G3V119;H0YB24 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 DEAQNEGPATESEAPLKEDGLLPKPLS(0.949)S(0.051)GGEEEEKPR 138.24 4.87E-07 145110000 85713 75147 25914 67994 58775 111500 176370 128180 58004 243690 TRUE FALSE FALSE 79704.96132 69192.07804 35948.5948 158293.4682 51402.89144 97744.26365 132240.3605 98996.21215 63031.83342 182668.4378 0.436336798 0.378785076 0.196796968 0.866561679 0.281399962 0.535091145 0.72393656 0.541944812 0.345061436 1 17.47886786 -14 0.191988542 3.183434569 0.39458459 0.396473022 0.191969826 142.9028208 1.401154402 119.8868656 0.507380913 1.00E-14 14 -2.788849979 DEAS(ph)SVTR ddPTM_HeLa_A486_30min_R1 1 DEASSVTR 8 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DEAS(0.771)S(0.229)VTR 107.79 0.0013277 529950000 832250 736370 471950 206000 483950 665810 593750 560860 576290 953740 TRUE FALSE FALSE 773913.5727 678017.3594 654701.6793 479578.4107 423248.4783 583669.1317 445187.47 433164.4215 626243.2812 714917.2962 1.08252182 0.948385727 0.915772611 0.670816629 0.592024393 0.816414898 0.622711847 0.605894449 0.875966052 1 19.44741683 -5.010196378 2.421121161 0.716697482 1.023245245 0.428642639 0.128417072 0.24650206 2.863853827 0.035061532 0.083682599 9.77E-06 5.010196378 0.306547764 DEASS(ph)VTR ddPTM_HeLa_A485_30min_R1 2 DEASSVTR 8 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DEAS(0.005)S(0.995)VTR;DEAS(0.002)S(0.998)VTR ; 151.22 0.0002157 2494800000 2391100 3210700 1834230 1973400 1774530 2366200 2444600 2597400 1703450 2185970 TRUE FALSE FALSE 2922991.946 3586163.436 2512788.006 2081201.845 1597851.562 2490090.573 1922291.239 1960383.577 2045316.79 1641047.909 1.781174047 2.18528869 1.531209413 1.268215165 0.973677584 1.517378353 1.171380329 1.194592533 1.246348007 1 20.64618593 -4.999368617 3.190564297 1.209955146 1.98098087 0.767676737 0.171664997 0.10502133 2.211500716 0.045394081 0.099040384 1.00E-05 4.999368617 0.771025724 DEASS(ph)VTR ddPTM_HeLa_A486_30min_R1 3 DEASSVTR 8 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DEAS(0.011)S(0.989)VTR;DEAS(0.003)S(0.997)VTR;DEAS(0.023)S(0.977)VTR ;; 147.75 0.0002844 2238990000 3996800 3612500 1997130 981600 2366910 2972860 3048680 2670460 2699560 4517000 TRUE FALSE FALSE 3716644.959 3326232.344 2770472.221 2285214.407 2070030.077 2606098.759 2285868.018 2062454.554 2933560.034 3385913.799 1.097678553 0.982373604 0.818234717 0.67491807 0.611365262 0.769688454 0.675111109 0.609127898 0.866401275 1 21.69111381 -4.73761708 2.146890623 0.7206736 1.088348266 0.510783301 0.114863905 0.237483071 2.072900719 0.030232115 0.115866878 1.83E-05 4.73761708 0.367674665 DEDEGIPS(ph)ENEEEKK ddPTM_HeLa_A485_30min_R1 1 DEDEGIPSENEEEKK 15 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 DEDEGIPS(1)ENEEEKK 85.496 0.00098277 469840000 378450 229130 96826 772260 246010 315300 499230 372620 163160 941860 TRUE FALSE FALSE 462634.8969 255924.7603 132645.9667 814446.6083 221516.3806 331808.6205 392565.4322 281234.3608 195904.7154 707071.6356 0.654297066 0.361950257 0.187599049 1.151858691 0.313287041 0.469271576 0.555198954 0.397745216 0.277064877 1 19.43149686 -11.02127489 2.810895268 1.589294344 0.48652144 0.264594358 0.257385408 117614482 67737180.05 446655767.5 0.064840966 9.52E-12 11.02127489 -1.102772904 DEDGES(ph)GGQRS(ph)EAEEGEVR ddPTM_HeLa_A485_30min_R1 2 DEDGESGGQRSEAEEGEVR 19 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 2 0 DEDGES(1)GGQRS(1)EAEEGEVR;DEDGES(1)GGQRS(1)EAEEGEVR ; 101.45 1.35E-05 675260000 981990 993300 692160 1157460 792680 860820 1060760 1036260 754730 1523960 TRUE FALSE FALSE 1200430.288 1109457.794 948218.7872 1220689.109 713757.9959 905891.2041 834119.9604 782115.6102 906197.3882 1144064.818 1.049267724 0.969750819 0.828815616 1.06697548 0.623878983 0.791818077 0.72908453 0.683628757 0.792085705 1 20.12573736 -5.756570384 24.99992882 0.753300975 0.96735681 0.45622171 0.110395523 104.9055781 538635.6659 0.031281395 0.039092353 1.75E-06 5.756570384 0.214055834 DEDGES(ph)GGQRS(ph)EAEEGEVR ddPTM_HeLa_A486_30min_R1 1 DEDGESGGQRSEAEEGEVR 19 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 2 0 DEDGES(1)GGQRS(1)EAEEGEVR 76.439 0.0040205 1107600000 538460 594160 324670 210350 423470 523700 614550 492400 489520 751010 TRUE FALSE FALSE 500716.7346 547076.5977 450390.919 489705.4305 370354.4439 459091.2186 460783.09 380291.269 531951.9877 562952.2077 0.889448034 0.971799364 0.800051786 0.869888107 0.657879015 0.81550656 0.818511916 0.675530292 0.944932768 1 19.10265292 -4.771435751 24.93287787 0.80657917 0.9306237 0.137526704 0.101736167 266.7824715 665411.8929 0.02504185 0.053130754 1.69E-05 4.771435751 0.12404453 DEDGESGGQRS(ph)EAEEGEVR ddPTM_HeLa_A485_30min_R1 1 DEDGESGGQRSEAEEGEVR 19 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 DEDGES(0.011)GGQRS(0.989)EAEEGEVR 130.83 1.79E-06 798300000 62094 55200 55263 82781 66967 59711 78257 74657 60480 109090 TRUE FALSE FALSE 75906.59608 61655.15982 75707.08339 87303.11642 60299.53034 62837.37563 61536.75265 56347.25369 72617.78124 81895.87065 0.926867197 0.752848212 0.924431022 1.066025866 0.736295125 0.76728381 0.751402386 0.688035346 0.886708703 1 16.32150309 -5.815616852 24.999943 0.784794828 0.906274986 0.186753663 0.10938469 140.5800012 64869.03123 0.033632849 0.038136097 1.53E-06 5.815616852 0.121480158 DEDGESGGQRS(ph)EAEEGEVR ddPTM_HeLa_A486_30min_R1 2 DEDGESGGQRSEAEEGEVR 19 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 DEDGES(0.004)GGQRS(0.996)EAEEGEVR;DEDGESGGQRS(1)EAEEGEVR ; 210.16 2.92E-26 928580000 349730 417080 291710 154107 398940 455810 480760 444760 379730 475160 TRUE FALSE FALSE 325215.733 384029.0618 404667.9243 358768.8841 348901.2252 399576.7965 360468.763 343497.857 412645.3021 356176.8432 0.91307377 1.078197724 1.136143273 1.007277399 0.979573018 1.121849452 1.012049969 0.964402553 1.158540512 1 18.4422342 -4.253979156 24.47882984 1.049856168 0.913073682 0.28333782 0.065737333 921.0891873 3022222.69 0.016093039 0.163807651 5.57E-05 4.253979156 -0.136782486 DEDHIAHIIELLGS(ph)IPR ddPTM_HeLa_A485_30min_R1 1 DEDHIAHIIELLGSIPR 17 0 P78362;P78362-2;F8WBW4;H7C521 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 DEDHIAHIIELLGS(1)IPR 64.679 0.01103 25961000 8783.9 7939.1 6283.8 12462 10698 11614 15711 14847 6671.7 15507 TRUE FALSE FALSE 10737.84825 8867.508684 8608.439111 13142.7675 9632.869557 12222.09108 12354.2165 11205.74997 8010.648994 11641.39029 0.922385384 0.76172248 0.739468302 1.128968893 0.82746728 1.049882427 1.061232052 0.962578326 0.688117896 1 13.50697574 -5.233539378 24.90469619 0.960662566 0.803245094 0.232212728 0.126475357 1020.645294 911068.9384 0.0340697 0.058993837 5.84E-06 5.233539378 -0.157417472 DEDMLYS(ph)PELAQR ddPTM_HeLa_A485_30min_R1 4 DEDMLYSPELAQR 13 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR ;;; 302.73 5.38E-58 2389450000 1528590 1525870 1375080 1859180 2038050 1431310 1940620 1675690 1457500 2269570 TRUE FALSE FALSE 1868619.572 1704307.223 1883779.314 1960742.296 1835134.586 1506251.178 1525990.684 1264724.4 1750006.881 1703807.967 1.096731326 1.000293024 1.105628891 1.150800051 1.077078298 0.88404985 0.895635373 0.742292808 1.027115094 1 20.70033131 -6.250994398 8.114007115 0.892708094 1.086241285 0.542070572 0.080251413 0.114732986 61.22853759 0.026536127 0.025498256 5.61E-07 6.250994398 0.193533191 DEDMLYS(ph)PELAQR ddPTM_HeLa_A486_30min_R1 4 DEDMLYSPELAQR 13 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR ;;; 346.54 1.61E-94 2682540000 1164510 1533990 1044370 594704 1492600 1458610 1664100 1612740 1199790 1693520 TRUE FALSE FALSE 1082883.863 1412431.046 1448778.033 1384500.967 1305384.19 1278661.528 1247724.579 1245554.308 1303788.763 1269451.569 0.853032828 1.112630903 1.141262943 1.090629214 1.028305626 1.007255069 0.982884743 0.98117513 1.027048841 1 20.27577392 -6.08539723 3.23665824 0.997429352 1.060380581 0.082037982 0.074003196 0.562026602 11.31796245 0.026058855 0.026817442 8.21E-07 6.08539723 0.06295123 DEEGES(ph)GAEEGPDLEEPGAGYKK ddPTM_HeLa_A485_30min_R1 1 DEEGESGAEEGPDLEEPGAGYKK 23 1 Q9UQL6-2;Q9UQL6;Q9UQL6-3 Q9UQL6-2 HDAC5 Histone deacetylase 5 1 0 DEEGES(1)GAEEGPDLEEPGAGYKK 197.08 7.17E-29 227870000 110000 77611 41926 183810 68629 105830 186740 160430 71325 210670 TRUE FALSE FALSE 134469.1205 86686.93132 57436.17209 193851.0749 61796.05579 111371.0952 146841.4735 121084.291 85639.27327 158153.8461 0.850242494 0.548117757 0.363166458 1.22571205 0.390733816 0.704194668 0.928472352 0.765610789 0.54149346 1 17.27096912 -14 0.268809966 2.988750158 0.681474171 0.107990973 0.248568909 487.5763634 4.750888291 539.0037692 0.304785951 1.00E-14 14 -2.307275986 DEEGES(ph)GAEEGPDLEEPGAGYKK ddPTM_HeLa_A486_30min_R1 1 DEEGESGAEEGPDLEEPGAGYKK 23 1 Q9UQL6-2;Q9UQL6;Q9UQL6-3 Q9UQL6-2 HDAC5 Histone deacetylase 5 1 0 DEEGES(1)GAEEGPDLEEPGAGYKK 146.15 1.11E-09 244040000 146010 126090 56276 60697 110040 151350 174810 156500 98312 248790 TRUE FALSE FALSE 135775.453 116098.1692 78067.57432 141305.6835 96237.75712 132677.9758 131070.689 120868.3664 106833.7633 186491.3646 0.728052225 0.622539115 0.418612274 0.757706308 0.516044039 0.711442999 0.702824441 0.648117765 0.572861717 1 17.5087493 -11.23265589 2.303277523 2.271696664 0.629761455 0.552775505 0.099590846 5439679.966 947043.3186 36061474.81 0.024946162 5.85E-12 11.23265589 -1.641935209 DEEHILSGR ddPTM_HeLa_A485_30min_R1 1 DEEHILSGR 9 0 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-3;Q8IXQ4-2 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 0 0 101.64 0.005777 179640000 88648 112490 117710 95581 130300 117020 140690 154200 117410 131070 FALSE FALSE TRUE 108367.4418 125644.727 161255.8273 100802.348 117326.8745 123146.9863 110630.4322 116382.2082 140973.1101 98396.66116 1.10133251 1.276920634 1.638834341 1.024448867 1.192386745 1.251536229 1.12433116 1.182786152 1.432702171 1 16.58632174 DEEPSGWEEPS(ph)PQSISR ddPTM_HeLa_A485_30min_R1 2 DEEPSGWEEPSPQSISR 17 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 DEEPSGWEEPS(1)PQSISR;DEEPSGWEEPS(1)PQSISR ; 369.65 1.30E-119 982650000 383760 464840 303020 452870 393580 420710 485660 442140 314140 496690 TRUE FALSE FALSE 469126.088 519198.9944 415119.7077 477609.1414 354393.7933 442737.7251 381894.7735 333704.4718 377185.0165 372874.3239 1.258134599 1.392423562 1.113296575 1.280885035 0.950437642 1.187364473 1.024191662 0.894951597 1.011560712 1 18.50832993 -5.527023667 0.573266112 0.966163481 1.363513782 0.589349818 0.098808227 0.810457361 0.496291089 0.066443269 0.181509757 2.97E-06 5.527023667 0.397350301 DEEPSGWEEPS(ph)PQSISR ddPTM_HeLa_A486_30min_R1 3 DEEPSGWEEPSPQSISR 17 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 DEEPSGWEEPS(1)PQSISR;DEEPSGWEEPS(1)PQSISR;DEEPSGWEEPS(1)PQSISR ;; 446.84 6.93E-272 1257680000 908440 956540 552050 272852 701270 820190 911890 800460 683930 1136110 TRUE FALSE FALSE 844763.0472 880740.2867 765818.5444 635213.2452 613310.1775 719003.2969 683725.477 618212.7319 743213.6031 851620.6612 0.991947572 1.034193188 0.899248432 0.745887546 0.720168269 0.844276483 0.802852148 0.725925004 0.872704993 1 19.69985143 -4.971887538 3.817381227 0.801666324 1.010705637 0.487581642 0.079383589 0.156568195 4.986023864 0.020461752 0.044181849 1.07E-05 4.971887538 0.209039313 DEESTRS(ph)EEVTR ddPTM_HeLa_A485_30min_R1 1 DEESTRSEEVTR 12 1 C9JYK5;J3QTA2;Q99933-4;Q99933-3;Q99933-2;Q99933;A0A0U1RQD7;F1LLU6 C9JYK5 BAG1 BAG family molecular chaperone regulator 1 1 0 DEES(0.007)T(0.006)RS(0.869)EEVT(0.118)R 71.781 0.0023608 0 75145 96183 84478 120900 113380 106340 118420 126620 80955 147540 TRUE FALSE FALSE 91860.746 107430.7652 115729.9276 127504.4609 102091.4891 111907.798 93118.5996 95566.24647 97201.92594 110760.9933 0.829360078 0.969933205 1.044861771 1.151167546 0.921727822 1.010353868 0.840716545 0.862815001 0.877582649 1 16.75709037 -6.752798107 24.99586603 0.883846463 0.994086522 0.206330392 0.087352488 266.0085856 769461.8829 0.034887482 0.026589397 1.77E-07 6.752798107 0.110240059 DEESTRS(ph)EEVTR ddPTM_HeLa_A486_30min_R1 1 DEESTRSEEVTR 12 1 C9JYK5;J3QTA2;Q99933-4;Q99933-3;Q99933-2;Q99933;A0A0U1RQD7;F1LLU6 C9JYK5 BAG1 BAG family molecular chaperone regulator 1 1 0 DEES(0.004)T(0.019)RS(0.977)EEVTR 169.37 7.86E-11 214050000 155600 162710 117640 55297 153260 187220 199990 167710 140990 210590 TRUE FALSE FALSE 144693.2435 149816.267 163193.3585 128734.2106 134036.7017 164122.6999 149950.3867 129526.0941 153211.1267 157856.8933 0.916610232 0.949063825 1.033805715 0.815512125 0.84910262 1.039692955 0.949913454 0.82052859 0.970569758 1 17.26825774 -8.855335679 14.6259239 0.999978796 0.926235797 0.077136188 0.075476479 0 0 0.074518327 0.018073349 1.40E-09 8.855335679 -0.073742998 DEEVHAGLGELLR ddPTM_HeLa_A485_30min_R1 5 DEEVHAGLGELLR 13 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PQ34 P50454 SERPINH1 Serpin H1 0 0 ;;;; ;;;; 169.04 1.78E-11 412757000 745054 921455 676202 758363 758795 793548 912671 917733 675396 929796 FALSE FALSE TRUE 910788.6919 1029211.147 926357.2589 799790.4504 683246.7055 835096.9462 717671.385 692657.5428 810941.7821 698014.9688 1.304826877 1.474482916 1.327130936 1.145807019 0.978842483 1.196388306 1.028160451 0.992324769 1.161782796 1 19.41289845 -5.285016021 2.839503191 1.064339172 1.391222521 0.758560455 0.078193601 0.119790117 1.93109386 0.021910007 0.038086959 5.19E-06 5.285016021 0.326883349 DEEVHAGLGELLR ddPTM_HeLa_A486_30min_R1 4 DEEVHAGLGELLR 13 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PQ34 P50454 SERPINH1 Serpin H1 0 0 ;;; ;;; 138.77 1.78E-05 290491000 530784 547294 324371 162130 504358 479691 503904 460012 415575 620392 FALSE FALSE TRUE 493578.7826 503924.4302 449976.1382 377446.8336 441096.7167 420511.6016 377821.8894 355277.3096 451597.3756 465041.8051 1.061364327 1.083611032 0.967603629 0.811640651 0.948509815 0.90424473 0.812447151 0.763968541 0.971089847 1 18.82700089 -4.961205817 3.731440263 0.877753732 1.070643934 0.509283319 0.071847858 0.163968302 4.854331871 0.019318208 0.042377129 1.09E-05 4.961205817 0.192890202 DEGAVISQISDISNRDGHAT(ph)DEEK ddPTM_HeLa_A485_30min_R1 1 DEGAVISQISDISNRDGHATDEEK 24 1 O75410-2;H0YAY0;O75410;O75410-9;O75410-7;O75410-3;E7ET87;E7EVI4;R4GMT7;E5RFM9;A0A0C4DGD5;A0A0C4DGD3;H0YBT8;O75410-4;O75410-5;O75410-10;O75410-6 O75410-2 TACC1 Transforming acidic coiled-coil-containing protein 1 1 0 DEGAVIS(0.001)QIS(0.047)DIS(0.014)NRDGHAT(0.938)DEEK 57.351 0.030597 94338000 20700 28601 28326 16835 32048 27291 32470 35633 24899 23517 TRUE FALSE FALSE 25304.64359 31945.63815 38804.96614 17754.65342 28857.18859 28719.91456 25532.51924 26893.95088 29896.00091 17654.6447 1.43331367 1.809474997 2.198003234 1.005664726 1.634538054 1.626762535 1.446221076 1.523335719 1.693378792 1 14.10776017 -11.81376978 0.243847354 1.09E-13 1.672903193 0.274505229 0.287972637 71.97767619 1.856004517 38.59477452 0.470269749 1.54E-12 11.81376978 1.672903193 DEGGWRR ddPTM_HeLa_A486_30min_R1 1 DEGGWRR 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 60.76 0.011825 0 10366 8734.1 10049 4476.5 11307 10224 12475 11157 11180 9642.7 FALSE FALSE TRUE 9639.39693 8041.978107 13940.24192 10421.51823 9888.770626 8962.66683 9353.623053 8616.794656 12149.0914 7228.105157 1.333599432 1.112598383 1.928616369 1.44180501 1.368099995 1.239974604 1.294062946 1.192123588 1.680812763 1 12.81940178 -5.921949731 3.599817943 1.294814174 1.462667622 0.096793533 0.246261293 0.63121676 16.27797804 0.080621183 0.091648388 1.20E-06 5.921949731 0.167853448 DEILPT(ph)TPISEQK ddPTM_HeLa_A486_30min_R1 1 DEILPTTPISEQK 13 0 E9PPU1;H0YEU2;E9PL09;P23396;P23396-2;E9PSF4 E9PPU1 RPS3 40S ribosomal protein S3 1 0 DEILPT(0.648)T(0.351)PIS(0.001)EQK 88.087 0.0086157 201350000 525530 544880 465910 229710 440250 544100 690870 571900 430130 699780 TRUE FALSE FALSE 488693.0608 501701.7244 646322.8295 534776.4889 385029.7398 476974.474 518007.0187 441690.8545 467414.0147 524550.5332 0.931641529 0.956441167 1.232145978 1.019494701 0.734018394 0.909301285 0.987525483 0.842036804 0.891075283 1 19.00072224 -5.549555002 24.9641365 0.89019305 1.047397372 0.313779173 0.102181756 246.3152627 230505.0329 0.030807149 0.039772817 2.82E-06 5.549555002 0.157204322 DEILPTT(ph)PISEQK ddPTM_HeLa_A485_30min_R1 7 DEILPTTPISEQK 13 0 E9PPU1;H0YEU2;E9PL09;P23396;P23396-2;E9PSF4 E9PPU1 RPS3 40S ribosomal protein S3 1 0 DEILPT(0.208)T(0.792)PISEQK;DEILPT(0.001)T(0.999)PISEQK;DEILPT(0.062)T(0.938)PISEQK;DEILPT(0.207)T(0.793)PISEQK;DEILPT(0.183)T(0.817)PISEQK;DEILPT(0.205)T(0.795)PISEQK;DEILPT(0.289)T(0.711)PISEQK ;;;;;; 333.59 2.84E-80 29862130000 6055200 4602660 3554380 8516860 6385010 5354690 8813480 7225990 4478060 10469700 TRUE FALSE FALSE 7402158.35 5140901.049 4869293.072 8982114.496 5749295.985 5635053.288 6930407.998 5453804.623 5376765.567 7859796.471 0.941774813 0.654075595 0.619518977 1.14279225 0.731481535 0.716946464 0.88175413 0.69388624 0.68408458 1 22.90606052 -4.211354566 21.77096621 0.786249989 0.941778615 0.073114601 0.159365365 23209.27982 10087251.74 0.039131414 23.64944381 6.15E-05 4.211354566 0.155528627 DEILPTT(ph)PISEQK ddPTM_HeLa_A486_30min_R1 7 DEILPTTPISEQK 13 0 E9PPU1;H0YEU2;E9PL09;P23396;P23396-2;E9PSF4 E9PPU1 RPS3 40S ribosomal protein S3 1 0 DEILPT(0.021)T(0.978)PIS(0.002)EQK;DEILPT(0.206)T(0.794)PISEQK;DEILPT(0.004)T(0.996)PISEQK;DEILPT(0.002)T(0.998)PISEQK;DEILPT(0.207)T(0.793)PISEQK;DEILPT(0.183)T(0.817)PISEQK;DEILPT(0.018)T(0.982)PISEQK ;;;;;; 323.59 2.35E-68 36767270000 13580110 13405760 6488780 6423280 11475450 14886690 18495520 17311790 10185330 19309200 TRUE FALSE FALSE 12628214.42 12343438.75 9001409.392 14953720.45 10036092.06 13050121.54 13867745.27 13370273.33 11068202.61 14474050.64 0.872472726 0.852797815 0.621899813 1.033139985 0.69338517 0.901621935 0.958110871 0.923740953 0.76469282 1 23.78696539 -6.479544314 24.82759461 0.908793533 0.816196542 0.142094809 0.11668086 896.4820485 513621.873 0.039495676 0.034829421 3.31E-07 6.479544314 -0.09259699 DEKKEES(ph)EES(ph)DDDMGFGLFD ddPTM_HeLa_A486_30min_R1 4 DEKKEESEESDDDMGFGLFD 20 2 P05387;H0YDD8 P05387 RPLP2 60S acidic ribosomal protein P2 2 0 DEKKEES(1)EES(1)DDDMGFGLFD;DEKKEES(1)EES(1)DDDMGFGLFD;DEKKEES(1)EES(1)DDDMGFGLFD;DEKKEES(1)EES(1)DDDMGFGLFD ;;; 84.68 0.004028 274679000 196066 168322 68668 457184 190254 252290 515615 461874 121625 602247 TRUE FALSE FALSE 182322.7859 154983.5517 95258.08859 1064347.457 166390.5693 221165.0249 386602.6734 356715.3728 132167.5529 451440.4312 0.403868979 0.343308975 0.21100921 2.357669768 0.368577021 0.489909653 0.856375829 0.790171522 0.292768533 1 18.78417611 DELADEIANS(ph)SGKGALALEEK ddPTM_HeLa_A485_30min_R1 1 DELADEIANSSGKGALALEEK 21 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.5)S(0.5)GKGALALEEK 74.525 0.0022986 205440000 76019 61974 40854 122440 73916 80466 109570 119320 59896 142490 TRUE FALSE FALSE 92929.16429 69221.3202 55967.59468 129128.5872 66556.66351 84679.07534 86159.4744 90056.58291 71916.5778 106969.8653 0.868741528 0.647110473 0.523208985 1.207149198 0.622200124 0.791616172 0.805455575 0.84188741 0.672306893 1 16.7068449 -10.75885571 2.769410936 1.048099582 0.775813442 0.125900929 0.1774442 432267615.7 346770558.8 142018930.7 0.042794486 1.74E-11 10.75885571 -0.27228614 DELADEIANS(ph)SGKGALALEEK ddPTM_HeLa_A486_30min_R1 1 DELADEIANSSGKGALALEEK 21 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.637)S(0.363)GKGALALEEK 193.53 4.51E-20 233640000 245480 218260 80373 169350 184930 334770 421590 327560 177120 495970 TRUE FALSE FALSE 228273.1197 200964.2827 111495.5781 394255.3585 161734.355 293469.4811 316103.7229 252981.7386 192472.9042 371775.8838 0.614007335 0.540552229 0.299899974 1.060465123 0.435031862 0.789372022 0.850253437 0.680468394 0.517712183 1 18.50407366 -5.241305381 24.97954405 0.739793153 0.490393121 0.290597182 0.196214331 1128.539192 1400137.19 0.051241064 0.088610912 5.74E-06 5.241305381 -0.249400032 DELADEIANS(ph)SGKGALALEEKR ddPTM_HeLa_A485_30min_R1 1 DELADEIANSSGKGALALEEKR 22 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.572)S(0.428)GKGALALEEKR 191.44 3.08E-20 387570000 506050 416000 219100 603780 497230 604110 1031400 1096700 326330 824780 TRUE FALSE FALSE 618619.0766 464647.5813 300154.2075 636762.9725 447724.0353 635740.2655 811032.9642 827732.6054 391821.4377 619177.525 0.99909808 0.750427079 0.484762763 1.028401302 0.723094779 1.026749583 1.309855302 1.336825986 0.632809529 1 19.23999358 -6.38370334 4.785921492 1.106215837 0.790959346 0.241458676 0.230450125 0.301763982 10.51616041 0.083215535 0.072726345 4.13E-07 6.38370334 -0.315256491 DELADEIANS(ph)SGKGALALEEKR ddPTM_HeLa_A486_30min_R1 1 DELADEIANSSGKGALALEEKR 22 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.724)S(0.276)GKGALALEEKR 194.66 1.28E-20 339940000 326850 252240 95674 200360 232260 332330 538020 439980 186240 575940 TRUE FALSE FALSE 303939.5029 232251.5838 132721.535 466448.2056 203127.7851 291330.5035 403401.7054 339806.1587 202383.4332 431720.8753 0.704018546 0.537966999 0.307424409 1.080439312 0.470507211 0.674812177 0.934403983 0.787096891 0.46878306 1 18.71973933 -14 0.091893085 1.980620003 0.422170617 0.166537362 0.220678037 376.741695 2.39193139 73.5965194 4.880005709 1.00E-14 14 -1.558449386 DELADEIANSS(ph)GK ddPTM_HeLa_A485_30min_R1 1 DELADEIANSSGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.026)S(0.974)GK 203.04 1.58E-21 163390000 266530 197260 111510 390120 184980 188750 275110 226390 151190 448580 TRUE FALSE FALSE 325818.679 220327.8411 152762.1893 411431.2678 166562.7417 198632.6581 216330.5011 170867.4975 181532.4462 336757.2615 0.967517902 0.654263074 0.453627009 1.221744309 0.494607721 0.589839273 0.642392981 0.507390685 0.539060228 1 18.36134953 -4.260364253 23.36406885 0.663074297 0.967518122 0.118939709 0.233102095 77.1213914 1675353.886 0.05639878 0.334407848 5.49E-05 4.260364253 0.304443825 DELADEIANSS(ph)GK ddPTM_HeLa_A486_30min_R1 1 DELADEIANSSGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.037)S(0.963)GK 293.42 1.49E-57 198870000 865630 829000 284890 334430 416630 910340 943290 788310 595390 1283200 TRUE FALSE FALSE 804953.8071 763307.0208 395207.0376 778569.9412 364372.3805 798031.5065 707268.8649 608829.0217 646998.8846 961878.3678 0.836856129 0.793558777 0.410870076 0.809426604 0.378813364 0.82965948 0.735299689 0.63295843 0.67264106 1 19.87549495 -10.65465326 2.378971253 1.049223238 0.673259907 0.275483014 0.156607298 6865301.333 5236370.857 2057927.604 0.039535252 2.21E-11 10.65465326 -0.375963331 DELADEIANSS(ph)GKGALALEEKR ddPTM_HeLa_A485_30min_R1 1 DELADEIANSSGKGALALEEKR 22 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.023)S(0.977)GKGALALEEKR 181.24 8.81E-20 444530000 154030 133590 59343 191980 152420 182210 325650 382850 111490 284100 TRUE FALSE FALSE 188293.4421 149212.1884 81296.44517 202467.3813 137244.5296 191750.2338 256072.2172 288955.4372 133865.0204 213279.0985 0.882849953 0.699609992 0.381173991 0.949307188 0.643497326 0.899057785 1.200643753 1.354823043 0.627651848 1 17.70238306 -6.50114147 4.368089298 1.074857433 0.708126064 0.328995277 0.2237672 0.227013848 10.39689106 0.083772223 0.06908712 3.15E-07 6.50114147 -0.366731368 DELADEIANSS(ph)GKGALALEEKR ddPTM_HeLa_A486_30min_R1 1 DELADEIANSSGKGALALEEKR 22 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.033)S(0.967)GKGALALEEKR 189.12 4.39E-20 373490000 330400 229610 83758 167170 228000 284960 432550 412110 170150 483100 TRUE FALSE FALSE 307240.6662 211414.8674 116191.3407 389180.2083 199402.114 249804.5325 324321.415 318281.5493 184898.739 362128.6155 0.848429682 0.583811547 0.320856557 1.074701616 0.550638932 0.689822681 0.895597313 0.878918527 0.510588589 1 18.46614266 -13.99999998 0.139326703 1.974189428 0.604425348 0.134280067 0.21334391 275.9834488 2.357651618 75.14508925 1.323791874 1.00E-14 13.99999998 -1.369764079 DELAELS(ph)EAES(ph)EGDEKPK ddPTM_HeLa_A486_30min_R1 1 DELAELSEAESEGDEKPK 18 1 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 2 0 DELAELS(1)EAES(1)EGDEKPK 51.029 0.0044609 0 169520 141200 42651 147000 90408 203670 280250 208040 102170 434970 TRUE FALSE FALSE 157637.5234 130010.7978 59166.60943 342223.429 79068.18562 178543.2662 210128.4858 160673.8335 111026.1779 326050.6808 0.483475523 0.398744138 0.181464456 1.049601946 0.242502747 0.5475936 0.644465717 0.49278791 0.34051816 1 18.31473671 -10.14236557 3.63225808 1.000372407 0.491194797 0.309852416 0.229692112 128856414.6 220200369.7 590295.775 0.058886116 7.21E-11 10.14236557 -0.509177609 DELHIVEAEAMNYEGS(ph)PIK ddPTM_HeLa_A485_30min_R1 23 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.001)EGS(0.999)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.001)EGS(0.999)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK ;;;;;;;;;;;;;;;;;;;;;; 286.32 3.26E-70 13294011000 5614657.2 3518195.9 2705694.3 9096675 4157850.3 3387219.3 5476656.7 3092414.4 3783038.6 9854381.3 TRUE FALSE FALSE 6863618.324 3929618.306 3706643.215 9593603.321 3743880.125 3564568.865 4306524.256 2333994.92 4542259.747 7397865.398 0.927783618 0.531182726 0.501042262 1.296806958 0.506075729 0.481837486 0.582130659 0.315495727 0.613995998 1 22.81867762 -4.24815074 22.63616136 0.630284114 0.927784366 0.083406954 0.273241107 1495.178303 2546746.956 0.068796416 1.133052484 5.65E-05 4.24815074 0.297500253 DELHIVEAEAMNYEGS(ph)PIK ddPTM_HeLa_A486_30min_R1 24 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.005)EGS(0.995)PIK;DELHIVEAEAMNY(0.009)EGS(0.991)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.078)EGS(0.922)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.079)EGS(0.921)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK ;;;;;;;;;;;;;;;;;;;;;;; 301.93 1.42E-79 17316665600 3089543.03 3481487.47 1456174.7 1691998.5 1989602.4 4079795 3942756.7 3152552.4 3043399.1 5139102 TRUE FALSE FALSE 2872982.018 3205601.724 2020044.542 3939058.017 1740047.915 3576471.373 2956237.271 2434785.038 3307203.384 3852237.409 0.74579568 0.83214023 0.524382152 1.022537709 0.451697995 0.92841406 0.767407861 0.632044389 0.858514944 1 21.87726519 -8.009513209 8.629678084 0.999994227 0.741456529 0.204605649 0.163074053 0.203815149 146.5797327 0.143662639 0.03713731 9.78E-09 8.009513209 -0.258537698 DELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_HeLa_A485_30min_R1 23 DELHIVEAEAMNYEGSPIKVTLATLK 26 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.005)EGS(0.995)PIKVTLATLK;DELHIVEAEAMNY(0.022)EGS(0.977)PIKVTLATLK;DELHIVEAEAMNY(0.143)EGS(0.857)PIKVTLATLK;DELHIVEAEAMNY(0.004)EGS(0.996)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.094)EGS(0.906)PIKVTLATLK;DELHIVEAEAMNY(0.086)EGS(0.897)PIKVT(0.017)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.024)EGS(0.961)PIKVT(0.007)LAT(0.008)LK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.007)EGS(0.993)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.001)EGS(0.998)PIKVT(0.001)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.014)EGS(0.982)PIKVT(0.004)LATLK;DELHIVEAEAMNY(0.468)EGS(0.528)PIKVT(0.003)LATLK;DELHIVEAEAMNY(0.138)EGS(0.833)PIKVT(0.029)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.164)EGS(0.787)PIKVT(0.049)LATLK;DELHIVEAEAMNY(0.165)EGS(0.789)PIKVT(0.045)LATLK ;;;;;;;;;;;;;;;;;;;;;; 440.91 1.07E-229 49712740300 3201484.8 2227815.1 1257389.4 4588931.3 2730718.1 2769413.3 4246588.4 3851120.3 2065538.2 5672820.5 TRUE FALSE FALSE 3913644.049 2488338.697 1722550.063 4839612.997 2458838.218 2914415.498 3339270.097 2906627.008 2480072.771 4258690.75 0.918978221 0.58429664 0.404478786 1.136408648 0.577369516 0.684345417 0.784107204 0.682516571 0.582355685 1 22.02197854 -10.0143467 4.468688153 1.000010318 0.703473319 0.171466196 0.193740731 47866846.58 26817444.98 5042.327226 0.045393526 9.68E-11 10.0143467 -0.296536999 DELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_HeLa_A486_30min_R1 35 DELHIVEAEAMNYEGSPIKVTLATLK 26 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.029)EGS(0.932)PIKVT(0.039)LATLK;DELHIVEAEAMNY(0.002)EGS(0.998)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.001)EGS(0.999)PIKVTLATLK;DELHIVEAEAMNY(0.115)EGS(0.885)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.087)EGS(0.897)PIKVT(0.016)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.082)EGS(0.763)PIKVT(0.155)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.163)EGS(0.793)PIKVT(0.044)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.115)EGS(0.858)PIKVT(0.027)LATLK;DELHIVEAEAMNY(0.04)EGS(0.958)PIKVT(0.002)LATLK;DELHIVEAEAMNY(0.031)EGS(0.937)PIKVT(0.032)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.014)EGS(0.97)PIKVT(0.016)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.009)EGS(0.991)PIKVTLATLK;DELHIVEAEAMNY(0.003)EGS(0.994)PIKVT(0.004)LATLK;DELHIVEAEAMNYEGS(0.999)PIKVT(0.001)LATLK;DELHIVEAEAMNY(0.003)EGS(0.828)PIKVT(0.169)LATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.002)EGS(0.998)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNYEGS(1)PIKVTLATLK;DELHIVEAEAMNY(0.003)EGS(0.997)PIKVTLATLK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 341.99 1.89E-124 48213761000 8046104.8 7771122.6 3080496 5041787.7 5654646.9 10275234.3 12511591.6 10576257.4 6750803.3 14242769.8 TRUE FALSE FALSE 7482114.404 7155310.543 4273346.55 11737536.56 4945388.358 9007580.363 9381059.048 8168274.468 7335968.366 10676287.54 0.70081612 0.670205867 0.400265217 1.09940244 0.463212361 0.843699679 0.878681753 0.765085657 0.687127275 1 23.34790673 -13.99999825 0.068152584 1.933854173 0.378072501 0.188701061 0.186221116 543.1134454 2.66699428 80.9472001 10.61842275 1.00E-14 13.99999825 -1.555781671 DELHIVEAEAMNYEGSPIKVT(ph)LATLK ddPTM_HeLa_A485_30min_R1 1 DELHIVEAEAMNYEGSPIKVTLATLK 26 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNY(0.003)EGS(0.422)PIKVT(0.575)LATLK 89.511 0.019841 48989000 29524 22497 12657 40282 26511 24370 43496 35282 19241 51483 TRUE FALSE FALSE 36091.51194 25127.82845 17339.351 42482.50366 23871.47175 25645.97552 34202.72427 26629.03418 23102.49221 38649.23557 0.933822142 0.650150723 0.448633737 1.099180955 0.617644085 0.663557122 0.884952154 0.688992519 0.597747714 1 15.23815226 -10.53570392 3.127701303 1.00948894 0.729622199 0.166796323 0.179892819 159125988.7 185214788.5 12824462.24 0.045042259 2.91E-11 10.53570392 -0.279866741 DELNEELIQEES(ph)S(ph)EDEGEYEEVRK ddPTM_HeLa_A485_30min_R1 1 DELNEELIQEESSEDEGEYEEVRK 24 1 G3V5V3;O60524-4;O60524-5;O60524-3;O60524 G3V5V3 NEMF Nuclear export mediator factor NEMF 2 0 DELNEELIQEES(1)S(0.999)EDEGEY(0.001)EEVRK 95.926 0.00079683 687920000 450720 374570 246700 577460 413620 396920 505010 462710 379290 880280 TRUE FALSE FALSE 550981.109 418372.7032 337964.596 609005.1776 372438.5405 417702.1174 397110.4879 349229.647 455410.0239 660842.3964 0.833755691 0.633089986 0.511414821 0.921558878 0.563581487 0.632075242 0.600915574 0.528461323 0.689135604 1 19.33394672 -8.039147655 22.595278 1.000000003 0.64858725 0.412595528 0.123312106 2036.869289 1175641.266 0.116727555 0.030138925 9.14E-09 8.039147655 -0.351412753 DELNEELIQEES(ph)S(ph)EDEGEYEEVRK ddPTM_HeLa_A486_30min_R1 1 DELNEELIQEESSEDEGEYEEVRK 24 1 G3V5V3;O60524-4;O60524-5;O60524-3;O60524 G3V5V3 NEMF Nuclear export mediator factor NEMF 2 0 DELNEELIQEES(1)S(1)EDEGEYEEVRK 129.71 1.84E-06 650130000 457890 450770 217210 232920 336400 517340 586690 509260 418240 752770 TRUE FALSE FALSE 425794.2755 415049.3435 301319.5291 542249.5311 294205.5752 453515.8507 439893.9566 393312.6151 454493.38 564271.4923 0.754591152 0.735549021 0.533997434 0.960972756 0.52139011 0.803719233 0.779578559 0.697027265 0.805451606 1 19.10602994 -9.517857439 0.411308247 1.071677893 0.708583042 0.321560223 0.120760111 9.956519965 1.5857242 1.088116164 0.073851642 3.03E-10 9.517857439 -0.36309485 DELS(ph)PK ddPTM_HeLa_A485_30min_R1 4 DELSPK 6 0 B8ZZS2;Q13506-2;Q13506;H0Y4C5 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 DELS(1)PK;DELS(1)PK;DELS(1)PK;DELS(1)PK ;;; 107.29 0.0097538 863930000 2547040 2077800 1163460 4363080 2057140 2143160 3604750 2919770 1593470 5311600 TRUE FALSE FALSE 3113620.261 2320780.636 1593872.27 4601424.012 1852323.919 2255372.544 2834565.714 2203691.829 1913264.813 3987515.873 0.780842098 0.582011636 0.399715592 1.153957541 0.464530795 0.565608418 0.710860045 0.552647789 0.479813717 1 21.92705883 -10.87909459 5.648678772 1.076295648 0.632332197 0.22505489 0.204738448 0.116547039 0.002494593 0.117446104 0.046789649 1.32E-11 10.87909459 -0.44396345 DELS(ph)PK ddPTM_HeLa_A486_30min_R1 3 DELSPK 6 0 B8ZZS2;Q13506-2;Q13506;H0Y4C5 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 DELS(1)PK;DELS(1)PK;DELS(1)PK ;; 106.6 0.0099338 1437660000 3513100 3144650 1108670 2043960 1825640 3593210 4565600 3488030 2310420 8067200 TRUE FALSE FALSE 3266849.832 2895456.481 1537976.715 4758442.176 1596651.208 3149916.283 3423238.59 2693881.712 2510689.066 6047120.611 0.540232293 0.478815732 0.254332072 0.786893876 0.264034953 0.52089523 0.566093983 0.445481724 0.415187529 1 22.52781692 -10.31973348 3.51587626 1.002125998 0.474483816 0.542337881 0.144775965 114676343.5 178840086.4 2576532.926 0.03415134 4.79E-11 10.31973348 -0.527642183 DELS(ph)PKR ddPTM_HeLa_A485_30min_R1 2 DELSPKR 7 1 B8ZZS2;Q13506-2;Q13506;H0Y4C5 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 DELS(1)PKR;DELS(1)PKR ; 107.15 0.0019317 569060000 951460 867440 534440 1322340 849370 1055980 1616540 1542660 664000 1712980 TRUE FALSE FALSE 1163108.995 968879.5623 732151.5959 1394576.086 764803.7405 1111269.48 1271153.023 1164320.216 797258.7094 1285965.611 0.904463529 0.753425717 0.569339949 1.084458304 0.594731098 0.864151786 0.98848135 0.905405406 0.619968919 1 20.29442063 -6.491977973 24.93941616 0.87854333 0.779268136 0.073529562 0.167936567 1867.972808 1507606.867 0.057824266 0.050932503 3.22E-07 6.491977973 -0.099275193 DELS(ph)PKR ddPTM_HeLa_A486_30min_R1 3 DELSPKR 7 1 B8ZZS2;Q13506-2;Q13506;H0Y4C5 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 DELS(1)PKR;DELS(1)PKR;DELS(1)PKR ;; 123.21 0.0010508 790540000 990750 866500 388480 493380 709520 1058410 1348950 1173180 713810 1876080 TRUE FALSE FALSE 921303.5412 797835.3843 538909.8599 1148613.574 620525.3856 927834.1353 1011428.442 906072.5243 775683.6255 1406297.357 0.655127123 0.567330501 0.383211884 0.81676437 0.441247637 0.659770945 0.719213783 0.644296542 0.55157867 1 20.42347025 -14 0.262654101 3.587730956 0.573862487 0.490275795 0.120771919 165.7388431 1.626386099 231.721622 0.153552098 1.00E-14 14 -3.013868469 DELTDLDQS(ph)NVT(ph)EETPEGEEHHPVADTENKENEVEEVKEEGPK ddPTM_HeLa_A485_30min_R1 1 DELTDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPK 43 2 Q8NC51-3;Q8NC51-4 Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 2 0 DELTDLDQS(1)NVT(1)EETPEGEEHHPVADTENKENEVEEVKEEGPK 191.5 5.23E-23 189960000 159330 76415 42796 504930 115110 115970 287130 186250 67443 620520 TRUE FALSE FALSE 194772.4088 85351.06953 58628.02129 532513.0473 103649.2442 122042.0099 225782.3299 140571.8955 80978.19148 465835.7838 0.418113884 0.183221368 0.125855555 1.143134696 0.222501679 0.261985047 0.484682237 0.301762768 0.173834201 1 18.82946194 -10.51314207 2.962588941 1.022578514 0.372600519 0.313933732 0.280070657 83483350.35 94428218.18 15298422.82 0.074844478 3.07E-11 10.51314207 -0.649977995 DELTDLDQS(ph)NVTEETPEGEEHHPVADTENKENEVEEVKEEGPK ddPTM_HeLa_A485_30min_R1 1 DELTDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPK 43 2 Q8NC51-3;Q8NC51-4 Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELT(0.001)DLDQS(0.872)NVT(0.126)EETPEGEEHHPVADTENKENEVEEVKEEGPK 107.81 4.85E-07 381490000 281680 92268 57172 714310 161640 173280 421130 261260 122830 841110 TRUE FALSE FALSE 344338.7442 103057.94 78322.30193 753330.9466 145546.554 182352.6729 331152.1352 197185.5754 147480.8543 631436.7565 0.545325784 0.163211816 0.124038237 1.193042595 0.230500604 0.288790082 0.524442285 0.3122808 0.233563936 1 19.26827872 -10.00712248 4.184569094 1.000039437 0.402408672 0.269288238 0.295671758 514887488.6 1026233048 305747.6671 0.076237011 9.84E-11 10.00712248 -0.597630764 DELTDLDQS(ph)NVTEETPEGEEHHPVADTENKENEVEEVKEEGPK ddPTM_HeLa_A486_30min_R1 3 DELTDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPK 43 2 Q8NC51-3;Q8NC51-4 Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELTDLDQS(1)NVTEETPEGEEHHPVADTENKENEVEEVKEEGPK;DELTDLDQS(1)NVTEETPEGEEHHPVADTENKENEVEEVKEEGPK;DELTDLDQS(1)NVTEETPEGEEHHPVADTENKENEVEEVKEEGPK ;; 378.06 8.01E-174 3628380000 1330380 1023410 186191 1649690 540593 1980690 3105140 2302140 793245 4233090 TRUE FALSE FALSE 1237127.232 942311.2644 258289.1416 3840561.691 472786.7851 1736332.606 2328201.129 1777992.977 862004.1153 3173096.711 0.38988009 0.296968971 0.081399707 1.210351288 0.148998542 0.547204439 0.733731538 0.560333686 0.271660209 1 21.59746006 -14 0.153873724 2.753335811 0.33662852 0.199567903 0.311625798 227.8173598 2.053663726 123.8498342 1.465157248 1.00E-14 14 -2.416707292 DELTES(ph)PK ddPTM_HeLa_A485_30min_R1 1 DELTESPK 8 0 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELTES(1)PK 164.66 3.43E-05 1622900000 2314000 1755300 744350 4278400 1450300 1370500 2438700 1531300 1053700 4669300 TRUE FALSE FALSE 2828741.317 1960567.066 1019716.04 4512118.159 1305903.04 1442257.261 1917651.823 1155746.274 1265167.925 3505329.442 0.806983014 0.559310358 0.29090448 1.287216575 0.372547876 0.411446994 0.547067502 0.329711171 0.360926967 1 21.74111861 DELTES(ph)PK ddPTM_HeLa_A486_30min_R1 3 DELTESPK 8 0 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELTES(1)PK;DELTES(1)PK;DELT(0.014)ES(0.986)PK ;; 206.73 1.11E-06 3325900000 7763310 6492720 1771179 5052630 2626610 6563870 8421400 6622080 4405220 16188230 TRUE FALSE FALSE 7219142.059 5978213.221 2457026.943 11762777.99 2297156.082 5754086.456 6314276.648 5114376.943 4787068.017 12134591.84 0.594922528 0.492658781 0.202481219 0.969359179 0.189306415 0.47418871 0.520353443 0.421470867 0.394497654 1 23.53262225 -10.22353792 3.632846902 1.000794871 0.471986323 0.369350336 0.206485323 193910023.2 318997332.8 1748875.229 0.049901396 5.98E-11 10.22353792 -0.528808547 DELTES(ph)PKYIQK ddPTM_HeLa_A485_30min_R1 2 DELTESPKYIQK 12 1 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELTES(1)PKYIQK;DELTES(1)PKYIQK ; 204.82 1.68E-17 2175300000 1294440 906550 551280 2645180 2047450 1709360 3471060 3444570 1038930 4246600 TRUE FALSE FALSE 1582383.712 1012563.137 755221.4127 2789679.485 1843598.689 1798859.446 2729439.675 2599783.807 1247433.721 3188000.773 0.496356126 0.317616967 0.23689499 0.875056088 0.57829305 0.564259414 0.856160293 0.815490331 0.391290282 1 21.60422055 -5.256215127 24.99907455 0.710660479 0.347022112 0.479892303 0.178647096 382.1094658 1828463.03 0.047759916 0.079646392 5.54E-06 5.256215127 -0.363638367 DELTES(ph)PKYIQK ddPTM_HeLa_A486_30min_R1 1 DELTESPKYIQK 12 1 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELT(0.001)ES(0.999)PKYIQK 163.8 1.27E-10 1138400000 671070 511240 212450 724310 649020 917550 1446800 1336900 446040 1608100 TRUE FALSE FALSE 624031.4584 470727.4805 294716.3296 1686230.285 567613.8597 804352.01 1084795.337 1032517.054 484703.1063 1205421.293 0.517687436 0.390508682 0.244492387 1.398872157 0.470884215 0.667278747 0.899930459 0.856561154 0.402102658 1 20.20110602 DEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_HeLa_A485_30min_R1 2 DEPPPLSPAPLTPATPSSLDPFFSR 25 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DEPPPLS(1)PAPLTPATPSSLDPFFSR;DEPPPLS(1)PAPLTPATPSSLDPFFSR ; 194.66 3.44E-21 69784000 48313 55299 45315 47333 48091 47647 55823 41154 45131 64589 TRUE FALSE FALSE 59060.06017 61765.73701 62078.90421 49918.68194 43302.89118 50141.72324 43895.96002 31060.91697 54188.37773 48488.15097 1.218030776 1.27383156 1.280290194 1.029502692 0.893061301 1.034102605 0.905292512 0.64058778 1.11755917 1 15.56534462 -5.413464328 3.072024063 0.918411876 1.260524225 0.597416631 0.118895065 0.171719588 3.084382918 0.035219822 0.054771107 3.86E-06 5.413464328 0.342112348 DEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_HeLa_A486_30min_R1 2 DEPPPLSPAPLTPATPSSLDPFFSR 25 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DEPPPLS(0.999)PAPLT(0.001)PATPSSLDPFFSR;DEPPPLS(0.999)PAPLT(0.001)PATPSSLDPFFSR ; 116.72 0.00012725 77193000 48674 44383 30465 11956.4 33704 39057 42971 35679 35711 48573 TRUE FALSE FALSE 45262.20395 40865.92944 42261.86388 27835.10344 29476.53004 34238.54444 32219.2013 27555.67057 38806.45823 36410.00464 1.243125465 1.122381879 1.160721189 0.764490522 0.809572268 0.940360892 0.884899676 0.756815904 1.065818547 1 15.1520473 -5.245406312 24.10809309 0.877396763 1.170106827 0.645530076 0.09702593 301.5472946 453419.5565 0.025493805 0.043953805 5.68E-06 5.245406312 0.292710063 DEPQTVPDVPSFGES(ph)PPLSPIDMDTQER ddPTM_HeLa_A486_30min_R1 1 DEPQTVPDVPSFGESPPLSPIDMDTQER 28 0 P17535;U3KPR5 P17535 JUND Transcription factor jun-D 1 0 DEPQTVPDVPS(0.001)FGES(0.948)PPLS(0.051)PIDMDTQER 78.991 0.0037759 29946000 66259 72708 43903 22326 53800 62370 63546 57259 61103 78559 TRUE FALSE FALSE 61614.58626 66946.35328 60903.41736 51976.05629 47051.90233 54675.42353 47646.11868 44222.37566 66399.45724 58887.31507 1.04631339 1.13685525 1.034236614 0.882635865 0.799015922 0.928475402 0.809106658 0.750966071 1.127568088 1 15.84566928 -5.162687677 3.576869298 0.882133179 1.090316319 0.361253599 0.10498586 0.228940005 5.437279439 0.028436686 0.052559049 6.88E-06 5.162687677 0.208183141 DEPSKVQT(ph)LNEQDWER ddPTM_HeLa_A486_30min_R1 1 DEPSKVQTLNEQDWER 16 1 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 DEPS(0.008)KVQT(0.992)LNEQDWER 85.737 0.0016152 134610000 50345 65709 28285 35464 52469 57036 90517 83515 41101 85432 TRUE FALSE FALSE 46816.07548 60501.97953 39237.7095 82561.98425 45887.84877 49999.47822 67868.68921 64500.45762 44663.66777 64039.27113 0.731052597 0.944763712 0.612713243 1.289239912 0.716557949 0.780762762 1.059797965 1.00720162 0.697441851 1 15.96666927 -3.125990031 0.766975473 0.913528987 1.76E-15 0.063752538 0.193020631 42.364474 5.062099239 0.069784433 49.52403977 0.000748187 3.125990031 -0.913528987 DEQGACAVLAVHLNTLLGERPVQHR ddPTM_HeLa_A485_30min_R1 2 DEQGACAVLAVHLNTLLGERPVQHR 25 1 P40121-2;P40121;B8ZZL6;E7ENU9 P40121-2 CAPG Macrophage-capping protein 0 0 ; ; 127.38 9.92E-12 24608000 6112 5188.4 5370.8 6363.8 6615.6 5240.6 7196.2 7807.9 4005.5 8130.4 FALSE FALSE TRUE 7471.593314 5795.138247 7357.682418 6711.43828 5956.927635 5514.989712 5658.673082 5893.000283 4809.367109 6103.640909 1.224120722 0.949455961 1.205457943 1.099579477 0.975962991 0.903557368 0.927097968 0.965489348 0.787950533 1 12.57545437 -5.858676276 3.026692803 0.916555626 1.115765267 0.555806361 0.085899209 0.193858204 3.567539897 0.026775776 0.031553748 1.38E-06 5.858676276 0.199209641 DEQGACAVLAVHLNTLLGERPVQHR ddPTM_HeLa_A486_30min_R1 1 DEQGACAVLAVHLNTLLGERPVQHR 25 1 P40121-2;P40121;B8ZZL6;E7ENU9 P40121-2 CAPG Macrophage-capping protein 0 0 98.019 2.25E-05 15752000 2916.5 1464.4 1787.9 1597.6 2366 2020.6 1896.6 2311.9 1639.2 2778.7 FALSE FALSE TRUE 2712.068411 1348.355611 2480.222762 3719.293538 2069.234218 1771.318916 1422.05062 1785.530838 1781.287176 2082.895434 1.302066521 0.64734676 1.190757213 1.785636224 0.993441238 0.850411829 0.682727801 0.857234986 0.8551976 1 11.0243747 -5.993837316 24.99324624 0.840029523 1.212162574 0.313828851 0.265969569 216.2655132 877072.8255 0.088063876 0.099595755 1.01E-06 5.993837316 0.37213305 DEQLS(ph)PEEEEKRR ddPTM_HeLa_A486_30min_R1 1 DEQLSPEEEEKRR 13 2 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 DEQLS(1)PEEEEKRR 63.46 0.015566 399470000 216350 263820 200690 178150 409790 354340 493620 449100 258120 446860 TRUE FALSE FALSE 201184.9822 242913.9424 278402.5427 414742.2032 358390.3171 310625.1335 370111.055 346849.7338 280494.0494 334963.3474 0.6006179 0.72519559 0.831143302 1.238171897 1.069938905 0.927340665 1.104930011 1.035485633 0.837387289 1 18.35364372 -4.928176618 3.088764652 1.032929077 0.657112383 0.664072692 0.105205486 0.145589878 2.790378016 0.029167679 0.069449321 1.18E-05 4.928176618 -0.375816693 DERT(ph)FHIFY(ph)YMIAGAK ddPTM_HeLa_A486_30min_R1 2 DERTFHIFYYMIAGAK 16 1 P35749-4;P35749-3;P35749;P35749-2;A0A494C024 P35749-4 MYH11 Myosin-11 2 0 DERT(0.954)FHIFY(0.523)Y(0.523)MIAGAK;DERT(0.949)FHIFY(0.526)Y(0.526)MIAGAK ; 49.298 0.02819 1267300000 1346440 1337260 784330 439900 1234840 1313020 1548180 1486800 1049410 1632970 TRUE FALSE FALSE 1252061.509 1231290.647 1088043.581 1024109.431 1079954.853 1151032.942 1160808.989 1148288.097 1140373.704 1224063.683 1.022872851 1.005904075 0.888878247 0.836647182 0.882270153 0.940337466 0.948324017 0.938095062 0.931629391 1 20.22324719 -9.49760371 14.24635908 1.000003152 0.93015681 0.126849983 0.052510849 0 0 0.056855034 0.013789371 3.18E-10 9.49760371 -0.069846342 DETFGEYS(ph)DNEEK ddPTM_HeLa_A485_30min_R1 2 DETFGEYSDNEEK 13 0 P32004-3;P32004-2;H3BLW5 P32004-3 L1CAM Neural cell adhesion molecule L1 1 0 DETFGEYS(1)DNEEK;DETFGEYS(1)DNEEK ; 278.85 1.13E-48 353890000 632070 406390 176492 1008690 223370 329200 586510 355910 276660 1664720 TRUE FALSE FALSE 772671.7909 453913.7754 241783.7352 1063792.181 201130.4985 346436.403 461197.3472 268622.5145 332183.1243 1249735.941 0.61826804 0.363207747 0.193467858 0.851213561 0.160938397 0.277207682 0.369035836 0.214943418 0.26580265 1 20.25319187 -10.15927242 5.122748451 1.000031383 0.363890296 0.465800092 0.202921773 7.16E-05 1.17E-05 0.193393964 0.046902618 6.93E-11 10.15927242 -0.636141087 ADKDES(ph)T(ph)MINEIT(ph)LAK ddPTM_HeLa_A486_30min_R1 4 ADKDESTMINEITLAK 16 1 Q5THK1-2;Q5THK1-4;Q5THK1;H7BZH1 Q5THK1-2 PRR14L Protein PRR14L 3 0 ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK;ADKDES(1)T(1)MINEIT(1)LAK ;;; 48.823 0.02627 3498140000 3231410 2759120 1721780 1386370 2880270 1834650 2045210 1328620 737910 810010 TRUE FALSE FALSE 3004904.846 2540477.283 2388499.327 3227539.423 2518999.679 1608309.536 1533476.826 1026122.23 801872.6329 607178.2237 4.948966759 4.184071799 3.933769746 5.315637645 4.148698983 2.648826116 2.52557942 1.689985229 1.320654466 1 19.21176052 -6.650383998 1.058858123 1.243416018 4.594789301 0.909162237 0.440326023 0.153352839 0.347539034 0.312374285 0.196001086 2.24E-07 6.650383998 3.351373283 up DEVFHTDQDDPSS(ph)S(ph)DDEGMPYTRPVK ddPTM_HeLa_A486_30min_R1 1 DEVFHTDQDDPSSSDDEGMPYTRPVK 26 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 2 0 DEVFHT(0.005)DQDDPS(0.463)S(0.76)S(0.76)DDEGMPY(0.006)T(0.006)RPVK 55.406 0.035293 162390000 83614 79361 53994 28062 72963 93560 108510 91083 72747 109460 TRUE FALSE FALSE 77753.09038 73072.14533 74901.92281 65329.75417 63811.30019 82017.51845 81359.6503 70345.38923 79052.76853 82050.50353 0.94762478 0.890575221 0.912875846 0.796213934 0.7777076 0.99959799 0.991580146 0.857342566 0.963464758 1 16.32422457 -6.279634927 24.98986068 0.955304942 0.865258722 0.387657535 0.060879796 1043.107029 1432604.571 0.023041349 0.020359291 5.25E-07 6.279634927 -0.09004622 DEVVS(ph)PLPSALQGPSGSLSAPPAASVISAPPSSSSR ddPTM_HeLa_A485_30min_R1 1 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 36 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DEVVS(0.956)PLPS(0.044)ALQGPSGSLSAPPAASVISAPPSSSSR 110.41 4.70E-05 99283000 8799.9 12949 13666 14213 21276 13825 19995 25520 12284 16193 TRUE FALSE FALSE 10757.4074 14463.27291 18721.62209 14989.4202 19157.68674 14548.85562 15722.90491 19261.17999 14749.28612 12156.38311 0.884918425 1.189767777 1.540065159 1.233049342 1.575936408 1.196807923 1.293386755 1.584449899 1.213295599 1 13.56942643 -4.378278309 3.383544673 1.350664378 0.873477419 0.349749622 0.180943562 0.253219368 4.68941688 0.042643091 0.254309777 4.19E-05 4.378278309 -0.477186959 DEVVS(ph)PLPSALQGPSGSLSAPPAASVISAPPSSSSR ddPTM_HeLa_A486_30min_R1 3 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 36 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DEVVS(0.96)PLPS(0.04)ALQGPSGSLSAPPAASVISAPPSSSSR;DEVVS(0.965)PLPS(0.035)ALQGPSGSLSAPPAASVISAPPSSSSR;DEVVS(0.961)PLPS(0.039)ALQGPSGSLSAPPAASVISAPPSSSSR ;; 126.67 2.18E-06 341082000 53837 58550 50069 22596.5 55177 60293 69697 70363 54313 68687 TRUE FALSE FALSE 50063.30431 53910.28476 69457.05769 52605.79396 48256.18615 52854.66267 52258.07342 54342.88091 59020.89457 51487.32812 0.972342247 1.047059281 1.349012664 1.021723128 0.937243938 1.02655672 1.014969611 1.055461274 1.146318846 1 15.65192978 DEWGLVAPIS(ph)PGPLTPMR ddPTM_HeLa_A485_30min_R1 4 DEWGLVAPISPGPLTPMR 18 0 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DEWGLVAPIS(1)PGPLTPMR;DEWGLVAPIS(1)PGPLTPMR;DEWGLVAPIS(1)PGPLTPMR;DEWGLVAPIS(1)PGPLTPMR ;;; 245.66 1.43E-45 328419000 350147 549177 432765 362988 502952 491878 562755 617560 382925 432478 TRUE FALSE FALSE 428035.9922 613398.4729 592862.7824 382817.1153 452876.3329 517631.9715 442517.797 466102.4417 459774.5351 324669.1938 1.318375751 1.889302973 1.826051851 1.17909898 1.394885445 1.594336578 1.362980552 1.43562263 1.416132309 1 18.30861098 -12.05852038 0.122380476 1.32E-09 1.780241906 0.375659578 0.202950505 92.75843283 1.187215617 26.74336706 2.20268133 8.74E-13 12.05852038 1.780241905 DEWGLVAPIS(ph)PGPLTPMR ddPTM_HeLa_A486_30min_R1 2 DEWGLVAPISPGPLTPMR 18 0 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DEWGLVAPIS(0.999)PGPLT(0.001)PMR;DEWGLVAPIS(1)PGPLTPMR ; 148.41 3.88E-08 238770000 272600 289870 211840 87886 270200 242985 285740 251420 231843 339550 TRUE FALSE FALSE 253492.1477 266899.6455 293870.1213 204603.0495 236308.9965 213007.9812 214244.8298 194177.1545 251939.3379 254524.4699 0.995944114 1.04862077 1.154584946 0.803863965 0.928433312 0.836886062 0.84174551 0.762901714 0.989843287 1 17.95744484 -5.265843095 24.99905144 0.869207838 1.064607028 0.521976421 0.080995708 263.321783 1494829.627 0.021750457 0.033577868 5.42E-06 5.265843095 0.19539919 DEYEYVS(ph)DDGELKIDEFPIRR ddPTM_HeLa_A486_30min_R1 1 DEYEYVSDDGELKIDEFPIRR 21 2 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 DEY(0.018)EY(0.059)VS(0.923)DDGELKIDEFPIRR 44.711 0.025228 58543000 23799 20674 7839 15831 13631 23766 33237 25233 15217 51287 TRUE FALSE FALSE 22130.813 19035.71695 10874.47074 36855.36805 11921.27288 20833.99255 24920.75105 19487.99673 16536.02181 38444.40138 0.57565763 0.495149261 0.282862272 0.958666717 0.31009126 0.541925269 0.648228355 0.506913778 0.430128217 1 15.23048589 -10.59187115 3.171447769 1.023901196 0.529197211 0.384648939 0.179190358 195716958.3 211345067.1 38908717.08 0.041760208 2.56E-11 10.59187115 -0.494703985 DFAVLEDHTLAHS(ph)LQEQEIEHHLASNVQR ddPTM_HeLa_A485_30min_R1 3 DFAVLEDHTLAHSLQEQEIEHHLASNVQR 29 0 Q8IVM0;Q8IVM0-2 Q8IVM0 CCDC50 Coiled-coil domain-containing protein 50 1 0 DFAVLEDHTLAHS(1)LQEQEIEHHLASNVQR;DFAVLEDHT(0.005)LAHS(0.995)LQEQEIEHHLASNVQR;DFAVLEDHT(0.024)LAHS(0.976)LQEQEIEHHLASNVQR ;; 176.6 2.65E-15 429236000 106089 121875 121625 85574 138733 123495 120965 137896 99421 104981 TRUE FALSE FALSE 129688.132 136127.2211 166619.1487 90248.69094 124920.2554 129961.0072 95119.83956 104076.7898 119373.8828 78811.16873 1.645555245 1.727257992 2.114156552 1.145125651 1.58505777 1.649017637 1.206933498 1.320584271 1.514682306 1 16.26611248 -1.002372728 0.058828557 0.215672588 4.144404574 0.43397917 0.234660242 332.7449539 1.468232004 20.23951971 112.7063738 0.099455149 1.002372728 3.928731986 DFAVLEDHTLAHS(ph)LQEQEIEHHLASNVQR ddPTM_HeLa_A486_30min_R1 1 DFAVLEDHTLAHSLQEQEIEHHLASNVQR 29 0 Q8IVM0;Q8IVM0-2 Q8IVM0 CCDC50 Coiled-coil domain-containing protein 50 1 0 DFAVLEDHT(0.006)LAHS(0.994)LQEQEIEHHLASNVQR 283.31 6.13E-78 217040000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 DFDRVRVNGWAT(ph)LFLRT(ph)S(ph)IPT(ph)INMENK ddPTM_HeLa_A486_30min_R1 1 DFDRVRVNGWATLFLRTSIPTINMENK 27 3 P26006;P26006-1 P26006 ITGA3 Integrin alpha-3;Integrin alpha-3 heavy chain;Integrin alpha-3 light chain 4 0 DFDRVRVNGWAT(1)LFLRT(1)S(1)IPT(1)INMENK 85.866 0.0018485 404510000 190290 195310 65481 276560 129390 385050 426080 392890 126450 668930 TRUE FALSE FALSE 176951.6537 179832.9243 90836.99684 643845.6566 113160.6997 337546.4459 319470.2774 303437.5237 137410.7878 501425.574 0.352897145 0.358643303 0.181157487 1.284030353 0.225677958 0.673173574 0.63712402 0.605149676 0.274040246 1 18.93567605 -11.54975273 2.260757324 9.366205264 0.521783463 0.185227416 0.307312744 10939609.79 1158973.548 465356951.9 0.076343345 2.82E-12 11.54975273 -8.844421801 DFDS(ph)S(ph)EDEKHSK ddPTM_HeLa_A485_30min_R1 1 DFDSSEDEKHSK 12 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 DFDS(1)S(1)EDEKHSK 169.92 1.67E-10 857280000 1725600 929940 602060 3976000 1716200 1524200 3103400 2464700 1111300 5534100 TRUE FALSE FALSE 2109453.767 1038688.394 824787.0478 4193198.812 1545329.102 1604004.755 2440333.238 1860228.461 1334327.717 4154550.718 0.50774534 0.250012207 0.198526171 1.009302593 0.371960582 0.386083806 0.587388 0.44775683 0.321172566 1 21.98626104 -10.45895753 3.157604652 1.010634994 0.455613955 0.366420787 0.215635792 132141201.6 164539295.1 12418695 0.055710596 3.48E-11 10.45895753 -0.55502104 DFDS(ph)S(ph)EDEKHSK ddPTM_HeLa_A486_30min_R1 3 DFDSSEDEKHSK 12 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 DFDS(1)S(1)EDEKHSK;DFDS(1)S(1)EDEKHSK;DFDS(1)S(1)EDEKHSK ;; 110.12 0.00047041 3214420000 7802920 6831630 2001270 7388640 4771850 10461060 14689480 12870260 5324460 20212320 TRUE FALSE FALSE 7255975.602 6290266.758 2776215.34 17201127.32 4173320.077 9170480.777 11014016.73 9939982.754 5785988.48 15151023.51 0.47890993 0.415171078 0.183236158 1.135311242 0.275448063 0.605271371 0.726948693 0.65606015 0.381887631 1 23.85291192 -14 0.146787497 2.507685797 0.406624081 0.223524256 0.255277118 212.0047497 1.864944514 94.43111571 1.355671601 1.00E-14 14 -2.101061716 DFDS(ph)S(ph)EDEKHSKK ddPTM_HeLa_A486_30min_R1 1 DFDSSEDEKHSKK 13 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 DFDS(1)S(1)EDEKHSKK 109.35 0.00021844 156220000 368680 262430 73403 407130 204330 417630 716500 622410 181290 942500 TRUE FALSE FALSE 342837.4359 241634.091 101826.6074 947819.2152 178701.0261 366107.0568 537224.1216 480700.8301 197004.3632 706491.8654 0.485267351 0.342019637 0.144129908 1.341585461 0.252941378 0.518204207 0.760410909 0.680405329 0.278848735 1 19.43031342 -14 0.207830999 3.053505444 0.479936183 0.14442938 0.327824785 299.6415513 2.983162694 258.4454672 0.717762889 1.00E-14 14 -2.573569261 DFLAGGIAAAISK(ac)TAVAPIER ddPTM_HeLa_A485_30min_R1 1 DFLAGGIAAAISKTAVAPIER 21 1 P12236 P12236 SLC25A6 "ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 1 DFLAGGIAAAISK(1)TAVAPIER 128.9 6.44E-08 8601500 2097.3 1873.5 1276.1 1970.4 1338.5 1801.1 2726 1488.6 1752 4667.5 FALSE TRUE FALSE 2563.837149 2092.589528 1748.182493 2078.037963 1205.23424 1895.402811 2143.567831 1123.518516 2103.61033 3503.978149 0.731693247 0.597203932 0.49891364 0.593051062 0.343961688 0.540928833 0.611752625 0.320640845 0.600349158 1 11.77477806 -8.03019406 24.12543551 1.000000004 0.525663732 0.592103508 0.11641182 1695.606421 1354809.348 0.112197684 0.028969317 9.33E-09 8.03019406 -0.474336272 DFLAGGIAAAISK(ac)TAVAPIER ddPTM_HeLa_A486_30min_R1 1 DFLAGGIAAAISKTAVAPIER 21 1 P12236 P12236 SLC25A6 "ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 1 DFLAGGIAAAISK(1)TAVAPIER 122.34 1.12E-07 4192800 1804.1 1895.1 1609.3 1263.3 2539.7 2087 1999.7 1447.3 2666.8 2505.4 FALSE TRUE FALSE 1677.641906 1744.925374 2232.464059 2941.026244 2221.147144 1829.527159 1499.353909 1117.781384 2897.960371 1878.031533 0.89329805 0.929124641 1.188725546 1.566015369 1.182699601 0.974172759 0.798364609 0.595187762 1.54308398 1 10.87500557 -6.302383129 5.865397353 0.943683963 1.16470374 0.074638803 0.282254532 0.480910201 45.21584504 0.103689515 0.092547979 4.98E-07 6.302383129 0.221019777 DFLAGGVAAAISK(ac)TAVAPIER ddPTM_HeLa_A485_30min_R1 2 DFLAGGVAAAISKTAVAPIER 21 1 P05141 P05141 SLC25A5 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed" 0 1 ; DFLAGGVAAAISK(1)TAVAPIER;DFLAGGVAAAISK(1)TAVAPIER 271.45 4.61E-63 41677000 36685 44774 25406.8 37908 26446.1 34367.1 45140 48312 30715.3 90331 FALSE TRUE FALSE 44845.45169 50009.92982 34805.83259 39978.81805 23813.03343 36166.50821 35495.47024 36463.40625 36879.57897 67813.14412 0.661309135 0.737466615 0.513260859 0.589543791 0.351156604 0.533325931 0.523430534 0.537704109 0.54384116 1 16.04927732 -10.21294886 6.000930025 1.000008482 0.551735431 0.662235379 0.095416652 1.16E-05 1.53E-06 0.09928222 0.02407902 6.12E-11 10.21294886 -0.448273051 DFLAGGVAAAISK(ac)TAVAPIER ddPTM_HeLa_A486_30min_R1 2 DFLAGGVAAAISKTAVAPIER 21 1 P05141 P05141 SLC25A5 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed" 0 1 ; DFLAGGVAAAISK(1)TAVAPIER;DFLAGGVAAAISK(1)TAVAPIER 189.42 7.20E-23 34235000 9681.5 9516.5 8502.2 5078.1 11810.4 10916.7 9646.4 9919.3 15566.4 15445.4 FALSE TRUE FALSE 9002.876845 8762.377882 11794.47954 11822.07343 10329.0295 9569.908547 7232.768691 7660.891927 16915.70809 11577.77131 0.777600162 0.756827687 1.018717612 1.021100963 0.892143162 0.826576056 0.624711656 0.661689692 1.461050459 1 13.49906994 -7.755944017 24.99999995 1.230525251 0.8292726 0.505051994 0.161486575 104.4660544 475263.1562 0.121771024 0.043074408 1.75E-08 7.755944017 -0.401252651 DFLDGVYAFEYYPS(ph)TPGR ddPTM_HeLa_A485_30min_R1 1 DFLDGVYAFEYYPSTPGR 18 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 DFLDGVYAFEYYPS(0.5)T(0.5)PGR 195.15 1.14E-18 45046000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 DFLDGVYAFEYYPS(ph)TPGR ddPTM_HeLa_A486_30min_R1 3 DFLDGVYAFEYYPSTPGR 18 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 DFLDGVYAFEYYPS(0.5)T(0.5)PGR;DFLDGVYAFEYYPS(0.5)T(0.5)PGR;DFLDGVYAFEYYPS(0.5)T(0.5)PGR ;; 197.15 4.30E-25 157566000 114743.3 182478 154775 81053 195200 171916 207151 206049 163987 147299.3 TRUE FALSE FALSE 106700.3872 168017.7787 214708.025 188695.4802 170716.1958 150706.7518 155319.6288 159136.1407 178201.5252 110414.5965 0.966361247 1.521698978 1.944561967 1.708972239 1.546137931 1.364916927 1.40669471 1.441259994 1.613930864 1 16.75257138 -6.204001176 5.854825111 1.395605066 1.57021091 0.080717911 0.27093143 0.624090048 46.4529776 0.093721715 0.093091871 6.25E-07 6.204001176 0.174605844 DFLDGVYAFEYYPST(ph)PGR ddPTM_HeLa_A485_30min_R1 1 DFLDGVYAFEYYPSTPGR 18 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 DFLDGVYAFEYYPS(0.165)T(0.835)PGR 221.85 9.62E-34 56913000 34485 25197 35551 44626 50437 24231 37072 26152 36529 61276 TRUE FALSE FALSE 42156.06928 28143.56997 48702.7943 47063.80538 45415.31518 25499.69769 29151.26435 19738.181 43860.03524 46001.0209 0.91641595 0.61180316 1.058732901 1.023103498 0.98726755 0.554328952 0.633709074 0.429081368 0.953457866 1 15.48937826 -6.254504261 24.95359106 0.673407638 0.915867156 0.199292126 0.197485506 757.9043965 2727055.474 0.065545049 0.064170537 5.57E-07 6.254504261 0.242459518 DFLDGVYAFEYYPST(ph)PGR ddPTM_HeLa_A486_30min_R1 1 DFLDGVYAFEYYPSTPGR 18 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 DFLDGVYAFEYYPS(0.094)T(0.906)PGR 266.28 1.62E-57 52299000 38965 60566 48826 32818 63100 57579 63932 61230 50815 51190 TRUE FALSE FALSE 36233.75472 55766.52958 67732.73481 76401.96253 55185.40962 50475.4884 47935.5374 47289.26564 55219.68511 38371.69081 0.944283506 1.453324792 1.765174622 1.991102318 1.438180295 1.315435607 1.249242251 1.232399841 1.439073545 1 15.22775472 -6.190546458 3.658814313 1.259042647 1.562809915 0.20201513 0.269663859 0.41392835 10.86463636 0.099856141 0.098063856 6.45E-07 6.190546458 0.303767268 DFLLKPELLR ddPTM_HeLa_A485_30min_R1 2 DFLLKPELLR 10 1 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;Q13838-2;Q13838;Q5STU3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;F6R6M7;A0A0G2JJL7;F6QYI9;K7ENP6;F6SXL5;F6S2B7;K7EN69;K7EIL8;F6U6E2;K7EL56;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 99.343 0.002316 348980000 519360 556250 450520 642750 713700 629090 814450 850680 524450 865840 FALSE FALSE TRUE 634889.8402 621298.5988 617186.0957 677861.805 642641.522 662028.1796 640436.1041 642049.3962 629702.3045 650002.0226 0.976750561 0.955841024 0.949514116 1.04286107 0.988676188 1.018501722 0.985283248 0.987765228 0.968769762 1 19.31008468 -5.210996684 24.99999471 0.998158337 0.960215796 0.42957756 0.020124689 352.8846626 174893.1715 0.005470912 0.009475868 6.15E-06 5.210996684 -0.037942542 DFLLKPELLR ddPTM_HeLa_A486_30min_R1 2 DFLLKPELLR 10 1 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;Q13838-2;Q13838;Q5STU3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;F6R6M7;A0A0G2JJL7;F6QYI9;K7ENP6;F6SXL5;F6S2B7;K7EN69;K7EIL8;F6U6E2;K7EL56;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 95.018 0.0031781 489560000 405930 403000 238273 188681 482660 402700 496560 471210 321767 523820 FALSE FALSE TRUE 377476.4032 371064.8123 330538.6868 439258.9034 422120.2822 353018.9684 372315.4359 363925.7694 349658.0226 392652.0625 0.961350873 0.945021936 0.841810647 1.118697558 1.075049191 0.899063069 0.948207004 0.926840336 0.890503466 1 18.58289195 -9.412101858 12.05253188 0.999991756 0.958068294 0.0264306 0.078931722 0 0 0.080690312 0.019570275 3.87E-10 9.412101858 -0.041923462 DFLSGPDYDHVTGS(ph)DS(ph)EDEDEEVGEPR ddPTM_HeLa_A485_30min_R1 2 DFLSGPDYDHVTGSDSEDEDEEVGEPR 27 0 Q6ZW31;Q6ZW31-2;M0QXZ8 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 2 0 DFLSGPDYDHVT(0.145)GS(0.855)DS(1)EDEDEEVGEPR;DFLSGPDY(0.002)DHVT(0.031)GS(0.984)DS(0.983)EDEDEEVGEPR ; 150.07 3.70E-09 742790000 227123 289040 275840 284830 339890 243750 354690 349780 241635 369530 TRUE FALSE FALSE 277645.7278 322840.7137 377884.6947 300389.5417 306049.3582 256512.3731 278907.5839 263995.9066 290128.9281 277412.9717 1.000839024 1.163754931 1.362173846 1.082824425 1.103226559 0.924658899 1.00538768 0.951635048 1.045837642 1 18.08167572 -5.915105299 2.277595585 0.985076733 1.172973211 0.427119185 0.091029594 0.281534365 2.971321288 0.032370184 0.037395461 1.22E-06 5.915105299 0.187896478 DFLSGPDYDHVTGS(ph)DS(ph)EDEDEEVGEPR ddPTM_HeLa_A486_30min_R1 2 DFLSGPDYDHVTGSDSEDEDEEVGEPR 27 0 Q6ZW31;Q6ZW31-2;M0QXZ8 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 2 0 DFLSGPDYDHVT(0.163)GS(0.85)DS(0.986)EDEDEEVGEPR;DFLSGPDY(0.003)DHVT(0.219)GS(0.835)DS(0.943)EDEDEEVGEPR ; 103.5 0.00071346 606160000 189356 211044 176934 72663 229160 180652 239400 236581 192868 241670 TRUE FALSE FALSE 176083.1222 194320.1048 245447.5833 169163.1362 200416.616 158364.993 179499.5879 182716.6708 209585.9535 181154.259 0.972006528 1.07267754 1.354909261 0.933807116 1.10633124 0.874199667 0.990865955 1.008624759 1.156947425 1 17.4668592 DFLSNEASLGAIGT(ph)SLPSRLDSVPR ddPTM_HeLa_A485_30min_R1 2 DFLSNEASLGAIGTSLPSRLDSVPR 25 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 DFLSNEASLGAIGT(0.576)S(0.416)LPS(0.007)RLDSVPR;DFLSNEASLGAIGT(0.64)S(0.348)LPS(0.012)RLDSVPR ; 108.01 0.00048219 222205000 53942 76998 56370 33412 63662 63536 61522 90510 44488 59354 TRUE FALSE FALSE 65941.2118 86002.24631 77223.60875 35237.21296 57323.58775 66862.64671 48377.32211 68312.28059 53416.33353 44558.14013 1.479891477 1.930113018 1.733097668 0.790814268 1.286489687 1.500570861 1.085712329 1.533104398 1.198800789 1 15.44340139 -5.176833518 14.39005783 1.233027949 1.736230407 0.503266772 0.232490703 1.646815355 278.4715516 0.061783546 0.107027655 6.66E-06 5.176833518 0.503202458 DFLSNEASLGAIGT(ph)SLPSRLDSVPR ddPTM_HeLa_A486_30min_R1 1 DFLSNEASLGAIGTSLPSRLDSVPR 25 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 DFLS(0.005)NEAS(0.014)LGAIGT(0.536)S(0.441)LPS(0.003)RLDSVPR 57.919 0.032205 71721000 60956 67040 55105 18627 80500 68734 101160 101930 56457 82975 TRUE FALSE FALSE 56683.29918 61727.50624 76443.13176 43364.59736 70402.93937 60254.29792 75848.69804 78722.76412 61350.73822 62197.51992 0.911343398 0.992443209 1.229038262 0.697207821 1.131925187 0.968757243 1.219481068 1.265689761 0.986385603 1 15.92456943 -6.747663033 24.93696006 1.140029927 0.992852699 0.139573228 0.153320925 395.1542507 715280.3127 0.057082853 0.043976968 1.79E-07 6.747663033 -0.147177228 DFLSNEASLGAIGTS(ph)LPSR ddPTM_HeLa_A485_30min_R1 1 DFLSNEASLGAIGTSLPSR 19 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 DFLSNEASLGAIGT(0.199)S(0.801)LPS(0.001)R 112.44 4.71E-05 87758000 239190 228050 188840 212320 193190 164370 200150 159410 157330 286640 TRUE FALSE FALSE 292396.9903 254718.4637 258699.7743 223918.504 173955.3253 172976.159 157386.3174 120314.4476 188904.6879 215185.9232 1.358810957 1.183713414 1.202215138 1.040581561 0.808395469 0.803845142 0.731396901 0.559118579 0.877867311 1 17.71522418 -5.50823836 1.355472683 0.756220997 1.280041649 0.760686773 0.113975732 0.193274997 0.71964366 0.03980656 0.072817471 3.10E-06 5.50823836 0.523820652 DFLSNEASLGAIGTS(ph)LPSR ddPTM_HeLa_A486_30min_R1 1 DFLSNEASLGAIGTSLPSR 19 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 DFLSNEASLGAIGT(0.14)S(0.859)LPS(0.001)R 145.73 2.19E-08 74331000 146440 166890 120250 38922 121970 159150 127170 118720 155130 157960 TRUE FALSE FALSE 136175.3122 153665.0286 166814.0204 90612.38301 106671.3853 139515.6911 95350.72093 91690.04764 168576.7933 118405.7879 1.150073106 1.297783085 1.40883333 0.76526988 0.900896715 1.178284387 0.805287669 0.774371332 1.423720887 1 16.85338008 -5.252625435 24.98635616 0.966763861 1.286785168 0.332420614 0.199095456 723.6305274 2051391.741 0.053622317 0.091109922 5.59E-06 5.252625435 0.320021307 DFNHINVELSLLGK ddPTM_HeLa_A485_30min_R1 1 DFNHINVELSLLGK 14 0 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969 E7ESE0 RPL9 60S ribosomal protein L9 0 0 104.41 0.00093207 40539000 16088 19944 19203 21619 28958 23817 32256 33689 21027 36468 FALSE FALSE TRUE 19666.7201 22276.27731 26306.9888 22799.99123 26074.83984 25064.02129 25364.24209 25426.71993 25246.92603 27377.19874 0.718361301 0.813679936 0.960908713 0.832809501 0.952429066 0.915507153 0.926473243 0.928755355 0.922188068 1 14.74068722 -3.358012361 0.793732243 0.932136889 4.50E-14 0.715094799 0.042565567 4.694951163 0.788822313 0.014583505 5.401164183 0.000438518 3.358012361 -0.932136889 DFNHINVELSLLGK ddPTM_HeLa_A486_30min_R1 1 DFNHINVELSLLGK 14 0 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969 E7ESE0 RPL9 60S ribosomal protein L9 0 0 100.41 0.0012482 34492000 22532 23897 15678 10679 27675 24824 26401 27759 20030 29827 FALSE FALSE TRUE 20952.62316 22003.31469 21748.94147 24861.25169 24203.74344 21761.46727 19795.19056 21438.88167 21766.21653 22358.12506 0.937136862 0.984130585 0.972753369 1.111956017 1.082547994 0.973313604 0.885368988 0.958885489 0.973526021 1 14.44851159 -6.512383208 24.76521329 0.947922112 1.019513806 0.228831464 0.054903642 669.2639701 1579199.023 0.021867398 0.018067014 3.07E-07 6.512383208 0.071591694 DFNHINVELSLLGKK ddPTM_HeLa_A485_30min_R1 1 DFNHINVELSLLGKK 15 1 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969 E7ESE0 RPL9 60S ribosomal protein L9 0 0 55.755 0.02484 5975900 8417.8 9576 9930.1 10625 13012 11061 13075 15569 8960 16880 FALSE FALSE TRUE 10290.31057 10695.8299 13603.65722 11205.41685 11716.47959 11640.13686 10281.41944 11750.67834 10758.18981 12672.12665 0.812042907 0.844043797 1.0735102 0.884257012 0.924586686 0.918562225 0.811341278 0.927285424 0.848964827 1 13.62937104 DFQDYMEPEEGCQGS(ph)PQR ddPTM_HeLa_A485_30min_R1 5 DFQDYMEPEEGCQGSPQR 18 0 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR ;;;; 433.02 1.07E-182 2645480000 1616768 1701925 1963189 1980698 2364178 1634332 1999947 1977482 1940471 2498493 TRUE FALSE FALSE 1976412.464 1900950.324 2689454.306 2088898.516 2128792.137 1719903.096 1572641.985 1492501.439 2329905.731 1875664.676 1.053713112 1.0134809 1.433867332 1.113684414 1.134953472 0.916956596 0.838445168 0.79571869 1.242176046 1 20.8389705 -6.218712578 5.299023948 0.938147475 1.158042002 0.273474844 0.153977723 0.257097942 18.23901363 0.052820272 0.051893456 6.04E-07 6.218712578 0.219894527 DFQDYMEPEEGCQGS(ph)PQR ddPTM_HeLa_A486_30min_R1 4 DFQDYMEPEEGCQGSPQR 18 0 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR ;;; 361.35 4.83E-116 1873650000 828412 1129088 897131 362678 1238667 1053479 1199684 1161697 986204 1053587 TRUE FALSE FALSE 770344.5967 1039614.955 1244524.149 844332.7127 1083301.835 923511.472 899510.3742 897203.9528 1071688.957 789761.9575 0.975413654 1.316364944 1.57582185 1.069097726 1.37168146 1.169354213 1.138963919 1.136043518 1.356977184 1 19.59105835 -6.405783647 14.28731055 1.167167757 1.271462607 0.077144824 0.172924261 2.915395621 341.6651546 0.060434169 0.053294308 3.93E-07 6.405783647 0.10429485 DFQDYMEPEEGCQGS(ph)PQRR ddPTM_HeLa_A485_30min_R1 7 DFQDYMEPEEGCQGSPQRR 19 1 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR ;;;;;; 212.38 2.05E-26 11380610000 2359690 2698650 2931310 2589060 3755440 2808050 3503580 3238590 2979570 3646470 TRUE FALSE FALSE 2884594.9 3014233.642 4015723.551 2730493.792 3381535.207 2955075.156 2755011.511 2444320.725 3577542.369 2737472.137 1.053744022 1.101101122 1.466945908 0.997450807 1.235276576 1.079490496 1.006407143 0.892911636 1.306878094 1 21.38441285 -6.447689104 5.700491386 1.042481088 1.173335951 0.121296815 0.153602105 0.461128562 26.3967068 0.054174459 0.047131964 3.57E-07 6.447689104 0.130854863 DFQDYMEPEEGCQGS(ph)PQRR ddPTM_HeLa_A486_30min_R1 10 DFQDYMEPEEGCQGSPQRR 19 1 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR ;;;;;;;;; 215.51 8.89E-35 12833530000 2737824 3425410 2918440 1171119 4014250 3246080 3777670 3685940 2872280 3380750 TRUE FALSE FALSE 2545916.676 3153968.036 4048538.127 2726424.217 3510745.334 2845611.653 2832457.01 2846731.926 3121251.543 2534188.195 1.004628102 1.244567409 1.597568063 1.075857043 1.385353045 1.122888844 1.117697973 1.123330908 1.23165736 1 21.27309224 -6.30088424 23.64492836 1.126734539 1.268995206 0.163660254 0.160145804 549.2641512 329250.1346 0.056166031 0.049534901 5.00E-07 6.30088424 0.142260667 DFQEYVEPGEDFPAS(ph)PQR ddPTM_HeLa_A485_30min_R1 5 DFQEYVEPGEDFPASPQR 18 0 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR ;;;; 331.98 1.53E-101 1547320000 1542958 1593143 1680166 1830797 2016630 1456509 1899557 1556277 1721269 2223115 TRUE FALSE FALSE 1886183.684 1779447.215 2301729.321 1930808.804 1815847.236 1532769.559 1493701.129 1174597.626 2066711.9 1668933.344 1.130173168 1.066218266 1.379161924 1.156911875 1.088028616 0.918412688 0.895003467 0.703801401 1.238342986 1 20.6704949 -6.053543476 2.634247508 0.92864014 1.188138698 0.360603892 0.1444867 0.289057469 3.978282849 0.050404921 0.053075728 8.84E-07 6.053543476 0.259498559 DFQEYVEPGEDFPAS(ph)PQR ddPTM_HeLa_A486_30min_R1 5 DFQEYVEPGEDFPASPQR 18 0 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR ;;;; 326.94 2.12E-101 1722880000 1493990 1800870 1334190 536875 1582940 1664860 1661330 1666050 1572090 1636980 TRUE FALSE FALSE 1389269.016 1658162.503 1850824.099 1249872.132 1384392.905 1459466.5 1245647.662 1286726.785 1708360.027 1227069.553 1.132184408 1.351319082 1.508328598 1.018582956 1.128210623 1.189391829 1.015140225 1.048617645 1.392227541 1 20.2267856 -5.274753193 24.90522721 1.114911366 1.332681548 0.342128345 0.13815201 807.222493 1510013.125 0.038616523 0.057650969 5.31E-06 5.274753193 0.217770182 DFQEYVEPGEDFPAS(ph)PQRR ddPTM_HeLa_A485_30min_R1 6 DFQEYVEPGEDFPASPQRR 19 1 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR ;;;;; 216.8 8.27E-35 21532500000 1255765 1646445 1603064 1305466 2029710 1654427 2018040 2005620 1502223 1770119 TRUE FALSE FALSE 1535105.592 1838982.421 2196104.083 1376780.302 1827624.946 1741050.239 1586869.268 1513738.55 1803705.377 1328860.91 1.155204115 1.383878784 1.652621479 1.036060502 1.37533201 1.310182448 1.194157535 1.139124899 1.357331955 1 20.34175868 -11.27008327 0.167763249 0.574306456 1.393031781 0.229814694 0.162407698 64.12495413 1.42190975 11.09342022 0.71012137 5.37E-12 11.27008327 0.818725326 DFQEYVEPGEDFPAS(ph)PQRR ddPTM_HeLa_A486_30min_R1 7 DFQEYVEPGEDFPASPQRR 19 1 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR ;;;;;; 222.06 5.73E-35 21233150000 1480898 1601921 1325743 563988 1894458 1500054 1801992 1800828 1325866 1645731 TRUE FALSE FALSE 1377094.698 1474978.946 1839106.194 1312992.566 1656837.413 1314992.589 1351114.542 1390818.776 1440793.132 1233629.246 1.116295437 1.195642006 1.490809496 1.064333203 1.343059447 1.065954454 1.095235499 1.127420399 1.167930428 1 20.23447744 -6.279037051 24.50699683 1.099517381 1.243400198 0.290059665 0.117538178 894.1522649 1245216.442 0.040525095 0.035823771 5.26E-07 6.279037051 0.143882817 DFQHLISS(ph)PLKK ddPTM_HeLa_A485_30min_R1 2 DFQHLISSPLKK 12 1 Q15361 Q15361 TTF1 Transcription termination factor 1 1 0 DFQHLIS(0.253)S(0.747)PLKK;DFQHLIS(0.49)S(0.51)PLKK ; 172.42 8.94E-11 809370000 1507130 935790 699880 2624200 1787640 1327400 2360070 1907440 1205180 3637400 TRUE FALSE FALSE 1842385.869 1045222.5 958794.7364 2767553.401 1609656.285 1396900.611 1855821.765 1439637.349 1447048.571 2730663.121 0.674702732 0.382772409 0.351121575 1.013509641 0.589474502 0.511560947 0.679623111 0.527211628 0.529925702 1 21.38081991 -11.15479016 2.268103505 1.935158421 0.583381776 0.335363905 0.175501799 10665595.45 2514847.708 51253366.64 0.046634928 7.00E-12 11.15479016 -1.351776644 DFQHLISS(ph)PLKK ddPTM_HeLa_A486_30min_R1 2 DFQHLISSPLKK 12 1 Q15361 Q15361 TTF1 Transcription termination factor 1 1 0 DFQHLIS(0.043)S(0.957)PLKK;DFQHLIS(0.06)S(0.94)PLKK ; 174.39 6.03E-11 2016070000 2244500 2594800 1068050 1266600 2394700 3207100 4133100 3719800 2095200 3738100 TRUE FALSE FALSE 2087172.141 2389178.598 1481627.563 2948708.81 2094334.396 2811440.609 3098954.665 2872882.743 2276813.623 2802055.429 0.744871825 0.852652154 0.528764545 1.052337787 0.747427897 1.003349391 1.10595766 1.025276914 0.812551243 1 21.41805406 -5.711096664 1.265993698 0.989290146 0.737430125 0.344285152 0.139185037 0.504465322 1.694614786 0.054117394 0.081860367 1.94E-06 5.711096664 -0.251860021 DFS(ph)PEALKK ddPTM_HeLa_A485_30min_R1 4 DFSPEALKK 9 1 E5RGU4;E5RJT0;A0A087WZK9;B3KS98;O15372 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 DFS(1)PEALKK;DFS(1)PEALKK;DFS(1)PEALKK;DFS(1)PEALKK ;;; 136.7 0.00010201 808200000 938660 595691 369015 1616450 963160 806260 1488080 1377220 630880 2148540 TRUE FALSE FALSE 1147461.679 665351.8806 505529.0045 1704752.57 867264.4085 848474.5269 1170139.552 1039454.636 757491.8292 1612948.519 0.711406263 0.412506582 0.313419181 1.056916914 0.537688834 0.526039435 0.72546615 0.644443777 0.469631746 1 20.62126896 -10.98859729 2.849712535 1.37087263 0.600265809 0.273756602 0.195584881 70053072.56 15895517.83 170590528.5 0.050246369 1.03E-11 10.98859729 -0.77060682 DFS(ph)PEALKK ddPTM_HeLa_A486_30min_R1 2 DFSPEALKK 9 1 E5RGU4;E5RJT0;A0A087WZK9;B3KS98;O15372 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 DFS(1)PEALKK;DFS(1)PEALKK ; 91.961 0.0019048 465443000 591670 615070 299490 381986 524840 769470 985980 860180 425560 974120 TRUE FALSE FALSE 550196.9884 566329.6132 415460.5486 889282.7125 459009.6733 674540.6148 739277.3754 664335.7916 462447.8834 730194.0115 0.753494249 0.775587863 0.568972824 1.217871824 0.628613308 0.923782726 1.012439658 0.909807231 0.633321934 1 19.47792031 -5.17529981 24.99999877 0.893906999 0.706976004 0.227059305 0.171932594 128.7004387 37349.61359 0.044975811 0.077900386 6.68E-06 5.17529981 -0.186930995 DFSASYFSGEQEVT(ph)PSR ddPTM_HeLa_A485_30min_R1 4 DFSASYFSGEQEVTPSR 17 0 P49454 P49454 CENPF Centromere protein F 1 0 DFSASYFSGEQEVT(0.98)PS(0.02)R;DFSASYFSGEQEVT(0.994)PS(0.006)R;DFSASYFSGEQEVT(1)PSR;DFSASYFSGEQEVT(0.998)PS(0.002)R ;;; 396.92 2.50E-135 961280000 315631 371453 334741 293789 488887 340179 444788 431192 355276 442557 TRUE FALSE FALSE 385842.027 414891.1971 458575.6256 309837.9492 440211.6937 357990.2464 349755.4102 325441.4859 426576.6344 332235.6846 1.161350345 1.248785776 1.380272039 0.932584799 1.324998229 1.077518951 1.052732823 0.979550064 1.283957908 1 18.34184751 -5.79783652 0.880897729 1.077787988 1.242173387 0.155580161 0.137740252 1.130847774 1.90617183 0.069674526 0.109050123 1.59E-06 5.79783652 0.164385399 DFSASYFSGEQEVT(ph)PSR ddPTM_HeLa_A486_30min_R1 4 DFSASYFSGEQEVTPSR 17 0 P49454 P49454 CENPF Centromere protein F 1 0 DFSASYFSGEQEVT(0.997)PS(0.003)R;DFSASYFSGEQEVT(1)PSR;DFSASYFSGEQEVT(0.999)PS(0.001)R;DFSASYFSGEQEVT(0.927)PS(0.073)R ;;; 399.67 5.77E-136 870140000 276392 302400 271422 96346 371996 315096 325425 317676 244506 317213 TRUE FALSE FALSE 257018.3481 278436.7227 376523.8673 224298.3571 325336.793 276222.6592 244000.223 245348.1096 265699.9769 237780.8001 1.080904547 1.170980679 1.583491464 0.943298857 1.368221458 1.161669315 1.026156119 1.031824729 1.117415607 1 17.8592727 -6.599812552 4.597241547 1.048029712 1.233052446 0.226270903 0.16134473 0.326924765 12.93754788 0.061929735 0.047531021 2.51E-07 6.599812552 0.185022734 DFTNEAPPAPLPDAS(ph)ASPLSPHR ddPTM_HeLa_A485_30min_R1 1 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.726)AS(0.264)PLS(0.011)PHR 132.69 1.48E-06 103320000 121100 96653 122020 97988 146890 112480 128330 117940 136210 176470 TRUE FALSE FALSE 148038.2772 107955.7276 167160.2757 103340.8363 132265.1158 118369.2789 100911.2471 89015.03008 163546.0976 132479.2767 1.117444788 0.814887658 1.261784332 0.780052842 0.998383439 0.893492792 0.761713452 0.671916637 1.23450325 1 17.01540718 -5.295249293 24.98175889 0.889403914 1.039724108 0.13192078 0.180189976 1234.749094 912339.3533 0.049079847 0.072801326 5.07E-06 5.295249293 0.150320195 DFTNEAPPAPLPDAS(ph)ASPLSPHR ddPTM_HeLa_A486_30min_R1 1 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.795)AS(0.192)PLS(0.013)PHR 162.26 2.29E-14 134510000 109130 137020 111780 20176 140980 114780 126410 117020 105760 96743 TRUE FALSE FALSE 101480.5505 126162.0362 155064.2096 46970.74764 123296.9738 100619.6106 94780.88097 90377.10053 114927.362 72517.92311 1.399385782 1.739735927 2.138288066 0.647712257 1.700227592 1.387513683 1.306999386 1.246272599 1.584813202 1 16.14604999 -1 0.041285677 1.82E-08 3.796674227 0.146134181 0.362726226 1382.745342 4.352262638 107.6062995 362.3850716 0.1 1 3.796674209 DFTNEAPPAPLPDASAS(ph)PLSPHR ddPTM_HeLa_A485_30min_R1 1 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.307)AS(0.604)PLS(0.089)PHR 102.91 0.00034952 311940000 99489 106180 135590 125820 173340 100240 137060 114100 130440 186280 TRUE FALSE FALSE 121619.9848 118596.8274 185750.3834 132693.228 156081.661 105488.4114 107776.0113 86116.7961 156618.1115 139843.8242 0.869684346 0.848066248 1.328270193 0.948867272 1.116114078 0.754330139 0.770688387 0.61580693 1.119950147 1 17.09345702 -6.265222816 24.97921414 0.823051381 1.025456119 0.170261438 0.182040533 514.1318684 3394417.353 0.062560823 0.057273803 5.43E-07 6.265222816 0.202404738 DFTNEAPPAPLPDASAS(ph)PLSPHR ddPTM_HeLa_A486_30min_R1 1 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.015)AS(0.925)PLS(0.059)PHR 162.07 2.32E-14 187250000 194800 244840 191110 27672 256130 217880 211380 214710 211180 180540 TRUE FALSE FALSE 181145.5259 225437.9867 265112.9101 64421.81447 224003.7871 191000.1808 158490.4883 165825.2201 229485.2524 135331.6089 1.338530794 1.665819158 1.958987352 0.476029325 1.655221488 1.411349369 1.171126905 1.225325121 1.695725443 1 17.04613932 -10.35252927 0.045026712 8.18E-15 2.27305208 0.071766097 0.387791541 850.0581799 6.505665259 218.2431352 119.6025312 4.44E-11 10.35252927 2.27305208 DFTNEAPPAPLPDASAS(ph)PLSPHRR ddPTM_HeLa_A486_30min_R1 1 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.085)AS(0.458)PLS(0.458)PHRR 63.316 0.010074 2026300000 54841 48948 69824 31098 107480 59075 75119 72618 54742 61213 TRUE FALSE FALSE 50996.9291 45069.18221 96861.72275 72397.71561 93998.85619 51786.92713 56323.43167 56084.46664 59487.08064 45884.86637 1.111410649 0.982223242 2.11097319 1.577812498 2.048580799 1.128627611 1.22749473 1.222286803 1.296442277 1 15.48573079 DFTNEAPPAPLPDASASPLS(ph)PHR ddPTM_HeLa_A485_30min_R1 2 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.005)AS(0.029)PLS(0.966)PHR;DFTNEAPPAPLPDAS(0.001)AS(0.089)PLS(0.909)PHR ; 195.35 7.37E-22 863010000 650580 683100 738670 845590 1091650 635130 854900 711300 807290 1214680 TRUE FALSE FALSE 795299.2765 762982.6028 1011934.772 891782.4406 982961.493 668384.4247 672243.6311 536852.5597 969305.6981 911882.6305 0.872150922 0.836711411 1.109720415 0.977957481 1.077947381 0.732971988 0.737204119 0.588729889 1.062971994 1 19.79848862 -6.269816546 24.9057368 0.793222996 0.974880676 0.188769004 0.149186164 849.9388726 2526904.019 0.051679161 0.046324029 5.37E-07 6.269816546 0.181657679 DFTNEAPPAPLPDASASPLS(ph)PHR ddPTM_HeLa_A486_30min_R1 2 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDASAS(0.023)PLS(0.977)PHR;DFTNEAPPAPLPDASAS(0.005)PLS(0.995)PHR ; 192.79 1.93E-21 646640000 537090 674420 536480 212816 719130 660930 692090 774670 622900 576200 TRUE FALSE FALSE 499442.7645 620976.503 744219.4234 495446.4031 628930.0098 579391.1764 518921.7618 598294.5519 676893.4735 431915.7696 1.156342972 1.437725934 1.723066107 1.147090331 1.456140419 1.341444831 1.201442037 1.385211178 1.567188608 1 18.72039047 -5.32027241 24.99998472 1.319991445 1.438921889 0.088234703 0.19781069 727.4445852 309112.0537 0.054976611 0.081543538 4.78E-06 5.32027241 0.118930443 DFTNEAPPAPLPDASASPLS(ph)PHRR ddPTM_HeLa_A485_30min_R1 4 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDASASPLS(1)PHRR;DFTNEAPPAPLPDASASPLS(1)PHRR;DFTNEAPPAPLPDAS(0.01)AS(0.016)PLS(0.975)PHRR;DFTNEAPPAPLPDAS(0.007)AS(0.037)PLS(0.956)PHRR ;;; 280.8 2.24E-75 7208180000 932110 1033020 1128870 1095050 1550280 1005160 1372520 1221570 1097140 1507160 TRUE FALSE FALSE 1139454.654 1153822.703 1546485.989 1154869.809 1395928.68 1057788.623 1079269.89 921978.0422 1317325.934 1131452.749 1.007072239 1.019771001 1.36681447 1.020696454 1.233748984 0.934894209 0.953879771 0.81486217 1.164278345 1 20.10974491 -6.278672058 24.71970367 0.960780327 1.130643967 0.259863259 0.130773793 938.6026682 1346389.951 0.045077985 0.039849989 5.26E-07 6.278672058 0.16986364 DFTNEAPPAPLPDASASPLS(ph)PHRR ddPTM_HeLa_A486_30min_R1 3 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDASASPLS(1)PHRR;DFTNEAPPAPLPDAS(0.004)AS(0.169)PLS(0.827)PHRR;DFTNEAPPAPLPDAS(0.004)AS(0.011)PLS(0.985)PHRR ;; 254.6 2.12E-61 6559600000 1203640 1393000 1074170 351799 1654480 1370610 1442310 1565120 1155090 1278880 TRUE FALSE FALSE 1119271.052 1282613.607 1490117.391 819005.8509 1446959.691 1201518.074 1081428.783 1208776.342 1255214.131 958640.1239 1.16756124 1.337951098 1.554407493 0.854341301 1.509387783 1.253356754 1.128086292 1.260928175 1.309369491 1 19.8706298 -12.90239158 0.29295352 1.66E-15 1.281776865 0.149711156 0.186824552 240.1864153 4.123475923 145.2407217 0.192984799 1.25E-13 12.90239158 1.281776865 DFVSAGAAAGVAAAFGAPIGGTLFSLEEGSSFWNQGLTWK ddPTM_HeLa_A486_30min_R1 1 DFVSAGAAAGVAAAFGAPIGGTLFSLEEGSSFWNQGLTWK 40 0 A0A3B3IRY0;P51797-3;P51797-6;P51797;P51797-5 A0A3B3IRY0 CLCN6 Chloride transport protein 6 0 0 11.891 0.032239 50948000 17169 33992 24454 61597 62670 86344 101630 90199 37687 88444 FALSE FALSE TRUE 15965.54176 31298.35012 33923.2437 143400.9289 54809.34423 75691.75516 76201.09907 69662.65673 40953.7395 66297.04673 0.240818295 0.472092675 0.511685593 2.163006288 0.826723767 1.141706289 1.149389043 1.05076561 0.617730978 1 16.01665698 -5.028618876 24.9977677 1.141970903 0.390313434 0.432740725 0.383964503 614.7275341 536946.864 0.102587461 0.178153041 9.36E-06 5.028618876 -0.751657469 DFVYPSSTRDPSASNGGGS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 DFVYPSSTRDPSASNGGGSPAR 22 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DFVYPSSTRDPSASNGGGS(1)PAR;DFVYPSSTRDPSASNGGGS(1)PAR;DFVYPSSTRDPS(0.001)AS(0.001)NGGGS(0.998)PAR;DFVYPSSTRDPS(0.002)AS(0.004)NGGGS(0.994)PAR ;;; 178.94 1.10E-19 3019280000 1372890 2267960 1540870 1441780 2343630 2182730 2783060 3484630 1623810 1961880 TRUE FALSE FALSE 1678284.644 2533178.193 2110901.934 1520540.791 2110289.968 2297014.368 2188436.495 2630019.029 1949693.773 1472819.422 1.139504694 1.719951649 1.433238795 1.032401371 1.432823289 1.559603529 1.485882426 1.785703658 1.323783312 1 20.49014913 -5.991868896 24.99192545 1.484940689 1.349606581 0.012411531 0.254181968 621.1685633 1909221.089 0.077757365 0.088020033 1.02E-06 5.991868896 -0.135334108 DFVYPSSTRDPSASNGGGS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 DFVYPSSTRDPSASNGGGSPAR 22 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DFVYPSSTRDPSASNGGGS(1)PAR;DFVYPSSTRDPSASNGGGS(1)PAR;DFVYPSSTRDPSASNGGGS(0.999)PAR;DFVYPSSTRDPSASNGGGS(1)PAR ;;; 212.01 9.72E-28 2283720000 1688170 1592660 1225590 640739 1915080 1457700 1864670 1950370 1194660 2158260 TRUE FALSE FALSE 1569838.001 1466451.821 1700171.27 1491672.773 1674872.809 1277863.795 1398109.844 1506313.327 1298214.091 1617817.648 0.970342982 0.906438265 1.050904144 0.922027754 1.035266744 0.789868868 0.864194951 0.931077324 0.802447725 1 20.62561757 -6.254032147 24.99981985 0.872377429 0.974128322 0.336492454 0.069599685 650.5362949 2195596.934 0.021911098 0.021496643 5.57E-07 6.254032147 0.101750893 DFVYPSSTRDPSASNGGGS(ph)PARR ddPTM_HeLa_A485_30min_R1 3 DFVYPSSTRDPSASNGGGSPARR 23 2 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DFVYPSSTRDPSASNGGGS(1)PARR;DFVYPSSTRDPSASNGGGS(1)PARR;DFVYPSSTRDPSASNGGGS(1)PARR ;; 206.77 2.57E-29 1806030000 355350 767890 538630 306974 709280 701390 819170 1270770 521190 418790 TRUE FALSE FALSE 434396.3816 857688.0557 737891.6513 323743.2123 638661.5928 738113.6958 644147.6375 959111.665 625788.0524 314393.3603 1.38169706 2.728073058 2.34703319 1.029739343 2.03140929 2.347739454 2.04885891 3.050674048 1.99046205 1 18.26221122 -6.007120168 24.90202288 2.210660325 1.912242792 0.005387896 0.646505373 1211.840013 4238298.536 0.203032773 0.221380808 9.84E-07 6.007120168 -0.298417533 DFVYPSSTRDPSASNGGGS(ph)PARR ddPTM_HeLa_A486_30min_R1 3 DFVYPSSTRDPSASNGGGSPARR 23 2 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DFVYPSSTRDPSASNGGGS(1)PARR;DFVYPSSTRDPSAS(0.006)NGGGS(0.994)PARR;DFVYPSSTRDPSASNGGGS(1)PARR ;; 181.05 4.51E-21 974000000 617370 547460 441340 221943 797120 452057 627980 707830 379720 645200 TRUE FALSE FALSE 574095.5511 504077.2758 612238.6675 516694.5204 697137.7768 396286.8035 470852.7619 546672.5608 412634.4353 483637.7205 1.187036343 1.04226212 1.265903468 1.068350334 1.441446246 0.819387709 0.973565009 1.130334831 0.853189108 1 18.88356724 -6.279689016 24.9998044 0.964583124 1.18841733 0.471047938 0.129655748 810.4661532 1110237.616 0.044293573 0.039132621 5.25E-07 6.279689016 0.223834206 DFYLATS(ph)PPDSFLDDHHLTRPHPER ddPTM_HeLa_A485_30min_R1 6 DFYLATSPPDSFLDDHHLTRPHPER 25 1 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 0 DFYLAT(0.032)S(0.968)PPDS(0.001)FLDDHHLTRPHPER;DFYLAT(0.003)S(0.996)PPDSFLDDHHLTRPHPER;DFYLAT(0.04)S(0.96)PPDSFLDDHHLTRPHPER;DFYLAT(0.01)S(0.99)PPDSFLDDHHLTRPHPER;DFYLAT(0.218)S(0.782)PPDSFLDDHHLTRPHPER;DFYLAT(0.003)S(0.997)PPDSFLDDHHLTRPHPER ;;;;; 152.21 1.54E-09 8229150000 954089 1255572 1137807 775038 1363732 988232 1241317 1422760 1021794 1029124 TRUE FALSE FALSE 1166322.806 1402400.223 1558729.157 817376.3634 1227954.054 1039974.299 976099.4823 1073825.879 1226858.683 772582.3264 1.509642101 1.81521137 2.017557358 1.057979629 1.589415149 1.346101592 1.263424555 1.389917738 1.587997345 1 19.55932915 -5.257119576 24.99993097 1.345556961 1.784244381 0.490357508 0.214445528 320.7299298 1856148.511 0.056932607 0.09435263 5.53E-06 5.257119576 0.43868742 DFYLATS(ph)PPDSFLDDHHLTRPHPER ddPTM_HeLa_A486_30min_R1 7 DFYLATSPPDSFLDDHHLTRPHPER 25 1 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 0 DFYLAT(0.013)S(0.555)PPDS(0.432)FLDDHHLTRPHPER;DFYLAT(0.005)S(0.995)PPDSFLDDHHLTRPHPER;DFYLAT(0.025)S(0.975)PPDSFLDDHHLTRPHPER;DFYLAT(0.038)S(0.962)PPDSFLDDHHLTRPHPER;DFYLAT(0.022)S(0.975)PPDS(0.003)FLDDHHLTRPHPER;DFYLAT(0.023)S(0.977)PPDSFLDDHHLTRPHPER;DFYLAT(0.024)S(0.976)PPDSFLDDHHLTRPHPER ;;;;;; 163.76 3.91E-14 6703127000 702315 661899 617562 86172.9 745150 561477 649525 642705 566499 515500 TRUE FALSE FALSE 653086.3453 609447.7126 856698.5453 200614.8661 651686.3388 492207.6764 487006.975 496375.1017 615603.5894 386415.4447 1.690114498 1.577182592 2.217040124 0.519168861 1.686491438 1.273778477 1.260319642 1.284563307 1.593113314 1 18.55979323 -5.236452381 24.99958881 1.264893926 1.803019329 0.391649862 0.338732548 851.3165912 851744.4538 0.087568674 0.151594081 5.80E-06 5.236452381 0.538125403 DGADFAK ddPTM_HeLa_A485_30min_R1 1 DGADFAK 7 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;J3KSV6;K7EKH5;A8MVZ9;C9J8F3;J3QKP5 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 0 113.7 0.016682 45258000 38190 37749 37363 49563 52160 42576 59471 64698 41999 75200 FALSE FALSE TRUE 46685.23375 42163.41718 51185.1285 52270.50119 46966.76726 44805.21352 46764.53502 48830.71406 50427.81406 56454.02395 0.82696025 0.74686292 0.906669267 0.925895047 0.831947202 0.793658457 0.828364955 0.864964278 0.893254555 1 15.7847888 -8.140021163 1.525205864 0.999500757 0.838476987 0.508954323 0.048192176 0.53714759 2.562255806 0.050183271 0.014651112 7.24E-09 8.140021163 -0.16102377 DGADFAK(ac)WR ddPTM_HeLa_A485_30min_R1 2 DGADFAKWR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;J3KSV6;K7EKH5;A8MVZ9;C9J8F3;J3QKP5 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 ; DGADFAK(1)WR;DGADFAK(1)WR 191.85 1.74E-08 229580000 229340 312430 283620 249030 371660 270790 354330 390640 276170 314240 FALSE TRUE FALSE 280355.8918 348965.9707 388542.8404 262633.8783 334656.2254 284968.1457 278624.5009 294834.9275 331594.7858 235905.7512 1.188423302 1.479260124 1.647025723 1.113300024 1.418601385 1.207974559 1.181083969 1.24979966 1.405624001 1 17.84785106 -5.27542371 24.99643194 1.241108771 1.442338777 0.275745063 0.156699341 1046.126347 1869906.788 0.043188512 0.064423384 5.30E-06 5.27542371 0.201230007 DGADFAK(ac)WR ddPTM_HeLa_A486_30min_R1 2 DGADFAKWR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;J3KSV6;K7EKH5;A8MVZ9;C9J8F3;J3QKP5 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 ; DGADFAK(1)WR;DGADFAK(1)WR 181.69 1.39E-07 211810000 296210 310740 254350 92118 365390 283610 320070 323270 227000 304270 FALSE TRUE FALSE 275447.2086 286115.8307 352841.1317 214455.3594 319559.3791 248621.0817 239985.1006 249668.4779 246676.5428 228078.8115 1.207684338 1.254460372 1.547014075 0.940268664 1.401091916 1.090066543 1.052202522 1.094658799 1.081540811 1 17.7991729 -6.322635234 0.923165487 1.044771225 1.290485202 0.300089898 0.149526612 0.729389676 1.320483664 0.090988564 0.078762624 4.76E-07 6.322635234 0.245713977 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS(ph)SPVQEK ddPTM_HeLa_A485_30min_R1 2 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVSSPVQEK 41 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS(0.546)S(0.454)PVQEK;DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS(0.533)S(0.467)PVQEK ; 111.01 3.53E-06 44729000 29385 17032.5 12610.3 48991 25883 20200.6 42388 29638 17706.1 59825 TRUE FALSE FALSE 35921.59187 19024.30271 17275.37473 51667.25428 23305.99764 21258.27218 33331.45752 22369.23403 21259.55186 44911.7285 0.799826528 0.423593198 0.384651745 1.150417853 0.518928984 0.473334536 0.742154859 0.4980711 0.473363029 1 15.45480463 -10.63284126 6.158712065 1.002162287 0.605416993 0.221106997 0.221179289 0.006560533 0.000391113 0.213953608 0.051657212 2.33E-11 10.63284126 -0.396745294 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS(ph)SPVQEK ddPTM_HeLa_A486_30min_R1 1 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVSSPVQEK 41 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS(0.53)S(0.47)PVQEK 64.531 0.010498 16114000 17438 16307 7631 8640.7 14913 23215 26636 22422 16387 27706 TRUE FALSE FALSE 16215.68625 15014.77393 10585.92757 20115.98628 13042.47248 20350.96933 19971.39107 17317.00007 17807.43835 20768.23726 0.780792613 0.722968143 0.509717191 0.968593821 0.628000938 0.979908361 0.961631496 0.833821371 0.857436196 1 14.34209115 -6.267670654 24.94998134 0.918365324 0.72397207 0.424418748 0.118898603 522.9682416 2093954.328 0.040890041 0.036951616 5.40E-07 6.267670654 -0.194393254 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVSS(ph)PVQEK ddPTM_HeLa_A485_30min_R1 1 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVSSPVQEK 41 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DGAEQQGPEATVEEAEAAAFGSEKPQS(0.001)MFEPPQVS(0.313)S(0.686)PVQEK 89.015 3.53E-05 68113000 32509 18733 13369 48144 27587 22875 39356 32146 22921 59877 TRUE FALSE FALSE 39740.5149 20923.66139 18314.74943 50773.98481 24840.34142 24072.69963 30947.26909 24262.1431 27521.03446 44950.76585 0.884089829 0.465479531 0.407440209 1.129546602 0.552612196 0.535534805 0.688470341 0.539749271 0.6122484 1 15.45605808 -10.08952308 4.308247102 1.000042627 0.640127838 0.212892226 0.203833891 93140803.05 146309433.2 51074.35208 0.050229482 8.14E-11 10.08952308 -0.359914789 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVSS(ph)PVQEK ddPTM_HeLa_A486_30min_R1 2 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVSSPVQEK 41 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 DGAEQQGPEATVEEAEAAAFGSEKPQSMFEPPQVS(0.037)S(0.963)PVQEK;DGAEQQGPEATVEEAEAAAFGS(0.001)EKPQS(0.002)MFEPPQVS(0.295)S(0.702)PVQEK ; 238.33 2.51E-52 124093000 137110 128943 59927 69456 116887 175735 193816 178243 126911 225621 TRUE FALSE FALSE 127499.297 118725.0871 83132.3393 161697.0781 102225.9425 154054.6024 145321.1868 137660.9599 137911.7477 169124.0331 0.75388042 0.702000094 0.491546576 0.956085751 0.604443619 0.910897166 0.85925805 0.813964505 0.815447368 1 17.36772216 -6.052259358 0.860446727 0.876926535 0.674325718 0.297834703 0.125655999 0.808561441 1.316134372 0.071329997 0.083532662 8.87E-07 6.052259358 -0.202600817 DGAGLGLSGGS(ph)PGASTPVLLTR ddPTM_HeLa_A485_30min_R1 1 DGAGLGLSGGSPGASTPVLLTR 22 0 Q8N612;Q8N612-2 Q8N612 FAM160A2 FTS and Hook-interacting protein 1 0 DGAGLGLSGGS(0.999)PGASTPVLLTR 219.34 7.58E-36 132820000 67967 86954 77263 74625 99833 72397 94470 97851 65133 91134 TRUE FALSE FALSE 83086.02467 97122.5139 105845.7989 78701.57479 89893.27599 76187.59497 74285.71275 73852.88883 78204.59566 68415.971 1.214424402 1.419588328 1.547091963 1.150339221 1.313922388 1.11359371 1.085794905 1.079468547 1.143075141 1 16.06204553 -6.011781606 1.164993943 1.076881452 1.379401679 0.585775769 0.104209694 0.334592573 0.955634168 0.048256199 0.054962361 9.73E-07 6.011781606 0.302520227 DGALHMIGSLAEILLK ddPTM_HeLa_A485_30min_R1 1 DGALHMIGSLAEILLK 16 0 O95373 O95373 IPO7 Importin-7 0 0 102.28 0.00041272 9855400 6275.5 5887.3 5584.7 6661.8 7926.8 4598.9 6722.8 7192.2 4822.6 9233.9 FALSE FALSE TRUE 7671.463325 6575.768522 7650.712929 7025.717265 7137.579959 4839.691293 5286.41886 5428.301673 5790.451584 6932.058667 1.106664512 0.948602549 1.103671116 1.013510936 1.029647945 0.698160752 0.76260446 0.783072091 0.835314856 1 12.75906815 -6.243380813 23.61701872 0.798945827 1.037337595 0.636470431 0.084369959 233.3975646 305237.4096 0.026356327 0.026292603 5.71E-07 6.243380813 0.238391768 DGALHMIGSLAEILLK ddPTM_HeLa_A486_30min_R1 1 DGALHMIGSLAEILLK 16 0 O95373 O95373 IPO7 Importin-7 0 0 48.177 0.033114 7418100 10250 11451 8513.8 5387.7 12853 10745 13822 14327 10849 12752 FALSE FALSE TRUE 9531.527931 10543.58106 11810.57137 12542.83788 11240.85689 9419.391147 10363.58941 11065.05486 11789.40006 9558.816198 0.997145225 1.103021633 1.235568414 1.312174815 1.175967469 0.985413983 1.084191723 1.157575857 1.233353567 1 13.22261624 DGASS(ph)S(ph)PESASR ddPTM_HeLa_A486_30min_R1 2 DGASSSPESASR 12 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 2 0 DGAS(0.006)S(0.994)S(1)PESASR;DGAS(0.031)S(0.969)S(1)PESASR ; 162.67 5.86E-10 281660000 482380 469610 355590 193785 530570 491340 554480 544220 449410 626930 TRUE FALSE FALSE 448567.653 432396.3933 493283.971 451141.2734 464020.9632 430723.4664 415743.2393 420312.9862 488365.2206 469942.6474 0.954515738 0.920104604 1.049668452 0.959992195 0.987399134 0.91654475 0.884668037 0.894392089 1.039201748 1 18.84212517 -6.254621128 24.38544926 0.9364675 0.974711423 0.043852788 0.05369088 945.837299 3382783.287 0.018053898 0.01767227 5.56E-07 6.254621128 0.038243923 DGASS(ph)SPESASR ddPTM_HeLa_A485_30min_R1 1 DGASSSPESASR 12 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 DGASS(0.5)S(0.5)PESASR 166.77 2.08E-10 469440000 386440 524840 495210 462130 616240 520860 600540 696680 529440 606880 TRUE FALSE FALSE 472402.2448 586215.4725 678408.7864 487374.9917 554884.9819 548131.4242 472229.723 525818.1376 635693.7517 455595.9848 1.036888516 1.286700261 1.489057869 1.069752605 1.217932116 1.203108549 1.036509844 1.15413251 1.39530148 1 18.79739551 DGASS(ph)SPESASR ddPTM_HeLa_A486_30min_R1 3 DGASSSPESASR 12 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 DGAS(0.006)S(0.497)S(0.497)PESASR;DGAS(0.11)S(0.739)S(0.151)PESASR;DGAS(0.08)S(0.813)S(0.107)PESASR ;; 98.105 0.0012901 2257880000 1533420 1699030 1700980 601830 2034660 1613040 1802560 1870010 1577030 1762270 TRUE FALSE FALSE 1425935.177 1564392.675 2359645.01 1401090.655 1779453.97 1414039.525 1351540.422 1444249.545 1713728.23 1320986.122 1.079447508 1.18426125 1.786275398 1.060639951 1.347064849 1.070442378 1.023129918 1.093311672 1.297309792 1 20.33318388 -6.264829414 24.4039458 1.098063922 1.30023575 0.185746471 0.203407788 381.7924041 2748406.463 0.070967088 0.06518641 5.43E-07 6.264829414 0.202171828 DGASSS(ph)PESASR ddPTM_HeLa_A485_30min_R1 3 DGASSSPESASR 12 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 DGAS(0.004)S(0.077)S(0.919)PESASR;DGAS(0.111)S(0.052)S(0.837)PESASR;DGAS(0.012)S(0.077)S(0.911)PESASR ;; 223.55 4.35E-23 2320100000 1567280 2083670 2095880 1844380 2528440 2089080 2479320 2739750 2189260 2448880 TRUE FALSE FALSE 1915916.029 2327337.081 2871233.229 1945133.809 2276699.636 2198460.998 1949593.028 2067822.017 2628624.401 1838419.284 1.04215401 1.265944663 1.561794555 1.058046892 1.238400649 1.19584309 1.060472464 1.124782597 1.429828562 1 20.81003441 DGASSS(ph)PESASR ddPTM_HeLa_A486_30min_R1 1 DGASSSPESASR 12 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 DGASS(0.006)S(0.994)PESASR 231.74 9.22E-24 1477800000 682670 776330 701080 240980 888590 684740 770400 783020 654370 670550 TRUE FALSE FALSE 634818.3583 714810.7835 972556.9516 561013.6185 777134.7564 600263.7407 577637.7715 604743.4392 711091.3185 502639.9155 1.262968457 1.42211305 1.934897969 1.116134237 1.546106333 1.19422219 1.14920792 1.203134532 1.414713191 1 18.93916572 -6.154325189 1.553960186 1.19784625 1.482993276 0.239321392 0.22309348 0.590908379 2.858517391 0.093922634 0.092572644 7.01E-07 6.154325189 0.285147026 DGDGVPGGGPLS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 DGDGVPGGGPLSPAR 15 0 M0QZR4;Q92888;Q92888-3;Q92888-2 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 DGDGVPGGGPLS(1)PAR 91.699 0.00059916 0 133810 159260 151120 172760 198460 138090 185670 160810 139510 205490 TRUE FALSE FALSE 163575.5729 177884.0716 207025.5766 182197.4413 178700.6256 145320.1789 146000.0877 121371.0954 167508.3773 154265.1248 1.060353551 1.153106199 1.342011533 1.181066956 1.158399384 0.942015761 0.946423166 0.786769502 1.085847353 1 17.23505242 -6.228057479 3.797999394 0.936338511 1.190852725 0.585174028 0.0950889 0.157720725 4.9588426 0.033662363 0.032330417 5.91E-07 6.228057479 0.254514214 DGDGVPGGGPLS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 DGDGVPGGGPLSPAR 15 0 M0QZR4;Q92888;Q92888-3;Q92888-2 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 DGDGVPGGGPLS(1)PAR 61.186 0.013164 0 148930 131400 108350 47884 157130 156960 142260 160440 122950 148070 TRUE FALSE FALSE 138490.7761 120987.3854 150306.0217 111476.3719 137421.2902 137595.8711 106665.0433 123911.3144 133607.405 110992.3082 1.247751113 1.090051981 1.354202144 1.004361236 1.238115437 1.239688346 0.96101293 1.116395508 1.20375373 1 16.76010018 -7.777896089 0.021585393 1.74E-06 2.216378819 0.192639699 0.111469391 429.6062142 7.706011196 401.0446113 387.3732054 1.67E-08 7.777896089 2.216377076 DGDKS(ph)PMSSLQISNEK ddPTM_HeLa_A485_30min_R1 2 DGDKSPMSSLQISNEK 16 1 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 DGDKS(1)PMSSLQISNEK;DGDKS(0.999)PMS(0.001)SLQISNEK ; 200.29 1.91E-25 333440000 421845 242345 158097 850120 370910 327342 597490 408914 261157 1099150 TRUE FALSE FALSE 515682.9649 270685.1396 216583.6593 896559.903 333980.8981 344481.121 469831.3805 308627.2003 313568.8144 825152.1334 0.624955016 0.328042707 0.262477246 1.086538914 0.404750693 0.41747589 0.569387585 0.374024605 0.380013335 1 19.65430061 -10.79098274 2.633601498 1.142452594 0.493696929 0.316924122 0.222775618 77208932.89 55589296.41 70541467.92 0.057129839 1.62E-11 10.79098274 -0.648755666 DGDKS(ph)PMSSLQISNEK ddPTM_HeLa_A486_30min_R1 4 DGDKSPMSSLQISNEK 16 1 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 DGDKS(0.98)PMS(0.016)S(0.004)LQISNEK;DGDKS(1)PMSSLQISNEK;DGDKS(0.997)PMS(0.003)SLQISNEK;DGDKS(0.947)PMS(0.053)SLQISNEK ;;; 260.97 5.07E-51 3395230000 1394470 1222470 412835 952680 852546 1795900 2227810 1791550 1002580 2836590 TRUE FALSE FALSE 1296724.854 1125597.025 572695.7681 2217887.186 745611.731 1574340.117 1670388.375 1383653.174 1089484.442 2126289.401 0.609853416 0.529371507 0.269340461 1.043078701 0.350663334 0.74041667 0.785588441 0.650736054 0.512387656 1 21.01990654 -14 0.160286252 2.387886458 0.512658123 0.237580985 0.20904401 195.4506312 1.79659357 86.86226961 0.863092932 1.00E-14 14 -1.875228335 DGDS(ph)YDPYDFS(ph)DTEEEMPQVHTPK ddPTM_HeLa_A485_30min_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 DGDS(0.881)Y(0.047)DPY(0.072)DFS(0.99)DT(0.01)EEEMPQVHTPK;DGDS(0.996)Y(0.001)DPY(0.003)DFS(0.664)DT(0.336)EEEMPQVHTPK ; 141.72 4.04E-09 619300000 317370 279940 202425 560280 347580 332760 501420 474860 267560 687490 TRUE FALSE FALSE 387967.8616 312676.5478 277310.4311 590886.6777 312973.7148 350182.7991 394287.5208 358399.8404 321256.8378 516111.3953 0.751713419 0.605831514 0.537307321 1.14488206 0.606407294 0.678502359 0.763958177 0.69442342 0.622456394 1 18.97732296 -10.477739 3.254972777 1.005672181 0.713169354 0.22738861 0.159395756 711019615.2 834460562.6 36238722.88 0.039423487 3.33E-11 10.477739 -0.292502828 DGDSYDPYDFS(ph)DT(ph)EEEMPQVHT(ph)PK ddPTM_HeLa_A485_30min_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 3 0 DGDSYDPYDFS(1)DT(1)EEEMPQVHT(1)PK;DGDSYDPYDFS(1)DT(1)EEEMPQVHT(1)PK ; 192.64 4.07E-21 2454680000 968550 884360 641400 1667300 1243310 1097520 1711650 1572340 934820 2037840 TRUE FALSE FALSE 1184000.606 987778.2091 878680.5509 1758380.377 1119521.691 1154984.45 1345941.995 1186721.15 1122429.799 1529843.992 0.773935521 0.645672509 0.574359579 1.149385419 0.731788141 0.754968779 0.879790359 0.775713835 0.733689059 1 20.54495311 -14 0.123387669 1.636427021 0.690493778 0.165040476 0.146052363 300.832339 2.381240545 48.95238702 1.339620146 1.00E-14 14 -0.945933243 DGDSYDPYDFS(ph)DT(ph)EEEMPQVHT(ph)PK ddPTM_HeLa_A486_30min_R1 3 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 3 0 DGDSYDPYDFS(0.999)DT(1)EEEMPQVHT(1)PK;DGDSYDPYDFS(1)DT(1)EEEMPQVHT(1)PK;DGDSYDPY(0.003)DFS(0.997)DT(1)EEEMPQVHT(1)PK ;; 244.14 3.39E-49 2156399000 1116060 1153833 562747 703801 1148710 1381390 1705360 1769500 896169 1920510 TRUE FALSE FALSE 1037829.957 1062399.071 780657.7093 1638484.296 1004628.081 1210968.147 1278660.891 1366623.478 973849.6505 1439601.796 0.720914603 0.737981207 0.542273365 1.138151051 0.697851367 0.841182715 0.888204568 0.949306594 0.676471545 1 20.45723838 -1.577010907 0.185322269 0.943674152 1.57E-24 0.162174374 0.154425591 84.81724257 1.173567955 0.331714176 21.7650833 0.026484336 1.577010907 -0.943674152 DGDSYDPYDFS(ph)DT(ph)EEEMPQVHTPK ddPTM_HeLa_A485_30min_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 DGDSYDPY(0.001)DFS(0.999)DT(1)EEEMPQVHTPK;DGDSYDPYDFS(1)DT(1)EEEMPQVHTPK ; 172.18 3.95E-14 804060000 400720 383420 312000 621050 527300 495850 710620 725220 390360 794820 TRUE FALSE FALSE 489858.7815 428257.6337 427421.7834 654976.3889 474800.1605 521811.9393 558790.2318 547358.6579 468701.6714 596686.0016 0.820965768 0.717726966 0.716326145 1.097690221 0.795728674 0.874516811 0.936489595 0.917331153 0.785508073 1 19.18661241 -5.159304939 23.97119913 0.906191451 0.748275516 0.405567233 0.090290121 26.97548689 6323.522727 0.023536651 0.040766681 6.93E-06 5.159304939 -0.157915936 DGDSYDPYDFS(ph)DT(ph)EEEMPQVHTPK ddPTM_HeLa_A486_30min_R1 4 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 DGDSYDPYDFS(1)DT(1)EEEMPQVHTPK;DGDSYDPYDFS(1)DT(1)EEEMPQVHTPK;DGDSYDPYDFS(1)DT(1)EEEMPQVHTPK;DGDS(0.012)Y(0.014)DPY(0.101)DFS(0.868)DT(0.734)EEEMPQVHT(0.272)PK ;;; 248.95 3.32E-49 1295460000 755572 773043 429796 372731 739654 863323 1034909 988235 610987 1093737 TRUE FALSE FALSE 702610.3046 711784.2573 596224.5215 867736.6048 646879.6983 756814.9859 775963.822 763235.4635 663947.8451 819858.1362 0.856990098 0.868179781 0.727228889 1.05839848 0.789014184 0.923104806 0.946461086 0.930936012 0.809832599 1 19.64501477 DGDSYDPYDFS(ph)DTEEEMPQVHT(ph)PK ddPTM_HeLa_A485_30min_R1 6 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 DGDSYDPYDFS(0.999)DT(0.004)EEEMPQVHT(0.996)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(0.993)DT(0.007)EEEMPQVHT(1)PK;DGDSYDPYDFS(1)DT(0.001)EEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK ;;;;; 233.6 2.03E-39 15486117000 1382075 1189612 888810 2149365 1744590 1567480 2365516 2342432 1224933 2711950 TRUE FALSE FALSE 1689512.816 1328726.775 1217617.805 2266779.367 1570892.494 1649550.829 1860104.182 1767946.879 1470765.817 2035910.775 0.829856021 0.652644896 0.598070318 1.113398188 0.771592013 0.810227466 0.913647202 0.868381317 0.722411726 1 20.9572429 -1.000000003 0.049127612 1.275361493 1.24E-05 0.155181785 0.135793193 979.9146868 3.645093246 22.59647119 95.44498664 0.099999999 1.000000003 -1.275349111 DGDSYDPYDFS(ph)DTEEEMPQVHT(ph)PK ddPTM_HeLa_A486_30min_R1 8 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DTEEEMPQVHT(1)PK;DGDSYDPYDFS(1)DT(0.001)EEEMPQVHT(0.999)PK;DGDS(0.013)Y(0.011)DPY(0.064)DFS(0.9)DT(0.132)EEEMPQVHT(0.88)PK ;;;;;;; 250.43 1.91E-49 24573370000 4764280 4502100 2330037 2571150 4522820 5544180 7059790 6722010 3870850 7484850 TRUE FALSE FALSE 4430328.575 4145337.2 3232289.727 5985767.139 3955525.742 4860195.441 5293355.871 5191555.063 4206378.395 5610594.842 0.789636162 0.738840946 0.576104641 1.066868542 0.705010049 0.866253147 0.943457159 0.925312772 0.749720576 1 22.4197223 -5.250583274 24.97256041 0.883745832 0.705258633 0.376210598 0.112909514 804.2678764 1850073.069 0.029797516 0.050975889 5.62E-06 5.250583274 -0.178487199 DGDSYDPYDFS(ph)DTEEEMPQVHTPK ddPTM_HeLa_A485_30min_R1 9 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(0.997)DT(0.003)EEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDS(0.011)Y(0.009)DPY(0.044)DFS(0.748)DT(0.186)EEEMPQVHT(0.001)PK;DGDSYDPYDFS(0.999)DT(0.001)EEEMPQVHTPK;DGDSYDPYDFS(0.999)DT(0.001)EEEMPQVHTPK ;;;;;;;; 253.76 2.77E-61 39778570000 4015438 3627712 2774450 5483440 4803290 4436920 6644690 6435320 3843300 7541460 TRUE FALSE FALSE 4908658.33 4051941.362 3800834.509 5782986.442 4325057.582 4669230.27 5224997.699 4857047.68 4614615.057 5661512.812 0.867022383 0.715699407 0.671346093 1.021456037 0.763940262 0.824731909 0.922897797 0.85790633 0.815085157 1 22.43275618 -14 0.079044693 1.561634341 0.655106868 0.254128492 0.093265717 359.8268167 2.013315285 35.47237607 3.396609778 1.00E-14 14 -0.906527472 DGDSYDPYDFS(ph)DTEEEMPQVHTPK ddPTM_HeLa_A486_30min_R1 12 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPY(0.002)DFS(0.832)DT(0.165)EEEMPQVHT(0.001)PK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(0.998)DT(0.002)EEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(0.999)DT(0.001)EEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(1)DTEEEMPQVHTPK;DGDSYDPYDFS(0.999)DT(0.001)EEEMPQVHTPK ;;;;;;;;;;; 292.37 2.69E-89 45202690000 8405895 8371936 4936522 3815629 8400495 9607237 11253270 11156190 7132742 12161650 TRUE FALSE FALSE 7816685.169 7708513.301 6848075.523 8882977.143 7346826.586 8421993.778 8437582.821 8616169.075 7751013.82 9116293.681 0.857441131 0.845575359 0.751190754 0.974406645 0.805900604 0.923839674 0.925549693 0.945139481 0.850237398 1 23.12001597 -1.000004952 0.028477238 1.508963695 1.49E-05 0.343845121 0.060393025 1635.49963 3.582484095 61.94984608 143.5597152 0.09999886 1.000004952 -1.508948827 DGDSYDPYDFSDTEEEMPQVHT(ph)PK ddPTM_HeLa_A485_30min_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPYDFSDTEEEMPQVHT(1)PK;DGDSYDPYDFSDT(0.001)EEEMPQVHT(0.999)PK ; 161.5 8.43E-14 465650000 106440 99044 72365 170430 145810 129250 163590 175490 122020 258630 TRUE FALSE FALSE 130117.2108 110626.3342 99135.82486 179740.1593 131292.6444 136017.3301 128637.6601 132450.8023 146508.2948 194158.3007 0.670160432 0.56977391 0.510592771 0.925740278 0.676214429 0.700548623 0.662540101 0.682179448 0.75458167 1 17.56687386 -14 0.180206725 2.304214871 0.616088798 0.495132248 0.099888076 119.941504 1.154720817 55.94505263 0.324598555 1.00E-14 14 -1.688126073 DGDSYDPYDFSDTEEEMPQVHT(ph)PK ddPTM_HeLa_A486_30min_R1 1 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPYDFSDT(0.011)EEEMPQVHT(0.989)PK 144.44 4.60E-09 219810000 100770 93495 40698 49428 84772 106520 132480 128840 86812 171410 TRUE FALSE FALSE 93706.54338 86086.1157 56457.35553 115070.882 74139.10529 93378.64542 99332.10277 99505.94456 94336.93406 128487.8203 0.729302927 0.669994366 0.4393985 0.895578131 0.577012709 0.72675095 0.773085749 0.774438731 0.734209156 1 16.97127208 -10.03017398 0.213326736 1.234746862 0.616277848 0.428037663 0.11104526 16.92903653 0.80671395 2.579786334 0.276727972 9.33E-11 10.03017398 -0.618469013 DGEEAGAYDGPR ddPTM_HeLa_A485_30min_R1 1 DGEEAGAYDGPR 12 0 P30101;H7BZJ3 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 88.496 0.0311 10343000 8990.6 7743.7 12485 12084 14910 11551 13716 12497 10603 17468 FALSE FALSE TRUE 10990.52795 8649.258354 17103.72104 12744.11832 13425.50805 12155.7925 10785.46455 9432.091155 12730.92484 13113.54907 0.838104764 0.659566552 1.304278571 0.971828317 1.023789058 0.92696435 0.822467243 0.719263039 0.970822221 1 13.67877057 -6.587104641 5.480279632 0.855755061 0.963920657 0.042685926 0.167868245 0.582543944 33.87224292 0.067281267 0.051931725 2.59E-07 6.587104641 0.108165596 DGES(ph)DGFADEEES(ph)GEEGEEDQEEGREPGAGR ddPTM_HeLa_A485_30min_R1 2 DGESDGFADEEESGEEGEEDQEEGREPGAGR 31 1 P48681 P48681 NES Nestin 2 0 DGES(1)DGFADEEES(1)GEEGEEDQEEGREPGAGR;DGES(1)DGFADEEES(1)GEEGEEDQEEGREPGAGR ; 303.9 6.43E-93 2198360000 610990 566220 392120 820720 533050 499160 667890 598130 420520 890490 TRUE FALSE FALSE 746902.6176 632434.5035 537181.5055 865553.8554 479977.6703 525295.2458 525189.8453 451437.6797 504914.5068 668507.2313 1.117269317 0.946039884 0.803553769 1.29475616 0.717984261 0.785773468 0.785615803 0.675292141 0.75528653 1 19.35058364 -5.815655451 24.99992242 0.770326558 1.016750644 0.425973286 0.142500648 87.83931272 40503.54885 0.042695186 0.048411827 1.53E-06 5.815655451 0.246424085 DGES(ph)DGFADEEES(ph)GEEGEEDQEEGREPGAGR ddPTM_HeLa_A486_30min_R1 2 DGESDGFADEEESGEEGEEDQEEGREPGAGR 31 1 P48681 P48681 NES Nestin 2 0 DGES(1)DGFADEEES(1)GEEGEEDQEEGREPGAGR;DGES(1)DGFADEEES(1)GEEGEEDQEEGREPGAGR ; 274.04 2.35E-77 2339700000 595540 571280 320020 303440 403990 567270 667630 536020 417780 923580 TRUE FALSE FALSE 553795.7214 526009.6922 443940.3144 706423.655 353317.8071 497285.995 500581.9125 413979.9472 453993.5068 692309.5565 0.799924999 0.759789732 0.641245394 1.020386976 0.510346569 0.718300059 0.723060816 0.597969425 0.655766633 1 19.40105774 -5.782197748 24.99965664 0.682783143 0.790362844 0.096844637 0.147425005 534.4864045 643688.1675 0.043344065 0.04919971 1.65E-06 5.782197748 0.107579701 DGESDGFADEEES(ph)GEEGEEDQEEGREPGAGR ddPTM_HeLa_A485_30min_R1 2 DGESDGFADEEESGEEGEEDQEEGREPGAGR 31 1 P48681 P48681 NES Nestin 1 0 DGESDGFADEEES(1)GEEGEEDQEEGREPGAGR;DGESDGFADEEES(1)GEEGEEDQEEGREPGAGR ; 237.05 1.38E-50 1291590000 136956 141865 126774 186846 158573 176528 210243 195312 185857 236863 TRUE FALSE FALSE 167421.3897 158454.8777 173672.9781 197052.9239 142784.9153 185770.7331 165322.8655 147411.4258 223156.7951 177817.4132 0.941535402 0.891110014 0.976692749 1.10817563 0.802986123 1.044727452 0.929733835 0.829004444 1.254977176 1 17.44003709 -7.759101665 24.99999998 1.127488567 0.94417743 0.343322572 0.103344709 63.48342223 678966.7876 0.07402717 0.024945527 1.74E-08 7.759101665 -0.183311136 DGESDGFADEEES(ph)GEEGEEDQEEGREPGAGR ddPTM_HeLa_A486_30min_R1 1 DGESDGFADEEESGEEGEEDQEEGREPGAGR 31 1 P48681 P48681 NES Nestin 1 0 DGESDGFADEEES(1)GEEGEEDQEEGREPGAGR 283.45 4.04E-78 819910000 211840 212650 122760 122170 184350 249890 245730 244950 196470 336220 TRUE FALSE FALSE 196991.1099 195798.8395 170295.9596 284417.9341 161227.104 219061.1125 184245.7549 189180.2322 213500.1778 252028.3236 0.781622903 0.776892203 0.675701672 1.128515756 0.639718194 0.869192436 0.731051781 0.75063084 0.847127715 1 17.94322635 -8.064070334 7.438279939 0.999998533 0.79613904 0.192099689 0.127151082 1.678559529 194.0721584 0.116686516 0.030197073 8.63E-09 8.064070334 -0.203859492 DGFIDKEDLHDMLASLGK ddPTM_HeLa_A485_30min_R1 1 DGFIDKEDLHDMLASLGK 18 1 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 0 130.39 2.89E-05 35566000 83426 38522 35527 133510 80804 60498 94929 53271 65884 187140 FALSE FALSE TRUE 101983.8259 43026.8128 48669.9157 140803.3132 72758.87004 63665.58173 74646.64365 40206.20372 79106.31448 140489.4421 0.725918079 0.306263675 0.346431127 1.002234126 0.517895644 0.453169867 0.531332765 0.286186657 0.563076579 1 17.10010219 -8.04242034 22.82889565 1.000000005 0.516090211 0.331802643 0.202540176 3716.416232 2000021.302 0.198598386 0.051277883 9.07E-09 8.04242034 -0.483909794 DGFIDKEDLHDMLASLGK ddPTM_HeLa_A486_30min_R1 1 DGFIDKEDLHDMLASLGK 18 1 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 0 156.11 4.40E-08 38091000 19586 25984 12146 10718 36684 36866 38597 33613 27295 29959 FALSE FALSE TRUE 18213.12254 23924.93321 16849.25648 24952.04566 32082.75066 32317.84775 28939.62236 25960.05367 29660.95258 22457.0714 0.811019488 1.065363011 0.750287345 1.111099716 1.428625758 1.439094491 1.288664129 1.155985712 1.320784534 1 14.45488218 -5.50710141 5.67104973 1.288636658 0.897706574 0.607135537 0.142079044 0.111869537 12.30738452 0.040606114 0.057247089 3.11E-06 5.50710141 -0.390930084 DGFPS(ph)GTPALNAK ddPTM_HeLa_A486_30min_R1 2 DGFPSGTPALNAK 13 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 DGFPS(0.999)GT(0.001)PALNAK;DGFPS(0.999)GT(0.001)PALNAK ; 181.71 4.25E-17 83625000 401810 441110 222300 157680 338120 418480 470520 408550 290450 428990 TRUE FALSE FALSE 373645.1939 406154.8371 308380.5134 367087.0087 295709.8368 366852.1924 352790.9193 315532.0836 315626.4399 321568.1117 1.161947284 1.263044507 0.95898972 1.141552894 0.919586943 1.140822672 1.097095472 0.981229395 0.98152282 1 18.29476482 -4.756722687 24.9998051 1.033667395 1.212495929 0.486390138 0.07579474 94.60025434 501390.9754 0.018826369 0.046479189 1.75E-05 4.756722687 0.178828535 DGGAAS(ph)PATEGR ddPTM_HeLa_A485_30min_R1 2 DGGAASPATEGR 12 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 DGGAAS(0.998)PAT(0.002)EGR;DGGAAS(0.824)PAT(0.176)EGR ; 164.06 2.56E-10 1077190000 442470 719850 840990 414880 790960 559740 645570 660710 614640 551100 TRUE FALSE FALSE 540895.925 804030.1956 1152107.198 437543.8439 712209.2452 589047.1209 507638.6957 498669.8365 737992.6102 413720.9122 1.307393243 1.943412024 2.784744893 1.057582131 1.721472674 1.423778938 1.227007581 1.205329056 1.783793346 1 18.65829836 -5.294219753 24.9927561 1.368103316 2.005006999 0.356302956 0.409578526 705.8071449 538127.3514 0.114916351 0.170461536 5.08E-06 5.294219753 0.636903684 DGGAAS(ph)PATEGR ddPTM_HeLa_A486_30min_R1 3 DGGAASPATEGR 12 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 DGGAAS(0.999)PAT(0.001)EGR;DGGAAS(0.998)PAT(0.002)EGR;DGGAAS(1)PATEGR ;; 187.74 4.59E-13 3970820000 746320 1148280 1511170 188317 1531700 716190 751950 857730 1071550 666160 TRUE FALSE FALSE 694006.822 1057286.111 2096335.495 438411.493 1339579.903 627833.7595 563804.1567 662443.6031 1164432.817 499349.2 1.389822637 2.117328136 4.198135282 0.877965746 2.682651546 1.257304026 1.129077921 1.326613927 2.331900836 1 18.92968953 -6.27201044 24.50838849 1.411898832 2.277285514 0.186622553 0.880481879 975.0654692 2260625.456 0.307603519 0.274192822 5.35E-07 6.27201044 0.865386681 DGGAWGTEQR ddPTM_HeLa_A485_30min_R1 2 DGGAWGTEQR 10 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 166.66 1.21E-05 106707000 60670 71674 74198 63561 87449 71061 92255 100655 67538 92967 FALSE FALSE TRUE 74165.83219 80055.65082 101646.9278 67033.17649 78742.27051 74781.64408 72543.9656 75969.20343 81092.2571 69792.03783 1.062668959 1.147059941 1.456425847 0.960470257 1.128241458 1.071492485 1.039430397 1.088508171 1.161912729 1 16.09077484 -5.315614821 24.99997725 1.069910002 1.214555665 0.308757509 0.107766213 395.4974266 182506.5943 0.030218033 0.044820609 4.83E-06 5.315614821 0.144645663 DGGGGGEFYGYMTMDRPLS(ph)HCGR ddPTM_HeLa_A486_30min_R1 1 DGGGGGEFYGYMTMDRPLSHCGR 23 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 DGGGGGEFYGYMT(0.002)MDRPLS(0.998)HCGR 86.449 0.0015354 48710000 69642 80062 82399 29282 94061 77701 88206 97087 70362 79614 TRUE FALSE FALSE 64760.45543 73717.59554 114306.0995 68169.97583 82262.9923 68115.04063 66135.92585 74982.40949 76461.03481 59678.1362 1.085162164 1.235252979 1.915376498 1.142293982 1.378444394 1.141373457 1.108210311 1.256446904 1.281223572 1 15.86491486 -6.043835557 1.943760136 1.171801171 1.381654979 0.142168539 0.225626553 0.705567708 5.334194338 0.086997926 0.092695744 9.04E-07 6.043835557 0.209853807 DGGQT(ph)ESNEEGKENR ddPTM_HeLa_A486_30min_R1 1 DGGQTESNEEGKENR 15 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77;Q5VU81;Q5VU80;Q5VU79;Q5VU78 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 DGGQT(0.559)ES(0.441)NEEGKENR 54.805 0.01323 0 20493 21322 16751 13885 20305 25563 30062 27933 16746 30271 TRUE FALSE FALSE 19056.54653 19632.36707 23237.43581 32324.98171 17758.15756 22409.29697 22540.16964 21573.26567 18197.55676 22690.94457 0.839830465 0.865207132 1.024084111 1.424576293 0.782609887 0.987587665 0.993355282 0.950743395 0.801974405 1 14.46982905 -7.528986543 23.91597464 0.892777749 0.992139879 0.039207095 0.170586823 341.3778267 1336635.878 0.117542186 0.044734106 2.96E-08 7.528986543 0.09936213 DGGQTES(ph)NEEGKENR ddPTM_HeLa_A485_30min_R1 4 DGGQTESNEEGKENR 15 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77;Q5VU81;Q5VU80;Q5VU79;Q5VU78 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 DGGQTES(1)NEEGKENR;DGGQTES(1)NEEGKENR;DGGQT(0.044)ES(0.956)NEEGKENR;DGGQT(0.026)ES(0.974)NEEGKENR ;;; 237.76 2.08E-41 1436363000 826901 606642 411737 1357340 923228 762365 1255308 987878 638340 1848609 TRUE FALSE FALSE 1010842.275 677583.5048 564055.6501 1431488.047 831308.1787 802281.2526 987101.1909 745599.3716 766448.9828 1387784.797 0.728385465 0.488248254 0.406443168 1.031491374 0.599018076 0.578102062 0.711278285 0.537258639 0.552282302 1 20.40435244 -10.29916851 3.498954636 1.001318259 0.624981257 0.321665941 0.163002158 55471351.1 78570415.42 758794.4063 0.041454941 5.02E-11 10.29916851 -0.376337002 DGGQTES(ph)NEEGKENR ddPTM_HeLa_A486_30min_R1 3 DGGQTESNEEGKENR 15 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77;Q5VU81;Q5VU80;Q5VU79;Q5VU78 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 DGGQTES(1)NEEGKENR;DGGQTES(1)NEEGKENR;DGGQT(0.003)ES(0.997)NEEGKENR ;; 252.77 1.78E-50 1786316000 1181529 1068798 559880 843215 925416 1484254 1856221 1689620 926196 2205068 TRUE FALSE FALSE 1098709.919 984102.554 776680.5301 1963047.134 809341.6961 1301141.832 1391774.873 1304930.41 1006479.415 1652904.62 0.664714651 0.595377702 0.469888293 1.187634852 0.489648154 0.787185066 0.842017655 0.789477139 0.608915604 1 20.65657205 -14 0.050639742 1.959875528 0.233173528 0.157799167 0.197328031 1064.59011 3.975048453 141.8390871 31.06408207 1.00E-14 14 -1.726702 DGGRS(ph)SPGGQDEGGFMAQGK ddPTM_HeLa_A485_30min_R1 2 DGGRSSPGGQDEGGFMAQGK 20 1 A0A1B0GTU4;F5GZ78;P49023;A0A1B0GV30 A0A1B0GTU4 PXN Paxillin 1 0 DGGRS(0.643)S(0.357)PGGQDEGGFMAQGK;DGGRS(0.5)S(0.5)PGGQDEGGFMAQGK ; 230.88 2.69E-36 1192040000 362350 625750 378720 474670 1032380 872410 1286450 1896190 515760 722780 TRUE FALSE FALSE 442953.5074 698926.0192 518824.2879 500600.0202 929592.6223 918088.0386 1011589.448 1431146.429 619268.3012 542604.2478 0.81634729 1.28809537 0.956174394 0.922587728 1.713205575 1.692003043 1.864322759 2.637551098 1.141289077 1 19.04954082 -5.784657857 8.009622173 1.768611993 1.013542166 0.358501183 0.433941908 0.18584213 50.58050974 0.130065227 0.150914721 1.64E-06 5.784657857 -0.755069827 DGGRSS(ph)PGGQDEGGFMAQGK ddPTM_HeLa_A486_30min_R1 1 DGGRSSPGGQDEGGFMAQGK 20 1 A0A1B0GTU4;F5GZ78;P49023;A0A1B0GV30 A0A1B0GTU4 PXN Paxillin 1 0 DGGRS(0.24)S(0.76)PGGQDEGGFMAQGK 144.48 8.43E-11 0 214910 166690 136980 129520 377690 196200 320440 370350 119470 260010 TRUE FALSE FALSE 199845.9188 153480.8773 190022.3245 301529.1056 330316.5984 171994.8388 240262.5227 286029.3897 129825.7558 194901.8036 1.025367211 0.787477973 0.974964423 1.547082172 1.694784718 0.8824692 1.232736272 1.467556402 0.66610854 1 17.57238792 -5.023928761 23.0313768 1.241223348 0.900122127 0.156597259 0.299431384 429.8012759 413684.9594 0.081498748 0.142482059 9.46E-06 5.023928761 -0.341101222 DGGS(ph)GNS(ph)TIIVSR ddPTM_HeLa_A485_30min_R1 2 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 DGGS(1)GNS(0.971)T(0.03)IIVSR;DGGS(0.997)GNS(0.982)T(0.021)IIVSR ; 219.03 5.49E-27 1950240000 1746070 1620810 1492040 2044700 2230300 1589170 2533000 2468900 1532340 2568600 TRUE FALSE FALSE 2134477.248 1810349.63 2044007.685 2156396.784 2008243.501 1672376.484 1991803.857 1863398.404 1839866.583 1928295.292 1.106924472 0.938834233 1.060007611 1.118291785 1.041460563 0.867282356 1.032935083 0.966344943 0.954141511 1 20.87889457 -6.034574172 24.9825751 0.965007464 1.051923049 0.357139398 0.059827335 723.5091119 522791.0537 0.019617036 0.019625766 9.23E-07 6.034574172 0.086915585 DGGS(ph)GNS(ph)TIIVSR ddPTM_HeLa_A486_30min_R1 1 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 DGGS(1)GNS(0.951)T(0.049)IIVSR 155.63 5.64E-08 1312700000 1117700 1329600 862970 511700 1211000 1220200 1657300 1470200 936850 1393700 TRUE FALSE FALSE 1039355.002 1224237.654 1197135.095 1191263.46 1059105.088 1069664.13 1242626.011 1135467.554 1018056.912 1044708.449 0.994875655 1.171846227 1.145903526 1.140283169 1.013780533 1.0238877 1.189447652 1.086875057 0.97448902 1 19.99466895 -7.723453024 6.309680341 0.98697482 1.099988735 0.311292073 0.064500707 0.19963038 21.39079959 0.048301308 0.016908351 1.89E-08 7.723453024 0.113013915 DGGS(ph)GNST(ph)IIVSR ddPTM_HeLa_A486_30min_R1 1 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 DGGS(0.993)GNS(0.404)T(0.603)IIVSR 170.78 1.09E-11 1133900000 1145700 1267900 806840 551190 1227800 1241600 1526300 1451100 875720 1465900 TRUE FALSE FALSE 1065392.346 1167426.986 1119270.056 1283198.176 1073797.875 1088424.016 1144403.596 1120716.207 951628.1147 1098829.099 0.969570562 1.062428168 1.01860249 1.167786854 0.977220094 0.990530754 1.041475511 1.019918574 0.866038327 1 20.06753559 -7.62239775 7.976794767 0.933843172 1.034300461 0.293034422 0.061040408 0.287165352 20.26653625 0.040838951 0.015250723 2.39E-08 7.62239775 0.100457289 DGGS(ph)GNSTIIVSR ddPTM_HeLa_A485_30min_R1 4 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DGGS(0.983)GNS(0.005)T(0.012)IIVSR;DGGS(0.995)GNS(0.002)T(0.002)IIVSR;DGGS(0.99)GNS(0.003)T(0.007)IIVSR;DGGS(0.999)GNSTIIVSR ;;; 158.91 6.42E-09 3355830000 1885700 2563720 2443250 2653780 3622250 2746220 3450320 4000560 2845530 3843340 TRUE FALSE FALSE 2305167.459 2863524.753 3347109.847 2798749.282 3261606.072 2890007.833 2713130.945 3019416.387 3416601.77 2885266.069 0.798944501 0.99246471 1.160069736 0.970014277 1.130435112 1.001643441 0.940339948 1.046494956 1.184154836 1 21.46027293 -4.311057613 3.642029576 1.050801458 0.782785202 0.490974407 0.077701328 0.198997792 4.693583882 0.019465017 0.131611434 4.89E-05 4.311057613 -0.268016256 DGGS(ph)GNSTIIVSR ddPTM_HeLa_A486_30min_R1 3 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DGGS(0.851)GNS(0.075)T(0.075)IIVSR;DGGS(0.997)GNS(0.001)T(0.002)IIVSR;DGGS(0.993)GNS(0.002)T(0.004)IIVSR ;; 164.7 7.51E-12 2610290000 1539860 1599240 1178670 619470 2029810 1650120 1752450 1798360 1378230 1755480 TRUE FALSE FALSE 1431923.766 1472510.398 1635082.59 1442157.466 1775212.303 1446544.972 1313968.474 1388912.686 1497696.086 1315896.382 1.088173648 1.119016982 1.24256181 1.095950628 1.349051739 1.099284861 0.99853491 1.055487883 1.13815655 1 20.32761446 -6.513515477 24.64733866 1.052131815 1.179506523 0.372603945 0.080439846 422.5990466 1112431.901 0.029329224 0.024022301 3.07E-07 6.513515477 0.127374708 DGGTSYS(ph)PQENSHNHSALHSSNSHSSNPSNNPSK ddPTM_HeLa_A485_30min_R1 3 DGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSK 34 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 DGGTS(0.002)YS(0.995)PQENS(0.001)HNHS(0.001)ALHSSNSHSSNPSNNPSK;DGGT(0.001)S(0.001)YS(0.995)PQENS(0.002)HNHSALHSSNSHSSNPSNNPSK;DGGT(0.205)S(0.205)YS(0.354)PQENS(0.083)HNHS(0.083)ALHS(0.014)S(0.014)NS(0.014)HS(0.014)S(0.014)NPSNNPSK ;; 80.43 0.00015657 396948000 24774.4 137155 189904 7214.9 168920 54643 43296.8 53099 100048 10762.2 TRUE FALSE FALSE 30285.37981 153194.0842 260157.3922 7609.031718 152101.7317 57504.02299 34046.08498 40076.38699 120126.7159 8079.381604 3.748477457 18.96111506 32.20016146 0.941783925 18.82591257 7.117379251 4.21394689 4.96032852 14.86830574 1 12.98002916 -6.315259388 8.466248442 6.519236208 15.33657696 0.191568523 8.714541578 0.650566939 96.53076182 3.081746677 2.720884108 4.84E-07 6.315259388 8.817340756 DGGTSYS(ph)PQENSHNHSALHSSNSHSSNPSNNPSK ddPTM_HeLa_A486_30min_R1 1 DGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSK 34 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 DGGTS(0.001)YS(0.999)PQENSHNHSALHSSNSHSSNPSNNPSK 85.939 4.92E-05 69179000 10206 16816 55297 0 38935 5235.5 2071 6460.1 25780 1326.5 TRUE FALSE FALSE 9490.612104 15483.43892 76709.47931 0 34051.40925 4589.597241 1552.813895 4989.276253 28014.63116 994.3357659 9.544675379 15.57164033 77.14645488 0 34.24538311 4.615741883 1.5616595 5.017697667 28.17421651 1 9.957589291 -6.266815347 24.77638925 7.917955762 27.90236439 0.178297703 20.61722756 719.1175321 3314208.361 7.162892485 6.501367334 5.41E-07 6.266815347 19.98440862 DGGTSYSPQENS(ph)HNHSALHSSNSHSSNPSNNPSK ddPTM_HeLa_A485_30min_R1 1 DGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSK 34 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 DGGT(0.082)S(0.082)YS(0.082)PQENS(0.321)HNHS(0.321)ALHS(0.022)S(0.022)NS(0.022)HS(0.022)S(0.022)NPSNNPSK 67.684 0.00043907 423570000 100590 213440 269180 104940 291390 132360 202580 174580 155000 130590 TRUE FALSE FALSE 122965.8985 238399.9513 368760.8835 110672.6065 262378.1885 139290.1649 159297.1281 131763.9813 186107.0783 98036.31633 1.254289258 2.431751419 3.761472251 1.128893971 2.676336671 1.4208017 1.62487876 1.344032357 1.898348339 1 16.58102866 -6.27724581 23.96135051 1.489568312 2.282241571 0.230841758 0.721365455 747.23179 1132742.323 0.252035747 0.223121475 5.28E-07 6.27724581 0.792673259 DGHNLISLLEVLSGDSLPR ddPTM_HeLa_A486_30min_R1 2 DGHNLISLLEVLSGDSLPR 19 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;E9PKG0;E9PIA2;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 120.31 9.52E-07 4221200 5106.55 6664 5415 1460.35 5407.4 5857.1 5003.14 4445.4 5961.2 5883.7 FALSE FALSE TRUE 4748.607215 6135.92037 7511.833019 3399.768602 4729.15347 5134.510553 3751.301454 3433.279462 6477.921616 4410.383224 1.076688119 1.391244266 1.703215489 0.770855599 1.072277222 1.164186941 0.850561338 0.778453773 1.46878883 1 12.1066883 -5.268442945 24.96760483 1.007535439 1.390468792 0.341043872 0.238945355 588.876409 2099335.976 0.066533912 0.101166115 5.39E-06 5.268442945 0.382933353 DGHPLS(ph)PERDHLEGLYAK ddPTM_HeLa_A485_30min_R1 2 DGHPLSPERDHLEGLYAK 18 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;A0A087WYL6;Q8TEW8-6;Q8TEW8-3 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 DGHPLS(1)PERDHLEGLYAK;DGHPLS(1)PERDHLEGLYAK ; 168.12 2.03E-12 272270000 163324 186081 168455 202740 293080 201608 281560 325040 189642 270850 TRUE FALSE FALSE 199654.8603 207841.5543 230773.5145 213815.1728 263899.9261 212163.8831 221402.4059 245323.4304 227701.4099 203332.0796 0.981915203 1.022177881 1.134958709 1.051556514 1.297876492 1.043435367 1.088871005 1.206516113 1.119849904 1 17.63347832 -4.658372414 3.242500617 1.126217112 0.987046011 0.244949057 0.081285376 0.30792354 6.172311817 0.020660928 0.067670209 2.20E-05 4.658372414 -0.139171101 DGHRYS(ph)RS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 DGHRYSRSPAR 11 2 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 2 0 DGHRY(0.091)S(0.919)RS(0.991)PAR;DGHRY(0.265)S(0.82)RS(0.915)PAR ; 60.918 0.01815 4235350000 76300 93520 115756 21023.9 120662 61991 82839 78999 79146 60173 TRUE FALSE FALSE 70951.76401 86109.13461 160579.8233 48944.70169 105527.4468 54343.1807 62111.80602 61012.65224 86006.43901 45105.28914 1.573025367 1.909069563 3.560110717 1.085121116 2.339580321 1.204807279 1.377040414 1.352671791 1.906792765 1 15.461009 -5.964046711 1.477149944 1.402322631 2.200509587 0.213128176 0.645812463 0.629450871 2.826031538 0.257214276 0.296248461 1.09E-06 5.964046711 0.798186956 DGKFS(ph)PIQEK ddPTM_HeLa_A485_30min_R1 2 DGKFSPIQEK 10 1 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 DGKFS(1)PIQEK;DGKFS(1)PIQEK ; 120.54 0.0001183 862100000 1715150 1073060 641280 2580100 1523800 1409940 2421200 1896930 1189470 3283300 TRUE FALSE FALSE 2096679.2 1198545.033 878516.1579 2721044.33 1372085.122 1483762.278 1903890.841 1431704.943 1428185.719 2464833.735 0.850637173 0.486257964 0.356420048 1.103946401 0.556664371 0.601972562 0.77242161 0.580852543 0.579424769 1 21.2330589 -10.78671233 4.611574052 1.036273328 0.650715524 0.213834799 0.198756153 0.069871309 0.003231582 0.181403767 0.0457715 1.63E-11 10.78671233 -0.385557804 DGKFS(ph)PIQEK ddPTM_HeLa_A486_30min_R1 3 DGKFSPIQEK 10 1 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 DGKFS(1)PIQEK;DGKFS(1)PIQEK;DGKFS(1)PIQEK ;; 134.9 2.43E-05 1138570000 2216830 1938720 670470 1015870 1464800 2449390 3030730 2697710 1505040 3685540 TRUE FALSE FALSE 2061441.665 1785088.767 930093.9398 2364996.699 1281071.125 2147209.165 2272409.298 2083500.324 1635498.079 2762656.795 0.746180875 0.646149304 0.33666648 0.856058814 0.463709835 0.777226172 0.822544915 0.754165457 0.592001903 1 21.39762492 -6.312257361 23.2940261 0.775908109 0.610287237 0.232226255 0.162233855 275.3404554 126209.6596 0.055204749 0.048686138 4.87E-07 6.312257361 -0.165620872 DGKFS(ph)PIQEKS(ph)PK ddPTM_HeLa_A485_30min_R1 1 DGKFSPIQEKSPK 13 2 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 2 0 DGKFS(1)PIQEKS(1)PK 73.138 0.0059559 141590000 250000 145780 80350 708910 253350 205360 547980 439790 156170 934790 TRUE FALSE FALSE 305611.6375 162827.7029 110074.8086 747635.9582 228125.5844 216112.3321 430899.5964 331930.8129 187511.8865 701764.0565 0.435490582 0.232026279 0.156854441 1.065366559 0.325074478 0.307955829 0.614023463 0.47299489 0.267200756 1 19.42062653 -10.63100244 2.819208015 1.051428593 0.435448757 0.324788768 0.246137137 99237123.01 96950074.44 37382985.35 0.062861884 2.34E-11 10.63100244 -0.615979836 DGLAFNALIHR ddPTM_HeLa_A485_30min_R1 4 DGLAFNALIHR 11 0 O43707;C9JY79;Q9H254-2;Q9H254-4;Q9H254;M0QZQ3 O43707 ACTN4;SPTBN4 "Alpha-actinin-4;Spectrin beta chain, non-erythrocytic 4" 0 0 ;;; ;;; 206.97 2.34E-14 706043000 798342 1061970 948250 860733 1236970 981700 1237000 1350320 912630 1192990 FALSE FALSE TRUE 975930.4237 1186158.154 1299047.135 907752.6643 1113812.924 1033100.294 972704.8446 1019151.903 1095786.47 895599.5484 1.089695082 1.324429156 1.450477658 1.01356981 1.243650609 1.153529271 1.086093496 1.137954909 1.223522803 1 19.77249428 -5.270172619 24.99319945 1.133174629 1.291823489 0.317241914 0.110522631 762.4828645 2182107.884 0.030624144 0.046198369 5.37E-06 5.270172619 0.15864886 DGLAFNALIHR ddPTM_HeLa_A486_30min_R1 4 DGLAFNALIHR 11 0 O43707;C9JY79;Q9H254-2;Q9H254-4;Q9H254;M0QZQ3 O43707 ACTN4;SPTBN4 "Alpha-actinin-4;Spectrin beta chain, non-erythrocytic 4" 0 0 ;;; ;;; 209.97 1.51E-14 769626000 1077710 1165410 890237 444689 1384180 1076866 1222280 1216770 1029326 1228770 FALSE FALSE TRUE 1002168.094 1073058.667 1234960.608 1035258.465 1210563.237 944013.2217 916452.616 939738.0329 1118548.806 921077.994 1.088038256 1.165003044 1.340777454 1.123963955 1.31428961 1.024900419 0.994978299 1.020258913 1.214390978 1 19.8129638 -6.281834889 24.98526303 1.048676427 1.20699786 0.41183391 0.09290056 824.9084364 1010540.751 0.032490621 0.028688606 5.23E-07 6.281834889 0.158321433 DGLAPEKT(ph)SPDRDK ddPTM_HeLa_A485_30min_R1 1 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 DGLAPEKT(0.5)S(0.5)PDRDK 116.61 0.00075213 487200000 295050 173020 89589 551500 234310 212330 398630 313540 165700 684210 TRUE FALSE FALSE 360682.8546 193253.1839 122731.6992 581627.0485 210981.2737 223447.2705 313459.444 236643.8234 198954.4701 513649.039 0.702197079 0.376235852 0.238940775 1.132343301 0.410749866 0.435019349 0.610259964 0.460711119 0.387335428 1 18.97042342 -11.06259076 2.446256867 1.672721708 0.527224659 0.264993348 0.235721288 12959872.43 4611639.077 48666474.24 0.062073522 8.66E-12 11.06259076 -1.145497049 DGLAPEKT(ph)SPDRDK ddPTM_HeLa_A486_30min_R1 2 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 DGLAPEKT(0.672)S(0.328)PDRDK;DGLAPEKT(0.667)S(0.333)PDRDK ; 148.19 3.40E-07 1709100000 943750 848900 239350 578940 504240 1067390 1376020 1063640 572780 1937450 TRUE FALSE FALSE 877597.9985 781630.0724 332032.73 1347801.578 440993.5173 935706.2742 1031725.242 821472.3911 622429.0316 1452299.909 0.604281521 0.538201557 0.228625457 0.928046314 0.303651825 0.644292731 0.71040784 0.565635504 0.428581609 1 20.46990798 -10.97672393 2.688491298 1.387657575 0.552177479 0.336103194 0.189635856 12280257.08 6337242.887 29586786.98 0.046844079 1.06E-11 10.97672393 -0.835480095 DGLAPEKT(ph)SPDRDKK ddPTM_HeLa_A486_30min_R1 2 DGLAPEKTSPDRDKK 15 3 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 DGLAPEKT(0.81)S(0.19)PDRDKK;DGLAPEKT(0.5)S(0.5)PDRDKK ; 126.4 3.18E-05 1117610000 947080 693150 252234 688660 543890 1061270 1568690 1278860 498790 2184140 TRUE FALSE FALSE 880694.5827 638222.2696 349905.7599 1603235.283 475670.2446 930341.2976 1176187.17 987691.4953 542025.5188 1637217.128 0.537921677 0.389821398 0.213719826 0.979244143 0.290535835 0.56824552 0.718406343 0.603274592 0.331065141 1 20.64281423 -14 0.284654229 4.563480044 0.490932146 0.304955983 0.215904801 298.5708673 2.844717437 630.9311414 0.237664168 1.00E-14 14 -4.072547898 DGLAPEKTS(ph)PDRDK ddPTM_HeLa_A485_30min_R1 5 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 DGLAPEKT(0.013)S(0.987)PDRDK;DGLAPEKT(0.132)S(0.868)PDRDK;DGLAPEKT(0.001)S(0.999)PDRDK;DGLAPEKT(0.081)S(0.919)PDRDK;DGLAPEKT(0.213)S(0.787)PDRDK ;;;; 223.29 5.94E-28 9036030000 4698960 2689090 1530870 9410130 3432220 3539600 6591530 4736140 2674710 10997930 TRUE FALSE FALSE 5744227.441 3003555.684 2097202.518 9924181.574 3090496.126 3724927.983 5183195.768 3574594.239 3211499.763 8256348.453 0.695734618 0.363787418 0.254010902 1.202006145 0.37431755 0.451159251 0.627783069 0.43295099 0.38897338 1 22.97707243 -10.10760025 4.659608537 1.000032005 0.531711332 0.231877801 0.255369084 341483872.7 7.966776299 119183.1091 0.061050299 7.81E-11 10.10760025 -0.468320673 DGLAPEKTS(ph)PDRDK ddPTM_HeLa_A486_30min_R1 3 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 DGLAPEKT(0.056)S(0.944)PDRDK;DGLAPEKT(0.009)S(0.991)PDRDK;DGLAPEKT(0.288)S(0.712)PDRDK ;; 155.94 1.05E-08 8781900000 3566450 2908660 881620 2241920 1772460 4034120 5468010 4383020 2065220 7536300 TRUE FALSE FALSE 3316460.272 2678167.188 1223006.875 5219303.06 1550141.539 3536431.29 4099856.063 3385102.027 2244234.932 5649161.427 0.587071252 0.474082255 0.216493526 0.92390758 0.274402061 0.626009955 0.725745957 0.599222039 0.397268685 1 22.4296053 -14 0.277044491 4.274332694 0.508675502 0.320547159 0.199969337 265.5098139 2.559014089 499.6038873 0.228656985 1.00E-14 14 -3.765657192 DGLGFCALIHR ddPTM_HeLa_A485_30min_R1 1 DGLGFCALIHR 11 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 P12814-2 ACTN1 Alpha-actinin-1 0 0 114.83 0.0012398 25812000 8171 12310 10966 10062 13073 9519.1 12605 13436 7654.1 13409 FALSE FALSE TRUE 9988.61076 13749.54742 15022.77973 10611.66158 11771.40622 10017.50536 9911.838777 10140.79993 9190.207662 10066.38307 0.992274056 1.36588756 1.492371155 1.054168265 1.169377932 0.995144461 0.984647485 1.007392611 0.912960255 1 13.29725779 -5.896163927 1.446926336 0.977367572 1.276246084 0.449990992 0.132865856 0.360969106 1.568348295 0.053383472 0.06537162 1.27E-06 5.896163927 0.298878512 DGLGFCALIHR ddPTM_HeLa_A486_30min_R1 1 DGLGFCALIHR 11 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 P12814-2 ACTN1 Alpha-actinin-1 0 0 103.22 0.0032789 113790000 71202 79782 74059 34677 104970 84704 90668 84250 74157 84697 FALSE FALSE TRUE 66211.10749 73459.78376 102736.6282 80729.80848 91803.68379 74254.08169 67981.90741 65068.11416 80584.98847 63488.31992 1.042886433 1.157059816 1.618197305 1.271569457 1.445993277 1.169570746 1.070778176 1.024883227 1.269288407 1 15.95420358 -6.48004253 6.533755827 1.096496145 1.314223755 0.291213067 0.159660692 0.290305292 33.72847172 0.059341144 0.051202287 3.31E-07 6.48004253 0.21772761 DGLHFLPHASSS(ph)AQSPCGS(ph)PGMKR ddPTM_HeLa_A486_30min_R1 1 DGLHFLPHASSSAQSPCGSPGMKR 24 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y4X4;A0A2R8YGU1;A0A087WXD9;A0A2R8Y6B2;A0A2R8YG52;A0A2R8Y846;A0A2R8YD81 Q3V6T2 CCDC88A Girdin 2 0 DGLHFLPHAS(0.024)S(0.139)S(0.62)AQS(0.218)PCGS(1)PGMKR 93.596 0.0029821 161670000 64599 82716 60308 9547.3 87687 50602 65160 58881 69417 36615 TRUE FALSE FALSE 60070.94369 76161.28291 83660.8727 22226.59689 76688.47881 44359.23972 48856.27881 45475.08166 75434.12145 27446.36568 2.188666594 2.774913218 3.048158495 0.809819309 2.794121441 1.616215431 1.780063684 1.656870793 2.748419311 1 14.74432751 -5.225128212 24.99817169 1.835991154 2.68101284 0.295498479 0.630236588 757.4054741 521429.72 0.161275155 0.279325137 5.95E-06 5.225128212 0.845021686 DGLNDDDFEPYLS(ph)PQAR ddPTM_HeLa_A485_30min_R1 1 DGLNDDDFEPYLSPQAR 17 0 S4R3J8;Q9Y5A9 S4R3J8 YTHDF2 YTH domain-containing family protein 2 1 0 DGLNDDDFEPYLS(1)PQAR 187.75 8.39E-18 166510000 123890 73062 92673 177090 95316 112980 125630 100920 90144 218720 TRUE FALSE FALSE 151448.9031 81605.96535 126956.5991 186763.9783 85826.00437 118895.4581 98788.1242 76169.21176 108235.074 164197.1292 0.922360237 0.496999952 0.773196217 1.137437537 0.522701004 0.724101929 0.601643431 0.463888815 0.659177627 1 17.32506938 DGLNDDDFEPYLS(ph)PQAR ddPTM_HeLa_A486_30min_R1 3 DGLNDDDFEPYLSPQAR 17 0 S4R3J8;Q9Y5A9 S4R3J8 YTHDF2 YTH domain-containing family protein 2 1 0 DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR ;; 388.46 1.74E-135 547135000 241372 340611 297257 131207 355497 456717 410717 416511 359475 412674 TRUE FALSE FALSE 224453.0692 313619.7439 412362.8712 305456.5268 310907.2514 400371.9001 307951.2625 321680.5377 390634.5824 309337.7443 0.725592248 1.013842474 1.333050618 0.98745314 1.005073765 1.294287255 0.995517903 1.039900703 1.262809307 1 18.23882335 -4.323522244 3.77447966 1.112786968 0.707497235 0.451090838 0.128463558 0.196992946 4.943634454 0.031489239 0.193678161 4.75E-05 4.323522244 -0.405289733 DGLNQTTIPVS(ph)PPSTTKPSR ddPTM_HeLa_A485_30min_R1 2 DGLNQTTIPVSPPSTTKPSR 20 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DGLNQTTIPVS(0.977)PPS(0.007)T(0.007)T(0.007)KPS(0.001)R;DGLNQTTIPVS(0.974)PPS(0.008)T(0.008)T(0.008)KPS(0.002)R ; 120.08 3.28E-06 2137090000 469130 433650 352510 545220 569110 441870 613550 544360 400200 671290 TRUE FALSE FALSE 573486.35 484361.5952 482918.1182 575003.988 512447.4101 465005.6299 482460.0303 410854.8565 480516.4691 503949.7572 1.137983186 0.961130725 0.958266397 1.140994672 1.016862103 0.922722203 0.957357402 0.81526948 0.953500745 1 18.94292038 -6.219071886 4.218111412 0.919183238 1.041001828 0.377142564 0.072627451 0.235910187 9.354962694 0.02507898 0.024369367 6.04E-07 6.219071886 0.12181859 DGLNQTTIPVS(ph)PPSTTKPSR ddPTM_HeLa_A486_30min_R1 4 DGLNQTTIPVSPPSTTKPSR 20 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DGLNQTTIPVS(0.995)PPS(0.002)T(0.002)T(0.002)KPSR;DGLNQTTIPVS(0.997)PPS(0.001)T(0.001)T(0.001)KPSR;DGLNQTTIPVS(0.976)PPS(0.007)T(0.007)T(0.007)KPS(0.002)R;DGLNQTTIPVS(0.907)PPS(0.029)T(0.029)T(0.029)KPS(0.008)R ;;; 150.06 6.91E-10 8092780000 1188330 1332930 777141 463130 1199410 1305380 1457820 1358800 967815 1444870 TRUE FALSE FALSE 1105034.204 1227303.772 1078070.808 1078190.045 1048968.814 1144335.488 1093058.017 1049430.902 1051705.983 1083065.147 1.02028415 1.133176315 0.995388699 0.995498791 0.968518668 1.056571242 1.009226471 0.968945317 0.971045912 1 20.04668859 -4.791176906 24.80964609 0.996226598 1.076730217 0.460008406 0.0351345 139.0810874 116033.3832 0.009046995 0.018837555 1.62E-05 4.791176906 0.080503619 DGLNQTTIPVSPPS(ph)TTKPSR ddPTM_HeLa_A485_30min_R1 1 DGLNQTTIPVSPPSTTKPSR 20 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DGLNQTTIPVS(0.324)PPS(0.547)T(0.064)T(0.064)KPSR 184.3 2.62E-19 2066100000 471200 402850 386800 520370 618910 450710 667810 561240 416830 740560 TRUE FALSE FALSE 576016.8144 449959.8032 529893.4161 548796.4955 557289.1473 474308.4787 525126.938 423595.01 500483.9576 555952.021 1.036090872 0.809350063 0.953127961 0.987129239 1.002405111 0.853146424 0.944554419 0.761927278 0.900228686 1 19.08460086 -6.27407924 24.84511708 0.880378258 0.950773168 0.132041432 0.080540029 1393.610242 2739294.537 0.02781165 0.024690562 5.32E-07 6.27407924 0.070394911 DGLPRT(ph)PSR ddPTM_HeLa_A485_30min_R1 6 DGLPRTPSR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DGLPRT(0.996)PS(0.004)R;DGLPRT(0.992)PS(0.008)R;DGLPRT(0.999)PS(0.001)R;DGLPRT(0.998)PS(0.002)R;DGLPRT(0.85)PS(0.15)R;DGLPRT(0.971)PS(0.029)R ;;;;; 121.71 0.00045085 5304920000 1804490 2025270 1937400 2246480 2433400 1865260 2387570 2057980 1958690 2884730 TRUE FALSE FALSE 2205892.575 2262107.709 2654124.882 2369199.514 2191122.152 1962922.129 1877446.165 1553257.178 2351781.117 2165619.901 1.018596373 1.04455436 1.225572817 1.094005238 1.011775959 0.906401963 0.866932449 0.717234441 1.085962092 1 21.04634862 -6.065046807 2.493800753 0.89330384 1.100815233 0.398078733 0.102902623 0.269382633 3.313714652 0.036725084 0.038433854 8.61E-07 6.065046807 0.207511394 DGLPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 5 DGLPRTPSR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DGLPRT(0.992)PS(0.008)R;DGLPRT(0.781)PS(0.219)R;DGLPRT(1)PSR;DGLPRT(0.986)PS(0.014)R;DGLPRT(0.952)PS(0.048)R ;;;; 120.03 0.00054606 6247860000 2280070 2561620 1979340 852511 2782990 2640360 2659640 2698830 2276860 2600930 TRUE FALSE FALSE 2120248.867 2358627.902 2745793.457 1984688.692 2433921.444 2314619.228 1994169.941 2084365.324 2474220.058 1949640.199 1.087507771 1.20977599 1.40835907 1.017976903 1.248395189 1.187203275 1.02283998 1.069102558 1.269064959 1 20.89477647 -6.628726054 8.572894951 1.09626816 1.199331645 0.155508895 0.116991213 0.514192201 37.95263176 0.044359896 0.034296384 2.35E-07 6.628726054 0.103063485 DGLPRTPS(ph)R ddPTM_HeLa_A486_30min_R1 1 DGLPRTPSR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DGLPRT(0.334)PS(0.666)R 92.19 0.0015566 607730000 220550 265340 189290 71357 263310 250480 274070 235730 215750 245870 TRUE FALSE FALSE 205090.5839 244313.492 262588.1574 166122.7022 230283.2045 219578.3243 205494.7872 182059.4249 234451.3837 184302.5517 1.11279297 1.325611012 1.424766803 0.901358666 1.249484624 1.191401434 1.114986121 0.987829107 1.272100585 1 17.49171652 -5.514360328 0.124143457 0.921617413 1.463043234 0.137815216 0.145470626 42.54936709 1.464917541 1.723303771 4.792176319 3.06E-06 5.514360328 0.541425821 DGLPRTPS(ph)RR ddPTM_HeLa_A485_30min_R1 4 DGLPRTPSRR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DGLPRT(0.235)PS(0.765)RR;DGLPRT(0.069)PS(0.931)RR;DGLPRT(0.063)PS(0.937)RR;DGLPRT(0.171)PS(0.829)RR ;;; 96.464 0.0010049 10058500000 612520 891210 817670 698570 1220260 907290 1171000 1311870 818990 958230 TRUE FALSE FALSE 748772.9608 995429.257 1120160.159 736731.1102 1098766.63 954794.3015 920806.2838 990131.8256 983353.7808 719360.8959 1.040886383 1.38376893 1.557160204 1.024146731 1.52742057 1.327281351 1.280033831 1.376404849 1.366982535 1 19.45635621 -10.49097134 6.134180965 0.999753122 1.327308018 0.249842557 0.166201212 0.000532895 4.42E-05 0.15282216 0.037037335 3.23E-11 10.49097134 0.327554896 DGLPRTPS(ph)RR ddPTM_HeLa_A486_30min_R1 2 DGLPRTPSRR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DGLPRT(0.278)PS(0.722)RR;DGLPRT(0.08)PS(0.92)RR ; 64.798 0.014656 2037470000 172877 169550 160541 79523 241740 170833 213216 233493 140148 204099 TRUE FALSE FALSE 160759.215 156114.2405 222706.7746 185133.5629 211418.7151 149757.3614 159867.1016 180331.741 152296.1415 152991.2819 1.050773698 1.020412657 1.45568278 1.210092239 1.381900409 0.97886206 1.044942559 1.178705994 0.995456339 1 17.22308992 -6.280093308 24.97826275 1.051096838 1.224598516 0.321576398 0.133232054 1146.261718 1534879.401 0.049108822 0.043385067 5.25E-07 6.280093308 0.173501678 DGLQNEK(ac)NIVSTPVK ddPTM_HeLa_A485_30min_R1 1 DGLQNEKNIVSTPVK 15 1 P35914-3;P35914-2;P35914 P35914-3 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" 0 1 DGLQNEK(1)NIVSTPVK 173.25 1.86E-10 0 4196.4 5473.1 4898.1 6659.9 8307.7 6875.1 7197.5 7273.2 5369 9797.9 FALSE TRUE FALSE 5129.874703 6113.131435 6710.111017 7023.713473 7480.556218 7235.069605 5659.695327 5489.436296 6446.509053 7355.463847 0.697423685 0.831100739 0.912262117 0.954897423 1.017006728 0.983631999 0.769454578 0.746307291 0.876424545 1 12.84460061 -4.359185556 2.479511766 0.901549453 0.674482748 0.354334206 0.086684734 0.546344845 4.857794972 0.025830915 0.238212792 4.37E-05 4.359185556 -0.227066705 DGMTIFGQRQTPK(ac)K(ac)R ddPTM_HeLa_A486_30min_R1 1 DGMTIFGQRQTPKKR 15 3 P52954 P52954 LBX1 Transcription factor LBX1 0 2 DGMTIFGQRQTPK(1)K(1)R 45.863 0.030636 392260000 126220 198160 186960 54645 264990 200310 224350 211540 186400 170210 FALSE TRUE FALSE 117372.6298 182457.0799 259355.919 127216.3216 231752.4833 175597.7888 168215.2571 163376.9599 202557.3021 127588.3081 0.919932489 1.430045453 2.032756158 0.997084478 1.816408468 1.376284327 1.318422194 1.280501029 1.587585141 1 16.9611366 -10.4729325 2.742740989 0.984702242 1.42731063 0.13252777 0.319718218 32217164.88 34428269.46 3755833.784 0.08054366 3.37E-11 10.4729325 0.442608388 DGNASGTTLLEALDCILPPTRPTDK(ac)PLR ddPTM_HeLa_A485_30min_R1 1 DGNASGTTLLEALDCILPPTRPTDKPLR 28 2 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 1 DGNASGTTLLEALDCILPPTRPTDK(1)PLR 135.35 4.00E-12 10292000 660.29 1386.3 1833.8 2600.9 2388.9 1140.1 1761.3 797.05 1299 4349 FALSE TRUE FALSE 807.1692325 1548.415726 2512.198931 2742.980581 2151.052728 1199.793873 1384.983867 601.5722378 1559.697385 3264.874337 0.247228269 0.47426503 0.769462672 0.840148899 0.65884702 0.367485468 0.424207404 0.184255863 0.477720495 1 11.67281175 -11.39529751 2.147496098 4.520910811 0.501456927 0.364189203 0.200444102 7333947.134 686676.1362 125538219.6 0.057496995 4.02E-12 11.39529751 -4.019453884 DGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_HeLa_A485_30min_R1 4 DGNASGTTLLEALDCILPPTRPTDKPLR 28 2 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ;;; ;;; 242.94 7.96E-60 329238000 159467 110728 122219 237167 187722 116423 172002 132204 152577 311117 FALSE FALSE TRUE 194939.884 123676.6764 167432.8941 250122.8327 169031.7385 122518.7283 135252.3676 99780.76171 183197.8044 233561.2576 0.834641353 0.529525649 0.716869295 1.070908914 0.723714799 0.524567857 0.579087341 0.427214525 0.784367263 1 17.83344146 -3.95992371 13.49294083 0.690446891 1.335260036 0.031557234 0.196546215 3291284.152 36704814 0.050753255 49500324.64 0.000109667 3.95992371 0.644813145 DGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_HeLa_A486_30min_R1 4 DGNASGTTLLEALDCILPPTRPTDKPLR 28 2 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ;;; ;;; 262.76 2.30E-63 435345000 110151.9 148050.3 92056.1 74972 184324.2 161840.6 157705.8 161721.6 135104.2 133348.3 FALSE FALSE TRUE 102430.8206 136318.255 127702.6873 174538.6049 161204.5401 141874.3522 118246.1408 124901.122 146815.1408 99957.01773 1.024748667 1.363768729 1.277576004 1.746136578 1.612738592 1.419353593 1.182969875 1.249548305 1.468782725 1 16.60902024 -6.745974815 22.59580803 1.246120979 1.424235907 0.148031359 0.209305095 163.5186891 238922.2827 0.084575049 0.065174484 1.79E-07 6.745974815 0.178114928 DGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYK ddPTM_HeLa_A485_30min_R1 1 DGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYK 36 3 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 88.683 1.02E-06 42462000 4317.7 4395.7 3144.5 5209.2 6070.7 5457.6 8079.3 9305.1 4535.2 7695.8 FALSE FALSE TRUE 5278.157469 4909.738877 4307.781404 5493.765406 5466.279792 5743.351497 6353.091553 7023.009635 5445.373041 5777.378691 0.913590358 0.849821198 0.745629053 0.950909694 0.946152241 0.994110271 1.099649494 1.215604864 0.942533514 1 12.49619935 -6.037293296 1.322479624 1.077335313 0.844409943 0.544313343 0.082147963 0.30593498 1.10432515 0.035934588 0.039308732 9.18E-07 6.037293296 -0.23292537 DGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYK ddPTM_HeLa_A486_30min_R1 1 DGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYK 36 3 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 201.01 3.74E-49 38758000 57648 62846 32217 37030 64973 72402 99810 92321 55841 98987 FALSE FALSE TRUE 53607.17289 57865.85408 44692.2852 86207.71139 56823.48049 63469.77737 74836.48232 71301.52365 60681.34284 74200.0109 0.722468531 0.779863148 0.602321814 1.161828824 0.765814988 0.855387709 1.008577781 0.960936835 0.817807735 1 16.17913178 -5.238893613 24.99997994 0.929240816 0.709382367 0.478844425 0.112952847 737.4048061 817673.9125 0.029850697 0.051656126 5.77E-06 5.238893613 -0.219858449 DGPIS(ph)PK ddPTM_HeLa_A485_30min_R1 3 DGPISPK 7 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 DGPIS(1)PK;DGPIS(1)PK;DGPIS(1)PK ;; 84.615 0.0088385 1998850000 3424600 2583580 1664030 6279500 2850760 2714730 4390100 3620770 2281580 8170200 TRUE FALSE FALSE 4186390.455 2885707.207 2279623.943 6622533.184 2566928.325 2856869.065 3452119.271 2732770.48 2739472.178 6133519.501 0.682542944 0.470481459 0.371666535 1.079728072 0.418508219 0.465779731 0.56282845 0.445546881 0.446639515 1 22.54828372 -10.52298135 2.76547973 1.021647163 0.548403079 0.323406553 0.195563276 27853755.79 28850239.88 4526916.856 0.050464121 3.00E-11 10.52298135 -0.473244084 DGPIS(ph)PK ddPTM_HeLa_A486_30min_R1 3 DGPISPK 7 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 DGPIS(1)PK;DGPIS(1)PK;DGPIS(1)PK ;; 100.25 0.0044971 2108960000 4264700 4284800 1886220 2420360 2960500 5114100 6284500 5090300 3756030 8887500 TRUE FALSE FALSE 3965766.553 3945256.843 2616614.899 5634720.398 2589166.484 4483174.338 4712051.629 3931349.81 4081605.705 6662012.152 0.595280594 0.592201988 0.392766455 0.845798577 0.388646317 0.672945986 0.707301566 0.590114476 0.612668607 1 22.66752655 -14 0.248412211 3.411011976 0.563072567 0.476497758 0.127266132 152.0682169 1.511022865 185.8675912 0.178078613 1.00E-14 14 -2.847939409 DGPQTSNSS(ph)MK ddPTM_HeLa_A486_30min_R1 1 DGPQTSNSSMK 11 0 Q15147-4 Q15147-4 1 0 DGPQTS(0.001)NS(0.062)S(0.936)MK 99.404 0.0014789 528460000 264620 270730 181090 131550 283570 328100 409200 406410 214940 381920 TRUE FALSE FALSE 246071.5045 249276.3688 251212.8978 306255.0482 248002.0064 287622.3579 306813.8319 313879.3149 233571.1723 286284.7461 0.85953411 0.870728784 0.877493129 1.06975678 0.866277403 1.004672312 1.071708626 1.09638854 0.815870127 1 18.12709128 -5.153521846 7.585871678 0.992078576 0.867725118 0.300235099 0.083941605 0.34106938 21.37032007 0.022694903 0.039546234 7.02E-06 5.153521846 -0.124353459 DGPS(ph)SAPAT(ph)PTKAPYSPTTSK ddPTM_HeLa_A486_30min_R1 1 DGPSSAPATPTKAPYSPTTSK 21 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 2 0 DGPS(0.5)S(0.5)APAT(0.976)PT(0.023)KAPYSPTTSK 63.573 0.0020517 0 282080 279510 93214 209450 223900 379920 485690 442460 184130 595410 TRUE FALSE FALSE 262307.6487 257360.6096 129308.9572 487610.185 195816.3742 333049.3331 364165.2249 341721.5168 200090.5367 446315.4605 0.587718042 0.576633866 0.289725471 1.092523625 0.438739841 0.746219575 0.815936836 0.765650189 0.448316391 1 18.76770426 -14 0.097700144 1.993478567 0.421489104 0.189119739 0.217990031 330.1324886 2.20163186 69.18910857 3.890730855 1.00E-14 14 -1.571989463 DGPSAGCTIVTALLSLAMGRPVR ddPTM_HeLa_A485_30min_R1 3 DGPSAGCTIVTALLSLAMGRPVR 23 1 K7ERR6;K7EJE8;K7EKE6;P36776-3;P36776-2;P36776 K7ERR6 LONP1 "Lon protease homolog, mitochondrial" 0 0 ;; ;; 145.88 5.68E-12 54312200 65762 74663 55843 63691 75883 65241 96043 89869 46951 118375 FALSE FALSE TRUE 80390.53002 83394.18837 76501.64952 67170.27806 68327.82208 68656.91788 75522.62845 67828.48684 56373.63504 88866.29103 0.904623441 0.938423191 0.860862411 0.755857787 0.768883468 0.772586738 0.849845623 0.763264519 0.634364666 1 16.43934866 -5.032293919 3.703119305 0.783272436 0.919864561 0.260830624 0.087069727 0.268931508 7.805792849 0.02286602 0.046132857 9.28E-06 5.032293919 0.136592124 DGPSAGCTIVTALLSLAMGRPVR ddPTM_HeLa_A486_30min_R1 1 DGPSAGCTIVTALLSLAMGRPVR 23 1 K7ERR6;K7EJE8;K7EKE6;P36776-3;P36776-2;P36776 K7ERR6 LONP1 "Lon protease homolog, mitochondrial" 0 0 91.64 0.001092 13344000 16368 18869 13125 9096.6 23076 16564 22096 20830 18230 21700 FALSE FALSE TRUE 15220.68772 17373.75172 18207.3515 21177.34452 20181.5929 14520.50209 16567.34709 16087.46372 19810.19108 16266.17876 0.935726082 1.068090544 1.119337969 1.301924984 1.240708909 0.892680593 1.018515002 0.98901309 1.217876145 1 13.98958775 -6.253039574 24.97159341 1.02261141 1.138151046 0.175577768 0.118425312 1182.98924 3516884.442 0.042114955 0.041449739 5.58E-07 6.253039574 0.115539636 DGPSSAPATPTKAPYS(ph)PTTSK ddPTM_HeLa_A485_30min_R1 2 DGPSSAPATPTKAPYSPTTSK 21 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 DGPSSAPATPTKAPY(0.07)S(0.63)PT(0.223)T(0.06)S(0.016)K;DGPSSAPATPTKAPYS(0.952)PT(0.038)T(0.008)S(0.002)K ; 105.73 5.59E-05 184020000 275000 356750 152462 237770 377560 465330 683280 778060 242610 347930 TRUE FALSE FALSE 336172.8013 398468.8092 208864.0383 250758.773 339968.8007 489693.9593 537291.6461 587239.565 291299.6016 261197.4542 1.287044708 1.525546298 0.799640406 0.960035288 1.301577773 1.874803722 2.057032477 2.248259145 1.115246711 1 17.99478131 -6.133601852 4.456700611 1.759796822 1.144751349 0.2498804 0.406889676 0.275906715 8.762301128 0.137002864 0.137665152 7.35E-07 6.133601852 -0.615045474 DGPSSAPATPTKAPYS(ph)PTTSK ddPTM_HeLa_A486_30min_R1 1 DGPSSAPATPTKAPYSPTTSK 21 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 DGPSSAPATPTKAPYS(0.995)PT(0.004)T(0.001)SK 121.62 5.08E-06 197300000 195080 149930 55373 85696 164290 149330 224080 237040 86424 275860 TRUE FALSE FALSE 181405.8994 138049.0008 76814.90854 199504.6188 143683.2163 130907.1829 168012.8139 183071.1665 93915.30191 206782.8605 0.877277251 0.66760369 0.371476187 0.964802491 0.694850704 0.633065925 0.812508414 0.885330468 0.454173531 1 17.65775708 -10.44522982 3.404427137 1.003717799 0.709203055 0.193585254 0.179473042 150133212.6 176453591.1 5264224.824 0.043731959 3.59E-11 10.44522982 -0.294514744 DGQDAIAQS(ph)PEK ddPTM_HeLa_A485_30min_R1 4 DGQDAIAQSPEK 12 0 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK ;;; 251.74 5.21E-29 4538220000 6267400 4111160 2568810 10693800 4576510 4276060 6670330 4218540 3787440 13530900 TRUE FALSE FALSE 7661561.508 4591924.4 3519119.716 11277975.22 4120856.595 4499947.89 5245159.504 3183936.451 4547544.468 10157895.65 0.75424692 0.452054693 0.346441806 1.110266891 0.405680147 0.443000012 0.516362806 0.313444493 0.447685685 1 23.27609822 -10.0225202 4.59825896 1.000014174 0.528082388 0.280985312 0.224444743 66011638.02 47960394.44 8927.575528 0.054552676 9.49E-11 10.0225202 -0.471931785 DGQDAIAQS(ph)PEK ddPTM_HeLa_A486_30min_R1 4 DGQDAIAQSPEK 12 0 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK ;;; 208.39 2.30E-17 5004920000 7845750 7712750 2622475 3579657 4592096 8877990 9917590 7952320 6496680 14260260 TRUE FALSE FALSE 7295803.44 7101563.601 3637967.552 8333622.402 4016112.5 7782713.859 7436104.084 6141750.334 7059817.453 10689398.08 0.68252706 0.664355799 0.340334182 0.779615685 0.375709883 0.72807784 0.695652274 0.574564656 0.66045042 1 23.34967728 -11.03631697 0.335958918 1.428390784 0.58286353 0.428251115 0.136456101 34.77189164 1.757569748 11.57967956 0.112032248 9.20E-12 11.03631697 -0.845527254 DGQDAIAQS(ph)PEKESK ddPTM_HeLa_A485_30min_R1 4 DGQDAIAQSPEKESK 15 1 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(0.999)PEKES(0.001)K ;;; 259.64 1.11E-50 6330240000 2311660 1268918 682880 5013350 1898920 1884860 3870910 2582170 1412809 6934850 TRUE FALSE FALSE 2825880.792 1417306.922 935505.729 5287216.616 1709856.857 1983548.355 3043858.456 1948888.759 1696346.807 5206119.521 0.54279983 0.272238645 0.179693479 1.015577263 0.328432117 0.38100323 0.584669338 0.374345758 0.325837085 1 22.311777 -9.959574355 4.294282581 1.000017887 0.445580885 0.360547507 0.221752963 118594505.4 242157414.6 33061.41861 0.056951119 1.10E-10 9.959574355 -0.554437002 DGQDAIAQS(ph)PEKESK ddPTM_HeLa_A486_30min_R1 4 DGQDAIAQSPEKESK 15 1 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(1)PEKESK;DGQDAIAQS(0.999)PEKES(0.001)K ;;; 265.6 1.45E-49 6111880000 1859770 1479090 490500 1349570 1197780 2259030 3397830 2655140 1233700 4064620 TRUE FALSE FALSE 1729409.727 1361881.522 680434.736 3141867.163 1047543.264 1980333.847 2547656.995 2050622.583 1340638.109 3046812.696 0.567612748 0.44698564 0.223326736 1.031198002 0.343816102 0.649969015 0.836171189 0.673038611 0.4400133 1 21.53886938 -13.99999999 0.099380892 2.245413254 0.311717417 0.246773058 0.22340469 272.1075104 1.839178407 71.39270812 3.82820554 1.00E-14 13.99999999 -1.933695837 DGQDAIAQS(ph)PEKESKDYEMNANHK ddPTM_HeLa_A485_30min_R1 1 DGQDAIAQSPEKESKDYEMNANHK 24 2 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(1)PEKESKDYEMNANHK 143.07 1.76E-09 309570000 177660 108220 78617 459420 298940 250880 638930 511110 176070 865210 TRUE FALSE FALSE 217179.8541 120875.3876 107700.6998 484516.9513 269176.484 264015.6889 502417.3859 385759.4711 211405.634 649529.07 0.334365103 0.186096963 0.165813518 0.745951142 0.414417917 0.406472475 0.773510239 0.593906399 0.325475246 1 19.30903457 -10.28693935 0.111258496 1.756760582 3.56E-16 0.500017542 0.184117375 45.26815918 0.910586247 13.13342981 3.239066701 5.16E-11 10.28693935 -1.756760582 DGQDAIAQS(ph)PEKESKDYEMNANHK ddPTM_HeLa_A486_30min_R1 2 DGQDAIAQSPEKESKDYEMNANHK 24 2 Q9NWH9;H7BXE3;H0YL55 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(0.999)PEKES(0.001)KDYEMNANHK;DGQDAIAQS(1)PEKESKDYEMNANHK ; 139.61 2.49E-07 486410000 190530 153984 61015 275808 226390 291817 575010 532110 140838 544640 TRUE FALSE FALSE 177174.8309 141781.747 84641.64204 642094.9626 197994.0552 255815.5855 431136.4162 410960.1689 153045.9512 408258.599 0.433976973 0.347284166 0.207323599 1.572765311 0.484972161 0.626601831 1.056037564 1.006617301 0.374875022 1 18.63912375 DGQDAIAQS(ph)PEKESKDYEMNANHKDGK ddPTM_HeLa_A485_30min_R1 1 DGQDAIAQSPEKESKDYEMNANHKDGK 27 3 Q9NWH9;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(0.991)PEKES(0.009)KDYEMNANHKDGK 180.33 4.17E-20 398840000 68683 44226 15920 130260 108680 145280 336630 384070 63499 272880 TRUE FALSE FALSE 83961.2964 49397.84598 21809.47049 137375.774 97859.4376 152886.6362 264706.2505 289876.2303 76242.66685 204856.038 0.409855122 0.24113444 0.106462425 0.670596656 0.477698576 0.74631257 1.292157425 1.415024098 0.372176811 1 17.64425089 -6.168787573 1.456812138 1.046220637 0.305723758 0.515143012 0.291424993 0.317501658 1.357259284 0.128842546 0.125572285 6.78E-07 6.168787573 -0.740496879 DGQDAIAQS(ph)PEKESKDYEMNANHKDGK ddPTM_HeLa_A486_30min_R1 1 DGQDAIAQSPEKESKDYEMNANHKDGK 27 3 Q9NWH9;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(0.994)PEKES(0.006)KDYEMNANHKDGK 110.7 0.00036194 291400000 40242 27901 15607 72319 54537 59640 136030 126380 24132 145920 TRUE FALSE FALSE 37421.24361 25690.02315 21650.44837 168362.2868 47696.46092 52282.22318 101993.8552 97606.03286 26223.78119 109380.6822 0.342119311 0.23486801 0.197936673 1.539232371 0.436059274 0.477984066 0.932466804 0.892351655 0.23974783 1 16.73899844 DGQS(ph)SPQPSPR ddPTM_HeLa_A485_30min_R1 3 DGQSSPQPSPR 11 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 DGQS(0.573)S(0.427)PQPSPR;DGQS(0.653)S(0.346)PQPS(0.001)PR;DGQS(0.892)S(0.108)PQPSPR ;; 158.47 1.64E-07 2469903000 408023 515250 449279 528549 621503 545405 668925 698594 463798 746630 TRUE FALSE FALSE 498786.3087 575504.0054 615485.9982 557422.2935 559623.9791 573961.5624 526003.7091 527262.7261 556878.0044 560508.8817 0.889881186 1.026752696 1.098084291 0.994493239 0.998421251 1.024000834 0.938439561 0.940685765 0.993522177 1 19.09637771 -6.753489531 24.99583436 0.963219021 1.009666001 0.104785116 0.051393765 349.9829278 1100415.738 0.02035414 0.015475298 1.76E-07 6.753489531 0.046446979 DGQSS(ph)PQPSPR ddPTM_HeLa_A485_30min_R1 2 DGQSSPQPSPR 11 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 DGQS(0.032)S(0.968)PQPSPR;DGQS(0.189)S(0.811)PQPSPR ; 174.51 1.69E-08 1773346000 1358597 1512338 1411149 1570708 1877898 1654181 1925793 2075732 1322305 2100026 TRUE FALSE FALSE 1660812.216 1689192.774 1933191.738 1656511.801 1690927.881 1740791.359 1514331.593 1566655.472 1587679.485 1576528.166 1.05346181 1.071463745 1.226233555 1.050734035 1.072564333 1.104192996 0.960548391 0.993737699 1.007073339 1 20.58831951 -6.753900884 24.99920785 0.989817996 1.098043065 0.53652502 0.048296359 137.3445121 455464.2243 0.019318187 0.014665935 1.76E-07 6.753900884 0.108225069 DGQSS(ph)PQPSPR ddPTM_HeLa_A486_30min_R1 4 DGQSSPQPSPR 11 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 DGQS(0.033)S(0.967)PQPSPR;DGQS(0.005)S(0.995)PQPS(0.001)PR;DGQS(0.166)S(0.834)PQPSPR;DGQS(0.001)S(0.999)PQPSPR ;;; 208.23 5.73E-15 3633800000 3271130 3586659 2534471 1387054 3741162 3536900 4116317 3953421 2936900 4163253 TRUE FALSE FALSE 3041840.679 3302439.078 3515886.047 3229131.81 3271910.577 3100553.239 3086370.949 3053313.341 3191472.857 3120747.351 0.974715457 1.058220582 1.126616689 1.03473029 1.048438149 0.993529078 0.988984561 0.978391711 1.022663003 1 21.57346013 -6.235320777 4.645595098 0.994617163 1.053228562 0.335892024 0.036111735 0.232016378 13.02074563 0.012904279 0.012428805 5.82E-07 6.235320777 0.058611399 DGQVINETS(ph)QHHDDLE ddPTM_HeLa_A485_30min_R1 4 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 1 0 DGQVINET(0.096)S(0.904)QHHDDLE;DGQVINET(0.009)S(0.991)QHHDDLE;DGQVINET(0.001)S(0.999)QHHDDLE;DGQVINET(0.039)S(0.961)QHHDDLE ;;; 245.67 1.03E-41 18603400000 4129170 4433540 4086330 4030230 6225580 4400540 5226450 5738780 3911720 5081960 TRUE FALSE FALSE 5047689.621 4952003.936 5598033.513 4250391.26 5605739.396 4630945.47 4109776.261 4331335.207 4696766.324 3815120.899 1.323074617 1.297993974 1.467327946 1.114090843 1.469347773 1.213839769 1.077233558 1.135307457 1.231092395 1 21.86329735 -6.510499221 8.512269957 1.125225352 1.329018603 0.489120301 0.107383661 0.154228255 82.69153205 0.037202112 0.030962672 3.09E-07 6.510499221 0.20379325 DGQVINETS(ph)QHHDDLE ddPTM_HeLa_A486_30min_R1 4 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 1 0 DGQVINET(0.042)S(0.958)QHHDDLE;DGQVINET(0.065)S(0.935)QHHDDLE;DGQVINET(0.005)S(0.995)QHHDDLE;DGQVINETS(1)QHHDDLE ;;; 224.15 6.67E-34 21107700000 5679100 5872700 4613010 2054070 6446000 5208150 6160000 6274100 4652910 5644700 TRUE FALSE FALSE 5281024.417 5407325.864 6399291.013 4781978.767 5637482.573 4565621.406 4618702.846 4845624.393 5056227.985 4231230.379 1.248106093 1.277955909 1.512394845 1.130162704 1.332350656 1.079029265 1.09157442 1.145204576 1.194978182 1 22.01264581 -6.096076133 1.667181565 1.109368059 1.316743038 0.451803196 0.104125998 0.354691086 1.975253842 0.041259298 0.042478174 8.02E-07 6.096076133 0.207374979 DGQVINETSQHHDDLE ddPTM_HeLa_A485_30min_R1 4 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 0 0 ;;; ;;; 236.78 6.53E-33 3023107000 1376291 2310570 2476850 772846 2942590 1726120 2320640 2564640 2044370 1840720 FALSE FALSE TRUE 1682442.185 2580771.062 3393139.885 815064.62 2649615.408 1816496.974 1824816.306 1935658.019 2454656.307 1381862.38 1.217517901 1.867603533 2.455483219 0.58983053 1.917423505 1.314528133 1.320548509 1.400760341 1.776339195 1 20.39818251 -5.248092705 24.99733282 1.371314592 1.84894163 0.216049868 0.445474808 1302.95642 2440337.332 0.117276157 0.201625045 5.65E-06 5.248092705 0.477627038 DGQVINETSQHHDDLE ddPTM_HeLa_A486_30min_R1 2 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 0 0 ; ; 218.28 3.71E-33 2905700000 2570100 2782200 2667300 194551 3434100 1988300 2345000 2339300 2574400 1195520 FALSE FALSE TRUE 2389949.262 2561728.339 3700149.993 452924.5601 3003363.156 1743003.762 1758256.197 1806692.457 2797551.065 896154.0105 2.666895683 2.858580455 4.128921982 0.505409288 3.351391749 1.944982382 1.962002264 2.016051299 3.12173023 1 19.77338717 -8.61660815 0.11154099 1.32E-14 3.74851921 0.184472025 0.937310961 37.01615264 1.731151769 35.26578477 19.80413404 2.42E-09 8.61660815 3.74851921 DGQWFTDWDAVPHSR ddPTM_HeLa_A485_30min_R1 3 DGQWFTDWDAVPHSR 15 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 0 ;; ;; 166.92 1.66E-11 273000000 174498 235423 233480 179930 286243 242403 285503 324303 194201 255612 FALSE FALSE TRUE 213314.4781 262953.6719 319853.9679 189759.1203 257743.6419 255094.8463 224502.9517 244767.1808 233175.3594 191892.6326 1.111634539 1.370316663 1.666838188 0.988881739 1.343165907 1.329362377 1.169940444 1.275542356 1.215134506 1 17.5499398 -9.564349833 0.278610177 0.869106475 1.33389694 0.206006146 0.169355622 16.22786213 1.401981974 2.103320299 0.235878763 2.73E-10 9.564349833 0.464790465 DGQWFTDWDAVPHSR ddPTM_HeLa_A486_30min_R1 1 DGQWFTDWDAVPHSR 15 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 0 142.01 3.46E-07 44703000 49107 53626 46335 16841 69440 60025 62331 58453 47533 66346 FALSE FALSE TRUE 45664.85289 49376.48046 64277.15289 39206.6991 60730.1877 52619.72579 46735.12453 45144.52792 51653.19871 49732.52976 0.918208929 0.992840716 1.292456933 0.788351192 1.221136105 1.058054477 0.939729484 0.907746462 1.038619973 1 15.6019022 -6.754606185 24.40017699 0.963836183 1.050360468 0.062945686 0.137070515 318.1402795 1136029.527 0.051692487 0.039092228 1.76E-07 6.754606185 0.086524285 DGRHPQGEQMYR ddPTM_HeLa_A485_30min_R1 4 DGRHPQGEQMYR 12 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;;; ;;; 113.07 0.0011623 579570000 187773 323517 363806 168150 367322 271010 314431 337049 288603 222061 FALSE FALSE TRUE 229542.456 361349.4989 498392.9786 177335.6087 330750.1319 285199.6645 247250.2482 254387.2043 346522.9749 166705.2794 1.376935732 2.167594813 2.989665236 1.063767202 1.984041136 1.710801635 1.483157876 1.525969694 2.078656273 1 17.34694027 -5.279830802 24.99898302 1.593464703 2.177018406 0.257633681 0.484958587 1160.09296 1576881.296 0.13472134 0.200217746 5.25E-06 5.279830802 0.583553703 DGRHPQGEQMYR ddPTM_HeLa_A486_30min_R1 1 DGRHPQGEQMYR 12 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 101.72 0.0030498 79892000 17895 14516 16708 6048.4 15304 12131 15152 15714 9725.7 16268 FALSE FALSE TRUE 16640.65291 13365.69929 23177.78506 14080.98087 13384.42962 10634.40056 11360.80934 12136.26523 10568.73151 12194.38691 1.364615788 1.096053405 1.900692935 1.154710029 1.097589384 0.872073408 0.931642519 0.995233735 0.866688222 1 13.57392961 -5.661450685 2.846255356 0.94621294 1.427190501 0.547605643 0.197480724 0.199840658 3.267219397 0.061384235 0.081694453 2.18E-06 5.661450685 0.48097756 DGS(ph)FGEGLTMK ddPTM_HeLa_A486_30min_R1 2 DGSFGEGLTMK 11 0 Q9ULT0;Q9ULT0-4;G5E9G4 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 DGS(1)FGEGLTMK;DGS(0.995)FGEGLT(0.005)MK ; 154.74 3.83E-07 469170000 476940 479740 220180 281610 383430 502700 616100 532640 352830 803650 TRUE FALSE FALSE 443508.9689 441723.6552 305439.5926 655602.3118 335336.6341 440681.9851 461945.2636 411369.4994 383413.5885 602410.8091 0.736223458 0.733259843 0.507028739 1.088297723 0.556657731 0.731530674 0.766827647 0.682872042 0.63646532 1 19.20038813 -10.13785862 4.658041161 1.000027266 0.71717541 0.2498918 0.147865856 138417577.1 2.191080584 40479.75147 0.034891984 7.28E-11 10.13785862 -0.282851857 DGS(ph)PEAPAS(ph)PEREEVALSEYK ddPTM_HeLa_A485_30min_R1 2 DGSPEAPASPEREEVALSEYK 21 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 DGS(1)PEAPAS(1)PEREEVALSEYK;DGS(1)PEAPAS(1)PEREEVALSEYK ; 236.6 3.32E-46 440130000 663170 481930 348340 1378210 730540 593120 1098800 802460 502210 1727150 TRUE FALSE FALSE 810689.8786 538287.5213 477205.4616 1453498.122 657804.8725 624174.8461 864032.4036 605655.4268 602998.9405 1296603.291 0.625241263 0.415152055 0.368042766 1.121004499 0.507329325 0.481392304 0.666381467 0.467109278 0.465060474 1 20.30630571 -10.17778308 3.580331159 1.000457387 0.569898588 0.28805123 0.203491202 61447135.92 98791077.17 339386.9831 0.052185105 6.64E-11 10.17778308 -0.430558799 DGS(ph)PEAPAS(ph)PEREEVALSEYK ddPTM_HeLa_A486_30min_R1 1 DGSPEAPASPEREEVALSEYK 21 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 DGS(1)PEAPAS(1)PEREEVALSEYK 228.62 6.73E-36 368610000 438970 380310 170610 353900 290490 526030 690800 571920 329620 937490 TRUE FALSE FALSE 408200.4698 350172.8505 236674.7611 823897.0851 254054.0355 461133.7669 517954.5335 441706.3009 358191.727 702736.402 0.580872812 0.498299006 0.336790239 1.172412704 0.361521098 0.656197353 0.737053797 0.6285519 0.509709937 1 19.42262411 -11.41938628 2.137655764 4.051517371 0.612795664 0.217373112 0.222444699 5716284.393 424118.3847 84722519.02 0.054414186 3.81E-12 11.41938628 -3.438721707 DGSASAAAK(ac)K ddPTM_HeLa_A485_30min_R1 2 DGSASAAAKK 10 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2;Q68E03 D6REM6 MATR3;DKFZp686L22104 Matrin-3 0 1 ; DGSASAAAK(1)K;DGSASAAAK(1)K 154.05 1.30E-06 20465000 30839 33051 24222 43714 41702 35178 50583 51796 38306 68896 FALSE TRUE FALSE 37699.02916 36916.02694 33182.72576 46101.98513 37550.00246 37019.86568 39775.52882 39092.94979 45993.66284 51721.49514 0.728885139 0.713746322 0.641565478 0.891350589 0.726003809 0.715753974 0.76903285 0.755835648 0.889256251 1 15.65847636 -7.938689166 2.067641653 1.000259265 0.740025029 0.670232666 0.059276456 0.179073066 1.705548402 0.056815368 0.01594581 1.15E-08 7.938689166 -0.260234236 DGSASAAAK(ac)K ddPTM_HeLa_A486_30min_R1 2 DGSASAAAKK 10 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2;Q68E03 D6REM6 MATR3;DKFZp686L22104 Matrin-3 0 1 ; DGSASAAAK(1)K;DGSASAAAK(1)K 179.81 1.09E-08 41798000 59484 54623 44856 24482 68555 72053 72573 65973 60293 80588 FALSE TRUE FALSE 55314.47878 50294.47455 62225.44449 56995.33325 59956.19265 63163.83344 54414.4678 50952.38808 65519.24579 60408.24026 0.915677705 0.832576389 1.030082059 0.943502625 0.992516789 1.04561618 0.900778893 0.843467511 1.084607754 1 15.88245774 -4.755989655 24.99997184 0.973128481 0.874127043 0.266364156 0.069570717 184.1702718 844834.6 0.017836326 0.044391912 1.75E-05 4.755989655 -0.099001437 DGSGT(ph)PSRHS(ph)LSGS(ph)SPGMK ddPTM_HeLa_A485_30min_R1 3 DGSGTPSRHSLSGSSPGMK 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 DGS(0.122)GT(0.877)PS(0.007)RHS(0.929)LS(0.069)GS(0.819)S(0.176)PGMK;DGS(0.015)GT(0.984)PS(0.001)RHS(0.992)LS(0.01)GS(0.693)S(0.305)PGMK;DGS(0.437)GT(0.561)PS(0.028)RHS(0.969)LS(0.135)GS(0.462)S(0.409)PGMK ;; 191.09 1.46E-18 1900380000 2204410 1914580 1547220 1996630 2760320 1763280 2843560 1927470 2124210 3578830 TRUE FALSE FALSE 2694773.399 2138473.476 2119601.063 2105700.841 2485492.849 1855602.614 2236010.176 1454754.96 2550519.463 2686693.544 1.00300736 0.795949907 0.788925506 0.783751778 0.925112153 0.690664039 0.832253526 0.541466653 0.949315365 1 21.35740034 -6.257608784 24.93732183 0.775926186 0.847714844 0.01970847 0.136389055 1012.221415 6589614.401 0.043628252 0.04204564 5.53E-07 6.257608784 0.071788659 DGSGT(ph)PSRHS(ph)LSGS(ph)SPGMK ddPTM_HeLa_A486_30min_R1 2 DGSGTPSRHSLSGSSPGMK 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 DGS(0.448)GT(0.55)PS(0.002)RHS(0.996)LS(0.25)GS(0.618)S(0.136)PGMK;DGS(0.023)GT(0.976)PS(0.003)RHS(0.996)LS(0.016)GS(0.544)S(0.443)PGMK ; 131.94 1.14E-06 1484040000 1614450 1653720 930020 111391 1361660 1587570 1854280 1601060 1336460 1106250 TRUE FALSE FALSE 1501285.392 1522673.204 1290148.651 259323.8774 1190867.906 1391711.755 1390319.531 1236533.589 1452305.429 829237.7995 1.810440133 1.836232267 1.5558247 0.312725587 1.436099399 1.678302358 1.676623439 1.491168866 1.751373888 1 19.66142636 -6.007437769 24.90107783 1.559700024 1.355409533 0.017205804 0.441365665 1371.820617 4592768.613 0.149602724 0.162880681 9.83E-07 6.007437769 -0.204290491 DGSGT(ph)PSRHS(ph)LSGSS(ph)PGMK ddPTM_HeLa_A486_30min_R1 1 DGSGTPSRHSLSGSSPGMK 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 DGS(0.105)GT(0.893)PS(0.002)RHS(0.998)LS(0.043)GS(0.42)S(0.539)PGMK 166.57 1.50E-12 1081800000 1466000 1487000 783420 117070 1194500 1392200 1577500 1410900 1315500 1040700 TRUE FALSE FALSE 1363240.97 1369164.704 1086781.205 272544.8764 1044674.672 1220444.519 1182792.815 1089668.87 1429528.599 780101.9462 1.747516433 1.755109971 1.393127155 0.349370845 1.339151475 1.564467984 1.516202877 1.396828806 1.832489467 1 19.57330315 -4.808602818 5.247806881 1.294231093 1.754194303 0.191453542 0.375183445 0.312863325 19.07008212 0.105563319 0.23769768 1.55E-05 4.808602818 0.45996321 DGSGT(ph)PSRHSLS(ph)GS(ph)SPGMK ddPTM_HeLa_A486_30min_R1 1 DGSGTPSRHSLSGSSPGMK 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 DGS(0.003)GT(0.995)PS(0.001)RHS(0.383)LS(0.646)GS(0.552)S(0.418)PGMK 193.53 3.55E-19 347110000 486160 533520 264720 31605 432820 531650 610790 488350 446680 338300 TRUE FALSE FALSE 452082.6945 491241.9322 367226.6734 73578.03723 378531.6797 466060.4284 457963.8817 377163.3656 485398.582 253587.478 1.782748494 1.937169516 1.44812621 0.290148543 1.492706512 1.837868463 1.80594044 1.487310685 1.914126777 1 17.95212398 -6.001622434 25 1.653309233 1.346420702 0.051454129 0.473832634 183.9088741 2833912.802 0.15782474 0.176427285 9.96E-07 6.001622434 -0.30688853 DGSIS(ph)PVSSECSVVER ddPTM_HeLa_A485_30min_R1 1 DGSISPVSSECSVVER 16 0 H0YCZ0;H7BY22;H0YEM9;Q8NCP5-3;Q8NCP5-4;Q8NCP5-2;Q8NCP5 H0YCZ0 ZBTB44 Zinc finger and BTB domain-containing protein 44 1 0 DGSIS(0.972)PVS(0.024)S(0.003)ECS(0.001)VVER 85.619 0.0011656 0 70894 59890 38938 99438 91892 61920 115750 110450 54099 171440 TRUE FALSE FALSE 86664.12572 66893.61453 53342.78655 104870.0461 82742.90983 65162.03545 91019.06691 83361.96432 64956.17307 128703.1631 0.673364381 0.51975113 0.414463679 0.814821047 0.642897251 0.506297078 0.707201476 0.647707191 0.504697565 1 16.97368799 -11.09724151 2.448528114 1.684703969 0.604315918 0.52945468 0.112144305 8420386.624 2415753.265 32143888.22 0.028827926 7.99E-12 11.09724151 -1.08038805 DGSIS(ph)PVSSECSVVER ddPTM_HeLa_A486_30min_R1 2 DGSISPVSSECSVVER 16 0 H0YCZ0;H7BY22;H0YEM9;Q8NCP5-3;Q8NCP5-4;Q8NCP5-2;Q8NCP5 H0YCZ0 ZBTB44 Zinc finger and BTB domain-containing protein 44 1 0 DGSIS(1)PVSSECSVVER;DGSIS(0.989)PVS(0.01)SECSVVER ; 236.31 2.45E-41 288639000 229974 236390 147300 106898 246400 299540 439090 412200 199130 401770 TRUE FALSE FALSE 213854.0102 217657.5955 204338.5048 248863.9463 215494.2144 262585.8003 329225.0378 318351.0583 216390.7487 301164.1769 0.710091128 0.722720736 0.678495387 0.826339802 0.715537341 0.871902505 1.09317463 1.057068146 0.718514237 1 18.20019065 -6.448943874 3.980598904 0.973738997 0.733807345 0.552687165 0.10031789 0.176669007 5.33440902 0.037577395 0.031927157 3.56E-07 6.448943874 -0.239931652 DGSPEAPAS(ph)PEREEVALSEYK ddPTM_HeLa_A485_30min_R1 2 DGSPEAPASPEREEVALSEYK 21 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DGSPEAPAS(1)PEREEVALSEYK;DGSPEAPAS(1)PEREEVALSEYK ; 182.41 1.92E-19 916780000 470690 436190 378840 683160 592080 533230 732420 713720 513080 868150 TRUE FALSE FALSE 575393.3666 487198.6262 518988.6808 720479.3009 533130.4363 561149.0983 575932.4837 538679.0509 616050.4498 651736.1821 0.882862395 0.747539633 0.796317122 1.10547691 0.818015711 0.861006514 0.883689596 0.826529301 0.945245126 1 19.31392857 -14 0.128035513 1.418431197 0.817497686 0.166868023 0.091587882 291.8960325 2.367349298 31.50607143 0.757907069 1.00E-14 14 -0.600933511 DGSPEAPAS(ph)PEREEVALSEYK ddPTM_HeLa_A486_30min_R1 2 DGSPEAPASPEREEVALSEYK 21 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DGSPEAPAS(1)PEREEVALSEYK;DGSPEAPAS(1)PEREEVALSEYK ; 239.02 1.24E-46 736960000 930570 862670 530290 403830 801940 968900 1067790 1111530 690360 1242230 TRUE FALSE FALSE 865341.8485 794308.8874 735632.4897 940136.6484 701353.2074 849366.9691 800617.6481 858458.8835 750200.9607 931167.5224 0.929308452 0.85302469 0.790010897 1.009632129 0.753197669 0.912152699 0.859799798 0.921916694 0.805656278 1 19.82868121 -10.66762597 2.989988554 1.013115647 0.870700956 0.224701741 0.072151239 84287854.14 81669154.83 8428580.232 0.016518394 2.15E-11 10.66762597 -0.142414691 DGTAPPPQSPGSPGTGQDEEWS(ph)DEESPRK ddPTM_HeLa_A485_30min_R1 6 DGTAPPPQSPGSPGTGQDEEWSDEESPRK 29 1 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DGTAPPPQSPGSPGTGQDEEWS(0.985)DEES(0.015)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.999)DEES(0.001)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.999)DEES(0.001)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.998)DEES(0.002)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.986)DEES(0.014)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.946)DEES(0.054)PRK ;;;;; 252.72 2.83E-63 9954120000 796592 705728 511589 1025491 959579 892941 1358018 1317167 733536 1546498 TRUE FALSE FALSE 973791.1422 788256.7506 700847.0601 1081510.977 864039.9455 939694.01 1067866.36 994129.728 880749.9468 1160984.51 0.838763251 0.678955442 0.603666159 0.931546431 0.744230382 0.809394098 0.919793805 0.856281647 0.75862334 1 20.14691729 -14 0.05937987 1.788207964 0.45797871 0.342302835 0.093330012 455.2193091 1.971941821 52.15384073 8.83528232 1.00E-14 14 -1.330229254 DGTAPPPQSPGSPGTGQDEEWS(ph)DEESPRK ddPTM_HeLa_A486_30min_R1 5 DGTAPPPQSPGSPGTGQDEEWSDEESPRK 29 1 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DGTAPPPQSPGSPGTGQDEEWS(0.998)DEES(0.002)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.996)DEES(0.004)PRK;DGTAPPPQSPGSPGTGQDEEWS(1)DEESPRK;DGTAPPPQSPGSPGTGQDEEWS(0.99)DEES(0.01)PRK;DGTAPPPQSPGSPGTGQDEEWS(0.996)DEES(0.004)PRK ;;;; 292.97 2.49E-92 8615450000 1279148 1294105 694756 550437 1273347 1451754 1837740 1684910 1106682 2028330 TRUE FALSE FALSE 1189486.331 1191555.407 963784.1294 1281445.154 1113631.946 1272651.352 1377918.014 1301292.774 1202610.087 1520422.966 0.782339097 0.783699953 0.633892115 0.842821493 0.73244878 0.837037706 0.906272824 0.855875505 0.790970746 1 20.53604129 -6.423254983 3.925122571 0.876167868 0.755017947 0.44647997 0.069673809 0.24125569 6.641617288 0.025195064 0.021621245 3.77E-07 6.423254983 -0.121149921 DGTS(ph)PEEEIEIER ddPTM_HeLa_A485_30min_R1 1 DGTSPEEEIEIER 13 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 DGT(0.015)S(0.985)PEEEIEIER 202.25 3.90E-17 0 111220 114230 88826 144310 159730 111350 157360 141080 104840 162230 TRUE FALSE FALSE 135960.5053 127588.2048 121686.4338 152193.2899 143826.7204 117180.1138 123738.7505 106479.9088 125880.4264 121789.0466 1.1163607 1.047616418 0.999157454 1.249646779 1.180949555 0.962156426 1.016008861 0.874297909 1.033593988 1 16.89402486 -6.275888751 24.69576962 0.971779883 1.115422964 0.468454379 0.075229618 665.7793159 1137896.021 0.028070176 0.024866863 5.30E-07 6.275888751 0.143643082 DGTVLCELINALYPEGQAPVKK ddPTM_HeLa_A485_30min_R1 1 DGTVLCELINALYPEGQAPVKK 22 1 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 160.77 5.26E-17 7711600 12155 10159 7842.4 14502 13757 14549 21364 21140 11204 21163 FALSE FALSE TRUE 14858.83782 11347.00668 10743.63011 15294.20754 12387.30478 15310.76314 16799.40687 15955.38185 13452.54003 15887.45358 0.935256097 0.714211791 0.676233612 0.962659464 0.779691013 0.963701519 1.057400847 1.004275593 0.846739848 1 13.95560029 -6.30466808 6.30511125 0.980911436 0.808719842 0.411655838 0.095930749 0.216231656 23.31245902 0.034506073 0.030699998 4.96E-07 6.30466808 -0.172191594 DGTVLCELINALYPEGQAPVKK ddPTM_HeLa_A486_30min_R1 2 DGTVLCELINALYPEGQAPVKK 22 1 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ; ; 179.03 2.41E-23 10985400 13549.9 16721.2 9826.7 8117 17415.6 18126.9 22250.2 21317.6 14185.2 20893 FALSE FALSE TRUE 12600.12198 15396.15121 13631.86141 18896.78621 15231.17305 15890.58738 16682.96462 16464.04784 15414.78456 15661.25681 0.804540921 0.983072521 0.870419378 1.206594492 0.972538363 1.014643178 1.06523792 1.051259681 0.984262294 1 13.93491237 -4.130992906 1.074031723 1.035740363 0.659262503 0.424117136 0.078070675 2.097106762 1.661401952 0.023774652 0.959501353 7.40E-05 4.130992906 -0.37647786 DGVADVS(ph)IEDSVISLSGDHCIIGR ddPTM_HeLa_A486_30min_R1 1 DGVADVSIEDSVISLSGDHCIIGR 24 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 1 0 DGVADVS(0.998)IEDS(0.002)VISLSGDHCIIGR 105.84 0.00026798 28135000 19608 21997 17311 3099.3 21680 19909 22027 21137 24197 18304 TRUE FALSE FALSE 18233.58046 20253.87761 24014.2828 7215.32703 18960.69224 17452.83 16515.61162 16324.56652 26294.41544 13720.55926 1.328923997 1.476169974 1.750240814 0.525877036 1.381918323 1.272020307 1.203712714 1.189788711 1.916424465 1 13.74405167 DGVLTLANNVT(ph)PAK ddPTM_HeLa_A485_30min_R1 1 DGVLTLANNVTPAK 14 0 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DGVLTLANNVT(1)PAK 196.65 2.14E-18 165890000 200350 163050 99593 249200 194930 167710 206160 163180 124180 287600 TRUE FALSE FALSE 244917.1663 182117.2792 136436.5951 262813.165 175522.0848 176491.0363 162112.2318 123159.8491 149101.787 215906.6129 1.134366211 0.843500237 0.631924114 1.217253893 0.812953723 0.81744155 0.750844218 0.570431111 0.690584623 1 17.72004791 -6.376405648 2.074244989 0.720483567 0.92714091 0.170001865 0.182568207 0.545925979 4.624303988 0.075904408 0.064503632 4.20E-07 6.376405648 0.206657343 DGVLTLANNVT(ph)PAK ddPTM_HeLa_A486_30min_R1 1 DGVLTLANNVTPAK 14 0 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DGVLTLANNVT(1)PAK 96.489 0.0045793 140630000 149860 176620 81756 75324 115010 167600 175740 180770 131910 206470 TRUE FALSE FALSE 139355.5879 162623.988 113414.1127 175358.0787 100584.3734 146923.216 131767.9932 139612.6172 143344.065 154768.5681 0.900412723 1.050755912 0.7327981 1.133034187 0.649901815 0.949309138 0.851387299 0.902073456 0.926183312 1 17.23975298 -10.38950823 14.55099002 1.000000006 0.898730307 0.04984622 0.131539523 6.70E-10 0 0.116726851 0.02831042 4.08E-11 10.38950823 -0.101269699 DGVLTLANNVT(ph)PAKDVPPLSETEATPVPIK ddPTM_HeLa_A485_30min_R1 1 DGVLTLANNVTPAKDVPPLSETEATPVPIK 30 1 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DGVLT(0.001)LANNVT(0.999)PAKDVPPLSETEATPVPIK 117.54 6.91E-05 66033000 48743 29278 20054 65791 39818 35221 49129 40439 34229 83135 TRUE FALSE FALSE 59585.71219 32701.80742 27472.80912 69384.99574 35853.58011 37065.1171 38632.1878 30521.27184 41098.44633 62410.97449 0.954731322 0.523975273 0.440191959 1.111743508 0.574475569 0.593887812 0.618996709 0.489036938 0.658513133 1 15.92951212 -10.24676234 8.421293727 1.000000157 0.654381307 0.202283422 0.200231221 5.82E-07 5.21E-08 0.191242321 0.046383055 5.67E-11 10.24676234 -0.34561885 DGVLTLANNVT(ph)PAKDVPPLSETEATPVPIKDMEIAQTQK ddPTM_HeLa_A485_30min_R1 2 DGVLTLANNVTPAKDVPPLSETEATPVPIKDMEIAQTQK 39 2 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DGVLTLANNVT(1)PAKDVPPLSETEATPVPIKDMEIAQTQK;DGVLT(0.028)LANNVT(0.963)PAKDVPPLS(0.004)ET(0.004)EATPVPIKDMEIAQTQK ; 234.43 1.64E-51 578560000 117506 78326 50811 160558 134749 132336 212223 222799 102454 265019 TRUE FALSE FALSE 143644.8043 87485.54435 69608.10332 169328.877 121332.9164 139264.9083 166879.8223 168157.1959 123015.578 198954.6406 0.721997757 0.439726081 0.349869212 0.851092875 0.609852156 0.699983212 0.838783262 0.845203688 0.618309669 1 17.60208002 -5.867804253 0.881043612 0.813203635 0.516240058 0.351402025 0.152535426 0.693341555 1.177340812 0.081048134 0.116524216 1.36E-06 5.867804253 -0.296963577 DGVT(ph)KSPEKR ddPTM_HeLa_A485_30min_R1 1 DGVTKSPEKR 10 2 P11137-4;H7BZB9 P11137-4 MAP2 Microtubule-associated protein 2 1 0 DGVT(0.571)KS(0.429)PEKR 89.359 0.016412 678760000 465410 256820 156380 1014500 445500 358020 745940 567340 307380 1228400 TRUE FALSE FALSE 568938.8489 286852.865 214231.4695 1069919.566 401144.4558 376765.3736 586563.8252 428198.9754 369068.3465 922182.487 0.616948225 0.311058678 0.232309193 1.160203735 0.434994658 0.40855837 0.636060469 0.464332148 0.400211836 1 19.81469274 -10.3625731 3.290599047 1.003841607 0.518869094 0.259399855 0.244176658 91738221.51 123460869.2 3367671.216 0.06003156 4.34E-11 10.3625731 -0.484972513 DGVT(ph)KSPEKR ddPTM_HeLa_A486_30min_R1 1 DGVTKSPEKR 10 2 P11137-4;H7BZB9 P11137-4 MAP2 Microtubule-associated protein 2 1 0 DGVT(0.5)KS(0.5)PEKR 90.412 0.015612 529820000 508690 406510 155410 426680 362750 660490 969080 788180 356410 1072800 TRUE FALSE FALSE 473033.4579 374296.6671 215588.914 993332.6032 317250.5125 579005.4592 726605.9341 608728.6198 387303.9058 804163.8972 0.58823016 0.465448236 0.268090765 1.235236507 0.394509768 0.720009268 0.903554532 0.756970839 0.481623096 1 19.61713004 -4.57611789 0.103823289 1.126520906 9.60E-25 0.155558268 0.262041917 95.04920693 1.789592332 4.693593133 17.25356119 2.65E-05 4.57611789 -1.126520906 DGVTKS(ph)PEKR ddPTM_HeLa_A485_30min_R1 3 DGVTKSPEKR 10 2 P11137-4;H7BZB9 P11137-4 MAP2 Microtubule-associated protein 2 1 0 DGVT(0.203)KS(0.797)PEKR;DGVT(0.041)KS(0.959)PEKR;DGVT(0.165)KS(0.835)PEKR ;; 89.46 0.0023624 1796960000 1447480 771510 413024 3165750 1393840 1061930 2348980 1707390 962660 3875160 TRUE FALSE FALSE 1769466.932 861731.3833 565818.765 3338686.906 1255064.396 1117531.013 1847101.234 1288649.925 1155857.032 2909153.929 0.608241082 0.296213746 0.194495987 1.147648762 0.43141904 0.384142964 0.634927295 0.442963816 0.397317248 1 21.4721682 -10.11554127 3.784113987 1.000220368 0.504232983 0.26428302 0.248193459 146097649.9 264009876.6 403779.9542 0.063778108 7.66E-11 10.11554127 -0.495987385 DGVTKS(ph)PEKR ddPTM_HeLa_A486_30min_R1 3 DGVTKSPEKR 10 2 P11137-4;H7BZB9 P11137-4 MAP2 Microtubule-associated protein 2 1 0 DGVT(0.072)KS(0.928)PEKR;DGVT(0.044)KS(0.956)PEKR;DGVT(0.037)KS(0.963)PEKR ;; 98.902 0.0013251 2146210000 1073760 841460 332921 868500 733830 1395420 1911250 1520420 684610 2137410 TRUE FALSE FALSE 998494.9689 774779.6451 461836.9271 2021911.892 641786.1987 1223267.268 1433035.035 1174253.557 743952.546 1602188.624 0.623206877 0.4835758 0.28825378 1.261968698 0.400568441 0.763497662 0.894423424 0.732905938 0.464335182 1 20.61161257 DGVVEITGK(ac)HEER ddPTM_HeLa_A485_30min_R1 1 DGVVEITGKHEER 13 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 1 DGVVEITGK(1)HEER 95.428 0.0041643 18903000 9148.6 8128.4 9410.7 9509.2 12128 7872.1 11837 11353 8578.3 13596 FALSE TRUE FALSE 11183.67451 9078.945672 12892.10954 10028.66352 10920.49374 8284.270983 9307.928251 8568.658949 10299.88613 10206.76742 1.095711703 0.889502553 1.26309428 0.982550411 1.069926774 0.811644926 0.911936941 0.839507613 1.009123232 1 13.3172384 -6.240989669 24.6935995 0.904255167 1.057639149 0.32179566 0.105220175 794.0699427 958862.2435 0.03323456 0.033195555 5.74E-07 6.240989669 0.153383982 DGVVEITGK(ac)HEER ddPTM_HeLa_A486_30min_R1 2 DGVVEITGKHEER 13 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 1 ; DGVVEITGK(1)HEER;DGVVEITGK(1)HEER 106.14 0.0012726 32216000 15943.2 16431.7 15875.6 5165.7 20600 17634.3 19172.5 21923.6 18020.3 22796.4 FALSE TRUE FALSE 14825.66401 15129.59225 22023.05748 12026.01066 18016.15591 15458.75936 14375.33771 16932.07487 19582.31411 17088.03306 0.867605064 0.885391092 1.288800028 0.703767989 1.0543142 0.904654111 0.84125175 0.990873251 1.14596654 1 14.06069872 -7.532772748 19.77318001 1.071463569 0.939514472 0.119803395 0.148453571 37.62250586 75160.13153 0.095754147 0.036440288 2.93E-08 7.532772748 -0.131949098 DGWNQNHFITPVS(ph)TLER ddPTM_HeLa_A486_30min_R1 1 DGWNQNHFITPVSTLER 17 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 DGWNQNHFITPVS(0.538)T(0.462)LER 130.83 9.09E-06 151280000 175110 193330 169400 69020 238990 188580 202440 219340 189130 252900 TRUE FALSE FALSE 162835.6933 178009.8267 234996.2167 160682.0481 209013.6457 165314.9169 151787.3708 169401.0702 205523.9407 189572.1939 0.858964017 0.939008106 1.23961332 0.847603463 1.102554343 0.87204201 0.800683727 0.893596612 1.084146026 1 17.53238784 -6.292450236 24.94551964 0.915355345 0.999414197 0.058303204 0.128805764 1768.007702 1422201.741 0.045501918 0.040132461 5.10E-07 6.292450236 0.084058852 DGWNQNHFITPVST(ph)LER ddPTM_HeLa_A485_30min_R1 3 DGWNQNHFITPVSTLER 17 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 DGWNQNHFITPVS(0.164)T(0.836)LER;DGWNQNHFITPVS(0.057)T(0.943)LER;DGWNQNHFITPVS(0.171)T(0.829)LER ;; 222.48 4.28E-34 901490000 631090 645400 511380 580760 635230 653140 755400 772640 587750 962070 TRUE FALSE FALSE 771473.7933 720873.9158 700560.7423 612485.4482 571984.2708 687337.4005 594002.6189 583148.8285 705706.0338 722243.6546 1.068162785 0.998103495 0.969978397 0.848031609 0.791954719 0.951669698 0.822440758 0.807412879 0.977102435 1 19.4621261 -4.925349528 2.15170384 0.874305183 1.044636964 0.41519808 0.070446376 0.282094745 2.57128066 0.019492905 0.055160199 1.19E-05 4.925349528 0.170331781 DGWNQNHFITPVST(ph)LER ddPTM_HeLa_A486_30min_R1 1 DGWNQNHFITPVSTLER 17 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 DGWNQNHFITPVS(0.189)T(0.811)LER 158.78 7.34E-09 265460000 179260 202920 171600 72072 244040 207810 214650 203330 200330 258220 TRUE FALSE FALSE 166694.7997 186839.8802 238048.1156 167787.2583 213430.2276 182172.5151 160942.2997 157036.1977 217694.7657 193560.0313 0.861204654 0.965281308 1.229841275 0.866848684 1.102656505 0.941168039 0.831485191 0.811304879 1.124688626 1 17.56242155 -6.501563296 24.21593673 0.920456727 1.009164663 0.045892458 0.130145497 1306.858891 1484692.898 0.045697491 0.03986989 3.15E-07 6.501563296 0.088707936 DGWS(ph)LDR ddPTM_HeLa_A485_30min_R1 2 DGWSLDR 7 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDR;DGWS(1)LDR ; 83.948 0.0094 159144000 366040 386350 326640 397000 401710 350440 439470 355270 340300 491020 TRUE FALSE FALSE 447464.3352 431530.2717 447477.7286 418687.1047 361714.3419 368788.4965 345573.6444 268139.4755 408595.0886 368617.7506 1.213897959 1.170671437 1.213934294 1.135830014 0.981272175 1.000463206 0.937485088 0.727418783 1.108452016 1 18.49176602 -5.770511815 1.609149961 0.932295679 1.202467866 0.594594041 0.091267376 0.244316935 1.312369426 0.032654995 0.04375219 1.70E-06 5.770511815 0.270172187 DGWS(ph)LDR ddPTM_HeLa_A486_30min_R1 2 DGWSLDR 7 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDR;DGWS(1)LDR ; 95.502 0.0055732 233590000 430440 435020 268990 119771 320000 414220 417870 376710 356040 534760 TRUE FALSE FALSE 400268.3788 400547.4309 373150.1318 278832.9409 279862.6161 363117.7479 313314.5062 290941.3565 386901.8339 400852.6153 0.998542515 0.999238662 0.9308911 0.695599655 0.698168368 0.905863487 0.781620212 0.725806307 0.96519723 1 18.61271236 -5.043018558 6.362729612 0.809293155 0.991643041 0.324531665 0.101568671 0.204998314 22.52658626 0.026966076 0.048630729 9.06E-06 5.043018558 0.182349886 DGWS(ph)LDRDR ddPTM_HeLa_A485_30min_R1 1 DGWSLDRDR 9 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDRDR 115.15 0.0093202 565240000 509130 413210 496930 717960 771320 472510 630130 552640 648030 1052100 TRUE FALSE FALSE 622384.212 461531.3151 680765.086 757180.3368 694524.6725 497249.893 495497.5778 417104.1735 778083.6769 789830.8325 0.787996855 0.584341983 0.861912524 0.958661407 0.879333452 0.629565057 0.627346461 0.52809305 0.985126998 1 19.59118416 -6.253966347 24.68327306 0.716614638 0.812314136 0.007351227 0.168648965 1535.361104 5071269.351 0.05714809 0.056047836 5.57E-07 6.253966347 0.095699498 DGWS(ph)LDRDR ddPTM_HeLa_A486_30min_R1 2 DGWSLDRDR 9 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDRDR;DGWS(1)LDRDR ; 97.452 0.001573 0 662546 775688 556358 278935 810370 820510 863240 893210 709962 867220 TRUE FALSE FALSE 616104.9468 714219.6579 771794.7174 649374.7766 708725.8382 719283.8185 647248.2216 689845.5816 771502.0778 650062.4673 0.947762681 1.098693885 1.187262388 0.998942116 1.090242667 1.106484153 0.995670807 1.06119891 1.186812217 1 19.31021883 -4.256897219 24.32611574 1.081741329 0.947762601 0.262778843 0.066718765 448.6937529 2402908.634 0.016274053 0.126211831 5.53E-05 4.256897219 -0.133978728 DGWS(ph)LDRDRGDR ddPTM_HeLa_A485_30min_R1 1 DGWSLDRDRGDR 12 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDRDRGDR 75.316 0.0064123 819010000 265240 304910 350610 314090 594260 428830 558310 597250 388330 522230 TRUE FALSE FALSE 324241.7229 340566.5721 480315.2291 331247.9414 535093.3878 451282.8757 439022.5075 450773.501 466264.269 392047.6719 0.827046674 0.868686633 1.225144959 0.844917506 1.364868168 1.151091839 1.119819193 1.149792572 1.189305032 1 18.58066957 -4.71104797 7.900185018 1.134349492 0.844346193 0.432530656 0.129521622 0.214893497 28.89828365 0.031672657 0.083776961 1.95E-05 4.71104797 -0.290003299 DGWS(ph)LDRDRGDR ddPTM_HeLa_A486_30min_R1 4 DGWSLDRDRGDR 12 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDRDRGDR;DGWS(1)LDRDRGDR;DGWS(1)LDRDRGDR;DGWS(1)LDRDRGDR ;;; 92.939 0.0013148 2127080000 1036040 1033590 945300 455187 1592520 1202100 1519540 1510150 910260 1349500 TRUE FALSE FALSE 963418.9461 951684.5641 1311345.476 1059698.34 1392771.292 1053797.124 1139335.02 1166321.811 989162.0697 1011576.416 0.952393641 0.940793546 1.296338522 1.047571219 1.376832506 1.041737537 1.126296542 1.152974499 0.977842162 1 19.94817388 -7.766953576 24.92252937 0.988920995 1.121146133 0.132804253 0.130413348 280.8855284 1269449.663 0.114255925 0.032831716 1.71E-08 7.766953576 0.132225138 DGYGGSRDS(ph)YSSSR ddPTM_HeLa_A485_30min_R1 4 DGYGGSRDSYSSSR 14 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DGYGGSRDS(0.979)YS(0.019)S(0.002)SR;DGYGGS(0.001)RDS(0.975)YS(0.024)SSR;DGYGGSRDS(0.993)YS(0.006)S(0.001)SR;DGYGGSRDS(1)YSSSR ;;; 204.07 3.13E-22 4544240000 1145420 1392260 1286190 1160150 1652560 1271130 1652170 1836530 1257980 1474080 TRUE FALSE FALSE 1400214.727 1555072.696 1762005.204 1223526.057 1488025.324 1337684.401 1299170.383 1386118.138 1510445.047 1106618.984 1.265308789 1.405246718 1.592241981 1.105643473 1.344659133 1.208803048 1.173999724 1.252570358 1.364918792 1 20.07772715 -5.271671674 24.95611605 1.222158997 1.419363925 0.377508731 0.12472322 730.5346505 1781740.695 0.034122513 0.05124592 5.35E-06 5.271671674 0.197204928 DGYGGSRDS(ph)YSSSR ddPTM_HeLa_A486_30min_R1 4 DGYGGSRDSYSSSR 14 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DGYGGSRDS(1)YSSSR;DGYGGSRDS(0.999)YS(0.001)SSR;DGYGGSRDS(0.999)YS(0.001)SSR;DGYGGSRDS(1)YSSSR ;;; 191.36 4.24E-18 4681530000 1828010 1899730 1610390 612045 2042360 1707980 1936290 2080010 1563770 1867290 TRUE FALSE FALSE 1699875.939 1749188.476 2233976.136 1424871.691 1786188.165 1497266.793 1451809.762 1606437.129 1699318.843 1399708.43 1.214450026 1.249680604 1.596029636 1.017977502 1.276114458 1.069699061 1.037222989 1.147694116 1.214052017 1 20.4166949 -5.290289818 24.99929517 1.117458793 1.343016284 0.44239771 0.125333388 670.8798395 581324.9398 0.034980801 0.051894731 5.13E-06 5.290289818 0.225557491 DGYGS(ph)PHHTPPYGPR ddPTM_HeLa_A485_30min_R1 1 DGYGSPHHTPPYGPR 15 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 0 DGYGS(1)PHHTPPYGPR 69.522 0.0042374 0 127350 169880 186340 111990 203160 142540 168890 214510 144410 156780 TRUE FALSE FALSE 155678.5681 189745.9882 255274.9203 118107.7301 182932.6771 150003.174 132805.2718 161901.0862 173391.7624 117697.6313 1.322699246 1.612147892 2.168904483 1.003484342 1.554259631 1.274479123 1.128359766 1.375567922 1.473196703 1 16.84472576 -5.279748677 24.99683132 1.281696221 1.692340372 0.378202653 0.25889629 880.4538384 1202040.812 0.072279577 0.107444343 5.25E-06 5.279748677 0.410644151 DGYNYTLSK ddPTM_HeLa_A485_30min_R1 1 DGYNYTLSK 9 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 150.61 0.00024704 29048000 98772 70623 97260 171670 178180 102220 159880 133160 123540 248680 FALSE FALSE TRUE 120743.4906 78881.74551 133240.5213 181047.8974 160439.7736 107572.0811 125720.3319 100502.3012 148333.3448 186688.6526 0.646763951 0.422531013 0.713704446 0.969785227 0.859397566 0.576211139 0.673422461 0.538341778 0.794549335 1 17.51027471 -12.08347007 0.852820883 3.63433864 0.686245242 0.277307432 0.151003308 9967.502343 282.5444145 49709.47382 0.053944607 8.25E-13 12.08347007 -2.948093398 DGYRDGYR ddPTM_HeLa_A485_30min_R1 1 DGYRDGYR 8 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 84.213 0.0076487 112550000 41289 120260 110590 34266 117370 104670 107770 188490 76141 36889 FALSE FALSE TRUE 50473.5956 134323.3609 151501.843 36137.86481 105684.2307 110150.3593 84744.0591 142262.532 91421.80029 27693.25119 1.822595522 4.850400552 5.470713496 1.304933991 3.816244975 3.977516348 3.060097874 5.137083074 3.301230313 1 14.75724682 -5.218810013 24.99996996 3.324256557 4.128151572 0.06734528 1.454131883 1560.944539 915413.0253 0.387199176 0.670642279 6.04E-06 5.218810013 0.803895016 DHANYEEDENGDIT(ph)PIK ddPTM_HeLa_A485_30min_R1 1 DHANYEEDENGDITPIK 17 0 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 DHANYEEDENGDIT(1)PIK 179.03 2.07E-17 768540000 348960 218080 213130 521310 426860 269210 397580 365650 299780 618000 TRUE FALSE FALSE 426584.9481 243582.559 291975.6561 549787.8453 384360.3196 283305.4193 312633.7851 275973.7642 359943.0963 463943.9734 0.919475136 0.525025807 0.62933387 1.185030686 0.828462792 0.610645758 0.673861076 0.594842869 0.775833111 1 18.82359107 -6.231465739 24.0474484 0.702140742 0.811187528 0.036129715 0.195340025 1401.782071 1124630.378 0.066833255 0.066821456 5.87E-07 6.231465739 0.109046787 DHANYEEDENGDIT(ph)PIK ddPTM_HeLa_A486_30min_R1 3 DHANYEEDENGDITPIK 17 0 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 DHANYEEDENGDIT(1)PIK;DHANYEEDENGDIT(1)PIK;DHANYEEDENGDIT(1)PIK ;; 275.37 2.74E-59 2016200000 1644530 1855040 964370 828930 1565420 2146120 2400100 2299670 1485540 2353530 TRUE FALSE FALSE 1529256.939 1708039.874 1337799.891 1929790.932 1369070.427 1881353.535 1799569.594 1776085.342 1614307.803 1764190.769 0.866831958 0.968171869 0.758307953 1.093867492 0.776033097 1.066411619 1.020053855 1.006742226 0.91504152 1 20.75057514 -6.285390196 24.98897393 1.003221478 0.900554663 0.244283273 0.095338199 1184.700822 1236048.045 0.031599079 0.027882405 5.18E-07 6.285390196 -0.102666815 DHANYEEDENGDIT(ph)PIKAK ddPTM_HeLa_A485_30min_R1 1 DHANYEEDENGDITPIKAK 19 1 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 DHANYEEDENGDIT(1)PIKAK 171.78 1.14E-12 265820000 156730 167710 85499 165230 245230 227210 374220 457890 134510 234760 TRUE FALSE FALSE 191594.0478 187322.2256 117128.638 174256.0965 220814.0401 239106.3643 294264.8399 345591.7596 161504.9232 176238.6524 1.08712842 1.062889571 0.664602438 0.988750731 1.252926285 1.356719204 1.669695245 1.960930561 0.916398991 1 17.42717084 -5.954508066 2.24723232 1.459635992 0.933623302 0.294672928 0.303979071 0.331897582 3.39455633 0.107107294 0.12064939 1.11E-06 5.954508066 -0.526012691 DHANYEEDENGDIT(ph)PIKAK ddPTM_HeLa_A486_30min_R1 1 DHANYEEDENGDITPIKAK 19 1 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 DHANYEEDENGDIT(1)PIKAK 200.95 1.85E-25 176950000 291530 194050 104520 142330 264400 200860 361290 369640 105760 366040 TRUE FALSE FALSE 271095.2525 178672.7713 144992.9431 331351.433 231236.4866 176079.9354 270891.4207 285481.0412 114927.362 274381.2015 0.988024147 0.651184448 0.528436141 1.207631686 0.842756302 0.64173469 0.987281269 1.040454082 0.418860189 1 18.06582212 -11.31324982 2.254337053 1.924706152 0.818193176 0.053123432 0.236971406 13546166.88 1637425.71 64093384.82 0.061395636 4.86E-12 11.31324982 -1.106512976 DHAPS(ph)IPT(ph)SPFGDSLESSTELRR ddPTM_HeLa_A485_30min_R1 1 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 2 0 DHAPS(0.999)IPT(0.538)S(0.462)PFGDSLESSTELRR 96.679 0.00097878 169220000 127060 168090 143160 122940 169860 134690 199970 195670 111960 148220 TRUE FALSE FALSE 155324.0586 187746.6633 196120.8414 129655.9009 152948.142 141742.1601 157244.7759 147681.6257 134429.345 111271.4818 1.395901772 1.687284651 1.76254363 1.165221302 1.374549341 1.273840861 1.413163313 1.327219008 1.208120382 1 16.76372436 -1.000000012 0.055540149 0.339357456 3.423020373 0.510994831 0.152018036 331.3106461 1.384446902 16.66437427 84.57188563 0.099999997 1.000000012 3.083662917 DHAPS(ph)IPTS(ph)PFGDSLESSTELRR ddPTM_HeLa_A485_30min_R1 1 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 2 0 DHAPS(1)IPT(0.089)S(0.911)PFGDSLESSTELRR 108.73 0.00030177 148940000 91815 109400 82691 73747 127950 111220 122020 128250 83551 106390 TRUE FALSE FALSE 112238.93 122193.3783 113281.842 77775.61187 115210.8487 117043.3072 95949.43019 96796.48641 100318.9193 79868.93096 1.405288998 1.5299238 1.418346791 0.973790571 1.442498946 1.465442267 1.201336102 1.211941681 1.256044348 1 16.28534678 -11.89931374 0.058600847 1.94E-10 1.921122649 0.380848999 0.145208982 308.9924747 2.00591769 58.02368095 17.63007074 1.26E-12 11.89931374 1.921122648 DHAPS(ph)IPTS(ph)PFGDSLESSTELRR ddPTM_HeLa_A486_30min_R1 2 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 2 0 DHAPS(0.988)IPT(0.194)S(0.817)PFGDSLESSTELRR;DHAPS(1)IPT(0.046)S(0.954)PFGDSLESSTELRR ; 92.198 0.0021435 318150000 189718 187486 152377 75511 212109 195102 222932 238680 139196 221068 TRUE FALSE FALSE 176419.7479 172628.9265 211381.4552 175793.4241 185504.3114 171032.2989 167152.0557 184337.7743 151261.6214 165711.1339 1.064622176 1.041746095 1.275602008 1.060842564 1.11944386 1.032111089 1.008695383 1.112404279 0.912803007 1 17.33831101 -6.313656408 3.768806741 1.017915998 1.115341039 0.300982434 0.07557851 0.329359192 9.670199353 0.027377245 0.024530232 4.86E-07 6.313656408 0.097425041 DHAPSIPT(ph)SPFGDSLESSTELRR ddPTM_HeLa_A485_30min_R1 1 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 DHAPSIPT(0.598)S(0.401)PFGDSLESSTELRR 129.27 2.38E-06 473550000 160820 229360 206320 136600 237200 203980 240570 275110 187640 198140 TRUE FALSE FALSE 196593.8542 256181.6568 282646.3537 144062.1121 213583.5351 214660.0774 189170.2542 207638.8411 225297.6269 148747.3445 1.32166295 1.722260372 1.900177476 0.968502077 1.435881332 1.44311872 1.271755505 1.395916289 1.514632934 1 17.18250439 -12.8580952 0.110337054 9.37E-12 1.701596741 0.239252993 0.237112157 187.9283332 1.785763737 47.34867404 3.30018107 1.39E-13 12.8580952 1.701596741 DHAPSIPT(ph)SPFGDSLESSTELRR ddPTM_HeLa_A486_30min_R1 1 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 DHAPSIPT(0.914)S(0.086)PFGDSLESSTELRR 190.5 3.47E-21 315840000 225430 191810 149840 65220 215810 171050 203130 213840 176120 194660 TRUE FALSE FALSE 209628.5211 176610.277 207862.0609 151835.456 188741.0975 149947.5901 152304.7255 165153.3001 191386.2234 145915.869 1.436639638 1.210356888 1.424533619 1.040568494 1.293492605 1.02763045 1.043784522 1.131839198 1.311620352 1 17.15477727 -5.260761531 24.9999954 1.126814734 1.342494735 0.461665136 0.116303859 58.1342907 2144028.966 0.03135129 0.050322206 5.49E-06 5.260761531 0.215680001 DHAPSIPTS(ph)PFGDSLESSTELRR ddPTM_HeLa_A485_30min_R1 1 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 DHAPSIPT(0.148)S(0.848)PFGDS(0.001)LES(0.001)S(0.001)T(0.001)ELRR 98.7 0.00084263 86092000 21809 27843 21932 18621 30555 25556 28875 33907 23648 28014 TRUE FALSE FALSE 26660.33681 31098.99665 30045.55947 19638.21808 27512.83691 26894.07264 22705.62036 25591.25509 28393.93669 21030.62536 1.26769111 1.478748069 1.428657444 0.933791447 1.308227237 1.27880518 1.079645516 1.216856591 1.35012327 1 14.36020413 -1 0.03012525 0.172180611 2.786616241 0.228638719 0.149288054 2127.210116 4.924444588 136.040085 330.8543884 0.1 1 2.614435631 DHAPSIPTS(ph)PFGDSLESSTELRR ddPTM_HeLa_A486_30min_R1 1 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 DHAPSIPT(0.043)S(0.957)PFGDSLESSTELRR 180.09 8.89E-21 383040000 222160 243760 222540 48172 264410 199440 251520 254390 202110 248600 TRUE FALSE FALSE 206587.7312 224443.5698 308713.4478 112146.8505 231245.2323 174835.1206 188587.0357 196470.9503 219629.0575 186348.9419 1.108606945 1.204426317 1.656641807 0.60181104 1.240925921 0.938213648 1.012010231 1.054317499 1.178590312 1 17.5076471 -5.253568316 24.99980168 1.013461383 1.311345106 0.33275677 0.206819434 737.0568612 2341009.731 0.054533362 0.092327558 5.58E-06 5.253568316 0.297883723 DHAVVVGVYRPPPK ddPTM_HeLa_A485_30min_R1 2 DHAVVVGVYRPPPK 14 1 P22087 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 0 ; ; 79.466 0.011069 29392000 63219 71540 57174 75465 92872 80093 105322 119630 69067 109314 FALSE FALSE TRUE 77281.84845 79905.98068 78325.04181 79587.46186 83625.33759 84286.54563 82819.0943 90290.55493 82928.11338 82064.03158 0.941726198 0.973702841 0.954438142 0.969821496 1.019025461 1.027082682 1.009200897 1.100245177 1.010529361 1 16.32446241 -5.801241142 1.891460226 1.035319971 0.956951263 0.599760862 0.027145339 0.22029377 1.624724243 0.009358575 0.011902044 1.58E-06 5.801241142 -0.078368708 DHAVVVGVYRPPPK ddPTM_HeLa_A486_30min_R1 2 DHAVVVGVYRPPPK 14 1 P22087 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 0 ; ; 97.86 0.0021622 16398500 65029 60559 41624 22011 62677 59175 73576 68004 55873 78195 FALSE FALSE TRUE 60470.80291 55760.08429 57741.92753 51242.72037 54815.46622 51874.59015 55166.50659 52520.97372 60716.11663 58614.46304 1.031670338 0.951302484 0.98511399 0.874233384 0.935186699 0.885013484 0.941175671 0.896041199 1.035855546 1 15.83896907 -10.46624867 12.48256708 1.000000012 0.943377803 0.070386581 0.05352799 1.80E-08 7.61E-10 0.050999924 0.012369296 3.42E-11 10.46624867 -0.056622209 DHCMEITIRNS(ph)PYR ddPTM_HeLa_A485_30min_R1 4 DHCMEITIRNSPYR 14 1 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 DHCMEITIRNS(1)PYR;DHCMEITIRNS(1)PYR;DHCMEITIRNS(1)PYR;DHCMEIT(0.001)IRNS(0.999)PYR ;;; 170.47 1.82E-12 1301050000 665740 819180 743980 738080 975500 787120 990040 1021800 691418 954820 TRUE FALSE FALSE 813831.5662 914975.9751 1019209.162 778399.4415 878375.7948 828332.3861 778509.8661 771201.9479 830179.2505 716800.9462 1.1353662 1.276471495 1.421885904 1.085935287 1.225411043 1.155596111 1.086089339 1.075894154 1.158172649 1 19.45121302 -6.241791269 0.857251555 1.07431147 1.261379538 0.390813368 0.089208853 0.642436874 1.022177722 0.057319128 0.054778723 5.73E-07 6.241791269 0.187068068 DHCMEITIRNS(ph)PYR ddPTM_HeLa_A486_30min_R1 2 DHCMEITIRNSPYR 14 1 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 DHCMEIT(0.026)IRNS(0.974)PYR;DHCMEIT(0.15)IRNS(0.85)PY(0.001)R ; 104.78 8.96E-05 256670000 250780 239830 180322 85045 288840 253390 312030 286240 222595 241430 TRUE FALSE FALSE 233201.617 220824.9974 250147.5076 197989.0579 252610.9939 222129.3181 233956.7937 221069.4006 241889.7138 180974.3566 1.288589287 1.220200483 1.382226258 1.094017195 1.395838608 1.227407696 1.292762125 1.221550969 1.336596623 1 17.46542576 -11.15777028 2.354265734 0.362773225 1.270928562 0.485024979 0.084435646 2906459.155 1081929.627 9800825.155 0.019445768 6.95E-12 11.15777028 0.908155338 DHCMEITIRNS(ph)PYRR ddPTM_HeLa_A485_30min_R1 4 DHCMEITIRNSPYRR 15 2 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 DHCMEIT(0.29)IRNS(0.71)PYRR;DHCMEIT(0.057)IRNS(0.943)PYRR;DHCMEIT(0.18)IRNS(0.82)PYRR;DHCMEIT(0.144)IRNS(0.856)PYRR ;;; 176.69 3.24E-13 1740680000 1019300 964380 751490 1519640 1119180 1031830 1708800 1642480 895910 2041320 TRUE FALSE FALSE 1246039.768 1077155.852 1029497.423 1602654.085 1007750.51 1085855.023 1343700.92 1239659.205 1075710.919 1532456.492 0.813099605 0.7028949 0.671795531 1.045807234 0.657604647 0.708571518 0.876828104 0.808935987 0.701952013 1 20.54741468 -10.60019646 2.430497982 1.02370433 0.777497245 0.26360789 0.11210854 7361277.174 6106813.868 1111586.263 0.028687885 2.51E-11 10.60019646 -0.246207085 DHCMEITIRNS(ph)PYRR ddPTM_HeLa_A486_30min_R1 2 DHCMEITIRNSPYRR 15 2 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 DHCMEIT(0.182)IRNS(0.818)PY(0.001)RR;DHCMEIT(0.083)IRNS(0.917)PYRR ; 153.36 1.63E-08 760970000 257690 213540 141320 118040 226490 250350 361250 291210 170360 333540 TRUE FALSE FALSE 239627.2617 196618.3127 196042.8887 274803.0854 198081.5123 219464.3624 270861.4291 224907.8401 185126.942 250019.413 0.958434622 0.786412184 0.784110667 1.099126992 0.792264528 0.877789287 1.083361591 0.899561507 0.74045027 1 17.93168059 DHCVAHK(ac)LFNNLK ddPTM_HeLa_A485_30min_R1 2 DHCVAHKLFNNLK 13 1 P07919;A0A096LP55 P07919 UQCRH;UQCRHL "Cytochrome b-c1 complex subunit 6, mitochondrial;Cytochrome b-c1 complex subunit 6" 0 1 ; DHCVAHK(1)LFNNLK;DHCVAHK(1)LFNNLK 128.54 0.00010027 55793000 45115 47878 53727 42368 58233 57457 74721 89315 55714 80198 FALSE TRUE FALSE 55150.67611 53476.91562 73602.85307 44682.45656 52435.11805 60465.35967 58756.24794 67410.35621 66895.28876 60206.11453 0.916031146 0.88823064 1.222514584 0.742158116 0.87092679 1.00430596 0.975918283 1.119659635 1.111104566 1 15.87762239 -6.990573417 2.163665699 1.085055552 0.936687372 0.204111332 0.118768323 0.513513582 4.775251352 0.068240254 0.036695178 1.02E-07 6.990573417 -0.14836818 DHCVAHK(ac)LFNNLK ddPTM_HeLa_A486_30min_R1 2 DHCVAHKLFNNLK 13 1 P07919;A0A096LP55 P07919 UQCRH;UQCRHL "Cytochrome b-c1 complex subunit 6, mitochondrial;Cytochrome b-c1 complex subunit 6" 0 1 ; DHCVAHK(1)LFNNLK;DHCVAHK(1)LFNNLK 127.02 0.00011074 62694000 41314 49215 54799 18594.7 66180 50863 56956 60801 51392 65292 FALSE TRUE FALSE 38418.10195 45315.02416 76018.64037 43289.40132 57879.0873 44588.0402 42705.00638 46957.93958 55846.69994 48942.45822 0.784964698 0.925883697 1.55322481 0.884495853 1.18259461 0.911029846 0.872555404 0.959452003 1.141068552 1 15.57879894 -6.279411746 24.57521671 0.967770308 1.075394201 0.0429967 0.206490796 2269.041131 3102649.639 0.074109091 0.065489005 5.26E-07 6.279411746 0.107623893 DHFEEAMR ddPTM_HeLa_A485_30min_R1 3 DHFEEAMR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;; ;; 188.76 8.55E-12 422680000 645960 834260 708300 709930 1008480 824480 997040 1122240 732570 933770 FALSE FALSE TRUE 789651.5735 931819.4499 970329.6448 748711.6783 908072.1902 867648.4979 784014.2589 847008.8804 879590.0795 700998.3238 1.126467135 1.329274862 1.384211077 1.068064862 1.295398519 1.237732629 1.118425298 1.208289452 1.254767736 1 19.41905147 -13.83362925 0.210310847 2.96E-09 1.25911018 0.336281418 0.094185877 156.5767979 1.664389327 66.09155982 0.201649154 1.47E-14 13.83362925 1.259110177 DHFEEAMR ddPTM_HeLa_A486_30min_R1 3 DHFEEAMR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;; ;; 201.39 6.18E-06 830590000 671312 670870 528741 247038 805020 693736 757550 779354 617882 820070 FALSE FALSE TRUE 624256.4955 617707.8179 733483.6754 575116.9486 704046.8851 608149.9057 568002.9775 601912.1074 671440.5093 614719.1342 1.01551499 1.004861869 1.193201309 0.935576781 1.145314739 0.989313447 0.924004063 0.979166051 1.092272018 1 19.22956787 DHFGLEGDEESTMLEDS(ph)VSPKK ddPTM_HeLa_A486_30min_R1 1 DHFGLEGDEESTMLEDSVSPKK 22 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEESTMLEDS(0.619)VS(0.381)PKK 170.65 3.91E-14 642060000 46759 43869 22852 42662 49615 62685 82368 79272 34530 90802 TRUE FALSE FALSE 43481.43556 40392.66067 31700.9064 99319.29202 43391.82406 54951.56203 61758.6552 61223.4961 37523.0882 68064.58818 0.638826102 0.593446045 0.465747421 1.459191845 0.637509536 0.80734437 0.907353689 0.899491171 0.551286494 1 16.05461679 DHFGLEGDEESTMLEDSVS(ph)PK ddPTM_HeLa_A485_30min_R1 3 DHFGLEGDEESTMLEDSVSPK 21 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEESTMLEDSVS(1)PK;DHFGLEGDEESTMLEDSVS(1)PK;DHFGLEGDEESTMLEDSVS(1)PK ;; 222.21 7.43E-36 716150000 311410 220879 169523 599790 354150 242873 439310 335850 230122 769700 TRUE FALSE FALSE 380682.0801 246708.8777 232236.6121 632555.009 318889.5825 255589.4547 345447.8297 253482.2609 276305.3746 577827.9553 0.658815616 0.426959055 0.401913078 1.094711675 0.551876349 0.44232795 0.597838555 0.4386812 0.478179313 1 19.14028048 -9.943398546 4.39929624 1.000009282 0.565535772 0.311709254 0.193607234 82305483.43 187783057.4 12542.82207 0.049688745 1.14E-10 9.943398546 -0.434473511 DHFGLEGDEESTMLEDSVS(ph)PK ddPTM_HeLa_A486_30min_R1 2 DHFGLEGDEESTMLEDSVSPK 21 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEESTMLEDSVS(1)PK;DHFGLEGDEESTMLEDSVS(1)PK ; 229.69 2.70E-36 780310000 252760 243920 117045 242750 216922 348780 441660 371420 217163 510350 TRUE FALSE FALSE 235042.8293 224590.8909 162367.9586 565134.2679 189713.62 305751.0697 331151.9966 286855.774 235986.8637 382555.0382 0.61440265 0.587081252 0.424430323 1.477262646 0.495911963 0.7992342 0.865632297 0.749841841 0.616870359 1 18.5453078 DHFGLEGDEESTMLEDSVS(ph)PKK ddPTM_HeLa_A485_30min_R1 3 DHFGLEGDEESTMLEDSVSPKK 22 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEESTMLEDS(0.002)VS(0.998)PKK;DHFGLEGDEESTMLEDS(0.009)VS(0.991)PKK;DHFGLEGDEESTMLEDS(0.051)VS(0.949)PKK ;; 250.82 1.17E-47 895030000 525140 291406 208612 1180270 597860 406490 780890 632060 380813 1609110 TRUE FALSE FALSE 641955.5813 325483.3968 285786.2599 1244745.161 538334.9592 427773.1878 614046.4722 477046.294 457238.6761 1207988.49 0.531425246 0.269442465 0.236580284 1.030427998 0.445645769 0.354120251 0.508321459 0.394909635 0.378512444 1 20.20417528 -10.19304296 4.997811293 1.000049917 0.461400133 0.371996987 0.210080479 586301637 26.89194777 336793.7756 0.051970023 6.41E-11 10.19304296 -0.538649784 DHFGLEGDEESTMLEDSVS(ph)PKK ddPTM_HeLa_A486_30min_R1 3 DHFGLEGDEESTMLEDSVSPKK 22 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEESTMLEDS(0.005)VS(0.995)PKK;DHFGLEGDEESTMLEDS(0.001)VS(0.999)PKK;DHFGLEGDEESTMLEDSVS(1)PKK ;; 333.01 1.00E-114 630507000 499497 517764 206280 556849 488263 821169 1101670 962519 436094 1186090 TRUE FALSE FALSE 464484.8397 476734.495 286157.1404 1296372.614 427020.5017 719861.5178 826020.5137 743374.4353 473894.979 889085.3438 0.522429981 0.536207799 0.321855649 1.458096934 0.480291914 0.809665262 0.929067743 0.836111449 0.533014049 1 19.76196239 DHGSWS(ph)LSPPPER ddPTM_HeLa_A486_30min_R1 1 DHGSWSLSPPPER 13 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 DHGS(0.002)WS(0.991)LS(0.007)PPPER 130.47 1.52E-05 45413000 82831 86898 84904 17210 90949 65808 67011 75874 72607 55038 TRUE FALSE FALSE 77024.97464 80011.886 117781.1026 40065.74975 79541.32835 57689.27805 50244.13903 58599.14652 78900.63322 41256.12656 1.866994821 1.939394041 2.854875443 0.971146666 1.927988277 1.39832027 1.217858854 1.420374412 1.91245858 1 15.33232076 -5.270671372 24.99290573 1.437874305 2.192318717 0.473707063 0.391672895 582.2823843 1576357.787 0.107493779 0.161968885 5.36E-06 5.270671372 0.754444412 DHMVS(ph)PTAVAFLER ddPTM_HeLa_A486_30min_R1 2 DHMVSPTAVAFLER 14 0 K7EJ05;K7EPP9;K7ELY2;X6R2W0;K7EIY4;Q5U8S2;O60499 K7EJ05 STX10 Syntaxin-10 1 0 DHMVS(1)PTAVAFLER;DHMVS(0.999)PT(0.001)AVAFLER ; 154.74 2.24E-08 111999000 89369 88398 78831 31919 101743 90538 93809 92745 92795 101722 TRUE FALSE FALSE 83104.6946 81393.02054 109356.4744 74309.0451 88981.44422 79368.34208 70336.99599 71628.98811 100838.5453 76250.1491 1.089895503 1.067447362 1.434180466 0.974542948 1.166967478 1.040894254 0.922450603 0.939394728 1.322470139 1 16.21845254 DHNS(ph)EDEDEDKYADDIDMPGQNFDSK ddPTM_HeLa_A485_30min_R1 3 DHNSEDEDEDKYADDIDMPGQNFDSK 26 1 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 0 DHNS(0.835)EDEDEDKY(0.165)ADDIDMPGQNFDSK;DHNS(1)EDEDEDKYADDIDMPGQNFDSK;DHNS(0.954)EDEDEDKY(0.046)ADDIDMPGQNFDSK ;; 153.39 1.62E-09 652090000 164648.4 92830.7 53715.1 305501 100041.1 110038.6 186246 150330.6 78686.4 357532.6 TRUE FALSE FALSE 201273.8685 103686.4428 73586.55076 322189.7461 90080.65682 115800.0509 146453.0206 113461.7846 94478.03873 268406.3027 0.749885031 0.386304054 0.274161039 1.200380702 0.335613046 0.431435662 0.545639276 0.422723995 0.351996349 1 18.03405902 -10.30755479 3.12669445 1.003200646 0.520313978 0.233672017 0.259663889 56267653.73 76029529.36 1726050.468 0.065040576 4.93E-11 10.30755479 -0.482886668 DHNS(ph)EDEDEDKYADDIDMPGQNFDSK ddPTM_HeLa_A486_30min_R1 1 DHNSEDEDEDKYADDIDMPGQNFDSK 26 1 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 0 DHNS(1)EDEDEDKYADDIDMPGQNFDSK 196.01 1.52E-21 352090000 240090 211830 46468 124020 110140 299630 338120 237390 158210 605440 TRUE FALSE FALSE 223260.9308 195043.8193 64461.65406 288724.8276 96325.21419 262664.697 253518.7997 183341.4792 171923.7702 453833.8832 0.491944165 0.429769188 0.142037993 0.63619055 0.212247736 0.57876837 0.558615848 0.403983673 0.378825329 1 18.7918048 -14 0.372246204 8.677354636 0.410963819 0.573040084 0.14831614 391.0765937 3.010348586 2416.60964 0.101163608 1.00E-14 14 -8.266390817 DHNVGSPPKS(ph)PTHASPQHTQTEK ddPTM_HeLa_A486_30min_R1 1 DHNVGSPPKSPTHASPQHTQTEK 23 1 F8W665;A0A0C4DGH6;A0JNW5-2;A0JNW5 F8W665 UHRF1BP1L UHRF1-binding protein 1-like 1 0 DHNVGSPPKS(0.99)PT(0.01)HASPQHTQTEK 124.09 2.43E-06 60163000 52145 54497 24657 2237.1 34896 32576 32217 29447 46687 11362 TRUE FALSE FALSE 48489.90478 50178.45925 34204.85074 5208.081857 30519.01829 28557.10433 24155.96584 22742.56092 50733.86675 8516.881246 5.693387448 5.891647165 4.016123948 0.611501054 3.583356091 3.353000177 2.836245469 2.670292125 5.95685971 1 13.05610952 -4.902962527 4.315862376 2.935609484 5.765220003 0.412891983 1.382337317 0.201887762 6.725346743 0.359315704 0.800406177 1.25E-05 4.902962527 2.829610519 DHRPPCAQEAPR ddPTM_HeLa_A485_30min_R1 5 DHRPPCAQEAPR 12 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 0 ;;;; ;;;; 166.7 7.15E-10 197191300 112470.2 135833.1 129203.9 108069.6 159998 125273 151945.6 164751.2 120247.6 133659.9 FALSE FALSE TRUE 137488.808 151717.5995 177001.7992 113973.1686 144068.0373 131832.1006 119481.1813 124345.7099 144380.1903 100340.9468 1.370216371 1.512020809 1.764003679 1.135859012 1.435785111 1.313841506 1.190751983 1.239231978 1.438896034 1 16.61455093 -9.176381545 0.053049746 8.62E-11 2.310504017 0.385798035 0.160541204 128.3826007 1.90754303 50.15804891 32.89238295 6.66E-10 9.176381545 2.310504017 DHRPPCAQEAPR ddPTM_HeLa_A486_30min_R1 4 DHRPPCAQEAPR 12 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 0 ;;; ;;; 131.06 9.33E-05 142249900 67116.5 61798 52823.6 22730.9 78998 59193.6 64411 60142 51241.6 67462 FALSE FALSE TRUE 62411.97994 56900.90142 73278.31259 52918.68396 69089.33421 51890.89547 48294.68653 46448.97949 55683.26315 50569.0761 1.234192609 1.12521141 1.449073589 1.046463334 1.36623683 1.026138887 0.955024103 0.918525373 1.101132697 1 15.6259678 -6.394218309 6.166556038 0.987604479 1.23733488 0.535041486 0.113839703 0.181628921 8.349962325 0.038178235 0.033505996 4.03E-07 6.394218309 0.249730401 DHS(ph)PTPS(ph)VFNSDEER ddPTM_HeLa_A486_30min_R1 1 DHSPTPSVFNSDEER 15 0 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.999)PT(0.001)PS(0.69)VFNS(0.309)DEER 199.37 6.14E-25 442470000 372490 394250 210760 140710 331480 324420 366110 348060 329850 501400 TRUE FALSE FALSE 346380.3745 363008.1942 292371.9163 327579.9911 289902.6875 284396.3589 274505.4057 268814.3361 358441.6636 375846.1764 0.921601432 0.965842456 0.777903128 0.871579948 0.771333342 0.756682858 0.730366365 0.715224347 0.953692457 1 18.5197828 -4.759859542 24.99854997 0.806269073 0.943721981 0.206895728 0.091128357 51.09747582 808469.1797 0.022674342 0.053854368 1.74E-05 4.759859542 0.137452908 DHS(ph)PTPSVFNS(ph)DEER ddPTM_HeLa_A485_30min_R1 2 DHSPTPSVFNSDEER 15 0 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.962)PT(0.038)PSVFNS(1)DEER;DHS(0.983)PT(0.017)PSVFNS(1)DEER ; 184.7 7.05E-18 1809260000 711760 889160 692780 956860 730710 633720 882770 726420 685150 1166800 TRUE FALSE FALSE 870088.5565 993139.5273 949068.151 1009130.839 657957.9467 666900.5993 694158.9779 548264.356 822653.3204 875938.2334 0.993321816 1.133800866 1.083487528 1.152057075 0.75114651 0.761355737 0.792474802 0.625916686 0.939168185 1 19.74046962 -5.763784646 24.99999931 0.78949662 1.093235041 0.623662896 0.105321651 35.50484154 378474.1666 0.030355781 0.036080302 1.72E-06 5.763784646 0.303738421 DHS(ph)PTPSVFNS(ph)DEER ddPTM_HeLa_A486_30min_R1 3 DHSPTPSVFNSDEER 15 0 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.989)PT(0.011)PSVFNS(1)DEER;DHS(0.823)PT(0.177)PSVFNS(1)DEER;DHS(0.737)PT(0.286)PS(0.028)VFNS(0.949)DEER ;; 200.74 2.55E-25 1739517000 1013030 961620 537820 325280 741390 843760 934570 858320 810300 1230710 TRUE FALSE FALSE 942021.8283 885417.729 746078.3073 757268.2787 648397.953 739665.4699 700730.7011 662899.273 880537.4564 922532.2054 1.021126225 0.95976891 0.808728739 0.820858366 0.702845873 0.801777397 0.759573159 0.718564912 0.954478826 1 19.81523975 -4.677265137 3.01375477 0.802304056 1.013267473 0.355080727 0.090325051 0.234786709 4.123290998 0.022763707 0.075748706 2.10E-05 4.677265137 0.210963417 DHS(ph)PTPSVFNS(ph)DEERYR ddPTM_HeLa_A485_30min_R1 2 DHSPTPSVFNSDEERYR 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.975)PT(0.025)PSVFNS(1)DEERYR;DHS(0.994)PT(0.006)PS(0.002)VFNS(0.998)DEERYR ; 150.28 5.35E-08 3648600000 1159610 1487790 1678590 2153820 2703600 1494120 2554200 2401800 1782590 3150500 TRUE FALSE FALSE 1417561.244 1661774.098 2299570.293 2271477.733 2434420.091 1572349.813 2008474.304 1812754.784 2140339.462 2365138.331 0.59935659 0.702611799 0.972277293 0.960399526 1.0292929 0.664802474 0.849199507 0.766447679 0.904953184 1 21.17349313 -4.591612146 4.977000947 0.881977364 0.62146793 0.462904451 0.106297224 0.171101867 7.86137411 0.0287052 0.082890898 2.56E-05 4.591612146 -0.260509434 DHS(ph)PTPSVFNS(ph)DEERYR ddPTM_HeLa_A486_30min_R1 1 DHSPTPSVFNSDEERYR 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.997)PT(0.003)PS(0.143)VFNS(0.857)DEERYR 81.477 0.0078555 662770000 155120 172440 138710 98862 218890 163920 214770 232180 157880 220180 TRUE FALSE FALSE 144246.889 158775.2264 192422.2268 230155.7322 191434.7751 143697.217 161032.2744 179317.6825 171565.1655 165045.4949 0.87398259 0.962008848 1.165873852 1.394498725 1.159890946 0.870652162 0.975684156 1.086474263 1.039502264 1 17.33250423 -6.228593407 24.58759233 0.998693488 1.121730359 0.149073757 0.138200557 1160.789892 868935.3033 0.051411342 0.05140755 5.91E-07 6.228593407 0.123036871 DHS(ph)PTPSVFNSDEER ddPTM_HeLa_A485_30min_R1 6 DHSPTPSVFNSDEER 15 0 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 DHS(0.905)PT(0.095)PSVFNSDEER;DHS(0.921)PT(0.079)PSVFNSDEER;DHS(0.842)PT(0.158)PSVFNSDEER;DHS(0.946)PT(0.054)PSVFNSDEER;DHS(0.5)PT(0.5)PSVFNSDEER;DHS(0.945)PT(0.055)PSVFNSDEER ;;;;; 289.2 6.00E-60 8156960000 1542339 1826084 1541686 2481764 2296546 1476009 2525858 1831629 1609494 3241840 TRUE FALSE FALSE 1885426.99 2039628.639 2112019.806 2617336.483 2067893.817 1553290.549 1986187.804 1382419.116 1932504.683 2433708.95 0.774713422 0.838074183 0.867819386 1.075451723 0.849688216 0.638240061 0.816115585 0.568029762 0.794057434 1 21.21472521 -6.016069087 24.66082795 0.74007788 0.893700591 0.165615502 0.129298911 868.8781384 1333445.838 0.041021829 0.042194309 9.64E-07 6.016069087 0.153622711 DHS(ph)PTPSVFNSDEER ddPTM_HeLa_A486_30min_R1 6 DHSPTPSVFNSDEER 15 0 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 DHS(0.999)PT(0.001)PSVFNSDEER;DHS(0.998)PT(0.002)PSVFNSDEER;DHS(0.951)PT(0.049)PSVFNSDEER;DHS(0.883)PT(0.117)PSVFNSDEER;DHS(0.956)PT(0.044)PSVFNSDEER;DHS(0.941)PT(0.059)PSVFNSDEER ;;;;; 269.99 1.43E-51 8693530000 2261460 2483190 1599870 900115 2284100 2555440 2824660 2637700 2200170 3093070 TRUE FALSE FALSE 2102943.332 2286412.981 2219382.51 2095513.209 1997606.88 2240175.795 2117900.192 2037153.291 2390882.507 2318545.139 0.907009873 0.986141241 0.957230667 0.903805224 0.861577739 0.966198913 0.91346084 0.878634302 1.031199465 1 21.14478838 -7.772979363 24.99885174 1.015599795 0.923686366 0.501345853 0.037396469 214.7622399 465220.1645 0.036368284 0.009715958 1.69E-08 7.772979363 -0.091913428 DHS(ph)PTPSVFNSDEERYR ddPTM_HeLa_A485_30min_R1 3 DHSPTPSVFNSDEERYR 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 DHS(0.899)PT(0.051)PS(0.051)VFNSDEERYR;DHS(1)PTPSVFNSDEERYR;DHS(0.797)PT(0.102)PS(0.102)VFNSDEERYR ;; 172.57 1.69E-12 3305210000 114454 156724 168411 163419 359936 203232 340750 391384 173538 277114 TRUE FALSE FALSE 139913.8974 175051.5085 230713.2371 172346.1662 324099.508 213872.9133 267945.9788 295396.4603 208365.4848 208034.5797 0.672551158 0.8414539 1.109013883 0.828449609 1.557911711 1.028064246 1.287987695 1.419939227 1.001590626 1 17.66646383 -4.595160644 0.893745041 1.215749995 0.528128073 0.399607256 0.203421321 1.317702349 1.172653688 0.072027459 0.803327391 2.54E-05 4.595160644 -0.687621922 DHS(ph)PTPSVFNSDEERYR ddPTM_HeLa_A486_30min_R1 4 DHSPTPSVFNSDEERYR 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 DHS(1)PTPSVFNSDEERYR;DHS(0.972)PT(0.027)PS(0.001)VFNSDEERYR;DHS(0.996)PT(0.004)PSVFNSDEERYR;DHS(0.895)PT(0.105)PSVFNSDEERYR ;;; 213.5 3.83E-26 3029280000 409923 404730 404633 282816 811422 486668 701665 789834 342235 646980 TRUE FALSE FALSE 381189.5145 372657.7208 561317.734 658409.9407 709645.8866 426627.8502 526100.9955 610006.0402 371900.2054 484971.9969 0.786003145 0.768410801 1.15742298 1.357624657 1.463271882 0.879695844 1.084806956 1.257817037 0.766848824 1 18.88754192 -4.760701279 24.94610372 1.140917199 0.777206839 0.319331602 0.199031958 20.40915753 689651.8874 0.05286712 0.124100937 1.73E-05 4.760701279 -0.36371036 DHS(ph)SSRPSSPRPQK ddPTM_HeLa_A486_30min_R1 1 DHSSSRPSSPRPQK 14 2 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 DHS(0.209)S(0.209)S(0.209)RPS(0.186)S(0.186)PRPQK 43.798 0.032254 10765000 22075 23559 23724 2707 32022 16673 14975 15218 23535 5864 TRUE FALSE FALSE 20527.6565 21692.09904 32910.56815 6302.032804 28005.50217 14616.05478 11228.09661 11753.19361 25575.03275 4395.616232 4.670029278 4.934939243 7.487134093 1.433708602 6.371234587 3.325143508 2.554385101 2.673844346 5.818304283 1 12.10184972 -7.670843237 0.153801268 4.75E-12 6.721999782 0.257519736 1.772088424 6.940217578 1.021715461 20.26128141 17.51247033 2.13E-08 7.670843237 6.721999782 DHSSSIGCLSSDAIISS(ph)PENTHAANSIVSQTIPK ddPTM_HeLa_A485_30min_R1 1 DHSSSIGCLSSDAIISSPENTHAANSIVSQTIPK 34 0 F5H4N8;F5GWB1;A0A0A0MTP0;A0A0A0MTK0;Q7Z6B0-3;Q7Z6B0-2;Q7Z6B0 F5H4N8 CCDC91 Coiled-coil domain-containing protein 91 1 0 DHS(0.003)S(0.003)S(0.003)IGCLS(0.003)S(0.003)DAIIS(0.065)S(0.326)PENT(0.269)HAANS(0.269)IVS(0.047)QT(0.009)IPK 42.262 0.037581 104420000 31546 53227 42876 31291 64254 34598 57756 51070 42525 46045 TRUE FALSE FALSE 38563.29887 59451.43464 58737.61662 33000.3481 57856.64615 36409.49778 45415.95878 38545.00243 51059.37744 34566.8289 1.115615754 1.719898427 1.699248051 0.954682543 1.673762043 1.053307432 1.313859565 1.115086447 1.477120669 1 15.07710064 -5.245117801 24.98995094 1.246644632 1.532418494 0.197010885 0.26029484 1290.284524 1975550.395 0.066793455 0.115255088 5.69E-06 5.245117801 0.285773862 DHSSSRPS(ph)SPRPQK ddPTM_HeLa_A485_30min_R1 2 DHSSSRPSSPRPQK 14 2 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 DHS(0.034)S(0.034)S(0.034)RPS(0.45)S(0.45)PRPQK;DHS(0.059)S(0.059)S(0.059)RPS(0.411)S(0.411)PRPQK ; 68.257 0.0051136 115459000 166944 335740 317160 62310 441040 223900 251030 266480 266920 140249 TRUE FALSE FALSE 204080.1169 375001.8725 434490.6821 65713.83752 397128.509 235623.0578 197395.3898 201125.3622 320488.3957 105287.5054 1.938312776 3.561693964 4.126706968 0.624137093 3.771848403 2.23790142 1.874822554 1.910249098 3.043935693 1 16.68397471 -9.513213489 0.176197358 1.29E-13 3.22719673 0.179116902 1.012791804 28.66693892 1.37279057 21.28546581 4.684240462 3.07E-10 9.513213489 3.22719673 DHSSSRPS(ph)SPRPQK ddPTM_HeLa_A486_30min_R1 2 DHSSSRPSSPRPQK 14 2 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 DHS(0.045)S(0.045)S(0.051)RPS(0.429)S(0.429)PRPQK;DHS(0.069)S(0.078)S(0.078)RPS(0.388)S(0.388)PRPQK ; 59.862 0.013427 85176000 191192 237800 199936 7056.1 273420 133324 144646 145260 205902 42724 TRUE FALSE FALSE 177790.4281 218955.8619 277356.5737 16426.9574 239125.1141 116875.8404 108454.0409 112187.469 223749.7511 32025.63231 5.55150407 6.836894267 8.660455817 0.512931555 7.466678931 3.64944677 3.386476177 3.503052427 6.986583402 1 14.96693943 -5.236223845 24.99533776 4.021714451 6.998345492 0.310456537 2.186177167 985.3503058 976744.5347 0.564125173 0.976611154 5.80E-06 5.236223845 2.976631042 DHTVS(ph)GDEDYCPR ddPTM_HeLa_A485_30min_R1 1 DHTVSGDEDYCPR 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 DHT(0.007)VS(0.993)GDEDYCPR 217.2 7.61E-23 0 56009 71028 76186 72051 125650 79491 85789 113430 82802 99140 TRUE FALSE FALSE 68468.00882 79334.10674 104370.3718 75986.96369 113139.8448 83653.02584 67459.47932 85611.11465 99419.6019 74426.22254 0.919944698 1.065942944 1.40233332 1.020970313 1.520161053 1.123972479 0.90639397 1.150281604 1.335814159 1 16.18352339 -9.608763331 13.8731538 1.000003501 1.162573509 0.058852694 0.192585747 0 0 0.187181494 0.045398181 2.46E-10 9.608763331 0.162570008 DHTVS(ph)GDEDYCPR ddPTM_HeLa_A486_30min_R1 1 DHTVSGDEDYCPR 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 DHT(0.029)VS(0.971)GDEDYCPR 79.036 0.0042904 307900000 82403 85454 87572 40364 107500 91322 89765 84903 81522 99831 TRUE FALSE FALSE 76626.97523 78682.31382 121482.2237 93969.43188 94016.3476 80055.62013 67304.84756 65572.44032 88588.3926 74832.66781 1.023977595 1.051443389 1.62338491 1.255727407 1.256354348 1.069795084 0.899404625 0.876254211 1.183819783 1 16.19138059 -6.387274515 3.430330187 0.979735344 1.25411791 0.329237432 0.170469821 0.301373687 6.548118632 0.067518687 0.058364068 4.10E-07 6.387274515 0.274382566 DHYEATAMHR ddPTM_HeLa_A485_30min_R1 2 DHYEATAMHR 10 0 B1AJY5;B1AJY7;O75832;B1AJY6;O75832-2 B1AJY5 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 0 ; ; 171.85 4.35E-07 331060000 209682 272084 240157 226863 319060 274240 336620 332060 245581 307170 FALSE FALSE TRUE 256325.0375 303901.857 329001.0681 239255.9512 287293.2661 288598.7823 264698.3871 250621.7644 294866.8541 230598.172 1.111565782 1.317884935 1.426728864 1.037544873 1.245860987 1.25152242 1.147877213 1.086833266 1.278704213 1 17.81502155 -14 0.136938556 0.25986698 1.293914388 0.247135645 0.111481933 193.8319754 1.639058372 39.01217196 0.733931055 1.00E-14 14 1.034047407 DHYEATAMHR ddPTM_HeLa_A486_30min_R1 2 DHYEATAMHR 10 0 B1AJY5;B1AJY7;O75832;B1AJY6;O75832-2 B1AJY5 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 0 ; ; 164.97 8.86E-07 131615000 86727.9 87534 78099 27778.8 110257 87505 96985 106251 84837 92454 FALSE FALSE TRUE 80648.72207 80597.48705 108341.0244 64670.45026 96427.53895 76709.52279 72718.3272 82059.96674 92190.73947 69302.91663 1.163713246 1.162973955 1.563296751 0.933156257 1.391392219 1.106872936 1.04928235 1.18407667 1.330257714 1 16.08062845 DHYQDPVPGIT(ph)PSSSSR ddPTM_HeLa_A485_30min_R1 2 DHYQDPVPGITPSSSSR 17 0 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 DHYQDPVPGIT(0.818)PS(0.117)S(0.037)S(0.014)S(0.014)R;DHYQDPVPGIT(0.522)PS(0.103)S(0.103)S(0.136)S(0.136)R ; 92.551 0.001011 986000000 529460 530980 577450 510550 744600 539800 691670 594240 520470 696950 TRUE FALSE FALSE 647236.5504 593073.4921 791072.7847 538440.0537 670465.0096 568063.0933 543889.0541 448501.7083 624923.555 523213.1914 1.237041728 1.133521673 1.511951147 1.029102596 1.281437511 1.085720128 1.03951709 0.857206423 1.194395641 1 18.99703939 -6.455351841 2.436110605 1.00990922 1.238387185 0.353897779 0.138196729 0.323431894 3.795956329 0.054726652 0.044656829 3.50E-07 6.455351841 0.228477964 DHYQDPVPGIT(ph)PSSSSR ddPTM_HeLa_A486_30min_R1 1 DHYQDPVPGITPSSSSR 17 0 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 DHYQDPVPGIT(0.393)PS(0.106)S(0.106)S(0.158)S(0.238)R 103.92 0.00031419 394250000 372700 432710 308040 118040 486580 373650 416530 421130 350160 405550 TRUE FALSE FALSE 346575.6546 398420.4837 427321.3376 274803.0854 425548.5992 327552.862 312309.7884 325247.8922 380512.1507 303997.6403 1.140060345 1.310603869 1.405673206 0.903964534 1.399841784 1.077484883 1.027342805 1.069902687 1.251694422 1 18.2137006 -5.900552005 0.862204523 1.089079722 1.259326712 0.141389239 0.153109004 1.226182411 2.002177645 0.083112237 0.115851229 1.26E-06 5.900552005 0.17024699 DHYQDPVPGITPS(ph)SSSR ddPTM_HeLa_A486_30min_R1 1 DHYQDPVPGITPSSSSR 17 0 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 DHYQDPVPGIT(0.261)PS(0.393)S(0.086)S(0.13)S(0.13)R 84.653 0.0012079 568200000 341690 372590 303540 96440 405870 352990 376810 390270 283200 314980 TRUE FALSE FALSE 317739.2955 343064.6115 421078.8171 224517.1938 354962 309441.6827 282528.1525 301414.0405 307748.004 236106.9578 1.345743041 1.45300509 1.783424008 0.950913077 1.503394916 1.310599593 1.196610871 1.276599569 1.303426239 1 17.84908103 -11.64442414 0.064481573 7.85E-14 1.935225005 0.278932947 0.194058466 274.4009273 2.083799071 56.01495573 16.3269958 2.27E-12 11.64442414 1.935225005 DIAAHIK ddPTM_HeLa_A485_30min_R1 1 DIAAHIK 7 0 F8VXL2;F8VRV5;P63167 F8VXL2 DYNLL1 "Dynein light chain 1, cytoplasmic" 0 0 78.496 0.024915 20510000 37160 35995 31627 47623 54252 39893 51731 48544 43398 69770 FALSE FALSE TRUE 45426.1138 40204.30214 43327.14341 50224.5239 48850.48039 41981.73579 40678.24925 36638.50789 52107.58053 52377.62302 0.867280934 0.767585465 0.827207134 0.958892768 0.93265936 0.801520447 0.776634122 0.699506884 0.994844316 1 15.67666297 -7.847679608 11.76720968 0.998768128 0.831974171 0.460199652 0.072944068 0.579179236 75.68367105 0.07708124 0.019907755 1.42E-08 7.847679608 -0.166793958 DIAAHIKK ddPTM_HeLa_A485_30min_R1 2 DIAAHIKK 8 1 F8VXL2;F8VRV5;P63167 F8VXL2 DYNLL1 "Dynein light chain 1, cytoplasmic" 0 0 ; ; 103.56 0.0027703 36473000 46659 65457 52043 38726 70839 78975 88705 111914 49143 54761 FALSE FALSE TRUE 57038.13358 73111.62675 71295.87139 40841.50332 63786.02043 83110.00888 69752.4521 84466.91603 59005.54933 41110.0905 1.387448504 1.778435072 1.734266953 0.993466636 1.551590367 2.021644999 1.696723389 2.054651668 1.435305751 1 15.32720493 -6.015838721 24.80192171 1.719421558 1.483663185 0.02631105 0.346664859 1627.760059 2548917.108 0.110120689 0.113394488 9.64E-07 6.015838721 -0.235758373 DIAAHIKK ddPTM_HeLa_A486_30min_R1 1 DIAAHIKK 8 1 F8VXL2;F8VRV5;P63167 F8VXL2 DYNLL1 "Dynein light chain 1, cytoplasmic" 0 0 70.919 0.023313 8783800 4512.2 5789.4 11054 1114.1 9967.3 2940.4 4107.8 4470.4 2980.1 5233.2 FALSE FALSE TRUE 4195.918081 5330.626859 15334.40484 2593.681103 8717.108293 2577.643344 3079.984992 3452.587508 3238.417467 3922.772658 1.069630704 1.358892631 3.90907304 0.661185679 2.222180344 0.657097306 0.785155109 0.880139587 0.82554299 1 11.93765801 -6.268006767 24.75733947 0.819318689 1.866224365 0.277050543 0.819015719 629.1732628 2371811.46 0.283958666 0.25628739 5.40E-07 6.268006767 1.046905676 DICNDVLSLLEK ddPTM_HeLa_A485_30min_R1 1 DICNDVLSLLEK 12 0 E7EX29;P63104;E7ESK7;B0AZS6 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 118.48 0.0078807 11327000 17652 16678 15708 25236 27835 19955 31392 26790 20360 32728 FALSE FALSE TRUE 21578.6265 18628.34702 21519.04286 26614.57878 25063.64967 20999.81294 24684.84275 20219.71049 24446.06525 24569.51191 0.878268424 0.758189543 0.875843319 1.083235958 1.020111826 0.85471022 1.004694063 0.822959388 0.994975616 1 14.58458158 -5.007002039 24.39895971 0.961677542 0.817925805 0.38597511 0.077790227 243.4577346 848356.5569 0.020681125 0.040508209 9.84E-06 5.007002039 -0.143751737 DICNDVLSLLEK ddPTM_HeLa_A486_30min_R1 1 DICNDVLSLLEK 12 0 E7EX29;P63104;E7ESK7;B0AZS6 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 160.52 2.73E-06 0 23733 27191 15468 15214 40283 28742 36209 33676 28450 32007 FALSE FALSE TRUE 22069.43926 25036.28613 21457.62385 35418.96087 35230.33052 25196.10427 27149.12522 26008.70994 30916.06891 23992.23887 0.919857433 1.043516042 0.894356878 1.476267432 1.468405292 1.050177285 1.131579482 1.084046807 1.288586241 1 14.55028017 -5.227975362 24.96656809 1.217974925 0.961670665 0.365836929 0.157627602 749.0435984 558839.6076 0.045292092 0.078442922 5.92E-06 5.227975362 -0.25630426 DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_HeLa_A485_30min_R1 3 DIDHETVVEEQIIGENSPPDYSEYMTGK 28 0 P25490;A0A494C032;H0YJU4;H0YJV7 P25490 YY1 Transcriptional repressor protein YY1 1 0 DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(0.992)PPDY(0.006)S(0.001)EYMTGK ;; 288.02 3.78E-78 906730000 371949 350506 255061 369456 428696 374782 461827 482957 347168 557631 TRUE FALSE FALSE 454687.7718 391494.6277 349418.6779 389638.4458 386013.521 394405.006 363153.8887 364511.0385 416841.4332 418623.8541 1.08614874 0.935194265 0.834684107 0.930760256 0.922101111 0.942146517 0.867494494 0.870736426 0.99574219 1 18.675295 -4.277009792 4.444418448 0.913519597 1.095894345 0.48258468 0.050671473 0.143794411 6.988373318 0.012212262 0.079995744 5.28E-05 4.277009792 0.182374748 DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_HeLa_A486_30min_R1 3 DIDHETVVEEQIIGENSPPDYSEYMTGK 28 0 P25490;A0A494C032;H0YJU4;H0YJV7 P25490 YY1 Transcriptional repressor protein YY1 1 0 DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK ;; 278.63 2.85E-77 1133550000 470253 497772 319146 136064 454301 509541 564149 530890 481211 503123 TRUE FALSE FALSE 437290.6931 458326.7339 442727.8782 316763.8683 397318.3324 446679.0121 422992.9532 410017.9362 522922.7569 377137.726 1.159498674 1.215276813 1.173915649 0.839915623 1.053509912 1.184392282 1.121587484 1.087183562 1.386556478 1 18.52473195 DIDIHEVR ddPTM_HeLa_A485_30min_R1 4 DIDIHEVR 8 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ;;; ;;; 147.51 0.0010054 578964000 659681 675142 728334 815031 971064 971911 1197069 1197470 740358 1128079 FALSE FALSE TRUE 806424.7626 754093.9839 997775.0551 859554.0798 874381.4585 1022798.757 941305.429 903788.6049 888941.0596 846869.6661 0.95224188 0.890448689 1.178191988 1.014978 1.032486454 1.207740457 1.111511566 1.067210978 1.049678711 1 19.69178043 -4.747988275 24.99995594 1.086404358 0.921345208 0.492196932 0.065481879 186.081865 345842.1228 0.016666284 0.043565694 1.79E-05 4.747988275 -0.16505915 DIDIHEVR ddPTM_HeLa_A486_30min_R1 2 DIDIHEVR 8 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 141.48 0.0014205 574550000 668350 875900 781990 299050 1175990 961890 1032920 990810 956510 992640 FALSE FALSE TRUE 621502.1164 806490.494 1084797.47 696203.5132 1028486.369 843221.7916 774472.4909 765224.1922 1039421.057 744076.483 0.835266442 1.083881177 1.457911243 0.935661224 1.382232058 1.133246126 1.04085065 1.028421419 1.396927709 1 19.5050914 -4.325196351 4.104368697 1.171110728 0.824789854 0.2498022 0.174163592 0.269953208 8.23368924 0.041600056 0.231602157 4.73E-05 4.325196351 -0.346320874 DIDIS(ph)SPEFK ddPTM_HeLa_A485_30min_R1 2 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DIDIS(0.5)S(0.5)PEFK;DIDIS(0.651)S(0.349)PEFK ; 101.93 0.0014026 378041000 549370 485650 328570 804370 655060 592100 850740 837150 467420 1207280 TRUE FALSE FALSE 671575.4612 542442.5429 450121.7159 848310.6963 589839.9263 623101.4404 668972.4491 631837.6499 561226.9066 906327.3143 0.74098557 0.598506229 0.496643662 0.935987124 0.650802328 0.687501558 0.738113525 0.697140691 0.619232034 1 19.78967264 -10.32307614 3.521107279 1.001295776 0.685277449 0.43171589 0.108424421 262921457.7 408732250.8 3602965.7 0.026922567 4.75E-11 10.32307614 -0.316018327 DIDIS(ph)SPEFK ddPTM_HeLa_A486_30min_R1 3 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DIDIS(0.5)S(0.5)PEFK;DIDIS(0.811)S(0.189)PEFK;DIDIS(0.674)S(0.326)PEFK ;; 244 6.37E-39 213581000 978541 998694 482940 610582.9 922337 1232590 1458814 1396724 778110 1618016 TRUE FALSE FALSE 909950.3291 919553.8503 669947.3016 1421467.848 806648.893 1080525.578 1093803.307 1078720.435 845557.2013 1212854.262 0.750255292 0.758173409 0.552372468 1.172002188 0.665083117 0.890894819 0.901842325 0.889406476 0.69716307 1 20.20997477 -1 0.155386348 0.948938587 0.081582032 0.11666273 0.160507289 151.9993495 1.538185287 0.507673749 29.96850413 0.1 1 -0.867356555 DIDISS(ph)PEFK ddPTM_HeLa_A485_30min_R1 7 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DIDIS(0.001)S(0.999)PEFK;DIDIS(0.018)S(0.982)PEFK;DIDIS(0.004)S(0.996)PEFK;DIDISS(1)PEFK;DIDISS(1)PEFK;DIDIS(0.183)S(0.817)PEFK;DIDIS(0.499)S(0.501)PEFK ;;;;;; 299.29 4.56E-43 36378420000 39907300 30847040 21089190 57076840 42779210 34874630 58484940 52800680 28776820 74721370 TRUE FALSE FALSE 48784541.21 34454332.99 28890958.98 60194803.24 38519961.65 36700611.7 45989154.79 39851230.44 34552063.82 56094707.6 0.86968171 0.614217178 0.515038944 1.073092379 0.686695114 0.654261574 0.819848373 0.710427635 0.615959425 1 25.74136133 -10.45526043 2.857838423 1.007535804 0.727977887 0.226598247 0.150300759 28560113.39 32157972 1722800.356 0.03830362 3.51E-11 10.45526043 -0.279557917 DIDISS(ph)PEFK ddPTM_HeLa_A486_30min_R1 7 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DIDISS(1)PEFK;DIDIS(0.454)S(0.546)PEFK;DIDIS(0.048)S(0.952)PEFK;DIDIS(0.001)S(0.999)PEFK;DIDISS(1)PEFK;DIDIS(0.034)S(0.966)PEFK;DIDIS(0.001)S(0.999)PEFK ;;;;;; 303.71 5.99E-77 26423852000 48092890 47153070 23637690 29392480 43438650 54047170 72972420 65460230 35367400 73997970 TRUE FALSE FALSE 44721826.76 43416489 32790836.61 68427178.85 37990169.47 47379379.68 54713948.69 50556364.62 38433074.71 55468396.67 0.806257787 0.782724788 0.59116251 1.233624604 0.684897559 0.854168906 0.986398598 0.911444492 0.69288238 1 25.72516269 DIDNNLITST(ph)PR ddPTM_HeLa_A485_30min_R1 2 DIDNNLITSTPR 12 0 Q05D32;H0YMH7;Q05D32-2;H0YNU2;H0YNW9 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 DIDNNLIT(0.001)S(0.024)T(0.976)PR;DIDNNLITS(0.018)T(0.981)PR ; 172.82 4.87E-10 757650000 868620 1039240 921840 891770 1349250 1031300 1209740 1303150 919870 1054010 TRUE FALSE FALSE 1061841.522 1160770.078 1262866.977 940485.137 1214913.932 1085297.273 951269.1663 983550.4192 1104479.471 791264.7046 1.341954868 1.466980735 1.596010753 1.18858472 1.535407716 1.371598236 1.202213571 1.243010605 1.39584069 1 19.59380088 -12.76821646 0.132850196 0.079004019 1.543592588 0.487502897 0.122026606 81.26507901 0.925389337 21.14772496 0.934224378 1.71E-13 12.76821646 1.464588569 DIDNNLITST(ph)PR ddPTM_HeLa_A486_30min_R1 3 DIDNNLITSTPR 12 0 Q05D32;H0YMH7;Q05D32-2;H0YNU2;H0YNW9 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 DIDNNLITST(1)PR;DIDNNLITS(0.041)T(0.959)PR;DIDNNLIT(0.001)S(0.004)T(0.995)PR ;; 268.44 2.37E-33 1110900000 1389400 1622740 1311040 471426 1802140 1435810 1606780 1680770 1261500 1430210 TRUE FALSE FALSE 1292010.235 1494148.172 1818709.799 1097503.553 1576098.797 1258674.36 1204746.649 1298095.362 1370847.836 1072076.107 1.205147868 1.393695991 1.696437209 1.023717948 1.470137042 1.174053178 1.123751049 1.21082389 1.278685186 1 20.0319759 -6.111528501 1.059999865 1.160195986 1.388096687 0.216403003 0.178718248 0.824641815 1.964281597 0.090820401 0.095129018 7.74E-07 6.111528501 0.2279007 DIEIS(ph)T(ph)EEEKDTGDLK ddPTM_HeLa_A485_30min_R1 2 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 2 0 DIEIS(1)T(1)EEEKDTGDLK;DIEIS(1)T(1)EEEKDTGDLK ; 196.89 2.81E-20 288120000 911260 474810 309930 2117300 712980 592760 1247890 716720 482660 2801400 TRUE FALSE FALSE 1113966.643 530334.8992 424586.0043 2232962.738 641993.2078 623795.997 981268.1072 540943.2962 579525.4348 2103062.536 0.529687836 0.252172672 0.201889386 1.061767161 0.305265867 0.296613147 0.466590075 0.257216933 0.275562626 1 21.00406032 -10.27269027 3.49533378 1.001698406 0.405347422 0.356168109 0.23991289 129790379 199331452.1 2351794.544 0.060965538 5.34E-11 10.27269027 -0.596350984 DIEIS(ph)T(ph)EEEKDTGDLK ddPTM_HeLa_A486_30min_R1 1 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 2 0 DIEIS(1)T(1)EEEKDTGDLK 139.17 2.84E-06 221260000 538480 490900 152420 490440 349410 733910 942750 803120 424870 1312900 TRUE FALSE FALSE 500735.3327 451999.2962 211441.1059 1141769.105 305583.7397 643367.6461 706863.9786 620267.108 461698.0737 984141.2945 0.50880431 0.459282929 0.214848322 1.160167866 0.310507995 0.653735038 0.718254566 0.630262251 0.469137995 1 19.90850593 -14 0.160533622 2.512641199 0.465214574 0.217234742 0.245091111 211.4523797 1.945052744 102.8070068 1.014687049 1.00E-14 14 -2.047426624 DIEIS(ph)TEEEKDTGDLKDSSLLK ddPTM_HeLa_A486_30min_R1 2 DIEISTEEEKDTGDLKDSSLLK 22 2 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 0 DIEIS(0.808)T(0.12)EEEKDT(0.072)GDLKDSSLLK;DIEIS(0.5)T(0.5)EEEKDT(0.001)GDLKDSSLLK ; 90.633 0.00069844 712430000 283520 200450 60189 207186 184604 247010 444250 331620 130179 539140 TRUE FALSE FALSE 263646.7121 184565.612 83495.79272 482339.4786 161449.245 216536.4176 333093.9512 256117.3652 141463.0205 404135.8348 0.652371528 0.456692023 0.206603289 1.193508313 0.399492525 0.535801082 0.824212857 0.633740795 0.3500383 1 18.62448076 -10.98975179 2.879304197 1.384488353 0.588453912 0.185045841 0.261973529 131113404.2 113860095.9 335254174.4 0.063498874 1.02E-11 10.98975179 -0.79603444 DIEIST(ph)EEEKDTGDLK ddPTM_HeLa_A486_30min_R1 1 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 0 DIEIS(0.459)T(0.541)EEEKDTGDLK 72.568 0.0090623 109960000 155030 166840 172060 59057 208680 119150 164950 121850 95285 174730 TRUE FALSE FALSE 144163.1976 153618.9908 238686.2399 137487.6806 182505.4085 104450.4844 123677.7653 94107.41497 103544.3805 130976.4707 1.100680121 1.172874715 1.822359685 1.049712821 1.393421334 0.797475179 0.944274683 0.718506267 0.790557113 1 16.99894814 -6.264217198 24.93246724 0.838451274 1.314560744 0.534234432 0.213471156 187.0241727 1678637.977 0.073402967 0.067653644 5.44E-07 6.264217198 0.47610947 DIEIST(ph)EEEKDTGDLKDSSLLK ddPTM_HeLa_A486_30min_R1 1 DIEISTEEEKDTGDLKDSSLLK 22 2 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 0 DIEIS(0.482)T(0.515)EEEKDT(0.002)GDLKDSSLLK 53.55 0.031893 121810000 97926 60922 16159 67481 45568 92228 151310 139260 50483 197400 TRUE FALSE FALSE 91061.89309 56094.31885 22416.19755 157099.1783 39852.43654 80849.84707 113450.6376 107553.538 54858.90709 147969.7551 0.615408825 0.379093138 0.151491753 1.0616979 0.269328259 0.54639441 0.766715046 0.726861634 0.370744055 1 17.1749428 -14 0.1457903 2.562239812 0.399168048 0.223645089 0.253962292 205.254012 1.798893487 93.32696586 1.376901118 1.00E-14 14 -2.163071764 DIEVLS(ph)EDT(ph)DYEEDEVTKK ddPTM_HeLa_A486_30min_R1 1 DIEVLSEDTDYEEDEVTKK 19 1 H0Y7Y8;Q4LE39-4;Q4LE39-3;Q4LE39-2;Q4LE39;H7C5R6 H0Y7Y8 ARID4B AT-rich interactive domain-containing protein 4B 2 0 DIEVLS(1)EDT(1)DYEEDEVTKK 126.31 4.03E-06 122760000 116450 104810 45079 78348 80495 150180 191590 175290 84123 207140 TRUE FALSE FALSE 108287.4563 96504.47389 62534.79606 182398.1035 70398.56651 131652.3185 143652.1556 135380.2936 91414.84937 155270.7957 0.697410326 0.621523664 0.402746671 1.174709659 0.453392192 0.847888477 0.925171761 0.871897983 0.588744644 1 17.24442698 -2.88734585 0.094634374 1.118047303 2.09E-13 0.142564542 0.217386832 184.8693314 1.907799819 4.090343943 27.43010889 0.001296147 2.88734585 -1.118047303 DIFYYEDDS(ph)EGEDIEKESEGQAPCMAHACNSSTLGGQGR ddPTM_HeLa_A485_30min_R1 1 DIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGR 39 1 Q15361;A0A087WY09 Q15361 TTF1 Transcription termination factor 1 1 0 DIFYYEDDS(1)EGEDIEKESEGQAPCMAHACNSSTLGGQGR 356.22 2.27E-150 138250000 17301 15703 13417 20660 23847 22957 31559 36711 14103 35279 TRUE FALSE FALSE 21149.54776 17539.32925 18380.50663 21788.60349 21472.70895 24158.99302 24816.16184 27707.56969 16933.34274 26484.59456 0.798560375 0.66224647 0.694007476 0.822689713 0.81076223 0.912190404 0.937003652 1.046176849 0.639365753 1 14.6928658 -5.75801771 1.467758524 0.910727396 0.714940358 0.348176105 0.107767125 0.427535643 1.918685228 0.039347611 0.054427616 1.75E-06 5.75801771 -0.195787038 DIFYYEDDS(ph)EGEDIEKESEGQAPCMAHACNSSTLGGQGR ddPTM_HeLa_A486_30min_R1 1 DIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGR 39 1 Q15361;A0A087WY09 Q15361 TTF1 Transcription termination factor 1 1 0 DIFYYEDDS(1)EGEDIEKESEGQAPCMAHACNSSTLGGQGR 224.62 3.34E-40 129030000 22917 19269 10107 5218.7 23886 24354 29477 20916 11636 18535 TRUE FALSE FALSE 21310.63664 17742.05426 14020.70107 12149.39734 20889.99515 21349.45109 22101.54282 16153.88339 12644.61785 13893.71536 1.533832823 1.276984148 1.009139796 0.874452731 1.503557156 1.536626492 1.590758286 1.162675568 0.910096221 1 13.76214483 -7.554609878 5.540649636 0.971487172 1.318856219 0.309933782 0.224062284 0.267507583 22.53309608 0.173941016 0.065122734 2.79E-08 7.554609878 0.347369048 DIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 DIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLSPK 37 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 DIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLS(1)PK 98.144 2.83E-05 364170000 40025 33907 23599 47828 57081 55919 103240 101360 33766 128530 TRUE FALSE FALSE 37219.45419 31220.08583 32737.1648 111346.0011 49921.36872 49020.28232 77408.26004 78282.54067 36692.86407 96345.25141 0.386313323 0.324043846 0.339790123 1.155697862 0.518150796 0.508798115 0.803446552 0.812521007 0.380847665 1 16.55592594 -5.117579051 18.97456984 0.718382685 0.347036069 0.393561074 0.220626186 3.403538852 535.1350957 0.058284704 0.10095333 7.63E-06 5.117579051 -0.371346616 DIHS(ph)S(ph)S(ph)QLCS(ph)YR ddPTM_HeLa_A485_30min_R1 1 DIHSSSQLCSYR 12 0 A0A075B795 A0A075B795 CYP2F1 4 0 DIHS(1)S(1)S(1)QLCS(1)Y(0.001)R 47.062 0.029632 4607400000 0 0 0 0 0 11246 11066 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 11834.82317 8701.658699 0 0 0 0 DIIDYES(ph)DVEPETKR ddPTM_HeLa_A485_30min_R1 1 DIIDYESDVEPETKR 15 1 F5GYN7;Q5FWF4-2;Q5FWF4-3;Q5FWF4 F5GYN7 ZRANB3 DNA annealing helicase and endonuclease ZRANB3;DNA annealing helicase ZRANB3;Endonuclease ZRANB3 1 0 DIIDYES(1)DVEPETKR 92.439 0.00062077 57402000 66561 62505 58199 103010 89453 74512 108450 123980 69051 108500 TRUE FALSE FALSE 81367.26482 69814.41603 79729.23196 108637.1755 80546.74523 78413.3331 85278.77154 93573.71061 82908.90233 81452.94679 0.99894808 0.857113447 0.978837907 1.3337415 0.988874539 0.962682582 1.046969752 1.148806941 1.017874805 1 16.31367927 -5.010309818 24.9543604 1.075260135 0.925516953 0.238322648 0.105918178 645.127949 1561510.089 0.028514925 0.054042716 9.77E-06 5.010309818 -0.149743182 DIIDYES(ph)DVEPETKR ddPTM_HeLa_A486_30min_R1 1 DIIDYESDVEPETKR 15 1 F5GYN7;Q5FWF4-2;Q5FWF4-3;Q5FWF4 F5GYN7 ZRANB3 DNA annealing helicase and endonuclease ZRANB3;DNA annealing helicase ZRANB3;Endonuclease ZRANB3 1 0 DIIDYES(0.999)DVEPETKR 77.39 0.0035117 64876000 72586 77615 37315 30682 64753 72476 98575 90865 56491 91942 TRUE FALSE FALSE 67498.09623 71464.50473 51764.36733 71429.24658 56631.07494 63534.648 73910.49238 70177.02307 61387.68536 68919.12476 0.979381216 1.036932854 0.751088577 1.036421267 0.821703339 0.921872531 1.072423549 1.018251803 0.890720618 1 16.07261676 -6.644421894 24.98061526 0.99692232 0.922191341 0.12189826 0.092899178 14.42368525 3032.498516 0.034851411 0.026995785 2.27E-07 6.644421894 -0.074730979 DIIHDPGR ddPTM_HeLa_A485_30min_R1 5 DIIHDPGR 8 0 P62917;E9PKZ0;E9PKU4;G3V1A1 P62917 RPL8 60S ribosomal protein L8 0 0 ;;;; ;;;; 108.98 0.0044272 1230004000 830170 1102426 1041309 890503 1297997 1081430 1272749 1416302 995231 1259712 FALSE FALSE TRUE 1014838.452 1231345.131 1426532.532 939148.924 1168763.861 1138052.003 1000815.779 1068951.714 1194964.733 945688.9817 1.073120732 1.302061412 1.508458446 0.993084346 1.235886093 1.20341045 1.058292735 1.130341724 1.263591684 1 19.85100626 -5.277780759 24.9915767 1.136739682 1.295298355 0.255641867 0.130668201 1155.093929 1766532.431 0.03665695 0.054544291 5.27E-06 5.277780759 0.158558673 DIIHDPGR ddPTM_HeLa_A486_30min_R1 4 DIIHDPGR 8 0 P62917;E9PKZ0;E9PKU4;G3V1A1 P62917 RPL8 60S ribosomal protein L8 0 0 ;;; ;;; 108.81 0.0044539 1550750000 1284810 1383570 1128660 452111 1673670 1208850 1398960 1423590 1100350 1400520 FALSE FALSE TRUE 1194751.454 1273930.874 1565707.379 1052537.256 1463742.702 1059714.378 1048925.411 1099469.634 1195729.224 1049820.676 1.138052889 1.213474742 1.491404593 1.002587661 1.39427879 1.009424182 0.999147221 1.047292798 1.138984258 1 20.00171149 -6.284193288 24.88933159 1.039436567 1.245936843 0.39355971 0.129700428 800.1802977 875273.0339 0.044147115 0.038960682 5.20E-07 6.284193288 0.206500276 DIIRQPS(ph)EEEIIK ddPTM_HeLa_A485_30min_R1 4 DIIRQPSEEEIIK 13 1 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK ;;; 257.15 1.46E-41 1544730000 635117 870366 604672 543601 1210870 1004350 1624210 2096490 910138 965047 TRUE FALSE FALSE 776396.5855 972147.7325 828365.3353 573296.5462 1090311.531 1056936.213 1277184.265 1582322.54 1092794.348 724478.5433 1.071662636 1.341858557 1.143395264 0.791323016 1.504960418 1.458892362 1.762901437 2.184084753 1.508387458 1 19.46658344 -6.089683156 2.413458404 1.680007088 1.113730073 0.329079179 0.31456242 0.305831544 3.507886523 0.112700167 0.11620525 8.13E-07 6.089683156 -0.566277015 DIIRQPS(ph)EEEIIK ddPTM_HeLa_A486_30min_R1 4 DIIRQPSEEEIIK 13 1 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK ;;; 233.79 1.33E-29 1541170000 982740 760500 477649 460682 1184730 923140 1424910 1741990 588443 1323680 TRUE FALSE FALSE 913855.0009 700235.2103 662607.4847 1072490.978 1036130.116 809252.3726 1068382.447 1345376.904 639449.713 992221.9123 0.921018766 0.705724397 0.667801705 1.080898299 1.044252403 0.815596151 1.076757562 1.355923395 0.644462398 1 19.92030329 -5.264813529 24.92482551 1.014425009 0.758935896 0.257034971 0.184346408 355.8544627 2628699.619 0.050546214 0.078559901 5.43E-06 5.264813529 -0.255489113 DIISDTSGDFRK ddPTM_HeLa_A485_30min_R1 2 DIISDTSGDFRK 12 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 186.58 1.31E-09 315204000 229964 251025 162840 278878 211711 285711 320054 301978 241499 456090 FALSE FALSE TRUE 281118.6984 280380.1901 223081.2923 294112.399 190632.3095 300670.3862 251671.8483 227917.422 289965.6341 342395.1567 0.82103585 0.818878961 0.651531682 0.858985278 0.556761116 0.878138549 0.735033319 0.665656092 0.846874228 1 18.38530277 -8.027846351 6.921271603 0.999983231 0.748827129 0.396769572 0.096153236 0.214555837 46.83002671 0.087056845 0.022547031 9.38E-09 8.027846351 -0.251156102 DIISDTSGDFRK ddPTM_HeLa_A486_30min_R1 2 DIISDTSGDFRK 12 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 148.18 3.78E-07 387460000 425430 540710 319570 181780 531330 570810 561490 550290 487870 720830 FALSE FALSE TRUE 395609.5539 497862.1704 443316.0624 423193.0267 464685.6369 500389.2658 420999.2632 425000.9797 530158.9644 540329.4762 0.732163562 0.921404795 0.820455078 0.78321292 0.860004233 0.926081748 0.779152872 0.786558939 0.981177204 1 19.04347986 -7.774168815 23.69528142 0.990589025 0.830580477 0.5517587 0.059183824 103.2416896 192168.274 0.05473489 0.014568368 1.68E-08 7.774168815 -0.160008548 DIISIAEDEDLR ddPTM_HeLa_A486_30min_R1 1 DIISIAEDEDLR 12 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 97.734 0.0028751 0 13452 15123 10092 11003 13853 12365 17390 15851 11542 18666 FALSE FALSE TRUE 12509.08427 13924.5984 13999.89267 25615.54006 12115.42757 10839.53202 13038.83807 12242.07332 12542.46985 13991.9121 0.894022502 0.995189099 1.00057037 1.830739063 0.865887913 0.774699836 0.931883932 0.874939267 0.896408565 1 13.77230551 DIKEES(ph)DEEEEDDEESGR ddPTM_HeLa_A485_30min_R1 5 DIKEESDEEEEDDEESGR 18 1 Q96EV2;A8MTF7;Q96EV2-2;H7BXM6;H7C0H2 Q96EV2 RBM33 RNA-binding protein 33 1 0 DIKEES(1)DEEEEDDEESGR;DIKEES(1)DEEEEDDEESGR;DIKEES(1)DEEEEDDEESGR;DIKEES(1)DEEEEDDEESGR;DIKEES(1)DEEEEDDEESGR ;;;; 246.17 6.41E-46 1934860000 911389 697984 520561 1716616 983358 737696 1305247 1008034 694230 2114160 TRUE FALSE FALSE 1114124.339 779607.1571 713138.1763 1810390.385 885451.4247 776320.6219 1026370.316 760812.081 833555.5931 1587138.82 0.701970316 0.491202879 0.449323126 1.14066291 0.557891606 0.489132149 0.646679611 0.479360766 0.525193879 1 20.59799689 -11.26165251 2.261026023 2.527974867 0.608779553 0.269475351 0.193109388 27329309.46 4435165.566 213323122.9 0.052532123 5.47E-12 11.26165251 -1.919195314 DIKEES(ph)DEEEEDDEESGRLR ddPTM_HeLa_A485_30min_R1 2 DIKEESDEEEEDDEESGRLR 20 2 Q96EV2;A8MTF7;Q96EV2-2;H7BXM6;H7C0H2 Q96EV2 RBM33 RNA-binding protein 33 1 0 DIKEES(1)DEEEEDDEESGRLR;DIKEES(1)DEEEEDDEESGRLR ; 265.49 2.26E-59 1980270000 689110 756180 511930 987520 1420130 1113860 1972950 2350360 762370 1521420 TRUE FALSE FALSE 842400.1421 844608.6731 701314.2102 1041465.717 1278736.871 1172179.987 1551413.115 1773930.525 915370.6661 1142157.994 0.737551325 0.739484973 0.614025567 0.911840326 1.119579671 1.026285325 1.358317434 1.553139351 0.801439618 1 20.1233308 -5.660536572 1.823277829 1.193137328 0.696611814 0.500844399 0.197362001 0.27011096 1.843392106 0.067642553 0.096731631 2.19E-06 5.660536572 -0.496525514 DIKEES(ph)DEEEEDDEESGRLR ddPTM_HeLa_A486_30min_R1 2 DIKEESDEEEEDDEESGRLR 20 2 Q96EV2;A8MTF7;Q96EV2-2;H7BXM6;H7C0H2 Q96EV2 RBM33 RNA-binding protein 33 1 0 DIKEES(1)DEEEEDDEESGRLR;DIKEES(1)DEEEEDDEESGRLR ; 183.25 2.61E-19 1740310000 717650 628630 433090 730240 946240 738160 1268040 1324310 466710 1330070 TRUE FALSE FALSE 667346.4409 578815.0694 600794.0466 1700035.624 827553.7559 647093.3243 950762.98 1022793.522 507164.7986 997011.8147 0.669346573 0.58054986 0.602594711 1.705130871 0.830034051 0.649032754 0.953612551 1.025858979 0.508684843 1 19.92725108 DIKFDDS(ph)DTEQIAEEGDDNLAK ddPTM_HeLa_A485_30min_R1 1 DIKFDDSDTEQIAEEGDDNLAK 22 1 E9PDH4 E9PDH4 PIKFYVE 1 0 DIKFDDS(0.981)DT(0.019)EQIAEEGDDNLAK 126.42 1.19E-06 53652000 51411 37597 20809 102380 54085 46146 103300 87301 38873 134850 TRUE FALSE FALSE 62847.19958 41993.6421 28507.11503 107972.7602 48700.1075 48562.1332 81229.11112 65890.29287 46674.45454 101234.3767 0.620808876 0.414816028 0.281595205 1.066562206 0.481062946 0.479700027 0.802386637 0.650868756 0.461053409 1 16.62733975 -14 0.213120017 2.965321873 0.53198973 0.25179276 0.211623891 217.3858294 2.170567245 183.5146144 0.443125571 1.00E-14 14 -2.433332143 DIKFDDS(ph)DTEQIAEEGDDNLAK ddPTM_HeLa_A486_30min_R1 1 DIKFDDSDTEQIAEEGDDNLAK 22 1 E9PDH4 E9PDH4 PIKFYVE 1 0 DIKFDDS(0.863)DT(0.137)EQIAEEGDDNLAK 110.03 6.94E-05 40454000 39986 42666 23481 21851 42068 44656 54767 59152 31655 66810 TRUE FALSE FALSE 37183.18789 39284.99077 32573.47204 50870.23229 36791.43917 39146.79675 41063.71733 45684.38088 34398.88089 50080.34114 0.742470739 0.78443936 0.650424324 1.015772479 0.734648334 0.781679914 0.819956821 0.912221839 0.686873933 1 15.61195677 -14 0.230417597 2.070130182 0.774631247 0.263649047 0.101976951 223.0909626 2.233385268 111.7035142 0.17112563 1.00E-14 14 -1.295498936 DILNPDS(ph)SMETSPDFFF ddPTM_HeLa_A485_30min_R1 2 DILNPDSSMETSPDFFF 17 0 Q16666-3;Q16666-2;Q16666;Q16666-6;A0A0A0MRB1 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 DILNPDS(0.495)S(0.495)MET(0.01)SPDFFF;DILNPDS(0.612)S(0.384)MET(0.004)SPDFFF ; 86.313 0.0010991 94899000 19324.4 30071 29211 22575.7 32331 29024.8 33444 33696 23905.6 36825 TRUE FALSE FALSE 23623.04611 33587.54187 40017.36447 23808.95333 29112.01212 30544.49365 26298.41619 25432.00317 28703.23464 27645.20521 0.854507895 1.214949992 1.447533638 0.861232649 1.053058275 1.104874911 0.951283088 0.919942644 1.038271716 1 14.75474166 -5.295968093 24.99781656 0.992297883 1.176592851 0.239979812 0.148745731 862.6540224 624535.4166 0.042541112 0.063102438 5.06E-06 5.295968093 0.184294968 DILNPDSS(ph)METSPDFFF ddPTM_HeLa_A486_30min_R1 1 DILNPDSSMETSPDFFF 17 0 Q16666-3;Q16666-2;Q16666;Q16666-6;A0A0A0MRB1 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 DILNPDS(0.156)S(0.839)MET(0.005)SPDFFF 153.38 3.30E-08 53316000 8572 10248 7668.2 4275.3 10816 7389.4 10400 10756 9385.1 12169 TRUE FALSE FALSE 7971.147066 9435.911157 10637.5324 9953.114462 9459.356425 6477.770958 7797.81 8307.093602 10198.60802 9121.803193 0.873856506 1.034434854 1.166165524 1.091134532 1.037005099 0.710141495 0.854854006 0.910685467 1.118047365 1 13.15510333 -6.038242197 24.99353764 0.905215036 1.051594736 0.201746758 0.118944036 807.8060144 527947.1142 0.040957389 0.040966426 9.16E-07 6.038242197 0.1463797 DINTFLGT(ph)PVQK ddPTM_HeLa_A485_30min_R1 2 DINTFLGTPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 DINTFLGT(1)PVQK;DINT(0.02)FLGT(0.98)PVQK ; 163.64 1.28E-09 175931000 395020 327650 238617 435770 375940 252631 321580 339916 301516 591000 TRUE FALSE FALSE 482890.8362 365965.8173 326891.358 459575.0117 338510.0936 265858.3685 252871.8059 256551.068 362027.4955 443674.5765 1.088389693 0.8248519 0.736781811 1.035838058 0.762969328 0.599219298 0.56994883 0.578241535 0.8159753 1 18.75914236 -1.000000302 0.505734828 0.705570382 12.51619331 0.269828657 0.154621452 139.8733197 1.466118459 0.086873348 1759.676318 0.099999931 1.000000302 11.81062293 DINTFLGT(ph)PVQK ddPTM_HeLa_A486_30min_R1 4 DINTFLGTPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 DINTFLGT(1)PVQK;DINT(0.002)FLGT(0.998)PVQK;DINT(0.001)FLGT(0.999)PVQK;DINT(0.001)FLGT(0.999)PVQK ;;; 176.33 6.93E-10 251736000 926510 969970 558411 300856 639330 909920 876690 757070 778960 1030230 TRUE FALSE FALSE 861566.4335 893106.0446 774642.694 700407.9724 559139.2699 797663.3218 657332.8893 584701.6877 846480.88 772253.7023 1.11565206 1.156493057 1.003093532 0.906966157 0.724035726 1.032903202 0.851187747 0.757136788 1.096117607 1 19.55871536 -4.987674509 2.808235925 0.895211676 1.136801755 0.393324471 0.110545956 0.242145961 3.856632956 0.029934941 0.068994507 1.03E-05 4.987674509 0.241590079 DINTFVGT(ph)PVEK ddPTM_HeLa_A485_30min_R1 2 DINTFVGTPVEK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 DINTFVGT(1)PVEK;DINTFVGT(1)PVEK ; 215.23 3.45E-22 211970000 1094640 887770 655670 1364190 1015780 697250 944490 723700 844960 1870700 TRUE FALSE FALSE 1338138.892 991586.9789 898229.6177 1438712.245 914645.3766 733756.9318 742691.9957 546211.4403 1014535.722 1404368.918 0.952840009 0.706073003 0.639596623 1.024454634 0.651285688 0.522481609 0.528843943 0.388937289 0.722413967 1 20.42149054 -5.983817799 24.88988957 0.587754361 0.81189398 0.190249248 0.184735256 319.7859119 491860.8153 0.055175934 0.062546639 1.04E-06 5.983817799 0.224139619 DINTFVGT(ph)PVEK ddPTM_HeLa_A486_30min_R1 2 DINTFVGTPVEK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 DINT(0.014)FVGT(0.986)PVEK;DINTFVGT(1)PVEK ; 220.34 2.76E-22 541080000 1420770 1413530 735370 408000 882680 1394630 1349930 1219500 1173100 1545710 TRUE FALSE FALSE 1321181.36 1301516.735 1020124.958 949844.6192 771966.0437 1222574.73 1012163.236 941846.4715 1274785.253 1158654.155 1.140272405 1.123300451 0.880439563 0.819782689 0.666260972 1.05516795 0.873568037 0.812879725 1.100229302 1 20.14401857 -4.7542919 8.681306183 0.887486151 1.1326671 0.365253948 0.120625523 0.124417706 80.32392025 0.030960759 0.074894382 1.76E-05 4.7542919 0.245180949 DINVSVGSQQPDTKDS(ph)PVCPHFTTNGNENSSIEK ddPTM_HeLa_A485_30min_R1 1 DINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEK 34 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 DINVSVGSQQPDTKDS(1)PVCPHFTTNGNENSSIEK 337.78 1.55E-128 520980000 231650 163010 112870 246480 233700 242090 363720 350440 184600 430590 TRUE FALSE FALSE 283179.7433 182072.6015 154625.3099 259944.5783 210432.0074 254765.4581 286008.2507 264494.0405 221647.5267 323251.8374 0.876034443 0.563253106 0.478343174 0.804154991 0.650984722 0.788133055 0.884784609 0.81822904 0.68568064 1 18.30229905 -6.365797462 3.519542309 0.832932212 0.663903879 0.288051023 0.127395547 0.342941902 7.893807814 0.047595759 0.041547134 4.31E-07 6.365797462 -0.169028334 DINVSVGSQQPDTKDS(ph)PVCPHFTTNGNENSSIEK ddPTM_HeLa_A486_30min_R1 2 DINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEK 34 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 DINVSVGSQQPDT(0.003)KDS(0.997)PVCPHFTTNGNENSSIEK;DINVSVGSQQPDT(0.034)KDS(0.965)PVCPHFTTNGNENSSIEK ; 188.65 2.49E-21 1103010000 484901 417992 155406 56631.5 294086 412816 542905 491192 321912 550518 TRUE FALSE FALSE 450911.9439 384868.7916 215583.3651 131840.994 257198.9916 361886.9591 407064.4267 379358.3042 349815.5914 412664.7095 1.09268356 0.932642852 0.52241774 0.319486961 0.62326384 0.876951556 0.986428976 0.919289427 0.847699314 1 18.65461054 -6.379871865 4.822826394 0.931094704 0.681221691 0.242863797 0.201856457 0.377536708 13.36071616 0.082561773 0.072210714 4.17E-07 6.379871865 -0.249873013 DIPDRGAAT(ph)DEK ddPTM_HeLa_A486_30min_R1 1 DIPDRGAATDEK 12 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 DIPDRGAAT(1)DEK 70.488 0.026841 474330000 169840 478930 732260 4801.3 923170 339780 244040 401140 436610 65492 TRUE FALSE FALSE 157935.0931 440977.8426 1015810.683 11177.66904 807377.4104 297861.3982 182978.6108 309809.1788 474455.7063 49092.37692 3.217100148 8.982613396 20.69182114 0.22768645 16.44608514 6.067365586 3.727230627 6.310739024 9.664549491 1 15.5832114 -6.488045028 24.65034749 5.515203196 10.05557498 0.13276576 5.83014226 1106.050459 782706.13 1.994823513 1.758348886 3.25E-07 6.488045028 4.540371786 DIPRT(ph)PSR ddPTM_HeLa_A485_30min_R1 8 DIPRTPSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DIPRT(0.991)PS(0.009)R;DIPRT(0.989)PS(0.011)R;DIPRT(0.97)PS(0.03)R;DIPRT(0.998)PS(0.002)R;DIPRT(0.986)PS(0.014)R;DIPRT(1)PSR;DIPRT(1)PSR;DIPRT(0.993)PS(0.007)R ;;;;;;; 170.89 2.69E-05 11337290000 2753253 3414307 3320535 2840561 3968999 3228548 3702481 3574906 3065814 3412998 TRUE FALSE FALSE 3365704.631 3813580.503 4548939.075 2995733.655 3573831.524 3397589.781 2911415.688 2698154.698 3681094.748 2562200.41 1.313599287 1.488400551 1.775403305 1.169203487 1.394829034 1.326043727 1.136295067 1.053061536 1.436692748 1 21.28895189 -6.074001638 0.962591184 1.1608252 1.494353316 0.347771228 0.177683524 0.627251557 1.255472386 0.096152095 0.106608294 8.43E-07 6.074001638 0.333528116 DIPRT(ph)PSR ddPTM_HeLa_A486_30min_R1 4 DIPRTPSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DIPRT(0.996)PS(0.004)R;DIPRT(0.967)PS(0.033)R;DIPRT(0.836)PS(0.164)R;DIPRT(0.975)PS(0.025)R ;;; 135.99 0.0005667 5912610000 1653860 1822510 1527000 566100 2037400 1669270 1810100 1898240 1435190 1784770 TRUE FALSE FALSE 1537932.955 1678087.67 2118295.294 1317909.409 1781850.294 1463332.439 1357193.835 1466052.19 1559593.425 1337851.975 1.149553899 1.254314903 1.583355509 0.985093593 1.331874024 1.093792487 1.014457399 1.095825411 1.165744383 1 20.35148707 -6.072378833 1.232943517 1.072066602 1.288597328 0.262897923 0.149480052 0.631130898 1.991914071 0.068202546 0.072800095 8.46E-07 6.072378833 0.216530725 DIQRPDSEHGLS(ph)PDSENFDWK ddPTM_HeLa_A486_30min_R1 2 DIQRPDSEHGLSPDSENFDWK 21 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 DIQRPDS(0.167)EHGLS(0.831)PDS(0.002)ENFDWK;DIQRPDS(0.054)EHGLS(0.946)PDSENFDWK ; 131.94 5.89E-07 180851000 378630 344960 242790 42071 400920 320150 365310 370030 268490 239590 TRUE FALSE FALSE 352089.9922 317624.1133 336804.7901 97943.41415 350632.8752 280653.148 273905.5741 285782.2467 291762.9294 179595.1045 1.960465421 1.768556632 1.875356185 0.545356815 1.952352076 1.562699322 1.525128287 1.591258556 1.624559479 1 17.4543885 -11.91771551 0.240362687 1.37E-39 1.661171809 0.182508023 0.38391403 105.6419735 2.577276849 56.09038191 0.645480564 1.21E-12 11.91771551 1.661171809 DIRPVCR ddPTM_HeLa_A486_30min_R1 1 DIRPVCR 7 1 O00148;O00148-2;K7EQN7;O00148-3 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 0 64.523 0.036881 29710000 8436.3 7612.7 7258.3 3793.3 10144 8975.6 9942.5 9116.6 8819.5 9792.5 FALSE FALSE TRUE 7844.958935 7009.441927 10068.90814 8830.994103 8871.644931 7868.281729 7454.781339 7040.949194 9583.981361 7340.394262 1.068738089 0.954913548 1.37171217 1.20306809 1.208606052 1.071915411 1.015583233 0.95920586 1.3056494 1 12.84164184 -6.332519607 7.700121754 1.064027573 1.163834515 0.104480062 0.132404294 0.73013337 71.26357672 0.048248585 0.042529898 4.65E-07 6.332519607 0.099806942 DIS(ph)ENKR ddPTM_HeLa_A485_30min_R1 3 DISENKR 7 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 DIS(1)ENKR;DIS(1)ENKR;DIS(1)ENKR ;; 120.76 0.0011735 1166660000 1559610 1238760 596900 2813270 764340 1620440 1672110 2265770 1228170 3122070 TRUE FALSE FALSE 1906539.864 1383622.206 817718.1491 2966951.817 688239.6258 1705283.733 1314850.039 1710086.355 1474652.454 2343795.406 0.813441249 0.590334038 0.348886318 1.265874917 0.293643218 0.72757363 0.560991815 0.729622709 0.629172858 1 21.16041521 -10.485476 2.847260062 1.011692556 0.658692613 0.136930989 0.254307673 49598697.88 54067348.32 4553423.249 0.06193908 3.27E-11 10.485476 -0.352999943 DIS(ph)ENKR ddPTM_HeLa_A486_30min_R1 3 DISENKR 7 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 DIS(1)ENKR;DIS(1)ENKR;DIS(1)ENKR ;; 108.57 0.0018528 635860000 875730 407601 461530 551620 375796 1689710 866910 746160 1024080 1653240 TRUE FALSE FALSE 814345.8493 375301.2123 640246.7762 1284199.237 328660.1615 1481250.76 649999.9488 576275.6566 1112848.079 1239257.943 0.657123768 0.302843499 0.516637218 1.036264681 0.265207226 1.195272355 0.52450739 0.465016714 0.897995518 1 20.24104508 -14 0.054036095 2.380713964 1.01E-12 0.159741638 0.283109972 937.9856844 3.72250049 179.9090773 35.65128966 1.00E-14 14 -2.380713964 DIS(ph)LDSELHDLR ddPTM_HeLa_A485_30min_R1 3 DISLDSELHDLR 12 0 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 DIS(1)LDSELHDLR;DIS(1)LDSELHDLR;DIS(0.999)LDS(0.001)ELHDLR ;; 228.03 1.81E-23 222868000 256261 329063 320586 321323 515623 367099 456430 516141 347689 458543 TRUE FALSE FALSE 313265.3754 367544.0554 439184.1021 338876.0619 464285.7637 386319.736 358910.0018 389556.6105 417466.9931 344236.669 0.910029069 1.067707448 1.275820218 0.984427554 1.348739996 1.12225039 1.042625711 1.13165344 1.212732491 1 18.39304126 -4.364720561 3.645382938 1.143646617 0.90526661 0.28108122 0.110502387 0.290301176 6.238225356 0.026590498 0.151332606 4.32E-05 4.364720561 -0.238380007 DIS(ph)LDSELHDLR ddPTM_HeLa_A486_30min_R1 2 DISLDSELHDLR 12 0 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 DIS(1)LDSELHDLR;DIS(1)LDSELHDLR ; 248.68 2.03E-28 248240000 412580 475010 355970 119927 577620 467610 543170 559850 400910 484560 TRUE FALSE FALSE 383660.2726 437368.4776 493811.1172 279196.1168 505169.5135 409921.0325 407263.1209 432384.3764 435661.2016 363223.022 1.056266396 1.204132038 1.359525931 0.768663052 1.390797066 1.128565668 1.121248093 1.190410162 1.199431686 1 18.47049612 -10.1035433 5.316139427 0.999997269 1.159425361 0.078072918 0.16244357 4.96E-06 8.37E-07 0.148247254 0.035954624 7.88E-11 10.1035433 0.159428093 DIS(ph)SSLNSLADSNAR ddPTM_HeLa_A486_30min_R1 1 DISSSLNSLADSNAR 15 0 O94776 O94776 MTA2 Metastasis-associated protein MTA2 1 0 DIS(0.925)S(0.074)S(0.001)LNSLADSNAR 82.121 0.0018382 0 98727 108820 81045 39220 118680 82901 93813 105910 80695 96399 TRUE FALSE FALSE 91806.74713 100196.7069 112427.7945 91306.14207 103794.0478 72673.5175 70339.99515 81796.605 87689.70757 72260.06295 1.270504666 1.386612505 1.555877339 1.263576841 1.436395756 1.005721757 0.973428368 1.13197528 1.213529355 1 16.14091089 -6.260219401 24.99996323 1.067460489 1.385831564 0.711170279 0.101203925 63.89114184 1309276.475 0.035405978 0.033522943 5.49E-07 6.260219401 0.318371075 DISEGGES(ph)PVVQS(ph)DEEEVQVDTALATSHTDR ddPTM_HeLa_A486_30min_R1 1 DISEGGESPVVQSDEEEVQVDTALATSHTDR 31 0 D6RJC6;A0A087WYP9;A6NFV8;Q96EV8-3;Q96EV8 D6RJC6 DTNBP1 Dysbindin 2 0 DISEGGES(1)PVVQS(1)DEEEVQVDTALATSHTDR 144.36 6.06E-20 0 57739 69533 66099 30845 84731 76826 66870 75585 60234 63569 TRUE FALSE FALSE 53691.79426 64022.95185 91694.30299 71808.71882 74103.24789 67347.98923 50138.41872 58375.94551 65455.13162 47650.90864 1.126773776 1.343583022 1.924292854 1.506974806 1.555127699 1.41336212 1.052202784 1.225075181 1.373638688 1 15.5402161 -6.596611469 5.519942957 1.183262883 1.506109251 0.355388122 0.209013572 0.25051942 13.57485988 0.085098617 0.06555371 2.53E-07 6.596611469 0.322846367 DISGPS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 DISGPSPSK 9 0 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 DISGPS(0.995)PS(0.005)K;DIS(0.002)GPS(0.991)PS(0.006)K;DISGPS(0.999)PS(0.001)K;DISGPS(1)PSK ;;; 237.8 7.99E-16 6667720000 6325240 5230960 3721700 9563300 6612920 5667910 8839100 7384140 4881020 11815700 TRUE FALSE FALSE 7732267.816 5842675.269 5098511.703 10085718.86 5954514.465 5964673.003 6950554.076 5573168.087 5860595.943 8870263.442 0.871706671 0.658681144 0.574786954 1.137025854 0.671289472 0.672434708 0.783579216 0.628297922 0.660701453 1 23.08054552 -10.12220732 4.80894108 1.00001328 0.738282513 0.203154674 0.154549881 2.59E-05 4.73E-06 0.14882893 0.03609415 7.55E-11 10.12220732 -0.261730767 DISGPS(ph)PSK ddPTM_HeLa_A486_30min_R1 6 DISGPSPSK 9 0 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 DISGPS(0.959)PS(0.041)K;DIS(0.001)GPS(0.995)PS(0.004)K;DIS(0.001)GPS(0.989)PS(0.011)K;DISGPS(0.999)PS(0.001)K;DISGPS(0.999)PS(0.001)K;DISGPS(0.999)PS(0.001)K ;;;;; 219.93 5.03E-12 11041200000 14005030 14559950 6569610 6347090 11463270 16348860 19094300 16653490 11002810 21011400 TRUE FALSE FALSE 13023349.72 13406166.54 9113538.932 14776346.28 10025439.79 14331903.88 14316704.18 12861853.87 11956542.43 15750008.68 0.826878892 0.851184708 0.578637074 0.938180199 0.636535509 0.909961649 0.90899659 0.816625193 0.759145133 1 23.90884929 DISGPS(ph)PSKK ddPTM_HeLa_A485_30min_R1 5 DISGPSPSKK 10 1 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 DIS(0.355)GPS(0.633)PS(0.011)KK;DISGPS(0.992)PS(0.008)KK;DISGPS(0.959)PS(0.041)KK;DIS(0.004)GPS(0.98)PS(0.016)KK;DISGPS(0.985)PS(0.014)KK ;;;; 180.61 9.27E-10 8149720000 11562060 7425920 4393620 19096730 9748850 9335500 16837460 13295250 7401120 23345790 TRUE FALSE FALSE 14134000.36 8294316.747 6019002.872 20139936 8778220.264 9824292.345 13239999.12 10034569.09 8886456.897 17526114.2 0.806453741 0.473254747 0.34343054 1.149138695 0.500865175 0.560551656 0.755444074 0.572549567 0.50704091 1 24.06300283 -10.21438365 4.966518824 1.000046606 0.628277111 0.210273829 0.215176429 0.000108837 1.72E-05 0.20420482 0.049520749 6.10E-11 10.21438365 -0.371769495 DISGPS(ph)PSKK ddPTM_HeLa_A486_30min_R1 4 DISGPSPSKK 10 1 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 DISGPS(0.972)PS(0.027)KK;DIS(0.002)GPS(0.997)PS(0.001)KK;DIS(0.001)GPS(0.987)PS(0.013)KK;DISGPS(0.973)PS(0.027)KK ;;; 168.82 1.90E-07 14908600000 15553100 14039430 5034460 8755430 10303420 17629000 23086700 18874400 9932400 25756800 TRUE FALSE FALSE 14462908.01 12926894.44 6983937.74 20383083.51 9011068.988 15454113.22 17310163.47 14577111.15 10793348.43 19307129.63 0.749096747 0.669539941 0.361728433 1.055728319 0.466722354 0.800435565 0.89656846 0.755011823 0.559034338 1 24.20263036 -5.942838776 0.925498824 0.78639402 0.642872238 0.076046606 0.204019842 1.748504517 3.267841851 0.105848393 0.137049389 1.14E-06 5.942838776 -0.143521782 DISLSDYK ddPTM_HeLa_A485_30min_R1 2 DISLSDYK 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 128.69 0.003128 164892000 341130 281730 246280 408440 423160 397520 551920 505250 289360 556080 FALSE FALSE TRUE 417013.1916 314675.8728 337389.2206 430752.043 381028.7046 418333.5325 433997.7832 381336.6453 347431.8978 417459.4899 0.998930918 0.753787806 0.808196313 1.03184154 0.912732166 1.002093718 1.039616523 0.91346982 0.832252964 1 18.67127668 -5.250603513 24.9486898 0.960997185 0.843653288 0.259818481 0.083076866 917.3345652 2112083.402 0.022682044 0.038784957 5.62E-06 5.250603513 -0.117343897 DISLSDYK ddPTM_HeLa_A486_30min_R1 2 DISLSDYK 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 137.9 0.019899 275890000 726050 945040 579380 445140 1498450 1025580 1188200 1172970 831430 1188240 FALSE FALSE TRUE 675157.6443 870151.5886 803731.4523 1036308.416 1310500.429 899054.3669 890899.7925 905910.3368 903499.0218 890696.9699 0.758010487 0.976933366 0.902362397 1.163480343 1.471320183 1.009382986 1.000227712 1.017080295 1.014373072 1 19.76457516 DISMEIDS(ph)PENMMR ddPTM_HeLa_A485_30min_R1 4 DISMEIDSPENMMR 14 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR ;;; 393.84 1.71E-125 689580000 684840 873830 858810 744660 1087480 924090 1018950 1227450 810540 1016920 TRUE FALSE FALSE 837180.2953 976016.8172 1176519.557 785338.8902 979206.6728 972473.9235 801243.0084 926415.9629 973207.9433 763420.559 1.096617435 1.27847856 1.541115894 1.02871069 1.282656933 1.273837745 1.049543399 1.2135067 1.274799233 1 19.54211851 -14 0.181631618 0.056404229 1.275398359 0.186111656 0.140658916 227.2920564 2.193806537 77.36303837 0.432019016 1.00E-14 14 1.218994131 DISMEIDS(ph)PENMMR ddPTM_HeLa_A486_30min_R1 4 DISMEIDSPENMMR 14 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR ;;; 409.14 5.38E-143 711030000 666720 722100 591970 242320 837390 650470 773320 761930 566260 716110 TRUE FALSE FALSE 619986.3709 664878.1662 821196.6375 564133.2062 732356.7378 570221.6249 579827.1567 588455.1718 615343.8727 536791.3949 1.154985674 1.238615545 1.529824519 1.050935636 1.364322798 1.06227788 1.080172227 1.096245539 1.146337066 1 19.03400202 -6.27644003 24.74656563 1.08321973 1.268634901 0.376764644 0.122520742 796.3327718 1313705.698 0.042108248 0.03728144 5.29E-07 6.27644003 0.185415172 DISNGALAFTPLDTADPAKS(ph)PKPSNGAGVPNGALR ddPTM_HeLa_A485_30min_R1 1 DISNGALAFTPLDTADPAKSPKPSNGAGVPNGALR 35 2 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 DISNGALAFT(0.001)PLDT(0.015)ADPAKS(0.882)PKPS(0.102)NGAGVPNGALR 56.346 0.0068585 65448000 73532 53446 31167 125990 54747 73744 128970 122460 54674 174670 TRUE FALSE FALSE 89888.93972 59696.04478 42696.97027 132872.5147 49296.19645 77605.12181 101414.5059 92426.49299 65646.5703 131127.9836 0.685505392 0.455250231 0.325612955 1.013304034 0.37593956 0.59182731 0.773400941 0.704857121 0.500629755 1 17.00061607 -14 0.197317886 2.755898908 0.538341217 0.270502412 0.194279405 187.5593729 1.850581659 129.8504471 0.476758596 1.00E-14 14 -2.217557691 DITDPLSLNTCTDEGHVVLAS(ph)PLK ddPTM_HeLa_A485_30min_R1 5 DITDPLSLNTCTDEGHVVLASPLK 24 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK ;;;; 303.94 6.93E-90 6530980000 2931064 2177063 1781785 4536974 3584490 2279476 3711059 2580901 2311027 5915645 TRUE FALSE FALSE 3583069.075 2431651.58 2440941.418 4784817.401 3227605.59 2398825.839 2918160.928 1947930.983 2774828.921 4440983.571 0.806818809 0.547547979 0.549639822 1.077422901 0.726777197 0.540156432 0.657097889 0.438626028 0.624823055 1 22.0824478 -6.147577373 8.084695104 0.617638774 0.739721794 0.036186265 0.194297005 0.823685349 53.18454704 0.064397201 0.064451425 7.12E-07 6.147577373 0.12208302 DITDPLSLNTCTDEGHVVLAS(ph)PLK ddPTM_HeLa_A486_30min_R1 4 DITDPLSLNTCTDEGHVVLASPLK 24 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK ;;; 226.74 1.91E-38 4914314000 1374571 1647257 847877 729235 1430117 1814451 2154922 1857384 1252180 2147338 TRUE FALSE FALSE 1278220.671 1516722.356 1176197.681 1697695.933 1250738.391 1590602.484 1615737.723 1434498.21 1360719.971 1609630.588 0.79410809 0.94227978 0.73072523 1.054711526 0.777034433 0.988178589 1.003794122 0.891197161 0.845361651 1 20.6182982 -5.254059284 24.99966008 0.930876532 0.834361921 0.240289036 0.092344741 971.7050203 3291586.966 0.024268675 0.040979316 5.57E-06 5.254059284 -0.096514611 DITDPLSLNTCTDEGHVVLAS(ph)PLKTGR ddPTM_HeLa_A485_30min_R1 2 DITDPLSLNTCTDEGHVVLASPLKTGR 27 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DITDPLSLNTCTDEGHVVLAS(0.999)PLKT(0.001)GR;DITDPLSLNTCTDEGHVVLAS(1)PLKTGR ; 297.94 2.72E-92 2251300000 762130 1108650 673230 568420 1306950 1362710 2039980 2762000 720200 882530 TRUE FALSE FALSE 931663.1892 1238296.974 922285.7924 599471.3453 1176825.469 1434059.388 1604121.608 2084615.169 864737.5339 662531.5128 1.40621717 1.869038604 1.392063283 0.904819369 1.77625584 2.164514987 2.421200467 3.14643927 1.305202118 1 19.33762955 -6.047349768 4.431222416 2.158188698 1.416516668 0.166043516 0.599314265 0.308549324 13.11033174 0.196290068 0.203408524 8.97E-07 6.047349768 -0.741672031 DITDPLSLNTCTDEGHVVLAS(ph)PLKTGR ddPTM_HeLa_A486_30min_R1 2 DITDPLSLNTCTDEGHVVLASPLKTGR 27 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DITDPLSLNTCTDEGHVVLAS(0.998)PLKT(0.002)GR;DITDPLSLNTCTDEGHVVLAS(0.999)PLKT(0.001)GR ; 312.34 3.74E-109 1477700000 768530 578000 363060 325750 847060 514630 972880 976240 396540 1050470 TRUE FALSE FALSE 714660.0157 532197.175 503646.5551 758362.4625 740813.8363 451140.183 729455.1339 753971.4632 430912.4065 787425.4746 0.907590672 0.675869898 0.639611711 0.963091095 0.940805016 0.572930642 0.926379902 0.957514695 0.547242146 1 19.58678386 -11.30266255 2.333115179 2.036466395 0.796156191 0.131723754 0.159676485 12743768.35 1076655.904 70545849.72 0.039650631 4.98E-12 11.30266255 -1.240310205 DITSDTSGDFR ddPTM_HeLa_A485_30min_R1 1 DITSDTSGDFR 11 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 0 125.48 0.0029572 29013000 14867 16698 19546 17123 28185 15278 19920 19948 17332 21989 FALSE FALSE TRUE 18174.11286 18650.68585 26776.87878 18058.38613 25378.80244 16077.93246 15663.92927 15055.72172 20810.37342 16507.54698 1.100957815 1.129827822 1.622099202 1.093947281 1.53740604 0.97397466 0.948895029 0.912050818 1.260658137 1 14.01083813 -6.293750907 24.8920894 1.009230059 1.294366084 0.355439494 0.186749322 696.1849436 536323.3707 0.064393245 0.056793458 5.08E-07 6.293750907 0.285136025 DIVEDEDDDFLKGEVPQNDTVIGIT(ph)PSSFDTHFR ddPTM_HeLa_A486_30min_R1 1 DIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFR 34 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 1 0 DIVEDEDDDFLKGEVPQNDT(0.001)VIGIT(0.747)PS(0.185)S(0.059)FDT(0.008)HFR 65.883 0.003728 60731000 17862 20425 8173.7 4146.3 14225 17977 19092 15292 12456 15141 TRUE FALSE FALSE 16609.96604 18806.44861 11338.77554 9652.795942 12440.76786 15759.18052 14314.97967 11810.34542 13535.69611 11349.59505 1.463485346 1.657014945 0.999046705 0.850496947 1.096142004 1.388523595 1.261276689 1.040596195 1.192614895 1 13.4703532 -4.760220991 24.99996468 1.111540217 1.560250245 0.599089015 0.149315344 22.63306751 464353.0761 0.042533603 0.10051752 1.74E-05 4.760220991 0.448710028 DIVEDEDDDFLKGEVPQNDTVIGITPS(ph)SFDTHFR ddPTM_HeLa_A486_30min_R1 1 DIVEDEDDDFLKGEVPQNDTVIGITPSSFDTHFR 34 1 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 1 0 DIVEDEDDDFLKGEVPQNDTVIGIT(0.004)PS(0.547)S(0.446)FDT(0.004)HFR 89.129 8.43E-05 72260000 42239 39889 22599 26717 42699 48473 56731 55031 30651 52506 TRUE FALSE FALSE 39278.26422 36728.05037 31349.93802 62198.5262 37343.29327 42492.8941 42536.30376 42501.64262 33307.85336 39358.15584 0.997970138 0.933175084 0.796529648 1.580321152 0.948806987 1.079646472 1.080749411 1.079868752 0.846275763 1 15.264375 -10.12535409 13.41333342 0.999985664 1.044974345 0.002139058 0.203827957 0 0 0.195145987 0.047329854 7.49E-11 10.12535409 0.044988681 DIVLVAYSALGSHR ddPTM_HeLa_A485_30min_R1 1 DIVLVAYSALGSHR 14 0 P52895;B4DK69;Q04828;H0Y804 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 118.52 0.00013446 16612000 13621 12216 14942 12509 16442 13187 16949 14209 13095 20412 FALSE FALSE TRUE 16650.94446 13644.55493 20469.66759 13192.335 14804.97675 13877.45093 13327.70769 10724.22047 15723.04639 15323.66406 1.086616386 0.890423784 1.335820696 0.860912569 0.966151222 0.905622238 0.869746794 0.69984701 1.026063109 1 13.90347368 DIYDKDNYELDEDT(ph)D ddPTM_HeLa_A485_30min_R1 2 DIYDKDNYELDEDTD 15 1 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 0 DIYDKDNYELDEDT(1)D;DIYDKDNYELDEDT(1)D ; 119.96 0.0001759 172810000 399090 380210 323480 525090 487280 456700 685890 680530 430430 718780 TRUE FALSE FALSE 487866.1937 424672.2521 443148.7131 553774.3371 438764.6923 480612.1058 539343.9983 513628.9505 516813.3529 539601.3742 0.904123334 0.787011065 0.82125201 1.026265617 0.813127455 0.890679915 0.999523026 0.951867388 0.957768786 1 19.0415345 -6.314065204 0.441976141 0.998036178 0.829849496 0.350567385 0.065566108 1.427940917 0.589288738 0.066178617 0.09549867 4.85E-07 6.314065204 -0.168186681 DIYDKDNYELDEDT(ph)D ddPTM_HeLa_A486_30min_R1 2 DIYDKDNYELDEDTD 15 1 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 0 DIYDKDNYELDEDT(1)D;DIYDKDNYELDEDT(1)D ; 166.9 1.07E-11 236854000 563230 613920 345950 291740 602970 671380 809050 788000 517890 820900 TRUE FALSE FALSE 523750.4855 565270.7433 479911.1049 679185.4637 527339.8801 588551.9617 606617.1327 608589.6019 562781.1222 615341.2968 0.851154454 0.918629623 0.779910445 1.103754075 0.856987631 0.956464266 0.985822235 0.989027723 0.914583704 1 19.23102729 -5.240290231 24.99951347 0.967009215 0.856771332 0.407224583 0.067347075 865.1745956 1022685.103 0.017375743 0.030056735 5.75E-06 5.240290231 -0.110237884 DIYLS(ph)PDR ddPTM_HeLa_A485_30min_R1 2 DIYLSPDR 8 0 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 DIYLS(1)PDR;DIY(0.001)LS(0.999)PDR ; 103.31 0.0016698 1203170000 640030 749280 685640 737470 772550 665420 753730 633380 710570 1025150 TRUE FALSE FALSE 782402.4654 836901.7781 939286.7679 777756.1187 695632.2094 700260.3623 592689.4281 478042.5619 853174.8813 769598.9715 1.016636579 1.087451789 1.220488596 1.010599218 0.903889214 0.909902934 0.770127625 0.621158005 1.108596701 1 19.55374735 -5.706790614 2.445046758 0.855648657 1.107553705 0.357671858 0.13165135 0.283322832 3.462488767 0.042777021 0.056257122 1.96E-06 5.706790614 0.251905048 DIYLS(ph)PDR ddPTM_HeLa_A486_30min_R1 2 DIYLSPDR 8 0 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 DIYLS(1)PDR;DIYLS(1)PDR ; 109.16 0.0012657 1325800000 1166190 1381030 924730 390500 1076570 1188440 1182630 1050050 1140860 1427020 TRUE FALSE FALSE 1084446.103 1271592.153 1282810.221 909103.7348 941536.552 1041822.356 886723.4654 810976.5374 1239750.663 1069684.904 1.013799577 1.188753949 1.199241213 0.849879933 0.880199906 0.973952565 0.828957633 0.758145258 1.158986781 1 20.02875445 -5.261698059 24.9999267 0.90798423 1.139413823 0.417374556 0.114218528 20.33021222 1964888.41 0.03090222 0.049281053 5.47E-06 5.261698059 0.231429592 DIYLS(ph)PDRTGSSFGK ddPTM_HeLa_A485_30min_R1 3 DIYLSPDRTGSSFGK 15 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 DIYLS(0.999)PDRT(0.001)GSSFGK;DIYLS(0.998)PDRT(0.002)GSSFGK;DIYLS(1)PDRTGSSFGK ;; 221.85 6.41E-34 1358330000 1064720 1313150 1061370 1249290 1721570 1503210 2107520 2199430 1315950 1795920 TRUE FALSE FALSE 1301563.291 1466711.47 1454014.93 1317535.549 1550164.446 1581915.751 1657231.135 1660016.344 1580049.094 1348230.195 0.965386545 1.087879113 1.078461924 0.977233379 1.149777279 1.173327638 1.229190045 1.231255871 1.171943115 1 20.36263541 -5.889928851 5.783576014 1.177865271 1.035804882 0.444028306 0.070869268 0.18034495 8.521842262 0.021417604 0.02441792 1.29E-06 5.889928851 -0.142060389 DIYLS(ph)PDRTGSSFGK ddPTM_HeLa_A486_30min_R1 2 DIYLSPDRTGSSFGK 15 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 DIYLS(1)PDRTGSSFGK;DIYLS(1)PDRTGSSFGK ; 225.69 4.37E-34 815570000 1130190 1038150 776580 441640 1313410 1105550 1486770 1516780 916240 1387370 TRUE FALSE FALSE 1050969.517 955883.2131 1077292.574 1028160.239 1148669.871 969158.4814 1114764.421 1171442.305 995660.4209 1039963.522 1.010583059 0.919150714 1.035894578 0.988650292 1.104529002 0.931915842 1.071926464 1.126426341 0.95739937 1 19.98810149 -4.786603205 24.93737509 1.031202648 0.964866874 0.136324331 0.061962725 340.4677559 337403.4282 0.015679262 0.032660003 1.63E-05 4.786603205 -0.066335774 DK(ac)HIEEVR ddPTM_HeLa_A485_30min_R1 1 DKHIEEVR 8 1 P16949 P16949 STMN1 Stathmin 0 1 DK(1)HIEEVR 56.359 0.01761 0 5665.2 11086 13345 7226.2 12341 8887.7 9396.2 20698 13009 22140 FALSE TRUE FALSE 6925.404195 12382.41126 18281.87083 7620.949008 11112.28671 9353.046229 7388.62511 15621.78305 15619.78697 16620.90546 0.416668286 0.744990175 1.099932304 0.458515875 0.668572885 0.56272784 0.444538063 0.939887606 0.939767512 1 14.02071136 -7.355684356 8.245776546 0.958200394 0.64339474 0.394120856 0.187958391 0.378984827 30.02032708 0.107738843 0.051452655 4.41E-08 7.355684356 -0.314805654 DK(ac)HIEEVR ddPTM_HeLa_A486_30min_R1 1 DKHIEEVR 8 1 P16949 P16949 STMN1 Stathmin 0 1 DK(1)HIEEVR 97.456 0.0017292 0 7175 8901.1 10162 1786.1 10454 7902 8174.6 8628 8873.5 9385 FALSE TRUE FALSE 6672.069552 8195.744419 14096.99855 4158.131064 9142.76184 6927.131582 6129.228618 6663.592748 9642.662125 7034.934914 0.948419514 1.165006431 2.003856286 0.591068875 1.299622804 0.984676001 0.87125591 0.947214556 1.370682493 1 12.78032136 -5.290277949 24.99390391 1.01234721 1.351685957 0.210126813 0.321912056 1139.859108 987894.2632 0.08965734 0.133008193 5.13E-06 5.290277949 0.339338747 DK(ac)PHVNVGTIGHVDHGK ddPTM_HeLa_A486_30min_R1 1 DKPHVNVGTIGHVDHGK 17 1 P49411;H3BNU3 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 1 DK(1)PHVNVGTIGHVDHGK 162.15 6.73E-11 6483900 7982.7 7529.2 10040 3854.8 10286 9204.6 12132 11753 7732.9 17500 FALSE TRUE FALSE 7423.153953 6932.558771 13927.75688 8974.169211 8995.833967 8069.030038 9096.445281 9077.098466 8403.193998 13117.88609 0.565880348 0.528481397 1.061737904 0.684117025 0.685768568 0.615116641 0.693438349 0.691963507 0.64059056 1 13.67924763 -10.46486106 3.383851478 1.004790713 0.690056067 0.321431092 0.137041912 225484617.3 280684080.4 10072740.05 0.034924681 3.43E-11 10.46486106 -0.314734645 DK(ac)TLKICANHYITPMMELKPNAGSDR ddPTM_HeLa_A485_30min_R1 1 DKTLKICANHYITPMMELKPNAGSDR 26 3 P43487-2;P43487;C9JXG8;F6WQW2;C9JJ34;C9JGV6 P43487-2 RANBP1 Ran-specific GTPase-activating protein 0 1 DK(0.5)TLK(0.5)ICANHYITPMMELKPNAGSDR 41.087 0.034361 23125000 10506 8423.9 7144 10414 13545 9631.7 11877 14226 8048.6 16202 FALSE TRUE FALSE 12843.02345 9409.001827 9786.862887 10982.89045 12196.41224 10136.00092 9339.381924 10737.05119 9663.880194 12163.13958 1.055897071 0.773566871 0.804632951 0.902965092 1.002735533 0.833337549 0.767843028 0.882753267 0.794521853 1 13.57022805 DKADFCIIHYAGK ddPTM_HeLa_A485_30min_R1 1 DKADFCIIHYAGK 13 1 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 109.22 0.00094143 10937000 45817 42367 33988 47292 56475 52869 68784 71095 44884 76885 FALSE FALSE TRUE 56008.83358 47321.45211 46561.57556 49875.44221 50852.1507 55637.13909 54087.73649 53658.83978 53891.8071 57718.98446 0.970371085 0.819859402 0.806694296 0.864108104 0.881029893 0.963931358 0.937087459 0.929656685 0.933692919 1 15.8167583 -6.120922087 3.724235175 0.947395292 0.858911222 0.463018651 0.045215776 0.227163368 5.625468818 0.015550132 0.01570942 7.57E-07 6.120922087 -0.088484069 DKAIT(ph)PPLPESTVPFSNGVLK ddPTM_HeLa_A485_30min_R1 2 DKAITPPLPESTVPFSNGVLK 21 1 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 DKAIT(1)PPLPESTVPFSNGVLK;DKAIT(0.999)PPLPESTVPFSNGVLK ; 160.26 2.46E-13 928600000 575900 455970 227489 786870 445170 582200 914830 867680 397300 1416220 TRUE FALSE FALSE 704006.9682 509291.7251 311646.6477 829854.7156 400847.3117 612683.0917 719369.097 654880.1195 477034.4657 1063182.418 0.662169498 0.479025722 0.293126224 0.780538412 0.377025904 0.576272784 0.676618692 0.615962142 0.448685435 1 20.01995772 -14 0.316558538 5.199685097 0.525201279 0.47688851 0.141683579 269.9785026 2.41811525 758.2843769 0.127136144 1.00E-14 14 -4.674483818 DKAIT(ph)PPLPESTVPFSNGVLK ddPTM_HeLa_A486_30min_R1 2 DKAITPPLPESTVPFSNGVLK 21 1 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 DKAIT(1)PPLPESTVPFSNGVLK;DKAIT(1)PPLPESTVPFSNGVLK ; 134.69 8.34E-07 815830000 1723030 1354790 613950 776720 1384170 1797680 2230840 1965750 1753230 3158180 TRUE FALSE FALSE 1602254.495 1247431.506 851687.8822 1808243.413 1210554.492 1575900.519 1672660.237 1518191.637 1905201.388 2367351.172 0.676813188 0.526931332 0.359764066 0.763825593 0.511354 0.665680926 0.706553492 0.641303941 0.804781906 1 21.1748423 -8.171635323 0.399196953 1.033925718 0.538684594 0.604380939 0.105209965 1.094454256 0.424183902 0.181910891 0.083574013 6.74E-09 8.171635323 -0.495241123 DKALQLSNS(ph)PGASSAFLK ddPTM_HeLa_A485_30min_R1 1 DKALQLSNSPGASSAFLK 18 1 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 DKALQLSNS(1)PGASSAFLK 138.57 1.08E-06 485270000 311020 497180 200960 259520 476280 569220 684760 876750 342950 416430 TRUE FALSE FALSE 380205.326 555320.8761 275303.4666 273696.9205 428859.8909 599023.479 538455.432 661725.6878 411776.9193 312621.6648 1.21618355 1.776335227 0.880628241 0.875489293 1.371817565 1.916129131 1.72238681 2.116698112 1.31717333 1 18.25405824 -6.031565377 8.499667845 1.686524099 1.196854734 0.215990461 0.372327484 0.420701345 105.63122 0.121502287 0.123992975 9.30E-07 6.031565377 -0.489669365 DKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_A485_30min_R1 3 DKAPVQPQQSPAAAPGGTDEKPSGK 25 2 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK ;; 242.64 1.62E-49 15381990000 4147120 2404950 1439718 5565940 3373360 3566980 5967230 5073930 2872590 7367060 TRUE FALSE FALSE 5069632.537 2686187.982 1972329.6 5869993.208 3037496.434 3753741.557 4692282.563 3829540.712 3449092.464 5530587.523 0.916653523 0.485696677 0.356622075 1.06136883 0.549217677 0.678723832 0.848423887 0.692429276 0.623639433 1 22.39900132 -14 0.254614833 2.943459205 0.659380226 0.173222403 0.198783626 333.3899194 3.296953535 338.2542184 0.27592166 1.00E-14 14 -2.284078978 DKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_A486_30min_R1 5 DKAPVQPQQSPAAAPGGTDEKPSGK 25 2 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK ;;;; 226.65 1.73E-38 15674450000 6044220 5262060 1650293 2868540 3965570 6293780 8064110 7440460 3726620 8614460 TRUE FALSE FALSE 5620551.39 4845075.202 2289330.646 6678106.088 3468171.233 5517317.414 6046384.385 5746429.682 4049646.422 6457343.145 0.870412376 0.750320231 0.35453136 1.034187891 0.537089505 0.854425309 0.936357918 0.889906197 0.627138179 1 22.62250926 -6.466355873 24.99300139 0.860064382 0.708508825 0.135694042 0.19216146 601.8287608 266113.4078 0.065829543 0.05805601 3.42E-07 6.466355873 -0.151555557 DKAS(ph)PEPEKDFSEK ddPTM_HeLa_A485_30min_R1 5 DKASPEPEKDFSEK 14 2 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 DKAS(1)PEPEKDFSEK;DKAS(1)PEPEKDFSEK;DKAS(0.997)PEPEKDFS(0.003)EK;DKAS(0.902)PEPEKDFS(0.098)EK;DKAS(1)PEPEKDFSEK ;;;; 112.56 0.00010314 2731220000 3329996 1671996 950693 6773700 2696445 2805074 5823920 4044100 1860276 9286240 TRUE FALSE FALSE 4070742.122 1867521.388 1302393.902 7143730.079 2427977.468 2951943.337 4579591.915 3052278.134 2233616.33 6971351.269 0.583924402 0.267885137 0.186820869 1.024726743 0.348279318 0.42343919 0.656915961 0.437831636 0.320399338 1 22.73300689 -10.28743323 3.520941467 1.001613648 0.47342843 0.326504179 0.227386249 163893487 252325365.1 2842592.169 0.058343654 5.16E-11 10.28743323 -0.528185217 DKAS(ph)PEPEKDFSEK ddPTM_HeLa_A486_30min_R1 2 DKASPEPEKDFSEK 14 2 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 DKAS(0.997)PEPEKDFS(0.003)EK;DKAS(0.999)PEPEKDFS(0.001)EK ; 121.44 2.75E-05 1835580000 3029400 2301460 613600 2199960 1633950 3667300 5530800 4596100 1922550 7015100 TRUE FALSE FALSE 2817054.704 2119083.928 851202.3528 5121618.06 1429004.755 3214865.812 4146935.341 3549668.362 2089198.182 5258473.299 0.535717221 0.402984632 0.161872525 0.97397434 0.271752783 0.611368667 0.788619644 0.675037822 0.397301282 1 22.32621257 -14 0.107034294 2.428193901 0.268965141 0.282824329 0.227495728 224.5392664 1.606461913 71.14478021 3.074585682 1.00E-14 14 -2.15922876 DKDDQEWES(ph)PSPPKPTVFISGVIAR ddPTM_HeLa_A486_30min_R1 2 DKDDQEWESPSPPKPTVFISGVIAR 25 2 P51397 P51397 DAP Death-associated protein 1 1 0 DKDDQEWES(0.781)PS(0.219)PPKPTVFISGVIAR;DKDDQEWES(0.997)PS(0.003)PPKPTVFISGVIAR ; 81.532 0.0026294 366360000 416530 332960 144613 234745 261317 427480 543380 461500 252762 640800 TRUE FALSE FALSE 387333.398 306575.037 200611.0265 546498.2234 228540.1852 374741.8639 407420.5767 356426.5245 274671.6137 480339.5091 0.806374222 0.638246555 0.417644234 1.137733235 0.475788855 0.780160401 0.848192932 0.742030413 0.571828068 1 18.87369495 -11.13964518 2.378142542 1.613483551 0.714523337 0.1624609 0.195393726 23833243.46 4930294.635 79098626.48 0.046394599 7.25E-12 11.13964518 -0.898960214 DKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_HeLa_A485_30min_R1 4 DKDDQEWESPSPPKPTVFISGVIAR 25 2 P51397 P51397 DAP Death-associated protein 1 1 0 DKDDQEWES(0.003)PS(0.997)PPKPTVFISGVIAR;DKDDQEWESPS(0.999)PPKPTVFISGVIAR;DKDDQEWES(0.028)PS(0.972)PPKPTVFISGVIAR;DKDDQEWES(0.011)PS(0.987)PPKPT(0.002)VFISGVIAR ;;; 252 1.18E-50 43426980000 1944136 1209428 717243 4380450 1739517 1706309 3086959 2363005 1233952 5312310 TRUE FALSE FALSE 2376602.346 1350860.084 982581.0327 4619742.892 1566324.58 1795648.701 2427404.992 1783474.319 1481594.848 3988048.883 0.595931097 0.338727063 0.246381391 1.158396757 0.392754609 0.450257445 0.608669819 0.447204729 0.371508698 1 21.92725166 -11.03487566 3.294552095 1.633350243 0.513879019 0.270732069 0.240164056 353789197.3 86231829.4 1695424999 0.057935403 9.23E-12 11.03487566 -1.119471225 DKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_HeLa_A486_30min_R1 5 DKDDQEWESPSPPKPTVFISGVIAR 25 2 P51397 P51397 DAP Death-associated protein 1 1 0 DKDDQEWES(0.017)PS(0.983)PPKPTVFISGVIAR;DKDDQEWES(0.001)PS(0.999)PPKPTVFISGVIAR;DKDDQEWES(0.043)PS(0.957)PPKPTVFISGVIAR;DKDDQEWES(0.001)PS(0.999)PPKPTVFISGVIAR;DKDDQEWES(0.009)PS(0.991)PPKPTVFISGVIAR ;;;; 224.07 1.47E-38 60783230000 9655838 7945553 2186278 7310573 4926116 11334170 15141930 11906080 5402730 21022100 TRUE FALSE FALSE 8979013.619 7315918.443 3032863.392 17019383.4 4308236.597 9935875.343 11353258.96 9195325.492 5871042.986 15758029.33 0.569805617 0.464266076 0.192464637 1.080045166 0.273399453 0.630527786 0.720474542 0.583532706 0.372574696 1 23.90958379 -11.31902786 2.258373931 3.379278563 0.547234779 0.250829498 0.23683354 11334041.62 1627695.595 137447325.6 0.05720859 4.80E-12 11.31902786 -2.832043784 DKDS(ph)GSSS(ph)PLPK ddPTM_HeLa_A486_30min_R1 1 DKDSGSSSPLPK 12 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 DKDS(0.947)GS(0.046)S(0.017)S(0.99)PLPK 88.115 0.0026288 253670000 706020 569390 175700 375070 374960 767180 960850 781340 453870 1505800 TRUE FALSE FALSE 656531.6439 524269.4627 243735.7454 873181.915 327929.0204 672533.1317 720435.1672 603445.9385 493211.817 1128737.879 0.581651113 0.464474058 0.215936534 0.773591399 0.290527169 0.595827556 0.638266138 0.534620083 0.436958683 1 20.10627906 -14 0.296718174 5.030582842 0.47674207 0.475555748 0.155748429 224.2948065 2.092823788 561.3772184 0.155502241 1.00E-14 14 -4.553840772 DKDSGS(ph)S(ph)SPLPK ddPTM_HeLa_A485_30min_R1 1 DKDSGSSSPLPK 12 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 DKDS(0.439)GS(0.566)S(0.676)S(0.319)PLPK 82.59 0.0051132 259620000 599070 388940 242350 1160600 498870 463850 781720 675840 323550 1442800 TRUE FALSE FALSE 732331.0547 434423.1497 332005.35 1224000.639 449200.7512 488136.4688 614699.1359 510089.1803 388483.5172 1083136.513 0.676120735 0.401078853 0.306522166 1.130052052 0.414722194 0.450669387 0.567517694 0.470937111 0.358665332 1 20.04678365 -10.17905402 4.68894805 1.00005963 0.53148106 0.283152529 0.224011551 0.000154249 2.70E-05 0.215567762 0.052275495 6.62E-11 10.17905402 -0.468578571 DKDSGSSS(ph)PLPK ddPTM_HeLa_A485_30min_R1 1 DKDSGSSSPLPK 12 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DKDS(0.01)GS(0.01)S(0.092)S(0.887)PLPK 137.62 0.00056115 0 197360 147760 71899 337670 172280 165870 275680 249220 138680 421060 TRUE FALSE FALSE 241262.0511 165039.2467 98497.43207 356116.0571 155127.1983 174554.6967 216778.7159 188098.4042 166511.804 316097.491 0.763252028 0.522115016 0.311604599 1.126601973 0.490757449 0.552217913 0.685797015 0.595064528 0.52677357 1 18.27001006 -11.05540554 2.447251911 1.522285448 0.617844434 0.23827325 0.204159959 12055706.39 4121978.6 35210876.51 0.052166717 8.80E-12 11.05540554 -0.904441014 DKDSGSSS(ph)PLPK ddPTM_HeLa_A486_30min_R1 1 DKDSGSSSPLPK 12 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DKDS(0.001)GS(0.01)S(0.11)S(0.878)PLPK 89.541 0.0010828 1338400000 1566300 1302500 447890 699370 912560 1774800 2065200 1716700 1043300 2545600 TRUE FALSE FALSE 1456510.458 1199285.156 621325.0029 1628168.704 798098.2155 1555843.221 1548465.117 1325844.885 1133734.084 1908165.191 0.763304176 0.628501747 0.325613844 0.853264021 0.418254258 0.815360865 0.811494269 0.6948271 0.594148813 1 20.86375464 -6.298009447 24.94514624 0.765863424 0.59856621 0.223186029 0.171407503 981.5160856 669507.9059 0.058611226 0.051691683 5.03E-07 6.298009447 -0.167297214 DKDVTLS(ph)PVK ddPTM_HeLa_A485_30min_R1 4 DKDVTLSPVK 10 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 DKDVT(0.006)LS(0.994)PVK;DKDVTLS(1)PVK;DKDVT(0.001)LS(0.999)PVK;DKDVT(0.001)LS(0.999)PVK ;;; 129.93 4.04E-05 4729696000 3731950 2065690 1366259 6550510 2781200 2421500 4086650 2421030 2403850 7499770 TRUE FALSE FALSE 4562109.402 2307254.476 1871695.059 6908347.775 2504293.963 2548285.996 3213503.843 1827268.596 2886280.646 5630215.362 0.81029039 0.409798618 0.33243756 1.227013059 0.444795412 0.452608974 0.570760377 0.324546839 0.512641251 1 22.42475868 -10.01479847 5.039024161 1.000004559 0.559312891 0.203720029 0.257791489 346266734.4 50.90493117 19215.6754 0.06247902 9.66E-11 10.01479847 -0.440691669 DKDVTLS(ph)PVK ddPTM_HeLa_A486_30min_R1 4 DKDVTLSPVK 10 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 DKDVTLS(1)PVK;DKDVTLS(1)PVK;DKDVT(0.292)LS(0.708)PVK;DKDVTLS(1)PVK ;;; 155.28 1.03E-06 5103158000 7307380 6911940 2194584 3290380 4012710 8203140 9423450 7946570 5403280 10781070 TRUE FALSE FALSE 6795170.397 6364212.702 3044385.698 7660170.927 3509398.495 7191119.99 7065603.139 6137309.483 5871640.661 8081419.899 0.840838675 0.787511697 0.376714208 0.947874386 0.434255185 0.889833727 0.874302193 0.75943455 0.726560522 1 22.94617736 DKDVTLS(ph)PVKAGPATTTSSETR ddPTM_HeLa_A485_30min_R1 2 DKDVTLSPVKAGPATTTSSETR 22 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 DKDVT(0.029)LS(0.971)PVKAGPATTTSSETR;DKDVT(0.012)LS(0.988)PVKAGPATTTSSETR ; 126.88 1.07E-06 844420000 438550 544830 287052 515590 757430 794300 1252330 1510940 456570 797030 TRUE FALSE FALSE 536103.9345 608543.1291 393244.48 543755.3762 682017.6097 835888.3198 984759.4649 1140379.596 548199.4111 598345.0893 0.89597783 1.017043743 0.657220201 0.908765503 1.139839905 1.397000385 1.645805209 1.905889455 0.916192714 1 19.19061826 -6.024997699 2.331810686 1.449070092 0.862589215 0.400324153 0.283332056 0.270184767 2.937546126 0.100319491 0.10780089 9.44E-07 6.024997699 -0.586480876 DKDVTLS(ph)PVKAGPATTTSSETR ddPTM_HeLa_A486_30min_R1 1 DKDVTLSPVKAGPATTTSSETR 22 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 DKDVT(0.019)LS(0.981)PVKAGPATTTSSETR 101.74 0.00020898 226870000 232110 145690 67970 128170 204700 168980 330790 331430 107240 349790 TRUE FALSE FALSE 215840.2876 134144.9938 94289.8043 298386.2374 179024.6172 148132.9657 248022.8433 255970.6241 116535.6495 262200.3072 0.823188538 0.511612649 0.359609816 1.138008725 0.682778061 0.564961068 0.945928881 0.976240748 0.444452757 1 18.00030985 -13.9999997 0.041815352 2.165465074 0.053813583 0.095646247 0.242274327 1796.464949 5.58932854 260.9295713 74.20557299 1.00E-14 13.9999997 -2.111651491 DKEADEEGGENGPADQGFQPQEEEEREDS(ph)DTEEQVPEALER ddPTM_HeLa_A486_30min_R1 1 DKEADEEGGENGPADQGFQPQEEEEREDSDTEEQVPEALER 41 2 Q9NU22 Q9NU22 MDN1 Midasin 1 0 DKEADEEGGENGPADQGFQPQEEEEREDS(1)DTEEQVPEALER 379.34 9.41E-174 1051000000 238190 185230 84795 97716 144550 198290 243430 196900 129370 290600 TRUE FALSE FALSE 221494.111 170551.7002 117629.8949 227487.7863 126419.1911 173826.9959 182521.2393 152070.1683 140583.8958 217831.8685 1.016812244 0.782951096 0.540003149 1.044327388 0.58035214 0.797986984 0.837899617 0.698107992 0.645378001 1 17.73285551 -4.272830932 5.320372781 0.757895474 1.025613815 0.181609903 0.156232772 0.221405505 22.09656391 0.036372707 0.212037771 5.34E-05 4.272830932 0.267718341 DKEDPQEMPHS(ph)PLGSMPEIR ddPTM_HeLa_A485_30min_R1 4 DKEDPQEMPHSPLGSMPEIR 20 1 G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6 G5E9C0 SP110 Sp110 nuclear body protein 1 0 DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR ;;; 286.44 2.84E-73 2377320000 2376730 2165170 1647951 3048270 2496430 2508610 3599630 3262240 2141030 4025550 TRUE FALSE FALSE 2905425.389 2418367.797 2257596.652 3214789.271 2247876.664 2639956.941 2830539.644 2462170.525 2570715.082 3022054.47 0.961407353 0.800239645 0.747040358 1.063776085 0.743824007 0.873563652 0.936627606 0.814734 0.850651472 1 21.52709823 -10.12392875 4.769049373 1.000008291 0.863394055 0.152885389 0.094646696 8.71E-06 1.60E-06 0.087495419 0.021219348 7.52E-11 10.12392875 -0.136614236 DKEDPQEMPHS(ph)PLGSMPEIR ddPTM_HeLa_A486_30min_R1 6 DKEDPQEMPHSPLGSMPEIR 20 1 G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6 G5E9C0 SP110 Sp110 nuclear body protein 1 0 DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(0.998)PLGS(0.002)MPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(1)PLGSMPEIR;DKEDPQEMPHS(0.999)PLGS(0.001)MPEIR ;;;;; 274.88 1.37E-72 3460790000 3999650 3614640 1907536 1296668 3242910 4030180 4754720 4380900 3170870 5227810 TRUE FALSE FALSE 3719295.189 3328202.762 2646185.025 3018708.634 2836153.989 3532977.367 3565038.766 3383464.704 3445723.565 3918732.349 0.949106716 0.849305966 0.675265568 0.770327842 0.723742715 0.901561284 0.909742858 0.86340796 0.87929546 1 21.90195561 -6.286490291 22.92326162 0.902198399 0.788785888 0.366887739 0.076469176 335.6607462 307150.056 0.028325014 0.024996049 5.17E-07 6.286490291 -0.113412512 DKEDTQVDSEARPMKDET(ph)FGEYSDNEEK ddPTM_HeLa_A485_30min_R1 1 DKEDTQVDSEARPMKDETFGEYSDNEEK 28 3 P32004-3;P32004-2;H3BLW5 P32004-3 L1CAM Neural cell adhesion molecule L1 1 0 DKEDTQVDS(0.001)EARPMKDET(0.567)FGEYS(0.431)DNEEK 94.949 0.00073725 2319200000 14344 33107 15752 35432 40175 36414 71736 135790 19964 46594 TRUE FALSE FALSE 17534.77331 36978.57566 21579.3203 37367.56044 36175.03594 38320.58073 56409.01757 102487.2896 23970.59168 34978.9733 0.501294682 1.057165839 0.616922633 1.068286371 1.034193761 1.09553189 1.61265504 2.92996849 0.685285742 1 15.09420032 -6.679619724 3.210256764 1.725089526 0.879333308 0.227415082 0.580147832 0.302555588 6.240003455 0.235400414 0.170900327 2.09E-07 6.679619724 -0.845756218 DKEDTQVDSEARPMKDETFGEYS(ph)DNEEK ddPTM_HeLa_A485_30min_R1 2 DKEDTQVDSEARPMKDETFGEYSDNEEK 28 3 P32004-3;P32004-2;H3BLW5 P32004-3 L1CAM Neural cell adhesion molecule L1 1 0 DKEDTQVDSEARPMKDETFGEYS(1)DNEEK;DKEDTQVDSEARPMKDETFGEYS(1)DNEEK ; 234.62 5.49E-50 1651120000 980810 386739 161186 2146950 439760 616940 1276670 926540 413290 3913700 TRUE FALSE FALSE 1198987.801 431964.7619 220815.4089 2264232.442 395975.9503 649242.0244 1003899.025 699304.6122 496233.5121 2938086.616 0.408084566 0.147022474 0.075156194 0.770648636 0.134773409 0.220974433 0.341684625 0.238013613 0.168896829 1 21.4864455 -10.79701443 2.954375555 1.181540927 0.277765815 0.566086922 0.189539265 44090866.72 36131862.39 57480735.66 0.046771733 1.60E-11 10.79701443 -0.903775112 DKEDTQVDSEARPMKDETFGEYS(ph)DNEEK ddPTM_HeLa_A486_30min_R1 1 DKEDTQVDSEARPMKDETFGEYSDNEEK 28 3 P32004-3;P32004-2;H3BLW5 P32004-3 L1CAM Neural cell adhesion molecule L1 1 0 DKEDTQVDSEARPMKDETFGEYS(1)DNEEK 202.54 1.82E-28 813140000 211940 131950 52238 160020 100850 326870 329390 239480 183250 687850 TRUE FALSE FALSE 197084.1005 121493.8014 72465.95258 372534.647 88200.45261 286544.1028 246973.1381 184955.6318 199134.2575 515607.8828 0.382236399 0.235632164 0.140544695 0.722515422 0.171061102 0.555740345 0.478994108 0.35871374 0.386212593 1 18.97591479 -14 0.24038526 4.521409287 0.320095188 0.559559742 0.165892434 126.4097237 1.261787824 217.725629 0.257058259 1.00E-14 14 -4.2013141 DKEIS(ph)PSVTK ddPTM_HeLa_A486_30min_R1 1 DKEISPSVTK 10 1 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 0 DKEIS(0.786)PS(0.214)VTK 120.9 0.0030439 71692000 184300 190890 76393 133350 141490 249200 296530 267580 143220 349730 TRUE FALSE FALSE 171381.5217 175763.1812 105974.4155 310445.5391 123743.0049 218456.2377 222335.0576 206657.8752 155634.4249 262155.3316 0.653740363 0.670454345 0.404242839 1.18420456 0.472021698 0.833308391 0.848104276 0.788303156 0.593672553 1 18.00006236 -14 0.075963385 1.797171295 0.455746764 0.140737209 0.208442768 564.9031009 3.053633855 79.5502033 8.324052427 1.00E-14 14 -1.341424531 DKEIS(ph)PSVTKK ddPTM_HeLa_A485_30min_R1 3 DKEISPSVTKK 11 2 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 0 DKEIS(0.967)PS(0.031)VT(0.002)KK;DKEIS(0.989)PS(0.009)VT(0.002)KK;DKEIS(0.982)PS(0.013)VT(0.005)KK ;; 140.96 1.30E-06 1891050000 3854060 2279850 1244880 6177900 3492320 3586890 6090300 5400500 2753940 8699300 TRUE FALSE FALSE 4711382.351 2546458.625 1705412.916 6515383.034 3144612.359 3774694.014 4789057.652 4076018.907 3306630.497 6530724.609 0.72141801 0.389919768 0.26113686 0.997650862 0.481510483 0.577990076 0.733311836 0.624129657 0.506319083 1 22.63881164 -14 0.234974085 3.258596925 0.543711104 0.283569833 0.193917013 220.3148035 2.203477401 237.5579469 0.323026574 1.00E-14 14 -2.714885821 DKEIS(ph)PSVTKK ddPTM_HeLa_A486_30min_R1 1 DKEISPSVTKK 11 2 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 0 DKEIS(0.807)PS(0.187)VT(0.006)KK 74.338 0.0048255 816770000 1075000 857300 281680 591100 687880 1264400 1558700 1431700 635360 1830900 TRUE FALSE FALSE 999648.0513 789364.4258 390754.0397 1376110.673 601599.6762 1108411.183 1168696.774 1105733.164 690433.5164 1372430.723 0.728377786 0.575157939 0.284716768 1.002681337 0.438346116 0.807626327 0.851552471 0.80567503 0.503073492 1 20.3883019 -5.897239741 1.043795384 0.779188665 0.57460211 0.12901246 0.213517938 1.124382257 2.631015567 0.099332693 0.130547434 1.27E-06 5.897239741 -0.204586555 DKELTGALIASLINCYIR ddPTM_HeLa_A486_30min_R1 1 DKELTGALIASLINCYIR 18 1 O75694;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 0 68.82 0.013371 5579900 3892.1 3655.8 2129.8 1812.2 3993.5 3910.5 5576.5 4532.9 3544.4 5609.4 FALSE FALSE TRUE 3619.283889 3366.101094 2954.515598 4218.893184 3492.597992 3428.062269 4181.200718 3500.857623 3851.631446 4204.769729 0.860756741 0.800543504 0.702658121 1.003358913 0.830627648 0.81527943 0.994394696 0.832591996 0.916014834 1 12.03781108 -13.99987609 0.026841859 1.985723408 0.173263561 0.281052877 0.080803715 2349.039329 4.745505002 238.8370271 106.2361337 1.00E-14 13.99987609 -1.812459847 DKENGNNS(ph)PLPK ddPTM_HeLa_A485_30min_R1 2 DKENGNNSPLPK 12 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 DKENGNNS(1)PLPK;DKENGNNS(1)PLPK ; 119.56 7.18E-05 474980000 609190 482900 314190 955150 636890 666120 1070000 950720 439130 1231250 TRUE FALSE FALSE 744702.2138 539370.9543 430421.9555 1007327.426 573478.9953 700997.0132 841385.7589 717554.4293 527259.3631 924322.0345 0.805673982 0.583531425 0.465662334 1.089801377 0.620432029 0.75839046 0.910273398 0.776303499 0.570428209 1 19.81803605 -14 0.207052465 2.185852204 0.696979991 0.160647164 0.174902986 277.2381376 2.758690118 137.6274955 0.390188075 1.00E-14 14 -1.488872212 DKENGNNS(ph)PLPK ddPTM_HeLa_A486_30min_R1 4 DKENGNNSPLPK 12 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 DKENGNNS(1)PLPK;DKENGNNS(1)PLPK;DKENGNNS(1)PLPK;DKENGNNS(1)PLPK ;;; 179.97 4.11E-13 2278360000 3368200 2822580 1030290 1717130 2445960 3708160 4977460 4313290 2279340 6075530 TRUE FALSE FALSE 3132106.573 2598908.481 1429245.88 3997565.419 2139164.889 3250684.921 3732046.862 3331248.025 2476915.026 4554177.743 0.687743595 0.570664701 0.313831818 0.877779842 0.469714844 0.713780863 0.819477647 0.731470797 0.543877549 1 22.11875917 -14 0.135246841 2.221545668 0.498926386 0.329485458 0.158165243 163.6700483 1.373703889 54.05845425 1.065513867 1.00E-14 14 -1.722619282 DKENGSVSSSET(ph)PPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRR ddPTM_HeLa_A485_30min_R1 1 DKENGSVSSSETPPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRR 48 2 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 1 0 DKENGS(0.017)VS(0.046)S(0.176)S(0.176)ET(0.585)PPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRR 88.146 1.16E-05 419060000 32285 27410 19946 36051 46072 30568 39623 52482 25823 34317 TRUE FALSE FALSE 39466.68687 30615.36106 27324.85542 38020.37484 41484.90991 32168.49321 31157.22236 39610.70721 31005.43924 25762.40346 1.531948948 1.188373636 1.060648533 1.475808533 1.610288806 1.248660408 1.209406662 1.537539278 1.203515009 1 14.65297957 -8.006116269 24.5317015 0.999999981 1.347570805 0.299337933 0.170906322 231.350512 927926.9012 0.170810653 0.044103121 9.86E-09 8.006116269 0.347570824 DKENTGVLHAFPPCEFSQQFLDS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 DKENTGVLHAFPPCEFSQQFLDSPAK 26 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DKENTGVLHAFPPCEFSQQFLDS(1)PAK 173.03 2.46E-14 194790000 89513 75834 27210 53811 60545 91857 128890 101480 57480 144440 TRUE FALSE FALSE 83238.60095 69824.63766 37746.44071 125274.7275 52950.88154 80524.61727 96640.35874 78375.21929 62462.41268 108271.2839 0.768796656 0.644904495 0.348628365 1.157044814 0.489057483 0.743730142 0.892576086 0.723878174 0.576906549 1 16.72429113 -11.66634583 2.147832707 8.910596923 0.706952586 0.151255371 0.209556518 8068338.684 318721.515 313368559.5 0.052698353 2.16E-12 11.66634583 -8.203644337 DKEPFTFSS(ph)PASGR ddPTM_HeLa_A485_30min_R1 1 DKEPFTFSSPASGR 14 1 Q6P1X5;H0YEX2 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 1 0 DKEPFT(0.001)FS(0.474)S(0.525)PAS(0.001)GR 89.913 0.00068438 283070000 234290 258700 215630 275160 270000 248250 331610 358730 214380 349220 TRUE FALSE FALSE 286407.0022 288952.7146 295400.5101 290191.2941 243117.852 261247.9861 260758.8145 270750.905 257404.0996 262165.8809 1.092464821 1.102175133 1.126769468 1.106899544 0.927343601 0.996498802 0.994632916 1.032746535 0.981836762 1 18.00012042 -5.739648725 24.99465291 0.991152714 1.108133745 0.834693502 0.025762841 94.30075087 108165.8161 0.007800601 0.010061731 1.82E-06 5.739648725 0.116981031 DKEPFTFSS(ph)PASGR ddPTM_HeLa_A486_30min_R1 1 DKEPFTFSSPASGR 14 1 Q6P1X5;H0YEX2 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 1 0 DKEPFTFS(0.322)S(0.678)PASGR 121.01 3.38E-05 433060000 309720 315530 192370 105340 324280 308700 356810 337470 242820 371270 TRUE FALSE FALSE 288010.2274 290526.2537 266860.8158 245236.8436 283605.7786 270615.7326 267532.364 260635.4479 263867.8331 278301.5754 1.034885365 1.043926012 0.958890784 0.881191 1.019059192 0.972383042 0.961303807 0.93652164 0.948136325 1 18.08628955 -4.764050995 24.99999999 0.957246994 1.039405708 0.452721123 0.034978212 53.60719764 513184.4531 0.009144052 0.020557243 1.72E-05 4.764050995 0.082158715 DKERPVQS(ph)LKTSR ddPTM_HeLa_A486_30min_R1 1 DKERPVQSLKTSR 13 3 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8 B7Z8L1 PPHLN1 Periphilin-1 1 0 DKERPVQS(0.826)LKT(0.163)S(0.011)R 81.01 0.027475 3502100000 1425400 1187700 656420 787250 1375500 1460400 2391400 2079100 1026900 2360200 TRUE FALSE FALSE 1325486.821 1093582.326 910603.4035 1832757.785 1202971.964 1280230.696 1793046.426 1605734.316 1115912.519 1769190.558 0.749205231 0.618125799 0.514700579 1.035930119 0.67995613 0.723625101 1.013484058 0.90760959 0.630747499 1 20.75465802 -5.248434779 24.98325615 0.845780521 0.626422068 0.343632749 0.144282005 929.7450868 1786138.716 0.039093867 0.067174635 5.64E-06 5.248434779 -0.219358453 DKERQS(ph)PFHGNHAAINQCQAPVPK ddPTM_HeLa_A485_30min_R1 1 DKERQSPFHGNHAAINQCQAPVPK 24 2 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 DKERQS(1)PFHGNHAAINQCQAPVPK 55.158 0.012066 101220000 74024 70973 44010 97560 114470 108760 172150 176800 74970 127420 TRUE FALSE FALSE 90490.38342 79272.67497 60291.13041 102889.4558 103072.9649 114454.5054 135368.7462 133439.5228 90015.79133 95656.53899 0.945992656 0.828721965 0.6302876 1.075613407 1.077531823 1.196515227 1.415154129 1.394985896 0.941031238 1 16.54557597 -5.609081842 2.125337037 1.215315507 0.807564136 0.484112709 0.164657721 0.249380723 2.289791202 0.054562464 0.078607366 2.46E-06 5.609081842 -0.407751371 DKESDKEDGRES(ph)PSYDTPSQR ddPTM_HeLa_A485_30min_R1 3 DKESDKEDGRESPSYDTPSQR 21 3 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-14;E9PFN4;Q9Y6M7-11;A0A0A0MST8;C9JRP1;Q9Y6M7-12;Q9Y6M7-10 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 DKES(0.001)DKEDGRES(0.992)PS(0.007)YDTPSQR;DKESDKEDGRES(0.993)PS(0.007)YDTPSQR;DKESDKEDGRES(1)PSYDTPSQR ;; 188.22 1.37E-18 1915780000 1412530 654460 308618 2899200 690630 1096250 2062700 1618200 708460 5364900 TRUE FALSE FALSE 1726742.425 730993.404 422788.6409 3057575.955 621868.4523 1153647.955 1621987.294 1221333.913 850641.4236 4027529.164 0.428734928 0.181499221 0.104974694 0.759169166 0.154404457 0.286440621 0.402725152 0.303246448 0.211206769 1 21.9414636 -10.48506733 3.192543489 1.015502052 0.314401886 0.571138811 0.178148403 90801462.43 112790930.3 12468336.24 0.046494462 3.27E-11 10.48506733 -0.701100166 DKESDKEDGRES(ph)PSYDTPSQR ddPTM_HeLa_A486_30min_R1 3 DKESDKEDGRESPSYDTPSQR 21 3 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-14;E9PFN4;Q9Y6M7-11;A0A0A0MST8;C9JRP1;Q9Y6M7-12;Q9Y6M7-10 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 DKESDKEDGRES(0.999)PS(0.001)YDTPSQR;DKESDKEDGRES(0.999)PS(0.001)YDTPSQR;DKESDKEDGRES(0.999)PS(0.001)YDTPSQR ;; 180.83 2.54E-18 1598010000 920380 733430 267653 580870 711030 1283400 1459820 1212940 803540 2762890 TRUE FALSE FALSE 855866.1148 675310.3357 371295.4096 1352294.716 621845.9873 1125067.157 1094557.596 936780.0403 873191.4942 2071044.361 0.413253396 0.326072366 0.179279313 0.652953042 0.300257203 0.543236629 0.528505143 0.452322537 0.421618924 1 20.98192702 -14 0.204237343 3.662431478 0.337165756 0.667048109 0.123985086 84.46845241 0.838777561 91.91166963 0.2807728 1.00E-14 14 -3.325265722 DKETGTDGILAGS(ph)QEHDPGQGSSSPEQAGSPTEGEGVSTWESFKR ddPTM_HeLa_A485_30min_R1 1 DKETGTDGILAGSQEHDPGQGSSSPEQAGSPTEGEGVSTWESFKR 45 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 DKETGTDGILAGS(1)QEHDPGQGSSSPEQAGSPTEGEGVSTWESFKR 123.41 1.34E-08 211120000 52926 37020 18146 69864 39040 45224 67801 55579 34630 97428 TRUE FALSE FALSE 64699.20611 41349.16697 24858.96052 73680.49341 35153.04052 47591.85871 53314.76247 41948.16311 41579.92335 73140.99263 0.884582008 0.565335053 0.339877265 1.007376175 0.480620228 0.65068653 0.72893135 0.573524662 0.568490006 1 16.15839259 -10.05613774 4.365004666 1.00002569 0.639547679 0.254136463 0.182600432 128473595 154054567.1 44119.45818 0.043674296 8.79E-11 10.05613774 -0.36047801 DKEVS(ph)DDEAEEK ddPTM_HeLa_A485_30min_R1 4 DKEVSDDEAEEK 12 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK ;;; 266.45 1.18E-32 4584390000 3609440 2278616 807007 6123530 1611968 2100168 4142980 3150280 1195848 6344230 TRUE FALSE FALSE 4412347.476 2545080.32 1105552.472 6458042.938 1451474.806 2210129.549 3257798.478 2377668.891 1435843.725 4762730.218 0.926432377 0.534374236 0.232125781 1.355953968 0.304756881 0.464046765 0.684019109 0.499223929 0.301474923 1 22.1833574 -10.55755397 6.029783865 1.000885853 0.587697781 0.12866906 0.320719132 0.003710128 0.000272237 0.30165414 0.073016113 2.77E-11 10.55755397 -0.413188072 DKEVS(ph)DDEAEEK ddPTM_HeLa_A486_30min_R1 4 DKEVSDDEAEEK 12 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK ;;; 272.95 1.76E-39 5136900000 6318429 4339556 743934 3789045 1782183 5490083 7687610 5432356 2892603 15206210 TRUE FALSE FALSE 5875539.756 3995673.778 1032005.168 8821088.248 1558644.99 4812772.379 5764088.667 4195527.126 3143336.157 11398476.04 0.515467132 0.350544561 0.090538872 0.773883124 0.136741524 0.42222946 0.505689414 0.3680779 0.275768107 1 23.44233762 -10.68973646 2.888383501 1.078568352 0.381309562 0.498354578 0.18597815 104610972.8 97647577.38 60150855.28 0.045125176 2.04E-11 10.68973646 -0.69725879 DKEVS(ph)DDEAEEKEDK ddPTM_HeLa_A485_30min_R1 2 DKEVSDDEAEEKEDK 15 2 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEKEDK;DKEVS(1)DDEAEEKEDK ; 125.28 1.92E-05 2387880000 300820 207880 60178 548050 101530 216770 444800 347820 109720 636010 TRUE FALSE FALSE 367736.3712 232189.7577 82440.34642 577988.5838 91421.31671 228119.742 349764.8463 262516.5996 131739.7976 477464.4119 0.770185928 0.486297516 0.172662809 1.210537517 0.191472525 0.477773288 0.732546421 0.549813961 0.275915428 1 18.86503368 -10.31070647 4.053857549 1.000733608 0.541844712 0.178612909 0.295412491 194997994 1563.533047 1339142.934 0.068349324 4.89E-11 10.31070647 -0.458888896 DKEVS(ph)DDEAEEKEDK ddPTM_HeLa_A486_30min_R1 2 DKEVSDDEAEEKEDK 15 2 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEKEDK;DKEVS(1)DDEAEEKEDK ; 160.57 5.25E-12 2720030000 840840 424900 74233 570530 127129 700890 867310 706100 282420 3301900 TRUE FALSE FALSE 781901.4581 391229.3765 102978.0056 1328222.673 111183.2954 614421.3179 650299.8645 545336.4441 306900.393 2475082.748 0.315909219 0.158067191 0.041605884 0.536637684 0.044921042 0.248242738 0.262738636 0.220330591 0.123996013 1 21.23904533 -10.79876397 2.835189242 1.210541815 0.216761492 0.746376284 0.136940805 68599082.64 52928804.82 99451070.99 0.032534713 1.59E-11 10.79876397 -0.993780323 DKEVS(ph)DDEAEEKEDKEEEK ddPTM_HeLa_A485_30min_R1 4 DKEVSDDEAEEKEDKEEEK 19 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK ;;; 218.29 1.32E-34 18668160000 7087120 3840100 1252912 24659980 3498640 3993350 11155770 6596690 1481210 24928800 TRUE FALSE FALSE 8663625.394 4289166.291 1716416.287 26007092.27 3150303.117 4202435.631 8772248.605 4978841.434 1778475.261 18714508.94 0.462936293 0.229189358 0.091715807 1.389675377 0.1683348 0.224554951 0.468740517 0.266041789 0.095031896 1 24.15765386 -10.32090397 4.767061591 1.000357183 0.383144559 0.211017478 0.361032749 0.001373579 0.000195674 0.35034502 0.084923306 4.78E-11 10.32090397 -0.617212624 DKEVS(ph)DDEAEEKEDKEEEK ddPTM_HeLa_A486_30min_R1 3 DKEVSDDEAEEKEDKEEEK 19 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK;DKEVS(1)DDEAEEKEDKEEEK ;; 186.28 3.11E-18 3534800000 1307320 841506 170147 2319400 261060 1584288 2522190 1799070 523685 8997580 TRUE FALSE FALSE 1215683.619 774821.9998 236032.4751 5399680.416 228315.4205 1388834.654 1891111.385 1389461.034 569078.4375 6744527.404 0.180247413 0.114881585 0.034996147 0.800601746 0.033851952 0.205920233 0.280391979 0.206013105 0.084376325 1 22.68528592 -11.01328102 2.812373884 1.849477128 0.220602889 0.556465806 0.210021633 122198937.8 78948851.77 670137468.4 0.052208186 9.70E-12 11.01328102 -1.62887424 DKFS(ph)PFPVQDRPESSLVFK ddPTM_HeLa_A485_30min_R1 1 DKFSPFPVQDRPESSLVFK 19 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DKFS(1)PFPVQDRPESSLVFK 169.91 9.26E-13 1369200000 356020 239970 186450 513600 362350 291430 482590 407820 254160 674480 TRUE FALSE FALSE 435215.4207 268032.404 255425.6138 541656.6675 326273.1617 306688.8242 379480.7041 307801.5056 305167.5807 506344.5489 0.859524254 0.529347861 0.50445021 1.069739308 0.644369851 0.605691964 0.749451544 0.607889443 0.6026876 1 18.94975989 -10.42993415 3.393317714 1.003665659 0.68324695 0.254297028 0.161301287 155553761.9 200838411.4 5446190.128 0.039383212 3.72E-11 10.42993415 -0.32041871 DKFS(ph)PFPVQDRPESSLVFK ddPTM_HeLa_A486_30min_R1 2 DKFSPFPVQDRPESSLVFK 19 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DKFS(1)PFPVQDRPESSLVFK;DKFS(1)PFPVQDRPESSLVFK ; 188.29 1.84E-18 2532400000 964140 857690 342260 441660 746600 1058770 1337820 1242590 750160 1384240 TRUE FALSE FALSE 896558.7648 789723.5207 474792.238 1028206.8 652954.4662 928149.7222 1003083.286 959679.3825 815184.4728 1037617.294 0.864055341 0.761093252 0.457579341 0.99093067 0.629282559 0.894501014 0.966717972 0.924887613 0.785631155 1 19.984843 -6.393391239 7.197873737 0.915324717 0.740271308 0.277361372 0.140572633 0.360340442 19.46978803 0.048730957 0.042858711 4.04E-07 6.393391239 -0.175053409 DKGQS(ph)FNDKR ddPTM_HeLa_A486_30min_R1 1 DKGQSFNDKR 10 2 A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25 A0A590UJ08 DLG1 Disks large homolog 1 1 0 DKGQS(1)FNDKR 65.219 0.014079 224570000 270000 220490 66944 189940 174070 293170 368080 431210 167990 412530 TRUE FALSE FALSE 251074.3943 203017.5694 92866.50962 442189.919 152236.5175 257001.6661 275982.4908 333032.8962 182551.5085 309229.8029 0.811934658 0.65652653 0.300315522 1.429971869 0.492308684 0.831102513 0.892483481 1.076975418 0.590342544 1 18.23831984 -5.215914759 24.99991778 0.884685662 0.596285927 0.217504224 0.269976257 713.83551 392002.8721 0.07030956 0.121779199 6.08E-06 5.215914759 -0.288399735 DKGS(ph)FNDKR ddPTM_HeLa_A485_30min_R1 2 DKGSFNDKR 9 2 A0A590UJD9;A0A0C4DFT3;A0A590UK02;A0A590UK70 A0A590UJD9 DLG1 1 0 DKGS(1)FNDKR;DKGS(1)FNDKR ; 91.914 0.0014524 341620000 838830 493720 226530 1016590 434890 677120 996810 1084140 575840 1705020 TRUE FALSE FALSE 1025424.84 551456.2592 310332.8737 1072123.738 391590.8246 712572.9562 783833.4003 818252.9651 691405.8061 1279989.893 0.801119482 0.430828605 0.242449472 0.837603284 0.305932748 0.556702018 0.61237468 0.639265177 0.540165051 1 20.28770099 -9.919305504 0.411379275 1.172156374 0.517946594 0.357238338 0.180499872 15.22919376 1.886271052 3.34637548 0.111454741 1.20E-10 9.919305504 -0.65420978 DKGS(ph)FNDKR ddPTM_HeLa_A486_30min_R1 1 DKGSFNDKR 9 2 A0A590UJD9;A0A0C4DFT3;A0A590UK02;A0A590UK70 A0A590UJD9 DLG1 1 0 DKGS(1)FNDKR 111.79 0.00038199 203580000 310780 180820 138810 145050 147860 414390 351650 300190 264490 462930 TRUE FALSE FALSE 288995.9269 166491.1647 192560.9495 337683.7304 129314.0201 363266.775 263663.4506 231843.2901 287416.2062 347009.3148 0.832818932 0.479788748 0.554915794 0.973125838 0.372652879 1.046850213 0.759816637 0.668118348 0.828266545 1 18.40461486 -6.273272224 24.99978498 0.833568115 0.647096485 0.242808322 0.189374316 1307.650191 2762724.252 0.064924972 0.057706762 5.33E-07 6.273272224 -0.18647163 DKHIEEVR ddPTM_HeLa_A485_30min_R1 2 DKHIEEVR 8 1 P16949 P16949 STMN1 Stathmin 0 0 ; ; 97.456 0.0075232 12477200 16454.5 19165.5 13686.1 19071.2 23027.1 18435.7 23428.8 24408 18371 23517 FALSE FALSE TRUE 20114.74676 21406.73851 18749.15792 20113.01137 20734.44107 19400.96474 18423.04548 18421.89973 22057.89119 17654.6447 1.139345883 1.212527291 1.061995766 1.139247587 1.174446806 1.098915615 1.043524002 1.043459104 1.249410088 1 14.10776017 -6.431046236 6.518941643 1.085483638 1.143965295 0.147766172 0.070786806 0.51656451 30.77012412 0.024784334 0.021724666 3.71E-07 6.431046236 0.058481657 DKHIEEVR ddPTM_HeLa_A486_30min_R1 1 DKHIEEVR 8 1 P16949 P16949 STMN1 Stathmin 0 0 93.058 0.011731 186670000 174190 171940 95482 48015 169190 148970 168430 160910 143070 183280 FALSE FALSE TRUE 161980.1805 158314.8482 132455.1875 111781.3465 147968.6126 130591.596 126287.0325 124274.3056 155471.4228 137385.495 1.179019521 1.152340341 0.964113333 0.813632811 1.077032277 0.950548644 0.919216636 0.904566422 1.131643648 1 17.06787017 -4.747109258 5.765200225 0.961969657 1.169531965 0.461953622 0.084201374 0.129069953 13.98483354 0.02141189 0.053854236 1.79E-05 4.747109258 0.207562307 DKHIEEVRK ddPTM_HeLa_A485_30min_R1 5 DKHIEEVRK 9 2 P16949 P16949 STMN1 Stathmin 0 0 ;;;; ;;;; 114.83 0.00056495 1455078000 1623736.5 1703662.1 989196.9 1796172.2 1877315.6 2131577.1 2915281.6 3417436.5 1553408.2 2506381.1 FALSE FALSE TRUE 1984931.083 1902890.563 1355141.997 1894292.539 1690403.467 2243183.181 2292407.87 2579304.84 1865162.977 1881586.418 1.054924219 1.011322437 0.720212468 1.006752877 0.898392681 1.192176537 1.218337807 1.370813913 0.991271492 1 20.84351812 -6.265008147 24.83117064 1.181684447 0.934061208 0.386673718 0.133923343 266.7823877 1856239.506 0.045655554 0.041846184 5.43E-07 6.265008147 -0.247623239 DKHIEEVRK ddPTM_HeLa_A486_30min_R1 4 DKHIEEVRK 9 2 P16949 P16949 STMN1 Stathmin 0 0 ;;; ;;; 127.42 0.00021805 1107692000 2126679 1708367 994544 859717 1906610 2075232 2472400 2284470 1526803 2773940 FALSE FALSE TRUE 1977609.784 1572989.777 1379658.072 2001464.624 1667465.195 1819210.975 1853779.37 1764346.051 1659147.513 2079327.369 0.951081496 0.756489719 0.663511717 0.962553879 0.801925286 0.874903588 0.891528384 0.848517688 0.797925107 1 20.98768548 -5.275893928 24.97662907 0.872872357 0.786973835 0.178457336 0.088827713 1384.195312 2391806.755 0.024561274 0.036622899 5.30E-06 5.275893928 -0.085898522 DKKAEGAATEEEGT(ph)PK ddPTM_HeLa_A486_30min_R1 1 DKKAEGAATEEEGTPK 16 2 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 DKKAEGAATEEEGT(1)PK 146.89 6.76E-08 118900000 147010 68864 32155 155630 114850 139270 244170 227940 75872 448540 TRUE FALSE FALSE 136705.3582 63406.96584 44606.27714 362314.5051 100444.4421 122088.2834 183076.0834 176043.0379 82448.64605 336222.6645 0.40659174 0.188586233 0.132668859 1.077602861 0.298743817 0.363117351 0.544508455 0.523590633 0.24522037 1 18.35905745 -10.5063795 2.816607501 1.023313952 0.425609091 0.319625896 0.253718135 35845897.01 38251607.8 6451305.609 0.066952853 3.12E-11 10.5063795 -0.597704861 DKKDEEEDMS(ph)LD ddPTM_HeLa_A486_30min_R1 2 DKKDEEEDMSLD 12 2 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 DKKDEEEDMS(1)LD;DKKDEEEDMS(1)LD ; 120.3 8.91E-05 598570000 1477920 1289880 481860 1585960 1178180 2176300 3258800 2948200 1028000 3710800 TRUE FALSE FALSE 1374325.44 1187665.211 668449.0967 3692195.03 1030401.678 1907810.233 2443413.772 2276959.219 1117107.868 2781591.527 0.494078813 0.426973263 0.240311739 1.327367802 0.370436014 0.685870019 0.878422927 0.818581448 0.401607446 1 21.40747915 DKKS(ph)PLIESTANMDNNQSQK ddPTM_HeLa_A486_30min_R1 2 DKKSPLIESTANMDNNQSQK 20 2 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 DKKS(1)PLIESTANMDNNQSQK;DKKS(0.705)PLIES(0.148)T(0.148)ANMDNNQSQK ; 184.29 2.41E-19 1111900000 277292 192956 88474 230220 209992 314296 517807 477273 165751 499833 TRUE FALSE FALSE 257855.2627 177665.4638 122733.5022 535963.7947 183652.8453 275521.355 388246.2118 368608.3567 180118.4301 374671.5634 0.688216795 0.47418988 0.327576241 1.430489653 0.490170227 0.735367671 1.036230794 0.983817275 0.480736858 1 18.51526696 DKLESEMEDAYHEHQANLLR ddPTM_HeLa_A485_30min_R1 3 DKLESEMEDAYHEHQANLLR 20 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ;; ;; 294.52 7.93E-87 1335700000 630260 601840 434790 740260 751990 664320 940190 998870 551440 991280 FALSE FALSE TRUE 770459.1626 672219.9527 595636.9141 780698.5294 677119.2352 699102.768 739310.7259 753895.5663 662108.9499 744172.1392 1.035323848 0.903312443 0.800402061 1.049083254 0.909895976 0.939436901 0.993467354 1.013066099 0.889725529 1 19.50527685 -6.672988085 7.265041826 0.975030728 0.934931155 0.049462183 0.072477241 0.724512411 50.54277594 0.027861385 0.02146821 2.12E-07 6.672988085 -0.040099573 DKLESEMEDAYHEHQANLLR ddPTM_HeLa_A486_30min_R1 2 DKLESEMEDAYHEHQANLLR 20 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 288.25 1.71E-73 802360000 761040 729080 414250 319130 759750 822700 932220 893310 563880 997330 FALSE FALSE TRUE 707695.026 671305.0455 574658.694 742950.7679 664455.0706 721203.6386 698968.696 689922.8138 612757.5724 747592.0765 0.946632593 0.897956341 0.768679487 0.993791656 0.888793624 0.96470209 0.934960011 0.922859987 0.819641609 1 19.51189175 -5.293533902 24.99965069 0.928565097 0.873776014 0.157876339 0.064125607 1303.980419 1015717.128 0.017839825 0.026463409 5.09E-06 5.293533902 -0.054789083 DKLNNLVLFDK ddPTM_HeLa_A485_30min_R1 1 DKLNNLVLFDK 11 1 P62851 P62851 RPS25 40S ribosomal protein S25 0 0 100.22 0.0017511 49850000 175760 160730 113580 197930 211030 201040 276440 287680 173150 301910 FALSE FALSE TRUE 214857.2056 179525.9753 155597.9685 208742.4147 190019.1122 211566.1435 217376.3357 217126.0289 207899.6168 226649.3932 0.947971678 0.792086724 0.686513942 0.920992603 0.838383503 0.93345118 0.959086334 0.957981955 0.917274094 1 17.79010277 -6.141006622 1.388378432 0.957614724 0.817648763 0.414253779 0.069227006 0.417585775 1.634221773 0.031189614 0.031119262 7.23E-07 6.141006622 -0.139965961 DKLNNLVLFDK ddPTM_HeLa_A486_30min_R1 1 DKLNNLVLFDK 11 1 P62851 P62851 RPS25 40S ribosomal protein S25 0 0 134.61 3.44E-05 63039000 275680 234510 123960 132790 298500 262640 321470 325760 193740 342080 FALSE FALSE TRUE 256356.2556 215926.5735 171960.6318 309141.8308 261059.3466 230238.1471 241034.8058 251591.5593 210533.5392 256420.9414 0.999747736 0.842078546 0.670618518 1.205602901 1.018089026 0.897891357 0.939996572 0.981166194 0.821046589 1 17.96815456 -5.244636564 24.99915151 0.976188397 0.837941333 0.23345502 0.118609906 1323.412763 1968965.083 0.0329595 0.0568938 5.69E-06 5.244636564 -0.138247064 DKMEGS(ph)DFESSGGR ddPTM_HeLa_A485_30min_R1 1 DKMEGSDFESSGGR 14 1 Q8WYH8;E9PEN0;A0A1B0GW41;Q8WYH8-2 Q8WYH8 ING5 Inhibitor of growth protein 5 1 0 DKMEGS(1)DFESSGGR 156.15 1.08E-08 581790000 311230 240650 201620 462200 379040 343900 479430 415200 292090 641470 TRUE FALSE FALSE 380462.0398 268791.9241 276207.6281 487448.8156 341301.4467 361906.0722 376995.8639 313371.549 350709.7838 481563.3344 0.790056079 0.558165261 0.57356449 1.012221614 0.708736364 0.751523312 0.782858322 0.650737975 0.728273435 1 18.87736603 -11.61225772 1.981181122 5.463859086 0.726653444 0.310555787 0.121349857 6425749.935 255462.8554 129276008.5 0.031321883 2.44E-12 11.61225772 -4.737205642 DKMEGS(ph)DFESSGGR ddPTM_HeLa_A486_30min_R1 1 DKMEGSDFESSGGR 14 1 Q8WYH8;E9PEN0;A0A1B0GW41;Q8WYH8-2 Q8WYH8 ING5 Inhibitor of growth protein 5 1 0 DKMEGS(1)DFESSGGR 128.05 1.17E-05 545620000 473620 525410 275090 194590 477330 573620 700110 676400 385740 662820 TRUE FALSE FALSE 440421.6838 483774.5981 381612.2152 453015.354 417458.8205 502852.5965 524935.073 522398.4857 419176.2538 496845.5578 0.886435789 0.973692107 0.768070096 0.911783042 0.840218482 1.012090354 1.056535708 1.051430324 0.843675157 1 18.92243794 -6.268718473 24.79277074 0.999947547 0.877452432 0.383555409 0.073684082 533.484535 1817055.848 0.025561585 0.023006072 5.39E-07 6.268718473 -0.122495115 DKMNS(ph)PGLQTK ddPTM_HeLa_A485_30min_R1 2 DKMNSPGLQTK 11 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 DKMNS(1)PGLQTK;DKMNS(1)PGLQTK ; 119.45 0.00011072 0 504330 361320 223650 691220 516920 513540 741590 644490 356120 988100 TRUE FALSE FALSE 616516.4686 403573.2309 306387.4419 728979.5983 465453.6298 540428.1603 583143.2383 486427.817 427590.0175 741784.8546 0.831125716 0.544056984 0.413040843 0.982737237 0.627477936 0.728551085 0.786135272 0.655753233 0.576434009 1 19.50064129 -10.56289897 3.061194056 1.014618245 0.681579104 0.280805041 0.152273867 112990693.9 127624190.8 13520487.42 0.038273193 2.74E-11 10.56289897 -0.333039141 DKMNS(ph)PGLQTK ddPTM_HeLa_A486_30min_R1 1 DKMNSPGLQTK 11 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 DKMNS(1)PGLQTK 117.37 0.00013689 209650000 270280 224760 95061 122100 197390 297790 357020 327390 180070 448080 TRUE FALSE FALSE 251334.7677 206949.199 131871.165 284254.9706 172631.5056 261051.6975 267689.8198 252850.4439 195678.6126 335877.8515 0.748292174 0.616144227 0.392616436 0.8463046 0.513971091 0.777222125 0.796985626 0.752804756 0.582588616 1 18.35757714 -6.291634157 23.98603078 0.767412152 0.622613926 0.219051174 0.148329892 727.7117349 578074.4525 0.050630103 0.044658914 5.11E-07 6.291634157 -0.144798226 DKNNKEPIIEDILNLESSPTASGSSVS(ph)PGLYSK ddPTM_HeLa_A485_30min_R1 1 DKNNKEPIIEDILNLESSPTASGSSVSPGLYSK 33 2 Q9BQL6-4;Q9BQL6-2;Q9BQL6 Q9BQL6-4 FERMT1 Fermitin family homolog 1 1 0 DKNNKEPIIEDILNLESSPTAS(0.089)GS(0.032)S(0.223)VS(0.656)PGLYSK 200.3 1.98E-29 226590000 35339 31988 18076 56909 41017 38597 66049 67050 30706 75078 TRUE FALSE FALSE 43200.03863 35728.71834 24763.06461 60017.79457 36933.20346 40617.87924 51937.09158 50605.88237 36868.41255 56362.43631 0.766468617 0.633910113 0.439354049 1.064854511 0.655280465 0.720655137 0.921484148 0.897865417 0.654130924 1 15.78244635 -5.501791711 0.056104507 1.460384918 8.73E-11 0.204055635 0.163468257 184.5398565 2.6525524 26.33422507 43.08187258 3.15E-06 5.501791711 -1.460384918 DKPASSMS(ph)DDEMPVLEIPR ddPTM_HeLa_A485_30min_R1 2 DKPASSMSDDEMPVLEIPR 19 1 Q96PN7 Q96PN7 TRERF1 Transcriptional-regulating factor 1 1 0 DKPAS(0.008)S(0.009)MS(0.983)DDEMPVLEIPR;DKPAS(0.041)S(0.157)MS(0.802)DDEMPVLEIPR ; 167.51 8.13E-13 336130000 170210 178372 152286 221363 245540 216626 287664 329700 183247 317010 TRUE FALSE FALSE 208072.6273 199231.0538 208622.9285 233455.5002 221093.1755 227968.2024 226202.2364 248840.5581 220022.9921 237985.2411 0.874308954 0.837157182 0.876621288 0.980966295 0.929020533 0.957908992 0.950488506 1.045613404 0.924523685 1 17.86051258 -5.182734192 4.253243348 0.968805994 0.856230969 0.671799029 0.034410199 0.129334618 4.377022972 0.009362457 0.016754394 6.57E-06 5.182734192 -0.112575025 DKPASSMS(ph)DDEMPVLEIPR ddPTM_HeLa_A486_30min_R1 2 DKPASSMSDDEMPVLEIPR 19 1 Q96PN7 Q96PN7 TRERF1 Transcriptional-regulating factor 1 1 0 DKPASS(0.005)MS(0.994)DDEMPVLEIPR;DKPAS(0.117)S(0.117)MS(0.765)DDEMPVLEIPR ; 187.72 1.35E-18 281590000 272258 269810 145202 120061 262533 297050 332008 316174 216583 347840 TRUE FALSE FALSE 253174.1201 248429.273 201428.103 279508.0755 229603.6631 260402.9912 248936.0868 244188.0822 235356.5888 260738.5999 0.970988263 0.952790546 0.772528897 1.071985796 0.880589461 0.998712854 0.954734308 0.936524482 0.902653419 1 17.99224465 -5.273558747 24.99690154 0.958590075 0.904171353 0.146080483 0.070750295 1640.834796 3384312.642 0.019336268 0.028899799 5.33E-06 5.273558747 -0.054418722 DKPHVNVGTIGHVDHGK ddPTM_HeLa_A486_30min_R1 1 DKPHVNVGTIGHVDHGK 17 1 P49411;H3BNU3 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 193.8 9.75E-19 310010000 209090 162830 91382 66859 191740 196480 212250 203000 167250 260230 FALSE FALSE TRUE 194433.8707 149926.7578 126767.5577 155651.1309 167690.1813 172240.2953 159142.805 156781.3315 181747.3647 195066.7142 0.996755759 0.768592214 0.649867704 0.797937934 0.859655539 0.882981476 0.815837831 0.803731852 0.931719004 1 17.57360809 -7.919091102 3.417685403 0.99876141 0.816603954 0.334440519 0.083432992 0.250150552 5.729463847 0.083767177 0.022325413 1.20E-08 7.919091102 -0.182157457 DKPLKDVIIADCGK ddPTM_HeLa_A485_30min_R1 1 DKPLKDVIIADCGK 14 2 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 0 120.3 0.00012523 13809000 27986 22751 15415 31883 30398 30956 48892 47274 23783 51697 FALSE FALSE TRUE 34211.38915 25411.53154 21117.64997 33624.68756 27371.46839 32576.80829 38445.82479 35679.97738 28556.02995 38809.88931 0.881512155 0.654769493 0.544130642 0.866394833 0.705270457 0.839394517 0.990619285 0.919352722 0.735792615 1 15.2441367 -6.419851366 3.854323765 0.906193486 0.723723101 0.361615649 0.113264806 0.273050324 7.260069325 0.042650332 0.036606593 3.80E-07 6.419851366 -0.182470385 DKPLKDVIIADCGK ddPTM_HeLa_A486_30min_R1 1 DKPLKDVIIADCGK 14 2 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 0 91.032 0.0058879 3822200 16147 13199 5291.9 7338.5 11165 12973 17505 17704 9770 19145 FALSE FALSE TRUE 15015.17868 12153.06317 7341.065402 17084.39887 9764.581591 11372.52316 13125.06385 13673.18568 10616.87147 14350.96739 1.046283381 0.846846268 0.511538017 1.19047019 0.680412778 0.792456902 0.914576941 0.952771009 0.739801797 1 13.80886037 -10.66294895 2.801053977 1.016962355 0.850427764 0.055993944 0.181091259 193801399.2 181694241.8 23655151.3 0.042517936 2.17E-11 10.66294895 -0.166534591 DKPRS(ph)PFSK ddPTM_HeLa_A485_30min_R1 2 DKPRSPFSK 9 2 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 DKPRS(0.5)PFS(0.5)K;DKPRS(0.876)PFS(0.124)K ; 91.202 0.0023846 1896120000 1954720 1546970 1084160 2443500 2115100 2335200 3421700 3158000 1647520 3910200 TRUE FALSE FALSE 2389540.72 1727874.685 1485235.9 2576982.218 1904513.217 2457467.461 2690625.842 2383495.548 1978162.152 2935459.102 0.814026235 0.588621617 0.505963752 0.877880471 0.648795691 0.837166309 0.916594559 0.811966873 0.673885101 1 21.48515473 -5.845162042 1.256761827 0.837488814 0.650078288 0.267878814 0.127118918 0.619350013 2.059588296 0.052811218 0.069792045 1.43E-06 5.845162042 -0.187410526 DKPRS(ph)PFSK ddPTM_HeLa_A486_30min_R1 3 DKPRSPFSK 9 2 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 DKPRS(0.998)PFS(0.002)K;DKPRS(1)PFSK;DKPRS(1)PFSK ;; 148.78 3.55E-05 2074390000 1528680 1357090 623544 731606 1419530 1813390 2004900 1936740 1220806 2451950 TRUE FALSE FALSE 1421527.426 1249549.246 864996.9359 1703215.741 1241479.311 1589672.379 1503252.814 1495786.581 1326626.447 1837965.76 0.773424324 0.679854474 0.470627339 0.92668524 0.675463786 0.864908593 0.817889455 0.813827228 0.721790621 1 20.80967846 -5.275388264 24.99994146 0.818074322 0.645157272 0.374277067 0.111727429 855.9804448 1534132.342 0.030324061 0.045234495 5.30E-06 5.275388264 -0.17291705 DKPSVEPVEEYDYEDLKES(ph)SNSVSNHQLSGFDQAR ddPTM_HeLa_A485_30min_R1 1 DKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQAR 35 2 Q9Y450;E9PN23;G5E991;E9PMN1;E9PLR4;Q9Y450-2 Q9Y450 HBS1L HBS1-like protein 1 0 DKPSVEPVEEYDYEDLKES(0.299)S(0.299)NS(0.299)VS(0.102)NHQLSGFDQAR 83.221 8.13E-05 67767000 42048 33739 21086 25936 37774 34028 49884 47200 24952 43193 TRUE FALSE FALSE 51401.43254 37684.48256 28886.58886 27352.81801 34013.08793 35809.65346 39225.87589 35624.12599 29959.63753 32425.78001 1.585202654 1.162176594 0.890852552 0.843551581 1.048952035 1.104357504 1.209712638 1.0986359 0.923945007 1 14.98485366 -4.313542732 3.221765308 1.023741385 1.634779929 0.726737766 0.104900761 0.167902263 2.840752277 0.030221431 0.237724879 4.86E-05 4.313542732 0.611038543 DKPSVEPVEEYDYEDLKES(ph)SNSVSNHQLSGFDQAR ddPTM_HeLa_A486_30min_R1 1 DKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQAR 35 2 Q9Y450;E9PN23;G5E991;E9PMN1;E9PLR4;Q9Y450-2 Q9Y450 HBS1L HBS1-like protein 1 0 DKPSVEPVEEYDYEDLKES(0.452)S(0.452)NS(0.095)VSNHQLSGFDQAR 162.31 1.35E-14 130990000 69115 63010 34146 16598 57845 63001 77000 69212 44011 52440 TRUE FALSE FALSE 64270.39541 58016.85812 47368.24566 38640.98282 50589.54072 55228.57717 57733.78558 53453.93849 47825.90892 39308.68267 1.635017788 1.47592985 1.20503264 0.983013935 1.28698133 1.404996897 1.468728577 1.35985067 1.216675443 1 15.2625604 -4.573191334 3.749237291 1.260725069 1.610230126 0.423109826 0.150522515 0.228352466 6.451686391 0.042260147 0.143978267 2.67E-05 4.573191334 0.349505057 DKPSVEPVEEYDYEDLKESSNS(ph)VSNHQLSGFDQAR ddPTM_HeLa_A485_30min_R1 3 DKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQAR 35 2 Q9Y450;E9PN23;G5E991;E9PMN1;E9PLR4;Q9Y450-2 Q9Y450 HBS1L HBS1-like protein 1 0 DKPSVEPVEEYDYEDLKES(0.01)S(0.042)NS(0.945)VS(0.002)NHQLSGFDQAR;DKPSVEPVEEYDYEDLKES(0.003)S(0.011)NS(0.986)VSNHQLSGFDQAR;DKPSVEPVEEYDYEDLKES(0.001)S(0.003)NS(0.975)VS(0.021)NHQLSGFDQAR ;; 250.9 2.14E-52 3249080000 849420 683730 412125 454360 883210 684500 1102880 1085220 538840 779690 TRUE FALSE FALSE 1038370.549 763686.2758 564587.1875 479180.5363 795274.5113 720339.3616 867240.6783 819068.0934 646980.2455 585327.6321 1.773998854 1.304715913 0.964566093 0.818653537 1.358682672 1.230660099 1.481632902 1.399332696 1.105330092 1 19.15888486 -2.280117312 0.018695159 2.91E-06 2.727182722 0.093139416 0.254865972 11966.11014 21.60196451 1259.26952 1960.420767 0.005246657 2.280117312 2.727179815 DKPSVEPVEEYDYEDLKESSNS(ph)VSNHQLSGFDQAR ddPTM_HeLa_A486_30min_R1 2 DKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQAR 35 2 Q9Y450;E9PN23;G5E991;E9PMN1;E9PLR4;Q9Y450-2 Q9Y450 HBS1L HBS1-like protein 1 0 DKPSVEPVEEYDYEDLKESSNS(0.999)VSNHQLSGFDQAR;DKPSVEPVEEYDYEDLKESS(0.02)NS(0.976)VS(0.004)NHQLSGFDQAR ; 366.42 5.74E-171 2676900000 930800 770530 356320 46592 762000 702410 973950 839760 610550 423650 TRUE FALSE FALSE 865555.7267 709470.3966 494296.6466 108468.5306 666422.8546 615753.7958 730257.4086 648564.9798 663472.9656 317565.2825 2.725599347 2.234093069 1.556519789 0.341562937 2.098538132 1.938983351 2.299550514 2.042304419 2.089249053 1 18.27669367 DKPTYDEIFYTLS(ph)PVNGK ddPTM_HeLa_A485_30min_R1 3 DKPTYDEIFYTLSPVNGK 18 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 1 0 DKPTYDEIFYT(0.004)LS(0.996)PVNGK;DKPTYDEIFYTLS(1)PVNGK;DKPTYDEIFYTLS(1)PVNGK ;; 278.52 1.74E-69 2894390000 3765460 3212360 2070340 4858640 4684380 4040800 6118390 6487540 3067580 6295180 TRUE FALSE FALSE 4603073.586 3588017.558 2836244.92 5124055.2 4217986.679 4252370.04 4811145.994 4896460.643 3683215.168 4725907.48 0.974008401 0.75922298 0.600148211 1.084247887 0.892524176 0.89979968 1.018036433 1.036088976 0.779366753 1 22.17215996 -5.271053815 24.96698771 0.957360036 0.775936169 0.333043791 0.117222198 745.0233757 1934692.36 0.032806501 0.049350459 5.36E-06 5.271053815 -0.181423867 DKPTYDEIFYTLS(ph)PVNGK ddPTM_HeLa_A486_30min_R1 4 DKPTYDEIFYTLSPVNGK 18 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 1 0 DKPTYDEIFYTLS(1)PVNGK;DKPTYDEIFYTLS(1)PVNGK;DKPTYDEIFYTLS(1)PVNGK;DKPTYDEIFYTLS(1)PVNGK ;;; 271.66 2.83E-69 4420860000 4237160 3945620 1729590 1996450 3578600 4520290 5604420 5394280 3010940 5455830 TRUE FALSE FALSE 3940156.965 3632954.701 2399333.568 4647836.495 3129738.619 3962622.579 4202134.838 4166120.2 3271930.703 4089654.657 0.963444911 0.88832799 0.586683661 1.136486302 0.765281884 0.96893819 1.027503589 1.018697311 0.80005061 1 21.96354759 -5.275744758 24.99274931 0.955470593 0.820369734 0.196153187 0.135699104 1355.187825 2367628.651 0.037617807 0.056088513 5.30E-06 5.275744758 -0.135100859 DKPVPLPAPEMTVK(ac)QER ddPTM_HeLa_A486_30min_R1 2 DKPVPLPAPEMTVKQER 17 2 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9;Q9H0E9-3;H0YAH7 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 ; DKPVPLPAPEMTVK(1)QER;DKPVPLPAPEMTVK(1)QER 110.6 0.0013259 78293000 56265 73904 64376 27895.5 101435 83767 93927 85759 82071 94180 FALSE TRUE FALSE 52321.11405 68047.57789 89304.11125 64942.13376 88712.07646 73432.67922 70425.47114 66233.54781 89184.98036 70596.71499 0.741126752 0.963891562 1.264989614 0.919903055 1.256603462 1.040171334 0.997574337 0.938195889 1.263302129 1 16.10731343 -4.378155954 3.636266966 1.080052819 0.737455985 0.402527969 0.127172049 0.23243576 4.935989881 0.03063925 0.169874789 4.19E-05 4.378155954 -0.342596834 DKPVYDELFYTLS(ph)PINGK ddPTM_HeLa_A485_30min_R1 2 DKPVYDELFYTLSPINGK 18 1 Q9H223 Q9H223 EHD4 EH domain-containing protein 4 1 0 DKPVYDELFYT(0.189)LS(0.811)PINGK;DKPVYDELFYTLS(1)PINGK ; 175.77 4.27E-13 82322000 190992 162323 102998 226760 232450 212136 295210 325770 154149 305810 TRUE FALSE FALSE 233477.5115 181305.2628 141101.2463 239147.3246 209306.4618 223243.1129 232135.9719 245874.3967 185085.2904 229577.195 1.016989129 0.789735508 0.614613513 1.04168589 0.911704065 0.972409794 1.011145605 1.070987894 0.806200678 1 17.80861981 -5.293903503 24.96479827 0.975360385 0.805374843 0.309541955 0.113807887 729.8406347 561243.372 0.031910771 0.047334905 5.08E-06 5.293903503 -0.169985542 DKPVYDELFYTLS(ph)PINGK ddPTM_HeLa_A486_30min_R1 1 DKPVYDELFYTLSPINGK 18 1 Q9H223 Q9H223 EHD4 EH domain-containing protein 4 1 0 DKPVYDELFYTLS(1)PINGK 161.68 2.69E-12 43732000 147930 138420 61752 63861 131030 156610 200280 173800 101810 179480 TRUE FALSE FALSE 137560.8709 127451.0951 85664.02818 148671.6354 114594.9956 137289.0505 150167.8257 134229.534 110634.9728 134537.0398 1.022475826 0.947330901 0.636731924 1.105060997 0.851772834 1.020455413 1.116182026 0.997714341 0.822338391 1 17.03764389 DKQS(ph)PSQANGCSDHRPIDILEMLSR ddPTM_HeLa_A485_30min_R1 4 DKQSPSQANGCSDHRPIDILEMLSR 25 2 Q9NPI6-2;Q9NPI6;A0A087WT55;A0A087WVE6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 DKQS(0.989)PS(0.011)QANGCSDHRPIDILEMLSR;DKQS(0.998)PS(0.002)QANGCSDHRPIDILEMLSR;DKQS(0.731)PS(0.268)QANGCS(0.001)DHRPIDILEMLSR;DKQS(0.897)PS(0.103)QANGCSDHRPIDILEMLSR ;;; 207.23 5.87E-29 1485820000 466850 552226 479387 280381 771197 497399 786113 799081 509412 576269 TRUE FALSE FALSE 570699.1719 616804.027 656732.2003 295697.5041 694413.9188 523442.0425 618153.5356 603105.1318 611646.3158 432615.7437 1.319182624 1.425754924 1.518049701 0.683510733 1.605151752 1.209946818 1.428874341 1.394089652 1.413832771 1 18.72272664 -11.17367642 2.314395666 0.164310002 1.331192881 0.148282354 0.239494252 11860449.31 2615389.267 51970221.72 0.057912393 6.70E-12 11.17367642 1.166882878 DKQS(ph)PSQANGCSDHRPIDILEMLSR ddPTM_HeLa_A486_30min_R1 4 DKQSPSQANGCSDHRPIDILEMLSR 25 2 Q9NPI6-2;Q9NPI6;A0A087WT55;A0A087WVE6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 DKQS(0.496)PS(0.496)QANGCS(0.008)DHRPIDILEMLSR;DKQS(0.76)PS(0.203)QANGCS(0.037)DHRPIDILEMLSR;DKQS(0.914)PS(0.086)QANGCSDHRPIDILEMLSR;DKQS(0.993)PS(0.007)QANGCSDHRPIDILEMLSR ;;; 188.26 6.96E-21 1128810000 550129 529851 363361 51292.5 562080 490498 610839 532071 531177 317589 TRUE FALSE FALSE 511567.798 487863.6771 504064.1103 119411.5322 491578.6852 429985.3438 458000.6214 410930.0483 577219.85 238062.6472 2.148878893 2.049307956 2.117359091 0.501597095 2.064913126 1.806185677 1.923865952 1.72614248 2.424655261 1 17.86098175 -9.854120475 14.94651752 0.999956508 1.837590822 0.215157371 0.492142706 0 0 0.478395257 0.116027893 1.40E-10 9.854120475 0.837634314 DKRPLS(ph)GPDVGTPQPAGLASGAK ddPTM_HeLa_A485_30min_R1 2 DKRPLSGPDVGTPQPAGLASGAK 23 2 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 DKRPLS(0.999)GPDVGT(0.001)PQPAGLASGAK;DKRPLS(0.973)GPDVGT(0.027)PQPAGLASGAK ; 200 4.58E-29 3032300000 1837490 1490940 1008910 2077990 1936110 1899420 2963100 3300200 1575700 3033700 TRUE FALSE FALSE 2246233.311 1665292.464 1382147.793 2191505.332 1743344.09 1998870.694 2330009.479 2490820.775 1891928.537 2277454.421 0.986291225 0.731207812 0.606882746 0.962260896 0.765479245 0.877677584 1.023076228 1.093686333 0.830720703 1 21.11899075 -6.579567199 3.953280683 0.993693049 0.80392237 0.326038783 0.119046749 0.254673825 8.216198561 0.047295653 0.036516012 2.63E-07 6.579567199 -0.189770679 DKRPLS(ph)GPDVGTPQPAGLASGAK ddPTM_HeLa_A486_30min_R1 3 DKRPLSGPDVGTPQPAGLASGAK 23 2 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 DKRPLS(1)GPDVGTPQPAGLASGAK;DKRPLS(0.974)GPDVGT(0.026)PQPAGLASGAK;DKRPLS(1)GPDVGTPQPAGLASGAK ;; 171.29 6.19E-15 3565560000 2317560 2157210 1099380 957980 2102920 2326020 2940550 2672090 1724060 2829070 TRUE FALSE FALSE 2155111.012 1986264.823 1525089.378 2230225.854 1839152.165 2039059.302 2204793.288 2063713.438 1873502.909 2120652.458 1.016249034 0.93662911 0.719160451 1.051669662 0.867257696 0.961524504 1.03967686 0.973150235 0.883455892 1 21.01607677 -6.501540041 23.64144845 0.975942891 0.915456951 0.079577407 0.091224502 1006.950175 1115617.477 0.032370375 0.02822657 3.15E-07 6.501540041 -0.060485939 DKRVS(ph)NTPLR ddPTM_HeLa_A485_30min_R1 1 DKRVSNTPLR 10 2 O75781-2;O75781 O75781-2 PALM Paralemmin-1 1 0 DKRVS(0.713)NT(0.287)PLR 50.314 0.034536 249800000 346080 336280 182850 492240 338960 443400 647130 617580 303750 788090 TRUE FALSE FALSE 423064.302 375605.0208 250493.824 519129.8248 305211.9522 466615.7384 508865.3889 466117.5367 364709.8388 591633.6667 0.71507814 0.634860796 0.423393458 0.87745146 0.51587996 0.788690307 0.86010215 0.787848229 0.616445377 1 19.17434463 -6.385269721 8.233015069 0.801921441 0.635527872 0.279964547 0.141923271 0.428775817 26.89757097 0.048519952 0.04272621 4.12E-07 6.385269721 -0.166393569 DKS(ph)FDDEESVDGNRPSSAASAFK ddPTM_HeLa_A485_30min_R1 1 DKSFDDEESVDGNRPSSAASAFK 23 2 E7ERI8;E7EW49;O75122-3 E7ERI8 CLASP2 CLIP-associating protein 2 1 0 DKS(1)FDDEESVDGNRPSSAASAFK 171.93 5.63E-15 333020000 215780 99058 76247 499000 198550 143290 307170 201770 137430 681810 TRUE FALSE FALSE 263779.5166 110641.9714 104453.9382 526259.1065 178781.6648 150792.4428 241540.6202 152285.5911 165010.9404 511847.3148 0.515348052 0.216162063 0.204072455 1.028156427 0.349287101 0.294604345 0.471899751 0.29752152 0.322383132 1 18.96535399 -10.29852656 3.521573243 1.001990862 0.410588476 0.377696901 0.226792595 232947647.5 352727808.9 4906748.31 0.056380479 5.03E-11 10.29852656 -0.591402386 DKS(ph)FDDEESVDGNRPSSAASAFK ddPTM_HeLa_A486_30min_R1 1 DKSFDDEESVDGNRPSSAASAFK 23 2 E7ERI8;E7EW49;O75122-3 E7ERI8 CLASP2 CLIP-associating protein 2 1 0 DKS(0.997)FDDEES(0.003)VDGNRPSSAASAFK 65.171 0.0091267 258370000 49935 52135 24053 35549 48192 76712 79382 82305 44583 103380 TRUE FALSE FALSE 46434.81436 48003.63273 33366.96576 82759.86855 42147.30999 67248.05339 59519.78398 63565.94821 48447.49034 77492.97511 0.59921321 0.619457863 0.430580523 1.067966076 0.543885558 0.867795478 0.768066833 0.820280137 0.625185577 1 16.24177791 -3.867827442 0.084084036 1.186972163 9.83E-21 0.258040746 0.167940673 132.5319954 1.579155304 5.417933037 20.67322592 0.000135573 3.867827442 -1.186972163 DKS(ph)HSHTPSRR ddPTM_HeLa_A486_30min_R1 1 DKSHSHTPSRR 11 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DKS(0.979)HS(0.017)HT(0.003)PS(0.001)RR 51.211 0.018393 6526600 15681 14434 12651 5120.6 13682 29533 26991 19623 22621 27024 TRUE FALSE FALSE 14581.84288 13290.19727 17549.80601 11921.01558 11965.87598 25889.51873 20237.56632 15155.27127 24581.80649 20257.0145 0.719841657 0.656078776 0.866356985 0.588488278 0.590702839 1.278052041 0.999039928 0.748149302 1.213496021 1 14.30613394 -6.24477116 24.9951695 1.028962582 0.687518303 0.588252046 0.151619659 637.1565505 955461.6815 0.050519744 0.05038006 5.69E-07 6.24477116 -0.341444279 DKS(ph)PGRPLER ddPTM_HeLa_A485_30min_R1 4 DKSPGRPLER 10 2 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 DKS(1)PGRPLER;DKS(1)PGRPLER;DKS(1)PGRPLER;DKS(1)PGRPLER ;;; 116.63 0.00019245 4113860000 1142270 1067580 809603 1581980 1281400 1313020 2008200 1845140 1054560 2193730 TRUE FALSE FALSE 1396364.021 1192424.194 1109108.84 1668399.562 1153819.317 1381767.697 1579131.665 1392616.522 1266200.519 1646873.484 0.847887852 0.724053308 0.673463293 1.013070875 0.700611995 0.839024801 0.95886641 0.845612329 0.768851118 1 20.6512983 -14 0.096029187 1.553598305 0.692022885 0.226257139 0.102341497 296.8486906 1.952744264 33.50363407 1.975352458 1.00E-14 14 -0.861575421 DKS(ph)PGRPLER ddPTM_HeLa_A486_30min_R1 5 DKSPGRPLER 10 2 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 DKS(1)PGRPLER;DKS(1)PGRPLER;DKS(1)PGRPLER;DKS(1)PGRPLER;DKS(1)PGRPLER ;;;; 122.97 5.79E-05 4025450000 1360670 1251100 663738 596958 1124800 1381050 1806890 1630050 1004150 1889210 TRUE FALSE FALSE 1265294.06 1151958.28 920755.1291 1389748.393 983717.0957 1210670.092 1354787.011 1258923.199 1091190.531 1416139.519 0.893481216 0.813449709 0.650186734 0.981364035 0.694647019 0.854908769 0.956676226 0.888982464 0.77053886 1 20.43353198 -6.519545684 24.9533726 0.896368589 0.80469712 0.165187726 0.102673786 264.7272791 1981944.648 0.037423635 0.029598861 3.02E-07 6.519545684 -0.091671469 DKS(ph)PPPLSWGK ddPTM_HeLa_A486_30min_R1 1 DKSPPPLSWGK 11 1 Q9UK61;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61 FAM208A Protein FAM208A 1 0 DKS(1)PPPLSWGK 111.43 0.00024676 224440000 292130 281110 105770 140870 205360 322830 367830 314850 229920 520000 TRUE FALSE FALSE 271653.1956 258833.8198 146726.9766 327952.4792 179601.8339 283002.5169 275795.0435 243165.5281 249849.6507 389788.6154 0.696924397 0.664036377 0.376427045 0.84135982 0.460767264 0.726041002 0.707550279 0.623839483 0.640987553 1 18.57233243 -13.99999998 0.306646631 4.165821221 0.618065827 0.429772335 0.125535771 263.6578332 2.412600916 537.9996078 0.115856165 1.00E-14 13.99999998 -3.547755394 DKS(ph)PSSLLEDAK ddPTM_HeLa_A485_30min_R1 2 DKSPSSLLEDAK 12 1 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 DKS(0.996)PS(0.003)SLLEDAK;DKS(0.758)PS(0.214)S(0.027)LLEDAK ; 151.59 5.37E-08 1541530000 1544980 966610 513800 2848600 1280600 1322620 2320900 1945650 973580 3741600 TRUE FALSE FALSE 1888655.471 1079646.631 703876.001 3004211.805 1153098.968 1391870.338 1825020.755 1468476.287 1168968.576 2808887.979 0.672385472 0.384367992 0.250588847 1.069537777 0.410517962 0.495523619 0.649730701 0.522796316 0.416167745 1 21.42156766 -9.963593894 4.068517415 1.000026705 0.541115075 0.295115684 0.212677352 242198833.9 530035363.8 98467.33976 0.0539274 1.09E-10 9.963593894 -0.45891163 DKS(ph)PSSLLEDAK ddPTM_HeLa_A486_30min_R1 3 DKSPSSLLEDAK 12 1 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 DKS(0.977)PS(0.022)SLLEDAK;DKS(0.964)PS(0.036)SLLEDAK;DKS(0.79)PS(0.21)SLLEDAK ;; 221.85 2.46E-23 2404430000 2726400 2194320 887470 1529630 1730710 3046940 4018920 3503690 1736330 5223230 TRUE FALSE FALSE 2535293.439 2020434.092 1231122.151 3561055.943 1513628.214 2671039.522 3013343.708 2705976.272 1886836.482 3915299.21 0.647535042 0.51603568 0.314438842 0.909523322 0.386593242 0.682205721 0.769633059 0.691128858 0.481913739 1 21.90069113 -14 0.186256077 2.650410658 0.527316258 0.326711716 0.170953109 158.7298063 1.543764564 97.31804873 0.480086501 1.00E-14 14 -2.1230944 DKS(ph)PVREPIDNLTPEER ddPTM_HeLa_A485_30min_R1 10 DKSPVREPIDNLTPEER 17 2 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;H0Y4X3;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(0.997)PVREPIDNLT(0.003)PEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER ;;;;;;;;; 278.19 7.71E-60 1.40E+11 6267292 5297333 3959687 9448991 7582740 6635926 11022517 10703082 5325819 11968577 TRUE FALSE FALSE 7661429.483 5916810.014 5424539.998 9965165.452 6827775.781 6983372.824 8667466.197 8078134.358 6394662.022 8985031.019 0.852688151 0.658518596 0.603730804 1.109085259 0.759905644 0.777223007 0.964656235 0.899065829 0.711701719 1 23.09909205 -1.000000148 0.050952324 1.265753708 0.016686814 0.137903196 0.141535967 938.2432801 3.613366684 20.57777136 91.59579865 0.099999966 1.000000148 -1.249066894 DKS(ph)PVREPIDNLTPEER ddPTM_HeLa_A486_30min_R1 11 DKSPVREPIDNLTPEER 17 2 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;H0Y4X3;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER;DKS(1)PVREPIDNLTPEER ;;;;;;;;;; 300.15 5.84E-69 1.28E+11 13373750 12379209 6436240 6716252 11276105 14165722 18861776 17442218 10399819 20453866 TRUE FALSE FALSE 12436319.19 11398235.39 8928524.496 15635774.08 9861750.765 12418099.25 14142360.15 13471005.72 11301283.68 15332084.82 0.811130341 0.743423711 0.582342493 1.019807434 0.643210032 0.809941987 0.922402942 0.878615392 0.737100258 1 23.87005055 -13.99999999 0.097316879 1.663176054 0.647306818 0.225806526 0.120201884 284.3228409 1.890244499 38.35330145 2.180265682 1.00E-14 13.99999999 -1.015869235 DKS(ph)TTPGGTGIKPFLER ddPTM_HeLa_A485_30min_R1 2 DKSTTPGGTGIKPFLER 17 2 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 DKS(0.48)T(0.48)T(0.041)PGGTGIKPFLER;DKS(0.383)T(0.308)T(0.308)PGGTGIKPFLER ; 113.17 9.07E-05 1187400000 619650 475490 325160 627320 748590 648320 884390 960320 491320 867870 TRUE FALSE FALSE 757489.0047 531094.4193 445450.215 661588.9031 674057.7511 682265.0327 695432.8517 724800.0143 589923.4173 651525.981 1.162638217 0.815154629 0.683702919 1.015445159 1.034583072 1.047180086 1.067390821 1.112465252 0.9054488 1 19.31346318 -5.48887644 24.94779539 1.035375878 0.87489913 0.212001685 0.121720735 829.6342338 608709.6797 0.034369745 0.050946268 3.24E-06 5.48887644 -0.160476749 DKS(ph)TTPGGTGIKPFLER ddPTM_HeLa_A486_30min_R1 2 DKSTTPGGTGIKPFLER 17 2 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 DKS(0.333)T(0.333)T(0.333)PGGTGIKPFLER;DKS(0.355)T(0.355)T(0.287)PGGT(0.003)GIKPFLER ; 106.03 0.00014595 1197540000 639030 651000 278100 332540 616750 697760 872490 858960 448340 838110 TRUE FALSE FALSE 594237.297 599412.3891 385787.7678 774169.9256 539391.464 611677.4655 654183.7737 663393.559 487202.4722 628241.8008 0.945873541 0.954110962 0.614075293 1.23228019 0.858573026 0.973633822 1.041292975 1.055952594 0.775501521 1 19.26096041 -5.259567904 24.99998011 0.989214777 0.849629059 0.192077804 0.143182284 302.6428554 4042800.653 0.038288505 0.062254372 5.50E-06 5.259567904 -0.139585718 DKSDS(ph)DTEGLLFSR ddPTM_HeLa_A485_30min_R1 7 DKSDSDTEGLLFSR 14 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 DKS(0.014)DS(0.968)DT(0.018)EGLLFSR;DKSDS(0.971)DT(0.029)EGLLFSR;DKS(0.003)DS(0.97)DT(0.027)EGLLFSR;DKS(0.033)DS(0.68)DT(0.287)EGLLFSR;DKSDS(0.789)DT(0.211)EGLLFSR;DKS(0.008)DS(0.962)DT(0.03)EGLLFSR;DKSDS(0.931)DT(0.069)EGLLFSR ;;;;;; 270.73 1.04E-43 4956526000 3612159 2952873 1652535 4680085 2618044 3098530 4224730 3749663 2311884 6516180 TRUE FALSE FALSE 4415671.308 3298185.811 2263876.464 4935746.193 2357382.347 3260764.24 3322081.923 2830052.27 2775857.913 4891816.247 0.902664999 0.674225205 0.462788533 1.008980293 0.481903291 0.666575373 0.679110121 0.578527918 0.567449342 1 22.22193878 -10.08569903 4.662065435 1.000016262 0.665258411 0.269652757 0.163242939 211159778 2.618105837 41455.37679 0.037833006 8.21E-11 10.08569903 -0.334757851 DKSDS(ph)DTEGLLFSR ddPTM_HeLa_A486_30min_R1 6 DKSDSDTEGLLFSR 14 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 DKS(0.003)DS(0.991)DT(0.006)EGLLFSR;DKS(0.001)DS(0.552)DT(0.447)EGLLFSR;DKS(0.001)DS(0.61)DT(0.389)EGLLFSR;DKS(0.065)DS(0.931)DT(0.005)EGLLFSR;DKS(0.002)DS(0.98)DT(0.018)EGLLFSR;DKSDS(0.889)DT(0.111)EGLLFSR ;;;;; 214.63 6.14E-22 3079710000 3270210 3122140 1272890 1399880 2153990 3398910 3834200 3336460 2498880 5349930 TRUE FALSE FALSE 3040985.166 2874730.256 1765787.097 3258991.386 1883816.489 2979587.042 2874842.606 2576820.892 2715484.93 4010272.706 0.758298846 0.716841588 0.440315965 0.81266079 0.469747727 0.742988635 0.716869604 0.642555028 0.677132238 1 21.93526892 -11.76277046 0.425619953 1.730849858 0.653856412 0.436715052 0.114496278 106.3441885 4.229176421 70.88801001 0.063828361 1.73E-12 11.76277046 -1.076993446 DKSDS(ph)PAIQLR ddPTM_HeLa_A486_30min_R1 2 DKSDSPAIQLR 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 DKS(0.194)DS(0.806)PAIQLR;DKS(0.035)DS(0.965)PAIQLR ; 136.39 9.76E-06 765710000 636850 606120 296290 269570 578150 659380 826990 770770 473770 894980 TRUE FALSE FALSE 592210.1037 558088.8437 411021.4229 627572.5833 505633.036 578032.3997 620068.355 595282.4968 514836.7651 670871.1827 0.882747864 0.831886744 0.612668175 0.935459146 0.753696163 0.861614591 0.924273349 0.887327571 0.767415233 1 19.35567625 -6.468552537 7.28887678 0.886475106 0.801957889 0.168197431 0.095865589 0.52347492 61.39233385 0.033541972 0.029279167 3.40E-07 6.468552537 -0.084517217 DKSKYDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_A485_30min_R1 1 DKSKYDEIFYNLAPADGKLSGSK 23 3 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 DKSKYDEIFYNLAPADGKLS(0.971)GS(0.029)K 154.19 7.63E-10 444950000 973620 539450 229630 1279600 781170 1113100 2139000 2317800 579920 2064300 TRUE FALSE FALSE 1190198.41 602533.9849 314579.6927 1349501.308 703393.9719 1171380.195 1681985.176 1749355.916 696304.6247 1549708.001 0.768014626 0.388804849 0.202992882 0.870810054 0.453888069 0.755871554 1.085356193 1.128829376 0.449313435 1 20.56356497 -6.479099474 4.443353083 0.927718236 0.531304869 0.345086051 0.246197212 0.23928355 10.43667121 0.091706831 0.077179881 3.32E-07 6.479099474 -0.396413367 DKSKYDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_A486_30min_R1 1 DKSKYDEIFYNLAPADGKLSGSK 23 3 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 DKSKYDEIFYNLAPADGKLS(0.966)GS(0.034)K 200.94 5.58E-28 363200000 346790 214920 54985 243620 193590 301030 567430 489630 153650 675380 TRUE FALSE FALSE 322481.8118 197888.9565 76276.66455 567159.6719 169308.137 263891.9792 425453.0123 378151.9375 166968.5057 506260.452 0.636987959 0.390883696 0.150666844 1.120292272 0.334428922 0.521257345 0.840383662 0.746951369 0.329807523 1 18.94952026 -14 0.14389956 2.433803397 0.428401299 0.177584616 0.273011908 240.4510076 2.092261509 99.7334328 1.549658779 1.00E-14 14 -2.005402098 DKVEENSVRS(ph)PR ddPTM_HeLa_A485_30min_R1 4 DKVEENSVRSPR 12 2 Q92576-2;Q92576;D6R9X2;E9PE34;A0A1B0GX99;D6RBF0 Q92576-2 PHF3 PHD finger protein 3 1 0 DKVEENS(0.01)VRS(0.99)PR;DKVEENS(0.013)VRS(0.987)PR;DKVEENS(0.028)VRS(0.972)PR;DKVEENS(0.02)VRS(0.98)PR ;;; 126.46 2.78E-05 1730390000 525571 766210 536043 654670 1081240 887940 1270910 1622200 682478 1078820 TRUE FALSE FALSE 642482.4558 855811.5944 734347.6123 690432.9644 973587.9491 934431.1654 999369.6961 1224352.906 819445.0745 809890.0282 0.793295921 1.05670099 0.906725094 0.852502118 1.202123641 1.153775368 1.23395728 1.511752045 1.011797955 1 19.6273665 -5.770151999 24.19258688 1.211985272 0.913649887 0.463361399 0.147504905 106.2896996 295136.8712 0.044570397 0.051349997 1.70E-06 5.770151999 -0.298335384 DKVEENSVRS(ph)PR ddPTM_HeLa_A486_30min_R1 2 DKVEENSVRSPR 12 2 Q92576-2;Q92576;D6R9X2;E9PE34;A0A1B0GX99;D6RBF0 Q92576-2 PHF3 PHD finger protein 3 1 0 DKVEENS(0.012)VRS(0.988)PR;DKVEENS(0.18)VRS(0.82)PR ; 93.909 0.0012394 739330000 361770 309830 225790 171832 435140 342410 484480 497680 285900 394670 TRUE FALSE FALSE 336411.7912 285277.9424 313221.9349 400033.5799 380560.6837 300166.9356 363257.9797 384369.1283 310682.0422 295842.0631 1.137133062 0.96429135 1.058747129 1.352186284 1.286364351 1.014618856 1.227878064 1.299237587 1.050161829 1 18.17446767 -5.034920292 24.78906009 1.189629759 1.040913898 0.166101898 0.122648979 765.1024119 543127.0166 0.032759792 0.056778876 9.23E-06 5.034920292 -0.148715861 DKVSDGVT(ph)KSPEKR ddPTM_HeLa_A486_30min_R1 1 DKVSDGVTKSPEKR 14 3 A0A669KB77;P11137-3;P11137;P11137-2 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DKVSDGVT(0.765)KS(0.235)PEKR 106.67 0.0004314 384190000 511290 353690 101120 439030 274460 634820 919410 827630 279040 1288500 TRUE FALSE FALSE 475451.2113 325662.3163 140276.3721 1022084.027 240034.6676 556502.3628 689363.8935 639196.716 303227.4119 965851.2133 0.492261339 0.337176484 0.145236005 1.05822099 0.248521371 0.576178147 0.713737151 0.661796255 0.313948368 1 19.88144144 -14 0.140405605 2.594583361 0.345432052 0.250613173 0.253810304 198.589751 1.704103306 89.62830088 1.53280273 1.00E-14 14 -2.24915131 DKVSDGVTKS(ph)PEKR ddPTM_HeLa_A485_30min_R1 1 DKVSDGVTKSPEKR 14 3 A0A669KB77;P11137-3;P11137;P11137-2 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DKVSDGVT(0.062)KS(0.938)PEKR 135.38 6.33E-05 437010000 450990 275190 114920 914140 410510 488750 919740 850160 270630 1276100 TRUE FALSE FALSE 551311.1696 307371.0767 157433.6902 964077.1535 369638.183 514340.1942 723230.0354 641656.927 324942.9586 957991.7549 0.575486341 0.320849397 0.164337208 1.006352245 0.385846936 0.536894176 0.754943904 0.669793789 0.339191811 1 19.86965371 -14 0.137787815 2.510187518 0.367636558 0.263152903 0.23258106 195.2592197 1.657202092 82.04214292 1.507785165 1.00E-14 14 -2.14255096 DKVSDGVTKS(ph)PEKR ddPTM_HeLa_A486_30min_R1 1 DKVSDGVTKSPEKR 14 3 A0A669KB77;P11137-3;P11137;P11137-2 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DKVS(0.001)DGVT(0.22)KS(0.779)PEKR 90.718 0.0078332 446070000 440460 323390 90891 505560 299700 589990 817500 741080 257400 1145100 TRUE FALSE FALSE 409586.0285 297763.3986 126086.4293 1176969.23 262108.8314 517203.0324 612952.8534 572352.2617 279711.6392 858359.5066 0.477173056 0.346898236 0.146892332 1.371184475 0.305360201 0.602548266 0.714098054 0.666797836 0.325867701 1 19.71122249 -14 0.149246064 2.399952934 0.435076005 0.136524505 0.324359911 293.2585508 2.602628924 124.720847 1.674084751 1.00E-14 14 -1.964876929 DKVYGVADSCTS(ph)LLSGR ddPTM_HeLa_A486_30min_R1 1 DKVYGVADSCTSLLSGR 17 1 A8MYU2 A8MYU2 KCNU1 Potassium channel subfamily U member 1 1 0 DKVY(0.003)GVADS(0.091)CT(0.413)S(0.492)LLS(0.001)GR 41.136 0.037189 402200000 329900 391430 326700 137780 472290 391680 431540 466430 363960 429540 TRUE FALSE FALSE 306775.7136 360411.6612 453206.9893 320758.803 413050.9843 343358.5039 323564.1276 360234.0711 395508.3458 321980.3882 0.952777638 1.119359049 1.407560851 0.996206026 1.282845165 1.066395708 1.004918745 1.118807494 1.228361603 1 18.29661329 DLADELALVDVIEDK ddPTM_HeLa_A486_30min_R1 1 DLADELALVDVIEDK 15 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;P00338-4;F5GXH2;F5H5J4;F5H6W8;F5GZQ4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 98.353 0.00144 0 6551.5 11604 6492.7 4929.9 26365 11950 10995 10734 7700.5 10189 FALSE FALSE TRUE 6092.273682 10684.45678 9006.847321 11477.05634 23058.05586 10475.7305 8243.934707 8290.102522 8367.98554 7637.608081 0.797667754 1.398927081 1.179275923 1.50270297 3.019015327 1.371598331 1.079386978 1.085431778 1.095629083 1 12.89890518 -6.525867646 23.12017148 1.094125136 1.608214045 0.167109375 0.538091226 72.84963665 563482.1436 0.220503998 0.17200415 2.98E-07 6.525867646 0.514088908 DLAFTLEER ddPTM_HeLa_A485_30min_R1 1 DLAFTLEER 9 0 P48163 P48163 ME1 NADP-dependent malic enzyme 0 0 95.815 0.019209 0 7113.7 11293 11168 8649.9 14579 8916.7 12865 14560 9348.1 12635 FALSE FALSE TRUE 8696.118023 12613.61811 15299.50794 9122.422134 13127.46357 9383.564624 10116.28765 10989.13717 11224.17792 9485.32703 0.916796859 1.329803187 1.612965783 0.961740392 1.383975853 0.989271598 1.066519649 1.158540674 1.183320078 1 13.2114818 -6.268759888 24.80651482 1.088626026 1.251130866 0.143968745 0.195539592 1081.109864 3663473.331 0.068246579 0.061393843 5.39E-07 6.268759888 0.162504841 DLAVPAALT(ph)PR ddPTM_HeLa_A485_30min_R1 6 DLAVPAALTPR 11 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 0 DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR ;;;;; 148.08 3.74E-06 1308314000 1263143 1299851 912618 1085715 1030401 1035988 1075898 1583190 1057308 2203990 TRUE FALSE FALSE 1544124.803 1451857.267 1250233.375 1145024.861 927810.6585 1090230.73 846023.603 1194910.17 1269500.017 1654575.854 0.933245096 0.877480028 0.755621673 0.692035278 0.560754381 0.658918554 0.511323552 0.722185185 0.767266133 1 20.65803 -4.822113308 1.998715982 0.674824499 0.930575372 0.279584854 0.125269361 0.38662304 2.959830251 0.034502798 0.120475042 1.51E-05 4.822113308 0.255750873 DLAVPAALT(ph)PR ddPTM_HeLa_A486_30min_R1 4 DLAVPAALTPR 11 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 0 DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR ;;; 139.86 3.42E-05 1023380000 1481660 1310030 1027050 300429 1348020 1052270 1089750 902910 1206360 1227090 TRUE FALSE FALSE 1377803.285 1206218.452 1424751.265 699413.8948 1178938.762 922451.6261 817083.0238 697337.1034 1310928.256 919818.677 1.49790749 1.31136547 1.548947962 0.760382358 1.281707788 1.002862465 0.888308799 0.758124531 1.425202911 1 19.81098997 -5.249512982 24.98546165 1.011698753 1.438602844 0.487710256 0.204614987 637.874497 1336326.488 0.053805937 0.092256602 5.63E-06 5.249512982 0.426904091 DLDDFQSWLSR ddPTM_HeLa_A486_30min_R1 1 DLDDFQSWLSR 11 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 117.14 0.001283 0 23375 26259 18082 10447 29574 22611 25731 25940 20710 26641 FALSE FALSE TRUE 21736.53321 24178.14121 25083.83465 24321.14396 25864.55315 19821.48471 19292.83165 20034.02827 22505.15947 19969.9202 1.088463699 1.210727983 1.256080866 1.217888891 1.295175589 0.992567047 0.966094579 1.003210232 1.1269529 1 14.28554095 -6.271547668 24.96614649 1.014736182 1.216094935 0.705731625 0.063225359 387.7970157 957805.211 0.022786464 0.020322435 5.35E-07 6.271547668 0.201358753 DLDEDELLGNLS(ph)ETELK ddPTM_HeLa_A485_30min_R1 1 DLDEDELLGNLSETELK 17 0 H0YNU8;Q9NYL9 H0YNU8 TMOD3 Tropomodulin-3 1 0 DLDEDELLGNLS(0.995)ET(0.005)ELK 237.59 4.11E-34 0 45861 25768 21824 89888 47981 26047 47672 31442 26528 107740 TRUE FALSE FALSE 56062.62123 28781.34345 29897.60577 94798.35383 43203.84317 27410.78064 37486.48776 23730.8002 31851.92627 80882.40081 0.693137452 0.355841854 0.369642907 1.172051681 0.53415629 0.338896724 0.463469029 0.293398811 0.393805401 1 16.3035382 -10.15586536 5.083558076 1.000025014 0.510901698 0.260136874 0.246520215 7.33E-05 1.22E-05 0.250389478 0.060725268 6.98E-11 10.15586536 -0.489123316 DLDEDELLGNLS(ph)ETELK ddPTM_HeLa_A486_30min_R1 3 DLDEDELLGNLSETELK 17 0 H0YNU8;Q9NYL9 H0YNU8 TMOD3 Tropomodulin-3 1 0 DLDEDELLGNLS(1)ETELK;DLDEDELLGNLS(1)ETELK;DLDEDELLGNLS(0.975)ET(0.025)ELK ;; 262.59 1.13E-51 165536000 152843 230169 98149 131338 175300 272633 286295 251292 159645 299043 TRUE FALSE FALSE 142129.495 211929.5702 136154.9213 305761.5015 153312.2394 238998.3124 214660.9629 194078.2973 173483.1571 224160.6864 0.634051837 0.945435944 0.607398753 1.364028218 0.683939017 1.066191919 0.957620921 0.865799889 0.773923206 1 17.77417375 -3.657806665 1.091603998 0.930700485 2.26E-12 0.150225193 0.201412521 10.87898495 4.222042058 0.058577585 16.06110017 0.000219884 3.657806665 -0.930700485 DLDEEGS(ph)EK ddPTM_HeLa_A485_30min_R1 4 DLDEEGSEK 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 DLDEEGS(1)EK;DLDEEGS(1)EK;DLDEEGS(1)EK;DLDEEGS(1)EK ;;; 181.68 3.40E-08 3682640000 7177970 5673620 2382710 10648400 3564820 4100910 6683080 4760520 2938750 10612500 TRUE FALSE FALSE 8774684.663 6337100.505 3264173.582 11230095.13 3209894.004 4315627.306 5255185.362 3592995.006 3528530.169 7966999.059 1.1013789 0.795418759 0.409711807 1.40957656 0.402898755 0.54168794 0.659619177 0.450984741 0.442893258 1 22.92560497 DLDEEGS(ph)EK ddPTM_HeLa_A486_30min_R1 4 DLDEEGSEK 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 DLDEEGS(1)EK;DLDEEGS(1)EK;DLDEEGS(1)EK;DLDEEGS(1)EK ;;; 214.64 5.45E-11 4022920000 9737930 7610180 1964390 3509130 3022420 7626840 8370670 6151300 5230480 18645700 TRUE FALSE FALSE 9055351.394 7007121.621 2725054.416 8169431.982 2643319.901 6685918.025 6276239.83 4750783.272 5683862.218 13976695.36 0.647889302 0.501343232 0.194971297 0.584503831 0.189123382 0.478361863 0.449050342 0.339907478 0.406667104 1 23.73651996 -10.39882888 3.406347353 1.005232915 0.41507985 0.599956399 0.141679379 78973278.56 110998050.1 4049529.765 0.036428123 3.99E-11 10.39882888 -0.590153064 DLDEEGS(ph)EKELHENVLDK ddPTM_HeLa_A485_30min_R1 2 DLDEEGSEKELHENVLDK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK ; 161.04 3.42E-12 781520000 603950 418870 196039 991720 301600 488060 676010 532510 276880 1119520 TRUE FALSE FALSE 738296.5939 467853.2028 268561.984 1045895.152 271571.645 513614.0669 531574.941 401911.0876 332447.2763 840444.2672 0.878459908 0.55667368 0.319547642 1.244455097 0.323128678 0.611122102 0.632492792 0.478212659 0.395561359 1 19.68079263 -10.16680453 4.6379437 1.00005433 0.602488071 0.16594863 0.266029304 0.000143939 2.59E-05 0.248085768 0.060161435 6.81E-11 10.16680453 -0.397566259 DLDEEGS(ph)EKELHENVLDK ddPTM_HeLa_A486_30min_R1 4 DLDEEGSEKELHENVLDK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK ;;; 252.11 3.48E-47 1887410000 1696636 1191086 343827 663776 516706 1375698 1425892 1108777 807138 3293690 TRUE FALSE FALSE 1577710.578 1096700.007 476966.0224 1545304.073 451895.9154 1205978.368 1069118.74 856332.6815 877101.3717 2468928.586 0.639026413 0.444200782 0.193187452 0.625900677 0.183033206 0.488462232 0.433029431 0.346843844 0.35525587 1 21.23545368 -10.21194757 3.682337317 1.000741642 0.407102275 0.59381883 0.145813282 136117127.1 228707409.5 1166078.435 0.035427604 6.14E-11 10.21194757 -0.593639368 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK ddPTM_HeLa_A485_30min_R1 1 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK 33 1 Q15029-3;Q15029;K7EIV5;K7EIT3 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 333.96 3.39E-128 122550000 125110 64996 45311 184790 113600 120810 201820 183080 93147 263280 FALSE FALSE TRUE 152940.2879 72596.71681 62073.42445 194884.6098 102289.5851 127135.4248 158699.5083 138179.3429 111840.7485 197649.1413 0.773796875 0.367300947 0.31405866 0.986012934 0.517531139 0.643237931 0.802935481 0.699114309 0.565854968 1 17.59258216 -14 0.117302029 2.187463479 0.440944317 0.257560611 0.190947498 217.2720349 1.661254624 61.60874444 1.997212752 1.00E-14 14 -1.746519163 DLDEVLQTHSVFVNVSK ddPTM_HeLa_A486_30min_R1 1 DLDEVLQTHSVFVNVSK 17 0 Q9Y3A5;A0A087X020;F8WE72 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 0 150.28 1.40E-07 0 8735.4 7988.6 6786.1 4699.2 10407 9689.6 11535 11362 7072.2 10243 FALSE FALSE TRUE 8123.09357 7355.554242 9413.859658 10939.97508 9101.657019 8494.195669 8648.820995 8775.120631 7685.22399 7678.086129 1.05795812 0.957993192 1.226068515 1.424830993 1.185406997 1.106290751 1.126429275 1.14287864 1.000929641 1 12.90653103 -7.744064908 4.399242824 0.995523994 1.158199177 0.223312338 0.114159174 0.327967414 14.35463403 0.107994813 0.03287772 1.80E-08 7.744064908 0.162675184 DLDIIDNYDYSHTVK ddPTM_HeLa_A485_30min_R1 1 DLDIIDNYDYSHTVK 15 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 149.3 2.05E-07 36624000 100810 108720 98311 129820 140910 116440 163710 173570 112870 170550 FALSE FALSE TRUE 123234.8367 121433.8583 134680.33 136911.7379 126880.5056 122536.6183 128732.0211 131001.6854 135521.9737 128035.0237 0.962508797 0.948442502 1.051902253 1.069330359 0.990982795 0.957055458 1.005443802 1.023170704 1.058475796 1 16.96617899 -4.745818769 24.94518353 1.018395237 0.955475606 0.385206901 0.032350321 269.8325888 430899.7467 0.009120628 0.023935633 1.80E-05 4.745818769 -0.062919631 DLDKELDEYMHGGK(ac)K ddPTM_HeLa_A486_30min_R1 1 DLDKELDEYMHGGKK 15 2 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 0 1 DLDKELDEYMHGGK(1)K 135.45 1.27E-05 10953000 17268 23053 10253 18749 19543 33647 30407 40933 25774 66714 FALSE TRUE FALSE 16057.60237 21226.19632 14223.23618 43648.61952 17091.73471 29495.97524 22798.84699 31613.44946 28008.11107 50008.38016 0.32109823 0.424452787 0.284417054 0.872826102 0.341777411 0.589820649 0.455900529 0.632163037 0.560068352 1 15.60988225 -14 0.128601912 2.66488058 0.288438559 0.524223716 0.155163141 117.1771796 0.953039115 50.27702022 1.190640105 1.00E-14 14 -2.37644202 DLDKPRRS(ph)PTLR ddPTM_HeLa_A485_30min_R1 2 DLDKPRRSPTLR 12 3 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 0 DLDKPRRS(0.827)PT(0.173)LR;DLDKPRRS(0.997)PT(0.003)LR ; 112.5 0.0020657 6057300000 1453240 4283100 2106970 766850 3946200 5922400 7853300 16515600 2095450 1550720 TRUE FALSE FALSE 1776508.224 4783971.287 2886425.881 808741.0737 3553302.472 6232487.706 6175378.299 12465123.2 2515987.594 1164154.043 1.526007864 4.109397134 2.479419196 0.6947028 3.05226142 5.353662382 5.30460581 10.70745172 2.161215356 1 20.15085054 -6.212844979 3.653035605 5.567555157 2.315183798 0.17925426 2.560319617 0.330462746 9.13175829 0.870509283 0.843638651 6.13E-07 6.212844979 -3.252371359 DLDKPRRS(ph)PTLR ddPTM_HeLa_A486_30min_R1 4 DLDKPRRSPTLR 12 3 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 0 DLDKPRRS(0.996)PT(0.004)LR;DLDKPRRS(0.994)PT(0.006)LR;DLDKPRRS(0.921)PT(0.079)LR;DLDKPRRS(0.882)PT(0.118)LR ;;; 128.45 0.00019742 4316360000 4815030 2639870 2638970 2291790 7959200 2804140 6070290 7030300 2003490 6466700 TRUE FALSE FALSE 4477521.262 2430677.087 3660849.858 5335402.941 6960882.919 2458193.717 4551439.237 5429654.16 2177154.126 4847396.229 0.923696156 0.501439736 0.755219851 1.100673988 1.436004525 0.507116316 0.938945162 1.120117668 0.449138883 1 22.20877858 -5.05310708 9.12816744 0.943118183 0.691658079 0.100060838 0.287487078 0.902116938 150.3666839 0.077866885 0.135929128 8.85E-06 5.05310708 -0.251460104 DLDLEPLS(ph)DLEEGLEETR ddPTM_HeLa_A485_30min_R1 2 DLDLEPLSDLEEGLEETR 18 0 P29375-2;P29375 P29375-2 KDM5A Lysine-specific demethylase 5A 1 0 DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(1)DLEEGLEETR ; 237.86 3.07E-45 191937000 182790 183446 172759 206335 175574 166681 201382 164910 168116 264710 TRUE FALSE FALSE 223451.0049 204898.4139 236669.7432 217606.5586 158093.2361 175408.1594 158355.0906 124465.5639 201855.3391 198722.6686 1.124436414 1.031077206 1.190954937 1.09502635 0.795547067 0.88267816 0.796864755 0.626327961 1.015764032 1 17.60039693 -5.754037103 22.57799186 0.832870816 1.110465778 0.561470518 0.110646701 34.68127159 105780.292 0.031885543 0.040212 1.76E-06 5.754037103 0.277594962 DLDLEPLS(ph)DLEEGLEETR ddPTM_HeLa_A486_30min_R1 3 DLDLEPLSDLEEGLEETR 18 0 P29375-2;P29375 P29375-2 KDM5A Lysine-specific demethylase 5A 1 0 DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(1)DLEEGLEETR;DLDLEPLS(1)DLEEGLEETR ;; 186.45 6.67E-18 91333500 97601.9 125114 85492.2 39775.3 101198.4 113091.3 120838 110494.5 114940.9 117958.4 TRUE FALSE FALSE 90760.51083 115199.511 118597.0694 92598.90853 88505.15303 99139.24523 90603.05431 85337.31443 124904.0698 88420.84886 1.026460524 1.302854615 1.341279471 1.047251974 1.000953442 1.121220238 1.024679761 0.965126614 1.412608806 1 16.43209896 -5.281892023 24.53351088 1.076145931 1.231463858 0.171828541 0.142014957 983.3183157 1179515.093 0.039183377 0.058199245 5.23E-06 5.281892023 0.155317926 DLDLLASVPS(ph)PSSSGSR ddPTM_HeLa_A485_30min_R1 6 DLDLLASVPSPSSSGSR 17 0 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 0 DLDLLASVPS(0.98)PS(0.013)S(0.002)S(0.002)GS(0.002)R;DLDLLASVPS(0.98)PS(0.016)S(0.003)S(0.001)GS(0.001)R;DLDLLASVPS(0.997)PS(0.002)SSGSR;DLDLLASVPS(0.867)PS(0.117)S(0.011)S(0.002)GS(0.002)R;DLDLLAS(0.008)VPS(0.973)PS(0.017)S(0.002)S(0.001)GSR;DLDLLASVPS(0.969)PS(0.022)S(0.006)S(0.001)GS(0.001)R ;;;;; 218.12 4.66E-34 2065950000 2004880 2487160 2320469 1976733 2691000 2317477 2730230 2737260 1992877 2693270 TRUE FALSE FALSE 2450858.639 2778011.727 3178907.046 2084716.918 2423074.591 2438816.512 2146894.057 2065942.693 2392829.134 2021887.355 1.21216379 1.373969583 1.572247355 1.03107471 1.19842215 1.206207906 1.061826739 1.021789215 1.183463128 1 20.94727119 -5.276111697 24.96031884 1.108191559 1.384911188 0.596386213 0.107581746 536.4149222 912539.5314 0.030748308 0.045831367 5.30E-06 5.276111697 0.276719629 DLDLLASVPS(ph)PSSSGSR ddPTM_HeLa_A486_30min_R1 5 DLDLLASVPSPSSSGSR 17 0 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 0 DLDLLAS(0.005)VPS(0.973)PS(0.014)S(0.003)S(0.003)GS(0.003)R;DLDLLASVPS(0.99)PS(0.008)S(0.002)SGSR;DLDLLASVPS(0.98)PS(0.017)S(0.002)S(0.001)GSR;DLDLLASVPS(0.983)PS(0.015)S(0.001)SGSR;DLDLLAS(0.009)VPS(0.792)PS(0.143)S(0.037)S(0.01)GS(0.01)R ;;;; 245.18 1.42E-42 1890453000 2356520 2533360 2015810 833778 2662400 2273160 2526950 2605580 2047745 2454680 TRUE FALSE FALSE 2191340.117 2332607.327 2796385.617 1941077.321 2328456.966 1992720.631 1894680.383 2012346.313 2225245.185 1840012.151 1.190937851 1.267713002 1.519764756 1.05492636 1.265457386 1.082993191 1.029710799 1.093659253 1.209364397 1 20.81128386 -5.290514243 24.99864809 1.111673105 1.320296063 0.46817439 0.107719753 629.0888551 540890.8894 0.030483869 0.045221936 5.12E-06 5.290514243 0.208622958 DLDLLASVPS(ph)PSSSGSRK ddPTM_HeLa_A486_30min_R1 1 DLDLLASVPSPSSSGSRK 18 1 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 0 DLDLLAS(0.001)VPS(0.853)PS(0.037)S(0.037)S(0.037)GS(0.037)RK 102.07 0.00014767 81810000 138320 131170 83769 46579 135760 109160 141630 138650 92070 159050 TRUE FALSE FALSE 128624.4823 120775.6115 116206.6002 108438.266 118731.7149 95692.94906 106192.676 107082.4217 100050.7017 119222.8448 1.078857685 1.01302407 0.974700784 0.909542682 0.995880572 0.80263937 0.89070745 0.898170329 0.839190693 1 16.86330118 -4.584925411 0.730175509 0.887525217 1.141668521 0.517836358 0.056700543 1.47052994 0.807905341 0.023776607 0.285960073 2.60E-05 4.584925411 0.254143304 DLDRPESQS(ph)PK ddPTM_HeLa_A485_30min_R1 3 DLDRPESQSPK 11 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 DLDRPES(0.001)QS(0.999)PK;DLDRPESQS(1)PK;DLDRPESQS(1)PK ;; 160.5 3.71E-08 4013030000 4939940 4350860 3054940 8950700 5995160 4873210 7976300 7128100 3957110 10895500 TRUE FALSE FALSE 6038812.61 4859655.23 4185089.433 9439654.077 5398260.82 5128363.74 6272098.345 5379922.299 4751265.68 8179452.367 0.738290577 0.594129657 0.511658879 1.154069203 0.65997827 0.626981308 0.766811525 0.657736247 0.580878214 1 22.96357282 -11.2800865 2.293629937 2.311492943 0.701263728 0.224415171 0.16785044 8946910.3 1064495.596 61169965.48 0.042648949 5.25E-12 11.2800865 -1.610229215 DLDRPESQS(ph)PK ddPTM_HeLa_A486_30min_R1 2 DLDRPESQSPK 11 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 DLDRPES(0.006)QS(0.994)PK;DLDRPESQS(1)PK ; 178.68 1.08E-10 3874200000 4591800 4328700 1786840 3489800 3719000 4701000 6800000 6216000 3077300 8833800 TRUE FALSE FALSE 4269938.532 3985678.047 2478752.301 8124430.765 3252528.342 4121038.416 5098568.077 4800752.494 3344042.842 6621758.982 0.644834483 0.601906239 0.374334419 1.226929399 0.491187968 0.622347994 0.76997186 0.724996562 0.505008239 1 22.65878307 -11.2642715 2.18157413 2.254140755 0.667536058 0.176635765 0.218417373 13927627.81 2353632.609 85952815.28 0.054434637 5.44E-12 11.2642715 -1.586604697 DLDSLHR ddPTM_HeLa_A485_30min_R1 2 DLDSLHR 7 0 Q8NBS9-2;Q8NBS9 Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 0 0 ; ; 138.9 0.0053583 384720000 326510 427030 426060 268510 517110 395870 490710 516180 401220 437860 FALSE FALSE TRUE 399141.0231 476967.4438 583677.3238 283178.0214 465624.7127 416597.1411 385865.7998 389586.0457 481741.1738 328709.5602 1.214266548 1.451030032 1.775662757 0.861483984 1.416523184 1.267371539 1.173880673 1.185198403 1.46555267 1 18.32645389 -5.254062149 24.99958395 1.214708547 1.477390765 0.276356793 0.209457861 814.7102032 2760841.565 0.055724744 0.094095486 5.57E-06 5.254062149 0.262682218 DLDT(ph)SDRKEDVLSTSK ddPTM_HeLa_A485_30min_R1 1 DLDTSDRKEDVLSTSK 16 2 H0YNU5;P54132;A0A3B3IT82;H0YLV8 H0YNU5 BLM Bloom syndrome protein 1 0 DLDT(0.5)S(0.5)DRKEDVLSTSK 56.327 0.034986 54255000 70779 47830 28801 122020 72477 75121 117910 113480 51321 171510 TRUE FALSE FALSE 86523.54437 53423.30243 39455.68841 128685.6436 65260.9354 79054.2194 92717.56526 85648.85207 61620.65396 128755.7134 0.671997708 0.414919859 0.30643835 0.999455793 0.506858559 0.613986108 0.720104474 0.665204283 0.478585783 1 16.97427693 -14 0.229500507 3.102939991 0.554901256 0.29708589 0.182381575 209.160338 2.094161798 204.8456506 0.321447863 1.00E-14 14 -2.548038735 DLDTHQVSDDLSETDISNEARDPQTLTDTTEEKR ddPTM_HeLa_A485_30min_R1 1 DLDTHQVSDDLSETDISNEARDPQTLTDTTEEKR 34 2 Q8NFW9-5;Q8NFW9-4;Q8NFW9-3;Q8NFW9-6;Q8NFW9-2;Q8NFW9 Q8NFW9-5 MYRIP Rab effector MyRIP 0 0 26.686 0.037434 1547800000 434260 406560 307360 163640 605420 592240 547100 695300 532390 182080 FALSE FALSE TRUE 530859.6388 454103.6554 421065.2543 172579.2388 545142.259 623248.7706 430207.6156 524776.5848 639235.7896 136690.8069 3.883652827 3.322122867 3.080421162 1.262551906 3.988141348 4.559551477 3.147304674 3.839150537 4.676509006 1 17.06055669 DLEAHIDSANK ddPTM_HeLa_A485_30min_R1 2 DLEAHIDSANK 11 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 176.95 2.72E-09 70087000 165084 156183 120148 189348 208843 166860 232724 193080 157474 283890 FALSE FALSE TRUE 201806.3663 174447.2432 164595.745 199691.6018 188049.8576 175596.5316 183000.6162 145726.8273 189077.5874 213121.4476 0.946907824 0.818534433 0.772309624 0.93698501 0.88236008 0.823927078 0.85866823 0.683773637 0.887182353 1 17.70131626 -6.270165048 23.70334697 0.831443484 0.866617777 0 0.087734875 1372.471041 3728310.318 0.030081374 0.026961579 5.37E-07 6.270165048 0.035174293 DLEEDHACIPIKK ddPTM_HeLa_A485_30min_R1 1 DLEEDHACIPIKK 13 1 P13639 P13639 EEF2 Elongation factor 2 0 0 124.86 4.26E-05 313230000 94117 71887 46422 139880 117620 89860 151560 121190 91800 163290 FALSE FALSE TRUE 115053.002 80293.55932 63595.42958 147521.2902 105909.3398 94564.93065 119177.9679 91467.96248 110223.418 122584.8081 0.938558405 0.65500416 0.518787202 1.203422287 0.863967905 0.771424552 0.9722083 0.746160669 0.899160505 1 16.90342067 -2.394569211 0.035509324 1.461432519 1.25E-09 0.079246619 0.176153371 2112.883178 7.388042692 99.93475441 226.7269029 0.004031167 2.394569211 -1.461432518 DLEEDHACIPIKK ddPTM_HeLa_A486_30min_R1 2 DLEEDHACIPIKK 13 1 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 162.49 1.18E-11 610930000 1835610 2019120 960460 1000120 2456800 2441460 2816710 2668840 1640230 2824940 FALSE FALSE TRUE 1706943.218 1859117.578 1332375.834 2328329.903 2148645.235 2140257.488 2111939.366 2061203.392 1782406.457 2117556.637 0.806090939 0.877954122 0.629204344 1.09953607 1.014681354 1.010720304 0.997347287 0.973387609 0.841727879 1 21.01396913 -5.269000156 24.99996942 0.992014085 0.781770231 0.596263263 0.08280642 403.7048683 1334863.809 0.023360934 0.035414847 5.38E-06 5.269000156 -0.210243854 DLEIAKEYDLPDAKS(ph)R ddPTM_HeLa_A485_30min_R1 1 DLEIAKEYDLPDAKSR 16 2 A0A087WTJ8;Q96NG3 A0A087WTJ8 TTC25 Tetratricopeptide repeat protein 25 1 0 DLEIAKEYDLPDAKS(1)R 60.564 0.011575 686430000 575330 436050 318790 752580 565450 685130 891400 939550 524090 973690 TRUE FALSE FALSE 703310.1736 487042.2544 436723.687 793691.5398 509151.8126 721002.3474 700945.1079 709123.8893 629270.0558 730967.0024 0.962164053 0.666298551 0.597460194 1.085810354 0.69654555 0.986367846 0.958928523 0.970117511 0.86087341 1 19.47944676 -5.257812054 24.99275189 0.928662041 0.734406703 0.318413065 0.130187998 376.2368987 2592310.401 0.03491192 0.057570183 5.52E-06 5.257812054 -0.194255338 DLEIAKEYDLPDAKS(ph)R ddPTM_HeLa_A486_30min_R1 1 DLEIAKEYDLPDAKSR 16 2 A0A087WTJ8;Q96NG3 A0A087WTJ8 TTC25 Tetratricopeptide repeat protein 25 1 0 DLEIAKEYDLPDAKS(1)R 115.34 9.05E-05 508900000 476520 432680 257230 197050 448700 508410 594510 601610 326450 568700 TRUE FALSE FALSE 443118.4088 398392.861 356836.3449 458742.3584 392419.862 445687.5433 445757.3099 464636.5361 354746.9488 426293.8184 1.039467123 0.934549937 0.837066665 1.076117782 0.920538476 1.045493798 1.045657457 1.089944344 0.83216536 1 18.70148861 -5.277134756 24.98886243 1.005474399 0.936780094 0.105146004 0.08550694 1707.729106 2718898.925 0.023645016 0.035199117 5.28E-06 5.277134756 -0.068694305 DLEK(ac)PFLLPVEAVYSVPGR ddPTM_HeLa_A486_30min_R1 1 DLEKPFLLPVEAVYSVPGR 19 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 1 DLEK(1)PFLLPVEAVYSVPGR 84.566 0.0095964 5607600 3643 4197.9 4956.5 1297 4401 4245.6 4866.7 4351.1 3673.5 5552.3 FALSE TRUE FALSE 3387.644512 3865.243116 6875.78954 3019.481547 3848.985542 3721.821038 3649.000185 3360.449514 3991.921938 4161.967941 0.813952573 0.928705644 1.6520525 0.725493706 0.924799421 0.894245485 0.876748749 0.807418404 0.959142885 1 12.02305014 DLEKPFLLPVEAVYSVPGR ddPTM_HeLa_A486_30min_R1 1 DLEKPFLLPVEAVYSVPGR 19 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 124.35 6.74E-06 0 42580 54693 35782 18616 75530 46644 51955 55498 48739 51031 FALSE FALSE TRUE 39595.36188 50358.92749 49637.74868 43338.9888 66056.32311 40889.53752 38955.30948 42862.31691 52963.73576 38252.50544 1.035105058 1.316487035 1.297633922 1.132971247 1.726849584 1.0689375 1.018372758 1.120510053 1.384582138 1 15.22326662 DLELALS(ph)PIHNSSALPTTGR ddPTM_HeLa_A485_30min_R1 4 DLELALSPIHNSSALPTTGR 20 0 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR ;;; 262.15 5.96E-59 1265700000 332636 878499 939794 147095 1184510 532164 593195 686370 662375 273692 TRUE FALSE FALSE 406629.7306 981231.8161 1287462.909 155130.4274 1066576.025 560027.2842 466454.0423 518036.6813 795307.5868 205465.6213 1.979064566 4.775649619 6.266074589 0.7550189 5.191019395 2.725649578 2.270229147 2.521281555 3.870757461 1 17.6485375 -8.997293336 0.215221494 3.46E-09 4.250796879 0.175555914 1.575686202 14.68953151 1.222083738 16.73509901 4.533127127 1.01E-09 8.997293336 4.250796875 DLELALS(ph)PIHNSSALPTTGR ddPTM_HeLa_A486_30min_R1 3 DLELALSPIHNSSALPTTGR 20 0 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR ;; 228.18 7.61E-36 704780000 330043 402190 475660 32242.6 543590 214998 245511 259268 392190 95741 TRUE FALSE FALSE 306908.69 370318.9996 659848.2906 75062.40225 475407.8734 188473.7327 184081.551 200238.3362 426185.345 71766.83043 4.276469898 5.160030023 9.194335136 1.045920543 6.624339832 2.626195578 2.564994858 2.790123724 5.938472445 1 16.13102959 -5.271220024 24.98980112 3.390658251 6.105253649 0.297694641 2.087299498 883.8129008 2258163.329 0.570344358 0.857908699 5.36E-06 5.271220024 2.714595398 DLELPLS(ph)PSLLGGPGPER ddPTM_HeLa_A485_30min_R1 2 DLELPLSPSLLGGPGPER 18 0 P19419 P19419 ELK1 ETS domain-containing protein Elk-1 1 0 DLELPLS(0.887)PS(0.113)LLGGPGPER;DLELPLS(0.917)PS(0.083)LLGGPGPER ; 93.754 0.00060743 97789000 101972 124395 111058 102528 135973 111037 132395 134569 91504 126485 TRUE FALSE FALSE 124655.3196 138941.9132 152142.9757 108128.845 122435.0507 116850.7256 104107.7267 101565.7418 109868.0135 94954.61728 1.312788395 1.463245465 1.602270433 1.13874236 1.289405973 1.230595509 1.096394569 1.069624044 1.157058146 1 16.53495053 -5.968335969 0.760180678 1.070649513 1.456152854 0.631092489 0.107478356 0.455011348 0.584208486 0.068429088 0.092588403 1.08E-06 5.968335969 0.385503342 DLESCS(ph)DDDNQGSK ddPTM_HeLa_A485_30min_R1 1 DLESCSDDDNQGSK 14 0 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3;F8W895 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 1 0 DLESCS(1)DDDNQGSK 248.25 8.97E-42 0 148490 72598 68989 256770 138500 80622 147240 89139 102100 323640 TRUE FALSE FALSE 181521.0882 81087.70458 94510.90197 270796.6949 124710.4537 84843.24325 115780.9712 67277.52049 122590.5335 242962.5042 0.747115646 0.333745756 0.388993776 1.114561672 0.513290946 0.349203033 0.476538434 0.276904952 0.504565649 1 17.89037416 -9.889928461 5.784569174 1.000000183 0.516705829 0.272030303 0.234016914 5.72E-07 1.10E-07 0.234441556 0.056860407 1.29E-10 9.889928461 -0.483294354 DLESCS(ph)DDDNQGSK ddPTM_HeLa_A486_30min_R1 1 DLESCSDDDNQGSK 14 0 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3;F8W895 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 1 0 DLESCS(1)DDDNQGSK 346.42 7.24E-95 277210000 388000 568690 263710 236230 433380 670750 695450 614130 430480 668900 TRUE FALSE FALSE 360803.2036 523624.9333 365825.5744 549955.3784 379021.4393 587999.6847 521441.0543 474306.0054 467794.353 501403.0862 0.719587122 1.044319326 0.729603755 1.096832855 0.755921632 1.172708547 1.039963791 0.945957491 0.93297063 1 18.93561135 -5.265407573 24.92319782 0.989484009 0.852484997 0.230292872 0.133024651 541.3793204 3400270.228 0.035627047 0.055133331 5.43E-06 5.265407573 -0.136999012 DLFAFQES(ph)PPR ddPTM_HeLa_A485_30min_R1 1 DLFAFQESPPR 11 0 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 DLFAFQES(1)PPR 77.527 0.00876 22713000 8415.9 11674 7762.4 7429.3 11520 9833.8 9186.2 9810.4 8040.3 11283 TRUE FALSE FALSE 10287.98792 13039.17275 10634.03478 7835.143847 10373.02835 10348.68256 7223.493326 7404.384018 9653.91446 8470.355748 1.214587466 1.539389034 1.255441341 0.925007648 1.224627236 1.221753002 0.852796924 0.874152661 1.139729516 1 13.04820685 -5.054310688 5.270146448 1.03867902 1.383105613 0.492043975 0.144119657 0.165078738 10.03217121 0.040750699 0.074540571 8.82E-06 5.054310688 0.344426593 DLFAFQES(ph)PPR ddPTM_HeLa_A486_30min_R1 2 DLFAFQESPPR 11 0 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 DLFAFQES(1)PPR;DLFAFQES(1)PPR ; 83.087 0.0051857 68904000 72877 79433 63473 24087 87573 71242 74626 77752 69098 69787 TRUE FALSE FALSE 67768.69864 73138.43979 88051.44547 56075.75329 76588.77775 62452.88638 55953.78549 60049.56691 75087.47028 52311.88096 1.295474324 1.398122921 1.683201671 1.071950621 1.464079982 1.193856639 1.06961907 1.147914504 1.435380814 1 15.67485103 -5.934882907 1.163683377 1.173332202 1.421469462 0.242994431 0.179460729 0.699912527 2.00516765 0.079874531 0.098200086 1.16E-06 5.934882907 0.24813726 DLFDLNS(ph)S(ph)EEDDTEGFSER ddPTM_HeLa_A485_30min_R1 3 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 DLFDLNS(1)S(1)EEDDTEGFSER;DLFDLNS(1)S(1)EEDDTEGFSER;DLFDLNS(1)S(1)EEDDTEGFSER ;; 120.4 3.37E-05 5111815000 235179 264940 242952 275246 327673 261116 322398 337987 247818 355043 TRUE FALSE FALSE 287493.7572 295922.4283 332830.0549 290281.992 295048.7256 274787.63 253515.0336 255095.1583 297552.7995 266537.3142 1.0786248 1.110247656 1.248718424 1.089085755 1.106969681 1.030953699 0.951142748 0.957071092 1.116364515 1 18.02397799 -6.188347133 2.141436352 1.001348372 1.137778223 0.482287632 0.060546046 0.274935071 2.476683955 0.023862403 0.023069604 6.48E-07 6.188347133 0.136429852 DLFDLNS(ph)S(ph)EEDDTEGFSER ddPTM_HeLa_A486_30min_R1 4 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 DLFDLNS(1)S(1)EEDDTEGFSER;DLFDLNS(1)S(0.999)EEDDT(0.002)EGFSER;DLFDLNS(1)S(0.998)EEDDT(0.002)EGFSER;DLFDLNS(1)S(1)EEDDTEGFSER ;;; 163.78 4.68E-12 3488447000 424367 473528 347672 226364 484097 455557 541622 529107 395705 567561 TRUE FALSE FALSE 394621.0647 436003.9167 482299.9094 526986.8318 423377.0402 399355.0091 406102.4469 408640.8864 430005.028 425440.0314 0.927559787 1.024830492 1.133649572 1.23868652 0.995150924 0.938686959 0.954546862 0.960513483 1.010730059 1 18.69859626 -5.978468842 24.99978238 0.969018304 1.085406059 0.312576565 0.076360109 294.3419166 341758.1228 0.025563545 0.028983976 1.05E-06 5.978468842 0.116387755 DLFDLNS(ph)SEEDDTEGFSER ddPTM_HeLa_A485_30min_R1 3 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 DLFDLNS(0.919)S(0.081)EEDDTEGFSER;DLFDLNS(0.932)S(0.068)EEDDTEGFSER;DLFDLNS(0.5)S(0.5)EEDDTEGFSER ;; 406.55 2.43E-163 854277000 206700 232429 226851 259462 278227 234327 306485 271112 238189 293784 TRUE FALSE FALSE 252679.7019 259609.5497 310772.625 273635.7521 250525.743 246595.9994 241001.976 204621.3569 285991.3475 220549.0555 1.145684806 1.177105697 1.409086175 1.240702444 1.135918458 1.118100455 1.092736378 0.927781606 1.296724427 1 17.75074006 -5.915993669 2.62645778 1.083806394 1.250884792 0.312167254 0.109342382 0.33801261 4.733496573 0.036996803 0.042457642 1.21E-06 5.915993669 0.167078398 DLFDLNS(ph)SEEDDTEGFSER ddPTM_HeLa_A486_30min_R1 3 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 DLFDLNS(0.99)S(0.01)EEDDTEGFSER;DLFDLNS(0.918)S(0.082)EEDDTEGFSER;DLFDLNS(0.5)S(0.5)EEDDTEGFSER ;; 351.95 1.13E-115 586178000 385226 427127 277717 164093 431847 371104 430654 451467 369201 463627 TRUE FALSE FALSE 358223.6467 393279.901 385256.4599 382016.7968 377680.7224 325320.9616 322899.8142 348677.8196 401203.6399 347531.7815 1.030765144 1.131637225 1.108550298 1.099228379 1.086751608 0.936089817 0.929123123 1.00329765 1.154437267 1 18.40678539 -6.134791229 7.560435957 1.000251497 1.09597583 0.326031984 0.062182378 0.323812856 18.46715879 0.021498522 0.021525106 7.33E-07 6.134791229 0.095724333 DLFDYS(ph)PPLHK ddPTM_HeLa_A485_30min_R1 6 DLFDYSPPLHK 11 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK ;;;;; 121.76 8.40E-05 20197900000 2558870 1624310 1909890 4429160 3449680 1970700 3032540 2285660 2413720 5352830 TRUE FALSE FALSE 3128081.804 1814258.925 2616437.788 4671113.796 3106217.747 2073882.805 2384613.055 1725098.301 2898131.464 4018467.993 0.778426457 0.451480248 0.651103304 1.162411597 0.772985564 0.516087924 0.593413475 0.429292532 0.721203073 1 21.93821416 -6.237351048 23.49408614 0.61266856 0.761900958 0.046636564 0.217846876 957.1434166 933530.2006 0.074363822 0.074312654 5.79E-07 6.237351048 0.149232398 DLFDYS(ph)PPLHK ddPTM_HeLa_A486_30min_R1 10 DLFDYSPPLHK 11 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDY(0.047)S(0.953)PPLHK;DLFDYS(1)PPLHK;DLFDYS(1)PPLHK;DLFDY(0.001)S(0.999)PPLHK;DLFDYS(1)PPLHK ;;;;;;;;; 131.53 2.81E-05 33105986000 2462592 4387780 2537017 2047219 4251589 4799145 5152445 5142574 3567224 4054084 TRUE FALSE FALSE 2289977.018 4040076.333 3519417.926 4766029.293 3718315.063 4207075.284 3863248.764 3971722.162 3876433.849 3038914.979 0.753550867 1.329446977 1.158116614 1.568332555 1.223566664 1.384400457 1.271259246 1.306954025 1.275597993 1 21.53512488 -4.25923602 24.49089935 1.29580167 0.753550614 0.557350056 0.140022655 100.3326657 1115121.326 0.031960021 0.204554616 5.51E-05 4.25923602 -0.542251057 DLFNGLDS(ph)EEEKDGEEK ddPTM_HeLa_A485_30min_R1 2 DLFNGLDSEEEKDGEEK 17 1 Q96S90;Q96S90-2 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 DLFNGLDS(1)EEEKDGEEK;DLFNGLDS(1)EEEKDGEEK ; 179.42 7.77E-18 140649000 77239 33433 25467 244980 68068 49000 107130 67844 39812 311870 TRUE FALSE FALSE 94420.54908 37342.69852 34888.30307 258362.6371 61290.91092 51565.56423 84240.80033 51205.15262 47801.90322 234126.5485 0.403288519 0.159497924 0.149014724 1.103517045 0.261785395 0.220246549 0.359808834 0.21870716 0.204171221 1 17.83692901 -10.13867969 4.512799058 1.000082233 0.344490875 0.354154905 0.266464603 140940678.2 79161165.22 111189.2582 0.066089109 7.27E-11 10.13867969 -0.655591358 DLFNGLDS(ph)EEEKDGEEK ddPTM_HeLa_A486_30min_R1 2 DLFNGLDSEEEKDGEEK 17 1 Q96S90;Q96S90-2 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 DLFNGLDS(1)EEEKDGEEK;DLFNGLDS(1)EEEKDGEEK ; 201.15 2.30E-25 235441000 111269 100626 27492.9 140229 57711 173217 221920 171506 70988 426560 TRUE FALSE FALSE 103469.6177 92652.02929 38138.88717 326460.1988 50472.34825 151847.2477 166393.2688 132457.8277 77141.297 319746.5996 0.323598806 0.289767051 0.119278476 1.020996624 0.157851087 0.47489871 0.52039105 0.414258753 0.241257599 1 18.28656949 -10.11251618 4.151336583 1.000098497 0.402480477 0.358640503 0.242242568 172436138.6 316054479.1 283060.7105 0.060389419 7.72E-11 10.11251618 -0.597618019 DLFSLDSEDPSPAS(ph)PPLR ddPTM_HeLa_A485_30min_R1 6 DLFSLDSEDPSPASPPLR 18 0 H3BTX0;Q9BTK6 H3BTX0 PAGR1 PAXIP1-associated glutamate-rich protein 1 1 0 DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPSPAS(1)PPLR ;;;;; 268.55 1.73E-58 2224950000 656485 869886 827852 710737 1007116 812055 969709 1052095 749515 926031 TRUE FALSE FALSE 802517.8234 971611.6007 1134108.905 749562.7626 906843.9948 854572.9441 762522.7504 794067.0516 899935.7855 695188.514 1.154388784 1.397623207 1.631368876 1.078215114 1.304457678 1.229267928 1.096857521 1.142232697 1.294520504 1 19.40704472 -5.28757847 24.94009753 1.17539459 1.394776683 0.362558424 0.139640922 796.8312073 760279.031 0.039240186 0.058225354 5.16E-06 5.28757847 0.219382093 DLFSLDSEDPSPAS(ph)PPLR ddPTM_HeLa_A486_30min_R1 7 DLFSLDSEDPSPASPPLR 18 0 H3BTX0;Q9BTK6 H3BTX0 PAGR1 PAXIP1-associated glutamate-rich protein 1 1 0 DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPS(0.007)PAS(0.993)PPLR;DLFSLDSEDPS(0.009)PAS(0.991)PPLR ;;;;;; 356.31 1.63E-115 2027943000 2016990 2084869 1685201 740767.9 2384648 1899635 2160631 2247330 1786343 2269744 TRUE FALSE FALSE 1875609.417 1919656.387 2337755.958 1724545.108 2085543.212 1665277.348 1620018.271 1735662.018 1941184.65 1701385.329 1.102401311 1.128290197 1.374030867 1.013612307 1.225791228 0.978777305 0.952175997 1.020146341 1.140943569 1 20.69827849 -6.265922248 24.93715647 1.015528245 1.169350618 0.368501833 0.09841633 418.1471714 2326044.869 0.033979076 0.03100216 5.42E-07 6.265922248 0.153822373 DLGAPEGIS(ph)S(ph)GS(ph)K ddPTM_HeLa_A486_30min_R1 1 DLGAPEGISSGSK 13 0 Q86VF2-5 Q86VF2-5 3 0 DLGAPEGIS(1)S(1)GS(1)K 55.261 0.0050602 0 896750 1123500 901360 48344 1271800 897010 731580 905200 935510 328810 TRUE FALSE FALSE 833892.4558 1034469.768 1250390.731 112547.2752 1112278.985 786346.0263 548530.9461 699105.7204 1016600.76 246473.8358 3.383289967 4.197077409 5.073117506 0.456629706 4.512766969 3.190383368 2.225513894 2.83642975 4.124578809 1 17.91107498 -9.863639631 0.225263209 1.11E-28 3.806671691 0.223587983 1.260448569 25.83706601 1.428440478 24.99067508 2.855383554 1.37E-10 9.863639631 3.806671691 DLGEGEEGELAPPEDLLGRPQALS(ph)R ddPTM_HeLa_A485_30min_R1 1 DLGEGEEGELAPPEDLLGRPQALSR 25 1 Q8NC44;H7C3D5 Q8NC44 FAM134A Protein FAM134A 1 0 DLGEGEEGELAPPEDLLGRPQALS(1)R 126.36 3.44E-06 43170000 35170 38434 31712 33519 37223 31264 36662 51558 31987 53079 TRUE FALSE FALSE 42993.44516 42928.52197 43443.58845 35350.0581 33516.94742 32900.9347 28828.8642 38913.31966 38406.4975 39847.38215 1.078952816 1.077323519 1.0902495 0.887136273 0.841132983 0.825673681 0.723482012 0.976559 0.963839917 1 15.28219733 -5.274924181 6.895197659 0.875467466 1.082099876 0.562683939 0.077783795 0.110653374 29.26135739 0.02294567 0.035850789 5.31E-06 5.274924181 0.206632409 DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_HeLa_A485_30min_R1 3 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 0 DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI ;; 376.22 1.38E-170 4644760000 156460 118363 111058 230049 204600 157812 242146 229944 128622 307561 TRUE FALSE FALSE 191263.9872 132204.5232 152142.9757 242615.9944 184229.3056 166074.7923 190409.5289 173549.8735 154435.2556 230891.7029 0.828370984 0.572582391 0.658936522 1.050778314 0.797903533 0.719275705 0.824670296 0.751650541 0.668864466 1 17.81685681 -11.41829806 2.284302407 3.125464436 0.764555752 0.250841023 0.12251711 4598762.447 757861.9013 50215346.42 0.032100753 3.82E-12 11.41829806 -2.360908684 DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_HeLa_A486_30min_R1 4 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 0 DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;DLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI ;;; 419.76 2.09E-241 10042510000 1136025 1294153 749293 704430 1434513 1540827 1835484 1755250 1029227 1795766 TRUE FALSE FALSE 1056395.514 1191599.603 1039439.316 1639948.64 1254583.003 1350735.431 1376226.489 1355617.892 1118441.225 1346094.505 0.784785548 0.885227299 0.77218896 1.218301266 0.93201703 1.003447697 1.022384747 1.007074828 0.83087868 1 20.36034827 -5.200032206 24.99999946 1.000302936 0.821183113 0.453289411 0.094478201 219.0334482 89171.94503 0.024779324 0.042919041 6.31E-06 5.200032206 -0.179119823 DLGMMIHEQGDVIDS(ph)IEANVENAEVHVQQANQQLSR ddPTM_HeLa_A485_30min_R1 1 DLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR 36 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 0 DLGMMIHEQGDVIDS(1)IEANVENAEVHVQQANQQLSR 89.51 5.20E-05 12781000 12236 10178 7071.1 11206 10088 8106.5 12206 9012.6 8894.8 19707 TRUE FALSE FALSE 14957.85599 11368.22856 9686.994143 11818.1554 9083.603299 8530.943805 9598.088386 6802.245719 10679.90477 14794.40758 1.011047986 0.768413909 0.654774048 0.798825863 0.613988985 0.576633012 0.648764632 0.459784934 0.721887964 1 13.85276431 DLGMMIHEQGDVIDS(ph)IEANVENAEVHVQQANQQLSR ddPTM_HeLa_A486_30min_R1 1 DLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR 36 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 0 DLGMMIHEQGDVIDS(1)IEANVENAEVHVQQANQQLSR 115.37 5.72E-05 14529000 3220.2 3023.3 3083.9 1418.8 4173 3298.3 3779.8 2445.9 3606.5 3145 TRUE FALSE FALSE 2994.480609 2783.722697 4278.06867 3303.038102 3649.583428 2891.389281 2834.054061 1889.021964 3919.114324 2357.471529 1.270208599 1.180808617 1.81468519 1.401093528 1.54809226 1.226478982 1.20215834 0.801291528 1.662422759 1 11.20302463 -6.423654154 4.349630194 1.156477163 1.445981872 0.211219636 0.256738569 0.362457522 11.68691547 0.092432092 0.079796767 3.77E-07 6.423654154 0.289504709 DLGNPNT(ph)APPT(ph)PELHGINPVFLSSNPSR ddPTM_HeLa_A485_30min_R1 1 DLGNPNTAPPTPELHGINPVFLSSNPSR 28 0 J3KQH6;P78364 J3KQH6 PHC1 Polyhomeotic-like protein 1 2 0 DLGNPNT(1)APPT(0.999)PELHGINPVFLSSNPSR 50.942 0.022476 43322000 64932 69150 77058 80505 90404 81615 106250 105450 68013 104620 TRUE FALSE FALSE 79375.89939 77236.49097 105564.9609 84902.7843 81403.06033 85888.2352 83548.81952 79588.22216 81662.58525 78540.15939 1.010640926 0.983401251 1.344088956 1.081011103 1.036451428 1.093558198 1.063771963 1.013344291 1.039755787 1 16.26114291 -6.985070929 0.948280417 1.009947304 1.101963977 0.111400999 0.092791604 1.387525556 2.321127445 0.080924378 0.03906304 1.03E-07 6.985070929 0.092016673 DLGSTEDGDGT(ph)DDFLT(ph)DKEDEK ddPTM_HeLa_A485_30min_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 2 0 DLGSTEDGDGT(0.999)DDFLT(1)DKEDEK 161.39 7.84E-17 0 226870 145220 79287 494010 170760 168480 347850 283330 117780 636310 TRUE FALSE FALSE 277336.4488 162202.2158 108618.5607 520996.5154 153758.5348 177301.3523 273529.0058 213842.8733 141417.3657 477689.6274 0.580578754 0.339555658 0.227383126 1.09065905 0.321879576 0.371164334 0.572608217 0.447660701 0.296044456 1 18.86571402 -10.17042473 4.217192084 1.000166213 0.473926832 0.314734998 0.233735157 630038137.1 1304600655 1435888.324 0.057693625 6.75E-11 10.17042473 -0.526239382 DLGSTEDGDGT(ph)DDFLT(ph)DKEDEK ddPTM_HeLa_A486_30min_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 2 0 DLGSTEDGDGT(1)DDFLT(1)DKEDEK 140.09 1.73E-07 489540000 125310 125740 43051 133940 75281 181950 256810 214320 94065 400570 TRUE FALSE FALSE 116526.4161 115775.9045 59721.50015 311819.089 65838.55501 159502.8589 192553.4217 165524.0146 102218.6299 300264.6647 0.388079018 0.385579517 0.198896198 1.038480799 0.219268408 0.531207557 0.641278993 0.551260385 0.340428435 1 18.19587518 -14 0.276664126 4.643122208 0.450355474 0.311094326 0.231123721 276.5551706 2.666909241 578.3043196 0.267269373 1.00E-14 14 -4.192766734 DLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_HeLa_A485_30min_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGSTEDGDGT(1)DDFLTDKEDEK 304.06 8.88E-88 469080000 297240 178660 105320 649850 245120 274010 509410 422380 195980 1001000 TRUE FALSE FALSE 363360.0125 199552.7329 144282.2507 685349.66 220714.9921 288356.7399 400570.392 318790.6427 235311.3884 751469.122 0.483532858 0.265550143 0.192000239 0.912013069 0.293711326 0.383724003 0.533049703 0.424223209 0.31313514 1 19.5193543 -10.93179541 2.559646399 1.385445663 0.423737962 0.452475464 0.190631607 46428101.05 23417909.58 106900537.5 0.047748363 1.17E-11 10.93179541 -0.961707701 DLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_HeLa_A486_30min_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGSTEDGDGT(1)DDFLTDKEDEK 232.06 1.16E-36 705150000 255380 228800 62293 211620 163130 356190 507270 422410 189540 732140 TRUE FALSE FALSE 237479.1808 210669.0547 86414.51786 492662.0547 142668.7143 312246.8993 380345.6806 326236.4641 205969.4798 548807.3786 0.432718637 0.383867023 0.157458739 0.897695756 0.259961363 0.568955359 0.693040392 0.594446206 0.375303773 1 19.06594035 -14 0.142512908 2.722651255 0.317618429 0.377522041 0.20183025 146.393049 1.266928366 71.95505158 1.161378934 1.00E-14 14 -2.405032826 DLGSTEDGDGTDDFLT(ph)DKEDEK ddPTM_HeLa_A485_30min_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGSTEDGDGTDDFLT(1)DKEDEK 140.31 2.18E-07 223880000 217180 144260 65639 485820 145790 148170 321050 258600 108800 596880 TRUE FALSE FALSE 265490.9417 161129.9521 89921.59757 512359.1164 131274.6357 155927.9521 252455.0448 195177.9445 130635.162 448088.8008 0.592496267 0.359593794 0.200678074 1.143432096 0.29296567 0.347984488 0.563404049 0.435578716 0.291538556 1 18.77342514 -10.51490433 2.907355084 1.020480341 0.471372117 0.282945077 0.253229119 78783371.86 86444103.37 12820397.36 0.063440643 3.06E-11 10.51490433 -0.549108223 DLGSTEDGDGTDDFLT(ph)DKEDEK ddPTM_HeLa_A486_30min_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGSTEDGDGTDDFLT(1)DKEDEK 262.78 2.59E-59 382350000 380850 316250 110500 430310 200730 477940 734150 546420 262330 1080800 TRUE FALSE FALSE 354154.3817 291189.1982 153288.5593 1001783.427 175552.5717 418976.6221 550457.905 422012.0943 285068.9756 810160.6452 0.437140935 0.359421554 0.18920761 1.236524426 0.216688595 0.517152524 0.679442908 0.520899277 0.351867222 1 19.62784848 -10.8795657 2.693023306 1.233372531 0.507187412 0.218980287 0.282534619 39032671.98 24020925.74 58053847.43 0.072040955 1.32E-11 10.8795657 -0.726185119 DLGSTEDGDGTDDFLT(ph)DKEDEKAKPPR ddPTM_HeLa_A486_30min_R1 2 DLGSTEDGDGTDDFLTDKEDEKAKPPR 27 3 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGSTEDGDGT(0.001)DDFLT(0.999)DKEDEKAKPPR;DLGSTEDGDGTDDFLT(1)DKEDEKAKPPR ; 182.91 1.45E-20 362950000 159486 119657 38690 326598 168796 252186 541801 461677 113799 511310 TRUE FALSE FALSE 148306.855 110174.9435 53671.80415 760336.6493 147624.0317 221073.8554 406236.6592 356563.2254 123663.1889 383274.6479 0.386946686 0.287456904 0.14003484 1.983790615 0.385165136 0.576802709 1.059910071 0.930307359 0.322649018 1 18.54801905 DLGYIYFYQR ddPTM_HeLa_A486_30min_R1 1 DLGYIYFYQR 10 0 P45974;P45974-2 P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 0 110.87 0.0098347 10621000 11249 16228 13783 6736.6 16237 14233 16410 16434 14193 17645 FALSE FALSE TRUE 10460.50319 14942.03418 19120.14672 15683.14525 14200.40406 12477.07717 12304.04443 12692.33695 15423.26067 13226.57715 0.790870009 1.12969773 1.445585393 1.185729692 1.073626524 0.943333791 0.930251591 0.959608583 1.166081027 1 13.69115214 -5.988120364 4.417926811 0.993612524 1.157976061 0.136463949 0.16022081 0.375907726 18.17509293 0.055214498 0.060352156 1.03E-06 5.988120364 0.164363537 DLHILPPPLIPT(ph)PPPDDPR ddPTM_HeLa_A485_30min_R1 3 DLHILPPPLIPTPPPDDPR 19 0 Q9NRS6;E9PK26;E9PMW6;Q9NRS6-2 Q9NRS6 SNX15 Sorting nexin-15 1 0 DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR ;; 73.546 0.005747 194370000 68995 89863 84982 65588 103675 80962 92708 88800 77859 90792 TRUE FALSE FALSE 84342.69972 100371.6961 116420.3782 69170.90636 93352.75297 85201.04513 72900.17845 67021.66077 93484.58713 68159.2253 1.237436302 1.472606176 1.708064868 1.014842907 1.369627553 1.250029541 1.069557028 0.98331019 1.371561762 1 16.05662132 -5.826817473 0.990805268 1.117682206 1.443317417 0.290710967 0.190203659 0.69094295 1.462684646 0.091095133 0.131760483 1.49E-06 5.826817473 0.325635211 DLHILPPPLIPT(ph)PPPDDPR ddPTM_HeLa_A486_30min_R1 6 DLHILPPPLIPTPPPDDPR 19 0 Q9NRS6;E9PK26;E9PMW6;Q9NRS6-2 Q9NRS6 SNX15 Sorting nexin-15 1 0 DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR ;;;;; 80.07 0.0032316 416949000 150583.5 160177.9 143044.3 53735.6 195336.7 138961.2 166706.7 166314.3 141401.4 167992.8 TRUE FALSE FALSE 140028.3743 147484.8198 198434.8838 125099.1924 170835.7496 121817.58 124994.9204 128448.1645 153658.1872 125926.3094 1.111986644 1.171199414 1.575801631 0.993431738 1.356632704 0.967371954 0.992603698 1.020026435 1.220223065 1 16.94222021 -6.26887112 24.98825174 1.038331597 1.242643844 0.289043816 0.158204009 769.5613239 2587540.666 0.054348979 0.048849513 5.38E-07 6.26887112 0.204312248 DLHQGIEAAS(ph)DEEDLR ddPTM_HeLa_A485_30min_R1 2 DLHQGIEAASDEEDLR 16 0 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DLHQGIEAAS(1)DEEDLR;DLHQGIEAAS(1)DEEDLR ; 198.1 3.29E-25 855050000 315530 395300 358740 363480 365350 362380 364770 377190 318660 497190 TRUE FALSE FALSE 385718.5599 441526.8963 491452.8544 383335.992 328974.4712 381353.6565 286833.9096 284683.5611 382612.1391 373249.6831 1.033406262 1.18292638 1.316686595 1.027022954 0.881379104 1.021711936 0.768477302 0.762716149 1.025083627 1 18.50978151 -5.526789461 4.385366523 0.898614724 1.179342476 0.547347271 0.108618097 0.146146732 6.969903412 0.03292589 0.045813242 2.97E-06 5.526789461 0.280727752 DLHQGIEAAS(ph)DEEDLR ddPTM_HeLa_A486_30min_R1 1 DLHQGIEAASDEEDLR 16 0 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DLHQGIEAAS(1)DEEDLR 125.04 2.07E-06 0 56661 65910 47549 35070 58852 65764 69167 61507 58979 80329 TRUE FALSE FALSE 52689.3565 60687.05156 65961.24621 81644.73234 51470.23339 57650.70632 51860.68503 47503.19879 64091.34721 60214.09555 0.875033595 1.007854573 1.095445271 1.35590731 0.854787121 0.957428751 0.861271511 0.788904962 1.064391097 1 15.87781363 DLHQGIEAAS(ph)DEEDLRWWR ddPTM_HeLa_A485_30min_R1 1 DLHQGIEAASDEEDLRWWR 19 1 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DLHQGIEAAS(1)DEEDLRWWR 156.78 2.36E-09 115180000 52602 48191 62230 35472 72791 62600 55903 73949 49384 44528 TRUE FALSE FALSE 64303.13343 53826.51824 85251.46661 37409.74554 65543.67246 65877.6392 43958.86736 55812.8918 59294.91582 33427.98908 1.92363152 1.610223042 2.550301976 1.119114448 1.960742308 1.97073294 1.315031762 1.669645508 1.773810434 1 15.02876895 -11.20679231 0.185665314 4.11E-12 1.971483371 0.306380142 0.363333853 49.51509848 1.246358041 22.49139018 1.170889227 6.21E-12 11.20679231 1.971483371 DLHQGIEAAS(ph)DEEDLRWWR ddPTM_HeLa_A486_30min_R1 1 DLHQGIEAASDEEDLRWWR 19 1 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DLHQGIEAAS(1)DEEDLRWWR 89.197 0.00031534 142470000 50553 66161 66372 17088 93473 64237 56144 73929 60902 42092 TRUE FALSE FALSE 47009.49576 60918.16141 92073.0159 39781.72758 81748.74474 56312.09205 42096.17737 57096.98056 66181.0344 31551.88923 1.489910649 1.93072944 2.918145891 1.260835042 2.590930266 1.784745492 1.334188805 1.809621609 2.097530006 1 14.94543877 -6.514469167 24.53806897 1.61804118 2.052852006 0.153488851 0.522161771 658.0212462 1920034.381 0.187777448 0.152854052 3.06E-07 6.514469167 0.434810826 DLHS(ph)DDNEEES(ph)DEVEDNDNDS(ph)EMERPVNR ddPTM_HeLa_A486_30min_R1 1 DLHSDDNEEESDEVEDNDNDSEMERPVNR 29 1 A0A0D9SF09;B1APT5;P42568-2;P42568 A0A0D9SF09 MLLT3 Protein AF-9 3 0 DLHS(1)DDNEEES(1)DEVEDNDNDS(1)EMERPVNR 212.72 6.08E-29 428810000 47379 54958 55723 23264 58741 60175 56274 61406 52138 58897 TRUE FALSE FALSE 44057.97677 50602.92793 77300.43791 54159.7677 51373.15604 52751.22031 42193.64999 47425.19428 56657.36382 44148.80784 0.997942615 1.146190133 1.750906575 1.22675493 1.163636314 1.194850391 0.955714368 1.074212342 1.283327152 1 15.43008686 -5.817193201 2.827209535 1.104048669 1.307676133 0.15235081 0.199059165 0.5048442 8.224750251 0.068469229 0.082942089 1.52E-06 5.817193201 0.203627464 DLHS(ph)DDNEEES(ph)DEVEDNDNDSEMERPVNR ddPTM_HeLa_A485_30min_R1 1 DLHSDDNEEESDEVEDNDNDSEMERPVNR 29 1 A0A0D9SF09;B1APT5;P42568-2;P42568 A0A0D9SF09 MLLT3 Protein AF-9 2 0 DLHS(1)DDNEEES(1)DEVEDNDNDSEMERPVNR 170.8 7.97E-14 462890000 11713 15741 17676 12397 16890 14224 18724 19302 13261 17953 TRUE FALSE FALSE 14318.51644 17581.77302 24215.08796 13074.21672 15208.3723 14968.74665 14723.46444 14568.15424 15922.36106 13477.6475 1.06238989 1.304513493 1.796685064 0.970066677 1.128414458 1.110634971 1.092435786 1.080912246 1.181390229 1 13.71828108 DLIDNS(ph)FNR ddPTM_HeLa_A485_30min_R1 2 DLIDNSFNR 9 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 DLIDNS(1)FNR;DLIDNS(1)FNR ; 142.97 0.0001137 328570000 314980 337990 316990 349760 470940 348390 390010 384420 326160 441530 TRUE FALSE FALSE 385046.2143 377514.9904 434257.7921 368866.5032 424051.56 366631.1617 306681.1774 290140.3923 391617.3203 331464.6968 1.161650752 1.138929708 1.310117778 1.112837979 1.279326469 1.106094149 0.92523029 0.875328188 1.181475204 1 18.3384957 -6.549233589 5.192693822 0.986865466 1.198359692 0.520307348 0.092574773 0.14123855 10.36071284 0.034558464 0.027200747 2.82E-07 6.549233589 0.211494226 DLIDNS(ph)FNR ddPTM_HeLa_A486_30min_R1 2 DLIDNSFNR 9 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 DLIDNS(1)FNR;DLIDNS(1)FNR ; 199.12 9.84E-10 870160000 365980 409260 341970 145484 489230 376150 422720 444370 344010 414890 TRUE FALSE FALSE 340326.6919 376828.7471 474389.9423 338694.1044 427866.2115 329744.4374 316950.9849 343196.6515 373829.0638 310998.8435 1.094302114 1.211672503 1.525375262 1.089052617 1.375780716 1.060275446 1.01913879 1.103530314 1.202027183 1 18.24654969 -6.281923879 24.31099574 1.079848995 1.261925004 0.329490656 0.129926832 710.1562004 842809.8078 0.045397909 0.040088747 5.22E-07 6.281923879 0.182076009 DLIEDSSVQKDGLNQTTIPVS(ph)PPSTTKPSR ddPTM_HeLa_A485_30min_R1 2 DLIEDSSVQKDGLNQTTIPVSPPSTTKPSR 30 2 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DLIEDSSVQKDGLNQTTIPVS(0.999)PPSTTKPSR;DLIEDSSVQKDGLNQTT(0.002)IPVS(0.994)PPS(0.001)T(0.002)T(0.002)KPSR ; 175.39 3.32E-15 1397700000 503640 724720 312880 358950 704030 956340 1229110 1833840 478070 515040 TRUE FALSE FALSE 615672.9805 809469.6998 428627.332 378558.5296 633934.3012 1006412.484 966500.6076 1384087.865 574014.2639 386650.0066 1.592326316 2.093546323 1.108566726 0.979072865 1.639555904 2.602903056 2.499678239 3.579691817 1.484583613 1 18.56066871 -6.16597091 4.990813964 2.409191436 1.451283951 0.201770568 0.709953716 0.293877341 11.81047528 0.232858123 0.2326788 6.82E-07 6.16597091 -0.957907485 DLIEDSSVQKDGLNQTTIPVS(ph)PPSTTKPSR ddPTM_HeLa_A486_30min_R1 2 DLIEDSSVQKDGLNQTTIPVSPPSTTKPSR 30 2 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DLIEDSSVQKDGLNQTTIPVS(0.998)PPS(0.001)T(0.001)T(0.001)KPSR;DLIEDSSVQKDGLNQT(0.001)T(0.001)IPVS(0.995)PPS(0.001)T(0.001)T(0.001)KPSR ; 208.49 1.80E-29 527030000 635560 336080 189390 227900 475030 365160 670230 641490 213219 773780 TRUE FALSE FALSE 591010.526 309447.7968 262726.88 530562.7174 415447.3079 320110.2719 502531.365 495436.7306 231700.9946 580020.4515 1.018947736 0.533511872 0.452961407 0.914731051 0.716263206 0.551894801 0.866402838 0.854171141 0.399470388 1 19.14574425 -10.79117599 2.704993565 1.081555677 0.700441166 0.167336265 0.200138494 91363657.63 69195268.44 49135492.58 0.054096549 1.62E-11 10.79117599 -0.381114511 DLISLDS(ph)SPAKER ddPTM_HeLa_A485_30min_R1 1 DLISLDSSPAKER 13 1 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLIS(0.002)LDS(0.499)S(0.499)PAKER 50.188 0.026175 221950000 179510 166460 133260 246090 246080 225730 329020 340900 169420 328310 TRUE FALSE FALSE 219441.3802 185926.049 182558.4194 259533.2736 221579.4112 237548.8738 258722.1892 257293.7405 203421.04 246468.3591 0.890343008 0.754360721 0.740697184 1.053008486 0.899017675 0.96381083 1.04971766 1.043921992 0.825343426 1 17.91104292 -5.256732314 24.99943761 0.977538683 0.79105634 0.538546679 0.076860014 297.1149337 1577984.993 0.020898307 0.034748085 5.54E-06 5.256732314 -0.186482343 DLISLDS(ph)SPAKER ddPTM_HeLa_A486_30min_R1 1 DLISLDSSPAKER 13 1 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLIS(0.001)LDS(0.535)S(0.464)PAKER 47.545 0.029759 159870000 128010 113660 65418 74823 129320 133740 183110 176150 84962 192040 TRUE FALSE FALSE 119037.16 104653.1677 90749.60155 174191.7253 113099.4797 117240.5186 137293.9413 136044.4903 92326.57457 143951.934 0.826922965 0.727000775 0.630415994 1.21006867 0.785675305 0.814442122 0.953748501 0.945068861 0.641370852 1 17.13522765 DLISLDSS(ph)PAKER ddPTM_HeLa_A485_30min_R1 1 DLISLDSSPAKER 13 1 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLISLDS(0.271)S(0.729)PAKER 79.317 0.0027718 205580000 140000 147420 107550 203460 217190 186500 307920 270150 130330 279700 TRUE FALSE FALSE 171142.517 164659.4866 147337.2205 214574.5046 195565.801 196264.8516 242130.3765 203895.2889 156486.0355 209975.9375 0.815057759 0.784182648 0.701686214 1.021900448 0.931372439 0.934701633 1.153133923 0.971041212 0.745256992 1 17.67986448 -5.263935187 24.99178374 0.96926955 0.768696248 0.459112395 0.098598151 199.5058424 1997760.383 0.028287101 0.044284665 5.45E-06 5.263935187 -0.200573302 DLISLDSS(ph)PAKER ddPTM_HeLa_A486_30min_R1 1 DLISLDSSPAKER 13 1 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLISLDS(0.212)S(0.788)PAKER 81.148 0.0022656 225620000 162000 158510 92576 108280 186920 194240 249470 235600 126800 270890 TRUE FALSE FALSE 150644.6366 145949.0903 128423.9065 252081.3122 163474.7506 170276.6437 187049.9674 181959.0231 137791.1261 203057.3808 0.741882102 0.718757869 0.63245131 1.241428956 0.805066775 0.838564168 0.92116803 0.896096573 0.678582209 1 17.63152794 DLLDDLKSELTGK ddPTM_HeLa_A485_30min_R1 1 DLLDDLKSELTGK 13 1 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 0 116.84 0.0002197 49207000 58160 42709 28656 98958 63910 64038 114480 88113 52380 137790 FALSE FALSE TRUE 71097.49135 47703.44603 39257.04688 104363.825 57546.896 67390.93066 90020.41278 66503.14859 62892.18554 103441.4888 0.687320843 0.461163568 0.379509685 1.008916501 0.556323161 0.651488406 0.870254419 0.642905949 0.607997683 1 16.65845542 -14 0.107539682 2.048121216 0.454334961 0.278438619 0.171423379 235.4768358 1.690660488 55.35256848 2.358377606 1.00E-14 14 -1.593786255 DLLDDLKSELTGK ddPTM_HeLa_A486_30min_R1 2 DLLDDLKSELTGK 13 1 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 146.96 1.05E-07 72182000 121523 123328 48535 82795 193938 175311 213379 193756 101855 231560 FALSE FALSE TRUE 113004.8652 113555.0401 67329.05181 192750.9442 169612.4876 153682.9113 159989.3173 149641.9885 110683.8734 173575.8688 0.651040182 0.654209833 0.387894079 1.11047086 0.977166289 0.8853933 0.921725574 0.862112859 0.637668555 1 17.40520687 -5.259845133 24.9999921 0.909583763 0.573364215 0.590871771 0.133037929 105.6961585 1657450.161 0.037770075 0.061216179 5.50E-06 5.259845133 -0.336219548 DLLEEEEAWEASHKNDLQDTEIS(ph)PR ddPTM_HeLa_A485_30min_R1 3 DLLEEEEAWEASHKNDLQDTEISPR 25 1 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 DLLEEEEAWEASHKNDLQDT(0.142)EIS(0.858)PR;DLLEEEEAWEASHKNDLQDTEIS(1)PR;DLLEEEEAWEASHKNDLQDTEIS(1)PR ;; 315.15 1.28E-105 766610000 529210 426180 310470 588750 451990 496900 602580 531890 379418 705680 TRUE FALSE FALSE 646930.9387 476018.0437 425325.7727 620911.9217 406988.2886 522916.9156 473833.8604 401443.1435 455563.7124 529766.9631 1.221161348 0.898542334 0.802854467 1.172047268 0.768240221 0.987069697 0.894419421 0.75777308 0.85993228 1 19.01499835 -4.261247846 22.75480922 0.900157503 1.221161552 0.391023033 0.118424354 4.477864081 530464.1895 0.028550957 0.160592088 5.48E-05 4.261247846 0.32100405 DLLEEEEAWEASHKNDLQDTEIS(ph)PR ddPTM_HeLa_A486_30min_R1 3 DLLEEEEAWEASHKNDLQDTEISPR 25 1 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 DLLEEEEAWEASHKNDLQDT(0.001)EIS(0.999)PR;DLLEEEEAWEASHKNDLQDT(0.001)EIS(0.999)PR;DLLEEEEAWEASHKNDLQDT(0.018)EIS(0.982)PR ;; 337.53 2.12E-123 889280000 371628 377545 192211 149144 274475 385172 417589 365566 311145 531320 TRUE FALSE FALSE 345578.7963 347626.9592 266640.2468 347214.7693 240047.7861 337653.3948 313103.8154 282334.602 338115.2991 398274.0137 0.867691048 0.872833645 0.669489441 0.871798705 0.602720182 0.847791679 0.786151756 0.708895364 0.848951444 1 18.60340183 -8.033433373 9.778648728 0.999999684 0.777805219 0.368457937 0.088344986 1.085532287 317.3825238 0.08174389 0.021119329 9.26E-09 8.033433373 -0.222194466 DLLHNEDRHDDYFQER ddPTM_HeLa_A485_30min_R1 1 DLLHNEDRHDDYFQER 16 1 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 203.99 2.65E-25 378540000 100420 140720 130970 102760 167490 132480 159610 176390 130300 134940 FALSE FALSE TRUE 122758.0826 157175.9799 179421.2531 108373.5186 150814.1075 139416.4479 125508.0196 133130.0759 156450.0148 101301.9414 1.21180385 1.551559405 1.771153155 1.069806927 1.488758314 1.376246556 1.238949796 1.314190766 1.544393056 1 16.6283023 -12.41877626 0.270419259 1.08E-12 1.430326754 0.263066574 0.193675008 113.309639 2.401288668 64.08007963 0.244996281 3.81E-13 12.41877626 1.430326754 DLLHNEDRHDDYFQER ddPTM_HeLa_A486_30min_R1 2 DLLHNEDRHDDYFQER 16 1 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 ; ; 142.39 8.27E-08 599690000 90360 93129 87318 36302 142380 97495 108860 116683 76405 102812 FALSE FALSE TRUE 84026.23062 85749.11887 121129.8681 84512.8906 124521.3728 85467.05816 81622.0766 90116.82807 83027.84692 77067.20601 1.09029813 1.11265379 1.571743344 1.096612878 1.61575045 1.108993859 1.059102578 1.169327821 1.077343415 1 16.23382947 -6.483261738 24.99178206 1.089624432 1.298346526 0.271179013 0.175903678 746.2965808 470790.2767 0.060665958 0.053493733 3.29E-07 6.483261738 0.208722094 DLLHPS(ph)PEEEK ddPTM_HeLa_A485_30min_R1 5 DLLHPSPEEEK 11 0 P42677 P42677 RPS27 40S ribosomal protein S27 1 0 DLLHPS(1)PEEEK;DLLHPS(1)PEEEK;DLLHPS(1)PEEEK;DLLHPS(1)PEEEK;DLLHPS(1)PEEEK ;;;; 157.86 1.46E-07 2573990000 3822800 2969870 1677720 5716610 2914290 3122750 4904370 3909630 2438590 7016740 TRUE FALSE FALSE 4673168.671 3317170.462 2298378.444 6028893.929 2624133.055 3286252.361 3856511.284 2950787.112 2927992.645 5267595.852 0.887153989 0.629731391 0.436323991 1.14452477 0.498165222 0.623861901 0.732119812 0.560177203 0.555849903 1 22.32871323 -10.08348457 4.905605825 1.000010485 0.67143026 0.197005665 0.197249005 2.19E-05 4.09E-06 0.184816527 0.044823162 8.25E-11 10.08348457 -0.328580225 DLLHPS(ph)PEEEK ddPTM_HeLa_A486_30min_R1 5 DLLHPSPEEEK 11 0 P42677 P42677 RPS27 40S ribosomal protein S27 1 0 DLLHPS(1)PEEEK;DLLHPS(1)PEEEK;DLLHPS(1)PEEEK;DLLHPS(1)PEEEK;DLLHPS(1)PEEEK ;;;; 196.33 5.40E-12 2809490000 4797820 4244040 1452110 2470240 2579260 4712810 5956860 4974310 3044490 8419200 TRUE FALSE FALSE 4461517.594 3907726.814 2014405.881 5750843.559 2255745.16 4131391.419 4466390.623 3841768.201 3308388.845 6310977.52 0.706945569 0.619195172 0.319190787 0.911244501 0.357431975 0.654635737 0.70771772 0.608743763 0.524227639 1 22.58943205 -10.8494539 2.561229593 1.164529194 0.600181123 0.349365355 0.163332484 21902824.91 13654331.01 22031171.43 0.039338747 1.41E-11 10.8494539 -0.564348071 DLLHPS(ph)PEEEKRK ddPTM_HeLa_A485_30min_R1 6 DLLHPSPEEEKRK 13 2 P42677 P42677 RPS27 40S ribosomal protein S27 1 0 DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK ;;;;; 176.29 4.53E-13 4066880000 3147500 2042119 1545266 6597390 4553670 3690110 7653180 7487150 2668910 9380980 TRUE FALSE FALSE 3847650.516 2280927.053 2116924.197 6957788.71 4100290.626 3883318.454 6018015.572 5650914.723 3204535.756 7042474.33 0.546349243 0.323881486 0.300593811 0.987975019 0.582223013 0.551413931 0.854531418 0.802404731 0.45502981 1 22.74765097 -4.864141051 0.152273896 1.027569055 1.36E-28 0.31106166 0.20201836 25.1523364 0.830281643 1.103942836 5.431747589 1.37E-05 4.864141051 -1.027569055 DLLHPS(ph)PEEEKRK ddPTM_HeLa_A486_30min_R1 4 DLLHPSPEEEKRK 13 2 P42677 P42677 RPS27 40S ribosomal protein S27 1 0 DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK;DLLHPS(1)PEEEKRK ;;; 168.41 2.12E-12 1654570000 1861880 1664160 749680 1807960 1989690 2675780 4189980 3799340 1377000 3807470 TRUE FALSE FALSE 1731371.827 1532285.901 1039976.173 4209022.249 1740124.527 2345669.469 3141602.687 2934313.221 1496359.469 2854054.73 0.606635818 0.53688035 0.364385505 1.474751765 0.609702578 0.821872631 1.100750681 1.028120866 0.524292493 1 21.44458157 -5.191090526 24.99999306 0.926632962 0.506058087 0.377999165 0.255121573 173.2383847 61563.22026 0.067210436 0.116411912 6.44E-06 5.191090526 -0.420574875 DLLPS(ph)PAGPVPSKDPK ddPTM_HeLa_A486_30min_R1 1 DLLPSPAGPVPSKDPK 16 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 DLLPS(1)PAGPVPSKDPK 85.808 0.00064502 256880000 180650 183100 79437 100320 160340 207060 269000 225160 146760 280830 TRUE FALSE FALSE 167987.3679 168590.4892 110197.1338 233550.0299 140228.6621 181515.0424 201693.3548 173895.9832 159481.275 210508.3401 0.798008135 0.800873206 0.523481083 1.109457372 0.666143023 0.862270076 0.958125244 0.826076454 0.757600743 1 17.68351787 -5.250250927 24.99606189 0.868818071 0.716796081 0.249389605 0.137638304 1179.818534 2635821.766 0.036220135 0.061975229 5.62E-06 5.250250927 -0.15202199 DLLS(ph)DLQDIS(ph)DSER ddPTM_HeLa_A485_30min_R1 2 DLLSDLQDISDSER 14 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;Q9UQ88-9;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 2 0 DLLS(1)DLQDIS(1)DSER;DLLS(1)DLQDIS(1)DSER ; 173.21 5.12E-12 310690000 375240 460720 348980 487050 447390 403930 548620 530710 377330 588960 TRUE FALSE FALSE 458710.8434 514597.1963 478082.2243 513656.3082 402846.2807 425079.1502 431402.8552 400552.5404 453056.6699 442143.111 1.037471425 1.163870212 1.081283893 1.161742195 0.911121921 0.96140625 0.975708644 0.905934143 1.024683318 1 18.75415389 -5.761699438 24.99999979 0.958980587 1.112732671 0.694486351 0.048020646 3.564163537 342644.0002 0.013570212 0.016375713 1.73E-06 5.761699438 0.153752085 DLLS(ph)DLQDIS(ph)DSER ddPTM_HeLa_A486_30min_R1 2 DLLSDLQDISDSER 14 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;Q9UQ88-9;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 2 0 DLLS(1)DLQDIS(1)DSER;DLLS(1)DLQDIS(0.976)DS(0.024)ER ; 235.7 7.84E-35 235270000 586550 578500 366870 230820 526330 590020 651390 609920 491720 789620 TRUE FALSE FALSE 545435.8739 532657.5531 508931.8891 537360.625 460312.7836 517229.3313 488405.3323 471054.5305 534342.6855 591894.0124 0.921509362 0.899920496 0.859836184 0.907866297 0.777694611 0.873854644 0.825156738 0.795842703 0.902767513 1 19.17497934 -4.597393503 1.237627887 0.854472453 0.932828448 0.048866864 0.060661931 1.851222173 3.724460388 0.017905602 0.160616459 2.53E-05 4.597393503 0.078355995 DLLS(ph)GDDEETQSSADDLTPSVTSHETSDFFPRPLR ddPTM_HeLa_A485_30min_R1 1 DLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLR 35 1 A8MQD4;Q7Z3K6-4;Q7Z3K6-3;Q7Z3K6;Q7Z3K6-2 A8MQD4 MIER3 Mesoderm induction early response protein 3 1 0 DLLS(1)GDDEETQSSADDLTPSVTSHETSDFFPRPLR 112.68 3.81E-05 116220000 3433.5 4281.9 4134.3 8383.6 8018.2 5431.3 8451.9 4428.3 3446.2 8823.7 TRUE FALSE FALSE 4197.27023 4782.630957 5663.749613 8841.57484 7219.879854 5715.67447 6646.082519 3342.252482 4137.82073 6624.113978 0.633634965 0.72200312 0.855019952 1.334755843 1.089938953 0.862858714 1.00331645 0.50455842 0.624660255 1 12.69351178 -9.969566352 4.537859656 1.000002747 0.86072622 0.033912518 0.234735771 173475248.7 13.45707549 5323.671001 0.062886425 1.07E-10 9.969566352 -0.139276527 DLLS(ph)GDDEETQSSADDLTPSVTSHETSDFFPRPLR ddPTM_HeLa_A486_30min_R1 1 DLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLR 35 1 A8MQD4;Q7Z3K6-4;Q7Z3K6-3;Q7Z3K6;Q7Z3K6-2 A8MQD4 MIER3 Mesoderm induction early response protein 3 1 0 DLLS(1)GDDEETQSSADDLTPSVTSHETSDFFPRPLR 114.11 3.32E-05 135980000 9170.4 9222.8 5980.4 3253.8 10996 10822 11226 12269 8112.6 10631 TRUE FALSE FALSE 8527.602316 8491.951739 8296.171041 7575.010838 9616.779146 9486.89167 8417.136063 9475.61653 8815.8067 7968.928404 1.070106529 1.065632832 1.041064823 0.950568314 1.206784483 1.190485243 1.056244408 1.189070356 1.106272544 1 12.96017002 -5.765549418 24.99984377 1.134118547 1.034915371 0.306649253 0.067556692 122.048797 742379.1615 0.020262799 0.02382097 1.72E-06 5.765549418 -0.099203175 DLLSDLQDIS(ph)DSER ddPTM_HeLa_A485_30min_R1 7 DLLSDLQDISDSER 14 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;Q9UQ88-9;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.999)DS(0.001)ER;DLLSDLQDIS(0.985)DS(0.015)ER;DLLSDLQDIS(0.981)DS(0.019)ER;DLLSDLQDIS(0.982)DS(0.018)ER;DLLSDLQDIS(0.998)DS(0.002)ER;DLLSDLQDIS(0.981)DS(0.019)ER;DLLSDLQDIS(0.999)DS(0.001)ER ;;;;;; 415.37 1.98E-143 5909471000 3435603 4543960 3786520 3726570 4287810 3914367 4529390 4761260 3535930 4685850 TRUE FALSE FALSE 4199841.035 5075336.595 5187311.318 3930143.083 3860900.581 4119317.203 3561648.825 3593553.52 4245558.718 3517753.832 1.193898503 1.442777647 1.47460896 1.117230844 1.097547118 1.171007808 1.012478131 1.021547752 1.206894775 1 21.7462231 -5.331137447 6.577092485 1.089514606 1.377035035 0.655932969 0.093257339 0.139062859 10.84364392 0.026271931 0.039284064 4.67E-06 5.331137447 0.287520429 DLLSDLQDIS(ph)DSER ddPTM_HeLa_A486_30min_R1 7 DLLSDLQDISDSER 14 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;Q9UQ88-9;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.936)DS(0.064)ER;DLLSDLQDIS(1)DSER;DLLSDLQDIS(0.993)DS(0.007)ER;DLLSDLQDIS(1)DSER;DLLSDLQDIS(0.995)DS(0.005)ER;DLLSDLQDIS(0.985)DS(0.015)ER;DLLSDLQDIS(0.992)DS(0.008)ER ;;;;;; 373.42 1.62E-109 6302244000 5461361 5459644 3713509 1536120 5011479 4810257 5054065 5161751 4402093 5857590 TRUE FALSE FALSE 5078547.796 5027001.926 5151479.136 3576164.991 4382892.574 4216816.398 3789484.481 3986532.978 4783669.966 4390811.337 1.156630838 1.144891351 1.17324083 0.814465646 0.998196515 0.960372941 0.863048806 0.907926274 1.089472901 1 22.06605612 -5.241203284 24.97161025 0.942916407 1.156918075 0.63866102 0.072534043 493.358591 608810.2199 0.019328069 0.033424832 5.74E-06 5.241203284 0.214001668 DLLSDLQDIS(ph)DSERK ddPTM_HeLa_A485_30min_R1 2 DLLSDLQDISDSERK 15 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;Q9UQ88-9;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.999)DS(0.001)ERK;DLLSDLQDIS(0.996)DS(0.004)ERK ; 167.99 2.55E-12 100532000 124959 114175 83076 178018 136420 135761 192639 187972 97179 218930 TRUE FALSE FALSE 152755.6984 127526.7731 113809.2695 187742.6726 122837.5458 142869.236 151480.1039 141871.5723 116681.9339 164354.7801 0.929426563 0.775923724 0.692460964 1.142301261 0.747392596 0.869273385 0.921665338 0.863203201 0.7099394 1 17.32645389 -11.47541571 2.298273177 2.832909165 0.851969999 0.113280918 0.125662283 14708876.8 1088128.852 141253238.5 0.032145437 3.35E-12 11.47541571 -1.980939166 DLLSDLQDIS(ph)DSERK ddPTM_HeLa_A486_30min_R1 1 DLLSDLQDISDSERK 15 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;Q9UQ88-9;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.934)DS(0.066)ERK 82.609 0.0018834 34334000 64259 58254 27076 30725 57725 62189 89089 79167 50751 100600 TRUE FALSE FALSE 59754.77593 53637.74088 37560.55232 71529.35276 50484.59224 54516.75347 66797.98991 61142.4023 55150.13754 75409.1052 0.792407969 0.711289979 0.498090413 0.94855061 0.669476081 0.722946564 0.885808017 0.81080928 0.731345869 1 16.20245111 -13.9999997 0.13338473 1.858456119 0.651216592 0.315814261 0.114331297 170.0611885 1.415306586 38.71350413 0.803271203 1.00E-14 13.9999997 -1.207239527 DLLSGDDEETQS(ph)SADDLTPSVTSHETSDFFPRPLR ddPTM_HeLa_A485_30min_R1 1 DLLSGDDEETQSSADDLTPSVTSHETSDFFPRPLR 35 1 A8MQD4;Q7Z3K6-4;Q7Z3K6-3;Q7Z3K6;Q7Z3K6-2 A8MQD4 MIER3 Mesoderm induction early response protein 3 1 0 DLLS(0.015)GDDEET(0.018)QS(0.755)S(0.211)ADDLTPSVTSHETSDFFPRPLR 82.266 0.00015145 87422000 8699.9 11569 9499.2 8241.3 12823 8212.9 14878 11194 9689.5 17434 TRUE FALSE FALSE 10635.16274 12921.89391 13013.34937 8691.501351 11546.2971 8642.914744 11699.19376 8448.653948 11634.09377 13088.02465 0.81258731 0.987306661 0.994294382 0.664080454 0.88220319 0.660368159 0.89388537 0.645525522 0.888911359 1 13.67595975 -5.243246184 24.8483324 0.791121009 0.936987174 0.17850317 0.121562754 1072.940772 1465424.048 0.030300214 0.052342003 5.71E-06 5.243246184 0.145866165 DLLVSSGSNNSLPCGS(ph)PK ddPTM_HeLa_A485_30min_R1 1 DLLVSSGSNNSLPCGSPK 18 0 Q5THK1-2;Q5THK1-4;Q5THK1;Q5THK1-3 Q5THK1-2 PRR14L Protein PRR14L 1 0 DLLVSSGSNNS(0.021)LPCGS(0.978)PK 106.19 0.00013811 139910000 39837 40004 33081 58832 52977 40352 69750 62771 40687 97550 TRUE FALSE FALSE 48698.60321 44682.11981 45319.03852 62045.84319 47702.42387 42464.76832 54847.34269 47376.31383 48852.5077 73232.58027 0.664985489 0.610139908 0.618837112 0.847243713 0.651382536 0.579861698 0.748947292 0.646929463 0.667087074 1 16.16019801 -11.16079786 2.175933302 1.73667701 0.670870123 0.648697494 0.072721164 3324588.138 723628.8335 12074314.39 0.018714604 6.91E-12 11.16079786 -1.065806887 DLLVSSGSNNSLPCGS(ph)PK ddPTM_HeLa_A486_30min_R1 1 DLLVSSGSNNSLPCGSPK 18 0 Q5THK1-2;Q5THK1-4;Q5THK1;Q5THK1-3 Q5THK1-2 PRR14L Protein PRR14L 1 0 DLLVSSGSNNSLPCGS(1)PK 103.61 7.32E-05 0 41603 39355 21041 34344 41863 46835 64369 50765 33676 75887 TRUE FALSE FALSE 38686.84454 36236.36647 29188.6387 79954.56765 36612.15218 41056.97388 48263.19537 39206.91769 36595.06279 56884.40126 0.680095838 0.63701763 0.513122017 1.405562261 0.643623759 0.721761555 0.84844341 0.68923847 0.643323336 1 15.79574547 -11.55441717 2.070082319 4.387130922 0.75898042 0.091420013 0.232497033 14598212.17 658126.9057 232977320.6 0.058248429 2.79E-12 11.55441717 -3.628150501 DLNES(ph)PVK ddPTM_HeLa_A485_30min_R1 6 DLNESPVK 8 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK ;;;;; 117.25 0.00089942 6620530000 7067400 5144110 3883360 10996200 6995460 5647270 9233400 6848580 5196410 13466800 TRUE FALSE FALSE 8639518.748 5745668.917 5319976.464 11596894.56 6298967.44 5942952.325 7260608.66 5168955.017 6239281.823 10109774.6 0.854570858 0.568328093 0.526221076 1.147097242 0.623057159 0.587842218 0.718177106 0.511282914 0.617153406 1 23.2692475 -9.988367073 4.793768133 1.000003948 0.680682236 0.213980383 0.181752508 178812606.8 0.093733705 8912.106568 0.045749283 1.03E-10 9.988367073 -0.319321712 DLNES(ph)PVK ddPTM_HeLa_A486_30min_R1 7 DLNESPVK 8 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK;DLNES(1)PVK ;;;;;; 142.71 0.00038436 7903590000 12354210 12397970 5381300 5599600 9459500 13723430 16012480 14130830 9636960 18526100 TRUE FALSE FALSE 11488243.68 11415509.7 7465083.476 13036151.79 8273001.304 12030372.74 12005988.14 10913548.48 10472299.45 13887043.98 0.827263433 0.822025892 0.537557416 0.938727623 0.595735228 0.866301911 0.864545987 0.785879882 0.754105731 1 23.7272362 DLNES(ph)PVKSFVSISEATDCLVDFKK ddPTM_HeLa_A485_30min_R1 2 DLNESPVKSFVSISEATDCLVDFKK 25 2 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 DLNES(0.928)PVKS(0.029)FVS(0.029)IS(0.008)EAT(0.008)DCLVDFKK;DLNES(1)PVKSFVSISEATDCLVDFKK ; 209.36 4.35E-29 343062000 204834 161535 75401.5 308445 307818 287485 535654 643499 194164 475543 TRUE FALSE FALSE 250398.6166 180425.1131 103295.6526 325294.5693 277170.5591 302537.2701 421207.147 485679.8613 233130.9338 356998.8818 0.701398882 0.505394057 0.289344471 0.911192124 0.776390553 0.847445988 1.179855648 1.360452052 0.653029871 1 18.44556003 -5.832474116 1.188929274 1.054453463 0.514139105 0.47069981 0.216727445 0.39156705 1.17157763 0.093312953 0.12673233 1.47E-06 5.832474116 -0.540314357 DLNES(ph)PVKSFVSISEATDCLVDFKK ddPTM_HeLa_A486_30min_R1 2 DLNESPVKSFVSISEATDCLVDFKK 25 2 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 DLNES(0.936)PVKS(0.024)FVS(0.035)IS(0.002)EAT(0.002)DCLVDFKK;DLNES(1)PVKSFVSISEATDCLVDFKK ; 175.42 7.85E-15 311111000 138782 105233 43790.6 135814 137692 154273 257603 228281 86808 226023 TRUE FALSE FALSE 129054.0985 96893.95383 60747.49307 316181.8557 120421.3854 135240.3658 193148.0048 176306.3996 94332.58733 169425.3696 0.761716494 0.57189755 0.358550158 1.866201363 0.710763599 0.798229723 1.140018199 1.040613929 0.556779587 1 17.37029039 DLNYCFSGMSDHR ddPTM_HeLa_A485_30min_R1 2 DLNYCFSGMSDHR 13 0 P55795;G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7 P55795;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 ; ; 132.08 6.17E-05 558330000 208160 315720 371100 145124 467480 254580 328880 315080 311350 283580 FALSE FALSE TRUE 254464.4739 352640.7076 508385.3328 153051.7566 420936.0498 267909.4151 258612.1013 237806.136 373835.0891 212888.7249 1.195293334 1.656455539 2.388033152 0.718928429 1.977258542 1.258448118 1.214775942 1.117044297 1.756011688 1 17.69974002 DLPEHAVLK ddPTM_HeLa_A485_30min_R1 2 DLPEHAVLK 9 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 87.308 0.014694 46756000 112194 115978 91275 142268 140799 142518 172720 199490 112371 183152 FALSE FALSE TRUE 137151.1682 129540.6182 125041.4208 150039.7406 126780.5572 149980.0221 135816.961 150564.7647 134922.829 137495.5771 0.997495128 0.942143893 0.909421404 1.091233215 0.922070076 1.090798885 0.987791491 1.095051695 0.981288503 1 17.06902569 -5.248702749 24.99857415 1.025017241 0.948932519 0.265406057 0.056660472 995.0423181 1952997.352 0.014346554 0.024648643 5.64E-06 5.248702749 -0.076084722 DLPEHAVLK ddPTM_HeLa_A486_30min_R1 1 DLPEHAVLK 9 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 78.934 0.03103 133310000 164540 163550 104210 67392 262150 173500 190710 188730 147640 205470 FALSE FALSE TRUE 153006.5957 150589.7024 144562.9028 156891.9818 229268.7025 152095.334 142992.3409 145760.2989 160437.5541 154018.9746 0.993426921 0.977734742 0.938604501 1.018653592 1.488574399 0.987510366 0.928407303 0.946378843 1.041673953 1 17.23274857 -6.490983011 24.99160754 0.972262366 1.08310296 0.107788156 0.14722956 1625.556028 1273691.455 0.056075085 0.04940489 3.23E-07 6.490983011 0.110840594 DLPLLLFR ddPTM_HeLa_A485_30min_R1 1 DLPLLLFR 8 0 A0A286YFA2;A0A286YF22;A0A2C9F2M7;O43175 A0A286YFA2 PHGDH D-3-phosphoglycerate dehydrogenase 0 0 111.04 0.01143 7539500 7262.7 7833.5 8370.2 7659 9692 7958.5 8951.2 11402 6962.7 9608.3 FALSE FALSE TRUE 8878.262559 8749.559683 11466.68529 8077.391776 8727.030449 8375.194754 7038.702995 8605.641622 8360.050024 7213.127638 1.230847838 1.213004971 1.589696713 1.119818223 1.209881606 1.161104472 0.975818445 1.19305273 1.159004865 1 12.81640924 DLPPFGINS(ph)PQALK ddPTM_HeLa_A486_30min_R1 2 DLPPFGINSPQALK 14 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 DLPPFGINS(1)PQALK;DLPPFGINS(1)PQALK ; 106.82 0.000219 8479600 42400 54320 26163 18896.6 46014 43238 53665 43211 36415 61427 TRUE FALSE FALSE 39427.97895 50015.48537 36294.01427 43992.23978 40242.49506 37903.73517 40237.44939 33372.79859 39571.48152 46045.27938 0.856287104 1.086223953 0.788224434 0.955412593 0.873976564 0.823183955 0.873866983 0.724782194 0.859403658 1 15.49076564 -5.968329507 5.139182933 0.840742472 0.923516893 0.084016705 0.095346523 0.369892804 25.20406723 0.028996885 0.032341946 1.08E-06 5.968329507 0.08277442 DLPPFGINS(ph)PQALKK ddPTM_HeLa_A485_30min_R1 2 DLPPFGINSPQALKK 15 1 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 DLPPFGINS(1)PQALKK;DLPPFGINS(1)PQALKK ; 168.09 2.52E-12 921560000 889850 683500 546330 1101440 989060 844390 1176110 1046180 720230 1503700 TRUE FALSE FALSE 1087794.063 763429.3793 748440.2017 1161608.878 890585.7136 888600.9547 924824.4906 789602.7147 864773.5547 1128855.264 0.963625805 0.676286327 0.663008116 1.029014893 0.788928167 0.787169962 0.819258695 0.699472058 0.766062384 1 20.10642909 -11.16755881 2.32867287 1.502756833 0.79534169 0.223872657 0.111954127 9041132.195 2211437.452 23953788.9 0.028165046 6.80E-12 11.16755881 -0.707415142 DLPPFGINS(ph)PQALKK ddPTM_HeLa_A486_30min_R1 2 DLPPFGINSPQALKK 15 1 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 DLPPFGINS(1)PQALKK;DLPPFGINS(1)PQALKK ; 142.78 5.59E-08 1038970000 806000 767130 357980 371470 730560 894690 978130 903310 569120 932960 TRUE FALSE FALSE 749503.5622 706339.825 496599.443 864800.9331 638926.3526 784312.2443 733391.5284 697646.0321 618451.7798 699340.7434 1.071728723 1.010008113 0.710096541 1.236594523 0.913612368 1.121502289 1.048689834 0.997576702 0.884335405 1 19.41563603 -4.29619291 5.823188963 0.993317805 1.072736839 0.032092375 0.133177519 0.616531391 64.18752136 0.032176166 0.150112304 5.06E-05 4.29619291 0.079419035 DLPS(ph)PDSR ddPTM_HeLa_A485_30min_R1 2 DLPSPDSR 8 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 DLPS(0.998)PDS(0.002)R;DLPS(1)PDSR ; 111.61 0.0011548 1431960000 1912010 2169010 2074300 1890130 2649000 2112160 2445100 2455900 1938390 2434400 TRUE FALSE FALSE 2337330.028 2422656.852 2841669.889 1993383.016 2385256.259 2222749.432 1922684.41 1853586.674 2327407.093 1827548.882 1.278942551 1.325631766 1.554907733 1.090741285 1.305166873 1.216246227 1.052056352 1.014247385 1.273512909 1 20.80147856 -6.086761791 0.919776067 1.084241819 1.360572293 0.420655287 0.125483007 0.55979614 1.029562512 0.070394894 0.077847569 8.19E-07 6.086761791 0.276330474 DLPS(ph)PDSR ddPTM_HeLa_A486_30min_R1 1 DLPSPDSR 8 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 DLPS(1)PDSR 119.53 0.00079633 463540000 810820 841040 647650 272440 914080 703870 776350 845090 706900 754430 TRUE FALSE FALSE 753985.7051 774392.9274 898437.4247 634254.0884 799427.5629 617033.6758 582099.0186 652681.4552 768174.6612 565515.8175 1.333270762 1.369356795 1.588704324 1.121549687 1.413625469 1.091098881 1.029324027 1.154134747 1.358361053 1 19.10920785 -5.867349426 1.33883752 1.136266008 1.403773882 0.380608533 0.144345487 0.462115606 1.732982905 0.058430805 0.074506083 1.36E-06 5.867349426 0.267507873 DLPS(ph)PK ddPTM_HeLa_A486_30min_R1 2 DLPSPK 6 0 C9JA69;Q8WY36-2;Q8WY36;C9JYU6;C9JZA0;C9J8D0;Q8WY36-3 C9JA69 BBX HMG box transcription factor BBX 1 0 DLPS(1)PK;DLPS(1)PK ; 76.679 0.023879 1310430000 5720100 5347100 2315100 3276400 4448500 6028600 7834000 6770700 4336700 10301200 TRUE FALSE FALSE 5319150.529 4923376.322 3211568.721 7627624.78 3890527.649 5284852.626 5873850.34 5229159.413 4712608.648 7721712.47 0.688856332 0.637601612 0.415914052 0.987815178 0.503842595 0.684414584 0.760692704 0.677202037 0.610306155 1 22.8804894 -14 0.38768045 5.9771124 0.65656632 0.328698363 0.143889337 760.7604105 5.570172648 3191.684678 0.091427704 1.00E-14 14 -5.32054608 DLPS(ph)PLPTK ddPTM_HeLa_A485_30min_R1 1 DLPSPLPTK 9 0 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 DLPS(0.999)PLPT(0.001)K 114.86 0.00070866 475830000 1013000 778110 674680 1367900 1029600 865690 1126100 827480 890120 1789300 TRUE FALSE FALSE 1238338.355 869103.1958 924272.2078 1442624.913 927089.4089 911016.1898 885499.5356 624539.2326 1068758.919 1343260.44 0.921889991 0.647010193 0.688081165 1.073972605 0.690178451 0.678212626 0.659216567 0.464942772 0.795645348 1 20.35730762 -5.950967714 24.99997744 0.682586836 0.818256526 0.085297524 0.168484161 237.5433813 121114.4183 0.051423444 0.058308692 1.12E-06 5.950967714 0.13566969 DLPS(ph)PLPTK ddPTM_HeLa_A486_30min_R1 1 DLPSPLPTK 9 0 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 DLPS(0.999)PLPT(0.001)K 111.63 0.00086352 431370000 498410 581650 300440 180870 487860 660790 638940 642770 521390 727550 TRUE FALSE FALSE 463474.0328 535557.9357 416778.4141 421074.5007 426668.0497 579268.4482 479070.454 496425.3026 566584.505 545366.7444 0.849839191 0.982014289 0.764216774 0.772094201 0.782350692 1.06216313 0.878437233 0.910259578 1.03890549 1 19.0568672 -6.248821947 24.9627833 0.966124572 0.831659482 0.473632183 0.077422838 796.6777919 1576176.92 0.026990742 0.026815943 5.64E-07 6.248821947 -0.13446509 DLPS(ph)PLPTKR ddPTM_HeLa_A485_30min_R1 6 DLPSPLPTKR 10 1 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 DLPS(1)PLPTKR;DLPS(1)PLPTKR;DLPS(1)PLPTKR;DLPS(0.999)PLPT(0.001)KR;DLPS(1)PLPTKR;DLPS(1)PLPTKR ;;;;; 143.25 3.54E-06 9173900000 6038570 6655110 4943100 5923750 7756730 7335040 9533780 9970960 5523190 8445930 TRUE FALSE FALSE 7381829.064 7433367.223 6771758.39 6247349.463 6984442.726 7719091.352 7496810.019 7525566.426 6631643.571 6340515.087 1.164231764 1.172360151 1.068013923 0.9853063 1.101557623 1.217423387 1.182366088 1.18690143 1.045915589 1 22.59616862 -7.950395276 5.799599366 1.000347657 1.131742878 0.332028287 0.064897475 0.219071987 15.40526529 0.071048282 0.018458127 1.12E-08 7.950395276 0.131395221 DLPS(ph)PLPTKR ddPTM_HeLa_A486_30min_R1 6 DLPSPLPTKR 10 1 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 DLPS(1)PLPTKR;DLPS(1)PLPTKR;DLPS(1)PLPTKR;DLPS(1)PLPTKR;DLPS(1)PLPTKR;DLPS(1)PLPTKR ;;;;; 167.73 2.12E-07 9254130000 10432780 10061080 6283710 3916840 10728910 9668110 11877880 11832260 7916780 12650960 TRUE FALSE FALSE 9701495.997 9263803.379 8716930.796 9118601.466 9383190.065 8475356.886 8905908.793 9138312.694 8603012.865 9483077.272 1.023032473 0.976877348 0.919209086 0.961565661 0.989466794 0.893734876 0.939137006 0.96364423 0.907196326 1 23.17692386 -4.427175817 3.32444041 0.94531958 1.02276231 0.343414838 0.032363433 0.284819322 5.352861643 0.008025514 0.043532725 3.74E-05 4.427175817 0.07744273 DLPTIPGVTS(ph)PSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 2 DLPTIPGVTSPSSDEPPMEASQSHLR 26 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVT(0.182)S(0.815)PS(0.002)S(0.001)DEPPMEASQSHLR;DLPTIPGVT(0.161)S(0.765)PS(0.056)S(0.017)DEPPMEASQSHLR ; 162.01 9.19E-14 460290000 224635 242887 277610 231879 315010 197471 206183 183893 231596 351110 TRUE FALSE FALSE 274604.2808 271290.5218 380309.4913 244545.9626 283646.4983 207810.2762 162130.3177 138792.9534 278075.1929 263584.7387 1.04180645 1.029234557 1.442835777 0.927769809 1.076111234 0.788400259 0.615097515 0.52655914 1.054974557 1 18.00790732 -6.186831439 2.374461509 0.750380718 1.1251915 0.37176762 0.194970583 0.293201258 3.24362905 0.072865798 0.070700616 6.50E-07 6.186831439 0.374810782 DLPTIPGVTS(ph)PSSDEPPMEASQSHLR ddPTM_HeLa_A486_30min_R1 2 DLPTIPGVTSPSSDEPPMEASQSHLR 26 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVT(0.09)S(0.733)PS(0.147)S(0.03)DEPPMEASQSHLR;DLPTIPGVT(0.146)S(0.767)PS(0.077)S(0.01)DEPPMEASQSHLR ; 208.58 1.02E-28 526300000 416250 688190 533920 118523 568850 573170 561370 531140 622870 415920 TRUE FALSE FALSE 387073.0245 633655.3181 740668.1229 275927.5338 497499.5287 502458.113 420909.2884 410211.0167 676860.8731 311770.9248 1.241530219 2.03243878 2.375680552 0.885032926 1.595721375 1.61162595 1.350059467 1.31574494 2.171019871 1 18.25012687 -5.255123258 24.99915949 1.444198556 1.898138688 0.200121507 0.423298842 855.1891872 3384822.065 0.113512249 0.190578605 5.56E-06 5.255123258 0.453940132 DLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDK ddPTM_HeLa_A485_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPS(0.001)S(0.001)DEPPMEAS(0.358)QS(0.358)HLRNS(0.283)PEDK 72.725 0.0008099 611470000 209960 242810 271850 209530 341470 244090 288270 272980 257570 351570 TRUE FALSE FALSE 256664.8776 271204.5173 372418.6276 220976.0933 307472.0478 256870.175 226678.7596 206031.227 309261.9364 263930.0692 0.972473044 1.027562029 1.411050392 0.837252436 1.164975438 0.973250891 0.858859168 0.780628095 1.171757115 1 18.0097962 -6.45381417 6.637284599 0.931909885 1.083543912 0.119580296 0.167463837 0.47004606 37.4598058 0.058675816 0.051283449 3.52E-07 6.45381417 0.151634026 DLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDK ddPTM_HeLa_A486_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.426)QS(0.426)HLRNS(0.147)PEDK 188.64 2.56E-21 649900000 330920 344090 172620 45571 292580 351500 391900 353780 263460 379090 TRUE FALSE FALSE 307724.2169 316823.0552 239463.0869 106091.591 255881.8882 308135.5038 293842.4749 273232.017 286296.9249 284163.3965 1.082912932 1.114932673 0.842695047 0.373347139 0.900474485 1.084360293 1.034061665 0.961531359 1.007508104 1 18.11636121 -6.011557608 24.80521418 1.013489583 0.842069602 0.144581955 0.189874742 1111.752707 2386073.989 0.068052504 0.071986926 9.74E-07 6.011557608 -0.171419981 DLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_HeLa_A485_30min_R1 4 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.877)QS(0.121)HLRNS(0.002)PEDKR;DLPTIPGVTSPS(0.023)S(0.019)DEPPMEAS(0.47)QS(0.47)HLRNS(0.018)PEDKR;DLPTIPGVTSPS(0.002)S(0.007)DEPPMEAS(0.33)QS(0.33)HLRNS(0.33)PEDKR;DLPTIPGVT(0.002)S(0.009)PS(0.06)S(0.094)DEPPMEAS(0.278)QS(0.278)HLRNS(0.278)PEDKR ;;; 183.27 8.03E-21 2917300000 639954 545741 410932 553281 644275 827691 846598 820238 679843 807130 TRUE FALSE FALSE 782309.5595 609560.6626 562952.8471 583505.34 580128.7188 871027.6209 665715.4212 619073.3444 816281.2542 605927.3451 1.29109466 1.005996292 0.929076484 0.962995555 0.957422905 1.437511655 1.098672022 1.021695669 1.347160284 1 19.20878529 DLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_HeLa_A486_30min_R1 4 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.462)QS(0.318)HLRNS(0.22)PEDKR;DLPTIPGVTSPSSDEPPMEAS(0.333)QS(0.333)HLRNS(0.333)PEDKR;DLPTIPGVTSPS(0.003)S(0.012)DEPPMEAS(0.328)QS(0.328)HLRNS(0.328)PEDKR;DLPTIPGVTS(0.001)PS(0.009)S(0.021)DEPPMEAS(0.323)QS(0.323)HLRNS(0.323)PEDKR ;;; 208.28 9.38E-30 3275720000 1015750 1041400 630138 133364 993750 1123740 1155780 1215810 863398 965140 TRUE FALSE FALSE 944551.1703 958875.6713 874144.3093 310478.1318 869104.6086 985104.3842 866591.6194 938996.6039 938238.0338 723462.662 1.305597676 1.325397594 1.208278402 0.429155709 1.20131232 1.361652005 1.197838762 1.297919925 1.296871398 1 19.46455904 -5.981983995 24.99636957 1.251198537 1.060589665 0.085287916 0.251612759 595.3400232 826002.4123 0.082775799 0.093843129 1.04E-06 5.981983995 -0.190608872 DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDK ddPTM_HeLa_A486_30min_R1 2 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.162)QS(0.8)HLRNS(0.038)PEDK;DLPTIPGVTSPSSDEPPMEAS(0.084)QS(0.598)HLRNS(0.317)PEDK ; 273.42 1.01E-77 737250000 764500 715200 381940 122114 629360 776090 967820 843580 634360 876630 TRUE FALSE FALSE 710912.4979 658524.9473 529837.3967 284287.5633 550419.8003 680343.9065 725661.1994 651515.2492 689346.8356 657116.1421 1.081867348 1.002143921 0.806307078 0.432629097 0.837629401 1.035348035 1.104311937 0.991476556 1.049048701 1 19.32578886 -6.250660162 6.222038447 1.040311669 0.817179477 0.283189315 0.161451599 0.226527581 40.80047803 0.061325574 0.05857506 5.61E-07 6.250660162 -0.223132192 DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_HeLa_A485_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.128)QS(0.436)HLRNS(0.436)PEDKR 88.087 9.04E-05 1548800000 127020 117780 103990 135100 155030 121460 227430 174480 136840 230030 TRUE FALSE FALSE 155275.1608 131553.3465 142460.2284 142480.1709 139594.6689 127819.4578 178837.7226 131688.5064 164302.5328 172687.7544 0.899167178 0.76179893 0.824958486 0.825073969 0.808364608 0.740176733 1.035613227 0.762581614 0.951442871 1 17.39780626 -7.982214937 0.569669802 1.002501622 0.814013712 0.307763726 0.08275559 1.102564923 0.862070207 0.084834591 0.038407244 1.04E-08 7.982214937 -0.18848791 DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_HeLa_A486_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.019)QS(0.49)HLRNS(0.49)PEDKR 220.76 2.20E-39 2397500000 319170 267780 189530 42727 317610 316170 383280 369410 265540 300130 TRUE FALSE FALSE 296797.8312 246560.1376 262921.0918 99470.6153 277772.3922 277164.16 287379.2901 285303.4072 288557.221 224975.4945 1.319245155 1.095942196 1.168665469 0.442139779 1.234678438 1.23197489 1.277380413 1.268153262 1.282616232 1 17.77940834 DLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDK ddPTM_HeLa_A485_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPSSDEPPMEAS(0.076)QS(0.422)HLRNS(0.503)PEDK 218.98 4.20E-39 649320000 280940 217290 185760 335950 290830 242630 414600 296060 251320 577840 TRUE FALSE FALSE 343434.1338 242700.1753 254480.3541 354302.0978 261873.944 255333.7316 326017.323 223450.8208 301757.6188 433795.1224 0.791696624 0.559481107 0.586637196 0.816749842 0.603681163 0.588604432 0.75154677 0.515106808 0.695622434 1 18.72665431 -10.73862348 1.666958627 1.127805158 0.651445386 0.523401436 0.098205594 62515.61466 26860.32349 32733.02754 0.025641334 1.83E-11 10.73862348 -0.476359772 DLQEQDADAGS(ph)ER ddPTM_HeLa_A485_30min_R1 4 DLQEQDADAGSER 13 0 A0A087WW12;A0A087WZ11;Q6P158-3;Q6P158-2;Q6P158 A0A087WW12 DHX57 Putative ATP-dependent RNA helicase DHX57 1 0 DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER ;;; 273.54 1.70E-48 10204500000 2707820 3093550 2869310 2933010 3407780 2838680 3255190 3339320 2650160 3538300 TRUE FALSE FALSE 3310165.217 3455313.762 3930787.171 3093232.91 3068489.458 2987308.895 2559692.064 2520346.534 3182022.803 2656266.928 1.246171905 1.300815715 1.479816328 1.164503792 1.155188669 1.12462677 0.963642636 0.948830296 1.197930362 1 21.3409687 -5.82114394 1.439774002 1.034764081 1.333863486 0.632006381 0.094170616 0.258554853 1.117507426 0.037030402 0.048546592 1.51E-06 5.82114394 0.299099405 DLQEQDADAGS(ph)ER ddPTM_HeLa_A486_30min_R1 4 DLQEQDADAGSER 13 0 A0A087WW12;A0A087WZ11;Q6P158-3;Q6P158-2;Q6P158 A0A087WW12 DHX57 Putative ATP-dependent RNA helicase DHX57 1 0 DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER ;;; 277.34 1.30E-48 8704700000 7260140 8092570 6404460 2501820 8234030 7045410 7854920 7671930 6649780 7977620 TRUE FALSE FALSE 6751241.677 7451285.281 8884438.429 5824363.395 7201241.178 6176218.947 5889535.935 5925199.016 7226188.285 5979972.026 1.128975461 1.246040157 1.485698995 0.973978368 1.204226566 1.032817364 0.984876837 0.990840591 1.208398342 1 22.51170731 -5.281855438 24.99777022 1.058257312 1.282818436 0.459504169 0.114500644 714.7161158 875108.8004 0.032300458 0.047972367 5.23E-06 5.281855438 0.224561124 DLQGAT(ph)EER ddPTM_HeLa_A486_30min_R1 1 DLQGATEER 9 0 A0A087WWW8;Q9Y6J0-2;Q9Y6J0 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 1 0 DLQGAT(1)EER 71.085 0.018016 212280000 190100 86069 318170 12143 96379 335280 65889 102870 417910 41277 TRUE FALSE FALSE 176774.9717 79248.57898 441373.9449 28269.51767 84290.24712 293916.5625 49402.8753 79448.74664 454134.7753 30940.97053 5.713297568 2.561282908 14.26503233 0.913659694 2.72422764 9.499267716 1.596681502 2.567752248 14.67745735 1 14.91723083 DLQS(ph)PDFTTGFHSDK ddPTM_HeLa_A485_30min_R1 3 DLQSPDFTTGFHSDK 15 0 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(1)PDFTTGFHSDK;DLQS(0.991)PDFT(0.007)T(0.002)GFHSDK;DLQS(1)PDFTTGFHSDK ;; 188.19 3.88E-18 705850000 983960 936010 600870 1175300 803760 893200 1077960 944340 723570 1453980 TRUE FALSE FALSE 1202838.507 1045468.227 823156.8173 1239503.663 723734.8322 939966.5709 847645.0399 712739.1343 868783.862 1091529.545 1.101975218 0.957801126 0.754131504 1.135565839 0.663046489 0.861146247 0.776566282 0.652972829 0.795932521 1 20.05791975 -5.771312521 24.99977203 0.776983937 0.968596709 0.33487735 0.133161439 237.0687067 600279.6317 0.039952598 0.045841945 1.69E-06 5.771312521 0.191612772 DLQS(ph)PDFTTGFHSDK ddPTM_HeLa_A486_30min_R1 3 DLQSPDFTTGFHSDK 15 0 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(1)PDFTTGFHSDK;DLQS(1)PDFTTGFHSDK;DLQS(0.998)PDFT(0.002)TGFHSDK ;; 216.31 1.41E-33 811220000 1070740 1077820 516970 308588 748790 1049400 1121850 931350 904720 1414510 TRUE FALSE FALSE 995686.6553 992409.6178 717154.6289 718408.4592 654869.776 919935.6975 841151.2643 719301.9362 983141.858 1060307.489 0.939054629 0.93596398 0.676364768 0.677547284 0.617622513 0.867612185 0.793308802 0.678389942 0.927223346 1 20.01605128 -7.937236525 5.645489389 0.999097838 0.771409794 0.343887728 0.107360803 0.207050719 11.78846944 0.111480564 0.028983558 1.16E-08 7.937236525 -0.227688044 DLQS(ph)PDFTTGFHSDKIEAK ddPTM_HeLa_A485_30min_R1 3 DLQSPDFTTGFHSDKIEAK 19 1 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(1)PDFTTGFHSDKIEAK;DLQS(1)PDFTTGFHSDKIEAK;DLQS(0.99)PDFT(0.01)TGFHSDKIEAK ;; 321.97 2.97E-90 4290210000 2816230 2149530 1372100 4001640 3301910 3201870 5063500 5212700 2291140 5900170 TRUE FALSE FALSE 3442690.648 2400898.835 1879696.888 4220239.461 2973160.247 3369514.962 3981641.86 3934277.152 2750950.782 4429366.204 0.777242271 0.542041169 0.424371524 0.952786305 0.671238301 0.760721694 0.898919095 0.888225758 0.621070974 1 22.07866885 -5.263872046 24.99838648 0.816582966 0.577300608 0.398295569 0.138268876 218.215727 2242418.348 0.037848299 0.059254394 5.45E-06 5.263872046 -0.239282358 DLQS(ph)PDFTTGFHSDKIEAK ddPTM_HeLa_A486_30min_R1 3 DLQSPDFTTGFHSDKIEAK 19 1 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(1)PDFTTGFHSDKIEAK;DLQS(0.994)PDFT(0.005)T(0.001)GFHSDKIEAK;DLQS(1)PDFTTGFHSDKIEAK ;; 277.59 8.18E-70 3182650000 2823560 2519400 1147900 1261260 2422060 3184310 4149600 3686750 2144100 4319470 TRUE FALSE FALSE 2625643.025 2319753.569 1592397.622 2936277.021 2118262.65 2791462.208 3111326.19 2847357.506 2329952.314 3237846.597 0.810922614 0.716449498 0.491807618 0.906861067 0.654219583 0.862135411 0.960924521 0.87939852 0.719599352 1 21.6266032 -6.348206227 6.125565503 0.883541301 0.714512315 0.327163993 0.120910385 0.29892994 17.1711842 0.0426499 0.037534438 4.49E-07 6.348206227 -0.169028986 DLQS(ph)SPPSLPLGFLGEGDAVTK ddPTM_HeLa_A485_30min_R1 1 DLQSSPPSLPLGFLGEGDAVTK 22 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLQS(0.527)S(0.354)PPS(0.119)LPLGFLGEGDAVTK 133.15 9.92E-07 28026000 13475 9627 7243.3 12817 15123 13741 17470 18272 10014 19215 TRUE FALSE FALSE 16472.46726 10752.79391 9922.898089 13517.16026 13617.30102 14460.45751 13737.39178 13790.76335 12023.71795 14425.05413 1.14193452 0.745424857 0.6878933 0.93706132 0.944003461 1.002454298 0.952328613 0.956028534 0.833530179 1 13.81628911 -5.485014297 24.83418753 0.9480415 0.841344772 0.098527099 0.119152818 1029.480565 675205.806 0.033544938 0.049740843 3.27E-06 5.485014297 -0.106696727 DLQS(ph)SPPSLPLGFLGEGDAVTK ddPTM_HeLa_A486_30min_R1 1 DLQSSPPSLPLGFLGEGDAVTK 22 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLQS(0.411)S(0.295)PPS(0.295)LPLGFLGEGDAVTK 113.99 7.31E-05 19323000 16229 15655 10933 6966.5 15080 17127 20205 18913 11712 19262 TRUE FALSE FALSE 15091.43091 14414.44079 15166.5504 16218.36407 13188.52578 15014.04487 15149.49529 14606.92277 12727.20559 14438.66983 1.045209226 0.998321934 1.050411886 1.123258878 0.913416952 1.039849588 1.049230675 1.011652939 0.881466627 1 13.81765022 -7.594193455 8.191179577 0.941426939 1.030190538 0.288839882 0.056066795 0.329924526 33.33439179 0.037234027 0.013938632 2.55E-08 7.594193455 0.088763599 DLQSPDFT(ph)TGFHSDKIEAK ddPTM_HeLa_A485_30min_R1 1 DLQSPDFTTGFHSDKIEAK 19 1 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(0.237)PDFT(0.606)T(0.156)GFHSDKIEAK 152.23 1.41E-08 209140000 153720 142730 100720 250770 208100 188970 289250 300680 151480 310690 TRUE FALSE FALSE 187914.4837 159421.0319 137980.5193 264468.9301 187380.8333 198864.177 227449.3745 226937.7586 181880.6465 233240.7008 0.805667634 0.683504343 0.591579938 1.133888422 0.803379653 0.852613529 0.975170173 0.972976662 0.779798062 1 17.83146004 -5.243474608 24.99863006 0.923234159 0.692576008 0.499176529 0.108829423 699.4994448 973377.5112 0.028908038 0.049942632 5.71E-06 5.243474608 -0.230658151 DLQSS(ph)PPSLPLGFLGEGDAVTK ddPTM_HeLa_A485_30min_R1 1 DLQSSPPSLPLGFLGEGDAVTK 22 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 DLQS(0.01)S(0.82)PPS(0.171)LPLGFLGEGDAVTK 137.64 4.54E-07 17369000 12153 11415 8923.7 12365 18801 12534 18455 19196 12178 19829 TRUE FALSE FALSE 14856.39292 12749.88495 12224.94798 13040.46864 16929.10643 13190.26086 14511.93849 14488.1509 14622.0129 14885.99523 0.998011399 0.856502018 0.821238203 0.876022627 1.137250561 0.886085254 0.974871903 0.973273918 0.982266397 1 13.86166806 DLRAS(ph)PKPTSK ddPTM_HeLa_A485_30min_R1 2 DLRASPKPTSK 11 2 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 DLRAS(1)PKPTSK;DLRAS(0.998)PKPT(0.002)SK ; 111.64 0.00022347 1554290000 2248230 1733570 1087230 3126200 2329500 2538600 3654300 3894900 1693420 4134500 TRUE FALSE FALSE 2748341.007 1936295.931 1489441.62 3296976.39 2097566.801 2671517.171 2873528.952 2939669.668 2033273.861 3103845.24 0.885463287 0.623837782 0.479869808 1.062223189 0.675796194 0.860712105 0.925796465 0.947105748 0.65508223 1 21.56562519 -5.258625915 24.98873458 0.866231593 0.659135055 0.288306383 0.152276687 324.1031822 2878616.924 0.04091945 0.067031873 5.51E-06 5.258625915 -0.207096538 DLRAS(ph)PKPTSK ddPTM_HeLa_A486_30min_R1 2 DLRASPKPTSK 11 2 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 DLRAS(1)PKPTSK;DLRAS(1)PKPTSK ; 112.96 0.000201 1187680000 2009580 1756910 819640 1037010 1839610 2172500 2796500 2538500 1309290 2876100 TRUE FALSE FALSE 1868718.819 1617686.053 1137026.559 2414211.688 1608868.96 1904479.038 2096786.122 1960538.965 1422780.311 2155905.84 0.866790555 0.750350977 0.527400844 1.11981314 0.746261238 0.883377652 0.972577783 0.909380609 0.659945479 1 21.03986274 -5.253719649 24.99958417 0.891069375 0.718397835 0.255991666 0.143225914 879.5029656 2848177.259 0.038258393 0.064712345 5.58E-06 5.253719649 -0.17267154 DLRNDEHTRR ddPTM_HeLa_A485_30min_R1 1 DLRNDEHTRR 10 2 C9JNR4;C9JX21;P61586 C9JNR4 RHOA Transforming protein RhoA 0 0 60.434 0.023838 35187000 8788.4 17512 16610 7757 17513 18782 21222 26498 13744 14337 FALSE FALSE TRUE 10743.34926 19559.87607 22754.7302 8180.745268 15769.34423 19765.39648 16687.74633 19999.32395 16502.29473 10763.04975 0.998169618 1.817317258 2.114152654 0.760076879 1.465137167 1.836412256 1.550466338 1.858146567 1.533235943 1 13.39379931 -6.042008487 24.76598106 1.613608119 1.451614422 0.011348385 0.418680555 1969.344849 1161017.098 0.13877209 0.13878475 9.08E-07 6.042008487 -0.161993697 DLRS(ph)QVVR ddPTM_HeLa_A485_30min_R1 2 DLRSQVVR 8 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;C9J668;D6RBU8;E7ERI8;E7EW49;O75122-3;Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 E3W994;E7ERI8;Q7Z460-4;Q7Z460 CLASP2;CLASP1 CLIP-associating protein 2;CLIP-associating protein 1 1 0 DLRS(1)QVVR;DLRS(1)QVVR ; 54.157 0.022518 1195840000 384710 502250 486820 375440 604450 467520 584410 610660 462570 537460 TRUE FALSE FALSE 470287.4123 560983.7685 666914.9763 395949.3365 544268.8356 491998.6243 459546.0293 460894.6775 555403.5561 403481.1132 1.165574786 1.390359425 1.652902588 0.981333013 1.348932621 1.219384522 1.138953012 1.142295544 1.376529255 1 18.62214162 -5.26901394 24.99986811 1.186327076 1.401686985 0.294767102 0.162363873 753.3818695 2486539.777 0.044677775 0.067724303 5.38E-06 5.26901394 0.215359909 DLRS(ph)QVVR ddPTM_HeLa_A486_30min_R1 2 DLRSQVVR 8 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;C9J668;D6RBU8;E7ERI8;E7EW49;O75122-3;Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 E3W994;E7ERI8;Q7Z460-4;Q7Z460 CLASP2;CLASP1 CLIP-associating protein 2;CLIP-associating protein 1 1 0 DLRS(1)QVVR;DLRS(1)QVVR ; 54.157 0.022518 979510000 382040 387310 364230 125228 462020 359430 367520 431320 338340 415520 TRUE FALSE FALSE 355260.9689 356618.145 505269.6104 291537.1127 404069.1434 315087.181 275562.6088 333117.8516 367667.5836 311471.0874 1.140590518 1.144947828 1.622203893 0.936000561 1.297292621 1.011609725 0.884713284 1.069498471 1.180422834 1 18.24873872 -5.949095305 1.488205997 1.030478857 1.256523333 0.21224774 0.178725147 0.617542377 2.817416288 0.071299868 0.08309106 1.12E-06 5.949095305 0.226044476 DLS(ph)LEEIQK ddPTM_HeLa_A485_30min_R1 6 DLSLEEIQK 9 0 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949 STMN1;STMN2 Stathmin;Stathmin-2 1 0 DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK ;;;;; 176.42 1.58E-06 702202000 832574 739457 512785 1417549 1101096 802888 1379073 1326832 701571 1796840 TRUE FALSE FALSE 1017777.214 825930.0637 702485.5103 1494986.112 991467.0161 844925.9742 1084422.788 1001424.372 842369.8645 1348920.856 0.754512178 0.61228949 0.520775928 1.108283044 0.735007552 0.626371792 0.803918764 0.742389271 0.624476863 1 20.36337427 -11.31716468 2.266044833 2.426340547 0.727444426 0.228821627 0.151225039 12127838.76 2064176.494 88149963.29 0.038530854 4.82E-12 11.31716468 -1.698896121 DLS(ph)LEEIQK ddPTM_HeLa_A486_30min_R1 4 DLSLEEIQK 9 0 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949 STMN1;STMN2 Stathmin;Stathmin-2 1 0 DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK ;;; 233.02 3.31E-13 995050000 1084880 985940 457122 596817 913350 1213300 1644210 1431460 771870 1644490 TRUE FALSE FALSE 1008835.514 907810.5237 634131.8806 1389420.137 798789.1263 1063615.382 1232811.267 1105547.807 838776.3131 1232699 0.818395662 0.736441356 0.514425566 1.127136582 0.648000141 0.862834627 1.000091074 0.896851386 0.680438869 1 20.23338914 -5.247436623 24.98358423 0.877243149 0.694422944 0.258527379 0.152976419 1187.362841 2118478.446 0.040650454 0.069945929 5.66E-06 5.247436623 -0.182820205 DLS(ph)LEVDRDR ddPTM_HeLa_A485_30min_R1 2 DLSLEVDRDR 10 1 E7EMW7;O95071-2;O95071;E5RFK7 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 DLS(1)LEVDRDR;DLS(1)LEVDRDR ; 109.22 0.00016703 0 241900 232290 213366 315340 288620 229220 327700 286050 228270 373710 TRUE FALSE FALSE 295709.8205 259454.2948 292298.9623 332566.2257 259883.9794 241221.6048 257684.2179 215895.789 274081.6952 280550.9746 1.054032412 0.924802686 1.041874699 1.185403922 0.92633426 0.859813818 0.918493398 0.76954211 0.976940806 1 18.0979034 -5.978820177 24.93139861 0.891586313 1.043547354 0.408346281 0.083668096 221.8079601 261095.418 0.025856456 0.02931592 1.05E-06 5.978820177 0.151961041 DLS(ph)LEVDRDR ddPTM_HeLa_A486_30min_R1 1 DLSLEVDRDR 10 1 E7EMW7;O95071-2;O95071;E5RFK7 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 DLS(1)LEVDRDR 107.39 0.00018845 0 204780 207370 147310 101860 198600 223000 251970 227160 164510 285030 TRUE FALSE FALSE 190425.9795 190937.246 204352.3771 237135.2277 173689.7361 195488.5273 188924.4409 175440.6269 178769.8593 213656.6328 0.891271088 0.893664023 0.956452297 1.10988938 0.812938657 0.914965872 0.884243276 0.821133538 0.836715701 1 17.70493458 DLS(ph)MSEEDQMMR ddPTM_HeLa_A486_30min_R1 2 DLSMSEEDQMMR 12 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DLS(0.996)MS(0.004)EEDQMMR;DLS(0.993)MS(0.007)EEDQMMR ; 163.33 2.69E-10 795590000 328180 334190 308790 175799 409360 348160 411630 412800 281070 426340 TRUE FALSE FALSE 305176.2767 307707.5673 428361.7577 409268.9564 358014.2517 305207.559 308635.8202 318814.4514 305433.3739 319581.689 0.954924163 0.9628448 1.34038267 1.280639569 1.120258964 0.955022048 0.965749387 0.997599244 0.955728643 1 18.28582522 -6.214274191 5.681279231 0.974030422 1.143595412 0.323148648 0.113172838 0.275316594 21.97513928 0.042416996 0.04190081 6.11E-07 6.214274191 0.16956499 DLS(ph)PEPAPDEGPRR ddPTM_HeLa_A485_30min_R1 1 DLSPEPAPDEGPRR 14 1 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 0 DLS(1)PEPAPDEGPRR 78.078 0.003535 270200000 305730 279390 258430 274530 370800 317260 432910 385510 303930 378130 TRUE FALSE FALSE 373738.5837 312062.2301 354034.0112 289526.8788 333881.85 333871.243 340415.242 290963.068 364925.9632 283869.15 1.316587533 1.099317168 1.247173253 1.019930763 1.176182231 1.176144865 1.199197736 1.024990099 1.285542875 1 18.11486654 -11.39885309 1.968097629 4.29E-05 1.164062824 0.222695283 0.095269709 1373281.55 159200.3995 6084567.242 0.022094097 3.99E-12 11.39885309 1.164019944 DLS(ph)PEPAPDEGPRR ddPTM_HeLa_A486_30min_R1 2 DLSPEPAPDEGPRR 14 1 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 0 DLS(1)PEPAPDEGPRR;DLS(1)PEPAPDEGPRR ; 97.502 0.0003891 378070000 780230 823670 593740 279910 908900 792800 880210 915890 754210 909810 TRUE FALSE FALSE 725539.9061 758399.3894 823652.0289 651644.6259 794897.2868 694992.3966 659972.1481 707361.8407 819585.5301 681987.6541 1.063860763 1.112042696 1.207722785 0.955507951 1.165559643 1.019068883 0.967718615 1.037206226 1.201760069 1 19.3793861 -5.254729084 24.99324222 1.05125073 1.126292133 0.162103197 0.08152001 1054.26654 3926721.823 0.022170163 0.037370054 5.56E-06 5.254729084 0.075041403 DLS(ph)PPRYDSLVQSQAR ddPTM_HeLa_A485_30min_R1 1 DLSPPRYDSLVQSQAR 16 1 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 DLS(1)PPRYDSLVQSQAR 88.755 0.00054671 305860000 113430 117020 116650 122360 156560 133270 164360 159700 119230 180960 TRUE FALSE FALSE 138662.1122 130704.4711 159803.6892 129044.217 140972.3367 140247.8111 129243.1433 120533.3246 143158.3674 135850.0023 1.020700109 0.962123436 1.176324523 0.949902207 1.03770581 1.032372534 0.951366515 0.887253018 1.053797313 1 17.05165506 -6.75596744 24.37870411 0.963708625 1.030156459 0.13315642 0.069293933 172.5027328 768543.6917 0.026239856 0.019717289 1.75E-07 6.75596744 0.066447834 DLS(ph)PPRYDSLVQSQAR ddPTM_HeLa_A486_30min_R1 1 DLSPPRYDSLVQSQAR 16 1 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 DLS(1)PPRYDSLVQSQAR 135.91 3.83E-06 1020100000 240170 276860 206250 102270 304280 264500 294150 309300 218520 307580 TRUE FALSE FALSE 223335.3232 254920.6053 286115.5236 238089.7284 266114.3651 231868.6792 220550.5588 238879.142 237461.4895 230559.966 0.9686648 1.105658583 1.240959255 1.032658586 1.154208902 1.005676238 0.956586534 1.036082483 1.029933746 1 17.8147825 -6.282359391 22.9822773 1.004844088 1.104762592 0.314756689 0.069767577 356.7254318 391888.5755 0.024833916 0.021933315 5.22E-07 6.282359391 0.099918504 DLS(ph)PQHMVVR ddPTM_HeLa_A485_30min_R1 4 DLSPQHMVVR 10 0 A0A2R8Y5E8;D6RB22;A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590 A0A2R8Y5E8 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 1 0 DLS(1)PQHMVVR;DLS(1)PQHMVVR;DLS(1)PQHMVVR;DLS(1)PQHMVVR ;;; 182.1 1.05E-09 1142810000 725470 912790 682850 862510 891000 951090 1167560 1183270 745400 1403370 TRUE FALSE FALSE 886848.2987 1019532.85 935464.6308 909626.7373 802288.9115 1000887.602 918101.2679 893071.1772 894994.9428 1053535.686 0.841782875 0.967725027 0.887928756 0.863403821 0.761520395 0.950027242 0.871447716 0.847689536 0.849515545 1 20.00680775 -10.12692705 5.159838395 1.000003979 0.87273133 0.333318567 0.054598366 2.53E-06 4.28E-07 0.053453423 0.012963954 7.47E-11 10.12692705 -0.127272649 DLS(ph)PQHMVVR ddPTM_HeLa_A486_30min_R1 2 DLSPQHMVVR 10 0 A0A2R8Y5E8;D6RB22;A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590 A0A2R8Y5E8 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 1 0 DLS(1)PQHMVVR;DLS(1)PQHMVVR ; 184.34 8.90E-10 1389350000 632530 763370 556760 249810 789920 719060 811540 811610 679220 820530 TRUE FALSE FALSE 588192.9134 702877.7811 772352.3825 581570.3047 690840.8679 630349.6881 608484.1084 626824.1203 738095.3365 615063.9472 0.956311805 1.142771876 1.255726963 0.945544455 1.123201695 1.024852279 0.989302187 1.019120245 1.20003024 1 19.23037689 -5.279364741 24.9975519 1.044276248 1.120720415 0.113910609 0.095902236 1756.512858 2449515.456 0.02688354 0.039976419 5.26E-06 5.279364741 0.076444166 DLS(ph)PTLIDNSAAK ddPTM_HeLa_A485_30min_R1 6 DLSPTLIDNSAAK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 DLS(1)PTLIDNSAAK;DLS(1)PTLIDNSAAK;DLS(0.991)PT(0.009)LIDNSAAK;DLS(1)PTLIDNSAAK;DLS(1)PTLIDNSAAK;DLS(0.918)PT(0.082)LIDNSAAK ;;;;; 278.62 1.16E-48 1965670000 2547010 2116730 1427540 3235720 2421200 2100900 3255350 2910330 2065780 4187260 TRUE FALSE FALSE 3113583.587 2364263.16 1955646.451 3412479.19 2180136.827 2210899.875 2559817.879 2196567.004 2480363.098 3143453.143 0.990497853 0.752122921 0.622133164 1.085582967 0.693548377 0.703334764 0.81433308 0.69877517 0.789056806 1 21.58391883 -4.255754111 23.94008678 0.784199038 0.990498013 0.149960295 0.13699709 620.3412107 2612048.081 0.032619306 0.27576784 5.55E-05 4.255754111 0.206298975 DLS(ph)PTLIDNSAAK ddPTM_HeLa_A486_30min_R1 6 DLSPTLIDNSAAK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 DLS(0.842)PT(0.158)LIDNSAAK;DLS(1)PTLIDNSAAK;DLS(1)PTLIDNSAAK;DLS(0.998)PT(0.002)LIDNSAAK;DLS(1)PTLIDNSAAK;DLS(0.999)PT(0.001)LIDNSAAK ;;;;; 269.87 2.35E-42 2355850000 4797873 4566990 1934799 1819008 3673479 4762690 5579590 5049890 3410613 6120900 TRUE FALSE FALSE 4461566.879 4205085.08 2684004.989 4234742.552 3212717.01 4175117.731 4183517.567 3900140.285 3706247.681 4588186.8 0.972403059 0.916502589 0.584981629 0.922966465 0.700214954 0.909971175 0.911801927 0.850039559 0.807780468 1 22.1294927 DLSSS(ph)PPGPYGQEMYAFR ddPTM_HeLa_A485_30min_R1 5 DLSSSPPGPYGQEMYAFR 18 0 O43741;O43741-2 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 DLSS(0.022)S(0.978)PPGPYGQEMYAFR;DLSS(0.009)S(0.991)PPGPYGQEMYAFR;DLSS(0.005)S(0.995)PPGPYGQEMYAFR;DLS(0.017)S(0.117)S(0.866)PPGPYGQEMYAFR;DLS(0.018)S(0.121)S(0.86)PPGPYGQEMYAFR ;;;; 268.82 1.54E-58 1354707000 1021755 1155428 1100268 1090459 1438261 1294585 1632511 1653105 1031323 1525344 TRUE FALSE FALSE 1249040.875 1290545.254 1507302.919 1150028.014 1295062.685 1362367.469 1283711.688 1247678.407 1238300.066 1145103.813 1.090766497 1.127011577 1.316302419 1.004300223 1.130956574 1.189732716 1.121043939 1.089576677 1.081386729 1 20.12704697 -7.964114717 0.896569133 1.000969534 1.144743986 0.255005533 0.074442625 0.852845909 1.554626268 0.071283994 0.025170563 1.09E-08 7.964114717 0.143774452 DLSSS(ph)PPGPYGQEMYAFR ddPTM_HeLa_A486_30min_R1 3 DLSSSPPGPYGQEMYAFR 18 0 O43741;O43741-2 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 DLSS(0.004)S(0.996)PPGPYGQEMYAFR;DLSS(0.018)S(0.982)PPGPYGQEMYAFR;DLS(0.06)S(0.334)S(0.606)PPGPYGQEMYAFR ;; 256.98 1.00E-57 1045680000 1221880 1306440 1093810 414100 1479890 1311620 1492110 1519660 1165770 1557350 TRUE FALSE FALSE 1136232.522 1202912.936 1517362.525 964045.7275 1294268.397 1149805.66 1118768.296 1173666.592 1266819.882 1167379.423 0.973318956 1.030438701 1.299802356 0.825820387 1.108695571 0.984945971 0.95835876 1.005385711 1.085182638 1 20.15484211 -5.273965544 24.99849621 0.99843973 1.094111896 0.171572251 0.10595809 1444.19407 2882179.637 0.02925806 0.043718505 5.32E-06 5.273965544 0.095672167 DLST(ph)PGLEK ddPTM_HeLa_A485_30min_R1 4 DLSTPGLEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DLST(1)PGLEK;DLS(0.002)T(0.998)PGLEK;DLS(0.011)T(0.989)PGLEK;DLS(0.02)T(0.98)PGLEK ;;; 166.87 4.30E-05 1523980000 6294500 5217280 3811070 7699100 7665300 6201200 8984900 8346100 4896450 9992500 TRUE FALSE FALSE 7694689.809 5827395.512 5220943.385 8119682.338 6902115.817 6525885.243 7065202.715 6299205.889 5879122.602 7501553.648 1.025746155 0.776825146 0.69598161 1.082400089 0.920091509 0.869937822 0.941831925 0.839720168 0.783720663 1 22.83875799 -5.243976976 24.99649522 0.911862016 0.827248425 0.112824402 0.10971536 1992.737389 2852493.873 0.03019358 0.052150929 5.70E-06 5.243976976 -0.084613591 DLST(ph)PGLEK ddPTM_HeLa_A486_30min_R1 4 DLSTPGLEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DLS(0.003)T(0.997)PGLEK;DLS(0.103)T(0.897)PGLEK;DLS(0.021)T(0.979)PGLEK;DLS(0.001)T(0.999)PGLEK ;;; 161.19 6.40E-05 1454730000 8557300 8004700 4452470 3690450 7785400 9260400 10976000 10483400 6233600 11319600 TRUE FALSE FALSE 7957477.46 7370378.419 6176585.625 8591554.105 6808882.536 8117946.001 8229688.708 8096558.671 6773933.467 8485098.482 0.937817926 0.868626149 0.727933287 1.012546186 0.802451798 0.956729733 0.969899021 0.954209157 0.798332922 1 23.01649997 -6.291850619 24.84390626 0.935101295 0.869846178 0.127177234 0.086387168 1448.367481 1183212.529 0.02983876 0.02631833 5.11E-07 6.291850619 -0.065255117 DLST(ph)SPKPS(ph)PIPS(ph)PVLGR ddPTM_HeLa_A486_30min_R1 1 DLSTSPKPSPIPSPVLGR 18 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 3 0 DLS(0.309)T(0.346)S(0.346)PKPS(0.999)PIPS(1)PVLGR 71.54 0.005102 101600000 94486 87347 48020 76321 83562 117560 152520 132870 73440 198680 TRUE FALSE FALSE 87863.01933 80425.30561 66614.63002 177679.145 73080.87478 103056.6425 114357.8828 102618.4015 79805.83833 148929.2348 0.589964888 0.540023627 0.447290487 1.193044101 0.490708724 0.691983965 0.767867256 0.689041354 0.535864153 1 17.18426746 -11.51065887 2.191700925 5.390957446 0.666391922 0.202687554 0.201629686 15985602 1315746.144 347597631.8 0.054910127 3.09E-12 11.51065887 -4.724565523 DLST(ph)SPKPSPIPS(ph)PVLGR ddPTM_HeLa_A485_30min_R1 1 DLSTSPKPSPIPSPVLGR 18 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 2 0 DLS(0.302)T(0.349)S(0.349)PKPS(0.001)PIPS(0.999)PVLGR 85.573 0.00092288 245640000 251080 187500 137720 402870 281340 253740 391080 347180 208650 551640 TRUE FALSE FALSE 306931.8798 209426.494 188668.359 424877.768 253328.8018 267025.434 307522.5632 262033.5606 250524.1411 414126.3002 0.741155246 0.505706819 0.455581688 1.025961809 0.611718699 0.644792262 0.742581582 0.632738275 0.604946223 1 18.6597113 -11.13008252 2.215137998 1.655886855 0.662194963 0.318265908 0.148052853 9640529.858 2509950.643 31759086.65 0.03794548 7.41E-12 11.13008252 -0.993691893 DLSTS(ph)PKPS(ph)PIPS(ph)PVLGR ddPTM_HeLa_A486_30min_R1 1 DLSTSPKPSPIPSPVLGR 18 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 3 0 DLS(0.324)T(0.324)S(0.354)PKPS(0.999)PIPS(1)PVLGR 49.638 0.0048656 0 101580 113330 52380 78764 102490 117000 163960 141050 84953 194440 TRUE FALSE FALSE 94459.76656 104349.3181 72662.93879 183366.5725 89634.74852 102565.7296 122935.4738 108935.9941 92316.79444 145750.9584 0.648090192 0.715942586 0.498541756 1.258081419 0.614985654 0.703705353 0.843462542 0.747411854 0.633387221 1 17.15314584 -11.46810784 2.144299525 3.560045546 0.746263443 0.138573589 0.193679146 7280802.73 386015.2756 91232856.73 0.04856926 3.40E-12 11.46810784 -2.813782103 DLSTS(ph)PKPSPIPS(ph)PVLGR ddPTM_HeLa_A486_30min_R1 1 DLSTSPKPSPIPSPVLGR 18 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 2 0 DLS(0.32)T(0.32)S(0.359)PKPS(0.003)PIPS(0.997)PVLGR 58.92 0.028089 171370000 198760 178690 132590 105070 191390 221750 257600 271080 176450 299420 TRUE FALSE FALSE 184827.9504 164529.9536 183932.3989 244608.2699 167384.0816 194392.7396 193145.7554 209361.0016 191744.8281 224443.2831 0.823495129 0.733058042 0.819505027 1.089844466 0.745774519 0.866110747 0.860554848 0.932801369 0.85431306 1 17.7759914 -7.21353963 0.024162271 1.780467132 6.42E-10 0.213515859 0.09231599 293.6180172 6.633198232 240.3681392 246.1730124 6.12E-08 7.21353963 -1.780467132 DLTDYLMK ddPTM_HeLa_A485_30min_R1 6 DLTDYLMK 8 0 P60709;A0A2R8Y793;P63267-2;Q562R1;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;;;; ;;;;; 204.65 6.42E-10 1532670000 3009000 2928860 2587060 3767140 4097980 3162930 4433410 3973550 3187580 5063040 FALSE FALSE TRUE 3678341.669 3271364.699 3544121.151 3972929.319 3689970.722 3328536.124 3486175.736 2999030.632 3827298.068 3800917.306 0.967751038 0.860677683 0.932438373 1.045255395 0.970810577 0.875719163 0.91719326 0.789028119 1.00694063 1 21.85791621 -6.25268482 24.36584367 0.904554056 0.953842814 0.048579332 0.072045735 1171.529789 3260623.899 0.024048961 0.023682956 5.59E-07 6.25268482 0.049288759 DLTDYLMK ddPTM_HeLa_A486_30min_R1 4 DLTDYLMK 8 0 P60709;A0A2R8Y793;P63267-2;Q562R1;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 191.63 1.39E-06 1474247000 2221520 2301620 1669282 1143066 3571310 2611770 2966610 2933640 2024440 2458070 FALSE FALSE TRUE 2065802.92 2119231.249 2315672.695 2661115.415 3123362.999 2289556.372 2224332.8 2265714.213 2199920.089 1842553.273 1.121163198 1.150160096 1.256773809 1.444254261 1.69512765 1.242599824 1.207201351 1.229660084 1.193951959 1 20.8132749 -7.988427017 0.939375503 1.006891367 1.318413156 0.26272858 0.156042187 0.916531615 1.828597736 0.167835444 0.057848381 1.03E-08 7.988427017 0.311521788 DLTNNNIPHLLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 DLTNNNIPHLLSPK 14 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 DLTNNNIPHLLS(1)PK 102.89 0.00036073 123460000 159300 146720 103420 214440 150900 153150 221200 191290 113940 250610 TRUE FALSE FALSE 194735.7354 163877.6277 141679.3617 226154.3142 135875.8662 161168.6972 173938.813 144375.8276 136806.7129 188137.5391 1.035071131 0.871052255 0.753062692 1.202069057 0.722215602 0.856653584 0.924530074 0.76739511 0.727163295 1 17.52142821 DLTNNNIPHLLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 DLTNNNIPHLLSPK 14 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 DLTNNNIPHLLS(1)PK 122.44 3.10E-05 157620000 259810 217590 114010 142880 195160 223150 282880 270350 171110 403590 TRUE FALSE FALSE 241598.6607 200347.376 158157.7253 332631.8608 170681.213 195620.0218 212100.432 208797.2067 185941.9526 302528.4371 0.798598185 0.66224312 0.52278631 1.099506096 0.564182378 0.646616972 0.701092545 0.690173819 0.614626362 1 18.20671123 -11.15003168 2.832290884 1.799185516 0.699590547 0.259769365 0.151934507 179146017.2 145959267.4 893591592 0.036837464 7.08E-12 11.15003168 -1.099594969 DLTQMADELRR ddPTM_HeLa_A486_30min_R1 1 DLTQMADELRR 11 1 P41227-2;P41227;C9JN83 P41227-2 NAA10 N-alpha-acetyltransferase 10 0 0 145.23 5.15E-07 45758000 86394 88628 60643 101170 99054 69577 94185 78567 54406 84990 FALSE FALSE TRUE 80338.22674 81604.7945 84125.59368 235528.8728 86629.72368 60993.29715 70618.91681 60679.00921 59121.95589 63707.95081 1.261039254 1.280920097 1.320488143 3.697009084 1.35979454 0.957389092 1.108478862 0.952455831 0.928015344 1 15.95918581 -5.992475681 24.99974484 1.012062879 1.896036173 0.291340114 0.661770021 255.3510721 848403.2599 0.217096076 0.245697114 1.02E-06 5.992475681 0.883973294 DLVEAVAHILGIR ddPTM_HeLa_A486_30min_R1 1 DLVEAVAHILGIR 13 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 90.913 0.030727 0 91706 55597 37490 100760 61173 116570 80016 75505 49125 132580 FALSE FALSE TRUE 85277.88297 51191.29124 52007.13202 234574.3721 53500.11192 102188.7786 59995.15048 58314.15976 53383.19455 99381.10505 0.858089502 0.515100846 0.52331006 2.36035182 0.538332834 1.028251583 0.603687697 0.586773107 0.537156379 1 16.60068396 -6.762657061 24.99997689 0.647468674 0.973063905 0.06780274 0.518061799 94.34994756 1936998.204 0.213920951 0.153345833 1.73E-07 6.762657061 0.325595231 DLVLPTQALPAS(ph)PALK ddPTM_HeLa_A485_30min_R1 3 DLVLPTQALPASPALK 16 0 J3KSZ6;U3KQ35;H3BR06;Q15554 J3KSZ6 TERF2 Telomeric repeat-binding factor 2 1 0 DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK ;; 275.91 1.61E-58 795240000 838860 830170 616230 1000980 989630 900870 1286690 1282200 715590 1306240 TRUE FALSE FALSE 1025461.513 927251.16 844199.1205 1055661.003 891098.9624 948038.1602 1011778.17 967738.4396 859202.3492 980618.4076 1.045729414 0.945577967 0.860884432 1.076525787 0.908711233 0.966775815 1.031775625 0.986865464 0.876184194 1 19.90333232 -4.254070847 23.82906175 0.962232497 1.045729492 0.135372737 0.063851901 968.9659886 3133381.168 0.015484119 0.151491917 5.57E-05 4.254070847 0.083496995 DLVLPTQALPAS(ph)PALK ddPTM_HeLa_A486_30min_R1 4 DLVLPTQALPASPALK 16 0 J3KSZ6;U3KQ35;H3BR06;Q15554 J3KSZ6 TERF2 Telomeric repeat-binding factor 2 1 0 DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK;DLVLPTQALPAS(1)PALK ;;; 301.77 8.06E-68 1588690000 1815720 1832890 1004800 737690 1657670 1827700 2189800 2118070 1435720 2479380 TRUE FALSE FALSE 1688447.404 1687645.121 1393885.469 1717379.601 1449749.571 1602216.957 1641888.879 1635831.698 1560169.366 1858527.11 0.908486831 0.908055154 0.749994693 0.924054103 0.780052959 0.862089634 0.883435528 0.880176398 0.839465487 1 20.8257283 -10.27764288 3.08149658 1.000836283 0.858685024 0.38261587 0.053518955 12816481.28 17022892.3 100146.3643 0.013789306 5.28E-11 10.27764288 -0.14215126 DLVMGS(ph)SPQLK ddPTM_HeLa_A485_30min_R1 3 DLVMGSSPQLK 11 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.581)S(0.419)PQLK;DLVMGS(0.5)S(0.5)PQLK;DLVMGS(0.5)S(0.5)PQLK ;; 130.1 4.39E-05 423200000 973750 799280 713760 1576470 1101980 901920 1302250 1100580 948840 2100940 TRUE FALSE FALSE 1190357.328 892748.8432 977809.526 1662588.564 992263.0019 949143.1366 1024013.649 830661.0294 1139263.485 1577214.323 0.754721353 0.566028871 0.619959832 1.054129765 0.629123758 0.601784502 0.649254597 0.526663382 0.722326362 1 20.58894729 -8.032285571 23.57444358 1.000000004 0.674195916 0.324799824 0.139692007 2673.44705 1952109.279 0.139438446 0.036002811 9.28E-09 8.032285571 -0.325804088 DLVMGS(ph)SPQLK ddPTM_HeLa_A486_30min_R1 3 DLVMGSSPQLK 11 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.762)S(0.238)PQLK;DLVMGS(0.767)S(0.233)PQLK;DLVMGS(0.5)S(0.5)PQLK ;; 214 6.88E-22 451270000 1720270 1806250 986380 679160 1551670 1886920 2057860 1895040 1547570 2225720 TRUE FALSE FALSE 1599687.956 1663116.172 1368332.752 1581118.803 1357045.08 1654130.995 1542961.662 1463580.76 1681714.614 1668385.225 0.958824097 0.996841825 0.820153962 0.947694081 0.813388335 0.991456272 0.92482338 0.877243899 1.007989395 1 20.67002101 -7.776264208 24.68402055 1.003994819 0.916187848 0.252651076 0.060327659 321.5177569 535323.4235 0.055683442 0.014627931 1.67E-08 7.776264208 -0.087806971 DLVMGS(ph)SPQLKR ddPTM_HeLa_A485_30min_R1 2 DLVMGSSPQLKR 12 1 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.5)S(0.5)PQLKR;DLVMGS(0.566)S(0.434)PQLKR ; 98.943 0.00070301 689080000 430550 453620 344020 490280 590690 569820 757050 836600 424280 661150 TRUE FALSE FALSE 526324.3621 506666.913 471287.3139 517062.7549 531878.8296 599654.8941 595300.083 631422.5383 509429.1043 496337.4726 1.060416332 1.020811325 0.949529987 1.041756433 1.071607241 1.208159624 1.199385732 1.272163746 1.026376473 1 18.92096185 -5.9903795 2.969677155 1.161393103 1.013352541 0.31599055 0.082319558 0.261025953 4.71245276 0.027297877 0.029835222 1.02E-06 5.9903795 -0.148040563 DLVMGSS(ph)PQLK ddPTM_HeLa_A485_30min_R1 1 DLVMGSSPQLK 11 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.17)S(0.83)PQLK 105.03 0.00075259 225180000 614060 490240 407900 923410 664290 570300 744120 626570 547930 1178700 TRUE FALSE FALSE 750655.5285 547569.3035 558799.1841 973853.5501 598150.9551 600160.0261 585132.6831 472902.7251 657894.5251 884871.7824 0.848321241 0.618812029 0.631502999 1.100558939 0.67597472 0.678245185 0.661262676 0.534430789 0.74349136 1 19.7551089 DLVMGSS(ph)PQLK ddPTM_HeLa_A486_30min_R1 1 DLVMGSSPQLK 11 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.268)S(0.732)PQLK 226.85 3.94E-18 279690000 753940 741700 422320 336780 675320 803550 829710 859520 624600 913150 TRUE FALSE FALSE 701092.6994 682924.9908 585853.6141 784040.8599 590615.0685 704416.1709 622107.7822 663826.0592 678740.8309 684491.2964 1.024253636 0.997711723 0.855896367 1.145435835 0.862852562 1.029109025 0.908861494 0.96980935 0.991598921 1 19.38467267 DLVMGSS(ph)PQLKR ddPTM_HeLa_A485_30min_R1 2 DLVMGSSPQLKR 12 1 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.024)S(0.976)PQLKR;DLVMGS(0.033)S(0.967)PQLKR ; 166.79 1.22E-10 4428100000 966690 1067820 775190 1164000 1283250 1206450 1675230 1822700 930820 1443540 TRUE FALSE FALSE 1181726.855 1192692.26 1061965.039 1227586.373 1155485.124 1269617.856 1317303.425 1375679.967 1117627.036 1083692.044 1.090463718 1.100582279 0.979950942 1.132781567 1.066248599 1.171567018 1.215569895 1.269438098 1.031314239 1 20.04752341 -6.259396876 24.82476526 1.159292236 1.073522003 0.098929913 0.083989144 278.5174351 3385125.377 0.02766613 0.026359821 5.50E-07 6.259396876 -0.085770233 DLVMGSS(ph)PQLKR ddPTM_HeLa_A486_30min_R1 4 DLVMGSSPQLKR 12 1 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.158)S(0.842)PQLKR;DLVMGS(0.043)S(0.957)PQLKR;DLVMGS(0.006)S(0.994)PQLKR;DLVMGS(0.111)S(0.889)PQLKR ;;; 139.73 2.74E-06 3795260000 2123440 2055890 1239490 1419370 2199340 2097680 2557950 2480160 1624540 2975990 TRUE FALSE FALSE 1974597.821 1892973.789 1719453.723 3304365.091 1923478.269 1838889.569 1917923.855 1915481.71 1765356.435 2230782.734 0.885159183 0.848569321 0.770784934 1.481258144 0.86224366 0.824324817 0.859753765 0.858659017 0.791361888 1 21.08911858 -5.94729227 24.9999774 0.855950763 0.995010045 0.104090707 0.186056476 233.4499483 110727.0179 0.059539515 0.067511454 1.13E-06 5.94729227 0.139059281 DLVQPDKPAS(ph)PK ddPTM_HeLa_A485_30min_R1 5 DLVQPDKPASPK 12 1 Q6PJT7;Q6PJT7-5;H0YJA2;Q6PJT7-2;Q6PJT7-9;G3V411;G3V4R5 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK ;;;; 191.52 3.63E-12 3750290000 3762868 2614721 1472621 8436370 3925980 3529915 7249510 6346090 2482577 11583070 TRUE FALSE FALSE 4599905.005 2920489.876 2017404.789 8897227.531 3535095.646 3714735.891 5700592.965 4789701.477 2980807.432 8695623.82 0.5289908 0.335857431 0.232002307 1.023184502 0.406537325 0.42719602 0.655570329 0.550817466 0.342793972 1 23.0518581 -11.13750284 2.435121029 2.072167395 0.504118112 0.338437668 0.209520965 16530389.18 3356615.121 98268586.35 0.05319752 7.29E-12 11.13750284 -1.568049283 DLVQPDKPAS(ph)PK ddPTM_HeLa_A486_30min_R1 6 DLVQPDKPASPK 12 1 Q6PJT7;Q6PJT7-5;H0YJA2;Q6PJT7-2;Q6PJT7-9;G3V411;G3V4R5 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK ;;;;; 176.49 1.72E-11 5348130000 9640280 8042570 2416673 8726390 6214080 11594410 17725260 14235980 5779770 23386610 TRUE FALSE FALSE 8964546.154 7405247.463 3352473.506 20315476.93 5434652.142 10164009.58 13290212.47 10994758.12 6280765.117 17530450.63 0.511369978 0.422421968 0.191237155 1.158867924 0.310012119 0.579791689 0.758121554 0.627180576 0.358277448 1 24.06335975 -14 0.242180454 3.508136923 0.51117925 0.208621671 0.25887012 284.1191125 2.833585234 352.7185625 0.397404394 1.00E-14 14 -2.996957673 DLVSSLTSGLLTIGDR ddPTM_HeLa_A485_30min_R1 2 DLVSSLTSGLLTIGDR 16 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ; ; 256.95 3.44E-42 37638000 21769.1 23094 25673.9 20528.1 28953.4 19512.4 28136.6 25152.7 21359.4 33094.8 FALSE FALSE TRUE 26611.56119 25794.64241 35171.74399 21649.49812 26070.69783 20534.03909 22124.98556 18983.96089 25646.03566 24844.87542 1.071108659 1.038227883 1.415653868 0.871386866 1.049339044 0.82648992 0.890525115 0.764099661 1.032246498 1 14.60066069 -5.306176112 24.99991877 0.909696406 1.16132028 0.459009432 0.126730323 375.1098556 209619.2499 0.035050026 0.051987799 4.94E-06 5.306176112 0.251623874 DLVSSLTSGLLTIGDR ddPTM_HeLa_A486_30min_R1 2 DLVSSLTSGLLTIGDR 16 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ; ; 315.59 1.62E-82 39654000 27413 30530 27444 11325.4 36697 29856 30684 33027 26336 30866 FALSE FALSE TRUE 25491.49026 28110.69161 38071.05178 26366.10355 32094.12007 26172.67027 23006.53866 25507.47307 28618.82568 23136.9527 1.101765241 1.21496949 1.645465255 1.139566818 1.387136867 1.131206457 0.994363387 1.102456033 1.236931503 1 14.49791124 -6.393762526 5.545683096 1.08838707 1.302953148 0.307886026 0.154451089 0.29960655 12.2835077 0.055735833 0.04881637 4.04E-07 6.393762526 0.214566078 DLVVPGSKPSGNDS(ph)CELR ddPTM_HeLa_A485_30min_R1 2 DLVVPGSKPSGNDSCELR 18 1 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 DLVVPGS(0.001)KPS(0.172)GNDS(0.827)CELR;DLVVPGS(0.004)KPS(0.232)GNDS(0.764)CELR ; 76.733 0.0020811 288280000 285470 223269 194346 395800 349580 265510 405090 348100 243271 525330 TRUE FALSE FALSE 348971.8166 249378.3674 266242.6728 417421.5518 314774.5878 279411.693 318539.2122 262727.9292 292093.2583 394374.899 0.884873296 0.632338336 0.675100453 1.058438437 0.798160807 0.708492589 0.807706609 0.666188264 0.740648705 1 18.5892082 -11.39542196 2.120707407 2.569608954 0.772419644 0.243504883 0.119094638 6049645.865 531974.9879 45637515.66 0.032564974 4.02E-12 11.39542196 -1.79718931 DLYANT(ph)VLSGGTTMYPGIADR ddPTM_HeLa_A485_30min_R1 1 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DLYANT(0.618)VLS(0.36)GGT(0.016)T(0.005)MYPGIADR 120.71 7.98E-05 54483000 32138 41747 41937 48034 62328 51123 58508 66778 36051 60024 TRUE FALSE FALSE 39286.98723 46628.9485 57451.24144 50657.97579 56122.40547 53799.72123 46007.28783 50400.5908 43286.10502 45061.12146 0.871859953 1.034793343 1.274962531 1.124205838 1.245472897 1.193927703 1.0209974 1.118493929 0.960608694 1 15.4595956 -9.949837226 6.721927555 0.999999992 1.104377073 0.046037367 0.120061165 1.70E-08 2.67E-09 0.120641942 0.029259966 1.12E-10 9.949837226 0.104377081 DLYANTVLS(ph)GGTTMYPGIADR ddPTM_HeLa_A485_30min_R1 1 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DLYANT(0.001)VLS(0.848)GGT(0.13)T(0.021)MYPGIADR 95.631 0.00073839 51691000 20440 34008 30015 37878 37911 36262 40634 46770 34144 40862 TRUE FALSE FALSE 24986.80748 37984.93977 41118.79753 39947.17923 34136.44773 38160.62225 31952.21395 35299.58417 40996.38761 30675.85541 0.814543137 1.238268314 1.340428718 1.302235217 1.1128116 1.243995375 1.04160792 1.150728601 1.336438286 1 14.90481595 DLYANTVLS(ph)GGTTMYPGIADR ddPTM_HeLa_A486_30min_R1 1 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DLYANTVLS(0.489)GGT(0.489)T(0.021)MYPGIADR 71.742 0.0055494 34745000 18867 16576 9918.3 10847 16314 16371 17688 21305 15881 18740 TRUE FALSE FALSE 17544.52073 15262.45739 13758.93138 25252.36418 14267.746 14351.31247 13262.27532 16454.31658 17257.57787 14047.38202 1.248953058 1.08649835 0.979465879 1.797656256 1.015687192 1.021636092 0.944110105 1.171343995 1.228526272 1 13.77801366 DLYANTVLSGGTTMYPGIADR ddPTM_HeLa_A485_30min_R1 6 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;; ;;;;; 361.23 1.84E-146 840413000 504473 642156 648163 502031 839640 675730 849551 885461 636125 742893 FALSE FALSE TRUE 616691.2784 717250.5582 887945.466 529455.6823 756042.4934 711110.1779 668037.4887 668300.3014 763789.4526 557703.447 1.105769171 1.286078761 1.592146275 0.949349847 1.355635325 1.275068644 1.197836399 1.19830764 1.369526146 1 19.08913866 -10.82136315 2.654423557 0.912787102 1.260105222 0.188046153 0.161348567 27712700.5 17089420.87 15391302.17 0.039130975 1.51E-11 10.82136315 0.34731812 DLYANTVLSGGTTMYPGIADR ddPTM_HeLa_A486_30min_R1 5 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 345 2.02E-126 645670000 363291 409746 365437 165838 503774 414637 421895 437833 370099 437255 FALSE FALSE TRUE 337826.1769 377276.2347 506943.9931 386079.245 440585.9674 363483.3027 316332.4086 338147.9837 402179.4793 327763.5019 1.030701024 1.151062374 1.546676156 1.177920185 1.344219124 1.10898041 0.965123959 1.03168285 1.227041684 1 18.32229569 -6.435161572 5.724078466 1.055648149 1.256108386 0.299393867 0.141970015 0.296409357 15.21981819 0.052259914 0.045598534 3.67E-07 6.435161572 0.200460237 DLYDAGVKR ddPTM_HeLa_A485_30min_R1 4 DLYDAGVKR 9 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2 Annexin A2;Annexin 0 0 ;;; ;;; 126.31 0.00069398 663984000 1112500 1260330 732219 1239830 1202050 1572910 1995140 2218490 1151540 2060230 FALSE FALSE TRUE 1359971.787 1407714.63 1003097.278 1307558.773 1082369.681 1655265.135 1568862.04 1674401.849 1382643.515 1546652.577 0.879300114 0.910168613 0.648560183 0.845412081 0.699814359 1.070224277 1.014359698 1.082597265 0.893958693 1 20.56071773 -6.268633477 24.99604253 1.017523553 0.797439272 0.604238684 0.087179947 390.4138819 1356497.508 0.030223671 0.027204479 5.39E-07 6.268633477 -0.220084281 DLYDAGVKR ddPTM_HeLa_A486_30min_R1 2 DLYDAGVKR 9 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2 Annexin A2;Annexin 0 0 ; ; 108.43 0.0024665 402910000 797920 927050 590560 376770 1254090 1018610 1127300 1221930 866830 1374810 FALSE FALSE TRUE 741989.9285 853587.1817 819240.6477 877139.6009 1096790.338 892944.2547 845237.6166 943723.2135 941967.5223 1030548.627 0.719995067 0.828284235 0.794955838 0.851138488 1.064278103 0.866474644 0.820182177 0.915748358 0.914044711 1 19.97498115 -5.525752875 24.99958016 0.920909354 0.79200698 0.488053407 0.068193284 85.46922527 743416.392 0.020726959 0.026911154 2.98E-06 5.525752875 -0.128902374 DLYIRPNIAQK(ac)R ddPTM_HeLa_A485_30min_R1 2 DLYIRPNIAQKR 12 2 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 1 ; DLYIRPNIAQK(1)R;DLYIRPNIAQK(1)R 155.02 0.0001456 196381000 86133 110341 133032 121443 163646 116137 153490 135688 119872 160538 FALSE TRUE FALSE 105292.9887 123244.4201 182246.0727 128077.1236 147352.8296 122217.7537 120695.6076 102410.3052 143929.2109 120518.8311 0.873664205 1.022615462 1.512179226 1.062714618 1.22265399 1.01409674 1.001466796 0.849745258 1.194246655 1 16.87889906 -6.356220928 6.911574068 1.000541533 1.148583309 0.1166329 0.172297059 0.542964409 34.07310006 0.062405327 0.054921709 4.40E-07 6.356220928 0.148041777 DLYIRPNIAQK(ac)R ddPTM_HeLa_A486_30min_R1 2 DLYIRPNIAQKR 12 2 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 1 ; DLYIRPNIAQK(1)R;DLYIRPNIAQK(1)R 166.04 1.85E-05 165412000 102357 133884 111154 45790 163081 122548 136997 140134 115294 128725 FALSE TRUE FALSE 95182.30287 123274.5442 154195.8056 106601.4341 142625.8603 107429.2737 102718.9016 108228.5473 125287.7768 96491.42214 0.986432791 1.27756998 1.598026044 1.104776277 1.478119579 1.113355689 1.064539203 1.121639052 1.298434348 1 16.55811308 -6.369171436 24.99481555 1.123752481 1.295365505 0.189015796 0.175080132 50.39096089 11660.96388 0.06113367 0.053914825 4.27E-07 6.369171436 0.171613025 DLYRPLS(ph)SDDLDSVGDSV ddPTM_HeLa_A486_30min_R1 1 DLYRPLSSDDLDSVGDSV 18 1 Q5VZY9 Q5VZY9 DCLK1 1 0 DLYRPLS(0.952)S(0.048)DDLDSVGDSV 174.68 1.66E-11 59995000 53407 68541 55851 20096 68377 56854 59932 67836 51739 59444 TRUE FALSE FALSE 49663.44509 63109.56154 77478.00294 46784.5036 59800.51907 49839.93153 44936.3797 52391.22365 56223.77818 44558.83548 1.114558865 1.416319813 1.738779798 1.049948974 1.342057494 1.118519615 1.008472937 1.175776321 1.261787423 1 15.44342391 -5.299222833 24.99927147 1.146438096 1.422529943 0.365741256 0.172597829 603.6519557 399402.7239 0.049092697 0.072818185 5.02E-06 5.299222833 0.276091847 DLYRPLSS(ph)DDLDSVGDSV ddPTM_HeLa_A485_30min_R1 1 DLYRPLSSDDLDSVGDSV 18 1 Q5VZY9 Q5VZY9 DCLK1 1 0 DLYRPLS(0.394)S(0.606)DDLDSVGDSV 115.34 0.00094287 83087000 128870 174310 148330 102410 169490 139040 172000 158450 123790 159990 TRUE FALSE FALSE 157536.6869 194694.0382 203203.4395 108004.399 152614.9805 146319.9194 135250.7949 119589.8891 148633.5175 120107.4374 1.311631405 1.620999019 1.691847265 0.899231566 1.270653873 1.218241955 1.126081763 0.995690955 1.237504694 1 16.87396596 -5.255138739 24.99871426 1.118870122 1.549443219 0.657020229 0.143714035 307.9462134 1221818.507 0.038791182 0.065124532 5.56E-06 5.255138739 0.430573097 DLYRPLSS(ph)DDLDSVGDSV ddPTM_HeLa_A486_30min_R1 1 DLYRPLSSDDLDSVGDSV 18 1 Q5VZY9 Q5VZY9 DCLK1 1 0 DLYRPLS(0.3)S(0.7)DDLDSVGDSV 127.32 0.00014464 87145000 103280 120220 90926 37555 120320 103640 117600 118660 89678 101540 TRUE FALSE FALSE 96040.60534 110693.3294 126134.9823 87429.93792 105228.3437 90853.95053 88175.23615 91643.70833 97451.36125 76113.72309 1.261804067 1.454315002 1.657191071 1.148675093 1.382514734 1.193660576 1.158466996 1.2040366 1.28033891 1 16.21586897 -5.800733153 1.258424438 1.179302719 1.438206423 0.381948401 0.137700292 0.484050848 1.614129274 0.055816521 0.077106502 1.58E-06 5.800733153 0.258903703 DMAECSTPLPEDCS(ph)PTHSPR ddPTM_HeLa_A485_30min_R1 1 DMAECSTPLPEDCSPTHSPR 20 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 DMAECSTPLPEDCS(0.736)PT(0.206)HS(0.058)PR 81.949 0.00024869 0 56856 42393 57619 78414 83824 50243 72341 71208 49360 106170 TRUE FALSE FALSE 69503.42105 47350.49258 78934.66583 82697.55827 75478.18824 52873.64579 56884.75438 53744.12635 59266.09924 79703.77291 0.872021719 0.594080943 0.990350431 1.037561401 0.946983881 0.66337695 0.713702154 0.674298397 0.743579596 1 16.2823604 -6.258822406 24.99340949 0.73580449 0.885832662 0.161648458 0.142257459 402.4721362 3843821.697 0.05002509 0.047859507 5.51E-07 6.258822406 0.150028172 DMAECSTPLPEDCS(ph)PTHSPR ddPTM_HeLa_A486_30min_R1 1 DMAECSTPLPEDCSPTHSPR 20 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 DMAECSTPLPEDCS(0.808)PT(0.151)HS(0.041)PR 98.165 0.00021076 302860000 37000 76241 59470 31800 87490 68698 88151 83323 52416 52749 TRUE FALSE FALSE 34406.49107 70199.3855 82498.37666 74032.00708 76516.18839 60222.73923 66094.68743 64352.17183 56959.46108 39540.30706 0.870162465 1.77538797 2.08643743 1.872317455 1.935144011 1.523072118 1.671577495 1.627508146 1.440541698 1 15.27103645 -8.220940253 0.990873926 0.998779119 1.71764415 0.300675996 0.31063659 1.066038553 2.095649809 0.305425139 0.100395009 6.01E-09 8.220940253 0.718865031 DMDEPS(ph)PVPNVEEVTLPK ddPTM_HeLa_A485_30min_R1 7 DMDEPSPVPNVEEVTLPK 18 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(0.991)PVPNVEEVT(0.009)LPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK ;;;;;; 245.74 1.41E-45 1408460000 974748 769342 578470 1326954 970478 882515 1287190 1086582 763619 1676037 TRUE FALSE FALSE 1191577.33 859309.8545 792470.1251 1399442.137 873853.8028 928722.1208 1012171.341 820096.0608 916870.329 1258231.821 0.94702527 0.682950344 0.629828392 1.112229172 0.694509381 0.73811686 0.804439471 0.65178455 0.728697458 1 20.26296632 DMDEPS(ph)PVPNVEEVTLPK ddPTM_HeLa_A486_30min_R1 5 DMDEPSPVPNVEEVTLPK 18 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK ;;;; 309.67 4.32E-89 1619970000 1107730 1003330 512388 441120 874840 1155420 1353880 1218260 860830 1470030 TRUE FALSE FALSE 1030083.847 923822.4767 710798.3558 1026949.653 765109.4096 1012876.028 1015124.904 940888.7924 935447.4375 1101924.92 0.934804022 0.838371526 0.64505153 0.931959732 0.694338966 0.919187877 0.921228739 0.853859256 0.848921211 1 20.0715945 DMES(ph)PTK ddPTM_HeLa_A485_30min_R1 1 DMESPTK 7 0 E7EVA0;P27816;P27816-6;P27816-2;H7C456 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMES(1)PTK 133.32 0.00064267 0 653000 451370 366220 932120 556000 464430 686750 548250 466590 1239000 TRUE FALSE FALSE 798257.5972 504153.7951 501700.0177 983039.3553 500642.6878 488746.8367 540020.2523 413790.8279 560230.3332 930140.1021 0.858212215 0.542019201 0.539381128 1.05687235 0.538244386 0.525455075 0.580579475 0.444869356 0.602307472 1 19.82708851 -10.21008463 4.546523284 1.000083407 0.626213028 0.283458602 0.175313869 243700815.4 42.56242545 244339.5221 0.043131374 6.16E-11 10.21008463 -0.373870379 DMES(ph)PTK ddPTM_HeLa_A486_30min_R1 2 DMESPTK 7 0 E7EVA0;P27816;P27816-6;P27816-2;H7C456 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMES(0.992)PT(0.008)K;DMES(0.998)PT(0.002)K ; 139.02 0.0015398 1096940000 1315700 1464310 820840 563270 1151760 1445110 1602870 1517920 1212850 1877510 TRUE FALSE FALSE 1223476.224 1348272.743 1138691.231 1311321.026 1007295.521 1266827.021 1201814.973 1172322.752 1317980.815 1407369.275 0.869335608 0.958009221 0.809092006 0.931753342 0.715729367 0.900138324 0.853944301 0.832988735 0.936485425 1 20.42456949 -7.973441821 4.082440374 0.999538809 0.859702574 0.340550665 0.063823279 0.197277178 7.91779361 0.059120076 0.015538323 1.06E-08 7.973441821 -0.139836236 DMES(ph)PTKLDVTLAK ddPTM_HeLa_A485_30min_R1 17 DMESPTKLDVTLAK 14 1 E7EVA0;P27816;P27816-6;P27816-2;H7C456 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMES(0.877)PT(0.123)KLDVTLAK;DMES(0.983)PT(0.017)KLDVTLAK;DMES(0.912)PT(0.088)KLDVTLAK;DMES(0.897)PT(0.103)KLDVTLAK;DMES(0.975)PT(0.025)KLDVTLAK;DMES(0.969)PT(0.031)KLDVTLAK;DMES(0.99)PT(0.01)KLDVTLAK;DMES(0.858)PT(0.142)KLDVTLAK;DMES(0.967)PT(0.033)KLDVTLAK;DMES(0.977)PT(0.023)KLDVTLAK;DMES(0.999)PT(0.001)KLDVTLAK;DMES(0.961)PT(0.038)KLDVT(0.001)LAK;DMES(0.993)PT(0.007)KLDVTLAK;DMES(0.997)PT(0.003)KLDVTLAK;DMES(0.941)PT(0.059)KLDVTLAK;DMES(0.939)PT(0.061)KLDVTLAK;DMES(0.998)PT(0.002)KLDVTLAK ;;;;;;;;;;;;;;;; 244.57 2.38E-34 1.24E+11 65063640 41616869 22840762 105633630 64935400 57630760 107133570 98127670 44322242 141217390 TRUE FALSE FALSE 79536822.25 46483599.81 31290510.35 111404127.7 58470203.57 60648217.48 84243607.57 74061705.07 53217309.42 106014493.6 0.750244797 0.438464574 0.295153137 1.050838654 0.551530282 0.572074774 0.794642362 0.69859981 0.501981452 1 26.65968627 -14 0.223798664 2.8846555 0.584750188 0.227143613 0.200949889 241.1223425 2.414380073 205.8392163 0.375141963 1.00E-14 14 -2.299905312 DMES(ph)PTKLDVTLAK ddPTM_HeLa_A486_30min_R1 20 DMESPTKLDVTLAK 14 1 E7EVA0;P27816;P27816-6;P27816-2;H7C456 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMES(0.873)PT(0.127)KLDVTLAK;DMES(0.907)PT(0.093)KLDVTLAK;DMES(0.88)PT(0.12)KLDVTLAK;DMES(0.973)PT(0.027)KLDVTLAK;DMES(0.983)PT(0.017)KLDVTLAK;DMES(0.927)PT(0.073)KLDVTLAK;DMES(0.971)PT(0.029)KLDVTLAK;DMES(0.979)PT(0.021)KLDVTLAK;DMES(0.739)PT(0.261)KLDVTLAK;DMES(0.981)PT(0.019)KLDVTLAK;DMES(0.966)PT(0.034)KLDVTLAK;DMES(0.555)PT(0.445)KLDVTLAK;DMES(0.992)PT(0.008)KLDVTLAK;DMES(0.964)PT(0.036)KLDVTLAK;DMES(0.995)PT(0.005)KLDVTLAK;DMES(0.978)PT(0.022)KLDVTLAK;DMES(0.877)PT(0.123)KLDVTLAK;DMES(0.924)PT(0.076)KLDVTLAK;DMES(0.681)PT(0.319)KLDVTLAK;DMES(0.801)PT(0.199)KLDVTLAK ;;;;;;;;;;;;;;;;;;; 249.54 8.78E-35 57708383000 39994390 31661661 11660108 23475010 25765871 42530360 59071170 51545790 26289651 62506610 TRUE FALSE FALSE 37190989.79 29152675.67 16175214.09 54651009.64 22534075.2 37283396.6 44290938.47 39809938.85 28568459.12 46854548.01 0.793754104 0.622195217 0.345221857 1.166397115 0.480936775 0.79572631 0.945285791 0.849649405 0.60972649 1 25.48168576 -5.24426118 24.99817063 0.817281862 0.590570929 0.2274895 0.207810419 1352.561357 1968280.629 0.054935456 0.094864191 5.70E-06 5.24426118 -0.226710932 DMESPT(ph)KLDVTLAK ddPTM_HeLa_A486_30min_R1 1 DMESPTKLDVTLAK 14 1 E7EVA0;P27816;P27816-6;P27816-2;H7C456 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMES(0.265)PT(0.73)KLDVT(0.005)LAK 113.86 0.00046143 4425800000 1451400 1022000 527960 741020 1019100 1448800 2110000 1798500 1011000 2300600 TRUE FALSE FALSE 1349664.355 941012.9979 732400.2513 1725132.009 891274.9753 1270061.786 1582055.683 1389020.811 1098634.294 1724514.786 0.782634261 0.545668269 0.424699317 1.000357911 0.51682652 0.736474861 0.917391776 0.805456017 0.637068643 1 20.71775907 -13.99999782 0.07386313 2.013876141 0.368261066 0.236207199 0.168207479 404.1413851 2.131628572 68.14080556 7.575816634 1.00E-14 13.99999782 -1.645615076 DMLGS(ph)LR ddPTM_HeLa_A485_30min_R1 4 DMLGSLR 7 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DMLGS(1)LR;DMLGS(1)LR;DMLGS(1)LR;DMLGS(1)LR ;;; 117.89 0.0022724 734620000 1023890 983740 941870 790980 1020820 715130 1216520 1268240 1123570 1153020 TRUE FALSE FALSE 1251650.798 1098779.836 1290306.907 834189.2345 919183.5765 752573.101 956600.5639 957202.1515 1349060.193 865593.3338 1.446003278 1.269394983 1.490661789 0.963719569 1.061911571 0.869430334 1.105138553 1.105833553 1.558538104 1 19.72332986 -5.258723712 24.99446735 1.08900121 1.388757518 0.380259657 0.179298514 266.3220838 2451163.137 0.05046 0.08253291 5.51E-06 5.258723712 0.299756309 DMLGS(ph)LR ddPTM_HeLa_A486_30min_R1 6 DMLGSLR 7 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DMLGS(1)LR;DMLGS(1)LR;DMLGS(1)LR;DMLGS(1)LR;DMLGS(1)LR;DMLGS(1)LR ;;;;; 121.85 0.0018966 888658000 1355942 1374078 807874 448181 925252 1315781 1548227 1948258 977834 1108494 TRUE FALSE FALSE 1260897.468 1265191.055 1120704.448 1043388.018 809198.2665 1153453.318 1160844.229 1504682.184 1062593.438 830919.8873 1.517471765 1.522639035 1.348751505 1.255702305 0.973858345 1.388164293 1.397059147 1.810863125 1.278815749 1 19.66434986 -6.632302839 4.534515103 1.438044913 1.319822905 0 0.237539668 0.805231278 28.4061978 0.096137219 0.073137667 2.33E-07 6.632302839 -0.118222009 DMLGSLRDS(ph)ALFVK ddPTM_HeLa_A485_30min_R1 3 DMLGSLRDSALFVK 14 1 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DMLGSLRDS(1)ALFVK;DMLGSLRDS(1)ALFVK;DMLGS(0.003)LRDS(0.997)ALFVK ;; 195.25 1.29E-18 1092203000 681962 564911 414190 520178 693960 583855 856289 915657 453394 719318 TRUE FALSE FALSE 833662.0942 630972.4274 567416.1169 548594.007 624866.9058 614424.745 673335.8599 691090.6851 544386.017 540005.2607 1.543803653 1.168456075 1.05076035 1.015904931 1.157149664 1.137812517 1.246906112 1.279785097 1.008112433 1 19.04261394 -4.268279698 4.174529333 1.125019417 1.575180162 0.654214627 0.093187765 0.137536464 5.402290119 0.024466222 0.18387265 5.39E-05 4.268279698 0.450160745 DMLGSLRDS(ph)ALFVK ddPTM_HeLa_A486_30min_R1 3 DMLGSLRDSALFVK 14 1 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DMLGSLRDS(1)ALFVK;DMLGSLRDS(1)ALFVK;DMLGS(0.003)LRDS(0.997)ALFVK ;; 220.42 5.17E-28 1126956000 1096051 1170097 744740.3 482781.5 1074795 1147975 1417488 1401522 796442.2 1116482 TRUE FALSE FALSE 1019223.485 1077374.252 1033123.689 1123939.73 939984.189 1006349.516 1062817.51 1082426.036 865478.4512 836907.6401 1.217844641 1.287327538 1.234453648 1.342967463 1.123163589 1.202461858 1.269934051 1.293363788 1.034138547 1 19.67470889 -7.804115107 7.130939215 1.011812738 1.245786898 0.722299982 0.056902189 0.117826444 14.95909637 0.054123638 0.014407499 1.57E-08 7.804115107 0.23397416 DMLPS(ph)PEQTLSPLSK ddPTM_HeLa_A485_30min_R1 1 DMLPSPEQTLSPLSK 15 0 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 DMLPS(0.924)PEQT(0.076)LSPLSK 140.22 8.52E-06 0 25821 36572 27049 35556 43127 36794 47373 41211 26755 48671 TRUE FALSE FALSE 31564.79237 40848.77727 37055.5507 37498.33425 38833.12445 38720.47695 37251.37155 31103.93763 32124.48309 36538.21542 0.863884347 1.117974066 1.014158745 1.026277113 1.06280846 1.059725454 1.019518089 0.851271396 0.879202301 1 15.15711855 -7.202395617 7.597731424 0.899148212 1.030095517 0.34248759 0.071077535 0.263546018 30.53142026 0.031890842 0.018274559 6.27E-08 7.202395617 0.130947305 DMPAT(ph)QGEDS(ph)T(ph)VK ddPTM_HeLa_A486_30min_R1 1 DMPATQGEDSTVK 13 0 Q86YC8;J3QS66;A0A1W2PS04 Q86YC8 STRADA 3 0 DMPAT(1)QGEDS(1)T(1)VK 55.567 0.03744 991020000 121930 293190 270160 18471 400740 269530 239200 259720 240760 89590 TRUE FALSE FALSE 113383.3366 269956.5566 374773.1871 43001.42147 350475.4524 236278.129 179349.63 200587.4256 261629.2707 67156.08087 1.688355473 4.019837863 5.580629219 0.640320592 5.218819322 3.518343029 2.670638722 2.986884033 3.895838877 1 16.03523042 -9.823835405 9.249122124 1.000141761 3.391013946 0.200183983 1.412423068 0 0 1.305959667 0.316741739 1.50E-10 9.823835405 2.390872185 DMPGGFLFEGLS(ph)DDEDDFHPNTR ddPTM_HeLa_A485_30min_R1 13 DMPGGFLFEGLSDDEDDFHPNTR 23 0 H3BUV9;Q96S82 H3BUV9 UBL7 Ubiquitin-like protein 7 1 0 DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR ;;;;;;;;;;;; 323.94 8.98E-106 7305119000 1921422.7 2532355 2476538.2 2027244.6 2905031 2484244.3 2921970.4 3256669 2313068.2 2545319 TRUE FALSE FALSE 2348836.551 2828491.889 3392712.738 2137987.839 2615795.913 2614315.49 2297667.554 2457965.821 2777279.771 1910817.816 1.229231029 1.480251997 1.775529152 1.11888628 1.368940509 1.36816575 1.202452444 1.286342319 1.453450846 1 20.8657588 -13.21888065 0.156025708 7.17E-10 1.476256283 0.282051084 0.173866546 134.4537761 1.52712091 43.11370699 0.836238814 6.04E-14 13.21888065 1.476256282 DMPGGFLFEGLS(ph)DDEDDFHPNTR ddPTM_HeLa_A486_30min_R1 13 DMPGGFLFEGLSDDEDDFHPNTR 23 0 H3BUV9;Q96S82 H3BUV9 UBL7 Ubiquitin-like protein 7 1 0 DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR ;;;;;;;;;;;; 347.28 1.56E-141 13264673000 3989033 4515507 3991126 1531231 5234187 4200381 4523561 5041994 3926503 4706297 TRUE FALSE FALSE 3709422.386 4157681.78 5536596.873 3564783.152 4577666.46 3682180.699 3391718.192 3894042.032 4266855.442 3527809.598 1.051480326 1.178544835 1.569414879 1.010480598 1.297594536 1.043758342 0.961423257 1.103812982 1.20949142 1 21.75034127 -6.273091233 24.06138808 1.063793376 1.226721435 0.20559285 0.154929811 757.8855139 1565047.414 0.054793362 0.048746842 5.33E-07 6.273091233 0.16292806 DMQGLS(ph)LDAASQPSK ddPTM_HeLa_A486_30min_R1 2 DMQGLSLDAASQPSK 15 0 E9PLZ8;Q96EY5;M0QZK6;E9PQA6;Q96EY5-3;E9PLL0 E9PLZ8 MVB12A Multivesicular body subunit 12A 1 0 DMQGLS(1)LDAASQPSK;DMQGLS(1)LDAASQPSK ; 176.81 6.75E-13 219579000 219853 279770 133703 121481 233570 422750 463990 541420 262840 352200 TRUE FALSE FALSE 204442.44 257600.0063 185476.3823 282813.9073 204273.4726 370595.4032 347894.7944 418150.4851 285623.1828 264006.8276 0.774383155 0.975732365 0.702543885 1.071237096 0.773743143 1.403734163 1.317749233 1.583862391 1.081878016 1 18.01021571 -6.262060798 24.99994034 1.3164552 0.869024008 0.563248849 0.182297577 38.09794156 1532674.178 0.058542916 0.054739785 5.47E-07 6.262060798 -0.447431192 DMS(ph)LKR ddPTM_HeLa_A485_30min_R1 4 DMSLKR 6 1 I3L379;I3L2C0;B7Z683;A0A0G2JQ41;A0A1C7CYZ0;Q12979-3;Q12979-4;Q12979-2;Q12979 I3L379 ABR Active breakpoint cluster region-related protein 1 0 DMS(1)LKR;DMS(1)LKR;DMS(1)LKR;DMS(1)LKR ;;; 84.498 0.010763 590270000 737490 547450 428852 1230260 1076120 748410 1387310 1112340 693320 1832760 TRUE FALSE FALSE 901542.1062 611469.5153 587502.2008 1297465.989 968977.7143 787595.5903 1090899.885 839536.8709 832462.9645 1375886.661 0.655244455 0.444418521 0.42699898 0.943003537 0.704256929 0.572427666 0.792870456 0.610178799 0.605037455 1 20.3919302 -14 0.182647999 2.432648086 0.570851783 0.356195241 0.145067564 162.6197982 1.572357152 85.17062957 0.46282159 1.00E-14 14 -1.861796304 DMS(ph)LKR ddPTM_HeLa_A486_30min_R1 3 DMSLKR 6 1 I3L379;I3L2C0;B7Z683;A0A0G2JQ41;A0A1C7CYZ0;Q12979-3;Q12979-4;Q12979-2;Q12979 I3L379 ABR Active breakpoint cluster region-related protein 1 0 DMS(1)LKR;DMS(1)LKR;DMS(1)LKR ;; 114.28 0.004663 523600000 614410 546570 279319 322769 583000 830920 1064360 1008880 463510 1171040 TRUE FALSE FALSE 571343.0318 503257.8026 387478.7972 751422.5438 509874.7037 728409.5386 798045.8703 779180.0477 503687.42 877803.9618 0.650877709 0.573314572 0.441418374 0.856025464 0.580852589 0.829808898 0.909139062 0.887646994 0.573803995 1 19.74353926 -5.831524358 1.09612166 0.836714728 0.571230208 0.364492329 0.141805028 0.554237512 1.421114688 0.062545303 0.087063348 1.47E-06 5.831524358 -0.26548452 DMS(ph)PLS(ph)ETEMALGK ddPTM_HeLa_A485_30min_R1 4 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 2 0 DMS(1)PLS(0.897)ET(0.103)EMALGK;DMS(1)PLS(0.851)ET(0.149)EMALGK;DMS(1)PLS(0.872)ET(0.128)EMALGK;DMS(1)PLS(0.875)ET(0.125)EMALGK ;;; 103.21 0.00038404 69887000 217922 164994 111778.9 290291 206543 160954 253637 196846 157897.2 381636 TRUE FALSE FALSE 266397.9971 184288.613 153130.5666 306148.8623 185978.8537 169381.3026 199445.3829 148569.2099 189585.7197 286501.1687 0.929832148 0.643238608 0.534484963 1.068578057 0.649138203 0.591206323 0.696141603 0.518564062 0.661727561 1 18.1281815 -4.253824117 23.77717986 0.69210473 0.929832376 0.122123473 0.17517009 955.0981606 2981962.14 0.042671723 0.426056769 5.57E-05 4.253824117 0.237727646 DMS(ph)PLS(ph)ETEMALGK ddPTM_HeLa_A486_30min_R1 1 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 2 0 DMS(1)PLS(0.815)ET(0.185)EMALGK 82.102 0.0079101 15842000 73259 61878 25787 29386 43268 64896 76015 63523 46773 83591 TRUE FALSE FALSE 68123.92241 56974.56192 35772.417 68412.09309 37840.92398 56889.79133 56995.243 49060.1996 50827.3213 62659.26951 1.087212202 0.909275872 0.570903831 1.091811214 0.603915818 0.90792299 0.909605928 0.782967947 0.811170026 1 15.93524033 -4.354328128 4.15914872 0.828629459 1.088791746 0.195637925 0.152482956 0.306590193 8.550778788 0.035494627 0.181792862 4.42E-05 4.354328128 0.260162287 DMS(ph)PLSET(ph)EMALGK ddPTM_HeLa_A486_30min_R1 1 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 2 0 DMS(0.999)PLS(0.411)ET(0.59)EMALGK 65.472 0.034925 11006000 39675 38317 21072 20019 31307 42895 41659 42001 32218 48174 TRUE FALSE FALSE 36893.98738 35280.62137 29231.64273 46605.2437 27380.18413 37603.05102 31235.47758 32438.28918 35010.68218 36110.91684 1.021685147 0.977007079 0.809496 1.290613692 0.758224563 1.041320861 0.864987109 0.898295918 0.969531799 1 15.14014743 DMS(ph)PLSETEMALGK ddPTM_HeLa_A485_30min_R1 10 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(0.981)PLS(0.008)ET(0.01)EMALGK;DMS(1)PLSETEMALGK ;;;;;;;;; 369.03 2.45E-109 1840359000 1647758 1161269 829366 2144536 1603428 1194017 1865460 1523927 1140346 2740438 TRUE FALSE FALSE 2014296.082 1297069.308 1136182.996 2261686.571 1443785.078 1256533.884 1466889.232 1150181.514 1369202.982 2057297.241 0.979098228 0.630472487 0.552269732 1.099348469 0.701787301 0.610769246 0.713017644 0.559074057 0.665534836 1 20.97231882 -4.249661304 23.86520693 0.713533994 0.979098533 0.157910153 0.173401732 1758.620912 3563263.781 0.042839098 0.64833248 5.63E-05 4.249661304 0.265564539 DMS(ph)PLSETEMALGK ddPTM_HeLa_A486_30min_R1 13 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK;DMS(1)PLSETEMALGK ;;;;;;;;;;;; 376.77 9.86E-110 2213100000 2911908 2756245 1347556 1252375 2227226 2987921 3636835 3244282 2266784 3561450 TRUE FALSE FALSE 2707798.286 2537830.108 1869365.772 2915592.292 1947866.547 2619301.686 2726860.416 2505629.811 2463270.662 2669639.739 1.014293519 0.950626435 0.700231475 1.092129492 0.729636482 0.981144252 1.021433857 0.938564771 0.922697781 1 21.34821364 DMSLKDS(ph)GSDLSHRPK ddPTM_HeLa_A485_30min_R1 1 DMSLKDSGSDLSHRPK 16 2 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 DMSLKDS(0.999)GS(0.001)DLSHRPK 193.54 1.01E-18 104080000 211710 177780 117890 269070 233970 230230 368750 358190 200320 351900 TRUE FALSE FALSE 258804.1591 198569.8245 161502.4168 283768.6128 210675.1253 242284.4868 289963.5501 270343.3409 240522.3866 264177.8062 0.979658976 0.751652182 0.611339836 1.074157655 0.797474732 0.917126576 1.097607533 1.023338579 0.910456446 1 18.01114974 -6.077113482 1.11251912 1.005973568 0.808851092 0.250757422 0.126782093 0.662102393 1.727935947 0.063073362 0.067872462 8.37E-07 6.077113482 -0.197122476 DMSLKDS(ph)GSDLSHRPK ddPTM_HeLa_A486_30min_R1 1 DMSLKDSGSDLSHRPK 16 2 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 DMSLKDS(1)GSDLSHRPK 180.8 4.79E-18 219580000 286880 255170 118510 84683 238620 327050 397940 358300 212000 371520 TRUE FALSE FALSE 266771.1934 234949.3999 164400.2458 197146.3036 208690.0546 286701.8962 298371.203 276722.9116 230376.3307 278488.9738 0.957923719 0.843657818 0.590329461 0.707914216 0.749365591 1.029491015 1.071393237 0.993658413 0.827236811 1 18.08726068 -6.256976897 24.73323145 0.989399383 0.760526318 0.504384148 0.106063045 289.0285994 1601937.836 0.038413843 0.037162145 5.53E-07 6.256976897 -0.228873065 DMSPLS(ph)ETEMALGK ddPTM_HeLa_A486_30min_R1 1 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMSPLS(0.98)ET(0.02)EMALGK 162.37 7.57E-12 26249000 96944 82256 32037 27265 59531 71466 72612 60499 57360 74881 TRUE FALSE FALSE 90148.72622 75737.73499 44442.58438 63474.2979 52064.06688 62649.25153 54443.70959 46724.69838 62332.01098 56130.31021 1.606061429 1.34931973 0.791775143 1.130838181 0.927557084 1.116139414 0.969952052 0.83243257 1.110487556 1 15.77649241 -4.569424274 4.675804717 0.987259457 1.555998726 0.771378468 0.111119532 0.074384011 3.513073501 0.027202084 0.082709664 2.70E-05 4.569424274 0.568739269 DMSPLSETEMALGKDVT(ph)PPPETEVVLIK ddPTM_HeLa_A485_30min_R1 6 DMSPLSETEMALGKDVTPPPETEVVLIK 28 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMSPLS(0.003)ET(0.002)EMALGKDVT(0.943)PPPET(0.052)EVVLIK;DMSPLSETEMALGKDVT(1)PPPETEVVLIK;DMSPLSETEMALGKDVT(0.999)PPPET(0.001)EVVLIK;DMSPLS(0.001)ET(0.004)EMALGKDVT(0.965)PPPET(0.029)EVVLIK;DMSPLSETEMALGKDVT(0.946)PPPET(0.054)EVVLIK;DMSPLSET(0.001)EMALGKDVT(0.999)PPPET(0.001)EVVLIK ;;;;; 145.23 8.98E-08 1055327000 829680 770952 553154.6 1188240 1199781 1155406 1850736 2033537 850216 1790063 TRUE FALSE FALSE 1014239.454 861108.13 757789.5052 1253150.542 1080326.591 1215901.272 1455311.134 1534808.862 1020846.553 1343833.238 0.754736098 0.640784962 0.563901445 0.932519384 0.803914177 0.904800713 1.082955157 1.142112592 0.759652704 1 20.35792269 -5.733875573 1.140933241 0.996558303 0.655350242 0.53162912 0.121689448 0.370067989 1.018863205 0.051667431 0.079052154 1.85E-06 5.733875573 -0.341208061 DMSPLSETEMALGKDVT(ph)PPPETEVVLIK ddPTM_HeLa_A486_30min_R1 5 DMSPLSETEMALGKDVTPPPETEVVLIK 28 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMSPLS(0.02)ET(0.019)EMALGKDVT(0.957)PPPET(0.004)EVVLIK;DMSPLSETEMALGKDVT(0.998)PPPET(0.002)EVVLIK;DMSPLSETEMALGKDVT(0.999)PPPETEVVLIK;DMSPLS(0.001)ET(0.003)EMALGKDVT(0.987)PPPET(0.009)EVVLIK;DMSPLSETEMALGKDVT(0.991)PPPET(0.009)EVVLIK ;;;; 150.07 3.65E-09 415140000 635829 478801 272405 363458 559041 598093 865455 824609 456406 852410 TRUE FALSE FALSE 591260.6705 440859.065 377887.5113 846148.5922 488920.8649 524306.3666 648909.0052 636863.5318 495967.6396 638960.9877 0.925347059 0.689962413 0.591409364 1.324257049 0.76518109 0.820560843 1.015569053 0.996717396 0.776209579 1 19.28536832 DNEESEQPPVPGT(ph)PTLR ddPTM_HeLa_A485_30min_R1 1 DNEESEQPPVPGTPTLR 17 0 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 0 DNEESEQPPVPGT(1)PTLR 257.06 9.06E-51 256630000 94271 135320 95903 102310 111150 113280 137280 145450 106500 287570 TRUE FALSE FALSE 115241.2587 151144.4969 131381.5106 107898.9362 100083.5157 119211.1656 107949.0065 109778.1594 127873.5731 215884.0913 0.533810796 0.700118735 0.608574304 0.499800312 0.463598383 0.552199863 0.500032244 0.508505091 0.592325133 1 17.71989741 -8.137540909 6.97534592 0.999999779 0.547588466 0.819707986 0.063501824 2.354913544 119.4816641 0.068052556 0.017622844 7.29E-09 8.137540909 -0.452411312 DNEESEQPPVPGT(ph)PTLR ddPTM_HeLa_A486_30min_R1 2 DNEESEQPPVPGTPTLR 17 0 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 0 DNEESEQPPVPGT(0.998)PT(0.002)LR;DNEESEQPPVPGT(1)PTLR ; 313.59 2.00E-78 628810000 177516 212329 151362 74766 254278 215575 217185 194896 227971 332660 TRUE FALSE FALSE 165073.0451 195503.2768 209973.42 174059.0265 222384.0822 188979.5483 162843.0159 150522.4353 247731.7098 249359.7707 0.661987475 0.78402092 0.8420501 0.698023687 0.891820206 0.757859007 0.653044456 0.603635602 0.993471036 1 17.92786921 -7.783683077 24.99854573 0.996736034 0.743471438 0.606465442 0.08368628 194.2873777 218343.463 0.084268938 0.021826681 1.65E-08 7.783683077 -0.253264595 DNIACVILTFK ddPTM_HeLa_A486_30min_R1 2 DNIACVILTFK 11 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 129.34 0.002446 17212200 29422 35035 27956.7 14984.7 37396 34423 36793 35452 31091 37211 FALSE FALSE TRUE 27359.66974 32258.699 38782.28295 34885.13888 32705.44498 30176.24025 27587.00224 27380.35351 33785.99291 27893.1234 0.980875083 1.15651082 1.390388677 1.250671658 1.172527168 1.08185232 0.989025211 0.98161662 1.211266033 1 14.76762187 -6.273210228 3.104934682 1.043610233 1.205815714 0.273332775 0.112478018 0.348787228 6.900821195 0.043678218 0.040286969 5.33E-07 6.273210228 0.162205481 DNIQGITKPAIR ddPTM_HeLa_A486_30min_R1 2 DNIQGITKPAIR 12 1 P62805 P62805 HIST1H4A Histone H4 0 0 ; ; 175.21 7.46E-11 491790000 417660 407320 314100 183259 1034690 351560 444520 507200 360260 377030 FALSE FALSE TRUE 388384.1908 375042.4798 435727.9319 426636.2134 904909.5321 308188.1016 333296.3943 391721.6321 391487.6269 282619.2339 1.374231277 1.327023906 1.541749037 1.509579541 3.20186818 1.090471081 1.179312497 1.386040244 1.385212257 1 18.10850013 DNKAQDWEKHFLDAS(ph)TSK ddPTM_HeLa_A485_30min_R1 2 DNKAQDWEKHFLDASTSK 18 2 Q96L12 Q96L12 CALR3 Calreticulin-3 1 0 DNKAQDWEKHFLDAS(0.333)T(0.333)S(0.333)K;DNKAQDWEKHFLDAS(0.333)T(0.333)S(0.333)K ; 54.223 0.013732 1906590000 2580300 542990 315070 8613500 607160 1473200 1063290 849780 315400 1904220 TRUE FALSE FALSE 3154278.833 606487.9571 431627.5042 9084033.694 546709.0185 1550334.474 836109.4052 641370.1226 378697.887 1429532.999 2.206509983 0.424256004 0.30193602 6.354546347 0.382438894 1.084504153 0.5848829 0.448657095 0.26491021 1 20.44711249 DNKAQDWEKHFLDAS(ph)TSK ddPTM_HeLa_A486_30min_R1 1 DNKAQDWEKHFLDASTSK 18 2 Q96L12 Q96L12 CALR3 Calreticulin-3 1 0 DNKAQDWEKHFLDAS(0.333)T(0.333)S(0.333)K 64.87 0.0050496 3220600000 905490 681620 241900 19100000 0 1262800 1063000 892100 122970 2610600 TRUE FALSE FALSE 842019.827 627605.9488 335570.1583 44465765.26 0 1107008.575 797026.1567 688988.3044 133629.1386 1956888.768 0.430284971 0.32071621 0.171481468 22.72268408 0 0.565698262 0.40729252 0.35208353 0.068286527 1 20.90013032 DNLAEDIMR ddPTM_HeLa_A485_30min_R1 3 DNLAEDIMR 9 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;; ;; 160.36 1.22E-05 118466000 174262 210851 191013 192187 239935 201172 262432 252725 181634 258359 FALSE FALSE TRUE 213025.9807 235508.1903 261676.6574 202685.6892 216046.2289 211705.0548 206361.2593 190743.7975 218086.2778 193954.856 1.098327647 1.214242299 1.349162701 1.045014769 1.113899561 1.091517166 1.063965417 0.983444299 1.124417724 1 17.56536137 -5.292351469 24.82433233 1.063316784 1.219944055 0.521975338 0.070236564 480.5940326 385946.0227 0.01988143 0.029492837 5.10E-06 5.292351469 0.156627272 DNLAEDIMR ddPTM_HeLa_A486_30min_R1 4 DNLAEDIMR 9 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;;; ;;; 154.01 0.0021425 357038000 492790 535400 415275 189580 896350 517590 570890 554680 466933 544340 FALSE FALSE TRUE 458247.9658 492972.9541 576080.6015 441351.8208 783921.4249 453735.0083 428047.2837 428391.4726 507407.1284 408033.7209 1.123063958 1.20816719 1.41184557 1.081655261 1.921217254 1.112003702 1.049048796 1.049892327 1.243542145 1 18.63832886 -6.482798425 24.9999722 1.08845605 1.348636807 0.247513913 0.225533578 769.7373413 480121.8435 0.078938891 0.069607713 3.29E-07 6.482798425 0.260180756 DNLLFGDEIITNGFHSCES(ph)DEEDR ddPTM_HeLa_A486_30min_R1 1 DNLLFGDEIITNGFHSCESDEEDR 24 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 DNLLFGDEIIT(0.002)NGFHS(0.313)CES(0.685)DEEDR 53.895 0.024296 26217000 16062 19807 8059.8 5083.7 12383 15434 14111 14823 12363 16072 TRUE FALSE FALSE 14936.13674 18237.42118 11180.77041 11835.11052 10829.80867 13529.91 10580.27855 11448.12648 13434.63479 12047.46659 1.239774075 1.5137972 0.928059881 0.982373384 0.898928301 1.12305022 0.878216052 0.950251773 1.115141901 1 13.55644218 -4.768951983 24.9999993 0.980745831 1.376785661 0.716988684 0.098561077 70.68508845 235224.3646 0.024242764 0.052084332 1.70E-05 4.768951983 0.39603983 DNNLLGK ddPTM_HeLa_A485_30min_R1 1 DNNLLGK 7 0 P11142;E9PKE3;P11142-2;E9PNE6;A8K7Q2;P54652;E9PS65;E9PM13 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 101.64 0.02939 36811000 53307 60472 48095 66062 79951 62619 83220 71998 59881 97903 FALSE FALSE TRUE 65164.95824 67543.67436 65887.3419 69670.79978 71990.79772 65897.63401 65439.36716 54340.37761 71898.56744 73497.58387 0.886627217 0.918991766 0.896455889 0.947933199 0.979498834 0.896595923 0.890360794 0.73934917 0.978243959 1 16.1654092 -6.508757088 22.27875189 0.882154787 0.926399818 0.000201317 0.070283694 429.5596801 677692.7996 0.024747248 0.020944561 3.10E-07 6.508757088 0.04424503 DNPAQDFSTLYGSS(ph)PLER ddPTM_HeLa_A485_30min_R1 1 DNPAQDFSTLYGSSPLER 18 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 DNPAQDFSTLYGS(0.033)S(0.967)PLER 208.87 1.54E-25 173820000 112020 156200 114980 126120 182180 121740 179000 153580 119950 174180 TRUE FALSE FALSE 136938.4625 174466.2312 157515.8867 133009.6162 164041.5195 128114.1182 140755.1877 115914.2642 144022.8648 130760.1315 1.047249348 1.334246373 1.204617071 1.017203139 1.254522442 0.979764372 1.076438101 0.886464879 1.101427959 1 16.99656321 -6.273159587 24.94168639 1.005949299 1.173865651 0.391466189 0.101405326 751.6141008 1599499.989 0.03468048 0.030849554 5.33E-07 6.273159587 0.167916352 DNPAQDFSTLYGSS(ph)PLER ddPTM_HeLa_A486_30min_R1 2 DNPAQDFSTLYGSSPLER 18 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 DNPAQDFSTLYGS(0.155)S(0.845)PLER;DNPAQDFSTLYGS(0.129)S(0.871)PLER ; 184.78 7.74E-18 247627000 270993 288202 227363 111307 326287 273239 326155 320967 238713 323212 TRUE FALSE FALSE 251997.7901 265363.8239 315404.0426 259128.3211 285361.042 239529.5503 244547.5693 247889.8208 259404.835 242277.6114 1.040120004 1.095288262 1.301829091 1.069551246 1.17782671 0.988657387 1.009369243 1.023164374 1.070692556 1 17.88630157 -6.26351155 24.99900348 1.019261516 1.140028587 0.419100251 0.069731229 192.6791597 2324494.87 0.024326358 0.022474188 5.45E-07 6.26351155 0.12076707 DNPS(ph)PEPQLDDIKR ddPTM_HeLa_A485_30min_R1 3 DNPSPEPQLDDIKR 14 1 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 DNPS(1)PEPQLDDIKR;DNPS(1)PEPQLDDIKR;DNPS(1)PEPQLDDIKR ;; 125.23 1.71E-05 285496000 338470 256070 191724 497510 283310 270420 409700 299290 253070 586700 TRUE FALSE FALSE 413761.4838 286015.159 262650.6859 524687.7115 255102.6616 284578.7731 322164.2481 225888.6582 303858.8277 440446.4874 0.939413744 0.649375502 0.596328256 1.191263244 0.579191046 0.646114298 0.731449239 0.51286289 0.689888185 1 18.74860722 DNPS(ph)PEPQLDDIKR ddPTM_HeLa_A486_30min_R1 4 DNPSPEPQLDDIKR 14 1 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 DNPS(1)PEPQLDDIKR;DNPS(1)PEPQLDDIKR;DNPS(1)PEPQLDDIKR;DNPS(1)PEPQLDDIKR ;;; 137.45 4.24E-06 433987000 636271 711550 336260 243777 525687 774790 790090 686960 572863 919370 TRUE FALSE FALSE 591671.6886 655164.1866 466468.8774 567525.1758 459750.4346 679204.2873 592401.1253 530554.2042 622519.2261 689153.7679 0.858548144 0.950679249 0.676871983 0.823510227 0.667123153 0.985562757 0.859606597 0.769863315 0.903309617 1 19.3944664 -6.275120457 24.99853384 0.886531036 0.798958865 0.223189929 0.098366098 1589.626012 2904610.612 0.035237871 0.031244681 5.31E-07 6.275120457 -0.087572171 DNQESS(ph)DAELSSSEYIK ddPTM_HeLa_A485_30min_R1 2 DNQESSDAELSSSEYIK 17 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 DNQES(0.003)S(0.997)DAELSSSEYIK;DNQESS(1)DAELSSSEYIK ; 452.37 4.82E-194 742800000 542550 477680 349910 729620 603280 516560 721490 580310 438670 931300 TRUE FALSE FALSE 663238.3757 533540.5207 479356.27 769477.2931 543215.325 543606.2828 567337.7675 437988.0626 526707.0453 699144.0493 0.948643382 0.763133894 0.685633054 1.100599074 0.776971964 0.777531159 0.811474786 0.626463263 0.753359835 1 19.41523021 -5.949863641 24.99999932 0.772159774 0.863772735 0.072981486 0.134245397 271.9674049 135612.4264 0.041434328 0.046982101 1.12E-06 5.949863641 0.091612961 DNQESS(ph)DAELSSSEYIK ddPTM_HeLa_A486_30min_R1 3 DNQESSDAELSSSEYIK 17 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 DNQES(0.004)S(0.996)DAELSSSEYIK;DNQESS(1)DAELSSSEYIK;DNQES(0.015)S(0.985)DAELSSSEYIK ;; 393.23 1.05E-135 1195170000 1662960 1753040 977010 724210 1563140 1893300 2187710 2058030 1541020 2275610 TRUE FALSE FALSE 1546395.092 1614122.726 1355334.437 1685997.48 1367076.405 1659723.896 1640321.819 1589461.495 1674596.854 1705782.444 0.906560562 0.946265294 0.794552929 0.988401238 0.801436555 0.97299858 0.961624282 0.931807864 0.981717721 1 20.70200223 DNS(ph)NS(ph)DS(ph)EGEDRRPAGPPREPVR ddPTM_HeLa_A486_30min_R1 1 DNSNSDSEGEDRRPAGPPREPVR 23 3 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 3 0 DNS(1)NS(1)DS(1)EGEDRRPAGPPREPVR 49.087 0.030006 654040000 168870 223830 140870 145110 218450 222910 276080 242950 150520 329680 TRUE FALSE FALSE 157033.085 206092.8956 195418.6366 337823.4135 191049.964 195409.6306 207001.8639 187635.5886 163567.1948 247125.9821 0.635437374 0.833958833 0.79076524 1.367008886 0.773087323 0.790728797 0.83763699 0.759270988 0.661877773 1 17.91488717 DNS(ph)NSDS(ph)EGEDRRPAGPPR ddPTM_HeLa_A486_30min_R1 1 DNSNSDSEGEDRRPAGPPR 19 2 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 2 0 DNS(0.5)NS(0.5)DS(1)EGEDRRPAGPPR 91.767 0.0020262 435440000 574280 674210 538860 237140 640400 728850 762240 728130 606710 717330 TRUE FALSE FALSE 534025.9376 620783.1442 747521.0232 552073.9044 560075.0605 638931.8974 571519.4898 562350.694 659300.1113 537705.899 0.993156182 1.154503131 1.390204245 1.026720937 1.041601109 1.188255324 1.062884917 1.045833224 1.226135165 1 19.03645777 DNS(ph)PEPNDPEEPQEVSSTPSDKK ddPTM_HeLa_A486_30min_R1 1 DNSPEPNDPEEPQEVSSTPSDKK 23 1 G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6 G5E9C0 SP110 Sp110 nuclear body protein 1 0 DNS(1)PEPNDPEEPQEVSSTPSDKK 69.444 0.0048717 478360000 63808 54417 17325 50137 43735 73681 101090 81858 42224 137780 TRUE FALSE FALSE 59335.3887 50104.79874 24033.70398 116721.4698 38249.34849 64590.98735 75796.21278 63220.72035 45884.01032 103278.9912 0.574515572 0.48514028 0.232706611 1.130156951 0.370349749 0.625402965 0.733897687 0.61213534 0.444272449 1 16.65618729 -11.39622656 2.123373319 3.895384373 0.582809479 0.234259009 0.228386272 24646600.23 2207082.34 343083352.6 0.055279183 4.02E-12 11.39622656 -3.312574895 DNS(ph)PLREK ddPTM_HeLa_A486_30min_R1 2 DNSPLREK 8 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 DNS(1)PLREK;DNS(1)PLREK ; 67.385 0.0045869 286090000 711790 679170 368050 580860 769450 893690 1353250 1270050 531340 1338190 TRUE FALSE FALSE 661897.1967 625350.0957 510568.8167 1352271.435 672938.4062 783435.6142 1014652.537 980887.34 577396.979 1003098.514 0.659852634 0.623418425 0.508991699 1.348094346 0.670859738 0.781015626 1.011518333 0.977857435 0.575613433 1 19.93603187 DNS(ph)PPPAFKPEPPK ddPTM_HeLa_A486_30min_R1 4 DNSPPPAFKPEPPK 14 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 DNS(1)PPPAFKPEPPK;DNS(1)PPPAFKPEPPK;DNS(1)PPPAFKPEPPK;DNS(1)PPPAFKPEPPK ;;; 171.26 1.02E-09 1395020000 2326984 2309218 995292 1910840 1634994 3208236 4379339 3375857 1855398 5620020 TRUE FALSE FALSE 2163874.438 2126227.156 1380695.717 4448532.089 1429917.807 2812436.461 3283582.062 2607248.056 2016225.393 4212730.412 0.513651297 0.504714745 0.327743668 1.055973598 0.339427798 0.667604187 0.779442723 0.618897437 0.478602995 1 22.00632416 -14 0.19314751 2.715009506 0.524293322 0.264503553 0.204778752 193.4609952 1.899657676 128.5350472 0.527412336 1.00E-14 14 -2.190716185 DNSNS(ph)DS(ph)EGEDRRPAGPPREPVR ddPTM_HeLa_A485_30min_R1 2 DNSNSDSEGEDRRPAGPPREPVR 23 3 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 2 0 DNS(0.444)NS(0.557)DS(1)EGEDRRPAGPPREPVR;DNS(0.214)NS(0.821)DS(0.964)EGEDRRPAGPPREPVR ; 65.275 0.0074625 1960200000 401117 507150 450770 446890 611160 487490 672250 671300 446290 606080 TRUE FALSE FALSE 490344.0928 566456.7809 617528.5811 471302.4691 550310.7645 513014.2226 528618.2957 506662.6224 535856.3094 454995.4101 1.077690196 1.244972517 1.357219364 1.035840052 1.209486409 1.12751516 1.161810172 1.113555458 1.177718055 1 18.79549247 -14 0.151360148 0.37604337 1.222509371 0.264912141 0.085306489 178.0308951 1.591572551 33.20028481 0.420634323 1.00E-14 14 0.846466001 DNTFFRES(ph)PVGR ddPTM_HeLa_A485_30min_R1 9 DNTFFRESPVGR 12 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8;F8VPY7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNT(0.002)FFRES(0.998)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR ;;;;;;;; 221.62 3.75E-23 40515300000 6306240 8336100 8164810 7081410 10893750 8185590 10144180 11499880 7687680 9319480 TRUE FALSE FALSE 7709041.332 9310934.381 11185312.99 7468249.497 9809130 8614174.835 7976793.073 8679516.399 9230526.86 6996305.148 1.101873227 1.330835946 1.59874573 1.067456227 1.402044335 1.231246301 1.140143676 1.24058574 1.319343091 1 22.73816178 -6.509750737 23.08997141 1.193728066 1.306659762 0.116714473 0.158911737 560.5791437 985972.2845 0.056884297 0.047843129 3.09E-07 6.509750737 0.112931696 DNTFFRES(ph)PVGR ddPTM_HeLa_A486_30min_R1 8 DNTFFRESPVGR 12 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8;F8VPY7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR;DNTFFRES(1)PVGR ;;;;;;; 177.04 1.24E-11 34156420000 9293390 9615030 7717330 3305294 11043820 8997480 10686260 10942760 7887080 10242470 TRUE FALSE FALSE 8641971.352 8853100.005 10705686.85 7694891.472 9658601.116 7887462.397 8012444.72 8451332.427 8570738.445 7677688.845 1.125595414 1.153094399 1.394389258 1.0022406 1.258008928 1.027322487 1.043601126 1.100765165 1.116317504 1 22.87224066 -6.271994684 24.94977737 1.063024068 1.186095004 0.299619572 0.098487698 961.9807636 2273845.829 0.033790295 0.030109794 5.35E-07 6.271994684 0.123070936 DNTFFRES(ph)PVGRK ddPTM_HeLa_A485_30min_R1 3 DNTFFRESPVGRK 13 2 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8;F8VPY7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DNT(0.022)FFRES(0.978)PVGRK;DNTFFRES(1)PVGRK;DNTFFRES(1)PVGRK ;; 172.97 1.33E-12 679390000 459110 543750 425970 451920 829690 732880 1131020 1408850 504800 736910 TRUE FALSE FALSE 561237.4356 607336.8325 583554.0291 476607.2453 747083.1504 771252.4636 889368.3374 1063327.329 606108.7297 553211.8988 1.014507166 1.097837617 1.054847212 0.861527466 1.350446641 1.39413571 1.60764499 1.922097718 1.095617667 1 19.07747266 -5.912417825 4.842594072 1.464863458 1.018650744 0.355412091 0.249198257 0.207951287 8.508262831 0.077645101 0.088447105 1.22E-06 5.912417825 -0.446212714 DNTFFRES(ph)PVGRK ddPTM_HeLa_A486_30min_R1 3 DNTFFRESPVGRK 13 2 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8;F8VPY7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DNT(0.003)FFRES(0.997)PVGRK;DNTFFRES(1)PVGRK;DNTFFRES(1)PVGRK ;; 153.21 1.89E-08 577190000 653400 533110 393271 307803 825710 603560 942670 894340 426963 990950 TRUE FALSE FALSE 607600.0342 490864.422 545556.0634 716580.9395 722141.7524 529098.9037 706803.9955 690718.3053 463972.4966 742809.67 0.817975396 0.66082126 0.734449329 0.964689837 0.972176025 0.712294044 0.951527725 0.929872528 0.624618278 1 19.50263307 -5.222784175 16.82454077 0.876307823 0.73005033 0.225613543 0.119841579 18.00931941 7836.247367 0.031846364 0.055138638 5.99E-06 5.222784175 -0.146257492 DNTIEHLLPLFLAQLK ddPTM_HeLa_A485_30min_R1 1 DNTIEHLLPLFLAQLK 16 0 P30153;B3KQV6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 0 117.37 7.49E-05 3469800 6830 5609.9 4977 6689.1 5111.4 5682.7 7648.4 5990.7 4497.5 9705.4 FALSE FALSE TRUE 8349.309937 6265.929005 6818.19941 7054.508595 4602.491069 5980.237385 6014.256858 4521.471432 5400.106996 7286.022395 1.145935256 0.859993103 0.935791717 0.96822494 0.631687747 0.820782186 0.825451328 0.620567875 0.741159813 1 12.83091571 -1.000000988 0.507328227 0.765828859 12.72544048 0.408603539 0.120339401 104.0471693 1.085652264 0.064052157 1330.69178 0.099999773 1.000000988 11.95961162 DNTIEHLLPLFLAQLK ddPTM_HeLa_A486_30min_R1 1 DNTIEHLLPLFLAQLK 16 0 P30153;B3KQV6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 0 157.03 2.77E-10 6879800 13874 17334 10791 6319.4 11733 17564 19178 13416 15733 19534 FALSE FALSE TRUE 12901.50425 15960.39071 14969.56419 14711.88256 10261.33773 15397.13226 14379.46156 10361.46967 17096.74911 14642.55926 0.881096263 1.090000077 1.022332499 1.004734371 0.700788541 1.051532863 0.982031987 0.707626958 1.167606619 1 13.83788011 -5.578229486 24.99999421 0.921612658 1.008120086 0.040623994 0.14310203 238.1419385 107558.7523 0.040500873 0.052286407 2.64E-06 5.578229486 0.086507428 DNTRPGANS(ph)PEMWSEAIK ddPTM_HeLa_A485_30min_R1 2 DNTRPGANSPEMWSEAIK 18 1 F1T0B3;A0A087X2G1;Q92499-3;Q92499;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 1 0 DNT(0.003)RPGANS(0.997)PEMWSEAIK;DNTRPGANS(1)PEMWSEAIK ; 232.02 1.54E-35 903610000 493290 454770 377470 661670 622360 570540 868510 816330 473290 914950 TRUE FALSE FALSE 603020.6587 507951.3955 517111.8608 697815.3567 560395.6532 600412.5922 682945.7434 616123.7875 568274.9617 686869.8034 0.877925708 0.739516271 0.752852809 1.015935412 0.815868816 0.874128676 0.99428704 0.897002291 0.827340144 1 19.38967714 -5.238301432 24.99732921 0.910623923 0.785040052 0.379623478 0.074327969 848.3442901 916516.9101 0.019792703 0.034255015 5.78E-06 5.238301432 -0.125583872 DNTRPGANS(ph)PEMWSEAIK ddPTM_HeLa_A486_30min_R1 2 DNTRPGANSPEMWSEAIK 18 1 F1T0B3;A0A087X2G1;Q92499-3;Q92499;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 1 0 DNTRPGANS(1)PEMWSEAIK;DNTRPGANS(1)PEMWSEAIK ; 250.75 1.74E-46 1141660000 595040 623870 343650 248880 649960 702570 789070 736300 510280 838330 TRUE FALSE FALSE 553330.7688 574432.2691 476720.4833 579405.2177 568435.9562 615894.0566 591636.3401 568660.5633 554511.4813 628406.7114 0.880529693 0.914109061 0.758617746 0.922022644 0.904566972 0.980088286 0.941486348 0.904924395 0.882408592 1 19.26133906 -5.488748682 24.94569003 0.931523316 0.85454323 0.369916877 0.049414938 694.7602348 507800.5736 0.013864517 0.020551495 3.25E-06 5.488748682 -0.076980086 DPALNT(ph)S(ph)LPQKVLGT(ph)T(ph)EEISGK ddPTM_HeLa_A486_30min_R1 1 DPALNTSLPQKVLGTTEEISGK 22 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;D6RE77 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 4 0 DPALNT(0.999)S(0.999)LPQKVLGT(0.998)T(0.998)EEIS(0.004)GK 42.347 0.021697 17990000000 5862600 7368000 4876400 233150 5364400 3947500 1648000 3181400 5926000 378670 TRUE FALSE FALSE 5451662.014 6784132.846 6764672.675 542784.9827 4691546.931 3460497.585 1235652.969 2457064.669 6439670.451 283848.5673 19.20623404 23.90053581 23.83197752 1.912234358 16.52834459 12.19135125 4.35321193 8.656251793 22.68699297 1 18.11476193 -5.240419404 24.93066681 10 22.47167968 0.455619305 6.348544321 716.4259782 849713.3409 1.678282387 2.903129023 5.75E-06 5.240419404 12.47167968 DPAQPMS(ph)PGEATQSGAR ddPTM_HeLa_A485_30min_R1 1 DPAQPMSPGEATQSGAR 17 0 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(1)PGEATQSGAR 219.99 8.66E-26 0 43582 41013 49240 47260 53350 32383 38976 29686 46629 80493 TRUE FALSE FALSE 53276.66554 45809.11358 67455.92505 49841.69413 48038.28668 34078.52381 30648.4592 22405.46195 55987.01259 60427.57646 0.881661464 0.75808292 1.116310284 0.82481703 0.794972916 0.563956488 0.507193255 0.370782071 0.926514282 1 15.88291946 -5.979944446 2.647026834 0.625466881 0.902861774 0.199572272 0.196880757 0.359824782 5.107632623 0.066495672 0.073325466 1.05E-06 5.979944446 0.277394893 DPAQPMS(ph)PGEATQSGAR ddPTM_HeLa_A486_30min_R1 3 DPAQPMSPGEATQSGAR 17 0 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(1)PGEATQSGAR;DPAQPMS(1)PGEATQSGAR;DPAQPMS(1)PGEATQSGAR ;; 193.72 2.94E-18 405750000 284074 390990 324810 111170 338437 370391 333347 348125 344390 311601 TRUE FALSE FALSE 264161.8796 360006.5284 450585.1307 258809.3782 295987.0757 324695.9243 249940.0548 268864.537 374242.0025 233574.0814 1.130955447 1.541294849 1.929088741 1.108039799 1.267208561 1.390119667 1.070067592 1.15108892 1.60224114 1 17.83352067 -5.3113871 24.999994 1.235199224 1.534533499 0.252382152 0.241696318 505.5036148 253015.1592 0.067917458 0.100738035 4.88E-06 5.3113871 0.299334275 DPAQPMS(ph)PGEATQSGARPADR ddPTM_HeLa_A485_30min_R1 4 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(1)PGEATQSGARPADR;DPAQPMS(0.999)PGEATQSGARPADR;DPAQPMS(1)PGEATQSGARPADR;DPAQPMS(1)PGEATQSGARPADR ;;; 216.82 9.53E-36 5077880000 1531160 1775800 1742160 1480670 2082760 1507930 1788290 1579130 1743700 2229160 TRUE FALSE FALSE 1871761.26 1983464.363 2386657.481 1561555.253 1875393.101 1586882.883 1406207.233 1191845.892 2093644.596 1673471.437 1.118490115 1.185239448 1.426171627 0.933123338 1.120660359 0.948258123 0.840293537 0.712199722 1.251078776 1 20.6744125 -5.28504778 24.54994556 0.959927195 1.237494316 0.388315481 0.15531828 607.5954337 631826.0207 0.044260034 0.065693426 5.19E-06 5.28504778 0.277567121 DPAQPMS(ph)PGEATQSGARPADR ddPTM_HeLa_A486_30min_R1 4 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(1)PGEATQSGARPADR;DPAQPMS(1)PGEATQSGARPADR;DPAQPMS(1)PGEATQSGARPADR;DPAQPMS(1)PGEATQSGARPADR ;;; 184.66 1.62E-19 5820680000 1723790 2070070 1717390 654144 2107050 1796880 2028440 2116710 1723650 2027530 TRUE FALSE FALSE 1602961.223 1906030.114 2382409.401 1522880.291 1842764.142 1575199.215 1520902.857 1634781.34 1873057.37 1519823.291 1.054702367 1.254112978 1.567556844 1.002011418 1.212485789 1.036435765 1.000710324 1.075639089 1.232417861 1 20.53547216 -5.331193055 24.99999791 1.083515433 1.28833752 0.32587543 0.139742231 192.476545 68983.6921 0.039617235 0.058761866 4.66E-06 5.331193055 0.204822087 DPFRDS(ph)PLSSR ddPTM_HeLa_A485_30min_R1 6 DPFRDSPLSSR 11 1 Q9UJY1 Q9UJY1 HSPB8 Heat shock protein beta-8 1 0 DPFRDS(1)PLSSR;DPFRDS(0.999)PLSSR;DPFRDS(1)PLSSR;DPFRDS(1)PLSSR;DPFRDS(0.995)PLS(0.005)SR;DPFRDS(1)PLSSR ;;;;; 174.24 8.76E-09 2007710000 885757 762181 906726 941653 1401140 1046899 1234922 1167015 899647 1215270 TRUE FALSE FALSE 1082790.589 851311.4379 1242161.679 993093.119 1261637.582 1101713.013 971070.8263 880802.7414 1080197.901 912325.5544 1.186846717 0.93312243 1.361533362 1.088529324 1.382880898 1.207587585 1.06439069 0.965447846 1.184004872 1 19.7991892 -6.792594116 6.789430269 1.049497238 1.19313093 0.215723337 0.13073666 0.297419742 43.00764275 0.054060985 0.037071386 1.61E-07 6.792594116 0.143633693 DPFRDS(ph)PLSSR ddPTM_HeLa_A486_30min_R1 6 DPFRDSPLSSR 11 1 Q9UJY1 Q9UJY1 HSPB8 Heat shock protein beta-8 1 0 DPFRDS(0.997)PLS(0.003)SR;DPFRDS(1)PLSSR;DPFRDS(1)PLSSR;DPFRDS(1)PLSSR;DPFRDS(1)PLSSR;DPFRDS(1)PLSSR ;;;;; 176.83 3.42E-09 1929870000 881423 1222460 1108270 398868 1488220 1308908 1391670 1396390 1043238 1348176 TRUE FALSE FALSE 819639.7994 1125587.817 1537421.825 928584.8617 1301553.57 1147428.239 1043459.446 1078462.48 1133666.71 1010583.954 0.811055624 1.113799415 1.52132024 0.918859693 1.28792226 1.1354111 1.032531183 1.067167626 1.121793696 1 19.94675775 -6.689854813 7.031593496 1.061172796 1.146328272 0.035922777 0.182814825 0.838267702 67.61699139 0.070615048 0.054283958 2.04E-07 6.689854813 0.085155475 DPGMS(ph)QSHNDLVFLEQPEGSR ddPTM_HeLa_A485_30min_R1 2 DPGMSQSHNDLVFLEQPEGSR 21 0 H7BZB0;Q9Y426-2;Q9Y426-3;Q9Y426 H7BZB0 C2CD2 C2 domain-containing protein 2 1 0 DPGMS(0.638)QS(0.362)HNDLVFLEQPEGSR;DPGMS(0.543)QS(0.457)HNDLVFLEQPEGSR ; 185.35 2.31E-19 148652000 76767.6 93400.4 67176.2 51934.7 72192 62037.6 72911.8 71599.3 55749.1 102937.8 TRUE FALSE FALSE 93844.28777 104322.7643 92027.47181 54771.76116 65004.311 65285.79281 57333.5983 54039.45941 66937.43301 77277.30089 1.214383612 1.3499794 1.190873268 0.708769076 0.841182472 0.844824962 0.7419203 0.699292791 0.866197865 1 16.23775708 -5.166155623 4.692946998 0.801871735 1.277696341 0.832482344 0.090089226 0.077079629 2.829921824 0.023680045 0.042264913 6.82E-06 5.166155623 0.475824606 DPLEEMVPLSHLEEEQPPAPES(ph)PESR ddPTM_HeLa_A486_30min_R1 1 DPLEEMVPLSHLEEEQPPAPESPESR 26 0 O60307 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 DPLEEMVPLSHLEEEQPPAPES(0.977)PES(0.023)R 135.39 2.58E-06 27033000 14360 14762 12210 4969.6 14538 13326 11239 12853 13216 15750 TRUE FALSE FALSE 13353.43816 13592.20536 16938.039 11569.47995 12714.50848 11681.97361 8426.883326 9926.652479 14361.57352 11806.09748 1.13106284 1.151286899 1.43468568 0.979958023 1.076944223 0.98948646 0.713773822 0.84080726 1.216453916 1 13.52724454 -5.392451724 8.352641564 0.959663224 1.229818094 0.405134317 0.146543305 0.301185338 18.93555984 0.043209044 0.06414839 4.05E-06 5.392451724 0.27015487 DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_A485_30min_R1 6 DPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 35 1 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.994)PT(0.006)MGR;DPLGGLADMFGQMPGSGIGT(0.011)GPGVIQDRFS(0.983)PT(0.006)MGR;DPLGGLADMFGQMPGS(0.01)GIGT(0.098)GPGVIQDRFS(0.879)PT(0.013)MGR;DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.852)PT(0.147)MGR;DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.985)PT(0.015)MGR;DPLGGLADMFGQMPGSGIGT(0.005)GPGVIQDRFS(0.832)PT(0.163)MGR ;;;;; 326.67 6.22E-129 2543570000 343947 378268 400093 349650 478218 352627 416507 389221 387440 484611 TRUE FALSE FALSE 420456.8235 422503.1521 548104.05 368750.4941 430604.9368 371090.0045 327516.8769 293763.9395 465195.6542 363806.3963 1.155715864 1.161340637 1.506581675 1.013589915 1.183610132 1.020020561 0.900250464 0.807473267 1.278690147 1 18.47281138 -5.923462674 1.469808081 0.982917644 1.246087607 0.292938901 0.159622858 0.476479272 2.128322361 0.063119663 0.075302849 1.19E-06 5.923462674 0.263169963 DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_A486_30min_R1 7 DPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 35 1 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 DPLGGLADMFGQMPGS(0.006)GIGT(0.466)GPGVIQDRFS(0.519)PT(0.009)MGR;DPLGGLADMFGQMPGSGIGT(0.01)GPGVIQDRFS(0.953)PT(0.037)MGR;DPLGGLADMFGQMPGS(0.021)GIGT(0.093)GPGVIQDRFS(0.873)PT(0.013)MGR;DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.988)PT(0.012)MGR;DPLGGLADMFGQMPGS(0.001)GIGT(0.124)GPGVIQDRFS(0.612)PT(0.263)MGR;DPLGGLADMFGQMPGSGIGT(0.001)GPGVIQDRFS(0.908)PT(0.092)MGR;DPLGGLADMFGQMPGS(0.048)GIGT(0.048)GPGVIQDRFS(0.81)PT(0.095)MGR ;;;;;; 240.15 1.84E-51 2534593000 373532 366897 330003 139796.8 388814 364481 393750 393545 347731 418225 TRUE FALSE FALSE 347349.3357 337822.7455 457788.9994 325454.0153 340045.3226 319515.04 295229.5853 303943.3945 377872.6031 313498.7378 1.107976824 1.077588854 1.460257871 1.03813501 1.084678442 1.019190834 0.941724957 0.969520313 1.20534011 1 18.25810011 -5.463655095 24.99991805 1.032481466 1.209454506 0.327637567 0.116887027 303.2989514 128030.2165 0.033048834 0.049019209 3.44E-06 5.463655095 0.17697304 DPLKT(ph)PGR ddPTM_HeLa_A486_30min_R1 1 DPLKTPGR 8 1 Q9NRG9;Q9NRG9-2 Q9NRG9 AAAS Aladin 1 0 DPLKT(1)PGR 69.672 0.00803 0 434150 433410 218130 211150 354690 530570 598060 538640 396950 692100 TRUE FALSE FALSE 403718.327 399065.0131 302595.7777 491567.8709 310201.4728 465113.6678 448419.0624 416003.4304 431357.9456 518793.6552 0.778186709 0.76921722 0.583268077 0.947520977 0.597928424 0.896529214 0.86434955 0.801866843 0.831463418 1 18.98480131 -9.327124602 0.182369047 1.150175857 0.686771308 0.322683655 0.105698948 16.37438902 0.902317745 1.81801363 0.443248734 4.71E-10 9.327124602 -0.46340455 DPLTHTS(ph)NSLPR ddPTM_HeLa_A486_30min_R1 1 DPLTHTSNSLPR 12 0 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0 A0A2R8Y7K2 SPAST Spastin 1 0 DPLTHT(0.032)S(0.692)NS(0.276)LPR 119.54 0.00025053 0 128320 184120 204270 35027 235330 142130 161420 181780 184000 114680 TRUE FALSE FALSE 119325.4306 169529.6606 283368.8145 81544.62617 205812.717 124595.4457 121031.0087 140392.6622 199949.2681 85963.38156 1.388096053 1.972114842 3.296389805 0.948597236 2.394190565 1.449401401 1.407936804 1.633168213 2.325981884 1 16.39143462 -5.294551642 24.9996819 1.640105375 2.194193453 0.169596225 0.626997457 1219.564643 920766.0327 0.173646679 0.257579072 5.08E-06 5.294551642 0.554088078 DPMRS(ph)WIGK ddPTM_HeLa_A486_30min_R1 1 DPMRSWIGK 9 1 Q8N8R5 Q8N8R5 C2orf69 UPF0565 protein C2orf69 1 0 DPMRS(1)WIGK 42.821 0.014272 0 107840 76217 74115 35344 90060 61047 72435 78556 68852 94589 TRUE FALSE FALSE 100280.9729 70177.28734 102814.3129 82282.61819 78763.83502 53515.64182 54310.99686 60670.51367 74820.1468 70903.29873 1.414334378 0.989760541 1.450063886 1.160490692 1.110862773 0.754769422 0.765986884 0.855679704 1.055242113 1 16.11356513 -5.997839056 2.875046727 0.871108456 1.249338378 0.574384477 0.14878507 0.189055368 3.180017536 0.049751923 0.054148103 1.00E-06 5.997839056 0.378229922 DPPASHAVPNT(ph)PHRSPPSDVR ddPTM_HeLa_A485_30min_R1 1 DPPASHAVPNTPHRSPPSDVR 21 1 H7C0J3;I3L229 H7C0J3 CHD3 1 0 DPPASHAVPNT(0.583)PHRS(0.382)PPS(0.035)DVR 161.84 2.12E-13 355680000 86390 83581 99933 121010 116650 88332 102570 77438 103230 140140 TRUE FALSE FALSE 105607.1575 93355.07089 136902.3753 127620.4699 105035.9164 92956.92693 80655.08158 58446.20908 123947.3141 105205.6771 1.003816147 0.887357731 1.301283154 1.213056875 0.998386393 0.883573297 0.766641913 0.55554235 1.17814283 1 16.68285303 -6.163407945 3.023989051 0.839247706 1.100114914 0.236665411 0.183611358 0.350053523 6.175910875 0.066331783 0.065670964 6.86E-07 6.163407945 0.260867209 DPPASHAVPNTPHRS(ph)PPSDVR ddPTM_HeLa_A485_30min_R1 1 DPPASHAVPNTPHRSPPSDVR 21 1 H7C0J3;I3L229 H7C0J3 CHD3 1 0 DPPASHAVPNT(0.273)PHRS(0.696)PPS(0.032)DVR 152.35 6.15E-10 322090000 113500 134780 149780 170860 174460 112710 147130 107790 145090 216230 TRUE FALSE FALSE 138747.6834 150541.3486 205189.8549 180193.6492 157090.1498 118611.3213 115694.4736 81354.33349 174208.2322 162327.8404 0.854737444 0.927390817 1.264045985 1.110060041 0.967733874 0.730689948 0.712721079 0.501173017 1.073187641 1 17.30855093 -6.128181241 4.011876592 0.767330914 1.04645795 0.266984858 0.18057303 0.28065425 7.736813805 0.061897367 0.062333579 7.44E-07 6.128181241 0.279127036 DPPASHAVPNTPHRS(ph)PPSDVR ddPTM_HeLa_A486_30min_R1 2 DPPASHAVPNTPHRSPPSDVR 21 1 H7C0J3;I3L229 H7C0J3 CHD3 1 0 DPPASHAVPNT(0.185)PHRS(0.74)PPS(0.074)DVR;DPPASHAVPNT(0.061)PHRS(0.935)PPS(0.004)DVR ; 139.28 1.34E-07 758570000 197070 250670 178232 90800 252570 228320 229550 253240 210642 259030 TRUE FALSE FALSE 183256.4107 230805.9963 247248.2036 211386.9888 220890.3155 200152.1998 172114.1621 195582.7802 228900.6182 194167.202 0.943807238 1.188697133 1.273377795 1.088685353 1.13762939 1.030823938 0.886422425 1.007290511 1.178884054 1 17.56694 -6.296888665 4.935498967 1.011408533 1.13635446 0.2064299 0.10238522 0.305010424 19.15788377 0.037516406 0.033792208 5.05E-07 6.296888665 0.124945928 DPQT(ph)PVLQTK ddPTM_HeLa_A485_30min_R1 2 DPQTPVLQTK 10 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 DPQT(1)PVLQTK;DPQT(1)PVLQTK ; 131.06 0.0003664 505140000 1033890 765720 699380 1434520 1235520 905880 1205080 1074660 878230 1774250 TRUE FALSE FALSE 1263875.264 855264.2931 958109.7656 1512884.195 1112507.291 953310.476 947604.8134 811097.95 1054482.705 1331962.128 0.948882282 0.642108567 0.719322078 1.13583124 0.835239432 0.715718905 0.711435253 0.608949709 0.791676192 1 20.34512163 -6.207180847 6.598845947 0.737812617 0.852949404 0.06502187 0.1553001 0.57520623 56.72887979 0.052735702 0.052472579 6.21E-07 6.207180847 0.115136787 DPQT(ph)PVLQTK ddPTM_HeLa_A486_30min_R1 3 DPQTPVLQTK 10 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 DPQT(1)PVLQTK;DPQT(1)PVLQTK;DPQT(1)PVLQTK ;; 141.58 0.00010488 502810000 1473950 1647330 967830 584580 1508290 1815460 1906260 1778570 1417780 1802260 TRUE FALSE FALSE 1370633.716 1516789.571 1342599.695 1360931.783 1319106.204 1591487.003 1429293.586 1373628.437 1540674.312 1350962.365 1.014560991 1.122747465 0.993809842 1.007379493 0.976419653 1.178039481 1.057981793 1.016777722 1.140427262 1 20.36555605 DPS(ph)PESNKKGESPSLESR ddPTM_HeLa_A485_30min_R1 2 DPSPESNKKGESPSLESR 18 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 DPS(0.998)PES(0.002)NKKGESPSLESR;DPS(0.984)PES(0.016)NKKGESPSLESR ; 90.193 0.00033919 931050000 1044230 642720 436760 1718820 1070010 1074790 1865050 1600160 771010 2431900 TRUE FALSE FALSE 1276515.361 717880.5131 598335.6991 1812714.784 963476.0474 1131064.342 1466566.831 1207718.251 925744.6349 1825672.086 0.699202979 0.393214378 0.327734484 0.992902722 0.527737733 0.61953313 0.803302435 0.66151981 0.507070597 1 20.79999623 -14 0.154767731 2.336868616 0.508425515 0.274179705 0.185117139 183.5993671 1.659808324 76.07330257 0.878298028 1.00E-14 14 -1.828443101 DPSAS(ph)PGDAGEQAIR ddPTM_HeLa_A485_30min_R1 2 DPSASPGDAGEQAIR 15 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 DPSAS(1)PGDAGEQAIR;DPS(0.029)AS(0.971)PGDAGEQAIR ; 260.84 2.04E-50 1988200000 815540 762390 885950 1107230 1001220 699660 909620 750490 872220 1314920 TRUE FALSE FALSE 996954.0594 851544.8786 1213699.772 1167715.171 901535.0213 736293.1157 715272.2561 566431.1508 1047266.554 987134.6433 1.009947393 0.86264309 1.22951796 1.18293404 0.913284755 0.745889247 0.724594422 0.573813466 1.060915611 1 19.91288735 -5.986723462 5.183480977 0.791416698 1.067327669 0.345440179 0.159751639 0.188054182 14.97824602 0.051974728 0.057046087 1.03E-06 5.986723462 0.27591097 DPSAS(ph)PGDAGEQAIR ddPTM_HeLa_A486_30min_R1 2 DPSASPGDAGEQAIR 15 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 DPSAS(1)PGDAGEQAIR;DPSAS(1)PGDAGEQAIR ; 266.72 8.56E-51 4590300000 1951180 2714100 2436500 681360 2778200 2843900 3044600 2786100 2605500 2282400 TRUE FALSE FALSE 1814412.358 2499024.831 3379978.052 1586240.514 2429732.25 2493048.533 2282808.878 2151765.85 2831346.838 1710872.184 1.060518942 1.460673015 1.975587705 0.927153138 1.420171695 1.457179885 1.334295396 1.257701113 1.654914297 1 20.70630055 -10.51221724 2.835130004 0.983617399 1.396392574 0.154246646 0.276908133 36501588.43 39353659.12 4635795.687 0.070481523 3.07E-11 10.51221724 0.412775175 DPSASNGGGS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 DPSASNGGGSPAR 13 0 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DPSASNGGGS(1)PAR;DPSAS(0.001)NGGGS(0.999)PAR;DPSASNGGGS(1)PAR ;; 178.51 5.14E-17 1867598000 343688 385499 353531 390813 476904 331090 406457 380309 338161 503318 TRUE FALSE FALSE 420140.2099 430579.7547 484316.8286 412162.1246 429421.7632 348425.3604 319614.1415 287037.6214 406026.8109 377850.0855 1.111923025 1.139551825 1.2817698 1.090808605 1.136487141 0.922125927 0.84587553 0.759660068 1.074571177 1 18.52745442 -6.257228772 3.538568275 0.89704746 1.159125858 0.606207042 0.092707348 0.152752414 4.155814421 0.032983696 0.030867146 5.53E-07 6.257228772 0.262078398 DPSASNGGGS(ph)PAR ddPTM_HeLa_A486_30min_R1 5 DPSASNGGGSPAR 13 0 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DPSASNGGGS(1)PAR;DPSASNGGGS(1)PAR;DPSASNGGGS(1)PAR;DPS(0.002)AS(0.022)NGGGS(0.977)PAR;DPSAS(0.003)NGGGS(0.997)PAR ;;;; 167.92 5.75E-12 1917252000 500694 608807 503554 162737.9 601569 578241 577754 623034 559162 539701 TRUE FALSE FALSE 465597.9362 560562.9161 698543.5944 378862.0555 526114.6066 506903.5045 433193.8383 481182.7589 607630.6124 404556.3567 1.150885231 1.385623799 1.726690442 0.936487709 1.30047297 1.252986132 1.070787373 1.189408474 1.501967778 1 18.62598117 -5.270063633 24.99785746 1.190416109 1.41752223 0.235905056 0.198957232 963.3046732 2792188.635 0.055493797 0.083781129 5.37E-06 5.270063633 0.227106121 DPSASNGGGS(ph)PARR ddPTM_HeLa_A485_30min_R1 2 DPSASNGGGSPARR 14 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DPSASNGGGS(1)PARR;DPSASNGGGS(1)PARR ; 114.99 0.0001084 153386000 51445 58049 62122 55167 76431 56288 65040 56657 59378 77659 TRUE FALSE FALSE 62888.76277 64837.32559 85103.51291 58180.63352 68821.26127 59235.15264 51143.67267 42761.78192 71294.61995 58300.04051 1.078708732 1.112131742 1.459750494 0.997951854 1.180466783 1.016039648 0.877249351 0.733477739 1.222891431 1 15.83120927 -6.392180176 3.124213933 0.936332671 1.171320571 0.271155689 0.160330207 0.326234792 6.039283231 0.060698345 0.052158338 4.05E-07 6.392180176 0.234987899 DPSASNGGGS(ph)PARR ddPTM_HeLa_A486_30min_R1 1 DPSASNGGGSPARR 14 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DPSASNGGGS(1)PARR 98.227 0.00048327 45237000 21285 21048 19323 8069.1 20281 19409 23680 24962 16343 21491 TRUE FALSE FALSE 19793.03142 19380.07982 26805.38309 18785.27259 17737.16787 17014.51492 17755.01354 19278.69752 17759.6244 16109.51372 1.228654804 1.203020784 1.663947377 1.166098054 1.101036827 1.056178058 1.102144599 1.196727465 1.102430819 1 13.97562532 -5.502684372 24.6402048 1.104442616 1.359994615 0.485956251 0.124921319 565.8752544 690453.8008 0.035456151 0.051816678 3.14E-06 5.502684372 0.255551999 DPSVDITQDLVDESEEERFDDMSS(ph)PGLELPSCELSR ddPTM_HeLa_A485_30min_R1 1 DPSVDITQDLVDESEEERFDDMSSPGLELPSCELSR 36 1 Q6IN85-2;Q6IN85;G3V231;H0YIY8;G3V5Z3;Q6IN85-5 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 0 DPSVDITQDLVDESEEERFDDMS(0.032)S(0.968)PGLELPSCELSR 130.63 1.30E-06 27187000 7558.5 9171.7 13051 10538 14665 11578 10496 10852 10586 11810 TRUE FALSE FALSE 9239.862248 10244.25053 17879.108 11113.66426 13204.90111 12184.20618 8253.443856 8190.529985 12710.5131 8865.984347 1.042169926 1.155455518 2.016595935 1.253517243 1.489389175 1.374264346 0.930911169 0.923815074 1.433626837 1 13.1140651 -6.691029811 7.459351318 1.066461244 1.406783433 0.234990497 0.278731836 0.341945701 30.67566627 0.109448079 0.084271571 2.04E-07 6.691029811 0.340322189 DPSVDITQDLVDESEEERFDDMSS(ph)PGLELPSCELSR ddPTM_HeLa_A486_30min_R1 2 DPSVDITQDLVDESEEERFDDMSSPGLELPSCELSR 36 1 Q6IN85-2;Q6IN85;G3V231;H0YIY8;G3V5Z3;Q6IN85-5 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 0 DPSVDITQDLVDESEEERFDDMS(0.007)S(0.993)PGLELPSCELSR;DPSVDITQDLVDESEEERFDDMS(0.013)S(0.987)PGLELPSCELSR ; 172.03 6.95E-15 58889000 38585 44873 37092 14392.2 47124 39560 45424 46753 37657 45793 TRUE FALSE FALSE 35880.39075 41317.10006 51455.01576 33505.76894 41213.26851 34679.48942 34058.43475 36108.36251 40921.13908 34326.13474 1.045279086 1.203663051 1.499004072 0.97610084 1.200638197 1.010294042 0.992201278 1.051920433 1.192127788 1 15.06701979 -5.316728032 24.99978894 1.063537569 1.24475313 0.316850783 0.126962586 359.1239162 162383.7252 0.035894664 0.053240428 4.82E-06 5.316728032 0.181215561 DPSVEVTQDLIDES(ph)EEER ddPTM_HeLa_A485_30min_R1 1 DPSVEVTQDLIDESEEER 18 0 Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7 Q5MIZ7-3 SMEK2 Serine/threonine-protein phosphatase 4 regulatory subunit 3B 1 0 DPSVEVTQDLIDES(1)EEER 282.72 2.21E-69 81507000 35909 68339 29560 19579 20810 33477 28807 34661 20905 22157 TRUE FALSE FALSE 43896.83317 76330.65158 40495.47409 20648.55119 18738.08333 35229.80395 22652.14912 26160.3354 25100.44175 16633.66767 2.639035121 4.58892489 2.434548706 1.241370911 1.126515433 2.117981714 1.361825279 1.572734043 1.509014262 1 14.02181869 -4.992914787 4.966741838 1.475438773 3.619274934 0.735684539 0.525968339 0.079523081 5.676153228 0.132731799 0.269165385 1.02E-05 4.992914787 2.143836161 DPSVEVTQDLIDES(ph)EEERFEEMPETSHLIDLPTCELNK ddPTM_HeLa_A486_30min_R1 1 DPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELNK 38 1 Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7 Q5MIZ7-3 SMEK2 Serine/threonine-protein phosphatase 4 regulatory subunit 3B 1 0 DPS(0.001)VEVT(0.196)QDLIDES(0.803)EEERFEEMPETSHLIDLPTCELNK 150.94 1.55E-09 61292000 55372 55130 36560 25305 54857 66476 67825 62900 50832 72505 TRUE FALSE FALSE 51490.70874 50761.29802 50717.01111 58911.31884 47976.32354 58274.867 50854.46762 48579.0431 55238.15869 54349.27607 0.947403764 0.933982965 0.933168108 1.083939348 0.882740802 1.072228946 0.93569724 0.893830546 1.016355004 1 15.7299732 DPTSLLGVLQAEADS(ph)TSEGLEDAVHSR ddPTM_HeLa_A485_30min_R1 1 DPTSLLGVLQAEADSTSEGLEDAVHSR 27 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 DPTSLLGVLQAEADS(0.456)T(0.456)S(0.089)EGLEDAVHSR 144.55 4.45E-09 41873000 14812 13307 15092 17627 22290 11316 17764 17708 15305 23018 TRUE FALSE FALSE 18106.8783 14863.13789 20675.15883 18589.91838 20070.72934 11908.48826 13968.57628 13365.08523 18376.57311 17280.03621 1.047849557 0.860133492 1.196476591 1.075803207 1.161498106 0.689147182 0.808364989 0.773440812 1.063456863 1 14.07681862 -6.251010388 24.99852436 0.849064705 1.064316452 0.368963936 0.130651793 753.9563703 1807251.569 0.043613674 0.043155579 5.61E-07 6.251010388 0.215251748 DPTSLLGVLQAEADS(ph)TSEGLEDAVHSR ddPTM_HeLa_A486_30min_R1 1 DPTSLLGVLQAEADSTSEGLEDAVHSR 27 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 DPTSLLGVLQAEADS(0.732)T(0.217)S(0.051)EGLEDAVHSR 96.686 0.001593 51397000 18313 23854 17353 8420.4 23653 22071 25817 21378 21791 20631 TRUE FALSE FALSE 17029.35327 21963.72217 24072.54633 19603.11674 20686.22018 19348.10442 19357.31354 16510.69608 23679.86143 15464.86331 1.101164163 1.420233837 1.556596126 1.267590689 1.337627095 1.251100901 1.251696387 1.067626383 1.531204056 1 13.91670646 -6.261003252 1.596613488 1.217730429 1.358226819 0.105829945 0.169114738 0.880249297 4.460560241 0.072374335 0.065781092 5.48E-07 6.261003252 0.140496391 DQCCSGKGDMS(ph)DEDDENEFFDAPEIITMPENLGHK ddPTM_HeLa_A486_30min_R1 1 DQCCSGKGDMSDEDDENEFFDAPEIITMPENLGHK 35 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 DQCCS(0.148)GKGDMS(0.852)DEDDENEFFDAPEIITMPENLGHK 90.3 5.33E-05 78902000 21927 22267 11047 14801 25779 28789 38436 41968 14534 36547 TRUE FALSE FALSE 20390.03053 20502.48182 15324.69425 34457.476 22545.55744 25237.30589 28818.90627 32412.80256 15793.81882 27395.39332 0.744286833 0.748391585 0.559389459 1.257783584 0.822968927 0.921224441 1.051961763 1.183147918 0.576513673 1 14.7416457 -5.240993586 24.99310979 0.97583769 0.690459525 0.341902994 0.183873271 929.7950731 1136587.858 0.048011603 0.083034301 5.74E-06 5.240993586 -0.285378165 DQDLASCDRDRSS(ph)R ddPTM_HeLa_A486_30min_R1 1 DQDLASCDRDRSSR 14 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 DQDLASCDRDRS(0.118)S(0.882)R 97.284 0.00039732 143520000 87258 118030 161820 35306 174730 125630 122230 144400 173290 87660 TRUE FALSE FALSE 81141.6648 108676.8729 224481.0377 82194.15227 152813.7341 110131.0479 91646.76118 111523.2722 188310.9167 65709.36543 1.234856923 1.653902335 3.416271581 1.250874236 2.325600515 1.676032742 1.394729056 1.697220351 2.865815481 1 16.00381139 DQDMS(ph)SPTTMK ddPTM_HeLa_A485_30min_R1 4 DQDMSSPTTMK 11 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 DQDMS(0.493)S(0.493)PT(0.014)T(0.001)MK;DQDMS(0.497)S(0.497)PT(0.005)T(0.001)MK;DQDMS(0.499)S(0.499)PT(0.002)TMK;DQDMS(0.496)S(0.496)PT(0.007)T(0.001)MK ;;; 195.16 2.18E-11 1756740000 3015040 2149260 1686890 4356920 3208890 2430100 3510070 2653760 2456230 5401680 TRUE FALSE FALSE 3685725.246 2400597.261 2310940.808 4594927.507 2889401.645 2557336.278 2760114.87 2002921.199 2949172.831 4055140.587 0.908901965 0.591988665 0.569879332 1.133111765 0.712528107 0.630640596 0.680645914 0.493921519 0.727267716 1 21.9513205 -5.988576982 24.99860611 0.673064568 0.788697005 0.039149954 0.190635874 648.5210088 1419241.642 0.059221022 0.067097118 1.03E-06 5.988576982 0.115632437 DQDMS(ph)SPTTMK ddPTM_HeLa_A486_30min_R1 2 DQDMSSPTTMK 11 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 DQDMS(0.497)S(0.497)PT(0.005)T(0.001)MK;DQDMS(0.498)S(0.498)PT(0.004)T(0.001)MK ; 149.57 6.86E-07 740090000 1890230 1864660 977380 739580 1609130 2045500 2290600 2173030 1506230 2344900 TRUE FALSE FALSE 1757734.638 1716897.551 1355847.711 1721779.616 1407297.911 1793147.007 1717467.653 1678278.506 1636791.229 1757721.777 1.000007317 0.976774352 0.771366509 0.979551849 0.800637467 1.02015406 0.977098694 0.954803273 0.931200404 1 20.7452753 -6.308866277 24.99942968 0.973854438 0.90626105 0.190064781 0.073147126 755.5175307 398242.4998 0.025579911 0.022559412 4.91E-07 6.308866277 -0.067593388 DQDMSS(ph)PTTMK ddPTM_HeLa_A486_30min_R1 1 DQDMSSPTTMK 11 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 DQDMS(0.014)S(0.943)PT(0.035)T(0.007)MK 175.74 1.17E-08 631770000 1220400 1162700 638080 452210 1049500 1352800 1550600 1369400 950030 1486100 TRUE FALSE FALSE 1134856.262 1070563.418 885161.6644 1052767.733 917861.9238 1185905.29 1162623.479 1057617.514 1032379.365 1113970.887 1.018748582 0.961033569 0.794600357 0.94505857 0.823955037 1.06457476 1.043674923 0.949412167 0.926756145 1 20.0872801 -6.267484465 24.98641796 0.996646313 0.907271158 0.2786092 0.070946957 708.6092905 2928917.712 0.025762939 0.023285327 5.40E-07 6.267484465 -0.089375155 DQDMSSPTT(ph)MKKPEKPLFSSASPQDSSPR ddPTM_HeLa_A485_30min_R1 1 DQDMSSPTTMKKPEKPLFSSASPQDSSPR 29 3 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 DQDMS(0.068)S(0.068)PT(0.385)T(0.472)MKKPEKPLFS(0.005)S(0.001)AS(0.001)PQDSSPR 55.194 0.01042 260620000 121830 116120 58759 104940 153740 175400 256760 345560 92647 157060 TRUE FALSE FALSE 148930.6632 129699.2239 80496.39927 110672.6065 138433.1058 184583.6728 201901.1285 260810.8682 111240.4031 117907.8325 1.263110856 1.100005158 0.682706124 0.938636596 1.174078964 1.565491188 1.712364007 2.211989337 0.943452193 1 16.84730003 -6.133764103 3.060239473 1.579301639 0.985204213 0.270034683 0.366644617 0.296216875 5.286662217 0.127306676 0.128004298 7.35E-07 6.133764103 -0.594097425 DQDS(ph)S(ph)DDERALEDWVSSETSALPRPR ddPTM_HeLa_A486_30min_R1 1 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 2 0 DQDS(1)S(1)DDERALEDWVSSETSALPRPR 51.566 0.024742 14793000 29400 29316 24049 23476 37432 34387 39825 35948 23731 46544 TRUE FALSE FALSE 27339.21182 26992.89339 33361.41685 54653.31441 32736.92952 30144.68156 29860.36377 27763.42514 25788.02219 34889.07945 0.783603702 0.773677432 0.956213732 1.566487717 0.938314511 0.864014816 0.855865625 0.795762616 0.739143096 1 15.09048791 -6.154020069 4.675199138 0.839041774 1.024211438 0.114465525 0.214765911 0.519728691 18.17753522 0.078706578 0.078774216 7.01E-07 6.154020069 0.185169664 DQDS(ph)SDDERALEDWVSSETSALPRPR ddPTM_HeLa_A485_30min_R1 2 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 DQDS(0.5)S(0.5)DDERALEDWVSSETSALPRPR;DQDS(0.5)S(0.5)DDERALEDWVSSETSALPRPR ; 137.21 1.10E-06 137393000 50110 51050 57230 59381 93134 66963 87615 96578 58326 85826 TRUE FALSE FALSE 61256.79662 57019.85342 78401.75854 62624.83367 83861.25195 70469.07914 68895.3395 72892.09407 70031.4932 64431.15771 0.950732515 0.884973287 1.21682989 0.971965054 1.301563637 1.093711205 1.069286071 1.131317466 1.086919678 1 15.9754709 -4.748386644 24.99878885 1.11366509 0.917852806 0.408045749 0.091926198 204.2601358 391195.2546 0.021917515 0.057228502 1.78E-05 4.748386644 -0.195812284 DQDS(ph)SDDERALEDWVSSETSALPRPR ddPTM_HeLa_A486_30min_R1 2 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 DQDS(0.562)S(0.438)DDERALEDWVSSETSALPRPR;DQDS(0.605)S(0.395)DDERALEDWVSSETSALPRPR ; 200.14 1.40E-28 114275000 123058 143324 124115 67333 183028 149385 202552 199029 118623 174067 TRUE FALSE FALSE 114432.2697 131966.4843 172175.6519 156754.6268 160070.9216 130955.3975 151871.3472 153714.4415 128905.3372 130479.4902 0.877013464 1.011396382 1.319561041 1.201373691 1.226789906 1.003647373 1.163948043 1.17807359 0.987935628 1 16.99346352 -9.754398326 14.17379984 0.999999999 1.118059041 0.054530901 0.128287318 0 0 0.128664945 0.031205833 1.76E-10 9.754398326 0.118059041 DQDSS(ph)DDERALEDWVSSETSALPRPR ddPTM_HeLa_A486_30min_R1 1 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 DQDS(0.181)S(0.408)DDERALEDWVS(0.111)S(0.111)ET(0.09)S(0.1)ALPRPR 46.371 0.037152 75171000 23618 22841 18500 13280 31902 27946 35136 36785 22955 30818 TRUE FALSE FALSE 21962.50016 21030.99597 25663.69545 30916.51113 27900.55369 24498.30665 26344.60117 28409.85851 24944.75788 23100.97221 0.95071757 0.91039441 1.110935731 1.33832078 1.207765346 1.060488123 1.140410929 1.229812246 1.079814203 1 14.49566595 -4.839264291 4.814732069 1.162858069 0.930410468 0.470525677 0.091213764 0.155238541 6.442125087 0.024248713 0.054337318 1.45E-05 4.839264291 -0.232447601 DQELYFFHELS(ph)PGSCFFLPK ddPTM_HeLa_A485_30min_R1 1 DQELYFFHELSPGSCFFLPK 20 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 1 0 DQELYFFHELS(0.999)PGS(0.001)CFFLPK 93.966 0.00033284 31819000 15564 14176 14840 14731 24082 15466 20432 20890 15566 22257 TRUE FALSE FALSE 19026.1581 15833.75989 20329.93354 15535.71723 21684.31152 16275.77585 16066.53629 15766.69475 18689.95342 16708.73951 1.138694998 0.947633415 1.216724549 0.929795884 1.297782607 0.974087593 0.961564831 0.943619639 1.118573511 1 14.02831528 DQELYFFHELS(ph)PGSCFFLPK ddPTM_HeLa_A486_30min_R1 2 DQELYFFHELSPGSCFFLPK 20 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 1 0 DQELYFFHELS(0.917)PGS(0.083)CFFLPK;DQELYFFHELS(0.965)PGS(0.035)CFFLPK ; 90.633 0.00042976 78025000 52100 53049 39516 27091 64411 58890 65207 65250 48481 61291 TRUE FALSE FALSE 48448.05904 48845.20404 54817.65348 63069.2171 56331.97177 51624.75055 48891.51891 50393.9994 52683.37212 45943.33466 1.054517688 1.063161923 1.193157917 1.37276098 1.226118482 1.123661374 1.06417001 1.096872915 1.14670327 1 15.48756795 -6.480694434 5.156647047 1.085722789 1.186155568 0.230814217 0.089786243 0.363714565 23.50976157 0.037044704 0.031483569 3.31E-07 6.480694434 0.100432779 DQEPDVHYDFEPHVSANAWS(ph)PVMR ddPTM_HeLa_A485_30min_R1 4 DQEPDVHYDFEPHVSANAWSPVMR 24 0 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 DQEPDVHYDFEPHVSANAWS(1)PVMR;DQEPDVHYDFEPHVS(0.02)ANAWS(0.98)PVMR;DQEPDVHYDFEPHVSANAWS(1)PVMR;DQEPDVHYDFEPHVSANAWS(1)PVMR ;;; 219.82 3.46E-38 1179610000 798717 1582362 1674148 303278 2089230 999426 1325600 1486304 1295170 852948 TRUE FALSE FALSE 976388.8411 1767405.471 2293485.012 319845.3092 1881218.925 1051754.4 1042374.731 1121785.614 1555098.739 640323.7609 1.524836185 2.760174741 3.581758404 0.499505607 2.937918347 1.64253533 1.627887007 1.751903774 2.428613201 1 19.28844202 -5.247336821 24.97847002 1.776055524 2.636048083 0.220309403 0.786926436 1283.778476 2273826.925 0.206202126 0.354958229 5.66E-06 5.247336821 0.859992559 DQEPDVHYDFEPHVSANAWS(ph)PVMR ddPTM_HeLa_A486_30min_R1 5 DQEPDVHYDFEPHVSANAWSPVMR 24 0 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 DQEPDVHYDFEPHVS(0.02)ANAWS(0.98)PVMR;DQEPDVHYDFEPHVS(0.093)ANAWS(0.907)PVMR;DQEPDVHYDFEPHVSANAWS(1)PVMR;DQEPDVHYDFEPHVSANAWS(1)PVMR;DQEPDVHYDFEPHVSANAWS(1)PVMR ;;;; 208.7 5.21E-29 1015089000 1333935 1505629 1483213 113102.6 1924678 967622 1189660 1185574 1418431 416810 TRUE FALSE FALSE 1240433.045 1386317.475 2057552.795 263308.5687 1683266.938 848246.6357 891994.4851 915644.6811 1541381.741 312438.063 3.970172625 4.437095344 6.585474175 0.842754452 5.387522001 2.714927328 2.854948198 2.930643828 4.933399363 1 18.2532107 -5.248832827 24.99791845 3.120026035 4.941531926 0.278019924 1.492686167 1102.678513 2186531.372 0.385526907 0.662193891 5.64E-06 5.248832827 1.821505892 DQGELER ddPTM_HeLa_A485_30min_R1 2 DQGELER 7 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 142.64 0.0036329 34182000 34073 40862 39701 40220 50945 42163 50615 52904 37827 52410 FALSE FALSE TRUE 41652.4213 45640.45545 54388.052 42417.11676 45872.73692 44370.58948 39800.69176 39929.21105 45418.53193 39345.15153 1.058641781 1.160002025 1.382331745 1.078077351 1.165905712 1.127726994 1.011578052 1.014844511 1.154361596 1 15.26389824 -6.555972871 3.567284087 1.046782738 1.174222189 0.290575217 0.090826893 0.313040645 8.44326568 0.03707317 0.028978262 2.78E-07 6.555972871 0.127439451 DQGFRGDGGSTTGLSAT(ph)PPASLPGSLTNVK ddPTM_HeLa_A485_30min_R1 2 DQGFRGDGGSTTGLSATPPASLPGSLTNVK 30 1 H7C560;P15056;A0A2R8YDP5;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 DQGFRGDGGS(0.009)T(0.009)T(0.009)GLS(0.04)AT(0.93)PPAS(0.002)LPGSLTNVK;DQGFRGDGGSTTGLS(0.011)AT(0.989)PPASLPGSLTNVK ; 151.24 1.57E-09 308050000 162559 191708 139919 161023 245095 231151 300410 351010 165914 220364 TRUE FALSE FALSE 198719.6887 214126.583 191680.8606 169819.2788 220692.4812 243253.7089 236224.9494 264924.2471 199211.4179 165431.3103 1.201221754 1.294353424 1.158673411 1.026524413 1.334042998 1.470421219 1.427933738 1.601415395 1.204194161 1 17.33587279 -5.962423933 12.71369067 1.385873928 1.178421761 0.175660504 0.165742143 1.495208176 503.2322222 0.04964892 0.056275728 1.09E-06 5.962423933 -0.207452167 DQGFRGDGGSTTGLSAT(ph)PPASLPGSLTNVK ddPTM_HeLa_A486_30min_R1 2 DQGFRGDGGSTTGLSATPPASLPGSLTNVK 30 1 H7C560;P15056;A0A2R8YDP5;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 DQGFRGDGGSTTGLS(0.002)AT(0.997)PPASLPGSLTNVK;DQGFRGDGGS(0.012)T(0.012)T(0.012)GLS(0.039)AT(0.924)PPAS(0.001)LPGSLTNVK ; 169.94 2.46E-14 240050000 394660 351170 220676 140352 412180 334160 430540 423070 258620 480720 TRUE FALSE FALSE 366996.372 323342.0103 306127.6571 326746.549 360480.541 292934.7367 322814.3382 326746.1966 281037.3898 360344.583 1.018459523 0.897313365 0.849541443 0.906761373 1.0003773 0.812929486 0.895849011 0.906760395 0.779912903 1 18.45901763 -6.27022162 24.99095422 0.874310305 0.92616529 0.123683869 0.071483641 1528.496304 4349511.614 0.024566529 0.021986886 5.37E-07 6.27022162 0.051854984 DQGSTYS(ph)GDLESEAVSTPHSWEEELNHYALK ddPTM_HeLa_A486_30min_R1 2 DQGSTYSGDLESEAVSTPHSWEEELNHYALK 31 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 DQGS(0.003)T(0.028)YS(0.968)GDLESEAVSTPHSWEEELNHYALK;DQGS(0.004)T(0.023)YS(0.973)GDLESEAVSTPHSWEEELNHYALK ; 267.87 2.86E-64 170318000 81109 91620 59075 25998 87163 90851 100328 102842 75660 95013 TRUE FALSE FALSE 75423.67795 84359.69753 81950.42208 60524.65787 76230.20378 79642.72733 75224.87324 79427.12163 82218.26972 71221.12637 1.059007092 1.184475756 1.150647656 0.849813264 1.070331342 1.118245827 1.05621572 1.115218555 1.154408445 1 16.12001763 -7.261955683 24.03732527 1.101110121 1.07075861 0.005445398 0.091650708 162.7487495 7576016.593 0.049098176 0.025655309 5.47E-08 7.261955683 -0.030351511 DQHHLGS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 DQHHLGSPSR 10 0 Q9H8M2-2;Q9H8M2-3;Q9H8M2-1;Q9H8M2-6;Q9H8M2 Q9H8M2-2 BRD9 Bromodomain-containing protein 9 1 0 DQHHLGS(0.984)PS(0.016)R;DQHHLGS(0.97)PS(0.03)R;DQHHLGS(0.982)PS(0.018)R;DQHHLGS(0.993)PS(0.007)R ;;; 115.8 0.00034399 7097840000 2376510 3249110 3260860 2241970 3761360 3111710 3255140 3523700 3138410 2964740 TRUE FALSE FALSE 2905156.451 3629065.151 4467187.81 2364443.144 3386865.791 3274634.324 2559652.747 2659507.05 3768260.1 2225684.88 1.305286511 1.630538619 2.007107048 1.062344075 1.521718471 1.471292883 1.15005173 1.194916259 1.693078896 1 21.08581791 -5.273083744 24.98371687 1.317424443 1.645933541 0.276319878 0.257312612 990.9830637 2126214.662 0.071611764 0.107213213 5.33E-06 5.273083744 0.328509098 DQHHLGS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 DQHHLGSPSR 10 0 Q9H8M2-2;Q9H8M2-3;Q9H8M2-1;Q9H8M2-6;Q9H8M2 Q9H8M2-2 BRD9 Bromodomain-containing protein 9 1 0 DQHHLGS(0.972)PS(0.028)R;DQHHLGS(0.975)PS(0.025)R;DQHHLGS(0.98)PS(0.02)R;DQHHLGS(0.987)PS(0.013)R ;;; 116.19 0.00033056 5491490000 3574240 3701650 3382860 556179 4316280 3220740 3566310 3543350 3240280 3117870 TRUE FALSE FALSE 3323704.233 3408317.773 4692793.988 1294812.82 3774891.915 2823397.845 2673981.517 2736606.556 3521150.079 2337135.058 1.422127584 1.458331542 2.007925889 0.554017114 1.615179192 1.208059344 1.144127939 1.170923583 1.506609585 1 21.15630968 -5.237531622 24.99997444 1.197293218 1.612348551 0.315784397 0.307092654 1023.064731 1069801.802 0.079746076 0.13803485 5.79E-06 5.237531622 0.415055333 DQHLNNS(ph)SS(ph)SPQR ddPTM_HeLa_A486_30min_R1 1 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 2 0 DQHLNNS(0.997)S(0.016)S(0.665)S(0.323)PQR 126.14 2.75E-05 596990000 230870 231320 208250 134450 252810 271080 294930 301370 237860 363460 TRUE FALSE FALSE 214687.2052 212989.3607 288889.9771 313006.3947 221100.2124 237636.9057 221135.3945 232754.6299 258477.8963 272447.2503 0.787995493 0.781763664 1.060351965 1.148869715 0.811534021 0.872230883 0.811663154 0.854310806 0.94872639 1 18.0556174 DQHLNNS(ph)SSS(ph)PQR ddPTM_HeLa_A485_30min_R1 2 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 2 0 DQHLNNS(0.999)S(0.001)S(0.002)S(0.998)PQR;DQHLNNS(1)SS(0.078)S(0.922)PQR ; 219.85 5.19E-27 976960000 631900 832440 788570 615610 961900 791670 862850 1015710 786960 841130 TRUE FALSE FALSE 772463.975 929786.6167 1080294.858 649239.2155 866129.8586 833120.617 678495.0487 766605.5299 944895.6536 631451.7709 1.22331429 1.472458642 1.710811353 1.028169126 1.371648475 1.319373316 1.074500191 1.214036551 1.496386101 1 19.26831302 -5.267415075 24.99152194 1.228829167 1.469221148 0.285455959 0.183219093 641.1752487 2681519.534 0.050825766 0.077689645 5.40E-06 5.267415075 0.240391981 DQHLNNS(ph)SSS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 2 0 DQHLNNS(0.972)S(0.312)S(0.327)S(0.39)PQR 101.53 0.00064846 694000000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 DQHLNNSS(ph)SSPQR ddPTM_HeLa_A486_30min_R1 1 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 1 0 DQHLNNS(0.032)S(0.323)S(0.323)S(0.323)PQR 81.346 0.0033291 41299000 31773 25051 25396 5629.6 32047 24804 32758 33710 30017 34817 TRUE FALSE FALSE 29545.87678 23065.86753 35230.01133 13105.9933 28027.36643 21743.93467 24561.60192 26034.96888 32618.89773 26098.59658 1.132086803 0.883797236 1.349881448 0.50217234 1.073903202 0.833145744 0.941108149 0.997562026 1.249833401 1 14.67168461 -7.568142113 10.41765288 1.125050779 0.954625558 0.084819662 0.213968984 1.187349246 263.555822 0.136606027 0.051557832 2.70E-08 7.568142113 -0.170425221 DQHLNNSSSS(ph)PQR ddPTM_HeLa_A485_30min_R1 5 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 1 0 DQHLNNSS(0.001)S(0.002)S(0.997)PQR;DQHLNNS(0.006)S(0.004)S(0.04)S(0.95)PQR;DQHLNNSSS(0.143)S(0.856)PQR;DQHLNNSS(0.185)S(0.185)S(0.63)PQR;DQHLNNS(0.014)S(0.014)S(0.162)S(0.809)PQR ;;;; 274.38 1.61E-48 2204756000 560491 804870 784930 523188 942961 732378 859012 1005544 737345 733850 TRUE FALSE FALSE 685170.2893 898992.5451 1075308.271 551768.4357 849076.4919 770724.1796 675477.0687 758932.7574 885323.3782 550914.7005 1.243695782 1.631818037 1.951859825 1.001549668 1.541212262 1.398990041 1.226101006 1.377586687 1.60700627 1 19.07146943 -5.26251837 24.99982827 1.333384503 1.611393877 0.234413678 0.246703204 151.8701224 3518812.23 0.067246871 0.106434587 5.46E-06 5.26251837 0.278009374 DQHLNNSSSS(ph)PQR ddPTM_HeLa_A486_30min_R1 5 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 1 0 DQHLNNS(0.002)S(0.009)S(0.128)S(0.861)PQR;DQHLNNS(0.001)S(0.028)S(0.057)S(0.914)PQR;DQHLNNSS(0.013)S(0.107)S(0.88)PQR;DQHLNNSS(0.017)S(0.065)S(0.917)PQR;DQHLNNSS(0.009)S(0.03)S(0.961)PQR ;;;; 240.31 6.12E-35 4864910000 1219130 1267120 1103300 182316 1435850 1066170 1154530 1213090 1070660 1020460 TRUE FALSE FALSE 1133675.283 1166708.796 1530527.307 424440.8617 1255752.304 934636.7854 865654.3826 936895.8886 1163465.671 764930.1739 1.482063751 1.525248756 2.000871922 0.554875303 1.641656124 1.221858958 1.131677651 1.224812304 1.521008989 1 19.54496853 -5.230913177 24.99998773 1.212819447 1.6549801 0.34338798 0.304999315 833.0485565 682239.3462 0.079211607 0.137176546 5.88E-06 5.230913177 0.442160654 DQKEEGNDYDT(ph)R ddPTM_HeLa_A486_30min_R1 2 DQKEEGNDYDTR 12 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 DQKEEGNDY(0.001)DT(0.999)R;DQKEEGNDYDT(1)R ; 92.211 0.0022963 1506530000 2548800 2219870 1513800 623930 1520180 1718930 1924000 1808730 1647090 3213800 TRUE FALSE FALSE 2370142.282 2043959.417 2099983.901 1452540.572 1329504.849 1506865.893 1442594.85 1396921.663 1789861.087 2409043.562 0.983851982 0.848452659 0.871708563 0.60295322 0.551880784 0.625503796 0.598824726 0.579865672 0.742975808 1 21.20002905 -5.204335612 5.349542316 0.644277313 0.900637614 0.39312832 0.127776246 0.186996773 11.56133086 0.03293241 0.057540353 6.25E-06 5.204335612 0.2563603 DQLIY(ph)NLLK ddPTM_HeLa_A486_30min_R1 1 DQLIYNLLK 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;P00338-4;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5GWW2;F5H8H6;F5GXU1;F5GXC7 P00338 LDHA L-lactate dehydrogenase A chain 1 0 DQLIY(1)NLLK 73.985 0.010313 17684000 27973 23230 17177 9512 28122 14834 28788 28054 20237 33206 TRUE FALSE FALSE 26012.23715 21389.1702 23828.39442 22144.41671 24594.67653 13003.9319 21584.93791 21666.71661 21991.15945 24891.00147 1.045045825 0.859313364 0.95730959 0.889655514 0.988095098 0.522435062 0.867178363 0.870463836 0.883498379 1 14.60333666 -1.000008539 0.611467124 0.844311176 13.38161291 0.133530762 0.127377343 360.359965 2.683293374 0.057050533 6055.586697 0.099998034 1.000008539 12.53730173 DQLIYNLLK ddPTM_HeLa_A485_30min_R1 4 DQLIYNLLK 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;P00338-4;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5GWW2;F5H8H6;F5GXU1;F5GXC7 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ;;; ;;; 156.92 4.82E-05 138602000 275075 271093 240791 304690 334251 274653 353734 302123 255068 380539 FALSE FALSE TRUE 336264.4848 302794.9682 329869.611 321334.4432 300971.7968 289033.4064 278155.8412 228026.8605 306257.808 285677.6306 1.177076707 1.059918369 1.154691777 1.124814857 1.05353645 1.011746722 0.973670359 0.798196415 1.072039863 1 18.12402855 -6.242805859 1.524580673 0.945407365 1.126794547 0.527154266 0.070778326 0.291098953 1.351103578 0.030213656 0.027795343 5.72E-07 6.242805859 0.181387182 DQLIYNLLK ddPTM_HeLa_A486_30min_R1 3 DQLIYNLLK 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;P00338-4;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5GWW2;F5H8H6;F5GXU1;F5GXC7 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ;; ;; 156.92 0.00097066 158778000 471493 539924 363595 213805.2 736908 517969 537974 522262 438344 512721 FALSE FALSE TRUE 438443.7755 497138.4559 504388.7214 497749.3107 644478.1272 454067.2511 403367.2151 403354.3435 476340.0109 384332.3243 1.140793391 1.293511954 1.312376528 1.295101346 1.67687724 1.181444345 1.049527166 1.049493675 1.23939617 1 18.55199479 -6.512125792 24.81241723 1.092551111 1.34576464 0.440272061 0.138526109 471.6988137 1088448.873 0.05182993 0.042910314 3.08E-07 6.512125792 0.253213528 DQMEGS(ph)PNSSESFEHIAR ddPTM_HeLa_A485_30min_R1 2 DQMEGSPNSSESFEHIAR 18 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 DQMEGS(1)PNSSESFEHIAR;DQMEGS(1)PNSSESFEHIAR ; 231.29 3.19E-35 1745790000 408290 496460 457680 400110 653280 453030 549770 580560 414020 558530 TRUE FALSE FALSE 499112.7019 554516.6784 626994.8777 421966.9962 588237.1494 476749.9503 432307.1483 438176.7497 497110.0164 419298.75 1.190351037 1.322485885 1.495341633 1.006363592 1.402906995 1.137017342 1.031024176 1.04502279 1.185574764 1 18.677619 -6.471127801 6.467736033 1.070805701 1.281729698 0.392617451 0.129087852 0.239648669 23.48357501 0.045252258 0.039256287 3.38E-07 6.471127801 0.210923997 DQMEGS(ph)PNSSESFEHIAR ddPTM_HeLa_A486_30min_R1 2 DQMEGSPNSSESFEHIAR 18 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 DQMEGS(1)PNSSESFEHIAR;DQMEGS(1)PNSSESFEHIAR ; 203.79 2.00E-25 1306260000 449630 490930 383870 104891 558920 424030 475830 496430 400290 380840 TRUE FALSE FALSE 418113.2589 452026.9189 532514.7444 244191.5489 488815.0419 371717.4898 356772.3012 383403.726 434987.4595 285475.1851 1.464622078 1.583419304 1.865362638 0.855386253 1.712285576 1.30210088 1.249748909 1.343036964 1.523731246 1 18.12300582 -12.32140093 0.079323946 8.27E-10 1.882900115 0.214248172 0.259681368 278.1259259 2.204726392 59.65238594 10.37331047 4.77E-13 12.32140093 1.882900115 DQNES(ph)LDEEMFYK ddPTM_HeLa_A486_30min_R1 3 DQNESLDEEMFYK 13 0 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 DQNES(1)LDEEMFYK;DQNES(1)LDEEMFYK;DQNES(1)LDEEMFYK ;; 224.86 1.61E-27 530519000 630307 748053 408375 352128 653830 872370 1004810 947480 645011 886040 TRUE FALSE FALSE 586125.7342 688774.5559 566508.7367 819771.7796 571820.5447 764745.859 753395.9102 731759.4873 700921.0728 664169.8168 0.882493783 1.037045856 0.852957666 1.234280388 0.860955331 1.151431215 1.134342289 1.101765646 1.055334125 1 19.34119264 -5.241327214 24.99092401 1.077617576 0.935453785 0.311895518 0.103531361 1041.56121 1294218.981 0.02671326 0.046196304 5.74E-06 5.241327214 -0.142163791 DQPAFTPSGILT(ph)PHALGSR ddPTM_HeLa_A485_30min_R1 4 DQPAFTPSGILTPHALGSR 19 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 DQPAFTPSGILT(1)PHALGSR;DQPAFTPSGILT(0.999)PHALGS(0.001)R;DQPAFTPSGILT(1)PHALGSR;DQPAFTPSGILT(1)PHALGSR ;;; 161.49 3.30E-12 780920000 658281 654730.4 701554 769109 1124671 712749 945758 897789 737453 1107934 TRUE FALSE FALSE 804713.3374 731295.4249 961088.0187 811123.4772 1012694.806 750067.4355 743689.0772 677604.8401 885453.0528 831746.4438 0.967498381 0.879228797 1.155506015 0.975205224 1.217552313 0.901798188 0.894129554 0.814677171 1.064570891 1 19.66578427 DQPAFTPSGILT(ph)PHALGSR ddPTM_HeLa_A486_30min_R1 3 DQPAFTPSGILTPHALGSR 19 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 DQPAFTPSGILT(1)PHALGSR;DQPAFTPSGILT(1)PHALGSR;DQPAFTPSGILT(1)PHALGSR ;; 145.6 2.80E-08 621965000 787780 881890 692193 314858 1082070 878510 1010740 1075090 770784 945930 TRUE FALSE FALSE 732560.6901 812005.8246 960228.6672 733005.336 946346.6907 770128.3682 757842.1615 830315.476 837596.1777 709062.971 1.033139115 1.145181539 1.354221989 1.033766204 1.334644072 1.086121261 1.068793876 1.17100386 1.181271921 1 19.43555423 DQPAFTPSGILTPHALGS(ph)RNSPGSQVASNPR ddPTM_HeLa_A485_30min_R1 1 DQPAFTPSGILTPHALGSRNSPGSQVASNPR 31 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 DQPAFTPSGILTPHALGS(0.573)RNS(0.426)PGS(0.001)QVASNPR 141.25 2.22E-08 143870000 15215 41033 29828 10407 71670 61337 78138 161680 25073 17945 TRUE FALSE FALSE 18599.52426 45831.45241 40862.61845 10975.50806 64534.28315 64548.51047 61443.17797 122027.7265 30104.92112 13471.64175 1.380642731 3.402068824 3.033232266 0.81471199 4.790379995 4.791436089 4.56092725 9.058118434 2.234688367 1 13.71763806 -5.787601601 23.50489765 4.835859307 2.309091547 0.198260862 2.102407601 156.3232766 140444.0508 0.628333724 0.712776763 1.63E-06 5.787601601 -2.52676776 DQPDGS(ph)SLSPAQSPSQSQPPAASSLREPGLESK ddPTM_HeLa_A486_30min_R1 1 DQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 33 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DQPDGS(0.351)S(0.303)LS(0.343)PAQS(0.001)PS(0.001)QSQPPAASSLREPGLESK 59.993 0.0060077 97577000 31234 35538 19846 12161 28031 36926 45663 41161 26754 42806 TRUE FALSE FALSE 29044.65789 32721.83945 27530.90269 28311.42258 24515.0906 32370.44556 34237.63443 31789.53884 29073.05826 32087.09898 0.905181796 1.019781797 0.858005353 0.882330391 0.764017047 1.008830545 1.06702181 0.990726487 0.906066899 1 14.96970574 DQPDGSSLS(ph)PAQSPSQSQPPAASSLREPGLESK ddPTM_HeLa_A485_30min_R1 3 DQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 33 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DQPDGS(0.027)S(0.022)LS(0.937)PAQS(0.005)PS(0.005)QS(0.003)QPPAASSLREPGLESK;DQPDGSS(0.002)LS(0.989)PAQS(0.009)PSQSQPPAASSLREPGLESK;DQPDGS(0.012)S(0.009)LS(0.979)PAQSPSQSQPPAASSLREPGLESK ;; 169.52 8.58E-15 691320000 159851 141689 122332 208758 200752 189078 248881 246005 141845 277505 TRUE FALSE FALSE 195409.3035 158258.296 167587.6975 220161.9209 180764.426 198977.8317 195705.5412 185671.888 170311.9904 208328.1106 0.937988171 0.759658865 0.804441114 1.056803714 0.867690997 0.955117536 0.939410148 0.891247405 0.817518048 1 17.668498 DQPDGSSLS(ph)PAQSPSQSQPPAASSLREPGLESK ddPTM_HeLa_A486_30min_R1 2 DQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 33 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DQPDGS(0.014)S(0.012)LS(0.973)PAQS(0.001)PSQSQPPAASSLREPGLESK;DQPDGS(0.002)S(0.011)LS(0.987)PAQSPSQSQPPAASSLREPGLESK ; 203.21 1.74E-29 542780000 129546 153088 85875 54562 144505 167312 188897 182393 125507 199323 TRUE FALSE FALSE 120465.4944 140956.7493 119128.0998 127023.0934 126379.8354 146670.7465 141632.9727 140866.0955 136386.0478 149411.2234 0.806268041 0.943414732 0.797316942 0.850157642 0.845852357 0.981658159 0.947940653 0.942807992 0.912823312 1 17.188929 -6.253228555 24.87103074 0.952902437 0.851106576 0.616302591 0.042697832 405.9211113 1229557.458 0.013740451 0.01351094 5.58E-07 6.253228555 -0.101795862 DQPPFGDS(ph)DDS(ph)VEADKSSPGIHLER ddPTM_HeLa_A486_30min_R1 1 DQPPFGDSDDSVEADKSSPGIHLER 25 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 DQPPFGDS(1)DDS(1)VEADKSSPGIHLER 128.38 1.60E-05 142520000 64151 60809 44335 16013 62710 64103 76396 66693 61714 75734 TRUE FALSE FALSE 59654.34618 55990.27338 61502.69933 37279.07325 54844.32705 56194.62361 57280.91277 51508.4598 67063.41921 56769.71345 1.050812881 0.986270142 1.083371671 0.656671859 0.966084268 0.989869777 1.009004789 0.907322878 1.181323898 1 15.79283384 -7.749968729 24.99561056 1.090661983 0.954649907 0.17262201 0.117733628 335.0219729 730054.6311 0.081500212 0.030214543 1.78E-08 7.749968729 -0.136012077 DQQEAALVDMVNDGVEDLR ddPTM_HeLa_A485_30min_R1 1 DQQEAALVDMVNDGVEDLR 19 0 P09211;A8MX94 P09211 GSTP1 Glutathione S-transferase P 0 0 110.77 0.0023451 21669000 23172 22789 23500 20969 30605 32333 35572 43240 21809 34336 FALSE FALSE TRUE 28326.53146 25453.97531 32193.62792 22114.48337 27557.85874 34025.90588 27971.7516 32635.3222 26185.86626 25776.66711 1.098921414 0.987481244 1.248944551 0.857926406 1.069100929 1.320027362 1.085157809 1.266079981 1.015874789 1 14.65377812 -6.023332095 24.95579697 1.155654775 1.046454615 0.089166344 0.13066156 1482.839706 1586029.182 0.040763546 0.041022234 9.48E-07 6.023332095 -0.10920016 DQQEAALVDMVNDGVEDLR ddPTM_HeLa_A486_30min_R1 1 DQQEAALVDMVNDGVEDLR 19 0 P09211;A8MX94 P09211 GSTP1 Glutathione S-transferase P 0 0 169.25 1.89E-15 0 22794 27798 29314 12077 64571 30297 36914 32157 32439 31486 FALSE FALSE TRUE 21196.25831 25595.18524 40665.16586 28115.86634 56471.90308 26559.26418 27677.72676 24835.55308 35250.83864 23601.70066 0.898081821 1.084463599 1.722976087 1.191264424 2.392704826 1.125311458 1.172700525 1.052278115 1.493571974 1 14.5266032 DQRPS(ph)SPIR ddPTM_HeLa_A485_30min_R1 4 DQRPSSPIR 9 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.624)S(0.376)PIR;DQRPS(0.75)S(0.25)PIR;DQRPS(0.5)S(0.5)PIR;DQRPS(0.848)S(0.152)PIR ;;; 111.12 0.00043072 12087300000 894493 1015662 945895 807036 1174052 963820 1238674 1004275 851162 1188559 TRUE FALSE FALSE 1093469.882 1134434.836 1295820.922 851122.3332 1057159.261 1014284.125 974021.1809 757974.9816 1021982.406 892273.1151 1.225487873 1.271398652 1.452269379 0.953880957 1.184793358 1.136741775 1.091617762 0.849487639 1.145369494 1 19.76712585 -5.737161674 0.714022782 1.009092364 1.313383815 0.39443252 0.126516038 0.806518766 0.879809022 0.076870939 0.142733911 1.83E-06 5.737161674 0.30429145 DQRPS(ph)SPIR ddPTM_HeLa_A486_30min_R1 1 DQRPSSPIR 9 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.653)S(0.347)PIR 109.24 0.00047458 4530100000 497870 562310 411800 209910 597330 469400 440650 526440 483510 511240 TRUE FALSE FALSE 462971.884 517750.5077 571259.9884 488681.0883 522407.3015 411490.2005 330394.7093 406581.1041 525421.0361 383222.1764 1.20810306 1.351045267 1.490675706 1.275190003 1.363196949 1.073764061 0.862149243 1.060954008 1.371061145 1 18.54782152 -6.265595758 22.05304439 1.064180455 1.343419135 0.485185413 0.135762009 61.77941085 327787.557 0.048473521 0.044408585 5.43E-07 6.265595758 0.279238681 DQRPS(ph)SPIRHQGR ddPTM_HeLa_A485_30min_R1 4 DQRPSSPIRHQGR 13 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.5)S(0.5)PIRHQGR;DQRPS(0.5)S(0.5)PIRHQGR;DQRPS(0.5)S(0.5)PIRHQGR;DQRPS(0.5)S(0.5)PIRHQGR ;;; 99.055 0.00039551 615182000 0 14417.68 776.15 0 17148.19 17376.9 11517.22 42379.5 0 960.48 TRUE FALSE FALSE 0 16103.70226 1063.280183 0 15440.85599 18286.72761 9056.47186 31985.86118 0 721.0500123 0 22.3336828 1.474627509 0 21.41440362 25.36124721 12.56011609 44.3601146 0 1 9.493955519 DQRPS(ph)SPIRHQGR ddPTM_HeLa_A486_30min_R1 1 DQRPSSPIRHQGR 13 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.5)S(0.5)PIRHQGR 48.823 0.025578 20612000 0 0 0 0 984.97 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 861.4258781 0 0 0 0 0 0 DQRPSS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 DQRPSSPIR 9 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.123)S(0.877)PIR 105.17 0.00056907 2226400000 100940 99828 94558 29040 109950 91510 120550 124970 98528 117960 TRUE FALSE FALSE 93864.62725 91917.26571 131173.39 67606.5876 96159.04576 80220.42661 90387.11495 96517.05908 107068.4864 88422.04821 1.061552284 1.0395288 1.483491873 0.764589703 1.087500773 0.90724461 1.022223719 1.091549687 1.210879962 1 16.43211853 -5.273235586 24.99986628 1.015020193 1.179324794 0.217351102 0.158117269 1255.307595 2660389.768 0.044353546 0.066415639 5.33E-06 5.273235586 0.1643046 DQRPSS(ph)PIRHQGR ddPTM_HeLa_A485_30min_R1 3 DQRPSSPIRHQGR 13 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.203)S(0.797)PIRHQGR;DQRPS(0.144)S(0.856)PIRHQGR;DQRPS(0.167)S(0.833)PIRHQGR ;; 110.12 0.00014349 958650000 7581.4 22790.4 19635.2 5072.5 23570.5 20444.1 28764.3 57150 15849.7 7551.8 TRUE FALSE FALSE 9267.856274 25455.53903 26899.07757 5349.597831 21223.73826 21514.52146 22618.57232 43133.87289 19030.58941 5669.275241 1.634751513 4.490086995 4.744711877 0.943612297 3.74364224 3.794933312 3.989676169 7.608357517 3.356794052 1 12.4689486 -6.529968426 2.308066727 4.527306635 3.166856076 0.020110792 1.880008005 0.777625884 8.332541074 0.795497516 0.614747613 2.95E-07 6.529968426 -1.360450559 DQRPSS(ph)PIRHQGR ddPTM_HeLa_A486_30min_R1 1 DQRPSSPIRHQGR 13 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DQRPS(0.106)S(0.894)PIRHQGR 121.19 3.29E-05 165680000 3719.3 4952.3 3097.8 0 5879.5 0 2849.6 3300 0 4315.3 TRUE FALSE FALSE 3458.596276 4559.861712 4297.351122 0 5142.038286 0 2136.59994 2548.662038 0 3234.720792 1.069210142 1.409661608 1.328507589 0 1.589638988 0 0.660520668 0.787907891 0 1 11.65942547 -5.223942894 24.50943748 0.58967784 1.283180346 0.302214212 0.481621828 537.2939516 351199.1579 0.122882459 0.212831171 5.97E-06 5.223942894 0.693502506 DQS(ph)PFSK ddPTM_HeLa_A485_30min_R1 6 DQSPFSK 7 0 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 DQS(0.999)PFS(0.001)K;DQS(1)PFSK;DQS(1)PFSK;DQS(1)PFSK;DQS(1)PFSK;DQS(1)PFSK ;;;;; 171.5 0.00028285 32008900000 19338600 15299900 12036470 28643000 21436900 17963700 30086800 25558100 14847700 34921000 TRUE FALSE FALSE 23640404.85 17089090.21 16489261.13 30207694.56 19302566.97 18904251.55 23658509.39 19289935.9 17827497.2 26215837.37 0.901760433 0.651861315 0.628980906 1.152268918 0.736294122 0.721100428 0.902451028 0.735812312 0.680027761 1 24.64393529 -11.40777973 2.293238577 2.808777126 0.790012963 0.150416208 0.149681498 7224302.829 1273799.691 67158681.77 0.038280441 3.91E-12 11.40777973 -2.018764163 DQS(ph)PFSK ddPTM_HeLa_A486_30min_R1 7 DQSPFSK 7 0 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 DQS(1)PFSK;DQS(1)PFSK;DQS(1)PFSK;DQS(0.996)PFS(0.004)K;DQS(1)PFSK;DQS(1)PFSK;DQS(1)PFSK ;;;;;; 175.65 0.00029153 36252780000 18723390 18169820 8894240 8908870 16870630 21333980 26737210 24520840 14665940 28901450 TRUE FALSE FALSE 17410977.05 16729977.29 12338327.92 20740299.59 14754558.27 18702010.46 20047277.26 18937980.02 15937195.49 21664338.8 0.803669902 0.772235767 0.569522478 0.957347454 0.681052785 0.863262462 0.925358371 0.874154535 0.735641906 1 24.36881887 -6.391938334 7.500204209 0.876118856 0.758587253 0.238170708 0.110006582 0.431099897 24.3018344 0.03788511 0.033334425 4.06E-07 6.391938334 -0.117531603 DQS(ph)PPPS(ph)PPPSYHPPPPPTK ddPTM_HeLa_A485_30min_R1 4 DQSPPPSPPPSYHPPPPPTK 20 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 2 0 DQS(0.999)PPPS(0.976)PPPS(0.016)Y(0.009)HPPPPPTK;DQS(0.999)PPPS(0.987)PPPS(0.011)Y(0.003)HPPPPPTK;DQS(1)PPPS(0.99)PPPS(0.009)Y(0.001)HPPPPPTK;DQS(0.993)PPPS(0.803)PPPS(0.132)Y(0.072)HPPPPPTK ;;; 78.128 0.0026804 2736830000 1213040 1194570 1067810 775790 1775450 1040070 1606420 1031780 1315750 1962410 TRUE FALSE FALSE 1482876.563 1334264.57 1462837.354 818169.4433 1598679.964 1094526.457 1263195.244 778734.3372 1579808.956 1473217.302 1.006556576 0.905680763 0.992954231 0.555362364 1.08516236 0.742949771 0.857439864 0.528594346 1.072352974 1 20.49053882 DQS(ph)PPPS(ph)PPPSYHPPPPPTK ddPTM_HeLa_A486_30min_R1 4 DQSPPPSPPPSYHPPPPPTK 20 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 2 0 DQS(1)PPPS(0.998)PPPS(0.002)YHPPPPPTK;DQS(1)PPPS(0.998)PPPS(0.001)Y(0.001)HPPPPPTK;DQS(0.99)PPPS(0.963)PPPS(0.016)Y(0.03)HPPPPPTK;DQS(1)PPPS(0.986)PPPS(0.011)Y(0.004)HPPPPPTK ;;; 98.326 0.00026741 3163710000 2073230 2224850 1407830 139590 2360420 1869800 2147870 1886980 2107210 1070930 TRUE FALSE FALSE 1927907.283 2048544.783 1952979.479 324972.5745 2064354.114 1639123.087 1610450.208 1457355.846 2289864.659 802762.1574 2.401592135 2.551870145 2.432824543 0.404818004 2.571563812 2.041853956 2.00613618 1.81542669 2.852482069 1 19.61461308 -10.94791584 2.662164785 0.208138789 2.090005762 0.211981987 0.645430242 81302464.5 74087761.13 401735989.2 0.169354495 1.13E-11 10.94791584 1.881866973 DQS(ph)PSRAPGLR ddPTM_HeLa_A485_30min_R1 5 DQSPSRAPGLR 11 1 P09601 P09601 HMOX1 Heme oxygenase 1 1 0 DQS(0.996)PS(0.004)RAPGLR;DQS(0.97)PS(0.03)RAPGLR;DQS(0.939)PS(0.061)RAPGLR;DQS(1)PSRAPGLR;DQS(0.995)PS(0.005)RAPGLR ;;;; 107.46 0.00032013 23400300000 6933570 8042100 5913460 6581850 8407680 7408510 9832000 10510700 6315840 11719600 TRUE FALSE FALSE 8475918.726 8982553.638 8101094.934 6941399.799 7570581.858 7796408.128 7731312.88 7932934.345 7583371.156 8798119.403 0.96337846 1.020962916 0.920775743 0.788964037 0.860477281 0.886144842 0.878746074 0.901662501 0.86193092 1 23.06876375 -4.956824868 5.861843935 0.875840378 0.989262325 0.416430107 0.050889531 0.156238152 13.16888472 0.012860234 0.027035828 1.10E-05 4.956824868 0.113421947 DQS(ph)PSRAPGLR ddPTM_HeLa_A486_30min_R1 5 DQSPSRAPGLR 11 1 P09601 P09601 HMOX1 Heme oxygenase 1 1 0 DQS(0.984)PS(0.016)RAPGLR;DQS(0.977)PS(0.023)RAPGLR;DQS(1)PSRAPGLR;DQS(0.963)PS(0.037)RAPGLR;DQS(0.997)PS(0.003)RAPGLR ;;;; 122.97 3.43E-05 18521200000 8022180 7977930 6737140 2845150 9601780 7857730 9463740 8816600 7528110 10259290 TRUE FALSE FALSE 7459866.609 7345729.772 9345941.035 6623652.986 8397435.219 6888323.164 7095812.155 6809252.645 8180652.636 7690297.007 0.970036216 0.955194548 1.215289998 0.861300023 1.091952003 0.895716142 0.922696763 0.885434287 1.063762899 1 22.87460789 -6.274398997 24.80768978 0.944435087 1.017394611 0.093666824 0.09942452 1623.636082 3108003.968 0.03374985 0.02995297 5.32E-07 6.274398997 0.072959524 DQS(ph)TPIIEVEGPLLSDTHVTFK ddPTM_HeLa_A485_30min_R1 1 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 DQS(0.628)T(0.372)PIIEVEGPLLSDTHVTFK 189.12 7.18E-20 143780000 122570 144940 102520 84365 172470 132960 165730 200900 130920 166880 TRUE FALSE FALSE 149835.2736 161889.4722 140446.4142 88973.64633 155298.2812 139921.58 130320.4316 151628.96 157194.4431 125279.8872 1.196004219 1.292222366 1.121061148 0.710198966 1.239610641 1.116871855 1.040234267 1.210321652 1.254746046 1 16.93479529 -7.274047602 24.40838298 1.174400379 1.10109905 0.017743044 0.161256473 2448.302339 4739658.782 0.090694537 0.044096433 5.32E-08 7.274047602 -0.073301329 DQS(ph)TPIIEVEGPLLSDTHVTFK ddPTM_HeLa_A486_30min_R1 1 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 DQS(0.5)T(0.5)PIIEVEGPLLSDTHVTFK 221.69 4.65E-36 101860000 171350 174460 114690 6720.2 169670 160330 176890 160970 152380 109000 TRUE FALSE FALSE 159339.2499 160635.1542 159101.0395 15644.96522 148388.4065 140550.1147 132630.251 124320.645 165588.4211 81705.69053 1.950160984 1.966021622 1.947245516 0.191479506 1.816133069 1.720199827 1.623268223 1.521566541 2.026644901 1 16.31814894 DQS(ph)TSMSHINLLFSR ddPTM_HeLa_A485_30min_R1 2 DQSTSMSHINLLFSR 15 0 Q5VUB5 Q5VUB5 FAM171A1 Protein FAM171A1 1 0 DQS(0.391)T(0.271)S(0.271)MS(0.067)HINLLFSR;DQS(0.381)T(0.282)S(0.282)MS(0.055)HINLLFSR ; 85.808 0.0011021 248969000 77514 78435 64892 71456 73521 82550 89059 104456 66825 134145 TRUE FALSE FALSE 94756.72188 87607.29096 88898.25118 75359.46034 66200.99109 86872.19035 70030.8171 78838.00222 80236.16454 100705.1203 0.940932513 0.869938795 0.882758006 0.748318061 0.657374629 0.862639259 0.695404731 0.782859918 0.796743645 1 16.61977751 -5.188843995 5.478041112 0.776298445 0.897508358 0.210935801 0.09066163 0.29328192 16.17370771 0.023394198 0.041088853 6.47E-06 5.188843995 0.121209913 DQST(ph)PIIEVEGPLLSDTHVTFK ddPTM_HeLa_A485_30min_R1 1 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 DQS(0.112)T(0.888)PIIEVEGPLLSDTHVTFK 246.31 6.72E-47 179460000 142980 165360 154650 92444 243650 157030 217460 236260 148430 221460 TRUE FALSE FALSE 174785.4077 184697.4136 211861.4705 97493.98164 219391.3505 165251.848 170997.8945 178316.8646 178218.5395 166254.0977 1.051314886 1.110934504 1.274323301 0.586415511 1.319614696 0.993971579 1.028533413 1.072556208 1.071964794 1 17.34303037 DQST(ph)PIIEVEGPLLSDTHVTFK ddPTM_HeLa_A486_30min_R1 1 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 DQS(0.138)T(0.862)PIIEVEGPLLSDTHVTFK 221.73 8.04E-36 141930000 125680 135260 79309 6080.1 143980 121220 152440 127390 124190 91573 TRUE FALSE FALSE 116870.481 124541.505 110019.5688 14154.78007 125920.6858 106265.1089 114297.8997 98386.0779 134954.8892 68642.52476 1.702595897 1.814349129 1.602790241 0.206210073 1.834441351 1.54809441 1.665117943 1.433310885 1.966053691 1 16.066815 DQSTS(ph)MSHINLLFSR ddPTM_HeLa_A485_30min_R1 1 DQSTSMSHINLLFSR 15 0 Q5VUB5 Q5VUB5 FAM171A1 Protein FAM171A1 1 0 DQS(0.119)T(0.083)S(0.796)MS(0.002)HINLLFSR 103.9 0.00026264 106270000 75635 85649 61308 72778 65641 75192 96874 84803 61811 130900 TRUE FALSE FALSE 92459.74481 95664.9055 83988.38044 76753.67786 59105.55156 79128.93685 76176.07851 64004.93128 74215.90074 98269.03904 0.940883779 0.973499959 0.854677946 0.781056563 0.601466669 0.805227543 0.775178828 0.651323468 0.755231775 1 16.58444933 -5.053624855 2.478960935 0.746954534 0.957215672 0.354520101 0.100201125 0.271416128 3.279746424 0.027297553 0.061414829 8.84E-06 5.053624855 0.210261138 DQSTS(ph)MSHINLLFSR ddPTM_HeLa_A486_30min_R1 2 DQSTSMSHINLLFSR 15 0 Q5VUB5 Q5VUB5 FAM171A1 Protein FAM171A1 1 0 DQS(0.04)T(0.025)S(0.931)MS(0.005)HINLLFSR;DQS(0.205)T(0.131)S(0.621)MS(0.043)HINLLFSR ; 126.26 1.86E-05 185917000 117826 125215 129951 20847.1 176998 129171 124165 112688 159324 143660 TRUE FALSE FALSE 109567.0059 115292.5074 180271.5074 48533.10235 154797.2604 113235.1953 93097.60372 87031.40236 173134.3326 107686.6009 1.017461828 1.070630017 1.674038421 0.450688404 1.437479306 1.051525393 0.864523561 0.808191563 1.607761143 1 16.71647923 -5.229835923 24.99738277 1.034259101 1.235701806 0.080240307 0.343576932 2019.753059 1597562.067 0.090087331 0.156017089 5.89E-06 5.229835923 0.201442705 DQTAS(ph)APAT(ph)PLVNK ddPTM_HeLa_A485_30min_R1 1 DQTASAPATPLVNK 14 0 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2;A0A0B4J1Z0 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 2 0 DQT(0.007)AS(0.994)APAT(1)PLVNK 82.01 0.0099941 363160000 296090 358700 437640 286650 497400 353670 429610 484940 331840 358720 TRUE FALSE FALSE 361954.199 400646.8447 599541.2477 302308.9637 447877.1095 372187.6143 337820.3139 366007.7046 398437.2442 269297.7058 1.344067147 1.487746966 2.226313982 1.122582767 1.66313006 1.382067527 1.254449283 1.359119283 1.479541918 1 18.03884241 -6.275616316 0.997879727 1.282226126 1.612004914 0.185265201 0.288155397 0.98546691 2.07286526 0.165922247 0.148856729 5.30E-07 6.275616316 0.329778787 DQTAS(ph)APAT(ph)PLVNK ddPTM_HeLa_A486_30min_R1 1 DQTASAPATPLVNK 14 0 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2;A0A0B4J1Z0 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 2 0 DQTAS(1)APAT(1)PLVNK 137.81 1.71E-05 83988000 269320 285520 190200 139450 327920 330180 425510 413670 212200 353790 TRUE FALSE FALSE 250442.0588 262894.3554 263850.5337 324646.6474 286789.2159 289445.7486 319042.8974 319486.3714 230593.6669 265198.6812 0.944356351 0.991310945 0.994916462 1.224163883 1.081412677 1.091429819 1.203033499 1.204705732 0.869512872 1 18.01671408 -5.053395478 13.81150348 1.10856882 0.974145038 0.222178584 0.101329305 3.463001154 895.084134 0.026857874 0.04656179 8.84E-06 5.053395478 -0.134423782 DQTPAPKT(ph)PNR ddPTM_HeLa_A486_30min_R1 2 DQTPAPKTPNR 11 1 Q9BYW2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 DQTPAPKT(1)PNR;DQTPAPKT(1)PNR ; 125.28 7.35E-05 259850000 413790 396800 253270 229560 445810 452050 594820 592030 323400 594450 TRUE FALSE FALSE 384785.4578 365356.1229 351342.9268 534427.2813 389892.3528 396280.6671 445989.7446 457237.6929 351432.5724 445595.8508 0.863530163 0.819927121 0.788478901 1.199354259 0.874990986 0.889327552 1.000883971 1.02612646 0.788680083 1 18.76537627 DQVANSAFVER ddPTM_HeLa_A485_30min_R1 2 DQVANSAFVER 11 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 254.19 1.37E-35 73764000 56839 66804 66627 66642 107228 69490 91480 100229 65065 94190 FALSE FALSE TRUE 69482.63946 74616.14668 91275.09988 70282.48371 96552.00382 73128.38895 71934.55068 75647.6806 78122.94869 70710.16644 0.982640021 1.055239302 1.290834182 0.993951609 1.365461414 1.034199078 1.017315533 1.0698275 1.104833331 1 16.10963003 DQWEDR ddPTM_HeLa_A485_30min_R1 1 DQWEDR 6 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 141.83 0.0098029 0 327150 397360 318480 362130 470200 446010 561930 498360 349020 556260 FALSE FALSE TRUE 399923.3888 443827.7954 436299.0051 381912.2449 423385.237 469362.3939 441869.065 376136.4286 419065.1126 417594.6192 0.95768329 1.062819718 1.044790773 0.9145526 1.013866601 1.123966575 1.058129211 0.900721444 1.003521342 1 18.6717436 -7.241835185 24.8190625 0.964091027 1.026439329 0.156698796 0.060365669 1316.258083 1666395.658 0.029815186 0.017182231 5.73E-08 7.241835185 0.062348302 DRAS(ph)PAAAEEVVPEWASCLK ddPTM_HeLa_A485_30min_R1 5 DRASPAAAEEVVPEWASCLK 20 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK ;;;; 223.57 9.09E-36 6425140000 5001260 4588380 3822240 5947240 6491130 5331150 7413360 7777100 4965290 8132840 TRUE FALSE FALSE 6113773.033 5124951.127 5236245.633 6272122.662 5844850.305 5610280.77 5829435.074 5869754.031 5961778.159 6105472.662 1.001359497 0.839402846 0.857631493 1.027295184 0.95731332 0.918893766 0.954788498 0.961392239 0.976464639 1 22.54167156 -6.554279345 0.283268385 1.002696304 0.896238997 0.1459172 0.053686972 4.472471363 0.903677974 0.092171032 0.169082209 2.79E-07 6.554279345 -0.106457306 DRAS(ph)PAAAEEVVPEWASCLK ddPTM_HeLa_A486_30min_R1 7 DRASPAAAEEVVPEWASCLK 20 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK ;;;;;; 234.48 2.61E-46 7945570000 5692520 6016913 3798192 2399809 6241889 6306953 7438110 7422307 5032648 7049727 TRUE FALSE FALSE 5293503.744 5540110.901 5268953.662 5586876.632 5458973.078 5528865.263 5577016.206 5732409.724 5468881.981 5284429.473 1.001717171 1.048383923 0.997071432 1.057233645 1.033029792 1.046255852 1.055367705 1.084773627 1.034904905 1 22.33331629 -5.277829358 24.95830897 1.048088482 1.018990148 0.216938696 0.02416947 1099.702203 1674601.051 0.006540456 0.009740366 5.27E-06 5.277829358 -0.029098334 DRCPLPCIPTLIGT(ph)PVK ddPTM_HeLa_A485_30min_R1 2 DRCPLPCIPTLIGTPVK 17 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 DRCPLPCIPTLIGT(1)PVK;DRCPLPCIPTLIGT(1)PVK ; 147.26 7.56E-08 3316800000 2022710 1523750 1329530 2532100 2039190 1809130 2433240 1965390 1552460 3766320 TRUE FALSE FALSE 2472654.861 1701939.308 1821378.473 2670422.211 1836161.084 1903853.249 1913358.396 1483375.021 1864024.482 2827445.738 0.874518944 0.601935268 0.644178047 0.94446453 0.649406303 0.673347405 0.676709148 0.524634302 0.659260921 1 21.43106791 -10.12297979 5.259568071 1.000007562 0.690001165 0.376485019 0.117918152 1.06E-05 1.76E-06 0.115517079 0.028016324 7.53E-11 10.12297979 -0.310006396 DRCPLPCIPTLIGT(ph)PVK ddPTM_HeLa_A486_30min_R1 2 DRCPLPCIPTLIGTPVK 17 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 DRCPLPCIPTLIGT(1)PVK;DRCPLPCIPTLIGT(1)PVK ; 191.41 5.99E-18 3527200000 1898560 2076480 1175470 824530 1626010 2147160 2522400 2196950 1668590 2629500 TRUE FALSE FALSE 1765480.748 1911932.162 1630643.464 1919547.509 1422060.664 1882265.23 1891268.841 1696752.444 1813224.725 1971056.085 0.895702949 0.970003937 0.8272943 0.973867524 0.721471436 0.954952649 0.959520561 0.860834178 0.919925485 1 20.9105374 DRDAS(ph)PSKEER ddPTM_HeLa_A485_30min_R1 7 DRDASPSKEER 11 2 Q9BUQ8;F8W1J5;F8VVA2;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 DRDAS(0.987)PS(0.013)KEER;DRDAS(0.768)PS(0.232)KEER;DRDAS(0.988)PS(0.012)KEER;DRDAS(0.939)PS(0.061)KEER;DRDAS(0.961)PS(0.039)KEER;DRDAS(0.983)PS(0.017)KEER;DRDAS(0.988)PS(0.012)KEER ;;;;;; 178.67 9.99E-11 19469075000 3776284 3065816 2030667 6367147 4035413 3648940 6219645 5922199 3044895 7928731 TRUE FALSE FALSE 4616305.348 3424336.512 2781895.226 6714968.118 3633633.113 3839992.856 4890767.036 4469770.41 3655977.497 5952244.279 0.775557106 0.575301744 0.467369129 1.128140547 0.61046438 0.645133613 0.821667728 0.750938671 0.614218323 1 22.5050023 -11.23150693 2.246611327 1.958234413 0.710746751 0.205099952 0.171345914 20725896.11 3123426.166 101147037.3 0.046331529 5.87E-12 11.23150693 -1.247487662 DRDAS(ph)PSKEER ddPTM_HeLa_A486_30min_R1 7 DRDASPSKEER 11 2 Q9BUQ8;F8W1J5;F8VVA2;Q9BUQ8-2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 DRDAS(0.991)PS(0.009)KEER;DRDAS(0.5)PS(0.5)KEER;DRDAS(0.997)PS(0.003)KEER;DRDAS(0.854)PS(0.146)KEER;DRDAS(0.998)PS(0.002)KEER;DRDAS(0.962)PS(0.038)KEER;DRDAS(0.989)PS(0.011)KEER ;;;;;; 166.04 3.75E-08 18873399000 5131494 3432715 2514403 3290175 3838563 5983280 7153020 5881007 4250431 8231270 TRUE FALSE FALSE 4771802.77 3160694.162 3488047.18 7659693.676 3357094.635 5245123.747 5363258.739 4542030.088 4618861.781 6170106.415 0.773374469 0.512259262 0.565313942 1.241420028 0.544090233 0.850086432 0.869232778 0.736134806 0.748587054 1 22.55686394 -5.20854125 0.048124625 1.460545176 1.14E-14 0.128866304 0.198080986 409.0564196 4.384940414 51.19418124 83.38860031 6.19E-06 5.20854125 -1.460545176 DRDDRDFDFCR ddPTM_HeLa_A485_30min_R1 1 DRDDRDFDFCR 11 2 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 0 158.01 1.56E-07 371540000 9922.7 9363.2 10823 8840.3 15153 8226.1 12015 13813 9668.5 13031 FALSE FALSE TRUE 12129.97038 10458.14479 14826.87808 9323.223204 13644.31411 8656.805876 9447.897096 10425.34009 11608.87927 9782.611518 1.23995217 1.069054492 1.515635989 0.953040319 1.394751707 0.884917679 0.965784758 1.065701124 1.186685094 1 13.25600394 -6.267126334 24.99908084 1.021296996 1.225279713 0.302067768 0.162241452 628.2470088 2761680.102 0.054198854 0.049079415 5.41E-07 6.267126334 0.203982717 DRDNQDREENDKDPER ddPTM_HeLa_A485_30min_R1 1 DRDNQDREENDKDPER 16 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 77.468 0.0037733 652920000 273290 209820 145720 406550 249980 254290 389910 305130 239290 569990 FALSE FALSE TRUE 334082.4177 234356.6238 199627.8919 428758.7971 225091.1135 267604.2312 306602.5432 230296.3891 287313.3081 427901.9829 0.780745196 0.547687632 0.466527149 1.002002361 0.526034285 0.625386752 0.716525175 0.538198929 0.671446545 1 18.70692084 -8.051083008 22.07927262 1.000000001 0.646972861 0.332881629 0.147689061 4225.822482 1826497.77 0.138128959 0.035664744 8.89E-09 8.051083008 -0.353027141 DRDNQDREENDKDPER ddPTM_HeLa_A486_30min_R1 2 DRDNQDREENDKDPER 16 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 223.97 4.82E-34 977840000 555670 569900 273525 302820 431410 667220 743250 668700 450480 921390 FALSE FALSE TRUE 516720.4025 524739.0485 379441.2053 704980.2637 377298.5351 584905.1802 557280.9887 516451.6076 489527.9691 690667.9468 0.748145914 0.759755901 0.549382966 1.020722428 0.54628065 0.846868865 0.806872523 0.747756733 0.708774703 1 19.39763275 -10.57880699 2.696934813 1.018284579 0.749450649 0.251756087 0.130171576 25530824.85 24225627.11 3334652.704 0.031961345 2.64E-11 10.57880699 -0.268833929 DRDS(ph)QRDLVEAVAHILGIR ddPTM_HeLa_A485_30min_R1 1 DRDSQRDLVEAVAHILGIR 19 2 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 DRDS(1)QRDLVEAVAHILGIR 118.35 1.08E-05 7480500 5416.8 7384.9 6177 8259.4 8939.9 8325.1 13935 12246 5504.5 9968.7 TRUE FALSE FALSE 6621.748472 8248.499815 8462.129346 8710.590108 8049.812166 8760.989363 10957.67341 9242.649299 6609.20266 7483.68655 0.884824401 1.102197394 1.130743423 1.163943739 1.075647959 1.170678289 1.464207959 1.235039607 0.88314798 1 12.86953342 -3.560650407 1.136576044 1.164828624 4.82E-18 0.205336808 0.144736345 10.5479245 3.606716144 0.045306645 21.55980827 0.000275011 3.560650407 -1.164828624 DRDS(ph)QRDLVEAVAHILGIR ddPTM_HeLa_A486_30min_R1 1 DRDSQRDLVEAVAHILGIR 19 2 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 DRDS(1)QRDLVEAVAHILGIR 67.251 0.0029914 12934000 4045 3266.3 3103.5 1597.3 5360.3 3917.4 3911.1 2791.1 2221.5 3442.3 TRUE FALSE FALSE 3761.466388 3007.466492 4305.258315 3718.595123 4687.961191 3434.111017 2932.501413 2155.627459 2414.061409 2580.325674 1.457748697 1.165537561 1.668494158 1.441134024 1.816809885 1.330882784 1.136484996 0.835409065 0.93556462 1 11.33333745 -6.827737721 2.462198388 0.921387689 1.498719627 0.703656731 0.165799365 0.162617122 2.006226315 0.082500781 0.052264163 1.49E-07 6.827737721 0.577331938 DRDVYVTTHT(ph)PR ddPTM_HeLa_A486_30min_R1 1 DRDVYVTTHTPR 12 1 P78317;D6RA71;H0YAI5 P78317 RNF4 E3 ubiquitin-protein ligase RNF4 1 0 DRDVYVT(0.018)T(0.144)HT(0.838)PR 74.769 0.010508 84451000 44460 50627 42353 13511 59334 43867 41853 49927 44226 46400 TRUE FALSE FALSE 41343.58359 46615.13214 58753.21585 31454.29081 51891.77645 38455.13555 31380.93672 38559.712 48059.54529 34781.13799 1.188678289 1.340241718 1.689226381 0.904349099 1.491951657 1.105631896 0.90224008 1.108638596 1.381770352 1 15.08601752 -6.373982295 9.061636753 1.092851887 1.320755343 0.204195972 0.220230767 0.579937784 42.98378782 0.077096809 0.067929784 4.23E-07 6.373982295 0.227903457 DRDYSDHPS(ph)GGSYR ddPTM_HeLa_A485_30min_R1 1 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DRDY(0.002)S(0.282)DHPS(0.58)GGS(0.135)Y(0.001)R 46.663 0.030752 206470000 109480 165340 147900 97016 186710 120830 149320 144560 154680 154260 TRUE FALSE FALSE 133833.4483 184675.0747 202614.3646 102315.7384 168120.4968 127156.472 117416.5622 109106.4333 185722.8572 115805.8209 1.155671168 1.594695959 1.74960432 0.883511188 1.451744787 1.098014512 1.013908983 0.94214982 1.603743712 1 16.82134825 -5.259380945 24.99997873 1.145209882 1.50946102 0.294428498 0.253887952 227.2712571 2760220.588 0.068456097 0.111451946 5.50E-06 5.259380945 0.364251138 DRDYSDHPS(ph)GGSYR ddPTM_HeLa_A486_30min_R1 1 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DRDY(0.02)S(0.148)DHPS(0.672)GGS(0.157)Y(0.003)R 46.663 0.014015 0 183040 201820 174000 11859 218360 171780 190760 187170 181680 131410 TRUE FALSE FALSE 170209.8412 185827.0482 241377.4599 27608.35132 190971.2527 150587.5301 143029.8303 144555.4769 197428.1687 98504.08066 1.727947107 1.886490863 2.450431071 0.280276219 1.938714126 1.52874408 1.452019342 1.467507497 2.004263857 1 16.58789587 DRDYSDHPSGGSYR ddPTM_HeLa_A485_30min_R1 3 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ;; ;; 123.1 0.0001126 1656900000 934340 2384220 2380140 257704 2777640 1445750 1688020 1876280 1845620 888420 FALSE FALSE TRUE 1142180.71 2663033.789 3260652.832 271781.717 2501088.409 1521447.234 1327360.737 1416119.388 2216019.005 666953.2442 1.712534903 3.992834299 4.888877684 0.407497406 3.750020606 2.281190245 1.990185592 2.123266362 3.322600234 1 19.3472261 -5.247124044 24.98856791 2.240372572 3.577557257 0.227125291 1.17458548 1246.286825 2175490.447 0.308912034 0.531849302 5.66E-06 5.247124044 1.337184685 DRDYSDHPSGGSYR ddPTM_HeLa_A486_30min_R1 2 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 103.32 0.0015844 625290000 662820 691520 772110 19069.4 957030 393910 480240 464610 674020 127791 FALSE FALSE TRUE 616359.7408 636721.4367 1071091.67 44394.52691 836990.3734 345313.3892 360078.8725 358828.4454 732444.5963 95791.30182 6.434401967 6.646965065 11.18151282 0.463450502 8.737644834 3.604851199 3.758993413 3.745939752 7.646253703 1 16.54760704 -6.092184503 0.13054742 2.89E-11 11.21399026 0.215674875 2.863672514 24.08267071 1.22464574 32.14998183 67.92288952 8.09E-07 6.092184503 11.21399026 DRDYSDHPSGGSYRDS(ph)YESYGNSR ddPTM_HeLa_A486_30min_R1 1 DRDYSDHPSGGSYRDSYESYGNSR 24 2 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DRDYSDHPSGGS(0.001)YRDS(0.999)YES(0.001)YGNSR 127.14 2.25E-06 1093400000 258020 348160 464940 14268 625450 192010 208290 255710 364530 45034 TRUE FALSE FALSE 239934.1304 320570.5336 644977.2195 33216.62506 547000.2289 168321.7584 156173.6389 197490.4151 396127.7539 33757.19328 7.107644538 9.496362182 19.10636392 0.983986577 16.20396057 4.986248621 4.62638104 5.850320952 11.73461759 1 15.04290734 DREAAEGLGSHDR ddPTM_HeLa_A485_30min_R1 2 DREAAEGLGSHDR 13 1 P17655 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 ; ; 133.16 5.37E-05 382370000 180333 212601 194831 186358 238128 212123 260807 279102 178380 248973 FALSE FALSE TRUE 220447.4537 237462.8376 266907.0945 196538.2657 214419.1402 223229.4323 205083.4539 210651.7969 214179.2298 186908.6131 1.179439781 1.270475628 1.428008533 1.051520646 1.147187048 1.194323946 1.097239183 1.127030977 1.145903478 1 17.51197353 -5.919148179 0.168372957 0.955639202 1.417714763 0.384707041 0.088806706 10.41301763 0.656406937 0.457962236 1.259997595 1.20E-06 5.919148179 0.462075561 DREAAEGLGSHDR ddPTM_HeLa_A486_30min_R1 1 DREAAEGLGSHDR 13 1 P17655 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 96.591 0.0037132 92552000 41442 48340 37281 17153 54218 41753 49507 44945 36935 48153 FALSE FALSE TRUE 38537.12981 44509.36235 51717.20162 39933.05086 47417.47288 36601.93937 37119.82497 34712.00464 40136.55554 36095.17538 1.067653209 1.233111126 1.432800951 1.106326551 1.313678972 1.01403966 1.028387439 0.9616799 1.111964553 1 15.13951839 -6.273685982 24.60680526 1.021142606 1.235163946 0.512628511 0.101105157 504.9721796 1014625.492 0.035111635 0.031195551 5.32E-07 6.273685982 0.21402134 DREDS(ph)PER ddPTM_HeLa_A485_30min_R1 2 DREDSPER 8 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 0 DREDS(1)PER;DREDS(1)PER ; 140.09 3.13E-05 350090000 120134 86786 43961 209924 48679 110820 84784 89376 110804 189964 TRUE FALSE FALSE 146857.3938 96934.86776 60224.00327 221391.6166 43832.34784 116622.3638 66669.20578 67456.39586 133041.3464 142609.4708 1.029787103 0.679722512 0.422300166 1.552432775 0.307359305 0.817774326 0.467494938 0.473014839 0.93290681 1 17.12171027 DREDS(ph)PERCS(ph)DS(ph)DEEK ddPTM_HeLa_A485_30min_R1 1 DREDSPERCSDSDEEK 16 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 3 0 DREDS(1)PERCS(1)DS(1)DEEK 130.3 1.64E-05 339880000 323350 211480 177870 929720 368710 187240 490050 250080 248710 1088300 TRUE FALSE FALSE 395278.092 236210.7464 243671.5148 980508.2494 331999.9378 197043.5969 385346.8142 188747.4879 298623.8157 817006.8387 0.483812464 0.289117221 0.298249052 1.200122451 0.406361271 0.241177414 0.471656779 0.231023143 0.365509567 1 19.63998863 -10.14708673 4.141681463 1.000161981 0.444082218 0.281295155 0.267091409 378440403.3 694560325.6 810225.7814 0.069468236 7.13E-11 10.14708673 -0.556079763 DREDS(ph)PERCS(ph)DS(ph)DEEK ddPTM_HeLa_A486_30min_R1 2 DREDSPERCSDSDEEK 16 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 3 0 DREDS(1)PERCS(1)DS(1)DEEK;DREDS(1)PERCS(1)DS(1)DEEK ; 126.86 2.14E-05 616000000 560660 902710 320280 849270 601610 973970 1359790 1070670 590660 1748320 TRUE FALSE FALSE 521360.6293 831175.972 444300.9934 1977143.48 526150.464 853811.484 1019556.16 826901.8136 641858.8844 1310529.292 0.397824476 0.634229221 0.339024084 1.508660273 0.401479362 0.651501259 0.777972813 0.630967822 0.489770727 1 20.32171817 -11.45054797 2.063564822 3.892912109 0.659944861 0.099014059 0.31674622 15519259.98 1019717.436 210306504 0.077723993 3.54E-12 11.45054797 -3.232967248 DREEALHQFR ddPTM_HeLa_A485_30min_R1 5 DREEALHQFR 10 1 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YDH3;O15523-2;O15523;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ;;;; ;;;; 213.81 3.52E-14 1704767000 742287 888115 810250 784495 1063845 922886 1138213 1282254 809694 1110266 FALSE FALSE TRUE 907406.1823 991972.3237 1109995.192 827349.9754 957924.8564 971206.8839 895024.4942 967779.196 972192.1588 833497.1191 1.088673448 1.190132876 1.331732488 0.992624877 1.149283944 1.165219245 1.073818342 1.161106828 1.166401343 1 19.66881769 -14 0.243959682 0.149108705 1.161480028 0.212348032 0.083640247 283.3074517 2.822838032 120.0264502 0.129109986 1.00E-14 14 1.012371323 DREEALHQFR ddPTM_HeLa_A486_30min_R1 4 DREEALHQFR 10 1 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;A0A2R8YDH3;O15523-2;O15523;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ;;; ;;; 201.56 2.97E-13 1552120000 773480 833460 668240 286540 934240 821260 900480 941630 687310 936650 FALSE FALSE TRUE 719263.0463 767413.5942 927000.4241 667079.6009 817058.9078 719941.2912 675170.3797 727241.4046 746886.5842 702106.7434 1.024435462 1.093015558 1.320312663 0.950111371 1.163724626 1.025401476 0.961634945 1.035798917 1.063779249 1 19.42133086 -6.366725558 6.990934211 1.015099727 1.111939097 0.200710921 0.09285803 0.435168227 25.28069648 0.032717931 0.028785877 4.30E-07 6.366725558 0.09683937 DREEDEEDAYER ddPTM_HeLa_A485_30min_R1 1 DREEDEEDAYER 12 1 P49756 P49756 RBM25 RNA-binding protein 25 0 0 113.72 0.00041184 159720000 64389 76739 79027 93157 98365 76684 103660 102470 74873 120200 FALSE FALSE TRUE 78712.11091 85712.95851 108262.3759 98245.93102 88571.43522 80699.05566 81512.19418 77339.07183 89899.32432 90236.35212 0.872288264 0.949871715 1.199764544 1.08876222 0.981549377 0.894307602 0.90331881 0.857072233 0.996265055 1 16.46142113 -6.0199225 5.334575944 0.920791824 1.034901246 0.202068106 0.08991198 0.274915427 23.74716875 0.031448355 0.033135625 9.55E-07 6.0199225 0.114109422 DRELDLR ddPTM_HeLa_A485_30min_R1 2 DRELDLR 7 1 P09661;H0YKK0 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 0 0 ; ; 119.21 0.0090673 0 144500 184000 169260 165440 229010 188210 241880 249300 160870 224870 FALSE FALSE TRUE 176643.5265 205517.1994 231876.3175 174477.5683 206208.9603 198064.3846 190200.362 188158.7841 193155.1334 168814.0474 1.04637931 1.217417641 1.37356056 1.033548872 1.22151541 1.173269568 1.126685634 1.114591984 1.144188747 1 17.36507543 -8.529580701 0.40900392 0.983516615 1.191601441 0.237917725 0.09096155 3.447261634 1.088093474 0.211280453 0.065920515 2.95E-09 8.529580701 0.208084826 DRENYDR ddPTM_HeLa_A485_30min_R1 1 DRENYDR 7 1 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 91.069 0.0084455 319300000 94669 98067 58099 101320 51931 111060 96447 126060 102710 131760 FALSE FALSE TRUE 115727.7924 109535.0826 79592.2378 106854.855 46760.5673 116874.9299 75840.31055 95143.58735 123322.9549 98914.65686 1.169976181 1.107369586 0.804655653 1.080273222 0.472736486 1.181573425 0.766724699 0.961875523 1.246761186 1 16.59389669 -9.907262358 13.33108606 0.999992301 0.963266073 0 0.225747675 0 0 0.211134256 0.051207579 1.24E-10 9.907262358 -0.036726228 DREPHGYS(ph)PER ddPTM_HeLa_A485_30min_R1 2 DREPHGYSPER 11 1 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 DREPHGYS(1)PER;DREPHGYS(1)PER ; 106.3 0.00034167 1603960000 661960 878270 792860 680390 940570 749600 871670 932120 687760 816250 TRUE FALSE FALSE 809210.7183 980976.0366 1086171.908 717557.9829 846923.5483 788847.8969 685430.5836 703516.1085 825787.1235 612773.897 1.320569826 1.600877651 1.772549244 1.170999591 1.382114272 1.287339263 1.11857014 1.148084329 1.347621248 1 19.22499532 -5.2780637 24.96142514 1.22084559 1.568286788 0.550144291 0.147533719 586.5910173 880765.3297 0.041686533 0.062025895 5.27E-06 5.2780637 0.347441198 DREPHGYS(ph)PER ddPTM_HeLa_A486_30min_R1 1 DREPHGYSPER 11 1 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 DREPHGYS(1)PER 119.02 0.00010641 586750000 518230 540050 480940 209040 620680 516800 554610 521620 507080 625480 TRUE FALSE FALSE 481904.7531 497254.4712 667172.848 486655.6843 542828.5268 453042.4704 415840.7119 402858.5129 551034.1027 468855.7368 1.027831623 1.060570304 1.422981091 1.037964658 1.157773029 0.96627264 0.886926786 0.859237674 1.17527431 1 18.83878456 -6.26438785 22.7020311 0.963081135 1.146826578 0.276218925 0.131458771 92.07305973 708918.5856 0.0456922 0.042129739 5.44E-07 6.26438785 0.183745443 DREREPEAAS(ph)SRGSPVR ddPTM_HeLa_A485_30min_R1 2 DREREPEAASSRGSPVR 17 3 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 DREREPEAAS(0.432)S(0.432)RGS(0.136)PVR;DREREPEAAS(0.333)S(0.333)RGS(0.333)PVR ; 114.88 0.00063329 539069000 53115 91619 66195 42462 120919 116288 133837 233279 70274 87695 TRUE FALSE FALSE 64930.24851 102333.0451 90683.2851 44781.59154 108879.8798 122376.6599 105241.6316 176066.9595 84377.34721 65834.25041 0.986268517 1.554404348 1.377448434 0.680217231 1.653848553 1.858860078 1.598584794 2.674397573 1.28166337 1 16.00655072 -5.976838911 24.47505976 1.77923387 1.191308034 0.221797341 0.465275886 244.6961844 258576.5255 0.139268163 0.157905213 1.05E-06 5.976838911 -0.587925835 DREREPEAAS(ph)SRGSPVR ddPTM_HeLa_A486_30min_R1 2 DREREPEAASSRGSPVR 17 3 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 DREREPEAAS(0.95)S(0.007)RGS(0.043)PVR;DREREPEAAS(0.357)S(0.357)RGS(0.286)PVR ; 179.78 9.07E-17 3981895000 266622 217498 243588 137047.2 476108 224912 386450 411804 187476 348569 TRUE FALSE FALSE 247933.1746 200262.6664 337911.7971 319052.8076 416390.0951 197164.6442 289756.1225 318045.2188 203726.5706 261285.0536 0.948899186 0.766452821 1.293268759 1.221090924 1.593623858 0.754595954 1.108965548 1.217234643 0.779710006 1 17.99526507 -7.760216226 24.99989966 0.889854997 1.115013099 0.119686838 0.242040126 70.98355659 1451087.254 0.192273037 0.063446057 1.74E-08 7.760216226 0.225158102 DREREPEAASSRGS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 DREREPEAASSRGSPVR 17 3 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 DREREPEAAS(0.113)S(0.02)RGS(0.867)PVR;DREREPEAAS(0.004)S(0.001)RGS(0.995)PVR;DREREPEAAS(0.003)SRGS(0.997)PVR;DREREPEAAS(0.273)S(0.273)RGS(0.454)PVR ;;; 205.96 1.82E-24 14219359000 204386 448648 343830 208126 625848 563203 649351 1117969 349947 353475 TRUE FALSE FALSE 249850.9606 501113.4809 471027.025 219495.3964 563536.3756 592691.4382 510611.8541 843785.3498 420178.153 265360.1877 0.941554054 1.888427519 1.775047828 0.827160239 2.123665876 2.233535646 1.924221785 3.179773715 1.583425745 1 18.01759241 -5.809535882 23.18983895 2.123572637 1.42571773 0.200045322 0.604184167 80.46175561 38793.93435 0.180079782 0.204192352 1.55E-06 5.809535882 -0.697854907 DREREPEAASSRGS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 DREREPEAASSRGSPVR 17 3 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 DREREPEAAS(0.059)S(0.095)RGS(0.846)PVR;DREREPEAAS(0.139)S(0.007)RGS(0.854)PVR;DREREPEAAS(0.004)S(0.004)RGS(0.993)PVR ;; 176.46 5.52E-12 4748580000 400360 313423 363265 193462 657826 312945 524663 580653 241212 399482 TRUE FALSE FALSE 372296.8315 288586.22 503930.9366 450389.313 575315.3291 274337.0277 393386.7681 448450.9875 262120.4504 299449.107 1.243272472 0.963723762 1.682860041 1.50405963 1.921245766 0.916139074 1.31370159 1.497586658 0.875342234 1 18.1919513 -6.297989581 24.99924571 1.163724881 1.44978544 0.246821934 0.293883314 1088.746255 744666.5828 0.108360734 0.095568031 5.04E-07 6.297989581 0.286060559 DRES(ph)RS(ph)PFLKPDER ddPTM_HeLa_A485_30min_R1 3 DRESRSPFLKPDER 14 3 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 DRES(1)RS(1)PFLKPDER;DRES(1)RS(1)PFLKPDER;DRES(1)RS(1)PFLKPDER ;; 97.083 0.00053069 1375980000 1221880 999360 718240 1672350 1441820 1327580 2101600 2047650 1020900 2265460 TRUE FALSE FALSE 1493682.991 1116226.459 983946.8645 1763706.246 1298267.338 1397090.036 1652575.992 1545460.627 1225785.266 1700722.515 0.878263784 0.656324856 0.578546386 1.037033514 0.763362234 0.821468537 0.971690548 0.908708278 0.720743834 1 20.69771634 -5.254553468 24.99892047 0.880593768 0.699573001 0.338048252 0.117923529 640.6450507 2325820.692 0.031774333 0.053499941 5.56E-06 5.254553468 -0.181020767 DRES(ph)RS(ph)PFLKPDER ddPTM_HeLa_A486_30min_R1 4 DRESRSPFLKPDER 14 3 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 DRES(1)RS(1)PFLKPDER;DRES(1)RS(1)PFLKPDER;DRES(1)RS(1)PFLKPDER;DRES(1)RS(1)PFLKPDER ;;; 107.41 0.00019331 1989640000 1659500 1555231 687186 792506 1517614 1899890 2376880 2236040 1268182 2465460 TRUE FALSE FALSE 1543177.62 1431988.832 953282.8227 1844994.019 1327260.701 1665500.888 1782159.484 1726942.504 1378109.037 1848092.769 0.835010907 0.774846834 0.515819789 0.998323272 0.718178613 0.90119983 0.964323607 0.934445789 0.745692565 1 20.81760575 -5.789794368 1.26468068 0.903624441 0.735599955 0.217034283 0.128797179 0.693381113 2.333915195 0.051722677 0.072149828 1.62E-06 5.789794368 -0.168024486 DRESRS(ph)PFLKPDER ddPTM_HeLa_A486_30min_R1 1 DRESRSPFLKPDER 14 3 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 DRES(0.208)RS(0.792)PFLKPDER 103.1 0.00046348 180990000 121920 97748 76521 77271 194930 130410 207770 244560 90235 174140 TRUE FALSE FALSE 113374.0376 90002.09249 106151.9805 179890.7931 170480.0617 114321.3401 155783.7484 188879.0267 98056.64245 130534.2105 0.868538884 0.689490457 0.813211955 1.378112238 1.306018254 0.875796005 1.193432341 1.446969541 0.751194971 1 16.99406843 -5.143886564 7.116914788 1.152636129 0.773375294 0.361331458 0.209819835 0.257326845 14.12073886 0.056078423 0.097924772 7.18E-06 5.143886564 -0.379260835 DRFFQGS(ph)QEFLASASASAER ddPTM_HeLa_A485_30min_R1 1 DRFFQGSQEFLASASASAER 20 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 DRFFQGS(1)QEFLASASASAER 47.331 0.022338 70161000 61156 79419 72576 73514 78582 67057 106640 111070 62516 83274 TRUE FALSE FALSE 74759.94121 88706.3612 99424.88254 77529.88367 70758.10016 70568.00083 83855.49283 83829.90835 75062.38777 62515.32434 1.195865846 1.418953867 1.590408169 1.240174061 1.131852084 1.128811241 1.341358998 1.340949747 1.200703804 1 15.93192226 -13.99999996 0.117667922 0.056503408 1.440105427 0.327163131 0.131460518 206.8196761 1.584783719 46.62269754 1.496052914 1.00E-14 13.99999996 1.383602018 DRFGLEGDEESTMLEESVS(ph)PK ddPTM_HeLa_A485_30min_R1 1 DRFGLEGDEESTMLEESVSPK 21 1 Q9Y4G6 Q9Y4G6 TLN2 Talin-2 1 0 DRFGLEGDEESTMLEES(0.001)VS(0.999)PK 149.44 6.94E-10 37132000 26266 20416 16153 60610 31381 19492 35885 35889 20871 69863 TRUE FALSE FALSE 32108.78108 22803.4736 22128.66688 63920.97083 28256.59745 20512.57098 28217.8766 27087.16648 25059.61826 52447.43983 0.612208741 0.434787164 0.421920821 1.218762461 0.538760282 0.391107193 0.538022002 0.516463083 0.477804414 1 15.67858473 -10.35419882 4.268530325 1.000746046 0.573803867 0.244733864 0.225439782 324299813.2 2641.08106 2379182.713 0.056597143 4.42E-11 10.35419882 -0.426942179 DRFGLEGDEESTMLEESVS(ph)PK ddPTM_HeLa_A486_30min_R1 3 DRFGLEGDEESTMLEESVSPK 21 1 Q9Y4G6 Q9Y4G6 TLN2 Talin-2 1 0 DRFGLEGDEESTMLEESVS(1)PK;DRFGLEGDEESTMLEES(0.024)VS(0.976)PK;DRFGLEGDEESTMLEES(0.004)VS(0.996)PK ;; 119.97 1.04E-05 147675000 120077 138825 62750 102367 107776 163655 202789 184089 102213 239802 TRUE FALSE FALSE 111660.2224 127824.0014 87048.4805 238315.5493 94257.72911 143464.91 152049.0473 142175.9533 111072.9051 179754.0184 0.621183456 0.711105112 0.484264448 1.325787048 0.524370637 0.798117958 0.84587287 0.790947288 0.617916118 1 17.4556645 -13.73981515 0.029307896 2.035413394 5.81E-06 0.087909165 0.225895458 4314.512133 9.904004335 522.1790044 223.3896053 1.82E-14 13.73981515 -2.035407587 DRGDAYYDT(ph)DYRHSYEYQR ddPTM_HeLa_A485_30min_R1 1 DRGDAYYDTDYRHSYEYQR 19 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 DRGDAYYDT(0.543)DYRHS(0.457)YEYQR 189.94 2.06E-18 1804700000 453130 627160 564180 401060 576340 588140 593890 684200 458940 522180 TRUE FALSE FALSE 553927.2052 700500.9064 772893.6595 422968.8923 518957.5659 618934.101 467000.5499 516398.8772 551045.0484 392010.136 1.413043068 1.786945903 1.971616518 1.078974377 1.323837111 1.578872698 1.19129713 1.317310013 1.405690817 1 18.58053143 -1 0.077567513 0.625390423 3.45693013 0.342292039 0.233287652 237.0957374 1.348045798 7.693657698 72.22328069 0.1 1 2.831539707 DRGDAYYDT(ph)DYRHSYEYQR ddPTM_HeLa_A486_30min_R1 1 DRGDAYYDTDYRHSYEYQR 19 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 DRGDAYYDT(0.948)DYRHS(0.052)YEYQR 182.53 4.25E-18 897370000 450630 416540 282360 140050 351930 364760 369850 349100 313510 450620 TRUE FALSE FALSE 419043.1641 383531.8534 391697.3539 326043.4777 307787.6578 319759.6198 277309.6181 269617.5508 340685.2992 337781.819 1.240573472 1.13544256 1.15961645 0.965248748 0.911202559 0.946645443 0.8209726 0.798200305 1.008595727 1 18.36573215 -5.295387398 1.707291438 0.897447026 1.197918936 0.749653092 0.068323745 0.177037377 1.00486012 0.021693727 0.044623451 5.07E-06 5.295387398 0.30047191 DRGDAYYDTDYRHS(ph)YEYQR ddPTM_HeLa_A485_30min_R1 2 DRGDAYYDTDYRHSYEYQR 19 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 DRGDAYYDT(0.001)DYRHS(0.999)YEYQR;DRGDAYYDT(0.159)DYRHS(0.841)YEYQR ; 209.3 3.13E-26 1912350000 535830 717480 585330 478580 622540 610430 644810 723210 561190 575500 TRUE FALSE FALSE 655023.5349 801383.0448 801867.9246 504723.6136 560557.7317 642391.1709 507041.0759 545841.6136 673815.6855 432038.4413 1.516123271 1.854888288 1.856010595 1.168237743 1.297471887 1.48688429 1.173601762 1.26340983 1.559619749 1 18.72080016 -5.25962912 24.99366799 1.294543477 1.753595491 0.597672805 0.173987469 107.774735 1488000.119 0.046643561 0.07578882 5.50E-06 5.25962912 0.459052014 DRGDAYYDTDYRHS(ph)YEYQR ddPTM_HeLa_A486_30min_R1 3 DRGDAYYDTDYRHSYEYQR 19 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 DRGDAYYDT(0.012)DYRHS(0.988)YEYQR;DRGDAYYDTDYRHS(1)YEYQR;DRGDAY(0.004)Y(0.004)DT(0.212)DY(0.014)RHS(0.76)Y(0.004)EY(0.001)QR ;; 205.72 4.95E-26 2588390000 1334031 1301031 982259 385862 1162479 1046341 1140224 1179238 1030369 1345937 TRUE FALSE FALSE 1240522.316 1197932.565 1362615.991 898306.2364 1016670.044 917254.0858 854927.8951 910751.25 1119682.215 1008905.615 1.22957222 1.187358409 1.350588173 0.890376883 1.007695893 0.90915748 0.847381443 0.902712044 1.109798774 1 19.94435978 -5.266900021 24.99770733 0.944513094 1.248991485 0.749968142 0.080156416 209.8199535 960513.3678 0.02253627 0.034534933 5.41E-06 5.266900021 0.304478391 DRGFGAPR ddPTM_HeLa_A485_30min_R1 1 DRGFGAPR 8 1 P17844;P17844-2;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 72.23 0.01939 43840000 19565 25653 24450 21223 26372 25795 29306 37560 22805 29655 FALSE FALSE TRUE 23917.16675 28652.8952 33495.07245 22382.35875 23746.31108 27145.58631 23044.53369 28348.35111 27381.75432 22262.55426 1.074322671 1.287044373 1.504547594 1.005381435 1.066648095 1.219338356 1.035125324 1.273364717 1.229946663 1 14.44233151 -5.284510762 24.99807162 1.128495439 1.288478916 0.254123926 0.132775668 1155.139728 1251602.491 0.038133407 0.056604614 5.19E-06 5.284510762 0.159983477 DRGFGAPR ddPTM_HeLa_A486_30min_R1 2 DRGFGAPR 8 1 P17844;P17844-2;J3QRQ7;J3QKN9;X6RLV5;J3QR02;J3KRX8 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 124.74 0.00079588 52236000 63882 59141 52015 25661 73126 58749 70458 71532 48977 77059 FALSE FALSE TRUE 59404.20169 54454.45177 72156.60101 59740.10484 63953.85521 51501.1457 52828.66317 55245.72513 53222.36579 57762.92483 1.028414019 0.942723242 1.249185377 1.034229222 1.10717827 0.891595186 0.914577358 0.95642188 0.921393194 1 15.81785617 -6.259760528 24.98241195 0.932685129 1.072851571 0.433515283 0.077401687 145.6220064 2166961.786 0.026372773 0.025087179 5.50E-07 6.259760528 0.140166442 DRGQAGASRPHAPGT(ph)PAGR ddPTM_HeLa_A485_30min_R1 3 DRGQAGASRPHAPGTPAGR 19 2 Q8TDD1-2 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 DRGQAGASRPHAPGT(1)PAGR;DRGQAGAS(0.001)RPHAPGT(0.999)PAGR;DRGQAGASRPHAPGT(1)PAGR ;; 144.73 2.29E-08 135404000 61236.6 81753 69662 54213.6 100486 76744 88790 105296 70283 76782 TRUE FALSE FALSE 74858.47041 91313.30219 95432.87268 57175.15169 90481.26101 80762.19717 69819.29115 79471.9909 84388.15343 57641.66047 1.298686918 1.584154611 1.65562324 0.991906743 1.569719891 1.401108096 1.211264398 1.378724871 1.464013228 1 15.81482427 -12.56263184 0.239121385 2.47E-10 1.441504058 0.28339028 0.186477197 105.3368809 1.956459682 52.37302733 0.306157694 2.74E-13 12.56263184 1.441504058 DRGQAGASRPHAPGT(ph)PAGR ddPTM_HeLa_A486_30min_R1 2 DRGQAGASRPHAPGTPAGR 19 2 Q8TDD1-2 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 DRGQAGASRPHAPGT(1)PAGR;DRGQAGASRPHAPGT(1)PAGR ; 99.378 0.00026183 191627000 109329 110496 92130 32221 140183 97429 121679 114595 91343 109178 TRUE FALSE FALSE 101665.6017 101739.8945 127805.2033 75012.11636 122599.941 85409.20057 91233.62721 88504.22009 99260.68479 81839.11817 1.242261695 1.243169487 1.561663984 0.916580213 1.498060386 1.043623178 1.114792403 1.081441517 1.212875786 1 16.32050298 -6.30669846 24.9765759 1.097152 1.283701488 0.260316537 0.169589192 647.6129801 357388.2558 0.056606572 0.049922514 4.94E-07 6.30669846 0.186549488 DRGQGASRPHAPGT(ph)PAGR ddPTM_HeLa_A486_30min_R1 1 DRGQGASRPHAPGTPAGR 18 2 Q8TDD1 Q8TDD1 DDX54 ATP-dependent RNA helicase DDX54 1 0 DRGQGASRPHAPGT(1)PAGR 122.34 1.80E-05 43616000 31638 28028 28960 11165 40983 28837 34067 33536 27709 35174 TRUE FALSE FALSE 29420.33958 25806.9592 40174.08758 25992.68425 35842.52999 25279.38413 25543.07628 25900.58489 30110.83843 26366.20146 1.115835348 0.978789427 1.523696451 0.985833484 1.359411975 0.958779905 0.968781048 0.9823404 1.142024136 1 14.68640212 -6.290742799 24.78320451 1.006681103 1.187723345 0.245649363 0.159568641 943.7186828 798141.5525 0.054299069 0.047894127 5.12E-07 6.290742799 0.181042241 DRHDDYYR ddPTM_HeLa_A486_30min_R1 1 DRHDDYYR 8 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 0 107.79 0.0017044 123640000 54250 59775 90797 10656 102750 57132 45601 50359 55339 34335 FALSE FALSE TRUE 50447.35515 55038.2113 125956.03 24807.70652 89862.13689 50083.63472 34191.14748 38893.35503 60135.82908 25737.29252 1.960087881 2.138461583 4.89391143 0.963881749 3.491514767 1.945955841 1.328467144 1.511167307 2.336525065 1 14.65157267 -6.505731586 18.90389021 1.593859096 2.688867197 0.223013393 1.014770704 48.59758475 53578.32568 0.353554249 0.302575447 3.12E-07 6.505731586 1.095008101 DRICS(ph)DEEEDEEKGGRR ddPTM_HeLa_A485_30min_R1 1 DRICSDEEEDEEKGGRR 17 3 Q9NPG3;Q9NPG3-2 Q9NPG3 UBN1 Ubinuclein-1 1 0 DRICS(1)DEEEDEEKGGRR 94.384 0.0041009 1060800000 291640 269370 209920 494900 422150 331510 509910 595920 288630 621930 TRUE FALSE FALSE 356514.3119 300870.4783 287578.1435 521935.1338 380119.2637 348867.351 400963.5629 449769.6856 346555.3935 466894.2968 0.763586778 0.644408125 0.615938437 1.117887148 0.814144157 0.747208423 0.858788736 0.963322295 0.742256643 1 18.83273644 -1.893270652 0.209724175 0.941257754 1.28E-14 0.207606648 0.134929556 59.53984532 1.023796082 0.242938575 17.30262353 0.012785842 1.893270652 -0.941257754 DRICS(ph)DEEEDEEKGGRR ddPTM_HeLa_A486_30min_R1 1 DRICSDEEEDEEKGGRR 17 3 Q9NPG3;Q9NPG3-2 Q9NPG3 UBN1 Ubinuclein-1 1 0 DRICS(1)DEEEDEEKGGRR 100.76 0.0023172 1146900000 336500 358620 173780 274300 405900 385000 585500 548590 268260 623450 TRUE FALSE FALSE 312913.0877 330201.6451 241072.27 638584.2624 354988.2371 337502.6144 439001.7072 423688.0326 291512.9928 467334.062 0.66957047 0.706564473 0.515845708 1.366440656 0.759602747 0.722187065 0.939374514 0.906606359 0.623778613 1 18.83409467 DRISSLPVSRPIS(ph)PSPSAILER ddPTM_HeLa_A485_30min_R1 4 DRISSLPVSRPISPSPSAILER 22 2 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 DRIS(0.003)S(0.003)LPVS(0.082)RPIS(0.589)PS(0.317)PS(0.007)AILER;DRIS(0.007)S(0.007)LPVS(0.272)RPIS(0.69)PS(0.019)PS(0.004)AILER;DRIS(0.023)S(0.012)LPVS(0.239)RPIS(0.605)PS(0.055)PS(0.066)AILER;DRISSLPVS(0.118)RPIS(0.779)PS(0.076)PS(0.027)AILER ;;; 108.78 7.00E-05 789650000 204595 261707 216237 192636 312569 244884 318760 380156 205916 232805 TRUE FALSE FALSE 250106.4519 292311.3571 296232.0647 203159.2169 281448.5329 257705.7476 250654.322 286922.1449 247241.4524 174770.998 1.431052376 1.672539269 1.694972668 1.162430948 1.610384653 1.474533822 1.434187164 1.641703419 1.414659499 1 17.41510627 -8.028362683 21.76938917 0.999999994 1.514713303 0.517154454 0.148957319 436.3406283 334908.0226 0.141630072 0.036568727 9.37E-09 8.028362683 0.514713309 DRISSLPVSRPIS(ph)PSPSAILER ddPTM_HeLa_A486_30min_R1 1 DRISSLPVSRPISPSPSAILER 22 2 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 DRISSLPVS(0.008)RPIS(0.755)PS(0.237)PSAILER 107.31 7.71E-05 216390000 147690 135000 105140 44023 144840 109310 129740 135190 96821 161020 TRUE FALSE FALSE 137337.6937 124302.1083 145853.0237 102487.7688 126672.8166 95824.44358 97277.67975 104410.1882 105213.5222 120699.5439 1.13784766 1.029847374 1.208397472 0.849114797 1.049488776 0.793908912 0.805949025 0.86504211 0.871697761 1 16.8810607 -5.483516669 1.466718958 0.867713181 1.117870155 0.515283879 0.095519407 0.312335685 1.351632364 0.03183496 0.057700917 3.28E-06 5.483516669 0.250156974 DRISSLPVSRPISPS(ph)PSAILER ddPTM_HeLa_A485_30min_R1 1 DRISSLPVSRPISPSPSAILER 22 2 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 DRISSLPVS(0.002)RPIS(0.282)PS(0.712)PS(0.004)AILER 87.485 0.00083719 130550000 53163 70521 57159 51233 79150 79072 88030 99053 51278 68761 TRUE FALSE FALSE 64988.92594 78767.8175 78304.49268 54031.72906 71269.54809 83212.08765 69221.67136 74760.09644 61569.02425 51620.14815 1.258983716 1.525912271 1.516936613 1.046717822 1.380653691 1.61200792 1.340981648 1.448273574 1.19273242 1 15.65564666 -7.988664697 3.628983133 1.001000371 1.393228423 0.409893331 0.150240588 0.197400005 6.479681567 0.147544675 0.039009979 1.03E-08 7.988664697 0.392228052 DRISSLPVSRPISPS(ph)PSAILER ddPTM_HeLa_A486_30min_R1 2 DRISSLPVSRPISPSPSAILER 22 2 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 DRISSLPVS(0.009)RPIS(0.411)PS(0.571)PS(0.009)AILER;DRISSLPVSRPIS(0.103)PS(0.896)PSAILER ; 114.74 4.11E-05 373760000 197866 181523 153137 66920 205546 150714 189518 181296 126143 206637 TRUE FALSE FALSE 183996.6152 167138.4564 212435.7476 155793.1419 179764.504 132120.439 142098.5919 140018.8585 137077.1768 154893.7502 1.187889214 1.079052293 1.371493345 1.005806508 1.160566542 0.852974628 0.917393966 0.903967128 0.884975518 1 17.24091941 -6.254109383 24.75335571 0.906205924 1.159487562 0.63765236 0.093836981 310.7613813 1049440.229 0.030259839 0.029670964 5.57E-07 6.254109383 0.253281638 DRKKS(ph)PIINESR ddPTM_HeLa_A486_30min_R1 2 DRKKSPIINESR 12 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 DRKKS(1)PIINESR;DRKKS(1)PIINESR ; 133.9 0.00011513 331160000 1088820 626040 308100 439110 820250 767110 1256200 1268310 513870 1709120 TRUE FALSE FALSE 1012499.341 576430.3104 427404.5712 1022270.271 717366.5965 672471.7676 941885.4733 979543.5 558412.6653 1281145.227 0.790308014 0.44993362 0.333611336 0.79793473 0.559941669 0.524898937 0.735190245 0.764584279 0.435869918 1 20.28900259 -14 0.255184218 3.499264948 0.564875151 0.351980955 0.159592066 210.9252409 2.084854556 275.7907956 0.221676613 1.00E-14 14 -2.934389797 DRLGS(ph)YSGPTSVSR ddPTM_HeLa_A485_30min_R1 1 DRLGSYSGPTSVSR 14 1 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 DRLGS(1)YSGPTSVSR 147.1 3.68E-08 582440000 184020 167860 168210 197390 208850 153340 196100 198420 182540 260640 TRUE FALSE FALSE 224954.6141 187489.7668 230437.8788 208172.9159 188056.1607 161368.6453 154201.633 149757.1839 219174.1036 195667.2447 1.14967947 0.958207221 1.177702886 1.063912952 0.9611019 0.82470955 0.788080975 0.765366651 1.120136914 1 17.57804274 -5.890285226 3.074556183 0.87873555 1.086246607 0.376507023 0.112446642 0.251555111 4.76211419 0.036652888 0.042454492 1.29E-06 5.890285226 0.207511057 DRLGS(ph)YSGPTSVSR ddPTM_HeLa_A486_30min_R1 2 DRLGSYSGPTSVSR 14 1 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 DRLGS(1)YSGPTSVSR;DRLGS(1)YSGPTSVSR ; 152.89 2.02E-08 950290000 846800 974890 662190 249530 899840 942220 993290 912170 837160 977110 TRUE FALSE FALSE 787443.6929 897636.1659 918607.7021 580918.4505 786973.6765 825978.4762 744758.336 704488.8035 909725.7028 732435.2961 1.075103422 1.225550121 1.254182734 0.793132791 1.074461704 1.127715282 1.016824749 0.961844421 1.242056067 1 19.48234179 DRNGIGPGSHSEFAASIGS(ph)PK ddPTM_HeLa_A486_30min_R1 1 DRNGIGPGSHSEFAASIGSPK 21 1 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 DRNGIGPGSHSEFAAS(0.006)IGS(0.994)PK 61.703 0.010204 104320000 112830 94530 58509 54627 95194 106350 140310 126490 76249 186190 TRUE FALSE FALSE 104921.1997 87039.09853 81165.25173 127174.4167 83253.88087 93229.61829 105202.954 97690.98826 82858.32471 139566.8121 0.751763246 0.623637505 0.581551233 0.91120815 0.596516318 0.667992748 0.753782023 0.699958585 0.593682147 1 17.0905964 -10.80477522 2.929798853 1.083727667 0.687497718 0.491271671 0.0956491 26547429.4 21731455.02 15783648.07 0.023003284 1.57E-11 10.80477522 -0.396229948 DRNS(ph)VGPSR ddPTM_HeLa_A485_30min_R1 3 DRNSVGPSR 9 1 C9JUL4;Q9UDY4 C9JUL4 DNAJB4 DnaJ homolog subfamily B member 4 1 0 DRNS(1)VGPSR;DRNS(1)VGPSR;DRNS(1)VGPSR ;; 109.15 0.00047669 1678707000 306486 344191 315621 279258 377281 365830 416313 509889 330590 443202 TRUE FALSE FALSE 374662.7533 384441.1434 432382.342 294513.1574 339717.5789 384984.2931 327364.3266 384837.9233 396936.3806 332719.8979 1.126060556 1.155449812 1.299538575 0.885168453 1.021031748 1.157082265 0.983903664 1.156642346 1.193004636 1 18.34394862 -5.240642973 24.98564266 1.062881616 1.189859639 0.290685617 0.097675837 1173.300511 1409648.445 0.027246177 0.047130264 5.75E-06 5.240642973 0.126978023 DRNVIPDT(ph)PPSTPLVPSR ddPTM_HeLa_A485_30min_R1 2 DRNVIPDTPPSTPLVPSR 18 1 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 DRNVIPDT(0.983)PPS(0.008)T(0.008)PLVPSR;DRNVIPDT(0.999)PPSTPLVPSR ; 73.122 0.0066425 273550000 125904 184163 156553 132255 186752 162401 184866 232030 156690 178902 TRUE FALSE FALSE 153910.9104 205699.2608 214468.4694 139479.7558 168158.3152 170904.0652 145367.8689 175124.2787 188136.2458 134305.0238 1.145980292 1.531582773 1.596876001 1.038529697 1.252062733 1.272506868 1.082371044 1.303929471 1.400813167 1 17.03515375 -5.260404149 24.99839235 1.206729546 1.435489989 0.300448784 0.160961654 117.9061122 2847114.772 0.04417114 0.071224549 5.49E-06 5.260404149 0.228760443 DRPFFAGLVK ddPTM_HeLa_A485_30min_R1 2 DRPFFAGLVK 10 1 Q32Q12;P22392-2;J3KPD9;E7ERL0;P15531;P15531-2;E5RHP0 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ; ; 136.48 0.0006526 0 355910 361680 319840 423080 482430 483220 584030 542140 377030 590330 FALSE FALSE TRUE 435080.9516 403975.3298 438162.1257 446191.7891 434397.5753 508520.652 459247.2194 409179.315 452696.4627 443171.5952 0.981743768 0.911555105 0.988696321 1.006814954 0.980201755 1.147457683 1.03627404 0.923297701 1.021492504 1 18.75750589 -5.089941118 2.448647956 1.019031104 0.94665026 0.194098235 0.05543095 0.489649556 5.728952117 0.016980577 0.036964194 8.13E-06 5.089941118 -0.072380844 DRPFFAGLVK ddPTM_HeLa_A486_30min_R1 2 DRPFFAGLVK 10 1 Q32Q12;P22392-2;J3KPD9;E7ERL0;P15531;P15531-2;E5RHP0 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ; ; 127.51 0.0012393 0 278880 298710 200454 130163 412150 306550 343860 360100 273600 370380 FALSE FALSE TRUE 259331.9521 275039.1317 278075.1571 303026.0421 360454.3039 268730.9778 257822.591 278113.0909 297315.8683 277634.4372 0.934077036 0.990652076 1.001587411 1.091456972 1.298305453 0.967930998 0.92864053 1.001724043 1.070889733 1 18.082827 -4.766352635 2.275222951 1.051778588 0.948584348 0.12505117 0.095756227 0.745266004 7.465912443 0.029207962 0.101548628 1.71E-05 4.766352635 -0.103194241 DRPFFPGLVK ddPTM_HeLa_A485_30min_R1 3 DRPFFPGLVK 10 1 Q32Q12;P22392-2;P22392;J3KPD9;F6XY72;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 0 ;; ;; 118.28 0.00073485 1016481000 856966 966803 844653 924090 1164630 1105423 1408030 1359430 899537 1172850 FALSE FALSE TRUE 1047595.13 1079862.201 1157125.294 974570.6968 1048675.348 1163301.239 1107192.888 1026027.661 1080065.825 880480.0797 1.189799922 1.226447055 1.314198152 1.106862857 1.191026773 1.321212445 1.25748772 1.165304798 1.22667832 1 19.74793084 -9.015886757 0.987096864 0.997587638 1.225873534 0.537953784 0.06174509 6.846139273 5.858779876 0.122127804 0.019682119 9.64E-10 9.015886757 0.228285896 DRPFFPGLVK ddPTM_HeLa_A486_30min_R1 2 DRPFFPGLVK 10 1 Q32Q12;P22392-2;P22392;J3KPD9;F6XY72;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 0 ; ; 122.69 0.00018083 643230000 1013270 1037610 758010 445740 1487560 1125130 1191840 1143930 983230 1146560 FALSE FALSE TRUE 942245.0055 955386.0047 1051531.772 1037705.246 1300976.354 986322.9001 893629.026 883482.1108 1068457.168 859453.9131 1.09632988 1.111619821 1.223488259 1.207400688 1.513724394 1.147615812 1.039763753 1.027957517 1.243181457 1 19.71306075 -6.518275452 24.93229427 1.082003201 1.233076898 0.256845215 0.122627019 296.4131722 1605446.52 0.0483992 0.038488888 3.03E-07 6.518275452 0.151073697 DRPGS(ph)PES(ph)PLLDAPFSR ddPTM_HeLa_A485_30min_R1 1 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 2 0 DRPGS(1)PES(1)PLLDAPFSR 108.64 0.00019555 60252000 63786 81211 72608 62451 95955 77955 97547 104530 74413 91274 TRUE FALSE FALSE 77974.97564 90707.92001 99468.72067 65862.54 86401.38328 82036.60326 76705.28656 78893.8536 89347.00654 68521.07157 1.137970756 1.323795993 1.451651563 0.961201255 1.260946178 1.197246356 1.119440849 1.151380908 1.303934753 1 16.06426009 -14 0.143397469 0.304203053 1.279946207 0.186522581 0.128204214 235.0300083 2.041105437 47.22747972 0.743993435 1.00E-14 14 0.975743154 DRPGS(ph)PES(ph)PLLDAPFSR ddPTM_HeLa_A486_30min_R1 1 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 2 0 DRPGS(1)PES(1)PLLDAPFSR 111.67 0.00015909 72781000 99892 104260 72413 35274 106560 93264 108400 107060 79811 104200 TRUE FALSE FALSE 92890.08664 95998.05789 100453.2529 82119.65465 93194.25117 81758.03592 81277.17346 82684.7751 86729.08174 78107.64177 1.189257345 1.229048217 1.286087387 1.051365177 1.193151516 1.046735429 1.040579022 1.058600327 1.110378956 1 16.25317608 -5.661108932 1.064893687 1.05507658 1.233448273 0.59197922 0.058637853 0.365906683 0.873362628 0.024542288 0.041958981 2.18E-06 5.661108932 0.178371693 DRPGS(ph)PESPLLDAPFSR ddPTM_HeLa_A485_30min_R1 4 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 DRPGS(0.999)PES(0.001)PLLDAPFSR;DRPGS(1)PESPLLDAPFSR;DRPGS(0.999)PES(0.001)PLLDAPFSR;DRPGS(0.999)PES(0.001)PLLDAPFSR ;;; 196.1 3.70E-19 1500290000 600940 744870 664020 662310 923770 753210 926550 990250 678250 920180 TRUE FALSE FALSE 734617.0298 831976.067 909668.6302 698490.3182 831796.2152 792646.9109 728585.0233 747389.6348 814368.5537 690796.0607 1.063435465 1.204372918 1.316841079 1.011138248 1.204112563 1.147439825 1.0547035 1.081925155 1.178884189 1 19.39790033 -10.66245176 0.161682769 0.830568007 1.200169748 0.200391411 0.085736406 54.53836715 1.442947572 4.111574872 0.445045318 2.18E-11 10.66245176 0.36960174 DRPGS(ph)PESPLLDAPFSR ddPTM_HeLa_A486_30min_R1 4 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 DRPGS(0.999)PES(0.001)PLLDAPFSR;DRPGS(0.999)PES(0.001)PLLDAPFSR;DRPGS(0.999)PES(0.001)PLLDAPFSR;DRPGS(1)PESPLLDAPFSR ;;; 200.29 2.44E-25 1415470000 919110 941460 769500 375955 1093210 959360 1113830 1109420 806240 1063140 TRUE FALSE FALSE 854685.1353 866855.2809 1067471.008 875242.2397 956089.408 841003.9173 835137.9531 856829.2845 876125.5324 796922.8241 1.072481688 1.087753111 1.339491072 1.09827729 1.199726472 1.055314131 1.047953362 1.075172223 1.099385669 1 19.60408049 -6.273512867 24.13032706 1.059787597 1.162150575 0.324324266 0.074870691 619.2658592 1237672.957 0.026552054 0.023606028 5.33E-07 6.273512867 0.102362978 DRPKS(ph)TLMNFSK ddPTM_HeLa_A485_30min_R1 2 DRPKSTLMNFSK 12 2 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 DRPKS(0.97)T(0.03)LMNFSK;DRPKS(0.929)T(0.071)LMNFSK ; 164.41 1.12E-10 517520000 417230 420100 247800 477200 616770 629370 885530 1166400 408340 680940 TRUE FALSE FALSE 510041.3741 469227.0406 339471.5318 503268.2277 555362.2132 662322.84 696329.2814 880338.5712 490290.0925 511194.1898 0.997744858 0.917903705 0.66407549 0.984495203 1.086401654 1.295638435 1.362161964 1.72212163 0.959107326 1 18.96351191 -5.966201401 1.972934893 1.321419894 0.866750073 0.396527033 0.21570999 0.293709623 2.315839024 0.077427283 0.087040331 1.08E-06 5.966201401 -0.454669821 DRPKST(ph)LMNFSK ddPTM_HeLa_A486_30min_R1 2 DRPKSTLMNFSK 12 2 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 DRPKS(0.038)T(0.962)LMNFSK;DRPKS(0.076)T(0.924)LMNFSK ; 244 6.10E-28 641470000 580730 539540 347560 387190 726610 716270 940600 926860 447750 854340 TRUE FALSE FALSE 540023.8259 496784.8854 482144.54 901397.8875 635471.7984 627903.8899 705251.9313 715834.2112 486561.3305 640407.7032 0.843250047 0.775732214 0.752871237 1.407537547 0.992292559 0.98047523 1.101254604 1.117778889 0.759768079 1 19.28863114 DRPPCS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 DRPPCSPSR 9 1 X6R242;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY4 X6R242 PTBP3 Polypyrimidine tract-binding protein 3 1 0 DRPPCS(0.968)PS(0.032)R;DRPPCS(0.649)PS(0.351)R;DRPPCS(0.823)PS(0.177)R;DRPPCS(0.878)PS(0.122)R ;;; 86.838 0.0019812 5267890000 428483 509288 525217 850760 567606 578629 610606 674383 480790 752784 TRUE FALSE FALSE 523797.5651 568844.8014 719516.6244 897234.8646 511093.1537 608925.1197 480145.0399 508989.5119 577280.1429 565128.8028 0.92686404 1.00657549 1.273190503 1.58766437 0.904383481 1.077497938 0.849620542 0.900661069 1.021501895 1 19.10822019 DRPPCS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 DRPPCSPSR 9 1 X6R242;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;B1ALY4 X6R242 PTBP3 Polypyrimidine tract-binding protein 3 1 0 DRPPCS(0.5)PS(0.5)R;DRPPCS(0.958)PS(0.042)R;DRPPCS(0.992)PS(0.008)R;DRPPCS(0.974)PS(0.026)R ;;; 69.03 0.0075647 5641790000 580167 580304 555261 2333563 664635 835932 736136 736850 503381 1542629 TRUE FALSE FALSE 539500.2893 534318.5976 770272.9296 5432652.596 581270.2808 732803.209 551946.9867 569085.3403 547014.4704 1156344.658 0.46655665 0.462075553 0.66612746 4.698125736 0.502679091 0.633723868 0.47732048 0.492141626 0.473054869 1 20.14114004 DRPVGGS(ph)PGGPR ddPTM_HeLa_A485_30min_R1 6 DRPVGGSPGGPR 12 1 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR ;;;;; 120.59 5.70E-05 11085580000 1368236 2288138 2364602 1345816 2226758 2020425 1975005 2282168 2019717 2003584 TRUE FALSE FALSE 1672595.378 2555715.835 3239366.679 1419334.52 2005054.155 2126211.329 1553029.047 1722462.72 2425055.676 1504127.382 1.112003809 1.699135236 2.153651824 0.943626542 1.333034807 1.413584617 1.032511652 1.145157478 1.612267488 1 20.52049532 -5.28016591 24.98186054 1.223534861 1.659350887 0.310279036 0.302601532 972.2405267 1297001.337 0.085365395 0.126859434 5.25E-06 5.28016591 0.435816027 DRPVGGS(ph)PGGPR ddPTM_HeLa_A486_30min_R1 6 DRPVGGSPGGPR 12 1 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR ;;;;; 132.4 1.15E-05 15108320000 948012 1098107 1169269 299363 1414129 905242 1015162 1003406 931019 987111 TRUE FALSE FALSE 881561.2543 1011089.002 1622041.271 696932.193 1236755.755 793562.4459 761157.7303 774952.358 1011720.477 739931.9806 1.191408504 1.366462092 2.192149162 0.941886837 1.671445196 1.072480264 1.028686082 1.047329185 1.367315514 1 19.49703313 -6.278283611 24.32464929 1.101465482 1.477252968 0.250778801 0.319284358 845.0445024 1220319.106 0.110726957 0.097931597 5.27E-07 6.278283611 0.375787486 DRQRS(ph)PIALPVK ddPTM_HeLa_A485_30min_R1 1 DRQRSPIALPVK 12 2 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 DRQRS(1)PIALPVK 54.7 0.018691 69613000 62670 127780 85904 57223 143720 167130 192020 296700 83977 72970 TRUE FALSE FALSE 76610.72529 142722.7595 117683.4644 60348.94759 129410.7322 175880.6684 150993.3583 223933.8598 100830.4136 54779.92191 1.398518337 2.6053845 2.148295584 1.101661804 2.362375258 3.210677603 2.756363154 4.087882056 1.840645443 1 15.74135959 -5.99741688 24.98724193 2.783555763 1.873706036 0.128882884 0.859488165 130.4090378 1261456.451 0.256137549 0.288767387 1.01E-06 5.99741688 -0.909849727 DRQS(ph)PLHGNHITISHTQATGSR ddPTM_HeLa_A485_30min_R1 3 DRQSPLHGNHITISHTQATGSR 22 1 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DRQS(1)PLHGNHITISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR ;; 223.34 3.34E-36 5383800000 1290710 1559920 1410970 1068194 1956770 1376070 1840530 2318750 1524650 1641610 TRUE FALSE FALSE 1577823.987 1742339.075 1932946.518 1126546.733 1761947.108 1448118.897 1447285.73 1750072.927 1830633.27 1232386.839 1.280299284 1.413792342 1.568457612 0.91411779 1.429702958 1.175052226 1.174376165 1.420067849 1.485437212 1 20.23302375 DRQS(ph)PLHGNHITISHTQATGSR ddPTM_HeLa_A486_30min_R1 4 DRQSPLHGNHITISHTQATGSR 22 1 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DRQS(1)PLHGNHITISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR ;;; 222.55 3.59E-36 5513540000 1429400 1401800 1139610 361438 1579710 1209050 1462540 1528160 1222890 1012190 TRUE FALSE FALSE 1329206.441 1290716.263 1580897.512 841445.9301 1381568.042 1059889.704 1096597.023 1180231.327 1328891.09 758731.0357 1.751880942 1.701151267 2.083607283 1.109017413 1.820893013 1.396924145 1.445304029 1.555533215 1.751465311 1 19.53322903 -11.96748863 0.151308546 5.94E-19 1.829461539 0.357208319 0.252563006 75.50513965 1.209075829 27.17676217 1.384156462 1.08E-12 11.96748863 1.829461539 DRRPS(ph)VDAPVTDVGFLR ddPTM_HeLa_A485_30min_R1 4 DRRPSVDAPVTDVGFLR 17 2 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8;G3V536;G3V3S3 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 DRRPS(1)VDAPVTDVGFLR;DRRPS(1)VDAPVTDVGFLR;DRRPS(1)VDAPVTDVGFLR;DRRPS(0.999)VDAPVT(0.001)DVGFLR ;;; 168.75 3.31E-12 6731280000 1472820 1826210 1606490 1394590 1878360 1766650 2123390 2222870 1534070 1806730 TRUE FALSE FALSE 1800443.728 2039769.374 2200797.503 1470772.92 1691343.883 1859149.062 1669710.38 1677707.647 1841943.778 1356345.461 1.32742268 1.503871566 1.622593628 1.084364539 1.24698606 1.370704673 1.231036213 1.2369324 1.358019642 1 20.37129325 -11.68031586 0.053714483 1.67E-08 1.989952086 0.384320406 0.136529023 329.429119 2.066029689 62.90496362 22.22640508 2.09E-12 11.68031586 1.989952069 DRRPS(ph)VDAPVTDVGFLR ddPTM_HeLa_A486_30min_R1 5 DRRPSVDAPVTDVGFLR 17 2 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8;G3V536;G3V3S3 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 DRRPS(1)VDAPVTDVGFLR;DRRPS(1)VDAPVTDVGFLR;DRRPS(1)VDAPVTDVGFLR;DRRPS(1)VDAPVTDVGFLR;DRRPS(1)VDAPVTDVGFLR ;;;; 183.63 8.60E-18 6275270000 2451630 2308050 1975510 706426 2780360 2160073 2295880 2449810 2023830 2860640 TRUE FALSE FALSE 2279783.397 2125151.712 2740480.378 1644595.429 2431621.323 1893585.155 1721426.541 1892041.742 2199257.214 2144317.124 1.063174552 0.991062231 1.278020096 0.766955321 1.133984006 0.883071414 0.802785428 0.882351645 1.025621252 1 21.03208685 -5.265797878 24.99662306 0.924437493 1.098783283 0.320449616 0.121629558 453.3361868 2599953.874 0.033502418 0.051648064 5.42E-06 5.265797878 0.17434579 DRS(ph)PHRS(ph)SPSDTRPK ddPTM_HeLa_A485_30min_R1 6 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 DRS(0.764)PHRS(0.633)S(0.58)PS(0.021)DT(0.001)RPK;DRS(1)PHRS(0.927)S(0.073)PSDTRPK;DRS(0.817)PHRS(0.581)S(0.522)PS(0.067)DT(0.013)RPK;DRS(0.999)PHRS(0.547)S(0.443)PS(0.01)DTRPK;DRS(0.961)PHRS(0.866)S(0.17)PS(0.003)DTRPK;DRS(0.916)PHRS(0.595)S(0.488)PS(0.001)DTRPK ;;;;; 133.21 8.14E-06 11331980000 1454105 2054440 1793990 786020 2850200 1674710 2380510 2361500 1968240 1622930 TRUE FALSE FALSE 1777565.641 2294688.887 2457661.555 828958.2823 2566424.08 1762395.226 1871894.592 1782338.422 2363247.714 1218363.419 1.458978178 1.883419061 2.017182654 0.680386713 2.106452016 1.446526709 1.536400849 1.462895549 1.939690307 1 20.2165131 -10.21796983 4.207061696 0.999721812 1.609678225 0.181100758 0.39198373 127893967.2 218.0118434 387321.6141 0.090471355 6.05E-11 10.21796983 0.609956413 DRS(ph)PHRS(ph)SPSDTRPK ddPTM_HeLa_A486_30min_R1 8 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 DRS(0.939)PHRS(0.918)S(0.141)PS(0.002)DTRPK;DRS(1)PHRS(0.797)S(0.197)PS(0.007)DTRPK;DRS(0.955)PHRS(0.56)S(0.475)PS(0.01)DTRPK;DRS(0.999)PHRS(0.38)S(0.329)PS(0.25)DT(0.043)RPK;DRS(0.891)PHRS(0.578)S(0.482)PS(0.049)DTRPK;DRS(0.932)PHRS(0.585)S(0.482)PS(0.001)DTRPK;DRS(0.858)PHRS(0.597)S(0.536)PS(0.008)DT(0.001)RPK;DRS(0.795)PHRS(0.612)S(0.558)PS(0.035)DTRPK ;;;;;;; 147.08 4.19E-08 9186241000 3728828 3860783 2789822.5 378364.9 4193117 2882842 3568907 3315210 3632665 1309857 TRUE FALSE FALSE 3467456.413 3554840.494 3870116.486 880852.6087 3667177.167 2527186.265 2675928.721 2560409.054 3947547.327 981860.2815 3.53151714 3.620515629 3.941616296 0.897126226 3.734927704 2.573875644 2.725366094 2.607712219 4.02047766 1 19.90515822 -10.88129353 2.613766798 0.006101204 3.031192463 0.326673564 0.890879874 5929428.748 3533001.347 36355649.85 0.219245817 1.31E-11 10.88129353 3.025091259 DRS(ph)PHRSS(ph)PSDTRPK ddPTM_HeLa_A485_30min_R1 1 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 DRS(0.999)PHRS(0.451)S(0.536)PS(0.014)DTRPK 95.957 0.00040333 503910000 363960 479290 431280 188920 712530 411180 609040 602970 502080 404980 TRUE FALSE FALSE 444921.6464 535338.7962 590828.4191 199240.2212 641588.0114 432708.749 478913.6286 455090.6621 602842.8506 304025.9391 1.463433178 1.760832638 1.943348718 0.655339547 2.110306815 1.423262601 1.575239369 1.496881034 1.982866503 1 18.21383489 -10.39278396 4.213381858 0.998358158 1.594110057 0.177586962 0.387907165 0.005673707 0.000817673 0.356111893 0.086154035 4.05E-11 10.39278396 0.595751899 DRS(ph)PIRGS(ph)PR ddPTM_HeLa_A485_30min_R1 3 DRSPIRGSPR 10 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 DRS(1)PIRGS(1)PR;DRS(1)PIRGS(1)PR;DRS(1)PIRGS(1)PR ;; 99.069 0.0067614 1139550000 1227710 1545710 1318660 1422880 1766020 1486500 1862430 2002550 1350140 1821650 TRUE FALSE FALSE 1500809.854 1726467.339 1806487.208 1500608.331 1590188.848 1564330.841 1464506.616 1511421.473 1621100.714 1367546.18 1.097447293 1.262456335 1.320969803 1.097299933 1.162804497 1.143896173 1.070901032 1.105206899 1.185408389 1 20.38315812 -5.287144402 24.90355733 1.115806632 1.230507679 0.361865374 0.071157539 755.4681328 731911.6278 0.019779236 0.029349066 5.16E-06 5.287144402 0.114701047 DRS(ph)PIRGS(ph)PR ddPTM_HeLa_A486_30min_R1 3 DRSPIRGSPR 10 2 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 DRS(1)PIRGS(1)PR;DRS(1)PIRGS(1)PR;DRS(1)PIRGS(1)PR ;; 85.006 0.016343 25368860000 2274300 2379670 1751830 915870 2525400 2298030 2720100 2704070 1863630 2799230 TRUE FALSE FALSE 2114883.314 2191096.283 2430185.492 2132191.646 2208640.784 2014522.423 2039502.21 2088412.29 2025170.949 2098284.588 1.007910617 1.044232177 1.158177258 1.016159418 1.052593531 0.960080646 0.971985507 0.995295063 0.965155518 1 21.00077893 -6.21730846 6.762923981 0.977827036 1.059006618 0.484488494 0.039805901 0.205043998 25.33627134 0.013611772 0.01349811 6.06E-07 6.21730846 0.081179582 DRS(ph)PLRR ddPTM_HeLa_A485_30min_R1 5 DRSPLRR 7 2 Q96PK6;Q96PK6-5;E9PB51;Q9BWF3;Q9BQ04 Q96PK6;E9PB51;Q9BQ04 RBM14;RBM4;RBM4B RNA-binding protein 14;RNA-binding protein 4;RNA-binding protein 4B 1 0 DRS(1)PLRR;DRS(1)PLRR;DRS(1)PLRR;DRS(1)PLRR;DRS(1)PLRR ;;;; 77.662 0.010396 1.67E+11 8256310 10734150 8029540 11112660 8637700 8836680 12848320 11401170 8787120 12688460 TRUE FALSE FALSE 10092897.68 11989415.47 11000000.98 11719716.48 7777700.259 9299354.901 10103171.47 8605015.181 10550614.38 9525460.436 1.059570584 1.258670439 1.154799924 1.230356953 0.816516987 0.976263034 1.060649145 0.903369999 1.107622509 1 23.1833574 -5.740417734 24.99968379 0.976677319 1.180261766 0.542491433 0.089240985 177.8100313 211457.0629 0.025364677 0.032711646 1.82E-06 5.740417734 0.203584447 DRS(ph)PLRR ddPTM_HeLa_A486_30min_R1 2 DRSPLRR 7 2 Q96PK6;Q96PK6-5;E9PB51;Q9BWF3;Q9BQ04 Q96PK6;E9PB51;Q9BQ04 RBM14;RBM4;RBM4B RNA-binding protein 14;RNA-binding protein 4;RNA-binding protein 4B 1 0 DRS(1)PLRR;DRS(1)PLRR ; 83.869 0.0066986 1.15E+11 5474200 3764500 3765300 1879810 3639300 5970700 4911000 4354300 4705600 5624400 TRUE FALSE FALSE 5090486.849 3466187.31 5223324.998 4376292.68 3182825.059 5234095.74 3682215.857 3362920.944 5113485.197 4216013.631 1.207417075 0.822148032 1.238925074 1.038016729 0.754937089 1.241479795 0.873388034 0.797654191 1.212872074 1 22.0074481 -5.533211314 24.99640392 0.970294078 1.075380072 0.066221403 0.180872709 617.4160936 1493637.07 0.051392645 0.066420057 2.93E-06 5.533211314 0.105085994 DRS(ph)PLRRS(ph)PPR ddPTM_HeLa_A485_30min_R1 9 DRSPLRRSPPR 11 3 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 2 0 DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR ;;;;;;;; 104.94 0.00044373 15270683000 153961.7 258552 245397 194834.1 379229 291977 350560 514506 231475 259351 TRUE FALSE FALSE 188209.949 288787.4073 336179.5621 205477.3935 341471.6292 307264.4642 275659.9922 388322.5968 277929.9093 194699.5687 0.966668546 1.483246261 1.72665797 1.055356182 1.753838652 1.57814661 1.415822305 1.99447076 1.427480868 1 17.57089016 -4.267872195 4.931323019 1.528054812 0.940284605 0.222866196 0.289089169 0.221605283 16.43530856 0.06831924 0.442748864 5.40E-05 4.267872195 -0.587770207 DRS(ph)PLRRS(ph)PPR ddPTM_HeLa_A486_30min_R1 7 DRSPLRRSPPR 11 3 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 2 0 DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR;DRS(1)PLRRS(1)PPR ;;;;;; 90.561 0.0015959 6668970600 212248.6 285518.2 460104.5 112058.6 551911 225731.4 248458.1 326195.3 254609.3 199429.8 TRUE FALSE FALSE 197371.0692 262892.698 638269.2844 260878.0839 482685.176 197882.9549 186291.2555 251927.751 276679.0391 149491.28 1.32028483 1.758582159 4.269608798 1.745105694 3.228851716 1.323709014 1.24616804 1.685233754 1.850803867 1 17.18970181 -6.285486689 24.72879395 1.453071497 2.485588729 0.289922591 0.815282936 948.5234878 975400.4183 0.289562117 0.255504236 5.18E-07 6.285486689 1.032517233 DRS(ph)PPKSPEKLPQSSSSESSPPSPQPTK ddPTM_HeLa_A485_30min_R1 1 DRSPPKSPEKLPQSSSSESSPPSPQPTK 28 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DRS(0.826)PPKS(0.054)PEKLPQS(0.029)S(0.029)S(0.029)S(0.029)ES(0.002)S(0.001)PPSPQPTK 88.241 0.016583 171020000 80941 112860 81768 128390 145280 140130 174950 333570 101810 198780 TRUE FALSE FALSE 98946.04621 126057.9952 112017.3859 135403.6206 130815.4131 147466.9901 137570.5033 251761.4345 122242.3331 149227.8043 0.66305369 0.844735308 0.750646881 0.907361877 0.876615546 0.988200495 0.921882514 1.687094679 0.81916593 1 17.18715684 -6.533217206 1.358115295 1.179265454 0.796366422 0.290704281 0.223677379 0.481327834 1.806645724 0.115722647 0.082924868 2.93E-07 6.533217206 -0.382899032 DRS(ph)PSRLDTFLK ddPTM_HeLa_A485_30min_R1 4 DRSPSRLDTFLK 12 2 Q66GS9 Q66GS9 CEP135 Centrosomal protein of 135 kDa 1 0 DRS(0.996)PS(0.004)RLDTFLK;DRS(0.989)PS(0.011)RLDTFLK;DRS(0.98)PS(0.02)RLDTFLK;DRS(0.94)PS(0.06)RLDTFLK ;;; 145.69 8.42E-08 826494000 728950 722920 545627 890120 991070 886850 1226100 1331310 735820 1174640 TRUE FALSE FALSE 891102.4127 807459.2054 747477.1327 938745.0017 892395.5909 933284.0947 964133.7187 1004804.135 883492.3247 881823.8656 1.010521996 0.915669486 0.847649017 1.064549326 1.011988477 1.058356585 1.093340469 1.139461262 1.001892055 1 19.750131 -5.28201034 24.37487641 1.058829652 0.9237191 0.532994509 0.054780021 418.0172374 495314.6066 0.015714247 0.023340479 5.22E-06 5.28201034 -0.135110551 DRS(ph)PSRLDTFLK ddPTM_HeLa_A486_30min_R1 4 DRSPSRLDTFLK 12 2 Q66GS9 Q66GS9 CEP135 Centrosomal protein of 135 kDa 1 0 DRS(0.996)PS(0.004)RLDTFLK;DRS(0.795)PS(0.205)RLDT(0.001)FLK;DRS(0.675)PS(0.314)RLDT(0.011)FLK;DRS(0.824)PS(0.111)RLDT(0.065)FLK ;;; 144.97 8.84E-08 1053917000 1401392 1470487 828620 658484 1584770 1480560 1871460 1814940 1061558 1763240 TRUE FALSE FALSE 1303161.658 1353960.255 1149483.855 1532984.03 1385993.369 1297903.56 1403200.914 1401717.782 1153574.702 1321713.227 0.985963998 1.0243979 0.869692329 1.159846174 1.048633955 0.981985754 1.061653076 1.060530948 0.872787439 1 20.33397776 -5.240853222 24.99008565 1.029546512 0.96645609 0.131289727 0.077551711 1823.311653 2213363.747 0.020827121 0.036023978 5.74E-06 5.240853222 -0.063090422 DRS(ph)SPPPGYIPDELHQVAR ddPTM_HeLa_A485_30min_R1 3 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR ;; 216.25 8.64E-35 6127300000 1029550 1527270 1279940 1147680 1620500 1387600 1683230 1823810 1238770 1563720 TRUE FALSE FALSE 1258569.846 1705870.941 1753443.069 1210374.852 1459157.33 1460252.59 1323594.16 1376517.738 1487379.776 1173913.382 1.072114744 1.453148901 1.493673294 1.031059762 1.242985515 1.243918514 1.127505811 1.172588846 1.267026851 1 20.16289453 -13.99999873 0.092910093 0.222505263 1.424945306 0.208357065 0.14023485 312.0356806 1.998897431 47.54747298 3.062892574 1.00E-14 13.99999873 1.202440043 DRS(ph)SPPPGYIPDELHQVAR ddPTM_HeLa_A486_30min_R1 6 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR;DRS(0.5)S(0.5)PPPGYIPDELHQVAR ;;;;; 227.25 3.27E-35 10666400000 1600800 1685230 1383400 609103 1922770 1620100 1903590 1885460 1412790 1898880 TRUE FALSE FALSE 1488592.187 1551686.237 1919089.529 1418022.566 1681598.257 1420228.534 1427291.648 1456181.917 1535251.775 1423388.088 1.04580908 1.090135747 1.348254594 0.996230457 1.181405318 0.997780258 1.002742442 1.023039275 1.078589731 1 20.44089764 -6.268910668 24.8843644 1.020764798 1.134451467 0.27755584 0.090264066 754.6615018 2513519.16 0.031307241 0.028156571 5.38E-07 6.268910668 0.113686668 DRS(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_HeLa_A485_30min_R1 4 DRSSSAPNVHINTIEPVNIDDLIR 24 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR ;;; 225.57 1.81E-38 1051160000 194994 287850 261020 191662 336193 272722 341804 419249 266753 284336 TRUE FALSE FALSE 238369.7426 321511.5535 357582.1599 202132.0097 302720.4445 287001.3022 268774.7831 316427.5254 320287.8803 213456.268 1.116714654 1.50621744 1.67520103 0.946948111 1.418184845 1.344543802 1.259156199 1.482399783 1.500484775 1 17.703581 -10.11172867 4.723184183 0.999976781 1.364182445 0.227088717 0.19977923 133428936.3 0.265363366 33693.71668 0.047689225 7.73E-11 10.11172867 0.364205664 DRS(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_HeLa_A486_30min_R1 4 DRSSSAPNVHINTIEPVNIDDLIR 24 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR ;;; 185.3 9.46E-21 540782000 123670 122552.8 104426.4 29256.1 151496 97816 132241 136054 98686.6 134250 TRUE FALSE FALSE 115001.3716 112841.2698 144863.0987 68109.67932 132493.959 85748.45644 99152.9031 105077.4742 107240.8339 100632.9262 1.142780758 1.121315598 1.439519889 0.676813066 1.316606444 0.852091455 0.985292855 1.044165943 1.065663476 1 16.61874289 -5.24307009 24.99928261 1.000835651 1.223216386 0.293055372 0.17227596 1107.07407 1506646.03 0.044030748 0.076086664 5.71E-06 5.24307009 0.222380735 DRSFS(ph)EHDLAQLR ddPTM_HeLa_A486_30min_R1 1 DRSFSEHDLAQLR 13 1 Q8WWL2-4;Q8WWL2-3;Q8WWL2-2;Q8WWL2 Q8WWL2-4 SPIRE2 Protein spire homolog 2 1 0 DRS(0.082)FS(0.918)EHDLAQLR 95.751 0.00019677 0 48516 50750 48786 16917 61339 44950 52757 50522 37707 57945 TRUE FALSE FALSE 45115.27894 46728.38517 67677.24573 39383.63094 53645.29066 39404.52602 39556.64059 39019.24349 40975.47312 43435.19484 1.038680248 1.075818477 1.558119999 0.906721636 1.23506504 0.9072027 0.910704804 0.898332415 0.943370308 1 15.40657689 -6.269182298 24.65908154 0.924241729 1.165770907 0.340760176 0.160418075 567.813091 1808324.565 0.055361821 0.049741242 5.38E-07 6.269182298 0.241529179 DRSPHRS(ph)S(ph)PSDTRPK ddPTM_HeLa_A485_30min_R1 3 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 DRS(0.302)PHRS(0.834)S(0.861)PS(0.003)DTRPK;DRS(0.081)PHRS(0.975)S(0.929)PS(0.014)DTRPK;DRS(0.552)PHRS(0.727)S(0.705)PS(0.016)DTRPK ;; 121.19 3.46E-05 960121000 256927 420215 329155 175251 567750 339800 433444 433387 386862 350472 TRUE FALSE FALSE 314079.5248 469355.4889 450923.1318 184824.5184 511222.8165 357591.4026 340835.1485 327098.1587 464501.6549 263105.7804 1.193738596 1.783904132 1.713847302 0.702472284 1.94303149 1.359116482 1.295430104 1.243219204 1.76545591 1 18.00528342 -10.61221602 3.08691729 0.971906128 1.442401986 0.12691606 0.349691357 175270157.8 202894072.5 40091646.44 0.088076595 2.44E-11 10.61221602 0.470495857 DRSPHRS(ph)S(ph)PSDTRPK ddPTM_HeLa_A486_30min_R1 1 DRSPHRSSPSDTRPK 15 3 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 DRS(0.459)PHRS(0.697)S(0.68)PS(0.162)DT(0.001)RPK 47.204 0.035675 1690300000 138000 129730 147900 35635 183040 163700 103880 128930 149340 102350 TRUE FALSE FALSE 128326.9126 119449.7223 205170.8409 82960.08089 160081.4164 143504.3584 77888.12527 99575.45352 162284.9114 76720.89381 1.672646215 1.556938617 2.674249878 1.08132318 2.086542641 1.870472973 1.015213997 1.29789225 2.115263566 1 16.22733191 -6.729378496 24.99316701 1.381916576 1.828435444 0.186683361 0.47593438 344.7404417 268743.1214 0.177095312 0.137166115 1.86E-07 6.729378496 0.446518868 DRSPLRR ddPTM_HeLa_A486_30min_R1 2 DRSPLRR 7 2 Q96PK6;Q96PK6-5;E9PB51;Q9BWF3;Q9BQ04 Q96PK6;E9PB51;Q9BQ04 RBM14;RBM4;RBM4B RNA-binding protein 14;RNA-binding protein 4;RNA-binding protein 4B 0 0 ; ; 84.568 0.0083694 0 117794 81575 79737 39487 83188 125702 114028 93017 101657 130603 FALSE FALSE TRUE 109537.2489 75110.69991 110613.3018 91927.73156 72753.78534 110194.1653 85496.98833 71839.05965 110468.7106 97899.15872 1.118878347 0.767225182 1.129869789 0.939004306 0.743150261 1.12558848 0.873316885 0.733806711 1.128392849 1 16.57900884 -4.204404037 22.00918591 0.933306273 1.118883738 0.115162415 0.150096636 34085.04951 13150980.27 0.035554846 46.59216507 6.25E-05 4.204404037 0.185577465 DRSPPKSPEKLPQSSSSESS(ph)PPS(ph)PQPTK ddPTM_HeLa_A486_30min_R1 1 DRSPPKSPEKLPQSSSSESSPPSPQPTK 28 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 DRS(0.062)PPKS(0.144)PEKLPQS(0.171)S(0.176)S(0.181)S(0.187)ES(0.209)S(0.217)PPS(0.652)PQPT(0.001)K 49.001 0.02281 125890000 38216 29237 8830.7 31394 24105 42750 56158 53829 22331 86830 TRUE FALSE FALSE 35537.25575 26920.15364 12250.18353 73086.81856 21081.52613 37475.93965 42106.67442 41573.31178 24266.66906 65087.20283 0.545994515 0.41360133 0.18821186 1.122906123 0.323896637 0.575780461 0.646927085 0.6387325 0.372833184 1 15.99008629 -11.18047149 2.395517463 2.242178268 0.541079623 0.250861414 0.240152422 17833428.2 4109648.609 120099544.5 0.058941416 6.60E-12 11.18047149 -1.701098645 DRSS(ph)PPPGYIPDELHQVAR ddPTM_HeLa_A485_30min_R1 1 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 DRS(0.389)S(0.611)PPPGYIPDELHQVAR 128.29 2.21E-06 1243000000 188800 255730 253520 199250 299620 238380 327020 360240 226170 283930 TRUE FALSE FALSE 230797.9086 285635.3989 347307.5978 210134.523 269788.7808 250861.2082 257149.5055 271890.5752 271560.2444 213151.4763 1.082788225 1.340058271 1.629393349 0.985845965 1.265713874 1.17691518 1.206416723 1.27557444 1.274024694 1 17.70151952 -13.08253007 0.277975831 2.17E-12 1.270318587 0.171360493 0.161324173 234.7188739 3.638021663 134.2823732 0.192797324 8.27E-14 13.08253007 1.270318587 DRSS(ph)SAPNVHINTIEPVNIDDLIR ddPTM_HeLa_A486_30min_R1 1 DRSSSAPNVHINTIEPVNIDDLIR 24 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 DRS(0.308)S(0.546)S(0.147)APNVHINTIEPVNIDDLIR 227.99 1.05E-38 157160000 33588 37821 29411 12916 44459 37801 39423 41776 23611 37747 TRUE FALSE FALSE 31233.65465 34823.92622 40799.72685 30069.10074 38882.53766 33137.49695 29558.94843 32264.51676 25657.62049 28294.90551 1.103861423 1.230748984 1.441946037 1.062703699 1.374188638 1.171147115 1.04467387 1.140294204 0.906792938 1 14.7882547 -6.949327382 1.247068552 0.989834357 1.246248824 0.439232544 0.117210633 0.449385198 1.342040873 0.083371312 0.040448425 1.12E-07 6.949327382 0.256414467 DRSWVIGS(ph)PEILR ddPTM_HeLa_A485_30min_R1 5 DRSWVIGSPEILR 13 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 DRSWVIGS(1)PEILR;DRSWVIGS(1)PEILR;DRS(0.003)WVIGS(0.997)PEILR;DRSWVIGS(1)PEILR;DRSWVIGS(1)PEILR ;;;; 157.57 7.22E-09 804804000 285391 430156 356188 276165 471242 422603 519034 610227 337027 386137 TRUE FALSE FALSE 348875.2434 480459.0023 487956.7634 291251.1947 424323.4918 444729.8396 408138.1458 460567.8715 404665.2275 289880.1522 1.203515455 1.657440148 1.683305186 1.004729687 1.463789392 1.534185201 1.407954779 1.588821683 1.395974248 1 18.14509703 -8.039851216 21.91397221 0.999999995 1.448982029 0.311605103 0.196136002 1816.009179 998613.898 0.188696128 0.048721131 9.12E-09 8.039851216 0.448982034 DRSWVIGS(ph)PEILR ddPTM_HeLa_A486_30min_R1 4 DRSWVIGSPEILR 13 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 DRSWVIGS(1)PEILR;DRSWVIGS(1)PEILR;DRSWVIGS(1)PEILR;DRSWVIGS(1)PEILR ;;; 137.89 3.30E-06 679392000 658190 558780 405233 257308 673600 540920 701320 681620 463331 760380 TRUE FALSE FALSE 612054.2799 514500.2378 562150.0701 599026.0276 589110.8069 474186.7901 525842.3182 526430.0057 503492.9041 569975.8988 1.073824843 0.902670164 0.986269896 1.050967293 1.033571434 0.831941826 0.922569392 0.923600466 0.883358235 1 19.12054139 -6.242807417 24.96754833 0.90816122 1.00454546 0.408957837 0.058150337 843.6399262 1130510.436 0.019036306 0.019004417 5.72E-07 6.242807417 0.09638424 DRT(ph)PPHLLYSDR ddPTM_HeLa_A485_30min_R1 5 DRTPPHLLYSDR 12 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 DRT(0.984)PPHLLY(0.001)S(0.015)DR;DRT(1)PPHLLYSDR;DRT(1)PPHLLYSDR;DRT(0.993)PPHLLYS(0.007)DR;DRT(0.98)PPHLLYS(0.02)DR ;;;; 125.89 4.56E-05 2105390000 408813 387889 309354 558957 452390 366819 468735 403467 360068 668325 TRUE FALSE FALSE 499752.0415 433249.2444 423796.9179 589491.4056 407348.4632 386025.0756 368585.938 304516.0856 432330.3449 501723.8771 0.996069879 0.86352128 0.844681581 1.174931935 0.811897703 0.769397458 0.734639021 0.606939593 0.861689795 1 18.93653407 -5.978701585 24.99908292 0.768937246 0.958290458 0.297936671 0.126357366 273.0504403 320492.2648 0.038506028 0.043658041 1.05E-06 5.978701585 0.189353211 DRT(ph)PPHLLYSDR ddPTM_HeLa_A486_30min_R1 3 DRTPPHLLYSDR 12 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 DRT(0.999)PPHLLYS(0.001)DR;DRT(1)PPHLLYSDR;DRT(0.984)PPHLLYS(0.016)DR ;; 121.51 0.00010684 2287410000 407117 475262 254216 162368 341140 419400 472300 442008 354941 538283 TRUE FALSE FALSE 378580.2007 437600.5082 352655.2433 378000.9096 298351.0402 367658.6921 354125.5445 341372.4274 385707.5717 403493.4332 0.938256164 1.084529443 0.874004914 0.936820475 0.739419816 0.911188788 0.877648842 0.84604209 0.95592032 1 18.62218567 -4.780440351 24.99717529 0.883366251 1.011392805 0.28301742 0.074451941 229.3228688 301691.3032 0.018485495 0.038577286 1.66E-05 4.780440351 0.128026553 DRT(ph)PPHLLYSDRDR ddPTM_HeLa_A485_30min_R1 5 DRTPPHLLYSDRDR 14 2 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR ;;;; 113.05 0.00021704 9522140000 472163 444793 441528 641008 694680 500567 758420 747310 429938 861880 TRUE FALSE FALSE 577194.0304 496807.6722 604867.5807 676024.6439 625515.22 526775.9141 596377.3713 564031.0508 516222.613 647029.1777 0.892068009 0.767828854 0.934838183 1.044813228 0.966749633 0.814145532 0.921716349 0.87172429 0.797835137 1 19.30347125 -6.205522778 0.005663237 1.796644672 3.95E-07 0.035186192 0.084060257 53552.99755 115.1783434 17976.53601 18558.66427 6.23E-07 6.205522778 -1.796644277 DRT(ph)PPHLLYSDRDR ddPTM_HeLa_A486_30min_R1 6 DRTPPHLLYSDRDR 14 2 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(1)PPHLLYSDRDR;DRT(0.997)PPHLLYS(0.003)DRDR;DRT(0.999)PPHLLYS(0.001)DRDR ;;;;; 164.53 6.41E-12 10582650000 873347 865336 602609 389115 934572 957543 1094580 1178710 683792 1155340 TRUE FALSE FALSE 812129.8853 796763.6239 835955.3432 905879.3848 817349.2652 839411.0802 820704.5067 910343.4641 743063.6411 866035.344 0.937756052 0.920012826 0.965267006 1.046007407 0.943782804 0.969257301 0.947657059 1.051162023 0.858006138 1 19.72406638 -4.852563504 5.633319568 0.97554985 0.929227235 0.101705823 0.052069229 0.409668386 19.86267687 0.012935681 0.027988443 1.40E-05 4.852563504 -0.046322615 DRT(ph)PPLLYR ddPTM_HeLa_A485_30min_R1 8 DRTPPLLYR 9 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR ;;;;;;; 120.53 0.00051797 23914140000 747543 789300 667362 1087323 1028551 859707 1241225 1215420 729145 1391695 TRUE FALSE FALSE 913831.3614 881601.769 914246.975 1146720.702 926144.851 904719.9292 976027.1389 917336.3393 875477.7134 1044771.049 0.874671405 0.843822931 0.875069209 1.097580856 0.886457231 0.865950421 0.934201938 0.878026186 0.837961307 1 19.99475539 DRT(ph)PPLLYR ddPTM_HeLa_A486_30min_R1 3 DRTPPLLYR 9 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 DRT(1)PPLLYR;DRT(1)PPLLYR;DRT(1)PPLLYR ;; 90.731 0.0040838 12532100000 301576 302586 190588 154299 298914 312058 404400 381120 226250 423670 TRUE FALSE FALSE 280437.0797 278607.9834 264388.7777 359215.8698 261421.4189 273559.4567 303214.8427 294347.2958 245861.5322 317580.2744 0.883043131 0.877283653 0.832510074 1.131102587 0.823166424 0.861386801 0.954765983 0.926843761 0.774171295 1 18.27676178 -6.46006206 0.005598858 1.813078371 3.69E-05 0.025290635 0.096379808 47927.09142 123.7376245 19781.31117 20280.8609 3.47E-07 6.46006206 -1.813041485 DRVHHEPQLSDK ddPTM_HeLa_A485_30min_R1 2 DRVHHEPQLSDK 12 1 O43852-12;O43852-13;O43852-14;O43852-9;O43852-7;O43852-11;O43852-8;O43852-10;O43852-5;O43852-6;O43852-2;O43852;O43852-4;O43852-3 O43852-12 CALU Calumenin 0 0 ; ; 95.018 0.005567 128342000 249960 244271 181612 287480 272860 261000 316340 250280 252783 423890 FALSE FALSE TRUE 305562.7396 272836.3686 248797.8363 303184.3045 245693.1003 274665.5564 248751.3747 188898.4376 303514.2294 318222.0241 0.960218704 0.85737739 0.781837263 0.952744567 0.772080754 0.86312554 0.781691259 0.593605795 0.953781343 1 18.27967416 -5.78332349 24.98671209 0.806563837 0.878267799 0.042606901 0.114650183 630.0027491 719317.2463 0.0346686 0.039342955 1.65E-06 5.78332349 0.071703962 DRVHHEPQLSDK ddPTM_HeLa_A486_30min_R1 1 DRVHHEPQLSDK 12 1 O43852-12;O43852-13;O43852-14;O43852-9;O43852-7;O43852-11;O43852-8;O43852-10;O43852-5;O43852-6;O43852-2;O43852;O43852-4;O43852-3 O43852-12 CALU Calumenin 0 0 95.417 0.0054172 206060000 143470 142400 78310 43175 117330 141250 159900 143390 115390 176540 FALSE FALSE TRUE 133413.4939 131115.7054 108633.7292 100513.5819 102613.3773 123824.0111 119891.3288 110743.2272 125392.0981 132333.2349 1.008163172 0.990799518 0.820910403 0.759549043 0.775416526 0.935698513 0.905980488 0.836851206 0.947548046 1 17.01381591 -9.092120669 12.94959567 0.999999806 0.881410484 0.142851901 0.082272703 0 0 0.08699713 0.021099903 8.09E-10 9.092120669 -0.118589322 DRYDS(ph)DRYR ddPTM_HeLa_A485_30min_R1 2 DRYDSDRYR 9 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17;REV__F8VX11 EIF4B Eukaryotic translation initiation factor 4B 1 0 DRYDS(1)DRYR;DRYDS(1)DRYR ; 98.105 0.0015857 828590000 345550 402660 416220 348560 482600 414080 427240 438350 393780 401190 TRUE FALSE FALSE 422416.4054 449747.5843 570197.0984 367600.9502 434550.6495 435760.5885 335956.6838 330843.9752 472808.034 301180.7164 1.402534699 1.493281475 1.893205864 1.220532824 1.442823614 1.446840933 1.115465452 1.098489901 1.569848295 1 18.20026988 -6.148579739 0.982880241 1.209099564 1.553800348 0.293491684 0.212453246 0.707877407 1.46415112 0.117076626 0.119575643 7.10E-07 6.148579739 0.344700784 DRYDS(ph)DRYR ddPTM_HeLa_A486_30min_R1 1 DRYDSDRYR 9 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17;REV__F8VX11 EIF4B Eukaryotic translation initiation factor 4B 1 0 DRYDS(1)DRYR 120.57 0.00030783 424650000 179770 176450 177290 79038 242640 176610 162080 175320 169360 203290 TRUE FALSE FALSE 167169.0513 162467.4594 245941.436 184004.4584 212205.8287 154821.6538 121525.8697 135403.4632 184040.2612 152384.8608 1.097018762 1.066165356 1.613949277 1.207498287 1.392565033 1.015991044 0.797493065 0.888562437 1.207733237 1 17.21736005 -6.378374977 5.575867771 0.957302334 1.277836646 0.413925351 0.174421013 0.230779037 9.716734159 0.064018318 0.056148305 4.18E-07 6.378374977 0.320534312 DRYDSDRYR ddPTM_HeLa_A485_30min_R1 7 DRYDSDRYR 9 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17;REV__F8VX11 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;;;;; ;;;;;; 162.36 1.01E-05 5330063000 924335.9 1458330 1124455.1 732047.6 1680174 1429537 1740988 2179106 1085270 1037962.5 FALSE FALSE TRUE 1129951.232 1628869.008 1540437.834 772037.5067 1512889.977 1504385.347 1369011.691 1644676.837 1303073.734 779217.551 1.450110089 2.090390553 1.97690341 0.990785572 1.941550181 1.93063586 1.756905616 2.110677351 1.672284887 1 19.57166665 DRYDSDRYR ddPTM_HeLa_A486_30min_R1 6 DRYDSDRYR 9 2 E7EX17;P23588-2;P23588;F8VX11 E7EX17;REV__F8VX11 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;;;; ;;;;; 178.84 3.28E-08 3090754000 1048303 916591 775384 351448 1293634 908860 1097061 1111458 656333 1043117 FALSE FALSE TRUE 974822.3731 843956.991 1075633.45 818188.7052 1131374.361 796734.0938 822564.7343 858403.2764 713224.4729 781913.7136 1.246713488 1.079347985 1.375642135 1.046392576 1.446929938 1.018953984 1.051989139 1.097823534 0.912152403 1 19.57664989 -6.391667549 21.2214893 1.024496404 1.227650261 0.459928383 0.120243495 4.70959733 764.4569536 0.0394443 0.03478653 4.06E-07 6.391667549 0.203153857 DRYS(ph)AGKR ddPTM_HeLa_A485_30min_R1 1 DRYSAGKR 8 2 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 DRYS(1)AGKR 64.688 0.017302 462010000 432680 360540 152430 506290 207440 434330 402330 588380 295340 565740 TRUE FALSE FALSE 528928.1733 402702.0167 208820.2001 533947.3407 186786.5452 457070.8472 316368.9088 444078.8825 354612.029 424711.4297 1.245382479 0.948177959 0.49167549 1.257200309 0.43979637 1.076191539 0.744903213 1.04560144 0.834948165 1 18.69612341 -9.877936767 19.87912307 1 0.88985815 0.01212159 0.266241843 0 0 0.239475049 0.058081231 1.32E-10 9.877936767 -0.110141849 DRYS(ph)AGKR ddPTM_HeLa_A486_30min_R1 1 DRYSAGKR 8 2 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 DRYS(1)AGKR 60.641 0.023274 183150000 309450 145970 210350 162650 122070 575080 260350 237730 379120 460390 TRUE FALSE FALSE 287759.153 134402.8056 291803.1534 378657.4199 106758.8423 504132.4766 195207.6763 183604.0686 411982.4269 345105.3474 0.833829888 0.389454428 0.84554805 1.097222697 0.309351458 1.460807491 0.565646629 0.53202325 1.193787433 1 18.3966773 -1.924349507 0.113485712 1.070868049 3.35E-10 0.062868373 0.342824115 278.3926225 2.717334842 3.062954627 45.91630966 0.011902837 1.924349507 -1.070868049 DRYSAGK(ac)R ddPTM_HeLa_A486_30min_R1 1 DRYSAGKR 8 2 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 1 DRYSAGK(1)R 107.21 0.029461 16386000 8029.9 9916.5 8604.8 5215.2 12322 11273 10695 17967 14674 19259 FALSE TRUE FALSE 7467.045476 9130.680425 11936.809 12141.24916 10776.45986 9882.251875 8018.99788 13876.30632 15945.95413 14436.42104 0.51723661 0.632475348 0.826853759 0.841015174 0.746477249 0.684536136 0.555469936 0.961201275 1.104564219 1 13.81742551 -7.424215776 5.227634195 1.047150395 0.698754342 0.699578707 0.101579674 0.135041288 5.587604298 0.063992014 0.029283471 3.77E-08 7.424215776 -0.348396053 DS(ph)DGVDGFEAEGK ddPTM_HeLa_A486_30min_R1 2 DSDGVDGFEAEGK 13 0 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 DS(1)DGVDGFEAEGK;DS(1)DGVDGFEAEGK ; 283.82 9.57E-68 139500000 559460 647610 292370 363720 521500 692240 808000 720050 512850 865760 TRUE FALSE FALSE 520244.7431 596291.025 405583.4939 846758.5414 456088.6072 606838.467 605829.8538 556110.3336 557304.2509 648968.0608 0.801649225 0.91882954 0.624966803 1.30477691 0.70279053 0.935082177 0.933527997 0.856914796 0.858754513 1 19.30778795 -7.236600323 0.015223164 1.812834108 2.78E-06 0.040622695 0.170756994 1963.912135 28.40399601 1676.802774 1699.443493 5.80E-08 7.236600323 -1.812831324 DS(ph)DGVDGFEAEGKK ddPTM_HeLa_A485_30min_R1 2 DSDGVDGFEAEGKK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 DS(1)DGVDGFEAEGKK;DS(1)DGVDGFEAEGKK ; 102.58 0.00030295 274960000 350520 185470 125404 818970 288940 201490 453020 279730 186723 1020460 TRUE FALSE FALSE 428491.9647 207159.1031 171796.1581 863708.2574 260172.1191 212039.7048 356228.5762 211125.7789 224196.5934 766078.1022 0.559331958 0.270415122 0.224254104 1.127441517 0.339615658 0.276786015 0.465002948 0.275593022 0.292655008 1 19.54713196 -10.56765139 5.073591888 1.003677982 0.42565866 0.314733078 0.25423536 0.010793986 0.000919814 0.251212124 0.06065271 2.71E-11 10.56765139 -0.578019322 DS(ph)DGVDGFEAEGKK ddPTM_HeLa_A486_30min_R1 3 DSDGVDGFEAEGKK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 DS(1)DGVDGFEAEGKK;DS(1)DGVDGFEAEGKK;DS(1)DGVDGFEAEGKK ;; 194.37 2.36E-18 729380000 1219470 1404280 453130 1076440 1033560 1851170 2474730 2113770 1076370 2764450 TRUE FALSE FALSE 1133991.45 1292999.739 628594.0712 2506006.72 903921.2672 1622791.467 1855526.379 1632510.714 1169670.618 2072213.726 0.547236724 0.62397026 0.303344227 1.20933796 0.436210443 0.783119736 0.895431951 0.787810009 0.564454623 1 20.98274138 -3.32992756 0.129822104 1.015576673 1.58E-23 0.169826128 0.236610505 85.84704582 1.387741197 1.593976554 15.16801615 0.000467813 3.32992756 -1.015576673 DS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_HeLa_A485_30min_R1 1 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DS(1)FDDRGPSLNPVLDYDHGSR 116.72 2.54E-05 199650000 15632 25164 25718 5307.4 27879 19088 31974 26860 11992 16677 TRUE FALSE FALSE 19109.28447 28106.7109 35232.15842 5597.329823 25103.26887 20087.41816 25142.4937 20272.54289 14398.6844 12519.73082 1.526333493 2.244993228 2.814130665 0.447080684 2.005096534 1.604460867 2.008229575 1.619247505 1.150079392 1 13.61191592 -8.539515019 0.151360325 0.433864823 2.295233932 0.175323182 0.581531327 19.74433719 1.403807093 10.32460233 5.130959205 2.89E-09 8.539515019 1.86136911 DS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_HeLa_A486_30min_R1 1 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DS(0.999)FDDRGPS(0.001)LNPVLDYDHGSR 81.341 0.0016357 18554000 31940 23517 20344 1760.7 27567 18583 24355 18257 19651 12922 TRUE FALSE FALSE 29701.17094 21653.42727 28221.74163 4098.998581 24109.28981 16290.4184 18261.1214 14100.27965 21354.3645 9686.247092 3.066323898 2.235481613 2.913588861 0.423177165 2.489022795 1.681809089 1.885262809 1.455701007 2.204606624 1 13.24172209 -5.173361729 24.99999995 1.663636601 2.68817182 0.441151392 0.586899598 71.07335714 20171.57444 0.148843491 0.257804477 6.71E-06 5.173361729 1.024535219 DS(ph)GDENEPIQER ddPTM_HeLa_A485_30min_R1 2 DSGDENEPIQER 12 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 DS(1)GDENEPIQER;DS(1)GDENEPIQER ; 176.56 3.43E-11 602540000 300350 322680 199550 312050 216961 254801 311680 275545 183959 349120 TRUE FALSE FALSE 367161.8213 360414.6191 273371.849 329096.5013 195359.601 268141.9864 245087.0218 207967.1567 220877.8839 262090.8091 1.400895448 1.37515169 1.043042486 1.255658306 0.745388981 1.023088094 0.935122535 0.793492749 0.842753261 1 17.99970724 -4.924648721 0.761306335 0.878098807 1.524868632 0.687398532 0.12356429 0.690057508 0.55325879 0.053120661 0.328093352 1.19E-05 4.924648721 0.646769825 DS(ph)GDENEPIQER ddPTM_HeLa_A486_30min_R1 1 DSGDENEPIQER 12 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 DS(1)GDENEPIQER 252.46 3.60E-33 182820000 164670 180360 103170 68298 122380 132810 174580 143010 118760 259480 TRUE FALSE FALSE 153127.4834 166067.6167 143120.187 159001.1956 107029.9593 116425.2525 130898.2375 110449.7449 129054.2124 194504.5191 0.787269541 0.853798244 0.735819341 0.817467874 0.550269782 0.598573509 0.672983014 0.567851819 0.663502386 1 17.56944415 -5.74035325 24.99811089 0.649947482 0.798048811 0.177666184 0.12249065 324.9593403 385245.3356 0.033711904 0.043476954 1.82E-06 5.74035325 0.148101329 DS(ph)GRLSPDLSVCGQPR ddPTM_HeLa_A486_30min_R1 1 DSGRLSPDLSVCGQPR 16 1 Q8TF76-2;Q8TF76 Q8TF76-2 GSG2 Serine/threonine-protein kinase haspin 1 0 DS(0.826)GRLS(0.174)PDLSVCGQPR 110.97 7.27E-05 0 93132 117820 70425 36030 107780 85842 114490 113470 94194 108940 TRUE FALSE FALSE 86603.92773 108483.5141 97695.44605 83879.66086 94261.22739 75251.68682 85843.39105 87635.35803 102358.8118 81660.71492 1.060533548 1.328466377 1.196357957 1.027172747 1.154303235 0.921516385 1.051220175 1.073164227 1.253464556 1 16.31735458 -5.210371625 7.469842999 1.068503401 1.209321016 0.236712683 0.103137096 0.375806892 48.50830443 0.027573013 0.047788707 6.16E-06 5.210371625 0.140817615 DS(ph)GSDGEDDVNEQHSGSDTGSVER ddPTM_HeLa_A485_30min_R1 1 DSGSDGEDDVNEQHSGSDTGSVER 24 0 Q96ST2;Q96ST2-3;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 1 0 DS(0.5)GS(0.5)DGEDDVNEQHSGSDTGSVER 150.62 1.59E-09 128320000 24893 32892 33411 26237 34088 32044 42572 38500 30733 46734 TRUE FALSE FALSE 30430.36197 36738.43328 45771.11925 27670.26087 30694.07903 33721.77429 33476.14442 29057.81463 36900.8312 35084.07388 0.86735543 1.047154142 1.304612441 0.788684375 0.874872147 0.961170428 0.954169249 0.828233766 1.051782964 1 15.09852866 -5.290955044 24.9993828 0.916466032 1.070452225 0.23782436 0.122952808 959.1138963 812354.8947 0.034674159 0.051438009 5.12E-06 5.290955044 0.153986193 DS(ph)HSPDLQLPTPEVIPSSGSK ddPTM_HeLa_A485_30min_R1 1 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 DS(0.538)HS(0.462)PDLQLPTPEVIPSSGSK 96.679 0.00048582 371840000 351690 290890 328120 477520 349730 347420 470380 359300 356420 677080 TRUE FALSE FALSE 429922.2272 324907.0551 449505.2422 503605.7085 314909.6532 365610.374 369879.4703 271181.1116 427950.2247 508296.4167 0.845810069 0.639207841 0.884336831 0.990771707 0.619539392 0.719285759 0.727684591 0.533509784 0.841930438 1 18.95531053 -3.923705769 19.05956489 0.759674811 3.297054725 0.014260555 0.148803251 1021.106234 263619.194 0.035777602 3672.766411 0.000119205 3.923705769 2.537379914 DS(ph)HSPDLQLPTPEVIPSSGSK ddPTM_HeLa_A486_30min_R1 2 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 DS(0.522)HS(0.478)PDLQLPTPEVIPSSGSK;DS(0.5)HS(0.5)PDLQLPTPEVIPSSGSK ; 194.19 5.47E-20 809420000 754290 881540 549910 289670 746270 918950 1003000 915340 729130 1002470 TRUE FALSE FALSE 701418.1662 811683.5599 762849.8791 674366.3991 652665.8579 805579.2922 752038.7913 706937.0637 792331.5755 751444.987 0.933425837 1.08016365 1.015177281 0.897426173 0.868547757 1.072040277 1.000790217 0.940770217 1.054410621 1 19.51930796 -6.297365168 24.99676464 1.009099625 0.965388161 0.147105878 0.064425335 1643.365244 1143430.33 0.024580032 0.021677984 5.04E-07 6.297365168 -0.043711464 DS(ph)KSSPHPKQPR ddPTM_HeLa_A485_30min_R1 1 DSKSSPHPKQPR 12 2 Q69YN2-3;Q69YN2 Q69YN2-3 CWF19L1 CWF19-like protein 1 1 0 DS(0.333)KS(0.333)S(0.333)PHPKQPR 48.704 0.024658 41373000 21467 38262 15616 26270 29274 55801 69653 152060 20612 26999 TRUE FALSE FALSE 26242.26009 42736.40806 21393.00824 27705.06358 26359.37777 58722.65408 54771.06754 114767.0466 24748.63934 20268.64618 1.2947219 2.108498401 1.055472973 1.366892655 1.300500169 2.897216398 2.702255841 5.662294638 1.221030705 1 14.30696211 -6.279290103 7.835441219 2.991116334 1.438776118 0.194186231 1.223329613 0.265083079 91.76946439 0.409639504 0.371212068 5.26E-07 6.279290103 -1.552340216 DS(ph)LGAYASQDANEQGQDLGKR ddPTM_HeLa_A485_30min_R1 1 DSLGAYASQDANEQGQDLGKR 21 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DS(1)LGAYASQDANEQGQDLGKR 114.9 3.22E-05 843870000 44293 33962 20981 45499 44768 28868 50168 37688 36250 63690 TRUE FALSE FALSE 54145.82504 37933.56047 28742.74499 47984.49516 40310.74073 30379.48384 39449.19697 28444.95891 43525.0425 47813.25513 1.132443815 0.793369127 0.601145957 1.003581434 0.843087144 0.635377862 0.825068213 0.594917849 0.910313309 1 15.54512301 -6.022567602 24.50064142 0.766415704 0.864550297 0.042835432 0.170539113 1781.308445 1933884.794 0.055004051 0.055446111 9.49E-07 6.022567602 0.098134593 DS(ph)LGTYSSR ddPTM_HeLa_A485_30min_R1 1 DSLGTYSSR 9 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DS(0.999)LGT(0.001)YSSR 130.63 0.00023941 425490000 294450 345410 400900 314410 390140 312730 339570 353670 335330 359510 TRUE FALSE FALSE 359949.3867 385802.6948 549209.5928 331585.4222 351296.2917 329104.0592 267018.0955 266931.878 402627.6552 269890.7733 1.33368541 1.429477155 2.034932822 1.228591175 1.30162394 1.219397222 0.989356147 0.989036693 1.491817042 1 18.04201613 -5.491406581 24.72563326 1.168258943 1.590607389 0.430153457 0.225150179 562.4201593 441856.6875 0.064071853 0.094914222 3.23E-06 5.491406581 0.422348446 DS(ph)LSPVLHPSDLILTR ddPTM_HeLa_A485_30min_R1 1 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 DS(0.576)LS(0.424)PVLHPSDLILTR 92.31 0.00068179 57286000 70419 114050 114950 32618 155230 71787 106780 111940 96374 89017 TRUE FALSE FALSE 86083.46361 127387.1554 157474.7885 34399.83875 139774.7562 75545.65632 83965.58069 84486.53948 115715.3778 66826.70014 1.288159724 1.906231419 2.356465128 0.514761894 2.091600451 1.130471146 1.256467557 1.264263226 1.73157402 1 16.02813702 -5.238828019 24.99880869 1.321258914 1.855879893 0.237065197 0.462028504 1214.700438 1342954.549 0.119882138 0.207448972 5.77E-06 5.238828019 0.534620979 DS(ph)LSPVLHPSDLILTR ddPTM_HeLa_A486_30min_R1 2 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 DS(0.571)LS(0.429)PVLHPSDLILTR;DS(0.561)LS(0.439)PVLHPSDLILTR ; 83.213 0.001876 112603000 176953 200352 187161 11424 246467 148744 177798 173337 182909 74906 TRUE FALSE FALSE 164549.5085 184475.3779 259634.7515 26595.64934 215552.8106 130393.4776 133311.0598 133871.949 198763.6994 56149.05004 2.930584014 3.285458573 4.624027501 0.473661608 3.838939581 2.322273974 2.374235356 2.384224647 3.539929869 1 15.77697399 -10.22970646 0.245382713 1.75E-32 3.144759887 0.203898731 1.066613087 32.18362555 1.668300064 27.38685132 1.832477803 5.89E-11 10.22970646 3.144759887 DS(ph)PGIPPSAGAHQLFR ddPTM_HeLa_A485_30min_R1 1 DSPGIPPSAGAHQLFR 16 0 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 0 DS(1)PGIPPSAGAHQLFR 78.794 0.0034168 192810000 313480 295820 260420 335160 337570 296910 364400 292490 254790 484950 TRUE FALSE FALSE 383212.5445 330413.5757 356760.195 353468.9421 303960.3455 312455.7485 286542.9631 220756.3689 305924.0159 364060.8898 1.052605636 0.907577784 0.979946501 0.970906109 0.83491623 0.858251345 0.787074281 0.606372107 0.840310026 1 18.47382024 -5.954041712 1.427445298 0.783591709 0.980012161 0.356323745 0.098473463 0.397169368 1.671919841 0.039240341 0.045771627 1.11E-06 5.954041712 0.196420452 DS(ph)PGIPPSAGAHQLFR ddPTM_HeLa_A486_30min_R1 1 DSPGIPPSAGAHQLFR 16 0 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 0 DS(1)PGIPPSAGAHQLFR 83.292 0.0018485 220030000 254450 238820 149770 42210 180970 240010 260530 218250 226090 260520 TRUE FALSE FALSE 236614.369 219895.0334 207764.955 98267.01318 158271.0551 210400.0064 195342.6384 168559.2394 245687.6632 195284.0963 1.211641775 1.126026326 1.063911291 0.503200286 0.810465666 1.077404717 1.000299779 0.863148831 1.258103798 1 17.57521494 -5.00926063 24.68360721 0.917550003 1.15036787 0.211047945 0.185912661 591.2793519 1576033.19 0.051865962 0.099455522 9.79E-06 5.00926063 0.232817867 DS(ph)PGIPPSANAHQLFR ddPTM_HeLa_A485_30min_R1 4 DSPGIPPSANAHQLFR 16 0 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 DS(1)PGIPPSANAHQLFR;DS(1)PGIPPSANAHQLFR;DS(1)PGIPPSANAHQLFR;DS(1)PGIPPSANAHQLFR ;;; 140.16 1.38E-06 948040000 1085270 1264100 1107310 1046200 1168800 1069570 1292140 1065190 994990 1456650 TRUE FALSE FALSE 1326684.567 1411925.499 1516950.048 1103351.257 1052430.168 1125571.031 1016063.733 803950.4823 1194675.366 1093533.963 1.21320838 1.291158343 1.387199758 1.008977585 0.962411963 1.029296821 0.929156083 0.735185655 1.092490409 1 20.0605666 -5.36700779 4.854309018 0.950403223 1.295288549 0.715819315 0.095966622 0.116458485 4.286820671 0.027793839 0.041958845 4.30E-06 5.36700779 0.344885326 DS(ph)PGIPPSANAHQLFR ddPTM_HeLa_A486_30min_R1 4 DSPGIPPSANAHQLFR 16 0 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 DS(1)PGIPPSANAHQLFR;DS(1)PGIPPSANAHQLFR;DS(1)PGIPPSANAHQLFR;DS(1)PGIPPSANAHQLFR ;;; 145.88 5.43E-08 1210920000 1110030 1216640 711900 110993 870110 1007610 1107020 946460 1027160 1085050 TRUE FALSE FALSE 1032222.629 1120229.015 987566.7453 258397.3133 760972.6903 883301.3228 830031.8871 730971.7191 1116195.056 813346.4175 1.269105767 1.3773086 1.214201875 0.317696504 0.935607109 1.086008746 1.020514592 0.898721262 1.372348893 1 19.63351042 -5.017399447 24.90747857 0.937132364 1.316344347 0.288905057 0.247711362 841.5581126 1204702.315 0.06855591 0.122290688 9.61E-06 5.017399447 0.379211983 DS(ph)PRPGKPDER ddPTM_HeLa_A486_30min_R1 1 DSPRPGKPDER 11 2 K7EJD2;A0A0A0MR03;Q9Y5B0;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 K7EJD2;Q9Y5B0-4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 DS(1)PRPGKPDER 85.163 0.0027253 303870000 385310 382270 199980 180890 311820 425310 477990 439990 301130 621520 TRUE FALSE FALSE 358301.7587 351977.533 277417.6117 421121.0617 272708.628 372839.5764 358391.8463 339813.8819 327232.1909 465887.3466 0.769073814 0.755499233 0.595460713 0.903911782 0.585353155 0.800278392 0.769267182 0.729390666 0.7023848 1 18.82962162 -10.13463571 3.52003848 1.000237361 0.734441774 0.446908882 0.088603873 35124203.39 57666543.29 95412.29417 0.020523481 7.33E-11 10.13463571 -0.265795586 DS(ph)PYQSR ddPTM_HeLa_A486_30min_R1 2 DSPYQSR 7 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 DS(1)PYQSR;DS(1)PYQSR ; 128.86 0.0008068 0 449540 340140 290830 148068 332570 461930 393980 331450 386900 574330 TRUE FALSE FALSE 418029.5674 313186.0676 403447.1647 344709.7869 290855.9695 404941.7732 295402.0369 255986.0705 420436.8035 430514.0297 0.971001033 0.727470061 0.937128959 0.800693504 0.675601605 0.940600643 0.686161232 0.594605641 0.976592572 1 18.71570073 -5.493548316 22.96282735 0.787197632 0.864341109 0.026455166 0.141368162 810.7883851 634764.4642 0.038365527 0.056749815 3.21E-06 5.493548316 0.077143477 DS(ph)QDASAEQSDHDDEVASLASASGGFGTK ddPTM_HeLa_A486_30min_R1 1 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 DS(0.308)QDAS(0.308)AEQS(0.308)DHDDEVAS(0.075)LAS(0.001)ASGGFGTK 62.683 0.0092885 135520000 19877 18468 13983 5228 22994 22143 23467 24080 15901 20132 TRUE FALSE FALSE 18483.72494 17004.52842 19397.59208 12171.04821 20109.87811 19411.22179 17595.30839 18597.50966 17279.31148 15090.81616 1.224832689 1.126813039 1.285390523 0.806520209 1.33259049 1.286293702 1.16596135 1.232372687 1.145021667 1 13.88138321 -8.030222391 20.38872193 0.999999992 1.180102765 0.133999929 0.138906855 615.863169 415478.2783 0.131786063 0.034026996 9.33E-09 8.030222391 0.180102774 DS(ph)QDGSSYR ddPTM_HeLa_A486_30min_R1 2 DSQDGSSYR 9 0 Q14847;C9J9W2;Q14847-3;Q14847-2;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 DS(0.988)QDGS(0.008)S(0.003)YR;DS(0.998)QDGS(0.002)SYR ; 139.32 0.00014546 947190000 788850 845450 555450 328010 630930 862080 909230 821060 741800 1092210 TRUE FALSE FALSE 733555.6886 778453.4629 770535.1155 763623.8567 551792.8762 755725.3346 681731.0371 634122.5616 806099.8213 818713.5069 0.895985815 0.950825235 0.94115354 0.932711932 0.673975538 0.923064452 0.832685709 0.774535361 0.984593285 1 19.64299917 DS(ph)QGTYSSR ddPTM_HeLa_A486_30min_R1 2 DSQGTYSSR 9 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DS(1)QGTYSSR;DS(0.994)QGT(0.006)YSSR ; 115.04 0.00070029 546040000 288040 467150 436920 168405 553750 557510 527020 488580 457490 398510 TRUE FALSE FALSE 267849.8834 430131.3327 606107.1251 392055.3507 484293.5115 488730.0845 395154.0218 377340.9996 497145.6016 298720.5021 0.896657181 1.439912325 2.0290108 1.312448754 1.621226223 1.636078143 1.322821898 1.263190832 1.66425002 1 18.18843673 -6.789361804 24.48211011 1.334498086 1.509481763 0.069537885 0.307162201 538.7482837 472363.2746 0.129314863 0.087207632 1.62E-07 6.789361804 0.174983676 DS(ph)RPLSPILHIVK ddPTM_HeLa_A485_30min_R1 1 DSRPLSPILHIVK 13 1 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 DS(0.5)RPLS(0.5)PILHIVK 95.347 0.00070668 139250000 148540 170680 126390 161120 162450 157670 205660 204520 141040 217850 TRUE FALSE FALSE 181582.2105 190639.5413 173146.9205 169921.5776 146275.9076 165925.3574 161719.0609 154361.1493 169345.4343 163544.0042 1.110295736 1.165677349 1.05871763 1.03899607 0.894413148 1.014560932 0.98884127 0.943850862 1.035473206 1 17.31931934 -5.149922101 2.060344378 0.979769718 1.13647985 0.670527994 0.042253086 0.177235497 1.462280442 0.012094826 0.026615602 7.08E-06 5.149922101 0.156710132 DS(ph)SFER ddPTM_HeLa_A485_30min_R1 1 DSSFER 6 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DS(0.63)S(0.37)FER 106.04 0.010078 542540000 728520 780720 607430 955470 885350 723690 982540 913290 674050 1171200 TRUE FALSE FALSE 890576.7606 872018.4126 832143.6343 1007664.907 797201.4453 761581.2894 772612.3024 689304.1955 809325.6522 879241.3943 1.012892212 0.991784984 0.946433641 1.146061722 0.906692349 0.866179975 0.878726033 0.78397605 0.920481744 1 19.74589978 -5.977139206 24.96142918 0.876870306 1.017655711 0.459072151 0.06932721 190.8505024 208386.3516 0.020767224 0.023546436 1.05E-06 5.977139206 0.140785404 DS(ph)SFER ddPTM_HeLa_A486_30min_R1 2 DSSFER 6 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DS(0.797)S(0.203)FER;DS(0.598)S(0.402)FER ; 107.66 0.0096581 1114070000 1674670 1737120 1216490 757700 1632380 1875980 2146380 1936270 1541310 2209710 TRUE FALSE FALSE 1557284.281 1599464.285 1687547.507 1763963.892 1427631.679 1644540.661 1609333.022 1495423.589 1674911.992 1656384.233 0.940170916 0.965636024 1.018814037 1.064948492 0.861896443 0.992849744 0.971594024 0.902824091 1.011185665 1 20.65960594 -5.738763457 24.99998259 0.954415801 0.996654112 0.124773354 0.052537811 512.0391154 564515.6863 0.015447923 0.019929092 1.82E-06 5.738763457 0.042238311 DS(ph)SFERR ddPTM_HeLa_A485_30min_R1 2 DSSFERR 7 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DS(0.5)S(0.5)FERR;DS(0.5)S(0.5)FERR ; 90.64 0.0039177 922190000 146601 216280 178327 114565 196024 216179 174349 276720 198653 151035 TRUE FALSE FALSE 179211.8867 241572.0646 244297.5781 120823.3959 176507.1623 227497.7982 137097.9118 208853.9861 238520.8349 113384.7541 1.580564231 2.130551559 2.154589301 1.065605308 1.556709839 2.006423174 1.209138856 1.841993554 2.103641154 1 16.79086714 -10.69980903 2.653929839 0.882999515 1.732725369 0.26900775 0.365238269 51031993.29 41956105.55 39884347.3 0.092440838 2.00E-11 10.69980903 0.849725855 DS(ph)SKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK ddPTM_HeLa_A485_30min_R1 1 DSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK 49 2 Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 0 DS(0.328)S(0.328)KGEDS(0.15)AEET(0.194)EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK 196.59 6.26E-27 876850000 466770 235860 128670 1031200 439390 479660 958970 858520 340020 1459600 TRUE FALSE FALSE 570601.3762 263441.7753 176270.3874 1087531.845 395642.7888 504774.2559 754078.2254 647966.6239 408258.8952 1095748.582 0.52074115 0.240421735 0.160867548 0.992501257 0.361070774 0.460666127 0.688185445 0.591346076 0.372584461 1 20.06348538 -14 0.15075475 2.761070042 0.338550863 0.319500333 0.224575807 166.9368735 1.489320086 88.64678758 1.141834404 1.00E-14 14 -2.422519179 DS(ph)SPSRDFLPALGSMRPPIIIHR ddPTM_HeLa_A485_30min_R1 1 DSSPSRDFLPALGSMRPPIIIHR 23 2 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 DS(0.51)S(0.415)PS(0.075)RDFLPALGSMRPPIIIHR 149.2 6.58E-10 102740000 46778 48672 37907 48703 49306 41436 59050 58099 42387 70706 TRUE FALSE FALSE 57183.60472 54363.76701 51930.37674 51363.52157 44396.92152 43605.52489 46433.48511 43850.12915 50893.6821 53080.29545 1.077303814 1.024179812 0.978336241 0.96765704 0.836410595 0.821501171 0.874778196 0.826109365 0.958805554 1 15.69588878 -5.19173143 1.413058363 0.875666323 1.057028702 0.543213376 0.05814068 0.312918964 1.190368205 0.018734229 0.048695963 6.43E-06 5.19173143 0.181362378 DS(ph)SPSRDFLPALGSMRPPIIIHR ddPTM_HeLa_A486_30min_R1 2 DSSPSRDFLPALGSMRPPIIIHR 23 2 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 DS(0.499)S(0.499)PS(0.002)RDFLPALGSMRPPIIIHR;DS(0.556)S(0.442)PS(0.002)RDFLPALGSMRPPIIIHR ; 181.64 4.34E-21 221140000 133845 138513 86861 69400 121129 132937 135727 125591 104275 154536 TRUE FALSE FALSE 124463.1567 127536.7254 120495.9054 161566.7073 105935.8713 116536.5845 101766.669 96996.67093 113313.641 115839.1797 1.074447842 1.100980909 1.040199919 1.394750098 0.914508127 1.006020457 0.87851683 0.837339069 0.978197888 1 16.82176377 TPVQYSQQQNS(ph)PQK ddPTM_HeLa_A485_30min_R1 4 TPVQYSQQQNSPQK 14 0 P46013 P46013 MKI67 Antigen KI-67 1 0 TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK ;;; 284.53 2.35E-49 1875520000 556880 563180 399328 840390 643650 460617 820210 985830 659040 1980350 TRUE FALSE FALSE 680756.0348 629039.002 547056.0446 886298.3777 579565.946 484734.1939 644965.433 744053.6468 791303.2829 1486685.191 0.457901941 0.423115133 0.367970333 0.5961574 0.389837707 0.326050328 0.433827845 0.50047828 0.53226015 1 20.50366775 -8.499250946 1.134932463 1.000432864 0.428166507 0.85959567 0.068284836 0.701705741 1.248325443 0.068102468 0.020948398 3.17E-09 8.499250946 -0.572266357 DS(ph)SQEYTDSTGIDLHEFLVNTLK ddPTM_HeLa_A486_30min_R1 3 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C2F9;Q15032-2;Q15032-4;Q15032;Q15032-3 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 0 DS(0.288)S(0.288)QEY(0.115)T(0.125)DS(0.086)T(0.097)GIDLHEFLVNTLK;DS(0.489)S(0.489)QEY(0.007)T(0.014)DSTGIDLHEFLVNTLK;DS(0.487)S(0.487)QEYT(0.026)DSTGIDLHEFLVNTLK ;; 184.4 5.82E-21 125166000 93758 102161 48658 57732.9 86901 141429 163612 186684 83746 175532 TRUE FALSE FALSE 87186.04837 94065.3903 67499.68071 134405.1089 76001.06626 123980.9279 122674.5471 144180.1285 91005.17071 131577.6447 0.662620528 0.714904044 0.513002652 1.021488941 0.577613822 0.942264381 0.932335788 1.095779825 0.691646145 1 17.00555487 -5.933186985 0.852276032 0.946690498 0.652153302 0.314617414 0.16173809 0.732477484 1.171657932 0.087240221 0.117506574 1.17E-06 5.933186985 -0.294537196 DS(ph)STSPGDYVLSVSENSR ddPTM_HeLa_A486_30min_R1 1 DSSTSPGDYVLSVSENSR 18 0 P46108-2;I3L297;P46108 P46108-2 CRK Adapter molecule crk 1 0 DS(0.499)S(0.499)T(0.001)SPGDYVLSVSENSR 124.43 1.30E-05 451150000 253920 357360 218030 104450 288710 316090 320080 294740 307740 359220 TRUE FALSE FALSE 236121.5192 329041.4921 302457.055 243164.8786 252497.2997 277094.0296 239992.5985 227634.1361 334415.151 269268.9739 0.876898351 1.221980711 1.123252526 0.903055689 0.937714049 1.029060369 0.891274606 0.845378258 1.241937183 1 18.03868848 -5.252047926 24.59857756 0.968695322 1.088837551 0.095588515 0.130224509 1036.930445 2715973.284 0.0343767 0.058543342 5.60E-06 5.252047926 0.120142229 DS(ph)SVEVR ddPTM_HeLa_A485_30min_R1 1 DSSVEVR 7 0 B0QYA6;B0QYA5;O15371-2;O15371-3;O15371 B0QYA6 EIF3D Eukaryotic translation initiation factor 3 subunit D 1 0 DS(0.692)S(0.308)VEVR 69.812 0.021303 573250000 320870 430270 310870 443610 480410 459400 576030 554160 331240 567330 TRUE FALSE FALSE 392246.4245 480586.3336 425873.7494 467843.291 432578.6936 483453.4736 452956.4848 418251.3911 397716.8297 425905.0719 0.92097148 1.128388379 0.999926456 1.098468466 1.01566927 1.135120254 1.063515123 0.982029609 0.933815669 1 18.70017238 -7.329647221 4.726090651 0.965337697 1.056305191 0.255499002 0.06218621 0.27358196 11.91535769 0.033353003 0.015484356 4.68E-08 7.329647221 0.090967494 DS(ph)TLIMQLLR ddPTM_HeLa_A486_30min_R1 1 DSTLIMQLLR 10 0 P31946-2;P31946;E7EX29;P63104;B0AZS6;Q04917;B7Z2E6;H0YB80;P63104-2;P31947-2;P31947;P61981;P27348;P62258;P62258-2;K7EM20 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAZ;YWHAH;SFN;YWHAG;YWHAQ;YWHAE "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 1 0 DS(0.964)T(0.036)LIMQLLR 73.435 0.011823 3964700 11889 13386 11223 9017.7 18569 13853 14511 14801 12059 15685 TRUE FALSE FALSE 11055.64249 12325.24461 15568.84616 20993.66133 16239.90287 12143.95771 10880.19432 11431.1354 13104.28383 11757.37391 0.940315634 1.04829911 1.324177175 1.785574015 1.381252565 1.032880114 0.925393239 0.972252434 1.114558738 1 13.52127824 -6.312761286 6.649637762 1.000252849 1.310749223 0.309238992 0.213766814 0.326509863 34.2723552 0.085637953 0.075837172 4.87E-07 6.312761286 0.310496373 DS(ph)YGGPPR ddPTM_HeLa_A485_30min_R1 1 DSYGGPPR 8 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DS(0.999)Y(0.001)GGPPR 79.986 0.0091845 405700000 532770 832580 690390 580300 746040 621620 653560 658980 557530 706050 TRUE FALSE FALSE 651282.8485 929942.9885 945793.9905 612000.3196 671761.6381 654167.062 513921.5669 497364.1218 669421.157 530044.7289 1.228731865 1.754461346 1.784366373 1.154620141 1.26736783 1.234173318 0.969581507 0.938343681 1.262952201 1 19.01575458 -5.31876699 7.695870409 1.119223718 1.605110055 0.590728325 0.179546652 0.198310103 24.13391991 0.052076959 0.077663363 4.80E-06 5.31876699 0.485886337 DS(ph)YGGPPR ddPTM_HeLa_A486_30min_R1 1 DSYGGPPR 8 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DS(1)YGGPPR 67.081 0.019461 387290000 822400 1163000 1085500 373840 1295800 778100 724510 836590 905360 898870 TRUE FALSE FALSE 764754.0069 1070839.644 1505834.671 870318.4128 1133268.681 682105.9331 543229.9349 646116.7196 983837.3338 673787.1013 1.135008381 1.589284868 2.234882009 1.291681617 1.681938818 1.01234638 0.8062338 0.958933049 1.460160534 1 19.36193328 -6.264990207 24.71417731 1.029886729 1.606346431 0.428616413 0.310423469 256.6910137 1786592.406 0.109560244 0.10047541 5.43E-07 6.264990207 0.576459701 DSAAPS(ph)PIPGADNLSADPVVSPPTSIPFK ddPTM_HeLa_A485_30min_R1 1 DSAAPSPIPGADNLSADPVVSPPTSIPFK 29 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 DS(0.012)AAPS(0.88)PIPGADNLS(0.108)ADPVVSPPTSIPFK 87.091 0.0014075 88423000 56231 60956 51976 80494 95960 73713 103150 103170 61957 110970 TRUE FALSE FALSE 68739.39196 68084.27395 71204.0853 84891.1834 86405.88546 77572.4987 81111.15984 77867.39574 74391.2016 83307.22125 0.825131254 0.817267374 0.854716845 1.019013504 1.037195626 0.931161759 0.973639003 0.934701633 0.892974228 1 16.34615394 -5.122450916 5.020499651 0.968070119 0.824546532 0.706086821 0.04091847 0.13046664 4.774404667 0.012116816 0.021685499 7.54E-06 5.122450916 -0.143523587 DSAAPS(ph)PIPGADNLSADPVVSPPTSIPFK ddPTM_HeLa_A486_30min_R1 3 DSAAPSPIPGADNLSADPVVSPPTSIPFK 29 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 DS(0.007)AAPS(0.931)PIPGADNLS(0.062)ADPVVSPPTSIPFK;DSAAPS(0.972)PIPGADNLS(0.028)ADPVVSPPTSIPFK;DSAAPS(0.797)PIPGADNLS(0.193)ADPVVS(0.01)PPTSIPFK ;; 116.22 8.47E-05 287910000 282898 279286 156581 103615 297112 290211 318707 323737 220163 350979 TRUE FALSE FALSE 263068.3111 257154.3602 217213.3566 241220.9564 259845.4425 254407.7175 238963.1377 250029.1522 239246.9061 263091.5739 0.999911579 0.977432901 0.825618827 0.916870703 0.987661591 0.966993027 0.908288829 0.950350285 0.909367421 1 18.00520552 DSAAPSPIPGADNLS(ph)ADPVVSPPTSIPFK ddPTM_HeLa_A485_30min_R1 1 DSAAPSPIPGADNLSADPVVSPPTSIPFK 29 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 DS(0.062)AAPS(0.431)PIPGADNLS(0.508)ADPVVSPPTSIPFK 77.925 0.002693 82027000 63869 68530 48826 88024 90460 76060 108210 102960 69580 119930 TRUE FALSE FALSE 78076.4387 76543.98737 66888.76922 92832.52823 81453.48478 80042.38399 85090.04951 77708.89856 83544.06777 90033.65815 0.867191674 0.850170802 0.742930706 1.031086931 0.90470038 0.889027344 0.94509155 0.863109421 0.927920397 1 16.45817682 -1.000000037 0.06251985 1.115984333 0.432919886 0.258438041 0.066528294 471.4475408 2.200813041 4.694990291 29.03714531 0.099999992 1.000000037 -0.683064447 DSAIPVES(ph)DT(ph)DDEGAPR ddPTM_HeLa_A485_30min_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 2 0 DSAIPVES(1)DT(1)DDEGAPR;DSAIPVES(1)DT(1)DDEGAPR ; 370.91 3.03E-119 1255200000 454020 535870 529380 503110 711980 547200 719030 732640 466220 685410 TRUE FALSE FALSE 555015.1826 598535.3351 725219.6913 530593.6254 641092.7713 575850.5459 565403.3666 552958.8913 559786.0776 514549.901 1.078642094 1.163221164 1.409425383 1.031180114 1.245929248 1.119134499 1.098830969 1.074645802 1.087914071 1 18.97295147 -7.11568414 0.665190636 1.017573036 1.195820319 0.266516206 0.096834817 0.985476442 0.85413942 0.089142984 0.048986321 7.66E-08 7.11568414 0.178247282 DSAIPVES(ph)DT(ph)DDEGAPR ddPTM_HeLa_A486_30min_R1 3 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 2 0 DSAIPVES(1)DT(1)DDEGAPR;DSAIPVES(1)DT(1)DDEGAPR;DSAIPVES(1)DT(1)DDEGAPR ;; 324.74 4.23E-102 313700000 560910 586240 479710 208705 683610 604850 656080 700660 503520 679470 TRUE FALSE FALSE 521593.1055 539784.2074 665466.5591 485875.7874 597865.2594 530229.7567 491921.8447 541135.0133 547165.519 509326.2894 1.024084396 1.059800404 1.306562361 0.953957802 1.17383546 1.041041406 0.965828497 1.062452547 1.074292709 1 18.95823066 -6.494821706 23.27139476 1.026931694 1.104495962 0.143658716 0.092047792 613.2375802 508639.5115 0.03193503 0.028083062 3.20E-07 6.494821706 0.077564268 DSAIPVES(ph)DTDDEGAPR ddPTM_HeLa_A486_30min_R1 1 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 DSAIPVES(0.571)DT(0.429)DDEGAPR 322.17 1.38E-102 0 92066 109570 82419 47124 127060 105220 117600 104690 80520 100620 TRUE FALSE FALSE 85612.64883 100887.2742 114333.8441 109707.0535 111122.95 92239.0262 88175.23615 80854.37237 87499.53843 75424.09707 1.13508351 1.337600025 1.51587952 1.454535855 1.473308324 1.222938421 1.169059221 1.071996557 1.160100576 1 16.2027379 -6.586509351 2.388402611 1.098953644 1.391043584 0.606199646 0.107354342 0.217171497 2.512119091 0.049688227 0.037073599 2.59E-07 6.586509351 0.29208994 DSAIPVESDT(ph)DDEGAPR ddPTM_HeLa_A485_30min_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 DSAIPVES(0.121)DT(0.879)DDEGAPR;DSAIPVES(0.49)DT(0.51)DDEGAPR ; 334.61 5.96E-91 2485400000 350090 409420 365270 331910 518400 416910 511400 528050 362500 462700 TRUE FALSE FALSE 427966.3127 457298.1075 500398.5732 350041.4029 466786.2758 438738.7629 402135.2122 398544.9095 435250.425 347357.4054 1.232063305 1.316505998 1.440587031 1.007726904 1.343821288 1.263075887 1.157698687 1.14736264 1.253033384 1 18.40606133 -13.99999999 0.109657555 0.20508875 1.382344951 0.335259639 0.109041686 192.7142801 1.403801245 34.17766094 1.372131365 1.00E-14 13.99999999 1.177256201 DSAIPVESDT(ph)DDEGAPR ddPTM_HeLa_A486_30min_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 DSAIPVES(0.407)DT(0.593)DDEGAPR;DSAIPVES(0.017)DT(0.983)DDEGAPR ; 462.71 9.97E-216 2034720000 494290 515760 375270 176287 536620 439600 513840 529690 378430 466920 TRUE FALSE FALSE 459642.8235 474889.2992 520584.5941 410405.0451 469312.1158 385366.6215 385271.7972 409091.1501 411232.6171 350000.1929 1.313264486 1.356825822 1.487383735 1.172585197 1.340891021 1.101046883 1.100775957 1.168831213 1.174949687 1 18.41699619 -5.958081907 1.202933386 1.114592613 1.371139702 0.619816681 0.086577902 0.312088848 0.95004268 0.037703965 0.045000259 1.10E-06 5.958081907 0.256547089 DSALAEAPEGLS(ph)PAPPAR ddPTM_HeLa_A485_30min_R1 2 DSALAEAPEGLSPAPPAR 18 0 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR ; 326.05 1.07E-90 1373610000 707560 854800 849960 789970 1110030 815270 1110820 1162580 833130 1104760 TRUE FALSE FALSE 864954.2809 954761.4242 1164395.574 833124.0608 999511.5156 857956.2766 873484.2324 877455.4321 1000331.549 829363.6636 1.042913162 1.151197558 1.40396261 1.004534075 1.205154698 1.034475363 1.053198097 1.057986346 1.206143448 1 19.66164532 DSALAEAPEGLS(ph)PAPPAR ddPTM_HeLa_A486_30min_R1 4 DSALAEAPEGLSPAPPAR 18 0 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR ;;; 409.66 4.21E-163 1758750000 1022500 1107990 860080 365434 1217260 1044250 1215520 1158050 919410 1113900 TRUE FALSE FALSE 950828.0302 1020188.837 1193126.01 850748.82 1064579.9 915421.0522 911384.0395 894387.2951 999105.1991 834972.1897 1.138754131 1.221823732 1.428941017 1.018894797 1.274988453 1.096349152 1.091514245 1.071158185 1.196573025 1 19.67136862 -6.092647974 1.081333385 1.090043592 1.236218556 0.232515766 0.108340154 0.758387821 1.876338324 0.05345315 0.056881747 8.08E-07 6.092647974 0.146174964 DSAPSTPT(ph)SPTEFLTPGLR ddPTM_HeLa_A486_30min_R1 2 DSAPSTPTSPTEFLTPGLR 19 0 Q9NZJ4-2;Q9NZJ4 Q9NZJ4-2 SACS Sacsin 1 0 DSAPSTPT(0.492)S(0.492)PT(0.016)EFLTPGLR;DSAPST(0.001)PT(0.491)S(0.491)PT(0.018)EFLTPGLR ; 133.86 1.28E-05 177208000 338580 329430 255700 128108 401270 353870 388240 364780 280770 369930 TRUE FALSE FALSE 314847.2904 303324.767 354713.8879 298241.8982 350938.9749 310213.1173 291098.2456 281727.5571 305107.3697 277297.1202 1.135414931 1.093861944 1.279183454 1.075531899 1.265570211 1.118702989 1.049770172 1.015977219 1.100290438 1 18.08107311 -6.638404785 3.80745566 1.042599613 1.1684974 0.456947868 0.065722338 0.209468764 5.721227802 0.025381226 0.019080572 2.30E-07 6.638404785 0.125897787 DSAPSTPTS(ph)PTEFLTPGLR ddPTM_HeLa_A485_30min_R1 1 DSAPSTPTSPTEFLTPGLR 19 0 Q9NZJ4-2;Q9NZJ4 Q9NZJ4-2 SACS Sacsin 1 0 DSAPSTPT(0.119)S(0.857)PT(0.024)EFLTPGLR 181.51 4.65E-18 103860000 157640 188770 164500 147930 223000 196330 227670 214880 166960 225390 TRUE FALSE FALSE 192706.4741 210845.0094 225355.3954 156011.0413 200797.337 206609.5352 179026.4446 162180.3431 200467.3406 169204.421 1.138897394 1.246096338 1.33185288 0.92202698 1.186714483 1.221064639 1.058048268 0.958487622 1.1847642 1 17.36840774 -6.006084342 0.299594641 1.005941943 1.26738196 0.194363776 0.114694849 4.645025854 0.77389988 0.160428069 0.426077755 9.86E-07 6.006084342 0.261440017 DSAS(ph)PSTSSFCLGVSVAASSHVPIQK ddPTM_HeLa_A486_30min_R1 1 DSASPSTSSFCLGVSVAASSHVPIQK 26 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 DS(0.072)AS(0.878)PS(0.018)T(0.018)S(0.007)S(0.007)FCLGVSVAASSHVPIQK 73.919 0.007142 107620000 62703 56770 49948 4357.3 80284 57901 78180 53228 56648 46722 TRUE FALSE FALSE 58307.8435 52271.33845 69289.20325 10144.01461 70214.0321 50757.76331 58618.5371 41109.14636 61558.29425 35022.50709 1.664867776 1.492507042 1.97841928 0.289642731 2.00482598 1.449289829 1.673739031 1.17379222 1.757678115 1 15.09599474 -10.36415187 3.475790524 0.99702675 1.485779474 0.092336979 0.467214025 153598880 214836131.4 4617899.287 0.110419149 4.32E-11 10.36415187 0.488752725 DSASFNPELLTHILDGS(ph)PEK ddPTM_HeLa_A485_30min_R1 3 DSASFNPELLTHILDGSPEK 20 0 K7ELT1;I3L2U4;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 DSASFNPELLTHILDGS(1)PEK;DSASFNPELLTHILDGS(1)PEK;DSASFNPELLTHILDGS(1)PEK ;; 191.69 1.64E-19 141899000 205254 152698 121928 296652 215608 169897 266701 239344 152813 411597 TRUE FALSE FALSE 250912.0442 170554.7028 167034.241 312857.3476 194141.3105 178792.5442 209718.1526 180644.5087 183481.1674 308993.4428 0.81203032 0.55196868 0.540575358 1.012504812 0.628302364 0.578628927 0.678713926 0.584622467 0.593802787 1 18.2372167 -10.10016765 4.942730065 1.000010091 0.662316631 0.346130225 0.138276376 1.85E-05 3.36E-06 0.134693537 0.032666816 7.94E-11 10.10016765 -0.33769346 DSASFNPELLTHILDGS(ph)PEK ddPTM_HeLa_A486_30min_R1 3 DSASFNPELLTHILDGSPEK 20 0 K7ELT1;I3L2U4;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 DSASFNPELLTHILDGS(1)PEK;DSASFNPELLTHILDGS(1)PEK;DSASFNPELLTHILDGS(1)PEK ;; 174.53 4.87E-14 192670000 225007.2 253562.3 118271 128769 208414.3 298618 372912.7 327699.9 217848.6 410984.8 TRUE FALSE FALSE 209235.3572 233469.0999 164068.6986 299780.7396 182273.0351 261777.5473 279605.9982 253089.7864 236731.8921 308071.531 0.679177841 0.757840554 0.532566895 0.973088096 0.59165816 0.849729757 0.907600898 0.821529291 0.768431576 1 18.23290584 -6.130173343 0.050618355 1.546312134 8.72E-11 0.33823894 0.119383602 115.9306773 2.148461375 27.67907352 37.36545062 7.41E-07 6.130173343 -1.546312134 DSASFNPELLTHILDGS(ph)PEKTR ddPTM_HeLa_A485_30min_R1 1 DSASFNPELLTHILDGSPEKTR 22 1 K7ELT1;I3L2U4;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 DSASFNPELLTHILDGS(0.992)PEKT(0.008)R 220.13 4.27E-36 32099000 30182 35976 24689 40518 58379 41449 72515 81757 30185 68807 TRUE FALSE FALSE 36895.88177 40183.08025 33822.4885 42731.39574 52566.58178 43619.20555 57021.57786 61705.96756 36242.85263 51654.6812 0.714279537 0.777917496 0.654780704 0.827251176 1.017653784 0.844438578 1.103899521 1.194586166 0.701637331 1 15.65661148 -5.58626919 3.693283049 0.986239603 0.722643064 0.452138477 0.129642814 0.20584425 5.690559098 0.039029375 0.052727569 2.59E-06 5.58626919 -0.263596539 DSASFNPELLTHILDGS(ph)PEKTR ddPTM_HeLa_A486_30min_R1 2 DSASFNPELLTHILDGSPEKTR 22 1 K7ELT1;I3L2U4;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 DSASFNPELLTHILDGS(0.958)PEKT(0.042)R;DSASFNPELLTHILDGS(0.991)PEKT(0.009)R ; 170.27 2.94E-14 50224000 50639 43441 28827 34367 58208 52110 74794 76877 36970 69996 TRUE FALSE FALSE 47089.4676 39998.57695 39989.58641 80008.11281 50907.00987 45681.19802 56079.75011 59373.78531 40174.58937 52468.546 0.897479942 0.762334389 0.762163038 1.524877644 0.970238624 0.870639678 1.068826075 1.131607217 0.765689016 1 15.67916519 DSAYISS(ph)SPLGSHQVFDFR ddPTM_HeLa_A485_30min_R1 2 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 DS(0.075)AY(0.002)IS(0.057)S(0.433)S(0.433)PLGSHQVFDFR;DS(0.001)AYIS(0.108)S(0.551)S(0.341)PLGSHQVFDFR ; 125.45 4.05E-06 789670000 323291 380873 338478 289598 441331 313202 379687 348895 310936 392747 TRUE FALSE FALSE 395205.9676 425412.7842 463695.0974 305418.0054 397390.536 329600.7724 298563.7707 263327.9542 373338.0031 294842.4009 1.340397332 1.442848054 1.572687972 1.035868669 1.347806607 1.117887968 1.012621556 0.893114265 1.266229016 1 18.16958449 -5.761164801 0.936475756 1.037681477 1.446897806 0.5148472 0.147213401 0.458953662 0.866615389 0.070759946 0.113025651 1.73E-06 5.761164801 0.409216329 DSAYISS(ph)SPLGSHQVFDFR ddPTM_HeLa_A486_30min_R1 1 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 DS(0.002)AYIS(0.07)S(0.464)S(0.464)PLGSHQVFDFR 116.48 2.29E-05 94461000 46245 51810 36906 8246 50022 36310 47300 41542 39788 40057 TRUE FALSE FALSE 43003.46431 47704.38691 51196.99158 19197.10473 43747.77432 31830.44137 35465.03971 32083.79346 43236.85588 30026.46647 1.432185314 1.588744615 1.705062153 0.639339456 1.456973779 1.060079494 1.181125982 1.068517119 1.439958175 1 14.87394709 -5.218680882 24.99871378 1.137694512 1.5766722 0.458059621 0.226013846 422.7027142 247132.1817 0.057569793 0.099712891 6.04E-06 5.218680882 0.438977688 DSAYISSS(ph)PLGSHQVFDFR ddPTM_HeLa_A485_30min_R1 3 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 DSAYIS(0.043)S(0.227)S(0.73)PLGSHQVFDFR;DSAYISS(0.001)S(0.999)PLGSHQVFDFR;DSAYIS(0.002)S(0.276)S(0.722)PLGSHQVFDFR ;; 177.32 1.24E-13 2858980000 983130 1104850 1100030 906890 1285040 943730 1154450 1048750 1002990 1247120 TRUE FALSE FALSE 1201823.877 1234052.597 1506976.873 956431.1043 1157096.906 993142.2435 907792.3265 791542.4181 1204280.893 936235.9355 1.283676295 1.318100011 1.609612295 1.021570598 1.235903111 1.060782016 0.969619187 0.845451865 1.286300651 1 19.83651262 -5.281979431 24.89398793 1.057109914 1.395226589 0.546458918 0.143471417 568.4144794 688901.767 0.040846777 0.060664308 5.22E-06 5.281979431 0.338116675 DSAYISSS(ph)PLGSHQVFDFR ddPTM_HeLa_A486_30min_R1 4 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 DSAYIS(0.001)S(0.231)S(0.768)PLGSHQVFDFR;DSAYIS(0.001)S(0.095)S(0.904)PLGSHQVFDFR;DS(0.003)AYIS(0.006)S(0.2)S(0.791)PLGSHQVFDFR;DSAYIS(0.003)S(0.197)S(0.799)PLGSHQVFDFR ;;; 244.78 6.12E-46 3327360000 3996200 3910130 3365690 597565 4416320 3590040 3578970 3744420 3775830 3529220 TRUE FALSE FALSE 3716087.016 3600277.058 4668975.304 1391161.519 3862383.965 3147137.366 2683473.852 2891897.306 4103121.985 2645480.341 1.404692736 1.360916202 1.764887545 0.525863488 1.459993448 1.189627954 1.014361668 1.093146398 1.550993187 1 21.33509827 -5.199153286 24.99996908 1.135786822 1.49524017 0.288257885 0.280422084 311.2245763 124916.2991 0.073285833 0.126934772 6.32E-06 5.199153286 0.359453347 DSAYQSITHYRPVS(ph)ASR ddPTM_HeLa_A485_30min_R1 5 DSAYQSITHYRPVSASR 17 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 DSAYQSITHYRPVS(0.999)AS(0.001)R;DSAYQSITHYRPVS(0.703)AS(0.297)R;DSAYQSITHYRPVS(1)ASR;DSAYQSIT(0.074)HYRPVS(0.733)AS(0.194)R;DSAYQSITHYRPVS(0.993)AS(0.007)R ;;;; 266.46 3.60E-52 4897240000 1453080 2013570 1321570 849200 1673100 1442990 1388500 2677690 1583730 2555120 TRUE FALSE FALSE 1776312.633 2249039.496 1810473.738 895589.6457 1506520.289 1518542.725 1091835.632 2020982.329 1901570.084 1918175.607 0.92604276 1.172488841 0.943851924 0.466896588 0.785392267 0.791659908 0.569205253 1.053596095 0.991343064 1 20.87130337 -10.31695171 13.83986829 0.999992449 0.849544735 0.042699665 0.203287588 3.07E-10 1.14E-10 0.212307828 0.051492212 4.82E-11 10.31695171 -0.150447714 DSAYQSITHYRPVS(ph)ASR ddPTM_HeLa_A486_30min_R1 6 DSAYQSITHYRPVSASR 17 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 DSAYQSITHYRPVS(0.889)AS(0.111)R;DSAYQSITHYRPVS(0.947)AS(0.053)R;DSAYQSITHYRPVS(0.947)AS(0.053)R;DSAYQSITHYRPVS(0.991)AS(0.009)R;DSAYQSITHYRPVS(0.986)AS(0.014)R;DSAYQSITHYRPVS(0.953)AS(0.047)R ;;;;; 263.16 6.25E-52 5223450000 1710771 1566414 1483157 343565 1942927 1094763 1293265 1159895 1571828 1050032 TRUE FALSE FALSE 1590854.787 1442285.65 2057475.111 799836.6828 1699226.979 959702.2718 969676.4182 895812.2288 1708075.317 787097.1526 2.021166996 1.832411215 2.614004007 1.016185461 2.15885291 1.219293284 1.231965349 1.138121547 2.170094646 1 19.5861822 -5.264855522 24.99682423 1.439657203 2.123515779 0.368577208 0.440661346 329.566376 2411530.285 0.118926855 0.184789554 5.43E-06 5.264855522 0.683858576 DSAYQSITHYRPVSAS(ph)R ddPTM_HeLa_A485_30min_R1 1 DSAYQSITHYRPVSASR 17 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 DSAYQSITHYRPVS(0.201)AS(0.799)R 222.39 1.65E-34 2416200000 306190 425220 276140 179220 412950 311520 378830 686330 321510 417850 TRUE FALSE FALSE 374300.9092 474945.7801 378295.6771 189010.3348 371835.248 327830.7055 297889.8757 518006.4914 386034.1079 313687.685 1.193227937 1.514072126 1.205962794 0.602543051 1.185367695 1.045086311 0.949638414 1.651344685 1.230632015 1 18.25896937 -9.975253255 13.40735657 0.999919672 1.173165887 0.035899912 0.272356517 0 0 0.277970444 0.067417735 1.06E-10 9.975253255 0.173246215 DSDAGS(ph)STPTTSTR ddPTM_HeLa_A485_30min_R1 1 DSDAGSSTPTTSTR 14 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.444)S(0.345)T(0.211)PTTSTR 96.734 0.00092896 77564000 70321 81082 69860 71546 93548 70185 90151 100880 67864 99603 TRUE FALSE FALSE 85963.66385 90563.83458 95704.12112 75454.37682 84234.03265 73859.77807 70889.50238 76139.02183 81483.68231 74773.80516 1.149649448 1.211170602 1.279915084 1.009101739 1.126517936 0.987776106 0.948052627 1.018257954 1.089735665 1 16.19024533 -5.27091577 24.98312277 1.025788773 1.213337601 0.703807812 0.05587228 359.5853723 947994.2428 0.016461048 0.024789174 5.36E-06 5.27091577 0.187548829 DSDAGS(ph)STPTTSTR ddPTM_HeLa_A486_30min_R1 2 DSDAGSSTPTTSTR 14 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.438)S(0.227)T(0.335)PTTSTR;DSDAGS(0.389)S(0.305)T(0.305)PT(0.001)TSTR ; 208.23 4.09E-22 2005800000 1538340 1603523 1173189 570493 1720251 1481739 1736185 1718818 1296879 1508864 TRUE FALSE FALSE 1430510.31 1476453.998 1627479.2 1328136.535 1504481.079 1298937.107 1301773.15 1327480.663 1409293.516 1131034.633 1.264780289 1.305401226 1.438929589 1.174266902 1.330181265 1.148450338 1.150957814 1.173687015 1.24602154 1 20.10921168 -6.133530816 1.211316659 1.148065933 1.3199697 0.445215581 0.085724945 0.453490669 1.37773754 0.039678034 0.040110348 7.35E-07 6.133530816 0.171903768 DSDAGSS(ph)TPTTSTR ddPTM_HeLa_A485_30min_R1 1 DSDAGSSTPTTSTR 14 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.445)S(0.457)T(0.098)PTTSTR 246.59 1.32E-35 296860000 404650 466320 414010 430490 558940 424230 516340 562240 433280 589690 TRUE FALSE FALSE 494662.9965 520852.0676 567169.5274 454006.5786 503289.971 446442.0268 406019.7409 424349.7584 520235.3217 442691.1354 1.117399823 1.176558611 1.281185644 1.025560582 1.136887393 1.008472931 0.917162573 0.958568457 1.175165437 1 18.75594096 -5.283462474 24.06293477 1.028605955 1.190199078 0.450422792 0.080948563 447.5770386 489031.7007 0.023847183 0.035410898 5.21E-06 5.283462474 0.161593122 DSDAGSS(ph)TPTTSTR ddPTM_HeLa_A486_30min_R1 1 DSDAGSSTPTTSTR 14 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.173)S(0.549)T(0.278)PTTSTR 227.47 5.10E-28 249790000 552540 516620 358530 183680 534640 457480 540020 534690 439810 502440 TRUE FALSE FALSE 513809.7993 475681.1497 497362.4178 427616.3227 467580.4659 401040.7689 404901.2843 412952.7592 477933.0849 376625.7537 1.364244995 1.263007495 1.320574637 1.135387898 1.241498919 1.064825666 1.075075935 1.096453854 1.268986734 1 18.52277213 -5.301188768 0.902120486 1.108605128 1.349998424 0.557911062 0.078066038 0.566030169 0.853657424 0.032698922 0.098856704 5.00E-06 5.301188768 0.241393296 DSDAGSST(ph)PTTSTR ddPTM_HeLa_A485_30min_R1 4 DSDAGSSTPTTSTR 14 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.118)S(0.217)T(0.665)PT(0.001)TSTR;DSDAGS(0.034)S(0.29)T(0.675)PT(0.001)TSTR;DSDAGS(0.005)S(0.147)T(0.848)PTTSTR;DSDAGS(0.127)S(0.213)T(0.658)PT(0.001)TSTR ;;; 232.98 3.69E-28 4515773000 2204430 2481900 2214630 2274340 3022240 2258650 2868420 3036330 2153600 3131890 TRUE FALSE FALSE 2694797.848 2772136.615 3033913.795 2398581.435 2721335.174 2376909.421 2255558.634 2291665.307 2585807.766 2351167.461 1.146153089 1.179046861 1.290386094 1.020166141 1.157439961 1.010948586 0.959335595 0.974692507 1.09979736 1 21.16494587 -5.818580787 1.231402447 1.005055966 1.194117763 0.539641956 0.069555469 0.342583293 1.095986305 0.028818186 0.039325486 1.52E-06 5.818580787 0.189061796 DSDAGSST(ph)PTTSTR ddPTM_HeLa_A486_30min_R1 2 DSDAGSSTPTTSTR 14 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.057)S(0.283)T(0.655)PT(0.006)TSTR;DSDAGS(0.167)S(0.119)T(0.683)PT(0.029)T(0.002)STR ; 236.24 1.76E-34 2114380000 2375680 2603150 1747630 906470 2618350 2303660 2656090 2603040 2077040 2559990 TRUE FALSE FALSE 2209157.1 2396866.913 2424359.139 2110307.97 2289932.128 2019457.851 1991508.189 2010384.616 2257079.5 1918951.841 1.151231132 1.249050061 1.263376749 1.099719089 1.193324438 1.052375473 1.037810406 1.047647248 1.176204348 1 20.87188707 -5.883763318 1.301483327 1.064612561 1.216612817 0.509514649 0.061692401 0.354768402 1.259277248 0.025360795 0.032023928 1.31E-06 5.883763318 0.152000256 DSDQVAQS(ph)DGEES(ph)PAAEEQLLGEHIKEEK ddPTM_HeLa_A485_30min_R1 1 DSDQVAQSDGEESPAAEEQLLGEHIKEEK 29 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 2 0 DSDQVAQS(1)DGEES(1)PAAEEQLLGEHIKEEK 98.114 0.0023438 161390000 162630 114210 60715 231520 126330 140060 209490 186380 105360 307510 TRUE FALSE FALSE 198806.4824 127565.866 83176.00506 244167.3514 113752.1416 147393.325 164730.7501 140670.0128 126504.7856 230853.4163 0.861180595 0.552583835 0.360297917 1.057672679 0.492746191 0.638471492 0.713572936 0.609347763 0.547987496 1 17.81661756 -10.1735257 4.922001511 1.000030371 0.644890457 0.243761112 0.185807385 5.95E-05 9.98E-06 0.172725499 0.041888509 6.71E-11 10.1735257 -0.355139914 DSDQVAQS(ph)DGEES(ph)PAAEEQLLGEHIKEEK ddPTM_HeLa_A486_30min_R1 2 DSDQVAQSDGEESPAAEEQLLGEHIKEEK 29 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 2 0 DSDQVAQS(1)DGEES(1)PAAEEQLLGEHIKEEK;DSDQVAQS(1)DGEES(1)PAAEEQLLGEHIKEEK ; 177.42 1.06E-14 317870000 255010 232151 87944 131710 170736 287716 362050 329500 181724 437910 TRUE FALSE FALSE 237135.1159 213754.5093 121998.272 306627.5363 149320.6988 252220.5252 271461.2606 254480.0429 197475.9826 328254.4857 0.722412415 0.651185341 0.371657593 0.934115297 0.454893095 0.768368861 0.826984162 0.775252294 0.601594163 1 18.3244552 -6.484709525 24.5663165 0.784435593 0.629150534 0.199504246 0.16752576 798.7738969 514104.0363 0.056491261 0.04980813 3.28E-07 6.484709525 -0.155285059 DSDQVAQS(ph)DGEESPAAEEQLLGEHIK ddPTM_HeLa_A485_30min_R1 3 DSDQVAQSDGEESPAAEEQLLGEHIK 26 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 0 DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(0.997)DGEES(0.003)PAAEEQLLGEHIK ;; 204.75 1.60E-28 1140890000 465220 390901 274226 611650 369289 317123 442366 342282 319705 714960 TRUE FALSE FALSE 568706.584 436613.4716 375673.6089 645062.8907 332521.2905 333727.0699 347850.8903 258336.8028 383866.861 536733.6299 1.0595695 0.813463974 0.699925602 1.201830582 0.619527587 0.6217741 0.648088495 0.481312868 0.715190626 1 19.03384676 -5.8258843 24.99999749 0.65044192 0.916990715 0.332152277 0.177783353 66.56461085 25821.49881 0.053042141 0.060144156 1.49E-06 5.8258843 0.266548795 DSDQVAQS(ph)DGEESPAAEEQLLGEHIK ddPTM_HeLa_A486_30min_R1 4 DSDQVAQSDGEESPAAEEQLLGEHIK 26 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 0 DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK;DSDQVAQS(1)DGEESPAAEEQLLGEHIK ;;; 222.34 2.60E-38 2570020000 1013170 1069480 567962 316092 647956 1058470 961730 889710 853385 1254020 TRUE FALSE FALSE 942152.015 984730.5098 787892.0969 735878.1504 566683.3165 927886.7331 721094.9819 687142.4552 927357.0989 940005.2297 1.002283801 1.047579821 0.838178419 0.782844741 0.602851238 0.987108054 0.767118053 0.730998545 0.986544617 1 19.84230926 -4.792313421 6.6600541 0.819233467 1.025352317 0.266679228 0.121981831 0.183365209 25.71889619 0.03102971 0.068199253 1.61E-05 4.792313421 0.206118849 DSDQVAQS(ph)DGEESPAAEEQLLGEHIKEEK ddPTM_HeLa_A485_30min_R1 2 DSDQVAQSDGEESPAAEEQLLGEHIKEEK 29 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 0 DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK;DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK ; 268.64 3.64E-64 2737400000 1363400 764240 432690 2070850 973090 1187160 1851760 1510900 821360 2520600 TRUE FALSE FALSE 1666683.626 853611.22 592760.0367 2183975.292 876205.7429 1249317.862 1456116.349 1140349.406 986199.418 1892260.808 0.880789593 0.451106537 0.313254935 1.15416188 0.463047028 0.660224984 0.769511445 0.602638601 0.521175207 1 20.85167952 -11.15326493 2.30796788 1.806217236 0.64299047 0.175567491 0.229900212 22673516.47 5230421.12 95660216.46 0.057219358 7.03E-12 11.15326493 -1.163226766 DSDQVAQS(ph)DGEESPAAEEQLLGEHIKEEK ddPTM_HeLa_A486_30min_R1 5 DSDQVAQSDGEESPAAEEQLLGEHIKEEK 29 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 0 DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK;DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK;DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK;DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK;DSDQVAQS(1)DGEESPAAEEQLLGEHIKEEK ;;;; 299.49 1.42E-92 4385370000 3227750 2814410 1000260 1625690 1954670 3596180 4429240 3800790 2218180 5608790 TRUE FALSE FALSE 3001501.393 2591385.902 1387587.46 3784688.478 1709497.062 3152519.875 3320997.304 2935433.088 2410453.628 4204312.477 0.71391016 0.616363773 0.330039089 0.900192005 0.406605615 0.74983006 0.789902588 0.698195746 0.573328848 1 22.00343847 -6.405003015 20.37346994 0.74518582 0.595204428 0.182710047 0.176674426 9.589584938 1623.75657 0.059639906 0.05259731 3.94E-07 6.405003015 -0.149981391 DSEGDSLGARPGLPYGLS(ph)DDESGGGR ddPTM_HeLa_A485_30min_R1 1 DSEGDSLGARPGLPYGLSDDESGGGR 26 1 Q8N8E2-2;Q8N8E2;C9JT52 Q8N8E2-2 ZNF513 Zinc finger protein 513 1 0 DSEGDSLGARPGLPYGLS(1)DDESGGGR 110.91 0.00019226 153050000 77115 96291 158030 55215 206350 91515 106010 129500 125770 107590 TRUE FALSE FALSE 94268.96571 107551.3948 216491.8732 58231.25564 185805.0695 96306.58389 83360.09748 97739.92195 151010.8854 80769.79305 1.16713145 1.331579428 2.680356913 0.720953384 2.300427703 1.192358928 1.032070213 1.210104895 1.869645565 1 16.30152822 DSEHIDDETRR ddPTM_HeLa_A486_30min_R1 1 DSEHIDDETRR 11 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 133.07 4.43E-05 323590000 96037 96831 85933 17083 114120 74536 111630 109460 89881 75370 FALSE FALSE TRUE 89305.30224 89157.75891 119208.559 39770.08733 99806.00547 65340.50615 83698.9933 84538.3475 97671.95745 56496.86142 1.580712627 1.578101096 2.11000321 0.703934454 1.766576106 1.156533381 1.481480408 1.49633706 1.728803247 1 15.7858831 -5.222905817 24.9999879 1.370912629 1.738454967 0.244078316 0.336099863 875.753642 568174.4745 0.086867781 0.150456177 5.99E-06 5.222905817 0.367542338 DSENLAS(ph)PSEYPENGER ddPTM_HeLa_A485_30min_R1 3 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 DSENLAS(0.936)PS(0.064)EYPENGER;DSENLAS(0.89)PS(0.11)EYPENGER;DSENLAS(0.997)PS(0.003)EYPENGER ;; 272.8 2.55E-59 10403300000 1215740 1403660 1207640 1372380 1747800 1413240 1773400 1677870 1267040 1705940 TRUE FALSE FALSE 1486177.169 1567805.827 1654396.29 1447349.644 1573782.895 1487235.061 1394498.603 1266369.752 1521323.306 1280680.553 1.160458917 1.224197418 1.291810269 1.130141034 1.228864521 1.161284957 1.088873099 0.988825627 1.187902246 1 20.28847923 -6.685299587 2.685834158 1.061945443 1.208106693 0.518334835 0.064351395 0.21828041 3.200894843 0.02737771 0.019404427 2.06E-07 6.685299587 0.14616125 DSENLAS(ph)PSEYPENGER ddPTM_HeLa_A486_30min_R1 3 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 DSENLAS(1)PSEYPENGER;DSENLAS(0.994)PS(0.006)EYPENGER;DSENLAS(0.996)PS(0.004)EYPENGER ;; 420.55 2.00E-172 8655310000 1869870 1930150 1312650 639970 2051490 1736200 1992370 1941590 1530160 2054440 TRUE FALSE FALSE 1738801.769 1777197.885 1820943.234 1489882.502 1794172.995 1522005.296 1493857.953 1499532.342 1662795.501 1539994.852 1.129095832 1.154028458 1.182434624 0.967459404 1.165051294 0.988318431 0.970040875 0.973725555 1.079740948 1 20.5544941 -5.578139369 0.901447325 1.002366923 1.159809133 0.43360582 0.064239524 0.595380131 1.001668625 0.029755331 0.061038189 2.64E-06 5.578139369 0.15744221 DSENLASPS(ph)EYPENGER ddPTM_HeLa_A485_30min_R1 1 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 DSENLAS(0.109)PS(0.891)EYPENGER 259.22 1.58E-51 515600000 97435 98260 89161 104460 108600 102950 132230 136530 84299 116330 TRUE FALSE FALSE 119109.0796 109750.6523 122145.3642 110166.3853 97787.40268 108340.3028 103977.9803 103045.8034 101217.0361 87331.07189 1.36387974 1.2567194 1.398647257 1.261479825 1.119732079 1.240569942 1.190618391 1.179944334 1.159003707 1 16.41420743 -1.000000008 0.053812655 0.600592324 2.423831311 0.740951769 0.055908604 223.4816075 0.906424307 6.833364317 33.01151818 0.099999998 1.000000008 1.823238987 DSENLASPSEY(ph)PENGER ddPTM_HeLa_A486_30min_R1 1 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 DSENLAS(0.005)PS(0.296)EY(0.7)PENGER 62.924 0.016003 544750000 137230 163460 119240 57384 166010 131650 176860 170060 121040 182640 TRUE FALSE FALSE 127610.8857 150506.8343 165412.9214 133592.852 145187.4778 115408.3615 132607.7574 131341.0504 131531.8447 136905.7552 0.932107532 1.099346292 1.208224746 0.975801578 1.060492144 0.842976698 0.968606157 0.959353755 0.960747373 1 17.06282357 -5.886404357 2.196093343 0.947375242 1.074312433 0.276765939 0.081086062 0.371996403 3.662701343 0.028205019 0.033277433 1.30E-06 5.886404357 0.126937191 DSENT(ph)PVKGGTVADLDEQDEETVTAGGK ddPTM_HeLa_A486_30min_R1 2 DSENTPVKGGTVADLDEQDEETVTAGGK 28 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.04)ENT(0.887)PVKGGT(0.072)VADLDEQDEETVTAGGK;DS(0.057)ENT(0.724)PVKGGT(0.219)VADLDEQDEETVTAGGK ; 160.77 1.17E-13 376020000 108396 111223 44550 59783 72739 134377 147061 128701 79754 199272 TRUE FALSE FALSE 100798.0002 102409.2844 61800.95309 139177.8453 63615.39636 117798.932 110264.7823 99398.59182 86667.14093 149372.9942 0.674807389 0.685594374 0.413735786 0.931747041 0.425882849 0.788622687 0.738184188 0.665438839 0.580206224 1 17.18855981 -10.91730334 2.398901617 1.216764873 0.657701876 0.326995828 0.148024985 13806617.96 6748947.93 16810204.19 0.035650455 1.21E-11 10.91730334 -0.559062998 DSENT(ph)PVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR ddPTM_HeLa_A485_30min_R1 2 DSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR 40 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.003)ENT(0.994)PVKGGT(0.004)VADLDEQDEETVTAGGKEDEDPAKGDQSR;DS(0.055)ENT(0.889)PVKGGT(0.055)VADLDEQDEETVTAGGKEDEDPAKGDQSR ; 200.01 2.34E-30 1913480000 118960 52482 29565 264750 112590 120770 257070 246660 70855 364390 TRUE FALSE FALSE 145422.2416 58619.31337 40502.3238 279212.6221 101380.1443 127093.3305 202144.8944 186166.2483 85074.94858 273554.2791 0.531602876 0.214287686 0.148059551 1.020684535 0.370603394 0.464600045 0.738957165 0.680545919 0.31099842 1 18.0614676 -14 0.095328703 2.476846065 0.155413554 0.267960409 0.249144796 274.37614 1.794392259 82.82245433 4.981129138 1.00E-14 14 -2.321432511 DSENT(ph)PVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR ddPTM_HeLa_A486_30min_R1 1 DSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR 40 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.009)ENT(0.915)PVKGGT(0.076)VADLDEQDEETVTAGGKEDEDPAKGDQSR 173.32 6.37E-16 1325300000 576640 432050 91142 609820 340890 761130 1069400 1016200 292200 1502800 TRUE FALSE FALSE 536220.5138 397812.7845 126434.6233 1419691.779 298132.3975 667229.5192 801824.809 784833.4435 317528.1313 1126489.098 0.476010389 0.353143928 0.112237769 1.260280087 0.264656265 0.5923089 0.711791006 0.696707535 0.281874127 1 20.10340192 -14 0.13414172 2.411586215 0.37099112 0.163614298 0.308711762 270.8538119 2.261983235 104.9315982 2.13223827 1.00E-14 14 -2.040595095 DSENTPVK(ac)GGTVADLDEQDEETVTAGGKEDEDPAKGDQSR ddPTM_HeLa_A485_30min_R1 1 DSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR 40 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 1 DSENTPVK(0.964)GGTVADLDEQDEETVTAGGK(0.036)EDEDPAKGDQSR 58.421 0.003421 4005900 1621.8 712.11 588.46 3186.5 1341.2 1659.6 2557.7 2415 1112.1 4235.6 FALSE TRUE FALSE 1982.563815 795.38507 806.1558419 3360.570426 1207.665419 1746.49409 2011.226501 1822.717463 1335.288269 3179.74287 0.623498156 0.250141317 0.253528626 1.05686861 0.37979971 0.54925639 0.632512308 0.573227943 0.419935927 1 11.63469439 -14 0.297906999 4.837168153 0.502298817 0.285526804 0.222058797 356.8348383 3.322100893 854.874522 0.229755893 1.00E-14 14 -4.334869336 DSFDDRGPS(ph)LNPVLDYDHGSR ddPTM_HeLa_A485_30min_R1 1 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DS(0.001)FDDRGPS(0.999)LNPVLDYDHGSR 121.94 4.97E-06 86027000 57010 105980 122020 26539 133370 79343 103880 113750 105100 66563 TRUE FALSE FALSE 69691.67782 118373.4391 167160.2757 27988.75837 120091.2145 83497.27679 81685.18938 85852.63415 126192.606 49970.0691 1.39466843 2.36888684 3.345208015 0.56011046 2.403262927 1.670945794 1.634682338 1.718081157 2.525363848 1 15.60877659 -5.252263881 24.99923099 1.706846306 2.369517506 0.180781986 0.698464643 1248.776151 3402363.89 0.185038073 0.314890199 5.59E-06 5.252263881 0.662671199 DSFDDRGPS(ph)LNPVLDYDHGSR ddPTM_HeLa_A486_30min_R1 2 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DSFDDRGPS(1)LNPVLDYDHGSR;DSFDDRGPS(1)LNPVLDYDHGSR ; 194.19 4.45E-20 174191000 200780 218723 249920 9307.9 301380 153135 205795 203736 224050 72784 TRUE FALSE FALSE 186706.3588 201390.5929 346695.7171 21669.2616 263578.1101 134242.7607 154302.9143 157349.7603 243470.8344 54558.41266 3.422136931 3.691283949 6.354578519 0.397175441 4.831117646 2.460532741 2.828214877 2.884060453 4.462571811 1 15.73551405 -5.249419519 24.97913936 2.858122601 4.409527852 0.234454619 1.463199716 1238.927396 2574679.36 0.378363196 0.648889147 5.63E-06 5.249419519 1.551405251 DSFDDRGPSLNPVLDYDHGS(ph)R ddPTM_HeLa_A485_30min_R1 2 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DSFDDRGPSLNPVLDYDHGS(1)R;DSFDDRGPSLNPVLDYDHGS(1)R ; 161.84 9.22E-14 535870000 339282 366161 334875 321528 570390 442430 552270 643100 383563 568880 TRUE FALSE FALSE 414754.1104 408980.3438 458759.1978 339092.2605 513599.9688 465594.9507 434273.0029 485378.7167 460540.5759 427068.6855 0.971164884 0.957645357 1.07420472 0.793999354 1.202616783 1.090210935 1.016869224 1.136535488 1.078375895 1 18.70410859 -5.77621989 24.99904306 1.090871999 0.958778016 0.396487981 0.083122149 247.6370691 418839.9134 0.024835153 0.028275542 1.67E-06 5.77621989 -0.132093982 DSFDDRGPSLNPVLDYDHGS(ph)R ddPTM_HeLa_A486_30min_R1 1 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DSFDDRGPSLNPVLDYDHGS(1)R 172.32 4.16E-14 144940000 162480 171660 147350 67124 210260 187420 217020 210060 167940 247740 TRUE FALSE FALSE 151090.991 158057.0364 204407.8662 156268.0643 183887.2302 164298.0259 162719.3006 162233.9236 182497.1744 185704.2915 0.813610659 0.851122153 1.100716976 0.841488708 0.990215297 0.88472929 0.876228004 0.873614294 0.982729979 1 17.50264763 DSFDDRGPSLNPVLDYDHGSR ddPTM_HeLa_A485_30min_R1 2 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 ; ; 177.87 2.19E-14 579030000 255920 463160 452930 198650 605180 349490 456590 505950 411490 360510 FALSE FALSE TRUE 312848.5211 517322.533 620487.655 209501.7465 544926.1543 367788.756 359035.8165 381864.9692 494072.2686 270641.4917 1.155951806 1.911467934 2.292655317 0.77409323 2.013461243 1.358951851 1.326610396 1.410962402 1.825559952 1 18.04602351 -5.245587746 24.99132111 1.426620911 1.799169191 0.152797687 0.42379554 1648.3834 2598799.653 0.111251137 0.191875023 5.68E-06 5.245587746 0.37254828 DSFDDRGPSLNPVLDYDHGSR ddPTM_HeLa_A486_30min_R1 2 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 ; ; 173.8 1.81E-13 457570000 453260 518270 521150 43754 685230 334860 425440 443300 494160 177614 FALSE FALSE TRUE 421488.8146 477200.3977 722953.2369 101861.5232 599282.0639 293548.3778 318990.4122 342370.2672 536994.1867 133138.2983 3.165796919 3.584245883 5.430092212 0.765080555 4.501199665 2.204837988 2.395932772 2.571538554 4.033356243 1 17.02256611 -5.249826341 24.99890413 2.628722708 4.012464865 0.253403526 1.21458194 1144.644328 2464023.802 0.314550738 0.538924683 5.63E-06 5.249826341 1.383742157 DSFEMEEVQS(ph)TEGEAPHVPATYQLGLTK ddPTM_HeLa_A485_30min_R1 2 DSFEMEEVQSTEGEAPHVPATYQLGLTK 28 0 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 DSFEMEEVQS(0.918)T(0.082)EGEAPHVPATYQLGLTK;DS(0.009)FEMEEVQS(0.796)T(0.195)EGEAPHVPATYQLGLTK ; 115 0.00013885 220223000 144384 155070 124961 167908 175460 187581 215874 224470 117297 214220 TRUE FALSE FALSE 176501.7227 173204.0876 171189.274 177080.3889 157990.5863 197402.4511 169750.7564 169418.3805 140837.432 160818.8964 1.097518554 1.077013283 1.06448482 1.101116802 0.982413074 1.227482936 1.055539866 1.053473095 0.875751762 1 17.29507741 -7.618952557 5.623581444 0.939721503 1.085126404 0.458237205 0.063599939 0.17634169 8.305829541 0.043204442 0.01559612 2.40E-08 7.618952557 0.145404902 DSFEMEEVQS(ph)TEGEAPHVPATYQLGLTK ddPTM_HeLa_A486_30min_R1 2 DSFEMEEVQSTEGEAPHVPATYQLGLTK 28 0 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 DSFEMEEVQS(0.868)T(0.132)EGEAPHVPATYQLGLTK;DSFEMEEVQS(0.789)T(0.211)EGEAPHVPATYQLGLTK ; 163.48 6.13E-14 181336000 136137 124877 86554 50125 148938 117267 127177 122148 112199 159083 TRUE FALSE FALSE 126594.4993 114981.2917 120070.0268 116693.5332 130256.8072 102799.7898 95355.96946 94337.56687 121924.4997 119247.5813 1.061610625 0.964223261 1.006896957 0.978581971 1.092322425 0.86207023 0.79964699 0.791106753 1.022448408 1 16.86360048 -6.279026867 24.64843462 0.876035667 1.014478218 0.376005015 0.078866849 675.7374131 947026.4383 0.027345453 0.024169356 5.26E-07 6.279026867 0.13844255 DSFFLDLS(ph)CEK ddPTM_HeLa_A486_30min_R1 1 DSFFLDLSCEK 11 0 O15381-2;O15381;C9JP83;C9J6P7;E9PH71 O15381-2 NVL Nuclear valosin-containing protein-like 1 0 DSFFLDLS(1)CEK 67.456 0.015234 10013000 27569 24635 16689 18049 25586 25187 38119 33378 18444 43496 TRUE FALSE FALSE 25636.55547 22682.83288 23151.42775 42018.98415 22376.7653 22079.68402 28581.22302 25778.55804 20042.74077 32604.31849 0.786293247 0.695700261 0.710072433 1.288755174 0.686312928 0.677201213 0.876608509 0.790648578 0.614726567 1 14.99277544 -8.761280492 16.07702312 1.000000113 0.797183995 0.106238508 0.180548648 0 0 0.177109658 0.042955402 1.73E-09 8.761280492 -0.202816118 DSFIENSSSNCTSGSSKPNS(ph)PSIS(ph)PSILSNTEHK ddPTM_HeLa_A486_30min_R1 1 DSFIENSSSNCTSGSSKPNSPSISPSILSNTEHK 34 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 2 0 DS(0.001)FIENS(0.011)S(0.011)S(0.012)NCT(0.012)S(0.013)GS(0.014)S(0.015)KPNS(0.907)PS(0.226)IS(0.589)PS(0.08)ILS(0.076)NT(0.031)EHK 58.722 0.034593 134780000 44533 48527 35000 19667 64764 53752 65156 72036 38083 61680 TRUE FALSE FALSE 41411.46667 44681.54379 48552.93733 45785.76992 56640.69522 47120.62475 48853.27965 55634.97533 41384.0651 46234.92653 0.895674975 0.966402396 1.050135492 0.990285339 1.225062944 1.019156475 1.056631497 1.20331056 0.895082316 1 15.49669548 -4.507398518 1.357173102 1.069929048 0.862323878 0.232568405 0.092746055 1.109455363 2.553922339 0.026495646 0.281360125 3.11E-05 4.507398518 -0.207605171 DSFLKR ddPTM_HeLa_A486_30min_R1 1 DSFLKR 6 1 M0R181;P46778;Q9H553-2;Q9H553 M0R181 RPL21;ALG2 "60S ribosomal protein L21;Alpha-1,3/1,6-mannosyltransferase ALG2" 0 0 77.748 0.0091505 0 94322 84137 63027 35781 124810 76232 91320 98564 78145 111340 FALSE FALSE TRUE 87710.51488 77469.6777 87432.74232 83299.97627 109155.166 66827.27091 68470.77012 76123.12884 84918.67152 83459.7393 1.05093205 0.92822813 1.047603827 0.998085747 1.307878109 0.800712673 0.820404793 0.912094017 1.017480671 1 16.34879279 DSFSHS(ph)PGAVSSLK ddPTM_HeLa_A485_30min_R1 2 DSFSHSPGAVSSLK 14 0 Q9H6R7;Q9H6R7-3 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 DSFSHS(1)PGAVSSLK;DSFS(0.001)HS(0.999)PGAVSSLK ; 185.99 1.25E-17 934240000 1220940 1668140 1380290 850510 2183790 1495990 2041950 2049190 1417850 1731120 TRUE FALSE FALSE 1492533.891 1863214.462 1890916.71 896971.2077 1966364.2 1574317.723 1605670.701 1546622.939 1702399.49 1299583.643 1.148470819 1.433701072 1.45501732 0.690198905 1.513072445 1.211401614 1.235527017 1.19009111 1.309957615 1 20.30961806 -10.81277526 2.381638385 0.912715216 1.243862451 0.100246965 0.218431937 21931900.91 13575572.97 11014214.04 0.054050561 1.54E-11 10.81277526 0.331147235 DSFSHS(ph)PGAVSSLK ddPTM_HeLa_A486_30min_R1 2 DSFSHSPGAVSSLK 14 0 Q9H6R7;Q9H6R7-3 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 DSFSHS(1)PGAVSSLK;DSFS(0.001)HS(0.999)PGAVSSLK ; 202.18 5.49E-22 1200660000 1687500 1944110 1423130 132402 2270700 1601420 1997880 1843760 1800990 1153700 TRUE FALSE FALSE 1569214.964 1790051.643 1974204.049 308238.5472 1985887.633 1403853.082 1497989.293 1423976.097 1957101.263 864806.0107 1.814528281 2.069888069 2.282828778 0.356425075 2.296338841 1.623315593 1.732167994 1.646584412 2.263052337 1 19.72201702 -10.85849723 2.535156132 0.661948891 1.77243932 0.160333255 0.539510149 20998081.66 12404868.33 42806720.34 0.134471794 1.39E-11 10.85849723 1.110490429 DSGGKTPGDFSYAYQKPEET(ph)TRSPDEEDYDYESYEK ddPTM_HeLa_A486_30min_R1 1 DSGGKTPGDFSYAYQKPEETTRSPDEEDYDYESYEK 36 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DSGGKTPGDFSY(0.001)AY(0.001)QKPEET(0.332)T(0.332)RS(0.332)PDEEDY(0.001)DYESYEK 82.336 0.00033275 415350000 184380 86524 31007 75102 117720 108790 195270 192000 55279 211750 TRUE FALSE FALSE 171455.9141 79667.52313 43013.7408 174841.2514 102954.4599 95368.5959 146411.3806 148285.7913 60070.62823 158726.4217 1.08019769 0.501917212 0.270992947 1.101525817 0.648628368 0.6008363 0.922413414 0.93422248 0.378453868 1 17.27618277 -5.265244227 24.99644605 0.786014204 0.606124091 0.081545233 0.274426109 882.4547507 5797408.211 0.075898703 0.117547829 5.43E-06 5.265244227 -0.179890113 DSGHGSTSVDSEGFSIPDTGSHCSSEYAAS(ph)SPGDR ddPTM_HeLa_A485_30min_R1 2 DSGHGSTSVDSEGFSIPDTGSHCSSEYAASSPGDR 35 0 A0A2R8Y6S3;C9J167;P54278-3;P54278 A0A2R8Y6S3 PMS2 Mismatch repair endonuclease PMS2 1 0 DSGHGSTSVDSEGFSIPDT(0.01)GS(0.002)HCS(0.001)S(0.001)EYAAS(0.571)S(0.414)PGDR;DSGHGSTSVDSEGFSIPDTGSHCSSEYAAS(0.668)S(0.33)PGDR ; 201.12 2.15E-29 363290000 50437 89756 99847 73075 116275 48412 73667 61232 79267 92659 TRUE FALSE FALSE 61656.53664 100252.1834 136784.5603 77066.90221 104698.2527 50946.77746 57927.44365 46214.75599 95175.15982 69560.81656 0.886368788 1.441216311 1.966402452 1.107906808 1.505132601 0.732406259 0.832759684 0.664379147 1.368229479 1 16.08598725 -6.257483225 24.97940788 0.893153904 1.402033704 0.344940922 0.316549491 371.1638963 2343555.765 0.106710118 0.102938968 5.53E-07 6.257483225 0.5088798 DSGNWDTSGSELS(ph)EGELEKR ddPTM_HeLa_A485_30min_R1 2 DSGNWDTSGSELSEGELEKR 20 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 DSGNWDTSGSELS(1)EGELEKR;DSGNWDTSGSELS(1)EGELEKR ; 187.16 2.45E-19 366480000 90494 90101 67591 133941 110253 101191 140281 150218 80025 158986 TRUE FALSE FALSE 110624.0781 100637.5282 92595.7236 141257.8577 99275.8242 106489.2043 110308.8184 113376.8 96085.28347 119353.7161 0.926859102 0.843187221 0.775809305 1.183522912 0.831778242 0.892215238 0.924217711 0.949922664 0.805046433 1 16.86488396 DSGNWDTSGSELS(ph)EGELEKR ddPTM_HeLa_A486_30min_R1 2 DSGNWDTSGSELSEGELEKR 20 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 DSGNWDTSGSELS(1)EGELEKR;DSGNWDTSGS(0.005)ELS(0.995)EGELEKR ; 151.91 6.79E-10 341930000 152176 137931 56706 48914 130636 151810 182032 187623 111875 208976 TRUE FALSE FALSE 141509.2482 127000.8452 78664.08184 113874.264 114250.4147 133081.2257 136485.6683 144905.3387 121572.4151 156647.0494 0.903363637 0.810745212 0.502174041 0.72694803 0.729349293 0.849561011 0.871294217 0.925043525 0.776091318 1 17.25715807 -6.345677894 2.790529229 0.885668526 0.72366132 0.329141692 0.107630835 0.355912555 5.415996632 0.04314169 0.037891835 4.51E-07 6.345677894 -0.162007206 DSGPLPT(ph)PPGVSLLGEPPKDYR ddPTM_HeLa_A485_30min_R1 3 DSGPLPTPPGVSLLGEPPKDYR 22 1 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 DS(0.001)GPLPT(0.998)PPGVSLLGEPPKDYR;DSGPLPT(1)PPGVSLLGEPPKDYR;DS(0.006)GPLPT(0.991)PPGVS(0.002)LLGEPPKDYR ;; 156.43 5.35E-10 402862000 494707 359227 306904 586630 621082 506331 684150 671320 368641 782200 TRUE FALSE FALSE 604752.8654 401235.4728 420440.5609 618676.1115 559244.8953 532841.7082 537975.7635 506677.7174 442623.8673 587211.9353 1.029871549 0.683289028 0.715994576 1.053582317 0.952373175 0.907409533 0.916152638 0.862853234 0.753771919 1 19.16352177 -5.243324795 24.99046848 0.915717388 0.797075461 0.162543943 0.114131331 1463.592655 2019136.823 0.031207631 0.053910083 5.71E-06 5.243324795 -0.118641927 DSGPLPT(ph)PPGVSLLGEPPKDYR ddPTM_HeLa_A486_30min_R1 2 DSGPLPTPPGVSLLGEPPKDYR 22 1 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 DSGPLPT(0.994)PPGVS(0.006)LLGEPPKDYR;DSGPLPT(0.999)PPGVSLLGEPPKDYR ; 102.69 0.00044289 363440000 461320 487330 282100 238550 506970 541370 617600 600110 363950 700540 TRUE FALSE FALSE 428983.8503 448712.196 391336.6749 555356.4556 443381.0953 474581.2736 463069.9477 463478.0533 395497.479 525120.2242 0.816925021 0.854494219 0.745232533 1.057579636 0.844342066 0.903757372 0.881836056 0.882613222 0.75315606 1 19.00228823 DSGPPTK(ac)K ddPTM_HeLa_A485_30min_R1 2 DSGPPTKK 8 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; DSGPPTK(1)K;DSGPPTK(1)K 147.36 0.00089477 67816000 22961 19047.1 17212.9 30812 37325 44470 88224 107319 120519 268500 FALSE TRUE FALSE 28068.59524 21274.49266 23580.668 32495.18154 33608.79194 46798.38044 69374.22168 80998.84698 144706.0578 201567.8914 0.139251321 0.105545047 0.116986231 0.161212092 0.166736834 0.232171801 0.344172979 0.401843996 0.717902325 1 17.62090632 -7.760288852 0.738008911 1.011318133 0.125062387 0.985024758 0.03463077 0.064774511 0.078989593 0.032025299 0.013048693 1.74E-08 7.760288852 -0.886255747 down DSGPPTK(ac)K ddPTM_HeLa_A486_30min_R1 2 DSGPPTKK 8 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; DSGPPTK(1)K;DSGPPTK(1)K 169.09 0.00014024 166846000 175302 227350 132887 89235 228250 271850 258340 261920 226310 282120 FALSE TRUE FALSE 163014.2351 209333.958 184344.4052 207743.5897 199620.7567 238311.911 193700.5996 202286.5337 245926.733 211475.3157 0.77084285 0.989874196 0.87170649 0.982353846 0.943943533 1.126901786 0.915948979 0.956549151 1.162909875 1 17.69012975 -2.590036681 0.42299328 1.028227434 3.77E-15 0.420183153 0.082132357 21.67732449 0.987391466 0.055612609 15.12378918 0.002570179 2.590036681 -1.028227434 DSGREDEPGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 DSGREDEPGSPR 12 1 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 1 0 DS(0.015)GREDEPGS(0.985)PR;DS(0.164)GREDEPGS(0.836)PR;DSGREDEPGS(1)PR;DSGREDEPGS(1)PR ;;; 199.69 6.88E-16 1215620000 1227550 1499920 1484210 1462150 1981410 1447270 1849420 1871810 1434640 1957360 TRUE FALSE FALSE 1500614.263 1675322.596 2033281.042 1542023.552 1784133.863 1523046.819 1454276.309 1412745.663 1722559.089 1469426.175 1.021224672 1.14012029 1.38372453 1.049405257 1.214170466 1.036490874 0.989689944 0.961426771 1.172266507 1 20.48682145 -6.306039857 8.809935949 1.026672897 1.166578372 0.270892805 0.106113721 0.546926225 103.3419088 0.037435984 0.033106431 4.94E-07 6.306039857 0.139905475 DSGREDEPGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 DSGREDEPGSPR 12 1 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 1 0 DS(0.001)GREDEPGS(0.999)PR;DS(0.207)GREDEPGS(0.793)PR;DSGREDEPGS(1)PR;DSGREDEPGS(1)PR ;;; 190.87 4.06E-12 1452180000 1588320 1805300 1449140 603057 1867490 1693440 1853420 1860510 1542260 1739440 TRUE FALSE FALSE 1476986.97 1662241.453 2010285.817 1403947.173 1633251.991 1484520.59 1389674.713 1436912.488 1675944.339 1303872.902 1.132769128 1.274849297 1.541780502 1.076751553 1.252615947 1.138547007 1.065805348 1.102034167 1.285358669 1 20.31437182 DSGRGDS(ph)VSDSGSDALR ddPTM_HeLa_A485_30min_R1 3 DSGRGDSVSDSGSDALR 17 1 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 DSGRGDS(0.999)VS(0.001)DSGSDALR;DSGRGDS(0.996)VS(0.004)DSGSDALR;DS(0.009)GRGDS(0.929)VS(0.06)DS(0.002)GSDALR ;; 225.39 1.22E-34 13482500000 2529810 2844120 2438930 2642400 3710550 2542598 3144140 3376350 2226530 2829350 TRUE FALSE FALSE 3092557.507 3176715.093 3341191.699 2786747.621 3341114.613 2675724.5 2472368.804 2548294.869 2673374.148 2124045.115 1.455975433 1.495596807 1.573032359 1.312000202 1.572996067 1.25973054 1.16399072 1.199736696 1.258623995 1 21.01838298 -6.429714338 4.315743977 1.175786383 1.477457227 0.736354822 0.092591786 0.122034926 3.964705665 0.032565264 0.028047096 3.72E-07 6.429714338 0.301670844 DSGRGDS(ph)VSDSGSDALR ddPTM_HeLa_A486_30min_R1 2 DSGRGDSVSDSGSDALR 17 1 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 DSGRGDS(0.994)VS(0.005)DS(0.001)GSDALR;DSGRGDS(0.997)VS(0.002)DSGSDALR ; 140.59 5.15E-07 1246790000 613780 640720 628750 229854 851450 714790 758660 724020 534950 687340 TRUE FALSE FALSE 570757.1916 589947.0137 872218.8385 535111.7282 744653.2015 626606.4773 568835.2437 559176.4512 581319.8967 515225.5902 1.10778114 1.145026616 1.692887262 1.038596953 1.445295451 1.216178872 1.104050836 1.085304111 1.128282267 1 18.97484473 -6.670623494 3.525682918 1.084295919 1.290249589 0.231199971 0.177176368 0.368808044 8.968016793 0.072126057 0.053123172 2.13E-07 6.670623494 0.20595367 DSGRGDSVS(ph)DSGSDALR ddPTM_HeLa_A485_30min_R1 1 DSGRGDSVSDSGSDALR 17 1 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 DS(0.002)GRGDS(0.246)VS(0.73)DS(0.016)GS(0.005)DALR 122.01 0.00042398 243120000 90954 120300 110110 104040 155450 99264 119090 120120 91060 110700 TRUE FALSE FALSE 111186.4035 134368.0385 150844.2711 109723.4418 139972.8522 104461.3095 93645.44862 90660.38166 109334.9067 83104.52728 1.337910306 1.616855819 1.815114964 1.32030643 1.684298759 1.256986989 1.126839315 1.090919889 1.315631173 1 16.34263945 -6.423338682 4.314530043 1.145616442 1.558631377 0.621780707 0.156692634 0.155317311 4.943555679 0.056417137 0.048687182 3.77E-07 6.423338682 0.413014935 DSGRGDSVS(ph)DSGSDALR ddPTM_HeLa_A486_30min_R1 1 DSGRGDSVSDSGSDALR 17 1 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 DS(0.001)GRGDS(0.449)VS(0.516)DS(0.017)GS(0.017)DALR 109.36 0.0022779 5922500000 2602500 2447600 1941200 966320 2867600 2532800 2956900 2769100 1778700 2667100 TRUE FALSE FALSE 2420078.189 2253643.262 2692884.627 2249641.795 2507918.869 2220328.888 2217052.345 2138636.379 1932879.148 1999240.8 1.2104986 1.127249535 1.346953617 1.125248042 1.254435618 1.110586022 1.108947129 1.069724257 0.966806574 1 20.93102082 -7.00557334 0.948948647 0.98543145 1.213647312 0.649136311 0.064072966 0.350944822 0.585138823 0.051008123 0.024277125 9.87E-08 7.00557334 0.228215862 DSGRLS(ph)PDLSVCGQPR ddPTM_HeLa_A485_30min_R1 4 DSGRLSPDLSVCGQPR 16 1 Q8TF76-2;Q8TF76 Q8TF76-2 GSG2 Serine/threonine-protein kinase haspin 1 0 DS(0.006)GRLS(0.994)PDLSVCGQPR;DS(0.01)GRLS(0.99)PDLSVCGQPR;DS(0.004)GRLS(0.996)PDLSVCGQPR;DSGRLS(1)PDLSVCGQPR ;;; 213.15 2.90E-26 1844130000 427053 586306 529823 494225 757081 533608 734303 795558 575759 828100 TRUE FALSE FALSE 522049.4665 654869.3865 725826.5755 521223.2603 681703.3574 561546.8898 577413.1653 600446.1531 691308.5501 621669.9101 0.839753474 1.053403705 1.16754336 0.838424463 1.096568044 0.903287871 0.928809897 0.965860087 1.112018676 1 19.24578923 -7.739569226 24.95253171 1.056009392 0.978966322 0.08824273 0.104284894 533.2010682 608354.382 0.069088049 0.026066419 1.82E-08 7.739569226 -0.077043069 DSGRLS(ph)PDLSVCGQPR ddPTM_HeLa_A486_30min_R1 2 DSGRLSPDLSVCGQPR 16 1 Q8TF76-2;Q8TF76 Q8TF76-2 GSG2 Serine/threonine-protein kinase haspin 1 0 DSGRLS(1)PDLSVCGQPR;DSGRLS(1)PDLSVCGQPR ; 186.9 3.73E-18 1732030000 600810 594820 537980 203086 715530 598260 765130 752310 551050 732330 TRUE FALSE FALSE 558696.3216 547684.2969 746300.2636 472794.4714 625781.5553 524452.7639 573686.3813 581025.4358 598815.4577 548949.8013 1.017754848 0.997694681 1.359505481 0.861270867 1.139961348 0.955374722 1.045061643 1.058430906 1.090838281 1 19.0663147 DSGS(ph)DLSHRPK ddPTM_HeLa_A486_30min_R1 2 DSGSDLSHRPK 11 1 O95251-4;O95251;E7EUP3;D6RFZ5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 1 0 DS(0.153)GS(0.788)DLS(0.059)HRPK;DS(0.155)GS(0.84)DLS(0.004)HRPK ; 96.734 0.00089922 285170000 708720 720460 380130 219500 674110 785280 924890 839810 597080 898260 TRUE FALSE FALSE 659042.3878 663368.1257 527326.5162 511007.0929 589556.838 688400.1377 693472.7395 648603.5959 648835.3751 673329.8493 0.978780888 0.985205284 0.783162245 0.758925352 0.875583993 1.022381732 1.029915338 0.963277651 0.96362188 1 19.3609539 -6.251243454 22.02057866 0.995673923 0.870681407 0.420651252 0.069968295 154.6503084 334003.8839 0.026301946 0.025936574 5.61E-07 6.251243454 -0.124992516 DSGS(ph)QEVLSELR ddPTM_HeLa_A486_30min_R1 1 DSGSQEVLSELR 12 0 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 DS(0.003)GS(0.997)QEVLSELR 100.22 0.001057 136370000 383670 328900 111630 327380 269130 525910 684720 619900 252780 999800 TRUE FALSE FALSE 356776.7143 302836.7662 154856.1256 762157.1849 235373.2059 461028.5713 513395.8138 478762.3023 274691.1739 749443.5724 0.476055473 0.404082145 0.206628132 1.016964069 0.314063946 0.615161152 0.685035982 0.638823682 0.366526826 1 19.51546033 -14 0.170610097 2.751219572 0.425886398 0.292137437 0.219384807 172.7469525 1.630614491 103.243226 0.775686354 1.00E-14 14 -2.325333174 DSGSDGHSVSSRDS(ph)AAPS(ph)PIPGADNLSADPVVSPPTSIPFK ddPTM_HeLa_A485_30min_R1 1 DSGSDGHSVSSRDSAAPSPIPGADNLSADPVVSPPTSIPFK 41 1 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 2 0 DS(0.01)GS(0.011)DGHS(0.079)VS(0.095)S(0.104)RDS(0.709)AAPS(0.993)PIPGADNLSADPVVSPPTSIPFK 127.32 2.34E-07 95167000 19746 26371 23930 16154 35086 20550 35209 32430 20304 26641 TRUE FALSE FALSE 24138.42958 29454.85905 32782.70281 17036.45212 31592.71465 21625.96622 27686.30952 24476.49165 24378.82656 19999.88899 1.206928178 1.472751127 1.639144238 0.851827334 1.5796445 1.081304313 1.38432316 1.223831375 1.218948094 1 14.28770437 -13.95386367 0.106587001 7.68E-11 1.491323508 0.164697954 0.219774667 301.4529433 2.171521309 65.59496083 2.93540633 1.11E-14 13.95386367 1.491323508 DSGSDLSHRPK(ac)R ddPTM_HeLa_A485_30min_R1 1 DSGSDLSHRPKR 12 2 O95251-4;O95251;E7EUP3;D6RFZ5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 1 DSGSDLSHRPK(1)R 126.12 0.0007196 24381000 4985.5 6748.4 6237.3 5517.2 6706 5867.3 6967.3 6278 5740.8 6831.2 FALSE TRUE FALSE 6094.507275 7537.566677 8544.736826 5818.590666 6038.327094 6174.502755 5478.679437 4738.310656 6892.925902 5128.307559 1.188405181 1.469796144 1.666190401 1.134602517 1.177450265 1.204003989 1.068321152 0.923952123 1.344093704 1 12.32426707 -5.352467687 9.163188975 1.121377594 1.443931215 0.481071511 0.152172735 0.320876686 30.09709291 0.042858376 0.0636175 4.44E-06 5.352467687 0.322553621 DSGSDLSHRPK(ac)R ddPTM_HeLa_A486_30min_R1 2 DSGSDLSHRPKR 12 2 O95251-4;O95251;E7EUP3;D6RFZ5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 1 ; DSGSDLSHRPK(1)R;DSGSDLSHRPK(1)R 193.73 5.49E-14 37879000 11875.8 13650.3 10879.4 453.47 13988.3 10918.9 10524.4 9493.4 11721.3 9508.3 FALSE TRUE FALSE 11043.36775 12568.60051 15092.19504 1055.701077 12233.75698 9571.837133 7891.083804 7331.960059 12737.31172 7127.359791 1.54943318 1.763430061 2.117501499 0.148119515 1.716450037 1.342970948 1.107153846 1.02870632 1.787100988 1 12.79915204 DSGSDQDLDGAGVRAS(ph)DLEDEESAAR ddPTM_HeLa_A485_30min_R1 2 DSGSDQDLDGAGVRASDLEDEESAAR 26 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DSGSDQDLDGAGVRAS(1)DLEDEESAAR;DSGSDQDLDGAGVRAS(0.999)DLEDEES(0.001)AAR ; 99.6 0.00084086 1686590000 702880 747700 795930 784790 950770 781560 827530 775290 727930 949350 TRUE FALSE FALSE 859233.2311 835137.0109 1090377.628 827661.0905 856108.0004 822481.2731 650721.4552 585148.9119 874018.874 712694.5165 1.205612238 1.171802212 1.529936885 1.161312556 1.201227147 1.154044621 0.913044004 0.821037483 1.226358354 1 19.4429243 -6.435782906 2.052489709 0.977517098 1.267693834 0.439717498 0.138435129 0.298811501 2.494496449 0.059618467 0.048606584 3.67E-07 6.435782906 0.290176736 DSGSDQDLDGAGVRAS(ph)DLEDEESAAR ddPTM_HeLa_A486_30min_R1 2 DSGSDQDLDGAGVRASDLEDEESAAR 26 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DSGSDQDLDGAGVRAS(1)DLEDEESAAR;DSGSDQDLDGAGVRAS(1)DLEDEESAAR ; 345.22 1.25E-142 2336700000 983190 1136630 892800 371900 1278430 1134800 1236310 1224680 923110 1240290 TRUE FALSE FALSE 914273.4582 1046559.299 1238516.07 865801.9948 1118077.389 994799.9138 926972.1616 945847.0986 1003125.918 929713.3111 0.983392888 1.12567959 1.332148368 0.931256963 1.202604475 1.070007175 0.997051619 1.017353508 1.078962629 1 19.82642639 -6.520474559 20.76897092 1.026036644 1.119347156 0.143858967 0.105124838 21.5410279 186123.5122 0.038943563 0.030875236 3.02E-07 6.520474559 0.093310512 DSGSDTASAIIPSTTPSVDS(ph)DDESVVKDK ddPTM_HeLa_A486_30min_R1 2 DSGSDTASAIIPSTTPSVDSDDESVVKDK 29 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 DSGSDTASAIIPSTTPS(0.047)VDS(0.949)DDES(0.004)VVKDK;DSGSDTASAIIPST(0.002)TPS(0.006)VDS(0.983)DDES(0.009)VVKDK ; 181.93 9.97E-21 466990000 465190 504920 224219 395020 455150 803340 997890 885330 451330 978570 TRUE FALSE FALSE 432582.5832 464908.3003 311042.6016 919626.5232 398060.8429 704232.0786 748207.3674 683759.6856 490451.6478 733529.7026 0.589727426 0.633796149 0.424035456 1.253700457 0.542664928 0.96005939 1.020009639 0.932149964 0.668618661 1 19.48449586 -5.234767927 24.99995996 0.899437269 0.55764731 0.431898762 0.189774052 732.7900638 686865.483 0.049389725 0.085514482 5.82E-06 5.234767927 -0.341789959 DSGSS(ph)SPLPK ddPTM_HeLa_A486_30min_R1 2 DSGSSSPLPK 10 0 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DS(0.007)GS(0.065)S(0.464)S(0.464)PLPK;DSGS(0.001)S(0.5)S(0.5)PLPK ; 136.94 3.65E-05 993480000 2554500 2632200 1237260 1063130 2240700 2944100 3252000 3032500 2053760 3550300 TRUE FALSE FALSE 2375442.741 2423614.886 1716360.207 2475020.368 1959650.512 2580886.875 2438315.204 2342065.949 2231781.57 2661281.771 0.892593474 0.91069458 0.644937423 0.930010642 0.736355892 0.969790912 0.916218354 0.880051851 0.838611527 1 21.34368984 -6.27396733 24.98557343 0.913143005 0.823856589 0.227269613 0.089786009 1325.031841 2642618.314 0.03089941 0.02743688 5.32E-07 6.27396733 -0.089286416 DSGYIDCWDSERSDSLS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 DSGYIDCWDSERSDSLSPPR 20 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DSGYIDCWDS(0.031)ERS(0.216)DS(0.169)LS(0.584)PPR;DSGYIDCWDSERSDSLS(1)PPR ; 189.09 1.62E-19 290380000 73765 150134 143926 59964 282460 183994 244410 379150 128207 107836 TRUE FALSE FALSE 90173.76976 167690.8653 197170.2167 63239.68148 254337.2906 193627.6413 192189.8069 286162.868 153936.9689 80954.46977 1.113882532 2.071421946 2.435569243 0.781175909 3.141732524 2.391809147 2.374048121 3.534861865 1.901525257 1 16.30482312 -5.774113005 24.99999843 2.516632352 1.693795518 0.185610397 0.774854167 352.5835404 695504.0225 0.229129768 0.261504518 1.68E-06 5.774113005 -0.822836834 DSGYIDCWDSERSDSLS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 DSGYIDCWDSERSDSLSPPR 20 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DSGYIDCWDSERS(0.001)DS(0.006)LS(0.993)PPR 79.589 0.0011849 84085000 23892 32501 30846 17881 64009 28707 39104 47739 15652 27202 TRUE FALSE FALSE 22217.29418 29925.50239 42790.39728 41627.87166 55980.39436 25165.42221 29319.7656 36869.87184 17008.72796 20390.44214 1.089593547 1.467624006 2.098551713 2.04153845 2.74542327 1.234177368 1.437917108 1.808193838 0.834151993 1 14.31560544 -7.570847006 1.099103663 0.926394116 1.820362683 0.285825031 0.476379073 0.670008391 1.513725703 0.468049315 0.163454093 2.69E-08 7.570847006 0.893968567 DSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_HeLa_A485_30min_R1 3 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 DS(0.121)HS(0.879)PDLQLPTPEVIPSSGSK;DS(0.164)HS(0.836)PDLQLPTPEVIPSSGSK;DS(0.206)HS(0.794)PDLQLPTPEVIPSSGSK ;; 177.6 6.95E-15 969340000 1366820 1194790 1058840 1710830 1376210 1186870 1564050 1257310 1256440 2395630 TRUE FALSE FALSE 1670864.394 1334510.297 1450548.978 1804288.311 1239189.7 1249012.678 1229877.94 948952.7511 1508595.983 1798443.529 0.929061361 0.742036253 0.806557979 1.003249911 0.689034535 0.694496467 0.683856858 0.527652237 0.838834225 1 20.77831743 -5.806095119 24.99908752 0.710381282 0.856522746 0.167326296 0.133257292 197.1447652 110364.0974 0.039800649 0.045129896 1.56E-06 5.806095119 0.146141463 DSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_HeLa_A486_30min_R1 2 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BQK9;H3BPE1;H0Y6T5;H0Y4F5 H3BQK9 MACF1 1 0 DS(0.127)HS(0.873)PDLQLPTPEVIPSSGSK;DS(0.152)HS(0.848)PDLQLPTPEVIPSSGSK ; 160.52 1.50E-13 819600000 1051200 1194190 710600 378500 1050900 1122060 1242750 1158590 939580 1233780 TRUE FALSE FALSE 977516.3084 1099558.035 985763.3505 881167.1283 919086.3227 983631.6455 931800.8055 894804.3488 1021023.551 924833.4574 1.05696469 1.188925451 1.065882016 0.952784657 0.993785763 1.063577055 1.007533625 0.967530253 1.104008016 1 19.81883407 -4.998582345 24.97843328 1.01225967 1.124059767 0.431912602 0.050805962 39.2609077 691699.2497 0.012729688 0.026204033 1.00E-05 4.998582345 0.111800097 DSHS(ph)S(ph)EEDEASSQTDLSQTISK ddPTM_HeLa_A485_30min_R1 1 DSHSSEEDEASSQTDLSQTISK 22 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 2 0 DS(0.102)HS(0.918)S(0.98)EEDEASSQTDLSQTISK 209.4 3.34E-27 460400000 171650 177730 134700 218660 186550 189770 201680 260220 189290 418570 TRUE FALSE FALSE 209832.9503 198513.9775 184531.1353 230604.8421 167976.427 199706.0638 158589.4204 196400.637 227278.7667 314228.2022 0.667772494 0.631750989 0.587251985 0.733876974 0.534568272 0.635544685 0.504695057 0.625025493 0.72329207 1 18.26145314 -8.150580219 2.406928987 0.999611612 0.612942901 0.784581346 0.060993527 0.252478916 2.790971143 0.057909001 0.015753227 7.07E-09 8.150580219 -0.386668711 DSHS(ph)S(ph)EEDEASSQTDLSQTISKK ddPTM_HeLa_A485_30min_R1 1 DSHSSEEDEASSQTDLSQTISKK 23 1 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 2 0 DS(0.124)HS(0.885)S(0.988)EEDEAS(0.001)S(0.001)QTDLSQTISKK 71.528 0.0033666 339810000 388360 340780 190230 302770 371360 412880 578370 784070 296630 720400 TRUE FALSE FALSE 474749.3422 380631.2566 260603.9931 319309.5584 334386.0945 434497.7584 454796.5247 591775.6031 356160.9201 540817.538 0.87783644 0.703807162 0.481870455 0.590420125 0.618297431 0.80340915 0.840942634 1.094224136 0.658560226 1 19.04478241 -6.526624088 2.378710352 0.909096425 0.644380508 0.401312017 0.14072599 0.300491449 3.419378742 0.060440189 0.046949129 2.97E-07 6.526624088 -0.264715917 DSHSSEEDEASSQT(ph)DLS(ph)QTIS(ph)KK ddPTM_HeLa_A486_30min_R1 1 DSHSSEEDEASSQTDLSQTISKK 23 1 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 3 0 DS(0.058)HS(0.062)S(0.064)EEDEAS(0.079)S(0.401)QT(0.442)DLS(0.776)QT(0.15)IS(0.969)KK 44.811 0.028407 195310000 167750 179550 100950 60984 185780 190140 220500 203700 151160 187300 TRUE FALSE FALSE 155991.5913 165321.8041 140040.5435 141973.834 162477.7401 166682.46 165328.5678 157321.9567 164262.6705 140398.8609 1.111060234 1.177515281 0.997447861 1.011217848 1.15725825 1.187206641 1.177563456 1.120535849 1.169971533 1 17.0991717 -5.796883763 24.99978053 1.146145695 1.076191825 0.148701472 0.06876275 302.4588659 213330.0173 0.021678197 0.024581576 1.60E-06 5.796883763 -0.069953871 DSIS(ph)SDSETSEPLSCR ddPTM_HeLa_A485_30min_R1 1 DSISSDSETSEPLSCR 16 0 O75164 O75164 KDM4A Lysine-specific demethylase 4A 1 0 DSIS(0.971)S(0.029)DSETSEPLSCR 390.71 1.10E-134 399770000 250460 263530 260310 315140 384180 274100 376520 372240 275240 359410 TRUE FALSE FALSE 306173.9629 294347.5411 356609.5014 332355.3002 345929.6903 288451.4522 296073.4261 280947.5564 330478.1433 269815.7015 1.134752208 1.090920727 1.321678092 1.231786358 1.282096218 1.069068444 1.09731726 1.041257254 1.224829176 1 18.04161478 -6.276174843 24.72912014 1.089749425 1.212671445 0.370426392 0.081914738 833.2178702 1398305.763 0.02947684 0.026104857 5.29E-07 6.276174843 0.12292202 DSIS(ph)SDSETSEPLSCR ddPTM_HeLa_A486_30min_R1 2 DSISSDSETSEPLSCR 16 0 O75164 O75164 KDM4A Lysine-specific demethylase 4A 1 0 DSIS(0.857)S(0.143)DSETSEPLSCR;DSIS(0.98)S(0.02)DSETSEPLSCR ; 418.72 5.99E-154 949340000 1056370 1320560 941530 435830 1464450 1311240 1375560 1525060 1001560 1353040 TRUE FALSE FALSE 982323.9181 1215914.016 1306115.631 1014634.266 1280765.026 1149472.541 1031380.339 1177837.13 1088376.027 1014229.977 0.968541593 1.198854346 1.287790403 1.000398616 1.262795475 1.133345066 1.016909736 1.161311691 1.073105757 1 19.95195339 -8.231782183 0.552854043 0.997572314 1.145647184 0.1292879 0.102293848 2.479636401 1.650476192 0.120831877 0.048960552 5.86E-09 8.231782183 0.14807487 DSISAVSSEKVS(ph)PS(ph)KSPSLSPSPPS(ph)PLEK ddPTM_HeLa_A485_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 DS(0.017)IS(0.033)AVS(0.042)S(0.044)EKVS(0.847)PS(0.399)KS(0.356)PS(0.219)LS(0.056)PS(0.1)PPS(0.887)PLEK 64.072 0.011398 694650000 144700 64806 31913 394200 104060 73675 178720 98336 55050 469560 TRUE FALSE FALSE 176888.0158 72384.49796 43718.94671 415734.1478 93699.42102 77532.50908 140535.012 74218.94182 66098.03005 352507.3336 0.501799534 0.205341821 0.1240228 1.179363117 0.26580843 0.219945804 0.398672591 0.210545809 0.187508241 1 18.42729375 -10.18654426 4.457515896 1.000145269 0.367138966 0.297907235 0.292034589 170567367.1 129930097.1 225691.6872 0.071722589 6.51E-11 10.18654426 -0.633006304 DSISAVSSEKVS(ph)PS(ph)KSPSLSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 DS(0.003)IS(0.003)AVS(0.02)S(0.023)EKVS(0.881)PS(0.533)KS(0.533)PS(0.004)LSPSPPS(1)PLEK 132.08 3.24E-06 625820000 160100 124360 40495 201820 94900 262560 325680 288490 121730 503240 TRUE FALSE FALSE 148877.8168 114505.2607 56175.74849 469847.1594 82996.75709 230168.0167 244191.4193 222807.1247 132281.6544 377225.4285 0.394665379 0.303545976 0.148918244 1.245534166 0.220018988 0.610160396 0.647335521 0.590647151 0.350670036 1 18.5250674 -14 0.1326597 2.498697007 0.328525292 0.200298888 0.29596566 246.867925 2.047609031 100.3662258 2.124608729 1.00E-14 14 -2.170171715 DSISAVSSEKVS(ph)PSKS(ph)PSLS(ph)PSPPSPLEK ddPTM_HeLa_A486_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 DSISAVSS(0.001)EKVS(0.772)PS(0.229)KS(0.989)PS(0.108)LS(0.893)PS(0.007)PPSPLEK 121.28 3.31E-05 286360000 281290 292830 61786 431880 196070 519890 749830 605520 231760 879830 TRUE FALSE FALSE 261573.0236 269625.0843 85711.19389 1005438.466 171477.0723 455751.2577 562214.6031 467656.3144 251849.1434 659514.8413 0.39661431 0.408823377 0.129960978 1.524512267 0.260004873 0.691040185 0.852466947 0.709091419 0.38187032 1 19.3310456 DSISAVSSEKVS(ph)PSKS(ph)PSLSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 DS(0.001)IS(0.006)AVS(0.035)S(0.041)EKVS(0.903)PS(0.054)KS(0.832)PS(0.126)LS(0.009)PS(0.003)PPS(0.989)PLEK 139.69 6.04E-07 750940000 331110 249900 61876 352300 162840 428190 642360 514600 211980 902940 TRUE FALSE FALSE 307900.8989 230097.0139 85836.0443 820172.2043 142415.0888 375364.2713 481634.7338 397436.8136 230354.5971 676837.9468 0.45491081 0.339958797 0.126819196 1.211770422 0.210412388 0.554585146 0.711595347 0.587196412 0.340339365 1 19.36845093 -14 0.189252646 3.005774828 0.424650242 0.20206124 0.290737767 228.7555026 2.234671519 174.2093247 0.793190412 1.00E-14 14 -2.581124586 DSISAVSSEKVS(ph)PSKSPSLSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 DSISAVS(0.006)S(0.008)EKVS(0.963)PS(0.02)KS(0.002)PSLSPSPPS(1)PLEK 179.93 1.50E-20 389430000 209300 176390 85670 155270 138950 298890 382090 315730 155960 489580 TRUE FALSE FALSE 194629.1508 162412.214 118843.7183 361476.4069 121521.5953 262015.9907 286487.0407 243845.1713 169478.7384 366985.9814 0.53034492 0.442556997 0.323837215 0.984986962 0.331134162 0.713967301 0.780648459 0.664453641 0.461812568 1 18.48536543 -14 0.102924205 2.226271037 0.334865912 0.296036717 0.19673642 233.1553695 1.619294639 62.06536697 3.011218225 1.00E-14 14 -1.891405125 DSISAVSSEKVSPS(ph)KS(ph)PSLSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 DSISAVS(0.007)S(0.008)EKVS(0.139)PS(0.854)KS(0.909)PS(0.083)LS(0.001)PS(0.042)PPS(0.956)PLEK 133.54 2.74E-06 187720000 120290 103570 39409 162660 73683 196980 264940 223200 100510 372560 TRUE FALSE FALSE 111858.2922 95362.736 54669.22021 378680.7004 64440.99107 172678.6103 198649.2098 172382.2324 109222.2877 279268.551 0.400540239 0.341473237 0.195758599 1.355973306 0.230749187 0.618324583 0.711319656 0.617263318 0.39110128 1 18.09129359 -14 0.063171598 2.311446852 4.41E-08 0.155767291 0.317312432 763.7834142 3.501779175 159.28685 24.15447803 1.00E-14 14 -2.311446808 DSISAVSSEKVSPS(ph)KSPSLSPSPPS(ph)PLEK ddPTM_HeLa_A485_30min_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 DSISAVS(0.002)S(0.002)EKVS(0.06)PS(0.841)KS(0.096)PSLSPSPPS(1)PLEK 203.21 7.96E-29 522730000 546440 245960 169890 1102300 412510 366220 738230 419780 286540 1465500 TRUE FALSE FALSE 667993.6928 274722.8824 232739.3807 1162515.858 371439.056 385394.7129 580501.1297 316828.2968 344045.9497 1100177.821 0.607168842 0.249707708 0.211547058 1.056661783 0.337617292 0.350302202 0.527643004 0.287979171 0.312718493 1 20.06930529 -10.17819209 4.819168228 1.000054498 0.436632202 0.335901168 0.237089779 647252120.5 53.38517621 443218.068 0.057456411 6.63E-11 10.17819209 -0.563422296 DSITPDIATKPGQPLFLDSIS(ph)PK ddPTM_HeLa_A486_30min_R1 1 DSITPDIATKPGQPLFLDSISPK 23 1 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 0 DSITPDIATKPGQPLFLDS(0.083)IS(0.917)PK 115.54 5.67E-05 225660000 189720 144340 78563 149430 141260 241230 328520 260780 116730 434770 TRUE FALSE FALSE 176421.6077 132901.9727 108984.6976 347880.5918 123541.8536 211469.4952 246320.8213 201406.0868 126848.2504 325900.7621 0.541335364 0.407798901 0.334410686 1.067443321 0.379078137 0.648876958 0.75581542 0.617998207 0.389223546 1 18.3140732 -11.61568743 2.157702752 9.999717007 0.577569509 0.271596705 0.210380953 5258820.856 267721.9992 232809845.6 0.052542736 2.42E-12 11.61568743 -9.422147498 DSKPIALKEEIVT(ph)PK ddPTM_HeLa_A486_30min_R1 2 DSKPIALKEEIVTPK 15 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 DSKPIALKEEIVT(1)PK;DSKPIALKEEIVT(1)PK ; 168.84 3.90E-12 1336070000 3619200 2939600 943890 2960000 2403490 4303800 6694300 5720500 2325740 7594800 TRUE FALSE FALSE 3365512.77 2706655.39 1309389.486 6891029.59 2102021.873 3772840.914 5019315.335 4418067.028 2527337.016 5693012.646 0.591165518 0.475434635 0.229999399 1.210436375 0.369228386 0.662714304 0.881662425 0.776050802 0.443936659 1 22.44076087 -13.99999998 0.053719211 2.335553743 2.91E-10 0.159629722 0.265050029 916.1523704 3.615900232 171.6992 34.34297833 1.00E-14 13.99999998 -2.335553743 DSKPS(ph)STPR ddPTM_HeLa_A485_30min_R1 1 DSKPSSTPR 9 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 DS(0.055)KPS(0.315)S(0.315)T(0.315)PR 50.284 0.024999 70253000 289210 186440 114800 516060 106840 406510 131310 208350 209570 341200 TRUE FALSE FALSE 353543.7667 208242.5362 157269.2972 544251.0511 96202.63446 427794.235 103254.5458 157251.8358 251628.7767 256145.1193 1.380247914 0.812986547 0.613985141 2.124776191 0.375578636 1.670124483 0.403109558 0.613916971 0.982368032 1 17.96660188 -6.782773542 24.99825348 0.717675246 1.130019534 0.135766939 0.503918533 499.2185266 584952.5842 0.20155147 0.13603067 1.65E-07 6.782773542 0.412344288 DSKPS(ph)STPR ddPTM_HeLa_A486_30min_R1 1 DSKPSSTPR 9 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 DS(0.076)KPS(0.308)S(0.308)T(0.308)PR 64.439 0.011023 774670000 1280200 504620 1313400 549590 545320 4277100 930230 1016000 2832800 2078300 TRUE FALSE FALSE 1190464.591 464632.0734 1821983.654 1279473.295 476920.8807 3749434.888 697476.615 784678.9791 3078349.385 1557880.153 0.764156722 0.298246353 1.169527483 0.821291222 0.306134512 2.406754385 0.447708775 0.50368379 1.975986009 1 20.57115282 DSKPSS(ph)TPR ddPTM_HeLa_A485_30min_R1 2 DSKPSSTPR 9 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 DS(0.128)KPS(0.079)S(0.396)T(0.396)PR;DS(0.02)KPS(0.083)S(0.564)T(0.333)PR ; 74.944 0.0056341 705020000 3017900 1294870 451460 5101800 655230 3557300 1173780 1758870 1735640 3387000 TRUE FALSE FALSE 3689221.443 1446293.783 618473.8408 5380498.416 589993.0005 3743554.727 922992.3141 1327504.375 2083967.028 2542683.233 1.450916652 0.568806119 0.243236685 2.116071064 0.232035589 1.472285135 0.362999332 0.522087989 0.819593648 1 21.27792031 -6.789615186 24.99984598 0.636344482 0.973191687 0.072721553 0.57295391 626.7707344 556115.6185 0.231180919 0.155896666 1.62E-07 6.789615186 0.336847205 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPR ddPTM_HeLa_A485_30min_R1 1 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.598)S(0.402)PEQLAAGAEEGGGPR 246.34 6.45E-51 1033600000 339320 304120 379470 379750 420180 380570 452080 468900 375230 616350 TRUE FALSE FALSE 414800.5634 339684.1885 519851.7441 400494.7809 378345.4039 400496.0567 355489.4148 353901.5398 450535.2192 462705.2881 0.896468171 0.734126446 1.123505085 0.865550473 0.817681175 0.86555323 0.768284746 0.764853026 0.973698012 1 18.81973406 -5.504816242 24.88651573 0.847824217 0.91545674 0.030542982 0.114000308 2135.267628 2941972.812 0.031939522 0.046324057 3.13E-06 5.504816242 0.067632523 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPR ddPTM_HeLa_A486_30min_R1 5 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.5)S(0.5)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.5)S(0.5)PEQLAAGAEEGGGPR;DS(0.08)LGDFIEHY(0.01)AQLGPS(0.455)S(0.455)PEQLAAGAEEGGGPR;DS(0.018)LGDFIEHY(0.008)AQLGPS(0.487)S(0.487)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.639)S(0.361)PEQLAAGAEEGGGPR ;;;; 180.06 6.40E-21 428376000 183896 210904 165410 65501.9 234333 201450.1 227116 222282 196139 219214 TRUE FALSE FALSE 171005.84 194191.1989 229461.1818 152491.7335 204940.7701 176597.2349 170289.1746 171673.241 213140.4864 164321.3876 1.040679139 1.181776772 1.396417017 0.928009042 1.247194739 1.074706327 1.036317774 1.044740697 1.297095221 1 17.32616074 -5.269689911 24.98598791 1.095297968 1.203839559 0.141627671 0.130963719 1269.790683 3845446.492 0.036054567 0.054452592 5.37E-06 5.269689911 0.108541591 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPRR ddPTM_HeLa_A485_30min_R1 1 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.566)S(0.434)PEQLAAGAEEGGGPRR 118.81 1.78E-05 335360000 28279 36312 34779 26426 41231 39545 47892 64393 31757 33484 TRUE FALSE FALSE 34569.56599 40558.37253 47645.19937 27869.58547 37125.89687 41615.51505 37659.48296 48600.51579 38130.33861 25137.05503 1.375243279 1.613489428 1.895416918 1.108705273 1.476938998 1.655544574 1.498166071 1.933421227 1.516897607 1 14.61752802 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPRR ddPTM_HeLa_A486_30min_R1 2 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.619)S(0.381)PEQLAAGAEEGGGPRR;DSLGDFIEHY(0.072)AQLGPS(0.464)S(0.464)PEQLAAGAEEGGGPRR ; 239.5 1.13E-50 1542370000 99986.2 102972.2 88675.1 40587.2 143759 101805 122027 128501.6 88768.3 122277 TRUE FALSE FALSE 92977.68371 94812.30785 123012.4735 94489.05276 125727.4057 89245.33418 91494.55393 99244.59085 96462.80772 91658.04331 1.014397431 1.034413396 1.34208051 1.030886645 1.371700739 0.97367706 0.998216312 1.082770123 1.052420543 1 16.48397387 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPR ddPTM_HeLa_A485_30min_R1 6 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.11)S(0.89)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.093)S(0.907)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.118)S(0.882)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.223)S(0.777)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.217)S(0.783)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.066)S(0.934)PEQLAAGAEEGGGPR ;;;;; 286 2.68E-78 4215340000 351000 398977 429143 409283 496505 414401 517882 526238 409031 553783 TRUE FALSE FALSE 429078.7391 445633.8895 587900.8538 431641.0939 447071.2189 436098.3956 407232.28 397177.3054 491119.7698 415735.0897 1.032096519 1.071917912 1.414123725 1.038259951 1.075375233 1.048981446 0.979547529 0.955361516 1.181328644 1 18.665305 -5.44121647 24.99998408 1.037224413 1.173226497 0.2328712 0.110447348 142.0372794 43481.41654 0.031388585 0.046556785 3.62E-06 5.44121647 0.136002084 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPR ddPTM_HeLa_A486_30min_R1 5 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.085)S(0.915)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.162)S(0.838)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.025)S(0.975)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.228)S(0.772)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.159)S(0.841)PEQLAAGAEEGGGPR ;;;; 341.57 2.42E-128 5638760000 1009228 1269440 987872 313204.3 1347166 1268871 1215948 1344263 1082486 1292977 TRUE FALSE FALSE 938486.3289 1168844.951 1370402.495 729155.4389 1178191.878 1112330.597 911704.9494 1038203.66 1176316.758 969207.1433 0.968303149 1.205980537 1.413941802 0.752321569 1.215624427 1.147670655 0.940670893 1.071188618 1.213689732 1 19.88644551 -5.234980923 24.99030008 1.058277074 1.197065605 0.143923621 0.163509178 1601.33511 1512476.91 0.043849278 0.075919638 5.82E-06 5.234980923 0.138788531 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPRR ddPTM_HeLa_A485_30min_R1 4 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.193)S(0.807)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.223)S(0.777)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.17)S(0.83)PEQLAAGAEEGGGPRR;DSLGDFIEHY(0.002)AQLGPS(0.469)S(0.529)PEQLAAGAEEGGGPRR ;;; 270.21 4.58E-65 1536788000 255981.4 400595 304579 224603.3 405503 429073 500410 546618 297061 338591.2 TRUE FALSE FALSE 312923.5793 447441.1005 417255.4467 236872.8096 365129.6975 451538.5988 393493.3155 412559.0784 356678.4179 254186.6451 1.231077971 1.760285637 1.641531743 0.931885345 1.436462948 1.776405674 1.548048739 1.623055681 1.403214625 1 17.95552871 -8.030674991 20.35063274 0.999999987 1.498973569 0.272479298 0.24096573 412.0284583 273352.8265 0.240755447 0.062162776 9.32E-09 8.030674991 0.498973582 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPRR ddPTM_HeLa_A486_30min_R1 5 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.039)S(0.961)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.176)S(0.824)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.211)S(0.789)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.008)S(0.992)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.426)S(0.574)PEQLAAGAEEGGGPRR ;;;; 235.31 1.50E-50 1896270000 645133 732427 614768 263597 924327 639716 804778 874103 565165 833613 TRUE FALSE FALSE 599912.5082 674386.8171 852822.6337 613667.1375 808389.2887 560794.3441 603414.0323 675088.8284 614153.9572 624870.8789 0.960058355 1.079241872 1.364798173 0.98207031 1.29369013 0.897456359 0.965661951 1.080365322 0.982849382 1 19.25319858 -6.27796522 24.82672036 0.989064152 1.136982618 0.271010151 0.123501005 1081.043142 1624043.521 0.042928341 0.037968834 5.27E-07 6.27796522 0.147918466 DSLIT(ph)PHVS(ph)R ddPTM_HeLa_A485_30min_R1 2 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 DS(0.01)LIT(0.99)PHVS(1)R;DS(0.001)LIT(0.999)PHVS(1)R ; 77.776 0.014586 354780000 474160 496150 441720 477290 484510 413570 511400 444530 387250 544850 TRUE FALSE FALSE 579635.2562 554170.4266 605130.6095 503363.1441 436270.4832 435223.8857 402135.2122 335508.3205 464967.5229 409028.9222 1.417100906 1.354844111 1.479432325 1.23062971 1.066600574 1.064041837 0.983146155 0.820255738 1.136759524 1 18.64184333 -5.664390931 1.745618865 0.987985368 1.416211585 0.833056722 0.081885038 0.132680995 0.831460224 0.028039319 0.04038225 2.17E-06 5.664390931 0.428226217 DSLIT(ph)PHVS(ph)R ddPTM_HeLa_A486_30min_R1 2 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 DS(0.001)LIT(0.999)PHVS(1)R;DSLIT(1)PHVS(1)R ; 77.192 0.015184 646560000 799120 976360 628890 343080 768130 873290 909430 869070 748380 921730 TRUE FALSE FALSE 743105.8147 898989.6778 872413.0503 798707.5783 671783.9729 765552.3588 681880.995 671201.7327 813250.181 690922.8085 1.075526536 1.301143437 1.262678029 1.156001175 0.972299604 1.10801431 0.986913424 0.971456904 1.177049261 1 19.39816501 -5.577687318 5.121236496 1.036336241 1.220542633 0.497274486 0.08154346 0.152842703 8.456201182 0.023620856 0.031108245 2.64E-06 5.577687318 0.184206392 DSLIT(ph)PHVSR ddPTM_HeLa_A485_30min_R1 4 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 DSLIT(1)PHVSR;DSLIT(1)PHVSR;DSLIT(1)PHVSR;DSLIT(1)PHVSR ;;; 150.49 4.68E-06 712660000 596210 1023540 1050420 277831 1157000 658480 800020 674600 819460 651790 TRUE FALSE FALSE 728834.8576 1143234.099 1439014.07 293008.204 1041805.018 692956.9946 629089.1914 509153.2923 983918.1055 489310.7483 1.48951328 2.336417304 2.940900184 0.598818246 2.129127597 1.416190012 1.285663954 1.04055203 2.010824632 1 18.90039145 -5.256965705 24.99520858 1.388127629 2.263690911 0.368718895 0.539057813 416.1662346 2325186.436 0.143904478 0.238686854 5.53E-06 5.256965705 0.875563283 DSLIT(ph)PHVSR ddPTM_HeLa_A486_30min_R1 3 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 DSLIT(1)PHVSR;DSLIT(1)PHVSR;DSLIT(1)PHVSR ;; 144.57 7.11E-06 699410000 693340 817070 741510 38935 874210 533720 621230 582210 867690 224940 TRUE FALSE FALSE 644740.4464 752322.3975 1028642.53 90642.64767 764558.4301 467875.0529 465791.6833 449653.4926 942902.0678 168613.5599 3.82377578 4.461814329 6.100591975 0.537576264 4.534382826 2.774836456 2.762480572 2.666769463 5.592089204 1 17.36336104 -5.236654024 24.99765218 2.972619235 4.762035753 0.264019975 1.485274843 1127.31877 1136973.353 0.384400641 0.66542447 5.80E-06 5.236654024 1.789416518 DSLITPHVS(ph)R ddPTM_HeLa_A485_30min_R1 4 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 DSLITPHVS(1)R;DSLITPHVS(1)R;DSLITPHVS(1)R;DSLITPHVS(1)R ;;; 151.7 2.41E-06 1764050000 1111540 1360240 1247210 1291150 1455260 1162420 1337160 1207870 1234620 1656830 TRUE FALSE FALSE 1358798.238 1519308.235 1708604.88 1361682.255 1310369.205 1223282.514 1051464.842 911637.9886 1482396.909 1243812.773 1.09244596 1.221492711 1.373683337 1.09476465 1.053510008 0.983494092 0.845356203 0.732938275 1.19181676 1 20.24633791 -5.858088069 1.730011424 0.926953786 1.225064792 0.447838661 0.130120938 0.304388579 1.877961536 0.048015797 0.059149691 1.39E-06 5.858088069 0.298111006 DSLITPHVS(ph)R ddPTM_HeLa_A486_30min_R1 5 DSLITPHVSR 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 DSLITPHVS(1)R;DSLITPHVS(1)R;DSLITPHVS(1)R;DSLITPHVS(1)R;DSLITPHVS(1)R ;;;; 136.93 2.67E-05 1786760000 1631370 1812820 1270790 367566 1634320 1562960 1605020 1607070 1541060 1716400 TRUE FALSE FALSE 1517019.387 1669165.541 1762873.921 855712.2238 1429328.346 1370137.886 1203427.02 1241175.243 1674640.322 1286602.268 1.179089626 1.297343851 1.370177843 0.665094602 1.110932556 1.064927305 0.935352789 0.964692255 1.301599075 1 20.29513471 -5.202940565 24.99981449 1.008485761 1.283717947 0.3966574 0.156032264 268.1551841 114597.0201 0.041395885 0.071699747 6.27E-06 5.202940565 0.275232186 DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER ddPTM_HeLa_A485_30min_R1 4 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHS(0.006)QDLGS(0.993)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER ;;; 286.26 7.80E-78 874360000 345436 372085 389697 397268 503363 384782 534350 472448 389946 597413 TRUE FALSE FALSE 422277.0465 415597.104 533862.1369 418969.7449 453246.4123 404928.5905 420181.7573 356579.3872 468204.5854 448488.9337 0.941555108 0.926660778 1.190357436 0.934180787 1.010607795 0.902873093 0.936883222 0.795068419 1.043960174 1 18.77471286 -6.255411872 23.40281391 0.923019146 1.003404714 0.100150382 0.093291165 407.6692721 1582845.558 0.030722652 0.029900245 5.55E-07 6.255411872 0.080385567 DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER ddPTM_HeLa_A486_30min_R1 5 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER;DSLLDGHFVLATLSDTDSHSQDLGS(1)PER ;;;; 232.4 2.26E-39 855620000 281368 359022 318350 73495.4 392689 359112 404751 379113 370922 321053 TRUE FALSE FALSE 261645.5562 330571.7892 441623.6457 171101.0055 343434.2839 314808.4126 303478.0188 292797.2459 403073.8176 240659.2391 1.087203455 1.373609384 1.835057932 0.710967948 1.427056303 1.308108568 1.261027916 1.216646604 1.674873648 1 17.87663228 -5.228243004 24.99994902 1.250369659 1.426121893 0.089060759 0.292317952 1920.687181 1446453.749 0.077563881 0.134335464 5.91E-06 5.228243004 0.175752234 DSLLQDGEFSMDLR ddPTM_HeLa_A485_30min_R1 5 DSLLQDGEFSMDLR 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ;;;; ;;;; 225.23 9.02E-22 265537000 207325 254349 259634 251126 354260 267056 345512 371047 276016 372973 FALSE FALSE TRUE 253443.731 284092.903 355683.4209 264844.3775 318988.6305 281038.6392 271690.5386 280047.1415 331409.8794 279997.6952 0.905163633 1.014625863 1.270308388 0.945880563 1.139254487 1.003717688 0.97033134 1.000176595 1.183616455 1 18.09505543 DSLLQDGEFSMDLR ddPTM_HeLa_A486_30min_R1 4 DSLLQDGEFSMDLR 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ;;; ;;; 184.31 8.67E-16 224857000 140053 147382 135244 66824.7 210434 159621 177742 173626 145912 171470 FALSE FALSE TRUE 130236.0079 135702.9136 187614.0988 155571.2787 184039.4055 139928.5839 133269.0716 134095.15 158559.7696 128532.7959 1.013251186 1.055784344 1.459659361 1.21036252 1.431847835 1.088660547 1.036848772 1.043275758 1.233613324 1 16.97177699 -6.474750746 24.97402969 1.07928537 1.237951569 0.224210801 0.142964075 625.3624612 324506.0399 0.052325031 0.046152154 3.35E-07 6.474750746 0.158666199 DSLPLPVRSR ddPTM_HeLa_A485_30min_R1 1 DSLPLPVRSR 10 1 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 0 0 61.78 0.034106 656700000 70078 118590 117830 60877 110170 102170 106600 116020 97665 89887 FALSE FALSE TRUE 85666.60933 132458.0689 161420.2203 64202.55636 99201.08797 107519.4632 83824.03916 87565.91309 117265.4697 67479.82515 1.269514394 1.962928455 2.392125646 0.951433354 1.470085137 1.59335717 1.242208897 1.29766064 1.737785618 1 16.04216861 -5.268528295 24.95231629 1.353371027 1.883663398 0.349297645 0.34100907 605.5320166 2131415.871 0.095130584 0.144571674 5.39E-06 5.268528295 0.530292371 DSLPLPVRSR ddPTM_HeLa_A486_30min_R1 3 DSLPLPVRSR 10 1 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 0 0 ;; ;; 71.451 0.016798 2021590000 173739 189235 175275 56910.4 219271 154656 187087 195371 151906 168489 FALSE FALSE TRUE 161560.7933 174239.3294 243146.174 132490.2873 191767.9866 135576.1151 140275.8538 150889.2882 165073.3344 126298.2577 1.279200491 1.379586168 1.925174412 1.049027039 1.518373967 1.0734599 1.110671329 1.194706015 1.307011968 1 16.94647521 -5.907131678 1.430803648 1.154390071 1.47627199 0.269398144 0.225164587 0.558073907 2.370795327 0.08883608 0.10792989 1.24E-06 5.907131678 0.321881919 DSLS(ph)PVLHPSDLILTR ddPTM_HeLa_A485_30min_R1 4 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 DS(0.369)LS(0.631)PVLHPSDLILTR;DS(0.004)LS(0.996)PVLHPSDLILTR;DS(0.003)LS(0.997)PVLHPSDLILTR;DS(0.005)LS(0.995)PVLHPSDLILTR ;;; 194.92 1.13E-18 2711368000 858553 1376550 1362440 414350 1786160 917130 1286290 1239930 1091120 907392 TRUE FALSE FALSE 1049535.153 1537525.548 1866463.252 436984.8913 1608323.639 965149.5086 1011463.633 935835.2234 1310097.776 681195.8737 1.540724472 2.257097565 2.739980267 0.64149668 2.361029626 1.416845794 1.484835232 1.373812232 1.923232107 1 19.37771017 -6.960592392 0.07699342 1.98E-09 3.224981572 0.164470536 0.55904878 37.77792891 2.193486693 40.42460663 47.61820693 1.09E-07 6.960592392 3.22498157 DSLS(ph)PVLHPSDLILTR ddPTM_HeLa_A486_30min_R1 4 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 DS(0.001)LS(0.999)PVLHPSDLILTR;DS(0.011)LS(0.989)PVLHPSDLILTR;DS(0.004)LS(0.996)PVLHPSDLILTR;DS(0.004)LS(0.996)PVLHPSDLILTR ;;; 250.94 1.67E-42 2275710000 2177290 2237350 2143990 93901 2809000 1562930 2057910 1922750 2112300 817190 TRUE FALSE FALSE 2024673.215 2060054.238 2974200.346 218606.2735 2456669.027 1370111.587 1542999.152 1484981.798 2295395.865 612560.305 3.305263495 3.363022744 4.855359255 0.356873065 4.010493346 2.236696659 2.518934281 2.424221397 3.747216145 1 19.22449236 -5.224880997 24.99976928 2.461400416 3.793395476 0.276776952 1.105630557 837.054942 572403.4427 0.282922949 0.490019162 5.96E-06 5.224880997 1.33199506 DSLSVSSNDAS(ph)PPASVASLQPHMIGAQSSPGPK ddPTM_HeLa_A485_30min_R1 1 DSLSVSSNDASPPASVASLQPHMIGAQSSPGPK 33 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 DSLSVS(0.007)S(0.037)NDAS(0.465)PPAS(0.465)VAS(0.026)LQPHMIGAQSSPGPK 114 4.46E-05 167510000 134030 140910 98730 153340 208990 135150 210300 213230 143380 278800 TRUE FALSE FALSE 163844.5111 157388.1987 135254.3355 161716.5759 188182.2218 142226.245 165367.687 160935.0082 172155.0508 209300.2909 0.782820274 0.751973148 0.64622144 0.772653374 0.899101578 0.679531999 0.790097741 0.76891918 0.822526572 1 17.67521479 -14 0.218860781 2.198782325 0.735690465 0.558783621 0.063767267 116.2612783 1.163193028 61.21748567 0.127047146 1.00E-14 14 -1.46309186 DSLVEHDEEFVQRQDS(ph)PR ddPTM_HeLa_A485_30min_R1 2 DSLVEHDEEFVQRQDSPR 18 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 DSLVEHDEEFVQRQDS(1)PR;DSLVEHDEEFVQRQDS(1)PR ; 156.45 5.70E-09 1537790000 323790 553140 544440 331180 773020 588800 738870 821300 524230 484070 TRUE FALSE FALSE 395815.9684 617824.9113 745851.012 349271.5248 696055.4146 619628.6575 581004.3885 619874.8873 629438.1525 363400.2576 1.089201122 1.700122381 2.052422904 0.961120741 1.91539604 1.705085906 1.598800156 1.705763478 1.732079544 1 18.47119992 -9.766639339 6.411078661 0.999999999 1.618196718 0.243792801 0.319959373 3.35E-08 6.21E-09 0.296940531 0.072018656 1.71E-10 9.766639339 0.618196719 DSLVEHDEEFVQRQDS(ph)PR ddPTM_HeLa_A486_30min_R1 2 DSLVEHDEEFVQRQDSPR 18 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 DSLVEHDEEFVQRQDS(1)PR;DSLVEHDEEFVQRQDS(1)PR ; 191.66 1.63E-18 1296880000 500360 534430 614090 146749 874470 498030 657790 709890 465210 544410 TRUE FALSE FALSE 465287.3479 492079.8204 851882.0939 341639.0883 764785.8185 436588.1222 493203.9846 548263.5438 505534.7774 408086.1925 1.140169299 1.205823254 2.08750531 0.837173849 1.874079135 1.069842916 1.208577976 1.343499373 1.238794124 1 18.63851437 DSMTVSEVTASISSPS(ph)EEDASEMPEFLDK ddPTM_HeLa_A486_30min_R1 1 DSMTVSEVTASISSPSEEDASEMPEFLDK 29 0 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 DSMTVSEVTASISS(0.003)PS(0.898)EEDAS(0.1)EMPEFLDK 99.614 0.00055313 18911000 22552 16120 10901 10970 20923 19547 23457 23536 15554 28910 TRUE FALSE FALSE 20971.22126 14842.59249 15122.15914 25538.71439 18298.64224 17135.48988 17587.8105 18177.36659 16902.23324 21670.74783 0.967720239 0.684913719 0.697814365 1.178487914 0.844393668 0.790719823 0.811592227 0.838797384 0.779956159 1 14.40346132 -11.20531662 2.308666733 1.470527219 0.842056047 0.107558293 0.134875201 24593303.92 4463810.057 60533430.99 0.034096249 6.23E-12 11.20531662 -0.628471172 DSMVMHNS(ph)DPNLHLLAEGAPIDWGEEYSNSGGGGS(ph)PSPSTPESATLSEKR ddPTM_HeLa_A485_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 50 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 DS(0.071)MVMHNS(0.927)DPNLHLLAEGAPIDWGEEY(0.041)S(0.147)NS(0.147)GGGGS(0.483)PS(0.132)PS(0.037)T(0.011)PES(0.001)AT(0.001)LS(0.001)EKR 55.574 0.0014496 274130000 9175.5 14961 10708 10906 15173 15937 21419 23534 12508 15841 TRUE FALSE FALSE 11216.55832 16710.55881 14669.3348 11501.76716 13662.32284 16771.43668 16842.65567 17762.2496 15018.24087 11892.13023 0.943191682 1.405177919 1.233532976 0.967174673 1.148854123 1.410297091 1.416285842 1.493613781 1.262872217 1 13.53771955 -6.251152983 23.58954296 1.35369415 1.149982177 0.187023239 0.175594723 486.8683702 1116522.907 0.057318686 0.05661767 5.61E-07 6.251152983 -0.203711973 DSMVMHNS(ph)DPNLHLLAEGAPIDWGEEYSNSGGGGS(ph)PSPSTPESATLSEKR ddPTM_HeLa_A486_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 50 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 DS(0.041)MVMHNS(0.959)DPNLHLLAEGAPIDWGEEYSNSGGGGS(0.537)PS(0.428)PS(0.027)T(0.005)PES(0.001)AT(0.001)LS(0.001)EKR 178.14 7.62E-20 182940000 25204 20752 15861 5351.7 28558 20184 27461 28151 16987 27179 TRUE FALSE FALSE 23437.32975 19107.53594 22002.80397 12459.02806 24975.98935 17693.9033 20589.96735 21741.63183 18459.44684 20373.20149 1.150399939 0.937875962 1.07998755 0.611540021 1.225923641 0.868489093 1.010639754 1.067168154 0.906065099 1 14.31438509 -8.926479245 14.60086912 0.999995212 0.981643877 0.000620267 0.162291868 0 0 0.146343659 0.035493551 1.18E-09 8.926479245 -0.018351335 DSMVMHNS(ph)DPNLHLLAEGAPIDWGEEYSNSGGGGSPS(ph)PSTPESATLSEKR ddPTM_HeLa_A486_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 50 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 DS(0.237)MVMHNS(0.763)DPNLHLLAEGAPIDWGEEYSNSGGGGS(0.022)PS(0.313)PS(0.261)T(0.217)PES(0.062)AT(0.062)LS(0.062)EKR 84.903 1.03E-05 200800000 29301 16729 15649 9651.6 25674 14788 19901 24702 18393 23580 TRUE FALSE FALSE 27247.15121 15403.33311 21708.71189 22469.41256 22453.72752 12963.60691 14921.55931 19077.89384 19987.32005 17675.41452 1.541528272 0.871455269 1.228186862 1.27122408 1.270336687 0.733425906 0.84419855 1.079346333 1.130797811 1 14.10945643 -6.234676717 24.92655157 0.955428132 1.217725562 0.361693732 0.184457237 885.864106 825087.9676 0.061435309 0.06141897 5.83E-07 6.234676717 0.26229743 DSMVMHNS(ph)DPNLHLLAEGAPIDWGEEYSNSGGGGSPSPS(ph)TPESATLSEKR ddPTM_HeLa_A486_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 50 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 DS(0.065)MVMHNS(0.935)DPNLHLLAEGAPIDWGEEYSNSGGGGS(0.135)PS(0.307)PS(0.401)T(0.118)PES(0.027)AT(0.006)LS(0.005)EKR 160.11 4.71E-18 102290000 46553 49007 49898 15300 70961 32505 52886 47064 40687 47138 TRUE FALSE FALSE 43289.8751 45123.50684 69219.84191 35619.17322 62060.40969 28494.86359 39653.36343 36348.5546 44213.78192 35334.33798 1.225150309 1.277044071 1.958996429 1.008061145 1.75637675 0.806435474 1.122233094 1.028703428 1.251297872 1 15.10878326 -6.268115088 24.96104755 1.048559142 1.440054877 0.355571054 0.271411501 611.0598605 2284798.964 0.090741473 0.081840586 5.39E-07 6.268115088 0.391495735 DSMVMHNS(ph)DPNLHLLAEGAPIDWGEEYSNSGGGGSPSPST(ph)PESATLSEKR ddPTM_HeLa_A486_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 50 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 DS(0.037)MVMHNS(0.963)DPNLHLLAEGAPIDWGEEYSNSGGGGS(0.109)PS(0.205)PS(0.205)T(0.319)PES(0.062)AT(0.054)LS(0.047)EKR 108.02 1.33E-08 207370000 35818 35094 27186 13026 41839 32058 42167 37711 30792 42780 TRUE FALSE FALSE 33307.34316 32313.02363 37713.14727 30325.1863 36591.16249 28103.0099 31616.3706 29125.02853 33461.07535 32067.60955 1.038659995 1.007653021 1.176051093 0.945664074 1.141062992 0.876367472 0.985928513 0.908238217 1.043453997 1 14.96882919 -6.261515639 24.99999999 0.95850821 1.058702315 0.305894735 0.07436585 8.558677737 2805725.394 0.023782231 0.022314746 5.48E-07 6.261515639 0.100194105 DSMVMHNS(ph)DPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR ddPTM_HeLa_A485_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 50 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 DS(0.007)MVMHNS(0.993)DPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKR 276.61 4.04E-82 398590000 41457 71961 50268 37051 68058 75688 94001 107460 43324 80090 TRUE FALSE FALSE 50678.96663 80376.21297 68864.22503 39075.00231 61281.90655 79650.90664 73916.91843 81105.26651 52018.72941 60125.03695 0.842892898 1.336817689 1.145350232 0.649895689 1.019241063 1.32475439 1.229386661 1.348943313 0.865175841 1 15.87567825 -6.111741057 9.960050909 1.17990816 1.004957029 0.108181064 0.215779342 0.902023314 74.8256885 0.07298475 0.073018215 7.73E-07 6.111741057 -0.174951131 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGS(ph)PSPSTPESATLSEK ddPTM_HeLa_A485_30min_R1 1 DSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEK 49 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 DSMVMHNSDPNLHLLAEGAPIDWGEEY(0.118)S(0.129)NS(0.129)GGGGS(0.404)PS(0.128)PS(0.05)T(0.033)PES(0.007)AT(0.001)LSEK 66.916 0.00020475 113480000 8206.9 19302 25906 6060.4 11163 27023 10145 18791 18520 3232.2 TRUE FALSE FALSE 10032.49659 21559.20099 35489.70744 6391.464306 10051.57252 28437.88249 7977.437873 14182.47779 22236.79412 2426.472024 4.134602209 8.884998788 14.62605259 2.634056458 4.142463801 11.71984767 3.28766942 5.844896477 9.164249125 1 11.24464451 -5.290290675 24.99808413 5.72393485 9.182200607 0.172346613 3.785536306 1333.652608 1155534.945 1.066172903 1.581693346 5.13E-06 5.290290675 3.458265758 DSNAPKS(ph)PLTGYVR ddPTM_HeLa_A485_30min_R1 3 DSNAPKSPLTGYVR 14 1 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 0 DSNAPKS(0.984)PLT(0.016)GYVR;DSNAPKS(1)PLTGYVR;DSNAPKS(0.999)PLT(0.001)GYVR ;; 152.01 2.27E-08 1454790000 661620 876030 623490 863930 1438580 1078440 1707410 1935550 821490 1322750 TRUE FALSE FALSE 808795.0864 978474.0881 854144.8966 911124.3083 1295349.924 1134905.451 1342607.905 1460853.328 986355.5078 993012.7684 0.814486089 0.98535902 0.860154999 0.91753534 1.30446452 1.142891096 1.352055027 1.471132471 0.993295896 1 19.92145274 -5.75205614 23.88271968 1.23787978 0.898436974 0.524244336 0.146198738 84.08980504 214027.6116 0.042099142 0.053543127 1.77E-06 5.75205614 -0.339442806 DSNAPKS(ph)PLTGYVR ddPTM_HeLa_A486_30min_R1 4 DSNAPKSPLTGYVR 14 1 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 0 DSNAPKS(0.999)PLT(0.001)GYVR;DSNAPKS(0.987)PLT(0.013)GYVR;DSNAPKS(0.995)PLT(0.005)GYVR;DSNAPKS(0.803)PLT(0.197)GYVR ;;; 171.14 1.67E-12 1440390000 1173160 1040890 799530 743980 1867970 1313130 2090450 2234060 876930 1639170 TRUE FALSE FALSE 1090927.542 958406.0855 1109129.428 1732023.039 1633671.784 1151129.372 1567397.299 1725413.307 952942.9985 1228711.163 0.887863295 0.780009261 0.902677099 1.409625867 1.329581625 0.936859212 1.275643412 1.404246465 0.775563067 1 20.22871439 -5.086303318 7.228803724 1.180379225 0.835532113 0.330893704 0.198911485 0.271647129 19.73223461 0.053169157 0.093057336 8.20E-06 5.086303318 -0.344847112 DSNELS(ph)DS(ph)AGEEDSADLKR ddPTM_HeLa_A485_30min_R1 2 DSNELSDSAGEEDSADLKR 19 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 2 0 DS(0.171)NELS(0.839)DS(0.99)AGEEDSADLKR;DS(0.001)NELS(0.999)DS(1)AGEEDSADLKR ; 124.28 2.64E-06 813580000 774880 622500 411270 1338120 780960 756220 1121600 1056630 604470 1874990 TRUE FALSE FALSE 947249.3827 695295.96 563415.8874 1411218.107 703204.8803 795814.5099 881960.9974 797489.8358 725781.5845 1407589.5 0.672958546 0.493962167 0.400270027 1.002577888 0.499580936 0.565374003 0.626575431 0.566564212 0.515620204 1 20.42479523 -10.11889776 3.66883369 1.000234163 0.593686909 0.383910365 0.154402138 54566475.81 95846636.27 155831.2494 0.037493964 7.61E-11 10.11889776 -0.406547254 DSNNLCLHFNPR ddPTM_HeLa_A485_30min_R1 4 DSNNLCLHFNPR 12 0 P09382 P09382 LGALS1 Galectin-1 0 0 ;;; ;;; 229.54 2.45E-22 2124200000 1359750 1503980 1487240 1332610 1989360 1778040 2288400 2549560 1349080 1967570 FALSE FALSE TRUE 1662221.696 1679857.378 2037431.965 1405407.11 1791292.333 1871135.425 1799464.645 1924276.412 1619827.982 1477091.009 1.125334652 1.13727412 1.379354388 0.951469545 1.212716293 1.266770573 1.218249 1.30274736 1.096633837 1 20.49432729 -7.999014218 22.5180798 0.99999999 1.198342637 0.256815626 0.109067273 9.583401696 218881.1996 0.103225047 0.026652592 1.00E-08 7.999014218 0.198342647 DSNNLCLHFNPR ddPTM_HeLa_A486_30min_R1 5 DSNNLCLHFNPR 12 0 P09382 P09382 LGALS1 Galectin-1 0 0 ;;;; ;;;; 229.97 1.41E-22 1538679000 871791 1389337 1197754 332864 1713690 1272486 1520023 1453666 1413406 1396412 FALSE FALSE TRUE 810682.9528 1279240.876 1661556.426 774924.214 1498743.021 1115499.615 1139697.168 1122697.985 1535921.17 1046741.346 0.774482594 1.222117461 1.587361034 0.740320631 1.431817924 1.065687927 1.088804959 1.07256486 1.467335914 1 19.99747356 -4.258459364 24.13552577 1.187955928 0.774482343 0.210540994 0.239168053 267.6521725 2167562.998 0.056237339 0.380521424 5.51E-05 4.258459364 -0.413473585 DSPAFPDS(ph)PWR ddPTM_HeLa_A485_30min_R1 6 DSPAFPDSPWR 11 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR ;;;;; 266.97 1.97E-27 1890173000 1072130 1189630 995952 1103430 1261370 1062078 1330120 1248190 995468 1414680 TRUE FALSE FALSE 1310621.62 1328746.88 1364396.09 1163707.587 1135783.574 1117686.762 1045928.996 942069.4454 1195249.297 1062026.311 1.234076412 1.251143089 1.284710252 1.095742709 1.069449562 1.052409672 0.984842828 0.887049064 1.125442264 1 20.01838808 -5.56928922 1.41195853 1.001544577 1.263188818 0.749477782 0.060765213 0.199315625 0.813192088 0.021793277 0.036714257 2.70E-06 5.56928922 0.261644241 DSPAFPDS(ph)PWR ddPTM_HeLa_A486_30min_R1 5 DSPAFPDSPWR 11 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR;DSPAFPDS(1)PWR ;;;; 239.48 9.07E-22 1749030000 1284100 1411610 953528 405901 1256070 1175110 1352550 1271760 1214050 1392140 TRUE FALSE FALSE 1194091.221 1299748.883 1322759.578 944958.0411 1098521.988 1030136.876 1014127.684 982208.0103 1319284.832 1043539.083 1.144270723 1.245520081 1.267570712 0.905532008 1.05268888 0.987156967 0.971815719 0.941227815 1.264240941 1 19.9930532 -5.250767766 24.98247134 1.013369848 1.221760475 0.47927027 0.096216502 590.0809235 1381389.299 0.025470134 0.043531468 5.61E-06 5.250767766 0.208390627 DSPAFPDS(ph)PWRER ddPTM_HeLa_A485_30min_R1 3 DSPAFPDSPWRER 13 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER ;; 199.08 1.01E-21 1139730000 233094 350749 380558 266768 714080 479320 656460 951050 383813 446210 TRUE FALSE FALSE 284944.9561 391766.0444 521342.2405 281340.8603 642983.6879 504416.454 516201.9582 717803.4963 460840.7486 334978.0589 0.850637672 1.169527478 1.556347428 0.839878472 1.91948001 1.505819383 1.541002297 2.142837351 1.37573413 1 18.35370708 -5.762425066 24.999997 1.632213916 1.141074875 0.307303659 0.343709771 31.09069611 788563.1334 0.100478615 0.12058538 1.73E-06 5.762425066 -0.491139041 DSPAFPDS(ph)PWRER ddPTM_HeLa_A486_30min_R1 3 DSPAFPDSPWRER 13 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER ;; 164.01 3.82E-12 1067070000 232857 276525 319024 144412 557502 310030 446819 472782 274073 273045 TRUE FALSE FALSE 216534.9268 254612.1519 442558.6366 336198.4342 487574.9007 271781.6508 335020.1602 365139.8594 297829.8683 204672.7548 1.057956771 1.243996311 2.162274295 1.642614497 2.382216926 1.327883875 1.63685763 1.784017906 1.455151511 1 17.64295954 -8.072423217 4.441730865 1.000176175 1.669085441 0.214777547 0.379196824 0.546281462 27.38413422 0.373355061 0.097663604 8.46E-09 8.072423217 0.668909266 DSPDS(ph)PEPPNKKPLVEMDETPQVEK ddPTM_HeLa_A485_30min_R1 2 DSPDSPEPPNKKPLVEMDETPQVEK 25 2 H0YH12;Q9NVM9-2;Q9NVM9 H0YH12 ASUN Protein asunder homolog 1 0 DS(0.002)PDS(0.998)PEPPNKKPLVEMDETPQVEK;DS(0.045)PDS(0.955)PEPPNKKPLVEMDETPQVEK ; 134.15 1.53E-06 1040030000 936580 483870 204394 1390130 484790 611750 1128550 786900 422630 1628330 TRUE FALSE FALSE 1144918.99 540454.3874 280007.8461 1466069.282 436522.6054 643780.2841 887426.0731 593911.5412 507447.9644 1222417.298 0.936602412 0.442119388 0.229060769 1.19931981 0.357097863 0.526645267 0.725960009 0.485850079 0.415118442 1 20.22130543 -10.22356954 4.498705847 1.00013311 0.585863979 0.164876463 0.276032797 364518748.6 119.4937588 502613.634 0.064429235 5.98E-11 10.22356954 -0.414269131 DSPS(ph)KSSAEAQTPEDTPNK ddPTM_HeLa_A486_30min_R1 1 DSPSKSSAEAQTPEDTPNK 19 1 A0A5F9UY30;A0A5H1ZRP2;O43493-4;O43493;O43493-5;O43493-3;O43493-7 A0A5F9UY30 TGOLN2 Trans-Golgi network integral membrane protein 2 1 0 DS(0.069)PS(0.31)KS(0.31)S(0.31)AEAQT(0.001)PEDTPNK 69.765 0.00070942 0 70852 72853 44569 25812 79432 91823 96142 86701 70040 93440 TRUE FALSE FALSE 65885.64068 67079.86295 61827.3104 60091.64047 69468.89789 80494.81185 72086.25471 66961.07497 76111.12359 70042.01581 0.940658831 0.957708915 0.882717462 0.857937051 0.991817512 1.149236082 1.029185895 0.956012962 1.086649531 1 16.09593298 -5.975119555 8.059523166 1.043849542 0.912577675 0.57668448 0.054313727 0.154841144 40.96892659 0.017667508 0.019852588 1.06E-06 5.975119555 -0.131271868 DSPSVWAAVPGK ddPTM_HeLa_A485_30min_R1 3 DSPSVWAAVPGK 12 0 P07737;I3L3D5;CON__P02584 P07737 PFN1 Profilin-1 0 0 ;; ;; 193.82 1.24E-13 90075000 417365 302275 220898 587488 424171 378996 642741 555510 305204 748818 FALSE FALSE TRUE 510206.4044 337623.4318 302617.3625 619580.9818 381939.0459 398839.6445 505414.1346 419270.3015 366455.6433 562151.4536 0.907595989 0.600591584 0.538319986 1.102160242 0.679423745 0.709487883 0.899071116 0.745831571 0.651880629 1 19.10059934 -11.25683086 2.376077219 1.985811954 0.758175716 0.170369656 0.15927837 30276560.82 8007865.811 158659261.7 0.041154038 5.54E-12 11.25683086 -1.227636238 DSPSVWAAVPGK ddPTM_HeLa_A486_30min_R1 1 DSPSVWAAVPGK 12 0 P07737;I3L3D5;CON__P02584 P07737 PFN1 Profilin-1 0 0 129.85 0.0013347 145040000 350420 341570 194150 243180 494480 403540 513230 463280 289650 530210 FALSE FALSE TRUE 325857.3676 314502.7492 269330.0795 566135.3296 432457.7076 353755.3377 384814.4256 357801.2573 314757.0952 397441.9649 0.819886666 0.791317417 0.677658887 1.424447793 1.088102782 0.890080487 0.968227967 0.900260387 0.791957375 1 18.60038469 DSQDASAEQS(ph)DHDDEVASLASASGGFGTK ddPTM_HeLa_A485_30min_R1 2 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 DSQDAS(0.106)AEQS(0.894)DHDDEVASLASASGGFGTK;DSQDAS(0.012)AEQS(0.988)DHDDEVASLASASGGFGTK ; 194.63 2.30E-21 7017700000 143995 128228 132124 177582 185919 160769 188977 187231 139584 246444 TRUE FALSE FALSE 176026.191 143223.1492 181002.1657 187282.855 167408.2516 169186.6162 148600.5201 141312.3037 167597.2285 185010.0463 0.951441257 0.774137146 0.978336957 1.012284785 0.90486033 0.91447259 0.803202438 0.763808812 0.905881772 1 17.49724409 -6.647665855 7.750110244 0.848747339 0.922320144 0.074584809 0.083538081 0.475437228 30.42773374 0.032303629 0.024940998 2.25E-07 6.647665855 0.073572804 DSQDASAEQS(ph)DHDDEVASLASASGGFGTK ddPTM_HeLa_A486_30min_R1 5 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 DSQDAS(0.003)AEQS(0.997)DHDDEVASLASASGGFGTK;DSQDASAEQS(1)DHDDEVASLASASGGFGTK;DSQDASAEQS(1)DHDDEVASLASASGGFGTK;DS(0.002)QDAS(0.38)AEQS(0.619)DHDDEVASLASASGGFGTK;DSQDAS(0.002)AEQS(0.998)DHDDEVASLASASGGFGTK ;;;; 334.18 5.91E-127 11593200000 2512450 2829060 1685047 1015590 2713390 2750500 3414350 3210590 2156400 2970560 TRUE FALSE FALSE 2336340.229 2604874.982 2337542.326 2364344.845 2373051.325 2411171.275 2560043.517 2479608.744 2343318.488 2226712.441 1.049233025 1.169829985 1.049772877 1.061809689 1.065719705 1.082839091 1.149696508 1.113573849 1.052366909 1 21.08648383 -8.020831211 4.559762824 1.00009744 1.093329394 0.357791624 0.038945966 0.194952689 13.43435833 0.038139626 0.009970801 9.53E-09 8.020831211 0.093231954 DSQDASAEQS(ph)DHDDEVASLASASGGFGTKVPAPR ddPTM_HeLa_A485_30min_R1 6 DSQDASAEQSDHDDEVASLASASGGFGTKVPAPR 34 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR;DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR;DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR;DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR;DS(0.024)QDAS(0.206)AEQS(0.77)DHDDEVASLASASGGFGTKVPAPR;DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR ;;;;; 244.5 3.20E-51 4523520000 925904 2478450 1136491 511785 1887310 2722430 3201730 6162490 1124963 913460 TRUE FALSE FALSE 1131868.15 2768283.168 1556926.314 539742.5186 1699402.79 2864972.225 2517654.23 4651129.665 1350732.755 685751.233 1.650552119 4.036862108 2.270395209 0.787082097 2.478162208 4.177859386 3.671381266 6.782531976 1.969712471 1 19.38732579 -6.205002145 5.926240859 3.890395462 2.251968001 0.114741875 1.620576972 0.375785568 29.04936187 0.528353321 0.524784012 6.24E-07 6.205002145 -1.63842746 DSQDASAEQS(ph)DHDDEVASLASASGGFGTKVPAPR ddPTM_HeLa_A486_30min_R1 3 DSQDASAEQSDHDDEVASLASASGGFGTKVPAPR 34 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR;DSQDASAEQS(1)DHDDEVASLASASGGFGTKVPAPR;DSQDAS(0.004)AEQS(0.996)DHDDEVASLASASGGFGTKVPAPR ;; 281.7 2.03E-78 1174110000 787602 397839 343793 229388 880076 360988 622775 763858 292679 749072 TRUE FALSE FALSE 732395.167 366312.7887 476918.8567 534026.8566 769688.6617 316452.9708 466950.108 589944.2083 318048.6514 561499.4956 1.304355877 0.652383113 0.849366492 0.951072727 1.370773559 0.563585494 0.831612694 1.050658483 0.566427315 1 19.0989252 -6.294548036 24.99918919 0.807445283 0.990926889 0.166330059 0.243543075 1481.658537 1118743.995 0.085591454 0.07548921 5.08E-07 6.294548036 0.183481605 DSQQTLINIPS(ph)LNDSDSEIEDISEIESNR ddPTM_HeLa_A486_30min_R1 1 DSQQTLINIPSLNDSDSEIEDISEIESNR 29 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 DSQQTLINIPS(0.38)LNDS(0.308)DS(0.308)EIEDIS(0.003)EIESNR 77.522 0.0027536 32438000 35102 32875 29549 12851 40909 32931 34502 41293 33821 43395 TRUE FALSE FALSE 32641.53107 30269.86527 40991.16415 29917.77745 35777.81176 28868.30804 25869.23468 31891.48532 36752.63151 32528.60955 1.003471452 0.930561303 1.260157281 0.91973736 1.099887522 0.887474394 0.795276375 0.98041342 1.129855596 1 14.98942153 -6.260858222 24.99768733 0.947171823 1.04177226 0.106055538 0.119875746 119.4049237 5136081.186 0.041595212 0.039257966 5.48E-07 6.260858222 0.094600437 DSQQTLINIPSLNDS(ph)DSEIEDISEIESNR ddPTM_HeLa_A486_30min_R1 1 DSQQTLINIPSLNDSDSEIEDISEIESNR 29 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 DSQQTLINIPS(0.136)LNDS(0.429)DS(0.429)EIEDIS(0.006)EIESNR 60.993 0.012099 28386000 41583 41015 33076 14883 51266 42846 47672 44565 38826 47062 TRUE FALSE FALSE 38668.24643 37764.82203 45883.91301 34648.37615 44835.74024 37560.09615 35743.96138 34418.52235 42191.46894 35277.36888 1.096120478 1.0705113 1.300661429 0.982170078 1.270949101 1.06470798 1.013226397 0.975654462 1.19599251 1 15.10645534 -6.500001698 24.62448042 1.043443474 1.142511857 0.175511541 0.102576851 1086.766223 1169780.161 0.034519334 0.030216785 3.16E-07 6.500001698 0.099068384 DSQS(ph)PDSAWR ddPTM_HeLa_A485_30min_R1 2 DSQSPDSAWR 10 0 O94875-11;O94875-9;O94875-8;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9IZT7;C9JDX2;C9JI79;C9JBB0;C9J620;C9JM25;C9JFS9;C9JC90;O94875-12 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DS(0.001)QS(0.999)PDSAWR;DS(0.001)QS(0.999)PDSAWR ; 207.12 5.22E-14 1475150000 942580 1189670 1029440 1182120 1480320 1249470 1707840 2183860 1052490 1564440 TRUE FALSE FALSE 1152253.669 1328791.558 1410272.695 1246696.222 1332934.143 1314890.317 1342946.032 1648264.911 1263715.089 1174453.899 0.981097402 1.131412275 1.200790168 1.061511416 1.134939519 1.11957593 1.143464237 1.403430915 1.076002293 1 20.16355865 -7.009568133 24.8964044 1.198519464 1.111653055 0.012906677 0.111762687 976.3051144 2540351.289 0.046839937 0.029579746 9.78E-08 7.009568133 -0.086866409 DSQS(ph)PDSAWR ddPTM_HeLa_A486_30min_R1 1 DSQSPDSAWR 10 0 O94875-11;O94875-9;O94875-8;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9IZT7;C9JDX2;C9JI79;C9JBB0;C9J620;C9JM25;C9JFS9;C9JC90;O94875-12 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DS(0.026)QS(0.973)PDS(0.001)AWR 119.21 0.00012773 762510000 431450 620890 762430 126810 817110 450420 456830 505440 535330 458810 TRUE FALSE FALSE 401207.583 571688.4152 1057663.315 295220.0886 714620.4446 394851.7599 342526.3021 390362.3457 581732.8354 343920.9896 1.166569052 1.662266719 3.075309 0.858395089 2.077862259 1.148088578 0.995944744 1.135034957 1.691472323 1 18.39171764 -6.277844079 23.91616155 1.190162509 1.784287616 0.197701731 0.577638974 786.6836681 1146889.737 0.202390762 0.179086363 5.27E-07 6.277844079 0.594125108 DSS(ph)FER ddPTM_HeLa_A485_30min_R1 2 DSSFER 6 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DS(0.484)S(0.516)FER;DS(0.243)S(0.757)FER ; 101.43 0.011602 729220000 1207290 1189060 977460 1691610 1466980 1174410 1672510 1528900 1157130 1999770 TRUE FALSE FALSE 1475847.495 1328110.224 1339063.13 1784018.371 1320922.32 1235900.292 1315164.575 1153934.878 1389355.377 1501264.142 0.983069837 0.884661257 0.891957046 1.18834409 0.879873357 0.823239733 0.876038093 0.768642137 0.925456979 1 20.51774641 -5.969317011 24.99999567 0.862662231 0.980558279 0.221387019 0.096749851 286.3277239 233293.9236 0.029930876 0.033938134 1.07E-06 5.969317011 0.117896048 DSS(ph)FER ddPTM_HeLa_A486_30min_R1 2 DSSFER 6 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DS(0.014)S(0.986)FER;DS(0.076)S(0.924)FER ; 127.56 0.0055088 670780000 898820 916570 615170 385360 863570 946590 1134020 1017260 842300 1215300 TRUE FALSE FALSE 835817.3595 843937.6551 853380.2988 897137.555 755252.9981 829809.35 850276.2016 785652.1046 915311.2422 910980.9697 0.917491569 0.926405362 0.93677072 0.984803838 0.829054638 0.910896471 0.933363297 0.862424277 1.004753417 1 19.79706139 -7.78341334 24.99139023 1.002376871 0.914164163 0.446066526 0.039966451 254.0645524 288944.1343 0.038476323 0.009966881 1.65E-08 7.78341334 -0.088212708 DSS(ph)FERR ddPTM_HeLa_A486_30min_R1 2 DSSFERR 7 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 DS(0.166)S(0.834)FERR;DS(0.469)S(0.531)FERR ; 88.181 0.0042452 808000000 203595 195670 219490 70062 284530 220250 224099 248090 207730 210243 TRUE FALSE FALSE 189324.0419 180164.3966 304482.4061 163107.8767 248841.5943 193077.7943 168027.0599 191605.3228 225736.2037 157596.7843 1.201319193 1.143198431 1.932034384 1.034969574 1.578976343 1.225137906 1.066183302 1.215794621 1.432365543 1 17.26587857 -6.496597572 24.10669767 1.189296134 1.37929055 0.121655835 0.257321801 1081.88798 992375.7206 0.088802107 0.078013719 3.19E-07 6.496597572 0.189994417 DSS(ph)PSRDFLPALGSMRPPIIIHR ddPTM_HeLa_A485_30min_R1 1 DSSPSRDFLPALGSMRPPIIIHR 23 2 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 DS(0.135)S(0.86)PS(0.005)RDFLPALGSMRPPIIIHR 145.67 8.75E-10 158450000 61461 54672 46399 57971 57628 50041 61324 64430 47418 70009 TRUE FALSE FALSE 75132.78741 61065.41482 63563.92092 61137.80894 51890.35398 52661.06938 48221.62643 48628.44148 56934.35766 52557.04472 1.429547415 1.16188829 1.209427228 1.163265729 0.987314912 1.001979272 0.917510235 0.925250682 1.083286893 1 15.68159653 -4.088205533 0.518867062 0.963698485 1.75602149 0.802666859 0.066393121 2.19143198 0.397633562 0.040483805 1.098794044 8.16E-05 4.088205533 0.792323005 DS(ph)SQEYTDSTGIDLHEFLVNTLK ddPTM_HeLa_A485_30min_R1 2 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C2F9;Q15032-2;Q15032-4;Q15032;Q15032-3 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 0 DS(0.5)S(0.5)QEYTDSTGIDLHEFLVNTLK;DS(0.251)S(0.251)QEY(0.227)T(0.251)DS(0.01)T(0.01)GIDLHEFLVNTLK ; 172.06 9.03E-15 64970000 40997.6 43134 29457.1 71420 62218 51317 83844 90197 66483 134079 TRUE FALSE FALSE 50117.37468 48178.14608 40354.5071 75321.49375 56023.35746 54003.87877 65930.04446 68076.04433 79825.52828 100655.5728 0.497909587 0.478643603 0.40091677 0.748309225 0.556584756 0.536521498 0.655006401 0.67632663 0.793056222 1 16.61906752 -8.455376593 0.214109022 1.176160788 0.398363289 0.774546227 0.080444104 2.596049016 0.31040145 0.622567779 0.271240184 3.50E-09 8.455376593 -0.777797499 DSS(ph)QEYTDSTGIDLHEFLVNTLK ddPTM_HeLa_A486_30min_R1 1 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C2F9;Q15032-2;Q15032-4;Q15032;Q15032-3 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 0 DS(0.039)S(0.961)QEYTDSTGIDLHEFLVNTLK 340.49 4.00E-123 95027000 90562 91176 33959 46421 77200 139410 165280 171080 75921 157050 TRUE FALSE FALSE 84214.07146 83950.8817 47108.83425 108070.434 67516.85614 122211.0116 123925.1958 132128.8187 82501.89341 117723.6578 0.715353847 0.71311819 0.400164548 0.918000987 0.573519864 1.03811769 1.052678775 1.122364197 0.700809803 1 16.84504475 -6.266715729 24.92689798 0.99480966 0.666208665 0.497970131 0.159794641 352.6766931 1666134.502 0.053979405 0.049012447 5.41E-07 6.266715729 -0.328600995 DSS(ph)TSPGDYVLSVSENSR ddPTM_HeLa_A485_30min_R1 4 DSSTSPGDYVLSVSENSR 18 0 P46108-2;I3L297;P46108 P46108-2 CRK Adapter molecule crk 1 0 DS(0.115)S(0.864)T(0.021)SPGDYVLSVSENSR;DSS(0.995)T(0.004)SPGDYVLSVSENSR;DS(0.199)S(0.759)T(0.04)S(0.002)PGDYVLSVSENSR;DS(0.001)S(0.997)T(0.001)S(0.001)PGDYVLSVSENSR ;;; 384.31 3.03E-145 936860000 534521 525700 514343 803854 605408 448657 683287 480196 494387 1020126 TRUE FALSE FALSE 653423.3524 587176.042 704619.8793 847766.5086 545131.4538 472147.9868 537297.1505 362427.1781 593605.9361 765827.3622 0.853225393 0.766721158 0.920076657 1.106994279 0.711820288 0.616520132 0.701590433 0.473249189 0.775117168 1 19.54665968 -5.969004742 24.23174055 0.677922782 0.902916798 0.283986645 0.149118333 160.9250985 125808.3483 0.045289998 0.051353435 1.07E-06 5.969004742 0.224994016 DSS(ph)TSPGDYVLSVSENSR ddPTM_HeLa_A486_30min_R1 4 DSSTSPGDYVLSVSENSR 18 0 P46108-2;I3L297;P46108 P46108-2 CRK Adapter molecule crk 1 0 DSS(0.884)T(0.058)S(0.058)PGDYVLSVSENSR;DSS(0.999)T(0.001)SPGDYVLSVSENSR;DSS(0.976)T(0.023)SPGDYVLSVSENSR;DS(0.161)S(0.802)T(0.036)S(0.002)PGDYVLSVSENSR ;;; 419.96 4.20E-182 1288285000 885183 1085825 721487 343238 941023 1041230 1067956 1059182 1022879 1172550 TRUE FALSE FALSE 823136.2428 999780.2725 1000866.088 799075.4103 822991.1206 912773.6291 800742.1131 818029.3804 1111542.975 878935.848 0.936514587 1.137489471 1.138724846 0.909139628 0.936349476 1.038498579 0.911035902 0.930704308 1.264646308 1 19.74539834 -5.252859412 24.92602178 0.991154619 1.077567611 0.077632373 0.1114215 1431.280938 4158065.39 0.030133163 0.051176017 5.59E-06 5.252859412 0.086412993 DSS(ph)VEVR ddPTM_HeLa_A486_30min_R1 2 DSSVEVR 7 0 B0QYA6;B0QYA5;O15371-2;O15371-3;O15371 B0QYA6 EIF3D Eukaryotic translation initiation factor 3 subunit D 1 0 DS(0.009)S(0.991)VEVR;DS(0.059)S(0.941)VEVR ; 161.79 0.00032665 2730300000 4168200 4491600 3099100 1888140 4462800 4434300 5282300 5077600 3843400 5570000 TRUE FALSE FALSE 3876030.705 4135669.258 4299154.517 4395685.341 3903034.01 3887241.151 3960612.67 3921541.323 4176549.007 4175235.745 0.928338168 0.990523532 1.029679467 1.052799317 0.934805661 0.931023154 0.948596178 0.9392383 1.000314536 1 21.99342623 -5.789470172 24.98232787 0.954039553 1.001730385 0.216232887 0.037819771 299.5846791 267001.9602 0.012189025 0.013823419 1.62E-06 5.789470172 0.047690832 DSSDSADGRAT(ph)PSENLVPSSAR ddPTM_HeLa_A485_30min_R1 3 DSSDSADGRATPSENLVPSSAR 22 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 DSSDS(0.006)ADGRAT(0.994)PSENLVPSSAR;DSSDSADGRAT(1)PSENLVPSSAR;DSSDS(0.001)ADGRAT(0.998)PS(0.001)ENLVPSSAR ;; 157.11 4.31E-10 4841100000 1857860 2210420 2057180 1904250 2667770 2314550 2773490 3072910 1778760 2402270 TRUE FALSE FALSE 2271134.547 2468909.391 2818216.488 2008274.356 2402157.452 2435736.259 2180911.204 2319274.004 2135740.816 1803428.3 1.259342857 1.369008899 1.562699493 1.113587025 1.331994986 1.350614416 1.209314063 1.28603616 1.184267108 1 20.78231064 -8.890155944 0.279153024 0.903221547 1.377049467 0.462697053 0.107349409 4.976337343 0.648959726 0.678504442 0.163579284 1.29E-09 8.890155944 0.47382792 DSSDSADGRAT(ph)PSENLVPSSAR ddPTM_HeLa_A486_30min_R1 3 DSSDSADGRATPSENLVPSSAR 22 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 DSSDS(0.003)ADGRAT(0.996)PS(0.001)ENLVPSSAR;DSSDS(0.013)ADGRAT(0.986)PS(0.002)ENLVPSSAR;DSSDS(0.001)ADGRAT(0.999)PSENLVPSSAR ;; 146.8 2.01E-09 2792160000 1450410 1515810 1189280 543120 1852010 1381860 1654190 1656000 1262770 1490280 TRUE FALSE FALSE 1348743.749 1395691.695 1649801.066 1264410.808 1619713.636 1211380.163 1240294.166 1278964.95 1372227.92 1117104.188 1.207357168 1.249383639 1.476855144 1.13186471 1.44992173 1.08439318 1.110276176 1.144893166 1.228379533 1 20.09133232 -6.28717295 24.90816386 1.122437203 1.300236167 0.42376197 0.110215989 753.4356073 729266.4625 0.037174284 0.032796307 5.16E-07 6.28717295 0.177798964 DSSFTEVPRS(ph)PK ddPTM_HeLa_A485_30min_R1 6 DSSFTEVPRSPK 12 1 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK ;;;;; 154.46 3.53E-08 11984180000 6488060 5776110 4240940 10396280 7824820 7161390 12124340 11261570 5420030 14419290 TRUE FALSE FALSE 7931306.563 6451575.819 5809840.186 10964202.45 7045753.446 7536349.307 9533875.712 8499652.3 6507780.306 10824826.37 0.732695961 0.595998088 0.5367144 1.012875595 0.650888357 0.696209717 0.880741675 0.785199874 0.601190272 1 23.36784055 -14 0.164136249 1.984380437 0.658165913 0.259506205 0.137224668 191.0391912 1.774714981 61.91413512 0.554193519 1.00E-14 14 -1.326214524 DSSFTEVPRS(ph)PK ddPTM_HeLa_A486_30min_R1 6 DSSFTEVPRSPK 12 1 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK;DSSFTEVPRS(1)PK ;;;;; 138.01 4.44E-06 13114150000 10179460 9749560 4834270 6144930 9161440 11633280 15704450 14312250 7897920 18355700 TRUE FALSE FALSE 9465932.421 8976969.358 6706228.81 14305707.59 8012326.768 10198084.19 11775030.51 11053663.11 8582518.065 13759313.24 0.687965471 0.652428591 0.487395606 1.039710873 0.582320253 0.741176831 0.855786208 0.803358635 0.623760642 1 23.71390513 -14 0.117420838 1.8448084 0.589653079 0.250528282 0.146627166 226.5586619 1.733487481 46.22108401 1.49342248 1.00E-14 14 -1.255155321 DSSGSFS(ph)PCQPFLEK ddPTM_HeLa_A485_30min_R1 1 DSSGSFSPCQPFLEK 15 0 H3BMJ2;Q6ZRI6-2;Q6ZRI6 H3BMJ2 C15orf39 Uncharacterized protein C15orf39 1 0 DSSGS(0.005)FS(0.995)PCQPFLEK 124.25 3.27E-05 0 47785 57924 45540 74109 62121 48462 58691 63671 48339 65065 TRUE FALSE FALSE 58414.60839 64697.70793 62387.14108 78157.38702 55936.01512 50999.39538 46151.18839 48055.58742 58040.19391 48845.49293 1.195905802 1.324537927 1.277234343 1.60009414 1.145162261 1.044096237 0.944840263 0.983828487 1.18824052 1 15.57593783 -5.989730191 24.83765771 1.033385742 1.346271646 0.637081827 0.113039726 127.8005796 309084.9294 0.03557322 0.040294081 1.02E-06 5.989730191 0.312885903 DSSGSVS(ph)PNTLSQEEGDQICLYHIR ddPTM_HeLa_A486_30min_R1 3 DSSGSVSPNTLSQEEGDQICLYHIR 25 0 H7C4T3;H7C4L8;G5E9U9;Q9H0J9 H7C4T3 PARP12 Poly [ADP-ribose] polymerase 12 1 0 DS(0.012)S(0.012)GS(0.012)VS(0.848)PNT(0.103)LS(0.012)QEEGDQICLYHIR;DSSGS(0.003)VS(0.985)PNT(0.012)LSQEEGDQICLYHIR;DS(0.026)S(0.026)GS(0.024)VS(0.758)PNT(0.142)LS(0.024)QEEGDQICLYHIR ;; 321.22 7.32E-106 586400000 184156 277742 192280 81967 315524 258300 269855 274167 230468 208198 TRUE FALSE FALSE 171247.6154 255732.7124 266735.9654 190823.3184 275948.0378 226433.5722 202334.4248 211745.1591 250445.1518 156063.8657 1.097291898 1.638641407 1.709146216 1.222725822 1.768173796 1.450903265 1.296484769 1.356785302 1.604760658 1 17.25177702 -11.04671896 2.618883552 0.380940863 1.466988234 0.304278688 0.208713593 16453049.59 4152546.296 61195853.49 0.051426182 8.98E-12 11.04671896 1.086047372 DSSKGEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_HeLa_A486_30min_R1 1 DSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 45 2 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 DS(0.279)S(0.279)KGEDS(0.329)AEET(0.114)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 176.95 1.72E-17 614500000 610040 403930 121050 532610 323020 719880 1112800 998630 382930 1393000 TRUE FALSE FALSE 567279.3462 371921.1157 167923.8018 1239942.997 282503.8196 631068.5248 834365.67 771263.7489 416122.6807 1044183.733 0.543275411 0.356183595 0.160818251 1.187475879 0.270549914 0.604365405 0.799060207 0.738628389 0.398514809 1 19.99394416 -14 0.065088265 2.442360052 8.39E-12 0.191850705 0.27974066 589.207584 2.775775999 132.8884454 19.05657275 1.00E-14 14 -2.442360052 DSSKGEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK ddPTM_HeLa_A486_30min_R1 1 DSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK 49 2 Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 0 DS(0.087)S(0.087)KGEDS(0.301)AEET(0.525)EAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK 206.8 2.08E-33 1036700000 894190 653010 198920 774090 582030 1135900 1728700 1496500 593100 2087600 TRUE FALSE FALSE 831511.8986 601263.1094 275947.1513 1802120.64 509026.3702 995764.207 1296160.976 1155779.618 644510.3855 1564851.372 0.531367971 0.38423017 0.176340805 1.151624156 0.325287359 0.636331491 0.828296539 0.738587472 0.411866837 1 20.57759421 -10.95896698 0.071958031 1.902596665 3.44E-17 0.208046753 0.263266291 228.777034 2.335730434 52.57646925 16.69220402 1.10E-11 10.95896698 -1.902596665 DSSPASGTDRDS(ph)PEPLLK ddPTM_HeLa_A485_30min_R1 3 DSSPASGTDRDSPEPLLK 18 1 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 1 0 DSSPASGTDRDS(1)PEPLLK;DSSPASGTDRDS(1)PEPLLK;DSSPASGTDRDS(1)PEPLLK ;; 189.09 2.42E-18 1217760000 1045160 896400 760020 1205650 1286290 1122510 1542750 1685980 962650 1953090 TRUE FALSE FALSE 1277652.236 1001226.182 1041183.025 1271511.607 1158222.451 1181282.888 1213128.859 1272490.761 1155845.025 1466220.607 0.871391542 0.682861895 0.710113485 0.867203476 0.789937371 0.805665179 0.827384947 0.867871284 0.788315905 1 20.48367076 -14 0.150458896 1.732659884 0.736402634 0.516760577 0.059230628 105.2680574 0.938191132 22.9317744 0.297773781 1.00E-14 14 -0.99625725 DSSPASGTDRDS(ph)PEPLLK ddPTM_HeLa_A486_30min_R1 4 DSSPASGTDRDSPEPLLK 18 1 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 1 0 DSSPASGTDRDS(1)PEPLLK;DSSPASGTDRDS(1)PEPLLK;DSSPASGTDRDS(1)PEPLLK;DSSPASGTDRDS(1)PEPLLK ;;; 181.75 4.69E-18 1449980000 1237870 1338950 900350 589520 1379500 1602110 1806370 1682350 1301070 1766680 TRUE FALSE FALSE 1151101.705 1232846.726 1248989.632 1372432.353 1206470.247 1404457.957 1354397.12 1299315.63 1413847.795 1324291.829 0.869220575 0.930947922 0.943137762 1.0363519 0.9110305 1.060535093 1.022733125 0.981139959 1.067625552 1 20.33678965 -2.702541719 0.433154296 1.023787741 0.312276244 0.562458351 0.041996409 13.44742545 0.678104589 0.027148747 6.554401524 0.001983619 2.702541719 -0.711511498 DSSQEYTDST(ph)GIDLHEFLVNTLK ddPTM_HeLa_A485_30min_R1 1 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C2F9;Q15032-2;Q15032-4;Q15032;Q15032-3 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 0 DS(0.137)S(0.137)QEY(0.03)T(0.164)DS(0.24)T(0.292)GIDLHEFLVNTLK 65.581 0.015444 19164000 16777 13474 11747 25976 19842 19751 33093 28187 24225 50150 TRUE FALSE FALSE 20508.98577 15049.66709 16092.70413 27395.00311 17866.46081 20785.13182 26022.41021 21274.09405 29086.7353 37648.52794 0.544748677 0.399741183 0.427445773 0.727651375 0.474559346 0.55208352 0.691193298 0.565071072 0.772586257 1 15.20030584 -9.758984496 0.183328541 1.363172939 0.389971688 0.718995573 0.092452394 9.616177799 0.429603682 2.14165208 0.369553697 1.74E-10 9.758984496 -0.973201251 DSSSLSSCTSGILEERS(ph)PAFR ddPTM_HeLa_A486_30min_R1 1 DSSSLSSCTSGILEERSPAFR 21 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DSSSLSSCTSGILEERS(1)PAFR 192.01 6.51E-20 252570000 77393 88405 90093 37004 125800 106630 103920 99137 79315 96331 TRUE FALSE FALSE 71968.15036 81399.46583 124979.4224 86147.18208 110020.991 93475.07473 77918.11685 76565.66925 86190.08806 72209.09059 0.996663298 1.127274491 1.730799008 1.193024055 1.5236446 1.294505636 1.079062431 1.060332828 1.193618246 1 16.13989285 -6.725981938 5.47454699 1.087499115 1.327885804 0.24075982 0.197225115 0.277366223 21.02911824 0.080243326 0.059808838 1.88E-07 6.725981938 0.240386689 DSSSLSSCTSGILEERS(ph)PAFRGPDR ddPTM_HeLa_A485_30min_R1 1 DSSSLSSCTSGILEERSPAFRGPDR 25 2 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DSSSLSSCTSGILEERS(1)PAFRGPDR 141.98 2.62E-09 138960000 38289 52466 42831 48827 61192 57073 64592 91807 43701 68917 TRUE FALSE FALSE 46806.25595 58601.44231 58675.96925 51494.29537 55099.50962 60061.25403 50791.39153 69291.1893 52471.38985 51737.26022 0.90469143 1.132673861 1.13411435 0.995303871 1.064987001 1.16088973 0.981717843 1.339289885 1.014189573 1 15.65891604 -6.025537151 21.88618738 1.11306369 1.051714369 0.044081046 0.114638094 490.0121592 419955.3632 0.036242335 0.036453524 9.43E-07 6.025537151 -0.061349321 DSSSLSSCTSGILEERS(ph)PAFRGPDR ddPTM_HeLa_A486_30min_R1 3 DSSSLSSCTSGILEERSPAFRGPDR 25 2 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DSSSLSSCTSGILEERS(1)PAFRGPDR;DSSSLSSCTSGILEERS(1)PAFRGPDR;DSSSLSSCTS(0.001)GILEERS(0.998)PAFRGPDR ;; 263.15 4.45E-62 1045330000 326845 343016 331951 168735 563920 384834 507900 526330 293702 453560 TRUE FALSE FALSE 303934.8533 315834.1629 460491.3172 392823.6074 493187.8953 337357.0938 380818.048 406496.1487 319160.3258 339985.6238 0.893963839 0.928963288 1.354443497 1.155412405 1.450613969 0.992268702 1.120100443 1.195627463 0.938746534 1 18.37511422 -7.765973293 24.99848405 0.969373188 1.142532774 0.138808295 0.165880099 244.8918002 1350168.901 0.14771736 0.043184428 1.71E-08 7.765973293 0.173159586 DSSSSLTDPQVSYVKS(ph)PAAER ddPTM_HeLa_A485_30min_R1 2 DSSSSLTDPQVSYVKSPAAER 21 1 O94887-3;O94887-2;O94887;H7C3M7 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSSSLTDPQVS(0.002)YVKS(0.998)PAAER;DSSSSLTDPQVSYVKS(1)PAAER ; 257.71 3.78E-59 1544620000 1222520 1145750 894370 1710900 1699950 1570120 2241960 2179580 1332480 2818470 TRUE FALSE FALSE 1494465.356 1279735.496 1225234.681 1804362.135 1530697.009 1652329.055 1762946.931 1645034.588 1599896.514 2115877.299 0.706310029 0.604825004 0.579066982 0.852772576 0.723433731 0.780919128 0.833199038 0.777471637 0.756138607 1 21.01282454 -13.91154969 0.040536198 2.271648037 3.27E-10 0.629796447 0.07025834 530.8432616 1.626061044 82.04666554 24.63883152 1.23E-14 13.91154969 -2.271648036 DSSSSLTDPQVSYVKS(ph)PAAER ddPTM_HeLa_A486_30min_R1 4 DSSSSLTDPQVSYVKSPAAER 21 1 O94887-3;O94887-2;O94887;H7C3M7 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSSSLTDPQVS(0.019)YVKS(0.981)PAAER;DSSSSLTDPQVSYVKS(1)PAAER;DSSSSLTDPQVSYVKS(1)PAAER;DSSSSLTDPQVS(0.323)Y(0.002)VKS(0.674)PAAER ;;; 253.74 4.92E-59 2722050000 2793010 3037950 2075562 1562087 4079560 3863230 4836970 4411630 3036960 4626940 TRUE FALSE FALSE 2597234.422 2797211.778 2879275.192 3636617.48 3567863.544 3386623.961 3626708.946 3407198.154 3300206.138 3468324.108 0.748844209 0.806502418 0.830163244 1.048522966 1.028699578 0.976443912 1.045666101 0.98237594 0.951527607 1 21.72580729 -5.14529133 4.143719545 1.0053097 0.785848036 0.897789193 0.032612662 0.068789899 1.995177809 0.009431345 0.017183989 7.16E-06 5.14529133 -0.219461664 DSSSSLTDPQVSYVKS(ph)PAAERR ddPTM_HeLa_A485_30min_R1 2 DSSSSLTDPQVSYVKSPAAERR 22 2 O94887-3;O94887-2;O94887;H7C3M7 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSSSLTDPQVS(0.04)Y(0.001)VKS(0.959)PAAERR;DSSSSLTDPQVS(0.281)YVKS(0.719)PAAERR ; 147.41 7.22E-10 1028800000 538690 864090 505950 522630 1062840 1170040 1526580 2224880 645890 965680 TRUE FALSE FALSE 658519.732 965137.8089 693121.9593 551179.9535 957019.9177 1231301.485 1200413.712 1679224.692 775514.1985 724953.748 0.908361028 1.331309496 0.956091283 0.760296716 1.32011169 1.69845523 1.655848687 2.31631976 1.069743002 1 19.46752943 -6.020326269 4.326658972 1.630915086 1.010501167 0.323386355 0.370210156 0.218379164 9.76323909 0.118791486 0.125964673 9.54E-07 6.020326269 -0.62041392 DSSSSLTDPQVSYVKS(ph)PAAERR ddPTM_HeLa_A486_30min_R1 2 DSSSSLTDPQVSYVKSPAAERR 22 2 O94887-3;O94887-2;O94887;H7C3M7 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSSSLTDPQVS(0.065)YVKS(0.935)PAAERR;DSSSSLTDPQVS(0.332)Y(0.002)VKS(0.666)PAAERR ; 127.24 1.04E-06 717580000 668200 565670 501520 362940 1099420 599890 964380 1020210 490200 960870 TRUE FALSE FALSE 621362.6306 520844.2491 695721.9752 844942.662 961520.4919 525881.671 723081.9238 787930.454 532690.9307 720261.8978 0.862689853 0.723131753 0.965929167 1.173104762 1.33495954 0.730125629 1.003915279 1.093949932 0.739579495 1 19.45816206 -4.89058502 5.636978207 1.019923809 0.795732854 0.194596779 0.173659862 0.315374783 14.33312488 0.046875318 0.100666328 1.29E-05 4.89058502 -0.224190956 DSSST(ph)DSANEKPALIPR ddPTM_HeLa_A486_30min_R1 1 DSSSTDSANEKPALIPR 17 1 B8ZZZ7;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3;F2Z2S1;C9JKE4;F8VZ02;F8VT91;C9JGM8;C9JW67;F8W6C2;Q9NUQ6-2 B8ZZZ7 SPATS2L SPATS2-like protein 1 0 DSS(0.002)S(0.017)T(0.49)DS(0.49)ANEKPALIPR 143.4 9.87E-08 222440000 108500 95078 81111 55181 99947 119460 155460 124950 82400 139900 TRUE FALSE FALSE 100894.7103 87543.67301 112519.3514 128464.1567 87410.71529 104722.2398 116562.2637 96501.61264 89542.49835 104868.1294 0.962110327 0.834797698 1.072960413 1.225006658 0.833529842 0.998608828 1.111512758 0.92021869 0.853858068 1 16.67821677 -9.373084201 7.677340392 0.999999999 0.983366021 0.001558989 0.121986232 0 0 0.121427916 0.029450596 4.24E-10 9.373084201 -0.016633978 DSTDS(ph)PGSENR ddPTM_HeLa_A485_30min_R1 1 DSTDSPGSENR 11 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 DSTDS(1)PGSENR 251.2 1.97E-40 0 119140 98927 82892 165250 86427 69463 91125 67948 111740 195950 TRUE FALSE FALSE 145642.282 110495.6521 113557.2002 174277.1891 77822.02442 73099.97527 71655.39933 51283.64646 134165.1931 147103.2712 0.990068275 0.751143406 0.771955642 1.184726809 0.52902987 0.496929638 0.487109489 0.348623427 0.912047652 1 17.1664698 -5.793096131 24.99962528 0.582694003 0.901198945 0.286629476 0.220064874 225.5663331 178130.6167 0.066258152 0.075136247 1.61E-06 5.793096131 0.318504942 DSTDSPGSENRAPS(ph)PHVVQENLHSEVVEVCTSSTLK ddPTM_HeLa_A486_30min_R1 1 DSTDSPGSENRAPSPHVVQENLHSEVVEVCTSSTLK 36 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 DS(0.008)T(0.008)DS(0.037)PGS(0.04)ENRAPS(0.896)PHVVQENLHS(0.011)EVVEVCTSSTLK 92.874 4.80E-05 296840000 74853 93189 69594 52674 113140 103040 150270 151530 89956 122440 TRUE FALSE FALSE 69606.19124 85804.36425 96542.66059 122627.734 98948.92621 90327.97243 112670.8566 117029.9269 97753.45851 91780.22705 0.758400731 0.934889431 1.051889538 1.336101881 1.078107228 0.984176825 1.227615797 1.275110453 1.065081899 1 16.48589576 -4.601633244 2.084246413 1.145722572 0.759730447 0.53887656 0.110697893 0.292100198 2.199451136 0.031022627 0.16384983 2.50E-05 4.601633244 -0.385992125 DSTLIMQLLR ddPTM_HeLa_A485_30min_R1 4 DSTLIMQLLR 10 0 P31946-2;P31946;E7EX29;P63104;B0AZS6;Q04917;B7Z2E6;H0YB80;P63104-2;P31947-2;P31947;P61981;P27348;P62258;P62258-2;K7EM20 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAZ;YWHAH;SFN;YWHAG;YWHAQ;YWHAE "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 0 0 ;;; ;;; 159.58 9.65E-06 237850000 190524 191790 196039 220566 231292 163928 205862 172835 189165 285326 FALSE FALSE TRUE 232905.4065 214218.1721 268561.984 232614.9621 208263.7564 172511.0166 161877.902 130446.9453 227128.6804 214199.4792 1.087329471 1.000087269 1.253793823 1.085973518 0.972288808 0.805375518 0.75573434 0.60899749 1.060360563 1 17.70859545 -6.003618231 2.606438879 0.81624527 1.110305089 0.456562834 0.131989222 0.232472582 3.182120874 0.045388972 0.0493208 9.92E-07 6.003618231 0.294059819 DSTLIMQLLR ddPTM_HeLa_A486_30min_R1 5 DSTLIMQLLR 10 0 P31946-2;P31946;E7EX29;P63104;B0AZS6;Q04917;B7Z2E6;H0YB80;P63104-2;P31947-2;P31947;P61981;P27348;P62258;P62258-2;K7EM20 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAZ;YWHAH;SFN;YWHAG;YWHAQ;YWHAE "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 0 0 ;;;; ;;;; 210.01 8.58E-14 237136000 240259 293039 212749 114165.7 395754 289826 308800 286324 287902 266666 FALSE FALSE TRUE 223418.0848 269817.5224 295131.1104 265783.5192 346114.8431 254070.2149 231534.9738 221134.2756 312857.5772 199891.0979 1.117699023 1.349822605 1.4764595 1.3296416 1.731517045 1.271043171 1.158305579 1.106273756 1.565140121 1 17.6088547 -6.506714675 24.65286276 1.216055729 1.408695157 0.179054742 0.196755514 1073.484676 1637245.258 0.069915364 0.059936915 3.11E-07 6.506714675 0.192639427 DSYS(ph)SSR ddPTM_HeLa_A485_30min_R1 2 DSYSSSR 7 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DSYS(0.5)S(0.5)S(0.001)R;DSYS(0.493)S(0.493)S(0.013)R ; 137.14 0.0015697 1494460000 945180 1178180 715610 1525090 751490 1304230 1110380 1359250 1277520 1660230 TRUE FALSE FALSE 1155432.03 1315957.902 980343.918 1608401.805 676669.017 1372517.466 873138.242 1025891.806 1533906.546 1246365.215 0.927041301 1.055836513 0.786562322 1.29047392 0.542913914 1.10121612 0.700547666 0.823106898 1.230703912 1 20.24929544 -7.75591633 24.99973141 1.115351968 0.905354878 0.142928051 0.207506966 230.0455511 1041322.8 0.139687646 0.049461005 1.75E-08 7.75591633 -0.20999709 DSYS(ph)SSR ddPTM_HeLa_A486_30min_R1 2 DSYSSSR 7 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DS(0.005)YS(0.486)S(0.486)S(0.024)R;DSYS(0.98)S(0.017)S(0.002)R ; 108.3 0.0031825 790140000 803370 600620 914000 226254 722310 1083410 573580 681010 1305380 1030650 TRUE FALSE FALSE 747057.9116 553024.6838 1267925.278 526730.7462 631711.1445 949749.8895 430064.2173 525958.8893 1418531.389 772568.5316 0.966979473 0.715826054 1.641181625 0.681791614 0.817676515 1.229340635 0.556668049 0.680792535 1.836123698 1 19.55930339 -7.748232938 24.9991257 1.418062125 0.917108473 0.245017677 0.355717307 278.7916179 527744.873 0.23651757 0.088222898 1.79E-08 7.748232938 -0.500953652 DSYSSSRS(ph)DLYSSGR ddPTM_HeLa_A485_30min_R1 1 DSYSSSRSDLYSSGR 15 1 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 DSYS(0.003)S(0.001)S(0.266)RS(0.729)DLYS(0.001)SGR 302.33 1.90E-66 164300000 98294 137180 126400 92147 200480 150650 198080 229390 139300 166770 TRUE FALSE FALSE 120159.1612 153222.0077 173160.6199 97180.75728 180519.5073 158537.8011 155758.5898 173131.7428 167256.2323 125197.3082 0.959758344 1.223844266 1.383101781 0.776220821 1.4418801 1.266303592 1.244104942 1.382871128 1.335941121 1 16.93384402 DSYSSSRS(ph)DLYSSGR ddPTM_HeLa_A486_30min_R1 2 DSYSSSRSDLYSSGR 15 1 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 DS(0.001)YS(0.011)S(0.011)S(0.047)RS(0.93)DLYSSGR;DS(0.022)YS(0.129)S(0.129)S(0.173)RS(0.548)DLYSSGR ; 111.64 0.0014322 284590000 243598 224832 169381 127908 270310 258603 357132 310524 190282 390081 TRUE FALSE FALSE 226523.0381 207015.4935 234969.8594 297776.2881 236405.1993 226699.1911 267773.7962 239824.4639 206775.797 292402.1786 0.774696821 0.707982049 0.803584503 1.018379171 0.80849329 0.775299255 0.915772234 0.820186994 0.707162299 1 18.15759453 -11.50401226 2.335467034 3.72229284 0.818951982 0.282395106 0.088412543 4072488.848 798095.4178 58318610.59 0.023641155 3.13E-12 11.50401226 -2.903340858 DSYVGDEAQS(ph)KR ddPTM_HeLa_A485_30min_R1 1 DSYVGDEAQSKR 12 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 1 0 DSYVGDEAQS(1)KR 124.25 2.65E-05 443510000 183630 179260 132750 299160 248790 224830 297920 306610 187950 454390 TRUE FALSE FALSE 224477.86 200222.8976 181859.7492 315502.3533 224019.594 236601.7511 234266.9582 231413.4168 225669.841 341118.9354 0.658063322 0.586959201 0.533127101 0.92490425 0.656719903 0.693604859 0.686760346 0.678395107 0.661557649 1 18.37991532 -14 0.369467306 5.237470352 0.668250907 0.507199671 0.095831736 461.5275437 3.583597329 1560.855693 0.069974765 1.00E-14 14 -4.569219445 DSYVGDEAQS(ph)KR ddPTM_HeLa_A486_30min_R1 2 DSYVGDEAQSKR 12 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 1 0 DSYVGDEAQS(1)KR;DSYVGDEAQS(1)KR ; 141.55 1.43E-07 1218330000 1000250 745270 370570 586420 761950 847420 1064670 1073710 618350 1356420 TRUE FALSE FALSE 930137.6403 686212.091 514064.6282 1365215.396 666379.1261 742873.9363 798278.3051 829249.6719 671949.0759 1016763.603 0.914802258 0.674898363 0.505589133 1.342706792 0.655392388 0.730626012 0.785116917 0.815577652 0.660870505 1 19.95555286 -11.42837405 2.224478169 2.909163348 0.787254335 0.082291876 0.213103041 12466526.88 1346253.061 119613557.9 0.05253266 3.73E-12 11.42837405 -2.121909013 DSYVGDEAQSK ddPTM_HeLa_A485_30min_R1 4 DSYVGDEAQSK 11 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;; ;;; 391.49 4.07E-143 970650000 1674010 1394940 1116990 2364060 2073740 1575290 2335440 2052340 1465190 3010700 FALSE FALSE TRUE 2046387.749 1558066.099 1530211.083 2493202.612 1867271.164 1657769.749 1836454.165 1549000.397 1759240.193 2260187.898 0.905406029 0.689352465 0.677028261 1.103095284 0.826157492 0.733465457 0.812522785 0.685341426 0.778360151 1 21.10801128 -6.022140483 24.32157393 0.782586468 0.83876744 0.010486317 0.135220734 2337.837204 2568137.809 0.045245326 0.045641017 9.50E-07 6.022140483 0.056180971 DSYVGDEAQSK ddPTM_HeLa_A486_30min_R1 4 DSYVGDEAQSK 11 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;; ;;; 342.18 8.69E-104 1738932000 1006240 1164200 673588 485751 2526740 1313950 1471250 1368820 946240 1318990 FALSE FALSE TRUE 935707.7722 1071944.552 934419.3129 1130852.876 2209812.708 1151848.208 1103127.689 1057169.567 1028260.845 988706.3188 0.946396068 1.084189037 0.945092891 1.143770253 2.235054704 1.165005408 1.115728369 1.069245282 1.040006345 1 19.91518253 -6.677774471 4.698557919 1.061539308 1.2757096 0.074307772 0.347126928 0.674104934 26.55567729 0.150472729 0.113416788 2.10E-07 6.677774471 0.214170292 DSYVGDEAQSK(ac)R ddPTM_HeLa_A485_30min_R1 2 DSYVGDEAQSKR 12 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 1 ; DSYVGDEAQSK(1)R;DSYVGDEAQSK(1)R 275.28 4.46E-50 390630000 314880 378660 597850 341420 491700 412440 729580 698490 320690 696090 FALSE TRUE FALSE 384923.9697 422940.9931 819019.5936 360070.9101 442744.6215 434034.7206 573699.2729 527184.2323 385049.5415 522567.5736 0.73660133 0.809351775 1.56729892 0.689041816 0.847248555 0.830581044 1.097847057 1.008834568 0.736841628 1 18.99525808 -4.059315916 0.002885323 1.521265148 0.349000984 0.000305787 0.246831346 4314645.368 1834.706628 364466.2971 381083.5229 8.72E-05 4.059315916 -1.172264163 DSYVGDEAQSK(ac)R ddPTM_HeLa_A486_30min_R1 2 DSYVGDEAQSKR 12 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 1 ; DSYVGDEAQSK(1)R;DSYVGDEAQSK(1)R 228.84 3.76E-21 455980000 326980 353300 489990 133169 401440 352770 530570 476080 279530 674380 FALSE TRUE FALSE 304060.3905 325303.2213 679727.2504 310024.162 351087.6519 309248.8241 397815.7742 367686.9768 303759.8855 505510.8585 0.601491314 0.643513815 1.344634322 0.613288828 0.694520495 0.611755057 0.786957921 0.727357228 0.600896856 1 18.94738256 -4.549001619 24.99999433 0.785341898 0.611994636 0.09467578 0.215491165 482.2442541 461513.7857 0.055473973 0.146779276 2.82E-05 4.549001619 -0.173347263 DSYVGDEAQSKR ddPTM_HeLa_A485_30min_R1 10 DSYVGDEAQSKR 12 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;;;;;;;; ;;;;;;;;; 198.52 3.08E-14 21040670000 7006750 8112710 5693580 6696710 9835900 9133130 12657830 14925620 6812350 9514140 FALSE FALSE TRUE 8565377.364 9061420.863 7799872.172 7062534.31 8856603.26 9611326.564 9953381.216 11265088.29 8179526.158 7142439.993 1.199222867 1.268673013 1.092045881 0.988812551 1.239996873 1.345664307 1.393554755 1.577204471 1.145200543 1 22.76798558 -5.998135313 24.94710692 1.330071827 1.139736938 0.155131526 0.159275939 87.51139888 1170753.234 0.049182651 0.055395596 1.00E-06 5.998135313 -0.190334889 DSYVGDEAQSKR ddPTM_HeLa_A486_30min_R1 7 DSYVGDEAQSKR 12 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;;;;; ;;;;;; 183 5.95E-10 12859490000 8029240 7326210 4608901 2783669 9109510 7676480 9421090 9894740 5682341 8545090 FALSE FALSE TRUE 7466431.739 6745654.438 6393590.898 6480522.111 7966910.313 6729433.946 7063833.636 7641923.703 6174890.893 6405343.845 1.165656664 1.053129169 0.998165134 1.011736804 1.243791201 1.050596831 1.102803192 1.193054407 0.964021767 1 22.61084459 -4.251153542 22.8233739 1.076626347 1.165656836 0.098447154 0.085048614 1116.628344 2477525.193 0.021016033 0.258966593 5.61E-05 4.251153542 0.089030489 DT(ph)HEDHDT(ph)STENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A485_30min_R1 3 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.333)HEDHDT(0.333)S(0.333)T(0.333)ENT(0.333)DES(0.333)NHDPQFEPIVSLPEQEIK;DT(0.333)HEDHDT(0.333)S(0.333)T(0.333)ENT(0.333)DES(0.333)NHDPQFEPIVSLPEQEIK;DT(0.468)HEDHDT(0.368)S(0.368)T(0.368)ENT(0.368)DES(0.06)NHDPQFEPIVSLPEQEIK ;; 172.52 1.30E-14 1088900000 286200 284473 223977 276044 443460 296016 492440 469430 291115 470240 TRUE FALSE FALSE 349864.2026 317739.6428 306835.4128 291123.5847 399307.5653 311514.94 387226.1711 354301.5565 349539.1102 353017.8221 0.991066685 0.90006686 0.86917825 0.824671069 1.131125797 0.882434032 1.096902612 1.003636458 0.99014579 1 18.42938149 -5.747286106 24.99999721 1.014785379 0.894585279 0.396057982 0.073223975 244.0459661 431074.828 0.020895942 0.026841072 1.79E-06 5.747286106 -0.1202001 DT(ph)HEDHDT(ph)STENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A486_30min_R1 2 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.333)HEDHDT(0.333)S(0.333)T(0.333)ENT(0.333)DES(0.333)NHDPQFEPIVSLPEQEIK;DT(0.333)HEDHDT(0.333)S(0.333)T(0.333)ENT(0.333)DES(0.333)NHDPQFEPIVSLPEQEIK ; 101.77 0.00012921 425554000 133264 155814 100741 29517 167321 151838 163152 153874 110760 107654.2 TRUE FALSE FALSE 123922.8818 143466.7312 139750.6131 68717.06771 146334.04 133105.7713 122329.644 118840.2492 120360.766 80696.88761 1.535658753 1.777847144 1.731796817 0.851545453 1.813378983 1.649453595 1.515915267 1.472674508 1.49151683 1 16.30022541 -11.78938184 0.308318503 3.48E-14 1.574710078 0.289169294 0.255969176 83.78016181 2.63468176 55.2755035 0.256778165 1.62E-12 11.78938184 1.574710078 DT(ph)HEDHDTSTENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A485_30min_R1 5 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 1 0 DT(0.187)HEDHDT(0.163)S(0.163)T(0.163)ENT(0.163)DES(0.163)NHDPQFEPIVSLPEQEIK;DT(0.187)HEDHDT(0.163)S(0.163)T(0.163)ENT(0.163)DES(0.163)NHDPQFEPIVSLPEQEIK;DT(0.167)HEDHDT(0.167)S(0.167)T(0.167)ENT(0.167)DES(0.167)NHDPQFEPIVSLPEQEIK;DT(0.213)HEDHDT(0.157)S(0.157)T(0.157)ENT(0.157)DES(0.157)NHDPQFEPIVSLPEQEIK;DT(0.166)HEDHDT(0.166)S(0.166)T(0.166)ENT(0.166)DES(0.166)NHDPQFEPIVS(0.001)LPEQEIK ;;;; 152.65 3.88E-10 8481190000 836763 1056165 799222 949891 1581704 1107164 1665479 1764629 1197996 1605999 TRUE FALSE FALSE 1022898.043 1179674.309 1094887.476 1001781.14 1424223.996 1165133.395 1309635.806 1331850.971 1438422.809 1205653.006 0.848418274 0.978452593 0.908128185 0.830903366 1.181288472 0.96639198 1.086246043 1.104671879 1.193065336 1 20.20138332 -5.756678906 24.99927369 1.087615054 0.898877708 0.623673244 0.074928751 82.55743998 433540.9633 0.022183075 0.027700156 1.75E-06 5.756678906 -0.188737346 DT(ph)HEDHDTSTENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A486_30min_R1 4 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 1 0 DT(0.167)HEDHDT(0.167)S(0.167)T(0.167)ENT(0.167)DES(0.167)NHDPQFEPIVSLPEQEIK;DT(0.261)HEDHDT(0.226)S(0.226)T(0.226)ENT(0.03)DES(0.03)NHDPQFEPIVSLPEQEIK;DT(0.167)HEDHDT(0.167)S(0.167)T(0.167)ENT(0.167)DES(0.167)NHDPQFEPIVSLPEQEIK;DT(0.167)HEDHDT(0.167)S(0.167)T(0.167)ENT(0.167)DES(0.167)NHDPQFEPIVSLPEQEIK ;;; 135.39 5.06E-07 7164120000 512642 505898 294860 80866 533918 540451 681910 636317 422888 527298 TRUE FALSE FALSE 476708.4431 465808.8 409037.6886 188260.1347 466949.0259 473775.6505 511288.9055 491441.5098 459544.2723 395259.1487 1.206065551 1.17848961 1.034859509 0.476295452 1.181374365 1.198645628 1.293553627 1.24334 1.162640445 1 18.59243933 -5.958606254 24.99992818 1.200638305 0.972384439 0.199709114 0.199813376 235.5013713 142230.9919 0.065467603 0.074233223 1.10E-06 5.958606254 -0.228253865 DT(ph)PGHGSGWAETPR ddPTM_HeLa_A485_30min_R1 1 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 DT(1)PGHGSGWAETPR 111.83 0.00031058 163430000 100700 163200 157600 59104 174590 117940 138400 145850 143610 102400 TRUE FALSE FALSE 123100.3676 182284.8203 215902.7983 62332.70186 157207.2066 124115.156 108829.7094 110080.0588 172431.2097 76873.56453 1.601335496 2.371228932 2.808544128 0.810847035 2.045009979 1.614536243 1.415697451 1.431962463 2.24304949 1 16.23019995 -5.251465878 24.99509798 1.549604742 2.271455403 0.332496131 0.485549954 831.7872339 2084580.024 0.128155515 0.218638935 5.60E-06 5.251465878 0.72185066 DT(ph)PGHGSGWAETPR ddPTM_HeLa_A486_30min_R1 1 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 DT(1)PGHGSGWAETPR 105.02 0.00015759 0 186030 174790 134970 13241 177750 132200 133170 129510 154870 69498 TRUE FALSE FALSE 172990.2577 160939.0038 187233.9986 30825.71716 155454.9375 115890.5081 99849.45747 100023.4002 168294.2563 52095.24844 3.320653281 3.089322129 3.594070558 0.591718402 2.984052139 2.224588836 1.916671106 1.920010043 3.230510677 1 15.66886417 -5.193564387 24.99985527 2.068648583 3.310147928 0.399077884 0.755660266 189.1115369 69653.1767 0.194680806 0.337197019 6.40E-06 5.193564387 1.241499345 DT(ph)PTSAGPNSFNK ddPTM_HeLa_A486_30min_R1 2 DTPTSAGPNSFNK 13 0 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 DT(0.653)PT(0.336)S(0.011)AGPNSFNK;DT(0.962)PT(0.035)S(0.003)AGPNSFNK ; 133.16 7.61E-05 294180000 398770 468970 239879 111558 332810 429200 431260 407770 317490 517630 TRUE FALSE FALSE 370818.2823 431807.1092 332766.573 259712.6618 291065.8665 376249.6678 323354.1866 314929.6726 345010.2888 388012.0788 0.955687471 1.112870276 0.857619108 0.669341693 0.750146406 0.969685451 0.833361136 0.811649146 0.889174095 1 18.56574204 -4.843296304 7.026242884 0.83373441 1.033125956 0.361376167 0.09814338 0.199431581 14.07596177 0.025995037 0.055046504 1.43E-05 4.843296304 0.199391546 DT(ph)SGLER ddPTM_HeLa_A485_30min_R1 1 DTSGLER 7 0 Q9H307 Q9H307 PNN Pinin 1 0 DT(0.577)S(0.423)GLER 96.948 0.025384 1317300000 1626700 1893900 1511100 2159800 2447100 1938100 2595400 2645300 1694200 2826500 TRUE FALSE FALSE 1988553.803 2115375.13 2070118.772 2277784.405 2203458.132 2039575.919 2040871.588 1996536.027 2034210.4 2121905.568 0.937154713 0.996922371 0.975594203 1.073461722 1.038433644 0.961200135 0.961810751 0.940916532 0.958671503 1 21.01692902 -6.299647143 20.70953721 0.960657614 1.006148765 0.225336531 0.036462772 109.1210321 59144.95103 0.013643372 0.012033359 5.02E-07 6.299647143 0.045491151 DT(ph)SQSDKDLDDALDKLSDSLGQR ddPTM_HeLa_A485_30min_R1 1 DTSQSDKDLDDALDKLSDSLGQR 23 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;A0A0C4DGD1 P20810-6 CAST Calpastatin 1 0 DT(0.333)S(0.333)QS(0.333)DKDLDDALDKLSDSLGQR 63.085 0.016194 39507000 49910 28068 22134 116050 43491 34760 72485 42161 27225 159050 TRUE FALSE FALSE 61012.30731 31350.30844 30322.28767 122389.5176 39160.88333 36579.97985 56997.9876 31820.94864 32688.80778 119401.7621 0.510983307 0.262561522 0.25395176 1.025022709 0.327975757 0.306360469 0.477363036 0.266503175 0.273771569 1 16.8654646 -10.33541438 3.672603685 1.002117927 0.412741716 0.385963084 0.222639693 168374298.5 267119647.9 3896941.71 0.056014168 4.62E-11 10.33541438 -0.589376211 DT(ph)SQSDKDLDDALDKLSDSLGQR ddPTM_HeLa_A486_30min_R1 1 DTSQSDKDLDDALDKLSDSLGQR 23 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;A0A0C4DGD1 P20810-6 CAST Calpastatin 1 0 DT(0.36)S(0.32)QS(0.32)DKDLDDALDKLSDSLGQR 88.517 0.0022695 70884000 89495 64776 24862 70266 52443 109450 143520 116620 57793 207450 TRUE FALSE FALSE 83221.86265 59642.91385 34489.23223 163582.799 45865.10993 95947.17181 107609.778 90068.1718 62802.54377 155503.1697 0.535177918 0.383547898 0.221791185 1.051957972 0.294946463 0.617011036 0.69201019 0.579204732 0.403866647 1 17.24658446 -14 0.24474955 3.676532326 0.491950147 0.277372321 0.223977218 237.6606307 2.366962955 318.1605612 0.335277147 1.00E-14 14 -3.184582178 DTAAVVS(ph)R ddPTM_HeLa_A485_30min_R1 1 DTAAVVSR 8 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 DTAAVVS(1)R 99.53 0.0023203 728280000 599260 563580 661240 744050 818090 638200 841330 654230 640800 863590 TRUE FALSE FALSE 732563.3196 629485.7785 905860.1925 784695.5675 736638.0871 671615.1652 661572.9725 493779.0667 769402.6822 648312.9062 1.129953318 0.970959814 1.397257688 1.210365489 1.136238505 1.03594292 1.020453189 0.761636953 1.186776748 1 19.30633077 -6.35811363 2.159475947 0.974018068 1.17724978 0.277700046 0.13693204 0.409651646 3.753032197 0.056457242 0.048692419 4.38E-07 6.35811363 0.203231711 DTAAVVS(ph)R ddPTM_HeLa_A486_30min_R1 2 DTAAVVSR 8 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 DTAAVVS(1)R;DTAAVVS(1)R ; 109.79 0.0012371 1445020000 1320870 1727370 1573230 582590 1987910 1895830 1946870 2013810 1693750 1811490 TRUE FALSE FALSE 1228283.834 1590486.91 2182426.789 1356298.962 1738567.791 1661941.77 1459742.534 1555309.424 1840565.614 1357881.113 0.904559186 1.171300561 1.607229652 0.998834839 1.280353467 1.223922885 1.075014977 1.145394401 1.355468896 1 20.37292574 DTASLSTTPSES(ph)PR ddPTM_HeLa_A485_30min_R1 2 DTASLSTTPSESPR 14 0 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 1 0 DTASLSTTPS(0.001)ES(0.999)PR;DTASLSTTPS(0.001)ES(0.999)PR ; 178.03 1.91E-13 373640000 345960 442880 375390 314250 600260 443420 441440 546590 354860 359120 TRUE FALSE FALSE 422917.6085 494670.9635 514262.3823 331416.6818 540496.0068 466636.7855 347122.7378 412537.9455 426077.147 269597.9931 1.568697169 1.834846609 1.907515617 1.229299514 2.004822071 1.730861495 1.287556831 1.530196648 1.580416613 1 18.04045023 -10.35967005 0.216220178 0.430834813 1.792027 0.43736228 0.227685441 20.87949278 0.872942713 7.111358873 0.546067419 4.37E-11 10.35967005 1.361192188 DTDDIES(ph)PKR ddPTM_HeLa_A486_30min_R1 2 DTDDIESPKR 10 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7;D6RGH8 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DTDDIES(1)PKR;DTDDIES(1)PKR ; 120.14 0.00015452 1538700000 2529600 2415700 1034050 1879690 2121400 3108500 4052700 3652100 1835420 4922000 TRUE FALSE FALSE 2352288.103 2224271.134 1434461.853 4376013.314 1855314.231 2725004.875 3038671.595 2820596.555 1994515.683 3689499.163 0.637562986 0.602865331 0.38879582 1.186072451 0.502863437 0.738583953 0.823600023 0.764493073 0.540592529 1 21.81499356 -14 0.153729147 2.019207947 0.609746806 0.159285956 0.208725874 259.8392748 2.341230069 82.28575329 0.977292903 1.00E-14 14 -1.409461141 DTDSEEEIR ddPTM_HeLa_A485_30min_R1 1 DTDSEEEIR 9 0 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 0 184.49 4.76E-08 22393000 14807 13208 15307 18580 19898 13028 17923 14600 14934 26066 FALSE FALSE TRUE 18100.76607 14752.56071 20969.69628 19594.97835 17916.88525 13710.12593 14093.60463 11019.32711 17931.11682 19568.22591 0.925008028 0.753903843 1.071619695 1.001367137 0.915611121 0.700632035 0.720229044 0.563123461 0.9163384 1 14.25622534 -6.200640802 6.373767517 0.749205148 0.936196 0.22667548 0.135973769 0.296741255 24.83367701 0.044628688 0.044456977 6.30E-07 6.200640802 0.186990852 DTDSEEEIREAFR ddPTM_HeLa_A486_30min_R1 2 DTDSEEEIREAFR 13 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 0 ; ; 126.09 3.73E-05 302476000 227392 239123 235289 116991 416110 241194 289643 321730 198569 263760 FALSE FALSE TRUE 211452.9951 220174.0226 326399.2021 272360.9604 363917.6037 211437.9366 217171.2579 248479.1023 215781.1208 197712.7792 1.069495841 1.11360542 1.650875595 1.377558707 1.840637743 1.069419677 1.098417911 1.256768042 1.091386817 1 17.5930466 DTEEPLPVKESDQTLAALLS(ph)PK ddPTM_HeLa_A485_30min_R1 4 DTEEPLPVKESDQTLAALLSPK 22 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 DTEEPLPVKESDQTLAALLS(1)PK;DTEEPLPVKESDQTLAALLS(1)PK;DTEEPLPVKESDQTLAALLS(1)PK;DTEEPLPVKESDQTLAALLS(1)PK ;;; 148.85 6.94E-10 1820670000 235146 185112 98137 378638 284686 257663 484211 456552 171623 511526 TRUE FALSE FALSE 287453.4165 206759.2381 134441.9601 399322.0352 256341.6622 271153.8363 380755.3642 344581.9062 206066.1619 384011.9821 0.748553248 0.538418715 0.350098347 1.039868686 0.667535583 0.706107749 0.991519489 0.897320714 0.536613886 1 18.5507918 -5.258838123 24.99996641 0.824140909 0.544962974 0.358476911 0.176473434 263.1119206 2528683.932 0.048245507 0.078822856 5.51E-06 5.258838123 -0.279177934 DTEEPLPVKESDQTLAALLS(ph)PK ddPTM_HeLa_A486_30min_R1 3 DTEEPLPVKESDQTLAALLSPK 22 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 DTEEPLPVKESDQTLAALLS(1)PK;DTEEPLPVKESDQTLAALLS(1)PK;DTEEPLPVKESDQTLAALLS(1)PK ;; 201.32 4.00E-27 922442000 227732 183675 68591.5 198713 181403 226971 401884 376250 124193 475709 TRUE FALSE FALSE 211769.1628 169119.9241 95151.96574 462613.9064 158649.7442 198969.6257 301328.3725 290586.0885 134958.1492 356588.3701 0.593875686 0.474272125 0.26683979 1.29733313 0.444910035 0.557981253 0.845031408 0.814906242 0.378470417 1 18.44390013 -14 0.100139026 1.979544411 0.42416814 0.119714045 0.282852226 429.0997047 2.917565021 91.27255603 4.790438354 1.00E-14 14 -1.555376271 DTFEHDPSES(ph)IDEFNK ddPTM_HeLa_A485_30min_R1 1 DTFEHDPSESIDEFNK 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 DTFEHDPSES(1)IDEFNK 298 9.48E-68 199940000 335660 234500 179280 415460 242050 235170 307500 222570 207160 479050 TRUE FALSE FALSE 410326.409 261922.7351 245603.1325 438155.5278 217950.6521 247483.1376 241800.113 167984.3585 248735.1118 359631.6513 1.140963004 0.728308352 0.682929691 1.218345288 0.606038571 0.688157276 0.672354928 0.467101152 0.691638544 1 18.45616047 DTFEHDPSES(ph)IDEFNK ddPTM_HeLa_A486_30min_R1 2 DTFEHDPSESIDEFNK 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 DTFEHDPSES(1)IDEFNK;DTFEHDPSES(1)IDEFNK ; 348.1 2.00E-104 336460000 666900 704400 285110 244333 469440 717420 739100 642980 538490 1006280 TRUE FALSE FALSE 620153.7539 648580.7786 395512.2275 568819.5719 410558.4578 628912.0146 554169.3626 496587.4902 585166.7468 754300.9382 0.822156944 0.859843526 0.524342749 0.754101636 0.54429 0.83376804 0.734679403 0.65834134 0.77577359 1 19.52478069 -8.069238061 8.180546493 0.999999504 0.714935813 0.381061079 0.108253972 1.913124269 226.0515857 0.103327016 0.02671913 8.53E-09 8.069238061 -0.285063691 DTFTVQDS(ph)TAMSWWR ddPTM_HeLa_A486_30min_R1 1 DTFTVQDSTAMSWWR 15 0 I3L1W2;Q6UWF3-2;Q6UWF3-3;Q6UWF3 I3L1W2 SCIMP SLP adapter and CSK-interacting membrane protein 1 0 DTFT(0.118)VQDS(0.647)T(0.118)AMS(0.118)WWR 60.401 0.02806 34084000 37710 44801 35410 16028 51766 40793 53982 55767 41148 47422 TRUE FALSE FALSE 35066.72373 41250.8056 49121.70031 37313.99401 45273.02558 35760.37441 40475.13264 43070.07149 44714.74177 35547.22253 0.986482803 1.160450878 1.381871685 1.049702096 1.273602334 1.005996302 1.138629962 1.211629726 1.257896921 1 15.11744922 DTGIFLDLMHLK ddPTM_HeLa_A485_30min_R1 4 DTGIFLDLMHLK 12 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ;;; ;;; 162.26 1.00E-09 90114000 126942.8 130708.6 106218.8 142560.1 172794.4 134986.9 177086.6 198433.7 121588.7 196096.7 FALSE FALSE TRUE 155180.7879 145993.8338 145513.5543 150347.7973 155590.3828 142054.6054 139250.6012 149767.5239 145990.4368 147213.4016 1.054121338 0.991715647 0.988453175 1.021291511 1.056903659 0.96495702 0.945909814 1.017349795 0.991692572 1 17.16754949 -6.283582054 24.99144405 0.982686701 1.01882869 0.323173422 0.027583324 1137.624917 1283983.806 0.010237333 0.009034522 5.20E-07 6.283582054 0.036141989 DTGIFLDLMHLK ddPTM_HeLa_A486_30min_R1 3 DTGIFLDLMHLK 12 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ;; ;; 132.76 7.94E-05 84304000 82578 86887 55699.4 40272.6 113866 86286 92255 98644 75543.5 98891 FALSE FALSE TRUE 76789.70863 80001.75768 77267.69936 93756.64806 99583.86452 75640.91061 69171.82323 76184.91458 82091.6714 74128.04993 1.035906229 1.079237317 1.042354405 1.264793127 1.343403268 1.020408748 0.933139659 1.027747454 1.107430608 1 16.17773194 -6.472134025 24.99988055 1.013303082 1.152364037 0.323292249 0.097887754 476.8489214 234924.4241 0.038125981 0.03362342 3.37E-07 6.472134025 0.139060955 DTGK(ac)TPVEPEVAIHR ddPTM_HeLa_A485_30min_R1 2 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 1 ; DTGK(1)TPVEPEVAIHR;DTGK(1)TPVEPEVAIHR 171.26 1.26E-08 218810000 170074 198102 227190 187015 292050 246050 336080 333230 252820 343610 FALSE TRUE FALSE 207906.3746 221268.3056 311237.0352 197231.1559 262972.4766 258932.7975 264273.7625 251504.82 303558.655 257954.3507 0.805981268 0.857780863 1.20655858 0.764597129 1.019453542 1.003793101 1.024498179 0.974997395 1.17679215 1 17.97675625 -4.546857804 24.98394918 1.01212501 0.81893098 0.311281571 0.113207388 221.0593986 230322.682 0.027486505 0.072729935 2.84E-05 4.546857804 -0.19319403 DTGK(ac)TPVEPEVAIHR ddPTM_HeLa_A486_30min_R1 2 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 1 ; DTGK(1)TPVEPEVAIHR;DTGK(1)TPVEPEVAIHR 154.46 2.66E-07 216844000 210268 223983 209989 68064 271309 209164 240413 259457 204103 256844 FALSE TRUE FALSE 195529.299 206233.7713 291302.3645 158456.4318 237278.8954 183359.4723 180259.1246 200384.305 221794.8124 192528.5906 1.015585781 1.071185171 1.513034316 0.823028057 1.232434594 0.95237529 0.936271979 1.040802846 1.152009744 1 17.55471318 -5.296613041 24.99994473 1.023860558 1.187060748 0.204717488 0.16216875 1011.65418 719038.5888 0.045025856 0.06678692 5.05E-06 5.296613041 0.16320019 DTGKT(ph)PVEPEVAIHR ddPTM_HeLa_A485_30min_R1 1 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 1 0 DT(0.231)GKT(0.769)PVEPEVAIHR 179.87 1.16E-17 254300000 678100 556790 445150 846760 848580 645010 890030 807630 489070 980700 TRUE FALSE FALSE 828941.0056 621901.7471 609829.5092 893016.3547 764092.3957 678781.7262 699867.8196 609557.4762 587221.863 736229.5384 1.125927394 0.844711757 0.828314374 1.212959149 1.03784534 0.921970243 0.950610894 0.827944879 0.79760704 1 19.48979611 -6.835704272 1.968468905 0.864647499 0.997761677 0.165720475 0.120790484 0.620252666 4.89188014 0.067257379 0.040240134 1.46E-07 6.835704272 0.133114178 DTGKTPVEPEVAIHR ddPTM_HeLa_A485_30min_R1 2 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 0 ; ; 169.09 1.86E-08 29102000 86116 112574 86676 77391 132562 124309 161586 188473 101013 123355 FALSE FALSE TRUE 105272.2071 125738.55 118741.0593 81618.67437 119363.6618 130817.627 127061.8311 142249.7012 121285.3826 92604.86868 1.136789119 1.357796321 1.28223344 0.88136483 1.288956656 1.412643081 1.372085862 1.536093115 1.309708488 1 16.49880042 -5.99192868 24.97618161 1.361187275 1.174056411 0.149534316 0.172911735 303.3211088 938600.0263 0.053167909 0.060185984 1.02E-06 5.99192868 -0.187130864 DTGLGDKPFPLDTAEEGPPSTAIQGT(ph)PPSVPGLGQEEHVMK ddPTM_HeLa_A486_30min_R1 1 DTGLGDKPFPLDTAEEGPPSTAIQGTPPSVPGLGQEEHVMK 41 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 DTGLGDKPFPLDT(0.007)AEEGPPS(0.119)T(0.119)AIQGT(0.637)PPS(0.119)VPGLGQEEHVMK 47.457 0.029244 190690000 31424 22263 13365 11224 19098 25555 35219 28267 21649 36641 TRUE FALSE FALSE 29221.33987 20498.7988 18540.28593 26130.03923 16702.55076 22402.28392 26406.83369 21831.22116 23525.55275 27465.85511 1.063915169 0.746337542 0.675030355 0.95136449 0.608120544 0.815641233 0.961442256 0.794849499 0.856538151 1 14.74535159 -8.116611802 5.122978609 0.999996152 0.820422389 0.134900028 0.129886782 2.027915668 87.02121066 0.122296317 0.031846712 7.65E-09 8.116611802 -0.179573764 DTGS(ph)PPASEGPTDGSR ddPTM_HeLa_A485_30min_R1 1 DTGSPPASEGPTDGSR 16 0 Q969R8 Q969R8 ITFG2 Integrin-alpha FG-GAP repeat-containing protein 2 1 0 DTGS(1)PPASEGPTDGSR 297.45 9.02E-85 0 94090 112730 92870 119210 135970 110330 139490 133020 94206 138200 TRUE FALSE FALSE 115019.9959 125912.7929 127226.4776 125722.1404 122432.3494 116106.7082 109686.822 100396.6364 113112.2801 103749.2834 1.108634124 1.213625663 1.226287773 1.211788037 1.180078988 1.119108532 1.057229683 0.967685107 1.090246375 1 16.66274185 -6.599690756 1.88472961 1.020107394 1.194145671 0.764154695 0.041942038 0.157269454 1.135837835 0.019730915 0.014130194 2.51E-07 6.599690756 0.174038277 DTGSEVPSGSGHGPCT(ph)PPPAPANFEDVAPTGSGEPGAT(ph)RESPK ddPTM_HeLa_A486_30min_R1 1 DTGSEVPSGSGHGPCTPPPAPANFEDVAPTGSGEPGATRESPK 43 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 2 0 DTGSEVPS(0.009)GS(0.009)GHGPCT(0.981)PPPAPANFEDVAPT(0.003)GS(0.002)GEPGAT(0.646)RES(0.349)PK 120.23 3.37E-07 243890000 105080 109690 61263 11364 98989 108800 160590 125540 100120 118620 TRUE FALSE FALSE 97714.43463 100997.7649 84985.67428 26455.9663 86572.87658 95377.3622 120408.6835 96957.28252 108798.4822 88916.77991 1.09894257 1.135868449 0.955788934 0.297536262 0.973639359 1.072658752 1.354172785 1.090427281 1.223598991 1 16.44016808 -6.289634431 3.526039299 1.174561226 0.872984732 0.237331602 0.232559367 0.364476631 9.633469126 0.091070578 0.083047001 5.13E-07 6.289634431 -0.301576494 DTHEDHDT(ph)S(ph)TENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A485_30min_R1 3 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.016)HEDHDT(0.62)S(0.62)T(0.62)ENT(0.086)DES(0.037)NHDPQFEPIVSLPEQEIK;DT(0.116)HEDHDT(0.448)S(0.448)T(0.448)ENT(0.448)DES(0.091)NHDPQFEPIVSLPEQEIK;DT(0.033)HEDHDT(0.558)S(0.6)T(0.57)ENT(0.136)DES(0.103)NHDPQFEPIVSLPEQEIK ;; 147.75 9.38E-10 3076810000 247312 236557 169056 219149 340948 242095 368476 341245 222323 359763 TRUE FALSE FALSE 302325.7012 264220.2834 231596.8494 231120.555 307002.02 254770.7198 289748.0924 257554.1287 266941.1868 270080.705 1.119390225 0.97830122 0.857509793 0.855746266 1.136704749 0.943313295 1.072820409 0.953619136 0.988375629 1 18.04303105 -5.742709806 24.99949918 1.012712692 0.947761034 0.111201472 0.086631708 585.8536187 781971.0208 0.026338883 0.033942961 1.81E-06 5.742709806 -0.064951658 DTHEDHDT(ph)S(ph)TENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A486_30min_R1 4 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.018)HEDHDT(0.963)S(0.532)T(0.443)ENT(0.043)DESNHDPQFEPIVSLPEQEIK;DT(0.019)HEDHDT(0.468)S(0.468)T(0.468)ENT(0.468)DES(0.107)NHDPQFEPIVSLPEQEIK;DT(0.051)HEDHDT(0.805)S(0.384)T(0.346)ENT(0.246)DES(0.168)NHDPQFEPIVSLPEQEIK;DT(0.083)HEDHDT(0.46)S(0.46)T(0.46)ENT(0.46)DES(0.078)NHDPQFEPIVSLPEQEIK ;;; 198.02 2.33E-29 5199470000 413813 448651 270206 59542.2 480003 449667 580769 579190 361520 379531 TRUE FALSE FALSE 384806.8456 413098.2608 374836.9996 138617.2507 419796.5479 394191.6574 435454.4535 447321.0806 392856.8447 284493.9673 1.352601074 1.452045767 1.317556935 0.487241441 1.475590333 1.38558881 1.530628075 1.572339424 1.380896925 1 18.11803853 DTHEDHDT(ph)STENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A485_30min_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 1 0 DTHEDHDT(0.247)S(0.247)T(0.247)ENT(0.247)DES(0.011)NHDPQFEPIVSLPEQEIK 147.75 3.44E-09 977430000 125320 144580 126040 134230 251360 152760 248990 228950 162280 255750 TRUE FALSE FALSE 153197.0017 161487.3733 172667.441 141562.645 226333.7158 160758.2774 195791.2524 172799.6535 194848.1075 191996.2317 0.797916711 0.841096577 0.899327239 0.737319914 1.178844573 0.837299128 1.019766121 0.900015859 1.014853811 1 17.55071847 -5.730642923 24.99998695 0.980471288 0.826243259 0.458057114 0.091489205 196.9124293 159848.9841 0.025378062 0.03275933 1.86E-06 5.730642923 -0.15422803 DTHEDHDTS(ph)T(ph)ENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A485_30min_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.009)HEDHDT(0.545)S(0.666)T(0.627)ENT(0.131)DES(0.022)NHDPQFEPIVSLPEQEIK 226.41 1.09E-39 1168800000 216090 264750 180260 209150 343930 213300 392940 343640 241940 356290 TRUE FALSE FALSE 264158.475 295710.2095 246945.6752 220575.3349 309687.1216 224468.0582 308985.159 259361.7512 290495.1388 267473.46 0.987606303 1.105568416 0.923253003 0.82466251 1.157823739 0.83921619 1.155199319 0.969672846 1.08607089 1 18.02903622 -6.779473848 24.99888096 1.050208413 0.978440762 0.114992993 0.107618188 632.1646544 876281.1063 0.04367219 0.029510503 1.66E-07 6.779473848 -0.07176765 DTHEDHDTS(ph)T(ph)ENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A486_30min_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.008)HEDHDT(0.439)S(0.572)T(0.567)ENT(0.366)DES(0.048)NHDPQFEPIVSLPEQEIK 240.71 4.13E-51 1983500000 144080 151770 87138 39428 147690 143960 187330 180900 121910 151310 TRUE FALSE FALSE 133980.736 139743.1925 120880.1672 91790.37658 129165.343 126199.6789 140458.0526 139713.019 132477.257 113420.9911 1.181269311 1.232075219 1.065765393 0.809289142 1.138813387 1.112665985 1.238377934 1.231809188 1.168013572 1 16.79132814 -6.403302178 2.871204863 1.177400667 1.076802728 0.061738812 0.122285435 0.656828669 10.44286634 0.050920735 0.043329929 3.95E-07 6.403302178 -0.100597939 DTHEDHDTST(ph)ENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A486_30min_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 1 0 DT(0.035)HEDHDT(0.214)S(0.214)T(0.251)ENT(0.251)DES(0.035)NHDPQFEPIVSLPEQEIK 202.8 6.21E-29 593840000 206550 204860 148600 24094 224780 193440 289460 290630 217210 211610 TRUE FALSE FALSE 192071.9116 188626.1475 206141.8996 56092.04964 196585.9964 169575.3396 217034.0464 224459.8934 236037.9377 158621.4787 1.210882115 1.189158928 1.299583773 0.353622032 1.239340335 1.069056606 1.368251313 1.415066202 1.488057858 1 17.27522861 -6.747040878 7.322338399 1.352932522 1.052328173 0.165669646 0.278445984 0.24766586 65.8037053 0.11140964 0.08262969 1.79E-07 6.747040878 -0.300604349 DTHEDHDTSTENT(ph)DESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_A486_30min_R1 2 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 P43487-2;P43487;C9JJ34 P43487-2 RANBP1 Ran-specific GTPase-activating protein 1 0 DTHEDHDT(0.038)S(0.281)T(0.281)ENT(0.335)DES(0.064)NHDPQFEPIVSLPEQEIK;DT(0.001)HEDHDT(0.132)S(0.132)T(0.277)ENT(0.459)DESNHDPQFEPIVSLPEQEIK ; 348.15 7.04E-148 2653720000 171800 201860 105720 33872 213040 181170 275780 234870 154000 215710 TRUE FALSE FALSE 159757.7072 185863.8784 146657.6153 78855.7278 186318.5367 158819.0874 206776.9271 181395.2282 167348.844 161694.812 0.988019994 1.149473358 0.907002603 0.487682486 1.152285187 0.982215109 1.278809905 1.121837033 1.034967306 1 17.30291386 DTHPGS(ph)PGSPGPALRPLPAR ddPTM_HeLa_A486_30min_R1 1 DTHPGSPGSPGPALRPLPAR 20 1 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 0 DTHPGS(0.61)PGS(0.39)PGPALRPLPAR 97.57 0.00015146 222650000 113890 297550 103090 187980 181940 165170 189250 201870 141970 277990 TRUE FALSE FALSE 105906.8991 273971.0543 143009.2088 437626.94 159119.3887 144793.0047 141897.6483 155908.6078 154276.0739 208379.4946 0.508240503 1.314769742 0.686292138 2.100143975 0.763603871 0.694852461 0.680957829 0.748195537 0.74036111 1 17.66885379 -5.942680242 24.99999603 0.74890499 1.168321367 0.174663953 0.403541841 131.2835657 57258.35216 0.121103448 0.137318389 1.14E-06 5.942680242 0.419416377 DTHS(ph)PDAPAASGTSESEALISHLDK ddPTM_HeLa_A485_30min_R1 1 DTHSPDAPAASGTSESEALISHLDK 25 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 DT(0.025)HS(0.975)PDAPAASGTSESEALISHLDK 231.74 4.98E-39 245410000 158640 147650 126330 197620 163420 151940 193690 141120 153620 263200 TRUE FALSE FALSE 193928.9207 164916.3831 173064.724 208415.4802 147149.331 159895.3435 152306.5492 106510.0987 184450.1249 197589.0838 0.981475884 0.834643189 0.875882011 1.054792482 0.744723991 0.809231666 0.770824715 0.539048497 0.933503619 1 17.59214372 -5.78907864 24.99630171 0.775555073 0.925064799 0.200581512 0.128051641 306.7041162 277374.4533 0.038527287 0.043695333 1.63E-06 5.78907864 0.149509726 DTIIDVVGAPLT(ph)PNSR ddPTM_HeLa_A485_30min_R1 2 DTIIDVVGAPLTPNSR 16 0 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 0 DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(0.99)PNS(0.01)R ; 239.18 9.75E-41 1097170000 1407030 1626020 1546810 1528000 1928230 1418170 1700190 1715880 1568840 2110300 TRUE FALSE FALSE 1720018.969 1816168.895 2119039.387 1611470.771 1736248.651 1492423.188 1336930.517 1295057.74 1883691.798 1584241.047 1.085705343 1.146396817 1.337573844 1.017187867 1.095949795 0.942043 0.843893371 0.817462558 1.189018427 1 20.59536043 -5.859139232 1.676691701 0.942875331 1.176170453 0.36209763 0.120182506 0.36859471 2.138714865 0.044857634 0.055444048 1.38E-06 5.859139232 0.233295121 DTIIDVVGAPLT(ph)PNSR ddPTM_HeLa_A486_30min_R1 4 DTIIDVVGAPLTPNSR 16 0 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 0 DTIIDVVGAPLT(0.99)PNS(0.01)R;DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(0.998)PNS(0.002)R ;;; 277 7.18E-58 1443390000 2700640 2779480 2077600 861070 2782870 2473150 2972310 2733220 2549060 2716470 TRUE FALSE FALSE 2511339.082 2559223.882 2882102.36 2004614.476 2433816.495 2168037.898 2228606.6 2110925.472 2770014.573 2036248.231 1.233316766 1.256832956 1.415398337 0.984464686 1.195245481 1.064721808 1.094467053 1.036673938 1.360352108 1 20.95748201 -5.260378423 24.99999497 1.108286814 1.29734771 0.393502045 0.111826365 97.54327488 2298440.499 0.029579144 0.047708664 5.49E-06 5.260378423 0.189060896 DTIIDVVGAPLT(ph)PNSRK ddPTM_HeLa_A485_30min_R1 2 DTIIDVVGAPLTPNSRK 17 1 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 0 DTIIDVVGAPLT(0.994)PNS(0.006)RK;DTIIDVVGAPLT(0.989)PNS(0.011)RK ; 136.61 4.93E-06 136167000 161860 210678 132745 160827 219097 207846 278430 337850 148171 233490 TRUE FALSE FALSE 197865.1986 235314.9594 181852.8995 169612.5718 197282.9334 218728.4952 218941.1559 254991.7578 177907.5606 175285.2401 1.128818368 1.342468763 1.037468411 0.967637502 1.125496552 1.247843202 1.249056429 1.45472464 1.014960304 1 17.41934499 -6.249237414 19.67964633 1.225220889 1.119624464 0.034703226 0.151100657 112.1828749 180928.5924 0.05056586 0.049945321 5.63E-07 6.249237414 -0.105596425 DTIIDVVGAPLT(ph)PNSRK ddPTM_HeLa_A486_30min_R1 1 DTIIDVVGAPLTPNSRK 17 1 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 0 DTIIDVVGAPLT(0.944)PNS(0.056)RK 118.19 6.34E-05 39349000 60881 52518 37883 28915 58877 50669 67289 64006 36435 81191 TRUE FALSE FALSE 56613.55629 48356.28241 52552.31214 67315.58128 51492.09765 44417.97394 50452.58049 49433.23104 39593.21514 60860.24514 0.930222285 0.794546297 0.863491628 1.106068192 0.846071151 0.729835607 0.828990754 0.812241734 0.650559574 1 15.89321252 -5.994494031 24.9991257 0.793445664 0.918322647 0.202090194 0.110662157 232.5784372 1055979.721 0.034105618 0.038558314 1.01E-06 5.994494031 0.124876983 DTLESS(ph)T(ph)LMEKYNTRIS(ph)FENR ddPTM_HeLa_A485_30min_R1 1 DTLESSTLMEKYNTRISFENR 21 2 Q5T5S1 Q5T5S1 CCDC183 Coiled-coil domain-containing protein 183 3 0 DT(0.13)LES(0.553)S(0.574)T(0.578)LMEKY(0.166)NT(0.227)RIS(0.772)FENR 40.756 0.0079383 0 4677.4 9995.3 10426 6396.5 16907 4940 12448 12406 7051.1 18701 TRUE FALSE FALSE 5717.871493 11164.16339 14283.01126 6745.924598 15223.67972 5198.650761 9788.383109 9363.409048 8466.191093 14039.18487 0.40727945 0.795214501 1.017367561 0.480506857 1.084370628 0.370295769 0.697218763 0.666948198 0.603040075 1 13.77717155 -10.79865872 2.416550068 1.10089966 0.690548458 0.151996958 0.225397736 50781136.71 32209975.58 30024897.52 0.056272278 1.59E-11 10.79865872 -0.410351203 DTLLALHQHGHS(ph)GPFESK ddPTM_HeLa_A486_30min_R1 1 DTLLALHQHGHSGPFESK 18 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 DTLLALHQHGHS(1)GPFESK 186.62 4.44E-18 387340000 106910 79873 54500 22090 112670 128430 150920 172940 88418 145170 TRUE FALSE FALSE 99416.16108 73543.57259 75603.85956 51426.63637 98537.87799 112585.6124 113158.2197 133565.3373 96082.14343 108818.4871 0.913596244 0.675837117 0.694770361 0.472590988 0.90552516 1.034618431 1.039880472 1.227414025 0.882957905 1 16.73156415 -5.974583978 6.410934149 1.043408683 0.687145866 0.627848027 0.126222226 0.108223056 15.23544981 0.039960702 0.044650259 1.06E-06 5.974583978 -0.356262818 DTLLS(ph)PDS(ph)SFEYVPPKPKPSR ddPTM_HeLa_A485_30min_R1 1 DTLLSPDSSFEYVPPKPKPSR 21 2 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 2 0 DT(0.004)LLS(0.992)PDS(0.533)S(0.471)FEYVPPKPKPSR 58.812 0.01445 156390000 128990 107680 69895 169010 154290 133480 201640 187430 111070 267320 TRUE FALSE FALSE 157683.3805 120272.2393 95752.06907 178242.5883 138928.3459 140468.8064 158557.9668 141462.4986 133360.7302 200682.0437 0.785737367 0.599317393 0.477133217 0.88818404 0.6922809 0.699957026 0.790095436 0.704908601 0.664537433 1 17.61455201 -14 0.248677478 2.795986943 0.671885731 0.413521593 0.106363278 183.2511749 1.820540338 167.3027516 0.159191057 1.00E-14 14 -2.124101212 DTLLS(ph)PDS(ph)SFEYVPPKPKPSR ddPTM_HeLa_A486_30min_R1 1 DTLLSPDSSFEYVPPKPKPSR 21 2 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 2 0 DT(0.033)LLS(0.966)PDS(0.527)S(0.468)FEY(0.003)VPPKPKPS(0.002)R 53.998 0.020084 328990000 166540 151150 70717 154110 136740 187370 265960 242200 125900 298760 TRUE FALSE FALSE 154866.406 139172.3235 98100.51627 358775.8683 119588.7942 164254.1944 199413.995 187056.3472 136813.1134 223948.5514 0.691526715 0.621447751 0.438049345 1.602045943 0.534001195 0.733446113 0.890445568 0.835264823 0.610913143 1 17.77280781 DTLLS(ph)PDSS(ph)FEYVPPKPKPSR ddPTM_HeLa_A486_30min_R1 1 DTLLSPDSSFEYVPPKPKPSR 21 2 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 2 0 DT(0.477)LLS(0.523)PDS(0.183)S(0.816)FEY(0.001)VPPKPKPSR 58.477 0.014842 205640000 287890 269260 122630 270190 256490 345680 487540 426170 236090 560100 TRUE FALSE FALSE 267710.3977 247922.857 170115.6201 629015.9746 224318.6325 303033.5162 365552.3353 329140.3942 256554.4713 419847.3144 0.637637514 0.590507188 0.40518449 1.498201735 0.534286215 0.721770762 0.870679227 0.783952601 0.611066125 1 18.67950523 DTLQTVSS(ph)SPVTEISR ddPTM_HeLa_A485_30min_R1 1 DTLQTVSSSPVTEISR 16 0 Q5T3J3 Q5T3J3 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 1 0 DTLQTVS(0.06)S(0.469)S(0.469)PVT(0.001)EISR 98.552 0.00059356 172150000 150830 155690 161730 152870 289390 205070 345320 344350 161080 237340 TRUE FALSE FALSE 184381.6131 173896.5912 221560.6571 161220.901 260577.3155 215807.1481 271539.561 259897.6226 193407.2785 178175.5059 1.034831428 0.975984832 1.24349672 0.904843234 1.462475519 1.211205474 1.524000505 1.458660781 1.085487466 1 17.4429395 -5.761878988 25 1.320967798 1.049782159 0.314639489 0.177461972 13.03859964 741506.1226 0.051833576 0.062455044 1.73E-06 5.761878988 -0.271185639 DTLRT(ph)PPR ddPTM_HeLa_A485_30min_R1 6 DTLRTPPR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DT(0.001)LRT(0.999)PPR;DTLRT(1)PPR;DTLRT(1)PPR;DTLRT(1)PPR;DT(0.002)LRT(0.998)PPR;DT(0.035)LRT(0.965)PPR ;;;;; 120.06 0.00091485 12842210000 4144502 4189246 3793697 4938833 3967696 3155655 3746626 2713138 3883698 5475040 TRUE FALSE FALSE 5066432.172 4679141.878 5197143.389 5208628.941 3572658.255 3320880.216 2946128.748 2047736.651 4663120.565 4110213.289 1.232644589 1.138418264 1.264446155 1.267240548 0.869214808 0.807958124 0.716782449 0.498206907 1.134520337 1 21.97078183 -5.830342976 4.698452067 0.798321155 1.222713515 0.5743829 0.162211739 0.139990825 5.90369747 0.050062351 0.05817136 1.48E-06 5.830342976 0.42439236 DTLRT(ph)PPR ddPTM_HeLa_A486_30min_R1 6 DTLRTPPR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DT(0.054)LRT(0.946)PPR;DT(0.119)LRT(0.881)PPR;DTLRT(1)PPR;DT(0.012)LRT(0.988)PPR;DT(0.003)LRT(0.997)PPR;DT(0.005)LRT(0.995)PPR ;;;;; 107.03 0.0016138 14860160000 6829655 7985352 5025651 2121359 5970887 6808741 6515946 6116522 6520350 7120585 TRUE FALSE FALSE 6350931.453 7352563.625 6971717.659 4938630.96 5221962.676 5968747.762 4885587.392 4723923.463 7085539.188 5337544.169 1.189860215 1.377518086 1.306165802 0.925262781 0.978345567 1.118257306 0.915324958 0.885036885 1.327490502 1 22.34774467 -5.250764464 24.306814 1.014421614 1.299815085 0.483047406 0.127664197 395.7694569 901165.2218 0.033913863 0.057928909 5.61E-06 5.250764464 0.285393471 DTLRT(ph)PPRER ddPTM_HeLa_A485_30min_R1 10 DTLRTPPRER 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DT(0.002)LRT(0.998)PPRER;DT(0.001)LRT(0.999)PPRER;DTLRT(1)PPRER;DTLRT(1)PPRER;DT(0.001)LRT(0.999)PPRER;DT(0.065)LRT(0.935)PPRER;DTLRT(1)PPRER;DTLRT(1)PPRER;DT(0.014)LRT(0.986)PPRER;DT(0.103)LRT(0.897)PPRER ;;;;;;;;; 132.31 6.60E-05 39917125000 1439084 1791670 1752810 1726293 2406106 1833857 2283932 2216821 1768222 2259431 TRUE FALSE FALSE 1759203.271 2001190.221 2401247.36 1820596.015 2166545.638 1929874.917 1795951.27 1673142.174 2123087.936 1696196.433 1.037145956 1.179810417 1.415665846 1.073340316 1.277296424 1.137766168 1.058810899 0.986408261 1.251675746 1 20.69387182 -6.536085233 5.058677083 1.074962933 1.201942713 0.190568813 0.118565832 0.302650291 22.25766527 0.044673278 0.035618777 2.91E-07 6.536085233 0.12697978 DTLRT(ph)PPRER ddPTM_HeLa_A486_30min_R1 6 DTLRTPPRER 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DT(0.001)LRT(0.999)PPRER;DT(0.001)LRT(0.999)PPRER;DTLRT(1)PPRER;DTLRT(1)PPRER;DT(0.001)LRT(0.999)PPRER;DT(0.003)LRT(0.997)PPRER ;;;;; 132.09 6.74E-05 52585000000 1388289 1482173 1291769 608964 1931770 1524420 1801770 1876330 1290770 1582937 TRUE FALSE FALSE 1290977.11 1364720.213 1791976.552 1417698.967 1689469.394 1336352.56 1350948.089 1449130.619 1402654.983 1186559.272 1.088000524 1.150149214 1.510229277 1.194798272 1.423839022 1.126241724 1.13854244 1.221288016 1.182119609 1 20.17835274 -6.354058566 24.99998659 1.147774733 1.275376462 0.226330999 0.127848273 102.9841761 27792.1595 0.045419444 0.040056192 4.43E-07 6.354058566 0.127601728 DTNGSQFFITTVK ddPTM_HeLa_A485_30min_R1 1 DTNGSQFFITTVK 13 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 0 172.33 6.99E-07 21653000 17514 18445 17451 21360 26167 21885 28663 31912 17176 32232 FALSE FALSE TRUE 21409.92888 20601.9823 23906.8511 22526.84271 23561.7216 23030.86476 22538.91589 24085.53196 20623.06565 24197.15559 0.884811804 0.851421657 0.988002537 0.930970693 0.973739311 0.951800499 0.931469644 0.995386911 0.852292972 1 14.56254985 -4.753264884 24.99993624 0.951941242 0.868116702 0.399222407 0.041615923 165.3148942 505568.3966 0.009786838 0.024948561 1.76E-05 4.753264884 -0.08382454 DTPGHGSGWAET(ph)PR ddPTM_HeLa_A485_30min_R1 2 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 DTPGHGSGWAET(1)PR;DTPGHGSGWAET(1)PR ; 140.28 2.74E-06 1920430000 664050 1422300 1458200 341050 1545200 783200 1058780 1013460 986050 567520 TRUE FALSE FALSE 811765.6316 1588625.613 1997648.861 359680.6979 1391354.462 824207.1409 832563.0036 764907.346 1183941.19 426047.7084 1.905339744 3.728750516 4.688791469 0.844226341 3.265724554 1.934541894 1.954154399 1.795356085 2.77889346 1 18.70065547 -5.262293205 24.99837534 2.027852825 3.469739518 0.351796642 0.928577282 86.66003137 2537269.194 0.250596408 0.397662967 5.47E-06 5.262293205 1.441886693 DTPRPDHPPHDGHS(ph)PASR ddPTM_HeLa_A485_30min_R1 8 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(0.999)PAS(0.001)R;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(0.838)PAS(0.162)R;DTPRPDHPPHDGHS(0.965)PAS(0.035)R ;;;;;;; 215.84 1.81E-34 9800972000 987885.5 1448389 1367934 943668 1672265 1296196 1557156.9 1673853 1293226 1312466.2 TRUE FALSE FALSE 1207637.221 1617765.494 1873989.711 995218.1933 1505768.425 1364062.818 1224457.608 1263337.927 1552764.596 985292.5305 1.225663632 1.641913893 1.901962771 1.010073823 1.528245042 1.384424195 1.242735096 1.282195783 1.575942726 1 19.91019259 -12.89340515 0.145402773 2.33E-13 1.572776083 0.208532773 0.241174299 148.5926906 1.758551263 45.96835262 1.420995415 1.28E-13 12.89340515 1.572776083 DTPRPDHPPHDGHS(ph)PASR ddPTM_HeLa_A486_30min_R1 7 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(0.998)PAS(0.002)R;DTPRPDHPPHDGHS(0.988)PAS(0.012)R;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR;DTPRPDHPPHDGHS(1)PASR ;;;;;; 194.68 8.74E-19 8382710000 2429554 2483856 2086180 515591.6 2947554 2224850 2441152 2646979 2189773 2153113 TRUE FALSE FALSE 2259254.811 2287026.205 2894004.766 1200323.301 2577844.292 1950370.628 1830349.95 2044319.665 2379584.287 1613959.49 1.399821262 1.417028258 1.793108677 0.743713401 1.597217469 1.208438402 1.134074282 1.266648684 1.474376712 1 20.62217294 -5.229212969 24.99999098 1.228324152 1.52469018 0.277813606 0.243635594 949.3266842 736449.4735 0.063229691 0.109504999 5.90E-06 5.229212969 0.296366028 DTQS(ph)PSTCSEGLLGWSQK ddPTM_HeLa_A485_30min_R1 2 DTQSPSTCSEGLLGWSQK 18 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DTQS(0.979)PS(0.021)TCSEGLLGWSQK;DT(0.003)QS(0.894)PS(0.096)T(0.006)CSEGLLGWSQK ; 213.03 5.66E-26 271260000 202677 183329 159603 271670 219200 204437 252910 212845 202745 340140 TRUE FALSE FALSE 247761.7994 204767.7318 218646.7913 286510.6442 197375.6783 215141.0052 198873.7124 160644.43 243434.0618 255349.3578 0.970285579 0.801912069 0.856265288 1.122033933 0.772963285 0.842535916 0.778829891 0.629116248 0.953337278 1 17.96211291 DTQS(ph)PSTCSEGLLGWSQK ddPTM_HeLa_A486_30min_R1 2 DTQSPSTCSEGLLGWSQK 18 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DT(0.013)QS(0.986)PS(0.001)TCSEGLLGWSQK;DTQS(0.998)PS(0.002)TCSEGLLGWSQK ; 295.17 1.26E-78 391130000 275260 321490 178181 107977 282650 304070 332940 324980 236456 348460 TRUE FALSE FALSE 255965.6954 296013.9616 247177.4551 251375.9129 247197.4014 266556.935 249634.8905 250989.1483 256952.1965 261203.3479 0.979947989 1.133270166 0.946302783 0.962376305 0.946379146 1.020495859 0.955710915 0.960895602 0.983724744 1 17.99481386 -4.786033115 24.99998426 0.970482628 1.056609193 0.40447278 0.041040576 172.4510336 175299.475 0.009942165 0.020710836 1.64E-05 4.786033115 0.086126564 DTS(ph)GLER ddPTM_HeLa_A485_30min_R1 5 DTSGLER 7 0 Q9H307 Q9H307 PNN Pinin 1 0 DT(0.012)S(0.988)GLER;DT(0.135)S(0.865)GLER;DT(0.002)S(0.998)GLER;DT(0.002)S(0.998)GLER;DT(0.265)S(0.735)GLER ;;;; 142.04 0.0014607 7993700000 7525200 8108900 7072700 9816500 11208700 8743900 12106700 12257700 7929600 12820300 TRUE FALSE FALSE 9199154.778 9057165.317 9689186.05 10352750.54 10092722.47 9201717.083 9520004.642 9251479.856 9520997.985 9624435.15 0.955812433 0.941059416 1.006727761 1.075673572 1.048656084 0.956078662 0.98914944 0.961249124 0.989252651 1 23.19827044 -4.764335886 24.99981058 1.003970318 0.948435913 0.289635049 0.034388003 97.25604353 839452.8658 0.01018209 0.022787556 1.72E-05 4.764335886 -0.055534405 DTS(ph)GLER ddPTM_HeLa_A486_30min_R1 3 DTSGLER 7 0 Q9H307 Q9H307 PNN Pinin 1 0 DT(0.225)S(0.775)GLER;DT(0.002)S(0.998)GLER;DT(0.046)S(0.954)GLER ;; 131.62 0.0016572 7119030000 9760300 10408800 6977600 4447300 10827100 10966300 13298800 12928100 8421300 13328600 TRUE FALSE FALSE 9076153.372 9583968.78 9679513.587 10353539.15 9469064.159 9613389.403 9971299.58 9984653.848 9151265.065 9991031.805 0.908430035 0.959257158 0.968820215 1.036283274 0.947756382 0.962201862 0.998025006 0.999361632 0.915947946 1 23.25220225 -4.293217243 2.106137707 0.97950721 0.892089637 0.314642799 0.031332532 0.763347207 3.993534004 0.00824197 0.123638198 5.09E-05 4.293217243 -0.087417573 DTS(ph)PSSGSAVSSSK ddPTM_HeLa_A485_30min_R1 8 DTSPSSGSAVSSSK 14 0 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DT(0.002)S(0.589)PS(0.407)S(0.002)GSAVSSSK;DT(0.206)S(0.794)PSSGSAVSSSK;DTS(0.998)PS(0.001)S(0.001)GSAVSSSK;DTS(0.999)PSSGSAVSSSK;DT(0.013)S(0.972)PS(0.014)SGSAVSSSK;DT(0.001)S(0.968)PS(0.027)S(0.003)GS(0.001)AVSSSK;DTS(0.988)PS(0.012)SGSAVSSSK;DTS(0.994)PS(0.005)SGSAVSSSK ;;;;;;; 391.1 2.42E-125 40527660000 15882240 13875970 11594050 19295920 20529640 15631690 22564300 22191250 12944050 22792940 TRUE FALSE FALSE 19415189.49 15498643.99 15883171.56 20350007.25 18485636.96 16450141.12 17743252.97 16748811.14 15541802.11 17111079.53 1.134656026 0.90576658 0.928239012 1.189288333 1.080331426 0.961373658 1.036945269 0.978828432 0.908288812 1 24.02842745 -7.40760931 3.886975113 0.951058866 1.02974949 0.128483658 0.085881844 0.532002368 13.91197479 0.055462178 0.023910396 3.91E-08 7.40760931 0.078690624 DTS(ph)PSSGSAVSSSK ddPTM_HeLa_A486_30min_R1 10 DTSPSSGSAVSSSK 14 0 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DT(0.013)S(0.981)PS(0.005)S(0.001)GSAVSSSK;DT(0.046)S(0.841)PS(0.095)S(0.013)GS(0.004)AVSSSK;DTS(0.999)PSS(0.001)GSAVSSSK;DTS(1)PSSGSAVSSSK;DTS(0.999)PS(0.001)SGSAVSSSK;DTS(0.998)PS(0.002)SGSAVSSSK;DT(0.001)S(0.997)PS(0.002)SGSAVSSSK;DTS(0.934)PS(0.019)S(0.047)GSAVSSSK;DT(0.122)S(0.877)PS(0.001)SGSAVSSSK;DT(0.285)S(0.708)PS(0.006)S(0.001)GSAVSSSK ;;;;;;;;; 371.71 1.94E-109 34601590000 17412840 17871040 10324285 7637799 18338270 17994830 21874860 20141180 12863990 20513730 TRUE FALSE FALSE 16192289.84 16454873.71 14322124.65 17781182.06 16038113.18 15774810.83 16401538.66 15555472.99 13979051.01 15376958.49 1.053022927 1.070099378 0.931401659 1.156352349 1.042996454 1.02587328 1.066630873 1.011609221 0.909090769 1 23.87426684 -7.551667047 6.198264869 0.955001805 1.04814149 0.315838006 0.055548647 0.204453985 24.60465246 0.036340004 0.013752541 2.81E-08 7.551667047 0.093139686 DTSFTVCPDVPRT(ph)PVGK ddPTM_HeLa_A485_30min_R1 2 DTSFTVCPDVPRTPVGK 17 1 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;A0A3B3IT42;D6RD20 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 DTSFTVCPDVPRT(1)PVGK;DTSFTVCPDVPRT(1)PVGK ; 147.93 7.16E-08 873040000 799640 767000 572550 771850 882020 796400 1072920 968540 572880 957970 TRUE FALSE FALSE 977517.1593 856693.978 784360.0708 814014.2111 794202.9918 838098.2725 843681.877 731004.0464 687851.7612 719165.7091 1.359237721 1.191233073 1.090652767 1.131886853 1.10433935 1.165375743 1.173139746 1.016461209 0.956457952 1 19.45596471 -1 0.272939456 1.021216882 3.083071907 0.661291427 0.063831277 37.8637855 0.530412955 0.081844646 36.91685995 0.1 1 2.061855025 DTSFTVCPDVPRT(ph)PVGK ddPTM_HeLa_A486_30min_R1 1 DTSFTVCPDVPRTPVGK 17 1 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;A0A3B3IT42;D6RD20 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 DTSFTVCPDVPRT(1)PVGK 159.14 4.69E-09 537960000 407350 445590 247310 156100 453570 404430 511020 475290 359270 512440 TRUE FALSE FALSE 378796.8686 410279.8256 343075.0552 363408.6889 396679.0212 354535.5385 383157.391 367076.8425 390411.8129 384121.6886 0.986137674 1.068098568 0.893141589 0.946076985 1.032691027 0.922977143 0.997489604 0.955626442 1.016375343 1 18.5512039 -7.774576282 24.95811819 1.008187686 0.975573066 0.068974314 0.048351442 774.465102 1471318.791 0.045033638 0.011912612 1.68E-08 7.774576282 -0.032614619 DTSLDFRPVVS(ph)PANGVEGVRVDQDDDQDSSSLK ddPTM_HeLa_A486_30min_R1 1 DTSLDFRPVVSPANGVEGVRVDQDDDQDSSSLK 33 2 Q8ND24 Q8ND24 RNF214 RING finger protein 214 1 0 DTSLDFRPVVS(1)PANGVEGVRVDQDDDQDSSSLK 153.33 4.12E-10 468730000 171320 195810 115660 96770 222690 213270 279910 224520 147150 291360 TRUE FALSE FALSE 159311.3527 180293.3025 160446.6495 225285.4505 194758.1437 186958.9158 209873.5574 173401.6972 159905.0805 218401.5596 0.729442377 0.825512889 0.734640585 1.031519422 0.891743374 0.856032879 0.96095265 0.793958146 0.732160891 1 17.73662363 -5.205351425 24.99869507 0.887575089 0.769429976 0.314450755 0.088672573 406.5009139 181178.6108 0.024461115 0.042367879 6.23E-06 5.205351425 -0.118145112 DTSLYRPALEELRR ddPTM_HeLa_A485_30min_R1 1 DTSLYRPALEELRR 14 2 Q13200;C9JPC0;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 53.995 0.036111 205560000 27342 41343 34613 25010 41403 37482 44940 60658 29650 32925 FALSE FALSE TRUE 33424.13357 46177.70421 47417.78907 26376.23297 37280.77195 39444.49956 35338.20187 45781.53039 35600.48303 24717.40344 1.352251002 1.868226342 1.918396857 1.067111804 1.50828027 1.5958189 1.429689084 1.852198209 1.440300278 1 14.59323958 -8.022172218 22.94598642 0.999999976 1.57674811 0.326036116 0.247863308 732.3555162 757914.3797 0.242009317 0.062486537 9.50E-09 8.022172218 0.576748134 DTSPDKGELVS(ph)DEEEDT ddPTM_HeLa_A485_30min_R1 1 DTSPDKGELVSDEEEDT 17 1 Q9UPU7 Q9UPU7 TBC1D2B TBC1 domain family member 2B 1 0 DTSPDKGELVS(1)DEEEDT 239.86 3.30E-41 655060000 887890 810320 658200 1337100 1162800 1081800 1600200 1466500 895750 1875100 TRUE FALSE FALSE 1085398.067 905079.8752 901695.57 1410142.387 1047027.549 1138441.375 1258304.198 1106838.576 1075518.809 1407672.079 0.771058888 0.642962156 0.640557971 1.001754889 0.743800751 0.808740468 0.893890144 0.786290069 0.764040734 1 20.42487986 -14 0.030305549 2.15882417 3.01E-12 0.328294766 0.098647328 1773.183099 4.035434085 225.3262634 90.33723097 1.00E-14 14 -2.15882417 DTSPDKGELVS(ph)DEEEDT ddPTM_HeLa_A486_30min_R1 2 DTSPDKGELVSDEEEDT 17 1 Q9UPU7 Q9UPU7 TBC1D2B TBC1 domain family member 2B 1 0 DTSPDKGELVS(0.994)DEEEDT(0.006);DTSPDKGELVS(0.963)DEEEDT(0.037) ; 219.97 5.52E-33 1680970000 1152800 1170700 670250 584790 1180000 1397100 1632400 1529600 1015200 1830500 TRUE FALSE FALSE 1071994.673 1077929.468 929788.7499 1361420.674 1031993.397 1224740.007 1223956.254 1181343.471 1103198.353 1372130.885 0.781262695 0.785587935 0.67762395 0.992194468 0.752110027 0.892582493 0.8920113 0.860955382 0.804003733 1 20.38798667 -13.40738497 0.025044067 2.100342226 9.34E-07 0.340751615 0.079687191 2164.920689 4.496262184 264.6052294 132.9930085 3.91E-14 13.40738497 -2.100341291 DTSPS(ph)SGSAVSSSK ddPTM_HeLa_A485_30min_R1 1 DTSPSSGSAVSSSK 14 0 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DT(0.055)S(0.395)PS(0.546)S(0.004)GS(0.001)AVSSSK 99.991 0.00069892 217450000 248050 222530 190490 322710 311600 287920 410590 420140 246410 448190 TRUE FALSE FALSE 303227.8667 248552.9477 260960.178 340338.8302 280576.0099 302995.046 322864.0923 317100.0062 295862.2268 336464.4813 0.901218059 0.738719721 0.775595025 1.011514882 0.833894885 0.900526097 0.95957853 0.942447194 0.879326774 1 18.36009469 -5.242498198 24.80646462 0.925762994 0.798531799 0.455334722 0.063377758 662.2153309 867273.9009 0.016676214 0.028818341 5.72E-06 5.242498198 -0.127231195 DTSPSS(ph)GSAVSSSK ddPTM_HeLa_A485_30min_R1 1 DTSPSSGSAVSSSK 14 0 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 1 0 DTS(0.155)PS(0.01)S(0.835)GS(0.001)AVSSSK 348.19 6.48E-95 4959500000 1325800 1163300 908570 1597400 1661800 1440700 2019200 1999500 1134200 2020500 TRUE FALSE FALSE 1620719.636 1299337.816 1244687.852 1684661.917 1496345.357 1516132.824 1587781.425 1509119.49 1361823.537 1516826.535 1.068493726 0.856615958 0.820586813 1.110649029 0.98649735 0.999542657 1.046778513 0.994918968 0.897810993 1 20.53262468 -5.255543561 24.99425982 1.005680417 0.909370555 0.217090604 0.078027437 709.6132744 3008267.776 0.02131923 0.035679395 5.55E-06 5.255543561 -0.096309862 DTSQS(ph)DKDLDDALDKLSDSLGQR ddPTM_HeLa_A486_30min_R1 1 DTSQSDKDLDDALDKLSDSLGQR 23 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;A0A0C4DGD1 P20810-6 CAST Calpastatin 1 0 DT(0.01)S(0.061)QS(0.929)DKDLDDALDKLSDSLGQR 136.66 4.92E-07 68620000 59165 48862 18851 57878 39596 77606 106640 85461 41942 149380 TRUE FALSE FALSE 55017.83903 44989.99717 26150.61205 134742.909 34629.50046 68031.76076 79957.54408 66003.3959 45577.56633 111974.2757 0.491343558 0.401788687 0.233541248 1.203338072 0.309263 0.607565982 0.714070652 0.589451421 0.407036045 1 16.77280781 -11.55341046 2.056252444 7.089577494 0.556800439 0.214724563 0.257468845 10900064.67 511100.6095 310396639.4 0.063047107 2.80E-12 11.55341046 -6.532777054 DTSQSDKDLDDALDKLS(ph)DSLGQR ddPTM_HeLa_A486_30min_R1 1 DTSQSDKDLDDALDKLSDSLGQR 23 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;A0A0C4DGD1 P20810-6 CAST Calpastatin 1 0 DTSQSDKDLDDALDKLS(0.989)DS(0.01)LGQR 44.365 0.026028 72555000 62283 69081 37806 31683 66537 72999 78163 84863 60662 91000 TRUE FALSE FALSE 57917.28333 63606.76997 52445.49568 73759.62517 58191.30903 63993.12558 58605.79068 65541.54745 65920.231 68213.00769 0.849065087 0.932472737 0.768848896 1.081313193 0.853082293 0.938136695 0.859158578 0.960836498 0.966387984 1 16.05775926 -1.000002053 0.038404986 1.255296174 0.379137307 0.178438991 0.077323596 1515.323096 4.446833923 28.49058658 88.24259942 0.099999527 1.000002053 -0.876158867 DTSS(ph)DKDLDDALDKLSDSLGQR ddPTM_HeLa_A485_30min_R1 1 DTSSDKDLDDALDKLSDSLGQR 22 2 E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 E7EVY3 CAST 1 0 DT(0.002)S(0.044)S(0.954)DKDLDDALDKLSDSLGQR 163.31 4.09E-14 65869000 81006 33557 23853 199680 55840 41796 103340 48072 49957 276250 TRUE FALSE FALSE 99025.50523 37481.19924 32677.21731 210588.0128 50280.37353 43984.37393 81260.56479 36282.26663 59982.91167 207385.959 0.477493779 0.180731615 0.157567163 1.01544007 0.242448302 0.21208945 0.391832529 0.174950449 0.289233234 1 17.66195869 -10.3199585 3.145103771 1.00473989 0.347071155 0.39197098 0.243197044 48646649.98 65183316.61 2154995.19 0.062364398 4.79E-11 10.3199585 -0.657668734 DTSS(ph)DKDLDDALDKLSDSLGQR ddPTM_HeLa_A486_30min_R1 1 DTSSDKDLDDALDKLSDSLGQR 22 2 E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 E7EVY3 CAST 1 0 DT(0.029)S(0.153)S(0.818)DKDLDDALDKLSDSLGQR 173.86 1.24E-14 59426000 82993 79634 24891 70413 47371 104600 145880 121080 56424 196440 TRUE FALSE FALSE 77175.61928 73323.51182 34529.4618 163925.0225 41429.28746 91695.51549 109379.281 93512.72716 61314.87775 147250.1454 0.524112347 0.49795205 0.234495265 1.113241838 0.281353118 0.622719355 0.74281272 0.635060338 0.416399438 1 17.16790953 -14 0.261465151 3.756003934 0.535725581 0.228215143 0.237378191 300.4418931 2.951913596 445.987714 0.30474668 1.00E-14 14 -3.220278354 DTSS(ph)SPTTGSTVQSVDLIFTR ddPTM_HeLa_A485_30min_R1 2 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 0 DT(0.012)S(0.072)S(0.454)S(0.454)PT(0.007)T(0.001)GSTVQSVDLIFTR;DT(0.016)S(0.083)S(0.448)S(0.448)PT(0.002)T(0.002)GSTVQSVDLIFTR ; 83.253 0.002193 77764000 48657 54205 53370 56870 82458 56410 67507 59626 53098 84073 TRUE FALSE FALSE 59480.58179 60543.80323 73113.78391 59976.6641 74248.19199 59363.54037 53083.57797 45002.63001 63754.28156 63115.14835 0.942413721 0.959259462 1.158418951 0.950273677 1.176392577 0.94055931 0.841059228 0.713024229 1.010126463 1 15.94569869 -6.513594232 15.05081742 0.870512666 1.037260484 0.282859205 0.108909588 2.78123091 4510.839479 0.038998093 0.032135624 3.06E-07 6.513594232 0.166747818 DTSS(ph)SPTTGSTVQSVDLIFTR ddPTM_HeLa_A486_30min_R1 1 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 0 DT(0.033)S(0.033)S(0.43)S(0.43)PT(0.034)T(0.034)GS(0.003)T(0.003)VQSVDLIFTR 69.714 0.0061409 39233000 50068 53972 41426 22971 60062 52287 55530 63541 43670 58450 TRUE FALSE FALSE 46558.49175 49695.06216 57467.25663 53477.64889 52528.4639 45836.36156 41635.80666 49074.10139 47455.35076 43813.73955 1.062645924 1.134234664 1.31162638 1.22056801 1.198903915 1.046164103 0.950291098 1.120061923 1.083115736 1 15.41909574 -6.264638452 20.94789342 1.041828149 1.191687012 0.498342915 0.072936026 27.20831536 178159.7446 0.02690587 0.024808702 5.44E-07 6.264638452 0.149858863 DTSSS(ph)PTTGSTVQSVDLIFTR ddPTM_HeLa_A486_30min_R1 1 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 0 DT(0.018)S(0.018)S(0.083)S(0.655)PT(0.095)T(0.095)GS(0.015)T(0.019)VQS(0.001)VDLIFTR 56.482 0.026634 44049000 28471 31214 22342 8483.6 29785 27332 33805 36173 24982 31703 TRUE FALSE FALSE 26475.32992 28740.48896 30993.42074 19750.24954 26049.08757 23960.05573 25346.63145 27937.19755 27147.45987 23764.36245 1.114077013 1.209394488 1.304197443 0.831086867 1.096140813 1.008234737 1.066581588 1.175592133 1.142360117 1 14.53651208 -5.220229497 24.99980521 1.054438825 1.209240104 0.36355811 0.098667273 600.6538064 364383.3153 0.027362848 0.047393218 6.02E-06 5.220229497 0.154801279 DTTIINHS(ph)R ddPTM_HeLa_A485_30min_R1 1 DTTIINHSR 9 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 DTTIINHS(1)R 123.26 0.00050153 0 236790 292780 248330 234750 299580 258430 336690 321240 224330 291500 TRUE FALSE FALSE 289463.1186 327018.0742 340197.6009 247573.7981 269752.7633 271960.9952 264753.431 242455.3863 269350.9733 218834.4147 1.322749527 1.494363099 1.554589123 1.131329359 1.232679804 1.242770684 1.209834529 1.107939931 1.230843758 1 17.73948011 -5.199910467 0.234300739 1.002940155 1.689496323 0.567562631 0.105380876 5.297943109 0.37990437 0.200616865 1.057355916 6.31E-06 5.199910467 0.686556168 DTTIINHS(ph)R ddPTM_HeLa_A486_30min_R1 1 DTTIINHSR 9 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 DTTIINHS(1)R 122.46 0.00025179 277390000 264830 280990 203800 84679 259070 233040 267930 282840 240540 283870 TRUE FALSE FALSE 246266.7846 258723.3291 282716.818 197136.9914 226575.0249 204289.8942 200891.0801 218443.5064 261390.2009 212787.1043 1.157338859 1.2158788 1.328636991 0.926451779 1.064796786 0.960067081 0.944094243 1.026582448 1.228411852 1 17.6990512 -5.262143971 24.99995243 1.018614713 1.232144276 0.544630614 0.088996647 48.46948823 1719796.613 0.025124752 0.039952223 5.47E-06 5.262143971 0.213529563 DTTKLEPAS(ph)PPEDTSAEVSR ddPTM_HeLa_A485_30min_R1 2 DTTKLEPASPPEDTSAEVSR 20 1 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 0 DTTKLEPAS(1)PPEDTSAEVSR;DTTKLEPAS(1)PPEDTSAEVSR ; 151.95 5.58E-10 357710000 189570 205241 216459 281870 495750 352260 560440 707520 279240 540560 TRUE FALSE FALSE 231739.1925 229242.1496 296536.1917 297267.8444 446391.3893 370703.7889 440697.4156 533999.6107 335280.9067 405808.3403 0.571055766 0.564902509 0.730729663 0.732532614 1.100005458 0.913494751 1.085974269 1.315891167 0.826205066 1 18.63043899 -5.485912129 1.222761063 1.06667612 0.564923303 0.678554917 0.131486074 0.263752972 0.797378583 0.047923186 0.094554782 3.27E-06 5.485912129 -0.501752817 DTTKLEPAS(ph)PPEDTSAEVSR ddPTM_HeLa_A486_30min_R1 1 DTTKLEPASPPEDTSAEVSR 20 1 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 0 DTTKLEPAS(1)PPEDTSAEVSR 142.2 1.24E-09 179910000 138990 133680 139960 109290 275320 181560 268000 362450 137780 193280 TRUE FALSE FALSE 129247.5187 123086.7099 194156.2603 254432.6432 240786.7983 159160.9732 200943.5654 279928.0472 149722.8813 144881.43 0.892091683 0.849568575 1.340104528 1.756143926 1.661957633 1.098560203 1.386951837 1.932118197 1.033416645 1 17.14451317 -4.817283549 4.602551022 1.451455126 0.8657515 0.333014493 0.296550726 0.193438802 8.312704242 0.076726732 0.177097632 1.52E-05 4.817283549 -0.585703626 DTTS(ph)PMELAALEK ddPTM_HeLa_A485_30min_R1 4 DTTSPMELAALEK 13 0 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 DTT(0.006)S(0.994)PMELAALEK;DT(0.006)T(0.042)S(0.953)PMELAALEK;DT(0.001)T(0.131)S(0.868)PMELAALEK;DTT(0.025)S(0.975)PMELAALEK ;;; 205.27 1.29E-21 313622000 751960 604968 505831 998475 936588 715936 1012238 870531 693101 1340870 TRUE FALSE FALSE 919230.9078 675713.7451 692958.9363 1053019.161 843338.0102 753421.3019 795965.0821 657031.9073 832200.0132 1006615.786 0.913189442 0.671272748 0.688404599 1.046098398 0.837795336 0.748469587 0.790733757 0.652713693 0.826730541 1 19.9410817 -11.0675608 2.10262569 1.287109992 0.792991527 0.221974506 0.113611346 7816746.108 2228816.884 10766041.07 0.030978195 8.56E-12 11.0675608 -0.494118465 DTTS(ph)PMELAALEK ddPTM_HeLa_A486_30min_R1 2 DTTSPMELAALEK 13 0 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 DTT(0.001)S(0.999)PMELAALEK;DT(0.001)T(0.093)S(0.905)PMELAALEK ; 322.06 7.44E-69 218560000 709230 721740 417740 339830 726940 784040 962910 895120 636690 977110 TRUE FALSE FALSE 659516.6395 664546.6939 579500.1155 791141.4141 635760.4068 687313.1163 721979.7334 691320.7163 691878.8018 732435.2961 0.900443552 0.907311127 0.791196326 1.080151951 0.86800897 0.938394313 0.985724933 0.943865922 0.944627881 1 19.48234179 -1.000000133 0.142107351 1.007883021 0.547729482 0.174358732 0.067490343 131.1059159 1.239526927 0.272816736 12.29344654 0.099999969 1.000000133 -0.460153539 DTYS(ph)DR ddPTM_HeLa_A485_30min_R1 2 DTYSDR 6 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 DT(0.001)YS(0.999)DR;DTYS(1)DR ; 99.755 0.012221 1557600000 1674930 2078110 734240 2115830 533040 1532260 1214140 1425220 1369400 2122820 TRUE FALSE FALSE 2047512.4 2321126.887 1005865.93 2231412.435 479968.666 1612486.764 954729.0704 1075682.56 1644226.019 1593640.042 1.284802306 1.45649383 0.631175111 1.400198525 0.301177589 1.011826211 0.599087024 0.674984647 1.031742411 1 20.60389437 -4.754924551 24.99549136 0.819208868 1.370648269 0.355925314 0.28986428 150.6300224 577908.094 0.069911532 0.175916817 1.76E-05 4.754924551 0.551439401 DTYS(ph)DR ddPTM_HeLa_A486_30min_R1 2 DTYSDR 6 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 DTYS(1)DR;DT(0.001)YS(0.999)DR ; 102.51 0.011202 430760000 1073890 525020 571120 219350 284560 1194160 482630 435760 1284000 1364610 TRUE FALSE FALSE 998615.8566 483415.5031 792272.9591 510657.8853 248867.8314 1046836.681 361870.8693 336546.9606 1395298.154 1022902.774 0.976256866 0.472591839 0.774533982 0.499224265 0.243295685 1.023398027 0.353768587 0.32901168 1.364057454 1 19.96423759 -7.765399852 24.99996558 1.182028875 0.579435164 0.448508535 0.265213097 92.09305847 581285.8458 0.217678623 0.064377682 1.72E-08 7.765399852 -0.60259371 DTYSDRS(ph)GS(ph)SSPDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.044)Y(0.029)S(0.047)DRS(0.845)GS(0.374)S(0.334)S(0.306)PDS(0.018)EIT(0.002)ELKFPSINHD 56.663 0.018506 96666000 24914 26009 21374 26158 63586 32735 60908 72823 31521 49923 TRUE FALSE FALSE 30456.03335 29050.5263 29281.13205 27586.9453 57255.15458 34448.95398 47894.50823 54963.04507 37846.97557 37478.11486 0.812635146 0.775133072 0.781286149 0.736081455 1.527695691 0.919175207 1.277932692 1.466537078 1.009842029 1 15.19376077 -5.735841751 24.98759006 1.213359698 0.776558811 0.556036655 0.185344659 159.7141262 155907.0871 0.052332225 0.067535643 1.84E-06 5.735841751 -0.436800888 DTYSDRS(ph)GS(ph)SSPDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.025)Y(0.016)S(0.097)DRS(0.483)GS(0.475)S(0.469)S(0.432)PDS(0.003)EIT(0.001)ELKFPSINHD 76.97 0.028056 233990000 135510 142290 143490 26069 278560 163170 229420 237590 167030 110120 TRUE FALSE FALSE 126011.4488 131014.4222 199053.1708 60689.94945 243620.4073 143039.7444 172016.6894 183495.9436 181508.2949 82545.23524 1.52657447 1.58718334 2.411443498 0.735232619 2.951356388 1.732864943 2.083908162 2.222974385 2.198894877 1 16.33289732 -4.559392504 24.95718042 1.957833126 1.541725029 0.049027699 0.616457049 400.9497925 274048.1076 0.146655459 0.388016035 2.76E-05 4.559392504 -0.416108097 DTYSDRS(ph)GSS(ph)SPDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 2 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.026)Y(0.002)S(0.03)DRS(0.931)GS(0.013)S(0.541)S(0.457)PDSEITELKFPSINHD;DT(0.237)Y(0.142)S(0.279)DRS(0.328)GS(0.078)S(0.485)S(0.45)PDS(0.001)EITELKFPSINHD ; 130.33 3.99E-06 203947000 77437 88153 74219 32133 147668 107577 143070 151138 85809 89569 TRUE FALSE FALSE 72009.06619 81167.43523 102958.5845 74807.24791 129146.1025 94305.2435 107272.3728 116727.1767 93246.99321 67140.3394 1.072515671 1.208922027 1.533483229 1.114192281 1.923524719 1.40459885 1.597733549 1.738555059 1.388837084 1 16.03489221 -4.425604344 1.011566183 1.518548726 0.899500771 0.180928977 0.260919234 2.114719367 2.125049424 0.082749113 1.341741769 3.75E-05 4.425604344 -0.619047954 DTYSDRS(ph)GSSS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 3 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.021)Y(0.001)S(0.021)DRS(0.942)GS(0.016)S(0.167)S(0.832)PDSEITELKFPSINHD;DT(0.016)Y(0.042)S(0.017)DRS(0.589)GS(0.159)S(0.237)S(0.914)PDS(0.022)EIT(0.003)ELKFPSINHD;DT(0.007)Y(0.006)S(0.007)DRS(0.634)GS(0.365)S(0.147)S(0.787)PDS(0.044)EIT(0.003)ELKFPSINHD ;; 149.37 2.70E-09 1608020000 419962 494220 449213 488659 1144184 703196 1170031 1380880 605618 829572 TRUE FALSE FALSE 513381.098 552014.7299 615395.582 515353.2038 1030265.023 740014.2552 920044.3186 1042217.015 727159.9775 622774.9675 0.824344466 0.886379123 0.988150799 0.827511109 1.654313479 1.188253051 1.477330282 1.673504988 1.167612726 1 19.24835143 -5.746674081 24.99796768 1.391106602 0.889548895 0.565133984 0.204537931 162.4124182 274966.4717 0.057509052 0.073925448 1.79E-06 5.746674081 -0.501557708 DTYSDRS(ph)GSSS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DTYSDRS(0.975)GS(0.025)S(0.013)S(0.986)PDS(0.001)EITELKFPSINHD 193.75 5.34E-21 529610000 95446 101780 97293 11490 189760 123840 190250 190330 96394 84678 TRUE FALSE FALSE 88755.72828 93714.58212 134967.4552 26749.30067 165958.5314 108561.8799 142647.4377 146996.0139 104749.5095 63474.07764 1.398298827 1.476422905 2.126339763 0.421420865 2.614587522 1.710334107 2.247333763 2.315843244 1.65027226 1 15.95387991 -5.788781076 24.99994445 1.994430777 1.419298652 0.183086991 0.569147102 348.6356428 318773.9683 0.167075536 0.189490216 1.63E-06 5.788781076 -0.575132125 DTYSDRSGS(ph)SS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.004)Y(0.004)S(0.004)DRS(0.459)GS(0.523)S(0.137)S(0.867)PDS(0.001)EITELKFPSINHD 116.49 0.00013016 637610000 37224 50224 49854 40235 103960 61507 108180 146920 52168 71645 TRUE FALSE FALSE 45504.35038 56097.25991 68297.0692 42432.93617 93609.37737 64727.41141 85066.45925 110887.6396 62637.63909 53785.22003 0.846038193 1.042986528 1.269811096 0.788933022 1.740429384 1.203442347 1.58159545 2.061674928 1.164588321 1 15.71492216 -5.760516532 24.99997021 1.505095204 1.01115029 0.346625533 0.312672028 26.79736767 725926.5433 0.092073308 0.112067524 1.74E-06 5.760516532 -0.493944914 DTYSDRSGSS(ph)S(ph)PDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DTY(0.001)S(0.001)DRS(0.333)GS(0.406)S(0.435)S(0.75)PDS(0.035)EIT(0.039)ELKFPSINHD 93.968 0.010071 154450000 76615 116690 121520 68233 235680 118320 191940 234440 125000 140870 TRUE FALSE FALSE 93657.74243 130335.8804 166475.3049 71960.39601 212214.8717 124515.0522 150930.451 176943.2224 150086.3534 105753.7015 0.885621412 1.232447456 1.574179461 0.68045274 2.006689777 1.17740609 1.427188352 1.673163396 1.419206621 1 16.69034863 -4.345569008 3.131819971 1.388434851 0.851445799 0.148115495 0.346427277 0.518918918 8.128349034 0.084042111 0.60422136 4.51E-05 4.345569008 -0.536989052 DTYSDRSGSS(ph)SPDSEIT(ph)ELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.008)Y(0.001)S(0.012)DRS(0.065)GS(0.333)S(0.489)S(0.243)PDS(0.295)EIT(0.551)ELKFPS(0.001)INHD 119.96 8.07E-05 589380000 415920 424720 386550 65030 844710 569520 816170 861120 421410 405810 TRUE FALSE FALSE 386766.1558 391063.6404 536232.5122 151393.1264 738758.5952 499258.4129 611955.6334 665061.7741 457938.1581 304192.5346 1.271451833 1.285579348 1.762806286 0.497688501 2.428588841 1.64125794 2.011737843 2.186318527 1.50542208 1 18.21462522 -5.772154549 24.99941228 1.857964351 1.250068711 0.268820383 0.468521247 266.1507271 620950.811 0.136808376 0.15667191 1.69E-06 5.772154549 -0.60789564 DVDASPS(ph)PLSVQDLK ddPTM_HeLa_A485_30min_R1 2 DVDASPSPLSVQDLK 15 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 DVDASPS(1)PLSVQDLK;DVDASPS(1)PLSVQDLK ; 346.18 5.93E-104 238020000 297350 277410 193126 393550 401420 298700 464550 456670 252730 468130 TRUE FALSE FALSE 363494.4817 309850.6864 264571.344 415048.64 361453.2153 314339.4701 365295.0975 344670.9665 303450.5928 351433.8063 1.034318484 0.881675812 0.752834074 1.181015123 1.028510089 0.894448583 1.039442111 0.980756433 0.863464435 1 18.42289345 -5.244266096 24.91529162 0.996086165 0.888816127 0.190697992 0.102475302 1405.305036 2038837.158 0.028318386 0.048885899 5.70E-06 5.244266096 -0.107270039 DVDASPS(ph)PLSVQDLK ddPTM_HeLa_A486_30min_R1 2 DVDASPSPLSVQDLK 15 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 DVDASPS(1)PLSVQDLK;DVDASPS(1)PLSVQDLK ; 244.05 2.46E-41 164755000 321450 301500 161589 145151 326770 330870 410180 402440 252130 454130 TRUE FALSE FALSE 298918.015 277608.042 224160.5883 337918.8635 285783.4596 290050.6234 307548.6256 310813.1972 273984.8314 340412.8921 0.878104272 0.815503902 0.658496178 0.992673519 0.839520083 0.852055343 0.903457632 0.913047668 0.804860326 1 18.37692615 -14 0.106385849 1.465680099 0.76234419 0.236034382 0.081996129 254.4628245 1.812264707 26.09155038 1.148314053 1.00E-14 14 -0.703335908 DVDDFFEHER ddPTM_HeLa_A485_30min_R1 2 DVDDFFEHER 10 0 G3V5X9;A0A0A0MRI2;Q9UNH7-2;Q9UNH7 G3V5X9 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 0 0 ; ; 126.67 0.0003648 134844000 148897 159766 159680 155235 177454 155637 180743 166518 154342 210769 FALSE FALSE TRUE 182018.624 178449.2439 218752.2768 163715.095 159786.0567 163785.9127 142125.7815 125679.1994 185317.0237 158228.1672 1.150355383 1.127796947 1.382511601 1.034677313 1.009845842 1.03512488 0.898233128 0.794290938 1.171201228 1 17.27164692 -5.461607261 7.60435143 0.976933387 1.211658322 0.475732546 0.11059069 0.252609086 28.06725683 0.031444843 0.046498348 3.45E-06 5.461607261 0.234724935 DVDDFFEHER ddPTM_HeLa_A486_30min_R1 2 DVDDFFEHER 10 0 G3V5X9;A0A0A0MRI2;Q9UNH7-2;Q9UNH7 G3V5X9 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 0 0 ; ; 135.66 0.00015649 98744000 200198 240310 172452 71991 237110 232790 240870 238320 211500 247160 FALSE FALSE TRUE 186165.154 221266.9604 239230.0328 167598.6862 207369.4528 204070.7366 180601.7783 184059.7385 229832.9903 185269.5273 1.004834183 1.194297647 1.291254079 0.904620899 1.11928527 1.101480312 0.974805631 0.993470115 1.24053315 1 17.49926608 -5.255332321 24.97868275 1.049651144 1.166545521 0.191234464 0.108950109 831.9633522 3402831.8 0.029473303 0.049417507 5.55E-06 5.255332321 0.116894377 DVDDGS(ph)GS(ph)PHS(ph)PHQLSSK ddPTM_HeLa_A485_30min_R1 2 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 3 0 DVDDGS(1)GS(1)PHS(0.999)PHQLS(0.001)SK;DVDDGS(1)GS(1)PHS(1)PHQLSSK ; 100.19 0.00026133 2038980000 1343220 1314840 1015750 1808680 1860410 1612270 2252200 2193900 1309250 2319800 TRUE FALSE FALSE 1642014.655 1468599.1 1391518.194 1907483.609 1675181.048 1696685.964 1770999.071 1655842.585 1572004.466 1741516.553 0.942864799 0.843287477 0.799026683 1.095300303 0.961909346 0.97425773 1.016929221 0.950804965 0.902664097 1 20.73191275 -5.246317089 24.9859639 0.983729098 0.859882438 0.495980275 0.057359714 690.8087368 1141394.046 0.015674144 0.02701822 5.67E-06 5.246317089 -0.123846661 DVDDGS(ph)GS(ph)PHS(ph)PHQLSSK ddPTM_HeLa_A486_30min_R1 2 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 3 0 DVDDGS(1)GS(1)PHS(0.998)PHQLS(0.002)SK;DVDDGS(1)GS(1)PHS(1)PHQLSSK ; 119.76 2.95E-05 2496700000 2318100 2283700 1228270 721480 2270100 2441900 2994600 2916600 1860550 2891900 TRUE FALSE FALSE 2155613.161 2102731.295 1703889.038 1679641.902 1985362.89 2140643.205 2245319.406 2252553.849 2021823.972 2167749.417 0.994401449 0.970006625 0.786017528 0.774832132 0.915863649 0.98749569 1.035783651 1.039120957 0.932683435 1 21.04776657 -6.209837913 3.610569424 1.00505718 0.877930372 0.388779975 0.070019093 0.265788266 7.105877537 0.027144973 0.026344327 6.17E-07 6.209837913 -0.127126808 DVDDGS(ph)GSPHS(ph)PHQLSSK ddPTM_HeLa_A485_30min_R1 2 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.798)GS(0.203)PHS(0.999)PHQLSSK;DVDDGS(0.763)GS(0.258)PHS(0.979)PHQLSSK ; 127.3 1.02E-05 2223630000 1219400 1366430 985040 1276640 1711350 1403460 1953900 1970150 1174050 1835250 TRUE FALSE FALSE 1490651.323 1526222.102 1349447.287 1346379.611 1540961.985 1476942.995 1536433.303 1486967.623 1409671.066 1377755.95 1.081941488 1.107759398 0.979453064 0.977226489 1.11845787 1.071991738 1.115170871 1.079267793 1.023164564 1 20.39388893 DVDDGS(ph)GSPHS(ph)PHQLSSK ddPTM_HeLa_A486_30min_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.585)GS(0.415)PHS(1)PHQLSSK 180.66 9.83E-18 256360000 476990 469280 297800 117710 483380 515990 614810 583930 412870 555260 TRUE FALSE FALSE 443555.4642 432092.5437 413116.1354 274034.8287 422749.9731 452332.4 460978.0352 450981.8861 448657.904 416219.2819 1.065677357 1.038136777 0.992544443 0.658390518 1.015690506 1.086764645 1.107536472 1.083519927 1.077936375 1 18.66698428 -5.99494862 24.99987074 1.075599127 0.93556312 0.253498244 0.106981627 202.4552295 1001961.929 0.035430874 0.040044343 1.01E-06 5.99494862 -0.140036007 DVDDGSGS(ph)PHS(ph)PHQLSSK ddPTM_HeLa_A485_30min_R1 3 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.002)GS(0.998)PHS(1)PHQLSSK;DVDDGS(0.049)GS(0.951)PHS(0.998)PHQLS(0.001)SK;DVDDGS(0.121)GS(0.879)PHS(0.998)PHQLS(0.002)SK ;; 196.18 4.57E-19 5174980000 2324510 2437590 1931240 2790980 3264520 2761700 3743160 3925430 2331030 3896160 TRUE FALSE FALSE 2841589.23 2722644.946 2645686.042 2943444.17 2939492.926 2906298.342 2943403.287 2962712.138 2798846.34 2924919.016 0.971510396 0.930844557 0.904533092 1.006333562 1.004982672 0.993633781 1.006319584 1.012921083 0.956897037 1 21.47996525 -5.274491379 24.96236745 0.998380014 0.935150869 0.644239691 0.02098888 436.5946057 834999.7642 0.005873282 0.008773584 5.32E-06 5.274491379 -0.063229145 DVDDGSGS(ph)PHS(ph)PHQLSSK ddPTM_HeLa_A486_30min_R1 5 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.082)GS(0.918)PHS(1)PHQLSSK;DVDDGS(0.006)GS(0.994)PHS(1)PHQLSSK;DVDDGS(0.093)GS(0.907)PHS(1)PHQLSSK;DVDDGS(0.039)GS(0.961)PHS(1)PHQLSSK;DVDDGS(0.443)GS(0.557)PHS(1)PHQLSSK ;;;; 205.63 2.19E-25 8083550000 9226920 9423640 5273840 1553707 9137330 9379890 11147190 10992390 7329530 9089530 TRUE FALSE FALSE 8580160.556 8676876.446 7316012.086 3617108.416 7991240.869 8222694.54 8358045.159 8489662.759 7964859.562 6813452.525 1.259297034 1.273491877 1.073759898 0.530877467 1.172862193 1.206832294 1.226697497 1.246014811 1.168990249 1 22.6999546 -5.961775514 24.99982954 1.188780163 1.028954657 0.094943344 0.201000861 382.2054105 249970.8303 0.067108279 0.076093503 1.09E-06 5.961775514 -0.159825506 DVDDGSGSPHS(ph)PHQLSSK ddPTM_HeLa_A485_30min_R1 4 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 DVDDGSGSPHS(1)PHQLSSK;DVDDGSGSPHS(1)PHQLSSK;DVDDGSGS(0.001)PHS(0.999)PHQLSSK;DVDDGSGS(0.001)PHS(0.999)PHQLSSK ;;; 235.35 2.63E-45 4729610000 2611290 2925540 2327180 2183800 3824920 2945350 4066250 4270590 2686540 3702660 TRUE FALSE FALSE 3192162.452 3267656.454 3188100.724 2303095.464 3444097.535 3099563.972 3197462.469 3223221.106 3225703.936 2779655.004 1.14840239 1.175561877 1.146941156 0.828554429 1.239037769 1.115089451 1.150309108 1.159575955 1.16046917 1 21.4064744 DVDDGSGSPHS(ph)PHQLSSK ddPTM_HeLa_A486_30min_R1 4 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 DVDDGSGSPHS(1)PHQLSSK;DVDDGS(0.002)GS(0.03)PHS(0.969)PHQLSSK;DVDDGSGSPHS(1)PHQLSSK;DVDDGSGSPHS(1)PHQLSSK ;;; 290.49 1.26E-78 4958240000 4043720 3863730 2441400 336301 4071550 3557960 4254010 4235360 3418400 3228860 TRUE FALSE FALSE 3760276.11 3557553.963 3386775.463 782925.7237 3560858.233 3119015.07 3189611.704 3271060.985 3714709.664 2420332.44 1.55361968 1.469861704 1.399301768 0.32347859 1.471226917 1.288672175 1.317840331 1.351492436 1.534793156 1 21.20677379 DVDELPSLQPSVGS(ph)PSRPSSSR ddPTM_HeLa_A485_30min_R1 3 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 DVDELPSLQPS(0.001)VGS(0.978)PS(0.021)RPSSSR;DVDELPSLQPS(0.158)VGS(0.838)PS(0.004)RPSSSR;DVDELPSLQPS(0.002)VGS(0.992)PS(0.006)RPSSSR ;; 243.97 3.55E-47 1644300000 1175210 1150400 1111520 1240350 1598000 1290370 1465210 1355740 1181210 1529450 TRUE FALSE FALSE 1436631.41 1284929.273 1522717.502 1308107.18 1438897.509 1357931.778 1152155.914 1023242.639 1418268.012 1148186.262 1.251218079 1.119094797 1.3261938 1.139281337 1.253191713 1.182675514 1.003457324 0.891181747 1.235224683 1 20.13092527 -6.699630393 5.146212327 1.023322003 1.213744948 0.452763015 0.096828952 0.17392234 9.061162046 0.036304523 0.027348796 2.00E-07 6.699630393 0.190422945 DVDELPSLQPSVGS(ph)PSRPSSSR ddPTM_HeLa_A486_30min_R1 4 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 DVDELPSLQPS(0.001)VGS(0.973)PS(0.026)RPSSSR;DVDELPSLQPS(0.002)VGS(0.979)PS(0.019)RPSSSR;DVDELPSLQPS(0.009)VGS(0.961)PS(0.031)RPSSSR;DVDELPSLQPS(0.009)VGS(0.956)PS(0.035)RPSSSR ;;; 240.08 5.18E-47 2221780000 1547340 1779020 1344210 638436 1877270 1750490 2014040 1972480 1462390 1894150 TRUE FALSE FALSE 1438879.456 1638043.976 1864724.111 1486311.273 1641805.292 1534532.341 1510105.89 1523389.363 1589151.143 1419842.511 1.013407787 1.153680048 1.313331652 1.046814179 1.156329155 1.080776445 1.06357281 1.072928406 1.119244656 1 20.43729948 -6.220320262 1.473023517 1.067939523 1.14838533 0.151032568 0.079609336 0.798555894 3.474993105 0.036030754 0.033703957 6.02E-07 6.220320262 0.080445807 DVDETGITVAS(ph)LER ddPTM_HeLa_A485_30min_R1 1 DVDETGITVASLER 14 0 Q8WU90;H7C466 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 0 DVDETGIT(0.001)VAS(0.999)LER 97.273 0.00042045 0 42423 38083 36111 48397 38859 35952 45284 44925 29124 56322 TRUE FALSE FALSE 51859.84999 42536.47557 49469.9616 51040.80556 34990.06152 37834.39113 35608.70346 33907.07331 34968.91966 42281.96193 1.226524211 1.006019438 1.170001564 1.207153198 0.827541105 0.894811627 0.84217245 0.801927625 0.827041085 1 15.3677547 -5.76575547 24.99997706 0.855969636 1.143222605 0.773453003 0.075879868 49.08516898 284314.6564 0.022666765 0.026600847 1.71E-06 5.76575547 0.287252969 DVDFEGTDEPIFGK(ac)KPR ddPTM_HeLa_A485_30min_R1 1 DVDFEGTDEPIFGKKPR 17 2 P42285;H0Y8U3 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 1 DVDFEGTDEPIFGK(0.886)K(0.114)PR 103.39 0.0023674 22078000 11345 7765.8 11004 15367 19576 11695 17350 17061 13735 23383 FALSE TRUE FALSE 13868.65611 8673.942757 15074.83751 16206.4603 17626.9447 12307.33212 13643.03076 12876.763 16491.48852 17554.04843 0.790054566 0.494127767 0.858767 0.92323206 1.004152676 0.701110753 0.777201386 0.733549474 0.939469239 1 14.09951617 -1.430479765 0.054701411 1.252212757 1.52E-22 0.21311844 0.13253435 701.0535088 3.115133756 16.51686991 73.52714298 0.037112502 1.430479765 -1.252212757 DVDFEGTDEPIFGK(ac)KPR ddPTM_HeLa_A486_30min_R1 2 DVDFEGTDEPIFGKKPR 17 2 P42285;H0Y8U3 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 1 ; DVDFEGTDEPIFGK(0.974)K(0.026)PR;DVDFEGTDEPIFGK(0.848)K(0.152)PR 191.96 6.83E-14 60474000 36801 48334 29217 19301.5 55449 49112 53214 54697 40224 52550 FALSE TRUE FALSE 34221.43994 44503.83781 40530.60486 44934.86744 48494.06938 43053.06077 39899.29436 42243.68713 43710.64871 39391.13796 0.868759871 1.129793149 1.028926986 1.140735449 1.231090847 1.092963113 1.012900272 1.072416013 1.109656917 1 15.26558347 -4.255994277 24.87211936 1.09482753 0.868759768 0.509326151 0.065322819 477.195712 2179661.653 0.016947188 0.143280856 5.55E-05 4.255994277 -0.226067762 DVDIIDHHDNTYTVK ddPTM_HeLa_A485_30min_R1 1 DVDIIDHHDNTYTVK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 151.07 9.62E-08 602610000 672980 688730 504550 768020 867710 804090 1017300 1065500 650590 1010300 FALSE FALSE TRUE 822682.0792 769270.9823 691204.0411 809974.9879 781317.7457 846190.909 799945.5444 804184.4544 781157.4454 758450.8032 1.084687465 1.014266158 0.911336685 1.067933457 1.03014954 1.115683319 1.054709865 1.060298771 1.029938187 1 19.53269608 DVDIIDHHDNTYTVK ddPTM_HeLa_A486_30min_R1 1 DVDIIDHHDNTYTVK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 113.72 0.00034919 298810000 196890 214500 127890 76361 226930 201750 238020 243160 168680 241850 FALSE FALSE TRUE 183089.0277 197502.2388 177412.433 177772.2671 198466.3234 176860.1362 178464.8785 187797.7761 183301.3182 181289.1858 1.009928016 1.089431992 0.978615642 0.980600504 1.094749929 0.975569146 0.984420983 1.035901702 1.011099021 1 17.46793334 DVDVSEDS(ph)PPPLPER ddPTM_HeLa_A485_30min_R1 2 DVDVSEDSPPPLPER 15 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 DVDVS(0.05)EDS(0.95)PPPLPER;DVDVSEDS(1)PPPLPER ; 178.47 1.12E-17 1325600000 1265340 1194530 1202220 1393230 1266740 1032680 1162110 930050 1135180 1804920 TRUE FALSE FALSE 1546810.518 1334219.892 1646971.207 1469338.627 1140618.918 1086749.528 913815.7049 701953.7792 1363000.214 1354986.661 1.141568815 0.984673821 1.215488871 1.084393426 0.841793466 0.802037067 0.674409373 0.518052169 1.005914119 1 20.36984722 -5.82777231 3.053962706 0.765799472 1.110452921 0.499747558 0.145439068 0.194906479 3.683043456 0.04659915 0.055818436 1.49E-06 5.82777231 0.344653449 DVDVSEDS(ph)PPPLPER ddPTM_HeLa_A486_30min_R1 2 DVDVSEDSPPPLPER 15 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 DVDVS(0.019)EDS(0.981)PPPLPER;DVDVS(0.003)EDS(0.997)PPPLPER ; 201.3 2.59E-25 1488470000 1446850 1634370 1122320 428130 1300040 1500690 1420170 1385760 1393860 1606740 TRUE FALSE FALSE 1345433.287 1504856.569 1556912.361 996708.2765 1136976.861 1315550.126 1064828.445 1070252.699 1514680.907 1204401.846 1.117096666 1.249463851 1.292685133 0.827554591 0.944017866 1.092285046 0.884113926 0.888617618 1.257620878 1 20.19988539 -5.249393583 24.99005641 0.978819341 1.22272009 0.436753448 0.122072803 689.8650768 1431182.846 0.032892649 0.056406262 5.63E-06 5.249393583 0.243900749 DVDVSEDS(ph)PPPLPERTPESFVLASEHNTPVR ddPTM_HeLa_A485_30min_R1 2 DVDVSEDSPPPLPERTPESFVLASEHNTPVR 31 1 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 DVDVS(0.001)EDS(0.999)PPPLPERTPESFVLASEHNTPVR;DVDVS(0.001)EDS(0.997)PPPLPERT(0.001)PESFVLASEHNTPVR ; 178.34 9.29E-17 366920000 149047 354440 286940 72042 334040 260230 301000 394290 224152 156282 TRUE FALSE FALSE 182201.9909 395888.6748 393091.0466 75977.47204 300781.8047 273855.2404 236688.8911 297589.7593 269137.2504 117323.7736 1.552984407 3.37432613 3.350480765 0.647588036 2.563690168 2.334183705 2.017399235 2.536483018 2.293970286 1 16.84013585 -10.74780509 2.112081414 0.61320191 2.318749291 0.207697946 0.758746081 2733437.715 1581628.902 5497205.224 0.204768686 1.79E-11 10.74780509 1.705547382 DVDVSEDS(ph)PPPLPERTPESFVLASEHNTPVR ddPTM_HeLa_A486_30min_R1 1 DVDVSEDSPPPLPERTPESFVLASEHNTPVR 31 1 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 DVDVS(0.062)EDS(0.937)PPPLPERTPESFVLASEHNTPVR 94.992 0.00014546 97889000 27725 26388 27327 3024.1 42746 21123 28667 31004 20411 18234 TRUE FALSE FALSE 25781.62067 24296.91878 37908.74624 7040.25763 37384.39809 18517.05902 21494.21339 23945.06601 22180.24191 13668.08772 1.886263917 1.777638488 2.773522312 0.515087244 2.735159363 1.35476589 1.572583805 1.75189584 1.622775795 1 13.73852379 -10.81133213 0.149707355 7.43E-13 2.135977892 0.15379451 0.603412288 78.24889691 1.803267817 32.15015551 3.649379636 1.54E-11 10.81133213 2.135977892 DVEDMELS(ph)DVEDDGSK ddPTM_HeLa_A486_30min_R1 2 DVEDMELSDVEDDGSK 16 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK ; 394.93 6.27E-135 2017620000 2436770 2306270 888090 1064470 1291250 2751860 3034000 2358500 1793680 4055000 TRUE FALSE FALSE 2265965.006 2123512.766 1231982.232 2478139.955 1129289.385 2412363.492 2274861.11 1821521.036 1949157.627 3039601.606 0.745480921 0.69861549 0.405310429 0.81528446 0.37152546 0.79364463 0.748407655 0.599263085 0.641254309 1 21.53545081 -14 0.398825426 6.700255962 0.636866147 0.34880072 0.144698863 816.5554504 5.755783842 4050.699322 0.088345686 1.00E-14 14 -6.063389815 DVES(ph)PSWR ddPTM_HeLa_A485_30min_R1 4 DVESPSWR 8 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 DVES(0.928)PS(0.072)WR;DVES(0.999)PS(0.001)WR;DVES(0.849)PS(0.151)WR;DVES(0.992)PS(0.008)WR ;;; 200.09 3.38E-09 3147680000 1109630 1131640 1134870 1278980 1502810 1073940 1345750 1250070 1149170 1823780 TRUE FALSE FALSE 1356463.365 1263975.454 1554705.639 1348847.439 1353184.96 1130169.838 1058219.519 943488.3725 1379797.878 1369145.21 0.9907374 0.923185828 1.13553013 0.985174859 0.988342909 0.825456518 0.772905248 0.689107602 1.007780525 1 20.38484403 -6.221400452 4.785115948 0.833784211 1.008162524 0.318018966 0.103468576 0.215472293 11.99122285 0.034707366 0.033875507 6.01E-07 6.221400452 0.174378313 DVES(ph)PSWR ddPTM_HeLa_A486_30min_R1 4 DVESPSWR 8 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 DVES(0.997)PS(0.003)WR;DVES(0.888)PS(0.112)WR;DVES(0.996)PS(0.004)WR;DVES(1)PSWR ;;; 204.34 1.41E-06 3348990000 1366480 1646480 1466870 560116 1982000 1426380 1582720 1611080 1457070 1619470 TRUE FALSE FALSE 1270696.809 1516006.928 2034881.348 1303978.355 1733399.079 1250407.738 1186706.716 1244272.254 1583370.001 1213944.171 1.046750616 1.248827553 1.676256122 1.074166659 1.427906752 1.030037268 0.977562844 1.024983095 1.304318632 1 20.21127064 -6.27628364 24.29715672 1.063328195 1.301165193 0.270557777 0.186486507 765.2792983 1252608.611 0.065551062 0.058070179 5.29E-07 6.27628364 0.237836998 DVFRDPALKR ddPTM_HeLa_A485_30min_R1 1 DVFRDPALKR 10 2 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 113.63 0.0004699 326760000 171590 151270 153830 207010 219480 192800 248490 222460 186940 312070 FALSE FALSE TRUE 209759.6035 168959.7106 210738.1184 218318.4321 197627.8006 202894.7099 195398.0815 167901.3362 224457.1433 234276.6922 0.89534986 0.721197269 0.899526608 0.931882852 0.84356578 0.866047356 0.83404832 0.716679643 0.958085677 1 17.8378539 -7.981403754 24.09060481 1.000000046 0.840497658 0.418260936 0.067165253 118.1028995 152996.3929 0.06518807 0.016832278 1.04E-08 7.981403754 -0.159502388 DVGPTPMYPPT(ph)YLEPGIGRHTPYGNQTDYR ddPTM_HeLa_A485_30min_R1 1 DVGPTPMYPPTYLEPGIGRHTPYGNQTDYR 30 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 DVGPTPMYPPT(0.211)Y(0.189)LEPGIGRHT(0.169)PY(0.189)GNQT(0.211)DY(0.03)R 76.198 0.0024541 97293000 22189 26541 23239 20181 28830 28618 38374 39152 22084 26361 TRUE FALSE FALSE 27124.8665 29644.73907 31836.07316 21283.43693 25959.58397 30116.39423 30175.08141 29549.91061 26516.05623 19789.68784 1.370656613 1.497989221 1.60872033 1.075481185 1.311773292 1.521822601 1.524788145 1.493197409 1.339892597 1 14.27246124 -8.096876247 6.208694344 1.000004624 1.424824779 0.446684428 0.141780941 1.241964568 79.00398007 0.145109484 0.037637917 8.00E-09 8.096876247 0.424820156 DVGPTPMYPPTYLEPGIGRHTPYGNQT(ph)DYR ddPTM_HeLa_A486_30min_R1 1 DVGPTPMYPPTYLEPGIGRHTPYGNQTDYR 30 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 DVGPTPMYPPTY(0.001)LEPGIGRHT(0.29)PY(0.322)GNQT(0.357)DY(0.03)R 101.32 0.00034434 77144000 61978 72969 59330 25952 81304 70714 69935 85391 67299 78618 TRUE FALSE FALSE 57633.66225 67186.67069 82304.16491 60417.56754 71106.09419 61990.02565 52436.5233 65949.33337 73132.53151 58931.54108 0.977976499 1.140079989 1.396606357 1.025216148 1.206588066 1.051898941 0.889787071 1.119083807 1.24097436 1 15.84675237 -6.280690984 22.67978232 1.057131429 1.155627979 0.098646321 0.133569602 606.7074283 714740.8711 0.04843257 0.042811046 5.24E-07 6.280690984 0.09849655 DVGRPNFEEGGPTS(ph)VGR ddPTM_HeLa_A486_30min_R1 1 DVGRPNFEEGGPTSVGR 17 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 DVGRPNFEEGGPT(0.192)S(0.808)VGR 71.001 0.0036259 126870000 91514 107050 103660 18941 143880 111790 108630 119150 92483 79392 TRUE FALSE FALSE 85099.34118 98566.96813 143799.9281 44095.60523 125833.2288 97998.4864 81449.62503 92022.14603 100499.5009 59511.72644 1.429959207 1.656261279 2.416329297 0.740956579 2.114427463 1.646708846 1.368631527 1.546285943 1.688734421 1 15.86088635 -11.6225355 0.278528393 1.33E-11 1.684830946 0.165198669 0.419912048 89.55744103 2.815108573 54.59224894 0.491430477 2.38E-12 11.6225355 1.684830946 DVGRPQPGR ddPTM_HeLa_A485_30min_R1 7 DVGRPQPGR 9 1 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ;;;;;; ;;;;;; 128.86 0.00033193 891503000 426373 544531 551628 473346 648040 501889 591666 537495 501676 628742 FALSE FALSE TRUE 521218.2029 608209.1637 755698.1524 499203.6934 583518.8622 528167.132 465251.7256 405673.5085 602357.7716 472008.1905 1.104256692 1.288556376 1.601027625 1.057616591 1.236247323 1.118978744 0.985685704 0.859462858 1.276159574 1 18.84845237 -6.070007761 1.317398524 1.023805879 1.302848307 0.298321738 0.165721876 0.518639563 1.852352118 0.073818944 0.078481258 8.51E-07 6.070007761 0.279042428 DVGRPQPGR ddPTM_HeLa_A486_30min_R1 4 DVGRPQPGR 9 1 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ;;; ;;; 109.44 0.0012433 664713000 382440 440848 342887 149936 522703 378904 416326 430146 349554 417429 FALSE FALSE TRUE 355632.9309 405913.5989 475662.0292 349058.5853 457140.7157 332158.6769 312156.8314 332211.1458 379853.6222 312902.0614 1.136563081 1.297254474 1.520162658 1.115552208 1.460970611 1.06154199 0.997618328 1.061709675 1.213969702 1 18.25535164 -6.287392052 24.27424989 1.066490387 1.306915464 0.462854008 0.128803087 481.4406001 450302.7427 0.044328419 0.03910851 5.16E-07 6.287392052 0.240425076 DVHGEQETEGRS(ph)SPGPDTLVVLEFNPASK ddPTM_HeLa_A485_30min_R1 1 DVHGEQETEGRSSPGPDTLVVLEFNPASK 29 1 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 DVHGEQET(0.044)EGRS(0.38)S(0.38)PGPDT(0.195)LVVLEFNPASK 54.855 0.015944 87534000 22266 32045 29251 30929 47220 36681 50074 57398 35460 41257 TRUE FALSE FALSE 27218.99488 35792.384 40072.16214 32618.57295 42518.611 38601.56044 39375.28083 43321.0505 42576.49674 30972.38918 0.878814828 1.155622312 1.293802745 1.053150042 1.372790803 1.246321691 1.271302663 1.398699024 1.374659749 1 14.91869505 -3.645679784 1.01522223 1.274725725 7.47E-13 0.431850204 0.126658773 5.114289521 1.761529955 0.038985701 9.562971587 0.00022611 3.645679784 -1.274725725 DVHGEQETEGRSS(ph)PGPDTLVVLEFNPASK ddPTM_HeLa_A486_30min_R1 1 DVHGEQETEGRSSPGPDTLVVLEFNPASK 29 1 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 DVHGEQET(0.002)EGRS(0.109)S(0.78)PGPDT(0.109)LVVLEFNPASK 146.57 1.84E-09 58228000 47525 42738 36776 21979 70134 47687 68217 71582 34225 50922 TRUE FALSE FALSE 44193.74292 39351.28523 51016.6521 51168.22276 61337.13975 41803.86279 51148.38507 55284.34122 37191.65056 38170.79975 1.157789284 1.030926401 1.336536107 1.34050696 1.606912618 1.095179117 1.339987252 1.448341182 0.974348214 1 15.22018179 -7.778799503 24.97425112 0.987173683 1.293952836 0.371729363 0.159825797 307.9946915 443068.0124 0.159208019 0.041502761 1.66E-08 7.778799503 0.306779153 DVHNIYGLYVHMATADGLR ddPTM_HeLa_A485_30min_R1 2 DVHNIYGLYVHMATADGLR 19 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 198.24 7.84E-23 46984000 14396.6 17414.3 17888.6 15194.5 18408.8 16186.9 21151.6 25840 12701.6 24706.8 FALSE FALSE TRUE 17599.074 19450.7509 24506.33755 16024.53706 16575.95523 17034.42105 16632.38787 19502.69948 15250.69461 18547.84945 0.948847145 1.048679576 1.321249539 0.863956606 0.8936861 0.918404104 0.896728643 1.051480363 0.822235195 1 14.1789643 -5.314915142 24.99999591 0.92082381 1.100502385 0.391340208 0.105844621 320.5750716 149868.6278 0.029582573 0.043878061 4.84E-06 5.314915142 0.179678575 DVHNIYGLYVHMATADGLR ddPTM_HeLa_A486_30min_R1 2 DVHNIYGLYVHMATADGLR 19 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 182.39 2.95E-18 51167000 23039 24254 20035.4 11856.3 29624 26551 29490 30236 22015 34048 FALSE FALSE TRUE 21424.08507 22332.02471 27793.64345 27602.06558 25908.28169 23275.40757 22111.29009 23351.92285 23923.27793 25522.15918 0.839430744 0.875005306 1.089000474 1.081494139 1.015128912 0.911968592 0.866356562 0.914966586 0.937353213 1 14.63946277 -6.274831839 23.77705361 0.917078616 0.985871036 0.094126351 0.080163438 930.550763 1652098.481 0.031221324 0.02771701 5.31E-07 6.274831839 0.06879242 DVIEEYFK ddPTM_HeLa_A485_30min_R1 1 DVIEEYFK 8 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 113.71 0.0089376 0 21759 18018 15392 22739 27459 19088 29676 27830 18723 34007 FALSE FALSE TRUE 26599.21448 20125.04836 21086.14131 23981.17399 24725.08555 20087.41816 23335.48017 21004.64886 22480.53436 25529.68075 1.041893737 0.78830004 0.825946142 0.939344844 0.96848393 0.786826062 0.914052956 0.822754075 0.880564649 1 14.63988788 -6.236157413 24.95508356 0.871837472 0.902527599 0.022023282 0.084830061 3520.20013 3474687.47 0.027574291 0.027567347 5.81E-07 6.236157413 0.030690127 DVLLQVDDERR ddPTM_HeLa_A485_30min_R1 1 DVLLQVDDERR 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 91.858 0.0061563 143960000 59099 64312 70032 77534 88681 58739 66656 54090 66892 95135 FALSE FALSE TRUE 72245.36866 71832.72896 95939.75107 81769.48609 79851.60826 61814.48321 52414.40107 40824.34269 80316.61083 71419.59533 1.01156228 1.005784598 1.343325325 1.144916682 1.118063017 0.86551153 0.73389384 0.57161263 1.124573872 1 16.12403234 -6.288574861 4.045499421 0.819669161 1.133683943 0.386685536 0.164322381 0.210268774 7.918654043 0.059212604 0.053967081 5.15E-07 6.288574861 0.314014782 DVLLQVDDERR ddPTM_HeLa_A486_30min_R1 3 DVLLQVDDERR 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;; ;; 207.47 1.54E-14 281153000 225330 308601 291194 107958 396823 299854 332276 340374 277938 270644 FALSE FALSE TRUE 209535.5306 284146.3329 403952.1152 251331.6799 347049.7591 262861.0622 249137.0303 262878.2705 302029.8896 202872.9808 1.032840991 1.400612007 1.991157786 1.238862262 1.710675112 1.295692808 1.228044412 1.295777631 1.488763503 1 17.63021721 -6.482420988 24.19919116 1.275519285 1.4879723 0.137511084 0.26526827 755.5253996 451906.2231 0.093196846 0.082178577 3.29E-07 6.482420988 0.212453016 DVLSLLNLS(ph)PR ddPTM_HeLa_A485_30min_R1 4 DVLSLLNLSPR 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 DVLSLLNLS(1)PR;DVLSLLNLS(1)PR;DVLS(0.002)LLNLS(0.998)PR;DVLSLLNLS(1)PR ;;; 204.18 8.94E-15 407524200 157205.1 211703.7 201430.8 167831.8 241079 192638 234695 266396 172270.2 224693 TRUE FALSE FALSE 192174.8321 236460.6061 275948.4352 177000.0263 217076.3283 202724.2278 184550.496 201061.9633 206843.249 168681.1703 1.139278509 1.40181981 1.635917244 1.04931704 1.286903144 1.201818955 1.094078821 1.191964479 1.22623793 1 17.36393941 -5.283368323 24.99932602 1.16357194 1.393286715 0.391640067 0.137662071 821.2227673 936204.4063 0.038605667 0.057315986 5.21E-06 5.283368323 0.229714775 DVLSLLNLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 DVLSLLNLSPR 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 DVLSLLNLS(1)PR;DVLSLLNLS(1)PR;DVLSLLNLS(1)PR;DVLSLLNLS(1)PR ;;; 159.66 9.48E-08 487816000 217252.3 224470.7 189957.1 83906 232845.6 193642.8 236358.5 232537.1 180542.2 235910.9 TRUE FALSE FALSE 202024.0357 206682.8242 263513.5763 195337.4084 203639.9336 169753.1202 177219.1034 179593.4786 196191.7433 176837.2751 1.142429024 1.168774084 1.490147234 1.104616706 1.151566792 0.959939696 1.002159207 1.0155861 1.109447899 1 17.43206288 -5.788190844 2.115942889 1.0218369 1.25452554 0.48674648 0.102759604 0.266603433 2.453644627 0.035417873 0.044832896 1.63E-06 5.788190844 0.232688639 DVMQNHLLQMLCLVAMEK(ac)PASTNSDDVRDEK ddPTM_HeLa_A486_30min_R1 1 DVMQNHLLQMLCLVAMEKPASTNSDDVRDEK 31 2 P11413-2;P11413;E7EM57;E7EUI8;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 1 DVMQNHLLQMLCLVAMEK(1)PASTNSDDVRDEK 41.734 0.018096 8198200 1915.9 3465.2 2691.7 1879.5 5374.9 4330.3 5403.4 5212 3166.1 3168.4 FALSE TRUE FALSE 1781.605304 3190.604932 3733.998326 4375.570985 4700.729923 3796.071613 4051.412169 4025.341377 3440.540097 2375.012017 0.750145806 1.343405805 1.572201866 1.842336356 1.97924469 1.598337855 1.705849124 1.694872004 1.448641132 1 11.2137191 -4.315866665 1.892402882 1.65818944 0.531835235 0.512042448 0.250026512 0.517657381 2.127422756 0.065260312 0.988840822 4.83E-05 4.315866665 -1.126354205 DVMQNHLLQMLCLVAMEKPASTNSDDVR ddPTM_HeLa_A486_30min_R1 1 DVMQNHLLQMLCLVAMEKPASTNSDDVR 28 1 P11413-2;P11413;E7EM57;E7EUI8;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 94.542 4.36E-05 4160200 3072 3363 2883.8 1949.1 3211.6 2922.6 3970.9 3204.4 3711 4223.8 FALSE FALSE TRUE 2856.668664 3096.503632 4000.484591 4537.603302 2808.771181 2562.039327 2977.33882 2474.828072 4032.672468 3166.132988 0.902257952 0.978008076 1.263523865 1.433168891 0.887129881 0.809201425 0.94037074 0.781656387 1.273690171 1 11.62850614 DVMSDETNNEETES(ph)PSQEFVNITK ddPTM_HeLa_A485_30min_R1 2 DVMSDETNNEETESPSQEFVNITK 24 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DVMSDETNNEET(0.001)ES(0.791)PS(0.208)QEFVNITK;DVMSDETNNEETES(0.824)PS(0.176)QEFVNITK ; 133.68 2.00E-06 251358000 58284 55458 49583.5 63949 75438 63144 83926 88659 53420 78197 TRUE FALSE FALSE 71249.07472 61943.33068 67926.49999 67442.37194 67927.12784 66450.1222 65994.52449 66915.24124 64140.904 58703.92701 1.213702019 1.055182061 1.157103169 1.148856224 1.157113864 1.131953612 1.124192671 1.139876745 1.092616921 1 15.8411694 -8.167094731 1.820022038 0.999939997 1.13937508 0.575818355 0.036975487 0.438037584 2.792970987 0.033098767 0.009335702 6.81E-09 8.167094731 0.139435083 DVMSDETNNEETES(ph)PSQEFVNITK ddPTM_HeLa_A486_30min_R1 2 DVMSDETNNEETESPSQEFVNITK 24 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DVMSDETNNEET(0.002)ES(0.975)PS(0.023)QEFVNITK;DVMSDETNNEET(0.098)ES(0.822)PS(0.079)QEFVNITK ; 211.87 2.26E-29 143644000 58150 59740 42926 28427.5 52837 57634 69514 71219 44870 64414 TRUE FALSE FALSE 54073.98529 55005.98483 59548.0968 66180.65665 46209.69077 50523.70306 52120.86196 55003.9884 48759.36773 48284.31514 1.119907886 1.139210211 1.233280344 1.370645032 0.957033162 1.0463792 1.079457414 1.139168864 1.009838652 1 15.55926699 -5.776845711 24.99999232 1.04803188 1.211544404 0.551420952 0.077947319 208.3995856 338170.475 0.02565062 0.029186201 1.67E-06 5.776845711 0.163512524 DVNAAIATIK ddPTM_HeLa_A485_30min_R1 4 DVNAAIATIK 10 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;Q6PEY2;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA3E;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain 0 0 ;;; ;;; 199.17 6.39E-14 622252000 964660 1036390 824960 1117390 1341710 1149260 1507590 1667010 956620 1465190 FALSE FALSE TRUE 1179245.289 1157586.795 1130147.033 1178430.186 1208124.641 1209433.477 1185481.081 1258173.184 1148604.859 1099945.098 1.072094681 1.052404159 1.027457676 1.071353642 1.098349948 1.099539858 1.077763866 1.143850894 1.044238355 1 20.06900008 -5.514503812 19.70369201 1.085549455 1.05059037 0.068472607 0.037209435 43.66339468 102726.3203 0.010165809 0.01386919 3.06E-06 5.514503812 -0.034959085 DVNAAIATIK ddPTM_HeLa_A486_30min_R1 2 DVNAAIATIK 10 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;Q6PEY2;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA3E;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain 0 0 ; ; 187.42 4.03E-08 284390000 291260 311930 204495 155062 435360 322890 356450 357530 264079 355010 FALSE FALSE TRUE 270844.1781 287211.5308 283680.9406 360992.1724 380753.0892 283055.1147 267262.4399 276128.2238 286969.5803 266113.1853 1.017778122 1.079283353 1.066016102 1.356536212 1.430793776 1.063664374 1.004318668 1.037634507 1.078374151 1 18.02168047 -6.4977593 24.98672462 1.03332849 1.19237583 0.288341619 0.121257086 1110.532756 1104667.419 0.048229776 0.042346925 3.18E-07 6.4977593 0.15904734 DVPDSQQHPAPEK(ac)SSK ddPTM_HeLa_A486_30min_R1 1 DVPDSQQHPAPEKSSK 16 1 O60885;O60885-2;O60885-3;M0QZD9 O60885 BRD4 Bromodomain-containing protein 4 0 1 DVPDSQQHPAPEK(1)SSK 72.315 0.0021885 0 4984.7 7213.5 5755 1721.6 8885.7 7345.7 7810.2 8196.5 6908.5 6155.2 FALSE TRUE FALSE 4635.298271 6641.875989 7983.490124 4007.971805 7771.17265 6439.46222 5856.005352 6330.335878 7507.334342 4613.897856 1.004638251 1.439536851 1.730313581 0.868673718 1.684296639 1.395666402 1.269210012 1.372014742 1.627113251 1 12.17177035 -10.11021643 4.279132906 0.99994428 1.380414773 0.155226373 0.263606809 34920121.66 27501686.26 17050.08159 0.060675636 7.76E-11 10.11021643 0.380470493 DVPGGGPSSSAPAGAEADGPKAS(ph)PEARPQIPTKPR ddPTM_HeLa_A485_30min_R1 1 DVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPR 35 3 Q8N3F8;B0QY86 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 DVPGGGPSS(0.001)SAPAGAEADGPKAS(0.772)PEARPQIPT(0.228)KPR 89.396 8.52E-05 306340000 301290 207890 127810 454950 245250 241830 363370 298950 207900 600710 TRUE FALSE FALSE 368310.9211 232200.9271 175092.2376 479802.7665 220832.0489 254491.8449 285733.031 225632.0438 249623.623 450964.0522 0.816719025 0.514898972 0.388262073 1.063949031 0.489688807 0.564328451 0.633604895 0.50033266 0.553533307 1 18.78265291 -11.08957638 2.409737078 1.641532722 0.609735779 0.283065195 0.184219154 20787486.44 6177003.025 73183054.97 0.0450657 8.14E-12 11.08957638 -1.031796943 DVPPDILLDS(ph)PER ddPTM_HeLa_A485_30min_R1 6 DVPPDILLDSPER 13 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER ;;;;; 202.63 1.63E-21 1006874000 750021 945121 815584 829408 1165795 952445 1196152 1447464 863956 1116793 TRUE FALSE FALSE 916860.5839 1055644.679 1117302.461 874716.4589 1049724.356 1002313.547 940584.3535 1092471.184 1037344.045 838397.0582 1.093587549 1.259122595 1.332665054 1.043320048 1.252061116 1.195511766 1.121884129 1.303047493 1.237294471 1 19.67727413 -10.76765504 2.621659981 0.949198465 1.206561614 0.32559683 0.088143234 15130284.97 10899176.73 4935638.708 0.022154734 1.71E-11 10.76765504 0.257363149 DVPPDILLDS(ph)PER ddPTM_HeLa_A486_30min_R1 8 DVPPDILLDSPER 13 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER ;;;;;;; 212.24 4.07E-22 1097426000 907679 982050 766092 358204.8 1011416 883145 1017736 1035898 772333 1092145 TRUE FALSE FALSE 844055.3894 904228.7814 1062743.339 833918.8771 884554.7742 774191.5491 763087.6883 800046.6389 839279.4463 818664.7833 1.031014655 1.104516525 1.298142244 1.018632894 1.080484702 0.945675892 0.932112513 0.977257915 1.025180835 1 19.64291331 -5.834422492 1.89427877 0.974837614 1.135326641 0.436296711 0.074798879 0.307612996 2.27191829 0.027069559 0.033575775 1.46E-06 5.834422492 0.160489026 DVPPDILLDS(ph)PERK ddPTM_HeLa_A485_30min_R1 8 DVPPDILLDSPERK 14 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK ;;;;;;; 228.46 2.54E-28 1824232000 1129697 1111648 820055 1644318 1444403 1165527 1822503 1849688 988707 2080133 TRUE FALSE FALSE 1380994.2 1241645.564 1123427.47 1734142.929 1300593.166 1226552.191 1433110.346 1396049.118 1187131.426 1561594.125 0.884348998 0.795114136 0.719410666 1.110495295 0.832862486 0.785448774 0.91772268 0.893989735 0.760204849 1 20.5745881 -11.48382014 2.317344569 2.884251023 0.857465784 0.148067836 0.10387971 5238004.409 1015295.5 51477723.8 0.026457856 3.28E-12 11.48382014 -2.026785239 DVPPDILLDS(ph)PERK ddPTM_HeLa_A486_30min_R1 6 DVPPDILLDSPERK 14 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK ;;;;; 239.18 1.75E-35 1631590000 1088669 1041579 558901 511591 913204 1128764 1439020 1368674 805108 1528780 TRUE FALSE FALSE 1012358.925 959040.4867 775322.4351 1191009.702 798661.439 989508.5741 1078961.976 1057056.808 874895.4097 1145963.537 0.883412859 0.836885691 0.676568154 1.03930855 0.696934425 0.863473001 0.941532554 0.922417489 0.763458331 1 20.12812971 -6.52258637 24.99845731 0.900689167 0.825624946 0.106468266 0.108968506 26.76378558 2288774.059 0.039672892 0.031079726 3.00E-07 6.52258637 -0.075064221 DVPPLS(ph)ETEATPVPIKDMEIAQTQK ddPTM_HeLa_A485_30min_R1 1 DVPPLSETEATPVPIKDMEIAQTQK 25 1 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DVPPLS(0.986)ET(0.01)EAT(0.004)PVPIKDMEIAQTQK 90.518 0.0015944 62283000 105550 68847 50602 111450 103740 85708 104360 89428 63133 146050 TRUE FALSE FALSE 129029.2334 76898.05776 69321.78552 117538.2313 93411.28135 90195.53835 82062.63346 67495.64278 75803.21401 109642.4229 1.176818516 0.701353142 0.632253317 1.072014173 0.851962944 0.822633576 0.748456951 0.615597877 0.691367557 1 16.74244659 -6.631188917 2.807556271 0.730595105 0.870997117 0.084130362 0.1753617 0.625442887 9.962149769 0.074952651 0.055211242 2.34E-07 6.631188917 0.140402012 DVRQS(ph)LS(ph)PMSQRPVLK ddPTM_HeLa_A485_30min_R1 1 DVRQSLSPMSQRPVLK 16 2 Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4;Q9NSV4-1 Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 2 0 DVRQS(1)LS(0.942)PMS(0.058)QRPVLK 65.454 0.0094314 104800000 47180 54480 41021 56484 70511 62908 80233 100650 52847 74982 TRUE FALSE FALSE 57675.02823 60850.96209 56196.37493 59569.57789 63490.67726 66201.76561 63090.56411 75965.42969 63452.90816 56290.36734 1.024598541 1.081019097 0.998330222 1.05825527 1.127913713 1.176076276 1.120805692 1.34952805 1.127242744 1 15.78060044 -5.873228437 2.249007058 1.174779863 1.037154688 0.284136697 0.083640501 0.337650169 3.488574965 0.027984644 0.03325341 1.34E-06 5.873228437 -0.137625175 DVS(ph)GLR ddPTM_HeLa_A485_30min_R1 1 DVSGLR 6 0 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 DVS(1)GLR 68.787 0.02947 525010000 581740 671310 617910 634510 880220 644410 817530 898160 623000 909080 TRUE FALSE FALSE 711146.056 749813.8649 846500.6224 669171.6746 792582.2062 678150.3112 642858.0369 677884.8517 748030.3855 682463.0864 1.042028602 1.098687797 1.240361038 0.980524351 1.161355423 0.993680574 0.941967485 0.993291601 1.096074499 1 19.38039149 -6.279782997 24.42796018 1.000643835 1.104913601 0.315242913 0.073246531 747.7962222 995827.2405 0.025591439 0.022614554 5.25E-07 6.279782997 0.104269766 DVS(ph)GLR ddPTM_HeLa_A486_30min_R1 1 DVSGLR 6 0 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 DVS(1)GLR 76.035 0.024335 897170000 1148000 1302700 961840 475380 1530300 1240100 1464400 1434700 971550 1432600 TRUE FALSE FALSE 1067531.128 1199469.308 1334290.207 1106708.664 1338355.505 1087109.07 1097991.631 1108050.129 1055764.736 1073867.635 0.994099359 1.116961968 1.242509005 1.030582008 1.246294665 1.012330603 1.02246459 1.031831199 0.983142337 1 20.03438475 -6.405453757 24.95357514 1.012708514 1.127003756 0.374988864 0.07492005 19.89986832 4180.024937 0.025655527 0.022626048 3.93E-07 6.405453757 0.114295242 DVSGFSDPYCLLGIEQGVGVPGGS(ph)PGSR ddPTM_HeLa_A485_30min_R1 1 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 0 K7EIH3;K7EQ37;K7EN81;Q70J99-2;Q70J99;Q70J99-3 K7EIH3 UNC13D Protein unc-13 homolog D 1 0 DVSGFSDPYCLLGIEQGVGVPGGS(0.863)PGS(0.137)R 217.4 2.42E-38 468680000 110770 149060 159320 116640 178290 115350 169070 168320 136820 160440 TRUE FALSE FALSE 135410.4043 166491.2704 218259.0979 123011.7479 160538.8216 121389.5476 132946.8133 127039.2561 164278.519 120445.2607 1.124248506 1.382298228 1.812102001 1.021308328 1.332877862 1.007839968 1.103794475 1.054746823 1.3639268 1 16.8780181 -5.310302137 24.99996607 1.131364216 1.433826205 0.346758132 0.196859571 421.4893482 215648.4202 0.05494622 0.08149856 4.89E-06 5.310302137 0.302461989 DVSGFSDPYCLLGIEQGVGVPGGS(ph)PGSR ddPTM_HeLa_A486_30min_R1 2 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 0 K7EIH3;K7EQ37;K7EN81;Q70J99-2;Q70J99;Q70J99-3 K7EIH3 UNC13D Protein unc-13 homolog D 1 0 DVSGFSDPYCLLGIEQGVGVPGGS(0.787)PGS(0.213)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.772)PGS(0.228)R ; 129.47 3.94E-06 748240000 282380 348040 282470 118512 362080 304340 348730 329070 298060 312490 TRUE FALSE FALSE 262586.6202 320460.0429 391849.9488 275901.9253 316664.5501 266793.6251 261474.0655 254147.9445 323896.0808 234240.47 1.121013035 1.368081454 1.672853324 1.177857632 1.351878051 1.138973232 1.116263409 1.08498734 1.382750302 1 17.83763083 -6.081858783 1.790647527 1.146500551 1.367382576 0.242928882 0.165502989 0.513665001 3.290473601 0.065152229 0.067693738 8.28E-07 6.081858783 0.220882025 DVSLGDWEFGKRDS(ph)LGAYASQDANEQGQDLGK ddPTM_HeLa_A485_30min_R1 1 DVSLGDWEFGKRDSLGAYASQDANEQGQDLGK 32 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DVS(0.024)LGDWEFGKRDS(0.971)LGAY(0.003)AS(0.001)QDANEQGQDLGK 92.283 0.00010202 197540000 21293 25682 18098 13344 30577 31066 48938 66308 19558 29024 TRUE FALSE FALSE 26029.55439 28685.2865 24793.20332 14072.94893 27532.64652 32692.56772 38481.99651 50045.85903 23483.1112 21788.85095 1.194627218 1.316512127 1.137884847 0.645878434 1.263611678 1.500426425 1.766132441 2.296856275 1.077758128 1 14.4113025 -6.244969341 3.107693789 1.636559263 1.08599973 0.218096795 0.38068429 0.326735479 6.467567819 0.137438216 0.129395247 5.69E-07 6.244969341 -0.550559533 DVSLGDWEFGKRDS(ph)LGAYASQDANEQGQDLGKR ddPTM_HeLa_A485_30min_R1 1 DVSLGDWEFGKRDSLGAYASQDANEQGQDLGKR 33 3 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DVSLGDWEFGKRDS(1)LGAYASQDANEQGQDLGKR 216.53 3.76E-38 501720000 199590 183890 106290 211310 271310 269310 434290 581860 160410 331090 TRUE FALSE FALSE 243988.1069 205394.3359 145611.0941 222853.3302 244297.4238 283410.6552 341500.3937 439157.9227 192602.8156 248555.3563 0.98162482 0.826352483 0.585829637 0.896594359 0.982869279 1.140231534 1.373940996 1.766841517 0.774889017 1 17.92320767 -6.154717592 1.85679655 1.285575692 0.80513506 0.325876772 0.259690297 0.356113367 2.428336418 0.101857656 0.100481927 7.00E-07 6.154717592 -0.480440632 DVSLGDWEFGKRDS(ph)LGAYASQDANEQGQDLGKR ddPTM_HeLa_A486_30min_R1 4 DVSLGDWEFGKRDSLGAYASQDANEQGQDLGKR 33 3 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DVSLGDWEFGKRDS(1)LGAYASQDANEQGQDLGKR;DVSLGDWEFGKRDS(1)LGAYASQDANEQGQDLGKR;DVSLGDWEFGKRDS(0.993)LGAYAS(0.007)QDANEQGQDLGKR;DVSLGDWEFGKRDS(1)LGAYASQDANEQGQDLGKR ;;; 251.28 1.20E-51 1729490000 312924 260604 148585 229280 321090 322276 504802 483404 199182 503308 TRUE FALSE FALSE 290989.6435 239952.7899 206121.0912 533775.4272 280815.8982 282516.8638 378495.2003 373343.4618 216447.2561 377276.4008 0.77129034 0.63601325 0.546339741 1.414812657 0.744324049 0.748832588 1.003230522 0.989575444 0.573710032 1 18.52526233 DVT(ph)PPPETEVVLIK ddPTM_HeLa_A485_30min_R1 6 DVTPPPETEVVLIK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK;DVT(0.993)PPPET(0.007)EVVLIK;DVT(1)PPPETEVVLIK;DVT(0.999)PPPET(0.001)EVVLIK;DVT(1)PPPETEVVLIK ;;;;; 169.4 2.06E-11 5876651000 1443230 1231345 759060 1833339 1233929 1077525 1636519 1227198 972884 2373554 TRUE FALSE FALSE 1764271.534 1375340.086 1039867.881 1933489.667 1111074.696 1133942.543 1286863.347 926225.7663 1168132.895 1781870.67 0.990123225 0.771851801 0.58358213 1.085089788 0.623543961 0.636377579 0.722197951 0.519805271 0.655565477 1 20.7649612 -4.300936219 3.783727171 0.71472585 1.008199289 0.168160983 0.170975483 0.379193137 10.17741223 0.042414767 0.286865268 5.00E-05 4.300936219 0.29347344 DVT(ph)PPPETEVVLIK ddPTM_HeLa_A486_30min_R1 4 DVTPPPETEVVLIK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DVT(0.998)PPPET(0.002)EVVLIK;DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK ;;; 220.21 5.24E-27 6014900000 2360470 2417120 1083371 869726 1671770 2287300 2571660 2155160 1933170 2951210 TRUE FALSE FALSE 2195013.242 2225578.608 1502881.265 2024766.082 1462081.018 2005116.182 1928203.468 1664477.115 2100738.732 2212207.807 0.992227419 1.006044098 0.679358088 0.915269386 0.660914862 0.906386902 0.871619502 0.752405407 0.949611843 1 21.07705548 -4.713813231 24.99962329 0.832617527 0.999136614 0.252461294 0.107237449 142.7662619 74937.86833 0.02521011 0.066699334 1.93E-05 4.713813231 0.166519087 DVTNFTVGGFAPMS(ph)PR ddPTM_HeLa_A485_30min_R1 13 DVTNFTVGGFAPMSPR 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR ;;;;;;;;;;;; 314.55 2.97E-78 13384134000 4055052 5253643 5198246 4490261 6403044 5381100 7001594 7294643 4819458 5790168 TRUE FALSE FALSE 4957084.328 5868010.848 7121293.512 4735552.588 5765534.457 5662846.075 5505646.244 5505620.367 5786679.014 4346785.678 1.140402287 1.349965534 1.638289541 1.089437791 1.326390322 1.302766342 1.266601726 1.266595773 1.331254735 1 22.05151753 -12.5663166 0.317645338 1.33E-09 1.32058616 0.295781152 0.138488449 147.0292647 3.093219336 97.00613857 0.127448653 2.71E-13 12.5663166 1.320586158 DVTNFTVGGFAPMS(ph)PR ddPTM_HeLa_A486_30min_R1 12 DVTNFTVGGFAPMSPR 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR ;;;;;;;;;;; 303.05 6.40E-68 10467004000 5280973 5768750 4872115 1924370 6347039 5483787 6032555 5869696 4657550 5961596 TRUE FALSE FALSE 4910804.064 5311613.241 6758728.408 4480030.612 5550934.185 4807253.115 4523145.933 4533294.355 5061270.184 4468773.558 1.098915396 1.188606487 1.512434747 1.002519048 1.242160542 1.075743278 1.012167181 1.014438144 1.132585959 1 22.09144751 -6.135375935 1.317114823 1.038315805 1.233283926 0.280285606 0.12768775 0.569480504 2.020471241 0.058097835 0.05835311 7.32E-07 6.135375935 0.194968121 DVTS(ph)PINER ddPTM_HeLa_A486_30min_R1 1 DVTSPINER 9 0 K7EJY2;K7ERF3;K7ELU8;D3DUE4;F6WF08;Q6ZW76-2;Q6ZW76 K7EJY2 ANKS3 Ankyrin repeat and SAM domain-containing protein 3 1 0 DVT(0.003)S(0.997)PINER 153.54 5.17E-05 761220000 1276200 1349600 1152200 408080 1403600 1343600 1548900 1405600 1137500 1365400 TRUE FALSE FALSE 1186744.97 1242652.781 1598362.697 950030.8632 1227547.4 1177840.293 1161348.837 1085575.564 1236099.416 1023494.953 1.159502514 1.214126926 1.561671304 0.928222324 1.199368298 1.150802248 1.134689364 1.060655513 1.207723998 1 19.96507256 -6.19919395 0.193622688 0.97793193 1.363626199 0.162535082 0.146987431 11.21437863 1.019955936 0.528196045 1.286046567 6.32E-07 6.19919395 0.385694268 DVVICPDASLEDAKK ddPTM_HeLa_A485_30min_R1 1 DVVICPDASLEDAKK 15 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 157.68 1.67E-07 0 14096 13153 12880 17784 19909 14614 21741 19952 13974 25535 FALSE FALSE TRUE 17231.60657 14691.12893 17644.84798 18755.49489 17926.79006 15379.16644 17095.85774 15058.74072 16778.45362 19169.59444 0.898903032 0.766376617 0.920460161 0.978398106 0.935167936 0.802268744 0.891821567 0.785553433 0.875263881 1 14.22653219 -4.787389118 24.99938814 0.891428972 0.832639646 0.115217938 0.070929183 476.4748388 459024.2172 0.019176305 0.039939011 1.63E-05 4.787389118 -0.058789326 DVVLST(ph)SPK ddPTM_HeLa_A486_30min_R1 2 DVVLSTSPK 9 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 DVVLS(0.101)T(0.601)S(0.299)PK;DVVLS(0.009)T(0.496)S(0.496)PK ; 88.596 0.018372 522860000 1730500 1607140 749540 1242030 1543930 1950360 2702300 2361800 1389320 3706900 TRUE FALSE FALSE 1609200.886 1479784.373 1039781.961 2891508.609 1350275.903 1709744.413 2026155.958 1824069.698 1509747.376 2778668.112 0.579126697 0.532551681 0.374201567 1.040609563 0.48594357 0.615310769 0.729182427 0.656454684 0.543334906 1 21.4059621 -14 0.263385977 3.464096107 0.592229121 0.312886536 0.16895455 250.9141028 2.46026457 335.5777847 0.21821394 1.00E-14 14 -2.871866986 DVVLSTS(ph)PK ddPTM_HeLa_A485_30min_R1 4 DVVLSTSPK 9 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 DVVLST(0.029)S(0.971)PK;DVVLS(0.003)T(0.145)S(0.851)PK;DVVLST(0.012)S(0.988)PK;DVVLS(0.002)T(0.019)S(0.98)PK ;;; 181.4 3.46E-08 1135160000 2648420 2384810 1630610 4650780 3474210 2758590 4486840 4289710 2191100 6191160 TRUE FALSE FALSE 3237551.892 2663692.784 2233840.494 4904840.335 3128305.454 2903025.507 3528189.98 3237651.896 2630833.672 4647817.752 0.696574622 0.573106117 0.480621361 1.055299626 0.673069733 0.624599686 0.759106783 0.696596138 0.566036323 1 22.14812207 -11.31517637 2.172323544 2.531487096 0.68345384 0.299122233 0.146633457 10843756.46 1452957.451 81464757.8 0.037190302 4.84E-12 11.31517637 -1.848033256 DVVMLDNLPDLPPALVPS(ph)PPKR ddPTM_HeLa_A485_30min_R1 2 DVVMLDNLPDLPPALVPSPPKR 22 1 H3BPY8;H3BPM3;H3BRE8;Q9BWH6-2;Q9BWH6 H3BPY8 RPAP1 RNA polymerase II-associated protein 1 1 0 DVVMLDNLPDLPPALVPS(1)PPKR;DVVMLDNLPDLPPALVPS(1)PPKR ; 169.7 3.11E-14 845510000 381210 325255 226105 592130 482870 390340 637150 619110 322678 795820 TRUE FALSE FALSE 466008.8493 363290.7429 309750.6485 624476.5625 434793.7673 410777.5988 501017.6975 467272.3018 387436.5148 597436.72 0.780013738 0.608082381 0.518466037 1.04525976 0.72776539 0.687566708 0.838612159 0.782128527 0.648497995 1 19.18842639 -14 0.234281081 2.402219363 0.711870868 0.241172679 0.136640768 252.4533971 2.525386716 168.7900519 0.233713316 1.00E-14 14 -1.690348495 DVVMLDNLPDLPPALVPS(ph)PPKR ddPTM_HeLa_A486_30min_R1 2 DVVMLDNLPDLPPALVPSPPKR 22 1 H3BPY8;H3BPM3;H3BRE8;Q9BWH6-2;Q9BWH6 H3BPY8 RPAP1 RNA polymerase II-associated protein 1 1 0 DVVMLDNLPDLPPALVPS(1)PPKR;DVVMLDNLPDLPPALVPS(1)PPKR ; 189.66 5.37E-20 697700000 289420 268720 147060 182741 268221 334903 421120 386350 227654 480290 TRUE FALSE FALSE 269133.1526 247425.6485 204005.5704 425430.2832 234578.2211 293586.0729 315751.3218 298386.539 247387.232 360022.2578 0.747545872 0.687250977 0.566647106 1.181677727 0.651565885 0.815466451 0.877032781 0.828800255 0.687144271 1 18.45772658 -13.98946792 0.027091201 2.087378832 3.04E-06 0.130733282 0.160726343 3960.549649 8.087260679 465.8372633 205.9285657 1.02E-14 13.98946792 -2.087375795 DVYLS(ph)PR ddPTM_HeLa_A485_30min_R1 11 DVYLSPR 7 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR ;;;;;;;;;; 140.88 0.0015103 1.49E+11 40127130 52341790 45334020 40178670 54185820 45371900 53726220 55231300 43346230 52899550 TRUE FALSE FALSE 49053271.63 58462707.03 62104960.5 42373529 48790889.5 47747502.53 42247174.19 41685737.08 52045420.77 39712665.73 1.235204707 1.472142601 1.563857761 1.067002888 1.228597693 1.202324287 1.063821162 1.049683679 1.310549665 1 25.24309587 -5.269261779 24.9996276 1.137931867 1.428575784 0.565937727 0.117086091 415.5918653 1328190.619 0.032580648 0.049336701 5.38E-06 5.269261779 0.290643916 DVYLS(ph)PR ddPTM_HeLa_A486_30min_R1 7 DVYLSPR 7 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR;DVYLS(1)PR ;;;;;; 124.81 0.0017652 1.59E+11 25957810 26893790 20733500 8882200 25721050 22572640 25448450 25937590 20670550 25885270 TRUE FALSE FALSE 24138301.57 24762628.13 28762066.46 20678210.48 22494876.07 19787857.18 19080978.64 20032166.97 22462289.92 19403429.91 1.244022406 1.2761985 1.482318673 1.065698723 1.159324726 1.019812336 0.983381739 1.032403398 1.157645325 1 24.20980836 -5.286178546 24.01967124 1.060404991 1.328381697 0.709161149 0.080509745 248.8220135 241584.8788 0.023218668 0.034459807 5.17E-06 5.286178546 0.267976706 DVYLS(ph)PRDDGYSTK ddPTM_HeLa_A485_30min_R1 2 DVYLSPRDDGYSTK 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DVYLS(1)PRDDGYSTK;DVYLS(1)PRDDGYSTK ; 110.74 0.00012899 1258190000 202736 319693 416920 241713 1121300 677950 1249260 2085410 516780 599960 TRUE FALSE FALSE 247833.9238 357078.3154 571156.0575 254917.1691 1009659.435 713446.4137 982345.3955 1573959.928 620493.0058 450401.0134 0.550251701 0.79280087 1.268105622 0.565978232 2.241689971 1.584024885 2.181046148 3.49457457 1.37764567 1 18.78085055 -5.764607426 24.99793324 2.094829596 0.828022469 0.433247569 0.655968898 73.63718254 581045.5221 0.19844429 0.234554885 1.72E-06 5.764607426 -1.266807128 DVYLS(ph)PRDDGYSTK ddPTM_HeLa_A486_30min_R1 4 DVYLSPRDDGYSTK 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DVYLS(0.688)PRDDGYS(0.156)T(0.156)K;DVYLS(1)PRDDGYSTK;DVYLS(1)PRDDGYSTK;DVYLS(1)PRDDGYSTK ;;; 198.85 1.26E-20 3191190000 1340460 1206243 1647450 1662920 5064890 2024470 4091830 4929400 1277112 2277670 TRUE FALSE FALSE 1246500.676 1110655.912 2285386.76 3871361.799 4429604.268 1774711.475 3068010.855 3807083.228 1387813.096 1707326.607 0.730089176 0.650523401 1.338576199 2.267499249 2.594468012 1.039468059 1.796967752 2.229850582 0.812857417 1 20.70330764 -4.912703372 3.948546691 1.749527812 0.696389534 0.317361761 0.563609006 0.234464539 6.944893739 0.150178702 0.338915966 1.22E-05 4.912703372 -1.053138278 DWEDDS(ph)DEDMSNFDR ddPTM_HeLa_A485_30min_R1 26 DWEDDSDEDMSNFDR 15 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6;Q15185-2 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 1 0 DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.993)DEDMS(0.007)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.996)DEDMS(0.004)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.999)DEDMS(0.001)NFDR;DWEDDS(1)DEDMSNFDR ;;;;;;;;;;;;;;;;;;;;;;;;; 344.18 1.41E-91 91900355000 5960714 5327777 4113111 7604064 5011104 4452033 6165315 4641997 4348535 9005965 TRUE FALSE FALSE 7286654.265 5950814.175 5634721.92 8019454.762 4512180.891 4685134.564 4848045.084 3503539.957 5221246.087 6760943.668 1.077756985 0.880175086 0.833422403 1.186144295 0.667389216 0.692970507 0.717066333 0.518202803 0.772265876 1 22.6887932 -5.788338809 24.96981045 0.701596089 0.974721067 0.435466153 0.146074163 190.5604299 176889.6523 0.043568879 0.049415446 1.63E-06 5.788338809 0.273124978 DWEDDS(ph)DEDMSNFDR ddPTM_HeLa_A486_30min_R1 23 DWEDDSDEDMSNFDR 15 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6;Q15185-2 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 1 0 DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.99)DEDMS(0.01)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.964)DEDMS(0.036)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR ;;;;;;;;;;;;;;;;;;;;;; 412.92 2.54E-152 22248863000 8245705 10280999 5420580 3391627 6698712 9575542 9664110 8380880 7752368 12231607 TRUE FALSE FALSE 7667723.66 9466295.196 7519573.744 7895879.059 5858497.078 8394208.985 7246047.461 6472736.577 8424349.5 9168732.993 0.83629043 1.032454016 0.820132264 0.861174501 0.638964738 0.915525514 0.790299758 0.705957582 0.918812829 1 23.12829095 -4.864577253 11.31463313 0.81634774 0.93424196 0.112638346 0.109382617 0.618362961 62.71148387 0.02695263 0.056176465 1.37E-05 4.864577253 0.11789422 DWHRPCLK ddPTM_HeLa_A485_30min_R1 3 DWHRPCLK 8 1 P50238 P50238 CRIP1 Cysteine-rich protein 1 0 0 ;; ;; 168.27 9.43E-05 2169101000 1176903 1395535 1108270 1163928 1542361 1328446 1678090 1784429 1231704 1546366 FALSE FALSE TRUE 1438701.012 1558730.679 1518265.192 1227510.439 1388798.123 1398001.378 1319552.363 1346794.99 1478895.695 1160885.415 1.239313539 1.342708469 1.307851035 1.05739156 1.196326619 1.204254408 1.136677527 1.160144638 1.2739377 1 20.14679415 -13.99999999 0.033483192 1.41E-07 1.861928087 0.409872297 0.078459401 1257.198362 3.15402591 143.9342092 52.47131234 1.00E-14 13.99999999 1.861927946 DWHRPCLK ddPTM_HeLa_A486_30min_R1 4 DWHRPCLK 8 1 P50238 P50238 CRIP1 Cysteine-rich protein 1 0 0 ;;; ;;; 154.49 0.00051571 1808566400 1721754 1726634.2 1148209.8 571136.7 1764840.8 1583609.5 1772802.2 1727948.6 1314232.8 1805314.9 FALSE FALSE TRUE 1601067.936 1589809.418 1592827.385 1329635.101 1543478.01 1388239.861 1329228.339 1334532.425 1428151.557 1353252.298 1.183125968 1.174806368 1.177036526 0.982547824 1.140569288 1.025854427 0.982247243 0.986166753 1.055347594 1 20.36799941 -5.197012969 0.725004388 1.006525425 1.221668268 0.642556773 0.049896793 0.687204011 0.596645248 0.025055719 0.100181813 6.35E-06 5.197012969 0.215142843 DWQSYYYHHPQDR ddPTM_HeLa_A485_30min_R1 2 DWQSYYYHHPQDR 13 0 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 ; ; 150.34 1.18E-07 697940000 198087 366810 360540 125694 345030 266270 316116 342560 238045 219499 FALSE FALSE TRUE 242150.7698 409705.2387 493918.7493 132560.3449 310677.6017 280211.4855 248575.2342 258546.6229 285818.448 164781.9389 1.469522518 2.486347967 2.997408288 0.804459189 1.885386249 1.700498777 1.508510191 1.569022823 1.734525337 1 17.3301986 -5.829404271 0.114514817 0.5185384 3.149240455 0.210011015 0.543099412 35.42088039 1.313684038 9.212726091 20.49159986 1.48E-06 5.829404271 2.630702055 DWQSYYYHHPQDR ddPTM_HeLa_A486_30min_R1 1 DWQSYYYHHPQDR 13 0 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 116.58 0.00034563 390760000 157150 181890 224760 17825 266440 128810 128630 147880 148750 88451 FALSE FALSE TRUE 146134.5965 167476.374 311793.0913 41497.50083 233020.6107 112918.7318 96445.41349 114210.9522 161643.7698 66302.29388 2.20406547 2.525951429 4.702598855 0.625883335 3.514518082 1.703089369 1.454631625 1.722579198 2.437981559 1 16.01677116 -6.132094941 1.053056913 1.663173913 2.835508265 0.176742683 1.038530012 0.926814926 2.177787867 0.528927808 0.543302712 7.38E-07 6.132094941 1.172334352 DWRPEAS(ph)K ddPTM_HeLa_A486_30min_R1 1 DWRPEASK 8 1 M0QZ32 M0QZ32 OCEL1 1 0 DWRPEAS(1)K 42.336 0.035255 189680000 251470 268910 139800 129440 243910 307480 358220 359160 194230 377360 TRUE FALSE FALSE 233843.2516 247600.5922 193934.304 301342.8615 213316.5334 269546.2438 268589.5671 277387.1084 211066.0128 282866.5998 0.826690927 0.875326364 0.685603405 1.065317933 0.754124148 0.952909407 0.94952733 0.980628708 0.746168027 1 18.10976231 -5.251527309 24.98340788 0.915967347 0.803818863 0.227646039 0.105202454 1126.569238 2839516.824 0.027275707 0.046523158 5.60E-06 5.251527309 -0.112148484 DWSHYFK ddPTM_HeLa_A485_30min_R1 2 DWSHYFK 7 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 138.62 0.0053737 1278400000 2108170 1984780 2026420 2511000 3020500 2611400 3546300 3520200 2279540 3390100 FALSE FALSE TRUE 2577125.143 2216882.756 2776077.084 2648169.572 2719768.414 2748128.866 2788604.034 2656865.431 2737022.769 2545010.46 1.012618684 0.871070194 1.090792014 1.040533865 1.06866689 1.07981044 1.095714174 1.043950692 1.07544657 1 21.27924016 -4.774694937 24.99999617 1.064765011 0.941844425 0.571590383 0.041501618 123.4572412 232841.4053 0.009932675 0.020869909 1.68E-05 4.774694937 -0.122920586 DWYPHSR ddPTM_HeLa_A485_30min_R1 6 DWYPHSR 7 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ;;;;; ;;;;; 143.61 0.0047181 2474350000 1266470 1358910 1388630 1493470 1642390 1152320 1405680 1134440 1361390 1804140 FALSE FALSE TRUE 1548191.882 1517822.704 1902342.023 1575054.484 1478867.885 1212653.693 1105344.985 856216.8113 1634608.486 1354401.101 1.143082268 1.12065968 1.404563258 1.162915833 1.091898023 0.89534311 0.816113472 0.632173741 1.20688656 1 20.36922362 -6.075438693 2.330755863 0.878634994 1.216029242 0.44849957 0.154731525 0.258798528 2.780180941 0.055821286 0.058085977 8.41E-07 6.075438693 0.337394247 DWYPHSR ddPTM_HeLa_A486_30min_R1 3 DWYPHSR 7 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ;; ;; 135.77 0.0055307 954240000 568450 671160 484484 176564 635510 567220 590280 608610 534350 573930 FALSE FALSE TRUE 528604.5905 617974.8373 672089.1797 411049.9151 555798.4099 497242.1635 442585.7007 470042.7889 580667.8882 430214.1923 1.228700958 1.436435265 1.562219917 0.955454103 1.291910913 1.155801395 1.028756625 1.092578528 1.349718114 1 18.71469559 -5.258043364 24.99345728 1.132987771 1.411850364 0.469423128 0.138278428 263.6414436 1940299.802 0.037415327 0.061626213 5.52E-06 5.258043364 0.278862593 DYAFIHFDER ddPTM_HeLa_A486_30min_R1 3 DYAFIHFDER 10 0 O60506-3;O60506;B7Z645;O60506-4;O60506-2;O60506-5 O60506-3 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ;; ;; 113.47 0.0020251 182604000 184048 252852 218857 93432 272929 241212 234561 227196 235577 209184 FALSE FALSE TRUE 171147.1856 232815.0866 303604.2916 217514.4178 238695.6999 211453.7159 175871.3569 175468.4305 255997.004 156802.9648 1.09147927 1.484762019 1.936215249 1.387183068 1.522265221 1.348531363 1.121607344 1.119037708 1.632603084 1 17.25859331 -6.457896157 3.746236313 1.227778214 1.503020569 0.201579723 0.247224155 0.392983794 10.82628597 0.094947857 0.079906299 3.48E-07 6.457896157 0.275242354 DYAFVHFEDR ddPTM_HeLa_A486_30min_R1 2 DYAFVHFEDR 10 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3;A0A286YEZ8 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 126.67 0.0003648 288783000 179162 270420 240690 87317 296310 251700 262100 275470 258220 229770 FALSE FALSE TRUE 166603.669 248990.9343 333891.6139 203278.3888 259144.0368 220647.8131 196519.8078 212751.4945 280602.7175 172234.0964 0.967309449 1.445654139 1.93859184 1.180244754 1.504603572 1.281092523 1.141004086 1.235246092 1.629193773 1 17.39401125 -6.357622804 6.897539616 1.263226144 1.426014673 0.06696006 0.275533644 0.777914715 48.03825152 0.098596357 0.086766609 4.39E-07 6.357622804 0.16278853 DYASHLS(ph)PGSIIQPQR ddPTM_HeLa_A485_30min_R1 2 DYASHLSPGSIIQPQR 16 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 DYASHLS(1)PGSIIQPQR;DYASHLS(0.999)PGS(0.001)IIQPQR ; 228.39 2.76E-34 774300000 221904 290155 284949 207538 333584 261148 306191 348183 264133 293194 TRUE FALSE FALSE 271265.7792 324086.1032 390363.4928 218875.2754 300371.2057 274821.3055 240770.7915 262790.5733 317142.0703 220106.1316 1.232431724 1.472408337 1.773523936 0.994407897 1.364665325 1.248585414 1.09388498 1.193926636 1.440859771 1 17.74783981 -5.270454202 24.9884642 1.204585526 1.490750041 0.366292961 0.181331487 704.6961004 1953367.823 0.050374413 0.07593086 5.36E-06 5.270454202 0.286164515 DYASHLS(ph)PGSIIQPQR ddPTM_HeLa_A486_30min_R1 2 DYASHLSPGSIIQPQR 16 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 DYASHLS(1)PGSIIQPQR;DYASHLS(1)PGSIIQPQR ; 260.31 8.15E-51 801570000 352900 384000 349440 102121 423790 341630 370380 351890 316630 323390 TRUE FALSE FALSE 328163.5324 353570.4415 484752.5263 237742.8489 370634.3065 299483.164 277707.0065 271772.3287 344075.7433 242411.0391 1.353748301 1.45855751 1.999713083 0.980742667 1.528949787 1.235435338 1.145603796 1.121121916 1.419389747 1 17.88709587 -5.278722141 24.99909249 1.22186837 1.589461489 0.40042477 0.223121977 840.4375432 1215670.446 0.061798507 0.091898336 5.26E-06 5.278722141 0.367593119 DYDDMS(ph)PR ddPTM_HeLa_A485_30min_R1 15 DYDDMSPR 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR ;;;;;;;;;;;;;; 176.65 3.27E-09 1.73E+11 39946760 45957130 41180640 48239050 59775750 47555320 61006240 64361370 41786810 61651760 TRUE FALSE FALSE 48832778.95 51331416.58 56415072.41 50874227.15 53824266.44 50045243.02 47971758.45 48576643.09 50173039.48 46283110.85 1.05508852 1.109074469 1.218912717 1.099196364 1.162935366 1.081285205 1.036485179 1.04955441 1.084046395 1 25.4639825 -6.492108668 4.531934074 1.047503096 1.131068475 0.455750699 0.044457296 0.200097656 9.820872235 0.016826868 0.014028563 3.22E-07 6.492108668 0.083565379 DYDDMS(ph)PR ddPTM_HeLa_A486_30min_R1 13 DYDDMSPR 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR ;;;;;;;;;;;; 163.86 3.59E-05 1.48E+11 46012640 51096110 38963580 18254530 55849140 49049880 57968910 58662720 40797550 55556670 TRUE FALSE FALSE 42787391.55 47047068.15 54051321.66 42497468.37 48844020.09 42998604.51 43464475.59 45306499.25 44333914.48 41644918.22 1.027433679 1.129719307 1.29790918 1.020471889 1.172868676 1.032505438 1.043692182 1.087923838 1.064569613 1 25.31163712 -6.270763425 24.81752788 1.051105575 1.132961588 0.233583212 0.075597909 978.9908616 2605742.669 0.026488331 0.023666941 5.36E-07 6.270763425 0.081856013 DYDEEEQGYDS(ph)EK ddPTM_HeLa_A485_30min_R1 2 DYDEEEQGYDSEK 13 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK ; 332.02 6.67E-81 2085060000 1961820 1381600 852600 2695010 1409320 1336770 2240430 1678130 1110810 3183090 TRUE FALSE FALSE 2398220.091 1543166.102 1168012.22 2842231.572 1269003.152 1406761.21 1761743.828 1266565.986 1333739.378 2389604.243 1.003605554 0.645783127 0.48878898 1.189415185 0.531051598 0.588700499 0.737253389 0.530031694 0.558142371 1 21.18834027 -4.257150935 23.99153052 0.683523179 1.003605783 0.150609021 0.216756977 460.9331854 2578494.566 0.052391362 0.393398 5.53E-05 4.257150935 0.320082604 DYDEEEQGYDS(ph)EK ddPTM_HeLa_A486_30min_R1 4 DYDEEEQGYDSEK 13 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK ;;; 378.33 1.55E-109 2581890000 1710820 1459030 503025 850920 748990 1501430 1921130 1522760 1024710 3250310 TRUE FALSE FALSE 1590900.353 1343411.149 697809.7515 1980984.763 655044.6901 1316198.832 1440442.954 1176060.79 1113532.688 2436411.22 0.652968735 0.55138933 0.286408856 0.813074881 0.268856376 0.540220313 0.591215039 0.482702091 0.457038073 1 21.21632622 -10.52526245 3.226919587 1.014285256 0.513690822 0.475052673 0.152622076 91754993.97 110631936.1 11466167.15 0.035158509 2.98E-11 10.52526245 -0.500594434 DYDEEEQGYDS(ph)EKEK ddPTM_HeLa_A486_30min_R1 3 DYDEEEQGYDSEKEK 15 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EKEK;DYDEEEQGYDS(1)EKEK;DYDEEEQGYDS(1)EKEK ;; 161.8 3.35E-12 11237500000 1802730 1459280 504725 1382540 958860 1989420 2845040 2244860 1147850 4316020 TRUE FALSE FALSE 1676367.936 1343641.338 700168.037 3218622.99 838590.8378 1743985.587 2133180.9 1733754.383 1247346.562 3235260.499 0.518155474 0.415311638 0.216417824 0.994857444 0.259203498 0.539055692 0.659353675 0.535893287 0.385547489 1 21.62545045 -11.19451375 2.398286218 2.447383244 0.505631796 0.339942972 0.207872922 14884948.93 3195210.226 116943868.4 0.050633929 6.39E-12 11.19451375 -1.941751448 DYDEEEQGYDS(ph)EKEKK ddPTM_HeLa_A485_30min_R1 7 DYDEEEQGYDSEKEKK 16 2 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK ;;;;;; 227.6 3.05E-34 10985090000 3399650 1602649 808025 9780690 2310240 2412370 6194660 4403010 1350179 11799080 TRUE FALSE FALSE 4155890.414 1790064.859 1106947.072 10314984.33 2080224.394 2538677.963 4871120.285 3323164.894 1621147.541 8857786.502 0.469179339 0.202089411 0.124968814 1.16451038 0.234846978 0.286604104 0.549925231 0.375168773 0.183019487 1 23.07851479 -10.92676388 2.799958252 1.372187245 0.403207389 0.285202725 0.285400814 41482605.24 27262925.6 101198204.6 0.074228177 1.18E-11 10.92676388 -0.968979856 DYDEEEQGYDS(ph)EKEKK ddPTM_HeLa_A486_30min_R1 7 DYDEEEQGYDSEKEKK 16 2 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK;DYDEEEQGYDS(1)EKEKK ;;;;;; 220.86 6.30E-34 17794830000 7060570 4659270 927392 8598280 2596612 8490690 14404280 10662740 3340878 23797610 TRUE FALSE FALSE 6565660.504 4290052.476 1286503.019 20017230.37 2270920.711 7443194.995 10800176.79 8235066.868 3630467.995 17838533.56 0.368060552 0.240493562 0.072119326 1.1221343 0.127304226 0.417253748 0.605440843 0.461644834 0.203518298 1 24.08849369 -11.32018995 2.198334364 3.989653232 0.408832347 0.282814206 0.28550002 25097996.52 2940051.265 373346097.9 0.07133168 4.78E-12 11.32018995 -3.580820885 DYDEEEQGYDS(ph)EKEKKEEK ddPTM_HeLa_A485_30min_R1 7 DYDEEEQGYDSEKEKKEEK 19 3 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EKEKKEEK;DYDEEEQGY(0.001)DS(0.999)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK ;;;;;; 229.1 3.85E-35 12821150000 2546543 1127232 909856 13942880 4535420 2751708 10603410 8389590 1721864 21992150 TRUE FALSE FALSE 3113012.705 1259051.977 1246449.597 14704544.23 4083857.66 2895783.176 8337904.832 6332029.898 2067426.311 16509911.74 0.18855417 0.07626037 0.075497048 0.890649475 0.247357934 0.175396648 0.505024192 0.383528997 0.125223341 1 23.97682907 -11.15898693 2.44573519 2.702586971 0.304593857 0.442721291 0.236662771 31855250.62 7102447.656 301025031.8 0.061912953 6.93E-12 11.15898693 -2.397993114 DYDEEEQGYDS(ph)EKEKKEEK ddPTM_HeLa_A486_30min_R1 2 DYDEEEQGYDSEKEKKEEK 19 3 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGY(0.002)DS(0.998)EKEKKEEK;DYDEEEQGYDS(1)EKEKKEEK ; 123.43 3.61E-05 6189900000 769960 617480 184288 4663900 828140 1908730 5140200 4452500 525730 4349800 TRUE FALSE FALSE 715989.7801 568548.636 255649.249 10857794.9 724266.9591 1673250.299 3854067.593 3438762.947 571300.6997 3260581.768 0.21958958 0.174370305 0.078406023 3.33001767 0.222128139 0.513175384 1.182018384 1.054647052 0.175214345 1 21.63669797 DYDRDKDDKISWEEYK ddPTM_HeLa_A486_30min_R1 1 DYDRDKDDKISWEEYK 16 3 Q15293-2;Q15293 Q15293-2 RCN1 Reticulocalbin-1 0 0 89.261 0.0007811 213320000 62267 53050 34094 50997 55695 75824 105650 101410 37902 121080 FALSE FALSE TRUE 57902.40485 48846.1248 47296.10987 118723.5932 48709.21376 66469.6058 79215.25255 78321.15676 41187.37588 90760.7799 0.637967247 0.53818538 0.521107354 1.308093577 0.536676897 0.732360452 0.872791669 0.862940544 0.453801476 1 16.46978139 -13.99990895 0.033682741 2.09262203 3.49E-27 0.088102501 0.242528932 3280.202168 8.27721357 423.2288949 153.3730092 1.00E-14 13.99990895 -2.09262203 DYDS(ph)PER ddPTM_HeLa_A485_30min_R1 2 DYDSPER 7 0 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 DYDS(1)PER;DYDS(1)PER ; 186.41 0.00050576 1492730000 1306690 1454790 1033320 1367470 959900 1072880 1174790 875460 1027960 1443020 TRUE FALSE FALSE 1597358.682 1624915.036 1415588.068 1442171.423 864328.9856 1129054.338 923786.5193 660752.0623 1234262.143 1083301.671 1.474528034 1.499965411 1.30673487 1.331274069 0.79786546 1.042234465 0.852750941 0.609942807 1.139352201 1 20.04700362 -5.679391971 4.816016255 0.891731322 1.415903425 0.737748486 0.145173482 0.104785447 4.319052419 0.043668542 0.056320316 2.09E-06 5.679391971 0.524172103 DYDS(ph)PER ddPTM_HeLa_A486_30min_R1 3 DYDSPER 7 0 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 DYDS(1)PER;DYDS(1)PER;DYDS(1)PER ;; 174.02 0.00044419 1848850000 2589020 2597680 1331720 592940 1344840 2039410 1907420 1651310 1904530 2878560 TRUE FALSE FALSE 2407543.068 2391830.376 1847397.649 1380394.286 1176157.627 1787808.329 1430163.341 1275342.761 2069616.194 2157749.84 1.115765611 1.108483631 0.856168595 0.63973787 0.545085258 0.828552178 0.662803127 0.591052187 0.959154836 1 21.04109618 -4.87924743 3.206102628 0.721858944 1.119221342 0.497759963 0.143131537 0.175411702 3.534297151 0.037425434 0.09225481 1.32E-05 4.87924743 0.397362398 DYDS(ph)PERER ddPTM_HeLa_A485_30min_R1 4 DYDSPERER 9 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 DYDS(1)PERER;DYDS(1)PERER;DYDS(1)PERER;DYDS(1)PERER ;;; 122.39 0.00016879 2783660000 818800 958000 877810 1180740 1253430 976200 1254310 1207710 961360 1387100 TRUE FALSE FALSE 1000939.235 1070029.767 1202548.448 1245240.836 1128634.108 1027312.323 986316.4217 911517.2289 1154296.134 1041321.498 0.961220178 1.027569073 1.154829177 1.195827455 1.08384789 0.986546734 0.947177624 0.875346597 1.108491601 1 19.98998412 -6.276050798 4.719908056 0.972269686 1.092173282 0.275546125 0.080871052 0.250849645 15.61819439 0.030134614 0.027735408 5.30E-07 6.276050798 0.119903596 DYDS(ph)PERER ddPTM_HeLa_A486_30min_R1 4 DYDSPERER 9 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 DYDS(1)PERER;DYDS(1)PERER;DYDS(1)PERER;DYDS(1)PERER ;;; 142.08 0.00013606 1663580000 2069030 2330400 1668220 999880 2357800 2313620 2529980 2537400 1764240 2655060 TRUE FALSE FALSE 1924001.681 2145730.617 2314199.46 2327771.171 2062062.738 2028189.088 1896952.245 1959689.411 1917165.744 1990215.694 0.966730233 1.078139733 1.162788268 1.169607484 1.036100129 1.019080039 0.953139024 0.984661822 0.96329546 1 20.92449336 -6.207366678 2.415121949 0.977003668 1.097175375 0.465114419 0.055119454 0.274808882 3.15097349 0.022200308 0.021266244 6.20E-07 6.207366678 0.120171707 DYEEVGADS(ph)ADGEDEGEEY ddPTM_HeLa_A485_30min_R1 1 DYEEVGADSADGEDEGEEY 19 0 F5H5D3;Q9BQE3 F5H5D3 TUBA1C Tubulin alpha-1C chain 1 0 DYEEVGADS(1)ADGEDEGEEY 336.23 4.45E-102 288570000 381380 480820 372930 434590 463720 434440 527970 559650 409290 551030 TRUE FALSE FALSE 466216.6653 537047.7164 510892.3259 458330.5513 417550.4086 457186.6066 415164.8964 422394.96 491430.7488 413668.362 1.127030027 1.298256685 1.235028764 1.107966171 1.009384442 1.105200805 1.003617715 1.021095638 1.187982437 1 18.6581151 -5.386569472 3.672295655 1.055717969 1.227889392 0.548740826 0.06681004 0.170299356 4.10925187 0.018841243 0.029020377 4.11E-06 5.386569472 0.172171423 DYEEVGADS(ph)ADGEDEGEEY ddPTM_HeLa_A486_30min_R1 2 DYEEVGADSADGEDEGEEY 19 0 F5H5D3;Q9BQE3 F5H5D3 TUBA1C Tubulin alpha-1C chain 1 0 DYEEVGADS(1)ADGEDEGEEY;DYEEVGADS(1)ADGEDEGEEY ; 445.09 1.13E-203 452340000 570770 586510 421180 206444 529360 554080 615580 597290 472240 674320 TRUE FALSE FALSE 530761.9705 540032.8116 584272.1756 480612.0651 462962.7327 485723.2431 461555.3731 461300.1057 513174.1434 505465.8829 1.050045094 1.068386275 1.155908233 0.950829881 0.91591292 0.960941697 0.913128638 0.912623624 1.015249814 1 18.94725419 -5.281740247 23.47436017 0.946194413 1.089140491 0.696881692 0.041781685 183.5136158 212200.6484 0.011565068 0.017183433 5.23E-06 5.281740247 0.142946078 DYEIESQNPLAS(ph)PTNTLLGSAK ddPTM_HeLa_A485_30min_R1 3 DYEIESQNPLASPTNTLLGSAK 22 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 DYEIESQNPLAS(0.997)PT(0.003)NTLLGSAK;DYEIESQNPLAS(0.68)PT(0.127)NT(0.193)LLGSAK;DYEIESQNPLAS(0.984)PT(0.008)NT(0.008)LLGSAK ;; 214.02 6.06E-28 539466000 120586 117183 95280 151900 163469 142867 184903 193612 121355 208918 TRUE FALSE FALSE 147409.9397 130886.5325 130528.0369 160197.9124 147193.4524 150347.2952 145396.9635 146128.3534 145709.8354 156838.5875 0.939883112 0.834530166 0.832244405 1.021418995 0.938502793 0.958611638 0.927048413 0.931711741 0.929043278 1 17.25892103 -5.246707793 24.99858932 0.953120217 0.86545032 0.501009254 0.040525248 676.7098494 1148332.902 0.010888224 0.018760704 5.67E-06 5.246707793 -0.087669897 DYEIESQNPLAS(ph)PTNTLLGSAK ddPTM_HeLa_A486_30min_R1 3 DYEIESQNPLASPTNTLLGSAK 22 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 DYEIESQNPLAS(0.995)PT(0.005)NTLLGSAK;DYEIESQNPLAS(0.71)PT(0.145)NT(0.145)LLGSAK;DYEIESQNPLAS(0.718)PT(0.126)NT(0.157)LLGSAK ;; 308.8 2.62E-102 730460000 349571 357731 188001 143977.1 319533 377078 445090 444153 289036 452850 TRUE FALSE FALSE 325067.8781 329383.0927 260800.022 335185.965 279454.1916 330557.9502 333723.7743 343029.0577 314089.8732 339453.4124 0.957621477 0.970333721 0.768294006 0.987428474 0.823247554 0.973794748 0.983120988 1.010533538 0.925281237 1 18.37285406 -6.479929884 24.24627167 0.980304073 0.902193675 0.255333247 0.065938674 467.6845062 264025.8803 0.022458218 0.019804547 3.31E-07 6.479929884 -0.078110398 DYEPQTICEHLQYLFALLQNSNRR ddPTM_HeLa_A485_30min_R1 2 DYEPQTICEHLQYLFALLQNSNRR 24 1 E9PJ87;E9PRY5;Q86UV5-4;Q86UV5-7;Q86UV5-3;Q86UV5-2;Q86UV5;Q86UV5-8 E9PJ87 USP48 Ubiquitin carboxyl-terminal hydrolase 48 0 0 ; ; 234.23 1.71E-50 33379500 6639.01 10317.6 9186.8 5859.65 9032.4 7827.26 9541.72 9802.2 6273.3 8024.18 FALSE FALSE TRUE 8115.83487 11524.15357 12585.37961 6179.747842 8133.102541 8237.08323 7503.053573 7398.195081 7532.293768 6023.8996 1.347272599 1.913071986 2.089241264 1.025871653 1.350139126 1.367400484 1.245547581 1.228140502 1.250401612 1 12.55648201 -5.266778603 24.99888834 1.233072103 1.796182957 0.614555167 0.207497131 287.5370083 1346283.403 0.057801787 0.088642115 5.41E-06 5.266778603 0.563110854 DYEPQTICEHLQYLFALLQNSNRR ddPTM_HeLa_A486_30min_R1 1 DYEPQTICEHLQYLFALLQNSNRR 24 1 E9PJ87;E9PRY5;Q86UV5-4;Q86UV5-7;Q86UV5-3;Q86UV5-2;Q86UV5;Q86UV5-8 E9PJ87 USP48 Ubiquitin carboxyl-terminal hydrolase 48 0 0 191.4 3.04E-28 15608000 4914.2 4756.1 3185.3 1499.7 4085.5 3408.7 4145.4 4133.4 3030.1 5176 FALSE FALSE TRUE 4569.739957 4379.209315 4418.733465 3491.377391 3573.058494 2988.169251 3108.177074 3192.315051 3292.751508 3879.89591 1.177799627 1.128692474 1.138879384 0.899863675 0.92091607 0.770167376 0.801098057 0.822783684 0.848670063 1 11.92180223 -5.333024059 1.877603125 0.841144842 1.163275191 0.804491547 0.063510741 0.13527658 0.931923858 0.019280026 0.036555231 4.64E-06 5.333024059 0.322130348 DYFEEYGK ddPTM_HeLa_A486_30min_R1 1 DYFEEYGK 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 131.06 0.00073369 0 106770 112630 63434 64720 162500 117020 126710 128340 95011 142860 FALSE FALSE TRUE 99285.97436 103704.7886 87997.34362 150671.4308 142117.7347 102583.2622 95005.8178 99119.78364 103246.63 107086.9261 0.927153089 0.968416896 0.821737506 1.407001174 1.32712498 0.957943849 0.887184096 0.925601165 0.964138515 1 16.70842283 -6.491139217 24.63355712 0.935821357 1.091826276 0.155825035 0.166549263 1130.363477 877294.6877 0.065257729 0.057492671 3.23E-07 6.491139217 0.156004919 DYFEEYGKIDTIEIITDR ddPTM_HeLa_A485_30min_R1 5 DYFEEYGKIDTIEIITDR 18 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;; ;;;; 205.31 3.06E-25 506054600 356697.9 362621.9 273652.6 432255.2 444602.5 418508.1 668432 738354.8 338612.6 645436.5 FALSE FALSE TRUE 436044.1173 405027.3768 374888.0844 455868.207 400336.314 440420.537 525616.0426 557272.1276 406569.0429 484541.0589 0.899911595 0.83589898 0.773697249 0.940824722 0.826217524 0.908943688 1.084770904 1.150103004 0.839080683 1 18.8862594 -6.598365298 4.978817334 1.029908004 0.855427757 0.448838697 0.084947008 0.179033931 8.125089876 0.03256864 0.025042304 2.52E-07 6.598365298 -0.174480248 DYFEEYGKIDTIEIITDR ddPTM_HeLa_A486_30min_R1 3 DYFEEYGKIDTIEIITDR 18 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;; ;; 193.9 2.48E-18 112222900 94586.6 77003.2 47811.4 72913.8 95648.3 85334.3 126491 105684.5 67716.3 125841.3 FALSE FALSE TRUE 87956.56779 70901.18599 66325.25451 169747.0113 83651.19833 74806.62168 94841.61391 81622.44643 73586.00341 94329.81939 0.932436512 0.751630677 0.703120762 1.799505314 0.886794853 0.793032597 1.005425586 0.865287848 0.780092699 1 16.52542628 DYFEQYGK ddPTM_HeLa_A485_30min_R1 1 DYFEQYGK 8 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 126.41 0.0036696 39429000 24713 25181 25970 28987 40091 26092 34220 32925 28884 37323 FALSE FALSE TRUE 30210.32159 28125.6989 35577.3837 30570.48641 36099.39927 27458.13677 26908.61745 24850.09213 34680.75386 28019.06298 1.078205992 1.003805835 1.26975637 1.09106027 1.288387099 0.979980551 0.960368213 0.886899471 1.237755663 1 14.77412109 -6.310201386 24.99877637 1.002642405 1.142126264 0.245508527 0.115969869 549.0593871 281484.0132 0.040321867 0.03556061 4.90E-07 6.310201386 0.139483858 DYFEQYGK ddPTM_HeLa_A486_30min_R1 1 DYFEQYGK 8 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 126.41 0.026242 106330000 309460 281950 179660 126410 384880 295410 333580 326400 237380 346330 FALSE FALSE TRUE 287768.4521 259607.2552 249229.1635 294288.8684 336604.7615 258965.3177 250114.7558 252085.8453 257956.2895 259606.7138 1.108478467 1.000002085 0.960025879 1.133594983 1.296594979 0.997529355 0.963437163 0.971029761 0.993642598 1 17.98596817 -6.49344331 24.97023575 0.979737417 1.094191822 0.317770141 0.083988934 963.8307062 817624.1975 0.03276585 0.028848995 3.21E-07 6.49344331 0.114454405 DYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA ddPTM_HeLa_A485_30min_R1 2 DYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 36 1 P52209-2;P52209 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 ; ; 194.26 5.43E-49 278900000 68805 129198 123680 33398 154420 107298 124598 166536 87965 82074 FALSE FALSE TRUE 84110.43488 144306.5822 169434.3788 35222.44817 139045.4026 112915.9574 97976.61943 125692.7849 105618.7686 61614.46226 1.365108642 2.342089453 2.749912481 0.571658777 2.25670074 1.832620999 1.590156204 2.039988345 1.714187948 1 15.9109814 -11.17094444 0.34724092 1.91E-10 1.891074552 0.161938204 0.566096137 82.03792213 3.98769019 65.16307133 0.450410521 6.75E-12 11.17094444 1.891074551 DYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA ddPTM_HeLa_A486_30min_R1 1 DYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 36 1 P52209-2;P52209 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 78.588 5.25E-05 101290000 39996 54216 84385 112.72 88503 35290 37918 40160 61800 14430 FALSE FALSE TRUE 37192.48694 49919.72671 117061.1319 262.4178566 77402.12848 30936.2786 28430.51534 31016.44469 67156.87376 10816.63408 3.438452912 4.615088793 10.82232523 0.024260584 7.155842375 2.860065191 2.628406873 2.867476561 6.208666512 1 13.40096401 -5.862942166 1.202803236 3.306091372 5.570078921 0.091912126 2.875951189 1.185584308 3.625182548 1.208428995 1.585751409 1.37E-06 5.862942166 2.263987548 DYGHS(ph)SSRDDYPSR ddPTM_HeLa_A485_30min_R1 1 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DYGHS(0.887)S(0.107)S(0.006)RDDYPSR 201.9 3.72E-22 996190000 202510 447690 463400 106220 626950 341560 471850 462170 444810 290350 TRUE FALSE FALSE 247557.6508 500043.4511 634830.9437 112022.5296 564528.6566 359443.5534 371035.3928 348822.0828 534079.287 217971.0885 1.135736177 2.294081543 2.912454803 0.513932973 2.589924474 1.649042338 1.702222966 1.600313534 2.450229939 1 17.73377726 -10.28965809 4.453687709 0.999406773 1.876640849 0.128270468 0.681867818 0.003871025 0.000617408 0.62764443 0.152127701 5.13E-11 10.28965809 0.877234076 DYGHS(ph)SSRDDYPSR ddPTM_HeLa_A486_30min_R1 3 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DYGHS(0.883)S(0.099)S(0.017)RDDYPSR;DYGHS(0.976)S(0.022)S(0.003)RDDYPSR;DYGHS(0.75)S(0.142)S(0.108)RDDYPSR ;; 179.87 2.07E-11 466340000 508348 603424 603268 25274.9 819201 407596 534093 518410 592137 193915 TRUE FALSE FALSE 472715.4303 555606.4846 836869.5257 58841.24452 716449.1718 357310.9497 400457.2823 400379.3598 643463.9119 145357.4218 3.252090085 3.822346858 5.757322297 0.404803854 4.928879192 2.45815415 2.754983387 2.754447312 4.426770259 1 17.14924521 -10.84536012 2.594513309 0.05938065 3.369421453 0.20630581 1.408757136 17375385.22 9473965.634 100778438 0.340925624 1.43E-11 10.84536012 3.310040803 DYGHSS(ph)SRDDYPSR ddPTM_HeLa_A486_30min_R1 1 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DYGHS(0.299)S(0.638)S(0.062)RDDYPSR 200.67 4.06E-22 771890000 262920 289540 328040 12074 399780 205020 278870 300220 284800 98547 TRUE FALSE FALSE 244490.6657 266595.7959 455065.8732 28108.88219 349635.8646 179726.7169 209093.7764 231866.4598 309486.6933 73870.18977 3.309733825 3.60897673 6.160345258 0.38051726 4.733111769 2.43300738 2.830556914 3.13883666 4.18960198 1 16.17270466 -5.246384721 24.98281046 2.843850195 4.284614007 0.223247117 1.415252094 1380.079951 2290203.26 0.366009933 0.630844046 5.67E-06 5.246384721 1.440763811 DYGHSSSRDDYPSR ddPTM_HeLa_A485_30min_R1 2 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 146.27 2.76E-07 249680000 61583 233791 253850 31504.3 258864 144546 150824 222127 159933 53308 FALSE FALSE TRUE 75281.92589 261130.8237 347759.6786 33225.30014 233090.5912 152114.205 118599.2203 167650.005 192030.0861 40019.29666 1.881140654 6.525122766 8.689799861 0.830231986 5.824454968 3.801021451 2.963550841 4.189229171 4.798437307 1 15.28840819 -5.263899925 24.99997876 3.583293171 5.781331116 0.196906147 2.139501927 371.8488641 3778121.029 0.584258819 0.91401297 5.45E-06 5.263899925 2.198037945 DYGHSSSRDDYPSR ddPTM_HeLa_A486_30min_R1 2 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 129.38 7.41E-05 127568000 63355 73171 102762 3581.2 137520 27764 46048 57416 69180 19770.3 FALSE FALSE TRUE 58914.14167 67372.66348 142554.1985 8337.214584 120270.9593 24338.75996 34526.30335 44343.63018 75176.5781 14819.6882 3.975396843 4.546159311 9.619244114 0.562576923 8.115620091 1.642326049 2.329759094 2.99221074 5.072750324 1 13.85522747 -6.290416828 24.96790579 2.714569254 5.288054928 0.235933431 2.474542211 1129.32437 973058.579 0.837318814 0.738569097 5.12E-07 6.290416828 2.573485675 DYGNS(ph)PLHR ddPTM_HeLa_A485_30min_R1 2 DYGNSPLHR 9 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A087WUW5;K7ELW5;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 1 0 DYGNS(1)PLHR;DYGNS(1)PLHR ; 95.417 0.0019581 459400000 341310 377720 352900 367810 503700 377600 410050 399410 318420 449450 TRUE FALSE FALSE 417233.232 421891.0683 483452.3954 387902.529 453549.8594 397370.5521 322439.4677 301454.0712 382323.9733 337410.3865 1.23657495 1.250379612 1.43283199 1.149646082 1.344208351 1.177706935 0.955629941 0.893434474 1.133112638 1 18.36414486 -6.606106943 3.855707605 0.987519715 1.280951695 0.697160012 0.089058306 0.122621933 3.544522734 0.034684121 0.02642722 2.48E-07 6.606106943 0.293431981 DYGNS(ph)PLHR ddPTM_HeLa_A486_30min_R1 3 DYGNSPLHR 9 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A087WUW5;K7ELW5;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 1 0 DY(0.001)GNS(0.999)PLHR;DYGNS(1)PLHR;DYGNS(1)PLHR ;; 130.77 0.00017376 767270000 665600 631590 538700 224633 760200 653690 651370 703830 552500 631396 TRUE FALSE FALSE 618944.8772 581540.5082 747299.0669 522956.9763 664848.6274 573044.374 488390.3365 543583.2735 600391.1449 473290.3319 1.307748829 1.228718334 1.57894429 1.104939064 1.404737394 1.210767124 1.031904317 1.148519707 1.268547241 1 18.85236593 -6.507589373 7.193199744 1.123802753 1.320547445 0.365273065 0.132020193 0.184401821 50.6460079 0.046655372 0.038957146 3.11E-07 6.507589373 0.196744692 DYGNSPLHR ddPTM_HeLa_A485_30min_R1 2 DYGNSPLHR 9 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A087WUW5;K7ELW5;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 ; ; 101.38 0.0059263 444110000 162179 299680 281480 113212 350650 247390 307740 320320 257130 219820 FALSE FALSE TRUE 198255.159 334724.9691 385611.1654 119396.4849 315738.0548 260342.9579 241988.835 241761.0178 308733.6325 165022.9195 1.20137954 2.028354426 2.336712782 0.723514559 1.9132982 1.577616968 1.466395309 1.46501479 1.870853051 1 17.33230688 -11.10670315 1.911192046 0.000117843 1.6253038 0.157040185 0.431038597 3816915.843 907403.9639 16573330.13 0.110723419 7.82E-12 11.10670315 1.625185957 DYGNSPLHR ddPTM_HeLa_A486_30min_R1 1 DYGNSPLHR 9 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A087WUW5;K7ELW5;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 120.27 0.0015621 188460000 94466 99548 104250 12223 147350 82019 99239 104220 101500 50112 FALSE FALSE TRUE 87844.42122 91659.45393 144618.3919 28455.76172 128867.989 71900.32969 74408.35256 80491.38111 110298.1017 37563.62903 2.338549909 2.440111787 3.849957942 0.757534947 3.430658655 1.914094339 1.98086166 2.14280098 2.936300474 1 15.19704883 -10.94127771 2.532111145 8.51E-05 2.40848919 0.215032438 0.8142893 20071778.09 11392049.38 118563078.1 0.195571094 1.14E-11 10.94127771 2.408404131 DYHFKVDNDENEHQLSLR ddPTM_HeLa_A485_30min_R1 1 DYHFKVDNDENEHQLSLR 18 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 176.46 5.81E-13 325390000 184480 189530 138960 190320 194830 199190 285720 295620 157280 284020 FALSE FALSE TRUE 225516.9396 211693.8848 190367.0866 200716.6997 175432.0411 209619.2804 224673.5879 223118.7315 188844.6533 213219.041 1.0576773 0.992846998 0.892824045 0.941363861 0.822778492 0.983117077 1.05372197 1.046429674 0.885683813 1 17.70197675 -6.508409237 24.87765555 1.002912515 0.93777013 0.116984375 0.07133984 1276.192562 2194184.875 0.026780027 0.022757225 3.10E-07 6.508409237 -0.065142385 DYHFKVDNDENEHQLSLR ddPTM_HeLa_A486_30min_R1 1 DYHFKVDNDENEHQLSLR 18 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 116.98 5.18E-05 190890000 178710 155000 88785 50646 156840 145730 183800 145280 127030 200680 FALSE FALSE TRUE 166183.3519 142717.2355 123164.9297 117906.4475 137167.6647 127751.3143 137811.296 112202.9154 138041.0627 150428.4218 1.104733732 0.948738502 0.818761031 0.783804324 0.911846731 0.849249848 0.916125386 0.745889069 0.917652801 1 17.19871765 -4.386739787 2.838677994 0.858890413 1.118445527 0.505023241 0.070855582 0.238977626 3.046341765 0.017289059 0.12260003 4.10E-05 4.386739787 0.259555113 DYHFVTS(ph)REQMEK ddPTM_HeLa_A486_30min_R1 1 DYHFVTSREQMEK 13 1 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UKA8;A0A590UJ29;C9JUA9;Q12959-8;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 DY(0.002)HFVT(0.127)S(0.871)REQMEK 50.563 0.0089934 0 86492 102220 56422 39396 110450 92321 105780 109790 74043 112130 TRUE FALSE FALSE 80429.35745 94119.71492 78270.10943 91715.87896 96596.33109 80931.37367 79312.72517 84793.2137 80461.10686 84051.91816 0.956900916 1.11978069 0.93121146 1.091181272 1.149246004 0.962873608 0.943615885 1.008819496 0.957278651 1 16.35899312 DYIVVGS(ph)DSGR ddPTM_HeLa_A485_30min_R1 1 DYIVVGSDSGR 11 0 Q15393;Q15393-2;J3QRB2;J3QL37 Q15393 SF3B3 Splicing factor 3B subunit 3 1 0 DYIVVGS(0.5)DS(0.5)GR 71.379 0.012712 117800000 76960 82091 90302 84547 110960 79112 103720 83051 87618 126170 TRUE FALSE FALSE 94079.48649 91690.82835 123708.4676 89165.58853 99912.4328 83254.18199 81559.37469 62682.61203 105202.1289 94718.14099 0.993257316 0.968038724 1.306069421 0.941378152 1.054839461 0.878967652 0.861074487 0.66178043 1.110686167 1 16.53135315 -6.260844674 7.9814982 0.87859742 1.056068462 0.208352842 0.142572921 0.164970951 113.9692796 0.047781873 0.044923719 5.48E-07 6.260844674 0.177471043 DYIVVGS(ph)DSGR ddPTM_HeLa_A486_30min_R1 1 DYIVVGSDSGR 11 0 Q15393;Q15393-2;J3QRB2;J3QL37 Q15393 SF3B3 Splicing factor 3B subunit 3 1 0 DYIVVGS(0.5)DS(0.5)GR 69.825 0.013711 96717000 106280 153110 116330 51596 150680 132480 151570 168370 130460 140340 TRUE FALSE FALSE 98830.32083 140977.006 161376.0914 120118.0955 131780.3094 116135.9646 113645.5829 130035.8265 141768.3778 105197.9505 0.939470021 1.340111716 1.53402315 1.141829236 1.252688942 1.103975543 1.080302252 1.236106082 1.347634408 1 16.68274707 DYLHYIR ddPTM_HeLa_A485_30min_R1 3 DYLHYIR 7 0 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 0 ;; ;; 131.3 0.0057769 556178000 284149 353546 368507 327550 459459 397127 483664 489376 345112 497357 FALSE FALSE TRUE 347356.9647 394890.1293 504833.0742 345443.2271 413713.6487 417919.9556 380325.2352 369355.7687 414372.8128 373375.0531 0.930316479 1.057623229 1.352080355 0.925190969 1.108037737 1.119303371 1.018614479 0.989235263 1.109803158 1 18.51026601 -6.775391829 24.60881001 1.028516148 1.087299488 0.046746869 0.115077597 681.8925725 1202684.207 0.048269839 0.032739627 1.68E-07 6.775391829 0.05878334 DYLHYIR ddPTM_HeLa_A486_30min_R1 1 DYLHYIR 7 0 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 0 121.52 0.0067001 82814000 67151 82185 64578 24074 92254 76118 75423 81762 68104 78716 FALSE FALSE TRUE 62444.06167 75672.36129 89584.33106 56045.48863 80682.64309 66727.33507 56551.36766 63146.57745 74007.30955 59005.00124 1.058284219 1.282473683 1.518249795 0.949843021 1.367386516 1.13087592 0.958416515 1.070190257 1.25425486 1 15.84854962 -6.511936151 24.08226236 1.072004817 1.238877046 0.187644754 0.162457467 560.4773527 1233495.485 0.058735985 0.04869041 3.08E-07 6.511936151 0.166872229 DYLLS(ph)ES(ph)EDEGDNDGER ddPTM_HeLa_A485_30min_R1 5 DYLLSESEDEGDNDGER 17 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER ;;;; 288.22 3.95E-60 1845860000 1475010 1716720 1433300 1549090 1843630 1573920 1998090 1919680 1491670 2120760 TRUE FALSE FALSE 1803120.886 1917475.471 1963537.315 1633712.864 1660071.724 1656328.017 1571181.749 1448875.47 1791034.487 1592093.562 1.132547062 1.20437361 1.233305229 1.026141242 1.042697341 1.040345905 0.986865211 0.910044174 1.124955549 1 20.60249369 -5.273534694 22.05049414 1.015545815 1.191505117 0.665033703 0.055694479 85.34336047 155586.4135 0.015628816 0.023451751 5.33E-06 5.273534694 0.175959303 DYLLS(ph)ES(ph)EDEGDNDGER ddPTM_HeLa_A486_30min_R1 3 DYLLSESEDEGDNDGER 17 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER;DYLLS(1)ES(1)EDEGDNDGER ;; 305.55 8.41E-69 1522720000 776810 880150 612630 306667 836110 790940 814210 790180 723920 908890 TRUE FALSE FALSE 722359.6305 810403.7085 849856.7428 713936.2741 731237.2874 693361.8645 610486.0462 610273.2635 786669.9685 681298.0281 1.060269663 1.189499566 1.247408194 1.047905975 1.073300167 1.017707135 0.896063134 0.895750814 1.154663504 1 19.37792651 -5.802614445 1.562474759 0.981581211 1.162795851 0.405639011 0.084589476 0.358577337 1.817903508 0.032100046 0.042079938 1.58E-06 5.802614445 0.181214639 DYLLS(ph)ES(ph)EDEGDNDGERK ddPTM_HeLa_A485_30min_R1 1 DYLLSESEDEGDNDGERK 18 1 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 DY(0.002)LLS(0.999)ES(0.999)EDEGDNDGERK 88.976 0.00036032 892470000 922810 662550 456450 1474800 965530 802480 1215900 961050 709190 1947400 TRUE FALSE FALSE 1128085.901 740029.4591 625309.8495 1555364.59 869398.443 844496.6119 956113.032 725350.9806 851517.9279 1461949.019 0.771631491 0.506193752 0.42772343 1.063897967 0.594684515 0.577651205 0.653998887 0.496153403 0.582453914 1 20.47946157 -10.28727224 3.12269484 1.002187406 0.627749083 0.297962186 0.170110303 32844900.28 44835955.41 685723.9848 0.044462294 5.16E-11 10.28727224 -0.374438324 DYLLS(ph)ES(ph)EDEGDNDGERK ddPTM_HeLa_A486_30min_R1 2 DYLLSESEDEGDNDGERK 18 1 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 DYLLS(1)ES(1)EDEGDNDGERK;DYLLS(1)ES(1)EDEGDNDGERK ; 149 1.63E-08 2094670000 2051610 2013010 1042780 1300640 2032920 2528500 3059400 2757600 1707060 3395400 TRUE FALSE FALSE 1907802.734 1853491.756 1446572.343 3027955.651 1777932.217 2216559.378 2293905.761 2129754.678 1855029.335 2545169.74 0.7495778 0.728238957 0.56835987 1.189687117 0.698551531 0.870888626 0.901278105 0.836782964 0.728843073 1 21.27933044 DYNASASTIS(ph)PPSSMEEDKFSR ddPTM_HeLa_A485_30min_R1 2 DYNASASTISPPSSMEEDKFSR 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DYNASAS(0.002)T(0.006)IS(0.991)PPSSMEEDKFSR;DYNASASTIS(0.999)PPSSMEEDKFSR ; 177.85 1.72E-15 1343140000 415260 272500 259261 665470 413600 303640 469530 308510 339090 832380 TRUE FALSE FALSE 507633.1544 304366.5046 355172.4327 701822.941 372420.5318 319538.1209 369211.0798 232847.4388 407142.2527 624882.9848 0.812365141 0.4870776 0.568382307 1.123126982 0.595984434 0.511356732 0.590848349 0.372625667 0.65154959 1 19.25322653 -8.051888027 22.44323069 1.000000003 0.627695448 0.238396603 0.195909499 7589.376571 3282643.642 0.196688253 0.050784689 8.87E-09 8.051888027 -0.372304555 DYNASASTIS(ph)PPSSMEEDKFSR ddPTM_HeLa_A486_30min_R1 3 DYNASASTISPPSSMEEDKFSR 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DYNASAS(0.003)T(0.003)IS(0.991)PPS(0.003)SMEEDKFSR;DYNASAS(0.011)T(0.017)IS(0.972)PPSSMEEDKFSR;DYNASAS(0.001)T(0.005)IS(0.748)PPS(0.12)S(0.12)MEEDKFS(0.006)R ;; 230.85 7.79E-37 1629190000 1014000 1196500 673900 429790 886980 1293720 1311150 1158460 1040280 1290480 TRUE FALSE FALSE 942923.8363 1101684.982 934852.1277 1000572.84 775726.6976 1134113.98 983086.4021 894703.947 1130452.308 967335.4084 0.974764108 1.138886236 0.966419837 1.03435978 0.801921124 1.172410283 1.016282867 0.924915949 1.168624965 1 19.88365668 -7.760586238 24.99999159 1.084312438 1.007338696 0.084567529 0.105501699 59.4593599 1742820.119 0.078627914 0.025801021 1.74E-08 7.760586238 -0.076973742 DYNPYNYSDSIS(ph)PFNK ddPTM_HeLa_A485_30min_R1 3 DYNPYNYSDSISPFNK 16 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;H7C5M8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 DYNPYNYSDSIS(1)PFNK;DYNPYNYSDSIS(1)PFNK;DYNPYNYSDSIS(1)PFNK ;; 307.02 1.23E-68 220078000 113657 94940 89128 151268 131588 98646 138748 133086 97621 188913 TRUE FALSE FALSE 138939.6075 106042.4071 122100.1561 159531.3878 118486.6367 103810.952 109103.3563 100446.4498 117212.6393 141820.4658 0.979686583 0.74772288 0.860948774 1.124882695 0.835469239 0.731988514 0.769306149 0.708264842 0.826486069 1 17.11370621 -5.990735203 24.99451504 0.786286946 0.919296642 0.184689275 0.116347735 315.4492875 851010.7936 0.036177092 0.040967386 1.02E-06 5.990735203 0.133009696 DYNPYNYSDSIS(ph)PFNK ddPTM_HeLa_A486_30min_R1 3 DYNPYNYSDSISPFNK 16 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;H7C5M8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 DYNPYNYSDS(0.045)IS(0.955)PFNK;DYNPYNY(0.001)S(0.002)DS(0.115)IS(0.882)PFNK;DYNPYNYSDSIS(1)PFNK ;; 333.59 1.05E-90 230105000 151722 160921 86094 61693.9 133544 160396 172817 170241 121020 200596 TRUE FALSE FALSE 141087.0713 148169.0339 119431.9025 143626.517 116793.6663 140607.9723 129576.3587 131480.8406 131510.111 150365.4559 0.93829444 0.985392775 0.794277527 0.955182932 0.776732033 0.93510821 0.861742865 0.874408552 0.874603214 1 17.19811364 -4.728114354 24.99967077 0.879262086 0.961843686 0.182356292 0.065311973 272.3156074 204281.2409 0.014968676 0.039598423 1.87E-05 4.728114354 0.0825816 DYNVTANSK ddPTM_HeLa_A485_30min_R1 2 DYNVTANSK 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 183.72 5.18E-08 112354000 82809 92745 85156 107941 141481 106607 143108 126223 103194 174658 FALSE FALSE TRUE 101229.5764 103590.721 116658.748 113837.5435 127394.6549 112188.7777 112531.8067 95266.61134 123904.0892 131118.9749 0.772043683 0.790051333 0.889716748 0.868200377 0.971595873 0.855625799 0.858241965 0.726566169 0.944974511 1 17.00051696 DYPVVSIEDPFDQDDWGAWQK ddPTM_HeLa_A485_30min_R1 1 DYPVVSIEDPFDQDDWGAWQK 21 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 129.46 4.34E-06 11775000 14506 13084 13394 21476 18510 12777 17443 19423 12626 22585 FALSE FALSE TRUE 17732.80965 14614.05998 18348.99797 22649.1795 16667.07941 13445.98396 13716.16055 14659.4788 15159.92239 16954.97515 1.045876476 0.861933436 1.082219102 1.335842684 0.983019985 0.793040618 0.808975562 0.864612226 0.894128258 1 14.04942105 -6.004185516 24.88420051 0.862884335 1.077539384 0.406599749 0.119077762 179.7457723 1068654.595 0.04006499 0.044374364 9.90E-07 6.004185516 0.214655049 DYQGPLKEHEVTIFVR ddPTM_HeLa_A485_30min_R1 2 DYQGPLKEHEVTIFVR 16 1 P53396;P53396-3;P53396-2;K7EIE7 P53396 ACLY ATP-citrate synthase 0 0 ; ; 140.28 2.58E-08 37534000 33390 41310 41773 39036 66039 49857 61284 74109 42223 63397 FALSE FALSE TRUE 40817.49031 46140.84515 57226.57102 41168.43784 59463.92528 52467.43543 48190.17276 55933.65155 50696.76881 47593.29464 0.857631114 0.969482056 1.202408269 0.865005 1.249418132 1.102412343 1.012541223 1.175242268 1.065208223 1 15.53847071 -4.539443795 6.519120177 1.08684259 0.883156634 0.31835588 0.105496667 0.142065233 25.14057269 0.025349814 0.073553123 2.89E-05 4.539443795 -0.203685956 DYQGPLKEHEVTIFVR ddPTM_HeLa_A486_30min_R1 1 DYQGPLKEHEVTIFVR 16 1 P53396;P53396-3;P53396-2;K7EIE7 P53396 ACLY ATP-citrate synthase 0 0 138.66 2.84E-08 9725200 21092 20993 18464 9831.4 30843 23576 29212 27784 18935 26860 FALSE FALSE TRUE 19613.55972 19329.43822 25613.75528 22887.99605 26974.38334 20667.43282 21902.84863 21458.18972 20576.30105 20134.08117 0.974147246 0.960035775 1.272159135 1.136778771 1.339737488 1.026489992 1.087849425 1.065764538 1.021963748 1 14.29735202 -7.233183458 1.306892243 1.013869567 1.128276999 0.124148604 0.112842438 1.082274569 3.291667758 0.100090748 0.039141418 5.85E-08 7.233183458 0.114407432 DYS(ph)KGIT(ph)VTK ddPTM_HeLa_A485_30min_R1 1 DYSKGITVTK 10 1 Q92540;Q92540-5 Q92540 SMG7 Protein SMG7 2 0 DY(0.457)S(0.585)KGIT(0.958)VTK 84.17 0.0030325 0 480120 879090 826350 197630 1158900 664260 800690 915780 859880 501120 TRUE FALSE FALSE 586921.0376 981891.9284 1132051.252 208426.0265 1043515.847 699039.6265 629616.0405 691183.5191 1032450.029 376200.0064 1.560130323 2.610026347 3.009173931 0.554029832 2.773832613 1.858159528 1.673620494 1.837276734 2.744417892 1 18.52114035 -10.5852629 3.044495406 0.942128419 2.064062427 0.172325955 0.702736677 149796778.3 176014578.3 70774338.93 0.166356798 2.60E-11 10.5852629 1.121934008 DYS(ph)YER ddPTM_HeLa_A485_30min_R1 4 DYSYER 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 DYS(1)YER;DYS(1)YER;DYS(1)YER;DYS(1)YER ;;; 133.33 0.005258 7727700000 4785720 5195080 4390240 5986710 6563680 5228760 7029420 7086240 4621870 7374930 TRUE FALSE FALSE 5850286.903 5802599.415 6014372.469 6313748.808 5910176.973 5502529.788 5527526.992 5348328.529 5549436.915 5536495.677 1.056676867 1.048063568 1.086313947 1.140387201 1.067494191 0.993865093 0.998380079 0.966013313 1.002337442 1 22.40054168 -6.230951749 4.23800574 0.989722776 1.082949243 0.757995718 0.024847084 0.112983517 4.773768471 0.009409224 0.009060641 5.88E-07 6.230951749 0.093226467 DYS(ph)YER ddPTM_HeLa_A486_30min_R1 3 DYSYER 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 DYS(1)YER;DYS(1)YER;DYS(1)YER ;; 137.84 0.0050618 5954890000 6226320 6563960 4474760 2922540 6872940 6356100 8257680 7682970 5634300 8154660 TRUE FALSE FALSE 5789887.121 6043807.904 6207506.91 6803820.817 6010871.778 5571949.006 6191521.123 5933725.449 6122685.661 6112680.058 0.947192895 0.988732904 1.015513138 1.113066732 0.983344739 0.911539448 1.012897954 0.970724035 1.00163686 1 22.54337363 -5.972739088 24.99867699 0.976049976 1.018385891 0.123823132 0.046579498 436.8080048 400557.9266 0.0151346 0.01716076 1.06E-06 5.972739088 0.042335916 DYSDHPS(ph)GGSYRDSYESYGNSR ddPTM_HeLa_A485_30min_R1 1 DYSDHPSGGSYRDSYESYGNSR 22 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DYSDHPS(0.438)GGS(0.112)YRDS(0.438)YES(0.01)YGNS(0.001)R 91.767 0.00070475 296120000 42063 125910 110600 20764 125610 55853 65207 89409 83364 47762 TRUE FALSE FALSE 51419.76923 140634.0792 151515.5424 21898.28474 113103.8274 58777.37671 51274.99176 67481.30256 100094.3901 35855.81239 1.434070679 3.922211486 4.225689849 0.610731797 3.154407049 1.639270534 1.430032911 1.882018508 2.791580596 1 15.12991939 -5.254176164 24.99938305 1.85957721 3.266812682 0.295537166 0.989201069 710.3226302 2444865.258 0.263120136 0.444059497 5.57E-06 5.254176164 1.407235472 DYSDHPSGGSYRDS(ph)YESYGNSR ddPTM_HeLa_A485_30min_R1 1 DYSDHPSGGSYRDSYESYGNSR 22 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DYSDHPS(0.001)GGS(0.004)YRDS(0.995)YESYGNSR 155.56 2.74E-10 203160000 54517 130630 143420 28173 140010 69051 76376 102870 113020 66854 TRUE FALSE FALSE 66644.11857 145906.0422 196477.0262 29712.01965 126070.1128 72666.40359 60057.64367 77640.97121 135702.0773 50188.52816 1.327875533 2.907159216 3.9147796 0.592008189 2.511930862 1.447868791 1.196640863 1.546986414 2.703846522 1 15.61507002 -5.266379788 24.99020653 1.612553035 2.735660207 0.280775792 0.838005453 536.738041 2714999.524 0.231456393 0.355927257 5.42E-06 5.266379788 1.123107172 DYSDHPSGGSYRDS(ph)YESYGNSR ddPTM_HeLa_A486_30min_R1 1 DYSDHPSGGSYRDSYESYGNSR 22 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DY(0.001)S(0.003)DHPS(0.082)GGS(0.082)Y(0.041)RDS(0.605)Y(0.051)ES(0.101)Y(0.013)GNS(0.019)R 43.436 0.02987 206770000 133030 152840 136960 51039 176210 130680 159690 164860 150440 117330 TRUE FALSE FALSE 123705.284 140728.4018 189994.5799 118821.3714 154108.0987 114558.0303 119733.873 127324.9769 163480.2603 87949.80431 1.406544164 1.600099089 2.160261542 1.351013482 1.752227875 1.302538774 1.361388737 1.447700514 1.858790495 1 16.42439275 -6.257455055 24.91554517 1.420021551 1.662322921 0.169562559 0.284460256 669.9690915 4189582.814 0.094662802 0.09138947 5.53E-07 6.257455055 0.24230137 DYSEADGLS(ph)ER ddPTM_HeLa_A485_30min_R1 1 DYSEADGLSER 11 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q4VXN2;Q4VXN1;Q4VXN7;Q4VXN0;Q4VXN5;Q4VXN6;Q9H4G0-4 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 DYSEADGLS(1)ER 142.12 1.12E-06 137300000 293290 317950 216560 247570 259780 237960 283390 263870 224450 333960 TRUE FALSE FALSE 358531.3487 355131.4867 296674.5558 261094.1222 233915.3911 250419.2176 222841.4114 199155.4688 269495.0562 250709.9181 1.43006448 1.416503541 1.183337931 1.0414192 0.933012116 0.998840491 0.888841627 0.794366136 1.074927782 1 17.93565954 -5.024589959 1.369198096 0.934508573 1.468329768 0.867799455 0.072768179 0.155746583 0.533204999 0.023119741 0.078296256 9.45E-06 5.024589959 0.533821195 DYSEADGLS(ph)ER ddPTM_HeLa_A486_30min_R1 1 DYSEADGLSER 11 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q4VXN2;Q4VXN1;Q4VXN7;Q4VXN0;Q4VXN5;Q4VXN6;Q9H4G0-4 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 DYSEADGLS(1)ER 144.42 9.88E-07 399650000 987460 1109800 710910 284890 807130 938790 932270 856780 958080 1079500 TRUE FALSE FALSE 918244.1532 1021855.406 986193.3908 663238.3175 705892.2292 822971.6347 699006.1855 661709.8974 1041127.146 809186.1736 1.134774893 1.262818668 1.218747209 0.819636246 0.872348357 1.017036204 0.863838519 0.81774741 1.286634868 1 19.62611214 -5.245201137 24.29153026 0.941778974 1.211184155 0.425725085 0.133318656 501.9044403 750819.6303 0.035431199 0.06110758 5.69E-06 5.245201137 0.26940518 DYTGCSTSESLS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 DYTGCSTSESLSPVK 15 0 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 0 DYTGCSTSES(0.002)LS(0.998)PVK;DYTGCSTSESLS(1)PVK ; 203.04 2.27E-25 113500000 205895 155888 132728 265719 176967 155861 194174 172481 168222 463370 TRUE FALSE FALSE 251695.6324 174117.7456 181829.6105 280234.5561 159347.5441 164021.641 152687.1386 130179.7643 201982.6124 347860.3867 0.723553592 0.500539159 0.522708585 0.805594908 0.458079017 0.471515721 0.43893224 0.374229919 0.580642752 1 18.40814887 -8.040394505 23.25573871 1.000000002 0.532428182 0.550990184 0.124606048 2683.299561 1544814.698 0.124976506 0.032268795 9.11E-09 8.040394505 -0.46757182 DYTGCSTSESLS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 DYTGCSTSESLSPVK 15 0 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 0 DYTGCSTSESLS(1)PVK 142.32 9.79E-08 436060000 132340 160080 83491 56335 156000 189160 178120 161420 157170 269290 TRUE FALSE FALSE 123063.6494 147394.6778 115820.9512 131150.727 136433.0254 165823.3624 133552.492 124668.1898 170793.6221 201858.0312 0.609654462 0.730189812 0.573774303 0.649717657 0.67588604 0.821485088 0.661615945 0.617603318 0.846107639 1 17.62298146 -13.99999999 0.173193233 2.289168969 0.611153237 0.654166347 0.074159236 83.94865437 0.79699627 36.92804429 0.258768948 1.00E-14 13.99999999 -1.678015732 DYTGCSTSESLS(ph)PVKQAPR ddPTM_HeLa_A485_30min_R1 4 DYTGCSTSESLSPVKQAPR 19 1 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 0 DYTGCSTSES(0.001)LS(0.999)PVKQAPR;DYTGCSTSES(0.002)LS(0.998)PVKQAPR;DYTGCSTSES(0.004)LS(0.996)PVKQAPR;DYTGCSTSES(0.011)LS(0.989)PVKQAPR ;;; 133.98 1.26E-06 1383760000 268826 248937 126007 251694 208859 279363 402859 450407 172361 516970 TRUE FALSE FALSE 328625.4163 278048.0167 172622.2329 265443.4059 188064.2646 293990.0147 316784.8836 339943.977 206952.2717 388098.8931 0.846756902 0.716435995 0.444789295 0.683958163 0.484578204 0.757513149 0.816247841 0.875921017 0.53324623 1 18.56606479 -6.499525933 22.7872046 0.794709143 0.630841473 0.223491268 0.151770257 394.8311708 385269.3831 0.053059332 0.046412462 3.17E-07 6.499525933 -0.16386767 DYTGCSTSESLS(ph)PVKQAPR ddPTM_HeLa_A486_30min_R1 2 DYTGCSTSESLSPVKQAPR 19 1 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 0 DYTGCSTSES(0.193)LS(0.807)PVKQAPR;DYTGCSTSES(0.002)LS(0.998)PVKQAPR ; 107.92 3.13E-05 443060000 111109 94897 80072 48109 165729 131490 123508 151757 121276 196715 TRUE FALSE FALSE 103320.8329 87377.01611 111078.0228 112000.1833 144941.7235 115268.1007 92604.99207 117205.2439 131788.3013 147456.2836 0.700687894 0.592562175 0.753294604 0.759548393 0.98294708 0.781710334 0.628016588 0.794847402 0.893744899 1 17.16992778 -14 0.035256673 2.225166418 1.34E-11 0.421160363 0.098507013 1204.349715 3.177165955 168.8106163 58.36445695 1.00E-14 14 -2.225166418 EAAANTNRPS(ph)PGGHER ddPTM_HeLa_A486_30min_R1 2 EAAANTNRPSPGGHER 16 1 O60356;O60356-2 O60356 NUPR1 Nuclear protein 1 1 0 EAAANT(0.017)NRPS(0.983)PGGHER;EAAANT(0.002)NRPS(0.998)PGGHER ; 71.309 0.0040027 90694000 35682 34622 34101 13857.9 43470 38807 36697 36364 38162 35892 TRUE FALSE FALSE 33180.87606 31878.42663 47305.82046 32261.89154 38017.58726 34019.3869 27515.02246 28084.71102 41469.91289 26904.40958 1.23328765 1.184877391 1.758292458 1.199130256 1.413061571 1.264453947 1.022695643 1.043870185 1.541379779 1 14.71555503 -6.525707623 23.49470416 1.153918275 1.359288202 0.177028809 0.209090656 75.01173645 622962.8587 0.078655386 0.061351306 2.98E-07 6.525707623 0.205369928 EAAAQEAGADTPGKGEPPAPKS(ph)PPK ddPTM_HeLa_A485_30min_R1 3 EAAAQEAGADTPGKGEPPAPKSPPK 25 2 O95466-2;K7EK60;O95466;O95466-3;K7ERL1;K7EJE6 O95466-2 FMNL1 Formin-like protein 1 1 0 EAAAQEAGADTPGKGEPPAPKS(1)PPK;EAAAQEAGADTPGKGEPPAPKS(1)PPK;EAAAQEAGADTPGKGEPPAPKS(1)PPK ;; 153.86 8.87E-10 2410770000 1036490 581510 369918 2363050 904570 971460 1939610 1549950 658570 3321830 TRUE FALSE FALSE 1267053.625 649512.536 506766.0618 2492137.438 814507.8347 1022324.143 1525196.478 1169822.332 790738.9582 2493758.915 0.508089863 0.260455224 0.203213734 0.999349786 0.326618515 0.409953078 0.611605424 0.46910001 0.317087171 1 21.24989057 -10.2307165 4.165846064 1.000333714 0.458726888 0.36515024 0.215100258 53359713.69 32761335.05 153308.9457 0.051910263 5.88E-11 10.2307165 -0.541606826 EAAAQEAGADTPGKGEPPAPKS(ph)PPK ddPTM_HeLa_A486_30min_R1 2 EAAAQEAGADTPGKGEPPAPKSPPK 25 2 O95466-2;K7EK60;O95466;O95466-3;K7ERL1;K7EJE6 O95466-2 FMNL1 Formin-like protein 1 1 0 EAAAQEAGADTPGKGEPPAPKS(1)PPK;EAAAQEAGADTPGKGEPPAPKS(1)PPK ; 199.59 1.13E-28 2125440000 923910 747990 210362 941020 596740 1224420 1890420 1591870 609550 2624770 TRUE FALSE FALSE 859148.6801 688716.5483 291819.8001 2190742.117 521891.3048 1073363.509 1417416.921 1229435.951 662386.2848 1967510.508 0.436667899 0.350044661 0.14831931 1.113458916 0.265254647 0.545543978 0.72041136 0.624868811 0.336662133 1 20.90793991 -14 0.138041438 2.56152537 0.341788761 0.243443151 0.260251006 208.4693587 1.771242599 90.95137556 1.659895516 1.00E-14 14 -2.219736609 EAAAQEAGADTPGKGEPPAPKS(ph)PPKAR ddPTM_HeLa_A485_30min_R1 1 EAAAQEAGADTPGKGEPPAPKSPPKAR 27 3 O95466-2;K7EK60;O95466;O95466-3;K7ERL1;K7EJE6 O95466-2 FMNL1 Formin-like protein 1 1 0 EAAAQEAGADTPGKGEPPAPKS(1)PPKAR 183.65 3.34E-20 1246600000 188450 166540 90975 339640 338240 379140 787460 1088500 193320 628350 TRUE FALSE FALSE 230370.0524 186015.4043 124630.4383 358193.6732 304563.638 398991.1841 619212.738 821543.6683 232117.5508 471713.9089 0.488368157 0.394339452 0.264207682 0.759345159 0.645653292 0.845832986 1.312687047 1.741614255 0.49207273 1 18.84755262 -6.175557999 1.355755342 1.184963633 0.427878597 0.468178604 0.314540365 0.350273334 1.307483614 0.142295155 0.13800037 6.67E-07 6.175557999 -0.757085036 EAAAQEAGADTPGKGEPPAPKS(ph)PPKAR ddPTM_HeLa_A486_30min_R1 1 EAAAQEAGADTPGKGEPPAPKSPPKAR 27 3 O95466-2;K7EK60;O95466;O95466-3;K7ERL1;K7EJE6 O95466-2 FMNL1 Formin-like protein 1 1 0 EAAAQEAGADTPGKGEPPAPKS(1)PPKAR 177.1 9.37E-15 656050000 230970 140840 64173 249750 263680 266840 507850 496870 126150 552180 TRUE FALSE FALSE 214780.1957 129679.3255 89022.50421 581430.6217 230606.7957 233919.9938 380780.5585 383743.5476 137084.7836 413910.5339 0.51890488 0.313302791 0.215076682 1.404725355 0.557141645 0.565146269 0.919958608 0.927117133 0.331194237 1 18.65895944 EAADLDAVPMSLS(ph)YEELVR ddPTM_HeLa_A485_30min_R1 1 EAADLDAVPMSLSYEELVR 19 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;H0YC55 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 EAADLDAVPMS(0.024)LS(0.976)YEELVR 123.36 6.26E-06 34081000 58953 58826 64105 74235 81234 71092 82867 80366 67405 87502 TRUE FALSE FALSE 72066.89146 65705.18898 87820.10713 78290.27008 73146.05773 74814.26719 65161.78849 60656.11249 80932.56522 65689.36175 1.097086188 1.00024094 1.336899991 1.191825708 1.113514514 1.138909942 0.991968665 0.923378015 1.232049803 1 16.00337213 -6.704307278 7.478439664 1.030638406 1.149517331 0.195446249 0.108546932 0.374771664 41.34315082 0.042616801 0.03274878 1.98E-07 6.704307278 0.118878925 EAADLDAVPMSLS(ph)YEELVR ddPTM_HeLa_A486_30min_R1 3 EAADLDAVPMSLSYEELVR 19 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;H0YC55 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 EAADLDAVPMS(0.341)LS(0.659)YEELVR;EAADLDAVPMS(0.003)LS(0.997)YEELVR;EAADLDAVPMS(0.169)LS(0.825)Y(0.006)EELVR ;; 147.37 1.94E-08 88201000 202587 290503 260113 109377 319315 306856 329061 323806 281566 302472 TRUE FALSE FALSE 188386.6975 267482.4843 360835.7197 254635.1836 279263.5352 268999.2266 246726.4573 250082.4424 305972.3676 226731.0424 0.830881804 1.179734726 1.591470298 1.123071552 1.231695194 1.186424337 1.088190019 1.102991632 1.349494821 1 17.7906224 -6.535375291 22.61709692 1.142831058 1.209147857 0.01498936 0.191238528 387.8323658 701904.7034 0.074800339 0.058004749 2.91E-07 6.535375291 0.0663168 EAAENSLVAYK ddPTM_HeLa_A485_30min_R1 2 EAAENSLVAYK 11 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 0 ; ; 189.58 2.68E-09 54828000 29088.3 28296.2 26726.4 34886 42573 32421.3 44233 45753 31804.8 48297 FALSE FALSE TRUE 35558.89198 31605.19445 36613.60754 36791.73384 38334.28264 34118.82914 34782.2582 34532.00501 38187.73163 36257.44674 0.980733482 0.871688364 1.009823108 1.014735927 1.057280258 0.941015769 0.959313502 0.952411383 1.053238302 1 15.14598971 -4.784624514 24.99996088 0.996007568 0.926210874 0.295510397 0.044501537 258.995832 279268.5521 0.011821033 0.024631166 1.64E-05 4.784624514 -0.069796694 EAAEPLSEPKEDQEAAELLS(ph)EPEEESER ddPTM_HeLa_A485_30min_R1 2 EAAEPLSEPKEDQEAAELLSEPEEESER 28 1 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 EAAEPLSEPKEDQEAAELLS(1)EPEEESER;EAAEPLSEPKEDQEAAELLS(0.996)EPEEES(0.004)ER ; 183.65 1.27E-20 2303200000 614300 665720 552370 1015840 912080 711850 1091840 1052870 689990 1359370 TRUE FALSE FALSE 750948.9157 743570.163 756714.649 1071332.767 821270.1127 749121.3653 858559.4645 794651.9817 828464.664 1020504.076 0.73586077 0.728630272 0.741510658 1.049807435 0.804769066 0.734069939 0.841309196 0.77868575 0.811819064 1 19.96085051 -11.89822927 1.482968242 5.196283888 0.804651278 0.299578663 0.090360773 1768482.647 37779.00084 25012820.13 0.025739219 1.26E-12 11.89822927 -4.39163261 EAAEPLSEPKEDQEAAELLS(ph)EPEEESER ddPTM_HeLa_A486_30min_R1 2 EAAEPLSEPKEDQEAAELLSEPEEESER 28 1 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 EAAEPLSEPKEDQEAAELLS(1)EPEEESER;EAAEPLSEPKEDQEAAELLS(1)EPEEESER ; 316.13 4.69E-109 2218100000 984480 952570 611820 545010 1085100 1212630 1484070 1292920 798170 1467220 TRUE FALSE FALSE 915473.0359 877084.884 848733.0891 1268810.823 948996.6398 1063028.04 1112739.989 998550.3402 867356.0183 1099818.562 0.832385511 0.797481434 0.771702823 1.153654673 0.862866542 0.966548553 1.01174869 0.907922793 0.788635552 1 20.06883411 EAAFS(ph)PGQQDWSR ddPTM_HeLa_A485_30min_R1 3 EAAFSPGQQDWSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 EAAFS(1)PGQQDWSR;EAAFS(1)PGQQDWSR;EAAFS(0.969)PGQQDWS(0.031)R ;; 257.37 2.95E-41 882460000 497258 577013 622510 421770 742110 536333 597800 606813 490264 595820 TRUE FALSE FALSE 607871.3266 644489.651 852802.3538 444810.2271 668222.9227 564414.5666 470075.1464 457991.1603 588655.4878 447293.0393 1.359000193 1.440866713 1.906585346 0.994449249 1.493926496 1.261845182 1.050933292 1.023917477 1.316039903 1 18.77086078 -6.07950082 0.918889809 1.094570643 1.511533928 0.342585539 0.222032585 0.655554747 1.204074064 0.12388935 0.138118929 8.33E-07 6.07950082 0.416963286 EAAFS(ph)PGQQDWSR ddPTM_HeLa_A486_30min_R1 4 EAAFSPGQQDWSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 EAAFS(1)PGQQDWSR;EAAFS(1)PGQQDWSR;EAAFS(1)PGQQDWSR;EAAFS(1)PGQQDWSR ;;; 292.85 1.55E-57 1060520000 882750 1025170 921750 278941 1107610 787490 895140 931670 797760 765520 TRUE FALSE FALSE 820873.7835 943931.7956 1278676.285 649388.7449 968683.2257 690337.4904 671166.5042 719549.0792 866910.4791 573828.8093 1.43052034 1.644971079 2.228323613 1.13167679 1.688104902 1.203037351 1.169628456 1.253943803 1.51074757 1 19.13026088 -5.794941777 1.382711513 1.250508113 1.714357228 0.316982605 0.283980699 0.508824768 2.034397846 0.109595541 0.14859082 1.60E-06 5.794941777 0.463849115 EAAGPAPS(ph)PMR ddPTM_HeLa_A485_30min_R1 3 EAAGPAPSPMR 11 0 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 EAAGPAPS(1)PMR;EAAGPAPS(1)PMR;EAAGPAPS(1)PMR ;; 159.36 1.12E-07 2214360000 1030910 1575510 1302920 900380 1416420 1390120 1383410 1541350 1160180 1227950 TRUE FALSE FALSE 1260232.373 1759752.189 1784924.327 949565.4795 1275396.251 1462904.534 1087833.152 1163331.496 1393017.484 921844.6637 1.367076713 1.908946549 1.936252817 1.030071027 1.383526207 1.586931716 1.180061235 1.261960438 1.51111954 1 19.81416414 -1 0.083632812 0.693300552 3.453691069 0.285270161 0.261500686 227.8284066 1.385325352 6.548401258 72.42700816 0.1 1 2.760390516 EAAGPAPS(ph)PMR ddPTM_HeLa_A486_30min_R1 4 EAAGPAPSPMR 11 0 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 EAAGPAPS(1)PMR;EAAGPAPS(1)PMR;EAAGPAPS(1)PMR;EAAGPAPS(1)PMR ;;; 167.3 4.76E-08 2648700000 3458000 4134340 3746750 1169931 4703560 3676380 3847510 4030570 3487730 3427620 TRUE FALSE FALSE 3215612.057 3806719.841 5197591.941 2723658.493 4113595.646 3222825.614 2884822.303 3112897.198 3790049.245 2569321.642 1.251541265 1.481605019 2.022943277 1.060069105 1.601043473 1.254348837 1.122795315 1.211563841 1.475116693 1 21.29295608 -6.14821876 1.333615818 1.212875604 1.51874734 0.196599013 0.26055258 0.729955869 2.647793173 0.117898869 0.117063049 7.11E-07 6.14821876 0.305871736 EAALPPVS(ph)PLK ddPTM_HeLa_A485_30min_R1 5 EAALPPVSPLK 11 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK ;;;; 166.6 5.05E-08 6627060000 13031300 9755240 7823350 18896000 12567600 9906380 15024100 11020500 9297660 22902600 TRUE FALSE FALSE 15930067.73 10896030.46 10717532.72 19928240.63 11316325.62 10425062.74 11814078.3 8317705.096 11163615.08 17193403.31 0.926522076 0.633733198 0.623351441 1.159063175 0.658178338 0.606340848 0.687128551 0.483773046 0.649296412 1 24.03535181 -5.946528335 24.99997393 0.650830296 0.818895942 0.126505973 0.1878688 180.9094249 84580.69968 0.057439165 0.065129885 1.13E-06 5.946528335 0.168065646 EAALPPVS(ph)PLK ddPTM_HeLa_A486_30min_R1 4 EAALPPVSPLK 11 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK ;;; 151.7 5.61E-07 4248440000 14356000 14146900 6994050 5932740 11498900 15319200 17842900 15331300 10806900 20081600 TRUE FALSE FALSE 13349718.53 13025848.12 9702333.467 13811718.54 10056600.74 13429272.86 13378417.7 11840697.67 11743650.79 15053036.65 0.886845548 0.86533026 0.64454327 0.91753703 0.668077875 0.892130483 0.888752084 0.786598608 0.780151611 1 23.84355122 EAALPPVS(ph)PLKAALSEEELEK ddPTM_HeLa_A485_30min_R1 2 EAALPPVSPLKAALSEEELEK 21 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLKAALSEEELEK;EAALPPVS(1)PLKAALSEEELEK ; 193.6 4.41E-20 1017390000 614840 582820 278910 799170 679910 780850 1366600 1409410 424650 1174520 TRUE FALSE FALSE 751609.0368 650975.7291 382090.4154 842826.6335 612215.7731 821734.0986 1074614.746 1063749.988 509873.3599 881733.7794 0.852421734 0.738290564 0.433339886 0.955874271 0.694331767 0.931952612 1.218751931 1.206429891 0.578262251 1 19.74998361 -6.395507026 4.289794363 1.024600336 0.731254991 0.271191675 0.206731466 0.297996654 9.001484342 0.075690323 0.065783871 4.02E-07 6.395507026 -0.293345345 EAALPPVS(ph)PLKAALSEEELEK ddPTM_HeLa_A486_30min_R1 2 EAALPPVSPLKAALSEEELEK 21 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLKAALSEEELEK;EAALPPVS(1)PLKAALSEEELEK ; 176.28 1.20E-14 703570000 340000 219930 88715 207990 216870 281210 460110 432070 158520 595160 TRUE FALSE FALSE 316167.7558 202501.9458 123067.8239 484211.2312 189668.1424 246517.1693 344985.6115 333697.093 172260.6412 446128.0622 0.708692823 0.453909904 0.275857616 1.085363761 0.42514282 0.552570417 0.773288302 0.747984988 0.386123752 1 18.76709837 -11.52855395 2.174434593 6.583727809 0.604144738 0.221127185 0.224583917 8319791.238 618241.4829 228721836.1 0.054831736 2.96E-12 11.52855395 -5.979583071 EAALPPVS(ph)PLKAALSEEELEKK ddPTM_HeLa_A485_30min_R1 4 EAALPPVSPLKAALSEEELEKK 22 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLKAALSEEELEKK;EAALPPVS(1)PLKAALSEEELEKK;EAALPPVS(1)PLKAALSEEELEKK;EAALPPVS(1)PLKAALSEEELEKK ;;; 161.49 4.59E-14 3748010000 1094580 772386 332448 1879030 1218830 1530630 3109710 3093110 761448 2940950 TRUE FALSE FALSE 1338065.545 862709.8238 455434.3495 1981676.651 1097479.006 1610771.42 2445295.055 2334519.923 914263.6292 2207825.289 0.606055901 0.390750948 0.206281879 0.897569505 0.497085984 0.72957377 1.107558223 1.057384357 0.414101439 1 21.07419458 -5.884789346 1.091917575 0.886617621 0.429474001 0.341537911 0.242622715 0.562091436 1.431404106 0.112290715 0.147711672 1.30E-06 5.884789346 -0.45714362 EAALPPVS(ph)PLKAALSEEELEKK ddPTM_HeLa_A486_30min_R1 3 EAALPPVSPLKAALSEEELEKK 22 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLKAALSEEELEKK;EAALPPVS(0.999)PLKAALS(0.001)EEELEKK;EAALPPVS(1)PLKAALSEEELEKK ;; 178.02 1.12E-15 3214170000 2523622 1520021 558083.1 2130100 1628149 2609656 4461697 4330579 1295444 6393040 TRUE FALSE FALSE 2346729.13 1399569 774187.8223 4958980.449 1423931.371 2287703.176 3345333.22 3344600.698 1407734.129 4792181.172 0.489699585 0.292052606 0.161552286 1.034806547 0.297136381 0.477382447 0.698081541 0.697928684 0.29375645 1 22.19225102 -14 0.139049286 2.637430052 0.325206819 0.270887302 0.247029299 190.4823572 1.62534712 87.33726564 1.550355805 1.00E-14 14 -2.312223233 EAALSTALSEK(ac)R ddPTM_HeLa_A485_30min_R1 1 EAALSTALSEKR 12 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 EAALSTALSEK(1)R 107.34 0.0082388 11135000 65436 39851 44935 89105 84807 47670 69781 58146 49316 118570 FALSE TRUE FALSE 79992.01245 44511.22779 61558.3264 93972.58052 76363.3173 50165.92749 54871.71929 43885.60233 59213.26885 89012.68112 0.898658612 0.500054905 0.691568051 1.055721267 0.857892565 0.563581805 0.616448337 0.493026407 0.665222844 1 16.44172326 -6.260684272 24.99763295 0.632769557 0.792168357 0.099887181 0.184679066 142.5141586 4717954.352 0.064131601 0.060584768 5.49E-07 6.260684272 0.1593988 EAAMLWLEY(ph)NTESRSQY(ph)LSS(ph)VLSQIRIDALS(ph)EVTQR ddPTM_HeLa_A485_30min_R1 1 EAAMLWLEYNTESRSQYLSSVLSQIRIDALSEVTQR 36 2 A0A087WXP9;Q8IY47 A0A087WXP9 KBTBD2 Kelch repeat and BTB domain-containing protein 2 4 0 EAAMLWLEY(0.692)NT(0.19)ES(0.205)RS(0.448)QY(0.48)LS(0.489)S(0.495)VLS(0.087)QIRIDALS(0.49)EVT(0.425)QR 41.07 0.019996 74750000 3673.9 10316 6189.4 3337 9869.8 8065.8 8247.7 7625.6 7494.5 6218.3 TRUE FALSE FALSE 4491.14638 11522.36646 8479.116622 3519.29186 8887.128057 8488.112816 6485.511517 5755.409644 8998.577406 4668.192249 0.962073998 2.468271624 1.816359775 0.753887516 1.903762224 1.8182869 1.389298292 1.232899019 1.927636422 1 12.18864826 -11.71334432 0.301133856 2.21E-13 1.635384769 0.106009245 0.487379296 133.0142059 4.269331108 87.40454237 0.501761025 1.93E-12 11.71334432 1.635384769 EAAMLWLEY(ph)NTESRSQY(ph)LSS(ph)VLSQIRIDALS(ph)EVTQR ddPTM_HeLa_A486_30min_R1 1 EAAMLWLEYNTESRSQYLSSVLSQIRIDALSEVTQR 36 2 A0A087WXP9;Q8IY47 A0A087WXP9 KBTBD2 Kelch repeat and BTB domain-containing protein 2 4 0 EAAMLWLEY(0.743)NT(0.152)ES(0.169)RS(0.44)QY(0.488)LS(0.5)S(0.508)VLS(0.066)QIRIDALS(0.512)EVT(0.423)QR 59.77 0.003597 66616000 0 0 2249.5 0 2091 2709.9 2107.2 0 1489.8 2349.2 TRUE FALSE FALSE 0 0 3120.566644 0 1828.727282 2375.58009 1579.956272 0 1618.937064 1760.945029 0 0 1.772097704 0 1.038491976 1.349037052 0.897220666 0 0.919356957 1 10.78213416 -4.619447061 23.89184291 0.832868336 0.000105675 0.315108915 0.511641909 10.95461331 2695.141398 0.128238667 0.339287683 2.40E-05 4.619447061 -0.832762661 EAANEAGDS(ph)S(ph)QDEAEDDVK ddPTM_HeLa_A486_30min_R1 2 EAANEAGDSSQDEAEDDVK 19 0 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 2 0 EAANEAGDS(1)S(1)QDEAEDDVK;EAANEAGDS(1)S(1)QDEAEDDVK ; 277.43 1.74E-72 0 320490 338290 159458 208911 310160 384590 484680 448790 258330 532700 TRUE FALSE FALSE 298025.306 311482.6684 221204.408 486355.3658 271256.8407 337143.196 363407.9376 346610.314 280722.2524 399308.4527 0.746353612 0.780055284 0.553968759 1.217994166 0.67931655 0.844317704 0.910093275 0.868026488 0.703021062 1 18.60714409 -14 0.023783075 2.086998648 5.92E-10 0.098173002 0.167745722 5930.327275 10.63325298 665.0807272 324.3021033 1.00E-14 14 -2.086998647 EAARS(ph)PDKPGGS(ph)PSASR ddPTM_HeLa_A485_30min_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.569)PS(0.349)AS(0.081)R 71.091 0.0047954 1038700000 201670 190660 165060 320890 322600 270660 351500 369760 256870 492580 TRUE FALSE FALSE 246530.7957 212956.0285 226122.5627 338419.4082 290480.8113 284831.3391 276399.1535 279075.7802 308421.4528 369788.8713 0.666679868 0.575885444 0.611490989 0.915169261 0.785531512 0.770253951 0.747451249 0.754689505 0.834047417 1 18.49634228 -4.895938053 0.063577185 1.371494963 1.42E-11 0.587706856 0.079265073 95.21714404 1.197067338 8.686252596 18.03067902 1.27E-05 4.895938053 -1.371494962 EAARS(ph)PDKPGGS(ph)PSASR ddPTM_HeLa_A486_30min_R1 2 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.463)PS(0.463)AS(0.074)R;EAARS(1)PDKPGGS(0.488)PS(0.311)AS(0.201)R ; 99.044 0.0006622 1277740000 927040 880590 525380 625770 910140 1032130 1372510 1285410 716900 1587130 TRUE FALSE FALSE 862059.2832 810808.8413 728821.2062 1456824.185 795981.7545 904796.2945 1029093.481 992750.2033 779041.4692 1189702.318 0.724600827 0.681522453 0.612608041 1.224528324 0.669059598 0.760523268 0.865000821 0.834452609 0.654820502 1 20.1821692 -11.6172133 2.104280858 5.255788822 0.786148373 0.134264709 0.166490956 8510307.152 431474.0767 173208959.1 0.042253835 2.41E-12 11.6172133 -4.469640448 EAARS(ph)PDKPGGS(ph)PSASRR ddPTM_HeLa_A485_30min_R1 2 EAARSPDKPGGSPSASRR 18 3 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.584)PS(0.238)AS(0.179)RR;EAARS(1)PDKPGGS(0.364)PS(0.364)AS(0.273)RR ; 79.426 0.0019409 1948250000 351240 437330 301490 503080 567220 444860 739030 861510 387590 756300 TRUE FALSE FALSE 429372.1262 488471.9392 413023.697 530561.9865 510745.5852 468152.1817 581130.2032 650223.3217 465375.7578 567768.3287 0.756245293 0.860336716 0.727451103 0.934469148 0.899566882 0.824547898 1.023534026 1.145226475 0.819657833 1 19.11494285 -5.995356111 0.74484966 1.002396491 0.783304736 0.390678138 0.09583688 0.716900594 0.884905524 0.061609908 0.081493975 1.01E-06 5.995356111 -0.219091756 EAARS(ph)PDKPGGS(ph)PSASRR ddPTM_HeLa_A486_30min_R1 1 EAARSPDKPGGSPSASRR 18 3 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.711)PS(0.202)AS(0.087)RR 78.271 0.0021881 865020000 379920 319940 196470 238490 344820 359850 516810 461540 217520 566180 TRUE FALSE FALSE 353289.5699 294586.7892 272548.4456 555216.7726 301569.4603 315455.3657 387498.6717 356457.4173 236374.8087 424404.8428 0.832435294 0.694117407 0.642189764 1.308224404 0.710570262 0.743288799 0.913040175 0.839899505 0.556955965 1 18.69508159 EAARS(ph)PDKPGGSPS(ph)ASR ddPTM_HeLa_A485_30min_R1 4 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.226)PS(0.561)AS(0.213)R;EAARS(0.908)PDKPGGS(0.224)PS(0.718)AS(0.149)R;EAARS(1)PDKPGGS(0.435)PS(0.53)AS(0.035)R;EAARS(0.997)PDKPGGS(0.283)PS(0.468)AS(0.252)R ;;; 96.881 0.0021532 7009100000 3786700 3413770 2563320 5973290 4875450 4054850 6313300 6581690 3227650 7760820 TRUE FALSE FALSE 4629038.351 3812980.706 3511598.737 6299595.708 4390033.079 4267155.676 4964411.88 4967520.208 3875409.749 5826190.401 0.794522326 0.654455217 0.602726395 1.081254692 0.753499762 0.732409239 0.852085417 0.852618927 0.66517046 1 22.47412142 -14 0.242116738 2.234382923 0.758725068 0.201151127 0.129402166 298.1670144 2.973783509 182.1936462 0.205616796 1.00E-14 14 -1.475657855 EAARS(ph)PDKPGGSPS(ph)ASR ddPTM_HeLa_A486_30min_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.19)PS(0.724)AS(0.086)R 114.76 0.00040557 2442400000 942220 896320 462180 621740 822700 1059500 1380900 1237400 670570 1460900 TRUE FALSE FALSE 876175.2436 825292.3389 641148.4736 1447442.141 719509.2946 928789.6622 1035384.214 955671.0323 728695.5475 1095081.131 0.800100758 0.753635795 0.585480341 1.321767036 0.657037432 0.848146896 0.945486307 0.872694274 0.665426083 1 20.06260633 -9.735601101 0.019695841 1.827613509 7.63E-06 0.043536741 0.197422296 4844.407966 20.26302874 1040.416756 844.2132735 1.84E-10 9.735601101 -1.827605878 EAARS(ph)PDKPGGSPSAS(ph)R ddPTM_HeLa_A486_30min_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 EAARS(1)PDKPGGS(0.328)PS(0.14)AS(0.532)R 110.6 0.00057209 686140000 365500 333870 188510 235880 343880 381820 538680 478770 259550 585890 TRUE FALSE FALSE 339880.3374 307412.9253 261506.1205 549140.5607 300747.3638 334714.9305 403896.5664 369764.5225 282048.003 439179.3305 0.773898756 0.699971296 0.595442687 1.250378883 0.684793985 0.762137257 0.919662057 0.841944274 0.642216023 1 18.74445063 -11.54195082 2.102133398 3.729529987 0.801931365 0.106124987 0.176408543 7681759.4 451106.208 100172225.8 0.043655811 2.87E-12 11.54195082 -2.927598621 EAARS(ph)PDKPGGSPSASR ddPTM_HeLa_A485_30min_R1 2 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(0.922)PDKPGGS(0.072)PS(0.003)AS(0.003)R;EAARS(0.922)PDKPGGS(0.034)PS(0.025)AS(0.019)R ; 78.324 0.0030794 2835090000 1074524 920281 801469 1703751 1500071 1336344 2042887 2015266 1172730 2392689 TRUE FALSE FALSE 1313548.157 1027899.858 1097965.735 1796822.603 1350718.664 1406312.905 1606407.504 1521018.854 1408086.154 1796235.666 0.731278296 0.572252225 0.611259288 1.000326759 0.751971854 0.78292227 0.894318899 0.846781345 0.783909473 1 20.77654521 -2.320698315 0.157316832 0.994936464 6.27E-15 0.414660551 0.104405381 44.38564236 0.658740912 0.370018481 9.472149064 0.004778611 2.320698315 -0.994936464 EAARS(ph)PDKPGGSPSASR ddPTM_HeLa_A486_30min_R1 3 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(0.358)PDKPGGS(0.336)PS(0.218)AS(0.087)R;EAARS(0.949)PDKPGGS(0.027)PS(0.004)AS(0.02)R;EAARS(0.997)PDKPGGS(0.003)PSASR ;; 101.75 0.00024962 1534100000 543706 483812 258861 283618 481729 528053 715380 676553 370071 789547 TRUE FALSE FALSE 505595.0171 445472.9751 359098.9117 660277.0373 421306.0569 462907.1897 536384.3575 522516.6509 402149.0522 591839.2921 0.854277544 0.752692464 0.606750712 1.11563569 0.711858882 0.782150148 0.906300688 0.882869147 0.67949029 1 19.17484595 -10.87567858 2.497307386 1.091580446 0.812774542 0.150904321 0.134925892 37635803.97 22154485.69 20402584.74 0.032622172 1.33E-11 10.87567858 -0.278805904 EAARS(ph)PDKPGGSPSASRR ddPTM_HeLa_A485_30min_R1 1 EAARSPDKPGGSPSASRR 18 3 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(1)PDKPGGSPSASRR 132.72 6.46E-06 177450000 103000 166190 106320 104770 179980 194390 271180 417920 120990 149840 TRUE FALSE FALSE 125911.9947 185624.4748 145652.1923 110493.3198 162060.5593 204567.9598 213240.1777 315424.4647 145271.5832 112487.6456 1.119340653 1.650176549 1.294828348 0.982270713 1.440696517 1.818581576 1.895676423 2.804080955 1.291444784 1 16.77940703 -6.218165555 3.334200989 1.891363759 1.285254746 0.175662537 0.473906603 0.347425934 7.895782623 0.164068051 0.15780636 6.05E-07 6.218165555 -0.606109013 EAARS(ph)PDKPGGSPSASRR ddPTM_HeLa_A486_30min_R1 2 EAARSPDKPGGSPSASRR 18 3 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(1)PDKPGGSPSASRR;EAARS(1)PDKPGGSPSASRR ; 152.96 2.27E-08 262280000 163372 117542 81222 95597 150673 115517 190359 199569 78983 230695 TRUE FALSE FALSE 151920.4665 108227.5438 112673.3336 222554.6472 131774.1874 101265.687 142729.1648 154131.4953 85829.31003 172927.4704 0.878521302 0.625855126 0.651564111 1.28698261 0.762019979 0.585596301 0.825370107 0.891307176 0.496331264 1 17.39980754 -5.967707753 24.99997 0.747782934 0.853449225 0.048280611 0.214686131 695.9700547 538802.3697 0.06798358 0.077085618 1.08E-06 5.967707753 0.105666291 EAARSPDKPGGS(ph)PSASR ddPTM_HeLa_A486_30min_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARSPDKPGGS(0.478)PS(0.044)AS(0.478)R 120.23 3.61E-05 2784300000 563870 509890 269180 304700 514760 588360 806580 741280 443840 813760 TRUE FALSE FALSE 524345.6248 469484.4594 373413.7049 709356.9987 450194.0009 515774.1252 604765.1529 572506.726 482312.4086 609989.1993 0.859598212 0.769660282 0.612164454 1.162900916 0.73803602 0.845546324 0.991435838 0.938552234 0.79069008 1 19.21842417 -1 0.11263996 1.030446059 0.251060794 0.113025789 0.140667323 228.9696422 1.797100089 1.198439065 27.80160466 0.1 1 -0.779385265 EAARSPDKPGGS(ph)PSASRR ddPTM_HeLa_A485_30min_R1 2 EAARSPDKPGGSPSASRR 18 3 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(0.002)PDKPGGS(0.589)PS(0.131)AS(0.278)RR;EAARS(0.066)PDKPGGS(0.846)PS(0.06)AS(0.028)RR ; 108.98 0.00067955 833380000 254254 458190 255877 285667 503425 576160 816630 1120030 344190 424079 TRUE FALSE FALSE 310811.9251 511771.3348 350536.5502 301272.2649 453302.2394 606326.8467 642150.3292 845340.8864 413265.7759 318363.9099 0.976278766 1.607504239 1.101056179 0.946314125 1.423849329 1.904508733 2.017032425 2.655266065 1.298092413 1 18.28031727 -6.129840542 3.551016171 1.8940786 1.185248913 0.274000392 0.451929552 0.279296248 6.411178487 0.150992701 0.152099956 7.42E-07 6.129840542 -0.708829687 EAARSPDKPGGSPSAS(ph)R ddPTM_HeLa_A485_30min_R1 3 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(0.012)PDKPGGS(0.128)PS(0.245)AS(0.614)R;EAARS(0.024)PDKPGGS(0.012)PS(0.009)AS(0.955)R;EAARS(0.008)PDKPGGS(0.145)PS(0.14)AS(0.707)R ;; 110.34 0.00011261 5052630000 912280 904200 708750 1470030 1338870 1043350 1720320 1595210 924840 2019870 TRUE FALSE FALSE 1115213.539 1009938.325 970946.1185 1550334.017 1205567.402 1097978.193 1352759.578 1203982.246 1110446.905 1516353.582 0.73545745 0.666030889 0.640316434 1.022409308 0.795043726 0.724091139 0.892113551 0.793998353 0.732313966 1 20.53217477 -14 0.059104813 1.681087746 0.478161045 0.287961255 0.105382399 595.0303141 2.566570842 61.43851084 10.49232801 1.00E-14 14 -1.202926701 EAARSPDKPGGSPSAS(ph)R ddPTM_HeLa_A486_30min_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(0.002)PDKPGGS(0.286)PS(0.286)AS(0.427)R 100.28 0.00029974 2526400000 426780 428680 217880 238200 451710 450560 645620 580040 309820 621940 TRUE FALSE FALSE 396864.9259 394709.8356 302248.971 554541.638 395052.3198 394974.4882 484079.0473 447977.5542 336675.4471 466202.1759 0.851272144 0.846649492 0.648321665 1.189487451 0.847384118 0.84721717 1.038345749 0.96090833 0.722166186 1 18.83059621 -5.228010842 24.99975067 0.937932752 0.788538001 0.245145893 0.129498867 997.9166295 746297.3895 0.034577494 0.059885769 5.92E-06 5.228010842 -0.149394751 EAAS(ph)SPAGEPLRK ddPTM_HeLa_A485_30min_R1 3 EAASSPAGEPLRK 13 1 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 EAAS(0.5)S(0.5)PAGEPLRK;EAAS(0.5)S(0.5)PAGEPLRK;EAAS(0.558)S(0.442)PAGEPLRK ;; 89.911 0.00095748 772560000 647490 645360 548320 933150 734850 718070 931970 874860 613350 1196720 TRUE FALSE FALSE 791521.9167 720829.2381 751166.3855 984125.6216 661685.7538 755667.0349 732846.996 660299.2133 736443.719 898399.728 0.881035348 0.802348015 0.836115998 1.095420658 0.736515977 0.841125627 0.815724864 0.734972633 0.819728341 1 19.77699797 EAAS(ph)SPAGEPLRK ddPTM_HeLa_A486_30min_R1 2 EAASSPAGEPLRK 13 1 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 EAAS(0.5)S(0.5)PAGEPLRK;EAAS(0.5)S(0.5)PAGEPLRK ; 104.41 0.00026361 945150000 777550 789340 435580 288850 685630 749740 865260 849520 626930 979490 TRUE FALSE FALSE 723047.7603 726789.8237 604248.2412 672457.3977 599631.8922 657244.7016 648762.7962 656102.8409 681272.7972 734219.3286 0.984784426 0.989881082 0.82298057 0.915880816 0.816693144 0.895161263 0.883608986 0.893606059 0.927887309 1 19.48585157 -10.18795878 13.65133885 1.000001946 0.900272438 0.219933803 0.054300971 0 0 0.05447176 0.013211342 6.49E-11 10.18795878 -0.099729508 EAASGT(ph)TPQK ddPTM_HeLa_A485_30min_R1 2 EAASGTTPQK 10 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 EAAS(0.001)GT(0.5)T(0.5)PQK;EAAS(0.003)GT(0.499)T(0.499)PQK ; 168.05 1.70E-06 2444940000 1525180 1426150 520270 2610500 680440 1746330 1494000 2301700 1396980 2754100 TRUE FALSE FALSE 1864451.029 1592925.837 712739.5232 2753105.005 612693.0044 1837765.138 1174794.695 1737204.466 1677341.072 2067553.555 0.90176674 0.77043994 0.344726027 1.331576151 0.296337187 0.888859751 0.568205207 0.840222233 0.8112685 1 20.97949327 -8.08522949 1.487096761 0.996824853 0.730181029 0.073205048 0.281010477 1.36887656 6.579843011 0.249410095 0.073480371 8.22E-09 8.08522949 -0.266643825 EAASGT(ph)TPQK ddPTM_HeLa_A486_30min_R1 2 EAASGTTPQK 10 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 EAAS(0.012)GT(0.494)T(0.494)PQK;EAASGT(0.5)T(0.5)PQK ; 176.61 3.05E-07 1882610000 3617100 1085680 2077440 1172600 1224210 5870300 2362410 2047860 4543700 4712800 TRUE FALSE FALSE 3363559.969 999646.7628 2881880.404 2729872.06 1070658.166 5146082.071 1771310.031 1581606.982 4937551.574 3532684.205 0.952125855 0.282970881 0.8157764 0.772747266 0.303072141 1.456705942 0.501406276 0.447706868 1.397677032 1 21.75233336 -6.215023907 24.99997664 0.897477529 0.625087528 0.165340866 0.363107569 948.1311829 510675.7017 0.11751283 0.117512546 6.10E-07 6.215023907 -0.272390001 EAASGTT(ph)PQK ddPTM_HeLa_A485_30min_R1 4 EAASGTTPQK 10 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 EAAS(0.004)GT(0.153)T(0.843)PQK;EAASGT(0.146)T(0.854)PQK;EAASGT(0.133)T(0.867)PQK;EAASGT(0.137)T(0.863)PQK ;;; 167.83 1.73E-06 4757520000 11006100 10493700 3738080 19715800 4985620 13389400 10910300 17296600 11084600 20578200 TRUE FALSE FALSE 13454368.97 11720846.93 5120951.346 20792824.23 4489234.167 14090448.28 8579225.276 13054581.73 13309177.55 15448433.45 0.87092125 0.758707798 0.331486773 1.345950338 0.290594783 0.912095606 0.555345971 0.845042429 0.861522794 1 23.88095721 -7.847450132 1.848695269 0.989632474 0.724745291 0.08176255 0.286965208 0.814599034 5.800676196 0.252772706 0.073110376 1.42E-08 7.847450132 -0.264887183 EAASGTT(ph)PQK ddPTM_HeLa_A486_30min_R1 2 EAASGTTPQK 10 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 EAAS(0.003)GT(0.327)T(0.67)PQK;EAASGT(0.159)T(0.841)PQK ; 135.15 0.00023439 1134220000 4473100 1572050 2694230 1440610 1725160 7683300 3059510 2667230 5826000 6026900 TRUE FALSE FALSE 4159558.789 1447475.033 3737508.01 3353812.884 1508774.346 6735412.564 2293988.238 2059959.954 6331002.371 4517725.011 0.920719782 0.320399101 0.827298696 0.742367647 0.333967725 1.49088591 0.507775093 0.455972851 1.401369573 1 22.10716503 EAASS(ph)PAGEPLR ddPTM_HeLa_A485_30min_R1 2 EAASSPAGEPLR 12 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 EAAS(0.005)S(0.995)PAGEPLR;EAAS(0.001)S(0.999)PAGEPLR ; 223.36 4.43E-23 3920300000 2361700 3034400 2903100 2564040 3322300 2798400 2878600 3020500 2792700 2984500 TRUE FALSE FALSE 2887052.017 3389246.684 3977077.498 2704107.013 2991520.147 2944919.897 2263563.594 2279717.639 3353169.274 2240519.076 1.288563909 1.512706016 1.775069689 1.206910953 1.335190661 1.314391798 1.010285348 1.017495304 1.49660376 1 21.09540158 -5.854823485 1.293781708 1.152229265 1.505406933 0.3462729 0.19360807 0.491822218 1.72832597 0.080419785 0.104553879 1.40E-06 5.854823485 0.353177668 EAASS(ph)PAGEPLR ddPTM_HeLa_A486_30min_R1 4 EAASSPAGEPLR 12 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 EAAS(0.421)S(0.579)PAGEPLR;EAAS(0.005)S(0.995)PAGEPLR;EAAS(0.016)S(0.984)PAGEPLR;EAAS(0.071)S(0.929)PAGEPLR ;;; 208.51 2.25E-17 4682190000 3816330 4344840 3451290 1150813 4106660 3688070 3891890 3829530 3377820 4066120 TRUE FALSE FALSE 3548824.975 4000539.055 4787721.917 2679150.823 3591564.41 3233073.421 2918097.958 2957629.617 3670612.157 3047937.086 1.164336689 1.312539905 1.57080733 0.879004634 1.178359103 1.060741521 0.957400982 0.970370954 1.204293938 1 21.53940169 -5.269021967 24.99960861 1.038224417 1.345559172 0.547730171 0.130514775 429.5870271 1416338.197 0.036421525 0.05520492 5.38E-06 5.269021967 0.307334755 EAASSSSGTQPAPPAPAS(ph)PWDSKK ddPTM_HeLa_A485_30min_R1 3 EAASSSSGTQPAPPAPASPWDSKK 24 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 EAASSSSGTQPAPPAPAS(0.987)PWDS(0.013)KK;EAASSSSGTQPAPPAPAS(0.998)PWDS(0.002)KK;EAASSSSGTQPAPPAPAS(0.983)PWDS(0.017)KK ;; 182.14 1.19E-20 4259560000 2481510 1942440 1186230 3696550 2607220 2797380 4139190 4170370 1886160 4902860 TRUE FALSE FALSE 3033513.338 2169591.461 1625065.84 3898483.166 2347636.022 2943846.491 3254818.242 3147580.219 2264695.011 3680667.232 0.824174843 0.589456021 0.441513926 1.059178383 0.637828924 0.799813269 0.884301143 0.855165659 0.615294692 1 21.81153589 -5.250490924 24.99512585 0.822160639 0.615489062 0.286202296 0.156371674 981.0250472 2239658.434 0.041303177 0.070675846 5.62E-06 5.250490924 -0.206671577 EAASSSSGTQPAPPAPAS(ph)PWDSKK ddPTM_HeLa_A486_30min_R1 3 EAASSSSGTQPAPPAPASPWDSKK 24 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 EAASSSSGTQPAPPAPAS(0.989)PWDS(0.011)KK;EAASSSSGTQPAPPAPAS(0.959)PWDS(0.041)KK;EAASSSSGTQPAPPAPAS(0.962)PWDS(0.038)KK ;; 179.17 1.43E-20 4118700000 2125280 1865060 762960 1101010 1563040 2135270 2961850 2609320 1547220 3555500 TRUE FALSE FALSE 1976308.847 1717265.853 1058398.545 2563206.922 1366988.948 1871842.097 2220763.803 2015234.797 1681334.275 2665179.658 0.741529315 0.644333994 0.3971209 0.961738889 0.512906867 0.702332427 0.83325107 0.756134691 0.630852134 1 21.34580136 -14 0.173430294 2.243580438 0.615843532 0.288651896 0.149100051 168.3490093 1.599099014 71.96547306 0.501076902 1.00E-14 14 -1.627736906 EAATQEDPEQLPELEAHGVS(ph)ES(ph)EGEERPVAEEEILLR ddPTM_HeLa_A485_30min_R1 2 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 EAATQEDPEQLPELEAHGVS(1)ES(1)EGEERPVAEEEILLR;EAATQEDPEQLPELEAHGVS(1)ES(1)EGEERPVAEEEILLR ; 153.62 1.71E-09 1227704000 161343 216200 239118 169214 254671 219170 259770 272742 201561 233120 TRUE FALSE FALSE 197233.1937 241482.7093 327577.6987 178457.7323 229315.061 230645.4023 204268.0174 205851.5969 242012.4439 175007.4743 1.126998687 1.379842263 1.87179262 1.019714919 1.310315814 1.317917439 1.167195963 1.176244602 1.382869188 1 17.41705701 -5.32524312 24.99992369 1.212268795 1.451591672 0.253607222 0.205529114 308.7994672 120994.634 0.057645587 0.085502202 4.73E-06 5.32524312 0.239322878 EAATQEDPEQLPELEAHGVS(ph)ES(ph)EGEERPVAEEEILLR ddPTM_HeLa_A486_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 EAATQEDPEQLPELEAHGVS(1)ES(1)EGEERPVAEEEILLR 130.25 4.60E-06 979660000 59221 82725 79900 29868 109410 77541 81430 96832 73837 84319 TRUE FALSE FALSE 55069.91372 76169.56972 110839.4198 69534.21345 95686.77759 67974.7798 61055.35272 74785.46743 80237.25061 63204.97358 0.871290827 1.205119873 1.753650283 1.10013832 1.513912152 1.075465679 0.965989688 1.183221243 1.269476848 1 15.94775047 -6.325507166 24.97462277 1.101979248 1.29951491 0.14044599 0.234199521 434.6311032 169424.3514 0.08380194 0.073906374 4.73E-07 6.325507166 0.197535662 EAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLR ddPTM_HeLa_A485_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 EAATQEDPEQLPELEAHGVS(0.956)ES(0.044)EGEERPVAEEEILLR 168.49 8.47E-15 1937400000 101560 133830 172930 103410 169920 173460 135720 199970 165280 132850 TRUE FALSE FALSE 124151.6716 149480.2543 236904.0032 109059.0265 153002.1682 182542.0974 106722.3133 150927.044 198450.18 99732.93992 1.24484119 1.498805254 2.375383734 1.093510595 1.5341187 1.830308998 1.070080892 1.513311891 1.989815803 1 16.60578246 EAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLR ddPTM_HeLa_A486_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 EAATQEDPEQLPELEAHGVS(0.923)ES(0.077)EGEERPVAEEEILLR 182.68 2.82E-21 406910000 127100 141700 137320 55718 180250 138060 156970 151330 152460 171910 TRUE FALSE FALSE 118190.9463 130471.1759 190493.9816 129714.3198 157641.3642 121027.5609 117694.4457 116875.4625 165675.3556 128862.6171 0.917185675 1.012482743 1.478271867 1.006609386 1.223328905 0.939198378 0.913332729 0.906977254 1.285674304 1 16.97547427 -6.269670065 24.63030511 0.997241125 1.13394443 0.100532279 0.175003129 1147.990848 3435349.225 0.06189027 0.055514544 5.37E-07 6.269670065 0.136703305 EAATQEDPEQLPELEAHGVSES(ph)EGEERPVAEEEILLR ddPTM_HeLa_A485_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 EAATQEDPEQLPELEAHGVS(0.161)ES(0.839)EGEERPVAEEEILLR 220.42 9.40E-40 144210000 29998 44419 37253 30184 51157 40943 43682 53678 36021 42205 TRUE FALSE FALSE 36670.95161 49613.41566 51034.43493 31832.87549 46063.62946 43086.71217 34348.98385 40513.38634 43250.0843 31684.07023 1.157393963 1.565878857 1.610728501 1.004696532 1.453841919 1.359885642 1.084108942 1.278667357 1.365041928 1 14.95147006 -13.79602483 0.114004565 1.48E-08 1.500851698 0.218333906 0.185853961 231.1757865 1.813972361 54.19633327 2.140766609 1.60E-14 13.79602483 1.500851683 EAAVSASDILQESAIHS(ph)PGTVEK ddPTM_HeLa_A485_30min_R1 4 EAAVSASDILQESAIHSPGTVEK 23 0 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 0 EAAVSASDILQESAIHS(1)PGTVEK;EAAVSASDILQESAIHS(1)PGTVEK;EAAVSASDILQESAIHS(0.865)PGT(0.135)VEK;EAAVSASDILQESAIHS(0.999)PGT(0.001)VEK ;;; 340.49 4.00E-123 4997190000 1577887 1717956 1396201 1745382 2195893 1764786 2480941 2381114 1652625 2432526 TRUE FALSE FALSE 1928882.52 1918856.01 1912713.851 1840727.799 1977262.183 1857187.466 1950867.688 1797142.058 1984291.679 1826142.036 1.056260949 1.050770407 1.047406945 1.007987201 1.082753775 1.017000556 1.068300083 0.984119539 1.086603145 1 20.80036755 EAAVSASDILQESAIHS(ph)PGTVEK ddPTM_HeLa_A486_30min_R1 4 EAAVSASDILQESAIHSPGTVEK 23 0 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 0 EAAVSASDILQESAIHS(0.994)PGT(0.006)VEK;EAAVSASDILQESAIHS(1)PGTVEK;EAAVSASDILQESAIHS(0.989)PGT(0.011)VEK;EAAVSASDILQESAIHS(0.989)PGT(0.011)VEK ;;; 288.32 5.29E-76 4398940000 1716458 1733009 1165127 343810.9 1744258 1773006 2098781 1951021 1519916 1869423 TRUE FALSE FALSE 1596143.158 1595679.055 1616295.378 800409.1504 1525476.897 1554270.546 1573643.795 1506816.109 1651663.543 1401307.313 1.139038627 1.138707435 1.153419641 0.57118745 1.088609817 1.109157522 1.122982647 1.075293117 1.178659047 1 20.41834195 -5.967964039 24.99999895 1.103018593 0.997436707 0.075754894 0.162347432 545.9427003 426036.6971 0.052912756 0.059997091 1.08E-06 5.967964039 -0.105581886 EADIDS(ph)S(ph)DES(ph)DIEEDIDQPSAHK ddPTM_HeLa_A485_30min_R1 2 EADIDSSDESDIEEDIDQPSAHK 23 0 Q9P2I0 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 3 0 EADIDS(1)S(1)DES(1)DIEEDIDQPSAHK;EADIDS(1)S(1)DES(1)DIEEDIDQPSAHK ; 240.46 7.70E-49 2103300000 1510550 1546160 1248150 1605940 2241090 1598660 2515680 2433480 1501940 2455190 TRUE FALSE FALSE 1846566.636 1726969.962 1709892.625 1693668.436 2017959.211 1682363.366 1978184.417 1836665.214 1803365.581 1843156.317 1.00185026 0.936963374 0.927698106 0.918895712 1.094838887 0.912762173 1.073259169 0.996478268 0.978411632 1 20.813747 -5.685820432 24.99999999 1.007503666 0.944348692 0.265247933 0.051222777 50.6351867 16738.37361 0.014349775 0.018525476 2.06E-06 5.685820432 -0.063154974 EADIDS(ph)S(ph)DES(ph)DIEEDIDQPSAHK ddPTM_HeLa_A486_30min_R1 2 EADIDSSDESDIEEDIDQPSAHK 23 0 Q9P2I0 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 3 0 EADIDS(1)S(1)DES(1)DIEEDIDQPSAHK;EADIDS(1)S(1)DES(1)DIEEDIDQPSAHK ; 215.79 5.60E-38 1638950000 1110440 1242160 678830 157252 1231670 1151520 1435640 1303450 938020 1088370 TRUE FALSE FALSE 1032603.89 1143726.718 941691.1557 366090.6031 1077182.464 1009457.17 1076427.687 1006682.889 1019328.329 815835.0679 1.265701771 1.401909237 1.154266582 0.448731144 1.32034342 1.237329958 1.319418262 1.233929416 1.249429412 1 19.637918 EADLVFISVNT(ph)PTK ddPTM_HeLa_A485_30min_R1 1 EADLVFISVNTPTK 14 0 O60701;E7ER83;E7ETF4;E7EV97 O60701 UGDH UDP-glucose 6-dehydrogenase 1 0 EADLVFISVNT(0.993)PT(0.006)K 160.48 4.09E-11 38648000 35277 34483 34953 46634 46034 32790 41512 35986 29224 54076 TRUE FALSE FALSE 43124.24695 38515.48689 47883.56922 49181.49734 41450.69332 34506.8337 32642.62208 27160.37708 35088.98874 40595.8484 1.062282195 0.948754329 1.17951887 1.211490812 1.021057447 0.850008931 0.804087693 0.669043219 0.864349192 1 15.30904457 -6.22099993 3.079947347 0.809748635 1.096883385 0.598539805 0.101684388 0.174433205 3.337303486 0.037655528 0.036037792 6.01E-07 6.22099993 0.28713475 EAEAAIYHLQLFEELR ddPTM_HeLa_A485_30min_R1 2 EAEAAIYHLQLFEELR 16 0 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 168.07 1.05E-10 29582000 26966 31376 28194 37358 34900 28311 41081 37066 26896 51376 FALSE FALSE TRUE 32964.49367 35045.15027 38624.13385 39398.77294 31425.23346 29793.32018 32303.70875 27975.50538 32293.7805 38568.90871 0.854690858 0.908637331 1.001431857 1.021516404 0.814781504 0.772469878 0.837558278 0.725338267 0.837300862 1 15.23515071 -5.783412506 24.6764646 0.814885579 0.947778452 0.322705602 0.079758998 207.2086436 232700.0896 0.024371676 0.02765888 1.65E-06 5.783412506 0.132892873 EAEAAIYHLQLFEELR ddPTM_HeLa_A486_30min_R1 1 EAEAAIYHLQLFEELR 16 0 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 134.44 3.46E-05 34256000 42023 46638 49220 22785 57763 53760 50410 47760 51454 53431 FALSE FALSE TRUE 39077.40471 42942.23503 68279.30216 53044.63149 50517.82592 47127.63779 37796.88482 36886.09059 55914.07415 40051.52982 0.975678205 1.072174651 1.70478637 1.324409622 1.261320757 1.176675098 0.943706395 0.920965835 1.396053394 1 15.28956973 -6.472982887 3.611457469 1.057961394 1.282872113 0.158378569 0.216748354 0.441434748 11.67261766 0.087310711 0.07259438 3.37E-07 6.472982887 0.224910719 EAEAAIYHLQLFEELRR ddPTM_HeLa_A485_30min_R1 5 EAEAAIYHLQLFEELRR 17 1 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;; ;;;; 227.22 2.69E-34 758706000 396503 504596 500166 423069 529816 525825 664301 769436 454642 590801 FALSE FALSE TRUE 484703.7244 563604.1128 685198.217 446180.1882 477065.6587 553356.3839 522367.6645 580730.6146 545884.4792 443525.1836 1.092843749 1.270737567 1.544891344 1.005986142 1.075622482 1.247632388 1.177763256 1.309352064 1.230785758 1 18.7586565 -10.86799883 2.493367413 0.896657897 1.22055381 0.17374772 0.141993515 49852920.07 28703072.52 30484421.22 0.036298446 1.36E-11 10.86799883 0.323895913 EAEAAIYHLQLFEELRR ddPTM_HeLa_A486_30min_R1 5 EAEAAIYHLQLFEELRR 17 1 P14618;P14618-3;B4DNK4 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;; ;;;; 224.19 3.90E-34 723043000 484985 537293 526217 272554 731995 614997 716838 713652 587858 645476 FALSE FALSE TRUE 450990.056 494715.9459 729982.315 634519.4861 640181.3615 539124.923 537477.5505 551169.0185 638814.0048 483844.6083 0.932096893 1.022468655 1.508712307 1.311411712 1.323113559 1.114252208 1.110847452 1.139144695 1.320287534 1 18.88418426 -6.295270893 24.47972742 1.143974233 1.229777951 0.055299011 0.166910221 1786.353257 1292558.751 0.063282188 0.055813569 5.07E-07 6.295270893 0.085803718 EAEALLQSMGLTPES(ph)PIVPPPMS(ph)PSSK ddPTM_HeLa_A486_30min_R1 1 EAEALLQSMGLTPESPIVPPPMSPSSK 27 0 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 2 0 EAEALLQS(0.012)MGLT(0.051)PES(0.935)PIVPPPMS(0.767)PS(0.189)S(0.047)K 52.777 0.033231 13959000 16087 14025 9716.4 9306.4 14311 16356 18223 19210 13699 18963 TRUE FALSE FALSE 14959.38437 12913.60792 13478.85029 21665.76952 12515.98094 14338.16302 13663.41266 14836.30235 14886.44035 14214.54137 1.052400073 0.90847869 0.94824377 1.524197577 0.880505435 1.008696844 0.961227823 1.043741192 1.047268425 1 13.79507993 EAEALLQSMGLTPESPIVPPPMS(ph)PSSK ddPTM_HeLa_A485_30min_R1 7 EAEALLQSMGLTPESPIVPPPMSPSSK 27 0 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 EAEALLQSMGLTPESPIVPPPMS(0.664)PS(0.145)S(0.191)K;EAEALLQSMGLTPESPIVPPPMS(0.702)PS(0.24)S(0.058)K;EAEALLQSMGLTPESPIVPPPMS(0.711)PS(0.144)S(0.144)K;EAEALLQSMGLTPESPIVPPPMS(0.682)PS(0.198)S(0.12)K;EAEALLQSMGLTPESPIVPPPMS(0.843)PS(0.13)S(0.027)K;EAEALLQSMGLTPESPIVPPPMS(0.795)PS(0.169)S(0.036)K;EAEALLQSMGLTPESPIVPPPMS(0.806)PS(0.161)S(0.033)K ;;;;;; 177.46 5.17E-15 2156091000 1031699 963529 770907 1116637 1232247 1119602 1562402 1500836 884709 1588407 TRUE FALSE FALSE 1261196.883 1076205.335 1056097.579 1177636.052 1109560.162 1178222.629 1228582.049 1132753.618 1062261.981 1192446.367 1.057655017 0.902518859 0.885656251 0.98757989 0.930490622 0.988071801 1.030303821 0.949940936 0.890825793 1 20.18549295 -6.264316945 24.83493017 0.972354487 0.948192051 0.024887793 0.056002125 961.1882579 8295541.787 0.019712888 0.018209794 5.44E-07 6.264316945 -0.024162436 EAEALLQSMGLTPESPIVPPPMS(ph)PSSK ddPTM_HeLa_A486_30min_R1 7 EAEALLQSMGLTPESPIVPPPMSPSSK 27 0 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 EAEALLQSMGLTPESPIVPPPMS(0.952)PS(0.041)S(0.008)K;EAEALLQSMGLTPESPIVPPPMS(0.703)PS(0.24)S(0.058)K;EAEALLQSMGLTPESPIVPPPMS(0.717)PS(0.126)S(0.157)K;EAEALLQSMGLTPESPIVPPPMS(0.84)PS(0.132)S(0.028)K;EAEALLQSMGLTPESPIVPPPMS(0.803)PS(0.163)S(0.034)K;EAEALLQSMGLTPESPIVPPPMS(0.809)PS(0.165)S(0.026)K;EAEALLQSMGLTPESPIVPPPMS(0.721)PS(0.139)S(0.139)K ;;;;;; 139.11 7.16E-07 1737140000 1320119 1215949 775746 546852 1234256 1269937 1587250 1548419 992799 1641085 TRUE FALSE FALSE 1227585.475 1119592.773 1076135.626 1273099.092 1079444.103 1113265.085 1190103.262 1195877.795 1078855.617 1230146.634 0.997918005 0.910129526 0.874802724 1.034916535 0.877492222 0.904985677 0.967448293 0.972142476 0.877013834 1 20.23039887 -10.97839021 11.59810144 1.036458268 0.93507251 0.118201557 0.053091314 0.038856402 7.24E-05 0.039908344 0.012029012 1.05E-11 10.97839021 -0.101385758 EAEALLQSMGLTPESPIVPPPMSPS(ph)SK ddPTM_HeLa_A485_30min_R1 1 EAEALLQSMGLTPESPIVPPPMSPSSK 27 0 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 EAEALLQSMGLTPES(0.001)PIVPPPMS(0.301)PS(0.349)S(0.349)K 56.625 0.015884 34910000 17852 15374 12313 16639 16364 15299 21269 24707 12866 22776 TRUE FALSE FALSE 21823.11581 17171.85556 16868.09109 17547.94644 14734.7427 16100.03198 16724.7044 18647.56951 15448.08819 17098.36236 1.276327835 1.00429826 0.986532554 1.026293985 0.861763389 0.941612515 0.978146564 1.090605586 0.903483495 1 14.06157053 -4.245885427 3.305853874 0.974197241 1.323322238 0.694496355 0.05986082 0.2015605 3.500065211 0.015513058 0.18295327 5.68E-05 4.245885427 0.349124997 EAEAYTGLS(ph)PPVPSFNCEVR ddPTM_HeLa_A485_30min_R1 1 EAEAYTGLSPPVPSFNCEVR 20 0 O43164-2;O43164 O43164-2 PJA2 E3 ubiquitin-protein ligase Praja-2 1 0 EAEAYTGLS(1)PPVPSFNCEVR 121.82 3.10E-06 84358000 92728 94065 100340 95986 93860 101580 96477 92682 90301 112350 TRUE FALSE FALSE 113355.0237 105065.0835 137459.9415 101229.4721 84514.96884 106898.5717 75863.90081 69951.59418 108423.5824 84343.21265 1.343973275 1.245685103 1.62976886 1.200208872 1.002036396 1.267423523 0.899466577 0.829368386 1.285504536 1 16.36398435 -5.512878248 6.246622714 1.046402484 1.395470925 0.499443028 0.160939864 0.130264696 21.83055416 0.046831915 0.065258509 3.07E-06 5.512878248 0.349068441 EAEAYTGLS(ph)PPVPSFNCEVR ddPTM_HeLa_A486_30min_R1 2 EAEAYTGLSPPVPSFNCEVR 20 0 O43164-2;O43164 O43164-2 PJA2 E3 ubiquitin-protein ligase Praja-2 1 0 EAEAYTGLS(1)PPVPSFNCEVR;EAEAYTGLS(1)PPVPSFNCEVR ; 211.43 8.13E-27 165824000 218036 255100 165876 52712 175031 199677 211577 199062 183074 234239 TRUE FALSE FALSE 202752.8023 234884.9469 230107.6295 122716.1999 153076.9799 175042.8819 158638.1968 153739.9281 198943.0017 175584.0298 1.154733734 1.337735256 1.310527101 0.69890297 0.871816076 0.996918012 0.903488757 0.875591751 1.133035858 1 17.4218021 -5.241156926 24.89087211 0.920294783 1.274672408 0.65221977 0.114357307 458.2584475 562379.509 0.031005076 0.05361455 5.74E-06 5.241156926 0.354377625 EAEDS(ph)DS(ph)DDNIKR ddPTM_HeLa_A485_30min_R1 5 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR ;;;; 180.3 2.18E-17 5937870000 7809980 6016390 4396600 12803990 8366810 7476670 12665550 11235980 6339300 15997880 TRUE FALSE FALSE 9547283.107 6719954.475 6023085.298 13503439.55 7533781.019 7868136.88 9959451.774 8480338.288 7611539.362 12009902.94 0.794950897 0.559534453 0.501509906 1.124358758 0.627297411 0.655137425 0.829269964 0.706112142 0.63377193 1 23.51772116 -11.11423508 2.496538422 1.550274472 0.714677903 0.210565668 0.165747746 7818454.127 2594708.023 24445097.9 0.040808718 7.69E-12 11.11423508 -0.835596569 EAEDS(ph)DS(ph)DDNIKR ddPTM_HeLa_A486_30min_R1 4 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR;EAEDS(1)DS(1)DDNIKR ;;; 210.08 3.21E-22 10813300000 7746500 7380800 3484410 4719840 6504200 8929800 11898800 10918300 5708180 13431700 TRUE FALSE FALSE 7203510.353 6795918.528 4833666.868 10988026.05 5688382.587 7828132.068 8921594.387 8432441.435 6202969.638 10068314.89 0.715463355 0.674980729 0.480086978 1.091347079 0.564978613 0.777501712 0.886106015 0.837522617 0.616088164 1 23.26331891 -14 0.093784519 1.754716055 0.559864741 0.182643451 0.165651729 351.5689117 2.269261423 53.73309196 3.376420563 1.00E-14 14 -1.194851314 EAEDS(ph)DSDDNIKR ddPTM_HeLa_A485_30min_R1 2 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 0 EAEDS(0.998)DS(0.002)DDNIKR;EAEDS(0.906)DS(0.094)DDNIKR ; 120.63 5.07E-05 1069070000 555870 567660 472360 823590 764570 661160 859780 838950 532540 1022930 TRUE FALSE FALSE 679521.3638 634042.899 647105.6205 868580.6363 688446.7262 695777.3153 676080.9792 633196.1971 639415.8933 767932.3766 0.884871356 0.825649391 0.842659641 1.131063962 0.896493946 0.906039824 0.880391295 0.824546817 0.832646093 1 19.55061975 -9.54002925 14.73700258 0.999997634 0.893527407 0.126961304 0.085144742 0 0 0.087267788 0.021165547 2.88E-10 9.54002925 -0.106470227 EAEDS(ph)DSDDNIKR ddPTM_HeLa_A486_30min_R1 2 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 0 EAEDS(0.693)DS(0.307)DDNIKR;EAEDS(0.939)DS(0.061)DDNIKR ; 205.68 7.29E-22 1030910000 916360 927450 461030 479930 835390 1053840 1297720 1165350 746620 1511170 TRUE FALSE FALSE 852127.8961 853955.4843 639553.1628 1117301.294 730607.5965 923827.9355 973016.7301 900025.2444 811337.6227 1132763.196 0.752255987 0.753869377 0.564595641 0.986350279 0.644978226 0.81555257 0.858976292 0.794539625 0.716246454 1 20.11141487 -14 0.185765451 1.958952779 0.723343305 0.295854072 0.108789058 170.882385 1.660691469 60.7584071 0.30369567 1.00E-14 14 -1.235609474 EAEEEPLVPEMSHDTEMNNYRR ddPTM_HeLa_A485_30min_R1 1 EAEEEPLVPEMSHDTEMNNYRR 22 1 H0YMB8;Q8N5R6-6;Q8N5R6;Q8N5R6-2 H0YMB8 CCDC33 Coiled-coil domain-containing protein 33 0 0 42.711 0.035224 1349600000 437120 638960 696810 89183 936840 656930 563030 744130 644900 217230 FALSE FALSE TRUE 534355.836 713680.8138 954589.0157 94054.84147 843564.9202 691325.839 442734.041 561630.9507 774325.5146 163078.5588 3.276677448 4.376300716 5.853553174 0.576745601 5.17275187 4.239219699 2.714851322 3.443928833 4.748174869 1 17.31520759 -10.634147 2.915484547 0.758876157 3.811292997 0.268905379 1.396056985 24846966.33 24226476.43 45100235.81 0.344518363 2.32E-11 10.634147 3.05241684 EAEEGEDDRDS(ph)ANGEDDS ddPTM_HeLa_A485_30min_R1 12 EAEEGEDDRDSANGEDDS 18 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;P07910-3;G3V2D6 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.991)ANGEDDS(0.009);EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.983)ANGEDDS(0.017);EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.984)ANGEDDS(0.016);EAEEGEDDRDS(0.997)ANGEDDS(0.003) ;;;;;;;;;;; 247.73 1.33E-44 18811050000 5309917 7977940 4273450 4206918 3670065 5252673 5136142 5515214 3538294 4766128 TRUE FALSE FALSE 6491089.718 8910890.684 5854376.988 4436731.278 3304660.442 5527694.836 4038763.303 4162599.119 4248397.151 3578020.004 1.814156911 2.490453009 1.636205774 1.239996219 0.923600326 1.544903279 1.128770465 1.163380617 1.18735981 1 21.77073002 -5.033909451 3.324269666 1.183154971 2.151037671 0.759254854 0.220690913 0.103486256 2.335401966 0.058006122 0.120276323 9.25E-06 5.033909451 0.9678827 EAEEGEDDRDS(ph)ANGEDDS ddPTM_HeLa_A486_30min_R1 11 EAEEGEDDRDSANGEDDS 18 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;P07910-3;G3V2D6 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.929)ANGEDDS(0.071);EAEEGEDDRDS(0.982)ANGEDDS(0.018);EAEEGEDDRDS(0.962)ANGEDDS(0.038);EAEEGEDDRDS(0.997)ANGEDDS(0.003);EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.999)ANGEDDS(0.001);EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(1)ANGEDDS ;;;;;;;;;; 264.37 6.34E-57 12942559000 5916848 5406183 2849353.6 1182380.4 2995981.2 3847380 3712257 3479910.4 3981099 5782351 TRUE FALSE FALSE 5502107.51 4977777.37 3952699.622 2752641.325 2620197.301 3372729.373 2783411.034 2687610.768 4326183.867 4334412.673 1.269400937 1.148431805 0.911934308 0.63506674 0.604510345 0.778128348 0.642165674 0.620063425 0.998101518 1 22.04740509 -4.832562491 2.419512974 0.729084892 1.245521493 0.621227482 0.140310576 0.171786064 1.986457233 0.037656259 0.113052543 1.47E-05 4.832562491 0.516436601 EAEEGPTGASESQDS(ph)PR ddPTM_HeLa_A485_30min_R1 2 EAEEGPTGASESQDSPR 17 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 EAEEGPTGASESQDS(1)PR;EAEEGPTGASESQDS(1)PR ; 419.91 2.07E-172 988440000 305000 393270 355010 294570 415160 344300 425060 443980 334970 435880 TRUE FALSE FALSE 372846.1978 439259.5055 486342.9722 310661.6132 373825.2127 362327.0156 334242.4586 335093.2089 402195.4065 327223.1378 1.139424921 1.342385225 1.486273176 0.949387673 1.142416808 1.107278104 1.021451175 1.024051084 1.229116649 1 18.31991524 -5.266907498 24.97949113 1.07151257 1.32466352 0.539077091 0.108017603 336.1911603 1535790.808 0.029971705 0.045945038 5.41E-06 5.266907498 0.253150951 EAEEGPTGASESQDS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EAEEGPTGASESQDSPR 17 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 EAEEGPTGASESQDS(1)PR;EAEEGPTGASESQDS(1)PR ; 424.6 1.52E-172 761170000 470600 461340 379030 127892 496170 386340 466860 480060 375260 444280 TRUE FALSE FALSE 437613.3702 424781.7382 525800.5668 297739.0393 433935.732 338677.2988 350046.6901 370760.8176 407787.8389 333029.3962 1.314038266 1.275508238 1.578841306 0.894032307 1.302995282 1.016959171 1.051098474 1.11329757 1.224480012 1 18.34529 -5.261349273 24.99999998 1.095539125 1.378067159 0.526616633 0.131449622 6.579128768 1825147.524 0.034925067 0.055938723 5.48E-06 5.261349273 0.282528034 EAEHLSSPWGESS(ph)PEELR ddPTM_HeLa_A485_30min_R1 1 EAEHLSSPWGESSPEELR 18 0 Q6PJI9-4;Q6PJI9-3;Q6PJI9;H3BNY4 Q6PJI9-4 WDR59 WD repeat-containing protein 59 1 0 EAEHLSSPWGES(0.172)S(0.828)PEELR 83.404 0.0013561 101990000 38236 60284 58044 18186 58531 52849 45941 50721 59369 26684 TRUE FALSE FALSE 46741.46629 67333.6894 79516.89101 19179.45513 52703.44813 55616.09192 36125.33005 38281.59522 71283.81374 20032.16988 2.333320183 3.361277874 3.969459698 0.957432732 2.630940554 2.776338871 1.803365799 1.911005919 3.558466914 1 14.29003108 -10.19849686 0.176691993 1.78E-22 3.057791738 0.203444765 0.872447585 43.27249358 1.52142045 28.96226614 3.756543896 6.33E-11 10.19849686 3.057791738 EAELLT(ph)SAEKR ddPTM_HeLa_A486_30min_R1 1 EAELLTSAEKR 11 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 EAELLT(0.637)S(0.363)AEKR 62.042 0.022407 229480000 133820 175600 109010 82007 203800 184190 238480 221730 137200 223620 TRUE FALSE FALSE 124439.909 161684.8165 151221.5914 190916.4404 178237.5036 161466.5105 178809.7816 171246.9193 149092.6065 167624.0965 0.742374824 0.964567863 0.902147093 1.138955821 1.063316715 0.963265508 1.066730771 1.021612781 0.889446145 1 17.35487003 -3.889758945 1.252953575 1.017406212 0.370453951 0.557513174 0.07067417 2.41342891 1.759653076 0.02096721 2.515052395 0.000128896 3.889758945 -0.646952261 EAELLTS(ph)AEKR ddPTM_HeLa_A485_30min_R1 2 EAELLTSAEKR 11 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 EAELLT(0.042)S(0.958)AEKR;EAELLT(0.006)S(0.994)AEKR ; 108.97 0.00035356 485530000 194755 182872 136182 264070 278550 218670 313870 307920 182677 344110 TRUE FALSE FALSE 238077.5779 204257.2896 186561.3888 278495.4754 250816.584 230119.2231 246809.1104 232402.1372 219338.5983 258329.7099 0.921603551 0.79068447 0.722183248 1.078062123 0.970916524 0.890796584 0.955403506 0.899633795 0.849064548 1 17.97885405 -5.248691437 24.99060154 0.943682573 0.809409836 0.412495963 0.075063269 815.2931967 1598268.171 0.020974358 0.036024255 5.64E-06 5.248691437 -0.134272737 EAELLTS(ph)AEKR ddPTM_HeLa_A486_30min_R1 3 EAELLTSAEKR 11 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 EAELLT(0.044)S(0.956)AEKR;EAELLT(0.008)S(0.992)AEKR;EAELLT(0.311)S(0.689)AEKR ;; 126.09 3.46E-05 895950000 486740 511970 316237 226674 586890 560050 673300 641530 396837 652080 TRUE FALSE FALSE 452622.0395 471399.6326 438692.4355 527708.5275 513276.7837 490956.7252 504833.2186 495467.6235 431235.1507 488794.9237 0.925995786 0.964411883 0.897497937 1.079611309 1.050086158 1.004422717 1.03281191 1.013651328 0.882241467 1 18.89886978 -5.246435025 24.993042 1.012060285 0.93281287 0.338992659 0.050784936 965.9550641 1609007.857 0.014091714 0.024270357 5.67E-06 5.246435025 -0.079247415 EAENQGLDISS(ph)PGMSGHR ddPTM_HeLa_A485_30min_R1 1 EAENQGLDISSPGMSGHR 18 0 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 0 EAENQGLDIS(0.033)S(0.966)PGMS(0.001)GHR 120.64 2.26E-05 492640000 139600 179610 152120 102420 202750 167610 181940 212700 172230 227260 TRUE FALSE FALSE 170653.5384 200613.8271 208395.5182 108014.9453 182563.4981 176385.8004 143067.0327 160534.9915 206794.9812 170608.2644 1.000265368 1.175874028 1.221485483 0.633116723 1.070074177 1.033864338 0.838570354 0.940956712 1.212104126 1 17.38032801 EAENQGLDISS(ph)PGMSGHR ddPTM_HeLa_A486_30min_R1 2 EAENQGLDISSPGMSGHR 18 0 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 0 EAENQGLDIS(0.048)S(0.948)PGMS(0.004)GHR;EAENQGLDIS(0.031)S(0.967)PGMS(0.002)GHR ; 128.12 7.43E-06 888300000 358509 420850 372440 50149 533310 337926 326740 374270 381664 296775 TRUE FALSE FALSE 333379.3704 387500.3133 516658.7423 116749.4064 466417.2869 296236.1259 244986.1961 289056.8913 414746.9428 222460.6083 1.498599563 1.741882827 2.322472937 0.524809346 2.096628659 1.331634073 1.101256523 1.299362136 1.864361273 1 17.76319037 -5.230383023 24.99946474 1.353459499 1.843074688 0.225437381 0.452841183 1110.981135 894306.3715 0.118586674 0.205373443 5.88E-06 5.230383023 0.489615189 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK ddPTM_HeLa_A485_30min_R1 1 EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK 32 0 Q3ZCM7;A0A075B736;Q5SQY0 Q3ZCM7 TUBB8 Tubulin beta-8 chain 0 0 382.8 2.30E-194 45380000 12154 12558 12753 13773 19490 14687 22326 24064 15721 21793 FALSE FALSE TRUE 14857.61537 14026.54886 17470.8654 14525.38411 17549.50717 15455.98861 17555.86771 18162.26627 18876.0605 16360.40617 0.908144652 0.857347227 1.067874796 0.887837622 1.07268163 0.944719125 1.073070407 1.110135414 1.153764784 1 13.99792095 -5.805146276 0.575793844 1.095276042 0.890034516 0.414526414 0.07452177 0.966576995 0.66666203 0.054585242 0.104522617 1.57E-06 5.805146276 -0.205241527 EAFAQRPSS(ph)APDLMCLSPDR ddPTM_HeLa_A485_30min_R1 3 EAFAQRPSSAPDLMCLSPDR 20 1 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 EAFAQRPS(0.249)S(0.751)APDLMCLSPDR;EAFAQRPS(0.032)S(0.968)APDLMCLSPDR;EAFAQRPS(0.396)S(0.604)APDLMCLSPDR ;; 177.3 9.40E-15 372963000 126509 154983 161246 177290 206872 163784 203818 209905 171175 212047 TRUE FALSE FALSE 154650.4906 173106.9137 220897.6054 186974.9038 186275.0973 172359.477 160270.6193 158425.4696 205528.2524 159187.5853 0.971498439 1.087439786 1.387655984 1.17455707 1.170160958 1.082744465 1.006803507 0.995212468 1.291107293 1 17.2803683 -6.294040952 5.117716735 1.069657125 1.16822683 0.096269888 0.125250626 0.464124645 33.16860635 0.046044396 0.04153008 5.08E-07 6.294040952 0.098569706 EAFAQRPSS(ph)APDLMCLSPDR ddPTM_HeLa_A486_30min_R1 1 EAFAQRPSSAPDLMCLSPDR 20 1 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 EAFAQRPS(0.319)S(0.681)APDLMCLSPDR 146.65 9.29E-10 130510000 40478 38823 41145 40875 55420 56851 60579 66307 45283 62472 TRUE FALSE FALSE 37640.70123 35746.52409 57077.4459 95159.06571 48468.70683 49837.30164 45421.49346 51210.34357 49208.1669 46828.60458 0.8037972 0.763348052 1.218858568 2.03207135 1.035023513 1.064249129 0.969951889 1.093569711 1.050814291 1 15.51510243 EAFAQRPSSAPDLMCLS(ph)PDRK ddPTM_HeLa_A486_30min_R1 1 EAFAQRPSSAPDLMCLSPDRK 21 2 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 EAFAQRPSSAPDLMCLS(1)PDRK 100.7 0.00017139 82427000 58299 68994 45279 50210 76230 87814 95139 90363 67519 115350 TRUE FALSE FALSE 54212.54116 63526.66417 62812.24141 116891.4175 66668.52258 76980.40151 71334.21592 69789.31751 73371.60128 86465.6092 0.626983857 0.734704407 0.7264419 1.351883351 0.771040917 0.890300805 0.825001022 0.807133821 0.848563978 1 16.39983881 -5.030416263 24.99724084 0.917445128 0.693276064 0.311977756 0.157890138 835.6588965 686776.0331 0.043342395 0.075201928 9.32E-06 5.030416263 -0.224169065 EAFEQPQT(ph)SSTPPRDLDSK ddPTM_HeLa_A485_30min_R1 1 EAFEQPQTSSTPPRDLDSK 19 1 A0A0A0MRF7;K7EIW3;P52564 A0A0A0MRF7 MAP2K6 Dual specificity mitogen-activated protein kinase kinase 6 1 0 EAFEQPQT(0.323)S(0.226)S(0.226)T(0.226)PPRDLDSK 108.25 7.50E-05 497810000 169680 192000 152040 244510 261550 198640 290520 322980 157800 327030 TRUE FALSE FALSE 207424.7306 214452.7298 208285.9229 257866.9622 235509.1636 209040.4832 228448.0287 243768.6486 189469.0126 245507.4395 0.84488165 0.873508071 0.848389455 1.050342762 0.959275059 0.851462928 0.93051367 0.992917563 0.771744485 1 17.90540722 EAFNMIDQNR ddPTM_HeLa_A486_30min_R1 1 EAFNMIDQNR 10 0 J3QRS3;P19105;O14950;J3KTJ1;P24844;P24844-2 J3QRS3 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 0 0 113.66 0.00015768 0 125430 140460 113340 74608 156490 149740 176180 171480 121780 169160 FALSE FALSE TRUE 116638.0047 129329.4381 157228.2834 173691.1945 136861.565 131266.6012 132097.9006 132437.7474 132335.9885 126801.235 0.919849123 1.019938316 1.239958612 1.369791032 1.07933937 1.03521548 1.041771404 1.044451558 1.04364905 1 16.95220927 -5.991067162 24.99771381 1.038668874 1.147352389 0.156331086 0.112969916 408.9044458 1144273.122 0.038919698 0.044068102 1.02E-06 5.991067162 0.108683514 EAFQLFDR ddPTM_HeLa_A485_30min_R1 2 EAFQLFDR 8 0 G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2 G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 0 ; ; 134.77 0.0016803 29315000 53031 80376 72146 53130 83843 71621 80945 86862 68383 72288 FALSE FALSE TRUE 64827.563 89775.27402 98835.80765 56032.35737 75495.29653 75370.96481 63650.43949 65558.95831 82106.84085 54267.93196 1.194583258 1.654296944 1.821256202 1.032513224 1.391158531 1.38886746 1.172892299 1.208060745 1.512990046 1 15.72781231 -5.264366756 24.99455611 1.261684421 1.566470609 0.316427285 0.209470941 310.1158024 2647842.368 0.05748936 0.089675706 5.44E-06 5.264366756 0.304786188 EAFSLFDKDGDGTITTK ddPTM_HeLa_A486_30min_R1 1 EAFSLFDKDGDGTITTK 17 1 P0DP25;P0DP24;P0DP23;E7EMB3;F8WBR5;M0QZ52;G3V479 P0DP25 CALM2;CALM3;CALM1 0 0 149.73 6.60E-08 270240000 261870 234460 128390 134260 295550 291230 330400 332310 196660 369430 FALSE FALSE TRUE 243514.2653 215880.5357 178106.0464 312564.0651 258479.3631 255301.0036 247730.4254 256650.2673 213706.6471 276922.3234 0.879359462 0.779570722 0.643162473 1.12870664 0.93340024 0.921922799 0.894584526 0.926795154 0.771720548 1 18.07912183 -5.245813576 24.9991509 0.93367053 0.768584888 0.386440071 0.099248205 909.2477031 1454669.867 0.027129118 0.046779018 5.68E-06 5.245813576 -0.165085642 EAGAGGLAIAVEGPSK ddPTM_HeLa_A485_30min_R1 2 EAGAGGLAIAVEGPSK 16 0 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 ; ; 264.22 1.03E-42 97064000 145982 168107 139510 184880 184129 182509 223272 219255 165457 253240 FALSE FALSE TRUE 178455.1923 187765.6513 191120.5545 194979.5263 165796.4702 192064.889 175568.1132 165482.3675 198662.7022 190111.9285 0.938684877 0.987658443 1.005305432 1.025603852 0.87209925 1.010272688 0.92349867 0.870447051 1.044977576 1 17.53648953 EAGELPT(ph)SPLHLLS(ph)PGTPR ddPTM_HeLa_A486_30min_R1 2 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 2 0 EAGELPT(0.5)S(0.5)PLHLLS(0.988)PGT(0.012)PR;EAGELPT(0.5)S(0.5)PLHLLS(0.995)PGT(0.005)PR ; 105.61 0.00011838 33145000 55304 62932 48933 17949.1 48587 50583 53833 52620 49059 59984 TRUE FALSE FALSE 51427.47519 57945.03913 67881.16807 41786.4119 42492.7654 44342.58375 40363.41401 40639.57469 53311.47362 44963.61597 1.143757549 1.288709502 1.509691038 0.929338333 0.945047779 0.986188117 0.897690569 0.903832439 1.185658059 1 15.45647044 -5.278813997 24.95469727 0.969834349 1.311518381 0.649504237 0.112919859 457.0026709 656379.6813 0.031859975 0.047377597 5.26E-06 5.278813997 0.341684033 EAGELPTS(ph)PLHLLSPGT(ph)PR ddPTM_HeLa_A485_30min_R1 2 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 2 0 EAGELPT(0.244)S(0.756)PLHLLS(0.188)PGT(0.812)PR;EAGELPT(0.466)S(0.534)PLHLLS(0.077)PGT(0.923)PR ; 114.01 6.59E-05 69998000 88808 118239 101167 73708 88651 92223 94447 102259 85433 100140 TRUE FALSE FALSE 108563.0332 132066.0225 138592.8832 77734.4814 79824.59517 97051.65368 74267.62689 77179.81991 102578.6195 75176.94094 1.44410017 1.756735787 1.84355577 1.034020278 1.06182287 1.290976361 0.987904349 1.026642198 1.364495791 1 16.19800259 -5.26612942 24.9995446 1.111038791 1.688991107 0.750796887 0.151009188 181.3053961 966421.315 0.041865989 0.064484572 5.42E-06 5.26612942 0.577952316 EAGELPTS(ph)PLHLLSPGTPR ddPTM_HeLa_A485_30min_R1 5 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 EAGELPT(0.198)S(0.802)PLHLLSPGTPR;EAGELPT(0.204)S(0.796)PLHLLSPGTPR;EAGELPT(0.003)S(0.997)PLHLLSPGTPR;EAGELPT(0.005)S(0.995)PLHLLSPGTPR;EAGELPT(0.19)S(0.81)PLHLLSPGTPR ;;;; 215.65 1.10E-34 683379000 665805 972966 766547 570203 685057 724778 789019 779499 682246 783656 TRUE FALSE FALSE 813911.0252 1086745.91 1050124.634 601351.7461 616850.3197 762726.2554 620438.645 588325.648 819166.5143 588304.9813 1.383484844 1.847249207 1.785000412 1.022176873 1.048521327 1.296481042 1.054620757 1.000035129 1.392418117 1 19.16620473 -5.261396655 25 1.118434074 1.689445281 0.697525839 0.16753597 2.00586206 1173332.622 0.045353632 0.072538108 5.48E-06 5.261396655 0.571011208 EAGELPTS(ph)PLHLLSPGTPR ddPTM_HeLa_A486_30min_R1 6 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 EAGELPT(0.161)S(0.839)PLHLLSPGTPR;EAGELPT(0.031)S(0.969)PLHLLSPGTPR;EAGELPT(0.019)S(0.981)PLHLLSPGTPR;EAGELPT(0.056)S(0.944)PLHLLSPGTPR;EAGELPT(0.205)S(0.795)PLHLLSPGTPR;EAGELPT(0.15)S(0.792)PLHLLS(0.052)PGT(0.007)PR ;;;;; 195.09 4.07E-19 751567000 808072 850358 591236 125129.5 620684 652836 644638 607836 683956 734529 TRUE FALSE FALSE 751430.3257 782972.5351 820178.413 291307.7997 542832.0251 572295.7319 483342.7541 469445.0118 743241.8568 550598.1574 1.364752707 1.422039875 1.489613436 0.529075144 0.985895099 1.039407278 0.877850294 0.852609122 1.349880756 1 19.07064026 -5.22917394 24.9410856 0.944163065 1.425125924 0.563257787 0.192724764 461.9134406 357057.1201 0.051412126 0.08903965 5.90E-06 5.22917394 0.480962859 EAGELPTSPLHLLSPGT(ph)PR ddPTM_HeLa_A485_30min_R1 1 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 EAGELPTSPLHLLS(0.39)PGT(0.61)PR 78.837 0.003707 54306000 46827 76020 61080 27083 60304 55941 54850 65921 45335 47242 TRUE FALSE FALSE 57243.5046 84909.87771 83676.03375 28562.47571 54299.92202 58869.98426 43130.84942 49753.77139 54433.31866 35465.43882 1.614064467 2.394158384 2.359368346 0.805360843 1.531065844 1.659925443 1.21613748 1.402880467 1.534827158 1 15.11412618 -5.246358793 24.995152 1.344191692 2.149693245 0.582978727 0.314678546 572.2056448 948394.6797 0.084035165 0.144815528 5.67E-06 5.246358793 0.805501553 EAGENAPVLS(ph)DDELVSMSVR ddPTM_HeLa_A485_30min_R1 2 EAGENAPVLSDDELVSMSVR 20 0 O60675 O60675 MAFK Transcription factor MafK 1 0 EAGENAPVLS(1)DDELVSMSVR;EAGENAPVLS(1)DDELVSMSVR ; 235.25 5.16E-46 60691000 79671 100584 93615 82394 139579 107773 117953 149925 96415 106332 TRUE FALSE FALSE 97393.53909 112346.4238 128247.0841 86894.97559 125682.0247 113415.8276 92751.37796 113155.6587 115764.6061 79825.3893 1.220082231 1.407402141 1.606595161 1.08856313 1.574461782 1.420798929 1.161928288 1.417539704 1.450222882 1 16.28456006 -10.33186291 3.770618 0.998870736 1.374119761 0.32763531 0.159825138 19390150.32 17712015.19 159677.7419 0.037324509 4.66E-11 10.33186291 0.375249026 EAGENAPVLS(ph)DDELVSMSVR ddPTM_HeLa_A486_30min_R1 2 EAGENAPVLSDDELVSMSVR 20 0 O60675 O60675 MAFK Transcription factor MafK 1 0 EAGENAPVLS(1)DDELVSMSVR;EAGENAPVLS(1)DDELVSMSVR ; 330.04 5.28E-114 163870000 82873 101749 91307 42058 113608 91602 113738 110777 92446 99744 TRUE FALSE FALSE 77064.03066 93686.03868 126663.5157 97913.14949 99358.22529 80301.07658 85279.5494 85555.49534 100459.2937 74767.45318 1.030716273 1.253032365 1.694099642 1.309569142 1.328896747 1.074011126 1.140597222 1.144287945 1.343623321 1 16.19012277 -6.237579759 17.75202851 1.149528312 1.339203902 0.216930257 0.171862522 34.05398884 25335.27366 0.059089046 0.058943322 5.79E-07 6.237579759 0.18967559 EAGS(ph)PAQEFK ddPTM_HeLa_A486_30min_R1 1 EAGSPAQEFK 10 0 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 EAGS(1)PAQEFK 72.272 0.012562 828980000 974440 951870 503450 403340 878230 1046900 1194600 1272400 750570 1321400 TRUE FALSE FALSE 906136.788 876440.3545 698399.3229 938995.9037 768074.2042 917744.1221 895698.4448 982702.2963 815630.0119 990512.8391 0.914815793 0.884834926 0.705088612 0.947989634 0.775430841 0.926534302 0.904277471 0.992114648 0.82344214 1 19.91781615 -6.349702731 13.19026787 0.927271818 0.845694246 0.219046239 0.078920669 2.022192117 298.6317897 0.026610905 0.023466062 4.47E-07 6.349702731 -0.081577572 EAHEREMAEQFR ddPTM_HeLa_A485_30min_R1 1 EAHEREMAEQFR 12 1 B3KT28;Q9UNN5;B1ANM7;Q9UNN5-2 B3KT28 FAF1 FAS-associated factor 1 0 0 75.819 0.011241 5333300000 721010 902740 980520 708260 1252300 684010 958800 769840 1009400 1081800 FALSE FALSE TRUE 881396.187 1008307.59 1343255.151 746950.4504 1127616.615 719823.7059 753944.5473 581035.5329 1211977.321 812127.1691 1.085293314 1.241563672 1.653996076 0.919745674 1.388472961 0.886343584 0.928357745 0.715448953 1.492349188 1 19.63134613 -6.265559302 24.90967031 0.981956568 1.260140029 0.192480349 0.257341002 537.7057886 3251037.706 0.086759526 0.079280734 5.43E-07 6.265559302 0.278183461 EAIEMHENGS(ph)TK ddPTM_HeLa_A485_30min_R1 1 EAIEMHENGSTK 12 0 H7C4K2;H7C4M4;Q9ULI3 H7C4K2 HEG1 Protein HEG homolog 1 1 0 EAIEMHENGS(0.974)T(0.026)K 102.38 0.00049355 0 359210 297280 148160 517710 250260 330220 480680 432390 254520 855410 TRUE FALSE FALSE 439115.0252 332044.31 202970.5495 545991.1864 225343.2357 347509.8086 377978.7912 326345.6745 305599.8294 642172.0297 0.683796561 0.517064423 0.31606881 0.850225736 0.350907896 0.541147531 0.588594292 0.508190422 0.475884678 1 19.2926003 -10.76743308 2.681473679 1.110718479 0.534348239 0.477931946 0.145189353 30309624.25 23022413.87 22092915.69 0.035206962 1.71E-11 10.76743308 -0.57637024 EAIGAVIHYLLQVGSEK ddPTM_HeLa_A486_30min_R1 1 EAIGAVIHYLLQVGSEK 17 0 Q9UBB6-2;Q9UBB6;Q9UBB6-3 Q9UBB6-2 NCDN Neurochondrin 0 0 104.45 0.00024674 1651600 4510 5755.6 3258.1 2844.2 4967.3 5540.5 5952.6 5928.9 4957.6 5374.6 FALSE FALSE TRUE 4193.87229 5299.505294 4519.723575 6621.441338 4344.254916 4856.969442 4463.19652 4579.018897 5387.32876 4028.765177 1.040982064 1.315416774 1.121863245 1.643541146 1.078309289 1.205572732 1.107832381 1.136581234 1.337215877 1 11.976122 EAILAIHK ddPTM_HeLa_A485_30min_R1 4 EAILAIHK 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ;;; ;;; 106.04 0.0034816 750709000 932590 1058290 902780 1008630 1315490 1158350 1401860 1576140 1037260 1385180 FALSE FALSE TRUE 1140041.428 1182047.81 1236755.89 1063728.903 1184515.197 1218999.415 1102341.159 1189589.194 1245428.568 1039880.118 1.096320055 1.136715462 1.18932545 1.022934167 1.139088223 1.172249948 1.060065617 1.143967629 1.197665525 1 19.98798579 -10.32299684 3.343153657 0.999312565 1.127627727 0.349816677 0.052620831 11045733.73 18009158.09 78061.59571 0.012935727 4.75E-11 10.32299684 0.128315162 EAILAIHK ddPTM_HeLa_A486_30min_R1 2 EAILAIHK 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 96.253 0.0079956 149512000 381550 409890 272560 132176 447110 390550 439770 438100 330500 447110 FALSE FALSE TRUE 354805.3153 377408.8236 378102.5314 307712.4078 391029.2947 342367.9118 329734.8946 338354.1937 359148.0061 335150.7458 1.058643968 1.126086778 1.128156617 0.918131353 1.166726614 1.021534089 0.983840552 1.00955823 1.071601393 1 18.35445062 -5.409878336 0.688989633 1.019559303 1.10741543 0.137289839 0.067460637 2.029479218 1.78513296 0.038088331 0.112876234 3.89E-06 5.409878336 0.087856127 EAKS(ph)PVKEEAK ddPTM_HeLa_A485_30min_R1 1 EAKSPVKEEAK 11 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 EAKS(1)PVKEEAK 89.541 0.0012779 249660000 1228200 631510 297350 2941000 704570 939690 1960900 1751100 662720 3878000 TRUE FALSE FALSE 1501408.853 705359.6011 407352.1388 3101659.383 634420.5369 988890.7154 1541937.696 1321639.979 795721.8252 2911285.969 0.515720155 0.242284547 0.139921719 1.06539152 0.217917629 0.339674881 0.529641441 0.453971198 0.273323141 1 21.47322513 -10.53698229 2.928673758 1.025430359 0.421245341 0.329083978 0.248539196 72811729.94 79345168.69 14673253.96 0.060903082 2.90E-11 10.53698229 -0.604185017 EAKS(ph)PVKEEAK ddPTM_HeLa_A486_30min_R1 2 EAKSPVKEEAK 11 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 EAKS(1)PVKEEAK;EAKS(1)PVKEEAK ; 81.448 0.0027854 313517000 817890 395633 188628 815510 323582 1339380 1410440 965990 539912 2071780 TRUE FALSE FALSE 760560.1346 364281.6002 261669.8132 1898548.494 282995.3283 1174140.913 1057532.994 746055.1644 586712.0069 1552992.803 0.489738351 0.234567475 0.168493899 1.222509525 0.182225782 0.756050454 0.680964517 0.48039834 0.377794415 1 20.56661971 -14 0.163669407 2.688131062 0.399833967 0.181897413 0.304310966 241.5133651 2.240832111 134.5563237 1.219747577 1.00E-14 14 -2.288297095 EALAEAALES(ph)PRPALVR ddPTM_HeLa_A485_30min_R1 9 EALAEAALESPRPALVR 17 1 O14745;O14745-2;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR ;;;;;;;; 294.88 1.06E-68 41211386000 2555985 3422947 3467560 2673549.6 4212658 3365733 3917724 4180279 3002900 3827131 TRUE FALSE FALSE 3124555.045 3823230.876 4750354.741 2819598.845 3793230.978 3541957.575 3080670.263 3155059.021 3605554.486 2873097.675 1.087521344 1.33069993 1.653391314 0.98137939 1.320258274 1.232800961 1.072246965 1.098138448 1.254936272 1 21.45417561 -6.258515852 0.926080969 1.109654467 1.312229703 0.158142245 0.176071392 1.075257014 1.972588322 0.107706492 0.099386473 5.51E-07 6.258515852 0.202575236 EALAEAALES(ph)PRPALVR ddPTM_HeLa_A486_30min_R1 9 EALAEAALESPRPALVR 17 1 O14745;O14745-2;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR ;;;;;;;; 262.91 5.26E-52 40846352000 4260440 5025607 4261252 1660473 5905031 4772894 4968230 5332140 4168984 5226792 TRUE FALSE FALSE 3961805.157 4627359.598 5911322.895 3865665.06 5164366.95 4184062.866 3725126.305 4118128.122 4530354.89 3917969.262 1.011188422 1.18106072 1.508772147 0.986650175 1.318123396 1.067916205 0.95077987 1.051087399 1.156301795 1 21.90167465 -6.4319123 7.74631185 1.038992893 1.204790926 0.222721467 0.146324825 0.45008108 34.15463186 0.051438944 0.045231587 3.70E-07 6.4319123 0.165798034 EALASLPS(ph)SPGLLQSLLER ddPTM_HeLa_A485_30min_R1 1 EALASLPSSPGLLQSLLER 19 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 EALASLPS(0.5)S(0.5)PGLLQS(0.001)LLER 106.36 7.07E-05 71579000 53025 67298 67028 54164 75831 66409 84186 89950 60786 73956 TRUE FALSE FALSE 64820.22832 75167.91569 91824.44647 57122.84217 68280.99938 69886.07255 66198.97336 67889.62146 72985.19264 55520.13026 1.167508578 1.353885795 1.653894651 1.028867222 1.229842204 1.258751956 1.192341824 1.222792907 1.314571711 1 15.76072333 -13.99999999 0.136421842 0.097858015 1.371313296 0.218746622 0.153155564 221.7944462 1.871277822 54.72418938 1.044274618 1.00E-14 13.99999999 1.273455281 EALASLPSS(ph)PGLLQSLLER ddPTM_HeLa_A485_30min_R1 1 EALASLPSSPGLLQSLLER 19 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 EALASLPS(0.008)S(0.992)PGLLQSLLER 218.11 1.30E-34 66746000 111070 149510 151730 118120 174540 141800 171820 188710 138060 160240 TRUE FALSE FALSE 135777.1383 166993.8939 207861.241 124572.5965 157162.1848 149224.4287 135109.2534 142428.5766 165767.3756 120295.117 1.12870033 1.388201767 1.727927502 1.035558214 1.306471856 1.240486168 1.123148277 1.183993001 1.378005856 1 16.87621856 -5.292992005 24.99771786 1.194045411 1.412269384 0.276630992 0.172385614 893.9067121 708200.0788 0.048231988 0.071547265 5.09E-06 5.292992005 0.218223974 EALASLPSS(ph)PGLLQSLLER ddPTM_HeLa_A486_30min_R1 1 EALASLPSSPGLLQSLLER 19 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 EALASLPS(0.006)S(0.994)PGLLQSLLER 148.41 1.78E-08 69112000 118520 122880 109050 45882 137960 111600 129630 132250 113080 130400 TRUE FALSE FALSE 110212.36 113142.5413 151277.0805 106815.6147 120655.7704 97831.92667 97195.20291 102139.562 122881.8654 97746.99124 1.12752688 1.157504081 1.547639253 1.092776498 1.234368126 1.000868931 0.994354933 1.044938168 1.257142178 1 16.57676467 -5.984473294 2.07790298 1.060906222 1.254471416 0.263590425 0.1384698 0.441390232 3.84456011 0.050923708 0.056397104 1.04E-06 5.984473294 0.193565193 EALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_HeLa_A485_30min_R1 5 EALGLGPPAAQLTPPPAPVGLR 22 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR ;;;; 167.16 3.31E-13 780842000 329425 390587 374690 324648 404826 298049 388447 346475 302285 400130 TRUE FALSE FALSE 402704.4547 436262.752 513303.4232 342382.6982 364520.102 313654.3848 305452.1251 261501.463 362950.8268 300384.9548 1.340627912 1.452345548 1.708818684 1.139813072 1.213509852 1.044174749 1.016868922 0.870554463 1.208285638 1 18.19645303 -5.414232734 5.251304762 1.059519352 1.49410866 0.710767395 0.126420998 0.125314619 5.03369055 0.037331628 0.055744846 3.85E-06 5.414232734 0.434589308 EALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_HeLa_A486_30min_R1 3 EALGLGPPAAQLTPPPAPVGLR 22 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR ;; 102.37 0.0019661 677612000 351890 395000 294134 115402 386150 330000 371720 367700 288581 381930 TRUE FALSE FALSE 327224.3282 363698.7614 408030.562 268661.6881 337715.4663 289287.9552 278711.7243 283982.7368 313595.4334 286292.2421 1.142973089 1.270375889 1.425223957 0.938417633 1.179617945 1.010463829 0.973521749 0.99193305 1.095368254 1 18.12712905 -5.269243018 24.99964677 1.030145997 1.278609472 0.623089687 0.089963028 377.2846422 1208664.583 0.025325751 0.038356197 5.38E-06 5.269243018 0.248463475 EALGLGPPAAQLT(ph)PPPAPVGLRGS(ph)GLR ddPTM_HeLa_A485_30min_R1 1 EALGLGPPAAQLTPPPAPVGLRGSGLR 27 1 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 2 0 EALGLGPPAAQLT(1)PPPAPVGLRGS(1)GLR 66.461 0.010962 84330000 21846 27928 19348 18242 31523 19599 30922 26196 14647 30120 TRUE FALSE FALSE 26705.56733 31193.93666 26505.63034 19238.51427 28384.45944 20625.17333 24315.26209 19771.38993 17586.51855 22611.63832 1.181054064 1.379552256 1.172211848 0.850823545 1.255303089 0.91214856 1.075342784 0.874389978 0.777764013 1 14.46477791 -5.244215763 0.504652033 0.896530835 1.373024749 0.444793611 0.139317233 1.705664641 0.657081425 0.103805444 0.436599046 5.70E-06 5.244215763 0.476493914 EALGLGPPAAQLT(ph)PPPAPVGLRGS(ph)GLR ddPTM_HeLa_A486_30min_R1 2 EALGLGPPAAQLTPPPAPVGLRGSGLR 27 1 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 2 0 EALGLGPPAAQLT(1)PPPAPVGLRGS(1)GLR;EALGLGPPAAQLT(1)PPPAPVGLRGS(1)GLR ; 66.097 0.011479 120624000 96516 93034 74185 34495 103636 94752 99072 99265 74764 105596 TRUE FALSE FALSE 89750.72681 85661.64702 102911.4187 80306.10328 90637.00651 83062.46161 74283.13772 76664.52644 81244.60372 79154.07429 1.133873747 1.082213996 1.300140513 1.01455426 1.14507064 1.049376957 0.938462592 0.968548077 1.026410889 1 16.27237599 -6.459395362 3.257558278 0.980862233 1.134791278 0.508035019 0.070333696 0.209255243 4.372168536 0.026838075 0.022321582 3.47E-07 6.459395362 0.153929045 EALNIIGDISTSTVSTPVPPPVDDT(ph)WLQSASSHSPTPQR ddPTM_HeLa_A485_30min_R1 1 EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHSPTPQR 39 0 P50570-3;P50570-2;P50570-5;P50570-4;P50570;K7ENE7 P50570-3 DNM2 Dynamin-2 1 0 EALNIIGDISTSTVSTPVPPPVDDT(0.296)WLQS(0.165)AS(0.124)S(0.124)HS(0.124)PT(0.165)PQR 135.75 7.78E-07 243070000 62716 96612 126320 38762 123600 83260 105500 87283 99830 90145 TRUE FALSE FALSE 76666.95783 107909.933 173051.0246 40879.46991 111293.95 87619.36486 82959.06314 65876.7074 119864.9653 67673.5105 1.132894648 1.594566799 2.557145674 0.604069001 1.644571845 1.294736511 1.225872022 0.973448945 1.771224286 1 16.04630361 -5.274282874 24.99313803 1.236683267 1.744838902 0.233429898 0.451442867 1158.954493 2255295.806 0.124546854 0.186061745 5.32E-06 5.274282874 0.508155635 EALPWGLEPQDVQSSDEMRS(ph)PEGYLR ddPTM_HeLa_A485_30min_R1 2 EALPWGLEPQDVQSSDEMRSPEGYLR 26 1 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 EALPWGLEPQDVQS(0.049)S(0.063)DEMRS(0.888)PEGYLR;EALPWGLEPQDVQS(0.002)S(0.002)DEMRS(0.996)PEGYLR ; 140.35 3.07E-07 236530000 44537 69064 60181 40477 71441 55147 64182 85903 61028 64931 TRUE FALSE FALSE 54444.102 77140.43402 82444.45624 42688.15602 64328.0832 58034.41165 50468.99138 64835.15456 73275.75982 48744.89667 1.116919016 1.582533543 1.69134539 0.875746159 1.319688574 1.190574103 1.035369748 1.330091127 1.503249875 1 15.57296356 -5.2483238 24.9999121 1.193328417 1.475492711 0.259028337 0.219212328 1119.375959 2133665.585 0.059497472 0.102252034 5.65E-06 5.2483238 0.282164294 EALPWGLEPQDVQSSDEMRS(ph)PEGYLR ddPTM_HeLa_A486_30min_R1 1 EALPWGLEPQDVQSSDEMRSPEGYLR 26 1 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 EALPWGLEPQDVQS(0.069)S(0.069)DEMRS(0.863)PEGYLR 126.18 4.31E-06 135580000 22021 27712 27259 9176.9 32245 22607 30022 29070 22214 33311 TRUE FALSE FALSE 20477.44162 25516.00019 37814.41482 21364.28697 28200.53143 19817.97819 22510.17806 22451.39559 24139.52741 24969.70878 0.820091327 1.021878165 1.514411528 0.855608176 1.129389681 0.79368079 0.901499423 0.899145272 0.966752461 1 14.60789137 -6.248590772 24.76686495 0.905242405 1.078668587 0.151146895 0.183724665 1277.974783 2463414.416 0.061542942 0.061149463 5.64E-07 6.248590772 0.173426182 EALS(ph)GGEASLVEK ddPTM_HeLa_A486_30min_R1 1 EALSGGEASLVEK 13 0 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 EALS(1)GGEASLVEK 139.66 3.44E-06 21972000 27506 36161 27102 14077 34743 49187 42509 46380 32538 45247 TRUE FALSE FALSE 25577.97144 33295.47066 37596.62022 32771.96741 30385.20897 43118.80804 31872.79859 35820.28647 35358.42004 33916.85669 0.754137439 0.981679139 1.108493648 0.96624424 0.895873378 1.271309085 0.939733268 1.056120465 1.042502858 1 15.04971485 -4.290171215 3.494344765 1.035208359 0.728217465 0.421513588 0.098202871 0.248219752 5.344576252 0.02419979 0.192524403 5.13E-05 4.290171215 -0.306990894 EALS(ph)PCPSTVSTK ddPTM_HeLa_A485_30min_R1 2 EALSPCPSTVSTK 13 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EALS(1)PCPSTVSTK;EALS(0.979)PCPS(0.02)T(0.001)VSTK ; 169.54 4.86E-12 472110000 641200 676990 561340 659660 907780 650490 849450 879890 566020 976530 TRUE FALSE FALSE 783832.7279 756158.0915 769003.0253 695695.5555 817398.2358 684548.6506 667958.0681 664095.5979 679615.0222 733099.0427 1.069204408 1.031454207 1.048975623 0.948978944 1.114990183 0.933773761 0.91114301 0.905874321 0.927043936 1 19.4836486 -6.368967532 8.605618608 0.927516794 1.03713238 0.573171802 0.045866788 0.227410547 16.58017098 0.015430433 0.013592997 4.28E-07 6.368967532 0.109615585 EALS(ph)PCPSTVSTK ddPTM_HeLa_A486_30min_R1 4 EALSPCPSTVSTK 13 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EALS(1)PCPSTVSTK;EALS(0.983)PCPS(0.017)TVSTK;EALS(0.786)PCPS(0.21)T(0.004)VSTK;EALS(0.999)PCPS(0.001)TVSTK ;;; 236.22 8.19E-35 818400000 1478850 1800840 1218270 629400 1849370 1549380 1918720 1836960 1350210 1680810 TRUE FALSE FALSE 1375190.252 1658134.88 1690016.77 1465275.008 1617404.77 1358233.249 1438635.962 1418724.309 1467247.29 1259924.236 1.091486466 1.316059198 1.341363808 1.162986604 1.283731771 1.078027718 1.141843232 1.126039383 1.164552001 1 20.26490555 -6.262609205 24.99654177 1.112454349 1.244849621 0.420566957 0.079820441 111.7549048 2387934.7 0.026811311 0.024967208 5.46E-07 6.262609205 0.132395272 EAMT(ph)DIIT(ph)LFGLS(ph)SNSK ddPTM_HeLa_A485_30min_R1 3 EAMTDIITLFGLSSNSK 17 0 P50416 P50416 CPT1A "Carnitine O-palmitoyltransferase 1, liver isoform" 3 0 EAMT(0.986)DIIT(0.986)LFGLS(0.986)S(0.041)NS(0.002)K;EAMT(0.987)DIIT(0.987)LFGLS(0.987)S(0.039)NS(0.001)K;EAMT(0.993)DIIT(0.994)LFGLS(0.994)S(0.016)NS(0.003)K ;; 43.497 0.027297 1056331000 245211 831750 1061610 60967 798040 615780 325961 521160 757310 101905 TRUE FALSE FALSE 299757.341 929015.9272 1454343.716 64297.47283 718584.3355 648021.2886 256316.7695 393344.6929 909295.1705 76501.95892 3.918296279 12.14368809 19.01054217 0.840468319 9.393018762 8.470649611 3.350460212 5.14162903 11.88590702 1 16.22320907 -5.274598621 24.97215315 6.066756867 11.7361275 0.246304014 4.755283603 1104.339126 2095690.179 1.329318034 1.98492067 5.31E-06 5.274598621 5.669370633 EAMT(ph)DIIT(ph)LFGLS(ph)SNSK ddPTM_HeLa_A486_30min_R1 1 EAMTDIITLFGLSSNSK 17 0 P50416 P50416 CPT1A "Carnitine O-palmitoyltransferase 1, liver isoform" 3 0 EAMT(0.987)DIIT(0.987)LFGLS(0.988)S(0.038)NS(0.001)K 43.497 0.027297 256270000 151200 267040 411730 20085 428950 117990 83691 149430 263300 46221 TRUE FALSE FALSE 140601.6608 245878.7779 571162.8825 46758.89504 375147.0912 103433.5934 62750.62661 115408.051 286123.056 34646.96075 4.058123938 7.096691096 16.48522324 1.349581436 10.82770561 2.985358346 1.811143755 3.330971852 8.258244007 1 15.08044118 -6.281343909 24.24941306 3.518703804 8.021304074 0.225604723 4.154876517 885.4091461 1078677.576 1.444148 1.275481106 5.23E-07 6.281343909 4.50260027 EAMVVSSFR ddPTM_HeLa_A485_30min_R1 1 EAMVVSSFR 9 0 Q5VZQ5 Q5VZQ5 TEX36 Testis-expressed sequence 36 protein 0 0 57.281 0.0079777 0 75533 125750 137960 65301 129570 104360 106580 118450 99713 91693 FALSE FALSE TRUE 92335.05526 140455.3686 188997.145 68868.22828 116669.5559 109824.1282 83808.31232 89399.95178 119724.4845 68835.62258 1.341384763 2.040445969 2.745629921 1.000473675 1.694900859 1.595454855 1.217513682 1.298745452 1.739280913 1 16.07086774 -5.2795314 24.99915618 1.393571816 2.042282922 0.377282133 0.398301805 864.4333295 1194452.981 0.111961381 0.166434291 5.25E-06 5.2795314 0.648711106 EANANGS(ph)SPEPVK ddPTM_HeLa_A485_30min_R1 3 EANANGSSPEPVK 13 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.5)S(0.5)PEPVK;EANANGS(0.5)S(0.5)PEPVK;EANANGS(0.5)S(0.5)PEPVK ;; 197.93 2.23E-21 2203890000 3591590 3091940 2360820 4279970 3919310 3314250 4265770 3852350 3196370 5839380 TRUE FALSE FALSE 4390526.805 3453515.487 3234185.56 4513773.924 3529089.735 3487779.005 3354353.391 2907555.122 3837852.14 4383730.032 1.001550454 0.787802958 0.737770241 1.029665123 0.805042671 0.795619023 0.765182474 0.663260534 0.875476389 1 22.06372752 -5.964026859 24.99962388 0.795984132 0.876915451 0.064056321 0.115184502 422.8525167 293860.5624 0.035113521 0.039814871 1.09E-06 5.964026859 0.080931319 EANANGS(ph)SPEPVK ddPTM_HeLa_A486_30min_R1 4 EANANGSSPEPVK 13 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.769)S(0.231)PEPVK;EANANGS(0.5)S(0.5)PEPVK;EANANGS(0.688)S(0.312)PEPVK;EANANGS(0.5)S(0.5)PEPVK ;;; 244.05 4.24E-35 2737820000 3931180 3862570 2409590 1614290 3596620 4099030 4899390 4468570 3468240 4901160 TRUE FALSE FALSE 3655624.583 3556485.886 3342647.779 3758148.702 3145498.382 3593333.354 3673510.802 3451174.159 3768869.836 3673877.635 0.995031666 0.968046908 0.909841892 1.022937908 0.856179409 0.978076493 0.999900151 0.939381902 1.025856115 1 21.80887214 -6.501950387 24.99541038 0.986626662 0.949559802 0.142895728 0.047135198 1650.784216 1971589.949 0.01610981 0.014056721 3.15E-07 6.501950387 -0.037066861 EANANGS(ph)SPEPVKAVEAR ddPTM_HeLa_A486_30min_R1 1 EANANGSSPEPVKAVEAR 18 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.59)S(0.41)PEPVKAVEAR 89.663 0.00037965 952440000 319750 240940 154170 111480 339320 214190 310430 332250 152710 368740 TRUE FALSE FALSE 297337.1762 221847.0369 213868.7528 259531.0739 296759.3216 187765.4155 232757.1306 256603.928 165947.0258 276405.1039 1.075729688 0.802615559 0.773751099 0.938951815 1.07363908 0.679312404 0.842086949 0.928361757 0.600376127 1 18.07642473 -6.270592942 24.97616583 0.80755379 0.917187792 0.156990543 0.139992213 1447.514383 3949638.012 0.048614733 0.043467133 5.36E-07 6.270592942 0.109634002 EANANGSS(ph)PEPVK ddPTM_HeLa_A485_30min_R1 2 EANANGSSPEPVK 13 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.319)S(0.681)PEPVK;EANANGS(0.184)S(0.816)PEPVK ; 237.59 7.50E-35 1855800000 2688500 2008440 1686580 3146800 2781000 2217030 3169900 2526600 2270840 4290400 TRUE FALSE FALSE 3286547.55 2243309.587 2310516.126 3318701.716 2504113.875 2333110.263 2492624.969 1906947.388 2726576.759 3220882.239 1.020387368 0.696489167 0.717355046 1.030370398 0.777462102 0.724369936 0.773895096 0.59205747 0.84653103 1 21.61902448 -5.975123265 24.99880625 0.759907951 0.850967648 0.052399445 0.140493573 598.0858535 601017.8387 0.042658692 0.048368686 1.06E-06 5.975123265 0.091059697 EANANGSS(ph)PEPVK ddPTM_HeLa_A486_30min_R1 2 EANANGSSPEPVK 13 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.155)S(0.845)PEPVK;EANANGS(0.116)S(0.884)PEPVK ; 329.17 8.15E-81 2023890000 3282400 3449700 1958520 1213430 3054400 3613500 3905500 3796100 2870300 3912200 TRUE FALSE FALSE 3052320.71 3176333.208 2716911.395 2824926.363 2671288.671 3167703.109 2928302.592 2931810.898 3119099.915 2932559.656 1.040838403 1.083126545 0.926464152 0.963297152 0.910906847 1.08018369 0.998548345 0.999744674 1.063610048 1 21.48372903 -6.28178619 24.98409211 1.02653457 0.985932604 0.141304516 0.05347604 1984.289164 2436526.484 0.020127645 0.017771104 5.23E-07 6.28178619 -0.040601966 EANANGSS(ph)PEPVKAVEAR ddPTM_HeLa_A485_30min_R1 3 EANANGSSPEPVKAVEAR 18 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.191)S(0.809)PEPVKAVEAR;EANANGS(0.041)S(0.959)PEPVKAVEAR;EANANGS(0.445)S(0.555)PEPVKAVEAR ;; 178.19 3.84E-14 3718820000 1510950 2556680 1556400 1146830 2866040 3034060 3833400 5868700 1708840 1964240 TRUE FALSE FALSE 1847055.615 2855661.486 2132177.127 1209478.419 2580686.994 3192918.69 3014362.774 4429392.123 2051788.514 1474591.117 1.252588323 1.936578522 1.445944644 0.820212739 1.750103445 2.165290875 2.04420245 3.003810393 1.391428776 1 20.49188354 -5.996662688 24.99999672 2.043200302 1.394925698 0.165987764 0.55653369 150.6135227 1128235.96 0.168778711 0.190438468 1.01E-06 5.996662688 -0.648274604 EANANGSS(ph)PEPVKAVEAR ddPTM_HeLa_A486_30min_R1 1 EANANGSSPEPVKAVEAR 18 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.099)S(0.901)PEPVKAVEAR 187.07 3.05E-18 825610000 835400 565820 435940 325890 928960 524620 883180 924910 430290 899600 TRUE FALSE FALSE 776842.774 520982.3625 604747.6429 758688.3896 812441.1746 459897.7183 662199.0227 714328.1836 467587.8837 674334.3046 1.152014318 0.77258766 0.896806879 1.125092383 1.204804752 0.682002555 0.982004057 1.059308682 0.693406639 1 19.36310447 -6.255554736 24.97318223 0.893217411 1.013800255 0.161175019 0.164696915 1178.544223 5001494.442 0.056630066 0.055200303 5.55E-07 6.255554736 0.120582844 EANLQQNEEKNHSDSSTSESEVSSVS(ph)PLK ddPTM_HeLa_A485_30min_R1 1 EANLQQNEEKNHSDSSTSESEVSSVSPLK 29 1 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 EANLQQNEEKNHSDSSTSESEVSS(0.029)VS(0.971)PLK 223.86 8.57E-39 657680000 172500 124450 110470 197090 302890 236140 456180 362250 201040 390160 TRUE FALSE FALSE 210872.0299 139003.3449 151337.45 207856.5276 272733.2081 248503.9253 358713.4164 273407.6195 241386.884 292900.2924 0.719944757 0.474575644 0.516685896 0.709649437 0.93114693 0.848424982 1.224694634 0.933449459 0.82412647 1 18.16005011 -5.661667975 2.220451786 0.973803909 0.560211422 0.694487823 0.117992714 0.17008538 1.712642934 0.039448236 0.0542329 2.18E-06 5.661667975 -0.413592487 EANLQQNEEKNHSDSSTSESEVSSVS(ph)PLK ddPTM_HeLa_A486_30min_R1 1 EANLQQNEEKNHSDSSTSESEVSSVSPLK 29 1 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 EANLQQNEEKNHSDSSTSESEVSS(0.001)VS(0.999)PLK 152.23 1.06E-09 169330000 78794 64087 41856 23046 104790 93825 158520 150690 71631 129750 TRUE FALSE FALSE 73270.94749 59008.51272 58063.76414 53652.25268 91646.26107 82249.82544 118856.6193 116381.1765 77840.03275 97259.75547 0.753353195 0.606710478 0.596996814 0.551638778 0.942283482 0.845671728 1.222053446 1.196601575 0.800331364 1 16.56955534 -6.028889893 1.866648214 1.050949984 0.623768622 0.63152083 0.137567733 0.212896432 1.490466437 0.052330915 0.05641362 9.36E-07 6.028889893 -0.427181362 EANNGSS(ph)PAGSLADAMSQK ddPTM_HeLa_A485_30min_R1 1 EANNGSSPAGSLADAMSQK 19 0 P51692;C9J4I3 P51692 STAT5B Signal transducer and activator of transcription 5B 1 0 EANNGS(0.228)S(0.772)PAGSLADAMSQK 150.91 1.39E-08 136670000 352840 331520 284050 406910 435780 376290 526140 522210 358490 593280 TRUE FALSE FALSE 431328.0407 370288.3802 389131.9153 429138.4629 392392.2131 395991.9625 413725.8908 394137.1787 430435.6547 445386.2145 0.968435993 0.83138716 0.873695464 0.96351986 0.881015623 0.889097933 0.9289149 0.884933493 0.96643237 1 18.76469738 -7.915883711 4.017206223 0.999278283 0.901126056 0.408354304 0.039641321 0.186466302 5.420562202 0.037013441 0.009760907 1.21E-08 7.915883711 -0.098152227 EANNGSS(ph)PAGSLADAMSQK ddPTM_HeLa_A486_30min_R1 1 EANNGSSPAGSLADAMSQK 19 0 P51692;C9J4I3 P51692 STAT5B Signal transducer and activator of transcription 5B 1 0 EANNGS(0.011)S(0.989)PAGSLADAMSQK 323.57 3.23E-90 151660000 162240 167860 112590 58133 160330 166200 198050 187160 139820 181920 TRUE FALSE FALSE 150867.8138 154558.1623 156187.8633 135336.5619 140219.9164 145695.9338 148495.7952 144547.7537 151939.7102 136366.0479 1.106344403 1.133406479 1.145357409 0.992450569 1.028261202 1.068417953 1.088949907 1.059998115 1.114204837 1 17.05712496 -5.236936299 24.99911331 1.054269784 1.128873144 0.48863214 0.036429393 725.9682419 740663.6264 0.010209932 0.017676696 5.80E-06 5.236936299 0.074603361 EAPAEGEAAEPGS(ph)PTAAEGEAASAASSTSSPK ddPTM_HeLa_A485_30min_R1 2 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGS(0.784)PT(0.213)AAEGEAAS(0.003)AASSTSSPK;EAPAEGEAAEPGS(0.49)PT(0.199)AAEGEAAS(0.298)AAS(0.012)S(0.001)TSSPK ; 82.503 0.00040954 276250000 220830 218480 165826 234790 258440 229720 310920 313760 188009 350280 TRUE FALSE FALSE 269952.8716 244029.3355 227171.938 247615.9832 232708.8062 241747.784 244489.402 236809.868 225740.6818 262961.6424 1.026586498 0.928003542 0.863897624 0.941642975 0.884953425 0.919327175 0.929753099 0.900549091 0.858454791 1 18.00449285 -4.285020062 3.971299303 0.909021622 1.034816423 0.430508041 0.03895611 0.182680711 5.905842173 0.009076254 0.06347325 5.19E-05 4.285020062 0.125794801 EAPAEGEAAEPGS(ph)PTAAEGEAASAASSTSSPK ddPTM_HeLa_A486_30min_R1 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGS(0.674)PT(0.306)AAEGEAAS(0.019)AAS(0.001)STSSPK 106.5 8.31E-05 250360000 395400 385720 254350 157610 418730 410120 469470 460350 310920 475220 TRUE FALSE FALSE 367684.5018 355154.1424 352841.1317 366924.0452 366208.9789 359523.5642 352003.6405 355538.3544 337870.7959 356221.8188 1.032178498 0.997002777 0.990509601 1.030043714 1.028036351 1.00926879 0.988158563 0.998081351 0.948484282 1 18.44241636 -6.934317059 1.863135434 0.979176558 1.014288247 0.4094372 0.018281903 0.369840803 2.566320064 0.0108246 0.005853269 1.16E-07 6.934317059 0.035111689 EAPAEGEAAEPGSPT(ph)AAEGEAASAASSTSSPK ddPTM_HeLa_A486_30min_R1 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGS(0.454)PT(0.522)AAEGEAAS(0.022)AAS(0.002)STSSPK 100.06 0.00020775 103880000 283310 297830 201710 126470 303520 296340 360630 348320 240450 373560 TRUE FALSE FALSE 263451.432 274228.8661 279817.514 294428.5514 265449.6914 259780.5838 270396.5596 269015.1398 261292.3996 280018.1445 0.940837003 0.979325345 0.999283509 1.051462404 0.947973182 0.927727681 0.965639423 0.960706101 0.933126673 1 18.09516079 EAPEEDPRLPDNFRPPGEDFRS(ph)PPDDFR ddPTM_HeLa_A485_30min_R1 2 EAPEEDPRLPDNFRPPGEDFRSPPDDFR 28 3 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 EAPEEDPRLPDNFRPPGEDFRS(1)PPDDFR;EAPEEDPRLPDNFRPPGEDFRS(1)PPDDFR ; 92.349 0.013007 965030000 127420 150258 141858 146039 180404 160771 181044 215268 134443 173277 TRUE FALSE FALSE 155764.1394 167829.366 194337.1774 154016.7408 162442.3443 169188.721 142362.4704 162473.1855 161424.4769 130082.2328 1.197428242 1.290179007 1.493956347 1.183995212 1.248766575 1.300628974 1.09440365 1.249003664 1.240941775 1 16.9890644 -13.99999741 0.139993747 0.082459265 1.352930265 0.424262152 0.094032768 134.6444352 1.153427624 34.20272051 0.591585137 1.00E-14 13.99999741 1.270471 EAPEEDPRLPDNFRPPGEDFRS(ph)PPDDFR ddPTM_HeLa_A486_30min_R1 1 EAPEEDPRLPDNFRPPGEDFRSPPDDFR 28 3 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 EAPEEDPRLPDNFRPPGEDFRS(1)PPDDFR 70.08 0.0074336 294550000 194140 234130 201500 93937 301110 209970 255920 274090 197560 244030 TRUE FALSE FALSE 180531.7885 215576.6861 279526.1964 218690.0833 263341.9761 184066.0362 191886.1092 211685.6903 214684.6599 182923.2996 0.986926154 1.178508624 1.528106025 1.195528857 1.439630581 1.006247081 1.048997637 1.157237437 1.17363212 1 17.48087932 -6.279560969 24.93543081 1.085286119 1.271569138 0.289022892 0.147424428 1131.669144 1557179.982 0.053398982 0.047189798 5.25E-07 6.279560969 0.18628302 EAPGS(ph)PPLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EAPGSPPLSPR 11 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 2 0 EAPGS(1)PPLS(1)PR;EAPGS(1)PPLS(1)PR ; 119.72 0.00040145 1944090000 2531830 3138700 2598400 995790 3340500 2567350 2838300 2982800 2177140 2603820 TRUE FALSE FALSE 2354361.791 2889977.981 3604570.068 2318249.444 2921503.341 2250616.46 2128127.32 2303681.554 2365856.248 1951806.524 1.206247526 1.480668266 1.846786566 1.187745515 1.496820154 1.153094035 1.09033723 1.180281716 1.212136664 1 20.89637862 -6.269413061 20.77899207 1.136135234 1.45388916 0.43983588 0.178249931 60.18018149 156823.8346 0.062706852 0.05656474 5.38E-07 6.269413061 0.317753925 EAPGS(ph)PPLSPR ddPTM_HeLa_A486_30min_R1 1 EAPGSPPLSPR 11 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 EAPGS(0.989)PPLS(0.011)PR 88.101 0.0030647 1527100000 775240 919540 777460 262540 1152000 912370 1014400 1042900 802420 937190 TRUE FALSE FALSE 720899.6793 846672.3015 1078513.333 611206.388 1007505.418 799811.0657 760586.3908 805454.4363 871974.4117 702511.5239 1.026174881 1.205207705 1.535225112 0.870030408 1.434147888 1.138502414 1.082667494 1.14653555 1.241224353 1 19.42216237 -6.48871954 24.9337999 1.127070388 1.219773562 0.059090233 0.183577624 1986.082501 1449702.137 0.062672237 0.055242241 3.25E-07 6.48871954 0.092703174 EAPGT(ph)PR ddPTM_HeLa_A485_30min_R1 1 EAPGTPR 7 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 EAPGT(1)PR 98.233 0.023973 251240000 500990 688140 416030 536390 473230 647250 657680 803090 562400 819310 TRUE FALSE FALSE 612433.4971 768611.987 569936.8095 565691.6275 426113.5596 681139.0092 517161.2952 606130.9183 675268.5214 615071.0953 0.995711718 1.249631129 0.9266194 0.919717463 0.692787489 1.107415085 0.840815475 0.985464807 1.09787068 1 19.23039365 -4.787023232 24.96272776 0.937795356 1.122671449 0.232108901 0.127538224 255.5621123 249357.2753 0.03267279 0.068052755 1.63E-05 4.787023232 0.184876093 EAPPPVLLT(ph)PK ddPTM_HeLa_A486_30min_R1 2 EAPPPVLLTPK 11 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 EAPPPVLLT(1)PK;EAPPPVLLT(1)PK ; 106.17 0.0034315 359780000 163501 162805 92319 71382 131487 157330 198070 183299 117818 212470 TRUE FALSE FALSE 152040.4242 149903.7389 128067.3892 166180.9034 114994.6744 137920.2242 148510.791 141565.8191 128030.5591 159266.1291 0.954631252 0.941215435 0.804109386 1.043416478 0.722028438 0.865973356 0.932469395 0.888863313 0.803878137 1 17.28107996 -4.554539959 24.91225227 0.879343018 0.951277459 0.07797402 0.089824371 386.0888973 303788.1936 0.021720766 0.057468738 2.79E-05 4.554539959 0.071934441 EAPS(ph)PLMIHS(ph)PQMSQFQSLT(ph)HQSPPQQNVQPK ddPTM_HeLa_A485_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 3 0 EAPS(1)PLMIHS(0.998)PQMS(0.009)QFQS(0.131)LT(0.591)HQS(0.272)PPQQNVQPK 131.6 8.37E-07 318270000 20761 21997 27557 16083 35990 33733 51442 45006 33863 38059 TRUE FALSE FALSE 25379.21283 24569.3578 37751.48104 16961.57357 32406.70923 35499.20772 40450.99646 33968.20793 40658.99349 28571.59172 0.888267377 0.859922613 1.321294291 0.593651685 1.134228346 1.242465175 1.415776791 1.188880489 1.423056646 1 14.80229379 -5.992513323 24.99272039 1.266216039 0.931156521 0.389363846 0.199352454 183.1886301 611531.9053 0.059432636 0.067261249 1.02E-06 5.992513323 -0.335059517 EAPS(ph)PLMIHSPQMS(ph)QFQSLTHQSPPQQNVQPK ddPTM_HeLa_A485_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 0 EAPS(1)PLMIHSPQMS(0.52)QFQS(0.054)LT(0.194)HQS(0.232)PPQQNVQPK 174.66 3.39E-15 205900000 31373 38623 33354 21289 47719 43409 58648 65543 48633 45171 TRUE FALSE FALSE 38351.81561 43139.62387 45693.03258 22451.96416 42967.92881 45681.82812 46117.37569 49468.47648 58393.19701 33910.70101 1.13096499 1.272153703 1.347451725 0.66209083 1.26709055 1.347121314 1.359965271 1.458786607 1.721969622 1 15.04945299 -6.129928805 3.887745895 1.405054631 1.117810491 0.21671466 0.2374798 0.36059882 9.502462433 0.081191278 0.081742187 7.41E-07 6.129928805 -0.28724414 EAPS(ph)PLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_HeLa_A485_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 0 EAPS(1)PLMIHSPQMS(0.117)QFQS(0.308)LT(0.221)HQS(0.355)PPQQNVQPK 180.2 4.12E-21 304720000 27243 30292 20548 20136 49623 35013 50160 51385 35261 44248 TRUE FALSE FALSE 33303.11136 33834.38589 28149.56027 21235.97869 44682.35988 36846.22654 39442.90623 38782.74818 42337.55927 33217.78792 1.002568607 1.018562283 0.847424288 0.63929539 1.345133517 1.109231795 1.187403156 1.167529526 1.274544812 1 15.01966838 -5.77169725 24.99999984 1.185784632 0.884966994 0.568868534 0.129392689 156.6696727 381826.8887 0.040655201 0.046606412 1.69E-06 5.77169725 -0.300817639 EAPS(ph)PTCPDLGAK ddPTM_HeLa_A485_30min_R1 2 EAPSPTCPDLGAK 13 0 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 EAPS(0.946)PT(0.054)CPDLGAK;EAPS(0.973)PT(0.027)CPDLGAK ; 121.42 0.00019021 142040000 373140 306200 240610 527610 451900 376430 528080 503520 317660 763370 TRUE FALSE FALSE 456143.7057 342007.4264 329621.6516 556431.9983 406907.2493 396139.2927 415251.394 380030.9305 381411.4482 573075.9078 0.79595687 0.59679254 0.57517974 0.970956885 0.710040753 0.691250997 0.724601032 0.663142396 0.665551357 1 19.12836672 -10.81120901 2.386654245 1.102991034 0.709187703 0.404256089 0.105464275 11546556.32 7080976.798 6854799.867 0.027588414 1.54E-11 10.81120901 -0.393803332 EAPS(ph)PTCPDLGAK ddPTM_HeLa_A486_30min_R1 2 EAPSPTCPDLGAK 13 0 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 EAPS(0.574)PT(0.426)CPDLGAK;EAPS(0.997)PT(0.003)CPDLGAK ; 136.33 9.73E-06 280080000 392190 396090 191841 160318 413240 492200 766250 791750 318610 605120 TRUE FALSE FALSE 364699.5063 364702.3859 266126.9729 373228.406 361407.5859 431477.3683 574526.1454 611485.8088 346227.3713 453594.0133 0.804021869 0.804028217 0.586707419 0.822824806 0.796764453 0.951241321 1.266608748 1.348090563 0.76329793 1 18.79104207 -6.417701202 2.942257936 1.122758242 0.756288089 0.480493782 0.160785638 0.217477355 3.629129316 0.062364156 0.052721198 3.82E-07 6.417701202 -0.366470153 EAPS(ph)PTLR ddPTM_HeLa_A485_30min_R1 2 EAPSPTLR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(0.986)PT(0.014)LR;EAPS(0.707)PT(0.293)LR ; 143.21 0.00037438 916500000 565410 665940 636750 569530 751560 673070 719970 760220 627920 731940 TRUE FALSE FALSE 691183.5039 743815.8901 872310.3224 600641.9818 676732.0475 708310.9044 566142.5279 573774.853 753937.7844 549480.8284 1.257884658 1.353670322 1.587517302 1.093108168 1.231584457 1.289054809 1.030322622 1.044212688 1.372091155 1 19.06770962 -5.282396862 24.99248517 1.157345671 1.395088745 0.411799579 0.13577982 791.75209 944188.4026 0.038270326 0.056825501 5.22E-06 5.282396862 0.237743075 EAPS(ph)PTLR ddPTM_HeLa_A486_30min_R1 4 EAPSPTLR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(0.937)PT(0.063)LR;EAPS(0.985)PT(0.015)LR;EAPS(0.872)PT(0.128)LR;EAPS(0.87)PT(0.13)LR ;;; 161.28 4.07E-05 2984260000 3380220 4187150 3337880 1280910 4296510 3762620 3935030 3999020 3604080 4020020 TRUE FALSE FALSE 3143284.033 3855344.985 4630396.528 2982023.214 3757601.652 3298426.2 2950443.873 3088530.444 3916484.556 3013380.826 1.043108792 1.279408481 1.536611797 0.989593877 1.246972045 1.094593213 0.979114172 1.024938639 1.299697842 1 21.52295158 -5.296499064 24.95856667 1.093764483 1.285679905 0.262895679 0.150084563 800.3282742 569742.4043 0.042531846 0.063088036 5.05E-06 5.296499064 0.191915423 EAPS(ph)PTLRR ddPTM_HeLa_A485_30min_R1 5 EAPSPTLRR 9 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(1)PTLRR;EAPS(1)PTLRR;EAPS(0.998)PT(0.002)LRR;EAPS(1)PTLRR;EAPS(0.998)PT(0.002)LRR ;;;; 174.57 1.76E-06 4291450000 830333 1112665 1018624 754169 1278326 1026825 1178074 1377984 867387 991105 TRUE FALSE FALSE 1015037.711 1242781.493 1395455.406 795367.3428 1151051.375 1080587.969 926368.8659 1040031.263 1041463.615 744040.7634 1.364223254 1.670313717 1.875509347 1.068983558 1.547027302 1.452323612 1.245051228 1.397814897 1.399739995 1 19.50502214 -12.10526329 0.101864936 4.93E-10 1.805283377 0.349908237 0.200496292 124.4929654 1.32202983 31.16648942 3.731905322 7.85E-13 12.10526329 1.805283377 EAPS(ph)PTLRR ddPTM_HeLa_A486_30min_R1 4 EAPSPTLRR 9 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(0.986)PT(0.014)LRR;EAPS(1)PTLRR;EAPS(1)PTLRR;EAPS(0.999)PT(0.001)LRR ;;; 163.83 6.58E-06 3476310000 1048870 1126600 1004940 347033 1371670 957180 1148170 1125780 883020 1025960 TRUE FALSE FALSE 975349.6294 1037324.113 1394079.681 807910.3621 1199622.358 839092.8635 860885.7219 869464.4696 959560.8846 769052.9381 1.268247712 1.348833171 1.812722652 1.050526332 1.559869677 1.091072957 1.119410224 1.130565175 1.247717598 1 19.55272338 -6.277106052 24.67203478 1.126017058 1.407371156 0.36263397 0.192266135 799.4353754 1258955.123 0.065734941 0.05817489 5.28E-07 6.277106052 0.281354098 EAPSPLMIHS(ph)PQMSQFQS(ph)LTHQSPPQQNVQPK ddPTM_HeLa_A485_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 0 EAPSPLMIHS(1)PQMS(0.001)QFQS(0.442)LT(0.311)HQS(0.246)PPQQNVQPK 195.42 3.75E-22 553060000 70573 82872 88994 55534 125620 77201 103330 115430 84111 85085 TRUE FALSE FALSE 86271.72038 92563.15951 121916.5839 58567.6818 113112.8317 81243.12498 81252.70137 87120.61151 100991.3062 63874.87537 1.350636222 1.449132526 1.908678228 0.916912659 1.770850136 1.271910505 1.272060429 1.363926129 1.581080285 1 15.96296095 -12.17507532 0.303292218 3.38E-14 1.45591142 0.18774299 0.2643079 135.2819226 3.445825002 86.68701154 0.255353312 6.68E-13 12.17507532 1.45591142 EAPSPLMIHS(ph)PQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_HeLa_A486_30min_R1 2 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 0 EAPSPLMIHS(1)PQMSQFQSLTHQS(1)PPQQNVQPK;EAPSPLMIHS(1)PQMSQFQSLT(0.018)HQS(0.982)PPQQNVQPK ; 316.01 1.11E-109 885110000 208193 214493 166617 13177.6 246440 195889 236410 204438 200784 154012 TRUE FALSE FALSE 193599.7458 197495.7935 231135.5646 30678.11876 215529.1972 171722.2068 177257.7175 157891.9303 218188.1188 115446.3928 1.676966609 1.710714287 2.002102959 0.265734754 1.866920153 1.487462733 1.535411487 1.367664476 1.889951809 1 16.81686357 -11.10254138 2.416533245 0.081567207 1.518964662 0.105856245 0.46352988 11601212.7 3721219.951 58535605.46 0.112620225 7.90E-12 11.10254138 1.437397455 EAPSPLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_HeLa_A485_30min_R1 2 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 EAPSPLMIHSPQMSQFQSLTHQS(1)PPQQNVQPK;EAPSPLMIHSPQMS(0.001)QFQS(0.016)LT(0.016)HQS(0.968)PPQQNVQPK ; 254.41 1.18E-63 2915300000 206400 201072 187115 163203 253400 205900 264850 270540 212273 234106 TRUE FALSE FALSE 252312.9679 224585.6213 256336.625 172118.3666 228170.6063 216680.6056 208262.6339 204189.6408 254874.244 175747.6826 1.435654594 1.277886672 1.458549104 0.979349281 1.298285149 1.232907327 1.185009275 1.161834044 1.450228192 1 17.42314614 -1.000000527 0.023268585 1.08E-08 2.910551489 0.231885487 0.143786708 3722.476819 6.680722183 295.0239102 586.669626 0.099999879 1.000000527 2.910551478 EAPSPLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_HeLa_A486_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 EAPSPLMIHSPQMSQFQS(0.001)LTHQS(0.999)PPQQNVQPK 275.59 9.94E-78 977820000 222110 212240 180120 11850 205640 187040 228040 239040 197870 143600 TRUE FALSE FALSE 206541.236 195421.3294 249867.2878 27587.39887 179846.7137 163964.9065 170981.98 184615.8102 215021.5309 107641.6253 1.918785928 1.815481036 2.321288693 0.256289319 1.67079151 1.523248149 1.588437368 1.715096829 1.997568601 1 16.71587655 EAPSPT(ph)LR ddPTM_HeLa_A485_30min_R1 1 EAPSPTLR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(0.279)PT(0.721)LR 132.39 0.0025341 549740000 564180 716190 681750 623140 828760 672540 758400 807380 698200 835430 TRUE FALSE FALSE 689679.8946 799942.1905 933957.695 657180.5603 746245.7444 707753.1545 596361.6444 609368.7891 838322.3357 627172.6759 1.099665086 1.275473599 1.489155588 1.047846288 1.189856914 1.128482126 0.950873128 0.971612464 1.336669099 1 19.25850318 -5.301199262 24.96662254 1.088201835 1.28683587 0.302080539 0.138436971 622.9805757 391190.1227 0.0394288 0.058483287 5.00E-06 5.301199262 0.198634035 EAQMAAK(ac)LER ddPTM_HeLa_A485_30min_R1 2 EAQMAAKLER 10 1 P16949;P16949-2 P16949 STMN1 Stathmin 0 1 ; EAQMAAK(1)LER;EAQMAAK(1)LER 123.67 0.010844 100417000 46724 65534 72024 51849 83052 64414 68740 81004 65544 77063 FALSE TRUE FALSE 57117.5926 73197.63123 98668.67477 54681.37958 74783.05127 67786.61744 54053.13745 61137.64199 78698.07959 57852.61234 0.98729496 1.265243319 1.705518053 0.945184277 1.292647786 1.1717123 0.934324921 1.056782737 1.360320242 1 15.82009449 EAQMAAK(ac)LER ddPTM_HeLa_A486_30min_R1 2 EAQMAAKLER 10 1 P16949;P16949-2 P16949 STMN1 Stathmin 0 1 ; EAQMAAK(1)LER;EAQMAAK(1)LER 150.04 0.0014481 94784000 91015 117287 97718 30076 139022 86802 111514 114917 86269 105519 FALSE TRUE FALSE 84635.3185 107992.751 135557.0266 70018.44796 121584.5644 76093.25178 83612.01773 88752.90772 93746.86638 79096.35559 1.070028042 1.365331565 1.713821396 0.885229761 1.537170247 0.962032337 1.057090647 1.12208593 1.185223588 1 16.2713236 -6.278637342 24.97546881 1.072404632 1.315507003 0.24059999 0.221026075 1265.739434 1838144.623 0.076191039 0.067357779 5.26E-07 6.278637342 0.243102371 EAQQGSHS(ph)PADSR ddPTM_HeLa_A485_30min_R1 1 EAQQGSHSPADSR 13 0 I3L301 I3L301 TFAP4 1 0 EAQQGS(0.014)HS(0.985)PADSR 62.475 0.017801 227090000 70220 158780 182180 68554 107070 134520 127140 153710 128230 95426 TRUE FALSE FALSE 85840.19674 177347.9398 249575.9631 72298.93143 96409.73485 141563.2592 99975.50036 116012.3815 153964.5848 71638.05439 1.198248577 2.475610781 3.483846194 1.009225223 1.345789409 1.976090228 1.395564148 1.619423957 2.149201093 1 16.12843854 -5.28869976 24.99467919 1.534281283 2.394873388 0.30055851 0.61812421 913.5780835 837645.6523 0.175865694 0.26092126 5.14E-06 5.28869976 0.860592104 EAQQGSHS(ph)PADSR ddPTM_HeLa_A486_30min_R1 2 EAQQGSHSPADSR 13 0 I3L301 I3L301 TFAP4 1 0 EAQQGS(0.05)HS(0.95)PADSR;EAQQGS(0.006)HS(0.994)PADSR ; 94.882 0.00042001 88402000 141602 107958 242273 38047 171125 139169 137269 120301 165515 135683 TRUE FALSE FALSE 131676.431 99403.0149 336087.5939 88575.33879 149660.9068 121999.7437 102922.8443 92911.08845 179861.9735 101707.0937 1.294663197 0.977345939 3.304465616 0.870886539 1.471489367 1.199520499 1.01195345 0.913516306 1.768430962 1 16.63406078 EAQQKVPDEEENEES(ph)DNEKETEK ddPTM_HeLa_A485_30min_R1 1 EAQQKVPDEEENEESDNEKETEK 23 2 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 EAQQKVPDEEENEES(1)DNEKETEK 117.73 3.72E-05 830610000 276710 144680 59964 711620 178070 191780 479110 419970 137380 917940 TRUE FALSE FALSE 338263.1849 161599.0675 82147.17891 750493.9987 160340.7256 201821.3043 376744.2345 316971.699 164950.9059 689114.4514 0.49086648 0.234502508 0.119206873 1.089070179 0.232676481 0.292870515 0.546707784 0.459969601 0.239366488 1 19.39438409 -10.90473265 2.530375815 1.336114849 0.414432782 0.314582549 0.260488427 62834756.96 34218996.51 125578971.8 0.064817476 1.25E-11 10.90473265 -0.921682067 EAQQKVPDEEENEES(ph)DNEKETEK ddPTM_HeLa_A486_30min_R1 4 EAQQKVPDEEENEESDNEKETEK 23 2 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 EAQQKVPDEEENEES(1)DNEKETEK;EAQQKVPDEEENEES(1)DNEKETEK;EAQQKVPDEEENEES(1)DNEKETEK;EAQQKVPDEEENEES(1)DNEKETEK ;;; 249.96 9.08E-50 5795630000 2402282 1882467 419251 2095889 893006 2760716 4782490 3384270 1430424 7260900 TRUE FALSE FALSE 2233894.437 1733293.459 581596.2151 4879335.512 780996.8605 2420126.929 3585860.418 2613745.599 1554414.304 5442723.379 0.410436886 0.318460693 0.106857574 0.896487874 0.143493763 0.444653671 0.658835691 0.480227529 0.285594949 1 22.37589728 -14 0.257244839 4.636702681 0.373271793 0.378671648 0.222668884 204.1230249 2.013887839 392.1560482 0.298840324 1.00E-14 14 -4.263430889 EAQSFISAAIEPES(ph)GKSNER ddPTM_HeLa_A486_30min_R1 1 EAQSFISAAIEPESGKSNER 20 1 Q8WXA9;Q8WXA9-2 Q8WXA9 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 1 0 EAQSFISAAIEPES(0.605)GKS(0.395)NER 103.71 3.28E-05 168210000 60561 71001 43590 31206 61446 73933 91500 90382 51897 91631 TRUE FALSE FALSE 56315.98664 65374.62218 60469.21538 72649.14506 53738.86972 64811.89816 68605.73221 69803.99163 56395.47375 68686.00118 0.819904867 0.951789609 0.880371755 1.057699441 0.782384602 0.943596905 0.998831363 1.016276831 0.82106212 1 16.06772847 -6.509694507 24.82441484 0.961944014 0.90461466 0.100208967 0.086007429 1477.169588 2781350.995 0.030235319 0.025453373 3.09E-07 6.509694507 -0.057329354 EAQSSQATPVQTSQPDSSNIVKVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 EAQSSQATPVQTSQPDSSNIVKVSPR 26 1 H7C5E4;Q8IZH2-2;Q8IZH2 H7C5E4 XRN1 5-3 exoribonuclease 1 1 0 EAQSSQATPVQTSQPDSSNIVKVS(1)PR;EAQSSQATPVQTSQPDSSNIVKVS(0.999)PR ; 207.7 7.67E-29 943190000 275440 278990 263320 354150 402930 316700 384880 402730 325570 474860 TRUE FALSE FALSE 336710.6777 311615.4536 360733.0257 373496.3177 362812.8744 333281.9223 302647.2438 303959.836 390908.9127 356486.1412 0.944526698 0.874130626 1.011913183 1.047716235 1.017747487 0.934908497 0.848973379 0.852655408 1.096561318 1 18.44348647 -6.406614766 9.502842087 0.930862112 0.978923558 0.021649422 0.080344198 1.120656028 85.01698708 0.029672847 0.026146524 3.92E-07 6.406614766 0.048061445 EAQSSQATPVQTSQPDSSNIVKVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EAQSSQATPVQTSQPDSSNIVKVSPR 26 1 H7C5E4;Q8IZH2-2;Q8IZH2 H7C5E4 XRN1 5-3 exoribonuclease 1 1 0 EAQSSQATPVQTSQPDS(0.002)S(0.002)NIVKVS(0.996)PR;EAQSSQATPVQTSQPDS(0.002)S(0.002)NIVKVS(0.995)PR ; 192.38 6.06E-21 1261830000 475100 476140 291336 192703 493590 477810 631110 592860 394190 617600 TRUE FALSE FALSE 441797.9434 438408.9323 404149.1014 448622.3227 431679.3397 418862.6602 473199.6028 457878.72 428358.7066 462948.9401 0.954312463 0.946991978 0.872988501 0.969053569 0.932455617 0.904770751 1.022142102 0.989047993 0.925282832 1 18.82049356 -6.752357714 24.99879747 0.983205568 0.930145833 0.37871484 0.033889692 213.9367365 588897.7389 0.013103526 0.010000028 1.77E-07 6.752357714 -0.053059735 EAQTLDSQIQETS(ph)I ddPTM_HeLa_A485_30min_R1 1 EAQTLDSQIQETSI 14 0 E7EVA0;P27816-4;P27816;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 EAQTLDSQIQET(0.141)S(0.859)I 148.96 7.97E-07 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 EAQTLDSQIQETS(ph)I ddPTM_HeLa_A486_30min_R1 1 EAQTLDSQIQETSI 14 0 E7EVA0;P27816-4;P27816;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 EAQTLDSQIQET(0.016)S(0.984)I 169.62 4.15E-12 51779000 58576 70804 54957 26242 65393 62657 76545 71016 56467 71359 TRUE FALSE FALSE 54470.12489 65193.23318 76237.8222 61092.7022 57190.80017 54927.01639 57392.63139 54847.20707 61361.60503 53490.24193 1.018318911 1.218787405 1.425265982 1.142127984 1.069181931 1.026860497 1.072955166 1.025368461 1.147155122 1 15.70698811 EAQTSFLHLGYLPNQLFR ddPTM_HeLa_A485_30min_R1 1 EAQTSFLHLGYLPNQLFR 18 0 F1T0B3;A0A087X2G1;Q92499-3;Q92499 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 0 133.86 3.72E-07 27438000 14541 20814 21317 10771 24485 20168 25336 26049 15633 17568 FALSE FALSE TRUE 17775.59528 23248.01624 29203.04537 11359.39246 22047.18743 21223.96529 19922.75662 19660.44191 18770.39971 13188.62092 1.347797878 1.762732919 2.21426073 0.861302522 1.671682549 1.609263427 1.510601962 1.490712489 1.423226873 1 13.68700609 -11.88976397 0.191788806 5.30E-11 1.683119613 0.223179097 0.318593104 83.18242551 1.693281399 34.83346071 0.92683924 1.29E-12 11.88976397 1.683119613 EAQTSFLHLGYLPNQLFR ddPTM_HeLa_A486_30min_R1 2 EAQTSFLHLGYLPNQLFR 18 0 F1T0B3;A0A087X2G1;Q92499-3;Q92499 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 0 ; ; 197.14 2.80E-18 34090000 68922 89110 87257 8895.6 106251 75372 86846 85224 81961 68116 FALSE FALSE TRUE 64090.92371 82048.59907 121045.2472 20709.40636 92924.00883 66073.36897 65116.21224 65820.35563 89065.44547 51059.31024 1.25522502 1.606927291 2.370679248 0.405595106 1.819922917 1.294051343 1.275305364 1.289096059 1.744352696 1 15.63988643 -5.238163114 24.9994841 1.298472558 1.730541973 0.192806089 0.448181099 1459.384604 1567425.953 0.117403207 0.203182439 5.78E-06 5.238163114 0.432069415 EARNS(ph)WDSPAFSNDVIR ddPTM_HeLa_A485_30min_R1 1 EARNSWDSPAFSNDVIR 17 1 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y695;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 EARNS(1)WDSPAFSNDVIR 81.574 0.0014391 62425000 50896 75018 65193 55928 110470 80237 97709 130690 63593 69603 TRUE FALSE FALSE 62217.63961 83790.70253 89310.60361 58983.20502 99471.21892 84438.08525 76832.67394 98638.07259 76355.53179 52252.25305 1.190716878 1.603580662 1.709220146 1.128816493 1.903673299 1.615970228 1.470418393 1.887728602 1.461286879 1 15.67320563 -8.025702805 24.07929804 0.999999989 1.572220898 0.326857965 0.241575779 1824.08226 1708863.642 0.224538592 0.057975615 9.43E-09 8.025702805 0.572220909 EAS(ph)PAPLAQGEPGREDLPTR ddPTM_HeLa_A485_30min_R1 3 EASPAPLAQGEPGREDLPTR 20 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR ;; 139.02 4.98E-08 1495510000 663840 592060 666630 881410 846950 625510 827060 671200 810700 1201440 TRUE FALSE FALSE 811508.9178 661296.2668 913244.1778 929559.1965 762624.6842 658260.7364 650351.8745 506587.1476 973400.0538 901943.1189 0.899734031 0.733190656 1.01252968 1.030618425 0.845535232 0.72982511 0.721056418 0.561661968 1.079225545 1 19.78267693 -5.997393883 24.9534461 0.785188095 0.915630783 0.065554606 0.156809661 170.1462137 1629106.657 0.048510192 0.054685723 1.01E-06 5.997393883 0.130442688 EAS(ph)PAPLAQGEPGREDLPTR ddPTM_HeLa_A486_30min_R1 4 EASPAPLAQGEPGREDLPTR 20 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR;EAS(1)PAPLAQGEPGREDLPTR ;;; 200.2 1.50E-26 2737930000 1368980 1736970 1260190 542540 1710560 1700590 1733690 1691260 1509520 1609540 TRUE FALSE FALSE 1273021.571 1599326.171 1748169.317 1263060.538 1496005.614 1490788.496 1299902.425 1306197.018 1640366.409 1206500.708 1.055135371 1.325590744 1.448958385 1.046879235 1.239954196 1.235630022 1.077415385 1.082632617 1.35960667 1 20.20239733 -5.278829673 24.96779788 1.156749451 1.28146446 0.154960059 0.135628723 1504.628236 2160239.917 0.037789137 0.05620708 5.26E-06 5.278829673 0.124715009 EAS(ph)RES(ph)S(ph)RDTS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 EASRESSRDTSPVR 14 2 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 4 0 EAS(1)RES(0.992)S(0.988)RDT(0.201)S(0.818)PVR;EAS(1)RES(0.992)S(0.999)RDT(0.229)S(0.78)PVR ; 158.5 3.30E-09 1427890000 882000 1104030 987200 1260520 1575920 1205700 1514100 1683640 1003840 1708850 TRUE FALSE FALSE 1078197.857 1233136.705 1352406.361 1329379.016 1419015.871 1268828.588 1190600.166 1270724.65 1205301.48 1282865.144 0.840460794 0.961236425 1.054207737 1.036257803 1.106130195 0.989058432 0.928078973 0.990536422 0.939538724 1 20.29093809 -4.328943776 3.246769024 1.006566401 0.828415018 0.499740059 0.0495723 0.252941762 4.340871153 0.013981279 0.101959873 4.69E-05 4.328943776 -0.178151383 EAS(ph)RES(ph)S(ph)RDTS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 EASRESSRDTSPVR 14 2 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 4 0 EAS(1)RES(1)S(0.99)RDT(0.012)S(0.998)PVR 109.83 0.00010451 1116800000 293670 343480 275460 175980 409700 370730 425070 452700 307220 432700 TRUE FALSE FALSE 273085.2495 316261.3939 382125.4891 409690.3335 358311.6057 324993.1019 318712.9901 349630.0924 333850.077 324349.1036 0.841948525 0.9750648 1.178130246 1.263115356 1.104709715 1.00198551 0.982623311 1.07794376 1.02929243 1 18.30718793 -9.487634577 14.017877 0.999991419 1.057294519 0.015209204 0.110540806 0 0 0.117228038 0.028431976 3.25E-10 9.487634577 0.0573031 EAS(ph)RES(ph)SRDT(ph)SPVR ddPTM_HeLa_A486_30min_R1 1 EASRESSRDTSPVR 14 2 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 3 0 EAS(0.996)RES(0.581)S(0.422)RDT(0.618)S(0.383)PVR 72.568 0.010733 1788300000 685830 805280 688330 419710 1119500 895400 1116200 1145200 664210 856570 TRUE FALSE FALSE 637756.8586 741466.68 954869.8101 977106.091 979081.8711 784934.6518 836914.954 884462.9595 721784.2576 642079.2967 0.993268062 1.154789889 1.487152467 1.521784141 1.5248613 1.222488649 1.303444852 1.37749802 1.124135697 1 19.29239196 -7.929349091 3.804127873 1.00211972 1.332014724 0.307631279 0.161016437 0.258188571 7.23726181 0.168765045 0.044610139 1.18E-08 7.929349091 0.329895004 EAS(ph)RESS(ph)RDTS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 EASRESSRDTSPVR 14 2 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 3 0 EAS(0.995)RES(0.097)S(0.907)RDT(0.358)S(0.643)PVR 61.707 0.026542 2828300000 140450 172650 157350 94739 253180 211230 254800 276060 159890 198910 TRUE FALSE FALSE 130605.1803 158968.5852 218280.134 220557.1798 221423.8036 185170.5902 191046.345 213207.1643 173749.3939 149101.6413 0.875947301 1.066175958 1.463968686 1.479240456 1.485052758 1.241908463 1.281316177 1.42994512 1.165308392 1 17.18593661 -4.574744848 4.418233547 1.340420396 0.911777462 0.474803108 0.150343822 0.144569125 5.827973008 0.037956909 0.117460194 2.66E-05 4.574744848 -0.428642934 EAS(ph)RSSPVEFECINEK ddPTM_HeLa_A486_30min_R1 1 EASRSSPVEFECINEK 16 1 H0YB26;O75131 H0YB26 CPNE3 Copine-3 1 0 EAS(0.333)RS(0.333)S(0.333)PVEFECINEK 74.662 0.0032262 113610000 41903 47017 40894 31213 64928 55930 71800 77124 43171 64256 TRUE FALSE FALSE 38965.81609 43291.20169 56729.25198 72665.44142 56784.12481 49029.92525 53834.88058 59564.54881 46913.09704 48165.87936 0.808992104 0.898793965 1.177789189 1.508649741 1.178928436 1.017938962 1.117697451 1.236654445 0.973990253 1 15.55572388 -4.696141809 4.454069908 1.16803433 0.834248446 0.399733577 0.146058982 0.198796207 7.598751058 0.039707806 0.111110084 2.01E-05 4.696141809 -0.333785884 EAS(ph)SS(ph)PEDRNDR ddPTM_HeLa_A485_30min_R1 1 EASSSPEDRNDR 12 1 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 2 0 EAS(0.953)S(0.05)S(0.998)PEDRNDR 126.56 0.00029766 0 150510 185930 162480 154480 198810 154780 185530 202060 169330 191660 TRUE FALSE FALSE 183990.4302 207672.8961 222588.1134 162918.8512 179015.7783 162884.0415 145889.9999 152504.4682 203312.9778 143882.6892 1.278753068 1.443348725 1.547011072 1.132303351 1.244178708 1.13206142 1.013951022 1.059922281 1.413046829 1 17.1345335 -5.276038616 24.78049477 1.143187661 1.425068728 0.502398212 0.128068631 562.8553367 955379.9441 0.03617117 0.05392192 5.30E-06 5.276038616 0.281881068 EAS(ph)SS(ph)PEDRNDR ddPTM_HeLa_A486_30min_R1 1 EASSSPEDRNDR 12 1 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 2 0 EAS(0.626)S(0.394)S(0.98)PEDRNDR 96.707 0.0059291 108490000 187020 161160 142220 60417 167830 193930 179440 166990 173140 204560 TRUE FALSE FALSE 173910.8638 148389.0947 197291.3928 140653.8293 146779.1964 170004.8883 134542.2141 128970.0224 188147.9146 153336.8445 1.134175314 0.967732805 1.286653533 0.917286577 0.957233709 1.108702144 0.87742913 0.841089581 1.227023519 1 17.22634487 -5.302350628 24.99823014 0.982114525 1.113342193 0.195533575 0.12793221 821.9928591 502265.3421 0.035148934 0.05213484 4.98E-06 5.302350628 0.131227668 EAS(ph)SSEEPR ddPTM_HeLa_A485_30min_R1 1 EASSSEEPR 9 0 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 EAS(0.873)S(0.064)S(0.064)EEPR 132.88 0.00021514 224470000 289550 302230 277710 375250 407070 275910 417860 411810 290670 449890 TRUE FALSE FALSE 353959.3986 337573.1694 380446.4855 395748.9573 366540.6815 290356.221 328580.7974 310812.9518 349004.8028 337740.7026 1.048021147 0.999503959 1.126445473 1.171753817 1.085272455 0.859701596 0.972878883 0.920270934 1.033351326 1 18.36555653 -6.197252462 12.22048214 0.953250433 1.088432642 0.530084554 0.06063364 1.054424496 199.5834041 0.020888888 0.020889192 6.35E-07 6.197252462 0.135182209 EAS(ph)SSEEPR ddPTM_HeLa_A486_30min_R1 2 EASSSEEPR 9 0 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 EAS(0.333)S(0.333)S(0.333)EEPR;EAS(0.333)S(0.333)S(0.333)EEPR ; 159.83 1.48E-05 585330000 490490 513210 488760 239060 637960 655040 666220 629520 564790 637730 TRUE FALSE FALSE 456109.1839 472541.3705 678020.9614 556543.7614 557941.1081 574227.8248 499524.7094 486192.0383 613746.4519 478038.2571 0.954126949 0.988501158 1.418340376 1.164224313 1.167147398 1.201217301 1.04494714 1.017056755 1.283885636 1 18.86676656 -6.762915599 24.9999585 1.087893783 1.155403895 0.045073657 0.138859475 149.0894408 2524746.71 0.058153682 0.041627944 1.73E-07 6.762915599 0.067510112 EASRPPEEPSAPS(ph)PTLPAQFK ddPTM_HeLa_A485_30min_R1 4 EASRPPEEPSAPSPTLPAQFK 21 1 H0Y3X6;A0A0C4DFX9;Q9H3P2;Q9H3P2-7 H0Y3X6 NELFA Negative elongation factor A 1 0 EASRPPEEPS(0.001)APS(0.883)PT(0.116)LPAQFK;EASRPPEEPSAPS(0.952)PT(0.048)LPAQFK;EASRPPEEPSAPS(0.981)PT(0.019)LPAQFK;EASRPPEEPSAPS(0.985)PT(0.015)LPAQFK ;;; 255.42 4.44E-59 6218570000 2731620 2988750 2520210 3105230 3539840 3469220 4324880 4977900 3066730 4560160 TRUE FALSE FALSE 3339259.445 3338258.314 3452540.554 3274860.852 3187401.1 3650862.995 3400834.057 3757062.22 3682194.581 3423396.036 0.975423062 0.975130624 1.008513335 0.956611744 0.931064086 1.066444828 0.993409475 1.097466428 1.075597022 1 21.70699677 -6.272019903 24.85316606 1.049351826 0.971138014 0.550976536 0.034798416 523.1917578 1228949.884 0.012393343 0.011040258 5.35E-07 6.272019903 -0.078213812 EASRPPEEPSAPS(ph)PTLPAQFK ddPTM_HeLa_A486_30min_R1 4 EASRPPEEPSAPSPTLPAQFK 21 1 H0Y3X6;A0A0C4DFX9;Q9H3P2;Q9H3P2-7 H0Y3X6 NELFA Negative elongation factor A 1 0 EASRPPEEPSAPS(0.992)PT(0.008)LPAQFK;EASRPPEEPS(0.002)APS(0.977)PT(0.021)LPAQFK;EASRPPEEPSAPS(0.999)PT(0.001)LPAQFK;EASRPPEEPS(0.002)APS(0.838)PT(0.16)LPAQFK ;;; 249.19 3.01E-47 5243100000 4851660 5119060 3472760 1789670 5427580 5295280 5865340 5768190 4292680 5997750 TRUE FALSE FALSE 4511583.688 4713407.042 4817505.676 4166442.205 4746802.306 4642002.192 4397769.895 4454899.056 4664772.959 4495874.361 1.003494165 1.048384956 1.071539213 0.926725676 1.055812935 1.03250265 0.978179002 0.990886021 1.037567464 1 22.10017029 EASS(ph)S(ph)PEDRNDR ddPTM_HeLa_A486_30min_R1 1 EASSSPEDRNDR 12 1 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 2 0 EAS(0.303)S(0.7)S(0.997)PEDRNDR 113.8 0.0013083 100780000 203490 172230 168260 60308 183870 209280 184910 175940 175660 213280 TRUE FALSE FALSE 189226.4018 158581.8675 233414.7782 140400.0718 160807.3101 183461.1614 138643.5622 135882.3027 190886.3502 159873.2998 1.183602278 0.991922152 1.459998502 0.878195871 1.005842191 1.147540969 0.867208986 0.849937438 1.193985178 1 17.28656949 -5.299124201 24.99952418 0.987444235 1.189849574 0.306651158 0.150426377 699.6484653 464134.381 0.041578293 0.061672213 5.02E-06 5.299124201 0.202405339 EASS(ph)SPEDRNDR ddPTM_HeLa_A485_30min_R1 1 EASSSPEDRNDR 12 1 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 1 0 EAS(0.095)S(0.587)S(0.318)PEDRNDR 114.31 0.00014721 273220000 183220 249300 176630 192740 251990 253810 280480 329030 227200 293860 TRUE FALSE FALSE 223976.6569 278453.4664 241972.7872 203268.8982 226900.9908 267099.0991 220553.1567 248334.8766 272796.956 220606.1101 1.015278574 1.2622201 1.096854421 0.921411007 1.02853448 1.210751139 0.999759964 1.125693556 1.236579331 1 17.75111322 -7.501234853 24.24544323 1.139238594 1.080344774 0.02627899 0.108577806 1724.021904 1931261.379 0.060920354 0.028797191 3.15E-08 7.501234853 -0.05889382 EASSS(ph)PEDRNDR ddPTM_HeLa_A485_30min_R1 1 EASSSPEDRNDR 12 1 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 1 0 EAS(0.06)S(0.385)S(0.556)PEDRNDR 125.36 2.05E-05 270910000 170100 246210 208350 157470 227260 200650 241760 281650 221290 255370 TRUE FALSE FALSE 207938.1582 275002.1178 285427.3352 166072.1874 204633.1964 211155.7237 190106.001 212574.8959 265700.8732 191710.9587 1.084644089 1.434462169 1.488842041 0.866263402 1.067404794 1.101427509 0.991628242 1.108830175 1.385945149 1 17.54857328 -5.252590805 24.98483923 1.076407853 1.3458307 0.363114435 0.158519494 700.0714712 1976718.175 0.043563056 0.074002539 5.59E-06 5.252590805 0.269422846 EASSS(ph)PEDRNDR ddPTM_HeLa_A486_30min_R1 2 EASSSPEDRNDR 12 1 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 1 0 EAS(0.08)S(0.383)S(0.537)PEDRNDR;EAS(0.019)S(0.107)S(0.874)PEDRNDR ; 128.73 1.62E-05 489390000 397380 350390 400590 148873 385470 455300 396830 379840 406280 459140 TRUE FALSE FALSE 369525.7141 322623.8203 555709.1762 346583.8676 337120.7582 399129.7152 297538.9368 293358.7238 441496.6775 344168.3555 1.073677194 0.937401173 1.614643436 1.007018403 0.97952282 1.15969324 0.864515671 0.852369833 1.282792768 1 18.39275493 EAT(ph)EKARHET(ph)FAAEMR ddPTM_HeLa_A486_30min_R1 1 EATEKARHETFAAEMR 16 2 Q9H4K1 Q9H4K1 RIBC2 RIB43A-like with coiled-coils protein 2 2 0 EAT(1)EKARHET(1)FAAEMR 40.237 0.010399 0 326700 310750 203340 149670 412010 401490 551440 555540 270190 453080 TRUE FALSE FALSE 303800.0171 286125.0383 282078.6936 348439.3239 360331.864 351958.2459 413463.8795 429055.6694 293610.2867 339625.8189 0.894513904 0.842471397 0.830557272 1.025950633 1.060967229 1.036311806 1.217410033 1.263318763 0.864511089 1 18.37358661 -5.422219523 2.665065318 1.092306603 0.852790073 0.450713433 0.106165073 0.2424957 3.350321823 0.032568088 0.051587792 3.78E-06 5.422219523 -0.23951653 EATAQKPTGSVGSTVT(ph)TPPPLVR ddPTM_HeLa_A485_30min_R1 3 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 EATAQKPTGSVGS(0.001)T(0.006)VT(0.497)T(0.497)PPPLVR;EATAQKPTGSVGS(0.002)T(0.009)VT(0.59)T(0.399)PPPLVR;EATAQKPTGSVGS(0.005)T(0.026)VT(0.81)T(0.159)PPPLVR ;; 158.8 1.84E-10 1338280000 1265990 1393980 1263790 1307500 1707870 1506970 1910370 2124680 1362230 1780190 TRUE FALSE FALSE 1547605.108 1556993.835 1731318.512 1378925.414 1537828.466 1585872.619 1502203.843 1603598.899 1635617.066 1336421.395 1.158021799 1.165047073 1.295488473 1.031804354 1.150706261 1.186656114 1.124049532 1.199920104 1.223878241 1 20.34994355 -10.06733205 4.024471038 0.999971119 1.169423169 0.386414754 0.064484124 6890967.192 3450406.061 1686.996013 0.015461353 8.56E-11 10.06733205 0.169452051 EATAQKPTGSVGSTVT(ph)TPPPLVR ddPTM_HeLa_A486_30min_R1 2 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 EATAQKPTGSVGS(0.001)T(0.006)VT(0.656)T(0.338)PPPLVR;EATAQKPTGSVGS(0.018)T(0.081)VT(0.541)T(0.36)PPPLVR ; 139.67 4.81E-07 1002540000 1225270 1302830 862550 415270 1284040 1160850 1436170 1374930 1047560 1303680 TRUE FALSE FALSE 1139384.9 1199589.006 1196552.46 966769.5466 1122983.73 1017636.13 1076825.076 1061888.454 1138363.344 977230.0425 1.165933149 1.227540041 1.224432741 0.989295769 1.149149823 1.04134757 1.101915648 1.086630995 1.16488779 1 19.89833869 -5.236688736 24.95871666 1.082446946 1.208125805 0.529093281 0.055883055 583.6264499 588531.9093 0.014259805 0.024684797 5.80E-06 5.236688736 0.125678859 EATAQKPTGSVGSTVTT(ph)PPPLVR ddPTM_HeLa_A486_30min_R1 2 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 EATAQKPTGSVGST(0.001)VT(0.138)T(0.861)PPPLVR;EATAQKPTGSVGS(0.002)T(0.007)VT(0.291)T(0.7)PPPLVR ; 149.44 1.71E-09 805520000 1236310 1240430 894300 465010 1310250 1121620 1373810 1343760 1032740 1325290 TRUE FALSE FALSE 1149651.053 1142133.809 1240596.91 1082566.78 1145906.227 983245.9282 1030068.207 1037815.182 1122258.735 993428.7578 1.157255661 1.149688692 1.248803098 1.089727645 1.153486064 0.989749814 1.036881809 1.044680028 1.12968215 1 19.92205699 -5.916102705 1.847143928 1.044612723 1.174309226 0.550301158 0.052347798 0.261780348 1.825750841 0.018853056 0.022067765 1.21E-06 5.916102705 0.129696504 EATGLS(ph)PQAAQEKDGIVIVK ddPTM_HeLa_A485_30min_R1 1 EATGLSPQAAQEKDGIVIVK 20 1 P17029;C9JRM9 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 0 EAT(0.002)GLS(0.998)PQAAQEKDGIVIVK 83.09 0.00073707 99637000 63701 72609 57011 77910 135510 134110 161110 210400 82219 148040 TRUE FALSE FALSE 77871.06768 81099.99094 78101.74133 82166.02602 122018.1486 141131.7922 126687.5324 158799.0701 98719.59914 111136.3525 0.700680434 0.729734143 0.702756025 0.73932628 1.097913922 1.269897645 1.139928831 1.428867032 0.888274601 1 16.76197127 -5.792375895 3.936868109 1.172879666 0.712557433 0.691101582 0.137066876 0.111327312 3.709106064 0.040777369 0.049025019 1.61E-06 5.792375895 -0.460322232 EATNTTSEPSAPSQDLLDLSPS(ph)PR ddPTM_HeLa_A485_30min_R1 3 EATNTTSEPSAPSQDLLDLSPSPR 24 0 I3NI44;J3KQU4;I3L4I4;O75674-2;O75674-3;O75674 I3NI44 TOM1L1 TOM1-like protein 1 1 0 EATNTTSEPSAPSQDLLDLSPS(1)PR;EATNTTSEPSAPSQDLLDLSPS(1)PR;EATNTTSEPSAPSQDLLDLS(0.002)PS(0.998)PR ;; 179.17 1.77E-20 495300000 611351 871134 781135 652444 968349 851997 951466 1031914 751253 923180 TRUE FALSE FALSE 747343.9208 973005.5434 1070109.342 688085.3636 871936.7735 896606.2455 748177.5163 778835.4735 902022.5862 693048.2159 1.07834333 1.403950723 1.544061896 0.992839095 1.258118488 1.293714095 1.079546126 1.123782524 1.301529339 1 19.4025962 -11.09360446 0.11433605 0.606137475 1.401795528 0.167319853 0.158025862 115.5883929 1.825594283 14.43006783 2.275080914 8.06E-12 11.09360446 0.795658053 EATNTTSEPSAPSQDLLDLSPS(ph)PR ddPTM_HeLa_A486_30min_R1 4 EATNTTSEPSAPSQDLLDLSPSPR 24 0 I3NI44;J3KQU4;I3L4I4;O75674-2;O75674-3;O75674 I3NI44 TOM1L1 TOM1-like protein 1 1 0 EATNTTSEPSAPSQDLLDLSPS(1)PR;EATNTTSEPSAPSQDLLDLS(0.009)PS(0.991)PR;EATNTTSEPSAPSQDLLDLS(0.004)PS(0.996)PR;EATNTTSEPSAPSQDLLDLS(0.001)PS(0.999)PR ;;; 197.56 1.49E-28 673310000 706418 906988 833400 289076 1043449 790725 888273 887147 735314 845177 TRUE FALSE FALSE 656901.7461 835114.9677 1156114.799 672983.5371 912569.8966 693173.389 666017.7002 685162.9944 799051.6096 633539.178 1.03687628 1.31817415 1.82485131 1.062260331 1.440431671 1.094128687 1.051265215 1.081484805 1.261250507 1 19.27307431 -6.27495965 23.68182856 1.099821063 1.347392608 0.238351677 0.213060466 592.6001704 1037981.975 0.075249237 0.066787766 5.31E-07 6.27495965 0.247571544 EATQPEPIY(ph)AESTK ddPTM_HeLa_A485_30min_R1 1 EATQPEPIYAESTK 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 EATQPEPIY(0.972)AES(0.014)T(0.014)K 79.693 0.0014226 0 29759 22362 19542 35177 37205 31256 45388 34682 33103 44317 TRUE FALSE FALSE 36378.78688 24977.04138 26771.39901 37098.63044 33500.73957 32892.51583 35690.48301 26176.18512 39746.46846 33269.58749 1.093454702 0.750746951 0.804680822 1.115091386 1.006947849 0.988666176 1.072766022 0.786790192 1.194678728 1 15.02191636 -5.252753543 24.98117166 1.014582971 0.869739439 0.194710799 0.129303615 993.6375541 2857775.25 0.033733763 0.057285357 5.59E-06 5.252753543 -0.144843533 EATQPEPIYAES(ph)TKR ddPTM_HeLa_A485_30min_R1 1 EATQPEPIYAESTKR 15 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 EATQPEPIY(0.277)AES(0.362)T(0.362)KR 102.58 0.00025833 555630000 227060 251020 197640 324390 306500 294420 408440 412610 234430 407940 TRUE FALSE FALSE 277568.7137 280374.6054 270755.2605 342110.6043 275983.7838 309835.3759 321173.4574 311416.7506 281477.9507 306248.0656 0.906352545 0.915514698 0.884104394 1.117102907 0.901177231 1.01171374 1.048736281 1.016877445 0.919117481 1 18.22434121 -5.171141902 25 1.000959864 0.903342334 0.386938102 0.057726946 68.36569548 18925.38924 0.01511854 0.026186075 6.74E-06 5.171141902 -0.09761753 EATQPEPIYAES(ph)TKR ddPTM_HeLa_A486_30min_R1 1 EATQPEPIYAESTKR 15 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 EATQPEPIY(0.152)AES(0.424)T(0.424)KR 95.651 0.00039887 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 EATSDPS(ph)RTPEEEPLNLEGLVAHR ddPTM_HeLa_A485_30min_R1 1 EATSDPSRTPEEEPLNLEGLVAHR 24 1 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0 A0A087WWW7 TNS1 Tensin-1 1 0 EAT(0.124)S(0.124)DPS(0.606)RT(0.147)PEEEPLNLEGLVAHR 113.91 0.00011691 37024000 18796 29896 23645 14818 27889 19179 28565 27758 19366 25370 TRUE FALSE FALSE 22977.10535 33392.07714 32392.26945 15627.46982 25112.27324 20183.18278 22461.8544 20950.30698 23252.57856 19045.7259 1.206417937 1.753258307 1.700763185 0.820523718 1.318525393 1.059722422 1.179364573 1.100000446 1.220881718 1 14.21717965 -5.248174258 24.97768262 1.114777813 1.57345768 0.55576166 0.185257845 549.0288917 1033797.449 0.048039719 0.082565507 5.65E-06 5.248174258 0.458679867 EATSDPS(ph)RTPEEEPLNLEGLVAHR ddPTM_HeLa_A486_30min_R1 2 EATSDPSRTPEEEPLNLEGLVAHR 24 1 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0 A0A087WWW7 TNS1 Tensin-1 1 0 EAT(0.078)S(0.078)DPS(0.422)RT(0.422)PEEEPLNLEGLVAHR;EAT(0.061)S(0.061)DPS(0.508)RT(0.37)PEEEPLNLEGLVAHR ; 116.94 7.89E-05 101675000 26142.4 32426.4 31103.1 11610.5 43066 33142.6 39002.4 39112.5 28944.5 29067.8 TRUE FALSE FALSE 24309.95276 29856.81397 43147.05329 27029.83076 37664.26071 29053.80298 29243.58699 30207.43757 31453.43256 21789.03368 1.11569669 1.370267925 1.980218762 1.24052453 1.728587934 1.33341402 1.34212409 1.386359671 1.443544171 1 14.4113146 -6.466529499 24.9952314 1.326997748 1.49794511 0.114455786 0.252730667 719.0425771 318950.4526 0.087965837 0.077578309 3.42E-07 6.466529499 0.170947362 EATSDPSRT(ph)PEEEPLNLEGLVAHR ddPTM_HeLa_A485_30min_R1 3 EATSDPSRTPEEEPLNLEGLVAHR 24 1 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0 A0A087WWW7 TNS1 Tensin-1 1 0 EAT(0.01)S(0.047)DPS(0.229)RT(0.715)PEEEPLNLEGLVAHR;EAT(0.025)S(0.02)DPS(0.114)RT(0.842)PEEEPLNLEGLVAHR;EAT(0.003)S(0.018)DPS(0.138)RT(0.841)PEEEPLNLEGLVAHR ;; 176.85 6.94E-15 220681000 115158 134275 124164 97455 152597 113532 151104 136227 109459 131580 TRUE FALSE FALSE 140774.4998 149977.2932 170097.4305 102778.7199 137403.9069 119476.36 118819.396 102817.1147 131426.4173 98779.52755 1.42513842 1.518303407 1.721990727 1.040486044 1.391016036 1.209525525 1.202874714 1.040874736 1.33050259 1 16.59192445 -5.263724235 24.99998195 1.187088746 1.551460109 0.619543207 0.136717541 131.5679831 1439569.81 0.036940624 0.057882874 5.45E-06 5.263724235 0.364371363 EATSDPSRT(ph)PEEEPLNLEGLVAHR ddPTM_HeLa_A486_30min_R1 1 EATSDPSRTPEEEPLNLEGLVAHR 24 1 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0 A0A087WWW7 TNS1 Tensin-1 1 0 EAT(0.007)S(0.031)DPS(0.107)RT(0.855)PEEEPLNLEGLVAHR 161.24 7.55E-14 68076000 24517 29379 28514 10019 39377 27251 32069 31119 23556 24883 TRUE FALSE FALSE 22798.48491 27050.90104 39555.38443 23324.73833 34437.96948 23889.04869 24044.99701 24033.88302 25597.85305 18652.13484 1.222298954 1.450284446 2.120689389 1.250513066 1.846328572 1.280767531 1.289128414 1.288532558 1.372381943 1 14.18705314 -6.388465942 9.709482304 1.264985826 1.58271443 0.281177851 0.264503665 0.529185814 39.06649496 0.091516091 0.080652128 4.09E-07 6.388465942 0.317728604 EATTDFTVDSRPLTQVGGDHIK ddPTM_HeLa_A485_30min_R1 2 EATTDFTVDSRPLTQVGGDHIK 22 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 292.19 1.62E-77 98362000 66995 86773 75772 74065 121240 105258 142353 172798 87035 113346 FALSE FALSE TRUE 81897.80662 96920.34753 103803.2159 78110.98341 109168.9199 110769.1461 111938.1186 130419.0196 104502.1262 85090.92818 0.962474007 1.139020923 1.219909315 0.917970753 1.282967788 1.301773861 1.315511783 1.532701809 1.228123002 1 16.37671771 -5.888385282 8.234091577 1.309205609 1.077411146 0.330418709 0.14664082 0.265672468 18.26085868 0.044159207 0.050150316 1.29E-06 5.888385282 -0.231794463 EATTDFTVDSRPLTQVGGDHIK ddPTM_HeLa_A486_30min_R1 1 EATTDFTVDSRPLTQVGGDHIK 22 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 179.42 1.72E-23 37479000 26686 32114 23293 11365 42949 31846 40492 37611 29104 36778 FALSE FALSE TRUE 24815.44921 29569.16968 32312.67341 26458.29436 37561.93594 27917.16431 30360.47332 29047.79634 31626.75815 27568.54942 0.900136196 1.072568935 1.172084643 0.959727476 1.362492287 1.012645384 1.101272064 1.053657046 1.14720429 1 14.75073574 -4.282779723 3.862309898 1.105110367 0.884238016 0.235211203 0.107718792 0.310619971 9.208942186 0.025500933 0.187154783 5.21E-05 4.282779723 -0.220872352 EATTEFSVDAR ddPTM_HeLa_A485_30min_R1 2 EATTEFSVDAR 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 208.66 2.52E-14 77986000 32396 33960 36217 42541 54564 34221 46969 48729 37874 59521 FALSE FALSE TRUE 39602.37844 37931.32659 49615.17542 44864.90711 49131.41657 36012.75864 36933.68945 36778.13635 45474.9644 44683.5101 0.886286201 0.848888695 1.110368798 1.004059596 1.099542459 0.805951873 0.826561955 0.823080735 1.017712447 1 15.4474549 -6.273465636 24.99192601 0.879347737 0.989486356 0.173326095 0.10119106 1261.627884 2621799.292 0.036902748 0.032789075 5.33E-07 6.273465636 0.110138619 EAVATIMS(ph)GSK ddPTM_HeLa_A485_30min_R1 1 EAVATIMSGSK 11 0 O43663-2;O43663-4;O43663;O43663-3 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 EAVATIMS(1)GSK 167.22 1.15E-09 0 278250 275390 215230 287170 335450 304710 330540 356600 227010 404880 TRUE FALSE FALSE 340145.7525 307594.4649 294852.5335 302857.3699 302051.4202 320664.1444 259917.4287 269143.2909 272568.8247 303950.8673 1.119081369 1.011987456 0.970066433 0.996402388 0.993750809 1.054986772 0.855129749 0.885482885 0.89675291 1 18.21347861 -6.758990681 24.99999993 0.899798288 1.018683312 0.534498867 0.052128786 49.34591237 503805.393 0.020463867 0.015095423 1.74E-07 6.758990681 0.118885025 EAVATIMS(ph)GSK ddPTM_HeLa_A486_30min_R1 1 EAVATIMSGSK 11 0 O43663-2;O43663-4;O43663;O43663-3 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 EAVATIMS(0.992)GS(0.007)K 147.7 3.01E-06 0 484790 430590 229540 175320 396650 447850 532140 446340 338920 558270 TRUE FALSE FALSE 450808.7245 396468.4802 318424.0353 408153.8202 346898.4584 392598.8204 398992.9436 344718.1255 368297.8585 418475.5583 1.077264169 0.947411318 0.760914297 0.975334908 0.828957514 0.938164279 0.953443841 0.823747334 0.880094073 1 18.67478384 -4.349870454 3.854728095 0.89111972 1.081325119 0.366501807 0.071556501 0.21839924 5.350246133 0.017045575 0.094746934 4.47E-05 4.349870454 0.190205399 EAVREGS(ph)PANWK ddPTM_HeLa_A485_30min_R1 4 EAVREGSPANWK 12 1 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EAVREGS(1)PANWK;EAVREGS(1)PANWK;EAVREGS(1)PANWK;EAVREGS(1)PANWK ;;; 117.97 9.46E-05 1836320000 619430 1257730 1034030 586600 2182170 2009680 2670850 5120100 1137380 1049390 TRUE FALSE FALSE 757220.0665 1404810.583 1416560.727 618644.4727 1964905.493 2114903.737 2100201.079 3864387.447 1365641.733 787796.3856 0.961187536 1.783215319 1.798130523 0.785284731 2.49417937 2.684581671 2.665918652 4.905312486 1.73349581 1 19.58746327 -5.907714629 5.641498738 2.820037402 1.402964548 0.262145659 0.988570148 0.252161795 12.39993664 0.301303799 0.343059883 1.24E-06 5.907714629 -1.417072855 EAVREGS(ph)PANWK ddPTM_HeLa_A486_30min_R1 2 EAVREGSPANWK 12 1 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EAVREGS(1)PANWK;EAVREGS(1)PANWK ; 98.633 0.0005977 287290000 544770 402770 479940 351910 1204180 520620 926570 1150810 334100 729690 TRUE FALSE FALSE 506584.4362 370853.0383 665785.6212 819264.2645 1053140.516 456391.1977 694732.3857 888795.685 363060.057 546970.8745 0.926163457 0.678012405 1.217223169 1.497820639 1.925405108 0.834397623 1.270145118 1.624941521 0.66376488 1 19.06110449 -4.84732471 5.70749269 1.29955061 0.804983615 0.197339866 0.357946027 0.275014005 14.02026268 0.093384805 0.201980963 1.42E-05 4.84732471 -0.494566994 EAVVDLHADDS(ph)RISEDETERNGDDGTHDK ddPTM_HeLa_A485_30min_R1 1 EAVVDLHADDSRISEDETERNGDDGTHDK 29 2 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.519)RIS(0.468)EDET(0.012)ERNGDDGTHDK 73.24 0.0026057 174570000 53024 50359 44425 67719 84730 70621 92910 107860 57416 96297 TRUE FALSE FALSE 64819.00587 56248.04698 60859.65618 71418.3175 76293.98369 74318.60636 73059.0195 81407.16588 68938.86455 72291.93011 0.896628514 0.778068131 0.841859611 0.987915489 1.055359617 1.028034612 1.010610996 1.126089257 0.953617706 1 16.14154699 -5.327062371 3.304884069 1.033538218 0.829846709 0.747498012 0.049426356 0.108721665 2.343903866 0.013639729 0.022129208 4.71E-06 5.327062371 -0.203691509 EAVVDLHADDS(ph)RISEDETERNGDDGTHDK ddPTM_HeLa_A486_30min_R1 1 EAVVDLHADDSRISEDETERNGDDGTHDK 29 2 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.599)RIS(0.4)EDETERNGDDGTHDK 188.67 4.39E-21 834010000 213520 234550 166230 136400 303480 268760 356370 386770 195390 304690 TRUE FALSE FALSE 198553.3506 215963.4038 230598.7078 317546.0933 265414.7086 235603.1238 267202.4567 298710.9141 212326.5625 228393.6408 0.869347106 0.94557538 1.009654678 1.390345599 1.162093251 1.031566041 1.169920738 1.307877545 0.929651814 1 17.80116296 -5.01229908 19.22869765 1.15560869 0.924997846 0.340254696 0.131419823 28.6417006 44786.07861 0.034607608 0.064426032 9.72E-06 5.01229908 -0.230610844 EAVVDLHADDSRIS(ph)EDETER ddPTM_HeLa_A485_30min_R1 5 EAVVDLHADDSRISEDETER 20 1 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.001)RIS(0.999)EDETER;EAVVDLHADDSRIS(0.999)EDET(0.001)ER;EAVVDLHADDS(0.178)RIS(0.821)EDETER;EAVVDLHADDS(0.012)RIS(0.988)EDETER;EAVVDLHADDS(0.006)RIS(0.994)EDETER ;;;; 273.46 1.23E-72 8720700000 1488949 1983252 1846580 1707180 1944783 1635183 1909112 1670923 1713518 2159853 TRUE FALSE FALSE 1820160.568 2215176.069 2529706.785 1800438.921 1751153.576 1720798.653 1501214.625 1261126.514 2057405.345 1621441.396 1.12255711 1.366177078 1.560159245 1.110394076 1.079998068 1.061277119 0.925851917 0.777781126 1.268874318 1 20.62884545 -5.466075274 5.412717177 1.011776685 1.352270957 0.484346085 0.152385418 0.176935504 11.0612943 0.044337831 0.065225234 3.42E-06 5.466075274 0.340494272 EAVVDLHADDSRIS(ph)EDETER ddPTM_HeLa_A486_30min_R1 6 EAVVDLHADDSRISEDETER 20 1 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.04)RIS(0.96)EDETER;EAVVDLHADDS(0.021)RIS(0.979)EDETER;EAVVDLHADDS(0.005)RIS(0.994)EDETER;EAVVDLHADDS(0.216)RIS(0.783)EDETER;EAVVDLHADDSRIS(1)EDETER;EAVVDLHADDS(0.007)RIS(0.993)EDETER ;;;;; 219.22 1.58E-35 5369220000 2557422 2713810 2179121 767521 2386378 2477146 2519054 2426461 2367579 2554943 TRUE FALSE FALSE 2378159.924 2498757.812 3022935.01 1786827.676 2087056.219 2171540.912 1888760.045 1874008.8 2572802.654 1915168.643 1.241749615 1.304719468 1.578417139 0.93298712 1.089750622 1.13386407 0.986210824 0.978508502 1.343381777 1 20.86904001 -5.270563144 24.99941133 1.065935115 1.367937819 0.522773785 0.135056205 505.1483264 1384122.021 0.037467855 0.056455648 5.36E-06 5.270563144 0.302002704 EAVVDLHADDSRIS(ph)EDETERNGDDGTHDK ddPTM_HeLa_A485_30min_R1 2 EAVVDLHADDSRISEDETERNGDDGTHDK 29 2 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.016)RIS(0.984)EDETERNGDDGTHDK;EAVVDLHADDS(0.128)RIS(0.866)EDET(0.005)ERNGDDGTHDK ; 209.56 2.30E-29 9568500000 557370 633460 543270 811970 909860 899570 1272700 1259590 721080 1095790 TRUE FALSE FALSE 681355.0336 707537.6366 744248.1804 856325.8651 819271.1437 946670.0942 1000777.248 950673.5775 865794.1419 822629.7195 0.828264549 0.860092481 0.904718323 1.040961498 0.995917269 1.150785185 1.216558586 1.155651875 1.052471265 1 19.64988367 -5.361259897 1.060017296 1.125660507 0.824130794 0.733760073 0.063663998 0.286841174 0.626278268 0.025440921 0.063835381 4.35E-06 5.361259897 -0.301529713 EAVVDLHADDSRIS(ph)EDETERNGDDGTHDK ddPTM_HeLa_A486_30min_R1 6 EAVVDLHADDSRISEDETERNGDDGTHDK 29 2 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.139)RIS(0.859)EDET(0.002)ERNGDDGTHDK;EAVVDLHADDS(0.053)RIS(0.94)EDET(0.007)ERNGDDGTHDK;EAVVDLHADDS(0.151)RIS(0.844)EDET(0.004)ERNGDDGTHDK;EAVVDLHADDS(0.151)RIS(0.699)EDET(0.151)ERNGDDGTHDK;EAVVDLHADDS(0.144)RIS(0.85)EDET(0.006)ERNGDDGTHDK;EAVVDLHADDS(0.008)RIS(0.992)EDETERNGDDGTHDK ;;;;; 204.68 4.22E-29 12539922000 1301130 1102085 791346 711933 1510540 1484080 1842930 1808890 909761 1760660 TRUE FALSE FALSE 1209927.506 1014751.771 1097776.364 1657416.003 1321073.988 1300989.299 1381809.421 1397045.235 988619.816 1319779.276 0.916765044 0.76887991 0.831787848 1.255828178 1.000981006 0.985762788 1.047000394 1.058544607 0.749079664 1 20.33186524 -5.100294312 24.76377863 1.018135467 0.831997079 0.306876165 0.120081701 40.99054572 10111.74052 0.03209186 0.055584765 7.94E-06 5.100294312 -0.186138389 EAWDIES(ph)TPIMMK ddPTM_HeLa_A485_30min_R1 1 EAWDIESTPIMMK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 EAWDIES(0.597)T(0.403)PIMMK 104.22 0.00041218 0 80606 74364 64048 93383 113820 88450 126320 105000 66241 110610 TRUE FALSE FALSE 98536.52661 83060.22292 87742.02046 98484.27683 102487.6812 93081.10523 99330.70006 79248.58537 79534.9611 83036.96263 1.18665861 1.00028012 1.05666221 1.186029374 1.234241691 1.120959899 1.196222705 0.954377218 0.957825992 1 16.34146605 -7.271628586 24.5029898 0.967076178 1.136205274 0.574082468 0.066788617 439.5039006 1056910.577 0.039120657 0.019137517 5.35E-08 7.271628586 0.169129096 EAWDIES(ph)TPIMMK ddPTM_HeLa_A486_30min_R1 1 EAWDIESTPIMMK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 EAWDIES(0.596)T(0.404)PIMMK 112.75 0.00027473 0 130710 140420 85528 53400 158730 141190 156300 148760 112290 146530 TRUE FALSE FALSE 121547.904 129292.6078 118646.7321 124317.8987 138820.6033 123771.4133 117192.0868 114890.5954 122023.3876 109837.9342 1.106611343 1.177121626 1.080198139 1.131830269 1.263867572 1.12685489 1.066954578 1.046001058 1.1109403 1 16.74501687 -6.7099199 4.203683279 1.058939362 1.152075445 0.430025831 0.05224002 0.222237456 8.115513444 0.02173826 0.015969838 1.95E-07 6.7099199 0.093136084 EAYPGDVFYLHSR ddPTM_HeLa_A485_30min_R1 1 EAYPGDVFYLHSR 13 0 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 110.98 0.00076205 25662000 16637 20523 23149 11753 27219 20740 22090 23667 17481 21777 FALSE FALSE TRUE 20337.84325 22922.98632 31712.77841 12395.03663 24508.98079 21825.91433 17370.29104 17862.63114 20989.27635 16348.39468 1.244026931 1.402155183 1.939809935 0.758180658 1.499167427 1.335049389 1.062507444 1.092622945 1.283873846 1 13.99686136 -6.277663189 0.54521626 1.076716587 1.457472743 0.154479615 0.280780924 1.827097352 1.170154319 0.243921724 0.293754627 5.28E-07 6.277663189 0.380756157 EAYSGCSGPVDSECPPPPS(ph)SPVHK ddPTM_HeLa_A485_30min_R1 1 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.638)S(0.362)PVHK 251.19 5.41E-50 2401500000 375900 296760 332600 579210 624570 284100 497390 290820 426070 737000 TRUE FALSE FALSE 459517.6582 331463.5005 455642.5806 610850.7757 562385.6178 298975.0367 391118.5632 219495.939 511578.3409 553279.4635 0.830534456 0.599088747 0.823530622 1.10405467 1.016458508 0.540368939 0.706909598 0.39671803 0.924629188 1 19.07764885 -6.263580659 24.98709299 0.67559406 0.869315278 0.120809688 0.204370339 360.3984366 4205550.864 0.071756638 0.066408532 5.45E-07 6.263580659 0.193721218 EAYSGCSGPVDSECPPPPS(ph)SPVHK ddPTM_HeLa_A486_30min_R1 2 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.592)S(0.408)PVHK;EAYSGCSGPVDSECPPPPS(0.634)S(0.366)PVHK ; 207.97 6.24E-29 7045600000 564330 870070 550330 241354 769020 808240 1005680 921610 602330 650280 TRUE FALSE FALSE 524773.3812 801122.4845 763432.5143 561884.3094 672562.3408 708527.5664 754048.227 711779.5216 654540.4494 487445.6554 1.076578231 1.643511386 1.566190007 1.152711699 1.379768869 1.453551916 1.546938041 1.460223337 1.342796765 1 18.89488186 -8.145673688 4.459399605 1.000017765 1.4188352 0.346608856 0.167651018 1.299787723 38.50889597 0.160323009 0.041920716 7.15E-09 8.145673688 0.418817435 EAYSGCSGPVDSECPPPPS(ph)SPVHKAELEK ddPTM_HeLa_A485_30min_R1 1 EAYSGCSGPVDSECPPPPSSPVHKAELEK 29 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.5)S(0.5)PVHKAELEK 130.33 2.29E-06 856080000 228020 172700 119910 240360 381190 290700 457110 549450 230270 435310 TRUE FALSE FALSE 278742.2623 192895.7627 164269.6989 253490.2582 343237.3852 305920.6025 359444.7143 414696.526 276483.0768 326795.2283 0.852956954 0.59026493 0.502668597 0.775685311 1.050313332 0.936123223 1.099908087 1.268979747 0.8460438 1 18.31802739 -5.64530341 3.496625858 1.046969444 0.641265993 0.637533723 0.132424152 0.14378734 3.410699063 0.04095575 0.05401761 2.26E-06 5.64530341 -0.405703451 EAYSGCSGPVDSECPPPPS(ph)SPVHKAELEKK ddPTM_HeLa_A485_30min_R1 1 EAYSGCSGPVDSECPPPPSSPVHKAELEKK 30 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDS(0.002)ECPPPPS(0.499)S(0.499)PVHKAELEKK 69.873 0.0013564 138090000 20985 17180 7274.1 23821 37907 34506 57232 71834 19027 36131 TRUE FALSE FALSE 25653.04085 19189.05155 9965.092291 25122.28091 34132.84598 36312.6808 45003.91566 54216.59887 22845.54437 27124.20664 0.945761887 0.707451164 0.36738742 0.926194128 1.258390575 1.338755499 1.659179059 1.998827084 0.842256685 1 14.72729332 -5.751732173 2.330870465 1.439907333 0.672694375 0.454662185 0.332205843 0.241814693 2.694669714 0.110043916 0.141244588 1.77E-06 5.751732173 -0.767212958 EAYSGCSGPVDSECPPPPSS(ph)PVHK ddPTM_HeLa_A485_30min_R1 2 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.208)S(0.792)PVHK;EAYSGCSGPVDSECPPPPS(0.288)S(0.712)PVHK ; 192.62 4.31E-21 3179030000 622750 452895 456378 778780 914130 477175 658250 426755 659822 1083850 TRUE FALSE FALSE 761278.589 505857.1306 625211.2137 821322.7794 823116.0075 502159.1451 517609.5101 322092.6671 792242.2232 813666.1418 0.93561542 0.621701094 0.768387895 1.009410048 1.011613935 0.61715625 0.636144831 0.395853595 0.97366989 1 19.63407743 -6.281054794 24.82445082 0.681279505 0.857760249 0.097726963 0.197770875 1472.496074 1863523.429 0.069825586 0.061667118 5.24E-07 6.281054794 0.176480744 EAYSGCSGPVDSECPPPPSS(ph)PVHK ddPTM_HeLa_A486_30min_R1 4 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.185)S(0.815)PVHK;EAYSGCSGPVDSECPPPPS(0.182)S(0.818)PVHK;EAYSGCSGPVDSECPPPPS(0.188)S(0.812)PVHK;EAYSGCSGPVDSECPPPPS(0.157)S(0.843)PVHK ;;; 206.48 1.28E-28 1297860000 333707 501230 341919 142666 484550 519260 620420 553810 403530 434010 TRUE FALSE FALSE 310315.8626 461510.7094 474319.1937 332133.6579 423773.2208 455198.9806 465184.3539 427719.5526 438508.3053 325331.0711 0.953846374 1.418587864 1.457958479 1.020909736 1.302590679 1.399186924 1.429879883 1.314720882 1.347883262 1 18.31154909 -4.250579243 24.3808473 1.31251249 0.953846082 0.307650335 0.154189732 1344.042184 3017273.601 0.037634764 0.527500849 5.62E-05 4.250579243 -0.358666408 EAYSGCSGPVDSECPPPPSS(ph)PVHKAELEK ddPTM_HeLa_A486_30min_R1 1 EAYSGCSGPVDSECPPPPSSPVHKAELEK 29 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.215)S(0.785)PVHKAELEK 150.07 1.35E-09 395560000 223850 287790 114610 189770 352190 307140 484850 463940 176180 388390 TRUE FALSE FALSE 208159.271 264984.4723 158990.0614 441794.1504 308015.0462 269248.1896 363535.4018 358310.9897 191451.4243 291134.616 0.714993201 0.910178514 0.546104972 1.517490969 1.057981529 0.924823689 1.24868491 1.230739905 0.657604468 1 18.15132686 -5.236041908 24.98607567 1.098925345 0.742400878 0.351921384 0.227809373 876.0200984 861829.0187 0.060524277 0.104780194 5.81E-06 5.236041908 -0.356524467 ECEEEAINIQSTAPEEEHES(ph)PR ddPTM_HeLa_A485_30min_R1 1 ECEEEAINIQSTAPEEEHESPR 22 0 P46939;P46939-2 P46939 UTRN Utrophin 1 0 ECEEEAINIQSTAPEEEHES(1)PR 201.95 5.76E-27 362150000 167230 177620 150990 162870 183380 178560 203280 186850 168690 254000 TRUE FALSE FALSE 204429.7366 198391.1139 206847.4842 171767.1757 165122.0433 187909.1255 159847.5674 141024.7445 202544.5357 190682.4745 1.072095047 1.040426575 1.084774491 0.900802112 0.865952908 0.985455669 0.838291866 0.739578951 1.06220845 1 17.54081273 -5.266424393 23.75837223 0.900256208 1.063231498 0.38770579 0.086794474 194.0288329 924736.7103 0.023793886 0.036607412 5.41E-06 5.266424393 0.162975291 ECINAAPDS(ph)PSK ddPTM_HeLa_A485_30min_R1 3 ECINAAPDSPSK 12 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 ECINAAPDS(0.938)PS(0.062)K;ECINAAPDS(0.794)PS(0.206)K;ECINAAPDS(0.995)PS(0.005)K ;; 272.96 3.59E-54 2058740000 2623750 2093420 1544190 4005340 2773200 2147850 3478980 2560570 2013780 5020490 TRUE FALSE FALSE 3207394.136 2338227.259 2115450.14 4224141.582 2497090.471 2260308.105 2735667.502 1932586.193 2417927.175 3768974.238 0.85099922 0.620388231 0.561280074 1.120766902 0.662538482 0.599714395 0.725838737 0.512761847 0.641534545 1 21.8457405 ECINAAPDS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 ECINAAPDSPSK 12 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 ECINAAPDS(0.998)PS(0.002)K;ECINAAPDS(0.987)PS(0.013)K ; 256.35 3.08E-42 1158400000 3037700 2942400 1399540 1339080 2409900 3095300 3861900 3450300 2343900 4541500 TRUE FALSE FALSE 2824772.917 2709233.508 1941479.369 3117445.913 2107627.871 2713433.357 2895611.773 2664742.01 2547071.139 3404278.84 0.829771311 0.795831844 0.570305624 0.91574341 0.619111409 0.797065541 0.850580081 0.782762557 0.748196978 1 21.69891778 -14 0.285849076 2.778712122 0.752337548 0.335674061 0.097979348 270.6132909 2.57337631 286.1960489 0.104565915 1.00E-14 14 -2.026374573 ECINAAPDS(ph)PSKQLPDQISFFSGNPSVEIVHGIMHLYK ddPTM_HeLa_A485_30min_R1 2 ECINAAPDSPSKQLPDQISFFSGNPSVEIVHGIMHLYK 38 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 ECINAAPDS(0.969)PS(0.031)KQLPDQISFFSGNPSVEIVHGIMHLYK;ECINAAPDS(0.5)PS(0.5)KQLPDQISFFSGNPSVEIVHGIMHLYK ; 172.03 4.00E-15 161197000 81594 77459 54709 101986 128665 135471 219663 263656 76398 168763 TRUE FALSE FALSE 99744.3038 86517.15625 74948.13573 107557.2369 115854.6608 142564.0521 172730.2056 198993.9526 91730.37784 126693.49 0.787288312 0.682885571 0.591570536 0.848956304 0.914448413 1.125267385 1.363370806 1.570672279 0.72403387 1 16.95098287 -6.005956186 1.720875005 1.211978485 0.698574257 0.464754995 0.216656514 0.292920126 1.756243108 0.083110847 0.091436582 9.86E-07 6.005956186 -0.513404229 ECINAAPDS(ph)PSKQLPDQISFFSGNPSVEIVHGIMHLYK ddPTM_HeLa_A486_30min_R1 1 ECINAAPDSPSKQLPDQISFFSGNPSVEIVHGIMHLYK 38 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 ECINAAPDS(0.65)PS(0.341)KQLPDQIS(0.003)FFS(0.003)GNPS(0.003)VEIVHGIMHLYK 53.687 0.010218 34698000 16005 14831 9495.7 9583.2 23765 21644 34554 28891 13203 25679 TRUE FALSE FALSE 14883.13215 13655.73755 13172.68934 22310.17391 20784.1721 18973.78334 25908.22373 22313.14999 14347.44667 19248.81126 0.773197469 0.709432773 0.68433781 1.159041647 1.07976393 0.985711953 1.345964869 1.159196258 0.745367934 1 14.23248173 -5.257660817 24.97409239 1.08315737 0.721033671 0.536346313 0.14674275 242.8485961 1605080.995 0.040890747 0.067498688 5.53E-06 5.257660817 -0.362123698 ECLPLIIFLR ddPTM_HeLa_A485_30min_R1 1 ECLPLIIFLR 10 0 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 104.44 0.01289 23224000 62337 46328 45695 41208 65910 42565 42362 43542 20663 37922 FALSE FALSE TRUE 76203.65059 51745.6566 62599.48203 43459.0887 59347.76898 44793.63758 33311.01263 32863.25623 24809.87457 28468.7433 2.676747961 1.817630517 2.198884628 1.526554517 2.084664165 1.573432206 1.17009073 1.15436273 0.871477687 1 14.79709119 -6.142702544 0.458546141 0.84226877 2.43363726 0.78323286 0.258388914 0.568005309 0.246530606 0.238402778 0.383994438 7.20E-07 6.142702544 1.59136849 up ECPDQLGPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ECPDQLGPSPK 11 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 ECPDQLGPS(1)PK;ECPDQLGPS(1)PK ; 146.77 8.50E-07 249830000 501110 439300 321870 891730 677090 512500 806170 745150 419710 1083040 TRUE FALSE FALSE 612580.1907 490672.3136 440943.1071 940442.9519 609676.5422 539333.7075 633925.1937 562400.7942 503941.9472 813058.0599 0.753427364 0.603489883 0.542326716 1.156673795 0.749856096 0.663339722 0.779680105 0.691710496 0.61981053 1 19.63299885 -11.31877361 2.251120197 2.402083407 0.731412383 0.205939391 0.159619718 9100366.803 1135663.448 65044204.68 0.041822901 4.80E-12 11.31877361 -1.670671023 ECPDQLGPS(ph)PK ddPTM_HeLa_A486_30min_R1 4 ECPDQLGPSPK 11 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 ECPDQLGPS(1)PK;ECPDQLGPS(1)PK;ECPDQLGPS(1)PK;ECPDQLGPS(1)PK ;;; 179.27 2.16E-10 236680000 750720 769260 360191 509930 701940 824090 1084830 957190 595890 1410410 TRUE FALSE FALSE 698098.4047 708301.036 499666.6014 1187142.81 613896.1399 722422.1545 813394.0598 739258.7323 647542.225 1057234.156 0.660306329 0.669956634 0.472616779 1.122875953 0.580662417 0.683313295 0.769360369 0.699238412 0.612487046 1 20.01186351 -11.05219101 2.643718117 1.411771578 0.700308105 0.241191587 0.161249525 26616572.4 8348258.974 66346326.44 0.039538887 8.87E-12 11.05219101 -0.711463474 ECPSDECGAGVFMASHFDR ddPTM_HeLa_A485_30min_R1 3 ECPSDECGAGVFMASHFDR 19 0 P62979;A0A2R8Y422 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 0 ;; ;; 244.97 1.09E-37 278278000 81994.3 115685.8 156988 91893.5 165792 107315.1 125918 124523 120964 146556 FALSE FALSE TRUE 100233.6492 129214.248 215064.394 96913.40922 149285.1663 112933.9527 99014.59064 93983.53901 145240.3653 110022.2864 0.911030415 1.174437037 1.954734819 0.880852529 1.356862971 1.026464332 0.899950309 0.854222741 1.3200995 1 16.74743626 -6.322969499 6.978607894 1.002034593 1.268877245 0.131483896 0.299929882 0.519064941 50.30408448 0.106841115 0.094314858 4.75E-07 6.322969499 0.266842652 ECPSDECGAGVFMASHFDR ddPTM_HeLa_A486_30min_R1 2 ECPSDECGAGVFMASHFDR 19 0 P62979;A0A2R8Y422 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 0 ; ; 139.11 2.87E-06 469360000 177823 206655 172547 68335 251292 185357 230910 235960 161890 204556 FALSE FALSE TRUE 165358.526 190278.9052 239361.8194 159087.3335 219772.6142 162489.5379 173133.8757 182237.059 175922.7555 153333.8462 1.078421563 1.240945231 1.561050123 1.037522618 1.433294864 1.059710833 1.129130195 1.188498584 1.147318482 1 17.22631666 -6.289891101 24.75329893 1.118225187 1.271845672 0.229566985 0.150427697 1063.318447 925094.7187 0.05173141 0.045631022 5.13E-07 6.289891101 0.153620485 ECS(ph)PTSSLER ddPTM_HeLa_A485_30min_R1 1 ECSPTSSLER 10 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 ECS(0.803)PT(0.146)S(0.038)S(0.013)LER 57.885 0.034121 488090000 1568500 1167600 649600 2378700 1092700 1246700 2037700 1781500 880040 2519400 TRUE FALSE FALSE 1917407.414 1304140.663 889914.0721 2508642.358 983906.9513 1311975.284 1602328.749 1344584.332 1056655.956 1891359.946 1.013771819 0.689525368 0.470515448 1.326369612 0.520211371 0.69366769 0.847183399 0.710908748 0.558675232 1 20.85099252 ECS(ph)PTSSLER ddPTM_HeLa_A486_30min_R1 1 ECSPTSSLER 10 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 ECS(0.495)PT(0.495)S(0.009)SLER 103.69 0.0011298 809740000 1085400 1268900 806530 486040 1193100 1295600 1492600 1272700 933320 1731800 TRUE FALSE FALSE 1009319.065 1168347.743 1118840.016 1131525.683 1043450.273 1135762.045 1119135.693 982933.9928 1014220.929 1298146.008 0.777508122 0.900012584 0.861875327 0.87164747 0.803800394 0.874910863 0.862103096 0.757182926 0.781284172 1 20.30802123 -5.712320567 24.99959975 0.8366016 0.856787002 0 0.069036623 652.5700607 332128.959 0.019813313 0.025578825 1.94E-06 5.712320567 0.020185402 ECS(ph)VEKGTGDSLR ddPTM_HeLa_A485_30min_R1 3 ECSVEKGTGDSLR 13 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 ECS(0.999)VEKGT(0.001)GDSLR;ECS(1)VEKGTGDSLR;ECS(0.962)VEKGT(0.025)GDS(0.013)LR ;; 159.69 7.16E-10 1791440000 1210830 1429890 1132960 1727880 2471220 2001950 3270920 3753040 1318520 2772750 TRUE FALSE FALSE 1480174.956 1597103.197 1552089.05 1822269.709 2225176.66 2106769.006 2572061.221 2832601.055 1583134.87 2081554.454 0.711091153 0.767264673 0.745639418 0.875436963 1.068997573 1.012113328 1.235644456 1.360810451 0.760554146 1 20.98922987 -5.628808162 1.706805843 1.107551353 0.734911164 0.49828315 0.149322422 0.286330061 1.709670313 0.05119534 0.07647116 2.35E-06 5.628808162 -0.37264019 ECS(ph)VEKGTGDSLR ddPTM_HeLa_A486_30min_R1 4 ECSVEKGTGDSLR 13 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 ECS(0.5)VEKGT(0.5)GDS(0.001)LR;ECS(1)VEKGTGDSLR;ECS(0.991)VEKGT(0.009)GDSLR;ECS(1)VEKGTGDSLR ;;; 186.72 1.38E-17 2369160000 1019970 874731 565278 698156 1332010 1107260 1774580 1871050 719522 1790070 TRUE FALSE FALSE 948475.3701 805414.1298 784168.7803 1625342.451 1164936.885 970657.519 1330561.314 1445052.76 781890.7463 1341824.821 0.706854841 0.600237913 0.584404736 1.211292581 0.8681736 0.723386171 0.99160583 1.07693101 0.582707023 1 20.3557649 -5.215978894 24.99568198 0.917599578 0.627472879 0.384740809 0.168855514 455.4651881 250429.2039 0.045100705 0.078116376 6.08E-06 5.215978894 -0.290126699 ECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 ECSEAMEVETSVISIDSPQK 20 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ECSEAMEVETSVIS(0.001)IDS(0.999)PQK;ECSEAMEVETSVIS(0.001)IDS(0.999)PQK ; 137.73 1.14E-07 130370000 261230 190106 189126 469470 270150 185925 307820 188308 236552 617620 TRUE FALSE FALSE 319339.7123 212337.243 259091.5776 495115.9573 243252.9174 195659.7455 242051.7423 142125.1677 284025.8166 463658.7005 0.688738747 0.457960225 0.55879805 1.067845717 0.52463788 0.421990885 0.522047235 0.306529712 0.61257519 1 18.8227037 -11.21498333 2.030400808 2.178064564 0.568917044 0.305284782 0.192924526 7631533.148 1347965.188 41243803.33 0.056627507 6.10E-12 11.21498333 -1.60914752 ECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 ECSEAMEVETSVISIDSPQK 20 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ECSEAMEVETSVISIDS(1)PQK;ECSEAMEVETSVISIDS(1)PQK ; 147.67 1.29E-09 213600000 319750 320880 169557 256580 214007 367760 403470 352720 275770 498670 TRUE FALSE FALSE 297337.1762 295452.3002 235214.0113 597331.2068 187164.2465 322389.5103 302517.5385 272413.3558 299673.9656 373799.7862 0.795445014 0.790402539 0.629251326 1.597997722 0.500707206 0.862465743 0.809303669 0.728768089 0.801696461 1 18.51190622 ECSEAMEVETSVISIDS(ph)PQKLAILDQELEHK ddPTM_HeLa_A485_30min_R1 2 ECSEAMEVETSVISIDSPQKLAILDQELEHK 31 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ECSEAMEVETSVIS(0.001)IDS(0.999)PQKLAILDQELEHK;ECSEAMEVETSVISIDS(1)PQKLAILDQELEHK ; 302.11 5.01E-93 251330000 186307 148938 85199 282990 191756 187574 319670 247440 152550 413260 TRUE FALSE FALSE 227750.3494 166355.0035 116717.6555 298449.0271 172664.0993 197395.0846 251369.893 186754.952 183165.3857 310241.8875 0.734105737 0.536210648 0.376215012 0.961988175 0.556546702 0.636261874 0.810238408 0.601965626 0.590395408 1 18.24303396 -11.2057382 2.306970452 2.062557265 0.643859094 0.327967545 0.152495507 26151455.79 5113311.846 145031173.7 0.037585946 6.23E-12 11.2057382 -1.418698171 ECSVEKGT(ph)GDSLR ddPTM_HeLa_A485_30min_R1 1 ECSVEKGTGDSLR 13 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 ECS(0.001)VEKGT(0.989)GDS(0.01)LR 241.29 1.26E-34 288240000 185600 212410 148250 280940 381520 298740 478520 543310 214160 424110 TRUE FALSE FALSE 226886.0797 237249.5018 203093.8442 296287.0408 343534.5292 314381.5645 376280.2929 410062.3706 257139.9476 318387.1822 0.712610596 0.745160343 0.63788323 0.930587214 1.078983541 0.987419036 1.181832416 1.287936178 0.807632851 1 18.28042273 -5.476386264 3.13388036 1.07368141 0.703819218 0.629727099 0.122181453 0.158457766 3.106422491 0.036591408 0.05454634 3.34E-06 5.476386264 -0.369862192 EDAANNYAR ddPTM_HeLa_A485_30min_R1 2 EDAANNYAR 9 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;F8VRZ4;F8VS66;F8VWV9;F8VX09;A6NHL2;A6NHL2-2;C9K0S6;P68363;P68363-2;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBAL3;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 204.62 1.14E-11 180121000 91130 98928 103288 103383 134048 88632 105471 97398 100207 140181 FALSE FALSE TRUE 111401.5541 110496.769 141498.5294 109030.5515 120701.7104 93272.63447 82936.25923 73510.98779 120317.6257 105236.4565 1.058583287 1.049985648 1.344577098 1.036053048 1.14695719 0.886314853 0.788094373 0.698531575 1.143307459 1 16.68327505 -6.265954953 19.93928245 0.877210398 1.129949232 0.387909895 0.138742127 22.49214944 99314.78621 0.047435507 0.043472008 5.42E-07 6.265954953 0.252738833 EDAANNYAR ddPTM_HeLa_A486_30min_R1 3 EDAANNYAR 9 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;F8VRZ4;F8VS66;F8VWV9;F8VX09;A6NHL2;A6NHL2-2;C9K0S6;P68363;P68363-2;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBAL3;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 209.84 3.12E-12 70247000 312220 385128.2 357582.1 141856.1 524695 335922.7 397250.4 435520.6 317360.4 351722.6 FALSE FALSE TRUE 290334.9903 354609.2388 496047.4655 330248.1698 458882.8605 294479.9727 297854.1482 336362.0667 344869.455 263648.9716 1.101217989 1.345005204 1.881469374 1.252605568 1.740506924 1.116939584 1.129737569 1.275795102 1.308062963 1 18.00825884 -6.293311939 24.75714064 1.181071108 1.468972044 0.303873175 0.224932189 801.9273275 622897.6179 0.079129133 0.069791768 5.09E-07 6.293311939 0.287900936 EDALDDSVSSSSVHAS(ph)PLAS(ph)SPVRK ddPTM_HeLa_A486_30min_R1 1 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 EDALDDSVSSSSVHAS(1)PLAS(0.553)S(0.447)PVRK 141.38 3.69E-08 104880000 96170 90970 46737 5183.8 68273 75444 75040 71409 71364 56206 TRUE FALSE FALSE 89428.97962 83761.20589 64834.81806 12068.14837 59709.56372 66136.48634 56264.19831 55150.72955 77549.88898 42131.65176 2.122607965 1.98808265 1.538862479 0.286439004 1.417213929 1.569757737 1.335437752 1.309009432 1.84065627 1 15.36261686 -4.836454184 3.993142802 1.265227919 2.068265267 0.399252587 0.3880346 0.216217384 6.603546221 0.106767575 0.252869592 1.46E-05 4.836454184 0.803037348 EDALDDSVSSSSVHASPLAS(ph)SPVRK ddPTM_HeLa_A485_30min_R1 2 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 EDALDDSVSSSSVHASPLAS(0.5)S(0.5)PVRK;EDALDDS(0.001)VS(0.001)SSSVHAS(0.017)PLAS(0.49)S(0.49)PVRK ; 287.66 3.79E-76 951530000 188240 445211 364455 55679.5 442659 196906.9 255726.3 177058.9 265778.8 131518 TRUE FALSE FALSE 230113.3386 497274.5536 499282.0707 58721.1301 398586.3157 207216.6408 201088.2869 133634.9272 319118.1673 98732.98301 2.330663286 5.036559602 5.056892393 0.594746845 4.037012795 2.098758029 2.036688053 1.353498325 3.232133352 1 16.5912445 -5.248735614 24.98870371 2.149352855 4.230890569 0.392554045 1.185933027 777.1110216 1528599.036 0.310713483 0.533656057 5.64E-06 5.248735614 2.081537714 EDALDDSVSSSSVHASPLAS(ph)SPVRK ddPTM_HeLa_A486_30min_R1 1 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 EDALDDSVSSSSVHAS(0.032)PLAS(0.833)S(0.135)PVRK 269.81 1.21E-62 603550000 455480 475580 343170 8779.6 433660 198000 206290 196390 465040 55528 TRUE FALSE FALSE 423553.2041 437893.3088 476054.6144 20439.3525 379266.3191 173572.7731 154674.0601 151676.2842 505350.0416 41623.42737 10.1758368 10.52035684 11.4371796 0.491054048 9.111847414 4.17007402 3.71603373 3.644012368 12.14100024 1 15.34510814 -5.23183196 24.97471449 5.102667615 10.69204895 0.392403613 3.308804295 720.1656491 607479.7488 0.856717071 1.483594484 5.86E-06 5.23183196 5.589381334 EDALDDSVSSSSVHASPLASS(ph)PVRK ddPTM_HeLa_A485_30min_R1 1 EDALDDSVSSSSVHASPLASSPVRK 25 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;Q99666;O14715 P49792;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 EDALDDSVSSSSVHASPLAS(0.111)S(0.889)PVRK 279.23 2.15E-75 756550000 268690 596850 486280 74965 601810 270870 301140 300830 437450 154180 TRUE FALSE FALSE 328459.1635 666646.4156 666175.2078 79060.14813 541891.6833 285052.3344 236798.9789 227050.9708 525242.2025 115745.7635 2.837764024 5.759575086 5.755504027 0.683050038 4.681740973 2.462745295 2.045854395 1.96163526 4.537895701 1 16.82059986 -5.244432457 24.9970208 2.594614114 4.881810496 0.346650906 1.440848472 916.3671112 1346887.871 0.376169707 0.649455002 5.70E-06 5.244432457 2.287196382 EDAS(ph)PLPHVCCCK ddPTM_HeLa_A485_30min_R1 1 EDASPLPHVCCCK 13 0 C9J7Z4;Q8NCE0-5;Q8NCE0-3;Q8NCE0-2;Q8NCE0 C9J7Z4 TSEN2 tRNA-splicing endonuclease subunit Sen2 1 0 EDAS(1)PLPHVCCCK 110.38 0.00023054 225240000 742410 705160 568370 926100 850390 693080 877400 859790 631260 1125300 TRUE FALSE FALSE 907556.5432 787622.3279 778633.7148 976690.498 765722.1857 729368.5971 689936.3223 648925.1544 757948.0917 844783.4196 1.074306766 0.932336395 0.921696256 1.156143072 0.906412422 0.863379394 0.816702016 0.768155647 0.897209952 1 19.68822199 -5.987689889 24.96512165 0.855055013 1.010627254 0.416393329 0.084348059 213.3716398 432718.7499 0.025974653 0.029433597 1.03E-06 5.987689889 0.155572241 EDAS(ph)PLPHVCCCK ddPTM_HeLa_A486_30min_R1 3 EDASPLPHVCCCK 13 0 C9J7Z4;Q8NCE0-5;Q8NCE0-3;Q8NCE0-2;Q8NCE0 C9J7Z4 TSEN2 tRNA-splicing endonuclease subunit Sen2 1 0 EDAS(1)PLPHVCCCK;EDAS(1)PLPHVCCCK;EDAS(1)PLPHVCCCK ;; 147.12 5.90E-08 474400000 1243110 1413230 731410 439000 1167300 1359100 1477390 1373990 1093780 1548990 TRUE FALSE FALSE 1155974.408 1301240.508 1014631.54 1022014.186 1020886.349 1191428.06 1107731.396 1061162.471 1188589.731 1161112.822 0.995574579 1.120683954 0.873844058 0.880202308 0.879230967 1.026108779 0.954025634 0.913918485 1.023664289 1 20.14707673 -4.76052585 24.99999999 0.939516777 1.058129262 0.350667411 0.061963441 24.4330686 668544.1998 0.016210418 0.038159967 1.74E-05 4.76052585 0.118612485 EDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_HeLa_A485_30min_R1 9 EDDDVIVNKPHVSDEEEEEPPFYHHPFK 28 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-10 SON Protein SON 1 0 EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK ;;;;;;;; 196.85 5.98E-23 28190110000 5840382 3908808 2518906 8855539 4567705 4712612 7238393 5750777 3705974 10050939 TRUE FALSE FALSE 7139554.827 4365909.093 3450754.15 9339294.672 4112928.252 4959357.077 5691851.203 4340389.924 4449728.989 7545424.881 0.946209781 0.578616733 0.457330661 1.237742714 0.54508902 0.657266775 0.754344691 0.575234661 0.589725437 1 22.84717071 -10.15954888 5.081185517 1.000015564 0.700891373 0.140440879 0.219053784 3.89E-05 6.43E-06 0.207062742 0.050217399 6.93E-11 10.15954888 -0.299124191 EDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_HeLa_A486_30min_R1 6 EDDDVIVNKPHVSDEEEEEPPFYHHPFK 28 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-10 SON Protein SON 1 0 EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;EDDDVIVNKPHVS(0.994)DEEEEEPPFY(0.006)HHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK ;;;;; 252.78 2.30E-63 20794550000 7333230 6920980 2744937 3374281 5110070 8549330 9826520 8416580 5838950 11399140 TRUE FALSE FALSE 6819208.446 6372536.339 3807850.118 7855496.695 4469117.371 7494600.588 7367820.762 6500308.467 6345074.887 8544721.148 0.79806097 0.745786343 0.445637728 0.919339152 0.523026708 0.877103004 0.862265794 0.760739684 0.742572493 1 23.02660198 -6.305193587 24.99835275 0.83444055 0.689239563 0.245541268 0.141007053 748.9851478 427919.9529 0.047819842 0.042173363 4.95E-07 6.305193587 -0.145200987 EDEEES(ph)LNEVGYDDIGGCRK ddPTM_HeLa_A485_30min_R1 1 EDEEESLNEVGYDDIGGCRK 20 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 EDEEES(1)LNEVGYDDIGGCRK 125.11 3.99E-07 323230000 47629 41654 32856 68614 54089 56904 72839 68649 40111 90964 TRUE FALSE FALSE 58223.90673 46525.07296 45010.80165 72362.20908 48703.70924 59883.40545 57276.35261 51812.72511 48160.90978 68288.34887 0.852618458 0.681303234 0.659128569 1.059656739 0.713206719 0.876919803 0.838742678 0.758734484 0.70525808 1 16.05935183 -11.53213238 2.236891038 4.180441361 0.794835252 0.227895346 0.113767939 4194813.589 442481.0851 67797719.27 0.029440371 2.94E-12 11.53213238 -3.385606109 EDEGPPGYPEPLAPGHGS(ph)PFPSLSK ddPTM_HeLa_A485_30min_R1 1 EDEGPPGYPEPLAPGHGSPFPSLSK 25 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 EDEGPPGYPEPLAPGHGS(0.995)PFPS(0.005)LSK 138.34 1.06E-06 244590000 176460 119160 89611 221070 135640 107990 157450 92262 95691 272210 TRUE FALSE FALSE 215712.9182 133094.7254 122761.8379 233146.4943 122135.2053 113644.1894 123809.5213 69634.59984 114895.306 204353.0567 1.055589389 0.651297943 0.600734043 1.14090045 0.597667622 0.556116905 0.605860873 0.340756341 0.562239234 1 17.6407043 -5.961491489 24.99481824 0.571961947 0.833510576 0.230425911 0.216647463 225.2658349 146212.9288 0.065455374 0.074219302 1.09E-06 5.961491489 0.261548628 EDEGPPGYPEPLAPGHGS(ph)PFPSLSK ddPTM_HeLa_A486_30min_R1 3 EDEGPPGYPEPLAPGHGSPFPSLSK 25 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 EDEGPPGYPEPLAPGHGS(0.994)PFPS(0.005)LS(0.001)K;EDEGPPGYPEPLAPGHGS(0.99)PFPS(0.008)LS(0.002)K;EDEGPPGYPEPLAPGHGS(0.99)PFPS(0.004)LS(0.006)K ;; 159.59 8.13E-11 832500000 394180 470970 227791 188200 335667 536460 539060 432600 396350 610570 TRUE FALSE FALSE 366550.0175 433648.622 315997.7757 438139.1111 293564.5149 470277.0195 404181.4864 334106.4236 430705.9371 457679.2979 0.80088835 0.94749451 0.690434934 0.957305941 0.641419693 1.027525216 0.883110703 0.730001171 0.941064932 1 18.80397751 -6.283807978 24.9885759 0.897388591 0.817103598 0.162072362 0.118922623 1994.483138 2228084.382 0.040450176 0.035703096 5.20E-07 6.283807978 -0.080284993 EDEGPPGYPEPLAPGHGS(ph)PFPSLSKK ddPTM_HeLa_A486_30min_R1 1 EDEGPPGYPEPLAPGHGSPFPSLSKK 26 1 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 EDEGPPGYPEPLAPGHGS(0.989)PFPS(0.005)LS(0.005)KK 96.242 0.0020895 99229000 74394 62933 44255 25571 73610 64423 84573 89277 42124 96748 TRUE FALSE FALSE 69179.36477 57945.95988 61391.72119 59530.58029 64377.14741 56475.14527 63411.94088 68950.576 45775.34224 72521.67108 0.953912999 0.799015784 0.846529324 0.820866086 0.887695312 0.778734748 0.874386096 0.950758235 0.631195359 1 16.14612455 -10.24190353 5.253543715 1.000016567 0.840801983 0.231276163 0.088416607 1.59E-05 2.29E-06 0.07924472 0.019217668 5.73E-11 10.24190353 -0.159214584 EDEIS(ph)PPPPNPVVK ddPTM_HeLa_A485_30min_R1 6 EDEISPPPPNPVVK 14 0 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 0 EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK ;;;;; 201.3 8.02E-22 10321200000 5990650 4770940 3139320 7716500 4588630 4993340 6753300 5587270 4079560 8834030 TRUE FALSE FALSE 7323249.425 5328859.931 4300685.106 8138032.856 4131769.886 5254783.561 5310402.286 4216983.272 4898290.272 6631868.899 1.104251235 0.803523111 0.648487654 1.227110032 0.623017425 0.792353353 0.800739937 0.635866501 0.738598779 1 22.66098406 EDEIS(ph)PPPPNPVVK ddPTM_HeLa_A486_30min_R1 7 EDEISPPPPNPVVK 14 0 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 0 EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK ;;;;;; 220.97 1.02E-27 8734870000 5738490 6160650 2719870 1980920 4112370 6223810 6710050 5658320 4895070 7842790 TRUE FALSE FALSE 5336251.485 5672457.657 3773076.505 4611681.87 3596558.208 5455979.601 5031124.518 4370044.056 5319378.609 5878904.336 0.9076949 0.964883477 0.641799269 0.784445809 0.611773556 0.92806062 0.855792888 0.743343284 0.904824829 1 22.48711587 -7.993070092 5.118054196 0.999771681 0.803788819 0.243578993 0.110511584 0.212084343 18.5648859 0.109568435 0.02854535 1.02E-08 7.993070092 -0.195982861 EDEKGDDVDDPENQNSALADTDASGGLTKES(ph)PDTNGPK ddPTM_HeLa_A486_30min_R1 1 EDEKGDDVDDPENQNSALADTDASGGLTKESPDTNGPK 38 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EDEKGDDVDDPENQNSALADTDASGGLT(0.28)KES(0.72)PDTNGPK 263.41 2.02E-65 170090000 76385 54304 14080 92077 40680 117660 172530 145780 44426 247060 TRUE FALSE FALSE 71030.80595 50000.75327 19532.15308 214359.9093 35577.53507 103144.3055 129361.1692 112589.0764 48276.88145 185194.5679 0.383546919 0.269990388 0.105468283 1.157484864 0.192108956 0.556951031 0.698514922 0.607950209 0.260681952 1 17.49868226 -14 0.112117283 2.500763407 0.216213763 0.222127179 0.293229478 262.9165118 1.946497245 92.71568256 3.474301783 1.00E-14 14 -2.284549644 EDENDAS(ph)DDEDDDEKR ddPTM_HeLa_A486_30min_R1 1 EDENDASDDEDDDEKR 16 1 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 EDENDAS(1)DDEDDDEKR 120.33 3.58E-05 556230000 120140 105270 54077 62371 86956 125630 133950 122020 95591 216290 TRUE FALSE FALSE 111718.8064 96928.02181 75017.06263 145202.8401 76049.16765 110131.0479 100434.2932 94238.70968 103876.9048 162129.5762 0.689071106 0.597842936 0.462698197 0.895597481 0.469064124 0.679277961 0.619469289 0.581255511 0.640702994 1 17.30678777 -8.064813655 20.08098273 1.000000001 0.622773069 0.485382172 0.115597548 2081.731177 644976.1986 0.104556476 0.026996366 8.61E-09 8.064813655 -0.377226931 EDENDAS(ph)DDEDDDEKRR ddPTM_HeLa_A485_30min_R1 2 EDENDASDDEDDDEKRR 17 2 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 EDENDAS(1)DDEDDDEKRR;EDENDAS(1)DDEDDDEKRR ; 183.42 8.74E-18 1094820000 497650 351170 231470 959270 400410 385180 680090 541070 308220 1229900 TRUE FALSE FALSE 608350.5256 392236.2767 317100.3853 1011672.491 360543.7745 405347.4292 534783.2157 408371.7341 370076.9268 923308.5646 0.65888106 0.424816028 0.343439233 1.095703571 0.390491097 0.439016213 0.579203136 0.442291721 0.400816088 1 19.81645334 -10.80251883 2.90166173 1.125470714 0.530556924 0.312194679 0.209055018 149834212.7 122146243.3 132569436.2 0.052617048 1.58E-11 10.80251883 -0.59491379 EDENDAS(ph)DDEDDDEKRR ddPTM_HeLa_A486_30min_R1 1 EDENDASDDEDDDEKRR 17 2 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 EDENDAS(1)DDEDDDEKRR 216.67 3.60E-34 451790000 409670 363970 125970 259710 229650 448480 556730 485860 282920 792960 TRUE FALSE FALSE 380954.2485 335127.6916 174748.9576 604618.005 200845.1556 393151.0974 417430.2655 375240.2842 307443.7334 594397.6547 0.640908061 0.563810589 0.29399335 1.017194466 0.337896952 0.66142774 0.702274415 0.631295028 0.517235778 1 19.1810689 -11.4013948 2.160081694 3.96601247 0.59723534 0.288799329 0.190083188 6742421.942 589513.5579 97912626.35 0.045592403 3.97E-12 11.4013948 -3.36877713 EDEPGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 EDEPGSPR 8 0 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 1 0 EDEPGS(1)PR;EDEPGS(1)PR ; 119.53 0.00079633 722890000 999200 1087840 818500 1114930 950010 929050 1112080 973380 860030 1377550 TRUE FALSE FALSE 1221468.593 1215053.425 1121297.211 1175835.803 855423.6687 977693.6214 874475.0231 734657.0288 1032630.132 1034152.137 1.181130463 1.174927152 1.08426717 1.137004664 0.827173912 0.945405987 0.845596109 0.710395504 0.998528259 1 19.98001701 -5.754556419 24.88109395 0.874134839 1.142227406 0.684639051 0.084967698 83.19920462 300753.5318 0.02486402 0.031378158 1.76E-06 5.754556419 0.268092568 EDEPGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EDEPGSPR 8 0 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 1 0 EDEPGS(1)PR;EDEPGS(1)PR ; 119.53 0.00079633 923130000 993840 1099260 660340 349480 828000 1000830 1035290 916510 886930 1141560 TRUE FALSE FALSE 924176.9482 1012150.634 916041.3325 813607.1017 724144.5192 877357.7703 776249.4918 707840.6803 963809.8065 855705.9457 1.080016976 1.182825291 1.070509487 0.950802207 0.84625393 1.02530288 0.907145142 0.827200844 1.126332955 1 19.70675559 -5.145606157 3.389098152 0.943613082 1.130712856 0.417828502 0.085617022 0.213130006 4.539746676 0.023125247 0.043612019 7.15E-06 5.145606157 0.187099774 EDFDSTSSSSS(ph)TPPLQPR ddPTM_HeLa_A485_30min_R1 1 EDFDSTSSSSSTPPLQPR 18 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 EDFDSTSS(0.001)SS(0.003)S(0.498)T(0.498)PPLQPR 227.63 1.04E-34 279310000 880930 1026500 734650 881070 796220 818890 882760 842020 726620 1063500 TRUE FALSE FALSE 1076889.839 1146540.246 1006427.606 929200.6231 716945.5411 861765.8142 694151.1145 635513.2748 872445.969 798389.0223 1.348828465 1.436067147 1.260572952 1.163844438 0.897990229 1.079380841 0.869439703 0.795994505 1.092757972 1 19.60673236 -5.387452092 1.543493893 0.942089004 1.393389374 0.781601386 0.093615187 0.170603436 0.802085399 0.030738265 0.060213213 4.10E-06 5.387452092 0.45130037 EDFDSTSSSSS(ph)TPPLQPR ddPTM_HeLa_A486_30min_R1 1 EDFDSTSSSSSTPPLQPR 18 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 EDFDSTSS(0.002)S(0.043)S(0.134)S(0.41)T(0.41)PPLQPR 288.72 2.42E-70 311200000 485820 513960 299380 117110 356700 418540 407270 389450 399850 483480 TRUE FALSE FALSE 451766.5268 473231.9378 415307.9537 272637.9984 311959.3599 366904.7902 305366.7383 300780.7366 434509.3199 362413.4611 1.246550074 1.305779141 1.145950684 0.752284415 0.860783038 1.012392832 0.842592153 0.829938093 1.198932619 1 18.46727702 -5.04740282 5.264758683 0.918673492 1.267252816 0.592473301 0.118736527 0.125421783 8.162727188 0.032043892 0.059015138 8.97E-06 5.04740282 0.348579323 EDFDSTSSSSST(ph)PPLQPR ddPTM_HeLa_A485_30min_R1 2 EDFDSTSSSSSTPPLQPR 18 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 EDFDSTS(0.001)S(0.001)SS(0.006)S(0.161)T(0.831)PPLQPR;EDFDSTSS(0.001)S(0.001)S(0.003)S(0.019)T(0.977)PPLQPR ; 253.1 6.20E-57 583990000 527230 619740 464121 529760 472790 490110 542860 518530 423866 625800 TRUE FALSE FALSE 644510.4946 692213.202 635818.6716 558699.4474 425717.3675 515771.4017 426873.5262 391359.7045 508932.0183 469799.577 1.37188394 1.473422361 1.35338281 1.189229354 0.906168052 1.097854121 0.908629014 0.833035455 1.083296033 1 18.84168589 -5.452215009 2.138372363 0.964300488 1.419580603 0.844165953 0.082482046 0.111762332 1.010367736 0.025614663 0.041735788 3.53E-06 5.452215009 0.455280115 EDFDSTSSSSST(ph)PPLQPR ddPTM_HeLa_A486_30min_R1 2 EDFDSTSSSSSTPPLQPR 18 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 EDFDSTSSSSS(0.026)T(0.973)PPLQPR;EDFDSTS(0.001)S(0.002)S(0.002)S(0.01)S(0.032)T(0.953)PPLQPR ; 243.09 9.53E-45 404000000 130580 137320 82336 28455 100940 114320 119330 110920 110140 145060 TRUE FALSE FALSE 121427.0163 126438.2631 114218.7042 66244.67804 88279.16397 100216.3607 89472.37186 85665.93737 119687.0239 108736.0318 1.116713699 1.162800049 1.050421855 0.609224715 0.811866706 0.921648133 0.822840142 0.787833949 1.100711713 1 16.73047056 -5.016571826 23.39154261 0.852546568 1.131470526 0.456297541 0.124592678 245.6809935 346788.0555 0.033201096 0.059655704 9.63E-06 5.016571826 0.278923958 EDGGTVGVFS(ph)PK ddPTM_HeLa_A485_30min_R1 1 EDGGTVGVFSPK 12 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 EDGGTVGVFS(1)PK 155.08 1.62E-06 0 151600 118740 82175 241970 194660 152220 228750 206420 111940 303590 TRUE FALSE FALSE 185322.897 132625.6101 112574.9521 255188.2084 175278.9669 160190.0038 179875.6938 155795.1713 134405.3312 227910.6002 0.813138559 0.581919446 0.493943467 1.119685562 0.769068954 0.702863332 0.789237945 0.68358019 0.589728302 1 17.7981085 -10.87760171 2.781803281 1.123934741 0.728523417 0.202553429 0.162468654 42463363.75 31296797.13 34784919.83 0.042154232 1.33E-11 10.87760171 -0.395411325 EDGGTVGVFS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EDGGTVGVFSPK 12 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 EDGGTVGVFS(1)PK;EDGGTVGVFS(1)PK ; 157.56 1.23E-06 0 342010 378890 190645 246838 342380 448060 547900 524900 250920 633100 TRUE FALSE FALSE 318036.8651 348865.3765 264467.8497 574651.3385 299435.5078 392782.9127 410809.6249 405391.7285 272669.9476 474567.6392 0.670161298 0.735122557 0.557281677 1.210894488 0.630964868 0.827664763 0.865650312 0.854233823 0.574564983 1 18.8562542 EDGIWSTDILK ddPTM_HeLa_A486_30min_R1 1 EDGIWSTDILK 11 0 P29460 P29460 IL12B Interleukin-12 subunit beta 0 0 72.006 0.024035 733620000 336270 785070 1704600 65625 1341200 326680 272240 393590 559400 215410 FALSE FALSE TRUE 312699.2095 722858.194 2364666.771 152778.3165 1172974.19 286377.543 204122.6725 303978.149 607889.2424 161469.9339 1.936578544 4.476735554 14.64462587 0.946171914 7.264350467 1.773565741 1.264152821 1.882568114 3.764720946 1 17.30090603 -6.271629801 23.66971671 1.950108466 5.992939993 0.233756579 3.541084006 526.1925634 1222204.234 1.244902274 1.11161834 5.35E-07 6.271629801 4.042831526 EDGNEEDKENQGDETQGQQPPQRR ddPTM_HeLa_A485_30min_R1 1 EDGNEEDKENQGDETQGQQPPQRR 24 2 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 0 154.79 1.63E-16 7719700 4742.3 5182.6 2868.8 7783.3 5781.1 6905.6 9399 9700.5 4657.4 11488 FALSE FALSE TRUE 5797.208274 5788.659987 3930.088501 8208.481971 5205.513385 7267.166538 7390.826867 7321.437165 5592.09746 8624.253021 0.672198306 0.671207115 0.455701902 0.951790486 0.603590058 0.842643012 0.856981683 0.848935803 0.648415283 1 13.07418379 -5.262830599 24.99716325 0.808717478 0.606852913 0.388042029 0.126960221 135.1324301 2428052.161 0.03388863 0.053545445 5.46E-06 5.262830599 -0.201864565 EDGSGDRGDGPFR ddPTM_HeLa_A486_30min_R1 1 EDGSGDRGDGPFR 13 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 86.699 0.0024307 393390000 330440 383610 303160 111590 429970 347400 345880 359830 292490 350870 FALSE FALSE TRUE 307277.8624 353211.3465 420551.6709 259787.1594 376039.1533 304541.3201 259337.1657 277904.564 317843.2687 263009.8682 1.168313054 1.342958532 1.598995786 0.987746814 1.42975302 1.157908341 0.986035875 1.056631699 1.208484194 1 18.00475741 -6.491033698 6.838070221 1.06768704 1.305692468 0.34239904 0.159374591 0.238003665 38.11253186 0.0567417 0.048544374 3.23E-07 6.491033698 0.238005427 EDHLVYADEESSNIT(ph)DGRIT(ph)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ddPTM_HeLa_A486_30min_R1 1 EDHLVYADEESSNITDGRITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 51 2 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 EDHLVYADEES(0.022)S(0.024)NIT(0.955)DGRIT(0.998)PEPAVS(0.001)NTEEPSTTSTASNYPDVLTRPSLHR 101.83 5.73E-07 160140000 8931.1 13208 12604 1365.8 14762 8023.1 7771 8977.2 13860 3902.9 TRUE FALSE FALSE 8305.07601 12161.34998 17484.60635 3179.651424 12910.41231 7033.291495 5826.613607 6933.287531 15061.39596 2925.588436 2.838771136 4.156890226 5.976440886 1.086841671 4.412928404 2.404060464 1.991603991 2.369877952 5.14815952 1 11.51451111 -5.262102363 24.99998786 2.725786995 4.307319601 0.228543711 1.418212033 94.19170899 3551865.089 0.383252007 0.608994576 5.47E-06 5.262102363 1.581532605 EDHLVYADEESSNITDGRIT(ph)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ddPTM_HeLa_A485_30min_R1 6 EDHLVYADEESSNITDGRITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 51 2 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 EDHLVYADEESSNIT(0.013)DGRIT(0.986)PEPAVS(0.001)NTEEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNITDGRIT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;EDHLVY(0.001)ADEES(0.002)S(0.01)NIT(0.167)DGRIT(0.73)PEPAVS(0.045)NT(0.045)EEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNIT(0.038)DGRIT(0.962)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNIT(0.001)DGRIT(0.999)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR;EDHLVYADEESSNIT(0.001)DGRIT(0.999)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ;;;;; 291.05 6.29E-97 10344600000 156279.3 271068.3 281294.4 111439.6 290876.1 210138.8 228211 224204.4 261071 213040.4 TRUE FALSE FALSE 191043.0911 302767.3797 385356.9042 117527.2632 261915.4542 221141.3426 179451.8555 169217.9194 313465.555 159933.349 1.194516918 1.893084723 2.409484367 0.734851511 1.637653784 1.382709385 1.122041505 1.058052748 1.959976184 1 17.28711127 -5.262635025 24.99999554 1.286929715 1.838434246 0.268895592 0.423742759 146.4092179 3061325.047 0.115611727 0.182950124 5.46E-06 5.262635025 0.551504532 EDHLVYADEESSNITDGRIT(ph)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ddPTM_HeLa_A486_30min_R1 1 EDHLVYADEESSNITDGRITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 51 2 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 EDHLVYADEESSNITDGRIT(1)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 302.68 9.58E-98 1483700000 120290 112450 142290 5439.1 151760 88411 106330 91293 121920 58008 TRUE FALSE FALSE 111858.2922 103539.0525 197388.4987 12662.49968 132724.8457 77503.74972 79725.10936 70507.57681 132488.1238 43482.41923 2.572494681 2.381170466 4.539501301 0.291209641 3.052379514 1.782415769 1.833502155 1.621519181 3.046935431 1 15.40814459 -5.257450913 24.99998866 1.882237591 3.08606683 0.298512626 0.94809752 472.696411 2962883.932 0.248223235 0.410439664 5.53E-06 5.257450913 1.203829239 EDKNGHDGDTHQEDDGEKS(ph)D ddPTM_HeLa_A485_30min_R1 4 EDKNGHDGDTHQEDDGEKSD 20 2 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 0 EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D ;;; 298.17 2.52E-87 5646840000 1666550 1186980 581268 3351010 1695370 1565200 3453520 3141060 1100532 4368530 TRUE FALSE FALSE 2037268.298 1325786.986 796303.2218 3534067.191 1526573.01 1647151.452 2715647.239 2370710.11 1321398.678 3279535.868 0.621206287 0.404260554 0.242809731 1.077611996 0.465484468 0.502251391 0.828058405 0.722879763 0.402922466 1 21.64506022 -14 0.143096555 2.35000286 0.455907356 0.217154094 0.230877519 218.3893268 1.894359039 84.96548086 1.349588093 1.00E-14 14 -1.894095503 EDKNGHDGDTHQEDDGEKS(ph)D ddPTM_HeLa_A486_30min_R1 4 EDKNGHDGDTHQEDDGEKSD 20 2 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 0 EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D;EDKNGHDGDTHQEDDGEKS(1)D ;;; 268.05 1.20E-59 8709300000 3530735 2286247 1093745 3663112 2336176 4069926 6320359 5181677 2182136 8278410 TRUE FALSE FALSE 3283248.709 2105076.461 1517272.356 8527909.859 2043151.022 3567819.91 4738938.328 4001922.262 2371285.305 6205442.253 0.529091816 0.339230691 0.244506724 1.374263028 0.329251476 0.574950143 0.763674551 0.644905246 0.382129945 1 22.5651026 -11.66098407 2.018016708 9.998942635 0.582846852 0.146066902 0.30728852 9608645.958 275603.1134 398324127 0.07872916 2.18E-12 11.66098407 -9.416095783 EDKS(ph)PSEESAPTTSPESVSGSVPSSGSSGR ddPTM_HeLa_A485_30min_R1 2 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKS(0.826)PS(0.035)EES(0.139)APTTSPESVSGSVPSSGSSGR;EDKS(0.827)PS(0.172)EES(0.001)APTTSPESVSGSVPSSGSSGR ; 291.17 1.63E-92 2026170000 218630 173473 109779 338650 188950 173633 307180 280430 146822 427830 TRUE FALSE FALSE 267263.4892 193759.1583 150390.8204 357149.592 170137.4746 182724.1554 241548.4836 211654.1028 176287.8287 321179.8546 0.832130301 0.603273074 0.468244873 1.111992508 0.529726482 0.568915369 0.752066109 0.658989347 0.548875735 1 18.29302188 -11.18842524 2.4102494 1.927925072 0.673995567 0.230214295 0.178329339 7618848.11 2151809.373 38451912.62 0.045166493 6.48E-12 11.18842524 -1.253929505 EDKSPSEES(ph)APTTSPESVSGSVPSSGSSGR ddPTM_HeLa_A486_30min_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKS(0.235)PS(0.086)EES(0.667)APT(0.007)T(0.002)S(0.001)PESVSGSVPSSGSSGR 50.631 0.015346 1392400000 39057 22779 7978.8 22372 21192 33524 46967 39464 21809 63198 TRUE FALSE FALSE 36319.30599 20973.90908 11068.40504 52083.14662 18533.90175 29388.14973 35215.35983 30478.90869 23699.42168 47372.80945 0.766669877 0.442741508 0.233644683 1.09943124 0.391235014 0.620359022 0.743366506 0.643384022 0.500274777 1 15.53177161 -14 0.349935294 5.553351092 0.590694165 0.210751165 0.227033254 692.7844766 5.69973388 2366.863072 0.172122849 1.00E-14 14 -4.962656927 EDKSPSEESAPTT(ph)SPESVSGSVPSSGSSGR ddPTM_HeLa_A486_30min_R1 2 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKSPSEESAPT(0.094)T(0.508)S(0.397)PES(0.001)VSGSVPSSGSSGR;EDKSPSEESAPT(0.009)T(0.496)S(0.496)PESVSGSVPSSGSSGR ; 200.11 1.05E-28 3816000000 536390 465110 211866 196345 398640 495140 570010 596100 356310 679690 TRUE FALSE FALSE 498791.8309 428252.9897 293906.1892 457101.0827 348638.854 434054.661 427387.469 460381.0428 387195.2377 509491.2 0.978999894 0.840550317 0.57686215 0.897171694 0.684288274 0.851937504 0.838851523 0.90360941 0.759964525 1 18.9586977 -6.494372629 24.61120228 0.864405381 0.789221342 0.091684777 0.117428687 1565.398477 1351513.658 0.040908759 0.035998927 3.20E-07 6.494372629 -0.075184039 EDKSPSEESAPTTS(ph)PESVSGSVPSSGSSGR ddPTM_HeLa_A485_30min_R1 2 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKSPSEESAPT(0.028)T(0.151)S(0.822)PESVSGSVPSSGSSGR;EDKSPSEESAPT(0.002)T(0.198)S(0.8)PESVSGSVPSSGSSGR ; 232.68 5.39E-40 4052500000 856110 809120 632840 1035240 874240 1100910 1357370 1386480 792910 1509980 TRUE FALSE FALSE 1046548.716 903739.5456 866953.8507 1091792.54 787197.596 1158551.945 1067356.811 1046443.606 952039.764 1133569.775 0.923232728 0.79725092 0.764799724 0.963145422 0.694441236 1.022038494 0.941588982 0.923140003 0.83985987 1 20.11244177 -6.280450369 24.99375293 0.94028818 0.830766991 0.324063886 0.084121288 1070.078953 1406828.911 0.028630475 0.025289165 5.24E-07 6.280450369 -0.10952119 EDKSPSEESAPTTS(ph)PESVSGSVPSSGSSGR ddPTM_HeLa_A486_30min_R1 2 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725;P54725-3 A0A494C0B4;P54725-3 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKSPSEESAPTT(0.014)S(0.986)PESVSGSVPSSGSSGR;EDKSPSEESAPT(0.003)T(0.04)S(0.954)PES(0.004)VSGSVPSSGSSGR ; 145.12 1.10E-09 2144850000 382170 333760 173924 136160 302640 325090 374990 378070 242090 440480 TRUE FALSE FALSE 355381.8565 307311.6421 241272.0306 316987.3611 264680.0692 284983.7011 281163.5358 291991.7142 263074.5561 330180.941 1.076324562 0.930737072 0.730726704 0.960041365 0.801621282 0.863113723 0.851543808 0.884338488 0.796758757 1 18.33289732 -4.373894605 3.677978186 0.856785596 1.078916544 0.430951569 0.074481179 0.198462154 4.308535509 0.017160044 0.094909121 4.23E-05 4.373894605 0.222130948 EDLAAATPASPLVLLPLETRPAEEPQPSASPHPVKPLSAAPVEGS(ph)PDRK ddPTM_HeLa_A486_30min_R1 1 EDLAAATPASPLVLLPLETRPAEEPQPSASPHPVKPLSAAPVEGSPDRK 49 3 A0A1B0GTL5 A0A1B0GTL5 1 0 EDLAAATPASPLVLLPLETRPAEEPQPSASPHPVKPLS(0.008)AAPVEGS(0.992)PDRK 175.46 3.73E-19 203090000 128250 127940 58238 9081.1 118040 135540 156670 138740 109180 99398 TRUE FALSE FALSE 119260.3373 117801.5685 80789.31327 21141.25973 103234.3225 118818.4529 117469.5089 107151.9307 118643.8103 74508.09383 1.600636 1.581057338 1.084302512 0.283744472 1.385545076 1.59470531 1.576600647 1.438124708 1.592361369 1 16.18510953 -5.98189577 24.99686567 1.477797618 1.123992031 0.125258045 0.375514073 483.4496493 667504.9992 0.124826722 0.141516586 1.04E-06 5.98189577 -0.353805586 EDLAYMNHIMVSVS(ph)PPEEHAMPIGR ddPTM_HeLa_A486_30min_R1 2 EDLAYMNHIMVSVSPPEEHAMPIGR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 EDLAYMNHIMVS(0.008)VS(0.992)PPEEHAMPIGR;EDLAYMNHIMVS(0.153)VS(0.847)PPEEHAMPIGR ; 233.87 1.71E-40 115587000 63775 84918 77564 29083 91618 87632 95754 84125 90699 81737 TRUE FALSE FALSE 59304.70183 78188.78841 107598.858 67706.69377 80126.41614 76820.85482 71795.33642 64971.57394 98560.86235 61269.52318 0.967931506 1.276144882 1.756156282 1.105063174 1.30776954 1.253818388 1.171795253 1.060422386 1.608644188 1 15.902882 EDLESS(ph)GLQR ddPTM_HeLa_A485_30min_R1 1 EDLESSGLQR 10 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 EDLES(0.021)S(0.979)GLQR 123.67 0.00023966 0 626920 559660 504770 642840 925200 531380 640380 700040 668360 719470 TRUE FALSE FALSE 766376.1912 625107.3686 691505.4282 677956.7214 833083.8394 559202.2351 503557.5816 528354.0924 802493.7214 540119.3699 1.418901513 1.1573504 1.280282595 1.255197942 1.542406894 1.035330829 0.932307948 0.978217264 1.485771047 1 19.04291876 -6.298814773 24.77866374 1.075337852 1.314180597 0.331109915 0.172597576 644.6846369 427402.8427 0.060971326 0.053773074 5.03E-07 6.298814773 0.238842746 EDLESS(ph)GLQR ddPTM_HeLa_A486_30min_R1 1 EDLESSGLQR 10 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 EDLES(0.333)S(0.667)GLQR 121.29 0.00027868 0 582200 695360 544970 169060 778890 676140 656440 644810 552090 669190 TRUE FALSE FALSE 541390.7865 640257.1411 755996.9788 393580.2238 681194.3533 592724.7213 492191.7689 498000.8391 599945.6057 501620.4683 1.079283683 1.276377623 1.507109511 0.784617552 1.357987555 1.181619887 0.981203519 0.992784128 1.196015003 1 18.93623669 -6.670309368 6.597401957 1.042508324 1.205550245 0.144061191 0.185506035 0.429887544 25.88774631 0.070801318 0.054424129 2.14E-07 6.670309368 0.163041921 EDLKPWEKS(ph)PILK ddPTM_HeLa_A485_30min_R1 1 EDLKPWEKSPILK 13 2 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 EDLKPWEKS(1)PILK 61.265 0.012179 315790000 111650 76003 40247 237960 112820 114650 194420 176830 71020 282520 TRUE FALSE FALSE 136486.1573 84890.88971 55136.04012 250959.1523 101587.2447 120652.8967 152880.5787 133462.1652 85273.06257 212092.9634 0.643520441 0.400253211 0.259961666 1.183250723 0.478975083 0.568867985 0.720818722 0.62926258 0.402055123 1 17.69433723 -11.22992749 2.298958882 2.38086494 0.591243725 0.212688792 0.238025778 8389446.798 1601833.438 60207117.66 0.062163463 5.89E-12 11.22992749 -1.789621214 EDLKPWEKS(ph)PILK ddPTM_HeLa_A486_30min_R1 2 EDLKPWEKSPILK 13 2 E9PDR5;Q9P2D0-2;Q9P2D0;E7EPI0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 EDLKPWEKS(1)PILK;EDLKPWEKS(1)PILK ; 108.56 0.00015913 659650000 921950 725500 187871 621010 598940 1115160 1525750 1389520 560030 1823770 TRUE FALSE FALSE 857326.066 668008.7378 260619.6826 1445742.664 523815.3603 977582.8973 1143991.212 1073156.629 608573.8513 1367086.121 0.627119281 0.48863691 0.190638818 1.057535909 0.383161933 0.715085087 0.836809909 0.784995629 0.445161312 1 20.3826727 -5.2509854 24.99807797 0.724512586 0.440782227 0.28610305 0.223001439 993.7555551 2376313.217 0.05870009 0.100320342 5.61E-06 5.2509854 -0.283730359 EDLPAENGETKTEESPAS(ph)DEAGEKEAK ddPTM_HeLa_A486_30min_R1 1 EDLPAENGETKTEESPASDEAGEKEAK 27 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 EDLPAENGETKTEES(0.011)PAS(0.989)DEAGEKEAK 132.6 2.20E-06 192740000 55031 46146 23948 50175 54058 69391 128550 111110 35594 130790 TRUE FALSE FALSE 51173.61108 42489.2229 33221.30695 116809.9357 47277.54157 60830.24394 96385.43034 85812.67851 38679.31658 98039.3327 0.52197021 0.433389556 0.338856926 1.191459922 0.482230348 0.620467748 0.983130216 0.875288276 0.394528558 1 16.58107304 -5.200474857 24.9999844 0.775103831 0.431603662 0.331184773 0.234209137 292.1389683 119797.8669 0.062236341 0.107796488 6.30E-06 5.200474857 -0.343500169 EDLRGELEK ddPTM_HeLa_A486_30min_R1 1 EDLRGELEK 9 1 Q9C029-3;Q9C029-4;Q9C029 Q9C029-3 TRIM7 Tripartite motif-containing protein 7 0 0 64.265 0.025245 0 44717 110840 94131 35583 138220 112400 119560 117660 94295 71493 FALSE FALSE TRUE 41582.56922 102056.6347 130581.0441 82839.02227 120883.1587 98533.2308 89644.82342 90871.3865 102468.5665 53590.68746 0.775929013 1.904372561 2.436636854 1.545772712 2.255674717 1.83862599 1.672768678 1.695656294 1.912059191 1 15.7096947 -10.20260249 4.519172299 0.999799121 1.80770576 0.234048006 0.422061128 282882956 218.7487789 592321.9413 0.100205479 6.27E-11 10.20260249 0.807906639 EDLRLPEGDLGK ddPTM_HeLa_A485_30min_R1 4 EDLRLPEGDLGK 12 1 I3L397;I3L504;P63241;P63241-2 I3L397 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 0 0 ;;; ;;; 161.87 3.86E-06 1316361000 2144550 1922310 1520280 2499900 2267160 2076210 2492080 2210100 1661690 3125740 FALSE FALSE TRUE 2621597.749 2147107.433 2082694.836 2636463.207 2041433.59 2184917.145 1959626.75 1668069.51 1995175.941 2346550.543 1.117213416 0.915005832 0.887555924 1.123548442 0.869972137 0.931118723 0.835109542 0.710860252 0.850259095 1 21.1621101 -6.31797209 1.629502907 0.829015891 0.991009001 0.27809017 0.102689774 0.459279964 2.421668071 0.044846499 0.039084556 4.81E-07 6.31797209 0.16199311 EDLRLPEGDLGK ddPTM_HeLa_A486_30min_R1 3 EDLRLPEGDLGK 12 1 I3L397;I3L504;P63241;P63241-2 I3L397 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 0 0 ;; ;; 124.51 5.70E-05 1638561000 2363220 2758763 1554452 1142359 3077671 2868309 3225325 2943907 2264642 3476441 FALSE FALSE TRUE 2197570.482 2540148.573 2156377.444 2659469.484 2691640.805 2514446.198 2418314.571 2273643.641 2460942.992 2605917.546 0.843300083 0.974761683 0.827492584 1.020550128 1.032895615 0.964898603 0.92800886 0.872492549 0.944367175 1 21.31336001 -3.074120582 1.005507664 0.953139072 2.15E-12 0.212307636 0.061018205 32.17768365 4.008825035 0.020303186 56.80283953 0.000843101 3.074120582 -0.953139072 EDLSKS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EDLSKSPK 8 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 EDLS(0.017)KS(0.983)PK;EDLS(0.016)KS(0.984)PK ; 68.893 0.0085634 1320480000 1435120 1090680 661520 3411700 1919350 2229260 4531700 4802000 1104270 5380500 TRUE FALSE FALSE 1754357.493 1218225.538 906243.7761 3598072.532 1728252.775 2345980.607 3563465.274 3624301.971 1325886.86 4039240.371 0.43432857 0.301597683 0.224359952 0.890779504 0.427865791 0.580797475 0.88221174 0.89727316 0.328251537 1 21.94565257 -5.252446518 24.92589746 0.700403576 0.318245612 0.421815482 0.211532372 629.8882642 1745884.354 0.056892266 0.096739052 5.59E-06 5.252446518 -0.382157964 EDLSKS(ph)PK ddPTM_HeLa_A486_30min_R1 3 EDLSKSPK 8 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 EDLS(0.001)KS(0.999)PK;EDLS(0.036)KS(0.964)PK;EDLS(0.005)KS(0.995)PK ;; 88.441 0.0020513 2027470000 1838970 1615170 835100 3476650 2386200 3501630 5776830 5183500 1582680 6357450 TRUE FALSE FALSE 1710067.699 1487178.047 1158473.085 8093816.9 2086900.546 3069634.493 4331406.033 4003330.205 1719867.977 4765503.14 0.358843054 0.31207157 0.24309565 1.698418123 0.437918198 0.644136496 0.908908442 0.84006454 0.360899558 1 22.18419711 EDLSPAFDHS(ph)PNK ddPTM_HeLa_A485_30min_R1 3 EDLSPAFDHSPNK 13 0 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 EDLSPAFDHS(1)PNK;EDLSPAFDHS(1)PNK;EDLSPAFDHS(1)PNK ;; 196.64 6.11E-19 2383100000 1741700 1114980 864900 2865590 1504830 1122310 1800600 1096200 1190730 3581170 TRUE FALSE FALSE 2129135.156 1245367.212 1184862.501 3022129.926 1355003.841 1181072.416 1415887.1 827355.2312 1429698.589 2688450.226 0.791956323 0.463228666 0.440723243 1.124116004 0.504009272 0.439313477 0.526655501 0.307744299 0.531792843 1 21.35834333 -10.59827855 6.170061064 1.001446442 0.564541452 0.257884623 0.218685898 0.004483441 0.000291908 0.218174947 0.052762363 2.52E-11 10.59827855 -0.43690499 EDLSPAFDHS(ph)PNK ddPTM_HeLa_A486_30min_R1 4 EDLSPAFDHSPNK 13 0 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 EDLSPAFDHS(1)PNK;EDLSPAFDHS(1)PNK;EDLSPAFDHS(1)PNK;EDLSPAFDHS(1)PNK ;;; 191.78 1.05E-17 2441410000 3412190 3805770 1820900 1462860 2715480 4358950 4662840 4020990 3162210 5165740 TRUE FALSE FALSE 3173013.102 3504186.925 2526001.245 3405612.009 2374879.178 3821187.068 3496148.114 3105498.355 3436312.909 3872205.081 0.819433123 0.904959023 0.652341803 0.879501973 0.613314411 0.986824558 0.902882993 0.801997386 0.887430505 1 21.88472393 -6.290043765 24.99889167 0.902642907 0.78030292 0.33437211 0.099043405 989.2067217 864517.1484 0.034076731 0.03005781 5.13E-07 6.290043765 -0.122339986 EDLSPAFDHS(ph)PNKIMTEK ddPTM_HeLa_A486_30min_R1 1 EDLSPAFDHSPNKIMTEK 18 1 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 EDLSPAFDHS(1)PNKIMTEK 159.74 3.70E-10 216560000 173170 137750 68741 97423 170410 179800 280050 248260 104270 285750 TRUE FALSE FALSE 161031.6773 126834.1883 95359.35615 226805.6675 149035.5888 157618.1041 209978.5279 191736.6175 113308.2076 214196.3401 0.751794719 0.592139848 0.445196011 1.058868081 0.695789614 0.735858064 0.980308664 0.895144228 0.528992267 1 17.7085743 -5.250017657 24.95529989 0.832999311 0.595953172 0.316870476 0.164978811 913.8100248 1996577.823 0.044192704 0.075697457 5.62E-06 5.250017657 -0.237046139 EDLVGPEVGAS(ph)PQSGRK ddPTM_HeLa_A485_30min_R1 2 EDLVGPEVGASPQSGRK 17 1 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 EDLVGPEVGAS(0.938)PQS(0.062)GRK;EDLVGPEVGAS(0.981)PQS(0.019)GRK ; 175.59 8.06E-13 787740000 666110 558460 405990 775710 729890 617130 917280 827300 575350 1224850 TRUE FALSE FALSE 814283.8714 623767.039 556182.5957 818085.0731 657219.5888 649441.9725 721295.6345 624403.3778 690817.4676 919517.4367 0.885555661 0.67836347 0.604863566 0.88968957 0.71474402 0.706285652 0.784428447 0.679055506 0.751282618 1 19.81051741 -8.059176472 21.88534292 1 0.738677209 0.446292297 0.085552197 5094.571544 1884132.605 0.0801945 0.020706131 8.73E-09 8.059176472 -0.261322791 EDLVGPEVGAS(ph)PQSGRK ddPTM_HeLa_A486_30min_R1 4 EDLVGPEVGASPQSGRK 17 1 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 EDLVGPEVGAS(0.993)PQS(0.007)GRK;EDLVGPEVGAS(0.973)PQS(0.027)GRK;EDLVGPEVGAS(0.99)PQS(0.01)GRK;EDLVGPEVGAS(0.983)PQS(0.017)GRK ;;; 199.29 3.15E-25 1301770000 720280 716650 371310 319339 649636 798570 944487 914698 550640 864650 TRUE FALSE FALSE 669792.0915 659860.044 515091.176 743437.3305 568152.5953 700050.5527 708166.3628 706441.2331 598369.9186 648136.0121 1.033412863 1.018088845 0.794726981 1.147039073 0.876594703 1.08009822 1.09261999 1.089958311 0.923216589 1 19.30593707 EDMAALEK ddPTM_HeLa_A485_30min_R1 3 EDMAALEK 8 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 126.41 0.0036696 159848000 409723 401542 297798 484460 407310 451340 534030 515650 350277 653640 FALSE FALSE TRUE 500864.4678 448498.8439 407965.8726 510924.8231 366756.7862 474971.4645 419930.1279 389186.029 420574.381 490699.5774 1.020715099 0.913998839 0.831396421 1.041217166 0.747416145 0.967947572 0.855778458 0.793124851 0.857091386 1 18.9044805 EDMAALEK ddPTM_HeLa_A486_30min_R1 1 EDMAALEK 8 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 109.71 0.012402 21690000 45156 52307 28716 14788 43384 51277 54543 50987 38468 61826 FALSE FALSE TRUE 41990.79759 48162.00282 39835.60424 34427.21134 37942.37418 44950.96509 40895.7645 39378.37314 41802.43721 46344.36718 0.906060437 1.039220206 0.859556547 0.742856434 0.818705195 0.969933734 0.882432256 0.8496906 0.901996073 1 15.50010638 -9.257433384 14.42488554 1.000006673 0.884522042 0.168087016 0.076313693 0 0 0.080250382 0.019463576 5.53E-10 9.257433384 -0.115484631 EDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_HeLa_A485_30min_R1 6 EDNSEGEEILEEVGGDLEEEDDHHMEFCR 29 0 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR ;;;;; 206.64 6.01E-29 2660143000 254218.8 264069.8 217421.2 247561.5 243067.5 214653.5 242579.7 204378 188124.2 299420.6 TRUE FALSE FALSE 310768.895 294950.466 297854.3495 261085.1579 218866.8462 225892.4253 190750.5654 154253.975 225879.0014 224780.5548 1.3825435 1.312170736 1.325089484 1.161511315 0.973691191 1.004946471 0.848607948 0.686242523 1.004886751 1 17.77815771 -5.655645725 1.13168423 0.871037584 1.368546388 0.815110772 0.091082917 0.193878409 0.520522249 0.037394184 0.062719706 2.21E-06 5.655645725 0.497508804 EDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_HeLa_A486_30min_R1 10 EDNSEGEEILEEVGGDLEEEDDHHMEFCR 29 0 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR ;;;;;;;;; 309.8 8.34E-109 3377031000 311914.5 412038.4 203539.1 126906.1 246483.1 338577.7 360688.3 344189.3 294859.2 439281.4 TRUE FALSE FALSE 290050.9043 379386.9766 282354.8905 295443.8143 215566.8912 296807.4258 270440.2724 265824.91 320417.8329 329282.4782 0.88085739 1.152162662 0.857485318 0.897235152 0.654656429 0.901376312 0.82130174 0.807285318 0.973078904 1 18.32896622 -4.870935196 10.66085745 0.850199029 1.016254096 0.229133053 0.109588952 0.388241687 35.07897811 0.027199388 0.056720649 1.35E-05 4.870935196 0.166055067 EDPAS(ph)STGGIK ddPTM_HeLa_A485_30min_R1 1 EDPASSTGGIK 11 0 Q86YR7-4;Q86YR7 Q86YR7-4 MCF2L2 Probable guanine nucleotide exchange factor MCF2L2 1 0 EDPAS(0.333)S(0.333)T(0.333)GGIK 62.466 0.025069 467870000 776410 758220 546080 975530 885510 829750 1110400 1062800 707910 1221300 TRUE FALSE FALSE 949119.7259 846887.2334 748097.7163 1028820.734 797345.5152 873194.427 873153.9689 802146.6336 849981.0437 916852.3864 1.035193604 0.923689839 0.815941287 1.122122546 0.869655276 0.952382783 0.952338655 0.874891799 0.927064221 1 19.80632995 EDPAS(ph)STGGIK ddPTM_HeLa_A486_30min_R1 1 EDPASSTGGIK 11 0 Q86YR7-4;Q86YR7 Q86YR7-4 MCF2L2 Probable guanine nucleotide exchange factor MCF2L2 1 0 EDPAS(0.444)S(0.278)T(0.278)GGIK 64.439 0.013913 0 720280 744080 413320 305620 698440 785510 901600 828080 597530 961040 TRUE FALSE FALSE 669792.0915 685116.3909 573368.5731 711498.8052 610835.1425 688601.7627 676010.1438 639544.2609 649324.3815 720389.3287 0.929764039 0.951036285 0.795914862 0.987658724 0.847923641 0.955874463 0.938395555 0.887775867 0.901352027 1 19.45841728 EDPGSGVRVS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EDPGSGVRVSPK 12 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 EDPGS(0.001)GVRVS(0.999)PK;EDPGS(0.001)GVRVS(0.999)PK ; 60.474 0.010062 396240000 1097370 1017230 651680 1371380 1215640 1221820 1808030 1891580 969680 1955240 TRUE FALSE FALSE 1341476.171 1136186.2 892763.5507 1446295.017 1094606.613 1285792.606 1421729.62 1427667.039 1164285.882 1467834.652 0.913915044 0.774055987 0.608218064 0.985325572 0.745728827 0.875979188 0.968589765 0.972634784 0.793199616 1 20.48525803 -6.501652777 5.79070474 0.93064418 0.803031525 0.242010033 0.107021874 0.260829733 29.64934163 0.039076643 0.032694447 3.15E-07 6.501652777 -0.127612654 EDPGSGVRVS(ph)PK ddPTM_HeLa_A486_30min_R1 1 EDPGSGVRVSPK 12 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 EDPGS(0.005)GVRVS(0.995)PK 51.875 0.023334 334380000 550540 510780 270040 321010 484200 637490 763170 741700 430230 974970 TRUE FALSE FALSE 511949.989 470303.9326 374606.7199 747327.5029 423467.121 558842.9653 572216.794 572831.1012 467522.6828 730831.166 0.700503773 0.643519262 0.512576279 1.022572022 0.579432215 0.764667671 0.782967148 0.783807708 0.639713664 1 19.47917863 -14 0.189710601 2.182723174 0.66678912 0.290097474 0.133263021 176.750233 1.727748168 79.31334201 0.356726948 1.00E-14 14 -1.515934054 EDPQARPLEGSSSEDSPPEGQAPPS(ph)HSPR ddPTM_HeLa_A486_30min_R1 1 EDPQARPLEGSSSEDSPPEGQAPPSHSPR 29 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 EDPQARPLEGSSSEDSPPEGQAPPS(0.5)HS(0.5)PR 201.75 6.71E-29 894720000 53631 54331 46708 13649 69443 47240 59578 56077 47440 65950 TRUE FALSE FALSE 49871.74385 50025.61369 64794.58848 31775.56178 60732.81141 41412.0091 44670.95425 43309.49125 51552.1374 49435.69074 1.008820613 1.011933139 1.310684397 0.642765607 1.22852155 0.837694558 0.903617479 0.876077397 1.042812119 1 15.59326537 -5.242525398 24.99868846 0.935015678 1.100624702 0.200831743 0.161786629 1402.861809 1854166.008 0.041574729 0.071849487 5.72E-06 5.242525398 0.165609024 EDPQARPLEGSSSEDSPPEGQAPPSHS(ph)PR ddPTM_HeLa_A485_30min_R1 4 EDPQARPLEGSSSEDSPPEGQAPPSHSPR 29 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 EDPQARPLEGSSSEDSPPEGQAPPS(0.027)HS(0.973)PR;EDPQARPLEGSSSEDSPPEGQAPPS(0.064)HS(0.936)PR;EDPQARPLEGSSSEDSPPEGQAPPS(0.33)HS(0.67)PR;EDPQARPLEGSSSEDSPPEGQAPPS(0.116)HS(0.884)PR ;;; 169.13 1.81E-14 5085170000 683301 840777 865323 629952 995801 827277 878002 875904 826894 845700 TRUE FALSE FALSE 835298.9501 939098.5564 1185441.987 664364.6826 896655.556 870591.9445 690409.7001 661087.1706 992844.0411 634882.554 1.315674757 1.479168943 1.867183118 1.046437138 1.412317208 1.371264558 1.087460501 1.041274747 1.563823159 1 19.27613021 -5.277682957 24.9925738 1.22833538 1.546524984 0.336196987 0.216227184 943.9143096 1452316.35 0.060516403 0.090059985 5.28E-06 5.277682957 0.318189604 EDPQARPLEGSSSEDSPPEGQAPPSHS(ph)PR ddPTM_HeLa_A486_30min_R1 3 EDPQARPLEGSSSEDSPPEGQAPPSHSPR 29 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 EDPQARPLEGSSSEDSPPEGQAPPS(0.094)HS(0.906)PR;EDPQARPLEGSSSEDS(0.226)PPEGQAPPS(0.041)HS(0.732)PR;EDPQARPLEGSSSEDSPPEGQAPPS(0.07)HS(0.93)PR ;; 168.31 2.41E-14 5674770000 784841 876871 667384 243296 951332 758572 803078 844127 728599 855336 TRUE FALSE FALSE 729827.6988 807384.5485 925812.958 566405.3835 832007.0697 664987.0992 602139.3903 651937.7093 791754.548 641154.2983 1.138302747 1.259267154 1.4439784 0.883415092 1.297670579 1.037171709 0.939148957 1.016818745 1.234889246 1 19.29031207 -5.259134019 24.99997469 1.063256376 1.278391196 0.356767676 0.136528862 234.4527239 2542455.685 0.037383289 0.060997909 5.51E-06 5.259134019 0.21513482 EDQEAAELLS(ph)EPEEESER ddPTM_HeLa_A485_30min_R1 3 EDQEAAELLSEPEEESER 18 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 EDQEAAELLS(1)EPEEESER;EDQEAAELLS(1)EPEEESER;EDQEAAELLS(1)EPEEESER ;; 286.73 8.94E-70 640860000 744000 784010 636410 813770 623950 615610 720550 649690 631880 944530 TRUE FALSE FALSE 909500.2332 875693.1495 871844.5422 858224.1945 561827.3472 647842.3877 566598.6061 490352.5088 758692.5201 709076.0538 1.282655405 1.23497775 1.229550113 1.210341528 0.792337217 0.913643021 0.799066057 0.691537256 1.069973406 1 19.43558085 -5.733194228 8.573012883 0.860195863 1.239369258 0.746452838 0.102951049 0.1116217 29.80009608 0.029587061 0.037683668 1.85E-06 5.733194228 0.379173396 EDQEAAELLS(ph)EPEEESER ddPTM_HeLa_A486_30min_R1 3 EDQEAAELLSEPEEESER 18 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 EDQEAAELLS(1)EPEEESER;EDQEAAELLS(1)EPEEESER;EDQEAAELLS(1)EPEEESER ;; 338.24 3.15E-123 498220000 702490 750020 459610 204413 503460 659120 612930 571810 612180 823800 TRUE FALSE FALSE 653249.0787 690585.6837 637583.3008 475883.7945 440311.3522 577804.4758 459568.4311 441621.3455 665244.2553 617515.118 1.057867346 1.118330003 1.032498286 0.770643148 0.713037364 0.935692842 0.744222154 0.715158759 1.077292257 1 19.23611493 -5.14328156 4.731620205 0.832885022 1.084702365 0.414602628 0.118594844 0.196252464 6.752498913 0.031689855 0.056833308 7.19E-06 5.14328156 0.251817343 EDQKMS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EDQKMSPK 8 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 EDQKMS(1)PK;EDQKMS(1)PK ; 56.359 0.02029 622270000 551480 260550 207275 414580 223180 1094370 664610 506350 575210 1400600 TRUE FALSE FALSE 512824.0998 239903.0691 287537.431 965163.1917 195186.6833 959357.7561 498317.5485 391065.1585 625069.6659 1049880.644 0.488459429 0.228505088 0.273876305 0.91930754 0.185913213 0.913777925 0.474642095 0.37248535 0.595372121 1 20.00179389 -14 0.156936467 2.812531039 0.352659752 0.298918192 0.240671872 172.7795657 1.572574568 98.03602941 1.066975262 1.00E-14 14 -2.459871287 EDQSEDKKRPSLPS(ph)S(ph)PSPGLPK ddPTM_HeLa_A486_30min_R1 1 EDQSEDKKRPSLPSSPSPGLPK 22 3 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 2 0 EDQS(0.349)EDKKRPS(0.516)LPS(0.566)S(0.542)PS(0.028)PGLPK 45.972 0.024841 293770000 156110 122530 39019 141000 106470 193380 325590 294060 85363 445390 TRUE FALSE FALSE 145167.4952 112820.2766 54128.20177 328255.1257 93115.53981 169522.7417 244123.9383 227108.9573 92762.33357 333861.445 0.434813595 0.337925443 0.162127741 0.983207647 0.278904741 0.507763757 0.731213328 0.680249129 0.277846798 1 18.34888997 -14 0.125020843 2.563220532 0.280866229 0.293234008 0.237320238 193.6238637 1.546094089 77.19018967 2.018725975 1.00E-14 14 -2.282354303 EDQSEDKKRPSLPSSPS(ph)PGLPK ddPTM_HeLa_A486_30min_R1 1 EDQSEDKKRPSLPSSPSPGLPK 22 3 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 EDQSEDKKRPSLPS(0.01)S(0.04)PS(0.95)PGLPK 78.991 0.024489 574060000 244670 229590 70544 206750 168280 353310 494250 435470 173090 524610 TRUE FALSE FALSE 227519.8965 211396.4522 97860.52603 481324.4486 147172.7533 309722.2044 370583.4224 336322.9872 188093.5806 393244.2414 0.578571464 0.53757037 0.248854314 1.223983464 0.374252787 0.78760773 0.942374696 0.855252161 0.478312359 1 18.58506611 -5.232936239 24.99858595 0.789368334 0.463255926 0.304180061 0.243900812 954.9571904 837541.0636 0.063861023 0.110583487 5.85E-06 5.232936239 -0.326112408 EDQTEYLEER ddPTM_HeLa_A485_30min_R1 3 EDQTEYLEER 10 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 0 ;; ;; 181.53 2.48E-09 45560000 135263 126712.5 145956.7 174001 229638 137396.4 201872.5 169318.4 166110.3 210915 FALSE FALSE TRUE 165351.7877 141530.4246 199952.1571 183506.234 206774.4344 144590.263 158740.7912 127792.7969 199447.1136 158337.7721 1.044297804 0.893851308 1.262820327 1.158954251 1.305907186 0.913176061 1.002545313 0.807089775 1.259630667 1 17.27264593 -6.29417143 24.99053991 0.984810036 1.128506679 0.169233213 0.150126627 1188.831566 907655.2327 0.05348729 0.0471743 5.08E-07 6.29417143 0.143696642 EDS(ph)CHRLSPVKGEFHQEFQPEPSLLGDSTNSGEER ddPTM_HeLa_A485_30min_R1 1 EDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEER 35 2 Q9Y2L9-2;Q9Y2L9;Q9Y2L9-3 Q9Y2L9-2 LRCH1 Leucine-rich repeat and calponin homology domain-containing protein 1 1 0 EDS(0.5)CHRLS(0.5)PVKGEFHQEFQPEPSLLGDSTNSGEER 235.35 2.05E-51 464050000 192110 189130 145960 150320 188960 156150 210710 162370 169750 265140 TRUE FALSE FALSE 234844.2067 211247.1083 199956.6779 158531.601 170146.4789 164325.7725 165690.0872 122548.5029 203817.268 199045.4775 1.17985201 1.061300718 1.00457785 0.796459196 0.854812081 0.825568983 0.832423269 0.615680921 1.023973368 1 17.60273857 -4.882748908 1.617633835 0.830576934 1.163811097 0.499770964 0.109697074 0.321249836 1.548411173 0.031244474 0.116744567 1.31E-05 4.882748908 0.333234163 EDS(ph)CHRLSPVKGEFHQEFQPEPSLLGDSTNSGEER ddPTM_HeLa_A486_30min_R1 2 EDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEER 35 2 Q9Y2L9-2;Q9Y2L9;Q9Y2L9-3 Q9Y2L9-2 LRCH1 Leucine-rich repeat and calponin homology domain-containing protein 1 1 0 EDS(0.5)CHRLS(0.5)PVKGEFHQEFQPEPSLLGDSTNSGEER;EDS(0.5)CHRLS(0.5)PVKGEFHQEFQPEPSLLGDSTNSGEER ; 230.54 2.46E-40 675770000 497700 510470 313770 62008 432990 454870 503120 462030 484610 415260 TRUE FALSE FALSE 462813.8001 470018.4981 435270.1471 144357.7577 378680.3567 398752.7642 377234.0545 356835.855 526616.385 311276.1931 1.486826845 1.509972521 1.398340627 0.463760997 1.216541339 1.281025575 1.211894976 1.146364107 1.69179782 1 18.24783572 -5.018234265 24.97988914 1.144310861 1.48733909 0.214725636 0.28508038 1120.539561 1535078.414 0.078677771 0.139735745 9.59E-06 5.018234265 0.343028229 EDS(ph)GTFSLGK ddPTM_HeLa_A485_30min_R1 5 EDSGTFSLGK 10 0 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 EDS(0.888)GT(0.112)FSLGK;EDS(0.898)GT(0.101)FS(0.001)LGK;EDS(0.903)GT(0.097)FSLGK;EDS(0.893)GT(0.107)FSLGK;EDS(0.99)GT(0.01)FSLGK ;;;; 214.04 8.83E-15 4264640000 7439170 5486860 3594580 9540590 6525090 5882730 9522050 8653280 5033820 11456990 TRUE FALSE FALSE 9093987.702 6128500.548 4924364.725 10061768.27 5875429.129 6190740.646 7487586.23 6531049.512 6044061.501 8600973.243 1.057320776 0.712535707 0.572535757 1.169840667 0.683112127 0.719772108 0.870551043 0.759338429 0.702718324 1 23.03606849 EDS(ph)GTFSLGK ddPTM_HeLa_A486_30min_R1 6 EDSGTFSLGK 10 0 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 EDS(0.963)GT(0.036)FS(0.001)LGK;EDS(0.998)GT(0.002)FSLGK;EDS(0.99)GT(0.01)FSLGK;EDS(0.863)GT(0.137)FSLGK;EDS(0.998)GT(0.002)FSLGK;EDS(0.923)GT(0.077)FSLGK ;;;;; 220.25 6.04E-17 7322400000 12417020 10670530 4239630 4849300 7523770 12348580 15197810 14034880 8503370 18284890 TRUE FALSE FALSE 11546651.02 9824958.341 5881328.277 11289415.47 6580068.61 10825137.75 11395157.19 10839444.2 9240448.958 13706234.53 0.84243787 0.716824035 0.429098763 0.823670093 0.480078507 0.789796623 0.831384956 0.790840415 0.674178524 1 23.70832894 -6.487132378 24.77618907 0.807231045 0.655789765 0.234820519 0.143082028 840.8675317 582815.0728 0.048861265 0.043073744 3.26E-07 6.487132378 -0.151441279 EDS(ph)GTYVCTAENSVGFVK ddPTM_HeLa_A485_30min_R1 1 EDSGTYVCTAENSVGFVK 18 0 Q96RW7-2;Q96RW7 Q96RW7-2 HMCN1 Hemicentin-1 1 0 EDS(0.272)GT(0.231)Y(0.015)VCT(0.231)AENS(0.251)VGFVK 53.909 0.026337 219330000 289640 463930 439360 119050 552720 441270 377430 542970 458930 169090 TRUE FALSE FALSE 354069.4188 518182.5778 601897.5473 125553.4 497689.2561 464374.2149 296788.9972 409805.7562 551033.0414 126938.9749 2.789288468 4.082139299 4.74162918 0.989084717 3.920696985 3.658247716 2.338044698 3.22836825 4.340928718 1 16.95377557 -10.59733652 2.76885625 0.821628254 3.33010279 0.313770578 1.03940323 100618174.8 99737197.74 131235471.6 0.26398509 2.53E-11 10.59733652 2.508474536 EDS(ph)PERCS(ph)DS(ph)DEEKKAR ddPTM_HeLa_A485_30min_R1 1 EDSPERCSDSDEEKKAR 17 3 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 3 0 EDS(1)PERCS(1)DS(1)DEEKKAR 92.792 0.00057554 676590000 285980 215050 238960 1089200 481090 273550 645930 452010 250930 1411200 TRUE FALSE FALSE 349595.2644 240198.2268 327361.248 1148700.238 433190.9904 287872.655 507921.7787 341153.8388 301289.3493 1059413.811 0.32998934 0.226727483 0.309002247 1.084279085 0.408896869 0.271728244 0.479436622 0.322021325 0.284392507 1 20.01483479 -10.629631 2.643341086 1.060899358 0.419162145 0.359260325 0.235068713 30049789.27 26923604.98 12547688.87 0.06417242 2.35E-11 10.629631 -0.641737214 EDS(ph)PERCS(ph)DS(ph)DEEKKAR ddPTM_HeLa_A486_30min_R1 1 EDSPERCSDSDEEKKAR 17 3 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 3 0 EDS(1)PERCS(1)DS(1)DEEKKAR 79.445 0.0028374 750540000 497710 563360 312600 1023300 579180 752540 1261800 1024800 492410 1657000 TRUE FALSE FALSE 462823.0992 518717.3019 433647.0917 2382294.115 506533.8438 659699.2661 946084.294 791475.4112 535092.4953 1242076.415 0.372620471 0.417621087 0.349130767 1.917993198 0.407812142 0.531126152 0.761695724 0.63721958 0.430804811 1 20.2443225 EDS(ph)RGSLIPEGATGFPDQGNTGENTR ddPTM_HeLa_A485_30min_R1 2 EDSRGSLIPEGATGFPDQGNTGENTR 26 1 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 0 EDS(0.92)RGS(0.08)LIPEGATGFPDQGNTGENTR;EDS(0.77)RGS(0.23)LIPEGATGFPDQGNTGENTR ; 132.82 2.44E-06 753320000 117122 143897 127668 150921 188458 159624 217942 248800 144252 211751 TRUE FALSE FALSE 143175.3848 160724.5024 174897.7059 159165.4321 169694.4598 167981.6658 171376.9113 187781.4099 173202.0532 158965.3727 0.900670268 1.011066119 1.100225181 1.001258509 1.067493234 1.056718598 1.078076995 1.181272416 1.089558376 1 17.27835301 -3.114181716 0.795872089 1.082785657 1.69E-16 0.517974422 0.049645502 10.79728999 1.30186273 0.018487867 15.74977318 0.000768809 3.114181716 -1.082785657 EDS(ph)RGSLIPEGATGFPDQGNTGENTR ddPTM_HeLa_A486_30min_R1 1 EDSRGSLIPEGATGFPDQGNTGENTR 26 1 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 0 EDS(0.838)RGS(0.162)LIPEGATGFPDQGNTGENTR 108.52 0.00022944 256030000 35786 36140 27960 17073 44174 36425 52741 61584 40003 53017 TRUE FALSE FALSE 33277.5862 33276.13478 38786.86079 39746.80682 38633.28501 31931.25384 39544.64396 47562.66757 43470.49225 39741.19812 0.837357397 0.837320875 0.975986196 1.000141131 0.972121799 0.803479899 0.995054146 1.196810107 1.093839499 1 15.27834775 -7.005070232 24.04154505 1.106381341 0.910971897 0.561412639 0.076136107 97.80834948 463778.2685 0.03406739 0.02221287 9.88E-08 7.005070232 -0.195409444 EDSCHRLS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 EDSCHRLSPVK 11 1 Q9Y2L9-2;Q9Y2L9;Q9Y2L9-3 Q9Y2L9-2 LRCH1 Leucine-rich repeat and calponin homology domain-containing protein 1 1 0 EDS(0.028)CHRLS(0.972)PVK 48.112 0.026297 65622000 266020 232420 164830 270910 250280 228880 311630 280980 220240 472300 TRUE FALSE FALSE 325195.2312 259599.4972 225807.4761 285709.1273 225361.2444 240863.8029 245047.7047 212069.2144 264440.1478 354564.302 0.917168563 0.732164789 0.636859026 0.80580342 0.635600491 0.679323331 0.691123453 0.598112143 0.74581718 1 18.43568777 -8.034339581 23.65740529 1.000000002 0.706664671 0.486770534 0.088026309 2247.394186 1548284.889 0.084620259 0.021848822 9.24E-09 8.034339581 -0.293335331 EDSGLFS(ph)PIR ddPTM_HeLa_A485_30min_R1 2 EDSGLFSPIR 10 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 EDSGLFS(1)PIR;EDSGLFS(1)PIR ; 165.07 4.51E-07 405860000 242348 281840 269352 252047 335430 266818 317340 322040 236904 324500 TRUE FALSE FALSE 296257.4765 314798.7363 368996.5135 265815.6894 302033.4114 280788.1779 249537.7166 243059.1851 284448.4598 243608.122 1.216123149 1.292234158 1.51471351 1.09116103 1.239833093 1.152622399 1.02434071 0.99774664 1.167647685 1 17.89420271 -6.049851599 1.053537438 1.047222201 1.31893955 0.510842952 0.105393971 0.418065869 0.989166297 0.053226285 0.059395974 8.92E-07 6.049851599 0.271717349 EDSGLFS(ph)PIR ddPTM_HeLa_A486_30min_R1 2 EDSGLFSPIR 10 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 EDSGLFS(1)PIR;EDSGLFS(1)PIR ; 245.46 3.89E-21 356890000 476910 528240 408510 164350 578630 491090 512880 532310 414190 518840 TRUE FALSE FALSE 443481.0718 486380.3386 566696.0123 382615.1058 506052.8299 430504.3088 384551.9993 411114.6332 450092.3227 388919.0869 1.140291353 1.250595188 1.45710517 0.983791021 1.301177666 1.106925125 0.988771218 1.05706983 1.157290392 1 18.56911051 -6.452547358 5.622843686 1.054269999 1.226433236 0.327937227 0.119847645 0.272941822 16.0225528 0.042835482 0.037188193 3.53E-07 6.452547358 0.172163237 EDSGT(ph)FSLGK ddPTM_HeLa_A485_30min_R1 1 EDSGTFSLGK 10 0 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 EDS(0.29)GT(0.71)FSLGK 240.05 3.34E-20 1888200000 1937000 1489500 937720 2575200 1752200 1465500 2668000 2344500 1447300 3167300 TRUE FALSE FALSE 2367878.967 1663684.068 1284621.65 2715876.655 1577744.816 1542231.314 2097960.004 1769507.699 1737759.835 2377750.4 0.995848415 0.699688272 0.540267662 1.142204268 0.663545179 0.648609423 0.882329787 0.74419405 0.73084199 1 21.18116585 -10.18060631 6.568742767 0.999997192 0.778336053 0.128145819 0.169356352 2.21E-06 2.76E-07 0.159055641 0.038576499 6.60E-11 10.18060631 -0.22166114 EDSMDMDMS(ph)PLRPQNYLFGCELK ddPTM_HeLa_A486_30min_R1 1 EDSMDMDMSPLRPQNYLFGCELK 23 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 EDS(0.007)MDMDMS(0.993)PLRPQNYLFGCELK 55.358 0.014565 14087000 45862 42849 22693 13431 28863 32581 35407 35640 23875 48553 TRUE FALSE FALSE 42647.31063 39453.48919 31480.33734 31268.04677 25242.7334 28561.48748 26547.7941 27525.55002 25944.50422 36395.01277 1.171789962 1.084035591 0.864962942 0.859129985 0.693576715 0.784763771 0.729434944 0.756300051 0.712858775 1 15.15145315 -4.73620502 1.407677028 0.768517202 1.211294009 0.717514606 0.083955079 0.272316775 0.864923181 0.02374525 0.13514691 1.84E-05 4.73620502 0.442776807 EDSQRPGAHLTVK ddPTM_HeLa_A485_30min_R1 3 EDSQRPGAHLTVK 13 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;Q32P51;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ;; ;; 106.32 0.0013887 849800000 890110 1099240 1002360 714640 1475710 1034750 1345970 1430780 1053030 1286970 FALSE FALSE TRUE 1088111.899 1227786.556 1373174.676 753678.9736 1328783.131 1088927.91 1058392.514 1079878.962 1264363.462 966152.0639 1.126232546 1.270800531 1.421282143 0.780083179 1.375335395 1.127077145 1.095471979 1.117711178 1.308658864 1 19.88189075 -11.3783504 1.980455766 4.49E-05 1.178109431 0.089314309 0.172587138 2807280.114 369881.1148 12489745.94 0.042369606 4.18E-12 11.3783504 1.17806457 EDSQRPGAHLTVK(ac)K ddPTM_HeLa_A485_30min_R1 2 EDSQRPGAHLTVKK 14 2 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;Q32P51;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 1 ; EDSQRPGAHLTVK(1)K;EDSQRPGAHLTVK(1)K 133.14 5.42E-05 114295000 153161 218530 210490 110783 283240 214470 310120 347000 220610 258110 FALSE TRUE FALSE 187231.1361 244085.1825 288359.0102 116834.7948 255039.6311 225699.3176 243860.3286 261897.7059 264884.4034 193767.9272 0.966264845 1.259677936 1.488166873 0.602962505 1.316211794 1.164791929 1.258517507 1.351605035 1.367018822 1 17.56397027 EDSQRPGAHLTVK(ac)K ddPTM_HeLa_A486_30min_R1 2 EDSQRPGAHLTVKK 14 2 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;Q32P51;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 1 ; EDSQRPGAHLTVK(1)K;EDSQRPGAHLTVK(1)K 134.88 3.90E-05 124331000 293930 286770 244470 10222.9 355870 272390 310620 303510 271580 199910 FALSE TRUE FALSE 273327.0249 264045.3008 339135.3311 23799.42784 311233.4662 238785.2913 232899.5906 234407.3986 295120.7731 149851.2348 1.82398914 1.76204955 2.263146724 0.158820365 2.076949627 1.593482306 1.554205348 1.564267381 1.969425033 1 17.19317145 -10.98355052 2.52191227 0.431517298 1.625644932 0.110829158 0.542926833 19391115.75 8570262.67 64201183.28 0.131899673 1.04E-11 10.98355052 1.194127634 EDSSGMHHENQTYPPYS(ph)PQAQPQPIHR ddPTM_HeLa_A485_30min_R1 1 EDSSGMHHENQTYPPYSPQAQPQPIHR 27 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 EDSSGMHHENQTYPPY(0.008)S(0.992)PQAQPQPIHR 162.38 7.90E-14 305570000 184390 183390 131120 142040 183270 138570 182570 174830 154900 293410 TRUE FALSE FALSE 225406.9194 204835.8652 179626.7444 149799.2855 165022.9953 145825.3109 143562.428 131952.6684 185987.0092 220268.2868 1.023328971 0.929938069 0.815490723 0.6800765 0.749190897 0.66203498 0.651761677 0.599054318 0.844365804 1 17.74890227 -4.758427109 1.834500838 0.717036781 1.021821737 0.413923193 0.110176064 0.333597688 2.051360485 0.029873612 0.126161523 1.74E-05 4.758427109 0.304784955 EDSSGMHHENQTYPPYS(ph)PQAQPQPIHR ddPTM_HeLa_A486_30min_R1 1 EDSSGMHHENQTYPPYSPQAQPQPIHR 27 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 EDSSGMHHENQTYPPYS(1)PQAQPQPIHR 153.69 1.67E-09 621480000 242660 234490 186750 33178 257540 201240 190980 165990 194430 176650 TRUE FALSE FALSE 225650.7871 215908.1584 259064.6013 77240.06072 225236.9317 176413.0549 143194.784 128197.7005 211283.3489 132415.6902 1.704109134 1.630533044 1.956449428 0.583315018 1.700983708 1.332267004 1.081403449 0.968145847 1.595606598 1 17.01471455 -5.22722817 24.99944936 1.202831629 1.75038083 0.422151262 0.311915731 629.4979765 459997.7375 0.081716541 0.141527776 5.93E-06 5.22722817 0.5475492 EDSSVASSDRSS(ph)VER ddPTM_HeLa_A486_30min_R1 1 EDSSVASSDRSSVER 15 1 O14867 O14867 BACH1 Transcription regulator protein BACH1 1 0 EDSSVAS(0.001)S(0.002)DRS(0.22)S(0.776)VER 65.808 0.0073323 166930000 87034 109800 92835 39704 98970 107980 81211 97588 82881 85604 TRUE FALSE FALSE 80933.36604 101099.0481 128783.1982 92432.91853 86556.25974 94658.52546 60891.14884 75369.34273 90065.19181 64168.20121 1.261269048 1.575531902 2.006962885 1.440478567 1.348896464 1.475162521 0.948930275 1.17455907 1.403579812 1 15.96957092 -6.184309582 1.375613649 1.160738256 1.600877313 0.404052576 0.222319262 0.438120322 1.679498952 0.104313621 0.100413105 6.54E-07 6.184309582 0.440139057 EDSVKPGAHLTVK ddPTM_HeLa_A485_30min_R1 2 EDSVKPGAHLTVK 13 1 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ; ; 117.92 0.00031973 68018000 317420 288010 226970 260010 438720 358470 465520 448100 334140 477380 FALSE FALSE TRUE 388028.9839 321690.2641 310935.648 274213.6879 395039.4964 377238.9349 366057.8491 338202.7724 401198.8331 358377.9515 1.082736765 0.897628503 0.867619357 0.765152228 1.10229855 1.052628749 1.021429604 0.943704184 1.119485257 1 18.45112236 -5.781022306 24.99974288 1.036820074 0.900332675 0.375854193 0.086172259 268.2544113 342454.4651 0.027344731 0.031049175 1.66E-06 5.781022306 -0.1364874 EDSVKPGAHLTVK(ac)K ddPTM_HeLa_A486_30min_R1 1 EDSVKPGAHLTVKK 14 2 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 1 EDSVKPGAHLTVK(1)K 152.89 2.91E-06 36372000 176860 168890 104360 12859 189620 170640 193770 195370 174980 141380 FALSE TRUE FALSE 164463.0273 155506.5413 144770.9869 29936.40186 165836.0915 149588.1717 145286.6965 150888.5159 190147.4073 105977.5278 1.551866993 1.467353925 1.366053633 0.282478772 1.564823175 1.41150841 1.37091985 1.423778409 1.794223844 1 16.69339885 EDTDHEEKAS(ph)NEDVTK ddPTM_HeLa_A485_30min_R1 1 EDTDHEEKASNEDVTK 16 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 EDTDHEEKAS(1)NEDVTK 109.89 9.75E-05 652800000 600070 327610 194480 1179000 358340 352570 622600 497890 294080 1396700 TRUE FALSE FALSE 733553.5013 365921.1397 266426.245 1243405.785 322662.4114 371030.02 489576.4238 375781.6968 353099.1585 1048528.394 0.699602896 0.348985437 0.254095403 1.185858 0.307728826 0.353857866 0.46691766 0.358389624 0.336756887 1 19.9999345 -10.1622006 5.479016325 1.000009978 0.476835607 0.259737315 0.263774028 4.32E-05 6.60E-06 0.254581057 0.061743391 6.88E-11 10.1622006 -0.523174371 EDTDHEEKAS(ph)NEDVTK ddPTM_HeLa_A486_30min_R1 2 EDTDHEEKASNEDVTK 16 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 EDTDHEEKAS(0.999)NEDVT(0.001)K;EDTDHEEKAS(0.975)NEDVT(0.025)K ; 154.84 1.31E-08 1475320000 1413030 1346180 648520 818920 999320 1622650 1953550 1650770 1206480 2812100 TRUE FALSE FALSE 1313983.894 1239503.794 899644.312 1906487.146 873975.9673 1422463.941 1464751.127 1274925.707 1311058.658 2107931.856 0.623352169 0.588018911 0.426790036 0.904434904 0.414613008 0.674814955 0.694875939 0.604823018 0.621964441 1 21.0073968 -14 0.304491782 4.279431215 0.597829409 0.439763155 0.130113899 255.2611194 2.34607051 535.2899313 0.121735809 1.00E-14 14 -3.681601806 EDTEEHHLR ddPTM_HeLa_A485_30min_R1 9 EDTEEHHLR 9 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;F8VYN5;P22626;P22626-2;A0A087WUI2 F8W6I7;P22626 HNRNPA1;HNRNPA1L2;HNRNPA2B1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoproteins A2/B1" 0 0 ;;;;;;;; ;;;;;;;; 195.57 1.41E-08 6732294800 3557428 4041618 3838249 4326702 4134793 3416061 4412296 3704715 3747653 5145388 FALSE FALSE TRUE 4348765.586 4514250.068 5258177.028 4563058.774 3723118.491 3594920.672 3469572.914 2796127.837 4499772.582 3862737.465 1.125824787 1.168666032 1.361256641 1.181301814 0.963854915 0.930666581 0.898216083 0.723872089 1.164918046 1 21.8811922 -5.762985205 3.828347711 0.925974824 1.22228629 0.547993605 0.116580669 0.1560427 5.001688093 0.036099506 0.044409339 1.73E-06 5.762985205 0.296311466 EDTEEHHLR ddPTM_HeLa_A486_30min_R1 5 EDTEEHHLR 9 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;F8VYN5;P22626;P22626-2;A0A087WUI2 F8W6I7;P22626 HNRNPA1;HNRNPA1L2;HNRNPA2B1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoproteins A2/B1" 0 0 ;;;; ;;;; 199.46 3.35E-09 3248322100 2213050 2458969 1713103.8 729575.7 2130175 2327732 2464104 2149266 2026349 2510589 FALSE FALSE TRUE 2057926.623 2264111.341 2376463.47 1698489.1 1862988.588 2040560.092 1847559.117 1659925.05 2201994.563 1881921.173 1.093524348 1.20308511 1.262785872 0.902529354 0.989939757 1.084296261 0.981740969 0.882037502 1.170078 1 20.84377477 -5.257467374 24.99986593 0.998745 1.188127112 0.490105122 0.086410488 280.6219316 1766230.641 0.023327657 0.038566309 5.53E-06 5.257467374 0.189382111 EDVETGLDPLSLLATECTGGKT(ph)PDSEDKLFSPVIAR ddPTM_HeLa_A485_30min_R1 1 EDVETGLDPLSLLATECTGGKTPDSEDKLFSPVIAR 36 2 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 EDVETGLDPLSLLATECT(0.009)GGKT(0.991)PDSEDKLFSPVIAR 177.41 1.82E-15 28707000 38661 23062 15634 76106 33995 26330 48546 41811 22275 88277 TRUE FALSE FALSE 47261.00607 25758.90029 21417.66719 80263.47807 30610.33844 27708.59809 38173.75052 31556.78669 26745.38818 66271.16852 0.713145809 0.388689393 0.323182278 1.211137209 0.461895257 0.418109394 0.576023501 0.476176705 0.40357502 1 16.01609374 -10.20998722 5.215275981 1.000033967 0.552088748 0.232878233 0.243692212 9.68E-05 1.47E-05 0.237316557 0.057553365 6.17E-11 10.20998722 -0.447945219 EDVETGLDPLSLLATECTGGKTPDSEDKLFS(ph)PVIAR ddPTM_HeLa_A485_30min_R1 1 EDVETGLDPLSLLATECTGGKTPDSEDKLFSPVIAR 36 2 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 EDVETGLDPLSLLATECTGGKTPDSEDKLFS(1)PVIAR 199.1 1.34E-29 34566000 25494 19036 8753.8 28158 22228 22940 35304 30303 12599 36613 TRUE FALSE FALSE 31165.05235 21262.09461 11992.1949 29696.20024 20014.90227 24141.10293 27761.01199 22871.14174 15127.50374 27486.05291 1.133849682 0.7735594 0.436301092 1.080409775 0.728183939 0.878303735 1.010003586 0.832099895 0.550370174 1 14.74641213 -4.257584449 23.34448356 0.807281143 1.133850011 0.203446038 0.192228863 247.7376195 1500069.644 0.047179084 0.3391597 5.53E-05 4.257584449 0.326568868 EDVETGLDPLSLLATECTGGKTPDSEDKLFS(ph)PVIAR ddPTM_HeLa_A486_30min_R1 2 EDVETGLDPLSLLATECTGGKTPDSEDKLFSPVIAR 36 2 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 EDVETGLDPLSLLATECTGGKTPDS(0.012)EDKLFS(0.988)PVIAR;EDVETGLDPLSLLATECTGGKTPDSEDKLFS(1)PVIAR ; 283.48 2.26E-79 53263000 46530 36039 16163.2 33849 37778 47993 73632 69345 26741 78302 TRUE FALSE FALSE 43268.48728 33183.13839 22422.02391 78802.18263 33039.53097 42072.11162 55208.4948 53556.65729 29058.93141 58694.66954 0.737179162 0.565351822 0.382011247 1.34257818 0.562905137 0.716796124 0.940604918 0.91246203 0.495086379 1 15.84094187 EDVEVAES(ph)PLR ddPTM_HeLa_A485_30min_R1 5 EDVEVAESPLR 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 EDVEVAES(1)PLR;EDVEVAES(1)PLR;EDVEVAES(1)PLR;EDVEVAES(1)PLR;EDVEVAES(1)PLR ;;;; 236.65 1.11E-21 4625980000 2479860 2402410 2345680 2981360 3041220 2631520 3106150 2690270 2352500 3707170 TRUE FALSE FALSE 3031496.302 2683350.951 3213444.644 3144224.148 2738425.458 2769302.318 2442495.678 2030477.064 2824625.172 2783040.744 1.089274854 0.964179542 1.154652389 1.129780135 0.983968871 0.99506352 0.877635616 0.729589413 1.014942083 1 21.4082306 -6.354162219 1.809996318 0.886643525 1.075782615 0.402232857 0.090904589 0.326626293 2.114973716 0.039187251 0.033502802 4.42E-07 6.354162219 0.18913909 EDVEVAES(ph)PLR ddPTM_HeLa_A486_30min_R1 3 EDVEVAESPLR 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 EDVEVAES(1)PLR;EDVEVAES(1)PLR;EDVEVAES(1)PLR ;; 233.7 1.35E-19 4966470000 2092880 2400510 1729610 797350 2290180 2303430 2476030 2496660 1992140 2326760 TRUE FALSE FALSE 1946179.92 2210284.845 2399361.313 1856271.096 2002924.269 2019256.226 1856501.105 1928225.02 2164820.299 1744124.151 1.115849418 1.267274949 1.375682637 1.064299863 1.148384 1.157747988 1.06443174 1.10555491 1.241207684 1 20.73407131 -5.280449708 24.94545406 1.117541549 1.254369616 0.368023492 0.084585702 835.7196278 1096633.867 0.023565879 0.035017822 5.24E-06 5.280449708 0.136828067 EDVEVAES(ph)PLRVLAETPDSFEK ddPTM_HeLa_A485_30min_R1 2 EDVEVAESPLRVLAETPDSFEK 22 1 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 EDVEVAES(1)PLRVLAETPDSFEK;EDVEVAES(1)PLRVLAETPDSFEK ; 229.7 1.07E-36 234700000 87351 116005 75514 90931 146405 163454 228399 328570 92019 135014 TRUE FALSE FALSE 106781.9286 129570.7756 103449.771 95898.33028 131828.4041 172012.1987 179599.6878 247987.6923 110486.3693 101357.4945 1.053517839 1.278354168 1.020642543 0.946139511 1.300628086 1.697084162 1.77194285 2.446663598 1.090066105 1 16.62909324 -6.126359716 3.221422717 1.70425507 1.0869833 0.273146968 0.386687696 0.286906083 5.602600155 0.130443193 0.131636549 7.48E-07 6.126359716 -0.61727177 EDVEVAES(ph)PLRVLAETPDSFEK ddPTM_HeLa_A486_30min_R1 4 EDVEVAESPLRVLAETPDSFEK 22 1 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 EDVEVAES(1)PLRVLAETPDSFEK;EDVEVAES(1)PLRVLAETPDSFEK;EDVEVAES(0.999)PLRVLAET(0.001)PDSFEK;EDVEVAES(1)PLRVLAETPDSFEK ;;; 161.24 5.06E-14 498626000 224035 148911 89298 101826 197790 157152 235870 255525 105582 223388 TRUE FALSE FALSE 208331.3034 137110.75 123876.5771 237056.074 172981.3339 137764.184 176852.8312 197347.5356 114733.9328 167450.1908 1.244138943 0.818815132 0.739781642 1.415681122 1.033031572 0.822717391 1.056151865 1.178544704 0.685182455 1 17.35337249 -7.760317366 24.9999951 0.842591287 1.027092184 0.120928143 0.20956602 66.76528174 1487916.883 0.161785682 0.053296574 1.74E-08 7.760317366 0.184500898 EDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_HeLa_A485_30min_R1 3 EDVSNFDDEFTSEAPILTPPREPR 24 1 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 EDVSNFDDEFTSEAPILT(1)PPREPR;EDVSNFDDEFTSEAPILT(1)PPREPR;EDVSNFDDEFTSEAPILT(1)PPREPR ;; 185.27 1.89E-20 674586000 155293 175704 182059 230994 240360 146853 194527 183735 168998 261706 TRUE FALSE FALSE 189837.3921 196251.0544 249410.2002 243612.6173 216428.9144 154541.996 152964.7173 138673.7032 202914.3485 196467.5105 0.96625336 0.99889826 1.269473001 1.239963883 1.101601552 0.78660332 0.778575129 0.705835295 1.032813761 1 17.58393123 -6.230759056 7.915504898 0.837243798 1.124840651 0.492242999 0.127945327 0.217382907 49.98860703 0.044382345 0.043829347 5.88E-07 6.230759056 0.287596853 EDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_HeLa_A486_30min_R1 3 EDVSNFDDEFTSEAPILTPPREPR 24 1 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 EDVSNFDDEFTSEAPILT(1)PPREPR;EDVSNFDDEFTSEAPILT(1)PPREPR;EDVSNFDDEFT(0.001)S(0.001)EAPILT(0.997)PPREPR ;; 210.11 7.22E-29 696279000 197228 271329 221718 76222 298607 285257 309123 283845 243384 242312 TRUE FALSE FALSE 183403.3357 249827.9019 307573.1474 177448.668 261152.9257 250064.8916 231777.1558 219219.6898 264480.7211 181635.498 1.009732886 1.375435444 1.693353726 0.976949275 1.437785722 1.376740199 1.276056489 1.206920961 1.456107005 1 17.47068666 -10.75615847 2.586136145 0.92585507 1.316779029 0.177135267 0.201590686 81016404.25 60600833.05 38297516.8 0.048326562 1.75E-11 10.75615847 0.390923959 EDVTKDADLS(ph)PVNASIIK ddPTM_HeLa_A486_30min_R1 1 EDVTKDADLSPVNASIIK 18 1 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 EDVTKDADLS(1)PVNASIIK 134.81 2.47E-06 72533000 159990 136770 65879 110990 171470 191900 287530 265410 103370 270650 TRUE FALSE FALSE 148775.5272 125931.8471 91389.1131 258390.3291 149962.6337 168225.3291 215586.9528 204981.9369 112330.1948 202877.4784 0.733326973 0.62072857 0.450464555 1.273627468 0.73917832 0.829196668 1.062646059 1.010373051 0.553684893 1 17.63024919 -5.235042524 24.99632869 0.918646463 0.603428895 0.367495437 0.193844683 830.8929177 786807.6591 0.051464468 0.089104665 5.82E-06 5.235042524 -0.315217568 EDYDS(ph)VEQDGDEPGPQR ddPTM_HeLa_A485_30min_R1 1 EDYDSVEQDGDEPGPQR 17 0 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 EDYDS(1)VEQDGDEPGPQR 188.27 1.15E-17 0 36227 35086 34823 52107 45448 29969 44754 35793 37052 60731 TRUE FALSE FALSE 44285.57117 39189.00249 47705.47681 54953.47347 40923.03754 31538.1305 35191.94229 27014.71063 44487.99654 45591.87937 0.971347788 0.859561023 1.046359077 1.205334683 0.897594881 0.691748858 0.771890582 0.592533385 0.975787731 1 15.47648926 -5.999795368 24.99999499 0.780536063 1.016041103 0.338341287 0.138861549 7.63053869 931991.5182 0.04316241 0.048470414 1.00E-06 5.999795368 0.23550504 EEAAEVAS(ph)LDVANIISGSGRPR ddPTM_HeLa_A485_30min_R1 2 EEAAEVASLDVANIISGSGRPR 22 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EEAAEVAS(1)LDVANIISGSGRPR;EEAAEVAS(1)LDVANIISGSGRPR ; 262.97 1.03E-59 148632000 109479 97499 113651 123957 148973 125163 159292 180124 96261 152023 TRUE FALSE FALSE 133832.2259 108900.6599 155695.2343 130728.457 134140.725 131716.3411 125257.9629 135948.3066 115579.6997 114126.4639 1.172666017 0.95421041 1.36423428 1.145470144 1.175369152 1.154126192 1.097536528 1.19120756 1.012733557 1 16.80027384 -7.772133246 23.79692666 1.006366452 1.155180249 0.28781457 0.094658887 167.2389024 372131.4754 0.084830623 0.02291354 1.69E-08 7.772133246 0.148813796 EEAAEVAS(ph)LDVANIISGSGRPR ddPTM_HeLa_A486_30min_R1 3 EEAAEVASLDVANIISGSGRPR 22 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EEAAEVAS(1)LDVANIISGSGRPR;EEAAEVAS(1)LDVANIISGSGRPR;EEAAEVAS(1)LDVANIISGSGRPR ;; 183.58 8.15E-20 158326000 130893 168766 146520 80453 179295 157696 195679 197690 142481 189908 TRUE FALSE FALSE 121718.0766 155392.3675 203256.4679 187298.6499 156806.1492 138241.0709 146718.0445 152680.3025 154831.3678 142353.8007 0.855039177 1.091592685 1.427826071 1.315726373 1.101524149 0.971109097 1.030657726 1.072541104 1.087651802 1 17.11912149 -5.994958261 24.85409751 1.036761727 1.187951403 0.173228796 0.142671219 237.0719294 1168671.225 0.048249077 0.054531505 1.01E-06 5.994958261 0.151189676 EEAENTLQS(ph)FRQDVDNASLAR ddPTM_HeLa_A485_30min_R1 2 EEAENTLQSFRQDVDNASLAR 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 EEAENTLQS(1)FRQDVDNASLAR;EEAENTLQS(1)FRQDVDNASLAR ; 217.84 8.96E-36 183322000 70263 84217 62379 52433 105872 68615 106587 133073 68428 83089 TRUE FALSE FALSE 85892.76195 94065.44556 85455.58791 55297.28202 95331.01194 72207.5753 83813.81671 100436.6381 82160.87194 62376.44144 1.377006446 1.508028406 1.369997806 0.886509085 1.528317579 1.157609726 1.343677433 1.610169413 1.317177929 1 15.92871363 -5.002838916 24.98836877 1.285640952 1.441641401 0.104087933 0.208434016 294.3654173 2591128.679 0.054762381 0.110750065 9.93E-06 5.002838916 0.156000449 EEAENTLQS(ph)FRQDVDNASLAR ddPTM_HeLa_A486_30min_R1 1 EEAENTLQSFRQDVDNASLAR 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 EEAENTLQS(1)FRQDVDNASLAR 203.47 7.49E-27 68834000 44405 52281 43689 23646 58921 50019 60187 56377 37262 55747 TRUE FALSE FALSE 41292.43881 48138.06316 60606.55083 55049.083 51530.57876 43848.16434 45127.57601 43541.1878 40491.90016 41787.58835 0.988150799 1.151970359 1.450348135 1.31735487 1.233155126 1.049310718 1.079927744 1.041964601 0.968993468 1 15.35078688 -6.275330138 4.36779536 1.031485325 1.242596217 0.43519345 0.113610176 0.219530178 10.69592645 0.043958217 0.040521557 5.30E-07 6.275330138 0.211110892 EEAENTLQSFR ddPTM_HeLa_A485_30min_R1 2 EEAENTLQSFR 11 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 246.5 9.30E-28 192396000 57147 66079 60211 62901 86559 68273 80767 70953 60539 83999 FALSE FALSE TRUE 69859.153 73806.36424 82485.55449 66337.12236 77940.88203 71847.66871 63510.47064 53551.6655 72688.622 63059.59519 1.107827489 1.170422424 1.308057152 1.051975075 1.235987669 1.139361401 1.00714999 0.849223109 1.152697251 1 15.94442829 -6.730243291 4.02244122 0.987357618 1.175805534 0.43240482 0.093763617 0.187980363 6.581952112 0.037340663 0.026921204 1.86E-07 6.730243291 0.188447916 EEAENTLQSFR ddPTM_HeLa_A486_30min_R1 1 EEAENTLQSFR 11 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 119.27 0.0037794 14548000 8745.5 11734 9394.9 5318.9 12262 13102 15327 12975 12234 13827 FALSE FALSE TRUE 8132.485612 10804.15511 13032.85688 12382.668 10723.98562 11485.60845 11492.02249 10020.87574 13294.45297 10364.6292 0.784638355 1.042406332 1.257435903 1.194704389 1.034671421 1.108154303 1.108773142 0.966833984 1.282675213 1 13.33938088 -4.30961506 3.658944467 1.118352473 0.76315878 0.506673579 0.098635781 0.187596638 4.493838813 0.024439646 0.165350642 4.90E-05 4.30961506 -0.355193693 EEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_HeLa_A485_30min_R1 6 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 0 EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK ;;;;; 200.99 1.81E-25 3288586000 2263720 1437740 1221635 3185310 1722810 1622300 2364130 1606710 1423130 3590360 TRUE FALSE FALSE 2767276.704 1605871.186 1673568.623 3359315.42 1551280.987 1707241.119 1859014.312 1212661.853 1708739.137 2695349.328 1.026685735 0.595793343 0.62090973 1.246337677 0.575539865 0.633402543 0.689711828 0.449908975 0.633958322 1 21.36204083 EEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_HeLa_A486_30min_R1 6 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 0 EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK;EEAPAS(1)PLRPLYPQIS(1)PLK ;;;;; 176.7 2.93E-13 3938008000 1918341 2186340 1015223 1011288 1503561 2350748 2599106 2243854 1743559 3149645 TRUE FALSE FALSE 1783875.202 2013086.456 1408344.534 2354329.572 1314970.359 2060736.612 1948782.188 1732977.427 1894692.098 2360953.391 0.755574087 0.852658279 0.596515179 0.99719443 0.556965827 0.87284087 0.825421711 0.734015942 0.802511437 1 21.17093813 -14 0.358345765 3.724174616 0.770548513 0.232509059 0.122151372 677.4817839 5.440350558 1422.082661 0.083932811 1.00E-14 14 -2.953626104 EEAPAS(ph)PLRPLYPQIS(ph)PLKIHIPEPDLR ddPTM_HeLa_A485_30min_R1 4 EEAPASPLRPLYPQISPLKIHIPEPDLR 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 0 EEAPAS(0.827)PLRPLY(0.178)PQIS(0.995)PLKIHIPEPDLR;EEAPAS(0.997)PLRPLY(0.003)PQIS(1)PLKIHIPEPDLR;EEAPAS(1)PLRPLY(0.003)PQIS(0.997)PLKIHIPEPDLR;EEAPAS(1)PLRPLYPQIS(1)PLKIHIPEPDLR ;;; 177.5 3.37E-15 409746000 120963 200849 114669 115071 250034 294460 398615 589684 135766 169048 TRUE FALSE FALSE 147870.802 224336.5434 157089.8349 121357.0374 225139.737 309877.4703 313447.6489 445063.0744 163012.9909 126907.4447 1.16518619 1.767717756 1.237829942 0.956264131 1.774046728 2.441759591 2.469891736 3.506989487 1.28450298 1 16.95341718 -6.035786219 4.16049028 2.309864177 1.313248657 0.243110512 0.679326782 0.26031491 9.959751982 0.21905792 0.229653882 9.21E-07 6.035786219 -0.99661552 EEAPAS(ph)PLRPLYPQIS(ph)PLKIHIPEPDLR ddPTM_HeLa_A486_30min_R1 3 EEAPASPLRPLYPQISPLKIHIPEPDLR 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 0 EEAPAS(1)PLRPLY(0.001)PQIS(0.999)PLKIHIPEPDLR;EEAPAS(1)PLRPLY(0.107)PQIS(0.893)PLKIHIPEPDLR;EEAPAS(1)PLRPLY(0.052)PQIS(0.948)PLKIHIPEPDLR ;; 111.27 0.00018439 202931000 188258 163255 146260 159287 334143 228980 388427 379320 146151 369521 TRUE FALSE FALSE 175062.0864 150318.0792 202895.789 370828.1859 292231.6692 200730.7757 291238.4562 292957.1165 158819.4864 276990.5364 0.632014684 0.542683086 0.732500798 1.338775652 1.05502402 0.724684599 1.051438291 1.057643053 0.573375136 1 18.07947716 -5.011027539 23.85606366 0.975495733 0.599909471 0.397064298 0.195019426 281.6920798 609397.4423 0.052644263 0.099074321 9.75E-06 5.011027539 -0.375586262 EEAPAS(ph)PLRPLYPQISPLK ddPTM_HeLa_A485_30min_R1 3 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 0 EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK ;; 146.39 1.01E-08 4571200000 1919850 1604400 1197330 2220760 1712450 1710710 1982680 1815300 1335760 2541190 TRUE FALSE FALSE 2346914.009 1792020.624 1640272.192 2342074.496 1541952.465 1800280.13 1559064.221 1370094.829 1603834.78 1907718.1 1.230220549 0.939352949 0.859808476 1.227683742 0.808270606 0.943682471 0.817240357 0.71818516 0.840708478 1 20.86341657 -5.796850645 24.9998691 0.843168357 1.040740186 0.381432585 0.128873076 197.2349343 139244.1616 0.039858253 0.045196604 1.60E-06 5.796850645 0.197571829 EEAPAS(ph)PLRPLYPQISPLK ddPTM_HeLa_A486_30min_R1 4 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 0 EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK;EEAPAS(1)PLRPLYPQISPLK ;;; 196.37 8.26E-20 2416519000 1193002 1337850 762252 391448 1088996 1314065 1375030 1292547 1236285 1489070 TRUE FALSE FALSE 1109378.72 1231833.894 1057416.388 911310.7267 952403.9672 1151949.021 1030982.95 998262.2642 1343447.179 1116197.18 0.993891349 1.103598823 0.947338344 0.81644242 0.853257815 1.032030041 0.923656652 0.89434222 1.20359306 1 20.09016048 -7.749789887 24.99936605 1.101796569 0.945666564 0.317841477 0.091548715 240.4308484 515962.7086 0.066491047 0.024667038 1.78E-08 7.749789887 -0.156130004 EEAPASPLRPLYPQIS(ph)PLK ddPTM_HeLa_A485_30min_R1 3 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 0 EEAPASPLRPLYPQIS(1)PLK;EEAPASPLRPLYPQIS(1)PLK;EEAPASPLRPLYPQIS(1)PLK ;; 195.97 1.41E-19 952290000 769590 549500 507770 1372070 709380 727720 1083340 804230 712560 1743670 TRUE FALSE FALSE 940782.6404 613759.245 695615.2531 1447022.71 638751.6364 765822.2939 851875.5589 606991.3315 855564.256 1309005.159 0.718700483 0.468874581 0.531407572 1.10543698 0.487967241 0.585041464 0.650780903 0.463704308 0.653598842 1 20.32003935 -8.047634832 22.56796622 1.000000002 0.624454778 0.279665602 0.178830967 5256.088734 2490175.336 0.17322935 0.044727626 8.96E-09 8.047634832 -0.375545224 EEAPASPLRPLYPQIS(ph)PLK ddPTM_HeLa_A486_30min_R1 4 EEAPASPLRPLYPQISPLK 19 1 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 0 EEAPASPLRPLYPQIS(1)PLK;EEAPASPLRPLYPQIS(1)PLK;EEAPASPLRPLYPQIS(1)PLK;EEAPASPLRPLYPQIS(1)PLK ;;; 171.72 5.00E-13 1845630000 992040 1368910 694610 700950 1036610 1731240 1946220 1668930 1311880 2200280 TRUE FALSE FALSE 922503.1189 1260432.586 963581.5943 1631847.024 906588.7078 1517657.211 1459255.171 1288951.071 1425594.815 1649315.567 0.559324812 0.76421554 0.584231189 0.989408611 0.549675712 0.920173945 0.884764081 0.781506643 0.864355399 1 20.65343603 -2.57396848 0.143164109 1.030107572 2.64E-12 0.396105381 0.127540695 50.08443597 0.725070717 0.558555241 9.918601756 0.002667052 2.57396848 -1.030107572 EEAQWT(ph)PTK ddPTM_HeLa_A485_30min_R1 3 EEAQWTPTK 9 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 EEAQWT(0.989)PT(0.011)K;EEAQWT(0.893)PT(0.107)K;EEAQWT(0.964)PT(0.036)K ;; 139.76 0.00068109 1120910000 1321030 1099470 899300 1663700 1630940 1304060 1776340 1611630 1109160 2221080 TRUE FALSE FALSE 1614888.566 1228043.452 1231988.493 1754583.718 1468557.887 1372338.565 1396810.448 1216375.216 1331758.238 1667405.632 0.968503725 0.736499523 0.738865498 1.05228367 0.880744229 0.823038221 0.837714843 0.729501683 0.798700816 1 20.66917368 -8.951292348 11.600469 1.000012111 0.838123656 0.188027249 0.099217067 0 0 0.099002489 0.024011631 1.12E-09 8.951292348 -0.161888455 EEAQWT(ph)PTK ddPTM_HeLa_A486_30min_R1 1 EEAQWTPTK 9 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 EEAQWT(0.98)PT(0.02)K 114.71 0.0034649 348050000 980110 930360 537210 393400 928620 1006100 1162600 1142300 730040 1294100 TRUE FALSE FALSE 911409.3503 856634.8853 745232.099 915855.0813 812143.8206 881977.6113 871705.1833 882223.2262 793320.455 970048.9368 0.939549868 0.883084196 0.768241756 0.944132864 0.837219433 0.909209399 0.898619802 0.909462598 0.81781488 1 19.887698 -6.338008267 25 0.900837685 0.872895006 0.059500207 0.062226946 458.8231638 149804.3583 0.021291937 0.0187777 4.59E-07 6.338008267 -0.027942679 EEAS(ph)DDDMEGDEAVVR ddPTM_HeLa_A485_30min_R1 10 EEASDDDMEGDEAVVR 16 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 1 0 EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR ;;;;;;;;; 423.07 1.32E-171 1.30E+11 6357802 7519352 6589835 7551966 8486283 7169676 9451416 10179264 6684277 9255892 TRUE FALSE FALSE 7772073.121 8398674.807 9027689.192 7964510.78 7641358.867 7545069.149 7432043.761 7682783.544 8025750.082 6948568.466 1.118514289 1.20869138 1.299215693 1.146208866 1.099702608 1.085845118 1.069579122 1.105664221 1.155022091 1 22.72828436 -5.550759559 4.259098365 1.091434513 1.211181374 0.502454479 0.05456666 0.172965748 7.225503855 0.016344592 0.022283475 2.81E-06 5.550759559 0.119746861 EEAS(ph)DDDMEGDEAVVR ddPTM_HeLa_A486_30min_R1 14 EEASDDDMEGDEAVVR 16 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 1 0 EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR ;;;;;;;;;;;;; 401.77 3.73E-152 76211150000 7202725 8349980 5336939 2443774 7151164 7714077 8693710 8318730 6276612 8601050 TRUE FALSE FALSE 6697851.172 7688297.175 7403544.709 5689229.373 6254198.329 6762392.611 6518451.805 6424736.776 6820673.782 6447291.097 1.038862845 1.192484884 1.148318666 0.88242167 0.970050559 1.048873474 1.011037304 0.996501737 1.057913111 1 22.62026169 -5.229177062 24.97716766 0.996952348 1.133148446 0.521332549 0.057533999 511.7536396 396194.0398 0.015812447 0.027385333 5.90E-06 5.229177062 0.136196098 EEAS(ph)SPLK ddPTM_HeLa_A486_30min_R1 1 EEASSPLK 8 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 EEAS(0.5)S(0.5)PLK 95.775 0.0029665 345560000 821470 997680 482360 398620 771680 1132500 1211600 1042200 858230 1449100 TRUE FALSE FALSE 763889.1951 918620.2033 669142.71 928007.5051 674888.6988 992783.6644 908444.865 804913.8111 932622.0674 1086235.928 0.703244273 0.845691235 0.616019681 0.854333282 0.621309498 0.913966882 0.836323714 0.741011957 0.858581495 1 20.05090606 -6.278110216 24.99164644 0.851686736 0.735435441 0.342090514 0.096448061 1124.496083 1685753.497 0.032184829 0.028460363 5.27E-07 6.278110216 -0.116251294 EEASLLSHS(ph)PGTSNQSQPCSPKPIR ddPTM_HeLa_A485_30min_R1 3 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 0 EEASLLSHS(0.982)PGT(0.018)SNQSQPCSPKPIR;EEASLLSHS(1)PGTSNQSQPCSPKPIR;EEASLLSHS(1)PGTSNQSQPCSPKPIR ;; 240.34 2.67E-49 2848280000 1258830 1653120 1467710 1001546 2156240 1644580 2017520 2203730 1482730 1798820 TRUE FALSE FALSE 1538852.391 1846438.004 2010677.006 1056257.922 1941557.175 1730687.666 1586460.37 1663261.762 1780300.311 1350407.279 1.139546872 1.367319351 1.488941179 0.782177302 1.437756746 1.281604219 1.174801406 1.231674168 1.318343242 1 20.36496315 -10.02886608 3.850147211 0.999955837 1.247963759 0.135915895 0.186748904 60804924.66 133965979.1 37893.11119 0.045172808 9.36E-11 10.02886608 0.248007922 EEASLLSHS(ph)PGTSNQSQPCSPKPIR ddPTM_HeLa_A486_30min_R1 2 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 0 EEASLLSHS(1)PGTSNQSQPCSPKPIR;EEASLLSHS(1)PGTSNQSQPCSPKPIR ; 211.94 3.34E-29 2283190000 1123960 1193890 886280 98289 1328540 1058980 1274080 1218740 1075470 840570 TRUE FALSE FALSE 1045176.208 1099281.808 1229471.351 228821.7593 1161902.125 928333.8145 955291.7082 941259.5069 1168692.606 630085.8008 1.658783941 1.744654152 1.95127608 0.363159682 1.844037945 1.47334508 1.51612956 1.493859258 1.854815017 1 19.26518877 EEASLLSHSPGTSNQSQPCS(ph)PKPIR ddPTM_HeLa_A485_30min_R1 1 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 0 EEASLLSHSPGT(0.004)S(0.013)NQS(0.19)QPCS(0.793)PKPIR 196.06 1.08E-21 852430000 464810 558690 475510 393310 748750 535740 744790 753730 485870 727410 TRUE FALSE FALSE 568205.3809 624023.9355 651420.9366 414795.5294 674201.821 563790.518 585659.5321 568876.5357 583379.6523 546080.074 1.040516598 1.142733393 1.192903692 0.759587374 1.234620806 1.032431954 1.072479221 1.041745639 1.068304229 1 19.05875299 -7.180951587 0.008534377 2.33E-07 2.105553437 0.025326724 0.121124754 7232.332542 56.17925775 6892.485653 6959.800426 6.59E-08 7.180951587 2.105553204 EEASLLSHSPGTSNQSQPCS(ph)PKPIR ddPTM_HeLa_A486_30min_R1 1 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 0 EEASLLSHS(0.001)PGT(0.002)S(0.002)NQS(0.187)QPCS(0.808)PKPIR 81.534 0.0028573 115610000 63942 59432 39642 9097.6 77347 70542 88135 69967 56132 49138 TRUE FALSE FALSE 59459.996 54722.39187 54992.44405 21179.67257 67645.41803 61839.24526 66082.6908 54037.04147 60997.56696 36833.52497 1.614290135 1.485668068 1.492999763 0.575010743 1.836517631 1.678884802 1.794090869 1.467061367 1.656033926 1 15.16873185 EEAT(ph)S(ph)NS(ph)PS(ph)KESK ddPTM_HeLa_A486_30min_R1 1 EEATSNSPSKESK 13 1 Q8IZX4;P21675-10;P21675-11;P21675-8;P21675-6;P21675-7;P21675-3;P21675-5;P21675-9;P21675;P21675-2;P21675-12;P21675-4 Q8IZX4 TAF1L;TAF1 Transcription initiation factor TFIID subunit 1-like;Transcription initiation factor TFIID subunit 1 4 0 EEAT(1)S(1)NS(1)PS(1)KES(0.001)K 43.791 0.010288 0 155380 221630 242320 49030 247490 165520 172440 186470 172130 145510 TRUE FALSE FALSE 144488.6644 204067.2316 336152.7936 114144.3178 216447.4964 145099.8253 129293.6881 144014.8516 187050.367 109073.3489 1.324692657 1.870917449 3.081896696 1.046491366 1.98442148 1.330295868 1.18538295 1.320348674 1.71490441 1 16.73493911 -5.839833091 1.454091879 1.337408752 1.993232109 0.203231744 0.527585052 0.645439514 2.841669194 0.205227623 0.264002556 1.45E-06 5.839833091 0.655823358 EEATS(ph)PGAK ddPTM_HeLa_A485_30min_R1 1 EEATSPGAK 9 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 EEAT(0.224)S(0.776)PGAK 118.23 0.00054717 412680000 781070 599390 237580 1689600 291810 1077300 624170 897540 662330 1631100 TRUE FALSE FALSE 954816.3268 669483.4465 325470.7285 1781898.57 262756.3718 1133705.762 490810.9805 677416.9077 795253.5557 1224496.788 0.779762214 0.546741693 0.265799577 1.455208856 0.214583145 0.925854419 0.400826679 0.553220649 0.649453362 1 20.22375756 -8.080196127 18.85455506 1.000000001 0.638677571 0.089669317 0.340634845 6992.627498 1644011.664 0.308853617 0.079745553 8.31E-09 8.080196127 -0.36132243 EEATYGVWAERDS(ph)DDERPSFGGK ddPTM_HeLa_A485_30min_R1 7 EEATYGVWAERDSDDERPSFGGK 23 2 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(0.999)DDERPS(0.001)FGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(0.992)DDERPS(0.008)FGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK ;;;;;; 269.19 2.51E-62 8959810000 4939930 4253900 3901269 6213550 6115160 4692600 6065400 5761830 4688820 7986060 TRUE FALSE FALSE 6038800.386 4751356.601 5344510.748 6552980.503 5506313.199 4938297.28 4769477.74 4348732.158 5629823.166 5995282.215 1.007258736 0.79251592 0.891452739 1.093022858 0.918441034 0.823697218 0.795538487 0.725359041 0.939042228 1 22.51539624 -6.194808522 5.440932687 0.835810336 0.939213472 0.130489295 0.101920735 0.389021518 22.54419027 0.034489047 0.03429397 6.39E-07 6.194808522 0.103403136 EEATYGVWAERDS(ph)DDERPSFGGK ddPTM_HeLa_A486_30min_R1 5 EEATYGVWAERDSDDERPSFGGK 23 2 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(0.998)DDERPS(0.002)FGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK;EEATYGVWAERDS(1)DDERPSFGGK ;;;; 284.27 1.48E-75 8637310000 4434130 4841440 2977850 1886520 4480940 5071180 5320680 5272450 3973590 5116360 TRUE FALSE FALSE 4123320.385 4457786.662 4130953.27 4391913.899 3918898.722 4445549.372 3989389.588 4072028.232 4318023.981 3835190.154 1.075128017 1.162337846 1.07711824 1.145161967 1.021826445 1.159147055 1.040206464 1.061753933 1.125895668 1 21.87086668 -13.99999998 0.159830166 0.645364937 1.122107679 0.270846336 0.047280939 166.9805515 1.532887553 18.79743432 0.189105287 1.00E-14 13.99999998 0.476742742 EEATYGVWAERDS(ph)DDERPSFGGKR ddPTM_HeLa_A485_30min_R1 3 EEATYGVWAERDSDDERPSFGGKR 24 3 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEATYGVWAERDS(1)DDERPSFGGKR;EEATYGVWAERDS(1)DDERPSFGGKR;EEATYGVWAERDS(1)DDERPSFGGKR ;; 140.55 3.03E-07 2661980000 820702 1354490 871050 759998 1382170 1455770 2058030 2699960 1008950 1138950 TRUE FALSE FALSE 1003264.329 1512885.823 1193287.642 801514.7663 1244556.302 1531991.866 1618315.078 2037790.577 1211437.01 855030.7258 1.173366405 1.769393517 1.395607908 0.937410484 1.455569097 1.791738963 1.892698156 2.383295144 1.416834476 1 19.70561674 -6.193697675 4.310003027 1.796818488 1.341431873 0.149757014 0.389075536 0.34066746 12.47850853 0.130684744 0.129002069 6.40E-07 6.193697675 -0.455386615 EEATYGVWAERDS(ph)DDERPSFGGKR ddPTM_HeLa_A486_30min_R1 5 EEATYGVWAERDSDDERPSFGGKR 24 3 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEATYGVWAERDS(1)DDERPSFGGKR;EEATYGVWAERDS(1)DDERPSFGGKR;EEATYGVWAERDS(0.949)DDERPS(0.051)FGGKR;EEATYGVWAERDS(1)DDERPSFGGKR;EEATYGVWAERDS(0.961)DDERPS(0.039)FGGKR ;;;; 214.47 1.07E-29 4691260000 2564040 2212850 1483790 1065569 2888600 2017860 2963230 3104220 1550260 2914950 TRUE FALSE FALSE 2384314.037 2037495.707 2058353.225 2480698.483 2526284.853 1768916.949 2221798.512 2397456.871 1684637.785 2185027.547 1.091205482 0.932480558 0.942026213 1.1353168 1.156179864 0.809562768 1.016828605 1.097220433 0.770991555 1 21.05922004 -6.250882637 24.95710857 0.94986619 1.043413895 0.195547158 0.11243836 1494.235751 3532512.148 0.038264243 0.037905066 5.61E-07 6.250882637 0.093547705 EECPRPMSIS(ph)PPDFSPK ddPTM_HeLa_A486_30min_R1 2 EECPRPMSISPPDFSPK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EECPRPMS(0.058)IS(0.942)PPDFSPK;EECPRPMS(0.024)IS(0.976)PPDFSPK ; 100.28 0.00020551 277970000 307510 320920 192312 104933 252619 306214 315290 298470 243995 413850 TRUE FALSE FALSE 285955.137 295489.1304 266780.3567 244289.327 220933.1694 268436.43 236401.1072 230514.8966 265144.6831 310219.2663 0.921783938 0.952517018 0.859973527 0.787473099 0.712183908 0.865311924 0.762045214 0.743070859 0.85470089 1 18.24292876 -4.961726281 3.471627613 0.802945719 0.936488743 0.256454439 0.077329689 0.2551164 6.422524171 0.019886804 0.044278791 1.09E-05 4.961726281 0.133543024 EEDCHS(ph)PTSKPPKPDQPLK ddPTM_HeLa_A485_30min_R1 6 EEDCHSPTSKPPKPDQPLK 19 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 EEDCHS(0.952)PT(0.026)S(0.022)KPPKPDQPLK;EEDCHS(0.968)PT(0.027)S(0.005)KPPKPDQPLK;EEDCHS(0.999)PT(0.001)SKPPKPDQPLK;EEDCHS(0.976)PT(0.023)S(0.001)KPPKPDQPLK;EEDCHS(0.985)PT(0.007)S(0.007)KPPKPDQPLK;EEDCHS(0.989)PT(0.01)SKPPKPDQPLK ;;;;; 175.77 1.59E-13 9148510000 8417430 4785860 2404675 9239803 4474358 5794150 8480560 6827270 4298115 11172247 TRUE FALSE FALSE 10289858.26 5345524.696 3294264.349 9744550.041 4028875.207 6097522.735 6668619.076 5152871.328 5160707.256 8387211.433 1.226850944 0.637342308 0.392772303 1.161834314 0.480359323 0.727002387 0.795093713 0.614372413 0.615306684 1 22.99975979 -4.257057381 24.26970668 0.701365143 1.226851265 0.332037214 0.217670118 329.735155 1826136.033 0.051140236 0.387437696 5.53E-05 4.257057381 0.525486122 EEDCHS(ph)PTSKPPKPDQPLK ddPTM_HeLa_A486_30min_R1 7 EEDCHSPTSKPPKPDQPLK 19 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 EEDCHS(0.941)PT(0.033)S(0.027)KPPKPDQPLK;EEDCHS(0.843)PT(0.157)S(0.001)KPPKPDQPLK;EEDCHS(0.934)PT(0.065)S(0.001)KPPKPDQPLK;EEDCHS(0.997)PT(0.003)S(0.001)KPPKPDQPLK;EEDCHS(0.977)PT(0.018)S(0.004)KPPKPDQPLK;EEDCHS(0.789)PT(0.106)S(0.106)KPPKPDQPLK;EEDCHS(0.967)PT(0.026)S(0.007)KPPKPDQPLK ;;;;;; 202.47 6.60E-26 12151740000 10047370 10236700 2619550 2515709 4921870 10693380 11075810 9437580 6857810 12979600 TRUE FALSE FALSE 9343101.248 9425506.611 3633909.914 5856697.689 4304523.17 9374139.498 8304525.19 7288849.055 7452250.492 9729423.677 0.96029339 0.968763097 0.373496934 0.601957308 0.442423242 0.963483533 0.853547493 0.749155273 0.765949838 1 23.21392292 -6.285349737 24.99684936 0.849944439 0.665834355 0.205149179 0.192499428 1546.631456 1616905.385 0.073277305 0.064658043 5.18E-07 6.285349737 -0.184110084 EEDCHSPT(ph)SKPPKPDQPLK ddPTM_HeLa_A485_30min_R1 1 EEDCHSPTSKPPKPDQPLK 19 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 EEDCHS(0.408)PT(0.54)S(0.052)KPPKPDQPLK 141.7 2.75E-08 728600000 988630 570470 270110 1113400 567070 621050 984850 885030 496730 1307300 TRUE FALSE FALSE 1208547.333 637181.5041 370034.9292 1174222.223 510610.5197 653567.2177 774428.752 667975.0048 596419.1547 981414.1691 1.231434567 0.649248324 0.377042579 1.196459415 0.520280363 0.665944347 0.789094733 0.680624986 0.607714025 1 19.90450257 -4.257311352 24.17736496 0.709021016 1.231434898 0.322310012 0.221586849 299.3507872 1753151.347 0.052389201 0.388707796 5.53E-05 4.257311352 0.522413881 EEDEDDDRKS(ph)EDDKEEEER ddPTM_HeLa_A485_30min_R1 1 EEDEDDDRKSEDDKEEEER 19 3 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12;H0YFJ7 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 0 EEDEDDDRKS(1)EDDKEEEER 229.2 2.26E-34 516370000 299880 212050 68835 663200 145760 234750 415070 374270 93542 666300 TRUE FALSE FALSE 366587.2714 236847.4029 94299.93096 699428.9367 131247.6226 247041.147 326386.9037 282479.6957 112315.0214 500203.6723 0.73287601 0.473501927 0.188523068 1.398288288 0.262388363 0.493881114 0.652508012 0.564729352 0.224538578 1 18.93215612 -10.18513036 4.386630745 1.000099113 0.559044831 0.140406548 0.330463963 217723435.9 56.90071399 258283.3901 0.07725636 6.53E-11 10.18513036 -0.441054281 EEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_A485_30min_R1 10 EEDEENDNDNESDHDEADS 19 0 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(0.999)DHDEADS(0.001);EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(0.949)DHDEADS(0.051);EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS ;;;;;;;;; 301.7 2.67E-79 4348849000 2124857 2718947 2162314 2310002 2838252 2823440 3451931 3987636 2102125 2981048 TRUE FALSE FALSE 2597524.109 3036904.2 2962243.93 2436191.56 2555665.665 2971270.953 2714397.742 3009662.019 2524002.206 2237927.596 1.160682818 1.357016289 1.323654946 1.088592663 1.141978708 1.327688598 1.212906864 1.344843338 1.127830145 1 21.09373193 -8.005577998 7.353574514 1.000025491 1.243894257 0.434100714 0.088754832 0.101810245 43.71573954 0.087945721 0.022762371 9.87E-09 8.005577998 0.243868767 EEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_A486_30min_R1 10 EEDEENDNDNESDHDEADS 19 0 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 EEDEENDNDNES(0.995)DHDEADS(0.005);EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(0.999)DHDEADS(0.001);EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(0.997)DHDEADS(0.003);EEDEENDNDNES(0.936)DHDEADS(0.064);EEDEENDNDNES(1)DHDEADS;EEDEENDNDNES(1)DHDEADS ;;;;;;;;; 330.09 7.58E-102 4804844000 4267147.9 4567868.3 3024393.7 1703114 4468694.8 4283801.2 5055474.5 5120015.1 3543161.7 5440681.1 TRUE FALSE FALSE 3968042.868 4205893.78 4195519.937 3964935.463 3908189.429 3755309.362 3790541.309 3954299.431 3850285.809 4078299.14 0.972965134 1.031286239 1.02874257 0.972203197 0.958289055 0.920802823 0.929441706 0.969595239 0.944091073 1 21.95953617 -5.488082394 3.200161006 0.94961327 1.012726168 0.494934265 0.025544059 0.18988926 3.93528365 0.007622115 0.011244087 3.25E-06 5.488082394 0.063112898 EEDEEPES(ph)PPEK ddPTM_HeLa_A485_30min_R1 3 EEDEEPESPPEK 12 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EEDEEPES(1)PPEK;EEDEEPES(1)PPEK;EEDEEPES(1)PPEK ;; 329.46 4.37E-73 4620700000 2305490 2007980 1079650 2922980 1500950 1884600 2648900 2357730 1268030 3204400 TRUE FALSE FALSE 2818338.297 2242795.794 1479057.463 3082654.996 1351510.148 1983274.742 2082940.875 1779493.021 1522511.99 2405602.053 1.171572951 0.932322032 0.614838793 1.281448439 0.561817839 0.824440077 0.865870925 0.739728759 0.632902682 1 21.19796657 -4.367988927 3.582071484 0.813591993 1.179291699 0.224811267 0.19996421 0.351712553 7.291480762 0.048433512 0.278642502 4.29E-05 4.367988927 0.365699706 EEDEEPES(ph)PPEK ddPTM_HeLa_A486_30min_R1 4 EEDEEPESPPEK 12 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EEDEEPES(1)PPEK;EEDEEPES(1)PPEK;EEDEEPES(1)PPEK;EEDEEPES(1)PPEK ;;; 335.9 2.56E-73 6696030000 6769300 5788630 1893370 2148690 2986550 5774960 6227160 4997830 4117450 10435500 TRUE FALSE FALSE 6294807.027 5329917.877 2626533.57 5002258.909 2611949.051 5062504.151 4669058.704 3859933.211 4474353.881 7822382.876 0.804717325 0.681367553 0.335771543 0.639480193 0.333907083 0.647181841 0.59688445 0.493447236 0.57199372 1 22.89917672 -10.05512067 2.582863929 1.001592688 0.560067265 0.461915738 0.139948459 361683.8664 450130.9241 4993.939034 0.036114035 8.81E-11 10.05512067 -0.441525423 EEDEEPES(ph)PPEKK ddPTM_HeLa_A485_30min_R1 9 EEDEEPESPPEKK 13 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK ;;;;;;;; 306.14 5.03E-58 74256940000 40715460 27169940 11369770 63302700 21341460 30165060 50777610 42565160 18350820 61472690 TRUE FALSE FALSE 49772473.61 30347228.14 15575921.06 66760766.21 19216629.31 31744455.9 39928558.81 32125987.77 22033661.25 46148679.7 1.078524325 0.657596888 0.337516071 1.446645205 0.416406914 0.687873545 0.865215626 0.696140994 0.477449439 1 25.45978604 EEDEEPES(ph)PPEKK ddPTM_HeLa_A486_30min_R1 8 EEDEEPESPPEKK 13 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK ;;;;;;; 297.16 2.97E-57 33937900000 13179030 10061710 2557863 5841340 4829280 11384620 14719240 11454970 6943710 25135590 TRUE FALSE FALSE 12255248.05 9264383.455 3548336.056 13598934.72 4223546.671 9980101.335 11036330.47 8846923.391 7545596.374 18841474.66 0.650439962 0.491701612 0.188325814 0.721755328 0.224162214 0.52968791 0.58574664 0.469545168 0.400478015 1 24.16740855 -10.37768942 3.01255688 1.00704199 0.4704839 0.491534227 0.160608714 31966087.19 39772421.16 1969173.521 0.039514992 4.19E-11 10.37768942 -0.53655809 EEDEHPY(ph)ELLLTAETK ddPTM_HeLa_A486_30min_R1 2 EEDEHPYELLLTAETK 16 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 EEDEHPY(1)ELLLTAETK;EEDEHPY(1)ELLLTAETK ; 261.39 1.60E-49 118024000 246260 250380 141946 122174 235240 239700 290520 281820 186195 266090 TRUE FALSE FALSE 228998.4457 230538.9769 196911.2926 284427.2463 205734.0057 210128.2511 217828.8232 217655.7381 202334.5325 199459.332 1.148095922 1.155819457 0.987225269 1.42599117 1.031458411 1.053489195 1.092096424 1.091228652 1.014414971 1 17.6057351 EEDEPEERS(ph)GDET(ph)PGSEVPGDK ddPTM_HeLa_A486_30min_R1 2 EEDEPEERSGDETPGSEVPGDK 22 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 2 0 EEDEPEERS(0.998)GDET(0.979)PGS(0.024)EVPGDK;EEDEPEERS(0.999)GDET(0.955)PGS(0.046)EVPGDK ; 70.213 0.00066364 139550000 210884 232540 113856 143637 222464 280130 348950 325090 199580 362600 TRUE FALSE FALSE 196102.1206 214112.6835 157944.0924 334394.195 194560.4907 245570.4088 261639.0192 251074.1037 216879.7551 271802.5999 0.721487288 0.787750682 0.581098534 1.230283283 0.715815415 0.903488079 0.962606757 0.923736947 0.797931128 1 18.05219973 -5.216973154 24.99986386 0.921135167 0.705876053 0.387656324 0.135529531 494.2014344 277849.9119 0.035009083 0.060637104 6.07E-06 5.216973154 -0.215259115 EEDEPEERS(ph)GDETPGSEVPGDK ddPTM_HeLa_A485_30min_R1 5 EEDEPEERSGDETPGSEVPGDK 22 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(0.999)GDET(0.001)PGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(0.999)GDET(0.001)PGSEVPGDK ;;;; 309.19 1.70E-102 21501590000 4421220 2904390 2839780 7781630 5613680 4213710 6829650 5971760 3800610 9782340 TRUE FALSE FALSE 5404705.136 3244033.146 3890332.795 8206720.743 5054762.308 4434333.34 5370439.484 4507176.497 4563357.566 7343782.669 0.735956574 0.441738719 0.529745088 1.117505938 0.688304997 0.603821428 0.731290634 0.613740452 0.621390606 1 22.80809193 -10.54993056 2.887593813 1.016211801 0.675783252 0.245751711 0.170313825 53006432.43 57322282.02 6696486.725 0.044169599 2.82E-11 10.54993056 -0.340428549 EEDEPEERS(ph)GDETPGSEVPGDK ddPTM_HeLa_A486_30min_R1 6 EEDEPEERSGDETPGSEVPGDK 22 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK;EEDEPEERS(1)GDETPGSEVPGDK ;;;;; 314.57 1.17E-102 27213860000 7286800 7719250 4514930 4574270 8231030 9853930 12882990 11918110 7213570 11927650 TRUE FALSE FALSE 6776032.949 7107548.517 6263231.81 10649131.73 7198617.466 8638252.304 9659529.64 9204616.524 7838848.056 8940888.804 0.757870173 0.794948765 0.700515569 1.191059632 0.805134436 0.966151408 1.08037689 1.029496812 0.876741477 1 23.09198682 -5.235552442 24.99924016 0.988668417 0.7554952 0.544315426 0.101228658 591.6752221 571385.2517 0.026788163 0.04637851 5.81E-06 5.235552442 -0.233173217 EEDEPEERS(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_A486_30min_R1 2 EEDEPEERSGDETPGSEVPGDKAAEEQGDDQDSEK 35 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 EEDEPEERS(0.72)GDET(0.14)PGS(0.14)EVPGDKAAEEQGDDQDSEK;EEDEPEERS(1)GDETPGSEVPGDKAAEEQGDDQDSEK ; 358.92 9.47E-150 2226110000 209269 202734 102806 327951 335703 382031 731800 724020 191106 720730 TRUE FALSE FALSE 194600.3238 186668.6195 142615.2364 763486.5017 293595.9994 334899.8994 548695.8998 559176.4512 207671.222 540254.5168 0.360201197 0.345519776 0.26397787 1.413197813 0.543440157 0.619892826 1.015624826 1.035024111 0.384395161 1 19.0432797 -5.1819871 24.99993871 0.843710122 0.325459406 0.43777109 0.27776179 103.0184953 32414.14223 0.073642305 0.127552216 6.58E-06 5.1819871 -0.518250716 EEDES(ph)DDDNM ddPTM_HeLa_A486_30min_R1 1 EEDESDDDNM 10 0 H0YJ03;G3V4X5;P25788-2;P25788 H0YJ03 PSMA3 Proteasome subunit alpha type-3 1 0 EEDES(1)DDDNM 168.85 7.89E-10 0 79019 70070 42987 16585 46919 62072 61042 51847 54607 94630 TRUE FALSE FALSE 73480.17615 64517.39801 59632.71763 38610.71816 41033.98152 54414.18774 45768.64596 40042.56991 59340.37873 70934.03206 1.035894535 0.909540825 0.840678528 0.544318672 0.578480883 0.767109752 0.645228315 0.564504354 0.836557249 1 16.11419034 -4.87134371 2.516957901 0.682504776 0.992333894 0.373425045 0.136613985 0.259898912 3.271081086 0.036157253 0.100544455 1.34E-05 4.87134371 0.309829118 EEDFRRPS(ph)EEDFR ddPTM_HeLa_A485_30min_R1 2 EEDFRRPSEEDFR 13 2 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 EEDFRRPS(1)EEDFR;EEDFRRPS(1)EEDFR ; 133.71 1.04E-05 1028860000 906520 1029490 951210 1034540 1054240 945070 1118270 971170 898440 1202820 TRUE FALSE FALSE 1108172.247 1149879.9 1303102.162 1091054.301 949276.1639 994552.4038 879342.4791 732989.0348 1078748.667 902979.1103 1.227240181 1.273429127 1.443114406 1.208282991 1.051271456 1.101412416 0.973823723 0.811745285 1.194655175 1 19.78433309 -5.708750714 2.518510477 1.007055966 1.313401073 0.615224356 0.105259139 0.184551661 2.391579516 0.034435074 0.045077114 1.96E-06 5.708750714 0.306345107 EEDFRRPS(ph)EEDFR ddPTM_HeLa_A486_30min_R1 2 EEDFRRPSEEDFR 13 2 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 EEDFRRPS(1)EEDFR;EEDFRRPS(1)EEDFR ; 123.63 2.39E-05 1052460000 811510 899660 619420 285280 832960 824310 822730 800350 777970 913620 TRUE FALSE FALSE 754627.3396 828367.6651 859276.0126 664146.2573 728482.3898 722615.0132 616874.252 618127.7765 845405.066 684843.6053 1.101897329 1.209572023 1.254704002 0.969777993 1.063720803 1.055153334 0.900752007 0.902582388 1.234449821 1 19.38541504 -5.265575824 24.98502627 1.012563229 1.190809211 0.396920123 0.096223979 338.6321545 2045413.405 0.026967548 0.041660434 5.43E-06 5.265575824 0.178245981 EEDGADAS(ph)EEDLTR ddPTM_HeLa_A485_30min_R1 2 EEDGADASEEDLTR 14 0 Q86X53;E5RHA3 Q86X53 ERICH1 Glutamate-rich protein 1 1 0 EEDGADAS(1)EEDLTR;EEDGADAS(1)EEDLTR ; 300.51 3.41E-58 3871400000 1059240 1189270 1127890 1260570 1551750 1201560 1591710 1668240 1139930 1650280 TRUE FALSE FALSE 1294864.284 1328344.781 1545143.446 1329431.747 1397252.321 1264471.824 1251628.155 1259101.524 1368703.495 1238895.567 1.045176299 1.07220077 1.247194265 1.073078137 1.127820906 1.020644401 1.01027737 1.016309653 1.104777135 1 20.24062315 -6.262351706 24.97157668 1.030163291 1.11604913 0.338746588 0.057692978 97.14985963 2659079.831 0.020116946 0.018797609 5.47E-07 6.262351706 0.085885838 EEDGADAS(ph)EEDLTR ddPTM_HeLa_A486_30min_R1 2 EEDGADASEEDLTR 14 0 Q86X53;E5RHA3 Q86X53 ERICH1 Glutamate-rich protein 1 1 0 EEDGADAS(1)EEDLTR;EEDGADAS(1)EEDLTR ; 278.62 5.16E-49 3139000000 1012240 1262080 911220 465980 1348410 1130540 1326330 1373860 988390 1250660 TRUE FALSE FALSE 941287.2032 1162068.184 1264068.787 1084824.989 1179279.844 991065.4693 994468.2055 1061062.069 1074064.441 937486.5956 1.004054039 1.23955712 1.348359319 1.1571632 1.257916486 1.057151616 1.060781253 1.131815723 1.145685118 1 19.83843854 -6.267061468 24.88442431 1.086181129 1.209235008 0.310068649 0.09055048 575.7322332 2548291.838 0.031879972 0.028872868 5.41E-07 6.267061468 0.123053879 EEEDITVLVT(ph)PEKPLRR ddPTM_HeLa_A485_30min_R1 3 EEEDITVLVTPEKPLRR 17 2 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 EEEDITVLVT(1)PEKPLRR;EEEDITVLVT(1)PEKPLRR;EEEDITVLVT(1)PEKPLRR ;; 208.86 2.14E-25 582539000 431759 399051 284180 455011 411745 434045 559217 598050 332411 586090 TRUE FALSE FALSE 527802.3 445716.5432 389310.0077 479867.0988 370750.2221 456770.925 439735.7196 451377.2998 399122.8386 439988.5492 1.1995819 1.013018507 0.884818499 1.090635426 0.84263607 1.038142756 0.999425372 1.025884198 0.907120968 1 18.74710645 -4.286661349 3.96678117 0.975817439 1.214979501 0.467288557 0.071883544 0.177577455 5.699216211 0.016847675 0.116728052 5.17E-05 4.286661349 0.239162062 EEEDITVLVT(ph)PEKPLRR ddPTM_HeLa_A486_30min_R1 3 EEEDITVLVTPEKPLRR 17 2 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 EEEDITVLVT(1)PEKPLRR;EEEDITVLVT(1)PEKPLRR;EEEDITVLVT(1)PEKPLRR ;; 225.6 2.41E-34 577233000 602158 524933 252861 236230 375092 502996 623758 550703 396631 674156 TRUE FALSE FALSE 559949.8337 483335.3973 350775.5511 549955.3784 328044.4638 440941.4676 467687.151 425319.9487 431011.2944 505342.9496 1.10805906 0.956450264 0.69413366 1.088281491 0.649152153 0.872558859 0.925484666 0.841646151 0.852908495 1 18.94690328 -4.425230101 4.067635059 0.860518229 1.098072827 0.266475455 0.122399905 0.281970492 7.70117024 0.028795111 0.135802272 3.76E-05 4.425230101 0.237554598 EEEEDGQEGS(ph)IHNLPLVTSQRPFYDGPMPTPR ddPTM_HeLa_A485_30min_R1 4 EEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPR 32 1 O75717;O75717-2;H3BSQ1 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR ;;; 200.64 2.91E-29 3250930000 696061 895146 628792 701076 595849 697724 858227 878380 542644 812639 TRUE FALSE FALSE 850897.3681 999825.538 861408.327 739374.0067 536524.1814 734255.7498 674859.7904 662955.9278 651547.6734 610063.0528 1.394769547 1.638888855 1.411998847 1.211963261 0.879456933 1.203573543 1.106213181 1.086700669 1.068000546 1 19.21859883 -5.29559336 2.780761759 1.070652385 1.514384424 0.784922198 0.099191713 0.114020002 1.751537494 0.028043137 0.048525877 5.06E-06 5.29559336 0.443732039 EEEEDGQEGS(ph)IHNLPLVTSQRPFYDGPMPTPR ddPTM_HeLa_A486_30min_R1 5 EEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPR 32 1 O75717;O75717-2;H3BSQ1 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR;EEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR ;;;; 202.68 2.51E-29 3512980000 624304 647346 351196 172872.1 476176 508432 581666 524372 509287 716531 TRUE FALSE FALSE 580543.5135 596047.9454 487188.4966 402454.9853 416449.5659 445706.8292 436127.0146 404983.9426 553432.4072 537106.9738 1.080871301 1.109737863 0.907060456 0.749301359 0.77535684 0.829828788 0.811992835 0.754009839 1.030395125 1 19.03484993 -4.864341505 3.950880545 0.833912469 1.096566691 0.517461658 0.092090174 0.148615566 4.263768683 0.0236359 0.054957159 1.37E-05 4.864341505 0.262654221 EEEEEETPKESLTEAEVATEKEGEDGDQPTT(ph)PPKPLK ddPTM_HeLa_A485_30min_R1 1 EEEEEETPKESLTEAEVATEKEGEDGDQPTTPPKPLK 37 3 P18858-2;P18858 P18858-2 LIG1 DNA ligase 1 1 0 EEEEEETPKESLTEAEVATEKEGEDGDQPT(0.093)T(0.907)PPKPLK 120.07 5.41E-06 215180000 93731 25835 26767 280420 70864 82671 212490 148150 56032 387970 TRUE FALSE FALSE 114581.1376 28856.17852 36669.22717 295738.6345 63808.53134 86999.52573 167089.7756 111815.9802 67277.10844 291256.2191 0.393403231 0.099074892 0.125900238 1.015389939 0.219080408 0.29870444 0.57368655 0.383909331 0.230989431 1 18.15192933 -10.76125702 2.576452747 1.151644614 0.374592973 0.357667994 0.25278907 40726222.5 29851509.69 39142952.25 0.064509561 1.73E-11 10.76125702 -0.777051642 EEEEGIS(ph)QES(ph)S(ph)EEEQ ddPTM_HeLa_A485_30min_R1 1 EEEEGISQESSEEEQ 15 0 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 3 0 EEEEGIS(1)QES(1)S(1)EEEQ 138.46 4.14E-06 300100000 152150 191990 170800 169520 234280 165350 249070 262400 192530 260500 TRUE FALSE FALSE 185995.2426 214441.5604 233986.0276 178780.4484 210954.2606 174007.4703 195854.1598 198045.9886 231169.005 195562.1441 0.951079992 1.096539217 1.196479148 0.914187401 1.078707035 0.88978095 1.001493211 1.012701049 1.182074404 1 17.5772676 -1.390387794 19.51499291 1.032194868 0.030870563 0 0.099449986 0 0 0.022583697 0 0.040701668 1.390387794 -1.001324305 EEEEGIS(ph)QES(ph)S(ph)EEEQ ddPTM_HeLa_A486_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 3 0 EEEEGIS(1)QES(1)S(1)EEEQ;EEEEGIS(1)QES(1)S(1)EEEQ ; 144.62 6.95E-08 741920000 474130 519970 319320 158097 507500 459680 542890 534950 414010 441030 TRUE FALSE FALSE 440895.9354 478765.6835 442969.2557 368057.8058 443844.6178 402969.3553 407053.1799 413153.5629 449896.7201 330593.2174 1.33365088 1.448201773 1.339922395 1.113325339 1.342570248 1.218928079 1.231281099 1.249733936 1.360877043 1 18.3346976 -14 0.154593744 0.006833798 1.3697496 0.492949314 0.088883479 121.7440445 1.100003637 37.54702199 0.43555602 1.00E-14 14 1.362915802 EEEEGISQES(ph)S(ph)EEEQ ddPTM_HeLa_A485_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 EEEEGISQES(1)S(1)EEEQ;EEEEGISQES(1)S(1)EEEQ ; 298.15 5.13E-67 8787100000 713710 857720 779520 735280 936150 832760 1007070 1146270 775110 1128310 TRUE FALSE FALSE 872472.3272 958022.8928 1067896.887 775446.4846 842943.619 876362.0259 791901.2675 865145.4852 930667.4673 847043.082 1.030021195 1.131020267 1.260735031 0.915474668 0.995160266 1.034613285 0.934900815 1.02137129 1.098725067 1 19.69207582 -5.270865141 24.99995024 0.999449245 1.139634979 0.455620508 0.070401945 597.1488963 1583817.629 0.020107791 0.030285322 5.36E-06 5.270865141 0.140185734 EEEEGISQES(ph)S(ph)EEEQ ddPTM_HeLa_A486_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 EEEEGISQES(1)S(1)EEEQ;EEEEGISQES(1)S(1)EEEQ ; 176.42 1.74E-12 6250600000 765880 841920 692960 360830 882920 873350 976640 906190 806470 999450 TRUE FALSE FALSE 712195.767 775203.193 961292.6701 840030.4753 772175.9407 765604.9566 732274.3422 699870.319 876375.4689 749181.2147 0.950632174 1.034733891 1.283124365 1.121264734 1.030693143 1.021922255 0.977432866 0.934180283 1.169777688 1 19.5149552 -5.839353109 5.258723667 1.015447302 1.106042386 0.123496724 0.09646412 0.408372939 19.73109633 0.031610022 0.036391632 1.45E-06 5.839353109 0.090595084 EEEEGISQES(ph)SEEEQ ddPTM_HeLa_A485_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 EEEEGISQES(0.889)S(0.111)EEEQ;EEEEGISQES(0.885)S(0.115)EEEQ ; 441.51 2.88E-192 779600000 667320 780610 644010 699330 804830 819000 859260 1009290 621730 1026630 TRUE FALSE FALSE 815763.0318 871895.5491 882256.0985 737532.6271 724698.2993 861881.5736 675672.0815 761760.045 746505.5082 770710.0347 1.058456482 1.131288695 1.144731558 0.956952153 0.940299551 1.118295513 0.876687796 0.988387345 0.96859451 1 19.55582865 -5.264070188 24.99869983 0.977971698 1.113471893 0.502288619 0.060673867 183.6341292 1744950.25 0.016623918 0.025948721 5.44E-06 5.264070188 0.135500196 EEEEGISQES(ph)SEEEQ ddPTM_HeLa_A486_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 EEEEGISQES(1)SEEEQ;EEEEGISQES(0.994)S(0.006)EEEQ ; 416.95 8.51E-153 730950000 746520 798280 518100 229506 735060 724030 772390 729960 664800 896520 TRUE FALSE FALSE 694192.803 735021.3855 718722.1952 534301.5666 642861.9206 634706.54 579129.8525 563764.0429 722425.3993 672025.5566 1.032985719 1.093740228 1.069486403 0.79506138 0.956603383 0.944467861 0.861767602 0.838902684 1.074996914 1 19.35815657 -5.2217851 24.22035341 0.917380876 1.068237854 0.407413315 0.077491427 333.8622328 203918.168 0.020316348 0.035188136 6.00E-06 5.2217851 0.150856978 EEEEIS(ph)ELQEDDRDQFSDQLASVGMLGR ddPTM_HeLa_A485_30min_R1 1 EEEEISELQEDDRDQFSDQLASVGMLGR 28 1 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 0 EEEEIS(1)ELQEDDRDQFSDQLASVGMLGR 132.57 1.94E-06 71446000 12221 15600 14433 16497 20398 16637 15270 20961 13642 18304 TRUE FALSE FALSE 14939.51929 17424.2843 19772.36731 17398.18934 18367.1035 17508.08759 12007.43976 15820.28188 16379.82427 13741.14966 1.087210289 1.268036862 1.438916524 1.266137825 1.336649695 1.274135573 0.873830797 1.151307007 1.192027208 1 13.74621509 -6.625009826 11.35219993 1.067036118 1.288718676 0.477338773 0.114433964 0.374861737 39.00068747 0.044472545 0.034433472 2.37E-07 6.625009826 0.221682557 EEEEIS(ph)ELQEDDRDQFSDQLASVGMLGR ddPTM_HeLa_A486_30min_R1 2 EEEEISELQEDDRDQFSDQLASVGMLGR 28 1 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 0 EEEEIS(1)ELQEDDRDQFSDQLASVGMLGR;EEEEIS(1)ELQEDDRDQFSDQLASVGMLGR ; 195.91 9.78E-22 177451000 54063 67356 48379 25548 72444 62119 77919 77515 51258 67103 TRUE FALSE FALSE 50273.46288 62018.46525 67112.64443 59477.03512 63357.39801 54455.38936 58422.84206 59866.52664 55701.08471 50299.97203 0.999472979 1.232972162 1.334248146 1.182446684 1.259591118 1.082612716 1.161488559 1.190190058 1.107378045 1 15.61826998 -6.265038951 24.96839114 1.123542923 1.209770014 0.190228355 0.093041846 584.2827905 4052848.44 0.032376655 0.029618679 5.43E-07 6.265038951 0.086227091 EEEELNLPIS(ph)PEEER ddPTM_HeLa_A485_30min_R1 1 EEEELNLPISPEEER 15 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 EEEELNLPIS(1)PEEER 243.29 2.68E-41 111970000 106800 128260 98319 100790 110550 108360 123720 122990 83877 118540 TRUE FALSE FALSE 130557.2915 143258.8913 134691.2895 106295.9025 99543.25384 114033.562 97286.2113 92826.50966 100710.3445 88990.15957 1.467098072 1.609828457 1.513552624 1.194468051 1.118587205 1.28141766 1.093224372 1.043109824 1.131702033 1 16.44135819 -5.298757192 3.232282072 1.122867421 1.547080208 0.858517292 0.076261668 0.087702735 1.868689906 0.022602884 0.037722789 5.03E-06 5.298757192 0.424212787 EEEELNLPIS(ph)PEEER ddPTM_HeLa_A486_30min_R1 1 EEEELNLPISPEEER 15 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 EEEELNLPIS(1)PEEER 246.45 1.76E-41 162160000 157260 183430 111430 63778 142280 155600 169370 145920 123110 170830 TRUE FALSE FALSE 146236.8861 168894.3388 154578.6802 148478.4072 124433.9157 136403.654 126991.8346 112697.2014 133781.2739 128053.0561 1.142002312 1.31894032 1.207145576 1.15950694 0.971737181 1.065212016 0.991712642 0.880082091 1.04473316 1 16.96638216 -5.619430367 2.61600405 0.987918551 1.231484952 0.743861584 0.062135828 0.133071043 1.844904931 0.019536907 0.02696874 2.40E-06 5.619430367 0.2435664 EEEEQQEGGFAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 EEEEQQEGGFASPR 14 0 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2;A0A087WWG9 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 EEEEQQEGGFAS(1)PR 255.49 1.50E-41 444450000 136250 154500 143430 147030 211770 152890 174150 198360 145390 162140 TRUE FALSE FALSE 166558.3424 172567.431 196490.7256 155061.8766 190685.4352 160895.084 136941.4298 149711.899 174568.4394 121721.482 1.368356183 1.41772371 1.61426498 1.273907236 1.566571752 1.321829815 1.125039127 1.229954619 1.434162948 1 16.89322428 -6.51391953 8.145041079 1.217119046 1.4460342 0.431800384 0.134979405 0.143275652 76.87513211 0.047833952 0.039471661 3.06E-07 6.51391953 0.228915154 EEEEQQEGGFAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EEEEQQEGGFASPR 14 0 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2;A0A087WWG9 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 EEEEQQEGGFAS(1)PR;EEEEQQEGGFAS(1)PR ; 316.96 7.15E-69 540960000 267220 326150 262850 114621 314910 314390 368090 339110 264710 347390 TRUE FALSE FALSE 248489.2579 300304.6862 364632.5594 266843.4806 275411.0514 275603.7583 275989.9887 261902.0557 287655.2759 260401.2829 0.954255122 1.153238121 1.400271747 1.024739501 1.057640916 1.058380954 1.059864167 1.005763308 1.104661516 1 17.99037703 EEEIQPGEEMPHLARPIKVES(ph)PPLEEWPSPAPSFK ddPTM_HeLa_A486_30min_R1 1 EEEIQPGEEMPHLARPIKVESPPLEEWPSPAPSFK 35 2 A0A0D9SFF0;Q08050-2;Q08050;Q08050-3 A0A0D9SFF0 FOXM1 Forkhead box protein M1 1 0 EEEIQPGEEMPHLARPIKVES(0.997)PPLEEWPS(0.003)PAPSFK 64.072 0.0020552 35725000 29675 30504 13786 17589 22361 36759 45260 38608 29470 52602 TRUE FALSE FALSE 27594.93574 28086.75195 19124.3084 40948.0809 19556.27487 32224.04832 33935.46929 29817.80121 32024.48333 39430.11682 0.699844129 0.712317239 0.485017797 1.03849758 0.495973039 0.817244556 0.860648459 0.756218942 0.812183324 1 15.26701036 -14 0.084415189 1.902045284 0.491214669 0.268270485 0.148633972 309.7202652 1.832842687 50.47436793 4.142903597 1.00E-14 14 -1.410830616 EEEPTGWEEPS(ph)PESIRR ddPTM_HeLa_A485_30min_R1 2 EEEPTGWEEPSPESIRR 17 1 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7;H7C269 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 EEEPTGWEEPS(0.999)PES(0.001)IRR;EEEPTGWEEPS(0.998)PES(0.002)IRR ; 143.52 4.85E-08 951030000 360920 617760 578520 368760 491940 428010 433610 488830 419590 370880 TRUE FALSE FALSE 441205.4088 690001.6582 792538.6222 388904.4251 442960.7263 450419.9418 340965.6812 368943.676 503797.8643 278426.4415 1.584639039 2.478218859 2.846491942 1.396794151 1.59094346 1.617734075 1.22461674 1.325102867 1.80944691 1 18.0869367 -5.283183741 24.47878581 1.443846235 2.320626833 0.556851367 0.359160267 431.3200396 485558.9378 0.100714935 0.149545229 5.21E-06 5.283183741 0.876780598 EEEPTGWEEPS(ph)PESIRR ddPTM_HeLa_A486_30min_R1 2 EEEPTGWEEPSPESIRR 17 1 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7;H7C269 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 EEEPTGWEEPS(0.998)PES(0.002)IRR;EEEPTGWEEPS(0.997)PES(0.003)IRR ; 144.57 4.54E-08 1035040000 483940 555610 441060 241343 477610 458080 495280 462520 422950 619250 TRUE FALSE FALSE 450018.3051 511581.4401 611850.244 561858.7008 417703.7003 401566.747 371355.7055 357214.2927 459611.6465 464185.7694 0.969478891 1.102104963 1.31811504 1.210417764 0.899863218 0.86509922 0.800015274 0.769550289 0.990145922 1 18.82434277 -5.808395928 6.484697105 0.868585787 1.15851463 0.588282344 0.106924724 0.133592552 13.23794414 0.034812167 0.040069387 1.55E-06 5.808395928 0.289928843 EEEQEDLTKDMDEPS(ph)PVPNVEEVTLPK ddPTM_HeLa_A485_30min_R1 3 EEEQEDLTKDMDEPSPVPNVEEVTLPK 27 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 EEEQEDLTKDMDEPS(1)PVPNVEEVTLPK;EEEQEDLTKDMDEPS(1)PVPNVEEVTLPK;EEEQEDLTKDMDEPS(1)PVPNVEEVTLPK ;; 164.7 4.85E-14 297359000 381650 274898 163583 633750 389246 435633 789525 734999 295625 887730 TRUE FALSE FALSE 466546.7258 307044.9298 224099.159 668370.1578 350491.3015 458442.0703 620836.5339 554739.3428 354954.2259 666435.2485 0.7000631 0.460727326 0.336265465 1.002903372 0.525919513 0.687901895 0.931578177 0.832397962 0.532616224 1 19.34610518 -5.252119403 24.99789197 0.771572877 0.49518951 0.345486245 0.181068654 791.4102482 2122703.549 0.048641226 0.08278877 5.60E-06 5.252119403 -0.276383367 EEEQEDLTKDMDEPS(ph)PVPNVEEVTLPK ddPTM_HeLa_A486_30min_R1 1 EEEQEDLTKDMDEPSPVPNVEEVTLPK 27 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 EEEQEDLTKDMDEPS(1)PVPNVEEVTLPK 128.6 3.47E-06 148810000 102920 96226 37605 75169 91636 144240 192670 176300 71933 225570 TRUE FALSE FALSE 95705.83948 88600.70131 52166.6631 174997.2308 80142.15841 126445.1353 144461.9281 136160.3386 78168.21036 169085.8038 0.566019366 0.523998463 0.308521839 1.034961108 0.473973312 0.74781639 0.854370532 0.805273628 0.462299073 1 17.36739601 -5.245317659 24.9963086 0.750729849 0.471961762 0.348223873 0.188335275 976.6537565 1514274.308 0.049170503 0.084828304 5.68E-06 5.245317659 -0.278768087 EEERKDDNDEEEEDIDFFEDIDS(ph)DEDEGGLFGSK ddPTM_HeLa_A485_30min_R1 2 EEERKDDNDEEEEDIDFFEDIDSDEDEGGLFGSK 34 2 U3KQ48;O00566 U3KQ48 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 1 0 EEERKDDNDEEEEDIDFFEDIDS(1)DEDEGGLFGSK;EEERKDDNDEEEEDIDFFEDIDS(1)DEDEGGLFGSK ; 316.89 3.59E-110 240950000 79197 74411.7 38864.8 140068 84062.6 113428 195933 174431 61606.9 192082 TRUE FALSE FALSE 96814.09942 83113.50102 53242.50682 147719.5602 75693.03238 119366.9147 154070.3139 131651.5238 73970.83974 144199.4924 0.671390015 0.576378596 0.369228115 1.024411097 0.524918855 0.827790117 1.06845254 0.912981881 0.512975729 1 17.13770656 -5.259062225 24.99885383 0.83119725 0.542736885 0.336253883 0.192789135 258.7408828 2720978.801 0.053460335 0.087282119 5.51E-06 5.259062225 -0.288460366 EEERKDDNDEEEEDIDFFEDIDS(ph)DEDEGGLFGSK ddPTM_HeLa_A486_30min_R1 2 EEERKDDNDEEEEDIDFFEDIDSDEDEGGLFGSK 34 2 U3KQ48;O00566 U3KQ48 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 1 0 EEERKDDNDEEEEDIDFFEDIDS(1)DEDEGGLFGSK;EEERKDDNDEEEEDIDFFEDIDS(1)DEDEGGLFGSK ; 338.79 1.00E-128 366528000 84945 69554 37368.3 88124 45479 99826 150160 122149 70755 193667 TRUE FALSE FALSE 78990.79416 64042.28773 51838.30652 205157.1255 39774.59975 87510.48308 112588.3798 94338.33919 76888.10037 145171.5226 0.54412045 0.441149108 0.357083163 1.413205027 0.273983485 0.602807503 0.77555417 0.64984053 0.529636247 1 17.14739895 -14 0.284241731 3.764388245 0.603526719 0.124472055 0.298649157 534.1183739 5.092311231 874.2516501 0.332808949 1.00E-14 14 -3.160861525 EEERPS(ph)SEDEIALHFEPPNAPLNR ddPTM_HeLa_A486_30min_R1 1 EEERPSSEDEIALHFEPPNAPLNR 24 1 P41182-2;P41182 P41182-2 BCL6 B-cell lymphoma 6 protein 1 0 EEERPS(0.5)S(0.5)EDEIALHFEPPNAPLNR 56.914 0.016711 67938000 12851 14948 13409 6249.7 16954 14692 13826 13711 14930 16471 TRUE FALSE FALSE 11950.21126 13763.46604 18601.32391 14549.61744 14827.47123 12879.45042 10366.58856 10589.30461 16224.14442 12346.55439 0.967898483 1.114761706 1.50660041 1.178435455 1.200940016 1.043161518 0.839634139 0.857672859 1.314062524 1 13.59182086 -6.3312963 3.902522334 0.985870079 1.2068851 0.213428233 0.173985378 0.346042105 10.34064082 0.06564685 0.058209191 4.66E-07 6.3312963 0.221015022 EEET(ph)SIDVAGKPNEVTK ddPTM_HeLa_A485_30min_R1 1 EEETSIDVAGKPNEVTK 17 1 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 EEET(0.541)S(0.459)IDVAGKPNEVTK 88.036 0.0012034 104870000 107610 71586 30061 139230 58703 102720 121540 130190 54607 299670 TRUE FALSE FALSE 131547.4732 79957.35998 41181.81484 146835.7824 52858.3232 108098.2604 95571.98611 98260.69837 65566.12401 224967.784 0.584739161 0.355416934 0.183056499 0.652696932 0.234959523 0.480505513 0.42482521 0.436776754 0.291446726 1 17.77935889 -10.51919242 3.213895956 1.017000875 0.402985503 0.621187245 0.139399974 125030978.7 158513968.5 18723101.85 0.033508258 3.03E-11 10.51919242 -0.614015372 RT(ph)QERDICSSK ddPTM_HeLa_A486_30min_R1 1 RTQERDICSSK 11 2 C9JS02;F8WEK6;B5MC74;P58658-3;P58658 C9JS02 EVA1C Protein eva-1 homolog C 1 0 RT(0.998)QERDICS(0.002)SK 51.113 0.029388 118910000 400420 277380 187040 117280 333050 182260 183970 113430 82108 82079 TRUE FALSE FALSE 372352.6258 255399.3986 259466.8971 273033.767 291275.7634 159774.6143 137938.7602 87604.46516 89225.18755 61525.88416 6.051967085 4.151088637 4.217199 4.437705703 4.734198743 2.596868236 2.241963071 1.423863572 1.450205694 1 15.90890586 -6.54746038 1.156801271 1.237166546 4.775452622 0.885784884 0.547943265 0.155158519 0.424461268 0.330169285 0.228942116 2.83E-07 6.54746038 3.538286075 up EEETS(ph)IDVAGKPNEVTK ddPTM_HeLa_A485_30min_R1 4 EEETSIDVAGKPNEVTK 17 1 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 EEET(0.013)S(0.987)IDVAGKPNEVTK;EEET(0.001)S(0.999)IDVAGKPNEVTK;EEET(0.016)S(0.984)IDVAGKPNEVTK;EEET(0.018)S(0.982)IDVAGKPNEVTK ;;; 212.18 5.26E-26 7060900000 5967300 3360740 1131770 7547000 1774460 4318160 6955000 5760600 2499070 14081800 TRUE FALSE FALSE 7294705.298 3753749.308 1550458.82 7959273.5 1597788.532 4544252.18 5469007.433 4347803.818 3000610.426 10571466.42 0.69003722 0.355083123 0.146664498 0.752901555 0.151141617 0.429860154 0.517336689 0.411277267 0.283840511 1 23.33367218 -10.37387612 3.084776094 1.006863087 0.411138022 0.45851989 0.190553657 62584598.03 80097880.79 3861259.688 0.046191164 4.23E-11 10.37387612 -0.595725065 EEETS(ph)IDVAGKPNEVTK ddPTM_HeLa_A486_30min_R1 1 EEETSIDVAGKPNEVTK 17 1 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 EEET(0.032)S(0.968)IDVAGKPNEVTK 144.57 3.75E-08 1319300000 936350 765430 305810 316980 728590 1130100 1050000 813750 870660 2233300 TRUE FALSE FALSE 870716.7003 704774.5392 424227.8219 737945.4593 637203.4484 990679.752 787278.8942 628476.889 946129.5098 1674067.144 0.520120536 0.420995384 0.253411474 0.440809953 0.380631954 0.591780178 0.470279162 0.375419165 0.565168197 1 20.67492596 -12.47416237 0.282487769 2.569035331 0.398476735 0.784564771 0.088583878 40.2408929 0.848881848 36.8380023 0.105187014 3.36E-13 12.47416237 -2.170558597 EEEWDPEYT(ph)PK ddPTM_HeLa_A485_30min_R1 2 EEEWDPEYTPK 11 0 Q9NYF8-2;Q9NYF8;H0YF14;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 Q9NYF8-2;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 0 EEEWDPEY(0.001)T(0.999)PK;EEEWDPEYT(1)PK ; 123.64 0.00033006 3229200000 2937780 2017510 1280590 4395100 2580750 2477600 3773800 3396100 1952460 4975400 TRUE FALSE FALSE 3591279.026 2253440.244 1754333.531 4635193.184 2323801.468 2607323.305 2967496.801 2563201.15 2344300.813 3735124.345 0.961488479 0.603310636 0.469685442 1.240974264 0.622148355 0.698055289 0.794484072 0.686242522 0.627636618 1 21.83272484 EEEWDPEYT(ph)PK ddPTM_HeLa_A486_30min_R1 2 EEEWDPEYTPK 11 0 Q9NYF8-2;Q9NYF8;H0YF14;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 Q9NYF8-2;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 0 EEEWDPEYT(1)PK;EEEWDPEYT(1)PK ; 205.87 3.68E-14 3541400000 4492700 4607000 2027050 2797200 3496500 5329900 6918600 5808800 3662500 7610500 TRUE FALSE FALSE 4177784.93 4241924.542 2811978.046 6512022.963 3057936.366 4672351.128 5187493.103 4486263.045 3979968.449 5704781.264 0.732330432 0.743573565 0.492916015 1.141502656 0.536030432 0.819023712 0.909323752 0.786404042 0.697654873 1 22.44374014 -14 0.139968555 1.769646219 0.684224196 0.147456286 0.172578251 274.3045158 2.349575747 59.51733759 1.030149589 1.00E-14 14 -1.085422022 EEGAAPS(ph)PTHVAELATMEVESAR ddPTM_HeLa_A485_30min_R1 5 EEGAAPSPTHVAELATMEVESAR 23 0 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 0 EEGAAPS(0.968)PT(0.032)HVAELATMEVESAR;EEGAAPS(0.854)PT(0.146)HVAELATMEVESAR;EEGAAPS(0.886)PT(0.114)HVAELATMEVESAR;EEGAAPS(0.832)PT(0.168)HVAELATMEVESAR;EEGAAPS(0.851)PT(0.149)HVAELATMEVESAR ;;;; 259.29 2.71E-61 650144000 632918 756371 552615 687243 627455 602051 727264 694143 559703 851591 TRUE FALSE FALSE 773708.4256 844822.0089 757050.2847 724785.3449 564983.3771 633573.4594 571878.1052 523903.3409 672030.2582 639305.0361 1.210233585 1.321469348 1.184176945 1.133708174 0.88374617 0.991034676 0.894530894 0.819488838 1.051188744 1 19.28614493 -5.518828421 2.1705096 0.929831954 1.253537226 0.77571099 0.072645734 0.132058811 1.245897087 0.022335181 0.034356691 3.03E-06 5.518828421 0.323705271 EEGAAPS(ph)PTHVAELATMEVESAR ddPTM_HeLa_A486_30min_R1 4 EEGAAPSPTHVAELATMEVESAR 23 0 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 0 EEGAAPS(0.974)PT(0.026)HVAELATMEVESAR;EEGAAPS(0.737)PT(0.263)HVAELATMEVESAR;EEGAAPS(0.798)PT(0.202)HVAELATMEVESAR;EEGAAPS(0.815)PT(0.185)HVAELATMEVESAR ;;; 273.94 7.23E-75 609802000 684774 816719 499085 281782.2 639948 723377 729023 686833 680031 918663 TRUE FALSE FALSE 636774.8788 751999.212 692344.078 656003.2021 559679.7546 634134.1005 546613.7346 530456.1194 738976.6346 688623.8053 0.924706456 1.092031972 1.005402475 0.952629283 0.812751099 0.920871593 0.793776995 0.770313363 1.073120954 1 19.39335653 -5.500338852 3.968087117 0.879555211 1.013319582 0.204752078 0.095856751 0.284384774 9.964835585 0.027609318 0.039693903 3.16E-06 5.500338852 0.133764371 EEGAAPSPT(ph)HVAELATMEVESAR ddPTM_HeLa_A486_30min_R1 1 EEGAAPSPTHVAELATMEVESAR 23 0 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 0 EEGAAPS(0.473)PT(0.527)HVAELATMEVESAR 74.748 0.016267 28311000 18396 20652 15796 5505.9 17724 17210 18593 19922 15175 20702 TRUE FALSE FALSE 17106.5354 19015.46031 21912.63423 12818.01345 15500.89065 15086.80518 13940.83474 15386.19549 16490.38122 15518.08445 1.102361277 1.225374199 1.41207082 0.826004878 0.998892015 0.972207957 0.898360541 0.991500951 1.062655721 1 13.92166286 -5.265240991 24.9999961 0.962909486 1.244479308 0.66303398 0.092240249 192.447942 1265569.699 0.025857938 0.040091865 5.43E-06 5.265240991 0.281569823 EEGAQTLEEDRAQT(ph)PHEDGGPQPHR ddPTM_HeLa_A486_30min_R1 2 EEGAQTLEEDRAQTPHEDGGPQPHR 25 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EEGAQTLEEDRAQT(1)PHEDGGPQPHR;EEGAQTLEEDRAQT(1)PHEDGGPQPHR ; 249.22 1.34E-49 3778700000 1455050 1672420 1680730 642430 2372400 1713830 1951650 2170310 1495120 1642590 TRUE FALSE FALSE 1353058.509 1539891.348 2331553.668 1495609.507 2074831.47 1502395.08 1463326.528 1676177.791 1624718.205 1231274.773 1.098908659 1.250648014 1.89360955 1.214683789 1.685108407 1.220194804 1.188464639 1.361335283 1.319541537 1 20.23172132 EEGELEDGEIS(ph)DDDNNSQIR ddPTM_HeLa_A485_30min_R1 2 EEGELEDGEISDDDNNSQIR 20 0 O60293-2;O60293;G3V1X1;O60293-4 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 EEGELEDGEIS(1)DDDNNSQIR;EEGELEDGEIS(1)DDDNNSQIR ; 358.57 4.29E-128 375930000 270720 310730 235560 258280 290030 262480 275960 311150 221670 345320 TRUE FALSE FALSE 330940.73 347067.1705 322703.4465 272389.1824 261153.5948 276223.0469 216998.8916 234839.9746 266157.1357 259238.0791 1.276589964 1.33879703 1.244814988 1.050729828 1.007389021 1.0655188 0.837064109 0.905885337 1.02668997 1 17.98391812 -5.332122669 1.427886073 0.957542444 1.323469977 0.835044855 0.062589513 0.165313984 0.658825971 0.02211191 0.048008305 4.65E-06 5.332122669 0.365927533 EEGELEDGEIS(ph)DDDNNSQIR ddPTM_HeLa_A486_30min_R1 2 EEGELEDGEISDDDNNSQIR 20 0 O60293-2;O60293;G3V1X1;O60293-4 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 EEGELEDGEIS(1)DDDNNSQIR;EEGELEDGEIS(1)DDDNNSQIR ; 407.45 5.37E-175 438110000 457130 460920 275950 121792 339000 385800 415290 381870 350230 499760 TRUE FALSE FALSE 425087.5476 424395.0206 382805.2302 283537.931 296479.459 338203.9185 311380.0495 294926.5372 380588.2184 374616.8431 1.134726202 1.132877574 1.021858032 0.756874487 0.791420526 0.902799553 0.831196075 0.787275166 1.015939954 1 18.51505624 -5.030183837 4.118481766 0.857464472 1.127055139 0.627203956 0.082660223 0.122628588 4.672702475 0.022144727 0.043680854 9.33E-06 5.030183837 0.269590667 EEGFPIRPHYFWPLLVGR ddPTM_HeLa_A485_30min_R1 2 EEGFPIRPHYFWPLLVGR 18 1 P42704;B8ZZ38;A0A0C4DG06 P42704 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" 0 0 ; ; 157.12 3.29E-14 54630000 46669 53275 44875 55054 43910 50818 54171 53230 44135 83740 FALSE FALSE TRUE 57050.35804 59505.04782 61476.1299 58061.46062 39538.16622 53478.7519 42596.92331 40175.25904 52992.48967 62865.15912 0.907503597 0.9465505 0.977904626 0.923587269 0.628936072 0.850689836 0.677591911 0.639070347 0.842954832 1 15.93997305 -5.639358903 8.050608033 0.754566327 0.94511637 0.357898404 0.107187823 0.226780163 15.02958476 0.029998634 0.038743467 2.29E-06 5.639358903 0.190550043 EEGGEGT(ph)PVKQDLSAPPGYTLTENVAR ddPTM_HeLa_A486_30min_R1 2 EEGGEGTPVKQDLSAPPGYTLTENVAR 27 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 EEGGEGT(0.977)PVKQDLS(0.023)APPGYTLTENVAR;EEGGEGT(1)PVKQDLSAPPGYTLTENVAR ; 111.9 0.00040088 242640000 146165 129332 70082 58747 135934 128278 187495 157045 96613 165756 TRUE FALSE FALSE 135919.5883 119083.2613 97219.62726 136765.9849 118883.8902 112452.3646 140581.7679 121289.2818 104987.4926 124249.6187 1.093923585 0.958419531 0.78245413 1.100735651 0.95681493 0.905051989 1.131446272 0.976174277 0.844972353 1 16.9228819 -4.260129924 23.91694654 0.963152645 1.093923612 0.137056925 0.099416251 131.7910837 2406624.081 0.024617095 0.149017716 5.49E-05 4.260129924 0.130770967 EEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_A485_30min_R1 3 EEGSDIEDEDMEELLNDTR 19 0 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR ;; 300.37 3.23E-79 869168000 222328 227043 220650 284293 308617 261133 304450 321129 217599 367620 TRUE FALSE FALSE 271784.0966 253593.7038 302277.617 299823.2067 277890.0079 274805.5201 239401.7704 242371.6092 261269.1234 275979.0995 0.984799563 0.918887351 1.0952917 1.086398235 1.006924105 0.995747579 0.867463409 0.878224509 0.946698949 1 18.07419949 -6.61869668 5.699249722 0.913444895 1.019145768 0.373684384 0.05806795 0.218945343 10.6997436 0.023873211 0.01834587 2.41E-07 6.61869668 0.105700873 EEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_A486_30min_R1 4 EEGSDIEDEDMEELLNDTR 19 0 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR ;;; 277.44 1.71E-69 1178110000 379469 431479 319986 151699 462950 438412 494680 468676 379422 506363 TRUE FALSE FALSE 352870.1827 397287.0326 443893.1487 353162.9384 404882.4942 384325.1849 370905.8318 361968.7059 412310.6045 379566.4089 0.92966652 1.046686491 1.169474269 0.93043781 1.066697381 1.0125374 0.977182973 0.953637354 1.086267369 1 18.5339928 -6.514598789 23.40742161 0.999615769 1.032736039 0.022252781 0.071595724 653.2567185 1846776.361 0.026412667 0.021499813 3.06E-07 6.514598789 0.03312027 EEGS(ph)LSDTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A486_30min_R1 2 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 EEGS(0.408)LS(0.264)DT(0.328)EADAVSGQLPDPTTNPSAGK;EEGS(0.332)LS(0.332)DT(0.332)EADAVS(0.004)GQLPDPTTNPSAGK ; 149.99 2.27E-09 518010000 342191 372860 162687 105120 193564 353100 331410 290267 271489 445820 TRUE FALSE FALSE 318205.178 343313.2157 225683.7633 244724.6725 169285.3982 309538.1121 248487.7127 224179.5406 295021.8851 334183.7702 0.952186211 1.027318638 0.675328318 0.732305678 0.506563793 0.926251182 0.74356607 0.670827133 0.882813324 1 18.35028214 -4.75606464 24.99985911 0.749731436 0.989752507 0.292724536 0.136220683 141.2625518 657043.2951 0.033528411 0.083418945 1.75E-05 4.75606464 0.24002107 EEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A485_30min_R1 3 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 EEGS(0.191)LS(0.607)DT(0.202)EADAVSGQLPDPTTNPSAGK;EEGS(0.06)LS(0.546)DT(0.394)EADAVSGQLPDPTTNPSAGK;EEGS(0.008)LS(0.752)DT(0.24)EADAVSGQLPDPTTNPSAGK ;; 184.82 1.75E-20 667570000 1019630 743930 508560 1110460 618050 653560 830200 564160 621250 1355190 TRUE FALSE FALSE 1246443.176 830926.1422 696697.5069 1171121.618 556514.7719 687779.391 652820.9879 425798.8754 745929.1766 1017366.073 1.225166839 0.816742531 0.684805131 1.151130993 0.547015265 0.676039244 0.641677568 0.418530642 0.733196433 1 19.95640746 -5.776306773 24.99939768 0.639281223 0.938220334 0.338387421 0.201043376 267.5987032 449963.2582 0.06057115 0.068956816 1.67E-06 5.776306773 0.298939111 EEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A486_30min_R1 1 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 EEGS(0.055)LS(0.943)DT(0.002)EADAVSGQLPDPTTNPSAGK 222.09 1.73E-38 428520000 352370 372990 141020 88856 205470 342910 336000 279570 262700 376780 TRUE FALSE FALSE 327670.6826 343432.914 195626.7206 206861.2585 179698.0367 300605.2507 251929.2462 215918.014 285471.0475 282431.8356 1.160176161 1.215985136 0.692651097 0.73242897 0.636252766 1.064346199 0.892000173 0.764496019 1.010760869 1 18.10754319 -2.248552543 8.720737934 0.902929237 0.962829221 0 0.193642088 0 0 0.047022309 0 0.005642187 2.248552543 0.059899984 EEGSLSDT(ph)EADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A485_30min_R1 1 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 EEGS(0.082)LS(0.341)DT(0.576)EADAVSGQLPDPTTNPSAGK 209.96 1.01E-28 246660000 368690 258290 180520 390490 222360 265790 315730 195960 228290 451640 TRUE FALSE FALSE 450703.8185 288494.7687 247301.8601 411821.4799 200221.0576 279706.3534 248271.7062 147900.5027 274105.709 339054.4598 1.32929624 0.850880324 0.729386837 1.214617499 0.590527722 0.824959959 0.732247281 0.436214592 0.808441538 1 18.3711575 -5.77402135 24.99624959 0.708529752 0.996629309 0.315486934 0.211656201 282.4030042 561040.2829 0.064557209 0.073689181 1.68E-06 5.77402135 0.288099557 EEGSLSDT(ph)EADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A486_30min_R1 1 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 EEGS(0.018)LS(0.383)DT(0.599)EADAVSGQLPDPTTNPSAGK 206.41 1.67E-28 396690000 478550 485040 206060 123360 248870 462410 424670 354820 361630 591450 TRUE FALSE FALSE 445006.1162 446603.6639 285851.9505 287188.3143 217654.404 405362.5556 318413.0743 274035.2317 392976.3796 443347.0703 1.003742093 1.007345472 0.644758857 0.647773118 0.490934571 0.914323298 0.718202726 0.61810543 0.886385421 1 18.75807702 -4.752338628 24.96279059 0.71967105 1.005543968 0.334551527 0.147544325 190.8418185 523455.7424 0.036555422 0.093815304 1.77E-05 4.752338628 0.285872918 EEHGGLIRS(ph)PR ddPTM_HeLa_A485_30min_R1 11 EEHGGLIRSPR 11 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR ;;;;;;;;;; 136.14 1.02E-05 1.39E+11 6871090 10022340 9803600 7380200 11702160 9636220 11630080 12051840 9112230 10364120 TRUE FALSE FALSE 8399540.266 11194365.48 13430359.6 7783361.638 10537051.86 10140757.58 9145218.399 9096107.343 10940970.98 7780535.621 1.079558102 1.438765404 1.726148463 1.000363216 1.354283609 1.303349547 1.175397022 1.169084982 1.406197659 1 22.89143804 -13.77639491 0.154090725 2.53E-09 1.386728321 0.160222941 0.197419551 223.2817479 2.145777066 68.73033188 0.945272056 1.67E-14 13.77639491 1.386728319 EEHGGLIRS(ph)PR ddPTM_HeLa_A486_30min_R1 11 EEHGGLIRSPR 11 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR ;;;;;;;;;; 144.29 4.83E-07 1.40E+11 9838199 11120950 10730398 4444114 14352540 10552080 12350750 12886480 9385663 11237199 TRUE FALSE FALSE 9148592.055 10239685.42 14885495.48 10346121.99 12552310.6 9250271.655 9260461.717 9952509.814 10199219.83 8423331.229 1.086101425 1.215633713 1.76717442 1.228269636 1.490183665 1.098172612 1.099382354 1.181540835 1.210829724 1 23.00595947 -6.276371994 24.70344361 1.128168718 1.365175909 0.305534571 0.180015441 937.3412717 1550665.12 0.064475869 0.057107887 5.29E-07 6.276371994 0.237007192 EEHGGLIRSPR ddPTM_HeLa_A485_30min_R1 1 EEHGGLIRSPR 11 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 0 96.103 0.0060695 0 34363 57933 53750 36259 47876 52449 46323 69038 51751 46304 FALSE FALSE TRUE 42006.9308 64707.7604 73634.36172 38239.73736 43109.29734 55195.14854 36425.71263 52106.32225 62136.95101 34761.26496 1.208440799 1.861490382 2.118287749 1.100067486 1.240153297 1.587834867 1.047882252 1.498976585 1.78753423 1 15.08519296 -5.273703464 24.83762805 1.340091391 1.742614745 0.256688525 0.315606949 950.5490203 1925081.061 0.08923501 0.133486989 5.32E-06 5.273703464 0.402523354 EEHLCTQR ddPTM_HeLa_A485_30min_R1 1 EEHLCTQR 8 0 J3KN67;A0A087WWU8;P06753-5;P06753-2;P06753-7 J3KN67 TPM3 Tropomyosin alpha-3 chain 0 0 69.954 0.033995 18794000 11471 17690 17488 12106 16533 15023 15291 17732 16115 15912 FALSE FALSE TRUE 14022.68438 19758.69162 23957.53894 12767.32013 14886.91647 15809.58105 12023.95293 13383.1992 19349.13268 11945.43124 1.173895199 1.65407939 2.005581754 1.068803618 1.246243536 1.323483492 1.006573366 1.120361327 1.619793568 1 13.54417132 -5.286696428 24.99836428 1.202184923 1.615474957 0.357849702 0.253642709 804.3823101 796142.0785 0.071503039 0.106104609 5.17E-06 5.286696428 0.413290034 EEIDIRLS(ph)R ddPTM_HeLa_A486_30min_R1 1 EEIDIRLSR 9 1 A0A1W2PQS0;X6R6F3;A0A1W2PQP6;X6R6S3;Q9BWL3-5;Q9BWL3-3;Q9BWL3-4;Q9BWL3-2;Q9BWL3 A0A1W2PQS0 C1orf43 Uncharacterized protein C1orf43 1 0 EEIDIRLS(1)R 57.859 0.01752 544740000 286690 279430 247960 113800 356830 324090 356750 326790 224620 332080 TRUE FALSE FALSE 266594.5115 257286.9491 343976.7526 264932.1511 312073.0541 284107.0709 267487.3767 252387.0508 244090.2425 248925.0065 1.070983246 1.033592216 1.381848925 1.064305089 1.253683021 1.141335999 1.07457013 1.013907981 0.980577427 1 17.92535164 -6.999389534 2.065499073 0.994427508 1.163376349 0.361498398 0.095751082 0.37221284 3.141743699 0.055683973 0.029300082 1.00E-07 6.999389534 0.16894884 EEIPVQEKT(ph)PK ddPTM_HeLa_A485_30min_R1 2 EEIPVQEKTPK 11 1 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 EEIPVQEKT(1)PK;EEIPVQEKT(1)PK ; 108.71 0.00072541 654870000 1081010 658520 427240 2064630 1160690 1051610 2070290 1894940 660080 2741260 TRUE FALSE FALSE 1321476.945 735528.1856 585293.8549 2177415.509 1045127.628 1106670.674 1627955.629 1430202.994 792552.0014 2057914.331 0.642143808 0.357414385 0.284411186 1.058069073 0.507857695 0.537763238 0.791070651 0.694976935 0.385123904 1 20.97275149 -14 0.188490469 2.667669805 0.516184324 0.230117275 0.219780282 212.4857983 2.073481889 134.1523098 0.623383861 1.00E-14 14 -2.151485481 EEIPVQEKT(ph)PK ddPTM_HeLa_A486_30min_R1 2 EEIPVQEKTPK 11 1 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 EEIPVQEKT(1)PK;EEIPVQEKT(1)PK ; 97.417 0.00074855 506250000 1393170 1198810 442823 1109700 1056560 1627470 2385000 2153080 827570 2832070 TRUE FALSE FALSE 1295515.977 1103811.93 614295.9248 2583437.681 924036.3928 1426689.298 1788247.774 1662870.685 899304.4339 2122901.238 0.6102573 0.519954442 0.289366229 1.216937291 0.435270551 0.672046948 0.842360324 0.783301011 0.423620476 1 21.01760583 -14 0.096600701 1.953107199 0.428873491 0.140360025 0.251617752 405.0346574 2.67703261 81.3626943 4.720011776 1.00E-14 14 -1.524233708 EEIQETQT(ph)PTHSR ddPTM_HeLa_A485_30min_R1 2 EEIQETQTPTHSR 13 0 H7BZL0;Q9BYG3 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 EEIQETQT(0.99)PT(0.01)HSR;EEIQETQT(0.988)PT(0.012)HSR ; 126.07 3.69E-05 847150000 410060 476060 423300 388510 599310 461940 484320 566790 391040 539100 TRUE FALSE FALSE 501276.4323 531731.0758 579896.285 409733.3175 539640.5921 486126.4641 380841.0755 427783.8638 469518.1412 404712.2914 1.238599477 1.313849584 1.432860571 1.012406409 1.333393138 1.201165555 0.941016825 1.057007343 1.160128198 1 18.62653714 -6.588312374 6.275380884 1.045535025 1.264436608 0.477002977 0.112312229 0.190471915 13.85555023 0.043352957 0.033482333 2.58E-07 6.588312374 0.218901584 EEIQETQT(ph)PTHSR ddPTM_HeLa_A486_30min_R1 2 EEIQETQTPTHSR 13 0 H7BZL0;Q9BYG3 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 EEIQET(0.085)QT(0.909)PT(0.004)HS(0.002)R;EEIQETQT(0.999)PT(0.001)HSR ; 157.07 8.73E-08 748820000 521970 648150 502850 262082 733930 701330 764700 694890 556830 614770 TRUE FALSE FALSE 485382.5985 596788.2335 697566.9868 610140.1409 641873.6558 614807.0352 573363.9718 536678.7163 605096.4727 460827.5905 1.053284587 1.295035813 1.513726611 1.324009572 1.392871584 1.334136774 1.244204956 1.164597623 1.313064767 1 18.81386757 -8.595983282 0.574856269 0.990536525 1.324581658 0.360869696 0.117285777 2.326075118 1.267726885 0.187554608 0.054498257 2.54E-09 8.595983282 0.334045133 EEISGS(ph)PER ddPTM_HeLa_A485_30min_R1 1 EEISGSPER 9 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2 Q3T8J9-3 GON4L GON-4-like protein 1 0 EEISGS(1)PER 107.11 0.0015094 0 100140 156760 124780 93764 126690 111200 127970 137360 117780 118620 TRUE FALSE FALSE 122415.7975 175091.7184 170941.3145 98886.0899 114076.2988 117022.2601 100628.1641 103672.2446 141417.3657 89050.21704 1.374682753 1.966213269 1.919605816 1.110453104 1.28103336 1.314115383 1.130015933 1.164199797 1.588063122 1 16.44233151 -5.262712159 24.99989086 1.235541933 1.774771892 0.570238167 0.209180585 77.61994674 1524618.994 0.056591432 0.089448911 5.46E-06 5.262712159 0.539229959 EEIVT(ph)PK ddPTM_HeLa_A486_30min_R1 1 EEIVTPK 7 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 EEIVT(1)PK 132.88 0.0079234 159640000 879100 789070 379410 321990 610280 847970 934020 836820 654870 1305400 TRUE FALSE FALSE 817479.6297 726541.2195 526327.713 749608.9925 533732.9918 743356.0829 700318.3169 646294.3537 711634.6589 978519.3433 0.83542511 0.742490401 0.537881767 0.766064562 0.545449608 0.759674388 0.715691848 0.660481939 0.727256608 1 19.90024084 -8.12210322 7.271872804 0.999999827 0.691967199 0.507426165 0.089427181 3.626028705 216.062504 0.083934709 0.021725929 7.55E-09 8.12210322 -0.308032628 EEKDKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_HeLa_A485_30min_R1 2 EEKDKDDQEWESPSPPKPTVFISGVIAR 28 3 P51397 P51397 DAP Death-associated protein 1 1 0 EEKDKDDQEWES(0.001)PS(0.999)PPKPTVFISGVIAR;EEKDKDDQEWES(0.05)PS(0.95)PPKPTVFISGVIAR ; 254.81 5.35E-63 13969000000 1058440 525000 236810 2965300 915030 927330 2360300 1918630 550850 4042800 TRUE FALSE FALSE 1293886.326 586394.1831 324415.8735 3127286.83 823926.4003 975883.5649 1856002.623 1448082.984 661400.5423 3035004.362 0.426321076 0.193210326 0.106891403 1.030406041 0.271474536 0.321542722 0.611532111 0.477127151 0.217924083 1 21.53326716 -10.87894454 2.560271908 1.288323612 0.411219782 0.333656181 0.251627964 56384553.83 33026373.36 98513101.38 0.065001384 1.32E-11 10.87894454 -0.87710383 EEKDNIQPTT(ph)E ddPTM_HeLa_A485_30min_R1 1 EEKDNIQPTTE 11 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EEKDNIQPT(0.096)T(0.904)E 87.363 0.0070905 341870000 650640 710980 504070 774730 578130 743230 905370 816350 566070 961780 TRUE FALSE FALSE 795372.6233 794122.9263 690546.4691 817051.5382 520569.3473 782144.3735 711930.3033 616138.8825 679675.0567 722025.9462 1.101584545 1.099853725 0.956401183 1.131609664 0.720984267 1.083263528 0.986017618 0.853347287 0.941344366 1 19.46169116 -4.958524029 1.085464832 0.941145054 1.120224185 0.215362224 0.107711109 1.06448212 2.048954174 0.036781158 0.169213996 1.10E-05 4.958524029 0.179079131 EEKDNIQPTT(ph)E ddPTM_HeLa_A486_30min_R1 1 EEKDNIQPTTE 11 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EEKDNIQPT(0.13)T(0.87)E 79.82 0.016306 456120000 793990 762440 378060 270020 551160 777720 802950 743730 648010 1177100 TRUE FALSE FALSE 738335.4012 702021.4776 524454.9568 628620.2061 482028.3734 681772.8137 602043.4173 574398.9145 704180.0286 882346.4984 0.836786231 0.795630151 0.594386624 0.712441436 0.546302812 0.772681498 0.682320855 0.65099019 0.798076526 1 19.75098579 -8.071192465 4.065685796 0.999872292 0.696543666 0.542665075 0.084255027 0.244608243 10.31836277 0.082403377 0.021631274 8.49E-09 8.071192465 -0.303328626 EEKDQLQVLVS(ph)K ddPTM_HeLa_A485_30min_R1 1 EEKDQLQVLVSK 12 1 E7EVQ3;O15123-2;O15123-3;O15123 E7EVQ3 ANGPT2 Angiopoietin-2 1 0 EEKDQLQVLVS(1)K 43.991 0.033626 664800000 313000 823390 1168200 171740 936210 618640 436050 561730 766200 254910 TRUE FALSE FALSE 382625.7702 919678.298 1600365.793 181121.7213 842997.6452 651031.0338 342884.3553 423964.8367 919969.312 191365.6283 1.999448771 4.805869822 8.362869588 0.946469452 4.405167494 3.402026998 1.79177608 2.215470148 4.807390545 1 17.5459722 -5.289414903 24.99359224 2.771639506 5.0310459 0.254212318 1.878612274 1027.546817 918017.49 0.527241691 0.782208379 5.14E-06 5.289414903 2.259406393 EEKEDITYRLPELDPRGS(ph)DEENLDSETSASTESLLEER ddPTM_HeLa_A485_30min_R1 1 EEKEDITYRLPELDPRGSDEENLDSETSASTESLLEER 38 3 Q13459;Q13459-2;M0R300 Q13459 MYO9B Unconventional myosin-IXb 1 0 EEKEDIT(0.069)Y(0.059)RLPELDPRGS(0.798)DEENLDS(0.034)ET(0.03)S(0.007)AS(0.001)T(0.002)ESLLEER 56.773 0.01319 101610000 37654 51747 32611 44441 50524 52396 74216 87391 41305 69404 TRUE FALSE FALSE 46030.0024 57798.36151 44675.16596 46868.6993 45493.65316 55139.37354 58359.14531 65958.22023 49594.53463 52102.86009 0.88344483 1.109312645 0.85744172 0.899541776 0.873150785 1.058279209 1.120075658 1.265923216 0.9518582 1 15.66907495 -6.424216836 4.648143065 1.104822478 0.930383688 0.357897156 0.102258056 0.238016211 8.469186396 0.036881329 0.031949961 3.77E-07 6.424216836 -0.174438791 EEKESEDKPEIEDVGS(ph)DEEEEK ddPTM_HeLa_A485_30min_R1 2 EEKESEDKPEIEDVGSDEEEEK 22 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EEKESEDKPEIEDVGS(1)DEEEEK;EEKESEDKPEIEDVGS(1)DEEEEK ; 272.12 3.54E-73 2687100000 1920210 1058200 395858 3847830 776540 1504070 2791730 2091500 636880 4261780 TRUE FALSE FALSE 2347354.09 1181947.285 542302.3472 4058027.21 699224.951 1582820.779 2195254.079 1578556.346 764695.9742 3199396.678 0.733686481 0.369428178 0.169501441 1.26837264 0.218549002 0.494724768 0.686146264 0.493391881 0.239012555 1 21.60936845 -10.209021 4.370675238 1.000166847 0.521133935 0.179624161 0.308228902 407162185.4 208.6320997 684909.9373 0.072069083 6.18E-11 10.209021 -0.479032912 EEKESEDKPEIEDVGS(ph)DEEEEK ddPTM_HeLa_A486_30min_R1 3 EEKESEDKPEIEDVGSDEEEEK 22 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EEKESEDKPEIEDVGS(1)DEEEEK;EEKESEDKPEIEDVGS(1)DEEEEK;EEKESEDKPEIEDVGS(1)DEEEEK ;; 233.6 8.04E-38 2815500000 749585 545985 154688 555010 277072 812640 1065770 762198 385340 2490700 TRUE FALSE FALSE 697042.9624 502719.1602 214587.3363 1292091.329 242319.0462 712384.7391 799103.0734 588662.1541 418741.5815 1867012.508 0.373346702 0.269263949 0.114936207 0.692063563 0.129789728 0.381563988 0.428011634 0.31529631 0.224284294 1 20.83230016 -10.94028579 2.885353948 1.452626908 0.326958662 0.624288925 0.156997679 24771951.41 16238148.88 75440198.09 0.03738074 1.15E-11 10.94028579 -1.125668246 EEKESEDKPEIEDVGS(ph)DEEEEKK ddPTM_HeLa_A485_30min_R1 2 EEKESEDKPEIEDVGSDEEEEKK 23 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EEKESEDKPEIEDVGS(1)DEEEEKK;EEKESEDKPEIEDVGS(1)DEEEEKK ; 182.97 5.14E-20 4327300000 1750950 777140 254688 4988700 721230 1114870 2742100 1999030 367170 5551500 TRUE FALSE FALSE 2140442.787 868019.7628 348907.6897 5261220.049 649421.8088 1173242.869 2156227.934 1508764.758 440857.6511 4167613.218 0.513589596 0.208277428 0.083718827 1.262406028 0.155825835 0.281514336 0.51737717 0.362021301 0.105781806 1 21.99078996 -10.93850365 2.734741885 1.412438324 0.392431703 0.239946096 0.326762961 90971891.01 55591500.77 239517969.2 0.083157239 1.15E-11 10.93850365 -1.020006621 EEKESEDKPEIEDVGS(ph)DEEEEKK ddPTM_HeLa_A486_30min_R1 1 EEKESEDKPEIEDVGSDEEEEKK 23 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EEKESEDKPEIEDVGS(1)DEEEEKK 238.73 6.48E-48 2374600000 1081000 529470 77692 1255100 188760 1051100 1861400 1151900 360600 4699000 TRUE FALSE FALSE 1005227.482 487512.8689 107776.4231 2921936.229 165083.9607 921425.9688 1395658.032 889637.5158 391857.0983 3522339.815 0.285386287 0.138405973 0.030597963 0.829544105 0.046867699 0.261594854 0.396230377 0.252570042 0.11124909 1 21.74810267 -10.79006212 2.788485975 1.190894267 0.265092651 0.506273352 0.218794579 233149734.4 175647650.6 301991413.3 0.053510143 1.62E-11 10.79006212 -0.925801615 EEKQDITYRLPELDPRGS(ph)DEENLDSETSASTESLLEER ddPTM_HeLa_A485_30min_R1 1 EEKQDITYRLPELDPRGSDEENLDSETSASTESLLEER 38 3 M0R0P8;M0R240;M0QXP0 M0R0P8 MYO9B 1 0 EEKQDIT(0.007)Y(0.002)RLPELDPRGS(0.988)DEENLDS(0.002)ET(0.001)SASTESLLEER 105.18 4.87E-05 88589000 33365 37777 29362 33525 41838 46446 63966 70845 34417 52205 TRUE FALSE FALSE 40786.92914 42194.69153 40224.22565 35356.38586 37672.46182 48877.84074 50299.14155 53470.15267 41324.17621 39191.25426 1.040715076 1.076635396 1.026357191 0.902149894 0.961246649 1.247161941 1.283427706 1.364338898 1.054423416 1 15.25824412 -6.263291722 24.97945164 1.218488912 1.001469724 0.413220751 0.109662252 147.1814572 1984777.913 0.037584735 0.034835227 5.45E-07 6.263291722 -0.217019188 IPCES(ph)PPLEVVDTTASTK ddPTM_HeLa_A485_30min_R1 1 IPCESPPLEVVDTTASTK 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCES(1)PPLEVVDTTASTK 103.5 0.00019031 102880000 50167 52466 41306 97903 61086 34765 58822 74447 70499 211610 TRUE FALSE FALSE 61326.47608 58601.44231 56586.80829 103251.193 55004.06335 36585.24164 46254.19917 56188.75652 84647.50264 158859.5214 0.386042181 0.368888448 0.356206589 0.649952814 0.346243416 0.230299332 0.29116416 0.353700905 0.532845006 1 17.27739204 -8.158908605 2.821958823 0.999762878 0.373583162 0.77093419 0.102908991 0.331542395 4.725868023 0.10750695 0.028818345 6.94E-09 8.158908605 -0.626179716 EEKREEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_A486_30min_R1 3 EEKREEDEENDNDNESDHDEADS 23 2 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 EEKREEDEENDNDNES(1)DHDEADS;EEKREEDEENDNDNES(0.997)DHDEADS(0.003);EEKREEDEENDNDNES(1)DHDEADS ;; 209.89 2.61E-29 994040000 405323 463307 405988 589062 1099190 804180 1235490 1356380 439683 772120 TRUE FALSE FALSE 376911.9508 426592.866 563197.4263 1371366.106 961319.3407 704968.4479 926357.3343 1047561.884 477795.0765 578776.1263 0.651222353 0.737060232 0.973083375 2.369424106 1.660951959 1.218033046 1.600545171 1.809960425 0.825526581 1 19.14264589 -5.015568006 24.21339508 1.541743187 0.734373579 0.392924915 0.41143968 420.5557572 654107.3012 0.109689549 0.198207921 9.65E-06 5.015568006 -0.807369608 EEKS(ph)PDDLKK ddPTM_HeLa_A485_30min_R1 1 EEKSPDDLKK 10 2 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 EEKS(1)PDDLKK 71.879 0.0057196 363210000 566550 232200 133710 1823200 444100 436220 1009000 705620 304760 2671000 TRUE FALSE FALSE 692577.0929 259353.7701 183174.8931 1922796.799 399883.8447 459059.8047 793418.9072 532565.5886 365922.5366 2005168.856 0.345395896 0.129342608 0.091351356 0.95892014 0.199426519 0.228938228 0.395686829 0.26559638 0.182489637 1 20.9352923 -10.17858788 4.401674096 1.000165343 0.313550142 0.438547146 0.233928949 105801161.4 48931853.01 162983.723 0.057001955 6.63E-11 10.17858788 -0.686615201 EEKS(ph)VEYEGDLK ddPTM_HeLa_A485_30min_R1 2 EEKSVEYEGDLK 12 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EEKS(1)VEYEGDLK;EEKS(1)VEYEGDLK ; 191.96 3.33E-12 658860000 88131 60323.1 44692 182723 109042.8 81425.4 174983 157375 66693.2 251745 TRUE FALSE FALSE 107735.4369 67377.3618 61225.43059 192704.6948 98186.11596 85688.70804 137596.4526 118778.5345 80077.91349 188989.6045 0.570060121 0.356513587 0.323961896 1.019657644 0.519531835 0.453404346 0.728063604 0.628492423 0.423715969 1 17.52794735 -14 0.290403345 4.375426351 0.537301828 0.311188074 0.194407948 322.9089786 3.047309396 661.1788923 0.21507576 1.00E-14 14 -3.838124523 EEKS(ph)VEYEGDLK ddPTM_HeLa_A486_30min_R1 4 EEKSVEYEGDLK 12 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EEKS(1)VEYEGDLK;EEKS(1)VEYEGDLK;EEKS(1)VEYEGDLK;EEKS(1)VEYEGDLK ;;; 163.35 1.30E-10 2432410000 2843020 2539270 947864 2480330 2345750 3802500 5573690 5050600 2042050 6522880 TRUE FALSE FALSE 2643738.979 2338048.997 1314902.325 5774333.589 2051524.162 3333386.211 4179093.81 3900688.634 2219056.538 4889508.391 0.540696276 0.478176702 0.268923217 1.180964041 0.419576775 0.68174261 0.854706338 0.797767039 0.453840419 1 22.22125799 -5.418037854 0.095636687 1.207885925 6.79E-20 0.188407934 0.245781614 71.93999811 1.752945545 6.752413036 15.8602786 3.82E-06 5.418037854 -1.207885925 EELDEDDIIS(ph)DPDSHFPAWR ddPTM_HeLa_A485_30min_R1 2 EELDEDDIISDPDSHFPAWR 20 0 Q8IXW5-2;Q8IXW5 Q8IXW5-2 RPAP2 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 1 0 EELDEDDIIS(1)DPDSHFPAWR;EELDEDDIIS(1)DPDSHFPAWR ; 201.32 2.09E-26 101439000 77588 90267 72229 85469 82023 82625 97653 100181 66406 103170 TRUE FALSE FALSE 94847.18292 100822.9404 98949.5128 90137.95505 73856.50212 86951.11724 76788.6388 75611.45267 79733.07509 77451.6177 1.224599121 1.301753836 1.277565476 1.163796932 0.953582434 1.122650757 0.99144009 0.976241103 1.029456549 1 16.24100775 -5.545810115 3.612962966 1.015851976 1.268189655 0.85950461 0.046769259 0.078958697 2.209142285 0.014101644 0.019641491 2.85E-06 5.545810115 0.252337679 EELDEDDIIS(ph)DPDSHFPAWR ddPTM_HeLa_A486_30min_R1 1 EELDEDDIISDPDSHFPAWR 20 0 Q8IXW5-2;Q8IXW5 Q8IXW5-2 RPAP2 Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 1 0 EELDEDDIIS(0.999)DPDS(0.001)HFPAWR 90.534 0.00043265 59557000 37743 48244 34610 17472 44246 44322 45762 48833 42508 57536 TRUE FALSE FALSE 35097.41061 44420.96974 48011.91889 40675.69899 38696.2541 38854.00227 34311.86358 37714.79192 46192.62767 43128.6111 0.813784857 1.029965227 1.113226641 0.943125641 0.897229313 0.900886935 0.795570799 0.874472675 1.071043711 1 15.39635764 -5.513962057 23.76445568 0.910404327 0.996437301 0.062728487 0.098336244 463.2423263 1234619.622 0.029065219 0.039648826 3.06E-06 5.513962057 0.086032974 EELDVS(ph)VR ddPTM_HeLa_A485_30min_R1 1 EELDVSVR 8 0 F5GY68;F5H0F9;Q9UJX4-2;Q9UJX4-3;Q9UJX4 F5GY68 ANAPC5 Anaphase-promoting complex subunit 5 1 0 EELDVS(1)VR 62.005 0.030048 229580000 742630 1009000 723920 610370 653220 763180 759650 793910 624810 612190 TRUE FALSE FALSE 907825.4815 1126993.773 991728.1328 643712.9676 588183.1232 803138.9247 597344.5717 599202.3277 750203.6359 459582.2995 1.975327341 2.452213181 2.157890184 1.400647867 1.279821098 1.747541029 1.299755392 1.303797662 1.632359725 1 18.80996371 -5.244161094 5.324116367 1.398976658 2.230105574 0.741756904 0.220053553 0.084113465 7.821404183 0.0581157 0.097577493 5.70E-06 5.244161094 0.831128917 EELDVS(ph)VR ddPTM_HeLa_A486_30min_R1 1 EELDVSVR 8 0 F5GY68;F5H0F9;Q9UJX4-2;Q9UJX4-3;Q9UJX4 F5GY68 ANAPC5 Anaphase-promoting complex subunit 5 1 0 EELDVS(1)VR 96.957 0.0027632 191040000 615530 634740 317330 200150 308340 417170 453910 374980 408060 681390 TRUE FALSE FALSE 572384.5256 584440.8907 440208.6744 465959.315 269665.122 365703.8069 340336.917 289605.2398 443430.9694 510765.5089 1.12064052 1.144245022 0.861860613 0.912276391 0.52796267 0.715991586 0.666327133 0.567002342 0.868169369 1 18.96230158 -5.026122118 1.478139792 0.706259357 1.156075091 0.525291294 0.141340718 0.310679098 1.264215786 0.042344512 0.134596896 9.42E-06 5.026122118 0.449815734 EELEQTYHAK(ac)LENAR ddPTM_HeLa_A486_30min_R1 1 EELEQTYHAKLENAR 15 1 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 0 1 EELEQTYHAK(1)LENAR 142.91 1.53E-06 5825300 14274 24393 30389 9064.5 34821 23472 23688 27209 22970 22391 FALSE TRUE FALSE 13273.46631 22460.00984 42156.43465 21102.61409 30453.42549 20576.26329 17761.01185 21014.10467 24961.05809 16784.14786 0.790833495 1.338168016 2.511681558 1.257294339 1.814415944 1.225934343 1.058201584 1.252020945 1.487180541 1 14.03481167 -6.351956246 9.192480321 1.210039569 1.568895287 0.13212977 0.430200267 0.856971939 81.43595366 0.155647864 0.137167085 4.45E-07 6.351956246 0.358855719 EELIAQGLLESEDRPAEDS(ph)EDEVLAELR ddPTM_HeLa_A485_30min_R1 1 EELIAQGLLESEDRPAEDSEDEVLAELR 28 1 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 0 EELIAQGLLESEDRPAEDS(1)EDEVLAELR 74.146 0.003171 13355000 5855.2 6104 8084.8 6482.9 7741.1 6543.1 7113 8174.8 5775.9 7791.1 TRUE FALSE FALSE 7157.66904 6817.809702 11075.70396 6837.044411 6970.368903 6885.686598 5593.249442 6169.917482 6935.07015 5848.922155 1.223758643 1.165652324 1.893631624 1.168940914 1.191735626 1.17725735 0.956287209 1.054881108 1.185700539 1 12.51395507 -5.499516514 24.8356109 1.102122098 1.423112732 0.368635092 0.195449645 784.6525166 834137.9808 0.056045365 0.082508086 3.17E-06 5.499516514 0.320990634 EELIAQGLLESEDRPAEDS(ph)EDEVLAELR ddPTM_HeLa_A486_30min_R1 2 EELIAQGLLESEDRPAEDSEDEVLAELR 28 1 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 0 EELIAQGLLESEDRPAEDS(1)EDEVLAELR;EELIAQGLLES(0.001)EDRPAEDS(0.999)EDEVLAELR ; 88.242 0.0013904 29966000 11067.7 18930.5 18933.6 6511.8 19196.1 19576.3 18490.9 19130.4 16411.7 14330.8 TRUE FALSE FALSE 10291.91138 17430.37824 26265.19698 15159.79949 16788.34614 17161.17514 13864.28124 14774.82553 17834.27937 10742.2744 0.958075636 1.622596629 2.445031284 1.411228099 1.562829761 1.597536471 1.290628104 1.375390814 1.660195849 1 13.39101186 -6.496809391 1.44847997 1.358323481 1.6542469 0.094252651 0.375602612 1.067542381 4.536706376 0.198809305 0.14840536 3.19E-07 6.496809391 0.295923419 EELMS(ph)SDLEETAGSTSIPK ddPTM_HeLa_A485_30min_R1 1 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.558)S(0.442)DLEETAGSTSIPK 120.24 0.00016234 149360000 76919 69838 48449 103860 85137 77339 105580 115530 75429 150290 TRUE FALSE FALSE 94029.36618 78004.94659 66372.30123 109533.6088 76660.46135 81388.35045 83021.97049 87196.08636 90566.90842 112825.4689 0.833405499 0.69137711 0.588274101 0.970823431 0.679460605 0.721365054 0.735844232 0.772840452 0.802716881 1 16.78373325 -8.359075962 1.28929384 0.999905989 0.743134991 0.383097448 0.095661657 1.367269302 3.557818951 0.089931933 0.027020011 4.37E-09 8.359075962 -0.256770998 EELMS(ph)SDLEETAGSTSIPK ddPTM_HeLa_A486_30min_R1 3 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.694)S(0.306)DLEETAGSTSIPK;EELMS(0.661)S(0.339)DLEETAGSTSIPK;EELMS(0.5)S(0.5)DLEETAGSTSIPK ;; 299.38 3.53E-78 497695000 786928 785598 423390 281660 674795 811052 945670 844070 672548 1012100 TRUE FALSE FALSE 731768.4109 723344.3534 587337.9468 655718.7143 590155.9189 710992.6504 709053.3637 651893.6869 730845.0021 758663.5723 0.964549291 0.953445479 0.774174441 0.86430763 0.77788883 0.937164609 0.934608421 0.859265834 0.963332139 1 19.53310074 EELMS(ph)SDLEETAGSTSIPKR ddPTM_HeLa_A485_30min_R1 1 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.529)S(0.471)DLEETAGSTSIPKR 169.56 8.90E-14 1635400000 310780 394430 269820 293090 375720 404650 576480 650130 264710 438540 TRUE FALSE FALSE 379911.9388 440555.1574 369637.6461 309100.7646 338311.9976 425836.8483 453310.3386 490684.5981 317834.8689 329220.0487 1.153975708 1.338178398 1.122767728 0.938888035 1.027616632 1.293471798 1.376922032 1.490445676 0.96541772 1 18.32869267 -6.278071147 24.24036972 1.265383722 1.119117422 0.064267753 0.177302543 1202.193875 1752160.099 0.064093156 0.056687383 5.27E-07 6.278071147 -0.1462663 EELMSS(ph)DLEETAGSTSIPK ddPTM_HeLa_A485_30min_R1 12 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.016)S(0.984)DLEETAGSTSIPK;EELMS(0.204)S(0.796)DLEETAGSTSIPK;EELMS(0.026)S(0.974)DLEETAGSTSIPK;EELMS(0.112)S(0.888)DLEETAGSTSIPK;EELMS(0.015)S(0.985)DLEETAGSTSIPK;EELMS(0.147)S(0.853)DLEETAGSTSIPK;EELMS(0.016)S(0.984)DLEETAGSTSIPK;EELMS(0.036)S(0.964)DLEETAGSTSIPK;EELMS(0.072)S(0.928)DLEETAGSTSIPK;EELMS(0.098)S(0.902)DLEETAGSTSIPK;EELMS(0.097)S(0.903)DLEETAGSTSIPK;EELMS(0.198)S(0.802)DLEETAGSTSIPK ;;;;;;;;;;; 385.07 1.25E-145 8160847000 3543051 3118414 2347345 4440006 3477726 3457169 4639250 4367135 2944626 6233591 TRUE FALSE FALSE 4331190.472 3483085.391 3215725.597 4682552.285 3131471.388 3638181.023 3648036.338 3296088.294 3535585.428 4679671.484 0.925533018 0.744301262 0.68716909 1.000615599 0.66916479 0.777443681 0.779549665 0.704341812 0.755520006 1 22.15797582 -4.252210643 23.90582069 0.780393823 0.925533161 0.108788207 0.112027657 1370.670972 3550401.11 0.026183619 0.307397502 5.59E-05 4.252210643 0.145139338 EELMSS(ph)DLEETAGSTSIPK ddPTM_HeLa_A486_30min_R1 9 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.206)S(0.794)DLEETAGSTSIPK;EELMS(0.034)S(0.966)DLEETAGSTSIPK;EELMS(0.114)S(0.886)DLEETAGSTSIPK;EELMS(0.005)S(0.995)DLEETAGSTSIPK;EELMS(0.348)S(0.652)DLEETAGSTSIPK;EELMS(0.064)S(0.936)DLEETAGSTSIPK;EELMS(0.02)S(0.98)DLEETAGSTSIPK;EELMS(0.183)S(0.817)DLEETAGSTSIPK;EELMS(0.069)S(0.931)DLEETAGSTSIPK ;;;;;;;; 406.55 2.34E-162 8763950000 4185020 4343270 2265580 1504889 3646540 4339380 5012200 4349380 3848960 5801220 TRUE FALSE FALSE 3891671.709 3999093.467 3142873.25 3503457.645 3189156.951 3804031.415 3758094.546 3359121.12 4182590.952 4348556.752 0.894934097 0.91963695 0.722739389 0.805659865 0.733382851 0.874780216 0.864216511 0.772468042 0.96183428 1 22.05210523 -7.872885265 5.324336705 0.996991776 0.823086535 0.500025877 0.06332963 0.171585991 6.802861614 0.063238049 0.016512393 1.34E-08 7.872885265 -0.17390524 EELMSS(ph)DLEETAGSTSIPKR ddPTM_HeLa_A485_30min_R1 5 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.204)S(0.796)DLEETAGSTSIPKR;EELMS(0.209)S(0.791)DLEETAGSTSIPKR;EELMS(0.159)S(0.841)DLEETAGSTSIPKR;EELMS(0.164)S(0.836)DLEETAGSTSIPKR;EELMS(0.018)S(0.982)DLEETAGSTSIPKR ;;;; 204.65 1.28E-26 3232080000 1464852 1769610 1035179 1208750 1662740 1903860 2292030 2783510 1271498 1887670 TRUE FALSE FALSE 1790703.274 1976550.496 1418134.789 1274780.952 1497191.767 2003543.166 1802319.066 2100849.808 1526675.986 1417108.609 1.263631639 1.394777001 1.000724137 0.89956475 1.056511659 1.413824708 1.271828465 1.482490329 1.077317558 1 20.4345189 -6.245063157 24.87375184 1.280668883 1.118927412 0.092075622 0.184847871 1593.992959 2421107.491 0.06374226 0.063563267 5.69E-07 6.245063157 -0.161741471 EELMSS(ph)DLEETAGSTSIPKR ddPTM_HeLa_A486_30min_R1 4 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.032)S(0.968)DLEETAGSTSIPKR;EELMS(0.003)S(0.997)DLEETAGSTSIPKR;EELMS(0.034)S(0.966)DLEETAGSTSIPKR;EELMS(0.431)S(0.569)DLEETAGSTSIPKR ;;; 221.43 1.33E-35 3565560000 1616150 1213780 742575 507379 1269950 1081980 1602360 1439420 919657 1886010 TRUE FALSE FALSE 1502866.231 1117595.652 1030119.927 1181203.954 1110661.029 948496.3084 1201432.58 1111695.488 999373.6092 1413740.82 1.063042256 0.79052372 0.728648358 0.835516621 0.785618561 0.670912444 0.849825203 0.786350279 0.706900158 1 20.43108623 -4.26208736 6.845326827 0.784698467 1.067503947 0.458544068 0.086790338 0.088870497 29.94256171 0.019940429 0.117210753 5.47E-05 4.26208736 0.28280548 EELNGAMEHTNSNES(ph)DS(ph)SPGRS(ph)PMQAVHPVHVK ddPTM_HeLa_A485_30min_R1 1 EELNGAMEHTNSNESDSSPGRSPMQAVHPVHVK 33 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66;A0A3B3IS87 Q9H334-8 FOXP1 Forkhead box protein P1 3 0 EELNGAMEHT(0.008)NS(0.157)NES(0.829)DS(0.527)S(0.527)PGRS(0.953)PMQAVHPVHVK 69.813 0.0005052 357630000 36087 39246 33535 51888 49149 49693 65600 68500 32228 68030 TRUE FALSE FALSE 44114.42865 43835.47831 45940.99201 54722.51005 44255.55299 52294.84864 51584.0241 51700.2676 38695.86399 51071.373 0.863779962 0.858317992 0.899544878 1.071490873 0.866543239 1.023956192 1.010037935 1.012314033 0.757682077 1 15.64022722 -5.012568581 23.00580977 0.965767705 0.865519503 0.194424776 0.085476057 315.5233979 577551.2884 0.022228968 0.041225139 9.71E-06 5.012568581 -0.100248202 EELNGAMEHTNSNESDSS(ph)PGRS(ph)PMQAVHPVHVK ddPTM_HeLa_A485_30min_R1 1 EELNGAMEHTNSNESDSSPGRSPMQAVHPVHVK 33 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66;A0A3B3IS87 Q9H334-8 FOXP1 Forkhead box protein P1 2 0 EELNGAMEHTNSNES(0.011)DS(0.467)S(0.526)PGRS(0.995)PMQAVHPVHVK 136.67 4.68E-07 328990000 31185 34248 33258 39103 45033 48520 58640 52530 39594 53797 TRUE FALSE FALSE 38121.99566 38253.00568 45561.51818 41239.09788 40549.3564 51060.43217 46111.08496 39646.93514 47540.15262 40386.39796 0.943931561 0.947175475 1.128140178 1.021113542 1.004034983 1.264297753 1.141747897 0.9816903 1.177132773 1 15.30158186 -4.751978743 24.48233867 1.091691312 0.945553388 0.30970536 0.08608429 183.8425006 475736.2834 0.022240274 0.057128047 1.77E-05 4.751978743 -0.146137924 EELQANGSAPAADKEEPAAAGS(ph)GAASPSAAEK ddPTM_HeLa_A485_30min_R1 1 EELQANGSAPAADKEEPAAAGSGAASPSAAEK 32 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EELQANGSAPAADKEEPAAAGS(0.999)GAAS(0.001)PSAAEK 206.62 1.41E-29 750720000 609610 532820 351460 684980 526980 524050 699380 648360 431390 913980 TRUE FALSE FALSE 745215.6414 595128.6641 481479.6795 722398.7229 474512.0209 551488.4477 549951.7496 489348.6934 517966.0161 686141.6066 1.086095981 0.867355453 0.70172057 1.052842031 0.69156573 0.803753106 0.801513484 0.713189069 0.754896673 1 19.38814683 -4.302852747 3.560003653 0.806767236 1.107419369 0.325401873 0.115850748 0.270663622 6.0774245 0.027945383 0.202371877 4.98E-05 4.302852747 0.300652133 EELQANGSAPAADKEEPAAAGS(ph)GAASPSAAEK ddPTM_HeLa_A486_30min_R1 1 EELQANGSAPAADKEEPAAAGSGAASPSAAEK 32 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EELQANGSAPAADKEEPAAAGS(0.566)GAAS(0.413)PS(0.021)AAEK 101.24 7.48E-05 2078700000 715830 690580 291350 365820 359130 902340 865060 812290 582800 1327600 TRUE FALSE FALSE 665654.0135 635855.9258 404168.5226 851647.4475 314084.5666 791018.4651 648612.8383 627349.2992 633317.5732 995160.3188 0.668891234 0.638948232 0.406134082 0.855789194 0.315612028 0.79486536 0.651767184 0.630400235 0.636397534 1 19.92456943 -14 0.282733902 3.839844335 0.596494459 0.364931245 0.150613449 241.2652088 2.30570057 402.2279225 0.159136715 1.00E-14 14 -3.243349875 EELQANGSAPAADKEEPAAAGSGAAS(ph)PSAAEK ddPTM_HeLa_A485_30min_R1 2 EELQANGSAPAADKEEPAAAGSGAASPSAAEK 32 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EELQANGSAPAADKEEPAAAGS(0.178)GAAS(0.822)PSAAEK;EELQANGSAPAADKEEPAAAGS(0.022)GAAS(0.977)PS(0.001)AAEK ; 441.35 8.34E-262 3301700000 2613400 1509780 960700 3364700 1527310 1957540 2896400 2206520 1443750 4400800 TRUE FALSE FALSE 3194741.814 1686335.638 1316102.908 3548505.041 1375245.654 2060033.767 2277560.479 1665367.51 1733497.382 3303761.551 0.96700133 0.51042898 0.398364981 1.074080253 0.41626662 0.623541904 0.689384038 0.504082236 0.524704146 1 21.65567813 -10.13401435 5.083887627 1.000014736 0.627638602 0.208691171 0.213342629 3.42E-05 5.82E-06 0.198092152 0.048042504 7.34E-11 10.13401435 -0.372376134 EELQANGSAPAADKEEPAAAGSGAAS(ph)PSAAEK ddPTM_HeLa_A486_30min_R1 4 EELQANGSAPAADKEEPAAAGSGAASPSAAEK 32 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EELQANGSAPAADKEEPAAAGS(0.208)GAAS(0.74)PS(0.051)AAEK;EELQANGSAPAADKEEPAAAGS(0.076)GAAS(0.924)PSAAEK;EELQANGSAPAADKEEPAAAGS(0.046)GAAS(0.895)PS(0.059)AAEK;EELQANGSAPAADKEEPAAAGSGAAS(0.998)PS(0.002)AAEK ;;; 376.05 3.09E-170 3700790000 1654590 1556070 531497 756048 913273 1971340 2142370 1763030 1246027 2906740 TRUE FALSE FALSE 1538611.785 1432761.346 737306.8724 1760117.953 798721.7844 1728136.114 1606326.366 1361626.556 1354033.624 2178873.384 0.706150158 0.657569805 0.33838904 0.80781103 0.366575585 0.793132876 0.737227954 0.624922295 0.621437498 1 21.05515093 EELRHT(ph)PELPLAPRPLK ddPTM_HeLa_A485_30min_R1 6 EELRHTPELPLAPRPLK 17 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK ;;;;; 146.13 6.81E-08 2754940000 3290790 2704650 2438930 3447540 3494300 2627830 3081780 2625100 2557370 4088090 TRUE FALSE FALSE 4022814.882 3020935.29 3341191.699 3635870.381 3146395.223 2765419.115 2423332.527 1981290.109 3070610.701 3069004.399 1.310788243 0.98433723 1.08868912 1.1847068 1.025216915 0.901080206 0.789615202 0.645580733 1.000523395 1 21.54933928 -6.205685154 2.350546325 0.831832139 1.126279082 0.513871429 0.124456994 0.235169007 2.552595784 0.046004074 0.044081814 6.23E-07 6.205685154 0.294446943 EELRHT(ph)PELPLAPRPLK ddPTM_HeLa_A486_30min_R1 4 EELRHTPELPLAPRPLK 17 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK;EELRHT(1)PELPLAPRPLK ;;; 131.18 1.18E-05 2872780000 3055170 3335420 2070550 1160523 3119730 3142780 3298410 3194550 2448240 3215650 TRUE FALSE FALSE 2841018.36 3071109.172 2872322.411 2701756.194 2728424.373 2755055.757 2473112.931 2467220.702 2660455.414 2410430.31 1.178635345 1.274091667 1.191622259 1.12086053 1.131924189 1.142972583 1.026004743 1.023560271 1.103726336 1 21.20085929 -5.869815112 0.519285675 1.022932822 1.251484674 0.733735365 0.041850462 0.594892995 0.326883039 0.035053225 0.066771877 1.35E-06 5.869815112 0.228551852 EELSGS(ph)LLQSVQEALEER ddPTM_HeLa_A485_30min_R1 1 EELSGSLLQSVQEALEER 18 0 Q12851;Q12851-2 Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 1 0 EELS(0.007)GS(0.992)LLQSVQEALEER 86.488 0.00091841 7585200 2542.4 2679.7 3660.9 3122.4 3812.3 2554.7 3879.6 3762.8 2246.6 4786.8 TRUE FALSE FALSE 3107.948109 2993.067605 5015.219253 3292.968806 3432.734026 2688.460142 3050.691767 2839.9674 2697.472013 3593.538855 0.864871158 0.83290253 1.395621268 0.916358203 0.95525168 0.748137213 0.848938022 0.790298231 0.750645011 1 11.81118957 -5.970078016 2.541886161 0.817001205 1.019793388 0.20821719 0.160080529 0.426340675 5.576847002 0.056385581 0.062628481 1.07E-06 5.970078016 0.202792183 EELSHS(ph)PEPCTK ddPTM_HeLa_A485_30min_R1 5 EELSHSPEPCTK 12 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 EELS(0.001)HS(0.999)PEPCTK;EELSHS(1)PEPCTK;EELS(0.001)HS(0.998)PEPCT(0.001)K;EELS(0.175)HS(0.825)PEPCT(0.001)K;EELS(0.23)HS(0.767)PEPCT(0.003)K ;;;; 115.1 0.00020456 5048230000 2265120 2301370 2011100 2750030 3073800 2342910 3460970 3346010 2242620 3850470 TRUE FALSE FALSE 2768988.129 2570495.202 2755089.579 2900257.175 2767761.679 2465581.145 2721505.486 2525395.801 2692693.263 2890618.692 0.957922308 0.889254335 0.953114151 1.003334402 0.957498022 0.852959663 0.941495844 0.873652346 0.931528351 1 21.46294688 EELSHS(ph)PEPCTK ddPTM_HeLa_A486_30min_R1 6 EELSHSPEPCTK 12 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 EELS(0.011)HS(0.989)PEPCTK;EELS(0.001)HS(0.99)PEPCT(0.01)K;EELS(0.042)HS(0.958)PEPCTK;EELS(0.008)HS(0.992)PEPCTK;EELS(0.009)HS(0.989)PEPCT(0.002)K;EELS(0.004)HS(0.996)PEPCTK ;;;;; 138.89 6.85E-06 6397010000 2851260 3076340 1823700 1243250 2965490 3025800 3693710 3767400 2439870 3853380 TRUE FALSE FALSE 2651401.398 2832559.615 2529885.48 2894348.83 2593530.592 2652507.56 2769504.69 2909645.262 2651359.896 2888468.567 0.917926346 0.980644085 0.875857023 1.002035772 0.897891229 0.918309304 0.958814204 1.007331461 0.917911978 1 21.46187336 -8.038571373 0.476831149 0.999415348 0.932953206 0.159856356 0.041735054 2.110596789 1.187884973 0.051086579 0.02464593 9.15E-09 8.038571373 -0.066462142 EELVS(ph)SDELR ddPTM_HeLa_A486_30min_R1 1 EELVSSDELR 10 0 Q8N573-3;Q8N573-2;Q8N573-5;Q8N573-8;Q8N573;H0YC07 Q8N573-3 OXR1 Oxidation resistance protein 1 1 0 EELVS(0.5)S(0.5)DELR 139.86 1.71E-05 217960000 523160 567450 365340 246500 442410 491510 472850 492800 451630 653430 TRUE FALSE FALSE 486489.1856 522483.1954 506809.4321 573864.4574 386918.8125 430872.4935 354537.9287 380600.1977 490777.652 489806.8749 0.993226536 1.066712662 1.034712778 1.171613725 0.789941572 0.87967833 0.723832079 0.777041355 1.001981959 1 18.9018535 -5.769892964 24.99998149 0.844898865 1.064301617 0.523620116 0.094695368 136.2858835 403040.469 0.028751275 0.033125091 1.70E-06 5.769892964 0.219402752 EELVSQGIMPPLKS(ph)PAAFHEQR ddPTM_HeLa_A485_30min_R1 1 EELVSQGIMPPLKSPAAFHEQR 22 1 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;B0QY74;A0A669KBG1 A0A494BZX7 mkl1;MKL1 Phosphatase and actin regulator 1 0 EELVSQGIMPPLKS(1)PAAFHEQR 94.767 0.00068772 107320000 174640 160160 109910 186520 183150 144050 183430 133680 123580 214510 TRUE FALSE FALSE 213488.0655 178889.3188 150570.2827 196709.1153 164914.9429 151592.2353 144238.682 100894.7704 148381.3725 161036.6048 1.325711417 1.110861217 0.935006565 1.221518024 1.024083581 0.941352654 0.895688792 0.626533145 0.92141394 1 17.29702913 -6.330184409 1.573224095 0.827985069 1.132613281 0.486558215 0.130605719 0.323827279 1.596525116 0.059075618 0.050880691 4.68E-07 6.330184409 0.304628212 EELVSQGIMPPLKS(ph)PAAFHEQR ddPTM_HeLa_A486_30min_R1 1 EELVSQGIMPPLKSPAAFHEQR 22 1 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;B0QY74;A0A669KBG1 A0A494BZX7 mkl1;MKL1 Phosphatase and actin regulator 1 0 EELVSQGIMPPLKS(1)PAAFHEQR 89.039 0.0010241 95210000 105590 110480 68853 43638 96424 108510 125060 125540 82905 123130 TRUE FALSE FALSE 98188.68627 101725.1624 95514.72555 101591.4693 84329.6028 95123.13945 93768.66525 96957.28252 90091.27215 92297.44656 1.063828848 1.102144926 1.034857725 1.100696424 0.913672111 1.030615071 1.015939972 1.05048716 0.976097124 1 16.49400312 -5.713757495 24.9999998 1.002873144 1.074399072 0.48738413 0.038763618 109.8349069 57586.75052 0.01120215 0.014461884 1.93E-06 5.713757495 0.071525927 EEMEMDPKPDLDSDSWCLLGTDSCRPS(ph)L ddPTM_HeLa_A486_30min_R1 1 EEMEMDPKPDLDSDSWCLLGTDSCRPSL 28 2 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 EEMEMDPKPDLDSDS(0.002)WCLLGT(0.114)DS(0.186)CRPS(0.697)L 68.741 0.0057043 63430000 35223 50851 27864 28039 52779 55503 71137 70977 36012 53008 TRUE FALSE FALSE 32754.04959 46821.38156 38653.68702 65276.20901 46158.96568 48655.60417 53337.77019 54817.08652 39133.54916 39734.45178 0.824323682 1.178357306 0.97280031 1.642811366 1.161686235 1.224519328 1.342355759 1.379585827 0.984877038 1 15.27810282 -4.011209488 1.251515642 1.251339991 0.434175403 0.253114862 0.19742054 3.164436037 2.857525785 0.056157859 3.855031719 9.75E-05 4.011209488 -0.817164588 EEMGHLMQAEDTSHHTAPMSVPEPHAATASPPT(ph)DGTTR ddPTM_HeLa_A485_30min_R1 1 EEMGHLMQAEDTSHHTAPMSVPEPHAATASPPTDGTTR 38 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 EEMGHLMQAEDTSHHTAPMSVPEPHAAT(0.31)AS(0.2)PPT(0.379)DGT(0.056)T(0.056)R 108.5 1.49E-05 279900000 50049 78536 75730 38915 68795 63170 62966 71858 64672 71706 TRUE FALSE FALSE 61182.22738 87720.10203 103745.6784 41040.82791 61945.52825 66477.48352 49512.79972 54234.71283 77651.07719 53831.01385 1.136560934 1.629545791 1.927247342 0.762401169 1.150740508 1.234929063 0.91978204 1.007499375 1.442497022 1 15.71614998 -5.264328468 24.99994002 1.077770777 1.570960793 0.449855286 0.248501323 229.095986 1982425.259 0.069267873 0.108054341 5.44E-06 5.264328468 0.493190016 EENPES(ph)DGEPVVEDGTSVK ddPTM_HeLa_A485_30min_R1 2 EENPESDGEPVVEDGTSVK 19 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;A0A087WTW2;H0Y6I0 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 EENPES(1)DGEPVVEDGTSVK;EENPES(1)DGEPVVEDGTSVK ; 294.88 5.57E-79 681110000 525090 440570 304480 700100 513520 573770 738280 702070 433560 848450 TRUE FALSE FALSE 641894.459 492090.8291 417119.8225 738344.6903 462392.1457 603811.71 580540.4468 529886.2317 520571.5152 636947.0296 1.007767411 0.77257732 0.654873644 1.159193239 0.725950706 0.947977904 0.91144227 0.831915696 0.817291691 1 19.28081387 -10.61764244 3.50455895 1.0060619 0.867379424 0.073546208 0.138281027 18438505.03 55955143.4 603332.2586 0.031989829 2.41E-11 10.61764244 -0.138682475 EENPES(ph)DGEPVVEDGTSVK ddPTM_HeLa_A486_30min_R1 2 EENPESDGEPVVEDGTSVK 19 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;A0A087WTW2;H0Y6I0 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 EENPES(1)DGEPVVEDGTSVK;EENPES(1)DGEPVVEDGTSVK ; 348.33 8.52E-125 368500000 688520 674730 318010 260600 546260 786190 795140 766910 565880 969300 TRUE FALSE FALSE 640258.3035 621261.9375 441151.9886 606689.97 477742.9771 689197.8712 596187.5619 592301.3345 614930.934 726580.9709 0.881193328 0.855048456 0.607161495 0.834992925 0.657522005 0.9485493 0.820538365 0.815189715 0.846335039 1 19.47076406 -6.272299221 24.99730474 0.870472828 0.76694208 0.270755241 0.095893237 1169.530342 2692030.87 0.033424206 0.029763333 5.34E-07 6.272299221 -0.103530748 EENS(ph)HT(ph)EQPPLMK ddPTM_HeLa_A485_30min_R1 1 EENSHTEQPPLMK 13 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 2 0 EENS(1)HT(1)EQPPLMK 78.964 0.012461 312450000 60606 201110 339090 33405 139690 133400 87868 107300 180490 40071 TRUE FALSE FALSE 74087.59561 224628.0651 464533.5017 35229.83056 125781.9731 140384.6177 69094.28398 80984.50676 216712.6874 30082.03715 2.462851676 7.467182623 15.44222219 1.17112516 4.181298377 4.666725761 2.296861866 2.692121759 7.20405624 1 14.87661465 -5.338543688 24.99999996 3.4363982 8.359336228 0.325199757 3.389927866 139.8879 45355.75563 0.956001397 1.417979366 4.59E-06 5.338543688 4.922938029 EENS(ph)HT(ph)EQPPLMK ddPTM_HeLa_A486_30min_R1 1 EENSHTEQPPLMK 13 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 2 0 EENS(1)HT(1)EQPPLMK 85.271 0.0048896 163000000 66001 140190 311880 18307 216350 51743 54851 87056 121160 59201 TRUE FALSE FALSE 61374.67073 129080.8338 432648.2884 42619.62118 189213.3656 45359.47474 41126.69965 67235.24922 131662.2464 44376.68427 1.383038678 2.908753459 9.749450541 0.960405715 4.263801335 1.02214655 0.92676369 1.51510304 2.966923927 1 15.43751426 -5.966308252 1.733066258 1.525300369 4.260326799 0.18599488 2.33987061 0.600807503 3.67337171 0.900184706 1.01994971 1.08E-06 5.966308252 2.735026431 EENTSNESTDVTK(ac)GDSK(ac)NAK ddPTM_HeLa_A485_30min_R1 1 EENTSNESTDVTKGDSKNAK 20 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 2 EENTSNESTDVTK(1)GDSK(1)NAK 216.65 1.39E-29 16888000 1000.2 1144.9 1110.7 2576.5 2938.7 5043.8 16554 25695 20283 39501 FALSE TRUE FALSE 1222.691039 1278.786096 1521.59415 2717.247671 2646.11271 5307.885569 13017.10267 19393.26096 24353.61205 29654.12766 0.041231732 0.043123376 0.051311378 0.091631347 0.089232526 0.178993145 0.438964276 0.65398184 0.821255386 1 14.85594531 -7.228487046 0.909586125 0.989217094 0.041876776 0.996686641 0.019830094 0.029871458 0.044601688 0.01829243 0.007796705 5.91E-08 7.228487046 -0.947340317 down EENTSNESTDVTK(ac)GDSK(ac)NAK(ac)K ddPTM_HeLa_A486_30min_R1 1 EENTSNESTDVTKGDSKNAKK 21 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 EENTSNESTDVTK(1)GDSK(1)NAK(1)K 189.11 2.87E-28 33847000 2234.2 4767 4168.7 1681.7 6652.9 7314 6740.6 6533.3 6153.9 7158.5 FALSE TRUE FALSE 2077.594117 4389.245559 5782.932282 3915.082588 5818.431246 6411.673043 5054.030585 5045.810211 6687.325007 5365.965006 0.38717996 0.817978789 1.077705925 0.729613888 1.084321504 1.194877908 0.941867973 0.940336026 1.246248345 1 12.38962193 -4.142599721 1.505413038 1.026832253 4.64E-14 0.666630399 0.137468622 0.921782718 1.566229669 0.03907077 1.527291833 7.20E-05 4.142599721 -1.026832253 EENTSNESTDVTKGDSK(ac)NAK ddPTM_HeLa_A486_30min_R1 1 EENTSNESTDVTKGDSKNAK 20 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 EENTSNESTDVTKGDSK(1)NAK 316.6 1.05E-86 99005000 149240 144450 65243 71253 142570 170790 218330 203320 109150 236970 FALSE TRUE FALSE 138779.0467 133003.2559 90506.83687 165880.5849 124687.5412 149719.6663 163701.5247 157028.4744 118611.2099 177631.1696 0.781276434 0.748760796 0.509521145 0.933848408 0.701946294 0.842868212 0.921581078 0.88401419 0.66773872 1 17.43852523 -5.282931086 24.97400286 0.841933349 0.686743541 0.307926954 0.116481518 1009.593921 1173176.159 0.032246934 0.047882644 5.21E-06 5.282931086 -0.155189808 EENTSNESTDVTKGDSK(ac)NAK(ac)K ddPTM_HeLa_A485_30min_R1 1 EENTSNESTDVTKGDSKNAKK 21 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 2 EENTSNESTDVTKGDSK(1)NAK(1)K 166.06 3.44E-17 20191000 0 421.31 0 734.82 801.34 3501.7 9656.4 14482 8468.7 19340 FALSE TRUE FALSE 0 470.5785396 0 774.9613559 721.5557759 3685.043597 7593.231254 10930.26679 10168.29041 14518.89393 0 0.032411459 0 0.05337606 0.04969771 0.253810216 0.52298965 0.752830543 0.700348832 1 13.82564393 -6.948979987 0.913567985 0.916682242 5.41E-27 0.975250879 0.056039732 0.080618289 0.126212366 0.04545506 0.022753671 1.12E-07 6.948979987 -0.916682242 down EEPCLLKR ddPTM_HeLa_A485_30min_R1 1 EEPCLLKR 8 1 Q60FE5;P21333-2;P21333;H0Y5F3;H7C2E7 Q60FE5 FLNA Filamin-A 0 0 74.301 0.032808 54277000 82865 157100 185740 39606 193580 149890 126950 168420 132510 60033 FALSE FALSE TRUE 101298.0334 175471.4784 254452.9553 41769.57549 174306.4955 157738.0086 99826.09541 127114.7309 159103.5415 45067.87793 2.247677016 3.893493248 5.64599371 0.926814783 3.86764373 3.500009672 2.215016549 2.820517335 3.530309144 1 15.4598119 -9.941452824 0.300731817 4.44E-11 3.474388789 0.226091016 1.199254536 21.27671609 1.66706096 21.91466537 1.352483493 1.14E-10 9.941452824 3.474388789 EEPDS(ph)ENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_A485_30min_R1 1 EEPDSENIPQELLSNLGHPESPPR 24 0 A0A0A0MTL5;Q13309-2;Q13309;D6RF40;D6RAG5;D6R9R7 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 2 0 EEPDS(0.999)ENIPQELLS(0.009)NLGHPES(0.992)PPR 56.164 0.027853 9868300 834.82 1355.7 0 913.75 0 0 0 0 0 0 TRUE FALSE FALSE 1020.522829 1514.237322 0 963.6658488 0 0 0 0 0 0 0 EEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_A485_30min_R1 6 EEPDSENIPQELLSNLGHPESPPR 24 0 A0A0A0MTL5;Q13309-2;Q13309;D6RF40;D6RAG5;D6R9R7 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 1 0 EEPDSENIPQELLS(0.001)NLGHPES(0.999)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLS(0.06)NLGHPES(0.94)PPR ;;;;; 260.77 1.64E-61 12548030000 947104 1213224 999119 817428 1130587 1151227 1266293 1404049 938604 1115705 TRUE FALSE FALSE 1157784.017 1355099.993 1368734.695 862082.0218 1018021.789 1211503.466 995739.1559 1059703.781 1126973.213 837580.2765 1.382296181 1.617874765 1.634153446 1.029253011 1.215431902 1.446432658 1.188828323 1.265196675 1.345510687 1 19.67586794 -1 0.09350818 0.867031853 2.718568701 0.355023914 0.165652441 173.1272722 1.160758559 2.862510786 41.09536888 0.1 1 1.851536848 EEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_A486_30min_R1 6 EEPDSENIPQELLSNLGHPESPPR 24 0 A0A0A0MTL5;Q13309-2;Q13309;D6RF40;D6RAG5;D6R9R7 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 1 0 EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLSNLGHPES(1)PPR ;;;;; 188.26 8.66E-21 10575930000 712637 812196 545682 130951 624866 642008 688547 638704 630004 679002 TRUE FALSE FALSE 662684.8264 747834.631 756984.6843 304860.5459 546489.4796 562803.5804 516265.2579 493285.042 684613.254 508975.4796 1.301997548 1.469294025 1.48727142 0.598969023 1.073704926 1.105757749 1.014322455 0.969172508 1.345081013 1 18.95723663 -5.212624459 24.99998365 1.020165451 1.424498566 0.519502321 0.178090974 306.2789006 156856.6261 0.047644205 0.082522023 6.13E-06 5.212624459 0.404333115 EEPLDPEEAEGPLS(ph)LVTTANHSPDFDHDRDYEDEPVNEDME ddPTM_HeLa_A486_30min_R1 2 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLS(0.249)LVT(0.249)T(0.249)ANHS(0.249)PDFDHDRDY(0.005)EDEPVNEDME;EEPLDPEEAEGPLS(0.24)LVT(0.24)T(0.24)ANHS(0.24)PDFDHDRDY(0.041)EDEPVNEDME ; 82.965 0.00020022 536702000 28200 30220 23431.7 12981.4 31218.6 27206 30926 34274 24433 33779 TRUE FALSE FALSE 26223.32562 27825.25714 32505.08176 30221.35524 27302.87209 23849.60033 23187.9877 26470.5584 26550.87211 25320.51854 1.035655158 1.0989213 1.283744712 1.193551988 1.078290401 0.941908054 0.915778548 1.045419286 1.048591168 1 14.62801933 -6.010938533 4.463858988 0.989417245 1.157384849 0.539680764 0.07078638 0.168804957 8.453989844 0.025571289 0.027337316 9.75E-07 6.010938533 0.167967605 EEPLDPEEAEGPLSLVT(ph)TANHSPDFDHDR ddPTM_HeLa_A486_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDR 29 0 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLS(0.006)LVT(0.394)T(0.394)ANHS(0.205)PDFDHDR 127.4 9.31E-06 60242000 58410 57629 30552 10987 34729 43089 45660 38024 43392 57405 TRUE FALSE FALSE 54315.76063 53062.26816 42382.55261 25578.29125 30372.96498 37773.11728 34235.38506 29366.76526 47153.2535 43030.41436 1.262264411 1.233134027 0.984944097 0.594423541 0.705848769 0.877823694 0.795609003 0.682465314 1.095812211 1 15.39306911 -4.900582433 3.495903782 0.803628729 1.250709135 0.583646889 0.14168534 0.147667099 3.499541989 0.037544547 0.088190241 1.26E-05 4.900582433 0.447080406 EEPLDPEEAEGPLSLVT(ph)TANHSPDFDHDRDYEDEPVNEDME ddPTM_HeLa_A485_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLS(0.001)LVT(0.333)T(0.333)ANHS(0.333)PDFDHDRDYEDEPVNEDME 168.59 1.09E-15 1053100000 108200 152290 154410 109530 168430 138430 158050 161360 117690 138730 TRUE FALSE FALSE 132268.7167 170098.9908 211532.6845 115513.3466 151660.5178 145677.9807 124281.3264 121786.207 141309.3035 104147.1641 1.270017459 1.633256096 2.031094042 1.109135784 1.45621361 1.398770499 1.193324152 1.169366521 1.356823344 1 16.66826403 -6.168280311 0.759146857 1.166186686 1.598285641 0.306493759 0.235620363 0.862366357 1.097429206 0.162457444 0.175308757 6.79E-07 6.168280311 0.432098955 EEPLDPEEAEGPLSLVT(ph)TANHSPDFDHDRDYEDEPVNEDME ddPTM_HeLa_A486_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLSLVT(0.333)T(0.333)ANHS(0.333)PDFDHDRDYEDEPVNEDME 117.6 8.43E-07 762540000 334540 359820 310050 115220 401130 352980 377750 354550 394420 306990 TRUE FALSE FALSE 311090.4736 331306.5528 430109.6634 268237.9829 350816.535 309432.9164 283232.9546 273826.7048 428608.6432 230117.7058 1.351875435 1.439726472 1.869085483 1.165655558 1.524509093 1.344672351 1.23081774 1.18994192 1.862562646 1 17.81201247 -5.295272294 24.99048795 1.343517494 1.542179375 0.137632386 0.253312639 1320.715725 975536.5092 0.069234885 0.102698926 5.07E-06 5.295272294 0.198661881 EEPLDPEEAEGPLSLVTT(ph)ANHSPDFDHDR ddPTM_HeLa_A485_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDR 29 0 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLSLVT(0.124)T(0.514)ANHS(0.361)PDFDHDR 141.13 2.01E-07 84119000 50287 71782 45568 44278 38653 47164 44940 38999 36992 46235 TRUE FALSE FALSE 61473.16966 80176.28048 62425.49944 46696.79502 34804.5716 49633.43411 35338.20187 29434.4341 44415.95509 34709.46539 1.771077974 2.309925537 1.798515152 1.345361978 1.002740066 1.429968268 1.018114266 0.848023263 1.279649646 1 15.08304152 -5.27247933 2.369054185 1.102985717 2.04593824 0.792744175 0.19882179 0.123351772 1.357583773 0.058091626 0.107279176 5.34E-06 5.27247933 0.942952522 EEPLDPEEAEGPLSLVTT(ph)ANHSPDFDHDR ddPTM_HeLa_A486_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDR 29 0 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLS(0.031)LVT(0.12)T(0.424)ANHS(0.424)PDFDHDR 89.391 0.003268 76529000 48617 49543 26033 10775 29281 35828 35121 32092 36684 47423 TRUE FALSE FALSE 45209.19936 45617.03225 36113.67479 25084.74454 25608.30395 31407.90563 26333.35433 24785.35216 39863.79866 35547.97213 1.271779982 1.283252729 1.015913781 0.705658946 0.720387195 0.88353579 0.740783588 0.697236739 1.121408516 1 15.11747964 -4.933476968 3.283665115 0.819490613 1.279181734 0.633301491 0.131973446 0.137637283 2.991869149 0.035137304 0.081653647 1.17E-05 4.933476968 0.459691121 EEPLDPEEAEGPLSLVTT(ph)ANHSPDFDHDRDYEDEPVNEDME ddPTM_HeLa_A485_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLSLVT(0.004)T(0.498)ANHS(0.498)PDFDHDRDYEDEPVNEDME 259.98 1.76E-65 309070000 44512 61438 54631 43799 72524 64439 79418 73829 62486 61040 TRUE FALSE FALSE 54413.54084 68622.63966 74841.28029 46191.62847 65303.25591 67812.9264 62449.69551 55722.32199 75026.36704 45823.85136 1.187450186 1.497531037 1.633238544 1.008025888 1.425093133 1.479860911 1.362820751 1.21601132 1.637277636 1 15.4838111 -10.27452406 4.944132539 0.999901275 1.381309112 0.269022127 0.189396987 0.000199774 2.93E-05 0.177748193 0.043099166 5.31E-11 10.27452406 0.381407837 EEPLDPEEAEGPLSLVTTANHS(ph)PDFDHDR ddPTM_HeLa_A485_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDR 29 0 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLS(0.001)LVT(0.055)T(0.306)ANHS(0.638)PDFDHDR 106.21 0.00018903 78922000 53844 77839 48389 38092 45221 53950 50578 44267 40837 47193 TRUE FALSE FALSE 65821.41204 86941.59394 66290.10473 40172.86951 40718.63846 56774.73858 39771.59712 33410.44884 49032.61132 35428.65362 1.857858126 2.45399091 1.871087325 1.133909009 1.149313742 1.602509065 1.122582798 0.943034675 1.383981786 1 15.11262902 -5.134902272 3.74851811 1.201031423 2.15882468 0.763805545 0.224628349 0.106316012 2.643654919 0.061489726 0.11438378 7.33E-06 5.134902272 0.957793257 EEPLDPEEAEGPLSLVTTANHS(ph)PDFDHDRDYEDEPVNEDME ddPTM_HeLa_A485_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLSLVT(0.003)T(0.134)ANHS(0.863)PDFDHDRDYEDEPVNEDME 207 8.48E-31 50533000 34772 41889 41836 39693 49712 46908 53811 55522 44642 55652 TRUE FALSE FALSE 42506.91144 46787.55416 57312.87734 41861.32808 44762.49873 49364.03035 42313.84025 41905.14244 53601.23992 41778.9806 1.017423375 1.119882618 1.371811292 1.001971027 1.071411942 1.181551815 1.012802123 1.003019744 1.282971464 1 15.35048967 EEPLDPEEAEGPLSLVTTANHS(ph)PDFDHDRDYEDEPVNEDME ddPTM_HeLa_A486_30min_R1 4 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 EEPLDPEEAEGPLSLVT(0.002)T(0.039)ANHS(0.959)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLS(0.001)LVT(0.138)T(0.138)ANHS(0.724)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLSLVT(0.014)T(0.056)ANHS(0.93)PDFDHDRDYEDEPVNEDME;EEPLDPEEAEGPLSLVT(0.132)T(0.132)ANHS(0.736)PDFDHDRDYEDEPVNEDME ;;; 259.5 9.76E-66 1298390000 572336 616295 542834 253920.6 746205 607424 736250 719832 583231 685044 TRUE FALSE FALSE 532218.2019 567457.5397 753033.8624 591139.9892 652609.0108 532486.2027 552032.4627 555941.9674 633785.9327 513504.5235 1.036443064 1.105068239 1.466460037 1.151187501 1.270892428 1.03696497 1.075029406 1.082642785 1.234236319 1 18.97001746 -6.263087884 24.99837263 1.090268289 1.211826088 0.19705337 0.12089977 266.3060994 4038319.653 0.042522818 0.03949998 5.46E-07 6.263087884 0.121557799 EEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_A485_30min_R1 4 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 EEPLS(1)EEEPCTSTAIAS(1)PEKK;EEPLS(1)EEEPCT(0.001)S(0.003)T(0.002)AIAS(0.994)PEKK;EEPLS(1)EEEPCTSTAIAS(1)PEKK;EEPLS(1)EEEPCT(0.001)S(0.004)T(0.005)AIAS(0.99)PEKK ;;; 202.49 7.41E-27 4417980000 5593960 2571880 1561464 10394490 3708040 3489750 6991580 4759610 2799110 13314130 TRUE FALSE FALSE 6838317.103 2872638.994 2139114.512 10962314.67 3338854.518 3672467.914 5497771.817 3592308.185 3360865.702 9995162.419 0.68416268 0.287402933 0.214014983 1.096762034 0.33404705 0.367424536 0.55004327 0.359404683 0.336249233 1 23.25279858 -10.52179647 3.044849439 1.018623016 0.467577461 0.295353937 0.245590965 94773268.3 109853477.4 14630692.59 0.062331562 3.01E-11 10.52179647 -0.551045555 EEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_A486_30min_R1 4 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 EEPLS(1)EEEPCT(0.017)S(0.048)T(0.023)AIAS(0.912)PEKK;EEPLS(1)EEEPCTSTAIAS(1)PEKK;EEPLS(1)EEEPCTSTAIAS(1)PEKK;EEPLS(1)EEEPCTSTAIAS(1)PEKK ;;; 200.06 8.80E-27 5785250000 3825530 3637650 926270 2797780 2103810 4686590 6572100 4907790 2914170 8701600 TRUE FALSE FALSE 3557380.102 3349389.366 1284946.55 6513373.232 1839930.533 4108406.176 4927691.067 3790393.353 3166772.602 6522662.722 0.545387713 0.513500316 0.196997239 0.998575813 0.282082734 0.629866414 0.755472309 0.581111352 0.485503043 1 22.6370296 -14 0.198364541 2.964444526 0.48505051 0.285174061 0.212435573 181.3494423 1.791267498 141.389538 0.504862527 1.00E-14 14 -2.479394016 EEPLS(ph)EEEPCTSTAIASPEKK ddPTM_HeLa_A485_30min_R1 3 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(1)EEEPCTSTAIASPEKK ;; 196.02 1.47E-20 3599600000 1947190 1348140 805798 2671690 1427630 1705520 2567830 2303040 1342673 3362180 TRUE FALSE FALSE 2380335.698 1505793.246 1103896.212 2817637.66 1285490.144 1794818.39 2019192.143 1738215.829 1612135.155 2524050.402 0.943061872 0.596578121 0.437351097 1.116315925 0.509296543 0.711086589 0.799980912 0.688661299 0.638709573 1 21.26730929 -9.990570522 4.387117838 1.000010072 0.71124695 0.167627137 0.18984636 243198424.1 374257981.4 35742.75161 0.04534196 1.02E-10 9.990570522 -0.288763122 EEPLS(ph)EEEPCTSTAIASPEKK ddPTM_HeLa_A486_30min_R1 2 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLS(1)EEEPCTSTAIASPEKK;EEPLS(1)EEEPCTSTAIASPEKK ; 178.39 2.83E-16 2530760000 889520 830410 309610 341460 598180 885770 1057910 961120 602610 1290590 TRUE FALSE FALSE 827169.2415 764605.2873 429499.2836 794936.1364 523150.6866 776492.7032 793209.7286 742293.9571 654844.72 967417.8637 0.855027876 0.7903568 0.443964599 0.821709177 0.540770133 0.802644578 0.819924624 0.767294036 0.676899554 1 19.88377965 -6.407965936 19.20314326 0.799299079 0.687734426 0.159248078 0.139362273 8.207146614 1345.860622 0.048114501 0.042432786 3.91E-07 6.407965936 -0.111564653 EEPLSEEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_A485_30min_R1 1 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLSEEEPCT(0.014)S(0.014)T(0.014)AIAS(0.957)PEKK 63.122 0.008558 137210000 71608 56577 51814 115920 70546 73806 92326 90734 60212 154180 TRUE FALSE FALSE 87536.95256 63193.188 70982.15476 122252.4161 63522.19254 77670.36803 72599.79587 68481.34423 72295.9961 115745.7635 0.75628645 0.545965451 0.613259204 1.056215039 0.548807927 0.671042859 0.627235017 0.591653139 0.6246103 1 16.82059986 -10.09058757 4.978681106 1.000009809 0.669394259 0.328168841 0.141399028 1.64E+11 29899113944 19022966.97 0.034376754 8.12E-11 10.09058757 -0.330615551 EEPLSEEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_A486_30min_R1 1 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLSEEEPCTSTAIAS(1)PEKK 103.71 0.00010151 96523000 107070 113730 42153 82519 76246 123610 181040 147140 103490 212490 TRUE FALSE FALSE 99564.94591 104717.6206 58475.7705 192108.4023 66682.51571 108360.255 135741.8772 113639.434 112460.5965 159281.1209 0.625089435 0.657438998 0.367123047 1.206096499 0.4186467 0.680308214 0.852215733 0.713451998 0.706051011 1 17.28121575 -14 0.122195567 1.996426611 0.550087269 0.173550775 0.215547302 276.1217671 2.171422118 67.93442569 1.921700216 1.00E-14 14 -1.446339343 EEPS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 EEPSPVK 7 0 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EEPS(1)PVK 76.221 0.011819 0 1157300 951140 469710 1102200 423040 683650 836290 590450 540370 1135400 TRUE FALSE FALSE 1414737.392 1062367.549 643475.2753 1162410.395 380920.6522 719444.8569 657609.8096 445641.2117 648817.3024 852365.6755 1.659777526 1.246375329 0.754928658 1.363746134 0.44689816 0.84405658 0.77151137 0.522828669 0.761195953 1 19.70111297 -1.377400211 0.542738463 0.722993847 26.71679114 0.572089947 0.23730544 55.62034103 0.807739163 0.113911465 1628.293419 0.041937235 1.377400211 25.99379729 EEPS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 EEPSPVK 7 0 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EEPS(1)PVK;EEPS(1)PVK ; 103.7 0.0037134 782950000 2620900 2287000 756690 509700 906660 1873110 1780140 1302580 1628590 3497200 TRUE FALSE FALSE 2437188.444 2105769.791 1049700.633 1186607.359 792938.2485 1642024.733 1334730.144 1006010.969 1769757.492 2621478.357 0.929700006 0.803275673 0.400423154 0.452648162 0.302477511 0.626373561 0.509151693 0.383757114 0.675099029 1 21.3219492 -8.017622347 22.1821821 1.000000013 0.543019528 0.352709535 0.183596205 298.2877764 375472.4202 0.189437436 0.048912536 9.60E-09 8.017622347 -0.456980485 EEPS(ph)PVKAEVAEK ddPTM_HeLa_A485_30min_R1 7 EEPSPVKAEVAEK 13 1 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK ;;;;;; 183.31 5.10E-16 25480350000 24065240 15329450 7675120 32829710 14269270 17582760 27696480 22038400 12546250 38479210 TRUE FALSE FALSE 29418469.61 17122095.83 10514466.28 34623113.93 12848571.38 18503366.13 21778900.79 16633447.85 15064167.29 28887051.1 1.018396426 0.592725639 0.363985449 1.198568653 0.444786535 0.640541884 0.753932989 0.575809825 0.521485119 1 24.7839196 -10.12577965 4.746641625 1.00002092 0.673560251 0.135668954 0.242793327 315905652.8 6.883715054 79863.78325 0.056376042 7.49E-11 10.12577965 -0.326460669 EEPS(ph)PVKAEVAEK ddPTM_HeLa_A486_30min_R1 7 EEPSPVKAEVAEK 13 1 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK;EEPS(1)PVKAEVAEK ;;;;;; 198.61 2.87E-20 14765670000 16197110 13076500 4203319 6756939 7027628 15987280 19221670 14918700 9952817 25558570 TRUE FALSE FALSE 15061776.23 12040270.52 5830956.686 15730495.47 6146157.366 14014931.94 14412204.86 11522037.68 10815535.19 19158537.71 0.786165231 0.628454567 0.304352909 0.821069734 0.32080514 0.731524094 0.752260171 0.60140486 0.56452822 1 24.19148411 EEPSQNDIS(ph)PK ddPTM_HeLa_A485_30min_R1 4 EEPSQNDISPK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 EEPSQNDIS(1)PK;EEPSQNDIS(1)PK;EEPSQNDIS(1)PK;EEPSQNDIS(1)PK ;;; 183.96 1.08E-14 2761540000 1666950 1033570 913880 3871100 2430910 1065780 2197240 1646270 1387260 5902550 TRUE FALSE FALSE 2037757.277 1154437.021 1251962.242 4082568.391 2188880.065 1121582.593 1727781.724 1242519.701 1665670.357 4431152.913 0.459870674 0.260527462 0.282536456 0.921333222 0.493975294 0.253113042 0.389916971 0.280405512 0.375899995 1 22.07925068 -10.48693492 2.979552879 1.017321017 0.4127807 0.467973402 0.187744561 65193658.55 74958530.46 9312478.606 0.052419502 3.26E-11 10.48693492 -0.604540317 EEPSQNDIS(ph)PK ddPTM_HeLa_A486_30min_R1 4 EEPSQNDISPK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 EEPSQNDIS(1)PK;EEPSQNDIS(1)PK;EEPSQNDIS(1)PK;EEPSQNDIS(1)PK ;;; 143.94 1.02E-06 5564080000 3139059 4720565 2361495 3911387 4467991 6280650 8131800 6921580 3953770 7548010 TRUE FALSE FALSE 2919027.174 4346490.237 3275929.107 9105906.607 3907573.906 5505807.26 6097137.631 5345687.331 4296485.967 5657939.167 0.515917031 0.768210847 0.578996877 1.609403413 0.690635546 0.973111781 1.077625165 0.944811737 0.759372952 1 22.43184523 EEPVLT(ph)LVDEAIVK ddPTM_HeLa_A485_30min_R1 1 EEPVLTLVDEAIVK 14 0 Q02156 Q02156 PRKCE Protein kinase C epsilon type 1 0 EEPVLT(1)LVDEAIVK 69.716 0.014195 0 3254 2765.1 2330.2 3184.8 5172.1 3207.5 5809.6 5410.7 2193 4372.2 TRUE FALSE FALSE 3977.841074 3088.454392 3192.237948 3358.77756 4657.147564 3375.43974 4568.3315 4083.717341 2633.114985 3282.291004 1.211909934 0.940944721 0.972563963 1.023302795 1.418871013 1.028379183 1.391811845 1.244166753 0.802218628 1 11.68048744 -3.925741477 19.88394188 1.108786062 4.303455272 0.027868812 0.189974218 1668.445391 470115.3672 0.046507797 12348.39608 0.000118647 3.925741477 3.194669211 EEQMKEGEET(ph)EGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_HeLa_A486_30min_R1 2 EEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENK 35 3 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 2 0 EEQMKEGEET(1)EGS(1)EEDDKENDKTEEMPNDSVLENK;EEQMKEGEET(0.99)EGS(0.972)EEDDKENDKT(0.035)EEMPNDS(0.002)VLENK ; 87.199 4.63E-05 271920000 85925 65150 18708.4 124658 44130 108717 172103 150079 49420 370940 TRUE FALSE FALSE 79902.10122 59987.27673 25952.79351 290210.1239 38594.8039 95304.60189 129041.0091 115909.2879 53703.76539 278054.2096 0.287361595 0.215739502 0.093337172 1.043717785 0.138803163 0.342755472 0.464085796 0.416858598 0.19314135 1 18.08500665 -10.29795913 3.37867281 1.00268432 0.361844082 0.363052327 0.256123819 93466448.54 136101703.7 2566392.489 0.066496549 5.04E-11 10.29795913 -0.640840239 EEQMKEGEETEGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_HeLa_A486_30min_R1 1 EEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENK 35 3 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 EEQMKEGEET(0.027)EGS(0.973)EEDDKENDKTEEMPNDSVLENK 125.07 3.80E-06 243550000 67890 42323 6917.3 111650 24841 101280 152890 123330 31655 366470 TRUE FALSE FALSE 63131.26158 38969.17134 9595.863812 259926.8425 21725.21015 88785.10334 114635.3049 95250.45127 34398.88089 274703.5267 0.229815985 0.141859014 0.03493171 0.946208611 0.079086026 0.323203362 0.417305545 0.346739092 0.125221839 1 18.06751591 -11.06936553 2.557137385 2.052337843 0.300660204 0.422186117 0.247728167 21256811.68 7102152.292 130530088.8 0.060862037 8.52E-12 11.06936553 -1.751677639 EEQMS(ph)VQGICADQVK ddPTM_HeLa_A486_30min_R1 1 EEQMSVQGICADQVK 15 0 Q9HCE0-2;Q9HCE0 Q9HCE0-2 EPG5 Ectopic P granules protein 5 homolog 1 0 EEQMS(1)VQGICADQVK 59.248 0.0069791 0 254530 218290 109090 62906 146280 224410 238780 206530 160910 320220 TRUE FALSE FALSE 236688.7614 200991.9054 151332.5695 146448.3471 127932.1984 196724.5758 179034.7184 159507.6275 174857.8084 240034.8277 0.98606008 0.837344761 0.630460883 0.610112909 0.532973484 0.819566801 0.745869756 0.664518683 0.728468489 1 17.87288422 -10.65852729 8.312679217 1.000404923 0.720793377 0.300661528 0.123793315 0.000992399 4.08E-05 0.128043175 0.031011923 2.20E-11 10.65852729 -0.279611546 EEQNSSSLLEENKVHADLVISKPVSKS(ph)PER ddPTM_HeLa_A486_30min_R1 1 EEQNSSSLLEENKVHADLVISKPVSKSPER 30 3 H0Y7Y8;Q4LE39-4;Q4LE39-3;Q4LE39-2;Q4LE39;H7C5R6 H0Y7Y8 ARID4B AT-rich interactive domain-containing protein 4B 1 0 EEQNSSSLLEENKVHADLVIS(0.058)KPVS(0.15)KS(0.792)PER 107.45 0.0001538 137950000 192930 149820 64587 94907 168600 212300 288550 240420 129950 313100 TRUE FALSE FALSE 179406.6033 137947.7176 89596.8161 220948.2923 147452.6159 186108.5845 216351.738 185681.6143 141214.1706 234697.7221 0.764415614 0.587767603 0.381754093 0.941416433 0.628266072 0.792971414 0.921831435 0.791152179 0.601685306 1 17.84044431 -5.270224448 24.99858838 0.798591229 0.578957948 0.34199403 0.1474394 739.552478 2104452.572 0.040979463 0.061833576 5.37E-06 5.270224448 -0.219633281 EEQRS(ph)PFNDRFPLK ddPTM_HeLa_A485_30min_R1 4 EEQRSPFNDRFPLK 14 2 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK ;;; 170.61 1.65E-12 1554160000 2133030 1886320 1822160 2969750 2767360 2107470 2581730 2217670 2214410 3630550 TRUE FALSE FALSE 2607515.165 2106908.715 2496252.81 3131979.923 2491831.922 2217813.87 2030122.295 1673782.955 2658821.775 2725520.7 0.956703489 0.773029798 0.915881068 1.149130851 0.914259034 0.813721162 0.744856678 0.61411493 0.975528006 1 21.37810045 -6.23713664 4.571794496 0.799283123 0.944027061 0.131540794 0.134650163 0.346843727 18.72152406 0.047412874 0.04555475 5.79E-07 6.23713664 0.144743938 EEQRS(ph)PFNDRFPLK ddPTM_HeLa_A486_30min_R1 6 EEQRSPFNDRFPLK 14 2 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK;EEQRS(1)PFNDRFPLK ;;;;; 209.7 1.45E-22 2086030000 4293250 5268610 3210970 1844383 4740350 5132230 5519430 5455700 4401990 5189400 TRUE FALSE FALSE 3992315.345 4851106.156 4454343.577 4293816.834 4145771.101 4499067.643 4138410.235 4213556.207 4783558.038 3889940.463 1.026317853 1.247090078 1.145092996 1.103825849 1.065767238 1.156590361 1.063874955 1.083192981 1.229725258 1 21.89131664 -5.245217323 6.286307333 1.10320381 1.150574157 0.046291036 0.07591451 0.466781453 80.83498728 0.019941101 0.033317472 5.69E-06 5.245217323 0.047370347 EEQS(ph)NTNLAK ddPTM_HeLa_A486_30min_R1 1 EEQSNTNLAK 10 0 Q9UKX2-2 Q9UKX2-2 1 0 EEQS(0.5)NT(0.5)NLAK 56.548 0.036716 166870000 103660 313610 563690 16363 439050 117710 80379 128520 281550 45987 TRUE FALSE FALSE 96393.9693 288758.4015 781965.8641 38093.89094 383980.255 103188.137 60267.32404 99258.80157 305954.9807 34471.55587 2.796333582 8.376715066 22.68437975 1.105081856 11.13904624 2.993428477 1.748320391 2.879440717 8.875577935 1 15.0731188 -6.060256433 1.60541701 3.53322782 10.05940671 0.172171306 5.850554344 0.666242074 3.466124346 2.376587358 2.517194195 8.70E-07 6.060256433 6.526178891 EEQT(ph)DT(ph)SDGESVTHHIR ddPTM_HeLa_A485_30min_R1 1 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 EEQT(0.997)DT(0.73)S(0.273)DGESVTHHIR 131.59 7.29E-06 1207200000 462140 605660 532010 367580 685590 487610 656010 683130 457200 560850 TRUE FALSE FALSE 564941.4486 676486.6685 728822.6378 387659.9646 617330.2523 513140.5056 515848.1044 515591.2964 548955.8463 421040.4167 1.341774866 1.606702449 1.731003982 0.920719126 1.466201884 1.218744057 1.225174791 1.224564854 1.303807959 1 18.6835992 -1 0.105269202 0.876178374 2.850694036 0.30191538 0.197861707 144.4654489 1.071619135 2.132980364 41.30617777 0.1 1 1.974515662 EEQT(ph)DTS(ph)DGESVTHHIR ddPTM_HeLa_A485_30min_R1 1 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 EEQT(0.982)DT(0.018)S(0.999)DGESVTHHIR 171.84 5.14E-12 1232800000 594680 692260 691480 423390 820540 597640 733280 817530 543510 670490 TRUE FALSE FALSE 726964.5144 773213.7851 947287.2269 446518.7236 738844.1565 628931.5063 576608.7377 617029.4857 652587.4716 503349.1825 1.444254883 1.536137958 1.881968343 0.887095359 1.467856077 1.249493449 1.145544202 1.225847795 1.296490576 1 18.94120005 -5.257360832 24.9983176 1.204405164 1.612322136 0.546243028 0.182502135 278.8994121 1709430.294 0.048569281 0.080364957 5.53E-06 5.257360832 0.407916972 EEQT(ph)DTS(ph)DGESVTHHIR ddPTM_HeLa_A486_30min_R1 2 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 EEQT(0.999)DT(0.013)S(0.988)DGESVTHHIR;EEQT(1)DT(0.079)S(0.921)DGESVTHHIR ; 166.91 8.97E-12 2762000000 1695050 1843980 1569140 208120 2028110 1625530 1815410 1819360 1754860 1211930 TRUE FALSE FALSE 1576235.748 1697856.309 2176753.031 484513.8778 1773725.532 1424988.636 1361175.217 1405131.444 1906972.678 908454.8397 1.735073313 1.8689496 2.396104832 0.53333843 1.952464179 1.568585001 1.498341092 1.546726797 2.099138663 1 19.79305527 -10.96776851 2.843053997 0.453176642 1.675313989 0.163222753 0.46694735 44215518.52 33647256.25 157044193.7 0.117143672 1.08E-11 10.96776851 1.222137347 EEQTDTS(ph)DGESVTHHIR ddPTM_HeLa_A485_30min_R1 2 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 EEQTDT(0.001)S(0.998)DGESVTHHIR;EEQTDT(0.01)S(0.987)DGES(0.002)VT(0.001)HHIR ; 153.36 2.24E-08 3308100000 381840 574650 584910 338480 705740 504870 522350 557860 576120 565190 TRUE FALSE FALSE 466778.9907 641850.3187 801292.5491 356970.3053 635474.0476 531304.2125 410745.6553 421043.9603 691741.9995 424298.5346 1.100119262 1.51273282 1.888511234 0.841318733 1.497705026 1.252194314 0.968058152 0.992329518 1.630319087 1 18.69472017 -5.266927843 24.99794457 1.177335912 1.501682272 0.213893686 0.291002711 708.6215383 3227513.943 0.080914805 0.123929263 5.41E-06 5.266927843 0.32434636 EEQTDTS(ph)DGESVTHHIR ddPTM_HeLa_A486_30min_R1 3 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 EEQTDT(0.003)S(0.985)DGES(0.009)VT(0.004)HHIR;EEQTDT(0.003)S(0.988)DGES(0.003)VT(0.006)HHIR;EEQTDT(0.014)S(0.957)DGES(0.014)VT(0.014)HHIR ;; 130.01 9.06E-06 3663220000 639281 719635 629484 80946.1 860679 608357 616476 667803 652627 459861 TRUE FALSE FALSE 594470.7032 662608.5017 873237.063 188446.6116 752724.6143 533304.0987 462227.1844 515758.8349 709197.2338 344708.8124 1.724559053 1.922226755 2.533260049 0.546683475 2.183653528 1.547114781 1.340920707 1.496215984 2.057380631 1 18.39501866 -11.40814425 0.109999433 7.19E-14 2.130469603 0.135110855 0.515953364 170.1990106 2.352632163 54.53459126 7.858235527 3.91E-12 11.40814425 2.130469603 EERLS(ph)PR ddPTM_HeLa_A485_30min_R1 6 EERLSPR 7 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 EERLS(1)PR;EERLS(1)PR;EERLS(1)PR;EERLS(1)PR;EERLS(1)PR;EERLS(1)PR ;;;;; 123.86 0.00086364 15914230000 4480460 6448330 6481170 4832370 7281710 6488910 7531130 7919360 5804770 6746850 TRUE FALSE FALSE 5477122.87 7202406.1 8878824.487 5096350.137 6556717.385 6828659.294 5922042.552 5977124.543 6969734.094 5064984.462 1.081370123 1.421999644 1.752981585 1.00619265 1.294518756 1.348209327 1.169212383 1.180087439 1.376062286 1 22.27212641 -13.81660512 0.148564972 1.73E-11 1.392213672 0.159662693 0.198773473 231.4534904 2.154882368 68.54415915 1.060821769 1.53E-14 13.81660512 1.392213672 EERLS(ph)PR ddPTM_HeLa_A486_30min_R1 6 EERLSPR 7 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 EERLS(1)PR;EERLS(1)PR;EERLS(1)PR;EERLS(1)PR;EERLS(1)PR;EERLS(1)PR ;;;;; 123.86 0.00086364 13206230000 4627990 5121730 4570510 1904031 6651920 4782120 5312250 5684790 4470430 5494690 TRUE FALSE FALSE 4303591.8 4715865.462 6340333.875 4432680.392 5817574.167 4192150.655 3983068.863 4390487.415 4857930.472 4118783.86 1.044869541 1.14496551 1.53937038 1.076210975 1.412449491 1.017812733 0.967049741 1.065966937 1.17945749 1 21.97378699 -6.291553113 24.95888221 1.045242306 1.245230276 0.306536112 0.148526836 877.9003661 727619.0548 0.052107605 0.045960472 5.11E-07 6.291553113 0.199987969 EERS(ph)PQTLAPVGEDAMK ddPTM_HeLa_A485_30min_R1 4 EERSPQTLAPVGEDAMK 17 1 Q92797 Q92797 SYMPK Symplekin 1 0 EERS(1)PQTLAPVGEDAMK;EERS(1)PQTLAPVGEDAMK;EERS(1)PQTLAPVGEDAMK;EERS(1)PQTLAPVGEDAMK ;;; 240.87 1.10E-42 2203490000 3013310 2902260 2307780 4658970 3695520 3269310 4887410 4076980 2946540 6256300 TRUE FALSE FALSE 3683610.414 3241654.061 3161523.857 4913477.734 3327581.053 3440486.016 3843174.927 3077094.263 3537883.551 4696719.549 0.784294309 0.690195364 0.673134477 1.046150975 0.708490473 0.732529584 0.818267918 0.655158187 0.753266938 1 22.16322202 -9.902875764 4.502507548 1.000002598 0.762011519 0.310791822 0.106151313 141360119.4 288999523 5993.735795 0.026588629 1.25E-10 9.902875764 -0.237991079 EERS(ph)PQTLAPVGEDAMK ddPTM_HeLa_A486_30min_R1 3 EERSPQTLAPVGEDAMK 17 1 Q92797 Q92797 SYMPK Symplekin 1 0 EERS(0.999)PQT(0.001)LAPVGEDAMK;EERS(1)PQTLAPVGEDAMK;EERS(1)PQTLAPVGEDAMK ;; 258.34 8.25E-52 1620460000 2568660 3079200 1712130 1321220 2763280 3420700 4220800 3813800 2574100 4250600 TRUE FALSE FALSE 2388610.199 2835192.978 2375112.588 3075866.931 2416683.656 2998688.813 3164711.197 2945480.995 2797225.061 3186222.093 0.749668456 0.88982905 0.745432214 0.965364887 0.758479348 0.941142433 0.993248777 0.924443089 0.877912769 1 21.6034154 -6.32874325 10.13353321 0.945661787 0.829311833 0.434945798 0.071305417 0.618880399 90.99471725 0.023805744 0.020990188 4.69E-07 6.32874325 -0.116349955 EES(ph)DDELS(ph)LGHGR ddPTM_HeLa_A485_30min_R1 1 EESDDELSLGHGR 13 0 E7EVM7;Q9H5I5-2;Q9H5I5;Q9H5I5-3;Q9H5I5-4 E7EVM7 PIEZO2 Piezo-type mechanosensitive ion channel component;Piezo-type mechanosensitive ion channel component 2 2 0 EES(1)DDELS(1)LGHGR 99.238 0.0018141 30274000 100840 96196 60250 158380 70325 85138 127290 98824 77494 243750 TRUE FALSE FALSE 123271.5101 107445.2854 82538.98221 167031.8984 63323.19607 89595.69403 100093.4516 74587.25905 93046.33498 182987.6109 0.673660416 0.587172459 0.451063227 0.912804411 0.346051822 0.489627104 0.546995784 0.407608246 0.508484342 1 17.48138645 -10.37789201 5.82573457 1.000108215 0.544462544 0.45031317 0.150106322 0.000208311 2.22E-05 0.143501691 0.03479608 4.19E-11 10.37789201 -0.455645672 EES(ph)DDELS(ph)LGHGR ddPTM_HeLa_A486_30min_R1 1 EESDDELSLGHGR 13 0 E7EVM7;Q9H5I5-2;Q9H5I5;Q9H5I5-3;Q9H5I5-4 E7EVM7 PIEZO2 Piezo-type mechanosensitive ion channel component;Piezo-type mechanosensitive ion channel component 2 2 0 EES(1)DDELS(1)LGHGR 60.55 0.012209 0 82090 75986 61272 43598 77980 89725 91227 73246 77352 144890 TRUE FALSE FALSE 76335.91491 69964.59262 84998.15932 101498.3473 68199.02127 78655.64176 68401.0397 56569.48475 84056.93364 108608.6009 0.702853312 0.644190166 0.782609836 0.934533236 0.62793389 0.724211905 0.629793949 0.520856399 0.773943619 1 16.72877883 -8.019336678 24.52674938 1.000000008 0.698094407 0.438110217 0.103758073 1109.380432 1407144.045 0.106815095 0.027579539 9.56E-09 8.019336678 -0.301905601 EES(ph)DEEEEDDEESGR ddPTM_HeLa_A485_30min_R1 2 EESDEEEEDDEESGR 15 0 Q96EV2;A8MTF7;Q96EV2-2;H7BXM6;H7C0H2 Q96EV2 RBM33 RNA-binding protein 33 1 0 EES(1)DEEEEDDEESGR;EES(1)DEEEEDDEESGR ; 384.36 3.16E-164 377850000 227660 235510 142732 217136 165636 177448 244406 167372 124061 231413 TRUE FALSE FALSE 278302.1816 263050.8458 195534.5064 228997.5899 149144.6983 186738.9029 192186.6615 126323.7546 148958.9047 173725.9979 1.601960472 1.514170872 1.125533937 1.318153832 0.858505348 1.074904764 1.106263103 0.72714364 0.857435885 1 17.40645414 -4.214778589 0.480058679 0.884396752 2.212630601 0.748430329 0.135998222 2.356796713 0.406564847 0.089825805 1.803626127 6.10E-05 4.214778589 1.32823385 EES(ph)DEEEEDDEESGR ddPTM_HeLa_A486_30min_R1 2 EESDEEEEDDEESGR 15 0 Q96EV2;A8MTF7;Q96EV2-2;H7BXM6;H7C0H2 Q96EV2 RBM33 RNA-binding protein 33 1 0 EES(1)DEEEEDDEESGR;EES(1)DEEEEDDEESGR ; 414.39 2.61E-188 179260000 299740 300270 128589 85338 177955 207820 226800 214470 210202 354180 TRUE FALSE FALSE 278729.7739 276475.5116 178382.1045 198671.1767 155634.2245 182181.2814 170052.2412 165639.8628 228422.4786 265491.0227 1.049865156 1.041374239 0.671895052 0.748315987 0.586212758 0.686205053 0.640519741 0.623900052 0.860377411 1 18.01830355 -4.757619829 24.96807546 0.704908263 1.045619867 0.531700563 0.118070572 60.65647521 396489.9813 0.028420302 0.069473091 1.75E-05 4.757619829 0.340711604 EES(ph)DGEYDEFGR ddPTM_HeLa_A485_30min_R1 4 EESDGEYDEFGR 12 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR ;;; 353.92 5.38E-87 11624470000 2693550 3202870 2155080 3075720 2438150 2785370 3627110 3709540 2086370 3305040 TRUE FALSE FALSE 3292720.905 3577417.785 2952333.772 3243738.795 2195399.225 2931207.666 2852148.318 2799769.499 2505085.322 2481154.353 1.327092327 1.441836048 1.189903308 1.307350666 0.884829766 1.18138868 1.149524742 1.128414077 1.009645095 1 21.24258006 -5.282315354 1.616324549 1.080573163 1.370660512 0.549978016 0.107209713 0.297038597 1.508037655 0.033558143 0.072018561 5.22E-06 5.282315354 0.290087349 EES(ph)DGEYDEFGR ddPTM_HeLa_A486_30min_R1 6 EESDGEYDEFGR 12 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR;EES(1)DGEYDEFGR ;;;;; 359.14 2.44E-87 9056340000 4154720 3994770 2115763 1673689 2502463 3698730 4519960 3903610 3018089 6286150 TRUE FALSE FALSE 3863495.583 3678209.876 2935043.096 3896432.576 2188580.756 3242418.299 3389018.201 3014843.218 3279699.385 4712057.124 0.819916966 0.780595349 0.622879354 0.826906906 0.464463969 0.688110991 0.719222648 0.639814658 0.696022841 1 22.1679256 -8.095639578 18.97376761 1 0.691367206 0.448754404 0.101231206 6525.644614 1294614.044 0.097004262 0.025046293 8.02E-09 8.095639578 -0.308632794 EES(ph)DGEYDEFGRK ddPTM_HeLa_A485_30min_R1 4 EESDGEYDEFGRK 13 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK ;;; 225.6 8.66E-28 12897620000 4382390 3412660 1952680 5520590 3153790 3965740 6029230 5695500 2474900 6240590 TRUE FALSE FALSE 5357237.536 3811740.901 2675057.59 5822165.853 2839787.594 4173380.014 4741035.756 4298669.695 2971589.729 4684925.763 1.143505321 0.813618207 0.570992525 1.242744527 0.606154236 0.890810277 1.011976709 0.917553428 0.634287474 1 22.15959476 -4.256422455 23.80156941 0.853270116 1.143505563 0.160375638 0.198550232 497.9319617 2362158.029 0.047162014 0.373401319 5.54E-05 4.256422455 0.290235447 EES(ph)DGEYDEFGRK ddPTM_HeLa_A486_30min_R1 4 EESDGEYDEFGRK 13 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK;EES(1)DGEYDEFGRK ;;; 220.46 1.40E-27 13790400000 5334260 4080410 1332840 1886690 2423170 4323330 5285330 4359900 2949080 8153890 TRUE FALSE FALSE 4960355.92 3757063.451 1848951.343 4392309.668 2119233.423 3789961.501 3962884.531 3367245.946 3204708.629 6112102.871 0.811562898 0.614692444 0.302506581 0.718624958 0.346727381 0.620074888 0.648366792 0.550914475 0.524321775 1 22.54323739 -10.61750351 2.612010723 1.043559221 0.56515541 0.434613598 0.146706905 16767844.43 14934866.76 4967461.41 0.037785996 2.41E-11 10.61750351 -0.478403811 EES(ph)EEEEDEDDEEEEEEEKEK ddPTM_HeLa_A485_30min_R1 4 EESEEEEDEDDEEEEEEEKEK 21 1 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 1 0 EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK ;;; 261.03 2.83E-59 23745100000 2952091 2210534 1855038 5265130 3173784 3235199 5204715 4054466 2214549 7235820 TRUE FALSE FALSE 3608773.458 2469036.722 2541293.751 5552750.72 2857790.921 3404589.017 4092685.122 3060101.856 2658988.671 5432063.239 0.664346731 0.454530187 0.467832136 1.022217613 0.526096769 0.626757986 0.753431052 0.563340617 0.489498843 1 22.37306884 -10.49479335 2.958375 1.012103796 0.621128298 0.333676112 0.161625355 68727222.38 78207910.1 6782327.048 0.04007175 3.20E-11 10.49479335 -0.390975498 EES(ph)EEEEDEDDEEEEEEEKEK ddPTM_HeLa_A486_30min_R1 5 EESEEEEDEDDEEEEEEEKEK 21 1 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 1 0 EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK ;;;; 262.18 2.51E-59 24226400000 1993930 1613550 364242 2579110 1105290 2862780 4511980 3608660 1296270 6540790 TRUE FALSE FALSE 1854165.804 1485686.422 505286.2571 6004298.421 966654.2218 2509599.31 3383034.881 2787046.894 1408631.727 4902933.611 0.378174773 0.303019894 0.103057944 1.224633841 0.197158334 0.511856678 0.69000218 0.568444755 0.287303855 1 22.2252138 -14 0.186148065 3.071552714 0.388350208 0.207508483 0.302835406 226.1767633 2.199369102 175.117183 0.866385036 1.00E-14 14 -2.683202506 EES(ph)EEEEDEDDEEEEEEEKEKS(ph)LIVEGK ddPTM_HeLa_A486_30min_R1 1 EESEEEEDEDDEEEEEEEKEKSLIVEGK 28 2 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 2 0 EES(1)EEEEDEDDEEEEEEEKEKS(1)LIVEGK 263.28 1.70E-63 322700000 51568 43779 11805 125370 36308 111190 202980 141440 37491 231580 TRUE FALSE FALSE 47953.3495 40309.7926 16376.21215 291867.6958 31753.91208 97472.5083 152192.2571 109237.1996 40740.75007 173590.8607 0.276243515 0.232211491 0.094337986 1.681354046 0.18292387 0.561507143 0.876729665 0.629279671 0.234694096 1 17.40533147 EES(ph)EES(ph)DDDMGFGLFD ddPTM_HeLa_A485_30min_R1 4 EESEESDDDMGFGLFD 16 0 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 2 0 EES(1)EES(1)DDDMGFGLFD;EES(1)EES(1)DDDMGFGLFD;EES(1)EES(1)DDDMGFGLFD;EES(1)EES(1)DDDMGFGLFD ;;; 204.35 3.80E-25 362495000 236546 355261 252235 295287 321262 307623 401187 485734 240463 373375 TRUE FALSE FALSE 289164.8416 396805.6836 345547.2229 311417.7811 289276.0273 323729.6646 315470.1201 366606.9749 288721.7184 280299.484 1.031628163 1.415648998 1.232778662 1.111018032 1.03202483 1.154942064 1.125475208 1.307911701 1.030047271 1 18.09660956 -14 0.111440975 0.467116599 1.260768669 0.156592439 0.119381134 317.5233938 2.340461364 38.64057368 1.475652951 1.00E-14 14 0.79365207 EES(ph)EES(ph)DEDMGFGLFD ddPTM_HeLa_A485_30min_R1 16 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 0 EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD ;;;;;;;;;;;;;;; 246.96 1.23E-42 5247638000 991850 1156561 947398 1306967 1338286 1050856 1598732 1604173 900539 1737866 TRUE FALSE FALSE 1212483.611 1291810.748 1297879.945 1378363.298 1205041.547 1105877.195 1257149.848 1210747.057 1081268.917 1304647.989 0.9293569 0.99016038 0.99481236 1.056502067 0.92365263 0.847644119 0.963593136 0.928025848 0.828782113 1 20.31522917 -5.933678342 10.35645846 0.909291474 0.992524435 0.324675227 0.054685065 0.490362851 73.52237531 0.016662023 0.018899442 1.16E-06 5.933678342 0.083232961 EES(ph)EES(ph)DEDMGFGLFD ddPTM_HeLa_A486_30min_R1 22 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 0 EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD ;;;;;;;;;;;;;;;;;;;;; 278.16 2.80E-58 4472169000 2863004 2823353 1675651.2 1669882 2437280 2764646 3278950 3052580 2303457 3965927 TRUE FALSE FALSE 2662322.204 2599620.226 2324508.22 3887569.687 2131573.616 2423572.085 2458522.029 2357574.171 2503122.507 2972833.065 0.895550522 0.874458864 0.781916835 1.307698617 0.717017595 0.815239885 0.826996328 0.793039542 0.841999013 1 21.50340702 EES(ph)EES(ph)EAEPVQR ddPTM_HeLa_A485_30min_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 EES(1)EES(1)EAEPVQR;EES(1)EES(1)EAEPVQR ; 332.08 1.38E-80 11946600000 1486150 1478790 1358510 2108010 2119400 1542740 2392500 2370900 1401360 2616700 TRUE FALSE FALSE 1816738.94 1651721.627 1861079.381 2223165.249 1908385.094 1623515.481 1881322.83 1789433.058 1682600.098 1964404.847 0.924829188 0.840825469 0.947401135 1.131724579 0.971482583 0.826466847 0.957706266 0.910928855 0.856544465 1 20.90566086 EES(ph)EES(ph)EAEPVQR ddPTM_HeLa_A486_30min_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 EES(1)EES(1)EAEPVQR;EES(1)EES(1)EAEPVQR ; 300.71 1.55E-57 12029000000 1967480 2091100 1295850 1054110 2108500 2132700 2703100 2609800 1614700 2670200 TRUE FALSE FALSE 1829569.812 1925393.62 1797637.824 2454021.352 1844032.269 1869589.158 2026755.79 2015605.512 1754663.496 2001564.54 0.914069857 0.96194431 0.898116343 1.226051573 0.921295433 0.934063889 1.012585779 1.007014998 0.876645974 1 20.93269671 EES(ph)EESDEDMGFGLFD ddPTM_HeLa_A485_30min_R1 1 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 1 0 EES(0.591)EES(0.409)DEDMGFGLFD 100.88 0.00046691 26214000 32489 34086 34999 34314 44240 39286 45275 47964 31608 49543 TRUE FALSE FALSE 39716.06596 38072.06119 47946.58653 36188.48693 39835.31026 41342.95421 35601.62639 36200.7538 37951.43567 37192.84187 1.067841659 1.023639477 1.289134794 0.972996015 1.071047768 1.111583631 0.957217158 0.973325833 1.020396231 1 15.18273737 -6.759411099 24.99831636 0.985511951 1.089343101 0.287356893 0.07838235 70.98227348 874864.4352 0.0308807 0.022704619 1.74E-07 6.759411099 0.10383115 EES(ph)EESEAEPVQR ddPTM_HeLa_A485_30min_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EES(0.994)EES(0.006)EAEPVQR;EES(0.995)EES(0.005)EAEPVQR ; 361.96 1.44E-95 5295500000 2119690 2387420 2402800 3820180 3592500 2803330 4015600 3766200 3005560 4890200 TRUE FALSE FALSE 2591207.728 2666608.001 3291695.709 4028866.76 3234818.086 2950108.024 3157634.256 2842533.545 3608748.323 3671163.137 0.705827453 0.726365978 0.89663564 1.097436047 0.88114256 0.803589466 0.860118207 0.774286905 0.982998627 1 21.8078058 -4.755083048 5.823973303 0.904230456 0.713058969 0.426227338 0.090708139 0.155023788 18.3293477 0.024934891 0.061350657 1.76E-05 4.755083048 -0.191171487 EES(ph)EESEAEPVQR ddPTM_HeLa_A486_30min_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EES(0.587)EES(0.413)EAEPVQR;EES(0.993)EES(0.007)EAEPVQR ; 311.54 2.52E-68 3885200000 1742670 1725750 1052820 707160 1809840 1846010 2116800 2023470 1518530 2699300 TRUE FALSE FALSE 1620517.832 1588995.285 1460500.099 1646304.218 1582832.991 1618268.055 1587154.251 1562770.053 1650157.403 2023377.711 0.800897343 0.785318172 0.721812883 0.81364157 0.782272624 0.799785451 0.78440829 0.772357057 0.815545904 1 20.94833423 -8.235822696 3.128634126 0.999991122 0.782460144 0.885643596 0.02330667 0.490470622 6.106497122 0.022429152 0.005963575 5.81E-09 8.235822696 -0.217530978 EES(ph)PLR ddPTM_HeLa_A485_30min_R1 9 EESPLR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR ;;;;;;;; 183.04 0.0030323 1.74E+11 32784700 40543450 35376450 36770620 41189300 36130330 47976700 43931970 32727470 46408200 TRUE FALSE FALSE 40077543.41 45284653.8 48463670.99 38779305.86 37088348.67 38022058.21 37726086.11 33157585.47 39295573.03 34839489.82 1.150348171 1.299808178 1.391055703 1.11308478 1.064549133 1.091349455 1.082854149 0.951724197 1.127903228 1 25.05422016 -5.438535944 5.325168087 1.056586914 1.281314974 0.66938027 0.071423941 0.130690705 6.164422415 0.020430191 0.030365617 3.64E-06 5.438535944 0.224728061 EES(ph)PLR ddPTM_HeLa_A486_30min_R1 10 EESPLR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR;EES(1)PLR ;;;;;;;;; 146.27 0.0039635 1.57E+11 31233810 32371750 22811880 10499930 29601720 30266000 33799830 31689940 26500830 34629090 TRUE FALSE FALSE 29044481.21 29806494.63 31645250.86 24444367.68 25888796.25 26532088.64 25342755.04 24474832.45 28797943.28 25957740.47 1.118914077 1.14827 1.219106528 0.941698593 0.997343982 1.022126278 0.976308206 0.942872223 1.109416412 1 24.62966147 -5.262268584 24.999656 0.996164489 1.160714184 0.691618757 0.050028761 40.16743209 1211026.315 0.01358224 0.021547133 5.47E-06 5.262268584 0.164549695 EES(ph)PLRIK ddPTM_HeLa_A485_30min_R1 4 EESPLRIK 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EES(1)PLRIK;EES(1)PLRIK;EES(1)PLRIK;EES(1)PLRIK ;;; 131.82 0.00025753 2361020000 408188 2233190 721900 169418 2077870 3624800 4772140 18648200 786100 674230 TRUE FALSE FALSE 498988.0124 2494342.144 988960.8508 178672.8764 1870989.967 3814588.923 3752533.304 14074699.71 943863.0595 506156.8693 0.985836689 4.928002158 1.953862351 0.352999015 3.696462659 7.536376871 7.413775317 27.8069914 1.864763904 1 18.94922505 -6.372194908 2.271865586 9.999999961 2.254725017 0.19622047 6.951813438 0.520249873 5.269610335 2.802077451 2.401032597 4.24E-07 6.372194908 -7.745274945 EES(ph)PLRIK ddPTM_HeLa_A486_30min_R1 1 EESPLRIK 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EES(1)PLRIK 67.726 0.0089957 151420000 170680 40787 59193 74089 263490 59221 141250 224220 29314 139770 TRUE FALSE FALSE 158716.2134 37554.88958 82114.11484 172482.9363 230440.6273 51914.91514 105907.756 173170.0007 31854.96112 104770.6822 1.514891475 0.358448459 0.783750884 1.646290093 2.19947625 0.495509946 1.010852977 1.652847886 0.304044609 1 16.67687554 -7.769585236 24.99923776 0.652022545 1.182684429 0.133940469 0.562373246 448.8476503 1377437.175 0.527303855 0.145563621 1.70E-08 7.769585236 0.530661883 EES(ph)PTRINGSIPAGPK ddPTM_HeLa_A485_30min_R1 2 EESPTRINGSIPAGPK 16 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 EES(0.982)PT(0.018)RINGSIPAGPK;EES(0.974)PT(0.026)RINGSIPAGPK ; 163.78 3.20E-12 605010000 542640 1046670 679670 429000 1120620 1372880 1570110 2518020 792310 740110 TRUE FALSE FALSE 663348.3959 1169068.952 931108.2164 452435.1837 1009047.138 1444761.874 1234643.172 1900471.647 951319.3495 555614.1977 1.193901089 2.104102013 1.675817897 0.814297377 1.816093149 2.600296896 2.222123151 3.420487912 1.712194097 1 19.08372394 -6.034050325 7.01916281 2.332326232 1.486217776 0.204233275 0.662060269 0.290072855 47.08303218 0.20976227 0.214948496 9.25E-07 6.034050325 -0.846108456 EES(ph)S(ph)DDEDKES(ph)EEEPPKK ddPTM_HeLa_A485_30min_R1 2 EESSDDEDKESEEEPPKK 18 2 B4DFG0;H0Y993;P35659;A0A494C198;A0A494C028;P35659-2 B4DFG0 DEK Protein DEK 3 0 EES(1)S(1)DDEDKES(1)EEEPPKK;EES(1)S(1)DDEDKES(1)EEEPPKK ; 97.974 0.0004419 1140980000 1322250 593060 241550 3524200 628310 687420 1563430 1021190 355590 3954100 TRUE FALSE FALSE 1616379.951 662413.2081 330909.3967 3716718.122 565753.2503 723412.2482 1229390.408 770741.5513 426953.6513 2968415.64 0.544526154 0.223153793 0.111476773 1.252088175 0.190590981 0.243703152 0.414157098 0.25964745 0.143832166 1 21.50126168 -10.14801136 5.12691632 1.000026661 0.377774843 0.257617639 0.317816311 9.69E-05 1.61E-05 0.307735834 0.074633712 7.11E-11 10.14801136 -0.622251818 EES(ph)S(ph)EDENEVSNILR ddPTM_HeLa_A485_30min_R1 2 EESSEDENEVSNILR 15 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 2 0 EES(1)S(1)EDENEVSNILR;EES(1)S(1)EDENEVSNILR ; 114.29 0.00035339 447940000 867220 856410 646290 1097570 873170 791300 1114020 921970 671020 1452870 TRUE FALSE FALSE 1060130.097 956559.6997 885379.5654 1157527.47 786234.1289 832731.2444 876000.5263 695855.4119 805687.559 1090696.247 0.971975561 0.877017504 0.811756314 1.061273909 0.720855262 0.763485935 0.803157184 0.637991938 0.738691053 1 20.05681794 -5.788813707 24.99933748 0.75985892 0.918203237 0.323169264 0.106190643 239.5745357 218787.808 0.031633794 0.035877659 1.63E-06 5.788813707 0.158344316 EES(ph)S(ph)EDENEVSNILR ddPTM_HeLa_A486_30min_R1 2 EESSEDENEVSNILR 15 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 2 0 EES(1)S(1)EDENEVSNILR;EES(1)S(1)EDENEVSNILR ; 183.77 6.62E-13 422640000 700020 651140 357720 322120 486020 629950 725120 654060 479740 930540 TRUE FALSE FALSE 650952.2129 599541.295 496238.7641 749911.639 425058.8396 552233.1739 543687.3065 505144.816 521324.2495 697526.7272 0.933229061 0.859524476 0.711426164 1.075100939 0.609380004 0.791701812 0.779450142 0.724194208 0.74738964 1 19.41188897 -1.000000004 0.603075344 0.785015897 10.31927508 0.068959337 0.131172394 418.2548361 3.209178667 0.056413323 5258.850308 0.099999999 1.000000004 9.534259182 EES(ph)WESGR ddPTM_HeLa_A485_30min_R1 4 EESWESGR 8 0 Q9NQ29-3;Q9NQ29;B8ZZ08 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 1 0 EES(1)WESGR;EES(1)WESGR;EES(1)WESGR;EES(1)WESGR ;;; 172.59 1.95E-05 1802650000 960910 1033810 958620 1179670 1485880 1111400 1515660 1638780 1086450 1430420 TRUE FALSE FALSE 1174661.114 1154705.087 1313253.43 1244112.385 1337940.57 1169591.185 1191826.859 1236866.635 1304490.549 1073842.619 1.093885727 1.075301973 1.222947764 1.158561192 1.245937297 1.089164431 1.109871073 1.151813696 1.214787462 1 20.03435114 EES(ph)WESGR ddPTM_HeLa_A486_30min_R1 4 EESWESGR 8 0 Q9NQ29-3;Q9NQ29;B8ZZ08 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 1 0 EES(1)WESGR;EES(1)WESGR;EES(1)WESGR;EES(0.996)WES(0.004)GR ;;; 209.39 7.75E-07 1877330000 1995000 2063010 1534120 787040 2303280 2094460 2537000 2380940 1665070 2604860 TRUE FALSE FALSE 1855160.802 1899529.574 2128172.349 1832268.895 2014381.145 1836066.82 1902215.766 1838851.938 1809399.608 1952586.101 0.95010448 0.972827561 1.089924971 0.938380589 1.031647795 0.940325663 0.974203271 0.941752037 0.926668282 1 20.89695474 -6.279674944 24.90433428 0.95405019 0.997210519 0.167743655 0.044343289 1396.105647 1906658.044 0.015292798 0.013512959 5.25E-07 6.279674944 0.043160329 EES(ph)WGPPR ddPTM_HeLa_A485_30min_R1 2 EESWGPPR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 EES(1)WGPPR;EES(1)WGPPR ; 138.08 0.00045197 521980000 805240 914370 903040 1053880 1244140 1085410 1321240 1344210 848540 1394460 TRUE FALSE FALSE 984362.86 1021297.618 1237112.075 1111450.796 1120269.053 1142240.389 1038946.28 1014540.39 1018834.195 1046846.785 0.940312254 0.975594167 1.181750847 1.061712957 1.070136594 1.091124705 0.992453046 0.969139328 0.973240983 1 19.99761888 -6.881404518 6.243098777 0.979005031 1.056670514 0.236045706 0.061446117 0.323961191 16.39788716 0.027833173 0.018677237 1.31E-07 6.881404518 0.077665484 EES(ph)WGPPR ddPTM_HeLa_A486_30min_R1 2 EESWGPPR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 EES(1)WGPPR;EES(1)WGPPR ; 135.43 0.00048536 1155030000 938320 1149450 780600 393080 1258530 1107990 1297800 1284510 934620 1247590 TRUE FALSE FALSE 872548.6135 1058363.396 1082869.225 915110.1052 1100673.432 971297.459 973076.7133 992055.1137 1015633.614 935185.3436 0.933022122 1.131715123 1.157919371 0.978533412 1.17695753 1.038614929 1.040517497 1.060811229 1.086023879 1 19.83489279 -10.3521899 7.33322599 0.999998748 1.070512187 0.070211056 0.072340775 1.41E-06 1.25E-07 0.066610374 0.016155102 4.44E-11 10.3521899 0.070513439 EESEES(ph)DEDMGFGLFD ddPTM_HeLa_A485_30min_R1 4 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 1 0 EES(0.005)EES(0.995)DEDMGFGLFD;EESEES(1)DEDMGFGLFD;EESEES(1)DEDMGFGLFD;EESEES(1)DEDMGFGLFD ;;; 289.89 2.35E-67 1117596000 438120 522119 509219 529683 650015 555473 666410 739132 480687 668857.7 TRUE FALSE FALSE 535578.2825 583176.2752 697600.2985 558618.2411 585297.2243 584556.7074 524026.0594 557858.7181 577156.4718 502123.7848 1.066625997 1.161419341 1.389299451 1.112511014 1.165643297 1.164168528 1.043619273 1.110998393 1.149430657 1 18.93768354 -6.627190818 5.689379959 1.085695637 1.184103752 0.239895743 0.087043353 0.343046437 16.14979175 0.034755559 0.02668541 2.36E-07 6.627190818 0.098408115 EESEES(ph)DEDMGFGLFD ddPTM_HeLa_A486_30min_R1 6 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 1 0 EESEES(1)DEDMGFGLFD;EES(0.016)EES(0.984)DEDMGFGLFD;EESEES(1)DEDMGFGLFD;EESEES(1)DEDMGFGLFD;EES(0.119)EES(0.881)DEDMGFGLFD;EES(0.002)EES(0.998)DEDMGFGLFD ;;;;; 228.17 3.93E-34 1034937000 1221804 1279046 1024729 593568 1455739 1240526 1378156 1478295 1139950 1459775 TRUE FALSE FALSE 1136161.849 1177689.737 1421531.512 1381856.301 1273146.64 1087482.515 1033326.792 1141719.499 1238761.784 1094237.838 1.038313435 1.076264863 1.299106521 1.262848215 1.163500837 0.993826458 0.944334729 1.04339245 1.132077269 1 20.06149492 -6.233819481 8.438557104 1.020536693 1.175682503 0.422721835 0.084636134 0.318217135 89.85086307 0.03109763 0.030683656 5.84E-07 6.233819481 0.15514581 EESGKPGAHVTVK ddPTM_HeLa_A485_30min_R1 4 EESGKPGAHVTVK 13 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;; ;;; 151.74 3.06E-07 1655570000 2898770 2995290 2281890 2943180 3994840 3572050 4809990 4861650 3242780 4775220 FALSE FALSE TRUE 3543591.386 3345563.11 3126056.068 3103958.471 3597099.703 3759077.015 3782296.342 3669322.715 3893576.201 3584845.535 0.988492071 0.933251678 0.872019739 0.865855569 1.003418325 1.048602228 1.055079307 1.023565082 1.086121051 1 21.77347953 -5.932520659 5.049703481 1.043258133 0.913710349 0.717095408 0.037914911 0.112496486 5.509469449 0.012588372 0.014270771 1.17E-06 5.932520659 -0.129547783 EESGKPGAHVTVK ddPTM_HeLa_A486_30min_R1 3 EESGKPGAHVTVK 13 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;; ;; 154.47 1.18E-07 645504000 1584600 1645790 893380 233345 2059460 1673170 1928880 1864220 1364460 1467390 FALSE FALSE TRUE 1473527.723 1515371.607 1239320.662 543238.9526 1801143.323 1466751.297 1446253.822 1439777.802 1482732.491 1099945.993 1.33963643 1.377678192 1.126710465 0.493877841 1.637483417 1.33347574 1.314840757 1.308953177 1.348004812 1 20.06900126 EESGKPGAHVTVK(ac)K ddPTM_HeLa_A485_30min_R1 2 EESGKPGAHVTVKK 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 ; EESGKPGAHVTVK(1)K;EESGKPGAHVTVK(1)K 143.93 9.40E-06 531680000 1167680 1195850 965120 1013170 1561840 1615710 2214000 2364800 1516380 2232700 FALSE TRUE FALSE 1427426.388 1335694.255 1322158.05 1068516.912 1406337.726 1700306.077 1740960.813 1784829.092 1820703.557 1676128.98 0.851620851 0.796892286 0.788816413 0.637490864 0.839039085 1.014424366 1.038679502 1.064851878 1.086255043 1 20.67670174 -6.224653211 3.195543556 1.049338909 0.769220055 0.848035982 0.055234147 0.096318134 2.00493464 0.020681119 0.0197708 5.96E-07 6.224653211 -0.280118854 EESGKPGAHVTVK(ac)K ddPTM_HeLa_A486_30min_R1 1 EESGKPGAHVTVKK 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 EESGKPGAHVTVK(1)K 116.19 0.00050758 291390000 168240 180350 114790 16298 204140 196570 218060 203240 170130 196950 FALSE TRUE FALSE 156447.2448 166058.4092 159239.7622 37942.56766 178534.8577 172319.192 163499.0816 156966.6887 184877.0054 147632.4381 1.059707791 1.124809773 1.078623128 0.257006984 1.209319984 1.167217681 1.107473965 1.063226285 1.252279023 1 17.17165022 EESHSNDQS(ph)PQIR ddPTM_HeLa_A486_30min_R1 2 EESHSNDQSPQIR 13 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 EESHSNDQS(1)PQIR;EESHSNDQS(1)PQIR ; 185.99 2.23E-17 84947000 166215 190832 133434 49211 159213 155208 158928 141987 148332 176784 TRUE FALSE FALSE 154564.1868 175709.7773 185103.2183 114565.695 139243.0209 136060.015 119162.5334 109659.6597 161189.5372 132516.1357 1.166380124 1.325950054 1.396835316 0.864541472 1.050762763 1.026743002 0.899230367 0.827519298 1.21637668 1 17.01580851 -5.259769356 24.99982797 0.977490672 1.299344661 0.603796018 0.116031581 96.84569796 1449744.554 0.031538233 0.051149053 5.50E-06 5.259769356 0.321853989 EESKKEETPGT(ph)PK ddPTM_HeLa_A485_30min_R1 3 EESKKEETPGTPK 13 2 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 EESKKEET(0.036)PGT(0.964)PK;EESKKEETPGT(1)PK;EESKKEET(0.039)PGT(0.961)PK ;; 84.874 0.0024943 2712320000 2688920 1183310 466409 5047020 1242460 1638370 3172460 3376890 1114670 11389000 TRUE FALSE FALSE 3287060.977 1321687.811 638953.098 5322725.923 1118756.32 1724152.52 2494638.004 2548702.433 1338374.045 8549931.899 0.384454638 0.154584601 0.074731952 0.622546002 0.130849735 0.201656872 0.291772851 0.298096226 0.156536223 1 23.0274815 -10.67911883 2.619365774 1.107325044 0.256468393 0.687626989 0.150183828 16479325.37 13800332.04 11763585.84 0.037990273 2.09E-11 10.67911883 -0.850856651 EESKKEETPGT(ph)PK ddPTM_HeLa_A486_30min_R1 3 EESKKEETPGTPK 13 2 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 EESKKEET(0.004)PGT(0.996)PK;EESKKEETPGT(1)PK;EESKKEET(0.002)PGT(0.998)PK ;; 101.15 0.00070048 2424040000 3907180 2699610 698790 2783150 2005870 4622820 6135170 4355330 2411120 9824100 TRUE FALSE FALSE 3633306.859 2485683.072 969380.2022 6479313.853 1754275.081 4052503.47 4600085.575 3363716.435 2620117.823 7364081.416 0.493382223 0.337541498 0.131636269 0.879853642 0.23822049 0.550306717 0.624665225 0.45677339 0.355796966 1 22.81207415 -14 0.315090069 5.970442129 0.42984489 0.40045832 0.199705984 314.8717344 2.829503499 1041.576358 0.181219256 1.00E-14 14 -5.540597239 EESPLR ddPTM_HeLa_A485_30min_R1 1 EESPLR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 0 158.16 0.0016739 0 212580 271270 240030 239510 276360 248050 303130 308500 238940 308690 FALSE FALSE TRUE 259867.6876 302992.6668 328827.0855 252593.8248 248844.628 261037.5144 238363.7992 232839.8913 286893.0663 231739.264 1.121379619 1.307472292 1.418952834 1.089991486 1.073812973 1.126427649 1.028586158 1.004749421 1.237999385 1 17.82214298 -5.354181881 8.597210243 1.079312766 1.284774226 0.496839755 0.093346013 0.269265267 22.82977103 0.026075736 0.038720622 4.42E-06 5.354181881 0.20546146 EESPLR ddPTM_HeLa_A486_30min_R1 1 EESPLR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 0 159.75 0.0013109 0 302330 334550 248720 105040 321020 314790 337100 329890 274690 329580 FALSE FALSE TRUE 281138.2282 308039.0396 345031.045 244538.4284 280754.6782 275954.4104 252754.0145 254781.2484 298500.3504 247051.0228 1.137976379 1.246864053 1.396598326 0.989829654 1.136423865 1.116993596 1.023084267 1.031289997 1.208253854 1 17.9144495 -5.271435665 24.99401563 1.07605906 1.259118038 0.499096446 0.08634374 562.2431853 1405793.314 0.024089406 0.036225481 5.35E-06 5.271435665 0.183058978 EESREPAPAS(ph)PAPAGVEIR ddPTM_HeLa_A485_30min_R1 4 EESREPAPASPAPAGVEIR 19 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EESREPAPAS(1)PAPAGVEIR;EESREPAPAS(1)PAPAGVEIR;EESREPAPAS(1)PAPAGVEIR;EESREPAPAS(1)PAPAGVEIR ;;; 215.08 1.99E-27 18950400000 3121610 3983160 3823520 3173740 4574370 3835760 4508980 4814140 3274060 4198020 TRUE FALSE FALSE 3816001.375 4448955.913 5237999.158 3347113.38 4118929.661 4036594.462 3545599.588 3633464.617 3931133.811 3151530.873 1.21084055 1.411680892 1.662049134 1.062059524 1.306961546 1.280836084 1.125040411 1.152920521 1.247372775 1 21.58762136 -6.810767437 0.304248996 1.004717714 1.441631437 0.322984247 0.148188017 2.171653555 0.562561366 0.234868738 0.343526294 1.55E-07 6.810767437 0.436913723 EESREPAPAS(ph)PAPAGVEIR ddPTM_HeLa_A486_30min_R1 2 EESREPAPASPAPAGVEIR 19 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EES(0.005)REPAPAS(0.995)PAPAGVEIR;EESREPAPAS(1)PAPAGVEIR ; 146.04 1.04E-08 13652100000 779660 863260 773070 341176 1103660 754770 977540 1068730 716940 898590 TRUE FALSE FALSE 725009.8602 794852.1337 1072423.408 794274.9701 965228.6716 661654.1513 732949.1526 825403.5092 779084.9365 673577.2152 1.07635746 1.180046052 1.59213136 1.179189189 1.432988898 0.982298891 1.088144219 1.225402954 1.156637901 1 19.36148381 -6.264078249 24.99892314 1.104437445 1.296305859 0.308715815 0.150084304 329.7607666 3123923.99 0.05268182 0.048580824 5.44E-07 6.264078249 0.191868413 EESTAASETTEGSQGDSK(ac)NAK(ac)K(ac)K ddPTM_HeLa_A486_30min_R1 2 EESTAASETTEGSQGDSKNAKKK 23 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 3 ; EESTAASETTEGSQGDSK(1)NAK(1)K(1)K;EESTAASETTEGSQGDSK(1)NAK(1)K(1)K 317.28 4.83E-109 69152000 12344.2 26568 21347 16124.1 38877 42050 40308 44088 37101 43914 FALSE TRUE FALSE 11478.93533 24462.65492 29613.13009 37537.71967 34000.68415 36862.29853 30222.51207 34050.12483 40316.94455 32917.64857 0.348716747 0.743147095 0.89961256 1.140352404 1.032901365 1.119833893 0.918124878 1.034403316 1.224782034 1 15.00657366 -4.314859094 1.281337217 1.064101297 0.07913664 0.876583048 0.083491427 0.406818947 0.626967969 0.025033827 0.514560286 4.84E-05 4.314859094 -0.984964657 down EESYS(ph)PSKDR ddPTM_HeLa_A485_30min_R1 3 EESYSPSKDR 10 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 EES(0.001)YS(0.998)PS(0.002)KDR;EES(0.004)YS(0.968)PS(0.029)KDR;EES(0.005)YS(0.976)PS(0.018)KDR ;; 175.48 1.35E-06 3723500000 3420410 3005760 2314610 5298590 3785450 3657320 5295400 4710970 2850050 6595200 TRUE FALSE FALSE 4181268.404 3357257.485 3170880.558 5588038.555 3408557.306 3848811.62 4163994.531 3555597.221 3422028.893 4951138.016 0.844506534 0.678077944 0.640434694 1.128637202 0.688439162 0.777358984 0.841017665 0.718137368 0.691160069 1 22.23932874 EESYS(ph)PSKDR ddPTM_HeLa_A486_30min_R1 6 EESYSPSKDR 10 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 EES(0.001)YS(0.866)PS(0.134)KDR;EESYS(0.895)PS(0.105)KDR;EES(0.033)Y(0.019)S(0.926)PS(0.022)KDR;EES(0.002)YS(0.51)PS(0.488)KDR;EES(0.074)YS(0.869)PS(0.056)KDR;EES(0.058)YS(0.924)PS(0.017)KDR ;;;;; 172.74 2.59E-06 4821953000 6512800 6287960 3103861 3815145 5774130 7535010 9204710 8476290 5018640 10991300 TRUE FALSE FALSE 6056286.352 5789679.149 4305759.103 8881850.367 5049884.774 6605417.077 6901594.201 6546423.803 5453659.756 8239006.939 0.735074797 0.702715654 0.522606564 1.078024382 0.612923962 0.801724908 0.837673066 0.794564667 0.661931686 1 22.97403903 -14 0.216282064 2.188402262 0.72138842 0.211257596 0.142388296 240.672992 2.406103041 125.0028395 0.277669671 1.00E-14 14 -1.467013842 EET(ph)PGQRPAVTETHQLAELNEK ddPTM_HeLa_A486_30min_R1 1 EETPGQRPAVTETHQLAELNEK 22 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1;I3L1C0 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EET(0.999)PGQRPAVT(0.001)ETHQLAELNEK 177.12 8.92E-15 320250000 303520 277840 108820 97924 205920 282600 303670 278480 194030 317950 TRUE FALSE FALSE 282244.8154 255822.9465 150958.0183 227972.0208 180091.5935 247735.6853 227688.5541 215076.1832 210848.6766 238333.2505 1.184244392 1.073383365 0.633390507 0.956526294 0.755629326 1.039450789 0.955336923 0.902417865 0.88468007 1 17.86262071 -4.536625132 24.99855689 0.889947652 1.156529258 0.428374553 0.113130696 169.4042636 308070.6051 0.027973379 0.074085574 2.91E-05 4.536625132 0.266581606 EETGDEEDGS(ph)PIALHR ddPTM_HeLa_A486_30min_R1 2 EETGDEEDGSPIALHR 16 0 P79522-2 P79522-2 1 0 EETGDEEDGS(1)PIALHR;EETGDEEDGS(1)PIALHR ; 186.05 1.92E-17 0 348660 372260 220130 87440 261250 281390 265100 243955 303330 355400 TRUE FALSE FALSE 324220.7345 342760.7619 305370.2313 203564.739 228481.5889 246674.9628 198769.1761 188411.772 329622.8886 266405.5267 1.217019551 1.286612804 1.146260872 0.764116051 0.857645829 0.925937858 0.746115062 0.707236724 1.237297487 1 18.02326449 -5.103669923 4.506444502 0.874003294 1.245480386 0.518070849 0.145164319 0.162860173 5.419910394 0.039030283 0.07124509 7.88E-06 5.103669923 0.371477092 EETNGPSNQKPVKS(ph)PDNSIK ddPTM_HeLa_A485_30min_R1 2 EETNGPSNQKPVKSPDNSIK 20 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EETNGPSNQKPVKS(1)PDNSIK;EETNGPSNQKPVKS(0.999)PDNSIK ; 166.49 9.12E-14 1353990000 1688220 958190 450000 2777300 892540 1185760 2132100 1568820 844520 3298200 TRUE FALSE FALSE 2063758.715 1070241.985 616473.7261 2929016.867 803675.5837 1247844.56 1676559.417 1184064.435 1014007.418 2476019.439 0.833498591 0.432242966 0.248977741 1.182953906 0.324583713 0.503972037 0.677118843 0.4782129 0.409531283 1 21.23959121 -10.56704554 2.929827424 1.023519682 0.562392295 0.200321045 0.260258249 99997634.62 108199777.3 18449712.26 0.062629909 2.71E-11 10.56704554 -0.461127387 EETNGPSNQKPVKS(ph)PDNSIK ddPTM_HeLa_A486_30min_R1 2 EETNGPSNQKPVKSPDNSIK 20 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EETNGPSNQKPVKS(1)PDNSIK;EET(0.001)NGPS(0.018)NQKPVKS(0.98)PDNSIK ; 103.53 3.34E-05 1260800000 1035690 791340 189585 458680 398710 1073810 1309700 1065940 650570 2105120 TRUE FALSE FALSE 963093.4793 728631.3364 262997.3893 1067830.22 348700.074 941334.2399 981999.2074 823248.7313 706961.9314 1577984.25 0.610331491 0.461748168 0.166666676 0.676705246 0.220978171 0.596542228 0.622312426 0.521709093 0.448015835 1 20.58965138 -14 0.253989836 4.261567187 0.432920298 0.487509645 0.160191259 156.4381682 1.547864683 265.1417696 0.219812278 1.00E-14 14 -3.828646889 EETPGT(ph)PK ddPTM_HeLa_A485_30min_R1 1 EETPGTPK 8 0 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 EET(0.051)PGT(0.949)PK 86.879 0.021763 491790000 1570300 998560 474570 1773200 683060 969090 1265800 1386900 795090 3574400 TRUE FALSE FALSE 1919607.818 1115332.906 650133.1915 1870065.426 615052.148 1019830.054 995351.4894 1046760.6 954657.27 2683367.862 0.71537259 0.415646666 0.242282544 0.696909825 0.229209031 0.380055999 0.37093367 0.390092099 0.355768318 1 21.35561342 -10.15019943 4.890678921 1.000037867 0.415115943 0.554585022 0.155346225 6.66E-05 1.16E-05 0.144772172 0.035109966 7.08E-11 10.15019943 -0.584921924 EEVGAGYNS(ph)EDEYEAAAAR ddPTM_HeLa_A485_30min_R1 1 EEVGAGYNSEDEYEAAAAR 19 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 EEVGAGYNS(1)EDEYEAAAAR 336.49 4.32E-102 271930000 91884 140910 90098 84486 77465 114280 116690 126140 84830 98239 TRUE FALSE FALSE 112323.2788 157388.1987 123428.9995 89101.25625 69752.3126 120263.5241 91758.22823 95203.96722 101854.6029 73749.82525 1.523031118 2.134082328 1.673617518 1.20815549 0.94579631 1.630695716 1.244182314 1.290904309 1.381082634 1 16.17035201 -5.140969957 4.201930257 1.259847929 1.842698663 0.541305124 0.226824365 0.166214009 4.887251399 0.060721275 0.110586758 7.23E-06 5.140969957 0.582850734 EEVVEQGELNATEEVWIPGEGHPES(ph)PEPK ddPTM_HeLa_A485_30min_R1 2 EEVVEQGELNATEEVWIPGEGHPESPEPK 29 0 P48681 P48681 NES Nestin 1 0 EEVVEQGELNATEEVWIPGEGHPES(1)PEPK;EEVVEQGELNATEEVWIPGEGHPES(1)PEPK ; 170.48 2.32E-14 255110000 132861 109599 69958 192376 116134 133814 169148 157227 88783 231750 TRUE FALSE FALSE 162415.4711 122415.6497 95838.3754 202885.0138 104571.2912 140820.2941 133008.148 118666.8317 106600.9337 173978.99 0.933534969 0.703623177 0.550861776 1.166146635 0.601057008 0.809409769 0.764506955 0.682075644 0.612723029 1 17.40855357 EEVVEQGELNATEEVWIPGEGHPES(ph)PEPK ddPTM_HeLa_A486_30min_R1 4 EEVVEQGELNATEEVWIPGEGHPESPEPK 29 0 P48681 P48681 NES Nestin 1 0 EEVVEQGELNATEEVWIPGEGHPES(1)PEPK;EEVVEQGELNATEEVWIPGEGHPES(1)PEPK;EEVVEQGELNATEEVWIPGEGHPES(1)PEPK;EEVVEQGELNATEEVWIPGEGHPES(1)PEPK ;;; 206.53 6.57E-29 324032000 190194 171092 96486 117634 153651 196504 212559 199581 151098 297294 TRUE FALSE FALSE 176862.3828 157534.0468 133847.9632 273857.8969 134378.6588 172261.3344 159374.49 154140.7631 164195.2963 222849.6473 0.793639949 0.706907319 0.600620036 1.22889087 0.603001443 0.772993525 0.715165996 0.691680534 0.736798547 1 17.76571115 -10.41580702 2.858281745 1.00509621 0.760833951 0.154460393 0.16770048 26882310.22 30887059.12 1117483.156 0.041890266 3.84E-11 10.41580702 -0.24426226 EEVVGGDDS(ph)DGLR ddPTM_HeLa_A485_30min_R1 3 EEVVGGDDSDGLR 13 0 P25490 P25490 YY1 Transcriptional repressor protein YY1 1 0 EEVVGGDDS(1)DGLR;EEVVGGDDS(1)DGLR;EEVVGGDDS(1)DGLR ;; 196.67 7.31E-19 583080000 444110 536900 419950 402079 401641 432898 460613 473508 332499 465574 TRUE FALSE FALSE 542900.7373 599685.7846 575306.9806 424043.5577 361652.2118 455563.8699 362199.2697 357379.4206 399228.4994 349514.9701 1.553297523 1.715765664 1.646015278 1.213234322 1.034725957 1.303417332 1.036291148 1.022501041 1.142235766 1 18.41499472 -5.328777171 3.562863856 1.100609112 1.651830382 0.878899365 0.091081609 0.074265373 1.858680946 0.026255106 0.041943921 4.69E-06 5.328777171 0.55122127 EEVVGGDDS(ph)DGLR ddPTM_HeLa_A486_30min_R1 1 EEVVGGDDSDGLR 13 0 P25490 P25490 YY1 Transcriptional repressor protein YY1 1 0 EEVVGGDDS(1)DGLR 196.33 1.68E-18 248480000 252340 268800 169820 46404 165290 197130 202920 169660 229750 256310 TRUE FALSE FALSE 234652.2691 247499.309 235578.8519 108030.8571 144557.7869 172810.1049 152147.2697 131032.1217 249664.915 192128.3077 1.221331057 1.288198038 1.226153786 0.562284956 0.752402333 0.899451554 0.791904491 0.682003205 1.299469703 1 17.55171057 -5.155883496 8.08214314 0.837381676 1.254063234 0.471555535 0.188535432 0.243419949 16.77476265 0.050178041 0.087305654 6.98E-06 5.155883496 0.416681558 EEYEGPNKK(ac)PR ddPTM_HeLa_A485_30min_R1 2 EEYEGPNKKPR 11 2 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; EEYEGPNK(0.005)K(0.995)PR;EEYEGPNK(0.066)K(0.934)PR 151.98 0.00068245 356300000 308320 308390 253950 358170 430890 367680 508780 484110 362890 577200 FALSE TRUE FALSE 376904.7203 344453.5279 347896.6727 377735.9202 387989.0787 386931.1563 400074.9966 365381.2634 435718.6944 433314.6626 0.869817601 0.794927007 0.802873068 0.871735837 0.895397992 0.892956527 0.923289773 0.843223862 1.005548005 1 18.72505553 -7.017495335 0.300020936 1.014310378 0.796888115 0.629120849 0.041374407 1.11398505 0.314911117 0.06918723 0.088142541 9.61E-08 7.017495335 -0.217422263 EEYEGPNKK(ac)PR ddPTM_HeLa_A486_30min_R1 2 EEYEGPNKKPR 11 2 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; EEYEGPNK(0.004)K(0.996)PR;EEYEGPNK(0.031)K(0.969)PR 153.34 0.00048378 560100000 497200 518260 345170 193245 550220 533010 603120 618640 404470 658420 FALSE TRUE FALSE 462348.8475 477191.1901 478829.068 449884.1261 481206.277 467252.6454 452212.9968 477789.1768 439529.7853 493547.3464 0.936787222 0.966860006 0.970178589 0.911531851 0.974995166 0.946723043 0.916250488 0.968071615 0.890552423 1 18.91282896 EFAFPPPVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 EFAFPPPVSPR 11 0 Q13191 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 EFAFPPPVS(1)PR 62.924 0.02416 26206000 36069 47162 51701 28021 89451 55355 55836 65749 48230 36072 TRUE FALSE FALSE 44092.42461 52677.18565 70827.35136 29551.71628 80544.94436 58253.3022 43906.18246 49623.95466 57909.31861 27079.91426 1.628233539 1.945249352 2.61549393 1.091278059 2.974342666 2.151162727 1.621356037 1.832500435 2.138460191 1 14.72493555 -9.178624095 9.778709417 0.999968791 2.00659221 0.263832023 0.5009017 0 0 0.467434207 0.113369448 6.63E-10 9.178624095 1.006623418 EFAPS(ph)DEELDSYR ddPTM_HeLa_A485_30min_R1 2 EFAPSDEELDSYR 13 0 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 EFAPS(1)DEELDSYR;EFAPS(1)DEELDSYR ; 179.56 4.85E-17 773030000 343369 421000 442180 350320 493370 379140 518900 538120 410540 486550 TRUE FALSE FALSE 419750.2494 470232.2878 605760.7826 369457.0945 444248.3505 398991.1841 408032.776 406145.2263 492931.6123 365262.0393 1.149175672 1.287383405 1.658427971 1.011485057 1.216245606 1.092342322 1.117096035 1.111928376 1.34952872 1 18.4785723 -5.299582185 24.99979506 1.134728787 1.357235017 0.339705637 0.150876616 632.5122833 414563.7516 0.042000742 0.062298821 5.02E-06 5.299582185 0.22250623 EFAPS(ph)DEELDSYR ddPTM_HeLa_A486_30min_R1 1 EFAPSDEELDSYR 13 0 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 EFAPS(1)DEELDSYR 207.31 2.77E-22 0 272420 330500 284220 93437 411120 265250 311900 361110 290520 306890 TRUE FALSE FALSE 253324.7648 304309.9763 394277.5957 217526.058 359553.4961 232526.1519 233859.3211 278893.136 315702.5075 230042.7465 1.101207357 1.322840998 1.713931874 0.945589728 1.562985582 1.010795408 1.016590719 1.212353531 1.372364538 1 17.81154244 -6.284541424 24.83434484 1.129078565 1.329001674 0.172775147 0.22611528 1419.758589 1526213.548 0.078649536 0.06940796 5.19E-07 6.284541424 0.19992311 EFDEDS(ph)DEKEEEEDTYEK ddPTM_HeLa_A485_30min_R1 3 EFDEDSDEKEEEEDTYEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK ;; 336.87 4.63E-102 3671200000 3518303 2189686 1076411 6237820 2102134 2038342 3837870 1922278 1233730 6543220 TRUE FALSE FALSE 4300937.364 2445750.73 1474620.222 6578576.312 1892838.158 2145066.435 3017877.722 1450836.306 1481328.295 4912115.673 0.875577379 0.497901697 0.30020063 1.33925517 0.385340713 0.436688909 0.614374319 0.295358742 0.301566248 1 22.2279131 -4.254097756 23.04231534 0.55885243 0.875577828 0.069777761 0.325268106 835.9832317 2623598.87 0.080037112 0.763989246 5.57E-05 4.254097756 0.316725398 EFDEDS(ph)DEKEEEEDTYEK ddPTM_HeLa_A486_30min_R1 2 EFDEDSDEKEEEEDTYEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 EFDEDS(1)DEKEEEEDTYEK;EFDEDS(1)DEKEEEEDTYEK ; 256.76 4.94E-58 4063100000 4947700 3004000 685760 2596100 1168970 4185900 4229800 3260600 2342400 12158100 TRUE FALSE FALSE 4600891.78 2765952.1 951304.6373 6043852 1022346.882 3669486.217 3171459.302 2518232.558 2545441.118 9113632.624 0.504836213 0.303496116 0.104382597 0.663166078 0.112177759 0.402637057 0.34799069 0.276314908 0.279300387 1 23.11959479 -10.48612511 3.985530634 1.006004621 0.329207959 0.614149303 0.158655609 208666136.5 81704.75224 11498883.11 0.035958582 3.26E-11 10.48612511 -0.676796662 EFDPTITDASLS(ph)LPSRR ddPTM_HeLa_A485_30min_R1 1 EFDPTITDASLSLPSRR 17 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 EFDPTITDAS(0.001)LS(0.999)LPSRR 192.25 2.51E-18 143910000 161500 143010 179600 144820 217620 149460 191710 154660 180260 199480 TRUE FALSE FALSE 197425.1178 159733.7755 246041.5138 152731.1499 195952.9887 157285.4945 150749.5924 116729.3925 216436.5286 149753.3072 1.318335612 1.066646063 1.642978833 1.019884988 1.30850525 1.050297302 1.006652843 0.779477894 1.445287137 1 17.19222834 -6.271484865 20.45337769 1.039454524 1.266586778 0.191210777 0.219540951 97.11902556 197738.1824 0.073393626 0.065812439 5.35E-07 6.271484865 0.227132254 EFDPTITDASLS(ph)LPSRR ddPTM_HeLa_A486_30min_R1 1 EFDPTITDASLSLPSRR 17 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 EFDPTITDAS(0.038)LS(0.949)LPS(0.013)RR 123.43 1.24E-05 151480000 69280 97848 86873 29054 112360 90578 99671 106430 84466 98212 TRUE FALSE FALSE 64423.82976 90094.16812 120512.5521 67639.18031 98266.76108 79403.40729 74732.26159 82198.21235 91787.58089 73619.07595 0.875096963 1.223788359 1.636974529 0.918772471 1.334800251 1.078571094 1.015120886 1.11653415 1.246790722 1 16.16779202 -6.33586316 24.99969771 1.09391888 1.208215578 0.060162523 0.208324869 426.4317349 143239.8554 0.073591944 0.064902001 4.61E-07 6.33586316 0.114296698 EFDRHS(ph)GSDR ddPTM_HeLa_A485_30min_R1 2 EFDRHSGSDR 10 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 EFDRHS(0.95)GS(0.05)DR;EFDRHS(0.983)GS(0.017)DR ; 124.07 5.93E-05 1949290000 843430 1196360 1055210 769520 1387720 1044740 1121490 1358440 1019700 1083290 TRUE FALSE FALSE 1031048.094 1336263.895 1445576.09 811556.9291 1249553.724 1099440.971 881874.4998 1025280.46 1224344.437 813245.7395 1.267818623 1.643124372 1.777539088 0.99792337 1.536502023 1.351917283 1.084388712 1.260726506 1.505503659 1 19.63333183 -5.253981002 24.99501707 1.268517465 1.570857047 0.31093599 0.213071116 732.0592787 2453320.416 0.057269341 0.096715408 5.57E-06 5.253981002 0.302339582 EFDRHS(ph)GSDR ddPTM_HeLa_A486_30min_R1 4 EFDRHSGSDR 10 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 EFDRHS(0.921)GS(0.079)DR;EFDRHS(0.789)GS(0.211)DR;EFDRHS(0.754)GS(0.246)DR;EFDRHS(0.821)GS(0.179)DR ;;; 100.11 0.00081734 1111681000 972279 1030776 1003404 212190.4 1130275 919200 1105154 1029510 921038 823323 TRUE FALSE FALSE 904127.263 949093.5557 1391948.901 493989.9747 988505.3701 805798.4497 828632.7801 795113.047 1000874.315 617157.5619 1.464986122 1.537846434 2.255419016 0.800427646 1.601706649 1.305660822 1.342660013 1.288346925 1.621748444 1 19.23527933 -5.26270909 24.99999883 1.309167763 1.731260085 0.333678332 0.303695231 142.3684667 2803189.86 0.081459021 0.128772724 5.46E-06 5.26270909 0.422092322 EFEDDLVKESSSCGKDT(ph)PSK ddPTM_HeLa_A486_30min_R1 1 EFEDDLVKESSSCGKDTPSK 20 2 K7EPP5;O43148;O43148-2 K7EPP5 RNMT mRNA cap guanine-N7 methyltransferase 1 0 EFEDDLVKES(0.049)S(0.049)S(0.049)CGKDT(0.839)PS(0.013)K 64.152 0.011432 158860000 165940 121900 45725 176950 159290 180300 370960 321630 108610 365370 TRUE FALSE FALSE 154308.4629 112240.2 63430.94456 411948.5426 139310.3629 158056.4192 278141.8844 248401.8701 118024.4022 273878.9738 0.563418435 0.409816783 0.231602097 1.504126209 0.508656656 0.577103152 1.015564943 0.906976781 0.430936339 1 18.06317899 EFEDRDR ddPTM_HeLa_A485_30min_R1 1 EFEDRDR 7 1 Q13951-2;J3KS23;A0A494C0A9;Q13951 Q13951-2 CBFB Core-binding factor subunit beta 0 0 110.81 0.0037804 171460000 115270 143760 129440 110280 156990 119880 144320 157980 133260 155180 FALSE FALSE TRUE 140911.4138 160571.4815 177325.2424 116304.3172 141359.5244 126156.7314 113484.853 119235.1573 160004.0597 116496.4819 1.20957656 1.378337602 1.522151052 0.998350468 1.213423119 1.082923101 0.974148328 1.023508653 1.373466881 1 16.82992686 -5.268364488 24.99890457 1.0954777 1.370853327 0.470285047 0.133698925 465.5387858 1680545.069 0.037416728 0.056864355 5.39E-06 5.268364488 0.275375627 EFEENGLEKDLDEEGS(ph)EK ddPTM_HeLa_A485_30min_R1 2 EFEENGLEKDLDEEGSEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 EFEENGLEKDLDEEGS(1)EK;EFEENGLEKDLDEEGS(1)EK ; 208.97 7.38E-26 324550000 437680 345350 124246 738210 220326 329650 543340 441570 176567 800440 TRUE FALSE FALSE 535040.406 385735.6784 170209.7657 778536.5431 198389.5698 346909.9643 427250.9703 333274.2651 212002.3773 600905.039 0.890390946 0.641924519 0.28325568 1.295606614 0.330151283 0.577312457 0.711012461 0.55462052 0.352805125 1 19.19677749 -10.30305192 5.240176841 1.000083179 0.626621246 0.13388973 0.285106476 0.000265675 3.53E-05 0.264710318 0.064187449 4.98E-11 10.30305192 -0.373461933 EFEENGLEKDLDEEGS(ph)EK ddPTM_HeLa_A486_30min_R1 2 EFEENGLEKDLDEEGSEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 EFEENGLEKDLDEEGS(1)EK;EFEENGLEKDLDEEGS(1)EK ; 145.25 2.40E-08 306540000 354045 238181 63622 159474 97074 240608 306281 237995 162139 833111 TRUE FALSE FALSE 329228.2738 219306.6701 88258.14226 371263.5314 84898.07374 210924.2313 229646.2543 183808.7339 176193.3391 624494.583 0.527191561 0.351174656 0.141327314 0.594502405 0.135946854 0.337751899 0.367731379 0.294331991 0.282137498 1 19.25232953 -10.74016097 2.675658903 1.134563691 0.332913326 0.678658172 0.136861157 21014805.53 16782086.65 18773052.57 0.032721376 1.82E-11 10.74016097 -0.801650365 EFESAIVEAARPVAGFLS(ph)PFDR ddPTM_HeLa_A485_30min_R1 1 EFESAIVEAARPVAGFLSPFDR 22 1 A0A499FI31 A0A499FI31 1 0 EFES(0.001)AIVEAARPVAGFLS(0.999)PFDR 52.329 0.016856 10327000 6297.9 8966.3 10254 7437 9133 8164 7823.6 9679.7 4642.9 8552.6 TRUE FALSE FALSE 7698.846128 10014.83079 14047.3813 7843.264479 8223.686452 8591.454416 6152.023947 7305.738398 5574.687443 6420.594219 1.199086232 1.559798119 2.187863121 1.22157922 1.280829495 1.338108923 0.958170496 1.137860165 0.868251014 1 12.64849111 -6.151631098 1.050210728 0.9956514 1.608355399 0.457434725 0.264283039 0.478943098 1.118122478 0.144004751 0.145131139 7.05E-07 6.151631098 0.612703999 EFFVTS(ph)APWSVIDQQAIHPELNGATYR ddPTM_HeLa_A486_30min_R1 1 EFFVTSAPWSVIDQQAIHPELNGATYR 27 0 P56545;P56545-3;P56545-2 P56545 CTBP2 C-terminal-binding protein 2 1 0 EFFVT(0.182)S(0.763)APWS(0.055)VIDQQAIHPELNGATYR 66.902 0.00057868 0 11628 11951 6826 6193.6 12028 10920 13743 11868 8147.6 15943 TRUE FALSE FALSE 10812.93725 11003.95924 9469.210007 14419.01381 10519.33608 9572.801426 10304.35604 9165.915477 8853.840528 11950.76903 0.904790078 0.920774153 0.79235152 1.206534389 0.880222524 0.8010197 0.86223372 0.766972858 0.74085948 1 13.54481584 -5.995285927 24.99842635 0.823539203 0.954577041 0.192191721 0.116875787 208.6847407 1106628 0.036047155 0.040726608 1.01E-06 5.995285927 0.131037838 EFGYDS(ph)PHDLDS(ph)D ddPTM_HeLa_A485_30min_R1 3 EFGYDSPHDLDSD 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 2 0 EFGYDS(1)PHDLDS(1)D;EFGYDS(1)PHDLDS(1)D;EFGYDS(1)PHDLDS(1)D ;; 220.48 4.96E-27 2041770000 1461760 1866380 1585330 1652030 2175220 1469450 2103570 1962860 1609700 2029700 TRUE FALSE FALSE 1786923.469 2084636.906 2171809.538 1742276.216 1958647.459 1546388.13 1654125.085 1481465.507 1932752.025 1523733.144 1.172727309 1.368111545 1.425321453 1.14342608 1.285426826 1.01486808 1.085574001 0.972260473 1.268432096 1 20.53917883 -5.987537802 1.604295636 1.067783861 1.309446654 0.451121034 0.111678159 0.330591536 1.734735788 0.042647551 0.047811925 1.03E-06 5.987537802 0.241662793 EFGYDS(ph)PHDLDS(ph)D ddPTM_HeLa_A486_30min_R1 3 EFGYDSPHDLDSD 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 2 0 EFGYDS(1)PHDLDS(1)D;EFGYDS(1)PHDLDS(1)D;EFGYDS(1)PHDLDS(1)D ;; 285.38 9.09E-49 1809780000 1256230 1547780 1097460 739350 1503080 1387790 1554760 1560580 1128790 1404850 TRUE FALSE FALSE 1168174.764 1425128.276 1522425.903 1721244.165 1314549.691 1216578.58 1165742.603 1205270.001 1226634.426 1053066.416 1.109307776 1.353312815 1.445707393 1.63450675 1.248306537 1.155272413 1.106998178 1.1445337 1.164821523 1 20.006165 -5.996088363 24.9930776 1.131665992 1.394396125 0.498468073 0.127677613 104.2673669 666197.905 0.041738808 0.047123037 1.01E-06 5.996088363 0.262730133 EFGYDSPHDLDS(ph)D ddPTM_HeLa_A486_30min_R1 1 EFGYDSPHDLDSD 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 EFGYDSPHDLDS(1)D 133.15 9.12E-05 0 170900 201330 176620 59397 246350 207260 224450 248410 190570 200540 TRUE FALSE FALSE 158920.7925 185375.8776 245011.994 138279.2178 215450.4859 181690.3685 168290.236 191852.4658 207088.761 150323.4787 1.057192089 1.233179801 1.629898378 0.919877713 1.433245743 1.208662612 1.119520633 1.276264143 1.377620867 1 17.19771083 -5.27833705 24.96497365 1.21013622 1.299399156 0.061140746 0.197762864 3019.642904 4461275.23 0.054710409 0.081397745 5.27E-06 5.27833705 0.089262936 EFHLNES(ph)GDPSSK ddPTM_HeLa_A485_30min_R1 1 EFHLNESGDPSSK 13 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 1 0 EFHLNES(1)GDPSSK 91.475 0.0010987 79953000 113210 115770 84438 146380 126790 115630 145510 144440 98208 174000 TRUE FALSE FALSE 138393.1739 129308.2944 115675.13 154376.3687 114166.3424 121684.208 114420.5998 109015.8635 117917.4448 130625.0022 1.059469256 0.98991994 0.885551219 1.18182864 0.874000693 0.93155373 0.87594716 0.83457119 0.902717265 1 16.99507154 EFHLNESGDPSSK ddPTM_HeLa_A485_30min_R1 3 EFHLNESGDPSSK 13 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ;; ;; 165.64 5.98E-07 505498000 561378 663313 587284 616754 805596 765094 921800 995780 631064 920301 FALSE FALSE TRUE 686254.5994 740881.6853 804544.7905 650445.7093 725388.0336 805153.1388 724849.8996 751563.3937 757712.7563 690886.8976 0.993295142 1.072363201 1.164510129 0.941464821 1.049937459 1.165390662 1.049158556 1.087824065 1.096724745 1 19.39809003 -6.040702611 24.94452579 1.086089154 1.046448387 0.063210855 0.066058335 1430.71744 876811.0924 0.021728465 0.021731753 9.11E-07 6.040702611 -0.039640768 EFHLNESGDPSSK ddPTM_HeLa_A486_30min_R1 1 EFHLNESGDPSSK 13 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 114.31 0.00079144 322330000 325210 370980 235960 105380 467620 376130 438840 400330 326820 458910 FALSE FALSE TRUE 302414.4584 341582.1937 327330.0312 245329.9656 408966.7392 329726.9048 329037.5904 309183.5981 355149.0207 343995.949 0.87912215 0.992983187 0.951551994 0.713176903 1.1888708 0.958519732 0.956515887 0.898800114 1.032422102 1 18.39203205 -5.758172357 24.99887573 0.995961064 0.896788479 0.260733596 0.098608199 150.8160709 1154017.665 0.030026995 0.037153611 1.75E-06 5.758172357 -0.099172585 EFHSAGRT(ph)PPMMPGSQRPLSAR ddPTM_HeLa_A485_30min_R1 1 EFHSAGRTPPMMPGSQRPLSAR 22 2 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7;H0YA04 Q96RT1-6 ERBB2IP Protein LAP2 1 0 EFHS(0.101)AGRT(0.899)PPMMPGSQRPLSAR 124.17 2.77E-06 224190000 90768 128440 81725 85375 85343 118920 120500 136250 103910 180280 TRUE FALSE FALSE 110959.0285 143459.9407 111958.4784 90038.82007 76845.95126 125146.4673 94754.19061 102834.4739 124763.7839 135339.5138 0.819856857 1.060000414 0.827241618 0.665281096 0.567801295 0.924685362 0.700122144 0.759825944 0.921857781 1 17.04622359 -4.986854244 23.62495941 0.771679932 0.940851918 0.145933128 0.136043565 182.1744659 327386.0075 0.034669183 0.072086552 1.03E-05 4.986854244 0.169171985 EFHSAGRT(ph)PPMMPGSQRPLSAR ddPTM_HeLa_A486_30min_R1 1 EFHSAGRTPPMMPGSQRPLSAR 22 2 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7;H0YA04 Q96RT1-6 ERBB2IP Protein LAP2 1 0 EFHS(0.242)AGRT(0.758)PPMMPGSQRPLSAR 71.882 0.0063597 187310000 81143 82805 90143 22265 154300 101180 82534 94606 90979 123910 TRUE FALSE FALSE 75455.29472 76243.23023 125048.7837 51834.04521 134946.2552 88697.44032 61883.12024 73066.27903 98865.13297 92882.12948 0.812376882 0.820860058 1.346316933 0.558062627 1.452876414 0.95494624 0.666254322 0.786655942 1.064415012 1 16.50311343 -6.534949411 24.97826728 0.854273723 1.005227061 0.03970865 0.263284946 681.9338535 1411137.306 0.097583887 0.075639833 2.92E-07 6.534949411 0.150953337 EFITGDVEPT(ph)DAESEWHSENEEEEKLAGDMK ddPTM_HeLa_A485_30min_R1 1 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPT(0.35)DAES(0.325)EWHS(0.325)ENEEEEKLAGDMK 48.088 0.034312 181870000 133460 87465 57421 113350 78492 242780 191830 287120 125940 99532 TRUE FALSE FALSE 163147.7166 97693.27091 78663.41739 119542.0235 70677.06088 255491.5854 150843.9534 216703.3698 151215.0028 74720.50415 2.183439719 1.307449301 1.052768825 1.599855687 0.94588576 3.419296862 2.018775905 2.900186131 2.023741736 1 16.18921657 -6.237129138 24.99887449 2.375310474 1.401570658 0.282599184 0.670552463 873.6662075 898415.0457 0.207473934 0.207381375 5.79E-07 6.237129138 -0.973739817 EFITGDVEPTDAES(ph)EWHSENEEEEK ddPTM_HeLa_A485_30min_R1 4 EFITGDVEPTDAESEWHSENEEEEK 25 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEK;EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEK;EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEK;EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEK ;;; 127.05 4.57E-06 2284500000 2115020 1911280 1069240 1770620 750870 2947630 1714490 2439300 1673580 977390 TRUE FALSE FALSE 2585498.902 2134787.57 1464796.371 1867344.487 676110.7463 3101963.349 1348175.205 1841057.85 2009452.155 733744.6605 3.523703873 2.909442051 1.996329854 2.544951381 0.921452356 4.227578769 1.837390141 2.509126062 2.738625932 1 19.48491857 -4.508894205 3.503255163 2.299981798 3.46729275 0.176524395 0.890560445 0.416056418 10.30880964 0.218087414 0.919915217 3.10E-05 4.508894205 1.167310952 EFITGDVEPTDAES(ph)EWHSENEEEEK ddPTM_HeLa_A486_30min_R1 4 EFITGDVEPTDAESEWHSENEEEEK 25 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPT(0.005)DAES(0.498)EWHS(0.498)ENEEEEK;EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEK;EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEK;EFITGDVEPT(0.062)DAES(0.469)EWHS(0.469)ENEEEEK ;;; 133.95 2.38E-06 1764750000 888972 1251270 616032 161644.8 721735 1229529 741352 999657 737317 865194 TRUE FALSE FALSE 826659.6535 1152114.808 854576.0883 376317.2635 631208.2664 1077842.213 555857.8884 772056.9235 801228.2312 648543.7909 1.274639685 1.776464171 1.317684481 0.580249582 0.973270079 1.661942074 0.857086131 1.190446866 1.23542657 1 19.30684447 -5.001896509 24.99310261 1.079843963 1.530932637 0.293312126 0.286041539 91.17547541 1201622.538 0.075928918 0.154364071 9.96E-06 5.001896509 0.451088674 EFITGDVEPTDAES(ph)EWHSENEEEEKLAGDMK ddPTM_HeLa_A485_30min_R1 2 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEKLAGDMK;EFITGDVEPT(0.005)DAES(0.878)EWHS(0.117)ENEEEEKLAGDMK ; 162.24 1.77E-14 1218725000 39462 24902 19387 34623 21297 70359 52483 83257 41284 28282 TRUE FALSE FALSE 48240.18576 27814.07228 26559.05806 36514.36682 19176.5959 74042.88844 41269.5783 62838.09021 49569.32012 21231.81789 2.272070437 1.310018408 1.250908339 1.71979465 0.903200847 3.487355102 1.94376094 2.959618933 2.3346715 1 14.37394028 -6.242986668 24.98999488 2.44247508 1.480483336 0.269971812 0.69276136 954.5936485 1292780.464 0.213202067 0.212821845 5.71E-07 6.242986668 -0.961991744 EFITGDVEPTDAES(ph)EWHSENEEEEKLAGDMK ddPTM_HeLa_A486_30min_R1 4 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFIT(0.001)GDVEPT(0.013)DAES(0.493)EWHS(0.493)ENEEEEKLAGDMK;EFITGDVEPT(0.006)DAES(0.497)EWHS(0.497)ENEEEEKLAGDMK;EFITGDVEPT(0.082)DAES(0.459)EWHS(0.459)ENEEEEKLAGDMK;EFITGDVEPT(0.003)DAES(0.499)EWHS(0.499)ENEEEEKLAGDMK ;;; 112.72 4.47E-05 2186027000 364738 552754 276009.8 61178.5 594766 659680 452763 690579 323407 319949 TRUE FALSE FALSE 339171.7497 508951.7599 382888.1864 142426.6398 520164.9023 578295.3887 339476.9086 533349.2369 351440.1792 239831.6879 1.414207408 2.122120577 1.59648706 0.593860807 2.168874793 2.411255134 1.415479796 2.223848073 1.465361739 1 17.87166276 EFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_A485_30min_R1 6 EFITGDVEPTDAESEWHSENEEEEK 25 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAES(0.477)EWHS(0.523)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK ;;;;; 401.18 3.90E-189 22695200000 6087895 6228539 4274240 6620260 4611321 5562690 8070007 6663611 4449314 8229289 TRUE FALSE FALSE 7442126.24 6956912.455 5855459.242 6981908.04 4152201.69 5853943.847 6345784.079 5029349.954 5342250.508 6177878.701 1.204641043 1.126100526 0.947810652 1.130146508 0.672107999 0.947565359 1.027178484 0.81409011 0.864738653 1 22.55868011 -4.644675165 0.963716685 0.898672777 1.275565889 0.422913614 0.116266775 1.128879431 1.265971672 0.040938304 0.392134918 2.27E-05 4.644675165 0.376893112 EFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_A486_30min_R1 4 EFITGDVEPTDAESEWHSENEEEEK 25 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK;EFITGDVEPTDAESEWHS(1)ENEEEEK ;;; 349.43 5.31E-142 10658860000 3424990 3112650 1348780 600689 2015020 3100640 3509930 2855360 2569770 4662640 TRUE FALSE FALSE 3184915.888 2865992.278 1871063.738 1398434.349 1762277.402 2718114.562 2631708.39 2205256.86 2792519.733 3495084.595 0.911255737 0.820006555 0.535341474 0.400114593 0.504215951 0.777696358 0.752974161 0.630959509 0.798984876 1 21.73689594 -8.318600656 0.872507293 1.002074042 0.64944669 0.316287215 0.149314069 1.498565166 2.145092499 0.164052726 0.055727974 4.80E-09 8.318600656 -0.352627352 EFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_HeLa_A485_30min_R1 11 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFIT(0.003)GDVEPT(0.015)DAES(0.203)EWHS(0.779)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.044)EWHS(0.955)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.001)EWHS(0.999)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.054)EWHS(0.946)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK ;;;;;;;;;; 457.77 7.05E-284 32834580000 1486379 1064130 841463 2457507 1945015 1774852 3190127 3211086 1349124 3776758 TRUE FALSE FALSE 1817018.881 1188570.747 1152755.18 2591754.385 1751362.477 1867780.506 2508530.306 2423562.124 1619880.812 2835281.737 0.64086008 0.419207281 0.406575179 0.914108235 0.617703156 0.658763636 0.884755216 0.854787054 0.571329752 1 21.43506067 -4.314890302 0.141541847 1.062302195 5.27E-14 0.382900664 0.154597775 29.14965734 0.71340122 0.952263978 5.948618621 4.84E-05 4.314890302 -1.062302195 EFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_HeLa_A486_30min_R1 18 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.022)EWHS(0.978)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.197)EWHS(0.803)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPT(0.007)DAES(0.152)EWHS(0.841)ENEEEEKLAGDMK;EFITGDVEPT(0.126)DAES(0.118)EWHS(0.755)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPT(0.063)DAES(0.202)EWHS(0.735)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.039)EWHS(0.961)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.001)EWHS(0.999)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;EFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK ;;;;;;;;;;;;;;;;; 473.74 3.22E-285 23162045600 2412197.5 2561961.7 1280663.2 914553.6 2828406.1 3463879.4 4812375 4668468 2208994.4 4111781 TRUE FALSE FALSE 2243114.912 2358942.524 1776570.288 2129127 2473641.033 3036541.178 3608267.875 3605559.748 2400471.813 3082164.274 0.727772666 0.765352627 0.576403504 0.690789591 0.802566253 0.985197708 1.170692914 1.169814269 0.778826694 1 21.55551233 -6.168520153 2.492100321 1.04698437 0.689610111 0.661742543 0.11228387 0.175435352 2.132917212 0.042163009 0.041435097 6.78E-07 6.168520153 -0.357374259 EFLLIFR ddPTM_HeLa_A485_30min_R1 2 EFLLIFR 7 0 Q96C19;H0Y4Y4 Q96C19 EFHD2 EF-hand domain-containing protein D2 0 0 ; ; 124.89 0.0087365 22919000 30201 35883 37549 28404 44732 32688 37088 38151 33502 40760 FALSE FALSE TRUE 36919.10826 40079.20471 51439.93764 29955.6386 40278.32502 34399.49313 29163.84582 28794.40743 40225.5441 30599.28213 1.206535111 1.309808659 1.681083152 0.978965404 1.316316012 1.124192816 0.953089216 0.941015783 1.314591105 1 14.90121019 -5.811545031 1.252256564 1.057851628 1.36278648 0.288185745 0.186721068 0.563506599 1.861613937 0.076773979 0.105041577 1.54E-06 5.811545031 0.304934851 EFLLIFR ddPTM_HeLa_A486_30min_R1 1 EFLLIFR 7 0 Q96C19;H0Y4Y4 Q96C19 EFHD2 EF-hand domain-containing protein D2 0 0 105.2 0.025639 8733400 8610.1 9869.3 7956.3 3655.9 10767 7767.3 7948 8990.7 7613.2 8708.1 FALSE FALSE TRUE 8006.576453 9087.220725 11037.19244 8511.119959 9416.502462 6809.049498 5959.326335 6943.713876 8273.118306 6527.53508 1.226584975 1.392136636 1.690866813 1.30387962 1.442581671 1.043127216 0.91295202 1.06375742 1.267418437 1 12.67232259 -6.2627256 24.97795579 1.052404656 1.419724021 0.616684294 0.13934265 79.40434889 1541994.142 0.049305996 0.045892331 5.46E-07 6.2627256 0.367319365 EFNAEVHR ddPTM_HeLa_A485_30min_R1 2 EFNAEVHR 8 0 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 0 ; ; 174.92 5.27E-05 246725000 95951 116003 134400 126173 148196 106499 124480 101940 122757 174818 FALSE FALSE TRUE 117294.9689 129568.5418 184120.1529 133065.5115 133441.0859 112075.123 97883.83109 76939.05516 147393.2039 131239.0899 0.893750246 0.987270956 1.402936831 1.01391675 1.016778507 0.853976685 0.745843568 0.586251057 1.123089196 1 17.00183797 -6.139088217 2.405302744 0.825561052 1.089409409 0.225435748 0.183006545 0.394215131 4.467208196 0.068368111 0.068380476 7.26E-07 6.139088217 0.263848357 EFNAEVHR ddPTM_HeLa_A486_30min_R1 2 EFNAEVHR 8 0 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 0 ; ; 195.05 4.62E-12 87786000 149493 178078 153945 52778 223580 180605 161979 166628 170445 165964 FALSE FALSE TRUE 139014.3127 163966.4507 213556.6268 122869.8513 195536.5116 158323.7914 121450.141 128690.4419 185219.3098 124405.5342 1.117428687 1.317999652 1.716616775 0.987655831 1.571766987 1.272642672 0.976243877 1.034443063 1.488834971 1 16.92469114 -6.534515848 23.51414101 1.127278096 1.350054285 0.161187091 0.234169203 201.1955156 406531.5698 0.08702454 0.067481658 2.92E-07 6.534515848 0.222776189 EFNAEVHRK ddPTM_HeLa_A485_30min_R1 3 EFNAEVHRK 9 1 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 0 ;; ;; 153.05 4.22E-05 394323000 346939 492333 396248 353535 566375 514786 618410 636221 386846 469151 FALSE FALSE TRUE 424114.3836 549907.0616 542836.6245 372847.7219 509984.7163 541739.3989 486281.6516 480186.8022 464482.4438 352200.2898 1.204185221 1.561347556 1.541272509 1.05862412 1.4479963 1.538157164 1.380696341 1.363391275 1.318801992 1 18.42603657 -8.390574294 1.427818972 1.000146642 1.396236476 0.37535306 0.149181801 1.724554869 4.986022535 0.144164185 0.042241952 4.07E-09 8.390574294 0.396089833 EFNAEVHRK ddPTM_HeLa_A486_30min_R1 4 EFNAEVHRK 9 1 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 0 ;;; ;;; 150.35 9.54E-05 275904000 303737.9 291312.5 207564.5 110940.2 360803.8 282577.7 327756.6 325019.8 226211.2 366590.2 FALSE FALSE TRUE 282447.4417 268227.8366 287939.0332 258274.3922 315548.423 247716.1364 245748.432 251019.8867 245819.369 274793.6278 1.027852953 0.976106465 1.047837373 0.939884939 1.148310554 0.901462448 0.894301786 0.913485108 0.894559932 1 18.06798902 EFS(ph)GPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_A485_30min_R1 1 EFSGPSTPTGTLEFEGGEVSLEGGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 EFS(0.25)GPS(0.195)T(0.185)PT(0.185)GT(0.185)LEFEGGEVSLEGGK 81.373 0.0043474 268660000 88036 103450 84429 83311 109770 106240 100510 103970 88630 114470 TRUE FALSE FALSE 107619.3045 115547.5776 115662.8005 87862.06898 98840.91337 111802.5621 79035.21741 78471.19448 106417.228 85934.73566 1.252337645 1.344596882 1.3459377 1.022427873 1.150185808 1.301017118 0.919712114 0.913148727 1.238349396 1 16.39095378 -5.540028695 0.645509443 1.031882491 1.349932805 0.363701646 0.12991095 1.126568609 0.914347456 0.084259579 0.21393038 2.88E-06 5.540028695 0.318050314 EFS(ph)IPR ddPTM_HeLa_A485_30min_R1 7 EFSIPR 6 0 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR ;;;;;; 100.45 0.011964 2257429000 2037510 1341360 900479 1983960 1238910 1323020 1982750 1478730 1327410 3819390 TRUE FALSE FALSE 2490747.07 1498220.384 1233603.654 2092338.711 1115559.77 1392291.281 1559119.265 1116069.149 1593809.011 2867286.364 0.868677472 0.522522062 0.430233851 0.729727849 0.389064652 0.485578036 0.543761267 0.389242303 0.555859726 1 21.45125457 -8.05858323 22.68553505 1.000000001 0.535075399 0.473535917 0.143332174 7768.001062 3008044.268 0.13518413 0.034904392 8.74E-09 8.05858323 -0.464924602 EFS(ph)IPR ddPTM_HeLa_A486_30min_R1 7 EFSIPR 6 0 Q8NFJ5 Q8NFJ5 GPRC5A Retinoic acid-induced protein 3 1 0 EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR;EFS(1)IPR ;;;;;; 108.46 0.0094521 2198348000 1638280 1838950 1435570 717180 2078040 2377500 2248950 2022420 2068390 2846370 TRUE FALSE FALSE 1523445.032 1693224.905 1991461.15 1669631.284 1817392.846 2084188.223 1686238.923 1561959.115 2247679.711 2133620.425 0.71401877 0.793592377 0.933371806 0.782534355 0.851788268 0.976831773 0.790318139 0.732069817 1.053458096 1 21.02487211 -12.89047107 0.024766218 2.097547097 3.69E-14 0.305116004 0.09467525 2511.919075 5.653135807 325.0344699 174.5846913 1.29E-13 12.89047107 -2.097547097 EFS(ph)PFGSITSAK ddPTM_HeLa_A486_30min_R1 1 EFSPFGSITSAK 12 0 H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;H0YEU6 H0Y5F5 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 1 0 EFS(0.994)PFGS(0.006)ITSAK 78.486 0.0043799 0 70623 62067 36087 33060 71280 66202 74200 82056 54203 83280 TRUE FALSE FALSE 65672.6924 57148.58488 50060.85284 76965.35076 62339.39774 58034.67033 55634.37519 63373.64007 58901.35968 62426.14594 1.052006197 0.915459124 0.801921248 1.23290249 0.998610387 0.929653264 0.891203107 1.015177841 0.943536699 1 15.92986278 -6.240010102 21.8342353 0.952818362 0.997387869 0.040531093 0.106726443 694.6481341 707771.0553 0.036659069 0.036599921 5.75E-07 6.240010102 0.044569507 EFSGGS(ph)YSAK ddPTM_HeLa_A486_30min_R1 1 EFSGGSYSAK 10 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6;Q5VT25-4;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25;Q5VT25-2 H0Y7V8;A0A0A0MRJ1 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 0 EFSGGS(0.722)YS(0.278)AK 129.87 0.00014953 0 333740 323190 169680 145480 248750 332600 448550 511390 233570 335810 TRUE FALSE FALSE 310346.5494 297579.2474 235384.6402 338684.7922 217549.4555 291567.1936 336318.0457 394957.6606 253816.0357 251720.9902 1.232898969 1.182178916 0.935101359 1.345476958 0.86424837 1.158295116 1.336074697 1.569029504 1.008322887 1 17.941466 -6.593325053 6.669484884 1.273720835 1.108702665 0.05111435 0.20083457 0.450913666 34.09557986 0.074555966 0.057571157 2.55E-07 6.593325053 -0.16501817 EFT(ph)GSPPSSATKK ddPTM_HeLa_A486_30min_R1 1 EFTGSPPSSATKK 13 1 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFT(0.532)GS(0.468)PPSSATKK 66.797 0.012074 899010000 297760 248110 115520 113130 256370 253810 318410 306540 160590 354710 TRUE FALSE FALSE 276888.5616 228448.86 160252.4377 263372.3573 224213.684 222497.5028 238740.4502 236747.5337 174510.0705 265888.3072 1.041371712 0.859191073 0.602705848 0.990537568 0.843262671 0.836808151 0.897897515 0.8904022 0.656328487 1 18.02046081 -10.13418059 4.257718507 1.000028918 0.846362374 0.11757227 0.126157581 167081508.7 2.873276308 51807.91177 0.029792394 7.34E-11 10.13418059 -0.153666544 EFTGS(ph)PPSSATK ddPTM_HeLa_A485_30min_R1 2 EFTGSPPSSATK 12 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFTGS(0.947)PPS(0.041)S(0.011)ATK;EFTGS(0.981)PPS(0.009)S(0.011)ATK ; 131.32 2.66E-05 306410000 1076790 857490 746830 1600860 1273380 888870 1361470 1125570 984030 2048720 TRUE FALSE FALSE 1316318.221 957765.9963 1023113.495 1688310.928 1146597.816 935409.8587 1070580.812 849522.1927 1181515.795 1538011.808 0.855857032 0.622729937 0.665218232 1.097722995 0.745506511 0.608194198 0.69608101 0.552350891 0.768209834 1 20.55263515 -5.998229574 24.99997546 0.69314667 0.803485107 0.040234603 0.163692194 153.7694477 2171295.287 0.050987713 0.057418444 1.00E-06 5.998229574 0.110338436 EFTGS(ph)PPSSATK ddPTM_HeLa_A486_30min_R1 3 EFTGSPPSSATK 12 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFT(0.007)GS(0.972)PPS(0.012)S(0.008)AT(0.002)K;EFT(0.001)GS(0.732)PPS(0.243)S(0.024)ATK;EFTGS(0.785)PPS(0.197)S(0.018)ATK ;; 97.86 0.00080447 936400000 1446230 1599100 1044156 622903 1536310 1694740 1852660 1842310 1400270 1872350 TRUE FALSE FALSE 1344856.745 1472381.492 1448481.167 1450149.664 1343611.674 1485660.21 1389104.873 1422856.23 1521646.531 1403501.373 0.958215482 1.049077344 1.032048272 1.033237082 0.957328365 1.05853848 0.989742439 1.013790409 1.084178869 1 20.42059904 -7.589827388 24.99993375 1.04438821 1.013153661 0.092668272 0.037877441 126.857287 47367.20403 0.024043575 0.009087617 2.57E-08 7.589827388 -0.031234549 EFTGS(ph)PPSSATKK ddPTM_HeLa_A485_30min_R1 2 EFTGSPPSSATKK 13 1 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFT(0.014)GS(0.985)PPSSATKK;EFT(0.026)GS(0.973)PPSSATKK ; 87.932 0.0010521 3033600000 1607560 1493670 957180 1866280 1957490 1899670 2675860 2957390 1381240 2537000 TRUE FALSE FALSE 1965156.176 1668341.713 1311280.714 1968230.151 1762595.422 1999133.784 2104140.651 2232085.465 1658442.199 1904572.59 1.031809544 0.875966462 0.688490804 1.033423541 0.925454578 1.049649561 1.104783647 1.171961351 0.8707687 1 20.86103584 -5.846723608 1.663633418 1.051242377 0.876685761 0.235283286 0.11524891 0.475646547 2.720418856 0.04296669 0.053702053 1.42E-06 5.846723608 -0.174556616 EFTGS(ph)PPSSATKK ddPTM_HeLa_A486_30min_R1 2 EFTGSPPSSATKK 13 1 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFT(0.242)GS(0.755)PPS(0.002)S(0.001)ATKK;EFT(0.049)GS(0.95)PPS(0.001)SATKK ; 79.317 0.0033528 2712200000 1265890 1134810 525190 492080 1139540 1230900 1491330 1419690 815100 1538690 TRUE FALSE FALSE 1177157.648 1044883.523 728557.6331 1145587.108 996608.2674 1079044.073 1118183.46 1096457.579 885753.5243 1153392.009 1.020604997 0.905922284 0.631665234 0.99323309 0.864067255 0.935539751 0.96947391 0.950637398 0.767955316 1 20.1374515 EFVS(ph)SDESSSGENK ddPTM_HeLa_A485_30min_R1 1 EFVSSDESSSGENK 14 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 EFVS(0.927)S(0.073)DESSSGENK 253.06 4.52E-42 0 116790 105570 98633 187710 169680 116640 168250 157850 123550 238770 TRUE FALSE FALSE 142769.5326 117915.4932 135121.4512 197964.122 152786.0634 122747.09 132302.013 119137.04 148345.3517 179249.0332 0.796487044 0.657830567 0.753819693 1.104408311 0.852367573 0.684785228 0.738090525 0.66464537 0.827593595 1 17.45160581 -6.226532658 24.22871481 0.759254951 0.833933241 0.017643992 0.137804986 1409.207904 978129.2526 0.047571944 0.047569447 5.94E-07 6.226532658 0.07467829 EGAAGS(ph)PGGPR ddPTM_HeLa_A485_30min_R1 1 EGAAGSPGGPR 11 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2;H7BZZ8;B5MCI0 A0A087WVP4 SMTN Smoothelin 1 0 EGAAGS(1)PGGPR 124.48 6.50E-05 386410000 297250 356150 365090 295970 570110 386040 459460 451690 355090 482180 TRUE FALSE FALSE 363372.237 397798.6444 500151.9837 312138.0917 513347.8466 406252.4575 361292.6176 340912.3193 426353.3059 361981.3999 1.003842289 1.098947749 1.381706308 0.862304228 1.418160841 1.122302023 0.998097189 0.941795129 1.177832082 1 18.46555604 -6.649810299 5.690045171 1.025472358 1.157862749 0.113901148 0.162579445 0.446573584 20.61313056 0.061050637 0.046774878 2.24E-07 6.649810299 0.132390391 EGAAGS(ph)PGGPR ddPTM_HeLa_A486_30min_R1 1 EGAAGSPGGPR 11 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2;H7BZZ8;B5MCI0 A0A087WVP4 SMTN Smoothelin 1 0 EGAAGS(1)PGGPR 107.52 0.0006579 394880000 418750 475770 377350 168410 563120 449320 449160 507910 398640 508240 TRUE FALSE FALSE 389397.7874 438068.2525 523470.0258 392066.991 492488.2387 393887.4668 336775.4173 392269.9806 433194.4362 380973.3959 1.022112808 1.149865731 1.37403302 1.029119081 1.292710315 1.033897566 0.883986706 1.029651899 1.137072669 1 18.53933073 -6.428154118 8.052488556 1.007296718 1.174924723 0.319076704 0.114619029 0.365367603 27.93987594 0.040380112 0.035529053 3.73E-07 6.428154118 0.167628005 EGAKDIDISS(ph)PEFK ddPTM_HeLa_A485_30min_R1 2 EGAKDIDISSPEFK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 EGAKDIDIS(0.047)S(0.953)PEFK;EGAKDIDIS(0.131)S(0.869)PEFK ; 171.68 1.54E-12 811570000 284530 734190 298580 388700 1240320 1706490 3081900 8324300 516000 870250 TRUE FALSE FALSE 347822.7169 820047.1339 409037.167 409933.6968 1116829.386 1795839.178 2423426.888 6282752.373 619556.467 653312.6908 0.532398531 1.255213844 0.626097078 0.627469361 1.709486746 2.748820286 3.709444072 9.616761563 0.948330678 1 19.31741414 -6.442569487 1.960930076 4.512626708 0.851054492 0.246708467 2.28642935 0.387549867 2.960604295 0.962531098 0.777797204 3.61E-07 6.442569487 -3.661572216 EGAKDIDISS(ph)PEFK ddPTM_HeLa_A486_30min_R1 1 EGAKDIDISSPEFK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 EGAKDIDIS(0.028)S(0.972)PEFK 109.42 0.00014117 131340000 220240 84277 58776 165780 306750 104530 293610 355060 76002 306660 TRUE FALSE FALSE 204802.3133 77598.58359 81535.64128 385944.2181 268274.5547 91634.15138 220145.6725 274220.5889 82589.91455 229870.34 0.890947102 0.337575451 0.354702748 1.678964838 1.16706903 0.39863408 0.957694988 1.192935935 0.35928913 1 17.8104608 EGALSSES(ph)GAS(ph)SSSYS(ph)GESLR ddPTM_HeLa_A486_30min_R1 1 EGALSSESGASSSSYSGESLR 21 0 Q9NQR7 Q9NQR7 CCDC177 Coiled-coil domain-containing protein 177 3 0 EGALS(0.441)S(0.476)ES(0.522)GAS(0.521)S(0.02)S(0.02)S(0.032)Y(0.013)S(0.562)GES(0.394)LR 52.612 0.027458 78321000 5927.4 5416.7 5888.7 1939 6513.7 4415.6 4848.6 7287.6 6140.8 3244.3 TRUE FALSE FALSE 5511.919869 4987.460965 8168.962345 4514.089992 5696.691008 3870.848167 3635.428997 5628.372567 6673.089488 2431.906163 2.266501871 2.05084433 3.35907794 1.856194149 2.342479778 1.591693062 1.494888681 2.314387229 2.743974907 1 11.24787185 EGAS(ph)SPVQVPGPVAASTEALLQVK ddPTM_HeLa_A486_30min_R1 2 EGASSPVQVPGPVAASTEALLQVK 24 0 K7EN65 K7EN65 MBD1 1 0 EGAS(0.492)S(0.492)PVQVPGPVAAS(0.008)T(0.008)EALLQVK;EGAS(0.499)S(0.499)PVQVPGPVAAS(0.001)T(0.001)EALLQVK ; 80.224 0.0040293 10882000 25203.6 26305.7 21154.1 12581.1 30271.1 27783.2 30190.5 31935.8 23135.9 32240.1 TRUE FALSE FALSE 23436.95779 24221.14053 29345.53405 29289.43661 26474.21637 24355.59126 22636.51758 24664.71549 25141.33844 24166.96911 0.969793013 1.002241548 1.214282764 1.21196152 1.095471106 1.007804957 0.936671764 1.020596144 1.040318226 1 14.56074893 -6.260074694 5.067303828 0.997649922 1.106715466 0.287868306 0.076455607 0.255996409 21.12528072 0.029740676 0.02791179 5.49E-07 6.260074694 0.109065544 EGASGRPGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EGASGRPGSPK 11 1 E7EW15;E7EMV7;A0A0A0MRZ4;Q15025-7;Q15025-8;Q15025-5;Q15025-6;Q15025-4;Q15025-3;Q15025-2;Q15025 E7EW15 TNIP1 TNFAIP3-interacting protein 1 1 0 EGASGRPGS(1)PK;EGAS(0.004)GRPGS(0.996)PK ; 123.71 0.00091125 737660000 504100 429120 212577 820560 354640 456430 678520 716990 394720 1047070 TRUE FALSE FALSE 616235.3059 479301.8512 291218.0784 865385.115 319330.7964 480327.969 533548.659 541147.0783 473936.6834 786054.7189 0.783959807 0.609756343 0.370480669 1.100922231 0.406244996 0.611061746 0.678767834 0.688434361 0.602930905 1 19.58427022 -10.60863679 2.621059633 1.033179171 0.647745433 0.230852912 0.191451551 22188507.39 19974670.17 5042324.054 0.047066366 2.46E-11 10.60863679 -0.385433737 EGASGRPGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EGASGRPGSPK 11 1 E7EW15;E7EMV7;A0A0A0MRZ4;Q15025-7;Q15025-8;Q15025-5;Q15025-6;Q15025-4;Q15025-3;Q15025-2;Q15025 E7EW15 TNIP1 TNFAIP3-interacting protein 1 1 0 EGAS(0.009)GRPGS(0.991)PK;EGAS(0.099)GRPGS(0.901)PK ; 130.19 0.00058383 259130000 448480 197726 195025 231330 213150 520510 461340 349010 355130 714550 TRUE FALSE FALSE 417043.868 182057.4717 270543.903 538547.9308 186414.7395 456294.7684 345907.8524 269548.0418 385912.9543 535622.0291 0.778615974 0.339899149 0.50510227 1.005462624 0.348034116 0.851896942 0.645805874 0.503243009 0.720494926 1 19.03085577 -14 0.276438704 3.668334142 0.60152659 0.228536873 0.203553128 329.3344524 3.176888507 503.1585444 0.23388792 1.00E-14 14 -3.066807551 EGDELEDNGKNFYES(ph)DDDQKEK ddPTM_HeLa_A485_30min_R1 3 EGDELEDNGKNFYESDDDQKEK 22 2 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 EGDELEDNGKNFY(0.078)ES(0.922)DDDQKEK;EGDELEDNGKNFYES(1)DDDQKEK;EGDELEDNGKNFYES(1)DDDQKEK ;; 215.2 9.99E-29 4814230000 1021360 378295 238716 3042690 729892 725270 1800450 1246330 451323 3869190 TRUE FALSE FALSE 1248558.008 422533.3095 327026.9822 3208904.45 657221.3897 763244.0157 1415769.149 940665.6133 541899.3863 2904672.14 0.429844729 0.145466782 0.112586539 1.10473895 0.226263536 0.262764257 0.487410999 0.323845711 0.186561292 1 21.4699439 -10.1819929 4.880747558 1.000062818 0.367691916 0.328920976 0.272330556 0.000191415 3.21E-05 0.26474819 0.06420437 6.58E-11 10.1819929 -0.632370901 EGDELEDNGKNFYES(ph)DDDQKEK ddPTM_HeLa_A486_30min_R1 5 EGDELEDNGKNFYESDDDQKEK 22 2 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 EGDELEDNGKNFYES(1)DDDQKEK;EGDELEDNGKNFY(0.01)ES(0.99)DDDQKEK;EGDELEDNGKNFYES(1)DDDQKEK;EGDELEDNGKNFYES(1)DDDQKEK;EGDELEDNGKNFYES(1)DDDQKEK ;;;; 290.05 2.43E-87 7614340000 2554970 1941630 467966 3397200 1209547 3453990 5730130 4612380 1425012 9467150 TRUE FALSE FALSE 2375879.797 1787768.168 649174.9678 7908853.285 1057834.337 3027871.831 4296390.867 3562241.762 1548533.188 7096514.019 0.334795336 0.251922023 0.091478008 1.114470184 0.14906394 0.426670309 0.605422727 0.501970651 0.218210403 1 22.75867908 -11.23723511 2.22789236 2.964464706 0.418323778 0.285691858 0.279416049 22706143.1 3766507.098 224785171 0.069121381 5.79E-12 11.23723511 -2.546140928 EGDIIPPLTGAT(ph)PPLIGHLK ddPTM_HeLa_A485_30min_R1 4 EGDIIPPLTGATPPLIGHLK 20 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EGDIIPPLTGAT(1)PPLIGHLK;EGDIIPPLTGAT(1)PPLIGHLK;EGDIIPPLTGAT(1)PPLIGHLK;EGDIIPPLT(0.001)GAT(0.999)PPLIGHLK ;;; 174.01 9.59E-14 1966850000 558449 568563 452583 658112 758411 636369 821986 817643 566223 865612 TRUE FALSE FALSE 682674.0534 635051.497 620012.2852 694062.9921 682900.9379 669688.2968 646361.9761 617114.7722 679858.7624 649830.8588 1.050541143 0.977256602 0.954113331 1.068067148 1.050890287 1.030557856 0.994661868 0.949654458 1.046208799 1 19.30970473 -9.850508593 13.3282331 0.999996489 1.011501648 0.007704859 0.04051879 0 0 0.040893451 0.009918119 1.41E-10 9.850508593 0.011505159 EGDIIPPLTGAT(ph)PPLIGHLK ddPTM_HeLa_A486_30min_R1 4 EGDIIPPLTGATPPLIGHLK 20 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EGDIIPPLTGAT(1)PPLIGHLK;EGDIIPPLTGAT(1)PPLIGHLK;EGDIIPPLT(0.001)GAT(0.999)PPLIGHLK;EGDIIPPLTGAT(1)PPLIGHLK ;;; 223.85 2.31E-35 1986790000 709216 750213 481403 293113 769969 765711 902222 901550 583632 906440 TRUE FALSE FALSE 659503.6208 690763.3897 667815.134 682381.8771 673392.3083 671245.362 676476.5129 696286.7457 634221.6917 679461.5241 0.970626882 1.016633562 0.982859383 1.00429804 0.991067609 0.987907833 0.995606799 1.024762582 0.93341811 1 19.37403233 -7.755364146 24.99961881 0.966709057 0.996655373 0.244999447 0.021073171 171.3418409 705093.7855 0.013721332 0.004892834 1.76E-08 7.755364146 0.029946316 EGDLIAAQAR ddPTM_HeLa_A485_30min_R1 1 EGDLIAAQAR 10 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 149.57 0.00070201 24797000 30998 33073 37543 33046 51658 31835 36381 44100 35625 49931 FALSE FALSE TRUE 37893.39816 36940.59965 51431.71799 34851.2193 46514.74814 33501.83137 28607.90214 33284.40585 42774.61073 37484.12061 1.010918691 0.985499968 1.372093493 0.929759555 1.240918751 0.893760633 0.763200568 0.887960163 1.141139502 1 15.19399194 -6.285228129 24.58825601 0.919333935 1.105829142 0.240000448 0.150118016 891.536828 921496.6405 0.052554921 0.046374131 5.19E-07 6.285228129 0.186495207 EGDPVSLSTPLETEFGS(ph)PSELS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EGDPVSLSTPLETEFGSPSELSPR 24 0 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 2 0 EGDPVSLSTPLETEFGS(0.975)PS(0.025)ELS(1)PR;EGDPVSLSTPLETEFGS(0.896)PS(0.104)ELS(1)PR ; 199.04 1.78E-28 158213000 112952 131538 108212 55926.3 153483 126296 144189 146984 108091 129839 TRUE FALSE FALSE 105034.6481 121114.4498 150114.5844 130199.2528 134231.731 110714.8836 108111.3871 113518.9518 117460.4149 97326.46929 1.079199203 1.244414297 1.542381898 1.337757896 1.379190388 1.137561903 1.110811765 1.166372855 1.206870194 1 16.5705446 -6.27264395 23.48409797 1.133877138 1.326299171 0.391432568 0.119263027 370.7974701 777165.443 0.043882738 0.039099961 5.34E-07 6.27264395 0.192422033 EGDPVSLSTPLETEFGSPSELS(ph)PR ddPTM_HeLa_A485_30min_R1 4 EGDPVSLSTPLETEFGSPSELSPR 24 0 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 EGDPVSLSTPLETEFGSPS(0.002)ELS(0.998)PR;EGDPVSLSTPLETEFGSPSELS(1)PR;EGDPVSLSTPLETEFGSPS(0.001)ELS(0.999)PR;EGDPVSLSTPLETEFGSPSELS(1)PR ;;; 201.35 1.18E-28 281569000 286918 368625 359542 312511 450661 352983 454051 459866 346404 419305 TRUE FALSE FALSE 350741.9192 411732.4871 492551.5476 329582.6846 405791.6085 371464.6441 357039.2946 347083.1425 415924.1054 314779.9802 1.114244683 1.308000867 1.564748645 1.047025558 1.289127753 1.180077093 1.134250324 1.1026214 1.321316893 1 18.26398426 -5.294651195 24.99975708 1.163722249 1.326898642 0.253787486 0.137115509 902.897682 679642.5282 0.038040698 0.056427386 5.07E-06 5.294651195 0.163176393 EGDPVSLSTPLETEFGSPSELS(ph)PR ddPTM_HeLa_A486_30min_R1 4 EGDPVSLSTPLETEFGSPSELSPR 24 0 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 EGDPVSLSTPLETEFGS(0.001)PS(0.022)ELS(0.978)PR;EGDPVSLSTPLETEFGSPS(0.005)ELS(0.995)PR;EGDPVSLSTPLETEFGSPS(0.014)ELS(0.986)PR;EGDPVSLSTPLETEFGS(0.001)PS(0.032)ELS(0.967)PR ;;; 214.11 1.11E-29 292733000 348651 403670 358363 144931 443871 390877 407831 445630 336288 408853 TRUE FALSE FALSE 324212.3653 371681.7191 497130.7509 337406.6924 388196.5602 342654.5699 305787.3702 344169.777 365437.7146 306473.5476 1.05788042 1.21276933 1.62210003 1.100932511 1.266656008 1.118055938 0.997761055 1.122999945 1.192395616 1 18.22540303 -6.311638184 3.718902813 1.084662637 1.263513639 0.232078833 0.150988945 0.373028462 10.6899108 0.056607815 0.050796709 4.88E-07 6.311638184 0.178851003 EGDRESWS(ph)S(ph)GED ddPTM_HeLa_A486_30min_R1 1 EGDRESWSSGED 12 1 P48681 P48681 NES Nestin 2 0 EGDRES(0.002)WS(0.998)S(1)GED 96.464 0.0060388 818590000 497190 638020 693960 287380 1083300 675070 829000 917350 564860 619110 TRUE FALSE FALSE 462339.5485 587460.9716 962679.8969 669035.1634 947422.4126 591786.727 621575.4317 708489.4306 613822.5196 464080.8263 0.9962479 1.265859174 2.074379811 1.441635003 2.041503029 1.275180299 1.339368913 1.526650942 1.322662961 1 18.82401657 EGDVDVS(ph)DS(ph)DDEDDNLPANFDTCHR ddPTM_HeLa_A485_30min_R1 1 EGDVDVSDSDDEDDNLPANFDTCHR 25 0 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 2 0 EGDVDVS(1)DS(1)DDEDDNLPANFDTCHR 171.99 3.56E-14 588260000 129170 165500 166510 180560 241140 131720 195580 158070 157850 237460 TRUE FALSE FALSE 157903.4209 184853.7853 228108.9781 190423.5356 217131.2549 138616.6555 153792.7353 119303.0847 189529.0471 178265.5921 0.885776212 1.036957178 1.279601831 1.068201291 1.218021113 0.777585028 0.862716879 0.669243477 1.063183561 1 17.44366874 -6.267007321 24.99856182 0.853134195 1.102801844 0.376159627 0.142292722 458.4948692 2058512.953 0.048921359 0.044332263 5.41E-07 6.267007321 0.249667649 EGDVDVS(ph)DS(ph)DDEDDNLPANFDTCHR ddPTM_HeLa_A486_30min_R1 2 EGDVDVSDSDDEDDNLPANFDTCHR 25 0 F5H148;H3BMT1;Q9NYV6-3;Q9NYV6;Q9NYV6-2;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 2 0 EGDVDVS(1)DS(1)DDEDDNLPANFDTCHR;EGDVDVS(1)DS(1)DDEDDNLPANFDTCHR ; 218.63 4.86E-38 1674360000 615940 733030 546760 276140 722030 680270 782930 772870 613470 719200 TRUE FALSE FALSE 572765.7867 674942.0332 758480.1147 642867.8753 631466.2647 596345.2039 587032.633 596904.3726 666646.0735 539107.6388 1.062433076 1.251961546 1.406917766 1.192466641 1.171317598 1.106170941 1.088896893 1.107208152 1.236573229 1 19.04021383 -5.847670069 2.485547609 1.115007049 1.245993777 0.260318507 0.095101604 0.396322675 4.995048921 0.032627484 0.039143805 1.42E-06 5.847670069 0.130986727 EGDVLTLLESER ddPTM_HeLa_A485_30min_R1 1 EGDVLTLLESER 12 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 0 90.142 0.027963 24740000 39405 39671 31637 37628 65596 39376 64769 61557 29385 55007 FALSE FALSE TRUE 48170.5063 44310.17836 43340.84283 39683.52236 59065.03192 41437.66647 50930.57404 46460.04923 35282.29996 41294.76723 1.166503883 1.073021628 1.04954806 0.960981863 1.430327276 1.003460469 1.233342078 1.125083209 0.854401231 1 15.33367136 -7.747263532 24.57849571 0.927200671 1.129249604 0.283031026 0.129282103 209.2208543 362758.0295 0.085814896 0.032074561 1.79E-08 7.747263532 0.202048933 EGEDGDQPT(ph)TPPKPLK ddPTM_HeLa_A485_30min_R1 1 EGEDGDQPTTPPKPLK 16 1 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EGEDGDQPT(0.5)T(0.5)PPKPLK 89.011 0.0013185 1749000000 2081800 1327200 725750 3316400 1254700 1534900 2545800 1842700 1253500 4071100 TRUE FALSE FALSE 2544889.228 1482404.495 994235.126 3497566.534 1129777.662 1615264.991 2001869.033 1390774.936 1505065.952 3056249.693 0.832683676 0.485040374 0.325312139 1.144398163 0.36966144 0.528512115 0.655008338 0.455059329 0.492455167 1 21.54333098 -10.8651572 2.433645163 1.195766702 0.583158353 0.223347254 0.230592893 82504157.03 47178926.28 93386310.32 0.05630277 1.36E-11 10.8651572 -0.612608349 EGEDGDQPT(ph)TPPKPLK ddPTM_HeLa_A486_30min_R1 1 EGEDGDQPTTPPKPLK 16 1 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EGEDGDQPT(0.561)T(0.439)PPKPLK 61.102 0.029247 1653900000 1440200 1169500 443960 671660 780690 1697900 1870800 1614600 1117700 2648300 TRUE FALSE FALSE 1339249.417 1076824.561 615873.2017 1563658.424 682768.5806 1488430.361 1402706.053 1246990.826 1214583.136 1985148.442 0.674634394 0.542440322 0.310240377 0.787678337 0.3439383 0.749782902 0.706600082 0.62815999 0.611834919 1 20.92081546 -14 0.174090989 2.654909749 0.498980569 0.419538143 0.147683382 125.4630264 1.193420307 71.39330951 0.488319104 1.00E-14 14 -2.155929181 EGEDGDQPTT(ph)PPKPLK ddPTM_HeLa_A485_30min_R1 4 EGEDGDQPTTPPKPLK 16 1 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EGEDGDQPT(0.2)T(0.8)PPKPLK;EGEDGDQPT(0.163)T(0.837)PPKPLK;EGEDGDQPT(0.138)T(0.862)PPKPLK;EGEDGDQPT(0.178)T(0.822)PPKPLK ;;; 144.01 9.98E-08 2832588000 2917030 1789120 987780 4427060 1747650 2204830 3373700 2573220 1546070 5388210 TRUE FALSE FALSE 3565913.26 1998342.021 1353200.927 4668899.078 1573647.83 2320271.489 2652881.434 1942133.76 1856352.068 4045028.41 0.881554565 0.494024224 0.334534344 1.154231468 0.389032578 0.573610678 0.655837528 0.480128583 0.458921886 1 21.9477184 -10.38631664 5.540920028 1.000159727 0.59844197 0.205084449 0.234698116 0.00044783 4.96E-05 0.219754061 0.053277221 4.11E-11 10.38631664 -0.401717757 EGEDGDQPTT(ph)PPKPLK ddPTM_HeLa_A486_30min_R1 3 EGEDGDQPTTPPKPLK 16 1 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EGEDGDQPT(0.375)T(0.625)PPKPLK;EGEDGDQPT(0.16)T(0.84)PPKPLK;EGEDGDQPT(0.154)T(0.846)PPKPLK ;; 100.67 0.00056652 4664400000 1944990 1776030 460100 810800 973910 2015170 2416670 2023820 1170250 3185450 TRUE FALSE FALSE 1808656.245 1635290.915 638263.0419 1887583.376 851753.1264 1766558.814 1811993.605 1563040.366 1271688.212 2387792.586 0.757459528 0.684854675 0.267302548 0.790513961 0.356711521 0.739829257 0.758857204 0.654596373 0.53257901 1 21.18724609 EGEEPTVYS(ph)DEEEPK ddPTM_HeLa_A485_30min_R1 1 EGEEPTVYSDEEEPK 15 0 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPTVYS(1)DEEEPK 242.91 2.79E-41 342750000 324090 247840 120980 286190 128520 186590 260710 232340 126460 486790 TRUE FALSE FALSE 396182.7024 276822.7321 165735.5364 301823.835 115724.0975 196359.5639 205007.1787 175358.2507 151839.362 365442.2117 1.084118609 0.757500702 0.453520505 0.82591399 0.316668666 0.537320423 0.56098385 0.479852204 0.415494864 1 18.47928376 -4.381106606 2.544976047 0.552775944 1.132634884 0.393341945 0.191938476 0.349653289 3.408377317 0.046825951 0.38545451 4.16E-05 4.381106606 0.579858939 EGEEPTVYS(ph)DEEEPKDESAR ddPTM_HeLa_A485_30min_R1 6 EGEEPTVYSDEEEPKDESAR 20 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR ;;;;; 275.14 1.10E-72 38592080000 4596980 2352008 1168030 7415430 2399336 2475994 4601570 4596190 2365801 15780030 TRUE FALSE FALSE 5619562.342 2627054.876 1600132.903 7820516.164 2160449.683 2605633.217 3618406.978 3468967.196 2840595.56 11846358.93 0.474370427 0.221760533 0.135073816 0.660162013 0.182372465 0.219952243 0.305444652 0.292829824 0.239786383 1 23.49794037 -10.30503049 3.203926418 1.004147987 0.300378016 0.667550257 0.147435302 36063709.53 49822471.92 1435546.457 0.03678558 4.95E-11 10.30503049 -0.703769971 EGEEPTVYS(ph)DEEEPKDESAR ddPTM_HeLa_A486_30min_R1 7 EGEEPTVYSDEEEPKDESAR 20 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPT(0.001)VYS(0.999)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVY(0.001)S(0.999)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR ;;;;;; 273.64 1.21E-72 33494900000 3394855 2985451 1401315 1754369 2587804 4117434 4876201 3655200 2702480 6715300 TRUE FALSE FALSE 3156893.196 2748872.99 1943941.697 4084259.693 2263217.492 3609466.856 3656123.935 2822990.752 2936733.142 5033745.171 0.627146009 0.546089025 0.386181984 0.811375935 0.449609071 0.71705395 0.726322809 0.560813203 0.58340918 1 22.26320075 -14 0.261044681 3.574859188 0.569517707 0.492393395 0.121638087 166.1679398 1.633348462 229.686164 0.158659299 1.00E-14 14 -3.005341481 EGEEPTVYS(ph)DEEEPKDESARK ddPTM_HeLa_A485_30min_R1 1 EGEEPTVYSDEEEPKDESARK 21 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPTVYS(1)DEEEPKDESARK 199.46 9.20E-27 835880000 364420 156140 83834 648890 199960 221200 434840 463210 184120 1408400 TRUE FALSE FALSE 445483.9718 174399.2148 114847.6852 684337.2176 180051.2803 232781.69 341932.8817 349607.0212 221071.1952 1057311.8 0.421336423 0.16494587 0.108622343 0.647242581 0.170291564 0.220163711 0.323398341 0.330656502 0.209087986 1 20.01196946 -10.93153476 2.520661771 1.479284468 0.286839905 0.672487945 0.148973175 41173428.53 21071086.19 116129957.8 0.036672694 1.17E-11 10.93153476 -1.192444563 EGEEPTVYS(ph)DEEEPKDESARK ddPTM_HeLa_A486_30min_R1 1 EGEEPTVYSDEEEPKDESARK 21 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPTVYS(1)DEEEPKDESARK 238.7 1.17E-46 621250000 427770 289610 104420 268350 314940 534940 616880 459460 282590 970210 TRUE FALSE FALSE 397785.532 266660.2489 144854.2205 624732.3617 275437.2885 468944.5417 462530.0993 354850.9879 307085.1287 727263.101 0.546962346 0.366662695 0.199177189 0.859018367 0.378731285 0.64480728 0.635987305 0.487926567 0.422247641 1 19.47211785 -14 0.280446458 4.576569293 0.475003898 0.416964999 0.174188323 229.7721549 2.203564416 478.9895161 0.200927012 1.00E-14 14 -4.101565395 EGEET(ph)EGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_HeLa_A485_30min_R1 1 EGEETEGSEEDDKENDKTEEMPNDSVLENK 30 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 2 0 EGEET(1)EGS(1)EEDDKENDKTEEMPNDSVLENK 96.027 0.002635 700820000 266320 141410 81534 788480 168650 199730 392440 241180 106210 771940 TRUE FALSE FALSE 325561.9652 157946.6694 111696.8195 831552.6659 151858.6138 210187.554 308591.9881 182030.2268 127525.3728 579509.5645 0.56178877 0.272552308 0.192743703 1.434924834 0.262046777 0.362699025 0.532505427 0.314110824 0.220057408 1 19.14447295 -10.30495984 4.190296837 1.00065081 0.465643239 0.178515841 0.346453907 962731241 1214517890 7287138.149 0.087008011 4.95E-11 10.30495984 -0.535007571 EGETQGVAFEHESPADFQNS(ph)QSPVQDQDK ddPTM_HeLa_A485_30min_R1 1 EGETQGVAFEHESPADFQNSQSPVQDQDK 29 0 P78332;E9PGM9;P78332-3;F8WCA5 P78332 RBM6 RNA-binding protein 6 1 0 EGETQGVAFEHESPADFQNS(0.626)QS(0.374)PVQDQDK 352.59 3.00E-146 376460000 120020 131900 101840 90653 187610 110760 198540 151470 155340 244280 TRUE FALSE FALSE 146718.0349 147324.5576 139514.8539 95605.14384 168930.8897 116559.2223 156120.3071 114321.745 186515.3131 183385.4916 0.800052576 0.80335994 0.760773672 0.521334283 0.921179141 0.635596749 0.85132311 0.623395799 1.017066898 1 17.48451998 -7.776599813 24.97541317 1.008533785 0.741487094 0.479113225 0.112140349 218.1536642 359377.3533 0.099660215 0.026136751 1.67E-08 7.776599813 -0.26704669 EGETQGVAFEHESPADFQNSQS(ph)PVQDQDK ddPTM_HeLa_A486_30min_R1 2 EGETQGVAFEHESPADFQNSQSPVQDQDK 29 0 P78332;E9PGM9;P78332-3;F8WCA5 P78332 RBM6 RNA-binding protein 6 1 0 EGETQGVAFEHESPADFQNS(0.24)QS(0.76)PVQDQDK;EGETQGVAFEHES(0.172)PADFQNS(0.053)QS(0.775)PVQDQDK ; 266.72 8.18E-64 768670000 188577 231550 161259 14160.5 212785 227480 197821 210199 187139 101224 TRUE FALSE FALSE 175358.7261 213201.1347 223702.8035 32966.35963 186095.5212 199415.8304 148324.0935 162341.2763 203360.3592 75876.85154 2.311096501 2.809831067 2.948235185 0.434471897 2.452599408 2.628151095 1.954800317 2.139536275 2.680137026 1 16.2113722 -10.72635364 2.617279522 0.760062234 2.248358874 0.2385898 0.67598873 45934750.08 37983393.1 72166215.94 0.172587803 1.88E-11 10.72635364 1.488296639 EGETQGVAFEHESPADFQNSQS(ph)PVQDQDKSQLSGR ddPTM_HeLa_A485_30min_R1 1 EGETQGVAFEHESPADFQNSQSPVQDQDKSQLSGR 35 1 P78332;E9PGM9;P78332-3;F8WCA5 P78332 RBM6 RNA-binding protein 6 1 0 EGETQGVAFEHESPADFQNS(0.003)QS(0.997)PVQDQDKSQLSGR 306.92 6.24E-95 513910000 57631 157440 105840 30691 197820 141280 227690 343560 99087 107920 TRUE FALSE FALSE 70450.81713 175851.2385 144994.6204 32367.57162 178124.3462 148677.2023 179042.1714 259301.3713 118972.852 81017.53012 0.86957498 2.170533194 1.789669719 0.399513186 2.198590181 1.835123857 2.209918905 3.200558829 1.468482831 1 16.30594648 EGFES(ph)DTDSEFTFK ddPTM_HeLa_A485_30min_R1 2 EGFESDTDSEFTFK 14 0 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EGFES(0.999)DT(0.001)DSEFTFK;EGFES(0.993)DT(0.007)DSEFTFK ; 186.62 1.62E-17 572710000 834030 661870 529860 1078750 935710 752120 1077400 916190 748690 1388310 TRUE FALSE FALSE 1019557.096 739269.939 725877.2633 1137679.381 842547.4269 791499.8402 847204.6885 691492.966 898945.2156 1042229.867 0.978245902 0.709315634 0.696465613 1.091582018 0.808408446 0.759429244 0.812877001 0.663474525 0.862521066 1 19.99124207 -5.97495192 24.99970866 0.796616174 0.858287367 0.017627516 0.135010265 863.8342027 862162.0273 0.041894318 0.047502212 1.06E-06 5.97495192 0.061671193 EGFES(ph)DTDSEFTFK ddPTM_HeLa_A486_30min_R1 3 EGFESDTDSEFTFK 14 0 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EGFES(0.999)DT(0.001)DSEFTFK;EGFES(0.993)DT(0.007)DSEFTFK;EGFES(0.993)DT(0.007)DSEFTFK ;; 260.75 9.89E-42 800800000 842970 951177 532695 425316 895775 1061251 1236568 1147183 765634 1209899 TRUE FALSE FALSE 783882.1561 875802.2704 738968.7701 990157.1423 783418.5467 930324.6416 927165.6073 885994.4737 831999.7716 906932.4153 0.86432257 0.965675342 0.814800263 1.091765081 0.863811386 1.02579269 1.022309482 0.976913449 0.917377919 1 19.79063552 -5.248078594 24.99107453 0.982614047 0.890006997 0.326710116 0.067897067 1004.758966 1879377.716 0.017536566 0.030163275 5.65E-06 5.248078594 -0.09260705 EGFESDT(ph)DSEFTFK ddPTM_HeLa_A486_30min_R1 1 EGFESDTDSEFTFK 14 0 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EGFES(0.327)DT(0.672)DSEFTFK 311.33 5.51E-68 392750000 544370 572900 310790 232030 532190 601730 714820 610920 428860 663040 TRUE FALSE FALSE 506212.4741 527501.3175 431136.2112 540177.5661 465437.7677 527494.6705 535964.4754 471826.8523 466033.9301 497010.4683 1.018514712 1.061348505 0.867459015 1.086853498 0.936474777 1.061335131 1.078376633 0.949329808 0.937674274 1 18.92291671 EGFGLSENPFASLS(ph)PDEQKDEK ddPTM_HeLa_A485_30min_R1 2 EGFGLSENPFASLSPDEQKDEK 22 1 B4DT96;C9JYA1;O15504-2;O15504 B4DT96 NUPL2 Nucleoporin-like protein 2 1 0 EGFGLSENPFAS(0.015)LS(0.985)PDEQKDEK;EGFGLSENPFAS(0.04)LS(0.96)PDEQKDEK ; 228.62 1.34E-36 397430000 143895 132145 98604 297060 180782 169581 280930 263020 136849 370000 TRUE FALSE FALSE 175903.9463 147598.2082 135081.7229 313287.6356 162782.7093 178459.9989 220907.0105 198513.9326 164313.339 277765.8093 0.633281493 0.531376445 0.486315156 1.127884085 0.586043004 0.642483678 0.795299504 0.71468095 0.591553508 1 18.0835095 -14 0.228933489 2.642398159 0.648120014 0.232655541 0.172503398 254.9843381 2.553106204 194.7818033 0.310232111 1.00E-14 14 -1.994278144 EGFGLSENPFASLS(ph)PDEQKDEK ddPTM_HeLa_A486_30min_R1 2 EGFGLSENPFASLSPDEQKDEK 22 1 B4DT96;C9JYA1;O15504-2;O15504 B4DT96 NUPL2 Nucleoporin-like protein 2 1 0 EGFGLSENPFAS(0.01)LS(0.99)PDEQKDEK;EGFGLSENPFASLS(1)PDEQKDEK ; 220.67 3.34E-36 305040000 251439 238561 118308 178186 217463 286670 400250 347460 179821 451710 TRUE FALSE FALSE 233814.4245 219656.5575 164120.026 414826.013 190186.7628 251303.57 300103.2166 268350.943 195408.0291 338598.8759 0.690535147 0.648722052 0.484703399 1.225125193 0.56168752 0.742186664 0.886308957 0.792533473 0.577107731 1 18.36921766 -11.65868933 2.215656242 8.482949806 0.740235229 0.138306315 0.198450469 8087552.43 505740.9847 306078200 0.049056891 2.19E-12 11.65868933 -7.742714577 EGFLDTLVVLHR ddPTM_HeLa_A485_30min_R1 2 EGFLDTLVVLHR 12 0 K7ES20;K7ENC6;J3QRG6;P42771-2;P42771;P42771-4;P42772 K7ES20 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B 0 0 ; ; 119.76 0.00049334 103861000 69950 72815 75259 66764 95055 90133 100333 115761 64599 87950 FALSE FALSE TRUE 85510.13618 81330.08084 103100.4359 70411.14826 85590.99044 94852.22451 78896.0349 87370.43324 77563.42676 66025.6836 1.29510414 1.231794605 1.561520158 1.066420587 1.296328728 1.436595872 1.194929467 1.323279495 1.174746289 1 16.01073971 -8.053044549 2.61929802 0.999983872 1.300720716 0.355881512 0.125875771 0.344698357 5.555487208 0.116360226 0.031480274 8.85E-09 8.053044549 0.300736844 EGGGVHAVPPDPEDEGLEETGSKDKDQPPS(ph)PSPPPQSEALSSTSR ddPTM_HeLa_A485_30min_R1 1 EGGGVHAVPPDPEDEGLEETGSKDKDQPPSPSPPPQSEALSSTSR 45 2 Q7L1V2;H3BU99;H3BPL8;H3BR21;H3BUX9 Q7L1V2 MON1B Vacuolar fusion protein MON1 homolog B 1 0 EGGGVHAVPPDPEDEGLEETGSKDKDQPPS(0.707)PS(0.032)PPPQS(0.01)EALS(0.063)S(0.063)T(0.063)S(0.063)R 116.11 1.13E-07 685870000 106580 72290 44246 144130 110090 126650 189330 163760 87688 218990 TRUE FALSE FALSE 130288.3533 80743.68666 60614.43663 152003.4569 99129.05305 133281.1982 148878.0988 123597.6032 105286.1773 164399.8232 0.792509084 0.491142175 0.368701349 0.924596231 0.602975424 0.810713756 0.905585516 0.751811047 0.640427558 1 17.32684922 -5.267478517 24.99921062 0.790808929 0.544819999 0.368818615 0.151623101 523.871668 2168584.925 0.041964469 0.064065463 5.40E-06 5.267478517 -0.24598893 EGGGVHAVPPDPEDEGLEETGSKDKDQPPS(ph)PSPPPQSEALSSTSR ddPTM_HeLa_A486_30min_R1 2 EGGGVHAVPPDPEDEGLEETGSKDKDQPPSPSPPPQSEALSSTSR 45 2 Q7L1V2;H3BU99;H3BPL8;H3BR21;H3BUX9 Q7L1V2 MON1B Vacuolar fusion protein MON1 homolog B 1 0 EGGGVHAVPPDPEDEGLEET(0.001)GS(0.001)KDKDQPPS(0.802)PS(0.196)PPPQSEALSSTSR;EGGGVHAVPPDPEDEGLEETGSKDKDQPPS(0.791)PS(0.206)PPPQS(0.001)EALSSTSR ; 116.37 1.10E-07 917590000 512190 438970 193574 288470 426830 570570 768650 769690 360360 922140 TRUE FALSE FALSE 476288.126 404184.4185 268531.0369 671572.7385 373293.0014 500178.8745 576325.64 594448.3892 391596.2949 691230.1419 0.689044208 0.584732051 0.388482823 0.97156171 0.540041556 0.723606863 0.833768097 0.859986209 0.566520861 1 19.3988066 -13.99999999 0.06708071 2.085930133 0.278217024 0.279790407 0.160831749 424.6146226 2.05560121 72.59891214 9.824549185 1.00E-14 13.99999999 -1.80771311 EGGKPPT(ph)PPPK ddPTM_HeLa_A486_30min_R1 2 EGGKPPTPPPK 11 1 Q8TD55-2;Q8TD55 Q8TD55-2 PLEKHO2 Pleckstrin homology domain-containing family O member 2 1 0 EGGKPPT(1)PPPK;EGGKPPT(1)PPPK ; 65.092 0.010209 383180000 2394450 1973300 789910 1679840 1750230 2736000 3655700 3215100 1751230 4863600 TRUE FALSE FALSE 2226611.42 1816928.521 1095784.307 3910752.414 1530699.833 2398460.138 2741005.194 2483091.915 1903028.026 3645722.903 0.610746203 0.498372633 0.300567085 1.072696011 0.419861814 0.657883279 0.75184134 0.68109727 0.521989212 1 21.79777348 -14 0.171184177 2.457486785 0.529018693 0.254163452 0.198544985 189.0129896 1.78649293 94.09899482 0.696111489 1.00E-14 14 -1.928468092 EGGS(ph)KSDSEDITR ddPTM_HeLa_A485_30min_R1 1 EGGSKSDSEDITR 13 1 E9PDC4;F5GYS8;H0YNY8;U3KPR8;O00470;O00470-2 E9PDC4 MEIS1 Homeobox protein Meis1 1 0 EGGS(0.867)KS(0.116)DS(0.016)EDITR 156.96 2.51E-07 1166800000 979320 995770 782300 1559200 1271800 1185300 1810800 1502700 950010 2175300 TRUE FALSE FALSE 1197166.355 1112216.639 1071705.324 1644375.148 1145175.126 1247360.475 1423907.787 1134160.469 1140668.293 1633037.743 0.733091663 0.681072219 0.656264883 1.006942524 0.701254537 0.763828319 0.871938075 0.694509648 0.698494752 1 20.6391267 -11.28513865 2.320112618 2.106845455 0.758764709 0.34195134 0.101339098 7504902.011 1540696.038 43302555.74 0.025961538 5.19E-12 11.28513865 -1.348080746 EGGSHFINTS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 EGGSHFINTSSPR 13 0 C9JP56;C9J5F9;O60907 C9JP56 TBL1X F-box-like/WD repeat-containing protein TBL1X 1 0 EGGSHFINT(0.088)S(0.456)S(0.456)PR 70.784 0.0077255 679770000 457530 470660 368390 544040 572220 429630 615940 564990 486580 742010 TRUE FALSE FALSE 559305.97 525699.5928 504672.791 573759.5276 515247.7676 452124.7625 484339.3872 426425.3166 584232.1428 557040.5627 1.004066862 0.943736647 0.905989303 1.030013909 0.924973516 0.811655008 0.869486748 0.765519327 1.048814363 1 19.08742286 -6.001201311 24.97310997 0.881003383 0.966008352 0.122137456 0.083810855 75.89832801 1577855.704 0.025144167 0.02814537 9.97E-07 6.001201311 0.08500497 EGGSHFINTSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 EGGSHFINTSSPR 13 0 C9JP56;C9J5F9;O60907 C9JP56 TBL1X F-box-like/WD repeat-containing protein TBL1X 1 0 EGGSHFINT(0.054)S(0.28)S(0.665)PR 76.341 0.0054123 658920000 222680 306840 200010 70766 256870 278300 245100 266140 225270 269480 TRUE FALSE FALSE 207071.2819 282524.8809 277459.2285 164746.8243 224650.9694 243966.1755 183773.3876 205545.7318 244796.585 202000.454 1.025103052 1.398634881 1.37355745 0.815576505 1.112131012 1.20775063 0.909767201 1.017550841 1.211861559 1 17.62399901 -5.238734349 24.99582396 1.044629681 1.279052109 0.327049487 0.148401877 920.1679518 1013005.949 0.039929328 0.069093577 5.77E-06 5.238734349 0.234422427 EGGSKS(ph)DSEDITR ddPTM_HeLa_A485_30min_R1 1 EGGSKSDSEDITR 13 1 E9PDC4;F5GYS8;H0YNY8;U3KPR8;O00470;O00470-2 E9PDC4 MEIS1 Homeobox protein Meis1 1 0 EGGS(0.006)KS(0.994)DSEDITR 173.37 1.34E-12 2965200000 2752200 2219900 1671800 4251700 3042100 2651400 4365900 3842600 2407300 5180500 TRUE FALSE FALSE 3364417.395 2479497.994 2290268.389 4483959.605 2739217.843 2790223.204 3433089.799 2900196.325 2890423.029 3889096.69 0.865089676 0.637551131 0.58889469 1.152956576 0.704332667 0.71744763 0.88274735 0.745724922 0.743211923 1 21.89100367 -11.47314311 2.127033772 3.226223887 0.780691902 0.159182622 0.150283984 9386931.356 864476.754 100310491.9 0.037676898 3.36E-12 11.47314311 -2.445531985 EGGSKS(ph)DSEDITR ddPTM_HeLa_A486_30min_R1 4 EGGSKSDSEDITR 13 1 E9PDC4;F5GYS8;H0YNY8;U3KPR8;O00470;O00470-2 E9PDC4 MEIS1 Homeobox protein Meis1 1 0 EGGS(0.147)KS(0.841)DS(0.012)EDITR;EGGS(0.212)KS(0.673)DS(0.115)EDITR;EGGS(0.015)KS(0.983)DS(0.002)EDITR;EGGS(0.071)KS(0.929)DSEDITR ;;; 157.54 7.30E-09 8061630000 7328780 7049620 3601870 3757420 6238450 7948360 10486700 9313900 5236980 11719400 TRUE FALSE FALSE 6815070.368 6490982.437 4996610.525 8747463.649 5455965.43 6967772.156 7862816.743 7193328.291 5690925.643 8784785.96 0.775781038 0.738889082 0.568779996 0.995751483 0.621069819 0.793163566 0.895049325 0.818839335 0.647816084 1 23.0665757 -14 0.257219575 2.461058787 0.74587553 0.244791499 0.122473046 277.6345429 2.739221105 214.5518099 0.163605144 1.00E-14 14 -1.715183256 EGGTASVATGPDS(ph)PSPVPLPPGKPALPGADGTPFGCPPGRK ddPTM_HeLa_A485_30min_R1 1 EGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGRK 41 2 Q6SPF0;F8WDT5;E9PIW9 Q6SPF0 SAMD1 Atherin 1 0 EGGTAS(0.002)VAT(0.181)GPDS(0.743)PS(0.073)PVPLPPGKPALPGADGTPFGCPPGRK 88.466 2.74E-05 320810000 64281 75023 52746 95357 95854 84728 116630 142250 68336 102670 TRUE FALSE FALSE 78580.08668 83796.28724 72258.94034 100566.1115 86310.4392 89164.22707 91711.04772 107362.9645 82050.40839 77076.2585 1.019510913 1.087186753 0.937499325 1.304761199 1.119805773 1.156831284 1.189874152 1.392944683 1.064535435 1 16.23399892 -5.25495747 24.99956016 1.189404728 1.021977775 0.299475997 0.111131593 603.6020341 2327978.171 0.029128586 0.048945227 5.56E-06 5.25495747 -0.167426953 EGGTASVATGPDS(ph)PSPVPLPPGKPALPGADGTPFGCPPGRK ddPTM_HeLa_A486_30min_R1 2 EGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGRK 41 2 Q6SPF0;F8WDT5;E9PIW9 Q6SPF0 SAMD1 Atherin 1 0 EGGTASVAT(0.003)GPDS(0.988)PS(0.009)PVPLPPGKPALPGADGTPFGCPPGRK;EGGTASVATGPDS(0.998)PS(0.002)PVPLPPGKPALPGADGTPFGCPPGRK ; 218.24 1.14E-40 1465640000 277050 271510 164438 117113 309750 284960 356510 363240 244280 340580 TRUE FALSE FALSE 257630.2257 249994.5588 228112.7974 272644.9826 270898.2667 249804.5325 267307.4272 280538.1815 265454.3871 255296.5512 1.009141034 0.979232025 0.893520873 1.067954037 1.061112128 0.978487689 1.047046762 1.098871803 1.039788379 1 17.96181452 -5.28314639 24.99772483 1.044387535 0.96249137 0.443147674 0.041663256 724.0252554 833783.6233 0.012082641 0.017939083 5.21E-06 5.28314639 -0.081896164 EGHETPMDIDS(ph)DDSK ddPTM_HeLa_A486_30min_R1 1 EGHETPMDIDSDDSK 15 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 EGHETPMDIDS(0.999)DDS(0.001)K 102.33 0.00033274 223840000 239120 260900 164440 99150 238930 284800 342320 328670 203480 377270 TRUE FALSE FALSE 222358.9228 240225.3338 228115.5719 230826.2108 208961.1715 249664.2716 256667.9153 253839.0158 221117.8102 282799.1364 0.786278649 0.849455684 0.806634613 0.816219645 0.738903146 0.882832511 0.907597946 0.897594735 0.781889977 1 18.10941819 -6.389812963 8.587836562 0.889167351 0.803689021 0.416982016 0.055649775 0.342045838 22.20140126 0.018993803 0.016729468 4.08E-07 6.389812963 -0.08547833 EGHGSSS(ph)FDR ddPTM_HeLa_A485_30min_R1 2 EGHGSSSFDR 10 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 EGHGSS(0.051)S(0.949)FDR;EGHGSS(0.038)S(0.962)FDR ; 155.66 1.41E-06 521500000 266210 556750 506130 125033 419300 305740 318070 305770 363790 246500 TRUE FALSE FALSE 325427.4961 621857.0694 693368.5488 131863.2362 377553.0197 321748.0736 250111.7461 230779.4281 436799.3161 185052.0865 1.758572423 3.360443436 3.746883172 0.712573626 2.040252703 1.738689251 1.35157485 1.247105247 2.360412813 1 17.49757188 -5.259855683 24.99990309 1.53039365 2.995814046 0.511051778 0.654406465 112.8486878 1781391.203 0.177092993 0.287124973 5.50E-06 5.259855683 1.465420396 EGHGSSS(ph)FDR ddPTM_HeLa_A486_30min_R1 2 EGHGSSSFDR 10 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 EGHGSS(0.036)S(0.964)FDR;EGHGS(0.001)S(0.097)S(0.902)FDR ; 162.93 3.82E-07 789000000 417600 412810 355470 21757.6 334730 221430 232060 234570 346060 141039 TRUE FALSE FALSE 388328.3965 380097.4322 493117.5038 50652.79237 292745.0422 194112.2179 173996.1335 181163.5316 376056.7594 105721.9164 3.673111591 3.595256737 4.664288358 0.479113453 2.769009985 1.836064125 1.645790575 1.713585393 3.557036916 1 16.68991496 -5.248685867 24.99460054 1.915260443 3.939322722 0.568013047 0.846104282 569.6798351 1116468.571 0.22052064 0.378776618 5.64E-06 5.248685867 2.024062278 EGHGSSS(ph)FDRELER ddPTM_HeLa_A485_30min_R1 2 EGHGSSSFDRELER 14 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 EGHGS(0.001)S(0.142)S(0.858)FDRELER;EGHGS(0.045)S(0.045)S(0.909)FDRELER ; 141.6 5.26E-08 1608470000 253969 436070 505570 144397 727040 378330 431040 536570 502790 323120 TRUE FALSE FALSE 310463.5279 487064.5932 692601.3815 152285.0425 654653.3448 398138.7738 338944.7827 404975.3662 603695.3411 242572.1306 1.279881275 2.00791654 2.855238893 0.627792822 2.698798676 1.641321173 1.397294825 1.669504923 2.488725064 1 17.88805428 EGHGSSS(ph)FDRELER ddPTM_HeLa_A486_30min_R1 2 EGHGSSSFDRELER 14 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 EGHGS(0.001)S(0.014)S(0.986)FDRELER;EGHGS(0.001)S(0.159)S(0.841)FDRELER ; 202.35 3.60E-22 2463500000 501710 633150 788610 36084 1051200 399280 504880 607530 606330 188360 TRUE FALSE FALSE 466542.7198 582976.8881 1093980.912 84005.37558 919348.6939 350020.8932 378553.6839 469208.6813 658887.1726 141193.43 3.304280659 4.12892362 7.748100686 0.594966604 6.511271056 2.479016858 2.68109985 3.323162284 4.666556884 1 17.10731343 EGHS(ph)PEGSTVTYHLLGPQEEGEGVVDVK ddPTM_HeLa_A485_30min_R1 1 EGHSPEGSTVTYHLLGPQEEGEGVVDVK 28 0 O75381;O75381-2 O75381 PEX14 Peroxisomal membrane protein PEX14 1 0 EGHS(0.203)PEGS(0.203)T(0.203)VT(0.203)Y(0.187)HLLGPQEEGEGVVDVK 72.22 0.0047854 219380000 77525 66023 49124 81633 46745 72665 93706 81361 45094 131030 TRUE FALSE FALSE 94770.16879 73743.81553 67297.01182 86092.40408 42090.90367 76469.62704 73684.94759 61407.08718 54143.95217 98366.63243 0.963438175 0.749683238 0.684144716 0.875219594 0.427898187 0.777393971 0.749084784 0.624267454 0.550430068 1 16.58588139 EGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_HeLa_A485_30min_R1 5 EGHSLEMENENLVENGADSDEDDNSFLK 28 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 EGHSLEMENENLVENGADS(0.999)DEDDNS(0.001)FLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(0.997)DEDDNS(0.003)FLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK ;;;; 222.36 1.69E-38 7613640000 578289 474552 456922 811380 799667 499236 747915 645301 614704 1058042 TRUE FALSE FALSE 706927.393 530046.7283 625956.4619 855703.6349 720049.3457 525375.225 588116.8503 487039.918 738069.4544 794291.6012 0.890009906 0.667320072 0.788068841 1.077316736 0.906530227 0.661438726 0.740429396 0.613175208 0.929217246 1 19.59930922 -6.239362135 24.66569695 0.761649127 0.862246833 0.050036148 0.144883684 1732.184117 1935275.204 0.048917225 0.048877297 5.76E-07 6.239362135 0.100597706 EGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_HeLa_A486_30min_R1 7 EGHSLEMENENLVENGADSDEDDNSFLK 28 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(0.998)DEDDNS(0.002)FLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK ;;;;;; 329.61 1.00E-126 6004590000 813986 1082296 939864 497658 1233861 1235567 1395178 1375466 930478 1093028.9 TRUE FALSE FALSE 756929.7848 996530.9233 1303804.511 1158572.974 1079098.648 1083135.306 1046089.708 1062302.418 1011132.582 819327.349 0.923842937 1.216279335 1.591310863 1.414053828 1.317054349 1.321981144 1.276766495 1.296554325 1.234100855 1 19.64408045 -8.419512763 1.166998217 0.999722917 1.310540565 0.234449185 0.157830083 2.36951067 4.869509821 0.160355965 0.049286917 3.81E-09 8.419512763 0.310817648 EGHSLEMENENLVENGADS(ph)DEDDNSFLKQQS(ph)PQEPK ddPTM_HeLa_A485_30min_R1 1 EGHSLEMENENLVENGADSDEDDNSFLKQQSPQEPK 36 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 2 0 EGHSLEMENENLVENGADS(0.999)DEDDNS(0.006)FLKQQS(0.996)PQEPK 187.3 1.06E-20 301600000 17155 20651 19463 18238 31311 29510 43458 46300 29295 26060 TRUE FALSE FALSE 20971.07057 23065.95481 26663.17362 19234.29576 28193.5669 31055.09797 34172.84328 34944.8524 35174.23779 19563.7216 1.071936669 1.179016717 1.362888625 0.983161392 1.441114706 1.587381921 1.746745531 1.786206792 1.797931831 1 14.25589322 -6.017415696 3.340470428 1.640074371 1.166726996 0.417049456 0.236064878 0.213892871 4.966601747 0.076254229 0.081660154 9.61E-07 6.017415696 -0.473347375 EGIPALDNFLDKL ddPTM_HeLa_A485_30min_R1 2 EGIPALDNFLDKL 13 1 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 152.14 0.00027079 7767500 22928.5 22879.3 18490 27466 28455 23220.5 34467 29564 18489.8 34171 FALSE FALSE TRUE 28028.86572 25554.83511 25330.22043 28966.39803 25621.92029 24436.28947 27102.84388 22313.38265 22200.53326 25652.79857 1.092624091 0.996181178 0.987425226 1.129171071 0.9987963 0.952577919 1.056525814 0.869822549 0.865423443 1 14.6468286 -7.261041226 24.99978485 0.900717243 1.027079097 0.443916745 0.060432346 31.23563282 1961417.517 0.030177918 0.016031832 5.48E-08 7.261041226 0.126361855 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_HeLa_A485_30min_R1 1 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGK 37 1 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALSSDFT(0.07)CGS(0.872)PT(0.057)AAGK 83.744 0.00012501 115280000 129130 89768 59466 187910 144350 99732 179920 159680 103010 225810 TRUE FALSE FALSE 157854.523 100265.5867 81464.94799 198175.0475 129978.0072 104953.8133 141478.6222 120518.2296 123683.1621 169519.7227 0.93118677 0.591468563 0.480563245 1.169038294 0.766742684 0.619124498 0.834585026 0.71093928 0.729609276 1 17.37109361 -10.52343104 2.560465367 1.014730387 0.755065715 0.135416331 0.182220312 13893498.66 13110771.28 1420297.99 0.046911131 3.00E-11 10.52343104 -0.259664672 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_HeLa_A486_30min_R1 2 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGK 37 1 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(1)PTAAGK;EGITGPPADSSKPIGPDDAIDALSSDFTCGS(0.977)PT(0.023)AAGK ; 362.02 9.68E-151 711780000 627530 672620 306580 353320 646670 776760 971100 872000 513910 961600 TRUE FALSE FALSE 583543.3876 619319.1416 425295.9865 822546.8158 565558.6186 680931.2487 728120.5088 673464.6356 558456.1326 720809.101 0.809567175 0.859199947 0.590025828 1.141143771 0.784616368 0.944676264 1.010143334 0.934317609 0.774762877 1 19.4592577 -5.254777429 24.99968003 0.935113927 0.763557899 0.342292512 0.119213939 654.5767093 2456362.758 0.031532877 0.053024926 5.56E-06 5.254777429 -0.171556028 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGKK ddPTM_HeLa_A485_30min_R1 1 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGKK 38 2 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALSSDFT(0.004)CGS(0.942)PT(0.053)AAGKK 137.52 1.99E-07 472050000 203150 143330 77739 323860 216590 215740 383740 357360 138240 418920 TRUE FALSE FALSE 248340.0166 160091.1967 106497.8911 341551.6517 195025.5391 227035.8128 301750.8141 269716.8997 165983.5 314490.9537 0.789657107 0.509048654 0.338635785 1.08604603 0.62013084 0.721915242 0.959489647 0.857630073 0.527784657 1 18.26265899 -5.252065925 24.99800336 0.811589807 0.542107351 0.308266862 0.190745022 855.5207046 2281578.292 0.051160626 0.087138324 5.60E-06 5.252065925 -0.269482456 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGKK ddPTM_HeLa_A486_30min_R1 2 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGKK 38 2 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(0.999)PT(0.001)AAGKK;EGITGPPADSSKPIGPDDAIDALS(0.001)S(0.001)DFT(0.019)CGS(0.745)PT(0.234)AAGKK ; 283.23 1.49E-79 1013020000 270197 254893 92807 177943 210100 349876 438253 378541 184260 500880 TRUE FALSE FALSE 251257.5856 234694.3504 128744.3559 414260.2967 183747.2989 306711.8564 328597.464 292355.4778 200231.8052 375456.3878 0.669205782 0.625090844 0.34290096 1.103351308 0.489397184 0.816904084 0.875194762 0.778666943 0.533302433 1 18.51828581 -5.242854985 24.99452781 0.781275579 0.553668404 0.263417185 0.192672493 1227.898101 1651422.898 0.050241018 0.086817067 5.72E-06 5.242854985 -0.227607175 EGKPEIEGKPES(ph)EGEPGSETR ddPTM_HeLa_A485_30min_R1 2 EGKPEIEGKPESEGEPGSETR 21 2 D6RD44;Q96EI5;Q96EI5-2 D6RD44 TCEAL4 Transcription elongation factor A protein-like 4 1 0 EGKPEIEGKPES(1)EGEPGSETR;EGKPEIEGKPES(1)EGEPGSETR ; 119.43 1.11E-05 2125590000 609990 463670 289160 1106450 668470 616640 1083370 1058450 433090 1415530 TRUE FALSE FALSE 745680.1711 517892.1731 396132.317 1166892.562 601914.7797 648926.3169 851899.1492 798863.4779 520007.1905 1062664.422 0.701708042 0.48735251 0.372772729 1.098081895 0.566420374 0.610659681 0.801663377 0.751755174 0.489342806 1 20.01925465 -14 0.239464207 2.895119269 0.623607773 0.210994432 0.195121923 279.8152011 2.794155979 259.1834171 0.31344387 1.00E-14 14 -2.271511496 EGKPEIEGKPES(ph)EGEPGSETR ddPTM_HeLa_A486_30min_R1 2 EGKPEIEGKPESEGEPGSETR 21 2 D6RD44;Q96EI5;Q96EI5-2 D6RD44 TCEAL4 Transcription elongation factor A protein-like 4 1 0 EGKPEIEGKPES(0.999)EGEPGS(0.001)ETR;EGKPEIEGKPES(1)EGEPGSETR ; 131.2 4.77E-07 2386300000 944890 845590 286700 655880 682870 1103900 1585350 1374090 560010 1814620 TRUE FALSE FALSE 878658.0904 778582.3688 397717.9181 1526921.786 597218.0771 967712.0416 1188678.662 1061239.703 608552.1177 1360227.341 0.645964144 0.572391354 0.292390769 1.12254896 0.439057545 0.711434047 0.873882348 0.780192892 0.447390006 1 20.37541636 -14 0.11435746 1.988750239 0.494138374 0.160679214 0.228353414 303.1705778 2.276716633 71.49669696 2.516403616 1.00E-14 14 -1.494611865 EGLELLK ddPTM_HeLa_A485_30min_R1 2 EGLELLK 7 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 114.78 0.015536 224880000 299968 276816 261136 379842 391035 307206 395541 341932 297751 517000 FALSE FALSE TRUE 366694.8467 309187.2232 357741.0732 400591.8066 352102.1824 323290.8311 311030.4341 258072.6409 357506.8946 388121.4147 0.944794162 0.796625003 0.921724645 1.032130131 0.907195968 0.832963137 0.801374061 0.6649276 0.921121281 1 18.56614851 -6.267047505 4.377431573 0.819333939 0.920651424 0.109787482 0.097808521 0.358158666 17.82358833 0.034515705 0.032093948 5.41E-07 6.267047505 0.101317485 EGLELLK ddPTM_HeLa_A486_30min_R1 2 EGLELLK 7 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 103.92 0.0099552 38877000 127797 158032 112516 61046 244032 160070 189482 185531 151260 180427 FALSE FALSE TRUE 118839.0902 145508.9688 156085.2085 142118.1731 213423.2311 140322.1909 142071.5995 143289.6414 164371.3386 135246.9048 0.878682513 1.075876516 1.154076012 1.050805364 1.578026731 1.037526079 1.050461004 1.059467066 1.215342701 1 17.04523605 -4.233381511 1.943275307 1.151542328 0.782337058 0.200349497 0.158386584 1.394670634 5.268757613 0.043225023 0.947519334 5.84E-05 4.233381511 -0.369205271 EGLELPEDEEEK(ac)KK ddPTM_HeLa_A485_30min_R1 2 EGLELPEDEEEKKK 14 2 P08238;Q58FF7;P07900;P07900-2;Q58FG0 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 1 ; EGLELPEDEEEK(0.638)K(0.362)K;EGLELPEDEEEK(0.5)K(0.5)K 146 3.72E-05 53971000 50545 29424 39636 121500 61381 48186 120013 79203 43842 263930 FALSE TRUE FALSE 61788.56087 32864.88085 54299.00579 128137.2373 55269.69212 50708.94445 94371.24213 59778.34006 52640.68726 198137.1083 0.311847495 0.165869388 0.274047634 0.64670994 0.278946698 0.255928558 0.476292619 0.30170189 0.265678084 1 17.59613958 -10.93658208 2.472963326 1.46464588 0.333251868 0.709281768 0.128524851 61705748.07 29889857.74 165290550.9 0.034183367 1.16E-11 10.93658208 -1.131394012 EGLELPEDEEEK(ac)KK ddPTM_HeLa_A486_30min_R1 1 EGLELPEDEEEKKK 14 2 P08238;Q58FF7;P07900;P07900-2;Q58FG0 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 1 EGLELPEDEEEK(0.644)K(0.356)K 144.68 4.17E-05 32906000 16392 21445 18224 14740 24333 28429 54490 39314 18588 81624 FALSE TRUE FALSE 15243.00545 19745.6201 25280.82086 34315.46492 21280.92824 24921.71902 40856.02566 30363.06042 20199.22281 61184.81912 0.249130514 0.322720903 0.413187801 0.560849332 0.347813862 0.407318668 0.667747756 0.496251535 0.330134551 1 15.90088612 -14 0.186821896 3.365384171 0.323575585 0.699314593 0.115043898 79.8203963 0.776984224 70.40134602 0.342080259 1.00E-14 14 -3.041808586 EGLELPEDEEEKK(ac)K ddPTM_HeLa_A486_30min_R1 1 EGLELPEDEEEKKK 14 2 P08238;Q58FF7;P07900;P07900-2;Q58FG0 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 1 EGLELPEDEEEK(0.071)K(0.929)K 147.35 3.26E-05 38166000 22243 25197 19960 20857 26452 38475 70174 53161 22237 110540 FALSE TRUE FALSE 20683.88056 23200.29795 27689.04655 48556.15005 23134.1435 33728.34569 52615.72298 41057.4008 24164.52106 82860.06451 0.249624239 0.279993723 0.334166365 0.586001837 0.279195335 0.407051888 0.634994956 0.495502882 0.291630488 1 16.33838932 -14 0.180509809 3.400423545 0.28230385 0.679493707 0.126022925 81.25071729 0.782660617 70.15838283 0.403765235 1.00E-14 14 -3.118119695 EGLISQDGS(ph)SLEALLR ddPTM_HeLa_A486_30min_R1 1 EGLISQDGSSLEALLR 16 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 EGLIS(0.046)QDGS(0.567)S(0.388)LEALLR 82.259 0.0015129 0 10788 11708 12402 6713.4 14745 12197 14810 12630 7438.9 12920 TRUE FALSE FALSE 10031.81691 10780.21544 17204.38654 15629.13448 12895.54461 10692.25815 11104.38136 9754.424711 8083.709842 9684.747905 1.035836659 1.113112654 1.776441339 1.613788467 1.331531263 1.104030611 1.146584451 1.007194488 0.834684591 1 13.24149878 -6.589388334 1.489299543 0.961132936 1.395266306 0.4252357 0.211444428 0.43382391 1.959520659 0.124980841 0.086613637 2.57E-07 6.589388334 0.43413337 EGLISQDGSS(ph)LEALLR ddPTM_HeLa_A485_30min_R1 1 EGLISQDGSSLEALLR 16 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 EGLIS(0.001)QDGS(0.133)S(0.866)LEALLR 131.48 3.31E-07 0 28570 41025 40647 32621 48207 37297 44531 49986 32074 47600 TRUE FALSE FALSE 34925.29793 45822.51688 55684.01676 34403.00263 43407.34181 39249.81325 35016.58807 37726.85512 38510.9576 35734.19601 0.977363473 1.282315597 1.558283744 0.962747353 1.214728374 1.098382436 0.979918173 1.055763368 1.077706004 1 15.12501771 -5.904882428 1.302712088 1.039825746 1.246616128 0.201634581 0.158049841 0.683796112 2.428434436 0.067148059 0.083089848 1.24E-06 5.904882428 0.206790382 EGLISQDGSS(ph)LEALLR ddPTM_HeLa_A486_30min_R1 2 EGLISQDGSSLEALLR 16 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 EGLISQDGS(0.023)S(0.977)LEALLR;EGLISQDGS(0.25)S(0.75)LEALLR ; 236.27 2.46E-41 19829000 97754 107015 93151 42803 114125 93599 119522 118828 103339 121504 TRUE FALSE FALSE 90901.9494 98534.74166 129221.5619 99647.54714 99810.37833 82051.70702 89616.33143 91773.4584 112296.5077 91078.60754 0.998060377 1.081864823 1.418791584 1.094082901 1.09587071 0.900888905 0.9839449 1.007629133 1.232962501 1 16.47482461 -5.796719937 3.013430881 1.022898106 1.166859999 0.163207789 0.128806392 0.438012417 8.151430343 0.043248287 0.052798907 1.60E-06 5.796719937 0.143961893 EGLLLWCQR ddPTM_HeLa_A485_30min_R1 1 EGLLLWCQR 9 0 O43707;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;A0A494C166;A0A494C033;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 116.73 0.027138 97966000 108680 120900 117860 112390 146050 119440 138050 150430 118250 151130 FALSE FALSE TRUE 132855.4911 135038.2033 161461.3186 118529.5811 131508.7492 125693.6937 108554.4897 113536.8066 141981.6903 113456.0723 1.170986165 1.190224556 1.423117469 1.044717825 1.159116004 1.107862198 0.95679753 1.000711591 1.251424339 1 16.7917743 -5.29717477 24.98934698 1.074432302 1.254321008 0.411553632 0.102399313 582.3205322 407208.7286 0.029150848 0.043239043 5.04E-06 5.29717477 0.179888706 EGLLLWCQR ddPTM_HeLa_A486_30min_R1 2 EGLLLWCQR 9 0 O43707;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;A0A494C166;A0A494C033;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 ; ; 133.55 0.0091074 256714000 254150 281480 242070 125204 380810 241550 287590 302430 229767 272870 FALSE FALSE TRUE 236335.3974 259174.4997 335805.9869 291481.2395 333045.2589 211750.0169 215631.9402 233573.291 249683.3886 204541.5759 1.155439408 1.267099359 1.641749289 1.425046415 1.628252141 1.035241935 1.054220587 1.141935521 1.220697491 1 17.6420346 -6.27714809 24.92270452 1.097027651 1.427036388 0.559335922 0.14775433 647.6720466 1027563.036 0.054933218 0.048604298 5.28E-07 6.27714809 0.330008737 EGLSGDALSSPSAPEPVVGT(ph)PDDKLDADYIKR ddPTM_HeLa_A485_30min_R1 2 EGLSGDALSSPSAPEPVVGTPDDKLDADYIKR 32 2 K7EJ08;Q92503-3;Q92503;Q92503-2 K7EJ08 SEC14L1 SEC14-like protein 1 1 0 EGLSGDALSSPSAPEPVVGT(0.998)PDDKLDADY(0.002)IKR;EGLSGDALSSPSAPEPVVGT(0.999)PDDKLDADY(0.001)IKR ; 90.898 0.00023507 851100000 130851 91493 57684 158939 115789 113261 188527 169102 79273 215730 TRUE FALSE FALSE 159958.3535 102192.3105 79023.71203 167621.4351 104260.6406 119191.1708 148246.6663 127629.4694 95182.36396 161952.4812 0.987686958 0.63100182 0.487943818 1.03500381 0.643773036 0.735963845 0.915371381 0.788067391 0.587717849 1 17.30521105 -10.44159585 3.439354594 1.002913157 0.755138672 0.156331676 0.169341307 75354901.48 122558648.7 2202580.01 0.041300916 3.62E-11 10.44159585 -0.247774486 EGLSNKVS(ph)VK ddPTM_HeLa_A486_30min_R1 2 EGLSNKVSVK 10 1 E7EPJ7;O75962-4;O75962;O75962-2;O75962-3 E7EPJ7 TRIO Triple functional domain protein 1 0 EGLS(0.006)NKVS(0.994)VK;EGLS(0.078)NKVS(0.922)VK ; 56.482 0.017875 551200000 1151530 875570 202760 624580 485780 1204330 1652970 1916170 524150 1304920 TRUE FALSE FALSE 1070813.694 806186.6444 281274.1021 1454053.805 424848.9427 1055752.009 1239379.423 1479899.921 569583.744 978159.5384 1.094722948 0.824187275 0.287554423 1.486520089 0.43433502 1.079324965 1.267052433 1.512943301 0.582301477 1 19.89971026 -6.497146065 24.48155657 1.139015247 0.824694027 0.1021091 0.379117382 1159.715616 1103332.265 0.129181368 0.113466475 3.18E-07 6.497146065 -0.31432122 EGMNIVEAMER ddPTM_HeLa_A485_30min_R1 4 EGMNIVEAMER 11 0 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 0 ;;; ;;; 124.42 0.00033552 146333000 194310 337580 444311 179060 307037 369528 256772 329791 379622 252001 FALSE FALSE TRUE 237533.5891 377057.0444 608680.1282 188841.5944 276467.3182 388875.9147 201910.5646 248909.2402 455808.6533 189181.7884 1.255583802 1.993093773 3.21743511 0.998201761 1.46138442 2.055567388 1.067283306 1.315714595 2.409368561 1 17.52941369 -5.31312363 24.99978663 1.492604754 2.139154244 0.203340784 0.618252652 562.200603 271936.4662 0.174264061 0.25847568 4.86E-06 5.31312363 0.64654949 EGMNIVEAMER ddPTM_HeLa_A486_30min_R1 5 EGMNIVEAMER 11 0 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 0 ;;;; ;;;; 167.18 4.11E-09 176361000 265398 370875 321779 135475.8 628322 339677 361245 370000 326559 323626 FALSE FALSE TRUE 246794.9707 341485.5143 446380.4463 315394.509 549511.9959 297771.1053 270857.6801 285759.077 354865.3971 242587.9431 1.017342278 1.407677191 1.840076801 1.30012442 2.265207367 1.227476937 1.116533974 1.177960757 1.462831963 1 17.88814832 -6.478996435 24.99999118 1.199566878 1.576592353 0.24024419 0.328304572 683.055849 389141.0133 0.115270121 0.101652832 3.32E-07 6.478996435 0.377025475 EGMNPS(ph)YDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A485_30min_R1 1 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 2 0 EGMNPS(0.998)Y(0.002)DEYADS(1)DEDQHDAYLER 148.63 2.51E-09 543680000 120330 140560 141750 176100 191070 148690 154880 151920 137460 209790 TRUE FALSE FALSE 147096.9934 156997.2693 194189.2237 185719.8971 172046.3999 156475.1785 121788.6227 114661.3818 165046.9611 157493.2139 0.933989406 0.99685101 1.233000578 1.179224758 1.092405162 0.993536005 0.773294415 0.728040142 1.047962366 1 17.26493014 -6.525319415 4.226002495 0.864810902 1.092640004 0.37856727 0.118762904 0.206485916 8.871333148 0.047862128 0.038502352 2.98E-07 6.525319415 0.227829101 EGMNPS(ph)YDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A486_30min_R1 1 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 2 0 EGMNPS(0.999)Y(0.001)DEYADS(1)DEDQHDAYLER 179.2 2.30E-20 582860000 220100 252040 218030 95260 275480 268060 273990 255510 226710 258820 TRUE FALSE FALSE 204672.1266 232067.4325 302457.055 221770.0942 240926.7297 234989.4826 205434.804 197335.9507 246361.4053 194009.7874 1.054957739 1.196163532 1.558978334 1.143087146 1.241827708 1.211224886 1.058888868 1.017144307 1.269840087 1 17.56576991 -6.649264755 4.501606537 1.088328772 1.247097772 0.212622398 0.139488916 0.351222213 12.21308177 0.056429094 0.042737835 2.24E-07 6.649264755 0.158769 EGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A485_30min_R1 14 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPS(0.079)Y(0.04)DEY(0.129)ADS(0.752)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER ;;;;;;;;;;;;; 348.83 9.74E-142 1.05E+11 7409707 8761109 9122371 7877218 11669414 8852886 10397211 9958032 8808270 9734353 TRUE FALSE FALSE 9057970.759 9785644.486 12497115.65 8307530.473 10507566.17 9316409.422 8175761.932 7515809.038 10576008.99 7307757.945 1.239500655 1.339076165 1.710116255 1.136809749 1.437864561 1.274865628 1.118778426 1.028469894 1.447230337 1 22.80099742 -6.5521138 4.014884792 1.152499879 1.375906789 0.257713292 0.178813626 0.310653611 11.16437714 0.068837158 0.054088321 2.80E-07 6.5521138 0.22340691 EGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A486_30min_R1 19 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER ;;;;;;;;;;;;;;;;;; 351.64 7.87E-142 1.25E+11 10478576 12116030 10402510 3712409 13960580 11391350 12522877 12919960 10406179 10924902 TRUE FALSE FALSE 9744081.934 11155911.66 14430640.46 8642675.767 12209513.88 9986001.056 9389520.721 9978367.149 11308194.97 8189235.43 1.189864673 1.362265348 1.762147466 1.05537029 1.490922319 1.219405785 1.146568663 1.218473597 1.380860896 1 22.96529733 -6.388853907 7.573495475 1.201822149 1.375343757 0.175348105 0.193933122 0.525385644 29.98302137 0.067539727 0.059435114 4.08E-07 6.388853907 0.173521609 EGMS(ph)PAKR ddPTM_HeLa_A485_30min_R1 2 EGMSPAKR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 EGMS(1)PAKR;EGMS(1)PAKR ; 66.595 0.011663 691350000 487860 527300 287910 656310 449430 542620 646570 682970 360360 791470 TRUE FALSE FALSE 596382.7739 588963.1481 394419.8899 692162.5534 404683.1712 571030.7442 508425.0375 515470.5366 432680.9466 594171.0949 1.003722293 0.991234937 0.663815344 1.164921282 0.68108862 0.961054398 0.855687935 0.86754563 0.72820935 1 19.1805189 -4.568033299 24.99818519 0.865077139 1.000604177 0.117487698 0.145092099 218.1847303 120789.2502 0.033961346 0.089853351 2.70E-05 4.568033299 0.135527038 EGMS(ph)PAKR ddPTM_HeLa_A486_30min_R1 1 EGMSPAKR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 EGMS(1)PAKR 63.624 0.015652 262590000 235830 252550 98599 91093 168280 259000 270680 237660 196170 373810 TRUE FALSE FALSE 219299.5348 232537.0182 136779.1734 212069.1076 147172.7533 227047.2133 202953.001 183550.0061 213174.1735 280205.5429 0.782638104 0.829880151 0.488138714 0.756834092 0.525231413 0.810288087 0.724300451 0.655054872 0.760777861 1 18.09612597 -8.118493344 4.729223273 0.999985123 0.695427413 0.413781339 0.108205165 0.831157189 31.87501622 0.101761982 0.026559234 7.61E-09 8.118493344 -0.30455771 EGNTTEDDFPSS(ph)PGNGNK ddPTM_HeLa_A485_30min_R1 4 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPS(0.034)S(0.966)PGNGNK;EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPSS(1)PGNGNK ;;; 445.17 2.60E-203 4454880000 3836140 3577660 2716750 5237870 4771830 4320110 6456430 6300310 3492090 6918590 TRUE FALSE FALSE 4689476.108 3996036.215 3721788.878 5524001.575 4296729.85 4546304.279 5076960.986 4755149.094 4192920.432 5193912.84 0.902879246 0.769369132 0.71656745 1.063552998 0.827262602 0.875313934 0.9774829 0.915523468 0.807275856 1 22.30839037 -5.238919281 24.99872176 0.916450778 0.793581672 0.317968833 0.085073304 999.9765273 1110035.255 0.022614294 0.039130711 5.77E-06 5.238919281 -0.122869105 EGNTTEDDFPSS(ph)PGNGNK ddPTM_HeLa_A486_30min_R1 5 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPSS(1)PGNGNK;EGNTTEDDFPS(0.01)S(0.99)PGNGNK;EGNTTEDDFPS(0.076)S(0.924)PGNGNK ;;;; 521.11 2.18E-304 4624530000 5102719 5008541 2646652 2339082 4983668 5670560 7006650 6592340 3992212 7343150 TRUE FALSE FALSE 4745044.749 4611645.97 3671506.534 5445501.107 4358569.889 4970983.961 5253512.061 5091408.092 4338260.151 5504377.444 0.862049305 0.83781427 0.667015765 0.989303725 0.79183703 0.903096492 0.954424386 0.924974376 0.788147287 1 22.39214797 -5.274609619 24.92734132 0.901236752 0.793845217 0.298810623 0.082664476 984.6369109 1863622.451 0.022813165 0.034078311 5.31E-06 5.274609619 -0.107391535 EGPDLDRPGS(ph)DR ddPTM_HeLa_A485_30min_R1 2 EGPDLDRPGSDR 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 EGPDLDRPGS(1)DR;EGPDLDRPGS(1)DR ; 138.01 4.44E-06 3562100000 2345760 3034100 2458710 2424930 2437420 2681300 3055900 2886000 2181620 2741660 TRUE FALSE FALSE 2867566.219 3388911.602 3368289.144 2557397.786 2194741.906 2821688.722 2402982.001 2178203.975 2619451.123 2058214.619 1.393229935 1.64652975 1.636510165 1.242532126 1.066332873 1.370939987 1.167507984 1.058297787 1.272681235 1 20.972962 -5.350622448 4.795892941 1.169743865 1.56663888 0.68893724 0.120855643 0.121285233 4.73796657 0.033752605 0.051211004 4.46E-06 5.350622448 0.396895015 EGPDLDRPGS(ph)DR ddPTM_HeLa_A486_30min_R1 3 EGPDLDRPGSDR 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 EGPDLDRPGS(1)DR;EGPDLDRPGS(1)DR;EGPDLDRPGS(1)DR ;; 109.07 0.00022242 3387650000 4022320 4470090 2704860 1070572 3279740 3672080 3769820 3415460 3550620 4635680 TRUE FALSE FALSE 3740376.139 4115863.789 3752254.231 2492345.72 2868364.427 3219056.105 2826571.163 2637834.317 3858390.6 3474875.555 1.076405782 1.184463652 1.07982406 0.717247476 0.825458173 0.926380256 0.813430904 0.759116197 1.110367994 1 21.72852988 -5.102372059 6.349092714 0.866439174 1.130878933 0.481169691 0.111901261 0.178487383 9.33753841 0.029552658 0.051999615 7.90E-06 5.102372059 0.26443976 EGPDLDRPGS(ph)DRQER ddPTM_HeLa_A485_30min_R1 2 EGPDLDRPGSDRQER 15 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 EGPDLDRPGS(1)DRQER;EGPDLDRPGS(1)DRQER ; 178.43 7.03E-16 884040000 447230 502050 705270 688400 1342770 768780 1120310 1373210 845740 1113130 TRUE FALSE FALSE 546714.7706 560760.3802 966178.7217 726005.5489 1209079.104 809032.132 880946.6164 1036428.094 1015472.26 835647.1766 0.654241151 0.671049213 1.156204136 0.868794354 1.446877507 0.968150381 1.054208811 1.240269965 1.215192594 1 19.67253442 -4.758225989 24.88014507 1.12240696 0.662644947 0.584171795 0.153887758 49.328256 381912.3078 0.038473429 0.093351818 1.74E-05 4.758225989 -0.459762013 EGPDLDRPGS(ph)DRQER ddPTM_HeLa_A486_30min_R1 2 EGPDLDRPGSDRQER 15 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 EGPDLDRPGS(1)DRQER;EGPDLDRPGS(1)DRQER ; 174.82 6.70E-13 1722820000 631410 783680 888260 461800 1659060 999170 1279960 1466980 806830 817300 TRUE FALSE FALSE 587151.4196 721578.3427 1232218.06 1075093.738 1450965.225 875902.5642 959700.47 1132980.678 876766.674 612642.7603 0.958391183 1.177812568 2.011315795 1.754846067 2.368370801 1.429711768 1.566492795 1.849333333 1.431122231 1 19.22468654 -4.617176461 5.660340613 1.719905455 1.010914282 0.324646373 0.351916027 0.193743503 9.153013611 0.087361259 0.241179992 2.41E-05 4.617176461 -0.708991173 EGPEPPEEVPPPTT(ph)PPVPK ddPTM_HeLa_A485_30min_R1 1 EGPEPPEEVPPPTTPPVPK 19 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 EGPEPPEEVPPPT(0.027)T(0.973)PPVPK 163.91 2.20E-13 0 143240 120280 82128 192250 157900 127460 175840 152820 123770 266350 TRUE FALSE FALSE 175103.2438 134345.6997 112510.5648 202752.1307 142178.9216 134133.6085 138270.3475 115340.6554 148609.5037 199953.8468 0.875718305 0.671883546 0.562682672 1.013994649 0.711058696 0.670822846 0.691511315 0.576836391 0.743219028 1 17.60930751 -8.043589349 22.99270774 1.000000002 0.717672959 0.298327948 0.12714621 4763.785175 2512819.606 0.123406608 0.031863449 9.05E-09 8.043589349 -0.282327043 EGPET(ph)PPRPR ddPTM_HeLa_A485_30min_R1 2 EGPETPPRPR 10 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 EGPET(1)PPRPR;EGPET(1)PPRPR ; 111.52 0.00080094 751190000 346620 417770 351420 369420 504840 389940 503720 579960 374090 532550 TRUE FALSE FALSE 423724.4232 466624.5674 481424.8818 389600.4792 454576.357 410356.6554 396096.107 437723.9007 449166.4316 399795.0859 1.059854006 1.167159337 1.204179088 0.97450042 1.137023373 1.026417457 0.990747813 1.094870638 1.123491627 1 18.60890121 -5.253332673 24.99461478 1.053758886 1.146073659 0.32354717 0.062153327 755.3538367 2328901.564 0.016883209 0.028640248 5.58E-06 5.253332673 0.092314773 EGPET(ph)PPRPR ddPTM_HeLa_A486_30min_R1 1 EGPETPPRPR 10 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 EGPET(1)PPRPR 83.314 0.0024143 0 61823 69367 56742 24688 69400 64906 70749 67892 53426 73423 TRUE FALSE FALSE 57489.52695 63870.10629 78714.022 57474.91166 60695.20487 56898.55764 53046.85189 52434.47367 58057.0087 55037.4029 1.044553775 1.160485469 1.430191431 1.044288223 1.102799218 1.03381618 0.963832759 0.952706176 1.054864613 1 15.74812477 -5.821389373 1.725853795 0.997450889 1.200420353 0.40058929 0.101245239 0.356842707 2.19630235 0.037802738 0.047958995 1.51E-06 5.821389373 0.202969464 EGPGEEHFEDMAS(ph)DEDMKPK ddPTM_HeLa_A485_30min_R1 1 EGPGEEHFEDMASDEDMKPK 20 1 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 0 EGPGEEHFEDMAS(1)DEDMKPK 125.62 3.92E-07 89888000 114680 109040 90795 208400 150820 117010 200940 158940 109950 288320 TRUE FALSE FALSE 140190.1704 121791.2795 124383.8488 219784.3643 135803.8312 123136.4627 158007.5275 119959.7158 132015.9565 216447.1301 0.647687822 0.562683734 0.574661575 1.015418242 0.627422647 0.568898569 0.730005186 0.554221789 0.609922416 1 17.72365515 -10.42329913 3.012060838 1.006262183 0.656061108 0.385825084 0.1307433 29572096.46 36207263.06 1594970.508 0.033975622 3.77E-11 10.42329913 -0.350201075 EGPGEEHFEDMAS(ph)DEDMKPK ddPTM_HeLa_A486_30min_R1 1 EGPGEEHFEDMASDEDMKPK 20 1 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 0 EGPGEEHFEDMAS(1)DEDMKPK 223.15 1.16E-35 127580000 148850 162780 90562 122360 143610 217900 264720 246020 122950 294680 TRUE FALSE FALSE 138416.3837 149880.72 125630.0317 284860.2637 125597.0947 191017.7134 198484.2561 190006.6166 133607.405 220890.21 0.62662978 0.678530388 0.568744227 1.289601127 0.568595117 0.864763149 0.898565202 0.860185776 0.60485888 1 17.75296995 EGPLGWSSDGSLGSVLLDSPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 EGPLGWSSDGSLGSVLLDSPSSPR 24 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 EGPLGWSSDGSLGSVLLDS(0.002)PS(0.499)S(0.499)PR 142.04 3.06E-09 21225000 23329 25089 22477 8559.5 28596 21146 24508 22414 21068 21657 TRUE FALSE FALSE 21693.75757 23100.85627 31180.69635 19926.94857 25009.22303 18537.22152 18375.83918 17310.82149 22894.1912 16233.94624 1.336320649 1.422996968 1.920709598 1.227486422 1.540551057 1.141880184 1.131939142 1.06633478 1.410266541 1 13.98672612 -6.265027971 24.15055073 1.153095967 1.49529929 0.429252857 0.195684242 194.3209575 1307737.315 0.06691444 0.061346503 5.43E-07 6.265027971 0.342203323 EGPLPAARPAGAT(ph)LER ddPTM_HeLa_A485_30min_R1 3 EGPLPAARPAGATLER 16 1 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 EGPLPAARPAGAT(1)LER;EGPLPAARPAGAT(1)LER;EGPLPAARPAGAT(1)LER ;; 148.2 7.35E-08 1087280000 395863 413495 260374 355009 327109 459462 572080 549000 332823 708600 TRUE FALSE FALSE 483921.3586 461849.6433 356697.1777 374402.2427 294540.8794 483518.7199 449850.4345 414356.8892 399617.5233 531959.0608 0.909696618 0.868205239 0.670535017 0.703817775 0.553690878 0.90893972 0.845648599 0.778926274 0.751218567 1 19.0209557 -10.53449131 9.544368105 1.000008164 0.77358234 0.279580139 0.107406961 1.98E-05 9.68E-07 0.110601225 0.026823771 2.92E-11 10.53449131 -0.226425824 EGPLPAARPAGAT(ph)LER ddPTM_HeLa_A486_30min_R1 2 EGPLPAARPAGATLER 16 1 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 EGPLPAARPAGAT(1)LER;EGPLPAARPAGAT(1)LER ; 130.01 1.92E-05 952760000 269250 271770 256900 85619 389740 263710 309640 292050 315240 390280 TRUE FALSE FALSE 250376.9654 250233.9554 356378.56 199325.3589 340855.175 231176.1414 232164.797 225556.5904 342565.257 292551.3477 0.855839385 0.855350548 1.218174392 0.681334612 1.165112305 0.790207064 0.793586489 0.770998295 1.170957713 1 18.15833034 EGPLPAARPAGAT(ph)LERPK ddPTM_HeLa_A485_30min_R1 2 EGPLPAARPAGATLERPK 18 2 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 EGPLPAARPAGAT(1)LERPK;EGPLPAARPAGAT(1)LERPK ; 143.91 5.29E-08 784860000 746550 596700 267100 766790 465030 705480 1018470 894470 467770 1375310 TRUE FALSE FALSE 912617.4719 666478.8744 365911.405 808677.7961 418729.9804 742417.8419 800865.5644 675099.83 561647.1484 1032470.528 0.883916245 0.645518547 0.354403729 0.783245404 0.405561194 0.719069283 0.775678862 0.653868379 0.54398371 1 19.97766917 -6.432631324 24.90795488 0.719288019 0.606286534 0.098786941 0.181840069 171.2512107 47258.12625 0.062746544 0.055337239 3.69E-07 6.432631324 -0.113001485 EGPLPAARPAGAT(ph)LERPK ddPTM_HeLa_A486_30min_R1 2 EGPLPAARPAGATLERPK 18 2 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 EGPLPAARPAGAT(1)LERPK;EGPLPAARPAGAT(1)LERPK ; 156.74 1.05E-08 494000000 580100 523590 360470 194015 708480 598050 689830 625460 562150 977690 TRUE FALSE FALSE 539437.9856 482098.8215 500053.6377 451676.725 619615.8321 524268.6715 517227.2377 483056.4117 610877.6146 732870.0603 0.73606225 0.657823054 0.682322372 0.616312153 0.845464791 0.715363746 0.705755721 0.659129685 0.833541507 1 19.4831979 -8.023667092 3.76085017 0.999581509 0.703181756 0.720314311 0.058154217 0.10946168 4.309416789 0.056898829 0.015001073 9.47E-09 8.023667092 -0.296399753 EGPPAPPPVKPPPS(ph)PVNIR ddPTM_HeLa_A485_30min_R1 4 EGPPAPPPVKPPPSPVNIR 19 1 Q8TF74-2;Q8TF74 Q8TF74-2 WIPF2 WAS/WASL-interacting protein family member 2 1 0 EGPPAPPPVKPPPS(1)PVNIR;EGPPAPPPVKPPPS(1)PVNIR;EGPPAPPPVKPPPS(1)PVNIR;EGPPAPPPVKPPPS(1)PVNIR ;;; 185.7 1.64E-18 3282380000 2756290 3232890 2572320 2754580 3504580 3418410 3703890 3990260 2528880 3935270 TRUE FALSE FALSE 3369417.201 3610948.363 3523928.211 2905055.73 3155651.71 3597392.662 2912523.644 3011642.479 3036403.02 2954279.612 1.140520751 1.222277116 1.192821491 0.98333811 1.068162843 1.217688619 0.985865939 1.019416871 1.027798116 1 21.49437495 -5.031098978 0.31130605 0.992611953 1.283989741 0.388586945 0.072680494 5.079321465 0.578416145 0.089956695 0.542108894 9.31E-06 5.031098978 0.291377788 EGPPAPPPVKPPPS(ph)PVNIR ddPTM_HeLa_A486_30min_R1 3 EGPPAPPPVKPPPSPVNIR 19 1 Q8TF74-2;Q8TF74 Q8TF74-2 WIPF2 WAS/WASL-interacting protein family member 2 1 0 EGPPAPPPVKPPPS(1)PVNIR;EGPPAPPPVKPPPS(1)PVNIR;EGPPAPPPVKPPPS(1)PVNIR ;; 173.36 3.78E-13 2386280000 1805860 2304900 1564480 795060 2391630 1948970 2129800 2033830 1589380 2007750 TRUE FALSE FALSE 1679278.539 2122251.33 2170288.554 1850939.86 2091649.464 1708525.897 1596901.513 1570771.307 1727148.738 1504996.332 1.115802414 1.410137211 1.44205571 1.22986337 1.389803696 1.135235921 1.061066715 1.043704409 1.147609932 1 20.52132854 -6.411410445 4.158552719 1.069649823 1.324125173 0.619792024 0.094998757 0.156233238 4.591328478 0.034453831 0.029779284 3.88E-07 6.411410445 0.254475351 EGPSCPS(ph)PGPFCR ddPTM_HeLa_A485_30min_R1 2 EGPSCPSPGPFCR 13 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 EGPS(0.202)CPS(0.798)PGPFCR;EGPSCPS(1)PGPFCR ; 131.69 0.0001007 268800000 247290 245950 276910 326320 399360 272980 340090 372720 291190 446160 TRUE FALSE FALSE 302298.8074 274711.713 379350.5322 344146.0353 359598.3162 287272.8107 267426.9932 281309.8356 349629.162 334940.523 0.90254474 0.820180582 1.132590732 1.027484021 1.073618423 0.857683054 0.798431288 0.839879968 1.04385447 1 18.35354541 -6.280170118 24.42765347 0.891116097 0.991639499 0.12383253 0.106172863 1192.509138 1555202.839 0.039467513 0.03487396 5.25E-07 6.280170118 0.100523402 EGPSCPS(ph)PGPFCR ddPTM_HeLa_A486_30min_R1 3 EGPSCPSPGPFCR 13 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 EGPS(0.001)CPS(0.999)PGPFCR;EGPS(0.001)CPS(0.999)PGPFCR;EGPSCPS(1)PGPFCR ;; 162.93 8.47E-12 717490000 336150 440420 381870 191266 524810 461800 512170 542400 375510 456830 TRUE FALSE FALSE 312587.6209 405519.5152 529740.2908 445276.914 458983.4361 404827.8112 384019.6488 418907.3605 408059.5091 342436.7945 0.912833042 1.184217122 1.546972461 1.300318544 1.340344973 1.182197175 1.121432203 1.223312936 1.191634531 1 18.3854782 -6.449093485 6.62248577 1.152487126 1.271084427 0.112605259 0.157620083 0.60996529 45.52224133 0.059249072 0.051832107 3.56E-07 6.449093485 0.118597301 EGPVAS(ph)PPFMDLEQAVLPAVIPK ddPTM_HeLa_A485_30min_R1 1 EGPVASPPFMDLEQAVLPAVIPK 23 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EGPVAS(1)PPFMDLEQAVLPAVIPK 49.618 0.022116 8656900 10725 10894 8498.7 11411 14691 11821 14231 15619 8429.8 15185 TRUE FALSE FALSE 13110.73925 12167.95853 11642.72279 12034.35404 13228.31246 12439.92928 11190.43059 11788.41576 10121.58354 11399.65896 1.150099253 1.067396716 1.021322027 1.055676672 1.160413 1.091254513 0.981646086 1.034102494 0.887884767 1 13.47670304 -6.765985113 10.48569168 0.978680184 1.088356161 0.542205639 0.051761129 0.117565058 198.0962141 0.021477261 0.01530474 1.71E-07 6.765985113 0.109675977 EGPYSISVLYGDEEVPR ddPTM_HeLa_A485_30min_R1 1 EGPYSISVLYGDEEVPR 17 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 278.46 1.58E-68 0 9728.8 13033 11729 10328 17868 9508 16548 14470 12326 17231 FALSE FALSE TRUE 11892.938 14557.09598 16068.04518 10892.19249 16088.99918 10005.82418 13012.38462 10921.20981 14799.71514 12935.62881 0.919393882 1.125348925 1.242154163 0.842030383 1.24377403 0.773508913 1.005933674 0.844273593 1.14410481 1 13.65906257 -6.260457304 24.99999255 0.947104397 1.073757638 0.140122144 0.149408131 176.223943 4486048.916 0.048326159 0.045683565 5.49E-07 6.260457304 0.126653241 EGPYSISVLYGDEEVPRS(ph)PFK ddPTM_HeLa_A485_30min_R1 1 EGPYSISVLYGDEEVPRSPFK 21 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 EGPYSISVLYGDEEVPRS(1)PFK 259.33 3.32E-59 1930600000 541970 358740 282350 661730 571350 458370 583310 623930 400220 981870 TRUE FALSE FALSE 662529.3567 400691.5224 386803.0146 697878.6343 514464.3879 482369.5444 458681.0533 470910.1892 480540.483 737107.879 0.898822785 0.543599565 0.524757672 0.946779507 0.697949924 0.654408341 0.622271266 0.638861967 0.651926939 1 19.49151625 -10.12611876 5.023969165 1.00001297 0.681375357 0.343601659 0.129770506 1.88E-05 3.27E-06 0.125432786 0.030420681 7.48E-11 10.12611876 -0.318637613 EGPYSISVLYGDEEVPRS(ph)PFK ddPTM_HeLa_A486_30min_R1 2 EGPYSISVLYGDEEVPRSPFK 21 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 EGPYSISVLYGDEEVPRS(1)PFK;EGPYSISVLYGDEEVPRS(1)PFK ; 262.63 2.38E-59 3707400000 1090430 967780 449450 486010 945430 1054040 1263190 1275740 678350 1313510 TRUE FALSE FALSE 1013996.488 891089.5882 623489.0767 1131455.842 826845.3536 924003.2615 947126.5013 985281.8512 737149.9242 984598.5465 1.029857795 0.90502834 0.633241923 1.149154491 0.839779174 0.938456861 0.961941803 1.000693993 0.748680695 1 19.90917608 -5.271132041 24.98279495 0.944041351 0.86094124 0.089489202 0.134210197 1855.198958 4781764.503 0.036945778 0.05556727 5.36E-06 5.271132041 -0.083100111 EGPYSISVLYGDEEVPRS(ph)PFKVK ddPTM_HeLa_A485_30min_R1 1 EGPYSISVLYGDEEVPRSPFKVK 23 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 EGPYSISVLYGDEEVPRS(1)PFKVK 185.06 3.37E-21 245040000 36619 56316 24744 28524 82861 96620 143780 305060 33443 40881 TRUE FALSE FALSE 44764.77022 62901.66632 33897.83528 30082.19389 74611.0679 101678.8738 113060.2284 230243.5567 40154.70334 30690.11906 1.458605297 2.049573877 1.104519511 0.980191502 2.431110409 3.313081764 3.683929287 7.50220474 1.308391905 1 14.90548662 -6.173229276 2.212206575 3.860679277 1.433359117 0.203914304 1.699967893 0.402454338 3.867181796 0.62668434 0.612411948 6.71E-07 6.173229276 -2.42732016 EGQGGAGRT(ph)SPGGRT(ph)SPEAR ddPTM_HeLa_A485_30min_R1 1 EGQGGAGRTSPGGRTSPEAR 20 2 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 EGQGGAGRT(0.68)S(0.32)PGGRT(0.598)S(0.403)PEAR 68.207 0.0089936 939570000 83299 205440 164210 45860 242850 208500 272180 438500 122880 93491 TRUE FALSE FALSE 101828.5752 229464.4209 224958.1123 48365.21568 218671.0013 219416.7376 214026.5195 330957.1875 147540.8889 70185.41427 1.450850953 3.269403241 3.205197471 0.689106365 3.115618873 3.126244105 3.049444414 4.715469601 2.102158837 1 16.09888362 EGQGGAGRT(ph)SPGGRT(ph)SPEAR ddPTM_HeLa_A486_30min_R1 1 EGQGGAGRTSPGGRTSPEAR 20 2 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 EGQGGAGRT(0.53)S(0.47)PGGRT(0.537)S(0.463)PEAR 89.181 0.0010676 618430000 274950 215930 287970 125980 489320 221930 350680 396650 174560 266670 TRUE FALSE FALSE 255677.4248 198818.9204 399479.6961 293287.8067 427944.9229 194550.533 262936.1549 306341.4538 189691.0013 199894.0963 1.279064413 0.994621272 1.998456701 1.467215952 2.140858239 0.973268029 1.315377291 1.532518766 0.948957497 1 17.60887634 EGQGGAGRTS(ph)PGGR ddPTM_HeLa_A485_30min_R1 2 EGQGGAGRTSPGGR 14 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 EGQGGAGRT(0.021)S(0.979)PGGR;EGQGGAGRT(0.128)S(0.872)PGGR ; 137.27 3.66E-06 1123340000 640920 1361980 1018030 524700 1373410 1393930 1486050 2262840 988400 815950 TRUE FALSE FALSE 783490.4429 1521251.713 1394641.661 553363.0324 1236668.478 1466914.019 1168543.278 1707874.942 1186762.814 612548.6814 1.27906641 2.48347888 2.276785018 0.903378048 2.018890115 2.394771328 1.907674138 2.788145651 1.937417955 1 19.22446498 -5.98551843 24.99432324 2.121861793 1.781916217 0.027350919 0.601552666 726.7644021 1254345.369 0.183552316 0.208040077 1.03E-06 5.98551843 -0.339945575 EGQGGAGRTS(ph)PGGR ddPTM_HeLa_A486_30min_R1 2 EGQGGAGRTSPGGR 14 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 EGQGGAGRT(0.066)S(0.934)PGGR;EGQGGAGRT(0.226)S(0.774)PGGR ; 107.97 0.0001546 759700000 955810 572370 812870 370630 1125450 748630 930590 956220 645840 969760 TRUE FALSE FALSE 888812.6548 527013.3167 1127635.033 862845.3706 984285.5666 656271.6421 697746.5392 738509.5801 701821.9312 726925.7839 1.222700686 0.724989164 1.551238185 1.186978629 1.354038594 0.902804188 0.95985939 1.015935322 0.965465728 1 19.47144855 -6.275655466 24.81854504 0.969249281 1.199057881 0.272291573 0.195227736 1088.885666 1900978.519 0.069223753 0.061339204 5.30E-07 6.275655466 0.2298086 EGQGGAGRTS(ph)PGGRT(ph)SPEAR ddPTM_HeLa_A486_30min_R1 1 EGQGGAGRTSPGGRTSPEAR 20 2 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 EGQGGAGRT(0.15)S(0.85)PGGRT(0.55)S(0.45)PEAR 98.267 0.001469 355220000 117790 100460 114700 56761 200690 92850 158600 197460 90817 126100 TRUE FALSE FALSE 109533.5293 92499.18373 159114.9118 132142.4765 175517.5888 81395.11103 118916.6025 152502.6685 98689.09068 94523.73923 1.158793867 0.978581513 1.683332812 1.3979819 1.856862522 0.861107608 1.25806071 1.613379557 1.044066723 1 16.52838908 -6.283047801 24.99143005 1.200080326 1.404808672 0.152710354 0.296246668 2120.347867 2452300.891 0.10855511 0.095821583 5.21E-07 6.283047801 0.204728345 EGQPSPADEKGNDS(ph)DGEGESDDPEK ddPTM_HeLa_A485_30min_R1 4 EGQPSPADEKGNDSDGEGESDDPEK 25 1 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK ;;; 240.52 2.15E-49 2308900000 1944840 1019840 712878 4496040 1442880 1377150 2643710 1502180 1125100 5690030 TRUE FALSE FALSE 2377462.948 1139101.417 976601.2375 4741647.281 1299221.801 1449255.445 2078859.761 1133768 1350897.25 4271610.238 0.556573005 0.26666792 0.228626018 1.110037437 0.304152703 0.339276143 0.486668878 0.265419347 0.31625012 1 22.02634858 -10.3467892 3.503896779 1.00291148 0.430054799 0.322642779 0.247589512 271877433.1 412170773.1 8245801.179 0.061186597 4.50E-11 10.3467892 -0.572856681 EGQPSPADEKGNDS(ph)DGEGESDDPEK ddPTM_HeLa_A486_30min_R1 3 EGQPSPADEKGNDSDGEGESDDPEK 25 1 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK;EGQPSPADEKGNDS(1)DGEGESDDPEK ;; 317.25 8.53E-106 4384250000 4505100 4169530 1337400 3666290 2776780 6232330 8219300 6657600 3374570 11490000 TRUE FALSE FALSE 4189315.754 3839121.258 1855277.097 8535308.404 2428490.36 5463448.49 6162744.205 5141809.814 3667080.445 8612829.213 0.486404136 0.445744501 0.215408555 0.990999379 0.281961978 0.634338422 0.715530757 0.596994285 0.425769553 1 23.03805579 -14 0.174804882 2.787252953 0.437736319 0.307908844 0.210337847 165.562349 1.577214499 103.2271438 0.692606101 1.00E-14 14 -2.349516634 EGQPSPADEKGNDS(ph)DGEGESDDPEKK ddPTM_HeLa_A485_30min_R1 2 EGQPSPADEKGNDSDGEGESDDPEKK 26 2 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPSPADEKGNDS(1)DGEGESDDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK ; 191.25 6.96E-21 737480000 239720 106220 62455 667380 195750 189120 467850 314250 119300 893940 TRUE FALSE FALSE 293044.887 118641.505 85559.70347 703837.2795 176260.4427 199022.0308 367890.0255 237179.6948 143242.4157 671097.2097 0.436665334 0.176787361 0.127492265 1.048785883 0.262645173 0.296562149 0.548191857 0.353420773 0.213445107 1 19.35616223 -10.46082127 2.9820651 1.015054357 0.388408033 0.349745189 0.251576429 77658405.53 91295002.09 9754114.007 0.064132206 3.46E-11 10.46082127 -0.626646324 EGQPSPADEKGNDS(ph)DGEGESDDPEKK ddPTM_HeLa_A486_30min_R1 3 EGQPSPADEKGNDSDGEGESDDPEKK 26 2 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPSPADEKGNDS(1)DGEGESDDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK ;; 226.53 1.02E-38 2613830000 1361860 1000330 222370 1793070 713846 1864420 3052400 2371590 728464 4683770 TRUE FALSE FALSE 1266400.647 921060.2077 308477.6193 4174357.577 624308.7783 1634406.816 2288657.235 1831630.728 791607.8461 3510923.506 0.360703002 0.262341292 0.087862244 1.188962838 0.177818963 0.465520486 0.651867587 0.521694855 0.225469978 1 21.74341913 -11.32923115 2.205498947 3.946340063 0.446552706 0.241554957 0.29839428 20838327.77 2441210.085 306362312.4 0.073423734 4.69E-12 11.32923115 -3.499787357 EGRGES(ph)ENAGTNQETR ddPTM_HeLa_A485_30min_R1 3 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 EGRGES(0.747)ENAGT(0.253)NQETR;EGRGES(0.996)ENAGT(0.004)NQETR;EGRGES(1)ENAGTNQETR ;; 288.57 1.41E-58 1317990000 241427 393940 461630 353220 916450 525200 715040 1033410 496300 565150 TRUE FALSE FALSE 295131.6032 440007.8562 632406.147 372515.5142 825205.0201 552698.6599 562265.8627 779964.5772 595902.8577 424268.5058 0.695624585 1.037097617 1.490579994 0.878018305 1.945006544 1.30270961 1.325259488 1.838374912 1.404541816 1 18.69461806 -4.038119362 0.868093087 1.460272491 2.07E-16 0.333936521 0.311365769 3.417542128 1.555063654 0.105713746 5.198433846 9.16E-05 4.038119362 -1.460272491 EGRGES(ph)ENAGTNQETR ddPTM_HeLa_A486_30min_R1 3 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 EGRGES(0.871)ENAGT(0.124)NQET(0.006)R;EGRGES(0.997)ENAGT(0.003)NQETR;EGRGES(1)ENAGTNQETR ;; 160.71 3.88E-12 1399050000 494590 558070 653540 308144 1219930 653960 914780 1087070 486100 610440 TRUE FALSE FALSE 459921.7951 513846.5007 906608.1904 717374.8047 1066915.004 573281.0642 685892.3684 839567.8916 528235.5394 457581.8507 1.005113718 1.122960843 1.981302775 1.567751876 2.331637503 1.252849219 1.498950117 1.834792814 1.154406668 1 18.80367031 -7.917840526 5.844870638 1.003491596 1.583405995 0.21895289 0.380254608 0.286304782 14.35692092 0.376196501 0.097751105 1.21E-08 7.917840526 0.5799144 EGRGESENAGT(ph)NQETR ddPTM_HeLa_A485_30min_R1 1 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 EGRGES(0.137)ENAGT(0.861)NQET(0.001)R 212.92 1.47E-25 185720000 73805 116310 138980 96842 267770 151270 228190 315250 160730 178600 TRUE FALSE FALSE 90222.66763 129911.4427 190394.4854 102132.2332 241109.8786 159190.2633 179435.3424 237934.4432 192987.0367 134078.3069 0.672910255 0.96892216 1.420024535 0.761735702 1.798276576 1.187293209 1.338287651 1.774593137 1.439360633 1 17.03271631 -4.008332073 0.644984299 1.427120448 3.69E-16 0.339684742 0.30003642 4.751226904 1.196611231 0.132447706 5.373905964 9.81E-05 4.008332073 -1.427120448 EGRPPEPT(ph)PAK ddPTM_HeLa_A486_30min_R1 1 EGRPPEPTPAK 11 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EGRPPEPT(1)PAK 60.968 0.01208 0 259210 331250 191290 134890 293700 341770 397190 374450 232010 346770 TRUE FALSE FALSE 241040.7176 305000.5436 265362.6109 314030.737 256861.4074 299605.8923 297808.861 289195.9092 252120.8136 259936.5349 0.927306035 1.173365428 1.020874619 1.208105421 0.988169699 1.152611703 1.145698357 1.112563531 0.969932194 1 17.9877999 -7.761971973 24.99997014 0.984966051 1.095830326 0.201546284 0.084065441 20.21439773 948442.2396 0.061788345 0.019658779 1.73E-08 7.761971973 0.110864274 EGRPPEPT(ph)PAKR ddPTM_HeLa_A485_30min_R1 6 EGRPPEPTPAKR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR ;;;;; 140.46 2.70E-06 8833440000 2661810 2302480 1830660 2688260 3020820 2833560 4033880 4197540 1908900 2948380 TRUE FALSE FALSE 3253920.451 2571735.007 2507897.314 2835112.837 2720056.554 2981920.82 3172008.584 3168086.734 2291998.721 2213403.127 1.470098425 1.161891829 1.133050407 1.280884084 1.228902463 1.347210901 1.433091219 1.431319354 1.035508938 1 21.0778348 -7.837081694 7.607238838 1.00910029 1.301220846 0.535231408 0.10899087 0.220418364 18.63115315 0.112820136 0.029279093 1.46E-08 7.837081694 0.292120557 EGRPPEPT(ph)PAKR ddPTM_HeLa_A486_30min_R1 5 EGRPPEPTPAKR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR;EGRPPEPT(1)PAKR ;;;; 133.25 2.11E-05 5216210000 2474410 2881780 1901310 1361010 2833590 2991230 3808410 3528360 2104760 3065350 TRUE FALSE FALSE 2300966.637 2653417.258 2637548.151 3168500.062 2478174.72 2622202.455 2855505.537 2725029.452 2287202.291 2297766.408 1.001392756 1.154781116 1.147874798 1.378947856 1.078514644 1.14119627 1.242730996 1.185947119 0.995402441 1 21.13180071 -7.763935644 24.84956868 0.997701101 1.17127342 0.341026676 0.093620781 69.20162615 688805.4389 0.07801822 0.023781753 1.72E-08 7.763935644 0.17357232 EGRPSGEAFVELES(ph)EDEVK ddPTM_HeLa_A485_30min_R1 1 EGRPSGEAFVELESEDEVK 19 1 E7EQJ0;D6RDL0;G8JLB6;P31943;E9PCY7;D6RBM0;D6RIT2;E7EN40;D6RAM1;D6R9T0;D6RFM3;D6RIU0;D6RDU3;D6RJ04;D6RIH9 E7EQJ0;G8JLB6 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 EGRPSGEAFVELES(1)EDEVK 203.33 6.70E-26 241190000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 EGRPSGEAFVELES(ph)EDEVK ddPTM_HeLa_A486_30min_R1 2 EGRPSGEAFVELESEDEVK 19 1 E7EQJ0;D6RDL0;G8JLB6;P31943;E9PCY7;D6RBM0;D6RIT2;E7EN40;D6RAM1;D6R9T0;D6RFM3;D6RIU0;D6RDU3;D6RJ04;D6RIH9 E7EQJ0;G8JLB6 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 EGRPSGEAFVELES(1)EDEVK;EGRPSGEAFVELES(1)EDEVK ; 216.8 6.83E-35 654200000 505620 502910 239250 301450 394540 587240 714820 620600 425040 934880 TRUE FALSE FALSE 470178.649 463057.58 331894.0073 701790.8344 345053.1143 514792.2994 535964.4754 479302.9276 461882.8094 700779.963 0.670936205 0.660774572 0.473606588 1.001442495 0.49238439 0.734599056 0.764811358 0.683956381 0.659098196 1 19.418602 -14 0.29353074 3.513112146 0.666024616 0.320721225 0.138632447 300.981102 2.824773575 463.9871262 0.139376857 1.00E-14 14 -2.847087531 EGS(ph)FESR ddPTM_HeLa_A485_30min_R1 1 EGSFESR 7 0 P19174-2;V9GY71;V9GYH5;P19174 P19174-2;V9GY71 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 EGS(0.999)FES(0.001)R 106.68 0.0023218 0 218650 222600 204910 385330 291820 260440 379540 361890 242790 596430 TRUE FALSE FALSE 267287.9382 248631.1336 280714.736 406379.6022 262765.3762 274076.2357 298448.1784 273135.9101 291515.726 447750.9775 0.596956683 0.555288868 0.626943882 0.90760182 0.586856064 0.61211756 0.666549474 0.610017451 0.651066643 1 18.77233706 -11.34704424 1.995943753 2.738616687 0.647222624 0.567898919 0.092647747 4180672.722 457916.0407 32770114 0.024763985 4.50E-12 11.34704424 -2.091394063 EGS(ph)FESR ddPTM_HeLa_A486_30min_R1 2 EGSFESR 7 0 P19174-2;V9GY71;V9GYH5;P19174 P19174-2;V9GY71 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 EGS(0.991)FES(0.009)R;EGS(0.834)FES(0.166)R ; 105.94 0.0034072 450590000 776310 861010 513320 476340 782420 841680 1096360 1006840 678220 1335540 TRUE FALSE FALSE 721894.6779 792780.4319 712091.2512 1108943.593 684281.5878 737842.0792 822039.1319 777604.5112 737008.6557 1001112.091 0.721092757 0.791899767 0.711300221 1.107711717 0.68352145 0.737022443 0.821125965 0.776740705 0.736189945 1 19.93317209 -10.15690378 4.235040451 1.000055164 0.790856976 0.237691144 0.114069003 31095826.17 24859063.18 14334.74184 0.027203936 6.97E-11 10.15690378 -0.209198188 EGS(ph)LSPASVGSDTLSDLGISSLQDGLALHIR ddPTM_HeLa_A485_30min_R1 1 EGSLSPASVGSDTLSDLGISSLQDGLALHIR 31 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 EGS(0.491)LS(0.454)PAS(0.022)VGS(0.022)DT(0.005)LS(0.005)DLGISSLQDGLALHIR 49.445 0.023076 13569000 6767.3 8435 4792.5 4911.4 7137.4 4698.1 8163.5 6646.6 5370.6 7944.3 TRUE FALSE FALSE 8272.662538 9421.399875 6565.445183 5179.697346 6426.775395 4944.085251 6419.301535 5016.510929 6448.430158 5963.932214 1.387115454 1.579729537 1.100858452 0.868503725 1.077607049 0.82899756 1.076353873 0.841141507 1.081238003 1 12.54204814 -4.886705892 4.501154467 0.965616244 1.480108997 0.797728027 0.102115135 0.074663992 2.567827644 0.02447659 0.054449194 1.30E-05 4.886705892 0.514492753 EGS(ph)LSPASVGSDTLSDLGISSLQDGLALHIR ddPTM_HeLa_A486_30min_R1 1 EGSLSPASVGSDTLSDLGISSLQDGLALHIR 31 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 EGS(0.429)LS(0.429)PAS(0.061)VGS(0.061)DT(0.01)LS(0.01)DLGISSLQDGLALHIR 51.544 0.020558 20469000 7381.2 8929.8 7645 1937.8 10590 7792.3 8076.4 8392 9620.8 8172.5 TRUE FALSE FALSE 6863.815997 8222.170126 10605.34874 4511.296331 9261.703452 6830.965252 6055.599297 6481.324796 10454.73869 6126.052806 1.120430433 1.342164422 1.73118794 0.736411597 1.511854982 1.115067968 0.988499363 1.057993622 1.70660277 1 12.58074209 -5.246179098 24.86102017 1.167612751 1.39235119 0.121259446 0.293457055 1768.404927 2880960.955 0.077714153 0.133926988 5.67E-06 5.246179098 0.224738439 EGS(ph)PANWK ddPTM_HeLa_A485_30min_R1 6 EGSPANWK 8 0 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK ;;;;; 127.51 0.00058505 8131340000 6307640 5603050 4316590 9901660 7567200 6185870 9701010 8727360 5366670 12544470 TRUE FALSE FALSE 7710752.757 6258277.957 5913476.269 10442562.61 6813782.998 6509752.588 7628309.964 6586961.276 6443711.443 9417364.493 0.818780325 0.664546643 0.627933248 1.10886253 0.723533957 0.691249934 0.810025986 0.69944848 0.684237235 1 23.16689194 -11.25468045 2.286571479 1.920788532 0.759160466 0.235918324 0.130255836 11838608.2 2180057.969 56237506.72 0.03292547 5.56E-12 11.25468045 -1.161628066 EGS(ph)PANWK ddPTM_HeLa_A486_30min_R1 7 EGSPANWK 8 0 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK;EGS(1)PANWK ;;;;;; 145.75 0.00032415 11155650000 9795460 9822000 4876840 5403480 8775890 11417780 15018100 13066850 7662860 15820300 TRUE FALSE FALSE 9108848.838 9043668.949 6765283.054 12579574.52 7675136.044 10009170.39 11260412.53 10091813.5 8327082.875 11858793.91 0.768109212 0.762612878 0.570486603 1.060780263 0.647210509 0.844029373 0.949541127 0.850998304 0.702186322 1 23.49945395 -13.99999917 0.058720857 1.677461259 0.500512666 0.177261879 0.134683658 738.4485317 3.166078738 74.24649256 12.82299793 1.00E-14 13.99999917 -1.176948593 EGS(ph)PANWKR ddPTM_HeLa_A485_30min_R1 4 EGSPANWKR 9 1 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EGS(1)PANWKR;EGS(1)PANWKR;EGS(1)PANWKR;EGS(1)PANWKR ;;; 102.97 0.00084812 1521820000 1070050 1176280 737570 1445820 1405550 1251970 1925690 1897220 947970 1969180 TRUE FALSE FALSE 1308078.931 1313835.714 1010427.836 1524801.486 1265608.507 1317521.213 1514250.6 1431923.82 1138218.884 1478299.666 0.884853701 0.888747893 0.683506774 1.031456288 0.856124462 0.89124096 1.024319111 0.968628928 0.769951391 1 20.49550732 -5.27639487 24.98673197 0.931894862 0.82600728 0.244906598 0.092610853 1196.628694 1999252.217 0.025875744 0.038552735 5.29E-06 5.27639487 -0.105887583 EGS(ph)PANWKR ddPTM_HeLa_A486_30min_R1 2 EGSPANWKR 9 1 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EGS(1)PANWKR;EGS(1)PANWKR ; 98.156 0.0013102 802440000 953860 909650 553930 476730 921660 1014910 1282660 1215420 703500 1426060 TRUE FALSE FALSE 886999.3397 837566.0211 768426.5308 1109851.533 806056.8087 889700.723 961724.9014 938695.3984 764479.9464 1068965.294 0.829773749 0.783529667 0.718850776 1.038248425 0.754053301 0.83230085 0.899678322 0.878134588 0.715158809 1 20.02778358 -11.2321195 2.256168454 1.564419337 0.830999454 0.240425698 0.091686597 23243973.01 3651212.695 67058026.17 0.023064529 5.86E-12 11.2321195 -0.733419883 EGS(ph)PAPLEPEPGAAQPK ddPTM_HeLa_A485_30min_R1 3 EGSPAPLEPEPGAAQPK 17 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK ;; 210.67 2.54E-25 297270000 570980 452560 340910 967960 578990 524790 825760 691180 410485 1183760 TRUE FALSE FALSE 697992.5311 505482.9553 467026.7954 1020837.204 521343.7226 552267.1929 649329.6302 521667.0213 492865.5743 888670.4175 0.785434642 0.568808127 0.525534311 1.148724188 0.586655876 0.621453333 0.73067542 0.587019677 0.554610083 1 19.76128894 -10.18568849 4.213938786 1.000112992 0.679282879 0.232766818 0.174959323 119369260.9 30.55263362 137547.2537 0.042354325 6.52E-11 10.18568849 -0.320830112 EGS(ph)PAPLEPEPGAAQPK ddPTM_HeLa_A486_30min_R1 3 EGSPAPLEPEPGAAQPK 17 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK;EGS(1)PAPLEPEPGAAQPK ;; 258.7 1.65E-51 981700000 855840 799760 370701 422600 664690 954570 1222900 1018280 557650 1551910 TRUE FALSE FALSE 795850.0356 736384.1049 514246.3549 983834.157 581318.3822 836804.8588 916917.4855 786439.8729 605987.551 1163301.635 0.68413042 0.633012181 0.442057623 0.845725758 0.499714231 0.719336098 0.788202697 0.676041234 0.520920398 1 20.14979379 -10.92418246 2.502868606 1.227374263 0.647985638 0.435260785 0.121122654 19947570.23 10142796.92 26542801.13 0.029664189 1.19E-11 10.92418246 -0.579388625 EGS(ph)PEPWLPLTDGR ddPTM_HeLa_A485_30min_R1 1 EGSPEPWLPLTDGR 14 0 J3KSM5;Q494U1-3;Q494U1;Q494U1-2 J3KSM5 PLEKHN1 Pleckstrin homology domain-containing family N member 1 1 0 EGS(1)PEPWLPLTDGR 132.09 1.68E-05 28629000 24658 24192 22015 38195 26790 25879 39091 33702 21706 64670 TRUE FALSE FALSE 30143.08703 27021.04396 30159.26462 40281.49614 24122.69353 27233.98442 30738.88851 25436.53166 26062.1951 48548.95916 0.620880191 0.556573085 0.621213413 0.829708748 0.496873547 0.560959182 0.633152369 0.523935674 0.536822942 1 15.56715275 -10.97729498 2.847524225 1.345550744 0.598905102 0.649566454 0.088623194 9278516.771 5936008.104 21052272.1 0.022689172 1.05E-11 10.97729498 -0.746645642 EGS(ph)PEPWLPLTDGR ddPTM_HeLa_A486_30min_R1 1 EGSPEPWLPLTDGR 14 0 J3KSM5;Q494U1-3;Q494U1;Q494U1-2 J3KSM5 PLEKHN1 Pleckstrin homology domain-containing family N member 1 1 0 EGS(1)PEPWLPLTDGR 124.62 3.02E-05 22581000 21887 25373 20086 12528 30276 30847 29422 26577 25445 40281 TRUE FALSE FALSE 20352.83432 23362.35107 27863.83712 29165.81713 26478.50177 27041.41077 22060.30441 20525.99727 27650.59309 30194.37541 0.674060451 0.773731887 0.922815483 0.965935434 0.876934906 0.895577749 0.730609728 0.679795392 0.915753107 1 14.88199221 -11.85468385 1.200713039 2.827425277 0.827965988 0.212435866 0.100381673 170193.6656 5621.330464 839692.8635 0.03140133 1.40E-12 11.85468385 -1.999459289 EGS(ph)PIPHDPEFGSK ddPTM_HeLa_A485_30min_R1 7 EGSPIPHDPEFGSK 14 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK ;;;;;; 209.67 2.39E-22 24610820000 17850710 14006370 9589120 30626600 19893040 17385150 30105300 26665700 12991650 39590300 TRUE FALSE FALSE 21821538.86 15644293.13 13136534.52 32299653.61 17912419.09 18295409.57 23673056.72 20125895.26 15598954.99 29721166.82 0.734208687 0.52636874 0.441992557 1.086755907 0.60268223 0.615568348 0.796504958 0.67715697 0.52484329 1 24.82498742 -10.57650878 3.181850745 1.014844922 0.669566905 0.252296802 0.171763276 175318408.8 190234033.9 21817718.31 0.045657848 2.65E-11 10.57650878 -0.345278017 EGS(ph)PIPHDPEFGSK ddPTM_HeLa_A486_30min_R1 6 EGSPIPHDPEFGSK 14 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK ;;;;; 237.01 2.54E-35 33520230000 14749900 13782770 5903900 7389280 11038800 17240400 22905700 19480900 11196310 26629600 TRUE FALSE FALSE 13716008.18 12690573.11 8190048.192 17202617.27 9654210.771 15113454.74 17174451.59 15045524.34 12166815.17 19961374.83 0.68712743 0.635756466 0.410294795 0.861795213 0.483644581 0.75713496 0.860384204 0.753731868 0.609517895 1 24.25070775 -6.49230906 20.9361731 0.788725207 0.619223821 0.282032113 0.144523362 131.9974945 90400.71712 0.049075682 0.043168434 3.22E-07 6.49230906 -0.169501386 EGS(ph)PRDNPTAQQIMQLLR ddPTM_HeLa_A485_30min_R1 1 EGSPRDNPTAQQIMQLLR 18 1 Q08379;A0A087WYC0;Q08379-2 Q08379 GOLGA2 Golgin subfamily A member 2 1 0 EGS(1)PRDNPTAQQIMQLLR 63.184 0.0080349 32701000 10367 12156 14627 12716 33651 17063 32274 52219 16280 19876 TRUE FALSE FALSE 12673.10338 13577.53846 20038.13598 13410.64288 30300.58828 17956.3923 25378.39625 39412.20837 19547.24667 14921.27899 0.849330905 0.909944681 1.342923485 0.89875961 2.030696451 1.203408388 1.700819096 2.641342501 1.310024877 1 13.86508358 -5.520887211 1.043529191 1.736104147 0.890164258 0.253239053 0.47587819 0.683742955 1.519956433 0.193020321 0.39612307 3.01E-06 5.520887211 -0.845939889 EGS(ph)PYKAPIYIPDDIPIPAEFELR ddPTM_HeLa_A485_30min_R1 2 EGSPYKAPIYIPDDIPIPAEFELR 24 1 Q03112-8;Q03112;Q03112-3;C9JU02;Q03112-9 Q03112-8 MECOM MDS1 and EVI1 complex locus protein EVI1 1 0 EGS(1)PYKAPIYIPDDIPIPAEFELR;EGS(0.928)PY(0.072)KAPIYIPDDIPIPAEFELR ; 124.9 2.83E-06 412470000 138476 102171 81334 222424 151286 140659 250456 222930 104592 357770 TRUE FALSE FALSE 169279.5085 114119.0097 111422.8312 234574.4599 136223.4346 148023.6877 196944.0296 168256.068 125582.655 268584.5233 0.630265312 0.42489049 0.414852017 0.873372959 0.507190187 0.551125158 0.733266486 0.626454815 0.467572195 1 18.03501665 -11.49401417 2.265439959 6.488788973 0.582885911 0.461442405 0.135784352 13200235.58 1179995.439 370761434.4 0.034101348 3.21E-12 11.49401417 -5.905903061 EGS(ph)PYKAPIYIPDDIPIPAEFELR ddPTM_HeLa_A486_30min_R1 2 EGSPYKAPIYIPDDIPIPAEFELR 24 1 Q03112-8;Q03112;Q03112-3;C9JU02;Q03112-9 Q03112-8 MECOM MDS1 and EVI1 complex locus protein EVI1 1 0 EGS(1)PYKAPIYIPDDIPIPAEFELR;EGS(1)PYKAPIYIPDDIPIPAEFELR ; 175.28 6.00E-15 172961000 95374 94653 45315 70048 73463 113446 166590 142362 79099 204980 TRUE FALSE FALSE 88688.77511 87152.35156 62862.18158 163075.284 64248.58552 99450.18595 124907.42 109949.2803 85955.36501 153651.6738 0.577206697 0.567207303 0.409121359 1.061330996 0.418144391 0.647244403 0.812925866 0.715574895 0.559417043 1 17.22930396 -14 0.154902894 2.25183733 0.545361826 0.265265181 0.181325175 186.4768276 1.68654491 72.19158758 0.830418916 1.00E-14 14 -1.706475504 EGS(ph)QGELTPANSQSR ddPTM_HeLa_A485_30min_R1 2 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGS(1)QGELTPANSQSR;EGS(1)QGELTPANSQSR ; 164.79 5.67E-12 1216000000 618600 504930 404640 958870 633890 516060 800580 580410 501380 1272160 TRUE FALSE FALSE 756205.4359 563977.1712 554333.1745 1011250.64 570777.6859 543080.1036 629529.5429 438063.5375 602002.3671 955033.9244 0.791810025 0.590531034 0.580432967 1.05886358 0.597651739 0.568650065 0.659169823 0.458688981 0.630346579 1 19.86519246 -10.00307807 4.805008583 1.000004233 0.65654184 0.301594962 0.155351894 213423078.2 0.167991783 13146.34835 0.038554349 9.93E-11 10.00307807 -0.343462393 EGS(ph)QGELTPANSQSR ddPTM_HeLa_A486_30min_R1 2 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGS(1)QGELTPANSQSR;EGS(0.959)QGELT(0.041)PANSQSR ; 280.89 1.97E-58 1085180000 705780 728700 426570 386630 649880 844160 1009300 852970 582660 1218120 TRUE FALSE FALSE 656308.4667 670955.1581 591749.3279 900094.1792 568365.9905 740016.122 756762.4647 658767.3512 633165.4379 913094.8234 0.718773615 0.734814327 0.648069963 0.985762 0.622461081 0.810448272 0.828788473 0.721466527 0.693427913 1 19.80040516 -10.53948093 3.161467553 1.008595123 0.754230799 0.363014522 0.098673213 133159449.1 160934680.8 9805169.838 0.023791435 2.89E-11 10.53948093 -0.254364324 EGSCIFPEELS(ph)PK ddPTM_HeLa_A485_30min_R1 3 EGSCIFPEELSPK 13 0 H3BN63;Q86YC2 H3BN63 PALB2 Partner and localizer of BRCA2 1 0 EGSCIFPEELS(1)PK;EGSCIFPEELS(1)PK;EGSCIFPEELS(1)PK ;; 176.98 7.93E-13 260611000 261633 234289 179368 446855 349207 240825 396926 346127 216462 615540 TRUE FALSE FALSE 319832.3582 261687.0605 245723.6873 471265.5572 314438.7249 253434.2246 312119.5175 261238.8105 259903.9379 462097.2062 0.692132205 0.566303057 0.53175757 1.019840741 0.68046013 0.548443534 0.675441256 0.565333023 0.562444296 1 18.81783684 -10.68885718 2.667844065 1.051677268 0.650413138 0.372937875 0.136482622 35492010.49 30182601.41 12388382.43 0.035652337 2.05E-11 10.68885718 -0.401264129 EGSCIFPEELS(ph)PK ddPTM_HeLa_A486_30min_R1 1 EGSCIFPEELSPK 13 0 H3BN63;Q86YC2 H3BN63 PALB2 Partner and localizer of BRCA2 1 0 EGSCIFPEELS(1)PK 128.06 2.53E-05 89970000 151470 164140 84967 110550 141730 172410 270640 227880 116830 289500 TRUE FALSE FALSE 140852.7352 151132.9486 117868.4979 257365.9869 123952.9018 151139.8071 202923.0095 175996.6986 126956.9185 217007.3157 0.649069064 0.696441722 0.54315449 1.18597839 0.571192273 0.696473327 0.935097551 0.811017352 0.585035201 1 17.72738415 -14 0.224870126 2.245728953 0.720780201 0.137541866 0.186996887 336.9430147 3.374064881 191.9852037 0.340181248 1.00E-14 14 -1.524948752 EGSEFSFS(ph)DGEVAEK ddPTM_HeLa_A485_30min_R1 3 EGSEFSFSDGEVAEK 15 0 Q9BVS4;Q9BVS4-2 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 1 0 EGSEFS(0.002)FS(0.998)DGEVAEK;EGSEFS(0.001)FS(0.999)DGEVAEK;EGS(0.004)EFS(0.153)FS(0.843)DGEVAEK ;; 205.95 1.74E-25 513401000 262648 286159 210215 316739 298665 292117 384558 357432 227089 405222 TRUE FALSE FALSE 321073.1415 319622.8058 287982.2763 334041.6495 268928.8639 307411.7944 302394.0418 269771.2416 272663.6793 304207.613 1.05544085 1.050673265 0.946663607 1.098071302 0.884030683 1.010532877 0.994038377 0.886799771 0.896307876 1 18.21469673 -5.495971025 0.564593182 0.93338934 1.062996054 0.267193329 0.061799651 1.697136773 0.986705288 0.043085279 0.123553635 3.19E-06 5.495971025 0.129606714 EGSEFSFS(ph)DGEVAEK ddPTM_HeLa_A486_30min_R1 2 EGSEFSFSDGEVAEK 15 0 Q9BVS4;Q9BVS4-2 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 1 0 EGSEFS(0.003)FS(0.997)DGEVAEK;EGSEFS(0.005)FS(0.995)DGEVAEK ; 243.83 5.00E-42 133380000 396750 372810 173079 170195 288400 386490 392090 381930 291610 451290 TRUE FALSE FALSE 368939.8738 343267.1778 240099.824 396222.5612 252226.1828 338808.7933 293984.9349 294972.8765 316886.9896 338284.0466 1.090621558 1.014730613 0.709758046 1.171271791 0.745604723 1.001551202 0.869047588 0.871968038 0.936748253 1 18.36787562 -4.533462455 24.99783419 0.910059359 1.07164893 0.176916909 0.124925228 267.9838809 632955.5678 0.029058131 0.077046724 2.93E-05 4.533462455 0.16158957 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR ddPTM_HeLa_A485_30min_R1 3 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR 30 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 0 ;; ;; 241.54 1.78E-60 363885000 142030.1 202263.8 212298.5 137156 262218 201633.6 250966.1 278757.1 177906.7 233485 FALSE FALSE TRUE 173624.2057 225916.7919 290836.5496 144648.485 236110.6552 212190.8235 197345.1425 210391.4842 213610.9428 175281.4865 0.990545033 1.288879941 1.65925424 0.825235385 1.347037043 1.210571794 1.125875565 1.200306367 1.21867373 1 17.4193141 -13.88229868 0.214299124 1.15E-07 1.24286202 0.080166335 0.207685233 371.1115368 3.882996324 159.4053907 0.418644159 1.31E-14 13.88229868 1.242861905 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR ddPTM_HeLa_A486_30min_R1 3 EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR 30 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 0 ;; ;; 258.44 5.21E-70 238975000 153087.6 177200.5 162559 53996.1 210568 165509.4 179671.5 186211.9 145522.6 160309.9 FALSE FALSE TRUE 142356.9498 163158.487 225506.1983 125705.6496 184156.598 145090.533 134715.7903 143815.5153 158136.6161 120167.2576 1.184656725 1.357761592 1.876602685 1.046089027 1.532502294 1.207404878 1.121069025 1.19679452 1.315970917 1 16.87468433 -6.396674386 6.507412294 1.17359517 1.403487983 0.221700343 0.217271501 0.403256609 19.66587922 0.076221735 0.066943828 4.01E-07 6.396674386 0.229892813 EGSGSTKPGT(ph)PGNS(ph)PSSQR ddPTM_HeLa_A486_30min_R1 2 EGSGSTKPGTPGNSPSSQR 19 1 P78524 P78524 ST5 Suppression of tumorigenicity 5 protein 2 0 EGS(0.001)GS(0.008)T(0.008)KPGT(0.983)PGNS(0.978)PS(0.019)S(0.003)QR;EGS(0.002)GS(0.011)T(0.011)KPGT(0.977)PGNS(0.685)PS(0.283)S(0.032)QR ; 126.3 4.55E-06 448710000 725040 792000 419630 300580 673140 843420 939990 854250 697580 976860 TRUE FALSE FALSE 674218.4401 729239.0356 582121.9741 699765.4305 588708.5044 739367.4157 704794.5598 659755.9231 758046.7961 732247.8977 0.920751623 0.995890924 0.794979372 0.955640068 0.803974318 1.009722825 0.962508137 0.901000775 1.035232465 1 19.48197262 -6.296319864 24.99754554 0.974306345 0.897789899 0.299113584 0.066338873 895.0742589 641463.714 0.022698791 0.020019318 5.05E-07 6.296319864 -0.076516446 EGSGSTKPGT(ph)PGNS(ph)PSSQRLPSK ddPTM_HeLa_A485_30min_R1 2 EGSGSTKPGTPGNSPSSQRLPSK 23 2 P78524 P78524 ST5 Suppression of tumorigenicity 5 protein 2 0 EGS(0.004)GS(0.005)T(0.005)KPGT(0.986)PGNS(0.965)PS(0.03)S(0.005)QRLPSK;EGS(0.021)GS(0.025)T(0.028)KPGT(0.926)PGNS(0.825)PS(0.144)S(0.031)QRLPSK ; 97.047 0.0063394 451280000 551140 553080 333870 565180 709550 819510 1197970 1317990 507210 892260 TRUE FALSE FALSE 673739.1916 617757.8948 457382.4065 596054.3523 638904.7106 862418.2764 942013.923 994750.886 609002.3946 669836.0028 1.005827081 0.92225245 0.682827445 0.889851172 0.953822589 1.287506603 1.406335161 1.485066317 0.90918134 1 19.3534484 -6.162585555 3.711863128 1.260232729 0.870097611 0.448349865 0.179304494 0.203096201 5.149551913 0.061993033 0.061691199 6.88E-07 6.162585555 -0.390135118 EGSGSTKPGT(ph)PGNS(ph)PSSQRLPSK ddPTM_HeLa_A486_30min_R1 1 EGSGSTKPGTPGNSPSSQRLPSK 23 2 P78524 P78524 ST5 Suppression of tumorigenicity 5 protein 2 0 EGSGS(0.001)T(0.001)KPGT(0.998)PGNS(0.896)PS(0.093)S(0.011)QRLPSK 138.88 3.04E-06 283330000 508740 397210 182920 242690 435220 418400 635100 623880 289080 752570 TRUE FALSE FALSE 473079.9531 365733.633 253751.5228 564994.5849 380630.6493 366782.062 476191.2626 481836.1432 314137.6872 564121.5736 0.838613475 0.648324138 0.449817087 1.001547559 0.674731595 0.650182654 0.844128792 0.854135289 0.55686168 1 19.10564659 -11.43112335 2.315121046 3.7304822 0.725820414 0.223058665 0.154360302 10536841.91 1820918.233 148724569.3 0.040123856 3.71E-12 11.43112335 -3.004661786 EGSITQGT(ph)PLKYDTGASTTGSK ddPTM_HeLa_A485_30min_R1 1 EGSITQGTPLKYDTGASTTGSK 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 EGSIT(0.001)QGT(0.999)PLKYDTGASTTGSK 240.68 1.20E-46 337730000 207970 104660 91294 289240 180550 137850 216350 182210 121580 338310 TRUE FALSE FALSE 254232.209 116899.0766 125067.4497 305040.4488 162573.8081 145067.6128 170125.0551 137522.7118 145979.9908 253975.5431 1.001010593 0.460276904 0.49243895 1.201062295 0.640115997 0.571187332 0.669848179 0.541480137 0.574779717 1 17.95433005 -10.04792351 4.796424303 1.000008751 0.677441474 0.15169293 0.224059777 302024093.3 0.167336318 29189.15752 0.054316393 8.96E-11 10.04792351 -0.322567277 EGSITQGT(ph)PLKYDTGASTTGSK ddPTM_HeLa_A486_30min_R1 1 EGSITQGTPLKYDTGASTTGSK 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 EGSIT(0.001)QGT(0.999)PLKYDTGASTTGSK 191.59 7.96E-20 325220000 224970 226530 98976 116230 168570 261080 310540 294440 158790 286710 TRUE FALSE FALSE 209200.7647 208578.9378 137302.1579 270589.3139 147426.3787 228870.6041 232839.6074 227402.4396 172554.0451 214915.9498 0.973407348 0.970513998 0.63886444 1.259047149 0.685972255 1.064930752 1.083398452 1.058099409 0.802890829 1 17.71341303 EGSLS(ph)PASVGSDTLSDLGISSLQDGLALHIR ddPTM_HeLa_A485_30min_R1 2 EGSLSPASVGSDTLSDLGISSLQDGLALHIR 31 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 EGS(0.038)LS(0.906)PAS(0.054)VGS(0.002)DTLSDLGISSLQDGLALHIR;EGS(0.169)LS(0.439)PAS(0.146)VGS(0.137)DT(0.087)LS(0.021)DLGIS(0.001)S(0.001)LQDGLALHIR ; 145.01 1.34E-09 108740000 12100.9 16720.9 15026.5 14892.5 16064.2 17841.7 20040.6 20757.7 12758.3 23198 TRUE FALSE FALSE 14792.70346 18676.2638 20585.42765 15706.03957 14464.79184 18775.86382 15758.76209 15666.84153 15318.77378 17415.16553 0.849415036 1.072413798 1.18204031 0.901859907 0.830585952 1.078132952 0.904887299 0.899609108 0.879622635 1 14.08805657 EGSLS(ph)PASVGSDTLSDLGISSLQDGLALHIR ddPTM_HeLa_A486_30min_R1 1 EGSLSPASVGSDTLSDLGISSLQDGLALHIR 31 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 EGS(0.013)LS(0.987)PASVGSDTLSDLGISSLQDGLALHIR 246.33 8.27E-51 82110000 17310 24898 17733 4883.9 21051 23697 24587 28470 25749 25209 TRUE FALSE FALSE 16096.65839 22924.9918 24599.69251 11369.96602 18410.58729 20773.50507 18435.07255 21988.0025 27980.94405 18896.50232 0.851832689 1.213187045 1.301811949 0.601696855 0.974285451 1.099330698 0.975581207 1.163601715 1.480747261 1 14.2058316 -7.448415459 4.83018035 1.264995851 1.010940671 0.176805707 0.211288337 0.346770722 14.80641076 0.12674071 0.056349578 3.56E-08 7.448415459 -0.25405518 EGSQGELT(ph)PANSQSR ddPTM_HeLa_A485_30min_R1 2 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGSQGELT(1)PANSQSR;EGSQGELT(1)PANSQSR ; 353.33 1.68E-103 3679100000 1632570 1737870 1705400 2047810 2489700 1783850 2481900 2301500 1773330 2916700 TRUE FALSE FALSE 1995729.564 1941098.779 2336298.428 2159676.675 2241816.726 1877249.628 1951621.79 1737053.516 2129221.065 2189620.368 0.911450036 0.886500147 1.066987895 0.98632471 1.023838086 0.857340229 0.891306008 0.793312641 0.972415628 1 21.06224933 -6.267984688 24.96490833 0.889233885 0.975839743 0.18773468 0.072291135 763.0034232 2910214.374 0.025262189 0.022817622 5.40E-07 6.267984688 0.086605858 EGSQGELT(ph)PANSQSR ddPTM_HeLa_A486_30min_R1 1 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGSQGELT(1)PANSQSR 372.09 7.56E-118 2225300000 903810 980660 761630 436990 1025300 1013500 1279700 1194200 884490 1235500 TRUE FALSE FALSE 840457.5863 902948.9301 1056553.533 1017334.804 896697.3135 888464.6745 959505.5247 922306.7292 961158.3054 926122.7582 0.907501278 0.974977585 1.140835298 1.098488073 0.968227274 0.959337913 1.036045725 0.995879565 1.037830349 1 19.82084391 -5.821807914 24.99987276 0.999161382 1.034377849 0.052178128 0.063623492 243.0047872 100631.4775 0.021608042 0.024501224 1.51E-06 5.821807914 0.035216467 EGSTQQLQTTS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EGSTQQLQTTSPK 13 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 EGSTQQLQTT(0.02)S(0.98)PK;EGSTQQLQTT(0.002)S(0.998)PK ; 176.4 1.11E-12 237530000 771507 679551 493096 1328620 1058740 780150 1308810 1274140 630295 1740390 TRUE FALSE FALSE 943126.0705 759018.5781 675512.7298 1401199.146 953328.1281 820997.4477 1029172.052 961655.1672 756789.4251 1306542.803 0.721848583 0.580936634 0.517023039 1.072447947 0.72965702 0.628373939 0.787706342 0.736030358 0.579230488 1 20.31732296 -11.15937967 2.446817987 1.714043799 0.709174659 0.264461779 0.147043388 36201903.62 9739631.983 143090913 0.038792855 6.93E-12 11.15937967 -1.00486914 EGSTQQLQTTS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EGSTQQLQTTSPK 13 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 EGSTQQLQTT(0.005)S(0.995)PK;EGSTQQLQT(0.001)T(0.025)S(0.975)PK ; 186.69 2.86E-17 901230000 1215070 1193180 495190 840660 999850 1323710 1754800 1644350 822490 2153600 TRUE FALSE FALSE 1129899.868 1098628.071 686940.8296 1957098.965 874439.4898 1160404.119 1315730.48 1269967.401 893784.0954 1614324.542 0.699921136 0.680549693 0.425528332 1.21233303 0.541675151 0.71881712 0.815034676 0.786686548 0.553658247 1 20.62249922 -11.41033247 2.191575865 3.220104605 0.720095192 0.152865525 0.201003261 8066744.843 545319.7153 89447724.27 0.048563389 3.89E-12 11.41033247 -2.500009413 EGSTQQLQTTS(ph)PKPLVQQPILPVVK ddPTM_HeLa_A485_30min_R1 1 EGSTQQLQTTSPKPLVQQPILPVVK 25 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 EGSTQQLQT(0.146)T(0.109)S(0.745)PKPLVQQPILPVVK 141.12 7.22E-08 133870000 123250 94200 77498 175880 131890 126820 209700 187870 86430 236080 TRUE FALSE FALSE 150666.5373 105215.8706 106167.7352 185487.879 118758.5685 133460.0991 164895.8819 141794.5879 103775.7082 177229.6007 0.850120616 0.59366985 0.59904065 1.046596496 0.670083146 0.753035038 0.930408246 0.800061544 0.585543881 1 17.43526006 -11.21764149 2.332966684 1.769081443 0.761134513 0.19719025 0.145973576 17641202.01 2520688.497 71942486.47 0.036335069 6.06E-12 11.21764149 -1.00794693 EGSVLDILKS(ph)PGFAS(ph)PK ddPTM_HeLa_A485_30min_R1 1 EGSVLDILKSPGFASPK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 EGSVLDILKS(1)PGFAS(1)PK 85.805 0.0012795 94073000 170570 128160 92559 323140 238260 191800 313880 320530 112470 515800 TRUE FALSE FALSE 208512.708 143147.1972 126800.4258 340792.32 214537.9978 201842.3514 246816.9738 241919.5149 135041.6974 387220.5526 0.538485642 0.369678717 0.327463057 0.880098739 0.554045999 0.521259396 0.637406698 0.624758973 0.348746203 1 18.562796 -11.3079378 2.351270421 3.443162218 0.538839468 0.445387458 0.156053449 11837262.97 1277806.52 154511194.7 0.03980442 4.92E-12 11.3079378 -2.90432275 EGSVLDILKS(ph)PGFASPK ddPTM_HeLa_A485_30min_R1 1 EGSVLDILKSPGFASPK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 EGSVLDILKS(1)PGFASPK 203.71 1.89E-25 261980000 357430 352440 213280 430820 508790 429390 679440 696700 243240 568780 TRUE FALSE FALSE 436939.0704 393654.7922 292181.1473 454354.6057 458133.0811 451872.1964 534272.0935 525833.2326 292056.0369 426993.6136 1.023291816 0.921921967 0.684275216 1.064078223 1.072927244 1.058264531 1.251241415 1.23147798 0.683982213 1 18.70385497 -5.466773576 24.92038299 1.071439634 0.879894974 0.183985173 0.165511219 434.7093416 193085.252 0.046796976 0.069410811 3.41E-06 5.466773576 -0.191544661 EGSVLDILKS(ph)PGFASPK ddPTM_HeLa_A486_30min_R1 1 EGSVLDILKSPGFASPK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 EGSVLDILKS(1)PGFASPK 239.73 1.21E-42 435680000 614990 495520 222190 314020 478530 548660 828000 806100 340830 722590 TRUE FALSE FALSE 571882.3768 456253.1905 308227.9185 731054.4297 418508.3053 480971.9076 620825.6423 622568.627 370373.4188 541648.7607 1.055817752 0.842341428 0.569054968 1.349683564 0.772656259 0.887977491 1.146177537 1.149395461 0.683788916 1 19.04699809 -5.239195567 24.99564788 0.996885255 0.824398476 0.126576394 0.211959901 1789.860666 2011286.325 0.05673411 0.0981666 5.77E-06 5.239195567 -0.172486779 EGT(ph)PPPPPPSR ddPTM_HeLa_A486_30min_R1 2 EGTPPPPPPSR 11 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 EGT(1)PPPPPPSR;EGT(1)PPPPPPSR ; 115.92 0.0016339 2255900000 1579790 1760310 904470 1677330 1521790 1859740 2625500 2253800 1154150 3391900 TRUE FALSE FALSE 1469054.879 1620816.625 1254705.007 3904909.008 1330912.908 1630304.187 1968572.13 1740658.94 1254192.651 2542546.162 0.577788872 0.637477757 0.493483668 1.535826199 0.523456733 0.641209277 0.774252267 0.684612522 0.493282155 1 21.27784254 EGTAPS(ph)ENGETK ddPTM_HeLa_A485_30min_R1 3 EGTAPSENGETK 12 0 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 EGTAPS(1)ENGETK;EGTAPS(1)ENGETK;EGTAPS(1)ENGETK ;; 271 1.47E-40 2913700000 3078286 2379222 1566690 4350500 2386056 2312364 3617920 2678212 2057392 5508560 TRUE FALSE FALSE 3763040.101 2657451.316 2146273.826 4588156.799 2148491.887 2433435.803 2844921.836 2021376.308 2470291.703 4135377.37 0.909962928 0.642613981 0.519003137 1.109489265 0.519539499 0.588443469 0.687947334 0.488800931 0.597355811 1 21.97958756 -4.257552571 23.40701869 0.667900119 0.909963146 0.100148895 0.198464142 354.1039359 2132247.456 0.047816137 0.345283782 5.53E-05 4.257552571 0.242063027 EGTAPS(ph)ENGETK ddPTM_HeLa_A486_30min_R1 3 EGTAPSENGETK 12 0 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 EGTAPS(1)ENGETK;EGTAPS(1)ENGETK;EGTAPS(1)ENGETK ;; 298.78 6.64E-50 3886981000 5450810 5530020 2257129 2248769 3681868 5860840 6513300 5615070 4639040 8167270 TRUE FALSE FALSE 5068736.367 5091801.075 3131149.797 5235247.878 3220053.783 5137789.149 4883603.449 4336641.137 5041155.722 6122132.432 0.827936413 0.831703844 0.511447577 0.8551347 0.525969312 0.839215618 0.797696473 0.708354676 0.823431342 1 22.54560282 -8.632327548 0.691852266 1.006380517 0.726778378 0.304878144 0.119629749 2.709606838 1.959219286 0.150808261 0.043755182 2.33E-09 8.632327548 -0.279602139 EGTETFADHR ddPTM_HeLa_A486_30min_R1 1 EGTETFADHR 10 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 112.71 0.002152 144070000 221440 213710 194140 83438 276000 186430 255850 235970 196130 221060 FALSE FALSE TRUE 205918.1995 196774.8413 269316.2072 194247.8807 241381.5064 163430.1621 191833.6239 182244.7822 213130.7063 165705.1371 1.242678429 1.187499945 1.625273736 1.172250203 1.456692958 0.986270944 1.157680608 1.099813713 1.28620458 1 17.3382588 -6.260182441 24.99863427 1.115462742 1.335456093 0.37963339 0.147319291 128.8695275 2563037.178 0.048562674 0.046036531 5.49E-07 6.260182441 0.219993351 EGTGQQERES(ph)PRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_A486_30min_R1 2 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 48 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 2 0 EGT(0.297)GQQERES(0.703)PRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;EGT(0.028)GQQERES(0.972)PRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR ; 273.32 1.37E-81 1465610000 116164 161242 175342 78120 259103 151079 188875 205311 145784 130333 TRUE FALSE FALSE 108021.5035 148464.5967 243239.1182 181867.308 226603.8857 132440.409 141616.4773 158566.1672 158420.6745 97696.76847 1.105681438 1.519646955 2.489735556 1.86154886 2.319461424 1.355627326 1.449551295 1.623044136 1.621554909 1 16.57602322 -6.301799851 24.95840894 1.451370448 1.875508896 0.240153195 0.395622972 858.267138 530739.0812 0.145467131 0.128291366 4.99E-07 6.301799851 0.424138448 EGTGQQERES(ph)PRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A485_30min_R1 2 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 49 3 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 2 0 EGT(0.021)GQQERES(0.981)PRPLQLPGAEGPAIS(0.998)DGEEGGGEPGAGGGAAGAAGAGRR;EGT(0.007)GQQERES(0.993)PRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR ; 66.42 0.00044181 343170000 27675 40553 38716 35369 58287 45851 62947 81282 41100 47850 TRUE FALSE FALSE 33831.20827 45295.32059 53038.65951 37301.11891 52483.74162 48251.68746 49497.85922 61347.46205 49348.39301 35921.87561 0.941799605 1.260939742 1.476500283 1.038395637 1.461052373 1.343239645 1.377930812 1.707802307 1.373769943 1 15.13257506 -5.784297374 24.99816257 1.411017937 1.206453195 0.160449247 0.209946517 405.8416995 443837.9454 0.064077295 0.072703946 1.64E-06 5.784297374 -0.204564742 EGTGQQERES(ph)PRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A486_30min_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 49 3 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 2 0 EGT(0.127)GQQERES(0.873)PRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR 126.13 3.11E-11 187050000 33775 33103 38417 16594 59997 27893 42033 49818 24089 38804 TRUE FALSE FALSE 31407.54691 30479.79772 53293.09124 38631.67061 52471.61681 24451.84526 31515.89882 38475.52892 26177.05392 29087.22583 1.079771137 1.04787572 1.832181988 1.328131835 1.803940229 0.840638616 1.083496206 1.322763785 0.899950173 1 14.82809809 -6.279825828 24.99689643 1.052925409 1.415771834 0.341213174 0.269260579 1095.741856 1489687.589 0.097503361 0.0861397 5.25E-07 6.279825828 0.362846424 EGTGQQERES(ph)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_A485_30min_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 48 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 EGT(0.051)GQQERES(0.949)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 294.97 3.22E-97 484990000 21677 19227 27734 36370 42326 29096 34783 25047 34693 44968 TRUE FALSE FALSE 26498.97387 21475.4304 37993.96071 38356.80101 38111.87482 30619.42157 27351.3279 18904.18398 41655.56688 33758.30517 0.784961618 0.636152505 1.125470029 1.136218208 1.128962921 0.907018922 0.81021034 0.559986169 1.233935373 1 15.04295486 -4.750808111 24.99973659 0.973135808 0.710556998 0.254266175 0.188547805 324.6970888 763519.8836 0.051205387 0.132480983 1.77E-05 4.750808111 -0.26257881 EGTGQQERES(ph)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_A486_30min_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 48 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 EGT(0.194)GQQERES(0.806)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 102.32 1.01E-06 588430000 30060 35992 29931 16828 43412 35660 48818 40454 33722 37159 TRUE FALSE FALSE 27952.94923 33139.86284 41521.08478 39176.43444 37966.86216 31260.63176 36603.22006 31243.5073 36645.05011 27854.14454 1.003547217 1.189764159 1.490660922 1.406484927 1.36305971 1.12229732 1.314103185 1.12168253 1.315604939 1 14.76560439 -6.258817125 24.77611 1.191053104 1.302636709 0.121331216 0.151221244 514.0106426 4856585.638 0.053345675 0.050918351 5.51E-07 6.258817125 0.111583605 EGTGQQERES(ph)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A485_30min_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 49 3 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 EGT(0.064)GQQERES(0.936)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 77.502 0.00017634 97921000 9609.6 12964 15652 12491 24208 18550 21287 25661 14194 15779 TRUE FALSE FALSE 11747.22237 14480.02703 21442.32613 13173.3517 21797.76652 19521.24932 16738.85855 19367.59952 17042.6056 11845.58569 0.991696204 1.222398572 1.810153309 1.11208952 1.840159456 1.647976708 1.4130883 1.635005649 1.438730515 1 13.53206191 -4.547708772 8.700348181 1.512806038 1.04815697 0.270887564 0.259032243 0.215142585 68.00534503 0.061155546 0.166108762 2.83E-05 4.547708772 -0.464649069 EGTGQQERES(ph)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A486_30min_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 49 3 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 EGT(0.014)GQQERES(0.986)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 169.66 1.10E-18 81727000 8574.5 10152 10549 9150.1 18071 11123 19840 21693 8415 9503.1 TRUE FALSE FALSE 7973.471829 9347.518547 14633.85531 21301.89522 15804.36667 9750.75735 14875.82215 16753.97745 9144.418975 7123.461905 1.119325398 1.3122157 2.054317901 2.990385223 2.21863567 1.368822839 2.088285493 2.351943153 1.283704342 1 12.79836283 -7.931392711 5.782041332 1.004186557 1.9492568 0.273861271 0.527632012 0.251265503 14.02031284 0.554091192 0.143985678 1.17E-08 7.931392711 0.945070243 EGTPGS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 EGTPGSPGR 9 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 0 EGT(0.011)PGS(0.989)PGR 72.652 0.013155 493820000 587960 789950 748220 692810 888300 756550 928810 947700 757380 814470 TRUE FALSE FALSE 718749.6736 882327.7808 1025017.714 730656.456 799857.733 796161.7882 730362.1558 715275.0891 909379.2189 611437.6182 1.175507774 1.443038103 1.676406036 1.194981196 1.30815918 1.302114499 1.194499871 1.169825126 1.487280455 1 19.22184579 EGTPGS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 EGTPGSPGR 9 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 0 EGT(0.004)PGS(0.996)PGR 80.24 0.00805 591940000 282180 332780 273660 74190 395340 318160 336570 357080 289890 248820 TRUE FALSE FALSE 262400.6392 306409.3008 379628.4809 172718.0694 345752.7708 278908.654 252356.6261 275780.679 315017.8986 186513.8525 1.40686944 1.642823291 2.035390272 0.926033467 1.853764566 1.495377691 1.353018142 1.478606953 1.688978564 1 17.50892326 -11.13458028 1.976635337 4.68E-05 1.541988342 0.245845831 0.284952799 4263876.606 960149.8377 19108701.18 0.069312556 7.34E-12 11.13458028 1.541941525 EGTRS(ph)PR ddPTM_HeLa_A485_30min_R1 1 EGTRSPR 7 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 EGT(0.001)RS(0.999)PR 42.835 0.035228 333260000 23987 54565 50945 38204 86185 73547 101140 170700 60715 68727 TRUE FALSE FALSE 29322.8254 60945.9021 69791.6755 40290.98778 77604.11879 77397.80719 79530.61276 128835.5574 72899.94359 51594.62373 0.568331025 1.181245209 1.35269279 0.780914461 1.504112506 1.500113803 1.541451551 2.4970733 1.41293682 1 15.65493312 -6.065905427 1.581962324 1.716554333 1.004278773 0.309368461 0.414350348 0.426566897 2.155819626 0.165441308 0.174569242 8.59E-07 6.065905427 -0.71227556 EGVFAK(ac)EVR ddPTM_HeLa_A485_30min_R1 2 EGVFAKEVR 9 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; EGVFAK(1)EVR;EGVFAK(1)EVR 152.86 0.0003436 577120000 382120 545550 552460 422320 646250 523920 616240 645120 495930 601550 FALSE TRUE FALSE 467121.2757 609347.3268 756837.9438 445390.2722 581907.0809 551351.6411 484575.2898 486903.3085 595458.6021 451594.6557 1.034381762 1.349323601 1.675923163 0.986261167 1.288560601 1.220899393 1.073031498 1.078186605 1.318568753 1 18.78466889 -5.298447872 24.99466227 1.148216785 1.352821572 0.232648993 0.178483833 851.6385234 575174.7809 0.050275761 0.074573064 5.03E-06 5.298447872 0.204604787 EGVFAK(ac)EVR ddPTM_HeLa_A486_30min_R1 2 EGVFAKEVR 9 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; EGVFAK(1)EVR;EGVFAK(1)EVR 184.87 1.01E-07 438350000 499350 569460 487250 156052 688150 492600 575490 588370 513390 555610 FALSE TRUE FALSE 464348.1436 524333.9157 675926.249 363296.9424 601835.8103 431828.0204 431496.3151 454410.995 557891.0586 416481.6396 1.114930646 1.258960458 1.62294369 0.87230002 1.44504764 1.036847677 1.03605123 1.091070894 1.33953338 1 18.66789337 -6.295266274 24.86342273 1.102351976 1.260930747 0.137268249 0.203187355 1286.642671 945702.9978 0.069981544 0.061721128 5.07E-07 6.295266274 0.158578771 EGVHGGLINK ddPTM_HeLa_A485_30min_R1 2 EGVHGGLINK 10 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ; ; 87.258 0.014107 66791000 143180 147870 133602 175954 176256 152085 182481 157266 159077 251850 FALSE FALSE TRUE 175029.897 165162.1102 183026.9394 185565.9215 158707.3338 160047.9354 143492.4436 118696.2669 191002.2948 189068.43 0.925748932 0.873557316 0.968046011 0.981474916 0.83941742 0.846507984 0.758944492 0.627795275 1.010228386 1 17.52854896 -5.870236639 6.149738947 0.822443136 0.93447321 0.120642698 0.107930987 0.356744405 18.07745655 0.033197848 0.037859173 1.35E-06 5.870236639 0.112030075 EGVHGGLINK(ac)K ddPTM_HeLa_A485_30min_R1 2 EGVHGGLINKK 11 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 1 ; EGVHGGLINK(1)K;EGVHGGLINK(1)K 131.83 0.0032839 183144000 203478 264400 486150 298850 346250 327270 537720 500680 234052 692450 FALSE TRUE FALSE 248740.9791 295319.28 665997.1154 315175.4188 311776.1342 344405.3511 422831.7292 377887.445 281024.0895 519834.9586 0.478499907 0.568102001 1.281170311 0.606299006 0.599759845 0.662528261 0.813396102 0.726937346 0.540602522 1 18.98769413 -11.23778981 2.301187316 2.027840644 0.708531734 0.148910181 0.215519096 27636253.5 3938813.557 148316987.4 0.054868536 5.78E-12 11.23778981 -1.31930891 EGVHGGLINK(ac)K ddPTM_HeLa_A486_30min_R1 2 EGVHGGLINKK 11 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 1 ; EGVHGGLINK(1)K;EGVHGGLINK(1)K 156.58 4.04E-05 156088000 281530 325770 571610 130090 356290 342140 553260 496990 302880 815800 FALSE TRUE FALSE 261796.2008 299954.7988 792952.7002 302856.0944 311600.7859 299930.2454 414828.4962 383836.2262 329133.8823 611518.37 0.428108482 0.490508239 1.296694816 0.495252652 0.509552617 0.490468088 0.678358193 0.627677344 0.538224031 1 19.22203631 -10.52633953 5.98640952 1.000547523 0.625089569 0.18813502 0.238051782 0.001777687 0.000140655 0.235543294 0.057047598 2.98E-11 10.52633953 -0.375457954 EGVHGGLINKK ddPTM_HeLa_A485_30min_R1 2 EGVHGGLINKK 11 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ; ; 149.96 9.00E-07 2153150000 2813040 2918420 1968750 2966400 3357390 3759780 3931400 5620400 2211330 3977300 FALSE FALSE TRUE 3438791.043 3259703.832 2697072.552 3128446.921 3023116.463 3956636.267 3091424.273 4241988.088 2655123.647 2985832.307 1.151702671 1.091723679 0.903290029 1.047763772 1.012487023 1.3251368 1.035364333 1.420705402 0.889240712 1 21.50970171 EGVHGGLINKK ddPTM_HeLa_A486_30min_R1 3 EGVHGGLINKK 11 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ;; ;; 160.18 1.06E-07 2781346000 5720530 5660283 3172370 2459921.9 7623013 5701068 6875402 6869829 4327308 7028394 FALSE FALSE TRUE 5319550.388 5211741.561 4400796.623 5726822.501 6666863.628 4997728.194 5155103.699 5305718.904 4702402.542 5268438.395 1.009701545 0.989238398 0.835313293 1.087005688 1.265434485 0.948616615 0.978487991 1.007076197 0.892560981 1 22.32894397 -9.988710589 4.640641807 1 1.004455242 0 0.10959574 1.08E-07 2.37E-08 0.11191007 0.027141629 1.03E-10 9.988710589 0.004455243 EGVNQPAAVVMEDS(ph)SPHEALR ddPTM_HeLa_A485_30min_R1 1 EGVNQPAAVVMEDSSPHEALR 21 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EGVNQPAAVVMEDS(0.599)S(0.401)PHEALR 137.9 2.70E-07 171230000 130440 142540 168700 141910 238230 150970 161510 180870 152960 171130 TRUE FALSE FALSE 159455.928 159208.8131 231109.1502 149662.184 214510.9847 158874.5558 127002.0691 136511.3489 183657.669 128470.4404 1.241187681 1.239264165 1.798928605 1.164954238 1.669730282 1.236662342 0.988570357 1.062589561 1.429571413 1 16.97107692 -6.514043611 24.43775816 1.123572551 1.422586742 0.306215217 0.215974632 396.0699641 1095526.901 0.077653586 0.063409277 3.06E-07 6.514043611 0.299014191 EGVNQPAAVVMEDS(ph)SPHEALR ddPTM_HeLa_A486_30min_R1 1 EGVNQPAAVVMEDSSPHEALR 21 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EGVNQPAAVVMEDS(0.676)S(0.324)PHEALR 187.48 1.88E-19 449650000 332830 403780 385160 122590 465980 365000 402840 439670 332390 351940 TRUE FALSE FALSE 309500.3357 371783.0023 534304.2669 285395.7154 407532.4433 319970.011 302045.1712 339566.7389 361201.8328 263811.9333 1.173185503 1.409272877 2.025322586 1.081815033 1.544783961 1.212871636 1.144926113 1.287154583 1.369164118 1 18.0091503 -6.128716255 1.509523148 1.214218601 1.478423947 0.1676172 0.255140493 0.752787767 3.454148151 0.108747724 0.109383767 7.44E-07 6.128716255 0.264205345 EGVNQPAAVVMEDSS(ph)PHEALR ddPTM_HeLa_A485_30min_R1 3 EGVNQPAAVVMEDSSPHEALR 21 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EGVNQPAAVVMEDS(0.055)S(0.945)PHEALR;EGVNQPAAVVMEDS(0.369)S(0.631)PHEALR;EGVNQPAAVVMEDS(0.197)S(0.803)PHEALR ;; 198.03 1.64E-26 1187950000 968198 1050783 1178227 932085 1487640 969604 1189911 1156668 1185740 1230785 TRUE FALSE FALSE 1183570.305 1173662.931 1614102.197 983002.4434 1339525.338 1020370.966 935676.7942 872993.3594 1423707.142 923972.9504 1.280957743 1.270235163 1.74691499 1.063886603 1.449745187 1.104329911 1.012666868 0.944825667 1.540853703 1 19.81749109 -6.2738411 23.59167101 1.110345021 1.362014208 0.227645656 0.222307574 544.2388256 1035295.673 0.076203011 0.067744502 5.32E-07 6.2738411 0.251669187 EGVNQPAAVVMEDSS(ph)PHEALR ddPTM_HeLa_A486_30min_R1 3 EGVNQPAAVVMEDSSPHEALR 21 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EGVNQPAAVVMEDS(0.044)S(0.956)PHEALR;EGVNQPAAVVMEDS(0.286)S(0.714)PHEALR;EGVNQPAAVVMEDS(0.25)S(0.75)PHEALR ;; 170.1 6.97E-14 765690000 704030 839940 752860 279860 1076020 794840 896680 906810 662820 734760 TRUE FALSE FALSE 654681.1326 773380.0954 1044387.554 651528.2233 941055.5381 696780.7221 672321.1799 700349.1585 720273.7713 550771.3135 1.188662366 1.404176428 1.896227216 1.182937832 1.708613929 1.265099879 1.220690264 1.271578859 1.307754695 1 19.07109389 -6.490397271 22.62100913 1.225531383 1.479945587 0.272393393 0.21544117 290.9697629 202639.5836 0.074045292 0.065216649 3.23E-07 6.490397271 0.254414204 EGVQGPLNVS(ph)LSEEGK ddPTM_HeLa_A485_30min_R1 2 EGVQGPLNVSLSEEGK 16 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 EGVQGPLNVS(1)LSEEGK;EGVQGPLNVS(0.998)LS(0.002)EEGK ; 164.2 6.41E-12 461730000 564320 495520 401210 855220 633030 572230 843050 760680 474100 1059420 TRUE FALSE FALSE 689851.0371 553466.7535 549634.2747 901938.5031 570003.3105 602191.078 662925.4804 574122.0373 569247.5213 795326.0912 0.867381373 0.695899153 0.691080402 1.134048679 0.716691326 0.757162483 0.833526635 0.72186999 0.715741037 1 19.60118697 EGVQGPLNVS(ph)LSEEGK ddPTM_HeLa_A486_30min_R1 1 EGVQGPLNVSLSEEGK 16 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 EGVQGPLNVS(0.998)LS(0.002)EEGK 175.56 1.29E-12 427610000 317120 325590 168340 167480 275370 342940 462940 367700 218320 503500 TRUE FALSE FALSE 294891.5256 299789.0626 233525.7563 389901.904 240830.5269 300631.5496 347107.5155 283982.7368 237244.1534 377420.3228 0.781334517 0.794310864 0.61874187 1.033070771 0.638096341 0.796543089 0.919684221 0.752430963 0.628594008 1 18.52581258 -10.21649428 3.532010982 1.000349679 0.777685237 0.230277871 0.123953563 51287321.24 80813639.31 213641.3228 0.029729559 6.07E-11 10.21649428 -0.222664441 EGVQGPLNVS(ph)LSEEGKSQEQILEILR ddPTM_HeLa_A485_30min_R1 1 EGVQGPLNVSLSEEGKSQEQILEILR 26 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 EGVQGPLNVS(0.601)LS(0.397)EEGKS(0.002)QEQILEILR 48.106 0.022218 35542000 9109.8 9918.6 8631.9 11049 21165 14572 26786 40513 9683.9 13807 TRUE FALSE FALSE 11136.24358 11078.49399 11825.19901 11652.57889 19057.73829 15334.96739 21062.95228 30577.12323 11627.3699 10365.169 1.074390932 1.068819427 1.140859258 1.124205393 1.838632664 1.479471043 2.032089615 2.94998791 1.121773307 1 13.33945602 -5.756564802 6.920558735 1.837791377 1.099833524 0.257028129 0.511985333 0.169009208 40.96007302 0.154045807 0.188490759 1.75E-06 5.756564802 -0.737957852 EGVTPWAS(ph)FK ddPTM_HeLa_A485_30min_R1 2 EGVTPWASFK 10 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EGVTPWAS(1)FK;EGVTPWAS(1)FK ; 142.83 6.17E-06 432380000 659450 518100 359120 905310 728440 507020 1000420 923800 591810 1216880 TRUE FALSE FALSE 806142.3774 578687.2881 491973.4322 954764.7929 655913.9559 533566.7832 786672.0943 697236.6015 710580.8386 913534.211 0.882443556 0.633459898 0.538538597 1.045133046 0.717996051 0.584068748 0.861130415 0.763229875 0.777837141 1 19.80109923 -10.3619193 0.36009698 1.156183044 0.73467486 0.210811636 0.142710977 34.04995352 2.704764799 5.096300611 0.1118493 4.35E-11 10.3619193 -0.421508184 EGVTPWAS(ph)FK ddPTM_HeLa_A486_30min_R1 2 EGVTPWASFK 10 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EGVTPWAS(1)FK;EGVTPWAS(1)FK ; 154.28 2.46E-06 642420000 1372420 1460600 623260 742200 1002920 1679810 2168490 2174000 1006690 1973430 TRUE FALSE FALSE 1276220.445 1344856.737 864602.9635 1727879.109 877124.4217 1472572.121 1625910.866 1679027.658 1093950.7 1479270.283 0.862736486 0.909135235 0.58447937 1.168061799 0.592943988 0.995471982 1.099130351 1.13503778 0.7395205 1 20.49645425 -6.481516612 24.99640086 1.010764889 0.830108118 0.17513601 0.183042208 825.8385741 499080.0905 0.061374606 0.054121227 3.30E-07 6.481516612 -0.180656771 EGVTPWAS(ph)FKK ddPTM_HeLa_A485_30min_R1 3 EGVTPWASFKK 11 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EGVTPWAS(1)FKK;EGVTPWAS(1)FKK;EGVTPWAS(1)FKK ;; 109.83 0.00033423 5907498000 1987610 1371897 906719 2466720 2167230 1704344 3189350 3435780 1668717 3743670 TRUE FALSE FALSE 2429746.987 1532328.42 1242152.09 2601470.668 1951452.972 1793580.816 2507919.318 2593149.568 2003613.196 2810441.966 0.864542665 0.54522685 0.441977491 0.925644685 0.694358039 0.638184612 0.892357625 0.922683905 0.712917477 1 21.42236559 -7.217684523 0.377512243 0.989761494 0.626057442 0.273821957 0.149660104 1.546507838 0.624350259 0.194345774 0.181476929 6.06E-08 7.217684523 -0.363704052 EGVTPWAS(ph)FKK ddPTM_HeLa_A486_30min_R1 2 EGVTPWASFKK 11 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EGVTPWAS(1)FKK;EGVTPWAS(1)FKK ; 108.58 0.00036232 3387940000 2031800 2130850 745239 1107680 1650770 2692860 3346430 3723350 1340360 2829650 TRUE FALSE FALSE 1889381.312 1961993.686 1033815.499 2578735.019 1443715.034 2360642.312 2509117.819 2875624.485 1456543.484 2121087.222 0.890760782 0.924994345 0.487398862 1.215760951 0.680648593 1.112939764 1.182939482 1.35573137 0.686696647 1 21.01637252 -6.286235024 24.00636616 1.097099594 0.845935817 0.184484592 0.23521639 738.1593929 714659.5657 0.079846756 0.070455549 5.17E-07 6.286235024 -0.251163778 EHALLAYTLGVK ddPTM_HeLa_A485_30min_R1 4 EHALLAYTLGVK 12 0 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ;;; ;;; 167.18 6.98E-10 994640000 937170 981140 885910 1141980 1336170 1258270 1587100 1648720 1023200 1535800 FALSE FALSE TRUE 1145640.233 1095875.788 1213644.975 1204363.476 1203136.223 1324151.072 1248003.12 1244368.835 1228546.855 1152953.324 0.99365708 0.950494495 1.052640163 1.044589968 1.043525525 1.148486277 1.08244028 1.079288128 1.065565126 1 20.13690268 -4.865763306 4.573504922 1.071110683 0.972421451 0.49613579 0.03712334 0.156895501 5.545699755 0.009985289 0.022332341 1.36E-05 4.865763306 -0.098689232 EHALLAYTLGVK ddPTM_HeLa_A486_30min_R1 4 EHALLAYTLGVK 12 0 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ;;; ;;; 164.04 2.43E-07 849890000 1326170 1380860 1088020 660630 1853640 1608640 1831490 1686800 1340430 1662470 FALSE FALSE TRUE 1233212.331 1271435.625 1509330.482 1537980.026 1621139.187 1410182.352 1373231.83 1302752.463 1456619.552 1246176.691 0.989596692 1.020269143 1.211168924 1.234158878 1.300890314 1.131607068 1.101955959 1.045399478 1.168870805 1 20.24907721 -6.762298459 3.679630661 1.080612295 1.156899996 0.11104805 0.096072348 0.582815889 16.95769817 0.045671487 0.031847632 1.73E-07 6.762298459 0.076287701 EHAPLAS(ph)PVENK ddPTM_HeLa_A486_30min_R1 1 EHAPLASPVENK 12 0 Q9ULJ3 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 EHAPLAS(1)PVENK 108.34 0.00035085 86784000 202520 170990 122260 77457 155860 186340 208330 173230 161110 230270 TRUE FALSE FALSE 188324.3938 157440.1297 169602.3462 180323.8105 136310.5855 163351.2654 156203.6305 133789.3106 175075.1445 172608.8932 1.091046877 0.912120614 0.982581738 1.044695943 0.789707778 0.946366449 0.904957025 0.775100912 1.01428809 1 17.39714727 -5.738078988 24.99926025 0.895884198 0.999002705 0.254073937 0.084693909 321.0075305 343526.4699 0.023821528 0.030734706 1.83E-06 5.738078988 0.103118507 EHAPSIIFMDEIDSIGSSR ddPTM_HeLa_A486_30min_R1 1 EHAPSIIFMDEIDSIGSSR 19 0 P62195-2;P62195;J3QSA9;J3QQM1 P62195-2 PSMC5 26S protease regulatory subunit 8 0 0 93.152 0.0017424 9452500 12232 15670 11653 4617.3 16460 12629 17866 17619 15573 10906 FALSE FALSE TRUE 11374.59997 14428.25213 16165.35368 10749.30775 14395.43332 11070.96238 13395.73783 13607.53832 16922.88018 8175.066614 1.391377037 1.764909427 1.977397181 1.314889316 1.760894926 1.354235128 1.638609013 1.664517118 2.070060218 1 12.99701477 -5.261322872 24.99998538 1.576161399 1.716596011 0.053333739 0.302549855 39.99931635 8581919.103 0.081222059 0.129851451 5.48E-06 5.261322872 0.140434612 EHASIDAQSGAGVPNPSTSAS(ph)PK ddPTM_HeLa_A486_30min_R1 1 EHASIDAQSGAGVPNPSTSASPK 23 0 Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 Q8IXJ6-5 SIRT2 NAD-dependent protein deacetylase sirtuin-2 1 0 EHASIDAQSGAGVPNPS(0.005)T(0.001)S(0.278)AS(0.716)PK 171.99 9.14E-15 211050000 358750 355150 219120 29602 367220 265830 375350 317250 314670 156730 TRUE FALSE FALSE 333603.4776 327006.6206 303969.1322 68914.952 321159.8434 233034.5974 281433.46 245019.1005 341945.849 117483.7879 2.839570324 2.783419113 2.587328327 0.586591165 2.733652441 1.98354685 2.395508905 2.085556697 2.910579027 1 16.84210216 -5.018875337 24.94669935 2.017634241 2.7799649 0.220241704 0.674212548 1120.149628 1480455.851 0.17679027 0.313032752 9.57E-06 5.018875337 0.762330658 EHASSCPPSITNSMVDIPIVLINGCPEPGSS(ph)PPQR ddPTM_HeLa_A485_30min_R1 1 EHASSCPPSITNSMVDIPIVLINGCPEPGSSPPQR 35 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 EHASSCPPSITNSMVDIPIVLINGCPEPGS(0.021)S(0.979)PPQR 144.55 1.62E-09 30840000 1694.7 9761.5 14331 2483.3 6185.2 8172.6 3724.9 6061.3 12348 2102.6 TRUE FALSE FALSE 2071.680168 10903.02251 19632.63326 2618.956391 5569.37977 8600.504699 2929.044685 4574.756671 14826.13034 1578.460515 1.312468794 6.907377413 12.43783615 1.659183974 3.52836179 5.448666352 1.855633801 2.898239536 9.392778718 1 10.62430246 EHDYRDEHFDFIQSHIR ddPTM_HeLa_A485_30min_R1 2 EHDYRDEHFDFIQSHIR 17 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 0 ; ; 207.53 8.93E-26 455510000 92371 89993 99629 82404 108158 66027 84914 86571 80234 101256 FALSE FALSE TRUE 112918.6103 100516.8985 136485.913 86905.52186 97389.40975 69484.07162 66771.43022 65339.32651 96336.22785 76014.74268 1.48548303 1.32233426 1.795518977 1.143271934 1.281191073 0.914086783 0.878401056 0.85956124 1.267336104 1 16.21399163 -5.762054876 1.641945398 0.976363405 1.501928254 0.605404148 0.178365073 0.241828504 1.351267007 0.063295716 0.085069488 1.73E-06 5.762054876 0.525564849 EHDYRDEHFDFIQSHIR ddPTM_HeLa_A486_30min_R1 2 EHDYRDEHFDFIQSHIR 17 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 0 ; ; 179.14 5.53E-18 126239000 68558 22799.9 41766 24360 78100 40508 32256 44512 19487.1 43300 FALSE FALSE TRUE 63752.43823 20993.15289 57938.91373 56711.31109 68303.96975 35510.53482 24185.20763 34377.58929 21176.25752 32457.39816 1.964188193 0.646790996 1.78507573 1.747253763 2.104419134 1.09406597 0.74513698 1.059160353 0.65243238 1 14.98625974 -6.478831957 8.339775427 0.875722605 1.607123051 0.488645028 0.382678705 0.316932357 56.33832672 0.138234093 0.120600197 3.32E-07 6.478831957 0.731400446 EHDYRDEHLDFIQSHLR ddPTM_HeLa_A485_30min_R1 1 EHDYRDEHLDFIQSHLR 17 1 O43237;O43237-2;B4E2E0 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 0 169.61 1.45E-12 219680000 23933 19959 19508 19470 24782 15367 21348 21197 17902 30113 FALSE FALSE TRUE 29256.81328 22293.03143 26724.821 20533.5968 22314.61707 16171.59236 16786.8254 15998.40251 21494.76719 22606.38329 1.294183723 0.986138789 1.182180301 0.908309681 0.987093635 0.715355135 0.742570149 0.707694031 0.950827336 1 14.46444258 -5.487791209 1.187820557 0.806338303 1.166374268 0.545158634 0.123627255 0.354762879 1.012910271 0.045409265 0.090745226 3.25E-06 5.487791209 0.360035965 EHDYRDEHLDFIQSHLR ddPTM_HeLa_A486_30min_R1 2 EHDYRDEHLDFIQSHLR 17 1 O43237;O43237-2;B4E2E0 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 0 ; ; 180.81 5.01E-18 269500000 103036 49660 64766 31192 112090 83072 59867 64859 36874 80651 FALSE FALSE TRUE 95813.70848 45724.76074 89845.12969 72616.55236 98030.627 72823.42125 44887.64339 50092.02156 40070.26801 60455.46465 1.584864313 0.756337926 1.486137444 1.201157791 1.621534589 1.20457963 0.742491083 0.828577232 0.662806386 1 15.88358513 -6.687890798 4.909727403 0.794009335 1.308797604 0.508179571 0.242664233 0.169364218 7.510408581 0.092839027 0.069986426 2.05E-07 6.687890798 0.514788269 EHHWVPR ddPTM_HeLa_A485_30min_R1 1 EHHWVPR 7 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 0 86.086 0.026792 54008000 17971 22979 24782 19932 24825 20927 28867 30494 22934 26607 FALSE FALSE TRUE 21968.58695 25666.19416 33949.89307 21020.83469 22353.33583 22022.70536 22699.32963 23015.29869 27536.64344 19974.36457 1.09983909 1.284956729 1.699673246 1.052390659 1.119101224 1.102548484 1.136423116 1.152241845 1.378599221 1 14.28586199 EHHWVPR ddPTM_HeLa_A486_30min_R1 1 EHHWVPR 7 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 0 94.407 0.020232 34568000 30914 35424 31536 10135 48570 34875 37042 37434 26334 33853 FALSE FALSE TRUE 28747.08824 32616.87323 43747.58376 23594.79219 42477.8977 30572.47708 27773.69981 28911.09538 28616.65232 25375.98845 1.132846048 1.28534395 1.723975554 0.929807808 1.673940614 1.204779752 1.094487407 1.139309132 1.127705917 1 14.6311764 -6.515032729 23.9566575 1.108791593 1.35277947 0.233652429 0.220473035 332.3033639 1014649.523 0.078285444 0.063513293 3.05E-07 6.515032729 0.243987876 EHIKNPDWR ddPTM_HeLa_A485_30min_R1 2 EHIKNPDWR 9 1 Q14974;J3KTM9;Q14974-2 Q14974 KPNB1 Importin subunit beta-1 0 0 ; ; 130.79 0.00081204 527650000 688060 873290 770070 814750 1181720 951920 1146180 1175310 850080 1155460 FALSE FALSE TRUE 841116.5732 975413.6689 1054950.938 859257.7294 1064063.808 1001761.059 901289.2796 887063.3797 1020683.259 867425.0867 0.969670564 1.124493266 1.216186798 0.990584366 1.226692453 1.154867521 1.039039905 1.022639757 1.176681738 1 19.72637964 -10.09507203 4.976900627 0.99999674 1.104031564 0.107904233 0.08813467 3.13E-06 5.70E-07 0.083792515 0.020322033 8.03E-11 10.09507203 0.104034824 EHIKNPDWR ddPTM_HeLa_A486_30min_R1 2 EHIKNPDWR 9 1 Q14974;J3KTM9;Q14974-2 Q14974 KPNB1 Importin subunit beta-1 0 0 ; ; 131.82 0.000774 551360000 686810 665170 474040 258669 742180 605570 707420 729770 518230 761520 FALSE FALSE TRUE 638668.1657 612459.5067 657600.9832 602194.5044 649088.8638 530860.9304 530416.0337 563617.3018 563150.5937 570830.4353 1.118840423 1.072927211 1.152007571 1.054944634 1.137095753 0.929980074 0.929200689 0.987363789 0.986546194 1 19.12270273 -6.261128352 24.99999909 0.963489792 1.104851457 0.808188961 0.034208396 11.74377477 943978.4175 0.011399366 0.010749693 5.48E-07 6.261128352 0.141361665 EHLELFWSR ddPTM_HeLa_A486_30min_R1 1 EHLELFWSR 9 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 79.974 0.028599 87103000 88193 98790 69112 36511 101080 86793 89049 93779 81839 98012 FALSE FALSE TRUE 82011.12613 90961.52061 95874.01728 84999.45316 88401.60387 76085.36211 66767.99834 72427.56888 88932.87041 73469.15725 1.116266052 1.238091248 1.304955996 1.156940631 1.203247828 1.035609567 0.908789495 0.985822781 1.210478978 1 16.16485111 -6.27223211 4.856801168 1.018276185 1.209840615 0.517117578 0.084716582 0.155229865 10.78889809 0.030549257 0.028232545 5.34E-07 6.27223211 0.19156443 EHMGDILYKLS(ph)S(ph)MK ddPTM_HeLa_A486_30min_R1 1 EHMGDILYKLSSMK 14 1 P38606-2;P38606 P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A 2 0 EHMGDILY(0.13)KLS(0.935)S(0.935)MK 49.627 0.018391 113950000 42061 59195 47294 22517 64050 55401 63149 62620 48902 64287 TRUE FALSE FALSE 39112.7411 54504.17262 65607.50338 52420.71395 56016.25176 48566.1879 47348.45228 48362.79298 53140.86473 48189.11676 0.811650923 1.131047346 1.361458931 1.0878123 1.162425367 1.007824819 0.982554889 1.003604055 1.102756562 1 15.55641974 -6.271301369 23.80711052 1.017273734 1.124639065 0.107438864 0.128824512 793.0670252 1914477.836 0.046704573 0.041732847 5.35E-07 6.271301369 0.107365331 EHMPNIILRK ddPTM_HeLa_A486_30min_R1 1 EHMPNIILRK 10 1 A0A2R8YEW7 A0A2R8YEW7 0 0 58.978 0.035491 90208000 505020 254810 192890 13552 280120 197560 311090 357560 319190 261730 FALSE FALSE TRUE 469620.7059 234617.9276 267582.1738 31549.74088 244984.7376 173187.0558 233251.9916 276151.3935 346857.6462 196191.1044 2.393690108 1.195864248 1.363885353 0.160811271 1.248704615 0.88274673 1.188901976 1.407563275 1.767958069 1 17.5819001 -4.218937749 3.048309312 1.10989638 2.674345435 0.474059855 0.39743386 0.42943091 5.397554355 0.105004416 1.703157614 6.04E-05 4.218937749 1.564449054 EHMQPTHPIR ddPTM_HeLa_A485_30min_R1 5 EHMQPTHPIR 10 0 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 ;;;; ;;;; 119.27 0.00059479 479672500 273516.4 303730.1 291473.4 259024.2 336868.8 291949.7 352897.5 408151.5 245777.9 347667.7 FALSE FALSE TRUE 334359.1796 339248.6931 399301.5399 273174.0362 303328.9595 307235.7349 277498.0662 308051.7047 295103.2701 261000.5407 1.281066999 1.299800729 1.529887788 1.046641648 1.162177513 1.177145971 1.063208779 1.180272285 1.130661528 1 17.99369327 -5.275573553 24.98039055 1.119296984 1.363206737 0.670350458 0.083808535 455.9082216 805760.0632 0.023082274 0.034423322 5.30E-06 5.275573553 0.243909753 EHMQPTHPIR ddPTM_HeLa_A486_30min_R1 6 EHMQPTHPIR 10 0 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 ;;;;; ;;;;; 107.51 0.001294 567394000 282608 351170 323992 111797 449257 345887 383908 376597 326496 367859 FALSE FALSE TRUE 262798.6386 323342.0103 449450.3792 260269.0659 392906.9979 303214.9787 287850.1578 290854.0842 354796.9362 275744.712 0.953050511 1.172613639 1.629951037 0.943876907 1.424894044 1.099622098 1.043900917 1.054794785 1.286686274 1 18.07297369 -6.456455978 24.99941179 1.096744766 1.232205905 0.090156755 0.202467798 478.0651723 179927.8501 0.070111862 0.061832807 3.50E-07 6.456455978 0.13546114 EHNSMWASLSS(ph)PDAEAVEPDFSSIER ddPTM_HeLa_A485_30min_R1 3 EHNSMWASLSSPDAEAVEPDFSSIER 26 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 EHNSMWAS(0.003)LS(0.173)S(0.824)PDAEAVEPDFSSIER;EHNSMWAS(0.006)LS(0.17)S(0.824)PDAEAVEPDFSSIER;EHNS(0.085)MWAS(0.3)LS(0.246)S(0.368)PDAEAVEPDFSSIER ;; 132.82 3.67E-06 380724000 63918 121912 150780 49789 157315 83496 112146 109296 111194 80236 TRUE FALSE FALSE 78136.33859 136168.5479 206559.7965 52508.847 141652.1662 87867.72145 88185.09095 82490.98463 133509.6159 60234.64183 1.297199356 2.260635139 3.429252506 0.871738345 2.351672757 1.458757266 1.464026153 1.369494067 2.216492234 1 15.87830582 -5.282400778 24.99826277 1.576687265 2.322189987 0.239156619 0.647223803 1186.603549 1415123.603 0.179270905 0.266219335 5.22E-06 5.282400778 0.745502722 EHNSMWASLSS(ph)PDAEAVEPDFSSIER ddPTM_HeLa_A486_30min_R1 3 EHNSMWASLSSPDAEAVEPDFSSIER 26 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 EHNSMWASLS(0.014)S(0.986)PDAEAVEPDFSSIER;EHNS(0.002)MWAS(0.006)LS(0.055)S(0.937)PDAEAVEPDFSSIER;EHNSMWASLS(0.049)S(0.951)PDAEAVEPDFSSIER ;; 174.1 2.42E-14 265767000 84318.4 106567 117710 18931.5 137228.8 64634 73487 82348.2 100209.5 44964 TRUE FALSE FALSE 78408.11558 98122.24281 163290.4644 44073.48875 120016.2843 56660.11423 55099.77533 63599.31251 108895.7401 33704.72173 2.326324371 2.911231358 4.844735574 1.307635443 3.560815165 1.681073491 1.63477912 1.886955573 3.23087492 1 15.04066309 -5.985953324 1.366051863 1.951606997 3.125664573 0.193839947 1.015240921 0.715490708 2.760620812 0.420299664 0.47938408 1.03E-06 5.985953324 1.174057576 EHPHS(ph)RS(ph)PS(ph)PEPR ddPTM_HeLa_A485_30min_R1 4 EHPHSRSPSPEPR 13 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 3 0 EHPHS(1)RS(1)PS(1)PEPR;EHPHS(1)RS(1)PS(1)PEPR;EHPHS(1)RS(1)PS(1)PEPR;EHPHS(1)RS(1)PS(1)PEPR ;;; 102.03 0.0012336 7030020000 1389620 1932650 1967510 1522460 2137440 1767940 1798190 2068890 1826160 2034310 TRUE FALSE FALSE 1698736.175 2158656.606 2695373.824 1605628.135 1924628.969 1860506.605 1413992.017 1561491.484 2192653.561 1527193.956 1.112325104 1.413479013 1.764919128 1.051358361 1.260238728 1.218251682 0.92587586 1.022457873 1.435740073 1 20.54245187 -5.30667044 24.99994007 1.132024619 1.428565713 0.316134284 0.201971858 514.3316317 284278.3719 0.057613345 0.085454836 4.94E-06 5.30667044 0.296541094 EHPHS(ph)RS(ph)PS(ph)PEPR ddPTM_HeLa_A486_30min_R1 3 EHPHSRSPSPEPR 13 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 3 0 EHPHS(1)RS(1)PS(1)PEPR;EHPHS(1)RS(1)PS(1)PEPR;EHPHS(1)RS(1)PS(1)PEPR ;; 125.73 5.70E-05 4238230000 1239006 1430300 1440164 611320 1724610 1355486 1456094 1573810 1367613 1454305 TRUE FALSE FALSE 1152158.078 1316957.819 1997834.07 1423183.854 1508293.332 1188259.919 1091763.88 1215487.819 1486158.796 1090137.562 1.056892376 1.20806572 1.832644007 1.305508501 1.383580738 1.090009151 1.001491847 1.114985724 1.363276386 1 20.05607877 -6.259624808 24.25014353 1.114110424 1.372571804 0.254073425 0.207694565 158.1955753 2114151.192 0.07354491 0.069993805 5.50E-07 6.259624808 0.25846138 EHPSLLPHSACFPDPSTASTSQSAAHSNDS(ph)PPPPSAAAPSSAS(ph)PHASR ddPTM_HeLa_A485_30min_R1 1 EHPSLLPHSACFPDPSTASTSQSAAHSNDSPPPPSAAAPSSASPHASR 48 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 2 0 EHPSLLPHSACFPDPS(0.023)T(0.025)AS(0.001)T(0.001)SQS(0.002)AAHS(0.04)NDS(0.908)PPPPSAAAPS(0.265)S(0.173)AS(0.486)PHAS(0.076)R 127.98 2.48E-11 269840000 8667.9 28782 34217 4512.1 33066 11005 18339 14289 21476 7248.5 TRUE FALSE FALSE 10596.04445 32147.80453 46875.29219 4758.584598 29773.83294 11581.20478 14420.72283 10784.60035 25786.03621 5441.582349 1.947235891 5.907804471 8.614275993 0.874485452 5.471539532 2.128278879 2.650097326 1.981886822 4.738701826 1 12.40981052 -5.27696321 24.95418843 2.823615622 5.531575794 0.282042338 2.037595115 1008.169283 1620605.8 0.562882705 0.838262771 5.28E-06 5.27696321 2.707960172 EHQTSAYS(ph)PPR ddPTM_HeLa_A485_30min_R1 3 EHQTSAYSPPR 11 0 H3BRF9;Q96K21-2;Q96K21;Q96K21-4;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 EHQTS(0.002)AY(0.009)S(0.989)PPR;EHQTS(0.012)AY(0.013)S(0.976)PPR;EHQT(0.001)S(0.044)AY(0.009)S(0.947)PPR ;; 103.6 0.00064988 1537870000 935080 1493270 1664760 729810 1637340 1241360 1216780 1325490 1359380 1027520 TRUE FALSE FALSE 1143085.32 1667894.937 2280624 769677.6723 1474320.681 1306355.69 956805.0128 1000411.499 1632195.097 771378.1741 1.481874077 2.162227287 2.956557597 0.997795502 1.911281302 1.693534681 1.240383829 1.296914448 2.115946694 1 19.5570788 -5.275086097 24.99940153 1.496236842 2.196420492 0.330523772 0.477982045 920.9538827 1687092.238 0.133395905 0.199086957 5.31E-06 5.275086097 0.70018365 EHQTSAYS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 EHQTSAYSPPR 11 0 H3BRF9;Q96K21-2;Q96K21;Q96K21-4;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 EHQTS(0.001)AY(0.002)S(0.997)PPR;EHQTSAYS(1)PPR;EHQTS(0.001)AY(0.001)S(0.998)PPR ;; 134.13 2.87E-05 1125330000 685230 719090 668620 83965 799340 617810 588360 653310 688430 481071 TRUE FALSE FALSE 637198.9155 662106.6895 927527.5703 195474.7634 699079.3237 541590.8836 441146.105 504565.5747 748103.6667 360607.6904 1.767014217 1.836085883 2.572123654 0.542070423 1.938614573 1.501883898 1.223340813 1.399209135 2.074563817 1 18.46007064 -5.23958706 24.99933102 1.420920551 2.036175594 0.311726408 0.457230501 1063.866484 1217075.294 0.119844913 0.207351415 5.76E-06 5.23958706 0.615255043 EHS(ph)AFGDRPEKR ddPTM_HeLa_A485_30min_R1 1 EHSAFGDRPEKR 12 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 EHS(1)AFGDRPEKR 139.58 2.25E-06 227190000 100210 89752 68567 129940 132290 105500 183080 186100 84388 167170 TRUE FALSE FALSE 122501.3688 100247.7157 93932.78661 137038.2932 119118.7431 111023.8169 143963.4624 140458.6832 101323.8975 125497.5955 0.976125226 0.798801883 0.748482759 1.091959512 0.949171517 0.884668877 1.1471412 1.119214138 0.807377202 1 16.9373002 -5.261559314 24.99979433 1.004116377 0.836903151 0.295079271 0.112286498 13.21314722 2754444.305 0.031513951 0.050296458 5.48E-06 5.261559314 -0.167213227 EHS(ph)AFGDRPEKR ddPTM_HeLa_A486_30min_R1 2 EHSAFGDRPEKR 12 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 EHS(1)AFGDRPEKR;EHS(1)AFGDRPEKR ; 164.15 1.14E-10 720070000 396650 412360 213422 257370 409740 435450 608160 581480 318360 669530 TRUE FALSE FALSE 368846.8833 379683.0918 296064.714 599170.3668 358346.5885 381728.6063 455991.9355 449089.6976 345955.7011 501875.3301 0.734937267 0.756528702 0.58991685 1.193862959 0.714015149 0.760604444 0.908576111 0.894823217 0.689325975 1 18.93696951 -14 0.024521926 2.088197911 4.09E-10 0.115485462 0.157787488 5192.453494 9.595666269 588.7679596 280.7847437 1.00E-14 14 -2.08819791 EHS(ph)PDS(ph)DAYNS(ph)GDDKNEK ddPTM_HeLa_A486_30min_R1 1 EHSPDSDAYNSGDDKNEK 18 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 EHS(1)PDS(1)DAY(0.001)NS(1)GDDKNEK 157.68 1.45E-08 984420000 953520 759030 238870 1189400 572250 1197100 1931100 1565600 602080 2592600 TRUE FALSE FALSE 886683.172 698881.6985 331366.8612 2768983.309 500473.069 1049413.973 1447918.355 1209147.057 654268.7792 1943396.085 0.456254481 0.359618764 0.170509174 1.424816758 0.257524996 0.539989754 0.745045421 0.622182511 0.3366626 1 20.89014854 -11.64299272 2.030202316 9.998425765 0.554632366 0.140717678 0.336050345 11450247.88 396823.5231 476618651.7 0.083386613 2.28E-12 11.64299272 -9.4437934 EHS(ph)PSESEKEVVGADPR ddPTM_HeLa_A485_30min_R1 2 EHSPSESEKEVVGADPR 17 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 EHS(0.858)PS(0.142)ESEKEVVGADPR;EHS(0.768)PS(0.186)ES(0.046)EKEVVGADPR ; 129.02 8.66E-06 1119270000 977680 882270 680880 1441360 1314500 1069210 1679390 1462170 999590 2182220 TRUE FALSE FALSE 1195161.543 985443.8018 932765.8458 1520097.847 1183623.765 1125192.182 1320574.607 1103570.515 1200198.544 1638232.715 0.729543204 0.601528582 0.569373226 0.927888836 0.722500383 0.686832934 0.80609708 0.673634768 0.732617859 1 20.64370888 -14 0.23048527 2.516144615 0.684605699 0.450073559 0.094680215 157.2545462 1.574275763 111.3638868 0.17030324 1.00E-14 14 -1.831538917 EHS(ph)PSESEKEVVGADPR ddPTM_HeLa_A486_30min_R1 3 EHSPSESEKEVVGADPR 17 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 EHS(0.781)PS(0.148)ES(0.071)EKEVVGADPR;EHS(0.634)PS(0.305)ES(0.06)EKEVVGADPR;EHS(0.786)PS(0.212)ES(0.001)EKEVVGADPR ;; 110.75 9.20E-05 2089010000 3259560 2954490 1428180 1052700 2573510 3386290 4336700 3974900 2357460 4086100 TRUE FALSE FALSE 3031081.676 2720365.452 1981209.544 2450738.801 2250716.379 2968523.969 3251611.791 3069902.041 2561806.531 3062913.964 0.989607188 0.888162542 0.646838131 0.800133085 0.734828469 0.969182943 1.061607289 1.002281513 0.836395198 1 21.54647341 -6.307536222 9.887656489 0.979701147 0.806363726 0.396986414 0.09957351 0.646523552 136.0438359 0.037022015 0.032698786 4.93E-07 6.307536222 -0.173337421 EHSAFGDRPEKR ddPTM_HeLa_A485_30min_R1 2 EHSAFGDRPEKR 12 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 0 ; ; 72.29 0.0086721 58654000 31641 40412 31471 27138 40600 41541 51625 66102 35414 38250 FALSE FALSE TRUE 38679.43129 45137.83186 43113.43252 28620.48022 36557.72144 43716.02253 40594.89701 49890.38086 42521.26496 28714.97894 1.347012351 1.571926344 1.501426576 0.996709079 1.273123742 1.522411791 1.413718502 1.737434005 1.480804324 1 14.80951588 -6.267089245 24.74418354 1.475891149 1.341147571 0.022086166 0.224316411 1211.131405 5304262.14 0.079387025 0.071863578 5.41E-07 6.267089245 -0.134743579 EHSAFGDRPEKR ddPTM_HeLa_A486_30min_R1 2 EHSAFGDRPEKR 12 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 0 ; ; 180.2 6.64E-13 88197000 49004 44285 32545 20607.6 52841 45926 50090 48667 30023 53888 FALSE FALSE TRUE 45569.07266 40775.69532 45147.29559 47975.53425 46213.18906 40260.11706 37556.9522 37586.58649 32625.41781 40394.09405 1.128112258 1.009446957 1.117670705 1.187686848 1.144058065 0.996683253 0.929763449 0.930497078 0.807677919 1 15.30185675 -6.519430057 2.676153049 0.909926725 1.114928907 0.705472269 0.061101829 0.160938724 2.3259029 0.026235216 0.02068405 3.02E-07 6.519430057 0.205002182 EHSLQVS(ph)PSLEK ddPTM_HeLa_A485_30min_R1 6 EHSLQVSPSLEK 12 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 EHSLQVS(0.999)PS(0.001)LEK;EHSLQVS(1)PSLEK;EHSLQVS(0.999)PS(0.001)LEK;EHSLQVS(0.997)PS(0.003)LEK;EHSLQVS(1)PSLEK;EHSLQVS(0.997)PS(0.003)LEK ;;;;; 266.44 6.42E-34 5781490000 5472290 5499790 4283360 6673950 7145030 6164790 8264880 9098640 5230600 8835600 TRUE FALSE FALSE 6689582.031 6142942.599 5867953.109 7038530.989 6433645.725 6487568.872 6499020.87 6867184.274 6280333.442 6633047.527 1.008523157 0.926111651 0.884654163 1.061130794 0.969938132 0.978067599 0.979794106 1.035298518 0.946824731 1 22.66124043 -5.253587518 24.99800695 0.994844167 0.938397863 0.274350225 0.041770906 795.4674811 2532528.912 0.011164734 0.01892621 5.58E-06 5.253587518 -0.056446304 EHSLQVS(ph)PSLEK ddPTM_HeLa_A486_30min_R1 4 EHSLQVSPSLEK 12 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 EHSLQVS(0.998)PS(0.002)LEK;EHSLQVS(1)PSLEK;EHSLQVS(0.999)PS(0.001)LEK;EHSLQVS(0.998)PS(0.002)LEK ;;; 243.9 4.61E-28 5416050000 6168420 5902640 3526850 2428870 5963460 6308730 7603960 7093160 4604030 7580230 TRUE FALSE FALSE 5736045.612 5434893.309 4892540.772 5654532.108 5215467.24 5530423.035 5701368.782 5478202.311 5003111.027 5682091.069 1.009495543 0.956495284 0.861045821 0.995149856 0.91787815 0.973307708 1.003392714 0.964117302 0.880505252 1 22.43799052 EHSNPS(ph)PSQDTDGTK ddPTM_HeLa_A485_30min_R1 1 EHSNPSPSQDTDGTK 15 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 EHS(0.025)NPS(0.97)PS(0.005)QDTDGTK 72.772 0.00225 0 66341 67066 74059 83876 99796 88065 95624 109300 74300 129920 TRUE FALSE FALSE 81098.32658 74908.7853 101456.506 88457.93349 89859.95983 92675.94723 75193.15122 82494.00362 89211.32848 97533.335 0.831493423 0.768032645 1.040223898 0.906950772 0.921325615 0.950197665 0.770948222 0.845803167 0.914675259 1 16.57360777 -12.05698268 1.266064954 3.529754842 0.883892818 0.164841129 0.078798562 612271.0434 10952.03113 4448024.576 0.022785179 8.77E-13 12.05698268 -2.645862024 EHSPS(ph)ESEKEVVGADPR ddPTM_HeLa_A486_30min_R1 1 EHSPSESEKEVVGADPR 17 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 EHS(0.355)PS(0.627)ES(0.017)EKEVVGADPR 107.33 9.32E-05 646830000 829170 760630 385670 269150 693180 869800 1092600 1078600 665460 1149300 TRUE FALSE FALSE 771049.4648 700354.9086 535011.7526 626594.8021 606234.9008 762492.9195 819219.9237 833026.3257 723142.6086 861507.7993 0.894999982 0.81294088 0.621017886 0.727323424 0.703690554 0.885067924 0.950914112 0.96693997 0.83939183 1 19.71650433 -6.409604226 4.209066335 0.934765991 0.7472919 0.573018321 0.077048472 0.183285829 5.46361941 0.029816301 0.025799497 3.89E-07 6.409604226 -0.187474091 EHYPVSS(ph)PSSPS(ph)PPAQPGGVSR ddPTM_HeLa_A485_30min_R1 1 EHYPVSSPSSPSPPAQPGGVSR 22 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 EHYPVS(0.059)S(0.593)PS(0.257)S(0.293)PS(0.798)PPAQPGGVSR 88.186 0.0017122 366990000 178780 214120 189940 184810 238440 199970 240750 251690 184010 284730 TRUE FALSE FALSE 218548.9942 239159.4714 260206.7101 194905.7023 214700.0764 210440.12 189311.7958 189962.6329 220939.1192 213752.0511 1.022441624 1.118863984 1.217329653 0.911830793 1.004435164 0.984505734 0.885660721 0.888705544 1.033623388 1 17.70557874 -5.273681847 24.92769992 0.953732963 1.11947698 0.566296551 0.064537104 500.5867429 1019276.664 0.018498049 0.027658484 5.32E-06 5.273681847 0.165744017 EHYPVSSPSS(ph)PS(ph)PPAQPGGVSR ddPTM_HeLa_A485_30min_R1 2 EHYPVSSPSSPSPPAQPGGVSR 22 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 EHYPVS(0.001)S(0.003)PS(0.244)S(0.766)PS(0.986)PPAQPGGVSR;EHY(0.005)PVS(0.036)S(0.039)PS(0.211)S(0.735)PS(0.974)PPAQPGGVS(0.001)R ; 72.355 0.006014 1260150000 354960 495610 421760 350270 526210 508670 464940 536840 458820 414940 TRUE FALSE FALSE 433919.6274 553567.2783 577786.5749 369404.3632 473818.6848 535303.1746 365601.7708 405179.1483 550900.9655 311503.0944 1.392986571 1.777084364 1.854834142 1.185877026 1.52107216 1.71845219 1.173669788 1.300722707 1.768524857 1 18.24888697 -12.30817371 0.162393219 1.18E-12 1.672369661 0.282812384 0.242487358 93.62422055 1.438141583 33.62437903 1.094517454 4.92E-13 12.30817371 1.672369661 EHYPVSSPSS(ph)PSPPAQPGGVSR ddPTM_HeLa_A486_30min_R1 2 EHYPVSSPSSPSPPAQPGGVSR 22 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 EHYPVS(0.01)S(0.065)PS(0.265)S(0.66)PSPPAQPGGVSR;EHYPVSS(0.001)PS(0.115)S(0.882)PS(0.001)PPAQPGGVSR ; 163.32 6.69E-14 1344190000 248085 272146 129924 83969 248078 213005 271660 252334 173885 249710 TRUE FALSE FALSE 230695.5226 250580.1598 180234.0523 195484.0756 216961.744 186726.6088 203687.7947 194883.0566 188957.4918 187180.9907 1.232473029 1.338705169 0.962886518 1.04435859 1.159101377 0.9975725 1.088186327 1.041147693 1.00949082 1 17.5140744 -4.75735644 24.99997513 1.044235636 1.28558916 0.749361673 0.05721641 47.08051388 288264.6722 0.014411264 0.035344464 1.75E-05 4.75735644 0.241353524 EHYPVSSPSSPS(ph)PPAQPGGVSR ddPTM_HeLa_A486_30min_R1 1 EHYPVSSPSSPSPPAQPGGVSR 22 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 EHYPVS(0.007)S(0.006)PS(0.027)S(0.175)PS(0.786)PPAQPGGVSR 79.875 0.00013361 0 55520 61616 40974 31975 59337 81776 82859 89950 48146 81229 TRUE FALSE FALSE 51628.33471 56733.32376 56840.23012 74439.41593 51894.40016 71687.30856 62126.80181 69470.34859 52319.33405 60888.72969 0.847912823 0.931754104 0.93350987 1.222548349 0.852282523 1.177349387 1.020333354 1.140939365 0.859261382 1 15.89388759 -5.021505342 24.56319044 1.044811772 0.900533019 0.221793029 0.116723782 809.6991629 924832.5034 0.029371363 0.051541422 9.52E-06 5.021505342 -0.144278753 EHYVDLK ddPTM_HeLa_A486_30min_R1 1 EHYVDLK 7 0 Q32Q12;P22392-2;J3KPD9;E7ERL0;P15531;P15531-2;E5RHP0 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 87.616 0.025586 218480000 586630 770220 1011000 240540 1115400 626830 685840 746490 732870 710270 FALSE FALSE TRUE 545510.2664 709184.9621 1402486.276 559989.2762 975496.1313 549498.0877 514235.5779 576530.5228 796395.7617 532413.7689 1.024598345 1.332018448 2.634203616 1.051793377 1.832214319 1.032088424 0.965857023 1.082861782 1.495821123 1 19.02218836 -6.273894837 24.47269537 1.111162711 1.59124999 0.207355369 0.448732812 951.4536813 1869426.342 0.158346132 0.140667737 5.32E-07 6.273894837 0.480087279 EIAIVHS(ph)DAEK ddPTM_HeLa_A485_30min_R1 4 EIAIVHSDAEK 11 0 Q9H307 Q9H307 PNN Pinin 1 0 EIAIVHS(1)DAEK;EIAIVHS(1)DAEK;EIAIVHS(1)DAEK;EIAIVHS(1)DAEK ;;; 170.11 2.60E-08 821330000 2210890 3114330 907080 1660560 679060 1613120 1521690 1395600 824000 1486210 TRUE FALSE FALSE 2702694.853 3478523.802 1242646.639 1751272.188 611450.4021 1697580.469 1196568.5 1053326.912 989369.2418 1115725.199 2.42236606 3.117724514 1.1137569 1.569626813 0.548029571 1.521504104 1.072458076 0.944073785 0.88674993 1 20.08955031 -4.769186779 24.99919506 1.093724418 2.770045367 0.816567355 0.319983652 56.18132998 181287.0218 0.079886297 0.171372191 1.70E-05 4.769186779 1.676320949 EIAIVHS(ph)DAEK ddPTM_HeLa_A486_30min_R1 4 EIAIVHSDAEK 11 0 Q9H307 Q9H307 PNN Pinin 1 0 EIAIVHS(1)DAEK;EIAIVHS(1)DAEK;EIAIVHS(1)DAEK;EIAIVHS(1)DAEK ;;; 184.51 1.11E-10 588828000 2729860 1833570 566886 392430 566145 1262480 1174550 968690 1203050 3411640 TRUE FALSE FALSE 2538510.911 1688271.235 786399.4409 913596.8723 495133.815 1106728.054 880665.1669 748140.4334 1307331.343 2557343.138 0.992636019 0.660166096 0.307506423 0.35724454 0.193612585 0.432764785 0.344367228 0.292545972 0.511206855 1 21.28621432 -8.036525452 21.72271975 1.000000006 0.432560775 0.363745689 0.217089409 1172.550223 697349.4706 0.222629039 0.057482571 9.19E-09 8.036525452 -0.567439231 EIAIVHS(ph)DAEKEQEEEEQKQEMEVK ddPTM_HeLa_A485_30min_R1 2 EIAIVHSDAEKEQEEEEQKQEMEVK 25 2 Q9H307 Q9H307 PNN Pinin 1 0 EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK ; 198.7 1.20E-28 960870000 407940 252080 103820 737980 205400 296350 511780 432560 176453 781990 TRUE FALSE FALSE 498684.8456 281558.5632 142227.3383 778293.9787 184949.6548 311866.4278 402434.0221 326473.9818 211865.4986 587054.2845 0.849469732 0.479612483 0.24227289 1.325761517 0.315046938 0.531239505 0.685514156 0.556122305 0.360895924 1 19.16313439 -10.31588276 3.991438164 1.000755667 0.593334593 0.143782247 0.297227325 396907444.5 476444829.4 3300823.043 0.071665987 4.83E-11 10.31588276 -0.407421074 EIAIVHS(ph)DAEKEQEEEEQKQEMEVK ddPTM_HeLa_A486_30min_R1 4 EIAIVHSDAEKEQEEEEQKQEMEVK 25 2 Q9H307 Q9H307 PNN Pinin 1 0 EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK;EIAIVHS(1)DAEKEQEEEEQKQEMEVK ;;; 251.01 2.08E-50 2200370000 1292540 803580 168627 834230 346479 1129030 1557270 1158200 544346 3630580 TRUE FALSE FALSE 1201939.621 739901.3942 233923.8904 1942129.6 303020.373 989741.7577 1167624.575 894503.1433 591530.3496 2721459.137 0.441652643 0.271876724 0.08595532 0.713635407 0.111344818 0.363680551 0.429043581 0.328685127 0.217357792 1 21.37594894 -10.5950852 2.982128677 1.041582529 0.329232865 0.579334882 0.171469405 92263005.25 99294200.13 30202809.58 0.043206249 2.54E-11 10.5950852 -0.712349665 EIDCLS(ph)PEAQK ddPTM_HeLa_A485_30min_R1 4 EIDCLSPEAQK 11 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3;C9JTC6 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 EIDCLS(1)PEAQK;EIDCLS(1)PEAQK;EIDCLS(1)PEAQK;EIDCLS(1)PEAQK ;;; 229.75 2.33E-18 1716290000 2619090 2219570 2024650 3390550 3548690 2218090 3409360 3168270 2400540 4265760 TRUE FALSE FALSE 3201697.535 2479129.404 2773652.288 3575767.161 3195369.963 2334225.763 2680922.384 2391246.815 2882306.359 3202384.537 0.999785472 0.774151066 0.866120934 1.116595187 0.997809578 0.728902396 0.837164417 0.746708207 0.900050049 1 21.61071512 -6.247455725 24.82898528 0.826396734 0.94556966 0.185876266 0.110520946 1208.795457 2146303.696 0.037772616 0.037594374 5.66E-07 6.247455725 0.119172926 EIDCLS(ph)PEAQK ddPTM_HeLa_A486_30min_R1 4 EIDCLSPEAQK 11 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3;C9JTC6 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 EIDCLS(1)PEAQK;EIDCLS(1)PEAQK;EIDCLS(1)PEAQK;EIDCLS(1)PEAQK ;;; 258.23 2.48E-27 2224320000 3475170 4718430 3108370 1868520 4713470 4390160 5390210 5200360 3429250 4312470 TRUE FALSE FALSE 3231578.529 4344524.423 4312014.109 4350008.99 4122262.641 3848546.695 4041522.446 4016351.551 3726500.151 3232599.443 0.999684182 1.343972397 1.333915379 1.34566904 1.275216034 1.190542399 1.250239171 1.24245259 1.152787476 1 21.62426332 -8.216853233 1.021597427 0.998913109 1.26241356 0.380901034 0.096527187 0.863276554 1.800948113 0.092376818 0.030047468 6.07E-09 8.216853233 0.263500451 EIEHVMYHDWR ddPTM_HeLa_A485_30min_R1 1 EIEHVMYHDWR 11 0 C9JJ19;P82930 C9JJ19 MRPS34 "28S ribosomal protein S34, mitochondrial" 0 0 140.31 1.04E-05 63807000 23080 32349 24262 20580 28222 33601 29749 35713 25110 39419 FALSE FALSE TRUE 28214.06637 36131.93415 33237.52343 21704.23329 25412.11859 35360.2964 23392.88312 26954.33075 30149.34668 29592.56875 0.953417279 1.220979985 1.123171283 0.733435258 0.85873311 1.194904596 0.790498565 0.910847956 1.018814789 1 14.85294731 -5.160377611 24.99996617 0.928162023 1.111371674 0.246076245 0.135507689 53.35248879 13187.84919 0.03672493 0.063609444 6.91E-06 5.160377611 0.183209652 EIENSS(ph)PNR ddPTM_HeLa_A485_30min_R1 1 EIENSSPNR 9 0 E9PKY2;A0A0C4DFM7;Q5TAX3;X6R5G7;E9PRG2;Q5TAX3-2;E9PJN7;E9PQS7 E9PKY2 ZCCHC11 Terminal uridylyltransferase 4 1 0 EIENS(0.023)S(0.977)PNR 113.38 0.0011987 0 346480 459390 415700 453610 501660 411890 501860 540370 435500 625570 TRUE FALSE FALSE 423553.2807 513111.6643 569484.7287 478389.5657 451712.969 433455.9235 394633.5112 407843.4102 522900.8554 469626.9118 0.90189312 1.092594252 1.212632229 1.018658756 0.961854948 0.922979311 0.840312813 0.86844131 1.113438864 1 18.84115556 -5.679855687 3.401575602 0.936304727 1.076505254 0.210192854 0.099904335 0.323430455 7.423852336 0.03179338 0.041324739 2.09E-06 5.679855687 0.140200527 EIEPNYES(ph)PSSNNQDKDSSQASK ddPTM_HeLa_A486_30min_R1 2 EIEPNYESPSSNNQDKDSSQASK 23 1 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 EIEPNYES(0.967)PS(0.031)S(0.002)NNQDKDSSQASK;EIEPNYES(0.962)PS(0.032)S(0.006)NNQDKDSSQASK ; 164.41 1.32E-14 758320000 364940 350890 147534 213860 334140 459560 587220 532410 272890 571620 TRUE FALSE FALSE 339359.5906 323084.1985 204663.1159 497876.8879 292229.0455 402864.1597 440291.345 411191.8654 296544.3249 428482.6314 0.792003142 0.754019358 0.477646236 1.161953488 0.682009081 0.940211178 1.027559375 0.959646518 0.692080153 1 18.7088772 -5.255378344 24.99940305 0.916658563 0.682502576 0.344494745 0.156966278 590.4734648 2435465.665 0.041877551 0.070231271 5.55E-06 5.255378344 -0.234155987 EIEQEAAVELSQLRDPQHDLDR ddPTM_HeLa_A485_30min_R1 1 EIEQEAAVELSQLRDPQHDLDR 22 1 P47985 P47985 UQCRFS1 "Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11" 0 0 126.31 8.47E-06 29469000 8724.7 9417.3 8016 9307.3 8838.9 11212 12411 14000 8386.7 15768 FALSE FALSE TRUE 10665.47942 10518.57132 10981.45197 9815.734232 7958.868081 11799.04298 9759.288461 10566.47805 10069.83376 11837.32779 0.901003977 0.888593397 0.927696873 0.829218757 0.672353442 0.996765756 0.824450301 0.892640488 0.85068471 1 13.53105582 -11.98455153 0.685702025 1.643894836 0.863911092 0.203810351 0.080106729 2058.473469 74.9649641 1983.872499 0.029505304 1.04E-12 11.98455153 -0.779983744 EIES(ph)SPQYR ddPTM_HeLa_A485_30min_R1 2 EIESSPQYR 9 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EIES(0.5)S(0.5)PQYR;EIES(0.5)S(0.5)PQY(0.001)R ; 180.07 3.75E-08 2524270000 3141970 4039790 3818510 2920820 5073950 3730360 4117070 4837490 3521230 3912590 TRUE FALSE FALSE 3840890.387 4512208.299 5231135.75 3080377.001 4568769.722 3925675.881 3237424.361 3651087.993 4227908.562 2937253.319 1.307646965 1.536199915 1.780961729 1.048727047 1.555456485 1.336512536 1.102194469 1.243027957 1.439408898 1 21.48603626 -9.547815252 0.084845096 0.368081818 1.878512597 0.276954899 0.20058385 77.76980319 1.57706916 19.82352619 8.870504227 2.83E-10 9.547815252 1.510430779 EIES(ph)SPQYR ddPTM_HeLa_A486_30min_R1 4 EIESSPQYR 9 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EIES(0.5)S(0.5)PQYR;EIES(0.5)S(0.5)PQYR;EIES(0.5)S(0.5)PQYR;EIES(0.5)S(0.5)PQYR ;;; 180.97 3.56E-08 7148700000 5681930 6558870 5632670 1889820 7864550 5914240 6229570 6716030 5275700 5997770 TRUE FALSE FALSE 5283656.049 6039121.254 7813790.672 4399596.466 6878104.805 5184601.2 4670865.696 5186936.579 5733001.924 4495889.353 1.175219324 1.343253977 1.737985537 0.978582016 1.529865231 1.15318701 1.038919184 1.153706458 1.275165262 1 22.1001751 -6.42371619 8.745000245 1.12501906 1.352734775 0.248619808 0.199452301 0.512799496 41.39287233 0.068788863 0.060576249 3.77E-07 6.42371619 0.227715715 EIESEIDS(ph)EEELINK ddPTM_HeLa_A485_30min_R1 2 EIESEIDSEEELINK 15 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK ; 399.34 2.49E-135 157065000 201645 200900 163730 287060 270270 217900 316980 286710 207150 390560 TRUE FALSE FALSE 246500.2346 224393.5074 224300.5404 302741.3609 243360.9698 229308.9071 249254.6335 216393.923 248723.1049 293200.5797 0.840722194 0.765324228 0.765007152 1.032540117 0.830015309 0.78208886 0.850116442 0.73804057 0.848303592 1 18.16152843 -11.60433942 1.825398825 3.193615296 0.827047245 0.303713638 0.078108445 3305524.263 145896.3163 30034690.36 0.02026704 2.49E-12 11.60433942 -2.366568051 EIESEIDS(ph)EEELINK ddPTM_HeLa_A486_30min_R1 2 EIESEIDSEEELINK 15 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 EIESEIDS(1)EEELINK;EIESEIDS(1)EEELINK ; 392.91 1.65E-134 215550000 183286 193704 107698 76446 194329 197070 230160 220020 148032 238780 TRUE FALSE FALSE 170438.5979 178354.1896 149401.5499 177970.1514 169954.4448 172757.5071 172571.5336 169926.249 160863.5329 178987.9338 0.952235127 0.996459291 0.834701796 0.994313681 0.949530179 0.9651908 0.964151772 0.94937265 0.898739538 1 17.44950281 EIESS(ph)PQYR ddPTM_HeLa_A485_30min_R1 2 EIESSPQYR 9 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EIES(0.29)S(0.71)PQYR;EIES(0.396)S(0.604)PQYR ; 174.77 2.84E-06 3286460000 2869710 3453270 3455240 2783610 4538070 3385370 3930670 4451310 3339490 3612520 TRUE FALSE FALSE 3508067.089 3857099.887 4733477.061 2935671.566 4086243.817 3562622.738 3090850.244 3359619.243 4009695.011 2711985.248 1.293542099 1.422242208 1.745391891 1.082480655 1.506735267 1.313658598 1.139700242 1.238804395 1.478509153 1 21.3709179 -6.174797525 0.938884165 1.228403021 1.441175996 0.167867043 0.193513725 1.087344953 2.062983082 0.11067244 0.110983262 6.69E-07 6.174797525 0.212772974 EIESS(ph)PQYR ddPTM_HeLa_A486_30min_R1 1 EIESSPQYR 9 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EIES(0.247)S(0.753)PQYR 80.037 0.0081862 317130000 343180 397060 372070 122230 465060 352160 397030 422850 335380 391460 TRUE FALSE FALSE 319124.8542 365595.5195 516145.4684 284557.6172 406727.8383 308714.0797 297688.8946 326576.2858 364451.0084 293435.868 1.087545488 1.245912853 1.758971975 0.969743812 1.386087669 1.052066613 1.014493888 1.112939219 1.242012474 1 18.1626857 -6.271038537 24.73960158 1.086998096 1.295523003 0.202801973 0.203367391 1008.620907 2599478.998 0.071185648 0.063604389 5.36E-07 6.271038537 0.208524907 EIFDSR ddPTM_HeLa_A485_30min_R1 2 EIFDSR 6 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 159.19 0.010006 343510000 909100 1305670 1292110 963270 1504940 1331580 1429200 1628690 1209240 1343930 FALSE FALSE TRUE 1111326.159 1458356.749 1770115.258 1015891.001 1355102.889 1401299.47 1123839.745 1229251.224 1451923.376 1008912.984 1.101508431 1.445473268 1.754477627 1.006916371 1.343131579 1.388920047 1.113911469 1.218391718 1.43909673 1 19.94437032 -13.46228772 0.175769302 2.89E-17 1.385926488 0.161034545 0.206824857 198.6993239 2.251531575 70.45714151 0.70791543 3.45E-14 13.46228772 1.385926488 EIFDSR ddPTM_HeLa_A486_30min_R1 2 EIFDSR 6 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 127.66 0.017433 77699000 257840 301630 281630 90796 358660 280980 309060 322970 267320 321510 FALSE FALSE TRUE 239766.7475 277727.7403 390684.6783 211377.6766 313673.5184 246315.5444 231729.9191 249436.7814 290491.5128 241001.8033 0.994875325 1.15238864 1.62108612 0.877079232 1.30154013 1.022048553 0.961527739 1.034999647 1.205349955 1 17.87868442 -6.285040617 24.22462292 1.041769044 1.193970138 0.123151151 0.192656105 1168.859529 1199728.076 0.067540555 0.059603073 5.19E-07 6.285040617 0.152201094 EIHPPFKPATGRPEDTFYFDPEFTAKT(ph)PK ddPTM_HeLa_A485_30min_R1 1 EIHPPFKPATGRPEDTFYFDPEFTAKTPK 29 3 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 EIHPPFKPATGRPEDTFYFDPEFT(0.009)AKT(0.991)PK 122.35 6.28E-06 244610000 267480 233460 97382 352530 190660 292170 455020 426830 113580 404340 TRUE FALSE FALSE 326980.0032 260761.1162 133407.6542 371787.8212 171677.221 307467.5694 357801.2598 322149.2733 136374.4642 303545.4793 1.077202678 0.859051226 0.439498076 1.22481752 0.565573308 1.012920931 1.178740203 1.061288325 0.449271933 1 18.21155316 EIHPPFKPATGRPEDTFYFDPEFTAKT(ph)PK ddPTM_HeLa_A486_30min_R1 2 EIHPPFKPATGRPEDTFYFDPEFTAKTPK 29 3 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 EIHPPFKPATGRPEDTFYFDPEFT(0.152)AKT(0.848)PK;EIHPPFKPATGRPEDTFYFDPEFT(0.038)AKT(0.962)PK ; 130.89 1.45E-06 1001540000 1157190 655860 242589 500880 490230 805920 1143510 1045420 459310 1962070 TRUE FALSE FALSE 1076076.957 603887.265 336525.9576 1166073.953 428740.7822 706493.7844 857391.7032 807400.6874 499123.3606 1470754.901 0.731649411 0.410596806 0.228811719 0.792840433 0.291510694 0.480361333 0.58296029 0.548970251 0.339365424 1 20.48812541 -10.49268342 3.260375438 1.011309998 0.486977959 0.439368208 0.172915069 145059264.8 188557845 14894153.27 0.041314927 3.22E-11 10.49268342 -0.524332039 EIHQFNR ddPTM_HeLa_A485_30min_R1 2 EIHQFNR 7 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 107.59 0.011295 159210000 64209 94851 80288 60322 94007 82125 89231 112392 79590 85348 FALSE FALSE TRUE 78492.07053 105942.9994 109989.8723 63617.23812 84647.333 86424.93801 70166.0679 84827.68578 95562.98296 64072.31431 1.225054399 1.653491067 1.71665209 0.99289746 1.321121828 1.348865558 1.095107437 1.323936659 1.491486362 1 15.96741348 -5.252438476 24.97071578 1.242053222 1.543908362 0.344084022 0.192966479 747.7727795 2074500.828 0.051930621 0.088327676 5.59E-06 5.252438476 0.301855141 EIHQFNR ddPTM_HeLa_A486_30min_R1 2 EIHQFNR 7 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 126.28 0.0060538 113827000 59778 68173 63131 21862.9 82038 60416 67669 65507 57407 67230 FALSE FALSE TRUE 55587.87089 62770.7232 87577.01391 50897.93609 71748.02907 52962.48818 50737.50047 50592.48611 62383.08498 50395.17041 1.103039645 1.245570214 1.737805691 1.009976466 1.423708433 1.050943727 1.006792914 1.003915369 1.237878243 1 15.62099786 -6.278530239 23.63247451 1.056831139 1.308536311 0.284545243 0.19344633 535.9289655 741055.2948 0.067359026 0.05958428 5.27E-07 6.278530239 0.251705172 EIIDLVLDR ddPTM_HeLa_A485_30min_R1 5 EIIDLVLDR 9 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VRZ4;F8VS66;P68363 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain 0 0 ;;;; ;;;; 204.36 1.18E-11 162267000 206833 240717 277405 237001 344641 244615 298527 280451 248031 301354 FALSE FALSE TRUE 252842.2873 268866.7592 380028.6533 249947.7645 310327.3319 257422.6632 234744.2677 211669.9525 297808.5466 226231.9938 1.117623918 1.18845595 1.679818344 1.104829429 1.371721686 1.137870284 1.037626305 0.935632264 1.316385634 1 17.78744344 -6.439278483 4.49183741 1.068773241 1.297040351 0.256869078 0.178371739 0.316262228 11.39050272 0.064968504 0.055912598 3.64E-07 6.439278483 0.22826711 EIIDLVLDR ddPTM_HeLa_A486_30min_R1 5 EIIDLVLDR 9 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VRZ4;F8VS66;P68363 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain 0 0 ;;;; ;;;; 141.48 0.00061904 136454500 181606 254373 243250 103952 452580 234997 283585 260319 236065 229792 FALSE FALSE TRUE 168876.3572 234215.5571 337442.9145 242005.5094 395813.1963 206005.4594 212629.0335 201050.0464 256527.3043 172250.5875 0.980410921 1.359737348 1.959023301 1.404961881 2.297891705 1.195963755 1.234416884 1.167195127 1.489268095 1 17.39414938 EIIKQEES(ph)VDPDYWEK ddPTM_HeLa_A485_30min_R1 1 EIIKQEESVDPDYWEK 16 1 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EIIKQEES(1)VDPDYWEK 116.98 5.14E-05 103650000 113560 85784 59606 141620 142470 133190 225090 256560 96467 273120 TRUE FALSE FALSE 138821.0302 95815.69258 81656.73981 149356.342 128285.1866 140163.6224 176997.6827 193638.2577 115827.0421 205036.2104 0.677056165 0.467311078 0.398255214 0.728438853 0.625670882 0.683604238 0.863250849 0.94441005 0.564910178 1 17.64551919 -6.15889981 0.975127493 0.842828122 0.524982899 0.451667327 0.137886725 0.497463062 1.013247607 0.076034605 0.076948959 6.94E-07 6.15889981 -0.317845223 EIIKQEES(ph)VDPDYWEK ddPTM_HeLa_A486_30min_R1 1 EIIKQEESVDPDYWEK 16 1 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EIIKQEES(1)VDPDYWEK 103.27 0.00016336 54702000 132860 113820 60249 91104 137350 162310 241450 208270 100510 255160 TRUE FALSE FALSE 123547.2001 104800.4887 83579.02632 212094.7161 120122.2823 142285.8424 181036.6562 160851.4675 109222.2877 191266.2752 0.645943463 0.547929783 0.43697733 1.108897614 0.628036919 0.743914955 0.946516348 0.840981858 0.571048334 1 17.54522299 -5.23382987 24.91339354 0.819901647 0.54404814 0.404625981 0.160874406 733.8208323 662161.0317 0.042515959 0.073618901 5.84E-06 5.23382987 -0.275853507 EIKEEEEGS(ph)EDDSNVKPDFMVTLK ddPTM_HeLa_A486_30min_R1 1 EIKEEEEGSEDDSNVKPDFMVTLK 24 2 E9PGM7;O94988-6;O94988-5;O94988-1;O94988 E9PGM7 FAM13A Protein FAM13A 1 0 EIKEEEEGS(0.999)EDDS(0.001)NVKPDFMVTLK 156.37 3.72E-10 119440000 98680 79798 35746 89161 67119 133490 188150 154960 72377 232450 TRUE FALSE FALSE 91763.04158 73474.51586 49587.80851 207571.3139 58700.30916 117021.361 141072.88 119678.9908 78650.69664 174243.007 0.526638303 0.42167842 0.284589949 1.191274861 0.336887604 0.671598608 0.809632951 0.686851041 0.451385097 1 17.41074123 -13.99999999 0.055861462 2.298493193 4.73E-07 0.188736159 0.251507043 807.3925438 3.30510172 152.9857824 28.73288363 1.00E-14 13.99999999 -2.298492721 EIKHS(ph)PGPTR ddPTM_HeLa_A485_30min_R1 6 EIKHSPGPTR 10 1 A0A087WY28;H7C1H4;Q96CV9-3;Q96CV9-2;Q96CV9 A0A087WY28 OPTN Optineurin 1 0 EIKHS(1)PGPTR;EIKHS(0.998)PGPT(0.002)R;EIKHS(0.99)PGPT(0.01)R;EIKHS(0.999)PGPT(0.001)R;EIKHS(0.969)PGPT(0.031)R;EIKHS(1)PGPTR ;;;;; 93.228 0.0013359 6492510000 2862847 3212230 2491360 3460490 3688290 3811790 4988260 4847170 2767010 5135030 TRUE FALSE FALSE 3499677.438 3587872.356 3413017.738 3649527.806 3321070.897 4011369.43 3922477.501 3658393.957 3322323.526 3854961.524 0.90783719 0.930715478 0.885357147 0.946709269 0.861505589 1.040573143 1.017514047 0.949009201 0.861830528 1 21.87828503 -6.25034901 24.98828259 0.973331503 0.908841998 0.312283243 0.04991438 1023.614918 2306359.69 0.017229642 0.017074244 5.62E-07 6.25034901 -0.064489505 EIKHS(ph)PGPTR ddPTM_HeLa_A486_30min_R1 6 EIKHSPGPTR 10 1 A0A087WY28;H7C1H4;Q96CV9-3;Q96CV9-2;Q96CV9 A0A087WY28 OPTN Optineurin 1 0 EIKHS(1)PGPTR;EIKHS(0.999)PGPT(0.001)R;EIKHS(0.997)PGPT(0.003)R;EIKHS(1)PGPTR;EIKHS(1)PGPTR;EIKHS(1)PGPTR ;;;;; 94.728 0.001499 1438975000 1197720 1157430 814049 561321 1251250 1213900 1462480 1486810 933714 1669450 TRUE FALSE FALSE 1113766.013 1065711.032 1129270.574 1306783.656 1094306.558 1064141.36 1096552.035 1148295.82 1014649.081 1251408.854 0.890009696 0.851608991 0.90239938 1.044249968 0.874459657 0.850354668 0.876254017 0.917602442 0.81080542 1 20.25512179 EIKLPTEMEGK(ac)K ddPTM_HeLa_A486_30min_R1 2 EIKLPTEMEGKK 12 2 Q9NWX6 Q9NWX6 THG1L Probable tRNA(His) guanylyltransferase 0 1 ; EIKLPTEMEGK(1)K;EIKLPTEMEGK(1)K 146 0.00090078 90804000 130736 148046 86733 92832 187004 198556 258021 260897 128403 307447 FALSE TRUE FALSE 121572.0815 136314.2958 120318.3404 216117.5875 163548.2146 174060.1795 193461.4167 201496.4484 139533.0754 230460.2701 0.527518611 0.591487182 0.522078449 0.937765053 0.709659042 0.755271958 0.839456695 0.874321845 0.605453927 1 17.81415853 -5.246611018 24.96094669 0.80602063 0.551473964 0.568296479 0.10765437 582.5554658 980628.3013 0.027730218 0.047768053 5.67E-06 5.246611018 -0.254546665 EIKSS(ph)QGLK ddPTM_HeLa_A486_30min_R1 1 EIKSSQGLK 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EIKS(0.144)S(0.856)QGLK 59.57 0.0063097 0 283280 232540 115700 132710 252800 282200 357440 339220 182450 438600 TRUE FALSE FALSE 263423.5349 214112.6835 160502.1386 308955.5868 221091.4667 247385.0332 268004.7314 261987.0111 198264.9129 328771.7052 0.801235419 0.651250336 0.488187201 0.939726813 0.672477173 0.752452323 0.815169697 0.796866053 0.603047372 1 18.32672662 -14 0.294730825 3.171043584 0.711201979 0.306300786 0.121678783 324.8056861 3.041769344 435.0608542 0.126758141 1.00E-14 14 -2.459841605 EILIPVFK(ac)NMADAMR ddPTM_HeLa_A485_30min_R1 1 EILIPVFKNMADAMR 15 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 1 EILIPVFK(1)NMADAMR 112.51 0.003241 5207700 3255.1 5160 5776.9 3305.7 5340.2 5488.6 5861.1 6143.9 3730.1 6255.3 FALSE TRUE FALSE 3979.185765 5763.417114 7914.015707 3486.282021 4808.510937 5775.974609 4608.828104 4637.098892 4478.696855 4695.96883 0.847362048 1.22731162 1.685278585 0.742398884 1.023965684 1.229985721 0.981443504 0.987463729 0.953732237 1 12.19720712 -5.29203838 24.99980606 0.999159541 1.250717318 0.235967729 0.217812793 1035.046851 845645.516 0.062644853 0.092928763 5.10E-06 5.29203838 0.251557778 EILS(ph)PLFPR ddPTM_HeLa_A485_30min_R1 1 EILSPLFPR 9 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 0 EILS(1)PLFPR 100.48 0.0018531 14719000 8817.8 9241.6 9721.7 9016.2 14359 10501 11465 12029 9150.5 11422 TRUE FALSE FALSE 10779.28919 10322.32473 13318.16138 9508.732176 12929.36754 11050.81612 9015.40909 9078.868889 10986.92142 8574.705606 1.257103122 1.203810976 1.553191677 1.108928121 1.507849731 1.288769158 1.051395757 1.058796571 1.281317624 1 13.06587143 -6.681896607 5.851195959 1.103384463 1.326689819 0.37384536 0.141090496 0.222881993 12.50152667 0.052651654 0.040217758 2.08E-07 6.681896607 0.223305357 EILS(ph)PVDIIDR ddPTM_HeLa_A485_30min_R1 2 EILSPVDIIDR 11 0 A0A286YF41;A0A286YEZ7;A0A286YES4;O14495 A0A286YF41 PPAP2B Lipid phosphate phosphohydrolase 3 1 0 EILS(1)PVDIIDR;EILS(1)PVDIIDR ; 133.32 3.17E-05 12680800 27042 25158.8 23618 24831 25532 21981.5 28167 24637 25253 35257 TRUE FALSE FALSE 33057.39961 28100.90281 32355.28103 26187.45465 22989.94443 23132.41735 22148.89035 18594.73712 30321.04547 26468.07876 1.2489535 1.061690313 1.222426506 0.98939764 0.868591357 0.873974177 0.83681519 0.702534449 1.145570321 1 14.69196586 -5.462880166 3.470818302 0.88590199 1.165273587 0.512038382 0.117839694 0.185213561 4.405859821 0.033646454 0.050143233 3.44E-06 5.462880166 0.279371597 EILS(ph)PVDIIDR ddPTM_HeLa_A486_30min_R1 4 EILSPVDIIDR 11 0 A0A286YF41;A0A286YEZ7;A0A286YES4;O14495 A0A286YF41 PPAP2B Lipid phosphate phosphohydrolase 3 1 0 EILS(1)PVDIIDR;EILS(1)PVDIIDR;EILS(1)PVDIIDR;EILS(1)PVDIIDR ;;; 108.56 0.00061798 31148500 70857 71840 65299 23074.5 80194 65221 60004.7 61106.5 63487.6 67795 TRUE FALSE FALSE 65890.29021 66147.13676 90584.52157 53718.60212 70135.32074 57174.69614 44990.8894 47193.8839 68990.75629 50818.69073 1.296575911 1.301630086 1.782504041 1.057063875 1.38010877 1.125072199 0.885321695 0.928671778 1.35758626 1 15.63307159 -6.076243236 1.420682161 1.036647566 1.406778438 0.351482229 0.205883482 0.45280576 1.862549 0.088009037 0.092581584 8.39E-07 6.076243236 0.370130872 EILT(ph)TPNRYT(ph)TPSK ddPTM_HeLa_A486_30min_R1 1 EILTTPNRYTTPSK 14 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 2 0 EILT(0.548)T(0.452)PNRY(0.005)T(0.715)T(0.28)PSK 123.41 2.55E-05 274650000 542740 501580 352190 234830 587570 532940 666150 660390 372350 681730 TRUE FALSE FALSE 504696.7287 461832.9741 488567.4 546696.1077 513871.4917 467191.2813 499472.2242 510033.6132 404625.5978 511020.3707 0.98762546 0.903746701 0.956062474 1.069812749 1.005579271 0.914232207 0.977401788 0.998069045 0.791799351 1 18.96302128 EILTT(ph)PNRYT(ph)TPSK ddPTM_HeLa_A485_30min_R1 1 EILTTPNRYTTPSK 14 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 2 0 EILT(0.469)T(0.531)PNRY(0.029)T(0.578)T(0.393)PSK 63.337 0.017061 290950000 177180 212020 160910 191710 280440 216560 302820 364280 192490 325160 TRUE FALSE FALSE 216593.0797 236813.8947 220437.305 202182.6319 252518.4089 227898.7467 238120.0332 274939.7588 231120.9774 244103.5961 0.887299832 0.970136853 0.903048167 0.828265683 1.034472302 0.933614868 0.975487608 1.126324082 0.946815127 1 17.89713402 -6.361491926 1.164613476 1.023137953 0.909622136 0.31868324 0.064942304 0.554015714 1.545495697 0.034897958 0.028708656 4.35E-07 6.361491926 -0.113515817 EIPARQS(ph)R ddPTM_HeLa_A485_30min_R1 1 EIPARQSR 8 1 E9PCH4;Q8TEU7;Q8TEU7-4;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;B7Z7Y1;Q8TEU7-6 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 EIPARQS(1)R 43.958 0.033423 97730000 70191 91275 115650 75642 130540 89530 115410 115800 111090 116910 TRUE FALSE FALSE 85804.74579 101948.8173 158433.7476 79774.13092 117542.9792 94217.65236 90751.71069 87399.86843 133384.744 87766.48857 0.977648157 1.161591616 1.805173594 0.908936112 1.339269477 1.073503724 1.034013234 0.995822778 1.519768492 1 16.42138257 EIPARQS(ph)R ddPTM_HeLa_A486_30min_R1 2 EIPARQSR 8 1 E9PCH4;Q8TEU7;Q8TEU7-4;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;B7Z7Y1;Q8TEU7-6 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 EIPARQS(1)R;EIPARQS(1)R ; 50.284 0.026438 163482000 135281 149379 133229 40025 137545 118171 151379 188386 123212 128618 TRUE FALSE FALSE 125798.5005 137541.664 184818.8368 93180.22275 120292.8235 103592.2635 113502.3731 145494.6202 133892.1154 96411.21564 1.30481189 1.426614768 1.916984819 0.966487375 1.247705703 1.074483532 1.177273539 1.509104716 1.388760783 1 16.55691337 -5.276659976 24.99946464 1.212500616 1.53718497 0.364073831 0.213710274 949.4404485 1559431.156 0.062273487 0.092758564 5.29E-06 5.276659976 0.324684354 EIPAS(ph)PSR ddPTM_HeLa_A485_30min_R1 3 EIPASPSR 8 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 EIPAS(0.875)PS(0.125)R;EIPAS(0.929)PS(0.071)R;EIPAS(0.842)PS(0.158)R ;; 134.84 0.00049272 1775060000 1627420 2053800 2002510 1757360 2457730 1971680 2124790 2113970 1836190 2217860 TRUE FALSE FALSE 1989433.964 2293974.044 2743321.78 1853360.127 2213029.772 2074914.116 1670811.259 1595515.543 2204696.49 1664988.319 1.194863617 1.377771855 1.647652269 1.113137015 1.329156335 1.246203407 1.003497286 0.958274316 1.324151326 1 20.66708062 -6.357189157 1.43713806 1.069460467 1.360940202 0.352738239 0.16231697 0.45771605 1.900029951 0.078561508 0.065759183 4.39E-07 6.357189157 0.291479735 EIPAS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 EIPASPSR 8 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 EIPAS(0.885)PS(0.115)R;EIPAS(0.972)PS(0.028)R;EIPAS(0.982)PS(0.018)R ;; 106.35 0.0013926 1391100000 1857980 2207240 1695180 1633558 2187620 1963220 2156840 2220170 1676260 3244700 TRUE FALSE FALSE 1727745.197 2032330.264 2351599.094 3803005.579 1913228.301 1721017.877 1617175.819 1714685.757 1821559.566 2432206.001 0.710361374 0.835591337 0.96685852 1.563603403 0.786622638 0.707595441 0.664900843 0.704991994 0.748933095 1 21.213834 -5.971248176 24.99997842 0.74129811 1.023869953 0.226818919 0.224404651 304.5916706 264843.9989 0.072874626 0.082630787 1.07E-06 5.971248176 0.282571843 EIPASPS(ph)R ddPTM_HeLa_A485_30min_R1 1 EIPASPSR 8 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 EIPAS(0.393)PS(0.607)R 77.533 0.011056 200190000 272460 325810 325410 271360 428520 316820 332680 345910 314280 384030 TRUE FALSE FALSE 333067.787 363910.6453 445792.7004 286183.7097 385855.0442 333408.2053 261600.2003 261075.0301 377353.1133 288298.3885 1.15528841 1.262270827 1.546289255 0.992664965 1.338387794 1.156469195 0.907393904 0.905572284 1.308897754 1 18.13720325 -6.538755811 6.925972669 1.022980882 1.25935611 0.292526249 0.167332935 0.194387398 42.6290433 0.062677622 0.049564835 2.89E-07 6.538755811 0.236375229 EIPFNEDPNPNTHS(ph)SGPST(ph)PLK ddPTM_HeLa_A485_30min_R1 1 EIPFNEDPNPNTHSSGPSTPLK 22 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 2 0 EIPFNEDPNPNTHS(0.786)S(0.211)GPS(0.034)T(0.969)PLK 125.15 4.30E-06 265540000 246500 210840 167080 286500 276140 181230 268450 213450 233230 352330 TRUE FALSE FALSE 301333.0746 235495.9039 228889.8448 302150.7695 248646.532 190718.9226 211093.4645 161101.0528 280037.1217 264500.6152 1.139252831 0.890341611 0.865366021 1.142344298 0.940060317 0.721052851 0.798083076 0.609076288 1.058739019 1 18.01291155 -6.050677719 7.617302535 0.812131176 0.99676655 0.224379426 0.146950242 0.389409383 52.45770778 0.047030706 0.047460479 8.90E-07 6.050677719 0.184635375 EIPFNEDPNPNTHS(ph)SGPSTPLK ddPTM_HeLa_A485_30min_R1 1 EIPFNEDPNPNTHSSGPSTPLK 22 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 EIPFNEDPNPNT(0.012)HS(0.511)S(0.386)GPS(0.078)T(0.012)PLK 108.44 0.00011713 254730000 212080 262680 211770 260360 363160 270620 366510 390160 234960 331880 TRUE FALSE FALSE 259256.4643 293398.141 290112.5355 274582.8075 327002.5153 284789.2447 288202.1444 294472.6483 282114.3168 249148.4238 1.040570357 1.177603842 1.164416499 1.102085268 1.312480771 1.143050558 1.156748817 1.181916561 1.132314275 1 17.92664592 -9.786352094 6.76732115 1.000000002 1.160937152 0.339210777 0.06542472 9.38E-10 1.36E-10 0.061633287 0.014948268 1.64E-10 9.786352094 0.16093715 EIPFNEDPNPNTHS(ph)SGPSTPLK ddPTM_HeLa_A486_30min_R1 1 EIPFNEDPNPNTHSSGPSTPLK 22 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 EIPFNEDPNPNTHS(0.498)S(0.379)GPS(0.099)T(0.024)PLK 112.39 8.58E-05 394330000 226170 242270 171460 89360 287360 220300 256690 255100 197890 243900 TRUE FALSE FALSE 210316.6509 223071.6429 237853.9039 208034.596 251316.6293 193121.6258 192463.447 197019.2988 215043.2645 182825.8525 1.150366035 1.220131835 1.300986161 1.137883911 1.374623041 1.056314647 1.052714616 1.077633694 1.176219127 1 17.48011056 -6.296574785 24.96944752 1.076187128 1.23394308 0.539547934 0.075794277 480.4007123 341401.7714 0.025634328 0.022608515 5.05E-07 6.296574785 0.157755952 EIPFNEDPNPNTHSS(ph)GPSTPLK ddPTM_HeLa_A485_30min_R1 1 EIPFNEDPNPNTHSSGPSTPLK 22 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 EIPFNEDPNPNTHS(0.144)S(0.57)GPS(0.228)T(0.058)PLK 153.12 6.42E-10 239620000 236340 293750 224690 270220 367200 258950 329740 353210 277370 351710 TRUE FALSE FALSE 288913.0176 328101.5072 307812.1811 284981.4344 330640.2787 272508.2216 259288.3553 266584.6937 333035.6148 264035.1697 1.09422172 1.242643196 1.165799925 1.079331343 1.252258474 1.032090618 0.982022037 1.009656001 1.261330508 1 18.01037059 -6.284753658 24.48886196 1.052935959 1.166141033 0.274334088 0.089187556 834.5785791 876621.4267 0.031137642 0.027479038 5.19E-07 6.284753658 0.113205074 EIPS(ph)AT(ph)QSPISK ddPTM_HeLa_A485_30min_R1 3 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 2 0 EIPS(0.994)AT(0.719)QS(0.287)PISK;EIPS(0.885)AT(0.557)QS(0.557)PIS(0.001)K;EIPS(0.991)AT(0.578)QS(0.43)PISK ;; 97.797 0.0034375 627548000 908118 1004240 833299 1143300 1418830 1179600 1490620 1652850 1035420 1624360 TRUE FALSE FALSE 1110125.716 1121677.132 1141570.977 1205755.584 1277566.303 1241362.032 1172136.86 1247485.946 1243219.297 1219436.946 0.91035926 0.919832006 0.936145965 0.988780591 1.047669014 1.01797968 0.961211536 1.023001599 1.019502731 1 20.21778373 -5.256867415 2.718294294 1.010996633 0.917255244 0.786822025 0.020953037 0.128500155 1.890066342 0.006500511 0.0117215 5.54E-06 5.256867415 -0.093741389 EIPS(ph)ATQS(ph)PISK ddPTM_HeLa_A485_30min_R1 1 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 2 0 EIPS(0.985)AT(0.071)QS(0.943)PIS(0.001)K 102.65 0.00049928 0 525250 538000 573460 668330 854200 720150 852930 967740 633480 918230 TRUE FALSE FALSE 642090.0504 600914.42 785606.7177 704839.1756 769152.8487 757855.9404 670694.5377 730400.2476 760613.6254 689332.1598 0.931466843 0.871734202 1.139663523 1.022495709 1.115794233 1.099406041 0.972962785 1.059576631 1.103406557 1 19.3948398 -4.751560796 24.99994551 1.064648282 0.901600459 0.60917549 0.052082358 127.305284 322167.7282 0.01297865 0.033438657 1.77E-05 4.751560796 -0.163047823 EIPS(ph)ATQS(ph)PISK ddPTM_HeLa_A486_30min_R1 2 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 2 0 EIPS(0.967)AT(0.307)QS(0.724)PIS(0.002)K;EIPS(0.994)AT(0.051)QS(0.954)PISK ; 115.68 0.0005473 696890000 1377220 1535690 1162250 519080 1794760 1473590 1783930 1799910 1239750 1701080 TRUE FALSE FALSE 1280683.99 1413996.332 1612304.326 1208444.473 1569644.465 1291793.448 1337571.846 1390109.785 1347212.528 1275118.496 1.004364688 1.10891367 1.264434899 0.947711508 1.230979294 1.013077179 1.048978467 1.090180865 1.056539084 1 20.28219989 EIPSATQS(ph)PISK ddPTM_HeLa_A485_30min_R1 6 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 EIPSAT(0.012)QS(0.986)PIS(0.002)K;EIPS(0.009)AT(0.223)QS(0.768)PISK;EIPSAT(0.003)QS(0.996)PIS(0.001)K;EIPSAT(0.046)QS(0.954)PISK;EIPSAT(0.082)QS(0.917)PISK;EIPSAT(0.027)QS(0.973)PIS(0.001)K ;;;;; 201.65 4.49E-17 18320070000 6167020 6873330 5523050 7645420 8867150 6959700 9473870 10690630 6220700 10708300 TRUE FALSE FALSE 7538852.323 7677106.153 7566256.028 8063069.935 7984305.412 7324099.13 7449700.28 8068736.23 7469137.43 8038917.882 0.937794419 0.954992484 0.941203299 1.003004391 0.99320649 0.911080227 0.926704364 1.003709249 0.929122245 1 22.93856988 -10.47903336 2.889910692 1.001342272 0.956951529 0.148881947 0.031676409 19525326.38 21201453.61 208703.5359 0.007982556 3.32E-11 10.47903336 -0.044390742 EIPSATQS(ph)PISK ddPTM_HeLa_A486_30min_R1 6 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 EIPSAT(0.013)QS(0.986)PIS(0.001)K;EIPSAT(0.004)QS(0.996)PISK;EIPSAT(0.001)QS(0.994)PIS(0.005)K;EIPSAT(0.002)QS(0.998)PISK;EIPSAT(0.024)QS(0.976)PISK;EIPSAT(0.041)QS(0.959)PISK ;;;;; 209.53 1.92E-17 18210090000 12369160 11936610 7907390 4718880 12266670 11792160 14903790 13969700 9976900 15495460 TRUE FALSE FALSE 11502145.76 10990709.55 10969343.18 10985791.12 10728069.87 10337363.19 11174704.11 10789104.27 10841705.73 11615295.96 0.990258518 0.94622725 0.944387747 0.945803806 0.923615714 0.889978459 0.962067962 0.928870371 0.933399008 1 23.46952258 -10.81116722 2.262865795 1.022706906 0.939258168 0.343706903 0.024605815 6183299.18 3539706.848 766532.6569 0.006597041 1.54E-11 10.81116722 -0.083448738 EIPSATQS(ph)PISKK ddPTM_HeLa_A485_30min_R1 2 EIPSATQSPISKK 13 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 EIPSATQS(0.999)PIS(0.001)KK;EIPSATQS(0.995)PIS(0.005)KK ; 186.75 1.67E-17 580880000 844900 950630 528020 882810 1189360 1216290 1619840 2179900 787940 1400040 TRUE FALSE FALSE 1032845.09 1061797.909 723356.5707 931035.6749 1070943.142 1279973.064 1273747.951 1645276.107 946072.3306 1051035.794 0.982692594 1.010239533 0.688232099 0.885826801 1.018940695 1.217820622 1.211897786 1.56538542 0.900133312 1 20.00338037 -6.075352996 2.707699069 1.217894964 0.886970372 0.345311538 0.182695715 0.281359212 4.054453012 0.063508046 0.065972858 8.41E-07 6.075352996 -0.330924592 EIPSATQS(ph)PISKK ddPTM_HeLa_A486_30min_R1 2 EIPSATQSPISKK 13 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 EIPSATQS(1)PISKK;EIPSATQS(0.999)PIS(0.001)KK ; 183.36 2.22E-17 728280000 1282020 1016980 538730 523550 1141890 1117200 1489550 1418230 764950 1635280 TRUE FALSE FALSE 1192157.018 936390.801 747340.6837 1218850.859 998663.5085 979371.2229 1116848.835 1095329.989 831256.4819 1225795.244 0.972558039 0.763904743 0.609678237 0.994334792 0.814706627 0.798968039 0.911121854 0.893566845 0.678136488 1 20.22528658 -5.279080933 24.99901583 0.862119456 0.780232736 0.097637108 0.120959665 2064.018603 2924818.714 0.033700463 0.050114439 5.26E-06 5.279080933 -0.08188672 EIQNGNLHES(ph)DSESVPR ddPTM_HeLa_A485_30min_R1 3 EIQNGNLHESDSESVPR 17 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 EIQNGNLHES(0.998)DS(0.002)ESVPR;EIQNGNLHES(0.999)DS(0.001)ESVPR;EIQNGNLHES(0.999)DS(0.001)ESVPR ;; 199.6 3.84E-25 7772630000 2773880 2677250 2041510 2648580 2653670 2352920 2608670 3196660 2554040 5496800 TRUE FALSE FALSE 3390920.036 2990331.099 2796749.503 2793265.219 2389461.297 2476115.253 2051306.344 2412674.123 3066612.401 4126548.921 0.821732664 0.724656645 0.677745389 0.676901031 0.579045915 0.60004505 0.497099727 0.584671155 0.743142141 1 21.97650431 -8.085659331 4.665739361 0.999941142 0.642009432 0.61536393 0.084697493 0.336553932 16.50707301 0.090923602 0.023742863 8.21E-09 8.085659331 -0.35793171 EIQNGNLHES(ph)DSESVPR ddPTM_HeLa_A486_30min_R1 4 EIQNGNLHESDSESVPR 17 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 EIQNGNLHES(1)DSESVPR;EIQNGNLHES(0.999)DS(0.001)ESVPR;EIQNGNLHES(1)DSESVPR;EIQNGNLHES(0.979)DS(0.021)ESVPR ;;; 391.64 1.28E-135 6750090000 1639380 2106050 1913510 453090 2631450 1714540 1916960 1870960 1821400 1495540 TRUE FALSE FALSE 1524467.928 1939158.928 2654472.318 1054816.418 2301389.004 1503017.487 1437316.332 1444983.251 1979280.419 1121047.05 1.359860791 1.729774793 2.367850946 0.940920739 2.052892432 1.3407265 1.282119544 1.288958613 1.765564094 1 20.0964154 -6.390298195 24.09848557 1.350173519 1.689328584 0.166795894 0.395792029 20.37567673 3766.969771 0.135223739 0.119256036 4.07E-07 6.390298195 0.339155065 EIQSPLSSICDGS(ph)IALDAEPVTQPASLPR ddPTM_HeLa_A486_30min_R1 1 EIQSPLSSICDGSIALDAEPVTQPASLPR 29 0 Q9H6R7;Q9H6R7-3;Q9H6R7-2 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 EIQS(0.219)PLS(0.249)S(0.249)ICDGS(0.283)IALDAEPVTQPASLPR 52.402 0.022577 34156000 16738 20898 15033 8052.2 18098 20137 27752 29012 20441 24532 TRUE FALSE FALSE 15564.75264 19241.96637 20854.1802 18745.92854 15827.98008 17652.70168 20808.15607 22406.60093 22212.84234 18389.02752 0.846415212 1.046383032 1.13405563 1.019408368 0.860729588 0.959958413 1.131552826 1.218476665 1.207940023 1 14.16655757 -6.830682524 5.290050222 1.161631679 0.984693759 0.393165217 0.097080662 0.212722553 11.01062252 0.0431469 0.029076657 1.48E-07 6.830682524 -0.17693792 EIQTAVR ddPTM_HeLa_A485_30min_R1 3 EIQTAVR 7 0 P58876;Q96A08;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;; ;; 232.51 8.21E-19 1913230000 1149090 1638700 1657900 1208330 1806130 1616810 1751650 2140280 1536860 1652870 FALSE FALSE TRUE 1404701.106 1830331.71 2271226.201 1274338.008 1626305.355 1701463.672 1377395.668 1615372.974 1845293.705 1240839.928 1.132056662 1.475074801 1.830394195 1.026996295 1.310648794 1.371219312 1.110051052 1.301838326 1.487132759 1 20.24288558 -5.283875038 24.99606282 1.246559069 1.478765321 0.22161456 0.212620858 1248.820515 1391335.65 0.059833962 0.088817976 5.20E-06 5.283875038 0.232206252 EIQTAVR ddPTM_HeLa_A486_30min_R1 2 EIQTAVR 7 0 P58876;Q96A08;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ; ; 200.66 3.37E-08 114460000 269170 280100 256010 86874 336520 244140 271460 291880 257500 296190 FALSE FALSE TRUE 250302.573 257903.8559 355143.9282 202247.0624 294310.5237 214020.489 203537.8368 225425.2957 279820.3073 222022.0961 1.127376857 1.161613463 1.599588214 0.910932136 1.325591141 0.963960312 0.916745857 1.015328202 1.260326392 1 17.76034374 -5.893068212 1.485296823 1.035182007 1.251389196 0.172742408 0.188125314 0.677370958 3.096264846 0.073212237 0.089527641 1.28E-06 5.893068212 0.216207189 EIRPVCR ddPTM_HeLa_A485_30min_R1 1 EIRPVCR 7 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A140T9X9;A0A140TA18;F6UJC5;A0A140T996;H0YCC6 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 77.058 0.033566 5694600 2091 3074.2 2963.6 1829.4 3626.4 2970.3 3469.2 4023.5 2867.5 3461.1 FALSE FALSE TRUE 2556.135736 3433.700948 4059.958966 1929.33549 3265.342883 3125.820315 2727.977079 3036.730316 3442.980948 2598.311467 0.983768023 1.321512448 1.562537447 0.74253434 1.256717266 1.203019867 1.049903799 1.168732215 1.325083998 1 11.34335867 -10.3157772 3.54523824 0.999326835 1.180776047 0.061568338 0.209946588 19227295.01 9324817.457 96492.92652 0.049922754 4.83E-11 10.3157772 0.181449212 EIS(ph)DDEAEEEK ddPTM_HeLa_A485_30min_R1 4 EISDDEAEEEK 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EIS(1)DDEAEEEK;EIS(1)DDEAEEEK;EIS(1)DDEAEEEK;EIS(1)DDEAEEEK ;;; 281.24 6.13E-35 10306300000 6395700 6371800 2149000 5865600 2313950 4124100 5466260 4333950 2217890 5549980 TRUE FALSE FALSE 7818401.4 7116926.583 2944004.527 6186022.876 2083565.013 4340031.499 4298348.896 3271041.967 2663000.179 4166472.126 1.87650395 1.708142133 0.706594077 1.484714811 0.500078952 1.041656194 1.031651903 0.785086728 0.639149885 1 21.9903949 -4.699387842 6.045698685 0.90794872 1.819895086 0.653547114 0.260583847 0.113115508 7.875835308 0.064350095 0.172806359 2.00E-05 4.699387842 0.911946366 EIS(ph)DDEAEEEK ddPTM_HeLa_A486_30min_R1 4 EISDDEAEEEK 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EIS(1)DDEAEEEK;EIS(1)DDEAEEEK;EIS(1)DDEAEEEK;EIS(1)DDEAEEEK ;;; 297.18 7.12E-44 10082800000 8508500 6374900 1566560 2042860 2147580 4938400 5608370 4033890 3857050 12710500 TRUE FALSE FALSE 7912098.088 5869729.707 2173173.986 4755881.32 1878210.491 4329150.418 4205096.507 3115461.306 4191382.2 9527708.069 0.830430365 0.616069433 0.228089901 0.499163208 0.197131406 0.454374797 0.441354466 0.326989585 0.439915053 1 23.18369778 -10.02550074 8.32531973 1.000000004 0.437168454 0.472873312 0.174440813 1.44E-08 1.86E-09 0.172775918 0.041904315 9.43E-11 10.02550074 -0.56283155 EIS(ph)DDEAEEEKGEK ddPTM_HeLa_A485_30min_R1 9 EISDDEAEEEKGEK 14 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK ;;;;;;;; 243.09 1.02E-35 17281190000 9734400 7188480 2027850 11150650 3118400 6439490 9092450 7704140 3079810 11598390 TRUE FALSE FALSE 11899783.7 8029110.205 2778036.101 11759781.77 2807921.147 6776651.739 7149773.779 5814687.585 3697899.617 8707124.826 1.366672 0.922131055 0.319053207 1.350592993 0.322485459 0.778288112 0.821140609 0.667807997 0.424698128 1 23.05376498 -4.363196333 3.674330277 0.709709612 1.379957296 0.301962858 0.300970682 0.274475143 5.99645511 0.071338694 0.40407976 4.33E-05 4.363196333 0.670247683 EIS(ph)DDEAEEEKGEK ddPTM_HeLa_A486_30min_R1 6 EISDDEAEEEKGEK 14 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK ;;;;; 251.28 1.24E-35 25094660000 15625460 9993070 2028783 5247280 2860510 10582860 12587650 8882520 6373010 31924800 TRUE FALSE FALSE 14530195.94 9201182.739 2814382.11 12215933.02 2501718.163 9277254.332 9438086.831 6860164.1 6925427.638 23930622.28 0.607180029 0.384494086 0.117605889 0.510472853 0.104540456 0.387672925 0.394393707 0.286668855 0.289396053 1 24.51235458 -10.42665405 3.50138197 1.006502604 0.336268333 0.640431514 0.14773465 206467316.5 296899822.3 13414039.96 0.034853348 3.74E-11 10.42665405 -0.670234271 EIS(ph)GRLAEMPADSGYPAYLGAR ddPTM_HeLa_A486_30min_R1 1 EISGRLAEMPADSGYPAYLGAR 22 1 P38606-2;P38606 P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A 1 0 EIS(0.99)GRLAEMPADS(0.01)GYPAYLGAR 48.115 0.026059 111240000 77754 87192 78126 8868.4 103020 60793 66019 71962 74648 25226 TRUE FALSE FALSE 72303.84612 80282.58837 108378.4795 20646.08338 90098.27098 53292.97776 49500.34792 55577.82352 81118.54874 18909.24541 3.823729851 4.245679119 5.731507374 1.091851258 4.764773477 2.818355604 2.617785473 2.939187806 4.2898882 1 14.20680417 -8.835385373 0.162121292 2.84E-15 4.833280745 0.286654293 1.229444464 16.79149701 1.061222919 20.84212139 8.126716834 1.46E-09 8.835385373 4.833280745 EIS(ph)LPEVS(ph)LLK ddPTM_HeLa_A485_30min_R1 2 EISLPEVSLLK 11 0 Q2M3G0-1;Q2M3G0 Q2M3G0-1 ABCB5 ATP-binding cassette sub-family B member 5 2 0 EIS(1)LPEVS(1)LLK;EIS(1)LPEVS(1)LLK ; 75.566 0.020867 2201710000 1194870 2682210 3005280 167589 1746830 1910930 1009080 1238410 2263280 272405 TRUE FALSE FALSE 1460664.709 2995871.127 4117058.132 176743.9627 1572909.472 2010983.34 793481.8146 934688.0057 2717499.536 204499.4467 7.142634039 14.6497762 20.13236807 0.864275995 7.691509668 9.833685968 3.88011717 4.570613861 13.28854224 1 17.64173741 -5.264864708 24.99997464 6.181756842 14.04241101 0.390241761 4.62823202 310.0789401 2263134.257 1.27752071 1.984711609 5.43E-06 5.264864708 7.860654168 EIS(ph)LPEVS(ph)LLK ddPTM_HeLa_A486_30min_R1 1 EISLPEVSLLK 11 0 Q2M3G0-1;Q2M3G0 Q2M3G0-1 ABCB5 ATP-binding cassette sub-family B member 5 2 0 EIS(1)LPEVS(1)LLK 94.363 0.0045524 981260000 923780 1646600 1918100 0 1598400 728940 326550 644290 1347700 85311 TRUE FALSE FALSE 859027.7924 1516117.419 2660839.688 0 1397913.768 639010.7941 244843.7361 497599.2318 1464519.721 63948.57032 13.43310395 23.70838647 41.6090567 0 21.85996904 9.992573578 3.828760125 7.781240914 22.90152405 1 15.96462449 -5.274173107 24.99757295 10 25.99600397 0.381833622 9.684744022 800.4437535 1571349.03 2.702755315 4.038476424 5.32E-06 5.274173107 15.99600397 EIS(ph)PGSGPGEIR ddPTM_HeLa_A485_30min_R1 2 EISPGSGPGEIR 12 0 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;E9PMV8;Q6R5J7;E9PMG5 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EIS(0.975)PGS(0.025)GPGEIR;EIS(0.583)PGS(0.417)GPGEIR ; 161.23 3.07E-10 2669100000 1316130 1656590 1749180 1197660 1973020 1533380 1676700 1531500 1848820 1558190 TRUE FALSE FALSE 1608898.578 1850313.79 2396274.471 1263085.133 1776579.201 1613665.406 1318459.348 1155897.224 2219861.216 1169761.909 1.37540688 1.581786666 2.048514704 1.079779674 1.518752822 1.379481921 1.127117696 0.988147429 1.897703454 1 20.15778349 -5.279691917 24.9344177 1.291102044 1.659891214 0.252927203 0.302279853 1095.449612 1496468.718 0.083491897 0.12411714 5.25E-06 5.279691917 0.36878917 EIS(ph)PGSGPGEIR ddPTM_HeLa_A486_30min_R1 2 EISPGSGPGEIR 12 0 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;E9PMV8;Q6R5J7;E9PMG5 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EIS(0.954)PGS(0.046)GPGEIR;EIS(0.842)PGS(0.158)GPGEIR ; 276.25 1.05E-40 2714000000 2332060 2778530 2450420 827570 3182400 2542130 2593540 2796550 2446120 2500250 TRUE FALSE FALSE 2168594.637 2558349.164 3399288.249 1926624.783 2783233.717 2228507.847 1944608.86 2159836.613 2658151.651 1874171.126 1.157095319 1.365056332 1.813755532 1.027987656 1.485047805 1.189063163 1.037583406 1.152422307 1.418307866 1 20.83782126 -6.383055711 6.476139656 1.158136183 1.37462142 0.188066821 0.219105134 0.435220216 21.32139352 0.077471643 0.068072596 4.14E-07 6.383055711 0.216485238 EIS(ph)PYENK ddPTM_HeLa_A485_30min_R1 1 EISPYENK 8 0 Q8NG31-4;Q8NG31-2;Q8NG31;H0YCZ2 Q8NG31-4 CASC5 Protein CASC5 1 0 EIS(0.995)PY(0.005)ENK 91.752 0.0036585 155330000 505490 457880 351010 633400 702330 476990 803350 802530 422150 943670 TRUE FALSE FALSE 617934.5066 511425.083 480863.2057 668001.0381 632403.5592 501964.4588 631707.7097 605708.2592 506871.6328 708430.436 0.872258552 0.721912918 0.678772652 0.942931026 0.89268265 0.708558573 0.891700409 0.855000334 0.715485399 1 19.43426667 -11.65646155 2.121588941 5.701649089 0.809690181 0.288082293 0.090155847 2311228.533 152628.6755 53259015.11 0.023774123 2.21E-12 11.65646155 -4.891958908 EIS(ph)PYENK ddPTM_HeLa_A486_30min_R1 1 EISPYENK 8 0 Q8NG31-4;Q8NG31-2;Q8NG31;H0YCZ2 Q8NG31-4 CASC5 Protein CASC5 1 0 EIS(0.998)PY(0.002)ENK 94.66 0.0031583 209030000 503300 447640 248150 205620 481610 530060 731810 744600 347970 638210 TRUE FALSE FALSE 468021.269 412167.3761 344240.3257 478693.7515 421201.983 464666.5865 548703.3977 575070.8345 378132.3198 478398.062 0.978309292 0.86155737 0.719568813 1.000618083 0.880442494 0.971296967 1.146959909 1.202076012 0.790413569 1 18.86785202 -6.474713679 4.101858513 1.053111326 0.884844187 0.231744521 0.123837277 0.297866733 10.51902868 0.046569545 0.039069654 3.35E-07 6.474713679 -0.168267139 EIS(ph)SS(ph)PTSK ddPTM_HeLa_A485_30min_R1 4 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 EIS(0.996)S(0.014)S(0.989)PT(0.001)SK;EIS(0.997)S(0.004)S(0.995)PT(0.004)S(0.001)K;EIS(0.941)S(0.06)S(0.999)PTSK;EIS(0.988)S(0.027)S(0.978)PT(0.006)S(0.001)K ;;; 169.81 1.38E-05 17161490000 36257900 34455500 25086230 53944500 46382100 40065400 58834700 60147500 32667100 70773100 TRUE FALSE FALSE 44323344.77 38484771 34366670.4 56891351.44 41764135.27 42163162.39 46264185.71 45396231.32 39223087.33 53130668.65 0.834232768 0.724341929 0.646833011 1.07078177 0.786064552 0.79357485 0.870762347 0.854426125 0.738238165 1 25.66304153 -14 0.298398428 2.49616947 0.805416354 0.207177569 0.107405979 447.4185166 4.161557278 419.0277378 0.111221006 1.00E-14 14 -1.690753117 EIS(ph)SS(ph)PTSK ddPTM_HeLa_A486_30min_R1 6 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 EIS(0.959)S(0.041)S(0.999)PTSK;EIS(0.923)S(0.078)S(0.969)PT(0.03)SK;EIS(0.958)S(0.042)S(0.999)PTSK;EIS(0.945)S(0.075)S(0.97)PT(0.008)S(0.002)K;EIS(0.952)S(0.053)S(0.983)PT(0.01)S(0.001)K;EIS(0.998)S(0.012)S(0.962)PT(0.024)S(0.005)K ;;;;; 177.57 1.46E-06 22619380000 33425450 32234620 17998180 16285810 29828820 36085040 43930380 41841920 25380940 46586430 TRUE FALSE FALSE 31082498.56 29680231.31 24967557.3 37914188.72 26087411.25 31633234.65 32938534.28 32315428.22 27580980.31 34920884.7 0.890083365 0.849927817 0.714974936 1.085716729 0.747043252 0.905854331 0.943233098 0.925389734 0.789813332 1 25.05758677 -14 0.195875155 1.532613428 0.854149194 0.114040999 0.101910511 311.8322908 3.071878571 65.39541229 0.249511575 1.00E-14 14 -0.678464234 EIS(ph)TPTHWSK ddPTM_HeLa_A485_30min_R1 3 EISTPTHWSK 10 0 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 0 EIS(0.5)T(0.5)PTHWSK;EIS(0.471)T(0.471)PT(0.054)HWS(0.003)K;EIS(0.499)T(0.499)PT(0.002)HWSK ;; 113.61 0.00042086 792277000 1153120 1800640 1616150 827210 1911520 1228720 1622800 1490660 1419530 1351520 TRUE FALSE FALSE 1409627.566 2011209.185 2214031.139 872398.3877 1721202.357 1293053.879 1276075.523 1125073.298 1704416.65 1014610.937 1.389328179 1.982246703 2.182147913 0.859835387 1.696416128 1.274433216 1.257699357 1.108871644 1.679872144 1 19.95249519 -5.254526152 24.99994116 1.29036683 1.864341497 0.424877809 0.310010105 520.2262181 1881262.228 0.081669412 0.137550872 5.57E-06 5.254526152 0.573974667 EIS(ph)TPTHWSK ddPTM_HeLa_A486_30min_R1 5 EISTPTHWSK 10 0 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 0 EIS(0.5)T(0.5)PTHWSK;EIS(0.497)T(0.497)PT(0.005)HWSK;EIS(0.5)T(0.5)PT(0.001)HWSK;EIS(0.904)T(0.095)PTHWSK;EIS(0.5)T(0.5)PTHWSK ;;;; 140.14 1.11E-05 2410730000 3977510 4244670 3277630 189405 4458110 3037000 3377360 3220440 3738800 1617270 TRUE FALSE FALSE 3698707.089 3908306.89 4546816.114 440944.412 3898932.274 2662325.818 2532308.806 2487216.114 4062882.194 1212295.065 3.050995747 3.223890785 3.750585352 0.363726971 3.216157836 2.196103815 2.088855163 2.051659027 3.351397123 1 20.20930945 EISLWFKPEELVDYK ddPTM_HeLa_A485_30min_R1 3 EISLWFKPEELVDYK 15 1 Q32Q12;P22392-2;P22392 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 0 ;; ;; 159.31 4.38E-09 141865000 166377 126470 94174.8 219181 170846 164526 260652 225636 131763 297190 FALSE FALSE TRUE 203386.9897 141259.5664 129013.9775 231154.303 153835.9724 173140.327 204961.5709 170298.4172 158206.6255 223106.0024 0.911615947 0.633150004 0.57826314 1.036073887 0.689519649 0.776045132 0.918673495 0.763307197 0.709109678 1 17.7673698 -11.10159392 2.275081393 1.378496962 0.777714907 0.19724352 0.133388025 28178863.15 8073398.7 55157561.33 0.035494909 7.91E-12 11.10159392 -0.600782055 EISLWFKPEELVDYK ddPTM_HeLa_A486_30min_R1 4 EISLWFKPEELVDYK 15 1 Q32Q12;P22392-2;P22392 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 0 ;;; ;;; 176.83 8.52E-13 168150000 118686 119518 58826.3 68344.5 133561.1 136750 159463 156554 94825.5 192900 FALSE FALSE TRUE 110366.7243 110046.9584 81605.41878 159109.4499 116808.6214 119879.1754 119563.6708 120910.0717 103045.0507 144596.5844 0.763273384 0.761061949 0.564366158 1.100367969 0.807824209 0.829059523 0.826877559 0.836188989 0.712638207 1 17.14167395 EISPGS(ph)GPGEIR ddPTM_HeLa_A485_30min_R1 1 EISPGSGPGEIR 12 0 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;E9PMV8;Q6R5J7;E9PMG5 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EIS(0.149)PGS(0.851)GPGEIR 75.088 0.0092009 727070000 344670 379580 450140 282060 674960 479630 499530 610000 506700 481860 TRUE FALSE FALSE 421340.6524 423968.5791 616665.5179 297468.2236 607758.6125 504742.6852 392801.3347 460396.5436 608390.0423 361741.17 1.164757256 1.172021916 1.704714777 0.822323386 1.680092461 1.39531446 1.085862952 1.272723654 1.68183799 1 18.46459828 -4.581473767 24.99999899 1.335388669 1.166525863 0.048455406 0.286488286 213.7079688 91178.65132 0.069180106 0.183033418 2.62E-05 4.581473767 -0.168862806 EISS(ph)S(ph)PTSK ddPTM_HeLa_A485_30min_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 EIS(0.029)S(0.971)S(0.99)PT(0.008)S(0.001)K 94.465 0.0059063 775330000 720580 735210 576880 995100 984680 889450 1086700 1220500 763100 1415500 TRUE FALSE FALSE 880870.535 821186.414 790291.918 1049459.793 886641.8018 936020.2266 854517.6675 921170.4613 916247.1704 1062641.9 0.828943913 0.772778124 0.743704834 0.987594968 0.834374968 0.880842574 0.804144526 0.866868191 0.862235124 1 20.01922407 -14 0.140245905 1.532850476 0.786818465 0.395306077 0.061331531 151.8602524 1.302260524 22.70209047 0.389953229 1.00E-14 14 -0.74603201 EISS(ph)SPTSK ddPTM_HeLa_A485_30min_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EISS(0.756)S(0.239)PT(0.004)S(0.001)K 146.71 9.17E-05 3150300000 1183000 1221000 1042500 1431300 1494700 1306700 1866300 1852100 1054900 1768800 TRUE FALSE FALSE 1446154.269 1363785.329 1428164.132 1509488.295 1345882.42 1375116.791 1467549.759 1397869.571 1266608.754 1327870.712 1.089077615 1.027046772 1.075529507 1.136773543 1.013564353 1.035580331 1.105190246 1.052715116 0.953864516 1 20.34068326 -7.675175935 5.772544061 0.977763157 1.067463889 0.493228937 0.036684065 0.164541783 8.36042238 0.026466094 0.009462854 2.11E-08 7.675175935 0.089700732 EISSS(ph)PTSK ddPTM_HeLa_A485_30min_R1 5 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EISS(0.023)S(0.948)PT(0.023)S(0.006)K;EISS(0.169)S(0.82)PT(0.011)SK;EISS(0.426)S(0.573)PT(0.001)SK;EISS(0.017)S(0.983)PTSK;EISS(0.018)S(0.982)PTSK ;;;; 184.36 2.83E-08 7908750000 12296400 13185200 10628600 15785400 15592300 14375800 19996100 19879600 11855200 20210600 TRUE FALSE FALSE 15031691.76 14727094.44 14560561.43 16647716.43 14039875.86 15128494.66 15723769.88 15004096.93 14234429.9 15172469.37 0.99072151 0.970645851 0.959669852 1.097231837 0.925352065 0.997101677 1.036335583 0.988902766 0.938174898 1 23.85495257 EISSS(ph)PTSK ddPTM_HeLa_A486_30min_R1 5 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EISS(0.061)S(0.934)PT(0.005)SK;EISSS(1)PTSK;EISS(0.006)S(0.974)PT(0.015)S(0.005)K;EISS(0.061)S(0.938)PTSK;EISS(0.061)S(0.938)PTSK ;;;; 205.52 6.01E-10 10278310000 10333080 10745310 6753170 4916140 10882250 11713950 13762180 13326080 8437310 13725750 TRUE FALSE FALSE 9608784.452 9893812.502 9368178.28 11445022.37 9517296.732 10268801.95 10318737 10292022.49 9168662.824 10288732.86 0.933913299 0.96161623 0.910527896 1.112384054 0.92502127 0.998062841 1.002916214 1.000319731 0.891136251 1 23.29456198 EIST(ph)PTHWSK ddPTM_HeLa_A485_30min_R1 2 EISTPTHWSK 10 0 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 0 EIS(0.278)T(0.722)PT(0.001)HWSK;EIS(0.121)T(0.879)PTHWSK ; 158.01 1.58E-06 1126210000 1711160 2889000 2610300 871880 3304700 2133640 2471840 2557320 2439300 1876480 TRUE FALSE FALSE 2091801.639 3226843.419 3575958.594 919508.5967 2975672.464 2245354.091 1943711.191 1930133.26 2928845.135 1408708.07 1.484907827 2.290640259 2.538466748 0.65273183 2.112341462 1.59391015 1.379782818 1.370144249 2.079100133 1 20.42594124 -8.721431373 0.077280208 4.83E-11 2.775720453 0.144150517 0.5230382 86.98229836 2.521874743 54.05434586 34.53608925 1.90E-09 8.721431373 2.775720453 EIT(ph)ALAPSTMK ddPTM_HeLa_A485_30min_R1 1 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 EIT(1)ALAPSTMK 119.25 0.001019 101540000 98625 119910 90118 186060 165610 154160 200020 187570 137210 214890 TRUE FALSE FALSE 120563.791 133932.4314 123456.3983 196223.9867 149121.2869 162231.5792 157284.093 141568.1634 164746.7884 161321.8778 0.747349291 0.830218649 0.765279949 1.216350748 0.924371133 1.005639046 0.974970631 0.877550927 1.021230293 1 17.29958258 -5.186080058 24.99999592 0.993455843 0.785875491 0.584367515 0.08547989 95.07775225 31540.82469 0.022678953 0.039281096 6.52E-06 5.186080058 -0.207580352 EITALAPS(ph)TMK ddPTM_HeLa_A485_30min_R1 4 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 EITALAPS(0.98)T(0.02)MK;EITALAPS(0.993)T(0.007)MK;EITALAPS(0.991)T(0.009)MK;EIT(0.001)ALAPS(0.861)T(0.139)MK ;;; 212.83 2.08E-15 855290000 1693230 1939410 1521740 2421900 2416070 2274100 3086040 3256380 1813300 3209800 TRUE FALSE FALSE 2069883.172 2166207.129 2084694.951 2554202.264 2175517.587 2393168.36 2426682.343 2457747.699 2177212.677 2409655.932 0.858995321 0.898969475 0.865142165 1.059986295 0.902833288 0.993157707 1.00706591 1.019957939 0.903536745 1 21.20039573 -5.236103111 24.91073244 0.982609524 0.876829015 0.533569748 0.04685665 573.2827836 563653.471 0.012172249 0.021072127 5.81E-06 5.236103111 -0.105780509 EITALAPS(ph)TMK ddPTM_HeLa_A486_30min_R1 5 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 EITALAPS(0.984)T(0.016)MK;EITALAPS(0.993)T(0.007)MK;EITALAPS(0.998)T(0.002)MK;EITALAPS(0.897)T(0.103)MK;EITALAPS(0.95)T(0.05)MK ;;;; 211.77 2.92E-15 613260000 2305730 2279770 1506540 1239360 2424290 2474290 2928980 2825450 2011630 2955410 TRUE FALSE FALSE 2144110.234 2099112.722 2089912.635 2885292.714 2120212.943 2169037.257 2196118.224 2182156.714 2185999.708 2215356.1 0.967839994 0.947528356 0.943375485 1.302405836 0.957052883 0.97909192 0.991316125 0.985013973 0.986748681 1 21.07910719 -9.311213249 14.29053791 0.999996234 1.008438363 0.000134438 0.100410312 0 0 0.099378603 0.024102852 4.88E-10 9.311213249 0.008442129 EITALAPST(ph)MK ddPTM_HeLa_A485_30min_R1 1 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 EITALAPS(0.209)T(0.791)MK 154.47 1.93E-06 108270000 168640 195440 126490 267670 234690 240070 306130 333310 167600 343980 TRUE FALSE FALSE 206153.3862 218295.0079 173283.9147 282292.1343 211323.4396 252639.694 240722.8246 251565.1999 201235.7827 258232.1165 0.798325898 0.845344146 0.671039362 1.093172058 0.818346852 0.978343428 0.93219553 0.974182465 0.779282552 1 17.97830892 -5.249674921 24.9610763 0.93456821 0.778947248 0.403350566 0.093261432 760.8407794 1614300.29 0.023873301 0.040918805 5.63E-06 5.249674921 -0.155620962 EITALAPSTMK ddPTM_HeLa_A485_30min_R1 6 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;;;; ;;;;; 264.9 2.53E-36 2817710000 5782190 6597120 5492770 6062860 8093530 7497740 9068340 10466530 6304710 8167230 FALSE FALSE TRUE 7068418.217 7368595.797 7524774.196 6394058.69 7287709.735 7890310.073 7130815.077 7899597.107 7570007.467 6131289.868 1.152843589 1.201801897 1.227274254 1.042857022 1.188609557 1.286892358 1.163020381 1.288407053 1.234651701 1 22.54775918 EITALAPSTMK ddPTM_HeLa_A486_30min_R1 6 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;;;; ;;;;; 250.06 1.81E-35 2337062000 3910680 4137640 3048428 1785336 6541050 4214820 4848270 4945490 3668301 4210140 FALSE FALSE TRUE 3636561.527 3809758.337 4228860.961 4156352.434 5720610.516 3694838.362 3635181.566 3819509.886 3986272.284 3155893.541 1.152308048 1.207188484 1.339988471 1.317012878 1.812675378 1.170774082 1.151870784 1.210278432 1.263120011 1 21.58961711 -8.040028016 0.692141733 1.01133536 1.332231486 0.204768712 0.18257236 1.377973752 1.51694003 0.195029341 0.077566926 9.12E-09 8.040028016 0.320896127 EITALAPSTMK(ac)IK ddPTM_HeLa_A485_30min_R1 2 EITALAPSTMKIK 13 1 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 1 ; EITALAPSTMK(1)IK;EITALAPSTMK(1)IK 231.92 1.01E-28 124629000 357270 381400 346030 360920 478240 435150 545680 604640 368280 535170 FALSE TRUE FALSE 436743.4789 426001.4123 474040.8965 380636.1457 430624.7464 457933.7811 429091.0102 456351.092 442190.4179 401761.9681 1.08707024 1.060332849 1.179904855 0.947417068 1.071840494 1.139813665 1.06802297 1.135874294 1.100627867 1 18.61598148 -6.032273509 24.45219541 1.097142659 1.06772939 0.014810876 0.064113119 1860.657752 1409735.475 0.020665177 0.020683901 9.28E-07 6.032273509 -0.029413269 EITALAPSTMK(ac)IK ddPTM_HeLa_A486_30min_R1 2 EITALAPSTMKIK 13 1 P60709;P63267-2;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 1 ; EITALAPSTMK(1)IK;EITALAPSTMK(1)IK 209.19 1.26E-14 113394000 373640 442020 317200 152040 488860 437910 482130 460170 374340 486510 FALSE TRUE FALSE 347449.7655 406992.7254 440028.3349 353956.8037 427542.6204 383885.1165 361495.9745 355399.3364 406788.0926 364684.7294 0.9527401 1.116012524 1.206599288 0.970583014 1.172362279 1.052649277 0.991256133 0.974538575 1.115451402 1 18.47629026 -6.521808117 24.14493139 1.018727288 1.088654896 0.116760948 0.08154362 53.1455303 1198648.193 0.030148367 0.023681296 3.01E-07 6.521808117 0.069927608 EIVHLQAGQCGNQIGAK ddPTM_HeLa_A485_30min_R1 2 EIVHLQAGQCGNQIGAK 17 0 P68371;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0QZL7;M0R278;M0R2T4;P04350;M0QYM7;M0R042 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ; ; 268.12 1.15E-54 618010000 798510 768590 731430 892090 1016050 903260 1204420 1199110 801810 1221320 FALSE FALSE TRUE 976135.7947 858469.9147 1002016.394 940822.6178 914888.4944 950553.2969 947085.8278 905026.3924 962725.9124 916867.4007 1.064642274 0.936307599 1.092869474 1.026127243 0.997841666 1.036740205 1.032958339 0.987085364 1.050016514 1 19.80635358 -5.548056176 24.86275202 1.017939961 1.028063552 0.020743046 0.041524284 1444.309122 1426249.828 0.011819395 0.015259608 2.83E-06 5.548056176 0.010123591 EIVHLQAGQCGNQIGAK ddPTM_HeLa_A486_30min_R1 2 EIVHLQAGQCGNQIGAK 17 0 P68371;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0QZL7;M0R278;M0R2T4;P04350;M0QYM7;M0R042 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ; ; 267.22 2.84E-45 390370000 549110 650200 456830 219490 695220 664790 741530 708100 577410 764490 FALSE FALSE TRUE 510620.2246 598675.784 633726.8103 510983.8124 608019.0249 582774.9689 555991.3509 546881.0877 627460.3637 573056.728 0.891046557 1.044705968 1.105870989 0.891681028 1.061010185 1.016958602 0.97022044 0.954322776 1.094935864 1 19.12831844 -4.251770256 23.80306977 1.013099424 0.891046427 0.2635441 0.062306019 946.3521285 2329597.666 0.015120304 0.183731343 5.60E-05 4.251770256 -0.122052997 EIYEISMQLMQILEAK ddPTM_HeLa_A485_30min_R1 1 EIYEISMQLMQILEAK 16 0 A0A2R8YCY2;A0A0C4DFX2;A0A286YFA9;A0A2R8Y5V8;Q5TBA9 A0A2R8YCY2 FRY Protein furry homolog 0 0 40.715 0.033682 19036000 35069 22442 31035 66796 61221 30635 50338 34979 37944 93984 FALSE FALSE TRUE 42869.97806 25066.39668 42516.13797 70444.89634 55125.62228 32239.00123 39582.87508 26400.34541 45559.01276 70555.51845 0.607606308 0.355271951 0.602591249 0.998432127 0.781308443 0.456930966 0.561017422 0.374178321 0.645718631 1 16.10647131 -4.987089417 23.81402809 0.662585232 0.480812056 0.134182645 0.202150164 297.0024627 547816.7745 0.055789321 0.115999841 1.03E-05 4.987089417 -0.181773177 EK(ac)IYSAER ddPTM_HeLa_A486_30min_R1 1 EKIYSAER 8 1 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 1 EK(1)IYSAER 74.165 0.024897 0 12634 13936 13044 5470 16962 15946 16952 16475 14380 14723 FALSE TRUE FALSE 11748.42184 12831.66061 18094.98613 12734.43644 14834.4678 13978.74465 12710.4303 12724.00215 15626.46998 11036.26497 1.064528794 1.162681454 1.639593303 1.153871937 1.344156545 1.266619158 1.151696732 1.152926482 1.415920152 1 13.42996438 -6.637263371 6.56324775 1.193355766 1.282892438 0.059588974 0.173233742 0.745441184 40.04650048 0.066848167 0.051474724 2.31E-07 6.637263371 0.089536672 EK(ac)LNER ddPTM_HeLa_A485_30min_R1 2 EKLNER 6 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; EK(1)LNER;EK(1)LNER 142.64 0.028449 235890000 312570 409880 302630 268110 266300 332050 346490 318770 280180 403990 FALSE TRUE FALSE 382100.1181 457811.9005 414585.4305 282756.1704 239786.237 349435.6246 272459.5809 240591.1577 336409.556 303282.7279 1.259880907 1.509521837 1.366993212 0.932318739 0.790635981 1.152177795 0.898368275 0.793290008 1.109227546 1 18.21030381 -5.24891453 6.726695495 0.943836229 1.394022338 0.710577715 0.124131626 0.077288885 18.60300499 0.03342367 0.055423395 5.64E-06 5.24891453 0.450186109 EKAEGDVAALNRR ddPTM_HeLa_A485_30min_R1 2 EKAEGDVAALNRR 13 2 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YGX3 P67936 TPM4 Tropomyosin alpha-4 chain 0 0 ; ; 114.7 0.00017882 181079000 224412 374280 324330 194901 436930 392790 469900 593780 311510 283624 FALSE FALSE TRUE 274331.6752 418048.7902 444313.1635 205547.9481 393427.715 413355.877 369502.0263 448154.524 374027.1997 212921.7565 1.288415424 1.963391609 2.086743839 0.96536846 1.84775723 1.941351057 1.735388775 2.104785022 1.756641528 1 17.69996385 EKAGS(ph)PAPSNR ddPTM_HeLa_A485_30min_R1 6 EKAGSPAPSNR 11 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 EKAGS(1)PAPSNR;EKAGS(0.998)PAPS(0.002)NR;EKAGS(1)PAPSNR;EKAGS(0.971)PAPS(0.029)NR;EKAGS(0.992)PAPS(0.008)NR;EKAGS(0.999)PAPS(0.001)NR ;;;;; 113.65 0.00020569 1423049000 2236570 2439190 1287350 3166110 1720733 2685520 2838760 3989770 2409710 3850410 TRUE FALSE FALSE 2734087.28 2724432.052 1763594.336 3339066.572 1549410.781 2826129.675 2232235.735 3011272.652 2893316.694 2890573.649 0.945863214 0.942522967 0.61011915 1.155157065 0.536021901 0.977705472 0.772246622 1.041756073 1.000948962 1 21.4629244 -7.272366708 24.20256292 1.016014412 0.847709066 0.165609079 0.170436429 844.5197827 1870482.63 0.085564747 0.041779704 5.34E-08 7.272366708 -0.168305346 EKAGS(ph)PAPSNR ddPTM_HeLa_A486_30min_R1 4 EKAGSPAPSNR 11 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 EKAGS(0.988)PAPS(0.012)NR;EKAGS(0.998)PAPS(0.002)NR;EKAGS(0.979)PAPS(0.021)NR;EKAGS(0.977)PAPS(0.023)NR ;;; 147.36 3.96E-07 662553000 2116910 978004 1754305 777476 1294043 2579610 1660480 1384580 2038480 2487020 TRUE FALSE FALSE 1968525.541 900503.4012 2433618.878 1810003.419 1131732.06 2261363.946 1245010.341 1069341.359 2215177.088 1864254.004 1.055932044 0.48303686 1.30541164 0.970899575 0.607069669 1.213012787 0.667832998 0.573602823 1.188237806 1 20.83016701 EKANGTTVHVGIHPSK ddPTM_HeLa_A485_30min_R1 1 EKANGTTVHVGIHPSK 16 1 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 0 151.8 5.77E-09 14146000 11634 18194 14597 8729.5 23870 16678 25430 33087 23381 25301 FALSE FALSE TRUE 14221.94316 20321.63003 19997.03773 9206.370481 21493.41899 17551.23429 19996.67276 24972.36137 28073.35224 18993.92633 0.748762679 1.069901487 1.052812219 0.484700758 1.131594311 0.92404456 1.052793004 1.314755093 1.478017328 1 14.21325054 -7.055572749 2.580093801 1.298189637 0.906734555 0.377966797 0.206141067 0.292870063 3.826188233 0.11164122 0.059571301 8.80E-08 7.055572749 -0.391455082 EKDDLS(ph)PQPLMTDFER ddPTM_HeLa_A485_30min_R1 1 EKDDLSPQPLMTDFER 16 1 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 EKDDLS(1)PQPLMTDFER 61.222 0.011842 75198000 81926 88207 71805 96407 122850 61008 101180 94516 63762 114670 TRUE FALSE FALSE 100150.1561 98522.04135 98368.65756 101673.4703 110618.6226 64202.28454 79562.06644 71335.8028 76558.44854 86084.87934 1.16338847 1.14447557 1.142693796 1.181083961 1.284994804 0.745802109 0.924228123 0.828668209 0.88933677 1 16.39347223 -6.259435291 24.999985 0.86981262 1.178786844 0.819531537 0.071669375 70.5647533 880262.5195 0.023340086 0.022228742 5.50E-07 6.259435291 0.308974223 EKDECT(ph)PTR ddPTM_HeLa_A485_30min_R1 3 EKDECTPTR 9 1 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 EKDECT(0.5)PT(0.5)R;EKDECT(0.862)PT(0.138)R;EKDECT(0.992)PT(0.008)R ;; 91.858 0.0038655 4402600000 5388440 4714310 2793410 8392400 4930700 4740030 6922390 7229770 4588880 9905400 TRUE FALSE FALSE 6587079.888 5265607.545 3826808.602 8850855.561 4439782.195 4988210.641 5443364.826 5456657.572 5509826.124 7436166.075 0.885816672 0.708107846 0.514621186 1.190244472 0.597052587 0.670804093 0.732012272 0.733799853 0.740949848 1 22.82612756 -9.709467149 7.857692727 1 0.74902539 0.154944013 0.17314921 0 0 0.162255134 0.03935265 1.95E-10 9.709467149 -0.25097461 EKDECT(ph)PTR ddPTM_HeLa_A486_30min_R1 3 EKDECTPTR 9 1 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 EKDECT(0.934)PT(0.066)R;EKDECT(0.907)PT(0.093)R;EKDECT(0.953)PT(0.047)R ;; 87.831 0.0087763 3130770000 3422360 2404460 1944740 1925140 2426280 4923110 4561170 3401260 3386780 5254580 TRUE FALSE FALSE 3182470.237 2213921.833 2697795.41 4481823.211 2121953.338 4315746.743 3419917.023 2626867.347 3680348.817 3938798.966 0.80797986 0.562080434 0.684928435 1.137865438 0.538731059 1.095701197 0.868263918 0.666920899 0.934383514 1 21.90932435 -5.04372898 24.96986053 0.873769613 0.669648294 0.211479863 0.180106188 650.2089134 371277.6184 0.046351384 0.08028934 9.04E-06 5.04372898 -0.204121318 EKDFS(ph)PEALK ddPTM_HeLa_A485_30min_R1 2 EKDFSPEALK 10 1 E5RGU4;E5RJT0;A0A087WZK9;B3KS98;O15372 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 EKDFS(1)PEALK;EKDFS(1)PEALK ; 84.173 0.0024225 559200000 478740 324910 209148 816700 527930 446650 788270 737090 360840 1109290 TRUE FALSE FALSE 585234.0614 362905.3982 286520.5486 861314.253 475367.4355 470035.9033 619849.6749 556317.5218 433257.2782 832764.418 0.702760647 0.435783987 0.344059547 1.034283207 0.570830628 0.564428418 0.744327761 0.668037094 0.520263917 1 19.6675489 -14 0.2937444 3.989471464 0.600565246 0.279326829 0.180358335 351.3525987 3.296258236 645.3661329 0.192810657 1.00E-14 14 -3.388906217 EKDFS(ph)PEALK ddPTM_HeLa_A486_30min_R1 2 EKDFSPEALK 10 1 E5RGU4;E5RJT0;A0A087WZK9;B3KS98;O15372 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 EKDFS(1)PEALK;EKDFS(1)PEALK ; 125.28 5.54E-05 396700000 651860 601820 239500 398660 525930 878150 1011350 967740 531130 1236500 TRUE FALSE FALSE 606167.9802 554129.5914 332240.814 928100.6272 459962.9553 769812.7814 758299.533 747406.7276 577168.776 926872.3517 0.653992946 0.597848874 0.358453689 1.001325183 0.496252752 0.830548867 0.818127255 0.806375038 0.622705786 1 19.82201114 -8.644394474 0.059387501 1.680793901 2.05E-10 0.280467722 0.168876062 91.77045741 2.124201411 34.42617422 24.81714978 2.27E-09 8.644394474 -1.6807939 EKDFS(ph)PEALKK ddPTM_HeLa_A485_30min_R1 2 EKDFSPEALKK 11 2 E5RGU4;E5RJT0;A0A087WZK9;B3KS98;O15372 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 EKDFS(1)PEALKK;EKDFS(1)PEALKK ; 78.069 0.0059519 305410000 465570 247720 144977 760830 441130 436640 851690 760300 278770 1036900 TRUE FALSE FALSE 569134.4403 276688.6991 198610.0253 802392.2164 397209.5483 459501.7952 669719.4738 573835.2329 334716.582 778419.9127 0.731140649 0.355449154 0.255145098 1.030796108 0.510276705 0.590300669 0.860357582 0.73717954 0.429994886 1 19.57018909 -14 0.101562506 2.14962786 0.37130908 0.20146689 0.226084194 297.3706653 2.04419095 73.39185539 3.700188785 1.00E-14 14 -1.77831878 EKDFS(ph)PEALKK ddPTM_HeLa_A486_30min_R1 2 EKDFSPEALKK 11 2 E5RGU4;E5RJT0;A0A087WZK9;B3KS98;O15372 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 EKDFS(1)PEALKK;EKDFS(1)PEALKK ; 61.641 0.018898 401850000 471140 368340 121209 306310 306530 544860 783070 695270 272510 861350 TRUE FALSE FALSE 438115.519 339151.3969 168144.3709 713105.1601 268082.1491 477640.7129 587137.6035 536972.1986 296131.3862 645662.3536 0.678552058 0.52527671 0.260421519 1.104455225 0.415204863 0.739768565 0.909357035 0.831661 0.458647441 1 19.30042039 -5.246116761 24.98637042 0.761386431 0.491802797 0.259612953 0.224267597 1201.460166 1959200.915 0.05925633 0.102134319 5.67E-06 5.246116761 -0.269583635 EKDHSSS(ph)RPS(ph)SPRPQK ddPTM_HeLa_A486_30min_R1 1 EKDHSSSRPSSPRPQK 16 3 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 2 0 EKDHS(0.087)S(0.418)S(0.498)RPS(0.869)S(0.128)PRPQK 80.236 0.0023411 76917000 114250 118250 83955 7212.9 133970 97248 107500 106700 103690 43805 TRUE FALSE FALSE 106241.665 108879.4393 116464.6244 16791.99572 117166.2334 85250.53051 80602.36298 82406.73924 112677.9327 32835.94288 3.235529596 3.315861516 3.546864021 0.511390697 3.568231125 2.596256511 2.454699208 2.509650463 3.431542475 1 15.00298826 -10.87632029 2.715643117 0.185636523 2.76508913 0.278738774 0.865695415 176273141.9 166966545.4 936451928.8 0.228720586 1.33E-11 10.87632029 2.579452607 EKDHSSS(ph)RPSSPRPQK ddPTM_HeLa_A486_30min_R1 1 EKDHSSSRPSSPRPQK 16 3 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 EKDHS(0.001)S(0.079)S(0.306)RPS(0.306)S(0.306)PRPQK 58.693 0.01218 19682000 14276 14583 13782 932.4 18342 9795.5 10408 11740 14174 4539.7 TRUE FALSE FALSE 13275.32612 13427.38997 19118.75949 2170.674321 16041.37533 8587.030803 7803.808315 9067.058282 15402.61373 3402.929572 3.901146304 3.945832462 5.618323592 0.637883998 4.713989811 2.523423016 2.293261777 2.664486024 4.526280491 1 11.73256158 -5.23936625 24.9903671 2.76138036 4.43417373 0.299647864 1.294187466 1082.971633 1226098.273 0.334390783 0.578593292 5.76E-06 5.23936625 1.67279337 EKDHSSSRPS(ph)SPRPQK ddPTM_HeLa_A486_30min_R1 1 EKDHSSSRPSSPRPQK 16 3 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 EKDHS(0.025)S(0.025)S(0.025)RPS(0.463)S(0.463)PRPQK 56.327 0.034567 88815000 412040 378970 292630 40092 500150 276780 308260 326940 378030 149900 TRUE FALSE FALSE 383158.1238 348939.037 405944.1729 93336.20214 437416.5233 242633.6977 231130.0876 252502.8991 410797.9448 112364.0643 3.409970315 3.105432677 3.612758006 0.830658829 3.892850672 2.159353163 2.056975146 2.247185527 3.65595484 1 16.77782119 -9.981822618 0.158972684 9.47E-33 3.382575807 0.231238883 0.920742676 42.34415891 1.439494372 29.80498768 5.365129453 1.04E-10 9.981822618 3.382575807 EKDKEPFTFS(ph)SPASGR ddPTM_HeLa_A485_30min_R1 1 EKDKEPFTFSSPASGR 16 2 Q6P1X5;H0YEX2 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 1 0 EKDKEPFT(0.04)FS(0.735)S(0.224)PASGR 59.163 0.013022 325560000 212500 207030 140500 265680 281020 278750 362960 401280 210610 402980 TRUE FALSE FALSE 259769.8919 231240.3576 192476.7967 280193.4257 253040.6621 293344.919 285410.6309 302865.4508 252877.4952 302524.5023 0.858673892 0.764369021 0.636235397 0.926184238 0.836430306 0.969656728 0.943429801 1.001127011 0.835890955 1 18.20669247 -5.294429913 22.35673902 0.928700158 0.754220458 0.548619669 0.07368264 129.0978317 87485.45029 0.020726908 0.030747902 5.08E-06 5.294429913 -0.1744797 EKDLLPS(ph)PAGPVPSKDPK ddPTM_HeLa_A485_30min_R1 3 EKDLLPSPAGPVPSKDPK 18 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK ;; 137.45 1.38E-06 1687100000 1776930 1116930 675619 2469820 1641870 1869780 3215140 3049420 1305920 3458380 TRUE FALSE FALSE 2172201.948 1247545.248 925558.583 2604740.013 1478399.658 1967678.79 2528199.074 2301544.964 1568006.165 2596269.513 0.836662734 0.480514539 0.356495571 1.003262566 0.569432276 0.757886953 0.973781443 0.886481528 0.603945838 1 21.30800872 -5.797337036 1.044245696 0.845137311 0.584389581 0.194959192 0.197438846 0.851886153 1.98907741 0.09048429 0.132948579 1.59E-06 5.797337036 -0.26074773 EKDLLPS(ph)PAGPVPSKDPK ddPTM_HeLa_A486_30min_R1 5 EKDLLPSPAGPVPSKDPK 18 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(0.998)PAGPVPS(0.002)KDPK ;;;; 185.62 3.21E-18 2790190000 4908020 3893940 1297680 2325445 3414490 5486490 6984180 6216190 3117180 7701330 TRUE FALSE FALSE 4563993.143 3585370.013 1800176.449 5413753.481 2986212.825 4809622.646 5236664.293 4800899.235 3387379.672 5772866.841 0.790593871 0.621072703 0.31183405 0.937792891 0.517284203 0.833142835 0.907116765 0.83163173 0.586775993 1 22.46085652 -6.285492575 23.27502462 0.82592197 0.633690715 0.225871062 0.181264848 530.8562189 513679.0654 0.06290648 0.055519216 5.18E-07 6.285492575 -0.192231255 EKDRQS(ph)PLHGNHITISHTQATGSR ddPTM_HeLa_A485_30min_R1 4 EKDRQSPLHGNHITISHTQATGSR 24 2 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 EKDRQS(1)PLHGNHITISHTQATGSR;EKDRQS(1)PLHGNHITISHTQATGSR;EKDRQS(1)PLHGNHITISHTQATGSR;EKDRQS(1)PLHGNHITISHTQATGSR ;;; 278.8 1.83E-75 4763760000 992358 1231816 915260 748435 1479750 1148742 1532600 1828240 1147648 1350300 TRUE FALSE FALSE 1213104.614 1375866.166 1253852.761 789320.1089 1332420.894 1208888.355 1205147.49 1379861.273 1377970.427 1013695.06 1.196715522 1.357278159 1.236913161 0.778656363 1.314419835 1.192556225 1.188865899 1.361219293 1.359353992 1 19.9511923 -7.041591737 22.25198761 1.271180715 1.179096094 0.014950809 0.174260789 489.0508649 261642.2958 0.083191367 0.048044545 9.09E-08 7.041591737 -0.092084622 EKDRQS(ph)PLHGNHITISHTQATGSR ddPTM_HeLa_A486_30min_R1 3 EKDRQSPLHGNHITISHTQATGSR 24 2 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 EKDRQS(1)PLHGNHITISHTQATGSR;EKDRQS(1)PLHGNHITISHTQATGSR;EKDRQS(1)PLHGNHITISHTQATGSR ;; 227.3 1.35E-38 2664230000 1537849 1139166 936325 117989 1544793 1262679 1384723 1396096 1080621 1057511 TRUE FALSE FALSE 1430053.727 1048894.337 1298895.116 274684.3548 1351030.657 1106902.503 1038250.659 1078235.417 1174290.098 792703.3624 1.80402127 1.323186437 1.638563903 0.346515945 1.704333199 1.396364082 1.309759374 1.360200383 1.481373934 1 19.59642157 -4.012560183 1.6285032 1.280712301 2.295022743 0.158319142 0.362872559 4.041576692 6.217014341 0.098019883 7.825556421 9.71E-05 4.012560183 1.014310443 EKDS(ph)PFKPK ddPTM_HeLa_A485_30min_R1 3 EKDSPFKPK 9 2 Q15291 Q15291 RBBP5 Retinoblastoma-binding protein 5 1 0 EKDS(1)PFKPK;EKDS(1)PFKPK;EKDS(1)PFKPK ;; 103.88 0.0009173 3110220000 2958020 1327330 762560 6973800 2452580 2261200 5156900 3874800 1614420 8974800 TRUE FALSE FALSE 3616021.344 1482549.697 1044662.677 7354761.035 2208392.524 2379592.936 4055086.187 2924499.225 1938419.286 6737547.529 0.53669697 0.22004293 0.15505088 1.091608037 0.327773944 0.353183844 0.601863834 0.434059903 0.287703987 1 22.68379211 -10.90360052 2.484652945 1.318376877 0.447280479 0.304333273 0.251567051 91343243 49720772.83 169903694.8 0.062353745 1.25E-11 10.90360052 -0.871096398 EKDS(ph)PFKPK ddPTM_HeLa_A486_30min_R1 4 EKDSPFKPK 9 2 Q15291 Q15291 RBBP5 Retinoblastoma-binding protein 5 1 0 EKDS(1)PFKPK;EKDS(1)PFKPK;EKDS(1)PFKPK;EKDS(1)PFKPK ;;; 100.93 0.00079402 2908580000 3544870 2793610 779660 3072460 2059290 5135100 7010500 5864900 2372280 8770500 TRUE FALSE FALSE 3296392.919 2572234.169 1081565.232 7152842.154 1800994.646 4501583.572 5256398.75 4529590.3 2577911.14 6574309.714 0.501405176 0.391255399 0.164513885 1.087998963 0.273944296 0.684723381 0.799536222 0.688983406 0.392118907 1 22.64840799 -14 0.066251102 2.450655447 7.43E-17 0.230477429 0.255074757 512.4075948 2.452941277 117.5940141 16.30213991 1.00E-14 14 -2.450655447 EKDS(ph)PHMQDPNQADEEAMTQIIR ddPTM_HeLa_A485_30min_R1 4 EKDSPHMQDPNQADEEAMTQIIR 23 1 P23511-2;P23511 P23511-2 NFYA Nuclear transcription factor Y subunit alpha 1 0 EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR ;;; 265.57 1.02E-61 1205280000 542380 517602 371052 714100 654848 565511 809881 881660 520010 935400 TRUE FALSE FALSE 663030.5598 578131.0514 508319.5756 753109.4748 589649.0338 595120.2815 636843.3082 665431.5026 624371.2372 702221.9948 0.944189394 0.823288156 0.723873048 1.072466372 0.839690352 0.847481688 0.90689741 0.947608459 0.889136543 1 19.42156766 -9.454735735 0.213697297 1.069263385 0.848998027 0.145572848 0.086429391 23.84373596 1.51237217 1.323363247 0.239685136 3.51E-10 9.454735735 -0.220265358 EKDS(ph)PHMQDPNQADEEAMTQIIR ddPTM_HeLa_A486_30min_R1 3 EKDSPHMQDPNQADEEAMTQIIR 23 1 P23511-2;P23511 P23511-2 NFYA Nuclear transcription factor Y subunit alpha 1 0 EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR ;; 304.42 7.20E-90 1111490000 948960 914540 504360 418810 866840 964930 1193960 1206730 718430 1185840 TRUE FALSE FALSE 882442.8044 842068.5197 699661.6992 975010.8455 758112.8442 845886.7473 895218.5796 931983.9217 780704.0909 888897.9455 0.99273804 0.947317433 0.787111392 1.096876025 0.85286826 0.951612895 1.007110641 1.048471229 0.878283154 1 19.76165827 -6.562888928 8.10808546 0.986581457 0.933381151 0.064089037 0.08630626 0.686676237 121.6654515 0.031926699 0.024773901 2.74E-07 6.562888928 -0.053200307 EKEDTDVADGCRET(ph)PTK ddPTM_HeLa_A486_30min_R1 1 EKEDTDVADGCRETPTK 17 2 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 EKEDTDVADGCRET(0.96)PT(0.039)K 61.181 0.0023673 0 54267 76466 37112 45701 69060 91492 110720 108630 54380 115360 TRUE FALSE FALSE 50463.16354 70406.55568 51482.76029 106394.2376 60397.85084 80204.64726 83016.68492 83897.32038 59093.70218 86473.10513 0.58357062 0.814201775 0.595361531 1.230373738 0.698458217 0.92750974 0.960028957 0.97021288 0.683376665 1 16.39996388 -5.183341374 24.99999993 0.915270111 0.679360005 0.362913887 0.157110781 131.3717072 42052.36223 0.040227666 0.069676358 6.56E-06 5.183341374 -0.235910106 EKEEFAVPENSSVQQFK(ac)EEISKR ddPTM_HeLa_A485_30min_R1 1 EKEEFAVPENSSVQQFKEEISKR 23 3 Q9UMX0-4;Q9UMX0-2;Q9UMX0 Q9UMX0-4 UBQLN1 Ubiquilin-1 0 1 EKEEFAVPENSSVQQFK(0.973)EEISK(0.027)R 59.429 0.034023 27037000 40907 23693 25914 79614 82768 40797 81902 77352 43484 113860 FALSE TRUE FALSE 50006.62102 26463.69025 35500.66697 83963.11123 74527.3273 42933.06784 64402.96862 58381.30072 52210.83994 85476.79744 0.585031523 0.309600863 0.415325188 0.982291262 0.871901259 0.50227745 0.753455564 0.683007582 0.61081886 1 16.38324524 -4.609444501 0.112080572 1.093422657 2.32E-37 0.293518792 0.185659805 60.66824598 1.259297358 2.832359381 11.21255168 2.46E-05 4.609444501 -1.093422657 EKEELMER ddPTM_HeLa_A485_30min_R1 1 EKEELMER 8 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;P26038 A0A2R8Y7M3;P26038 RDX;MSN Radixin;Moesin 0 0 74.162 0.017497 226950000 179830 171550 132270 190340 209510 239570 247820 267720 181580 337570 FALSE FALSE TRUE 219832.5631 191611.2802 181202.1772 200737.7922 188650.4488 252113.5148 194871.2325 202061.2502 218021.4404 253420.0115 0.867463314 0.756101616 0.715027105 0.792114999 0.744418121 0.99484454 0.768965447 0.797337389 0.860316591 1 17.95117093 EKEELMER ddPTM_HeLa_A486_30min_R1 1 EKEELMER 8 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;P26038 A0A2R8Y7M3;P26038 RDX;MSN Radixin;Moesin 0 0 81.865 0.009949 190240000 176400 188980 117530 76319 230200 199000 213700 188820 169070 252830 FALSE FALSE TRUE 164035.2709 174004.5365 163040.7636 177674.4889 201326.1695 174449.4033 160229.9997 145829.8079 183725.1237 189519.7224 0.865531402 0.918134189 0.860283888 0.937498677 1.062296667 0.920481526 0.845452904 0.769470354 0.969424825 1 17.53198846 -9.681630966 22.66534763 1 0.904686515 0.126008755 0.0747233 0 0 0.077470161 0.018789274 2.08E-10 9.681630966 -0.095313485 EKEES(ph)PQPR ddPTM_HeLa_A485_30min_R1 8 EKEESPQPR 9 1 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 0 EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR ;;;;;;; 164.48 5.19E-06 11299213000 6988366 6300464 3447432 11723290 5474055 6578024 9801879 11748890 5884690 14137360 TRUE FALSE FALSE 8542903.907 7037248.458 4722780.556 12363703.65 4929038.864 6922439.165 7707627.478 8867456.306 7065693.305 10613176.33 0.804933758 0.663067138 0.444992188 1.164939059 0.464426361 0.65224952 0.726231925 0.835513896 0.665747283 1 23.33935316 -10.81427037 0.393086424 1.252835337 0.700415998 0.165165819 0.192474056 67.68753196 4.618407992 16.0955499 0.123778675 1.53E-11 10.81427037 -0.552419339 EKEES(ph)PQPR ddPTM_HeLa_A486_30min_R1 5 EKEESPQPR 9 1 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 0 EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR;EKEES(1)PQPR ;;;; 122.45 0.00016751 8160452000 7552610 3525086 3358914 4287590 3940300 9950600 7876250 6180040 6385860 10986230 TRUE FALSE FALSE 7023211.041 3245745.347 4659575.456 9981726.203 3446070.832 8722996.142 5905528.944 4772979.801 6939391.486 8235206.5 0.852827557 0.394130414 0.565811611 1.212079649 0.41845591 1.05923223 0.717107573 0.579582285 0.84264936 1 22.9733734 -14 0.115573108 1.803068147 0.600092376 0.095311153 0.249738507 409.5222543 3.098612896 78.65766598 2.675978261 1.00E-14 14 -1.202975771 EKEIS(ph)DDEAEEEK ddPTM_HeLa_A485_30min_R1 4 EKEISDDEAEEEK 13 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK ;;; 248.25 2.84E-34 10023650000 5215190 4278090 1257156 7423890 2094420 4009610 6528660 5606280 1920780 7882620 TRUE FALSE FALSE 6375291.023 4778375.411 1722230.319 7829438.312 1885892.191 4219546.98 5133758.457 4231331.04 2306262.928 5917627.903 1.077338949 0.80748156 0.291033899 1.323070399 0.318690567 0.713047026 0.867536544 0.715038375 0.389727601 1 22.49658755 -4.33801215 4.240739575 0.698854313 1.083481125 0.119797493 0.303173702 0.405163061 12.49937392 0.071655447 0.372980577 4.59E-05 4.33801215 0.384626813 EKEIS(ph)DDEAEEEK ddPTM_HeLa_A486_30min_R1 7 EKEISDDEAEEEK 13 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK ;;;;;; 265.56 1.57E-40 24845580000 12360130 7953190 1981590 5448430 3624040 9112990 11370170 8451250 5349810 28986400 TRUE FALSE FALSE 11493748.71 7322950.259 2748914.717 12684220.39 3169479.11 7988721.948 8525233.205 6527084.864 5813535.838 21728016.77 0.528982872 0.33702801 0.126514755 0.583772579 0.145870612 0.367669173 0.392361314 0.300399477 0.267559433 1 24.37305316 -10.32028259 3.148642215 1.004770701 0.335414427 0.67558036 0.137416418 23264725.56 31101872.32 1045853.983 0.032902117 4.78E-11 10.32028259 -0.669356273 EKEIS(ph)DDEAEEEKGEK ddPTM_HeLa_A485_30min_R1 10 EKEISDDEAEEEKGEK 16 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK ;;;;;;;;; 235.76 1.13E-41 1.37E+11 13691880 8073462 2338117 22007420 4952512 9261130 17906310 14652000 3938194 22969100 TRUE FALSE FALSE 16737591.47 9017583.151 3203083.775 23209629.63 4459422.516 9746028.446 14080480.59 11058574.03 4728553.413 17243326.08 0.970670704 0.522960774 0.185757885 1.346006537 0.258617305 0.565205831 0.816575672 0.64132488 0.274225134 1 24.03953475 -11.03314855 2.531343631 1.461221559 0.620014212 0.102237808 0.337682559 25413647.21 10398984.55 67948356.16 0.081591119 9.27E-12 11.03314855 -0.841207347 EKEIS(ph)DDEAEEEKGEK ddPTM_HeLa_A486_30min_R1 7 EKEISDDEAEEEKGEK 16 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK;EKEIS(1)DDEAEEEKGEK ;;;;;; 217.11 8.11E-34 74431380000 13263220 7130419 1264576 7426856 2484874 9150640 13710680 9359480 4253345 36434620 TRUE FALSE FALSE 12333536.77 6565378.63 1754253.694 17290096.1 2173197.932 8021727.074 10280122.85 7228530.72 4622028.369 27311154 0.451593395 0.240391842 0.064232134 0.633078196 0.079571809 0.293716152 0.376407487 0.264673207 0.169235923 1 24.70298694 -10.81933691 2.671994904 1.235458253 0.284434447 0.634745427 0.162511074 27496041.26 19750873.77 41765604.41 0.041147931 1.52E-11 10.81933691 -0.951023806 EKELS(ph)PPPGLPSK ddPTM_HeLa_A485_30min_R1 3 EKELSPPPGLPSK 13 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 EKELS(1)PPPGLPSK;EKELS(1)PPPGLPSK;EKELS(1)PPPGLPSK ;; 133.16 7.62E-06 3277210000 3725580 2927360 1825210 5537080 4168020 4090660 6158130 6354720 3135060 7736600 TRUE FALSE FALSE 4554322.418 3269689.287 2500431.132 5839556.66 3753037.294 4304840.632 4842395.218 4796214.956 3764237.786 5808008.002 0.784145342 0.562962256 0.430514409 1.005431924 0.646183217 0.741190548 0.833744585 0.825793448 0.648111673 1 22.46961201 -14 0.076973362 1.913010459 0.427975248 0.254478437 0.149529559 369.2509429 2.019105233 58.23734949 5.919045019 1.00E-14 14 -1.485035212 EKELS(ph)PPPGLPSK ddPTM_HeLa_A486_30min_R1 3 EKELSPPPGLPSK 13 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 EKELS(1)PPPGLPSK;EKELS(1)PPPGLPSK;EKELS(1)PPPGLPSK ;; 136.66 4.42E-06 4048400000 7367740 6530840 2676740 3507560 5677860 8075990 9847100 9088140 5207130 10691500 TRUE FALSE FALSE 6851299.473 6013312.453 3713245.414 8165776.942 4965689.855 7079656.464 7383251.428 7018968.915 5658488.221 8014278.81 0.854886589 0.750324838 0.463328704 1.018903527 0.619605329 0.883380356 0.921262113 0.875807927 0.706050832 1 22.93414127 -6.305609094 24.87709393 0.87228591 0.741872388 0.167630819 0.151196853 845.0615806 475949.6005 0.051974112 0.045837052 4.95E-07 6.305609094 -0.130413522 EKEPGEQASVPLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 EKEPGEQASVPLSPK 15 1 P42858 P42858 HTT Huntingtin 1 0 EKEPGEQAS(0.017)VPLS(0.983)PK 71.853 0.0043313 1109200000 853010 583850 386330 1499800 898030 822880 1405600 1235100 616320 2219400 TRUE FALSE FALSE 1042759.132 652126.1787 529249.5435 1581730.276 808618.98 865964.7244 1105282.077 932189.7884 740009.7708 1666144.425 0.625851586 0.39139835 0.31764926 0.949335635 0.485323462 0.519741693 0.663377112 0.559489186 0.444145033 1 20.66808203 -10.21751154 3.398813411 1.000947925 0.55162496 0.399030757 0.165413218 105904536.9 158527543.5 1094268.471 0.042740888 6.06E-11 10.21751154 -0.449322964 EKEPGEQASVPLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EKEPGEQASVPLSPK 15 1 P42858 P42858 HTT Huntingtin 1 0 EKEPGEQASVPLS(1)PK;EKEPGEQAS(0.001)VPLS(0.999)PK ; 94.057 0.00046537 1936580000 950940 855340 319120 712470 720530 1155990 1495120 1285580 666060 2045650 TRUE FALSE FALSE 884284.0167 787559.7433 442691.8103 1658666.166 630154.4087 1013375.707 1121025.162 992881.498 723794.6171 1533405.925 0.576679666 0.513601604 0.288698383 1.081687594 0.410950811 0.660865913 0.731068756 0.647500757 0.472017621 1 20.54830823 -14 0.295207128 4.155182042 0.58142061 0.253475256 0.204011306 370.6310044 3.467901756 722.8650143 0.208075701 1.00E-14 14 -3.573761432 EKEPIVGSTDYGKDEDSAEALLK(ac)K ddPTM_HeLa_A485_30min_R1 1 EKEPIVGSTDYGKDEDSAEALLKK 24 3 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 1 EKEPIVGSTDYGKDEDSAEALLK(1)K 64.954 0.015997 14700000 39320 17898 15488 77586 44478 35221 64133 53250 26477 115150 FALSE TRUE FALSE 48066.59835 19991.01541 21217.65571 81824.32672 40049.61415 37065.1171 50430.46063 40190.35401 31790.69104 86445.22418 0.556035325 0.231256447 0.245446245 0.94654537 0.463294699 0.428769981 0.583380529 0.464922781 0.36775532 1 16.39949864 -11.09467609 2.295150089 1.862221251 0.477230469 0.402277047 0.191478615 55480083.27 15433005.51 249899991.4 0.04938308 8.04E-12 11.09467609 -1.384990781 EKEQFR ddPTM_HeLa_A485_30min_R1 6 EKEQFR 6 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;;; ;;;;; 108.24 0.012208 1083081000 999684 978801 577641 1157531 648524 1168945 1070024 1484747 1019848 1464141 FALSE FALSE TRUE 1222060.257 1093263.263 791334.4435 1220763.988 583954.6735 1230149.153 841404.6311 1120610.47 1224522.139 1099157.594 1.111815324 0.99463741 0.7199463 1.110635994 0.531274748 1.119174502 0.765499538 1.019517562 1.114055114 1 20.06796682 -7.503236572 22.97353082 1.060280567 0.904272744 0.106112274 0.184091131 530.3193834 620272.7243 0.097126759 0.045432171 3.14E-08 7.503236572 -0.156007822 EKEQFR ddPTM_HeLa_A486_30min_R1 2 EKEQFR 6 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 122.78 0.0073784 289950000 223176 149692 164803 101472 362020 340880 199215 177568 256624 257763 FALSE FALSE TRUE 207532.5149 137829.8608 228619.1352 236231.9441 316612.0759 298825.6914 149369.2999 137139.6427 278868.3749 193217.467 1.074087752 0.713340584 1.183221883 1.222622094 1.638630714 1.546577005 0.77306313 0.70976835 1.443287603 1 17.559866 -6.781830092 24.99995184 0.957343889 1.222420846 0.139697428 0.299035813 533.3250337 653874.9398 0.13715481 0.092594348 1.65E-07 6.781830092 0.265076956 EKERAS(ph)LDK ddPTM_HeLa_A485_30min_R1 2 EKERASLDK 9 2 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 EKERAS(1)LDK;EKERAS(1)LDK ; 92.856 0.0021931 547950000 263580 224078 139359 377040 309130 311020 501390 547740 238643 597030 TRUE FALSE FALSE 322212.4617 250281.9729 190913.6933 397636.7405 278351.9318 327304.5263 394263.9305 413405.9062 286536.4611 448201.4085 0.718901047 0.55841407 0.425955139 0.887183157 0.621042073 0.730262155 0.879657946 0.92236637 0.639302902 1 18.77378766 -6.496699465 0.261925905 0.998251124 0.492702425 0.377721799 0.136272936 2.894103871 0.50026648 0.256905483 0.508616364 3.19E-07 6.496699465 -0.505548699 EKEVDGLLTSEPMGS(ph)PVSSK ddPTM_HeLa_A485_30min_R1 11 EKEVDGLLTSEPMGSPVSSK 20 1 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLT(0.005)S(0.024)EPMGS(0.969)PVS(0.001)SK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(0.993)PVS(0.006)S(0.001)K;EKEVDGLLTS(0.003)EPMGS(0.951)PVS(0.022)S(0.025)K;EKEVDGLLTSEPMGS(0.989)PVS(0.009)S(0.002)K;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK ;;;;;;;;;; 169.91 8.28E-14 9855640000 6313572 5009707 3136694 8431267 6945423 6506479 9950728 9626417 5345799 11316754 TRUE FALSE FALSE 7718004.31 5595548.655 4297087.639 8891845.767 6253912.299 6847148.18 7824673.673 7265523.137 6418651.825 8495695.497 0.908460562 0.658633382 0.505795863 1.046629528 0.736127172 0.80595499 0.921016258 0.855200512 0.755518112 1 23.01830063 -5.260831328 24.9999518 0.861651606 0.687730293 0.290427694 0.130274464 73.30334103 3013797.861 0.035538101 0.057133118 5.48E-06 5.260831328 -0.173921313 EKEVDGLLTSEPMGS(ph)PVSSK ddPTM_HeLa_A486_30min_R1 12 EKEVDGLLTSEPMGSPVSSK 20 1 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EKEVDGLLTSEPMGS(0.999)PVSSK;EKEVDGLLTSEPMGS(0.998)PVS(0.001)SK;EKEVDGLLT(0.002)S(0.026)EPMGS(0.906)PVS(0.053)S(0.013)K;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(0.997)PVS(0.002)S(0.001)K;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(0.999)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK;EKEVDGLLTSEPMGS(1)PVSSK ;;;;;;;;;;; 216.02 4.34E-35 13190470000 11355738 10015089 4447295 5142306 9264304 12439561 14555772 14179430 8308623 15933776 TRUE FALSE FALSE 10559759.41 9221456.873 6169406.727 11971548.25 8102288.606 10904894.44 10913763.89 10951083.32 9028821.131 11943854.78 0.884116527 0.772067062 0.51653397 1.002318637 0.678364628 0.91301298 0.913755575 0.916880147 0.755938623 1 23.50976519 -6.285233274 24.43915625 0.895587372 0.769506778 0.195755361 0.130819089 1050.053974 1078526.042 0.045113645 0.039810188 5.19E-07 6.285233274 -0.126080593 EKFPEFCSSPS(ph)PPVEVK ddPTM_HeLa_A485_30min_R1 2 EKFPEFCSSPSPPVEVK 17 1 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 EKFPEFCS(0.001)S(0.002)PS(0.998)PPVEVK;EKFPEFCS(0.001)S(0.05)PS(0.949)PPVEVK ; 144.43 3.79E-08 2435400000 777190 613640 436180 1029510 814100 746340 1234870 1062000 582580 1364880 TRUE FALSE FALSE 950073.2342 685399.86 597541.133 1085749.524 733045.3455 785417.2083 971029.9365 801542.8348 699498.4623 1024640.535 0.927225892 0.668917378 0.583171476 1.059639442 0.715417086 0.766529511 0.947678628 0.782267349 0.682676937 1 19.96668644 -10.63259401 2.643813817 1.022196795 0.791887998 0.168146908 0.138373673 32541845.71 29100565.87 4950194.795 0.034287344 2.33E-11 10.63259401 -0.230308797 EKFPEFCSSPS(ph)PPVEVK ddPTM_HeLa_A486_30min_R1 2 EKFPEFCSSPSPPVEVK 17 1 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 EKFPEFCS(0.001)S(0.013)PS(0.986)PPVEVK;EKFPEFCS(0.001)S(0.03)PS(0.969)PPVEVK ; 132.1 5.32E-06 2680000000 796580 777270 348630 376420 675580 894370 1121020 1025930 618380 1176590 TRUE FALSE FALSE 740743.8555 715676.2944 483628.8726 876324.7832 590842.4569 784031.7227 840528.9391 792348.1349 671981.6763 881964.2057 0.839879726 0.811457302 0.548354309 0.993605837 0.669916594 0.888960932 0.953019333 0.898390354 0.761914908 1 19.75036058 -6.412103519 9.872332543 0.898556548 0.774701697 0.216870957 0.121516061 0.667800368 55.27733287 0.041512738 0.03658429 3.87E-07 6.412103519 -0.123854851 EKFS(ph)FEPK ddPTM_HeLa_A485_30min_R1 2 EKFSFEPK 8 1 P23443-3;P23443-5;P23443-2;P23443;K7ERJ3;P23443-4 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 EKFS(1)FEPK;EKFS(1)FEPK ; 85.288 0.0024921 804060000 2772200 1915840 1008400 4213000 2476800 2211700 3895100 3386800 1377040 4878600 TRUE FALSE FALSE 3388866.326 2139880.822 1381449.123 4443145.522 2230201.095 2327501.192 3062880.065 2556181.99 1653399.297 3662454.804 0.925299152 0.584275011 0.377192128 1.213160506 0.608936141 0.635503048 0.836291566 0.697942262 0.451445652 1 21.80437953 EKFS(ph)FEPK ddPTM_HeLa_A486_30min_R1 2 EKFSFEPK 8 1 P23443-3;P23443-5;P23443-2;P23443;K7ERJ3;P23443-4 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 EKFS(1)FEPK;EKFS(1)FEPK ; 100.38 0.0010551 1168750000 2719100 2551800 904960 1717160 2165300 3503100 4370600 3728700 1807910 5303500 TRUE FALSE FALSE 2528505.131 2349586.075 1255384.748 3997635.26 1893707.883 3070923.139 3277029.653 2879756.407 1964621.094 3975469.08 0.636026864 0.591021091 0.315782798 1.00557574 0.476348286 0.772468123 0.8243127 0.724381538 0.494185983 1 21.92269367 -5.251067022 24.98959363 0.737055329 0.521951366 0.263214505 0.183715738 1062.976122 2560969.465 0.048060061 0.082116238 5.61E-06 5.251067022 -0.215103963 EKFVESQVESESSVLNDSPFPEDDS(ph)EGLHSDSR ddPTM_HeLa_A485_30min_R1 1 EKFVESQVESESSVLNDSPFPEDDSEGLHSDSR 33 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 EKFVESQVESESSVLNDSPFPEDDS(0.498)EGLHS(0.498)DS(0.003)R 121.92 6.25E-06 40666000 20462 28362 16553 18235 23433 29583 32671 47182 23535 32158 TRUE FALSE FALSE 25013.70131 31678.68918 22676.64353 19231.13188 21099.92824 31131.92014 25690.57395 35610.54052 28258.25862 24141.60242 1.036124316 1.312203251 0.939318075 0.796597158 0.874006947 1.289554835 1.064161919 1.475069463 1.170521249 1 14.55923382 -6.269817398 24.95682744 1.221072115 0.995714872 0.258187236 0.174554501 875.7697008 2608774.916 0.064162957 0.057519421 5.37E-07 6.269817398 -0.225357243 EKFVESQVESESSVLNDSPFPEDDSEGLHS(ph)DSR ddPTM_HeLa_A486_30min_R1 1 EKFVESQVESESSVLNDSPFPEDDSEGLHSDSR 33 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 EKFVESQVESESSVLNDSPFPEDDS(0.049)EGLHS(0.475)DS(0.475)R 63.77 0.0040685 36197000 18903 16737 12611 6370.6 19397 18410 22918 21227 17617 23598 TRUE FALSE FALSE 17577.99732 15410.69916 17494.31693 14831.07875 16964.04739 16138.76138 17183.674 16394.07548 19144.05574 17688.9072 0.993729975 0.871206965 0.988999305 0.838439514 0.959021787 0.912366219 0.971437851 0.92679979 1.082263337 1 14.1105573 -7.749299564 24.99951687 1.041131663 0.930915847 0.422878142 0.050609256 165.5429588 340907.1525 0.031793738 0.011815717 1.78E-08 7.749299564 -0.110215816 EKGGRS(ph)PDEVTLTSIVPTR ddPTM_HeLa_A485_30min_R1 1 EKGGRSPDEVTLTSIVPTR 19 2 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 EKGGRS(0.999)PDEVTLTSIVPTR 110.68 3.81E-05 256410000 72933 82548 51779 87747 93931 106820 132280 145560 64197 122410 TRUE FALSE FALSE 89156.69423 92201.27053 70934.2068 92540.39642 84578.89983 112412.93 104017.2974 109861.1818 77080.74905 91895.43979 0.970197155 1.00332803 0.771901271 1.007018375 0.920381904 1.22326995 1.13190924 1.195501997 0.838787531 1 16.48770565 -6.228491835 24.45016867 1.093488607 0.933373733 0.26332708 0.118428919 623.0197424 462338.9125 0.038486022 0.038483301 5.91E-07 6.228491835 -0.160114874 EKGGRS(ph)PDEVTLTSIVPTR ddPTM_HeLa_A486_30min_R1 1 EKGGRSPDEVTLTSIVPTR 19 2 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 EKGGRS(0.999)PDEVTLTSIVPTR 88.168 0.00048727 232810000 92788 92090 60615 46684 109420 98266 96895 91218 76495 127200 TRUE FALSE FALSE 86284.04036 84792.45301 84086.75133 108682.7113 95695.5233 86142.94002 72650.84615 70449.65267 83125.64819 95348.29207 0.904935353 0.889291787 0.881890483 1.139849586 1.003641714 0.903455512 0.761952255 0.738866435 0.871810563 1 16.54091948 -6.543920515 5.829263212 0.821924597 0.964212721 0.247487852 0.09646086 0.215900833 23.96047961 0.038349368 0.030272357 2.86E-07 6.543920515 0.142288124 EKGPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_HeLa_A485_30min_R1 3 EKGPTTGEGALDLSDVHSPPKSPEGK 26 2 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 0 EKGPTTGEGALDLS(0.007)DVHS(0.993)PPKS(1)PEGK;EKGPTTGEGALDLS(0.024)DVHS(0.976)PPKS(1)PEGK;EKGPTTGEGALDLSDVHS(1)PPKS(1)PEGK ;; 141.23 8.15E-08 3249730000 1566970 954770 490006 3603790 1537420 1324390 3170590 2477610 968220 5087570 TRUE FALSE FALSE 1915537.071 1066422.046 671279.6103 3800655.922 1384349.067 1393733.013 2493167.545 1869972.263 1162532.873 3819332.429 0.501537142 0.27921687 0.175758362 0.995110008 0.362458386 0.364915345 0.652775738 0.489607097 0.30438117 1 21.86488906 -10.59659363 2.61072325 1.047614844 0.461680058 0.353583886 0.219642648 18297335.64 16645717.63 5974812.423 0.05737985 2.53E-11 10.59659363 -0.585934786 EKGPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_HeLa_A486_30min_R1 4 EKGPTTGEGALDLSDVHSPPKSPEGK 26 2 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 0 EKGPTTGEGALDLSDVHS(1)PPKS(1)PEGK;EKGPTTGEGALDLS(0.041)DVHS(0.959)PPKS(1)PEGK;EKGPTTGEGALDLSDVHS(1)PPKS(1)PEGK;EKGPTTGEGALDLSDVHS(1)PPKS(1)PEGK ;;; 166.56 6.09E-14 4984650000 2374860 1764130 462060 1621080 1252320 2743060 4203240 3369870 1471190 6255900 TRUE FALSE FALSE 2208394.578 1624333.914 640982.0064 3773956.165 1095242.348 2404649.147 3151544.895 2602624.165 1598713.934 4689381.921 0.470935107 0.346385503 0.136687951 0.804787545 0.233557933 0.512785946 0.672059761 0.555003668 0.3409221 1 22.16096635 -14 0.184529531 3.250087674 0.350313563 0.432433591 0.188777325 127.7755102 1.239323427 105.6701206 0.545965361 1.00E-14 14 -2.899774111 EKGPTTGEGALDLSDVHS(ph)PPKSPEGK ddPTM_HeLa_A485_30min_R1 2 EKGPTTGEGALDLSDVHSPPKSPEGK 26 2 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 1 0 EKGPTTGEGALDLSDVHS(0.992)PPKS(0.008)PEGK;EKGPTTGEGALDLSDVHS(0.996)PPKS(0.004)PEGK ; 153.63 1.17E-09 508000000 569550 387740 173469 985040 541330 546680 1017620 931680 374820 1395410 TRUE FALSE FALSE 696244.4326 433082.8201 237642.4017 1038850.241 487433.2845 575303.3195 800197.1738 703184.0192 450042.9359 1047559.968 0.66463444 0.413420552 0.226853268 0.991685701 0.465303467 0.54918414 0.763867653 0.671258965 0.429610667 1 19.9986014 -14 0.202120217 2.894070279 0.512349454 0.273701537 0.203510808 192.7763841 1.910921151 148.1178501 0.478630165 1.00E-14 14 -2.381720826 EKGPTTGEGALDLSDVHS(ph)PPKSPEGK ddPTM_HeLa_A486_30min_R1 4 EKGPTTGEGALDLSDVHSPPKSPEGK 26 2 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 1 0 EKGPTTGEGALDLSDVHS(0.849)PPKS(0.151)PEGK;EKGPTTGEGALDLSDVHS(0.698)PPKS(0.302)PEGK;EKGPTTGEGALDLSDVHS(0.853)PPKS(0.147)PEGK;EKGPTTGEGALDLSDVHS(0.655)PPKS(0.345)PEGK ;;; 137.36 9.22E-07 2159960000 1727100 1231530 397573 792574 990011 1843250 2687720 2198940 1036204 3327750 TRUE FALSE FALSE 1606039.209 1133939.078 551523.913 1845152.326 865834.5889 1615848.556 2015224.028 1698289.365 1126022.997 2494459.74 0.643842505 0.454583034 0.221099545 0.739700183 0.347103052 0.647774959 0.807879957 0.680824524 0.451409569 1 21.25029595 -6.460704687 7.060179516 0.71126419 0.48051936 0.296135642 0.184612939 0.356887617 34.85220308 0.063958719 0.055917889 3.46E-07 6.460704687 -0.23074483 EKGS(ph)PGQNDQELK ddPTM_HeLa_A485_30min_R1 1 EKGSPGQNDQELK 13 1 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 EKGS(1)PGQNDQELK 137.61 3.55E-06 589290000 801440 563640 357090 1307800 866750 828240 1466200 1310000 620040 1904900 TRUE FALSE FALSE 979717.5631 629552.795 489192.4508 1379241.802 780453.3267 871605.3657 1152934.392 988720.446 744476.3407 1430043.487 0.685096343 0.440233322 0.34208222 0.964475427 0.54575496 0.609495707 0.806223309 0.691391874 0.520596994 1 20.44762759 -14 0.147009233 2.276498184 0.50645355 0.30384361 0.17011611 172.8318663 1.521589567 64.9765004 0.927171941 1.00E-14 14 -1.770044634 EKGS(ph)PGQNDQELK ddPTM_HeLa_A486_30min_R1 1 EKGSPGQNDQELK 13 1 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 EKGS(1)PGQNDQELK 128.79 1.16E-05 471680000 1020800 910560 338900 724020 773310 1158200 1643900 1375900 742920 1839300 TRUE FALSE FALSE 949247.1914 838403.9094 470131.1561 1685555.15 676314.249 1015313.06 1232578.833 1062637.606 807316.9038 1378727.308 0.688495242 0.608099879 0.340989225 1.222544255 0.49053518 0.736413251 0.893997548 0.770738056 0.585552269 1 20.39490571 -14 0.069399377 1.883061059 0.380201362 0.13258797 0.226238664 670.614874 3.346978759 97.99104716 12.39734743 1.00E-14 14 -1.502859697 EKGSFS(ph)DTGLGDGK ddPTM_HeLa_A485_30min_R1 2 EKGSFSDTGLGDGK 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EKGS(0.261)FS(0.73)DT(0.009)GLGDGK;EKGS(0.097)FS(0.902)DT(0.001)GLGDGK ; 129.46 1.05E-05 246360000 560280 439570 306579 813960 638150 597400 938950 1008260 482230 1223180 TRUE FALSE FALSE 684912.3531 490973.8877 419995.3299 858424.5737 574613.5453 628678.9402 738335.662 760982.6541 579009.1377 918263.737 0.745877601 0.534676333 0.45737985 0.934834448 0.625760903 0.684638753 0.804056212 0.828719053 0.630547755 1 19.80854905 -14 0.094625721 1.983238674 0.463838025 0.349415344 0.131387255 221.2693675 1.43851995 43.39105019 2.662210795 1.00E-14 14 -1.519400649 EKGSFS(ph)DTGLGDGK ddPTM_HeLa_A486_30min_R1 2 EKGSFSDTGLGDGK 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EKGS(0.004)FS(0.993)DT(0.004)GLGDGK;EKGS(0.046)FS(0.954)DTGLGDGK ; 157.51 6.93E-09 849760000 1336580 1310690 517950 716570 1120810 1640010 2139600 1892760 982600 2444100 TRUE FALSE FALSE 1242892.644 1206826.151 718514.1112 1668211.173 980227.5587 1437682.241 1604249.45 1461819.867 1067772.559 1832081.452 0.678404687 0.658718612 0.392184589 0.910555135 0.535034923 0.784726159 0.875643082 0.797901133 0.582819371 1 20.80505221 -6.090015855 1.07877268 0.803337413 0.615092928 0.207616206 0.158024649 0.859644071 2.118062569 0.077873831 0.083115414 8.13E-07 6.090015855 -0.188244485 EKIETELR ddPTM_HeLa_A486_30min_R1 1 EKIETELR 8 1 E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;B0AZS6 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 91.867 0.0046713 95890000 142360 146910 112860 59032 210890 145750 178440 171830 143750 178130 FALSE FALSE TRUE 132381.2991 135268.3166 156562.4145 137429.4793 184438.2097 127768.8469 133792.4247 132708.06 156210.3657 133525.0886 0.991433899 1.013055434 1.172531815 1.029240877 1.381300037 0.956890186 1.002002141 0.993881086 1.169895242 1 17.02675132 EKINIR ddPTM_HeLa_A485_30min_R1 2 EKINIR 6 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 97.071 0.015639 84801000 73632 116526 89455 75008 107119 113142 128898 148419 91401 108528 FALSE FALSE TRUE 90011.18437 130152.7021 122548.127 79105.49711 96453.85624 119065.9402 101357.8893 112019.0075 109744.3423 81473.96691 1.104784605 1.597475942 1.504138459 0.970929735 1.183861053 1.461398588 1.244052464 1.374905529 1.346986608 1 16.31405153 -11.06274619 2.296919437 0.561290655 1.314775319 0.208882027 0.180664272 10542573.54 2725870.948 24289215.51 0.046950261 8.65E-12 11.06274619 0.753484664 EKKADRDQS(ph)PFSK ddPTM_HeLa_A485_30min_R1 1 EKKADRDQSPFSK 13 3 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 EKKADRDQS(0.999)PFS(0.001)K 105.39 0.0024728 427690000 242490 490080 150040 147010 525530 927100 1425800 3465800 305040 316800 TRUE FALSE FALSE 296431.0639 547390.5929 205546.0397 155040.7841 473206.388 975641.5224 1121166.182 2615807.116 366258.73 237827.5903 1.246411586 2.301627798 0.864264905 0.651904112 1.989703497 4.102305882 4.714197293 10.99875382 1.540017832 1 17.85955657 -6.353803522 2.319316372 5.346722902 1.310606625 0.241889572 2.595908835 0.358289079 3.779818968 1.006622966 0.873854128 4.43E-07 6.353803522 -4.036116277 EKKEESHSNDQS(ph)PQIR ddPTM_HeLa_A485_30min_R1 1 EKKEESHSNDQSPQIR 16 2 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 EKKEESHSNDQS(1)PQIR 176.46 3.97E-13 122500000 63598 73167 57020 96331 130930 97922 155450 214730 86588 137290 TRUE FALSE FALSE 77745.15569 81723.24418 78114.0708 101593.3186 117894.1495 103049.0445 122236.8376 162067.1308 103965.4174 103066.1296 0.754323035 0.792920472 0.757902437 0.985710038 1.143868989 0.999834231 1.186003957 1.572457716 1.008725347 1 16.65321078 -5.605693305 1.01590073 1.211640819 0.735354071 0.525113675 0.160294716 0.416652226 0.896867693 0.069647601 0.130137837 2.48E-06 5.605693305 -0.476286748 EKKEESHSNDQS(ph)PQIR ddPTM_HeLa_A486_30min_R1 3 EKKEESHSNDQSPQIR 16 2 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 EKKEESHSNDQS(1)PQIR;EKKEESHSNDQS(1)PQIR;EKKEESHS(0.002)NDQS(0.998)PQIR ;; 128.72 8.06E-06 240877000 171784 156438 110091 107723 225407 182674 255039 270212 132810 240856 TRUE FALSE FALSE 159742.8287 144041.2831 152721.1835 250784.588 197134.3522 160137.5392 191225.5447 208690.6263 144322.0777 180544.0899 0.884785699 0.79781777 0.845894117 1.389049003 1.091890365 0.886971926 1.059162583 1.155898409 0.799373039 1 17.46199167 -5.054228714 24.99999241 1.060611685 0.836438157 0.295554634 0.149609585 359.4643752 165716.1735 0.040931492 0.070895965 8.83E-06 5.054228714 -0.224173528 EKKPGDGEVS(ph)PSTEDAPFQHSPLGK ddPTM_HeLa_A485_30min_R1 1 EKKPGDGEVSPSTEDAPFQHSPLGK 25 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 EKKPGDGEVS(0.987)PS(0.013)TEDAPFQHSPLGK 123.24 3.32E-06 236710000 310770 217730 124240 527340 289790 333060 518350 533880 204790 654380 TRUE FALSE FALSE 379899.7144 243191.6295 170201.5461 556147.2489 260937.4901 350498.5066 407600.288 402945.0929 245889.4746 491255.109 0.773324709 0.495041426 0.346462648 1.132094585 0.531164939 0.713475545 0.829712059 0.820235934 0.500533165 1 18.90611289 -14 0.124138089 1.954529239 0.55127336 0.150649047 0.215508599 288.3457637 2.291657774 70.09581338 1.87866197 1.00E-14 14 -1.403255879 EKKPGDGEVS(ph)PSTEDAPFQHSPLGK ddPTM_HeLa_A486_30min_R1 1 EKKPGDGEVSPSTEDAPFQHSPLGK 25 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 EKKPGDGEVS(0.994)PS(0.006)TEDAPFQHSPLGK 148.66 1.43E-09 166300000 401230 323860 111480 195440 270870 433620 588140 491900 240190 712700 TRUE FALSE FALSE 373105.849 298196.1541 154648.0415 454994.197 236894.9588 380124.3731 440981.1513 379905.1081 261009.8626 534235.2811 0.698392379 0.558173832 0.289475531 0.851673809 0.443428143 0.711529894 0.825443708 0.711119467 0.488567251 1 19.02711573 -6.431593098 8.397550411 0.737306726 0.568255961 0.195795321 0.181661217 0.606442733 50.92591175 0.062615239 0.055111438 3.70E-07 6.431593098 -0.169050765 EKKPGDGEVSPSTEDAPFQHS(ph)PLGK ddPTM_HeLa_A486_30min_R1 1 EKKPGDGEVSPSTEDAPFQHSPLGK 25 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 EKKPGDGEVS(0.008)PS(0.008)T(0.008)EDAPFQHS(0.977)PLGK 41.89 0.03085 43651000 55224 45760 14413 23041 40242 65626 73902 70110 30419 82796 TRUE FALSE FALSE 51353.08278 42133.81094 19994.09959 53640.61243 35194.47312 57529.73136 55410.93794 54147.48349 33055.74341 62063.34269 0.827430179 0.67888401 0.322156344 0.864288163 0.567073438 0.926951867 0.892812658 0.872455159 0.532613004 1 15.92145378 -6.260160037 24.99951206 0.839985368 0.646934717 0.222680678 0.180053147 187.8542669 3670870.517 0.060788724 0.057604566 5.49E-07 6.260160037 -0.193050651 EKLCYVALDFEQEMATAASS(ph)SSLEK ddPTM_HeLa_A485_30min_R1 2 EKLCYVALDFEQEMATAASSSSLEK 25 1 P60709;A0A2R8Y793;Q6S8J3;A0A2R8YEA7;P63261;I3L4N8 P60709;P63261 ACTB;POTEE;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 EKLCYVALDFEQEMATAAS(0.033)S(0.776)S(0.158)S(0.033)LEK;EKLCYVALDFEQEMATAAS(0.007)S(0.989)S(0.004)S(0.001)LEK ; 169.65 2.49E-14 67008000 65640 49288 39609 74340 69257 66419 106139 112077 55256 112404 TRUE FALSE FALSE 80241.39154 55051.80285 54262.01737 78401.00596 62361.5299 69896.59614 83461.53557 84589.94002 66345.37236 84383.75144 0.950910456 0.652398144 0.643038695 0.929100741 0.739022962 0.828318189 0.989071168 1.002443463 0.786233975 1 16.36467761 -6.603133926 4.796010752 0.94361545 0.776490636 0.322914785 0.110461253 0.250511889 10.44237283 0.043180888 0.033139342 2.49E-07 6.603133926 -0.167124814 EKLCYVALDFEQEMATAASSSSLEK ddPTM_HeLa_A485_30min_R1 2 EKLCYVALDFEQEMATAASSSSLEK 25 1 P60709;A0A2R8Y793;Q6S8J3;A0A2R8YEA7;P63261;I3L4N8 P60709;P63261 ACTB;POTEE;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ; ; 162.77 1.17E-13 121829000 136893 127764 96029 155238 171601 173046 244126 271822 144931 234890 FALSE FALSE TRUE 167344.3756 142704.8884 131554.1232 163718.2589 154515.8019 182106.421 191966.4858 205157.2283 174017.3223 176336.2458 0.949007249 0.809277116 0.746041306 0.9284436 0.876256615 1.03272257 1.088638838 1.163443326 0.986849422 1 17.42796952 -6.245003491 2.062941893 1.074938973 0.84647895 0.647986638 0.070734202 0.192889118 1.612546302 0.02815087 0.02616278 5.69E-07 6.245003491 -0.228460023 EKLQEEGGGS(ph)DEEETGSPS(ph)EDGMQSAR ddPTM_HeLa_A485_30min_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 2 0 EKLQEEGGGS(1)DEEETGS(0.016)PS(0.984)EDGMQSAR 146.03 6.06E-09 849150000 386990 350760 290700 473410 478030 437510 624440 654200 352670 631480 TRUE FALSE FALSE 473074.5904 391778.3308 398242.027 499271.1896 430435.6547 460417.3471 491023.2928 493756.4243 423447.6341 474063.6575 0.997913641 0.826425575 0.840060234 1.053173306 0.907970159 0.971214181 1.035775017 1.041540343 0.89322948 1 18.85472127 -5.25284709 24.99110251 0.986050299 0.881962392 0.315679513 0.065930976 731.77102 2128388.015 0.017761416 0.030168171 5.59E-06 5.25284709 -0.104087907 EKLQEEGGGS(ph)DEEETGSPSEDGMQSAR ddPTM_HeLa_A485_30min_R1 2 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 1 0 EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR ; 260.94 2.06E-63 9862200000 1350100 1484460 980670 1620430 1847080 1471710 2344190 2396210 1336020 2141880 TRUE FALSE FALSE 1650425.087 1658054.684 1343460.642 1708949.988 1663178.23 1548766.46 1843334.656 1808535.74 1604146.959 1607948.734 1.026416485 1.03116141 0.835512111 1.062813727 1.034347796 0.96319393 1.146388947 1.12474714 0.997635637 1 20.61678998 -6.165675941 1.285622616 1.068181475 0.98097923 0.125597904 0.076691601 0.796915843 2.696306899 0.036519688 0.035762818 6.83E-07 6.165675941 -0.087202245 EKLQEEGGGS(ph)DEEETGSPSEDGMQSAR ddPTM_HeLa_A486_30min_R1 4 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 1 0 EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR ;;; 304.71 7.20E-93 10202500000 2735430 2723314 1602080 1399970 2805998 2936327 3442516 3212866 2120561 3760220 TRUE FALSE FALSE 2543690.483 2507508.681 2222448.281 3259200.911 2454043.566 2574072.829 2581162.086 2481366.548 2304372.935 2818636.437 0.902454268 0.889617635 0.788483485 1.156304115 0.870649202 0.913233362 0.915748499 0.88034289 0.817548835 1 21.42656597 -9.565905278 14.01791905 0.999999997 0.906397825 0.087094501 0.093080179 0 0 0.088941611 0.021571509 2.72E-10 9.565905278 -0.093602172 EKLQEEMLQR ddPTM_HeLa_A485_30min_R1 3 EKLQEEMLQR 10 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;; ;; 92.866 0.0019178 300650000 637790 765660 594820 679480 831910 828930 1075420 1192470 671420 914100 FALSE FALSE TRUE 779664.1852 855197.2766 814868.6705 716598.2719 749082.1194 872331.493 845647.7316 900014.8628 806167.8354 686231.6928 1.136152984 1.246222356 1.187454149 1.044251205 1.091587764 1.271190914 1.232306436 1.311532056 1.174774998 1 19.38833623 -6.261882816 24.99987043 1.21957823 1.14416295 0.061659685 0.093061395 86.24920837 4862472.64 0.031741772 0.029726973 5.47E-07 6.261882816 -0.07541528 EKLQEEMLQR ddPTM_HeLa_A486_30min_R1 2 EKLQEEMLQR 10 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ; ; 107.11 0.00060573 297660000 453430 437890 280127 165868 473570 416510 484800 472240 341490 531570 FALSE FALSE TRUE 421646.8985 403190.0016 388599.6765 386149.0865 414170.4347 365125.231 363497.9123 364721.2609 371090.6282 398461.4121 1.058187533 1.01186712 0.975250463 0.969100331 1.039424201 0.916337743 0.912253737 0.915323918 0.931308822 1 18.60408049 -6.2710348 24.78437359 0.928328141 1.00653927 0.541404663 0.03446015 463.4994281 1197186.558 0.012072149 0.010789073 5.36E-07 6.2710348 0.078211129 EKLQSFDS(ph)PER ddPTM_HeLa_A485_30min_R1 5 EKLQSFDSPER 11 1 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 0 EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER ;;;; 174.21 8.82E-09 5665950000 3513470 4068740 3173350 3832590 4829850 4591470 5771620 6380260 3623050 4921590 TRUE FALSE FALSE 4295029.28 4544543.75 4347304.219 4041954.687 4348973.175 4831872.269 4538466.237 4815491.231 4350162.902 3694728.188 1.162475035 1.2300076 1.176623556 1.093978902 1.177075269 1.30777476 1.228362685 1.303341135 1.177397275 1 21.8170368 -2.512948919 9.549027279 1.196893581 1.196303597 0 0.087999691 0 0 0.019803096 0 0.003069383 2.512948919 -0.000589984 EKLQSFDS(ph)PER ddPTM_HeLa_A486_30min_R1 7 EKLQSFDSPER 11 1 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 0 EKLQSFDS(1)PER;EKLQS(0.004)FDS(0.996)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER ;;;;;; 190.82 3.63E-11 5742790000 6489630 6363740 4048890 2362680 6637830 6166570 7357450 7362030 5050340 7593790 TRUE FALSE FALSE 6034740.449 5859454.066 5616728.641 5500438.443 5805251.466 5405801.29 5516538.191 5685856.481 5488107.538 5692255.557 1.060166816 1.02937298 0.986731637 0.96630209 1.019850815 0.949676492 0.96913045 0.998875828 0.96413583 1 22.440569 -4.608036774 2.356228275 0.980365517 1.059787131 0.639087042 0.01960585 0.198171848 2.000589416 0.005164026 0.023791814 2.47E-05 4.608036774 0.079421615 EKNT(ph)SSETTMEEELGLVGATADDTEAELIR ddPTM_HeLa_A485_30min_R1 1 EKNTSSETTMEEELGLVGATADDTEAELIR 30 1 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 EKNT(0.2)S(0.2)S(0.2)ET(0.2)T(0.2)MEEELGLVGATADDTEAELIR 57.184 0.024392 47755000 21746 18372 15245 27328 28099 22406 33861 35626 22794 36993 TRUE FALSE FALSE 26583.32268 20520.44558 20884.7599 28820.85944 25301.3649 23579.14351 26626.32073 26888.66764 27368.54672 27771.32591 0.957221948 0.738907665 0.752026027 1.037791985 0.911060746 0.849046372 0.958770237 0.96821692 0.985496581 1 14.76130844 -6.131953446 0.454634545 0.999820242 0.814205467 0.275874937 0.083259077 1.714429732 0.728452052 0.082405499 0.135176956 7.38E-07 6.131953446 -0.185614774 EKNT(ph)SSETTMEEELGLVGATADDTEAELIR ddPTM_HeLa_A486_30min_R1 1 EKNTSSETTMEEELGLVGATADDTEAELIR 30 1 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 EKNT(0.346)S(0.346)S(0.103)ET(0.103)T(0.103)MEEELGLVGATADDTEAELIR 121.18 2.59E-05 20593000 19832 22472 14610 14413 19427 23694 31170 28599 15888 26178 TRUE FALSE FALSE 18441.87921 20691.23688 20267.38327 33554.19239 16990.28451 20770.87518 23370.93632 22087.63201 17265.18463 19622.85841 0.939816148 1.054445609 1.032845615 1.709954365 0.865841467 1.058504054 1.191005705 1.125607266 0.879850645 1 14.26024759 -7.748583741 23.38339882 0.939925398 1.128221988 0.100535263 0.217559106 214.2878003 389783.751 0.150076706 0.055762574 1.78E-08 7.748583741 0.18829659 EKNTSS(ph)ETTMEEELGLVGATADDTEAELIR ddPTM_HeLa_A485_30min_R1 1 EKNTSSETTMEEELGLVGATADDTEAELIR 30 1 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 EKNT(0.296)S(0.296)S(0.367)ET(0.02)T(0.02)MEEELGLVGATADDTEAELIR 82.317 0.00066805 44755000 29068 32217 28553 38155 47035 34133 54964 54015 31192 53338 TRUE FALSE FALSE 35534.07632 35984.4979 39115.94289 40239.31104 42352.03025 35920.1511 43220.49239 40767.73656 37451.94829 40041.81821 0.887424146 0.898672925 0.976877291 1.004932164 1.057694983 0.897065935 1.079383862 1.018129006 0.935320871 1 15.28921986 -4.806101955 3.016628546 1.000887016 0.887867459 0.413112956 0.049801157 0.231190739 4.213316933 0.013146353 0.036195829 1.56E-05 4.806101955 -0.113019557 EKNTSS(ph)ETTMEEELGLVGATADDTEAELIR ddPTM_HeLa_A486_30min_R1 1 EKNTSSETTMEEELGLVGATADDTEAELIR 30 1 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 EKNT(0.174)S(0.174)S(0.217)ET(0.217)T(0.217)MEEELGLVGATADDTEAELIR 107.63 7.63E-05 74688000 18581 21927 13381 11946 22073 24939 27723 27804 17565 32106 TRUE FALSE FALSE 17278.56785 20189.42466 18562.48156 27810.89172 19304.39852 21862.27974 20786.41218 21473.63616 19087.54834 24066.44863 0.717952537 0.838903362 0.771301235 1.155587688 0.802129089 0.908413206 0.863709162 0.892264434 0.793118613 1 14.55473565 EKPCVS(ph)PTVGEK ddPTM_HeLa_A486_30min_R1 2 EKPCVSPTVGEK 12 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 EKPCVS(0.936)PT(0.064)VGEK;EKPCVS(0.959)PT(0.041)VGEK ; 103.01 0.00036427 466700000 938860 920720 399680 517740 881460 1109600 1369180 1281460 714150 1440070 TRUE FALSE FALSE 873050.7623 847758.794 554446.7998 1205324.885 770899.0675 972708.8336 1026596.682 989699.5321 776053.097 1079467.099 0.808779409 0.785349359 0.513630106 1.116592517 0.714147813 0.901100955 0.951021744 0.91684085 0.718922418 1 20.04188784 -5.256440401 24.99996718 0.893291259 0.710862619 0.314152998 0.134808064 550.0141817 2750620.969 0.035710777 0.059462091 5.54E-06 5.256440401 -0.18242864 EKPDS(ph)DDDLDIASLVTAK ddPTM_HeLa_A485_30min_R1 8 EKPDSDDDLDIASLVTAK 18 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK ;;;;;;; 274.3 2.41E-69 2994660000 2285648 1563352 990412 4081757 2578454 2130650 4187914 3671023 1734953 5615128 TRUE FALSE FALSE 2794082.512 1746172.417 1356806.613 4304733.049 2321734.066 2242207.539 3293131.962 2770698.853 2083142.153 4215379.928 0.66283053 0.414238443 0.32187054 1.021196932 0.550776942 0.531911139 0.781218305 0.657283306 0.494176608 1 22.00723124 -14 0.213459898 2.878263154 0.553321828 0.279416116 0.187643114 204.0885546 2.038105731 164.9765321 0.394802163 1.00E-14 14 -2.324941327 EKPDS(ph)DDDLDIASLVTAK ddPTM_HeLa_A486_30min_R1 9 EKPDSDDDLDIASLVTAK 18 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK ;;;;;;;; 254.75 5.64E-58 2568056000 1601757 1390350 579939 1366658 1301251 1869954 2604784 2249871 1112543 3034316 TRUE FALSE FALSE 1489482.106 1280173.602 804506.9121 3181648.891 1138035.966 1639258.088 1953039.493 1737624.488 1208979.123 2274503.524 0.65486032 0.5628365 0.353706602 1.398832254 0.50034478 0.720710287 0.858666286 0.763957703 0.531535392 1 21.11712024 -13.99999786 0.035761125 2.097183969 1.46E-07 0.081072186 0.272004779 3079.389072 8.236610945 409.5966949 139.4971883 1.00E-14 13.99999786 -2.097183823 EKPELSEPSHLNGPS(ph)S(ph)DPEAAFLSR ddPTM_HeLa_A486_30min_R1 1 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 EKPELSEPSHLNGPS(0.978)S(0.98)DPEAAFLS(0.042)R 78.043 0.0079571 139460000 118440 115350 70003 29900 118920 112460 126430 131550 103720 120720 TRUE FALSE FALSE 110137.9676 106209.2459 97110.03635 69608.71106 104003.9447 98585.82861 94795.87676 101598.9367 112710.5331 90490.92624 1.217116148 1.173700506 1.073146672 0.769234154 1.149330093 1.089455404 1.047573284 1.122752755 1.245545137 1 16.46548552 -7.403035677 5.719430416 1.141676599 1.070043239 0.024516044 0.126872488 0.803069051 34.03256843 0.074812419 0.034840635 3.95E-08 7.403035677 -0.071633361 EKPELSEPSHLNGPS(ph)SDPEAAFLSR ddPTM_HeLa_A485_30min_R1 1 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EKPELSEPSHLNGPS(0.5)S(0.5)DPEAAFLSR 214.74 5.45E-30 2113300000 357810 338900 334770 369170 465660 371870 492030 452080 338820 514310 TRUE FALSE FALSE 437403.6001 378531.407 458615.3539 389336.8223 419297.2554 391340.5382 386903.771 341206.6712 406818.0662 386101.9822 1.132870641 0.980392291 1.187808857 1.008378201 1.085975402 1.013567804 1.002076624 0.883721625 1.053654436 1 18.55862244 -6.482730637 1.89872465 0.973514296 1.077595303 0.303649778 0.067391161 0.40082344 2.890476287 0.028499447 0.022299493 3.29E-07 6.482730637 0.104081007 EKPELSEPSHLNGPS(ph)SDPEAAFLSR ddPTM_HeLa_A486_30min_R1 3 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EKPELSEPSHLNGPS(0.849)S(0.151)DPEAAFLSR;EKPELSEPSHLNGPS(0.631)S(0.369)DPEAAFLSR;EKPELSEPS(0.002)HLNGPS(0.499)S(0.499)DPEAAFLSR ;; 222.47 1.86E-38 4155500000 1203199 1225965 745628 118328.5 1183236 1072256 1254441 1262863 1110827 1058894 TRUE FALSE FALSE 1118860.963 1128815.069 1034355.13 275474.728 1034823.508 939971.9566 940566.5937 975336.663 1207114.379 793740.0502 1.409606285 1.422147047 1.303140909 0.347059126 1.303730998 1.184231483 1.184980641 1.228786002 1.520793084 1 19.59830708 -7.306154481 3.369960849 1.288422373 1.153282702 0.012295026 0.311989161 1.189820813 27.49292235 0.198604607 0.089431618 4.94E-08 7.306154481 -0.135139671 EKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_HeLa_A485_30min_R1 6 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EKPELSEPSHLNGPS(0.184)S(0.816)DPEAAFLSR;EKPELSEPSHLNGPS(0.365)S(0.635)DPEAAFLSR;EKPELSEPSHLNGPS(0.187)S(0.813)DPEAAFLSR;EKPELSEPSHLNGPS(0.157)S(0.843)DPEAAFLSR;EKPELSEPSHLNGPS(0.018)S(0.982)DPEAAFLSR;EKPELSEPSHLNGPS(0.202)S(0.798)DPEAAFLSR ;;;;; 286.29 4.78E-76 14442430000 5001040 5619350 5025480 5153650 6826030 5391290 6713980 6608200 5617450 7271230 TRUE FALSE FALSE 6113504.095 6276484.101 6884614.18 5435180.85 6146406.486 5673569.608 5279483.325 4987528.589 6744820.689 5458646.178 1.119967094 1.149824315 1.261231074 0.995701255 1.125994667 1.039373028 0.967178152 0.913693327 1.23562152 1 22.38011176 -5.273569328 24.89436837 1.036621874 1.17428918 0.326217985 0.090362472 809.3402129 1661011.404 0.025263982 0.037781685 5.33E-06 5.273569328 0.137667306 EKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_HeLa_A486_30min_R1 5 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EKPELSEPSHLNGPS(0.159)S(0.841)DPEAAFLSR;EKPELSEPSHLNGPS(0.137)S(0.863)DPEAAFLSR;EKPELSEPSHLNGPS(0.21)S(0.79)DPEAAFLSR;EKPELSEPSHLNGPS(0.203)S(0.797)DPEAAFLSR;EKPELSEPSHLNGPS(0.044)S(0.956)DPEAAFLSR ;;;; 300.15 6.25E-90 22439180000 5941770 6257320 4078415 787608 5978860 5534790 6293670 6170880 5382180 5228100 TRUE FALSE FALSE 5525282.606 5761467.174 5657686.512 1833591.228 5228935.628 4851963.883 4718927.198 4765905.333 5848711.696 3918949.731 1.409888615 1.470155927 1.443674173 0.467878221 1.334269635 1.238077602 1.204130576 1.216118006 1.492418147 1 21.90203564 -5.086986695 24.31771139 1.144724346 1.444583264 0.229338307 0.255946236 87.4559433 24446.1019 0.07004924 0.12132893 8.18E-06 5.086986695 0.299858918 EKPGPEDKLHEQCRPWR ddPTM_HeLa_A485_30min_R1 1 EKPGPEDKLHEQCRPWR 17 3 P15328 P15328 FOLR1 Folate receptor alpha 0 0 98.573 0.00017627 384570000 488900 437070 246940 477160 281230 518130 713000 664970 372550 1159900 FALSE FALSE TRUE 597654.1183 488181.5345 338293.382 503226.0426 253229.7537 545258.4856 560661.7253 501885.0649 447317.3678 870758.2764 0.686360537 0.560639557 0.388504354 0.577917036 0.290815213 0.626188117 0.643877573 0.576377025 0.513710153 1 19.73191275 -11.67918579 0.378032301 1.863989822 0.521209556 0.595085073 0.113580175 56.59328877 2.200748537 39.74699811 0.080438954 2.09E-12 11.67918579 -1.342780266 EKPHAGVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 EKPHAGVSPR 10 1 A0A0C4DH79;A0A087WWP8;Q5VWQ0-4;Q5VWQ0 A0A0C4DH79 RSBN1 Round spermatid basic protein 1 1 0 EKPHAGVS(1)PR 95.264 0.0014495 134950000 202180 240730 198000 208250 283140 262830 295020 338590 235210 289130 TRUE FALSE FALSE 247154.2435 268881.2794 271248.4395 219626.1702 254949.5874 276591.3724 231986.5669 255550.2716 282414.4895 217055.212 1.138669932 1.238769053 1.24967485 1.01184472 1.174584038 1.274290397 1.068790584 1.177351464 1.301118213 1 17.72770254 -10.19547778 3.902154638 0.999882901 1.179428966 0.285367638 0.086184171 19627225.97 23305379.89 25021.16768 0.021514572 6.38E-11 10.19547778 0.179546065 EKPHAGVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EKPHAGVSPR 10 1 A0A0C4DH79;A0A087WWP8;Q5VWQ0-4;Q5VWQ0 A0A0C4DH79 RSBN1 Round spermatid basic protein 1 1 0 EKPHAGVS(1)PR;EKPHAGVS(1)PR ; 112.62 0.00030242 1538910000 1855670 1839950 1267840 722220 1986870 1742440 2007100 2041210 1528300 2135110 TRUE FALSE FALSE 1725597.116 1694145.661 1758781.602 1681364.659 1737658.238 1527475.469 1504902.351 1576471.042 1660774.275 1600464.559 1.078185147 1.058533694 1.098919431 1.050547886 1.08572116 0.95439506 0.940290957 0.985008405 1.037682631 1 20.6100593 -6.256482747 24.97240123 0.979839407 1.073540168 0.731481508 0.027492548 223.0011212 1123519.546 0.009607074 0.009313267 5.54E-07 6.256482747 0.093700761 EKPLFTRDAS(ph)QLKGT(ph)FLS(ph)TTLK ddPTM_HeLa_A485_30min_R1 1 EKPLFTRDASQLKGTFLSTTLK 22 3 A0A1B0GUV4;A0A1B0GUF0;A0A1B0GUI9;A0A0D9SGF2;A0A0D9SET0;A0A1B0GTH8;A0A1B0GVS6;A0A0D9SFP3;A0A0D9SGF8;A0A0D9SEY4;A0A1B0GTC0;E7EWI0;A0A0E3D6M1;A0A0D9SGI1;Q86UL8-2;Q86UL8 A0A1B0GUV4 MAGI2 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2" 3 0 EKPLFT(0.197)RDAS(0.687)QLKGT(0.687)FLS(0.687)T(0.687)T(0.055)LK 43.12 0.035776 32632000 6516.5 2867.5 1408.2 7055.3 5383.5 5537.4 7957.4 5374.4 3862.4 8035.1 TRUE FALSE FALSE 7966.072943 3202.829181 1929.15178 7440.713174 4847.499837 5827.329702 6257.236484 4056.319973 4637.548252 6032.097445 1.320614101 0.53096443 0.319814426 1.233520055 0.803617627 0.966053641 1.037323508 0.672455976 0.768811892 1 12.55844402 -4.238774454 24.08491417 0.813452194 1.320615013 0.267674243 0.251019858 5542.873063 5889997.478 0.064549324 3.198103484 5.77E-05 4.238774454 0.507162819 EKPS(ph)SPAKGSEGPGK ddPTM_HeLa_A486_30min_R1 1 EKPSSPAKGSEGPGK 15 2 O14503 O14503 BHLHE40 Class E basic helix-loop-helix protein 40 1 0 EKPS(0.5)S(0.5)PAKGSEGPGK 94.856 0.00040648 605630000 1022700 754850 233870 604240 663210 1016300 1454400 1377600 544940 2129700 TRUE FALSE FALSE 951014.0112 695032.9369 324430.7273 1406701.257 580024.0176 890919.239 1090493.737 1063950.553 592175.838 1596409.258 0.595720682 0.435372655 0.203225286 0.88116581 0.363330402 0.558076968 0.683091589 0.666464785 0.370942373 1 20.60639912 -14 0.229497523 3.480145759 0.479337362 0.359925491 0.185789718 176.0146777 1.762300346 203.0115236 0.318594687 1.00E-14 14 -3.000808397 EKPSS(ph)PAKGSEGPGK ddPTM_HeLa_A485_30min_R1 1 EKPSSPAKGSEGPGK 15 2 O14503 O14503 BHLHE40 Class E basic helix-loop-helix protein 40 1 0 EKPS(0.169)S(0.827)PAKGS(0.004)EGPGK 68.168 0.0048598 610170000 350610 245680 146710 628070 352820 547480 1131900 933120 350960 1309400 TRUE FALSE FALSE 428601.9849 274410.1389 200984.1341 662379.8737 317692.002 576145.2062 890060.3182 704270.8569 421394.4528 982990.6777 0.436018362 0.279158435 0.204461892 0.67384146 0.323189232 0.586114619 0.905461607 0.71645731 0.428686113 1 19.90681821 -6.477852816 4.520524196 0.741266083 0.386375714 0.492784705 0.180848805 0.195911301 8.856158256 0.067443118 0.056888514 3.33E-07 6.477852816 -0.354890369 EKPSS(ph)PAKGSEGPGK ddPTM_HeLa_A486_30min_R1 1 EKPSSPAKGSEGPGK 15 2 O14503 O14503 BHLHE40 Class E basic helix-loop-helix protein 40 1 0 EKPS(0.252)S(0.747)PAKGS(0.001)EGPGK 107.18 0.00012673 638960000 1141200 780560 235520 652940 690530 1151500 1510100 1431200 641110 2178100 TRUE FALSE FALSE 1061207.773 718705.5828 326719.6514 1520077.318 603917.2885 1009439.638 1132257.008 1105347.003 696681.931 1632689.583 0.649975221 0.440197322 0.20011131 0.93102653 0.369891065 0.618267948 0.693491904 0.677009895 0.426708137 1 20.63881909 -13.99999999 0.202363406 3.00614576 0.489355119 0.311599501 0.195552981 171.6562717 1.701924086 139.5991813 0.448198557 1.00E-14 13.99999999 -2.516790641 EKPTDTEGLEGS(ph)PEKHEPSAVPATEAGEGQQPWGR ddPTM_HeLa_A486_30min_R1 1 EKPTDTEGLEGSPEKHEPSAVPATEAGEGQQPWGR 35 2 O60237;O60237-6 O60237 PPP1R12B Protein phosphatase 1 regulatory subunit 12B 1 0 EKPT(0.011)DT(0.018)EGLEGS(0.971)PEKHEPSAVPATEAGEGQQPWGR 98.509 4.59E-05 265220000 46213 51869 34370 19946 41195 53071 74868 80664 48715 81805 TRUE FALSE FALSE 42973.70734 47758.71154 47678.98446 46435.29602 36027.93897 46523.63961 56135.23453 62298.56808 52937.65542 61320.49554 0.700804959 0.778837665 0.777537494 0.75725572 0.587535027 0.758696406 0.915440001 1.015950174 0.863294645 1 15.90408174 -6.773270798 3.816155004 0.955736029 0.724150479 0.747412832 0.063774307 0.114758271 3.632056966 0.027945308 0.019374754 1.69E-07 6.773270798 -0.23158555 EKPVLNMRT(ph)PDTAK ddPTM_HeLa_A485_30min_R1 1 EKPVLNMRTPDTAK 14 2 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 EKPVLNMRT(1)PDTAK 112.82 0.00022142 89394000 228080 211770 149180 292900 356240 296110 442290 455590 250220 438660 TRUE FALSE FALSE 278815.6091 236534.6593 204367.8899 308900.3853 320771.4948 311613.8617 347791.1283 343855.8382 300436.8588 329310.1349 0.84666574 0.718273245 0.620593988 0.93802271 0.974071128 0.946262592 1.05612033 1.044170226 0.912321933 1 18.32908739 -5.404604854 5.20851656 0.989381992 0.72894396 0.765461209 0.06461272 0.106434562 4.110395456 0.018982986 0.028389931 3.94E-06 5.404604854 -0.260438032 EKPVLNMRT(ph)PDTAK ddPTM_HeLa_A486_30min_R1 1 EKPVLNMRTPDTAK 14 2 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 EKPVLNMRT(1)PDTAK 121.74 5.46E-05 363740000 488600 423210 271530 275180 530120 552030 739930 738180 358380 709160 TRUE FALSE FALSE 454351.6631 389673.2983 376673.6878 640632.9468 463627.4064 483926.1512 554791.6878 570112.5284 389444.667 531581.7201 0.854716492 0.733044955 0.70859037 1.205144802 0.872165819 0.910351378 1.043662088 1.072483321 0.732614859 1 19.01993197 -5.220515747 24.99579451 0.975330531 0.762209979 0.378683837 0.123931587 525.1098338 320731.8007 0.032690164 0.056620229 6.02E-06 5.220515747 -0.213120552 EKQEASES(ph)PVK ddPTM_HeLa_A485_30min_R1 3 EKQEASESPVK 11 1 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 1 0 EKQEASES(1)PVK;EKQEAS(0.013)ES(0.987)PVK;EKQEAS(0.003)ES(0.997)PVK ;; 142.57 5.32E-07 4291820000 4185050 2557850 1505790 6774700 3353840 3229310 5909580 4398740 2628880 8225600 TRUE FALSE FALSE 5115999.934 2856968.307 2062844.382 7144784.707 3019919.914 3398391.678 4646949.956 3319942.118 3156472.102 6175109.301 0.828487349 0.462658743 0.334057955 1.157029675 0.4890472 0.550337089 0.752529183 0.537632932 0.511160523 1 22.55803324 -10.06986642 4.667404399 1.000013929 0.622121021 0.203265615 0.222809607 294142419 2.36311273 54436.10806 0.052783673 8.51E-11 10.06986642 -0.377892908 EKQEASES(ph)PVK ddPTM_HeLa_A486_30min_R1 6 EKQEASESPVK 11 1 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 1 0 EKQEAS(0.005)ES(0.995)PVK;EKQEAS(0.062)ES(0.938)PVK;EKQEASES(1)PVK;EKQEASES(1)PVK;EKQEAS(0.006)ES(0.994)PVK;EKQEAS(0.277)ES(0.723)PVK ;;;;; 131.61 1.85E-05 7016180000 4799610 4303960 1644880 2656360 3203120 5394980 6908760 5885540 3462660 8410650 TRUE FALSE FALSE 4463182.124 3962898.535 2281821.587 6184140.325 2801354.822 4729402.22 5180115.175 4545531.022 3762806.157 6304568.496 0.707928247 0.628575697 0.361931445 0.980898269 0.444337281 0.750154784 0.821644682 0.720990029 0.596838017 1 22.5879662 -14 0.176021131 2.311987047 0.597715409 0.260976436 0.168041957 181.0333388 1.728910389 83.11394079 0.539686412 1.00E-14 14 -1.714271637 EKQEEEVDYES(ph)EEEEEREGEENDDEDMQEER ddPTM_HeLa_A485_30min_R1 1 EKQEEEVDYESEEEEEREGEENDDEDMQEER 31 2 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 EKQEEEVDYES(1)EEEEEREGEENDDEDMQEER 342.8 1.26E-128 719460000 170270 140430 130070 251190 201310 172230 221870 199420 180930 324000 TRUE FALSE FALSE 208145.9741 156852.0669 178188.3057 264911.8737 181266.8696 181247.6965 174465.662 150511.9323 217240.9914 243232.7628 0.855748098 0.64486406 0.732583488 1.089129074 0.745240351 0.745161525 0.717278626 0.618797939 0.893140336 1 17.89197804 EKQEEEVDYES(ph)EEEEEREGEENDDEDMQEER ddPTM_HeLa_A486_30min_R1 1 EKQEEEVDYESEEEEEREGEENDDEDMQEER 31 2 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 EKQEEEVDYES(1)EEEEEREGEENDDEDMQEER 307.96 4.19E-96 1150800000 203340 207800 106280 118750 144380 228470 252040 229200 186220 242880 TRUE FALSE FALSE 189086.916 191333.1712 147434.4623 276456.0013 126270.5141 200283.6943 188976.9262 177016.1634 202361.6995 182061.2671 1.038589476 1.050927384 0.809806856 1.518477849 0.693560559 1.100089533 1.03798534 0.972288978 1.111503302 1 17.4740645 EKQEEEVDYES(ph)EEEEEREGEENDDEDMQEERNPHR ddPTM_HeLa_A485_30min_R1 1 EKQEEEVDYESEEEEEREGEENDDEDMQEERNPHR 35 3 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 EKQEEEVDYES(1)EEEEEREGEENDDEDMQEERNPHR 284.48 6.92E-79 173600000 29028 33704 30910 38165 64296 56816 84383 112050 42979 66516 TRUE FALSE FALSE 35485.17845 37645.38961 42344.89527 40249.85731 57894.46448 59790.79791 66353.8827 84569.56181 51604.49107 49934.78534 0.71063044 0.753891087 0.848003951 0.80604847 1.159401489 1.19737769 1.328810813 1.693600188 1.033437727 1 15.60775755 -5.869518429 1.60581993 1.31008967 0.756634859 0.589103556 0.184839404 0.24019344 1.279933188 0.068226325 0.084126999 1.35E-06 5.869518429 -0.553454811 EKQIESSDYDSSSSK(ac)GK(ac)K ddPTM_HeLa_A485_30min_R1 1 EKQIESSDYDSSSSKGKK 18 3 Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-8 Q9UNL4-3 ING4 Inhibitor of growth protein 4 0 2 EKQIESSDYDSSSSK(1)GK(1)K 126.19 1.10E-06 112680000 4126.1 4447.2 3379.5 6599.2 6350.1 5610.2 7980 8507.7 5967 10519 FALSE TRUE FALSE 5043.93671 4967.261355 4629.717683 6959.697586 5717.861747 5903.941397 6275.007809 6421.173235 7164.522167 7896.806888 0.638731171 0.629021505 0.586277181 0.881330604 0.724072632 0.747636542 0.794625967 0.813135401 0.90726825 1 12.9470537 -3.642929267 0.101172578 1.179402295 1.43E-09 0.740274287 0.064469129 35.08278479 0.475298134 1.111253268 5.996971325 0.000227547 3.642929267 -1.179402293 EKQLS(ph)PEAQAR ddPTM_HeLa_A485_30min_R1 4 EKQLSPEAQAR 11 1 A0A0U1RRH6;O94880;B4DG57;O94880-2 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 EKQLS(1)PEAQAR;EKQLS(1)PEAQAR;EKQLS(1)PEAQAR;EKQLS(1)PEAQAR ;;; 128.71 2.38E-05 1279040000 1134100 1367850 1043990 1327660 1657550 1471480 1971610 2250740 1223480 1800450 TRUE FALSE FALSE 1386376.632 1527808.159 1430205.345 1400186.704 1492518.502 1548524.417 1550359.417 1698742.486 1469021.214 1351630.95 1.025706486 1.130344166 1.058133025 1.035923825 1.104235222 1.145671026 1.147028645 1.256809402 1.086850825 1 20.36626986 -6.047023666 3.738073598 1.144050369 1.066975332 0.151036848 0.066037399 0.351615905 10.09060413 0.021494152 0.022470556 8.97E-07 6.047023666 -0.077075037 EKQLS(ph)PEAQAR ddPTM_HeLa_A486_30min_R1 3 EKQLSPEAQAR 11 1 A0A0U1RRH6;O94880;B4DG57;O94880-2 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 EKQLS(1)PEAQAR;EKQLS(1)PEAQAR;EKQLS(1)PEAQAR ;; 115.56 0.0001705 681960000 981900 912640 586170 384237 1038870 931550 1136110 1185900 775740 1141290 TRUE FALSE FALSE 913073.8805 840319.0826 813150.7222 894523.1543 908565.2375 816624.8323 851843.2615 915896.458 842981.7678 855503.5554 1.06729408 0.982250836 0.950493679 1.045610095 1.062023918 0.954554574 0.995721474 1.070593398 0.985363255 1 19.70641432 -6.243282977 24.97035562 1.0053133 1.016742904 0.043295696 0.042864843 5529.068998 7604122.858 0.014949815 0.01487923 5.71E-07 6.243282977 0.011429604 EKQS(ph)DDEVYAPGLDIESSLK ddPTM_HeLa_A485_30min_R1 4 EKQSDDEVYAPGLDIESSLK 20 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK ;;; 237.65 2.15E-46 586360000 1306130 907352 579936 2474060 1515500 1358280 2539250 2281270 1036606 3280190 TRUE FALSE FALSE 1596674.112 1013458.923 794478.4596 2609211.633 1364611.499 1429397.44 1996718.494 1721784.956 1244643.316 2462499 0.648395842 0.41155709 0.322630977 1.059578758 0.554157179 0.580466201 0.810850479 0.699202296 0.505439115 1 21.23169171 -14 0.113331637 2.117157031 0.433488241 0.246018757 0.19736759 243.6408533 1.817883368 64.07994199 2.321002248 1.00E-14 14 -1.68366879 EKQS(ph)DDEVYAPGLDIESSLK ddPTM_HeLa_A486_30min_R1 4 EKQSDDEVYAPGLDIESSLK 20 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK ;;; 260.46 4.72E-59 958590000 1052800 944287 419201 848359 857854 1399500 1810710 1646370 754377 2248500 TRUE FALSE FALSE 979004.1567 869458.2591 581526.8538 1975022.626 750253.9521 1226843.919 1357651.206 1271527.491 819767.0058 1685460.965 0.580852465 0.515857844 0.345025406 1.171799684 0.445132796 0.727898151 0.805507357 0.754409338 0.486375551 1 20.68471178 -14 0.047029324 2.218506798 1.50E-10 0.177231173 0.223914162 1139.343288 3.966365341 186.1643527 45.36033701 1.00E-14 14 -2.218506798 EKRES(ph)VAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A485_30min_R1 3 EKRESVASGDDRAEEDMDEAIEK 23 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 EKRES(1)VAS(1)GDDRAEEDMDEAIEK;EKRES(1)VAS(1)GDDRAEEDMDEAIEK;EKRES(1)VAS(1)GDDRAEEDMDEAIEK ;; 161.13 1.97E-14 3176950000 1113020 763100 484013 1815500 872490 953970 1586340 1274580 749971 2167060 TRUE FALSE FALSE 1360607.459 852337.9069 663069.5502 1914676.168 785621.8321 1003918.394 1247405.5 961987.2565 900483.3006 1626851.824 0.836343814 0.523918586 0.40757833 1.176921057 0.482909273 0.617092706 0.766760366 0.591318301 0.553512795 1 20.63365142 -10.32752356 4.989235516 1.000150139 0.659869538 0.189114542 0.210047716 0.000341045 4.60E-05 0.197724193 0.047934146 4.70E-11 10.32752356 -0.340280601 EKRES(ph)VAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A486_30min_R1 3 EKRESVASGDDRAEEDMDEAIEK 23 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 EKRES(1)VAS(1)GDDRAEEDMDEAIEK;EKRES(1)VAS(1)GDDRAEEDMDEAIEK;EKRES(1)VAS(1)GDDRAEEDMDEAIEK ;; 242.19 4.91E-49 2084850000 848600 643180 264269 459760 474560 913610 1129880 949410 585080 1632120 TRUE FALSE FALSE 789117.5222 592212.0744 366601.0342 1070344.515 415036.2597 800898.0871 847172.0733 733250.0685 635795.2055 1223426.529 0.645006058 0.484060187 0.299651042 0.874874371 0.339240853 0.654635214 0.692458479 0.599341318 0.519684011 1 20.22249603 -14 0.246083604 3.557345304 0.526645273 0.393935203 0.160685823 178.6466559 1.777803144 229.333143 0.233429249 1.00E-14 14 -3.030700031 EKRT(ph)PAPEPEPCEASELPAKR ddPTM_HeLa_A485_30min_R1 1 EKRTPAPEPEPCEASELPAKR 21 3 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 EKRT(1)PAPEPEPCEASELPAKR 123.53 2.34E-06 350370000 143170 143960 107450 184620 234070 201310 294630 368800 154240 271170 TRUE FALSE FALSE 175017.6726 160794.8697 147200.2264 194705.3231 210765.1689 211850.2803 231679.8936 278351.2217 185194.5532 203572.3095 0.859732215 0.789866117 0.723085702 0.956443062 1.035333192 1.04066354 1.138071745 1.367333418 0.909723693 1 17.63518181 -5.676572451 1.618268916 1.116831748 0.789034956 0.54155896 0.118097777 0.266627453 1.441501353 0.041640342 0.060492327 2.11E-06 5.676572451 -0.327796791 EKRT(ph)PAPEPEPCEASELPAKR ddPTM_HeLa_A486_30min_R1 1 EKRTPAPEPEPCEASELPAKR 21 3 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 EKRT(1)PAPEPEPCEASELPAKR 143.25 2.86E-09 352590000 160930 140480 81003 75908 188310 155310 220950 230270 99216 200600 TRUE FALSE FALSE 149649.638 129347.8532 112369.5309 176717.6602 164690.4039 136149.4313 165665.973 177842.5478 107816.1228 150368.4543 0.995219634 0.860206044 0.74729458 1.175230942 1.095245706 0.90543879 1.101733564 1.182711817 0.717012908 1 17.19814241 -5.256915887 24.98581203 1.034052126 0.86683669 0.206017688 0.141204775 581.5314285 3212116.998 0.038145931 0.063290819 5.53E-06 5.256915887 -0.167215436 EKS(ph)ATRPS(ph)PS(ph)PER ddPTM_HeLa_A485_30min_R1 1 EKSATRPSPSPER 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 EKS(0.543)AT(0.463)RPS(0.995)PS(0.999)PER 65.808 0.01692 610540000 933230 778090 640570 1362800 1203100 866500 1288000 1304300 789500 1747600 TRUE FALSE FALSE 1140823.794 869080.857 877543.4993 1437246.313 1083315.14 911868.6001 1012808.278 984418.3799 947945.4083 1311955.482 0.869559836 0.662431667 0.668882071 1.095499301 0.825725533 0.695045383 0.771983723 0.750344347 0.722543883 1 20.32328734 -11.36470396 2.173799795 2.34067329 0.783998802 0.22098982 0.121281167 5581477.967 478357.2566 36984149.51 0.03166963 4.32E-12 11.36470396 -1.556674488 EKS(ph)ATRPS(ph)PS(ph)PER ddPTM_HeLa_A486_30min_R1 2 EKSATRPSPSPER 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 EKS(0.995)AT(0.064)RPS(0.946)PS(0.996)PER;EKS(0.864)AT(0.14)RPS(0.999)PS(0.998)PER ; 108.75 0.00036447 1995130000 2574400 2121250 1146340 1341630 2170320 2582700 3157300 3011700 1674820 3675800 TRUE FALSE FALSE 2393947.854 1953154.425 1590233.548 3123382.442 1898098.228 2264072.733 2367310.145 2326001.655 1819994.746 2755355.755 0.868834397 0.708857439 0.577142732 1.133567757 0.688875919 0.821698878 0.859166785 0.844174714 0.660529858 1 21.39380717 -11.4177693 2.17411916 2.638207375 0.797706759 0.150456406 0.145457328 13268074.53 578199.1316 108021294.6 0.039213532 3.82E-12 11.4177693 -1.840500616 EKS(ph)KNHSR ddPTM_HeLa_A486_30min_R1 1 EKSKNHSR 8 2 H7C118 H7C118 PPP1R7 1 0 EKS(1)KNHSR 70.056 0.011862 732210000 381370 671570 453200 480420 1140800 1020800 1349900 1393600 627540 908240 TRUE FALSE FALSE 354637.9324 618352.3474 628691.1771 1118442.039 997710.2265 894864.0747 1012140.742 1076307.702 681935.6725 680810.7923 0.520905274 0.908258733 0.923444787 1.642808915 1.465473576 1.314409355 1.48666965 1.580920447 1.001652265 1 19.37689438 -4.941263655 2.29736676 1.386108541 0.67155125 0.571171601 0.22747113 0.20009137 2.093901746 0.061836461 0.164924785 1.14E-05 4.941263655 -0.714557291 EKS(ph)PPDQPAVPHPPPSTPIK ddPTM_HeLa_A485_30min_R1 2 EKSPPDQPAVPHPPPSTPIK 20 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;H0YG19 P35611 ADD1 Alpha-adducin 1 0 EKS(1)PPDQPAVPHPPPSTPIK;EKS(1)PPDQPAVPHPPPSTPIK ; 153.59 5.44E-10 295350000 513270 380410 201404 732910 358220 397680 580720 463490 334660 867810 TRUE FALSE FALSE 627445.1407 424895.6404 275911.7207 772947.0175 322554.359 418501.9099 456644.428 349818.3508 401823.1923 651480.9379 0.963105909 0.652199651 0.423514649 1.186446099 0.495109435 0.642385503 0.700932907 0.53695869 0.616784266 1 19.31336344 -10.26164178 5.143571785 1.000050178 0.684995831 0.156240702 0.215160375 0.000119728 1.72E-05 0.201463272 0.048854256 5.47E-11 10.26164178 -0.315054347 EKS(ph)PPDQPAVPHPPPSTPIK ddPTM_HeLa_A486_30min_R1 2 EKSPPDQPAVPHPPPSTPIK 20 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;H0Y9H2;H0YG19 P35611 ADD1 Alpha-adducin 1 0 EKS(1)PPDQPAVPHPPPSTPIK;EKS(1)PPDQPAVPHPPPSTPIK ; 136.71 1.18E-07 543560000 789700 681470 245010 241500 445140 834430 888060 712450 546090 1191530 TRUE FALSE FALSE 734346.108 627467.8353 339884.4336 562224.2047 389306.3904 731486.5105 665857.9951 550240.6877 593425.5209 893163.1324 0.822185871 0.702523215 0.380540151 0.629475383 0.43587378 0.818984219 0.745505464 0.616058442 0.664408885 1 19.76856418 -6.281264985 24.93717703 0.743527179 0.590240755 0.241469797 0.151569372 1390.50011 1749002.724 0.054213967 0.047874512 5.23E-07 6.281264985 -0.153286424 EKS(ph)PSLGK ddPTM_HeLa_A485_30min_R1 2 EKSPSLGK 8 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 EKS(0.965)PS(0.035)LGK;EKS(0.987)PS(0.013)LGK ; 108.9 0.00061963 1549980000 1789690 1015310 689590 2763600 1627400 1423590 2264600 1975450 1328180 3775000 TRUE FALSE FALSE 2187800.366 1134041.672 944698.0372 2914568.47 1465370.342 1498126.971 1780749.71 1490967.79 1594733.543 2833961.974 0.771993551 0.400161217 0.333348876 1.028443041 0.517074807 0.528633406 0.628360481 0.526107197 0.56272228 1 21.43438897 -10.17075876 5.083119939 1.000025355 0.583901871 0.307431266 0.185153609 249570121.4 1.074109603 74063.11641 0.04434094 6.75E-11 10.17075876 -0.416123484 EKS(ph)PSLGK ddPTM_HeLa_A486_30min_R1 2 EKSPSLGK 8 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 EKS(0.999)PS(0.001)LGK;EKS(0.908)PS(0.092)LGK ; 141.08 0.00020091 1276020000 1467140 1202630 532270 707480 1009950 1804120 1879030 1579800 1012240 2198490 TRUE FALSE FALSE 1364301.062 1107329.219 738379.1987 1647049.194 883272.6536 1581546.017 1408876.82 1220114.027 1099981.778 1647973.794 0.827865751 0.671933755 0.448052755 0.999438947 0.535974939 0.959691242 0.854914577 0.740372226 0.667475285 1 20.65226187 -5.263885732 24.99077522 0.806856435 0.651549065 0.184932824 0.164377145 397.2756962 4058396.153 0.04453638 0.069671381 5.45E-06 5.263885732 -0.15530737 EKS(ph)PSLGKK ddPTM_HeLa_A485_30min_R1 3 EKSPSLGKK 9 2 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 EKS(0.991)PS(0.009)LGKK;EKS(0.975)PS(0.025)LGKK;EKS(0.859)PS(0.141)LGKK ;; 84.605 0.0022822 2699400000 5563090 2605809 959824 6895030 2145703 4953900 5381880 7783010 2965045 8804940 TRUE FALSE FALSE 6800580.178 2910535.695 1314902.839 7271688.03 1932069.275 5213278.544 4231997.372 5874214.594 3560102.334 6610030.501 1.028827352 0.440321069 0.198925382 1.100099013 0.292293549 0.788692056 0.640238706 0.88868192 0.538590909 1 22.6562255 -9.837691057 0.309049888 1.167696728 0.604355657 0.108777805 0.285616669 26.42217369 2.275058273 4.413530522 0.29618707 1.45E-10 9.837691057 -0.563341071 EKS(ph)PSLGKK ddPTM_HeLa_A486_30min_R1 1 EKSPSLGKK 9 2 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 EKS(0.988)PS(0.012)LGKK 63.408 0.011079 645510000 2575700 919950 668890 1692400 754630 4043900 2356200 1783000 1725000 3754400 TRUE FALSE FALSE 2395156.731 847049.8116 927902.1215 3939992.729 659977.2688 3545004.733 1766653.839 1377049.823 1874524.389 2814273.803 0.851074522 0.30098344 0.329712809 1.400003342 0.234510682 1.259651683 0.627747676 0.489309115 0.666077475 1 21.42433127 EKS(ph)PVREPVDNLSPEER ddPTM_HeLa_A485_30min_R1 4 EKSPVREPVDNLSPEER 17 2 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 0 EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER ;;; 271.72 1.21E-59 7367100000 2032150 1874920 1505060 2812640 2633210 2484110 3420110 3530450 1974930 3762380 TRUE FALSE FALSE 2484194.757 2094175.584 2061844.325 2966287.401 2371038.367 2614174.158 2689375.559 2664601.602 2371280.336 2824487.907 0.879520408 0.741435493 0.729988724 1.050203612 0.839457786 0.925539158 0.952163949 0.943392816 0.839543455 1 21.42955789 -5.243562573 24.99899404 0.929644007 0.779426931 0.489442612 0.070961596 690.4732617 965559.31 0.018523937 0.032002473 5.71E-06 5.243562573 -0.150217077 EKS(ph)PVREPVDNLSPEER ddPTM_HeLa_A486_30min_R1 4 EKSPVREPVDNLSPEER 17 2 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 0 EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER;EKS(1)PVREPVDNLSPEER ;;; 283.19 4.29E-60 8358300000 1368620 1444530 789140 695077 1441420 1604710 2013280 1975290 1146420 2055720 TRUE FALSE FALSE 1272686.806 1330060.182 1094716.142 1618174.383 1260623.663 1406737.196 1509536.05 1525559.587 1245792.609 1540954.332 0.825908192 0.863140558 0.710414397 1.050111837 0.818079833 0.912899991 0.979611153 0.990009604 0.808455243 1 20.55539268 -5.25533709 24.99994367 0.932420982 0.806153008 0.374466766 0.080986197 563.7549378 2309592.689 0.021477472 0.035997992 5.55E-06 5.25533709 -0.126267974 EKS(ph)TFREESPLR ddPTM_HeLa_A485_30min_R1 1 EKSTFREESPLR 12 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EKS(0.385)T(0.385)FREES(0.231)PLR 52.823 0.032553 179870000 38557 69802 114920 90182 348730 165350 269920 440400 152560 181520 TRUE FALSE FALSE 47133.87163 77964.7367 157433.6902 95108.41431 314009.2167 174007.4703 212249.387 332391.2095 183177.3926 136270.4046 0.345884873 0.572132569 1.155303609 0.697938885 2.304309711 1.276927817 1.557560407 2.439203218 1.344219922 1 17.05611274 -5.175409998 1.080540285 1.693682782 0.362885038 0.453232381 0.483718255 0.518247077 1.098407467 0.172147193 0.556083708 6.68E-06 5.175409998 -1.330797744 EKS(ph)TFREESPLR ddPTM_HeLa_A486_30min_R1 2 EKSTFREESPLR 12 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EKS(0.752)T(0.105)FREES(0.143)PLR;EKS(0.773)T(0.148)FREES(0.08)PLR ; 76.151 0.0060538 2344530000 451250 461217 782913 534485 2039670 768186 1302814 1785230 558861 648422 TRUE FALSE FALSE 419619.7053 424668.4852 1086077.881 1244308.091 1783835.569 673415.0217 976836.1574 1378772.1 607303.5215 486052.9107 0.863321042 0.873708347 2.234484882 2.560026005 3.670044002 1.38547678 2.009732142 2.836670803 1.249459695 1 18.89075385 -2.751449341 10.74813088 1.961619821 1.588887438 0 0.909556189 0 0 0.216060818 0 0.001772355 2.751449341 -0.372732384 EKSAT(ph)RPS(ph)PS(ph)PER ddPTM_HeLa_A485_30min_R1 1 EKSATRPSPSPER 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 EKS(0.338)AT(0.667)RPS(0.997)PS(0.998)PER 64.454 0.023195 844240000 851250 734610 550310 1223700 1044700 878010 1206600 1186400 719870 1637800 TRUE FALSE FALSE 1040607.626 820516.2492 753892.5693 1290547.632 940685.9998 923981.2459 948800.053 895433.5398 864341.306 1229526.601 0.8463482 0.667343226 0.613156778 1.049629696 0.765079827 0.751493497 0.771679158 0.728275044 0.702987072 1 20.22967152 -11.35790717 2.176583329 2.408714439 0.76572455 0.281346403 0.11208701 6983884.559 680662.2256 48549438.49 0.028317789 4.39E-12 11.35790717 -1.642989889 EKSAT(ph)RPSPS(ph)PER ddPTM_HeLa_A485_30min_R1 1 EKSATRPSPSPER 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 EKS(0.383)AT(0.489)RPS(0.133)PS(0.994)PER 55.864 0.033045 277500000 215960 386580 252740 178540 351330 419690 465430 659310 237060 233320 TRUE FALSE FALSE 263999.5569 431787.1682 346239.0434 188293.1881 316350.3516 441664.3194 365987.0783 497613.1887 284635.7676 175157.6179 1.507211391 2.465134964 1.976728432 1.074992857 1.806089597 2.521525039 2.089472799 2.84094517 1.625026481 1 17.41829421 -6.04185508 24.47082989 2.138274637 1.7746967 0.023968475 0.572778916 1026.719971 600275.6219 0.18521914 0.185239584 9.08E-07 6.04185508 -0.363577937 EKSTFREES(ph)PLR ddPTM_HeLa_A485_30min_R1 4 EKSTFREESPLR 12 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EKS(0.037)T(0.012)FREES(0.95)PLR;EKSTFREES(1)PLR;EKSTFREES(1)PLR;EKS(0.009)T(0.009)FREES(0.982)PLR ;;; 160.8 1.40E-10 5775470000 563279 739735 1433350 1142840 4561150 2003320 3529560 5798860 1982420 2227670 TRUE FALSE FALSE 688578.4703 826240.5734 1963605.812 1205270.455 4107025.891 2108210.737 2775440.672 4376680.493 2380273.51 1672352.866 0.411742333 0.494058754 1.17415759 0.720703435 2.455836907 1.260625541 1.659602305 2.617079554 1.423308177 1 20.67344786 -5.316260486 1.325439219 1.780701057 0.466691266 0.438637719 0.534644138 0.399449188 1.364703754 0.17915761 0.414316252 4.83E-06 5.316260486 -1.314009791 EKSTFREES(ph)PLR ddPTM_HeLa_A486_30min_R1 4 EKSTFREESPLR 12 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EKS(0.002)T(0.014)FREES(0.984)PLR;EKSTFREES(1)PLR;EKST(0.001)FREES(0.999)PLR;EKSTFREES(1)PLR ;;; 148.57 6.72E-08 7195710000 1580130 1772172 3025340 1938860 7596770 2904310 5244900 6804540 1829220 2272590 TRUE FALSE FALSE 1469371.047 1631738.637 4196832.669 4513764.065 6643912.27 2546005.761 3932570.545 5255294.784 1987778.262 1703518.672 0.862550597 0.957863664 2.46362587 2.649671024 3.90011121 1.494557003 2.308498645 3.084964592 1.166866143 1 20.70008633 -2.464979656 12.19275115 2.097937108 1.56788877 0 0.998343797 0 0 0.234692907 0 0.003427838 2.464979656 -0.530048338 EKT(ph)PAT(ph)TPEAR ddPTM_HeLa_A485_30min_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 2 0 EKT(1)PAT(0.749)T(0.251)PEAR 101.42 0.0009396 421040000 509840 466170 365100 906700 749760 533820 914670 909510 467800 1160400 TRUE FALSE FALSE 623252.1491 520684.5264 500165.6831 956230.7251 675111.2618 561769.9898 719243.2823 686451.2464 561683.1691 871133.6356 0.715449529 0.597709129 0.574154943 1.09768546 0.774980134 0.644872344 0.825640583 0.787997637 0.64477268 1 19.73253453 -11.64871411 2.1612919 7.46478485 0.743906695 0.227709576 0.143312241 6385039.226 306235.1436 203561980.1 0.037386341 2.25E-12 11.64871411 -6.720878155 EKT(ph)PATT(ph)PEAR ddPTM_HeLa_A486_30min_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 2 0 EKT(1)PAT(0.435)T(0.565)PEAR 98.328 0.0012805 489840000 771770 813970 414070 520190 739610 938710 1229500 1121500 626770 1330800 TRUE FALSE FALSE 717672.9084 749468.0528 574408.9932 1211028.609 646841.2172 822901.5043 921866.0957 866158.9322 681098.9283 997559.0179 0.719429022 0.751301967 0.575814546 1.213991941 0.648424009 0.824915107 0.924121861 0.868278384 0.682765547 1 19.92804267 -1.000000001 0.044549343 1.294851865 8.90E-08 0.109648833 0.16972714 1526.668734 5.170970086 38.46139228 142.3680677 0.1 1.000000001 -1.294851776 EKT(ph)PATTPEAR ddPTM_HeLa_A485_30min_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 EKT(0.333)PAT(0.333)T(0.333)PEAR 70.889 0.015434 219690000 212680 251150 179400 210720 270070 228250 264510 318430 196500 290160 TRUE FALSE FALSE 259989.9323 280519.8078 245767.5255 222231.1 243180.8825 240200.8171 207995.2777 240334.5432 235935.7476 217828.452 1.193553596 1.287801503 1.128261819 1.020211538 1.11638714 1.102706349 0.954858173 1.103320255 1.083126403 1 17.73283288 -4.952311079 4.571394174 1.059735888 1.23861035 0.658145636 0.053207711 0.11569919 5.274193953 0.013991066 0.030039716 1.12E-05 4.952311079 0.178874462 EKT(ph)PATTPEAR ddPTM_HeLa_A486_30min_R1 2 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 EKT(0.45)PAT(0.45)T(0.099)PEAR;EKT(0.333)PAT(0.333)T(0.333)PEAR ; 103.83 0.0010157 266540000 847800 839510 484920 314780 759220 785500 861800 881860 577750 954850 TRUE FALSE FALSE 788373.598 772984.1702 672694.0106 732823.7481 663991.5482 688592.9964 646168.5248 681079.7289 627829.8352 715749.345 1.101466042 1.079964901 0.939845793 1.023855283 0.927687259 0.962058857 0.902786051 0.951561791 0.877164387 1 19.44909492 -4.192747109 0.679466747 0.932073474 1.244727515 0.629112947 0.042619063 1.972299491 0.650588665 0.017570976 0.488285108 6.42E-05 4.192747109 0.312654041 EKT(ph)PELPEPSVK ddPTM_HeLa_A485_30min_R1 6 EKTPELPEPSVK 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EKT(0.998)PELPEPS(0.002)VK;EKT(1)PELPEPSVK;EKT(1)PELPEPSVK;EKT(0.998)PELPEPS(0.002)VK;EKT(1)PELPEPSVK;EKT(1)PELPEPSVK ;;;;; 157.38 7.60E-08 50878500000 28705970 18370680 10644310 56479700 30181280 24685450 52515500 46369800 18451310 72534400 TRUE FALSE FALSE 35091513.99 20518971.22 14582083.22 59565043 27176325.79 25977941.99 41295134.41 34997533.84 22154318.67 54452908.98 0.644437821 0.376820479 0.267792548 1.093881743 0.499079412 0.477071702 0.758364157 0.642711923 0.406852803 1 25.69850579 -11.13375857 2.424187941 1.892846265 0.576963525 0.249959675 0.221271821 18944405.05 5714156.073 92854354.76 0.05781333 7.35E-12 11.13375857 -1.315882741 EKT(ph)PELPEPSVK ddPTM_HeLa_A486_30min_R1 6 EKTPELPEPSVK 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EKT(1)PELPEPSVK;EKT(0.954)PELPEPS(0.046)VK;EKT(1)PELPEPSVK;EKT(1)PELPEPSVK;EKT(1)PELPEPSVK;EKT(0.999)PELPEPS(0.001)VK ;;;;; 188.63 9.28E-13 37452260000 7166190 6144650 2041530 5064900 4790300 8388960 12046170 10333420 4574540 14150300 TRUE FALSE FALSE 6663877.087 5657725.556 2832065.09 11791343.17 4189455.906 7354015.408 9032090.855 7980725.843 4971064.81 10606972.78 0.628254378 0.533396821 0.267000317 1.111659605 0.394971873 0.693318967 0.851523903 0.752403726 0.468660089 1 23.33850964 -14 0.104912787 2.069204676 0.426534547 0.185006641 0.228961764 303.6707015 2.140060262 71.6450437 3.28660282 1.00E-14 14 -1.642670129 EKT(ph)PPRPQGQRPEPENR ddPTM_HeLa_A485_30min_R1 3 EKTPPRPQGQRPEPENR 17 3 A9X3U0;Q96GF1 A9X3U0 RNF185 E3 ubiquitin-protein ligase RNF185 1 0 EKT(1)PPRPQGQRPEPENR;EKT(1)PPRPQGQRPEPENR;EKT(1)PPRPQGQRPEPENR ;; 103.26 0.00035088 1121930000 195176 140644 83058 253212 164081 150560 228651 293523 126474 535800 TRUE FALSE FALSE 238592.2279 157091.0924 113784.6105 267044.3304 147744.5195 158443.0888 179797.8459 221536.024 151856.1717 402234.9207 0.59316637 0.390545635 0.282880985 0.663901409 0.367309032 0.393906846 0.446997107 0.550762782 0.377531049 1 18.61767881 -10.45892058 2.844407073 1.015893132 0.449920803 0.687099237 0.110957158 13822679.34 15386348.61 1744084.27 0.027846426 3.48E-11 10.45892058 -0.565972329 EKT(ph)PPRPQGQRPEPENR ddPTM_HeLa_A486_30min_R1 4 EKTPPRPQGQRPEPENR 17 3 A9X3U0;Q96GF1 A9X3U0 RNF185 E3 ubiquitin-protein ligase RNF185 1 0 EKT(1)PPRPQGQRPEPENR;EKT(1)PPRPQGQRPEPENR;EKT(1)PPRPQGQRPEPENR;EKT(1)PPRPQGQRPEPENR ;;; 101.17 0.00047803 969680000 337828 317033 180949 181332 345464 379488 460229 410146 300595 525250 TRUE FALSE FALSE 314148.0017 291910.1505 251017.2988 422150.06 302132.6838 332670.6289 345074.8364 316764.7092 326650.8166 393723.9812 0.797888919 0.741408104 0.63754638 1.072197987 0.767371809 0.844933621 0.876438451 0.804534964 0.829644198 1 18.58682506 -14 0.06862432 1.561411377 0.609196158 0.235091894 0.103449811 507.7370567 2.508740021 46.57729509 6.02676189 1.00E-14 14 -0.952215219 EKT(ph)PS(ph)PKEEDEEPES(ph)PPEKK ddPTM_HeLa_A485_30min_R1 3 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 EKT(1)PS(1)PKEEDEEPES(1)PPEKK;EKT(1)PS(1)PKEEDEEPES(1)PPEKK;EKT(1)PS(1)PKEEDEEPES(1)PPEKK ;; 143.92 1.46E-09 7667600000 2640110 1274900 856860 14822300 3549550 2092520 6909400 3918550 1109930 21003200 TRUE FALSE FALSE 3227393.361 1423988.465 1173848.171 15632004.72 3196144.339 2202081.112 5433150.245 2957519.468 1332682.77 15767488.78 0.204686581 0.090311684 0.074447376 0.991407379 0.202704716 0.139659596 0.3445793 0.187570736 0.084520927 1 23.91044957 -10.26866674 3.600347528 1.001689306 0.264421931 0.427835579 0.2574007 253962443.1 405298402 4773206.004 0.06520303 5.39E-11 10.26866674 -0.737267374 EKT(ph)PS(ph)PKEEDEEPES(ph)PPEKK ddPTM_HeLa_A486_30min_R1 5 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 EKT(1)PS(1)PKEEDEEPES(1)PPEKK;EKT(1)PS(1)PKEEDEEPES(1)PPEKK;EKT(1)PS(1)PKEEDEEPES(1)PPEKK;EKT(1)PS(1)PKEEDEEPES(1)PPEKK;EKT(1)PS(1)PKEEDEEPES(1)PPEKK ;;;; 142.22 1.61E-09 10301090000 4021270 3924580 753392 21071490 2403130 8191630 16781730 13451980 2433340 31312330 TRUE FALSE FALSE 3739399.739 3613581.988 1045125.559 49055493.61 2101707.027 7181029.977 12582763.65 10389257.81 2644263.87 23471518.76 0.15931648 0.153956036 0.044527394 2.090000827 0.089542865 0.305946541 0.536086471 0.442632533 0.112658405 1 24.48440786 -11.37697067 2.162763454 4.563034587 0.454902815 0.078805851 0.574407724 31450899.64 3179116.842 548291975.4 0.147351643 4.20E-12 11.37697067 -4.108131772 EKT(ph)PSEDKLSVK ddPTM_HeLa_A485_30min_R1 2 EKTPSEDKLSVK 12 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 EKT(0.892)PS(0.107)EDKLSVK;EKT(0.877)PS(0.123)EDKLSVK ; 106.19 0.00053265 898030000 1580060 773920 388510 3025900 1227980 1227620 2570200 2205300 852650 3768900 TRUE FALSE FALSE 1931538.896 864423.2118 532236.0162 3191197.255 1105718 1291896.285 2021055.773 1664446.717 1023769.034 2829382.591 0.682671513 0.305516551 0.188110303 1.127877603 0.390798333 0.456600068 0.714309821 0.588272057 0.361834782 1 21.43205584 -10.98751776 2.491735201 1.432023792 0.535866406 0.233574528 0.252631684 21864270.44 9495589.526 54314366.04 0.061955952 1.03E-11 10.98751776 -0.896157386 EKT(ph)PSEDKLSVK ddPTM_HeLa_A486_30min_R1 1 EKTPSEDKLSVK 12 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 EKT(0.5)PS(0.5)EDKLSVK 109.36 0.0022016 224670000 242220 174310 49723 137030 129550 252600 336650 295850 131520 472700 TRUE FALSE FALSE 225241.6288 160497.0408 68977.07723 319012.7651 113300.631 221436.7802 252416.6093 228491.4134 142920.2595 354332.8432 0.635678101 0.452955586 0.194667467 0.900319491 0.319757632 0.624940037 0.712371472 0.64484966 0.403350302 1 18.43474567 -14 0.224598652 3.342532414 0.491119338 0.321025268 0.19648787 185.5818121 1.858346205 197.3895937 0.352260237 1.00E-14 14 -2.851413076 EKT(ph)PSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_A485_30min_R1 3 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 EKT(0.908)PS(0.092)PKEEDEEPES(1)PPEKK;EKT(0.971)PS(0.029)PKEEDEEPES(1)PPEKK;EKT(0.677)PS(0.323)PKEEDEEPES(1)PPEKK ;; 158.1 1.82E-09 2069130000 673770 277125 192762 3001530 803970 536623 1723230 1247470 350247 4328980 TRUE FALSE FALSE 823647.812 309532.3581 264072.6853 3165495.984 723923.9239 564719.7505 1355047.833 941526.0265 420538.3602 3249844.955 0.253442187 0.095245269 0.08125701 0.974045232 0.22275645 0.173768213 0.416957686 0.289714137 0.129402592 1 21.63193946 -10.65710441 2.840893054 1.074307792 0.298926774 0.423935117 0.247172264 107608995.5 102404862.2 58386243.12 0.067725304 2.20E-11 10.65710441 -0.775381019 EKT(ph)PSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_A486_30min_R1 4 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 EKT(0.866)PS(0.134)PKEEDEEPES(1)PPEKK;EKT(0.71)PS(0.293)PKEEDEEPES(0.997)PPEKK;EKT(0.927)PS(0.073)PKEEDEEPES(1)PPEKK;EKT(0.834)PS(0.166)PKEEDEEPES(1)PPEKK ;;; 132.12 2.69E-06 4691820000 782656 693857 157479 2478520 585623 1631100 3188550 2546500 545053 3690450 TRUE FALSE FALSE 727795.856 638873.2443 218459.0862 5770119.817 512168.7026 1429871.466 2390741.065 1966717.54 592298.6329 2766337.299 0.263090064 0.230945534 0.078970517 2.085833792 0.185143259 0.516882546 0.864226161 0.710946398 0.214109333 1 21.39954564 EKTATCHSSS(ph)SPPIDAASAEPYGFR ddPTM_HeLa_A486_30min_R1 1 EKTATCHSSSSPPIDAASAEPYGFR 25 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EKTATCHS(0.006)S(0.04)S(0.552)S(0.401)PPIDAASAEPYGFR 106.6 0.00021572 290090000 121650 96221 97065 13097 151500 80365 95866 86397 90222 41952 TRUE FALSE FALSE 113122.9632 88596.09753 134651.1675 30490.47789 132497.4573 70450.38339 71879.31283 66726.28913 98042.5156 31446.94614 3.597263871 2.817319594 4.281851945 0.969584702 4.213364844 2.240293321 2.285732691 2.121868649 3.117711818 1 14.9406323 -8.506195819 0.141604531 3.33E-14 4.087537868 0.29544611 0.933739598 15.70190136 1.054596601 18.04861823 9.499376885 3.12E-09 8.506195819 4.087537868 EKTDDT(ph)S(ph)GEDNDEKEAVASK ddPTM_HeLa_A485_30min_R1 1 EKTDDTSGEDNDEKEAVASK 20 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 EKT(0.008)DDT(0.993)S(0.999)GEDNDEKEAVASK 95.319 0.00032958 194750000 251040 127860 61198 591660 190900 201850 451620 370060 135040 807590 TRUE FALSE FALSE 306882.9819 142812.1148 83837.68686 623980.8876 171893.3257 212418.5539 355127.6976 279302.2048 162141.2893 606272.6756 0.5061798 0.235557564 0.138283796 1.029208329 0.283524778 0.350368015 0.585755736 0.460687437 0.267439546 1 19.20960728 -10.60347876 2.983810538 1.037309848 0.431011784 0.341253293 0.238163686 290737309.6 310372893.6 85123658.27 0.058038774 2.49E-11 10.60347876 -0.606298064 EKTDDT(ph)S(ph)GEDNDEKEAVASK ddPTM_HeLa_A486_30min_R1 1 EKTDDTSGEDNDEKEAVASK 20 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 EKTDDT(1)S(1)GEDNDEKEAVASK 164.96 1.19E-12 306850000 234550 188120 58778 275170 134500 295900 422030 361540 147330 652730 TRUE FALSE FALSE 218109.2562 173212.6861 81538.41573 640609.6663 117629.7558 259394.8665 316433.6302 279225.2344 160100.683 489282.1594 0.445773981 0.354013901 0.166649068 1.309284743 0.240412927 0.530153944 0.646730366 0.570683457 0.327215452 1 18.90030715 -11.18021515 2.364256422 2.28779492 0.517373004 0.190716936 0.302415211 14438536.1 3274637.392 99512673.48 0.073740161 6.60E-12 11.18021515 -1.770421916 EKTMS(ph)SDDEDCSAK ddPTM_HeLa_A486_30min_R1 1 EKTMSSDDEDCSAK 14 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 0 EKT(0.015)MS(0.668)S(0.317)DDEDCSAK 115.98 8.04E-05 179170000 325490 300710 149900 142340 346840 353510 395310 412410 246720 410370 TRUE FALSE FALSE 302674.8318 276880.6444 207945.2945 331374.7135 303336.093 309897.5304 296399.2568 318513.2458 268105.8882 307610.6809 0.983954234 0.900100879 0.676001541 1.0772536 0.986103903 1.007434233 0.963553203 1.035442738 0.871575354 1 18.23074607 -5.293204759 24.99229283 0.992359291 0.858026903 0.346571257 0.086929701 725.349663 570687.4014 0.024266975 0.035997625 5.09E-06 5.293204759 -0.134332388 EKTPAT(ph)TPEAR ddPTM_HeLa_A485_30min_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 EKT(0.106)PAT(0.447)T(0.447)PEAR 70.373 0.015827 239980000 188840 225770 180040 185150 259970 196200 253420 294290 181490 233650 TRUE FALSE FALSE 230846.8065 252171.8376 246644.2881 195264.2757 234086.474 206472.7286 199274.7467 222114.9161 217913.3783 175405.355 1.316076163 1.437651875 1.406138872 1.1132173 1.334545767 1.177117589 1.136081317 1.266294955 1.242341651 1 17.42033327 -1.000000099 0.050380969 0.555513267 2.537754585 0.537852436 0.088749525 387.6404611 1.476973007 13.61679243 59.62456863 0.099999977 1.000000099 1.982241318 EKTPAT(ph)TPEAR ddPTM_HeLa_A486_30min_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 EKT(0.113)PAT(0.73)T(0.157)PEAR 113.25 0.00052041 277340000 527010 451300 295650 188320 411170 414800 542140 492260 343460 586320 TRUE FALSE FALSE 490069.3205 415537.3444 410133.5978 438418.4772 359597.2246 363626.1934 406490.8378 380183.144 373231.3893 439501.6557 1.115056824 0.9454739 0.933178732 0.997535439 0.818193106 0.827360236 0.924890345 0.865032336 0.849214979 1 18.74550907 -1 0.689900062 0.883072987 27.36522556 0.534811659 0.060123736 205.348135 1.134097474 0.023759508 8372.888031 0.1 1 26.48215257 EKTPATT(ph)PEAR ddPTM_HeLa_A485_30min_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 EKT(0.051)PAT(0.416)T(0.533)PEAR 104.9 0.00089735 429150000 428200 505680 352990 430120 508520 449310 547300 705250 397100 556300 TRUE FALSE FALSE 523451.6127 564814.8772 483575.6901 453616.3665 457889.9633 472835.1768 430364.884 532286.3317 476794.3276 417624.6479 1.253402105 1.352446222 1.15791942 1.086181979 1.096415084 1.132201318 1.030506427 1.274556792 1.141681483 1 18.67184734 -4.878701937 5.157672392 1.117848276 1.301333424 0.519066624 0.073162196 0.15738488 6.382371745 0.019083126 0.041553762 1.32E-05 4.878701937 0.183485148 EKTPS(ph)PK ddPTM_HeLa_A485_30min_R1 4 EKTPSPK 7 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKT(0.034)PS(0.966)PK;EKT(0.296)PS(0.704)PK;EKT(0.167)PS(0.833)PK;EKT(0.095)PS(0.905)PK ;;; 77.379 0.0072439 1891100000 3536220 2422230 599840 5287000 726740 3350760 3022350 4397220 1545570 5258500 TRUE FALSE FALSE 4322839.939 2705488.728 821745.7774 5575815.423 654383.2139 3526200.612 2376600.232 3318794.9 1855751.722 3947652.726 1.095040582 0.685341117 0.208160604 1.412438178 0.165765142 0.893239821 0.602028698 0.840700824 0.470089912 1 21.91256365 -10.13610146 4.65015505 1.000024686 0.703708501 0.055173861 0.361985101 78867087.96 171909289.6 14308.24156 0.080863415 7.31E-11 10.13610146 -0.296316186 EKTPS(ph)PK ddPTM_HeLa_A486_30min_R1 1 EKTPSPK 7 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKT(0.059)PS(0.941)PK 77.379 0.0072439 289980000 541920 166150 100610 262210 83300 750870 363830 256600 377370 1473800 TRUE FALSE FALSE 503934.2065 152983.6689 139568.8864 610438.1314 72851.73726 658235.2937 272795.8858 198177.7815 410080.7354 1104750.887 0.456151891 0.138477978 0.126335166 0.552557267 0.065944041 0.595822372 0.246929773 0.17938685 0.371197471 1 20.07528966 -8.042538514 21.22275074 1.000000002 0.292545806 0.592260758 0.174340641 785.79747 392040.0819 0.15963344 0.041217171 9.07E-09 8.042538514 -0.707454196 EKTPS(ph)PKEEDEEPES(ph)PPEKK ddPTM_HeLa_A485_30min_R1 2 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 EKT(0.007)PS(0.993)PKEEDEEPES(1)PPEKK;EKT(0.423)PS(0.577)PKEEDEEPES(1)PPEKK ; 116.24 8.72E-06 640810000 176371 90433 76447 984720 269870 201487 546930 391580 139228 1413140 TRUE FALSE FALSE 215604.1205 101008.3527 104727.9265 1038512.76 243000.7952 212036.5478 430073.9375 295544.391 167169.7825 1060870.205 0.20323327 0.095212734 0.098718888 0.978925372 0.229057989 0.199870396 0.40539732 0.278586758 0.157577979 1 20.01681673 -10.87890016 2.479420926 1.35016908 0.300750336 0.427641759 0.244898038 28880415.62 16409008.09 59346445.26 0.064363658 1.32E-11 10.87890016 -1.049418744 EKTPSPKEEDEEPES(ph)PPEK ddPTM_HeLa_A485_30min_R1 1 EKTPSPKEEDEEPESPPEK 19 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKTPSPKEEDEEPES(1)PPEK 128.01 2.08E-06 1856800000 258560 121520 119910 809680 445450 303480 755700 703020 266760 1295000 TRUE FALSE FALSE 316075.78 135730.7069 164269.6989 853910.7682 401099.4339 319369.7435 594238.5215 530603.2427 320296.2851 972180.3327 0.325120525 0.139614743 0.168970399 0.878346063 0.412577194 0.328508748 0.611243101 0.545786851 0.329461803 1 19.89086442 -14 0.108130585 2.741412593 0.095608227 0.443279354 0.202561348 171.6442197 1.237403394 67.37848026 2.82350209 1.00E-14 14 -2.645804366 EKTPSPKEEDEEPES(ph)PPEK ddPTM_HeLa_A486_30min_R1 4 EKTPSPKEEDEEPESPPEK 19 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKTPSPKEEDEEPES(1)PPEK;EKTPSPKEEDEEPES(1)PPEK;EKTPSPKEEDEEPES(1)PPEK;EKTPSPKEEDEEPES(1)PPEK ;;; 132.26 1.42E-06 6823600000 1030840 937570 315680 1280800 1103370 1820500 2882150 2537160 862140 2548970 TRUE FALSE FALSE 958583.4393 863273.5386 437919.7502 2981767.128 964975.0461 1595905.219 2161005.586 1959504.054 936870.9894 1910691.321 0.501694559 0.451812142 0.2291944 1.560569777 0.505039739 0.835250154 1.131007171 1.025547158 0.490330897 1 20.86566329 -5.211321121 24.99995763 0.922504601 0.399991366 0.411395783 0.296325772 368.7685768 183948.2573 0.077858069 0.134853947 6.15E-06 5.211321121 -0.522513235 EKTPSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_A485_30min_R1 4 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK ;;; 150.94 1.25E-09 59105200000 4352650 1551500 1137442 14992900 6098070 4670000 14574400 11892930 3608570 23361100 TRUE FALSE FALSE 5320881.976 1732934.429 1558229.129 15811924.16 5490924.739 4914513.979 11460460.38 8976170.27 4332776.899 17537607.7 0.303398392 0.098812475 0.088850723 0.901600973 0.313094285 0.280227159 0.653479116 0.5118241 0.247056325 1 24.06394863 -14 0.119190197 2.89062779 0.09454957 0.394709985 0.235292043 169.0137797 1.306704573 78.12717654 2.402830669 1.00E-14 14 -2.79607822 EKTPSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_A486_30min_R1 9 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK;EKTPSPKEEDEEPES(1)PPEKK ;;;;;;;; 210.22 6.12E-26 93626490000 8298670 6948820 1774786 13499040 6925190 15265350 25182950 22578110 5820270 25501180 TRUE FALSE FALSE 7716976.087 6398170.196 2462030.67 31426447.32 6056568.095 13382066.32 18881909.55 17437567.23 6324775.69 19115518.54 0.403702158 0.334710784 0.128797483 1.644027979 0.316840377 0.700062951 0.987779092 0.912220466 0.330871259 1 24.188241 EKTVTDVSTIDGNAAELVSGRPVSDTTEPSS(ph)PEGK ddPTM_HeLa_A485_30min_R1 2 EKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 35 2 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 EKTVTDVSTIDGNAAELVSGRPVSDTTEPS(0.137)S(0.863)PEGK;EKTVTDVSTIDGNAAELVSGRPVSDTTEPS(0.208)S(0.792)PEGK ; 257.08 9.73E-65 480920000 92606 93003 44023 102272 63846 105792 121526 118760 55989 136959 TRUE FALSE FALSE 113205.8852 103878.8918 60308.93965 107858.8604 57489.26806 111331.1055 95560.97732 89633.92379 67225.47874 102817.6418 1.101035612 1.010321672 0.586562175 1.049030677 0.55913817 1.082801585 0.92942199 0.87177572 0.653832139 1 16.6497283 -4.538535586 24.97889223 0.842891289 1.0783573 0.196026509 0.177632636 295.952607 472161.622 0.042677921 0.112990196 2.89E-05 4.538535586 0.23546601 EKTVTDVSTIDGNAAELVSGRPVSDTTEPSS(ph)PEGK ddPTM_HeLa_A486_30min_R1 1 EKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 35 2 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 EKTVTDVSTIDGNAAELVSGRPVS(0.001)DT(0.002)T(0.002)EPS(0.254)S(0.74)PEGK 196.34 1.33E-22 290710000 113330 79061 23275 34307 46647 73491 80454 83629 55116 157570 TRUE FALSE FALSE 105386.1522 72795.91842 32287.70333 79868.42978 40796.09829 64424.42762 60323.55824 64588.50231 59893.49926 118113.4464 0.892245172 0.616322025 0.273361792 0.676200993 0.345397578 0.545445329 0.510725579 0.546834457 0.507084511 1 16.84981369 -10.1098648 5.076171857 1.000014034 0.536915884 0.415610756 0.161199123 2.51E-05 4.41E-06 0.153240037 0.037165043 7.76E-11 10.1098648 -0.46309815 EKVAS(ph)DTEEADR ddPTM_HeLa_A485_30min_R1 1 EKVASDTEEADR 12 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 EKVAS(0.927)DT(0.073)EEADR 131.61 0.00034712 514650000 253620 272890 178790 383830 268610 255440 365740 322520 205660 506160 TRUE FALSE FALSE 310036.894 304802.1117 244931.8611 404797.661 241866.2453 268814.4434 287596.6612 243421.4643 246934.0756 379983.6272 0.815921718 0.802145382 0.644585302 1.065302903 0.636517544 0.707436911 0.756865929 0.640610402 0.649854515 1 18.53557773 -4.550379264 24.9751597 0.751899498 0.812478019 0.012271582 0.144712395 858.1810294 779371.9766 0.03583155 0.094805369 2.82E-05 4.550379264 0.060578521 EKVAS(ph)DTEEADRTSSK ddPTM_HeLa_A486_30min_R1 1 EKVASDTEEADRTSSK 16 2 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 EKVAS(1)DTEEADRTSSK 117.74 4.27E-05 303320000 122420 100030 49537 100830 119800 137710 196600 180410 77682 229080 TRUE FALSE FALSE 113838.9902 92103.2585 68719.05305 234737.3357 104773.5669 120720.7403 147408.6006 139334.5813 84415.53831 171716.8769 0.662945846 0.536366956 0.400188114 1.367002125 0.610152996 0.703021989 0.858439795 0.811420425 0.491597214 1 17.38967231 EKVIET(ph)PENDFK ddPTM_HeLa_A485_30min_R1 2 EKVIETPENDFK 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 EKVIET(1)PENDFK;EKVIET(1)PENDFK ; 162.81 3.30E-10 981370000 1979560 1172560 865170 3313900 1936760 1824730 3001100 2310000 1533200 4649800 TRUE FALSE FALSE 2419906.293 1309680.692 1185232.386 3494929.966 1743929.374 1920270.041 2359890.468 1743468.878 1840899.177 3490690.433 0.693245746 0.375192449 0.339540961 1.001214525 0.499594395 0.550111813 0.676052636 0.499462474 0.527373943 1 21.73508099 -9.98934243 4.299794445 1.000018581 0.571368708 0.341522363 0.177628502 237568818.1 544313466.4 69956.9301 0.044297808 1.02E-10 9.98934243 -0.428649873 EKVIET(ph)PENDFK ddPTM_HeLa_A486_30min_R1 2 EKVIETPENDFK 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 EKVIET(1)PENDFK;EKVIET(1)PENDFK ; 133.86 2.37E-05 1106150000 3915500 3307100 1267150 2038650 2796400 4311200 5683800 5057400 2659500 6253300 TRUE FALSE FALSE 3641043.67 3045033.352 1757824.415 4746080.228 2445649.437 3779327.977 4261653.123 3905940.422 2890027.601 4687432.978 0.776767089 0.649616403 0.375007904 1.012511592 0.521746006 0.806268163 0.909165666 0.833279204 0.616548037 1 22.16036663 -6.489914106 22.9342708 0.830406572 0.668604767 0.178691157 0.178551621 437.0347574 304055.4938 0.061414785 0.054102924 3.24E-07 6.489914106 -0.161801805 EKVIET(ph)PENDFKHHR ddPTM_HeLa_A485_30min_R1 1 EKVIETPENDFKHHR 15 2 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 EKVIET(1)PENDFKHHR 186.56 4.18E-18 411740000 360010 572800 269860 229930 509930 742980 1062100 1770400 353730 352460 TRUE FALSE FALSE 440092.9825 639783.9773 369692.4438 242490.4937 459159.5787 781881.2839 835173.6584 1336206.624 424720.3664 264598.2085 1.663250046 2.417945234 1.397184228 0.91644798 1.735308721 2.954975728 3.156384403 5.049945846 1.605152086 1 18.01344377 -6.255782411 4.800702324 3.041322201 1.607962172 0.195243146 1.07062128 0.250239273 16.91732187 0.363764097 0.342969784 5.55E-07 6.255782411 -1.433360028 EKVIET(ph)PENDFKHHR ddPTM_HeLa_A486_30min_R1 2 EKVIETPENDFKHHR 15 2 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 EKVIET(1)PENDFKHHR;EKVIET(1)PENDFKHHR ; 160.67 4.90E-12 754320000 1258080 608180 429180 444780 1008230 661640 1134370 1190010 426710 1467260 TRUE FALSE FALSE 1169895.089 559985.6018 595369.9898 1035470.318 881768.392 580013.5839 850538.6279 919070.7007 463697.5664 1099848.546 1.063687444 0.509147922 0.541319977 0.941466279 0.801718014 0.527357686 0.77332341 0.835633874 0.421601291 1 20.06887344 -10.27856913 4.460630175 1.000159748 0.711051025 0.159112445 0.198030492 0.000332958 5.39E-05 0.185359651 0.044929272 5.27E-11 10.27856913 -0.289108723 EKVS(ph)SIDLEIDSLSSLLDDMTK ddPTM_HeLa_A485_30min_R1 2 EKVSSIDLEIDSLSSLLDDMTK 22 1 Q15942;H7C3R3;C9IZ41 Q15942 ZYX Zyxin 1 0 EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK ; 164.62 1.12E-13 181877000 165374 93036 52832 211540 140976 109388 211120 154870 95801 318270 TRUE FALSE FALSE 202160.8758 103915.7509 72376.75532 223095.8946 126939.9344 115115.3865 166012.4873 116887.8897 115027.382 238931.1463 0.84610516 0.434919233 0.30291888 0.933724623 0.53128249 0.481793137 0.694813087 0.489211605 0.481424811 1 17.86623541 -10.04719807 4.907945456 1.000009013 0.572271828 0.322603881 0.183598645 241734979.1 18.70310414 24621.95153 0.043477062 8.97E-11 10.04719807 -0.427737185 EKVS(ph)SIDLEIDSLSSLLDDMTK ddPTM_HeLa_A486_30min_R1 5 EKVSSIDLEIDSLSSLLDDMTK 22 1 Q15942;H7C3R3;C9IZ41 Q15942 ZYX Zyxin 1 0 EKVS(0.662)S(0.338)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTK;EKVS(0.494)S(0.494)IDLEIDS(0.01)LS(0.001)S(0.002)LLDDMTK ;;;; 312.29 3.86E-102 1327400000 572675.7 492374.6 209632.2 582600.2 445040 672187.9 974108.2 795243.8 375172.1 880342.3 TRUE FALSE FALSE 532534.0907 453357.0435 290807.402 1356322.709 389218.9334 589260.1912 730376.0253 614184.1468 407692.3197 659898.858 0.806993503 0.687009892 0.440684809 2.05534938 0.589816043 0.892955313 1.106799953 0.93072467 0.617810313 1 19.3318854 EKVS(ph)SIDLEIDSLSSLLDDMTKNDPFK ddPTM_HeLa_A485_30min_R1 1 EKVSSIDLEIDSLSSLLDDMTKNDPFK 27 2 Q15942;H7C3R3 Q15942 ZYX Zyxin 1 0 EKVS(0.5)S(0.5)IDLEIDSLSSLLDDMTKNDPFK 75.261 0.0094995 46958000 10017 9052.8 4769.8 18787 12092 16594 35223 41292 6542 21639 TRUE FALSE FALSE 12245.24709 10111.44621 6534.347508 19813.28624 10888.07802 17462.83618 27697.3183 31165.07226 7854.919393 16244.79554 0.753795089 0.622442196 0.402242521 1.219669783 0.670250235 1.074980362 1.704996424 1.918465036 0.483534519 1 13.98768996 -6.481188552 4.587466729 1.359809362 0.741940304 0.271574699 0.411814439 0.250679248 11.98902095 0.152320564 0.128297967 3.30E-07 6.481188552 -0.617869058 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEET(ph)SPVR ddPTM_HeLa_A486_30min_R1 1 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVR 36 1 Q676U5-3;Q676U5;E7EVC7;Q676U5-4;Q676U5-2;C9JAY7;C9J1B2;Q676U5-5;C9JK97 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEET(0.938)S(0.062)PVR 374.28 2.43E-171 239690000 165100 156570 131990 23996 242740 165600 227680 233350 138260 142450 TRUE FALSE FALSE 153527.3426 144162.823 183100.0628 55863.90069 212293.2857 145169.9557 170712.0558 180221.299 150244.4881 106779.5928 1.437796666 1.350097141 1.714747715 0.523170198 1.98814474 1.359529025 1.598732973 1.687787847 1.407052454 1 16.70427643 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVR 36 1 Q676U5-3;Q676U5;E7EVC7;Q676U5-4;Q676U5-2;C9JAY7;C9J1B2;Q676U5-5;C9JK97 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEET(0.206)S(0.794)PVR 339.05 7.63E-130 205240000 173980 146540 122510 21899 249210 165100 228420 224580 140790 142040 TRUE FALSE FALSE 161784.9004 134927.6367 169949.1529 50981.97871 217951.758 144731.6406 171266.9 173448.0365 152993.7906 106472.2595 1.519502838 1.267256254 1.596182459 0.478828748 2.047028579 1.359336613 1.608558895 1.629044386 1.436935699 1 16.70011807 ELAILLGMLDPAEKDEK ddPTM_HeLa_A486_30min_R1 2 ELAILLGMLDPAEKDEK 17 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 165.02 7.74E-11 3849300 20325.8 18527.4 6704.6 15164.2 16443.5 25957.3 34157 27691.3 16011.3 42676 FALSE FALSE TRUE 18901.06638 17059.22135 9300.800675 35303.02396 14381.0029 22754.95224 25610.55732 21386.59549 17399.17238 31989.65183 0.590849394 0.533273117 0.290744042 1.103576374 0.449551717 0.711322285 0.800588811 0.668547304 0.543900023 1 14.96531767 -14 0.115906889 2.082510188 0.460055187 0.224448829 0.20633223 250.1759426 1.896801719 65.0175196 2.191410022 1.00E-14 14 -1.622455 ELAPAWEDT(ph)SPEQDNR ddPTM_HeLa_A485_30min_R1 1 ELAPAWEDTSPEQDNR 16 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.556)S(0.444)PEQDNR 75.764 0.029637 234910000 188180 215990 243370 193240 226870 179030 208140 171050 203120 239810 TRUE FALSE FALSE 230039.9918 241248.1516 333402.6905 203796.2119 204282.0262 188403.734 163669.1887 129099.7193 243884.3209 180029.7804 1.277788549 1.340045803 1.851930774 1.132013889 1.134712411 1.046514269 0.909122859 0.717102021 1.354688765 1 17.45787605 -5.473899172 9.760244609 1.019170544 1.478346454 0.500369952 0.207200321 0.471405867 91.77521165 0.059074767 0.087271444 3.36E-06 5.473899172 0.459175909 ELAPAWEDT(ph)SPEQDNR ddPTM_HeLa_A486_30min_R1 1 ELAPAWEDTSPEQDNR 16 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.569)S(0.431)PEQDNR 73.722 0.034354 483720000 235140 263490 205090 77142 281710 251150 237030 260210 255210 239510 TRUE FALSE FALSE 218657.9003 242610.0928 284506.3405 179590.4745 246375.305 220165.6665 177722.587 200965.8633 277331.8083 179535.1371 1.217911457 1.35132374 1.584683339 1.000308227 1.372295747 1.226309625 0.989904204 1.119367867 1.544721623 1 17.4539067 -5.264576096 24.99982214 1.186108311 1.381307928 0.203570813 0.185998061 465.4045138 3709311.425 0.051600108 0.080274757 5.44E-06 5.264576096 0.195199617 ELAPAWEDT(ph)SPEQDNRYWR ddPTM_HeLa_A485_30min_R1 1 ELAPAWEDTSPEQDNRYWR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.625)S(0.375)PEQDNRYWR 122.01 1.18E-05 30621000 13252 18935 18397 19030 24854 18900 24961 27430 19540 33670 TRUE FALSE FALSE 16199.86168 21149.28354 25202.81586 20069.56071 22379.44849 19889.57478 19627.87844 20702.74949 23461.49877 25276.68865 0.640901263 0.836711004 0.997077434 0.793994854 0.885378967 0.786874224 0.776520956 0.81904516 0.928187196 1 14.62551986 -13.99999996 0.214966659 1.844685061 0.809031768 0.280601503 0.088450195 221.6569784 2.214933352 80.59322186 0.185344351 1.00E-14 13.99999996 -1.035653293 ELAPAWEDT(ph)SPEQDNRYWR ddPTM_HeLa_A486_30min_R1 1 ELAPAWEDTSPEQDNRYWR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.559)S(0.441)PEQDNRYWR 69.398 0.0068649 215090000 23039 19511 20321 6927.7 31219 18870 24219 25937 18836 20928 TRUE FALSE FALSE 21424.08507 17964.8773 28189.83542 16128.03571 27303.22191 16542.01126 18159.15004 20031.7113 20468.71965 15687.49258 1.365679376 1.145172003 1.79696247 1.028082444 1.740445248 1.054471336 1.157555928 1.27692244 1.304779559 1 13.93732716 ELAPAWEDTS(ph)PEQDNR ddPTM_HeLa_A486_30min_R1 1 ELAPAWEDTSPEQDNR 16 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.116)S(0.884)PEQDNR 93.326 0.00087803 394010000 167230 179810 152640 64143 197090 181170 167950 185870 148340 184030 TRUE FALSE FALSE 155508.0406 165561.2007 211746.2958 149328.1456 172369.1344 158819.0874 125927.1336 143551.4585 161198.2306 137947.6902 1.127297169 1.20017378 1.534975291 1.08249834 1.24952534 1.15129936 0.912861487 1.040622415 1.168546066 1 17.07376177 -6.534579874 5.761771365 1.032569744 1.241017805 0.375368766 0.126611915 0.182655811 21.40505031 0.048917091 0.039024442 2.92E-07 6.534579874 0.208448061 ELAPAWEDTS(ph)PEQDNRYWR ddPTM_HeLa_A485_30min_R1 2 ELAPAWEDTSPEQDNRYWR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.063)S(0.937)PEQDNRYWR;ELAPAWEDT(0.026)S(0.974)PEQDNRYWR ; 181.87 2.20E-18 401680000 82165 148469 147482 76799 143914 161441 165770 219724 117615 106457 TRUE FALSE FALSE 100442.3208 165831.158 202041.729 80994.3349 129585.4168 169893.8011 130351.8853 165836.3445 141219.2517 79919.2291 1.256797919 2.074984455 2.528074048 1.013452405 1.62145479 2.125818818 1.631045329 2.075049351 1.767024698 1 16.28625505 -10.29271608 4.726396805 0.999634768 1.804440725 0.239910601 0.41998535 0.001609989 0.000240929 0.405030044 0.098191219 5.10E-11 10.29271608 0.804805956 ELAPAWEDTS(ph)PEQDNRYWR ddPTM_HeLa_A486_30min_R1 3 ELAPAWEDTSPEQDNRYWR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.034)S(0.966)PEQDNRYWR;ELAPAWEDT(0.163)S(0.837)PEQDNRYWR;ELAPAWEDT(0.449)S(0.551)PEQDNRYWR ;; 137.64 6.47E-07 254570000 109268 113552 93894 52522 150636 114482 155317 142859 97945 156988 TRUE FALSE FALSE 101608.8775 104553.726 130252.2714 122273.8703 131741.8283 100358.3748 116455.0438 110333.1243 106434.9515 117677.183 0.863454366 0.888479171 1.106860889 1.03906184 1.119518881 0.852827815 0.989614476 0.937591481 0.904465494 1 16.84447509 -6.278565858 24.96722696 0.936293999 1.00480709 0.131451819 0.085523574 1878.33185 2738250.996 0.032096598 0.028371956 5.27E-07 6.278565858 0.068513091 ELAQPSGGHLPQAS(ph)PISVYLFPGER ddPTM_HeLa_A485_30min_R1 2 ELAQPSGGHLPQASPISVYLFPGER 25 0 H7C3T2;Q2TAZ0;Q2TAZ0-3 H7C3T2 ATG2A Autophagy-related protein 2 homolog A 1 0 ELAQPSGGHLPQAS(0.969)PIS(0.031)VYLFPGER;ELAQPSGGHLPQAS(1)PISVYLFPGER ; 200.66 1.73E-28 135879000 84486 109011 115352 42990 119546 82551 90768 111685 78542 84020 TRUE FALSE FALSE 103279.6192 121758.8882 158025.505 45338.43484 107643.5805 86873.24271 71374.67529 84294.07863 94304.65897 63075.36027 1.637400385 1.930371664 2.505344469 0.718797874 1.706586851 1.37729285 1.131577766 1.33640265 1.495110905 1 15.94478892 -5.257796696 24.99888225 1.285381954 2.014972096 0.54258101 0.323844064 251.6535386 1727031.949 0.087023025 0.143493805 5.52E-06 5.257796696 0.729590142 ELAQPSGGHLPQAS(ph)PISVYLFPGER ddPTM_HeLa_A486_30min_R1 2 ELAQPSGGHLPQASPISVYLFPGER 25 0 H7C3T2;Q2TAZ0;Q2TAZ0-3 H7C3T2 ATG2A Autophagy-related protein 2 homolog A 1 0 ELAQPSGGHLPQAS(0.996)PIS(0.004)VYLFPGER;ELAQPSGGHLPQAS(0.999)PIS(0.001)VYLFPGER ; 196.75 2.83E-22 131727000 99740 100665 89426 10249.6 124003 69818 85153 86457 76021 53589 TRUE FALSE FALSE 92748.74106 92687.93878 124054.1421 23861.58679 108449.3875 61204.56502 63846.81874 66772.62844 82610.56149 40169.96559 2.308907655 2.30739403 3.088231226 0.594015614 2.699763016 1.523639966 1.589416814 1.662252567 2.056525572 1 15.29382961 -1 0.091321795 0.565818205 5.898707379 0.246233832 0.627060278 218.3842128 1.434450275 10.75631812 145.8607909 0.1 1 5.332889173 ELASALK ddPTM_HeLa_A485_30min_R1 1 ELASALK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 113.7 0.016682 46851000 133120 85730 70129 306330 114180 157030 187950 173130 117930 344870 FALSE FALSE TRUE 162732.0847 95755.37775 96072.63541 323064.0322 102811.8383 165251.848 147792.9471 130669.596 141597.4693 258900.2559 0.62855127 0.369854319 0.371079724 1.247832032 0.397109837 0.638283834 0.57084898 0.504710185 0.546919001 1 17.98203687 -10.46690377 3.288348545 1.007307981 0.586037837 0.210116602 0.240732187 132046436.9 170617996.2 8836684.641 0.058872779 3.41E-11 10.46690377 -0.421270144 ELDDDERDVDAS(ph)PTAGLQEAATLAPTRR ddPTM_HeLa_A485_30min_R1 2 ELDDDERDVDASPTAGLQEAATLAPTRR 28 2 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 0 ELDDDERDVDAS(0.727)PT(0.1)AGLQEAAT(0.149)LAPT(0.024)RR;ELDDDERDVDAS(0.802)PT(0.186)AGLQEAAT(0.011)LAPTRR ; 86.936 0.0013671 116297000 38935 48873 43107 32209 48203 45718 46422 62503 47263 57202 TRUE FALSE FALSE 47595.95643 54588.27221 59054.07313 33968.49611 43403.74007 48111.72379 36503.56047 47174.04125 56748.25058 42942.59412 1.108362394 1.271191769 1.37518644 0.791021055 1.010738661 1.120373018 0.850054851 1.098537296 1.321490975 1 15.39012173 -5.242025772 24.99618905 1.027347954 1.253541347 0.319411125 0.149911568 1018.978616 1311994.933 0.041503615 0.071756614 5.73E-06 5.242025772 0.226193393 ELDEEGS(ph)DPPLPGR ddPTM_HeLa_A485_30min_R1 3 ELDEEGSDPPLPGR 14 0 C9JQV0;Q9BRJ6;H7C0T1;H7C2R9 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 0 ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR ;; 162.94 7.30E-12 2926240000 2407820 3089130 2627660 2472350 3541340 2999110 3577920 4331440 2675070 4076660 TRUE FALSE FALSE 2943431.252 3450376.882 3599740.78 2607408.22 3188751.755 3156138.762 2813468.163 3269147.549 3211932.012 3060423.687 0.961772471 1.127418042 1.176223016 0.851976225 1.041931471 1.031275106 0.919306753 1.068200969 1.04950567 1 21.54529996 -5.234170291 24.99106537 0.997804243 1.092365837 0.224699966 0.079651786 1135.570736 1040705.125 0.021494456 0.037217503 5.83E-06 5.234170291 0.094561594 ELDEEGS(ph)DPPLPGR ddPTM_HeLa_A486_30min_R1 2 ELDEEGSDPPLPGR 14 0 C9JQV0;Q9BRJ6;H7C0T1;H7C2R9 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 0 ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR ; 120.87 7.23E-05 2514500000 3239900 3763800 2865700 1262880 4161500 3376500 3852600 4126700 3176100 3686900 TRUE FALSE FALSE 3012799.741 3465542.78 3975375.786 2940048.462 3639525.866 2959941.76 2888638.731 3187140.495 3451406.905 2763676.242 1.09014207 1.253961201 1.438437587 1.063817975 1.316914699 1.071016103 1.045216038 1.153224986 1.24884632 1 21.39815719 -6.273674869 24.82492357 1.109584458 1.235890966 0.231022316 0.117348329 1134.999084 2302826.033 0.041163882 0.036589815 5.33E-07 6.273674869 0.126306508 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(ph)PR ddPTM_HeLa_A485_30min_R1 1 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGTPR 43 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(1)PR 123.02 4.98E-08 718240000 153620 97039 70819 347790 149160 162050 303180 275620 122520 457150 TRUE FALSE FALSE 187792.239 108386.8669 97017.89512 366788.887 134309.1067 170534.6874 238403.1162 208023.7628 147108.6402 343190.9182 0.547194664 0.315820907 0.282693655 1.06876047 0.391353907 0.496909092 0.694666157 0.606145885 0.428649572 1 18.38865185 -14 0.220026515 3.281953468 0.483424185 0.28916094 0.215558603 206.2276567 2.063855862 209.2357362 0.421107439 1.00E-14 14 -2.798529283 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(ph)PR ddPTM_HeLa_A486_30min_R1 1 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGTPR 43 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(1)PR 184.16 1.66E-22 612660000 571550 495740 169390 656910 378700 836720 1171000 961990 378040 1646800 TRUE FALSE FALSE 531487.2965 456455.7569 234982.3444 1529319.678 331199.9148 733493.9935 878003.4144 742965.8771 410808.8116 1234430.561 0.430552607 0.369770298 0.190356875 1.23888676 0.268301778 0.594196236 0.71126189 0.601869316 0.332792159 1 20.23541425 -14 0.243581291 3.617505044 0.492539869 0.191558175 0.284995248 306.5250966 3.054811058 399.9911736 0.434523037 1.00E-14 14 -3.124965175 ELDPSLVSANDS(ph)PSGMQTR ddPTM_HeLa_A485_30min_R1 2 ELDPSLVSANDSPSGMQTR 19 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 ELDPSLVSANDS(0.999)PS(0.001)GMQTR;ELDPSLVS(0.024)ANDS(0.929)PS(0.04)GMQT(0.007)R ; 146.81 2.02E-08 577900000 219460 266850 249920 223147 318430 227200 292260 328040 245990 297330 TRUE FALSE FALSE 268278.1199 298055.7862 342375.808 235336.9556 286725.9911 239095.8407 229816.2635 247587.6757 295357.9366 223211.103 1.201903115 1.335308962 1.533865491 1.054324594 1.284550756 1.07116464 1.029591541 1.109208603 1.323222424 1 17.76804927 -5.278856344 24.83231807 1.12961263 1.354854188 0.424420636 0.123941978 716.7261103 1021874.275 0.034983278 0.052031455 5.26E-06 5.278856344 0.225241557 ELDPSLVSANDS(ph)PSGMQTR ddPTM_HeLa_A486_30min_R1 1 ELDPSLVSANDSPSGMQTR 19 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 ELDPSLVSANDS(0.979)PS(0.018)GMQT(0.003)R 106.36 0.00068305 92811000 82833 105010 94452 30071 124730 81951 103700 97280 76897 99868 TRUE FALSE FALSE 77026.83445 96688.62516 131026.3439 70006.8077 109085.2003 71840.71884 77753.16317 75131.46761 83562.49387 74860.40277 1.028939621 1.291585693 1.750275701 0.935164721 1.457181585 0.959662467 1.038642063 1.003620937 1.116244246 1 16.19191519 -6.274046799 24.6724829 1.024798248 1.298137119 0.287532977 0.211623198 866.2606083 1695250.871 0.073336389 0.065130761 5.32E-07 6.274046799 0.273338871 ELDQDMVT(ph)EDEDDPGSHKR ddPTM_HeLa_A485_30min_R1 3 ELDQDMVTEDEDDPGSHKR 19 1 Q9NRL2;Q9NRL2-2;A0A087WWN7 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR ;; 154.14 7.55E-09 1133420000 922110 880430 592310 977520 835810 847570 1000130 1016240 688510 1358260 TRUE FALSE FALSE 1127230.188 983388.6298 811430.1171 1030919.442 752593.8217 891947.4546 786444.0552 767005.5466 826687.6416 1019670.779 1.105484448 0.964417781 0.795776572 1.011031662 0.738075306 0.874740625 0.771272524 0.752209009 0.810739759 1 19.95967199 -1.000001188 0.653657887 0.820902202 27.56501106 0.428076452 0.092528054 191.4033255 1.218172309 0.036518358 7412.887753 0.099999726 1.000001188 26.74410886 ELDQDMVT(ph)EDEDDPGSHKR ddPTM_HeLa_A486_30min_R1 2 ELDQDMVTEDEDDPGSHKR 19 1 Q9NRL2;Q9NRL2-2;A0A087WWN7 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR ; 222.46 7.99E-35 2292770000 2808700 2939700 1558490 900110 2203700 2800300 2980500 2617800 2392700 3511400 TRUE FALSE FALSE 2611824.634 2706747.466 2161979.066 2095501.569 1927291.397 2454827.457 2234747.375 2021784.086 2600101.163 2632122.585 0.992288372 1.028351598 0.821382362 0.796126131 0.732219468 0.932641767 0.849028609 0.768119273 0.987834373 1 21.32779525 -4.759630569 24.99997313 0.847863964 1.010320037 0.317943981 0.085841108 46.86096835 647624.9898 0.021422517 0.051031831 1.74E-05 4.759630569 0.162456073 ELDVEEAHAAS(ph)T(ph)EEK ddPTM_HeLa_A485_30min_R1 1 ELDVEEAHAASTEEK 15 0 Q96C86 Q96C86 DCPS m7GpppX diphosphatase 2 0 ELDVEEAHAAS(1)T(1)EEK 40.52 0.012131 0 277660 306400 284620 719180 333920 340570 442510 407820 275710 907920 TRUE FALSE FALSE 339424.5091 342230.8147 389912.782 758466.9823 300673.7523 358401.7186 347964.1235 307801.5056 331042.468 681592.253 0.497987628 0.502104907 0.57206164 1.112786976 0.441134345 0.525830094 0.510516547 0.451591849 0.485689892 1 19.37854941 -10.51347787 2.928596438 1.016103759 0.571033469 0.326873275 0.186470914 105389940.6 117402557.2 13582583.14 0.04846124 3.07E-11 10.51347787 -0.445070289 ELEAIFGRPVVDGEEGEPHSIS(ph)PR ddPTM_HeLa_A485_30min_R1 4 ELEAIFGRPVVDGEEGEPHSISPR 24 1 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 ELEAIFGRPVVDGEEGEPHS(0.002)IS(0.998)PR;ELEAIFGRPVVDGEEGEPHS(0.018)IS(0.982)PR;ELEAIFGRPVVDGEEGEPHS(0.001)IS(0.999)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR ;;; 218.16 3.40E-38 5536700000 1344890 1310930 1341870 1516960 1246570 1427970 1615310 1419300 1096280 1847980 TRUE FALSE FALSE 1644056.141 1464231.86 1838283.553 1599827.684 1122457.114 1502736.301 1270185.823 1071214.45 1316293.34 1387312.596 1.185065389 1.055444796 1.325068019 1.153184718 0.80908738 1.083199494 0.915572905 0.772150742 0.948808037 1 20.40386147 -5.677421101 6.972104084 0.91833628 1.184437422 0.604498646 0.102445622 0.152631145 10.55799026 0.030467744 0.03931521 2.10E-06 5.677421101 0.266101141 ELEAIFGRPVVDGEEGEPHSIS(ph)PR ddPTM_HeLa_A486_30min_R1 5 ELEAIFGRPVVDGEEGEPHSISPR 24 1 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 ELEAIFGRPVVDGEEGEPHS(0.007)IS(0.993)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHSIS(1)PR;ELEAIFGRPVVDGEEGEPHS(0.002)IS(0.998)PR ;;;; 233.49 9.86E-40 7054200000 1437198 2229670 1887010 677846 2063070 2128580 2076030 2079230 2143180 2351400 TRUE FALSE FALSE 1336457.842 2052982.829 2617710.808 1578059.744 1804300.523 1865977.441 1556585.336 1605834.718 2328952.568 1762594.135 0.758233456 1.164750743 1.485146669 0.895305228 1.023661935 1.058654062 0.883121818 0.911063237 1.321320956 1 20.74926888 ELEDS(ph)PQENVSVTEIIKPCDDPK ddPTM_HeLa_A485_30min_R1 2 ELEDSPQENVSVTEIIKPCDDPK 23 1 A0A2R8Y534;A0A2R8Y4Q0;Q5F1R6;Q5F1R6-3;Q5F1R6-2 A0A2R8Y534 DNAJC21 DnaJ homolog subfamily C member 21 1 0 ELEDS(0.999)PQENVS(0.001)VTEIIKPCDDPK;ELEDS(0.987)PQENVS(0.013)VT(0.001)EIIKPCDDPK ; 174.15 4.04E-15 531250000 606680 385270 239370 1006170 498320 470690 847460 671460 454550 1336440 TRUE FALSE FALSE 741633.873 430323.9751 327922.924 1061134.519 448705.5111 495334.6006 666393.2479 506783.3822 545774.0156 1003290.103 0.739201823 0.428912808 0.326847562 1.057654726 0.447234065 0.493710243 0.664207935 0.50512148 0.543984251 1 19.93630739 -11.00400029 4.156527275 1.441760747 0.57483275 0.296185835 0.194829422 0.084973782 8.18E-05 0.020097938 0.044783621 9.91E-12 11.00400029 -0.866927997 ELEDS(ph)PQENVSVTEIIKPCDDPK ddPTM_HeLa_A486_30min_R1 2 ELEDSPQENVSVTEIIKPCDDPK 23 1 A0A2R8Y534;A0A2R8Y4Q0;Q5F1R6;Q5F1R6-3;Q5F1R6-2 A0A2R8Y534 DNAJC21 DnaJ homolog subfamily C member 21 1 0 ELEDS(1)PQENVSVTEIIKPCDDPK;ELEDS(0.973)PQENVS(0.024)VT(0.003)EIIKPCDDPK ; 225.56 1.59E-38 911220000 572870 566770 209966 377500 412330 707780 949020 841750 422660 1115800 TRUE FALSE FALSE 532714.7713 521857.0811 291270.4583 878839.0778 360611.7266 620461.2998 711565.1583 650101.9003 459296.5091 836396.4174 0.636916611 0.623935099 0.348244507 1.05074467 0.431149296 0.741826826 0.850751083 0.777265286 0.549137346 1 19.67382736 -14 0.107332949 2.003025265 0.482796467 0.218430107 0.192066882 264.8203251 1.898606848 59.25396301 2.539309615 1.00E-14 14 -1.520228798 ELEEEEENS(ph)DEDELDSHTMVK ddPTM_HeLa_A485_30min_R1 3 ELEEEEENSDEDELDSHTMVK 21 0 A0A087WZ06;Q13188;Q13188-2;E5RFQ9 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 0 ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK ;; 311.58 4.89E-102 3204360000 981818 948391 801499 1236442 1400580 1240380 1643160 1724720 1073306 1715520 TRUE FALSE FALSE 1200220.027 1059297.078 1098006.833 1303985.696 1261133.337 1305324.379 1292085.443 1301729.716 1288708.669 1287872.436 0.931940147 0.822517082 0.852574217 1.012511534 0.979237774 1.013550987 1.003271292 1.010759823 1.000649314 1 20.29655827 -5.261955754 24.99998015 1.002781755 0.864361135 0.837291896 0.027014662 15.78649604 764310.6003 0.007220189 0.011484355 5.47E-06 5.261955754 -0.13842062 ELEEEEENS(ph)DEDELDSHTMVK ddPTM_HeLa_A486_30min_R1 3 ELEEEEENSDEDELDSHTMVK 21 0 A0A087WZ06;Q13188;Q13188-2;E5RFQ9 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 0 ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK;ELEEEEENS(1)DEDELDSHTMVK ;; 357.25 2.52E-128 3253500000 1271900 1256040 879320 579284 1362350 1410080 1569820 1598280 1049730 1581960 TRUE FALSE FALSE 1182746.378 1156506.816 1219816.253 1348602.427 1191471.36 1236118.666 1177034.432 1234386.534 1140721.442 1185826.919 0.9974022 0.975274551 1.02866298 1.13726751 1.004759919 1.042410698 0.992585354 1.040950002 0.961962849 1 20.17746202 -7.756953862 24.99877842 0.98098142 1.027963357 0.156718819 0.043068293 201.7316704 1124344.165 0.032861479 0.011476076 1.75E-08 7.756953862 0.046981936 ELEELS(ph)LEAQGIK ddPTM_HeLa_A485_30min_R1 1 ELEELSLEAQGIK 13 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 ELEELS(1)LEAQGIK 167.55 5.95E-12 31307000 36563 32492 23675 42951 30632 29416 40871 33916 26593 52398 TRUE FALSE FALSE 44696.31321 36291.65676 32433.3677 45297.30437 27582.17052 30956.17627 32138.57696 25598.04782 31929.97117 39336.14291 1.136265783 0.922603338 0.82451825 1.151544128 0.701191537 0.786965218 0.817024105 0.650751343 0.811720947 1 15.26356788 -5.776317485 24.99998147 0.777884996 0.989422611 0.410223352 0.123953137 231.8742992 389621.6424 0.037159432 0.042303379 1.67E-06 5.776317485 0.211537614 ELEELS(ph)LEAQGIK ddPTM_HeLa_A486_30min_R1 1 ELEELSLEAQGIK 13 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 ELEELS(1)LEAQGIK 118.19 0.00014085 14922000 44891 42299 26577 13497 29350 52515 44530 46242 37239 51050 TRUE FALSE FALSE 41744.37272 38947.07319 36868.32616 31421.6981 25668.64932 46036.23323 33388.12301 35713.70606 40466.9065 38266.74772 1.09087851 1.017778502 0.96345596 0.821122776 0.670782098 1.203034906 0.872510077 0.933283025 1.057495317 1 15.22380367 -9.008147382 14.66322288 0.999999999 0.95214679 0.00547204 0.141688496 0 0 0.139036443 0.033721291 9.81E-10 9.008147382 -0.047853209 ELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_A485_30min_R1 2 ELEEVSPETPVVPATTQR 18 0 Q15149 Q15149 PLEC Plectin 1 0 ELEEVS(0.995)PET(0.005)PVVPATTQR;ELEEVS(1)PETPVVPATTQR ; 383.43 3.19E-145 740600000 227749 258804 328049 293673 386425 258835 291557 283582 285384 378420 TRUE FALSE FALSE 278410.9793 289068.8765 449407.9764 309715.6124 347951.1702 272387.2004 229263.4651 214033.0699 342657.9511 284086.8583 0.980020621 1.017536954 1.581938633 1.090214501 1.224805583 0.958816617 0.807018904 0.753407149 1.206173186 1 18.11597257 -6.326215632 5.051329246 0.917291654 1.187454208 0.265815955 0.191951942 0.282264117 14.42879179 0.069992243 0.06195235 4.72E-07 6.326215632 0.270162554 ELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_A486_30min_R1 2 ELEEVSPETPVVPATTQR 18 0 Q15149 Q15149 PLEC Plectin 1 0 ELEEVS(1)PETPVVPATTQR;ELEEVS(1)PETPVVPATTQR ; 290.32 1.73E-78 957060000 734760 1103010 876330 373480 1170730 1031040 1136740 1175410 930610 921370 TRUE FALSE FALSE 683257.1183 1015603.471 1215668.445 869480.3146 1023886.127 903840.7676 852315.6288 907794.802 1011276.024 690652.9549 0.98929153 1.470497539 1.760172654 1.258925063 1.48249004 1.308675741 1.234072225 1.314400808 1.464231807 1 19.39760143 -6.437664966 6.421025902 1.278222684 1.409212649 0.081169126 0.211309862 0.693203743 43.19063704 0.075479904 0.066087073 3.65E-07 6.437664966 0.130989965 ELEEWYAR ddPTM_HeLa_A485_30min_R1 1 ELEEWYAR 8 0 P09496-2;P09496-4;P09496-3;P09496;C9J8P9;P09496-5;F8WF69 P09496-2 CLTA Clathrin light chain A 0 0 98.458 0.0078785 0 43347 58444 58413 48457 68139 52392 60800 58191 52679 60979 FALSE FALSE TRUE 52989.3906 65278.5174 80022.39947 51104.08321 61354.84191 55135.16411 47809.58331 43919.56601 63251.1921 45778.05754 1.157528158 1.425978316 1.748051442 1.11634451 1.340267482 1.204401564 1.044377719 0.959402132 1.381692354 1 15.48236863 -6.044503502 1.275857358 1.098392542 1.412949012 0.294492435 0.191674829 0.54773924 1.847304275 0.086022581 0.093845532 9.03E-07 6.044503502 0.31455647 ELEFYLR ddPTM_HeLa_A485_30min_R1 2 ELEFYLR 7 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 ; ; 161.47 0.0018889 136707000 156528 209140 211350 159159 250570 203773 227580 254730 213040 237390 FALSE FALSE TRUE 191347.1136 233597.1037 289537.16 167853.4532 225622.371 214442.2392 178955.6738 192257.0681 255795.1739 178213.0418 1.073698713 1.31077446 1.62466875 0.941869638 1.266026149 1.203291504 1.004167102 1.078804705 1.435333639 1 17.44324339 -5.279633467 24.99921911 1.139198671 1.333820092 0.20284741 0.184627258 1342.081931 1844057.244 0.051815666 0.077016011 5.25E-06 5.279633467 0.194621421 ELEFYLR ddPTM_HeLa_A486_30min_R1 2 ELEFYLR 7 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 ; ; 151.17 0.0029857 87811000 111147 124991 114795 40431 141952 110407 130020 134622 108750 125530 FALSE FALSE TRUE 103356.1693 115086.258 159246.6983 94125.41127 124147.0565 96786.10688 97487.62079 103971.5094 118176.5376 94096.47094 1.098406436 1.223066676 1.692376948 1.00030756 1.319359326 1.028583813 1.036039076 1.104945896 1.255908286 1 16.521853 ELEKPIQSKPQS(ph)PVIQAAAVS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 ELEKPIQS(0.172)KPQS(0.828)PVIQAAAVS(1)PK;ELEKPIQS(0.003)KPQS(0.997)PVIQAAAVS(1)PK ; 193.05 1.60E-21 1370520000 566060 341220 195087 1179330 514450 485220 1012460 860750 352590 1606590 TRUE FALSE FALSE 691978.0941 381122.7108 267257.7995 1243753.812 463229.5517 510625.3689 796139.65 649649.7129 423351.5789 1206096.68 0.57373352 0.315996816 0.221589035 1.031222316 0.384073316 0.42337018 0.660096046 0.538638174 0.351009654 1 20.20191413 -10.27643367 4.189407501 1.000458908 0.502181561 0.324808565 0.216259227 59110239.18 72498718.99 208162.5763 0.052059273 5.29E-11 10.27643367 -0.498277347 ELEKPIQSKPQS(ph)PVIQAAAVS(ph)PK ddPTM_HeLa_A486_30min_R1 3 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 ELEKPIQS(0.006)KPQS(0.994)PVIQAAAVS(1)PK;ELEKPIQSKPQS(1)PVIQAAAVS(1)PK;ELEKPIQS(0.025)KPQS(0.975)PVIQAAAVS(1)PK ;; 189.45 3.07E-21 1703930000 1307000 1055950 372433 1088870 810110 1492530 2110490 1828690 825890 3277700 TRUE FALSE FALSE 1215386.049 972272.6763 516649.0317 2534944.388 708498.4498 1308396.824 1582423.08 1412337.207 897478.8102 2456942.586 0.494674176 0.395724622 0.21028128 1.031747507 0.288365896 0.532530484 0.644061888 0.574835251 0.365282777 1 21.22843271 -11.10455022 2.463868829 1.889402209 0.508531133 0.320866158 0.216323668 16180900.42 4178858.333 80774799.96 0.052047612 7.86E-12 11.10455022 -1.380871076 ELEKPIQSKPQSPVIQAAAVS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 ELEKPIQSKPQSPVIQAAAVS(1)PK;ELEKPIQSKPQSPVIQAAAVS(1)PK ; 124.03 1.79E-06 8321400000 3986200 2596800 1418000 7090100 3978400 3620500 6423100 6141900 2387400 8556500 TRUE FALSE FALSE 4872916.438 2900473.171 1942577.208 7477414.21 3582296.527 3810063.782 5050752.213 4635589.395 2866529.281 6423522.021 0.75860508 0.451539383 0.302416214 1.164067654 0.557684167 0.59314248 0.786290169 0.72165852 0.446255072 1 22.61493311 -11.23819475 2.271082506 2.234713431 0.644758085 0.183235071 0.226444146 23181096.16 4044207.789 146946671.7 0.05613769 5.78E-12 11.23819475 -1.589955346 ELEKPIQSKPQSPVIQAAAVS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 ELEKPIQSKPQSPVIQAAAVS(1)PK 184.46 3.54E-21 7055100000 5932800 5064500 1832600 3949100 3785900 6145800 9017900 7897200 3785800 11496000 TRUE FALSE FALSE 5516941.357 4663170.575 2542231.799 9193704.376 3311037.12 5387593.682 6761526.038 6099179.955 4113956.192 8617326.774 0.640214942 0.541138882 0.295013972 1.066885894 0.384230192 0.625204756 0.784643105 0.707780976 0.477405151 1 23.03880896 -14 0.233070846 3.061677003 0.576362063 0.233504447 0.206570897 244.0818266 2.442357131 238.2195104 0.34045587 1.00E-14 14 -2.48531494 ELELMFGCQVEGDAAET(ph)PPRPR ddPTM_HeLa_A485_30min_R1 3 ELELMFGCQVEGDAAETPPRPR 22 1 Q02750;Q02750-2;H3BRW9 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 0 ELELMFGCQVEGDAAET(1)PPRPR;ELELMFGCQVEGDAAET(1)PPRPR;ELELMFGCQVEGDAAET(1)PPRPR ;; 107.83 0.00019781 129763000 46830 57174 65021 62062 84522 57084 64203 77314 67141 83664 TRUE FALSE FALSE 57247.17194 63860.00195 89074.97365 65452.28991 76106.69291 60072.82997 50485.50456 58352.62028 80615.58285 62808.10452 0.911461544 1.016747798 1.418208276 1.04209943 1.211733637 0.956450293 0.803805575 0.929061953 1.283521983 1 15.93866311 -6.277699043 24.41039838 0.978211671 1.126544866 0.117228129 0.168750645 1233.897965 1852427.071 0.061236013 0.054180055 5.28E-07 6.277699043 0.148333195 ELELMFGCQVEGDAAET(ph)PPRPR ddPTM_HeLa_A486_30min_R1 3 ELELMFGCQVEGDAAETPPRPR 22 1 Q02750;Q02750-2;H3BRW9 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 0 ELELMFGCQVEGDAAET(1)PPRPR;ELELMFGCQVEGDAAET(1)PPRPR;ELELMFGCQVEGDAAET(1)PPRPR ;; 143.08 2.58E-09 150594000 75952 93542 86198 41221.2 113257 92529 97824 100421 86288 86718 TRUE FALSE FALSE 70628.15702 86129.39125 119576.1741 95965.0368 99051.25098 81113.71275 73347.40052 77557.33048 93767.51332 65003.24836 1.086532732 1.325001341 1.839541516 1.476311403 1.523789249 1.247840912 1.128365157 1.193130073 1.442505039 1 15.98822419 -6.346588067 5.199814734 1.205644723 1.46596281 0.271262901 0.202994746 0.328609088 14.97737426 0.076029741 0.066910278 4.50E-07 6.346588067 0.260318087 ELEQHIQT(ph)SDPENFQSEER ddPTM_HeLa_A485_30min_R1 1 ELEQHIQTSDPENFQSEER 19 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 ELEQHIQT(0.551)S(0.449)DPENFQSEER 177.41 1.98E-13 786680000 296590 389720 344110 291270 360730 350650 370320 404940 379630 357450 TRUE FALSE FALSE 362565.4223 435294.3639 471410.6086 307181.3426 324814.4546 369009.4918 291198.1068 305627.8301 455818.2588 268344.2934 1.3511203 1.622148764 1.756737968 1.144728433 1.21043921 1.375134485 1.085166012 1.138939182 1.698632205 1 18.03372568 -5.269739834 24.98889332 1.240366557 1.58121699 0.369161544 0.203909407 631.9209323 1902425.366 0.056221477 0.085008369 5.37E-06 5.269739834 0.340850433 ELEQHIQTS(ph)DPENFQSEER ddPTM_HeLa_A485_30min_R1 1 ELEQHIQTSDPENFQSEER 19 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 ELEQHIQT(0.045)S(0.955)DPENFQSEER 149.99 1.12E-08 692100000 215240 320680 283130 261970 327970 308610 285810 302660 292530 290590 TRUE FALSE FALSE 263119.3954 358180.7365 387871.569 276280.7578 295316.1552 324768.3424 224744.3586 228432.1604 351238.0878 218151.2609 1.20613282 1.641891662 1.777993707 1.26646418 1.353721973 1.488730072 1.030222597 1.04712739 1.610066732 1 17.73496929 -6.140624205 1.09718258 1.193870143 1.520863642 0.222774959 0.233056466 0.739433681 1.871821419 0.119684773 0.121278222 7.23E-07 6.140624205 0.326993499 ELES(ph)SEEGGSAEER ddPTM_HeLa_A485_30min_R1 1 ELESSEEGGSAEER 14 0 J3QKQ1;J3KRR1;J9JIC5;Q9HAS0 J3QKQ1 C17orf75 Protein Njmu-R1 1 0 ELES(0.921)S(0.053)EEGGS(0.026)AEER 62.357 0.013871 0 399510 442670 354500 489470 476140 461700 578790 565760 364100 734910 TRUE FALSE FALSE 488379.6212 494436.4058 485644.302 516208.5067 428733.8298 485873.8981 455126.7882 427006.4729 437171.5303 551710.462 0.885210006 0.8961882 0.880252117 0.935651111 0.777099329 0.88066827 0.824937752 0.773968417 0.79239304 1 19.07355181 -5.752717678 24.99995863 0.83133874 0.897738896 0.154093263 0.063697367 303.5144114 869991.9679 0.017975982 0.022841485 1.77E-06 5.752717678 0.066400155 ELESPLT(ph)PGK ddPTM_HeLa_A485_30min_R1 2 ELESPLTPGK 10 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ELESPLT(1)PGK;ELESPLT(1)PGK ; 170.4 1.31E-06 344170000 1466060 1109730 865610 2400300 1445440 1111350 1687410 1208930 1171370 2924700 TRUE FALSE FALSE 1792179.989 1239503.27 1185835.16 2531422.311 1301526.918 1169538.568 1326881.069 912438.022 1406453.215 2195626.115 0.816250079 0.564532942 0.54008975 1.152938696 0.592781671 0.532667452 0.604329243 0.415570764 0.640570453 1 21.06620097 -10.10490607 5.69016284 1.000002852 0.646532461 0.226137906 0.193473426 7.22E-06 1.14E-06 0.193122339 0.04683867 7.85E-11 10.10490607 -0.353470391 ELESPLT(ph)PGK ddPTM_HeLa_A486_30min_R1 4 ELESPLTPGK 10 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ELESPLT(1)PGK;ELESPLT(1)PGK;ELES(0.001)PLT(0.999)PGK;ELESPLT(1)PGK ;;; 169.33 1.49E-06 983120000 2772030 2839190 1409500 1108190 2184790 3120460 3531760 3133590 2422160 4090260 TRUE FALSE FALSE 2577725.012 2614202.244 1955296.148 2579922.325 1910753.266 2735489.372 2648076.293 2420139.963 2632114.779 3066032.273 0.840736425 0.852633636 0.637728495 0.841453088 0.623200637 0.892191969 0.863681807 0.789339364 0.858475888 1 21.54794145 ELESPLT(ph)PGKVCR ddPTM_HeLa_A485_30min_R1 2 ELESPLTPGKVCR 13 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ELES(0.002)PLT(0.998)PGKVCR;ELESPLT(1)PGKVCR ; 111.22 0.00035169 1248330000 182770 194780 160200 200920 246640 234550 338030 342170 179430 295310 TRUE FALSE FALSE 223426.556 217557.8266 219464.6465 211895.7508 222083.6556 246830.6753 265807.129 258252.271 215439.9552 221694.6518 1.007812115 0.981339987 0.989941096 0.955800012 1.001754683 1.113381281 1.198978536 1.164900772 0.971786885 1 17.75821444 -6.215191375 4.968320276 1.107128523 0.984050631 0.365863135 0.065679875 0.199245152 11.5964382 0.022424693 0.022019722 6.09E-07 6.215191375 -0.123077892 ELESPLT(ph)PGKVCR ddPTM_HeLa_A486_30min_R1 2 ELESPLTPGKVCR 13 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ELESPLT(1)PGKVCR;ELESPLT(1)PGKVCR ; 150.76 6.85E-08 937760000 725820 698690 390670 436220 848640 725600 1086160 1032790 500600 1046230 TRUE FALSE FALSE 674943.7661 643323.2598 541947.8865 1015542.205 742195.6579 636082.8494 814391.2798 797646.2626 543992.4111 784247.1982 0.860626302 0.820306737 0.691042171 1.29492615 0.946379738 0.81107443 1.038436964 1.017085256 0.693649161 1 19.58094894 ELESQISELQEDLESER ddPTM_HeLa_A485_30min_R1 1 ELESQISELQEDLESER 17 0 P35579 P35579 MYH9 Myosin-9 0 0 171.91 4.40E-12 0 8808.6 7728.4 7709 7887.8 11702 6409.9 9586.8 8951.2 7276 8982.8 FALSE FALSE TRUE 10768.04268 8632.169152 10560.8799 8318.690541 10536.90779 6745.512452 7538.501863 6755.904165 8736.226461 6743.553276 1.596790629 1.280062424 1.566070507 1.233576751 1.562515689 1.000290526 1.117882747 1.001831511 1.295493059 1 12.71929325 -6.265885872 24.99956579 1.085387979 1.433153207 0.634200237 0.138260942 245.8250707 1382099.948 0.044295279 0.040402641 5.42E-07 6.265885872 0.347765229 ELEVQHPAAK ddPTM_HeLa_A485_30min_R1 1 ELEVQHPAAK 10 0 P50990-2;P50990;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 0 76.143 0.026711 26029000 16418 17556 15937 17635 24219 20754 24258 27176 17338 26976 FALSE FALSE TRUE 20070.12746 19609.02148 21832.75949 18598.3554 21807.67132 21840.64735 19075.08013 20511.04339 20817.57757 20251.37966 0.991049884 0.96828077 1.078087511 0.918374734 1.076848674 1.078477008 0.941915092 1.012822027 1.027958486 1 14.30573258 ELFDDPS(ph)YVNVQNLDK ddPTM_HeLa_A485_30min_R1 1 ELFDDPSYVNVQNLDK 16 0 H0Y539;Q5T188;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 H0Y539;P29353-2 SHC1 SHC-transforming protein 1 1 0 ELFDDPS(0.747)Y(0.253)VNVQNLDK 153.38 3.46E-08 89356000 164860 143430 100930 166720 196560 153940 207400 209590 118650 220860 TRUE FALSE FALSE 201532.5382 160202.8908 138268.207 175827.4914 176989.7962 162000.0604 163087.2957 158187.7239 142461.9667 165803.6666 1.215489032 0.966220435 0.833927318 1.06045599 1.067466117 0.977059577 0.983616943 0.9540665 0.859220846 1 17.33911639 -7.06476959 1.80826363 0.927919788 1.014107087 0.130184713 0.095751812 0.856196976 5.40374084 0.06434562 0.030597361 8.61E-08 7.06476959 0.086187299 ELFDDPS(ph)YVNVQNLDK ddPTM_HeLa_A486_30min_R1 1 ELFDDPSYVNVQNLDK 16 0 H0Y539;Q5T188;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 H0Y539;P29353-2 SHC1 SHC-transforming protein 1 1 0 ELFDDPS(0.581)Y(0.419)VNVQNLDK 150.68 4.89E-08 75083000 138150 127160 93462 60031 128110 118400 135570 156330 89172 148880 TRUE FALSE FALSE 128466.3984 117083.3785 129652.9894 139755.2018 112041.2492 103793.0118 101648.9521 120737.0717 96901.50076 111599.479 1.151137977 1.049139114 1.161770562 1.252292601 1.003958533 0.930049251 0.910837157 1.081878453 0.868297072 1 16.76797077 -5.923739132 6.955498094 0.96105699 1.146071768 0.636036559 0.070155971 0.148534606 11.16477069 0.021901532 0.024873777 1.19E-06 5.923739132 0.185014778 ELFDDPSY(ph)VNVQNLDK ddPTM_HeLa_A485_30min_R1 1 ELFDDPSYVNVQNLDK 16 0 H0Y539;Q5T188;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 H0Y539;P29353-2 SHC1 SHC-transforming protein 1 1 0 ELFDDPS(0.077)Y(0.923)VNVQNLDK 214.65 1.72E-26 84726000 142160 110660 80304 150620 155330 116940 151650 163890 86079 157450 TRUE FALSE FALSE 173783.0016 123600.7244 110011.7913 158847.9892 139864.7998 123062.7976 119248.7386 123695.7205 103354.2657 118200.6127 1.47023774 1.045685988 0.930720991 1.343884652 1.183283205 1.041135023 1.008867348 1.046489673 0.874397039 1 16.85087799 -6.398362821 3.085055791 0.988517066 1.180207005 0.328466832 0.144357651 0.374312881 6.776907392 0.056674897 0.048523154 4.00E-07 6.398362821 0.191689938 ELFDDPSY(ph)VNVQNLDK ddPTM_HeLa_A486_30min_R1 1 ELFDDPSYVNVQNLDK 16 0 H0Y539;Q5T188;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 H0Y539;P29353-2 SHC1 SHC-transforming protein 1 1 0 ELFDDPS(0.11)Y(0.89)VNVQNLDK 176.51 7.29E-13 99542000 164420 149050 88950 79680 155020 157760 174180 182040 107470 172450 TRUE FALSE FALSE 152895.0071 137238.7352 123393.8222 185499.0668 135575.9461 138297.1752 130598.3217 140593.4659 116785.5861 129267.3975 1.182780887 1.061665492 0.954562593 1.435002718 1.048802317 1.069853481 1.0102959 1.087617362 0.903441922 1 16.97999893 -5.975622564 24.9993486 1.023899537 1.150129216 0.23613728 0.122363879 390.3934183 400350.9677 0.038219248 0.043334803 1.06E-06 5.975622564 0.126229679 ELFQT(ph)PDHTEESTTDDKTTK ddPTM_HeLa_A485_30min_R1 1 ELFQTPDHTEESTTDDKTTK 20 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PDHTEESTTDDKTTK 178.69 8.70E-19 200780000 220060 169340 115780 290560 216630 191970 287120 281600 193540 451110 TRUE FALSE FALSE 269011.5878 189142.8399 158611.84 306432.5571 195061.5566 202021.2524 225774.4664 212537.1585 232381.7027 338656.5791 0.794349215 0.558509273 0.468355998 0.904847495 0.57598632 0.596537215 0.666676747 0.627589043 0.686186884 1 18.3694635 -8.246808079 3.561682475 0.999995605 0.645226496 0.444816112 0.116796074 2.27195649 31.79790614 0.109942124 0.029014152 5.66E-09 8.246808079 -0.354769109 ELFQT(ph)PDHTEESTTDDKTTK ddPTM_HeLa_A486_30min_R1 1 ELFQTPDHTEESTTDDKTTK 20 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PDHTEESTTDDKTTK 170.59 1.50E-13 172550000 214900 215160 118790 89387 228630 279550 354580 345460 192940 389720 TRUE FALSE FALSE 199836.6197 198109.938 164788.6693 208097.4534 199953.0935 245061.9633 265860.3336 266806.2993 209664.1945 292131.5753 0.684063746 0.678153116 0.564090578 0.71234153 0.684462449 0.838875301 0.910070516 0.913308666 0.717704665 1 18.15625878 -6.261926496 2.465078127 0.879461864 0.65581653 0.670990338 0.074654383 0.180781704 2.169165123 0.027941579 0.025830848 5.47E-07 6.261926496 -0.223645334 ELFQT(ph)PGHTEEAVAAGK ddPTM_HeLa_A485_30min_R1 2 ELFQTPGHTEEAVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PGHTEEAVAAGK;ELFQT(1)PGHTEEAVAAGK ; 250.86 3.93E-43 203700000 325450 329120 272650 363040 460430 339810 416500 450690 346270 560000 TRUE FALSE FALSE 397845.2297 367607.721 373514.5809 382871.9559 414587.9725 357601.9262 327511.3725 340157.5708 415763.2128 420402.306 0.946344071 0.874418898 0.888469391 0.910727535 0.986169597 0.850618374 0.779042759 0.809123941 0.98896511 1 18.68141106 ELFQT(ph)PGHTEEAVAAGK ddPTM_HeLa_A486_30min_R1 4 ELFQTPGHTEEAVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PGHTEEAVAAGK;ELFQT(1)PGHTEEAVAAGK;ELFQT(1)PGHTEEAVAAGK;ELFQT(1)PGHTEEAVAAGK ;;; 235.68 4.16E-42 400557000 650952 644962 446509 231480 652544 641863 730694 681735 512195 697273 TRUE FALSE FALSE 605323.6263 593852.8622 619409.2427 538897.1384 570695.8468 562676.469 547866.6327 526518.8227 556592.475 522671.3023 1.158134421 1.136188001 1.185083704 1.031044054 1.09188288 1.076539819 1.048204924 1.007361262 1.064899627 1 18.99554442 -5.05276134 0.357415862 1.009799975 1.232761416 0.682442898 0.033703054 2.127465939 0.329877641 0.033912354 0.195376528 8.86E-06 5.05276134 0.222961441 ELFQT(ph)PGHTEELVAAGK ddPTM_HeLa_A485_30min_R1 2 ELFQTPGHTEELVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PGHTEELVAAGK;ELFQT(1)PGHTEELVAAGK ; 206.85 3.62E-25 220339000 388310 357180 303710 398130 518850 368360 443860 428120 369930 586670 TRUE FALSE FALSE 474688.2198 398949.0939 416064.9674 419878.8338 467191.4722 387646.76 349025.685 323122.8987 444171.5578 440423.9659 1.077798341 0.905829666 0.944691932 0.953351467 1.06077668 0.880167271 0.792476595 0.733663297 1.008509055 1 18.74853345 -6.434679662 7.699101635 0.857960202 0.979175942 0.223138209 0.092849323 0.384521686 29.89823969 0.032215251 0.028321493 3.68E-07 6.434679662 0.12121574 ELFQT(ph)PGHTEELVAAGK ddPTM_HeLa_A486_30min_R1 3 ELFQTPGHTEELVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PGHTEELVAAGK;ELFQT(1)PGHTEELVAAGK;ELFQT(1)PGHTEELVAAGK ;; 197.68 7.48E-25 338226000 419187 395490 269541 142792 376107 370752 414487 426571 350369 406222 TRUE FALSE FALSE 389804.156 364149.9321 373914.4938 332426.9923 328932.153 325012.3878 310777.9686 329450.0953 380739.267 304501.3671 1.280139264 1.195889317 1.227956699 1.091709359 1.080232106 1.067359371 1.02061272 1.081933058 1.250369647 1 18.21608918 -5.266298787 4.717370764 1.083670161 1.232439229 0.525978838 0.065319346 0.156120577 9.980615461 0.018478996 0.030194752 5.42E-06 5.266298787 0.148769068 ELFQT(ph)PVCTDKPTTHEK ddPTM_HeLa_A485_30min_R1 2 ELFQTPVCTDKPTTHEK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PVCTDKPTTHEK;ELFQT(1)PVCTDKPTTHEK ; 201.15 5.31E-25 478250000 650140 478730 326090 777620 678200 510020 683430 613190 484300 1024250 TRUE FALSE FALSE 794761.4 534713.3091 446724.2607 820099.4116 610676.0267 536723.8586 537409.5974 462804.1911 581494.5677 768923.3249 1.033602928 0.69540524 0.580973741 1.066555513 0.794196257 0.698019999 0.698911816 0.601886009 0.756245192 1 19.55248022 -6.012041275 24.36708528 0.725455709 0.829171396 0.052875844 0.164526064 1171.813123 2371319.98 0.052817515 0.055672613 9.73E-07 6.012041275 0.103715688 ELFQT(ph)PVCTDKPTTHEK ddPTM_HeLa_A486_30min_R1 1 ELFQTPVCTDKPTTHEK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PVCTDKPTTHEK 211.06 1.63E-25 199210000 312080 284260 145630 110960 216820 345300 348450 313190 230840 348090 TRUE FALSE FALSE 290204.8036 261734.2023 202021.8361 258320.4876 189624.4138 302700.3968 261264.1245 241883.4739 250849.3971 260925.9983 1.112211146 1.003097445 0.774249547 0.990014369 0.726736374 1.16010056 1.00129587 0.927019444 0.961381383 1 17.99328117 -6.279319897 24.98919014 1.004856662 0.921460413 0.122908451 0.118078056 2073.363462 2897652.915 0.042293248 0.037377271 5.26E-07 6.279319897 -0.083396249 ELFQTPGHTEESMTDDKITEVS(ph)CKSPQPESFK ddPTM_HeLa_A485_30min_R1 1 ELFQTPGHTEESMTDDKITEVSCKSPQPESFK 32 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQTPGHTEESMTDDKIT(0.154)EVS(0.575)CKS(0.271)PQPESFK 213.34 2.69E-30 210160000 102890 74865 41965 221580 111460 86013 200550 226650 105660 569530 TRUE FALSE FALSE 125777.5255 83619.81051 57489.59981 233684.3543 100362.651 90516.50768 157700.8542 171063.7321 126864.9928 427556.6524 0.29417745 0.195575978 0.134460777 0.546557639 0.234735328 0.211706465 0.368842008 0.40009606 0.296720896 1 18.70575607 -14 0.272951848 5.926783441 0.249491061 0.790197085 0.109291384 94.82313687 0.91907627 263.4872728 0.133944055 1.00E-14 14 -5.67729238 ELFQTPGHTEESMTDDKITEVSCKS(ph)PQPESFK ddPTM_HeLa_A485_30min_R1 1 ELFQTPGHTEESMTDDKITEVSCKSPQPESFK 32 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQTPGHTEESMTDDKIT(0.306)EVS(0.306)CKS(0.387)PQPESFK 131.04 8.74E-07 444780000 113970 86149 58750 217220 142040 107560 199780 259910 98418 537610 TRUE FALSE FALSE 139322.2333 96223.37615 80484.06979 229086.1786 127897.9989 113191.6753 157095.3709 196166.665 118169.5899 403593.721 0.345204165 0.238416435 0.199418538 0.567615814 0.316897891 0.280459456 0.389241365 0.486049844 0.29279343 1 18.6225442 -14 0.283453746 5.878936331 0.307567082 0.778083456 0.104946415 106.9581534 1.021016368 307.3931781 0.119398548 1.00E-14 14 -5.571369249 ELFQTPGHTEESMTDDKITEVSCKS(ph)PQPESFK ddPTM_HeLa_A486_30min_R1 1 ELFQTPGHTEESMTDDKITEVSCKSPQPESFK 32 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQTPGHTEESMTDDKIT(0.039)EVS(0.039)CKS(0.922)PQPESFK 159.91 1.07E-12 328450000 105040 97388 39046 51226 77940 159300 178940 153680 84415 242460 TRUE FALSE FALSE 97677.23843 89670.6202 54165.65689 119256.7168 68164.03844 139647.1856 134167.3194 118690.4188 91732.16017 181746.4379 0.53743688 0.493383096 0.298028713 0.656170862 0.375050203 0.768362711 0.738211549 0.653054994 0.504726042 1 17.47156756 -6.267630133 24.96997785 0.711520782 0.473766217 0.44221016 0.145493899 514.8324675 2076535.035 0.048961973 0.044256757 5.40E-07 6.267630133 -0.237754565 ELFS(ph)PLHALNFGIGGDTTR ddPTM_HeLa_A486_30min_R1 1 ELFSPLHALNFGIGGDTTR 19 0 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 0 ELFS(1)PLHALNFGIGGDTTR 103.29 8.81E-05 30939000 10413 11962 6728.7 4038.8 13640 9772.8 12135 11780 9427.7 12030 TRUE FALSE FALSE 9683.102473 11014.08756 9334.232841 9402.53051 11929.14401 8567.131299 9098.694649 9097.951156 10244.90063 9017.609698 1.073799244 1.221397679 1.035111649 1.042685459 1.322872071 0.950044589 1.008991845 1.008909396 1.136099362 1 13.13852935 ELFSPLHALNFGIGGDGTQHVLWR ddPTM_HeLa_A485_30min_R1 1 ELFSPLHALNFGIGGDGTQHVLWR 24 0 M0R389;Q15102;M0QXS6;M0R323;M0QZT2;M0R1K3 M0R389 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 0 114.2 5.26E-08 9596600 3430.4 4412.9 3592.6 1896.8 3655.5 2939.4 4317.1 5086.8 3486.1 4504.7 FALSE FALSE TRUE 4193.480645 4928.950268 4921.652241 2000.417381 3291.545585 3093.302439 3394.716318 3839.254324 4185.728294 3381.761193 1.240028614 1.457509856 1.4553518 0.591531237 0.973322892 0.914701619 1.003830881 1.135282507 1.237736213 1 11.72355907 -5.222921652 24.95363709 0.983181291 1.391618216 0.552784139 0.166793861 419.8919251 272025.6341 0.047274232 0.081879546 5.99E-06 5.222921652 0.408436925 ELFSPLHALNFGIGGDTTR ddPTM_HeLa_A485_30min_R1 1 ELFSPLHALNFGIGGDTTR 19 0 P68402;P68402-3;P68402-2;P68402-4 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 0 0 100.67 7.45E-05 10027000 8624.8 11871 11490 8580.4 13422 8945.5 12491 13160 9000.7 11589 FALSE FALSE TRUE 10543.357 13259.21019 15740.62914 9049.125525 12085.65855 9413.872548 9822.195808 9932.489366 10807.05793 8700.07558 1.211869588 1.524033908 1.809252 1.040120335 1.389144088 1.082044916 1.128978216 1.141655526 1.242179776 1 13.08681222 -5.280007196 24.99973434 1.158924631 1.515950076 0.499530324 0.168809307 662.3194395 891746.2682 0.047173894 0.070113033 5.25E-06 5.280007196 0.357025444 ELGITALHIK ddPTM_HeLa_A485_30min_R1 2 ELGITALHIK 10 0 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 0 ; ; 147.95 0.00019948 58433000 87519 92812 83912 91298 112633 93368 115561 114944 98358 154792 FALSE FALSE TRUE 106987.2996 103665.556 114954.5407 96285.37856 101418.863 98256.60411 90870.4483 86753.80377 118097.5484 116205.2031 0.920675639 0.892090485 0.989237466 0.828580614 0.872756643 0.84554393 0.781982612 0.746556965 1.016284514 1 16.82631514 -5.277963585 24.86139373 0.855081499 0.929810132 0.089134039 0.083816646 1426.415697 2146102.505 0.022999966 0.03422895 5.27E-06 5.277963585 0.074728633 ELGITALHIK ddPTM_HeLa_A486_30min_R1 4 ELGITALHIK 10 0 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 0 ;;; ;;; 155.42 2.64E-05 232462000 360624 414536 311073 156305 551453 407651 452512 429251 374861 454664 FALSE FALSE TRUE 335346.1199 381686.6576 431528.7964 363885.9392 482284.6226 357359.1643 339288.7114 331519.9178 407354.2533 340813.175 0.983958792 1.119929291 1.266174045 1.067699156 1.415099703 1.048548561 0.995526982 0.972732107 1.195242095 1 18.37862158 -6.482576166 24.99491356 1.036236255 1.173801689 0.215400849 0.122165313 779.8473237 483647.4714 0.042579448 0.03754625 3.29E-07 6.482576166 0.137565434 ELGTGEQPLS(ph)PTTATSPYGGGHALAGQTS(ph)PK ddPTM_HeLa_A485_30min_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 2 0 ELGT(0.004)GEQPLS(0.896)PT(0.046)T(0.053)AT(0.001)SPYGGGHALAGQT(0.233)S(0.767)PK 148.51 1.33E-09 391560000 577450 549540 384900 767720 533440 570430 749340 653880 391240 964180 TRUE FALSE FALSE 705901.7603 613803.9226 527290.527 809658.5996 480328.8406 600296.8327 589237.3875 493514.9048 469758.2793 723827.6704 0.975234561 0.847997317 0.728475228 1.118579232 0.663595577 0.829336674 0.81405756 0.681812709 0.648991878 1 19.46528673 -5.809664548 24.99997831 0.761929622 0.899099013 0.212257114 0.133594273 187.1645295 97025.20041 0.040320406 0.045719139 1.55E-06 5.809664548 0.137169391 ELGTGEQPLS(ph)PTTATSPYGGGHALAGQTS(ph)PK ddPTM_HeLa_A486_30min_R1 3 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 2 0 ELGT(0.001)GEQPLS(0.519)PT(0.219)T(0.256)AT(0.004)S(0.002)PYGGGHALAGQT(0.33)S(0.67)PK;ELGT(0.001)GEQPLS(0.723)PT(0.19)T(0.056)AT(0.022)S(0.007)PY(0.001)GGGHALAGQT(0.263)S(0.737)PK;ELGTGEQPLS(0.978)PT(0.01)T(0.012)ATSPYGGGHALAGQT(0.33)S(0.67)PK ;; 131.17 2.03E-06 731770000 512368 440113 224173 104417.2 312415 473637 540338 457708 373979 832760 TRUE FALSE FALSE 476453.6491 405236.843 310978.7892 243088.5186 273228.9975 415204.4825 405139.7173 353497.8801 406395.8008 624231.4756 0.763264378 0.649177202 0.498178643 0.389420476 0.437704615 0.66514506 0.64902161 0.566292944 0.651033818 1 19.25172158 -8.923224218 0.681845466 1.016550551 0.56105402 0.582690447 0.106787378 3.191431181 1.749853989 0.257028988 0.044817431 1.19E-09 8.923224218 -0.455496531 ELGTGEQPLS(ph)PTTATSPYGGGHALAGQTSPK ddPTM_HeLa_A486_30min_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 ELGTGEQPLS(0.964)PT(0.031)T(0.006)ATSPYGGGHALAGQTSPK 256.21 1.48E-63 538070000 181230 176170 125660 21316 188390 173500 185490 177750 169890 169690 TRUE FALSE FALSE 168526.7129 162209.6476 174318.9173 49624.72525 164760.3695 152095.334 139078.4401 137280.2053 184616.202 127198.5195 1.324910962 1.275247921 1.370447691 0.390136029 1.295301 1.195731952 1.093396689 1.079259458 1.451402129 1 16.95672235 ELGTGEQPLSPT(ph)TATSPYGGGHALAGQTSPK ddPTM_HeLa_A485_30min_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 ELGTGEQPLS(0.107)PT(0.729)T(0.162)AT(0.002)SPYGGGHALAGQTSPK 226.59 5.34E-39 941790000 314670 369490 338320 303800 474310 408400 486630 510580 306760 403280 TRUE FALSE FALSE 384667.2559 412698.6414 463478.6467 320395.8247 427086.031 429783.1925 382657.5251 385359.4544 368323.9182 302749.7178 1.270578413 1.363167716 1.530897039 1.058286122 1.410690104 1.419598986 1.263940154 1.272864785 1.216595414 1 18.20776609 -8.228041709 0.86631311 0.99947296 1.339980692 0.426356526 0.116944052 0.879563269 1.34400114 0.112680607 0.038937851 5.92E-09 8.228041709 0.340507733 ELGTGEQPLSPT(ph)TATSPYGGGHALAGQTSPK ddPTM_HeLa_A486_30min_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 ELGTGEQPLS(0.364)PT(0.539)T(0.096)ATSPYGGGHALAGQTSPK 244.62 1.84E-50 922550000 305930 317000 232410 29678 310330 290030 323680 333920 332990 282570 TRUE FALSE FALSE 284485.8868 291879.7655 322405.3762 69091.88384 271405.5177 254249.0474 242691.8405 257893.7054 361853.8413 211812.6328 1.343101604 1.378009242 1.522125342 0.326193405 1.281347171 1.200348837 1.145785486 1.217555828 1.70836761 1 17.69242911 -7.544337744 24.68495765 1.390443176 1.166503436 0.040339353 0.34304448 646.6885129 743889.4985 0.231124412 0.087375053 2.86E-08 7.544337744 -0.223939739 ELGTGEQPLSPTTATSPYGGGHALAGQTS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 ELGTGEQPLSPTTATSPYGGGHALAGQT(0.183)S(0.817)PK 206.73 2.35E-29 368070000 111140 118350 43839 18771 66478 104490 145740 113420 98711 172800 TRUE FALSE FALSE 103349.6599 108971.515 60814.63485 43699.83663 58139.70936 91599.08618 109274.3105 87596.74194 107267.349 129529.7553 0.797883542 0.841285578 0.469503202 0.337372958 0.448852152 0.707166365 0.84362323 0.676267332 0.828129017 1 16.98292402 -6.506385561 5.578942593 0.806771716 0.573619135 0.356288656 0.161394301 0.241341252 25.05002498 0.066907321 0.055523168 3.12E-07 6.506385561 -0.233152581 ELHINLIPNK ddPTM_HeLa_A485_30min_R1 2 ELHINLIPNK 10 0 P07900;P07900-2;G3V2J8;Q14568 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 0 ; ; 92.538 0.0099131 47270000 150384 112682 130019 201515 175098 119513 156584 96722 154805 273890 FALSE FALSE TRUE 183836.402 125859.1797 178118.4386 212523.2542 157664.6283 125770.5159 123128.5492 73000.77785 185872.9435 205614.2636 0.894083897 0.612113078 0.86627472 1.033601709 0.766798108 0.611681863 0.598832722 0.355037518 0.903988567 1 17.64958082 -6.049965231 5.951501529 0.650670594 0.843072588 0.108997735 0.192563414 0.37348846 31.38359509 0.062742966 0.063922369 8.91E-07 6.049965231 0.192401994 ELHINLIPNK ddPTM_HeLa_A486_30min_R1 2 ELHINLIPNK 10 0 P07900;P07900-2;G3V2J8;Q14568 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 0 ; ; 117.52 0.0015394 62695000 267350 326170 224608 95798 287090 350930 328710 320240 313960 337560 FALSE FALSE TRUE 248610.1456 300323.1013 311582.2328 223022.5854 251080.4952 307635.8246 246463.2813 247328.3428 341174.3056 253032.7789 0.982521501 1.186894056 1.231390787 0.881398001 0.992284463 1.215794357 0.97403697 0.977455743 1.34834035 1 17.94896476 -10.2624857 12.8503091 1.000000001 1.083223619 0.032203713 0.142413463 0 0 0.13609101 0.033006918 5.46E-11 10.2624857 0.083223618 ELHINLIPNKQDR ddPTM_HeLa_A485_30min_R1 4 ELHINLIPNKQDR 13 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;; ;;; 158.81 2.40E-08 2591600000 2447640 2944350 2626760 2325850 3483980 3015870 3536520 3776540 2630410 3183970 FALSE FALSE TRUE 2992109.074 3288666.12 3598507.833 2452905.296 3137102.718 3173776.29 2780913.611 2850337.644 3158309.159 2390264.876 1.251789751 1.375858447 1.505484965 1.026206477 1.312449825 1.327792715 1.163433241 1.192477734 1.32132183 1 21.18873907 -13.99999997 0.126631352 0.102098215 1.393791457 0.328396727 0.121411777 176.4855894 1.42113878 40.41874176 1.010880681 1.00E-14 13.99999997 1.291693242 ELHINLIPNKQDR ddPTM_HeLa_A486_30min_R1 4 ELHINLIPNKQDR 13 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;; ;;; 154.72 1.80E-07 2541090000 2981950 3091480 2272360 1084880 3600320 2796610 3420930 3359140 2431830 3405250 FALSE FALSE TRUE 2772930.704 2846499.866 3152278.648 2525655.467 3148734.294 2451592.692 2564977.131 2594337.152 2642622.982 2552553.236 1.086336091 1.115157884 1.234951187 0.989462406 1.233562635 0.960447233 1.004867242 1.016369459 1.035286138 1 21.28350962 -6.280006378 24.99469126 1.00450918 1.12877679 0.468880756 0.068335991 750.6834867 1010559.106 0.022831357 0.020167961 5.25E-07 6.280006378 0.12426761 ELHPQLLS(ph)PTK ddPTM_HeLa_A485_30min_R1 4 ELHPQLLSPTK 11 0 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 0 ELHPQLLS(0.992)PT(0.008)K;ELHPQLLS(0.946)PT(0.054)K;ELHPQLLS(0.961)PT(0.039)K;ELHPQLLS(0.982)PT(0.018)K ;;; 106.3 0.00051452 2407510000 2643050 2514590 2051590 3196460 3230410 2779160 3631800 3339600 2225800 4128510 TRUE FALSE FALSE 3230987.354 2808649.426 2810558.515 3371074.516 2908779.038 2924672.52 2855836.261 2520557.864 2672497.644 3099348.437 1.042473094 0.906206412 0.906822376 1.087672001 0.938513077 0.943641085 0.921431172 0.813254113 0.862277249 1 21.56353352 -6.74346068 2.125936234 0.878419502 0.97299382 0.207844904 0.069266166 0.443456624 4.103407507 0.033735083 0.022114259 1.81E-07 6.74346068 0.094574318 ELHPQLLS(ph)PTK ddPTM_HeLa_A486_30min_R1 4 ELHPQLLSPTK 11 0 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 0 ELHPQLLS(0.993)PT(0.007)K;ELHPQLLS(0.999)PT(0.001)K;ELHPQLLS(0.994)PT(0.006)K;ELHPQLLS(0.964)PT(0.036)K ;;; 128.06 3.76E-05 2405600000 3858600 3678690 2035590 1707610 3376720 3864670 4657200 4363980 2809140 5174600 TRUE FALSE FALSE 3588132.066 3387177.207 2823824.963 3975402.378 2953180.291 3387886.308 3491919.301 3370397.019 3052638.517 3878846.479 0.925051323 0.873243431 0.728006375 1.024892942 0.761355291 0.873426243 0.900246844 0.868917354 0.786996478 1 21.88719625 -10.14942391 4.515354536 1.000020136 0.860485215 0.210437645 0.081215142 1.55E-05 2.92E-06 0.073954396 0.017933988 7.09E-11 10.14942391 -0.13953492 ELHYLPFPS(ph)P ddPTM_HeLa_A485_30min_R1 4 ELHYLPFPSP 10 0 Q8N565 Q8N565 MREG Melanoregulin 1 0 ELHYLPFPS(1)P;ELHYLPFPS(1)P;ELHYLPFPS(1)P;ELHYLPFPS(1)P ;;; 96.015 0.0023209 169527000 315687 323955 287046 279800 307486 281046 417140 365306 293357 487955 TRUE FALSE FALSE 385910.484 361838.7192 393236.2604 295084.7655 276871.6142 295761.134 328014.6313 275714.1307 352231.0591 366316.7986 1.053488362 0.987775392 1.073486834 0.805545273 0.7558256 0.807391676 0.895439774 0.752665812 0.961547656 1 18.48273234 -5.262585965 24.98701341 0.839440423 1.033202721 0.518809411 0.080387016 72.88589432 1588381.658 0.021297761 0.03370811 5.46E-06 5.262585965 0.193762298 ELHYLPFPS(ph)P ddPTM_HeLa_A486_30min_R1 2 ELHYLPFPSP 10 0 Q8N565 Q8N565 MREG Melanoregulin 1 0 ELHYLPFPS(1)P;ELHYLPFPS(1)P ; 117.67 0.00038136 110018000 169274 188735 208150 67812 239360 200576 200312 185852 217490 220260 TRUE FALSE FALSE 157408.7667 173778.9512 288751.2545 157869.763 209337.2369 175830.9724 150191.8189 143537.5567 236342.2083 165105.4623 0.953383156 1.052533022 1.748889772 0.956175288 1.267900128 1.06496157 0.909672017 0.869368915 1.431462079 1 17.33302833 -6.37436092 5.777315706 1.034905843 1.20474558 0.06836229 0.254956183 0.626987308 27.8790568 0.091405212 0.080234324 4.22E-07 6.37436092 0.169839736 ELILGSETPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 ELILGS(0.001)ET(0.016)PS(0.491)S(0.491)PR 84.468 0.0027782 252640000 37011 53582 50574 53581 64645 57523 60100 68994 44854 66194 TRUE FALSE FALSE 45243.96926 59847.9488 69283.42716 56507.99436 58208.71682 60534.81533 47259.14403 52073.11332 53855.78637 49693.05401 0.910468679 1.204352399 1.394227595 1.137140703 1.171365254 1.218174583 0.951021123 1.047895211 1.083768898 1 15.60075659 -6.752920713 24.99951693 1.024662571 1.182466994 0.291955603 0.115248433 242.5365673 711767.7442 0.045803177 0.034901092 1.77E-07 6.752920713 0.157804423 ELILGSETPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 ELILGSETPS(0.685)S(0.315)PR 137.39 7.72E-06 245120000 273300 300650 246240 99114 333370 265310 280150 303810 235580 296520 TRUE FALSE FALSE 254143.0813 276825.3991 341590.7225 230742.4009 291555.626 232578.7497 210053.5069 234639.0951 256000.2641 222269.462 1.143400803 1.245449539 1.536831553 1.038120122 1.311721473 1.046381935 0.945039885 1.055651519 1.151756349 1 17.76195022 -6.272549545 22.78894074 1.037323716 1.258165089 0.411476102 0.128723641 228.0601392 467789.4179 0.045224837 0.040339462 5.34E-07 6.272549545 0.220841373 ELILGSETPSS(ph)PR ddPTM_HeLa_A485_30min_R1 3 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 ELILGSETPSS(1)PR;ELILGSETPSS(1)PR;ELILGSETPS(0.009)S(0.991)PR ;; 312.25 2.40E-68 736960000 808280 1091620 1070990 845650 1306190 1057480 1186920 1407010 954820 1148900 TRUE FALSE FALSE 988079.0975 1219275.463 1467193.769 891845.7182 1176141.137 1112848.018 933324.8458 1061938.591 1146443.616 862500.3739 1.145598457 1.413652098 1.701093487 1.034023573 1.363641307 1.290258012 1.082115294 1.231232616 1.329209413 1 19.71816556 -5.281131352 24.9553276 1.20661201 1.419468501 0.273841312 0.170181438 1093.399913 1385646.069 0.047727237 0.070898614 5.23E-06 5.281131352 0.212856492 ELILGSETPSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 ELILGSETPSS(1)PR;ELILGSETPS(0.054)S(0.946)PR;ELILGSETPS(0.039)S(0.961)PR ;; 344.71 1.38E-82 904370000 911790 999230 874680 291521 1172000 910360 993530 985150 818110 1034890 TRUE FALSE FALSE 847878.2295 920047.3757 1213379.521 678675.6207 1024996.832 798049.0391 744938.2855 760852.8507 889024.4335 775746.808 1.092983201 1.186015032 1.564143749 0.874867436 1.321303318 1.028749369 0.960285338 0.980800492 1.146023966 1 19.56522633 -6.348930481 8.240963572 1.017137696 1.207759175 0.229477497 0.169087119 0.501396082 43.05556936 0.058693327 0.051707936 4.48E-07 6.348930481 0.190621478 ELINQDES(ph)VIR ddPTM_HeLa_A485_30min_R1 2 ELINQDESVIR 11 0 A0A494C0Q2 A0A494C0Q2 1 0 ELINQDES(1)VIR;ELINQDES(1)VIR ; 66.215 0.012876 607043000 3440.8 4975.2 5020.7 5731.1 7249.1 5421 7176 7602.8 3722.7 8454 TRUE FALSE FALSE 4206.194089 5557.006362 6878.065859 6044.175481 6527.354151 5704.835178 5642.788977 5738.201379 4469.811743 6346.573384 0.662750406 0.875591603 1.083744793 0.952352571 1.028484783 0.898884301 0.88910797 0.904141658 0.704287412 1 12.63176215 -9.568280956 12.03182475 0.999999971 0.900892476 0.061977048 0.121869481 0 0 0.121647506 0.029503854 2.70E-10 9.568280956 -0.099107496 ELIPQES(ph)PR ddPTM_HeLa_A485_30min_R1 2 ELIPQESPR 9 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 ELIPQES(1)PR;ELIPQES(1)PR ; 116.24 0.00064276 1671920000 810620 992390 923710 809490 1206210 960020 1153720 1184250 845970 1017200 TRUE FALSE FALSE 990939.6224 1108441.378 1265428.768 853710.389 1086115.497 1010285.163 907218.297 893810.8307 1015748.419 763630.7602 1.297668551 1.451541027 1.65712126 1.117962284 1.42230454 1.323002183 1.188032678 1.170475153 1.3301565 1 19.54251569 -7.74614034 0.205632265 0.901959264 1.528141388 0.412246242 0.136966774 3.012166313 0.587703614 0.761723073 0.600091151 1.79E-08 7.74614034 0.626182125 ELIPQES(ph)PR ddPTM_HeLa_A486_30min_R1 2 ELIPQESPR 9 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 ELIPQES(1)PR;ELIPQES(1)PR ; 84.605 0.0051126 1693910000 988320 1135720 982390 377400 1263210 1066170 1231270 1218710 993020 1221720 TRUE FALSE FALSE 919043.8717 1045721.411 1362797.717 878606.2727 1104766.423 934636.7854 923193.223 941236.3373 1079095.773 915793.3599 1.003549394 1.141874856 1.488106135 0.959393583 1.206349021 1.020576067 1.008080276 1.027782444 1.17831797 1 19.80466258 ELISNASDALDK ddPTM_HeLa_A485_30min_R1 2 ELISNASDALDK 12 0 P08238;P14625;Q96GW1;A0A1W2PRR1;F8W026 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin 0 0 ; ; 100.22 0.0087574 52395000 26505 23433 22637 33614 36108 22956.1 29828 26315 24075 45435 FALSE FALSE TRUE 32400.94581 26173.28551 31011.3683 35450.2477 32512.96074 24158.0459 23455.00413 19861.20499 28906.63167 34108.89067 0.949926696 0.767344965 0.909187244 1.03932573 0.953210735 0.708262433 0.687650746 0.582288213 0.84748085 1 15.05786021 -6.262664679 24.98800133 0.734186601 0.920713561 0.280483044 0.122080395 126.1574913 2572755.208 0.041647568 0.038791379 5.46E-07 6.262664679 0.186526961 ELISNASDALDKIR ddPTM_HeLa_A485_30min_R1 1 ELISNASDALDKIR 14 1 P08238;P14625;Q96GW1;A0A1W2PRR1;F8W026 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin 0 0 101.39 0.00077077 179630000 104170 133530 122530 99817 196410 171310 222590 253300 113540 142310 FALSE FALSE TRUE 127342.2571 149145.1719 167858.9459 105269.75 176854.7308 180279.5267 175031.8281 191177.7778 136326.4365 106834.736 1.191955555 1.396036322 1.571201953 0.985351337 1.655404762 1.687461713 1.638341935 1.789472085 1.276049735 1 16.70502127 -5.825078814 24.99999943 1.562773579 1.314326325 0.125018422 0.26000343 107.5813904 42260.88328 0.077252701 0.087596361 1.50E-06 5.825078814 -0.248447254 ELKIDIIPNPQER ddPTM_HeLa_A485_30min_R1 2 ELKIDIIPNPQER 13 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 110.77 0.00098661 49672000 62212 125051 76204 41124 126611 151402 186931 302670 83102 71217 FALSE FALSE TRUE 76050.84477 139674.6267 104395.0307 43370.49999 114005.1643 159329.1746 146991.6648 228439.7079 99779.80914 53463.91255 1.422470619 2.612502901 1.952626094 0.811210739 2.132376005 2.980125603 2.749362285 4.272783211 1.866302042 1 15.7062778 -6.075683024 5.168949415 2.778311903 1.748269358 0.154264684 0.897455359 0.336170598 16.17365977 0.291133893 0.295139857 8.40E-07 6.075683024 -1.030042544 ELKTDS(ph)SPNQAR ddPTM_HeLa_A485_30min_R1 4 ELKTDSSPNQAR 12 1 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 0 ELKT(0.031)DS(0.755)S(0.214)PNQAR;ELKT(0.002)DS(0.499)S(0.499)PNQAR;ELKT(0.075)DS(0.623)S(0.302)PNQAR;ELKT(0.002)DS(0.976)S(0.022)PNQAR ;;; 192.78 1.01E-13 13716470000 2109890 3636330 2268910 1858200 4072000 4228130 5610000 8298500 2445050 2730800 TRUE FALSE FALSE 2579227.751 4061567.162 3108274.226 1959708.761 3666577.382 4449508.349 4411377.671 6263279.863 2935749.108 2050061.817 1.258121941 1.981192532 1.51618561 0.955926668 1.788520401 2.170426429 2.151826659 3.055166343 1.432029553 1 20.96723598 -5.998476958 24.97049344 2.088571533 1.461006544 0.150065823 0.559548778 77.37628803 1268551.159 0.169728522 0.191067001 1.00E-06 5.998476958 -0.627564989 ELKTDS(ph)SPNQAR ddPTM_HeLa_A486_30min_R1 8 ELKTDSSPNQAR 12 1 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 0 ELKT(0.018)DS(0.888)S(0.094)PNQAR;ELKT(0.015)DS(0.874)S(0.111)PNQAR;ELKT(0.001)DS(0.758)S(0.241)PNQAR;ELKT(0.006)DS(0.871)S(0.124)PNQAR;ELKT(0.002)DS(0.499)S(0.499)PNQAR;ELKT(0.002)DS(0.499)S(0.499)PNQAR;ELKT(0.003)DS(0.636)S(0.36)PNQAR;ELKT(0.005)DS(0.498)S(0.498)PNQAR ;;;;;;; 133.87 9.69E-06 17191850000 8452870 5865540 4225170 3621070 8230740 5549640 9089460 9334850 3788220 9659730 TRUE FALSE FALSE 7860367.464 5400733.248 5861268.978 8430033.959 7198363.841 4864981.841 6815180.969 7209508.433 4116585.96 7240870.734 1.085555557 0.745867928 0.809470186 1.164229313 0.994129588 0.671878013 0.941210142 0.995668711 0.568520847 1 22.78773176 ELKTDSS(ph)PNQAR ddPTM_HeLa_A485_30min_R1 4 ELKTDSSPNQAR 12 1 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 0 ELKT(0.009)DS(0.089)S(0.901)PNQAR;ELKT(0.331)DS(0.077)S(0.591)PNQAR;ELKTDS(0.194)S(0.806)PNQAR;ELKT(0.002)DS(0.223)S(0.776)PNQAR ;;; 150.37 6.15E-08 5263790000 2186140 3596370 2333740 1971700 3818700 4298980 5618610 8345600 2565150 3027600 TRUE FALSE FALSE 2672439.301 4016934.187 3197087.541 2079408.978 3438496.82 4524067.945 4418148.074 6298828.515 3079952.076 2272875.039 1.175796846 1.767336135 1.406627063 0.914880468 1.51284024 1.990460482 1.943858768 2.771304364 1.355090809 1 21.11608694 -6.143958499 4.402500056 1.929640646 1.341208854 0.170524622 0.480404516 0.331835856 10.48004664 0.15777074 0.158196191 7.18E-07 6.143958499 -0.588431792 ELLCQLLTSLHHFVGEGESKR ddPTM_HeLa_A485_30min_R1 1 ELLCQLLTSLHHFVGEGESKR 21 1 Q9NU22 Q9NU22 MDN1 Midasin 0 0 147.53 1.78E-12 3703500 5237.7 9664.2 7695.4 2634.7 11555 5460 9249 11203 7062.1 5864.5 FALSE FALSE TRUE 6402.808295 10794.34412 10542.24869 2778.62699 10404.54363 5745.877157 7272.875593 8455.446684 8479.398693 4402.588078 1.454328268 2.45181787 2.394557134 0.631134901 2.363278927 1.305113505 1.651954592 1.920562754 1.926003192 1 12.10413615 ELLDT(ph)SFEDLSKPK ddPTM_HeLa_A486_30min_R1 2 ELLDTSFEDLSKPK 14 1 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 1 0 ELLDT(0.5)S(0.5)FEDLSKPK;ELLDT(0.5)S(0.5)FEDLS(0.001)KPK ; 116.96 0.00017428 221270000 310880 273447 108733 196187 205715 284472 392361 349618 203994 543300 TRUE FALSE FALSE 289088.9174 251778.0638 150837.3296 456733.2507 179912.3065 249376.7369 294188.1278 270017.6135 221676.3642 407254.1437 0.709848928 0.618233277 0.370376415 1.121494423 0.441769124 0.612336893 0.722369882 0.663019929 0.544319481 1 18.63556985 -11.15503472 2.412865587 1.837908024 0.64590897 0.236599676 0.191367087 13563239.1 3203557.629 62218879.84 0.046757707 7.00E-12 11.15503472 -1.191999054 ELLDTS(ph)FEDLSKPK ddPTM_HeLa_A485_30min_R1 4 ELLDTSFEDLSKPK 14 1 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 1 0 ELLDT(0.197)S(0.803)FEDLSKPK;ELLDT(0.159)S(0.841)FEDLSKPK;ELLDT(0.022)S(0.978)FEDLSKPK;ELLDT(0.178)S(0.822)FEDLSKPK ;;; 218.66 5.84E-28 1094555000 2016810 1444740 741531 2954070 1473820 1674840 2701930 2503500 1229300 4192590 TRUE FALSE FALSE 2465442.427 1613689.775 1015854.175 3115443.364 1327081.306 1762532.033 2124640.583 1889512.7 1476009.234 3147454.472 0.783313134 0.512696781 0.322754208 0.989829525 0.421636379 0.559986506 0.675034572 0.600330431 0.468953323 1 21.58575408 -10.45532446 5.544678718 1.000390774 0.59076097 0.31415468 0.180508892 0.000836268 8.21E-05 0.167620418 0.04061616 3.50E-11 10.45532446 -0.409629805 ELLDTS(ph)FEDLSKPK ddPTM_HeLa_A486_30min_R1 2 ELLDTSFEDLSKPK 14 1 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 1 0 ELLDT(0.012)S(0.988)FEDLSKPK;ELLDT(0.018)S(0.982)FEDLSKPK ; 221.31 4.83E-28 878860000 1906920 1745460 546650 1017400 1123410 1977810 2497300 2230400 1230560 3487400 TRUE FALSE FALSE 1773254.755 1607143.393 758327.5198 2368558.617 982501.4424 1733807.911 1872449.126 1722586.609 1337225.932 2614132.341 0.678333965 0.614790371 0.290087655 0.906059184 0.375842274 0.663244123 0.716279393 0.65895157 0.511537198 1 21.31790075 -14 0.352314353 5.648405745 0.59007654 0.336953206 0.166461028 505.0195728 4.127000189 1774.696935 0.121651104 1.00E-14 14 -5.058329205 ELLELGIDNEDS(ph)EHENDDDTNQSATLNDKDDDSLPAETGQNHPFFR ddPTM_HeLa_A485_30min_R1 1 ELLELGIDNEDSEHENDDDTNQSATLNDKDDDSLPAETGQNHPFFR 46 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 ELLELGIDNEDS(1)EHENDDDTNQSATLNDKDDDSLPAETGQNHPFFR 177.91 4.36E-18 603470000 26747 27704 22152 37906 30661 28594 41842 47472 28104 57125 TRUE FALSE FALSE 32696.77787 30943.74181 30346.94662 39976.7088 27608.28318 30091.13763 32902.11488 35829.41757 33744.21501 42884.78881 0.762432993 0.721555187 0.707638943 0.932188543 0.643777991 0.701673914 0.767221101 0.835480798 0.786857437 1 15.3881784 -8.529347076 0.750367948 1.002502366 0.747261185 0.500244695 0.073519635 1.519280298 1.379730123 0.082475606 0.026650319 2.96E-09 8.529347076 -0.255241181 ELLELGIDNEDS(ph)EHENDDDTNQSATLNDKDDDSLPAETGQNHPFFR ddPTM_HeLa_A486_30min_R1 1 ELLELGIDNEDSEHENDDDTNQSATLNDKDDDSLPAETGQNHPFFR 46 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 ELLELGIDNEDS(0.918)EHENDDDT(0.034)NQS(0.034)AT(0.01)LNDKDDDS(0.002)LPAET(0.001)GQNHPFFR 52.037 0.0056452 592360000 8401.8 10502 7235.8 4607.5 10109 10039 15033 11920 6489.4 13508 TRUE FALSE FALSE 7812.877207 9669.783272 10037.69554 10726.49285 8841.034957 8800.490249 11271.5844 9206.076212 7051.906417 10125.50888 0.771603413 0.954992326 0.991327514 1.059353459 0.873144754 0.86914054 1.113186955 0.909196399 0.696449581 1 13.30570679 -9.662348722 5.153507991 1.000000002 0.926044905 0.03707731 0.118650614 51649647.97 2.399623192 5.815860308 0.028978211 2.18E-10 9.662348722 -0.073955097 ELLGLS(ph)DEGGPKS(ph)EGAPK ddPTM_HeLa_A485_30min_R1 1 ELLGLSDEGGPKSEGAPK 18 1 Q5VVW2-4;Q5VVW2-5;Q5VVW2 Q5VVW2-4 GARNL3 GTPase-activating Rap/Ran-GAP domain-like protein 3 2 0 ELLGLS(1)DEGGPKS(1)EGAPK 46.578 0.0073211 0 53474 72927 62674 27189 61103 102560 67019 106610 79419 27446 TRUE FALSE FALSE 65369.10682 81455.17827 85859.72068 28674.26622 55019.37077 107929.883 52699.84316 80463.73034 95357.66483 20604.21731 3.172608105 3.953325528 4.167094503 1.391669763 2.670296569 5.238242317 2.557721187 3.905206839 4.628065381 1 14.33065204 ELLHSVHPES(ph)PNLK ddPTM_HeLa_A485_30min_R1 4 ELLHSVHPESPNLK 14 0 Q9Y217 Q9Y217 MTMR6 Myotubularin-related protein 6 1 0 ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK ;;; 243.04 1.43E-35 2737650000 450537 591826 504558 285198 716006 513022 662121 715739 505259 611045 TRUE FALSE FALSE 550757.4013 661034.9025 691215.0006 300777.6446 644717.9286 539883.0386 520653.4393 540202.888 606659.8468 458722.7269 1.200632471 1.441033687 1.506825278 0.655685073 1.405463237 1.176926729 1.135006854 1.17762399 1.322497908 1 18.80726286 ELLHSVHPES(ph)PNLK ddPTM_HeLa_A486_30min_R1 4 ELLHSVHPESPNLK 14 0 Q9Y217 Q9Y217 MTMR6 Myotubularin-related protein 6 1 0 ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK ;;; 266.45 2.95E-42 2247030000 884180 817160 569200 46712.3 841450 704210 851780 761470 687630 526300 TRUE FALSE FALSE 822203.5479 752405.2656 789609.4837 108748.5951 735907.4948 617331.7301 638655.6348 588099.9038 747234.3221 394511.0544 2.084107755 1.90718424 2.001488868 0.275654114 1.865365968 1.564802109 1.618853585 1.490705767 1.89407702 1 18.5897062 ELLKPNASVALHK ddPTM_HeLa_A486_30min_R1 2 ELLKPNASVALHK 13 1 P43686-2;P43686 P43686-2 PSMC4 26S protease regulatory subunit 6B 0 0 ; ; 89.231 0.0064173 26050000 62191 71977 43794 13211.6 76174 69021 71164 69793 62782 66117 FALSE FALSE TRUE 57831.73205 66273.28038 60752.20964 30757.27248 66619.54663 60505.89077 53358.0145 53902.65747 68223.99431 49560.87285 1.16688284 1.337209709 1.225809921 0.620595859 1.344196395 1.220839894 1.076615714 1.087605088 1.376569668 1 15.59691398 -9.690570151 0.009371903 1.47E-05 2.212266307 0.01683279 0.209636854 39891.10168 80.77666334 10003.55219 9073.154467 2.04E-10 9.690570151 2.212251626 ELLPLIYHHLLR ddPTM_HeLa_A485_30min_R1 2 ELLPLIYHHLLR 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;A0A2R8Y4M7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 0 ; ; 86.313 0.0071349 38769000 39483 55780 56390 37336 58994 52758 62049 68877 41809 51960 FALSE FALSE TRUE 48265.85714 62302.98578 77251.00758 39375.57114 53120.35022 55520.3273 48791.72426 51984.80776 50199.68281 39007.32825 1.237353577 1.597212333 1.980422937 1.009440351 1.361804374 1.423330686 1.250834816 1.33269337 1.286929535 1 15.25145757 -8.264214525 0.162987338 0.775661635 1.669269678 0.245970336 0.234503231 10.8055963 1.046141827 3.115931287 1.792219617 5.44E-09 8.264214525 0.893608043 ELLPLIYHHLLR ddPTM_HeLa_A486_30min_R1 2 ELLPLIYHHLLR 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;A0A2R8Y4M7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 0 ; ; 76.533 0.015761 39598000 47754 60454 53738 17693.3 70301 50095 60640 56782 47920 55731 FALSE FALSE TRUE 44406.6912 55663.40487 74546.79275 41190.89657 61483.19305 43914.78823 45467.23062 43853.97814 52073.74418 41775.59485 1.062981661 1.332438355 1.78445796 0.986003831 1.471749074 1.051206772 1.088368239 1.049751136 1.246511136 1 15.35037275 -6.276620886 24.47592798 1.090351933 1.334210713 0.241733096 0.212647515 929.1654944 1498014.5 0.074008815 0.065541666 5.29E-07 6.276620886 0.24385878 ELLS(ph)PGVK ddPTM_HeLa_A485_30min_R1 3 ELLSPGVK 8 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 ELLS(1)PGVK;ELLS(1)PGVK;ELLS(1)PGVK ;; 126.71 0.00059522 127523000 399720 420440 342390 552380 569370 453480 571780 553650 400130 701810 TRUE FALSE FALSE 488636.335 469606.8007 469054.309 582555.1207 512681.5236 477223.5116 449614.532 417866.4694 480432.4208 526861.6829 0.927447091 0.891328438 0.890279791 1.105707892 0.973085613 0.905785194 0.853382485 0.793123666 0.911875804 1 19.00706473 -6.462727513 4.209562446 0.87281608 0.957806904 0.143979401 0.075164331 0.37418727 13.31139202 0.029231703 0.024763104 3.45E-07 6.462727513 0.084990824 ELLS(ph)PGVK ddPTM_HeLa_A486_30min_R1 2 ELLSPGVK 8 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 ELLS(1)PGVK;ELLS(1)PGVK ; 123.51 0.00063545 103529000 254153 263415 175145 118325 263631 283654 324964 329046 200505 345799 TRUE FALSE FALSE 236338.1871 242541.0361 242965.8345 275466.5798 230563.9417 248659.6535 243654.5701 254129.4088 217884.9348 259208.6796 0.91176803 0.935697973 0.937336801 1.06272128 0.889491594 0.959302959 0.939993871 0.980404704 0.840577311 1 17.9837545 -5.314046581 0.001913697 1.889103937 4.15E-08 0.013314599 0.057574897 1329848.911 586.3251077 286705.7757 292092.8085 4.85E-06 5.314046581 -1.889103896 ELLS(ph)PLS(ph)EPDDRYPLIVK ddPTM_HeLa_A485_30min_R1 1 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 2 0 ELLS(1)PLS(1)EPDDRYPLIVK 62.684 0.019383 13885000 61675 67838 52693 53975 65808 66433 73626 76717 52001 67581 TRUE FALSE FALSE 75394.39097 75771.06399 72186.33344 56923.51758 59255.92445 69911.32916 57895.20363 57902.03546 62437.12372 50734.30044 1.486063478 1.493487903 1.422830961 1.121992756 1.167965734 1.377989418 1.141145204 1.141279863 1.230668861 1 15.63067383 -1 0.223450312 1.066780185 3.647386464 0.657846692 0.0961556 32.77972856 0.422365243 0.154568977 30.66634541 0.1 1 2.580606278 ELLS(ph)PLS(ph)EPDDRYPLIVK ddPTM_HeLa_A486_30min_R1 1 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 2 0 ELLS(1)PLS(1)EPDDRYPLIVK 72.145 0.0065626 17106000 47112 48758 29435 19252 50633 47830 53038 57649 36991 55233 TRUE FALSE FALSE 43809.69209 44894.23851 40833.0203 44819.62894 44282.13701 41929.2209 39767.33142 44523.58117 40197.40966 41402.29729 1.058146406 1.084341726 0.986250111 1.082539663 1.069557486 1.012726917 0.960510262 1.075389147 0.970898049 1 15.3374232 -6.341171931 6.058970754 1.005364302 1.055225115 0.317226904 0.038371771 0.313423749 19.01697541 0.013339724 0.01174903 4.56E-07 6.341171931 0.049860813 ELLS(ph)PLSEPDDRYPLIVK ddPTM_HeLa_A485_30min_R1 1 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 ELLS(0.768)PLS(0.232)EPDDRYPLIVK 198.14 1.97E-25 180510000 203800 245420 225870 242110 288980 281040 321490 321160 204830 286910 TRUE FALSE FALSE 249134.6069 274119.7341 309428.7122 255335.8562 260208.1365 295754.8198 252801.0352 242395.0064 245937.5022 215388.6172 1.156674898 1.27267512 1.436606615 1.185465878 1.208086759 1.373121865 1.173697285 1.125384478 1.141831474 1 17.71658248 -7.647539192 0.866610382 1.010420537 1.274810241 0.497985024 0.084577032 0.47364006 0.729283297 0.081469891 0.030977913 2.25E-08 7.647539192 0.264389704 ELLS(ph)PLSEPDDRYPLIVK ddPTM_HeLa_A486_30min_R1 3 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 ELLS(0.837)PLS(0.163)EPDDRYPLIVK;ELLS(0.794)PLS(0.206)EPDDRYPLIVK;ELLS(0.95)PLS(0.05)EPDDRYPLIVK ;; 280.62 1.41E-69 2238460000 1589090 1699020 1138330 597445 1624440 1642310 1832220 1763040 1381290 1864710 TRUE FALSE FALSE 1477702.997 1564383.467 1579121.862 1390882.153 1420687.588 1439698.49 1373779.177 1361634.279 1501021.329 1397774.479 1.0571827 1.119195901 1.129740087 0.995069072 1.016392565 1.029993402 0.982833209 0.97414447 1.073865171 1 20.41470018 -5.265825982 24.99675892 1.009177386 1.103755198 0.639261972 0.031554863 219.9319694 1253269.202 0.008739418 0.013489501 5.42E-06 5.265825982 0.094577812 ELLSPLS(ph)EPDDRYPLIVK ddPTM_HeLa_A485_30min_R1 3 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 ELLS(0.074)PLS(0.926)EPDDRYPLIVK;ELLSPLS(1)EPDDRYPLIVK;ELLS(0.334)PLS(0.666)EPDDRYPLIVK ;; 253.83 5.96E-58 2327800000 746513 924801 828295 882120 1022656 970438 1300867 1366264 881548 1220021 TRUE FALSE FALSE 912572.2414 1032948.432 1134715.789 930307.982 920836.7779 1021248.633 1022926.138 1031185.612 1058466.598 915892.2175 0.996375145 1.127805666 1.238918474 1.015739586 1.005398627 1.115031456 1.116863009 1.125880963 1.155667203 1 19.80481831 ELLSPLS(ph)EPDDRYPLIVK ddPTM_HeLa_A486_30min_R1 2 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 ELLSPLS(1)EPDDRYPLIVK;ELLS(0.201)PLS(0.799)EPDDRYPLIVK ; 243.23 9.40E-46 311980000 315680 353580 250650 142418 329160 334280 411760 399120 302910 407540 TRUE FALSE FALSE 293552.4622 325561.0331 347708.3926 331556.3014 287873.6835 293039.9323 308733.2928 308249.0887 329166.4827 305489.3314 0.960925414 1.065703446 1.138201426 1.085328577 0.942336291 0.95924768 1.010618903 1.009033891 1.077505657 1 18.22076247 -5.739166105 24.99865775 0.99875637 1.068170122 0.250337914 0.052820285 337.2814867 378550.0252 0.016598768 0.021412223 1.82E-06 5.739166105 0.069413752 ELLTSDS(ph)PPHNDIMTPVDPGVAQPNSR ddPTM_HeLa_A486_30min_R1 1 ELLTSDSPPHNDIMTPVDPGVAQPNSR 27 0 Q12778 Q12778 FOXO1 Forkhead box protein O1 1 0 ELLT(0.143)S(0.126)DS(0.732)PPHNDIMTPVDPGVAQPNSR 104.9 0.00039949 68491000 71334 58946 53925 17499 64963 57942 69227 75692 56854 73365 TRUE FALSE FALSE 66333.85497 54274.90428 74806.20416 40738.55635 56814.73478 50793.70515 51905.67239 58458.58394 61782.1505 54993.92647 1.206203289 0.986925425 1.360263014 0.740782828 1.033109262 0.923623906 0.943843725 1.063000729 1.123435886 1 15.74698468 -5.253801389 24.99842535 0.976956942 1.164710036 0.356083522 0.127997213 718.7741781 2352474.089 0.034124208 0.057693595 5.57E-06 5.253801389 0.187753094 ELLTTMGDRFT(ph)DEEVDELYR ddPTM_HeLa_A485_30min_R1 3 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 1 0 ELLT(0.003)T(0.012)MGDRFT(0.986)DEEVDELYR;ELLTTMGDRFT(1)DEEVDELYR;ELLTTMGDRFT(1)DEEVDELYR ;; 206.94 2.04E-26 583622000 205888 279657 299087 217084 336734 277382 343824 354364 253914 292927 TRUE FALSE FALSE 251687.0753 312360.4535 409731.7273 228942.7492 303207.5806 291905.2926 270363.1936 267455.6734 304872.2108 219905.6898 1.144522797 1.420429156 1.863215671 1.04109516 1.378807346 1.327411277 1.229450651 1.216228983 1.386377092 1 17.74652541 -12.24884808 0.15402509 0.298326869 1.460290129 0.19385395 0.208513883 115.9933953 1.733743343 27.30869343 1.090075447 5.64E-13 12.24884808 1.161963261 ELLTTMGDRFT(ph)DEEVDELYR ddPTM_HeLa_A486_30min_R1 4 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 1 0 ELLT(0.004)T(0.004)MGDRFT(0.992)DEEVDELYR;ELLT(0.005)T(0.012)MGDRFT(0.983)DEEVDELYR;ELLTTMGDRFT(1)DEEVDELYR;ELLTTMGDRFT(1)DEEVDELYR ;;; 178.39 8.53E-16 603556000 172281 221134 210252 83792.5 274367 199678 232957 248964 176805 213418 TRUE FALSE FALSE 160204.9916 203610.5365 291667.2051 195073.1746 239953.3325 175043.7585 174668.6946 192280.332 192130.5998 159976.7437 1.001426757 1.27275085 1.823185036 1.219384581 1.499926345 1.094182532 1.091838042 1.201926778 1.200990815 1 17.28750267 -6.274844024 24.58001969 1.12878619 1.375852289 0.262071428 0.205065606 935.8099013 1715983.356 0.07369437 0.065385353 5.31E-07 6.274844024 0.247066098 ELLTTMGDRFTDEEVDELYR ddPTM_HeLa_A485_30min_R1 2 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ; ; 216.96 3.94E-35 118613000 31668.9 55892 56455 30922.1 69055 62654 72348 94202 49248 52635 FALSE FALSE TRUE 38713.53755 62428.0832 77340.05379 32611.29602 62179.64173 65934.46656 56890.25877 71098.8118 59131.62187 39514.06318 0.979740741 1.579895313 1.957279196 0.825308597 1.573607894 1.668632919 1.439747123 1.799329304 1.496470297 1 15.27007858 ELLTTMGDRFTDEEVDELYR ddPTM_HeLa_A486_30min_R1 1 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 108.45 4.02E-05 35313000 11872 13907 13317 5215.8 23754 14156 19532 19110 10520 14664 FALSE FALSE TRUE 11039.83411 12804.95867 18473.69904 12142.64599 20774.55182 12409.57665 14644.88701 14759.07017 11431.88207 10992.03895 1.004348161 1.164930249 1.68064352 1.104676397 1.889963446 1.128960396 1.332317605 1.34270541 1.040014698 1 13.4241714 -7.783410174 5.138216372 1.006911807 1.34241275 0.188830513 0.257397854 0.292571021 20.00313447 0.223442052 0.063370582 1.65E-08 7.783410174 0.335500943 ELNFVTDSVEQELPSS(ph)PKQPICFDR ddPTM_HeLa_A485_30min_R1 1 ELNFVTDSVEQELPSSPKQPICFDR 25 1 B4DP81;Q8TAP6-2;Q8TAP6 B4DP81 CEP76 Centrosomal protein of 76 kDa 1 0 ELNFVTDSVEQELPS(0.161)S(0.839)PKQPICFDR 150.98 1.42E-09 110540000 86152 86115 71965 116760 108590 103120 137340 134660 84656 150720 TRUE FALSE FALSE 105316.2152 96185.40015 98587.84821 123138.3031 97778.39832 108519.2037 107996.187 101634.4239 101645.6827 113148.2778 0.930780541 0.850082759 0.8713155 1.088291449 0.864161614 0.959088427 0.954466026 0.898241015 0.89834052 1 16.7878551 ELNFVTDSVEQELPSS(ph)PKQPICFDR ddPTM_HeLa_A486_30min_R1 2 ELNFVTDSVEQELPSSPKQPICFDR 25 1 B4DP81;Q8TAP6-2;Q8TAP6 B4DP81 CEP76 Centrosomal protein of 76 kDa 1 0 ELNFVTDSVEQELPS(0.194)S(0.806)PKQPICFDR;ELNFVTDSVEQELPS(0.254)S(0.746)PKQPICFDR ; 136.49 1.13E-06 341780000 193111 199283 132409 103963 205238 239711 291134 277937 182251 311355 TRUE FALSE FALSE 179574.9161 183491.0893 183681.3108 242031.118 179495.1363 210137.894 218289.1939 214656.8124 198048.6634 233389.6814 0.769420975 0.786200522 0.78701556 1.037025787 0.769079143 0.900373542 0.93529925 0.919735659 0.848575062 1 17.83238125 -1.55512306 0.255819426 0.94543556 1.72E-31 0.357610292 0.074693202 44.37949522 0.783754075 0.093661067 17.19542947 0.027853318 1.55512306 -0.94543556 ELNITAAK ddPTM_HeLa_A485_30min_R1 2 ELNITAAK 8 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 0 ; ; 128 0.0032926 236890000 202613 240270 202523 222140 292310 270010 320510 354700 227740 335260 FALSE FALSE TRUE 247683.5628 268367.4864 277444.6854 234274.9457 263206.59 284147.3061 252030.4202 267709.2689 273445.329 251685.852 0.984098077 1.066279587 1.102345178 0.930822864 1.045774278 1.128976078 1.001369041 1.063664353 1.086454907 1 17.9412646 -5.993282604 24.98299173 1.060065391 1.024741203 0.07915485 0.055435987 469.5786529 1746421.859 0.017259422 0.019516488 1.02E-06 5.993282604 -0.035324189 ELNITAAK ddPTM_HeLa_A486_30min_R1 1 ELNITAAK 8 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 0 107.15 0.014285 35075000 15434 21080 22508 8239.5 26287 20032 23676 22120 18201 21068 FALSE FALSE TRUE 14352.1563 19409.54403 31223.70039 19181.9724 22989.83934 17560.65551 17752.01438 17083.75888 19778.67733 15792.43567 0.908799415 1.229040563 1.97713013 1.214630397 1.455750071 1.111966253 1.124083375 1.081768464 1.252414621 1 13.94694608 -6.271903361 23.72617263 1.119784339 1.376491823 0.179136711 0.258300085 650.7549539 1475524.384 0.093419487 0.083368007 5.35E-07 6.271903361 0.256707484 ELNS(ph)NHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A485_30min_R1 3 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.333)NHDGADET(0.333)S(0.333)EKEQQEAIEHIDEVQNEIDR;ELNS(0.408)NHDGADET(0.296)S(0.296)EKEQQEAIEHIDEVQNEIDR;ELNS(0.333)NHDGADET(0.333)S(0.333)EKEQQEAIEHIDEVQNEIDR ;; 114.03 2.24E-05 1731840000 381355 306493 218006 317529 206044 479214 303688 371111 344376 256934 TRUE FALSE FALSE 466186.1041 342334.6902 298655.4914 334874.8052 185529.5359 504304.904 238802.5779 280095.4454 413489.1044 192885.0823 2.416911139 1.774811645 1.548359717 1.736136363 0.961865654 2.614535546 1.23805623 1.452136381 2.143707017 1 17.55738204 -11.63161101 0.227551154 3.37E-39 1.839599045 0.172156476 0.48874705 89.86559982 2.350377079 48.06006778 0.915660022 2.34E-12 11.63161101 1.839599045 ELNS(ph)NHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A486_30min_R1 3 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.333)NHDGADET(0.333)S(0.333)EKEQQEAIEHIDEVQNEIDR;ELNS(0.333)NHDGADET(0.333)S(0.333)EKEQQEAIEHIDEVQNEIDR;ELNS(0.333)NHDGADET(0.333)S(0.333)EKEQQEAIEHIDEVQNEIDR ;; 81.204 0.00019996 2395070000 135360 192023 106030 17113.5 149106 190920 112454 143693 126254 103560 TRUE FALSE FALSE 125871.963 176806.3981 147087.6556 39841.09287 130403.7351 167366.2315 84316.81978 110977.2407 137197.7984 77627.90194 1.621478358 2.277614024 1.894778191 0.513231607 1.679856493 2.156006118 1.086166413 1.429605051 1.767377386 1 16.24428768 -1 0.045268575 2.66E-12 4.267514165 0.132598478 0.483154959 1345.543421 4.628172036 110.4431883 417.3998412 0.1 1 4.267514165 ELNS(ph)NHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_A485_30min_R1 3 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.38)NHDGADET(0.31)S(0.31)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.683)NHDGADET(0.158)S(0.158)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.376)NHDGADET(0.312)S(0.312)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK ;; 86.891 1.69E-05 1195249000 169630.2 143312.8 93708.4 156760.5 212868.5 194131.1 294722.8 305649 170149.4 293896.6 TRUE FALSE FALSE 207363.8528 160071.9853 128375.0367 165323.9292 191674.5647 204295.5042 231752.8661 230688.1035 204296.8239 220633.5864 0.939856239 0.725510508 0.58184721 0.749314426 0.868746086 0.925949252 1.05039704 1.045571109 0.925955233 1 17.7512929 -6.111014176 1.890202053 1.004716731 0.736062497 0.62029601 0.088998983 0.228540874 1.620515835 0.036326793 0.036953294 7.74E-07 6.111014176 -0.268654234 ELNS(ph)NHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_A486_30min_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.379)NHDGADET(0.311)S(0.311)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK 129.26 2.04E-08 2069000000 429280 363160 185550 82087 337050 467610 564130 513830 306830 490310 TRUE FALSE FALSE 399189.6888 334381.879 257399.9292 191102.6844 294774.0461 409921.0325 422978.7072 396842.1258 333426.2714 367533.1846 1.08613237 0.909800511 0.700344731 0.519960353 0.802033826 1.115330669 1.150858548 1.07974502 0.907200453 1 18.48751499 -6.251384065 21.71875452 1.061875473 0.788051039 0.403941127 0.149091803 123.3918364 266516.3712 0.054482283 0.053687298 5.61E-07 6.251384065 -0.273824434 ELNSNHDGADET(ph)SEK ddPTM_HeLa_A486_30min_R1 1 ELNSNHDGADETSEK 15 0 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.652)S(0.348)EK 205.68 2.27E-25 650320000 1995500 1641900 700030 133910 887780 1215400 1457000 1146000 1315300 1770500 TRUE FALSE FALSE 1855625.755 1511789.864 971100.3635 311749.2474 776426.3542 1065456.305 1092443.189 885080.817 1429311.263 1327155.276 1.398197926 1.139120562 0.731715709 0.234900356 0.58503053 0.802812093 0.823146477 0.666900726 1.076973651 1 20.33990574 -4.630414742 3.208006763 0.708796426 1.35682347 0.490523934 0.220807209 0.200212711 3.914267244 0.061021436 0.209362466 2.34E-05 4.630414742 0.648027044 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A485_30min_R1 3 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.576)S(0.424)EKEQQEAIEHIDEVQNEIDR;ELNS(0.042)NHDGADET(0.479)S(0.479)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR ;; 92.435 0.00050447 4427400000 192325 190636 150863 244875 228930 159566 257287 221931 165525 342960 TRUE FALSE FALSE 235107.0327 212929.2219 206673.5016 258251.9012 206136.9254 167920.629 202315.5306 167502.0743 198744.3492 257466.3837 0.913156232 0.827017566 0.802720334 1.003050952 0.800636271 0.652204092 0.785793965 0.650578424 0.771923489 1 17.97402455 -5.992856638 24.97708671 0.748372918 0.879453788 0.195445326 0.104466766 233.2917813 815707.9849 0.03064532 0.034673654 1.02E-06 5.992856638 0.13108087 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A486_30min_R1 6 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.584)S(0.416)EKEQQEAIEHIDEVQNEIDR;ELNS(0.277)NHDGADET(0.361)S(0.361)EKEQQEAIEHIDEVQNEIDR;ELNS(0.065)NHDGADET(0.468)S(0.468)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR;ELNS(0.28)NHDGADET(0.36)S(0.36)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.574)S(0.426)EKEQQEAIEHIDEVQNEIDR ;;;;; 209.83 7.96E-29 7806360000 1599100 1863644 1114122 197683 1423443 1860118 1674317 1691656 1497199 1365169 TRUE FALSE FALSE 1487011.348 1715962.062 1545539.876 460216.0143 1244901.506 1630635.553 1255385.177 1306502.857 1626977.415 1023321.797 1.453121934 1.676854796 1.510316579 0.44972756 1.216529844 1.593472902 1.22677459 1.276727283 1.589898134 1 19.96482846 -5.027737823 24.99945719 1.20511308 1.572138107 0.21836003 0.306988622 1084.447778 977387.7631 0.086832131 0.150876714 9.38E-06 5.027737823 0.367025027 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_A485_30min_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.007)NHDGADET(0.496)S(0.496)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.107)NHDGADET(0.446)S(0.446)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK ; 154.31 1.08E-11 1304120000 146075 114232 89527 157099 181867 148868 269476 261865 138821 261394 TRUE FALSE FALSE 178568.8798 127590.4387 122646.7628 165680.9206 163759.6829 156662.4983 211900.2512 197642.1982 166681.1014 196233.2864 0.909982619 0.650197737 0.625004886 0.844305895 0.834515315 0.798348237 1.079838467 1.00717978 0.849402792 1 17.58221026 -6.28658761 1.319021847 0.979496003 0.738468632 0.473786882 0.101592426 0.375699343 1.325577104 0.050412359 0.044507326 5.17E-07 6.28658761 -0.241027371 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_A486_30min_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.001)NHDGADET(0.499)S(0.499)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK;ELNS(0.146)NHDGADET(0.427)S(0.427)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK ; 118.07 2.21E-07 760330000 49726 53715 26489 9782.1 50649 51644 76411 71358 38174 66040 TRUE FALSE FALSE 46240.46419 49458.42777 36746.2502 22773.22316 44296.13014 45272.68836 57292.15961 55111.34113 41482.95306 49503.15415 0.934091271 0.999096494 0.742301189 0.460035801 0.894814298 0.91454149 1.15734362 1.113289488 0.837986059 1 15.59523283 -6.341282939 2.812637847 1.033765714 0.790539902 0.299428212 0.157688923 0.358617269 5.552393574 0.065400208 0.057604179 4.56E-07 6.341282939 -0.243225812 ELNSNHDGADETS(ph)EK ddPTM_HeLa_A485_30min_R1 2 ELNSNHDGADETSEK 15 0 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.033)S(0.967)EK;ELNSNHDGADET(0.072)S(0.928)EK ; 194.7 9.91E-19 1498070000 2068250 2654620 1435620 1530310 1701010 1738470 2364950 2090220 1433110 2442900 TRUE FALSE FALSE 2528325.077 2965054.717 1966715.579 1613906.96 1531651.472 1829493.601 1859659.113 1577590.268 1720722.032 1833929.988 1.378637731 1.616776396 1.07240494 0.880026484 0.835174451 0.99758094 1.014029502 0.860223824 0.938270295 1 20.80650713 -4.886893112 4.562389057 0.931483662 1.493930572 0.884499926 0.08034877 0.058737754 2.056533752 0.02114313 0.046905429 1.30E-05 4.886893112 0.56244691 ELNSNHDGADETS(ph)EK ddPTM_HeLa_A486_30min_R1 1 ELNSNHDGADETSEK 15 0 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.042)S(0.958)EK 129.51 1.47E-05 617260000 895120 695700 286250 68306 415330 578410 679380 534690 576520 835330 TRUE FALSE FALSE 832376.7104 640570.1983 397093.666 159019.82 363235.4386 507051.655 509391.9383 412952.7592 626493.2178 626157.9309 1.329339883 1.023016984 0.634174936 0.253961201 0.580101953 0.809782373 0.813519901 0.659502561 1.000535467 1 19.25616706 -4.532463588 3.187742175 0.692999593 1.303135671 0.462427143 0.207780003 0.222237066 4.403081271 0.057424218 0.242845013 2.93E-05 4.532463588 0.610136078 ELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A485_30min_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.107)S(0.893)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.26)S(0.74)EKEQQEAIEHIDEVQNEIDR ; 402.37 1.19E-218 4004500000 292483 336569 225120 302199 320596 239118 351740 264096 279492 473560 TRUE FALSE FALSE 357544.8343 375927.8168 308401.256 318707.3662 288676.3366 251637.8487 276587.8755 199326.0419 335583.4807 355510.2072 1.005723119 1.057431852 0.867489174 0.896478806 0.812005762 0.707821727 0.778002628 0.560676003 0.943948933 1 18.43953146 -5.145320052 1.126512671 0.771570397 1.045721338 0.319974905 0.119484482 0.589751991 1.354908963 0.04087997 0.133975946 7.16E-06 5.145320052 0.27415094 ELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A486_30min_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.192)S(0.808)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.372)S(0.628)EKEQQEAIEHIDEVQNEIDR ; 296.58 5.08E-93 6565000000 187009 185963 102318 10170.1 159901 186415 190255 176723 152305 177723 TRUE FALSE FALSE 173900.6348 171226.6146 141938.2698 23676.50677 139844.7256 163417.0126 142651.1867 136487.0307 165506.92 133220.004 1.305364281 1.285292069 1.065442617 0.177724862 1.049727679 1.226670227 1.070794043 1.024523545 1.242357867 1 17.0234512 -5.991293673 24.99065673 1.114708589 0.942478832 0.054526354 0.300204119 661.1122965 1897643.442 0.101554729 0.114982803 1.02E-06 5.991293673 -0.172229757 ELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_A486_30min_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.027)NHDGADET(0.208)S(0.765)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK 160.36 3.27E-16 1739200000 599480 496900 266730 43441 515810 591810 913050 728270 432660 681830 TRUE FALSE FALSE 557459.5477 457523.8343 370014.9993 101132.8434 451112.3001 518798.4993 684595.2327 562458.819 470163.3172 511095.33 1.090715401 0.895182968 0.723964743 0.197874716 0.882638274 1.015071883 1.339466813 1.100496886 0.919913154 1 18.96323288 -6.002836551 24.98568116 1.081251161 0.713929669 0.330849651 0.233514621 140.9157844 1241270.627 0.079260531 0.088263114 9.93E-07 6.002836551 -0.367321491 ELNVS(ph)FINEK ddPTM_HeLa_A485_30min_R1 2 ELNVSFINEK 10 0 P49585;C9JEJ2;C9J050;Q9Y5K3-2;Q9Y5K3-4;Q9Y5K3-3;Q9Y5K3 P49585 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B 1 0 ELNVS(1)FINEK;ELNVS(1)FINEK ; 145.49 5.31E-06 51522000 224595 196671 157803 279989 335210 202885 344280 348530 207460 332110 TRUE FALSE FALSE 274555.3829 219669.9626 216180.8964 295284.0901 301835.3154 213507.7449 270721.7655 263052.471 249095.3191 249321.089 1.101212031 0.88107253 0.867078261 1.18435264 1.210628899 0.856356539 1.085835805 1.055075092 0.999094461 1 17.92764539 -5.244834905 24.97573602 1.057580285 0.94291611 0.16126007 0.110526222 1474.423374 2217761.252 0.030697222 0.052978589 5.69E-06 5.244834905 -0.114664176 ELNVS(ph)FINEK ddPTM_HeLa_A486_30min_R1 1 ELNVSFINEK 10 0 P49585;C9JEJ2;C9J050;Q9Y5K3-2;Q9Y5K3-4;Q9Y5K3-3;Q9Y5K3 P49585 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B 1 0 ELNVS(1)FINEK 133.48 5.96E-05 54101000 42088 50893 30793 22237 51616 58972 70025 66398 37546 57543 TRUE FALSE FALSE 39137.84854 46860.05333 42716.87427 51768.8598 45141.83998 51696.63422 52504.00435 51280.62486 40800.51751 43133.85826 0.907357935 1.086386779 0.990332792 1.200190799 1.046552333 1.198516347 1.217234128 1.188871734 0.94590466 1 15.39653315 -3.215365685 0.822009778 1.123447745 5.94E-11 0.256638852 0.095437964 14.72796299 2.099440642 0.033155107 22.45507572 0.000609024 3.215365685 -1.123447745 ELNYFAK ddPTM_HeLa_A485_30min_R1 2 ELNYFAK 7 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 126.67 0.0058835 37277000 129825 161863 147453 150931 195188 170321 207712 227868 133563 186102 FALSE FALSE TRUE 158704.1234 180791.4698 202002.0007 159175.9784 175754.3974 179238.7442 163332.6343 171983.0157 160367.869 139710.1964 1.135952332 1.294046351 1.445864411 1.139329716 1.25799263 1.282932448 1.169081703 1.230998311 1.14786088 1 17.09207779 -8.376146621 0.510476455 0.987895868 1.270623635 0.450208097 0.084824238 1.475407883 0.771723696 0.123007384 0.045015748 4.21E-09 8.376146621 0.282727767 ELNYFAK ddPTM_HeLa_A486_30min_R1 2 ELNYFAK 7 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 101.99 0.011134 0 224949 247250 226353 136179 488430 268230 270460 286280 216217 298230 FALSE FALSE TRUE 209181.2367 227657.0095 314002.9435 317031.5941 427166.555 235138.5098 202788.0474 221100.2934 234958.8636 223551.2668 0.935719308 1.018366001 1.404612678 1.418160579 1.910821446 1.051832598 0.907120994 0.989036191 1.051028996 1 17.7702462 -6.497291721 24.99093581 0.984967615 1.343341673 0.319626421 0.247753346 975.3331936 952613.1424 0.095789485 0.084146571 3.18E-07 6.497291721 0.358374058 ELPEQLQEHAIEDKETINNLDTSSS(ph)DFTILQEIEEPSLEPENEK ddPTM_HeLa_A486_30min_R1 1 ELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEK 44 1 Q15424;Q15424-4;Q15424-3 Q15424 SAFB Scaffold attachment factor B1 1 0 ELPEQLQEHAIEDKET(0.048)INNLDT(0.221)S(0.221)S(0.221)S(0.244)DFT(0.044)ILQEIEEPSLEPENEK 53.526 0.0067926 49796000 18868 16114 7123.8 14166 18115 26229 30660 31017 16177 35929 TRUE FALSE FALSE 17545.45063 14837.06795 9882.326142 32979.16391 15842.84778 22993.13266 22988.54371 23955.1062 17579.23539 26932.14454 0.651468754 0.550905552 0.366934246 1.224527956 0.588250511 0.853743103 0.853572714 0.889461519 0.652723193 1 14.71704149 -5.23318027 24.98438204 0.848827791 0.525883128 0.438375289 0.177121919 688.4512654 608671.1925 0.045654424 0.079055912 5.85E-06 5.23318027 -0.322944663 ELPESGIQLGT(ph)PR ddPTM_HeLa_A485_30min_R1 4 ELPESGIQLGTPR 13 0 A0A087WW69;F8W8L6;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 1 0 ELPESGIQLGT(1)PR;ELPESGIQLGT(1)PR;ELPESGIQLGT(1)PR;ELPESGIQLGT(1)PR ;;; 188.59 1.13E-16 1002550000 220569 280727 261493 187146 343482 279027 297072 341952 246934 272332 TRUE FALSE FALSE 269633.8131 313555.5806 358230.1423 197369.3121 309283.726 293636.4223 233600.1403 258087.7358 296491.3888 204444.6443 1.318859753 1.533694276 1.75221094 0.965392431 1.512799355 1.436263705 1.142608265 1.26238443 1.450228201 1 17.64135074 -13.19786388 0.101463927 5.51E-14 1.636284531 0.246595686 0.205405807 214.6113613 1.75323583 48.14986415 3.520896573 6.34E-14 13.19786388 1.636284531 ELPESGIQLGT(ph)PR ddPTM_HeLa_A486_30min_R1 5 ELPESGIQLGTPR 13 0 A0A087WW69;F8W8L6;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 1 0 ELPESGIQLGT(1)PR;ELPES(0.004)GIQLGT(0.996)PR;ELPESGIQLGT(1)PR;ELPESGIQLGT(1)PR;ELPESGIQLGT(1)PR ;;;; 271.46 9.31E-48 816737000 393870 444708 407341 149357 490733 362707 440734 447523 365004 418900 TRUE FALSE FALSE 366261.7469 409467.7185 565074.3442 347710.6441 429180.6912 317959.8981 330457.6916 345631.7823 396642.8406 314004.7134 1.166421176 1.304017746 1.799572809 1.107342117 1.366796971 1.01259594 1.052397233 1.100721637 1.263174799 1 18.26042669 -5.93724111 1.777929535 1.094680524 1.390426181 0.306347921 0.189115815 0.437123664 2.820850876 0.071000973 0.082068376 1.16E-06 5.93724111 0.295745658 ELPLTQPPSAHSSITSGSCPGT(ph)PEMR ddPTM_HeLa_A486_30min_R1 1 ELPLTQPPSAHSSITSGSCPGTPEMR 26 0 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4;J3KRP9 Q9HCD6 TANC2 Protein TANC2 1 0 ELPLTQPPSAHSS(0.001)IT(0.252)S(0.198)GS(0.031)CPGT(0.518)PEMR 88.744 4.87E-06 0 102530 131540 150800 11518 162390 62692 75840 111550 117940 44968 TRUE FALSE FALSE 95343.17647 121116.2913 209193.7986 26814.48609 142021.532 54957.69845 56864.02985 86152.50012 128163.1342 33707.72011 2.828526408 3.593132106 6.206109399 0.795499844 4.21332358 1.630418737 1.686973479 2.555868503 3.802189343 1 15.04079143 -5.27161175 24.99717703 2.339141949 4.147643676 0.32047678 1.307234409 859.3284984 2111677.935 0.360234711 0.541220438 5.35E-06 5.27161175 1.808501727 ELPPAAAIGATSLVAAPHS(ph)S(ph)SSSPSKDSSR ddPTM_HeLa_A485_30min_R1 2 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 ELPPAAAIGATS(0.001)LVAAPHS(0.309)S(0.342)S(0.358)S(0.357)S(0.339)PS(0.277)KDS(0.008)S(0.008)R;ELPPAAAIGATSLVAAPHS(0.305)S(0.339)S(0.356)S(0.355)S(0.337)PS(0.274)KDS(0.017)S(0.018)R ; 143.83 6.43E-09 344690000 166618 212001 154133 79267 187401 272396 187664 312430 207981 95318 TRUE FALSE FALSE 203681.5993 236792.6728 211153.2107 83597.1555 168742.6984 286658.2334 147568.0533 235806.0526 249720.879 71556.9768 2.846425442 3.309148645 2.950840298 1.168260025 2.358158575 4.006013756 2.062245499 3.295360749 3.489818745 1 16.12680482 ELPPAAAIGATSLVAAPHS(ph)S(ph)SSSPSKDSSR ddPTM_HeLa_A486_30min_R1 3 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 ELPPAAAIGAT(0.001)S(0.001)LVAAPHS(0.312)S(0.343)S(0.358)S(0.357)S(0.34)PS(0.28)KDS(0.004)S(0.004)R;ELPPAAAIGATS(0.001)LVAAPHS(0.353)S(0.381)S(0.391)S(0.385)S(0.361)PS(0.085)KDS(0.023)S(0.021)R;ELPPAAAIGATSLVAAPHS(0.776)S(0.428)S(0.382)S(0.218)S(0.191)PS(0.004)KDSSR ;; 172.74 3.64E-14 573140000 170091 182204 162761 19574.5 213581 133776 148573 155024 149992 77190 TRUE FALSE FALSE 158168.4993 167765.4915 225786.4181 45570.42524 186791.6794 117272.0773 111398.464 119728.4194 162993.4273 57861.12158 2.733588547 2.89945108 3.902212953 0.787582819 3.228276161 2.026785414 1.925273153 2.06923779 2.816976631 1 15.82030667 -7.165693248 0.099119085 1.02E-11 4.351261224 0.261753634 0.790940112 15.93028134 1.445602135 27.74884371 31.24905207 6.83E-08 7.165693248 4.351261224 ELPPAAAIGATSLVAAPHS(ph)SSSSPSKDSSR ddPTM_HeLa_A485_30min_R1 3 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.156)S(0.156)S(0.156)S(0.156)S(0.156)PS(0.156)KDS(0.033)S(0.033)R;ELPPAAAIGATSLVAAPHS(0.204)S(0.204)S(0.204)S(0.168)S(0.168)PS(0.038)KDS(0.006)S(0.006)R;ELPPAAAIGATSLVAAPHS(0.156)S(0.156)S(0.156)S(0.156)S(0.156)PS(0.156)KDS(0.031)S(0.031)R ;; 165 1.95E-14 3236220000 581260 1116190 953480 162866 1100810 1000440 813520 1118930 1063480 362624 TRUE FALSE FALSE 710559.2817 1246718.711 1306211.93 171762.9572 991209.4912 1052821.491 639704.8062 844510.6631 1276910.681 272228.5104 2.610157476 4.579677232 4.798218701 0.630951391 3.641093616 3.867418184 2.349881742 3.102212409 4.690583948 1 18.05445864 ELPPAAAIGATSLVAAPHS(ph)SSSSPSKDSSR ddPTM_HeLa_A486_30min_R1 5 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.166)S(0.166)S(0.166)S(0.166)S(0.166)PS(0.166)KDS(0.001)S(0.001)R;ELPPAAAIGATSLVAAPHS(0.279)S(0.196)S(0.165)S(0.165)S(0.165)PS(0.032)KDSSR;ELPPAAAIGATSLVAAPHS(0.164)S(0.164)S(0.164)S(0.164)S(0.164)PS(0.164)KDS(0.009)S(0.009)R;ELPPAAAIGATSLVAAPHS(0.272)S(0.173)S(0.173)S(0.173)S(0.173)PS(0.037)KDSSR;ELPPAAAIGATSLVAAPHS(0.424)S(0.158)S(0.158)S(0.158)S(0.097)PS(0.004)KDSSR ;;;; 250.59 3.02E-51 3243000000 1720440 2026680 2102390 114674.5 2670320 1210490 1208520 1379510 1815040 403211 TRUE FALSE FALSE 1599846.04 1866078.496 2916491.712 266968.0313 2335383.566 1061152.051 906135.5136 1065425.687 1972369.129 302244.3411 5.293220824 6.174072569 9.64945018 0.883285458 7.726806587 3.51090792 2.99802309 3.525047594 6.525743778 1 18.2053558 -5.256879012 24.99979713 3.969592879 6.952430088 0.306001904 2.257853877 517.737391 2838210.841 0.596930199 0.991081883 5.54E-06 5.256879012 2.982837209 ELPPAAAIGATSLVAAPHSS(ph)S(ph)SSPSKDSSR ddPTM_HeLa_A486_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 ELPPAAAIGATSLVAAPHS(0.238)S(0.326)S(0.346)S(0.349)S(0.335)PS(0.282)KDS(0.065)S(0.059)R 148.36 4.62E-09 151370000 39181 50312 43946 7079.3 65349 34811 31344 41562 36935 21119 TRUE FALSE FALSE 36434.61423 46325.09389 60963.06811 16480.96817 57152.31906 30516.37275 23501.39968 32099.23989 40136.55554 15830.66494 2.301521406 2.926288571 3.85094804 1.041078706 3.610228584 1.927674729 1.484549118 2.027662137 2.535367636 1 13.95043423 -8.300799413 0.136848807 8.41E-09 3.605769953 0.261302917 0.80229712 14.45254285 1.096144321 16.13430244 9.759530799 5.00E-09 8.300799413 3.605769945 ELPPAAAIGATSLVAAPHSS(ph)SSSPSKDSSR ddPTM_HeLa_A485_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.077)S(0.324)S(0.191)S(0.191)S(0.191)PS(0.027)KDSSR 233.08 4.48E-40 677840000 262530 670840 541130 111150 894660 449900 531990 635470 530070 248010 TRUE FALSE FALSE 320928.8928 749288.9025 741316.5053 117221.8431 805584.5091 473456.0683 418325.9905 479619.9861 636450.1869 186185.6713 1.723703498 4.024417654 3.981598048 0.629596479 4.326780377 2.542924303 2.246821614 2.576030598 3.418362877 1 17.50638252 -10.7621319 2.640093069 0.565930401 2.845261047 0.202065289 1.090600785 18669438.04 13296545.12 52458474.91 0.262133385 1.73E-11 10.7621319 2.279330645 ELPPAAAIGATSLVAAPHSS(ph)SSSPSKDSSR ddPTM_HeLa_A486_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.211)S(0.261)S(0.174)S(0.174)S(0.174)PS(0.007)KDSSR 177.1 1.93E-15 398560000 222570 239640 205510 3999.7 287790 139710 165890 184150 218760 61885 TRUE FALSE FALSE 206968.9924 220650.0536 285088.9757 9311.503734 251692.6947 122474.0007 124382.5674 142223.065 237722.2929 46388.5932 4.46163546 4.756558422 6.145669789 0.200728306 5.425745368 2.640174927 2.681317945 3.065905973 5.124585088 1 15.50148247 ELPPAAAIGATSLVAAPHSSS(ph)SSPSKDSSR ddPTM_HeLa_A485_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.016)S(0.089)S(0.285)S(0.285)S(0.285)PS(0.037)KDS(0.001)S(0.002)R 224.01 5.17E-39 733260000 244610 552360 519910 89368 710870 371820 436530 499980 398730 231790 TRUE FALSE FALSE 299022.6506 616953.6971 712246.3443 94249.94755 640093.2868 391287.9203 343261.7994 377359.1211 478751.4536 174009.0188 1.718431911 3.545527131 4.093157638 0.541638291 3.678506386 2.248664598 1.972666715 2.168618177 2.75130253 1 17.40880256 -10.00071881 0.220293528 9.46E-11 2.92129863 0.173864439 0.998413792 30.48834568 1.534102176 22.3598876 2.327965425 9.98E-11 10.00071881 2.92129863 ELPPAAAIGATSLVAAPHSSSSS(ph)PS(ph)KDSSR ddPTM_HeLa_A485_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 ELPPAAAIGATSLVAAPHS(0.3)S(0.327)S(0.342)S(0.343)S(0.331)PS(0.332)KDS(0.013)S(0.012)R 105.98 0.00045352 195870000 33477 60587 50524 27476 82165 51660 61962 68319 42195 47727 TRUE FALSE FALSE 40923.84316 67672.12261 69214.93008 28976.94431 73984.3641 54364.83772 48723.31252 51563.65813 50663.14946 35829.53725 1.142181739 1.888724438 1.931784092 0.808744587 2.064898678 1.517319002 1.35986441 1.439138267 1.41400513 1 15.12886179 -8.576030988 0.494546824 0.966298177 1.580061521 0.166114734 0.356579985 3.890694355 1.655125884 0.640836052 0.18729706 2.65E-09 8.576030988 0.613763344 ELPPAAAIGATSLVAAPHSSSSS(ph)PSKDSSR ddPTM_HeLa_A485_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.007)S(0.029)S(0.271)S(0.271)S(0.421)PSKDSSR 181.86 5.76E-21 219250000 31384 38381 44269 15691 67350 46162 61407 49826 45242 20889 TRUE FALSE FALSE 38365.26253 42869.32408 60645.94529 16548.1596 60644.39752 48578.97094 48286.8928 37606.09538 54321.65442 15681.75673 2.446490095 2.73370674 3.867292824 1.055249095 3.867194126 3.09780159 3.079176244 2.398079247 3.46400313 1 13.93679956 -9.534732796 7.277204146 1.000077706 2.886043504 0.343328495 0.784092904 0 0 0.71657807 0.17379571 2.92E-10 9.534732796 1.885965798 ELPPAAAIGATSLVAAPHSSSSS(ph)PSKDSSR ddPTM_HeLa_A486_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.085)S(0.085)S(0.047)S(0.305)S(0.416)PS(0.063)KDSSR 141.69 1.35E-09 180230000 61903 65588 64449 13650 100040 37680 55266 64783 62337 24612 TRUE FALSE FALSE 57563.91937 60390.56801 89405.3788 31777.88983 87492.05036 33031.4247 41437.86226 50033.3251 67740.42135 18448.995 3.120165589 3.273379824 4.846083962 1.722472678 4.742374875 1.790418649 2.246076941 2.711981064 3.671767559 1 14.17125461 -6.284654494 24.96227786 2.388674451 3.49752064 0.265111944 1.037749194 1220.918508 1312800.037 0.351017782 0.309750631 5.19E-07 6.284654494 1.108846189 ELPPAAAIGATSLVAAPHSSSSSPSKDS(ph)SR ddPTM_HeLa_A485_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.115)S(0.115)S(0.115)S(0.115)S(0.115)PS(0.115)KDS(0.155)S(0.155)R 136.01 8.18E-07 489560000 129620 210870 165910 41504 162420 214310 145780 221800 178980 55848 TRUE FALSE FALSE 158453.5218 235529.4122 227287.0131 43771.25843 146248.8945 225530.9402 114632.9121 167403.2022 214899.6443 41926.12141 3.779350832 5.617724804 5.421131397 1.044009247 3.488252421 5.379246461 2.734164484 3.992813945 5.125674331 1 15.35556175 ELPPLS(ph)PSLSR ddPTM_HeLa_A485_30min_R1 2 ELPPLSPSLSR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ELPPLS(0.76)PS(0.24)LSR;ELPPLS(0.99)PS(0.01)LSR ; 149.58 6.85E-07 1809950000 377790 523550 516530 396840 570910 499760 559440 598480 479440 583430 TRUE FALSE FALSE 461828.0821 584774.6182 707615.9416 418518.3643 514068.1958 525926.6608 439911.0738 451701.8416 575659.2103 437991.6382 1.054422144 1.335127357 1.615592353 0.955539622 1.173694087 1.200768725 1.004382357 1.031302432 1.314315526 1 18.7405438 -5.284209966 24.99092493 1.102089836 1.335055389 0.310285832 0.162424579 949.0869848 1041629.638 0.045854947 0.068064985 5.20E-06 5.284209966 0.232965553 ELPPLS(ph)PSLSR ddPTM_HeLa_A486_30min_R1 2 ELPPLSPSLSR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ELPPLS(0.967)PS(0.033)LSR;ELPPLS(0.602)PS(0.398)LSR ; 160.22 7.77E-08 2292600000 899370 1131140 1042540 362760 1265650 907230 1028440 932530 944620 1000810 TRUE FALSE FALSE 836328.8074 1041504.347 1446239.408 844523.6129 1106900.375 795305.1866 771113.4343 720213.276 1026500.422 750200.6618 1.114806811 1.388301024 1.927803429 1.125730296 1.475472406 1.06012328 1.027876238 0.960027513 1.368301142 1 19.51691701 -6.265523796 24.71090997 1.0773055 1.418787597 0.321626706 0.23423788 364.3741252 2204472.358 0.0815079 0.074491325 5.43E-07 6.265523796 0.341482097 ELPPLSPS(ph)LSR ddPTM_HeLa_A485_30min_R1 2 ELPPLSPSLSR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ELPPLS(0.232)PS(0.768)LSR;ELPPLS(0.341)PS(0.659)LSR ; 193.22 4.56E-11 1713300000 443560 565170 523140 381710 589810 568440 609710 636610 538890 609160 TRUE FALSE FALSE 542228.3917 631261.7152 716671.2557 402561.8508 531086.4455 598202.6394 479440.4776 480480.3993 647040.28 457307.6228 1.185697252 1.380387476 1.567153531 0.880286771 1.161333026 1.308096803 1.048398176 1.050672185 1.414890651 1 18.80280544 -5.252467482 24.98962614 1.131647206 1.378010206 0.326720172 0.167035372 801.3602094 2232041.954 0.0451953 0.076839363 5.59E-06 5.252467482 0.246362999 ELPPLSPS(ph)LSR ddPTM_HeLa_A486_30min_R1 1 ELPPLSPSLSR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ELPPLS(0.291)PS(0.709)LSR 154.36 4.06E-07 324950000 294590 328740 324470 143460 410100 286580 329160 313360 295580 324920 TRUE FALSE FALSE 273940.7623 302689.4451 450113.4736 333982.1301 358661.434 251224.6733 246800.6865 242014.7686 321201.1124 243557.9171 1.124745874 1.242782204 1.848075722 1.371263698 1.472591974 1.031478165 1.013314161 0.993664141 1.3187874 1 17.89390535 -6.262627083 24.94771822 1.067419359 1.424472231 0.428794743 0.196169311 104.9288003 2204012.442 0.069832501 0.065069926 5.46E-07 6.262627083 0.357052873 ELPPPSEEIKTGEDEDEEDNDALLKENES(ph)PDVR ddPTM_HeLa_A485_30min_R1 2 ELPPPSEEIKTGEDEDEEDNDALLKENESPDVR 33 2 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVR;ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVR ; 80.505 0.0002641 298240000 77553 32484 25612 204159 72044 52630 116190 90063 47009 234910 TRUE FALSE FALSE 94804.3973 36282.72123 35086.9446 215311.6892 64871.0464 55385.62542 91365.05731 67974.90804 56443.27511 176351.2602 0.537588431 0.205741208 0.198960555 1.220925152 0.367851334 0.314064245 0.51808565 0.385451785 0.320061649 1 17.42809236 -10.26701359 3.975961071 1.0006638 0.453449116 0.258357385 0.278490823 345738620.8 562277110.9 2731671.371 0.07076221 5.41E-11 10.26701359 -0.547214683 ELPPPSEEIKTGEDEDEEDNDALLKENES(ph)PDVR ddPTM_HeLa_A486_30min_R1 2 ELPPPSEEIKTGEDEDEEDNDALLKENESPDVR 33 2 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVR;ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVR ; 127.2 1.43E-06 241780000 71851 65619 28008.2 78227 57366 108798 160360 144612 66576 207813 TRUE FALSE FALSE 66814.61594 60419.11146 38853.72513 182116.4094 50170.62136 95375.60894 120236.2319 111687.0045 72346.86128 155775.2722 0.428916702 0.387860734 0.249421648 1.169097039 0.32207051 0.612264114 0.771856985 0.716975184 0.464430973 1 17.24910671 -9.310518305 0.080998743 1.643997853 1.47E-18 0.246431489 0.24835846 88.39866675 1.911834743 25.91973309 13.09157643 4.89E-10 9.310518305 -1.643997853 ELPPPSEEIKTGEDEDEEDNDALLKENES(ph)PDVRR ddPTM_HeLa_A485_30min_R1 2 ELPPPSEEIKTGEDEDEEDNDALLKENESPDVRR 34 3 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVRR;ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVRR ; 259.71 4.87E-64 546670000 101597.6 70655 49804 205061.3 143460 128680 280905.4 277271 91707 279257 TRUE FALSE FALSE 124197.6356 78917.48763 68228.57212 216263.2796 129176.6187 135417.4858 220887.6665 209269.8525 110111.7537 209643.3692 0.592423391 0.376436841 0.325450656 1.031577008 0.616173167 0.645942136 1.053635358 0.998218323 0.525233658 1 17.67757767 -5.252588256 24.99882416 0.830262833 0.425936933 0.490919157 0.18988399 562.5928437 1588965.726 0.052215995 0.088730516 5.59E-06 5.252588256 -0.4043259 ELPPPSEEIKTGEDEDEEDNDALLKENES(ph)PDVRR ddPTM_HeLa_A486_30min_R1 1 ELPPPSEEIKTGEDEDEEDNDALLKENESPDVRR 34 3 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ELPPPSEEIKTGEDEDEEDNDALLKENES(1)PDVRR 293.06 6.07E-93 410440000 86426 94183 31332 95354 101750 115390 222860 183710 56979 237100 TRUE FALSE FALSE 80367.9837 86719.59607 43464.5895 221988.9309 88987.56622 101154.355 167098.0708 141883.2434 61917.9856 177728.6167 0.452194954 0.487932656 0.244555943 1.249033133 0.500693517 0.569150635 0.940186639 0.798314002 0.348385008 1 17.43931647 -5.186433682 24.99999994 0.751089834 0.40419822 0.315751477 0.253113829 170.7391513 56907.6093 0.066995901 0.116040313 6.51E-06 5.186433682 -0.346891614 ELPPS(ph)PEKK ddPTM_HeLa_A485_30min_R1 11 ELPPSPEKK 9 1 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816-3;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK ;;;;;;;;;; 107.09 0.00063445 9502200000 10985650 6218005 3858532 21933630 8922260 7532130 13605460 9454010 6767660 27426980 TRUE FALSE FALSE 13429369.94 6945146.595 5285963.554 23131808.67 8033928.466 7926500.68 10698542.32 7135399.224 8125867.285 20589938.64 0.652229721 0.337307785 0.256725561 1.123452045 0.390187101 0.384969612 0.519600496 0.346547862 0.394652331 1 24.29543619 -10.51730001 3.025068744 1.017689066 0.487523765 0.296312006 0.235984214 117516973.9 134835935.5 17197513.97 0.060822938 3.04E-11 10.51730001 -0.530165301 ELPPS(ph)PEKK ddPTM_HeLa_A486_30min_R1 10 ELPPSPEKK 9 1 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816-3;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK ;;;;;;;;; 111.94 0.00049815 12436680000 14786970 13392360 4562120 10086070 9055470 17631670 22516330 18654490 10658710 28133270 TRUE FALSE FALSE 13750479.76 12331100.62 6328695.042 23480880.68 7919648.514 15456453.82 16882506.08 14407269.85 11582615.56 21088516.08 0.652036384 0.584730598 0.300101487 1.113443952 0.375543186 0.732932264 0.800554483 0.683180827 0.549238056 1 24.32995425 -14 0.199034179 2.555607094 0.59017054 0.196248566 0.214339221 231.8876031 2.29200346 143.9742833 0.505013575 1.00E-14 14 -1.965436554 ELPSAVS(ph)R ddPTM_HeLa_A485_30min_R1 2 ELPSAVSR 8 0 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 ELPSAVS(1)R;ELPSAVS(1)R ; 86.882 0.0044964 608860000 534430 832260 1031160 484000 888610 613560 732920 786570 694610 523610 TRUE FALSE FALSE 653312.1097 929585.5673 1412628.994 510439.6944 800136.8683 645685.0529 576325.6546 593662.4742 834011.8557 393083.6633 1.662017964 2.364854238 3.593710769 1.298552298 2.035538342 1.642614825 1.46616537 1.510270025 2.121715893 1 18.58447688 -5.302767327 24.99885882 1.619964891 2.522662441 0.401163007 0.534890353 500.7632636 302905.5873 0.149440156 0.221657877 4.98E-06 5.302767327 0.902697551 ELPSAVS(ph)R ddPTM_HeLa_A486_30min_R1 2 ELPSAVSR 8 0 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 ELPSAVS(1)R;ELPSAVS(1)R ; 81.335 0.0081541 542470000 561740 594740 501820 211790 687560 649230 670770 740690 551180 684670 TRUE FALSE FALSE 522364.9268 547610.6364 696138.1432 493057.8233 601319.8136 569134.6035 502936.2513 572051.0561 598956.7262 513224.1755 1.017810446 1.067000859 1.356401698 0.960706543 1.17165138 1.108939584 0.979954327 1.114622193 1.167046984 1 18.9692296 -6.545679294 24.97639581 1.070599051 1.119270682 0.042718406 0.110265448 922.7727986 1010824.477 0.041831847 0.032404532 2.85E-07 6.545679294 0.048671631 ELPSGK(ac)K ddPTM_HeLa_A485_30min_R1 2 ELPSGKK 7 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 1 ; ELPSGK(1)K;ELPSGK(1)K 119.17 0.015674 197356000 387320 416560 353310 394770 525730 547230 651800 741900 500160 749110 FALSE TRUE FALSE 473477.9978 465273.0684 484014.0715 416335.2855 473386.4753 575882.1166 512537.6053 559947.8617 600537.5243 562370.6633 0.84193225 0.827342354 0.860667355 0.740321842 0.841769506 1.024025886 0.911387522 0.995691807 1.067867802 1 19.10116181 -6.202278646 5.552076132 0.993962877 0.818614584 0.781097457 0.046951035 0.105039272 6.871242176 0.016052583 0.015931094 6.28E-07 6.202278646 -0.175348293 ELPSGK(ac)K ddPTM_HeLa_A486_30min_R1 2 ELPSGKK 7 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 1 ; ELPSGK(1)K;ELPSGK(1)K 107.9 0.032762 184025000 479670 534180 368910 212714 574090 587950 617190 652640 508930 719840 FALSE TRUE FALSE 446047.61 491849.6313 511761.8318 495208.942 502082.279 515414.7068 462762.534 504048.119 553044.4622 539587.3786 0.826645744 0.911529163 0.948431806 0.917754865 0.930493001 0.955201562 0.857622977 0.934136229 1.024939582 1 19.04149708 -1.000000001 0.085600293 1.060451917 0.558271538 0.435021587 0.042060746 194.730419 1.20864899 0.987290228 11.50940813 0.1 1.000000001 -0.502180379 ELPSHVQAMHK ddPTM_HeLa_A485_30min_R1 1 ELPSHVQAMHK 11 0 Q7Z333-3;Q7Z333;Q7Z333-4;X6RI79 Q7Z333-3 SETX Probable helicase senataxin 0 0 79.906 0.021608 19474000 34683 28763 53854 38081 96042 26037 44745 36307 46386 72684 FALSE FALSE TRUE 42398.1137 32126.58265 73776.83565 40161.2686 86479.72126 27400.25706 35184.86522 27402.65132 55695.24472 54565.21645 0.777017237 0.588774035 1.352085458 0.736023262 1.584887349 0.502156114 0.644822242 0.502199993 1.020709682 1 15.73569395 ELPSLSPAPDT(ph)GLSPSKR ddPTM_HeLa_A485_30min_R1 1 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.568)GLS(0.216)PS(0.216)KR 113.17 7.47E-05 552020000 237260 215360 176440 317000 300220 223290 344200 324150 216290 414330 TRUE FALSE FALSE 290037.6685 240544.4786 241712.4983 334316.9073 270329.0427 234981.1191 270658.8581 244651.7043 259697.4191 311045.1562 0.932461614 0.773342628 0.777097773 1.074817918 0.869099027 0.75545661 0.870159373 0.786547224 0.834918705 1 18.24676451 -6.012970737 24.97521923 0.834583774 0.885469805 0.023520432 0.099787184 2169.909052 4178174.724 0.032505768 0.034083364 9.71E-07 6.012970737 0.050886031 ELPSLSPAPDT(ph)GLSPSKR ddPTM_HeLa_A486_30min_R1 1 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.697)GLS(0.183)PS(0.12)KR 123.19 1.20E-05 459590000 243730 247360 155790 132860 262410 256940 297320 290230 211710 333230 TRUE FALSE FALSE 226645.7856 227758.2927 216116.0602 309304.7944 229496.0909 225241.3552 222927.3913 224150.9647 230061.1933 249787.039 0.907356068 0.911809891 0.865201257 1.238273994 0.91876701 0.901733557 0.89246981 0.897368276 0.921029346 1 17.93033909 -5.95610713 24.99937376 0.913783805 0.981373256 0.074623475 0.099078869 354.1772605 201721.7044 0.031748155 0.035999012 1.11E-06 5.95610713 0.067589451 ELPSLSPAPDTGLS(ph)PSKR ddPTM_HeLa_A485_30min_R1 2 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.007)GLS(0.867)PS(0.127)KR;ELPSLSPAPDT(0.008)GLS(0.838)PS(0.154)KR ; 193.71 1.21E-18 1209510000 1094810 958500 839760 1506180 1361380 1134450 1628870 1576010 1058530 2085880 TRUE FALSE FALSE 1338346.707 1070588.237 1150422.169 1588458.8 1225836.227 1193848.048 1280848.618 1189491.076 1270967.262 1565908.504 0.854677463 0.683685052 0.734667553 1.014400775 0.782827492 0.76239962 0.817958785 0.759617228 0.811648483 1 20.57856849 -8.057953051 20.81322782 1.000000001 0.799934594 0.333346297 0.083915526 3218.922862 1156042.874 0.082839835 0.021389153 8.75E-09 8.057953051 -0.200065407 ELPSLSPAPDTGLS(ph)PSKR ddPTM_HeLa_A486_30min_R1 3 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.012)GLS(0.569)PS(0.419)KR;ELPSLSPAPDT(0.274)GLS(0.682)PS(0.044)KR;ELPSLSPAPDT(0.114)GLS(0.774)PS(0.112)KR ;; 185.41 4.31E-18 2608590000 2250630 2389960 1364630 1067370 2231990 2578820 3082070 2825360 1917420 3288500 TRUE FALSE FALSE 2092872.459 2200570.866 1893051.282 2484891.302 1952033.002 2260671.408 2310903.487 2182087.205 2083623.509 2465038.195 0.849022325 0.892712685 0.767960223 1.008053874 0.791887527 0.917093866 0.937471675 0.885214359 0.845270273 1 21.23317857 -14 0.197606682 1.525770297 0.859585699 0.23506798 0.066176648 206.3849125 2.03695019 43.00966637 0.156704763 1.00E-14 14 -0.666184598 ELPSLSPAPDTGLSPS(ph)KR ddPTM_HeLa_A485_30min_R1 1 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.08)GLS(0.35)PS(0.57)KR 157.3 5.21E-09 779640000 464190 414340 383460 664570 621760 468230 709230 709370 442380 983640 TRUE FALSE FALSE 567447.4641 462793.4587 525317.8111 700873.7763 559855.3913 492745.7988 557697.2166 535395.8953 531161.6083 738436.6506 0.768444339 0.626720597 0.711391845 0.949131893 0.758163061 0.667282425 0.755240434 0.72503971 0.719305587 1 19.49411463 -10.60226006 2.720407954 1.021317374 0.742209694 0.480376243 0.080405434 19812416.46 18834032.16 3016440.987 0.021721998 2.50E-11 10.60226006 -0.27910768 ELPSQASGGLANPPPVNLEDS(ph)LDEDLIRNPASSVEAVSK ddPTM_HeLa_A485_30min_R1 1 ELPSQASGGLANPPPVNLEDSLDEDLIRNPASSVEAVSK 39 1 Q9NPG3;Q9NPG3-2;K7EJT1 Q9NPG3 UBN1 Ubinuclein-1 1 0 ELPSQASGGLANPPPVNLEDS(0.928)LDEDLIRNPAS(0.031)S(0.041)VEAVSK 142.56 4.99E-10 42893000 31545 35775 29817 31411 42516 37908 48912 59400 30493 52349 TRUE FALSE FALSE 38562.07642 39958.57505 40847.54909 33126.90339 38282.95776 39892.80426 38461.55163 44832.05686 36612.6654 39299.35771 0.981239355 1.016774252 1.039394826 0.842937527 0.974136983 1.015100668 0.978681431 1.14078345 0.931635211 1 15.26221811 -6.534810356 2.257502991 1.025372454 0.971358068 0.073087813 0.069472481 0.753348387 7.727778252 0.030403177 0.023364866 2.92E-07 6.534810356 -0.054014385 ELPTVTTNVQNS(ph)QDKSIEK ddPTM_HeLa_A486_30min_R1 1 ELPTVTTNVQNSQDKSIEK 19 1 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 ELPTVTTNVQNS(1)QDKSIEK 131.77 1.63E-06 291400000 134900 149850 63601 78401 124530 148620 183970 156780 101600 242020 TRUE FALSE FALSE 125444.2066 137975.3403 88229.01049 182521.4902 108910.2862 130284.7755 137938.7602 121084.6165 110406.7698 181416.6167 0.691470323 0.760544115 0.486333678 1.006090255 0.600332473 0.718152382 0.760342479 0.667439503 0.608581352 1 17.46894708 -10.12392108 4.667847298 1.000021948 0.702855723 0.327201819 0.129028002 3.05E-05 5.73E-06 0.11737024 0.02846415 7.52E-11 10.12392108 -0.297166226 ELQGDGPPS(ph)SPTNDPTVK ddPTM_HeLa_A485_30min_R1 1 ELQGDGPPSSPTNDPTVK 18 0 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.913)S(0.086)PTNDPTVK 209.25 1.45E-25 590740000 483040 429190 380980 621760 512460 475510 616040 533170 440660 829600 TRUE FALSE FALSE 590490.5815 479380.037 521920.3559 655725.1744 461437.683 500406.9683 484418.0214 402409.2215 529096.42 622795.9877 0.948128429 0.769722424 0.838027807 1.052873152 0.740913063 0.803484573 0.777811725 0.646133292 0.849550142 1 19.24840012 ELQGDGPPS(ph)SPTNDPTVKYETQPR ddPTM_HeLa_A485_30min_R1 1 ELQGDGPPSSPTNDPTVKYETQPR 24 1 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.497)S(0.497)PT(0.005)NDPTVKYETQPR 63.085 0.0085191 745470000 115840 204800 202500 157190 391700 313850 470220 703730 215460 313270 TRUE FALSE FALSE 141608.2084 228749.5785 277413.1767 165776.8917 352700.9727 330282.7007 369753.6557 531139.1141 258700.8457 235177.5543 0.602133179 0.972667562 1.179590363 0.704900993 1.499722087 1.404397208 1.572231911 2.258460063 1.100023539 1 17.84339085 -5.775570088 22.75602975 1.536980275 0.895009726 0.411000407 0.350564709 74.57492487 120094.1883 0.106969676 0.122052087 1.68E-06 5.775570088 -0.641970548 ELQGDGPPS(ph)SPTNDPTVKYETQPR ddPTM_HeLa_A486_30min_R1 2 ELQGDGPPSSPTNDPTVKYETQPR 24 1 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.515)S(0.411)PT(0.073)NDPTVKYETQPR;ELQGDGPPS(0.571)S(0.416)PT(0.013)NDPTVKYETQPR ; 117.73 5.63E-05 699210000 428130 387770 354880 254990 798070 466610 694520 792940 331040 580780 TRUE FALSE FALSE 398120.2979 357041.693 492299.04 593629.6065 697968.6189 409044.4023 520743.7501 612404.8718 359734.8137 435348.9078 0.914485579 0.820127687 1.130814919 1.363572059 1.603239623 0.939578336 1.196152651 1.406698997 0.826313808 1 18.73181258 -4.864724077 4.629641009 1.216614459 0.86863638 0.242659746 0.221243474 0.259000947 9.320768477 0.05839939 0.13032159 1.37E-05 4.864724077 -0.347978078 ELQGDGPPSS(ph)PTNDPTVK ddPTM_HeLa_A485_30min_R1 3 ELQGDGPPSSPTNDPTVK 18 0 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.018)S(0.949)PT(0.032)NDPTVK;ELQGDGPPS(0.117)S(0.875)PT(0.008)NDPTVK;ELQGDGPPS(0.153)S(0.845)PT(0.002)NDPTVK ;; 245.95 1.37E-45 1157900000 1260400 1190650 1003420 1650040 1391040 1278150 1623180 1404350 1205740 2214660 TRUE FALSE FALSE 1540771.632 1329886.16 1374626.814 1740177.507 1252543.173 1345071.958 1276374.333 1059930.961 1447720.958 1662586.02 0.926731979 0.799890138 0.826800417 1.046669157 0.753370447 0.809023979 0.767704238 0.637519471 0.870764545 1 20.66499755 ELQGDGPPSS(ph)PTNDPTVK ddPTM_HeLa_A486_30min_R1 4 ELQGDGPPSSPTNDPTVK 18 0 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.042)S(0.958)PTNDPTVK;ELQGDGPPS(0.026)S(0.973)PT(0.001)NDPTVK;ELQGDGPPS(0.009)S(0.99)PT(0.001)NDPTVK;ELQGDGPPS(0.178)S(0.738)PT(0.084)NDPTVK ;;; 225.69 1.36E-34 1580770000 1962050 2051720 1198020 758340 1785180 2095590 2420020 2217980 1776880 2550770 TRUE FALSE FALSE 1824520.427 1889134.235 1661925.428 1765453.844 1561266.078 1837057.412 1814505.4 1712994.372 1930901.389 1912040.589 0.954226828 0.988019943 0.869189408 0.92333492 0.816544422 0.96078369 0.948988954 0.89589854 1.009864226 1 20.86668172 -7.769032634 24.998712 1.004932179 0.919260714 0.343755064 0.047145737 219.2910522 721925.6197 0.043443716 0.012094494 1.70E-08 7.769032634 -0.085671465 ELQQAELPNRS(ph)PGFGIK ddPTM_HeLa_A486_30min_R1 1 ELQQAELPNRSPGFGIK 17 1 F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 F8VU11 PRPF40B Pre-mRNA-processing factor 40 homolog B 1 0 ELQQAELPNRS(1)PGFGIK 77.045 0.0023758 144100000 84103 76498 54046 57622 67415 96965 96180 96960 83871 142960 TRUE FALSE FALSE 78207.81401 70436.01988 74974.0586 134146.9281 58959.18208 85002.44417 72114.74671 74884.32462 91141.00581 107161.8855 0.729809985 0.65728612 0.699633627 1.251815675 0.550187987 0.793215272 0.672951455 0.698796258 0.850498341 1 16.70943234 -8.039716194 5.38905961 0.999938313 0.759972054 0.152685454 0.17705454 0.438719703 44.91263364 0.170092148 0.044244719 9.13E-09 8.039716194 -0.239966259 ELRAPS(ph)PPVEHPR ddPTM_HeLa_A485_30min_R1 1 ELRAPSPPVEHPR 13 1 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 ELRAPS(1)PPVEHPR 145.43 5.44E-08 268220000 25397 59156 47297 22064 66073 57181 61927 93758 37985 30303 TRUE FALSE FALSE 31046.47503 66073.77961 64794.12849 23269.30045 59494.54012 60174.90874 48695.79055 70763.70349 45608.24108 22749.01979 1.364739023 2.904467104 2.848216279 1.022870465 2.615257303 2.645164904 2.140566539 3.110626487 2.004844231 1 14.47351676 ELRAPS(ph)PPVEHPR ddPTM_HeLa_A486_30min_R1 1 ELRAPSPPVEHPR 13 1 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 ELRAPS(1)PPVEHPR 121.27 4.28E-05 152450000 26911 21660 27545 9287.5 41885 20858 29413 34356 20138 28773 TRUE FALSE FALSE 25024.67787 19943.58272 38211.16168 21621.76936 36631.39274 18284.75203 22053.5563 26533.88879 21883.57805 21568.05352 1.160265939 0.924681622 1.771655548 1.002490528 1.698409766 0.847770153 1.022510273 1.230240307 1.014629254 1 14.39660836 -6.300204062 24.99233688 1.037387582 1.298408185 0.226111152 0.265625816 932.2940328 601065.2733 0.090897568 0.080165549 5.01E-07 6.300204062 0.261020603 ELREDS(ph)IR ddPTM_HeLa_A485_30min_R1 1 ELREDSIR 8 1 C9JK69;P17342-3;P17342-2;P17342 C9JK69 NPR3 Atrial natriuretic peptide receptor 3 1 0 ELREDS(1)IR 74.611 0.0064461 501030000 272910 273810 254250 306080 279310 319570 382470 419960 397180 682810 TRUE FALSE FALSE 333617.888 305829.6977 348307.6552 322800.3754 251500.9157 336302.1911 300752.16 316964.1515 476890.3828 512598.0332 0.650837238 0.596626748 0.679494716 0.629733933 0.490639642 0.656073901 0.586721252 0.618348357 0.930339861 1 18.96746842 -7.804218875 4.080583969 0.993567113 0.610685168 0.891006546 0.049430862 0.061153691 2.013069599 0.046053667 0.012647974 1.57E-08 7.804218875 -0.382881945 ELREDS(ph)IR ddPTM_HeLa_A486_30min_R1 2 ELREDSIR 8 1 C9JK69;P17342-3;P17342-2;P17342 C9JK69 NPR3 Atrial natriuretic peptide receptor 3 1 0 ELREDS(1)IR;ELREDS(1)IR ; 88.338 0.0020599 1094760000 650050 622150 605680 190462 844870 769680 678070 732510 802320 810040 TRUE FALSE FALSE 604484.8519 572848.5682 840215.5167 443405.1614 738898.5265 674724.7071 508409.7141 565733.4636 871865.7436 607200.7115 0.995527246 0.94342539 1.383752523 0.730244799 1.216893381 1.111205396 0.83730092 0.931707511 1.435877342 1 19.21181396 -7.734437132 24.9753915 1.217939656 1.022433133 0.134983791 0.201516001 368.4517693 340796.332 0.13015343 0.04916472 1.84E-08 7.734437132 -0.195506523 ELS(ph)APAR ddPTM_HeLa_A485_30min_R1 1 ELSAPAR 7 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 0 ELS(1)APAR 103.19 0.0038286 783010000 599310 729320 692820 697640 884030 698310 901610 990790 704180 894090 TRUE FALSE FALSE 732624.4419 814607.6298 949122.9486 735750.3067 796012.8692 734872.4318 708973.658 747797.199 845502.4669 671209.8175 1.0914984 1.213640815 1.414048072 1.096155461 1.185937465 1.094847561 1.056262348 1.114103488 1.259669398 1 19.35640429 ELS(ph)APAR ddPTM_HeLa_A486_30min_R1 4 ELSAPAR 7 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 0 ELS(1)APAR;ELS(1)APAR;ELS(1)APAR;ELS(1)APAR ;;; 100.98 0.0043296 2505540000 3421980 3868670 2848070 1471710 4280290 3763520 4131650 4089240 3096350 4040130 TRUE FALSE FALSE 3182116.873 3562102.5 3950918.978 3426215.256 3743416.116 3299215.167 3097867.47 3158209.319 3364744.111 3028455.151 1.050739309 1.176211079 1.304598807 1.131340926 1.236081081 1.089405325 1.022920042 1.042845002 1.111043071 1 21.53015062 -6.447271556 4.99777211 1.048483319 1.18330739 0.480157974 0.066983001 0.198141005 8.988325856 0.024529134 0.021192853 3.57E-07 6.447271556 0.134824071 ELS(ph)DLEEENR ddPTM_HeLa_A486_30min_R1 1 ELSDLEEENR 10 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 ELS(1)DLEEENR 122.33 0.00015835 94472000 218260 164640 117720 92310 166910 167190 247350 233070 130640 316940 TRUE FALSE FALSE 202961.1011 151593.3268 163304.3367 214902.3451 145974.5914 146563.7977 185460.4138 180005.0489 141963.9804 237576.1611 0.854299102 0.638083072 0.68737678 0.904561906 0.614432823 0.616912897 0.78063562 0.757673026 0.597551454 1 17.85803055 -10.16312989 4.651306375 1.000036334 0.716301652 0.415175229 0.100820363 3.73E-05 6.70E-06 0.095760136 0.023222274 6.87E-11 10.16312989 -0.283734682 ELS(ph)GTIK ddPTM_HeLa_A485_30min_R1 1 ELSGTIK 7 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 1 0 ELS(0.932)GT(0.068)IK 111.06 0.0029204 102720000 167960 165060 114420 254820 179190 191210 271470 261480 150530 331390 TRUE FALSE FALSE 205322.1225 184362.3312 156748.7194 268740.1714 161349.2144 201221.4599 213468.2168 197351.62 180739.9903 248780.5718 0.825314136 0.741064022 0.630068169 1.080229736 0.648560349 0.808831086 0.858058229 0.793275852 0.726503637 1 17.9245143 -10.05406629 3.879968663 1.000043564 0.791053032 0.217486379 0.119370642 64695119.42 133686427 38776.48607 0.028537769 8.83E-11 10.05406629 -0.208990532 ELS(ph)GTIK ddPTM_HeLa_A486_30min_R1 2 ELSGTIK 7 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 1 0 ELS(0.95)GT(0.05)IK;ELS(0.981)GT(0.019)IK ; 108.81 0.0031346 312619000 648820 574990 299690 262180 518010 691030 813660 803840 492810 980590 TRUE FALSE FALSE 603341.0685 529425.6983 415737.994 610368.2898 453036.3555 605777.7445 610073.662 620823.1797 535527.1676 735043.8814 0.820823197 0.720264071 0.565596156 0.830383471 0.616339197 0.824138204 0.829982641 0.844606962 0.728564894 1 19.48747085 -6.400664134 8.09042845 0.836280342 0.709951246 0.3219425 0.097485328 0.376661881 23.30532587 0.033019704 0.029068763 3.97E-07 6.400664134 -0.126329096 ELS(ph)NS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 ELSNSPLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(1)NS(1)PLR 92.792 0.0072459 891600000 1954400 2082700 1270700 522510 1324500 1693900 1515900 1444000 1560000 1964000 TRUE FALSE FALSE 1817406.653 1917659.267 1762749.071 1216429.686 1158368.86 1484923.84 1136605.786 1115232.722 1695222.056 1472201.617 1.234482174 1.302579243 1.19735575 0.826265691 0.786827597 1.008641631 0.772044925 0.757527169 1.151487702 1 20.48954383 -5.177848238 4.666101705 0.884922194 1.262330052 0.631458413 0.120616258 0.132243288 5.112755228 0.032535613 0.057887889 6.64E-06 5.177848238 0.377407858 ELS(ph)NS(ph)PLRENSFGSPLEFR ddPTM_HeLa_A486_30min_R1 1 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(1)NS(0.999)PLRENS(0.001)FGSPLEFR 74.876 0.0045436 196250000 102920 116810 84067 38522 105800 102840 113870 118190 86085 113640 TRUE FALSE FALSE 95705.83948 107553.5502 116619.9938 89681.16279 92529.57745 90152.6464 85378.52161 91280.71707 93546.91711 85183.80433 1.123521545 1.262605621 1.369039511 1.052795933 1.086234387 1.058330831 1.002285849 1.071573614 1.098177263 1 16.37829154 -5.284597673 24.6126631 1.055275741 1.252810558 0.679051465 0.062661141 357.0027002 379421.9901 0.017858449 0.026508061 5.19E-06 5.284597673 0.197534817 ELS(ph)NSPLRENS(ph)FGS(ph)PLEFR ddPTM_HeLa_A486_30min_R1 2 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 ELS(0.8)NS(0.201)PLRENS(1)FGS(1)PLEFR;ELS(0.907)NS(0.093)PLRENS(0.999)FGS(1)PLEFR ; 99.34 0.0005152 102573000 114479 139961 110659 62242 161562 132418 144367 150824 122098 141957 TRUE FALSE FALSE 106454.6133 128869.9806 153509.1284 144902.5215 141297.3875 116081.6135 108244.8496 116484.6677 132681.5529 106410.0432 1.000418852 1.211069714 1.442618795 1.361737268 1.327857627 1.090889638 1.017242794 1.094677383 1.246889381 1 16.6992748 -6.27093237 23.26947283 1.091313576 1.280362919 0.336252686 0.125065869 325.2523087 797262.9921 0.046709389 0.041805254 5.36E-07 6.27093237 0.189049343 ELS(ph)PAALEK ddPTM_HeLa_A485_30min_R1 2 ELSPAALEK 9 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 ELS(1)PAALEK;ELS(1)PAALEK ; 169.65 6.75E-06 4652000000 3999070 3573740 2722880 5175600 4978700 4065830 5905200 6124300 3487500 6519000 TRUE FALSE FALSE 4888649.325 3991657.806 3730186.62 5458329.923 4483003.147 4278710.572 4643505.779 4622305.822 4187409.261 4893933.273 0.998920306 0.815633884 0.762206269 1.115325775 0.916032748 0.874288703 0.948828993 0.944497108 0.855632684 1 22.222563 ELS(ph)PAALEK ddPTM_HeLa_A486_30min_R1 5 ELSPAALEK 9 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK ;;;; 160.67 1.36E-05 6662100000 4499920 4701090 2495060 2120362 4685880 5056420 5960440 5449310 3894580 6094040 TRUE FALSE FALSE 4184498.846 4328558.507 3461214.052 4936309.893 4098133.236 4432610.31 4469074.869 4208621.071 4232165.33 4568052.718 0.916035585 0.947571925 0.757700111 1.080615789 0.897129146 0.970350078 0.978332595 0.921316222 0.926470335 1 22.12314787 -5.263548841 24.99982203 0.962073767 0.881149486 0.292879887 0.066210862 268.6642288 3184030.949 0.017844627 0.02799816 5.45E-06 5.263548841 -0.080924281 ELS(ph)PAALEKR ddPTM_HeLa_A485_30min_R1 5 ELSPAALEKR 10 1 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 ELS(1)PAALEKR;ELS(1)PAALEKR;ELS(1)PAALEKR;ELS(1)PAALEKR;ELS(1)PAALEKR ;;;; 145.81 3.05E-06 1567350000 661304 932090 790387 750040 1345655 1166476 1524877 2041215 842685 1082474 TRUE FALSE FALSE 808408.7933 1041089.817 1082784.042 791012.786 1211676.863 1227550.88 1199074.572 1540603.821 1011804.15 812633.1533 0.99480164 1.281131361 1.332438921 0.973394677 1.491050246 1.510584296 1.475542275 1.895817091 1.245093368 1 19.6322447 -5.785970951 24.5185658 1.486810451 1.168490751 0.24534058 0.238999057 227.423246 227301.3129 0.071160997 0.080728811 1.64E-06 5.785970951 -0.318319699 ELS(ph)PAALEKR ddPTM_HeLa_A486_30min_R1 5 ELSPAALEKR 10 1 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 ELS(1)PAALEKR;ELS(1)PAALEKR;ELS(1)PAALEKR;ELS(1)PAALEKR;ELS(1)PAALEKR ;;;; 138.31 1.61E-05 1649628000 1690228 1531818 1150117 777247 2089090 1503980 2041649 2268303 1091555 2022655 TRUE FALSE FALSE 1571751.746 1410431.163 1595473.104 1809470.296 1827056.852 1318434.239 1530806.826 1751859.924 1186171.866 1516169.023 1.036659978 0.930259847 1.052305567 1.193448929 1.205048266 0.869582625 1.009654467 1.1554516 0.782348042 1 20.53199916 -6.267979225 24.97860317 0.976013526 1.079399005 0.205211724 0.116763542 1079.556838 4123303.955 0.042612066 0.03848574 5.40E-07 6.267979225 0.10338548 ELS(ph)PAGSISK ddPTM_HeLa_A485_30min_R1 6 ELSPAGSISK 10 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK ;;;;; 178.65 1.77E-09 13215470000 17265800 18734000 14340800 22492400 24554500 20817100 27431100 30029000 18013800 29133700 TRUE FALSE FALSE 21106517.64 20924778.34 19646058.69 23721102.86 22109767.76 21907051.17 21570221.39 22664340.67 21629004.43 21871204.76 0.965036809 0.956727285 0.898261386 1.084581445 1.01090763 1.001638977 0.986238373 1.036263933 0.988926064 1 24.38252936 -5.248493574 24.99993623 1.015029926 0.941680375 0.547676963 0.031429314 605.1731097 1168661.657 0.008494486 0.014591366 5.64E-06 5.248493574 -0.073349551 ELS(ph)PAGSISK ddPTM_HeLa_A486_30min_R1 6 ELSPAGSISK 10 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK;ELS(1)PAGSISK ;;;;; 168.58 3.33E-07 15569500000 28748600 29544800 17055200 9799910 29006000 28741000 33805700 33788500 23309000 33266300 TRUE FALSE FALSE 26733471.6 27203562.45 23659430.19 22814685.74 25367797.01 25195227.64 25347156.3 26095596.15 25329442.89 24936201.95 1.072074715 1.090926457 0.948798467 0.91492224 1.017307971 1.010387536 1.01648023 1.046494418 1.015769881 1 24.57173841 -6.773016464 2.793421168 1.024348986 1.005653489 0.006969397 0.049463893 1.499075149 23.94584521 0.025373798 0.017050822 1.69E-07 6.773016464 -0.018695497 ELS(ph)PEAR ddPTM_HeLa_A486_30min_R1 1 ELSPEAR 7 0 Q9P0B6 Q9P0B6 CCDC167 Coiled-coil domain-containing protein 167 1 0 ELS(1)PEAR 80.438 0.0099093 0 662330 657360 546000 167830 766340 620370 603700 588770 589820 647440 TRUE FALSE FALSE 615904.0873 605268.3995 757425.8224 390716.7217 670218.4914 543835.0569 452647.8747 454719.9238 640946.0725 485316.8099 1.269076353 1.247161415 1.560683263 0.8050756 1.38099171 1.120577416 0.932685342 0.936954819 1.320675607 1 18.88856731 -5.25364509 24.99997597 1.077587113 1.34779243 0.340704616 0.183220138 729.7587072 2340676.154 0.049311685 0.083451492 5.58E-06 5.25364509 0.270205317 ELS(ph)PEGPGK ddPTM_HeLa_A486_30min_R1 1 ELSPEGPGK 9 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 ELS(1)PEGPGK 121.36 0.00039734 188130000 458160 497110 213770 129220 357550 538320 437010 392450 430590 773100 TRUE FALSE FALSE 426045.3499 457717.1932 296547.469 300830.6904 312702.745 471907.5516 327665.4758 303097.7021 467913.8879 579510.728 0.735181127 0.789833857 0.511720413 0.519111512 0.539597854 0.814320648 0.565417446 0.523023453 0.807429208 1 19.14447584 -8.002904946 4.905377883 0.999580763 0.6253915 0.541557397 0.109903081 0.120028307 9.888706885 0.111883679 0.02918293 9.93E-09 8.002904946 -0.374189263 ELS(ph)PQHK ddPTM_HeLa_A485_30min_R1 5 ELSPQHK 7 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 ELS(1)PQHK;ELS(1)PQHK;ELS(1)PQHK;ELS(1)PQHK;ELS(1)PQHK ;;;; 82.287 0.0078882 3019520000 3397520 2038575 1342111 6260480 1810429 2402484 2751190 2580678 3047890 7618620 TRUE FALSE FALSE 4153286.603 2276968.613 1838613.709 6602474.17 1630176.332 2528274.347 2163375.781 1947762.674 3659573.566 5719438.244 0.726170373 0.398110534 0.321467534 1.154392073 0.285023854 0.442049418 0.378249697 0.340551395 0.639848427 1 22.44744202 -8.020574667 20.43241121 1.000000027 0.503054163 0.267062483 0.247234885 177.9821337 176753.6719 0.236985604 0.061189417 9.54E-09 8.020574667 -0.496945864 ELS(ph)PQHK ddPTM_HeLa_A486_30min_R1 4 ELSPQHK 7 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 ELS(1)PQHK;ELS(1)PQHK;ELS(1)PQHK;ELS(1)PQHK ;;; 83.998 0.0058832 1265690000 2365460 1417810 1702440 1304220 1165230 5114310 2497590 2000880 3464490 3320830 TRUE FALSE FALSE 2199653.469 1305457.572 2361670.361 3036290.072 1019075.988 4483358.431 1872666.565 1545323.303 3764794.783 2489272.553 0.883653125 0.524433361 0.948739164 1.21974995 0.409387066 1.801071733 0.752294707 0.620793131 1.512407622 1 21.24729277 -4.930048106 7.388981247 1.02678555 0.707542007 0.102878329 0.394883916 0.527630856 46.85713039 0.099554854 0.209100732 1.17E-05 4.930048106 -0.319243543 ELS(ph)PQHKR ddPTM_HeLa_A485_30min_R1 7 ELSPQHKR 8 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR ;;;;;; 86.313 0.0026962 29580790000 9234440 9684730 4772960 9729510 6329190 9957080 11440590 16655400 8175490 12341640 TRUE FALSE FALSE 11288609.32 10817274.93 6538676.523 10261008.49 5699033.62 10478417.31 8996214.485 12570637.04 9816235.853 9265096.279 1.218401728 1.167529684 0.705732172 1.107490757 0.615107868 1.130956117 0.970979061 1.356773492 1.059485574 1 23.14337454 -7.134110893 19.39398962 1.157764157 0.97979271 0.100345034 0.203391116 6.29993857 939.1780202 0.094437342 0.054523393 7.34E-08 7.134110893 -0.177971447 ELS(ph)PQHKR ddPTM_HeLa_A486_30min_R1 6 ELSPQHKR 8 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR;ELS(1)PQHKR ;;;;; 68.355 0.010599 15318770000 7368790 3864190 4761740 3389630 3939990 9119200 6697220 5444540 6425600 8273210 TRUE FALSE FALSE 6852275.873 3557977.511 6605613.252 7891229.942 3445799.715 7994165.821 5021504.72 4204937.095 6982576.182 6201544.366 1.104930557 0.573724431 1.065156171 1.272462064 0.555635744 1.28906049 0.809718422 0.678046765 1.125941502 1 22.5641961 -9.395039212 14.88930371 0.999996048 0.931406839 0.003124211 0.260426174 0 0 0.23992954 0.058191461 4.03E-10 9.395039212 -0.068589208 ELS(ph)VEEQIKR ddPTM_HeLa_A485_30min_R1 2 ELSVEEQIKR 10 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ELS(1)VEEQIKR;ELS(1)VEEQIKR ; 136.24 2.42E-05 349970000 501720 423260 315100 566260 580760 470960 649750 635850 410930 777390 TRUE FALSE FALSE 613325.8831 472756.5751 431668.6024 597193.35 522937.4952 495618.7374 510925.6045 479906.7905 493399.8817 583600.9798 1.050933608 0.810068166 0.739663944 1.02329052 0.896053148 0.84924247 0.875470779 0.822320056 0.845440462 1 19.15462278 -6.229149781 19.7193196 0.867200793 0.896280692 0.007409508 0.09618981 295.3621299 180373.7164 0.0319304 0.031919051 5.90E-07 6.229149781 0.029079899 ELS(ph)VEEQIKR ddPTM_HeLa_A486_30min_R1 2 ELSVEEQIKR 10 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ELS(1)VEEQIKR;ELS(1)VEEQIKR ; 123.64 7.35E-05 332760000 588870 591110 341650 323570 591520 718720 880780 823040 463620 841690 TRUE FALSE FALSE 547593.2539 544268.2908 473946.0297 753287.3123 517326.0459 630051.6338 660399.5281 635651.7588 503806.9549 630925.3455 0.867920837 0.862650858 0.751191933 1.193940484 0.819948112 0.99861519 1.0467158 1.00749124 0.79852071 1 19.26710978 -5.204367405 24.99989161 0.977854086 0.830794199 0.29316 0.109114521 365.9019345 160279.3226 0.028494323 0.049353596 6.25E-06 5.204367405 -0.147059887 ELSDFISYLQR ddPTM_HeLa_A485_30min_R1 3 ELSDFISYLQR 11 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ;; ;; 247.75 4.25E-28 73295000 61337 80067 76224 64954 90327 81127 94165 105459 63334 88032 FALSE FALSE TRUE 74981.20404 89430.13916 104422.4295 68502.27255 81333.72672 85374.68427 74045.87849 79595.0149 76044.55287 66087.24251 1.134579099 1.353213355 1.580069399 1.03654306 1.230702381 1.291848185 1.120426208 1.20439304 1.150669176 1 16.01208418 -7.732349923 0.282721598 0.966570989 1.340538338 0.271711503 0.13655417 2.525508682 0.732461034 0.358523182 0.268223165 1.85E-08 7.732349923 0.373967349 ELSDFISYLQR ddPTM_HeLa_A486_30min_R1 3 ELSDFISYLQR 11 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ;; ;; 167.67 2.01E-06 97835000 95767.1 115707.9 97447.5 52369.5 144940 106290.4 115208.8 112358.9 94115.1 119468.7 FALSE FALSE TRUE 89054.32083 106538.7846 135181.7817 121918.8426 126760.2737 93177.37113 86382.33969 86777.23125 102273.0726 89552.95991 0.994431908 1.189673515 1.509517741 1.361416113 1.415478325 1.040472266 0.964595026 0.969004613 1.142040115 1 16.4504535 -6.328348704 7.283619529 1.016108588 1.303716718 0.492712544 0.1372146 0.251036253 23.99396342 0.052135573 0.045977622 4.70E-07 6.328348704 0.28760813 ELSDIAHR ddPTM_HeLa_A485_30min_R1 9 ELSDIAHR 8 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;;;;;;; ;;;;;;;; 185.55 2.15E-05 3374344000 3081381 4810125 4771624 3004087 5176587 4492193 4949901 5593245 4264951 4244878 FALSE FALSE TRUE 3766823.573 5372627.276 6536846.281 3168192.666 4661187.822 4727397.279 3892314.214 4221492.894 5120887.545 3186708.036 1.182042261 1.685949016 2.051284965 0.994189813 1.462696855 1.483473612 1.221421659 1.324719066 1.606952218 1 21.60363542 -12.69372694 0.154547195 1.76E-13 1.592079337 0.173715965 0.28301875 149.543977 1.964879785 49.5459709 1.43633475 2.02E-13 12.69372694 1.592079337 ELSDIAHR ddPTM_HeLa_A486_30min_R1 7 ELSDIAHR 8 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;;;;; ;;;;;; 160.26 6.25E-05 2136501000 3079617 3435136 2990044 628893.8 4235867 2851786 3229286 3201543 2894111 2999672 FALSE FALSE TRUE 2863751.751 3162923.313 4147869.113 1464096.549 3704565.063 2499961.638 2421284.487 2472621.548 3144974.872 2248534.607 1.273608039 1.406659832 1.84469881 0.651133652 1.647546385 1.111818173 1.076827761 1.099659103 1.398677549 1 21.10055366 -5.242826808 24.99880772 1.162201583 1.498155908 0.266346881 0.277777694 1202.699614 1615360.752 0.072340215 0.125018329 5.72E-06 5.242826808 0.335954326 ELSDQATAS(ph)PIVAR ddPTM_HeLa_A485_30min_R1 3 ELSDQATASPIVAR 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 ELSDQAT(0.002)AS(0.998)PIVAR;ELSDQATAS(1)PIVAR;ELSDQAT(0.001)AS(0.999)PIVAR ;; 230.45 2.75E-28 1871600000 787655 1013866 1120520 975140 1284240 946252 1114720 1025390 979581 1237490 TRUE FALSE FALSE 962866.1374 1132428.809 1535046.977 1028409.429 1156376.556 995796.2915 876550.9656 773911.4948 1176173.921 929006.5173 1.036447129 1.218967562 1.652353292 1.106999154 1.244745365 1.071893763 0.943535862 0.833052815 1.266055619 1 19.82532919 -6.262202442 2.028263864 0.996125586 1.276733202 0.282371881 0.182556174 0.416636289 3.367347602 0.07464672 0.068516387 5.47E-07 6.262202442 0.280607616 ELSDQATAS(ph)PIVAR ddPTM_HeLa_A486_30min_R1 7 ELSDQATASPIVAR 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 ELSDQATAS(1)PIVAR;ELSDQAT(0.003)AS(0.997)PIVAR;ELSDQAT(0.001)AS(0.999)PIVAR;ELSDQATAS(1)PIVAR;ELSDQAT(0.007)AS(0.993)PIVAR;ELSDQAT(0.001)AS(0.999)PIVAR;ELSDQATAS(1)PIVAR ;;;;;; 292.2 7.22E-58 3255530000 1953300 2527640 2107860 778404 2767010 2340320 2416870 2499610 2121390 2299840 TRUE FALSE FALSE 1816383.757 2327340.601 2924079.842 1812163.85 2419945.804 2051595.113 1812143.563 1930503.369 2305273.793 1723945.095 1.053620421 1.35000854 1.696156015 1.051172602 1.403725566 1.190058268 1.051160834 1.1198172 1.33720836 1 20.7172824 -6.454060883 5.950082716 1.134635072 1.319151477 0.17445559 0.189472863 0.412864426 27.29710354 0.06807097 0.059231139 3.52E-07 6.454060883 0.184516405 ELSESVQQQSTPVPLIS(ph)PKR ddPTM_HeLa_A485_30min_R1 1 ELSESVQQQSTPVPLISPKR 20 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 ELSESVQQQSTPVPLIS(1)PKR 121.62 2.05E-06 59004000 29151 40219 36442 42397 79570 57386 95488 106980 39169 63297 TRUE FALSE FALSE 35635.53938 44922.26219 49923.41228 44713.04076 71647.73141 60390.64222 75086.20873 80742.98726 47029.85902 47518.22279 0.749934179 0.945369156 1.05061615 0.940966184 1.507794846 1.270894378 1.580156082 1.699200486 0.9897226 1 15.53619326 -5.75097421 24.85447807 1.384677801 0.932617157 0.442853201 0.227318407 169.2054462 401855.9373 0.065813682 0.084023453 1.77E-06 5.75097421 -0.452060644 ELSKEDLSPAFDHS(ph)PNK ddPTM_HeLa_A485_30min_R1 3 ELSKEDLSPAFDHSPNK 17 1 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 ELSKEDLSPAFDHS(1)PNK;ELSKEDLSPAFDHS(1)PNK;ELSKEDLSPAFDHS(1)PNK ;; 228.57 9.41E-35 1098300000 1469390 844400 679300 2711250 1662510 1166480 1924060 1184980 1199740 3833320 TRUE FALSE FALSE 1796250.736 943145.2347 930601.338 2859358.722 1496984.667 1227555.089 1512968.863 894361.797 1440516.813 2877743.871 0.624187147 0.327737727 0.323378792 0.993611263 0.520193851 0.42656857 0.52574827 0.310785753 0.500571586 1 21.45650676 -11.15251728 2.122299644 2.048231105 0.502540364 0.377636596 0.190262735 7383352.892 1657033.147 37211511.04 0.049898519 7.04E-12 11.15251728 -1.545690741 ELSKEDLSPAFDHS(ph)PNK ddPTM_HeLa_A486_30min_R1 1 ELSKEDLSPAFDHSPNK 17 1 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 ELSKEDLSPAFDHS(1)PNK 177.87 1.61E-13 711550000 795510 938970 364850 438350 749250 1111300 1338700 1188200 664570 1246900 TRUE FALSE FALSE 739748.857 864562.5975 506129.691 1020500.953 655272.0785 974199.1049 1003743.101 917672.7982 722175.4627 934668.124 0.791456174 0.924994204 0.541507384 1.091832413 0.701074597 1.042294136 1.073903212 0.981816727 0.772654426 1 19.83409467 -5.863016445 1.349389625 0.968429212 0.795108942 0.167777375 0.158029421 0.760368114 2.895332361 0.062388716 0.079748933 1.37E-06 5.863016445 -0.173320269 ELSLKAS(ph)PLR ddPTM_HeLa_A485_30min_R1 5 ELSLKASPLR 10 1 Q86W50 Q86W50 METTL16 Methyltransferase-like protein 16 1 0 ELS(0.001)LKAS(0.999)PLR;ELS(0.001)LKAS(0.999)PLR;ELS(0.002)LKAS(0.998)PLR;ELSLKAS(1)PLR;ELSLKAS(1)PLR ;;;; 119.17 0.00015024 2766020000 3253190 3595900 3004150 4184830 4209880 3561550 4470280 4230630 3589810 5724740 TRUE FALSE FALSE 3976850.892 4016409.225 4115510.098 4413436.666 3790729.565 3748027.251 3515168.159 3193061.359 4310251.939 4297667.674 0.925350956 0.934555561 0.957614783 1.026937632 0.882043437 0.872107277 0.817924611 0.7429754 1.002928162 1 22.0351225 -5.917648152 8.948272774 0.867928704 0.958851848 0.161271993 0.077557935 0.429056373 42.26094183 0.023693941 0.026889537 1.21E-06 5.917648152 0.090923145 ELSLKAS(ph)PLR ddPTM_HeLa_A486_30min_R1 4 ELSLKASPLR 10 1 Q86W50 Q86W50 METTL16 Methyltransferase-like protein 16 1 0 ELSLKAS(1)PLR;ELSLKAS(1)PLR;ELSLKAS(1)PLR;ELSLKAS(1)PLR ;;; 134.13 2.68E-05 3587050000 5628600 5640800 3303250 2087240 4875900 5350500 6194000 5957000 4413500 6922100 TRUE FALSE FALSE 5234064.206 5193802.465 4582356.864 4859200.203 4264319.156 4690409.71 4644195.687 4600721.14 4796065.734 5188761.105 1.008731005 1.000971592 0.883131208 0.936485628 0.821837635 0.90395561 0.895049048 0.886670449 0.924318086 1 22.30695868 -4.754390625 24.62382344 0.899940761 1.004851379 0.449469028 0.043093557 103.5728897 361806.1616 0.010334125 0.02610783 1.76E-05 4.754390625 0.104910618 ELSNS(ph)PLR ddPTM_HeLa_A485_30min_R1 6 ELSNSPLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELS(0.002)NS(0.998)PLR;ELS(0.055)NS(0.945)PLR;ELS(0.001)NS(0.999)PLR;ELSNS(1)PLR;ELS(0.019)NS(0.981)PLR;ELS(0.172)NS(0.828)PLR ;;;;; 179.95 8.08E-06 27927300000 8436530 9147670 9474980 8907530 8985710 6961020 8163220 5903870 8442530 10791690 TRUE FALSE FALSE 10313206.99 10217410.43 12980169.39 9394125.809 8091061.162 7325488.243 6419081.36 4455936.626 10136868.33 8101520.289 1.272996502 1.261171986 1.602189333 1.159550982 0.998708992 0.904211553 0.792330468 0.550012401 1.251230383 1 22.94976123 -5.716023384 2.296797084 0.871537008 1.368391809 0.543553249 0.189404927 0.213766635 2.310355783 0.061805446 0.081406387 1.92E-06 5.716023384 0.496854801 ELSNS(ph)PLR ddPTM_HeLa_A486_30min_R1 6 ELSNSPLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELS(0.001)NS(0.999)PLR;ELS(0.066)NS(0.934)PLR;ELS(0.004)NS(0.996)PLR;ELS(0.005)NS(0.995)PLR;ELS(0.106)NS(0.894)PLR;ELS(0.042)NS(0.958)PLR ;;;;; 154.05 0.00015959 31687500000 11753710 14101200 10042440 3113010 10871940 11426920 11216060 10570090 11477560 11879220 TRUE FALSE FALSE 10929835.63 12983769.56 13931141.71 7247244.603 9508279.908 10017182.79 8409683.157 8163511.25 12472444.14 8904585.991 1.227438944 1.458099183 1.564490671 0.813877772 1.067795843 1.124946494 0.944421578 0.916776059 1.400676478 1 23.08611711 -5.254276763 24.99752931 1.035809276 1.420818563 0.522508678 0.165704693 437.01658 1525183.98 0.044521094 0.075133798 5.57E-06 5.254276763 0.385009287 ELSNS(ph)PLRENS(ph)FGS(ph)PLEFR ddPTM_HeLa_A486_30min_R1 1 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 ELS(0.154)NS(0.846)PLRENS(1)FGS(1)PLEFR 98.967 0.00054203 157340000 64536 72153 60596 30399 83796 73266 70328 75897 61468 70962 TRUE FALSE FALSE 60012.35966 66435.3335 84060.39402 70770.40828 73285.52431 64227.18583 52731.19055 58616.90992 66796.09573 53192.65331 1.128207674 1.24895694 1.580300827 1.330454562 1.377737709 1.207444672 0.99132469 1.101973793 1.255739121 1 15.69893938 -6.487323021 4.438904082 1.094953267 1.340072338 0.457143367 0.125939236 0.204469507 9.271009027 0.049367706 0.041271316 3.26E-07 6.487323021 0.245119071 ELSNS(ph)PLRENS(ph)FGSPLEFR ddPTM_HeLa_A485_30min_R1 3 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(0.003)NS(0.997)PLRENS(1)FGSPLEFR;ELS(0.016)NS(0.984)PLRENS(1)FGSPLEFR;ELS(0.008)NS(0.992)PLRENS(0.997)FGS(0.002)PLEFR ;; 217.5 1.49E-34 1092037000 563115 778310 785240 701450 905480 728320 892270 891080 760700 899880 TRUE FALSE FALSE 688377.989 869326.5841 1075732.953 739768.4373 815327.2319 766453.709 701629.2253 672541.2328 913365.5124 675556.4771 1.018979186 1.286830359 1.592365685 1.095050469 1.206897217 1.13455164 1.038594476 0.995536651 1.352019474 1 19.36571686 ELSNS(ph)PLRENS(ph)FGSPLEFR ddPTM_HeLa_A486_30min_R1 3 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(0.016)NS(0.984)PLRENS(1)FGSPLEFR;ELS(0.013)NS(0.987)PLRENS(0.999)FGS(0.001)PLEFR;ELS(0.108)NS(0.893)PLRENS(1)FGSPLEFR ;; 206 1.18E-25 1517730000 863120 1094630 938090 403590 1253530 1048430 1147340 1244040 1009330 1159590 TRUE FALSE FALSE 802619.7452 1007887.532 1301343.571 939577.9163 1096300.579 919085.3663 860263.3967 960799.2492 1096819.537 869221.1163 0.923378103 1.159529507 1.497137548 1.08094235 1.261244761 1.057366588 0.989694544 1.105356544 1.261841799 1 19.7293637 -6.27498805 24.37858104 1.083614339 1.19468368 0.098084284 0.152455676 1396.766459 2513242.324 0.054993574 0.048786498 5.31E-07 6.27498805 0.111069341 ELSNS(ph)PLRENSFGS(ph)PLEFR ddPTM_HeLa_A485_30min_R1 8 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(0.027)NS(0.973)PLRENS(0.082)FGS(0.918)PLEFR;ELS(0.019)NS(0.981)PLRENS(0.003)FGS(0.997)PLEFR;ELS(0.003)NS(0.997)PLRENSFGS(1)PLEFR;ELS(0.001)NS(0.999)PLRENSFGS(1)PLEFR;ELS(0.008)NS(0.992)PLRENS(0.076)FGS(0.924)PLEFR;ELS(0.021)NS(0.979)PLRENSFGS(1)PLEFR;ELS(0.138)NS(0.862)PLRENS(0.361)FGS(0.639)PLEFR;ELS(0.008)NS(0.992)PLRENS(0.008)FGS(0.992)PLEFR ;;;;;;; 270.2 3.04E-59 9236589000 3798785 5398180 5740370 3983915 6712610 5124176 5849840 6225200 5101670 5393440 TRUE FALSE FALSE 4643811.618 6029450.193 7863971.74 4201546.189 6044278.979 5392469.932 4599973.895 4698459.939 6125528.374 4048954.667 1.14691618 1.489137491 1.942222718 1.037686646 1.492799865 1.331817809 1.136089256 1.160413076 1.512866623 1 21.94911806 -6.103401344 1.115104376 1.219213414 1.470103734 0.127283757 0.256531814 1.038755043 2.716807711 0.127533477 0.133721194 7.88E-07 6.103401344 0.25089032 ELSNS(ph)PLRENSFGS(ph)PLEFR ddPTM_HeLa_A486_30min_R1 7 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(0.007)NS(0.993)PLRENS(0.021)FGS(0.979)PLEFR;ELS(0.038)NS(0.962)PLRENS(0.008)FGS(0.992)PLEFR;ELS(0.015)NS(0.985)PLRENSFGS(1)PLEFR;ELS(0.011)NS(0.989)PLRENSFGS(1)PLEFR;ELS(0.002)NS(0.998)PLRENS(0.001)FGS(0.999)PLEFR;ELS(0.034)NS(0.966)PLRENS(0.006)FGS(0.994)PLEFR;ELS(0.018)NS(0.982)PLRENS(0.048)FGS(0.952)PLEFR ;;;;;; 247.58 5.86E-46 9817064000 2417212 2823252 2521530 1002409 3362059 2513047 2898059 3067840 2246532 2554898 TRUE FALSE FALSE 2247777.921 2599527.229 3497933.945 2333658.811 2940358.21 2203012.812 2172933.986 2369359.802 2441263.203 1915134.911 1.173691685 1.357359847 1.826468686 1.218534944 1.535326933 1.150317296 1.134611443 1.237176446 1.274721268 1 20.8690146 -6.273200038 24.7834881 1.172641686 1.429806098 0.341961664 0.181738612 826.031832 1740709.344 0.063861025 0.056783874 5.33E-07 6.273200038 0.257164412 ELSNS(ph)PLRENSFGSPLEFR ddPTM_HeLa_A485_30min_R1 6 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELSNS(1)PLRENSFGSPLEFR;ELS(0.001)NS(0.999)PLRENSFGSPLEFR;ELS(0.017)NS(0.982)PLRENS(0.001)FGSPLEFR;ELS(0.003)NS(0.997)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELS(0.02)NS(0.976)PLRENS(0.004)FGSPLEFR ;;;;; 276.19 9.14E-70 46885120000 3689040 4833480 5238140 3980620 6239310 4786880 5994530 6166970 4590340 5511900 TRUE FALSE FALSE 4509654.221 5398713.44 7175945.963 4198071.191 5618102.389 5037513.635 4713749.695 4654510.938 5511579.133 4137884.769 1.089845289 1.304703669 1.734206331 1.014545215 1.357723258 1.21741274 1.139168913 1.12485272 1.33197985 1 21.98046204 -6.183800913 1.118646019 1.15687719 1.330461952 0.111554759 0.194299571 1.133483693 2.963195499 0.099851276 0.09690095 6.55E-07 6.183800913 0.173584761 ELSNS(ph)PLRENSFGSPLEFR ddPTM_HeLa_A486_30min_R1 7 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELS(0.001)NS(0.999)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELSNS(1)PLRENSFGSPLEFR;ELS(0.016)NS(0.983)PLRENSFGSPLEFR ;;;;;; 311.58 8.03E-90 56422070000 7189920 7503800 6904230 2663038 9325230 7054370 8470530 8987480 6560560 8234330 TRUE FALSE FALSE 6685943.737 6909171.56 9577732.758 6199687.046 8155572.699 6184073.553 6351113.802 6941226.999 7129234.623 6172400.172 1.083199979 1.11936546 1.551703145 1.004420788 1.321296817 1.001891222 1.028953669 1.124558811 1.155018214 1 22.55740017 -6.270459223 24.89042564 1.067798641 1.217524888 0.214049046 0.147246017 1064.266729 2936855.692 0.05102338 0.045660179 5.36E-07 6.270459223 0.149726247 ELSNSVSTYRPFGLGSES(ph)PYK ddPTM_HeLa_A486_30min_R1 1 ELSNSVSTYRPFGLGSESPYK 21 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ELSNSVSTYRPFGLGS(0.033)ES(0.967)PYK 103.16 0.0001026 103170000 90084 91954 44826 41304 83791 102360 105710 94652 79340 124380 TRUE FALSE FALSE 83769.57679 84667.23015 62183.82768 96157.79939 73281.15146 89731.86392 79260.23991 73101.80584 86217.25508 93234.43842 0.898483202 0.908111118 0.666962002 1.031354948 0.785988018 0.96243261 0.850117631 0.784064419 0.924736144 1 16.50857533 -8.003183591 24.30318819 1.000000011 0.86175964 0.172916825 0.096049069 116.1715615 886853.6375 0.087028023 0.022470539 9.93E-09 8.003183591 -0.138240371 ELSNSVSTYRPFGLGSES(ph)PYKQPSDGMERPSSLMDSSQEK ddPTM_HeLa_A485_30min_R1 1 ELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEK 40 3 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ELSNSVSTYRPFGLGS(0.023)ES(0.977)PYKQPSDGMERPSSLMDSSQEK 234.17 9.59E-52 1356800000 606870 376920 248970 1012600 484320 540310 806310 632080 395320 1239100 TRUE FALSE FALSE 741866.1378 420997.5152 341074.3635 1067915.774 436099.4002 568599.7961 634035.2816 477061.3889 474657.0979 930215.1739 0.797521002 0.452580787 0.366661793 1.148030911 0.468815616 0.611256204 0.681600665 0.512850577 0.510265916 1 19.82720495 -9.906291963 3.988043188 1.000016264 0.614427853 0.226060866 0.212774679 82701869.37 170862266.6 19941.7228 0.0536287 1.24E-10 9.906291963 -0.385588411 ELSNSVSTYRPFGLGSES(ph)PYKQPSDGMERPSSLMDSSQEK ddPTM_HeLa_A486_30min_R1 2 ELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEK 40 3 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ELSNSVS(0.006)T(0.006)YRPFGLGS(0.133)ES(0.854)PYKQPSDGMERPSSLMDSSQEK;ELS(0.01)NS(0.01)VS(0.01)T(0.01)YRPFGLGS(0.202)ES(0.758)PYKQPSDGMERPSSLMDSSQEK ; 188.18 6.75E-22 1971910000 785840 630476 274189 420779 567973 1034803 1075800 1002247 604733 1465528 TRUE FALSE FALSE 730756.6741 580514.7856 380362.3238 979594.777 496732.5302 907139.527 806623.4613 774057.237 657151.7433 1098550.25 0.665200954 0.52843717 0.34624026 0.891715948 0.452170968 0.825760612 0.73426178 0.704617051 0.598199075 1 20.06716943 -13.99999996 0.110142926 2.144963677 0.434398979 0.351962411 0.153779325 184.0320386 1.344920398 47.65258878 1.887243765 1.00E-14 13.99999996 -1.710564698 ELSPLISLPS(ph)PVPPLS(ph)PIHSNQQTLPR ddPTM_HeLa_A485_30min_R1 3 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 2 0 ELSPLIS(0.104)LPS(0.895)PVPPLS(0.999)PIHS(0.001)NQQTLPR;ELSPLIS(0.027)LPS(0.973)PVPPLS(0.995)PIHS(0.004)NQQT(0.001)LPR;ELSPLIS(0.036)LPS(0.963)PVPPLS(0.989)PIHS(0.008)NQQT(0.002)LPR ;; 94.75 0.0024519 503290000 107444 158247 142258 107584 169432 133251 161805 195871 136133 148783 TRUE FALSE FALSE 131344.5471 176752.6101 194885.154 113461.0415 152562.7552 140227.8163 127234.0399 147833.3301 163453.6444 111694.1362 1.17593055 1.582469913 1.744810969 1.015819141 1.365897623 1.25546265 1.139129091 1.323554979 1.463403988 1 16.76919392 -5.262842469 24.99996475 1.240576954 1.509210412 0.305495033 0.190551626 159.1723848 2836117.326 0.052379312 0.082700754 5.46E-06 5.262842469 0.268633458 ELSPLISLPS(ph)PVPPLS(ph)PIHSNQQTLPR ddPTM_HeLa_A486_30min_R1 3 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 2 0 ELSPLIS(0.023)LPS(0.977)PVPPLS(0.963)PIHS(0.035)NQQT(0.002)LPR;ELSPLIS(0.101)LPS(0.899)PVPPLS(0.998)PIHS(0.001)NQQT(0.001)LPR;ELSPLIS(0.019)LPS(0.981)PVPPLS(1)PIHSNQQTLPR ;; 143.61 6.13E-09 500320000 140952 146284 133607 55214 183888 135688 145108 149327 121747 128795 TRUE FALSE FALSE 131071.9927 134691.9231 185343.2085 128540.9824 160823.0524 118948.1941 108800.4436 115328.5019 132300.128 96543.89369 1.357641459 1.395136636 1.919781785 1.331425297 1.665802426 1.232063361 1.126953134 1.194570651 1.370362463 1 16.55889739 -6.353344744 6.039103237 1.1891124 1.535752206 0.480140239 0.181929226 0.217078039 11.66192101 0.063819097 0.056134283 4.43E-07 6.353344744 0.346639806 ELSPLISLPSPVPPLS(ph)PIHSNQQTLPR ddPTM_HeLa_A485_30min_R1 1 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 ELSPLISLPS(0.003)PVPPLS(0.985)PIHS(0.009)NQQT(0.003)LPR 67.283 0.0082608 108410000 18032 32786 27068 20350 28704 27818 29035 34017 28819 27570 TRUE FALSE FALSE 22043.15619 36620.0375 37081.57959 21461.66897 25846.12897 29274.50747 22831.43506 25674.27741 34602.70896 20697.30639 1.06502536 1.769314171 1.791613793 1.036930534 1.248767762 1.414411466 1.103111421 1.240464674 1.671846003 1 14.3371554 -5.26227761 24.99942007 1.256389625 1.564717406 0.212172119 0.260444383 113.6839422 3390554.465 0.071361208 0.113154984 5.47E-06 5.26227761 0.308327781 ELSPLISLPSPVPPLS(ph)PIHSNQQTLPR ddPTM_HeLa_A486_30min_R1 1 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 ELSPLISLPSPVPPLS(0.894)PIHS(0.044)NQQT(0.062)LPR 72.707 0.0067199 75125000 30913 30604 25695 19289 37095 35538 46170 37601 29671 40437 TRUE FALSE FALSE 28746.15833 28178.82758 35644.79214 44905.76681 32442.1992 31153.68288 34617.77766 29040.07312 32242.90617 30311.312 0.948364041 0.929647241 1.175956756 1.481485421 1.070300065 1.027790644 1.142074539 0.958060579 1.063725192 1 14.88756868 -7.015995856 1.466458327 1.009434285 1.123003578 0.073678234 0.14864847 1.284750708 5.300075888 0.115616588 0.054320295 9.64E-08 7.015995856 0.113569293 ELSQCNCIDLSKS(ph)PDPDKSTGTDCR ddPTM_HeLa_A486_30min_R1 1 ELSQCNCIDLSKSPDPDKSTGTDCR 25 2 E9PKY2;A0A0C4DFM7;Q5TAX3;E9PKX1 E9PKY2 ZCCHC11 Terminal uridylyltransferase 4 1 0 ELS(0.105)QCNCIDLS(0.205)KS(0.69)PDPDKSTGTDCR 43.622 0.02789 348070000 52134 55904 26559 41625 47864 69939 83257 90900 34746 102200 TRUE FALSE FALSE 48479.67582 51473.96344 36843.35607 96905.10361 41860.45081 61310.63727 62425.218 70204.05433 37757.81126 76608.45479 0.632824092 0.671909694 0.480930678 1.264940063 0.546420769 0.800311629 0.814860686 0.916400866 0.492867417 1 16.225216 ELSSPIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ELSSPISPK 9 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELSS(0.012)PIS(0.987)PK;ELSSPIS(1)PK ; 98.156 0.0022326 727060000 1248600 1263500 911900 2056180 1553330 1353020 2070200 1841990 1168530 2577700 TRUE FALSE FALSE 1526346.762 1411255.334 1249249.757 2168503.907 1398675.011 1423862.035 1627884.858 1390239.064 1403043.253 1935126.829 0.788757997 0.729283121 0.645564796 1.120600404 0.722782089 0.735797785 0.841229026 0.718422712 0.72503943 1 20.88399669 -11.23101536 2.250459356 1.721041389 0.782238588 0.220765754 0.123503498 18168941.26 3484431.318 66552261.56 0.032049524 5.87E-12 11.23101536 -0.938802801 ELSSPIS(ph)PK ddPTM_HeLa_A486_30min_R1 4 ELSSPISPK 9 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELS(0.002)S(0.012)PIS(0.986)PK;ELSS(0.005)PIS(0.995)PK;ELSSPIS(1)PK;ELSSPIS(1)PK ;;; 121.96 0.0003684 1902560000 3770110 3401400 1680910 1973520 2840980 3710150 4753240 4228690 2736570 6561500 TRUE FALSE FALSE 3505844.758 3131860.676 2331803.368 4594454.296 2484637.797 3252429.415 3563929.077 3265909.599 2973778.091 4918457.692 0.712793517 0.636756657 0.474092391 0.934125001 0.50516604 0.661270182 0.724602975 0.664010916 0.604615975 1 22.22977456 -10.75175531 2.607722514 1.077150514 0.657421326 0.422676645 0.120087144 22749394.79 17028498.91 11290601.62 0.028930038 1.77E-11 10.75175531 -0.419729188 ELST(ph)PDKVLIPER ddPTM_HeLa_A485_30min_R1 1 ELSTPDKVLIPER 13 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 ELS(0.205)T(0.795)PDKVLIPER 92.38 0.0016944 41772000 75146 71913 58939 98012 86172 65314 83102 81495 61017 121310 TRUE FALSE FALSE 91861.96845 80322.59979 80742.98876 103366.1474 77592.41311 68733.74005 65346.57882 61508.22347 73262.55222 91069.64955 1.008700142 0.881990874 0.886607 1.135023006 0.852011768 0.754738163 0.717545078 0.675397608 0.804467269 1 16.47468271 -5.993978304 24.98883816 0.769785374 0.968287257 0.409963942 0.104699029 144.6738193 600361.3958 0.031936797 0.036115833 1.01E-06 5.993978304 0.198501883 ELSVQDQPSLS(ph)PTSLQNSSSHTTTAK ddPTM_HeLa_A485_30min_R1 1 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 0 ELSVQDQPSLS(0.982)PT(0.017)S(0.001)LQNSSSHTTTAK 246.36 7.17E-50 402460000 207640 377530 355290 99233 442590 297340 381350 372190 323110 271640 TRUE FALSE FALSE 253828.8017 421678.8494 486726.5559 104653.8475 398524.1856 312908.2626 299871.4572 280909.8189 387955.2133 203925.1472 1.24471555 2.067811917 2.386790264 0.513197362 1.954267 1.534427053 1.470497687 1.377514362 1.902439295 1 17.63768017 -11.85322807 0.241937452 9.03E-18 1.681558711 0.108457086 0.496295643 124.9954757 3.149448313 67.12010051 0.807568009 1.40E-12 11.85322807 1.681558711 ELSVQDQPSLS(ph)PTSLQNSSSHTTTAK ddPTM_HeLa_A486_30min_R1 1 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 0 ELSVQDQPS(0.001)LS(0.966)PT(0.029)S(0.005)LQNSSSHTTTAK 213.08 3.52E-29 368790000 367760 413870 362950 8797.1 462300 283160 358500 318790 382590 103380 TRUE FALSE FALSE 341981.9231 381073.4339 503493.9601 20480.09338 404314.0232 248226.5982 268799.5082 246208.4761 415753.2092 77492.97511 4.413069993 4.917522309 6.497285198 0.264283225 5.217428066 3.203214199 3.468695166 3.177171554 5.365043846 1 16.24177791 -5.207412348 24.99999915 3.298068791 5.240114658 0.279990929 1.576788075 443.8263666 205371.4387 0.404608469 0.70080188 6.20E-06 5.207412348 1.942045866 ELSVQDQPSLSPT(ph)SLQNSSSHTTTAK ddPTM_HeLa_A485_30min_R1 1 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 0 ELSVQDQPSLS(0.101)PT(0.727)S(0.172)LQNSSSHTTTAK 226.4 2.94E-38 454500000 167430 309320 305030 80721 391050 244540 316600 338280 260760 232250 TRUE FALSE FALSE 204674.2259 345492.2833 417873.2904 85130.58383 352115.6889 257343.7363 248955.8236 255316.2996 313092.1402 174354.3492 1.173898023 1.981552423 2.3966898 0.488261889 2.019540611 1.475981169 1.427872747 1.464352915 1.795723144 1 17.41166283 -11.66782959 0.343029493 5.71E-24 1.612863516 0.103841354 0.498710548 158.3851399 5.768723296 118.5714562 0.3980947 2.15E-12 11.66782959 1.612863516 ELT(ph)DEEAER ddPTM_HeLa_A485_30min_R1 2 ELTDEEAER 9 0 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 ELT(1)DEEAER;ELT(1)DEEAER ; 185.99 6.45E-14 732000000 831720 755200 664610 1069570 955070 707080 1129390 901440 658850 1318670 TRUE FALSE FALSE 1016733.245 843514.0706 910476.8957 1127997.901 859979.8773 744101.6154 888086.6002 680360.4266 791075.1517 989949.8373 1.027055318 0.852077589 0.919720234 1.139449554 0.86871056 0.751655879 0.897102628 0.687267578 0.7991063 1 19.9169959 -5.989233276 24.98635573 0.811674085 0.974679148 0.33065031 0.104855126 241.2208321 559798.0003 0.031908901 0.0361484 1.03E-06 5.989233276 0.163005064 ELT(ph)DEEAER ddPTM_HeLa_A486_30min_R1 2 ELTDEEAER 9 0 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 ELT(1)DEEAER;ELT(1)DEEAER ; 215.79 3.15E-11 1533160000 1295100 1377000 940450 668400 1211570 1477130 1687260 1630210 1154450 1928350 TRUE FALSE FALSE 1204320.178 1267881.505 1304617.426 1556068.979 1059603.593 1294896.719 1265089.702 1259046.77 1254518.656 1445478.609 0.833163612 0.877136125 0.90255049 1.076507788 0.733046886 0.895825584 0.875204721 0.871024146 0.86789154 1 20.46311583 -10.06307497 4.36312101 1.00000871 0.883186718 0.166105824 0.079645593 52968560.98 3.202903337 5076.975177 0.01902318 8.65E-11 10.06307497 -0.116821992 ELT(ph)DEEAERLQLEIDQK ddPTM_HeLa_A486_30min_R1 2 ELTDEEAERLQLEIDQK 17 1 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 ELT(1)DEEAERLQLEIDQK;ELT(1)DEEAERLQLEIDQK ; 94.463 0.00083517 49363000 14728.4 16188.9 13508.3 23127 25929.8 24298.9 38324 36719 14230.6 34766.6 TRUE FALSE FALSE 13696.01522 14906.03261 18739.07552 53840.82477 22677.4427 21301.14877 28734.92985 28358.88527 15464.11987 26060.81707 0.525540515 0.571971039 0.719051727 2.065968409 0.870173895 0.817363044 1.102610474 1.088180973 0.593385842 1 14.6695947 -5.016087005 24.9737309 1.087553693 0.57294443 0.266453339 0.364951368 913.0223211 1417395.836 0.100221083 0.180253273 9.64E-06 5.016087005 -0.514609264 ELT(ph)PLQAMMLR ddPTM_HeLa_A485_30min_R1 1 ELTPLQAMMLR 11 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 ELT(1)PLQAMMLR 125.29 0.00029988 23250000 5241.9 4551 3073.2 5943.6 5785.1 2632 3401 3523.3 3225.3 8533.3 TRUE FALSE FALSE 6407.942571 5083.199862 4210.104567 6268.283818 5209.115131 2769.80745 2674.348566 2659.205151 3872.588126 6406.105354 1.000286792 0.793493017 0.657201893 0.978485909 0.813148527 0.43236995 0.417468714 0.415104811 0.60451521 1 12.64523181 -6.203810878 7.033985614 0.527843695 0.843522049 0.34134555 0.185348246 0.257906392 26.9809764 0.059213094 0.059035377 6.25E-07 6.203810878 0.315678354 ELT(ph)PLQAMMLR ddPTM_HeLa_A486_30min_R1 1 ELTPLQAMMLR 11 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 ELT(1)PLQAMMLR 119.17 0.0010348 32390000 64580 54841 36813 23320 60109 57908 65865 63008 45070 66128 TRUE FALSE FALSE 60053.27549 50495.19943 51067.97949 54290.13853 52569.56873 50763.89973 49384.88035 48662.45385 48976.70389 49569.11838 1.211505822 1.018682621 1.0302378 1.095241156 1.060530638 1.024103341 0.99628321 0.981709085 0.988048718 1 15.59715398 ELTHS(ph)RR ddPTM_HeLa_A485_30min_R1 1 ELTHSRR 7 1 E9PDV9;B3KU01;H0Y8V9;A0A0A0MQU6;Q9H2E6;Q9H2E6-2 E9PDV9 SEMA6A Semaphorin-6A 1 0 ELTHS(1)RR 59.205 0.022708 280500000 210470 281270 291320 221190 324380 279840 330110 368610 253450 296050 TRUE FALSE FALSE 257288.3254 314162.0798 399091.3908 233273.0496 292083.5882 294491.9897 259579.3017 278207.8195 304315.0902 222250.1834 1.157651802 1.413551498 1.795685316 1.049596657 1.314210786 1.325047229 1.167959899 1.251777683 1.36924562 1 17.76182508 -13.75843928 0.129866392 2.09E-09 1.455652488 0.20322822 0.190305397 217.0880424 1.885963176 57.05641622 1.504324854 1.74E-14 13.75843928 1.455652486 ELTHS(ph)RR ddPTM_HeLa_A486_30min_R1 1 ELTHSRR 7 1 E9PDV9;B3KU01;H0Y8V9;A0A0A0MQU6;Q9H2E6;Q9H2E6-2 E9PDV9 SEMA6A Semaphorin-6A 1 0 ELTHS(1)RR 59.205 0.022708 574140000 413010 489740 379230 119820 566540 453570 467400 496400 404630 460300 TRUE FALSE FALSE 384060.1318 450931.2188 526078.0121 278947.0154 495479.2704 397613.145 350451.5763 383380.5563 439703.6542 345037.8839 1.113095546 1.306903502 1.524696379 0.808453298 1.436014112 1.152375329 1.015690139 1.111125978 1.274363409 1 18.39639525 -5.974870013 0.758581305 1.109081138 1.267939627 0.074191605 0.196359087 1.974668079 2.525489786 0.122744471 0.164955951 1.06E-06 5.974870013 0.15885849 ELTLQPGALTNS(ph)GKR ddPTM_HeLa_A485_30min_R1 1 ELTLQPGALTNSGKR 15 1 Q96R06;F5GZT2;J3KSV2;J3QRV8 Q96R06 SPAG5 Sperm-associated antigen 5 1 0 ELTLQPGALT(0.242)NS(0.758)GKR 94.313 0.00055377 255240000 82459 68703 62145 84909 97222 71209 82711 81647 75357 111520 TRUE FALSE FALSE 100801.7201 76737.21821 85135.02157 89547.36367 87542.23631 74937.39313 65039.11916 61622.94523 90480.45868 83720.11637 1.20403225 0.91659235 1.016900421 1.069603908 1.045653543 0.89509423 0.776863698 0.736059001 1.080749318 1 16.3532867 -6.295215127 5.016897534 0.871953203 1.042755785 0.295898393 0.114470149 0.234919176 15.67960468 0.039939651 0.036008177 5.07E-07 6.295215127 0.170802582 ELTLQPGALTNS(ph)GKR ddPTM_HeLa_A486_30min_R1 1 ELTLQPGALTNSGKR 15 1 Q96R06;F5GZT2;J3KSV2;J3QRV8 Q96R06 SPAG5 Sperm-associated antigen 5 1 0 ELTLQPGALT(0.045)NS(0.955)GKR 143.33 5.42E-08 256790000 118850 118320 75433 39630 102160 105800 126910 113700 93613 175340 TRUE FALSE FALSE 110519.2287 108943.8923 104642.6778 92260.64279 89346.1402 92747.4717 95155.77568 87812.99205 101727.4502 131433.7227 0.840874217 0.828888432 0.796163082 0.701955639 0.679780945 0.705659627 0.72398296 0.668116144 0.773982872 1 17.00397596 -8.036509701 22.92488978 1.000000002 0.741087274 0.640698174 0.057325417 1459.98314 916740.5681 0.062568532 0.016155125 9.19E-09 8.036509701 -0.258912728 ELTNRHS(ph)LPFSLPSQMEPRPDVPR ddPTM_HeLa_A485_30min_R1 2 ELTNRHSLPFSLPSQMEPRPDVPR 24 2 A0A1B0GW38;A0A0U1RQX8;P22681;A0A0U1RR39 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 ELT(0.08)NRHS(0.92)LPFSLPSQMEPRPDVPR;ELT(0.08)NRHS(0.92)LPFSLPSQMEPRPDVPR ; 192.22 2.88E-21 791660000 242470 377560 373770 205754 460740 360510 429230 474790 370820 378240 TRUE FALSE FALSE 296406.615 421712.3577 512043.0769 216993.82 414867.1078 379385.7461 337521.504 358347.0081 445240.1726 283951.729 1.043862688 1.485155097 1.80327508 0.764192635 1.461048007 1.336092397 1.188658034 1.26199974 1.568013599 1 18.11528617 -10.12819927 4.55861289 0.999965551 1.324626848 0.111856841 0.273528325 180371346.7 3.661506592 65222.66955 0.064362212 7.44E-11 10.12819927 0.324661297 ELTNRHS(ph)LPFSLPSQMEPRPDVPR ddPTM_HeLa_A486_30min_R1 2 ELTNRHSLPFSLPSQMEPRPDVPR 24 2 A0A1B0GW38;A0A0U1RQX8;P22681;A0A0U1RR39 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 ELT(0.229)NRHS(0.771)LPFSLPSQMEPRPDVPR;ELT(0.187)NRHS(0.813)LPFSLPSQMEPRPDVPR ; 138.52 4.59E-07 610950000 142190 137255 136012 40596 169935 126673 152013 158402 122456 150666 TRUE FALSE FALSE 132223.2153 126378.4139 188679.4889 94509.53961 148620.1677 111045.3732 113977.7396 122337.3225 133070.5847 112938.2529 1.170756691 1.119004506 1.670642887 0.836824877 1.315941799 0.983239693 1.009204026 1.083223083 1.178259635 1 16.78517469 -5.285655223 24.99930076 1.067153692 1.300021866 0.301895435 0.181465102 1011.342253 1044060.026 0.049585067 0.073589171 5.18E-06 5.285655223 0.232868174 ELTPAS(ph)PTCTNSVSK ddPTM_HeLa_A485_30min_R1 6 ELTPASPTCTNSVSK 15 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 ELTPAS(1)PTCTNSVSK;ELTPAS(0.999)PT(0.001)CTNSVSK;ELTPAS(0.994)PT(0.005)CTNSVSK;ELTPAS(1)PTCTNSVSK;ELTPAS(0.969)PT(0.029)CT(0.001)NSVSK;ELTPAS(0.977)PT(0.017)CT(0.006)NSVSK ;;;;; 449.58 1.28E-192 3215190000 2673326 3089860 2581810 3006470 3419010 3181790 3864060 3931130 2786930 4129660 TRUE FALSE FALSE 3267998.146 3451192.249 3536928.957 3170705.843 3078601.36 3348383.604 3038472.015 2967014.204 3346241.288 3100211.763 1.054120943 1.113211778 1.140866892 1.022738473 0.993029378 1.080049965 0.980085313 0.95703598 1.079358942 1 21.56393533 -5.342557182 6.806619105 1.013993621 1.103538866 0.472207188 0.041999622 0.210184364 14.93200918 0.011860953 0.017687499 4.54E-06 5.342557182 0.089545245 ELTPAS(ph)PTCTNSVSK ddPTM_HeLa_A486_30min_R1 5 ELTPASPTCTNSVSK 15 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 ELTPAS(0.97)PT(0.023)CT(0.006)NSVSK;ELTPAS(0.993)PT(0.005)CT(0.002)NSVSK;ELTPAS(0.875)PT(0.119)CT(0.006)NSVSK;ELTPAS(0.795)PT(0.196)CT(0.009)NSVSK;ELTPAS(0.997)PT(0.003)CTNSVSK ;;;; 248.25 1.23E-41 3664480000 2293550 2423360 1604750 827388 2462120 2277750 2735820 2617250 2020930 2814490 TRUE FALSE FALSE 2132783.989 2231324.128 2226152.177 1926201.078 2153297.951 1996744.363 2051288.899 2021359.309 2196105.84 2109723.385 1.010930629 1.05763824 1.055186757 0.913011199 1.020654161 0.94644842 0.9723023 0.9581158 1.04094492 1 21.00862242 -5.224306568 24.99910507 0.977164609 1.042890532 0.380202235 0.036491779 549.1336497 369695.435 0.009348044 0.016190813 5.97E-06 5.224306568 0.065725923 ELTVDPTAAGDVRPIMHHPPNQIDDLET(ph)QWGVGSSPQRDDLK ddPTM_HeLa_A485_30min_R1 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLK 42 2 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ELTVDPTAAGDVRPIMHHPPNQIDDLET(0.333)QWGVGS(0.333)S(0.333)PQRDDLK 55.772 0.0079689 894680000 39817 41409 33106 60475 57835 45509 61695 66380 39131 77112 TRUE FALSE FALSE 48674.15428 46251.42234 45353.28706 63778.59612 52076.74433 47891.78087 48513.35925 50100.20092 46984.23277 57889.39754 0.840812936 0.798961888 0.783447211 1.101731903 0.899590366 0.827297967 0.838035311 0.865446922 0.81162069 1 15.82101152 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(ph)SPQR ddPTM_HeLa_A485_30min_R1 2 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQR 38 1 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.583)S(0.417)PQR;ELTVDPTAAGDVRPIMHHPPNQIDDLET(0.001)QWGVGS(0.5)S(0.5)PQR ; 186.33 1.55E-21 855250000 211722 313040 312755 260030 294907 259412 260582 253672 252932 327302 TRUE FALSE FALSE 258818.8285 349647.3049 428456.0893 274234.7805 265545.0236 272994.4112 204906.5269 191458.5443 303693.1324 245711.6349 1.053343805 1.422998569 1.743735454 1.116083821 1.08071815 1.111035752 0.833930908 0.779200156 1.235973756 1 17.90660665 -5.480598039 9.55754696 1.001780456 1.412386559 0.451040989 0.197372489 0.46932064 103.3004672 0.057594778 0.084780485 3.31E-06 5.480598039 0.410606103 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(ph)SPQR ddPTM_HeLa_A486_30min_R1 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQR 38 1 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.889)S(0.11)PQR 161.43 1.06E-14 361910000 145570 183090 145160 35434 148470 147490 152330 150170 166700 139590 TRUE FALSE FALSE 135366.2947 168581.2816 201369.8395 82492.14274 129847.5082 129294.1834 114215.4228 115979.5692 181149.6902 104635.7554 1.293690614 1.611125001 1.924484023 0.788374322 1.240947778 1.235659673 1.091552523 1.108412404 1.731240812 1 16.6750164 -5.255368565 24.99991006 1.177713955 1.609902369 0.363376005 0.266100633 550.3646534 2266422.025 0.071969136 0.120643879 5.55E-06 5.255368565 0.432188414 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSS(ph)PQR ddPTM_HeLa_A486_30min_R1 2 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQR 38 1 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.005)S(0.995)PQR;ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.012)S(0.988)PQR ; 212.08 2.23E-30 944250000 199986 249420 172201 55538 202857 208040 201550 175622 213460 209511 TRUE FALSE FALSE 185968.0141 229655.0508 238881.8389 129295.2707 177412.7835 182374.14 151120.0582 135636.7044 231962.8847 157048.0819 1.184146994 1.462323182 1.52107454 0.823284622 1.129671763 1.161263084 0.962253447 0.863663553 1.47701826 1 17.2608468 -5.249857295 24.99843195 1.057013164 1.396495739 0.386519855 0.190194584 747.4860472 1613349.132 0.050414071 0.086369886 5.63E-06 5.249857295 0.339482575 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSS(ph)PQRDDLK ddPTM_HeLa_A485_30min_R1 1 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLK 42 2 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.049)S(0.951)PQRDDLK 165 6.10E-16 543820000 241380 176930 179310 273900 290930 270290 321280 309700 239430 409090 TRUE FALSE FALSE 295074.1482 197620.4244 245644.2307 288862.4634 261963.9877 284441.9665 252635.9034 233745.5894 287481.4048 307111.3917 0.960804959 0.643481257 0.799853855 0.940578797 0.852993392 0.926185007 0.822619773 0.761110124 0.936081867 1 18.2284025 -14 0.186814097 1.663697359 0.813718896 0.200792247 0.092886613 223.5666363 2.176207329 55.09671782 0.267771049 1.00E-14 14 -0.849978463 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSS(ph)PQRDDLK ddPTM_HeLa_A486_30min_R1 2 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLK 42 2 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.14)S(0.86)PQRDDLK;ELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.243)S(0.757)PQRDDLK ; 198.84 8.92E-31 2763400000 1148150 1319370 706690 525410 1134430 1310420 1759050 1512690 1028970 1488390 TRUE FALSE FALSE 1067670.614 1214818.316 980339.2938 1223181.033 992139.2113 1148753.704 1318917.085 1168283.509 1118161.948 1115687.456 0.956962103 1.088851819 0.87868631 1.096347392 0.889262675 1.029637554 1.182156416 1.047142282 1.002217908 1 20.0895015 -6.520551961 24.99941059 1.068106144 0.985655829 0.157212589 0.081783945 158.3688788 1701586.769 0.029494421 0.023239082 3.02E-07 6.520551961 -0.082450315 ELVEPLT(ph)PSGEAPNQALLR ddPTM_HeLa_A485_30min_R1 4 ELVEPLTPSGEAPNQALLR 19 0 Q504U8;E9PFD7;P00533 Q504U8 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor 1 0 ELVEPLT(0.997)PS(0.003)GEAPNQALLR;ELVEPLT(0.99)PS(0.01)GEAPNQALLR;ELVEPLT(0.969)PS(0.031)GEAPNQALLR;ELVEPLT(0.974)PS(0.026)GEAPNQALLR ;;; 310.28 8.71E-89 580110000 708001 776770 460244 586597 438092 629543 739690 685756 518054 1058570 TRUE FALSE FALSE 865493.3799 867606.4945 630507.408 618641.3088 394474.0222 662504.898 581649.1888 517573.2658 622022.6859 794687.9805 1.089098364 1.091757414 0.793402472 0.7784707 0.49638856 0.83366669 0.731921462 0.651291171 0.782725675 1 19.600029 -4.809310379 3.543610945 0.733662111 1.100269972 0.539089947 0.122085996 0.149380889 3.79668259 0.031209351 0.07961951 1.55E-05 4.809310379 0.366607861 ELVEPLT(ph)PSGEAPNQALLR ddPTM_HeLa_A486_30min_R1 2 ELVEPLTPSGEAPNQALLR 19 0 Q504U8;E9PFD7;P00533 Q504U8 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor 1 0 ELVEPLT(0.996)PS(0.004)GEAPNQALLR;ELVEPLT(0.999)PS(0.001)GEAPNQALLR ; 171.29 5.31E-12 209611000 206220 216256 205122 48192 277900 199849 170418 169986 226190 254490 TRUE FALSE FALSE 191765.0429 199119.087 284550.7318 112193.4115 243043.1907 175193.6623 127777.6139 131283.8986 245796.3313 190764.0475 1.005247296 1.043797768 1.491637106 0.588126604 1.274051341 0.918378827 0.669820207 0.688200425 1.288483519 1 17.54142977 -6.500538667 24.04541009 0.872565139 1.076228627 0.081665579 0.26839436 1059.264223 1140125.969 0.093060702 0.081356913 3.16E-07 6.500538667 0.203663488 ELVGPPLAETVFT(ph)PK ddPTM_HeLa_A485_30min_R1 4 ELVGPPLAETVFTPK 15 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK ;;; 193.77 9.32E-18 488357000 448594 342884 286100 607340 378503 350978 474673 342431 315643 722840 TRUE FALSE FALSE 548382.1877 382981.3011 391940.2956 640517.4463 340817.9123 369354.6654 373255.2358 258449.2603 378989.6549 542649.2909 1.010564644 0.705762096 0.722271829 1.180352499 0.628062946 0.680650784 0.687838798 0.476273101 0.698406247 1 19.04966057 ELVGPPLAETVFT(ph)PK ddPTM_HeLa_A486_30min_R1 4 ELVGPPLAETVFTPK 15 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAETVFT(1)PK ;;; 218.2 8.32E-33 842624000 417696.7 394473.4 159156.8 157776.4 254355.1 397280 432563.6 370108.7 321125.3 572415.4 TRUE FALSE FALSE 388418.3183 363213.8911 220786.5753 367311.4328 222451.5116 348267.6328 324331.6121 285843.0284 348960.6996 429078.858 0.905237606 0.846496825 0.514559436 0.856046449 0.518439693 0.811663465 0.755878799 0.66617831 0.813278709 1 18.71088329 -8.057739119 6.158622237 0.999986259 0.731173354 0.284993628 0.127553721 0.562034249 57.24637655 0.118863776 0.030835397 8.76E-09 8.057739119 -0.268812906 ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR ddPTM_HeLa_A485_30min_R1 4 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 ELVGPPLAET(0.027)VFT(0.973)PKT(0.528)S(0.472)PENVQDR;ELVGPPLAETVFT(1)PKT(0.943)S(0.057)PENVQDR;ELVGPPLAET(0.038)VFT(0.958)PKT(0.523)S(0.481)PENVQDR;ELVGPPLAET(0.038)VFT(0.962)PKT(0.854)S(0.146)PENVQDR ;;; 194.27 2.86E-21 1109931000 348600 355043 264503 522421 473439 398322 587538 512268 308872 701059 TRUE FALSE FALSE 426144.8673 396562.1904 362353.6666 550959.5364 426301.7508 419177.524 462005.7066 386633.4698 370859.7773 526297.8933 0.80970278 0.753493783 0.688495377 1.046858715 0.810000869 0.796464378 0.877840691 0.734628572 0.704657537 1 19.00552009 ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR ddPTM_HeLa_A486_30min_R1 2 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 ELVGPPLAETVFT(0.999)PKT(0.605)S(0.396)PENVQDR;ELVGPPLAETVFT(0.998)PKT(0.534)S(0.467)PENVQDR ; 100.68 0.00079542 301687000 115746 116281 80392 74154 127564 128270 181235 172020 92536 189259 TRUE FALSE FALSE 107632.8031 107066.4701 111521.9354 172634.2595 111563.7336 112445.3516 135888.0861 132854.8012 100557.095 141867.3145 0.758686407 0.754694416 0.786100278 1.216871272 0.786394907 0.792609291 0.957853375 0.936472235 0.708810872 1 17.11418271 -5.027213415 24.99310846 0.910512964 0.760116975 0.209201611 0.132211986 1104.130009 1014045.657 0.03586923 0.062357216 9.39E-06 5.027213415 -0.150395989 ELVGPPLAETVFT(ph)PKTS(ph)PENVQDR ddPTM_HeLa_A486_30min_R1 3 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 ELVGPPLAET(0.001)VFT(0.999)PKT(0.193)S(0.807)PENVQDR;ELVGPPLAETVFT(1)PKT(0.223)S(0.777)PENVQDR;ELVGPPLAET(0.008)VFT(0.99)PKT(0.207)S(0.796)PENVQDR ;; 121.7 2.80E-05 1150810000 292990 289450 164492 195508 311185 325143 461452 454574 230080 488128 TRUE FALSE FALSE 272452.914 266512.9278 228187.7076 455152.5044 272153.2756 285030.1625 345991.8289 351077.4235 250023.5197 365897.5716 0.744615256 0.728381242 0.623638213 1.243934204 0.743796343 0.778988943 0.9455975 0.959496457 0.683315603 1 18.48108032 ELVHYYEQT(ph)SDMMTDAVNENR ddPTM_HeLa_A485_30min_R1 1 ELVHYYEQTSDMMTDAVNENR 21 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ELVHY(0.001)Y(0.001)EQT(0.893)S(0.105)DMMT(0.001)DAVNENR 76.198 0.0053883 100090000 27309 25122 31378 33481 31185 32102 36941 32144 26380 33267 TRUE FALSE FALSE 33383.79284 28059.79937 42986.02795 35309.98225 28080.1119 33782.81108 29048.25357 24260.6336 31674.22403 24974.14913 1.336733943 1.123553768 1.72122092 1.413861272 1.124367111 1.352711193 1.163132862 0.971429836 1.268280407 1 14.60814791 -6.570421266 1.030066951 1.077556833 1.381520824 0.331302202 0.172824674 0.65736452 1.425551279 0.116546111 0.078757108 2.69E-07 6.570421266 0.30396399 ELVHYYEQT(ph)SDMMTDAVNENR ddPTM_HeLa_A486_30min_R1 1 ELVHYYEQTSDMMTDAVNENR 21 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ELVHY(0.002)Y(0.002)EQT(0.585)S(0.409)DMMT(0.002)DAVNENR 65.428 0.013184 98692000 28492 32588 35399 18199 34377 40494 33827 41373 33684 53995 TRUE FALSE FALSE 26494.85793 30005.6082 49106.44082 42368.19173 30065.11611 35498.26199 25363.12681 31953.27107 36603.75624 40474.30055 0.654609408 0.741349641 1.2132746 1.046792437 0.742819905 0.877056836 0.626647687 0.789470618 0.904370322 1 15.30471853 -5.781397989 24.99637378 0.805713572 0.923050252 0.056282891 0.171310312 642.4584252 804617.9625 0.056602419 0.06426285 1.65E-06 5.781397989 0.11733668 ELVHYYEQTS(ph)DMMTDAVNENR ddPTM_HeLa_A485_30min_R1 1 ELVHYYEQTSDMMTDAVNENR 21 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ELVHYYEQT(0.217)S(0.775)DMMT(0.008)DAVNENR 98.967 0.00036888 105060000 27122 35977 38741 41895 47773 35613 35541 37279 26254 39895 TRUE FALSE FALSE 33155.19533 40184.19719 53072.90805 44183.61777 43016.55238 37477.64161 27947.37501 28136.2668 31522.93698 29949.91071 1.107021508 1.341713422 1.772055635 1.4752504 1.436283159 1.251344018 0.933137173 0.939444096 1.052521902 1 14.87026408 -6.556234327 2.894113187 0.975495365 1.442309939 0.640716297 0.156480298 0.177563767 3.036188896 0.069512739 0.053783412 2.78E-07 6.556234327 0.466814574 ELVHYYEQTS(ph)DMMTDAVNENR ddPTM_HeLa_A486_30min_R1 1 ELVHYYEQTSDMMTDAVNENR 21 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ELVHYYEQT(0.026)S(0.973)DMMT(0.001)DAVNENR 170.65 6.50E-14 92512000 35510 36361 39784 21041 51926 39062 47309 42971 30453 41896 TRUE FALSE FALSE 33020.93237 33479.62194 55189.43025 48984.51135 45412.95689 34242.92759 35471.78782 33187.44135 33092.69056 31404.9689 1.051455662 1.066061299 1.757347075 1.559769459 1.446043683 1.09036655 1.129496034 1.056757657 1.053740593 1 14.93870522 -6.270992333 21.1989952 1.073583295 1.39028941 0.376444181 0.19899618 105.7138686 234587.0772 0.07712813 0.069186692 5.36E-07 6.270992333 0.316706116 ELVLDNS(ph)R ddPTM_HeLa_A486_30min_R1 2 ELVLDNSR 8 0 P39687;H0YN26;H7BZ09 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 1 0 ELVLDNS(1)R;ELVLDNS(1)R ; 104.82 0.0014618 126752000 316010 400840 381370 101523 474920 375660 377990 400590 371870 375980 TRUE FALSE FALSE 293859.3309 369075.9786 529046.6774 236350.6747 415351.1051 329314.8886 283412.904 309384.4018 404103.991 281832.1608 1.042674938 1.309559482 1.877169291 0.838622086 1.4737534 1.168478742 1.005608811 1.097761167 1.433846265 1 18.10447673 -5.993793558 1.257555426 1.14432831 1.341089168 0.064176947 0.280146425 1.287891613 4.248284735 0.123255192 0.141137142 1.01E-06 5.993793558 0.196760858 ELVPDQAVISDSTFSLANS(ph)PGSESVTK ddPTM_HeLa_A485_30min_R1 1 ELVPDQAVISDSTFSLANSPGSESVTK 27 0 Q12802-2;Q12802;Q12802-4;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 ELVPDQAVISDSTFSLANS(0.99)PGS(0.009)ES(0.001)VTK 83.701 0.0038245 24524000 26758 27290 24017 39685 34054 26347 37458 25660 29017 48174 TRUE FALSE FALSE 32710.22479 30481.32811 32901.88773 41852.89106 30663.46419 27726.48818 29454.7923 19366.84477 34840.44574 36165.10838 0.904469149 0.842838014 0.909768813 1.157272657 0.847874251 0.766664042 0.814453312 0.535511869 0.963371805 1 15.14231085 -5.990380851 24.99646931 0.789139229 0.950049982 0.164896338 0.140864423 316.421372 822251.7775 0.043154385 0.0488735 1.02E-06 5.990380851 0.160910753 ELVSSSSSGSDS(ph)DSEVDKK ddPTM_HeLa_A485_30min_R1 4 ELVSSSSSGSDSDSEVDKK 19 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 ELVSSSSSGSDS(0.999)DS(0.001)EVDKK;ELVSSSSSGS(0.001)DS(0.999)DSEVDKK;ELVSSSSSGS(0.021)DS(0.979)DSEVDKK;ELVSSSSSGSDS(0.998)DS(0.001)EVDKK ;;; 309.82 1.09E-89 3942410000 1148540 779020 453367 2491890 995000 1138870 1961510 1712710 745290 3153220 TRUE FALSE FALSE 1404028.761 870119.6124 621086.3195 2628015.641 895934.3063 1198499.472 1542417.364 1292665.187 894862.8668 2367180.285 0.593122868 0.367576402 0.262373898 1.110188209 0.378481653 0.50629835 0.651584239 0.546078047 0.37802903 1 21.17473816 -10.11952262 3.950529764 1.000126292 0.535405262 0.282032342 0.223667249 168015215.9 312242781.3 333562.8135 0.055129995 7.59E-11 10.11952262 -0.46472103 ELVSSSSSGSDS(ph)DSEVDKK ddPTM_HeLa_A486_30min_R1 3 ELVSSSSSGSDSDSEVDKK 19 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 ELVSSS(0.001)SS(0.002)GS(0.219)DS(0.776)DS(0.002)EVDKK;ELVSSSSSGS(0.001)DS(0.999)DSEVDKK;ELVSSSSSGS(0.008)DS(0.991)DSEVDKK ;; 243.24 5.91E-46 2879760000 812270 807300 304407 657290 665060 1040090 1375870 1244450 623730 1881310 TRUE FALSE FALSE 755334.0676 743326.6079 422281.5427 1530204.338 581641.9734 911774.2707 1031612.774 961115.9012 677795.4186 1410217.731 0.535615211 0.527100597 0.299444216 1.085083746 0.412448348 0.64654858 0.731527303 0.681537241 0.480631752 1 20.42748649 -14 0.194352206 2.675345307 0.539991854 0.254422789 0.203354299 198.300628 1.950030953 129.5072625 0.514597052 1.00E-14 14 -2.135353453 EMDMSPEEVVAS(ph)PR ddPTM_HeLa_A485_30min_R1 3 EMDMSPEEVVASPR 14 0 Q13049 Q13049 TRIM32 E3 ubiquitin-protein ligase TRIM32 1 0 EMDMSPEEVVAS(1)PR;EMDMSPEEVVAS(1)PR;EMDMSPEEVVAS(1)PR ;; 226.14 6.15E-28 1120009000 456239 557392 496443 428147 571142 501723 590464 595696 439470 544360 TRUE FALSE FALSE 557727.7915 622574.1457 680097.9244 451535.5865 514277.0971 527992.4405 464306.5428 449600.622 527667.5979 408661.0702 1.364768587 1.523448626 1.664210207 1.104914609 1.258444062 1.292005721 1.136165338 1.10017972 1.291210826 1 18.64054529 -5.268796885 24.99912746 1.180648146 1.518073092 0.674904401 0.110628791 325.6440759 1106464.022 0.030802969 0.046721993 5.39E-06 5.268796885 0.337424946 EMDMSPEEVVAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 EMDMSPEEVVASPR 14 0 Q13049 Q13049 TRIM32 E3 ubiquitin-protein ligase TRIM32 1 0 EMDMSPEEVVAS(1)PR;EMDMSPEEVVAS(1)PR;EMDMSPEEVVAS(1)PR;EMDMSPEEVVAS(1)PR ;;; 221.78 9.59E-28 918474000 793893 647203 497535 188892 738098 648104 791147 767872 580104 798405 TRUE FALSE FALSE 738245.2004 595916.2772 690193.8764 439750.1221 645518.8663 568147.5179 593193.6527 593044.3081 630387.8818 598479.1913 1.233535286 0.995717622 1.153246239 0.734779301 1.078598681 0.94931875 0.991168384 0.990918844 1.053316291 1 19.19094156 -3.267282233 1.163270967 0.983082212 2.999037016 0.329321958 0.102571998 15.45625295 2.95983092 0.029123074 64.96456121 0.000540403 3.267282233 2.015954804 EMDTART(ph)PLSEAEFEEIMNR ddPTM_HeLa_A485_30min_R1 4 EMDTARTPLSEAEFEEIMNR 20 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 EMDT(0.002)ART(0.998)PLSEAEFEEIMNR;EMDTART(1)PLSEAEFEEIMNR;EMDT(0.008)ART(0.992)PLSEAEFEEIMNR;EMDT(0.008)ART(0.992)PLSEAEFEEIMNR ;;; 305.69 1.79E-87 1729800000 712020 924330 899240 951860 1079200 884430 1117020 1183420 798740 1184670 TRUE FALSE FALSE 870406.3926 1032422.353 1231906.296 1003857.702 971751.0587 930737.3872 878359.5518 893184.3895 959039.7915 889353.5712 0.978695561 1.160868283 1.385170461 1.12874984 1.09264874 1.046532467 0.98763819 1.004307419 1.078356036 1 19.76239757 -5.947398713 2.189331052 1.021394167 1.180454084 0.325858016 0.094993012 0.3685506 3.581858451 0.035475324 0.040193913 1.13E-06 5.947398713 0.159059917 EMDTART(ph)PLSEAEFEEIMNR ddPTM_HeLa_A486_30min_R1 4 EMDTARTPLSEAEFEEIMNR 20 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 EMDT(0.031)ART(0.96)PLS(0.009)EAEFEEIMNR;EMDT(0.034)ART(0.966)PLSEAEFEEIMNR;EMDT(0.002)ART(0.997)PLS(0.001)EAEFEEIMNR;EMDT(0.005)ART(0.995)PLSEAEFEEIMNR ;;; 340.12 2.04E-114 1652030000 625740 660290 561040 291379 763390 640370 739690 762420 501445 740850 TRUE FALSE FALSE 581878.8573 607966.2157 778289.7132 678345.0375 667638.5079 561367.6602 554611.7384 588833.6095 544910.6563 555336.3379 1.047795395 1.094771176 1.401474494 1.221503063 1.202223702 1.010860666 0.998695206 1.06031889 0.981226365 1 19.08300227 -6.261172339 23.42399105 1.013269829 1.20116958 0.514368393 0.088890715 8.988445702 788469.3898 0.032516917 0.030591335 5.48E-07 6.261172339 0.187899751 EMEDKVT(ph)SPEKAEEAK ddPTM_HeLa_A485_30min_R1 3 EMEDKVTSPEKAEEAK 16 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 EMEDKVT(0.84)S(0.16)PEKAEEAK;EMEDKVT(0.982)S(0.018)PEKAEEAK;EMEDKVT(0.5)S(0.5)PEKAEEAK ;; 134.06 7.29E-08 1747840000 833830 449509 213500 1960650 432375 591291 1172320 904500 359486 2337170 TRUE FALSE FALSE 1019312.607 502075.1673 292482.5345 2067755.345 389326.2268 622250.0825 921844.255 682669.9568 431631.5428 1754556.531 0.580951704 0.286155025 0.166698838 1.178505969 0.221894376 0.354648067 0.525400144 0.389084047 0.246006062 1 20.742675 -10.41318273 3.030142361 1.00932217 0.440306445 0.270068815 0.276767397 74217563.27 91430096.44 5982747.189 0.070102231 3.86E-11 10.41318273 -0.569015726 EMEDKVT(ph)SPEKAEEAK ddPTM_HeLa_A486_30min_R1 1 EMEDKVTSPEKAEEAK 16 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 EMEDKVT(0.643)S(0.357)PEKAEEAK 162.85 6.88E-12 1087500000 721410 456650 93278 587680 225880 768670 1085200 759640 321020 2087900 TRUE FALSE FALSE 670842.8844 420463.3909 129397.7397 1368148.74 197548.0242 673839.3107 813671.4819 586686.5548 348846.2721 1565076.25 0.428632716 0.268653614 0.082678234 0.874173856 0.12622262 0.430547272 0.51989255 0.374861324 0.222894106 1 20.57780152 -10.79373143 2.730446097 1.171563352 0.372432303 0.438405492 0.213948398 66998067.95 51374716.63 76454822.38 0.052655375 1.61E-11 10.79373143 -0.799131049 EMEDKVTS(ph)PEKAEEAK ddPTM_HeLa_A485_30min_R1 1 EMEDKVTSPEKAEEAK 16 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 EMEDKVT(0.074)S(0.926)PEKAEEAK 101.17 0.00020137 593640000 141780 78612 32275 335160 82735 113430 212630 159730 65116 422160 TRUE FALSE FALSE 173318.4719 87804.98957 44214.86557 353468.9421 74497.6129 119369.0194 167199.8635 120555.9671 78184.18392 316923.2813 0.546878321 0.2770544 0.139512835 1.115313904 0.235065132 0.376649576 0.527572045 0.380394796 0.246697509 1 18.27377412 -10.05545044 4.455974293 1.000033032 0.429028772 0.303508004 0.260284016 689377304 1676753051 378018.6225 0.063849174 8.80E-11 10.05545044 -0.571004261 EMEDKVTS(ph)PEKAEEAK ddPTM_HeLa_A486_30min_R1 2 EMEDKVTSPEKAEEAK 16 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 EMEDKVT(0.137)S(0.863)PEKAEEAK;EMEDKVT(0.432)S(0.568)PEKAEEAK ; 106.86 0.00017098 787840000 466690 315110 85386 372880 184252 492380 697300 539460 231373 1380450 TRUE FALSE FALSE 433977.441 290139.536 118449.7459 868083.4843 161141.3961 431635.1618 522828.1647 416636.7343 251428.5979 1034776.335 0.419392507 0.280388647 0.114468936 0.838909294 0.155725823 0.417128946 0.505257172 0.402634579 0.24297869 1 19.98088753 -10.93463798 2.774247494 1.409821112 0.377799034 0.480954508 0.194701432 47219499.11 30794064.2 125503981.8 0.046502517 1.16E-11 10.93463798 -1.032022078 EMEEVLTVT(ph)ET(ph)S(ph)QGLSFEY(ph)VWEAAK ddPTM_HeLa_A485_30min_R1 2 EMEEVLTVTETSQGLSFEYVWEAAK 25 0 Q8IWU2 Q8IWU2 LMTK2 Serine/threonine-protein kinase LMTK2 4 0 EMEEVLT(0.644)VT(0.687)ET(0.698)S(0.692)QGLS(0.602)FEY(0.677)VWEAAK;EMEEVLT(0.643)VT(0.687)ET(0.699)S(0.692)QGLS(0.601)FEY(0.677)VWEAAK ; 56.533 0.018147 1435960000 153448 240606 213708 69272 186814 220090 143173 234910 252000 89128 TRUE FALSE FALSE 187581.9782 268742.7787 292767.4823 73056.15395 168214.1422 231613.5721 112582.9189 177297.9542 302574.0885 66910.02988 2.803495658 4.016479729 4.375539555 1.091856544 2.51403478 3.461567309 1.682601534 2.649796368 4.522103623 1 16.02993487 -5.235485058 24.98598865 2.503078094 3.760302423 0.240296543 1.063033807 1156.729344 1113571.373 0.284861896 0.493186501 5.81E-06 5.235485058 1.257224329 EMEHAMLIRHDESTR ddPTM_HeLa_A486_30min_R1 1 EMEHAMLIRHDESTR 15 1 G3V1Q8;Q9H2K8 G3V1Q8 TAOK3 Serine/threonine-protein kinase TAO3 0 0 42.317 0.026037 646480000 195630 155360 101650 41296 188910 142900 214610 235340 94730 217880 FALSE FALSE TRUE 181917.3472 143048.7078 141011.6023 96139.17498 165215.1463 125270.4509 160912.3081 181758.2194 102941.2727 163321.4298 1.113860853 0.875872247 0.863399264 0.588650094 1.011595027 0.767017843 0.9852492 1.112886531 0.630298625 1 17.31735458 -6.790235057 24.99245816 0.941515779 0.863668189 0.027884802 0.173539933 825.5588923 716514.926 0.071555982 0.048252672 1.62E-07 6.790235057 -0.077847591 EMEHNTVCAAGT(ph)SPVGEIGEEK ddPTM_HeLa_A485_30min_R1 1 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 EMEHNTVCAAGT(0.685)S(0.315)PVGEIGEEK 164.62 2.10E-13 380980000 290970 303950 234960 247910 419630 296340 459280 454720 294970 472880 TRUE FALSE FALSE 355695.2727 339494.3085 321881.4815 261452.6956 377850.1638 311855.9042 361151.076 343199.207 354167.7734 354999.7187 1.001959308 0.956322753 0.906709117 0.73648705 1.064367502 0.878468032 1.017327781 0.966759096 0.99765649 1 18.43745836 -6.653283237 1.41336838 0.993447006 0.918406601 0.12000599 0.082804099 0.937849617 3.819716986 0.047351315 0.030713977 2.22E-07 6.653283237 -0.075040405 EMEHNTVCAAGT(ph)SPVGEIGEEK ddPTM_HeLa_A486_30min_R1 1 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 EMEHNT(0.003)VCAAGT(0.499)S(0.499)PVGEIGEEK 86.539 0.0049415 202940000 69895 76838 40696 22612 67355 70025 96282 88994 57008 100840 TRUE FALSE FALSE 64995.72144 70749.07704 56454.58108 52641.87875 58906.70784 61386.02746 72191.22523 68732.00893 61949.49934 75589.00764 0.85985679 0.935970444 0.746862313 0.696422408 0.779302569 0.812102571 0.955049252 0.909285769 0.819556987 1 16.20588883 -6.69600987 7.49843385 0.913210608 0.801731632 0.371141097 0.073583988 0.293910774 28.56140888 0.030779903 0.023688658 2.01E-07 6.69600987 -0.111478977 EMEHNTVCAAGTS(ph)PVGEIGEEK ddPTM_HeLa_A485_30min_R1 10 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 EMEHNTVCAAGT(0.004)S(0.996)PVGEIGEEK;EMEHNTVCAAGT(0.176)S(0.824)PVGEIGEEK;EMEHNTVCAAGT(0.005)S(0.995)PVGEIGEEK;EMEHNTVCAAGT(0.091)S(0.909)PVGEIGEEK;EMEHNTVCAAGT(0.03)S(0.97)PVGEIGEEK;EMEHNTVCAAGT(0.114)S(0.886)PVGEIGEEK;EMEHNTVCAAGT(0.001)S(0.999)PVGEIGEEK;EMEHNTVCAAGT(0.057)S(0.943)PVGEIGEEK;EMEHNTVCAAGT(0.077)S(0.923)PVGEIGEEK;EMEHNTVCAAGT(0.441)S(0.559)PVGEIGEEK ;;;;;;;;; 265.78 1.01E-59 17565950000 6863052 7469339 6371963 6732515 10308950 7905360 11919490 11483470 7551297 11616870 TRUE FALSE FALSE 8389714.24 8342813.221 8729217.273 7100295.247 9282554.741 8319272.426 9372793.588 8667130.977 9066773.043 8720998.102 0.96201308 0.956635138 1.000942458 0.814160852 1.064391327 0.953935814 1.074738634 0.993823284 1.039648551 1 23.05606183 EMEHNTVCAAGTS(ph)PVGEIGEEK ddPTM_HeLa_A486_30min_R1 8 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 EMEHNTVCAAGT(0.005)S(0.995)PVGEIGEEK;EMEHNTVCAAGT(0.015)S(0.985)PVGEIGEEK;EMEHNTVCAAGT(0.069)S(0.931)PVGEIGEEK;EMEHNTVCAAGT(0.051)S(0.949)PVGEIGEEK;EMEHNTVCAAGT(0.008)S(0.992)PVGEIGEEK;EMEHNTVCAAGT(0.277)S(0.723)PVGEIGEEK;EMEHNTVCAAGT(0.036)S(0.964)PVGEIGEEK;EMEHNTVCAAGT(0.027)S(0.973)PVGEIGEEK ;;;;;;; 255.84 2.95E-59 14094070000 8756910 8723910 5440867 726948 9485460 8480350 10812830 10375460 7558682 8503550 TRUE FALSE FALSE 8143095.83 8032595.6 7547716.414 1692371.682 8295705.158 7434130.639 8107345.568 8013194.253 8213874.642 6374205.731 1.277507532 1.260172002 1.184103045 0.265503147 1.301449233 1.166283448 1.271898949 1.257128275 1.288611474 1 22.60381415 EMEKGS(ph)PSLRH ddPTM_HeLa_A485_30min_R1 2 EMEKGSPSLRH 11 2 B9A071;Q9P2M4-2;Q9P2M4;F5GXK4 B9A071 TBC1D14 TBC1 domain family member 14 1 0 EMEKGS(1)PSLRH;EMEKGS(1)PSLRH ; 169.17 1.77E-08 500520000 297170 381380 332830 272880 493590 423110 540010 640880 343790 426860 TRUE FALSE FALSE 363274.4413 425979.0734 455957.6672 287786.7434 444446.4465 445263.3853 424632.452 483703.1751 412785.4996 320451.6578 1.133632585 1.329308378 1.422859443 0.898066015 1.386937579 1.389486915 1.325106117 1.50944195 1.288136571 1 18.28974721 EMEKGS(ph)PSLRH ddPTM_HeLa_A486_30min_R1 4 EMEKGSPSLRH 11 2 B9A071;Q9P2M4-2;Q9P2M4;F5GXK4 B9A071 TBC1D14 TBC1 domain family member 14 1 0 EMEKGS(1)PSLRH;EMEKGS(1)PSLRH;EMEKGS(0.977)PS(0.023)LRH;EMEKGS(0.998)PS(0.002)LRH ;;; 156.6 1.22E-07 530281000 511909 518376 369764 85056 599158 487405 598616 578984 413141 491123 TRUE FALSE FALSE 476026.8226 477297.9979 512946.5234 198014.6665 524006.0167 427273.9267 448835.9453 447161.9823 448952.3945 368142.6041 1.293050077 1.29650302 1.393336489 0.5378749 1.423377818 1.160620699 1.219190445 1.214643394 1.21950676 1 18.48990519 EMEKS(ph)FDEQNVPK ddPTM_HeLa_A485_30min_R1 2 EMEKSFDEQNVPK 13 1 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 EMEKS(1)FDEQNVPK;EMEKS(1)FDEQNVPK ; 215.23 1.33E-23 729390000 688130 580950 343060 1638900 1055220 823920 1785660 2191840 982050 3100200 TRUE FALSE FALSE 841202.1445 648887.0489 469972.1699 1728428.957 950158.5917 867059.1772 1404139.153 1654287.803 1179138.427 2327377.195 0.361437822 0.278806139 0.201932102 0.742650981 0.408252944 0.372547767 0.603313961 0.710794884 0.506638301 1 21.15027361 -10.7235221 0.106116628 1.914214787 1.36E-13 0.633788893 0.140909969 42.94978106 0.705602307 12.61980664 2.68585839 1.89E-11 10.7235221 -1.914214787 EMEKS(ph)FDEQNVPK ddPTM_HeLa_A486_30min_R1 2 EMEKSFDEQNVPK 13 1 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 EMEKS(1)FDEQNVPK;EMEKS(1)FDEQNVPK ; 183.7 1.79E-17 716210000 1697150 1470850 478320 1596410 1366440 2921700 4300200 4503900 1330520 4208400 TRUE FALSE FALSE 1578188.549 1354294.489 663538.3139 3716523.158 1195048.354 2561250.36 3224244.477 3478460.289 1445850.545 3154589.248 0.500283373 0.429309296 0.210340638 1.178132196 0.378828513 0.811912474 1.022080602 1.102666628 0.458332427 1 21.58902074 -5.248403967 24.95935142 0.840472789 0.384910917 0.417538811 0.254344087 774.7539015 1483445.292 0.068309426 0.117399053 5.64E-06 5.248403967 -0.455561872 EMFPYEAS(ph)TPTGISASCR ddPTM_HeLa_A485_30min_R1 1 EMFPYEASTPTGISASCR 18 0 G5E972;P42167;H0YJH7;P42167-2 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPYEAS(0.678)T(0.305)PT(0.017)GISASCR 149.09 3.65E-08 156600000 117920 125240 97014 89680 122330 100510 107400 128100 103280 175590 TRUE FALSE FALSE 144150.8972 139885.7286 132903.5157 94578.99132 110150.3957 105772.5482 84453.11262 96683.27415 124007.3487 131818.6445 1.093554692 1.061198354 1.008230028 0.717493278 0.835620758 0.802409618 0.640676537 0.733456747 0.940742102 1 17.00819491 -5.126688472 4.409026584 0.793156471 1.068846564 0.555727477 0.100204457 0.155717979 4.846810202 0.027256949 0.049531914 7.47E-06 5.126688472 0.275690093 EMFPYEAS(ph)TPTGISASCR ddPTM_HeLa_A486_30min_R1 1 EMFPYEASTPTGISASCR 18 0 G5E972;P42167;H0YJH7;P42167-2 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPY(0.009)EAS(0.538)T(0.451)PT(0.002)GISASCR 68.944 0.0031029 0 145210 136100 137160 32713 183780 124270 122000 101610 139650 119230 TRUE FALSE FALSE 135031.5289 125314.9403 190272.0253 76157.51722 160728.5987 108938.8309 91474.30962 78475.62113 151754.9744 89374.03194 1.510858646 1.402140394 2.128940825 0.85212131 1.798381423 1.218909212 1.023499865 0.878058418 1.697976147 1 16.44756809 -6.452328579 8.204706395 1.137012225 1.524949172 0.211050122 0.363454114 0.532173896 57.26726606 0.123574622 0.108599482 3.53E-07 6.452328579 0.387936948 EMFPYEAST(ph)PTGISASCR ddPTM_HeLa_A485_30min_R1 2 EMFPYEASTPTGISASCR 18 0 G5E972;P42167;H0YJH7;P42167-2 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPYEAS(0.254)T(0.722)PT(0.023)GISASCR;EMFPYEAS(0.261)T(0.737)PT(0.002)GISASCR ; 169.67 5.00E-14 375000000 347290 383740 301400 320360 379620 322910 345640 415540 310590 567850 TRUE FALSE FALSE 424543.4624 428615.0549 412900.4023 337860.4556 341823.6999 339817.0683 271791.1904 313628.1635 372922.5641 426295.4455 0.995890214 1.005441319 0.968578029 0.792550001 0.801846943 0.797139805 0.637565316 0.735706109 0.874798378 1 18.70149412 -5.226995225 3.625345255 0.785710921 0.998331762 0.467339501 0.088796562 0.185192112 5.183961103 0.024842802 0.043714756 5.93E-06 5.226995225 0.212620841 EMFPYEAST(ph)PTGISASCR ddPTM_HeLa_A486_30min_R1 1 EMFPYEASTPTGISASCR 18 0 G5E972;P42167;H0YJH7;P42167-2 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPYEAS(0.102)T(0.872)PT(0.025)GISASCR 131.45 3.70E-05 81814000 169060 153130 133570 47210 187500 123400 136620 135370 125060 137740 TRUE FALSE FALSE 157209.767 140995.4211 185291.8811 109907.2659 163982.0016 108176.1626 102436.231 104549.2061 135900.3015 103249.0075 1.522627393 1.365586213 1.794611742 1.064487384 1.588218673 1.04772109 0.992127997 1.012592844 1.316238333 1 16.65576839 -6.271719731 24.45252243 1.06942257 1.457293308 0.508532792 0.193213089 441.3237643 1049715.658 0.0652845 0.058229575 5.35E-07 6.271719731 0.387870738 EMFPYEASTPT(ph)GISASCR ddPTM_HeLa_A486_30min_R1 1 EMFPYEASTPTGISASCR 18 0 G5E972;P42167;H0YJH7;P42167-2 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPYEAS(0.013)T(0.311)PT(0.676)GISASCR 171.78 1.06E-11 107740000 147850 146820 137890 30924 155850 126050 122840 121710 119350 127590 TRUE FALSE FALSE 137486.4785 135185.4485 191284.7008 71992.63481 136301.8398 110499.2326 92104.13273 93999.28991 129695.3541 95640.63353 1.437532076 1.413472951 2.000035903 0.752741091 1.425145722 1.155358643 0.96302303 0.982838428 1.356069584 1 16.54533607 -5.265298131 24.99993853 1.10132898 1.596659568 0.508950976 0.236476314 276.6654284 1792452.065 0.064703173 0.100237852 5.43E-06 5.265298131 0.495330587 EMGGHHIVALCVLK ddPTM_HeLa_A485_30min_R1 1 EMGGHHIVALCVLK 14 0 P00492 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase 0 0 61.038 0.029426 6840500 9461.7 9509.3 10585 9365.5 14433 10087 13035 13715 10207 14446 FALSE FALSE TRUE 11566.42252 10621.32992 14500.83198 9877.11355 12995.99984 10615.13972 10249.96576 10351.37475 12255.45128 10844.87806 1.066533202 0.979386754 1.337113419 0.910762988 1.198353709 0.978815959 0.945143478 0.954494342 1.130068149 1 13.40472621 -6.308960943 24.97084846 0.99532519 1.094650877 0.141648467 0.118350746 791.2849962 415789.2834 0.040039004 0.035311144 4.91E-07 6.308960943 0.099325688 EMGS(ph)LSIKDPK ddPTM_HeLa_A485_30min_R1 2 EMGSLSIKDPK 11 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 EMGS(0.999)LS(0.001)IKDPK;EMGS(0.933)LS(0.067)IKDPK ; 86.944 0.0015655 502440000 776590 396140 268050 914500 756520 415080 1079180 910820 405210 944120 TRUE FALSE FALSE 949339.7663 442465.127 367212.8495 964456.8194 681198.2125 436812.947 848604.3769 687439.9669 486531.9302 708768.2592 1.339421953 0.624273338 0.51810002 1.360750579 0.961101465 0.616298686 1.197294554 0.969907947 0.68644712 1 19.43495447 -5.293127111 0.00343393 1.829635927 0.000309416 0 0.292380765 1267722.148 993.6560186 260216.7105 269149.9688 5.09E-06 5.293127111 -1.829326511 EMGS(ph)LSIKDPK ddPTM_HeLa_A486_30min_R1 2 EMGSLSIKDPK 11 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 EMGS(0.985)LS(0.015)IKDPK;EMGS(0.992)LS(0.008)IKDPK ; 66.215 0.0042085 0 833890 1020380 469420 728140 862200 1368990 1951000 1739350 525270 1169810 TRUE FALSE FALSE 775438.6172 939521.3726 651191.9955 1695146.718 754054.8363 1200097.933 1462839.164 1343337.975 570800.8265 876881.9618 0.884313569 1.071434256 0.742622182 1.933152684 0.859927412 1.368596898 1.66822814 1.531948464 0.650943743 1 19.74202313 EMHNFEEELTCPICYSIFEDPR ddPTM_HeLa_A486_30min_R1 1 EMHNFEEELTCPICYSIFEDPR 22 0 C9IY67 C9IY67 TRIM59 0 0 66.874 0.017305 999980000 222040 275660 340470 11750 447090 186920 165630 236860 231030 75713 FALSE FALSE TRUE 206476.1426 253815.6977 472309.1021 27354.59381 391011.8033 163859.7109 124187.6221 182932.1486 251055.8664 56753.97199 3.638091492 4.472210292 8.322044881 0.48198554 6.889593618 2.887193708 2.188174991 3.223248386 4.423582308 1 15.79243374 -6.45811372 24.99186693 2.843104178 4.723242127 0.189148038 2.081866287 371.0052817 143165.0826 0.706167577 0.622780733 3.48E-07 6.45811372 1.88013795 EMISLLS(ph)PQK ddPTM_HeLa_A486_30min_R1 1 EMISLLSPQK 10 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 EMISLLS(1)PQK 134.56 5.24E-05 43782000 122650 121460 66019 45225 119330 143040 159630 141800 97106 152520 TRUE FALSE FALSE 114052.8684 111835.0673 91583.32485 105286.0855 104362.5187 125393.1791 119688.8856 109515.2355 105523.2263 114327.9993 0.997593495 0.978194913 0.801057706 0.920912517 0.912834296 1.096784514 1.046890406 0.957903892 0.922986731 1 16.80281924 -6.161601767 24.91450601 1.004926048 0.918440542 0.285110494 0.065422109 57.03677028 14223.46837 0.023222431 0.023222433 6.89E-07 6.161601767 -0.086485506 EMISLLS(ph)PQKK ddPTM_HeLa_A486_30min_R1 1 EMISLLSPQKK 11 1 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 EMISLLS(1)PQKK 114.74 0.00022447 129110000 171770 151150 79443 81634 140730 189000 211320 215170 139760 259410 TRUE FALSE FALSE 159729.81 139172.3235 110205.4572 190048.0776 123078.3311 165683.1016 158445.5009 166180.4881 151874.5093 194452.0475 0.821435475 0.715715393 0.566748762 0.977351897 0.632949525 0.852051206 0.814830715 0.854609094 0.781038365 1 17.5690549 -13.39613159 0.125539734 1.651803177 0.670124242 0.299298143 0.10835961 149.2515045 1.383982451 25.07787293 0.911636369 4.02E-14 13.39613159 -0.981678935 EMLAS(ph)DDEEDVSSK ddPTM_HeLa_A485_30min_R1 8 EMLASDDEEDVSSK 14 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK ;;;;;;; 350.76 5.39E-95 13974760000 5745820 4706820 3343707 7154760 4604320 4609880 6303530 5212980 4143160 8533810 TRUE FALSE FALSE 7023957.836 5257241.655 4580683.363 7545606.422 4145897.734 4851246.189 4956729.32 3934488.481 4974654.209 6406488.22 1.096381917 0.820612085 0.715006913 1.177806961 0.64714046 0.757239539 0.773704587 0.614141218 0.776502514 1 22.61110232 -5.805277274 24.99991053 0.742563536 0.926076743 0.254331174 0.15564514 189.8342765 108257.7995 0.046761674 0.053023053 1.57E-06 5.805277274 0.183513206 EMLAS(ph)DDEEDVSSK ddPTM_HeLa_A486_30min_R1 10 EMLASDDEEDVSSK 14 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK ;;;;;;;;; 373.06 3.45E-109 12937780000 9759520 9764920 4954521 3790118 7416140 10200970 12156940 10468260 7405670 12859730 TRUE FALSE FALSE 9075428.046 8991112.176 6873044.218 8823586.246 6485938.568 8942478.037 9115145.029 8084865.719 8047599.438 9639569.905 0.941476449 0.932729599 0.713003203 0.915350616 0.672845224 0.927684339 0.945596652 0.838716436 0.834850467 1 23.20053735 EMLAS(ph)DDEEDVSSKVEK ddPTM_HeLa_A485_30min_R1 3 EMLASDDEEDVSSKVEK 17 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK ;; 184.95 5.31E-18 2532350000 820683 609258 519853 1570120 1589560 1161190 2159120 2405050 938816 2213940 TRUE FALSE FALSE 1003241.102 680505.4233 712168.2576 1655891.68 1431297.825 1221988.113 1697806.374 1815207.717 1127227.76 1662045.503 0.603618313 0.409438503 0.428489025 0.99629744 0.86116645 0.735231443 1.021516181 1.09215284 0.678217148 1 20.66452845 -5.25822329 24.99772807 0.910992147 0.473407578 0.695888122 0.130712418 153.6597255 1194346.876 0.036001745 0.059162227 5.52E-06 5.25822329 -0.437584569 EMLAS(ph)DDEEDVSSKVEK ddPTM_HeLa_A486_30min_R1 6 EMLASDDEEDVSSKVEK 17 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK ;;;;; 185.41 5.11E-18 4643060000 3175790 2895450 1645042 2586730 4265160 4274320 6638910 6732470 2365855 5183610 TRUE FALSE FALSE 2953183.521 2666003.997 2282046.318 6022038.166 3730183.862 3746997.857 4977784.499 5199633.55 2570929.216 3885600.316 0.760032757 0.686124094 0.587308558 1.549834691 0.960001945 0.964329203 1.281085056 1.338180236 0.661655602 1 21.88970608 -5.225178273 24.97257397 1.117035828 0.678651917 0.414749649 0.233923456 554.3886268 381799.9063 0.061951781 0.10729963 5.95E-06 5.225178273 -0.438383911 EMLMEDVGS(ph)EEEQEEEDEAPFQEK ddPTM_HeLa_A485_30min_R1 2 EMLMEDVGSEEEQEEEDEAPFQEK 24 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK ; 150.48 1.62E-09 189116000 63599 66869 46368 71257 53646 65534 73966 58922 53502 86423 TRUE FALSE FALSE 77746.37814 74688.74787 63521.45273 75149.58948 48304.81588 68965.25891 58162.55985 44471.28711 64239.36065 64879.3366 1.198322643 1.151194691 0.979070627 1.158297748 0.744533135 1.062977252 0.896472789 0.685446083 0.990135905 1 15.98547145 -4.987486246 0.715104266 0.882155914 1.252117354 0.38108517 0.128041526 1.320125367 0.958590963 0.060114813 0.341144794 1.03E-05 4.987486246 0.36996144 EMLMEDVGS(ph)EEEQEEEDEAPFQEK ddPTM_HeLa_A486_30min_R1 5 EMLMEDVGSEEEQEEEDEAPFQEK 24 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK ;;;; 163.73 4.22E-14 456201000 1135689 1041453 530998 344088.4 733164 996066 927371 865937 889382 1320209 TRUE FALSE FALSE 1056083.066 958924.4714 736614.6462 801055.1845 641203.7346 873181.5042 695332.9671 668782.0484 966474.3479 989620.0733 1.06716011 0.968982438 0.74434085 0.809457292 0.647929192 0.88234013 0.702626175 0.675796769 0.976611504 1 19.91651524 -4.614885881 3.908868434 0.787196946 1.049240485 0.357958811 0.115154189 0.195946633 5.499341465 0.028171694 0.087932638 2.43E-05 4.614885881 0.262043539 EMLWGSSTQLASDGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EMLWGSSTQLASDGSPK 17 0 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 0 EMLWGSSTQLASDGS(1)PK;EMLWGSSTQLAS(0.007)DGS(0.993)PK ; 290.88 2.86E-68 206058000 95415 88108 78642 163726 120268 89031 144723 121794 84950 224578 TRUE FALSE FALSE 116639.7376 98411.46416 107734.9484 172669.9368 108293.6956 93692.52549 113801.7488 91923.83053 101998.6858 168594.8377 0.691834573 0.583715762 0.639016887 1.02417096 0.642331029 0.555725945 0.675001384 0.545235144 0.604992936 1 17.36320084 -10.05972587 4.870373728 1.000008867 0.663272676 0.379791539 0.129403555 1.32E-05 2.54E-06 0.132302331 0.032087184 8.72E-11 10.05972587 -0.336736192 EMLWGSSTQLASDGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EMLWGSSTQLASDGSPK 17 0 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 0 EMLWGSSTQLAS(0.028)DGS(0.972)PK;EMLWGSSTQLASDGS(1)PK ; 216.32 5.20E-34 232780000 147263 154333 84496 97804 133400 146432 178692 165074 105363 251129 TRUE FALSE FALSE 136940.6242 142103.091 117215.1141 227692.6547 116667.7281 128366.7087 133981.3716 127490.2537 114495.9497 188244.6638 0.727460855 0.754885095 0.622674299 1.209557021 0.619766456 0.681914196 0.711740609 0.677258261 0.608229457 1 17.52224944 EMPKKECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_A485_30min_R1 1 EMPKKECSEAMEVETSVISIDSPQK 25 2 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EMPKKECSEAMEVETSVISIDS(1)PQK 209.83 4.01E-29 174940000 172930 143340 68421 197210 204560 232500 468150 584910 179080 340160 TRUE FALSE FALSE 211397.6819 160102.3661 93732.77514 207983.0829 184193.2881 244673.3405 368125.9281 441459.9054 215019.7134 255364.3722 0.827827626 0.626956551 0.367055022 0.814456148 0.721295953 0.958134208 1.441571214 1.728745093 0.842011403 1 17.96219773 -6.480817194 2.750337361 1.310703668 0.657403063 0.524918037 0.25689624 0.200615795 3.025373797 0.103250804 0.083666622 3.31E-07 6.480817194 -0.653300604 EMPQDLRS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 EMPQDLRSPAR 11 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 EMPQDLRS(1)PAR;EMPQDLRS(1)PAR;EMPQDLRS(1)PAR;EMPQDLRS(1)PAR ;;; 86.539 0.0015931 2601500000 1755900 2018330 1862820 1381520 2562500 2172430 2463030 2634940 1876180 1862960 TRUE FALSE FALSE 2146493.897 2254356.136 2551954.636 1456988.939 2307368.503 2286175.076 1936783.519 1988716.834 2252712.117 1398558.357 1.534790369 1.611914243 1.82470372 1.041779152 1.649819252 1.634665485 1.384842834 1.421976297 1.610738733 1 20.41550902 -11.84364136 0.31836524 2.09E-11 1.550929719 0.380612764 0.199599725 73.0857184 2.286982949 49.87014029 0.18434392 1.43E-12 11.84364136 1.550929719 EMPQDLRS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 EMPQDLRSPAR 11 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 EMPQDLRS(1)PAR;EMPQDLRS(1)PAR;EMPQDLRS(1)PAR;EMPQDLRS(1)PAR ;;; 87.808 0.0015067 4062130000 3159390 3546740 2984300 776560 4313640 3453340 3468090 3777180 3058160 2771530 TRUE FALSE FALSE 2937933.076 3265683.405 4139900.882 1807870.925 3772583.048 3027302.022 2600337.2 2917198.569 3323243.771 2077520.848 1.414153354 1.571913662 1.992712076 0.870205912 1.815906228 1.457170466 1.251653962 1.404172946 1.599619938 1 20.98643152 -12.28030141 0.212398643 1.71E-15 1.564903473 0.200994401 0.289041391 105.5646463 2.027481453 47.74077426 0.617798573 5.24E-13 12.28030141 1.564903473 EMPQDLRS(ph)PART(ph)PPSEEDSAEAER ddPTM_HeLa_A485_30min_R1 2 EMPQDLRSPARTPPSEEDSAEAER 24 2 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 0 EMPQDLRS(0.979)PART(0.512)PPS(0.346)EEDS(0.163)AEAER;EMPQDLRS(1)PART(0.995)PPS(0.005)EEDSAEAER ; 169.39 1.83E-13 2133870000 917620 1418180 1471530 953830 1791970 1467080 1630350 2047200 1380480 1312610 TRUE FALSE FALSE 1121741.403 1584023.814 2015910.182 1005935.318 1613555.175 1543894.04 1282012.404 1545120.99 1657529.673 985400.4838 1.138360922 1.607492426 2.045777545 1.020839074 1.637461318 1.566768096 1.301006469 1.568013225 1.682087335 1 19.91035065 -10.02231806 4.39371763 0.999975977 1.513258158 0.231106921 0.277547007 62120458.51 100184609.2 21378.51335 0.067450621 9.50E-11 10.02231806 0.513282181 EMPQDLRS(ph)PART(ph)PPSEEDSAEAER ddPTM_HeLa_A486_30min_R1 2 EMPQDLRSPARTPPSEEDSAEAER 24 2 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 0 EMPQDLRS(0.918)PART(0.621)PPS(0.405)EEDS(0.056)AEAER;EMPQDLRS(1)PART(0.96)PPS(0.04)EEDSAEAER ; 104.24 0.0021987 1856460000 845900 1052870 1171140 440250 1786460 1089050 1183920 1351260 995260 1071510 TRUE FALSE FALSE 786606.7782 969436.7467 1624636.772 1024924.249 1562385.529 954694.0836 887690.6938 1043607.596 1081529.938 803196.9216 0.979344862 1.206972687 2.022712897 1.276055997 1.945208562 1.188617707 1.105196833 1.299317226 1.346531478 1 19.61539421 EMQPTHPIR ddPTM_HeLa_A485_30min_R1 7 EMQPTHPIR 9 0 P31946-2;P31946;E7EX29;P63104;B0AZS6;B7Z2E6;H0YB80;P63104-2;P27348 P31946-2;E7EX29;P27348 YWHAB;YWHAZ;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein theta" 0 0 ;;;;;; ;;;;;; 121.83 0.00062478 646136000 515408.5 643888 719107 539655.9 814490 673515 816896 839534 657845.4 761775 FALSE FALSE TRUE 630059.3427 719185.1005 985134.6038 569135.9353 733396.5158 708779.2039 642359.4962 633636.9702 789868.9377 571878.5119 1.101736347 1.25758371 1.722629166 0.995204267 1.282434119 1.239387718 1.12324468 1.107992269 1.381183103 1 19.12534917 EMQPTHPIR ddPTM_HeLa_A486_30min_R1 6 EMQPTHPIR 9 0 P31946-2;P31946;E7EX29;P63104;B0AZS6;B7Z2E6;H0YB80;P63104-2;P27348 P31946-2;E7EX29;P27348 YWHAB;YWHAZ;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein theta" 0 0 ;;;;; ;;;;; 141.95 0.00041585 801350600 495122.2 578178 625361.8 232636.9 920968.9 624165.3 717199.5 661005.9 601248.3 616743.8 FALSE FALSE TRUE 460416.6906 532361.0696 867518.6367 541590.46 805452.3929 547162.1313 537748.5993 510509.2862 653364.9867 462307.1382 0.995910841 1.151531148 1.876498469 1.171494912 1.742245201 1.183546794 1.163184721 1.104264339 1.413270384 1 18.81849211 -6.459325369 24.99905433 1.178078277 1.396918006 0.138419976 0.267167145 447.4080922 175989.8837 0.093925114 0.082834088 3.47E-07 6.459325369 0.218839729 EMRTERELVERR ddPTM_HeLa_A485_30min_R1 2 EMRTERELVERR 12 3 Q6ZU80;Q6ZU80-1;H0YIZ9;Q6ZU80-3 Q6ZU80 CEP128 Centrosomal protein of 128 kDa 0 0 ; ; 82.287 0.01129 229640000 364890 271370 492080 611840 810890 321560 476410 359940 500990 835800 FALSE FALSE TRUE 446058.5216 303104.3609 674120.8692 645263.2699 730154.9444 338396.3844 374621.1116 271664.1506 601534.0976 627450.4418 0.710906379 0.48307299 1.074381058 1.028389219 1.163685442 0.539319701 0.597052909 0.432965112 0.958695791 1 19.25914199 -6.290600518 24.80782448 0.663382423 0.887063927 0.115040741 0.244790717 1287.327624 1095144.806 0.090225057 0.079584104 5.12E-07 6.290600518 0.223681504 EMRTERELVERR ddPTM_HeLa_A486_30min_R1 1 EMRTERELVERR 12 3 Q6ZU80;Q6ZU80-1;H0YIZ9;Q6ZU80-3 Q6ZU80 CEP128 Centrosomal protein of 128 kDa 0 0 82.287 0.01129 226260000 167030 436450 471920 155690 686840 443680 519260 538760 390250 293590 FALSE FALSE TRUE 155322.0595 401864.1125 654660.0625 362454.1881 600690.1227 388943.2726 389335.6558 416096.109 424077.1842 220073.153 0.705774682 1.82604787 2.974738415 1.646971396 2.729502051 1.767336303 1.76911927 1.890717261 1.926982816 1 17.74762363 -9.330990048 0.701432454 0.935034938 1.97069716 0.178326995 0.582267389 17.44409225 7.223454455 3.71349938 0.213720287 4.67E-10 9.330990048 1.035662222 EMT(ph)MQELK ddPTM_HeLa_A485_30min_R1 2 EMTMQELK 8 0 E7ER08;Q9NR63-2;Q9NR63-3;Q9NR63 E7ER08 CYP26B1 Cytochrome P450 26B1 1 0 EMT(1)MQELK;EMT(1)MQELK ; 57.859 0.017073 32757000 27785 105829 167549 12870.6 102896 68484 41232 62872 100309 20301 TRUE FALSE FALSE 33965.67739 118204.781 229532.3474 13573.68829 92651.31295 72069.71634 32422.44637 47452.54342 120440.0962 15240.33431 2.2286701 7.756049083 15.06084727 0.890642424 6.079349117 4.728880277 2.127410443 3.11361565 7.902720094 1 13.89560693 -5.306165695 24.99980557 3.85738013 8.289304369 0.265465911 3.541794922 606.0103335 338728.6221 0.996786738 1.478481393 4.94E-06 5.306165695 4.431924239 EMTDATNEEETEIKEDTKVPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 EMTDATNEEETEIKEDTKVPSPK 23 2 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 EMTDAT(0.001)NEEET(0.002)EIKEDT(0.011)KVPS(0.986)PK 62.284 0.008006 120290000 135120 61808 37072 419520 99955 101540 286140 193050 73926 537030 TRUE FALSE FALSE 165176.9778 69035.90794 50786.47549 442437.3153 90003.12924 106856.4774 225003.8515 145704.1848 88762.27011 403158.3043 0.409707492 0.171237718 0.125971548 1.097428257 0.223245133 0.265048434 0.558102981 0.36140688 0.220167287 1 18.62098691 -10.98161525 2.681155504 1.548648165 0.385276122 0.323735218 0.268182288 126856313.8 62917446.04 431187113.7 0.066438174 1.04E-11 10.98161525 -1.163372044 EMTHSWPPPLTAIHT(ph)PCKTEPSKFPFPTK ddPTM_HeLa_A485_30min_R1 1 EMTHSWPPPLTAIHTPCKTEPSKFPFPTK 29 2 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 EMTHSWPPPLTAIHT(1)PCKTEPSKFPFPTK 241.23 6.43E-50 363320000 291620 215970 165580 354680 340470 345140 530050 513550 242260 437910 TRUE FALSE FALSE 356489.8629 241225.8128 226834.9324 374055.2703 306571.6113 363210.9967 416800.4874 387601.0573 290879.3599 328747.0961 1.08438939 0.733773212 0.689998284 1.137820759 0.932545458 1.104834084 1.267845381 1.179025037 0.884811952 1 18.32661863 -5.272841205 24.9606831 1.083537422 0.825825584 0.3566071 0.144753026 722.8704501 1582494.311 0.041673325 0.062432074 5.34E-06 5.272841205 -0.257711838 EMTHSWPPPLTAIHT(ph)PSTAEPSKFPFPTK ddPTM_HeLa_A485_30min_R1 2 EMTHSWPPPLTAIHTPSTAEPSKFPFPTK 29 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;H0Y9S4 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 EMTHSWPPPLTAIHT(0.832)PS(0.139)T(0.027)AEPS(0.002)KFPFPTK;EMTHSWPPPLTAIHT(0.968)PS(0.028)T(0.004)AEPSKFPFPTK ; 140.52 1.54E-06 302365000 266922 264108 214192 276426 357240 276397 353310 359960 212048 322350 TRUE FALSE FALSE 326297.878 294993.1332 293430.5341 291526.4524 321671.9313 290868.7195 277822.4322 271679.2456 254604.0886 241994.0774 1.348371338 1.219009723 1.212552543 1.204684245 1.329255388 1.201966274 1.148054676 1.122668986 1.052108759 1 17.88461221 -7.328168839 0.876338735 1.003530847 1.257910147 0.790582536 0.047383897 0.272763371 0.383809228 0.044403828 0.018467696 4.70E-08 7.328168839 0.2543793 EMTK(ac)EEK(ac)LQLRK ddPTM_HeLa_A485_30min_R1 2 EMTKEEKLQLRK 12 3 A0A087WW69;F8W8L6;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 0 2 ; EMTK(1)EEK(1)LQLRK;EMTK(1)EEK(1)LQLRK 73.848 0.023451 64624000 79762 114201 92196 34536 235090 30038 143414 74008 50804 176898 FALSE TRUE FALSE 97504.78172 127555.8135 126303.137 36422.61423 211683.6141 31610.74323 112772.4273 55857.42196 60999.8968 132800.5842 0.734219524 0.960506419 0.951073655 0.274265467 1.593996107 0.238031658 0.849186229 0.420611267 0.459334552 1 17.01890197 EMVELPLRHPALFK ddPTM_HeLa_A485_30min_R1 1 EMVELPLRHPALFK 14 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 93.478 0.0039591 123960000 135850 140070 125880 120300 170600 200240 246340 289200 132200 172210 FALSE FALSE TRUE 166069.3638 156449.9681 172448.2503 126871.6844 153614.465 210724.2568 193707.4466 218273.2466 158731.3274 129281.2163 1.284559108 1.210152353 1.333900278 0.981362088 1.188219522 1.629968087 1.498341771 1.688360094 1.22779884 1 16.98015315 -6.234093685 23.56783357 1.45750676 1.195555182 0.188519301 0.204936208 470.7247894 405692.7851 0.06493328 0.06491194 5.83E-07 6.234093685 -0.261951578 ENARS(ph)PSSVTGNALWK ddPTM_HeLa_A486_30min_R1 1 ENARSPSSVTGNALWK 16 1 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 ENARS(0.998)PS(0.001)SVTGNALWK 144.01 4.09E-08 305650000 137340 139620 115910 73693 234400 153330 189040 230740 90986 150910 TRUE FALSE FALSE 127713.1752 128556.0027 160793.4562 171561.0282 204999.3663 134413.7035 141740.1925 178205.539 98872.73974 113121.1537 1.128994631 1.136445293 1.421426947 1.516613141 1.81221071 1.188227834 1.25299458 1.575351145 0.874042886 1 16.78750921 -7.772058406 24.9952096 0.937021132 1.380823715 0.421768354 0.207009184 241.7234986 568952.7524 0.204582808 0.055030306 1.69E-08 7.772058406 0.443802583 ENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 6 ENASPAPGTTAEEAMSR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR ;;;;; 412.18 1.90E-153 8016820000 2094220 2332310 2132640 2277700 2393400 1951780 2344670 2026900 1999980 2779260 TRUE FALSE FALSE 2560072.014 2605053.366 2921592.283 2402124.984 2155104.692 2053972.183 1843712.1 1529799.597 2401357.641 2086441.63 1.227003898 1.248562782 1.400275109 1.151302269 1.03290917 0.984437884 0.883663398 0.73320987 1.150934493 1 20.99261313 -5.764677416 1.864668115 0.930383338 1.288246401 0.648770108 0.10915986 0.199514009 1.431377502 0.037947591 0.049730627 1.72E-06 5.764677416 0.357863063 ENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A486_30min_R1 8 ENASPAPGTTAEEAMSR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(1)PAPGTTAEEAMSR;ENAS(0.998)PAPGT(0.001)TAEEAMSR ;;;;;;; 315.53 3.50E-79 6935230000 2459084 2805003 1995813 669890 2484047 2483312 2487474 2452192 2314290 2557155 TRUE FALSE FALSE 2286714.91 2582724.347 2768645.243 1559537.774 2172474.662 2176946.214 1865081.695 1893881.413 2514894.521 1916826.744 1.192969014 1.347395822 1.444389929 0.813603931 1.133370384 1.135703172 0.973004838 0.988029523 1.312009303 1 20.87028851 -5.244286172 24.99953126 1.054052962 1.330166015 0.468424619 0.135400106 729.236367 1062806.661 0.036126218 0.062379549 5.70E-06 5.244286172 0.276113053 ENDEEMKAAK(ac)EK ddPTM_HeLa_A485_30min_R1 2 ENDEEMKAAKEK 12 2 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ; ENDEEMKAAK(1)EK;ENDEEMKAAK(1)EK 147.68 0.00075999 81796000 44260 41307 25491.3 73735 95506 93493 168154 225145 50921 127630 FALSE TRUE FALSE 54105.4843 46137.49433 34921.59265 77762.95634 85997.0873 98388.14891 132226.5242 169927.8357 61140.37762 95814.18986 0.564691768 0.481530913 0.364472034 0.811601668 0.897540202 1.02686407 1.380030707 1.773514299 0.638114018 1 16.54795171 -5.858807179 1.303000353 1.241786697 0.471794923 0.518021522 0.283701008 0.322799257 1.149697749 0.115646931 0.149535299 1.38E-06 5.858807179 -0.769991774 ENDEEMKAAK(ac)EK ddPTM_HeLa_A486_30min_R1 1 ENDEEMKAAKEK 12 2 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ENDEEMKAAK(1)EK 118.13 0.0051577 27079000 14528 12717 9147.4 12205 20881 18802 29961 29490 9895.9 26949 FALSE TRUE FALSE 13509.66222 11709.25861 12689.51826 28413.85681 18261.91027 16482.4004 22464.4409 22775.77076 10753.68458 20200.79499 0.668768839 0.579643455 0.628169251 1.406571218 0.904019385 0.815928304 1.112057269 1.127469031 0.532339672 1 14.30212445 -5.063969443 24.99981161 0.988052933 0.619127811 0.372353195 0.214126261 204.8990782 80075.86376 0.057057275 0.098826211 8.63E-06 5.063969443 -0.368925122 ENDTVTIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 ENDTVTISPK 10 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 ENDTVTIS(1)PK;ENDTVT(0.015)IS(0.984)PK ; 105.65 0.00095767 303200000 381800 331980 258690 535920 339450 336630 468180 391730 285950 677710 TRUE FALSE FALSE 466730.0928 370802.1732 354390.196 565195.9526 305653.1661 354255.4263 368149.5183 295657.6033 343337.5421 508769.3693 0.917370661 0.728821732 0.696563546 1.11090798 0.600769591 0.696298652 0.723607867 0.581123041 0.674839255 1 18.95665229 ENEEDLKDKLDFAPPT(ph)PPHYPPHER ddPTM_HeLa_A485_30min_R1 1 ENEEDLKDKLDFAPPTPPHYPPHER 25 2 Q86Y56-2;Q86Y56;H7C3B1;H0Y650 Q86Y56-2 DNAAF5 "Dynein assembly factor 5, axonemal" 1 0 ENEEDLKDKLDFAPPT(1)PPHYPPHER 133.42 2.50E-06 129290000 244420 138680 83941 467510 180930 181380 342610 242430 124800 574640 TRUE FALSE FALSE 298790.3858 154897.4196 114994.269 493048.8875 162915.9739 190876.7763 269408.5746 182973.6624 149846.2153 431392.8235 0.692617887 0.359063506 0.266565095 1.142923249 0.377651099 0.442466277 0.624508708 0.424146283 0.347354446 1 18.71864265 -9.915712148 4.146235758 1.000014696 0.519682762 0.262222088 0.241692054 58372849.39 129321684.6 13491.56721 0.061825301 1.21E-10 9.915712148 -0.480331935 ENES(ph)PDVR ddPTM_HeLa_A485_30min_R1 1 ENESPDVR 8 0 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ENES(1)PDVR 96.113 0.0029082 252040000 274270 221010 223510 380730 221640 163100 231660 134710 210450 433350 TRUE FALSE FALSE 335280.4153 246855.197 306195.65 401528.3158 199572.7434 171639.6638 182163.9485 101672.1613 252685.3846 325323.8202 1.030605183 0.758798408 0.941202676 1.234241979 0.613458748 0.527596361 0.559946543 0.312526028 0.776719591 1 18.31151693 -5.864668215 8.886217567 0.586203754 0.970439822 0.422354344 0.201398307 0.240306654 18.76677714 0.060879554 0.069120546 1.37E-06 5.864668215 0.384236067 ENES(ph)PDVR ddPTM_HeLa_A486_30min_R1 1 ENESPDVR 8 0 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ENES(1)PDVR 99.522 0.0021139 0 404920 508140 266110 114210 301160 455830 412530 348590 452800 522520 TRUE FALSE FALSE 376537.199 467873.1358 369154.9187 265886.6519 263385.7046 399594.3291 309310.6307 269223.6667 492049.0686 391677.591 0.961344758 1.194536391 0.942496909 0.678840603 0.672455383 1.020212385 0.789707244 0.687360403 1.256260455 1 18.57930706 -4.992013 19.91140424 0.850214701 1.075586197 0.158622841 0.182909373 24.07482133 59999.89372 0.046778212 0.096724069 1.02E-05 4.992013 0.225371496 ENES(ph)PDVRR ddPTM_HeLa_A485_30min_R1 2 ENESPDVRR 9 1 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ENES(1)PDVRR;ENES(1)PDVRR ; 126.83 0.00016458 135470000 214520 262790 190425 236280 224320 209050 269850 242420 192376 302440 TRUE FALSE FALSE 262239.2339 293521.0045 260871.1317 249187.3781 201985.9132 219995.5347 212194.343 182966.1149 230984.0986 227047.274 1.154998381 1.292774845 1.148972754 1.097513191 0.889620517 0.968941537 0.93458221 0.805850305 1.017339229 1 17.79263319 -5.488374899 2.06528744 0.926693128 1.216364829 0.750527921 0.068341727 0.143769021 1.221699289 0.020879233 0.033335493 3.25E-06 5.488374899 0.289671702 ENES(ph)PDVRR ddPTM_HeLa_A486_30min_R1 2 ENESPDVRR 9 1 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ENES(1)PDVRR;ENES(1)PDVRR ; 113.07 0.00046632 204422000 201706 208296 124887 64122 164302 185429 196053 191549 159541 253500 TRUE FALSE FALSE 187567.451 191789.8664 173246.591 149279.2565 143693.7111 162552.6553 146998.4658 147937.4742 173370.1423 190021.95 0.987083077 1.009303748 0.911718836 0.785589541 0.75619533 0.855441465 0.773586766 0.778528345 0.912369031 1 17.53580655 -4.992745174 3.525310743 0.823351948 0.996477814 0.438028862 0.071517025 0.180003696 4.797452447 0.0186778 0.040006471 1.02E-05 4.992745174 0.173125866 ENFS(ph)PER ddPTM_HeLa_A485_30min_R1 5 ENFSPER 7 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 ENFS(1)PER;ENFS(1)PER;ENFS(1)PER;ENFS(1)PER;ENFS(1)PER ;;;; 133.76 0.0016233 6372770000 3462890 4255100 4165960 3926280 5023240 3818640 4645010 4438320 4208340 4893690 TRUE FALSE FALSE 4233197.934 4752696.931 5707121.964 4140762.735 4523108.588 4018578.086 3652565.667 3349815.061 5052915.237 3673783.145 1.152272131 1.293679225 1.553472739 1.127111365 1.231185514 1.093852829 0.994224624 0.91181622 1.375398339 1 21.80883504 -5.902443422 1.601206444 1.065001321 1.316938639 0.296464003 0.155247113 0.454122816 2.399068206 0.05932343 0.071225186 1.25E-06 5.902443422 0.251937318 ENFS(ph)PER ddPTM_HeLa_A486_30min_R1 4 ENFSPER 7 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 ENFS(1)PER;ENFS(1)PER;ENFS(1)PER;ENFS(1)PER ;;; 134.59 0.00161 6216800000 3775240 4167270 3371720 1177470 4422460 4046920 4030820 4324720 3636010 3386500 TRUE FALSE FALSE 3510615.171 3837040.348 4677340.282 2741209.666 3867753.829 3547652.156 3022266.202 3340075.664 3951182.274 2538498.358 1.382949554 1.511539425 1.84256187 1.079854812 1.5236385 1.39753967 1.190572447 1.315768298 1.556503774 1 21.2755439 -12.98718972 0.130861432 2.50E-13 1.600137992 0.289908579 0.199031193 138.0613606 1.466286956 38.94162665 1.579168313 1.03E-13 12.98718972 1.600137992 ENGEEGCHQNGLALPVVEEGEVLS(ph)HSLEAEHR ddPTM_HeLa_A485_30min_R1 1 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 ENGEEGCHQNGLALPVVEEGEVLS(0.5)HS(0.5)LEAEHR 47.757 0.012865 188560000 14863 17911 16327 14299 17184 16071 17806 19964 14708 17395 TRUE FALSE FALSE 18169.22307 20005.53565 22367.03672 15080.11816 15473.10062 16912.45271 14001.60264 15067.7977 17659.76069 13058.74663 1.391345095 1.531964453 1.712801186 1.154790623 1.184884052 1.295105356 1.07220111 1.153847159 1.35233198 1 13.67272881 -5.275949827 24.83349945 1.181063253 1.544029664 0.674062145 0.118474055 406.3592125 695451.2529 0.032859712 0.048987621 5.30E-06 5.275949827 0.362966412 ENGEEGCHQNGLALPVVEEGEVLS(ph)HSLEAEHR ddPTM_HeLa_A486_30min_R1 2 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 ENGEEGCHQNGLALPVVEEGEVLS(0.56)HS(0.44)LEAEHR;ENGEEGCHQNGLALPVVEEGEVLS(0.925)HS(0.075)LEAEHR ; 266.94 2.86E-64 407580000 132484 153131 109616 53857 158595 138533 151832 152584 118439 152042 TRUE FALSE FALSE 123197.5557 140996.3419 152062.2508 125381.8178 138702.5363 121442.207 113842.0277 117843.9541 128705.3879 113969.6936 1.080967684 1.237138905 1.334234094 1.100132973 1.217012452 1.065565793 0.998879826 1.033993778 1.129294849 1 16.79829071 -6.322745093 4.746931299 1.042393689 1.199083909 0.499119237 0.074383419 0.187914725 8.7107844 0.027033606 0.023988824 4.76E-07 6.322745093 0.15669022 ENGEEGCHQNGLALPVVEEGEVLSHS(ph)LEAEHR ddPTM_HeLa_A485_30min_R1 3 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 ENGEEGCHQNGLALPVVEEGEVLS(0.168)HS(0.832)LEAEHR;ENGEEGCHQNGLALPVVEEGEVLS(0.002)HS(0.998)LEAEHR;ENGEEGCHQNGLALPVVEEGEVLS(0.007)HS(0.993)LEAEHR ;; 402.68 1.94E-218 414085000 121311 148489 150758 147556 189497 148188 191807 198700 149383 172155 TRUE FALSE FALSE 148296.2134 165853.4969 206529.6578 155616.6106 170630.0133 155946.8945 150825.8675 149968.5135 179362.7979 129239.9268 1.147448912 1.283299217 1.598032922 1.20409083 1.320257737 1.206646417 1.16702223 1.160388412 1.387828068 1 16.97969231 -6.181759753 1.860912209 1.189869635 1.327593518 0.16134319 0.141287549 0.686911684 4.695426726 0.056859295 0.055036655 6.58E-07 6.181759753 0.137723883 ENGEEGCHQNGLALPVVEEGEVLSHS(ph)LEAEHR ddPTM_HeLa_A486_30min_R1 1 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 ENGEEGCHQNGLALPVVEEGEVLS(0.409)HS(0.591)LEAEHR 98.139 0.00012156 51002000 18283 23328 17726 5051.1 18974 22928 25116 25137 20217 25831 TRUE FALSE FALSE 17001.45611 21479.40432 24589.98192 11759.21607 16594.10399 20099.37647 18831.71115 19413.85384 21969.42584 19362.74947 0.878049687 1.109315821 1.269963337 0.607311275 0.85701176 1.038043513 0.97257423 1.002639314 1.134623256 1 14.24099621 -7.555088263 7.323700807 1.06865853 0.96609729 0.059601452 0.165987278 0.688450135 118.392589 0.117676249 0.044537957 2.79E-08 7.555088263 -0.102561239 ENGSGHEASLQLRPPPEPST(ph)PVSGQDDLIQHQDMR ddPTM_HeLa_A485_30min_R1 3 ENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMR 35 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ENGSGHEASLQLRPPPEPS(0.045)T(0.952)PVS(0.003)GQDDLIQHQDMR;ENGSGHEASLQLRPPPEPS(0.174)T(0.826)PVSGQDDLIQHQDMR;ENGSGHEAS(0.004)LQLRPPPEPS(0.243)T(0.709)PVS(0.044)GQDDLIQHQDMR ;; 153.54 4.83E-09 2205060000 162786 199561 184581 185054 239711 194085 262530 234850 147826 242922 TRUE FALSE FALSE 198997.1841 222897.923 252865.193 195163.0314 215844.5312 204246.9905 206438.3208 177252.6693 177493.3223 182366.016 1.091196641 1.222255812 1.386580671 1.07017215 1.183578694 1.119983838 1.131999949 0.971961076 0.973280692 1 17.47647738 -6.927147141 0.976282527 0.965668404 1.205253978 0.524939104 0.083459277 0.448848018 0.808055205 0.068409742 0.034176125 1.18E-07 6.927147141 0.239585574 ENGSGHEASLQLRPPPEPST(ph)PVSGQDDLIQHQDMR ddPTM_HeLa_A486_30min_R1 2 ENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMR 35 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ENGSGHEASLQLRPPPEPS(0.033)T(0.967)PVSGQDDLIQHQDMR;ENGSGHEASLQLRPPPEPS(0.034)T(0.965)PVS(0.001)GQDDLIQHQDMR ; 228.94 4.51E-39 1190250000 327790 317340 287740 25325 369010 241560 332470 285620 285340 175505 TRUE FALSE FALSE 304813.6137 292192.8227 399160.6339 58957.87985 322725.3249 211758.7832 249282.4895 220590.561 310073.5009 131557.4057 2.31696279 2.221029073 3.034117555 0.448153257 2.453114086 1.609630276 1.894857141 1.676762779 2.356944479 1 17.00533294 -1.000000054 0.052769057 6.80E-10 5.567602056 0.173482515 0.651148835 847.6536002 3.374881215 80.48565842 377.3918856 0.099999988 1.000000054 5.567602055 ENIKPNETS(ph)PSFSK ddPTM_HeLa_A485_30min_R1 2 ENIKPNETSPSFSK 14 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 ENIKPNET(0.017)S(0.979)PS(0.004)FSK;ENIKPNET(0.325)S(0.567)PS(0.105)FS(0.003)K ; 136.04 4.73E-06 867470000 1634210 903710 758080 2732050 1449630 1149610 1799630 1260090 1298110 3490900 TRUE FALSE FALSE 1997734.377 1009391.023 1038525.338 2881294.974 1305299.747 1209801.802 1415124.349 951050.9518 1558628.77 2620682.875 0.762295353 0.385163361 0.396280431 1.099444347 0.498076192 0.461636092 0.539983056 0.36290196 0.594741464 1 21.32151136 -10.24017078 2.575136504 1.004850397 0.560148536 0.275520089 0.210533381 1721750.155 1941424.838 66118.64306 0.055434354 5.75E-11 10.24017078 -0.44470186 ENIKPNETS(ph)PSFSK ddPTM_HeLa_A486_30min_R1 1 ENIKPNETSPSFSK 14 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 ENIKPNET(0.082)S(0.917)PS(0.001)FSK 120.92 3.46E-05 497430000 896790 1008500 410870 456890 671380 1232600 1399500 1236200 858540 1332400 TRUE FALSE FALSE 833929.652 928582.7871 569969.8675 1063663.01 587169.26 1080534.344 1049330.298 954744.2461 932958.9385 998758.3675 0.834966373 0.929737179 0.57067844 1.06498533 0.587899215 1.081877639 1.0506348 0.955931161 0.934118771 1 19.92977616 -6.292960961 24.9993662 1.004640824 0.807233278 0.3455627 0.142030501 793.3149133 629165.5521 0.047211619 0.041640391 5.09E-07 6.292960961 -0.197407546 ENKDRLS(ph)DSTTGADSLLDISSEADQQDLLSLLQAK ddPTM_HeLa_A485_30min_R1 1 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK 35 2 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 ENKDRLS(0.603)DS(0.111)T(0.111)T(0.111)GADS(0.021)LLDIS(0.021)S(0.021)EADQQDLLSLLQAK 93.776 3.78E-05 53797000 17827 20442 14932 25316 36545 34396 58139 65935 27569 42763 TRUE FALSE FALSE 21792.55465 22832.51408 20455.96817 26698.94898 32906.45148 36196.92137 45717.1277 49764.33787 33101.84542 32102.97109 0.678832952 0.711227444 0.637198598 0.831665982 1.025028225 1.127525588 1.424077777 1.550147422 1.0311147 1 14.9704192 -5.93218166 1.460838488 1.287443357 0.677127553 0.698181974 0.159871584 0.207637266 0.915797234 0.063831168 0.075645324 1.17E-06 5.93218166 -0.610315804 ENKDRLS(ph)DSTTGADSLLDISSEADQQDLLSLLQAK ddPTM_HeLa_A486_30min_R1 1 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAK 35 2 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 ENKDRLS(0.516)DS(0.145)T(0.145)T(0.145)GADS(0.043)LLDIS(0.003)S(0.003)EADQQDLLSLLQAK 51.566 0.0096383 86269000 30662 23149 12725 18113 29625 28748 42152 41223 19152 41953 TRUE FALSE FALSE 28512.75214 21314.58893 17652.46079 42167.97938 25909.15626 25201.36405 31605.12376 31837.42279 20812.11078 31447.69573 0.906672221 0.677779037 0.561327639 1.340892501 0.823880913 0.801373947 1.005006028 1.012392865 0.661800819 1 14.94066669 ENLELNGS(ph)ILSGGYPGSAPLQR ddPTM_HeLa_A486_30min_R1 1 ENLELNGSILSGGYPGSAPLQR 22 0 O43663-2;O43663-4;O43663;G3V3N7 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 ENLELNGS(0.999)ILS(0.001)GGYPGSAPLQR 230.77 1.65E-36 51933000 13312 18279 16396 8777.3 20192 19351 18024 21043 15990 16490 TRUE FALSE FALSE 12378.89754 16830.50547 22744.9703 20433.99798 17659.33108 16963.67037 13514.20456 16251.96827 17376.02607 12360.79667 1.001464378 1.361603618 1.840089349 1.653129529 1.428656384 1.372376783 1.093311776 1.314799418 1.405736745 1 13.59348411 -6.4589383 3.191114163 1.22938786 1.483405163 0.206420858 0.227646129 0.451058133 9.040909173 0.094657016 0.078625838 3.48E-07 6.4589383 0.254017303 ENLELNGSILS(ph)GGYPGSAPLQR ddPTM_HeLa_A485_30min_R1 1 ENLELNGSILSGGYPGSAPLQR 22 0 O43663-2;O43663-4;O43663;G3V3N7 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 ENLELNGS(0.122)ILS(0.878)GGYPGSAPLQR 115.42 8.45E-05 42945000 29236 23497 21978 30617 36938 25384 32120 26795 26572 36769 TRUE FALSE FALSE 35739.44734 26244.76975 30108.57678 32289.52918 33260.32302 26713.06699 25257.2996 20223.48424 31904.75667 27603.16498 1.294759038 0.950788425 1.090765381 1.169776336 1.204945992 0.96775377 0.915014623 0.732650921 1.155836901 1 14.75254608 -6.391219022 5.293614535 0.930431242 1.129596488 0.344409624 0.127800156 0.258635232 10.07053653 0.044942311 0.039331283 4.06E-07 6.391219022 0.199165246 ENLLLSDS(ph)PSCR ddPTM_HeLa_A485_30min_R1 2 ENLLLSDSPSCR 12 0 E9PF63;O75116;D6REE7 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 ENLLLSDS(1)PSCR;ENLLLSDS(1)PSCR ; 323.16 3.71E-61 281940000 240510 307320 308470 262260 399840 283930 342100 343650 292290 363210 TRUE FALSE FALSE 294010.6198 343258.4007 422585.8895 276586.5997 360030.5257 298796.1358 269007.5403 259369.2987 350949.922 272668.4314 1.078271578 1.258885742 1.54981597 1.014369718 1.320396805 1.095822257 0.986573836 0.95122599 1.287094073 1 18.05678815 -6.40425377 5.170783764 1.050784516 1.248649922 0.24491909 0.158938657 0.327443981 12.56370254 0.056825955 0.04962528 3.94E-07 6.40425377 0.197865406 ENLLLSDS(ph)PSCR ddPTM_HeLa_A486_30min_R1 2 ENLLLSDSPSCR 12 0 E9PF63;O75116;D6REE7 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 ENLLLSDS(1)PSCR;ENLLLSDS(0.999)PSCR ; 235.71 1.23E-27 246450000 288600 426800 391140 143404 486640 383010 418660 432190 318210 363440 TRUE FALSE FALSE 268370.6303 392978.8136 542599.8831 333851.7592 425601.0735 335758.1204 313906.8399 333789.7716 345792.699 272432.2584 0.985091237 1.442482678 1.991687351 1.225448709 1.56222716 1.232446269 1.152238144 1.225221175 1.269279567 1 18.05553802 -6.386222768 5.262140474 1.18222662 1.459249758 0.222106493 0.24858964 0.375390879 14.57031141 0.090749825 0.079451214 4.11E-07 6.386222768 0.277023137 ENLSAK(ac)R ddPTM_HeLa_A485_30min_R1 1 ENLSAKR 7 1 U3KQ93;Q9UBT2-2;Q9UBT2 U3KQ93 UBA2 SUMO-activating enzyme subunit 2 0 1 ENLSAK(1)R 109.71 0.030006 24436000 12042 17094 14529 14683 16213 13776 18400 19380 17439 20127 FALSE TRUE FALSE 14720.70136 19092.9946 19903.8817 15485.09511 14598.77679 14497.29006 14468.68969 14627.02461 20938.84734 15109.70931 0.974254438 1.263624217 1.317290842 1.024844012 0.966185152 0.959468495 0.957575648 0.968054667 1.385787569 1 13.88318828 -5.296340366 23.51129838 1.026542877 1.192913262 0.172741673 0.146412106 451.9196586 304437.6772 0.04153441 0.061610014 5.05E-06 5.296340366 0.166370384 ENNPPGT(ph)S(ph)LLT(ph)LR ddPTM_HeLa_A486_30min_R1 1 ENNPPGTSLLTLR 13 0 Q96JQ0 Q96JQ0 DCHS1 Protocadherin-16 3 0 ENNPPGT(1)S(1)LLT(1)LR 41.401 0.026796 219890000 156470 156630 165080 2262.1 193440 105330 115840 109460 127650 44541 TRUE FALSE FALSE 145502.261 144218.0684 229003.397 5266.28312 169176.9514 92335.45552 86855.60677 84538.3475 138714.8048 33387.64369 4.357967348 4.319504237 6.858926588 0.1577315 5.067052741 2.765557713 2.601429666 2.53202497 4.154674888 1 15.02702666 -1 0.091245537 9.62E-12 13.68927887 0.242596419 1.631379449 222.4110186 1.459838252 28.15321184 381.0098009 0.1 1 13.68927887 ENPEDVLS(ph)PTSVATYLSSK ddPTM_HeLa_A485_30min_R1 3 ENPEDVLSPTSVATYLSSK 19 0 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 ENPEDVLS(0.936)PT(0.025)S(0.039)VATYLSSK;ENPEDVLS(0.985)PT(0.011)S(0.003)VATYLSSK;ENPEDVLS(0.611)PT(0.31)S(0.079)VATYLSSK ;; 171 4.67E-16 47500000 120377 113266 90673 134949 144046 123070 147531 139652 98921 172715 TRUE FALSE FALSE 147154.4484 126511.4734 124216.7159 142320.9222 129704.2745 129513.7549 116009.7966 105402.128 118773.5373 129660.3291 1.134922681 0.975714579 0.958016355 1.097644308 1.000338927 0.998869553 0.894720825 0.812909614 0.916036063 1 16.98437761 -6.690776308 3.376631915 0.88891883 1.027403952 0.446612281 0.066028854 0.208592927 4.765283601 0.027284194 0.019791816 2.04E-07 6.690776308 0.138485122 ENPEDVLS(ph)PTSVATYLSSK ddPTM_HeLa_A486_30min_R1 2 ENPEDVLSPTSVATYLSSK 19 0 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 ENPEDVLS(0.888)PT(0.096)S(0.016)VATYLSSK;ENPEDVLS(0.967)PT(0.014)S(0.02)VATYLSSK ; 128.14 4.61E-06 81292000 195588 194597 124102 74605 206982 214988 230478 232612 163531 253255 TRUE FALSE FALSE 181878.2912 179176.425 172157.618 173684.2103 181020.3875 188464.9664 172809.9667 179651.3255 177705.9987 189838.2996 0.958069534 0.943837073 0.906864518 0.914906058 0.953550405 0.992765774 0.910300856 0.946338678 0.936091395 1 17.53441156 -5.789324029 23.94535751 0.953327352 0.9301238 0.164281226 0.027699398 280.5169024 240885.9283 0.008758647 0.009934049 1.62E-06 5.789324029 -0.023203553 ENPEES(ph)DTETQDHSR ddPTM_HeLa_A485_30min_R1 2 ENPEESDTETQDHSR 15 0 Q9H0X9-3;Q9H0X9-2;Q9H0X9 Q9H0X9-3 OSBPL5 Oxysterol-binding protein-related protein 5 1 0 ENPEES(0.999)DT(0.001)ETQDHSR;ENPEES(1)DTETQDHSR ; 242.22 2.19E-41 409510000 231630 294520 270350 191005 245280 317180 252010 311530 274490 279270 TRUE FALSE FALSE 283155.2944 328961.552 370363.7152 201439.1195 220859.062 333787.0543 198166.0048 235126.779 329577.6252 209653.1286 1.350589406 1.56907533 1.766554679 0.960820956 1.053449874 1.592091931 0.945208908 1.121503794 1.572013866 1 17.67764483 -5.259530494 24.99176603 1.185313439 1.562773352 0.353808501 0.237790334 194.4965231 2546396.547 0.065504214 0.106429873 5.50E-06 5.259530494 0.377459913 ENPEES(ph)DTETQDHSR ddPTM_HeLa_A486_30min_R1 1 ENPEESDTETQDHSR 15 0 Q9H0X9-3;Q9H0X9-2;Q9H0X9 Q9H0X9-3 OSBPL5 Oxysterol-binding protein-related protein 5 1 0 ENPEES(1)DTETQDHSR 161.08 5.27E-12 162140000 114020 111060 121970 16819 121930 131940 94606 91925 130260 105900 TRUE FALSE FALSE 106027.7868 102259.2011 169200.0505 39155.48199 106636.4024 115662.5843 70934.57816 70995.68421 141551.0417 79381.95071 1.335666179 1.288192092 2.131467531 0.493254218 1.343333107 1.457038826 0.893585727 0.8943555 1.783164062 1 16.27652339 -5.256197866 24.99656033 1.132604485 1.555416876 0.221114541 0.395559267 735.865811 3509302.019 0.106624625 0.177844654 5.54E-06 5.256197866 0.422812392 ENPPGPPIAASAPGPS(ph)QSLGLNVHNMTPAT(ph)SPIGASGVAHR ddPTM_HeLa_A486_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 2 0 ENPPGPPIAAS(0.001)APGPS(0.333)QS(0.333)LGLNVHNMT(0.333)PAT(0.333)S(0.333)PIGAS(0.333)GVAHR 46.449 0.015792 203580000 10581 12106 10580 2169.4 15420 11290 15495 12031 12925 8634.6 TRUE FALSE FALSE 9839.32654 11146.67647 14676.85934 5050.472835 13485.87981 9897.154588 11617.98711 9291.803935 14045.34941 6472.439958 1.520188152 1.722175338 2.267592969 0.780304316 2.083585155 1.529122657 1.794993416 1.435595231 2.170023901 1 12.66009396 -10.23888382 4.398979676 0.999702144 1.691885661 0.208093211 0.409593629 261086975.4 446.3802601 820813.811 0.092156982 5.77E-11 10.23888382 0.692183517 ENPPGPPIAASAPGPSQS(ph)LGLNVHNMTPATSPIGAS(ph)GVAHR ddPTM_HeLa_A486_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 2 0 ENPPGPPIAASAPGPS(0.083)QS(0.43)LGLNVHNMT(0.43)PAT(0.315)S(0.271)PIGAS(0.471)GVAHR 110.32 7.72E-07 515510000 5274.3 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 4904.598807 0 0 0 0 0 0 0 0 0 0 ENPPGPPIAASAPGPSQSLGLNVHNMT(ph)PATSPIGAS(ph)GVAHR ddPTM_HeLa_A485_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 2 0 ENPPGPPIAAS(0.002)APGPS(0.164)QS(0.164)LGLNVHNMT(0.397)PAT(0.397)S(0.397)PIGAS(0.477)GVAHR 40.935 0.027822 453900000 19941 27887 23015 16415 45224 27656 35439 38434 30766 37322 TRUE FALSE FALSE 24376.80665 31148.14207 31529.20623 17311.70989 40721.33977 29104.0254 27867.16814 29008.00124 36940.454 28018.31226 0.870031229 1.111706579 1.125307118 0.617871259 1.453383037 1.038750126 0.994605524 1.035322933 1.318439657 1 14.77408243 -5.76473812 24.99990857 1.129509047 0.957983063 0.215743547 0.191757391 166.8243932 1264301.512 0.058415276 0.069002908 1.72E-06 5.76473812 -0.171525984 ENPPGPPIAASAPGPSQSLGLNVHNMT(ph)PATSPIGASGVAHR ddPTM_HeLa_A485_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 ENPPGPPIAASAPGPSQSLGLNVHNMT(0.319)PAT(0.25)S(0.186)PIGAS(0.245)GVAHR 160.8 3.33E-15 697910000 79838 152630 168600 57462 179790 107630 128580 138650 131380 111730 TRUE FALSE FALSE 97597.68766 170478.7508 230972.156 60601.00356 161889.4763 113265.3404 101107.8326 104645.8701 157746.7609 83877.76724 1.163570406 2.032466486 2.75367554 0.722491854 1.930064207 1.350361891 1.205418741 1.247599615 1.880674297 1 16.35600084 -5.268426496 24.98044301 1.364303211 1.988160381 0.264998475 0.493796241 741.5418442 2651170.672 0.136342802 0.207212789 5.39E-06 5.268426496 0.62385717 ENPPGPPIAASAPGPSQSLGLNVHNMT(ph)PATSPIGASGVAHR ddPTM_HeLa_A486_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 ENPPGPPIAASAPGPS(0.003)QS(0.014)LGLNVHNMT(0.355)PAT(0.283)S(0.283)PIGAS(0.063)GVAHR 122.91 2.27E-07 741290000 144610 137670 130190 5467.7 155140 117000 117680 120750 135730 75336 TRUE FALSE FALSE 134473.5858 126760.5278 180603.0546 12729.08192 135680.8946 102565.7296 88235.21931 93257.86095 147495.1857 56471.37524 2.381269894 2.244686397 3.198134521 0.225407684 2.402649023 1.816242815 1.5624769 1.651418273 2.611857513 1 15.78523215 -5.205880114 24.99993748 1.67678021 2.571695329 0.31201627 0.673391255 392.5751182 176645.7026 0.175163669 0.303392191 6.22E-06 5.205880114 0.894915119 ENPPGPPIAASAPGPSQSLGLNVHNMTPAT(ph)SPIGASGVAHR ddPTM_HeLa_A485_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 ENPPGPPIAASAPGPS(0.002)QS(0.009)LGLNVHNMT(0.127)PAT(0.424)S(0.424)PIGAS(0.015)GVAHR 156.57 3.94E-11 1063500000 78756 121560 135810 53930 134200 77830 98231 111500 110830 84965 TRUE FALSE FALSE 96275.0005 135775.3846 186051.7705 56876.05934 120838.5768 81905.05845 77243.14438 84154.45017 133072.5644 63784.78916 1.509372403 2.128648324 2.916867375 0.891686875 1.894473249 1.28408449 1.210996311 1.319349821 2.086274269 1 15.9609248 -5.27172579 24.99633784 1.407062476 2.179331296 0.380630023 0.467636887 724.5454409 1760669.303 0.129546292 0.194600383 5.35E-06 5.27172579 0.77226882 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGAS(ph)GVAHR ddPTM_HeLa_A486_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 ENPPGPPIAASAPGPS(0.135)QS(0.135)LGLNVHNMT(0.135)PAT(0.172)S(0.172)PIGAS(0.25)GVAHR 73.337 0.00081525 424520000 20753 27060 25500 962.42 32461 20336 19568 23475 24280 16401 TRUE FALSE FALSE 19298.32187 24915.66705 35374.28291 2240.562398 28389.43869 17827.15108 14671.87943 18130.25496 26384.60995 12294.08285 1.569724404 2.026638942 2.877342161 0.182247218 2.30919533 1.450059456 1.193409839 1.474713908 2.146122674 1 13.58567649 -5.226880883 24.98763613 1.4456084 2.144775171 0.232847676 0.630628117 980.8491072 709205.0256 0.165126115 0.285990174 5.93E-06 5.226880883 0.699166771 ENPPVEDS(ph)SDEDDKR ddPTM_HeLa_A485_30min_R1 2 ENPPVEDSSDEDDKR 15 1 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 ENPPVEDS(0.948)S(0.052)DEDDKR;ENPPVEDS(0.931)S(0.069)DEDDKR ; 218.72 9.76E-34 722030000 657160 429020 317363 1023710 414960 370550 638740 564740 389780 1889040 TRUE FALSE FALSE 803342.9748 479190.157 434768.7803 1079632.685 373645.1254 389951.425 502267.981 426236.6295 468005.2707 1418137.093 0.566477655 0.337901152 0.306577398 0.761303467 0.263476026 0.27497442 0.354174489 0.300560948 0.330014124 1 20.43556558 -10.26656649 4.048914286 1.000659113 0.384863145 0.603742542 0.148624583 412672692.3 595821952.5 3199828.602 0.037435311 5.41E-11 10.26656649 -0.615795968 ENPPVEDS(ph)SDEDDKR ddPTM_HeLa_A486_30min_R1 1 ENPPVEDSSDEDDKR 15 1 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 ENPPVEDS(0.932)S(0.068)DEDDKR 147.41 4.09E-08 531000000 398610 402370 229030 223320 360690 467750 556550 431070 424520 726810 TRUE FALSE FALSE 370669.4974 370484.7358 317716.5496 519900.246 315448.8969 410043.7607 417295.3034 332924.7712 461317.7354 544812.0453 0.680362155 0.680023026 0.583167264 0.954274507 0.579004997 0.752633434 0.765943608 0.611081884 0.846746579 1 19.05539907 -13.99999999 0.227599431 2.535773658 0.680808457 0.393426677 0.110073342 161.3948988 1.61616157 113.7497651 0.187620762 1.00E-14 13.99999999 -1.854965201 ENPPVEDS(ph)SDEDDKRNQGNLYDK ddPTM_HeLa_A485_30min_R1 1 ENPPVEDSSDEDDKRNQGNLYDK 23 2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 ENPPVEDS(0.998)S(0.002)DEDDKRNQGNLYDK 327.42 9.57E-123 771400000 559710 364490 156720 695690 295280 430340 670140 1036100 292160 1810800 TRUE FALSE FALSE 684215.5585 407113.9349 214697.2497 733693.7831 265880.8864 452871.937 526959.1145 781994.8505 350793.8321 1359400.885 0.503321401 0.29948041 0.157935199 0.539718483 0.195586813 0.333140828 0.387640703 0.575249626 0.258050319 1 20.37453954 -13.99997745 0.312952645 6.805434223 0.330839172 0.664159632 0.135897713 175.016748 1.580192396 670.2481133 0.123077695 1.00E-14 13.99997745 -6.474595052 ENPPVEDSS(ph)DEDDKRNQGNLYDK ddPTM_HeLa_A485_30min_R1 1 ENPPVEDSSDEDDKRNQGNLYDK 23 2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 ENPPVEDS(0.158)S(0.842)DEDDKRNQGNLYDK 145.67 1.39E-09 124740000 80845 47134 20245 91466 40969 57459 90416 145970 43853 268380 TRUE FALSE FALSE 98828.69134 52645.91129 27734.46796 96462.55598 36889.98251 60467.46439 71097.88297 110170.6286 52653.89486 201477.8052 0.490518999 0.261298813 0.137655202 0.478775098 0.183097004 0.30011973 0.352881961 0.54681273 0.261338438 1 17.62026139 -11.4438731 0.343785873 1.995918372 0.298157968 0.707773734 0.128206338 28.69675713 1.187432906 21.5688986 0.101589706 3.60E-12 11.4438731 -1.697760405 ENPVLDVVS(ph)NPEQTAGEER ddPTM_HeLa_A485_30min_R1 1 ENPVLDVVSNPEQTAGEER 19 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ENPVLDVVS(0.948)NPEQT(0.052)AGEER 84.166 0.00042131 0 17268 18939 20367 21848 26290 19044 17367 14168 21219 26835 TRUE FALSE FALSE 21109.20703 21153.7513 27901.60084 23041.50092 23672.47529 20041.11439 13656.39857 10693.27579 25477.45867 20145.52836 1.04783586 1.050046984 1.385002187 1.143752624 1.175073439 0.994817015 0.677887337 0.530801456 1.264670661 1 14.29817202 -6.488407809 4.077371278 0.828314056 1.162893338 0.308914494 0.20210245 0.240669113 8.793858821 0.076331506 0.063360904 3.25E-07 6.488407809 0.334579282 ENQEPLRS(ph)PEVGDEEALRPLTK ddPTM_HeLa_A485_30min_R1 7 ENQEPLRSPEVGDEEALRPLTK 22 2 P48681 P48681 NES Nestin 1 0 ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK ;;;;;; 193.61 1.87E-20 10015450000 3754096 4245738 3389968 4503453 3959468 4273381 5354581 5043768 3579742 5496819 TRUE FALSE FALSE 4589181.704 4742240.126 4644058.232 4749465.234 3565249.463 4497128.621 4210531.026 3806775.99 4298163.384 4126563.185 1.11210746 1.149198477 1.125405822 1.150949355 0.863975493 1.089800015 1.020348129 0.922505198 1.04158429 1 21.9765093 -5.724395754 24.99999981 0.992364527 1.134827831 0.5879523 0.059323829 119.1324156 80399.52556 0.016891626 0.021806419 1.89E-06 5.724395754 0.142463304 ENQEPLRS(ph)PEVGDEEALRPLTK ddPTM_HeLa_A486_30min_R1 4 ENQEPLRSPEVGDEEALRPLTK 22 2 P48681 P48681 NES Nestin 1 0 ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(0.999)PEVGDEEALRPLT(0.001)K;ENQEPLRS(1)PEVGDEEALRPLTK;ENQEPLRS(1)PEVGDEEALRPLTK ;;; 212.71 7.13E-28 8330180000 2744522 2649085 1488116 790782 2342140 2572455 2690010 2686760 2311802 3232671 TRUE FALSE FALSE 2552145.181 2439161.857 2064354.368 1840980.46 2048366.962 2255091.657 2016941.046 2075043.4 2512190.859 2423189.14 1.053217488 1.006591609 0.851916317 0.759734529 0.845318645 0.930629648 0.83234982 0.856327459 1.036729167 1 21.20847559 -10.07186813 16.74330743 1 0.900038578 0.075519607 0.092695813 0 0 0.095536807 0.023171079 8.47E-11 10.07186813 -0.099961422 ENQPENSQT(ph)PTKK ddPTM_HeLa_A485_30min_R1 8 ENQPENSQTPTKK 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 ENQPENSQT(0.709)PT(0.291)KK;ENQPENSQT(0.999)PT(0.001)KK;ENQPENSQT(0.99)PT(0.01)KK;ENQPENSQT(0.999)PTKK;ENQPENSQT(0.998)PT(0.002)KK;ENQPENSQT(0.993)PT(0.007)KK;ENQPENS(0.002)QT(0.996)PT(0.002)KK;ENQPENS(0.003)QT(0.996)PT(0.001)KK ;;;;;;; 188.27 2.09E-17 21030280000 5048870 3602968 2236250 7110350 5079330 5051470 8317210 7604390 3671750 9507940 TRUE FALSE FALSE 6171973.713 4024303.766 3063531.933 7498770.416 4573614.071 5315957.158 6540170.138 5739401.429 4408636.546 7137785.539 0.864690271 0.563802841 0.429199213 1.050573791 0.640760926 0.744762802 0.916274397 0.804087122 0.617647661 1 22.76704512 -5.251106382 24.99805866 0.809508561 0.613688007 0.240570958 0.165780875 1080.687786 2614444.724 0.044267149 0.075601478 5.61E-06 5.251106382 -0.195820554 ENQPENSQT(ph)PTKK ddPTM_HeLa_A486_30min_R1 9 ENQPENSQTPTKK 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 ENQPENSQT(0.999)PTKK;ENQPENS(0.008)QT(0.992)PT(0.001)KK;ENQPENSQT(1)PTKK;ENQPENSQT(0.988)PT(0.011)KK;ENQPENS(0.013)QT(0.963)PT(0.025)KK;ENQPENSQT(0.997)PT(0.003)KK;ENQPENSQT(0.999)PTKK;ENQPENS(0.002)QT(0.998)PT(0.001)KK;ENQPENS(0.001)QT(0.999)PTKK ;;;;;;;; 166.3 6.82E-12 21263970000 7402750 6345170 2723848 4077112 5798533 8257150 10864570 9811400 5154652 11045460 TRUE FALSE FALSE 6883855.453 5842355.62 3778594.893 9491722.782 5071226.922 7238466.786 8146139.672 7577558.401 5601461.386 8279604.922 0.83142318 0.705632174 0.456373816 1.146398031 0.612496245 0.874252679 0.983880239 0.915207727 0.676537279 1 22.9811305 -5.251306603 24.99172738 0.875506401 0.668592001 0.266196498 0.168490128 1018.849651 2512910.577 0.044772834 0.076413296 5.61E-06 5.251306603 -0.2069144 ENQRS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 ENQRSPVR 8 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ENQRS(1)PVR;ENQRS(1)PVR ; 75.695 0.0060445 1632250000 1570810 1345970 750690 2010410 629130 1825760 1023230 1323200 1474590 1916930 TRUE FALSE FALSE 1920231.265 1503369.483 1028401.47 2120233.608 566491.6082 1921353.97 804608.5515 998683.1253 1770526.687 1439074.629 1.334351413 1.044677915 0.71462692 1.47333124 0.393649917 1.335131571 0.559115236 0.69397591 1.23032305 1 20.45670998 -4.351668159 3.434181287 0.914488412 1.352203477 0.121672501 0.329412224 0.508736856 9.796725796 0.078308106 0.492534437 4.45E-05 4.351668159 0.437715065 ENQRS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 ENQRSPVR 8 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ENQRS(1)PVR;ENQRS(1)PVR ; 73.848 0.0067286 682330000 504170 266773 642020 206783 290774 1087700 356090 355320 799560 636960 TRUE FALSE FALSE 468830.2865 245632.9359 890627.3379 481401.2742 254302.4136 953510.6329 266992.5157 274421.3926 868866.5046 477461.0701 0.981923587 0.514456468 1.865340221 1.008252409 0.532613923 1.997043723 0.55919222 0.574751346 1.819764079 1 18.86502358 ENQSEGKGSDS(ph)DSEGDNPEK ddPTM_HeLa_A485_30min_R1 1 ENQSEGKGSDSDSEGDNPEK 20 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 ENQSEGKGS(0.119)DS(0.856)DS(0.025)EGDNPEK 112.42 1.11E-05 431260000 330880 254310 157680 586810 361290 322650 527850 407470 227800 730370 TRUE FALSE FALSE 404483.1145 284049.3423 216012.3936 618865.9444 325318.699 339543.4551 415070.5354 307537.3436 273517.3705 548302.2005 0.73770106 0.51805253 0.393965943 1.128694986 0.593320068 0.619263346 0.757010523 0.560890223 0.498844196 1 19.06461174 -11.08135818 2.453813556 1.559180552 0.646894889 0.236222548 0.191317938 15494965.83 4802581.84 48464923.18 0.04744018 8.29E-12 11.08135818 -0.912285663 ENQSEGKGSDS(ph)DSEGDNPEK ddPTM_HeLa_A486_30min_R1 1 ENQSEGKGSDSDSEGDNPEK 20 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 ENQSEGKGS(0.115)DS(0.769)DS(0.115)EGDNPEK 252.11 4.89E-48 563140000 1007100 893310 318660 938880 825960 1330100 1838500 1652900 720880 2346000 TRUE FALSE FALSE 936507.4907 822520.8622 442053.686 2185760.088 722360.395 1166005.785 1378487.854 1276570.753 783366.4588 1758546.33 0.532546385 0.467727718 0.25137449 1.242935742 0.410771319 0.663050933 0.783879179 0.725923867 0.445462508 1 20.74595191 -13.99923091 0.05205972 2.247451497 1.42E-08 0.163380056 0.259169888 1011.181459 3.875718364 178.5678678 37.51181554 1.00E-14 13.99923091 -2.247451483 ENS(ph)FGSPLEFR ddPTM_HeLa_A485_30min_R1 1 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ENS(0.977)FGS(0.023)PLEFR 74.678 0.010591 88705000 68570 73909 57794 103160 76862 72171 102220 88388 65128 132070 TRUE FALSE FALSE 83823.15994 82552.01463 79174.40561 108795.3696 69209.3494 75949.76196 80379.86194 66710.70441 78198.59221 99147.37957 0.845439993 0.832619228 0.798552679 1.097309582 0.69804517 0.766028939 0.810710906 0.672843848 0.78871063 1 16.59728702 ENS(ph)FGSPLEFR ddPTM_HeLa_A486_30min_R1 1 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ENS(0.993)FGS(0.007)PLEFR 131.96 3.68E-05 76615000 67497 79616 47171 32173 56834 83656 92121 85786 71007 119120 TRUE FALSE FALSE 62765.80885 73306.9382 65436.87448 74900.36993 49705.34976 73335.37327 69071.35144 66254.4005 77161.94393 89291.57666 0.702930906 0.820983803 0.732844877 0.838829067 0.556663368 0.821302255 0.773548346 0.742000567 0.864157033 1 16.44623646 -8.023335281 2.55424061 0.999786363 0.749795483 0.516016498 0.07670687 0.226797425 3.502824143 0.070590901 0.01917105 9.48E-09 8.023335281 -0.24999088 ENS(ph)KETFSGK ddPTM_HeLa_A485_30min_R1 4 ENSKETFSGK 10 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 ENS(0.999)KET(0.001)FSGK;ENS(0.999)KET(0.001)FSGK;ENS(1)KETFSGK;ENS(0.999)KET(0.001)FSGK ;;; 104.7 0.00048678 2177940000 1628210 1269374 775914 3817860 1876070 1627710 3513820 3038810 1266360 5029530 TRUE FALSE FALSE 1990399.697 1417816.247 1062956.877 4026420.024 1689281.884 1712934.379 2763063.652 2293537.083 1520506.836 3775760.733 0.527151967 0.375504792 0.281521249 1.066386434 0.44740173 0.453666029 0.731789922 0.607437082 0.402702116 1 21.84833591 ENS(ph)KETFSGK ddPTM_HeLa_A486_30min_R1 4 ENSKETFSGK 10 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 ENS(0.995)KET(0.005)FSGK;ENS(0.999)KET(0.001)FSGK;ENS(1)KETFSGK;ENS(0.999)KET(0.001)FSGK ;;; 120.29 0.00012423 2293430000 2389600 1709420 613790 2244540 1535920 3339980 4944460 4393650 1638260 6894100 TRUE FALSE FALSE 2222101.38 1573959.334 851465.9259 5225402.553 1343270.592 2927927.226 3707303.811 3393311.808 1780265.696 5167772.487 0.429992107 0.304572103 0.164764592 1.011151819 0.259932223 0.566574328 0.71738913 0.656629489 0.344493822 1 22.30111113 -14 0.082446478 2.508968841 0.057342655 0.302129043 0.236879175 307.9195847 1.786156159 85.30613871 7.408156188 1.00E-14 14 -2.451626186 ENS(ph)LQEDR ddPTM_HeLa_A485_30min_R1 1 ENSLQEDR 8 0 P41002 P41002 CCNF Cyclin-F 1 0 ENS(1)LQEDR 103.88 0.001709 0 98850 111710 112540 141930 154860 98520 135500 132800 110510 198570 TRUE FALSE FALSE 120838.8415 124773.5128 154173.2292 149683.2765 139441.5947 103678.3549 106549.3181 100230.5918 132688.3433 149070.1534 0.810617275 0.837012037 1.034232713 1.004112984 0.935409211 0.695500424 0.714759565 0.672371964 0.890106707 1 17.18563191 -6.24486002 23.68046005 0.769084223 0.929972826 0.236308972 0.11179063 502.4835233 717701.7109 0.037359667 0.03723843 5.69E-07 6.24486002 0.160888603 ENS(ph)PAAFPDREGVPPTALFHPMPVLPK ddPTM_HeLa_A485_30min_R1 2 ENSPAAFPDREGVPPTALFHPMPVLPK 27 1 K7EJD2;A0A0A0MR03;Q9Y5B0;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 K7EJD2;Q9Y5B0-4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 ENS(1)PAAFPDREGVPPTALFHPMPVLPK;ENS(1)PAAFPDREGVPPTALFHPMPVLPK ; 126.67 4.89E-06 470620000 265468 255900 193801 387910 428460 332170 551200 522690 251130 553190 TRUE FALSE FALSE 324520.4407 285825.279 265496.0546 409100.5411 385801.018 349561.9076 433431.6171 394499.458 301529.4875 415289.9137 0.781431068 0.688254806 0.63930292 0.985096261 0.928992025 0.841729828 1.043684431 0.949937489 0.726069855 1 18.66375931 -5.261710767 24.99999996 0.924619729 0.701522113 0.56141728 0.089945317 17.82914035 1642470.133 0.024883676 0.039679297 5.47E-06 5.261710767 -0.223097616 ENS(ph)PAAFPDREGVPPTALFHPMPVLPK ddPTM_HeLa_A486_30min_R1 2 ENSPAAFPDREGVPPTALFHPMPVLPK 27 1 K7EJD2;A0A0A0MR03;Q9Y5B0;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 K7EJD2;Q9Y5B0-4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 ENS(1)PAAFPDREGVPPTALFHPMPVLPK;ENS(1)PAAFPDREGVPPTALFHPMPVLPK ; 163.82 6.33E-14 461650000 351620 288200 152559 201038 334800 354170 516600 498020 229020 522030 TRUE FALSE FALSE 326973.2538 265361.9824 211633.9305 468026.6239 292806.2621 310476.1063 387341.216 384631.7177 248871.638 391310.2902 0.835585626 0.67813699 0.540834054 1.196049876 0.748271307 0.793426889 0.989856964 0.982932796 0.635995639 1 18.57795352 -5.229701537 24.99997067 0.898087141 0.684180735 0.283032292 0.161365229 905.1988726 713026.1155 0.042861875 0.074231198 5.89E-06 5.229701537 -0.213906407 ENS(ph)PNSFPR ddPTM_HeLa_A486_30min_R1 2 ENSPNSFPR 9 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 ENS(0.888)PNS(0.112)FPR;ENS(0.966)PNS(0.034)FPR ; 130.16 0.00024444 645980000 776360 902390 536370 365760 714400 891760 947430 940590 651740 1038170 TRUE FALSE FALSE 721941.1731 830881.33 744066.8285 851507.7645 624793.2905 781743.718 710372.9931 726438.1899 708233.348 778205.4746 0.927699941 1.067688878 0.956131578 1.094194004 0.802864167 1.00454667 0.912834741 0.933478642 0.910085281 1 19.5697916 -5.742704247 24.99999851 0.92711437 1.011497357 0.26395451 0.068821684 323.4203368 431567.4558 0.018785896 0.024209506 1.81E-06 5.742704247 0.084382987 ENS(ph)SPENKNWLLAMAAK ddPTM_HeLa_A486_30min_R1 2 ENSSPENKNWLLAMAAK 17 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ENS(0.5)S(0.5)PENKNWLLAMAAK;ENS(0.5)S(0.5)PENKNWLLAMAAK ; 173.09 1.25E-12 3420300000 1000700 968810 391608 443959 805630 1037550 1316090 1177590 732830 1374330 TRUE FALSE FALSE 930556.0976 892037.9673 543249.1052 1033558.988 704580.3732 909547.63 986790.3618 909478.4636 796352.2944 1030188.823 0.903286929 0.86589754 0.527329644 1.003271406 0.683933234 0.882894097 0.957873295 0.882826957 0.773015856 1 19.97447736 -6.491011337 24.35976935 0.897481647 0.795724091 0.132176263 0.131896322 1049.78741 802469.2554 0.045312592 0.039918368 3.23E-07 6.491011337 -0.101757556 ENS(ph)WKPR ddPTM_HeLa_A485_30min_R1 1 ENSWKPR 7 1 H7C3H8;Q8IUD6-2 H7C3H8 RNF135 1 0 ENS(1)WKPR 59.8 0.018232 112440000 52223 141000 189400 13255 138650 95853 61938 95652 112670 25064 TRUE FALSE FALSE 63839.82618 157488.7235 259466.9416 13979.08709 124845.5192 100871.7149 48704.44031 72193.19702 135281.8355 18816.00607 3.392846811 8.369933709 13.7896927 0.742935936 6.635070095 5.360952505 2.58845794 3.836797074 7.189721083 1 14.19967281 -5.277526266 24.99834516 4.145128625 8.502736169 0.317645752 3.082420524 987.8849169 1535129.336 0.863141681 1.284823385 5.28E-06 5.277526266 4.357607545 ENSFGS(ph)PLEFR ddPTM_HeLa_A485_30min_R1 4 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ENSFGS(1)PLEFR;ENSFGS(1)PLEFR;ENSFGS(1)PLEFR;ENS(0.002)FGS(0.998)PLEFR ;;; 278.93 7.85E-35 6385130000 5092550 5575440 5189460 5364760 5361210 4389510 4804260 4196450 4638450 6153150 TRUE FALSE FALSE 6225370.178 6227439.208 7109257.205 5657823.255 4827429.108 4619337.956 3777790.604 3167264.058 5569344.369 4619282.945 1.347691893 1.348139805 1.53903913 1.224827169 1.045060276 1.000011909 0.817830527 0.68566141 1.205672923 1 22.13923749 -5.75409009 1.867100243 0.915552068 1.406974142 0.688767411 0.138030915 0.184888409 1.329709511 0.048138088 0.063590261 1.76E-06 5.75409009 0.491422074 ENSFGS(ph)PLEFR ddPTM_HeLa_A486_30min_R1 4 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ENSFGS(1)PLEFR;ENSFGS(1)PLEFR;ENS(0.006)FGS(0.994)PLEFR;ENS(0.205)FGS(0.795)PLEFR ;;; 215.61 1.02E-17 7841470000 2353800 2768940 1986250 654976 2206230 2248150 2254780 2133470 2167520 2427720 TRUE FALSE FALSE 2188810.775 2549519.11 2755379.194 1524817.229 1929504.061 1970796.111 1690610.195 1647725.454 2355402.379 1819803.11 1.2027734 1.400986236 1.51410841 0.837902309 1.060281769 1.082972163 0.929007202 0.905441608 1.294317152 1 20.79535094 -5.257953859 24.99985441 1.012811222 1.375459042 0.590549648 0.136171173 205.2292037 1471997.795 0.036890628 0.060792801 5.52E-06 5.257953859 0.36264782 ENSGSGSVGVPIAVPTPS(ph)PPSVFPGHPVQFYSMNRPASR ddPTM_HeLa_A485_30min_R1 2 ENSGSGSVGVPIAVPTPSPPSVFPGHPVQFYSMNRPASR 39 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 ENSGSGSVGVPIAVPT(0.143)PS(0.775)PPS(0.051)VFPGHPVQFY(0.01)S(0.01)MNRPAS(0.01)R;ENSGSGSVGVPIAVPT(0.03)PS(0.877)PPS(0.083)VFPGHPVQFY(0.003)S(0.003)MNRPAS(0.004)R ; 81.426 0.0002611 517790000 71882 103051 102520 74320 108342 95543 107360 121868 85667 101676 TRUE FALSE FALSE 87871.90291 115101.918 140446.4142 78379.91341 97555.09007 100545.4837 84421.65895 91979.68192 102859.5811 76330.04441 1.151209902 1.507950361 1.839988635 1.026855336 1.278069348 1.317246499 1.106008251 1.205025919 1.347563491 1 16.21996341 -5.283257524 24.99101075 1.197860697 1.500539804 0.369223519 0.189020939 857.1770616 981828.4164 0.053241363 0.079047151 5.21E-06 5.283257524 0.302679107 ENSGSGSVGVPIAVPTPSPPSVFPGHPVQFYSMNRPAS(ph)R ddPTM_HeLa_A486_30min_R1 2 ENSGSGSVGVPIAVPTPSPPSVFPGHPVQFYSMNRPASR 39 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 ENSGSGSVGVPIAVPTPS(0.007)PPS(0.007)VFPGHPVQFY(0.225)S(0.331)MNRPAS(0.431)R;ENSGSGSVGVPIAVPT(0.003)PS(0.026)PPS(0.273)VFPGHPVQFY(0.058)S(0.303)MNRPAS(0.336)R ; 97.82 2.82E-05 432480000 179330 229260 224314 69567 314710 267260 336110 315830 217870 241890 TRUE FALSE FALSE 166759.8931 211092.6026 311174.3881 161955.4917 275236.1372 234288.1785 252011.723 243922.4035 236755.147 181319.1696 0.9197036 1.164204552 1.716169277 0.89320667 1.517964912 1.292131323 1.389879093 1.345265391 1.305736992 1 17.46817193 -4.520414411 24.99933872 1.323329402 0.980828702 0.21794293 0.221739206 107.7380471 1092922.132 0.051979645 0.142963254 3.02E-05 4.520414411 -0.342500701 ENSQLDT(ph)SPPCLGGNKK ddPTM_HeLa_A486_30min_R1 1 ENSQLDTSPPCLGGNKK 17 1 Q9Y3E2 Q9Y3E2 BOLA1 BolA-like protein 1 1 0 ENS(0.001)QLDT(0.562)S(0.438)PPCLGGNKK 71.535 0.0062663 170550000 339890 354830 222380 170200 358930 383000 491630 472910 276770 484060 TRUE FALSE FALSE 316065.4662 326711.9785 308491.4915 396234.2014 313909.6525 335749.3541 368618.9741 365238.7166 300760.6464 362848.2253 0.871067968 0.900409471 0.850194296 1.092010857 0.865126603 0.925316236 1.015904029 1.00658813 0.828888294 1 18.46900669 ENSQLDTS(ph)PPCLGGNKK ddPTM_HeLa_A486_30min_R1 1 ENSQLDTSPPCLGGNKK 17 1 Q9Y3E2 Q9Y3E2 BOLA1 BolA-like protein 1 1 0 ENSQLDT(0.044)S(0.956)PPCLGGNKK 90.453 0.00052749 130360000 189600 185500 85124 95616 192360 260870 265560 265430 162300 312010 TRUE FALSE FALSE 176310.0191 170800.3044 118086.2925 222598.8802 168232.4151 228686.5117 199114.0792 204997.3833 176368.2947 233880.6652 0.753846065 0.730288262 0.504899763 0.951762644 0.719308777 0.977791437 0.851349038 0.876504191 0.754095233 1 17.83541307 -5.276456052 24.99617417 0.867391142 0.669739038 0.462252325 0.104837422 706.4126403 1175865.833 0.028364867 0.042259826 5.29E-06 5.276456052 -0.197652104 ENSS(ph)PENKNWLLAMAAK ddPTM_HeLa_A485_30min_R1 2 ENSSPENKNWLLAMAAK 17 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ENS(0.08)S(0.92)PENKNWLLAMAAK;ENS(0.087)S(0.913)PENKNWLLAMAAK ; 262.94 5.24E-52 3260100000 3067600 2240900 1580490 3859800 3095800 2790300 4248800 3595000 2284700 5113200 TRUE FALSE FALSE 3749977.037 2502953.762 2165179.021 4070651.1 2787571.282 2936395.793 3341009.17 2713320.613 2743218.333 3838573.341 0.976919471 0.65205313 0.564058265 1.060459379 0.726199823 0.764970611 0.870377839 0.706856525 0.714645283 1 21.87213878 -11.16017345 2.282203798 1.515020059 0.778076369 0.174924542 0.141930484 14643951.55 3506367.468 38969669.48 0.034664069 6.92E-12 11.16017345 -0.73694369 ENSS(ph)PENKNWLLAMAAK ddPTM_HeLa_A486_30min_R1 1 ENSSPENKNWLLAMAAK 17 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ENS(0.14)S(0.86)PENKNWLLAMAAK 135.04 3.66E-06 26922000 71251 72689 35366 38931 61659 86928 96628 92000 58462 101140 TRUE FALSE FALSE 66256.67284 66928.85891 49060.66233 90633.33546 53925.15327 76203.70718 72450.65237 71053.60835 63529.53323 75813.88569 0.873938491 0.882804757 0.647119744 1.195471445 0.711283333 1.005141822 0.955638294 0.93721101 0.837966985 1 16.21017449 -5.22947648 24.99973205 0.93905903 0.809439455 0.206946506 0.131186159 1164.438293 910762.2896 0.033628946 0.058241444 5.90E-06 5.22947648 -0.129619575 ENSS(ph)PSVTSANLDHTKPCWYWDKK ddPTM_HeLa_A485_30min_R1 1 ENSSPSVTSANLDHTKPCWYWDKK 24 2 G3V5E1;O75909-1;O75909;O75909-4;G3V2Q3;O75909-2;G3V235 G3V5E1 CCNK Cyclin-K 1 0 ENS(0.082)S(0.651)PS(0.117)VT(0.133)S(0.017)ANLDHTKPCWYWDKK 204.25 5.71E-29 478670000 386510 262100 165840 450870 338860 331060 433350 374600 302200 613710 TRUE FALSE FALSE 472487.8161 292750.315 227191.1172 475499.8864 305121.9086 348393.7897 340761.2324 282728.7626 362848.7681 460723.3915 1.02553468 0.635414482 0.49311826 1.032072378 0.662267022 0.756188629 0.739622165 0.613662705 0.787563156 1 18.81354132 -8.027709243 22.58793453 1.00000001 0.73729843 0.180816777 0.161633491 1370.336824 1117067.889 0.15083407 0.03895131 9.38E-09 8.027709243 -0.26270158 ENTLFDIHRS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 ENTLFDIHRSPAR 13 1 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 ENTLFDIHRS(1)PAR;ENTLFDIHRS(1)PAR;ENTLFDIHRS(1)PAR ;; 101.92 0.00038786 153847000 171262 204077 204874 192170 284090 214722 263562 272442 204899 248234 TRUE FALSE FALSE 209358.6411 227942.0299 280665.4181 202667.7605 255805.0021 225964.5119 207249.8256 205625.1723 246020.3499 186353.8322 1.123446932 1.223167923 1.506088792 1.087542757 1.37268442 1.212556293 1.112130742 1.103412631 1.320178646 1 17.50768496 -6.542257168 6.998337514 1.144690033 1.267022291 0.169529812 0.133258952 0.308886601 64.75855703 0.049250734 0.038786787 2.87E-07 6.542257168 0.122332258 ENTLFDIHRS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 ENTLFDIHRSPAR 13 1 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 ENTLFDIHRS(1)PAR 94.01 0.0007715 64104000 32251 35906 33310 12076 47104 36483 38499 42427 31785 34891 TRUE FALSE FALSE 29990.37144 33060.67779 46208.52407 28113.53829 41195.77709 31982.09839 28866.143 32767.29827 34540.14939 26154.0665 1.146681012 1.264074089 1.766781624 1.074920349 1.575119383 1.222834636 1.103696169 1.252856732 1.320641645 1 14.67474766 -6.497953325 24.28774445 1.186497904 1.369322991 0.174578668 0.202899199 988.2180607 962937.9613 0.069914455 0.061352543 3.18E-07 6.497953325 0.182825087 ENTQTTIK ddPTM_HeLa_A485_30min_R1 2 ENTQTTIK 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 169.44 9.19E-05 63382000 50865 53620 44415 59387 67352 61132 79340 84333 51719 82859 FALSE FALSE TRUE 62179.74377 59890.39257 60845.95676 62631.16143 60646.19839 64332.77699 62388.36085 63650.19952 62098.52891 62203.77621 0.99961365 0.962809595 0.978171431 1.006870728 0.974960076 1.034226231 1.002967419 1.023252982 0.998308024 1 15.92471454 -6.245183043 24.82665604 1.012655274 0.984173788 0.439089378 0.015389484 678.8973949 1036810.809 0.004935449 0.004919906 5.69E-07 6.245183043 -0.028481486 ENVEYIEREES(ph)DGEYDEFGR ddPTM_HeLa_A485_30min_R1 6 ENVEYIEREESDGEYDEFGR 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEYIEREES(1)DGEYDEFGR;ENVEY(0.001)IEREES(0.988)DGEY(0.011)DEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR ;;;;; 218 1.40E-35 32168770000 2932372 2044655 6272250 6825080 13085490 5066780 8352870 8822630 7852590 9861180 TRUE FALSE FALSE 3584668.035 2283759.616 8592616.285 7197916.838 11782652.67 5332068.766 6568211.088 6658866.159 9428532.785 7402969.308 0.484220302 0.308492379 1.160698623 0.972301321 1.591611714 0.720260823 0.887240081 0.899485853 1.273615004 1 22.81967262 -4.76058794 24.99910934 1.056662096 0.39635652 0.569999973 0.231604193 15.2581394 447922.9743 0.060478951 0.142193677 1.74E-05 4.76058794 -0.660305576 ENVEYIEREES(ph)DGEYDEFGR ddPTM_HeLa_A486_30min_R1 7 ENVEYIEREESDGEYDEFGR 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(1)DGEYDEFGR ;;;;;; 259.53 5.13E-59 61612710000 6571290 10634150 15359550 6405430 24111520 14055320 17423800 20559940 10695510 9498260 TRUE FALSE FALSE 6110676.505 9791461.225 21307179.1 14912164.75 21087228.33 12321317.52 13064180.95 15878890.48 11622605.42 7119833.873 0.858261108 1.375237316 2.992651161 2.094454031 2.961758477 1.730562502 1.834899688 2.230233284 1.63242649 1 22.76341215 -8.043539317 4.19511198 1.000659712 2.038682927 0.202805823 0.614376703 0.372715018 19.39830337 0.615397416 0.161368714 9.05E-09 8.043539317 1.038023215 ENVEYIEREES(ph)DGEYDEFGRK ddPTM_HeLa_A485_30min_R1 4 ENVEYIEREESDGEYDEFGRK 21 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(0.998)DGEY(0.002)DEFGRK;ENVEYIEREES(1)DGEYDEFGRK ;;; 211.72 2.14E-27 3331550000 554580 328982 830370 1642430 2137440 870820 1731600 1624040 1065340 2549500 TRUE FALSE FALSE 677944.4077 367453.5831 1137558.418 1732151.792 1924628.969 916414.7887 1361629.514 1225741.644 1279143.966 1913956.57 0.354210967 0.191986375 0.594349128 0.905011022 1.005576092 0.47880647 0.711421322 0.640422914 0.668324447 1 20.86812666 -4.915067381 4.389137283 0.752945408 0.27790616 0.598371968 0.161272636 0.146420705 5.176595803 0.044263723 0.097745675 1.22E-05 4.915067381 -0.475039248 ENVEYIEREES(ph)DGEYDEFGRK ddPTM_HeLa_A486_30min_R1 5 ENVEYIEREESDGEYDEFGRK 21 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK;ENVEYIEREES(1)DGEYDEFGRK ;;;; 249.79 2.26E-47 7173500000 1153490 1617200 1558620 1634840 3408410 2815470 3973200 4061530 1786500 2281110 TRUE FALSE FALSE 1072636.308 1489047.182 2162159.405 3805990.14 2980895.436 2468125.937 2979063.336 3136808.282 1941355.258 1709905.208 0.627307468 0.8708361 1.2644908 2.225848615 1.743310343 1.443428516 1.74223888 1.834492501 1.13535841 1 20.70548492 -4.849941156 3.124674772 1.63619697 0.715102491 0.487439441 0.338226901 0.184590011 3.556286446 0.089111339 0.228778807 1.41E-05 4.849941156 -0.921094479 ENVSDLTLGPGNS(ph)PITR ddPTM_HeLa_A485_30min_R1 2 ENVSDLTLGPGNSPITR 17 0 Q6DCA0 Q6DCA0 AMMECR1L AMMECR1-like protein 1 0 ENVSDLTLGPGNS(1)PITR;ENVSDLTLGPGNS(0.999)PIT(0.001)R ; 225.39 2.52E-34 216800000 583350 702690 607250 624080 995780 507850 593830 551360 500420 612570 TRUE FALSE FALSE 713114.195 784863.4829 831897.0448 658171.9101 896636.6468 534440.2407 466953.3694 416138.0955 600849.7039 459867.5725 1.550694673 1.706716302 1.80899262 1.431220528 1.949771413 1.16216118 1.015408342 0.904908544 1.306571152 1 18.81085894 -6.390935774 5.578010107 1.054615439 1.680866206 0.782677843 0.161685884 0.101442905 4.185872053 0.054998615 0.048188037 4.07E-07 6.390935774 0.626250767 ENVSDLTLGPGNS(ph)PITR ddPTM_HeLa_A486_30min_R1 2 ENVSDLTLGPGNSPITR 17 0 Q6DCA0 Q6DCA0 AMMECR1L AMMECR1-like protein 1 0 ENVSDLTLGPGNS(1)PITR;ENVSDLTLGPGNS(0.998)PIT(0.002)R ; 279.27 1.61E-69 199200000 465780 533420 432100 161621 584540 432830 484190 484140 368170 421090 TRUE FALSE FALSE 433131.2273 491149.8565 599420.692 376261.8559 511221.5426 379431.8353 363040.5408 373911.8907 400083.272 315646.3232 1.372204254 1.556013235 1.899026372 1.192036239 1.6196024 1.20207906 1.150149753 1.184591308 1.267504934 1 18.26794942 -6.312119012 6.664605545 1.169717705 1.531159219 0.509379112 0.179969797 0.206500044 22.00821099 0.063071735 0.055864438 4.87E-07 6.312119012 0.361441514 ENYS(ph)DS(ph)EEEDDDDVASSR ddPTM_HeLa_A485_30min_R1 1 ENYSDSEEEDDDDVASSR 18 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 2 0 ENYS(1)DS(1)EEEDDDDVASSR 249.2 1.43E-45 143390000 210590 200340 141470 165040 179570 166690 196500 359500 177750 474580 TRUE FALSE FALSE 257435.019 223768.0203 193805.6401 174055.7173 161691.3803 175417.6306 154516.1697 271332.0613 213422.7946 356275.94 0.722572001 0.628075026 0.543976223 0.488541879 0.453837495 0.492364516 0.43369802 0.761578403 0.59903791 1 18.44263553 -8.358377765 0.998852259 0.997700121 0.542461924 0.626793491 0.101593864 0.812350272 1.405979618 0.103176203 0.033350277 4.38E-09 8.358377765 -0.455238197 ENYS(ph)DS(ph)EEEDDDDVASSR ddPTM_HeLa_A486_30min_R1 1 ENYSDSEEEDDDDVASSR 18 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 2 0 ENYS(1)DS(1)EEEDDDDVASSR 219.35 5.00E-34 161250000 196030 190070 159790 46842 203480 156070 175040 161300 159930 154940 TRUE FALSE FALSE 182289.3093 175008.161 221664.9673 109050.5433 177957.641 136815.6702 131243.1406 124575.5112 173792.8612 116142.0155 1.569538022 1.506846254 1.908568285 0.938941371 1.532241715 1.178003237 1.13002293 1.07261365 1.496382342 1 16.82553045 -5.261026555 24.99999854 1.206562388 1.646170388 0.520853515 0.205695008 30.43574223 1843098.594 0.05475366 0.087866866 5.48E-06 5.261026555 0.439608 ENYSHHTQDDRR ddPTM_HeLa_A485_30min_R1 6 ENYSHHTQDDRR 12 1 Q92804-2;Q92804;A0A075B7E4;A0A075B7F2;A0A075B7D9 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 0 ;;;;; ;;;;; 162.48 3.86E-10 3684465000 786491.3 2375627 2594170 267840.5 1341128 2844779 833168 2012331 2636315 424482.9 FALSE FALSE TRUE 961443.5763 2653435.912 3553861.435 282471.9483 1207600.587 2993727.23 655154.8504 1518803.667 3165399.239 318667.1251 3.017078013 8.326669756 11.1522688 0.886416973 3.789536141 9.394528002 2.055922306 4.766113438 9.933246921 1 18.28169067 -5.25755438 24.98915679 4.770141363 7.581471538 0.130181766 3.461330581 750.1633949 4825193.929 0.948037012 1.566640548 5.53E-06 5.25755438 2.811330175 ENYSHHTQDDRR ddPTM_HeLa_A486_30min_R1 4 ENYSHHTQDDRR 12 1 Q92804-2;Q92804;A0A075B7E4;A0A075B7F2;A0A075B7D9 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 0 ;;; ;;; 125.54 5.66E-05 1778090000 307854 713073 1470630 25580.73 1176826 315899 138866.4 359401 448653 124645.5 FALSE FALSE TRUE 286275.0244 656566.4985 2040097.321 59553.23222 1029217.51 276926.5932 104120.5579 277573.238 487542.6033 93433.45549 3.063945595 7.027102819 21.83476261 0.637386597 11.01551371 2.963891164 1.114381967 2.970812077 5.218073127 1 16.5116516 -6.2781885 21.06592443 2.680410546 8.901964726 0.240556398 5.380574682 159.5166585 200626.7128 1.892516915 1.676981692 5.27E-07 6.2781885 6.22155418 EPAESAAVAHERPPGGTGSADPERPPGATCPES(ph)PGPGPPHPLGVVESGK ddPTM_HeLa_A485_30min_R1 2 EPAESAAVAHERPPGGTGSADPERPPGATCPESPGPGPPHPLGVVESGK 49 2 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 EPAESAAVAHERPPGGTGSADPERPPGAT(0.001)CPES(0.999)PGPGPPHPLGVVESGK;EPAESAAVAHERPPGGTGSADPERPPGAT(0.052)CPES(0.948)PGPGPPHPLGVVESGK ; 192.03 8.79E-26 2200550000 285058 192041 244935 429825 296120 252181 329103 197057 258866 502417 TRUE FALSE FALSE 348468.1687 214498.5244 335546.6491 453305.2514 266637.2531 265384.8072 258787.4555 148728.4618 310818.0317 377173.6882 0.923893102 0.568699597 0.889634297 1.201847492 0.706934925 0.703614318 0.686122769 0.394323534 0.824071354 1 18.52486951 -5.96450861 24.99994858 0.684187895 0.882458783 0.142559654 0.201476899 316.3343483 222822.9464 0.063415568 0.071906272 1.09E-06 5.96450861 0.198270888 EPAESAAVAHERPPGGTGSADPERPPGATCPES(ph)PGPGPPHPLGVVESGK ddPTM_HeLa_A486_30min_R1 2 EPAESAAVAHERPPGGTGSADPERPPGATCPESPGPGPPHPLGVVESGK 49 2 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 EPAESAAVAHERPPGGTGSADPERPPGAT(0.184)CPES(0.816)PGPGPPHPLGVVESGK;EPAESAAVAHERPPGGTGSADPERPPGAT(0.009)CPES(0.991)PGPGPPHPLGVVESGK ; 196.07 1.55E-26 2358500000 699650 874920 549850 171808 743660 890650 843690 787780 809500 800040 TRUE FALSE FALSE 650608.148 805588.1528 762766.6455 399977.7067 650383.2284 780770.6585 632589.8384 608419.6911 879668.1118 599704.7766 1.084880717 1.343307881 1.271903569 0.66695768 1.084505666 1.301925029 1.054835417 1.014532008 1.46683526 1 19.19389294 EPAGEAVALALLES(ph)PRPEGGEEPPRPSPEETQQCK ddPTM_HeLa_A485_30min_R1 1 EPAGEAVALALLESPRPEGGEEPPRPSPEETQQCK 35 2 E5RIV7;Q8IV48 E5RIV7 ERI1 3-5 exoribonuclease 1 1 0 EPAGEAVALALLES(1)PRPEGGEEPPRPSPEETQQCK 141.65 1.27E-09 116550000 52517 39810 38430 66070 52710 40559 53137 40839 46392 78833 TRUE FALSE FALSE 64199.22547 44465.4332 52646.85621 69679.2368 47462.00732 42682.60652 41783.84586 30823.17122 55702.44887 59181.38391 1.084787499 0.751341558 0.889584743 1.177384377 0.801975287 0.72121677 0.706030226 0.520825455 0.94121572 1 15.85285581 -5.982285744 24.90263152 0.745439533 0.958098834 0.239569149 0.163492992 307.5241258 432313.8969 0.049880335 0.056548268 1.04E-06 5.982285744 0.2126593 EPAGEAVALALLES(ph)PRPEGGEEPPRPSPEETQQCK ddPTM_HeLa_A486_30min_R1 1 EPAGEAVALALLESPRPEGGEEPPRPSPEETQQCK 35 2 E5RIV7;Q8IV48 E5RIV7 ERI1 3-5 exoribonuclease 1 1 0 EPAGEAVALALLES(1)PRPEGGEEPPRPSPEETQQCK 130.24 1.20E-06 149930000 41619 50038 36942 20684 35638 46351 52267 48026 43173 48678 TRUE FALSE FALSE 38701.72302 46072.80664 51246.93174 48153.39731 31167.94973 40632.68488 39189.24378 37091.5282 46915.2704 36488.71196 1.060649196 1.262659167 1.404459872 1.319679285 0.854180596 1.113568627 1.074010062 1.016520623 1.285747506 1 15.1551626 -5.726740248 24.99995992 1.061808822 1.272104525 0.374830071 0.129050902 196.5709661 141624.1678 0.038356232 0.049515545 1.88E-06 5.726740248 0.210295703 EPAITSQNS(ph)PEAR ddPTM_HeLa_A485_30min_R1 5 EPAITSQNSPEAR 13 0 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 EPAIT(0.001)S(0.03)QNS(0.97)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR ;;;; 241.3 5.63E-35 7493780000 990990 917307 1344920 1411420 1867660 923420 1154780 904916 1333320 1994760 TRUE FALSE FALSE 1211432.307 1024578.074 1842461.875 1488522.301 1681709.213 971768.8433 908051.8193 682983.9321 1600905.094 1497503.043 0.808968177 0.68419098 1.230356014 0.994002855 1.123008878 0.648926123 0.606377278 0.456081833 1.069049643 1 20.5141275 -6.274478058 24.76028436 0.712735224 0.968340591 0.173636509 0.22138408 1052.446551 1998576.291 0.078708955 0.069845148 5.32E-07 6.274478058 0.255605366 EPAITSQNS(ph)PEAR ddPTM_HeLa_A486_30min_R1 7 EPAITSQNSPEAR 13 0 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR;EPAITS(0.001)QNS(0.999)PEAR;EPAITSQNS(1)PEAR;EPAITSQNS(1)PEAR ;;;;;; 316.54 1.68E-68 15141550000 798971 1651726 1505268 547098 1960568 1553293 1724763 1701714 1430603 1193960 TRUE FALSE FALSE 742967.2588 1520837.216 2088148.082 1273671.793 1714655.28 1361663.502 1293209.055 1314270.87 1554608.82 894984.6446 0.830145258 1.699288614 2.333166378 1.423121391 1.915848825 1.521437838 1.444951109 1.468484268 1.737022897 1 19.7715034 -6.506718099 22.96507415 1.456160463 1.674878742 0.061477418 0.39448765 784.1206437 1114280.044 0.142082083 0.121605996 3.11E-07 6.506718099 0.218718279 EPAKPS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 EPAKPSPSR 9 1 Q15311 Q15311 RALBP1 RalA-binding protein 1 1 0 EPAKPS(0.867)PS(0.133)R 71.555 0.0067404 218820000 237160 318990 165100 99578 230170 325530 326080 312190 268200 326050 TRUE FALSE FALSE 220536.3087 293712.0707 229031.1415 231822.6164 201299.9323 285369.4183 244491.3351 241111.1521 291447.7919 244404.9578 0.902339751 1.201743505 0.937096954 0.948518469 0.82363277 1.167608959 1.000353419 0.986523163 1.19247905 1 17.89891403 -6.28130888 24.98166635 1.064235629 0.973741821 0.184004001 0.110893478 1756.480563 2208392.976 0.039480483 0.034861386 5.23E-07 6.28130888 -0.090493808 EPALPLEPDSGGNTS(ph)PGVTANGEAR ddPTM_HeLa_A485_30min_R1 2 EPALPLEPDSGGNTSPGVTANGEAR 25 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;Q5VY93 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 EPALPLEPDS(0.001)GGNT(0.026)S(0.968)PGVT(0.005)ANGEAR;EPALPLEPDSGGNT(0.04)S(0.96)PGVTANGEAR ; 120.57 5.21E-05 144632000 137850 168613 197016 140398 224355 197610 205953 207231 173957 201315 TRUE FALSE FALSE 168514.2569 188330.8236 269900.4169 148067.5872 202017.4284 207956.554 161949.4591 156407.2723 208868.5743 151130.8754 1.115022039 1.246143934 1.78587212 0.979730891 1.336705209 1.376003106 1.071584205 1.034912766 1.382037745 1 17.2054389 -6.763375176 24.99980752 1.125043061 1.312131099 0.14621895 0.218053586 105.7648481 1365859.568 0.087634644 0.062460684 1.72E-07 6.763375176 0.187088038 EPAPAEALPQQYPEPAPAALCGPPPRAPS(ph)R ddPTM_HeLa_A485_30min_R1 2 EPAPAEALPQQYPEPAPAALCGPPPRAPSR 30 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 EPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;EPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R ; 191.65 2.02E-21 742410000 60039 87992 73705 59967 68174 62549 79089 66244 73014 75273 TRUE FALSE FALSE 73394.46842 98281.89897 100971.5466 63242.84537 61386.35719 65823.96892 62190.98905 49997.55513 87667.24008 56508.8264 1.29881424 1.739230935 1.786827883 1.11916756 1.086314495 1.164844027 1.100553542 0.884774261 1.55139021 1 15.78618861 -5.273464476 24.27365203 1.123234071 1.621385004 0.54303421 0.201073054 345.1619593 696737.4544 0.054610153 0.081749702 5.33E-06 5.273464476 0.498150933 EPAPAEALPQQYPEPAPAALCGPPPRAPS(ph)R ddPTM_HeLa_A486_30min_R1 2 EPAPAEALPQQYPEPAPAALCGPPPRAPSR 30 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 EPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;EPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R ; 156.65 2.43E-10 739580000 130110 167730 141203 41150 158705 132364 155732 152079 136415 144833 TRUE FALSE FALSE 120989.9609 154438.4639 195880.5831 95799.27961 138798.739 116034.2755 116766.2064 117453.9316 148239.562 108565.8741 1.114438233 1.422532313 1.804255571 0.882406929 1.278474845 1.068791427 1.075533241 1.081867876 1.365434242 1 16.72821116 -5.275552566 24.9994564 1.11509139 1.444621105 0.376444076 0.200102934 822.5912557 1457099.071 0.05572177 0.083111773 5.30E-06 5.275552566 0.329529715 EPAPAS(ph)PAPAGVEIR ddPTM_HeLa_A485_30min_R1 4 EPAPASPAPAGVEIR 15 0 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR ;;; 167.18 4.68E-12 1519040000 591850 672890 642940 611640 623950 596410 638260 571160 553230 774430 TRUE FALSE FALSE 723504.9906 751578.6321 880790.261 645052.3444 561827.3472 627637.1054 501890.5369 431082.1145 664258.1865 581378.8533 1.244463892 1.292751926 1.515002233 1.109521512 0.966370455 1.079566451 0.863276217 0.741482274 1.142556498 1 19.14911907 -5.504098843 4.014795775 0.956129593 1.34491186 0.662278132 0.122563266 0.129836731 4.726678252 0.037086323 0.053102913 3.13E-06 5.504098843 0.388782267 EPAPAS(ph)PAPAGVEIR ddPTM_HeLa_A486_30min_R1 4 EPAPASPAPAGVEIR 15 0 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR ;;; 208.66 1.24E-25 2019840000 686090 829880 608960 169710 733840 637990 663370 684770 637790 678370 TRUE FALSE FALSE 637998.634 764117.2864 844765.6205 395093.4567 641794.9444 559281.2804 497387.8096 528862.8194 693074.1507 508501.7366 1.254663629 1.50268373 1.661283649 0.776975629 1.262129307 1.099861102 0.978143778 1.040041324 1.362973026 1 18.95589318 -5.250689978 24.99985347 1.080856162 1.475857672 0.519761854 0.175481395 576.2198265 1340110.361 0.046719643 0.079922944 5.61E-06 5.250689978 0.39500151 EPAPLLSAQYETLS(ph)DSDD ddPTM_HeLa_A486_30min_R1 1 EPAPLLSAQYETLSDSDD 18 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 EPAPLLSAQYETLS(0.5)DS(0.5)DD 159.81 2.07E-11 0 36973 44763 38206 13202 45464 39827 41531 41784 38453 40891 TRUE FALSE FALSE 34381.38363 41215.81686 53000.38639 30734.92319 39761.48119 34913.54967 31139.50453 32270.69534 41786.137 30651.62744 1.121682158 1.344653459 1.729121447 1.002717498 1.297206201 1.139043913 1.015916841 1.052821596 1.363259979 1 14.90367606 -5.29898225 24.99966594 1.129911945 1.393103006 0.327389534 0.179844548 657.9570332 438129.9679 0.050699842 0.075202312 5.02E-06 5.29898225 0.263191061 EPDPDS(ph)DWEPEER ddPTM_HeLa_A485_30min_R1 2 EPDPDSDWEPEER 13 0 Q9NPE2-3;Q9NPE2 Q9NPE2-3 NGRN Neugrin 1 0 EPDPDS(1)DWEPEER;EPDPDS(1)DWEPEER ; 117.2 0.00016296 303160000 455450 447200 334080 497010 468220 547050 730130 756910 412320 654970 TRUE FALSE FALSE 556763.2812 499496.1499 457670.0942 524160.3978 421602.3728 575692.6921 574131.7609 571276.6357 495068.842 491698.0328 1.132327656 1.015859565 0.930795048 1.066020937 0.85744165 1.170825697 1.167651124 1.161844461 1.006855446 1 18.90741306 -6.297118664 24.99985788 1.11568911 1.00111157 0.233394986 0.089628693 801.9514985 561911.0727 0.031010618 0.027349779 5.05E-07 6.297118664 -0.114577539 EPDPDS(ph)DWEPEER ddPTM_HeLa_A486_30min_R1 2 EPDPDSDWEPEER 13 0 Q9NPE2-3;Q9NPE2 Q9NPE2-3 NGRN Neugrin 1 0 EPDPDS(1)DWEPEER;EPDPDS(1)DWEPEER ; 148.48 1.60E-06 121330000 358410 371430 295250 160228 382580 358880 430310 409430 330560 448870 TRUE FALSE FALSE 333287.3098 341996.5341 409578.7071 373018.8815 334593.249 314605.0344 322641.8866 316211.7268 359213.207 336470.0303 0.99054085 1.016424951 1.217281392 1.108624388 0.994422144 0.935016513 0.958902302 0.939791655 1.067593469 1 18.36011848 -5.840334864 5.434694916 0.974458687 1.087793399 0.352468809 0.066493635 0.227607148 11.49420314 0.022069528 0.025363019 1.44E-06 5.840334864 0.113334712 EPDPPDDRDAS(ph)DGEDEKPPLPPR ddPTM_HeLa_A485_30min_R1 5 EPDPPDDRDASDGEDEKPPLPPR 23 2 O15357 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR ;;;; 128.92 1.29E-06 4362450000 4954200 4216840 2553770 6134050 3246390 5158530 6621610 6080040 3110130 7623150 TRUE FALSE FALSE 6056244.698 4709962.756 3498515.794 6469137.619 2923168.013 5428622.654 5206848.93 4588900.657 3734304.563 5722838.999 1.058258794 0.823011578 0.611325217 1.130407062 0.510789839 0.948589093 0.909836697 0.801857375 0.652526581 1 22.44829959 -4.264023983 6.970671949 0.8146821 1.061739763 0.135610589 0.179219135 0.199676151 74.78847665 0.041732038 0.236724008 5.44E-05 4.264023983 0.247057662 EPDPPDDRDAS(ph)DGEDEKPPLPPR ddPTM_HeLa_A486_30min_R1 6 EPDPPDDRDASDGEDEKPPLPPR 23 2 O15357 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR ;;;;; 164.62 1.90E-14 4379200000 4140692 4258417 1798908 1807932 2690248 4336692 5007520 4209592 3286082 8070070 TRUE FALSE FALSE 3850450.873 3920964.528 2495493.354 4208957.064 2352812.01 3801675.033 3754585.532 3251159.796 3570922.234 6049271.945 0.636514759 0.648171311 0.412527884 0.695779112 0.388941352 0.628451666 0.620667341 0.537446461 0.590306117 1 22.52833009 -10.21520982 0.764405651 1.108279194 0.56902564 0.642535021 0.095519411 50.81506685 12.52051564 12.12945814 0.031262447 6.09E-11 10.21520982 -0.539253554 EPDTEVITVEK ddPTM_HeLa_A485_30min_R1 2 EPDTEVITVEK 11 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 0 0 ; ; 73.067 0.02588 150026000 372520 237150 374270 658460 664410 284120 478440 372720 425630 905860 FALSE FALSE TRUE 455385.7888 264882.6296 512728.0477 694430.0025 598259.0075 298996.0839 376217.3855 281309.8356 511050.0369 680045.7731 0.669639908 0.38950706 0.753961083 1.021151855 0.87973344 0.439670528 0.553223622 0.41366309 0.751493586 1 19.37527233 -8.014982738 23.92343042 1.000000024 0.642626746 0.240353345 0.194500377 794.2951472 1268279.084 0.207270912 0.053517119 9.66E-09 8.014982738 -0.357373278 EPEAAS(ph)SRGSPVR ddPTM_HeLa_A485_30min_R1 1 EPEAASSRGSPVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EPEAAS(0.451)S(0.451)RGS(0.097)PVR 151.22 7.37E-07 1070200000 468860 817010 647680 383940 812130 717290 795570 925110 609490 543260 TRUE FALSE FALSE 573156.2895 912552.2125 887283.7842 404913.67 731271.4856 754846.1953 625589.9703 698225.322 731809.0524 407835.28 1.405362208 2.237550936 2.1755935 0.992836299 1.793055975 1.850860463 1.533928037 1.712027763 1.794374073 1 18.63762706 -11.36037109 0.362494121 3.85E-17 1.759833322 0.281818693 0.342633031 75.91762706 3.454377683 61.52125114 0.26099991 4.36E-12 11.36037109 1.759833322 EPEAASS(ph)RGSPVR ddPTM_HeLa_A485_30min_R1 1 EPEAASSRGSPVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EPEAAS(0.086)S(0.728)RGS(0.187)PVR 159.41 4.37E-08 1121200000 591960 1068500 857000 504940 1029000 1020200 1086100 1316600 748230 767260 TRUE FALSE FALSE 723639.4598 1193451.78 1174039.963 532523.5936 926549.147 1073616.094 854045.8624 993701.7857 898392.8978 575996.2024 1.25632679 2.071978557 2.038277263 0.924526223 1.608602875 1.86392912 1.482728287 1.725188086 1.559720175 1 19.13569977 -8.047545947 18.8274654 0.999999992 1.630925816 0.23991839 0.329457778 586.9400583 232421.4245 0.320194926 0.082673938 8.96E-09 8.047545947 0.630925824 EPEAASSRGS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 EPEAASSRGSPVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EPEAAS(0.007)S(0.064)RGS(0.929)PVR;EPEAASS(0.001)RGS(0.999)PVR ; 208.75 1.14E-20 1494590000 1441700 1373150 1348050 496020 1988640 1162430 1513050 1685380 1088560 1504510 TRUE FALSE FALSE 1340644.275 1264336.593 1870051.062 1154759.627 1739206.228 1019021.205 1134468.887 1301655.766 1182917.257 1127770.903 1.188755864 1.121093468 1.658183463 1.023931034 1.542162706 0.903571109 1.005939135 1.154184562 1.048898543 1 20.1050426 -6.277200447 24.98180364 1.031118987 1.300310436 0.371526199 0.184620295 935.1035381 1482165.012 0.062585318 0.055374401 5.28E-07 6.277200447 0.269191449 EPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_A485_30min_R1 3 EPESPPASAPIPLFGADTIGQR 22 0 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 EPES(1)PPASAPIPLFGADTIGQR;EPES(1)PPASAPIPLFGADTIGQR;EPES(1)PPASAPIPLFGADTIGQR ;; 255.24 4.20E-59 421420000 86262 76865.2 89608 89533 102935 70313 103154 78188 80825 119203 TRUE FALSE FALSE 105450.6843 85853.9165 122757.7281 94423.96108 92686.42997 73994.47996 81114.30521 59012.27041 97045.83613 89487.88587 1.178379434 0.959391494 1.371780403 1.055159144 1.035742761 0.826865885 0.906427774 0.659444235 1.084457803 1 16.44940477 -5.949655157 2.247077493 0.875426664 1.149784624 0.395026019 0.142837893 0.287951305 2.946652582 0.048414377 0.05471049 1.12E-06 5.949655157 0.27435796 EPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_A486_30min_R1 4 EPESPPASAPIPLFGADTIGQR 22 0 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 EPES(0.999)PPAS(0.001)APIPLFGADTIGQR;EPES(1)PPASAPIPLFGADTIGQR;EPES(0.999)PPAS(0.001)APIPLFGADTIGQR;EPES(0.993)PPAS(0.007)APIPLFGADTIGQR ;;; 167.53 6.61E-14 464365000 63181.5 75962 59800.2 26158.2 89086 73573 81512 75859 54812.8 78572 TRUE FALSE FALSE 58752.80312 69942.49447 82956.43894 60897.61156 77912.00319 64496.3113 61116.83545 58587.56169 59564.01764 58897.05978 0.997550698 1.187537964 1.408498816 1.033966921 1.32285047 1.095068439 1.037689074 0.994745101 1.011324128 1 15.84590799 -6.582939984 3.443017777 1.010467171 1.194851433 0.353166845 0.113570344 0.267964938 6.486958573 0.045346405 0.03481176 2.61E-07 6.582939984 0.184384263 EPFERLVS(ph)AFRDK ddPTM_HeLa_A486_30min_R1 1 EPFERLVSAFRDK 13 2 Q9H2A9 Q9H2A9 CHST8 Carbohydrate sulfotransferase 8 1 0 EPFERLVS(1)AFRDK 56.122 0.010461 0 179490 193450 122050 96586 170250 217110 252180 224980 144290 270660 TRUE FALSE FALSE 166908.6779 178120.3175 169311.0286 224857.0892 148895.6575 190325.1756 189081.8967 173756.9653 156797.1734 202884.9743 0.822676388 0.877937452 0.834517338 1.108298384 0.73389199 0.938093993 0.931965994 0.85643092 0.772837781 1 17.6303025 -6.711077502 0.007759897 1.779562825 3.05E-06 0.042823549 0.102961571 15446.88833 69.01899596 7809.49445 8012.122001 1.95E-07 6.711077502 -1.779559777 EPFPPS(ph)SPLQK ddPTM_HeLa_A485_30min_R1 3 EPFPPSSPLQK 11 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 EPFPPS(0.5)S(0.5)PLQK;EPFPPS(0.665)S(0.335)PLQK;EPFPPS(0.623)S(0.377)PLQK ;; 101.89 0.0007017 122390000 609970 472450 389290 627750 582190 494270 616610 472200 433920 809300 TRUE FALSE FALSE 745655.7221 527698.9177 533304.5707 662042.393 524225.1194 520149.2129 484866.2363 356392.2096 521003.7638 607556.4041 1.227302876 0.868559551 0.877786107 1.089680544 0.862841896 0.856133207 0.798059625 0.586599379 0.857539745 1 19.21265883 -6.141907151 1.822390129 0.782500989 0.995431446 0.286298767 0.138364938 0.432207695 2.845051159 0.054180486 0.053924788 7.21E-07 6.141907151 0.212930457 EPFPPS(ph)SPLQK ddPTM_HeLa_A486_30min_R1 2 EPFPPSSPLQK 11 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 EPFPPS(0.5)S(0.5)PLQK;EPFPPS(0.578)S(0.422)PLQK ; 88.275 0.0018921 0 485320 557860 339880 272211 523440 574180 729670 627190 415640 634670 TRUE FALSE FALSE 451301.5742 513653.1419 471490.6383 633720.9648 457785.2743 503343.5094 547098.8483 484392.5285 451668.0099 475744.501 0.948621736 1.079682773 0.991058514 1.332061566 0.96225027 1.058012249 1.149984597 1.018177882 0.949391972 1 18.85982746 -7.513944747 18.18759423 0.97772423 1.077008788 0.131323959 0.104443543 23.44244423 47751.62703 0.062412435 0.026481551 3.06E-08 7.513944747 0.099284558 EPFPPSS(ph)PLQK ddPTM_HeLa_A485_30min_R1 1 EPFPPSSPLQK 11 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 EPFPPS(0.146)S(0.854)PLQK 110.08 0.0005603 215990000 184130 142980 109770 173940 162650 138970 173520 137340 108690 242580 TRUE FALSE FALSE 225089.0833 159700.2672 150378.4909 183441.9018 146455.9949 146246.2543 136446.0345 103657.1497 130503.086 182109.2704 1.23601112 0.876947488 0.82575967 1.007317757 0.804220426 0.803068696 0.749253644 0.569203036 0.716619674 1 17.47444484 -1 0.537808883 0.756419017 18.62313067 0.510251828 0.122792232 104.5756443 0.997064695 0.063823612 2147.330652 0.1 1 17.86671166 EPFPPSS(ph)PLQK ddPTM_HeLa_A486_30min_R1 2 EPFPPSSPLQK 11 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 EPFPPS(0.14)S(0.86)PLQK;EPFPPS(0.184)S(0.816)PLQK ; 160.22 8.86E-07 181390000 484770 498470 278270 174530 432790 501720 561700 511600 415380 538290 TRUE FALSE FALSE 450790.1264 458969.4218 386023.5963 406314.6603 378505.4426 439822.8875 421156.7189 395119.8481 451385.4728 403498.6803 1.117203471 1.137474406 0.9566911 1.006978907 0.938058688 1.090023113 1.043762321 0.979234549 1.118678932 1 18.62220443 -4.744752859 24.99922636 1.0163693 1.127339024 0.409287463 0.053176266 232.7997397 348767.7238 0.013385256 0.035198251 1.80E-05 4.744752859 0.110969724 EPGGRS(ph)PAFVQLAPLSSK ddPTM_HeLa_A485_30min_R1 1 EPGGRSPAFVQLAPLSSK 18 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 EPGGRS(1)PAFVQLAPLSSK 47.204 0.025544 43813000 24795 49602 40500 23773 67103 63377 58971 112200 37486 23901 TRUE FALSE FALSE 30310.56221 55402.52242 55482.63535 25071.65879 60421.98971 66695.32172 46371.3641 84682.77408 45009.09636 17942.92057 1.689276955 3.087709284 3.092174161 1.397300885 3.367455676 3.717082817 2.584382176 4.719564676 2.508459879 1 14.13112712 EPGPIAPS(ph)TNSSPVLK ddPTM_HeLa_A486_30min_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 0 EPGPIAPS(0.355)T(0.355)NS(0.145)S(0.145)PVLK 81.632 0.0015778 0 193310 204250 122100 89977 210520 241050 254920 255020 157920 302500 TRUE FALSE FALSE 179759.9673 188064.4861 169380.39 209471.0032 184114.6186 211311.7018 191136.3197 196957.513 171608.6328 226752.0311 0.79276012 0.82938391 0.746985106 0.923788873 0.811964584 0.931906545 0.842931015 0.868603082 0.756811888 1 17.79075595 -5.257849089 24.99878702 0.869309299 0.793677134 0.259336957 0.066379861 469.5798099 3269621.705 0.017181776 0.028307018 5.52E-06 5.257849089 -0.075632166 EPGPIAPSTNS(ph)SPVLK ddPTM_HeLa_A485_30min_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 0 EPGPIAPS(0.038)T(0.038)NS(0.596)S(0.327)PVLK 127.3 1.24E-06 0 277290 259300 265820 396380 339720 294400 419620 360790 278380 540620 TRUE FALSE FALSE 338972.2039 289622.8794 364157.8797 418033.2357 305896.284 309814.3288 329964.759 272305.6868 334248.3125 405853.3834 0.83520852 0.71361455 0.897264615 1.030010474 0.753711307 0.76336515 0.813014681 0.670945957 0.823569117 1 18.63059911 EPGPIAPSTNS(ph)SPVLK ddPTM_HeLa_A486_30min_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 0 EPGPIAPS(0.145)T(0.145)NS(0.444)S(0.266)PVLK 102.65 0.00023128 0 156330 164580 107650 60164 159060 158140 164830 193410 125320 221040 TRUE FALSE FALSE 145372.0743 151538.0814 149334.963 140064.8325 139109.2116 138630.2946 123587.7906 149374.7651 136182.8385 165690.1453 0.877373087 0.914587172 0.901290555 0.845341962 0.839574444 0.836684007 0.74589705 0.901530775 0.821912723 1 17.33812827 -5.262437742 24.46066165 0.84568788 0.899433965 0.071660037 0.061880885 131.1841016 3214155.748 0.01626146 0.025747161 5.46E-06 5.262437742 0.053746085 EPGPIAPSTNSS(ph)PVLK ddPTM_HeLa_A485_30min_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 0 EPGPIAPS(0.092)T(0.092)NS(0.243)S(0.572)PVLK 84.071 0.0021587 267480000 182060 185140 155090 258710 242330 161610 211360 237360 155780 344070 TRUE FALSE FALSE 222558.6189 206790.5125 212464.2448 272842.6722 218202.7743 170071.6497 166201.2093 179147.0878 187043.6171 258299.6811 0.861629476 0.800583692 0.822549389 1.056302784 0.844765945 0.658427641 0.643443339 0.693562946 0.724134139 1 17.97868634 -6.11990084 5.806693001 0.719430379 0.88329604 0.246084062 0.114049076 0.284891705 12.44191596 0.037338477 0.037478057 7.59E-07 6.11990084 0.163865662 EPGS(ph)GT(ph)ESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQK ddPTM_HeLa_A486_30min_R1 1 EPGSGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQK 40 1 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 2 0 EPGS(0.873)GT(0.63)ES(0.476)DT(0.011)S(0.01)PDFHNQENEPSQEDPEDLDGSVQGVKPQK 101.94 0.0005257 357340000 117570 112650 57049 32933 100770 133470 151420 165240 86109 141870 TRUE FALSE FALSE 109328.9501 103723.2037 79139.90063 76669.68834 88130.48696 117003.8284 113533.1144 127618.4592 93572.99745 106344.8286 1.028060806 0.975347886 0.744181938 0.720953613 0.828723767 1.100230542 1.067594127 1.200043865 0.879901719 1 16.69839035 -6.259135842 24.96612333 1.063184301 0.851793742 0.40073776 0.115444596 203.6848655 2207577.117 0.041361675 0.039456079 5.51E-07 6.259135842 -0.211390559 EPHLNYS(ph)PTCLEPPVLSIHPGAID ddPTM_HeLa_A485_30min_R1 1 EPHLNYSPTCLEPPVLSIHPGAID 24 0 O75054;O75054-2 O75054 IGSF3 Immunoglobulin superfamily member 3 1 0 EPHLNY(0.277)S(0.413)PT(0.311)CLEPPVLSIHPGAID 53.262 0.0032459 0 13117 17406 17004 7677.6 18200 12692 18314 17979 13315 20050 TRUE FALSE FALSE 16034.8314 19441.48029 23294.4872 8097.007847 16387.9441 13356.53349 14401.06429 13569.62206 15987.19837 15051.90399 1.065302529 1.291629305 1.547610668 0.537939111 1.088762199 0.887365047 0.956760307 0.901521965 1.062137944 1 13.87765837 -5.248211256 24.99992923 0.922411204 1.300525657 0.489245981 0.178980364 659.0522164 1245545.61 0.046990758 0.080768828 5.65E-06 5.248211256 0.378114453 EPHLNYS(ph)PTCLEPPVLSIHPGAID ddPTM_HeLa_A486_30min_R1 2 EPHLNYSPTCLEPPVLSIHPGAID 24 0 O75054;O75054-2 O75054 IGSF3 Immunoglobulin superfamily member 3 1 0 EPHLNY(0.065)S(0.805)PT(0.13)CLEPPVLSIHPGAID;EPHLNY(0.022)S(0.915)PT(0.063)CLEPPVLSIHPGAID ; 76.899 4.55E-05 24310000 24573 29637 30697 4610 40844 22281 21994.1 22140.1 36237 17674.1 TRUE FALSE FALSE 22850.5596 27288.45618 42583.70049 10732.31298 35720.96466 19532.19676 16490.94355 17099.28254 39378.05234 13248.39032 1.724780071 2.059756357 3.214254673 0.810084298 2.696249416 1.474307164 1.244750732 1.290668687 2.972289567 1 13.69352946 EPHS(ph)PADQPEQQAESTLTSAETR ddPTM_HeLa_A485_30min_R1 2 EPHSPADQPEQQAESTLTSAETR 23 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 EPHS(1)PADQPEQQAESTLTSAETR;EPHS(1)PADQPEQQAESTLTSAETR ; 243.74 5.19E-49 1019170000 199862 220210 186888 216840 199970 196198 236740 225500 171374 297640 TRUE FALSE FALSE 244320.6124 245961.6439 256025.6483 228685.4201 180060.2847 206470.6239 186158.565 170195.7714 205767.1899 223443.8257 1.093431925 1.100776194 1.145816616 1.02345822 0.805841397 0.924038171 0.833133627 0.761693777 0.920890024 1 17.76955265 -5.588135471 4.256120302 0.863456684 1.10938661 0.734455626 0.065136625 0.100012951 3.618792366 0.018985298 0.025260797 2.58E-06 5.588135471 0.245929926 EPHS(ph)PADQPEQQAESTLTSAETR ddPTM_HeLa_A486_30min_R1 1 EPHSPADQPEQQAESTLTSAETR 23 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 EPHS(1)PADQPEQQAESTLTSAETR 195.73 5.62E-22 429380000 135570 131180 90307 63124 117160 156370 170020 155770 113810 200480 TRUE FALSE FALSE 126067.2431 120784.8191 125276.2889 146955.8621 102464.7003 137078.6593 127479.1977 120304.5714 123675.1424 150278.5031 0.838890729 0.803739833 0.833627474 0.977890111 0.681832053 0.912164125 0.848286316 0.800544116 0.822972946 1 17.19727913 -10.02358008 3.958025368 1.000021428 0.835821387 0.317442258 0.07234145 19614809.7 37573841.9 5865.162867 0.017764411 9.47E-11 10.02358008 -0.164200041 EPLIPAS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EPLIPASPK 9 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 EPLIPAS(1)PK;EPLIPAS(1)PK ; 89.548 0.0036405 514160000 908920 848910 602100 1435550 1016610 920400 1343070 1252060 688940 1950840 TRUE FALSE FALSE 1111106.118 948182.64 824841.8455 1513970.461 915392.7389 968590.7208 1056112.123 944990.3218 827203.9387 1464531.491 0.758676837 0.647430694 0.563212093 1.033757534 0.625041349 0.661365581 0.721126264 0.645250941 0.564824959 1 20.48200778 -10.16212986 4.879539716 1.000025051 0.692918918 0.342838366 0.128244702 173131684.3 2.302469373 48730.70132 0.030786298 6.88E-11 10.16212986 -0.307106133 EPLIPAS(ph)PK ddPTM_HeLa_A486_30min_R1 4 EPLIPASPK 9 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 EPLIPAS(1)PK;EPLIPAS(1)PK;EPLIPAS(1)PK;EPLIPAS(1)PK ;;; 119.39 0.00049193 1054570000 2159170 2017190 1055440 1277130 1843530 2084820 2848740 2544120 1545770 3834850 TRUE FALSE FALSE 2007823.333 1857340.518 1464134.634 2973223.183 1612297.277 1827616.105 2135955.121 1964879.414 1679758.588 2874578.599 0.698475712 0.64612619 0.509338876 1.034316189 0.560881264 0.635785748 0.743049824 0.683536507 0.584349507 1 21.45491905 -11.2452224 2.269746015 2.154986419 0.679429823 0.33564116 0.136165471 9413285.823 1366929.54 55948405.58 0.034284408 5.69E-12 11.2452224 -1.475556595 EPLPVEQDDDIEVIVDETSDHTEETS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 EPLPVEQDDDIEVIVDETSDHTEETSPVR 29 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-4;Q676U5-2;C9JAY7;C9J1B2;Q676U5-5;C9JK97 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 EPLPVEQDDDIEVIVDETSDHTEET(0.09)S(0.91)PVR;EPLPVEQDDDIEVIVDETSDHTEET(0.043)S(0.957)PVR ; 229.91 4.21E-39 988710000 238187 287196 284360 205600 292433 220523 270632 286581 258482 290699 TRUE FALSE FALSE 291170.8764 320781.0739 389556.5972 216831.4074 263317.3437 232069.2433 212809.2623 216296.5604 310356.9665 218233.0892 1.334219652 1.469901173 1.785048265 0.993577134 1.20658762 1.063400807 0.975146634 0.991126328 1.422135239 1 17.73551034 -5.27527042 24.99334974 1.091340933 1.523740855 0.595295881 0.164933616 516.4634075 933272.9891 0.046206965 0.068939456 5.31E-06 5.27527042 0.432399922 EPLPVEQDDDIEVIVDETSDHTEETS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 EPLPVEQDDDIEVIVDETSDHTEETSPVR 29 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-4;Q676U5-2;C9JAY7;C9J1B2;Q676U5-5;C9JK97 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 EPLPVEQDDDIEVIVDETSDHTEET(0.169)S(0.831)PVR;EPLPVEQDDDIEVIVDETSDHTEET(0.04)S(0.959)PVR ; 266.19 9.21E-64 1105850000 420210 513810 437800 90216 516180 398480 483050 437620 465990 347100 TRUE FALSE FALSE 390755.449 473093.8243 607327.8847 210027.4073 451435.8912 349319.589 362185.7808 337983.4792 506382.3884 260183.9008 1.501843303 1.818305525 2.334225457 0.80722676 1.73506466 1.342587255 1.392037631 1.299017649 1.946247969 1 17.98917217 -5.252309791 24.99931504 1.388968866 1.87814278 0.308190891 0.35826085 855.0891979 2341463.507 0.093860299 0.159657236 5.59E-06 5.252309791 0.489173914 EPPADVWT(ph)PPAR ddPTM_HeLa_A485_30min_R1 1 EPPADVWTPPAR 12 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 EPPADVWT(1)PPAR 92.295 0.0093353 107720000 63043 81098 69200 81121 101150 84327 94726 101860 80553 113150 TRUE FALSE FALSE 77066.69785 90581.70564 94799.95965 85552.43482 91079.15084 88742.23133 74487.01626 76878.67529 96719.24822 84943.78737 0.907267032 1.066372344 1.116031703 1.007165297 1.072228513 1.044717149 0.876897753 0.905053538 1.138626511 1 16.37422081 EPPADVWT(ph)PPAR ddPTM_HeLa_A486_30min_R1 3 EPPADVWTPPAR 12 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 EPPADVWT(1)PPAR;EPPADVWT(1)PPAR;EPPADVWT(1)PPAR ;; 136.3 6.59E-05 391500000 239560 275390 223765 88384 315216 253653 302654 321645 236422 301644 TRUE FALSE FALSE 222768.0811 253567.0934 310412.8006 205762.4187 275678.67 222359.8718 226926.7681 248413.455 256915.2493 226110.379 0.98521829 1.12143058 1.37283747 0.910008729 1.219221653 0.983412937 1.003610577 1.098638002 1.136238197 1 17.78666769 -5.292047403 24.99759733 1.056594759 1.15598924 0.146850016 0.120329454 1396.36823 1140411.892 0.033556272 0.049776676 5.10E-06 5.292047403 0.099394481 EPPLSLTIHLTSPVVR ddPTM_HeLa_A486_30min_R1 1 EPPLSLTIHLTSPVVR 16 0 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EPG3;K7EKY0;K7EQR9;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 0 72.662 0.012551 16753000 10647 12675 11979 5460.1 16665 12271 14100 14609 11068 11763 FALSE FALSE TRUE 9900.700281 11670.58684 16617.58961 12711.38874 14574.72031 10757.12878 10572.03087 11282.84961 12027.38315 8817.468236 1.122850689 1.323575717 1.884621432 1.44161435 1.652937092 1.219979306 1.198987122 1.279601957 1.364040429 1 13.10614876 -6.284253561 23.77213186 1.229150905 1.495922736 0.303499749 0.205382682 593.5808458 618502.0101 0.074717646 0.065949511 5.20E-07 6.284253561 0.266771831 EPPPPYVT(ph)PATFET(ph)PEVHAGTGVVGNKPR ddPTM_HeLa_A486_30min_R1 2 EPPPPYVTPATFETPEVHAGTGVVGNKPR 29 1 Q96DF8;F8WEF8 Q96DF8 DGCR14 Protein DGCR14 2 0 EPPPPY(0.006)VT(0.985)PAT(0.014)FET(0.993)PEVHAGT(0.002)GVVGNKPR;EPPPPYVT(1)PATFET(1)PEVHAGTGVVGNKPR ; 152.82 1.94E-09 246560000 79725 105847 76181 46069 100103 110300 109975 109820 85768 115007 TRUE FALSE FALSE 74136.6892 97459.29823 105680.3234 107250.9602 87547.14832 96692.30745 82458.0918 84816.38335 93202.4393 86208.49863 0.859969613 1.13050685 1.22586897 1.244088018 1.015528048 1.121609922 0.956496089 0.983851763 1.081128204 1 16.39554248 -6.749274395 24.93441801 1.004023327 1.109486659 0.156122758 0.105813637 392.8307391 805181.0825 0.042414953 0.032602276 1.78E-07 6.749274395 0.105463332 EPPPPYVTPATFET(ph)PEVHAGTGVVGNKPR ddPTM_HeLa_A486_30min_R1 2 EPPPPYVTPATFETPEVHAGTGVVGNKPR 29 1 Q96DF8;F8WEF8 Q96DF8 DGCR14 Protein DGCR14 1 0 EPPPPYVTPAT(0.001)FET(0.995)PEVHAGT(0.004)GVVGNKPR;EPPPPYVTPAT(0.005)FET(0.994)PEVHAGT(0.001)GVVGNKPR ; 91.354 0.0017098 435330000 95704 112856 82003 37099 120195 127061 129314 130466 88056 125052 TRUE FALSE FALSE 88995.64382 103912.8795 113756.7577 86368.34688 105119.0223 111385.5057 96958.26946 100761.7399 95688.76498 93738.16525 0.949406718 1.108543988 1.213558612 0.921378679 1.121411135 1.188262064 1.034352115 1.074927588 1.020809024 1 16.51634894 -7.799247704 1.738709174 0.999200621 1.083098162 0.083093101 0.087507926 0.871669022 5.321593032 0.082213168 0.024248021 1.59E-08 7.799247704 0.083897541 EPPTIRPNS(ph)PYDLCSR ddPTM_HeLa_A485_30min_R1 2 EPPTIRPNSPYDLCSR 16 1 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 0 EPPTIRPNS(0.998)PY(0.002)DLCSR;EPPTIRPNS(0.999)PY(0.001)DLCSR ; 115.74 5.94E-05 570280000 297640 319460 402300 352450 416040 277460 357300 291490 341340 486870 TRUE FALSE FALSE 363848.9912 356818.0681 551127.5111 371703.451 374617.5968 291987.3766 280959.9361 220001.6205 409843.807 365502.2692 0.995476696 0.976240363 1.507863446 1.016966193 1.024939182 0.798866112 0.768695463 0.601915881 1.121316724 1 18.47952084 -5.97958492 2.271894815 0.82877605 1.144775546 0.295096991 0.192013946 0.349810192 3.642582192 0.068529555 0.075901711 1.05E-06 5.97958492 0.315999496 EPPTIRPNS(ph)PYDLCSR ddPTM_HeLa_A486_30min_R1 2 EPPTIRPNSPYDLCSR 16 1 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 0 EPPTIRPNS(1)PYDLCSR;EPPT(0.003)IRPNS(0.988)PY(0.009)DLCSR ; 165.19 2.90E-12 699230000 392930 530200 419560 150839 507640 451530 491520 468360 441520 453510 TRUE FALSE FALSE 365387.6361 488185.021 582024.8682 351160.815 443967.0576 395824.8194 368536.4972 361724.6522 479791.3091 339948.1441 1.074833449 1.436057321 1.712098972 1.032983474 1.305984649 1.164368232 1.084096218 1.064058323 1.411366167 1 18.37495517 -5.29147635 24.99819936 1.158628279 1.41050287 0.284157506 0.185838277 868.6287869 722912.416 0.052017137 0.077165572 5.11E-06 5.29147635 0.251874591 EPPTVPS(ph)ER ddPTM_HeLa_A486_30min_R1 1 EPPTVPSER 9 0 P27815 P27815 PDE4A "cAMP-specific 3,5-cyclic phosphodiesterase 4A" 1 0 EPPTVPS(1)ER 54.198 0.031822 3983200000 79400 0 37360 0 0 26382 0 0 0 0 TRUE FALSE FALSE 73834.47002 0 51826.79254 0 0 23127.25707 0 0 0 0 0 EPS(ph)EQEHRR ddPTM_HeLa_A485_30min_R1 1 EPSEQEHRR 9 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 EPS(1)EQEHRR 84.718 0.0029559 348130000 105720 176990 126560 129720 169740 127360 139630 164740 165450 161210 TRUE FALSE FALSE 129237.0493 197687.4409 173379.8106 136806.2751 152840.0896 134028.3727 109796.9098 124337.2567 198654.2974 121023.3139 1.067869034 1.633465773 1.432614966 1.130412569 1.262897906 1.10745912 0.907237675 1.027382681 1.641454783 1 16.88492547 -5.263095895 24.95120861 1.147312976 1.403531519 0.165797133 0.227928807 228.0778239 3435435.582 0.062957106 0.099183896 5.46E-06 5.263095895 0.256218543 EPS(ph)PALGPNLDGSGLLPR ddPTM_HeLa_A485_30min_R1 2 EPSPALGPNLDGSGLLPR 18 0 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR ; 147.17 4.30E-08 220160000 58302 52956 61703 79960 63452 39553 49609 33928 58582 101479 TRUE FALSE FALSE 71271.07876 59148.74354 84529.50738 84328.01233 57134.49609 41623.93392 39009.63188 25607.1048 70338.87005 76182.15288 0.93553511 0.776412077 1.109570998 1.106926086 0.749972191 0.54637382 0.512057357 0.336129971 0.923298534 1 16.21716544 -5.957393222 5.162327033 0.61531221 0.974870074 0.342980461 0.203302285 0.193676534 12.14742783 0.063936192 0.071806954 1.10E-06 5.957393222 0.359557864 EPS(ph)PALGPNLDGSGLLPR ddPTM_HeLa_A486_30min_R1 4 EPSPALGPNLDGSGLLPR 18 0 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR ;;; 160.43 5.95E-12 386117000 136161 133324 78079.5 34249 113415 122385 109833 115517 106901 119268 TRUE FALSE FALSE 126616.817 122758.9207 108313.9734 79733.40285 99189.43315 107286.383 82351.6217 89216.30082 116167.2648 89402.5165 1.416255627 1.373103638 1.211531595 0.891847411 1.109470259 1.200037619 0.921133151 0.997917109 1.299373545 1 16.44802782 -4.913109961 3.381121589 1.060994359 1.397161198 0.564371876 0.117130071 0.168364431 3.798808499 0.03171033 0.074443892 1.22E-05 4.913109961 0.336166839 EPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_HeLa_A485_30min_R1 2 EPSPALGPNLDGSGLLPRPIFYCSFPTR 28 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EPS(1)PALGPNLDGSGLLPRPIFYCSFPTR;EPS(1)PALGPNLDGSGLLPRPIFYCSFPTR ; 174.46 1.08E-14 1607280000 5517.7 8462.9 12269.3 5914 18901.4 13634.2 18776.4 17492.5 21040 24801 TRUE FALSE FALSE 6745.093329 9452.562538 16808.22464 6237.066845 17019.51025 14348.06563 14764.66875 13202.43695 25262.53501 18618.56713 0.362277789 0.507695489 0.90276682 0.334991775 0.914114933 0.770632108 0.793007789 0.709100591 1.356846359 1 14.18445443 -5.100848793 0.261017662 1.108146592 0.109006559 0.464710618 0.215050913 5.724750594 0.47552965 0.313938123 1.806260906 7.93E-06 5.100848793 -0.999140032 EPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_HeLa_A486_30min_R1 2 EPSPALGPNLDGSGLLPRPIFYCSFPTR 28 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EPS(1)PALGPNLDGSGLLPRPIFYCSFPTR;EPS(1)PALGPNLDGSGLLPRPIFYCSFPTR ; 188.36 8.21E-21 1275390000 15155 15871 15748 6579.2 31023.8 23277 27380 31646 26449 29907 TRUE FALSE FALSE 14092.71276 14613.32416 21846.04735 15316.71009 27132.50572 20405.3204 20529.2344 24440.89663 28741.62062 22418.09254 0.628631215 0.651854039 0.974482878 0.683229854 1.210295018 0.910216619 0.91574403 1.090230874 1.28207253 1 14.45237591 -4.153427097 0.408687399 1.105631941 0.179523552 0.53041615 0.147694658 4.777052478 0.587847573 0.116792883 2.215990437 7.02E-05 4.153427097 -0.926108389 EPS(ph)PEK ddPTM_HeLa_A485_30min_R1 4 EPSPEK 6 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EPS(1)PEK;EPS(1)PEK;EPS(1)PEK;EPS(1)PEK ;;; 85.161 0.01787 9619710000 13474080 8881370 3509540 29232360 4042180 9381070 9944300 8546260 8332790 28273200 TRUE FALSE FALSE 16471342.61 9919968.964 4807864.89 30829249.81 3639726.366 9872248.319 7819619.068 6450276.335 10005104.52 21225211.57 0.776027252 0.46736726 0.2265167 1.452482568 0.171481276 0.465118959 0.368411831 0.303896916 0.471378318 1 24.3392756 -10.01727159 5.102429339 1.000004678 0.516568199 0.143704708 0.349393593 461218821.7 0.268307603 25347.64162 0.083199981 9.61E-11 10.01727159 -0.483436479 EPS(ph)PEK ddPTM_HeLa_A486_30min_R1 3 EPSPEK 6 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EPS(1)PEK;EPS(1)PEK;EPS(1)PEK ;; 89.355 0.016066 4210370000 6780900 2980030 2650960 2829530 1949410 11541800 5047700 4113280 8126000 12748500 TRUE FALSE FALSE 6305593.927 2743881.57 3677482.707 6587288.837 1704896.82 10117890.06 3784712.071 3176775.936 8830368.223 9556192.621 0.659843745 0.287131254 0.384827185 0.68932148 0.17840754 1.058778372 0.396048115 0.332431133 0.924046697 1 23.1880045 -7.842004266 6.472721383 0.985106545 0.499060825 0.374328493 0.240098185 0.227918855 14.22536333 0.221978888 0.057827125 1.44E-08 7.842004266 -0.48604572 EPS(ph)PEKNSK ddPTM_HeLa_A485_30min_R1 4 EPSPEKNSK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EPS(1)PEKNSK;EPS(1)PEKNSK;EPS(1)PEKNSK;EPS(1)PEKNSK ;;; 117.03 0.00029344 4307390000 3560680 2689820 725230 5912120 1272380 4614090 3893910 5764380 2244120 6286370 TRUE FALSE FALSE 4352740.982 3004371.051 993522.7563 6235084.145 1145697.38 4855676.618 3061944.318 4350656.767 2694494.3 4719293.651 0.922328913 0.63661456 0.210523614 1.32119012 0.242768826 1.028899021 0.648814112 0.921887276 0.57095288 1 22.17013951 -14 0.198077451 2.240690612 0.675826493 0.05674184 0.326370753 427.0427233 4.216841239 209.7236545 0.754607666 1.00E-14 14 -1.564864119 EPS(ph)PEKNSK ddPTM_HeLa_A486_30min_R1 4 EPSPEKNSK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EPS(1)PEKNSK;EPS(1)PEKNSK;EPS(1)PEKNSK;EPS(1)PEKNSK ;;; 102.73 0.00072012 1815240000 3117400 872090 1055520 1957570 847460 5071100 2556830 2359330 2349100 5576800 TRUE FALSE FALSE 2898886.358 802982.4123 1464245.612 4557321.89 741163.6645 4445479.241 1917084.091 1822162.063 2552721.879 4180332.981 0.693458242 0.192085754 0.350270091 1.09018155 0.177297758 1.063427067 0.458596026 0.435889215 0.610650369 1 21.99518643 -14 0.257779291 3.765287587 0.523121164 0.158807341 0.301095524 362.9035349 3.578639209 531.7310289 0.399640252 1.00E-14 14 -3.242166423 EPS(ph)PKQDVVGK ddPTM_HeLa_A485_30min_R1 1 EPSPKQDVVGK 11 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 EPS(1)PKQDVVGK 47.201 0.027533 170380000 92910 105220 68721 148660 170170 162830 274200 315830 95478 236260 TRUE FALSE FALSE 113577.509 117524.5637 94143.75762 156780.9194 153227.2773 171355.527 215614.93 238372.1973 114639.5588 177364.73 0.640361299 0.662615187 0.530791875 0.883946427 0.863910639 0.966119515 1.215658434 1.343966172 0.646349242 1 17.43635962 -5.739225863 1.30171022 1.068630512 0.613983442 0.487552389 0.179824845 0.355074177 1.261257884 0.070812119 0.103117123 1.82E-06 5.739225863 -0.45464707 EPS(ph)PKQDVVGK ddPTM_HeLa_A486_30min_R1 1 EPSPKQDVVGK 11 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 EPS(1)PKQDVVGK 108.58 0.00029953 259230000 124750 110870 56041 109200 135380 145390 247300 236800 85455 254870 TRUE FALSE FALSE 116005.6692 102084.2574 77741.57603 254223.1187 118399.378 127453.26 185422.9243 182885.8093 92862.30821 191048.8931 0.60720409 0.53433577 0.406919793 1.330670461 0.619733389 0.667123782 0.970552204 0.957272279 0.48606567 1 17.54358237 EPS(ph)PPRK ddPTM_HeLa_A485_30min_R1 1 EPSPPRK 7 1 O60293-2;O60293;G3V1X1;O60293-4 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 EPS(1)PPRK 56.258 0.025949 302340000 138240 136760 107260 161670 144200 130480 161090 167170 137350 252070 TRUE FALSE FALSE 168991.0111 152752.8923 146939.9375 170501.6227 129842.9417 137311.731 126671.8055 126171.2954 164914.8852 189233.588 0.893028626 0.807218708 0.776500298 0.901011414 0.686151666 0.72562029 0.669393879 0.666748946 0.871488444 1 17.52980866 -3.995658563 0.75507139 0.759011073 1.006208281 0.048834462 0.105888045 8.758889179 2.9121437 0.040721931 2.004945744 0.000101005 3.995658563 0.247197208 EPS(ph)PPRK ddPTM_HeLa_A486_30min_R1 3 EPSPPRK 7 1 O60293-2;O60293;G3V1X1;O60293-4 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 EPS(1)PPRK;EPS(1)PPRK;EPS(1)PPRK ;; 65.305 0.015999 864510000 659670 668620 365368 211123 514530 607170 617730 588870 515470 733480 TRUE FALSE FALSE 613430.5395 615636.1161 506848.2745 491505.0136 449992.8496 532263.5387 463167.4203 454797.1559 560151.3546 549811.8338 1.115709961 1.119721472 0.921857703 0.893951318 0.818448825 0.968083089 0.842410788 0.827186917 1.018805562 1 19.06857843 -4.783869723 4.948506597 0.899378911 1.120856905 0.603340307 0.06655016 0.10223582 6.403104712 0.016801679 0.039842357 1.64E-05 4.783869723 0.221477994 EPS(ph)PVRYDNLSR ddPTM_HeLa_A485_30min_R1 1 EPSPVRYDNLSR 12 1 Q9ULC8-2;Q9ULC8;Q9ULC8-3;Q9C0B5;Q9C0B5-2 Q9ULC8-2;Q9C0B5 ZDHHC8;ZDHHC5 Probable palmitoyltransferase ZDHHC8;Palmitoyltransferase ZDHHC5 1 0 EPS(1)PVRYDNLSR 159.79 1.05E-09 386190000 169510 177650 118400 216770 113360 169600 199870 177570 154630 380960 TRUE FALSE FALSE 207216.9147 198424.6222 162201.087 228611.5962 102073.4804 178479.9937 157166.1417 134020.6791 185662.8226 285993.683 0.72455067 0.693807709 0.567149195 0.799358901 0.356908164 0.624069706 0.549544102 0.468614123 0.649185047 1 18.12562376 -8.035550666 22.96372913 1.000000003 0.595645144 0.498286867 0.120261933 1634.217982 1055612.083 0.115478666 0.029816463 9.21E-09 8.035550666 -0.40435486 EPS(ph)PVRYDNLSR ddPTM_HeLa_A486_30min_R1 1 EPSPVRYDNLSR 12 1 Q9ULC8-2;Q9ULC8;Q9ULC8-3;Q9C0B5;Q9C0B5-2 Q9ULC8-2;Q9C0B5 ZDHHC8;ZDHHC5 Probable palmitoyltransferase ZDHHC8;Palmitoyltransferase ZDHHC5 1 0 EPS(1)PVRYDNLSR 171.78 1.79E-10 0 132770 176490 162720 42488 206130 189110 154790 155810 193880 238110 TRUE FALSE FALSE 123463.5086 162504.2896 225729.5418 98914.21122 180275.2533 165779.5309 116059.9048 120335.4643 210685.6745 178485.7062 0.691727709 0.910461085 1.264692544 0.554185617 1.010026277 0.928811245 0.650247615 0.674202248 1.180406426 1 17.44544902 -2.891923334 14.3996167 0.877414128 0.507521977 0 0.225829971 0 0 0.050201106 0 0.001282557 2.891923334 -0.369892152 EPS(ph)TKGLNPNPS(ph)HQMT(ph)K ddPTM_HeLa_A485_30min_R1 1 EPSTKGLNPNPSHQMTK 17 1 P08912 P08912 CHRM5 Muscarinic acetylcholine receptor M5 3 0 EPS(0.982)T(0.038)KGLNPNPS(0.981)HQMT(0.999)K 50.752 0.03131 849210000 356540 259450 158740 500600 223020 412270 457100 441730 295410 605070 TRUE FALSE FALSE 435851.093 289790.4206 217464.5317 527946.5104 200815.3457 433855.8197 359436.8508 333395.0249 354696.0773 454237.1845 0.959523147 0.637971594 0.478746653 1.162270568 0.442093586 0.955130567 0.791297725 0.733966827 0.780860945 1 18.79308629 -14 0.284751072 2.768487341 0.751227705 0.096059829 0.208901048 562.1816343 5.355510679 588.7243436 0.221217064 1.00E-14 14 -2.017259635 EPSAPSIPTPAYQS(ph)SPAGGHAPTPPTPAPR ddPTM_HeLa_A485_30min_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 0 EPSAPSIPT(0.01)PAY(0.003)QS(0.539)S(0.447)PAGGHAPTPPTPAPR 83.998 0.00084196 823320000 69142 76595 67775 93433 107310 69565 104220 96049 67512 132050 TRUE FALSE FALSE 84522.39936 85552.11896 92847.79285 98537.00821 96625.83961 73207.31583 81952.5456 72492.83215 81061.03914 99132.3652 0.852621636 0.863008956 0.936604233 0.993994323 0.974715366 0.738480472 0.826698177 0.731273101 0.817705085 1 16.59706853 -6.256014772 24.99561663 0.806277611 0.925357836 0.272933768 0.080467161 529.1647397 2438299.774 0.026685199 0.025962146 5.55E-07 6.256014772 0.119080225 EPSAPSIPTPAYQSS(ph)PAGGHAPTPPTPAPR ddPTM_HeLa_A485_30min_R1 3 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 0 EPSAPSIPTPAYQS(0.17)S(0.83)PAGGHAPTPPTPAPR;EPSAPSIPTPAYQS(0.087)S(0.913)PAGGHAPTPPTPAPR;EPSAPSIPTPAYQS(0.179)S(0.821)PAGGHAPTPPTPAPR ;; 213.43 8.55E-30 3894870000 471530 610740 639540 463516 841160 560640 675980 725790 558620 606210 TRUE FALSE FALSE 576420.2217 682160.7303 876132.4595 488836.7054 757411.1569 589994.2435 531551.3508 547788.8645 670729.91 455093.0035 1.266598733 1.498947962 1.925172334 1.074146826 1.664299717 1.296425651 1.168005983 1.203685533 1.473830415 1 18.79580188 -6.467961462 8.236095443 1.228767178 1.487838674 0.233336482 0.236502902 0.535461574 75.06476198 0.081907068 0.071773552 3.40E-07 6.467961462 0.259071496 EPSAPSIPTPAYQSS(ph)PAGGHAPTPPTPAPR ddPTM_HeLa_A486_30min_R1 3 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 0 EPSAPSIPTPAYQS(0.086)S(0.904)PAGGHAPT(0.01)PPTPAPR;EPSAPSIPTPAYQS(0.033)S(0.967)PAGGHAPTPPTPAPR;EPSAPSIPTPAYQS(0.288)S(0.712)PAGGHAPTPPTPAPR ;; 243.73 1.74E-50 4154110000 439328 409845 408221 73456 561478 383252 447411 437416 322776 381502 TRUE FALSE FALSE 408533.3759 377367.3896 566295.1037 171009.2803 491052.1937 335970.2649 335464.0356 337825.9255 350754.4836 285971.416 1.428581155 1.319598283 1.980250724 0.597994312 1.71713733 1.174838624 1.173068414 1.181327596 1.226536863 1 18.12551143 -4.974205496 0.168785116 0.935465547 1.856442921 0.137661668 0.332714173 30.88009054 1.22117668 1.268307052 6.462743015 1.06E-05 4.974205496 0.920977374 EPSAT(ph)PPISNLTK ddPTM_HeLa_A485_30min_R1 1 EPSATPPISNLTK 13 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 EPS(0.005)AT(0.992)PPIS(0.003)NLTK 76.759 0.034704 130980000 345340 298190 238270 383270 399860 282930 423760 381350 301440 429490 TRUE FALSE FALSE 422159.6916 333060.7266 326415.9882 404207.0696 360048.5344 297743.7773 333220.2142 287823.3146 361936.243 322426.0472 1.309322542 1.032983314 1.012374748 1.253642729 1.116685632 0.923448276 1.033477962 0.892680095 1.122540335 1 18.29860877 -6.146943521 6.300469606 0.990644693 1.139391522 0.355663152 0.101466502 0.286166729 13.94671367 0.033104065 0.033158868 7.13E-07 6.146943521 0.148746829 EPSAT(ph)PPISNLTK ddPTM_HeLa_A486_30min_R1 1 EPSATPPISNLTK 13 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 EPS(0.004)AT(0.994)PPIS(0.001)NLTK 86.738 0.0091477 158810000 373790 434750 265020 126050 405520 407200 438100 427000 321750 411840 TRUE FALSE FALSE 347589.2513 400298.8267 367642.8415 293450.7702 354655.9003 356963.8041 328482.7463 329781.4213 349639.5491 308712.5834 1.125931595 1.296671559 1.190890366 0.950563035 1.148822301 1.156298199 1.064040677 1.068247422 1.13257304 1 18.23590476 -1 0.155279316 1.01117452 1.757343101 0.250821174 0.080762648 94.91085213 0.959971241 0.273050196 16.08450275 0.1 1 0.746168581 EPSEVPT(ph)PK ddPTM_HeLa_A485_30min_R1 2 EPSEVPTPK 9 0 P17096-2;P17096;P17096-3 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 EPS(0.002)EVPT(0.998)PK;EPSEVPT(1)PK ; 88.155 0.018721 1261330000 1992660 1525840 1253080 3078100 1862670 1747730 2381600 2055480 1561120 4117900 TRUE FALSE FALSE 2435920.342 1704273.715 1716646.437 3246248.809 1677216.035 1839238.44 1872751.704 1551370.307 1874422.465 3091383.314 0.787970981 0.551298089 0.555300415 1.050095856 0.542545477 0.594956449 0.605797313 0.501836928 0.60633777 1 21.55982112 -9.962118077 4.27199817 1.000012623 0.640889658 0.323816505 0.154265097 76962843.06 154197389.9 14851.81978 0.038961391 1.09E-10 9.962118077 -0.359122965 EPSEVPT(ph)PK ddPTM_HeLa_A486_30min_R1 3 EPSEVPTPK 9 0 P17096-2;P17096;P17096-3 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 EPSEVPT(1)PK;EPSEVPT(1)PK;EPS(0.001)EVPT(0.999)PK ;; 102.53 0.007342 4723660000 5000160 5371420 2557040 2764200 3965700 6185630 6938830 5653960 4233300 7936600 TRUE FALSE FALSE 4649674.605 4945769.117 3547194.368 6435197.295 3468284.927 5422509.861 5202661.343 4366676.733 4600245.852 5949223.701 0.781559887 0.831330164 0.596244913 1.081686892 0.582981092 0.911465114 0.874510962 0.733991013 0.77325145 1 22.50427 -10.46753055 2.876914924 1.005938529 0.797449252 0.162584994 0.13864408 86362684.46 96099387.55 4106095.313 0.031876452 3.41E-11 10.46753055 -0.208489277 EPSVPASCAVSATYERS(ph)PS(ph)PAHLPDDPK ddPTM_HeLa_A485_30min_R1 4 EPSVPASCAVSATYERSPSPAHLPDDPK 28 1 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 2 0 EPSVPASCAVSATYERS(1)PS(1)PAHLPDDPK;EPSVPASCAVSATY(0.001)ERS(0.999)PS(1)PAHLPDDPK;EPSVPAS(0.001)CAVS(0.129)AT(0.1)Y(0.003)ERS(0.768)PS(0.999)PAHLPDDPK;EPSVPASCAVS(0.01)AT(0.077)Y(0.027)ERS(0.885)PS(1)PAHLPDDPK ;;; 161.68 2.46E-13 1878980000 1014702.6 774877 779612 1573476.5 1231581.9 971334 1465550.1 1102781.7 995441.9 2155595.1 TRUE FALSE FALSE 1240419.693 865492.1246 1068022.921 1659431.537 1108961.282 1022191.546 1152423.349 832322.759 1195217.959 1618244.912 0.766521608 0.53483383 0.659988431 1.025451416 0.685286432 0.631666776 0.712143965 0.514336707 0.738589041 1 20.62599854 -10.37782337 4.76339844 1.000333521 0.693240064 0.314778061 0.134241425 0.00049166 6.42E-05 0.134402733 0.03256249 4.19E-11 10.37782337 -0.307093457 EPSVPASCAVSATYERS(ph)PS(ph)PAHLPDDPK ddPTM_HeLa_A486_30min_R1 3 EPSVPASCAVSATYERSPSPAHLPDDPK 28 1 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 2 0 EPSVPAS(0.004)CAVS(0.016)AT(0.017)Y(0.005)ERS(0.964)PS(0.994)PAHLPDDPK;EPSVPASCAVSATY(0.003)ERS(0.997)PS(1)PAHLPDDPK;EPSVPASCAVSATY(0.009)ERS(0.991)PS(1)PAHLPDDPK ;; 234.28 2.72E-49 1256220000 531760 629980 404050 311665 599500 633110 882610 823790 510680 879440 TRUE FALSE FALSE 494486.37 580058.0905 560508.9808 725571.8707 524305.1199 555003.3252 661771.6427 636231.0002 554946.1536 659222.4998 0.75010542 0.879912458 0.850257661 1.100647916 0.79533863 0.84190592 1.003866893 0.965123309 0.841819194 1 19.33040596 -4.200766135 1.51087423 0.926277833 0.667123675 0.265225938 0.089191032 1.864533291 3.554527916 0.025210125 0.752175531 6.30E-05 4.200766135 -0.259154157 EPSVPASCAVSATYERS(ph)PS(ph)PAHLPDDPKVAEK ddPTM_HeLa_A486_30min_R1 1 EPSVPASCAVSATYERSPSPAHLPDDPKVAEK 32 2 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 2 0 EPSVPASCAVS(0.004)AT(0.042)Y(0.227)ERS(0.733)PS(0.993)PAHLPDDPKVAEK 71.656 0.00096983 288620000 80572 63891 35241 33336 62328 71878 93469 94359 49630 90307 TRUE FALSE FALSE 74924.31887 58828.04447 48887.25899 77607.89271 54510.24105 63010.42316 70082.06759 72875.51554 53931.96836 67693.5394 1.10681639 0.869034844 0.722185003 1.146459373 0.805250273 0.93081886 1.035284433 1.076550527 0.796707763 1 16.04673053 -6.560008527 19.78254453 0.98344953 0.921149409 0.024786804 0.136920867 71.90327588 38305.19279 0.051306535 0.039742829 2.75E-07 6.560008527 -0.062300121 EPTGVEENKTDSLFVLPS(ph)RDDATPVRDEPMDAESITFK ddPTM_HeLa_A486_30min_R1 1 EPTGVEENKTDSLFVLPSRDDATPVRDEPMDAESITFK 38 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 EPTGVEENKTDS(0.008)LFVLPS(0.809)RDDAT(0.183)PVRDEPMDAESITFK 145.25 1.07E-09 456810000 264750 258210 131290 140850 247370 328160 400250 382430 231730 415500 TRUE FALSE FALSE 246192.3922 237748.4992 182129.0041 327905.9182 216342.548 287674.9557 300103.2166 295359.0374 251816.543 311456.0955 0.790456169 0.763345148 0.584766221 1.052815863 0.694616516 0.92364529 0.963549023 0.948316766 0.808513773 1 18.24866928 -5.661533222 0.935718995 0.924695979 0.730628029 0.271353418 0.12035447 0.812983143 1.506095628 0.05507175 0.09961003 2.18E-06 5.661533222 -0.19406795 EPTGVEENKTDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_A485_30min_R1 3 EPTGVEENKTDSLFVLPSRDDATPVRDEPMDAESITFK 38 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 EPTGVEENKTDSLFVLPSRDDAT(1)PVRDEPMDAESITFK;EPTGVEENKTDSLFVLPS(0.023)RDDAT(0.977)PVRDEPMDAESITFK;EPTGVEENKTDS(0.008)LFVLPS(0.039)RDDAT(0.952)PVRDEPMDAESITFK ;; 302.88 5.73E-95 1161455000 597725 395793 346988 904851 653211 545121 898911 733898 519922 1143441 TRUE FALSE FALSE 730686.8641 442077.5484 475353.3006 954280.7189 588175.0193 573662.6926 706851.3214 553908.3648 624265.5764 858402.2022 0.851217369 0.515000483 0.553765239 1.111694164 0.685197472 0.668291264 0.823450033 0.645278359 0.72724135 1 19.71129425 -11.17879244 2.126504544 1.65321413 0.727825994 0.200079663 0.161087565 17160172.46 3412179.45 53968652.8 0.04170083 6.63E-12 11.17879244 -0.925388136 EPTGVEENKTDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_A486_30min_R1 1 EPTGVEENKTDSLFVLPSRDDATPVRDEPMDAESITFK 38 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 EPTGVEENKTDS(0.001)LFVLPS(0.077)RDDAT(0.922)PVRDEPMDAESITFK 117.81 6.35E-06 823280000 176460 180000 81388 79933 185960 212290 279320 255080 134420 251230 TRUE FALSE FALSE 164091.0652 165736.1445 112903.6132 186088.0636 162635.1628 186099.8182 209431.1817 197003.8524 146071.6338 188320.3728 0.871339956 0.880075491 0.59952947 0.988146215 0.863608968 0.988208633 1.112100505 1.046110144 0.775654974 1 17.52282956 -5.354641412 25 0.972147275 0.793243881 0.356035416 0.113093441 62.73081341 16822.51309 0.032545175 0.0482723 4.42E-06 5.354641412 -0.178903395 EPTPSIAS(ph)DIS(ph)LPIATQELR ddPTM_HeLa_A485_30min_R1 1 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 2 0 EPTPSIAS(1)DIS(1)LPIATQELR 114.4 3.90E-05 53213000 67996 86960 57794 60316 70474 58089 62774 78020 56918 105100 TRUE FALSE FALSE 83121.47562 97129.21555 79174.40561 63610.91035 63457.36111 61130.45022 49361.82208 58885.47267 68340.92052 78900.50422 1.053497394 1.231034155 1.003471478 0.806216779 0.804270666 0.774778955 0.625621123 0.746325683 0.866165827 1 16.2677469 -5.127782531 2.750578056 0.781628276 1.142163119 0.655398803 0.099405449 0.148735934 2.170550757 0.027837999 0.056123714 7.45E-06 5.127782531 0.360534843 EPTPSIAS(ph)DIS(ph)LPIATQELR ddPTM_HeLa_A486_30min_R1 2 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 2 0 EPT(0.004)PS(0.022)IAS(0.975)DIS(0.999)LPIATQELR;EPT(0.004)PS(0.028)IAS(0.968)DIS(1)LPIATQELR ; 75.97 0.0070725 131383000 139350 142415 135594 45863 162526 137765 138145 126934 135067 133769 TRUE FALSE FALSE 129582.2846 131129.5167 188099.6281 106771.3818 142140.4736 120768.955 103579.6599 98033.89915 146774.7163 100272.3717 1.292302978 1.307733272 1.875886896 1.064813567 1.417543748 1.20440908 1.032983045 0.977676078 1.463760294 1 16.61356463 -6.043544498 1.300744422 1.12005712 1.437036108 0.240910323 0.228673283 0.627612071 2.194750862 0.099971133 0.108934794 9.05E-07 6.043544498 0.316978988 EPTPSIAS(ph)DISLPIATQELR ddPTM_HeLa_A485_30min_R1 4 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 0 EPTPS(0.001)IAS(0.999)DISLPIATQELR;EPTPSIAS(1)DISLPIATQELR;EPTPS(0.001)IAS(0.998)DIS(0.001)LPIATQELR;EPTPS(0.011)IAS(0.986)DIS(0.003)LPIATQELR ;;; 211.06 8.88E-27 433239000 133228 174767 158220 129038 134540 141082 128891 182903 146594 244993 TRUE FALSE FALSE 162864.109 195204.4804 216752.1621 136087.0192 121144.7252 148468.8354 101352.3849 138045.7525 176014.0712 183920.7539 0.885512404 1.061351024 1.178508447 0.739922039 0.658678929 0.807243512 0.551065515 0.750571915 0.957010383 1 17.48872476 -5.276820254 24.6679962 0.756709847 1.043746663 0.413305749 0.140567409 570.0136489 914192.1267 0.039340193 0.058602167 5.29E-06 5.276820254 0.287036816 EPTPSIAS(ph)DISLPIATQELR ddPTM_HeLa_A486_30min_R1 4 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 0 EPTPSIAS(1)DISLPIATQELR;EPTPSIAS(1)DISLPIATQELR;EPTPS(0.003)IAS(0.992)DIS(0.005)LPIATQELR;EPTPS(0.003)IAS(0.995)DIS(0.001)LPIATQELR ;;; 254.53 1.52E-58 390805000 180516 212085 173168 56540.2 226353 161242 173013 156933 200994 197424 TRUE FALSE FALSE 167862.7606 195278.6122 240223.2872 131628.443 197961.6961 141349.6014 129723.3175 121202.7817 218416.3218 147987.7454 1.134301764 1.319559344 1.623264728 0.88945502 1.33768979 0.955143962 0.876581484 0.819005529 1.475908165 1 17.17511819 -5.274830527 24.87698676 1.043740529 1.355093707 0.282323964 0.22519262 912.6940138 1695527.023 0.063244999 0.094417019 5.31E-06 5.274830527 0.311353178 EPTPSIASDIS(ph)LPIATQELR ddPTM_HeLa_A485_30min_R1 1 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 0 EPTPSIASDIS(1)LPIATQELR 133.16 3.46E-07 38290000 19363 21994 21819 17409 20005 20821 19683 24528 20434 34313 TRUE FALSE FALSE 23670.23255 24566.00698 29890.75606 18360.00959 18013.23196 21911.15536 15477.56625 18512.46954 24534.91637 25759.40058 0.918896869 0.95367153 1.160382439 0.712749877 0.699287699 0.850608122 0.600851181 0.718668491 0.952464569 1 14.6528114 -5.276864616 24.9877845 0.769721048 1.005252413 0.372366075 0.129026934 747.9633628 1211645.616 0.03567038 0.053133224 5.29E-06 5.276864616 0.235531365 EPVAES(ph)PK ddPTM_HeLa_A486_30min_R1 4 EPVAESPK 8 0 A0A0G2JNN3;C9JMY0;A0A087WUE4;Q96PV6-1;Q96PV6 A0A0G2JNN3 LENG8 Leukocyte receptor cluster member 8 1 0 EPVAES(1)PK;EPVAES(1)PK;EPVAES(1)PK;EPVAES(1)PK ;;; 98.898 0.0024291 2445700000 4823150 5522630 3941730 2758520 5205430 4812300 6138900 5640240 4378670 7706700 TRUE FALSE FALSE 4485072.092 5084996.686 5468073.419 6421973.968 4552516.431 4218607.354 4602882.289 4356080.478 4758216.641 5776892.158 0.776381481 0.880230502 0.946542409 1.111665891 0.78805633 0.730255514 0.796774834 0.754052587 0.823663747 1 22.46186213 EPVAES(ph)PKK ddPTM_HeLa_A486_30min_R1 1 EPVAESPKK 9 1 A0A0G2JNN3;C9JMY0;A0A087WUE4;Q96PV6-1;Q96PV6 A0A0G2JNN3 LENG8 Leukocyte receptor cluster member 8 1 0 EPVAES(1)PKK 69.602 0.0089249 354670000 432830 405390 139850 361260 333430 569920 800730 645350 297810 1042500 TRUE FALSE FALSE 402490.8521 373265.42 194003.6653 841031.5371 291608.1003 499609.0649 600378.8847 498417.8929 323624.4106 781451.2145 0.515055636 0.477656715 0.248260751 1.076243176 0.373162259 0.63933494 0.768287097 0.637810632 0.414132584 1 19.57579628 -14 0.187236135 2.700076071 0.503151048 0.244238903 0.221258631 201.5935448 1.963568912 128.801223 0.618944791 1.00E-14 14 -2.196925023 EPVRADS(ph)PVHMEQQSR ddPTM_HeLa_A485_30min_R1 1 EPVRADSPVHMEQQSR 16 1 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 EPVRADS(0.978)PVHMEQQS(0.022)R 68.156 0.0047329 625810000 173630 216110 177920 106930 254700 172550 186480 253480 194250 132850 TRUE FALSE FALSE 212253.3945 241382.1846 243740.0119 112771.3151 229341.1737 181584.4512 146637.0246 191313.6326 233234.1932 99732.93992 2.128217564 2.420285462 2.443926872 1.130732888 2.299552925 1.820706893 1.470296822 1.91825923 2.338587366 1 16.60578246 -10.98269623 0.156043629 4.10E-29 2.327625655 0.327075139 0.415343561 55.28208357 1.254704383 25.49878312 2.368575072 1.04E-11 10.98269623 2.327625655 EPVRADS(ph)PVHMEQQSR ddPTM_HeLa_A486_30min_R1 1 EPVRADSPVHMEQQSR 16 1 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 EPVRADS(0.999)PVHMEQQS(0.001)R 96.016 0.00035493 688510000 234380 295080 193180 80109 327060 262520 170120 232260 235930 166910 TRUE FALSE FALSE 217951.1723 271696.7861 267984.4695 186497.8005 286037.0851 230132.9515 127554.1767 179379.4682 256380.6024 125114.6496 1.742011611 2.171582521 2.141911202 1.490615216 2.286199786 1.839376542 1.019498333 1.433720742 2.049165331 1 16.9328912 -6.574022367 10.03136648 1.413193001 1.971308628 0.399431999 0.343896139 0.458172148 86.5355635 0.129205625 0.100060129 2.67E-07 6.574022367 0.558115627 EPYGHLGPAELLEAS(ph)PAAR ddPTM_HeLa_A485_30min_R1 1 EPYGHLGPAELLEASPAAR 19 0 Q9H6W3 Q9H6W3 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 1 0 EPYGHLGPAELLEAS(1)PAAR 176.44 1.92E-16 0 32579 46081 42098 32809 58488 46068 47332 51101 37332 41897 TRUE FALSE FALSE 39826.08615 51469.7721 57671.80204 34601.27259 52664.72936 48480.04925 37219.13153 38568.39963 44824.18997 31452.84896 1.266215541 1.636410494 1.833595492 1.100099792 1.674402514 1.541356375 1.18333101 1.22622913 1.425123366 1 14.94090308 -7.844224755 0.393931315 0.987665096 1.554415804 0.306506491 0.217716448 1.531784704 0.676142007 0.323447423 0.195122002 1.43E-08 7.844224755 0.566750708 EQAKS(ph)S(ph)KDT(ph)S(ph)RK ddPTM_HeLa_A486_30min_R1 1 EQAKSSKDTSRK 12 3 Q03111 Q03111 MLLT1 Protein ENL 4 0 EQAKS(1)S(1)KDT(1)S(1)RK 45.33 0.021664 1803400000 537990 447120 283870 223740 573950 475750 663670 672770 347330 631250 TRUE FALSE FALSE 500279.6792 411688.5828 393792.0663 520878.0272 501959.8391 417056.8021 497612.7464 519594.9575 377436.8441 473180.8913 1.057269405 0.870044819 0.832223096 1.100801061 1.060820182 0.881389781 1.051633224 1.098089477 0.797658678 1 18.85203229 -5.255225089 24.99405127 1.002629578 0.914865687 0.104261292 0.105059196 1087.848422 4375343.91 0.028440981 0.0478188 5.56E-06 5.255225089 -0.087763891 EQAPDIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 EQAPDISPK 9 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 EQAPDIS(1)PK;EQAPDIS(1)PK ; 95.401 0.0026832 467940000 1256480 1227250 796590 2037310 1524060 1190290 1922520 1965320 1033010 2864400 TRUE FALSE FALSE 1535979.641 1370766.212 1091281.79 2148603.087 1372319.235 1252611.744 1511757.896 1483322.188 1240325.632 2150357.795 0.714290266 0.637459596 0.507488471 0.999183992 0.638181812 0.582513174 0.703026213 0.689802502 0.576799654 1 21.0361453 -10.28183604 5.625765704 1.000029749 0.673643906 0.381877787 0.125144319 4.62E-05 5.90E-06 0.119934757 0.029085804 5.23E-11 10.28183604 -0.326385843 EQCCYNCGKPGHLAR ddPTM_HeLa_A485_30min_R1 1 EQCCYNCGKPGHLAR 15 1 P62633-2;P62633-8;P62633-5;P62633;P62633-4;P62633-6;P62633-7;P62633-3 P62633-2 CNBP Cellular nucleic acid-binding protein 0 0 112.5 0.00036172 17809000 6321.9 6577.9 7341.5 6044.8 8309.9 7684.1 8308.8 8175.6 7691.1 8577.1 FALSE FALSE TRUE 7728.184845 7347.128185 10057.42636 6375.012118 7482.537178 8086.427594 6533.557003 6170.521281 9234.633223 6438.98682 1.200217528 1.141037929 1.561957904 0.990064477 1.162067479 1.255854037 1.014687122 0.958306245 1.434174891 1 12.65261798 -5.311058494 24.99994817 1.118182443 1.285070049 0.195125824 0.170878869 637.6883877 321289.5082 0.047210917 0.0700252 4.89E-06 5.311058494 0.166887606 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPES(ph)PEPK ddPTM_HeLa_A485_30min_R1 1 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPESPEPK 37 1 P48681 P48681 NES Nestin 1 0 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPES(1)PEPK 133.51 7.42E-07 99522000 20173 16798 12057 42940 31521 20712 51904 55686 24945 60397 TRUE FALSE FALSE 24660.41425 18762.37998 16517.38603 45285.70347 28382.65856 21796.44829 40814.28638 42028.92119 29951.23269 45341.13942 0.543886073 0.413804775 0.364291375 0.998777359 0.625980267 0.48072123 0.900160139 0.926948941 0.66057521 1 15.46853303 -4.575774517 0.191522528 1.028755884 6.18E-10 0.399265225 0.180811537 14.60648963 0.585344836 0.491749996 3.683512901 2.66E-05 4.575774517 -1.028755883 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPES(ph)PEPK ddPTM_HeLa_A486_30min_R1 1 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPESPEPK 37 1 P48681 P48681 NES Nestin 1 0 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPES(1)PEPK 68.079 0.00071409 44302000 8034.3 7256.7 6182.1 5866.4 9165.5 8472.6 11473 13519 6685.7 10469 TRUE FALSE FALSE 7471.137059 6681.652664 8575.974682 13657.27567 8015.877525 7427.336755 8602.334051 10441.01882 7265.221859 7847.494258 0.952041099 0.851437726 1.092829686 1.74033586 1.021456947 0.946459661 1.096188639 1.330490788 0.925801488 1 12.93801635 -4.880778647 5.733646969 1.167938333 0.905867637 0.152281501 0.228664341 0.355378851 16.25135996 0.061987224 0.133066507 1.32E-05 4.880778647 -0.262070696 EQDLPLAEAVRPKT(ph)PPVVIK ddPTM_HeLa_A485_30min_R1 3 EQDLPLAEAVRPKTPPVVIK 20 2 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK ;; 111.64 2.40E-05 14615900000 2569280 2437050 1562450 3434010 4111950 3858160 6312930 7355780 2437980 5308560 TRUE FALSE FALSE 3140807.472 2722041.798 2140465.274 3621601.271 3702549.82 4060167.292 4964120.934 5551763.422 2927260.224 3985233.689 0.788111242 0.683031915 0.537099061 0.908755058 0.929067179 1.018802813 1.245628568 1.393083532 0.734526618 1 21.92623289 -5.789644592 1.502488319 1.114136184 0.675549145 0.480916337 0.176572065 0.315415317 1.481864597 0.06669927 0.089155938 1.62E-06 5.789644592 -0.438587039 EQDLPLAEAVRPKT(ph)PPVVIK ddPTM_HeLa_A486_30min_R1 5 EQDLPLAEAVRPKTPPVVIK 20 2 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK;EQDLPLAEAVRPKT(1)PPVVIK ;;;; 111.43 2.45E-05 26746930000 5973650 5076750 3049383 4119410 7860160 7416450 11021090 11315980 4450360 9865990 TRUE FALSE FALSE 5554927.983 4674449.841 4230185.763 9590194.663 6874265.44 6501483.804 8263496.713 8739578.38 4836120.788 7395481.887 0.751124547 0.632068324 0.57199596 1.296763999 0.929522314 0.879115642 1.117370962 1.181745627 0.653929096 1 22.81821273 -5.238816632 24.99378822 1.011795745 0.649763441 0.478945404 0.170426421 676.1768704 747044.5277 0.045282229 0.078362673 5.77E-06 5.238816632 -0.362032304 EQDRVHS(ph)PCPTSGSEK ddPTM_HeLa_A485_30min_R1 3 EQDRVHSPCPTSGSEK 16 1 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 EQDRVHS(1)PCPTSGSEK;EQDRVHS(1)PCPTSGSEK;EQDRVHS(1)PCPTSGSEK ;; 170.53 2.12E-12 1544880000 731840 758350 641330 867890 1138470 1025750 1325740 1431550 738510 1243360 TRUE FALSE FALSE 894635.2832 847032.4357 878584.655 915300.6331 1025119.929 1079456.684 1042484.819 1080460.118 886722.183 933413.2343 0.958455752 0.907457067 0.941260122 0.980595303 1.098248762 1.15646173 1.116852408 1.157536746 0.949978156 1 19.8321564 -5.640810992 3.324943318 1.093793743 0.93550806 0.518204437 0.062894606 0.176990918 3.849077216 0.019199752 0.025476835 2.29E-06 5.640810992 -0.158285683 EQDRVHS(ph)PCPTSGSEK ddPTM_HeLa_A486_30min_R1 2 EQDRVHSPCPTSGSEK 16 1 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 EQDRVHS(1)PCPTSGSEK;EQDRVHS(1)PCPTSGSEK ; 198.24 2.66E-25 1243910000 605100 730210 503880 320570 933330 847860 976420 993610 645960 998650 TRUE FALSE FALSE 562685.6147 672345.5002 698995.8304 746303.1607 816263.0484 743259.6536 732109.3885 767386.6934 701952.3329 748581.5399 0.751669103 0.898159338 0.933760443 0.996956405 1.090413008 0.992890706 0.977995515 1.025121049 0.937709916 1 19.51379995 -4.28428329 1.18885691 1.005131588 0.643465854 0.801308467 0.03835221 0.646590069 0.79798858 0.012201496 0.287606001 5.20E-05 4.28428329 -0.361665734 EQDRVHS(ph)PCPTSGSEKK ddPTM_HeLa_A486_30min_R1 2 EQDRVHSPCPTSGSEKK 17 2 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 EQDRVHS(1)PCPTSGSEKK;EQDRVHS(1)PCPTSGSEKK ; 178.22 4.61E-14 467910000 265730 229530 125389 137815 270270 311920 403910 417420 183706 431460 TRUE FALSE FALSE 247103.6992 211341.2069 173942.9788 320840.2848 236370.2164 273438.4818 302847.4459 322382.5782 199629.784 323419.6077 0.764034379 0.653458238 0.537824469 0.992024841 0.730846896 0.845460434 0.93639173 0.996793548 0.617247004 1 18.30304762 -5.260080515 24.99865932 0.869407748 0.651940951 0.39055496 0.127181267 126.4662566 2326544.958 0.034197847 0.055310433 5.49E-06 5.260080515 -0.217466797 EQDVVTGVS(ph)PLLFR ddPTM_HeLa_A485_30min_R1 5 EQDVVTGVSPLLFR 14 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 EQDVVT(0.093)GVS(0.907)PLLFR;EQDVVTGVS(1)PLLFR;EQDVVTGVS(1)PLLFR;EQDVVT(0.033)GVS(0.967)PLLFR;EQDVVTGVS(1)PLLFR ;;;; 317.03 7.10E-69 828602000 654352 855085 832061 714616 1111399 868197 988605 1005427 761421 1006283 TRUE FALSE FALSE 799910.3449 955079.7525 1139874.989 753653.6626 1000744.213 913654.4524 777381.4656 758844.4518 914231.2105 755435.1674 1.058873586 1.26427759 1.508898497 0.99764175 1.324725478 1.209441249 1.0290512 1.004513007 1.210204727 1 19.52694842 -6.691194483 5.6446793 1.061593516 1.237667374 0.247016852 0.142111298 0.288948653 16.57865305 0.054940253 0.041791103 2.04E-07 6.691194483 0.176073858 EQDVVTGVS(ph)PLLFR ddPTM_HeLa_A486_30min_R1 4 EQDVVTGVSPLLFR 14 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 EQDVVTGVS(1)PLLFR;EQDVVT(0.001)GVS(0.999)PLLFR;EQDVVT(0.084)GVS(0.916)PLLFR;EQDVVTGVS(1)PLLFR ;;; 242.67 2.20E-35 762010000 634860 726579 585145 231837 785028 609074 691138 729506 617316 724368 TRUE FALSE FALSE 590359.5924 669002.2339 811728.8147 539728.2524 686562.4681 533932.6425 518207.9623 563413.4088 670825.4479 542981.538 1.087255369 1.232090204 1.494947356 0.994008478 1.264430593 0.983334801 0.954374921 1.037629034 1.235447987 1 19.05054362 -5.823245433 1.571526195 1.047588727 1.247503093 0.231904274 0.144243657 0.544262437 2.788699007 0.054339687 0.069904257 1.50E-06 5.823245433 0.199914366 EQEES(ph)LGSPVHHSPFDAQTTGDGTEDPSLTALR ddPTM_HeLa_A485_30min_R1 1 EQEESLGSPVHHSPFDAQTTGDGTEDPSLTALR 33 0 Q9NP74-3;Q9NP74-2;Q9NP74 Q9NP74-3 PALMD Palmdelphin 1 0 EQEES(0.5)LGS(0.5)PVHHSPFDAQTTGDGTEDPSLTALR 217.39 4.18E-39 911170000 86671 164830 169240 45355 204270 113050 133070 156580 138720 83402 TRUE FALSE FALSE 105950.6649 184105.4347 231848.9187 47832.62881 183932.1616 118969.1232 104638.5074 118178.5095 166559.8316 62611.4163 1.692194031 2.940445138 3.702981539 0.763960179 2.937677702 1.900118704 1.67123687 1.887491395 2.660215044 1 15.93413812 -5.251819934 24.98783052 1.910775996 2.794730594 0.238183106 0.766854661 1043.723748 2711210.248 0.20240842 0.344908862 5.60E-06 5.251819934 0.883954598 EQEES(ph)LGSPVHHSPFDAQTTGDGTEDPSLTALR ddPTM_HeLa_A486_30min_R1 2 EQEESLGSPVHHSPFDAQTTGDGTEDPSLTALR 33 0 Q9NP74-3;Q9NP74-2;Q9NP74 Q9NP74-3 PALMD Palmdelphin 1 0 EQEES(0.333)LGS(0.333)PVHHS(0.333)PFDAQTTGDGTEDPSLTALR;EQEES(0.329)LGS(0.329)PVHHS(0.329)PFDAQT(0.014)TGDGTEDPSLTALR ; 87.719 0.00013811 1143890000 91313 158051 128784 52337.7 181857 139805 150751 171862 131888 109186 TRUE FALSE FALSE 84912.43024 145526.4631 178652.6138 121844.8106 159046.7993 122557.2805 113031.5053 132732.7743 143320.158 81845.11492 1.037477073 1.778071462 2.182813402 1.48872429 1.943265636 1.49742939 1.381041562 1.621755611 1.751114384 1 16.32060869 -6.473761142 23.7398188 1.482996991 1.709068166 0.104999656 0.33443271 544.7541921 263293.5379 0.117055322 0.103230206 3.36E-07 6.473761142 0.226071175 EQEESLGS(ph)PVHHSPFDAQTTGDGTEDPSLTALR ddPTM_HeLa_A486_30min_R1 1 EQEESLGSPVHHSPFDAQTTGDGTEDPSLTALR 33 0 Q9NP74-3;Q9NP74-2;Q9NP74 Q9NP74-3 PALMD Palmdelphin 1 0 EQEES(0.137)LGS(0.625)PVHHS(0.238)PFDAQTTGDGTEDPSLTALR 138.57 4.34E-07 311390000 68449 92479 89999 18162 106050 71030 89803 79703 76387 55442 TRUE FALSE FALSE 63651.07857 85150.62724 124849.0231 42282.05386 92748.22012 62267.04078 67333.33956 61556.3668 83008.28666 41558.96233 1.531584886 2.048911293 3.004141972 1.017399172 2.231726081 1.498281894 1.62018818 1.481181515 1.997361869 1 15.34287201 -5.276868619 24.9993588 1.598741455 2.180282702 0.263390724 0.489612333 1139.836438 1846826.893 0.133846144 0.199318498 5.29E-06 5.276868619 0.581541247 EQEKGEGS(ph)DSKESPK ddPTM_HeLa_A486_30min_R1 1 EQEKGEGSDSKESPK 15 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 EQEKGEGS(0.999)DS(0.001)KESPK 103.1 0.0001822 610100000 518570 249730 84079 631860 239780 652470 990130 718000 276470 1183800 TRUE FALSE FALSE 482220.9209 229940.4853 116636.6405 1471002.012 209704.5565 571974.8852 742389.0015 554527.0738 300434.6422 887368.7748 0.543427867 0.259126185 0.131441002 1.657712165 0.236321767 0.64457405 0.836618351 0.624911637 0.338567967 1 19.75917426 EQEKGEGSDSKES(ph)PK ddPTM_HeLa_A485_30min_R1 3 EQEKGEGSDSKESPK 15 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 EQEKGEGSDS(0.003)KES(0.997)PK;EQEKGEGSDS(0.028)KES(0.972)PK;EQEKGEGSDS(0.211)KES(0.788)PK ;; 86.96 0.0006212 2331450000 1493920 797170 260711 4926500 645890 953680 1712740 1938350 677600 5348600 TRUE FALSE FALSE 1826237.35 890392.097 357158.848 5195622.22 581582.9237 1003613.21 1346799.107 1462966.623 813588.1047 4015292.454 0.454820507 0.221750248 0.088949647 1.293958605 0.144841984 0.249947724 0.335417438 0.364348709 0.202622378 1 21.93707364 -10.3781824 3.183983334 1.006530916 0.375564296 0.250921853 0.324991562 154995811.1 204811005 9350242.175 0.08475987 4.19E-11 10.3781824 -0.630966621 EQEKGEGSDSKES(ph)PK ddPTM_HeLa_A486_30min_R1 2 EQEKGEGSDSKESPK 15 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 EQEKGEGSDS(0.005)KES(0.995)PK;EQEKGEGSDS(0.001)KES(0.999)PK ; 105.38 0.00013968 1504300000 2239400 429870 407740 3361500 445130 4547300 3033800 1912110 1787140 7544500 TRUE FALSE FALSE 2082429.624 395805.5356 565627.8477 7825741.881 389297.6447 3986300.36 2274711.152 1476764.294 1942050.734 5655308.094 0.368225672 0.069988324 0.100017159 1.383787011 0.068837566 0.704877664 0.402225858 0.261128885 0.343403171 1 22.43117419 -11.08022031 2.430750923 1.917088177 0.41465695 0.18298816 0.373066377 36417355.52 11216468.61 185036238 0.092152976 8.31E-12 11.08022031 -1.502431226 EQEKGEGSDSKES(ph)PKTK ddPTM_HeLa_A485_30min_R1 1 EQEKGEGSDSKESPKTK 17 3 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 EQEKGEGSDS(0.022)KES(0.977)PKTK 115.46 9.98E-05 215150000 112230 62529 33882 419520 188250 176180 483810 625420 99823 797750 TRUE FALSE FALSE 137195.1763 69841.22262 46416.36175 442437.3153 169507.169 185404.5124 380440.0411 472034.7644 119856.5605 598885.6065 0.22908411 0.116618636 0.077504554 0.738767655 0.283037641 0.309582515 0.635246593 0.788188528 0.200132645 1 19.19192093 -8.208369891 0.171648262 1.27615258 1.36E-20 0.470873049 0.223235486 5.85226438 0.633636477 2.490383229 1.457961018 6.19E-09 8.208369891 -1.27615258 EQEKGEGSDSKES(ph)PKTK ddPTM_HeLa_A486_30min_R1 2 EQEKGEGSDSKESPKTK 17 3 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 EQEKGEGS(0.002)DS(0.031)KES(0.94)PKT(0.027)K;EQEKGEGSDSKES(0.994)PKT(0.006)K ; 116.48 8.90E-05 399420000 326400 96292 56085 1025910 223370 663700 1115500 860020 215020 1203680 TRUE FALSE FALSE 303521.0455 88661.47123 77802.61401 2388370.327 195352.8518 581819.442 836390.1014 664212.2201 233658.1067 902270.6934 0.336396879 0.098264824 0.086229792 2.647066279 0.216512465 0.644839122 0.926983562 0.736156261 0.258966747 1 19.7832008 EQEPIGTDLDAVRT(ph)PEPLEEFPK ddPTM_HeLa_A485_30min_R1 1 EQEPIGTDLDAVRTPEPLEEFPK 23 1 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 EQEPIGT(0.001)DLDAVRT(0.999)PEPLEEFPK 128.3 3.59E-06 111680000 75767 82249 52382 76752 52601 74713 87854 89086 56361 99490 TRUE FALSE FALSE 92621.10776 91867.30508 71760.2816 80944.76741 47363.85975 78624.85715 69083.2752 67237.51882 67672.13573 74688.97398 1.240090777 1.22999822 0.960788156 1.083757924 0.63414795 1.052696977 0.9249461 0.900233532 0.906052555 1 16.18860766 -4.810682629 1.732543709 0.914850986 1.270850265 0.51277291 0.116733789 0.315484229 1.737753503 0.032801411 0.131739395 1.55E-05 4.810682629 0.355999279 EQEPIGTDLDAVRT(ph)PEPLEEFPK ddPTM_HeLa_A486_30min_R1 1 EQEPIGTDLDAVRTPEPLEEFPK 23 1 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 EQEPIGT(0.001)DLDAVRT(0.999)PEPLEEFPK 85.982 0.0031297 81725000 76893 70614 32591 27005 48299 64269 69464 63143 65452 107120 TRUE FALSE FALSE 71503.19778 65018.28947 45211.10802 62869.00476 42240.88905 56340.14422 52083.37248 48766.7173 71125.43206 80296.45477 0.890490097 0.809728022 0.563052356 0.782961152 0.526061694 0.701651703 0.648638506 0.60733338 0.885785459 1 16.29304867 -7.940917662 4.622054619 0.998310375 0.688168002 0.481207 0.107482882 0.150240831 6.193470963 0.104454109 0.027326283 1.15E-08 7.940917662 -0.310142374 EQGLTLPLYQS(ph)PVKELDKFK ddPTM_HeLa_A486_30min_R1 1 EQGLTLPLYQSPVKELDKFK 20 2 P51587 P51587 BRCA2 Breast cancer type 2 susceptibility protein 1 0 EQGLTLPLYQS(1)PVKELDKFK 71.54 0.0020375 88551000 41617 34623 12229 34162 36191 57130 71099 63991 30456 82525 TRUE FALSE FALSE 38699.86321 31879.34739 16964.3963 79530.86245 31651.58731 50081.88146 53309.27819 49421.64621 33095.9506 61860.20285 0.625601945 0.515345019 0.274237644 1.285654731 0.511663167 0.809597757 0.861770181 0.798924736 0.535011996 1 15.91672394 -5.220001881 24.99997218 0.807909879 0.476089941 0.348526038 0.222485555 587.7226931 354582.647 0.05781674 0.1001403 6.03E-06 5.220001881 -0.331819938 EQGSNNVIVTS(ph)ADREMLKLS(ph)S(ph)QEK ddPTM_HeLa_A485_30min_R1 1 EQGSNNVIVTSADREMLKLSSQEK 24 2 Q9H6A9-2;Q9H6A9 Q9H6A9-2 PCNXL3 Pecanex-like protein 3 3 0 EQGS(0.056)NNVIVT(0.578)S(0.603)ADREMLKLS(0.885)S(0.879)QEK 40.544 0.032502 1027600000 178360 291310 241050 33489 212610 277250 159310 245380 248560 48712 TRUE FALSE FALSE 218035.5667 325376.1704 330224.4259 35318.41927 191441.8019 291766.3813 125272.1171 185200.1703 298443.7121 36568.99488 5.962306796 8.897596763 9.030175071 0.965802298 5.235085146 7.978517929 3.425637414 5.064404173 8.161113344 1 15.15833335 -5.209814526 24.99996873 4.841462973 8.056784646 0.28846733 2.426711899 471.003841 228088.5281 0.647736805 1.121911601 6.17E-06 5.209814526 3.215321673 EQGVLSFWR ddPTM_HeLa_A485_30min_R1 1 EQGVLSFWR 9 0 P05141;P12236 P05141;P12236 SLC25A5;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 138.08 0.0069619 45162000 50815 69224 51676 53555 52479 60682 62663 71449 50990 98056 FALSE FALSE TRUE 62118.62144 77319.14463 70793.10282 56480.57404 47254.0065 63859.21569 49274.53814 53926.02072 61223.22529 73612.44379 0.843860335 1.05035427 0.961700212 0.767269379 0.641929599 0.867505715 0.669377833 0.732566642 0.831696683 1 16.16766205 -5.261190489 23.00425185 0.768434042 0.961809907 0.318161369 0.107840485 6.997724218 646639.1488 0.028190763 0.045152911 5.48E-06 5.261190489 0.193375865 EQGVLSFWR ddPTM_HeLa_A486_30min_R1 1 EQGVLSFWR 9 0 P05141;P12236 P05141;P12236 SLC25A5;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 150.27 0.0031052 55996000 48544 55325 53712 22886 79285 46001 48572 54015 60413 65666 FALSE FALSE TRUE 45141.31628 50940.84551 74510.72486 53279.76459 69340.336 40325.86432 36418.77186 41716.96364 65649.64748 49222.80619 0.917081324 1.034903319 1.513743946 1.082420299 1.408703432 0.819251632 0.739875978 0.847512909 1.333724193 1 15.58703929 -6.276215071 24.97910871 0.925530187 1.194534706 0.229977717 0.220638267 1170.007006 1977954.338 0.079391363 0.070300937 5.29E-07 6.276215071 0.269004519 EQHNVS(ph)PRDS(ph)AEGNDSYPSGIHLELQR ddPTM_HeLa_A485_30min_R1 2 EQHNVSPRDSAEGNDSYPSGIHLELQR 27 1 P50443 P50443 SLC26A2 Sulfate transporter 2 0 EQHNVS(1)PRDS(1)AEGNDSYPSGIHLELQR;EQHNVS(1)PRDS(1)AEGNDSYPSGIHLELQR ; 181.38 1.06E-19 529140000 103652 121056 82469 95157 81625 124724 154552 144751 135698 252340 TRUE FALSE FALSE 126709.0298 135212.4462 112977.7149 100355.186 73498.1284 131254.3558 121530.7026 109250.5903 162931.3439 189436.282 0.668874138 0.713762141 0.596389001 0.529756945 0.387983377 0.692868095 0.641538682 0.576714181 0.860085208 1 17.53135315 -7.904464089 3.330304126 0.997474338 0.59890771 0.694649286 0.089358644 0.129422714 2.759407747 0.092765961 0.024814659 1.25E-08 7.904464089 -0.398566628 EQHNVS(ph)PRDS(ph)AEGNDSYPSGIHLELQR ddPTM_HeLa_A486_30min_R1 2 EQHNVSPRDSAEGNDSYPSGIHLELQR 27 1 P50443 P50443 SLC26A2 Sulfate transporter 2 0 EQHNVS(1)PRDS(1)AEGNDSYPSGIHLELQR;EQHNVS(1)PRDS(1)AEGNDSYPSGIHLELQR ; 144.24 1.62E-08 383380000 75328 90110 112439 16786.4 142817 105142 89425 97643 129787 100728 TRUE FALSE FALSE 70047.89619 82969.35543 155978.392 39079.58754 124903.5601 92170.64905 67049.91916 75411.82043 141037.0417 75505.05317 0.927724612 1.098858314 2.065800704 0.51757579 1.654241073 1.220721596 0.888018965 0.998765212 1.867915268 1 16.20428558 -4.527820039 24.9961226 1.269436525 0.970507678 0.058059009 0.447357095 349.9873989 1770462.231 0.109278119 0.291368737 2.97E-05 4.527820039 -0.298928847 EQHNVSPRDS(ph)AEGNDSYPSGIHLELQR ddPTM_HeLa_A485_30min_R1 1 EQHNVSPRDSAEGNDSYPSGIHLELQR 27 1 P50443 P50443 SLC26A2 Sulfate transporter 1 0 EQHNVS(0.006)PRDS(0.994)AEGNDSYPSGIHLELQR 197.91 2.00E-28 206990000 63548 77125 68219 45898 65225 90060 87238 76181 80871 127350 TRUE FALSE FALSE 77684.03336 86144.09785 93456.04693 48405.29152 58730.96998 94775.40234 68598.88863 57497.4903 97101.06791 95603.9887 0.812560589 0.901051295 0.977532927 0.506310377 0.614315059 0.99133314 0.717531659 0.60141309 1.015659171 1 16.54478319 -9.243219392 13.46049195 1 0.785959066 0.115362439 0.170879969 0 0 0.167942835 0.04073212 5.71E-10 9.243219392 -0.214040934 EQHNVSPRDS(ph)AEGNDSYPSGIHLELQR ddPTM_HeLa_A486_30min_R1 1 EQHNVSPRDSAEGNDSYPSGIHLELQR 27 1 P50443 P50443 SLC26A2 Sulfate transporter 1 0 EQHNVS(0.068)PRDS(0.927)AEGNDS(0.004)YPSGIHLELQR 92.865 0.0017732 142390000 36291 38349 47192 5815.6 56062 38484 36193 39679 40214 27365 TRUE FALSE FALSE 33747.18831 35310.08558 65466.00625 13539.0107 49030.1812 33736.23536 27137.12859 30644.95789 43699.7819 20512.62588 1.64519104 1.721383005 3.191498086 0.660033034 2.390244013 1.644657078 1.322947571 1.493955872 2.130384581 1 14.32422457 -6.158215799 0.848752252 1.510515548 1.987239879 0.076193368 0.655056481 1.824182255 2.873945978 0.397512041 0.416213796 6.95E-07 6.158215799 0.476724332 EQIS(ph)DIDDAVR ddPTM_HeLa_A485_30min_R1 2 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 EQIS(1)DIDDAVR;EQIS(1)DIDDAVR ; 164.15 6.10E-08 4059500000 1245500 1459170 1445350 1382740 1684670 1549580 1728020 1610850 1277140 1819290 TRUE FALSE FALSE 1522557.178 1629807.238 1980045.111 1458275.585 1516938.34 1630713.613 1358814.41 1215786.512 1533450.283 1365774.485 1.114793983 1.193320901 1.449759923 1.067727946 1.110679952 1.193984535 0.994903936 0.890181011 1.122769755 1 20.38128786 -6.353159495 1.018961364 0.992426488 1.225376666 0.37289076 0.11336329 0.556331024 1.208305587 0.068871576 0.057195505 4.43E-07 6.353159495 0.232950178 EQIS(ph)DIDDAVR ddPTM_HeLa_A486_30min_R1 6 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 EQIS(1)DIDDAVR;EQIS(1)DIDDAVR;EQIS(1)DIDDAVR;EQIS(1)DIDDAVR;EQIS(1)DIDDAVR;EQIS(1)DIDDAVR ;;;;; 173.71 2.03E-08 4590616000 2959877 3906907 2973354 1149633 3909913 3377117 3350076 3558317 2920277 3459028 TRUE FALSE FALSE 2752404.907 3597309.461 4124716.298 2676403.723 3419495.253 2960482.641 2511851.551 2748165.897 3173408.962 2592864.874 1.061530408 1.387387942 1.590794931 1.032218744 1.318809664 1.141780534 0.968755285 1.059895532 1.223900633 1 21.30611559 -6.1100656 1.312105708 1.067894646 1.315852301 0.266823491 0.162850999 0.580583837 2.049962652 0.074488828 0.07649006 7.76E-07 6.1100656 0.247957655 EQISDIDDAVR ddPTM_HeLa_A485_30min_R1 1 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 0 138.99 0.0012441 51626000 20412 27910 27611 22488 31972 26913 28144 29715 25453 31784 FALSE FALSE TRUE 24952.57898 31173.83172 37825.45789 23716.4625 28788.75542 28322.12306 22130.80448 22427.34966 30561.18363 23860.83374 1.045754698 1.306485434 1.585252984 0.993949447 1.20652764 1.186971225 0.927495021 0.939923135 1.280809546 1 14.54235683 -5.869833684 1.269921506 1.050920836 1.286102096 0.196766885 0.176285552 0.690337816 2.339927691 0.075076786 0.096594473 1.35E-06 5.869833684 0.23518126 EQLEEEEEAK(ac)HNLEK ddPTM_HeLa_A485_30min_R1 1 EQLEEEEEAKHNLEK 15 1 P35579 P35579 MYH9 Myosin-9 0 1 EQLEEEEEAK(1)HNLEK 110.22 0.00051374 7914100 11495 13280 13803 17844 22399 13356 25028 20828 12474 38708 FALSE TRUE FALSE 14052.02309 14832.98048 18909.30409 18818.77254 20168.87691 14055.29951 19680.56334 15719.90034 14977.41738 29058.80797 0.483571904 0.51044697 0.650725388 0.647609928 0.694071035 0.483684655 0.677266712 0.54096852 0.515417473 1 14.8266879 -10.58596195 3.107727117 1.021529403 0.582825322 0.722862904 0.078305044 113549197 130399786.9 20194296.59 0.020497426 2.59E-11 10.58596195 -0.438704081 EQLEEEEEAKHNLEK ddPTM_HeLa_A485_30min_R1 1 EQLEEEEEAKHNLEK 15 1 P35579 P35579 MYH9 Myosin-9 0 0 235.24 7.42E-31 23471000 33633 23273 16635 43144 39281 37500 54755 52493 26603 62800 FALSE FALSE TRUE 41114.54482 25994.5749 22788.97874 45500.84747 35370.04572 39463.44201 43056.14694 39619.00944 31941.97808 47145.11575 0.872084927 0.551373657 0.483379421 0.965123253 0.750237753 0.837063212 0.913268453 0.840362969 0.677524651 1 15.52482069 -5.265302593 24.9988061 0.845486384 0.627188768 0.375301688 0.12906034 344.7948639 2231166.642 0.035458487 0.054897612 5.43E-06 5.265302593 -0.218297616 EQLEEEEEAKHNLEK ddPTM_HeLa_A486_30min_R1 1 EQLEEEEEAKHNLEK 15 1 P35579 P35579 MYH9 Myosin-9 0 0 109.42 0.00050637 5828600 6215 7414.1 5357.9 3453.3 8830 8130.7 9215.3 8790.4 7144.8 7673.7 FALSE FALSE TRUE 5779.360594 6826.579714 7432.62237 8039.45692 7722.459064 7127.616901 6909.53447 6789.017813 7764.117017 5752.155573 1.004729535 1.18678635 1.292145575 1.39764247 1.342533067 1.239121024 1.201207857 1.180256293 1.349775214 1 12.48988698 -10.0636079 4.637696783 0.999988748 1.247714258 0.319965405 0.106489768 76063745.14 3.247581408 9140.016993 0.02731616 8.64E-11 10.0636079 0.247725511 EQLQPHENGEGNS(ph)ET ddPTM_HeLa_A485_30min_R1 1 EQLQPHENGEGNSET 15 0 P06756-3;P06756-2;P06756 P06756-3 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain 1 0 EQLQPHENGEGNS(0.5)ET(0.5) 249.86 7.59E-42 571100000 381160 463980 307280 325490 307430 425610 456400 408740 334590 704180 TRUE FALSE FALSE 465947.727 518238.4249 420955.659 343270.6945 276821.1897 447894.2815 358886.4116 308495.8741 401739.144 528640.8855 0.881406906 0.980322255 0.796297961 0.649345716 0.523646955 0.847256226 0.678885083 0.58356416 0.759947168 1 19.01192848 -4.966268351 4.282552569 0.699251431 0.928150514 0.281905567 0.129798365 0.218324369 9.110753193 0.033413606 0.071333035 1.08E-05 4.966268351 0.228899083 EQLQPHENGEGNS(ph)ET ddPTM_HeLa_A486_30min_R1 4 EQLQPHENGEGNSET 15 0 P06756-3;P06756-2;P06756 P06756-3 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain 1 0 EQLQPHENGEGNS(0.957)ET(0.043);EQLQPHENGEGNS(0.996)ET(0.004);EQLQPHENGEGNS(0.979)ET(0.021);EQLQPHENGEGNS(0.81)ET(0.19) ;;; 187.39 5.80E-18 1014770000 1140620 1246320 1169260 362345 1517510 1275440 1100920 1093520 1391420 1573920 TRUE FALSE FALSE 1060668.428 1147557.064 1622028.786 843557.4719 1327169.746 1118089.181 825458.1717 844549.3674 1512029.406 1179800.188 0.899023783 0.972670691 1.37483347 0.715000286 1.124910607 0.947693679 0.699659299 0.715841018 1.281597869 1 20.17011111 -6.51912633 24.88775888 0.889606344 1.019721271 0.030578682 0.218843408 446.8955023 2964061.601 0.081305197 0.06443254 3.03E-07 6.51912633 0.130114928 EQLRQEQALLEEIER ddPTM_HeLa_A485_30min_R1 1 EQLRQEQALLEEIER 15 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 167.28 6.53E-10 0 8989.4 15026 17339 8173.2 20816 15263 18286 22734 14249 15886 FALSE FALSE TRUE 10989.06102 16783.15999 23753.41764 8619.68122 18743.48595 16062.14708 14379.04672 17158.45085 17108.6436 11925.91256 0.921444037 1.407285179 1.991748432 0.722769111 1.571660521 1.346827507 1.205697815 1.438753703 1.434577313 1 13.54181204 -10.44924238 3.328311145 0.99490676 1.34726568 0.086492044 0.328126267 110368192.4 152674562.3 5291576.697 0.078695374 3.55E-11 10.44924238 0.35235892 EQLSAQELMESGLQIQKS(ph)PEPEVLSTQEDLFDQSNK ddPTM_HeLa_A485_30min_R1 1 EQLSAQELMESGLQIQKSPEPEVLSTQEDLFDQSNK 36 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EQLS(0.193)AQELMES(0.105)GLQIQKS(0.702)PEPEVLSTQEDLFDQSNK 81.892 0.00017181 70983000 16951 15241 11453 36151 26779 22589 41489 31873 19896 53404 TRUE FALSE FALSE 20721.69147 17023.30237 15689.9413 38125.83759 24112.78873 23771.72511 32624.53622 24056.09678 23888.9447 40091.36563 0.516861702 0.424612684 0.391354623 0.950973782 0.601445931 0.592938772 0.813754675 0.600031862 0.595862584 1 15.29100394 -14 0.056271667 2.340676539 1.55E-16 0.407694257 0.151273671 492.2922253 2.028984949 95.481387 17.7180996 1.00E-14 14 -2.340676539 EQLSAQELMESGLQIQKS(ph)PEPEVLSTQEDLFDQSNK ddPTM_HeLa_A486_30min_R1 1 EQLSAQELMESGLQIQKSPEPEVLSTQEDLFDQSNK 36 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EQLSAQELMESGLQIQKS(1)PEPEVLSTQEDLFDQSNK 175.31 3.39E-15 113410000 29028 22344 12212 22773 23813 35533 45771 41370 20058 53701 TRUE FALSE FALSE 26993.2871 20573.38006 16940.81345 53016.69488 20826.15149 31149.29973 34318.61168 31950.9541 21796.64359 40253.92007 0.670575364 0.511090101 0.420848787 1.317056694 0.517369525 0.773820281 0.852553282 0.79373522 0.541478782 1 15.29684166 -2.281066912 0.090807402 1.05768917 2.82E-98 0.102903417 0.244311156 304.8243366 2.613658038 5.089620955 40.61095467 0.005235198 2.281066912 -1.05768917 EQMMNSSISS(ph)GSGSLR ddPTM_HeLa_A485_30min_R1 1 EQMMNSSISSGSGSLR 16 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 EQMMNSSIS(0.03)S(0.47)GS(0.47)GS(0.03)LR 145.43 7.67E-08 136400000 119660 157030 148700 135550 160910 164040 184570 198970 142340 193680 TRUE FALSE FALSE 146277.9542 175393.2925 203710.3179 142954.7533 144889.2354 172628.8807 145135.1117 150172.2955 170906.3324 145399.1404 1.006044147 1.206288373 1.401042106 0.983188435 0.996493067 1.1872758 0.998184111 1.032827946 1.175428767 1 17.14965921 -5.30292609 24.9999682 1.055623972 1.204641714 0.276543941 0.111963689 643.549395 387802.6836 0.031811378 0.047184246 4.98E-06 5.30292609 0.149017742 EQMMNSSISSGSGS(ph)LR ddPTM_HeLa_A485_30min_R1 1 EQMMNSSISSGSGSLR 16 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 EQMMNSSISS(0.002)GS(0.038)GS(0.96)LR 126.84 1.58E-06 0 134210 127280 143970 163980 186270 164970 228050 203280 163800 260760 TRUE FALSE FALSE 164064.5515 142164.2888 197230.4941 172937.8122 167724.3048 173607.5741 179325.2545 153425.2613 196673.1575 195757.3309 0.838101698 0.726227151 1.007525456 0.883429557 0.856797056 0.886850946 0.916058947 0.783752315 1.004678377 1 17.57870681 -13.99999988 0.051454371 1.492755824 0.635908594 0.246589993 0.078456261 829.3228056 3.143500473 55.40443358 11.84612602 1.00E-14 13.99999988 -0.85684723 EQMMNSSISSGSGS(ph)LR ddPTM_HeLa_A486_30min_R1 2 EQMMNSSISSGSGSLR 16 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 EQMMNSSISS(0.005)GS(0.026)GS(0.969)LR;EQMMNSSISS(0.008)GS(0.02)GS(0.972)LR ; 101.67 0.00026058 0 135092 230729 239300 39206 296680 182236 216450 238770 167242 146458 TRUE FALSE FALSE 125622.7484 212445.1937 331963.3687 91273.54936 259467.628 159753.5752 162291.9206 184407.2833 181738.6712 109783.9635 1.1442723 1.935120458 3.023787428 0.831392368 2.363438335 1.455163123 1.4782844 1.679728782 1.655420932 1 16.74430781 -9.009959055 0.303682744 0.791394028 1.899644517 0.132358418 0.581247685 11.23503983 1.542998748 3.568033247 0.700884191 9.77E-10 9.009959055 1.108250489 EQNS(ph)LSLLEAR ddPTM_HeLa_A485_30min_R1 1 EQNSLSLLEAR 11 0 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 EQNS(0.765)LS(0.235)LLEAR 98.592 0.00079503 0 60845 61311 72149 54947 89640 65443 77951 85813 73384 82323 TRUE FALSE FALSE 74379.76034 68480.78812 98839.91747 57948.61548 80715.12685 68869.49429 61296.13205 64767.2272 88111.49568 61801.39114 1.203528901 1.108078424 1.599315414 0.937658755 1.306040614 1.114368027 0.991824471 1.047989794 1.425720264 1 15.91535169 -5.300326089 24.99997827 1.122126246 1.284085588 0.175889391 0.182841397 1021.266378 656562.4912 0.050435907 0.074810051 5.01E-06 5.300326089 0.161959342 EQNS(ph)LSLLEAR ddPTM_HeLa_A486_30min_R1 1 EQNSLSLLEAR 11 0 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 EQNS(0.997)LS(0.003)LLEAR 98.531 0.0016014 20003000 31928 39028 33735 10216 40932 35021 33006 40074 31014 35175 TRUE FALSE FALSE 29690.01208 35935.27914 46798.09545 23783.36429 35797.92688 30700.46509 24747.5497 30950.02501 33702.31849 26366.95105 1.126031297 1.362890957 1.774877018 0.902014201 1.357681698 1.164354006 0.938582154 1.173818882 1.278203097 1 14.68644313 -5.278887338 24.99925899 1.128266635 1.415428946 0.327931167 0.199455884 984.245015 1410214.045 0.05630656 0.083731643 5.26E-06 5.278887338 0.287162311 EQNSALPT(ph)SSQDEELMEVVEK ddPTM_HeLa_A485_30min_R1 3 EQNSALPTSSQDEELMEVVEK 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EQNSALPT(0.486)S(0.312)S(0.202)QDEELMEVVEK;EQNS(0.002)ALPT(0.441)S(0.321)S(0.236)QDEELMEVVEK;EQNS(0.001)ALPT(0.41)S(0.295)S(0.295)QDEELMEVVEK ;; 116.39 5.70E-05 132047000 153279 157593 133762 178868 185173 176998 223425 243668 143908 243064 TRUE FALSE FALSE 187375.3847 176022.1305 183246.1301 188639.1059 166736.5259 186265.3416 175688.4235 183908.0409 172789.0156 182472.6181 1.026868506 0.964649559 1.004239058 1.033794045 0.913761899 1.020785165 0.962820753 1.007866511 0.946931202 1 17.47732046 EQNSALPT(ph)SSQDEELMEVVEK ddPTM_HeLa_A486_30min_R1 1 EQNSALPTSSQDEELMEVVEK 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EQNS(0.037)ALPT(0.429)S(0.309)S(0.225)QDEELMEVVEK 72.568 0.0067302 36693000 44986 41771 27648 17915 42815 46933 51308 52489 34881 49827 TRUE FALSE FALSE 41832.71371 38460.91383 38354.04604 41707.02537 37444.74347 41142.88364 38470.19572 40538.40053 37904.51316 37349.99488 1.120019262 1.029743483 1.02688223 1.116654112 1.002536776 1.101549914 1.029991994 1.085365625 1.014846542 1 15.18882042 -7.902090659 5.653895956 1.000556958 1.061387101 0.251946853 0.039170614 0.258816738 11.29784886 0.034693017 0.009025143 1.25E-08 7.902090659 0.060830142 EQNSALPTS(ph)SQDEELMEVVEK ddPTM_HeLa_A485_30min_R1 1 EQNSALPTSSQDEELMEVVEK 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EQNSALPT(0.111)S(0.552)S(0.337)QDEELMEVVEK 139.11 1.78E-07 76853000 86460 93673 71388 88454 103930 98579 122250 129480 86743 127750 TRUE FALSE FALSE 105692.7287 104627.2425 97797.3919 93286.01804 93582.36428 103740.444 96130.28881 97724.82698 104151.5244 95904.27606 1.10206482 1.090954927 1.01973964 0.972699257 0.975789278 1.081708223 1.002356649 1.018983 1.085994585 1 16.54930752 -4.744930786 5.433358414 1.018494718 1.098305056 0.419731355 0.036195761 0.159751334 13.88067855 0.009676245 0.024605643 1.80E-05 4.744930786 0.079810338 EQNSALPTS(ph)SQDEELMEVVEK ddPTM_HeLa_A486_30min_R1 3 EQNSALPTSSQDEELMEVVEK 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EQNS(0.003)ALPT(0.099)S(0.528)S(0.371)QDEELMEVVEK;EQNSALPT(0.093)S(0.548)S(0.359)QDEELMEVVEK;EQNS(0.001)ALPT(0.09)S(0.454)S(0.454)QDEELMEVVEK ;; 119.38 1.85E-05 178053000 213843 212510 120775 77291 188897 204694 241839 232775 169393 255165 TRUE FALSE FALSE 198853.71 195669.9337 167542.3145 179937.3541 165203.7769 179440.9355 181328.3243 179777.2139 184076.1216 191270.0232 1.039649113 1.02300366 0.875946537 0.940750417 0.86372017 0.938155036 0.948022703 0.939913171 0.962388766 1 17.54525126 -4.661473367 7.248802338 0.930044735 1.034665037 0.522410335 0.037331091 0.155985405 9.775486495 0.009304189 0.024898702 2.18E-05 4.661473367 0.104620302 EQNSLS(ph)LLEAR ddPTM_HeLa_A486_30min_R1 1 EQNSLSLLEAR 11 0 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 EQNS(0.063)LS(0.937)LLEAR 81.632 0.0037867 0 46046 60362 50676 18876 66519 62021 66439 67287 49583 61079 TRUE FALSE FALSE 42818.41318 55578.69529 70299.10435 43944.28194 58175.56675 54369.4796 49815.25948 51967.21896 53880.89436 45784.42084 0.935217971 1.213921554 1.535437231 0.959808623 1.270641098 1.187510481 1.088039524 1.135041527 1.176839051 1 15.48256915 -6.715357149 7.953598672 1.111302239 1.195138298 0.055944946 0.162059295 0.816215751 122.7782836 0.062465746 0.047957777 1.93E-07 6.715357149 0.083836059 EQNVLHMLHQILTPFLLR ddPTM_HeLa_A485_30min_R1 2 EQNVLHMLHQILTPFLLR 18 0 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 A0A087WSW7 HELLS Lymphoid-specific helicase 0 0 ; ; 114.55 2.66E-05 18044300 12274 11639.4 11620.3 10159.5 11133.5 8084.9 13586.4 12991.9 7644.6 17700 FALSE FALSE TRUE 15004.30896 13000.52658 15919.13253 10714.48776 10025.00965 8508.212862 10683.55465 9805.616154 9178.8011 13287.71574 1.129186479 0.978386867 1.198033796 0.806345347 0.754456962 0.640306658 0.804017399 0.73794596 0.690773439 1 13.6978055 -5.365622752 5.333591828 0.755953133 1.088154656 0.674615214 0.103206143 0.12011626 5.019589587 0.027624281 0.041475561 4.31E-06 5.365622752 0.332201523 EQNVLHMLHQILTPFLLR ddPTM_HeLa_A486_30min_R1 2 EQNVLHMLHQILTPFLLR 18 0 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 A0A087WSW7 HELLS Lymphoid-specific helicase 0 0 ; ; 112.82 3.58E-05 9569000 6188.7 6385.7 4963.1 3956.7 7032.2 5106.2 6929.2 6631.3 4437.2 7230.5 FALSE FALSE TRUE 5754.904088 5879.673876 6884.945236 9211.397561 6150.155903 4476.24896 5195.44087 5121.49775 4821.820069 5419.935737 1.061803012 1.08482354 1.27030016 1.699539996 1.134728565 0.825885984 0.958579792 0.944936988 0.889645247 1 12.40406003 -6.005624014 24.95583765 0.92895971 1.283674508 0.502319583 0.167403946 225.2583806 999561.1847 0.057104171 0.062803471 9.87E-07 6.005624014 0.354714798 EQNVLHMLHQILTPFLLRR ddPTM_HeLa_A485_30min_R1 1 EQNVLHMLHQILTPFLLRR 19 1 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 A0A087WSW7 HELLS Lymphoid-specific helicase 0 0 110.77 3.32E-05 3022300 5375.8 6892.7 4522.5 4840.1 4832.2 5358.6 8477.6 11368 4990.1 9937.6 FALSE FALSE TRUE 6571.628164 7698.741306 6195.560947 5104.502407 4351.089201 5639.16801 6666.291504 8579.980176 5991.567298 7460.339208 0.88087525 1.031955933 0.830466387 0.684218541 0.583229406 0.755886274 0.893564129 1.150079096 0.803122637 1 12.86502551 -10.25335545 7.831497118 1.000000219 0.846164492 0.083023253 0.153604898 6.56E-07 6.25E-08 0.166448822 0.040369712 5.58E-11 10.25335545 -0.153835727 EQPGEEYS(ph)EEEESVLK ddPTM_HeLa_A485_30min_R1 1 EQPGEEYSEEEESVLK 16 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 0 EQPGEEYS(0.999)EEEES(0.001)VLK 143.99 6.99E-08 0 22308 22241 9841.2 29622 28527 23552 34872 25531 22357 32923 TRUE FALSE FALSE 27270.33764 24841.89148 13481.86941 31240.17485 25686.75172 24785.1463 27421.31232 19269.48222 26843.84483 24715.902 1.103351908 1.005097507 0.545473493 1.263970655 1.039280367 1.002801609 1.109460311 0.779639044 1.086096102 1 14.59315194 -4.301878393 5.631327212 0.975571068 1.104889764 0.037791446 0.185097209 0.560586561 48.19210942 0.045561244 0.211739422 4.99E-05 4.301878393 0.129318696 EQQEAIEHIDEVQNEIDRLNEQAS(ph)EEILK ddPTM_HeLa_A485_30min_R1 2 EQQEAIEHIDEVQNEIDRLNEQASEEILK 29 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK ; 237.88 3.64E-50 257462000 51426 54369 51505 65594 56048 63048 73340 67889 49791 76275 TRUE FALSE FALSE 62865.53628 60726.9816 70558.8428 69177.23413 50467.66432 66349.09579 57670.30987 51239.1163 59783.59699 57261.04624 1.097876138 1.060528677 1.232231114 1.208102867 0.881361198 1.1587126 1.007147331 0.894833743 1.044053522 1 15.80526641 -5.74632969 24.99999999 1.000950923 1.14921259 0.430695212 0.085562204 249.5438909 412885.2072 0.025919257 0.033328558 1.79E-06 5.74632969 0.148261666 EQQEAIEHIDEVQNEIDRLNEQAS(ph)EEILK ddPTM_HeLa_A486_30min_R1 4 EQQEAIEHIDEVQNEIDRLNEQASEEILK 29 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK;EQQEAIEHIDEVQNEIDRLNEQAS(1)EEILK ;;; 327.78 7.67E-127 436385000 203320.6 195558.3 105353.8 75797.9 161298.2 197106.6 229751.3 215728.2 155750.8 281711.2 TRUE FALSE FALSE 189068.8759 180061.5481 146149.6128 176461.3418 141066.6757 172789.5917 172265.0947 166611.5982 169251.4047 211168.8819 0.8953444 0.852689783 0.692098246 0.83564084 0.668027763 0.818253098 0.815769318 0.788996924 0.80149785 1 17.68803773 -9.424604145 0.933355011 1.007038204 0.792017128 0.464591761 0.0654747 21.43220026 12.32094411 0.641382279 0.020666687 3.76E-10 9.424604145 -0.215021076 EQQSWVISPPQPS(ph)PQK ddPTM_HeLa_A485_30min_R1 1 EQQSWVISPPQPSPQK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EQQSWVISPPQPS(1)PQK 156.67 1.72E-08 63999000 149790 135290 106050 180810 174760 153800 216510 213290 124350 224710 TRUE FALSE FALSE 183110.2687 151110.9886 145282.3081 190687.1925 157360.2808 161852.7302 170250.8698 160980.2931 149305.9044 168693.9325 1.085458535 0.895770147 0.861218338 1.130373746 0.932815297 0.959446068 1.009229362 0.954274352 0.885069796 1 17.36404856 -9.420424959 5.445436943 0.999999986 0.967179243 0.013309219 0.081772124 10782270.4 2072552.426 0.079069774 0.019302113 3.80E-10 9.420424959 -0.032820743 EQQSWVISPPQPS(ph)PQK ddPTM_HeLa_A486_30min_R1 1 EQQSWVISPPQPSPQK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EQQSWVISPPQPS(1)PQK 121.27 4.84E-05 51055000 153580 136260 111640 66367 158790 148960 175840 169960 117960 190960 TRUE FALSE FALSE 142814.8351 125462.2613 154869.9978 154505.73 138873.0775 130582.8297 131842.9722 131263.8182 128184.8678 143142.3731 0.997711803 0.876485828 1.081929791 1.079384998 0.970174481 0.912258383 0.921061803 0.917015803 0.895506097 1 17.12709128 -6.003338825 24.73192684 0.925446477 1.007157023 0.288493841 0.058898983 162.8071027 1205989.1 0.019471939 0.021637681 9.92E-07 6.003338825 0.081710546 EQS(ph)PEKPR ddPTM_HeLa_A485_30min_R1 2 EQSPEKPR 8 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 EQS(1)PEKPR;EQS(1)PEKPR ; 97.456 0.0012988 486640000 1052580 1029800 489680 1316450 500530 875880 844880 1043390 691790 1360650 TRUE FALSE FALSE 1286722.79 1150226.152 670833.0093 1388364.33 450695.4757 921739.7224 664364.486 787496.9665 830625.9075 1021464.996 1.259683685 1.126055378 0.65673617 1.359189337 0.441224592 0.902370347 0.650403576 0.770948559 0.813171191 1 19.96220834 -3.636053739 0.671364045 0.784144318 2.13688352 0.266233015 0.235750353 8.197897347 1.535877787 0.094804868 10.22748872 0.000231178 3.636053739 1.352739202 EQS(ph)PEKPR ddPTM_HeLa_A486_30min_R1 1 EQSPEKPR 8 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 EQS(1)PEKPR 64.439 0.012115 125020000 454830 193260 201170 141500 151120 574750 261580 210950 416220 682630 TRUE FALSE FALSE 422948.7657 177945.3738 279068.4115 329419.151 132165.1205 503843.1886 196129.9173 162921.29 452298.2847 511695.0048 0.826564187 0.347756715 0.545380371 0.643780275 0.258288862 0.984655281 0.383294571 0.318395311 0.883921634 1 18.96492462 -7.917579703 6.173158726 0.99746135 0.537247139 0.356244105 0.219404091 0.193746865 10.49062898 0.201155474 0.052207865 1.21E-08 7.917579703 -0.460214211 EQS(ph)PSQHGKDPASLLASELVQLHMQLEEK ddPTM_HeLa_A485_30min_R1 1 EQSPSQHGKDPASLLASELVQLHMQLEEK 29 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 EQS(0.5)PS(0.5)QHGKDPASLLASELVQLHMQLEEK 176.01 5.89E-15 227610000 88416 93502 50763 63457 115020 106280 148880 175240 83650 131420 TRUE FALSE FALSE 108083.8342 104436.2455 69542.34612 66923.49523 103568.2049 111844.6565 117070.5718 132262.1152 100437.7877 98659.41261 1.095524809 1.058553287 0.704872898 0.678328539 1.049754932 1.133644054 1.186613306 1.340592973 1.018025397 1 16.59016908 -5.991111341 24.04950417 1.152624054 0.881459186 0.379966453 0.150960231 132.7973913 359297.2365 0.050381176 0.057031527 1.02E-06 5.991111341 -0.271164868 EQS(ph)PSQHGKDPASLLASELVQLHMQLEEK ddPTM_HeLa_A486_30min_R1 3 EQSPSQHGKDPASLLASELVQLHMQLEEK 29 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 EQS(0.598)PS(0.399)QHGKDPAS(0.003)LLASELVQLHMQLEEK;EQS(0.853)PS(0.142)QHGKDPAS(0.004)LLAS(0.001)ELVQLHMQLEEK;EQS(0.702)PS(0.298)QHGKDPASLLASELVQLHMQLEEK ;; 188.67 6.73E-21 175407000 156315 131931 61871 20363.5 123206 133951 167319 140419 102856 102956 TRUE FALSE FALSE 145358.1257 121476.3071 85829.10816 47407.25711 107752.3546 117425.4875 125454.0165 108448.659 111771.6409 77175.14747 1.883483615 1.574034013 1.112134035 0.614281393 1.396205361 1.52154536 1.625575339 1.405227752 1.44828542 1 16.23584871 -5.981668146 24.99754173 1.44169224 1.265528553 0.011380428 0.340786076 884.1369425 1205614.096 0.11391943 0.129150203 1.04E-06 5.981668146 -0.176163687 EQSEVSVS(ph)PR ddPTM_HeLa_A485_30min_R1 6 EQSEVSVSPR 10 0 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVS(0.001)VS(0.999)PR ;;;;; 161.48 5.71E-07 22893950000 6524640 8671370 9262720 6928580 10441490 8384380 9694120 10701970 8143770 9662840 TRUE FALSE FALSE 7976023.658 9685411.291 12689385.58 7307070.781 9401898.593 8823373.172 7622892.068 8077295.077 9778149.94 7254071.819 1.099523668 1.335168927 1.749277633 1.007306098 1.296085678 1.216333859 1.050843203 1.113484299 1.347953285 1 22.7903596 -5.31447084 24.99965868 1.157198636 1.388711884 0.275158747 0.183324927 441.5710996 208160.8319 0.05162543 0.076572925 4.85E-06 5.31447084 0.231513247 EQSEVSVS(ph)PR ddPTM_HeLa_A486_30min_R1 6 EQSEVSVSPR 10 0 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVSVS(1)PR ;;;;; 181.06 1.54E-09 24763790000 6712180 8478050 6974300 2288975 9236630 7083830 8320800 8349120 6879460 7506900 TRUE FALSE FALSE 6241690.844 7806218.441 9674935.738 5328849.478 8078085.737 6209899.078 6238847.832 6448207.636 7475777.132 5627123.378 1.109215211 1.387248496 1.719339543 0.946993538 1.435562221 1.103565474 1.108709977 1.145915453 1.328525541 1 22.42396617 -5.276414312 24.99414483 1.166732089 1.403465869 0.264274849 0.192079156 1105.52059 1845183.972 0.053202062 0.079261996 5.29E-06 5.276414312 0.23673378 EQSGSSNGSES(ph)SPANENGDR ddPTM_HeLa_A486_30min_R1 1 EQSGSSNGSESSPANENGDR 20 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 EQS(0.023)GS(0.023)S(0.023)NGS(0.106)ES(0.51)S(0.316)PANENGDR 55.864 0.02702 83971000 56903 71241 78170 20811 85293 75021 76980 79031 70085 73864 TRUE FALSE FALSE 52914.39355 65595.6037 108439.5175 48449.05973 74594.75661 65765.67178 57718.78979 61037.36653 76160.02423 55367.97363 0.955685933 1.184721047 1.958524222 0.875037618 1.34725459 1.187792644 1.042458049 1.102394806 1.375524861 1 15.7567641 EQSGSSNGSESS(ph)PANENGDR ddPTM_HeLa_A485_30min_R1 2 EQSGSSNGSESSPANENGDR 20 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 EQSGSSNGS(0.001)ES(0.034)S(0.964)PANENGDR;EQSGSSNGS(0.005)ES(0.214)S(0.782)PANENGDR ; 150.98 1.29E-09 176126000 238599 311810 302650 237773 349850 283350 300750 280169 282580 308120 TRUE FALSE FALSE 291674.5244 348273.4671 414612.8293 250761.9369 315017.7056 298185.7679 236492.3056 211457.1135 339291.214 231311.3545 1.260960686 1.505647952 1.792444777 1.084088316 1.361877398 1.289109946 1.02239817 0.914166595 1.466816079 1 17.81947656 -5.892387842 1.093014754 1.111498001 1.488172674 0.304563785 0.216096851 0.603025182 1.538410041 0.099707703 0.130062296 1.28E-06 5.892387842 0.376674674 EQSGSSNGSESS(ph)PANENGDR ddPTM_HeLa_A486_30min_R1 1 EQSGSSNGSESSPANENGDR 20 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 EQSGSSNGS(0.013)ES(0.044)S(0.943)PANENGDR 326.45 1.43E-104 114140000 110130 140810 131880 32468 145020 119370 115960 127250 115890 112650 TRUE FALSE FALSE 102410.4557 129651.7028 182947.4679 75587.14484 126830.2393 104643.3431 86945.5815 98277.95285 125935.4385 84441.70677 1.212794715 1.535398889 2.166553411 0.895139946 1.501985739 1.23923766 1.029652109 1.163855595 1.49138907 1 16.36566812 -5.282518728 24.99592484 1.204104667 1.627964158 0.341965443 0.285076141 930.833471 1103781.706 0.080004148 0.118798526 5.22E-06 5.282518728 0.423859491 EQSPS(ph)QHGKDPASLLASELVQLHMQLEEK ddPTM_HeLa_A486_30min_R1 1 EQSPSQHGKDPASLLASELVQLHMQLEEK 29 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 EQS(0.2)PS(0.8)QHGKDPASLLASELVQLHMQLEEK 207.67 4.67E-29 94880000 112560 95976 50867 14850 95902 91978 124340 110230 86832 78416 TRUE FALSE FALSE 104670.1253 88370.51222 70564.06467 34571.55048 83873.07691 80630.68952 93228.81687 85133.0353 94358.66767 58780.1232 1.780706123 1.503408081 1.200474937 0.588150358 1.426895221 1.371733932 1.58606025 1.448330331 1.605281897 1 15.84304076 -5.950184993 24.99998761 1.437077751 1.24607241 0.035782866 0.321390298 335.8060628 168524.6557 0.105379784 0.11948942 1.12E-06 5.950184993 -0.191005342 EQSSDLTPSGDVS(ph)PVKPLSR ddPTM_HeLa_A485_30min_R1 3 EQSSDLTPSGDVSPVKPLSR 20 1 Q8WYQ5-3;Q8WYQ5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 EQSSDLT(0.003)PS(0.003)GDVS(0.99)PVKPLS(0.003)R;EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR ;; 237.38 2.19E-46 4880110000 1058485 1124323 838400 1205087 1314375 1191336 1599880 1491740 962633 1699540 TRUE FALSE FALSE 1293941.337 1255802.795 1148559.049 1270917.851 1183511.21 1253712.511 1258052.568 1125888.426 1155824.613 1275875.956 1.014159198 0.984267153 0.900212159 0.996113961 0.927606798 0.98262884 0.98603047 0.882443486 0.905906729 1 20.28305664 -7.245648643 24.86688993 0.920631325 0.967841717 0.151732487 0.04234505 1138.3401 1792636.521 0.019493286 0.011204885 5.68E-08 7.245648643 0.047210392 EQSSDLTPSGDVS(ph)PVKPLSR ddPTM_HeLa_A486_30min_R1 3 EQSSDLTPSGDVSPVKPLSR 20 1 Q8WYQ5-3;Q8WYQ5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPS(0.009)GDVS(0.991)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR ;; 237.38 2.19E-46 2870760000 2226290 2091690 1248250 944610 1983840 2284840 2592660 2586550 1766590 2796250 TRUE FALSE FALSE 2070238.568 1925936.867 1731605.829 2199099.818 1735008.289 2002959.671 1943949.046 1997649.029 1919719.444 2096050.799 0.987685302 0.918840739 0.826127797 1.049163417 0.827751068 0.95558737 0.927434128 0.953053728 0.915874484 1 20.99924225 -10.75132505 0.413547965 1.058940466 0.925148377 0.098922921 0.063543232 87.94461304 6.615156664 5.190230992 0.036932343 1.77E-11 10.75132505 -0.13379209 EQST(ph)PPKS(ph)PQ ddPTM_HeLa_A485_30min_R1 3 EQSTPPKSPQ 10 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 2 0 EQS(0.002)T(0.998)PPKS(1)PQ;EQS(0.002)T(0.998)PPKS(1)PQ;EQS(0.081)T(0.919)PPKS(1)PQ ;; 123.28 0.0021216 2666400000 3933750 3578840 2711870 6251240 4973660 4141780 6281320 6385860 3328210 7774260 TRUE FALSE FALSE 4808799.116 3997354.206 3715103.563 6592729.412 4478464.947 4358637.196 4939264.668 4819717.822 3996151.219 5836280.057 0.823949343 0.684914735 0.63655334 1.129611559 0.76734922 0.746817691 0.846303574 0.825820176 0.684708612 1 22.47661768 -11.42864346 2.226330157 2.833689347 0.796336917 0.184224843 0.129961297 11021266.21 716511.2077 102506344 0.032687336 3.73E-12 11.42864346 -2.037352429 EQST(ph)PPKS(ph)PQ ddPTM_HeLa_A486_30min_R1 4 EQSTPPKSPQ 10 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 2 0 EQS(0.001)T(0.999)PPKS(1)PQ;EQST(1)PPKS(1)PQ;EQST(1)PPKS(1)PQ;EQST(1)PPKS(1)PQ ;;; 154.36 4.04E-05 4016780000 4471640 4375440 2202580 2585060 3907940 4838020 6247490 5961600 3346500 7122960 TRUE FALSE FALSE 4158201.128 4028714.199 3055477.963 6018150.322 3417769.725 4241154.282 4684301.923 4604273.821 3636577.314 5339324.453 0.778787872 0.754536315 0.572259279 1.127137033 0.640112762 0.794324136 0.877321085 0.862332653 0.681093151 1 22.34822579 -14 0.24716134 2.214252364 0.772390764 0.15395174 0.145500716 345.6842117 3.437740157 212.4120956 0.210233103 1.00E-14 14 -1.4418616 EQST(ph)PPKSPQ ddPTM_HeLa_A486_30min_R1 1 EQSTPPKSPQ 10 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 EQS(0.083)T(0.916)PPKS(0.001)PQ 118.77 0.00073622 281320000 299600 312130 183360 134430 302280 323980 393720 384660 237960 392250 TRUE FALSE FALSE 278599.5871 287395.682 254361.9026 312959.8337 264365.2238 284010.6416 295207.0917 297081.3151 258586.5644 294028.0469 0.947527252 0.977443088 0.865094011 1.06438769 0.899115668 0.965930443 1.004009974 1.010384275 0.879462239 1 18.16559425 -5.238808498 24.99940089 0.972887988 0.93476364 0.112157283 0.057043184 2128.694555 2351479.242 0.014904464 0.025796285 5.77E-06 5.238808498 -0.038124348 EQTFSGGTS(ph)QDTK ddPTM_HeLa_A486_30min_R1 2 EQTFSGGTSQDTK 13 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EQTFSGGT(0.001)S(0.999)QDTK;EQTFS(0.001)GGT(0.04)S(0.959)QDTK ; 280.5 1.24E-67 361350000 687340 681920 349580 286530 638340 789000 848160 838920 588960 1101100 TRUE FALSE FALSE 639161.0154 627882.1757 484946.7381 667056.3204 558273.4449 691661.202 635941.3971 647916.2295 640011.527 825377.393 0.774386385 0.760721315 0.587545458 0.808183415 0.676385675 0.837993877 0.770485601 0.784993913 0.775416836 1 19.6546944 -13.61737702 0.188558728 1.922511944 0.702764203 0.586471766 0.064567632 79.54802725 0.884846414 27.54027218 0.177421712 2.41E-14 13.61737702 -1.219747742 EQTLHT(ph)PVMMQTPQLTSTIMR ddPTM_HeLa_A485_30min_R1 2 EQTLHTPVMMQTPQLTSTIMR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 EQTLHT(1)PVMMQTPQLTSTIMR;EQT(0.002)LHT(0.998)PVMMQTPQLTSTIMR ; 209.68 9.41E-27 799300000 282800 307130 317470 273210 333030 279980 330530 317480 276040 317840 TRUE FALSE FALSE 345707.8844 343046.1818 434915.364 288134.7705 299872.3639 294639.3199 259909.5653 239617.5322 331438.696 238608.3374 1.448850816 1.437695705 1.822716544 1.207563716 1.256755598 1.234824076 1.089272773 1.004229504 1.389049099 1 17.86428493 -5.394944409 7.532462489 1.168838375 1.555576884 0.606596289 0.148113836 0.182510658 10.32909121 0.041469734 0.061610827 4.03E-06 5.394944409 0.386738509 EQTLHT(ph)PVMMQTPQLTSTIMR ddPTM_HeLa_A486_30min_R1 2 EQTLHTPVMMQTPQLTSTIMR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 EQTLHT(1)PVMMQTPQLTSTIMR;EQTLHT(1)PVMMQTPQLTSTIMR ; 224.41 1.39E-35 738810000 314130 339030 246450 87180 356060 257510 335870 287140 320430 324840 TRUE FALSE FALSE 292111.1092 312164.0281 341882.0402 202959.4458 311399.6347 225741.0344 251831.7735 221764.4902 348205.1304 243497.9496 1.199645047 1.28199859 1.404044842 0.833516036 1.278859371 0.927075709 1.034225438 0.910744795 1.430012577 1 17.8935501 -5.243023873 24.99195678 1.058091947 1.293906399 0.279537946 0.173630585 1058.405724 1436376.69 0.044665614 0.077176273 5.71E-06 5.243023873 0.235814453 EQTLS(ph)PTITSGLHNIAR ddPTM_HeLa_A485_30min_R1 5 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQTLS(0.526)PT(0.472)IT(0.002)SGLHNIAR;EQTLS(0.841)PT(0.155)IT(0.005)SGLHNIAR;EQT(0.005)LS(0.897)PT(0.098)IT(0.001)SGLHNIAR;EQTLS(0.824)PT(0.175)IT(0.001)SGLHNIAR;EQTLS(0.455)PT(0.455)IT(0.087)S(0.002)GLHNIAR ;;;; 255.2 1.55E-51 9505860000 1299350 1758980 1909320 978171 2329910 1713990 1986250 2289560 1707800 1686920 TRUE FALSE FALSE 1588385.925 1964677.41 2615656.921 1031606.005 2097935.98 1803731.866 1561871.461 1728041.82 2050539.795 1266401.889 1.25425107 1.551385406 2.065424052 0.814596072 1.656611536 1.424296569 1.233314222 1.364528776 1.619185673 1 20.27230388 -12.19181212 0.287811583 2.19E-12 1.474470797 0.147161776 0.310868013 149.7059857 3.666909387 91.18921093 0.341569702 6.43E-13 12.19181212 1.474470797 EQTLS(ph)PTITSGLHNIAR ddPTM_HeLa_A486_30min_R1 6 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQT(0.021)LS(0.845)PT(0.131)IT(0.003)SGLHNIAR;EQTLS(0.869)PT(0.128)IT(0.003)SGLHNIAR;EQTLS(0.911)PT(0.087)IT(0.002)SGLHNIAR;EQTLS(0.963)PT(0.03)IT(0.007)SGLHNIAR;EQT(0.003)LS(0.887)PT(0.109)IT(0.001)SGLHNIAR;EQT(0.006)LS(0.902)PT(0.091)IT(0.001)SGLHNIAR ;;;;; 271.66 1.99E-59 10216060000 2896190 3183690 2891520 339166 3902820 2597130 2999860 2987300 2802860 2305760 TRUE FALSE FALSE 2693182.037 2931402.81 4011193.982 789595.5885 3413291.923 2276722.506 2249263.299 2307157.002 3045814.162 1728382.688 1.558209334 1.696038053 2.320778847 0.456840718 1.974847322 1.317256023 1.301368797 1.334864679 1.762233667 1 20.72099125 -1.000000011 0.040598982 1.06E-12 3.920096369 0.104639626 0.467438117 1776.674764 5.502135734 144.3251238 476.4569252 0.099999997 1.000000011 3.920096369 EQTLSPT(ph)ITSGLHNIAR ddPTM_HeLa_A485_30min_R1 1 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQT(0.003)LS(0.119)PT(0.825)IT(0.052)S(0.002)GLHNIAR 204.12 4.77E-25 3552800000 195780 301400 323060 148250 343430 309270 347240 379100 241560 275920 TRUE FALSE FALSE 239330.5856 336646.1082 442573.3376 156348.5221 309236.9033 325462.899 273049.3373 286125.1306 290038.8763 207138.2219 1.155414888 1.625224476 2.136608751 0.754802859 1.492901216 1.571235361 1.318198712 1.381324644 1.400219011 1 17.66023426 -12.46909955 0.198952556 7.67E-09 1.519863678 0.131663346 0.33230729 147.403057 2.518763713 61.11249698 0.856825377 3.40E-13 12.46909955 1.51986367 EQTLSPTIT(ph)SGLHNIAR ddPTM_HeLa_A485_30min_R1 1 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQT(0.01)LS(0.394)PT(0.057)IT(0.537)S(0.002)GLHNIAR 161.68 1.03E-11 538520000 113200 173770 143730 89049 190240 153350 185940 194480 137360 140120 TRUE FALSE FALSE 138380.9495 194090.8899 196901.7081 93913.52139 171299.0376 161379.1689 146212.4 146783.4751 164926.8921 105190.6627 1.315525028 1.845134206 1.871855382 0.892793324 1.628462386 1.534158686 1.389975082 1.395404034 1.567885284 1 16.68264712 -12.25708578 0.207270027 1.92E-11 1.583194572 0.233210847 0.266211102 97.685596 1.857953063 43.33940061 0.630230214 5.53E-13 12.25708578 1.583194572 EQTQANLES(ph)DS(ph)S(ph)HSK ddPTM_HeLa_A485_30min_R1 1 EQTQANLESDSSHSK 15 0 F8W9S8;Q8NA19-2;Q8NA19 F8W9S8 L3MBTL4 Lethal(3)malignant brain tumor-like protein 4 3 0 EQT(0.002)QANLES(0.998)DS(0.699)S(0.699)HS(0.602)K 55.213 0.0041834 0 174890 166550 141900 198740 244720 194970 274670 252850 155710 276070 TRUE FALSE FALSE 213793.6771 186026.5737 194394.715 209596.663 220354.8175 205178.3277 215984.5107 190838.141 186959.5687 207250.8297 1.031569704 0.897591455 0.937968332 1.011318812 1.063227674 0.990000031 1.042140632 0.920807609 0.902093222 1 17.66101835 -10.58456628 3.173548397 1.001051035 0.978035499 0.013783605 0.057098947 11079320.13 19323714.35 65911.14602 0.014667013 2.60E-11 10.58456628 -0.023015536 EQVANSAFVER ddPTM_HeLa_A485_30min_R1 2 EQVANSAFVER 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 272.94 5.87E-46 109919000 55249 67329 74677 53546 87740 74262 83544 90038 70105 73585 FALSE FALSE TRUE 67538.94944 75202.54087 102303.1299 56471.08239 79004.29753 78150.24349 65694.14191 67956.03933 84174.43046 55241.61373 1.222610001 1.361338596 1.851921458 1.022256205 1.430159117 1.414698779 1.189214751 1.230160286 1.52375039 1 15.75346784 -12.6644277 0.251320452 2.45E-12 1.395671672 0.193230332 0.214962834 146.2902974 2.670061797 76.03370591 0.312540839 2.17E-13 12.6644277 1.395671672 EQYGLGPYEAVT(ph)PLTK ddPTM_HeLa_A485_30min_R1 1 EQYGLGPYEAVTPLTK 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EQYGLGPYEAVT(0.992)PLT(0.008)K 89.468 0.0052657 51359000 44278 99212 104910 47886 163630 48853 60184 51780 103210 72114 TRUE FALSE FALSE 54127.48834 110813.9804 143720.5747 50501.89093 147338.4227 51410.86754 47325.19674 39080.87381 123923.3003 54137.30696 0.999818635 2.046906036 2.654741854 0.932848229 2.721569116 0.949638437 0.874169762 0.721884335 2.289055501 1 15.7243355 -6.312737752 24.998272 1.131268385 1.872343707 0.210287763 0.68059847 541.5111577 263882.8231 0.232341102 0.204905778 4.87E-07 6.312737752 0.741075322 EQYVPPRS(ph)PK ddPTM_HeLa_A485_30min_R1 8 EQYVPPRSPK 10 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK ;;;;;;; 102.28 0.00065425 6293510000 3933870 3480320 2777890 5992110 4907460 4437050 6460640 5751340 3561910 7772270 TRUE FALSE FALSE 4808945.81 3887313.149 3805547.109 6319443.796 4418856.051 4669367.077 5080271.485 4340814.847 4276752.665 5834786.127 0.824185447 0.666230615 0.652217069 1.083063485 0.757329567 0.800263622 0.870686838 0.743954406 0.732975052 1 22.47624834 -11.39624807 2.100199221 2.405747031 0.79313129 0.224105764 0.115918199 4271594.867 395092.3778 28563377.91 0.029508294 4.02E-12 11.39624807 -1.612615741 EQYVPPRS(ph)PK ddPTM_HeLa_A486_30min_R1 7 EQYVPPRSPK 10 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK;EQYVPPRS(1)PK ;;;;;; 79.646 0.0038195 5489090000 4402400 4276040 2615878 2465010 4925640 4894690 6193250 5981300 3421360 7197880 TRUE FALSE FALSE 4093814.494 3937191.017 3628816.017 5738667.855 4307820.301 4290832.913 4643633.344 4619488.561 3717926.24 5395483.998 0.758748334 0.72971971 0.67256543 1.063605759 0.79841221 0.795263764 0.860651861 0.856176863 0.689081135 1 22.36332095 -11.66742266 2.247289843 7.09192942 0.807325613 0.237839292 0.105668862 4188880.214 495054.2568 129513184.1 0.027351315 2.15E-12 11.66742266 -6.284603806 ERALS(ph)PGLEESGLGLLAR ddPTM_HeLa_A485_30min_R1 1 ERALSPGLEESGLGLLAR 18 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 ERALS(1)PGLEESGLGLLAR 95.209 0.00026448 17774000 7671 15806 15749 6977.5 27813 19233 24844 39719 14896 11784 TRUE FALSE FALSE 9377.387485 17654.37421 21575.21047 7358.663157 25043.84006 20240.01014 19535.87644 29977.85297 17885.49057 8846.465668 1.060015133 1.995641521 2.438850868 0.831819557 2.830943 2.287920498 2.208325582 3.388681322 2.021766798 1 13.11088547 -5.7837256 24.99926941 2.404891861 1.672390279 0.176263883 0.713842161 379.5041984 425701.6406 0.212790421 0.241461223 1.65E-06 5.7837256 -0.732501582 ERARGDS(ph)EALDEES ddPTM_HeLa_A485_30min_R1 1 ERARGDSEALDEES 14 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 ERARGDS(1)EALDEES 79.311 0.0037801 301680000 293930 465860 526410 133400 580070 430880 435210 572370 503160 161690 TRUE FALSE FALSE 359313.7145 520338.2746 721150.9647 140687.3042 522316.1941 453440.2105 342223.8282 431995.3601 604139.5967 121383.6587 2.960148988 4.286724261 5.941087726 1.159030019 4.303019037 3.735595182 2.819356673 3.558925186 4.977108149 1 16.88921469 -5.243473681 24.99626305 3.253166389 4.385060301 0.156307286 1.360588677 1768.044597 2459935.006 0.358182874 0.618729109 5.71E-06 5.243473681 1.131893911 ERAS(ph)LDK ddPTM_HeLa_A485_30min_R1 3 ERASLDK 7 1 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 ERAS(1)LDK;ERAS(1)LDK;ERAS(1)LDK ;; 107.45 0.001583 3800000000 1733330 1623740 845560 2753810 1069150 1567540 2250590 2427530 1482790 3581300 TRUE FALSE FALSE 2118903.279 1813622.268 1158367.831 2904243.667 962701.672 1649613.971 1769733.061 1832174.461 1780372.352 2688547.819 0.788121849 0.674573186 0.430852605 1.080227641 0.358074967 0.613570627 0.658248683 0.681473637 0.662205946 1 21.3583957 -9.077315152 1.215812959 1.00157443 0.655072757 0.233348813 0.184299082 25.37209267 26.60009719 0.3439752 0.050983796 8.37E-10 9.077315152 -0.346501673 ERAS(ph)LDK ddPTM_HeLa_A486_30min_R1 4 ERASLDK 7 1 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 ERAS(1)LDK;ERAS(1)LDK;ERAS(1)LDK;ERAS(1)LDK ;;; 113.93 0.001285 3284690000 2737640 1584930 1436760 1377630 1331030 3397240 2752640 2079610 2594510 3931780 TRUE FALSE FALSE 2545745.573 1459334.375 1993111.95 3207192.262 1164079.806 2978123.069 2063900.358 1606128.201 2819404.216 2947236.696 0.863773709 0.495153435 0.676264635 1.088203152 0.394973301 1.010479773 0.700283204 0.544960709 0.956626327 1 21.4909315 -7.900760107 7.709117655 0.998761138 0.723270925 0.197967085 0.207335364 0.341965271 21.75898735 0.18980208 0.049111767 1.26E-08 7.900760107 -0.275490213 ERAS(ph)LDKKR ddPTM_HeLa_A485_30min_R1 1 ERASLDKKR 9 3 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 ERAS(1)LDKKR 82.85 0.036412 181050000 160980 147570 80708 196740 121650 341850 321470 639160 125140 235840 TRUE FALSE FALSE 196789.4456 164827.0278 110565.2477 207487.408 109538.0989 359748.7374 252785.3083 482405.0078 150254.4501 177049.4283 1.111494386 0.930966168 0.624488025 1.171917978 0.618686544 2.031911319 1.427766871 2.724691135 0.848658206 1 17.43379266 -6.259161596 24.99188561 1.703221293 0.894446185 0.311176878 0.522155769 215.6036502 2365614.458 0.16516543 0.157675859 5.51E-07 6.259161596 -0.808775108 ERAS(ph)SPPDR ddPTM_HeLa_A486_30min_R1 2 ERASSPPDR 9 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 ERAS(0.5)S(0.5)PPDR;ERAS(0.61)S(0.39)PPDR ; 77.64 0.0047539 449410000 173120 164638 187788 50864 198985 165538 168168 153667 148016 170643 TRUE FALSE FALSE 160985.182 151591.4853 260504.5427 118413.9625 174026.4458 145115.6046 126090.5877 118680.3786 160846.1461 127912.8821 1.258553317 1.185115078 2.036577853 0.925739148 1.360507581 1.134487803 0.985753629 0.927821942 1.257466358 1 16.96480204 -5.892574153 1.312130324 1.048838624 1.423453581 0.235686338 0.272501484 0.631070421 2.273939277 0.112003018 0.140021098 1.28E-06 5.892574153 0.374614957 ERAS(ph)SPPDRIDIFGR ddPTM_HeLa_A485_30min_R1 4 ERASSPPDRIDIFGR 15 2 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 ERAS(0.5)S(0.5)PPDRIDIFGR;ERAS(0.5)S(0.5)PPDRIDIFGR;ERAS(0.5)S(0.5)PPDRIDIFGR;ERAS(0.5)S(0.5)PPDRIDIFGR ;;; 118.52 7.21E-05 736660000 259598 500750 407494 223261 552690 522040 596170 913570 369257 359100 TRUE FALSE FALSE 317344.6795 559308.3566 558242.9878 235457.1831 497662.243 549373.2072 468793.4092 689515.5251 443363.4929 269582.9787 1.177168829 2.07471688 2.070764966 0.873412647 1.846044751 2.037863109 1.738957747 2.557711649 1.644627175 1 18.04036988 -5.971468404 24.99175829 1.895448345 1.590820731 0.039143553 0.49983869 589.9489406 516752.9719 0.151916415 0.172254142 1.07E-06 5.971468404 -0.304627614 ERAS(ph)SPPDRIDIFGR ddPTM_HeLa_A486_30min_R1 2 ERASSPPDRIDIFGR 15 2 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 ERAS(0.5)S(0.5)PPDRIDIFGR;ERAS(0.5)S(0.5)PPDRIDIFGR ; 92.474 0.00074701 294610000 389100 314277 316351 149494 492690 296669 415480 423950 226396 407750 TRUE FALSE FALSE 361826.0993 289372.5459 438850.5794 348029.587 430892.226 260068.9951 311522.5095 327425.8398 246020.1876 305646.746 1.183804847 0.946754872 1.435809755 1.138666096 1.409772005 0.850880955 1.019224034 1.071255768 0.804916757 1 18.22150568 -6.273836788 24.97569877 0.958082022 1.214758531 0.46032162 0.147893044 753.2192572 1517423.741 0.051216968 0.045495219 5.32E-07 6.273836788 0.256676509 ERASS(ph)PPDR ddPTM_HeLa_A485_30min_R1 1 ERASSPPDR 9 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 ERAS(0.42)S(0.58)PPDR 47.991 0.027504 266410000 63814 92539 75759 66921 121730 88491 68790 104270 80102 87104 TRUE FALSE FALSE 78009.20414 103360.6311 103785.4067 70576.72478 109610.1338 93124.25193 54092.45454 78697.61901 96177.73666 65390.57583 1.192973195 1.580665559 1.587161535 1.079310342 1.676237476 1.424123442 0.827220954 1.203500933 1.47081954 1 15.99679511 -6.579818742 24.9998776 1.139961022 1.434828227 0.289856725 0.227714587 111.3609511 48892.60968 0.08622852 0.06679233 2.63E-07 6.579818742 0.294867205 ERASS(ph)PPDRIDIFGR ddPTM_HeLa_A486_30min_R1 1 ERASSPPDRIDIFGR 15 2 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 ERAS(0.054)S(0.946)PPDRIDIFGR 109.72 0.00010856 83521000 6644.9 7361.3 5515.1 1862.4 10006 4554.7 6361.7 6621.6 3351 6072.8 TRUE FALSE FALSE 6179.126824 6777.963779 7650.69442 4335.76132 8750.954178 3992.787423 4769.935373 5114.006229 3641.467378 4552.131353 1.357413999 1.488964894 1.68068402 0.952468412 1.922386131 0.877124826 1.047846603 1.123431165 0.799947782 1 12.15232647 -6.294327526 24.99216179 0.982270495 1.462659564 0.519976394 0.244905101 539.7930179 410194.5692 0.081422431 0.071812513 5.08E-07 6.294327526 0.480389069 ERDAEQSGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 ERDAEQSGSPR 11 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2 P08651-5 NFIC Nuclear factor 1 C-type 1 0 ERDAEQSGS(1)PR;ERDAEQS(0.002)GS(0.998)PR;ERDAEQS(0.001)GS(0.999)PR;ERDAEQS(0.027)GS(0.973)PR ;;; 155.81 4.30E-06 7315740000 1638830 1987090 917020 2549870 883470 2142240 1545480 2701510 2063590 2678280 TRUE FALSE FALSE 2003382.08 2219462.89 1256263.858 2689162.941 795508.6247 2254404.374 1215275.573 2038960.437 2477733.585 2010634.086 0.996393174 1.103862162 0.624809789 1.337470085 0.395650621 1.121240503 0.604424038 1.014088267 1.232314523 1 20.93921912 -7.518964289 24.35292713 1.118505415 0.884039164 0.109116035 0.270871474 255.7233069 1591009.789 0.161552203 0.064193544 3.03E-08 7.518964289 -0.234466251 ERDAEQSGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 ERDAEQSGSPR 11 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2 P08651-5 NFIC Nuclear factor 1 C-type 1 0 ERDAEQS(0.002)GS(0.998)PR;ERDAEQS(0.027)GS(0.973)PR;ERDAEQS(0.004)GS(0.996)PR;ERDAEQS(0.004)GS(0.996)PR ;;; 168.76 5.55E-07 2612910000 2885240 1009250 3035650 1132500 1278640 5582470 1964300 1870730 5096810 3647110 TRUE FALSE FALSE 2682999.575 929273.3544 4211134.978 2636517.233 1118261.048 4893761.61 1472811.364 1444805.617 5538605.595 2733849.917 0.981399732 0.339913815 1.540368018 0.96439721 0.409042589 1.790062278 0.538731609 0.52848754 2.02593623 1 21.38250261 -7.753060461 24.99942227 1.512968219 0.895324158 0.196683416 0.506139263 260.6345893 777648.3531 0.340831876 0.124135317 1.77E-08 7.753060461 -0.617644061 ERDEIRHDR ddPTM_HeLa_A485_30min_R1 3 ERDEIRHDR 9 2 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 0 0 ;; ;; 133.81 0.00016753 360398000 118027 235173 107156 85098.8 132885 211214 232343 359485 148170 110553 FALSE FALSE TRUE 144281.699 262674.4366 146797.4635 89747.53196 119654.5028 222272.8384 182701.02 271320.7401 177906.3599 82994.17168 1.738455798 3.164974495 1.768768343 1.081371501 1.441721755 2.678174069 2.20137169 3.269154142 2.143600645 1 16.34072241 -6.271196455 24.72660392 2.396714206 1.866721658 0.059266424 0.735004375 1465.995222 3715146.245 0.263296407 0.235076517 5.36E-07 6.271196455 -0.529992548 ERDEIRHDR ddPTM_HeLa_A486_30min_R1 2 ERDEIRHDR 9 2 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 0 0 ; ; 146.11 7.78E-05 105153000 43866.9 28996.2 52148 21097.8 30989.2 53357 51947.8 60165 49722.9 60715 FALSE FALSE TRUE 40792.05684 26698.43551 72341.10217 49116.74462 27102.24557 46774.35583 38949.91099 46466.74289 54032.92101 45511.56881 0.896300829 0.586629646 1.589510185 1.079214492 0.595502337 1.027746506 0.855824398 1.020987501 1.18723486 1 15.4739457 ERDGGTSYSPQENS(ph)HNHSALHSSNSHSSNPSNNPSK ddPTM_HeLa_A486_30min_R1 1 ERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSK 36 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 ERDGGT(0.015)S(0.015)Y(0.011)S(0.015)PQENS(0.312)HNHS(0.312)ALHS(0.064)S(0.064)NS(0.064)HS(0.064)S(0.064)NPS(0.003)NNPSK 71.068 0.0003209 76753000 92815 112840 162900 3340.3 152100 29039 31040 33535 104100 5572.7 TRUE FALSE FALSE 86309.1478 103898.1474 225979.2426 7776.387209 133022.1997 25456.46343 23273.46369 25899.81256 113123.4718 4177.259648 20.661667 24.8723221 54.09748535 1.861600155 31.8443695 6.094058204 5.57146686 6.200192171 27.08078534 1 12.02834111 -5.763979927 1.364609114 9.994928772 30.4036151 0.264316285 13.87366117 0.569646824 2.219314159 5.286181622 7.408981056 1.72E-06 5.763979927 20.40868632 ERDHS(ph)PTPS(ph)VFNSDEER ddPTM_HeLa_A485_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 ERDHS(1)PT(0.019)PS(0.746)VFNS(0.235)DEER 129.02 1.60E-05 963630000 407320 587980 469770 404780 429510 469310 497030 462230 422250 494530 TRUE FALSE FALSE 497926.9288 656739.1463 643557.4718 426892.1064 386746.4763 493882.3459 390835.4801 348867.3678 506991.7019 371252.7722 1.341207302 1.768981124 1.733475195 1.149869142 1.041733572 1.330312884 1.052747641 0.939703065 1.365624017 1 18.50204227 -5.271038939 23.48481529 1.125186111 1.629997197 0.644666354 0.166194964 166.2951985 406832.647 0.045599703 0.068745595 5.36E-06 5.271038939 0.504811085 ERDHS(ph)PTPSVFNS(ph)DEER ddPTM_HeLa_A485_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 ERDHS(1)PTPSVFNS(1)DEER 222.46 3.73E-34 884410000 494170 702880 493610 489070 507070 528070 606500 501890 435660 516960 TRUE FALSE FALSE 604096.4116 785075.7018 676216.8798 515786.6557 456584.3304 555718.9286 476916.3204 378800.6906 523092.9659 388091.3859 1.556582891 2.022914525 1.742416617 1.329034022 1.176486639 1.431928017 1.228876336 0.976060547 1.347860285 1 18.56603689 -5.302543009 3.158490936 1.208747392 1.811982861 0.706942793 0.16720559 0.131805864 2.65781589 0.047652731 0.07963733 4.98E-06 5.302543009 0.603235469 ERDHS(ph)PTPSVFNS(ph)DEER ddPTM_HeLa_A486_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 ERDHS(1)PTPS(0.001)VFNS(0.999)DEER 190.61 6.36E-18 880370000 636080 713770 465620 179940 543610 555710 572970 548350 495180 645520 TRUE FALSE FALSE 591494.0767 657208.2657 645920.5337 418909.4137 475425.3648 487152.1502 429606.8457 423502.6754 538102.6011 483877.5904 1.222404361 1.358211826 1.334884166 0.865734272 0.982532306 1.006767331 0.887841996 0.875226883 1.112063488 1 18.8842826 -5.254903712 24.95812685 0.955952804 1.310471316 0.806309694 0.077152693 199.8606328 763217.4189 0.020712588 0.034827088 5.56E-06 5.254903712 0.354518512 ERDHS(ph)PTPSVFNSDEER ddPTM_HeLa_A485_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.333)PT(0.333)PS(0.333)VFNSDEER 158.17 5.28E-09 294140000 74719 92800 78123 70497 97255 95876 92914 106780 82154 94056 TRUE FALSE FALSE 91339.98377 103652.1527 107023.9487 74348.0726 87571.95072 100895.9191 73062.16486 80592.03758 98641.55424 70609.57017 1.293592123 1.467961814 1.51571449 1.052946115 1.240227784 1.428926969 1.034734593 1.141375558 1.396999783 1 16.10757611 -1.000000069 0.059472484 0.658428326 2.509869302 0.273431295 0.155470534 462.9932987 2.063023675 13.12539399 74.48233548 0.099999984 1.000000069 1.851440976 ERDHS(ph)PTPSVFNSDEER ddPTM_HeLa_A486_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.333)PT(0.333)PS(0.333)VFNSDEER 157.8 6.37E-09 239960000 124300 140260 113260 35421 150830 113110 119770 125590 107800 112750 TRUE FALSE FALSE 115587.2119 129145.2868 157117.3052 82461.87808 131911.495 99155.63822 89802.2792 96995.89861 117144.1908 84516.66612 1.367626259 1.528045209 1.859009736 0.975687777 1.560774946 1.173208111 1.062539299 1.147654103 1.386048411 1 16.36694824 -5.266352638 24.9999072 1.202579771 1.579208881 0.450791368 0.200909801 386.1820807 1964993.663 0.055666749 0.085595571 5.42E-06 5.266352638 0.376629111 ERDHS(ph)PTPSVFNSDEERYR ddPTM_HeLa_A485_30min_R1 4 ERDHSPTPSVFNSDEERYR 19 2 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.995)PT(0.005)PSVFNSDEERYR;ERDHS(0.991)PT(0.009)PSVFNSDEERYR;ERDHS(0.992)PT(0.008)PSVFNSDEERYR;ERDHS(0.999)PT(0.001)PSVFNSDEERYR ;;; 216.15 6.53E-35 6701100000 337378 754338 780607 255172 1175400 769999 866660 1510140 704930 391798 TRUE FALSE FALSE 412426.5722 842551.2672 1069386.013 269111.4002 1058373.049 810314.957 681491.011 1139775.797 846402.985 294129.9691 1.402191601 2.864554298 3.635760124 0.914940429 3.598317615 2.754955435 2.316972368 3.875075364 2.87764959 1 18.16609426 -4.257982187 23.90707791 2.737834306 1.402190645 0.123741305 0.969332452 353.116149 2441645.779 0.227546916 1.600143741 5.52E-05 4.257982187 -1.335643661 ERDHS(ph)PTPSVFNSDEERYR ddPTM_HeLa_A486_30min_R1 4 ERDHSPTPSVFNSDEERYR 19 2 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.997)PT(0.003)PSVFNSDEERYR;ERDHS(0.997)PT(0.003)PSVFNSDEERYR;ERDHS(0.998)PT(0.002)PSVFNSDEERYR;ERDHS(1)PTPSVFNSDEERYR ;;; 251.52 4.53E-47 4671190000 469286 460491 582936 178993 1062100 414029 591390 684376 401496 381384 TRUE FALSE FALSE 436391.4748 424000.0161 808664.4308 416704.7498 928881.5143 362950.3115 443417.9669 528558.5246 436297.9965 285882.964 1.526468974 1.483124458 2.828655543 1.457606092 3.249167076 1.269576565 1.551047186 1.848863315 1.526141993 1 18.12506513 -7.957021086 0.645862941 1.014242699 2.009031658 0.191228485 0.603593073 1.341597599 1.319420668 0.602929325 0.255067089 1.10E-08 7.957021086 0.994788959 ERDHSPT(ph)PSVFNSDEER ddPTM_HeLa_A485_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.286)PT(0.357)PS(0.357)VFNSDEER 195.15 1.82E-18 1293200000 556070 760550 738160 571870 730960 592980 805010 796910 714930 689160 TRUE FALSE FALSE 679765.8531 849489.7066 1011236.101 603109.81 658183.0558 624027.5159 633013.0372 601466.573 858409.8933 517365.095 1.313899719 1.641954037 1.954588957 1.165733475 1.272182956 1.206164702 1.223532556 1.16255731 1.659195608 1 18.9808232 -5.28576676 24.99530259 1.247189035 1.637328274 0.420233025 0.212790638 715.5736208 735218.55 0.058973807 0.087519405 5.18E-06 5.28576676 0.390139239 ERDHSPT(ph)PSVFNSDEER ddPTM_HeLa_A486_30min_R1 1 ERDHSPTPSVFNSDEER 17 1 Q6UN15-5;Q6UN15;Q6UN15-3 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.25)PT(0.744)PS(0.006)VFNSDEER 249.19 7.12E-43 1611500000 1003000 1095600 870400 342850 1091000 945790 1007100 999560 993960 1101300 TRUE FALSE FALSE 932694.8795 1008780.666 1207442.19 798172.1267 954156.6068 829108.0459 755112.928 771982.0082 1080117.253 825527.3117 1.129817107 1.221983394 1.462631427 0.96686338 1.155814706 1.004337511 0.91470375 0.935138059 1.308396752 1 19.65495642 -5.282958477 24.99598982 1.036073181 1.266527952 0.383110532 0.134031976 807.5593389 938036.8179 0.037934808 0.056327936 5.21E-06 5.282958477 0.230454771 ERDKEVS(ph)DDEAEEK ddPTM_HeLa_A485_30min_R1 2 ERDKEVSDDEAEEK 14 2 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ERDKEVS(1)DDEAEEK;ERDKEVS(1)DDEAEEK ; 248.89 5.66E-36 2075090000 1875840 1399440 569980 3222700 1127750 1457660 2460120 1927450 796930 3599200 TRUE FALSE FALSE 2293114.136 1563092.334 780839.3208 3398747.941 1015467.25 1533980.824 1934495.265 1454739.865 956866.5411 2701985.678 0.848677384 0.578497639 0.288987217 1.25787045 0.375822588 0.567723521 0.71595319 0.538396586 0.354134572 1 21.3655886 ERDKEVS(ph)DDEAEEK ddPTM_HeLa_A486_30min_R1 2 ERDKEVSDDEAEEK 14 2 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ERDKEVS(1)DDEAEEK;ERDKEVS(1)DDEAEEK ; 258.37 8.62E-42 1041640000 1794270 1351310 456543 1107980 798010 1816300 2164070 1668520 922310 4598510 TRUE FALSE FALSE 1668500.939 1244227.274 633328.6762 2579433.434 697916.1447 1592223.373 1622596.797 1288634.42 1002256.573 3447013.165 0.48404252 0.360958086 0.183732596 0.748309714 0.202469823 0.461913923 0.470725442 0.373840876 0.290760878 1 21.71691538 -10.77717248 2.700628522 1.150542458 0.398006235 0.579537089 0.15397819 53070810.04 40370891.1 52814486.51 0.037634927 1.67E-11 10.77717248 -0.752536223 ERDKEVS(ph)DDEAEEKEDK ddPTM_HeLa_A485_30min_R1 1 ERDKEVSDDEAEEKEDK 17 3 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ERDKEVS(1)DDEAEEKEDK 290.54 1.69E-67 541150000 466300 310950 58758 728450 157230 326200 577680 526480 116170 831370 TRUE FALSE FALSE 570026.8263 347312.8976 80495.02932 768243.379 141575.6291 343279.3276 454253.9488 397359.9545 139484.2534 624124.7592 0.913321925 0.556479922 0.128972658 1.230913159 0.226838668 0.55001716 0.727825554 0.636667507 0.223487774 1 19.25147492 -10.26278295 3.394260199 1.001312948 0.57768493 0.13666204 0.318823941 109944770.6 163365392.6 1509580.394 0.078183226 5.46E-11 10.26278295 -0.423628018 ERDLS(ph)R ddPTM_HeLa_A485_30min_R1 1 ERDLSR 6 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERDLS(1)R 70.256 0.013792 177620000 64519 58693 29658 59461 21878 74470 41019 58237 54087 59133 TRUE FALSE FALSE 78871.02896 65556.63579 40629.72837 62709.20387 19699.7495 78369.13405 32254.95556 43954.28444 64941.76478 44392.23136 1.776685392 1.476759194 0.915244112 1.412616621 0.443765697 1.765379474 0.726590094 0.990134604 1.462908324 1 15.43801961 -4.557412444 3.965070588 1.089707007 1.730288183 0.277064807 0.361152603 0.244980246 8.187384958 0.087155287 0.296502145 2.77E-05 4.557412444 0.640581176 ERDLS(ph)RDR ddPTM_HeLa_A485_30min_R1 4 ERDLSRDR 8 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERDLS(1)RDR;ERDLS(1)RDR;ERDLS(1)RDR;ERDLS(1)RDR ;;; 79.659 0.0066753 2488140000 489443 818816 751108 642549 1072463 952636 1168175 1617110 848419 980590 TRUE FALSE FALSE 598317.9068 914569.4084 1028974.105 677649.8248 965684.8181 1002514.548 918584.8681 1220511.237 1018688.911 736146.9594 0.81276965 1.24237341 1.397783543 0.920536064 1.311809831 1.361840235 1.247828109 1.657972259 1.383811884 1 19.48963428 -5.976729004 24.20727739 1.362989355 1.124555511 0.210068982 0.214439308 252.0539197 262193.0019 0.065819999 0.074627753 1.06E-06 5.976729004 -0.238433844 ERDLS(ph)RDR ddPTM_HeLa_A486_30min_R1 1 ERDLSRDR 8 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERDLS(1)RDR 69.721 0.012043 650300000 217900 172970 256050 104290 261300 293030 276860 253580 241830 254000 TRUE FALSE FALSE 202626.3352 159263.2273 355199.4173 242792.3905 228525.3175 256878.9379 207586.6997 195845.3696 262792.0191 190396.7467 1.06423213 0.836480822 1.865575034 1.275191907 1.20025852 1.349177138 1.090284909 1.028617206 1.380233768 1 17.5386493 -6.771915028 24.92514513 1.12716872 1.270466046 0.064114407 0.262195315 686.8478306 1634228.744 0.112414979 0.07670451 1.69E-07 6.771915028 0.143297326 ERDQRPS(ph)SPIR ddPTM_HeLa_A485_30min_R1 3 ERDQRPSSPIR 11 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.5)S(0.5)PIR;ERDQRPS(0.5)S(0.5)PIR;ERDQRPS(0.5)S(0.5)PIR ;; 119.88 0.00013209 5246550000 511120 707860 697500 519460 836300 701900 756440 797110 646320 739880 TRUE FALSE FALSE 624816.8807 790638.0694 955534.2754 547836.7845 753035.0356 738650.3987 594820.4145 601617.5227 776030.4956 555441.5325 1.124901262 1.423440674 1.720314776 0.986308644 1.355741318 1.329843657 1.070896538 1.083133845 1.397141644 1 19.08327553 -6.139132195 0.877118446 1.149365446 1.375415995 0.135371365 0.207522705 1.210401815 2.030999027 0.12554618 0.132896215 7.26E-07 6.139132195 0.226050549 ERDQRPS(ph)SPIR ddPTM_HeLa_A486_30min_R1 1 ERDQRPSSPIR 11 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.5)S(0.5)PIR 126.71 4.01E-05 2286400000 419940 448650 410380 136740 500730 449440 472080 486390 402290 459840 TRUE FALSE FALSE 390504.3746 413097.34 569290.1264 318337.6305 437923.7743 393992.6624 353960.5908 375649.6148 437160.8211 344693.0709 1.132904626 1.198449795 1.651585641 0.923539396 1.27047455 1.143024608 1.026886296 1.089809011 1.268261123 1 18.39495277 -5.293820839 24.99963982 1.112340842 1.314727434 0.282242315 0.163214318 889.4192198 686661.5894 0.045442861 0.067407869 5.08E-06 5.293820839 0.202386593 ERDQRPS(ph)SPIRHQGR ddPTM_HeLa_A485_30min_R1 1 ERDQRPSSPIRHQGR 15 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.5)S(0.5)PIRHQGR 163.56 5.98E-12 113970000 2419.1 12883 6178.8 1761.5 11012 14191 16284 43705 6086.7 3939.3 TRUE FALSE FALSE 2957.220449 14389.55478 8464.595241 1857.726285 9915.606615 14934.01882 12804.79037 32986.28022 7308.244859 2957.305007 0.999971407 4.865766212 2.862266564 0.628182173 3.352919834 5.049874389 4.329884926 11.15416913 2.471251643 1 11.53006733 -4.253203037 23.39998828 4.17250752 0.999967731 0.08837089 2.791568052 1082.104313 3074149.963 0.71931507 7.514104863 5.58E-05 4.253203037 -3.172539789 ERDQRPS(ph)SPIRHQGR ddPTM_HeLa_A486_30min_R1 1 ERDQRPSSPIRHQGR 15 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.5)S(0.5)PIRHQGR 59.872 0.028371 26160000 983.16 2179.3 1472.8 0 3547.2 0 1336 2576.2 0 1343.6 TRUE FALSE FALSE 914.245561 2006.604331 2043.107603 0 3102.2771 0 1001.718669 1989.655498 0 1007.153815 0.907751674 1.992351418 2.028595407 0 3.080241622 0 0.99460346 1.975522973 0 1 9.976068316 -6.323874623 24.9999263 0.867533023 1.558246332 0.160453017 0.913454761 496.565374 198829.788 0.309530407 0.272980199 4.74E-07 6.323874623 0.690713309 ERDQRPSS(ph)PIR ddPTM_HeLa_A485_30min_R1 2 ERDQRPSSPIR 11 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.182)S(0.818)PIR;ERDQRPS(0.417)S(0.583)PIR ; 148.41 5.34E-07 1157010000 266486 363133 393981 279367 420035 335414 374595 388637 354329 365362 TRUE FALSE FALSE 325764.8913 405598.2455 539730.9668 294628.1118 378214.8406 352975.7584 294559.7181 293323.1664 425439.5802 274283.9774 1.187692021 1.478752968 1.967781611 1.074171793 1.378917005 1.286898935 1.073922439 1.069414149 1.551091625 1 18.06531082 -5.311573987 24.99992557 1.213016665 1.538145854 0.300615088 0.237240772 453.6236222 226201.2191 0.06665229 0.098861455 4.88E-06 5.311573987 0.325129189 ERDQRPSS(ph)PIR ddPTM_HeLa_A486_30min_R1 3 ERDQRPSSPIR 11 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.444)S(0.556)PIR;ERDQRPS(0.346)S(0.654)PIR;ERDQRPS(0.099)S(0.901)PIR ;; 138.55 8.49E-06 3256460000 867920 906580 783770 300809 990470 800200 946310 969670 785000 948800 TRUE FALSE FALSE 807083.2899 834739.2991 1087266.734 700298.554 866236.0168 701479.4598 709533.229 748897.3087 853044.4321 711214.3043 1.1347962 1.17368182 1.528747 0.984651953 1.217967653 0.986312361 0.997636331 1.052984036 1.199419678 1 19.43992482 -5.309758922 24.99979849 1.065492337 1.268536905 0.38317128 0.125552198 410.1744541 212217.1742 0.035204786 0.052217232 4.90E-06 5.309758922 0.203044569 ERDQRPSS(ph)PIRHQGR ddPTM_HeLa_A485_30min_R1 2 ERDQRPSSPIRHQGR 15 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 ERDQRPS(0.447)S(0.553)PIRHQGR;ERDQRPS(0.185)S(0.815)PIRHQGR ; 137.69 6.15E-06 189606000 3430.7 9169.9 8443.9 3675.2 10624.5 11712.2 11057.5 31626 4978.5 965.37 TRUE FALSE FALSE 4193.847379 10242.24004 11567.64999 3875.96687 9566.687475 12325.43268 8694.974794 23869.67391 5977.639284 724.7210253 5.78684381 14.13266578 15.96152117 5.348219155 13.20051046 17.00714103 11.9976853 32.93636183 8.248193547 1 9.50128194 -2.692765826 10.43930602 10 11.26451313 0 8.749216937 0 0 2.094836744 0 0.002028776 2.692765826 1.264513132 ERDSASFNPELLTHILDGS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 ERDSASFNPELLTHILDGSPEK 22 1 K7ELT1;I3L2U4;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 ERDSASFNPELLTHILDGS(1)PEK 116.35 4.42E-05 35106000 28378 22931 18792 34560 31612 24556 37103 36646 23144 46339 TRUE FALSE FALSE 34690.5882 25612.58098 25743.9428 36447.92529 28464.59828 25841.71419 29175.64095 27658.51104 27788.78851 34787.54011 0.997213028 0.736257318 0.740033435 1.047729307 0.818241192 0.742843964 0.838680771 0.795069469 0.798814415 1 15.08628305 -4.238360137 23.46407205 0.829237747 0.997213462 0.183863761 0.101620921 4624.061167 4700998.186 0.025029098 1.217122414 5.78E-05 4.238360137 0.167975715 ERDSASFNPELLTHILDGS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 ERDSASFNPELLTHILDGSPEK 22 1 K7ELT1;I3L2U4;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 ERDSASFNPELLTHILDGS(1)PEK 96.887 0.00056328 29796000 46155 40520 23286 22646 37548 45769 57857 48470 26600 67329 TRUE FALSE FALSE 42919.77284 37309.04763 32302.96282 52721.03247 32838.37972 40122.48613 43380.56665 37434.43909 28905.70942 50469.38016 0.850412125 0.739241249 0.640050714 1.044614225 0.650659462 0.794986703 0.859542291 0.741725755 0.572737555 1 15.62312075 ERDSELS(ph)DTDSGCCLGQSESDK ddPTM_HeLa_A486_30min_R1 1 ERDSELSDTDSGCCLGQSESDK 22 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 ERDS(0.014)ELS(0.986)DT(0.001)DSGCCLGQSESDK 210.11 1.51E-27 477400000 174470 211930 110390 75069 195150 227930 282090 250030 192980 288990 TRUE FALSE FALSE 162240.554 195135.895 153135.9643 174764.4258 170672.4673 199810.314 211508.0984 193103.6271 209707.6618 216625.023 0.748946505 0.900800343 0.706917245 0.806760103 0.78787051 0.922378732 0.976378885 0.891418842 0.96806758 1 17.72484038 -6.320072378 3.993850012 0.949679265 0.792029085 0.69860667 0.053218367 0.134793272 4.397550077 0.0185355 0.01652754 4.79E-07 6.320072378 -0.15765018 ERDTSPDKGELVS(ph)DEEEDT ddPTM_HeLa_A486_30min_R1 1 ERDTSPDKGELVSDEEEDT 19 2 Q9UPU7 Q9UPU7 TBC1D2B TBC1 domain family member 2B 1 0 ERDTSPDKGELVS(0.97)DEEEDT(0.03) 58.964 0.016259 716970000 340710 337390 214200 176180 357920 463220 474410 453610 280970 500070 TRUE FALSE FALSE 316827.9884 310653.9876 297143.9765 410155.9436 313026.3361 406072.6261 355707.6002 350332.9052 305324.7058 374849.2171 0.845214486 0.828743861 0.792702673 1.094189143 0.835072669 1.083295916 0.948935156 0.934596871 0.814526727 1 18.51595086 -5.221536846 24.997242 0.955572989 0.822872653 0.345755078 0.085932333 599.7186618 375697.4351 0.022454331 0.038891386 6.00E-06 5.221536846 -0.132700336 ERECS(ph)PS(ph)SPLPPLPEDEEGSEVTNSK ddPTM_HeLa_A486_30min_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 2 0 ERECS(0.944)PS(0.563)S(0.494)PLPPLPEDEEGSEVTNSK 103.1 0.0010033 149780000 100440 125900 73513 55803 121680 124390 156530 136470 92418 142570 TRUE FALSE FALSE 93399.67467 115923.2255 101979.2023 129912.2041 106417.7598 109044.0265 117364.5384 105398.7601 100428.8667 106869.544 0.8739597 1.084717134 0.954240081 1.215614844 0.995772563 1.020347074 1.098203791 0.986237577 0.939733275 1 16.70549124 -9.49387919 10.12825532 0.999997332 1.025341505 0 0.090976556 0 0 0.084746813 0.020554121 3.21E-10 9.49387919 0.025344173 ERECSPS(ph)SPLPPLPEDEEGSEVTNSK ddPTM_HeLa_A485_30min_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 1 0 ERECS(0.011)PS(0.494)S(0.494)PLPPLPEDEEGSEVTNSK 182.74 1.89E-20 536870000 264960 258330 226890 326950 373090 307610 428050 434260 287740 441160 TRUE FALSE FALSE 323899.4379 288539.4463 310826.0527 344810.4506 335943.8496 323715.9839 336593.6207 327757.0541 345486.7787 331186.9309 0.977995831 0.871228359 0.938521492 1.041135439 1.014363244 0.977441903 1.01632519 0.989643683 1.043177573 1 18.33728622 -5.136380162 5.469769107 1.00992452 0.920335923 0.600391279 0.030837418 0.139186432 5.609391147 0.008004273 0.014181166 7.30E-06 5.136380162 -0.089588597 ERECSPS(ph)SPLPPLPEDEEGSEVTNSK ddPTM_HeLa_A486_30min_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 1 0 ERECS(0.065)PS(0.467)S(0.467)PLPPLPEDEEGSEVTNSK 119.61 5.68E-05 636020000 245970 320750 169440 109010 318390 270340 345970 333060 211720 299360 TRUE FALSE FALSE 228728.7732 295332.6018 235051.7058 253780.7891 278454.5573 236988.1994 259404.6467 257229.5086 230072.0601 224398.3075 1.019298121 1.316108865 1.047475395 1.130938962 1.240894196 1.056105111 1.156000906 1.146307704 1.025284293 1 17.77570227 -7.809216635 4.491911396 1.00322885 1.143215124 0.262798794 0.084848577 0.255511025 10.33464076 0.073656388 0.020046812 1.55E-08 7.809216635 0.139986274 ERECSPSS(ph)PLPPLPEDEEGSEVTNSK ddPTM_HeLa_A485_30min_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 1 0 ERECSPS(0.174)S(0.826)PLPPLPEDEEGSEVTNSK 204.58 1.08E-28 509320000 245150 233520 184710 300530 332910 271670 374300 371210 259640 445400 TRUE FALSE FALSE 299682.7717 260828.1326 253041.9154 316947.1929 299764.3115 285894.2211 294327.7473 280170.1655 311747.3664 334369.977 0.896261005 0.78005847 0.756772237 0.947893695 0.896504866 0.855023599 0.880245738 0.837904671 0.932342578 1 18.35108579 -14 0.116136265 1.464383748 0.787885852 0.40549204 0.05442635 167.3224017 1.270389833 18.17177908 0.608567993 1.00E-14 14 -0.676497897 ERECSPSS(ph)PLPPLPEDEEGSEVTNSK ddPTM_HeLa_A486_30min_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 1 0 ERECS(0.007)PS(0.248)S(0.745)PLPPLPEDEEGSEVTNSK 209.36 6.02E-29 549490000 341530 420600 258790 137750 420610 418890 467310 485720 310040 460110 TRUE FALSE FALSE 317590.5107 387270.1242 359000.4186 320688.9615 367853.1718 367211.6108 350384.0953 375132.1592 336914.5168 344895.4612 0.920831227 1.122862339 1.040896327 0.929814966 1.066564258 1.064704098 1.015913906 1.087669168 0.976859816 1 18.39579962 EREDES(ph)EDESDILEESPCGR ddPTM_HeLa_A485_30min_R1 4 EREDESEDESDILEESPCGR 20 1 Q9NSY0 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 EREDES(1)EDESDILEESPCGR;EREDES(1)EDESDILEESPCGR;EREDES(1)EDESDILEESPCGR;EREDES(1)EDESDILEESPCGR ;;; 328.8 2.77E-114 2930950000 837440 1025260 860347 1035810 1254070 1095000 1229770 1328170 935170 1362180 TRUE FALSE FALSE 1023725.639 1145155.238 1178625.157 1092393.677 1129210.387 1152332.507 967019.5932 1002434.225 1122850.041 1022613.595 1.001087453 1.119831815 1.152561596 1.068236999 1.104239561 1.126850369 0.945635378 0.980266867 1.098019865 1 19.96382968 -6.74987428 24.99994469 1.004336093 1.098331522 0.411200792 0.052377526 211.9831972 458238.6759 0.020185649 0.01549821 1.78E-07 6.74987428 0.093995429 EREDES(ph)EDESDILEESPCGR ddPTM_HeLa_A486_30min_R1 4 EREDESEDESDILEESPCGR 20 1 Q9NSY0 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 EREDES(1)EDESDILEESPCGR;EREDES(1)EDESDILEESPCGR;EREDES(1)EDESDILEESPCGR;EREDES(1)EDESDILEESPCGR ;;; 300.27 2.47E-87 2801610000 888420 1060490 859150 426844 1204860 1054420 1192870 1256280 919440 1220050 TRUE FALSE FALSE 826146.3458 976452.9102 1191835.889 993714.4035 1053735.224 924336.381 894401.3091 970252.4684 999137.7995 914541.5388 0.903344803 1.06769662 1.303205856 1.086571097 1.152200506 1.010710112 0.977977786 1.060916784 1.092501278 1 19.80268917 -6.271755874 24.2210297 1.029075774 1.110918346 0.125953459 0.09646592 999.9289898 2347621.775 0.035509767 0.031683168 5.35E-07 6.271755874 0.081842572 EREDSGDAEAHAFKS(ph)PSKENK ddPTM_HeLa_A485_30min_R1 1 EREDSGDAEAHAFKSPSKENK 21 3 Q9NPI1;Q9NPI1-2 Q9NPI1 BRD7 Bromodomain-containing protein 7 1 0 EREDSGDAEAHAFKS(0.955)PS(0.045)KENK 68.361 0.0063227 364360000 212430 146620 73979 407450 215370 223580 444790 427000 143640 579150 TRUE FALSE FALSE 259684.3206 163765.9336 101346.9106 429707.9618 193927.0066 235286.3031 349756.9829 322277.5805 172467.2305 434778.5635 0.597279495 0.376665152 0.233100063 0.988337508 0.446036265 0.541163532 0.804448545 0.741245332 0.396678321 1 18.72992129 -14 0.097977947 2.285546061 0.286443899 0.269803837 0.213458127 260.1657646 1.738922633 69.54232001 3.879960702 1.00E-14 14 -1.999102162 EREES(ph)EDELEEANGNNPIDIEVDQNK ddPTM_HeLa_A485_30min_R1 4 EREESEDELEEANGNNPIDIEVDQNK 26 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK ;;; 333.18 7.46E-124 3853736000 1652275 1156203 1024784 2326363 1763040 1457386 2258926 1726123 1434853 3308390 TRUE FALSE FALSE 2019817.873 1291410.883 1403894.246 2453446.32 1587505.547 1533692.477 1776288.006 1302788.628 1722814.836 2483669.259 0.813239471 0.519960892 0.56525008 0.987831335 0.639177516 0.617510754 0.715187016 0.524541914 0.693657108 1 21.24404164 -8.049803498 22.00614864 1.000000002 0.669100441 0.343583897 0.134896613 3713.247957 1640732.47 0.130402418 0.033669759 8.92E-09 8.049803498 -0.330899561 EREES(ph)EDELEEANGNNPIDIEVDQNK ddPTM_HeLa_A486_30min_R1 4 EREESEDELEEANGNNPIDIEVDQNK 26 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK ;;; 327.17 1.13E-123 6083450000 2721350 2857410 1535670 1402290 2456690 3240860 3894650 3738410 2411470 4133220 TRUE FALSE FALSE 2530597.418 2630978.425 2130322.551 3264601.988 2148549.032 2841035.644 2920167.377 2887255.652 2620498.161 3098234.809 0.81678684 0.849186258 0.687592349 1.053697408 0.693475209 0.916985257 0.942526166 0.931903432 0.845803602 1 21.56301506 -1.000808212 0.046567929 1.29103217 0.128838283 0.207038624 0.101563661 871.9809904 3.082237348 19.09480823 74.9106463 0.099814075 1.000808212 -1.162193888 EREES(ph)EDELEEANGNNPIDIEVDQNKESK ddPTM_HeLa_A485_30min_R1 2 EREESEDELEEANGNNPIDIEVDQNKESK 29 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNKESK;EREES(1)EDELEEANGNNPIDIEVDQNKESK ; 296.76 1.41E-92 1431640000 480780 316560 213495 596700 535130 544440 923920 960620 373380 929150 TRUE FALSE FALSE 587727.8523 353578.9383 292475.6848 629296.2101 481850.5782 572946.0365 726516.9443 725026.4388 448313.9412 697530.0047 0.842584331 0.506901403 0.419301941 0.902177979 0.690795485 0.821392675 1.041556549 1.039419715 0.642716354 1 19.41189575 -5.89862503 1.208064873 0.925128905 0.604538289 0.34522314 0.168771679 0.502349134 1.546910195 0.073907258 0.093460544 1.26E-06 5.89862503 -0.320590615 EREES(ph)EDELEEANGNNPIDIEVDQNKESK ddPTM_HeLa_A486_30min_R1 2 EREESEDELEEANGNNPIDIEVDQNKESK 29 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNKESK;EREES(1)EDELEEANGNNPIDIEVDQNKESK ; 294.31 1.72E-92 1595400000 453100 371990 174765 276666 389190 453310 684520 647230 301940 796010 TRUE FALSE FALSE 421340.0298 342512.1576 242438.6884 644092.4299 340374.1611 397385.2211 513245.8559 499869.8579 328112.4023 596683.9148 0.706136062 0.574026129 0.406310079 1.079453315 0.570442998 0.665989498 0.86016372 0.837746494 0.549893158 1 19.18660736 -13.99999998 0.097695569 1.898241901 0.496199531 0.200081633 0.182196716 315.4395 2.10356732 58.95982956 3.315934038 1.00E-14 13.99999998 -1.40204237 EREES(ph)EDELEEANGNNPIDIEVDQNKESKK ddPTM_HeLa_A485_30min_R1 1 EREESEDELEEANGNNPIDIEVDQNKESKK 30 3 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNKESKK 184.01 5.89E-20 418390000 95047 75729 36551 81352 125300 171320 309790 436620 88179 157150 TRUE FALSE FALSE 116189.8772 84584.8478 50072.73591 85796.05377 112824.692 180290.0503 243600.8357 329538.2604 105875.7165 117975.3971 0.98486532 0.716970232 0.424433714 0.727236829 0.956340854 1.52820041 2.06484438 2.793279518 0.89743895 1 16.8481265 -6.265864248 2.445543012 1.833753643 0.703036851 0.418985629 0.521947597 0.251887221 2.972869338 0.196434424 0.181072177 5.42E-07 6.265864248 -1.130716793 EREES(ph)EDELEEANGNNPIDIEVDQNKESKK ddPTM_HeLa_A486_30min_R1 2 EREESEDELEEANGNNPIDIEVDQNKESKK 30 3 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNKESKK;EREES(1)EDELEEANGNNPIDIEVDQNKESKK ; 223.33 5.37E-38 949270000 201758 123018 70588 153166 215209 178011 343090 342940 93531 391710 TRUE FALSE FALSE 187615.8061 113269.6057 97921.56401 356578.1886 188215.4805 156049.8127 257245.2532 264860.0483 101638.3424 293623.2664 0.638967778 0.38576509 0.333493886 1.214407131 0.641010104 0.531462696 0.876106503 0.902040399 0.346152209 1 18.16360676 EREKEIS(ph)DDEAEEEKGEK ddPTM_HeLa_A485_30min_R1 5 EREKEISDDEAEEEKGEK 18 3 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK ;;;; 175.42 9.65E-13 6344740000 3681600 2714540 1273478 7382400 3134600 4663660 9865110 10949680 2251810 9935560 TRUE FALSE FALSE 4500559.219 3031981.84 1744590.506 7785681.819 2822508.218 4907842.026 7757348.658 8264253.812 2703727.612 7458807.742 0.603388554 0.406496848 0.233896699 1.043823904 0.378412786 0.657992832 1.040025286 1.1079859 0.362487908 1 22.83051361 -6.001660601 0.853597301 0.873511419 0.455530955 0.220320368 0.281919258 0.925751901 1.486385517 0.163213844 0.202935803 9.96E-07 6.001660601 -0.417980464 EREKEIS(ph)DDEAEEEKGEK ddPTM_HeLa_A486_30min_R1 8 EREKEISDDEAEEEKGEK 18 3 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK;EREKEIS(1)DDEAEEEKGEK ;;;;;;; 221.43 1.19E-33 14342270000 6138860 3805158 1420135 7128510 3373045 6429870 11492850 9432360 3018755 20020920 TRUE FALSE FALSE 5708557.615 3503623.422 1970049.305 16595531.53 2949966.244 5636618.014 8617217.371 7284817.535 3280423.114 15007551.32 0.380379017 0.233457367 0.131270536 1.10581208 0.196565461 0.375585457 0.574192098 0.485410137 0.218584834 1 23.83918527 -10.80978936 2.872611089 1.165436365 0.417825414 0.304908017 0.266512361 98086326.03 81163713.08 113201511.5 0.066140731 1.55E-11 10.80978936 -0.747610951 EREKEPS(ph)RER ddPTM_HeLa_A485_30min_R1 1 EREKEPSRER 10 3 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 EREKEPS(1)RER 94.717 0.014595 1807500000 911420 923190 540160 1491900 786340 1049500 1457400 1950100 862120 1881800 TRUE FALSE FALSE 1114162.235 1031149.04 739987.6619 1573398.719 708049.2286 1104450.197 1146014.584 1471834.917 1035139.576 1412701.892 0.788674696 0.729912691 0.523810201 1.113751407 0.501202152 0.7817999 0.811221809 1.041858106 0.732737446 1 20.43002563 -6.950900698 3.37172955 0.917768391 0.736048363 0.180431493 0.174714928 0.417581873 9.741861462 0.079065299 0.048678353 1.12E-07 6.950900698 -0.181720028 ERENMDT(ph)DDER ddPTM_HeLa_A485_30min_R1 2 ERENMDTDDER 11 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 ERENMDT(1)DDER;ERENMDT(1)DDER ; 95.347 0.0024263 762380000 588490 679810 643030 564990 673890 572440 622930 567910 560220 655780 TRUE FALSE FALSE 719397.5702 759307.8659 880913.5557 595853.9731 606795.1454 602412.0732 489835.9166 428629.1821 672651.0154 492306.1147 1.461280997 1.542349045 1.789361394 1.210332261 1.232556589 1.223653445 0.994982394 0.870655816 1.366326753 1 18.90919613 -5.411153754 4.886548302 1.116165361 1.589944636 0.66442487 0.153799835 0.139540963 5.069336947 0.045354008 0.067914195 3.88E-06 5.411153754 0.473779275 ERENMDT(ph)DDER ddPTM_HeLa_A486_30min_R1 1 ERENMDTDDER 11 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 ERENMDT(1)DDER 95.57 0.0023894 227200000 329220 354050 283300 102530 327610 348240 312040 308640 298200 342630 TRUE FALSE FALSE 306143.3781 325993.7886 393001.347 238695.0216 286518.099 305277.6894 233964.2916 238369.4096 324048.2161 256833.2179 1.191992923 1.269282032 1.530181144 0.92937753 1.115580381 1.188622297 0.910958067 0.928109734 1.261706795 1 17.97047228 -5.272811782 24.99741776 1.047763954 1.324365043 0.478989259 0.135077104 627.9295699 1380236.397 0.038307999 0.057381892 5.34E-06 5.272811782 0.276601089 ERENMDT(ph)DDERQYQDFLEDLEEDEAIRK ddPTM_HeLa_A485_30min_R1 1 ERENMDTDDERQYQDFLEDLEEDEAIRK 28 3 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 ERENMDT(1)DDERQYQDFLEDLEEDEAIRK 144.43 1.92E-09 51805000 21503 20670 17211 25012 35032 29432 46005 47330 23267 34535 TRUE FALSE FALSE 26286.26817 23087.17669 23578.06511 26378.34223 31544.09108 30973.01401 36175.65592 35722.24329 27936.47348 25926.06007 1.013893669 0.890500779 0.909434949 1.017445079 1.21669436 1.194667216 1.395339509 1.377850826 1.077544116 1 14.66211536 -5.68993849 2.674360633 1.242509254 0.933978165 0.521842426 0.117974048 0.19493639 2.836639961 0.03755603 0.049437015 2.04E-06 5.68993849 -0.308531089 ERENMDT(ph)DDERQYQDFLEDLEEDEAIRK ddPTM_HeLa_A486_30min_R1 1 ERENMDTDDERQYQDFLEDLEEDEAIRK 28 3 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 ERENMDT(1)DDERQYQDFLEDLEEDEAIRK 147.97 1.48E-09 68564000 23512 26115 17945 17193 34796 32985 42105 44713 21007 32751 TRUE FALSE FALSE 21863.93022 24045.55229 24893.78458 40026.17289 30431.56122 28915.64607 31569.88366 34532.82598 22827.90367 24549.93643 0.890590095 0.979454768 1.014006071 1.63039823 1.239578005 1.177829774 1.285945638 1.406636065 0.929855918 1 14.58343167 -5.023714215 24.79887305 1.260197118 0.950449298 0.317682407 0.186445175 698.2657588 730204.5425 0.04894675 0.085462436 9.47E-06 5.023714215 -0.309747819 EREPEAASSRGS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 EREPEAASSRGSPVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREPEAASSRGS(1)PVR;EREPEAASSRGS(1)PVR ; 172.57 1.09E-12 5030600000 570090 1118410 986410 622100 1416270 1177040 1339050 1945330 1011690 856470 TRUE FALSE FALSE 696904.5537 1249198.321 1351324.107 656083.7478 1275261.186 1238667.994 1052951.028 1468234.767 1214726.903 642967.7912 1.083887192 1.942862983 2.101697979 1.020399088 1.983398241 1.926485294 1.637641952 2.283527709 1.889250006 1 19.29438694 EREPEAASSRGS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 EREPEAASSRGSPVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREPEAAS(0.002)S(0.01)RGS(0.988)PVR;EREPEAAS(0.001)S(0.003)RGS(0.996)PVR ; 140.63 6.41E-07 4009800000 660800 613790 734270 253780 1112050 557630 815010 891060 520350 659990 TRUE FALSE FALSE 614481.3324 565151.045 1018599.008 590812.6653 972566.3195 488835.2802 611085.8777 688185.0897 565454.357 494724.2082 1.242068454 1.142355752 2.058922914 1.194226309 1.965875741 0.988096544 1.235205126 1.391047938 1.142968845 1 18.91626497 -6.298792305 24.99932187 1.181138054 1.511436704 0.264523441 0.305643104 898.0529021 601040.2119 0.105540419 0.093080114 5.03E-07 6.298792305 0.33029865 EREQNVLHMLHQILTPFLLR ddPTM_HeLa_A485_30min_R1 1 EREQNVLHMLHQILTPFLLR 20 1 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 A0A087WSW7 HELLS Lymphoid-specific helicase 0 0 67.995 0.0059043 6968200 9263.5 9691.3 8552.6 6308 6735.2 6353.6 9143.3 11289 4739.1 11053 FALSE FALSE TRUE 11324.13362 10824.61323 11716.56264 6652.590067 6064.619839 6686.264671 7189.759261 8520.35505 5690.1939 8297.690515 1.364733186 1.304533257 1.412026952 0.801739961 0.730880457 0.805798271 0.866477154 1.026834519 0.685756343 1 13.01849413 -5.262656133 24.99986857 0.840935427 1.354841365 0.840890946 0.102652284 39.06521689 802654.2524 0.028353299 0.044860695 5.46E-06 5.262656133 0.513905938 EREQNVLHMLHQILTPFLLR ddPTM_HeLa_A486_30min_R1 1 EREQNVLHMLHQILTPFLLR 20 1 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 A0A087WSW7 HELLS Lymphoid-specific helicase 0 0 51.819 0.026114 3670500 5800 8375.1 6893.5 4376.2 10288 8177.4 9449.5 9541.8 6677.1 7598.3 FALSE FALSE TRUE 5393.449951 7711.426574 9562.847814 10188.01476 8997.583108 7168.55553 7085.135153 7369.340436 7255.876404 5695.636223 0.946944246 1.353918381 1.678977982 1.788740425 1.579732756 1.258604877 1.243958511 1.293857288 1.273936066 1 12.47564129 -6.333630611 6.472876349 1.232195619 1.492222118 0.239175105 0.225159555 0.405029679 29.81909743 0.086625711 0.076366017 4.64E-07 6.333630611 0.260026499 ERESSANNSVS(ph)PSESLR ddPTM_HeLa_A485_30min_R1 2 ERESSANNSVSPSESLR 17 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ERESSANNS(0.245)VS(0.755)PSESLR;ERESSANNS(0.082)VS(0.891)PS(0.027)ESLR ; 287.09 4.88E-59 2320020000 585310 798610 846410 588530 1099690 751200 947790 1024530 863930 825290 TRUE FALSE FALSE 715510.1902 892000.4925 1159532.281 620679.9037 990201.0024 790531.6704 745286.9238 773262.4111 1037312.827 619560.3913 1.154867548 1.439731308 1.871540365 1.001806946 1.598231611 1.275955793 1.202928615 1.248082385 1.674272341 1 19.24088539 ERESSANNSVS(ph)PSESLR ddPTM_HeLa_A486_30min_R1 2 ERESSANNSVSPSESLR 17 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ERESSANNS(0.002)VS(0.996)PS(0.002)ESLR;ERESSANNS(0.029)VS(0.97)PS(0.001)ESLR ; 215.79 2.60E-34 3809900000 878500 801840 872420 222671 1071790 800690 812250 854200 747490 797010 TRUE FALSE FALSE 816921.6866 738299.2781 1210244.388 518389.3412 937356.1042 701909.0086 609016.4589 659717.3071 812283.035 597433.5083 1.367385115 1.235784849 2.025739051 0.867693783 1.568971427 1.174873854 1.019387849 1.104252269 1.359620818 1 19.18841863 -6.040411502 1.116168124 1.126186975 1.452646062 0.177775721 0.288635641 0.872533696 2.29736894 0.135528064 0.151136774 9.11E-07 6.040411502 0.326459087 EREVDEDS(ph)EPER ddPTM_HeLa_A485_30min_R1 3 EREVDEDSEPER 12 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREVDEDS(1)EPER;EREVDEDS(1)EPER;EREVDEDS(1)EPER ;; 247.17 5.22E-27 7070950000 752640 957270 849280 807410 867670 789160 914620 895000 783180 1012680 TRUE FALSE FALSE 920062.1714 1069214.399 1163464.013 851516.7638 781281.7282 830479.1973 719203.9652 675499.8467 940357.0422 760237.513 1.210229903 1.406421521 1.530395427 1.120066755 1.027681106 1.092394394 0.946025358 0.888537904 1.236925337 1 19.53609069 -5.433485333 4.94016578 1.028414147 1.382729727 0.65796071 0.112968258 0.13194396 5.356845764 0.032512883 0.048441757 3.69E-06 5.433485333 0.35431558 EREVDEDS(ph)EPER ddPTM_HeLa_A486_30min_R1 2 EREVDEDSEPER 12 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREVDEDS(1)EPER;EREVDEDS(1)EPER ; 235.26 6.15E-28 3881640000 1161510 1204790 892950 341160 1053260 985350 1051980 1016240 1027490 1187880 TRUE FALSE FALSE 1080094.147 1109318.053 1238724.154 794237.7213 921150.3095 863787.5353 788763.4773 784864.3364 1116553.66 890427.1162 1.2130068 1.245826899 1.391157268 0.891973871 1.034503883 0.970082244 0.885825985 0.881447029 1.253952895 1 19.764138 -5.26415296 24.99998318 0.980217366 1.279579984 0.597487953 0.110835577 156.4342217 1441217.735 0.03052219 0.047667662 5.44E-06 5.26415296 0.299362618 EREVDEDS(ph)EPEREVR ddPTM_HeLa_A485_30min_R1 4 EREVDEDSEPEREVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR ;;; 241.13 2.34E-41 7004500000 864740 1255210 1515540 1150680 2446280 1625500 2062620 2865550 1598650 1774030 TRUE FALSE FALSE 1057098.43 1401995.891 2076201.313 1213538.735 2202719.774 1710608.666 1621924.387 2162769.369 1919484.391 1331796.97 0.793738425 1.052709927 1.558947317 0.911204007 1.653945627 1.284436521 1.217846582 1.623948259 1.441274034 1 20.34494273 -4.544069812 4.856191822 1.348554145 0.843278367 0.350004541 0.236636976 0.168675727 10.38080682 0.057757126 0.182536892 2.86E-05 4.544069812 -0.505275777 EREVDEDS(ph)EPEREVR ddPTM_HeLa_A486_30min_R1 4 EREVDEDSEPEREVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR ;;; 230.06 1.89E-34 2954490000 1265960 1474800 1667990 829520 2941290 1618410 2182500 2447770 1387120 1593710 TRUE FALSE FALSE 1177222.741 1357931.477 2313880.398 1931164.482 2572365.982 1418747.029 1636415.416 1890466.205 1507356.678 1194634.643 0.985424915 1.136691862 1.936893771 1.616531459 2.153265852 1.187599102 1.369804087 1.582463908 1.261772114 1 20.18813803 -8.001469131 3.561954965 1.000889628 1.509572052 0.175163666 0.339439029 0.369976513 12.10079639 0.342979409 0.090749951 9.97E-09 8.001469131 0.508682423 ERFESDRDRDHER ddPTM_HeLa_A485_30min_R1 1 ERFESDRDRDHER 13 3 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 0 0 111.83 0.00020122 123520000 26258 44462 39862 13943 45733 30749 15375 75773 17056 22533 FALSE FALSE TRUE 32099.00151 49661.44413 54608.6126 14704.67078 41179.66194 32358.97009 12090.00565 57189.55294 20478.98275 16915.93779 1.897559681 2.935778362 3.228234419 0.869279077 2.434370619 1.912927944 0.714710931 3.380808895 1.210632423 1 14.04609554 -5.247552596 24.99149062 1.750458636 2.712049542 0.243307293 0.826796292 1205.30253 2169131.551 0.216262818 0.372122984 5.66E-06 5.247552596 0.961590905 ERFS(ph)PPR ddPTM_HeLa_A485_30min_R1 9 ERFSPPR 7 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR ;;;;;;;; 92.239 0.0030629 15352730000 1237708 1653776 1412165 1248072 1320592 1353934 1410718 1223963 1297803 1554163 TRUE FALSE FALSE 1513031.875 1847170.717 1934583.599 1316251.013 1189109.224 1424823.891 1109306.575 923784.1552 1558260.158 1166738.766 1.296804322 1.583191345 1.658112042 1.128145435 1.019173493 1.221202151 0.950775449 0.791766059 1.335569026 1 20.15405015 -5.369087986 5.128892544 1.048839938 1.517636843 0.615918835 0.162970877 0.142636171 5.588690758 0.046282744 0.069600803 4.27E-06 5.369087986 0.468796904 ERFS(ph)PPR ddPTM_HeLa_A486_30min_R1 7 ERFSPPR 7 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR;ERFS(1)PPR ;;;;;; 90.142 0.0032936 18775880000 1690739 1772922 1191506 428398 1327354 1483440 1421191 1422123 1364429 1764088 TRUE FALSE FALSE 1572226.927 1632429.204 1652889.033 997332.194 1160864.884 1300428.255 1065593.98 1098336.638 1482698.804 1322348.883 1.188965293 1.234492066 1.249964404 0.754212604 0.877880943 0.983422962 0.80583422 0.830595202 1.121261434 1 20.33467143 -5.247667868 24.91865473 0.900723143 1.225475773 0.66655406 0.101614594 431.1229251 780087.6764 0.027256275 0.046895538 5.65E-06 5.247667868 0.32475263 ERFS(ph)PPRHELS(ph)PPQK ddPTM_HeLa_A485_30min_R1 2 ERFSPPRHELSPPQK 15 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 2 0 ERFS(1)PPRHELS(1)PPQK;ERFS(1)PPRHELS(1)PPQK ; 91.276 0.00072794 1247880000 466170 476890 459960 698190 689620 551040 733190 725380 551350 933770 TRUE FALSE FALSE 569867.9082 532658.1371 630118.3445 736330.3518 620959.0114 579891.6023 576537.9669 547479.4176 662000.8877 700998.3238 0.812937619 0.759856506 0.898887092 1.050402443 0.885820965 0.827236789 0.822452704 0.78099961 0.944368717 1 19.41905147 -4.768208401 24.93973431 0.892764921 0.786397056 0.248093496 0.078889568 217.0022204 799532.7186 0.022100463 0.047716776 1.71E-05 4.768208401 -0.106367865 ERFS(ph)PPRHELS(ph)PPQK ddPTM_HeLa_A486_30min_R1 3 ERFSPPRHELSPPQK 15 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 2 0 ERFS(1)PPRHELS(1)PPQK;ERFS(1)PPRHELS(1)PPQK;ERFS(1)PPRHELS(1)PPQK ;; 128.01 1.46E-05 1866960000 578950 604600 431081 258436 646400 721800 786900 790660 582100 729570 TRUE FALSE FALSE 538368.5947 556689.2941 598007.1079 601652.0686 565322.4846 632751.6547 590009.297 610643.978 632556.8967 546880.9233 0.984434768 1.017935112 1.093486868 1.100151867 1.033721347 1.157019065 1.078862458 1.116594037 1.15666294 1 19.06086721 -4.667630179 2.967302479 1.096960405 0.988562928 0.3875734 0.046225278 0.240515237 4.076514618 0.011734103 0.040006541 2.15E-05 4.667630179 -0.108397477 ERFS(ph)PPRHELS(ph)PPQKR ddPTM_HeLa_A485_30min_R1 7 ERFSPPRHELSPPQKR 16 3 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 2 0 ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR ;;;;;; 90.308 0.00061167 49563660000 1282737 1575919 1311828 1595804 2237297 1910077 2548899 3174830 1602032 2106254 TRUE FALSE FALSE 1568077.42 1760209.018 1797127.767 1682978.732 2014543.855 2010085.678 2004305.906 2396197.965 1923545.128 1581203.641 0.99169859 1.113208301 1.136556811 1.064365581 1.274057182 1.271237699 1.2675824 1.515426542 1.216506893 1 20.59259175 -5.768235303 18.81773015 1.284434987 1.083374876 0.327785222 0.123257743 7.750284457 21460.17245 0.036671214 0.042849019 1.71E-06 5.768235303 -0.201060111 ERFS(ph)PPRHELS(ph)PPQKR ddPTM_HeLa_A486_30min_R1 8 ERFSPPRHELSPPQKR 16 3 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 2 0 ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR;ERFS(1)PPRHELS(1)PPQKR ;;;;;;; 132.36 6.17E-06 38402090000 4568330 4282971 3427808 2149777 6149912 4982238 6065181 6509168 3742575 5522398 TRUE FALSE FALSE 4248113.658 3943572.78 4755147.057 5004789.5 5378532.691 4367580.131 4547608.563 5027172.541 4066984.414 4139553.596 1.026225065 0.952656534 1.148710108 1.209016717 1.299302586 1.055084813 1.098574631 1.214423832 0.982469322 1 21.98104377 -7.785233078 24.90265564 0.991234402 1.125844277 0.240273621 0.095497026 406.9033506 425855.3001 0.100062599 0.025891959 1.64E-08 7.785233078 0.134609876 ERFS(ph)PPRHELSPPQK ddPTM_HeLa_A485_30min_R1 4 ERFSPPRHELSPPQK 15 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK;ERFS(0.999)PPRHELS(0.001)PPQK ;;; 109.72 0.00010856 1904410000 1142570 1093810 1224240 1596060 1758690 1243420 1848670 1518840 1406770 2381280 TRUE FALSE FALSE 1396730.755 1221721.565 1677137.321 1683248.716 1583588.648 1308523.549 1453686.552 1146342.109 1689095.835 1787670.72 0.781313213 0.683415324 0.938169039 0.941587675 0.885839115 0.731971237 0.813173554 0.641249026 0.944858478 1 20.76964959 ERFS(ph)PPRHELSPPQK ddPTM_HeLa_A486_30min_R1 4 ERFSPPRHELSPPQK 15 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK;ERFS(1)PPRHELSPPQK ;;; 104.88 0.00014324 2092630000 1725050 1877370 1433630 474293 2227320 2080240 2355370 2308840 1759210 2024360 TRUE FALSE FALSE 1604132.903 1728600.364 1988769.93 1104178.073 1947948.757 1823601.139 1766031.513 1783167.534 1911699.739 1517447.08 1.057126093 1.139150345 1.310602496 0.727655078 1.283701279 1.201756004 1.163817531 1.175110195 1.25981312 1 20.53321477 ERFS(ph)PPRHELSPPQKR ddPTM_HeLa_A485_30min_R1 4 ERFSPPRHELSPPQKR 16 3 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR ;;; 175.85 1.13E-12 14872290000 789812 1177880 969761 947526 1480330 1318350 1633560 2024330 1071350 1431870 TRUE FALSE FALSE 965502.9546 1315622.82 1328515.949 999286.9461 1332943.147 1387376.767 1284536.561 1527859.893 1286360.118 1074931.161 0.898199801 1.223913557 1.235907933 0.929628783 1.240026521 1.290665689 1.194994255 1.421356036 1.196690695 1 20.03581284 -5.94868562 24.99704983 1.247676081 1.093276332 0.200298492 0.141766142 158.4822554 77201.42059 0.042596735 0.048300149 1.13E-06 5.94868562 -0.154399749 ERFS(ph)PPRHELSPPQKR ddPTM_HeLa_A486_30min_R1 5 ERFSPPRHELSPPQKR 16 3 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR;ERFS(1)PPRHELSPPQKR ;;;; 168.64 4.27E-12 12132660000 2213630 2004540 2367600 677159 3423820 2153450 2582270 2837520 2043460 2341380 TRUE FALSE FALSE 2058465.968 1845692.95 3284398.127 1576460.374 2994372.57 1887779.234 1936158.734 2191478.639 2220588.758 1755083.208 1.172859474 1.051627035 1.871363199 0.898225432 1.706114306 1.075606686 1.103172046 1.248646576 1.265232752 1 20.743108 ERGT(ph)PPVDPK ddPTM_HeLa_A485_30min_R1 4 ERGTPPVDPK 10 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 ERGT(1)PPVDPK;ERGT(1)PPVDPK;ERGT(1)PPVDPK;ERGT(1)PPVDPK ;;; 69.03 0.017326 5707300000 6208300 5807900 4164640 7344400 7074300 6543000 8744500 9256300 5432900 9942000 TRUE FALSE FALSE 7589314.917 6487083.383 5705313.641 7745605.975 6369957.853 6885581.363 6876166.139 6986177.912 6523233.196 7463642.369 1.016837965 0.869157854 0.764414124 1.037778285 0.853465043 0.922549745 0.921288266 0.936027956 0.874001308 1 22.83144843 -11.32310425 2.134407259 1.447539091 0.908565967 0.113099978 0.074895792 7990459.468 885247.9153 17289992.88 0.018880207 4.75E-12 11.32310425 -0.538973124 ERGT(ph)PPVDPK ddPTM_HeLa_A486_30min_R1 3 ERGTPPVDPK 10 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 ERGT(1)PPVDPK;ERGT(1)PPVDPK;ERGT(1)PPVDPK ;; 69.716 0.016809 4430800000 5944900 5506700 2790950 2404570 5415100 5571700 6795700 6512700 4246200 7284000 TRUE FALSE FALSE 5528193.209 5070329.037 3871680.584 5597960.48 4735887.664 4884320.303 5095343.982 5029900.381 4614264.035 5460038.989 1.012482369 0.928625061 0.709093945 1.025260166 0.867372499 0.89455777 0.93320652 0.921220598 0.845097268 1 22.38047982 -11.10401608 2.327863632 1.170005986 0.902649562 0.104011126 0.084342123 18056238.92 5223697.557 16243170.38 0.020491487 7.87E-12 11.10401608 -0.267356424 ERGVGQADWT(ph)PDLGLR ddPTM_HeLa_A485_30min_R1 2 ERGVGQADWTPDLGLR 16 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 ERGVGQADWT(1)PDLGLR;ERGVGQADWT(1)PDLGLR ; 81.665 0.003918 230728000 92813 125356 113790 102756 158311 123115 153280 175446 100012 133854 TRUE FALSE FALSE 113458.9316 140015.2937 155885.6562 108369.3001 142549.001 129561.111 120530.4758 132417.5934 120083.491 100486.6612 1.129094452 1.393371937 1.551306953 1.078444629 1.418586301 1.28933641 1.199467416 1.317762893 1.195019215 1 16.61664448 -8.865133093 0.438359257 0.962585779 1.325585886 0.316450464 0.13267122 4.243413915 1.176160577 0.418211413 0.080850205 1.36E-09 8.865133093 0.363000108 ERGVGQADWT(ph)PDLGLR ddPTM_HeLa_A486_30min_R1 2 ERGVGQADWTPDLGLR 16 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 ERGVGQADWT(1)PDLGLR;ERGVGQADWT(1)PDLGLR ; 99.569 0.00063764 107406000 155362 141037 123532 48354 168339 129824 145079 167243 112570 165563 TRUE FALSE FALSE 144471.9261 129860.7145 171366.8987 112570.5557 147224.3529 113807.6348 108778.6997 129165.4198 122327.6582 124104.9472 1.164110935 1.046378226 1.380822462 0.907059374 1.186289155 0.917027382 0.876505749 1.040775753 0.985679145 1 16.9212011 -5.285698286 24.99942192 0.990025321 1.182031374 0.423329993 0.111603352 766.7541988 790157.9725 0.031067116 0.046104053 5.18E-06 5.285698286 0.192006054 ERHAS(ph)EMR ddPTM_HeLa_A485_30min_R1 4 ERHASEMR 8 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 1 0 ERHAS(1)EMR;ERHAS(1)EMR;ERHAS(1)EMR;ERHAS(1)EMR ;;; 64.82 0.011729 4066360000 761340 1158470 1137990 694490 1269170 1099920 1071950 1466190 1040870 921000 TRUE FALSE FALSE 930697.4564 1293942.989 1558979.857 732428.2302 1142806.978 1157510.11 842919.1255 1106604.604 1249763.062 691411.6497 1.346082984 1.871450951 2.254778116 1.059322952 1.652860461 1.674125842 1.219127745 1.600500373 1.807552797 1 19.39918539 -5.263273867 24.9999685 1.466128553 1.828838688 0.227746419 0.327540448 261.583886 3564827.093 0.09003077 0.141656027 5.45E-06 5.263273867 0.362710135 ERHAS(ph)EMR ddPTM_HeLa_A486_30min_R1 2 ERHASEMR 8 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 1 0 ERHAS(1)EMR;ERHAS(1)EMR ; 62.633 0.013942 2223400000 755460 746940 648460 200242 813670 631840 690470 745410 634270 739110 TRUE FALSE FALSE 702506.1552 687749.7541 899561.0784 466173.4957 711611.9214 553890.0049 517707.103 575696.4152 689249.0343 554032.0452 1.267988307 1.241353745 1.623662541 0.841419733 1.284423758 0.999743624 0.934435305 1.039103099 1.24405987 1 19.0796099 -5.266787882 24.99968846 1.05363592 1.364036751 0.478480259 0.156985114 386.8377364 1808136.982 0.043074951 0.066070504 5.41E-06 5.266787882 0.310400831 ERHPGSFDVVHVK ddPTM_HeLa_A485_30min_R1 2 ERHPGSFDVVHVK 13 1 P62701;C9JEH7;P22090 P62701 RPS4X;RPS4Y1 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 0 0 ; ; 180.11 4.18E-17 646020000 427510 579120 455400 361230 589100 546690 675740 850920 497410 611770 FALSE FALSE TRUE 522608.1246 646843.0463 623871.4108 380963.0802 530447.1355 575313.8431 531362.6287 642230.5358 597235.6245 459266.9978 1.137917872 1.408424837 1.358406796 0.829502407 1.154986398 1.252678389 1.156979777 1.398381636 1.300410496 1 18.80897359 ERHPGSFDVVHVK ddPTM_HeLa_A486_30min_R1 1 ERHPGSFDVVHVK 13 1 P62701;C9JEH7;P22090 P62701 RPS4X;RPS4Y1 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 0 0 157.86 1.16E-08 248160000 76545 64396 64806 13368 97641 63921 79437 71312 65883 71598 FALSE FALSE TRUE 71179.59078 59293.02643 89900.61876 31121.37958 85393.95531 56035.07692 59561.0224 55075.81433 71593.79149 53669.39478 1.326260359 1.104782841 1.675081658 0.579872005 1.591110831 1.044078793 1.109776301 1.026205243 1.333977992 1 15.711812 -1 0.124990765 0.995097065 1.976636213 0.053723965 0.292555825 304.0866627 2.598059697 1.686681069 52.27412286 0.1 1 0.981539149 ERHPQSKY(ph)LT(ph)ILQK ddPTM_HeLa_A486_30min_R1 2 ERHPQSKYLTILQK 14 2 E7EQW0;B7ZLE8;A0A0G2JS53;Q13075;A0A0G2JNC7;Q13075-2 E7EQW0 NAIP Baculoviral IAP repeat-containing protein 1 2 0 ERHPQS(0.352)KY(0.648)LT(1)ILQK;ERHPQS(0.376)KY(0.628)LT(0.996)ILQK ; 60.489 0.022933 303760000 417280 863190 935090 21050.8 888710 332160 164960 314774 707260 71314 TRUE FALSE FALSE 388030.8268 794787.6807 1297181.891 49007.32625 777239.7049 291181.4764 123685.2632 243106.8317 768565.8663 53456.51022 7.25881329 14.86793054 24.26611623 0.916770026 14.53966414 5.447072305 2.313754914 4.547749762 14.37740442 1 15.70607804 -5.274955014 24.98309917 6.4698122 15.40465187 0.337318926 5.963129821 893.3991203 1651409.824 1.669661699 2.491933855 5.31E-06 5.274955014 8.934839669 ERHPS(ph)WR ddPTM_HeLa_A485_30min_R1 12 ERHPSWR 7 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR ;;;;;;;;;;; 130.98 0.00080886 2.60E+11 18777256 26929543 25500264 17188769 27368060 23670193 27574970 31664780 22244510 21138272 TRUE FALSE FALSE 22954191.82 30078718.8 34933872.81 18127747.93 24643199.85 24909527.7 21683352.39 23898943.06 26708779.12 15868889.81 1.446490088 1.895451992 2.201406225 1.142345063 1.552925261 1.569708278 1.366406387 1.506024892 1.68309059 1 23.91969786 -11.65071006 0.121327062 4.82E-15 1.937134412 0.309775961 0.27239012 95.59598974 1.359457247 29.83591906 3.131326442 2.24E-12 11.65071006 1.937134412 ERHPS(ph)WR ddPTM_HeLa_A486_30min_R1 11 ERHPSWR 7 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR;ERHPS(1)WR ;;;;;;;;;; 131.52 0.00080475 2.58E+11 16767210 16668960 14644776 5083754 17966860 14075259 15966925 16523481 13244035 16109120 TRUE FALSE FALSE 15591915.16 15348050.9 20315625.47 11835236.23 15713288.88 12338796.65 11971831.48 12761445.08 14392038.62 12075291.5 1.291224743 1.271029433 1.68241284 0.980120126 1.301276154 1.021821846 0.99143209 1.056822941 1.191858484 1 23.52555468 -5.283601923 24.99244344 1.083389491 1.400503105 0.545909267 0.1407087 602.8513673 679827.0908 0.039346437 0.058414024 5.20E-06 5.283601923 0.317113614 ERHPS(ph)WRS(ph)EETQER ddPTM_HeLa_A485_30min_R1 1 ERHPSWRSEETQER 14 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 ERHPS(0.998)WRS(0.969)EET(0.033)QER 79.193 0.0034873 978390000 189080 245280 267910 305050 499990 272340 375800 444280 318770 415520 TRUE FALSE FALSE 231140.1937 273963.3623 367021.0577 321714.1091 450209.24 286599.3013 295507.26 335319.6334 382744.2151 311938.5111 0.740979986 0.878260787 1.176581424 1.031338221 1.443262771 0.918768575 0.947325353 1.074954267 1.226986093 1 18.25090215 -4.593213229 4.053247729 1.102110677 0.765501271 0.404519265 0.145976217 0.201254495 6.329368756 0.038413613 0.120847915 2.55E-05 4.593213229 -0.336609406 ERHPS(ph)WRS(ph)EETQER ddPTM_HeLa_A486_30min_R1 1 ERHPSWRSEETQER 14 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 ERHPS(1)WRS(0.787)EET(0.213)QER 93.029 0.00076787 107470000 34233 63823 102460 32272 140230 63014 83888 94901 59082 40303 TRUE FALSE FALSE 31833.44348 58765.43304 142135.256 75130.84694 122641.0458 55239.97336 62898.33512 73294.11397 64203.27533 30210.86647 1.05370839 1.945175359 4.704772573 2.486881567 4.059501104 1.828480273 2.081977198 2.42608447 2.125171596 1 14.88277994 ERHPS(ph)WRSEET(ph)QER ddPTM_HeLa_A486_30min_R1 2 ERHPSWRSEETQER 14 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 ERHPS(0.983)WRS(0.154)EET(0.862)QER;ERHPS(0.999)WRS(0.098)EET(0.902)QER ; 96.234 0.0049793 1951160000 510948 914092 1610960 684252 2679890 1421268 1710014 2004950 1151612 795213 TRUE FALSE FALSE 475133.1837 841656.0209 2234766.855 1592973.236 2343753.207 1245926.405 1282150.411 1548466.653 1251434.655 596086.4888 0.797087659 1.411969633 3.74906477 2.672386082 3.931901244 2.090177227 2.150946942 2.597721441 2.099417918 1 19.18516215 -8.14737349 3.136192664 1.000179846 2.472645657 0.184373427 0.894458008 1.160694197 20.63096383 0.907947536 0.241553336 7.12E-09 8.14737349 1.472465811 ERHPSWR ddPTM_HeLa_A485_30min_R1 1 ERHPSWR 7 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 100.02 0.0058397 472620000 116470 175610 190860 95097 179380 165340 188860 207170 180000 146670 FALSE FALSE TRUE 142378.3497 196146.0619 261467.0563 100291.9083 161520.2974 173996.9467 148508.5182 156361.2327 216124.3489 110107.8683 1.293080612 1.781399141 2.374644614 0.910851421 1.46692784 1.580240808 1.348754821 1.420073199 1.962842005 1 16.74855804 -5.266743833 24.99516896 1.411877816 1.812877212 0.223154196 0.366936349 703.5895986 3315393.76 0.102210796 0.156744892 5.41E-06 5.266743833 0.400999396 ERHPSWR ddPTM_HeLa_A486_30min_R1 1 ERHPSWR 7 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 114.89 0.010613 0 126770 126970 132340 33150 149000 102500 126840 133760 99079 125070 FALSE FALSE TRUE 117884.0776 116908.4348 183585.5922 77174.87531 130311.0306 89854.59214 95103.29042 103305.768 107667.2475 93751.65793 1.257407925 1.247001252 1.958211686 0.823184112 1.389959746 0.958432033 1.014417158 1.101908705 1.14843033 1 16.51655658 -5.286987398 24.99988926 1.073904763 1.463486624 0.417728771 0.229240491 749.3875631 733307.8823 0.062990685 0.093465551 5.16E-06 5.286987398 0.389581861 ERIGELGAPEVWGLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ERIGELGAPEVWGLSPK 17 1 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 ERIGELGAPEVWGLS(1)PK 81.922 0.0013671 88340000 108460 94652 50750 67123 69534 96112 140430 124340 69721 209600 TRUE FALSE FALSE 100857.5141 87151.4308 70401.75913 156265.7362 60812.39734 84254.67864 105292.9287 96030.49632 75764.47242 157114.7957 0.641935176 0.554699068 0.448091211 0.994595929 0.387057101 0.536261898 0.670165583 0.611212304 0.482223664 1 17.26145952 -10.22185532 4.864564302 1.00006663 0.593553203 0.374574552 0.158222444 0.000110456 1.77E-05 0.148000112 0.035889436 6.00E-11 10.22185532 -0.406513427 ERIQQFDDGGS(ph)DEEDIWEEK ddPTM_HeLa_A485_30min_R1 1 ERIQQFDDGGSDEEDIWEEK 20 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 ERIQQFDDGGS(1)DEEDIWEEK 96.679 0.00016867 204360000 84246 83351 61059 128640 116140 96262 141350 133140 69179 169540 TRUE FALSE FALSE 102986.2321 93098.17439 83647.26498 135667.2775 104576.6938 101302.1295 111149.4178 100487.2062 83062.59075 127276.7982 0.809151656 0.73146226 0.657207489 1.065923086 0.821647742 0.795919845 0.873288921 0.789517082 0.652613767 1 16.95760992 -11.39531244 2.336239151 2.646704447 0.803681239 0.22531342 0.11123 14751541.06 1757111.342 128276663.2 0.029762375 4.02E-12 11.39531244 -1.843023208 ERKERLMR ddPTM_HeLa_A485_30min_R1 1 ERKERLMR 8 3 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 0 48.794 0.026809 205520000 99672 51077 58757 163030 143720 86251 142550 127270 91728 224800 FALSE FALSE TRUE 121843.6925 57050.01084 80493.65938 171935.9161 129410.7322 90766.96899 112093.028 96056.83295 110136.9682 168761.4971 0.721987507 0.338051106 0.476966967 1.01881009 0.766826168 0.537841691 0.664209727 0.569186897 0.652619052 1 17.36462627 -11.57113596 1.717701156 4.488762826 0.635628871 0.281299102 0.173293647 3945182.393 210674.2656 53471208.71 0.055367691 2.68E-12 11.57113596 -3.853133956 ERKNS(ph)ITEIS(ph)DNEDDLLEYHRR ddPTM_HeLa_A486_30min_R1 1 ERKNSITEISDNEDDLLEYHRR 22 3 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 ERKNS(0.976)IT(0.03)EIS(0.993)DNEDDLLEYHRR 56.903 0.012721 121460000 8119.4 7703.4 7639.4 4588.9 12197 9043.8 14766 11468 7574.6 10778 TRUE FALSE FALSE 7550.271989 7092.954529 10597.58027 10683.19111 10667.13853 7928.067907 11071.39062 8856.986745 8231.172427 8079.118647 0.934541541 0.877936671 1.311724797 1.322321354 1.320334432 0.981303562 1.370371089 1.096281306 1.01882059 1 12.9799822 -4.749756348 24.95120907 1.191217255 0.906238939 0.366188351 0.141929936 216.5965207 462571.9779 0.036240076 0.094168605 1.78E-05 4.749756348 -0.284978316 ERLGS(ph)FGSITR ddPTM_HeLa_A486_30min_R1 4 ERLGSFGSITR 11 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 ERLGS(1)FGSITR;ERLGS(1)FGSITR;ERLGS(0.999)FGS(0.001)ITR;ERLGS(0.983)FGS(0.016)IT(0.001)R ;;; 187.16 5.81E-11 5208620000 616364 554968 495435 224871 767246 474432 670776 709241 410479 635397 TRUE FALSE FALSE 573160.0665 510990.3145 687280.7002 523511.0524 671010.8524 415901.4035 502940.7501 547762.3069 446059.6502 476289.4555 1.203386008 1.07285666 1.442989536 1.099144746 1.408829956 0.873211445 1.055956088 1.150061797 0.936530602 1 18.86147908 -6.265750293 24.99733656 1.01583111 1.238700647 0.468369294 0.128612841 362.5666045 2102378.306 0.043066933 0.039294765 5.42E-07 6.265750293 0.222869537 ERLNS(ph)SENGEDR ddPTM_HeLa_A486_30min_R1 2 ERLNSSENGEDR 12 1 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 ERLNS(0.996)S(0.004)ENGEDR;ERLNS(0.822)S(0.178)ENGEDR ; 178.51 4.46E-13 437170000 518180 497390 439430 147017 549950 405080 487190 469360 397420 494010 TRUE FALSE FALSE 481858.2579 457975.0049 609589.0643 342263.0058 480970.1429 355105.3482 365289.909 362496.9741 431868.6856 370306.6805 1.301241061 1.236745187 1.646173554 0.924269055 1.298842738 0.958949343 0.986452387 0.978910166 1.166246002 1 18.49836105 -5.27754078 24.9963381 1.048506819 1.378922485 0.55115045 0.144466436 601.1114092 933183.5702 0.039916022 0.059412643 5.28E-06 5.27754078 0.330415667 QELS(ph)FAARSFYYK ddPTM_HeLa_A485_30min_R1 1 QELSFAARSFYYK 13 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 QELS(0.27)FAARS(0.27)FY(0.23)Y(0.23)K 47.189 0.037148 770130000 405700 257500 240550 302530 472270 182540 139530 114390 116710 139490 TRUE FALSE FALSE 495946.5654 287612.385 329539.4551 319056.4479 425249.1406 192097.5121 109718.2756 86335.67314 140132.6265 104717.7101 4.73603333 2.746549602 3.146931448 3.046824147 4.060909469 1.83443194 1.047752816 0.824461049 1.338194144 1 16.67614593 -6.448547793 3.77412117 1.064167854 3.44709383 0.824999045 0.545846058 0.097994512 2.674003901 0.203497108 0.172224856 3.56E-07 6.448547793 2.382925976 up ERLS(ph)PENR ddPTM_HeLa_A485_30min_R1 1 ERLSPENR 8 1 A0A087WX12;A0A087X032;A0A087WTH3;A0A087X251;A0A087X0T6;Q2M2Z5-5;Q2M2Z5-2;Q2M2Z5-3;Q2M2Z5-4;Q2M2Z5 A0A087WX12 KIZ Centrosomal protein kizuna 1 0 ERLS(1)PENR 65.5 0.005175 0 60421 90076 100110 82849 114860 85095 107650 112670 88238 106130 TRUE FALSE FALSE 73861.443 100609.6046 137144.8549 87374.83109 103424.1351 89550.44262 84649.69808 85037.50584 105946.5572 79673.74418 0.927048726 1.262769883 1.721330613 1.096657776 1.298095579 1.123964281 1.062454124 1.067321571 1.329754969 1 16.28181675 -6.268555242 20.65277798 1.117516153 1.277692572 0.108487524 0.204359158 118.3731347 343554.9671 0.072620415 0.065730323 5.39E-07 6.268555242 0.160176419 ERLS(ph)PENR ddPTM_HeLa_A486_30min_R1 2 ERLSPENR 8 1 A0A087WX12;A0A087X032;A0A087WTH3;A0A087X251;A0A087X0T6;Q2M2Z5-5;Q2M2Z5-2;Q2M2Z5-3;Q2M2Z5-4;Q2M2Z5 A0A087WX12 KIZ Centrosomal protein kizuna 1 0 ERLS(1)PENR;ERLS(1)PENR ; 107.09 0.0006594 520350000 181532 200464 193772 75091 256800 189782 199737 227094 170633 204479 TRUE FALSE FALSE 168807.5442 184578.5026 268805.7078 174815.6429 224589.7494 166368.6264 149760.69 175389.6536 185423.6058 153276.1275 1.101329653 1.204222116 1.75373499 1.140527529 1.46526242 1.08541773 0.977064677 1.144272474 1.209735716 1 17.22577349 -6.282101949 23.09672589 1.085675471 1.338539693 0.314170333 0.184370726 393.2160374 439536.4869 0.065347962 0.0577215 5.22E-07 6.282101949 0.252864222 ERLS(ph)WPK ddPTM_HeLa_A485_30min_R1 5 ERLSWPK 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK ;;;; 98.048 0.0024235 4886830000 1409380 1385740 1068635 1746920 1685650 1518200 2228480 2202270 1278520 2340060 TRUE FALSE FALSE 1722891.719 1547790.239 1463967.556 1842349.816 1517820.767 1597690.604 1752347.043 1662159.829 1535107.237 1756726.108 0.980740089 0.8810652 0.833349917 1.0487405 0.864005357 0.909470519 0.997507258 0.946169026 0.873845519 1 20.74445785 -11.92467233 1.966706582 5.871182824 0.926029062 0.106997943 0.064048086 2074199.476 98466.41176 45388795.21 0.016665812 1.19E-12 11.92467233 -4.945153762 ERLS(ph)WPK ddPTM_HeLa_A486_30min_R1 7 ERLSWPK 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK;ERLS(1)WPK ;;;;;; 109.66 0.0014813 8169130000 1372285 1379047 870588 661507 1409474 1486439 1917390 1808860 1101293 2013520 TRUE FALSE FALSE 1276094.908 1269766.293 1207702.989 1540021.727 1232684.628 1303057.269 1437638.742 1397022.065 1196753.964 1509321.486 0.845475878 0.841282858 0.800162855 1.020340425 0.816714424 0.863339773 0.952506643 0.925596089 0.792908585 1 20.5254687 -14 0.159608901 1.424101963 0.845211356 0.214428577 0.069802716 216.6961524 1.988009208 29.5680795 0.299253504 1.00E-14 14 -0.578890607 ERPAEPLT(ph)PPPSYGHQPQTGSGESSGASGDKDHLYSTVCKPR ddPTM_HeLa_A485_30min_R1 2 ERPAEPLTPPPSYGHQPQTGSGESSGASGDKDHLYSTVCKPR 42 3 O43294-2;O43294;H3BSN4;H3BS04;H3BN49 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 ERPAEPLT(0.999)PPPS(0.001)YGHQPQTGSGESSGASGDKDHLYSTVCKPR;ERPAEPLT(0.792)PPPS(0.194)Y(0.014)GHQPQTGSGESSGASGDKDHLYSTVCKPR ; 98.057 9.06E-06 9924600000 286210 335620 241495 145455 395260 275654 367870 363230 316670 317180 TRUE FALSE FALSE 349876.4271 374867.8395 330834.0499 153400.8383 355906.5266 290086.8172 289271.5693 274147.273 380222.7643 238112.8633 1.469372222 1.574328385 1.389400158 0.644235831 1.494696766 1.218274449 1.214850661 1.151333318 1.596817405 1 17.86128603 -5.008083251 24.79540481 1.19513141 1.511853916 0.236968876 0.24519456 490.2236884 1503780.773 0.063437793 0.123105354 9.82E-06 5.008083251 0.316722505 ERPAGQLS(ph)R ddPTM_HeLa_A485_30min_R1 4 ERPAGQLSR 9 1 A0A087WWA7;O14640-2;O14640 A0A087WWA7 DVL1 Segment polarity protein dishevelled homolog DVL-1 1 0 ERPAGQLS(1)R;ERPAGQLS(1)R;ERPAGQLS(1)R;ERPAGQLS(1)R ;;; 128.36 0.00012803 1281220000 456477 619376 564906 410451 694040 539192 624374 686780 492610 537372 TRUE FALSE FALSE 558018.7338 691806.6353 773888.2371 432872.8988 624938.9407 567423.2594 490971.3942 518346.1282 591472.3085 403415.05 1.383237273 1.714875623 1.918342504 1.073021194 1.549121533 1.406549556 1.217037873 1.284895366 1.46616322 1 18.62190538 -5.522755215 0.051410167 3.02E-06 2.977233838 0.342270107 0.215853358 154.8451407 2.054632325 46.60021 72.86245558 3.00E-06 5.522755215 2.977230814 ERPAGQLS(ph)R ddPTM_HeLa_A486_30min_R1 4 ERPAGQLSR 9 1 A0A087WWA7;O14640-2;O14640 A0A087WWA7 DVL1 Segment polarity protein dishevelled homolog DVL-1 1 0 ERPAGQLS(1)R;ERPAGQLS(1)R;ERPAGQLS(1)R;ERPAGQLS(1)R ;;; 96.604 0.0012063 1230580000 548390 655553 531808 188683 662624 456710 564599 544803 484517 562693 TRUE FALSE FALSE 509950.6929 603604.5928 737738.2999 439263.5595 579511.5192 400365.7637 423330.3585 420763.2499 526515.3237 421791.0103 1.209012711 1.431051346 1.749061222 1.04142466 1.373930466 0.949204118 1.003649552 0.997563342 1.24828484 1 18.68616882 -5.751306332 1.545028488 1.049284589 1.436734437 0.413845518 0.186766626 0.365828393 1.814314451 0.068157182 0.093697904 1.77E-06 5.751306332 0.387449848 ERPDLEAPAPGS(ph)PFR ddPTM_HeLa_A485_30min_R1 3 ERPDLEAPAPGSPFR 15 1 H0YBA8;Q9NQT8-2;Q9NQT8 H0YBA8 KIF13B Kinesin-like protein KIF13B 1 0 ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR ;; 134.58 5.61E-06 897218000 350746 514166 488483 339919 496953 496886 512681 564966 425056 462837 TRUE FALSE FALSE 428768.2376 574293.2411 669193.1892 358487.9142 447474.6144 522902.1826 403142.5161 426407.2027 510360.8404 347460.2538 1.234006575 1.652831467 1.925956082 1.031737905 1.287844033 1.504926612 1.160255056 1.227211452 1.46883229 1 18.40648843 -9.618284957 0.057264861 5.39E-09 2.254629854 0.211622143 0.243768785 205.0733805 2.663180992 67.90512594 38.41275371 2.41E-10 9.618284957 2.254629848 ERPDLEAPAPGS(ph)PFR ddPTM_HeLa_A486_30min_R1 2 ERPDLEAPAPGSPFR 15 1 H0YBA8;Q9NQT8-2;Q9NQT8 H0YBA8 KIF13B Kinesin-like protein KIF13B 1 0 ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR ; 205.21 9.10E-26 983220000 436290 462770 427610 116354 548760 405750 427540 446510 423390 458760 TRUE FALSE FALSE 405708.324 426098.4198 593192.0438 270877.9922 479929.4038 355692.6904 320564.9699 344849.4202 460089.7861 343883.51 1.179784178 1.239077791 1.724979613 0.787702767 1.395616219 1.034340642 0.932190584 1.00280883 1.337923374 1 18.39156041 -5.269863359 24.9992986 1.076529328 1.367060261 0.302425409 0.216108145 798.1181799 2368522.236 0.059685019 0.090216965 5.37E-06 5.269863359 0.290530933 ERPES(ph)PMVPSEQVVEEAVPLPPQALTTSQDGHR ddPTM_HeLa_A485_30min_R1 2 ERPESPMVPSEQVVEEAVPLPPQALTTSQDGHR 33 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 ERPES(0.987)PMVPS(0.013)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.971)PMVPS(0.029)EQVVEEAVPLPPQALTTSQDGHR ; 82.512 0.00026822 552160000 84274 112081 126203 69394 164553 96350 126566 130584 106067 117842 TRUE FALSE FALSE 103020.4606 125187.898 172890.7414 73184.81851 148169.5255 101394.737 99524.14015 98558.06925 127353.674 88466.15812 1.164518306 1.415093643 1.954315018 0.827263442 1.674872388 1.146141521 1.124996748 1.114076516 1.43957505 1 16.43283805 ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK ddPTM_HeLa_A486_30min_R1 1 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 ERPIS(1)LGIFPLPAGDGLLT(1)PDAQK 79.163 0.0051132 22620000 14897 15101 8603.8 8676.1 13032 13560 19900 17239 13608 15960 TRUE FALSE FALSE 13852.79723 13904.34176 11935.42178 20198.39927 11397.40504 11887.10507 14920.80952 13314.05602 14787.5524 11963.51212 1.157920608 1.162229087 0.997651999 1.688333582 0.952680528 0.993613326 1.247193079 1.112888581 1.23605445 1 13.54635336 ERPIS(ph)LGIFPLPAGDGLLTPDAQK ddPTM_HeLa_A485_30min_R1 3 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 ERPIS(1)LGIFPLPAGDGLLTPDAQK;ERPIS(1)LGIFPLPAGDGLLTPDAQK;ERPIS(1)LGIFPLPAGDGLLTPDAQK ;; 188.93 5.31E-21 1390308000 470407 441392 347451 528472 564819 500099 762109 746783 463599 766602 TRUE FALSE FALSE 575047.4143 493008.9548 475987.5835 557341.0872 508583.6372 526283.4103 599278.1863 563633.2983 556639.0669 575502.2297 0.999209707 0.856658636 0.827082084 0.968442968 0.883721402 0.914476753 1.041313405 0.979376394 0.967223128 1 19.13446199 -6.656733516 7.039349833 0.994930821 0.90293575 0.42870781 0.050048336 0.214394246 12.78332289 0.019280283 0.014856972 2.20E-07 6.656733516 -0.091995071 ERPIS(ph)LGIFPLPAGDGLLTPDAQK ddPTM_HeLa_A486_30min_R1 4 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 ERPIS(1)LGIFPLPAGDGLLTPDAQK;ERPIS(1)LGIFPLPAGDGLLTPDAQK;ERPIS(1)LGIFPLPAGDGLLTPDAQK;ERPIS(1)LGIFPLPAGDGLLTPDAQK ;;; 215.3 7.76E-31 1403326000 1191317 1268563 774193 629595 1263983 1196644 1627611 1487960 1006809 1439586 TRUE FALSE FALSE 1107811.83 1168037.448 1073981.263 1465728.978 1105442.466 1049014.23 1220365.513 1149183.99 1094080.015 1079104.295 1.026603114 1.082413862 0.995252514 1.358282961 1.024407437 0.972115702 1.130905991 1.064942466 1.013877916 1 20.04140288 ERPISLGIFPLPAGDGLLT(ph)PDAQK ddPTM_HeLa_A485_30min_R1 3 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK ;; 105.02 0.00045511 853431000 208473 149952 122527 235262 204112 137081 196768 158296 121572 243673 TRUE FALSE FALSE 254847.0996 167487.582 167854.8361 248113.7673 183789.8926 144258.3492 154726.9094 119473.6578 145970.3853 182929.8056 1.393141478 0.915583885 0.917591508 1.356333193 1.004701733 0.788599478 0.845826676 0.653112036 0.797958456 1 17.48093063 -6.130673038 3.988634549 0.79766593 1.119263484 0.455653985 0.167332498 0.223511841 6.111182709 0.056728628 0.05709018 7.40E-07 6.130673038 0.321597553 ERPISLGIFPLPAGDGLLT(ph)PDAQK ddPTM_HeLa_A486_30min_R1 4 ERPISLGIFPLPAGDGLLTPDAQK 24 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK;ERPISLGIFPLPAGDGLLT(1)PDAQK ;;; 210.32 6.94E-29 1841536000 1769849 1982677 1151755 869241 1741334 2034429 2427904 2281059 1469200 2556491 TRUE FALSE FALSE 1645791.725 1825562.454 1597745.381 2023636.977 1522919.652 1783441.835 1820416.739 1761711.661 1596551.439 1916329.014 0.85882524 0.95263519 0.833753165 1.055996628 0.794706776 0.930655343 0.949949996 0.919315863 0.833130129 1 20.86991385 -11.09786304 4.296815068 1.245987038 0.906585822 0.136764906 0.072501248 0.084388567 0.00192201 0.034674421 0.015789528 7.98E-12 11.09786304 -0.339401216 ERPISLGIFPLPAGDGLLT(ph)PDAQKGGETPGSEQWK ddPTM_HeLa_A486_30min_R1 1 ERPISLGIFPLPAGDGLLTPDAQKGGETPGSEQWK 35 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 ERPISLGIFPLPAGDGLLT(1)PDAQKGGETPGSEQWK 105.18 0.00010551 74046000 71679 55826 32781 41609 68799 62770 90034 87253 40491 102850 TRUE FALSE FALSE 66654.67225 51402.14445 45474.68111 96867.8548 60169.58789 55026.0756 67506.54092 67387.39662 44000.79248 77095.69056 0.864570662 0.666731747 0.589847251 1.256462639 0.780453323 0.713737372 0.87562016 0.874074752 0.570729598 1 16.2343626 ERPISMINEASNYNVTSDYAVHPMS(ph)PVGR ddPTM_HeLa_A485_30min_R1 2 ERPISMINEASNYNVTSDYAVHPMSPVGR 29 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;Q9HAU0-3;F5H1X3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 ERPISMINEASNYNVTSDYAVHPMS(1)PVGR;ERPISMINEASNYNVTSDYAVHPMS(1)PVGR ; 238.21 2.90E-50 643480000 132027 175116 183350 133845 191353 189079 170851 235339 177522 156279 TRUE FALSE FALSE 161395.9507 195594.2929 251178.7948 141156.6134 172301.2234 198978.8841 134347.2881 177621.7413 213149.0371 117321.5214 1.375672159 1.667164648 2.140943894 1.203160441 1.468624182 1.696013499 1.145120576 1.51397407 1.816794008 1 16.84010816 -5.288813766 24.98896121 1.43144972 1.721850961 0.2010613 0.290756789 1243.168034 1134834.449 0.081214854 0.120490896 5.14E-06 5.288813766 0.290401242 ERPISMINEASNYNVTSDYAVHPMS(ph)PVGR ddPTM_HeLa_A486_30min_R1 2 ERPISMINEASNYNVTSDYAVHPMSPVGR 29 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;Q9HAU0-3;F5H1X3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 ERPISMINEASNYNVTSDYAVHPMS(1)PVGR;ERPISMINEASNYNVTSDYAVHPMS(1)PVGR ; 194.63 1.53E-21 694100000 226939 242359 219012 54852 296412 195129 232785 240229 207944 266209 TRUE FALSE FALSE 211031.748 223153.5902 303819.3117 127698.2281 259233.243 171055.9679 174539.7309 185534.1009 225968.7533 199548.5337 1.057545972 1.118292308 1.522533422 0.639935687 1.299098712 0.857214858 0.874673081 0.929769302 1.132399969 1 17.60638015 -5.258194323 24.99993101 0.965001288 1.221340712 0.279715128 0.198926918 390.2456844 3006442.128 0.052837384 0.086793504 5.52E-06 5.258194323 0.256339424 ERPLQQVS(ph)PVASVPWR ddPTM_HeLa_A485_30min_R1 4 ERPLQQVSPVASVPWR 16 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 ERPLQQVS(1)PVASVPWR;ERPLQQVS(1)PVASVPWR;ERPLQQVS(1)PVASVPWR;ERPLQQVS(1)PVASVPWR ;;; 177.29 2.49E-13 1458750000 638190 864990 826200 601270 984490 840890 952020 1056850 779410 862210 TRUE FALSE FALSE 780153.1638 966143.0561 1131845.761 634115.8576 886470.7188 884917.7001 748613.1497 797655.8804 935830.4378 647276.9148 1.205285012 1.492627087 1.748626801 0.979667038 1.369538599 1.367139288 1.156557777 1.232325551 1.445796098 1 19.30402353 -13.83366058 0.11899151 1.44E-14 1.495271468 0.197828558 0.199410242 243.9097838 1.957737598 59.80261759 2.023245299 1.47E-14 13.83366058 1.495271468 ERPLQQVS(ph)PVASVPWR ddPTM_HeLa_A486_30min_R1 3 ERPLQQVSPVASVPWR 16 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 ERPLQQVS(1)PVASVPWR;ERPLQQVS(1)PVASVPWR;ERPLQQVS(1)PVASVPWR ;; 174.26 9.13E-13 981100000 526710 527950 462830 185439 622110 491190 572640 589440 432210 566630 TRUE FALSE FALSE 489790.3489 486113.3192 642050.171 431711.3636 544079.1629 430591.9719 429359.4152 455237.3794 469674.3108 424742.1599 1.153147474 1.144490388 1.51162336 1.016408081 1.280963404 1.013772619 1.010870725 1.071797016 1.105786887 1 18.69622779 -6.267304335 24.9702566 1.043084337 1.22180111 0.354484555 0.122017568 561.1409913 2389070.866 0.041779985 0.037824429 5.40E-07 6.267304335 0.178716773 ERPQPVQAFSSALHEAAPSQLEGKLPS(ph)PDVR ddPTM_HeLa_A486_30min_R1 1 ERPQPVQAFSSALHEAAPSQLEGKLPSPDVR 31 2 Q9H425;Q9H425-2;Q9H425-3;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 ERPQPVQAFSSALHEAAPS(0.067)QLEGKLPS(0.933)PDVR 91.485 0.00011099 156160000 82301 94816 81114 32936 100730 113150 131780 104620 100720 116300 TRUE FALSE FALSE 76532.1249 87302.43485 112523.5131 76676.67249 88095.50413 99190.70342 98807.25017 80800.30984 109450.4907 87177.72301 0.877886256 1.001430547 1.290737005 0.879544336 1.010527702 1.13779874 1.133400217 0.926845839 1.255486917 1 16.4116719 -6.237310367 23.69154824 1.088802581 1.019560511 0.0777847 0.134131365 1356.076685 1331490.412 0.044112831 0.04408633 5.79E-07 6.237310367 -0.069242069 ERPS(ph)SAIYPSDSFR ddPTM_HeLa_A485_30min_R1 1 ERPSSAIYPSDSFR 14 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ERPS(0.565)S(0.435)AIYPSDSFR 108.75 0.00014734 248330000 90461 129620 122320 101670 131000 115710 149410 173040 120780 129160 TRUE FALSE FALSE 110583.7374 144777.9315 167571.2582 107223.9747 117957.18 121768.3967 117487.3329 130601.6687 145019.4381 96962.78901 1.140476037 1.493128786 1.728201714 1.105826016 1.216520082 1.255826054 1.211674438 1.346925661 1.495619501 1 16.56514358 -5.286224744 24.98887995 1.247005073 1.457854966 0.234205934 0.181673542 1146.893983 1156308.805 0.051740959 0.076779362 5.17E-06 5.286224744 0.210849893 ERPS(ph)SAIYPSDSFR ddPTM_HeLa_A486_30min_R1 3 ERPSSAIYPSDSFR 14 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ERPS(0.5)S(0.5)AIYPSDSFR;ERPS(0.591)S(0.409)AIYPSDSFR;ERPS(0.5)S(0.5)AIYPSDSFR ;; 137.13 3.79E-06 548570000 291513 357668 285160 109484 317909 264732 347761 358573 249417 297445 TRUE FALSE FALSE 271079.4441 329325.0851 395581.5888 254884.285 278033.8888 232072.0574 260747.5196 276933.7555 271036.6664 222962.836 1.215805508 1.477040259 1.77420415 1.143169371 1.246996557 1.040855336 1.169466285 1.242062402 1.215613648 1 17.76644373 -5.301998011 24.87195552 1.16141123 1.487819102 0.527697234 0.146245116 370.9751653 227494.0245 0.041401913 0.061409848 4.99E-06 5.301998011 0.326407872 ERPS(ph)SREDT(ph)PSR ddPTM_HeLa_A485_30min_R1 1 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 ERPS(0.905)S(0.229)REDT(0.71)PS(0.156)R 57.595 0.029108 1050100000 331100 441320 488080 385710 596870 425040 523050 552790 442960 489660 TRUE FALSE FALSE 404752.0527 492928.535 668641.1027 406780.3606 537443.5271 447294.4372 411296.0946 417217.3858 531858.0089 367596.7735 1.101076184 1.340949025 1.818952588 1.106593936 1.462046366 1.216807299 1.118878413 1.134986528 1.446851679 1 18.48776458 -6.391394501 5.90881474 1.184165741 1.374716295 0.153146888 0.215099839 0.470675585 20.66875099 0.076565031 0.067155797 4.06E-07 6.391394501 0.190550554 ERPS(ph)SREDTPSR ddPTM_HeLa_A485_30min_R1 1 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERPS(0.677)S(0.321)REDT(0.002)PSR 105.53 0.00039873 6879500000 165460 238720 253870 176010 343320 254570 308650 351650 244550 286860 TRUE FALSE FALSE 202266.0062 266636.2274 347787.0774 185624.9806 309137.8553 267898.8916 242704.4061 265407.2861 293628.9419 215351.0813 0.939238405 1.238146685 1.614977159 0.86196447 1.4355064 1.244009967 1.127017355 1.232439998 1.363489517 1 17.71633104 -10.20214369 5.931340839 0.999995684 1.233071527 0.096313019 0.209593007 1.14E-05 1.54E-06 0.193729868 0.046985525 6.28E-11 10.20214369 0.233075843 ERPS(ph)SREDTPSR ddPTM_HeLa_A486_30min_R1 4 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERPS(0.941)S(0.059)REDTPSR;ERPS(0.75)S(0.246)REDT(0.004)PS(0.001)R;ERPS(0.687)S(0.287)REDT(0.002)PS(0.024)R;ERPS(0.766)S(0.219)REDTPS(0.015)R ;;; 107.73 0.00035249 15762970000 1470664 1723567 1817348 782813 2629750 1767634 2118566 2288690 1659237 1678859 TRUE FALSE FALSE 1367578.048 1586985.274 2521073.816 1822428.225 2299902.234 1549561.289 1588478.379 1767605.249 1803060.999 1258461.779 1.086706065 1.261051627 2.003297882 1.448139511 1.827550325 1.231313748 1.26223808 1.40457603 1.432749909 1 20.26322997 -6.334333716 24.99999274 1.291215171 1.532937717 0.188027631 0.266531086 283.6071251 97264.89651 0.096749594 0.08532513 4.63E-07 6.334333716 0.241722547 ERPSGPES(ph)PVQGPR ddPTM_HeLa_A486_30min_R1 1 ERPSGPESPVQGPR 14 1 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 ERPS(0.011)GPES(0.989)PVQGPR 79.676 0.0024938 440510000 565830 542070 524270 199720 797150 551000 637560 655130 461510 576150 TRUE FALSE FALSE 526168.2389 499114.399 727281.3844 464958.2533 697164.0139 483023.2222 478035.7446 505971.2004 501514.0584 431878.2899 1.218325281 1.155683003 1.683996166 1.076595569 1.614260384 1.118424411 1.106876071 1.171559701 1.161239336 1 18.72026527 -6.408443913 22.0534323 1.121965914 1.344787294 0.299245548 0.181791449 11.86389472 2259.295809 0.061037045 0.053829529 3.90E-07 6.408443913 0.22282138 ERPSS(ph)AIYPSDSFR ddPTM_HeLa_A485_30min_R1 1 ERPSSAIYPSDSFR 14 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ERPS(0.272)S(0.728)AIYPSDSFR 92.613 0.00059187 212240000 98637 117560 127870 93237 124060 112990 131670 157830 115930 103200 TRUE FALSE FALSE 120578.4604 131307.6194 175174.4341 98330.30122 111708.1508 118905.9817 103537.6289 119121.945 139196.0876 77474.13926 1.556370442 1.694857415 2.261069769 1.269201596 1.44187663 1.534782869 1.336415349 1.537570423 1.796678078 1 16.2414272 -5.291282787 24.99975311 1.441675837 1.823175312 0.357525994 0.256748536 790.5611999 662249.5977 0.071287488 0.105751704 5.11E-06 5.291282787 0.381499475 ERPSS(ph)REDT(ph)PSR ddPTM_HeLa_A485_30min_R1 1 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 ERPS(0.407)S(0.602)REDT(0.899)PS(0.092)R 72.819 0.008677 1074800000 440530 501460 591500 450040 722860 497540 622670 727550 523010 547370 TRUE FALSE FALSE 538524.3787 560101.3849 810320.4644 474624.5456 650889.5203 523590.4251 489631.4678 549117.2217 627973.3097 410920.7326 1.310531049 1.363039974 1.97196296 1.155027011 1.583978292 1.274188386 1.191547247 1.336309361 1.528210333 1 18.6485006 -6.280959725 23.44960688 1.282413864 1.480202652 0.165794922 0.235001056 754.4512506 906310.5493 0.081512395 0.072020459 5.24E-07 6.280959725 0.197788788 ERPSS(ph)REDTPSR ddPTM_HeLa_A485_30min_R1 3 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERPS(0.376)S(0.622)REDTPS(0.002)R;ERPS(0.368)S(0.632)REDTPSR;ERPS(0.403)S(0.566)REDT(0.016)PS(0.016)R ;; 106.38 0.00038093 7984985000 267401 355671 422500 302693 541498 385771 458190 571775 400859 463233 TRUE FALSE FALSE 326883.4299 397263.6295 578800.3317 319228.3521 487584.5578 405969.373 360293.9634 431546.2847 481307.7244 347757.5383 0.939975109 1.142358068 1.664378965 0.917962422 1.402081922 1.167392014 1.036049327 1.24094013 1.384032469 1 18.40772226 ERPSS(ph)REDTPSR ddPTM_HeLa_A486_30min_R1 1 ERPSSREDTPSR 12 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERPS(0.407)S(0.593)REDTPSR 90.367 0.001515 28517000 15249 20569 18618 7769.1 28775 18303 18317 23079 14980 14841 TRUE FALSE FALSE 14180.12385 18939.03753 25827.38821 18086.85743 25165.77118 16044.96195 13733.89286 17824.41551 16278.47846 11124.717 1.274650298 1.702428702 2.321622043 1.625826295 2.262149337 1.44228046 1.234538628 1.60223541 1.463271242 1 13.44148102 -6.490560596 23.09509838 1.369942122 1.845717078 0.372055655 0.31823952 296.73699 212053.4321 0.111840927 0.098512724 3.23E-07 6.490560596 0.475774957 ERPT(ph)SPAPHRPPK ddPTM_HeLa_A485_30min_R1 2 ERPTSPAPHRPPK 13 2 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ERPT(0.986)S(0.014)PAPHRPPK;ERPT(0.5)S(0.5)PAPHRPPK ; 100.23 0.00077401 1557760000 199341 217057 194113 249125 268510 236309 280320 309360 217406 308960 TRUE FALSE FALSE 243683.7177 242439.928 265923.4764 262734.0679 241776.2016 248681.7738 220427.342 233488.9749 261037.39 231941.958 1.050623698 1.045261194 1.146508716 1.132757825 1.042399589 1.072172435 0.950355614 1.006669845 1.125442728 1 17.8234043 -6.195202805 2.241147949 1.023471286 1.09208584 0.230169992 0.052798729 0.471417656 4.648886752 0.021003547 0.020237737 6.38E-07 6.195202805 0.068614554 ERPT(ph)SPAPHRPPK ddPTM_HeLa_A486_30min_R1 1 ERPTSPAPHRPPK 13 2 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ERPT(0.855)S(0.145)PAPHRPPK 75.376 0.0077935 659430000 125730 141860 92895 58310 137080 146110 148650 156880 120810 180150 TRUE FALSE FALSE 116916.9763 130618.497 128866.4318 135748.6268 119886.1482 128084.4337 111456.1977 121161.8487 131281.9081 135039.2674 0.865799841 0.967263074 0.954288588 1.005252986 0.887787312 0.948497694 0.825361392 0.897234197 0.972175802 1 17.04301946 -5.800887263 24.99994319 0.913213141 0.949955014 0.036924499 0.055974647 404.2464676 256187.5404 0.017211736 0.019516503 1.58E-06 5.800887263 0.036741872 ERPT(ph)SPAPHRPPKR ddPTM_HeLa_A485_30min_R1 4 ERPTSPAPHRPPKR 14 3 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ERPT(0.836)S(0.164)PAPHRPPKR;ERPT(0.5)S(0.5)PAPHRPPKR;ERPT(0.909)S(0.091)PAPHRPPKR;ERPT(0.874)S(0.126)PAPHRPPKR ;;; 148.03 2.80E-08 8350800000 146202.6 198208.8 155557.1 170508.4 210757.3 201725.6 232089 269950 166182.1 183596.4 TRUE FALSE FALSE 178724.864 221387.595 213104.1446 179822.8421 189773.5632 212287.6405 182501.2892 203744.3392 199533.3232 137829.1963 1.296712661 1.606245998 1.546146609 1.304678885 1.376874917 1.540222581 1.324111974 1.478237882 1.447685458 1 17.072522 -10.44039096 2.810884484 0.988261221 1.439390291 0.615381272 0.103288028 10990833.94 12265988.76 1021072.278 0.025844674 3.63E-11 10.44039096 0.451129069 ERPT(ph)SPAPHRPPKR ddPTM_HeLa_A486_30min_R1 6 ERPTSPAPHRPPKR 14 3 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ERPT(0.785)S(0.215)PAPHRPPKR;ERPT(0.789)S(0.211)PAPHRPPKR;ERPT(0.5)S(0.5)PAPHRPPKR;ERPT(0.5)S(0.5)PAPHRPPKR;ERPT(0.903)S(0.097)PAPHRPPKR;ERPT(0.5)S(0.5)PAPHRPPKR ;;;;; 157.58 5.52E-09 9035020000 551466 529366 411746.5 216878.9 578508 521474.6 551712 601994 410378 560934.3 TRUE FALSE FALSE 512811.0812 487417.1102 571185.7718 504905.0397 505946.1323 457140.3658 413667.8222 464933.1076 445949.8955 420472.7002 1.219606126 1.159212263 1.358437234 1.20080338 1.203279385 1.087205818 0.983816124 1.105739106 1.060591794 1 18.68165261 -6.259357966 2.561111577 1.044588042 1.235773932 0.722345513 0.056834424 0.161715201 2.101396378 0.021703781 0.020121929 5.50E-07 6.259357966 0.19118589 ERPTS(ph)PAPHRPPKR ddPTM_HeLa_A485_30min_R1 2 ERPTSPAPHRPPKR 14 3 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 ERPT(0.081)S(0.919)PAPHRPPKR;ERPT(0.004)S(0.996)PAPHRPPKR ; 178.14 1.35E-13 1918830000 172450 180848 166368 164970 209443 208351 236881 270462 175994 211558 TRUE FALSE FALSE 210810.9076 201996.6004 227914.4464 173981.8934 188590.1195 219259.9362 186269.4392 204130.7704 211314.3815 158820.484 1.327353388 1.271854834 1.435044401 1.095462556 1.18744204 1.380551996 1.172830069 1.285292459 1.33052347 1 17.27703747 -11.28652952 1.966895883 2.77E-05 1.273163088 0.424234052 0.096491406 1637977.039 234162.2781 7264948.069 0.02410249 5.17E-12 11.28652952 1.273135423 ERQAQAQES(ph)EEEEESR ddPTM_HeLa_A485_30min_R1 2 ERQAQAQESEEEEESR 16 1 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 0 ERQAQAQES(1)EEEEESR;ERQAQAQES(1)EEEEESR ; 168.46 2.18E-12 1492900000 415972 800490 641730 371430 742530 611240 743050 964890 519070 526030 TRUE FALSE FALSE 508503.5363 894100.3422 879132.6316 391720.2804 668601.106 643243.5812 584291.2973 728249.2146 623242.5878 394900.4019 1.287675409 2.264116061 2.226213565 0.991947029 1.693087935 1.628875479 1.479591549 1.844133891 1.578227282 1 18.59112931 -11.60505227 0.226424474 1.42E-11 1.785911436 0.228890625 0.366773681 71.34584643 1.877381157 36.74004524 0.731623389 2.48E-12 11.60505227 1.785911436 ERQAQAQES(ph)EEEEESR ddPTM_HeLa_A486_30min_R1 2 ERQAQAQESEEEEESR 16 1 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 0 ERQAQAQES(1)EEEEESR;ERQAQAQES(1)EEEEESR ; 283.09 3.68E-59 2122130000 1042580 999580 888560 319850 1238230 814760 976440 1096790 793510 1168330 TRUE FALSE FALSE 969500.5259 920369.6404 1232634.228 744626.9643 1082919.647 714243.1951 732124.3843 847074.8598 862292.0857 875772.5634 1.107023177 1.050923126 1.407482125 0.850251533 1.236530685 0.815557857 0.835975474 0.967231557 0.98460733 1 19.74019673 -6.26355208 24.99883401 0.91333273 1.125849373 0.348964414 0.143014112 218.4244048 2584525.104 0.047867491 0.044305413 5.45E-07 6.26355208 0.212516643 ERQELGS(ph)PEER ddPTM_HeLa_A486_30min_R1 1 ERQELGSPEER 11 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ERQELGS(1)PEER 70.41 0.0064692 505740000 167320 211210 205360 66682 260240 192780 185200 207080 170410 180640 TRUE FALSE FALSE 155591.732 194472.9504 284880.8917 155239.0659 227598.2726 168996.7636 138861.0012 159932.4045 185181.276 135406.5682 1.149070788 1.436215044 2.10389271 1.14646629 1.680851051 1.248069173 1.025511561 1.181127375 1.367594485 1 17.0469382 -6.437689794 5.834537584 1.155480381 1.511622105 0.285444703 0.271483893 0.311150498 16.80664785 0.097068556 0.084719492 3.65E-07 6.437689794 0.356141724 ERQYS(ph)VCNSEDSPGSCEILYFNMGSPDQLMVHK ddPTM_HeLa_A486_30min_R1 1 ERQYSVCNSEDSPGSCEILYFNMGSPDQLMVHK 33 1 H0YME5;Q9P2K8-2;Q9P2K8;Q9P2K8-3 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 ERQYS(0.957)VCNS(0.043)EDSPGSCEILYFNMGSPDQLMVHK 153.24 5.56E-10 62587000 12802 15909 13636 6117.6 17624 14427 17790 13852 11683 13596 TRUE FALSE FALSE 11904.64591 14648.3129 18916.22438 14242.08197 15413.43358 12647.14342 13338.75384 10698.20199 12695.69185 10191.4731 1.168098644 1.437310657 1.856083433 1.397450773 1.512385248 1.240953422 1.308815095 1.049720867 1.245717053 1 13.31507498 -6.669984931 1.194089617 1.106000348 1.494685779 0.442892963 0.175767447 0.457555919 1.321514172 0.113947603 0.070781812 2.14E-07 6.669984931 0.388685431 ERQYSVCNS(ph)EDSPGSCEILYFNMGSPDQLMVHK ddPTM_HeLa_A485_30min_R1 1 ERQYSVCNSEDSPGSCEILYFNMGSPDQLMVHK 33 1 H0YME5;Q9P2K8-2;Q9P2K8;Q9P2K8-3 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 ERQY(0.237)S(0.341)VCNS(0.398)EDS(0.02)PGS(0.004)CEILYFNMGSPDQLMVHK 62.605 0.005085 51467000 20315 23006 24612 25525 31651 23270 27883 32154 19028 25634 TRUE FALSE FALSE 24834.00166 25696.35157 33717.00299 26919.36612 28499.71531 24488.38122 21925.56927 24268.18108 22846.74506 19243.91556 1.290485899 1.33529746 1.752086413 1.398850771 1.48097279 1.272525913 1.139350731 1.261083328 1.18721915 1 14.23211475 -6.4296028 3.018909151 1.169320226 1.459605212 0.541562731 0.131578227 0.22749524 4.002540011 0.052473863 0.044142651 3.72E-07 6.4296028 0.290284986 ERRDS(ph)DTYR ddPTM_HeLa_A485_30min_R1 1 ERRDSDTYR 9 2 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 ERRDS(0.978)DT(0.022)YR 98.865 0.0014977 706820000 112750 209960 140810 127150 127420 190830 160840 250200 173010 169720 TRUE FALSE FALSE 137830.8485 234512.9956 192901.4786 134095.8825 114733.6174 200821.5637 126475.2201 188838.0577 207731.5201 127411.9275 1.081773514 1.840589027 1.51399859 1.052459414 0.900493538 1.576159844 0.992648197 1.482106593 1.630393042 1 16.95914081 -5.22603729 21.76100034 1.243924639 1.51496789 0.120594234 0.297892446 257.5495757 158308.0792 0.080457298 0.139336327 5.94E-06 5.22603729 0.271043251 ERRDS(ph)DTYR ddPTM_HeLa_A486_30min_R1 1 ERRDSDTYR 9 2 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 ERRDS(0.943)DT(0.057)YR 110.51 0.000649 292110000 102570 89770 156530 37016 107980 124270 118920 102170 115600 103580 TRUE FALSE FALSE 95380.37267 82656.29826 217142.608 86175.11869 94436.14153 108938.8309 89164.95819 78908.12136 125620.3011 77642.89381 1.228449482 1.064570036 2.796683603 1.109890609 1.216288277 1.403075356 1.148398183 1.016295471 1.617923997 1 16.24456627 ERRPDS(ph)PTRPTLR ddPTM_HeLa_A485_30min_R1 2 ERRPDSPTRPTLR 13 3 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 ERRPDS(1)PTRPTLR;ERRPDS(0.989)PT(0.011)RPTLR ; 171.29 2.26E-11 1074610000 43409 95496 80803 49278 102777 80601 72182 121778 64411 83597 TRUE FALSE FALSE 53065.18229 106663.4265 110695.3922 51969.93236 92544.16101 84821.14373 56759.72603 91911.75456 77337.69689 62757.80639 0.845555085 1.699604123 1.763850564 0.828103074 1.474623897 1.351563233 0.904424952 1.46454696 1.232319951 1 15.93750731 -5.250582658 24.99661492 1.206746042 1.462663293 0.119796378 0.310650246 1582.0437 3642505.235 0.082912979 0.141818891 5.62E-06 5.250582658 0.255917251 ERRPDS(ph)PTRPTLR ddPTM_HeLa_A486_30min_R1 2 ERRPDSPTRPTLR 13 3 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 ERRPDS(0.995)PT(0.005)RPTLR;ERRPDS(0.999)PT(0.001)RPTLR ; 143.83 5.88E-07 903560000 58494 56759 51973 22460.9 72125 44938 50698 63038 50819 61733 TRUE FALSE FALSE 54393.87266 52261.21013 72098.33749 52290.11031 63078.40996 39394.00646 38012.82417 48685.62351 55224.03184 46274.65499 1.17545712 1.129370065 1.558052405 1.129994601 1.363130854 0.851308486 0.821460996 1.052101275 1.193396944 1 15.49793461 -6.257440664 24.9882266 0.976772834 1.271412904 0.469860752 0.152630334 321.483897 2008977.452 0.052876314 0.050998887 5.53E-07 6.257440664 0.29464007 ERRPS(ph)PGEMR ddPTM_HeLa_A485_30min_R1 3 ERRPSPGEMR 10 2 A0A0G2JHC2;Q6NYC8;Q6NYC8-2;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 ERRPS(1)PGEMR;ERRPS(1)PGEMR;ERRPS(1)PGEMR ;; 102.9 0.0008854 4539530000 1341370 2053800 1981570 1501280 2075590 2046930 2082510 2271620 1701600 2137370 TRUE FALSE FALSE 1639753.129 2293974.044 2714635.203 1583291.125 1868936.972 2154104.09 1637564.726 1714501.633 2043095.512 1604562.994 1.021931289 1.429656581 1.691822143 0.986742889 1.164763851 1.342486457 1.020567427 1.06851625 1.273303397 1 20.613749 -5.287335879 24.999313 1.13189479 1.385988806 0.286631614 0.186622731 961.9521212 928622.9845 0.053085383 0.078769515 5.16E-06 5.287335879 0.254094016 ERRPS(ph)PGEMR ddPTM_HeLa_A486_30min_R1 4 ERRPSPGEMR 10 2 A0A0G2JHC2;Q6NYC8;Q6NYC8-2;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 ERRPS(1)PGEMR;ERRPS(1)PGEMR;ERRPS(1)PGEMR;ERRPS(1)PGEMR ;;; 98.531 0.00051606 2642070000 832390 924380 887890 313857 1054990 865430 898300 964500 843740 984020 TRUE FALSE FALSE 774043.7595 851128.7623 1231704.787 730674.9575 922663.3168 758662.0456 673535.8388 744904.4049 916876.0625 737614.9871 1.049387245 1.153892989 1.669847831 0.990591257 1.250873874 1.028533936 0.913126564 1.009882416 1.243027973 1 19.49250844 -5.96634215 1.687969404 1.035288603 1.256007027 0.178197727 0.188849553 0.614901105 3.571316214 0.07351615 0.083460467 1.08E-06 5.96634215 0.220718424 ERRT(ph)PPGR ddPTM_HeLa_A486_30min_R1 4 ERRTPPGR 8 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 ERRT(1)PPGR;ERRT(1)PPGR;ERRT(1)PPGR;ERRT(1)PPGR ;;; 108.53 0.0012795 2829370000 520406 337424 761405 304671 884075 670721 817058 733943 544238 656303 TRUE FALSE FALSE 483928.2268 310685.2934 1056241.407 709289.4852 773186.0698 587974.2624 612621.4464 566840.2008 591412.988 491960.457 0.983673017 0.63152493 2.147004687 1.441761172 1.571642718 1.195165697 1.245265626 1.152206834 1.202155538 1 18.90818283 -6.485647057 22.70189053 1.170822781 1.365696056 0.064757932 0.371435379 666.4140278 406343.3028 0.13924105 0.122740576 3.27E-07 6.485647057 0.194873276 ERRT(ph)PS(ph)DDEEDNLFAPPK ddPTM_HeLa_A485_30min_R1 2 ERRTPSDDEEDNLFAPPK 18 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 ERRT(1)PS(1)DDEEDNLFAPPK;ERRT(1)PS(1)DDEEDNLFAPPK ; 151.06 2.45E-08 561750000 501050 435690 392010 731770 633340 485470 664890 576290 492720 909010 TRUE FALSE FALSE 612506.8439 486640.1555 537030.8119 771744.7422 570282.4458 510888.4585 522830.8198 434953.9739 591604.3845 682410.5361 0.89756358 0.713119346 0.786961489 1.13090977 0.835688219 0.748652653 0.766152913 0.637378749 0.866933251 1 19.3802804 -6.004588275 24.90207742 0.780290276 0.878271303 0.057484026 0.133122092 468.0929263 2540515.945 0.042706238 0.047215576 9.89E-07 6.004588275 0.097981027 ERRT(ph)PS(ph)DDEEDNLFAPPK ddPTM_HeLa_A486_30min_R1 4 ERRTPSDDEEDNLFAPPK 18 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 ERRT(1)PS(1)DDEEDNLFAPPK;ERRT(1)PS(1)DDEEDNLFAPPK;ERRT(1)PS(1)DDEEDNLFAPPK;ERRT(1)PS(1)DDEEDNLFAPPK ;;; 166.49 3.24E-12 1180820000 662796 748022 482438 321211 749015 801790 932293 947474 594837 875470 TRUE FALSE FALSE 616337.4231 688746.0125 669250.9137 747795.4411 655066.5544 702873.3018 699023.4306 731754.8534 646397.9501 656246.6136 0.939185682 1.049523149 1.019816179 1.139503695 0.998201805 1.071050558 1.065184057 1.115060769 0.984992435 1 19.32387855 -4.008884961 1.891185048 1.05630326 0.825411625 0.305497002 0.048691433 2.211514377 4.548836992 0.012268334 1.125401807 9.80E-05 4.008884961 -0.230891635 ERS(ph)DSGGS(ph)SSEPFDR ddPTM_HeLa_A485_30min_R1 1 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 ERS(0.721)DS(0.365)GGS(0.792)S(0.079)S(0.043)EPFDR 124.68 4.01E-05 0 180100 217510 195500 212920 273690 244190 272010 306650 203500 281640 TRUE FALSE FALSE 220162.6237 242945.9024 267823.5854 224551.2805 246440.4626 256975.4108 213892.8414 231443.6067 244340.5834 211432.3312 1.04129119 1.149048024 1.266710649 1.062047981 1.165576056 1.215402627 1.011637341 1.094646242 1.155644371 1 17.68983648 -9.390089962 0.347341935 0.961555473 1.147190811 0.208511159 0.074969913 11.96441279 1.590320637 0.647448284 0.067266058 4.07E-10 9.390089962 0.185635338 ERS(ph)GS(ph)ESS(ph)VDQK ddPTM_HeLa_A485_30min_R1 1 ERSGSESSVDQK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 ERS(0.992)GS(0.904)ES(0.313)S(0.791)VDQK 100.23 0.00027045 0 458870 543770 523970 871800 689300 558400 746290 841320 591570 1150500 TRUE FALSE FALSE 560944.0484 607359.1713 717808.3072 919424.2265 620670.8717 587636.9605 586839.0449 634984.9509 710292.6728 863701.5234 0.64946516 0.703204932 0.831083757 1.064516157 0.718617317 0.680370411 0.679446578 0.735190264 0.8223821 1 19.72017331 -8.112578972 4.128927061 0.999958826 0.762526868 0.292735499 0.11339174 0.860874028 28.51201449 0.119799068 0.031419045 7.72E-09 8.112578972 -0.237431957 ERS(ph)HERPDRK ddPTM_HeLa_A486_30min_R1 2 ERSHERPDRK 10 3 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 ERS(1)HERPDRK;ERS(1)HERPDRK ; 80.469 0.0071105 54576000 26872 34722 27567 16645.9 38319 67165 53922 63630 47336 62757 TRUE FALSE FALSE 24988.41157 31970.50226 38241.68067 38752.49644 33512.67371 58878.86518 40430.14527 49142.83803 51439.12259 47042.23872 0.531190952 0.679612687 0.81292221 0.823780872 0.712395384 1.251616989 0.859443478 1.044653472 1.093466723 1 15.5216691 -4.628737883 0.448760874 1.061822623 0.300657454 0.637268624 0.123893404 2.385549075 0.476165704 0.093185522 0.936340799 2.35E-05 4.628737883 -0.761165169 ERS(ph)KDAS(ph)PINRWS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 ERSKDASPINRWSPTR 16 3 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 3 0 ERS(1)KDAS(0.999)PINRWS(0.802)PT(0.199)R;ERS(1)KDAS(1)PINRWS(0.574)PT(0.426)R ; 74.876 0.0047958 1619970000 395300 347520 296440 786750 627790 510990 838500 924770 397920 1090470 TRUE FALSE FALSE 483233.1212 388159.441 406105.4919 829728.1603 565285.0233 537744.6463 659347.6251 697968.7075 477778.8941 818635.8976 0.590290656 0.474153946 0.496075842 1.01354969 0.690520688 0.656878898 0.805422321 0.852599684 0.583628076 1 19.64286241 -3.306888862 0.14701699 0.984163169 3.56E-32 0.337049323 0.150172427 45.21603126 0.833435488 0.718924893 8.655933319 0.0004933 3.306888862 -0.984163169 ERS(ph)KDAS(ph)PINRWS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 ERSKDASPINRWSPTR 16 3 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 3 0 ERS(1)KDAS(1)PINRWS(0.883)PT(0.118)R;ERS(1)KDAS(1)PINRWS(0.568)PT(0.432)R ; 73.981 0.0051091 2354600000 874550 838470 415920 812720 869230 1125260 1711250 1548640 673940 1775450 TRUE FALSE FALSE 813248.5612 772026.5835 576975.3627 1892053.233 760203.0682 986436.862 1283077.15 1196048.479 732357.6618 1330865.764 0.611067309 0.580093503 0.433533853 1.421670978 0.571209425 0.741199367 0.964092086 0.898699562 0.550286649 1 20.34393363 ERS(ph)LS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ERSLSPR 7 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 ERS(1)LS(1)PR;ERS(1)LS(1)PR ; 89.266 0.018689 2671550000 2376679 3011100 2580280 2592988 3408340 2810810 3521740 4106490 2516480 3556130 TRUE FALSE FALSE 2905363.044 3363221.952 3534832.946 2734636.369 3068993.702 2957979.665 2769291.479 3099366.889 3021514.453 2669652.237 1.088292701 1.259797777 1.32407993 1.024341797 1.149585575 1.108001868 1.03732293 1.160962782 1.131800769 1 21.34822039 -5.268173375 24.99971236 1.095496681 1.227630901 0.408676869 0.074836405 523.5658057 1943718.814 0.020772337 0.0316049 5.39E-06 5.268173375 0.13213422 ERS(ph)LS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ERSLSPR 7 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 ERS(1)LS(1)PR;ERS(1)LS(1)PR ; 104.82 0.00058894 110190000 232910 215780 197714 67001 273370 269370 266800 269760 222990 232614 TRUE FALSE FALSE 216584.2117 198680.8069 274274.1558 155981.714 239081.3855 236137.8682 200043.8181 208341.5368 242318.9527 174365.9403 1.24212453 1.13944734 1.572980109 0.894565267 1.371147284 1.354266021 1.147264298 1.194852254 1.389714942 1 17.41175873 -10.78107663 2.744774964 0.936646808 1.252753197 0.163709715 0.173596087 44416463.98 30801937.93 18763850.18 0.040455655 1.66E-11 10.78107663 0.316106389 ERS(ph)MSENAVR ddPTM_HeLa_A485_30min_R1 2 ERSMSENAVR 10 1 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;H7C433;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 ERS(0.734)MS(0.266)ENAVR;ERS(0.67)MS(0.33)ENAVR ; 131.49 0.0009773 3214800000 1362050 2626700 1804520 1176810 2153580 2750900 3235400 4842600 2121980 2467300 TRUE FALSE FALSE 1665033.323 2933869.716 2472087.04 1241096.15 1939162.014 2894932.87 2544130.359 3654944.757 2547841.922 1852247.517 0.898925931 1.583951221 1.334641843 0.670048759 1.046923802 1.562929815 1.373536925 1.973248566 1.375540741 1 20.82084547 -6.263632515 24.94779175 1.512659614 1.121784243 0.219021284 0.321541199 281.4940667 3202089.65 0.112394368 0.103944859 5.45E-07 6.263632515 -0.390875371 ERS(ph)MSENAVR ddPTM_HeLa_A486_30min_R1 2 ERSMSENAVR 10 1 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;H7C433;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 ERS(0.944)MS(0.056)ENAVR;ERS(0.557)MS(0.443)ENAVR ; 166.08 5.59E-06 1742900000 1759680 1780740 1664130 637310 2644100 1537320 1958420 2123700 1630720 2336200 TRUE FALSE FALSE 1636335.519 1639627.677 2308525.703 1483689.888 2312452.323 1347661.089 1468402.602 1640179.87 1772072.123 1751200.314 0.934407964 0.936287907 1.318253363 0.847241675 1.320495608 0.769564211 0.838512071 0.93660323 1.011918573 1 20.73991269 -6.295452312 24.99941374 0.90280688 1.06510257 0.199371186 0.159634011 1039.684367 764162.1773 0.054517942 0.048082308 5.06E-07 6.295452312 0.16229569 ERS(ph)PALK ddPTM_HeLa_A485_30min_R1 10 ERSPALK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK ;;;;;;;;; 94.087 0.0028595 1.12E+11 55594490 41714110 34452000 83732530 50803750 42991610 66272400 49355800 49012100 102161150 TRUE FALSE FALSE 67961292.5 46592212.3 47197228.47 88306626.09 45745550.27 45242584.22 52112760.34 37251212.66 58848378.9 76694255.44 0.886132763 0.607505895 0.615394572 1.151411218 0.59646645 0.589908383 0.679487141 0.485710598 0.767311431 1 26.19261519 -4.237962173 22.79281201 0.706186427 0.88613345 0.055278662 0.195230714 5714.420605 5547548.382 0.048263822 2.272919341 5.78E-05 4.237962173 0.179947023 ERS(ph)PALK ddPTM_HeLa_A486_30min_R1 9 ERSPALK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK;ERS(1)PALK ;;;;;;;; 92.201 0.003067 64788660000 27827020 24188330 17367400 11408355 21458490 33395340 33486630 27229600 25812320 34305540 TRUE FALSE FALSE 25876489.6 22271558.64 24092522.4 26559226.99 18766966.09 29275362.49 25107920.99 21030014.5 28049752.68 25715209.49 1.006271779 0.866085055 0.936897769 1.032821723 0.729800241 1.138445421 0.976384073 0.817804518 1.090784529 1 24.61611857 -6.28523452 24.9879771 0.991527725 0.919524057 0.137698089 0.110196116 2054.328044 2157302.819 0.038109718 0.033628052 5.19E-07 6.28523452 -0.072003667 ERS(ph)PALKS(ph)PLQSVVVR ddPTM_HeLa_A485_30min_R1 4 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 ERS(1)PALKS(1)PLQSVVVR;ERS(1)PALKS(1)PLQSVVVR;ERS(1)PALKS(0.984)PLQS(0.016)VVVR;ERS(1)PALKS(0.997)PLQS(0.003)VVVR ;;; 186.35 5.23E-18 12178920000 1279910 1145450 857650 1690120 1621950 1359440 1961650 1902800 959380 2075460 TRUE FALSE FALSE 1564621.564 1279400.413 1174930.425 1782446.976 1460462.963 1430618.176 1542527.452 1436135.317 1151918.766 1558086.018 1.004194599 0.821135931 0.754085725 1.143997799 0.937344246 0.918189471 0.990014309 0.921730444 0.739316541 1 20.57134345 -2.308193119 9.404414778 0.921570143 0.876014552 0 0.117792794 0 0 0.026894737 0 0.004918208 2.308193119 -0.04555559 ERS(ph)PALKS(ph)PLQSVVVR ddPTM_HeLa_A486_30min_R1 6 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 ERS(1)PALKS(0.993)PLQS(0.007)VVVR;ERS(1)PALKS(1)PLQSVVVR;ERS(1)PALKS(0.762)PLQS(0.238)VVVR;ERS(1)PALKS(1)PLQSVVVR;ERS(1)PALKS(0.999)PLQS(0.001)VVVR;ERS(1)PALKS(0.999)PLQS(0.001)VVVR ;;;;; 195.15 8.79E-19 17491280000 6674730 6051230 3158530 3084564 5989980 6799250 8803950 8130980 4866570 9008520 TRUE FALSE FALSE 6206865.895 5571708.497 4381597.404 7181020.877 5238660.854 5960427.665 6601108.591 6279733.352 5288408.206 6752727.956 0.919164216 0.825104837 0.648863309 1.06342517 0.775784377 0.882669597 0.977546946 0.929955033 0.783151378 1 22.68703901 -5.26035944 24.99999006 0.90848139 0.800450205 0.209698999 0.104535272 168.2613801 3895114.653 0.02841808 0.045847632 5.49E-06 5.26035944 -0.108031185 ERS(ph)PALKSPLQS(ph)VVVR ddPTM_HeLa_A485_30min_R1 1 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 ERS(1)PALKS(0.489)PLQS(0.511)VVVR 114.57 0.00050609 2656800000 1885300 1611100 1204600 2431400 2351500 2038200 2942100 2911900 1605700 3189800 TRUE FALSE FALSE 2304678.481 1799504.13 1650231.668 2564221.225 2117376.403 2144917 2313496.3 2197751.959 1927949.262 2394641.564 0.962431504 0.751471184 0.689135148 1.070816303 0.884214337 0.895715264 0.966113816 0.917779092 0.805109746 1 21.1913783 -5.251906508 24.99105554 0.928461177 0.796058482 0.300013321 0.092876744 863.0619341 2262568.815 0.025037985 0.042673566 5.60E-06 5.251906508 -0.132402695 ERS(ph)PALKSPLQSVVVR ddPTM_HeLa_A485_30min_R1 4 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ERS(0.999)PALKS(0.001)PLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR ;;; 172.71 1.15E-12 70806400000 3463570 5124380 3387080 2911430 5543500 5625940 7587700 9452800 3742260 4489650 TRUE FALSE FALSE 4234029.197 5723631.665 4640101.84 3070474.049 4991569.676 5920505.519 5966525.909 7134485.979 4493297.256 3370462.881 1.25621594 1.698173772 1.376695725 0.910994768 1.480974528 1.756585291 1.770239317 2.116767409 1.333139517 1 21.68451531 -6.003265529 24.98689524 1.669708984 1.324567478 0.121649535 0.331257836 227.217672 1738625.548 0.102741469 0.11424043 9.93E-07 6.003265529 -0.345141506 ERS(ph)PALKSPLQSVVVR ddPTM_HeLa_A486_30min_R1 5 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR;ERS(0.994)PALKS(0.001)PLQS(0.005)VVVR;ERS(1)PALKSPLQSVVVR;ERS(1)PALKSPLQSVVVR ;;;; 188.27 4.69E-18 66707860000 12453590 10044340 7264250 4522073 13146260 9828020 13647010 13827530 7476039 15286900 TRUE FALSE FALSE 11580657.65 9248389.918 10077162.14 10527614.48 11497333.49 8615538.816 10232383.75 10679303.27 8124068.08 11458960.74 1.01062024 0.807088019 0.879413271 0.918723322 1.003348711 0.751860401 0.892959142 0.931960892 0.708970758 1 23.44997287 -6.252763739 24.96199487 0.855135849 0.914600285 0.105730301 0.095004473 1694.568806 4875703.169 0.030621131 0.030183002 5.59E-07 6.252763739 0.059464436 ERS(ph)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR ddPTM_HeLa_A485_30min_R1 2 ERSPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR 40 3 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 ERS(0.609)PAPPPPAVFPAARPEPGDGLS(0.154)S(0.154)PAGGS(0.042)YET(0.042)GDRDDGR;ERS(1)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR ; 135.89 1.63E-07 1169170000 36796 49977 53843 53492 59373 44205 57379 36798 47313 67684 TRUE FALSE FALSE 44981.14326 55821.37541 73761.76629 56414.13251 53461.61565 46519.50545 45119.50791 27773.2328 56808.28512 50811.62443 0.885253006 1.098594584 1.451671091 1.110260362 1.052153247 0.915528798 0.887976096 0.546592106 1.118017496 1 15.63287097 -6.176897155 2.013405362 0.854729717 1.154289093 0.267031386 0.187672952 0.400232625 3.193332628 0.074167498 0.072153725 6.65E-07 6.176897155 0.299559376 ERS(ph)PAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR ddPTM_HeLa_A486_30min_R1 1 ERSPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGR 40 3 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 ERS(0.915)PAPPPPAVFPAARPEPGDGLS(0.026)S(0.026)PAGGS(0.026)YET(0.008)GDRDDGR 71.524 0.0079361 376180000 17510 25240 17670 8017.8 26746 26116 23888 15644 21313 23797 TRUE FALSE FALSE 16282.63942 23239.89048 24512.29722 18665.8436 23391.26728 22894.07345 17910.96974 12082.20271 23160.428 17838.07631 0.912802431 1.302824928 1.374155867 1.046404516 1.31131109 1.283438475 1.004086395 0.677326551 1.298370273 1 14.12267242 -6.841533251 6.227383692 0.963543962 1.214464319 0.220446543 0.190449545 0.278876224 17.06941411 0.077660504 0.052279584 1.44E-07 6.841533251 0.250920357 ERS(ph)PGRLFEDSSR ddPTM_HeLa_A485_30min_R1 1 ERSPGRLFEDSSR 13 2 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 ERS(0.999)PGRLFEDSSR 66.826 0.0098293 324690000 64654 115110 96674 78083 138730 142900 169390 263420 92912 83018 TRUE FALSE FALSE 79036.05925 128571.1132 132437.7355 82348.47657 124917.5541 150382.023 133198.4427 198815.832 111558.5862 62323.14043 1.268165543 2.062975522 2.125017042 1.321314619 2.004352689 2.412940394 2.137222896 3.190080452 1.790002644 1 15.92748031 -5.998084748 24.91950553 2.240852009 1.740379838 0.078282225 0.577493087 118.2056723 1537937.795 0.172279007 0.194052084 1.00E-06 5.998084748 -0.50047217 ERS(ph)PPLSPEEK ddPTM_HeLa_A486_30min_R1 1 ERSPPLSPEEK 11 1 H0YEF1;H0Y343;Q8N157 H0YEF1 AHI1 Jouberin 1 0 ERS(0.998)PPLS(0.002)PEEK 57.583 0.0068706 0 307910 290170 180410 112070 307620 363840 389900 380900 242370 348350 TRUE FALSE FALSE 286327.099 267175.8724 250269.5835 260904.6237 269035.4312 318953.1201 292342.8961 294177.385 263378.8267 261120.8926 1.096530791 1.023188416 0.958443352 0.999171767 1.030309863 1.22147683 1.119569151 1.12659459 1.008647083 1 17.99435837 -6.028331684 24.90379893 1.107045197 1.015194751 0.223369998 0.067030886 866.8586946 761974.5399 0.022148383 0.022194118 9.37E-07 6.028331684 -0.091850446 ERS(ph)PS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 ERSPSPLR 8 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 ERS(1)PS(1)PLR 91.784 0.0040203 5738800000 239690 234490 216420 299150 274140 171140 223320 179470 233450 348830 TRUE FALSE FALSE 293008.2136 261911.5657 296482.764 315491.807 246845.659 180100.6258 175605.8576 135454.7011 280301.2737 261873.1007 1.118893895 1.000146884 1.132161964 1.204750721 0.942615558 0.687740074 0.670576157 0.517253207 1.070370622 1 17.99850835 -6.024885138 4.206322906 0.754116499 1.106130618 0.475251148 0.158355307 0.170786997 6.967921533 0.051594462 0.054544344 9.44E-07 6.024885138 0.35201412 ERS(ph)PS(ph)PLR ddPTM_HeLa_A486_30min_R1 3 ERSPSPLR 8 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 ERS(1)PS(1)PLR;ERS(1)PS(1)PLR;ERS(1)PS(1)PLR ;; 89.805 0.0021433 4777900000 1123365 1473462 1078765 435214 1300705 1301728 1325359 1300883 1216778 1316354 TRUE FALSE FALSE 1044622.915 1356699.505 1496491.698 1013200.186 1137558.45 1141134.034 993740.16 1004700.339 1322249.297 986730.3904 1.058671066 1.374944481 1.516616609 1.026825764 1.152856405 1.156480073 1.007104037 1.01821161 1.340030985 1 19.91229642 -5.282424037 24.99154164 1.101632444 1.322564131 0.324917421 0.142942479 892.3911423 1062785.285 0.040113658 0.059573256 5.22E-06 5.282424037 0.220931687 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_HeLa_A485_30min_R1 5 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 ERS(1)PS(1)PLRGNVVPS(0.932)PLPT(0.068)R;ERS(1)PS(1)PLRGNVVPS(0.991)PLPT(0.009)R;ERS(1)PS(1)PLRGNVVPS(0.841)PLPT(0.159)R;ERS(1)PS(1)PLRGNVVPS(0.991)PLPT(0.009)R;ERS(1)PS(1)PLRGNVVPS(0.935)PLPT(0.065)R ;;;; 122.78 7.20E-06 17341900000 1806350 2131100 2216410 2221910 2862440 2243580 2546130 2371790 2160640 2851320 TRUE FALSE FALSE 2208166.326 2380313.607 3036352.292 2343287.317 2577445.423 2361050.38 2002128.526 1790104.784 2594260.629 2140538.399 1.031593886 1.112016308 1.418499333 1.094718655 1.204110809 1.103017064 0.935338757 0.836287163 1.211966406 1 21.02954229 -6.570201594 4.325485365 0.98340592 1.176832436 0.288508251 0.129597578 0.257340564 10.3932092 0.051019031 0.039631932 2.69E-07 6.570201594 0.193426517 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_HeLa_A486_30min_R1 7 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 ERS(0.971)PS(0.846)PLRGNVVPS(0.633)PLPT(0.55)R;ERS(1)PS(1)PLRGNVVPS(0.886)PLPT(0.115)R;ERS(1)PS(1)PLRGNVVPS(0.961)PLPT(0.039)R;ERS(1)PS(1)PLRGNVVPS(0.986)PLPT(0.014)R;ERS(1)PS(1)PLRGNVVPS(0.998)PLPT(0.002)R;ERS(1)PS(1)PLRGNVVPS(0.999)PLPT(0.001)R;ERS(1)PS(1)PLRGNVVPS(0.998)PLPT(0.002)R ;;;;;; 124.57 6.05E-06 21871150000 2209150 2672950 2306360 945021 3129340 2551230 2904080 2894400 2352220 2705300 TRUE FALSE FALSE 2054299.993 2461135.707 3199444.358 2200056.647 2736828.997 2236485.182 2177448.468 2235408.304 2556112.324 2027875.271 1.013030743 1.213652408 1.577732321 1.084907281 1.349604207 1.102871174 1.073758578 1.102340137 1.26048794 1 20.95153749 -6.287535196 22.82994195 1.112154449 1.255170721 0.169141628 0.154449686 482.5439634 422150.9824 0.05453358 0.048118541 5.16E-07 6.287535196 0.143016271 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_HeLa_A485_30min_R1 6 ERSPSPLRGNVVPSPLPTRR 20 3 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 ERS(1)PS(1)PLRGNVVPS(1)PLPTRR;ERS(1)PS(1)PLRGNVVPS(0.996)PLPT(0.004)RR;ERS(1)PS(1)PLRGNVVPS(0.994)PLPT(0.006)RR;ERS(1)PS(1)PLRGNVVPS(0.996)PLPT(0.004)RR;ERS(1)PS(1)PLRGNVVPS(0.996)PLPT(0.004)RR;ERS(1)PS(1)PLRGNVVPS(0.999)PLPT(0.001)RR ;;;;; 68.942 0.003845 28203670000 763137 1304082 1051301 857558 1432171 1298163 1566250 1976879 1035933 1136211 TRUE FALSE FALSE 932894.1929 1456583.046 1440220.988 904404.2221 1289579.027 1366132.807 1231607.892 1492046.326 1243835.251 852974.5081 1.093695279 1.707651321 1.688468969 1.06029455 1.511861157 1.601610358 1.443897655 1.749227335 1.458232619 1 19.7021431 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_HeLa_A486_30min_R1 2 ERSPSPLRGNVVPSPLPTRR 20 3 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 ERS(1)PS(1)PLRGNVVPS(1)PLPTRR;ERS(1)PS(1)PLRGNVVPS(0.997)PLPT(0.003)RR ; 71.506 0.0033498 10399700000 329642 334863 266319 130761 373900 306837 397500 367870 261765 360980 TRUE FALSE FALSE 306535.7981 308327.2363 369444.8491 304418.2163 327001.9755 268982.5706 298041.2957 284114.0315 284455.001 270588.2584 1.132849592 1.139470124 1.365339543 1.125023747 1.208485458 0.994065937 1.101456868 1.049986549 1.051246653 1 18.04573971 -6.25162351 24.51432938 1.046356964 1.196852166 0.549042033 0.07002006 430.3667468 1074806.33 0.023294016 0.02300235 5.60E-07 6.25162351 0.150495201 ERS(ph)PS(ph)PLRGNVVPSPLPTR ddPTM_HeLa_A485_30min_R1 4 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR ;;; 123.44 2.28E-05 6256000000 1169280 1255750 1264060 1516510 1615450 1136160 1465190 1270020 1298560 1908990 TRUE FALSE FALSE 1429382.302 1402599.039 1731688.396 1599353.101 1454610.126 1195647.581 1152140.187 958545.6037 1559169.081 1433113.925 0.997396143 0.978707285 1.208339662 1.115998577 1.014999645 0.834300442 0.803941799 0.668855132 1.087958922 1 20.45072187 -6.137507939 3.787379626 0.85375607 1.076704682 0.360740509 0.121900935 0.240489794 6.110606889 0.04177967 0.041964177 7.29E-07 6.137507939 0.222948612 ERS(ph)PS(ph)PLRGNVVPSPLPTR ddPTM_HeLa_A486_30min_R1 5 ERSPSPLRGNVVPSPLPTR 19 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR;ERS(1)PS(1)PLRGNVVPSPLPTR ;;;; 104.33 5.25E-05 5116180000 1767560 1925130 1647260 769312 2247480 2059030 2200450 2088240 1678300 1988620 TRUE FALSE FALSE 1643663.172 1772575.688 2285123.187 1790997.215 1965580.101 1805007.813 1649874.136 1612793.338 1823776.395 1490656.608 1.102643736 1.189124093 1.532964181 1.201482088 1.3186002 1.210881033 1.106810332 1.081934853 1.223471848 1 20.50751652 -6.607244904 3.388634961 1.10957759 1.275235664 0.30718376 0.117039985 0.321083811 7.352677445 0.048688492 0.036860206 2.47E-07 6.607244904 0.165658074 ERS(ph)PS(ph)PLRGNVVPSPLPTRR ddPTM_HeLa_A485_30min_R1 5 ERSPSPLRGNVVPSPLPTRR 20 3 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR ;;;; 100.93 0.00010478 5602640000 634529 1146050 932320 458642 1196650 1110790 1114660 1710670 819650 727330 TRUE FALSE FALSE 775677.787 1280070.578 1277223.965 483696.4511 1077507.324 1168949.247 876503.7851 1291125.5 984146.2367 546020.0165 1.420603208 2.344365663 2.339152277 0.88585846 1.973384293 2.140854202 1.605259438 2.364612031 1.802399559 1 19.05859431 -8.041214335 22.61776241 0.999999986 1.896192295 0.256325008 0.448766017 3490.557284 1915559.892 0.429300784 0.110844986 9.09E-09 8.041214335 0.896192308 ERS(ph)PS(ph)PLRGNVVPSPLPTRR ddPTM_HeLa_A486_30min_R1 6 ERSPSPLRGNVVPSPLPTRR 20 3 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR;ERS(1)PS(1)PLRGNVVPSPLPTRR ;;;;; 110.89 1.53E-05 5397050000 1207722 1260293 1257480 361557 1937350 965590 1112428 1360823 1038890 1021935 TRUE FALSE FALSE 1123066.924 1160422.793 1744409.932 841722.9681 1694349.498 846465.3232 834086.7483 1050993.309 1128941.822 766035.8243 1.466076245 1.514841416 2.277191062 1.098803661 2.211841071 1.104994435 1.088835172 1.371989764 1.473745464 1 19.54705234 -6.302289758 24.99149484 1.223719878 1.699839104 0.344593972 0.348199861 617.7478062 377924.6823 0.117484164 0.103612472 4.99E-07 6.302289758 0.476119226 ERS(ph)PS(ph)PPTIQSK ddPTM_HeLa_A485_30min_R1 2 ERSPSPPTIQSK 12 1 H0Y613;Q14687-2;Q14687-3;Q14687;H7C3B5 H0Y613 GSE1 Genetic suppressor element 1 2 0 ERS(0.999)PS(0.983)PPT(0.018)IQSK;ERS(0.964)PS(0.942)PPT(0.094)IQSK ; 88.551 0.0025761 1236200000 972110 905000 727150 1138980 1213050 1001470 1381130 1460680 900990 1499830 TRUE FALSE FALSE 1188352.516 1010831.878 996153.0442 1201199.593 1092274.483 1053905.421 1086040.293 1102445.94 1081810.429 1125949.983 1.055422118 0.89775913 0.884722287 1.066832107 0.970091477 0.93601442 0.964554651 0.979125144 0.960797944 1 20.10271131 -14 0.410796751 1.589740718 0.96544073 0.026215136 0.055290684 3913.126872 26.43739296 2076.374217 0.033830953 1.00E-14 14 -0.624299988 ERS(ph)PS(ph)PPTIQSK ddPTM_HeLa_A486_30min_R1 4 ERSPSPPTIQSK 12 1 H0Y613;Q14687-2;Q14687-3;Q14687;H7C3B5 H0Y613 GSE1 Genetic suppressor element 1 2 0 ERS(1)PS(0.999)PPT(0.001)IQSK;ERS(0.989)PS(0.982)PPT(0.029)IQSK;ERS(0.999)PS(0.997)PPT(0.004)IQSK;ERS(0.975)PS(0.568)PPT(0.446)IQS(0.011)K ;;; 75.535 0.009827 2316580000 1970810 2054490 1364160 778140 2140090 2153530 2443160 2533000 1708460 2485300 TRUE FALSE FALSE 1832666.396 1891684.73 1892399.285 1811549.245 1871659.957 1887849.364 1831855.527 1956291.195 1856550.688 1862964.703 0.98373651 1.015416302 1.01579986 0.972401271 1.004667428 1.013357559 0.983301253 1.050095684 0.996557093 1 20.82916891 ERS(ph)PS(ph)PSFR ddPTM_HeLa_A485_30min_R1 1 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 ERS(1)PS(0.998)PS(0.002)FR 64.65 0.024531 286410000 121850 144680 141280 119590 151600 133330 146900 129470 133130 144950 TRUE FALSE FALSE 148955.1121 161599.0675 193545.3512 126122.8989 136506.1717 140310.9526 115513.6149 97717.2795 159847.9699 108816.6326 1.368863459 1.485058521 1.778637571 1.159040634 1.25446054 1.289425608 1.061543738 0.89799948 1.468966334 1 16.73153956 -5.28815527 24.13354581 1.162405698 1.538273696 0.494251784 0.177303354 390.3316093 352601.4018 0.049894245 0.074033628 5.15E-06 5.28815527 0.375867997 ERS(ph)PS(ph)PSFR ddPTM_HeLa_A486_30min_R1 1 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 ERS(1)PS(0.991)PS(0.009)FR 72.496 0.014594 1876800000 700950 786670 606370 230950 709160 616120 696390 670920 564370 678750 TRUE FALSE FALSE 651817.0247 724331.4042 841172.7032 537663.2716 620210.5401 540109.3786 522145.8563 518166.1621 613290.046 508786.5821 1.281120705 1.423644864 1.653291837 1.056755997 1.218999404 1.061563724 1.026257128 1.018435195 1.205397445 1 18.9567011 -5.279528003 24.96559856 1.086978401 1.44978171 0.70491706 0.109319932 421.3807478 581581.2325 0.031082326 0.046204875 5.25E-06 5.279528003 0.362803309 ERS(ph)PS(ph)PSFRWPFSGK ddPTM_HeLa_A485_30min_R1 1 ERSPSPSFRWPFSGK 15 2 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 ERS(1)PS(0.968)PS(0.032)FRWPFSGK 91.64 0.00071365 108510000 78375 180270 101090 46076 155050 223620 257050 420010 95731 76675 TRUE FALSE FALSE 95809.24836 201351.0084 138487.3977 48593.01521 139612.6776 235328.3974 202129.1676 317001.8889 114943.3336 57561.3336 1.664472353 3.498025424 2.405910167 0.844195438 2.425459399 4.088306902 3.511544208 5.507201955 1.996884478 1 15.8128124 -6.12985384 6.040161778 3.514471216 2.15741685 0.125215186 1.294822239 0.38979733 17.52707034 0.41819584 0.419336004 7.42E-07 6.12985384 -1.357054366 ERS(ph)PSPLR ddPTM_HeLa_A485_30min_R1 8 ERSPSPLR 8 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 ERS(0.994)PS(0.006)PLR;ERS(0.999)PS(0.001)PLR;ERS(1)PSPLR;ERS(1)PSPLR;ERS(0.994)PS(0.006)PLR;ERS(0.987)PS(0.013)PLR;ERS(0.99)PS(0.01)PLR;ERS(0.996)PS(0.004)PLR ;;;;;;; 120.63 0.00036214 13930210000 1303197 1701736 1766659 1416467 2207494 1916562 2218238 2146913 1696181 2096378 TRUE FALSE FALSE 1593088.677 1900739.222 2420219.681 1493845.006 1987708.146 2016910.223 1744293.33 1620379.221 2036588.968 1573789.546 1.012262841 1.207746758 1.537829304 0.949202522 1.263007593 1.281562855 1.108339635 1.029603498 1.294066906 1 20.5858112 -10.14047903 0.29413438 0.884537536 1.213412258 0.096536135 0.164421636 38.70553365 2.650777112 3.82304088 0.191240519 7.24E-11 10.14047903 0.328874723 ERS(ph)PSPLR ddPTM_HeLa_A486_30min_R1 5 ERSPSPLR 8 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 ERS(0.996)PS(0.004)PLR;ERS(0.994)PS(0.006)PLR;ERS(0.996)PS(0.004)PLR;ERS(0.85)PS(0.15)PLR;ERS(0.995)PS(0.005)PLR ;;;; 108.9 0.00061963 8545060000 1455997 1515402 1081311 416650 1609985 1626044 1755417 1955429 1361637 1760577 TRUE FALSE FALSE 1353939.129 1395316.027 1500023.578 969982.2563 1408045.669 1425439.224 1316193.1 1510220.503 1479664.791 1319717.06 1.025931368 1.057284223 1.136625132 0.734992587 1.066929959 1.08010972 0.997329761 1.144351732 1.121198503 1 20.33179723 -5.956804425 24.99999974 1.073206593 0.991270913 0.119714246 0.105306477 314.9295673 182268.1211 0.033401486 0.037873686 1.10E-06 5.956804425 -0.08193568 ERS(ph)PSPSFR ddPTM_HeLa_A485_30min_R1 2 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 ERS(1)PSPSFR;ERS(0.996)PS(0.004)PSFR ; 106.38 0.00054098 696680000 46251 74593 78382 48388 78021 62829 77094 94311 61010 68769 TRUE FALSE FALSE 56539.37539 83316.00248 107378.7635 51031.31392 70252.95529 66118.62929 60622.2371 71181.07938 73254.14738 51626.1539 1.095169233 1.613833226 2.07992956 0.988477933 1.360801648 1.280719641 1.174254375 1.378779436 1.41893482 1 15.6558145 -5.287378534 24.99530695 1.250019136 1.598063198 0.291868044 0.260830819 970.3060269 934997.4254 0.073655016 0.10928718 5.16E-06 5.287378534 0.348044062 ERS(ph)PSPSFR ddPTM_HeLa_A486_30min_R1 4 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 ERS(0.999)PS(0.001)PSFR;ERS(1)PSPSFR;ERS(0.99)PS(0.01)PSFR;ERS(0.988)PS(0.011)PSFR ;;; 103.2 0.00068259 1501710000 146673 173532 164073 52917 187820 153593 163497 148864 164326 154872 TRUE FALSE FALSE 136391.9801 159780.6923 227606.4596 123193.4503 164261.8642 134644.2573 122588.3213 114970.9169 178569.91 116091.0432 1.174870829 1.376339535 1.960585877 1.061179631 1.414940031 1.159816069 1.055967093 0.990351312 1.538188521 1 16.82489714 ERS(ph)PYKR ddPTM_HeLa_A485_30min_R1 4 ERSPYKR 7 2 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8;F8VPY7 B7Z8L1 PPHLN1 Periphilin-1 1 0 ERS(1)PYKR;ERS(0.999)PY(0.001)KR;ERS(1)PYKR;ERS(1)PYKR ;;; 109.29 0.0013788 964908000 427517 240740 106941.7 504675 124511.3 468063 249951 385712 237471 466514 TRUE FALSE FALSE 522616.6817 268892.4488 146503.885 532244.1173 112114.5178 492570.0549 196546.9269 291115.5272 285129.2515 350220.6454 1.492249782 0.767780119 0.418318814 1.519739411 0.320125382 1.406456362 0.561208854 0.831234626 0.814141757 1 18.41790461 -4.257232477 24.00709995 0.842940597 1.492250242 0.217459017 0.366046723 356.4577673 2034020.317 0.083562778 0.62204595 5.53E-05 4.257232477 0.649309645 ERS(ph)PYKR ddPTM_HeLa_A486_30min_R1 3 ERSPYKR 7 2 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8;F8VPY7 B7Z8L1 PPHLN1 Periphilin-1 1 0 ERS(1)PYKR;ERS(0.999)PY(0.001)KR;ERS(0.996)PY(0.004)KR ;; 82.749 0.0046466 334506000 97651 32285.4 83524 61596 26374 233410 75361 70638 132023 144452 TRUE FALSE FALSE 90806.16917 29726.98732 115866.7297 143398.6009 23065.92699 204614.2473 56504.88071 54555.26942 143466.8599 108280.279 0.838621493 0.27453741 1.070063088 1.324327959 0.213020572 1.889672333 0.521839076 0.503833846 1.324958352 1 16.72441098 -4.777544038 24.94453416 0.964137157 0.556579328 0.112305206 0.47537667 454.5379965 704036.303 0.120009246 0.251066491 1.67E-05 4.777544038 -0.40755783 ERS(ph)RS(ph)PIER ddPTM_HeLa_A486_30min_R1 1 ERSRSPIER 9 2 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 2 0 ERS(1)RS(1)PIER 77.204 0.036953 1512800000 683110 682090 620730 277320 840780 645910 833270 906230 607930 792260 TRUE FALSE FALSE 635227.5166 628038.7043 861093.2797 645614.975 735321.5324 566224.1913 624777.0326 699901.2119 660625.8619 593872.9393 1.069635396 1.057530429 1.449962143 1.087126441 1.238179893 0.953443328 1.052038224 1.178536966 1.112402701 1 19.17979477 -6.240082854 24.84724666 1.069989908 1.183440105 0.199930478 0.120206822 1398.102463 1626622.919 0.040527559 0.040487156 5.75E-07 6.240082854 0.113450197 ERS(ph)RT(ph)GS(ph)ESSQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 ERSRTGSESSQTGTSTTSSR 20 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 3 0 ERS(0.992)RT(0.988)GS(0.755)ES(0.245)S(0.016)QT(0.001)GT(0.001)S(0.001)TTSSR 65.248 0.011413 51976000 67472 72867 69655 35896 98817 75757 81926 85181 71497 82424 TRUE FALSE FALSE 62742.56123 67092.75354 96627.28143 83567.70208 86422.45043 66410.87158 61427.24828 65787.14579 77694.41753 61784.49391 1.015506598 1.085915726 1.563940648 1.352567559 1.398772491 1.074879268 0.994217876 1.064784085 1.25750674 1 15.91495719 -6.281047787 23.62401914 1.077072815 1.291807381 0.292464459 0.159198223 563.3250485 678685.251 0.060432094 0.053391691 5.24E-07 6.281047787 0.214734566 ERS(ph)RT(ph)GSES(ph)SQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 ERSRTGSESSQTGTSTTSSR 20 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 3 0 ERS(0.993)RT(0.989)GS(0.058)ES(0.773)S(0.182)QT(0.003)GT(0.001)S(0.001)TTSSR 60.951 0.020828 204140000 108500 121720 125590 60556 140840 117970 129040 139340 114870 114700 TRUE FALSE FALSE 100894.7103 112074.4639 174221.8114 140977.4283 123174.5339 103416.0608 96752.82715 107615.3238 124827.0241 85978.37343 1.173489405 1.303519239 2.026344585 1.639684757 1.432622286 1.202814809 1.125315859 1.25165573 1.451842122 1 16.3916862 -6.106790503 3.600940933 1.217603013 1.553074423 0.306435777 0.234821621 0.335455402 7.960875199 0.086152724 0.087551846 7.82E-07 6.106790503 0.33547141 ERSDS(ph)GGS(ph)SSEPFDR ddPTM_HeLa_A485_30min_R1 2 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 ERS(0.371)DS(0.604)GGS(0.522)S(0.403)S(0.099)EPFDR;ERS(0.53)DS(0.585)GGS(0.824)S(0.05)S(0.011)EPFDR ; 136.35 3.53E-05 601410000 619740 834940 760320 583940 881810 819000 902090 1005900 731410 852980 TRUE FALSE FALSE 757599.0249 932578.97 1041594.008 615839.1636 794013.9002 861881.5736 709351.1021 759201.4478 878197.2781 640347.7839 1.183105562 1.456363235 1.626606719 0.961726079 1.239972902 1.345958548 1.107759127 1.185607988 1.371437991 1 19.28849614 -14 0.058109749 0.028404453 1.703680798 0.182016094 0.176972497 731.252191 3.10505519 103.8627395 18.26199814 1.00E-14 14 1.675276345 ERSDS(ph)GGS(ph)SSEPFDR ddPTM_HeLa_A486_30min_R1 4 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 ERS(0.259)DS(0.743)GGS(0.935)S(0.033)S(0.029)EPFDR;ERS(0.017)DS(0.99)GGS(0.934)S(0.022)S(0.037)EPFDR;ERS(0.25)DS(0.782)GGS(0.911)S(0.047)S(0.01)EPFDR;ERS(0.444)DS(0.591)GGS(0.898)S(0.053)S(0.013)EPFDR ;;; 166.77 1.99E-11 1228510000 1636890 1825310 1359320 640351 1920650 1580760 1899920 1795490 1359860 1729500 TRUE FALSE FALSE 1522152.464 1680665.788 1885685.108 1490769.49 1679744.168 1385741.903 1424539.921 1386696.122 1477733.76 1296421.943 1.174118097 1.296387952 1.454530385 1.14991072 1.295677057 1.068897291 1.09882429 1.069633332 1.13985556 1 20.30610391 -6.262294736 24.90019059 1.081255558 1.278483432 0.585545869 0.08346537 55.20251541 1606970.586 0.028636068 0.026722795 5.47E-07 6.262294736 0.197227874 ERSDS(ph)GGSSSEPFDR ddPTM_HeLa_A485_30min_R1 2 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 ERSDS(0.949)GGS(0.024)S(0.024)S(0.003)EPFDR;ERSDS(0.656)GGS(0.038)S(0.153)S(0.153)EPFDR ; 225.17 1.29E-32 1584600000 569220 843800 791710 690390 1098100 938550 984220 1091620 893130 1020480 TRUE FALSE FALSE 695841.0252 942475.0699 1084596.475 728104.2575 988769.3083 987691.0267 773933.3567 823898.4834 1072372.999 766093.1165 0.908298234 1.230235659 1.415750189 0.950412217 1.290664655 1.289257148 1.010234056 1.075454753 1.399794588 1 19.54716023 -9.401080595 8.443818738 0.999995234 1.17565627 0.084503034 0.17222489 0 0 0.162117682 0.039319313 3.97E-10 9.401080595 0.175661036 ERSDS(ph)GGSSSEPFDR ddPTM_HeLa_A486_30min_R1 2 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 ERSDS(0.847)GGS(0.005)S(0.039)S(0.109)EPFDR;ERSDS(0.97)GGS(0.023)S(0.005)S(0.001)EPFDR ; 191 4.83E-17 1243080000 1033350 1139120 925910 411000 1268170 1064550 1207340 1319590 1044150 1241270 TRUE FALSE FALSE 960917.5012 1048851.983 1284447.149 956828.7708 1109104.293 933216.6446 905250.7621 1019148.163 1134657.763 930447.9127 1.032747226 1.127254915 1.3804611 1.028352859 1.192011157 1.002975698 0.972919332 1.0953307 1.219474779 1 19.82756586 -6.254026687 24.76393876 1.058771972 1.156586147 0.149555511 0.111854855 1024.491993 3422569.102 0.038260757 0.037480913 5.57E-07 6.254026687 0.097814175 ERSDYDRS(ph)R ddPTM_HeLa_A485_30min_R1 4 ERSDYDRSR 9 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERSDYDRS(1)R;ERSDYDRS(1)R;ERSDYDRS(1)R;ERSDYDRS(1)R ;;; 147.26 6.26E-05 5576020000 956890 1748344 1551162 1418182 2001347 1876142 2335094 3548750 2051479 2023759 TRUE FALSE FALSE 1169746.879 1952797.622 2125001.373 1495653.692 1802085.866 1974373.894 1836182.091 2678413.498 2463192.018 1519273.126 0.769938505 1.285349941 1.398696085 0.984453464 1.186150031 1.299551648 1.208592491 1.762957202 1.621296379 1 20.53494982 -7.121842634 7.547090726 1.51815604 1.172166945 0.225187017 0.248350699 0.342798493 19.68658188 0.113768771 0.065489571 7.55E-08 7.121842634 -0.345989095 ERSDYDRS(ph)R ddPTM_HeLa_A486_30min_R1 2 ERSDYDRSR 9 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 ERSDYDRS(1)R;ERSDYDRS(1)R ; 148.78 5.63E-05 2597300000 1073070 739330 1685960 648010 1292540 1644650 1451000 1411520 1442620 1255820 TRUE FALSE FALSE 997853.3343 680742.7982 2338808.864 1508600.029 1130417.581 1441749.805 1087944.453 1090147.709 1567667.463 941354.498 1.060018661 0.723152436 2.484514461 1.602584395 1.200841535 1.531569465 1.155722372 1.158062889 1.665331675 1 19.84437859 -6.758290781 24.93348563 1.257951148 1.446324344 0.038592248 0.457702994 354.026505 2803537.964 0.188986136 0.140087724 1.74E-07 6.758290781 0.188373196 ERSPALK ddPTM_HeLa_A485_30min_R1 1 ERSPALK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 89.752 0.0088289 321650000 219810 174670 135120 336090 220860 190680 280740 201890 215990 436500 FALSE FALSE TRUE 268705.9762 195096.1371 185106.5108 354449.7457 198870.4029 200663.71 220757.6056 152376.1609 259337.2118 327688.5832 0.820004083 0.595370565 0.564885444 1.081666448 0.606888409 0.612361004 0.673681101 0.465002959 0.791413632 1 18.32196588 -8.010464634 24.77321292 1.00000002 0.676589045 0.275558883 0.16046503 563.3046251 1333528.754 0.155115673 0.040050695 9.76E-09 8.010464634 -0.323410975 ERSPALK ddPTM_HeLa_A486_30min_R1 2 ERSPALK 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 ; ; 110.81 0.0037804 573550000 499100 383900 270777 188099 361480 629750 574090 471400 434060 618990 FALSE FALSE TRUE 464115.6674 353478.3659 375629.1061 437903.978 316139.8077 552057.8478 430446.6099 364072.5106 471684.6703 463990.8751 1.000268954 0.761821805 0.809561408 0.943777133 0.681349192 1.189803243 0.927704903 0.784654462 1.016581781 1 18.82373691 -6.241848677 24.99543515 0.966787077 0.839194236 0.244422291 0.12517223 1390.951998 1774692.726 0.04105365 0.040998273 5.73E-07 6.241848677 -0.127592841 ERTS(ph)TSSSSVQAR ddPTM_HeLa_A485_30min_R1 3 ERTSTSSSSVQAR 13 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 ERT(0.209)S(0.732)T(0.041)S(0.015)S(0.002)S(0.001)SVQAR;ERT(0.212)S(0.647)T(0.135)S(0.006)SSSVQAR;ERT(0.083)S(0.905)T(0.009)S(0.003)SSSVQAR ;; 100.04 0.00016848 0 277583 373117 367963 490351 428016 356921 384906 490394 391116 638820 TRUE FALSE FALSE 339330.3807 416749.7875 504087.8259 517137.6335 385401.2242 375608.8317 302667.6887 370124.1026 469609.3937 479573.9306 0.707566361 0.869000087 1.051115988 1.078327241 0.803632557 0.783213615 0.631117893 0.771776944 0.979222105 1 18.87139371 -5.897300864 23.65055197 0.804603499 0.932515008 0.093975796 0.137938154 14.91182043 3400.541241 0.044957561 0.050977081 1.27E-06 5.897300864 0.127911509 ERTS(ph)TSSSSVQAR ddPTM_HeLa_A486_30min_R1 3 ERTSTSSSSVQAR 13 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 ERT(0.211)S(0.777)T(0.012)SSSSVQAR;ERT(0.004)S(0.933)T(0.047)S(0.015)SSSVQAR;ERT(0.281)S(0.709)T(0.006)S(0.001)S(0.001)SSVQAR ;; 120.59 4.23E-05 92867000 225189 246938 334055 165739.3 382199 400820 324331 313725 312961 336079 TRUE FALSE FALSE 209404.414 227369.7335 463410.0423 385849.4664 334260.0376 351370.9036 243179.9534 242296.6661 340088.7115 251922.6309 0.8312251 0.902537945 1.839493501 1.531618914 1.326836086 1.394757201 0.96529618 0.961789996 1.349972848 1 17.9426212 -6.757641795 24.99888793 1.066080579 1.321813316 0.134801755 0.289796725 210.3108727 1384454.427 0.123462048 0.09190762 1.75E-07 6.757641795 0.255732737 ERVDDSTGTVIS(ph)DVEEDAGELSR ddPTM_HeLa_A485_30min_R1 4 ERVDDSTGTVISDVEEDAGELSR 23 1 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDS(0.003)T(0.003)GT(0.007)VIS(0.987)DVEEDAGELSR;ERVDDS(0.111)T(0.111)GT(0.111)VIS(0.667)DVEEDAGELSR ;;; 274.76 4.55E-75 1539117000 273119.6 357413 295413 294716 425236 355903.4 451613 490594 296889.1 383303 TRUE FALSE FALSE 333874.1128 399209.3413 404698.5619 310815.5888 382898.0107 374537.9517 355122.1932 370275.0523 356472.0191 287752.6163 1.160281763 1.387335227 1.406411407 1.080148611 1.330649972 1.301597033 1.234123247 1.286782574 1.238814172 1 18.13446952 -12.65554859 0.328546429 4.00E-11 1.286018398 0.430138401 0.093398054 125.0805011 2.521123034 85.34109536 0.080185062 2.21E-13 12.65554859 1.286018398 ERVDDSTGTVIS(ph)DVEEDAGELSR ddPTM_HeLa_A486_30min_R1 3 ERVDDSTGTVISDVEEDAGELSR 23 1 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDS(0.005)T(0.005)GT(0.005)VIS(0.986)DVEEDAGELSR;ERVDDS(0.001)T(0.001)GT(0.001)VIS(0.998)DVEEDAGELSR ;; 162.1 1.08E-14 783456000 249001 284236 216771 119335 315124 261342 284077 291683 231367 304947 TRUE FALSE FALSE 231547.3157 261712.1042 300710.5365 277817.9109 275598.2095 229100.2812 212997.9299 225273.1483 251422.0778 228586.2863 1.012953662 1.144916033 1.315523085 1.215374357 1.205663795 1.002248581 0.931805374 0.985505963 1.099900094 1 17.80237933 -6.265868873 23.89025306 0.998480692 1.18661702 0.540826791 0.080387074 164.0979168 885049.5558 0.029684088 0.027097138 5.42E-07 6.265868873 0.188136328 ERVPS(ph)VAEAPQLRPAGTAAAK ddPTM_HeLa_A485_30min_R1 2 ERVPSVAEAPQLRPAGTAAAK 21 2 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 ERVPS(1)VAEAPQLRPAGTAAAK;ERVPS(1)VAEAPQLRPAGTAAAK ; 220.6 6.84E-36 3823700000 1497760 1687910 1319270 1345840 1609850 1863270 2081060 2293640 1386340 1876260 TRUE FALSE FALSE 1830931.545 1885296.392 1807322.872 1419359.831 1449567.681 1960827.936 1636424.53 1731121.194 1664565.722 1408542.912 1.299876297 1.338472812 1.283115237 1.00767951 1.02912568 1.392096697 1.161785357 1.229015587 1.181764295 1 20.42577209 -5.023591779 24.006443 1.15796996 1.317079472 0.308223586 0.111955231 583.9738984 594239.7507 0.031343249 0.05477073 9.47E-06 5.023591779 0.159109512 ERVPS(ph)VAEAPQLRPAGTAAAK ddPTM_HeLa_A486_30min_R1 3 ERVPSVAEAPQLRPAGTAAAK 21 2 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 ERVPS(1)VAEAPQLRPAGTAAAK;ERVPS(1)VAEAPQLRPAGTAAAK;ERVPS(1)VAEAPQLRPAGTAAAK ;; 204.66 6.20E-27 3578620000 1068750 1116710 900090 360455 1317010 892280 943750 1000490 698430 1033160 TRUE FALSE FALSE 993836.144 1028217.833 1248628.953 839157.4564 1151818.325 782199.5656 707613.768 772700.2675 758970.4747 774450.0113 1.283279914 1.327674889 1.612278307 1.083552772 1.487272656 1.010006526 0.913698441 0.997740663 0.98001222 1 19.56281259 -6.330520905 6.673617748 0.97327919 1.355437793 0.679363726 0.130039077 0.144676146 11.66402389 0.044379292 0.039136741 4.67E-07 6.330520905 0.382158603 ES(ph)EELLK ddPTM_HeLa_A485_30min_R1 2 ESEELLK 7 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 ES(1)EELLK;ES(1)EELLK ; 130.75 0.001671 739560000 935790 737410 500060 1244150 962600 800060 1243090 1059480 817850 1829800 TRUE FALSE FALSE 1143953.257 823643.6849 685053.0032 1312114.764 866760.1641 841949.9045 977493.6664 799640.8688 981984.9932 1373664.535 0.832774835 0.599595945 0.498704732 0.955193012 0.63098387 0.612922503 0.71159562 0.58212238 0.714865215 1 20.38959829 -8.040174738 21.07994319 1.000000005 0.67430193 0.371188208 0.124884186 974.7589064 511463.1441 0.117887446 0.030438393 9.12E-09 8.040174738 -0.325698075 ES(ph)EELLK ddPTM_HeLa_A486_30min_R1 2 ESEELLK 7 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 ES(1)EELLK;ES(1)EELLK ; 128.38 0.0017085 856470000 1194570 998530 411840 580310 926760 1348420 1657310 1597740 830380 1793190 TRUE FALSE FALSE 1110836.812 919402.8462 571315.4775 1350991.007 810517.1191 1182065.65 1242633.509 1233969.48 902358.007 1344163.552 0.826414918 0.683996263 0.425034198 1.005079333 0.602989954 0.879406117 0.924466005 0.918020339 0.671315634 1 20.35827726 -6.039876267 1.178863755 0.876678374 0.684466339 0.184107617 0.163466395 0.804485085 2.343277814 0.074952953 0.082933345 9.12E-07 6.039876267 -0.192212036 ES(ph)GGSGFRSPHLWK ddPTM_HeLa_A485_30min_R1 1 ESGGSGFRSPHLWK 14 1 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 ES(0.356)GGS(0.356)GFRS(0.288)PHLWK 61.692 0.015268 205010000 186860 217360 184210 158750 290270 265770 277650 360720 243380 261150 TRUE FALSE FALSE 228426.3623 242778.3612 252356.9446 167422.1105 261369.6996 279685.3062 218327.8093 272252.8544 292224.1336 196050.1111 1.165142733 1.238348501 1.287206333 0.853976106 1.333178023 1.426601111 1.113632673 1.388690131 1.490558368 1 17.58086293 ES(ph)GGSGFRSPHLWK ddPTM_HeLa_A486_30min_R1 1 ESGGSGFRSPHLWK 14 1 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 ES(0.382)GGS(0.382)GFRS(0.236)PHLWK 52.887 0.027871 165700000 171560 174240 127340 38732 220750 166670 190120 196900 150880 184570 TRUE FALSE FALSE 159534.5299 160432.5878 176649.4583 90170.05341 193061.4766 146107.95 142549.9651 152070.1683 163958.3999 138352.4707 1.15310214 1.159593226 1.2768074 0.651741548 1.395432085 1.056055951 1.030339136 1.099150363 1.185077499 1 17.07798888 ES(ph)HTPVS(ph)IQEEIVGDFK ddPTM_HeLa_A485_30min_R1 1 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 2 0 ES(0.529)HT(0.529)PVS(0.942)IQEEIVGDFK 74.786 0.0055552 16758000 14250 16931 13210 15466 18242 18696 22694 23136 18265 21686 TRUE FALSE FALSE 17419.86334 18910.93317 18096.92871 16310.86842 16425.76243 19674.89365 17845.24151 17461.85972 21930.61796 16280.0793 1.070010963 1.161599573 1.111599543 1.001891214 1.008948551 1.208525664 1.096139716 1.072590581 1.347082994 1 13.99082011 -6.262971581 24.99909992 1.146359195 1.074291105 0.129012645 0.095960376 319.2540443 5208853.48 0.032688855 0.03041764 5.46E-07 6.262971581 -0.07206809 ES(ph)HTPVS(ph)IQEEIVGDFK ddPTM_HeLa_A486_30min_R1 1 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 2 0 ES(0.542)HT(0.461)PVS(0.997)IQEEIVGDFK 117.01 8.18E-05 20528000 26192 29434 19252 11942 24059 24047 33001 31153 24258 33849 TRUE FALSE FALSE 24356.07606 27101.54264 26706.88999 27801.57952 21041.29588 21080.32563 24743.80075 24060.14197 26360.70297 25372.99008 0.959921396 1.068125694 1.052571648 1.09571554 0.829279317 0.830817557 0.975202397 0.948258045 1.038927729 1 14.63100592 -5.744370427 24.99999949 0.931086633 1.046407157 0.355168269 0.070327286 275.6315673 403701.2895 0.021952465 0.028267082 1.80E-06 5.744370427 0.115320524 ES(ph)HTPVSIQEEIVGDFK ddPTM_HeLa_A485_30min_R1 1 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 ES(0.56)HT(0.439)PVS(0.001)IQEEIVGDFK 169.84 3.04E-12 97064000 182930 187740 148700 218090 205420 197040 242060 246040 176050 304490 TRUE FALSE FALSE 223622.1474 209694.5599 203710.3179 230003.7045 184967.6635 207356.7097 190341.9036 185698.3042 211381.6202 228586.2467 0.978283473 0.917354228 0.891174867 1.006200976 0.809181069 0.907126797 0.832691845 0.812377415 0.924734638 1 17.80237908 -5.762843732 24.99958617 0.870526574 0.941969259 0.207767641 0.061844924 54.07054813 962543.5304 0.017930446 0.021438949 1.73E-06 5.762843732 0.071442684 ES(ph)HTPVSIQEEIVGDFK ddPTM_HeLa_A486_30min_R1 2 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 ES(0.5)HT(0.5)PVSIQEEIVGDFK;ES(0.565)HT(0.433)PVS(0.002)IQEEIVGDFK ; 178.22 7.54E-14 215631000 439000 418670 250670 151881 349760 385140 476530 423380 350580 505740 TRUE FALSE FALSE 408228.367 385493.0644 347736.1372 353586.6436 305889.8394 337625.3426 357297.1538 326985.6163 380968.5567 379099.4122 1.076837246 1.016865371 0.917268996 0.93270164 0.806885555 0.890598433 0.942489337 0.862532639 1.004930486 1 18.53221669 -4.61633928 2.303107855 0.909374904 1.077623239 0.454093697 0.056716324 0.277516405 2.671195113 0.015060768 0.069576057 2.42E-05 4.61633928 0.168248335 ES(ph)KTPPPYSVYER ddPTM_HeLa_A486_30min_R1 1 ESKTPPPYSVYER 13 1 C9J637;A0A590UJ51;H0Y7H7;H0Y599;Q8N1I0-2;Q8N1I0;Q8N1I0-3;Q8N1I0-4 C9J637 DOCK4 Dedicator of cytokinesis protein 4 1 0 ES(0.701)KT(0.299)PPPYSVYER 53.169 0.008909 0 203840 177500 106220 129260 194130 251640 340280 305410 156340 390480 TRUE FALSE FALSE 189551.8686 163434.2536 147351.2287 300923.8124 169780.4052 220595.2153 255138.3449 235874.8101 169891.6771 292701.2664 0.647594973 0.558365379 0.503418487 1.028091939 0.580046705 0.753653095 0.871668059 0.805855106 0.58042686 1 18.15906946 -10.4607058 0.047157518 1.861300896 3.07E-15 0.272637601 0.152683429 372.9778163 2.886165798 77.54376052 40.37168756 3.46E-11 10.4607058 -1.861300896 ES(ph)PEGSYTDDANQEVR ddPTM_HeLa_A485_30min_R1 3 ESPEGSYTDDANQEVR 16 0 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 ES(0.999)PEGS(0.001)YTDDANQEVR;ES(0.987)PEGS(0.012)YT(0.001)DDANQEVR;ES(1)PEGSYTDDANQEVR ;; 311.09 3.83E-78 730260000 245062 244510 166114 235862 187182 194748 248292 219255 203365 284546 TRUE FALSE FALSE 299575.1964 273103.3175 227566.4812 248746.5438 168545.5028 204944.7041 195242.3858 165482.3675 244178.4901 213613.9189 1.402414215 1.278490273 1.065316728 1.164467864 0.789019291 0.959416433 0.913996554 0.774679704 1.143083238 1 17.70464613 -4.737282387 0.955903081 0.92516881 1.486812054 0.641764129 0.115364138 0.630398832 0.753237609 0.040232826 0.315639554 1.83E-05 4.737282387 0.561643244 ES(ph)PEGSYTDDANQEVR ddPTM_HeLa_A486_30min_R1 4 ESPEGSYTDDANQEVR 16 0 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 ES(1)PEGSYTDDANQEVR;ES(0.998)PEGS(0.002)YTDDANQEVR;ES(1)PEGSYTDDANQEVR;ES(1)PEGSYTDDANQEVR ;;; 401.36 3.82E-152 1658580000 782560 763020 434436 227710 529800 640481 706079 602024 624582 940430 TRUE FALSE FALSE 727706.5851 702555.5163 602661.2538 530120.3878 463347.5438 561464.9662 529410.5661 464956.2773 678721.2706 704940.2068 1.032295474 0.996617173 0.854911165 0.752007593 0.657286305 0.796471758 0.751000668 0.65956839 0.962806865 1 19.42714137 -4.843977983 2.629641289 0.775724877 1.027264125 0.381136905 0.107147811 0.243358037 3.342521258 0.028081937 0.079029348 1.43E-05 4.843977983 0.251539248 ES(ph)PGAAATSSSGPQAQQHR ddPTM_HeLa_A485_30min_R1 3 ESPGAAATSSSGPQAQQHR 19 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 ES(1)PGAAATSSSGPQAQQHR;ES(1)PGAAATSSSGPQAQQHR;ES(1)PGAAATSSSGPQAQQHR ;; 251.02 1.14E-46 2895990000 709700 915420 805220 677726 858740 757300 840610 717020 688430 944810 TRUE FALSE FALSE 867570.3166 1022470.406 1103104.386 714748.4553 773240.8304 796951.057 661006.8063 541169.7208 826591.5863 709286.2549 1.223159635 1.441548315 1.555231584 1.007700982 1.09016751 1.1235958 0.93193235 0.762977877 1.165385034 1 19.43600846 -5.274990187 24.34766668 1.006414642 1.410136682 0.661031806 0.129564303 319.5977557 574242.7016 0.037829246 0.05648288 5.31E-06 5.274990187 0.40372204 ES(ph)PGAAATSSSGPQAQQHR ddPTM_HeLa_A486_30min_R1 4 ESPGAAATSSSGPQAQQHR 19 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 ES(1)PGAAATSSSGPQAQQHR;ES(1)PGAAATSSSGPQAQQHR;ES(1)PGAAATSSSGPQAQQHR;ES(0.999)PGAAAT(0.001)SSSGPQAQQHR ;;; 266.46 1.20E-58 4879400000 1430330 1621010 1056133 205120 1318060 1258360 1317429 1254719 1259440 1296141 TRUE FALSE FALSE 1330071.253 1492555.264 1465095.982 477529.7262 1152736.624 1103116.337 987794.3299 969046.874 1368609.273 971578.8571 1.368979207 1.536216287 1.507953751 0.49149868 1.186457091 1.135385285 1.016689816 0.99739395 1.408644562 1 19.88997157 ES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 2 ESPGSSEFFQEAVSHGK 17 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 ES(0.994)PGS(0.005)S(0.001)EFFQEAVSHGK;ES(0.999)PGS(0.001)SEFFQEAVSHGK ; 235.21 2.46E-42 466640000 715640 616720 422300 796410 535890 580600 685310 521630 536500 1021300 TRUE FALSE FALSE 874831.6491 688840.0392 578526.3434 839915.8617 482534.91 610999.3182 538887.92 393699.4246 644170.6289 766708.7056 1.141022193 0.898437743 0.754558203 1.095482359 0.629358851 0.796911935 0.702858747 0.513492832 0.84017649 1 19.54831904 -5.769204038 24.99989505 0.723083001 0.951535539 0.320409395 0.157229559 203.2913395 654536.3392 0.047178585 0.054479865 1.70E-06 5.769204038 0.228452538 ES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 2 ESPGSSEFFQEAVSHGK 17 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 ES(0.999)PGS(0.001)SEFFQEAVSHGK;ES(0.832)PGS(0.129)S(0.039)EFFQEAVSHGK ; 289.35 1.23E-61 657460000 774900 858210 374194 233512 470340 857600 786560 635500 681870 1006810 TRUE FALSE FALSE 720583.5116 790202.3141 519091.9381 543627.737 411345.5715 751798.0314 589754.3686 490810.5229 740975.0406 754698.2228 0.954796884 1.04704409 0.687813913 0.720324655 0.545046429 0.996157151 0.781443961 0.650340107 0.981816332 1 19.52554035 -4.754493241 24.99989685 0.777933566 1.000920555 0.224807423 0.149909047 209.5849148 754299.6282 0.037352166 0.094361588 1.76E-05 4.754493241 0.222986989 ES(ph)PHFYR ddPTM_HeLa_A485_30min_R1 2 ESPHFYR 7 0 Q9HDC5 Q9HDC5 JPH1 Junctophilin-1 1 0 ES(1)PHFYR;ES(1)PHFYR ; 93.598 0.0043866 590750000 605250 706760 506670 601290 584630 588070 568180 772660 577430 1090640 TRUE FALSE FALSE 739885.7744 789409.434 694108.3173 634136.9502 526422.1844 618860.4359 446783.7014 583163.9235 693314.9045 818763.5197 0.90366236 0.964148274 0.847751885 0.774505623 0.642947776 0.755847593 0.545681006 0.712249519 0.846782847 1 19.6430873 -5.148346414 2.340823471 0.726044363 0.932443128 0.264040122 0.115670359 0.33612603 3.584000654 0.032866732 0.068684426 7.11E-06 5.148346414 0.206398766 ES(ph)PHFYR ddPTM_HeLa_A486_30min_R1 3 ESPHFYR 7 0 Q9HDC5 Q9HDC5 JPH1 Junctophilin-1 1 0 ES(1)PHFYR;ES(1)PHFYR;ES(1)PHFYR ;; 107.57 0.0032517 440030000 762190 815130 680790 219414 879110 736080 730520 684910 737630 795970 TRUE FALSE FALSE 708764.417 750536.1301 944410.1202 510806.8806 768843.8264 645269.9335 547736.1693 528970.9445 801568.3623 596653.9311 1.18789868 1.257908632 1.582844042 0.856119191 1.288592577 1.081481073 0.918013174 0.886562406 1.343439338 1 19.18653486 -5.2677703 24.99982114 1.054053027 1.33438627 0.356448326 0.178102162 563.3588965 2224618.315 0.049593654 0.075645392 5.40E-06 5.2677703 0.280333243 ES(ph)PRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A485_30min_R1 2 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 41 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 2 0 ES(1)PRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ES(1)PRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR ; 194.37 5.04E-23 525250000 9963.3 17848.1 11386.7 3318.4 20235.4 22649 25905 27182 13597 15372 TRUE FALSE FALSE 12179.60171 19935.28004 15599.11417 3499.675789 18220.69253 23834.86662 20370.18513 20515.57188 16325.79318 11540.0433 1.055420798 1.727487455 1.351737924 0.303263662 1.578910239 2.065405302 1.765174063 1.777772522 1.414708139 1 13.49436102 -5.974737822 24.99978801 1.680913905 1.142195502 0.232874948 0.423867366 314.3031083 311037.0645 0.133526998 0.151400325 1.06E-06 5.974737822 -0.538718404 ES(ph)PSLASR ddPTM_HeLa_A485_30min_R1 3 ESPSLASR 8 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 ES(0.999)PS(0.001)LASR;ES(0.998)PS(0.002)LASR;ES(0.99)PS(0.01)LASR ;; 209.73 7.33E-07 5082700000 5737900 5938100 5190430 5990030 5683950 4708960 5669330 4828600 4983340 7222590 TRUE FALSE FALSE 7014276.059 6632509.14 7110586.049 6317250.171 5118035.98 4955513.864 4458031.331 3644378.279 5983450.628 5422131.235 1.293638194 1.223229179 1.31140058 1.165086181 0.943915918 0.913942074 0.822191706 0.672130224 1.103523756 1 22.3704286 -5.723706462 2.238837891 0.877826162 1.272345567 0.706661317 0.108388648 0.155604065 1.599601008 0.035341236 0.046459499 1.89E-06 5.723706462 0.394519405 ES(ph)PSLASR ddPTM_HeLa_A486_30min_R1 5 ESPSLASR 8 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 ES(1)PSLASR;ES(1)PSLASR;ES(0.993)PS(0.007)LASR;ES(0.909)PS(0.091)LASR;ES(0.996)PS(0.004)LASR ;;;; 227.99 4.98E-09 5742450000 6402660 7801840 4530390 1887203 5523050 6364390 6308510 5864680 5797330 7254240 TRUE FALSE FALSE 5953866.597 7183593.785 6284678.336 4393503.958 4830297.569 5579216.27 4730054.073 4529420.389 6299847.232 5437731.087 1.094917439 1.321064552 1.155753794 0.80796639 0.888292836 1.026019158 0.869858034 0.832961453 1.158543358 1 22.37457338 -5.114408898 5.729443063 0.93283241 1.214849201 0.520632698 0.110332431 0.160749514 6.978054083 0.029180004 0.05164752 7.68E-06 5.114408898 0.282016791 ES(ph)PSPAPKPR ddPTM_HeLa_A485_30min_R1 3 ESPSPAPKPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 ES(0.998)PS(0.002)PAPKPR;ES(0.974)PS(0.026)PAPKPR;ES(0.998)PS(0.002)PAPKPR ;; 155.02 7.24E-07 296382000 1138070 1254020 861940 1391170 1490850 1385120 1824860 2022990 1058940 1908230 TRUE FALSE FALSE 1391229.745 1400666.73 1180807.474 1467166.094 1342415.739 1457642.741 1434963.753 1526848.531 1271459.545 1432543.379 0.97116064 0.977748214 0.824273451 1.024168703 0.937085577 1.017520839 1.001689564 1.065830573 0.887553957 1 20.4501474 ES(ph)PSPAPKPR ddPTM_HeLa_A486_30min_R1 3 ESPSPAPKPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 ES(0.997)PS(0.003)PAPKPR;ES(0.998)PS(0.002)PAPKPR;ES(1)PSPAPKPR ;; 189.13 3.66E-10 843140000 1733330 1780700 1044590 774010 1696960 1886380 2179540 2156820 1408370 2346330 TRUE FALSE FALSE 1611832.518 1639590.847 1449083.223 1801934.396 1484111.453 1653657.615 1634196.039 1665759.169 1530448.646 1758793.696 0.91644206 0.932224655 0.823907447 1.024528573 0.843823501 0.940222619 0.929157321 0.947103218 0.870169508 1 20.74615484 -11.21618087 2.443993902 1.285587449 0.91540306 0.182959646 0.054354088 5384728.563 1871558.484 8465362.739 0.012924288 6.08E-12 11.21618087 -0.370184389 ES(ph)RPSEEREWDREK ddPTM_HeLa_A486_30min_R1 1 ESRPSEEREWDREK 14 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 ES(0.623)RPS(0.377)EEREWDREK 80.975 0.025584 772030000 250780 341580 525310 205250 611720 295280 403660 476340 275500 329960 TRUE FALSE FALSE 233201.617 314511.9568 728724.1003 477832.3728 534992.3735 258851.3558 302659.9985 367887.7804 299380.5618 247335.8683 0.942854017 1.271598652 2.946293658 1.931917016 2.163019772 1.046558097 1.223680175 1.487401657 1.210421132 1 17.91611195 -6.266734547 24.94550367 1.225954052 1.884269929 0.289892333 0.511989819 628.9657405 2963044.838 0.190191061 0.172644755 5.41E-07 6.266734547 0.658315877 ES(ph)RSPQQSAALPR ddPTM_HeLa_A485_30min_R1 1 ESRSPQQSAALPR 13 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ES(0.536)RS(0.464)PQQSAALPR 152.94 2.14E-08 826000000 303570 414870 328900 577960 602460 466750 695710 731350 330530 740390 TRUE FALSE FALSE 371098.0992 463385.4376 450573.7967 609532.4913 542476.967 491188.3083 547065.8751 551985.2658 396864.3392 555824.3989 0.667653489 0.83369035 0.81064055 1.096627806 0.975986243 0.883711311 0.984242283 0.993092903 0.714010288 1 19.08426964 -4.540628339 1.568068173 0.945836425 0.652151997 0.414427792 0.100142786 0.623829984 2.165573337 0.028654945 0.240722642 2.88E-05 4.540628339 -0.293684427 ES(ph)RSQSMKEPGFIK ddPTM_HeLa_A485_30min_R1 1 ESRSQSMKEPGFIK 14 2 C9K0I1;A4D1F6 C9K0I1 LRRD1 Leucine-rich repeat and death domain-containing protein 1 1 0 ES(0.333)RS(0.333)QS(0.333)MKEPGFIK 58.21 0.025501 263020000 95746 114600 131640 130880 171820 116780 142250 143260 119150 160550 TRUE FALSE FALSE 117044.3674 128001.4731 180339.114 138029.643 154712.9975 122894.4202 111857.1254 108125.2604 143062.3121 120527.8397 0.971098193 1.062007528 1.496244473 1.145209632 1.283628727 1.019635136 0.928060485 0.897097804 1.186964874 1 16.8790069 -6.363196811 6.127427075 0.992293886 1.198300906 0.278464516 0.148487011 0.314431612 15.947907 0.054470176 0.047879882 4.33E-07 6.363196811 0.20600702 ES(ph)SHNSSFELIGSTIPSYQPCNR ddPTM_HeLa_A485_30min_R1 1 ESSHNSSFELIGSTIPSYQPCNR 23 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 ES(0.269)S(0.269)HNS(0.231)S(0.231)FELIGSTIPSYQPCNR 83.905 0.0024388 135780000 76132 97612 85231 44372 141690 117150 118720 109830 91419 94101 TRUE FALSE FALSE 93067.30075 109026.8743 116761.4937 46795.93 127582.8461 123283.7929 93354.50215 82894.02029 109765.9548 70643.3525 1.317424746 1.543342302 1.652830585 0.662425102 1.806013469 1.745157732 1.321490258 1.173415719 1.55380444 1 16.10826619 -11.02292903 0.495953353 0.564031191 1.424956133 0.135490703 0.316049894 168.2815395 12.95107205 83.63439983 0.155259864 9.49E-12 11.02292903 0.860924942 ES(ph)SKVPR ddPTM_HeLa_A486_30min_R1 1 ESSKVPR 7 1 E5RJ29;Q9NYI0-2;Q9NYI0 E5RJ29 PSD3 PH and SEC7 domain-containing protein 3 1 0 ES(0.5)S(0.5)KVPR 42.864 0.035194 160510000 75663 121700 36334 109980 69828 93538 144480 126490 59850 275960 TRUE FALSE FALSE 70359.41442 112056.0488 50403.49786 256038.9981 61069.52112 81998.23258 108329.5758 97690.98826 65037.84619 206857.8198 0.340134178 0.541705645 0.243662521 1.237753537 0.295224619 0.396398998 0.523690987 0.472261519 0.314408449 1 17.65827997 -10.22102922 4.882982959 1.000076418 0.494306447 0.247200775 0.269162384 0.000227314 3.63E-05 0.254414552 0.061694948 6.01E-11 10.22102922 -0.505769971 ES(ph)SNPSDRWR ddPTM_HeLa_A485_30min_R1 2 ESSNPSDRWR 10 1 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ES(0.498)S(0.498)NPS(0.004)DRWR;ES(0.5)S(0.5)NPSDRWR ; 76.073 0.0018707 297290000 251377 310480 266421 243539 393410 286291 294374 315730 237845 270100 TRUE FALSE FALSE 307294.9464 346787.9352 364981.2146 256842.9189 354240.7191 301280.7541 231478.5901 238296.7225 285578.3099 202769.0408 1.51549243 1.710260767 1.799984914 1.26667719 1.747015805 1.485832121 1.141587439 1.175212555 1.408392074 1 17.62947787 -6.63422347 4.315805519 1.197077018 1.606388119 0.591108441 0.167512273 0.160226902 5.276259866 0.065473252 0.049661604 2.32E-07 6.63422347 0.409311101 ES(ph)SNPSDRWR ddPTM_HeLa_A486_30min_R1 1 ESSNPSDRWR 10 1 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ES(0.5)S(0.5)NPSDRWR 111.79 0.00014841 0 165440 128380 95805 67797 182700 107130 142410 136080 82018 121050 TRUE FALSE FALSE 153843.5103 118206.7012 132903.2617 157834.8423 159784.0624 93913.38982 106777.5117 105097.5546 89127.38628 90738.2921 1.695464029 1.302721249 1.464687715 1.739451323 1.760933104 1.034991817 1.176763517 1.158249204 0.982246681 1 16.46942388 -6.270976529 24.99200814 1.086985374 1.577590699 0.775717444 0.140137933 364.8862909 956178.3022 0.052884972 0.047242575 5.36E-07 6.270976529 0.490605324 ES(ph)SPEKEAEEGCPEK ddPTM_HeLa_A486_30min_R1 1 ESSPEKEAEEGCPEK 15 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.594)S(0.406)PEKEAEEGCPEK 129.15 7.53E-06 0 273560 262820 131200 158030 211190 327140 403190 314330 213550 548560 TRUE FALSE FALSE 254384.8567 241993.186 182004.1537 367901.8264 184700.5809 286780.7929 302307.5975 242763.9208 232060.6859 411197.0055 0.618644721 0.588509116 0.442620329 0.894709401 0.449177836 0.697429186 0.7351892 0.590383484 0.564354027 1 18.64947023 -10.35897201 3.22856094 1.003213169 0.621796189 0.447440068 0.126635443 66266135.65 91995904.12 2024587.362 0.031142786 4.38E-11 10.35897201 -0.38141698 ES(ph)SPEKEAEEGCPEKESEEGCPK ddPTM_HeLa_A486_30min_R1 1 ESSPEKEAEEGCPEKESEEGCPK 23 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.5)S(0.5)PEKEAEEGCPEKESEEGCPK 257.96 1.84E-61 945420000 347270 411770 91487 678300 312830 688150 1195100 955820 297530 1381800 TRUE FALSE FALSE 322928.1663 379139.8456 126913.2165 1579116.679 273591.9444 603253.0496 896073.3395 738200.6514 323320.14 1035788.286 0.311770437 0.366039905 0.122528144 1.524555453 0.264138867 0.582409608 0.865112448 0.712694536 0.312148867 1 19.98229772 ES(ph)SPFLSPLEASR ddPTM_HeLa_A485_30min_R1 1 ESSPFLSPLEASR 13 0 Q9UP95-4;Q9UP95-3;Q9UP95-5;Q9UP95-2;Q9UP95-6;Q9UP95 Q9UP95-4 SLC12A4 Solute carrier family 12 member 4 1 0 ES(0.5)S(0.5)PFLSPLEASR 107.99 0.00036908 97190000 65388 68813 52724 64722 65926 64694 79913 67961 55037 105960 TRUE FALSE FALSE 79933.33501 76860.08176 72228.80163 68257.59898 59362.17596 68081.2778 62838.93472 51293.45819 66082.42107 79546.12205 1.004867779 0.96623292 0.908011601 0.858088329 0.746261093 0.855871739 0.78996855 0.644826635 0.830743465 1 16.27950398 -5.078163531 1.340889103 0.793732284 1.003080691 0.3809568 0.085898197 0.45696494 1.514762077 0.027353094 0.086695604 8.35E-06 5.078163531 0.209348407 ES(ph)SPIPS(ph)PTSDRK ddPTM_HeLa_A485_30min_R1 2 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.5)S(0.5)PIPS(0.952)PT(0.027)S(0.022)DRK;ES(0.5)S(0.5)PIPS(0.909)PT(0.049)S(0.042)DRK ; 74.89 0.0036548 2444320000 2097790 1722280 1046380 2455960 1704760 1772130 2559190 2288070 1382490 2946000 TRUE FALSE FALSE 2564436.148 1923685.664 1433479.506 2590122.876 1535028.109 1864915.987 2012398.15 1726917.245 1659943.062 2211616.417 1.159530255 0.869809814 0.64815919 1.171144714 0.694075201 0.843236635 0.909921872 0.780839404 0.750556493 1 21.07666976 -4.269545101 5.331957658 0.844363806 1.170761216 0.289015592 0.144697789 0.173741587 17.76258414 0.034197587 0.205744254 5.38E-05 4.269545101 0.32639741 ES(ph)SPIPS(ph)PTSDRK ddPTM_HeLa_A486_30min_R1 1 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.5)S(0.5)PIPS(0.829)PT(0.094)S(0.077)DRK 92.575 0.00062763 2093600000 1736900 1496900 617060 633610 1121100 1576000 1879000 1679900 1069700 2320500 TRUE FALSE FALSE 1615152.279 1378280.192 856002.1574 1475076.101 980481.1842 1381569.144 1408854.326 1297423.442 1162422.457 1739431.696 0.928551712 0.792373851 0.492115994 0.848021859 0.563679037 0.794264671 0.809950933 0.745889272 0.66827715 1 20.7301846 -10.6800966 6.983500108 1.001548427 0.734578502 0.283637899 0.124738624 0.002955704 0.000135396 0.118708234 0.028641743 2.09E-11 10.6800966 -0.266969925 ES(ph)SPKKEETVAR ddPTM_HeLa_A485_30min_R1 1 ESSPKKEETVAR 12 2 Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 ES(0.852)S(0.148)PKKEETVAR 52.527 0.033015 134210000 33370 31781 22281 64438 49253 42742 64342 66882 31831 96012 TRUE FALSE FALSE 40793.04137 35497.51149 30523.66909 67958.08477 44349.19838 44979.90503 50594.80607 50479.08463 38219.18973 72077.97537 0.565957093 0.492487633 0.423481222 0.9428412 0.61529473 0.624045068 0.701945439 0.700339936 0.530247826 1 16.13727087 -14 0.174227028 2.419977751 0.546445082 0.408448486 0.13584506 141.5824787 1.347138167 70.0851063 0.477616862 1.00E-14 14 -1.87353267 ES(ph)SPKKEETVAR ddPTM_HeLa_A486_30min_R1 2 ESSPKKEETVAR 12 2 Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 ES(0.917)S(0.083)PKKEETVAR;ES(0.834)S(0.166)PKKEETVAR ; 61.649 0.018787 329260000 223280 198475 101376 256563 219176 337910 495570 422930 186593 530380 TRUE FALSE FALSE 207629.225 182747.1182 140631.5021 597291.63 191684.9023 296222.0998 371573.1444 326638.0715 202767.0315 397569.3958 0.522246499 0.45966093 0.353728188 1.50235817 0.482141997 0.745082753 0.934612041 0.821587564 0.510016701 1 18.60084718 ES(ph)SPKKEETVASK ddPTM_HeLa_A485_30min_R1 1 ESSPKKEETVASK 13 2 J3QQY0 J3QQY0 MSL1 1 0 ES(0.5)S(0.5)PKKEETVASK 61.167 0.012284 242780000 64667 29601 24673 223980 72292 52547 116520 80010 50363 332860 TRUE FALSE FALSE 79051.95105 33062.57946 33800.56943 236215.4603 65094.35465 55298.27967 91624.55012 60387.42205 60470.39214 249884.1278 0.316354431 0.132311643 0.135264971 0.945299977 0.260498157 0.221295687 0.366668147 0.241661696 0.24199373 1 17.93089974 -10.0843962 4.000355771 1.000118851 0.320207224 0.461727366 0.220920396 478194106.5 923259502.6 938556.3294 0.055413368 8.23E-11 10.0843962 -0.679911626 ES(ph)SPLYSPTFSDSTSAVK ddPTM_HeLa_A486_30min_R1 1 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.461)S(0.461)PLY(0.074)S(0.003)PTFSDSTSAVK 77.468 0.0029378 323730000 183690 208110 131490 95724 196820 235120 275550 269850 207670 289890 TRUE FALSE FALSE 170814.2796 191618.6057 182406.4494 222850.3096 172133.0003 206113.2849 206604.4755 208411.0458 225671.0028 217299.6571 0.786077078 0.88181734 0.839423549 1.02554377 0.792145752 0.948520985 0.950781415 0.959095143 1.038524431 1 17.72932637 -1 0.176925839 1.031682479 0.076730281 0.489388775 0.062728294 50.35734331 0.5599715 0.145100699 12.87200424 0.1 1 -0.954952198 ES(ph)SPSHGLLK ddPTM_HeLa_A485_30min_R1 4 ESSPSHGLLK 10 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 ES(0.488)S(0.488)PS(0.024)HGLLK;ES(0.604)S(0.365)PS(0.031)HGLLK;ES(0.399)S(0.399)PS(0.201)HGLLK;ES(0.497)S(0.497)PS(0.005)HGLLK ;;; 160.67 4.37E-07 1954490000 2496760 2547510 2088270 2576940 3332270 2631440 3477360 3510100 2473180 3810430 TRUE FALSE FALSE 3052155.648 2845419.134 2860807.973 2717711.707 3000497.498 2769218.129 2734393.629 2649242.471 2969524.541 2860559.927 1.066978398 0.994707053 1.000086713 0.950062847 1.048919643 0.96806856 0.955894545 0.926127241 1.038092058 1 21.44786614 ES(ph)SPSHGLLK ddPTM_HeLa_A486_30min_R1 4 ESSPSHGLLK 10 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 ES(0.486)S(0.486)PS(0.029)HGLLK;ES(0.499)S(0.499)PS(0.001)HGLLK;ES(0.499)S(0.499)PS(0.001)HGLLK;ES(0.644)S(0.356)PSHGLLK ;;; 198.81 7.62E-14 2389310000 2015810 2292990 1387910 380689 2241800 2221540 2543650 2456850 1970150 2105390 TRUE FALSE FALSE 1874512.129 2111285.121 1925345.922 886263.231 1960612.54 1947468.982 1907201.866 1897478.888 2140924.188 1578186.64 1.187763273 1.337791784 1.219973527 0.561570608 1.242319818 1.233991552 1.208476753 1.202315898 1.356572242 1 20.5898364 ES(ph)SRDT(ph)SPVR ddPTM_HeLa_A485_30min_R1 1 ESSRDTSPVR 10 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 ES(0.778)S(0.218)RDT(0.573)S(0.432)PVR 77.776 0.007851 681470000 366060 453240 310890 392340 352280 379670 421850 402790 311730 434240 TRUE FALSE FALSE 447488.7841 506242.4753 425901.1482 413772.5407 317205.7663 399548.9341 331718.3013 304005.1209 374291.3516 325991.9596 1.372698838 1.55292933 1.306477463 1.269272228 0.973047822 1.225640456 1.017565899 0.932554046 1.148161299 1 18.31447686 -5.377121473 1.541607917 1.049158676 1.459993484 0.73233321 0.098993378 0.196047784 0.917858293 0.031945205 0.063312422 4.20E-06 5.377121473 0.410834807 ES(ph)TGNMVTGQTVCK ddPTM_HeLa_A485_30min_R1 2 ESTGNMVTGQTVCK 14 0 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 ES(0.983)T(0.017)GNMVTGQTVCK;ES(0.99)T(0.01)GNMVTGQTVCK ; 366.88 2.86E-109 525200000 721810 591510 507260 777760 857150 651340 831840 886510 573240 996650 TRUE FALSE FALSE 882374.1443 660681.949 694916.5828 820247.0594 771809.1364 685443.1552 654110.5885 669092.0325 688284.0099 748203.497 1.179323737 0.883024407 0.928780186 1.096288727 1.031549758 0.91611862 0.874241555 0.894264776 0.919915521 1 19.51307118 -6.2698258 21.92396141 0.911382941 1.014721875 0.272382567 0.082692823 165.0885855 431574.3269 0.0289798 0.026059762 5.37E-07 6.2698258 0.103338934 ES(ph)TGNMVTGQTVCK ddPTM_HeLa_A486_30min_R1 2 ESTGNMVTGQTVCK 14 0 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 ES(0.985)T(0.015)GNMVTGQTVCK;ES(0.998)T(0.002)GNMVTGQTVCK ; 328.49 3.79E-81 597650000 925220 1020580 569010 417200 1017770 1173920 1260170 1163060 816270 1211020 TRUE FALSE FALSE 860366.8558 939705.5239 789345.9106 971262.6841 890111.7963 1029093.686 944862.1373 898256.6274 887024.9408 907772.7096 0.947777838 1.035177103 0.869541354 1.069940387 0.980544785 1.133646865 1.040857615 0.989517109 0.977144313 1 19.79197159 -4.246497788 22.45059322 1.011661145 0.947777645 0.07693175 0.065319551 1834.456925 2756178.181 0.016434327 0.316872529 5.67E-05 4.246497788 -0.0638835 ES(ph)Y(ph)S(ph)GKFT(ph)S(ph)R ddPTM_HeLa_A486_30min_R1 1 ESYSGKFTSR 10 1 Q53TS8-4;Q53TS8 Q53TS8-4 ALS2CR11 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein 5 0 ES(1)Y(1)S(1)GKFT(1)S(1)R 56.205 0.011518 201050000 16489 16386 18065 3950.6 25799 14130 16102 12053 16547 10221 TRUE FALSE FALSE 15333.20625 15087.51368 25060.2518 9197.196452 22563.04885 12386.78426 12073.10929 9308.795015 17981.30728 7661.595072 2.001307313 1.969239243 3.270892231 1.200428418 2.944954496 1.616737004 1.575795794 1.214994388 2.346940436 1 12.90342906 -6.479556502 24.07129383 1.558622552 2.25813619 0.257028265 0.617854506 435.7362212 242109.7085 0.205442896 0.181167282 3.31E-07 6.479556502 0.699513638 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(ph)PAIR ddPTM_HeLa_A485_30min_R1 2 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(1)PAIR;ESAAPAAAPTAEAPPPSVVTRPEPQALPS(1)PAIR ; 303.39 1.67E-93 3880400000 261169 309029 328598 236517 430784 322970 381079 388259 293613 376435 TRUE FALSE FALSE 319265.143 345167.2534 450160.0743 249437.3248 387893.6324 339880.2098 299658.3585 293037.8715 352538.4359 282596.6823 1.129755454 1.221412971 1.592941823 0.882661901 1.372605047 1.202704176 1.060374652 1.036947317 1.247496726 1 18.108385 -6.645825521 5.135563547 1.090089365 1.242886214 0.142268428 0.178682423 0.433474555 17.72443211 0.06826619 0.052106071 2.26E-07 6.645825521 0.152796849 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(ph)PAIR ddPTM_HeLa_A486_30min_R1 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 ESAAPAAAPTAEAPPPS(0.001)VVT(0.012)RPEPQALPS(0.986)PAIR 60.649 0.0055411 1288600000 120760 138050 104600 34043 156400 131650 149540 129450 82804 117880 TRUE FALSE FALSE 112295.3476 127110.4152 145103.9213 79253.82444 136782.8536 115408.3615 112123.5103 99977.06087 89981.51739 88362.08073 1.270854496 1.438517678 1.642151476 0.896921211 1.547981357 1.306084698 1.268909802 1.131447563 1.018327281 1 16.43113977 -7.341395064 1.389751089 0.99395845 1.358663519 0.356307152 0.18590271 0.495979334 1.684827627 0.156481333 0.057068536 4.56E-08 7.341395064 0.364705068 ESAS(ph)PTIPNLDLLEAHTK ddPTM_HeLa_A485_30min_R1 4 ESASPTIPNLDLLEAHTK 18 0 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 ES(0.02)AS(0.974)PT(0.005)IPNLDLLEAHTK;ES(0.03)AS(0.939)PT(0.03)IPNLDLLEAHTK;ES(0.341)AS(0.549)PT(0.109)IPNLDLLEAHTK;ESAS(0.985)PT(0.015)IPNLDLLEAHTK ;;; 240.49 1.84E-45 1429410000 1233550 1270780 1044800 1534040 1723070 1339180 1858370 2296110 1289280 2428430 TRUE FALSE FALSE 1507948.942 1419386.667 1431314.998 1617840.721 1551515.101 1409297.394 1461314.068 1732985.422 1548026.67 1823067.093 0.827149449 0.778570724 0.785113726 0.887427965 0.851046627 0.773036494 0.801569001 0.950587847 0.849133132 1 20.79793623 -8.107525806 0.620781106 1.000900169 0.811475313 0.571033948 0.04728519 0.706952156 0.621038768 0.051631837 0.021285485 7.81E-09 8.107525806 -0.189424856 ESAS(ph)PTIPNLDLLEAHTK ddPTM_HeLa_A486_30min_R1 3 ESASPTIPNLDLLEAHTK 18 0 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 ES(0.001)AS(0.999)PTIPNLDLLEAHTK;ES(0.081)AS(0.914)PT(0.004)IPNLDLLEAHTK;ES(0.187)AS(0.787)PT(0.027)IPNLDLLEAHTK ;; 309.35 3.21E-89 902960000 1506600 1555260 963390 562893 1492950 1588540 1805540 1749290 1311190 1761930 TRUE FALSE FALSE 1400995.12 1432015.533 1336440.408 1310443.351 1305690.29 1392562.086 1353774.795 1351014.854 1424845.005 1320731.26 1.060772288 1.084259589 1.011894281 0.992210445 0.988611635 1.054387163 1.025019121 1.022929414 1.078830379 1 20.33290551 -4.76283062 24.99999743 1.021600179 1.072515948 0.365818689 0.026743859 37.20947121 668701.0186 0.007208304 0.016465347 1.73E-05 4.76283062 0.050915769 ESAWS(ph)PPPIEIR ddPTM_HeLa_A485_30min_R1 2 ESAWSPPPIEIR 12 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESAWS(1)PPPIEIR;ESAWS(1)PPPIEIR ; 156.6 4.43E-08 142640000 535580 597960 528380 558890 815400 533440 598560 614710 550510 785310 TRUE FALSE FALSE 654717.9233 667886.2204 723849.7497 589420.7455 734215.913 561370.0935 470672.7662 463951.4087 660992.3074 589546.6696 1.11054469 1.132881 1.227807377 0.999786405 1.245390655 0.952206369 0.798363879 0.786962988 1.121187417 1 19.1692465 -6.406818306 5.858328864 0.904553431 1.138536931 0.476580973 0.109942451 0.190844504 8.507696717 0.038324846 0.033573487 3.92E-07 6.406818306 0.2339835 ESAWS(ph)PPPIEIR ddPTM_HeLa_A486_30min_R1 1 ESAWSPPPIEIR 12 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESAWS(1)PPPIEIR 106.55 0.00053322 59052000 153440 163900 128650 55368 182220 152680 179030 153430 135330 154340 TRUE FALSE FALSE 142684.6484 150911.9671 178466.7254 128899.5021 159364.2685 133843.8939 134234.8004 118497.3384 147060.5134 115692.2594 1.23331197 1.304425792 1.542598669 1.114158396 1.377484278 1.156895843 1.16027469 1.024246038 1.271135287 1 16.81993282 -6.39196885 4.381587112 1.120607837 1.315110452 0.380363673 0.12301989 0.257913376 8.007464891 0.043544191 0.03790346 4.06E-07 6.39196885 0.194502615 ESCSS(ph)PSTVGSSLTTR ddPTM_HeLa_A485_30min_R1 1 ESCSSPSTVGSSLTTR 16 0 Q7Z589;Q7Z589-5;Q7Z589-7;E9PMC9;Q7Z589-6;Q7Z589-4;H0YEP9 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 ESCSS(0.488)PS(0.154)T(0.358)VGSSLTTR 191.78 3.95E-18 444530000 136220 182250 185140 158200 220740 172340 185310 209220 160430 204580 TRUE FALSE FALSE 166521.669 203562.5521 253630.9903 166842.0654 198762.3505 181363.4559 145717.0047 157908.467 192626.8294 153581.971 1.084252715 1.325432606 1.651437266 1.086338874 1.294177625 1.180890275 0.948789781 1.028170598 1.254228137 1 17.22864934 -6.273062765 1.63643416 1.06124006 1.316424828 0.287077895 0.166426927 0.489507044 2.600493586 0.074061111 0.066783439 5.33E-07 6.273062765 0.255184768 ESCSSPST(ph)VGSSLTTR ddPTM_HeLa_A485_30min_R1 1 ESCSSPSTVGSSLTTR 16 0 Q7Z589;Q7Z589-5;Q7Z589-7;E9PMC9;Q7Z589-6;Q7Z589-4;H0YEP9 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 ESCS(0.008)S(0.248)PS(0.248)T(0.493)VGS(0.001)SLTTR 122.63 0.0001458 751460000 252400 280900 326550 297030 400750 290900 331620 320160 285350 356030 TRUE FALSE FALSE 308545.5092 313748.8115 447354.4339 313255.9968 360849.9229 306131.0742 260766.6779 241640.258 342617.1276 267278.2732 1.154398019 1.173865753 1.673740362 1.172021927 1.350090744 1.145364606 0.975637394 0.904077444 1.281874218 1 18.02798304 -6.460818238 3.639066831 1.033518023 1.309920492 0.357823872 0.16718389 0.265560552 6.948646649 0.063937648 0.053594063 3.46E-07 6.460818238 0.27640247 ESDKEDGRES(ph)PSYDTPSQR ddPTM_HeLa_A485_30min_R1 4 ESDKEDGRESPSYDTPSQR 19 2 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-14;E9PFN4;Q9Y6M7-11;A0A0A0MST8;C9JRP1;Q9Y6M7-12;Q9Y6M7-10 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 ESDKEDGRES(0.959)PS(0.041)YDTPSQR;ESDKEDGRES(1)PSYDTPSQR;ESDKEDGRES(0.985)PS(0.015)YDTPSQR;ESDKEDGRES(0.998)PS(0.002)YDTPSQR ;;; 177.22 8.30E-14 1720860000 1009360 726935 397354 1375220 585676 894068 1208130 1068690 634858 2552420 TRUE FALSE FALSE 1233888.65 811943.7248 544351.7799 1450344.786 527364.041 940880.018 950003.156 806592.1019 762268.1773 1916148.668 0.643942023 0.423737332 0.284086402 0.756906189 0.275220837 0.491026627 0.495787812 0.420944426 0.397812649 1 20.86977807 -10.33007532 3.628525156 1.001992433 0.462238309 0.567543094 0.139946972 197454878.3 303859536.9 4223790.791 0.034011245 4.68E-11 10.33007532 -0.539754123 ESDKEDGRES(ph)PSYDTPSQR ddPTM_HeLa_A486_30min_R1 1 ESDKEDGRESPSYDTPSQR 19 2 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-14;E9PFN4;Q9Y6M7-11;A0A0A0MST8;C9JRP1;Q9Y6M7-12;Q9Y6M7-10 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 ESDKEDGRES(1)PSYDTPSQR 138.24 5.03E-07 463540000 478510 467450 289250 211900 468870 587600 533850 512980 519060 981040 TRUE FALSE FALSE 444968.92 430407.5596 401255.3464 493313.9088 410059.9526 515107.8863 400275.0835 396185.6523 564052.5387 735381.1985 0.605086071 0.585284966 0.545642651 0.67082747 0.557615497 0.700463769 0.544309651 0.538748683 0.767020614 1 19.48813277 -8.030979861 3.760428937 0.999464093 0.595788929 0.855243022 0.052213056 0.072838204 2.873605395 0.049242325 0.012980905 9.31E-09 8.030979861 -0.403675164 ESDQTLAALLS(ph)PK ddPTM_HeLa_A485_30min_R1 7 ESDQTLAALLSPK 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK ;;;;;; 300.51 7.66E-58 5829521000 2780906 2217689 1643614 5258809 3088404 2290647 3963922 2978504 2135739 6483540 TRUE FALSE FALSE 3399508.946 2477028.437 2251655.215 5546084.42 2780911.654 2410581.735 3116997.682 2248021.224 2564362.227 4867312.799 0.698436506 0.50891088 0.462607461 1.139455106 0.571344347 0.49525926 0.640393953 0.461860849 0.526853797 1 22.21469406 -10.14446159 4.993616427 1.00002075 0.61162348 0.27130828 0.190919853 4.51E-05 7.73E-06 0.189214198 0.045888735 7.17E-11 10.14446159 -0.38839727 ESDQTLAALLS(ph)PK ddPTM_HeLa_A486_30min_R1 9 ESDQTLAALLSPK 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK ;;;;;;;; 247.99 2.25E-35 7776023000 1711252 1681744 815974 1232854 1436478 1962598 2526311 2177447 1364158 3065428 TRUE FALSE FALSE 1591302.072 1548476.481 1131940.985 2870146.417 1256301.535 1720472.613 1894201.267 1681689.851 1482404.314 2297824.876 0.692525391 0.673887944 0.492614123 1.249071 0.546735109 0.748739658 0.824345357 0.731861627 0.645133722 1 21.13183742 -11.43277459 2.184089301 3.312882113 0.737705788 0.14326203 0.195033334 5861023.88 584350.4727 67044168.34 0.048219343 3.69E-12 11.43277459 -2.575176325 ESDSAEGDEAES(ph)PEQQVR ddPTM_HeLa_A486_30min_R1 2 ESDSAEGDEAESPEQQVR 18 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 ESDSAEGDEAES(1)PEQQVR;ESDSAEGDEAES(1)PEQQVR ; 410.7 3.74E-163 826270000 259481 291680 220340 83464 297190 263950 282880 278990 245910 304560 TRUE FALSE FALSE 241292.7219 268566.2145 305661.5489 194308.41 259913.659 231386.5326 212100.432 215470.0673 267225.6768 228296.1936 1.056928361 1.176393746 1.338881494 0.851124177 1.138493178 1.013536533 0.929058118 0.943818046 1.170521823 1 17.80054728 -5.260267475 24.99997122 1.006856732 1.189300447 0.375089095 0.10888005 113.29368 2416839.353 0.029698497 0.047992093 5.49E-06 5.260267475 0.182443715 ESDTKNEVNGTSEDIKS(ph)EGDT(ph)QSN ddPTM_HeLa_A486_30min_R1 1 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 2 0 ESDTKNEVNGTSEDIKS(1)EGDT(0.618)QS(0.382)N 217.57 4.87E-38 584260000 816610 705290 254730 800350 677410 1035900 1716900 1473300 549600 1951000 TRUE FALSE FALSE 759369.856 649400.2518 353368.2779 1863255.247 592442.9212 908101.1903 1287313.46 1137861.752 597239.7705 1462456.901 0.519242554 0.444047446 0.241626456 1.274058228 0.405101115 0.62094219 0.880240272 0.778048058 0.408381109 1 20.47996268 -5.395552304 0.096191668 1.186940685 4.34E-31 0.151001026 0.280436836 83.84812882 2.034298645 7.597126148 18.09726836 4.02E-06 5.395552304 -1.186940685 ESDTKNEVNGTSEDIKS(ph)EGDTQSN ddPTM_HeLa_A485_30min_R1 1 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 ESDTKNEVNGTSEDIKS(0.999)EGDTQSN 149.07 1.19E-17 0 131480 110550 63283 319050 190790 139900 266820 245140 110890 465410 TRUE FALSE FALSE 160727.2724 123477.8608 86694.01513 336478.8936 171794.2777 147224.9477 209811.7273 185019.0306 133144.6059 349391.8522 0.460020093 0.353407957 0.248128325 0.963041615 0.491695146 0.421374874 0.600505495 0.529545922 0.381075303 1 18.41448644 -11.21693655 2.273359126 2.560859736 0.498649512 0.409100151 0.182258309 15487598.21 2956355.176 124241665.2 0.049017252 6.07E-12 11.21693655 -2.062210224 ESDTKNEVNGTSEDIKS(ph)EGDTQSN ddPTM_HeLa_A486_30min_R1 1 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 ESDTKNEVNGTSEDIKS(1)EGDTQSN 201.08 2.81E-29 0 279320 225130 88499 208500 206820 312600 470200 424210 174380 576620 TRUE FALSE FALSE 259741.1104 207289.8789 122768.1829 485398.537 180878.7071 274034.5903 352550.9867 327626.6434 189495.3988 432230.5988 0.600931797 0.479581685 0.284033993 1.12300827 0.41847733 0.634000904 0.815654856 0.757990398 0.438412735 1 18.72144168 -14 0.111444473 2.110984761 0.426419747 0.196820962 0.228325614 278.2490825 2.051017829 71.87440001 2.74455815 1.00E-14 14 -1.684565014 ESDTKNEVNGTSEDIKSEGDTQS(ph)N ddPTM_HeLa_A485_30min_R1 2 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 ESDTKNEVNGTSEDIKSEGDT(0.142)QS(0.858)N;ESDTKNEVNGTSEDIKS(0.013)EGDT(0.204)QS(0.783)N ; 161.04 4.83E-14 1066400000 529060 393470 289458 1067820 701350 572360 1123760 1019140 469330 1615230 TRUE FALSE FALSE 646747.5718 439482.8938 396540.5596 1126152.303 631521.1314 602327.8846 883659.4957 769194.3171 563520.2261 1212582.887 0.533363598 0.362435342 0.327021405 0.928721916 0.520806568 0.496731309 0.72874152 0.634343702 0.46472718 1 20.20965194 -14 0.152069058 2.525165621 0.430403463 0.393570254 0.166372794 145.6952592 1.305605805 67.63608366 0.840503588 1.00E-14 14 -2.094762158 ESDTKNEVNGTSEDIKSEGDTQS(ph)N ddPTM_HeLa_A486_30min_R1 3 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 ESDTKNEVNGTSEDIKSEGDT(0.01)QS(0.99)N;ESDTKNEVNGTSEDIKS(0.001)EGDT(0.15)QS(0.849)N;ESDTKNEVNGTSEDIKSEGDT(0.008)QS(0.992)N ;; 303.74 7.05E-90 2817780000 1245380 1066960 492019 1043910 1169550 1617060 2416960 2249970 854520 2313290 TRUE FALSE FALSE 1158085.293 982410.2038 682541.9335 2430275.236 1022854.133 1417563.578 1812211.044 1737700.947 928590.4816 1734027.127 0.66785881 0.566548348 0.393616641 1.401520887 0.589872048 0.817497925 1.045088059 1.002118664 0.535510931 1 20.72569504 -5.18377825 25 0.901253176 0.545061713 0.336127772 0.238138769 138.0266646 44431.23759 0.062578155 0.108388537 6.55E-06 5.18377825 -0.356191464 ESEDDPES(ph)EPDDHEK ddPTM_HeLa_A485_30min_R1 1 ESEDDPESEPDDHEK 15 0 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 1 0 ESEDDPES(1)EPDDHEK 211.29 5.56E-26 1204600000 1338600 1114400 770250 2022600 1489100 1420500 2124600 2026600 1082400 2741700 TRUE FALSE FALSE 1636366.952 1244719.386 1055197.528 2133089.517 1340839.975 1494875.183 1670661.854 1529573.172 1299627.752 2058244.647 0.795030345 0.604748025 0.512668661 1.036363447 0.6514483 0.726286443 0.811692554 0.743144492 0.631425304 1 20.97298304 -11.11503299 2.409773996 1.522166815 0.724258078 0.272605686 0.13542378 12559983.93 3773544.971 35876431.54 0.034114843 7.67E-12 11.11503299 -0.797908737 ESEDKPEIEDVGS(ph)DEEEEK ddPTM_HeLa_A485_30min_R1 4 ESEDKPEIEDVGSDEEEEK 19 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK ;;; 318.52 4.29E-90 11469430000 7203950 4129540 1868374 11708090 2825630 4325200 7429090 4631800 2552790 12533390 TRUE FALSE FALSE 8806443.824 4612453.781 2559563.292 12347673.31 2544300.356 4551660.784 5841804.231 3495843.788 3065111.537 9409046.533 0.935954966 0.490214791 0.272032164 1.312319295 0.270410009 0.483753669 0.620871011 0.371540706 0.325762183 1 23.1656171 -10.11804194 4.803769848 1.000018802 0.56087406 0.148239582 0.312860874 8.33E-05 1.53E-05 0.295700028 0.071713639 7.62E-11 10.11804194 -0.439144742 ESEDKPEIEDVGS(ph)DEEEEK ddPTM_HeLa_A486_30min_R1 6 ESEDKPEIEDVGSDEEEEK 19 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK ;;;;; 333.78 2.77E-102 20880490000 13316270 9830910 2063815 7058933 4067508 12038860 14832210 11061040 7176336 30269440 TRUE FALSE FALSE 12382868.24 9051872.888 2862979.439 16433552.76 3557323.219 10553627.86 11121034.18 8542682.653 7798386.583 22689775.2 0.545746625 0.398940616 0.126179277 0.72427129 0.156780893 0.465127035 0.490134172 0.376499219 0.343696071 1 24.43553898 -10.53746602 3.030835572 1.023707421 0.400589943 0.536903615 0.166309154 73062636.1 82778054.11 14208268.42 0.039553738 2.90E-11 10.53746602 -0.623117478 ESEDKPEIEDVGS(ph)DEEEEKK ddPTM_HeLa_A485_30min_R1 7 ESEDKPEIEDVGSDEEEEKK 20 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK ;;;;;; 267.71 2.13E-59 21184440000 4952134 2822480 1295168 11967300 2513598 3044763 5690400 3984334 1813294 11896900 TRUE FALSE FALSE 6053719.124 3152544.484 1774304.54 12621043.3 2263335.357 3204182.083 4474599.554 3007169.839 2177205.473 8931221.776 0.67781534 0.352980204 0.198663137 1.413137375 0.253418336 0.358761899 0.501006432 0.336703075 0.243774651 1 23.09042612 -9.875264093 6.602753744 1.000000019 0.4830427 0.173902439 0.33881569 9.61E-08 1.62E-08 0.326702287 0.07923694 1.33E-10 9.875264093 -0.516957319 ESEDKPEIEDVGS(ph)DEEEEKK ddPTM_HeLa_A486_30min_R1 7 ESEDKPEIEDVGSDEEEEKK 20 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK ;;;;;; 252.8 7.50E-59 70442420000 10958170 7374520 1174484 8849990 2789230 11659110 16703900 11439400 4825670 35113400 TRUE FALSE FALSE 10190058.87 6790136.178 1629275.659 20603223.97 2439378.765 10220727.55 12524407.54 8834898.34 5243962.961 26320776.09 0.387148876 0.25797629 0.061900745 0.782774182 0.092678831 0.388314065 0.47583732 0.335662532 0.19923284 1 24.64969869 -10.82035621 2.697362207 1.218374323 0.333521205 0.512045806 0.195828499 51591075.3 36744640.3 73292875.04 0.046657724 1.51E-11 10.82035621 -0.884853119 ESEDKPEIEDVGS(ph)DEEEEKKDGDK ddPTM_HeLa_A485_30min_R1 8 ESEDKPEIEDVGSDEEEEKKDGDK 24 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK ;;;;;;; 270.14 1.73E-62 1.03E+11 20097090 7436490 3436944 79602300 11771540 10195260 27566140 12423480 5049105 86190900 TRUE FALSE FALSE 24567618.34 8306122.817 4708412.609 83950772.09 10599524.15 10729068.05 21676408.99 9376602.051 6062414.06 64705094.86 0.379685995 0.128368915 0.072767262 1.297436813 0.163812821 0.165814888 0.335003125 0.144912886 0.093692994 1 25.94737598 -10.56011437 3.42791228 1.021311029 0.313311877 0.265839597 0.344403766 871777446.7 1268716929 174109602.2 0.086608844 2.75E-11 10.56011437 -0.707999152 ESEDKPEIEDVGS(ph)DEEEEKKDGDK ddPTM_HeLa_A486_30min_R1 10 ESEDKPEIEDVGSDEEEEKKDGDK 24 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK ;;;;;;;;; 248.82 2.07E-49 1.06E+11 8948746 7151829 1683867 17535940 3341894 14481770 21786140 15878830 4835933 46457850 TRUE FALSE FALSE 8321485.117 6585092.024 2335905.398 40824554.54 2922722.493 12695156.46 16335017.34 12263567.04 5255115.566 34824501.97 0.238954892 0.189093645 0.067076491 1.172293995 0.083927187 0.364546677 0.46906679 0.352153408 0.15090282 1 25.05359939 -11.07314289 3.315792794 2.132967393 0.351829586 0.296565832 0.3032358 442992246.4 705489566 3697300346 0.072292529 8.45E-12 11.07314289 -1.781137808 ESEDSETQPFDTHLEAYGPCLS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 ESEDSETQPFDTHLEAYGPCLSPPR 25 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR ;;; 236.6 4.29E-49 2405470000 421759 500749 548339 494339 746040 443496 627681 643696 554641 733470 TRUE FALSE FALSE 515577.8345 559307.2396 751192.4144 521343.4878 671761.6381 466716.7648 493571.8267 485828.5467 665952.3612 550629.4275 0.936342681 1.015759804 1.364243131 0.946813704 1.219988625 0.847605924 0.896377495 0.882314897 1.209438377 1 19.07072219 -6.264732902 24.99930143 0.955368909 1.098681136 0.152757593 0.151163852 538.6288215 4088416.207 0.051884448 0.047633243 5.44E-07 6.264732902 0.143312227 ESEDSETQPFDTHLEAYGPCLS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 ESEDSETQPFDTHLEAYGPCLSPPR 25 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR ;;; 276.29 2.44E-75 2542670000 703203 832665 686528 283128 901007 811940 939211 904496 748099 791906 TRUE FALSE FALSE 653912.101 766681.5929 952370.0275 659136.2925 787994.3005 711771.098 704210.4738 698562.0058 812944.8237 593607.5832 1.101589871 1.291563003 1.604376451 1.11039062 1.327466702 1.199059982 1.186323244 1.176807753 1.369498717 1 19.17915 -6.032376368 1.417558379 1.196576888 1.308427235 0.084067675 0.154865903 1.127362307 4.641366301 0.065111997 0.07107433 9.28E-07 6.032376368 0.111850347 ESEEGNPVRGS(ph)EEDS(ph)PKKESK ddPTM_HeLa_A485_30min_R1 1 ESEEGNPVRGSEEDSPKKESK 21 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 2 0 ESEEGNPVRGS(1)EEDS(0.999)PKKES(0.001)K 104.3 7.75E-05 447840000 83569 50911 26316 262490 93526 96548 186270 131240 57058 372210 TRUE FALSE FALSE 102158.6357 56864.59858 36051.3835 276829.164 84214.22305 101603.104 146471.8928 99053.18422 68509.01723 279424.897 0.365603197 0.203505841 0.12901994 0.990710445 0.301384107 0.363615072 0.524190558 0.354489472 0.245178644 1 18.09210105 -11.09167441 2.516683776 2.035753677 0.391176683 0.397529852 0.226543079 22430571.71 6848781.161 133149444.3 0.058207978 8.10E-12 11.09167441 -1.644576993 ESEEGNPVRGS(ph)EEDS(ph)PKKESK ddPTM_HeLa_A486_30min_R1 3 ESEEGNPVRGSEEDSPKKESK 21 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 2 0 ESEEGNPVRGS(1)EEDS(1)PKKESK;ESEEGNPVRGS(1)EEDS(1)PKKESK;ES(0.001)EEGNPVRGS(0.999)EEDS(0.991)PKKES(0.009)K ;; 111.15 4.67E-05 1496200000 478720 374260 95320 732230 291410 649280 1112960 911170 287541 1623360 TRUE FALSE FALSE 445164.2001 344602.2746 132230.4568 1704668.445 254858.6405 569178.435 834485.6363 703716.4817 312465.2854 1216860.09 0.365830225 0.283189725 0.108665292 1.400874644 0.209439559 0.467743531 0.685769583 0.578305171 0.25677996 1 20.21473187 -11.59518833 2.089637743 9.867203294 0.494228848 0.164321003 0.348372614 16942326.51 670414.8843 714946140.1 0.086049013 2.54E-12 11.59518833 -9.372974446 ESEEGNPVRGSEEDS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ESEEGNPVRGSEEDSPK 17 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ESEEGNPVRGSEEDS(1)PK 140.12 7.81E-07 612980000 348560 288800 129330 201930 161510 250830 376210 307100 185880 754490 TRUE FALSE FALSE 324127.744 265914.4362 179410.0396 470103.245 141251.9098 219885.1449 282078.2789 237180.0339 201992.2281 565560.7931 0.573108582 0.470178342 0.31722503 0.831216115 0.249755484 0.388791351 0.498758546 0.419371422 0.357153874 1 19.10932258 -10.21270643 3.415118728 1.001082879 0.455646251 0.532204483 0.152956729 74295325.14 113944084.9 881461.5908 0.037006308 6.13E-11 10.21270643 -0.545436628 ESEEGNPVRGSEEDS(ph)PKK ddPTM_HeLa_A485_30min_R1 2 ESEEGNPVRGSEEDSPKK 18 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ESEEGNPVRGSEEDS(1)PKK;ESEEGNPVRGSEEDS(1)PKK ; 91.729 0.00030986 2133720000 727640 515411 263240 1506970 673600 697110 1310570 951470 460738 1851440 TRUE FALSE FALSE 889501.0077 575683.833 360623.4303 1589291.955 606534.0188 733609.6017 1030556.013 718120.4907 553203.8905 1389910.081 0.639970182 0.414187825 0.259458101 1.143449477 0.436383639 0.527810836 0.741455168 0.51666687 0.398014158 1 20.40656012 -10.75237766 2.740837864 1.090695654 0.566811784 0.241876126 0.231444073 84180242.43 68083489.14 51741175.8 0.056904711 1.77E-11 10.75237766 -0.52388387 ESEEGNPVRGSEEDS(ph)PKK ddPTM_HeLa_A486_30min_R1 3 ESEEGNPVRGSEEDSPKK 18 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ESEEGNPVRGSEEDS(1)PKK;ESEEGNPVRGSEEDS(1)PKK;ESEEGNPVRGSEEDS(1)PKK ;; 135.68 1.98E-06 2363890000 1236380 1010377 347086 1690553 829924 1470780 2133390 2034640 759763 3535160 TRUE FALSE FALSE 1149716.147 930311.0468 481486.9945 3935692.82 725827.1932 1289330.117 1599593.257 1571396.888 825619.8686 2649932.926 0.433866131 0.351069658 0.181697804 1.485204694 0.273903987 0.486551982 0.603635376 0.592994967 0.311562553 1 21.33752441 -10.93672277 2.596943245 1.31941097 0.533427057 0.144550931 0.346411844 117312536 62254838.04 227034023.7 0.088042534 1.16E-11 10.93672277 -0.785983914 ESEEGNPVRGSEEDS(ph)PKKESK ddPTM_HeLa_A485_30min_R1 7 ESEEGNPVRGSEEDSPKKESK 21 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ESEEGNPVRGSEEDS(0.998)PKKES(0.001)K;ESEEGNPVRGS(0.001)EEDS(0.999)PKKES(0.001)K;ESEEGNPVRGS(0.006)EEDS(0.993)PKKESK;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGS(0.001)EEDS(0.999)PKKESK;ESEEGNPVRGSEEDS(0.998)PKKES(0.001)K ;;;;;; 199.03 1.22E-25 9903730000 4615484 3062605 1308611 9882250 5243428 5591100 13973130 13612140 3122617 14008910 TRUE FALSE FALSE 5642182.493 3420750.014 1792720.665 10422092.29 4721373.898 5883841.351 10987656.63 10273741.32 3749297.59 10516746.55 0.536495052 0.325266944 0.170463428 0.990999664 0.44893864 0.559473533 1.044777163 0.976893498 0.356507364 1 23.32618513 -5.606694384 0.875199431 0.808204331 0.350098993 0.268152237 0.268316366 0.898081561 1.435227495 0.131393361 0.263272262 2.47E-06 5.606694384 -0.458105338 ESEEGNPVRGSEEDS(ph)PKKESK ddPTM_HeLa_A486_30min_R1 8 ESEEGNPVRGSEEDSPKKESK 21 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ESEEGNPVRGS(0.046)EEDS(0.953)PKKESK;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGS(0.001)EEDS(0.998)PKKES(0.001)K;ESEEGNPVRGSEEDS(1)PKKESK;ESEEGNPVRGS(0.015)EEDS(0.984)PKKES(0.001)K ;;;;;;; 202.33 9.78E-26 13990912000 5114705 3302492 1067456 7469501 3367671 5853309 11611830 10222285 2532268 16731280 TRUE FALSE FALSE 4756190.592 3040790.506 1480803.551 17389375.82 2945266.301 5131187.248 8706427.317 7894893.856 2751767.029 12541658.59 0.379231388 0.242455213 0.118070791 1.386529198 0.23483866 0.409131473 0.694200632 0.629493603 0.219410137 1 23.58022482 -11.6021936 2.069906416 9.999932102 0.489847152 0.165935556 0.349519263 18887264.75 916201.1897 798872960.1 0.088183917 2.50E-12 11.6021936 -9.51008495 ESEKPLQTGLPTGLTENQSGGPLGVDS(ph)PSAELDKK ddPTM_HeLa_A485_30min_R1 1 ESEKPLQTGLPTGLTENQSGGPLGVDSPSAELDKK 35 2 J3KQH6;P78364 J3KQH6 PHC1 Polyhomeotic-like protein 1 1 0 ESEKPLQTGLPTGLTENQSGGPLGVDS(0.994)PS(0.006)AELDKK 167.77 1.03E-14 67202000 23484 20111 14426 40030 25239 21767 51161 38860 15995 55694 TRUE FALSE FALSE 28707.93478 22462.80651 19762.77772 42216.73754 22726.11654 22906.68646 40230.0344 29329.52407 19205.04979 41810.51077 0.686620045 0.537252621 0.472674869 1.009715901 0.543550321 0.547869089 0.962199066 0.701486864 0.45933545 1 15.35157805 -11.27654688 2.316396686 2.474000925 0.662848868 0.240066619 0.182426981 7978518.623 999891.1501 61942157.23 0.048187918 5.29E-12 11.27654688 -1.811152057 ESEKQQDS(ph)QPEEVMDVLEMVENVK ddPTM_HeLa_A485_30min_R1 5 ESEKQQDSQPEEVMDVLEMVENVK 24 1 Q9H307 Q9H307 PNN Pinin 1 0 ES(0.107)EKQQDS(0.893)QPEEVMDVLEMVENVK;ES(0.02)EKQQDS(0.98)QPEEVMDVLEMVENVK;ES(0.162)EKQQDS(0.838)QPEEVMDVLEMVENVK;ES(0.005)EKQQDS(0.995)QPEEVMDVLEMVENVK;ES(0.185)EKQQDS(0.815)QPEEVMDVLEMVENVK ;;;; 192.32 3.06E-21 299202000 99800.7 98188.4 59095.7 135289 145493 151165 237111 293157 100613.3 201781 TRUE FALSE FALSE 122001.0214 109670.6793 80957.65861 142679.4955 131007.2061 159079.7657 186450.2978 221259.7861 120805.4664 151480.7102 0.805389817 0.723991055 0.534442032 0.941898776 0.86484415 1.050165169 1.230851754 1.460646612 0.79749736 1 17.20877456 -5.998382406 1.40094615 1.155128045 0.708419834 0.471872108 0.18191496 0.332311613 1.343170836 0.075357357 0.084777565 1.00E-06 5.998382406 -0.446708211 ESEKQQDS(ph)QPEEVMDVLEMVENVK ddPTM_HeLa_A486_30min_R1 5 ESEKQQDSQPEEVMDVLEMVENVK 24 1 Q9H307 Q9H307 PNN Pinin 1 0 ES(0.126)EKQQDS(0.874)QPEEVMDVLEMVENVK;ES(0.004)EKQQDS(0.996)QPEEVMDVLEMVENVK;ES(0.057)EKQQDS(0.943)QPEEVMDVLEMVENVK;ES(0.176)EKQQDS(0.824)QPEEVMDVLEMVENVK;ES(0.036)EKQQDS(0.964)QPEEVMDVLEMVENVK ;;;; 198.06 9.64E-29 348410000 202839.6 143502.8 68217.2 134361.4 166246 174687.5 274036.1 280713.5 100299.7 295207.4 TRUE FALSE FALSE 188621.5915 132131.1155 94632.72676 312800.1294 145393.8765 153136.3323 205469.3693 216801.164 108993.7588 221285.5456 0.852390024 0.597106852 0.427649834 1.413558796 0.657041905 0.692030435 0.928525941 0.979734864 0.492548026 1 17.75554969 -11.13300231 0.026835036 1.879600456 1.05E-05 0.033281935 0.273590846 4224.451234 15.18534205 664.323666 420.8285017 7.36E-12 11.13300231 -1.879589939 ESEQES(ph)EEEILAQKK ddPTM_HeLa_A485_30min_R1 6 ESEQESEEEILAQKK 15 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 ESEQES(1)EEEILAQKK;ESEQES(1)EEEILAQKK;ESEQES(1)EEEILAQKK;ESEQES(1)EEEILAQKK;ESEQES(1)EEEILAQKK;ESEQES(1)EEEILAQKK ;;;;; 229.75 2.69E-34 4342980000 1834426 1264701 731009 2411100 1710790 1605076 2601930 2079437 1384132 3342390 TRUE FALSE FALSE 2242487.735 1412596.781 1001439.649 2542812.288 1540457.741 1689115.297 2046006.4 1569451.815 1661914.596 2509193.685 0.893708504 0.56296841 0.39910815 1.01339817 0.613925402 0.673170552 0.815403933 0.625480538 0.662330137 1 21.25879241 -11.03214696 3.0349314 1.387276447 0.690645192 0.233325408 0.165379445 239160657.5 267251859.5 639831066.6 0.040379396 9.29E-12 11.03214696 -0.696631255 ESEQES(ph)EEEILAQKK ddPTM_HeLa_A486_30min_R1 2 ESEQESEEEILAQKK 15 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 ES(0.031)EQES(0.969)EEEILAQKK;ESEQES(1)EEEILAQKK ; 157.22 8.85E-09 1176960000 286506 250928 98773 111496 231049 305087 335310 325730 197425 453780 TRUE FALSE FALSE 266423.4089 231043.5514 137020.5508 259568.3227 202068.68 267448.4678 251411.8915 251568.3896 214537.958 340150.5344 0.783251478 0.679239125 0.402823271 0.763098383 0.594056629 0.786265023 0.739119496 0.739579581 0.630714746 1 18.37581383 -6.267135269 24.99999902 0.760358479 0.639587079 0.202201723 0.130914658 879.0921059 3858436.496 0.044583577 0.040421248 5.41E-07 6.267135269 -0.1207714 ESGADGASTS(ph)PR ddPTM_HeLa_A485_30min_R1 5 ESGADGASTSPR 12 0 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 0 ESGADGAST(0.001)S(0.999)PR;ESGADGASTS(1)PR;ESGADGAS(0.005)T(0.024)S(0.971)PR;ESGADGASTS(1)PR;ESGADGASTS(1)PR ;;;; 243.29 6.75E-28 7441376000 7787170 9924810 9059500 8152370 12025320 8981810 10959070 11524340 9062120 10870120 TRUE FALSE FALSE 9519399.101 11085430.2 12410986.05 8597713.33 10828036.92 9452083.683 8617575.167 8697977.546 10880804.36 8160399.134 1.166535968 1.358442156 1.520879781 1.053589805 1.326900405 1.158286933 1.056023734 1.065876485 1.333366687 1 22.96020829 -5.891047106 1.157640679 1.121885028 1.325811431 0.241761493 0.141700879 0.682735236 1.940462223 0.062543333 0.080501935 1.29E-06 5.891047106 0.203926404 ESGADGASTS(ph)PR ddPTM_HeLa_A486_30min_R1 3 ESGADGASTSPR 12 0 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 0 ESGADGASTS(1)PR;ESGADGASTS(1)PR;ESGADGASTS(1)PR ;; 231.36 1.08E-23 4167290000 5909260 6717100 5880600 2364940 7623400 6237800 6968200 7197600 5877560 6739400 TRUE FALSE FALSE 5495051.389 6184812.533 8157725.808 5505699.837 6667202.087 5468243.657 5224682.658 5558863.603 6387031.633 5051810.374 1.087739045 1.224276462 1.614812355 1.089846892 1.319764915 1.082432485 1.034219868 1.100370598 1.264305499 1 22.26836906 -6.267424101 24.3306807 1.098660978 1.274347485 0.239787572 0.151967235 522.1853713 2122917.708 0.053352342 0.048317658 5.40E-07 6.267424101 0.175686507 ESGGSGFRS(ph)PHLWK ddPTM_HeLa_A485_30min_R1 5 ESGGSGFRSPHLWK 14 1 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 ES(0.003)GGS(0.002)GFRS(0.994)PHLWK;ES(0.028)GGS(0.022)GFRS(0.95)PHLWK;ES(0.405)GGS(0.053)GFRS(0.542)PHLWK;ESGGS(0.002)GFRS(0.998)PHLWK;ES(0.031)GGS(0.053)GFRS(0.916)PHLWK ;;;; 114.21 0.00011869 2583390000 1505070 1728380 1485460 1541830 2333230 2097830 2529410 2692060 1729370 2550320 TRUE FALSE FALSE 1839867.629 1930499.006 2034993.469 1626056.269 2100925.429 2207669.135 1988980.89 2031828.064 2076438.696 1914572.159 0.960981084 1.00831875 1.062897243 0.849305293 1.097334158 1.153087453 1.038864417 1.06124392 1.084544495 1 20.8685906 ESGGSGFRS(ph)PHLWK ddPTM_HeLa_A486_30min_R1 3 ESGGSGFRSPHLWK 14 1 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 ES(0.227)GGS(0.167)GFRS(0.606)PHLWK;ES(0.03)GGS(0.024)GFRS(0.946)PHLWK;ESGGSGFRS(1)PHLWK ;; 119.76 5.57E-05 2311060000 2837450 2840130 1952020 750930 3371900 2719630 3228390 3270590 2416010 3073270 TRUE FALSE FALSE 2638559.408 2615067.755 2707894.421 1748202.99 2948964.86 2384109.702 2420612.676 2525948.053 2625431.692 2303703.188 1.145355626 1.135158283 1.175452825 0.758866419 1.280097573 1.034903157 1.050748503 1.096472873 1.139657099 1 21.13552342 ESGNS(ph)QELAR ddPTM_HeLa_A485_30min_R1 1 ESGNSQELAR 10 0 Q86W50 Q86W50 METTL16 Methyltransferase-like protein 16 1 0 ES(0.003)GNS(0.997)QELAR 66.784 0.011792 0 139720 155130 128490 182840 171980 161800 176480 177830 135040 244890 TRUE FALSE FALSE 170800.232 173271.104 176023.7979 192828.0862 154857.0673 170271.5978 138773.6063 134216.9137 162141.2893 183843.4299 0.929052684 0.942492773 0.957465807 1.04887124 0.842331257 0.926177226 0.7548467 0.730060975 0.881953135 1 17.48811809 -6.119602527 1.957653912 0.828810117 0.963361662 0.247328485 0.083386842 0.390840961 2.964719175 0.031628111 0.031983661 7.59E-07 6.119602527 0.134551545 ESGVAGDPWKEET(ph)DTDLEVVLEK ddPTM_HeLa_A485_30min_R1 1 ESGVAGDPWKEETDTDLEVVLEK 23 1 Q1ED39 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 ESGVAGDPWKEET(0.888)DT(0.112)DLEVVLEK 108.32 0.00026871 70167000 45876 29967 18648 87475 58476 45817 83385 64280 34831 126190 TRUE FALSE FALSE 56080.95793 33471.37997 25546.67121 92253.53775 52653.92412 48215.90727 65569.11356 48515.22921 41821.26221 94733.15535 0.591988705 0.353322761 0.269669802 0.97382524 0.555813051 0.508965495 0.692145356 0.512125127 0.441463837 1 16.53158182 -11.32961522 2.164179081 3.346673822 0.545994846 0.359019971 0.182629081 6525369.223 785252.1345 74933161.1 0.046870916 4.68E-12 11.32961522 -2.800678976 ESGVAGDPWKEETDT(ph)DLEVVLEK ddPTM_HeLa_A485_30min_R1 3 ESGVAGDPWKEETDTDLEVVLEK 23 1 Q1ED39 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 ESGVAGDPWKEET(0.002)DT(0.998)DLEVVLEK;ESGVAGDPWKEET(0.158)DT(0.841)DLEVVLEK;ESGVAGDPWKEET(0.033)DT(0.967)DLEVVLEK ;; 200.48 1.18E-28 415585000 568740 309612 210775 930960 537560 492510 944300 809910 363652 1293820 TRUE FALSE FALSE 695254.2509 345818.4301 288749.4436 981815.9875 484038.6389 518297.062 742542.5908 611278.3026 436633.6208 971294.485 0.715801708 0.356038705 0.297283108 1.010832454 0.498343856 0.533614748 0.764487601 0.629343945 0.449537836 1 19.88954924 -14 0.330183386 5.168630761 0.568571155 0.274004226 0.200210548 495.4253934 4.295958522 1450.43341 0.172683614 1.00E-14 14 -4.600059606 ESGVAGDPWKEETDT(ph)DLEVVLEK ddPTM_HeLa_A486_30min_R1 4 ESGVAGDPWKEETDTDLEVVLEK 23 1 Q1ED39 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 ESGVAGDPWKEET(0.005)DT(0.995)DLEVVLEK;ESGVAGDPWKEET(0.01)DT(0.99)DLEVVLEK;ESGVAGDPWKEET(0.093)DT(0.907)DLEVVLEK;ESGVAGDPWKEET(0.011)DT(0.989)DLEVVLEK ;;; 199.2 1.28E-28 534352000 682672 777190 329192 620186 749165 1135220 1528880 1274140 646997 1503990 TRUE FALSE FALSE 634820.2181 715602.6339 456663.9585 1443824.35 655197.74 995168.0985 1146338.053 984046.1363 703079.2209 1127381.115 0.563092826 0.634747757 0.405066177 1.280688785 0.581167922 0.882725536 1.016815022 0.872860228 0.623639346 1 20.10454387 -5.225367804 24.99986184 0.880302672 0.544346785 0.417620532 0.194065478 602.9087947 417852.8805 0.050662373 0.087746335 5.95E-06 5.225367804 -0.335955887 ESGVVAVS(ph)PEKSES(ph)PQKEDGLSSQLK ddPTM_HeLa_A485_30min_R1 1 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 ES(0.018)GVVAVS(0.958)PEKS(0.132)ES(0.862)PQKEDGLS(0.014)S(0.015)QLK 53.867 0.02231 261510000 140090 144540 126120 291430 209090 176730 223630 239260 155490 369670 TRUE FALSE FALSE 171252.5372 161442.6957 172777.0363 307350.083 188272.2654 185983.3095 175849.6236 180581.1099 186695.4168 277518.0723 0.617086072 0.581737594 0.622579405 1.107495741 0.678414432 0.67016648 0.633651071 0.650700361 0.672732465 1 18.0822222 -11.31406228 2.08861628 2.378944716 0.695542223 0.296512036 0.141927809 7050977.81 904024.9542 45862733.43 0.037407617 4.85E-12 11.31406228 -1.683402493 ESGVVAVS(ph)PEKSES(ph)PQKEDGLSSQLK ddPTM_HeLa_A486_30min_R1 3 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 ESGVVAVS(1)PEKS(0.217)ES(0.783)PQKEDGLSSQLK;ESGVVAVS(0.952)PEKS(0.053)ES(0.994)PQKEDGLSSQLK;ESGVVAVS(1)PEKS(0.053)ES(0.947)PQKEDGLSSQLK ;; 143.75 4.35E-09 2056270000 1297180 1044840 274357 1691620 798660 1902970 2854180 2311630 844420 4125230 TRUE FALSE FALSE 1206254.381 962043.0732 380595.3779 3938176.85 698484.6156 1668200.909 2140033.976 1785322.312 917615.0055 3092245.557 0.390090101 0.311114708 0.12308058 1.273565368 0.225882648 0.539478796 0.692064694 0.577354637 0.296747134 1 21.56022346 -14 0.20043795 3.152155691 0.42575698 0.18744532 0.309735996 252.0398186 2.494575335 219.1628693 0.740581797 1.00E-14 14 -2.726398712 ESGVVAVS(ph)PEKSESPQKEDGLSSQLK ddPTM_HeLa_A486_30min_R1 1 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 ESGVVAVS(1)PEKSESPQKEDGLSSQLK 146.58 2.48E-09 211650000 140490 135110 41229 137300 112480 203190 315540 274990 129960 363820 TRUE FALSE FALSE 130642.3765 124403.3915 57193.97295 319641.3388 98371.70957 178122.4837 236588.5546 212380.78 141225.0374 272717.1039 0.479039908 0.456162777 0.209719054 1.172061943 0.360709718 0.653140126 0.867523713 0.778758563 0.517844445 1 18.05704566 -4.837590649 0.149402847 1.043630324 1.81E-20 0.236790964 0.250281035 31.59381363 1.007148339 1.393994157 6.826736897 1.45E-05 4.837590649 -1.043630324 ESHT(ph)PVS(ph)IQEEIVGDFK ddPTM_HeLa_A485_30min_R1 2 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 2 0 ES(0.394)HT(0.606)PVS(1)IQEEIVGDFK;ES(0.468)HT(0.545)PVS(0.987)IQEEIVGDFK ; 171.85 5.12E-12 27909000 44758 49536 38959 58958 53175 51693 60689 69797 46038 83738 TRUE FALSE FALSE 54714.26269 55328.80429 53371.55532 62178.72625 47880.71029 54399.56555 47722.29937 52679.17631 55277.40431 62863.65768 0.87036397 0.880139755 0.84900493 0.989104493 0.761659631 0.865357944 0.759139718 0.837990951 0.879322113 1 15.9399386 -5.774706102 24.99924705 0.838645014 0.892498897 0.075109487 0.072469995 508.1625745 957556.3554 0.021342013 0.024337674 1.68E-06 5.774706102 0.053853883 ESHT(ph)PVS(ph)IQEEIVGDFK ddPTM_HeLa_A486_30min_R1 3 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 2 0 ES(0.11)HT(0.92)PVS(0.97)IQEEIVGDFK;ES(0.428)HT(0.582)PVS(0.99)IQEEIVGDFK;ES(0.443)HT(0.56)PVS(0.997)IQEEIVGDFK ;; 152.88 5.72E-08 35923000 101123 97787 61235 44927 85181 89009 118603 111704 86443 133620 TRUE FALSE FALSE 94034.7999 90038.00199 84946.83193 104592.3265 74496.8047 78027.97456 88927.27495 86271.43768 93935.94884 100160.6823 0.93883945 0.89893559 0.848105564 1.044245348 0.743772936 0.779027986 0.887846138 0.861330372 0.937852526 1 16.61195677 -10.20255622 3.456487578 1.000210806 0.878915637 0.161365668 0.080236201 94048759.55 144899958.6 215257.5361 0.020015708 6.27E-11 10.20255622 -0.121295169 ESHT(ph)PVSIQEEIVGDFK ddPTM_HeLa_A485_30min_R1 3 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 ES(0.157)HT(0.843)PVSIQEEIVGDFK;ES(0.136)HT(0.864)PVSIQEEIVGDFK;ES(0.134)HT(0.866)PVSIQEEIVGDFK ;; 203.06 5.21E-25 342880000 488670 499670 398290 587390 557660 520470 649960 655140 502130 804280 TRUE FALSE FALSE 597372.9556 558102.0599 545634.0452 619477.6283 502137.4123 547721.0044 511090.7363 494465.8878 602902.8852 603787.7977 0.989375668 0.924334778 0.903685115 1.02598567 0.831645512 0.90714156 0.846474106 0.818939849 0.998534398 1 19.20368208 -5.769273206 24.99961171 0.889038101 0.954154545 0.149037571 0.066697619 301.6551176 962651.9815 0.019846743 0.022914425 1.70E-06 5.769273206 0.065116444 ESHT(ph)PVSIQEEIVGDFK ddPTM_HeLa_A486_30min_R1 2 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 ES(0.164)HT(0.836)PVSIQEEIVGDFK;ES(0.168)HT(0.831)PVS(0.001)IQEEIVGDFK ; 168.75 5.94E-12 292628000 342640 347980 196342 112690 295090 338350 370710 359470 286020 411690 TRUE FALSE FALSE 318622.7054 320404.7975 272370.8806 262348.015 258077.0606 296607.8171 277954.437 277626.5282 310812.4439 308600.1443 1.0324775 1.038252261 0.882601274 0.850122788 0.83628302 0.961139593 0.900694449 0.89963188 1.007168822 1 18.23537921 -4.754775822 24.93789357 0.909314184 1.03536495 0.419515859 0.054973448 133.2146246 498532.7147 0.014238876 0.035871738 1.76E-05 4.754775822 0.126050766 ESIESEIRR ddPTM_HeLa_A485_30min_R1 4 ESIESEIRR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;;; ;;; 160.74 3.29E-05 627605000 354834.5 501900 486806 355504 598856 510897 600463 731549 464330 523546 FALSE FALSE TRUE 433766.2104 560592.8391 666895.7971 374924.2833 539231.7939 537646.7769 472169.1747 552135.4607 557516.7719 393035.6174 1.103630794 1.426315617 1.696782092 0.953919357 1.371966738 1.367933982 1.201339405 1.404797521 1.418489183 1 18.58430053 -9.994460952 4.506514558 0.999990952 1.33113467 0.206539316 0.192284201 28299754.11 31381324.47 2152.435863 0.045633444 1.01E-10 9.994460952 0.331143718 ESIESEIRR ddPTM_HeLa_A486_30min_R1 3 ESIESEIRR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;; ;; 156.62 8.16E-05 688060000 359642 435992 360650 136226 544167 384477 427620 458675 348726 411750 FALSE FALSE TRUE 334432.953 401442.4061 500303.3385 317141.0125 475912.5007 337044.1368 320624.9531 354244.7153 378953.8505 308645.12 1.083551728 1.300660144 1.620966301 1.027526411 1.541940792 1.092011877 1.038814264 1.147741184 1.227797966 1 18.23558946 -6.37385589 22.69127658 1.106593893 1.315409409 0.266260532 0.177225467 16.5791571 3319.8217 0.060602524 0.053446404 4.23E-07 6.37385589 0.208815516 ESIPAKS(ph)PVPGVDPVVSHSPFDPHHR ddPTM_HeLa_A486_30min_R1 1 ESIPAKSPVPGVDPVVSHSPFDPHHR 26 1 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 ES(0.004)IPAKS(0.996)PVPGVDPVVSHSPFDPHHR 131.78 3.35E-06 260390000 209540 178230 138940 40511 187630 189640 200700 203900 143680 176460 TRUE FALSE FALSE 194852.3281 164106.4057 192741.2889 94311.65531 164095.6958 166244.1449 150482.7372 157476.4211 156134.2981 132273.2674 1.473104368 1.240661918 1.457144687 0.713006166 1.24058095 1.256823454 1.137665532 1.190538528 1.180391935 1 17.013162 ESKGS(ph)PVFLPR ddPTM_HeLa_A485_30min_R1 5 ESKGSPVFLPR 11 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 ES(0.203)KGS(0.797)PVFLPR;ES(0.008)KGS(0.992)PVFLPR;ES(0.159)KGS(0.841)PVFLPR;ES(0.012)KGS(0.988)PVFLPR;ES(0.013)KGS(0.987)PVFLPR ;;;; 152.88 2.39E-07 8234397000 2794630 3266180 2398540 3153300 3952320 3544840 4708660 5134790 2931560 4266910 TRUE FALSE FALSE 3416285.802 3648131.339 3285859.758 3325556.794 3558813.143 3730442.341 3702616.325 3875474.701 3519897.202 3203247.864 1.066506854 1.138885124 1.025790041 1.038182787 1.111001488 1.164581231 1.155894418 1.20985789 1.098852587 1 21.61110401 -5.977021354 6.338394822 1.140620968 1.069734521 0.159107567 0.059030446 0.241523788 34.23378264 0.018113712 0.020191056 1.05E-06 5.977021354 -0.070886447 ESKGS(ph)PVFLPR ddPTM_HeLa_A486_30min_R1 6 ESKGSPVFLPR 11 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 ES(0.033)KGS(0.967)PVFLPR;ES(0.111)KGS(0.889)PVFLPR;ES(0.001)KGS(0.999)PVFLPR;ES(0.119)KGS(0.881)PVFLPR;ES(0.057)KGS(0.943)PVFLPR;ES(0.004)KGS(0.996)PVFLPR ;;;;; 158.91 6.72E-08 7046593000 5568230 5552270 3543860 2228065 5988880 5445490 7004650 7223700 4631580 6783620 TRUE FALSE FALSE 5177925.831 5112287.904 4916137.5 5187047.92 5237698.826 4773680.809 5252012.482 5579021.202 5033049.084 5084957.398 1.018283031 1.005374776 0.966800135 1.020076967 1.030037897 0.938784819 1.032852799 1.097161837 0.98979179 1 22.27780426 -6.969692174 24.9978157 1.039087632 0.997166669 0.147218902 0.037121121 297.5343703 245404.8131 0.015067496 0.010158424 1.07E-07 6.969692174 -0.041920963 ESLCDS(ph)PHQNLSRPLLENK ddPTM_HeLa_A485_30min_R1 6 ESLCDSPHQNLSRPLLENK 19 1 O15042-2;O15042;E7ET15;E7EW00;C9J5L1;H0Y8D9;U3KPT1;C9JDJ7 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK ;;;;; 225.26 3.46E-35 6374290000 1534001 1399285 1155908 1673813 2084614 1581904 2284475 2337872 1372738 2180552 TRUE FALSE FALSE 1875234.23 1562919.209 1583526.471 1765249.166 1877062.511 1664730.047 1796378.254 1764505.226 1648233.925 1636980.516 1.145544624 0.954757368 0.967345949 1.078356858 1.146661485 1.016951656 1.09737302 1.077902399 1.006874491 1 20.64260572 -4.204515317 21.52980953 1.044476923 1.14554859 0.228967752 0.058011518 18975.76931 7175648.825 0.015295631 17.2517618 6.24E-05 4.204515317 0.101071666 ESLCDS(ph)PHQNLSRPLLENK ddPTM_HeLa_A486_30min_R1 4 ESLCDSPHQNLSRPLLENK 19 1 O15042-2;O15042;E7ET15;E7EW00;C9J5L1;H0Y8D9;U3KPT1;C9JDJ7 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 ES(0.003)LCDS(0.984)PHQNLS(0.013)RPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK;ESLCDS(1)PHQNLSRPLLENK ;;; 223.97 3.98E-35 4332030000 1893155 1904418 1075479 708916 1995130 1873160 2461690 2355300 1422946 2256320 TRUE FALSE FALSE 1760454.611 1753504.982 1491933.271 1650392.275 1744882.192 1642068.564 1845749.125 1819049.606 1546288.105 1691322.786 1.040874412 1.036765422 0.882110312 0.975799705 1.03166717 0.970878284 1.091305066 1.07551889 0.914247782 1 20.68972059 -5.754501776 24.83828045 1.019427691 0.980394656 0.047583516 0.062270434 433.786408 1553052.062 0.019174213 0.024178713 1.76E-06 5.754501776 -0.039033035 ESLKEEDES(ph)DDDNM ddPTM_HeLa_A485_30min_R1 21 ESLKEEDESDDDNM 14 1 H0YJ03;G3V4X5;P25788-2;P25788 H0YJ03 PSMA3 Proteasome subunit alpha type-3 1 0 ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM ;;;;;;;;;;;;;;;;;;;; 210.31 2.25E-22 90810940000 32665300 27363230 20546010 53989800 38805610 34271840 56051840 53670910 26965590 70244200 TRUE FALSE FALSE 39931583.29 30563121.72 28146834.09 56939126.06 34941987.21 36066260.55 44075906.48 40508035.17 32377336.57 52733613.69 0.757232067 0.579575712 0.533755078 1.079750127 0.662613175 0.683933037 0.835821849 0.76816346 0.613979098 1 25.65221953 -11.60447366 2.210566758 6.941270144 0.726120099 0.240395849 0.14720473 5841582.09 377876.8258 174866506.1 0.038165769 2.49E-12 11.60447366 -6.215150045 ESLKEEDES(ph)DDDNM ddPTM_HeLa_A486_30min_R1 22 ESLKEEDESDDDNM 14 1 H0YJ03;G3V4X5;P25788-2;P25788 H0YJ03 PSMA3 Proteasome subunit alpha type-3 1 0 ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ES(0.001)LKEEDES(0.999)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM;ESLKEEDES(1)DDDNM ;;;;;;;;;;;;;;;;;;;;; 206.28 4.01E-22 1.93E+11 35177660 33193840 16519760 21035230 30725364.4 39191330 52006240 47281420 26039890 59419400 TRUE FALSE FALSE 32711887.69 30563439.23 22916653.49 48971078.5 26871502.69 34356302.17 38993728.69 36516472.81 28297048.63 44540395.48 0.734431909 0.686195955 0.51451392 1.09947561 0.603306334 0.771351529 0.875468847 0.819850664 0.63531202 1 25.40861103 -14 0.158731771 1.860770027 0.688533446 0.18328625 0.155059997 233.519351 2.136869654 64.06808186 0.664061666 1.00E-14 14 -1.17223658 ESLPPAAEPS(ph)PVSK ddPTM_HeLa_A485_30min_R1 4 ESLPPAAEPSPVSK 14 0 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 1 0 ESLPPAAEPS(0.998)PVS(0.002)K;ESLPPAAEPS(1)PVSK;ESLPPAAEPS(1)PVSK;ESLPPAAEPS(1)PVSK ;;; 191.96 7.80E-18 807890000 623572 613501 617360 868506 836738 643606 834333 788918 630778 994386 TRUE FALSE FALSE 762283.4401 685244.6052 845747.1545 915950.2836 753429.4268 677304.215 656070.9387 595434.6235 757369.3588 746503.8705 1.021137961 0.917938449 1.132944098 1.22698665 1.009277321 0.907301679 0.878858054 0.797630993 1.014555167 1 19.50979021 -6.134457515 4.063749408 0.904789648 1.072329576 0.370333251 0.093898624 0.254520724 7.15071951 0.0338271 0.034002535 7.34E-07 6.134457515 0.167539928 ESLPPAAEPS(ph)PVSK ddPTM_HeLa_A486_30min_R1 2 ESLPPAAEPSPVSK 14 0 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 1 0 ESLPPAAEPS(1)PVSK;ESLPPAAEPS(1)PVSK ; 225.85 6.38E-28 884860000 1143260 1093300 689490 546850 1154550 1216540 1513930 1350110 987480 1410250 TRUE FALSE FALSE 1063123.378 1006662.926 956478.9932 1273094.436 1009735.573 1066455.664 1135128.701 1042719.426 1073075.561 1057114.221 1.005684492 0.95227451 0.904801936 1.204311144 0.955181146 1.008836739 1.073799481 0.986382933 1.015098975 1 20.01169984 ESLPT(ph)SPPWTPGASRPPSSLDGWVS(ph)PGPWEPGR ddPTM_HeLa_A485_30min_R1 1 ESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGR 33 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 2 0 ESLPT(0.499)S(0.499)PPWT(0.004)PGAS(0.001)RPPS(0.012)S(0.01)LDGWVS(0.975)PGPWEPGR 127.76 2.66E-06 87874000 52795 80042 72880 64580 86973 77865 86647 93741 68524 81539 TRUE FALSE FALSE 64539.06561 89402.21563 99841.34479 68107.84187 78313.66274 81941.891 68134.16061 70750.87277 82276.13826 61212.82791 1.054338899 1.460514384 1.631052644 1.112640017 1.279366849 1.3386392 1.113069971 1.155817746 1.344099612 1 15.9015464 -8.872544394 0.226794787 0.88907116 1.379466439 0.200033111 0.168365562 11.27036767 1.09251244 1.537440606 0.445509885 1.34E-09 8.872544394 0.490395279 ESLPT(ph)SPPWTPGASRPPSSLDGWVS(ph)PGPWEPGR ddPTM_HeLa_A486_30min_R1 1 ESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGR 33 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 2 0 ES(0.01)LPT(0.469)S(0.469)PPWT(0.012)PGAS(0.012)RPPS(0.027)S(0.028)LDGWVS(0.973)PGPWEPGR 48.025 0.028128 99370000 34302 40850 36158 14777 42771 35567 40401 47503 34428 42047 TRUE FALSE FALSE 31897.60694 37612.89723 50159.34594 34401.60279 37406.26236 31179.10516 30292.24248 36687.60388 37412.24676 31518.15752 1.012039074 1.193372335 1.591442835 1.09148521 1.186816277 0.989242634 0.961104483 1.164014865 1.187006148 1 14.94389558 -5.466602045 24.99985027 1.084417734 1.272238649 0.23004819 0.153150706 434.1493901 192861.822 0.044593817 0.066142974 3.42E-06 5.466602045 0.187820915 ESLPTS(ph)PPWTPGASRPPSSLDGWVSPGPWEPGR ddPTM_HeLa_A485_30min_R1 1 ESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGR 33 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 ESLPT(0.139)S(0.861)PPWTPGASRPPSSLDGWVSPGPWEPGR 159.65 1.86E-11 164470000 26251 26567 35177 30351 48906 34728 44587 46592 36145 39739 TRUE FALSE FALSE 32090.44439 29673.77955 48190.43614 32008.99828 44036.74692 36546.30438 35060.62321 35165.23895 43398.96996 29832.79864 1.075676633 0.994669655 1.615350833 1.072946547 1.476118531 1.225037745 1.175237484 1.178744219 1.45474015 1 14.8646117 -11.22090834 2.489307634 0.108585176 1.251284423 0.13551956 0.190975575 9763754.006 2662987.071 50447276.61 0.047717624 6.01E-12 11.22090834 1.142699247 ESLPTS(ph)PPWTPGASRPPSSLDGWVSPGPWEPGR ddPTM_HeLa_A486_30min_R1 1 ESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGR 33 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 ESLPT(0.009)S(0.991)PPWTPGASRPPSSLDGWVSPGPWEPGR 150.63 6.31E-10 144190000 76210 76933 64816 30635 81985 67857 82125 81515 72375 71838 TRUE FALSE FALSE 70868.07255 70836.54889 89914.49103 71319.82821 71701.67682 59485.49326 61576.45637 62955.81396 78648.52327 53849.29721 1.316044521 1.315459116 1.669743073 1.324433779 1.331524839 1.104666102 1.143496008 1.169111153 1.460530171 1 15.7166399 -5.927487905 2.487281993 1.185854295 1.42277753 0.35759825 0.14595783 0.332429085 4.176372551 0.050392919 0.057535167 1.18E-06 5.927487905 0.236923236 ESLPTSPPWTPGASRPPSSLDGWVS(ph)PGPWEPGR ddPTM_HeLa_A485_30min_R1 1 ESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGR 33 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 ESLPT(0.01)S(0.01)PPWT(0.067)PGAS(0.144)RPPS(0.144)S(0.144)LDGWVS(0.481)PGPWEPGR 74.397 0.00049456 28198000 7358.6 9944.6 8588.9 9117.7 12212 9710.9 10143 13792 10434 12567 TRUE FALSE FALSE 8995.495183 11107.53446 11766.29152 9615.776864 10996.1304 10219.34771 7975.865189 10409.49037 12528.00809 9434.278178 0.95349056 1.177359227 1.247185137 1.019238216 1.165550792 1.083214584 0.8454134 1.103369031 1.32792439 1 13.20369643 ESLS(ph)PGK ddPTM_HeLa_A485_30min_R1 1 ESLSPGK 7 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 ESLS(1)PGK 109.02 0.0031144 946010000 1732300 1160200 894580 3137700 1543000 1331700 2046100 1375000 1465800 4228700 TRUE FALSE FALSE 2117644.159 1295875.298 1225522.369 3309104.606 1389373.502 1401425.753 1608934.02 1037779.094 1759972.615 3174562.913 0.66706637 0.408205896 0.386044442 1.042381171 0.437658204 0.441454711 0.506820644 0.326904561 0.554398405 1 21.59812654 -10.290236 4.428690464 1.000341154 0.525360966 0.34564342 0.193862996 0.000660085 0.000105789 0.18970128 0.045976836 5.13E-11 10.290236 -0.474980188 ESLS(ph)PGK ddPTM_HeLa_A486_30min_R1 3 ESLSPGK 7 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 ESLS(1)PGK;ES(0.003)LS(0.997)PGK;ES(0.001)LS(0.999)PGK ;; 108.81 0.0031346 2110110000 2099720 2053090 1028710 1083630 1512220 2818310 2918580 2514850 1907900 3579420 TRUE FALSE FALSE 1952540.471 1890395.671 1427054.062 2522745.404 1322543.267 2470615.567 2188320.414 1942273.554 2073278.308 2683109.934 0.727715419 0.704553938 0.53186567 0.940231845 0.492914304 0.920802959 0.815591037 0.723888921 0.772714633 1 21.35547474 -6.292890056 24.99810377 0.827404524 0.687138503 0.273111127 0.134237571 1069.036461 849704.3682 0.045206293 0.039872307 5.09E-07 6.292890056 -0.140266021 ESLS(ph)PGKLK ddPTM_HeLa_A485_30min_R1 2 ESLSPGKLK 9 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 ESLS(1)PGKLK;ES(0.024)LS(0.976)PGKLK ; 117.09 0.000292 2459300000 2190000 1664610 1032720 3461900 2720700 2388300 4318300 4207600 1763570 4794500 TRUE FALSE FALSE 2677157.945 1859271.659 1414766.103 3651014.831 2449817.555 2513347.695 3395659.928 3175679.503 2117502.323 3599319.386 0.743795606 0.516562011 0.393064897 1.014362561 0.680633557 0.698284155 0.943417231 0.882300002 0.588306314 1 21.7792927 -5.255996076 24.99953698 0.817772767 0.547682962 0.40185688 0.155202976 469.3792866 2155718.29 0.041971033 0.070121935 5.55E-06 5.255996076 -0.270089805 ESLS(ph)PGKLK ddPTM_HeLa_A486_30min_R1 3 ESLSPGKLK 9 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 ES(0.005)LS(0.995)PGKLK;ES(0.098)LS(0.902)PGKLK;ES(0.228)LS(0.772)PGKLK ;; 63.408 0.0057676 2717400000 5388870 4466460 2010460 3949860 4880830 6282000 9285360 8876050 3335750 9295200 TRUE FALSE FALSE 5011138.041 4112521.443 2788963.954 9195473.695 4268630.789 5506990.711 6962064.717 6855167.178 3624895.496 6967621.418 0.719203547 0.590233194 0.400274898 1.319743589 0.612638163 0.790368819 0.999202497 0.983860455 0.52024863 1 22.73223481 -5.212963404 24.999989 0.877678444 0.571936857 0.301895511 0.222158238 502.9661846 259388.4488 0.058461697 0.101258387 6.12E-06 5.212963404 -0.305741587 ESLSTHT(ph)SPS(ph)QSPNSVHGSR ddPTM_HeLa_A486_30min_R1 1 ESLSTHTSPSQSPNSVHGSR 20 0 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 2 0 ES(0.065)LS(0.071)T(0.071)HT(0.387)S(0.41)PS(0.925)QS(0.064)PNS(0.008)VHGSR 61.602 0.026392 74755000 44674 52694 52790 8362.5 71174 29363 38088 39833 56314 18279 TRUE FALSE FALSE 41542.5833 48518.33553 73231.70177 19468.32262 62246.69325 25740.4916 28557.97955 30763.89545 61195.34286 13701.81942 3.031902699 3.541014082 5.344669894 1.42085675 4.542950927 1.878618511 2.084247257 2.245241635 4.466220213 1 13.74207986 -5.870285046 1.225556656 2.46744806 3.720602594 0.142491796 1.291832593 0.939019108 2.974633566 0.535990433 0.694977122 1.35E-06 5.870285046 1.253154535 ESLT(ph)PGREENPSSVLAQER ddPTM_HeLa_A485_30min_R1 4 ESLTPGREENPSSVLAQER 19 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 ES(0.001)LT(0.999)PGREENPSSVLAQER;ES(0.027)LT(0.973)PGREENPSSVLAQER;ESLT(1)PGREENPSSVLAQER;ESLT(1)PGREENPSSVLAQER ;;; 247.89 5.90E-46 1444880000 505410 587410 585810 675310 858370 596930 746270 725650 583360 818570 TRUE FALSE FALSE 617836.7109 656102.4897 802525.4966 712200.4753 772907.6689 628184.3318 586823.318 547683.1997 700435.0011 614515.5637 1.005404496 1.067674325 1.305948204 1.15896247 1.25775117 1.02224316 0.954936462 0.891243822 1.139816536 1 19.22909002 -6.42156084 6.231434877 0.987562175 1.161683566 0.390180935 0.098525117 0.247397571 12.82465893 0.036227278 0.031746206 3.79E-07 6.42156084 0.174121392 ESLT(ph)PGREENPSSVLAQER ddPTM_HeLa_A486_30min_R1 4 ESLTPGREENPSSVLAQER 19 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 ES(0.006)LT(0.994)PGREENPSSVLAQER;ES(0.061)LT(0.939)PGREENPSSVLAQER;ESLT(1)PGREENPSSVLAQER;ES(0.001)LT(0.999)PGREENPSSVLAQER ;;; 286.57 4.86E-70 1643530000 755990 821440 711870 366059 989160 807730 895770 952260 689590 881640 TRUE FALSE FALSE 702999.0049 756346.1028 987525.1285 852203.8516 865090.3292 708080.485 671638.8715 735451.1857 749364.2164 660871.6055 1.06374521 1.144467543 1.494276831 1.289515005 1.30901422 1.071434268 1.016292523 1.112850332 1.133902879 1 19.33401049 -6.26913055 23.9239979 1.070786407 1.268406435 0.428408202 0.111396972 347.9967878 1082467.336 0.041644231 0.037467051 5.38E-07 6.26913055 0.197620028 ESLTEAEVATEKEGEDGDQPT(ph)TPPKPLK ddPTM_HeLa_A486_30min_R1 1 ESLTEAEVATEKEGEDGDQPTTPPKPLK 28 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 ESLTEAEVATEKEGEDGDQPT(0.635)T(0.365)PPKPLK 148.75 3.42E-09 527790000 506970 414420 88932 275990 277880 608380 813090 604960 340310 1068700 TRUE FALSE FALSE 471434.021 381579.8499 123368.8521 642518.6678 243025.6993 533324.2612 609646.282 467223.8142 369808.3448 801090.5639 0.588490293 0.476325483 0.15400113 0.802054969 0.303368571 0.665747776 0.761020426 0.583234699 0.461631133 1 19.61160582 -14 0.1573328 2.709769397 0.403058312 0.369840037 0.185943489 142.7035025 1.300397953 76.17433369 0.820152915 1.00E-14 14 -2.306711085 ESLTEAEVATEKEGEDGDQPTT(ph)PPKPLK ddPTM_HeLa_A485_30min_R1 1 ESLTEAEVATEKEGEDGDQPTTPPKPLK 28 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 ESLTEAEVATEKEGEDGDQPT(0.137)T(0.863)PPKPLK 83.633 0.0037787 718700000 677580 338060 163040 1157300 441440 556570 987570 761240 366020 1556400 TRUE FALSE FALSE 828305.3334 377593.1763 223355.2807 1220520.369 397488.6836 585711.1446 776567.6018 574544.6964 439476.8567 1168418.123 0.708911747 0.323166141 0.191160404 1.044592123 0.34019387 0.50128557 0.664631596 0.491728676 0.376129784 1 20.15612521 -10.20546079 4.179389074 1.000226088 0.514181121 0.283729088 0.230807375 225717713.1 379723710.1 658597.4987 0.058260995 6.23E-11 10.20546079 -0.486044967 ESLTEAEVATEKEGEDGDQPTT(ph)PPKPLK ddPTM_HeLa_A486_30min_R1 1 ESLTEAEVATEKEGEDGDQPTTPPKPLK 28 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 ESLTEAEVATEKEGEDGDQPT(0.22)T(0.78)PPKPLK 123.73 7.81E-06 621180000 701140 545940 126450 378520 322170 823440 1018500 896030 444460 1438100 TRUE FALSE FALSE 651993.7067 502677.7261 175414.8264 881213.6893 281760.4345 721852.3449 763660.5274 692023.5292 482986.1507 1077990.4 0.604823296 0.466310021 0.162723923 0.817459682 0.261375644 0.669627805 0.708411251 0.641957043 0.448043091 1 20.0399129 -14 0.161496744 2.764193654 0.406828836 0.359748234 0.19065019 142.4311803 1.313714069 80.34906519 0.772567446 1.00E-14 14 -2.357364818 ESMCSTPAFPVS(ph)PETPYVK ddPTM_HeLa_A485_30min_R1 1 ESMCSTPAFPVSPETPYVK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 ESMCSTPAFPVS(0.937)PET(0.061)PY(0.002)VK 78.708 0.00045567 0 0 2601.8 4089.8 1909.8 2098.2 1650.6 1350.3 3360 1254.9 0 TRUE FALSE FALSE 0 2906.057877 5602.787211 2014.127538 1889.295841 1737.022864 1061.797374 2535.954732 1506.746919 0 0 ESNRLS(ph)APSYLAR ddPTM_HeLa_A485_30min_R1 3 ESNRLSAPSYLAR 13 1 H0YJH0;Q9H4B6 H0YJH0 SAV1 Protein salvador homolog 1 1 0 ESNRLS(1)APSYLAR;ES(0.005)NRLS(0.995)APSYLAR;ESNRLS(1)APSYLAR ;; 172.37 1.61E-12 1787360000 708600 837820 814890 753900 990420 797750 939730 955760 773780 1000030 TRUE FALSE FALSE 866225.6254 935795.7609 1116351.721 795083.648 891810.3072 839518.9564 738949.0086 721358.3614 929070.5485 750740.9252 1.153827634 1.246496267 1.486999954 1.05906528 1.187906876 1.118253885 0.984292962 0.960861913 1.237538167 1 19.51795561 -5.777209582 1.428707878 1.054478449 1.27842717 0.35437935 0.120949462 0.445026584 1.895725094 0.046634909 0.063785333 1.67E-06 5.777209582 0.223948721 ESNRLS(ph)APSYLAR ddPTM_HeLa_A486_30min_R1 2 ESNRLSAPSYLAR 13 1 H0YJH0;Q9H4B6 H0YJH0 SAV1 Protein salvador homolog 1 1 0 ESNRLS(1)APSYLAR;ES(0.003)NRLS(0.997)APSYLAR ; 121.03 3.75E-05 1326740000 725780 763730 654160 211957 830400 724370 802810 814380 623430 711880 TRUE FALSE FALSE 674906.5699 703209.2533 907468.271 493446.6077 726243.4888 635004.5943 601938.4467 628963.4518 677469.4144 533620.6144 1.264768548 1.31780751 1.700586983 0.92471429 1.36097345 1.189992622 1.128026974 1.178671578 1.269571295 1 19.02545488 -5.267249886 24.99989094 1.167229813 1.416729661 0.388752216 0.158249397 516.6234255 2222789.066 0.043090954 0.065926815 5.40E-06 5.267249886 0.249499848 ESNYFGLS(ph)PEER ddPTM_HeLa_A485_30min_R1 4 ESNYFGLSPEER 12 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 ESNYFGLS(1)PEER;ESNYFGLS(1)PEER;ESNYFGLS(1)PEER;ESNYFGLS(1)PEER ;;; 207.85 2.47E-17 1336260000 718150 803260 806140 818680 1054690 760410 863190 993590 754500 1015290 TRUE FALSE FALSE 877899.9899 897194.2696 1104364.732 863402.4154 949681.3604 800223.8918 678762.4049 749910.4946 905921.2293 762196.888 1.151802118 1.177116154 1.448923171 1.132781344 1.245979058 1.049891313 0.890534212 0.983880289 1.188565899 1 19.53980419 -6.318042106 4.418623838 1.009492914 1.235588791 0.488752439 0.10682612 0.190819493 7.828432146 0.039172855 0.034895543 4.81E-07 6.318042106 0.226095877 ESNYFGLS(ph)PEER ddPTM_HeLa_A486_30min_R1 4 ESNYFGLSPEER 12 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 ESNYFGLS(1)PEER;ESNYFGLS(1)PEER;ESNYFGLS(1)PEER;ESNYFGLS(1)PEER ;;; 294 1.20E-68 1156160000 772860 864906 734542 294377 921994 785835 839904 912602 691723 840920 TRUE FALSE FALSE 718686.5051 796367.6986 1018976.334 685324.533 806348.9153 688886.6675 629751.1356 704822.4466 751682.1066 630348.1585 1.140142151 1.263377529 1.616529406 1.087215888 1.279211979 1.092866947 0.999052868 1.118147863 1.192487194 1 19.26578936 -5.954282052 1.558217595 1.083551394 1.314145373 0.32136559 0.141312006 0.468036664 2.331645728 0.056296391 0.064992333 1.11E-06 5.954282052 0.23059398 ESNYFGLS(ph)PEERR ddPTM_HeLa_A486_30min_R1 2 ESNYFGLSPEERR 13 1 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 ESNYFGLS(1)PEERR;ESNYFGLS(1)PEERR ; 87.16 0.0012719 178580000 120091 137980 147442 38763 188012 99079 125522 144703 119980 92226 TRUE FALSE FALSE 111673.2411 127045.9623 204535.491 90242.22297 164429.7818 86855.64034 94115.06796 111757.2857 130379.963 69132.00931 1.615362293 1.837729925 2.958622107 1.305360916 2.378489841 1.256373729 1.361381926 1.616578006 1.88595651 1 16.07706624 -6.271282835 24.87436292 1.458676897 2.021578239 0.286880913 0.467492691 920.2522382 2325466.021 0.160912289 0.143596227 5.35E-07 6.271282835 0.562901341 ESPFSTSAS(ph)PLLSGSQHFDVPPR ddPTM_HeLa_A485_30min_R1 1 ESPFSTSASPLLSGSQHFDVPPR 23 0 O14980 O14980 XPO1 Exportin-1 1 0 ESPFS(0.012)T(0.045)S(0.052)AS(0.886)PLLS(0.003)GS(0.001)QHFDVPPR 94.275 0.0011555 71548000 25694 28680 34651 25895 40893 26886 31862 31981 31304 40461 TRUE FALSE FALSE 31409.54166 32033.87652 47469.84685 27309.57828 36821.54934 28293.70939 25054.42341 24137.60961 37586.42566 30374.81733 1.034065203 1.054619561 1.56280271 0.899086173 1.212239367 0.931485746 0.824841945 0.794658593 1.237420632 1 14.89058811 -6.270675575 22.43464682 0.936545021 1.155830416 0.193184212 0.196719103 257.7558994 626082.9594 0.068263376 0.061196041 5.36E-07 6.270675575 0.219285395 ESPFSTSAS(ph)PLLSGSQHFDVPPR ddPTM_HeLa_A486_30min_R1 2 ESPFSTSASPLLSGSQHFDVPPR 23 0 O14980 O14980 XPO1 Exportin-1 1 0 ES(0.097)PFS(0.092)T(0.092)S(0.092)AS(0.62)PLLS(0.003)GS(0.003)QHFDVPPR;ES(0.157)PFS(0.144)T(0.144)S(0.144)AS(0.411)PLLSGSQHFDVPPR ; 51.844 0.010955 187970000 36624.2 47976 45529.3 4655.8 49949.8 41457.4 42000 36565 40750.3 24778.3 TRUE FALSE FALSE 34057.03271 44174.20703 63159.46428 10838.93769 43684.63032 36342.8075 31491.15577 28239.94771 44282.56881 18573.6524 1.833620656 2.378326356 3.40048704 0.583565228 2.351967689 1.956686101 1.695474594 1.520430506 2.384160523 1 14.18096992 -9.985102539 0.127460108 6.34E-11 2.642421783 0.164714379 0.687241921 66.57551264 1.750884306 32.44541439 7.887574216 1.03E-10 9.985102539 2.642421782 ESPFSTSAS(ph)PLLSGSQHFDVPPRR ddPTM_HeLa_A485_30min_R1 2 ESPFSTSASPLLSGSQHFDVPPRR 24 1 O14980 O14980 XPO1 Exportin-1 1 0 ESPFSTS(0.001)AS(0.999)PLLSGSQHFDVPPRR;ESPFST(0.001)SAS(0.999)PLLSGSQHFDVPPRR ; 145.65 2.77E-09 390230000 44705 47366 51228 34843 57317 32437 41041 47677 42924 39627 TRUE FALSE FALSE 54649.47302 52905.04167 70179.36897 36746.38486 51610.31823 34135.35116 32272.25508 35984.141 51538.45308 29748.71818 1.837036227 1.778397353 2.35907203 1.235225822 1.734875362 1.147456201 1.084828425 1.209603075 1.732459623 1 14.86053989 -5.279296768 24.81556288 1.317087822 1.970191431 0.565966811 0.274652885 541.5944856 752626.8319 0.077537959 0.115286078 5.26E-06 5.279296768 0.653103609 ESPFSTSAS(ph)PLLSGSQHFDVPPRR ddPTM_HeLa_A486_30min_R1 1 ESPFSTSASPLLSGSQHFDVPPRR 24 1 O14980 O14980 XPO1 Exportin-1 1 0 ESPFSTSAS(1)PLLSGSQHFDVPPRR 167.27 3.63E-14 197790000 13523 16288 14996 3737.3 18376 12401 15249 6288.4 15405 10421 TRUE FALSE FALSE 12575.10753 14997.27956 20802.85281 8700.623273 16071.11073 10871.0907 11433.53891 4856.668595 16740.3178 7811.513771 1.609816983 1.919894146 2.663101342 1.113820385 2.057361889 1.391675292 1.463677752 0.621732066 2.143031209 1 12.93138644 -6.209771481 1.090034678 1.258196697 1.952194302 0.214782069 0.513036081 0.738636447 1.837797502 0.261097811 0.247697805 6.17E-07 6.209771481 0.693997606 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_A485_30min_R1 5 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 1 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR ;;;; 342.77 4.94E-131 9558780000 851549 942028 1153913 1012825 1197045 862622 1188258 1008471 1133082 1375049 TRUE FALSE FALSE 1040973.137 1052189.98 1580793.437 1068153.065 1077862.997 907787.5541 934376.9711 761141.906 1360481.164 1032274.59 1.008426583 1.019292725 1.531369126 1.034756716 1.044163062 0.879405114 0.9051632 0.737344417 1.317945028 1 19.97739536 -5.508302748 24.00378689 0.966040613 1.188556978 0.182839765 0.193190142 626.1687613 1031175.85 0.055244102 0.078574249 3.10E-06 5.508302748 0.222516365 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_A486_30min_R1 6 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 1 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR ;;;;; 369.44 2.52E-172 14232850000 1791050 2414580 1867410 780335 2363580 1972390 2245150 2186360 1901170 1972220 TRUE FALSE FALSE 1665506.644 2223239.887 2590521.163 1816659.316 2067117.757 1729056.576 1683389.723 1688573.556 2065964.946 1478363.275 1.126588216 1.503852216 1.752289986 1.22883147 1.398247502 1.169574897 1.138684755 1.142191222 1.397467714 1 20.49556939 -6.001381801 1.664872283 1.175493522 1.446635338 0.282881274 0.18089732 0.481711347 2.710371472 0.071104136 0.078653343 9.97E-07 6.001381801 0.271141816 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A485_30min_R1 4 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 41 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR ;;; 235.15 2.30E-52 8068940000 395058 751595 674987 345389 784542 861415 941617 1361745 573347 413318 TRUE FALSE FALSE 482937.2892 839487.4972 924692.7799 364256.7265 706430.2438 906517.3574 740432.8356 1027774.904 688412.4838 310285.4292 1.556429158 2.705533094 2.980136007 1.173940805 2.276710981 2.921559546 2.386295862 3.312353102 2.218642641 1 18.24323642 -6.01156588 24.66389605 2.522970749 2.149027485 0.004813038 0.742639868 1618.992973 3452460.39 0.232499412 0.245958846 9.74E-07 6.01156588 -0.373943264 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_A486_30min_R1 4 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 41 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR ;;; 253.06 1.14E-65 5761000000 713830 607160 562190 215357 783730 455539 659786 731658 400721 659433 TRUE FALSE FALSE 663794.2032 559046.4304 779885.024 501361.9795 685427.2754 399339.2298 494700.5643 565075.4454 435455.8189 494306.6846 1.342879277 1.130970808 1.577735135 1.014273113 1.386643751 0.807877462 1.000796833 1.14316772 0.880942606 1 18.91504689 -6.25386466 24.99848475 0.977644899 1.282249187 0.498288974 0.162230834 518.4592153 1711047.653 0.051656871 0.05071318 5.57E-07 6.25386466 0.304604289 ESQIDVLQQDELDS(ph)YPDSVKK ddPTM_HeLa_A485_30min_R1 1 ESQIDVLQQDELDSYPDSVKK 21 1 Q9NQS3 Q9NQS3 PVRL3 Nectin-3 1 0 ESQIDVLQQDELDS(1)YPDSVKK 127.63 8.45E-07 89812000 46077 33743 21744 62337 38518 45908 85550 83140 35730 131510 TRUE FALSE FALSE 56326.66969 37688.95032 29788.01044 65742.31246 34683.01268 48311.67189 67271.54362 62749.78464 42900.68327 98726.97726 0.570529669 0.381749258 0.301721082 0.665900185 0.351302285 0.489346207 0.681389682 0.635589039 0.434538608 1 16.59115674 -14 0.183530641 3.09642804 0.401570362 0.595100656 0.125238153 91.96756693 0.890551247 70.170506 0.37238914 1.00E-14 14 -2.694857678 ESQLAHIKDEPPPLS(ph)PAPLTPAT(ph)PSSLDPFFSR ddPTM_HeLa_A486_30min_R1 1 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 ES(0.009)QLAHIKDEPPPLS(0.987)PAPLT(0.004)PAT(0.983)PS(0.014)S(0.003)LDPFFSR 151 3.04E-08 72015000 51055 48346 33236 11276 76649 51583 76778 69026 34556 41085 TRUE FALSE FALSE 47476.30815 44514.88689 46105.86929 26251.09786 67034.9677 45219.21392 57567.33233 53310.28663 37551.3419 30797.04858 1.541586299 1.445427044 1.497087267 0.852390053 2.17666857 1.468296996 1.869248353 1.731019337 1.219316254 1 14.91050448 -7.953241943 4.853362588 1.002334253 1.566928984 0.261372469 0.321288193 0.232453592 11.64193725 0.308733844 0.080601172 1.11E-08 7.953241943 0.564594731 ESQLAHIKDEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_HeLa_A485_30min_R1 4 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 ES(0.025)QLAHIKDEPPPLS(0.975)PAPLTPATPSSLDPFFSR;ES(0.041)QLAHIKDEPPPLS(0.919)PAPLT(0.041)PATPSSLDPFFSR;ES(0.01)QLAHIKDEPPPLS(0.99)PAPLTPATPSSLDPFFSR;ES(0.001)QLAHIKDEPPPLS(0.999)PAPLTPATPSSLDPFFSR ;;; 196.96 3.22E-29 4255710000 259844 350444 298044 275372 506818 405199 529872 596745 332205 453060 TRUE FALSE FALSE 317645.4013 391425.3773 408302.8782 290414.8751 456357.4204 426414.5931 416660.5185 450392.3531 398875.4963 340120.48 0.933920243 1.150843305 1.20046543 0.85385883 1.341752253 1.25371631 1.225038018 1.324214152 1.172747658 1 18.37568635 -5.781977636 24.99999973 1.237768665 1.054897882 0.322115453 0.128417818 278.7556726 339311.1044 0.03835261 0.043536205 1.65E-06 5.781977636 -0.182870783 ESQLAHIKDEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_HeLa_A486_30min_R1 4 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 ESQLAHIKDEPPPLS(1)PAPLTPATPSSLDPFFSR;ES(0.002)QLAHIKDEPPPLS(0.998)PAPLTPATPSSLDPFFSR;ES(0.004)QLAHIKDEPPPLS(0.996)PAPLTPATPSSLDPFFSR;ESQLAHIKDEPPPLS(1)PAPLTPATPSSLDPFFSR ;;; 228.14 1.29E-39 3660130000 1248890 1103412 970310 244690 1566150 1114495 1542900 1531050 942859 1137795 TRUE FALSE FALSE 1161349.26 1015973.615 1346040.018 569650.6859 1369708.863 976999.9383 1156850.101 1182463.338 1024586.777 852883.7262 1.361673608 1.191221714 1.578222185 0.667911309 1.605973735 1.145525361 1.356398376 1.38642971 1.201320585 1 19.70198955 -8.018507923 21.55346804 0.999999983 1.281658506 0.108535737 0.248896067 443.551535 516543.1313 0.22268436 0.057496855 9.58E-09 8.018507923 0.281658523 ESQLAHIKDEPPPLSPAPLT(ph)PAT(ph)PSSLDPFFSR ddPTM_HeLa_A485_30min_R1 1 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 ES(0.001)QLAHIKDEPPPLS(0.05)PAPLT(0.948)PAT(0.929)PS(0.054)S(0.016)LDPFFSR 86.769 0.00024726 90577000 15433 17912 16941 15602 27608 20793 24738 31410 17167 23572 TRUE FALSE FALSE 18866.01761 20006.65259 23208.18087 16454.29775 24859.25058 21881.68933 19452.52421 23706.64825 20612.25943 17695.93421 1.066121595 1.130579056 1.311497918 0.92983493 1.404800125 1.236537674 1.099265175 1.339666387 1.164801993 1 14.11113031 -4.528528082 24.47273079 1.197046467 1.082235896 0.061434088 0.14115615 240.738277 1042876.742 0.033977436 0.090556122 2.96E-05 4.528528082 -0.114810571 ESRPGLVTVTSSQS(ph)TPAK ddPTM_HeLa_A485_30min_R1 1 ESRPGLVTVTSSQSTPAK 18 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ESRPGLVTVT(0.001)S(0.015)S(0.076)QS(0.528)T(0.38)PAK 93.006 0.00031023 203200000 228430 139900 132410 337200 243570 157390 268310 201450 163440 386600 TRUE FALSE FALSE 279243.4654 156260.088 181393.969 355620.3822 219319.3156 165630.697 210983.3766 152044.0716 196240.9088 290227.7348 0.96215293 0.538405084 0.625005633 1.225314949 0.755680072 0.570692174 0.72695801 0.523878504 0.676161804 1 18.14682587 -6.003611385 24.99959098 0.670571105 0.824815051 0.077991246 0.21081864 374.5976698 2593154.818 0.067006635 0.074409726 9.92E-07 6.003611385 0.154243945 ESRPGLVTVTSSQST(ph)PAK ddPTM_HeLa_A485_30min_R1 1 ESRPGLVTVTSSQSTPAK 18 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ESRPGLVTVTSS(0.001)QS(0.03)T(0.969)PAK 90.884 0.00086517 319160000 252580 138690 154630 371070 252730 172240 264260 185990 176830 470790 TRUE FALSE FALSE 308765.5496 154908.5891 211834.0717 391340.6145 227567.3138 181258.2201 207798.6922 140375.6609 212318.159 353430.7172 0.873623979 0.438299733 0.599365198 1.107262599 0.643880972 0.512853612 0.587947459 0.397180138 0.600734879 1 18.43106791 -10.09034483 5.321408599 1.000005276 0.634418689 0.22743355 0.198729926 1.30E-05 2.22E-06 0.200627527 0.04865862 8.12E-11 10.09034483 -0.365586588 ESRPGLVTVTSSQST(ph)PAK ddPTM_HeLa_A486_30min_R1 1 ESRPGLVTVTSSQSTPAK 18 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ESRPGLVTVT(0.001)S(0.002)S(0.005)QS(0.125)T(0.867)PAK 97.253 0.00054226 283800000 358230 436160 258180 172310 378960 477330 550430 479630 363120 487290 TRUE FALSE FALSE 333119.9269 401597.0931 358154.2103 401146.3881 331427.3031 418441.8777 412706.5921 370428.7192 394595.534 365269.4123 0.911984184 1.099454484 0.980520674 1.098220586 0.907350279 1.14557054 1.129869018 1.014124662 1.080286278 1 18.47860142 -6.280871169 24.97453206 1.078346563 1.009488115 0.196700905 0.073610937 1455.740143 1870970.909 0.024850847 0.021946044 5.24E-07 6.280871169 -0.068858448 ESRPGLVTVTSSQST(ph)PAKAPR ddPTM_HeLa_A485_30min_R1 3 ESRPGLVTVTSSQSTPAKAPR 21 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ESRPGLVTVTSSQS(0.06)T(0.94)PAKAPR;ESRPGLVTVTSS(0.001)QS(0.249)T(0.749)PAKAPR;ESRPGLVTVTSS(0.001)QS(0.039)T(0.96)PAKAPR ;; 142.23 2.37E-09 3289870000 857800 814960 691870 894990 1183380 926780 1354250 1303890 752760 1198840 TRUE FALSE FALSE 1048614.651 910262.4828 947821.5041 943881.0375 1065558.532 975304.7677 1064903.424 984108.9331 903832.0273 899991.251 1.165138716 1.011412591 1.053145242 1.048766903 1.183965434 1.083682499 1.183237529 1.093465 1.004267571 1 19.77955145 -7.754685054 5.618467159 1.00013308 1.101435885 0.343573785 0.055764719 0.186058973 19.10830859 0.046804746 0.014643593 1.76E-08 7.754685054 0.101302805 ESRPGLVTVTSSQST(ph)PAKAPR ddPTM_HeLa_A486_30min_R1 4 ESRPGLVTVTSSQSTPAKAPR 21 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ESRPGLVTVTS(0.002)S(0.011)QS(0.057)T(0.93)PAKAPR;ESRPGLVTVTSSQS(0.072)T(0.927)PAKAPR;ESRPGLVTVTSSQS(0.039)T(0.961)PAKAPR;ESRPGLVTVTSS(0.002)QS(0.128)T(0.87)PAKAPR ;;; 143.25 2.23E-09 3368880000 1869270 2049920 1269054 847563 2140210 1959710 2360570 2258990 1374354 2166670 TRUE FALSE FALSE 1738243.826 1887476.874 1760465.695 1973169.497 1871764.905 1717940.905 1769930.418 1744667.29 1493484.111 1624121.729 1.07026696 1.162152343 1.083949351 1.214914782 1.152478211 1.057766098 1.089776946 1.074221999 0.919564146 1 20.63122834 -7.331914692 1.202011138 0.966102096 1.132224112 0.58441973 0.051173786 0.338684075 0.858911958 0.044521038 0.016591887 4.66E-08 7.331914692 0.166122016 ESRPS(ph)EEREWDR ddPTM_HeLa_A485_30min_R1 2 ESRPSEEREWDR 12 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 ES(0.249)RPS(0.751)EEREWDR;ES(0.002)RPS(0.998)EEREWDR ; 135.55 1.10E-05 2627900000 875900 1140120 1089610 943640 1186290 1024750 1049830 1125770 1141530 1178040 TRUE FALSE FALSE 1070740.933 1273447.116 1492702.081 995188.6638 1068178.802 1078404.325 825525.2442 849673.1424 1370624.6 884376.3082 1.210730006 1.439938072 1.687858514 1.125300005 1.207832901 1.219395313 0.933454726 0.960759729 1.549820577 1 19.75430085 -5.296137183 24.16130648 1.137963774 1.445551819 0.333300631 0.196835917 449.7145205 313151.0771 0.055619657 0.082502728 5.06E-06 5.296137183 0.307588045 ESRPS(ph)EEREWDR ddPTM_HeLa_A486_30min_R1 2 ESRPSEEREWDR 12 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 ES(0.075)RPS(0.925)EEREWDR;ES(0.117)RPS(0.883)EEREWDR ; 87.088 0.0017701 2480100000 575210 670150 579340 169740 737050 591920 583600 614390 576410 648180 TRUE FALSE FALSE 534890.7494 617044.8734 803675.9633 395163.2982 644602.3163 518894.9286 437577.1073 474506.809 626373.6829 485871.5091 1.100889308 1.269975419 1.654091562 0.813308232 1.326692972 1.067967392 0.900602524 0.97660966 1.289175577 1 18.89021531 -5.271082323 24.99985656 1.05812258 1.334484441 0.313473992 0.195258443 832.1291194 2157339.34 0.054721306 0.08237019 5.36E-06 5.271082323 0.276361861 ESRPS(ph)EEREWDREK ddPTM_HeLa_A486_30min_R1 1 ESRPSEEREWDREK 14 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 ES(0.287)RPS(0.713)EEREWDREK 77.08 0.038047 1755800000 634520 726160 369980 28682 773440 680700 584440 677010 585540 245230 TRUE FALSE FALSE 590043.4247 668616.437 513246.1644 66773.14551 676427.9432 596722.1549 438206.9304 522869.602 636295.0787 183822.8118 3.20984876 3.637287616 2.792070034 0.36324733 3.679782376 3.246181194 2.383855007 2.844421739 3.46145874 1 17.48795629 -4.915863851 6.37838533 2.513581251 3.397882005 0.131495257 0.996852503 0.458462318 27.9503017 0.263216057 0.557611618 1.21E-05 4.915863851 0.884300754 ESRRS(ph)ES(ph)LS(ph)PR ddPTM_HeLa_A485_30min_R1 1 ESRRSESLSPR 11 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 3 0 ES(0.147)RRS(0.854)ES(0.998)LS(1)PR 60.246 0.030515 386460000 140440 214960 356470 238400 795850 428470 578880 935460 393170 402270 TRUE FALSE FALSE 171680.3935 240097.7021 488343.087 251423.1883 716612.3796 450904.0267 455197.559 706036.9683 472075.6126 301991.4922 0.568494139 0.795047901 1.617075645 0.832550568 2.372955524 1.493101754 1.507319149 2.337936619 1.563208318 1 18.20414838 -4.582080344 0.887739487 1.723593823 0.188692294 0.373531441 0.465499598 1.403490945 1.213594932 0.165510275 1.907580414 2.62E-05 4.582080344 -1.534901528 ESRRS(ph)ES(ph)LS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ESRRSESLSPR 11 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 3 0 ES(0.032)RRS(0.968)ES(1)LS(1)PR;ES(0.039)RRS(0.966)ES(0.995)LS(1)PR ; 83.37 0.0051803 193180000 271930 273020 467770 230313 890170 373810 537150 684640 288210 323170 TRUE FALSE FALSE 252869.1112 251384.9009 648903.0713 536180.3034 778516.5781 327693.1228 402749.3886 528762.4176 313192.2749 242246.1285 1.043852023 1.037725153 2.678693258 2.213369958 3.213742085 1.352728008 1.662562746 2.182748681 1.29286803 1 17.88611408 -7.915013225 4.658896877 1.007564376 1.941919999 0.186707851 0.659428472 0.33301877 11.92271658 0.671880067 0.175873914 1.22E-08 7.915013225 0.934355623 ESRS(ph)PQQSAALPR ddPTM_HeLa_A485_30min_R1 1 ESRSPQQSAALPR 13 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ESRS(1)PQQSAALPR 223.45 9.00E-28 1011400000 263390 340730 277140 429670 610380 422280 580220 685890 333680 614140 TRUE FALSE FALSE 321980.1968 380575.4095 379665.6188 453141.7841 549608.424 444389.9278 456251.257 517674.4021 400646.5153 461046.2004 0.698368616 0.825460462 0.823487144 0.982855479 1.192089694 0.963872877 0.989599864 1.122825438 0.868994289 1 18.8145518 -5.213707012 2.767323233 1.028983164 0.771066398 0.608771128 0.087367838 0.180073915 2.726150936 0.024889555 0.046505088 6.11E-06 5.213707012 -0.257916766 ESRS(ph)PQQSAALPR ddPTM_HeLa_A486_30min_R1 2 ESRSPQQSAALPR 13 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ES(0.034)RS(0.966)PQQSAALPR;ES(0.008)RS(0.992)PQQSAALPR ; 202.84 7.78E-22 1472650000 545570 587370 548460 399270 893390 632620 935210 954890 482040 946080 TRUE FALSE FALSE 507328.3603 540824.662 760838.4003 929520.738 781332.6957 554573.7764 701210.5664 737482.3921 523823.6153 709175.4101 0.715377822 0.762610568 1.072849382 1.310706385 1.101748149 0.781998034 0.988768867 1.039915346 0.738637589 1 19.43578299 -4.712839834 6.938072567 1.011573834 0.733990478 0.327319243 0.151977863 0.24966416 27.36179188 0.041769796 0.110578536 1.94E-05 4.712839834 -0.277583356 ESS(ph)KVPR ddPTM_HeLa_A485_30min_R1 2 ESSKVPR 7 1 E5RJ29;Q9NYI0-2;Q9NYI0 E5RJ29 PSD3 PH and SEC7 domain-containing protein 3 1 0 ES(0.148)S(0.852)KVPR;ES(0.417)S(0.583)KVPR ; 64.42 0.014031 468820000 281200 425360 178016 1043700 643640 326810 606350 467840 208410 1100860 TRUE FALSE FALSE 343751.9699 475102.1519 243871.5263 1100714.688 579556.9416 343921.2663 476798.3691 353101.5065 250235.9754 826435.8618 0.415945127 0.574880851 0.295088267 1.331881564 0.70127274 0.416149979 0.5769333 0.427258209 0.302789347 1 19.65654333 -6.244950972 23.48484218 0.510848998 0.675503145 0.029548587 0.309287471 1230.171166 1752161.41 0.103874841 0.103515733 5.69E-07 6.244950972 0.164654147 ESS(ph)KVPR ddPTM_HeLa_A486_30min_R1 2 ESSKVPR 7 1 E5RJ29;Q9NYI0-2;Q9NYI0 E5RJ29 PSD3 PH and SEC7 domain-containing protein 3 1 0 ES(0.489)S(0.511)KVPR;ES(0.019)S(0.981)KVPR ; 82.279 0.0052422 526070000 449720 685010 162606 676590 364890 558480 829570 758920 294297 1532720 TRUE FALSE FALSE 418196.9504 630727.3128 225571.3979 1575135.713 319122.0937 489580.4158 622002.8117 586130.4831 319806.9009 1148916.936 0.363992328 0.548975555 0.196333948 1.370974406 0.277759065 0.426123422 0.541381881 0.510159146 0.278355111 1 20.13184307 -10.41542509 3.285180254 1.00584667 0.512172706 0.1853206 0.312808007 140589217.5 188286976.4 7714259.919 0.074892618 3.84E-11 10.41542509 -0.493673964 ESS(ph)LLVSELEDTTEK ddPTM_HeLa_A486_30min_R1 1 ESSLLVSELEDTTEK 15 0 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 ES(0.017)S(0.983)LLVSELEDTTEK 230.38 3.89E-34 13016000 40163 44777 22217 23053 47681 56303 67850 54812 41170 56561 TRUE FALSE FALSE 37347.7811 41228.70744 30820.01739 53668.54903 41700.40437 49356.90831 50873.21236 42332.50414 44738.64875 42397.75745 0.880890485 0.972426608 0.72692565 1.265834616 0.983552124 1.164139598 1.199903377 0.998460925 1.055212621 1 15.37170034 -5.257799787 24.9977582 1.097806908 0.87131549 0.51614363 0.104175274 257.0021709 1765156.709 0.027740817 0.045732394 5.52E-06 5.257799787 -0.226491417 ESS(ph)PEKEAEEGCPEK ddPTM_HeLa_A486_30min_R1 1 ESSPEKEAEEGCPEK 15 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.002)S(0.998)PEKEAEEGCPEK 188.04 2.62E-18 922980000 625450 564260 142480 462460 306580 762410 954900 752820 418860 1402000 TRUE FALSE FALSE 581609.1848 519545.9826 197652.0717 1076630.251 268125.8777 668351.6058 715973.9201 581419.3199 455167.122 1050930.075 0.553423295 0.494367794 0.188073476 1.024454697 0.255131987 0.635962013 0.681276459 0.553242631 0.433108856 1 20.00323525 -11.25259842 2.317401312 2.778760949 0.53793037 0.28690895 0.219681305 10316000.54 1598466.846 96325892.14 0.05364019 5.59E-12 11.25259842 -2.240830579 ESS(ph)PEKEAEEGCPEKESEEGCPK ddPTM_HeLa_A485_30min_R1 3 ESSPEKEAEEGCPEKESEEGCPK 23 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.369)S(0.631)PEKEAEEGCPEKESEEGCPK;ES(0.258)S(0.742)PEKEAEEGCPEKESEEGCPK;ES(0.124)S(0.876)PEKEAEEGCPEKESEEGCPK ;; 364.93 3.99E-156 4888940000 2196217 875366 631945 7447830 2119642 1617550 4174710 2723731 1291558 9717240 TRUE FALSE FALSE 2684757.895 977732.439 865727.7529 7854686.094 1908603 1702242.417 3282749.104 2055731.702 1550761.844 7294910.901 0.368031623 0.134029387 0.118675576 1.076735028 0.261634861 0.233346567 0.450005373 0.281803538 0.212581328 1 22.79845893 -10.79079153 2.64135707 1.181458329 0.351963533 0.358376416 0.261469264 85531928.53 61591157.87 99818723.38 0.06862536 1.62E-11 10.79079153 -0.829494796 ESS(ph)PEKEAEEGCPEKESEEGCPK ddPTM_HeLa_A486_30min_R1 3 ESSPEKEAEEGCPEKESEEGCPK 23 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.114)S(0.886)PEKEAEEGCPEKESEEGCPK;ES(0.126)S(0.874)PEKEAEEGCPEKESEEGCPK;ES(0.152)S(0.843)PEKEAEEGCPEKES(0.005)EEGCPK ;; 329.47 1.34E-122 2505390000 760541 904195 175028 1461210 620786 1570110 2544760 2057640 580682 2927130 TRUE FALSE FALSE 707231.0033 832543.2952 242803.529 3401770.725 542921.2313 1376405.792 1908034.132 1589160.29 631015.9833 2194157.596 0.322324615 0.379436416 0.110659111 1.55037666 0.247439488 0.627304891 0.869597579 0.724268983 0.28758918 1 21.06523572 ESS(ph)PFLSPLEASR ddPTM_HeLa_A485_30min_R1 3 ESSPFLSPLEASR 13 0 Q9UP95-4;Q9UP95-3;Q9UP95-5;Q9UP95-2;Q9UP95-6;Q9UP95 Q9UP95-4 SLC12A4 Solute carrier family 12 member 4 1 0 ES(0.09)S(0.898)PFLS(0.012)PLEASR;ES(0.027)S(0.973)PFLSPLEASR;ES(0.003)S(0.997)PFLSPLEASR ;; 139.86 3.07E-06 187124000 449980 480770 427851 482910 524720 497300 584830 571840 436796 734550 TRUE FALSE FALSE 550076.4986 536991.8694 586130.8893 509290.1505 472477.0344 523337.859 459876.2929 431595.3434 524456.9507 551440.2034 0.997527012 0.973798911 1.062909243 0.923563693 0.856805564 0.949038274 0.83395496 0.782669346 0.951067672 1 19.07284493 -5.461365607 5.521083381 0.884611707 1.006862311 0.394968263 0.063230634 0.201509749 12.49605935 0.017789902 0.026237071 3.46E-06 5.461365607 0.122250604 ESS(ph)PFLSPLEASR ddPTM_HeLa_A486_30min_R1 2 ESSPFLSPLEASR 13 0 Q9UP95-4;Q9UP95-3;Q9UP95-5;Q9UP95-2;Q9UP95-6;Q9UP95 Q9UP95-4 SLC12A4 Solute carrier family 12 member 4 1 0 ESS(1)PFLSPLEASR;ES(0.001)S(0.999)PFLSPLEASR ; 184.98 3.34E-17 174241000 344240 348060 264960 96768 391870 343620 340780 350030 311180 390890 TRUE FALSE FALSE 320110.5537 320478.458 367559.6079 225280.7944 342718.0106 301227.6581 255513.2396 270335.8101 338153.333 293008.5997 1.092495421 1.093751031 1.254432833 0.768853865 1.169651713 1.02805057 0.872033243 0.922620737 1.154073066 1 18.16058348 -5.231008325 24.99150763 0.989091824 1.141578856 0.266952524 0.120630053 980.721548 805416.8661 0.032159501 0.055692847 5.87E-06 5.231008325 0.152487032 ESS(ph)PIPS(ph)PTSDR ddPTM_HeLa_A485_30min_R1 1 ESSPIPSPTSDR 12 0 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ESS(1)PIPS(0.998)PT(0.002)SDR 145.52 3.98E-07 398610000 259300 329980 238090 259610 290490 292470 333880 304960 244320 349450 TRUE FALSE FALSE 316980.3904 368568.2906 326169.3988 273791.8369 261567.7956 307783.277 262543.8105 230168.0818 293352.783 262338.5462 1.208287517 1.4049338 1.243314807 1.043658437 0.997062 1.173229331 1.00078244 0.877370425 1.118222188 1 18.00107028 -5.201915881 3.497128146 1.02663913 1.309653746 0.651743767 0.086263578 0.141994793 3.482071119 0.024317336 0.043927807 6.28E-06 5.201915881 0.283014616 ESS(ph)PIPS(ph)PTSDR ddPTM_HeLa_A486_30min_R1 3 ESSPIPSPTSDR 12 0 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.458)S(0.542)PIPS(0.976)PT(0.013)S(0.011)DR;ES(0.08)S(0.92)PIPS(0.995)PT(0.004)S(0.001)DR;ES(0.093)S(0.907)PIPS(0.989)PT(0.009)S(0.002)DR ;; 134.68 3.72E-05 406830000 2599320 2956890 1840070 775500 2886580 2600640 2717440 2832710 2191420 2689550 TRUE FALSE FALSE 2417121.091 2722575.268 2552594.383 1805403.192 2524518.22 2279799.478 2037507.77 2187763.771 2381374.05 2016069.174 1.198927657 1.350437427 1.266124405 0.89550657 1.252198215 1.130814115 1.010633859 1.085163048 1.181196598 1 20.94311371 -5.041094215 24.81023315 1.088729855 1.283082205 0.435352721 0.099990866 392.192978 236782.2812 0.026219607 0.045420897 9.10E-06 5.041094215 0.19435235 ESS(ph)PIPS(ph)PTSDRK ddPTM_HeLa_A485_30min_R1 3 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.054)S(0.913)PIPS(0.584)PT(0.415)S(0.033)DRK;ES(0.011)S(0.989)PIPS(0.997)PT(0.003)SDRK;ES(0.017)S(0.983)PIPS(0.998)PT(0.002)SDRK ;; 215.87 1.50E-27 2318990000 2280140 1799470 1145250 2710930 1783870 1843790 2731690 2289610 1407220 3259130 TRUE FALSE FALSE 2787349.277 2009902.363 1568925.633 2859021.241 1606261.639 1940327.993 2148042.116 1728079.558 1689636.146 2446688.871 1.139233235 0.821478524 0.641244439 1.168526687 0.656504249 0.793042391 0.877938401 0.706293137 0.690580714 1 21.22239922 ESS(ph)PIPS(ph)PTSDRK ddPTM_HeLa_A486_30min_R1 3 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.037)S(0.957)PIPS(0.91)PT(0.074)S(0.021)DRK;ES(0.07)S(0.93)PIPS(0.92)PT(0.069)S(0.012)DRK;ES(0.011)S(0.989)PIPS(0.98)PT(0.02)SDRK ;; 222.45 9.56E-28 2686210000 3274950 3232450 1438550 1467390 2363240 3413870 4016350 3498040 2445770 5092000 TRUE FALSE FALSE 3045392.917 2976298.89 1995595.086 3416158.078 2066820.403 2992701.429 3011416.749 2701612.654 2657771.313 3816930.057 0.797864481 0.779762491 0.522827261 0.895001487 0.541487628 0.784059803 0.788963042 0.707797265 0.696311243 1 21.86398132 -10.4218657 2.893919316 1.005860553 0.722415383 0.363006473 0.109754834 34269806.74 39988984.17 1659130.894 0.026590268 3.79E-11 10.4218657 -0.283445169 ESS(ph)PIPSPTSDRK ddPTM_HeLa_A485_30min_R1 4 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ES(0.025)S(0.974)PIPSPTSDRK;ES(0.16)S(0.84)PIPSPTSDRK;ES(0.003)S(0.997)PIPSPTSDRK;ES(0.062)S(0.936)PIPS(0.002)PTSDRK ;;; 103.3 0.00031705 1743130000 2184690 1960480 1392070 2394450 2346320 2154140 2779120 2782340 1788600 3157690 TRUE FALSE FALSE 2670666.753 2189741.082 1907054.622 2525252.74 2112712.142 2266927.439 2185338.309 2099966.752 2147555.614 2370535.996 1.126608817 0.923732475 0.804482457 1.065266566 0.891238161 0.956293194 0.921875185 0.885861576 0.905936724 1 21.17678187 -4.261274651 24.12740235 0.924658626 1.126608877 0.44569439 0.066235358 7.261870793 1062116.916 0.015733277 0.088129622 5.48E-05 4.261274651 0.201950251 ESS(ph)PIPSPTSDRK ddPTM_HeLa_A486_30min_R1 2 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ES(0.011)S(0.989)PIPSPTSDRK;ES(0.008)S(0.992)PIPSPTSDRK ; 109.1 0.00020202 1382450000 1871470 1756450 831820 560320 1343780 1727170 1928120 1730970 1253120 2285300 TRUE FALSE FALSE 1740289.617 1617262.505 1153922.981 1304453.277 1175230.582 1514089.326 1445683.982 1336865.918 1361741.451 1713046.005 1.015903608 0.944085857 0.673608868 0.761481754 0.686047297 0.883857947 0.843925953 0.780402811 0.79492404 1 20.70813247 -4.584811344 7.052948572 0.794116905 0.998642838 0.390348267 0.089852044 0.170905127 15.61262518 0.022335326 0.060370165 2.60E-05 4.584811344 0.204525933 ESS(ph)PKKEETVASK ddPTM_HeLa_A486_30min_R1 1 ESSPKKEETVASK 13 2 J3QQY0 J3QQY0 MSL1 1 0 ES(0.44)S(0.56)PKKEETVASK 88.283 0.00078756 286170000 102420 97716 30139 114670 72963 201570 244150 209940 91323 309850 TRUE FALSE FALSE 95240.8869 89972.62828 41809.62795 266957.5551 63811.30019 176702.3428 183061.0876 162141.245 99238.95117 232261.5432 0.410058788 0.387376348 0.18001098 1.149383369 0.274738983 0.760790359 0.788167878 0.698097682 0.427272418 1 17.82539077 -5.222818656 24.99984072 0.70071476 0.331971443 0.361787948 0.243027747 626.9291376 405820.9799 0.062550605 0.10833811 5.99E-06 5.222818656 -0.368743317 ESS(ph)PLPK ddPTM_HeLa_A485_30min_R1 2 ESSPLPK 7 0 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 ES(0.003)S(0.997)PLPK;ES(0.064)S(0.936)PLPK ; 131.06 0.001666 1098800000 2732800 2299500 1627620 3564300 2706200 2673000 3807000 3141100 2111520 4550500 TRUE FALSE FALSE 3340701.932 2568406.522 2229744.369 3759008.684 2436761.226 2812954.147 2993603.35 2370740.3 2535282.696 3416144.096 0.977915989 0.751843731 0.652707938 1.100365962 0.713307506 0.823429594 0.87631062 0.693981353 0.742147469 1 21.7039374 ESS(ph)PLPK ddPTM_HeLa_A486_30min_R1 4 ESSPLPK 7 0 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 ES(0.003)S(0.997)PLPK;ES(0.008)S(0.992)PLPK;ES(0.133)S(0.867)PLPK;ES(0.073)S(0.927)PLPK ;;; 131.06 0.001666 2672710000 7168100 6903800 3234460 2684600 5357000 7391600 8532700 7767400 5279100 9676900 TRUE FALSE FALSE 6665653.206 6356717.745 4486929.534 6249884.472 4685075.108 6479699.544 6397728.21 5998932.581 5736696.639 7253741.254 0.918926244 0.876336434 0.61856763 0.861608411 0.645883958 0.893290692 0.881990133 0.827012209 0.79086039 1 22.79029385 ESS(ph)PLS(ph)SRK ddPTM_HeLa_A485_30min_R1 1 ESSPLSSRK 9 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 2 0 ES(0.001)S(0.997)PLS(0.6)S(0.402)RK 76.282 0.0050394 21233000000 8136900 13425000 13679000 5421300 13746000 11321000 12302000 13795000 11580000 6310900 TRUE FALSE FALSE 9946925.333 14994936.97 18739431.33 5717451.892 12377399.97 11913750.05 9673577.202 10411754.62 13903999.78 4737708.774 2.099522324 3.165018722 3.955378481 1.206796822 2.612528665 2.51466492 2.041826052 2.197635 2.934751891 1 22.17575809 -10.34671483 0.242545753 6.87E-19 2.787324989 0.285325271 0.706520902 28.15870078 1.362533003 21.24894118 1.287525172 4.50E-11 10.34671483 2.787324989 ESS(ph)PLS(ph)SRK ddPTM_HeLa_A486_30min_R1 2 ESSPLSSRK 9 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 2 0 ESS(1)PLS(0.625)S(0.375)RK;ESS(1)PLS(0.559)S(0.441)RK ; 88.392 0.0018014 23834800000 9808001 13106911 11396908 63286.7 14296867 9772397 8115047 10502794 12313195 4366623 TRUE FALSE FALSE 9120510.778 12068271.64 15810096 147334.6359 12503620.63 8566778.017 6084576.408 8111537.081 13380512.66 3273192.179 2.786426913 3.687003689 4.830176517 0.045012522 3.820008097 2.617254823 1.858912058 2.478173183 4.087909272 1 21.64226688 -5.201633358 24.99999927 2.395647921 3.759781029 0.236603688 1.216896201 395.2922491 165238.2692 0.318912253 0.552372098 6.29E-06 5.201633358 1.364133109 ESS(ph)PLSSR ddPTM_HeLa_A485_30min_R1 2 ESSPLSSR 8 0 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 ES(0.04)S(0.96)PLSSR;ES(0.023)S(0.977)PLSSR ; 174.8 4.10E-09 0 780000 956220 957170 805990 1100000 887980 1023490 974910 871010 1088790 TRUE FALSE FALSE 953508.309 1068041.611 1311267.014 850019.1928 990480.1377 934473.2597 804813.0004 735811.7939 1045813.718 817374.6907 1.166549833 1.30667321 1.604242252 1.039938235 1.211782245 1.143261799 0.984631662 0.900213577 1.279478958 1 19.64063805 -5.296712452 24.98995749 1.079908661 1.353907028 0.437339096 0.145115525 551.6391277 390819.2703 0.041525 0.06159416 5.05E-06 5.296712452 0.273998367 ESS(ph)PLYS(ph)PTFSDSTSAVK ddPTM_HeLa_A485_30min_R1 6 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 ES(0.064)S(0.936)PLYS(0.995)PT(0.005)FSDSTSAVK;ES(0.099)S(0.901)PLYS(0.499)PT(0.499)FS(0.002)DSTSAVK;ES(0.051)S(0.949)PLYS(0.992)PT(0.008)FSDSTSAVK;ES(0.08)S(0.92)PLYS(0.97)PT(0.03)FSDSTSAVK;ES(0.009)S(0.991)PLYS(1)PTFSDSTSAVK;ES(0.399)S(0.601)PLYS(0.999)PT(0.001)FSDSTSAVK ;;;;; 298.93 1.85E-78 5892810000 4526790 4093470 3028070 5907580 5303860 4657170 7135200 6627060 3906910 8025790 TRUE FALSE FALSE 5533758.818 4572165.708 4148279.102 6230296.137 4775789.075 4901012.22 5610706.231 5001763.144 4690991.001 6025108.257 0.918449691 0.758852043 0.688498683 1.034055468 0.792647845 0.813431396 0.931220817 0.830153241 0.778573729 1 22.52255573 -10.77198851 2.543363861 1.042628932 0.837838477 0.209812598 0.094058515 43588164.93 31278758.42 11588473.77 0.023374297 1.69E-11 10.77198851 -0.204790456 ESS(ph)PLYS(ph)PTFSDSTSAVK ddPTM_HeLa_A486_30min_R1 4 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 ES(0.063)S(0.937)PLYS(1)PTFSDSTSAVK;ES(0.066)S(0.934)PLYS(0.995)PT(0.005)FSDSTSAVK;ES(0.071)S(0.929)PLYS(0.999)PT(0.001)FSDSTSAVK;ES(0.01)S(0.99)PLYS(1)PTFSDSTSAVK ;;; 334.51 2.56E-101 4679840000 5717410 5649870 2988490 2485820 5447120 5975320 7340230 7020870 4870980 7441430 TRUE FALSE FALSE 5316649.084 5202153.725 4145713.363 5787114.586 4763891.417 5238145.771 5503626.817 5422371.166 5293200.468 5578047.492 0.953138009 0.932611946 0.743219445 1.037480336 0.854042821 0.939064391 0.986658293 0.972091251 0.948934278 1 22.41132879 -6.526694851 6.344330881 0.973369037 0.903330128 0.187309321 0.071338312 0.263566587 48.31626802 0.026180351 0.021092093 2.97E-07 6.526694851 -0.070038909 ESS(ph)PLYSPTFSDSTSAVK ddPTM_HeLa_A485_30min_R1 5 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.13)S(0.87)PLYSPTFSDSTSAVK;ES(0.067)S(0.933)PLYSPTFSDSTSAVK;ES(0.034)S(0.966)PLYSPTFSDSTSAVK;ES(0.067)S(0.933)PLYSPTFSDSTSAVK;ES(0.001)S(0.999)PLYSPTFSDSTSAVK ;;;; 384.27 3.04E-145 25003790000 12568050 11238060 8385620 15379500 15671720 13462150 19065780 18749890 11478860 21310950 TRUE FALSE FALSE 15363769.36 12552253.36 11487809.79 16219643.14 14111388.53 14167007.36 14992220.35 14151450.08 13782561.91 15998522.36 0.960324273 0.784588293 0.718054426 1.013821325 0.882043242 0.88551974 0.937100315 0.88454732 0.86148968 1 23.93143533 -5.261940527 24.99999993 0.915948976 0.817348932 0.284145244 0.073819364 60.04000003 2995199.308 0.02029504 0.032306396 5.47E-06 5.261940527 -0.098600043 ESS(ph)PLYSPTFSDSTSAVK ddPTM_HeLa_A486_30min_R1 5 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.14)S(0.86)PLYSPTFSDSTSAVK;ESS(1)PLYSPTFSDSTSAVK;ES(0.023)S(0.977)PLYSPTFSDSTSAVK;ES(0.001)S(0.999)PLYSPTFSDSTSAVK;ES(0.028)S(0.972)PLYSPTFSDSTSAVK ;;;; 409.05 4.48E-163 25331300000 5441390 5518370 3030660 2304090 5474770 5692490 7327490 7017680 4456190 6728890 TRUE FALSE FALSE 5059976.66 5081074.264 4204212.716 5364037.962 4788073.296 4990208.461 5494074.5 5419907.459 4842456.137 5043932.146 1.003180954 1.007363723 0.833518888 1.063463545 0.949273931 0.989348848 1.089244332 1.074540121 0.960055765 1 22.26611744 -6.540679984 23.08755526 1.037475353 0.970668597 0.157236812 0.064602075 168.6239718 218694.5717 0.024296931 0.018826173 2.88E-07 6.540679984 -0.066806757 ESS(ph)RDT(ph)SPVR ddPTM_HeLa_A485_30min_R1 1 ESSRDTSPVR 10 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 ES(0.449)S(0.539)RDT(0.551)S(0.461)PVR 58.885 0.02788 516320000 561750 595500 468240 533910 483550 537910 591620 603880 439710 606170 TRUE FALSE FALSE 686709.3495 665138.5448 641461.4611 563076.1514 435406.0642 566074.1358 465215.5539 455777.4832 527955.7637 455062.9747 1.509042457 1.461640656 1.40961031 1.237358745 0.956803977 1.24394681 1.022310273 1.001570131 1.160181762 1 18.79570668 -5.364990003 2.26956446 1.070445059 1.476942751 0.818668237 0.083326238 0.1209154 1.216839864 0.024731047 0.042601336 4.32E-06 5.364990003 0.406497692 ESS(ph)RDT(ph)SPVR ddPTM_HeLa_A486_30min_R1 1 ESSRDTSPVR 10 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 ES(0.432)S(0.567)RDT(0.692)S(0.31)PVR 73.415 0.010254 499680000 540320 533790 268220 137840 347820 427730 432770 390740 397060 561320 TRUE FALSE FALSE 502446.3582 491490.5364 372081.9672 320898.486 304193.1723 374961.0214 324486.3686 301777.0318 431477.4805 420761.8184 1.194134867 1.168096806 0.884305445 0.76266066 0.722958118 0.891147925 0.77118777 0.717215818 1.025467287 1 18.68264427 -4.791561852 3.801894 0.823873337 1.192105979 0.630454387 0.102226165 0.118154237 3.598706913 0.026099896 0.066354342 1.62E-05 4.791561852 0.368232643 ESS(ph)RDTS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 ESSRDTSPVR 10 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 ES(0.022)S(0.978)RDT(0.001)S(1)PVR;ES(0.231)S(0.769)RDT(0.013)S(0.987)PVR;ES(0.42)S(0.571)RDT(0.127)S(0.881)PVR ;; 156.02 7.76E-06 1423730000 2609430 2626770 1342340 659357 1682360 2143440 2149110 1928110 1921890 2854450 TRUE FALSE FALSE 2426522.432 2418615.179 1862129.997 1535016.418 1471342.721 1879004.166 1611379.947 1489121.443 2088480.973 2139677.141 1.134060081 1.130364546 0.870285503 0.717405626 0.687647072 0.878171819 0.753094902 0.69595614 0.976072947 1 21.02896169 -4.820142615 3.792898633 0.797304614 1.139156116 0.580654222 0.105254365 0.131920126 3.788611271 0.026975646 0.066153407 1.51E-05 4.820142615 0.341851503 ESSAMAS(ph)PLPR ddPTM_HeLa_A486_30min_R1 1 ESSAMASPLPR 11 0 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 ES(0.022)S(0.149)AMAS(0.829)PLPR 72.846 0.011769 107450000 122430 143760 281890 32759 246480 124940 119300 131790 118840 129570 TRUE FALSE FALSE 113848.2892 132367.934 391045.3573 76264.60755 215564.1801 109526.1731 89449.87817 101784.294 129141.1469 97124.82864 1.172185226 1.362864016 4.026214128 0.78522257 2.219454933 1.127684595 0.920978492 1.047973987 1.329640924 1 16.56755253 -6.279422488 19.66888025 1.077984586 1.937339781 0.201382712 0.823606536 87.36931191 95556.85031 0.289246973 0.256295456 5.26E-07 6.279422488 0.859355195 ESSANNS(ph)VSPSESLR ddPTM_HeLa_A485_30min_R1 1 ESSANNSVSPSESLR 15 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ESSANNS(0.803)VS(0.197)PSESLR 244.54 2.31E-41 5080400000 559420 781130 698620 559780 1015500 661310 844460 1063500 690440 836080 TRUE FALSE FALSE 683861.049 872476.3586 957068.61 590359.364 914393.2544 695935.169 664034.2224 802674.9575 829004.9749 627660.6429 1.089539478 1.390044714 1.52481858 0.940570945 1.456827451 1.108776178 1.057951028 1.278835891 1.320785339 1 19.25962522 -5.247988454 24.9955274 1.183067948 1.340325267 0.15415883 0.177757529 1602.924505 2978669.955 0.047279504 0.081272549 5.65E-06 5.247988454 0.157257318 ESSANNSVS(ph)PSESLR ddPTM_HeLa_A485_30min_R1 4 ESSANNSVSPSESLR 15 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ESSANNS(0.005)VS(0.995)PSESLR;ESSANNS(0.024)VS(0.976)PSESLR;ESSANNS(0.065)VS(0.934)PS(0.001)ESLR;ESSANNS(0.01)VS(0.953)PS(0.037)ESLR ;;; 403.54 6.24E-189 5135270000 638348 824424 836460 810840 1062917 880667 1035712 1160324 809884 1090390 TRUE FALSE FALSE 780346.3103 920833.2153 1145901.362 855134.136 957089.2514 926777.3624 814423.6702 875752.7197 972420.2901 818575.8401 0.95329751 1.124921076 1.399871955 1.044660854 1.169212679 1.132182648 0.994927568 1.069849215 1.187941596 1 19.64275656 -6.548913382 24.01655604 1.068222395 1.147337091 0.084881559 0.117179523 382.233919 352599.8925 0.045578326 0.035306093 2.83E-07 6.548913382 0.079114695 ESSANNSVS(ph)PSESLR ddPTM_HeLa_A486_30min_R1 4 ESSANNSVSPSESLR 15 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ESSANNS(0.002)VS(0.997)PSESLR;ESSANNS(0.033)VS(0.967)PSESLR;ESSANNS(0.043)VS(0.944)PS(0.014)ESLR;ESSANNSVS(1)PSESLR ;;; 306.07 4.76E-68 9305180000 1735289 2021410 1769869 655883 2529780 1870440 2239620 2261040 1745847 2183680 TRUE FALSE FALSE 1613654.202 1861226.11 2455209.676 1526928.77 2212471.403 1639684.13 1679243.388 1746250.55 1897178.424 1636872.315 0.985815563 1.13706249 1.499939643 0.932833158 1.351645686 1.001717798 1.025885387 1.066821483 1.159026521 1 20.64251036 -6.313400667 24.99617698 1.053316261 1.182874275 0.14586302 0.158139261 708.3345436 340744.7954 0.054506923 0.048070619 4.86E-07 6.313400667 0.129558014 ESSATS(ph)SQRS(ph)SPYGTLKPEEMSGPGLAEPK ddPTM_HeLa_A485_30min_R1 1 ESSATSSQRSSPYGTLKPEEMSGPGLAEPK 30 2 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 2 0 ES(0.083)S(0.089)AT(0.1)S(0.412)S(0.41)QRS(0.47)S(0.435)PYGTLKPEEMSGPGLAEPK 77.044 0.0013422 142730000 60542 43855 37233 87827 70552 70058 112300 91485 56463 130130 TRUE FALSE FALSE 74009.35903 48983.46076 51007.03609 92624.76662 63527.59516 73726.12855 88306.18759 69048.16031 67794.60619 97690.98587 0.757586367 0.501412288 0.522126332 0.948140361 0.650291269 0.754687118 0.903933836 0.706801756 0.693969926 1 16.57593783 -14 0.041347537 2.247137531 5.93E-09 0.32342027 0.131048579 955.6906372 2.94143946 146.8032132 42.33366805 1.00E-14 14 -2.247137525 ESSATSS(ph)QRS(ph)SPYGTLKPEEMSGPGLAEPK ddPTM_HeLa_A486_30min_R1 1 ESSATSSQRSSPYGTLKPEEMSGPGLAEPK 30 2 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 2 0 ES(0.124)S(0.136)AT(0.135)S(0.135)S(0.422)QRS(0.547)S(0.5)PYGTLKPEEMSGPGLAEPK 96.55 0.00031618 76951000 29196 33928 19221 22780 37499 45530 57020 60669 25212 59685 TRUE FALSE FALSE 27149.51117 31239.42172 26663.88596 53032.99124 32795.52576 39912.97152 42752.9929 46855.99309 27397.39646 44739.48752 0.606835542 0.698251667 0.595981032 1.185373239 0.733033112 0.892119551 0.955598628 1.047307327 0.61237618 1 15.44926111 -5.219223791 24.99990292 0.912728578 0.64014552 0.422795223 0.152073638 472.7130715 279938.1462 0.039227987 0.067944219 6.04E-06 5.219223791 -0.272583058 ESSEPTGS(ph)PAPVIQHSSATAPSNGLSVR ddPTM_HeLa_A485_30min_R1 1 ESSEPTGSPAPVIQHSSATAPSNGLSVR 28 0 P17544;P17544-2;P17544-4;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 ESSEPT(0.007)GS(0.993)PAPVIQHSSATAPSNGLSVR 271.09 4.83E-77 711580000 65117 174110 227880 25430 205320 87835 100040 120330 139340 49402 TRUE FALSE FALSE 79602.052 194470.6499 312182.2949 26819.17651 184877.6199 92433.90478 78665.63675 90818.87883 167304.2599 37086.99058 2.14636051 5.243635219 8.417568803 0.723142431 4.984972277 2.492353878 2.121111353 2.448806911 4.51113065 1 15.17862558 -5.278177129 24.99993295 2.745491672 5.266633422 0.293049498 1.883517419 1040.806075 1554572.239 0.523914909 0.779429148 5.27E-06 5.278177129 2.52114175 ESSEPTGS(ph)PAPVIQHSSATAPSNGLSVR ddPTM_HeLa_A486_30min_R1 2 ESSEPTGSPAPVIQHSSATAPSNGLSVR 28 0 P17544;P17544-2;P17544-4;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 ESSEPT(0.01)GS(0.99)PAPVIQHSSATAPSNGLSVR;ESSEPT(0.003)GS(0.997)PAPVIQHSSATAPSNGLSVR ; 278.33 2.93E-77 961620000 258990 353090 410240 21042 445510 197498 203893 218890 346470 99117 TRUE FALSE FALSE 240836.1384 325109.8625 569095.9146 48986.8394 389629.9816 173132.7048 152876.8148 169053.5253 376502.2986 74297.45806 3.241512492 4.375787153 7.659695627 0.659333989 5.244189933 2.330264175 2.057631833 2.275360823 5.067499056 1 16.18102523 -5.269577662 24.99952981 2.783762033 5.020677351 0.287110407 1.746461964 812.1472948 2494788.325 0.477870835 0.722725838 5.38E-06 5.269577662 2.236915318 ESSFEESNIEDPLIVTPDCQEKT(ph)SPK ddPTM_HeLa_A486_30min_R1 1 ESSFEESNIEDPLIVTPDCQEKTSPK 26 1 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 ESSFEESNIEDPLIVT(0.006)PDCQEKT(0.497)S(0.497)PK 69.201 0.013836 113440000 30158 37225 16879 32295 34988 43085 63609 57940 27949 70527 TRUE FALSE FALSE 28044.07994 34275.15543 23415.00084 75184.3921 30599.47879 37769.61076 47693.35541 44748.32682 30371.64182 52866.58015 0.530468963 0.648333131 0.442907424 1.422153502 0.578805716 0.714432646 0.902145652 0.846438841 0.574496057 1 15.69006838 ESSFEESNIEDPLIVTPDCQEKTS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ESSFEESNIEDPLIVTPDCQEKTSPK 26 1 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 ESSFEESNIEDPLIVTPDCQEKT(0.216)S(0.784)PK 133.94 2.12E-06 106080000 64735 60203 23291 87033 67572 86360 142000 126450 47448 148550 TRUE FALSE FALSE 60197.41079 55432.29502 32309.89895 202617.2224 59096.48968 75705.78124 106470.0981 97660.09538 51560.83084 111352.1131 0.540604117 0.497810894 0.290159729 1.819608239 0.530717272 0.679877365 0.956156961 0.877038546 0.463043129 1 16.76476941 ESSIIAPAPAEDVDT(ph)PPR ddPTM_HeLa_A485_30min_R1 3 ESSIIAPAPAEDVDTPPR 18 0 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR ;; 283.49 9.48E-69 1828910000 466240 529040 611580 551410 753610 556200 691750 613340 567420 769120 TRUE FALSE FALSE 569953.4795 590906.626 837828.892 581532.1321 678577.9423 585321.772 543951.9614 462917.4033 681295.9893 577392.5386 0.987116115 1.023405372 1.451055973 1.007169461 1.17524543 1.01373283 0.942083462 0.801737765 1.179952881 1 19.13919294 -6.419356858 4.159289219 0.965512665 1.133671754 0.1788082 0.150643356 0.37875983 11.30270888 0.05547262 0.047831528 3.81E-07 6.419356858 0.168159089 ESSIIAPAPAEDVDT(ph)PPR ddPTM_HeLa_A486_30min_R1 4 ESSIIAPAPAEDVDTPPR 18 0 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR ;;; 287.75 2.72E-69 2677890000 941679 1379940 1211740 434883 1696650 1299540 1418540 1439860 1307710 1289030 TRUE FALSE FALSE 875672.1649 1270588.529 1680958.18 1012429.602 1483840.336 1139215.968 1063606.288 1112035.31 1421063.356 966248.4978 0.906259794 1.314970767 1.739674818 1.047794231 1.535671558 1.179009303 1.100758543 1.150879212 1.470701749 1 19.88203474 ESSIIAPAPAEDVDT(ph)PPRKK ddPTM_HeLa_A485_30min_R1 1 ESSIIAPAPAEDVDTPPRKK 20 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 ESSIIAPAPAEDVDT(1)PPRKK 88.019 0.00067798 175780000 109950 177690 132870 71563 242620 350780 396520 701020 137300 129690 TRUE FALSE FALSE 134407.9982 198469.2998 182024.1422 75472.30548 218463.9009 369146.2984 311800.2627 529093.7458 164854.8506 97360.66977 1.380516368 2.038495629 1.86958597 0.775182686 2.243861936 3.791534089 3.202527915 5.434368386 1.693238666 1 16.57105147 -6.050540082 5.080287434 3.298523722 1.566657392 0.25447478 1.169011367 0.240687848 13.88131709 0.369831171 0.379613849 8.90E-07 6.050540082 -1.73186633 ESSPIPS(ph)PTSDRK ddPTM_HeLa_A485_30min_R1 2 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ESSPIPS(0.933)PT(0.029)S(0.037)DRK;ESSPIPS(0.992)PT(0.008)SDRK ; 134.81 7.40E-06 1535430000 750910 719340 530710 892630 817380 823870 1169030 1118910 680680 1276670 TRUE FALSE FALSE 917947.3389 803460.5556 727041.7137 941392.1166 735998.7772 867006.5593 919257.1904 844495.5681 817286.2324 958419.6644 0.957771812 0.838318104 0.758583886 0.982233725 0.767929545 0.904621004 0.959138491 0.88113339 0.852743597 1 19.87029798 -6.498309779 24.81739693 0.915995681 0.858309873 0.129391628 0.076090458 1544.178255 1559795.204 0.026159777 0.022956009 3.17E-07 6.498309779 -0.057685808 ESSPIPS(ph)PTSDRK ddPTM_HeLa_A486_30min_R1 2 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ESSPIPS(0.831)PT(0.085)S(0.085)DRK;ESSPIPS(0.914)PT(0.043)S(0.043)DRK ; 102.29 0.000365 1508570000 939110 858600 461940 359630 877820 964100 1063220 1042160 650190 1171010 TRUE FALSE FALSE 873283.2386 790561.409 640815.5392 837236.8147 767715.6303 845159.1443 797191.1104 804882.9182 706548.9927 877781.474 0.99487545 0.900635787 0.730039945 0.953810076 0.87460906 0.962835477 0.90818858 0.916951362 0.804925843 1 19.7435023 ESSPLYS(ph)PTFSDSTSAVK ddPTM_HeLa_A485_30min_R1 1 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESSPLYS(1)PTFSDSTSAVK 197.14 4.30E-25 283380000 238740 274300 328240 247400 330410 302610 335870 359470 269670 353980 TRUE FALSE FALSE 291846.8894 306376.9989 449669.6352 260914.8356 297513.2203 318454.1917 264108.6307 271309.4189 323790.2954 265739.3005 1.098245118 1.152923178 1.692145777 0.981845121 1.119568012 1.1983707 0.993863648 1.020960838 1.218450921 1 18.01965208 ESSPLYS(ph)PTFSDSTSAVK ddPTM_HeLa_A486_30min_R1 1 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESS(0.001)PLY(0.016)S(0.827)PT(0.134)FS(0.022)DSTSAVK 113.29 8.55E-05 793890000 124210 124580 64417 52417 123420 129620 150570 140830 107210 152280 TRUE FALSE FALSE 115503.5204 114707.8271 89360.98755 122029.425 107939.5128 113628.8023 112895.7934 108766.0833 116503.0491 114148.0968 1.011874255 1.004903544 0.782851314 1.069044762 0.945609395 0.995450695 0.989029135 0.952850607 1.020630675 1 16.80054728 ESSTESSQSAKPVSGQDTSGNT(ph)EGSPAAEK ddPTM_HeLa_A485_30min_R1 1 ESSTESSQSAKPVSGQDTSGNTEGSPAAEK 30 1 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 0 ESSTESSQSAKPVSGQDT(0.01)S(0.002)GNT(0.86)EGS(0.128)PAAEK 155.7 7.66E-10 561200000 125570 88303 29445 145190 76510 93568 123870 171960 71782 344600 TRUE FALSE FALSE 153502.6133 98629.26772 40337.93081 153121.3621 68892.39576 98467.0758 97404.16258 129786.5404 86187.98898 258697.5619 0.593367066 0.381253178 0.155926985 0.591893333 0.266304774 0.380626223 0.376517513 0.501692167 0.333161195 1 17.98090693 -10.48511749 2.826333955 1.021223491 0.394012981 0.660259415 0.129552644 16765099.48 18222176.05 2776593.056 0.032297911 3.27E-11 10.48511749 -0.627210511 ESSTSEGADQKMS(ph)S(ph)PEDDSDTKR ddPTM_HeLa_A485_30min_R1 2 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 2 0 ESSTSEGADQKMS(1)S(0.997)PEDDS(0.002)DT(0.002)KR;ESSTSEGADQKMS(0.995)S(0.991)PEDDS(0.012)DTKR ; 124.69 1.42E-05 1555750000 1061190 732890 422319 2513630 1178140 980530 2153060 1812280 718460 3254370 TRUE FALSE FALSE 1297248.054 818595.1102 578552.3723 2650943.242 1060840.245 1031869.035 1693041.142 1367815.488 862648.3319 2443115.451 0.530981069 0.335061984 0.236809264 1.085066709 0.434216174 0.422357869 0.692984501 0.559865269 0.35309356 1 21.22029061 -11.22689149 2.29157841 2.585789982 0.52110797 0.291635378 0.225867242 33716041.6 5820148.343 277297598.4 0.058769504 5.93E-12 11.22689149 -2.064682012 ESSTSEGADQKMS(ph)S(ph)PEDDSDTKR ddPTM_HeLa_A486_30min_R1 5 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 2 0 ESSTSEGADQKMS(0.999)S(0.924)PEDDS(0.076)DTKR;ESSTS(0.001)EGADQKMS(0.998)S(0.982)PEDDS(0.018)DTKR;ESSTSEGADQKMS(0.997)S(0.902)PEDDS(0.096)DT(0.004)KR;ES(0.02)S(0.021)T(0.022)S(0.022)EGADQKMS(0.916)S(0.997)PEDDSDTKR;ES(0.233)S(0.247)T(0.245)S(0.251)EGADQKMS(0.291)S(0.732)PEDDSDTKR ;;;; 175.07 2.39E-14 4881253000 5122010 3936203 1351337 5037726 3282202 5985950 9338010 7784110 3175458 12684310 TRUE FALSE FALSE 4762983.549 3624283.939 1874610.876 11728080.72 2870517.62 5247464.35 7001541.131 6011838.079 3450709.256 9508076.215 0.500940826 0.381179521 0.19715985 1.233486192 0.301903093 0.551895487 0.736378314 0.632287536 0.362924021 1 23.18072204 -14 0.240888416 3.498623319 0.508306936 0.188618398 0.277235196 302.5188949 3.018970022 371.9452337 0.433415715 1.00E-14 14 -2.990316383 ESSTSEGADQKMS(ph)SPEDDSDTKR ddPTM_HeLa_A485_30min_R1 1 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 ES(0.002)S(0.002)T(0.002)S(0.001)EGADQKMS(0.941)S(0.052)PEDDSDTKR 84.641 0.003541 59767000 78150 63104 41706 195510 85572 81420 142850 134240 61310 246730 TRUE FALSE FALSE 95534.19789 70483.46387 57134.78493 206190.2162 77052.15122 85683.0253 112328.9305 101317.4295 73614.35463 185224.7517 0.515774469 0.380529401 0.308461933 1.113189324 0.415992736 0.4625895 0.606446652 0.546997248 0.3974326 1 17.49891737 -10.84073753 2.474303299 1.188969882 0.531660244 0.307070486 0.212857111 24166090.39 14761279.18 27044608.62 0.057197644 1.44E-11 10.84073753 -0.657309639 ESSTSEGADQKMS(ph)SPEDDSDTKR ddPTM_HeLa_A486_30min_R1 3 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 ES(0.01)S(0.01)T(0.01)S(0.009)EGADQKMS(0.93)S(0.031)PEDDSDTKR;ESSTSEGADQKMS(0.946)S(0.054)PEDDSDTKR;ESSTSEGADQKMS(0.995)S(0.005)PEDDSDTKR ;; 193.06 1.10E-21 2464712000 903650 661563 258526 703540 664184 1076770 1552180 1294960 544294 1996670 TRUE FALSE FALSE 840308.8015 609138.3385 358634.1908 1637876.675 580875.8495 943929.0652 1163808.147 1000125.877 591473.8422 1496690.836 0.561444476 0.40699009 0.239618084 1.094331999 0.388106772 0.630677387 0.777587541 0.668224761 0.395187722 1 20.51334481 -14 0.141677681 2.345319813 0.442171403 0.224002839 0.232120016 216.8433736 1.870381528 83.73288723 1.382816628 1.00E-14 14 -1.90314841 ESSVK(ac)TVR ddPTM_HeLa_A485_30min_R1 2 ESSVKTVR 8 1 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ; ESSVK(1)TVR;ESSVK(1)TVR 153.08 0.00092986 208435000 161854 214382 217984 174148 286360 180019 243620 228200 191795 278360 FALSE TRUE FALSE 197857.8639 239452.11 298625.3527 183661.2643 257848.9929 189444.5165 191568.5968 172233.5922 230286.4973 208969.9748 0.946824366 1.145868492 1.429034735 0.878888292 1.233904503 0.906563331 0.916727855 0.824202579 1.102007585 1 17.67293614 -6.275272347 24.70384558 0.936839643 1.130964039 0.242009466 0.155689616 939.3196504 1677494.714 0.05386972 0.047753518 5.31E-07 6.275272347 0.194124396 ESSVK(ac)TVR ddPTM_HeLa_A486_30min_R1 2 ESSVKTVR 8 1 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ; ESSVK(1)TVR;ESSVK(1)TVR 153.08 0.00092925 181076000 173504 197317 185669 54224 234690 188409 189878 200550 188481 188181 FALSE TRUE FALSE 161342.2656 181680.8823 257565.0092 126236.2123 205252.9918 165165.0132 142368.5161 154889.143 204818.6848 141059.2527 1.143790729 1.287975647 1.825934876 0.894916213 1.455083504 1.170891026 1.009281655 1.098043127 1.452004607 1 17.10594178 -5.286685506 24.95068508 1.165581694 1.406108209 0.208373965 0.235492294 1243.125752 1228575.36 0.065731423 0.097539799 5.17E-06 5.286685506 0.240526515 ESTESSNTT(ph)IEDEDVK ddPTM_HeLa_A485_30min_R1 1 ESTESSNTTIEDEDVK 16 0 H0Y9J2;E9PBG7;E9PF82;Q13557-11;Q13557;Q13557-6;Q13557-10;Q13557-8;Q13557-12;D6R938 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 ESTESSNT(0.01)T(0.99)IEDEDVK 277.69 6.78E-58 513080000 562870 422050 336080 938690 549310 492590 682880 533730 485190 1190300 TRUE FALSE FALSE 688078.4896 471405.0762 460409.9775 989968.2578 494618.7677 518381.2507 536977.1094 402831.8806 582563.1826 893580.1158 0.770024397 0.527546515 0.515241968 1.107867376 0.553524814 0.580117263 0.600927773 0.450806675 0.651942867 1 19.76923756 -8.058839776 22.12263671 1.000000002 0.634567076 0.272150356 0.176772696 8988.463227 3379486.654 0.173319151 0.044750812 8.73E-09 8.058839776 -0.365432926 ESTESSNTT(ph)IEDEDVK ddPTM_HeLa_A486_30min_R1 2 ESTESSNTTIEDEDVK 16 0 H0Y9J2;E9PBG7;E9PF82;Q13557-11;Q13557;Q13557-6;Q13557-10;Q13557-8;Q13557-12;D6R938 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 ESTESSNT(0.049)T(0.951)IEDEDVK;ESTESSNT(0.312)T(0.688)IEDEDVK ; 252.47 9.37E-50 961420000 1535970 1535500 790880 810640 1177990 1805260 2257500 1884300 1163340 2810500 TRUE FALSE FALSE 1428306.435 1413821.388 1097129.917 1887210.887 1030235.51 1582545.376 1692649.623 1455286.024 1264179.248 2106732.507 0.677972372 0.671096773 0.520773242 0.895799956 0.48902056 0.751184771 0.803447812 0.690778739 0.600066332 1 21.00657572 -11.31787835 2.305057911 2.729079167 0.68007422 0.408375469 0.116316172 3648232.135 633917.5255 32801015 0.027651999 4.81E-12 11.31787835 -2.049004947 ESTESSNTT(ph)IEDEDVKAR ddPTM_HeLa_A486_30min_R1 2 ESTESSNTTIEDEDVKAR 18 1 H0Y9J2;E9PBG7;E9PF82;Q13557-11;Q13557;Q13557-6;Q13557-10;Q13557-8;Q13557-12;D6R938 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 ESTESSNT(0.007)T(0.993)IEDEDVKAR;ESTES(0.001)S(0.007)NT(0.035)T(0.958)IEDEDVKAR ; 187.86 6.84E-18 1437960000 381540 362910 270550 272050 543020 422090 601850 591140 251760 579960 TRUE FALSE FALSE 354796.0163 334151.6899 375314.2056 633346.1486 474909.3681 370016.8273 451260.7643 456550.3265 273582.7595 434734.2411 0.816121627 0.768634394 0.863318713 1.456858211 1.092413073 0.851133388 1.038015232 1.050182579 0.629310355 1 18.72977421 -10.07469906 13.36065563 0.999999999 0.96525052 0.0009808 0.216222693 0 0 0.219709145 0.053287295 8.42E-11 10.07469906 -0.034749479 ESTLHLVLR ddPTM_HeLa_A485_30min_R1 2 ESTLHLVLR 9 0 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;M0R2S1;M0R1M6 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 0 0 ; ; 141.88 0.00013897 135048000 115157 155293 151926 128833 195000 161210 182139 175712 173440 240470 FALSE FALSE TRUE 140773.2774 173453.1655 208129.7496 135870.8206 175585.1153 169650.7063 143223.5147 132618.3565 208247.8171 180525.2545 0.779798249 0.960824932 1.152912096 0.752641623 0.972634637 0.939761624 0.793371072 0.734624952 1.153566118 1 17.46184115 -2.917900746 14.33071241 0.917422543 0.446398167 0 0.147772208 0 0 0.032891269 0 0.00120809 2.917900746 -0.471024376 ESTLHLVLR ddPTM_HeLa_A486_30min_R1 2 ESTLHLVLR 9 0 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;M0R2S1;M0R1M6 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 0 0 ; ; 178.94 1.79E-08 164186000 208561 284210 283020 17519.2 334980 277000 280270 257390 315070 205486 FALSE FALSE TRUE 193941.9509 261688.1645 392612.9235 40785.58297 292963.6848 242826.5563 210143.4816 198787.9158 342380.5213 154030.9681 1.259110121 1.698932155 2.548922002 0.264788201 1.901979118 1.576478804 1.364293714 1.290571099 2.222803151 1 17.23286091 ESTPGDS(ph)PSTVNK ddPTM_HeLa_A485_30min_R1 2 ESTPGDSPSTVNK 13 0 Q5T6F2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 ESTPGDS(1)PSTVNK;ESTPGDS(0.991)PS(0.008)TVNK ; 232.22 2.79E-31 240100000 552430 456900 398750 794880 743380 544830 742950 709770 521710 1080610 TRUE FALSE FALSE 675316.1476 510330.4805 546264.2184 838302.2817 669366.477 573356.4563 584212.6632 535697.7946 626412.4116 811233.8142 0.83245562 0.629079399 0.673374567 1.033367036 0.825121519 0.706770904 0.720153244 0.66034944 0.772172462 1 19.62975826 -11.27868515 2.095606451 1.924926058 0.759022011 0.293137472 0.111084459 9459493.625 1299058.804 41447457.55 0.029778253 5.26E-12 11.27868515 -1.165904046 ESTPSEEPS(ph)PPHNSK ddPTM_HeLa_A485_30min_R1 1 ESTPSEEPSPPHNSK 15 0 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 ESTPSEEPS(1)PPHNSK 106.67 0.00021345 284100000 98848 164860 159470 52817 218800 126310 184970 171900 157070 127490 TRUE FALSE FALSE 120836.3966 184138.9429 218464.5891 55702.25897 197015.5037 132923.3963 145449.6484 129741.2555 188592.5083 95709.08928 1.26253836 1.923944155 2.282589781 0.581995497 2.058482692 1.388827302 1.519705699 1.35557925 1.970476469 1 16.54636832 -10.43674957 2.963980391 0.987341974 1.592457118 0.127113804 0.466796884 56923142.29 66285822.73 6016462.581 0.111884888 3.66E-11 10.43674957 0.605115144 ESTQLS(ph)PADLTEGKPTDPSK ddPTM_HeLa_A485_30min_R1 4 ESTQLSPADLTEGKPTDPSK 20 1 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 ES(0.004)T(0.005)QLS(0.991)PADLT(0.001)EGKPTDPSK;EST(0.001)QLS(0.999)PADLTEGKPTDPSK;EST(0.004)QLS(0.985)PADLT(0.011)EGKPTDPSK;ESTQLS(1)PADLTEGKPTDPSK ;;; 195.01 3.99E-20 7002700000 8663680 4839560 3347320 11822600 5548900 7083780 9762160 7621830 4831600 14473600 TRUE FALSE FALSE 10590885.73 5405504.443 4585632.962 12468438.7 4996432.033 7454675.767 7676394.766 5752564.242 5801257.802 10865597.89 0.974717253 0.497487989 0.422032272 1.147515197 0.459839586 0.686080586 0.706486182 0.529429149 0.533910592 1 23.37326423 -10.14808546 4.911811279 1.000022463 0.656510805 0.17142851 0.222674905 5.28E-05 9.16E-06 0.207830528 0.050403014 7.11E-11 10.14808546 -0.343511658 ESTQLS(ph)PADLTEGKPTDPSK ddPTM_HeLa_A486_30min_R1 3 ESTQLSPADLTEGKPTDPSK 20 1 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 EST(0.001)QLS(0.996)PADLT(0.003)EGKPTDPSK;EST(0.001)QLS(0.999)PADLTEGKPTDPSK;ESTQLS(0.999)PADLT(0.001)EGKPTDPSK ;; 193.19 7.74E-20 5071500000 4200130 4435530 1720100 1875950 2914180 5392900 5763500 4830400 3710600 7394700 TRUE FALSE FALSE 3905722.576 4084042.449 2386168.786 4367306.405 2548656.371 4727578.829 4321411.34 3730623.367 4032237.796 5543018.989 0.704620097 0.736790268 0.430481799 0.787893098 0.459795713 0.852888803 0.779613303 0.673030956 0.727444341 1 22.40224052 -6.288020924 24.96935103 0.784473529 0.628550407 0.313099285 0.133202709 1056.769098 992671.6329 0.04514933 0.03982879 5.15E-07 6.288020924 -0.155923122 ESTQLS(ph)PADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK ddPTM_HeLa_A486_30min_R1 1 ESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK 47 2 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 ES(0.002)T(0.009)QLS(0.971)PADLT(0.017)EGKPT(0.001)DPSKLESPSFTGTGDTEIAHATEDLENNGSK 211.7 7.47E-34 1268600000 156000 164390 65578 69947 148270 235950 322290 274090 141990 294050 TRUE FALSE FALSE 145065.2056 151363.1377 90971.55784 162840.1509 129672.594 206840.888 241649.6332 211685.6903 154297.8075 220417.9661 0.658136939 0.68670962 0.412722971 0.738778938 0.588303197 0.938403033 1.096324576 0.960383104 0.700023733 1 17.7498823 -6.265508285 23.30488153 0.946381985 0.61623146 0.632953287 0.122575111 90.49355026 518303.5659 0.042857034 0.039230901 5.43E-07 6.265508285 -0.330150525 ESTQLSPADLTEGKPTDPSKLES(ph)PSFTGTGDTEIAHATEDLENNGSK ddPTM_HeLa_A485_30min_R1 1 ESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSK 47 2 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 ES(0.001)T(0.001)QLS(0.315)PADLT(0.011)EGKPT(0.067)DPS(0.067)KLES(0.523)PS(0.011)FT(0.002)GT(0.002)GDTEIAHATEDLENNGSK 216.99 4.34E-43 1703900000 172870 87202 56732 296180 164970 148010 298110 250280 119430 448750 TRUE FALSE FALSE 211324.3351 97399.51534 77719.52762 312359.5634 148545.0076 155759.5747 234416.3632 188898.4376 143398.5055 336884.8836 0.627289455 0.289118094 0.230700549 0.927199701 0.440936993 0.46235252 0.695835208 0.560721026 0.425660255 1 18.36189617 -14 0.243286388 3.775355174 0.471646147 0.356766408 0.192255512 199.2494947 1.986023543 274.4130106 0.300400694 1.00E-14 14 -3.303709027 ESTSS(ph)KSPPR ddPTM_HeLa_A485_30min_R1 2 ESTSSKSPPR 10 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 ESTS(0.004)S(0.979)KS(0.016)PPR;ES(0.003)T(0.01)S(0.039)S(0.527)KS(0.422)PPR ; 200.27 1.28E-12 3564000000 570790 672200 525810 679980 789350 759100 981450 988880 635370 974800 TRUE FALSE FALSE 697760.2663 750807.9426 720328.9998 717125.5856 710759.5424 798845.3022 771755.1898 746355.6295 762882.931 731800.2999 0.953484532 1.025973811 0.984324549 0.979947105 0.971247952 1.091616528 1.054598078 1.019889756 1.042474198 1 19.48109048 -6.238480515 24.96171922 1.043763975 0.985287736 0.524001293 0.027906165 641.1847694 697120.1741 0.009148481 0.009142945 5.77E-07 6.238480515 -0.058476239 ESTSSKS(ph)PPR ddPTM_HeLa_A485_30min_R1 9 ESTSSKSPPR 10 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 ESTS(0.001)S(0.044)KS(0.955)PPR;ES(0.001)T(0.001)S(0.001)S(0.048)KS(0.949)PPR;EST(0.001)S(0.004)S(0.024)KS(0.971)PPR;ESTSS(0.004)KS(0.996)PPR;ESTS(0.001)S(0.004)KS(0.995)PPR;ES(0.005)T(0.004)S(0.005)S(0.124)KS(0.861)PPR;ESTSS(0.067)KS(0.933)PPR;ESTSS(0.006)KS(0.994)PPR;ESTSS(0.004)KS(0.996)PPR ;;;;;;;; 236.57 1.19E-19 62250010000 3973530 4246340 3292830 5039620 5040750 4995750 6517460 6421290 4196290 7012460 TRUE FALSE FALSE 4857428.04 4742912.525 4510984.843 5314921.68 4538875.231 5257319.745 5124951.428 4846458.559 5038446.912 5264382.777 0.922696591 0.900943705 0.856887699 1.009600157 0.862185639 0.998658336 0.973514208 0.920612874 0.957082174 1 22.32783296 -5.621870831 1.019054555 0.960999686 0.898762052 0.222319484 0.047047895 0.898440708 1.952733287 0.019909899 0.036407688 2.39E-06 5.621870831 -0.062237634 ESTSSKS(ph)PPR ddPTM_HeLa_A486_30min_R1 10 ESTSSKSPPR 10 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 ESTSS(0.057)KS(0.942)PPR;ES(0.004)T(0.003)S(0.01)S(0.04)KS(0.944)PPR;ESTSS(0.003)KS(0.997)PPR;ESTSS(0.001)KS(0.999)PPR;ESTS(0.001)S(0.049)KS(0.948)PPR;EST(0.003)S(0.003)S(0.063)KS(0.932)PPR;ESTS(0.002)S(0.041)KS(0.957)PPR;ESTSS(0.006)KS(0.993)PPR;EST(0.001)S(0.001)S(0.037)KS(0.961)PPR;EST(0.001)S(0.005)S(0.024)KS(0.97)PPR ;;;;;;;;; 132.79 3.11E-05 60417130000 5847420 4953790 3599520 2449744 5332250 6277320 7286810 6416700 5097480 7534350 TRUE FALSE FALSE 5437546.054 4561233.639 4993350.542 5703127.835 4663429.484 5502888.082 5463573.066 4955757.486 5539333.671 5647699.72 0.962789511 0.807626798 0.884138816 1.009814282 0.825721925 0.974359182 0.967397938 0.877482467 0.980812356 1 22.42923195 -7.779940845 0.14914771 1.049282672 0.845060082 0.172759632 0.063663324 9.731045736 1.282578317 0.830044369 0.672261201 1.66E-08 7.779940845 -0.204222589 ESTSSKS(ph)PPRK ddPTM_HeLa_A485_30min_R1 4 ESTSSKSPPRK 11 2 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 ES(0.009)T(0.04)S(0.167)S(0.167)KS(0.617)PPRK;ES(0.001)T(0.031)S(0.133)S(0.133)KS(0.703)PPRK;ES(0.002)T(0.021)S(0.062)S(0.062)KS(0.854)PPRK;ESTSS(0.002)KS(0.998)PPRK ;;; 147.56 3.59E-07 3894690000 1610136 1249783 576589 2441980 891210 1700580 1950480 2349210 1465191 3105780 TRUE FALSE FALSE 1968305.198 1395934.25 789893.265 2575379.184 802478.0032 1789619.739 1533744.014 1773062.564 1759241.394 2331566.204 0.844198717 0.598710964 0.338782259 1.104570473 0.344179806 0.767561194 0.657817055 0.760459884 0.754532036 1 21.15286796 -8.358622626 0.678247056 1.00441024 0.650717004 0.180206127 0.212701902 2.160795623 1.912291216 0.219761203 0.079112272 4.38E-09 8.358622626 -0.353693237 ESTSSKS(ph)PPRK ddPTM_HeLa_A486_30min_R1 1 ESTSSKSPPRK 11 2 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 ESTS(0.001)S(0.023)KS(0.976)PPRK 125.29 2.77E-05 1356500000 419160 158890 224750 216230 205850 679440 426400 325910 408310 560170 TRUE FALSE FALSE 389779.0485 146298.9777 311779.219 503394.3677 180030.3735 595617.6008 319710.21 251707.4076 443702.6396 419899.7859 0.928266843 0.348414033 0.74250864 1.198844068 0.428746047 1.4184756 0.761396459 0.599446382 1.056686987 1 18.67968553 -5.004278882 24.94642468 0.905392461 0.615120646 0.131853852 0.298652204 334.6134261 1950885.918 0.074840895 0.150046502 9.90E-06 5.004278882 -0.290271815 ERLPS(ph)VDLK ddPTM_HeLa_A485_30min_R1 1 ERLPSVDLK 9 1 H7BZK4;Q8WUM9 H7BZK4 SLC20A1 Sodium-dependent phosphate transporter 1 1 0 ERLPS(1)VDLK 78.705 0.0044065 223340000 452590 504980 320570 324460 697580 253890 272920 254340 201950 246940 TRUE FALSE FALSE 553267.0841 564033.0183 439162.183 342184.4282 628126.4858 267183.2878 214608.4124 191962.7162 242479.5126 185382.4026 2.984463878 3.042538075 2.368952915 1.845830151 3.388274599 1.441254855 1.157652557 1.035495891 1.307996386 1 17.50014478 -6.408138748 5.57156866 1.150419282 2.670400319 0.788826613 0.399449167 0.111596486 4.717926083 0.147483824 0.129019451 3.91E-07 6.408138748 1.519981037 ESVAS(ph)GDDR ddPTM_HeLa_A486_30min_R1 2 ESVASGDDR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESVAS(1)GDDR;ESVAS(1)GDDR ; 167.11 8.69E-06 2400100000 3434000 3061400 1853100 655560 1861230 2200300 2247000 1939830 2401400 3176300 TRUE FALSE FALSE 3193294.333 2818803.515 2570669.948 1526176.81 1627777.178 1928849.357 1684776.834 1498173.055 2609555.286 2380933.806 1.341194083 1.183906712 1.079689801 0.640999261 0.683671749 0.81012305 0.707611791 0.629237592 1.096021771 1 21.18309608 -5.011111803 2.918690196 0.773048296 1.26302263 0.616130608 0.149889905 0.156851648 2.700794119 0.040659979 0.090038712 9.75E-06 5.011111803 0.489974334 ESVAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A485_30min_R1 2 ESVASGDDRAEEDMDEAIEK 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESVAS(1)GDDRAEEDMDEAIEK;ESVAS(1)GDDRAEEDMDEAIEK ; 281.85 5.84E-73 2649100000 2649000 2224700 1587340 3267200 2316000 2470900 3415800 2688700 2094700 4017200 TRUE FALSE FALSE 3238260.911 2484859.313 2174563.121 3445678.863 2085410.908 2600272.503 2685986.425 2029292.109 2515087.076 3015785.971 1.073770136 0.823950816 0.721060162 1.142547547 0.691498312 0.862220505 0.890642258 0.672889963 0.833973996 1 21.52410261 ESVAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A486_30min_R1 2 ESVASGDDRAEEDMDEAIEK 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.018)VAS(0.982)GDDRAEEDMDEAIEK;ES(0.002)VAS(0.998)GDDRAEEDMDEAIEK ; 189.2 1.60E-19 1831520000 1127607 1219430 654981 435161 790025 1380934 1389473 1170900 961692 1553490 TRUE FALSE FALSE 1048567.572 1122797.926 908607.1842 1013076.8 690932.6978 1210568.403 1041812.159 904311.6306 1045052.237 1164485.992 0.90045529 0.964200457 0.780264589 0.869977661 0.593337062 1.039573178 0.894654093 0.776575791 0.897436503 1 20.15126185 ESVAS(ph)GDDRAEEDMDEAIEKGEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A485_30min_R1 1 ESVASGDDRAEEDMDEAIEKGEAEQSEEEADEEDKAEDAR 40 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 ES(0.062)VAS(0.938)GDDRAEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR 71.653 0.00065026 816440000 107500 58113 40789 189980 77199 97617 171140 209300 70239 250840 TRUE FALSE FALSE 131413.0041 64908.80983 55878.54847 200358.1263 69512.7965 102728.0752 134574.5409 157968.8468 84335.32303 188310.2044 0.697853866 0.344690879 0.296736699 1.063979124 0.369139828 0.545525802 0.714642849 0.838875659 0.447853176 1 17.52275165 -14 0.130394107 2.364213391 0.423050578 0.224385191 0.229896409 215.3696846 1.767185289 76.72904161 1.729167203 1.00E-14 14 -1.941162813 ESVASGDDRAEEDMDEAIEKGEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A485_30min_R1 3 ESVASGDDRAEEDMDEAIEKGEAEQSEEEADEEDKAEDAR 40 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESVASGDDRAEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR;ESVASGDDRAEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR;ESVASGDDRAEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR ;; 159.06 1.83E-11 3880700000 799722 538047 321855 1609440 727134 989897 1741280 1665980 600600 2112730 TRUE FALSE FALSE 977617.3999 600966.9163 440922.558 1697359.632 654737.9858 1041726.476 1369241.303 1257395.793 721134.911 1586065.293 0.616379038 0.378904273 0.277997734 1.070170087 0.412806452 0.656799238 0.863294411 0.792776816 0.45466912 1 20.59702073 -7.241531511 0.085732771 1.410304111 9.00E-12 0.230818538 0.227408986 20.78605027 1.714045489 12.83603827 13.82320449 5.73E-08 7.241531511 -1.410304111 ESVASGDDRAEEDMDEAIEKGEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A486_30min_R1 2 ESVASGDDRAEEDMDEAIEKGEAEQSEEEADEEDKAEDAR 40 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESVASGDDRAEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR;ESVASGDDRAEEDMDEAIEKGEAEQS(1)EEEADEEDKAEDAR ; 156.57 4.23E-10 1235500000 207570 216880 128087 122615 177441 256350 314240 311180 188487 393010 TRUE FALSE FALSE 193020.4149 199693.6389 177685.7167 285453.9166 155184.6952 224724.1434 235613.8283 240331.107 204825.2049 294597.7379 0.655199922 0.677851909 0.603146915 0.968961672 0.526768115 0.762816935 0.799781526 0.815794136 0.6952708 1 18.16838683 -14 0.135328577 1.932281992 0.619973617 0.371253197 0.113807226 151.5676277 1.27259236 38.164888 0.750552684 1.00E-14 14 -1.312308375 ESVASMGADS(ph)GDDFASDGSSSR ddPTM_HeLa_A485_30min_R1 1 ESVASMGADSGDDFASDGSSSR 22 0 Q5T165;Q92805 Q5T165 GOLGA1 Golgin subfamily A member 1 1 0 ESVASMGADS(1)GDDFASDGSSSR 215.87 9.38E-36 227750000 75122 99918 88934 66793 97690 84184 82421 97183 111830 115800 TRUE FALSE FALSE 91832.62973 111602.5409 121834.3875 70441.73246 87963.64059 88591.74407 64811.08003 73348.71687 134273.2552 86933.19114 1.056358665 1.28377366 1.401471473 0.810297328 1.011853349 1.019078477 0.745527447 0.84373662 1.544556843 1 16.40761948 -5.258835694 24.9557525 0.981056088 1.2508585 0.211714045 0.220311822 333.712474 3198544.145 0.060604627 0.099166188 5.51E-06 5.258835694 0.269802412 ESVDLPEEKLPIS(ph)DSPPDTQEIHVIEQEK ddPTM_HeLa_A486_30min_R1 1 ESVDLPEEKLPISDSPPDTQEIHVIEQEK 29 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESVDLPEEKLPIS(0.54)DS(0.458)PPDT(0.001)QEIHVIEQEK 95.681 0.00066874 222670000 60183 43097 16629 18073 20487 45295 52913 36320 30429 74219 TRUE FALSE FALSE 55964.48249 39681.83676 23068.19414 42074.85736 17917.32943 39706.96343 39673.60774 28050.72886 33066.61022 55634.07932 1.005938863 0.713264913 0.414641429 0.756278488 0.322056726 0.713716555 0.713117 0.504200469 0.594358901 1 15.76368127 -9.779176029 5.882266693 1.000000025 0.627941047 0.258566365 0.183506628 5.82E-08 1.20E-08 0.175289746 0.042514005 1.66E-10 9.779176029 -0.372058977 ESVDLPEEKLPISDS(ph)PPDTQEIHVIEQEK ddPTM_HeLa_A485_30min_R1 2 ESVDLPEEKLPISDSPPDTQEIHVIEQEK 29 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESVDLPEEKLPIS(0.207)DS(0.793)PPDTQEIHVIEQEK;ESVDLPEEKLPIS(0.001)DS(0.999)PPDTQEIHVIEQEK ; 315.4 4.51E-109 500900000 577420 526210 255270 683790 417390 485760 697460 796330 401340 1041650 TRUE FALSE FALSE 705865.0869 587745.6821 349704.9957 721143.7163 375833.1861 511193.6425 548441.9733 601028.8189 481885.2567 781985.8251 0.902657138 0.751606568 0.447201195 0.922195381 0.480613809 0.65371216 0.70134516 0.768592984 0.616232726 1 19.57678293 -10.14260347 5.355252562 1.000007941 0.689933489 0.278013422 0.147917386 1.34E-05 2.15E-06 0.137125551 0.03325698 7.20E-11 10.14260347 -0.310074452 ESVDLPEEKLPISDS(ph)PPDTQEIHVIEQEK ddPTM_HeLa_A486_30min_R1 1 ESVDLPEEKLPISDSPPDTQEIHVIEQEK 29 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESVDLPEEKLPIS(0.03)DS(0.97)PPDTQEIHVIEQEK 240.87 2.89E-50 225640000 217960 159510 52925 58536 77898 168980 186810 153480 110760 287230 TRUE FALSE FALSE 202682.1295 146869.8467 73418.97738 136274.7662 68127.30647 148132.9657 140068.1621 118535.9544 120360.766 215305.7384 0.941368916 0.682145528 0.340998702 0.632936062 0.316421229 0.688012158 0.650554709 0.550547121 0.559022564 1 17.71602725 -10.45822131 5.81889324 1.000290883 0.586695191 0.337760215 0.169373209 0.000643243 5.99E-05 0.165044328 0.040001589 3.48E-11 10.45822131 -0.413595692 ESVDLPEEKLPISDS(ph)PPDTQEIHVIEQEKLEAQDSGEEAR ddPTM_HeLa_A485_30min_R1 1 ESVDLPEEKLPISDSPPDTQEIHVIEQEKLEAQDSGEEAR 40 2 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESVDLPEEKLPIS(0.179)DS(0.8)PPDT(0.02)QEIHVIEQEKLEAQDSGEEAR 158.38 1.30E-11 183910000 30230 13657 17525 50950 55475 31615 60606 72734 38574 97995 TRUE FALSE FALSE 36954.55921 15254.06735 24008.22678 53733.26949 49951.71422 33270.31251 47657.03299 54895.87246 46315.44798 73566.64996 0.502327607 0.207350306 0.326346609 0.73040256 0.678999441 0.452247214 0.647807573 0.746205957 0.629571253 1 16.16676428 -6.630580156 0.140664473 1.211647104 1.81E-18 0.61013796 0.135017269 6.224671609 0.516991875 1.526734515 2.464544121 2.34E-07 6.630580156 -1.211647104 ESVDLPEEKLPISDS(ph)PPDTQEIHVIEQEKLEAQDSGEEAR ddPTM_HeLa_A486_30min_R1 2 ESVDLPEEKLPISDSPPDTQEIHVIEQEKLEAQDSGEEAR 40 2 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ESVDLPEEKLPIS(0.04)DS(0.96)PPDTQEIHVIEQEKLEAQDSGEEAR;ESVDLPEEKLPIS(0.017)DS(0.983)PPDTQEIHVIEQEKLEAQDSGEEAR ; 265.21 5.61E-66 540470000 211519 191165 112072 164399 253090 293570 426450 395590 164666 331360 TRUE FALSE FALSE 196692.6104 176016.3892 155469.2798 382729.1803 221345.0922 257352.3182 319747.6995 305522.7927 178939.3815 248385.2992 0.791885071 0.708642539 0.625919812 1.54086889 0.891136041 1.036101247 1.287305249 1.230035729 0.720410516 1 17.92222026 -5.213240804 24.9988168 1.106756814 0.70879827 0.410990222 0.214980539 378.9973051 196571.2501 0.056769769 0.098327845 6.12E-06 5.213240804 -0.397958544 ESVDS(ph)RDS(ph)SHS(ph)R ddPTM_HeLa_A485_30min_R1 2 ESVDSRDSSHSR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 ES(0.07)VDS(0.951)RDS(0.923)S(0.117)HS(0.939)R;ES(0.008)VDS(0.996)RDS(0.991)S(0.114)HS(0.891)R ; 116.78 0.0022106 197781000 470470 589410 506420 487130 495120 463620 556690 471660 469770 574010 TRUE FALSE FALSE 575124.4284 658336.3723 693765.8319 513740.6784 445824.1143 487894.4263 437748.6338 355984.6455 564048.53 430919.8709 1.334643555 1.527746611 1.609964819 1.192195378 1.034587042 1.132216125 1.015846944 0.826104038 1.308940636 1 18.7170601 -5.447866092 3.937929967 1.0492923 1.492025003 0.691962627 0.130301438 0.125306923 3.684977184 0.037490948 0.055937792 3.57E-06 5.447866092 0.442732703 ESVDS(ph)RDS(ph)SHS(ph)R ddPTM_HeLa_A486_30min_R1 1 ESVDSRDSSHSR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 ES(0.02)VDS(0.98)RDS(0.942)S(0.076)HS(0.982)R 81.723 0.009912 340570000 674420 727740 517410 221800 558030 671410 670630 571020 623430 788580 TRUE FALSE FALSE 627146.6407 670071.232 717765.0087 516361.6092 488036.674 588578.2606 502831.2808 441011.2113 677469.4144 591114.4352 1.060956396 1.133572777 1.214257284 0.873539163 0.825621309 0.995709503 0.850649639 0.746067403 1.146088429 1 19.17307793 -5.268533365 24.95234916 0.905461419 1.135993217 0.442079096 0.110702094 441.0530128 1551358.131 0.030185757 0.045876037 5.39E-06 5.268533365 0.230531799 ESVDS(ph)RDS(ph)SHS(ph)RER ddPTM_HeLa_A485_30min_R1 1 ESVDSRDSSHSRER 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 ES(0.031)VDS(0.966)RDS(0.782)S(0.44)HS(0.782)RER 60.669 0.029128 395910000 192220 260130 333080 326050 591530 336300 479170 528630 372510 464250 TRUE FALSE FALSE 234978.6758 290549.9407 456300.1526 343861.2859 532635.1962 353908.148 376791.415 398982.6636 447269.3401 348521.0189 0.674216656 0.833665475 1.309247156 0.98662998 1.528272808 1.015457114 1.081115326 1.144787953 1.28333534 1 18.41088614 -4.615672502 4.832970188 1.170595128 0.709375182 0.524026946 0.160816581 0.139332163 5.380325148 0.039555119 0.113369691 2.42E-05 4.615672502 -0.461219946 ESVDS(ph)RDS(ph)SHS(ph)RER ddPTM_HeLa_A486_30min_R1 1 ESVDSRDSSHSRER 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 ES(0.017)VDS(0.98)RDS(0.759)S(0.486)HS(0.759)RER 57.798 0.036281 519540000 264590 346690 384150 197750 664910 420780 526130 546880 333540 337550 TRUE FALSE FALSE 246043.6073 319217.0218 532903.1679 460371.9937 581510.7878 368868.4418 394486.7092 422367.3623 362451.5158 253025.2829 0.972407202 1.261601284 2.106126162 1.819470325 2.298231944 1.457832346 1.559080202 1.6692694 1.432471536 1 17.94892202 -8.251487424 1.213842403 0.998970185 1.674742213 0.221609591 0.363452148 1.453190974 3.970136662 0.37218771 0.11429375 5.60E-09 8.251487424 0.675772028 ESVDS(ph)RDSS(ph)HS(ph)R ddPTM_HeLa_A486_30min_R1 1 ESVDSRDSSHSR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 ES(0.345)VDS(0.655)RDS(0.396)S(0.607)HS(0.998)R 83.404 0.0079556 301190000 803270 938900 599150 302870 652690 797490 751380 670220 779420 904870 TRUE FALSE FALSE 746964.9211 864498.1446 831156.9258 705096.6662 570823.5341 699103.7921 563376.7767 517625.5368 846980.7532 678284.6623 1.101255804 1.274535888 1.225380688 1.039529132 0.841569279 1.030693794 0.83059047 0.763139085 1.248709871 1 19.37153134 -5.42873304 3.749380138 0.93811281 1.206359947 0.404603582 0.133213813 0.216257986 5.56479853 0.037986615 0.057356872 3.73E-06 5.42873304 0.268247137 ESVDSRDS(ph)SHS(ph)R ddPTM_HeLa_A485_30min_R1 1 ESVDSRDSSHSR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 ES(0.003)VDS(0.011)RDS(0.964)S(0.087)HS(0.934)R 48.555 0.0084141 0 650110 832580 705890 645520 750380 756810 760140 780670 761810 803800 TRUE FALSE FALSE 794724.7266 929942.9885 967028.0855 680783.1231 675669.5325 796435.4013 597729.8792 589209.4585 914698.2793 603427.4528 1.31701785 1.541101559 1.602558984 1.12819382 1.119719577 1.31985278 0.990557981 0.976437939 1.515838027 1 19.20282081 -5.270821462 24.84385606 1.148265346 1.492313674 0.453093357 0.169532141 517.1996626 1369549.764 0.046819781 0.070520712 5.36E-06 5.270821462 0.344048328 ESVNS(ph)PVFGK ddPTM_HeLa_A485_30min_R1 2 ESVNSPVFGK 10 0 E7ESJ3;Q9UPS8-2;Q9UPS8 E7ESJ3 ANKRD26 Ankyrin repeat domain-containing protein 26 1 0 ESVNS(1)PVFGK;ES(0.001)VNS(0.999)PVFGK ; 173.06 1.82E-07 1138990000 1630750 1608010 1203150 1874950 1988920 1690860 2449300 2492500 1567010 2656300 TRUE FALSE FALSE 1993504.711 1796052.782 1648245.252 1977373.771 1790896.141 1779390.815 1925987.046 1881210.467 1881494.534 1994133.296 0.999684783 0.900668368 0.82654718 0.991595585 0.898082463 0.892312875 0.965826633 0.943372477 0.943514928 1 20.92733042 -8.106131188 0.60217108 0.999936354 0.916624285 0.179662424 0.048620951 1.649809019 1.370997144 0.052279071 0.021877558 7.83E-09 8.106131188 -0.08331207 ESVNS(ph)PVFGK ddPTM_HeLa_A486_30min_R1 1 ESVNSPVFGK 10 0 E7ESJ3;Q9UPS8-2;Q9UPS8 E7ESJ3 ANKRD26 Ankyrin repeat domain-containing protein 26 1 0 ESVNS(1)PVFGK 173.06 1.82E-07 452030000 1034300 1076300 657220 434850 1018800 1194800 1306800 1302300 786790 1353700 TRUE FALSE FALSE 961800.9111 991010.0682 911713.185 1012352.776 891012.6041 1047397.724 979824.8181 1005794.719 854989.5907 1014724.709 0.947844181 0.976629483 0.89848328 0.997662486 0.878083086 1.032198896 0.965606543 0.991199594 0.842582804 1 19.95265695 -6.258649561 24.99526607 0.9657231 0.942715716 0.051405756 0.056334727 1004.359701 8998535.543 0.01832693 0.017540949 5.51E-07 6.258649561 -0.023007384 ESVPEFPLS(ph)PPK ddPTM_HeLa_A485_30min_R1 6 ESVPEFPLSPPK 12 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK ;;;;; 242.8 7.11E-28 12298680000 3582070 2107540 2155950 8040790 4077020 2386920 4125640 2405890 2791180 9780510 TRUE FALSE FALSE 4378889.114 2353998.47 2953525.622 8480037.997 3671097.574 2511895.44 3244163.311 1815841.705 3351344.224 7342408.854 0.596383176 0.320603022 0.402255674 1.154939498 0.499985447 0.342107814 0.441839099 0.247308716 0.456436612 1 22.80782202 -10.81636079 8.778412904 1.012363023 0.493959307 0.285037617 0.23956285 0.059132647 0.001237018 0.236630262 0.059521585 1.53E-11 10.81636079 -0.518403715 ESVPEFPLS(ph)PPK ddPTM_HeLa_A486_30min_R1 7 ESVPEFPLSPPK 12 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK ;;;;;; 220.21 5.75E-23 16700959000 2270760 3166930 1499550 1961778 2613097 3653050 4474620 3866720 2283639 4470950 TRUE FALSE FALSE 2111591.45 2915970.933 2080215.919 4567118.327 2285338.008 3202373.832 3355022.748 2986352.266 2481586.667 3351395.019 0.630063433 0.870076764 0.620701501 1.362751422 0.681906488 0.95553458 1.001082454 0.891077372 0.740463793 1 21.67633031 ESVPEFPLS(ph)PPKK ddPTM_HeLa_A486_30min_R1 2 ESVPEFPLSPPKK 13 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPKK;ESVPEFPLS(1)PPKK ; 102.65 0.00034801 259040000 341690 439510 160065 271230 350390 582140 661610 582740 305100 663730 TRUE FALSE FALSE 317739.2955 404681.6269 222046.4547 631437.1472 306440.8189 510321.4856 496068.1802 450062.8231 331546.3137 497527.6878 0.638636408 0.813385138 0.446299694 1.269149763 0.615927166 1.025714745 0.99706648 0.904598546 0.666387664 1 18.92441729 -5.239336674 24.95334064 0.915826722 0.650834929 0.324505418 0.192688717 999.0864693 1127939.441 0.049685692 0.08596834 5.76E-06 5.239336674 -0.264991793 ESVPEFPLS(ph)PPKKK ddPTM_HeLa_A485_30min_R1 2 ESVPEFPLSPPKKK 14 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPKKK;ESVPEFPLS(1)PPKKK ; 116.43 7.73E-05 8723900000 1490860 983430 574780 2274420 1982860 1706290 3225200 3182400 1082030 3242800 TRUE FALSE FALSE 1822496.664 1098433.584 787415.0406 2398665.805 1785439.496 1795628.706 2536109.673 2401911.41 1299183.496 2434429.639 0.748633945 0.451207776 0.323449496 0.985309153 0.73341183 0.737597291 1.041767497 0.986642362 0.533670588 1 21.21515237 -5.266356094 24.98987756 0.8564423 0.502108141 0.450453442 0.178112315 365.1826445 1856092.211 0.049853231 0.076652738 5.42E-06 5.266356094 -0.354334159 ESVPEFPLS(ph)PPKKK ddPTM_HeLa_A486_30min_R1 3 ESVPEFPLSPPKKK 14 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPKKK;ESVPEFPLS(1)PPKKK;ESVPEFPLS(1)PPKKK ;; 151.48 3.53E-08 9886500000 2420930 2084150 909540 2407450 2783130 3175860 5180790 4889200 1665050 4744160 TRUE FALSE FALSE 2251235.309 1918994.364 1261738.246 5604665.266 2434043.884 2784054.683 3884501.545 3776035.89 1809377.875 3556191.457 0.633046712 0.539620655 0.354800427 1.576030237 0.68445243 0.782875365 1.092320701 1.061820191 0.50879653 1 21.76190157 ESVS(ph)PEDSEK ddPTM_HeLa_A485_30min_R1 2 ESVSPEDSEK 10 0 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 0 ESVS(1)PEDSEK;ESVS(1)PEDSEK ; 248.21 2.36E-21 1668170000 1697370 1315260 978710 2476110 2002850 1457820 2134830 2336330 1426330 4433800 TRUE FALSE FALSE 2074944.101 1469068.216 1340775.557 2611373.619 1803439.222 1534149.201 1678706.131 1763341.404 1712581.348 3328535.258 0.623380538 0.441355762 0.402812484 0.784541372 0.541811662 0.460908202 0.504337794 0.529764977 0.514515009 1 21.66645602 -10.04605845 5.092621572 1.000003311 0.531641637 0.65450927 0.101622725 7.62E-06 1.43E-06 0.100018502 0.024257714 8.99E-11 10.04605845 -0.468361673 ESVS(ph)PEDSEK ddPTM_HeLa_A486_30min_R1 3 ESVSPEDSEK 10 0 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 0 ESVS(1)PEDSEK;ESVS(1)PEDSEK;ESVS(0.968)PEDS(0.032)EK ;; 253.16 2.76E-26 2173101000 3562280 3568940 1791403 1857933 2705320 3812850 5077080 4421950 2654780 5419190 TRUE FALSE FALSE 3312582.568 3286124.197 2485082.217 4325361.919 2365993.539 3342459.333 3806740.884 3415168.515 2884898.468 4062189.551 0.815467256 0.808953929 0.611759295 1.064785841 0.582442919 0.822822099 0.937115523 0.840721112 0.710183125 1 21.95382613 -6.520071033 24.99147637 0.86176558 0.777049593 0.090561485 0.140955692 327.7145235 2917048.346 0.051137385 0.040353992 3.02E-07 6.520071033 -0.084715986 ESVSTEDLSPPS(ph)PPLPK ddPTM_HeLa_A485_30min_R1 1 ESVSTEDLSPPSPPLPK 17 0 Q13127;Q13127-4 Q13127 REST RE1-silencing transcription factor 1 0 ESVSTEDLS(0.002)PPS(0.998)PPLPK 143.38 8.34E-08 67485000 147390 168390 129810 163900 204450 192130 226550 240830 148870 279650 TRUE FALSE FALSE 180176.397 188081.7457 177832.1208 172853.442 184094.2401 202189.6297 178145.7418 181766.0649 178746.8435 209938.4016 0.858234585 0.895890148 0.84706809 0.823353139 0.876896455 0.96309026 0.848561961 0.865806653 0.85142519 1 17.67960656 -6.000205002 24.99999962 0.89672264 0.857302854 0.18063207 0.04810942 16.15038606 1969917.484 0.014960276 0.016791607 1.00E-06 6.000205002 -0.039419786 ESWHGKPLPK ddPTM_HeLa_A485_30min_R1 2 ESWHGKPLPK 10 1 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 ; ; 107.83 0.0029144 809810000 603090 848970 665710 422310 928510 652250 753730 675150 783160 728120 FALSE FALSE TRUE 737245.2899 948249.6564 911983.8315 445379.726 836064.2842 686400.8014 592689.4281 509568.4039 940333.0284 546613.0841 1.348751633 1.734773067 1.668426641 0.814798875 1.529535806 1.255734305 1.084294257 0.932228698 1.720290011 1 19.06016047 -5.223853548 24.99354607 1.200518167 1.599062835 0.303353384 0.272364241 677.9660274 450827.9634 0.071006932 0.122983736 5.97E-06 5.223853548 0.398544668 ESWVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 ESWVSPR 7 0 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 ESWVS(1)PR;ESWVS(1)PR;ESWVS(1)PR;ESWVS(1)PR ;;; 119.62 0.0021085 1258860000 1515390 1876110 1658880 2061960 2146910 1791570 2218720 2173620 1539550 2396250 TRUE FALSE FALSE 1852483.277 2095504.745 2272568.744 2174599.654 1933156.102 1885373.835 1744672.347 1640536.287 1848523.563 1798908.975 1.029781553 1.164875363 1.263303911 1.208843629 1.074626971 1.048065167 0.969850265 0.911961811 1.027580378 1 20.77869076 -6.226617233 1.825067252 0.973193643 1.170987654 0.623198888 0.064225136 0.23145686 1.520228864 0.027734845 0.025992823 5.93E-07 6.226617233 0.197794011 ESWVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ESWVSPR 7 0 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 ESWVS(1)PR;ESWVS(1)PR ; 140.83 0.001511 468640000 550920 634340 537510 198362 732450 577060 638660 663470 515610 596840 TRUE FALSE FALSE 512303.353 584072.5882 745648.267 461796.7607 640579.2912 505868.2043 478860.5129 512412.3644 560303.4899 447387.3792 1.145100145 1.305518697 1.666672556 1.032207841 1.431822445 1.130716305 1.070348729 1.145343808 1.252390023 1 18.77116503 -6.290829826 20.78634427 1.125755185 1.31935346 0.254832952 0.167814485 132.9766775 94045.8291 0.058287469 0.051428188 5.12E-07 6.290829826 0.193598275 ESYDAPPT(ph)PSGAR ddPTM_HeLa_A486_30min_R1 2 ESYDAPPTPSGAR 13 0 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 ESYDAPPT(0.996)PS(0.004)GAR;ESYDAPPT(1)PSGAR ; 199.87 1.11E-15 0 597310 848340 763740 252420 902770 754520 773520 797190 647450 591290 TRUE FALSE FALSE 555441.6535 781114.4488 1059480.582 587646.5166 789536.1686 661434.9938 579977.1145 615687.2395 703571.4873 443227.1353 1.253176101 1.762334448 2.390378425 1.325836055 1.78133536 1.492316108 1.308532507 1.389100961 1.587383604 1 18.75768668 -6.374072961 1.398515829 1.340106373 1.746156856 0.232338129 0.319555608 0.662307745 2.611797155 0.15824033 0.13032302 4.23E-07 6.374072961 0.406050483 ESYSIYVYK ddPTM_HeLa_A485_30min_R1 2 ESYSIYVYK 9 0 P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P23527;Q16778 HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ; ; 214.64 1.52E-16 558100000 681160 800940 701190 716130 1025160 849960 1019310 1173280 751020 1034740 FALSE FALSE TRUE 832681.692 894602.9657 960589.36 755250.3686 923091.4708 894462.5913 801526.0915 885531.2404 901742.8252 776798.361 1.071940588 1.151654034 1.236600652 0.972260507 1.188328294 1.151473325 1.031832882 1.139975681 1.160845427 1 19.56718063 -10.55671564 2.620507378 0.991520286 1.123142929 0.200257466 0.073598106 14625181.27 13899366.49 869306.9308 0.018023941 2.78E-11 10.55671564 0.131622643 ESYSIYVYK ddPTM_HeLa_A486_30min_R1 2 ESYSIYVYK 9 0 P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P23527;Q16778 HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ; ; 199.29 1.99E-11 379040000 527160 593990 437270 180061 681810 558690 623490 632830 550610 622770 FALSE FALSE TRUE 490208.8063 546920.0691 606592.6545 419191.1078 596291.0322 489764.5081 467486.2074 488748.4236 598337.3181 466824.3384 1.050092649 1.171575739 1.299402376 0.897963266 1.277334927 1.049140903 1.001417812 1.046964315 1.281718344 1 18.83252025 ESYSVYVYK ddPTM_HeLa_A485_30min_R1 1 ESYSVYVYK 9 0 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 205.7 9.71E-12 826160000 587730 656120 570510 660190 821450 623320 844630 969140 585780 825780 FALSE FALSE TRUE 718468.5109 732847.5265 781565.3899 696254.508 739663.5537 655956.0714 664167.9005 731456.8954 703340.6729 619928.2434 1.158954312 1.182148957 1.260735252 1.123121128 1.193143822 1.058116126 1.071362545 1.179905744 1.134551749 1 19.24174171 -6.247501782 24.63101822 1.098942299 1.184461992 0.419838278 0.055092459 739.0241918 1306029.612 0.018451973 0.018369284 5.66E-07 6.247501782 0.085519693 ESYSVYVYK ddPTM_HeLa_A486_30min_R1 1 ESYSVYVYK 9 0 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 134.91 0.0084626 217140000 239510 298090 334760 108450 462790 282970 298450 345580 304050 277470 FALSE FALSE TRUE 222721.5858 274468.2628 464388.0372 252477.0808 404742.5629 248060.0384 223774.6533 266898.978 330405.2988 207989.706 1.070829851 1.319624265 2.232745294 1.213892195 1.945974013 1.192655364 1.075892926 1.283231671 1.588565632 1 17.6661526 ESYTEEIVS(ph)EAESHVS(ph)GISR ddPTM_HeLa_A485_30min_R1 2 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 2 0 ESYTEEIVS(1)EAESHVS(0.998)GIS(0.002)R;ESYTEEIVS(1)EAESHVS(0.995)GIS(0.005)R ; 148.1 1.62E-09 256020000 212445 261973 274775 233115 334710 289784 321910 354570 254086 286420 TRUE FALSE FALSE 259702.6573 292608.4635 376425.7068 245849.4822 301385.0972 304956.6421 253131.2987 267611.1516 305078.7296 215020.7652 1.207802684 1.360838165 1.75064816 1.143375534 1.401655775 1.418266008 1.177241177 1.244582826 1.418833801 1 17.71411647 -12.95390886 0.199945092 2.24E-16 1.412279196 0.282338951 0.16619684 114.978942 1.658455828 46.70507986 0.414116515 1.11E-13 12.95390886 1.412279196 ESYTEEIVS(ph)EAESHVS(ph)GISR ddPTM_HeLa_A486_30min_R1 1 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 2 0 ESYTEEIVS(1)EAES(0.003)HVS(0.989)GIS(0.008)R 97.94 0.00028196 152690000 53840 67914 56896 18547 81749 62830 70264 69037 59708 62204 TRUE FALSE FALSE 50066.09403 62532.2473 78927.65493 43178.35331 71495.27814 55078.67341 52683.20402 53318.78217 64883.53751 46627.71352 1.073741135 1.341096155 1.692719822 0.926023389 1.533321554 1.181243283 1.129868914 1.143499823 1.391523037 1 15.50890007 -6.469317561 24.99694437 1.174948279 1.318755556 0.096987614 0.21936049 814.4830992 380118.2985 0.075103439 0.06623457 3.39E-07 6.469317561 0.143807277 ESYTEEIVS(ph)EAESHVSGISR ddPTM_HeLa_A485_30min_R1 6 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR ;;;;; 356.44 4.49E-128 1953070000 699416.9 1404383.9 1547846 317152.3 1813046 916688.7 1158169 1155540 1204496 777018.2 TRUE FALSE FALSE 854999.7764 1568614.381 2120458.647 334477.5271 1632532.774 964685.1029 910716.7318 872142.0032 1446227.299 583321.8627 1.465742725 2.689106102 3.635143447 0.573401322 2.798682646 1.65377841 1.561259384 1.495129977 2.479295551 1 19.15393262 -5.256971613 24.9999033 1.716395524 2.605908183 0.234775898 0.775641171 589.977886 3301278.735 0.206611708 0.34274721 5.53E-06 5.256971613 0.889512658 ESYTEEIVS(ph)EAESHVSGISR ddPTM_HeLa_A486_30min_R1 5 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR ;;;; 376.56 2.21E-142 1661547000 866994 1016541 1158756 58554.1 1378709 637768 773986 747710 1038727 281558 TRUE FALSE FALSE 806222.1978 935986.589 1607457.356 136316.904 1205778.461 559086.6685 580326.5164 577472.7554 1128764.693 211054.0442 3.819979858 4.434819492 7.61633051 0.645886244 5.713126541 2.649021348 2.749658357 2.736136887 5.34822584 1 17.68725295 -5.260038359 24.99918925 3.140587924 5.204820711 0.261234921 1.765825274 187.0470727 3337552.26 0.467509141 0.756740643 5.49E-06 5.260038359 2.064232787 ESYTEEIVSEAESHVS(ph)GISR ddPTM_HeLa_A485_30min_R1 4 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ESYTEEIVSEAESHVS(0.996)GIS(0.004)R;ESYTEEIVSEAESHVS(1)GISR;ESYTEEIVSEAES(0.001)HVS(0.98)GIS(0.019)R;ESYTEEIVSEAESHVS(0.999)GISR ;;; 205.65 1.45E-26 265871000 183124 276903 292441 219564 316030 249311 279964 317626 291735 308037 TRUE FALSE FALSE 223859.302 309284.3971 400627.0954 231558.2254 284564.9436 262364.5385 220147.4043 239727.7255 350283.5385 231249.0449 0.968044223 1.337451565 1.732448649 1.001337002 1.23055619 1.134554041 0.951992707 1.036664716 1.514745882 1 17.81908788 ESYTEEIVSEAESHVS(ph)GISR ddPTM_HeLa_A486_30min_R1 4 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ESYTEEIVSEAESHVS(1)GISR;ESYTEEIVSEAESHVS(0.997)GIS(0.003)R;ESYTEEIVSEAESHVS(0.999)GIS(0.001)R;ESYTEEIVSEAESHVS(1)GISR ;;; 234.09 4.02E-46 285650000 301912 325443 294294 83700 394870 289503 328299 315169 332155 322902 TRUE FALSE FALSE 280749.5279 299653.7114 408252.5183 194857.83 345341.7226 253787.0633 246155.1178 243411.8988 360946.4628 242045.2375 1.159905193 1.238007054 1.686678584 0.805047156 1.426765204 1.048510873 1.016979803 1.005646305 1.49123555 1 17.88491718 -5.264866073 24.99991531 1.12001905 1.349177941 0.193232309 0.231604901 521.9110873 3807684.079 0.062775093 0.097513661 5.43E-06 5.264866073 0.229158891 ET(ph)ERASPIKMDLAPSK ddPTM_HeLa_A485_30min_R1 3 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ET(0.5)ERAS(0.5)PIKMDLAPSK;ET(0.536)ERAS(0.464)PIKMDLAPSK;ET(0.672)ERAS(0.328)PIKMDLAPSK ;; 109.03 0.0010403 12647720000 3066300 2413984 1716168 4205990 3580190 3228590 5199490 4340880 2947340 6338850 TRUE FALSE FALSE 3748387.856 2696278.43 2351049.959 4435752.584 3223733.713 3397633.98 4088576.486 3276272.374 3538844.103 4758691.353 0.787692998 0.566600822 0.494053887 0.932137063 0.677441228 0.713984944 0.859180851 0.688481797 0.743659095 1 22.18213345 -13.99999999 0.131521248 1.950331512 0.599881179 0.355004517 0.118690175 162.7564619 1.342728104 40.75457772 0.890273724 1.00E-14 13.99999999 -1.350450333 ET(ph)ERASPIKMDLAPSK ddPTM_HeLa_A486_30min_R1 1 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ET(0.61)ERAS(0.39)PIKMDLAPSK 84.919 0.0066744 6297500000 1267200 1103200 573270 718190 1146500 1315600 1971500 1878200 1002700 1857300 TRUE FALSE FALSE 1178375.824 1015778.414 795255.4967 1671982.615 1002695.279 1153294.648 1478209.848 1450574.861 1089614.843 1392219.991 0.846400591 0.729610565 0.571213962 1.200947139 0.720213246 0.828385353 1.061764561 1.041914978 0.782645595 1 20.40895577 -5.24159674 24.99907703 0.939995475 0.717128612 0.338366349 0.148522672 1002.050056 1262447.964 0.040203014 0.069515016 5.73E-06 5.24159674 -0.222866862 ET(ph)LKSLGEEIQESLK ddPTM_HeLa_A485_30min_R1 2 ETLKSLGEEIQESLK 15 1 P48681 P48681 NES Nestin 1 0 ET(0.5)LKS(0.5)LGEEIQESLK;ET(0.5)LKS(0.5)LGEEIQESLK ; 111.95 0.00024557 39117000 48848 47228 32718 73139 80043 67684 121598 128477 50585 111237 TRUE FALSE FALSE 59714.06908 52750.90377 44821.74971 77134.39837 72073.63787 71227.82958 95617.59394 96967.81431 60736.94551 83507.66307 0.715072927 0.631689378 0.536738163 0.923680481 0.863078132 0.852949621 1.145015804 1.161184624 0.72732182 1 16.34962097 -5.573522865 1.39160912 0.992775691 0.625838697 0.525691655 0.136130262 0.33135491 1.31494711 0.050496968 0.085189099 2.67E-06 5.573522865 -0.366936994 ET(ph)LKSLGEEIQESLK ddPTM_HeLa_A486_30min_R1 1 ETLKSLGEEIQESLK 15 1 P48681 P48681 NES Nestin 1 0 ET(0.678)LKS(0.322)LGEEIQESLK 101.49 0.00059977 15110000 29745 26872 15878 26797 40654 37309 62726 62214 23637 51530 TRUE FALSE FALSE 27660.0291 24742.56485 22026.38683 62384.77025 35554.79624 32706.19491 47031.29135 48049.23032 25685.87419 38626.5526 0.716088474 0.640558455 0.57023952 1.615074762 0.920475524 0.846728292 1.217589668 1.243943016 0.664979722 1 15.2373053 ET(ph)LS(ph)LT(ph)LAEEK ddPTM_HeLa_A485_30min_R1 3 ETLSLTLAEEK 11 0 H7BZ55 H7BZ55 Putative ciliary rootlet coiled-coil protein-like 3 protein 3 0 ET(1)LS(1)LT(1)LAEEK;ET(1)LS(1)LT(1)LAEEK;ET(1)LS(1)LT(1)LAEEK ;; 90.412 0.0019007 967190000 2694950 5041800 2718640 800630 2393710 3514480 2530650 3312730 2659480 949080 TRUE FALSE FALSE 3294432.33 5631394.652 3724378.068 844366.3896 2155383.828 3698492.738 1989955.954 2500277.773 3193213.242 712491.8225 4.623817742 7.903802506 5.227257283 1.185089236 3.025134829 5.190926578 2.792952692 3.509202063 4.481754233 1 19.44251393 -1 0.234123633 2.432304869 24.94423507 0.294235275 1.642921938 67.13407496 0.886078448 2.45771575 582.7065369 0.1 1 22.5119302 ET(ph)LS(ph)LT(ph)LAEEK ddPTM_HeLa_A486_30min_R1 2 ETLSLTLAEEK 11 0 H7BZ55 H7BZ55 Putative ciliary rootlet coiled-coil protein-like 3 protein 3 0 ET(1)LS(1)LT(1)LAEEK;ET(1)LS(1)LT(1)LAEEK ; 75.739 0.0038967 359430000 1261630 1612720 888480 61229 1117200 981310 583910 738350 1151270 329050 TRUE FALSE FALSE 1173196.252 1484922.194 1232523.25 142544.2063 977070.3585 860245.9494 437809.542 570243.8231 1251063.011 246653.7382 4.756450319 6.020270377 4.996977784 0.577912207 3.96130367 3.487666376 1.774996581 2.311920456 5.072142914 1 17.91212763 -5.078892079 9.34001109 2.713940118 5.418631627 0.465583683 1.306155988 0.357762814 40.32017981 0.342638947 0.595387522 8.34E-06 5.078892079 2.70469151 ET(ph)PHSPGVEDAPIAK ddPTM_HeLa_A486_30min_R1 1 ETPHSPGVEDAPIAK 15 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ET(0.5)PHS(0.5)PGVEDAPIAK 152.37 1.44E-07 0 196750 215870 130670 72349 246580 229400 261760 268540 161480 225850 TRUE FALSE FALSE 182958.841 198763.675 181268.9235 168432.1283 215651.6371 201098.9604 196264.8794 207399.3042 175477.2164 169295.69 1.080705841 1.174062228 1.070723794 0.994899093 1.273816464 1.18785635 1.15930228 1.225071378 1.036513194 1 17.36918572 -4.219575848 20.73321187 1.1337001 1.080704469 0.011932558 0.09151586 10947.40206 5420715.337 0.022731696 4.84823464 6.03E-05 4.219575848 -0.05299563 ET(ph)RISFVEEDVHPK ddPTM_HeLa_A485_30min_R1 1 ETRISFVEEDVHPK 14 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ET(0.5)RIS(0.5)FVEEDVHPK 125.12 3.28E-05 75176000 91610 106850 92390 121990 178780 108900 153310 197870 110940 201500 TRUE FALSE FALSE 111988.3284 119345.178 126568.9057 128654.0048 160980.0355 114601.8356 120554.0661 149342.0723 133204.6404 151269.7583 0.74032199 0.788955964 0.836709909 0.850493887 1.064191794 0.757599119 0.796947568 0.987256633 0.880576804 1 17.20676407 -2.462969293 0.401660802 0.917633214 7.78E-118 0.303504106 0.08805112 31.41256241 1.257664536 0.066789466 18.71586597 0.003443743 2.462969293 -0.917633214 ET(ph)SPESSLIQDEIAVK ddPTM_HeLa_A485_30min_R1 1 ETSPESSLIQDEIAVK 16 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ET(0.5)S(0.5)PESSLIQDEIAVK 125.67 0.00010825 76291000 148980 132730 110300 186600 190430 172290 226880 213870 147380 254580 TRUE FALSE FALSE 182120.087 148251.6189 151104.56 196793.4855 171470.1206 181310.838 178405.2346 161418.0472 176957.8142 191117.8912 0.952920137 0.775707695 0.790635346 1.029696824 0.897195545 0.948685844 0.933482645 0.844599353 0.925909202 1 17.54410331 -5.2393978 24.98698025 0.931777995 0.833349723 0.323698358 0.065426172 962.8302543 1091491.343 0.017504268 0.030286094 5.76E-06 5.2393978 -0.098428272 ET(ph)SPESSLIQDEIAVK ddPTM_HeLa_A486_30min_R1 2 ETSPESSLIQDEIAVK 16 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ET(0.319)S(0.249)PES(0.319)S(0.113)LIQDEIAVK;ET(0.589)S(0.411)PESSLIQDEIAVK ; 166.9 2.51E-11 146949000 310377 315698 187330 126463.4 294819 277754 378020 349908 254580 393826 TRUE FALSE FALSE 288621.1751 290680.9407 259869.1929 294413.1863 257840.0519 243487.5355 283435.3977 270241.5868 276647.1994 295209.4062 0.977682855 0.984660159 0.880287645 0.997302864 0.87341408 0.824795993 0.960116418 0.915423361 0.937121899 1 18.17137916 -4.738856129 24.93675071 0.919158553 0.981171582 0.159413407 0.0521423 388.1731729 428619.6507 0.013146473 0.034725067 1.82E-05 4.738856129 0.062013028 ET(ph)SPNRIGLDR ddPTM_HeLa_A485_30min_R1 4 ETSPNRIGLDR 11 1 Q7Z460-4;F8WA11;Q7Z460-5 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 ET(0.665)S(0.335)PNRIGLDR;ET(0.675)S(0.325)PNRIGLDR;ET(0.558)S(0.442)PNRIGLDR;ET(0.627)S(0.373)PNRIGLDR ;;; 118.08 0.00030244 3139410000 803280 2585380 1552040 461466 2323560 2877310 3195340 6269400 1254450 848530 TRUE FALSE FALSE 981966.8647 2887717.701 2126204.182 486674.7191 2092218.208 3027961.502 2512629.505 4731819.82 1506206.609 637007.087 1.541532088 4.533258358 3.337803025 0.764002048 3.284450441 4.753418862 3.944429437 7.428205928 2.364505261 1 19.2809499 -6.007979606 24.30402152 4.271232626 2.653081419 0.090546675 1.828945823 514.3020488 1566452.375 0.564788507 0.612250922 9.82E-07 6.007979606 -1.618151207 ET(ph)SPNRIGLDR ddPTM_HeLa_A486_30min_R1 2 ETSPNRIGLDR 11 1 Q7Z460-4;F8WA11;Q7Z460-5 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 ET(0.737)S(0.263)PNRIGLDR;ET(0.653)S(0.347)PNRIGLDR ; 111.07 0.00061886 986770000 866540 646940 773750 376180 1660220 582860 1132620 1226580 455380 1064830 TRUE FALSE FALSE 805800.0208 595674.1183 1073366.722 875766.0511 1451979.727 510952.6593 849226.4964 947314.5101 494852.7051 798189.6371 1.009534556 0.746281448 1.344751512 1.097190455 1.819091177 0.64013943 1.063940769 1.186828876 0.619968842 1 19.60637202 ET(ph)SSDVALASHILTALR ddPTM_HeLa_A485_30min_R1 4 ETSSDVALASHILTALR 17 0 O00273;O00273-2 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 ET(0.527)S(0.369)S(0.104)DVALASHILTALR;ET(0.333)S(0.333)S(0.333)DVALASHILTALR;ET(0.597)S(0.387)S(0.015)DVALASHILTALR;ET(0.634)S(0.356)S(0.01)DVALASHILTALR ;;; 179.58 2.01E-17 60547000 34546.7 49419.3 46081 36958.3 59386.3 44756.7 55943.6 53697.6 46648.5 54714.3 TRUE FALSE FALSE 42231.49423 55198.45724 63128.27949 38977.23835 53473.59145 47100.0916 43990.79284 40528.17941 56010.42606 41075.03195 1.028154872 1.343844536 1.536901531 0.948927767 1.301851488 1.146684235 1.070986211 0.986686497 1.363612477 1 15.32597408 -5.272269822 24.94419536 1.123435614 1.307054749 0.20004181 0.170048955 1101.802019 2537619.92 0.047104629 0.070640072 5.34E-06 5.272269822 0.183619135 ET(ph)SSDVALASHILTALR ddPTM_HeLa_A486_30min_R1 2 ETSSDVALASHILTALR 17 0 O00273;O00273-2 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 ET(0.676)S(0.269)S(0.055)DVALASHILTALR;ET(0.572)S(0.328)S(0.1)DVALASHILTALR ; 148.91 7.04E-08 56776000 39232 47379 36893 15383.3 60205 47206 55776 55977 43546 63712 TRUE FALSE FALSE 36482.03939 43624.51549 51178.95763 35813.09983 52653.52751 41382.20368 41820.25486 43232.25907 47320.60234 47758.1005 0.763892178 0.913447458 1.071628835 0.749885348 1.102504642 0.866496013 0.875668304 0.905234057 0.990839289 1 15.54345784 ET(ph)SVSKEDTDHEEK ddPTM_HeLa_A486_30min_R1 2 ETSVSKEDTDHEEK 14 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ET(0.439)S(0.439)VS(0.105)KEDT(0.017)DHEEK;ET(0.327)S(0.327)VS(0.327)KEDT(0.018)DHEEK ; 68.41 0.012717 1020270000 750040 796880 461640 158860 512870 556340 549840 491790 530650 707270 TRUE FALSE FALSE 697466.0692 733732.3266 640399.3711 369834.1083 448541.0623 487704.4273 412264.2164 379820.1527 576647.1693 530164.9884 1.315564182 1.383969788 1.207924675 0.697583048 0.84604052 0.919910665 0.777614941 0.716418777 1.087674935 1 19.01608187 -5.09882391 4.531998922 0.851137848 1.340161914 0.755162871 0.115954275 0.097731665 3.331319604 0.030989396 0.056623024 7.96E-06 5.09882391 0.489024066 ET(ph)TMSPLLFQAQPLSHR ddPTM_HeLa_A486_30min_R1 1 ETTMSPLLFQAQPLSHR 17 0 Q5VVP1 Q5VVP1 SPATA31A6 Spermatogenesis-associated protein 31A6 1 0 ET(0.333)T(0.333)MS(0.333)PLLFQAQPLSHR 68.919 0.01596 658030000 450470 497300 237150 268790 435010 589390 698500 657990 429240 694470 TRUE FALSE FALSE 418894.3792 457892.1369 328980.8311 625756.7039 380446.9895 516677.0543 523727.912 508180.0408 466446.8688 520570.1918 0.80468376 0.879597303 0.631962483 1.202060191 0.730827457 0.992521398 1.006065888 0.976198885 0.896030691 1 18.98973318 -5.242911561 24.99857954 0.963196987 0.782832822 0.352645368 0.123444909 986.6520206 1331234.254 0.031811703 0.054973089 5.72E-06 5.242911561 -0.180364165 ETAIQTEDSAISES(ph)PEEPLPNLKPKPNLR ddPTM_HeLa_A486_30min_R1 1 ETAIQTEDSAISESPEEPLPNLKPKPNLR 29 2 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 ETAIQTEDSAISES(1)PEEPLPNLKPKPNLR 205.09 4.66E-29 268980000 194060 157670 117280 85353 227350 233660 259520 263270 165780 224870 TRUE FALSE FALSE 180457.3961 145175.655 162693.9569 198706.0975 198833.643 204833.4049 194585.3511 203329.1681 180149.9439 168561.0883 1.070575647 0.861264343 0.965192848 1.178837295 1.179593968 1.215187959 1.15439069 1.206263973 1.068751665 1 17.36291201 -5.255010263 21.57755225 1.156854728 0.955236134 0.512619905 0.07838942 52.64106706 176669.9646 0.020215451 0.033785806 5.56E-06 5.255010263 -0.201618594 ETAVPGPLGIEDIS(ph)PNLSPDDKSFSR ddPTM_HeLa_A485_30min_R1 1 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDIS(1)PNLSPDDKSFSR 155.58 8.79E-10 261020000 115020 165700 125640 126110 225090 197560 284830 383910 154070 185510 TRUE FALSE FALSE 140605.8022 185077.1736 172119.4643 132999.07 202679.2493 207903.9361 223973.7437 289755.4706 184990.4358 139265.7711 1.009622114 1.328949477 1.235906447 0.955001857 1.455341451 1.492857394 1.608246893 2.08059359 1.328326655 1 17.08748119 -5.929593194 5.618267667 1.566156978 1.154840489 0.281272558 0.273435881 0.236853586 13.59012918 0.084281882 0.095666945 1.18E-06 5.929593194 -0.411316489 ETAVPGPLGIEDIS(ph)PNLSPDDKSFSR ddPTM_HeLa_A486_30min_R1 3 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDIS(0.995)PNLS(0.004)PDDKSFSR;ETAVPGPLGIEDIS(0.995)PNLS(0.005)PDDKSFSR;ETAVPGPLGIEDIS(0.996)PNLS(0.004)PDDKSFSR ;; 126.64 4.18E-06 511350000 291415 275162 188292 114800 367367 288714 382896 409009 216663 413981 TRUE FALSE FALSE 270988.3134 253357.161 261203.705 267260.2017 321288.4053 253095.4021 287091.3709 315886.5793 235443.5233 310317.463 0.873261565 0.816445064 0.841730602 0.861247701 1.035353931 0.815601544 0.92515377 1.017946513 0.758718253 1 18.24338536 -5.543991871 24.97904311 0.92334662 0.8428112 0.176735764 0.082285388 396.2949961 468856.0275 0.023138502 0.029874598 2.86E-06 5.543991871 -0.080535421 ETAVPGPLGIEDISPNLS(ph)PDDK ddPTM_HeLa_A486_30min_R1 1 ETAVPGPLGIEDISPNLSPDDK 22 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDISPNLS(1)PDDK 149.04 1.03E-09 28355000 89409 91062 40030 47655 58257 103390 108770 94701 68053 158300 TRUE FALSE FALSE 83141.89081 83845.91548 55530.68804 110943.2484 50949.86384 90634.79299 81554.59555 73139.64961 73951.88883 118660.6496 0.700669439 0.706602532 0.467978965 0.934962422 0.429374557 0.763815075 0.687292677 0.616376615 0.623221675 1 16.85648206 -10.47852489 5.862184883 1.000299293 0.658743668 0.362337815 0.13574175 0.000487661 4.34E-05 0.120710558 0.029251437 3.32E-11 10.47852489 -0.341555625 ETAVPGPLGIEDISPNLS(ph)PDDKSFSR ddPTM_HeLa_A485_30min_R1 3 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDIS(0.002)PNLS(0.997)PDDKS(0.001)FS(0.001)R;ETAVPGPLGIEDISPNLS(0.997)PDDKS(0.001)FS(0.002)R;ETAVPGPLGIEDISPNLS(0.995)PDDKS(0.002)FS(0.003)R ;; 156.67 6.58E-10 2650730000 376752 334025 275669 432060 465300 407332 586050 643600 334098 593930 TRUE FALSE FALSE 460559.1826 373086.3181 377650.4346 455662.3438 418973.0982 428659.2737 460835.6299 485756.0909 401148.4041 445874.1815 1.032935303 0.83675246 0.846988793 1.021952745 0.93966665 0.96139066 1.033555315 1.089446555 0.89968969 1 18.76627714 -5.270386407 24.8678393 0.994215169 0.898678212 0.241836861 0.069956503 769.3566397 2138389.369 0.019674401 0.029657608 5.37E-06 5.270386407 -0.095536957 ETAVPGPLGIEDISPNLS(ph)PDDKSFSR ddPTM_HeLa_A486_30min_R1 3 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDIS(0.053)PNLS(0.935)PDDKS(0.006)FS(0.006)R;ETAVPGPLGIEDIS(0.001)PNLS(0.992)PDDKS(0.004)FS(0.004)R;ETAVPGPLGIEDISPNLS(1)PDDKSFSR ;; 245.25 5.63E-50 2893400000 474353 433979 234238 228695 449280 468749 626629 601574 312807 683382 TRUE FALSE FALSE 441103.3043 399588.9235 324941.2267 532413.5176 392927.113 410919.5143 469839.7964 464608.7325 339921.3626 512258.6991 0.861094804 0.780052978 0.634330324 1.039345 0.7670482 0.802171862 0.917192421 0.906980659 0.663573626 1 18.96651305 -11.10603991 2.588308646 1.334205183 0.82242621 0.183564763 0.114265381 21237083.88 5635378.526 41938844.91 0.028610396 7.83E-12 11.10603991 -0.511778973 ETCSTLAES(ph)PR ddPTM_HeLa_A485_30min_R1 4 ETCSTLAESPR 11 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR ;;; 235.99 1.15E-21 6564030000 1977670 2481080 2391470 1996610 2965630 2192240 2583470 2776240 2185000 2644930 TRUE FALSE FALSE 2417595.869 2771220.723 3276174.27 2105679.749 2670361.464 2307022.297 2031490.529 2095362.787 2623509.458 1985597.627 1.217565853 1.395660775 1.649968868 1.060476564 1.344865358 1.161878049 1.023112891 1.055280666 1.321269436 1 20.92114187 -5.813985866 1.248509465 1.111298136 1.394854713 0.331251509 0.160377924 0.523000401 1.71791945 0.066249366 0.090490773 1.53E-06 5.813985866 0.283556577 ETCSTLAES(ph)PR ddPTM_HeLa_A486_30min_R1 3 ETCSTLAESPR 11 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR ;; 269.33 3.17E-28 5794300000 3947630 4690300 3593800 1242869 4667470 3903340 4085560 4224200 3455720 4270500 TRUE FALSE FALSE 3670921.523 4318623.546 4985415.605 2893461.843 4082032.39 3421785.597 3063309.675 3262441.874 3755264.592 3201139.004 1.146754801 1.349089665 1.557388042 0.903885098 1.275181236 1.068927526 0.95694366 1.019150331 1.173102632 1 21.61015389 -5.267213014 24.99907992 1.062990594 1.35087872 0.49686302 0.13562854 391.8967506 1696861.925 0.038081841 0.058234472 5.40E-06 5.267213014 0.287888125 ETDILDDEMPHHDLHSVDS(ph)LGTLSSSEGPQSAHLGPFTCHK ddPTM_HeLa_A486_30min_R1 2 ETDILDDEMPHHDLHSVDSLGTLSSSEGPQSAHLGPFTCHK 41 0 Q68CZ2;E9PCX8 Q68CZ2 TNS3 Tensin-3 1 0 ETDILDDEMPHHDLHSVDS(0.916)LGT(0.076)LS(0.005)S(0.002)S(0.001)EGPQSAHLGPFTCHK;ETDILDDEMPHHDLHS(0.014)VDS(0.702)LGT(0.213)LS(0.053)S(0.014)S(0.004)EGPQSAHLGPFTCHK ; 119.22 1.88E-07 347700000 136438 138455 123608 20883.3 164299 125039 149946 148618 118180 97046 TRUE FALSE FALSE 126874.4008 127483.3216 171472.3279 48617.37778 143691.0874 109612.9595 112427.9248 114780.9257 128423.9376 72745.04994 1.744096689 1.752467304 2.357168331 0.668325581 1.975269623 1.506809873 1.545506188 1.577852044 1.765397614 1 16.15056146 -11.78352429 0.214719057 4.22E-27 1.757135479 0.18868837 0.405278954 88.45036234 2.068936091 43.17342557 0.865476599 1.65E-12 11.78352429 1.757135479 ETDILDDEMPHHDLHSVDSLGT(ph)LSSSEGPQSAHLGPFTCHK ddPTM_HeLa_A485_30min_R1 1 ETDILDDEMPHHDLHSVDSLGTLSSSEGPQSAHLGPFTCHK 41 0 Q68CZ2;E9PCX8 Q68CZ2 TNS3 Tensin-3 1 0 ETDILDDEMPHHDLHS(0.001)VDS(0.023)LGT(0.583)LS(0.392)S(0.002)S(0.001)EGPQSAHLGPFTCHK 142.47 3.90E-11 198160000 136770 156200 107300 60300 184290 110460 153110 179840 132860 123260 TRUE FALSE FALSE 167194.0146 174466.2312 146994.7351 63594.03631 165941.4405 116243.5148 120396.7977 135733.958 159523.7833 92533.55043 1.806847504 1.885437557 1.588556091 0.687253823 1.793311072 1.256231002 1.301115078 1.466862099 1.72395615 1 16.49768893 -5.001685531 22.04711594 1.337673757 1.81885709 0.327818864 0.303829785 16.78802024 219662.377 0.07782676 0.157432566 9.96E-06 5.001685531 0.481183332 ETDILDDEMPHHDLHSVDSLGTLSS(ph)SEGPQSAHLGPFTCHK ddPTM_HeLa_A485_30min_R1 1 ETDILDDEMPHHDLHSVDSLGTLSSSEGPQSAHLGPFTCHK 41 0 Q68CZ2;E9PCX8 Q68CZ2 TNS3 Tensin-3 1 0 ETDILDDEMPHHDLHS(0.015)VDS(0.052)LGT(0.235)LS(0.05)S(0.502)S(0.146)EGPQSAHLGPFTCHK 91.819 1.64E-05 124280000 23801 30467 25796 16500 42770 27109 39377 36910 30357 30879 TRUE FALSE FALSE 29095.45034 34029.85062 35339.01386 17401.35322 38511.66863 28528.38532 30963.78227 27857.76463 36449.37145 23181.43359 1.255118681 1.467978695 1.52445334 0.750659063 1.661315228 1.230656647 1.335714729 1.201727431 1.572351913 1 14.50068217 -10.08498707 5.188372282 0.999994124 1.32860095 0.144038106 0.243527142 1.57E-05 2.76E-06 0.223068642 0.054101125 8.22E-11 10.08498707 0.328606826 ETDKS(ph)PTSTEPR ddPTM_HeLa_A486_30min_R1 1 ETDKSPTSTEPR 12 1 Q6IQ19-2;Q6IQ19 Q6IQ19-2 CCSAP "Centriole, cilia and spindle-associated protein" 1 0 ET(0.016)DKS(0.69)PT(0.121)S(0.071)T(0.102)EPR 66.387 0.0040812 0 249980 251240 140230 126990 241040 268770 291270 293940 199010 319630 TRUE FALSE FALSE 232457.6929 231330.8274 194530.8115 295639.1377 210806.5156 235611.8901 218391.1653 227016.2787 216260.347 239592.5676 0.970220801 0.965517544 0.811923398 1.233924494 0.879854153 0.983385639 0.911510601 0.947509687 0.902617094 1 17.87022363 ETDLLLDDSLVSIFGNRR ddPTM_HeLa_A485_30min_R1 1 ETDLLLDDSLVSIFGNRR 18 1 P30044-4;P30044-2;P30044-3;P30044 P30044-4 PRDX5 "Peroxiredoxin-5, mitochondrial" 0 0 77.191 0.010001 68703000 27468 35462 36978 30627 39748 44900 50693 46464 33649 44628 FALSE FALSE TRUE 33578.16184 39608.97242 50657.70098 32300.07546 35790.54956 47250.89457 39862.02643 35068.63115 40402.04565 33503.06092 1.002241614 1.182249363 1.512032023 0.964093267 1.068277004 1.410345601 1.189802524 1.04672917 1.205921028 1 15.03200529 -8.562877462 0.773060608 0.999243535 1.189434058 0.089458129 0.165322699 5.013390104 4.631196269 0.187681348 0.059302587 2.74E-09 8.562877462 0.190190522 ETDLLLDDSLVSIFGNRR ddPTM_HeLa_A486_30min_R1 1 ETDLLLDDSLVSIFGNRR 18 1 P30044-4;P30044-2;P30044-3;P30044 P30044-4 PRDX5 "Peroxiredoxin-5, mitochondrial" 0 0 171.78 5.33E-12 51764000 39744 49361 44639 27463 72156 47830 58759 58574 50218 60336 FALSE FALSE TRUE 36958.15084 45449.45459 61924.41627 63935.2519 63105.52165 41929.2209 44056.87671 45237.97886 54570.93667 45227.47288 0.817161528 1.004908117 1.369177014 1.413637505 1.395291791 0.927074148 0.974117586 1.000232292 1.206588235 1 15.46491177 -6.280005333 24.84474857 1.01864917 1.210458381 0.186801339 0.185458143 1430.789299 1914660.457 0.072589843 0.064135561 5.25E-07 6.280005333 0.191809211 ETDLQELFRPFGS(ph)ISR ddPTM_HeLa_A485_30min_R1 3 ETDLQELFRPFGSISR 16 1 K7ENA8;O75821;K7EP16 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 ETDLQELFRPFGS(0.813)IS(0.187)R;ETDLQELFRPFGS(1)ISR;ETDLQELFRPFGS(1)ISR ;; 157.14 7.15E-09 158295000 104622 120596 126921 100461 158273 101756 139483 138360 109858 126677 TRUE FALSE FALSE 127894.803 134698.6532 173874.3595 105948.93 142514.7844 107083.7868 109681.3176 104426.9931 131905.4929 95098.75522 1.34486306 1.416408163 1.828355788 1.114093763 1.49859779 1.126027218 1.153341254 1.09809001 1.387037008 1 16.53713884 -5.959240364 1.294328204 1.157895962 1.486563628 0.341711299 0.191783262 0.502329856 1.754774583 0.080025954 0.094216669 1.10E-06 5.959240364 0.328667666 ETDLQELFRPFGS(ph)ISR ddPTM_HeLa_A486_30min_R1 3 ETDLQELFRPFGSISR 16 1 K7ENA8;O75821;K7EP16 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 ETDLQELFRPFGS(0.95)IS(0.05)R;ETDLQELFRPFGS(0.994)IS(0.006)R;ETDLQELFRPFGS(1)ISR ;; 187.19 3.62E-18 126604000 157068 164145 156181 71459 187336 165106 186993 199256 127886 159958 TRUE FALSE FALSE 146058.3443 151137.5524 216658.4659 166360.1633 163838.572 144736.9004 140205.3736 153889.7585 138971.2614 119903.4756 1.218132698 1.260493506 1.806940664 1.387450718 1.366420541 1.207111801 1.169318678 1.28344702 1.159026131 1 16.87151395 -6.187938896 2.321832811 1.175730512 1.432520398 0.366770495 0.16135592 0.37736547 3.992465595 0.063687216 0.061714769 6.49E-07 6.187938896 0.256789887 ETDPS(ph)PEER ddPTM_HeLa_A485_30min_R1 2 ETDPSPEER 9 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;H0Y482;Q9H4G0-4 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 ET(0.001)DPS(0.999)PEER;ET(0.005)DPS(0.995)PEER ; 115.57 0.00067458 1376060000 3172500 3818200 3242900 3341600 4382700 3919100 4525700 4950000 3620700 4943500 TRUE FALSE FALSE 3878211.68 4264705.276 4442583.658 3524143.147 3946342.999 4124298.016 3558747.223 3736004.739 4347341.279 3711176.428 1.045008707 1.149151855 1.197082312 0.949602697 1.063367122 1.111318229 0.958926985 1.006690146 1.171418649 1 21.82344516 -5.252297796 24.99376126 1.038511414 1.132288042 0.257461332 0.072399939 933.3376801 2551811.207 0.019689866 0.033487651 5.59E-06 5.252297796 0.093776628 ETDPS(ph)PEER ddPTM_HeLa_A486_30min_R1 2 ETDPSPEER 9 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;H0Y482;Q9H4G0-4 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 ET(0.001)DPS(0.999)PEER;ETDPS(1)PEER ; 143.89 0.00010829 992790000 2496900 2807200 2538900 926980 3493400 2867300 2947900 2993100 2637300 3033900 TRUE FALSE FALSE 2321880.204 2584747.248 3522030.074 2158056.287 3055225.197 2513561.679 2210304.24 2311636.469 2865903.287 2274191.693 1.020969433 1.136556455 1.548695339 0.948933326 1.343433453 1.105254973 0.971907622 1.016465092 1.260185453 1 21.11692243 -6.508890585 24.16800949 1.059950144 1.203931888 0.127212513 0.171665993 879.6287865 1519783.578 0.060963909 0.051602973 3.10E-07 6.508890585 0.143981745 ETDPVKS(ph)PPLPEHQK ddPTM_HeLa_A485_30min_R1 2 ETDPVKSPPLPEHQK 15 1 Q96JM3;A0A2R8Y4S6;S4R3K0;A0A2R8Y735 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 ETDPVKS(1)PPLPEHQK;ET(0.004)DPVKS(0.996)PPLPEHQK ; 130.11 1.13E-05 1355650000 730430 459590 351660 1227330 809030 532980 950830 633500 589600 1742880 TRUE FALSE FALSE 892911.6335 513335.0526 481753.6678 1294375.93 728480.1325 560886.0087 747677.4029 478133.1317 707927.3119 1308412.091 0.682439149 0.392334385 0.368197199 0.98927237 0.556766586 0.428676877 0.571438775 0.365430077 0.541058369 1 20.31938557 -10.20739799 5.581253264 1.000017341 0.539969342 0.370636371 0.178212298 3.92E-05 5.57E-06 0.175900279 0.042660478 6.20E-11 10.20739799 -0.460047999 ETDPVKS(ph)PPLPEHQK ddPTM_HeLa_A486_30min_R1 1 ETDPVKSPPLPEHQK 15 1 Q96JM3;A0A2R8Y4S6;S4R3K0;A0A2R8Y735 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 ET(0.001)DPVKS(0.999)PPLPEHQK 144.01 5.26E-08 877860000 462760 434020 212500 270380 377290 598350 747940 625480 354930 773210 TRUE FALSE FALSE 430322.9137 399626.6745 294785.6909 629458.3042 329966.7701 524531.6606 560797.5011 483071.8581 385695.6182 579593.1832 0.742456823 0.689495125 0.508607933 1.086034692 0.569307541 0.904999706 0.967570905 0.833467115 0.665459204 1 19.1446811 -5.243085523 24.99472493 0.848160969 0.6511175 0.284933387 0.154469479 1155.405397 1573456.963 0.040746798 0.070407739 5.71E-06 5.243085523 -0.19704347 ETEAAPTS(ph)PPIVPLK ddPTM_HeLa_A485_30min_R1 1 ETEAAPTSPPIVPLK 15 0 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 ETEAAPT(0.214)S(0.786)PPIVPLK 121.48 5.43E-05 87144000 171580 180020 143670 201230 221500 182760 261040 250710 179450 288290 TRUE FALSE FALSE 209747.3791 201071.773 196819.5116 212222.6854 199446.6823 192329.031 205266.6715 189222.9794 215463.969 216424.6086 0.969147549 0.929061507 0.909413735 0.980584818 0.921552699 0.88866526 0.948444231 0.874313603 0.99556132 1 17.72350502 -7.866254546 9.721981753 0.999511973 0.928077833 0.448091677 0.031142238 0.284348581 24.0439637 0.029191684 0.007542892 1.36E-08 7.866254546 -0.07143414 ETEEQDS(ph)DSAEQGDPAGEGK ddPTM_HeLa_A485_30min_R1 1 ETEEQDSDSAEQGDPAGEGK 20 0 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 ETEEQDS(0.989)DS(0.011)AEQGDPAGEGK 277.59 1.37E-72 369810000 189950 148930 100590 250350 162840 154840 239050 204610 130900 320510 TRUE FALSE FALSE 232203.7222 166346.068 137802.4269 264025.9866 146627.0778 162947.183 187975.0146 154429.0767 157170.4293 240612.7555 0.965051589 0.691343514 0.572714554 1.097306691 0.609390294 0.677217559 0.78123462 0.641815835 0.653209049 1 17.8763536 -4.254127522 23.46707898 0.736011745 0.965051854 0.135243052 0.163140762 713.3885278 2289448.242 0.038889506 0.374831309 5.57E-05 4.254127522 0.229040109 ETEEQDS(ph)DSAEQGDPAGEGK ddPTM_HeLa_A486_30min_R1 2 ETEEQDSDSAEQGDPAGEGK 20 0 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 ETEEQDS(0.939)DS(0.061)AEQGDPAGEGK;ETEEQDS(0.71)DS(0.29)AEQGDPAGEGK ; 268.24 1.84E-59 507840000 419880 396790 234910 168675 326550 480100 527970 441280 384430 597150 TRUE FALSE FALSE 390448.5803 365346.9153 325873.4431 392683.9244 285591.054 420870.1433 395866.3217 340810.1771 417752.7019 447619.7532 0.872277368 0.816199269 0.728013991 0.877271214 0.638021562 0.940240327 0.884380814 0.761383238 0.933275842 1 18.77191418 ETEEQDS(ph)DSAEQGDPAGEGKEVLCDFCLDDTRR ddPTM_HeLa_A486_30min_R1 1 ETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTRR 33 2 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 ETEEQDS(0.951)DS(0.049)AEQGDPAGEGKEVLCDFCLDDTRR 198.82 2.18E-29 445450000 71948 104880 75573 71007 167540 128630 178790 175400 75994 139590 TRUE FALSE FALSE 66904.81674 96568.92683 104836.8895 165307.8845 146525.571 112760.9384 134054.851 135465.249 82581.22111 104635.7554 0.639406831 0.922905621 1.001922231 1.579841268 1.4003394 1.07765207 1.281157195 1.294636316 0.789225641 1 16.6750164 -4.659356489 2.090106256 1.220561121 0.670102411 0.393315404 0.213501456 0.359287079 2.835206959 0.05992576 0.275780488 2.19E-05 4.659356489 -0.55045871 ETERAS(ph)PIK ddPTM_HeLa_A485_30min_R1 5 ETERASPIK 9 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ETERAS(1)PIK;ETERAS(1)PIK;ETERAS(1)PIK;ETERAS(1)PIK;ET(0.106)ERAS(0.894)PIK ;;;; 82.774 0.0030779 31611430000 32910230 24201140 18568380 44760500 30224990 23950160 35396090 27294780 24875120 55479230 TRUE FALSE FALSE 40230997.12 27031252.8 25437596.46 47205652.78 27215683.87 25204153.34 27833426.21 20600692.41 29867328.42 41649278.98 0.965947025 0.649020907 0.610757187 1.133408643 0.6534491 0.605152213 0.668281106 0.494623026 0.717115137 1 25.31178818 ETERAS(ph)PIK ddPTM_HeLa_A486_30min_R1 6 ETERASPIK 9 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ETERAS(1)PIK;ET(0.01)ERAS(0.99)PIK;ETERAS(1)PIK;ETERAS(1)PIK;ET(0.021)ERAS(0.979)PIK;ETERAS(1)PIK ;;;;; 84.169 0.0026227 54805800000 38537500 40692100 20775160 16345200 30176200 41808100 47216300 43104000 33498200 49773000 TRUE FALSE FALSE 35836220.26 37467509.8 28819858.33 38052451.64 26391219.61 36650241.7 35402282.34 33290160.15 36401850.95 37309516.83 0.960511508 1.004234656 0.772453271 1.019912743 0.707358922 0.982329572 0.948880751 0.892269935 0.975672001 1 25.15304034 ETERAS(ph)PIKMDLAPSK ddPTM_HeLa_A485_30min_R1 20 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ET(0.019)ERAS(0.981)PIKMDLAPSK;ET(0.002)ERAS(0.998)PIKMDLAPSK;ET(0.001)ERAS(0.999)PIKMDLAPSK;ET(0.007)ERAS(0.993)PIKMDLAPSK;ET(0.042)ERAS(0.958)PIKMDLAPSK;ET(0.001)ERAS(0.999)PIKMDLAPSK;ET(0.002)ERAS(0.998)PIKMDLAPSK;ET(0.059)ERAS(0.94)PIKMDLAPS(0.001)K;ET(0.037)ERAS(0.963)PIKMDLAPSK;ET(0.208)ERAS(0.792)PIKMDLAPSK;ET(0.044)ERAS(0.956)PIKMDLAPSK;ET(0.486)ERAS(0.514)PIKMDLAPSK;ET(0.317)ERAS(0.683)PIKMDLAPSK;ET(0.206)ERAS(0.794)PIKMDLAPSK;ET(0.183)ERAS(0.817)PIKMDLAPSK;ET(0.047)ERAS(0.953)PIKMDLAPSK;ET(0.306)ERAS(0.694)PIKMDLAPSK;ET(0.023)ERAS(0.977)PIKMDLAPSK;ET(0.033)ERAS(0.967)PIKMDLAPSK;ET(0.194)ERAS(0.806)PIKMDLAPSK ;;;;;;;;;;;;;;;;;;; 168.4 3.20E-12 91843883000 47546090 34165620 24135710 68810210 58593740 49138670 82364260 70466120 43469030 100290020 TRUE FALSE FALSE 58122553.69 38160992.06 33064513.5 72569137.54 52759941.51 51711494.78 64766463 53184193.58 52192865.6 75289563.72 0.771986857 0.506856331 0.439164631 0.963867154 0.700760357 0.686834831 0.860231615 0.706395295 0.693228424 1 26.16594656 -13.99999995 0.085739971 1.930591301 0.444679882 0.303054085 0.140994558 293.0245456 1.756879794 51.0382492 4.033382484 1.00E-14 13.99999995 -1.48591142 ETERAS(ph)PIKMDLAPSK ddPTM_HeLa_A486_30min_R1 21 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ET(0.003)ERAS(0.997)PIKMDLAPSK;ET(0.006)ERAS(0.994)PIKMDLAPSK;ET(0.208)ERAS(0.792)PIKMDLAPSK;ET(0.011)ERAS(0.989)PIKMDLAPSK;ET(0.006)ERAS(0.994)PIKMDLAPSK;ET(0.004)ERAS(0.996)PIKMDLAPSK;ETERAS(1)PIKMDLAPSK;ET(0.171)ERAS(0.829)PIKMDLAPSK;ET(0.359)ERAS(0.641)PIKMDLAPSK;ET(0.359)ERAS(0.641)PIKMDLAPSK;ET(0.154)ERAS(0.846)PIKMDLAPSK;ET(0.019)ERAS(0.981)PIKMDLAPSK;ET(0.089)ERAS(0.911)PIKMDLAPSK;ET(0.133)ERAS(0.867)PIKMDLAPSK;ET(0.032)ERAS(0.968)PIKMDLAPSK;ET(0.318)ERAS(0.682)PIKMDLAPSK;ET(0.013)ERAS(0.987)PIKMDLAPSK;ET(0.142)ERAS(0.858)PIKMDLAPSK;ET(0.132)ERAS(0.868)PIKMDLAPSK;ET(0.001)ERAS(0.999)PIKMDLAPSK;ET(0.077)ERAS(0.923)PIKMDLAPSK ;;;;;;;;;;;;;;;;;;;; 174.91 1.12E-12 58430510000 36149890 30911470 15003820 19244260 31752240 37151690 52435830 49404020 25065500 48949690 TRUE FALSE FALSE 33615969.39 28461932.54 20813700.92 44801609.83 27769577.98 32568292.22 39315830.72 38155803.13 27238197.72 36692369.01 0.916156964 0.775690785 0.567248763 1.221006194 0.756821615 0.887603965 1.071498837 1.039883882 0.742339578 1 25.12897672 -5.247035155 24.99685296 0.954719619 0.755298065 0.268467974 0.156293524 1135.901574 1971222.196 0.041844158 0.072059206 5.66E-06 5.247035155 -0.199421554 ETES(ph)APGS(ph)PR ddPTM_HeLa_A485_30min_R1 8 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 2 0 ETES(1)APGS(1)PR;ET(0.006)ES(0.994)APGS(1)PR;ET(0.012)ES(0.988)APGS(1)PR;ET(0.01)ES(0.99)APGS(1)PR;ET(0.012)ES(0.988)APGS(1)PR;ET(0.172)ES(0.828)APGS(1)PR;ETES(1)APGS(1)PR;ETES(1)APGS(1)PR ;;;;;;; 195.16 3.59E-10 49846860000 21158033 24956918 22691775 21159697 29191873 23694276 29709239 31758801 21018128 27129152 TRUE FALSE FALSE 25864564.45 27875412.46 31086406.86 22315597.67 26285427.63 24934871.65 23361617.39 23969905.26 25236273.5 20366353.68 1.269965397 1.368699223 1.526360945 1.095709032 1.290630028 1.224316932 1.147069218 1.176936512 1.239115941 1 24.27968437 -1.813841085 0.041806719 0.339430493 2.635834671 0.464101822 0.101681985 535.7750634 1.967225934 31.15484782 91.1676896 0.015351786 1.813841085 2.296404178 ETES(ph)APGS(ph)PR ddPTM_HeLa_A486_30min_R1 9 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 2 0 ET(0.002)ES(0.998)APGS(1)PR;ET(0.001)ES(0.999)APGS(1)PR;ET(0.004)ES(0.996)APGS(1)PR;ET(0.045)ES(0.955)APGS(1)PR;ET(0.004)ES(0.996)APGS(1)PR;ET(0.003)ES(0.997)APGS(1)PR;ETES(1)APGS(1)PR;ETES(1)APGS(1)PR;ET(0.001)ES(0.999)APGS(1)PR ;;;;;;;; 220.34 1.25E-16 52400621000 27751720 31525540 23845120 10092382 34484570 27276620 31544160 32266010 24447140 28415180 TRUE FALSE FALSE 25806467.74 29027341.4 33078589.06 23495575.34 30159193.67 23911507.95 23651477.53 24919743.89 26566237.78 21299833.98 1.211580699 1.362796603 1.552997507 1.103087252 1.415935622 1.122614757 1.110406661 1.169950147 1.247250932 1 24.34433885 -6.274519032 24.68767085 1.139439004 1.331004134 0.386438692 0.125234483 746.7155128 1409410.818 0.043351641 0.038462322 5.31E-07 6.274519032 0.19156513 ETES(ph)APGSPR ddPTM_HeLa_A486_30min_R1 1 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 ET(0.004)ES(0.995)APGSPR 140.63 1.19E-05 828050000 486230 590340 620520 265480 806730 625590 668270 682670 577010 565990 TRUE FALSE FALSE 452147.7879 543559.3084 860801.9621 618050.8566 705542.4009 548411.0663 501061.7778 527240.9436 627025.6914 424262.42 1.065726698 1.281186555 2.028937567 1.4567655 1.662985849 1.292622303 1.181018526 1.242723651 1.477919471 1 18.69459737 -6.412351293 6.355835616 1.244511041 1.513296765 0.204057723 0.257719556 0.425755027 21.33520472 0.095204523 0.083518806 3.87E-07 6.412351293 0.268785724 ETESAPGS(ph)PR ddPTM_HeLa_A485_30min_R1 12 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETES(0.004)APGS(0.995)PR;ETES(0.001)APGS(0.999)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETES(0.004)APGS(0.996)PR;ETESAPGS(1)PR;ETES(0.473)APGS(0.527)PR;ETESAPGS(1)PR;ET(0.017)ES(0.476)APGS(0.507)PR ;;;;;;;;;;; 222.91 4.87E-17 29507742000 9611008 14469963 14272288 10561496 16871880 14192014 14792532 15861450 14220857 15806835 TRUE FALSE FALSE 11748943.57 16162099.3 19552201.25 11138443.78 15192056.39 14935085.91 11631986.69 11971404.52 17074852.56 11866481.94 0.990094927 1.361995862 1.647683058 0.938647515 1.2802494 1.258594248 0.980238857 1.008841928 1.438914469 1 23.50038895 -5.284071313 24.98491694 1.135182677 1.336131879 0.164265675 0.210445366 1423.923943 1571962.444 0.059397108 0.088173438 5.20E-06 5.284071313 0.200949201 ETESAPGS(ph)PR ddPTM_HeLa_A486_30min_R1 10 ETESAPGSPR 10 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETES(0.002)APGS(0.998)PR;ETES(0.001)APGS(0.999)PR;ETESAPGS(1)PR;ETESAPGS(1)PR ;;;;;;;;; 203.78 7.32E-14 28729370000 11139847 11680981 9701706 3729417 13931356 10625817 11241764 11966983 10168876 11534320 TRUE FALSE FALSE 10359001.25 10755337.52 13458466.38 8682271.25 12183955.43 9314911.734 8428955.744 9242362.208 11050322.36 8646051.196 1.198119351 1.2439595 1.556602671 1.004189202 1.40919307 1.077360233 0.974890797 1.068969174 1.278077368 1 23.04360995 -6.290050763 22.84594375 1.077609422 1.280052357 0.304540442 0.153006554 319.1335979 254823.5659 0.052711763 0.04650173 5.13E-07 6.290050763 0.202442935 ETFAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_A485_30min_R1 2 ETFASDTNEALASLDESQEGHAEAK 25 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 ETFAS(0.986)DT(0.014)NEALASLDESQEGHAEAK;ETFAS(1)DTNEALASLDESQEGHAEAK ; 313.84 1.76E-105 439360000 144097 158954 127756 167887 148324 134977 189200 164492 128584 221850 TRUE FALSE FALSE 176150.8805 177542.2876 175018.2608 177058.2417 133556.3418 142044.187 148775.8744 124150.0791 154389.6294 166546.8778 1.057665462 1.066019909 1.050864856 1.063113545 0.801914413 0.852878114 0.893297288 0.745436244 0.927004044 1 17.34556878 -5.752285595 24.99284636 0.857660097 1.059276917 0.668515582 0.064959562 103.5370878 282688.9601 0.018099286 0.023030703 1.77E-06 5.752285595 0.201616819 ETFAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_A486_30min_R1 3 ETFASDTNEALASLDESQEGHAEAK 25 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 ETFAS(0.999)DT(0.001)NEALASLDESQEGHAEAK;ET(0.003)FAS(0.997)DTNEALASLDESQEGHAEAK;ET(0.06)FAS(0.936)DT(0.004)NEALASLDESQEGHAEAK ;; 370.13 1.78E-156 377951000 269816 287332 152446 53480 234944 284400 280194 270376 239410 284788 TRUE FALSE FALSE 250903.2917 264562.7659 211477.1738 124504.1427 205475.1328 249313.6196 210086.4976 208817.2871 260162.2516 213475.2311 1.175327416 1.239313641 0.990640332 0.583225239 0.962524466 1.167880781 0.98412587 0.9781804 1.218699941 1 17.70370916 -4.774942216 13.18681055 0.976113373 1.207332893 0.235336603 0.159080413 1.172985403 1147.003471 0.04447156 0.095850671 1.68E-05 4.774942216 0.23121952 ETFASDTNEALASLDES(ph)QEGHAEAK ddPTM_HeLa_A485_30min_R1 1 ETFASDTNEALASLDESQEGHAEAK 25 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 ETFASDTNEALASLDES(1)QEGHAEAK 214.99 5.31E-30 934520000 103950 110020 76381 138240 106090 144380 141890 104670 97134 202030 TRUE FALSE FALSE 127073.3189 122885.882 104637.5104 145791.7012 95527.3071 151939.5135 111574.0424 78999.51838 116627.9028 151667.6391 0.837840687 0.810231389 0.689913227 0.961257801 0.629846338 1.001792567 0.73564831 0.520872606 0.768970253 1 17.21055377 -6.977960351 24.9888076 0.71260481 0.817555648 0.013084592 0.151367218 548.5097193 621905.4873 0.059595127 0.040175833 1.05E-07 6.977960351 0.104950838 ETFASDTNEALASLDES(ph)QEGHAEAK ddPTM_HeLa_A486_30min_R1 1 ETFASDTNEALASLDESQEGHAEAK 25 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 ETFASDTNEALAS(0.155)LDES(0.845)QEGHAEAK 51.938 0.0059476 0 151980 151520 90276 92180 133630 167920 205990 176160 119050 216570 TRUE FALSE FALSE 141326.9868 139513.0034 125233.2849 214599.6985 116868.8793 147203.7377 154449.1233 136052.2135 129369.3499 162339.4624 0.870564586 0.859390572 0.771428481 1.321919485 0.719904314 0.90676497 0.95139605 0.838072343 0.796906359 1 17.30865422 -7.269647517 24.16030349 0.863117022 0.914750507 0.007994111 0.159519479 2251.59492 6627405.943 0.083816767 0.041429759 5.37E-08 7.269647517 0.051633485 ETFS(ph)SAEGTVDKDTTIMELR ddPTM_HeLa_A485_30min_R1 2 ETFSSAEGTVDKDTTIMELR 20 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 ET(0.028)FS(0.943)S(0.028)AEGT(0.002)VDKDTTIMELR;ET(0.004)FS(0.876)S(0.12)AEGT(0.001)VDKDTTIMELR ; 131.37 2.04E-07 679670000 311722 297641 257949 350389 393970 345201 556700 572060 331126 474570 TRUE FALSE FALSE 381063.4835 332447.5258 353375.0693 369529.8638 354744.9635 363275.1906 437756.4972 431761.388 397579.9509 356268.4328 1.069596541 0.933137756 0.991878698 1.037223144 0.995723816 1.019667074 1.228726592 1.211899086 1.115956156 1 18.44260513 -6.671052583 7.197700545 1.156346911 1.003342506 0.470932194 0.067208098 0.168780725 11.42452087 0.024924086 0.01920282 2.13E-07 6.671052583 -0.153004404 ETFS(ph)SAEGTVDKDTTIMELR ddPTM_HeLa_A486_30min_R1 1 ETFSSAEGTVDKDTTIMELR 20 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 ETFS(0.984)S(0.015)AEGTVDKDTTIMELR 215.42 2.48E-29 652620000 113030 143340 78893 62325 150420 146980 198830 189120 118550 182470 TRUE FALSE FALSE 105107.1807 131981.2164 109442.4824 145095.7497 131552.921 128847.102 149080.631 146061.5045 128826.0095 136778.3243 0.768449103 0.964927864 0.800144928 1.060809529 0.961796554 0.942014041 1.089943394 1.067870258 0.941859831 1 17.06148009 -2.894992359 0.450274742 1.024082009 0.083903252 0.478363329 0.073374047 13.74032064 0.828494611 0.046524901 8.951538753 0.001273525 2.894992359 -0.940178757 ETFSS(ph)AEGTVDKDTTIMELR ddPTM_HeLa_A486_30min_R1 1 ETFSSAEGTVDKDTTIMELR 20 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 ETFS(0.318)S(0.682)AEGTVDKDTTIMELR 257.66 5.97E-59 573660000 360370 405010 268970 206270 440930 470750 509440 551340 341840 522640 TRUE FALSE FALSE 335109.924 372915.5326 373122.3873 480206.9843 385624.4479 412673.6512 381972.7237 425811.9177 371470.9664 391767.5422 0.855379499 0.951879603 0.952407607 1.225744689 0.984319543 1.053363556 0.974998392 1.086899428 0.948192299 1 18.57963835 -4.708193599 2.271148818 1.039048964 0.875639237 0.336355446 0.077412776 0.353625963 3.456384447 0.020634454 0.079777985 1.96E-05 4.708193599 -0.163409727 ETFVLKDS(ph)PVRDLLPTVNSLTR ddPTM_HeLa_A485_30min_R1 1 ETFVLKDSPVRDLLPTVNSLTR 22 2 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 ETFVLKDS(1)PVRDLLPTVNSLTR 161.24 4.66E-14 117390000 53361 49136 39618 74046 73785 54083 78549 78017 54867 102140 TRUE FALSE FALSE 65230.97036 54882.02777 54274.34684 78090.94549 66438.70633 56914.70225 61766.36446 58883.20842 65878.30363 76678.37775 0.850708795 0.715743204 0.707818142 1.018421983 0.866459467 0.7422523 0.805525186 0.767924546 0.859150983 1 16.22653219 -8.068371971 6.613997064 0.999996505 0.809504292 0.308690712 0.086018004 0.985899456 94.06852189 0.087258749 0.022611931 8.54E-09 8.068371971 -0.190492213 ETFVLKDS(ph)PVRDLLPTVNSLTR ddPTM_HeLa_A486_30min_R1 2 ETFVLKDSPVRDLLPTVNSLTR 22 2 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 ETFVLKDS(1)PVRDLLPTVNSLTR;ETFVLKDS(1)PVRDLLPTVNSLTR ; 180.71 9.11E-20 159043000 147566 158525 90642 77770 143710 166089 192024 169392 128518 188285 TRUE FALSE FALSE 137222.3854 145962.9017 125741.0099 181052.4903 125684.5518 145598.6278 143977.5642 130825.1394 139658.0437 141137.2105 0.972262276 1.034191488 0.890913243 1.28281188 0.89051322 1.031610497 1.020124769 0.926935845 0.989519654 1 17.10673888 -7.217988317 22.36408997 0.968670793 1.019127832 0.037876271 0.104042339 470.475315 242151.0615 0.047128481 0.027209044 6.05E-08 7.217988317 0.050457039 ETGEHLVHVK ddPTM_HeLa_A485_30min_R1 3 ETGEHLVHVK 10 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 0 ;; ;; 123.63 0.0009942 346093000 127773 120845 115497 139925 159805 142011 166561 156363 125134 197584 FALSE FALSE TRUE 156195.663 134976.7715 158224.1465 147568.7484 143894.2531 149446.4764 130973.8817 118014.7291 150247.246 148329.9451 1.053028523 0.909976549 1.066704005 0.99486822 0.970095776 1.007527349 0.882990158 0.795623089 1.01292592 1 17.17845035 -6.756491861 24.99908278 0.905853377 0.997647547 0.210948742 0.070276633 157.5679344 796171.5425 0.026294872 0.019718217 1.75E-07 6.756491861 0.09179417 ETGEHLVHVK ddPTM_HeLa_A486_30min_R1 2 ETGEHLVHVK 10 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 0 ; ; 114.4 0.0010509 493670000 485970 559690 375770 188877 745470 545830 573400 603850 487880 600720 FALSE FALSE TRUE 451906.0126 515338.126 521278.2075 439715.2013 651966.2014 478491.0442 429929.2552 466366.537 530169.8312 450295.802 1.003575895 1.14444355 1.157635059 0.976503 1.447862046 1.062614935 0.954770738 1.035689284 1.177381243 1 18.7805135 -6.499764202 24.96944154 1.03975699 1.148955846 0.130539273 0.129644199 1561.134225 1686415.756 0.045717092 0.040046662 3.16E-07 6.499764202 0.109198856 ETGEHLVHVK(ac)K ddPTM_HeLa_A485_30min_R1 2 ETGEHLVHVKK 11 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 1 ; ETGEHLVHVK(1)K;ETGEHLVHVK(1)K 158.31 3.56E-06 49485000 42595 54668 64392 42674 63257 61698 90911 100539 48031 78207 FALSE TRUE FALSE 52070.1108 61060.94705 88213.28037 45005.17256 56958.91097 64928.41188 71487.12218 75881.65261 57670.38113 58711.43419 0.886881942 1.040017978 1.502488937 0.766548683 0.970150223 1.105890407 1.217601361 1.292451013 0.982268308 1 15.84135388 -6.516456122 23.47858486 1.149493212 1.044167967 0.038012083 0.19818006 458.9636874 1677818.604 0.07558736 0.060831841 3.04E-07 6.516456122 -0.105325246 ETGEHLVHVK(ac)K ddPTM_HeLa_A486_30min_R1 2 ETGEHLVHVKK 11 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 1 ; ETGEHLVHVK(1)K;ETGEHLVHVK(1)K 135.66 0.00024328 24164000 25706.6 24378.3 25584.4 12010.8 32806 26677 34234 36091 21978.7 39157 FALSE TRUE FALSE 23904.70009 22446.47472 35491.36485 27961.74939 28691.16558 23385.86297 25668.29111 27873.86716 23883.83141 29351.83233 0.814419346 0.764738449 1.209170332 0.952640676 0.977491465 0.796742865 0.874503875 0.949646579 0.813708362 1 14.84116295 -6.214344666 24.97799412 0.882996966 0.948996126 0.049350423 0.12289117 1352.99603 717598.6821 0.042112466 0.042112366 6.10E-07 6.214344666 0.065999161 ETGLSYTEDDKKAS(ph)PEHR ddPTM_HeLa_A486_30min_R1 1 ETGLSYTEDDKKASPEHR 18 2 Q13415 Q13415 ORC1 Origin recognition complex subunit 1 1 0 ETGLSYTEDDKKAS(0.999)PEHR 54.235 0.01579 363030000 292080 221760 76498 303590 247420 419750 592110 520470 181590 699260 TRUE FALSE FALSE 271606.7003 204186.93 106120.0743 706772.8626 216386.2765 367965.5127 443957.8153 401970.3428 197330.3674 524160.7446 0.51817444 0.389550214 0.202457119 1.348389535 0.41282427 0.702008909 0.846987913 0.766883722 0.376469183 1 18.99964979 ETGTDGILAGS(ph)QEHDPGQGSSSPEQAGSPTEGEGVSTWESFKR ddPTM_HeLa_A485_30min_R1 1 ETGTDGILAGSQEHDPGQGSSSPEQAGSPTEGEGVSTWESFKR 43 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 ETGTDGILAGS(1)QEHDPGQGSSSPEQAGSPTEGEGVSTWESFKR 150.2 3.19E-11 266840000 21773 32988 25223 29754 28076 34662 35659 38443 32089 55633 TRUE FALSE FALSE 26616.32873 36845.65964 34554.03732 31379.38568 25280.65486 36476.84872 28040.16334 29014.79397 38528.96796 41764.71695 0.637292209 0.882219786 0.82734997 0.751337204 0.605311294 0.873389104 0.671384015 0.694720235 0.922524341 1 15.34999704 -7.907778894 4.526198515 0.997350138 0.74850497 0.489280905 0.090528913 0.164447261 5.502793582 0.086623973 0.022713278 1.24E-08 7.907778894 -0.248845168 ETIELS(ph)PTGRPK ddPTM_HeLa_A485_30min_R1 4 ETIELSPTGRPK 12 1 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5 A0A087WSW7 HELLS Lymphoid-specific helicase 1 0 ETIELS(0.998)PT(0.002)GRPK;ETIELS(0.999)PT(0.001)GRPK;ETIELS(0.999)PT(0.001)GRPK;ETIELS(1)PTGRPK ;;; 136.17 6.78E-06 993530000 1709830 1406680 1009150 2194490 1582410 1423780 1833600 1640700 1213610 2801870 TRUE FALSE FALSE 2090175.785 1571178.99 1382476.579 2314369.432 1424859.704 1498326.919 1441836.381 1238315.752 1457170.395 2103415.374 0.993705671 0.74696563 0.657253245 1.100291203 0.677402914 0.712330497 0.68547392 0.588716698 0.692763975 1 21.00430234 ETIELS(ph)PTGRPK ddPTM_HeLa_A486_30min_R1 3 ETIELSPTGRPK 12 1 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5 A0A087WSW7 HELLS Lymphoid-specific helicase 1 0 ETIELS(0.978)PT(0.022)GRPK;ETIELS(0.975)PT(0.025)GRPK;ETIELS(0.893)PT(0.107)GRPK ;; 130.95 1.34E-05 1155540000 1464170 1350270 679550 540435 1033457 1450550 1626870 1412840 1083608 1876060 TRUE FALSE FALSE 1361539.244 1243269.688 942689.959 1258159.992 903831.1865 1271595.889 1219809.919 1091167.174 1177536.014 1406282.365 0.968183402 0.884082542 0.670341876 0.894670959 0.642709607 0.904225155 0.867400423 0.775923244 0.837339672 1 20.42345487 -8.048822022 20.9184022 1.000000002 0.821853286 0.217507009 0.098287739 2340.703376 1002904.433 0.092778583 0.023955327 8.94E-09 8.048822022 -0.178146715 ETIEQEK(ac)R ddPTM_HeLa_A485_30min_R1 2 ETIEQEKR 8 1 P63313 P63313 TMSB10 Thymosin beta-10 0 1 ; ETIEQEK(1)R;ETIEQEK(1)R 176.44 5.83E-06 118386000 60208 71379 153793 91079 92334 72990 150602 109772 78960 225320 FALSE TRUE FALSE 73601.06188 79726.15314 210687.4306 96054.41515 83140.90276 76811.64354 118424.6524 82850.24488 94806.54774 169151.8707 0.435118226 0.471328829 1.24555188 0.567859018 0.491516307 0.454098694 0.70010844 0.489797982 0.560481816 1 17.36795961 -10.59821371 6.299373345 1.001154568 0.607877786 0.215426363 0.227728995 0.003826195 0.000244042 0.228472493 0.055265585 2.52E-11 10.59821371 -0.393276782 ETIEQEK(ac)R ddPTM_HeLa_A486_30min_R1 2 ETIEQEKR 8 1 P63313 P63313 TMSB10 Thymosin beta-10 0 1 ; ETIEQEK(1)R;ETIEQEK(1)R 197.5 1.85E-09 121729000 66866 81243 141875 30584 83163 87895 133433 114286 75466 183486 FALSE TRUE FALSE 62179.0387 74805.0088 196812.7995 71201.09763 72731.92108 77051.40855 100046.6521 88265.57265 82007.45364 137539.9113 0.452079968 0.543878559 1.430950461 0.517675902 0.528805933 0.560211271 0.727400877 0.641745162 0.596244776 1 17.06949079 -12.32013134 7.941545144 0.895340117 0.692990226 0 0.284183748 0 0 0 0.065170363 4.78E-13 12.32013134 -0.20234989 ETIEQEKR ddPTM_HeLa_A485_30min_R1 5 ETIEQEKR 8 1 P63313 P63313 TMSB10 Thymosin beta-10 0 0 ;;;; ;;;; 154.35 0.00012575 1872883000 1339438 1394118 1161413 1737580 1825760 1444674 1999170 1748930 1327250 2266000 FALSE FALSE TRUE 1637391.362 1557147.973 1591067.999 1832499.596 1643980.924 1520314.897 1572030.998 1320002.175 1593616.901 1701127.903 0.962532776 0.915362079 0.935301806 1.077226229 0.966406418 0.893709929 0.924110994 0.775957042 0.936800166 1 20.69806019 -6.25106155 6.110463964 0.893027994 0.972408738 0.183013137 0.066152697 0.238690775 40.05136375 0.022806697 0.021760077 5.61E-07 6.25106155 0.079380744 ETIEQEKR ddPTM_HeLa_A486_30min_R1 4 ETIEQEKR 8 1 P63313 P63313 TMSB10 Thymosin beta-10 0 0 ;;; ;;; 102.07 0.0045705 1796720000 2010030 1729550 1224640 947790 2424320 2122440 2394700 2189570 1625470 2447760 FALSE FALSE TRUE 1869137.277 1592494.159 1698853.405 2206503.019 2120239.18 1860594.932 1795520.731 1691052.709 1766367.048 1834824.964 1.018700592 0.867927018 0.925893989 1.202568671 1.15555392 1.014044919 0.978578757 0.921642523 0.962689675 1 20.80721101 -9.999771207 11.59087232 1.000002276 1.006147353 0.000192197 0.09821341 0 0 0.10661314 0.025857484 1.00E-10 9.999771207 0.006145076 ETIHLPAS(ph)SPHPPPFP ddPTM_HeLa_A485_30min_R1 2 ETIHLPASSPHPPPFP 16 0 Q5SZC3;Q5SZC6;Q9Y2T3-3 Q5SZC3 GDA 1 0 ETIHLPAS(0.914)S(0.086)PHPPPFP;ETIHLPAS(0.555)S(0.445)PHPPPFP ; 123.97 1.81E-05 181034000 79553 118065 123165 69037 133951 101469 111813 119602 95386 104418 TRUE FALSE FALSE 97249.2904 131871.6747 168728.8588 72808.3165 120614.3681 106781.7599 87923.23912 90269.42197 114529.0953 78388.51427 1.240606373 1.682283125 2.152469152 0.928813579 1.538673991 1.36221181 1.121634208 1.151564394 1.461044342 1 16.25835466 -5.27323946 24.99717697 1.244412989 1.690835939 0.380083524 0.273187974 792.1597918 1678102.181 0.076625787 0.114672377 5.33E-06 5.27323946 0.44642295 ETIHLPASS(ph)PHPPPFP ddPTM_HeLa_A486_30min_R1 3 ETIHLPASSPHPPPFP 16 0 Q5SZC3;Q5SZC6;Q9Y2T3-3 Q5SZC3 GDA 1 0 ETIHLPAS(0.029)S(0.971)PHPPPFP;ETIHLPAS(0.327)S(0.673)PHPPPFP;ETIHLPAS(0.129)S(0.871)PHPPPFP ;; 162.81 5.14E-12 300368000 172142 201202 182142 41501.2 246556 170196 199520 196005 158201 169479 TRUE FALSE FALSE 160075.7347 185258.0208 252672.2603 96616.89095 215630.6474 149198.9479 149597.9857 151378.9403 171913.9901 127040.3553 1.260038469 1.458261199 1.988913364 0.760521259 1.69733977 1.174421684 1.177562715 1.191581525 1.353223467 1 16.95492733 -6.046971501 0.743403138 1.170511373 1.488721088 0.124088774 0.308297698 1.541933884 1.896464148 0.198323061 0.247321917 8.97E-07 6.046971501 0.318209715 ETLVYLTHLDYVDTER ddPTM_HeLa_A485_30min_R1 1 ETLVYLTHLDYVDTER 16 0 O14980 O14980 XPO1 Exportin-1 0 0 73.983 0.024237 36103000 13168 28557 24509 14021 25885 23444 28461 26995 26036 23078 FALSE FALSE TRUE 16097.17617 31896.49274 33575.899 14786.93173 23307.79851 24671.49159 22380.07485 20374.43392 31261.18638 17325.07932 0.929125684 1.841058973 1.937993956 0.853498645 1.345321316 1.424033399 1.291773298 1.176008118 1.804389221 1 14.08057434 -5.250550275 24.98866544 1.288425327 1.596559426 0.132785896 0.345640014 1455.875789 3340984.76 0.092239953 0.157847159 5.62E-06 5.250550275 0.308134099 ETLVYLTHLDYVDTER ddPTM_HeLa_A486_30min_R1 1 ETLVYLTHLDYVDTER 16 0 O14980 O14980 XPO1 Exportin-1 0 0 68.481 0.033366 46656000 14681 18146 24927 6991.1 28197 15227 17036 21394 14704 16092 FALSE FALSE TRUE 13651.93771 16708.04487 34579.40197 16275.63411 24660.26933 13348.44756 12773.41261 16523.05323 15978.55456 12062.45846 1.131770755 1.385127661 2.866696046 1.349280013 2.0443817 1.106610862 1.058939407 1.369791513 1.324651572 1 13.55823635 -6.273219229 24.64727957 1.1880444 1.77404846 0.285574081 0.460599713 868.8620683 1817936.625 0.16426046 0.146041322 5.33E-07 6.273219229 0.58600406 ETMQSLNDR ddPTM_HeLa_A485_30min_R1 4 ETMQSLNDR 9 0 P05783;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;Q92764 P05783 KRT18;KRT35 "Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5" 0 0 ;;; ;;; 156.18 2.01E-05 987860000 345591 438671 441973 357636 470623 381428 461243 443447 417950 488075 FALSE FALSE TRUE 422466.5257 489969.7575 605477.2047 377172.7491 423766.1217 401398.9803 362694.665 334690.928 501828.7313 366406.8849 1.152998328 1.337228578 1.652472237 1.029382265 1.156545194 1.095500649 0.989868586 0.913440609 1.369594165 1 18.48308709 -5.296438786 24.91420446 1.075764522 1.37653274 0.421172094 0.162026158 534.9001238 380765.5968 0.045400828 0.067343441 5.05E-06 5.296438786 0.300768219 ETMQSLNDR ddPTM_HeLa_A486_30min_R1 3 ETMQSLNDR 9 0 P05783;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;Q92764 P05783 KRT18;KRT35 "Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5" 0 0 ;; ;; 153.24 0.00070139 1153340000 639600 676740 519090 186213 778930 665280 754430 738540 587720 711330 FALSE FALSE TRUE 594767.3429 623112.6578 720095.5497 433513.2747 681229.3362 583204.5177 565663.6345 570390.5642 638664.0428 533208.338 1.115450192 1.168610116 1.350495666 0.813027936 1.277604433 1.093764812 1.060867946 1.069733017 1.197775798 1 19.02433982 -7.175574769 0.01544323 8.56E-07 2.202809262 0.067523876 0.137062919 1315.74957 18.42894846 1300.115663 1323.653389 6.67E-08 7.175574769 2.202808406 ETNLDS(ph)LPLVDTHSK ddPTM_HeLa_A485_30min_R1 6 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 1 0 ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK ;;;;; 277.25 2.05E-58 6290530000 4985940 3511320 3275780 5857700 4953610 3805040 5742450 4434200 3897380 7371270 TRUE FALSE FALSE 6095045.152 3921938.33 4487627.339 6177691.319 4460411.195 4004266.011 4515528.646 3346705.497 4679548.417 5533748.047 1.101431634 0.708730917 0.810956209 1.116366569 0.806037998 0.723608299 0.815998236 0.604780967 0.845638142 1 22.39982553 -5.978903234 24.96230054 0.77336118 0.915909246 0.153201432 0.1475945 415.7295473 491900.6242 0.044813463 0.050809153 1.05E-06 5.978903234 0.142548066 ETNLDS(ph)LPLVDTHSK ddPTM_HeLa_A486_30min_R1 5 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 1 0 ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK;ETNLDS(1)LPLVDTHSK ;;;; 248.46 8.53E-42 8003270000 7739920 8147320 5109170 3079810 7504700 9058750 10212750 9859040 7800870 9612300 TRUE FALSE FALSE 7197391.577 7501696.691 7087577.452 7169953.325 6563390.547 7941173.528 7657411.931 7614351.813 8477055.693 7205317.514 0.998899988 1.041133396 0.983659282 0.995091932 0.910909274 1.102126799 1.062744552 1.056768393 1.17649995 1 22.78063058 -6.287282417 24.94865339 1.08212076 0.989387003 0.456085793 0.051050927 701.7519264 677462.8494 0.017651571 0.015572497 5.16E-07 6.287282417 -0.092733757 ETNLDS(ph)LPLVDTHSKR ddPTM_HeLa_A485_30min_R1 4 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 1 0 ETNLDS(1)LPLVDTHSKR;ETNLDS(0.998)LPLVDT(0.002)HSKR;ETNLDS(1)LPLVDTHSKR;ETNLDS(1)LPLVDTHSKR ;;; 146.89 4.05E-08 5901060000 3743420 4362000 3184960 3043900 5266380 4987990 6661050 8315910 3390970 4344220 TRUE FALSE FALSE 4576130.864 4872097.956 4363209.241 3210180.549 4742040.716 5249153.444 5237862.252 6276420.034 4071506.575 3261285.903 1.403167646 1.493919301 1.337880017 0.984329692 1.454040172 1.609534889 1.606072699 1.924523093 1.248435953 1 21.63700949 -5.991232721 24.99181314 1.542215077 1.308003698 0.065701683 0.26160099 384.1890113 1095152.724 0.079808877 0.09035893 1.02E-06 5.991232721 -0.23421138 ETNLDS(ph)LPLVDTHSKR ddPTM_HeLa_A486_30min_R1 6 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 1 0 ET(0.004)NLDS(0.995)LPLVDTHSKR;ETNLDS(1)LPLVDTHSKR;ETNLDS(0.997)LPLVDT(0.003)HSKR;ETNLDS(1)LPLVDTHSKR;ETNLDS(1)LPLVDTHSKR;ETNLDS(1)LPLVDTHSKR ;;;;; 174 1.17E-12 6335030000 4087790 3547010 2622560 1540504 4488320 3372100 4736210 4888970 2800940 4941530 TRUE FALSE FALSE 3801257.03 3265932.01 3638085.467 3586371.165 3925353.054 2956084.587 3551160.163 3775858.256 3043727.734 3704138.724 1.026218863 0.881698082 0.982167715 0.968206493 1.059720854 0.798049103 0.958700639 1.019362 0.821709974 1 21.8207067 -6.224280039 24.99974739 0.923220274 0.977005984 0.140810553 0.077987645 1405.661404 945689.8469 0.025196331 0.025195802 5.97E-07 6.224280039 0.05378571 ETNLDSLPLVDT(ph)HSKR ddPTM_HeLa_A486_30min_R1 1 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 1 0 ETNLDSLPLVDT(0.5)HS(0.5)KR 75.463 0.0053054 79162000 120900 124850 82452 84142 126420 137540 186340 175410 111440 201100 TRUE FALSE FALSE 112425.5343 114956.4313 114379.6225 195886.8283 110563.2248 120571.7132 139715.7611 135472.9722 121099.7089 150743.2511 0.745808078 0.762597533 0.758771101 1.299473289 0.733453896 0.799848168 0.926845879 0.898700083 0.803350784 1 17.20173389 -5.068364545 24.99999099 0.915465639 0.755801494 0.214291153 0.146365981 274.1554821 100254.1092 0.039820822 0.068971743 8.54E-06 5.068364545 -0.159664145 ETNLDSLPLVDTHSK ddPTM_HeLa_A485_30min_R1 1 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 0 0 153.72 2.95E-07 52265000 15115 11508 14431 16570 20773 12977 20476 17315 16467 25675 FALSE FALSE TRUE 18477.2796 12853.76049 19769.62742 17475.17714 18704.76718 13656.45565 16101.13533 13068.4691 19771.77586 19274.69501 0.958628896 0.666872315 1.025677834 0.906638322 0.970431292 0.708517341 0.835350978 0.678011719 1.025789297 1 14.23442041 -3.935513555 21.60579934 0.858882228 3.42571829 0.034029252 0.135300434 2347.6557 919988.1123 0.031455198 48874.76532 0.000116008 3.935513555 2.566836062 ETNLDSLPLVDTHSK ddPTM_HeLa_A486_30min_R1 1 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 0 0 147.64 2.37E-07 179170000 466950 535830 353230 238550 704580 542210 579690 591670 448880 553630 FALSE FALSE TRUE 434219.2163 493368.8793 490010.1158 555356.4556 616205.0065 475317.643 434645.4307 456959.6571 487789.2798 414997.4445 1.046317808 1.188847994 1.180754538 1.338216567 1.484840484 1.145350771 1.047344837 1.101114388 1.175403093 1 18.66274293 -6.511169474 24.84330282 1.090385469 1.252747126 0.322543361 0.11420008 703.2934729 1492168.3 0.044969323 0.037495908 3.08E-07 6.511169474 0.162361657 ETNLDSLPLVDTHSK(ac)R ddPTM_HeLa_A485_30min_R1 2 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 0 1 ; ETNLDSLPLVDTHSK(1)R;ETNLDSLPLVDTHSK(1)R 260.65 3.43E-42 78719000 42068 68221 113940 46612 76186 73785 111570 115776 56865 104722 FALSE TRUE FALSE 51425.88147 76198.85251 156091.1474 49158.29553 68600.65433 77648.26851 87732.15806 87381.75447 68277.2839 78616.73267 0.654134047 0.969244713 1.985469787 0.625290493 0.8725961 0.987681196 1.11594765 1.111490538 0.868482848 1 16.26254879 ETNLDSLPLVDTHSK(ac)R ddPTM_HeLa_A486_30min_R1 2 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 0 1 ; ETNLDSLPLVDTHSK(1)R;ETNLDSLPLVDTHSK(1)R 225.69 2.38E-24 68514000 77415 76872 133569 25266 100054 74175 112351 110272 74309 152657 FALSE TRUE FALSE 71988.60827 70780.38276 185290.4939 58820.52487 87504.29435 65024.04266 84239.59147 85165.47282 80750.16395 114430.6936 0.629102263 0.618543684 1.619237707 0.514027513 0.764692511 0.568239522 0.736162553 0.74425375 0.705668745 1 16.80411455 ETNLDSLPLVDTHSKR ddPTM_HeLa_A485_30min_R1 4 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 0 0 ;;; ;;; 126.63 7.57E-06 1226611000 985633 1428280 1066927 865222 1540530 1650510 2001490 2561400 1071870 1291460 FALSE FALSE TRUE 1204883.66 1595304.922 1461627.696 912486.887 1387149.424 1736928.151 1573855.311 1933212.634 1286984.477 969522.7896 1.242759503 1.645453762 1.507574357 0.941171158 1.43075484 1.791528956 1.623329877 1.993983695 1.327441181 1 19.88691529 -6.013514242 24.74004614 1.613802722 1.345989436 0.078268341 0.304186537 1101.268699 2016055.585 0.09622113 0.100419363 9.69E-07 6.013514242 -0.267813285 ETNLDSLPLVDTHSKR ddPTM_HeLa_A486_30min_R1 3 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 0 0 ;; ;; 105.31 0.00035586 530766000 913074 839999 605970 341363.2 1094155 806647 1051516 1106331 665497 1069544 FALSE FALSE TRUE 849072.2277 773434.42 840617.8124 794710.7811 956915.8773 707131.0945 788415.575 854443.5823 723182.8158 801723.2208 1.059059044 0.964715004 1.04851374 0.991253291 1.193573857 0.882013987 0.983401197 1.065758806 0.902035512 1 19.61274474 ETPAAQS(ph)PTRGPSDTK ddPTM_HeLa_A485_30min_R1 4 ETPAAQSPTRGPSDTK 16 1 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 ET(0.026)PAAQS(0.952)PT(0.022)RGPSDTK;ET(0.078)PAAQS(0.735)PT(0.187)RGPSDTK;ETPAAQS(0.731)PT(0.268)RGPSDTK;ET(0.076)PAAQS(0.886)PT(0.037)RGPS(0.001)DTK ;;; 135.91 3.83E-06 1678490000 1028750 1034710 806590 1163120 1440460 1165920 1513930 1661630 982530 1473820 TRUE FALSE FALSE 1257591.888 1155710.334 1104981.206 1226658.3 1297042.745 1226965.768 1190466.488 1254112.637 1179714.759 1106423.798 1.136627657 1.044545803 0.998696167 1.108669484 1.172283846 1.108947377 1.07595886 1.133483065 1.066241309 1 20.07747266 -4.2188891 21.78026311 1.085141149 1.136628504 0.086769529 0.052784809 13975.53701 7152850.505 0.013745134 3.787977201 6.04E-05 4.2188891 0.051487355 ETPAAQS(ph)PTRGPSDTK ddPTM_HeLa_A486_30min_R1 2 ETPAAQSPTRGPSDTK 16 1 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 ET(0.008)PAAQS(0.981)PT(0.012)RGPSDTK;ETPAAQS(0.945)PT(0.055)RGPSDTK ; 135.98 3.78E-06 741120000 611720 604430 379690 264260 658590 670730 814460 786430 506120 799430 TRUE FALSE FALSE 568841.5869 556532.7655 526716.1365 615210.635 575983.5011 587982.1521 610673.4935 607377.0566 549990.8891 599247.5246 0.949259803 0.92871934 0.878962557 1.026638592 0.96117794 0.981200803 1.019067194 1.013566234 0.917802522 1 19.19279252 -5.263075447 24.99977007 0.988890501 0.919954444 0.467266278 0.03400654 129.1522215 1973511.974 0.009364748 0.014760755 5.46E-06 5.263075447 -0.068936056 ETPAAQS(ph)PTRGPSDTKR ddPTM_HeLa_A485_30min_R1 3 ETPAAQSPTRGPSDTKR 17 2 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 ETPAAQS(0.999)PT(0.001)RGPSDTKR;ETPAAQS(0.99)PT(0.01)RGPSDTKR;ETPAAQS(0.986)PT(0.013)RGPSDTKR ;; 163.68 3.19E-12 889891000 397362 448418 335930 409007 572701 490767 613010 772530 418101 550717 TRUE FALSE FALSE 485753.806 500856.5844 460204.4862 431350.0167 515680.8776 516462.8012 482035.4057 583065.8062 502010.0357 413433.3871 1.174926412 1.211456549 1.1131285 1.043336194 1.247313095 1.249204388 1.165932459 1.410301694 1.214246482 1 18.65729537 -5.80882473 24.99640561 1.234321758 1.139508685 0.103846385 0.103789219 217.4974852 114731.618 0.031466533 0.035679805 1.55E-06 5.80882473 -0.094813072 ETPAAQS(ph)PTRGPSDTKR ddPTM_HeLa_A486_30min_R1 4 ETPAAQSPTRGPSDTKR 17 2 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 ETPAAQS(1)PTRGPSDTKR;ETPAAQS(0.992)PT(0.008)RGPSDTKR;ET(0.001)PAAQS(0.978)PT(0.021)RGPSDTKR;ETPAAQS(1)PTRGPSDTKR ;;; 162.81 3.37E-12 1083840000 625503 540507 364555 231925 630015 545281 666621 682413 435734 684410 TRUE FALSE FALSE 581658.4698 497675.2568 505720.4591 539933.1208 550992.644 478009.7742 499825.375 527042.4569 473503.774 513029.2812 1.133772459 0.970071836 0.985753597 1.052441139 1.073998433 0.93173975 0.97426286 1.027314573 0.922956625 1 18.96868164 -6.259309079 24.99921279 0.973149929 1.036465497 0.328104782 0.050992695 271.1175878 3181587.31 0.017306807 0.016515694 5.50E-07 6.259309079 0.063315568 ETPAATEAPSST(ph)PK ddPTM_HeLa_A485_30min_R1 7 ETPAATEAPSSTPK 14 0 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 ETPAATEAPS(0.003)S(0.015)T(0.982)PK;ETPAATEAPSS(0.001)T(0.999)PK;ETPAATEAPSS(0.027)T(0.973)PK;ETPAATEAPSST(1)PK;ETPAATEAPSS(0.004)T(0.996)PK;ETPAATEAPSST(0.999)PK;ETPAATEAPSS(0.028)T(0.972)PK ;;;;;; 335.22 1.08E-80 20242500000 7250390 5504910 3275400 11165030 5493600 5973830 9952410 9001660 4932320 18381610 TRUE FALSE FALSE 8863214.242 6148661.338 4487106.761 11774947.32 4946637.895 6286610.502 7825996.3 6793988.771 5922191.382 13799412.92 0.642289226 0.445574125 0.325166497 0.853293353 0.358467271 0.455570867 0.567125308 0.492338972 0.429162561 1 23.71810355 -10.68348832 2.79226864 1.064499471 0.506014732 0.509881361 0.144801573 87739538.45 79371909.33 40146212.2 0.03437667 2.07E-11 10.68348832 -0.558484738 ETPAATEAPSST(ph)PK ddPTM_HeLa_A486_30min_R1 6 ETPAATEAPSSTPK 14 0 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 ETPAATEAPSS(0.022)T(0.978)PK;ETPAATEAPSS(0.019)T(0.981)PK;ETPAATEAPSS(0.004)T(0.996)PK;ETPAATEAPSS(0.007)T(0.993)PK;ETPAATEAPS(0.017)S(0.157)T(0.825)PK;ETPAATEAPSS(0.014)T(0.985)PK ;;;;; 309.91 6.03E-68 16546895000 3972038 3928395 2361218 2297339 4246730 4967171 5869373 5041217 3796665 8498090 TRUE FALSE FALSE 3693618.648 3617094.673 3275544.845 5348321.293 3714065.524 4354371.945 4400793.796 3893441.938 4125762.979 6370112.951 0.57983566 0.56782269 0.514205144 0.839595991 0.583045474 0.683562753 0.690850198 0.611204537 0.647675012 1 22.60288752 -14 0.255030094 3.257620614 0.606294371 0.631741176 0.084219722 124.9112407 1.234829323 147.445641 0.118988574 1.00E-14 14 -2.651326242 ETPAATEAPSSTPK ddPTM_HeLa_A485_30min_R1 1 ETPAATEAPSSTPK 14 0 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 0 253.79 1.24E-39 19901000 16549 14863 9263.7 18576 15153 15943 20334 20935 14983 37793 FALSE FALSE TRUE 20230.26796 16601.09856 12690.72812 19590.75984 13644.31411 16777.75083 15989.47479 15800.65843 17989.95067 28371.90063 0.71303887 0.585124655 0.447299188 0.690498677 0.480909414 0.591350965 0.563567277 0.556912229 0.634076331 1 14.79217518 -8.244371385 3.211107128 0.999985905 0.575182034 0.729637639 0.076454816 0.911817381 11.37333777 0.070396884 0.018686116 5.70E-09 8.244371385 -0.424803871 ETPCWIEIHLHR ddPTM_HeLa_A485_30min_R1 1 ETPCWIEIHLHR 12 0 K7EIU8;Q13485 K7EIU8 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 0 0 98.105 0.0025885 5261800 4800.3 6918.6 11333 4066.7 10410 6147.9 6376.5 6207.9 7374.2 6455.9 FALSE FALSE TRUE 5868.110174 7727.670086 15525.54831 4288.853524 9373.543848 6469.794538 5014.108684 4685.402791 8854.1343 4846.562942 1.210777667 1.59446399 3.20341415 0.884926818 1.934060067 1.334924278 1.034570013 0.966747538 1.826889366 1 12.24274627 -6.11786049 1.405049202 1.202635787 1.854142744 0.150086267 0.614712468 0.778899999 3.124061722 0.269541716 0.274049968 7.62E-07 6.11786049 0.651506957 ETPCWIEIHLHR ddPTM_HeLa_A486_30min_R1 1 ETPCWIEIHLHR 12 0 K7EIU8;Q13485 K7EIU8 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 0 0 73.273 0.019777 5851500 4962.8 7095.1 13237 2667 14556 5471 4614 7286.8 7785.6 4769.4 FALSE FALSE TRUE 4614.933348 6532.858436 18362.7209 6208.910783 12730.25075 4796.043645 3459.528398 5627.75471 8460.462077 3575.111196 1.290850297 1.827316152 5.136265668 1.736704243 3.560798546 1.341508944 0.967670153 1.574148159 2.366489212 1 11.8037724 -6.283360141 24.37569335 1.455704046 2.742005063 0.253856509 1.079744665 867.5824453 964740.3609 0.384288479 0.339222176 5.21E-07 6.283360141 1.286301018 ETPDPWQSLDPFDS(ph)LESKPFKK ddPTM_HeLa_A485_30min_R1 1 ETPDPWQSLDPFDSLESKPFKK 22 2 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ETPDPWQSLDPFDS(0.951)LES(0.049)KPFKK 84.365 0.0011259 74670000 143360 95542 57351 190080 134610 158680 245280 239260 101470 272840 TRUE FALSE FALSE 175249.9374 106714.8058 78567.52147 200463.5891 121207.7558 166988.2394 192873.9242 180581.1099 121834.0983 204826.0092 0.855603925 0.521002221 0.383581762 0.978701825 0.591759592 0.815268725 0.941647621 0.881631735 0.594817517 1 17.6440394 -5.26677158 24.99992803 0.818407859 0.580156596 0.291758937 0.172406287 559.5369344 2623380.305 0.047827653 0.07333241 5.41E-06 5.26677158 -0.238251264 ETPDPWQSLDPFDS(ph)LESKPFKK ddPTM_HeLa_A486_30min_R1 1 ETPDPWQSLDPFDSLESKPFKK 22 2 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ETPDPWQSLDPFDS(0.996)LES(0.004)KPFKK 120.6 1.26E-05 74796000 61484 52912 21788 34050 52341 75056 91262 82600 44444 91822 TRUE FALSE FALSE 57174.2891 48719.06042 30224.8971 79270.12079 45775.90372 65796.35383 68427.28233 63793.78315 48296.4417 68829.17354 0.830669412 0.707825736 0.439129159 1.151693631 0.665065427 0.955937002 0.994161034 0.926842208 0.701685626 1 16.07073257 -5.258346906 24.99309746 0.905340015 0.664069884 0.342369926 0.161256799 321.5868853 2599023.694 0.043268519 0.071022144 5.52E-06 5.258346906 -0.241270131 ETPHS(ph)PGVEDAPIAK ddPTM_HeLa_A485_30min_R1 9 ETPHSPGVEDAPIAK 15 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ET(0.028)PHS(0.972)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ET(0.003)PHS(0.997)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ET(0.198)PHS(0.802)PGVEDAPIAK;ET(0.014)PHS(0.986)PGVEDAPIAK;ET(0.038)PHS(0.962)PGVEDAPIAK;ET(0.035)PHS(0.965)PGVEDAPIAK ;;;;;;;; 287.42 4.69E-59 1.11E+11 23572820 24050900 18985500 24291140 32475450 26042490 34827850 37861530 23159700 33511680 TRUE FALSE FALSE 28816512.48 26863443.54 26009026.5 25618103.47 29242080.17 27406034.51 27386595.33 28575930.4 27807639.36 25157834.91 1.145428952 1.06779632 1.033834056 1.018295237 1.162344863 1.089363795 1.088591106 1.135866043 1.105327205 1 24.58450443 -4.252729106 23.2590828 1.082267218 1.145429041 0.144235113 0.048293755 929.7948269 2482686.014 0.012314793 0.133833359 5.59E-05 4.252729106 0.063161823 ETPHS(ph)PGVEDAPIAK ddPTM_HeLa_A486_30min_R1 10 ETPHSPGVEDAPIAK 15 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 ET(0.042)PHS(0.958)PGVEDAPIAK;ET(0.001)PHS(0.999)PGVEDAPIAK;ET(0.002)PHS(0.998)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ETPHS(1)PGVEDAPIAK;ET(0.314)PHS(0.686)PGVEDAPIAK;ET(0.029)PHS(0.971)PGVEDAPIAK;ET(0.023)PHS(0.977)PGVEDAPIAK;ET(0.134)PHS(0.866)PGVEDAPIAK ;;;;;;;;; 355.42 2.76E-104 1.07E+11 32530500 37934990 24924360 13881643 40444140 37990110 45582880 44115500 27265920 37911560 TRUE FALSE FALSE 30250279.94 34928883.24 34575739.69 32317166.44 35371258.83 33303276.48 34177561.3 34071363.68 29629351.9 28418258.61 1.064466347 1.229100055 1.216673413 1.137197282 1.244666653 1.171897157 1.202662055 1.198925105 1.042616731 1 24.76031482 -7.84191315 4.215351412 1.003607234 1.186833827 0.634954947 0.049386625 0.122154666 3.787054695 0.044416401 0.011850269 1.44E-08 7.84191315 0.183226593 ETPPNGNLS(ph)PAPR ddPTM_HeLa_A485_30min_R1 2 ETPPNGNLSPAPR 13 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 ETPPNGNLS(1)PAPR;ETPPNGNLS(1)PAPR ; 192.68 1.19E-17 372340000 288502 337720 299093 323180 408010 374630 418950 456150 326510 446840 TRUE FALSE FALSE 352678.2746 377213.4162 409739.947 340834.5051 367387.0918 394245.0475 329437.91 344278.4973 392037.5621 335451.0115 1.051355526 1.124496285 1.221459864 1.016048524 1.09520341 1.175268621 0.982074576 1.026315276 1.168687971 1 18.35574257 -6.759817875 24.99955714 1.046462404 1.114032028 0.186034741 0.071367605 81.48078323 1256262.34 0.028520191 0.020892422 1.74E-07 6.759817875 0.067569624 ETPPNGNLS(ph)PAPR ddPTM_HeLa_A486_30min_R1 2 ETPPNGNLSPAPR 13 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 ETPPNGNLS(1)PAPR;ETPPNGNLS(1)PAPR ; 228.95 8.83E-28 795440000 556420 555280 435730 227450 635890 521240 635760 599920 465280 691710 TRUE FALSE FALSE 517417.8314 511277.5905 604456.3253 529515.0947 556130.7468 456934.7084 476686.1236 463331.3122 505610.845 518501.3137 0.997910358 0.986068072 1.16577588 1.021241568 1.072573457 0.881260464 0.919353743 0.893597181 0.975138985 1 18.98398812 -6.255002605 24.99382521 0.926312627 1.050210755 0.501299966 0.057014462 419.6590189 1629526.889 0.019049148 0.018600646 5.56E-07 6.255002605 0.123898128 ETPRPEGGSPSPAGT(ph)PPQPK ddPTM_HeLa_A485_30min_R1 1 ETPRPEGGSPSPAGTPPQPK 20 1 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 0 ET(0.006)PRPEGGS(0.005)PS(0.005)PAGT(0.984)PPQPK 55.061 0.033773 204750000 42722 40887 33772 47095 46914 46833 55681 62672 40363 68564 TRUE FALSE FALSE 52225.36151 45668.37898 46265.66817 49667.6806 42243.07743 49285.10346 43784.29948 47301.59373 48463.48387 51472.25663 1.014631278 0.887242604 0.898846703 0.964940802 0.820696045 0.957508116 0.850638817 0.918972605 0.941545738 1 15.65150741 -8.085905143 2.477854467 0.99971473 0.910697537 0.192112564 0.05327913 0.594183789 8.098603757 0.048078313 0.013064274 8.21E-09 8.085905143 -0.089017194 ETPS(ph)PRPMR ddPTM_HeLa_A485_30min_R1 3 ETPSPRPMR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ETPS(1)PRPMR;ET(0.063)PS(0.937)PRPMR;ET(0.031)PS(0.969)PRPMR ;; 151.1 3.20E-05 913789000 314470 514409 505786 352398 679030 506450 605850 732590 461084 475279 TRUE FALSE FALSE 384422.7666 574564.6578 692897.2889 371648.6104 611423.389 532966.9389 476405.1982 552921.1538 553619.3295 356800.6922 1.077415978 1.610323832 1.941972939 1.04161404 1.71362725 1.493738523 1.335213772 1.549663905 1.551620671 1 18.44475889 -10.13744722 4.438630714 0.999928782 1.489168441 0.234877437 0.259079185 168862014.6 18.0513468 125285.4287 0.060200349 7.29E-11 10.13744722 0.489239659 ETQS(ph)PEQVK ddPTM_HeLa_A485_30min_R1 7 ETQSPEQVK 9 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ET(0.002)QS(0.998)PEQVK ;;;;;; 252.97 2.89E-21 54997250000 39927220 38211980 27818550 50070030 47347170 42201220 59359130 57464910 36509200 60716250 TRUE FALSE FALSE 48808892.34 42680538.66 38109789.27 52805228.95 42633119.51 44410810.62 46676566.96 43371550.72 43836261.56 45580806.27 1.070821171 0.936370858 0.836092917 1.158497036 0.935330526 0.974331396 1.024039958 0.951531012 0.96172633 1 25.44192311 -4.245004417 22.9825282 0.975424469 1.070821401 0.12070614 0.077323161 2268.419084 3171979.697 0.01887652 0.432009885 5.69E-05 4.245004417 0.095396931 ETQS(ph)PEQVK ddPTM_HeLa_A486_30min_R1 7 ETQSPEQVK 9 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK;ETQS(1)PEQVK ;;;;;; 209.19 3.81E-10 64459500000 52825350 54416770 26594360 19151910 45779960 55921100 64427900 58679800 41309350 67254300 TRUE FALSE FALSE 49122565.76 50104586.96 36892408.41 44586614.36 40037810.54 49022123.25 48307357.97 45319690.51 44890077.72 50413385.53 0.974395297 0.993874671 0.731797875 0.884420157 0.794190077 0.972402919 0.958224834 0.898961457 0.890439657 1 25.58730351 -6.294231294 24.7782669 0.938579552 0.874784778 0.160108623 0.077670934 1292.533199 976661.3373 0.028725856 0.025335432 5.08E-07 6.294231294 -0.063794774 ETQS(ph)PEQVKSEK ddPTM_HeLa_A485_30min_R1 6 ETQSPEQVKSEK 12 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 ETQS(1)PEQVKSEK;ET(0.006)QS(0.92)PEQVKS(0.074)EK;ET(0.003)QS(0.997)PEQVKSEK;ET(0.005)QS(0.995)PEQVKSEK;ET(0.032)QS(0.968)PEQVKSEK;ET(0.029)QS(0.971)PEQVKSEK ;;;;; 179.81 4.15E-13 12892310000 2436765 2493256 2319335 3869020 6229010 4529850 8192730 10893510 3356270 6031500 TRUE FALSE FALSE 2978814.968 2784820.601 3177353.532 4080374.766 5608827.893 4767025.942 6442286.307 8221859.592 4029842.603 4527958.052 0.657871591 0.615027915 0.701718853 0.901151185 1.238710215 1.052798168 1.422779592 1.815798534 0.889991152 1 22.11042916 -5.611751126 1.286928361 1.312262045 0.616973508 0.524992628 0.245747522 0.328949615 1.127213415 0.092796919 0.155117054 2.44E-06 5.611751126 -0.695288537 ETQS(ph)PEQVKSEK ddPTM_HeLa_A486_30min_R1 5 ETQSPEQVKSEK 12 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 ETQS(1)PEQVKSEK;ETQS(1)PEQVKSEK;ETQS(1)PEQVKSEK;ETQS(1)PEQVKSEK;ET(0.005)QS(0.995)PEQVKSEK ;;;; 186.72 2.47E-13 12716700000 3231020 2864450 2196780 3028710 6051840 4091310 7020200 7770600 2416500 4672380 TRUE FALSE FALSE 3004542.183 2637460.55 3047432.048 7050989.943 5292761.796 3586565.77 5263671.708 6001404.011 2625964.166 3502385.636 0.8578559 0.753046873 0.8701018 2.01319634 1.511187615 1.024035084 1.502881823 1.713518908 0.749764429 1 21.73990651 -5.037355775 24.54677507 1.391487582 0.80698175 0.325637692 0.349650161 461.1750659 303041.4543 0.093431576 0.161892096 9.18E-06 5.037355775 -0.584505832 ETQSTPQS(ph)APQVR ddPTM_HeLa_A485_30min_R1 1 ETQSTPQSAPQVR 13 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 ETQS(0.003)T(0.02)PQS(0.977)APQVR 131.48 0.00010208 0 172740 233340 208970 165790 256480 222240 268340 321160 206440 217890 TRUE FALSE FALSE 211165.4171 260627.0832 286276.699 174846.6879 230943.9506 233876.1428 211006.9669 242395.0064 247870.6144 163574.033 1.290947061 1.593327978 1.750135359 1.068914697 1.411861935 1.429787715 1.289978385 1.481867275 1.515342074 1 17.31958422 -10.64314774 2.949780542 0.96216744 1.427128259 0.345814077 0.175683371 48398140.18 44600835.75 13820157.66 0.044099891 2.27E-11 10.64314774 0.464960819 ETQSTPQS(ph)APQVR ddPTM_HeLa_A486_30min_R1 1 ETQSTPQSAPQVR 13 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 ETQST(0.021)PQS(0.978)APQVR 148.66 1.58E-06 0 123810 150970 147500 50331 197340 133390 163220 167260 134430 144770 TRUE FALSE FALSE 115131.5584 139006.5874 204615.9502 117173.1116 172587.7771 116933.698 122380.6296 129178.5493 146082.5006 108518.6497 1.060937992 1.280946526 1.885537193 1.079750918 1.590397388 1.07754472 1.127738227 1.190381097 1.346151109 1 16.72758348 -6.282806663 24.85111194 1.158972794 1.385496952 0.18881755 0.238888072 1370.56544 1594023.832 0.083438105 0.073654735 5.21E-07 6.282806663 0.226524158 ETRIS(ph)FVEEDVHPK ddPTM_HeLa_A485_30min_R1 1 ETRISFVEEDVHPK 14 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ET(0.408)RIS(0.592)FVEEDVHPK 98.165 0.00049234 84902000 133620 142810 121620 181600 256170 155760 227210 286430 154580 277380 TRUE FALSE FALSE 163343.308 159510.3872 166612.299 191520.3482 230664.8153 163915.3527 178664.7274 216182.5934 185602.7881 208234.2708 0.784420871 0.766014098 0.800119492 0.919735005 1.107717834 0.787167992 0.85799867 1.038170098 0.891317204 1 17.667848 -5.257234337 4.196680325 0.942617261 0.778552922 0.422430977 0.086069323 0.210465286 9.222049506 0.024819073 0.041560178 5.53E-06 5.257234337 -0.164064339 ETRIS(ph)FVEEDVHPK ddPTM_HeLa_A486_30min_R1 2 ETRISFVEEDVHPK 14 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 ET(0.277)RIS(0.723)FVEEDVHPK;ET(0.101)RIS(0.899)FVEEDVHPK ; 113.54 0.00012625 155077000 357940 332380 256310 196146 444040 402760 511070 527480 277530 457960 TRUE FALSE FALSE 332850.2544 306040.9983 355560.0962 456637.8007 388344.3627 353071.5662 383194.8805 407384.3188 301586.5239 343283.8352 0.969606548 0.891510077 1.035761256 1.330204786 1.131263179 1.028512065 1.116262524 1.186727358 0.878534009 1 18.3890424 -4.989648887 11.97056122 1.109347494 0.938709282 0.242261817 0.114123799 0.597050029 671.1614586 0.029892964 0.061047721 1.02E-05 4.989648887 -0.170638212 ETS(ph)PADAR ddPTM_HeLa_A486_30min_R1 1 ETSPADAR 8 0 M0QZR4;M0QYC1;Q92888;Q92888-3;Q92888-2;Q92888-4;M0R2C7 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 ET(0.082)S(0.918)PADAR 115.86 0.00096231 93103000 196330 97678 157700 59340 103520 259150 135020 124650 254900 219780 TRUE FALSE FALSE 182568.2808 89937.63954 218765.6634 138146.5189 90535.55631 227178.7078 101236.5679 96269.91609 276994.9372 164745.6575 1.10818266 0.54591812 1.327899422 0.83854422 0.549547452 1.378966289 0.614502194 0.584354802 1.681348944 1 17.32988091 -7.757356766 24.99998645 1.340674444 0.869970787 0.242686234 0.33363878 131.4420518 804928.4479 0.2329149 0.080782324 1.75E-08 7.757356766 -0.470703657 ETS(ph)PESSLIQDEIAVK ddPTM_HeLa_A485_30min_R1 3 ETSPESSLIQDEIAVK 16 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ET(0.033)S(0.967)PESSLIQDEIAVK;ET(0.206)S(0.794)PESSLIQDEIAVK;ET(0.108)S(0.892)PESSLIQDEIAVK ;; 363.78 1.49E-118 1170744000 1261220 1263000 994580 1691300 1684690 1399420 1959160 1924340 1307870 2056630 TRUE FALSE FALSE 1541774.038 1410696.863 1362516.53 1783691.436 1516956.348 1472691.467 1540569.461 1452392.598 1570347.513 1543949.99 0.998590659 0.913693366 0.882487476 1.155277987 0.982516505 0.953846612 0.997810467 0.94069925 1.017097394 1 20.55819459 ETS(ph)PESSLIQDEIAVK ddPTM_HeLa_A486_30min_R1 4 ETSPESSLIQDEIAVK 16 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ET(0.019)S(0.84)PES(0.14)SLIQDEIAVK;ET(0.068)S(0.925)PES(0.007)S(0.001)LIQDEIAVK;ET(0.021)S(0.979)PESSLIQDEIAVK;ET(0.018)S(0.981)PES(0.001)SLIQDEIAVK ;;; 298.1 1.28E-67 1501630000 1769010 1705000 1035930 699043 1607670 1794470 1999390 1942740 1439650 2184640 TRUE FALSE FALSE 1645011.534 1569889.59 1437069.839 1627407.432 1406021.038 1573086.536 1499121.475 1500420.512 1564440.021 1637591.924 1.004530805 0.958657384 0.877550639 0.993780812 0.858590603 0.960609608 0.91544264 0.916235901 0.95532959 1 20.64314446 -8.047835186 6.732259454 0.999997565 0.934086606 0.163746927 0.044040745 0.739043212 100.1812111 0.040463511 0.010483225 8.96E-09 8.047835186 -0.065910959 ETS(ph)PQVK ddPTM_HeLa_A485_30min_R1 2 ETSPQVK 7 0 Q9GZR2;A0A0C4DG22 Q9GZR2 REXO4 RNA exonuclease 4 1 0 ET(0.005)S(0.995)PQVK;ET(0.042)S(0.958)PQVK ; 85.807 0.0078342 1484220000 3701600 3377300 1721060 5830400 2488000 3434600 4115400 4822900 3079600 6897200 TRUE FALSE FALSE 4525008.15 3772245.856 2357751.713 6148899.989 2240285.984 3614430.345 3236111.17 3640076.213 3697647.472 5177854.974 0.873915583 0.728534475 0.455352984 1.187538087 0.432666808 0.698055539 0.624990693 0.70300853 0.714127277 1 22.30392313 -8.25972407 6.42452889 0.999999998 0.708002239 0.154391146 0.201136653 76.27771955 1887.894667 0.184091709 0.047722613 5.50E-09 8.25972407 -0.291997759 ETS(ph)PQVK ddPTM_HeLa_A486_30min_R1 2 ETSPQVK 7 0 Q9GZR2;A0A0C4DG22 Q9GZR2 REXO4 RNA exonuclease 4 1 0 ET(0.02)S(0.98)PQVK;ET(0.128)S(0.872)PQVK ; 86.898 0.0075248 814460000 4231900 2528100 2170900 1649120 2292200 5319600 3587700 3009800 4007700 6329600 TRUE FALSE FALSE 3935265.664 2327764.149 3011530.619 3839234.702 2004690.902 4663321.838 2690019.513 2324534.243 4355090.663 4744626.961 0.829415188 0.490610572 0.634724425 0.809175249 0.422518128 0.982863748 0.566961225 0.489929822 0.917899489 1 22.17786323 -7.911527155 6.191512822 0.997784843 0.65358308 0.353600883 0.166915077 0.19879732 10.29616412 0.152587172 0.039603053 1.23E-08 7.911527155 -0.344201764 ETSFGS(ph)SENITMTSLSK ddPTM_HeLa_A485_30min_R1 3 ETSFGSSENITMTSLSK 17 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9;A0A087WZS7 Q9UMZ2-4 SYNRG Synergin gamma 1 0 ETSFGS(0.789)S(0.211)ENITMTSLSK;ETSFGS(0.5)S(0.5)ENITMTSLSK;ETSFGS(0.5)S(0.5)ENITMTSLSK ;; 323.69 8.92E-80 682930000 605363 737820 569077 772410 835790 751980 960640 1075830 654245 1030300 TRUE FALSE FALSE 740023.9109 824101.6308 779602.2636 814604.8025 752575.813 791352.51 755391.4163 811981.0057 785545.9704 773465.1713 0.956764362 1.06546702 1.007934543 1.053188731 0.972992503 1.023126237 0.976632749 1.049796469 1.01561906 1 19.5609768 -7.291363467 24.99643772 1.024530806 1.011193347 0.025309075 0.034348284 3158.486522 2638354.632 0.017720075 0.008515347 5.11E-08 7.291363467 -0.013337459 ETSFGS(ph)SENITMTSLSK ddPTM_HeLa_A486_30min_R1 1 ETSFGSSENITMTSLSK 17 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9;A0A087WZS7 Q9UMZ2-4 SYNRG Synergin gamma 1 0 ETSFGS(0.988)S(0.012)ENITMTSLSK 310.08 5.25E-79 474880000 213310 214900 146690 75487 215530 207250 267810 252700 186300 234920 TRUE FALSE FALSE 198358.0705 197870.5413 203492.2965 175737.5509 188496.2177 181681.6022 200801.1054 195165.7264 202448.634 176094.5029 1.126429657 1.123661091 1.15558574 0.997972952 1.070426473 1.031727846 1.140303088 1.108301072 1.149659022 1 17.42599035 -8.255397966 0.007288587 4.27E-07 2.150076207 0.140129498 0.053696772 9609.599686 36.42610442 5445.475404 5296.387835 5.55E-09 8.255397966 2.150075781 ETSGNLEQLLLAVVK ddPTM_HeLa_A485_30min_R1 1 ETSGNLEQLLLAVVK 15 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 106.49 0.0026108 2429500 2670.6 2397.1 2254 2929.7 2964.2 2746.8 2722.1 2423 2319.8 4972 FALSE FALSE TRUE 3264.665757 2677.419993 3087.848397 3089.742093 2669.07384 2890.618201 2140.501097 1828.755451 2785.362582 3732.571903 0.874642429 0.717312369 0.827270975 0.827778318 0.715076336 0.774430681 0.573465469 0.489945137 0.74623146 1 11.86595434 -6.254311212 1.877948072 0.667002952 0.801704083 0.054859408 0.134546521 0.643520702 4.467557644 0.05360103 0.049312461 5.57E-07 6.254311212 0.134701131 ETSHGS(ph)PTVTK ddPTM_HeLa_A485_30min_R1 3 ETSHGSPTVTK 11 0 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 ETSHGS(0.643)PT(0.355)VT(0.001)K;ETSHGS(0.999)PT(0.001)VTK;ETSHGS(1)PTVTK ;; 145.52 6.75E-07 1938600000 2446400 2670080 2178240 2576890 3324470 2845400 3451910 3933600 2373460 3562830 TRUE FALSE FALSE 2990593.24 2982322.629 2984061.62 2717658.976 2993474.094 2994380.744 2714381.229 2968878.432 2849791.651 2674682.05 1.11811168 1.115019495 1.115669663 1.01606805 1.119188763 1.119527738 1.014842579 1.10999303 1.065469315 1 21.35093597 -14 0.107864454 0.720890469 1.139903342 0.37223922 0.037906358 195.4319909 1.406309018 12.11709476 0.511577491 1.00E-14 14 0.419012872 ETSHGS(ph)PTVTK ddPTM_HeLa_A486_30min_R1 1 ETSHGSPTVTK 11 0 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 ETSHGS(1)PTVTK 108.59 0.00045056 79429000 199970 184080 160370 81989 227960 224350 233550 225430 179080 273470 TRUE FALSE FALSE 185953.1356 169492.8304 222469.5589 190874.5355 199367.1312 196671.978 175113.3198 174104.5101 194602.7986 204991.332 0.907126823 0.826829255 1.085263248 0.931134666 0.972563714 0.959416069 0.854247436 0.849326205 0.949322084 1 17.64520338 -6.728312287 24.99093103 0.900667696 0.948308752 0.038066857 0.072966658 496.7112187 374716.037 0.028078293 0.021747976 1.87E-07 6.728312287 0.047641056 ETSKVIY(ph)DFIEK ddPTM_HeLa_A485_30min_R1 1 ETSKVIYDFIEK 12 1 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 ETSKVIY(1)DFIEK 93.206 0.0013238 22945000 12955 21966 13868 9652.3 22970 28646 42392 84802 11700 12422 TRUE FALSE FALSE 15836.79506 24534.73262 18998.3503 10179.58071 20683.02615 30145.86026 33334.60289 64004.17654 14048.08268 9325.42401 1.698238604 2.630950892 2.037263965 1.091594409 2.217918041 3.232653039 3.574593804 6.863406583 1.506428305 1 13.18695361 -6.319050129 2.825968655 3.692689358 1.907285844 0.128549191 1.529157772 0.422480207 6.670238362 0.563541534 0.503281163 4.80E-07 6.319050129 -1.785403514 ETSPES(ph)SLIQDEIAVK ddPTM_HeLa_A485_30min_R1 1 ETSPESSLIQDEIAVK 16 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ET(0.004)S(0.238)PES(0.758)SLIQDEIAVK 336.51 7.82E-91 373810000 363740 338850 266480 463390 417500 401670 521450 462280 349510 574240 TRUE FALSE FALSE 444652.7081 378475.5599 365062.0412 488703.8223 375932.2341 422700.8201 410037.9476 348905.1052 419653.4511 431092.5361 1.031455363 0.877945054 0.846829881 1.133640185 0.872045333 0.980533841 0.951159933 0.809350838 0.973464897 1 18.71763806 -7.047785726 24.99939253 0.910895816 0.953729483 0.009838113 0.092269486 1529.559941 800192.6423 0.042139343 0.024329789 8.96E-08 7.047785726 0.042833666 ETSVSKEDT(ph)DHEEK ddPTM_HeLa_A485_30min_R1 4 ETSVSKEDTDHEEK 14 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ETSVSKEDT(1)DHEEK;ET(0.001)S(0.001)VSKEDT(0.998)DHEEK;ETSVSKEDT(1)DHEEK;ET(0.003)S(0.003)VS(0.002)KEDT(0.992)DHEEK ;;; 162.15 8.58E-12 6362050000 3359390 2384230 1235750 6128050 2434720 2531520 4154970 3135120 1946610 8345400 TRUE FALSE FALSE 4106674.716 2663044.958 1692905.349 6462809.854 2192310.728 2664066.473 3267226.717 2366226.904 2337276.772 6265045.366 0.655490021 0.425063955 0.27021438 1.03156633 0.349927351 0.425227004 0.521500887 0.377687114 0.373066217 1 22.57889353 -10.21617074 3.643003259 1.00070139 0.490894612 0.353576731 0.205978448 221091302.7 354412580.5 1771004.909 0.051625733 6.08E-11 10.21617074 -0.509806779 ETSVSKEDT(ph)DHEEK ddPTM_HeLa_A486_30min_R1 2 ETSVSKEDTDHEEK 14 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ETSVSKEDT(1)DHEEK;ETSVSKEDT(1)DHEEK ; 182.7 2.50E-17 3681800000 5209970 4510560 1389440 3006920 2385450 5369130 7043400 5352690 3326200 9865700 TRUE FALSE FALSE 4844778.007 4153126.798 1927468.378 7000261.721 2086244.618 4706741.33 5281066.823 4133999.335 3614517.694 7395264.505 0.655118962 0.561592732 0.260635489 0.946587065 0.282105477 0.636453412 0.714114663 0.559006285 0.488761111 1 22.81817032 -11.09086634 2.458696314 1.724561033 0.566871196 0.31924952 0.189619848 12474969.32 3580180.249 50643941.23 0.045669262 8.11E-12 11.09086634 -1.157689837 ETSVSKEDT(ph)DHEEKASNEDVTK ddPTM_HeLa_A486_30min_R1 2 ETSVSKEDTDHEEKASNEDVTK 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ETSVS(0.001)KEDT(0.558)DHEEKAS(0.441)NEDVTK;ET(0.008)S(0.008)VS(0.008)KEDT(0.853)DHEEKAS(0.122)NEDVT(0.002)K ; 107.87 0.00011055 2054890000 763330 561650 213043 648680 440560 812060 1357450 1195450 424770 1646100 TRUE FALSE FALSE 709824.5088 517142.8085 295538.9551 1510159.822 385300.8567 711876.2936 1017801.652 923272.1315 461589.4056 1233905.846 0.575266347 0.419110429 0.239514997 1.223885783 0.312261149 0.576929185 0.824861683 0.748251688 0.374088029 1 20.23480088 -14 0.128802858 2.240138385 0.435120536 0.157998186 0.276923508 280.9724663 2.287527696 91.73707511 2.160429498 1.00E-14 14 -1.805017849 ETSVSKEDTDHEEKAS(ph)NEDVTK ddPTM_HeLa_A486_30min_R1 1 ETSVSKEDTDHEEKASNEDVTK 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ETSVSKEDT(0.017)DHEEKAS(0.983)NEDVTK 241.45 3.69E-47 2015000000 1102200 728630 220390 978150 583750 1256500 2006400 1841600 705460 2769800 TRUE FALSE FALSE 1024941.472 670890.7052 305730.9102 2277182.633 510530.6317 1101485.805 1504377.498 1422307.882 766609.8408 2076224.052 0.493656487 0.323130206 0.147253332 1.096790412 0.245893805 0.530523574 0.724573775 0.68504547 0.369232714 1 20.98553071 -14 0.110156314 2.477895007 0.252358812 0.248582199 0.258783114 241.3722261 1.764124216 81.32672472 3.219671887 1.00E-14 14 -2.225536196 ETTGSES(ph)DGGDSSSTK ddPTM_HeLa_A485_30min_R1 1 ETTGSESDGGDSSSTK 16 0 Q5JPT2;Q96B97-2;Q96B97;Q5JPT1;Q5VSN0;Q5JPT3 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 ETTGSES(1)DGGDSSSTK 436.54 8.80E-173 521570000 277850 287200 194660 352560 262140 309680 341800 363650 282620 492660 TRUE FALSE FALSE 339656.7739 320785.5417 266672.8345 371819.4601 236040.4212 325894.3659 268771.6378 274464.2673 339339.2417 369848.9287 0.91836625 0.867342087 0.721031788 1.005327936 0.638207665 0.88115536 0.726706547 0.742098316 0.917507705 1 18.49657657 -7.979271485 5.63538235 0.999758066 0.811776943 0.25926167 0.103560741 0.182583506 18.24150922 0.094752884 0.024627708 1.05E-08 7.979271485 -0.187981123 ETTSATS(ph)SPYR ddPTM_HeLa_A485_30min_R1 1 ETTSATSSPYR 11 0 A8MYV6;Q16665-2;Q16665;Q16665-3 A8MYV6 HIF1A Hypoxia-inducible factor 1-alpha 1 0 ET(0.036)T(0.036)S(0.036)AT(0.036)S(0.849)S(0.005)PYR 73.841 0.011129 5525200000 53086 38388 64819 46767 143250 77163 96477 177930 103130 57649 TRUE FALSE FALSE 64894.79756 42877.14267 88798.24544 49321.76279 128987.527 81203.13536 75863.90081 134292.3885 123827.245 43278.16525 1.499481255 0.990733836 2.051802449 1.139645419 2.980429652 1.876307253 1.752937084 3.103005586 2.861194423 1 15.40135172 -5.746373671 24.99955341 2.322693687 1.434823146 0.28196509 0.653764449 305.1596716 506369.9324 0.190422816 0.244843264 1.79E-06 5.746373671 -0.887870541 ETTSATS(ph)SPYR ddPTM_HeLa_A486_30min_R1 1 ETTSATSSPYR 11 0 A8MYV6;Q16665-2;Q16665;Q16665-3 A8MYV6 HIF1A Hypoxia-inducible factor 1-alpha 1 0 ET(0.032)T(0.032)S(0.032)AT(0.032)S(0.864)S(0.007)PYR 72.848 0.011768 3892700000 64154 54410 61468 37272 174170 101010 111690 120140 63393 66968 TRUE FALSE FALSE 59657.13589 50098.35344 85270.05577 86771.09962 152323.9745 88548.41319 83743.98066 92786.74464 68887.95628 50198.77691 1.188418116 0.997999484 1.698648075 1.728550076 3.034416054 1.763955591 1.668247432 1.848386561 1.372303481 1 15.61536459 -2.938498681 12.5846172 1.684527163 1.42334676 0 0.560470048 0 0 0.135301419 0 0.00115213 2.938498681 -0.261180404 ETTSGTSTEPVKNS(ph)SPAPPQPAPGK ddPTM_HeLa_A486_30min_R1 2 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 ETTSGTSTEPVKNS(0.589)S(0.411)PAPPQPAPGK;ET(0.001)T(0.001)S(0.001)GT(0.008)S(0.008)T(0.008)EPVKNS(0.535)S(0.438)PAPPQPAPGK ; 192.32 4.63E-21 854620000 810823 746074 362413 353955 686859 841263 1055466 961508 578938 1127388 TRUE FALSE FALSE 753988.4948 686952.3791 502749.0194 824025.1279 600706.7395 737476.5244 791377.2432 742593.618 629120.812 845082.7067 0.892206749 0.812881832 0.594911025 0.975082227 0.710825976 0.872667869 0.936449459 0.878723008 0.744448806 1 19.68873302 -6.487054163 23.87590144 0.883336026 0.796204586 0.137806724 0.111822547 747.2970514 498049.2119 0.038511469 0.033946787 3.26E-07 6.487054163 -0.08713144 ETTSGTSTEPVKNSS(ph)PAPPQPAPGK ddPTM_HeLa_A485_30min_R1 2 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 ETTSGTSTEPVKNS(0.165)S(0.835)PAPPQPAPGK;ETTSGTSTEPVKNS(0.088)S(0.912)PAPPQPAPGK ; 239.78 2.28E-49 1102170000 1317530 1131090 722270 1722050 1404400 1463120 2058760 1825810 1206330 2325600 TRUE FALSE FALSE 1610610.003 1263361.136 989467.7292 1816121.231 1264573.005 1539726.701 1618889.107 1378027.235 1448429.366 1745870.719 0.922525354 0.723628114 0.566747422 1.040238095 0.724322248 0.881924809 0.92726746 0.789306573 0.829631513 1 20.7355153 -5.261469853 25 0.870870544 0.73623309 0.236712027 0.119197922 4.323753068 3547941.934 0.032352296 0.05171779 5.48E-06 5.261469853 -0.134637454 ETTSGTSTEPVKNSS(ph)PAPPQPAPGK ddPTM_HeLa_A486_30min_R1 2 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 ETTSGTSTEPVKNS(0.196)S(0.804)PAPPQPAPGK;ETTSGTSTEPVKNS(0.154)S(0.846)PAPPQPAPGK ; 191.4 5.56E-21 857060000 885800 842800 372539 379944 747600 922820 1143980 1103910 635160 1254560 TRUE FALSE FALSE 823709.9943 776013.4586 516796.0777 884528.8333 653829.0369 808971.8509 857744.1042 852573.7912 690216.1802 940410.0102 0.875905175 0.825186302 0.549543361 0.940577858 0.695259546 0.860233135 0.912095889 0.906597954 0.733952396 1 19.84293037 -6.468232161 11.02392804 0.881209057 0.776455229 0.172818555 0.116050641 1.684966608 337.0661007 0.039878498 0.035105181 3.40E-07 6.468232161 -0.104753828 ETVFT(ph)KSPYQEFTDHLVK ddPTM_HeLa_A486_30min_R1 1 ETVFTKSPYQEFTDHLVK 18 1 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 ET(0.083)VFT(0.459)KS(0.459)PYQEFTDHLVK 97.974 0.00047742 41722000 52522 43429 25484 26241 66557 57112 72418 72998 39570 72776 TRUE FALSE FALSE 48840.47902 39987.52787 35352.08729 61090.37415 58208.80044 50066.10211 54298.25044 56377.94894 42999.95946 54552.41591 0.89529452 0.733011127 0.648038894 1.119847272 1.067025162 0.917761409 0.995340894 1.033463835 0.788231992 1 15.73535547 -5.258334496 24.9994933 0.990775125 0.756204475 0.520453794 0.101163471 216.5878557 1743885.139 0.028124468 0.0461756 5.52E-06 5.258334496 -0.23457065 ETVFTKS(ph)PYQEFTDHLVK ddPTM_HeLa_A485_30min_R1 1 ETVFTKSPYQEFTDHLVK 18 1 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 ET(0.013)VFT(0.113)KS(0.874)PYQEFTDHLVK 131.65 4.45E-06 944780000 97696 99955 66679 113210 156840 147650 220360 249630 99423 205110 TRUE FALSE FALSE 119428.1382 111643.8678 91346.33684 119394.3756 141224.4589 155380.7257 173278.2858 188407.8511 119376.2841 153979.8518 0.775608866 0.725055041 0.593235646 0.7753896 0.917161936 1.009097774 1.125330904 1.22358769 0.775272107 1 17.23238206 -5.883689161 2.02328145 1.047252332 0.698632294 0.616453988 0.115581363 0.204616603 1.713897283 0.040949925 0.048697279 1.31E-06 5.883689161 -0.348620038 ETVFTKS(ph)PYQEFTDHLVK ddPTM_HeLa_A486_30min_R1 3 ETVFTKSPYQEFTDHLVK 18 1 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 ET(0.002)VFT(0.231)KS(0.767)PYQEFTDHLVK;ETVFT(0.005)KS(0.995)PYQEFTDHLVK;ET(0.031)VFT(0.23)KS(0.739)PYQEFTDHLVK ;; 224.49 9.25E-35 1456814000 1523874 1433486 820398 882981 1930475 1737108 2374481 2391674 1208058 2183366 TRUE FALSE FALSE 1417058.302 1319891.349 1138078.077 2055624.391 1688336.825 1522801.277 1780360.739 1847142.04 1312773.44 1636636.942 0.865835461 0.806465573 0.695376016 1.256005128 1.031589096 0.930445377 1.087816542 1.128620522 0.802116466 1 20.64230289 -5.242275445 24.99261717 1.03701047 0.790949667 0.469494338 0.119099033 720.4719625 939601.4082 0.031924888 0.055184302 5.72E-06 5.242275445 -0.246060803 ETVLS(ph)ALK ddPTM_HeLa_A485_30min_R1 1 ETVLSALK 8 0 A8CG34-2;A8CG34;Q96HA1-2;Q96HA1-3;Q96HA1;C9JER0;C9J370;A0A0J9YWR1;Q6PJE2-5;Q6PJE2 A8CG34-2 POM121C;POM121;POMZP3 Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121;POM121 and ZP3 fusion protein 1 0 ETVLS(1)ALK 76.228 0.012053 24929000 25239 22515 16401 25886 27142 24461 30607 32428 20212 42336 TRUE FALSE FALSE 30853.32848 25147.9334 22468.4124 27300.08663 24439.64718 25741.74014 24067.56441 24474.98215 24268.363 31782.41434 0.970767298 0.791253085 0.706944795 0.858968307 0.76896761 0.809936585 0.75726042 0.770079387 0.763578334 1 14.9559411 -4.261209693 21.82660626 0.792285068 0.970767563 0.294264905 0.076338293 3.481102306 329404.8116 0.017216809 0.097004151 5.48E-05 4.261209693 0.178482495 ETVLS(ph)ALK ddPTM_HeLa_A486_30min_R1 2 ETVLSALK 8 0 A8CG34-2;A8CG34;Q96HA1-2;Q96HA1-3;Q96HA1;C9JER0;C9J370;A0A0J9YWR1;Q6PJE2-5;Q6PJE2 A8CG34-2 POM121C;POM121;POMZP3 Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121;POM121 and ZP3 fusion protein 1 0 ETVLS(1)ALK;ETVLS(1)ALK ; 78.655 0.0102 40669000 73182 69230 38607 27156 59975 77719 84956 70261 56005 88824 TRUE FALSE FALSE 68052.31971 63743.96267 53556.66433 63220.54039 52452.37626 68130.81997 63699.11023 54264.10409 60859.55849 66581.89225 1.022084495 0.957376856 0.804372818 0.949515525 0.787787407 1.023263498 0.956703213 0.814997926 0.914055705 1 16.02284225 ETVQTTQS(ph)PTPVEK ddPTM_HeLa_A485_30min_R1 3 ETVQTTQSPTPVEK 14 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 ETVQTT(0.004)QS(0.993)PT(0.002)PVEK;ETVQTTQS(0.973)PT(0.027)PVEK;ETVQTTQS(1)PTPVEK ;; 373.42 2.89E-163 957250000 1203220 900880 821800 1750070 1013080 972580 1190140 813510 989950 2090890 TRUE FALSE FALSE 1470872.138 1006230.079 1125818.018 1845671.893 912214.1981 1023502.785 935856.8665 613995.397 1188623.885 1569669.603 0.937058433 0.641045783 0.717232477 1.17583464 0.581150451 0.652049822 0.596212645 0.391162188 0.757244634 1 20.58202949 ETVQTTQS(ph)PTPVEK ddPTM_HeLa_A486_30min_R1 3 ETVQTTQSPTPVEK 14 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 ETVQTTQS(1)PTPVEK;ETVQTTQS(0.998)PT(0.002)PVEK;ETVQTTQS(1)PTPVEK ;; 378.74 1.80E-163 1183360000 1351300 1757780 909270 496307 1302340 1821030 1782640 1658440 1604190 2024390 TRUE FALSE FALSE 1256580.848 1618487.111 1261363.695 1155427.778 1138988.373 1596369.833 1336604.617 1280849.415 1743242.481 1517469.567 0.828076474 1.066569733 0.83122833 0.76141743 0.750583997 1.051994628 0.880811481 0.84406926 1.148782498 1 20.53323615 -7.754407752 24.99822089 1.074391267 0.879561973 0.356470724 0.106120085 165.658164 588948.7356 0.077259625 0.02780602 1.76E-08 7.754407752 -0.194829294 ETVS(ph)PPCFDEYK ddPTM_HeLa_A485_30min_R1 1 ETVSPPCFDEYK 12 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 0 ET(0.006)VS(0.994)PPCFDEYK 98.337 0.0012646 179220000 164670 148990 119150 249140 210700 149510 240100 213220 139040 318500 TRUE FALSE FALSE 201300.2734 166413.0845 163228.5432 262749.8873 189721.9682 157338.1124 188800.6736 160927.4607 166944.0526 239103.8116 0.841894874 0.695986749 0.682668094 1.0988946 0.793471116 0.65803264 0.789618 0.673044313 0.698207409 1 17.8672776 -6.007260485 24.96582757 0.742826278 0.826834562 0.036989007 0.139472834 993.5017059 3416259.904 0.044413786 0.048424921 9.83E-07 6.007260485 0.084008284 ETVSEAPPLLFS(ph)DEEEKEAQLGVK ddPTM_HeLa_A485_30min_R1 3 ETVSEAPPLLFSDEEEKEAQLGVK 24 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK ;; 211.87 1.98E-29 249211000 317400 171814 155394 729620 386359 262687 503682 384032 230561 987530 TRUE FALSE FALSE 388004.535 191906.1527 212880.7071 769477.2931 347891.7414 276440.8851 396066.226 289847.5499 276832.4779 741356.9451 0.523370743 0.258857968 0.287150081 1.037930916 0.469263482 0.372885001 0.53424498 0.390968955 0.373413212 1 19.49980881 -10.35583282 3.392898225 1.003410298 0.473398747 0.367102646 0.207972171 156116585.5 218932745.6 5303767.324 0.053782237 4.41E-11 10.35583282 -0.530011551 ETVSEAPPLLFS(ph)DEEEKEAQLGVK ddPTM_HeLa_A486_30min_R1 3 ETVSEAPPLLFSDEEEKEAQLGVK 24 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVS(0.001)EAPPLLFS(0.999)DEEEKEAQLGVK ;; 191.22 3.79E-21 481460000 247075 298695 117366 252192 265409 436266 533420 471092 246827 563020 TRUE FALSE FALSE 229756.3184 275025.3204 162813.2584 587115.7211 232118.9284 382443.9365 399952.6741 363834.6355 268222.1631 422036.1274 0.544399646 0.65166298 0.385780382 1.391150385 0.549997769 0.906187674 0.947674022 0.862093579 0.635543134 1 18.68700698 ETVYCLNDDDETEVLKEDIIQGFR ddPTM_HeLa_A485_30min_R1 2 ETVYCLNDDDETEVLKEDIIQGFR 24 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 ; ; 139.26 9.88E-07 93329000 39557 43432 32507 55941 63409 45464 64314 65388 45757 79285 FALSE FALSE TRUE 48356.31818 48510.99459 44532.69203 58996.91518 57095.77732 47844.42474 50572.7885 49351.49048 54940.01019 59520.70863 0.812428469 0.815027168 0.748188203 0.991199812 0.959259032 0.803828211 0.84966711 0.829148234 0.923040257 1 15.86110408 -14 0.123817746 1.446186226 0.795992626 0.303030105 0.069800621 221.2294594 1.755219596 24.84421642 0.671807923 1.00E-14 14 -0.6501936 ETYYLSDS(ph)PLLGPPVGEPR ddPTM_HeLa_A485_30min_R1 1 ETYYLSDSPLLGPPVGEPR 19 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 ETYYLS(0.329)DS(0.671)PLLGPPVGEPR 148.52 1.76E-08 118050000 96000 124730 127580 100780 164760 121420 136540 150210 111490 137990 TRUE FALSE FALSE 117354.8688 139316.0885 174777.151 106285.3562 148355.9159 127777.3634 107367.1136 113370.762 133865.0204 103591.6325 1.132860502 1.344858509 1.687174406 1.026003294 1.432122579 1.233471858 1.036445811 1.094400766 1.292237772 1 16.66054795 -6.539449281 6.27528048 1.115304158 1.329932808 0.248137647 0.179114279 0.237444695 36.03913117 0.06739263 0.053370882 2.89E-07 6.539449281 0.21462865 ETYYLSDS(ph)PLLGPPVGEPR ddPTM_HeLa_A486_30min_R1 2 ETYYLSDSPLLGPPVGEPR 19 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 ETYYLSDS(1)PLLGPPVGEPR;ETYYLS(0.001)DS(0.999)PLLGPPVGEPR ; 183.53 4.04E-18 278290000 448600 482320 403860 211546 558220 489920 622000 563610 394410 561940 TRUE FALSE FALSE 417155.4566 444099.2066 560245.4077 492489.7789 488202.8424 429478.6515 466369.0212 435288.3065 428597.7764 421226.5664 0.990335107 1.054300089 1.330033413 1.169180242 1.159002972 1.019590609 1.107169059 1.033382843 1.017499395 1 18.6842369 -6.257564358 24.2242166 1.042092349 1.147892739 0.266662132 0.086330502 336.9178492 2106199.332 0.031190351 0.030006009 5.53E-07 6.257564358 0.10580039 EVAATEEDVTRLPS(ph)PT(ph)SPFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 2 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 2 0 EVAATEEDVT(0.004)RLPS(0.976)PT(0.728)S(0.272)PFS(0.015)S(0.004)LS(0.001)QDQAATSK;EVAATEEDVTRLPS(0.827)PT(0.651)S(0.444)PFS(0.063)S(0.013)LS(0.002)QDQAATSK ; 169.03 1.47E-14 624420000 169980 188241 120485 77524 191677 184465 238358 234718 158494 220405 TRUE FALSE FALSE 158065.2798 173324.0976 167140.0187 180479.7898 167635.0833 161707.5838 178718.3073 181277.8353 172232.3875 165214.1534 0.956729654 1.049087466 1.011656782 1.092399084 1.014653284 0.97877561 1.08173727 1.097229454 1.042479618 1 17.33397776 -6.785031588 24.99189093 1.06346404 1.021713716 0.147909533 0.042314768 416.6573696 441372.1891 0.017562229 0.011848156 1.64E-07 6.785031588 -0.041750324 EVAATEEDVTRLPS(ph)PTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_A485_30min_R1 3 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 2 0 EVAATEEDVTRLPS(0.984)PT(0.112)S(0.9)PFS(0.003)SLSQDQAATSK;EVAATEEDVT(0.002)RLPS(0.96)PT(0.222)S(0.784)PFS(0.026)S(0.005)LS(0.001)QDQAATSK;EVAATEEDVTRLPS(0.727)PT(0.331)S(0.938)PFS(0.002)S(0.001)LSQDQAATSK ;; 199.36 6.52E-29 794850000 229114.4 244710.2 209384.5 277715 280840 249786.8 369696.7 336060.2 226446.4 379560.6 TRUE FALSE FALSE 280080.1078 273326.9292 286844.5398 292885.8672 252878.5835 262865.2506 290707.9799 253640.909 271892.1154 284943.1277 0.982933367 0.959233274 1.006672953 1.027874824 0.887470372 0.922518303 1.020231589 0.890145732 0.954197834 1 18.12031447 -5.746586841 24.99995795 0.942829343 0.992574951 0.233257219 0.042768008 360.0689313 606069.5163 0.012638757 0.016248065 1.79E-06 5.746586841 0.049745608 EVAATEEDVTRLPS(ph)PTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 2 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 2 0 EVAATEEDVT(0.001)RLPS(0.996)PT(0.292)S(0.708)PFS(0.002)S(0.001)LSQDQAATSK;EVAATEEDVTRLPS(0.928)PT(0.108)S(0.963)PFS(0.001)SLSQDQAATSK ; 163.63 2.94E-14 583120000 223800 213740 143788 97458 245060 245020 258280 263280 184459 284990 TRUE FALSE FALSE 208112.7757 196802.464 199466.5644 226887.1493 214322.2897 214791.9236 193655.6122 203336.8914 200448.0546 213626.649 0.974189207 0.921244914 0.933715739 1.062073249 1.003256338 1.005454725 0.9065143 0.951832987 0.938310157 1 17.7047321 -9.779108437 13.84374942 1 0.966878444 0.048988846 0.04449214 0 0 0.046617836 0.011306486 1.66E-10 9.779108437 -0.033121556 EVAATEEDVTRLPS(ph)PTSPFSSLSQDQAATSK ddPTM_HeLa_A485_30min_R1 5 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EVAAT(0.002)EEDVT(0.002)RLPS(0.362)PT(0.253)S(0.253)PFS(0.059)S(0.059)LS(0.009)QDQAATSK;EVAATEEDVT(0.009)RLPS(0.693)PT(0.205)S(0.048)PFS(0.035)S(0.008)LS(0.002)QDQAATSK;EVAATEEDVT(0.008)RLPS(0.98)PT(0.01)S(0.001)PFSSLSQDQAATSK;EVAATEEDVTRLPS(0.824)PT(0.163)S(0.014)PFSSLSQDQAATSK;EVAATEEDVTRLPS(0.925)PT(0.062)S(0.013)PFSSLSQDQAATSK ;;;; 393.02 1.09E-193 10159870000 1414445 1570094 1355750 1624796 2024336 1755327 2103335 2123943 1492215 2268715 TRUE FALSE FALSE 1729083.41 1753702.835 1857298.342 1713554.491 1822786 1847233.207 1653940.295 1603042.649 1791688.863 1703166.103 1.015217134 1.029672228 1.090497479 1.006099457 1.070233841 1.084587818 0.971097471 0.941213336 1.051975412 1 20.69978771 -6.772939541 24.99832338 0.986172655 1.049337587 0.372884784 0.036828851 226.4424807 492221.5855 0.015181745 0.010332531 1.69E-07 6.772939541 0.063164931 EVAATEEDVTRLPS(ph)PTSPFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 3 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EVAATEEDVTRLPS(0.997)PT(0.003)SPFSSLSQDQAATSK;EVAATEEDVTRLPS(0.992)PT(0.007)S(0.001)PFSSLSQDQAATSK;EVAATEEDVTRLPS(0.985)PT(0.011)S(0.004)PFSS(0.001)LSQDQAATSK ;; 378.61 2.34E-170 9847000000 1293480 1342530 883550 545226 1444880 1382120 1585000 1610630 1109270 1407760 TRUE FALSE FALSE 1202813.732 1236143.033 1225684.222 1269313.682 1263649.677 1211608.087 1188416.236 1243924.709 1205422.417 1055247.733 1.139840147 1.171424486 1.161513248 1.202858478 1.197491014 1.148174072 1.126196436 1.17879875 1.142312254 1 20.0091503 -10.10889055 0.445425824 0.931436389 1.171190479 0.825181297 0.022749386 8.024349524 0.990531252 0.708766671 0.013647042 7.78E-11 10.10889055 0.239754091 EVAATEEDVTRLPSPTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_A485_30min_R1 1 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EVAATEEDVTRLPS(0.002)PT(0.17)S(0.828)PFSSLSQDQAATSK 269.16 1.20E-64 754700000 84032 111060 86831 95100 139210 95921 139810 143650 86999 140640 TRUE FALSE FALSE 102724.6285 124047.5009 118953.4002 100295.0722 125349.7636 100943.2752 109938.4514 108419.6123 104458.9013 105581.0363 0.972945825 1.174903233 1.126654979 0.949934531 1.187237481 0.95607392 1.041270812 1.026885282 0.989371813 1 16.68799121 -6.29237309 24.99776011 1.006810106 1.082584549 0.221035514 0.074531238 1123.990628 908301.3667 0.025402439 0.022404892 5.10E-07 6.29237309 0.075774443 EVAATEEDVTRLPSPTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 2 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EVAATEEDVTRLPS(0.001)PT(0.192)S(0.794)PFS(0.011)S(0.002)LSQDQAATSK;EVAATEEDVTRLPS(0.001)PT(0.167)S(0.832)PFS(0.001)SLSQDQAATSK ; 302.79 3.61E-93 1045480000 313140 294760 202505 117515 329130 305250 362650 385120 244450 379340 TRUE FALSE FALSE 291190.5031 271402.1441 280920.3593 273580.8589 287847.4464 267591.3586 271911.1343 297436.5831 265639.1228 284350.7949 1.024053768 0.954462407 0.987935903 0.962124474 1.012296964 0.941060702 0.956252415 1.046019876 0.934195112 1 18.11731231 -10.17923606 4.502165592 1.000004062 0.979863459 0.028356194 0.035433275 1.35E-06 2.46E-07 0.032007931 0.007761498 6.62E-11 10.17923606 -0.020140603 EVAATEEDVTRLPSPTSPFS(ph)SLSQDQAATSK ddPTM_HeLa_A486_30min_R1 1 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 EVAATEEDVTRLPS(0.008)PT(0.079)S(0.317)PFS(0.485)S(0.106)LS(0.005)QDQAATSK 169.18 8.09E-15 394470000 114160 136780 83458 49610 157190 138810 162330 157270 91633 140650 TRUE FALSE FALSE 106157.9735 125941.0547 115775.1727 115494.5872 137473.7645 121685.0335 121713.317 121463.0542 99575.82222 105430.3245 1.006901705 1.194542986 1.098120234 1.095458898 1.303930013 1.154174893 1.15444316 1.152069433 0.944470414 1 16.68593036 -7.756498136 24.99868363 0.97223517 1.149319823 0.471392721 0.073043768 93.26316923 471854.8099 0.052550507 0.018455547 1.75E-08 7.756498136 0.177084653 EVADIFNAPS(ph)DDEEFVGFR ddPTM_HeLa_A485_30min_R1 6 EVADIFNAPSDDEEFVGFR 19 0 Q96GN5-5;Q96GN5-2;Q96GN5 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR ;;;;; 267.32 1.34E-58 299461200 295130 331185 302694 345405 290246 276390 296302 262393 278789.5 412996 TRUE FALSE FALSE 360780.6503 369914.2048 414673.1067 364273.6005 261348.0891 290861.353 232994.6571 198040.7053 334739.9954 310043.6978 1.163644521 1.193103448 1.337466653 1.174910515 0.842939531 0.93813019 0.751489738 0.638750946 1.079654248 1 18.24211204 -5.718978674 4.695066481 0.852786456 1.230913489 0.643474681 0.12442035 0.118854837 5.785638024 0.037698312 0.047800383 1.91E-06 5.718978674 0.378127033 EVADIFNAPS(ph)DDEEFVGFR ddPTM_HeLa_A486_30min_R1 4 EVADIFNAPSDDEEFVGFR 19 0 Q96GN5-5;Q96GN5-2;Q96GN5 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR ;;; 243.87 9.38E-46 357949000 127601 159446 113470 36004 123267 130878 134104 134455 139774 151334 TRUE FALSE FALSE 118656.8288 146810.9183 157408.6228 83819.13154 107805.7034 114731.603 100549.7608 103842.5316 151889.7229 113438.9814 1.045996953 1.294184032 1.387606103 0.738891786 0.950340898 1.011394863 0.886377501 0.915404303 1.338955278 1 16.79155696 -5.249525317 24.99934893 0.970317138 1.247754524 0.357404178 0.162757765 814.7144428 1709516.815 0.044148963 0.075698786 5.63E-06 5.249525317 0.277437386 EVAEAATGEDAS(ph)SPPPKTEAASDPQHPAASEGAAAAAASPPLLR ddPTM_HeLa_A485_30min_R1 1 EVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLR 44 1 Q99536-3;Q99536;K7ERT7 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 1 0 EVAEAAT(0.002)GEDAS(0.417)S(0.375)PPPKT(0.103)EAAS(0.103)DPQHPAASEGAAAAAASPPLLR 91.472 1.93E-05 737280000 134910 131270 99911 123450 144500 134720 155540 155310 118960 179400 TRUE FALSE FALSE 164920.2641 146620.8846 136872.2365 130193.7609 130113.0726 141773.7309 122307.6084 117219.979 142834.1808 134678.8816 1.224544354 1.088670197 1.016285812 0.966697669 0.966098553 1.052679746 0.908142441 0.870366442 1.06055366 1 17.03916412 -4.157249179 1.07031832 0.967082769 1.399616119 0.666173347 0.05484867 1.252914603 1.02188071 0.017617621 0.64854843 6.96E-05 4.157249179 0.432533351 EVAEAATGEDAS(ph)SPPPKTEAASDPQHPAASEGAAAAAASPPLLR ddPTM_HeLa_A486_30min_R1 2 EVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLR 44 1 Q99536-3;Q99536;K7ERT7 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 1 0 EVAEAAT(0.01)GEDAS(0.517)S(0.47)PPPKT(0.002)EAAS(0.002)DPQHPAASEGAAAAAASPPLLR;EVAEAAT(0.043)GEDAS(0.478)S(0.478)PPPKTEAASDPQHPAASEGAAAAAASPPLLR ; 142.59 2.99E-11 1098040000 185375 190611 118264 47646 178382 192490 206074 198813 170258 182287 TRUE FALSE FALSE 172381.1698 175506.2902 164058.988 110922.2959 156007.6662 168742.5409 154512.1056 153547.62 185016.1005 136641.1487 1.261561187 1.284432192 1.200655802 0.811778128 1.141732689 1.234932101 1.130787519 1.123728989 1.354029165 1 17.06003248 -8.758427296 0.011213596 8.38E-07 2.237519188 0.05468766 0.144131384 10076.08983 39.86873707 4112.418861 3839.493487 1.74E-09 8.758427296 2.23751835 EVAEAATGEDASS(ph)PPPKTEAASDPQHPAASEGAAAAAASPPLLR ddPTM_HeLa_A485_30min_R1 1 EVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLR 44 1 Q99536-3;Q99536;K7ERT7 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 1 0 EVAEAAT(0.005)GEDAS(0.148)S(0.825)PPPKT(0.011)EAAS(0.011)DPQHPAASEGAAAAAASPPLLR 212.43 1.43E-31 587970000 156810 169450 138210 166880 197150 171200 214180 214030 162900 234770 TRUE FALSE FALSE 191691.8435 189265.7035 189339.6304 175996.2318 177521.0538 180163.7673 168418.6933 161538.8069 195592.5358 176246.1596 1.087636995 1.073871362 1.074290815 0.998581939 1.0072336 1.022228045 0.955587876 0.916552209 1.109769065 1 17.4272323 -5.252696149 4.798814291 0.996810282 1.079186136 0.362559392 0.046657229 0.198031096 13.32311883 0.012947156 0.021565683 5.59E-06 5.252696149 0.082375854 EVAEAATGEDASS(ph)PPPKTEAASDPQHPAASEGAAAAAASPPLLR ddPTM_HeLa_A486_30min_R1 2 EVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLR 44 1 Q99536-3;Q99536;K7ERT7 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 1 0 EVAEAATGEDAS(0.181)S(0.819)PPPKTEAASDPQHPAASEGAAAAAASPPLLR;EVAEAATGEDAS(0.047)S(0.953)PPPKTEAASDPQHPAASEGAAAAAASPPLLR ; 290.53 3.81E-95 1115260000 731740 776670 516900 140427 694800 721780 885160 825230 626770 783770 TRUE FALSE FALSE 680448.8047 715123.8406 717057.5231 326921.1528 607651.7052 632734.1221 663683.6057 637343.1436 681098.9283 587508.8905 1.158193205 1.217213649 1.220504974 0.556453116 1.034285123 1.076977953 1.129657128 1.084822977 1.159299781 1 19.16425116 EVAENQQNQS(ph)SDPEEEKGSQPPPAAESQSSLRR ddPTM_HeLa_A485_30min_R1 2 EVAENQQNQSSDPEEEKGSQPPPAAESQSSLRR 33 2 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVAENQQNQS(0.5)S(0.5)DPEEEKGSQPPPAAESQSSLRR;EVAENQQNQS(0.544)S(0.441)DPEEEKGS(0.015)QPPPAAESQSSLRR ; 96.563 7.18E-05 1771130000 339430 294460 254150 513390 398880 408930 501750 504840 313120 715570 TRUE FALSE FALSE 414935.0325 328894.5355 348170.6611 541435.1957 359166.1066 430340.9425 394547.0136 381027.1984 375960.3119 537191.5681 0.772415386 0.612248135 0.648131285 1.007899654 0.668599673 0.801094001 0.73446241 0.709294823 0.699862645 1 19.03507713 -11.06041859 2.548996407 1.371381461 0.739522176 0.359410509 0.104399557 22807537.87 7411337.168 49337319.98 0.025856386 8.70E-12 11.06041859 -0.631859284 EVAENQQNQSSDPEEEKGSQPPPAAES(ph)QSSLRR ddPTM_HeLa_A485_30min_R1 2 EVAENQQNQSSDPEEEKGSQPPPAAESQSSLRR 33 2 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVAENQQNQSSDPEEEKGS(0.024)QPPPAAES(0.351)QS(0.351)S(0.274)LRR;EVAENQQNQSSDPEEEKGSQPPPAAES(0.462)QS(0.318)S(0.22)LRR ; 186.24 2.45E-21 1780880000 512600 310530 310200 606040 463070 374690 603460 527730 469250 946640 TRUE FALSE FALSE 626626.1016 346843.7822 424955.8885 639146.4306 416965.1249 394308.189 474525.8412 398303.3901 563424.1708 710660.0696 0.881752231 0.488058633 0.597973499 0.899370118 0.586729356 0.554847818 0.667725487 0.560469635 0.792818107 1 19.43880011 -8.030912748 5.14439632 0.999858743 0.650869725 0.408249296 0.128961223 0.177551384 17.33351162 0.121491221 0.0316406 9.31E-09 8.030912748 -0.348989018 EVAENQQNQSSDPEEEKGSQPPPAAES(ph)QSSLRR ddPTM_HeLa_A486_30min_R1 1 EVAENQQNQSSDPEEEKGSQPPPAAESQSSLRR 33 2 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVAENQQNQSSDPEEEKGSQPPPAAES(0.555)QS(0.29)S(0.154)LRR 147.74 7.62E-10 680360000 215520 180640 117920 98341 185570 270730 272810 324880 193770 297540 TRUE FALSE FALSE 200413.1609 166325.4285 163581.782 228942.8179 162294.0802 237330.0852 204550.0525 250911.9161 210566.1396 223034.0473 0.898576533 0.745740081 0.733438612 1.026492684 0.727665046 1.064098007 0.917124784 1.12499378 0.944098635 1 17.76690444 -6.270740621 24.99417366 1.012066515 0.827856123 0.458963394 0.099695962 614.512632 1651305.765 0.033786544 0.030202008 5.36E-07 6.270740621 -0.184210392 EVAES(ph)PRPR ddPTM_HeLa_A485_30min_R1 2 EVAESPRPR 9 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 EVAES(1)PRPR;EVAES(1)PRPR ; 143 5.51E-05 2001700000 987118 1371960 1126476 884163 1392880 1306340 1253370 1326380 996481 1232250 TRUE FALSE FALSE 1206698.994 1532398.788 1543206.349 932462.5859 1254199.977 1374737.942 985577.2604 1001083.225 1196465.596 925072.7529 1.304436856 1.65651705 1.668199981 1.00798838 1.355785232 1.486086298 1.065405134 1.082167021 1.293374594 1 19.81920731 -6.046368755 0.351429926 1.028941296 1.611570185 0.347639294 0.194113514 2.349452821 0.550744012 0.230203756 0.522350084 8.99E-07 6.046368755 0.582628889 EVAES(ph)PRPR ddPTM_HeLa_A486_30min_R1 2 EVAESPRPR 9 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 EVAES(1)PRPR;EVAES(1)PRPR ; 154.15 2.33E-05 5160400000 1918600 2467600 2333400 840400 2853100 1815340 2169200 2101900 1981160 2037120 TRUE FALSE FALSE 1784116.048 2272058.389 3236954.971 1956493.671 2495237.594 1591381.808 1626443.217 1623343.254 2152888.544 1527011.893 1.168370761 1.487911391 2.119796831 1.281256342 1.634065593 1.042154168 1.065114964 1.06308488 1.409870188 1 20.54227987 -6.261909273 24.99977175 1.116804517 1.553509304 0.400803437 0.257796129 44.98443229 2393264.64 0.089206659 0.083571957 5.47E-07 6.261909273 0.436704787 EVAGMDYLAVPS(ph)PLAWSK ddPTM_HeLa_A485_30min_R1 2 EVAGMDYLAVPSPLAWSK 18 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 EVAGMDYLAVPS(0.999)PLAWS(0.001)K;EVAGMDYLAVPS(1)PLAWSK ; 132.64 6.74E-06 95108000 235480 238930 209930 244170 319260 288770 333030 374260 218974 335700 TRUE FALSE FALSE 287861.7136 266870.7851 287591.8429 257508.3888 287473.3534 303889.5507 261875.4199 282472.1482 262920.0733 252016.1681 1.142235103 1.058943111 1.141164256 1.021793128 1.140694089 1.20583355 1.039121505 1.12084931 1.043266689 1 17.94315677 -7.943857543 3.338324623 1.000180963 1.107396995 0.318195922 0.052713484 0.254913035 6.009151967 0.049643197 0.013227336 1.14E-08 7.943857543 0.107216032 EVAGMDYLAVPS(ph)PLAWSK ddPTM_HeLa_A486_30min_R1 2 EVAGMDYLAVPSPLAWSK 18 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 EVAGMDYLAVPS(1)PLAWSK;EVAGMDYLAVPS(1)PLAWSK ; 168.69 3.22E-12 80497000 384110 342530 230140 114914 361090 320190 326750 375470 278290 392450 TRUE FALSE FALSE 357185.8725 315386.6753 319256.3714 267525.5994 315798.7252 280688.2133 244993.694 289983.6775 302412.4013 294177.9656 1.214182958 1.072094828 1.085249097 0.909400536 1.07349551 0.954144246 0.832807765 0.985742344 1.027991341 1 18.16632966 -3.918735232 0.739526152 0.960888264 1.489348197 0.563208796 0.066283604 3.238067177 0.955105894 0.02690727 1.593053438 0.000120577 3.918735232 0.528459932 EVASK(ac)DMER ddPTM_HeLa_A486_30min_R1 1 EVASKDMER 9 1 O15381-2;O15381;O15381-3;O15381-4;O15381-5 O15381-2 NVL Nuclear valosin-containing protein-like 0 1 EVASK(1)DMER 103.56 0.029194 170420000 159360 372490 377820 115540 593650 406040 445290 429740 394680 290810 FALSE TRUE FALSE 148189.6869 342972.5358 524122.0224 268982.9591 519188.8814 355946.9131 333873.7322 331897.5832 428891.1802 217989.2831 0.679802625 1.573345858 2.404347658 1.233927444 2.381717459 1.632864277 1.531606175 1.522540826 1.967487456 1 17.73389768 -6.525245032 24.0477845 1.553708078 1.702281195 0.011137797 0.521079537 292.8049795 2975539.694 0.196957957 0.153648638 2.98E-07 6.525245032 0.148573118 EVCFTIENKT(ph)PQGR ddPTM_HeLa_A485_30min_R1 1 EVCFTIENKTPQGR 14 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 EVCFTIENKT(1)PQGR 116.61 0.00018212 238840000 312660 314080 262450 409270 490010 378990 560790 544220 325270 619850 TRUE FALSE FALSE 382210.1383 350808.9239 359541.1765 431627.3838 441222.8839 398833.3304 440972.6353 410749.1917 390548.7054 465332.8025 0.821369429 0.753888232 0.772653839 0.927567069 0.948187795 0.857092662 0.947650011 0.882699843 0.839289006 1 18.82790336 -5.258673619 24.9360935 0.91012873 0.779762265 0.620562261 0.04719308 150.0229227 1352600.198 0.012635 0.020692045 5.51E-06 5.258673619 -0.130366465 EVCFTIENKT(ph)PQGR ddPTM_HeLa_A486_30min_R1 1 EVCFTIENKTPQGR 14 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 EVCFTIENKT(1)PQGR 111.77 0.00029162 163100000 223390 253330 161740 126220 259170 307270 359260 360770 228870 379950 TRUE FALSE FALSE 207731.5146 233255.2082 224370.0595 293846.5388 226662.4819 269362.1515 269369.3481 278630.5466 248708.6359 284808.0469 0.729373755 0.818990933 0.787793961 1.031735381 0.79584297 0.945767349 0.945792617 0.978309951 0.873250031 1 18.11963038 -2.705704929 0.39883424 0.955338185 9.40E-14 0.510105607 0.06880687 15.13288865 0.71168574 0.049413888 8.925957202 0.001969224 2.705704929 -0.955338185 EVDATS(ph)PAPSTSSTVK ddPTM_HeLa_A485_30min_R1 4 EVDATSPAPSTSSTVK 16 0 Q16666-3;Q16666-2;Q16666;H3BM18;X6RHM1;Q16666-6 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 EVDAT(0.113)S(0.77)PAPS(0.04)T(0.063)S(0.008)S(0.002)T(0.003)VK;EVDATS(0.999)PAPSTSSTVK;EVDATS(0.998)PAPST(0.001)SSTVK;EVDAT(0.001)S(0.999)PAPS(0.001)TSSTVK ;;; 264.03 7.26E-51 1852930000 1606250 1549760 1282470 1946700 1991120 1663350 2196110 1983890 1540830 3220300 TRUE FALSE FALSE 1963554.771 1730990.951 1756909.021 2053043.292 1792877.102 1750440.434 1726893.158 1497337.867 1850060.448 2417538.475 0.812212418 0.716013817 0.726734668 0.849228797 0.741612644 0.724058976 0.71431879 0.619364648 0.765266186 1 21.20510742 -8.037689265 24.18013511 1.000000001 0.736476028 0.646642092 0.057748914 3124.181583 2004363.547 0.058297118 0.015052251 9.17E-09 8.037689265 -0.263523973 EVDATS(ph)PAPSTSSTVK ddPTM_HeLa_A486_30min_R1 2 EVDATSPAPSTSSTVK 16 0 Q16666-3;Q16666-2;Q16666;H3BM18;X6RHM1;Q16666-6 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 EVDATS(0.999)PAPSTSSTVK;EVDATS(0.974)PAPS(0.021)T(0.004)SSTVK ; 268.93 2.12E-51 1375970000 1902740 2152050 1346590 811210 2087780 2252200 2449800 2458600 1873420 2492400 TRUE FALSE FALSE 1769367.752 1981513.72 1868025.711 1888537.876 1825911.165 1974346.463 1836834.129 1898830.451 2035809.554 1868286.817 0.947053598 1.060604668 0.999860243 1.010839374 0.977318444 1.056768396 0.983164957 1.016348471 1.089666498 1 20.83328452 -7.544913357 24.98144345 1.04755803 1.007561908 0.142173327 0.038093167 418.3354034 474273.1657 0.023569859 0.008910258 2.85E-08 7.544913357 -0.039996121 EVDEDS(ph)EPER ddPTM_HeLa_A485_30min_R1 4 EVDEDSEPER 10 0 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EVDEDS(1)EPER;EVDEDS(1)EPER;EVDEDS(1)EPER;EVDEDS(1)EPER ;;; 218.94 6.63E-17 7951700000 3274450 4020440 3395720 3813530 3579100 3638370 4132240 3933120 3369360 4749830 TRUE FALSE FALSE 4002840.106 4490595.485 4651938.136 4021853.488 3222752.237 3828869.427 3249353.167 2968516.153 4045559.646 3565784.795 1.122569178 1.259356844 1.304604289 1.127901351 0.903798861 1.073780289 0.91125891 0.832500087 1.134549581 1 21.7657882 -5.569049667 4.601740035 0.970273913 1.230788759 0.610128907 0.091603868 0.127185285 5.923474016 0.027014929 0.036058199 2.70E-06 5.569049667 0.260514846 EVDEDS(ph)EPER ddPTM_HeLa_A486_30min_R1 3 EVDEDSEPER 10 0 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EVDEDS(1)EPER;EVDEDS(1)EPER;EVDEDS(1)EPER ;; 225.04 3.93E-17 8370400000 2710830 3045900 2301910 1045970 2617580 2732750 3098580 2801620 2676480 3384850 TRUE FALSE FALSE 2520814.816 2804531.791 3193271.199 2435071.02 2289258.708 2395611.09 2323282.511 2163752.285 2908479.441 2537261.528 0.993517928 1.105338082 1.258550277 0.959724094 0.902255713 0.94417192 0.915665368 0.852790404 1.146306523 1 21.2748408 -5.402134514 9.57392147 0.948136459 1.11754799 0.368025056 0.094682863 0.358889908 26.73354218 0.026312615 0.039041094 3.96E-06 5.402134514 0.16941153 EVDEDS(ph)EPEREVR ddPTM_HeLa_A485_30min_R1 3 EVDEDSEPEREVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR ;; 169.92 2.26E-12 7272420000 754090 1094140 1251400 1061420 2026010 1348540 1831950 2373100 1317740 1562580 TRUE FALSE FALSE 921834.7189 1222090.155 1714344.935 1119402.687 1824293.331 1419147.469 1440538.917 1791093.504 1582198.331 1173057.563 0.785839287 1.041798965 1.461432916 0.954260662 1.555160964 1.209785021 1.228020655 1.526859005 1.348781493 1 20.16184238 -4.51476192 3.88949703 1.297254072 0.817991483 0.401213678 0.192682752 0.193359262 6.383117495 0.047024953 0.182623187 3.06E-05 4.51476192 -0.479262589 EVDEDS(ph)EPEREVR ddPTM_HeLa_A486_30min_R1 3 EVDEDSEPEREVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR ;; 188.47 1.15E-17 8243450000 981280 1149690 1236660 534623 1997710 1206940 1606030 1678130 1038350 1179630 TRUE FALSE FALSE 912497.3393 1058584.377 1715527.871 1244629.362 1747138.584 1058040.014 1204184.307 1296056.432 1128355.014 884242.9699 1.031953174 1.197164595 1.940109143 1.407564894 1.975858043 1.196548969 1.361825141 1.465724327 1.276068968 1 19.75408332 EVDEQMLNVQNK ddPTM_HeLa_A485_30min_R1 1 EVDEQMLNVQNK 12 0 Q5JP53;P07437;Q5ST81;P68371 Q5JP53;P68371 TUBB;TUBB4B Tubulin beta chain;Tubulin beta-4B chain 0 0 142.43 3.04E-06 89508000 75613 80228 77549 111210 97605 83895 121860 130170 69785 161800 FALSE FALSE TRUE 92432.85099 89609.96671 106237.6022 117285.1207 87887.10349 88287.61247 95823.6155 98245.6034 83790.20939 121466.2377 0.760975665 0.737735591 0.874626597 0.965577949 0.723551706 0.726848992 0.788890949 0.808830546 0.68982304 1 16.89019584 -10.32728315 5.90893832 1.000022253 0.789901336 0.404406315 0.077686211 2.42E-05 2.75E-06 0.079802657 0.019352939 4.71E-11 10.32728315 -0.210120916 EVDEQMLNVQNK ddPTM_HeLa_A486_30min_R1 1 EVDEQMLNVQNK 12 0 Q5JP53;P07437;Q5ST81;P68371 Q5JP53;P68371 TUBB;TUBB4B Tubulin beta chain;Tubulin beta-4B chain 0 0 158.41 2.69E-07 44741000 66702 79048 62624 34434 96120 104660 106270 98039 67899 98510 FALSE FALSE TRUE 62026.53425 72783.94859 86873.68993 80164.0922 84063.73332 91748.1133 79680.12199 75717.65988 73784.53999 73842.45481 0.839984727 0.985665344 1.176473482 1.085609795 1.13842008 1.242484605 1.079055703 1.025394674 0.999215698 1 16.17216289 -4.459279955 3.376464999 1.100245773 0.845979699 0.526515058 0.074233243 0.204714856 4.235939558 0.020247512 0.100480171 3.47E-05 4.459279955 -0.254266074 EVDGLLTS(ph)EPMGSPVSSK ddPTM_HeLa_A485_30min_R1 1 EVDGLLTSEPMGSPVSSK 18 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EVDGLLT(0.023)S(0.877)EPMGS(0.099)PVSSK 120.24 1.44E-06 0 45558 62924 83952 60530 87959 61930 71067 72815 68908 69747 TRUE FALSE FALSE 55692.21993 70282.41443 115009.3383 63836.60063 79201.49312 65172.55904 55882.95489 54957.00708 82737.20354 52360.3565 1.063633322 1.342282962 2.196496472 1.219178113 1.51262326 1.244692806 1.067276058 1.049591919 1.580149737 1 15.6761873 -6.346038032 3.872052447 1.175657695 1.48781377 0.162885145 0.316137558 0.445278358 12.53112453 0.118179225 0.104095171 4.51E-07 6.346038032 0.312156075 EVDGLLTSEPMGS(ph)PVSSK ddPTM_HeLa_A485_30min_R1 11 EVDGLLTSEPMGSPVSSK 18 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EVDGLLTS(0.017)EPMGS(0.982)PVSSK;EVDGLLTSEPMGS(0.999)PVS(0.001)SK;EVDGLLTSEPMGS(0.999)PVS(0.001)SK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(0.794)PVS(0.193)S(0.013)K;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK ;;;;;;;;;; 350.49 2.95E-115 10434994000 8559440 8152877 7001008 10715780 10921280 9063520 12557530 12351310 8600900 14100110 TRUE FALSE FALSE 10463457.9 9106285.045 9590972.195 11301155.93 9833919.016 9538071.892 9874511.13 9322131.856 10327021.74 10585212.07 0.988497711 0.860283666 0.906072749 1.067636232 0.929024279 0.901075182 0.932859074 0.88067502 0.975608393 1 23.33554684 -7.989997403 24.3570766 1.000000025 0.932862689 0.140236361 0.055671636 232.4838097 566112.5795 0.054777467 0.014143481 1.02E-08 7.989997403 -0.067137336 EVDGLLTSEPMGS(ph)PVSSK ddPTM_HeLa_A486_30min_R1 12 EVDGLLTSEPMGSPVSSK 18 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EVDGLLTSEPMGS(0.998)PVS(0.001)SK;EVDGLLTSEPMGS(0.997)PVS(0.003)SK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(0.996)PVS(0.003)SK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(0.996)PVS(0.003)S(0.001)K;EVDGLLTSEPMGS(0.999)PVS(0.001)SK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(0.996)PVS(0.003)SK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(1)PVSSK ;;;;;;;;;;; 346.63 3.83E-115 9614422000 9191271 10010144 6243593 3854333 9806087 10184293 12197640 12061728 8404886 11600412 TRUE FALSE FALSE 8547010.367 9216903.733 8661279.419 8973082.011 8576116.13 8927858.476 9145661.459 9315535.84 9133428.286 8695593.329 0.982912844 1.059951102 0.996053874 1.031911414 0.986260029 1.026710673 1.051758185 1.071293871 1.050351361 1 23.05185304 -6.617411823 4.488952268 1.049056511 1.013727333 0.220096166 0.027225212 0.285207726 10.21664415 0.01017008 0.007762079 2.41E-07 6.617411823 -0.035329178 EVDGLLTSEPMGSPVS(ph)SK ddPTM_HeLa_A486_30min_R1 1 EVDGLLTSEPMGSPVSSK 18 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 EVDGLLTSEPMGS(0.184)PVS(0.749)S(0.066)K 313.56 3.32E-89 950310000 679510 694130 450650 302430 757220 735140 840350 842570 642300 887030 TRUE FALSE FALSE 631879.858 639124.6108 625153.7488 704072.324 662242.4068 644445.9012 630085.5417 650735.2042 697975.0812 664911.9144 0.950321154 0.961216963 0.940205364 1.058895635 0.995985171 0.969219963 0.947622577 0.978678815 1.049725634 1 19.3428037 EVDKT(ph)PPPQPPLISSMDSISQK ddPTM_HeLa_A485_30min_R1 1 EVDKTPPPQPPLISSMDSISQK 22 1 Q92625;A0A3B3ISP1;A0A3B3ITU5 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 EVDKT(1)PPPQPPLISSMDSISQK 87.489 0.0022214 114770000 155030 148560 126420 217040 221430 199520 295360 315460 187510 306450 TRUE FALSE FALSE 189515.8887 165932.7997 173188.0188 228896.3456 199383.6517 209966.5587 232253.9231 238092.9404 225141.5371 230057.6548 0.823775626 0.721266153 0.752802679 0.994952095 0.866668192 0.9126693 1.0095466 1.034927269 0.978630932 1 17.81163594 -5.56249687 0.720065364 1.007028143 0.737478361 0.691943289 0.059569854 0.48933028 0.511408328 0.03494074 0.081678884 2.74E-06 5.56249687 -0.269549782 EVDKT(ph)PPPQPPLISSMDSISQK ddPTM_HeLa_A486_30min_R1 2 EVDKTPPPQPPLISSMDSISQK 22 1 Q92625;A0A3B3ISP1;A0A3B3ITU5 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 EVDKT(1)PPPQPPLISSMDSISQK;EVDKT(1)PPPQPPLISSMDSISQK ; 74.516 0.0067015 166679000 136371 137578 78252 76229 160846 167028 202918 193996 92795 185819 TRUE FALSE FALSE 126812.0971 126675.8182 108553.2701 177464.9644 140671.1949 146421.7836 152145.7702 149827.3457 100838.5453 139288.7129 0.910426225 0.909447834 0.779340033 1.274080007 1.009925298 1.051210687 1.09230509 1.07566035 0.723953458 1 17.08771883 -5.215736246 24.99998315 1.037938176 0.870709029 0.250367165 0.131360134 612.1215862 334834.6253 0.03518781 0.060946824 6.09E-06 5.215736246 -0.167229147 EVDPLVYNMSHEDPGNVS(ph)YSEIGGLSEQIR ddPTM_HeLa_A485_30min_R1 1 EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR 30 0 H0YJC0;A0A087X2I1;P62333;H0YJS8 H0YJC0 PSMC6 26S protease regulatory subunit 10B 1 0 EVDPLVYNMSHEDPGNVS(0.95)YS(0.05)EIGGLSEQIR 114.61 6.39E-05 73564000 23816 27002 30341 20097 35195 26994 31401 35026 23723 25075 TRUE FALSE FALSE 29113.78704 30159.64901 41565.39849 21194.84822 31690.86222 28407.3641 24691.91983 26435.81858 28483.9885 18824.26397 1.546609582 1.602168832 2.208075628 1.125932374 1.683511359 1.509082328 1.311707053 1.40434806 1.513152841 1 14.20030584 -11.02793746 0.103488689 1.21E-06 2.022949802 0.34793384 0.252987136 85.60632726 1.24420759 25.52536733 4.888362259 9.38E-12 11.02793746 2.022948595 EVDPLVYNMSHEDPGNVS(ph)YSEIGGLSEQIR ddPTM_HeLa_A486_30min_R1 2 EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR 30 0 H0YJC0;A0A087X2I1;P62333;H0YJS8 H0YJC0 PSMC6 26S protease regulatory subunit 10B 1 0 EVDPLVYNMSHEDPGNVS(0.965)YS(0.035)EIGGLSEQIR;EVDPLVYNMSHEDPGNVS(0.566)YS(0.434)EIGGLSEQIR ; 127.17 2.59E-06 104162000 34984 41728 43707 13437.7 52783 38961 40783 41999 36509 39013 TRUE FALSE FALSE 32531.80226 38421.32131 60631.52091 31283.6447 46162.46396 34154.38795 30578.66204 32436.74453 39673.62952 29243.89087 1.112430709 1.313823851 2.073305539 1.069749742 1.578533587 1.167915313 1.045642735 1.109180194 1.35664675 1 14.83584765 -6.359521073 6.533335628 1.133755474 1.438318536 0.221958733 0.275107324 0.394765075 22.34376797 0.097564265 0.08582063 4.37E-07 6.359521073 0.304563062 EVDWSQNTATFS(ph)PAISPTHPGEGLVLRPLCTADLNR ddPTM_HeLa_A486_30min_R1 1 EVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNR 36 1 G3V4W4;Q96EK6 G3V4W4 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase 1 0 EVDWSQNTAT(0.007)FS(0.993)PAISPTHPGEGLVLRPLCTADLNR 90.773 4.66E-05 40205000 5220.2 4669.6 5718.7 2097.8 8289 6531 9231.6 6077.7 5483.9 5726.6 TRUE FALSE FALSE 4854.290937 4299.56389 7933.133792 4883.784417 7249.316328 5725.271622 6921.756038 4693.940385 5959.248867 4292.622086 1.130845166 1.001617148 1.84808577 1.137715904 1.688785125 1.333746952 1.612477385 1.093490247 1.388253787 1 12.06764345 -8.394519981 1.007088717 1.00312677 1.38171112 0.138791778 0.267233336 2.644587131 4.45261761 0.251958699 0.08090536 4.03E-09 8.394519981 0.37858435 EVDYSDS(ph)LTEK ddPTM_HeLa_A485_30min_R1 1 EVDYSDSLTEK 11 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 EVDYS(0.018)DS(0.98)LT(0.001)EK 104.17 0.0008096 181110000 203250 159650 134780 276910 242550 201100 300470 251170 191970 421520 TRUE FALSE FALSE 248462.2613 178319.6787 184640.7307 292036.8921 218400.8704 211629.285 236272.1299 189570.1637 230496.6181 316442.8215 0.78517269 0.563513111 0.583488448 0.922874125 0.690174829 0.668775749 0.746650307 0.59906609 0.728398948 1 18.27158532 -8.039559394 22.42862407 1.000000003 0.693190239 0.44676281 0.101187249 1830.755892 1037966.298 0.098268266 0.025372757 9.13E-09 8.039559394 -0.306809763 EVDYSDS(ph)LTEK ddPTM_HeLa_A486_30min_R1 1 EVDYSDSLTEK 11 0 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 EVDYS(0.001)DS(0.998)LT(0.001)EK 180.84 1.97E-10 179270000 289200 293540 164220 138170 273030 336250 391460 401710 245670 439780 TRUE FALSE FALSE 268928.5734 270278.8213 227810.382 321666.7427 238784.0315 294766.8937 293512.5676 310249.4023 266964.8734 329656.2255 0.815784907 0.819880835 0.69105439 0.975764199 0.724342551 0.894164499 0.890359547 0.941130118 0.809828096 1 18.3306028 -13.99989915 0.056056649 1.644272384 0.554448375 0.315810291 0.080433413 516.9453675 2.123056778 46.55733767 8.694381388 1.00E-14 13.99989915 -1.089824009 EVEDKES(ph)EGEEEDEDEDLSK ddPTM_HeLa_A485_30min_R1 7 EVEDKESEGEEEDEDEDLSK 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK ;;;;;; 315.37 3.81E-102 35864810000 7189630 3468410 2218426 17500450 5701890 5376920 10947230 7551770 3686780 21676770 TRUE FALSE FALSE 8788938.39 3874010.378 3039114.094 18456455.27 5134189.811 5658447.217 8608264.88 5699686.567 4426682.929 16273150.17 0.540088323 0.23806149 0.186756348 1.1341661 0.315500672 0.34771677 0.52898577 0.350250966 0.272023725 1 23.95599022 -10.23125485 4.841010665 1.000106995 0.436532018 0.301861048 0.257834731 0.00029861 4.74E-05 0.250372436 0.060712795 5.87E-11 10.23125485 -0.563574977 EVEDKES(ph)EGEEEDEDEDLSK ddPTM_HeLa_A486_30min_R1 7 EVEDKESEGEEEDEDEDLSK 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK ;;;;;; 318.74 2.65E-102 43289690000 7554690 6192840 1880837 8059140 4484270 9231810 14433060 11677380 4710320 19284580 TRUE FALSE FALSE 7025145.243 5702096.804 2609147.457 18762085.21 3921811.042 8092883.144 10821755.73 9018695.489 5118614.33 14455595.65 0.485981029 0.394456025 0.180493943 1.297911595 0.27130055 0.559844322 0.748620534 0.62388958 0.354092246 1 23.78512472 -11.63109877 2.067166737 9.999407984 0.553714298 0.172619697 0.29759557 6904463.784 327930.2393 291861323.7 0.076260768 2.34E-12 11.63109877 -9.445693687 EVEDKES(ph)EGEEEDEDEDLSKYK ddPTM_HeLa_A486_30min_R1 2 EVEDKESEGEEEDEDEDLSKYK 22 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EVEDKES(1)EGEEEDEDEDLSKYK;EVEDKES(1)EGEEEDEDEDLSKYK ; 227.96 1.39E-36 1162540000 681980 496430 173961 750230 404830 746500 1229750 1028060 337623 1812700 TRUE FALSE FALSE 634176.7237 457091.0788 241323.358 1746573.355 354052.4465 654404.4199 922053.543 793993.1804 366888.4335 1358788.121 0.466722305 0.33639614 0.177601904 1.285390509 0.260564867 0.481608876 0.678585225 0.584339212 0.270011511 1 20.37388908 -11.47509955 2.087316037 5.781752421 0.512592605 0.196901686 0.299768156 8399375.373 498790.2391 190530716.4 0.074219678 3.35E-12 11.47509955 -5.269159816 EVELVS(ph)E ddPTM_HeLa_A485_30min_R1 3 EVELVSE 7 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 EVELVS(1)E;EVELVS(1)E;EVELVS(1)E ;; 103.83 0.0036833 386130000 815729 1229920 1163990 765302 1336650 1243510 1184640 1545950 1136430 1058460 TRUE FALSE FALSE 997185.1018 1373748.445 1594598.339 807108.5104 1203568.433 1308618.261 931531.9864 1166803.339 1364501.077 794605.4015 1.254943775 1.728843578 2.00678014 1.015734991 1.514674366 1.646878134 1.172320229 1.468405999 1.717205892 1 19.59987907 -10.78982448 2.69201894 0.86320988 1.503852905 0.225634139 0.27946998 39963525.82 30512538.15 35930006.21 0.070250395 1.62E-11 10.78982448 0.640643025 EVELVS(ph)E ddPTM_HeLa_A486_30min_R1 3 EVELVSE 7 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 EVELVS(1)E;EVELVS(1)E;EVELVS(1)E ;; 143.01 0.0013971 394818000 916700 980100 842430 318687 1193740 916840 976420 979140 866090 988140 TRUE FALSE FALSE 852444.0638 902433.3065 1168641.457 741919.4415 1044009.998 803729.6025 732109.3885 756211.1965 941163.3785 740703.3123 1.150857637 1.218346525 1.577745688 1.001641857 1.409484716 1.085089791 0.988397617 1.020936702 1.270634764 1 19.49853626 -6.384303624 7.874412932 1.067053095 1.270360816 0.277178562 0.160422503 0.381459568 22.90616721 0.055235944 0.048625882 4.13E-07 6.384303624 0.20330772 EVESRLS(ph)PGESAYQK ddPTM_HeLa_A486_30min_R1 2 EVESRLSPGESAYQK 15 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 EVES(0.123)RLS(0.877)PGESAYQK;EVES(0.341)RLS(0.659)PGESAYQK ; 144.72 1.04E-06 397200000 376220 335739 311495 201490 642930 481260 634420 727380 336656 499370 TRUE FALSE FALSE 349848.9208 309133.8189 432114.2061 469078.9027 562287.7243 421887.0343 475681.4058 561771.4526 365837.6131 374324.5016 0.934614003 0.825844468 1.154383975 1.253134381 1.502139779 1.127062301 1.270772829 1.50076057 0.977327457 1 18.51392996 -4.893789389 3.793273602 1.259431716 0.880313085 0.392528058 0.170113091 0.194137897 5.242578088 0.043646269 0.100679485 1.28E-05 4.893789389 -0.379118631 EVEVKLT(ph)PLILKPFGNSISR ddPTM_HeLa_A486_30min_R1 1 EVEVKLTPLILKPFGNSISR 20 2 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 EVEVKLT(0.995)PLILKPFGNS(0.002)IS(0.002)R 62.605 0.014238 32292000 129030 96125 50015 44458 92020 104580 119470 95334 77578 129890 TRUE FALSE FALSE 119985.6633 88507.70492 69382.14745 103500.4708 80477.99355 91677.98289 89577.34238 73628.52933 84302.5235 97364.69856 1.232332304 0.909032804 0.71260065 1.063018448 0.826562345 0.94159366 0.92001869 0.756213807 0.865842803 1 16.57111117 -4.269091864 5.100458856 0.88016247 1.246954337 0.516402619 0.099912591 0.11659702 9.90304197 0.023933864 0.149298007 5.38E-05 4.269091864 0.366791867 EVFEDAAEIR ddPTM_HeLa_A485_30min_R1 1 EVFEDAAEIR 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 136.63 0.0021318 31654000 49000 62338 64049 52407 76621 66088 71142 82335 59040 69850 FALSE FALSE TRUE 59899.88095 69627.88683 87743.3904 55269.86171 68992.34421 69548.26549 55941.93052 62142.21215 70888.78645 52437.68049 1.142306074 1.327821638 1.673288932 1.054010421 1.315701678 1.326303239 1.066826946 1.185067905 1.351867317 1 15.67831625 -6.267630649 0.918867919 1.167142575 1.338770322 0.125811757 0.17633772 1.285096225 2.321155198 0.109196666 0.099982541 5.40E-07 6.267630649 0.171627747 EVFEDAAEIR ddPTM_HeLa_A486_30min_R1 1 EVFEDAAEIR 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 136.63 0.0016888 33851000 50266 65305 59415 27382 114050 51055 65344 60983 54744 60581 FALSE FALSE TRUE 46742.61297 60129.99396 82422.07919 63746.67981 99744.78553 44756.35319 48994.24006 47098.50215 59489.254 45411.12328 1.029320783 1.324124787 1.815019608 1.403767958 2.196483555 0.985581284 1.078903945 1.037157831 1.310015029 1 15.4707581 EVFGDT(ph)LNESRDPDRPPER ddPTM_HeLa_A485_30min_R1 1 EVFGDTLNESRDPDRPPER 19 2 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 EVFGDT(0.593)LNES(0.407)RDPDRPPER 87.102 0.00071354 386990000 40417 60891 62751 57826 78089 77955 76535 75547 51621 75321 TRUE FALSE FALSE 49407.62221 68011.67277 85965.20619 60984.88796 70314.18497 82036.60326 60182.67202 57018.9798 61980.8612 56544.86088 0.873777412 1.202791407 1.520300958 1.078522204 1.243511504 1.450823328 1.064334956 1.008384828 1.096136063 1 15.78710829 -6.966985409 24.99429865 1.03862803 1.236227791 0.223276802 0.170257197 282.5667328 213921.8088 0.072443922 0.048841356 1.08E-07 6.966985409 0.197599761 EVFGDTLNES(ph)RDPDRPPER ddPTM_HeLa_A486_30min_R1 2 EVFGDTLNESRDPDRPPER 19 2 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 EVFGDT(0.261)LNES(0.739)RDPDRPPER;EVFGDT(0.06)LNES(0.94)RDPDRPPER ; 104.53 3.47E-05 795800000 483330 638120 571860 229738 782680 707040 703580 733210 541730 642400 TRUE FALSE FALSE 449451.0629 587553.0472 793299.5069 534841.6743 684508.9762 619812.5935 527536.8423 566274.0889 588687.5926 481538.8587 0.933364057 1.220157079 1.647425732 1.110692657 1.421503091 1.287149692 1.09552289 1.175967585 1.222513162 1 18.8772927 -6.751446862 24.40467129 1.13816488 1.284575284 0.127685669 0.183739506 334.9434329 818031.8593 0.071413637 0.054610977 1.77E-07 6.751446862 0.146410404 EVFGTFGIPFLLR ddPTM_HeLa_A485_30min_R1 1 EVFGTFGIPFLLR 13 0 A0A669KBL1;Q93009-3;Q93009 A0A669KBL1 USP7 Ubiquitin carboxyl-terminal hydrolase 7 0 0 82.417 0.037679 5399700 2938.6 4017.9 4355 3249.9 4927.9 3052.3 4163.8 4035 3566.2 4470.4 FALSE FALSE TRUE 3592.281432 4487.758454 5966.095727 3427.433808 4437.260973 3212.113708 3274.170115 3045.409923 4281.903629 3356.011552 1.070401987 1.33722974 1.777733966 1.021281886 1.322182866 0.957122364 0.975613482 0.907449178 1.275890611 1 11.71253197 -5.888932871 1.641764394 1.020438745 1.363513765 0.287145561 0.214319008 0.452152248 2.511286223 0.080963741 0.097970197 1.29E-06 5.888932871 0.34307502 EVGVYEALKDDSWLK ddPTM_HeLa_A485_30min_R1 1 EVGVYEALKDDSWLK 15 1 B8ZZ51;B9A041;A0A5K1VW95;P40925-2;P40925;P40925-3 B8ZZ51 MDH1 "Malate dehydrogenase, cytoplasmic" 0 0 80.534 0.014365 0 75730 49626 44113 91749 60174 78773 96444 98555 60555 118180 FALSE FALSE TRUE 92575.87723 55429.32901 60432.2344 96761.01555 54182.86528 82897.43247 75837.95152 74384.23172 72707.83306 88719.90094 1.04346236 0.624767706 0.681157595 1.090634847 0.61071828 0.934372464 0.854802031 0.838416533 0.819521125 1 16.43697013 -14 0.243488757 2.010559158 0.810663459 0.090988484 0.154480779 418.0607441 4.166575532 209.3591871 0.227981543 1.00E-14 14 -1.199895699 EVHDELEDLPS(ph)PPPPLS(ph)PPPT(ph)TSPHKQTEDK ddPTM_HeLa_A485_30min_R1 1 EVHDELEDLPSPPPPLSPPPTTSPHKQTEDK 31 1 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 3 0 EVHDELEDLPS(0.942)PPPPLS(0.812)PPPT(0.403)T(0.39)S(0.377)PHKQT(0.077)EDK 48.716 0.02254 119100000 132410 86871 52886 202440 108240 87498 121300 107930 67324 255550 TRUE FALSE FALSE 161864.1477 97029.80777 72450.73217 213498.7846 97463.24555 92079.25998 95383.26407 81459.99827 80835.30927 191846.088 0.843718782 0.505769019 0.377650297 1.112864937 0.508028319 0.47996423 0.497186391 0.424611203 0.421355004 1 17.54958982 -10.09982941 4.916305369 1.000012222 0.571162322 0.256786796 0.217059169 3.88E-05 7.10E-06 0.212659678 0.051575614 7.95E-11 10.09982941 -0.4288499 EVHDELEDLPSPPPPLS(ph)PPPTTSPHK ddPTM_HeLa_A485_30min_R1 1 EVHDELEDLPSPPPPLSPPPTTSPHK 26 0 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 1 0 EVHDELEDLPSPPPPLS(0.963)PPPT(0.012)T(0.012)S(0.012)PHK 125.59 6.24E-06 374950000 197450 197970 183320 207590 317380 178110 263600 192860 229460 332520 TRUE FALSE FALSE 241372.0713 221120.8694 251137.6966 218930.1161 285780.5328 187435.5642 207279.7066 145560.7826 275510.5173 249628.8836 0.96692365 0.885798415 1.006044224 0.877022374 1.14482158 0.750856878 0.830351455 0.583108735 1.103680445 1 17.92942535 -6.293327361 24.99828892 0.826090801 0.967260965 0.131735179 0.148266725 1149.163023 900872.1315 0.049519642 0.043675348 5.09E-07 6.293327361 0.141170164 EVHDELEDLPSPPPPLS(ph)PPPTTSPHK ddPTM_HeLa_A486_30min_R1 2 EVHDELEDLPSPPPPLSPPPTTSPHK 26 0 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 1 0 EVHDELEDLPSPPPPLS(0.998)PPPT(0.001)T(0.001)S(0.001)PHK;EVHDELEDLPSPPPPLS(0.996)PPPT(0.001)T(0.001)S(0.001)PHK ; 151.41 2.40E-09 909410000 284050 344910 278650 36414 420070 346310 374820 369680 309620 247700 TRUE FALSE FALSE 264139.5618 317578.0755 386550.7425 84773.63226 367380.9036 303585.7932 281036.0716 285511.9341 336458.1109 185674.3077 1.422596185 1.710403983 2.081875232 0.456571689 1.978630797 1.635044702 1.513596981 1.537702968 1.812087601 1 17.50241467 -10.30684191 3.058134833 0.995692038 1.569392847 0.142134058 0.421574025 36288317.24 47509543.31 1431818.412 0.103511247 4.93E-11 10.30684191 0.573700809 EVIEGY(ph)R ddPTM_HeLa_A485_30min_R1 1 EVIEGYR 7 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 EVIEGY(1)R 72.234 0.016206 310080000 234170 301380 345090 255850 371780 307860 359650 410920 318910 367170 TRUE FALSE FALSE 286260.3086 336623.7693 472753.1514 269826.4377 334764.2778 323979.0736 282807.8394 310141.2257 382912.3118 275641.2763 1.038524827 1.221238611 1.715102897 0.978904326 1.214492555 1.175364873 1.025999601 1.125162493 1.389168984 1 18.07243242 EVIEGY(ph)R ddPTM_HeLa_A486_30min_R1 2 EVIEGYR 7 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 EVIEGY(1)R;EVIEGY(1)R ; 62.714 0.02702 702420000 485540 641920 563020 236765 759490 600160 658490 667390 566660 697990 TRUE FALSE FALSE 451506.1533 591051.9214 781036.4222 551200.8854 664227.6822 526118.3612 493728.8372 515439.866 615778.5451 523208.7608 0.862956027 1.129667478 1.492781621 1.053500871 1.269527064 1.00556107 0.943655524 0.985151444 1.176927053 1 18.99702717 -6.284112121 23.91872573 1.016418233 1.172291621 0.157419164 0.160064891 845.2012921 891645.5429 0.057598266 0.05083975 5.20E-07 6.284112121 0.155873388 EVIEIEDAS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 EVIEIEDASPTK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.993)PT(0.007)K;EVIEIEDAS(0.97)PT(0.03)K ; 138.21 8.62E-06 360250000 309980 208436 192338 524240 283830 251880 341960 239560 247280 697160 TRUE FALSE FALSE 378933.9816 232810.777 263491.8301 552877.9038 255570.8886 265068.0473 268897.4524 180807.5344 296906.8278 523370.8423 0.724025779 0.444829475 0.503451489 1.056378879 0.488317017 0.506463154 0.513779964 0.345467343 0.567297228 1 18.99747403 -9.995527374 4.874089165 1.000002044 0.567903481 0.323026296 0.185687946 187091144.7 20.70514023 11530.65928 0.047833061 1.01E-10 9.995527374 -0.432098563 EVIEIEDAS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 EVIEIEDASPTK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.989)PT(0.011)K;EVIEIEDAS(0.999)PT(0.001)K ; 244.71 5.70E-28 373280000 633930 676660 327440 274990 484030 765450 826760 717470 615870 995030 TRUE FALSE FALSE 589494.7806 623038.9972 454233.5371 640190.6172 423318.444 671016.5615 619895.9034 554117.7433 669254.1075 745868.0114 0.790347316 0.83532071 0.60899989 0.858316227 0.567551413 0.89964518 0.831106702 0.742916622 0.897282223 1 19.50856083 -8.207242774 0.593990633 1.005806687 0.749277835 0.352739283 0.101374922 1.246656091 0.960290523 0.109332245 0.04396564 6.21E-09 8.207242774 -0.256528852 EVIEIEDAS(ph)PTKCPITTK ddPTM_HeLa_A485_30min_R1 5 EVIEIEDASPTKCPITTK 18 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.999)PT(0.001)KCPITTK;EVIEIEDAS(0.994)PT(0.006)KCPITTK;EVIEIEDAS(0.852)PT(0.148)KCPITTK;EVIEIEDAS(0.985)PT(0.015)KCPITTK;EVIEIEDAS(0.901)PT(0.099)KCPITTK ;;;; 248.03 4.51E-46 3641770000 1907950 1328330 976078 3115560 2137740 1758160 2939980 2540550 1517310 4149330 TRUE FALSE FALSE 2332366.895 1483666.639 1337169.87 3285755.154 1924899.1 1850214.539 2311829.256 1917476.129 1821820.199 3114978.394 0.748758611 0.47630078 0.429270994 1.05482438 0.617949423 0.593973474 0.742165422 0.61556643 0.584858053 1 21.57079073 -10.65479644 2.933366757 1.033897899 0.650619223 0.287681047 0.164500791 126469621.8 128840220.7 32461202.34 0.042347596 2.21E-11 10.65479644 -0.383278675 EVIEIEDAS(ph)PTKCPITTK ddPTM_HeLa_A486_30min_R1 6 EVIEIEDASPTKCPITTK 18 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.86)PT(0.14)KCPITTK;EVIEIEDAS(0.995)PT(0.005)KCPITTK;EVIEIEDAS(0.993)PT(0.007)KCPITTK;EVIEIEDAS(0.946)PT(0.054)KCPITTK;EVIEIEDAS(0.934)PT(0.066)KCPITTK;EVIEIEDAS(0.991)PT(0.009)KCPITTK ;;;;; 290.54 8.31E-79 7702750000 3651810 3694270 1561082 2169190 3081990 4546050 5878350 5138430 2809540 6420510 TRUE FALSE FALSE 3395836.977 3401522.591 2165574.758 5049983.945 2695418.076 3985204.572 4407524.655 3968521.66 3053073.189 4812772.505 0.705588509 0.706769869 0.449964081 1.049287898 0.56005516 0.828047569 0.915797422 0.824581186 0.634368898 1 22.1984368 -5.250905475 24.99844314 0.815203994 0.629373751 0.272648553 0.155275804 1060.66126 2517094.456 0.040847958 0.069802612 5.61E-06 5.250905475 -0.185830243 EVIEIEDASPT(ph)KCPITTK ddPTM_HeLa_A485_30min_R1 1 EVIEIEDASPTKCPITTK 18 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.437)PT(0.563)KCPITTK 237.6 3.70E-45 2178500000 1362200 907200 741690 2379200 1559900 1213400 2095900 1925000 960650 2883600 TRUE FALSE FALSE 1665216.69 1013289.148 1016071.995 2509169.672 1404590.879 1276931.748 1648093.843 1452890.732 1153443.643 2164771.589 0.769234361 0.468081323 0.469366838 1.159092111 0.648840222 0.589869044 0.76132459 0.671151977 0.53282464 1 21.04578338 -11.05146438 2.627652061 1.442642454 0.675796512 0.207657603 0.190775216 19174157.26 11075282.17 50802046.15 0.048686103 8.88E-12 11.05146438 -0.766845941 EVIGGLCSLANIPLT(ph)PETQR ddPTM_HeLa_A485_30min_R1 2 EVIGGLCSLANIPLTPETQR 20 0 Q01664 Q01664 TFAP4 Transcription factor AP-4 1 0 EVIGGLCSLANIPLT(0.993)PET(0.007)QR;EVIGGLCSLANIPLT(0.974)PET(0.026)QR ; 141.6 1.28E-08 63322000 68011 74471 93847 64472 97460 74504 82734 79859 78245 97327 TRUE FALSE FALSE 83139.81231 83179.73564 128564.9106 67993.94211 87756.5402 78404.91423 65057.20503 60273.45504 93948.05379 73065.17007 1.137885702 1.138432109 1.759592299 0.930593086 1.20107214 1.073081937 0.890399693 0.824927321 1.285811745 1 16.15689622 EVIGGLCSLANIPLT(ph)PETQR ddPTM_HeLa_A486_30min_R1 2 EVIGGLCSLANIPLTPETQR 20 0 Q01664 Q01664 TFAP4 Transcription factor AP-4 1 0 EVIGGLCSLANIPLT(0.995)PET(0.005)QR;EVIGGLCSLANIPLT(0.998)PET(0.002)QR ; 172.84 4.63E-13 63301000 60613 73284 55596 22806 71704 60254 58317 68951 59895 74491 TRUE FALSE FALSE 56364.34171 67476.70894 77124.26011 53093.52055 62710.21571 52820.4741 43725.46979 53252.36249 65086.74683 55837.96874 1.009426793 1.208437743 1.38121536 0.950849785 1.123074802 0.945959806 0.78307773 0.953694479 1.165636005 1 15.76895884 -5.290585711 24.91448271 0.982195173 1.200567786 0.359337755 0.128763578 716.6537969 612599.014 0.037933761 0.056274951 5.12E-06 5.290585711 0.218372613 EVIKS(ph)PTASR ddPTM_HeLa_A485_30min_R1 6 EVIKSPTASR 10 1 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 EVIKS(0.972)PT(0.028)ASR;EVIKS(0.928)PT(0.072)ASR;EVIKS(0.888)PT(0.112)ASR;EVIKS(0.998)PT(0.002)ASR;EVIKS(0.967)PT(0.033)ASR;EVIKS(0.957)PT(0.043)ASR ;;;;; 156.81 7.93E-07 2520300000 1570420 1829670 1715740 1643550 2186870 2024460 2305750 2284990 1737200 2483400 TRUE FALSE FALSE 1919754.511 2043633.99 2350463.624 1733332.975 1969137.544 2130457.595 1813107.676 1724592.62 2085840.105 1864334.084 1.029726661 1.0961737 1.260752375 0.929733029 1.056214957 1.14274454 0.972522947 0.925044838 1.118812408 1 20.83022898 -6.018339926 0.812761232 1.009403944 1.105558662 0.098518172 0.094382108 1.458262945 2.133056242 0.058399518 0.072513271 9.59E-07 6.018339926 0.096154719 EVIKS(ph)PTASR ddPTM_HeLa_A486_30min_R1 4 EVIKSPTASR 10 1 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 EVIKS(0.98)PT(0.02)ASR;EVIKS(0.996)PT(0.004)ASR;EVIKS(0.95)PT(0.05)ASR;EVIKS(0.971)PT(0.029)ASR ;;; 133.98 2.73E-05 2446800000 1873090 1949820 1507450 689120 2106580 1804390 2006710 2024000 1471520 2060640 TRUE FALSE FALSE 1741796.064 1795309.162 2091175.011 1604306.186 1842353.093 1581782.707 1504609.933 1563179.384 1599072.538 1544642.331 1.127637142 1.162281472 1.353824745 1.038626324 1.192737669 1.024044645 0.974083063 1.01200087 1.035238065 1 20.55884138 -6.20036088 1.649624769 1.001651729 1.18853001 0.533773633 0.076146563 0.294713564 1.593219698 0.031869785 0.030353356 6.30E-07 6.20036088 0.186878281 EVLAGRPLFPHVLCHNCAVEFNFGQK ddPTM_HeLa_A485_30min_R1 2 EVLAGRPLFPHVLCHNCAVEFNFGQK 26 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 105.03 1.01E-07 174206000 129709 134638 107142 127156 154427 167880 199773 233860 110421 194594 FALSE FALSE TRUE 158562.3196 150382.7429 146778.2844 134102.2103 139051.7057 176669.9372 157089.8666 176505.4683 132581.4819 146085.297 1.08540916 1.029417374 1.004743717 0.917971986 0.951852845 1.209361522 1.075329754 1.208235681 0.90756212 1 17.15645146 -6.22771789 24.99695592 1.092814616 0.99557324 0.15530085 0.093475893 1031.171101 764383.5186 0.030265094 0.030263945 5.92E-07 6.22771789 -0.097241376 EVLAGRPLFPHVLCHNCAVEFNFGQK ddPTM_HeLa_A486_30min_R1 2 EVLAGRPLFPHVLCHNCAVEFNFGQK 26 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 130.65 4.28E-12 152462000 94909 107771 85247 45896 132951 114876 136199 133501 109006 148443 FALSE FALSE TRUE 88256.36921 99230.83346 118256.9214 106848.2075 116275.0459 100703.7671 102120.5696 103105.7366 118454.7278 111271.9066 0.793159495 0.891786943 1.062774289 0.960244241 1.044963184 0.90502419 0.917756986 0.926610676 1.064551974 1 16.76372987 -4.513689176 4.905588101 0.978948108 0.811004197 0.534147743 0.056536356 0.137236448 9.27603929 0.014687668 0.051396972 3.06E-05 4.513689176 -0.16794391 EVLAS(ph)PDRLWGSR ddPTM_HeLa_A485_30min_R1 5 EVLASPDRLWGSR 13 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(0.997)PDRLWGS(0.003)R;EVLAS(1)PDRLWGSR ;;;; 197.29 1.12E-21 849460000 389865 453124 460172 467775 581120 444527 533277 532306 423571 576180 TRUE FALSE FALSE 476589.1242 506112.9101 630408.7722 493328.3638 523261.6524 467801.7464 419338.0125 401757.1189 508577.8145 432548.9298 1.10181552 1.170070887 1.457427654 1.140514586 1.209716673 1.081500182 0.969457982 0.928813115 1.175769443 1 18.72250381 -6.341750124 2.477545996 1.012522268 1.227057209 0.431244929 0.107517143 0.282277103 3.396997479 0.043095883 0.037806777 4.55E-07 6.341750124 0.214534942 EVLAS(ph)PDRLWGSR ddPTM_HeLa_A486_30min_R1 4 EVLASPDRLWGSR 13 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR;EVLAS(1)PDRLWGSR ;;; 142.4 5.36E-08 788888000 288045 319791 291845 120614 375039 308901 351066 328279 266036 329949 TRUE FALSE FALSE 267854.533 294449.5965 404855.1999 280795.4875 327998.1115 270791.9353 263225.5736 253537.038 289096.2147 247327.6228 1.082994814 1.190524508 1.636918656 1.135317941 1.326168536 1.094871378 1.064278913 1.025106032 1.168879608 1 17.91606385 -6.328046777 5.369525884 1.069227402 1.282049567 0.326005995 0.146457617 0.273744318 15.47725533 0.05304358 0.046881308 4.70E-07 6.328046777 0.212822165 EVLDEDT(ph)DEEKETLK ddPTM_HeLa_A485_30min_R1 4 EVLDEDTDEEKETLK 15 1 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK ;;; 267.39 8.53E-51 4599600000 1984195 1153111 695180 4244890 1833101 1632711 3207400 2509539 1214834 5655670 TRUE FALSE FALSE 2425572.332 1287957.301 952356.0109 4476777.592 1650591.028 1718197.223 2522112.788 1894070.625 1458640.041 4245815.554 0.571285375 0.303347445 0.224304612 1.054397567 0.38875712 0.404680138 0.594023164 0.446102899 0.34354767 1 22.01761027 -11.04790598 2.597240103 1.689308502 0.482557381 0.334663824 0.219459601 34804697.03 11115927.66 142628261.5 0.054180609 8.96E-12 11.04790598 -1.20675112 EVLDEDT(ph)DEEKETLK ddPTM_HeLa_A486_30min_R1 4 EVLDEDTDEEKETLK 15 1 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK ;;; 247.4 1.75E-41 6945900000 2320970 2009700 681181 2194060 1807610 2874600 4346680 3784520 1390880 5379900 TRUE FALSE FALSE 2158281.989 1850444.053 944952.5259 5107882.562 1580882.699 2519961.079 3259094.69 2922867.411 1511442.598 4032738.023 0.53519023 0.458855508 0.234320335 1.266604112 0.392012248 0.624875969 0.808159288 0.724784847 0.374793153 1 21.94332826 -14 0.111088239 2.065324635 0.419182608 0.143153612 0.277404105 349.0877852 2.567179239 87.80622627 3.386556104 1.00E-14 14 -1.646142027 EVLDEDT(ph)DEEKETLKNQLR ddPTM_HeLa_A485_30min_R1 1 EVLDEDTDEEKETLKNQLR 19 2 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 EVLDEDT(1)DEEKETLKNQLR 101.29 0.00019166 106210000 61549 95713 36297 60554 103670 145930 254530 461190 62644 109380 TRUE FALSE FALSE 75240.36271 106905.8028 49724.77074 63861.91169 93348.25079 153570.6691 200147.5862 348082.4294 75216.0762 82113.57899 0.916296228 1.301925992 0.605560875 0.777726565 1.136818684 1.870222575 2.437448089 4.239036146 0.916000461 1 16.3253332 -6.368942728 2.4898285 2.402010234 0.915653651 0.283088693 0.885557127 0.318310787 3.858798629 0.340620383 0.293803322 4.28E-07 6.368942728 -1.486356583 EVLPAS(ph)PRPDQSRPTGVPTPTSVLSCPSYEEVMHTPR ddPTM_HeLa_A485_30min_R1 1 EVLPASPRPDQSRPTGVPTPTSVLSCPSYEEVMHTPR 37 2 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 EVLPAS(1)PRPDQSRPTGVPTPTSVLSCPSYEEVMHTPR 125.9 1.09E-06 265430000 12319 19962 20391 13229 20934 22414 15919 20717 17156 26748 TRUE FALSE FALSE 15059.31905 22296.38225 27934.47944 13951.66677 18849.73746 23587.56238 12517.7756 15636.12327 20599.05184 20080.21586 0.749958026 1.110365666 1.39114438 0.694796653 0.938721854 1.174666774 0.623388498 0.778683027 1.025838167 1 14.29348716 -5.283933889 24.97750427 0.884322733 1.086477119 0.149639704 0.210350024 1436.781222 1595372.792 0.060413594 0.089681913 5.20E-06 5.283933889 0.202154386 EVLSDPEMRKK ddPTM_HeLa_A486_30min_R1 1 EVLSDPEMRKK 11 2 X6R9L0;Q13217 X6R9L0 DNAJC3 DnaJ homolog subfamily C member 3 0 0 60.91 0.029839 25357000 33727 78988 47879 27363 76264 87233 83208 79249 71882 58402 FALSE FALSE TRUE 31362.91147 72728.70321 66419.03104 63702.44685 66698.25799 76471.07938 62388.47832 61205.73269 78112.78964 43777.75907 0.716411989 1.661316266 1.517186637 1.455132657 1.52356492 1.746802052 1.425118134 1.398101091 1.784303064 1 15.41791049 -4.255105354 24.6246907 1.518765003 0.716411544 0.556664826 0.209607616 400.7412502 1557902.962 0.047861315 0.434721609 5.56E-05 4.255105354 -0.802353459 EVLSMHQILLYLLR ddPTM_HeLa_A485_30min_R1 1 EVLSMHQILLYLLR 14 0 Q9NRR4;Q9NRR4-3;Q9NRR4-4;Q9NRR4-2 Q9NRR4 DROSHA Ribonuclease 3 0 0 107.14 0.00077798 2890600 3314.6 3885.4 4049.7 2272.3 4131 1787 3559.7 2126.8 2733.9 4458.4 FALSE FALSE TRUE 4051.921335 4339.763732 5547.852552 2396.429995 3719.703135 1880.564557 2799.141015 1605.198965 3282.568653 3347.002931 1.210611828 1.296611871 1.657558319 0.715992799 1.111353414 0.561865226 0.836312687 0.479592937 0.980748664 1 11.7086541 -5.2738858 24.95065809 0.793613372 1.379095796 0.605874422 0.21247822 455.4726271 913060.0366 0.058239868 0.087073802 5.32E-06 5.2738858 0.585482424 EVLSMHQILLYLLR ddPTM_HeLa_A486_30min_R1 1 EVLSMHQILLYLLR 14 0 Q9NRR4;Q9NRR4-3;Q9NRR4-4;Q9NRR4-2 Q9NRR4 DROSHA Ribonuclease 3 0 0 87.18 0.0052571 1516300 2271.3 3512 2398.4 1551.4 3586.6 2160.9 3357.3 2291.5 2040.2 3567.7 FALSE FALSE TRUE 2112.093599 3233.69633 3327.124711 3611.737603 3136.735184 1894.310128 2517.26803 1769.775473 2217.046179 2674.324698 0.789767077 1.209163693 1.244099011 1.35052322 1.172907383 0.708332137 0.941272401 0.66176537 0.829011593 1 11.38495892 -6.250635491 24.30573897 0.814011395 1.172398205 0.492110151 0.164312865 398.5738585 896680.2028 0.054704704 0.054154245 5.62E-07 6.250635491 0.35838681 EVLYDS(ph)EGLS(ph)GEER ddPTM_HeLa_A485_30min_R1 4 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 EVLY(0.049)DS(0.951)EGLS(1)GEER;EVLY(0.004)DS(0.996)EGLS(1)GEER;EVLYDS(1)EGLS(1)GEER;EVLYDS(1)EGLS(1)GEER ;;; 166.56 1.16E-11 3413430000 1136980 1364450 1398330 1316690 1623230 1212240 1428840 1334320 1337770 1603080 TRUE FALSE FALSE 1389897.278 1524010.558 1915630.456 1388617.441 1461615.522 1275711.012 1123556.661 1007075.928 1606248.168 1203461.659 1.154916128 1.266355723 1.591766919 1.153852664 1.214509421 1.060034612 0.933604036 0.836815964 1.33468994 1 20.19875875 -6.011194577 1.716408622 1.013181427 1.320283885 0.366808206 0.163521993 0.375236147 2.236709386 0.063715562 0.06983295 9.75E-07 6.011194577 0.307102458 EVLYDS(ph)EGLS(ph)GEER ddPTM_HeLa_A486_30min_R1 2 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 EVLY(0.001)DS(0.999)EGLS(1)GEER;EVLYDS(1)EGLS(1)GEER ; 190.46 2.11E-17 2286870000 568040 600430 515830 227920 631350 558660 605970 612490 538370 580900 TRUE FALSE FALSE 528223.3294 552849.7401 715573.1904 530609.2784 552160.1959 489738.2092 454349.8967 473039.3976 585036.3451 435438.859 1.21308266 1.269638041 1.643337924 1.218562072 1.26805448 1.124700286 1.043429835 1.086350903 1.343555663 1 18.73211064 -5.92497102 1.927886609 1.121620371 1.361124395 0.353281626 0.140632632 0.382061859 2.895427619 0.051940221 0.060205525 1.19E-06 5.92497102 0.239504023 EVLYDS(ph)EGLSGEER ddPTM_HeLa_A485_30min_R1 1 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 EVLYDS(1)EGLSGEER 157.74 3.72E-07 0 62552 67856 68429 56595 95540 65868 60867 66291 60269 82999 TRUE FALSE FALSE 76466.4766 75791.16893 93743.73467 59686.64154 86027.70214 69316.74663 47862.26821 50033.02831 72364.43548 62308.87678 1.227216418 1.216378353 1.504500474 0.957915543 1.380665269 1.112469847 0.768145258 0.802983955 1.161382442 1 15.92715009 -6.545259644 6.630604152 0.918257398 1.252005892 0.462237765 0.164441895 0.143509267 23.72289686 0.060937354 0.047910489 2.85E-07 6.545259644 0.333748494 EVLYDS(ph)EGLSGEER ddPTM_HeLa_A486_30min_R1 1 EVLYDSEGLSGEER 14 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 EVLYDS(1)EGLSGEER 149.59 6.12E-08 139700000 79985 100410 68989 34567 75895 83377 88392 97624 68292 88336 TRUE FALSE FALSE 74378.46454 92453.14591 95703.38839 80473.72292 66375.54141 73090.79346 66275.38668 75397.14632 74211.60555 66216.09063 1.123268738 1.396233831 1.445319219 1.215319753 1.002408037 1.10382224 1.000895493 1.138652941 1.120748822 1 16.01489422 -5.552046276 5.087754844 1.06862266 1.330264033 0.625210027 0.091265235 0.117090395 7.898993285 0.027094174 0.036283072 2.81E-06 5.552046276 0.261641374 EVMESAVGNSSGSGQNEES(ph)PR ddPTM_HeLa_A485_30min_R1 2 EVMESAVGNSSGSGQNEESPR 21 0 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 EVMESAVGNSSGSGQNEES(1)PR;EVMESAVGNSSGSGQNEES(1)PR ; 407.2 3.48E-175 890590000 282330 402930 414360 306330 436400 370780 433390 417910 371660 373030 TRUE FALSE FALSE 345133.3345 450049.1585 567649.007 323064.0322 392950.4837 390193.4675 340792.686 315416.9172 446248.7529 280040.4861 1.232440849 1.607086049 2.027024788 1.153633308 1.403191693 1.39334663 1.216940774 1.126326131 1.593515135 1 18.09527589 -5.301648493 24.99232633 1.283361078 1.620674876 0.31501167 0.237671411 614.3578296 381858.125 0.066246815 0.098261183 4.99E-06 5.301648493 0.337313797 EVMESAVGNSSGSGQNEES(ph)PR ddPTM_HeLa_A486_30min_R1 2 EVMESAVGNSSGSGQNEESPR 21 0 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 EVMESAVGNSSGSGQNEES(1)PR;EVMESAVGNSSGSGQNEES(1)PR ; 437.19 7.14E-196 811200000 243933 266553 256831 76162 313422 255906 284917 321381 265082 275576 TRUE FALSE FALSE 226834.5564 245430.3695 356282.8414 177308.985 274109.6902 224334.9196 213627.7531 248209.562 288059.5212 206569.9759 1.098100319 1.188122177 1.724756174 0.858348287 1.326958039 1.085999641 1.03416652 1.201576177 1.394488816 1 17.65627105 -5.289293966 24.99556159 1.139721422 1.322106204 0.166939889 0.211368939 1426.560195 1280133.568 0.058959756 0.087472354 5.14E-06 5.289293966 0.182384782 EVNS(ph)QEEEEEELLRK ddPTM_HeLa_A486_30min_R1 1 EVNSQEEEEEELLRK 15 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3;Q96RL1-5 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVNS(1)QEEEEEELLRK 59.975 0.017064 160580000 45946 84427 191860 16932 124130 44944 63466 63448 82388 48140 TRUE FALSE FALSE 42725.42267 77736.69704 266153.3302 39418.5517 108560.4579 39399.26624 47586.13553 49002.27546 89529.45818 36085.43066 1.184007559 2.154240524 7.37564511 1.092367501 3.008429051 1.091833062 1.318707707 1.357951798 2.481041698 1 15.13912885 EVPSKEEPS(ph)PVK ddPTM_HeLa_A485_30min_R1 4 EVPSKEEPSPVK 12 1 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EVPS(0.002)KEEPS(0.998)PVK;EVPSKEEPS(1)PVK;EVPS(0.009)KEEPS(0.991)PVK;EVPSKEEPS(1)PVK ;;; 109.83 0.00021163 3971240000 6777700 5543250 3480520 9125700 5347820 6180400 9290900 7679000 4639120 10780600 TRUE FALSE FALSE 8285375.982 6191484.868 4768109.185 9624213.884 4815372.263 6503996.187 7305823.315 5795713.21 5570148.831 8093194.822 1.023746019 0.765023579 0.589150427 1.189173632 0.594990281 0.803637665 0.902711905 0.716121796 0.688250926 1 22.94827789 EVPSKEEPS(ph)PVK ddPTM_HeLa_A486_30min_R1 4 EVPSKEEPSPVK 12 1 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EVPS(0.002)KEEPS(0.998)PVK;EVPSKEEPS(1)PVK;EVPSKEEPS(1)PVK;EVPSKEEPS(1)PVK ;;; 115.82 0.00012558 4361930000 7522900 6669900 2613920 3168960 4376340 7238100 8935500 7428300 5031670 11399100 TRUE FALSE FALSE 6995583.558 6141352.833 3626099.827 7377499.03 3827418.629 6345136.814 6699743.39 5737038.249 5467819.207 8544691.164 0.818705255 0.718733154 0.42436874 0.863401484 0.447929428 0.742582346 0.784082568 0.671415519 0.639908348 1 23.02659692 -10.56509944 2.91484487 1.017484084 0.676055698 0.327697324 0.137869644 51213546.99 55884892.8 6990176.058 0.033064201 2.72E-11 10.56509944 -0.341428386 EVPSKEEPS(ph)PVKAEVAEK ddPTM_HeLa_A485_30min_R1 5 EVPSKEEPSPVKAEVAEK 18 2 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EVPS(0.001)KEEPS(0.999)PVKAEVAEK;EVPSKEEPS(1)PVKAEVAEK;EVPSKEEPS(1)PVKAEVAEK;EVPSKEEPS(1)PVKAEVAEK;EVPS(0.009)KEEPS(0.991)PVKAEVAEK ;;;; 192.3 2.09E-18 29503000000 7227350 3698730 2354729 16175380 8229240 7135550 15619270 14917010 5145400 21958950 TRUE FALSE FALSE 8835049.073 4131264.299 3225841.246 17059000.05 7409907.971 7509156.364 12282085.37 11258589.91 6178034.584 16484987.89 0.535945136 0.250607664 0.195683568 1.034820296 0.449494293 0.455514824 0.745046672 0.682960156 0.374767311 1 23.97464949 -14 0.085807485 2.402632201 0.139091784 0.275103158 0.233684296 315.5767137 1.893343144 83.79455879 6.609233154 1.00E-14 14 -2.263540417 EVPSKEEPS(ph)PVKAEVAEK ddPTM_HeLa_A486_30min_R1 5 EVPSKEEPSPVKAEVAEK 18 2 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EVPSKEEPS(1)PVKAEVAEK;EVPSKEEPS(1)PVKAEVAEK;EVPS(0.005)KEEPS(0.995)PVKAEVAEK;EVPS(0.028)KEEPS(0.972)PVKAEVAEK;EVPS(0.002)KEEPS(0.998)PVKAEVAEK ;;;; 203.25 2.03E-25 23343960000 3181970 2522398 799766 2817012 2296271 3863740 6407430 5565830 1881905 6118980 TRUE FALSE FALSE 2958930.335 2322513.996 1109456.814 6558146.3 2008251.279 3387071.042 4804223.243 4298612.01 2045030.041 4586747.58 0.645104245 0.506353131 0.24188312 1.429803185 0.437837759 0.738447229 1.047413916 0.937180853 0.445856242 1 22.12904008 -5.196801157 24.99999842 0.844613423 0.468637662 0.283167253 0.289139481 280.7666304 108590.6291 0.076288042 0.132134768 6.36E-06 5.196801157 -0.375975762 EVPVY(ph)IGEDS(ph)T(ph)IARESY(ph)R ddPTM_HeLa_A486_30min_R1 1 EVPVYIGEDSTIARESYR 18 1 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 4 0 EVPVY(0.81)IGEDS(0.81)T(0.823)IARES(0.745)Y(0.81)R 45.696 0.024575 543220000 76259 49778 44282 24333 68603 48352 59454 65327 55110 71399 TRUE FALSE FALSE 70913.6379 45833.40999 61429.17631 56648.45372 59998.17204 42386.82185 44577.98036 50453.46818 59886.97917 53520.22567 1.324987647 0.856375499 1.147774987 1.058449456 1.121037352 0.791977637 0.832918393 0.942699093 1.118959766 1 15.70779658 -6.235140284 24.82211425 0.927205113 1.088248612 0.263628572 0.135942073 989.9067941 934313.0831 0.04411707 0.044104351 5.82E-07 6.235140284 0.161043499 EVPWS(ph)PSAEK ddPTM_HeLa_A485_30min_R1 3 EVPWSPSAEK 10 0 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 EVPWS(0.981)PS(0.019)AEK;EVPWS(0.994)PS(0.006)AEK;EVPWS(0.955)PS(0.045)AEK ;; 185.3 1.13E-09 1117966000 1727318 1581529 1286745 2060437 2089605 1660011 2256195 2113127 1422458 2528450 TRUE FALSE FALSE 2111553.93 1766475.059 1762765.521 2172993.456 1881556.589 1746926.609 1774140.507 1594879.29 1707932.273 1898153.948 1.112425013 0.930627919 0.928673632 1.144793055 0.991256052 0.920329255 0.934666289 0.840226522 0.899785961 1 20.85616557 -6.223289354 3.85376389 0.908844704 1.020085351 0.326526066 0.073828537 0.280203004 9.02147572 0.026195524 0.02526607 5.98E-07 6.223289354 0.111240647 EVPWS(ph)PSAEK ddPTM_HeLa_A486_30min_R1 4 EVPWSPSAEK 10 0 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 EVPWS(0.993)PS(0.007)AEK;EVPWS(0.999)PS(0.001)AEK;EVPWS(0.968)PS(0.032)AEK;EVPWS(0.882)PS(0.118)AEK ;;; 203.61 7.42E-14 3000110000 4170990 4550070 2663890 1707090 4220010 4287310 5229820 4998510 3423110 5214210 TRUE FALSE FALSE 3878625.14 4189505.882 3695419.549 3974191.792 3690696.996 3758385.282 3921263.721 3860458.39 3719827.931 3908537.877 0.992346822 1.071885706 0.945473644 1.016797564 0.944265378 0.961583436 1.003255909 0.987698856 0.951718532 1 21.89819759 -4.766871482 24.99254592 0.976642184 1.032116264 0.355508613 0.030032479 120.9682797 556573.2031 0.007386404 0.016124843 1.71E-05 4.766871482 0.05547408 EVPWSPSAEKAS(ph)PQENGPAVHK ddPTM_HeLa_A485_30min_R1 2 EVPWSPSAEKASPQENGPAVHK 22 1 Q5JSZ5;Q5JT00;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 EVPWS(0.002)PS(0.007)AEKAS(0.991)PQENGPAVHK;EVPWS(0.019)PS(0.022)AEKAS(0.959)PQENGPAVHK ; 113.5 6.27E-05 180989000 160424 161420 117440 222205 199328 208252 275852 321735 162542 309260 TRUE FALSE FALSE 196109.7653 180296.6648 160885.9431 234343.4965 179482.2044 219155.7527 216913.9667 242828.9868 195162.6885 232167.1735 0.844692048 0.776581211 0.692974552 1.009373948 0.773073134 0.943956673 0.93430076 1.045923001 0.84061276 1 17.82480448 -5.893749292 0.816275337 0.964187294 0.780874795 0.348055464 0.090358088 0.710387524 1.043542671 0.050227336 0.072109273 1.28E-06 5.893749292 -0.183312499 EVQAEQPSSSS(ph)PR ddPTM_HeLa_A485_30min_R1 6 EVQAEQPSSSSPR 13 0 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSS(0.012)S(0.988)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSS(0.001)S(0.036)S(0.963)PR ;;;;; 314.56 2.01E-68 12297640000 4818150 6727810 6388960 4699910 7081810 5787180 6446970 6998670 5637470 6246500 TRUE FALSE FALSE 5889930.845 7514568.855 8752502.171 4956654.182 6376720.131 6090187.796 5069522.193 5282235.209 6768858.519 4689362.508 1.25601952 1.602471304 1.866458853 1.056999576 1.359826654 1.298724035 1.081068521 1.126429275 1.443449618 1 22.16096038 -5.275111427 24.99866755 1.206897562 1.577732054 0.454160904 0.190482186 697.5905994 1275508.549 0.053460097 0.079767208 5.31E-06 5.275111427 0.370834492 EVQAEQPSSSS(ph)PR ddPTM_HeLa_A486_30min_R1 6 EVQAEQPSSSSPR 13 0 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 EVQAEQPSSS(0.146)S(0.853)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR;EVQAEQPSSSS(1)PR ;;;;; 303.41 4.68E-58 13140430000 6206770 6989580 5947990 2048903 7359000 5620790 6383170 6775110 5751660 6239440 TRUE FALSE FALSE 5771707.475 6435700.225 8251211.021 4769949.73 6435965.6 4927354.078 4786033.352 5232565.353 6250218.52 4677043.612 1.234050386 1.376018861 1.764193731 1.019864283 1.376075601 1.053518951 1.023303127 1.118776258 1.336360966 1 22.15716545 -5.287020056 24.99761716 1.139807141 1.449880892 0.424697474 0.173401479 729.4701599 712841.6309 0.048867698 0.072511667 5.16E-06 5.287020056 0.310073751 EVQDKDYPLT(ph)PPPS(ph)PTVDEPK ddPTM_HeLa_A485_30min_R1 2 EVQDKDYPLTPPPSPTVDEPK 21 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 2 0 EVQDKDYPLT(1)PPPS(0.906)PT(0.094)VDEPK;EVQDKDYPLT(1)PPPS(0.5)PT(0.5)VDEPK ; 120.57 1.51E-05 590440000 379030 252770 196167 704340 468810 425950 682770 585950 333950 959470 TRUE FALSE FALSE 463343.9159 282329.2527 268737.3365 742816.3107 422133.6303 448252.0834 536890.6118 442244.8438 400970.7018 720291.7867 0.643272524 0.391965115 0.3730951 1.031271388 0.586059203 0.622320137 0.745379333 0.613980128 0.556678154 1 19.45822193 -14 0.181079112 2.493349483 0.54524069 0.296013302 0.17493912 182.7312811 1.76198696 98.99394932 0.561072185 1.00E-14 14 -1.948108793 EVQTPQYLNPFDEPEAFVTIKDSPPQS(ph)TK ddPTM_HeLa_A485_30min_R1 1 EVQTPQYLNPFDEPEAFVTIKDSPPQSTK 29 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1;B5MC86 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 EVQTPQYLNPFDEPEAFVT(0.001)IKDS(0.056)PPQS(0.471)T(0.471)K 146.57 1.84E-09 44120000 50476 35798 22598 61708 48182 45151 65614 67760 32591 90828 TRUE FALSE FALSE 61704.21206 39984.2647 30957.94058 65078.95179 43384.8309 47515.03654 51595.03288 51141.75376 39131.71476 68186.25117 0.904936274 0.586397756 0.454020276 0.954429239 0.636269485 0.696841896 0.756677952 0.75003029 0.573894503 1 16.05719325 -10.56244324 5.885829123 1.000799454 0.699269409 0.280229671 0.143477769 0.001467328 0.000109082 0.135428535 0.032763019 2.74E-11 10.56244324 -0.301530045 EVRS(ph)PTKAPHLQLIEGK ddPTM_HeLa_A485_30min_R1 2 EVRSPTKAPHLQLIEGK 17 2 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVRS(0.996)PT(0.004)KAPHLQLIEGK;EVRS(0.998)PT(0.002)KAPHLQLIEGK ; 251.12 1.16E-43 1324810000 530200 633810 418850 711460 1135570 1136620 1579270 2511400 630110 1343060 TRUE FALSE FALSE 648141.1608 707928.5661 573800.0448 750325.2583 1022508.664 1196131.666 1241846.063 1895475.212 756567.2973 1008259.859 0.642831463 0.702129079 0.569099364 0.744178449 1.014132075 1.186332724 1.231672621 1.879947114 0.750369352 1 19.94343608 -5.942299896 1.699714065 1.277654631 0.639091404 0.47073392 0.27072924 0.288502246 1.703943702 0.099350474 0.114833581 1.14E-06 5.942299896 -0.638563227 EVRS(ph)PTKAPHLQLIEGK ddPTM_HeLa_A486_30min_R1 1 EVRSPTKAPHLQLIEGK 17 2 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVRS(0.982)PT(0.018)KAPHLQLIEGK 209.75 8.44E-26 486370000 477390 394470 287680 395860 861760 568600 952660 1061800 342320 759870 TRUE FALSE FALSE 443927.4262 363210.7606 399077.4003 921582.0857 753670.0252 498451.9131 714294.3918 820051.3189 371992.5732 569593.6061 0.779375719 0.637666499 0.700635323 1.617964239 1.323171498 0.875100963 1.254042152 1.439712999 0.65308418 1 19.11957343 -5.181183996 16.17123141 1.182547571 0.698956117 0.387825459 0.264388546 4.012194404 806.8717855 0.071104527 0.12316341 6.59E-06 5.181183996 -0.483591454 EVRS(ph)PTKAPHLQLIEGKK ddPTM_HeLa_A485_30min_R1 1 EVRSPTKAPHLQLIEGKK 18 3 O43491;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVRS(0.996)PT(0.004)KAPHLQLIEGKK 128.12 9.84E-06 168640000 53590 83162 35455 55617 121490 146530 218530 439020 69792 115210 TRUE FALSE FALSE 65510.91062 92887.07249 48571.27991 58655.21588 109394.029 154202.0842 171839.2803 331349.6566 83798.61423 86490.26728 0.757436792 1.073959827 0.561580874 0.678171287 1.264813169 1.782883659 1.986804824 3.831062928 0.968879122 1 16.40025018 -6.227229831 1.945823407 2.160189072 0.778808578 0.321719591 0.759632973 0.344751883 2.5675367 0.295604015 0.27753194 5.93E-07 6.227229831 -1.381380494 EVS(ph)DDEAEEKEDKEEEKEK ddPTM_HeLa_A485_30min_R1 1 EVSDDEAEEKEDKEEEKEK 19 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EVS(1)DDEAEEKEDKEEEKEK 73.831 0.025727 1205800000 313080 124080 34906 928820 107280 92994 299860 159910 44897 722420 TRUE FALSE FALSE 382723.5659 138590.0766 47819.18196 979559.0847 96598.82652 97863.02204 235792.4614 120691.8218 53907.41608 542333.9892 0.705697178 0.255543778 0.088172939 1.80619158 0.178116859 0.180447886 0.434773527 0.222541504 0.099398926 1 19.04882206 EVS(ph)DDEAEEKEDKEEEKEK ddPTM_HeLa_A486_30min_R1 3 EVSDDEAEEKEDKEEEKEK 19 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EVS(1)DDEAEEKEDKEEEKEK;EVS(1)DDEAEEKEDKEEEKEK;EVS(1)DDEAEEKEDKEEEKEK ;; 208.65 7.50E-26 3573270000 1207830 755230 113449 1439970 156365 1268730 1760520 1060750 419370 6693300 TRUE FALSE FALSE 1123167.354 695382.8243 157379.4911 3352322.932 136752.2437 1112206.992 1320019.275 819240.381 455721.3293 5017254.114 0.223860966 0.138598287 0.031367654 0.668158888 0.027256392 0.221676432 0.263095957 0.16328461 0.090830825 1 22.25846658 -10.81533911 3.167625258 1.206516242 0.205818478 0.656132013 0.173055981 73858401.18 66209700 116776601.2 0.042497698 1.53E-11 10.81533911 -1.000697763 EVS(ph)DS(ph)EAGGGPQGER ddPTM_HeLa_A485_30min_R1 1 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 EVS(1)DS(1)EAGGGPQGER 193.42 4.45E-18 104800000 500470 565200 377430 372700 378900 418850 443020 411080 339100 434300 TRUE FALSE FALSE 611797.8249 631295.2234 517057.0632 393059.6573 341175.3856 440780.3383 348365.1579 310261.9855 407154.2596 326037.0027 1.876467456 1.936268639 1.585884605 1.205567632 1.046431487 1.351933476 1.0684835 0.951615868 1.248797702 1 18.31467618 -5.095677141 2.093786023 1.116335394 1.918505938 0.888948193 0.113254979 0.09698678 0.828177792 0.033526578 0.077739964 8.02E-06 5.095677141 0.802170544 EVS(ph)DS(ph)EAGGGPQGER ddPTM_HeLa_A486_30min_R1 2 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 EVS(1)DS(1)EAGGGPQGER;EVS(1)DS(1)EAGGGPQGER ; 132.61 3.10E-05 473240000 608080 664320 421700 156388 423900 530890 503790 464030 528780 664290 TRUE FALSE FALSE 565456.7321 611676.8638 584993.5335 364079.1674 370730.5093 465394.1895 377736.4135 358380.4987 574615.0762 497947.4602 1.13557509 1.228396393 1.174809755 0.731159804 0.744517321 0.934625089 0.758586886 0.719715487 1.15396728 1 18.925634 -5.247654317 24.08649789 0.845215021 1.184474092 0.538540143 0.133453132 344.6420841 602187.4179 0.035402725 0.060871372 5.65E-06 5.247654317 0.339259071 EVS(ph)DSEAGGGPQGER ddPTM_HeLa_A485_30min_R1 4 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.813)DS(0.187)EAGGGPQGER;EVS(0.994)DS(0.006)EAGGGPQGER;EVS(0.936)DS(0.064)EAGGGPQGER;EVS(0.939)DS(0.061)EAGGGPQGER ;;; 186.08 6.59E-18 5254140000 2297070 2826560 2064960 2103900 1850610 2074020 1999230 1911920 1775270 2415240 TRUE FALSE FALSE 2808045.297 3157101.604 2828874.634 2218830.73 1666356.771 2182612.48 1572078.178 1443018.622 2131550.405 1813165.117 1.548698058 1.741210204 1.560185891 1.223733409 0.919032004 1.203758256 0.867035309 0.795856157 1.175596412 1 20.79007888 -5.37678243 2.288214409 0.986270872 1.650302431 0.827160214 0.127356529 0.115534241 1.182065294 0.03895122 0.066275195 4.20E-06 5.37678243 0.664031559 EVS(ph)DSEAGGGPQGER ddPTM_HeLa_A486_30min_R1 2 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.847)DS(0.153)EAGGGPQGER;EVS(0.7)DS(0.3)EAGGGPQGER ; 359.55 1.35E-104 2945190000 1347010 1216960 692700 281470 788220 930710 953830 813080 1031440 1329430 TRUE FALSE FALSE 1252591.555 1120523.658 960931.9911 655276.3847 689354.0977 815888.463 715171.6454 627959.4334 1120846.05 996532.0749 1.256950565 1.124423073 0.964276028 0.657556742 0.691753046 0.81872775 0.717660438 0.630144728 1.124746587 1 19.92655672 -4.84075821 2.401083386 0.783243953 1.223290322 0.508338234 0.149933042 0.216094965 2.461482626 0.040301776 0.120140864 1.44E-05 4.84075821 0.440046369 EVS(ph)DSEAGGGPQGERK ddPTM_HeLa_A485_30min_R1 4 EVSDSEAGGGPQGERK 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.999)DS(0.001)EAGGGPQGERK;EVS(1)DSEAGGGPQGERK;EVS(1)DSEAGGGPQGERK;EVS(0.99)DS(0.01)EAGGGPQGERK ;;; 192.6 1.95E-18 2761890000 1097952 1732609 920920 967425 1111160 1459090 1554960 1874590 972780 1190150 TRUE FALSE FALSE 1342187.635 1935222.551 1261606.631 1020272.978 1000529.009 1535485.696 1222730.093 1414843.863 1168008.023 893467.5081 1.502223217 2.165968581 1.412034147 1.141925105 1.119826966 1.71856915 1.36852217 1.583542603 1.307275321 1 19.76905574 -1 0.041194199 0.006643898 3.845627521 0.255127452 0.277917643 1143.756131 3.592363498 90.13282708 302.7310824 0.1 1 3.838983623 EVS(ph)DSEAGGGPQGERK ddPTM_HeLa_A486_30min_R1 2 EVSDSEAGGGPQGERK 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.616)DS(0.384)EAGGGPQGERK;EVS(1)DSEAGGGPQGERK ; 190.96 2.68E-18 1529190000 1124150 848590 430690 316330 728210 743780 868450 827270 570610 1245560 TRUE FALSE FALSE 1045352.89 781344.6379 597464.7023 736432.2264 636871.1115 652019.9858 651154.6245 638918.6802 620070.9342 933663.6688 1.119624684 0.836858779 0.639914267 0.788755363 0.682120482 0.698345676 0.697418831 0.684313529 0.66412666 1 19.83254342 -4.332077916 2.8672719 0.71858785 1.159800455 0.578500502 0.098954941 0.209494326 2.625978471 0.023136679 0.19680907 4.66E-05 4.332077916 0.441212604 EVS(ph)GHSVR ddPTM_HeLa_A485_30min_R1 1 EVSGHSVR 8 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 EVS(0.85)GHS(0.15)VR 85.622 0.0035663 566240000 245390 350500 296750 288750 332230 322880 408060 518710 346290 428240 TRUE FALSE FALSE 299976.1589 391487.9261 406530.1738 304523.6813 299152.0147 339785.4975 320874.6475 391495.5592 415787.2266 321487.6492 0.933087662 1.217738619 1.264528124 0.94723291 0.930524129 1.056916178 0.998093234 1.217762363 1.293322551 1 18.29440379 -10.03573024 6.5606273 0.999999956 1.094423908 0.042592798 0.135705249 9.36E-08 1.39E-08 0.139163591 0.033752112 9.21E-11 10.03573024 0.094423952 EVS(ph)GHSVR ddPTM_HeLa_A486_30min_R1 1 EVSGHSVR 8 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 EVS(0.834)GHS(0.166)VR 83.278 0.0048734 363340000 335920 223970 287910 95939 296990 396490 340670 312990 318660 400090 TRUE FALSE FALSE 312373.7427 206221.8015 399396.4625 223350.8405 259738.7449 347575.095 255430.7628 241729.0095 346281.7054 299904.8599 1.041576128 0.687624074 1.331743883 0.744738984 0.866070477 1.158951193 0.851705981 0.806018981 1.154638526 1 18.19414538 EVS(ph)PAPAVAGQSK ddPTM_HeLa_A485_30min_R1 2 EVSPAPAVAGQSK 13 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK ; 138.19 5.85E-05 312840000 604430 598860 478890 725950 768320 726320 999520 988270 601610 1034320 TRUE FALSE FALSE 738883.3682 668891.4676 656051.3393 765606.8103 691823.3631 764348.9921 785964.3867 745895.233 722347.6087 776483.0592 0.951576933 0.861437297 0.844901034 0.985992935 0.890970324 0.984373043 1.012210604 0.96060722 0.930281221 1 19.56659492 -5.76594232 1.285954699 0.974548748 0.88971624 0.360113311 0.044625504 0.479814001 1.666714044 0.017995067 0.025595156 1.71E-06 5.76594232 -0.084832507 EVS(ph)PAPAVAGQSK ddPTM_HeLa_A486_30min_R1 1 EVSPAPAVAGQSK 13 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 EVS(1)PAPAVAGQSK 196.18 2.12E-18 349690000 424730 506000 304650 188170 461630 475590 516010 522780 355160 469520 TRUE FALSE FALSE 394958.6203 465902.7172 422618.6388 438069.2696 403728.0609 416916.5412 386898.8402 403754.4062 385945.5548 351949.1359 1.122203694 1.323778551 1.200794648 1.244694829 1.147120477 1.184593166 1.099303282 1.147195333 1.096594693 1 18.42500742 -7.50774211 0.368520395 0.99244659 1.24367319 0.598513212 0.053471253 0.772734768 0.321779461 0.071987646 0.057004811 3.11E-08 7.50774211 0.2512266 EVS(ph)PEVVR ddPTM_HeLa_A485_30min_R1 6 EVSPEVVR 8 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR ;;;;; 187.5 5.53E-06 12457270000 2886120 3762010 3587450 2820600 4419870 3525550 4116830 4705430 3251970 3628970 TRUE FALSE FALSE 3528127.437 4201944.344 4914597.041 2974682.236 3979812.224 3710142.346 3237235.639 3551415.915 3904610.55 2724334.565 1.295041909 1.542374567 1.803962371 1.091893145 1.460838281 1.361852686 1.188266552 1.303590227 1.433234596 1 21.37747246 -12.92965875 0.100093145 5.56E-15 1.675804559 0.310944388 0.182405168 173.4960551 1.487871274 39.33851949 3.359863412 1.18E-13 12.92965875 1.675804559 EVS(ph)PEVVR ddPTM_HeLa_A486_30min_R1 6 EVSPEVVR 8 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR ;;;;; 242.12 1.29E-12 13117850000 5428580 5823500 4878740 1721595 6532380 5120630 5903130 5868220 4718670 5608160 TRUE FALSE FALSE 5048064.575 5362024.651 6767918.785 4007960.165 5713027.988 4488898.733 4426104.437 4532154.408 5127688.115 4203840.233 1.200822176 1.275506288 1.609937203 0.953404493 1.359002167 1.067809071 1.052871706 1.078098633 1.219762843 1 22.00327641 -5.276119319 24.99962306 1.114609521 1.353430358 0.394652503 0.14573933 828.1019811 1410238.005 0.04037809 0.060178646 5.30E-06 5.276119319 0.238820837 EVS(ph)PGSR ddPTM_HeLa_A485_30min_R1 3 EVSPGSR 7 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVS(0.998)PGS(0.002)R;EVS(0.999)PGS(0.001)R;EVS(1)PGSR ;; 139.98 0.0015245 3027190000 2185720 2972360 2620360 2534550 2475630 2605590 2826250 3011370 2865710 3327410 TRUE FALSE FALSE 2671925.873 3319951.646 3589740.206 2673006.049 2229147.585 2742014.663 2222398.599 2272826.786 3440831.711 2497947.923 1.069648349 1.329071601 1.437075678 1.070080775 0.892391536 1.097706897 0.889689724 0.90987757 1.377463349 1 21.25231197 -5.427538532 6.745045517 1.016574316 1.281986535 0.334396995 0.158586203 0.269579774 16.26740894 0.044450243 0.06602868 3.74E-06 5.427538532 0.265412218 EVS(ph)PGSR ddPTM_HeLa_A486_30min_R1 3 EVSPGSR 7 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVS(0.998)PGS(0.002)R;EVS(0.995)PGS(0.005)R;EVS(0.999)PGS(0.001)R ;; 124.81 0.0017652 1173680000 3223900 2759460 3182680 1078510 2955460 3476280 2952590 2644560 3359140 3504680 TRUE FALSE FALSE 2997921.258 2540790.34 4415098.931 2510825.785 2584758.648 3047411.918 2213820.753 2042451.418 3650312.96 2627085.316 1.141158698 0.967151818 1.680607365 0.95574581 0.983888354 1.159997317 0.842690848 0.777459112 1.389491592 1 21.32503162 EVS(ph)PGSRDILDGVR ddPTM_HeLa_A485_30min_R1 4 EVSPGSRDILDGVR 14 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVS(0.976)PGS(0.024)RDILDGVR;EVS(0.986)PGS(0.014)RDILDGVR;EVS(1)PGSRDILDGVR;EVS(1)PGSRDILDGVR ;;; 171.98 1.47E-12 723360000 426396 1221030 1022970 306828 1719860 1668830 1895870 3865770 860890 494610 TRUE FALSE FALSE 521246.3192 1363818.837 1401409.172 323589.2367 1548624.7 1756207.358 1490801.887 2917683.846 1033662.726 371312.8296 1.403792914 3.672964487 3.774200783 0.871473353 4.170673826 4.729724422 4.014948496 7.857751237 2.783805578 1 18.50227564 -5.972229136 24.57602852 4.496210718 2.603536535 0.143405001 1.83563275 289.2316117 255955.9314 0.547809367 0.621144608 1.07E-06 5.972229136 -1.892674182 EVS(ph)PGSRDILDGVR ddPTM_HeLa_A486_30min_R1 2 EVSPGSRDILDGVR 14 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVS(0.97)PGS(0.03)RDILDGVR;EVS(0.97)PGS(0.03)RDILDGVR ; 126.84 1.27E-05 188166000 171561 157177 217738 97875 486620 151668 258830 339970 120269 213111 TRUE FALSE FALSE 159535.4598 144721.7221 302051.9848 227857.9463 425583.582 132956.7442 194067.9964 262566.2525 130694.0138 159746.6185 0.998678165 0.90594545 1.890819272 1.426371015 2.664116374 0.832297707 1.214848854 1.643642006 0.81813321 1 17.28542587 -7.767689669 24.9921353 0.909066327 1.455485181 0.148140659 0.515754677 317.3196433 1268760.206 0.465230971 0.131959507 1.71E-08 7.767689669 0.546418854 EVS(ph)PLLPK ddPTM_HeLa_A485_30min_R1 4 EVSPLLPK 8 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK ;;; 115.78 0.00096591 897454000 2448230 1913710 1754550 3449210 2582200 2253350 2947090 2471350 2056260 4422360 TRUE FALSE FALSE 2992830.317 2137501.737 2403631.058 3637631.608 2325107.101 2371331.922 2317420.146 1865247.538 2468932.521 3319947.04 0.901469295 0.643836095 0.723996808 1.09568965 0.700344636 0.714267997 0.698029251 0.56183051 0.743666237 1 21.6627288 EVS(ph)PLLPK ddPTM_HeLa_A486_30min_R1 5 EVSPLLPK 8 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK;EVS(1)PLLPK ;;;; 152.37 0.00019293 1334049000 2643950 3068780 1774870 1068070 2511230 3132270 3423000 3105310 2647320 3521880 TRUE FALSE FALSE 2458622.758 2825598.696 2462147.197 2486520.937 2196248.117 2745842.374 2566529.195 2398298.701 2876791.829 2639978.324 0.931304146 1.070311324 0.932639171 0.941871725 0.831918996 1.040100348 0.972178132 0.908453937 1.089702822 1 21.33209465 -7.762431023 24.99999807 1.044851409 0.955845101 0.234213316 0.065902335 39.95111852 1006953.77 0.052869825 0.016644674 1.73E-08 7.762431023 -0.089006308 EVS(ph)PPGAR ddPTM_HeLa_A485_30min_R1 2 EVSPPGAR 8 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 EVS(1)PPGAR;EVS(1)PPGAR ; 100.57 0.0021417 1377580000 304887 393656 381882 331822 473723 387877 406255 438488 361093 409258 TRUE FALSE FALSE 372708.0613 439690.6448 523156.0432 349948.5956 426557.4748 408185.6399 319455.3005 330948.1305 433561.053 307237.5124 1.213094255 1.431109897 1.702773984 1.139016499 1.388363912 1.328567064 1.039766589 1.077173578 1.411159235 1 18.22899485 -6.624691456 5.741793332 1.139684467 1.380749999 0.30810974 0.173286778 0.272799285 13.09766324 0.067678986 0.051988949 2.37E-07 6.624691456 0.241065532 EVS(ph)PPGAR ddPTM_HeLa_A486_30min_R1 2 EVSPPGAR 8 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 EVS(1)PPGAR;EVS(1)PPGAR ; 74.376 0.013466 1781900000 802970 860200 663760 194430 1002300 743500 640650 824140 738210 463290 TRUE FALSE FALSE 746685.9495 792034.6192 920785.6481 452642.8659 876582.1879 651774.5294 480352.5939 636501.3128 802198.6372 347279.1685 2.150102907 2.280685659 2.651427818 1.30339769 2.524142729 1.876802839 1.38318862 1.832823188 2.309953231 1 18.40573635 -10.35388049 0.145494986 1.91E-13 2.511729325 0.364017183 0.418816065 39.61326975 1.04576559 19.11883784 3.078023802 4.43E-11 10.35388049 2.511729325 EVS(ph)PSDVR ddPTM_HeLa_A486_30min_R1 1 EVSPSDVR 8 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 EVS(0.74)PS(0.26)DVR 80.755 0.0085972 1037900000 2588100 3020600 2031100 640630 2400000 2540000 2394700 2385600 2175300 2708600 TRUE FALSE FALSE 2406687.555 2781236.655 2817596.315 1491419.016 2098969.621 2226640.625 1795520.731 1842450.957 2363856.755 2030348.93 1.185356625 1.369831862 1.387739946 0.734562909 1.033797487 1.096678798 0.884340965 0.90745533 1.164261335 1 20.95329626 -5.242457049 24.99839713 0.974398453 1.31986175 0.617037494 0.122675609 532.5868447 701378.648 0.032966264 0.056980987 5.72E-06 5.242457049 0.345463297 EVS(ph)SLKNK ddPTM_HeLa_A485_30min_R1 1 EVSSLKNK 8 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 EVS(0.567)S(0.433)LKNK 68.893 0.0085634 151430000 139250 171850 86395 169570 257120 229780 389380 515120 142710 312200 TRUE FALSE FALSE 170225.6821 191946.3626 118356.1057 178833.1797 231520.23 241810.9255 306185.7821 388786.0123 171350.588 234374.2856 0.726298457 0.818973643 0.50498759 0.763023893 0.987822659 1.03172976 1.306396652 1.658825375 0.73109807 1 17.83845477 -6.036263064 1.677790371 1.212697356 0.689689817 0.433653545 0.236560334 0.319094398 1.81334576 0.092118589 0.099184648 9.20E-07 6.036263064 -0.52300754 EVS(ph)SLKNK ddPTM_HeLa_A486_30min_R1 2 EVSSLKNK 8 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 EVS(0.701)S(0.299)LKNK;EVS(0.707)S(0.293)LKNK ; 79.974 0.0044601 310290000 503540 366570 200578 325680 581570 531480 818920 835140 298460 779140 TRUE FALSE FALSE 468244.4463 337521.6582 278247.1733 758199.499 508624.0677 465911.4013 614017.5543 644996.853 324330.7531 584038.2726 0.801735893 0.577910171 0.476419417 1.298201735 0.87087455 0.797741215 1.051331022 1.10437429 0.555324485 1 19.15570339 -5.236552576 24.99682596 0.952411007 0.614610656 0.372004886 0.199605191 823.6435155 827283.8632 0.053163374 0.092032036 5.80E-06 5.236552576 -0.337800351 EVS(ph)SRPS(ph)TPGLSVVSGISATSEDIPNK ddPTM_HeLa_A485_30min_R1 2 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.5)S(0.5)RPS(0.541)T(0.459)PGLSVVSGISATSEDIPNK;EVS(0.499)S(0.499)RPS(0.549)T(0.452)PGLSVVSGISATSEDIPNK ; 207.05 1.77E-28 2367300000 1084960 903290 650610 1135670 785900 759190 941550 703470 735570 1323830 TRUE FALSE FALSE 1326305.609 1008921.908 891297.7131 1197708.776 707653.0365 798940.0145 740380.1507 530942.8795 883192.152 993823.5443 1.334548388 1.015192198 0.896836987 1.205152347 0.712050988 0.8039053 0.744981496 0.534242605 0.888681051 1 19.9226302 -5.768830677 24.99857364 0.756735645 1.090515647 0.513075698 0.156948668 135.5444277 458432.41 0.047552171 0.054985384 1.70E-06 5.768830677 0.333780002 EVS(ph)SRPS(ph)TPGLSVVSGISATSEDIPNK ddPTM_HeLa_A486_30min_R1 3 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.615)S(0.385)RPS(0.558)T(0.441)PGLSVVSGISATSEDIPNK;EVS(0.499)S(0.499)RPS(0.542)T(0.461)PGLSVVSGISATSEDIPNK;EVS(0.8)S(0.206)RPS(0.512)T(0.465)PGLS(0.01)VVS(0.002)GIS(0.002)AT(0.003)S(0.001)EDIPNK ;; 232.55 3.98E-39 2307800000 1003510 989100 544290 395164 692800 963140 961680 909700 762060 1190130 TRUE FALSE FALSE 933169.1311 910720.1138 755053.6646 919961.7625 605902.5639 844317.5793 721057.4924 702581.1686 828115.9744 892113.7016 1.0460204 1.020856548 0.846364834 1.03121582 0.679176391 0.946423733 0.80825739 0.787546663 0.928262813 1 19.76686807 -4.606499867 1.139870957 0.859671892 1.094774301 0.245209936 0.102028287 1.186333302 1.953057444 0.031148052 0.291676443 2.47E-05 4.606499867 0.235102409 EVS(ph)SRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A485_30min_R1 4 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.5)S(0.5)RPS(0.521)T(0.479)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.5)S(0.5)RPS(0.535)T(0.465)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.499)S(0.499)RPS(0.522)T(0.479)PGLS(0.001)VVSGISATSEDIPNKIEDLR;EVS(0.5)S(0.5)RPS(0.525)T(0.474)PGLS(0.001)VVSGISATSEDIPNKIEDLR ;;; 136.82 6.45E-07 7077360000 290142 262420 215525 368740 355644 301788 422364 384011 275201 467981 TRUE FALSE FALSE 354683.0869 293107.7362 295256.6662 388883.3325 320234.8346 317589.153 332122.481 289831.7001 330431.3164 351321.9493 1.009567116 0.834299527 0.840416225 1.106914422 0.911513884 0.903983237 0.945350786 0.824974644 0.940537069 1 18.42243419 -3.819277524 8.793599727 0.92059009 4.46476754 0.092535631 0.080875491 82020.59028 67696.78551 0.020358113 5640908.945 0.000151608 3.819277524 3.54417745 EVS(ph)SRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A486_30min_R1 2 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.5)S(0.5)RPS(0.5)T(0.5)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.529)S(0.471)RPS(0.529)T(0.471)PGLSVVSGISATSEDIPNKIEDLR ; 104.86 8.04E-05 5822700000 115811 117737 73120 53808 116077 121579 143163 140739 87516 137531 TRUE FALSE FALSE 107693.2469 108407.0913 101434.0222 125267.7433 101517.5403 106579.8191 107342.1032 108695.802 95101.95734 103092.3424 1.044628965 1.051553285 0.983914225 1.215102309 0.984724354 1.033828669 1.041222856 1.054353791 0.922492933 1 16.65357765 -7.746802102 24.8771837 0.961246478 1.051277717 0.247804654 0.062664726 263.5428496 447916.3516 0.04137247 0.01548589 1.79E-08 7.746802102 0.090031239 EVS(ph)SRPSTPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A485_30min_R1 2 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVS(0.461)S(0.461)RPS(0.026)T(0.026)PGLS(0.026)VVS(0.002)GISATSEDIPNKIEDLR;EVS(0.446)S(0.388)RPS(0.011)T(0.014)PGLS(0.119)VVS(0.019)GIS(0.003)ATSEDIPNKIEDLR ; 170.64 1.05E-14 188368000 52380 58907 47939 67835 78886 69602 87804 99651 54713 96880 TRUE FALSE FALSE 64031.75029 65795.66123 65673.63101 71540.65428 71031.83285 73246.25309 69043.95811 75211.436 65693.39724 72729.59894 0.880408406 0.904661406 0.902983544 0.983652534 0.976656463 1.007103767 0.949324059 1.034124168 0.903255321 1 16.150255 -5.234500439 5.067306963 0.980579616 0.895662529 0.563067172 0.033573525 0.130682212 9.531351237 0.008581186 0.014626049 5.83E-06 5.234500439 -0.084917086 EVS(ph)SRPSTPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A486_30min_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVS(0.487)S(0.445)RPS(0.023)T(0.023)PGLS(0.021)VVSGISATSEDIPNKIEDLR 90.3 0.00010938 80498000 38503 38785 27302 22011 45390 42095 49042 51825 35033 50800 TRUE FALSE FALSE 35804.13853 35711.53535 37874.06557 51242.72037 39696.76296 36901.74689 36771.17289 40025.57883 38069.68865 38079.34935 0.940250796 0.937818948 0.994609052 1.345682667 1.042474823 0.969075037 0.96564604 1.051109841 0.999746301 1 15.21672121 -9.439077769 14.06651782 0.999999999 1.030754615 0.004489272 0.11263697 0 0 0.116718662 0.028308434 3.64E-10 9.439077769 0.030754616 EVS(ph)TYIKK ddPTM_HeLa_A486_30min_R1 1 EVSTYIKK 8 1 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 0 EVS(0.844)T(0.156)YIKK 94.616 0.0018578 160220000 175460 167420 80641 105250 170780 190600 192180 209220 130580 251120 TRUE FALSE FALSE 163161.1601 154153.0295 111867.3548 245027.319 149359.1799 167085.7099 144094.5313 161585.1732 141898.7795 188237.9175 0.866781583 0.818926556 0.59428704 1.301689491 0.793459585 0.887630463 0.765491529 0.85840927 0.75382676 1 17.52219774 -11.51574783 2.006330186 2.611884573 0.851217682 0.065616456 0.170812985 15872676.57 893584.6111 116508679.5 0.046423559 3.05E-12 11.51574783 -1.760666891 EVSDS(ph)EAGGGPQGER ddPTM_HeLa_A486_30min_R1 2 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.352)DS(0.648)EAGGGPQGER;EVS(0.152)DS(0.848)EAGGGPQGER ; 362.81 2.30E-105 2743090000 1299720 1132510 719930 326359 758120 980460 873760 798780 951650 1238640 TRUE FALSE FALSE 1208616.34 1042765.783 998706.1764 759780.2453 663029.5204 859500.8138 655136.0063 616915.2312 1034139.788 928476.4818 1.301719929 1.123093372 1.075639713 0.818308552 0.714104809 0.925710915 0.705603232 0.664438188 1.113802889 1 19.82450584 -4.942802425 1.732722186 0.825192009 1.255025419 0.538573325 0.138098256 0.280015031 1.599667757 0.040184629 0.128574006 1.14E-05 4.942802425 0.429833411 EVSDS(ph)EAGGGPQGERK ddPTM_HeLa_A486_30min_R1 1 EVSDSEAGGGPQGERK 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.232)DS(0.768)EAGGGPQGERK 181.6 6.89E-18 994330000 825430 639640 256010 193370 468750 485970 586140 541310 425600 916900 TRUE FALSE FALSE 767571.6195 588952.5969 355143.9282 450175.1324 409955.0041 426015.9624 439481.5724 418065.5297 462491.3507 687302.272 1.116789004 0.856904772 0.516721598 0.65498857 0.596469735 0.61983785 0.639429826 0.608270257 0.672908223 1 19.3905852 -4.466609557 3.34451011 0.644840125 1.105251327 0.562740437 0.122990119 0.16034676 3.296582816 0.028854788 0.141466646 3.41E-05 4.466609557 0.460411202 EVSGHS(ph)VR ddPTM_HeLa_A485_30min_R1 1 EVSGHSVR 8 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 EVS(0.405)GHS(0.595)VR 85.533 0.0036159 662920000 160260 240150 174690 210840 241090 220600 279800 333410 255340 266890 TRUE FALSE FALSE 195909.2841 268233.4535 239315.1005 222357.6553 217086.2331 232150.2749 220018.4442 251640.6747 306584.3959 200359.2347 0.97779014 1.338762617 1.194430098 1.109794892 1.083485038 1.158670201 1.098119807 1.255947474 1.530173522 1 17.61222948 -7.431041463 5.888630128 1.304965127 1.145923835 0.115931644 0.148135133 0.375899029 19.21883162 0.079475229 0.03693786 3.71E-08 7.431041463 -0.159041292 EVSGHS(ph)VR ddPTM_HeLa_A486_30min_R1 1 EVSGHSVR 8 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 EVS(0.007)GHS(0.993)VR 94.409 0.0023386 332550000 165620 131450 159990 57825 169360 186260 189790 154640 166770 227070 TRUE FALSE FALSE 154010.8933 121033.4233 221942.4127 134619.5223 148117.2896 163281.135 142302.5346 119431.8478 181225.7579 170210.194 0.90482767 0.711082106 1.303931377 0.790901644 0.870202225 0.959291163 0.836040023 0.701672708 1.064717416 1 17.37695792 EVSRSPTTSS(ph)ITSGYFSHSASNATLSDMVVPSSDSSDQLAIQTK ddPTM_HeLa_A485_30min_R1 1 EVSRSPTTSSITSGYFSHSASNATLSDMVVPSSDSSDQLAIQTK 44 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y9Z7 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 EVS(0.046)RS(0.046)PT(0.119)T(0.119)S(0.119)S(0.129)IT(0.129)S(0.129)GY(0.113)FS(0.037)HS(0.009)AS(0.003)NAT(0.001)LSDMVVPSSDSSDQLAIQTK 95.817 1.31E-05 200590000 55282 90007 69132 44876 124070 86047 93264 134020 72827 79365 TRUE FALSE FALSE 67579.29018 100532.5357 94706.80362 47327.46225 111717.1552 90552.28787 73337.3845 101151.3849 87442.71089 59580.7661 1.134246748 1.687332041 1.589553304 0.794341284 1.875054023 1.519824161 1.230890257 1.697718769 1.467633208 1 15.86255905 -9.977719447 5.11423509 0.999997453 1.452485154 0.16407552 0.300156968 8.84E-06 1.77E-06 0.280569345 0.068047659 1.05E-10 9.977719447 0.4524877 EVSS(ph)LK ddPTM_HeLa_A485_30min_R1 1 EVSSLK 6 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 EVS(0.077)S(0.923)LK 75.043 0.025037 281650000 403900 412250 412370 468370 490440 326620 430800 352510 300660 585310 TRUE FALSE FALSE 493746.1616 460459.0514 564922.8231 493955.8671 441610.0716 343721.3181 338756.0607 266056.3698 360999.7042 439402.9888 1.123675018 1.047919707 1.285659947 1.12415227 1.005022912 0.7822462 0.770946191 0.60549513 0.821568613 1 18.74518516 -6.090330087 2.3131871 0.765232316 1.149072294 0.702314916 0.106806396 0.156439933 1.651322874 0.038386768 0.039572623 8.12E-07 6.090330087 0.383839978 EVSS(ph)LK ddPTM_HeLa_A486_30min_R1 2 EVSSLK 6 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 EVS(0.03)S(0.97)LK;EVS(0.026)S(0.974)LK ; 88.294 0.016458 484340000 1389590 1376580 832950 597370 1211030 1452910 1688020 1516590 1048140 2098600 TRUE FALSE FALSE 1292186.917 1267494.787 1155490.547 1390707.549 1059131.325 1273664.736 1265659.542 1171295.564 1138993.619 1573096.9 0.821428684 0.805732175 0.73453234 0.884057142 0.673277867 0.809654342 0.80456553 0.744579411 0.724045428 1 20.58517611 -10.75048868 6.440631022 1.005479814 0.778294634 0.577185294 0.057005278 0.004361047 0.000168948 0.053663667 0.012785204 1.78E-11 10.75048868 -0.22718518 EVSS(ph)RPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A485_30min_R1 3 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.487)S(0.51)RPS(0.512)T(0.489)PGLS(0.001)VVSGISATSEDIPNKIEDLR;EVS(0.483)S(0.512)RPS(0.506)T(0.477)PGLS(0.012)VVS(0.003)GIS(0.003)AT(0.002)S(0.002)EDIPNKIEDLR;EVS(0.482)S(0.518)RPS(0.518)T(0.482)PGLSVVSGISATSEDIPNKIEDLR ;; 60.955 0.0076208 4818354000 81379 75445 54663.6 100715 90428 83917 104292 112064 74553 116093 TRUE FALSE FALSE 99481.4778 84267.63647 74885.94038 106216.8054 81424.67081 88310.76436 82009.16221 84580.12829 89515.10326 87153.15163 1.141455885 0.966891442 0.859245351 1.2187374 0.9342711 1.013282511 0.940977586 0.97047699 1.027101161 1 16.41126522 EVSS(ph)RPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A486_30min_R1 2 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.121)S(0.879)RPS(0.53)T(0.47)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.102)S(0.898)RPS(0.536)T(0.464)PGLSVVSGISATSEDIPNKIEDLR ; 186.42 3.52E-21 5687300000 172092 178783 104666 75691 169734 173654 199235 193664 138342 211262 TRUE FALSE FALSE 160029.2395 164615.584 145195.4783 176212.4732 148444.379 152230.3351 149384.2957 149570.9349 150333.5959 158360.6201 1.010536833 1.039498228 0.916866063 1.112729118 0.9373819 0.961289082 0.943317193 0.944495764 0.949311741 1 17.2728541 EVSS(ph)RPSTPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A485_30min_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVS(0.136)S(0.862)RPS(0.001)T(0.001)PGLSVVSGISATSEDIPNKIEDLR 294.71 6.44E-93 350780000 100280 101940 77621 127960 139520 134630 167570 160270 110220 168850 TRUE FALSE FALSE 122586.94 113860.9962 106336.238 134950.1308 125628.8989 141679.0186 131767.3006 120963.5312 132340.143 126758.8025 0.967088184 0.898249226 0.83888642 1.064621377 0.991086193 1.117705563 1.039512034 0.954281114 1.044031187 1 16.95172641 -5.269141124 24.99877732 1.030679057 0.90109207 0.576667947 0.050557451 406.6560079 1319947.565 0.014474207 0.021935743 5.38E-06 5.269141124 -0.129586986 EVSSRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A485_30min_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVSS(0.001)RPS(0.499)T(0.499)PGLS(0.001)VVSGISATSEDIPNKIEDLR 99.725 7.44E-05 84823000 26625 26812 27043 32719 34311 37353 39177 41317 28688 55484 TRUE FALSE FALSE 32547.63939 29947.43017 37047.33105 34506.35612 30894.87637 39308.74532 30806.5139 31183.94097 34445.41846 41652.85991 0.781402273 0.718976566 0.889430669 0.828427056 0.741722812 0.943722602 0.73960141 0.748662662 0.826964068 1 15.34612793 -8.036363826 22.38797384 1.000000001 0.800417058 0.438198673 0.067867999 1418.374283 873244.871 0.064958554 0.016772227 9.20E-09 8.036363826 -0.199582943 EVSSRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_A486_30min_R1 3 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVS(0.005)S(0.025)RPS(0.485)T(0.485)PGLSVVSGISATSEDIPNKIEDLR;EVSSRPS(0.612)T(0.388)PGLSVVSGISATSEDIPNKIEDLR;EVS(0.001)S(0.003)RPS(0.498)T(0.498)PGLSVVSGISATSEDIPNKIEDLR ;; 229.22 9.95E-40 2420766000 341415 328849 218871 154168 349064 328558 371983 377185 263372 463629 TRUE FALSE FALSE 317483.5716 302789.8076 303623.7128 358910.8952 305281.1382 288023.8545 278908.919 291308.2094 286201.297 347533.2807 0.913534298 0.871254134 0.873653632 1.032738201 0.878422745 0.828766252 0.802538734 0.838216728 0.823521985 1 18.40679162 -5.995458255 24.99965922 0.845948632 0.92060059 0.161158484 0.066134772 200.0538094 1101164.89 0.020154651 0.02276956 1.01E-06 5.995458255 0.074651958 EVSTYIK ddPTM_HeLa_A485_30min_R1 2 EVSTYIK 7 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ; ; 146.94 0.0033065 272290000 384970 366310 377280 445260 500100 431020 551060 501500 411910 626500 FALSE FALSE TRUE 470605.2484 409146.768 516851.5719 469583.4263 450308.288 453587.5407 433321.5293 378506.3387 494576.5587 470325.0799 1.000595691 0.869923348 1.098924114 0.998423104 0.957440518 0.964412829 0.921323459 0.804776005 1.051563227 1 18.84329874 -6.292298834 2.056772974 0.93066842 0.988519445 0.044810585 0.079209143 0.847174533 7.04010551 0.031808278 0.02861561 5.10E-07 6.292298834 0.057851026 EVSTYIK ddPTM_HeLa_A486_30min_R1 2 EVSTYIK 7 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ; ; 132.09 0.0060907 111510000 72334 86996 66648 27172 93252 91151 91262 97636 82137 90893 FALSE FALSE TRUE 67263.76013 80102.12013 92455.8905 63257.7892 81555.46462 79905.71638 68427.28233 75406.41418 89256.70129 68132.80119 0.987244895 1.175676308 1.356995293 0.928448385 1.197007362 1.172793647 1.004322164 1.106756406 1.310040094 1 16.0560619 -5.262501605 24.99993688 1.109957664 1.173542563 0.054166932 0.13271424 352.1736583 8288656.901 0.036649875 0.058081813 5.46E-06 5.262501605 0.063584899 EVSTYIK(ac)K ddPTM_HeLa_A485_30min_R1 2 EVSTYIKK 8 1 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 1 ; EVSTYIK(1)K;EVSTYIK(1)K 178.83 5.00E-06 312790000 401400 474270 500350 433410 584530 519890 696040 689590 447730 725060 FALSE TRUE FALSE 490690.0452 529731.7509 685450.2863 457086.0908 526332.1408 547110.6365 547325.3679 520466.9713 537585.3042 544315.8857 0.901480295 0.973206487 1.259287675 0.839744168 0.96696083 1.005134428 1.005528926 0.956185526 0.987634788 1 19.05408462 EVSTYIK(ac)K ddPTM_HeLa_A486_30min_R1 2 EVSTYIKK 8 1 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 1 ; EVSTYIK(1)K;EVSTYIK(1)K 190.26 1.05E-06 250170000 416550 477680 461340 165468 556310 500120 596430 584710 430830 618380 FALSE TRUE FALSE 387351.9961 439826.8971 639983.2031 385217.8663 486532.4124 438420.2792 447196.9056 451584.2971 468174.6913 463533.623 0.835650267 0.948856513 1.380661879 0.831046222 1.049616227 0.945821959 0.964756133 0.974221232 1.010012366 1 18.82231446 EVSTYIKK ddPTM_HeLa_A485_30min_R1 4 EVSTYIKK 8 1 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ;;; ;;; 140.5 0.00029009 985842000 861090 1297300 694280 939805 1551420 1825120 2071540 2588880 1175440 1483890 FALSE FALSE TRUE 1052636.5 1449007.95 951123.0634 991144.1674 1396955.177 1920680.461 1628938.556 1953953.121 1411340.026 1113983.532 0.944930037 1.300744498 0.853803522 0.889729641 1.254017799 1.724155166 1.462264485 1.754023345 1.266930781 1 20.08729647 -5.993513026 5.569583659 1.491150786 1.012999492 0.438222754 0.233302056 0.139728455 14.87956107 0.071821924 0.078328708 1.02E-06 5.993513026 -0.478151295 EVSTYIKK ddPTM_HeLa_A486_30min_R1 2 EVSTYIKK 8 1 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ; ; 84.743 0.0022255 376680000 808980 521340 660400 200854 617940 426220 435180 502670 391150 501400 FALSE FALSE TRUE 752274.6796 480027.1197 916124.5661 467598.2626 540432.2031 373637.3099 326293.3611 388223.0142 425055.1969 375846.1764 2.001549375 1.277190377 2.437498699 1.244121377 1.437907945 0.994122951 0.86815666 1.032930594 1.130928618 1 18.5197828 -5.750228059 1.656608094 1.009172036 1.829687629 0.579636731 0.308270789 0.259458795 1.474968192 0.105988494 0.143623107 1.78E-06 5.750228059 0.820515593 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPTLPS(ph)PTSVITQAPPSNR ddPTM_HeLa_A485_30min_R1 1 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPTLPSPTSVITQAPPSNR 50 2 P17544;K7ELQ4;P17544-1 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 EVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHPT(0.007)LPS(0.915)PT(0.034)S(0.034)VIT(0.01)QAPPSNR 161.62 6.73E-19 1872500000 152610 208030 189250 114400 242620 170480 210910 225490 152810 146330 TRUE FALSE FALSE 186557.568 232357.2989 259261.4503 120649.3823 218463.9009 179406.0692 165847.3555 170188.2239 183477.5653 109852.624 1.69825318 2.115172951 2.360084274 1.098284028 1.988699887 1.633152333 1.509725935 1.549241318 1.670215591 1 16.74520981 -9.518368993 0.100886159 8.23E-15 2.517016229 0.392262576 0.311201381 44.34414927 1.100898318 20.20517482 7.95556548 3.03E-10 9.518368993 2.517016229 EVVEEAENGR ddPTM_HeLa_A485_30min_R1 2 EVVEEAENGR 10 0 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ; ; 251.75 5.08E-35 174716000 112956 145285 144867 121984 152573 122620 142140 141770 123351 149386 FALSE FALSE TRUE 138082.6725 162274.8169 198459.3317 128647.677 137382.2964 129040.1936 111770.6278 107000.6852 148106.4143 112146.8194 1.231266952 1.446985458 1.769638521 1.147136207 1.22502178 1.150636231 0.996645544 0.954112526 1.320647478 1 16.77502918 -5.412805699 8.513261959 1.109654205 1.478651641 0.529439104 0.159823742 0.250045017 17.61991617 0.045933003 0.06817333 3.87E-06 5.412805699 0.368997437 EVVKPVPIT(ph)SPAVSK ddPTM_HeLa_A485_30min_R1 1 EVVKPVPITSPAVSK 15 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 EVVKPVPIT(0.53)S(0.469)PAVS(0.002)K 59.9 0.034664 927390000 102550 95683 76838 123140 129260 109660 134410 146230 84827 149520 TRUE FALSE FALSE 125361.8937 106872.2945 105263.5737 129866.8264 116390.4205 115401.628 105692.2055 110366.8632 101851.0008 112247.4157 1.116835456 0.952113631 0.937781712 1.156969411 1.036909579 1.028100534 0.941600346 0.983246363 0.907379472 1 16.7763227 -6.721426057 7.168977129 0.956680388 1.03530237 0.262156726 0.065701734 0.304460883 42.42217905 0.026120403 0.01990696 1.90E-07 6.721426057 0.078621982 EVVKPVPITS(ph)PAVSK ddPTM_HeLa_A485_30min_R1 3 EVVKPVPITSPAVSK 15 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 EVVKPVPIT(0.183)S(0.817)PAVSK;EVVKPVPIT(0.249)S(0.751)PAVSK;EVVKPVPIT(0.12)S(0.88)PAVSK ;; 154.55 1.45E-08 16747850000 7109780 5980900 4351330 7178220 8382700 6974680 10078600 10588800 5787790 9461300 TRUE FALSE FALSE 8691326.033 6680314.228 5961068.041 7570347.982 7548088.955 7339863.46 7925224.775 7991880.197 6949346.364 7102772.032 1.22365268 0.940522123 0.839259378 1.065830066 1.062696215 1.033380126 1.115793206 1.125177629 0.978399185 1 22.75995075 -5.413744767 20.81504642 1.061731897 0.987992522 0.049068069 0.099216314 18.16210408 3439.467331 0.028156237 0.041762379 3.86E-06 5.413744767 -0.073739375 EVVKPVPITS(ph)PAVSK ddPTM_HeLa_A486_30min_R1 4 EVVKPVPITSPAVSK 15 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 EVVKPVPIT(0.248)S(0.752)PAVSK;EVVKPVPIT(0.207)S(0.793)PAVSK;EVVKPVPIT(0.103)S(0.897)PAVSK;EVVKPVPIT(0.248)S(0.752)PAVSK ;;; 145.88 3.79E-08 16796650000 6376100 5920000 3307000 2377150 5966400 6211000 7592900 7258600 4370160 7399900 TRUE FALSE FALSE 5929168.316 5450877.64 4587558.965 5534125.335 5218038.478 5444749.969 5693076.11 5605975.234 4748968.987 5546916.875 1.068912416 0.982686015 0.82704664 0.997693937 0.940709694 0.981581317 1.026349635 1.01064706 0.856145692 1 22.40325467 -6.300534985 22.47826077 0.978823004 0.958809571 0.002983445 0.071183663 1042.107952 599159.7724 0.02567474 0.022643786 5.01E-07 6.300534985 -0.020013433 EVVYWS(ph)PK ddPTM_HeLa_A486_30min_R1 2 EVVYWSPK 8 0 E6ZCI6;C0MHM2;Q86VZ5 E6ZCI6 SGMS1 Phosphatidylcholine:ceramide cholinephosphotransferase 1 1 0 EVVYWS(1)PK;EVVYWS(1)PK ; 72.2 0.015127 113277000 207139 268280 174408 144296 284510 290560 335120 318820 239040 372750 TRUE FALSE FALSE 192619.6258 247020.5157 241943.4484 335928.3803 248824.1028 254713.6614 251269.4315 246231.6458 259760.1797 279410.9738 0.689377454 0.884075927 0.865905319 1.202273396 0.890530889 0.911609369 0.899282616 0.881252595 0.929670643 1 18.09202916 -4.239731536 1.854888002 0.947332447 0.600516635 0.419182112 0.092160023 0.924022504 3.138398244 0.025779536 0.56731699 5.76E-05 4.239731536 -0.346815812 EVWYFGLHYVDNK ddPTM_HeLa_A485_30min_R1 1 EVWYFGLHYVDNK 13 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 88.087 0.0064494 19002000 24033 20043 23458 26978 35795 29333 37479 33807 22117 47034 FALSE FALSE TRUE 29379.05794 22386.8545 32136.09037 28451.73983 32231.12412 30868.83052 29471.30547 25515.78024 26555.67903 35309.2894 0.832048972 0.634021666 0.910131326 0.805786248 0.912822792 0.874241058 0.834661529 0.72263647 0.752087609 1 15.10776017 -11.42489143 2.290272804 2.788983596 0.809694532 0.326906292 0.082332382 2909031.922 529027.6887 26877609.16 0.022771864 3.76E-12 11.42489143 -1.979289064 EVWYFGLHYVDNK ddPTM_HeLa_A486_30min_R1 1 EVWYFGLHYVDNK 13 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 99.941 0.0017731 24934000 21075 34626 30947 14735 44944 46545 53803 40252 46055 45017 FALSE FALSE TRUE 19597.75133 31882.10965 42930.50719 34303.82467 39306.70443 40802.75113 40340.92033 31087.49829 50047.08448 33744.45019 0.580769615 0.944810464 1.272224231 1.016576784 1.164834638 1.209169238 1.195483112 0.921262552 1.48312046 1 15.04236263 -4.37921915 2.8002947 1.153141356 0.54275435 0.577646736 0.150990427 0.220824114 2.707766393 0.036225207 0.267425331 4.18E-05 4.37921915 -0.610387006 EVYELLDS(ph)PGK ddPTM_HeLa_A485_30min_R1 4 EVYELLDSPGK 11 0 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK ;;; 203.29 9.65E-15 5432500000 2390260 1731050 1696850 3827470 2748270 1734140 2695020 2094410 1931730 4386880 TRUE FALSE FALSE 2921965.091 1933481.239 2324585.427 4036554.994 2474642.589 1824936.889 2119206.961 1580752.664 2319410.492 3293311.551 0.887242232 0.587093328 0.705850446 1.2256827 0.751414663 0.554134299 0.643488151 0.479988801 0.704279099 1 21.65110757 -6.002928689 24.99976888 0.643038699 0.842977922 0.135213177 0.199590673 216.2924121 1846333.204 0.063291784 0.070468715 9.93E-07 6.002928689 0.199939223 EVYELLDS(ph)PGK ddPTM_HeLa_A486_30min_R1 6 EVYELLDSPGK 11 0 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK ;;;;; 237.41 1.05E-21 6281990000 6711380 8328300 4017800 3689860 6488850 8859270 10032250 8745010 6024910 10279810 TRUE FALSE FALSE 6240946.92 7668335.177 5573599.76 8590180.555 5674957.927 7766303.342 7522074.94 6753962.125 6547154.05 7705678.666 0.809915283 0.99515377 0.723310691 1.114785722 0.736464389 1.007867532 0.976172932 0.876491535 0.849653137 1 22.87749059 -5.228837407 24.99914241 0.928387725 0.858029386 0.116017463 0.11552798 1857.751153 1424518.356 0.029574902 0.051220701 5.90E-06 5.228837407 -0.070358339 EVYELLDS(ph)PGKVLLQSK ddPTM_HeLa_A485_30min_R1 3 EVYELLDSPGKVLLQSK 17 1 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 EVYELLDS(1)PGKVLLQSK;EVYELLDS(1)PGKVLLQSK;EVYELLDS(1)PGKVLLQSK ;; 273.33 4.33E-60 1964075000 1437127 1251870 752573 2265415 2140687 1695225 2839940 3140480 1169672 3291260 TRUE FALSE FALSE 1756810.943 1398265.307 1030981.07 2389168.885 1927552.686 1783984.36 2233163.619 2370272.356 1404414.442 2470809.453 0.711026478 0.565913857 0.4172645 0.966957967 0.780130043 0.722024257 0.903818632 0.959310056 0.568402569 1 21.23655232 -5.263589319 24.99790901 0.836133898 0.564852836 0.454490963 0.139537935 172.5799128 2006638.849 0.038000113 0.059625723 5.45E-06 5.263589319 -0.271281062 EVYELLDS(ph)PGKVLLQSK ddPTM_HeLa_A486_30min_R1 3 EVYELLDSPGKVLLQSK 17 1 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 EVYELLDS(1)PGKVLLQSK;EVYELLDS(1)PGKVLLQSK;EVYELLDS(1)PGKVLLQSK ;; 185.87 4.90E-18 1317757000 473229 413373 226621 368285 496297 529366 855880 810780 344491 811290 TRUE FALSE FALSE 440058.0909 380615.818 314374.7203 857386.0921 434046.8025 464058.2051 641729.7714 626183.0932 374351.7573 608137.7034 0.723615866 0.625871108 0.516946604 1.409855181 0.713731117 0.7630808 1.055237601 1.029673197 0.615570709 1 19.21403851 EVYMT(ph)PLR ddPTM_HeLa_A486_30min_R1 2 EVYMTPLR 8 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 EVYMT(1)PLR;EVYMT(1)PLR ; 106.4 0.0067294 495580000 484480 624460 473240 163759 549240 558320 535360 519770 514440 448540 TRUE FALSE FALSE 450520.4539 574975.5154 656491.2018 381239.2279 480349.1977 489440.155 401407.2655 401429.7175 559032.0734 336222.6645 1.339946712 1.710103381 1.952548924 1.13388914 1.428663943 1.455702446 1.193873311 1.193940088 1.662684085 1 18.35905745 -5.2716676 24.99217329 1.31160162 1.671790054 0.363990713 0.2246158 743.3248935 1816277.964 0.062072562 0.093231199 5.35E-06 5.2716676 0.360188434 EVYQQQQYGS(ph)GGR ddPTM_HeLa_A485_30min_R1 3 EVYQQQQYGSGGR 13 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 EVYQQQQYGS(1)GGR;EVYQQQQYGS(1)GGR;EVYQQQQYGS(1)GGR ;; 271.79 1.89E-48 1057420000 387163 471860 525870 413409 585944 442488 487139 509782 456107 520530 TRUE FALSE FALSE 473286.0737 527039.9224 720411.1963 435992.4869 527605.358 465655.9875 383057.7731 384757.1652 547643.4912 390771.4506 1.211158269 1.348716549 1.843561486 1.115722467 1.350163522 1.191632569 0.980260386 0.984609199 1.401441918 1 18.57596554 -6.004155754 1.416795611 1.09603778 1.428836658 0.290998542 0.210191453 0.519948142 2.145543792 0.08841274 0.098857494 9.90E-07 6.004155754 0.332798878 EVYQQQQYGS(ph)GGR ddPTM_HeLa_A486_30min_R1 2 EVYQQQQYGSGGR 13 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 EVYQQQQYGS(1)GGR;EVYQQQQYGS(1)GGR ; 216.54 3.08E-27 792360000 489830 521910 431160 186484 562700 483980 538490 572010 421470 609820 TRUE FALSE FALSE 455495.4465 480551.9508 598116.6989 434144.1764 492120.919 424271.4683 403754.1064 441775.8099 458003.359 457117.1027 0.996452427 1.051266618 1.308453994 0.949743892 1.076575162 0.928146127 0.883261869 0.966439031 1.001938795 1 18.80220427 -5.82009064 1.767633871 0.953982247 1.103110738 0.2804427 0.094253753 0.436554603 2.816240377 0.034358693 0.043480351 1.51E-06 5.82009064 0.149128491 EWFLQAAK ddPTM_HeLa_A486_30min_R1 1 EWFLQAAK 8 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 98.523 0.026797 3359200 9489.8 16488 14673 8594.8 24982 16963 18398 19984 14334 14518 FALSE FALSE TRUE 8824.614025 15181.43083 20354.77856 20009.12876 21848.52461 14870.27753 13794.62581 15434.07945 15576.48266 10882.5983 0.810892195 1.395018948 1.870396939 1.838635241 2.007656995 1.366427126 1.267585683 1.418234783 1.431320189 1 13.40973543 -6.495334836 24.53083753 1.314547711 1.612296831 0.157966375 0.330022118 1178.104389 1049231.57 0.124867627 0.109824327 3.20E-07 6.495334836 0.29774912 EWGSGS(ph)PPCVPGPQEGLRPMSDSVGGAFR ddPTM_HeLa_A485_30min_R1 1 EWGSGSPPCVPGPQEGLRPMSDSVGGAFR 29 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 EWGS(0.08)GS(0.92)PPCVPGPQEGLRPMSDSVGGAFR 68.046 0.0027785 127410000 59894 63770 70179 76110 80475 63269 65509 64203 90195 97914 TRUE FALSE FALSE 73217.21367 71227.34677 96141.13249 80267.69658 72462.62644 66581.66701 51512.46699 48457.11358 108296.3092 73505.84177 0.996073399 0.969002532 1.307938664 1.091990713 0.985807722 0.905801028 0.700794192 0.659228062 1.473302075 1 16.16557129 -5.927938208 3.254013329 0.913003946 1.097713843 0.07368117 0.224108379 0.555784551 11.89979015 0.074726132 0.084755676 1.18E-06 5.927938208 0.184709897 EWGSGS(ph)PPCVPGPQEGLRPMSDSVGGAFR ddPTM_HeLa_A486_30min_R1 2 EWGSGSPPCVPGPQEGLRPMSDSVGGAFR 29 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 EWGS(0.332)GS(0.668)PPCVPGPQEGLRPMSDSVGGAFR;EWGS(0.013)GS(0.987)PPCVPGPQEGLRPMSDSVGGAFR ; 80.593 0.0015211 282160000 159489 208200 164995 64882 193189 172613 158207 184636 174579 178341 TRUE FALSE FALSE 148309.6447 191701.4737 228885.4827 151048.575 168957.4342 151317.7631 118621.9353 142598.4134 189711.6483 133683.2528 1.109410802 1.433997675 1.712147767 1.12989901 1.263863877 1.131912636 0.887335794 1.066688687 1.419113048 1 17.02845922 -5.442671336 24.32581992 1.126656138 1.420227954 0.327256541 0.190607141 95.78812282 29050.01268 0.055146838 0.081795956 3.61E-06 5.442671336 0.293571816 EWHHFLVVNMK ddPTM_HeLa_A485_30min_R1 2 EWHHFLVVNMK 11 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 ; ; 94.297 0.0053478 36263000 50481 34481 40078 66034 52617 45128 58586 57564 35783 89661 FALSE FALSE TRUE 61710.32429 38513.25301 54904.51998 69641.27021 47378.26673 47490.8323 46068.6225 43446.33874 42964.31988 67310.16279 0.916805453 0.5721759 0.815694357 1.034632325 0.703879842 0.705552183 0.684422984 0.64546477 0.63830361 1 16.03853673 EWHHFLVVNMK ddPTM_HeLa_A486_30min_R1 3 EWHHFLVVNMK 11 0 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 ;; ;; 94.297 0.0053478 61807000 46654.8 84280 73653 45411.6 114151 106578 116699 105574 84264 107674 FALSE FALSE TRUE 43384.53945 77601.34586 102173.4141 105720.4998 99833.11716 93429.48997 87499.67588 81537.10486 91568.07137 80711.72956 0.537524591 0.961463052 1.265905398 1.309852984 1.23690965 1.157570163 1.084101113 1.010226213 1.13450761 1 16.30049073 -4.349025261 2.892359553 1.156114997 0.486886957 0.779631083 0.098422293 0.158134751 2.047365124 0.028090109 0.221082449 4.48E-05 4.349025261 -0.66922804 EWNGVVS(ph)ESDS(ph)PVKRPGR ddPTM_HeLa_A485_30min_R1 1 EWNGVVSESDSPVKRPGR 18 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 EWNGVVS(0.953)ES(0.055)DS(0.991)PVKRPGR 82.475 0.001416 155890000 96478 89578 74495 144260 123880 92945 146440 123160 82035 181420 TRUE FALSE FALSE 117939.1983 100053.3679 102053.8005 152140.5585 111546.0722 97811.45648 115151.8977 92954.81689 98498.67203 136195.3328 0.86595624 0.734631399 0.749319367 1.117076154 0.81901538 0.718170399 0.845490777 0.68251103 0.723216207 1 17.05531774 -5.999175016 24.99819258 0.776297362 0.863811951 0.058994347 0.127971227 75.05063664 2273995.316 0.040407958 0.045421221 1.00E-06 5.999175016 0.087514589 EWNGVVSES(ph)DS(ph)PVKRPGR ddPTM_HeLa_A486_30min_R1 1 EWNGVVSESDSPVKRPGR 18 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 EWNGVVS(0.454)ES(0.56)DS(0.986)PVKRPGR 49.577 0.029127 248100000 142030 144980 92293 70795 144260 181870 208910 186720 123420 206250 TRUE FALSE FALSE 132074.4304 133491.2568 128031.3213 164814.3378 126165.5656 159432.7285 156638.5084 144207.9321 134118.145 154603.6575 0.854277528 0.863441777 0.828126083 1.066044235 0.816058091 1.031235166 1.013161725 0.932758865 0.867496585 1 17.23821492 -5.222218517 24.99973972 0.95722829 0.85009776 0.338773562 0.071787014 643.5610664 410211.0926 0.019015739 0.03293548 5.99E-06 5.222218517 -0.107130529 EWNGVVSESDS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 EWNGVVSESDSPVK 14 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EWNGVVSESDS(1)PVK;EWNGVVSESDS(1)PVK ; 268.17 2.70E-42 346861000 593540 690440 297780 256872 497650 723790 774460 677490 509610 807060 TRUE FALSE FALSE 551935.911 635727.0199 413088.3908 598010.9976 435230.0966 634496.1488 580681.9166 523240.3165 553783.4051 604966.9229 0.912340642 1.050845915 0.682828061 0.988501974 0.719427923 1.048811306 0.959857299 0.864907314 0.915394519 1 19.20649674 -6.299677858 24.99980768 0.9494797 0.876889158 0.126270929 0.112814016 1465.88591 958371.8169 0.038921921 0.034326455 5.02E-07 6.299677858 -0.072590542 EWNGVVSESDS(ph)PVKRPGR ddPTM_HeLa_A485_30min_R1 4 EWNGVVSESDSPVKRPGR 18 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EWNGVVSES(0.006)DS(0.994)PVKRPGR;EWNGVVSES(0.006)DS(0.994)PVKRPGR;EWNGVVSESDS(1)PVKRPGR;EWNGVVSESDS(1)PVKRPGR ;;; 273.64 2.32E-69 4052570000 1611880 1417790 1165840 2089800 1815180 1547560 2213900 1708930 1462870 2870240 TRUE FALSE FALSE 1970437.145 1583588.207 1597132.731 2203960.482 1634454.306 1628587.849 1740882.179 1289812.238 1756454.591 2154741.991 0.914465469 0.734931706 0.74121762 1.022841942 0.75853829 0.75581571 0.807930688 0.598592427 0.81515773 1 21.0390837 EWNGVVSESDS(ph)PVKRPGR ddPTM_HeLa_A486_30min_R1 4 EWNGVVSESDSPVKRPGR 18 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EWNGVVSES(0.001)DS(0.999)PVKRPGR;EWNGVVSESDS(1)PVKRPGR;EWNGVVSESDS(1)PVKRPGR;EWNGVVSES(0.004)DS(0.996)PVKRPGR ;;; 261.06 3.17E-58 14674900000 8061740 8661280 5170580 3454770 8040580 9247780 10348530 10055320 7285290 11483210 TRUE FALSE FALSE 7496653.657 7974928.629 7172767.049 8042879.154 7032055.481 8106882.928 7759218.338 7765943.142 7916784.803 8607739.473 0.870920139 0.926483504 0.833292768 0.934377624 0.816945669 0.941813231 0.901423465 0.902204715 0.919728673 1 23.03720298 -9.08946853 0.37924812 1.022215288 0.880733204 0.442563928 0.038069003 4.610275741 0.856561603 0.185728595 0.027451271 8.14E-10 9.08946853 -0.141482085 EWNGVVSESDS(ph)PVKRPGRK ddPTM_HeLa_A485_30min_R1 2 EWNGVVSESDSPVKRPGRK 19 3 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EWNGVVSESDS(1)PVKRPGRK;EWNGVVS(0.002)ES(0.134)DS(0.864)PVKRPGRK ; 169.05 8.33E-12 2220030000 506690 548910 377150 642290 598390 759890 1038290 1046630 460520 1059390 TRUE FALSE FALSE 619401.4424 613100.2496 516673.4795 677376.6763 538812.1905 799676.6654 816450.8595 789942.3514 552942.1399 795303.5696 0.778823918 0.770900915 0.649655678 0.851720905 0.677492484 1.00549865 1.026590211 0.993258903 0.69525922 1 19.60114612 -6.26378498 24.9467584 0.948854383 0.747669954 0.483422765 0.102478345 181.7088069 1932564.537 0.035094334 0.032437218 5.45E-07 6.26378498 -0.201184429 EWNGVVSESDS(ph)PVKRPGRK ddPTM_HeLa_A486_30min_R1 3 EWNGVVSESDSPVKRPGRK 19 3 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 EWNGVVSESDS(1)PVKRPGRK;EWNGVVSES(0.024)DS(0.976)PVKRPGRK;EWNGVVSES(0.002)DS(0.998)PVKRPGRK ;; 160.36 1.60E-11 2371810000 914900 783720 451180 469130 765810 830890 1128870 1057100 614700 1388170 TRUE FALSE FALSE 850770.2345 721615.1729 625888.979 1092158.349 669754.9689 728383.2397 846414.786 816421.4063 667982.6909 1040563.197 0.81760554 0.693485197 0.601490598 1.049583872 0.643646605 0.699989431 0.813419876 0.784595697 0.641943414 1 19.98893316 -10.24619624 4.910713963 1.000049548 0.75069094 0.273051837 0.12259176 6.45E-05 9.91E-06 0.115211288 0.027937298 5.67E-11 10.24619624 -0.249358608 EWPVSSFNRPFPNS(ph)P ddPTM_HeLa_A485_30min_R1 1 EWPVSSFNRPFPNSP 15 1 Q96H12 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 0 EWPVSSFNRPFPNS(1)P 178.02 2.30E-12 103600000 118600 155980 165240 153730 198500 169880 236530 249620 162000 196860 TRUE FALSE FALSE 144982.1608 174220.5042 226369.1522 162127.8806 178736.643 178774.6541 185993.4332 188400.3036 194511.914 147786.4249 0.981024887 1.178866761 1.531731702 1.097041766 1.209425312 1.209682514 1.258528537 1.274814677 1.31616902 1 17.17315423 -6.707362604 23.92416664 1.2352795 1.210926498 0 0.152897089 662.2275841 292972.3183 0.058799591 0.045545877 1.96E-07 6.707362604 -0.024353002 EWPVSSFNRPFPNS(ph)P ddPTM_HeLa_A486_30min_R1 1 EWPVSSFNRPFPNSP 15 1 Q96H12 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 0 EWPVSSFNRPFPNS(1)P 150.39 7.11E-07 119910000 125500 161520 161770 41848 172380 166290 174280 194910 156730 157050 TRUE FALSE FALSE 116703.0981 148720.567 224411.6764 97424.25888 150758.493 145774.8305 130673.3007 150533.2479 170315.4826 117723.6578 0.991330887 1.263302294 1.906258101 0.827567379 1.280613395 1.238279826 1.110000344 1.278700057 1.446739643 1 16.84504475 EWSLES(ph)SPAQNWTPPQPR ddPTM_HeLa_A485_30min_R1 1 EWSLESSPAQNWTPPQPR 18 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 EWSLES(0.469)S(0.469)PAQNWT(0.062)PPQPR 119.62 3.86E-05 172140000 45371 56989 71306 46099 79059 69964 70556 86490 65544 55504 TRUE FALSE FALSE 55463.62242 63653.36781 97685.05669 48617.27164 71187.60837 73627.20686 55481.13421 65278.19189 78698.07959 41667.87428 1.33108836 1.527636553 2.344373415 1.166780703 1.708453085 1.767001752 1.33150863 1.5666312 1.888699171 1 15.34664788 -10.54110156 3.07608107 0.975724468 1.626732469 0.2587769 0.31773246 37056763.87 42975633.62 7472032.079 0.082199167 2.88E-11 10.54110156 0.651008002 EWSLESS(ph)PAQNWTPPQPR ddPTM_HeLa_A485_30min_R1 1 EWSLESSPAQNWTPPQPR 18 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 EWSLES(0.119)S(0.78)PAQNWT(0.1)PPQPR 75.574 0.0047124 149980000 41648 50127 47000 30522 62131 49416 54220 64977 43257 59370 TRUE FALSE FALSE 50912.45392 55988.9166 64387.25583 32189.33957 55945.01948 52003.34535 42635.45406 49041.28887 51938.28312 44570.15162 1.142299321 1.25619758 1.444627256 0.722217412 1.25521268 1.16677515 0.95659208 1.100316851 1.165315379 1 15.44379025 -5.219717859 24.99987522 1.065757242 1.278556917 0.313139897 0.154308293 643.2661175 385449.3731 0.04100668 0.071024729 6.03E-06 5.219717859 0.212799675 EWSLESSPAQNWT(ph)PPQPR ddPTM_HeLa_A485_30min_R1 1 EWSLESSPAQNWTPPQPR 18 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 EWSLES(0.034)S(0.338)PAQNWT(0.628)PPQPR 101.39 0.001359 163250000 34504 45798 43558 35188 56175 42220 56641 55982 39297 54529 TRUE FALSE FALSE 42179.29576 51153.67771 59671.9168 37110.23134 50582.01976 44430.57392 44539.18764 42252.32672 47183.54745 40935.92383 1.030373614 1.249603598 1.457690733 0.906544371 1.235638897 1.085368785 1.088022047 1.032157645 1.152619583 1 15.32107983 -5.269358976 24.99981221 1.080926732 1.246260746 0.283579087 0.126413476 782.3014283 2469491.709 0.034912291 0.052849172 5.38E-06 5.269358976 0.165334014 EWSLESSPAQNWT(ph)PPQPR ddPTM_HeLa_A486_30min_R1 3 EWSLESSPAQNWTPPQPR 18 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 EWSLESS(0.002)PAQNWT(0.998)PPQPR;EWSLESS(0.001)PAQNWT(0.999)PPQPR;EWSLES(0.01)S(0.061)PAQNWT(0.929)PPQPR ;; 173.51 7.88E-12 280130000 247178 260723 259193 111099 341866 265354 307693 325584 243932 311622 TRUE FALSE FALSE 229852.0986 240062.3599 359559.471 258644.0866 298985.9785 232617.3214 230704.957 251455.6306 265076.2222 233589.8229 0.983998771 1.027708986 1.539277125 1.107257514 1.279961493 0.995836713 0.987649865 1.076483674 1.134793541 1 17.83361789 -6.271145495 24.80949799 1.040526554 1.193825295 0.198400171 0.149159951 1088.229791 2781581.647 0.053990997 0.048217495 5.36E-07 6.271145495 0.153298741 EWYQSTIPQS(ph)PSPAPDDPEEGRQGQTEK ddPTM_HeLa_A485_30min_R1 1 EWYQSTIPQSPSPAPDDPEEGRQGQTEK 28 1 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;Q08499-5;Q08499-8;Q08499-4;Q08499-6 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 EWY(0.003)QS(0.006)T(0.005)IPQS(0.919)PS(0.067)PAPDDPEEGRQGQT(0.001)EK 47.191 0.02233 165060000 20891 27137 25639 23040 41030 27880 40885 40411 31855 44537 TRUE FALSE FALSE 25538.13088 30310.43609 35123.93303 24298.61686 36944.90913 29339.75369 32149.58575 30500.13889 38248.00631 33434.74554 0.763820106 0.90655501 1.050521918 0.726747474 1.104985503 0.877522865 0.961562148 0.912228832 1.143959844 1 15.02906052 -1.687623262 0.285397957 1.008656412 2.30E-22 0.227871342 0.113615201 60.27457491 1.21623249 0.120349444 28.29603837 0.020529423 1.687623262 -1.008656412 EYAENIGDGRS(ph)PEFR ddPTM_HeLa_A485_30min_R1 4 EYAENIGDGRSPEFR 15 1 A0A087WUB9;Q8WYA6-3;Q8WYA6-2;Q8WYA6-4;Q8WYA6 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 1 0 EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR ;;; 227.08 3.64E-34 2337540000 1002070 1146180 1315910 1196010 1374940 1039770 1106120 900270 1226030 1533970 TRUE FALSE FALSE 1224977.014 1280215.781 1802719.869 1261344.998 1238046.146 1094210.749 869788.4258 679477.3709 1472082.975 1151579.51 1.063736376 1.111704203 1.565432394 1.095317334 1.075085251 0.950182545 0.755300367 0.590039476 1.278316402 1 20.13518259 -6.012585455 1.887089119 0.875517928 1.232772213 0.301988119 0.210586919 0.388555428 2.786139592 0.079892992 0.087095571 9.71E-07 6.012585455 0.357254285 EYAENIGDGRS(ph)PEFR ddPTM_HeLa_A486_30min_R1 3 EYAENIGDGRSPEFR 15 1 A0A087WUB9;Q8WYA6-3;Q8WYA6-2;Q8WYA6-4;Q8WYA6 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 1 0 EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR ;; 225.69 4.37E-34 1495290000 854810 983860 838120 289124 989050 963620 959420 945000 882740 950390 TRUE FALSE FALSE 794892.2332 905895.3504 1162662.51 673095.2835 864994.1265 844738.3618 719362.9683 729844.1292 959256.6139 712406.158 1.11578518 1.271599551 1.632021982 0.944819575 1.214186762 1.185753874 1.00976523 1.024477569 1.346502417 1 19.44234046 -5.285659507 24.99716056 1.10877917 1.332982104 0.302313346 0.164177237 974.4841495 1005745.57 0.046048564 0.068339188 5.18E-06 5.285659507 0.224202934 EYCLS(ph)PR ddPTM_HeLa_A485_30min_R1 3 EYCLSPR 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 EYCLS(1)PR;EYCLS(1)PR;EYCLS(1)PR ;; 120.31 0.0020431 1329280000 1147230 1442220 1410960 1145090 1829340 1280310 1591170 1579620 1300220 1501990 TRUE FALSE FALSE 1402427.356 1610875.083 1932932.819 1207643.367 1647204.486 1347345.052 1251203.531 1192215.718 1561162.228 1127571.535 1.243759098 1.428623403 1.714244071 1.071012641 1.460842559 1.194908713 1.109644481 1.05733045 1.384534975 1 20.10478753 -6.148415005 1.156063027 1.13706819 1.418836529 0.282693073 0.181982817 0.623610322 1.73642887 0.088697342 0.088758886 7.11E-07 6.148415005 0.281768339 EYCLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 EYCLSPR 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 EYCLS(1)PR;EYCLS(1)PR ; 100.25 0.0044971 760070000 397630 521970 471720 153872 640520 444980 521970 526150 427540 441830 TRUE FALSE FALSE 369758.1904 480607.1962 654382.6171 358221.7923 560180.009 390082.8918 391367.5852 406357.1308 464599.5114 331192.8922 1.116443617 1.451139827 1.975835329 1.081610749 1.69140106 1.177811786 1.181690774 1.226950035 1.402806408 1 18.33731219 -6.293847511 24.74375278 1.211026066 1.469882138 0.208479358 0.257800904 985.3990874 752353.4511 0.08925676 0.078723636 5.08E-07 6.293847511 0.258856071 EYDS(ph)GDTDEIIAMK ddPTM_HeLa_A485_30min_R1 1 EYDSGDTDEIIAMK 14 0 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 1 0 EYDS(0.994)GDT(0.006)DEIIAMK 83.087 0.0032537 27635000 48295 47464 38511 80218 59911 59635 55423 49760 53909 85233 TRUE FALSE FALSE 59038.05613 53014.50192 52757.82148 84600.10622 53946.05048 62757.39639 43581.42329 37556.28198 64728.04182 63985.9817 0.922671725 0.828533071 0.82452156 1.322166262 0.843091706 0.980799149 0.681108926 0.586945468 1.01159723 1 15.96546825 -6.744150328 24.97051925 0.785491681 0.953802894 0.103822575 0.181523171 445.6501033 643650.9734 0.069774593 0.05391603 1.80E-07 6.744150328 0.168311213 EYEGGRGES(ph)SKR ddPTM_HeLa_A485_30min_R1 2 EYEGGRGESSKR 12 2 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 EYEGGRGES(0.941)S(0.059)KR;EYEGGRGES(0.976)S(0.024)KR ; 106.52 0.00023836 638570000 372410 353560 304760 495250 577550 501880 668950 709760 412510 697510 TRUE FALSE FALSE 455251.3197 394905.7664 417503.4061 522304.2535 520047.0941 528157.6607 526023.3677 535690.2471 495296.9732 523633.5937 0.869408161 0.754164307 0.79731975 0.997461316 0.993150746 1.008639757 1.004563829 1.023024981 0.94588464 1 18.99819813 -5.262282174 24.79101558 0.997814802 0.801684085 0.878399838 0.032226394 19.1797304 564185.2835 0.008557423 0.013584185 5.47E-06 5.262282174 -0.196130717 EYEGGRGES(ph)SKR ddPTM_HeLa_A486_30min_R1 2 EYEGGRGESSKR 12 2 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 EYEGGRGES(0.975)S(0.025)KR;EYEGGRGES(0.984)S(0.016)KR ; 159.34 3.58E-09 499720000 483790 420190 336000 309190 582370 572550 750390 701250 423800 720860 TRUE FALSE FALSE 449878.8193 386892.6141 466108.1984 719809.9456 509323.7242 501914.6023 562634.4852 541590.6832 460535.3252 540351.964 0.83256627 0.716001125 0.8626011 1.332113129 0.942577724 0.928866065 1.04123705 1.00229243 0.852287686 1 19.0435399 -5.010337381 24.93341221 1.015684991 0.778037987 0.399460802 0.121493966 462.142958 1114681.67 0.032533119 0.061668443 9.76E-06 5.010337381 -0.237647005 EYFDDS(ph)TEER ddPTM_HeLa_A485_30min_R1 1 EYFDDSTEER 10 0 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 EYFDDS(0.951)T(0.049)EER 92.112 0.0029269 226810000 149250 296080 139960 132700 97622 179880 161560 154560 134610 139730 TRUE FALSE FALSE 182450.1476 330703.9804 191737.0282 139949.065 87902.41091 189298.2387 127041.3862 116653.9177 161624.9923 104897.8825 1.739312016 3.152627798 1.827844601 1.334145758 0.837980794 1.804595422 1.211095811 1.112071234 1.540784126 1 16.67862603 -5.024546736 4.225639553 1.280890119 2.465654342 0.570841002 0.409566929 0.129788268 5.394331692 0.105280207 0.208076448 9.45E-06 5.024546736 1.184764224 EYFDDS(ph)TEER ddPTM_HeLa_A486_30min_R1 1 EYFDDSTEER 10 0 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 EYFDDS(0.694)T(0.306)EER 68.44 0.010326 0 211810 253290 197250 51089 245130 213660 238470 271790 205740 204900 TRUE FALSE FALSE 196963.2128 233218.3779 273630.4825 118937.7739 214383.5097 187300.8015 178802.2837 209909.3501 223573.7089 153591.7063 1.282381826 1.518430803 1.781544649 0.774376278 1.395801341 1.219472106 1.164140226 1.366671125 1.455636598 1 17.22874079 -5.236215968 24.99985319 1.219765643 1.526550199 0.319029633 0.219698497 997.686487 988842.8036 0.058724277 0.10166341 5.80E-06 5.236215968 0.306784555 EYGS(ph)PLK ddPTM_HeLa_A485_30min_R1 9 EYGSPLK 7 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK ;;;;;;;; 115.82 0.0024685 21523990000 8661670 6575950 5910890 14043460 9119070 7217850 11310220 8288130 7240160 17409050 TRUE FALSE FALSE 10588428.61 7344950.149 8097574.184 14810618.66 8211143.372 7595765.465 8893699.101 6255453.122 8693193.701 13069294.22 0.810176007 0.56200052 0.619587718 1.133237833 0.62827749 0.58119171 0.680503396 0.478637409 0.66516168 1 23.6396779 -10.10851318 5.419520917 1.0000047 0.681169335 0.234156665 0.171193193 239283564.4 19.16515722 14035.44021 0.042775121 7.79E-11 10.10851318 -0.318835366 EYGS(ph)PLK ddPTM_HeLa_A486_30min_R1 8 EYGSPLK 7 0 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK;EYGS(1)PLK ;;;;;;; 148.94 0.0010062 27068580000 10277400 10873740 5379660 4548500 8455570 12144030 13934880 12114890 9120040 15634750 TRUE FALSE FALSE 9557007.333 10012065.24 7462808.424 10589137.87 7394993.566 10645823.05 10448225.64 9356594.013 9910572.41 11719706.83 0.81546471 0.854293148 0.636774326 0.903532658 0.630987931 0.908369399 0.891509129 0.798364169 0.845633133 1 23.48243315 EYGS(ph)PLKAYT(ph)PVVVTLWYR ddPTM_HeLa_A485_30min_R1 1 EYGSPLKAYTPVVVTLWYR 19 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12 P21127 CDK11B Cyclin-dependent kinase 11B 2 0 EY(0.001)GS(0.999)PLKAYT(0.966)PVVVT(0.034)LWYR 118.43 2.06E-05 1452500000 258810 259170 205840 353530 403520 370060 595960 622800 231070 529720 TRUE FALSE FALSE 316381.3916 289477.677 281988.7817 372842.4487 363344.132 389435.7694 468628.2775 470057.3235 277443.6295 397670.5528 0.795586672 0.727933399 0.709101491 0.937566149 0.913681261 0.979292449 1.17843344 1.182026982 0.697672049 1 18.60121421 -5.579248662 1.484754532 1.023523111 0.738946411 0.405478125 0.131614556 0.385258351 1.737357807 0.047446939 0.077621658 2.63E-06 5.579248662 -0.284576699 EYGS(ph)PLKAYT(ph)PVVVTLWYR ddPTM_HeLa_A486_30min_R1 2 EYGSPLKAYTPVVVTLWYR 19 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12 P21127 CDK11B Cyclin-dependent kinase 11B 2 0 EYGS(1)PLKAYT(1)PVVVTLWYR;EYGS(1)PLKAY(0.008)T(0.981)PVVVT(0.011)LWYR ; 184.03 3.37E-18 3077100000 908290 975640 598390 763790 1263940 1143970 1736260 1712720 824550 1734840 TRUE FALSE FALSE 844623.5614 898326.7332 830102.6334 1778141.72 1105404.859 1002838.612 1301829.384 1322771.044 896022.6579 1300424.772 0.64949821 0.690794848 0.638331914 1.367354543 0.850033684 0.771162342 1.001080118 1.017183825 0.689023062 1 20.31055151 EYGS(ph)PLKAYT(ph)PVVVTQWYR ddPTM_HeLa_A485_30min_R1 2 EYGSPLKAYTPVVVTQWYR 19 1 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 2 0 EYGS(1)PLKAY(0.001)T(0.998)PVVVT(0.001)QWYR;EY(0.001)GS(0.999)PLKAYT(0.999)PVVVTQWYR ; 115.83 2.94E-05 632330000 308720 345220 240700 427260 547560 457310 741800 818880 299350 589670 TRUE FALSE FALSE 377393.6989 385590.476 329744.9464 450600.1319 493043.0038 481254.0445 583308.3701 618048.396 359426.7992 442676.1211 0.852527798 0.871044219 0.744889843 1.017900245 1.113778179 1.087147062 1.317686548 1.396163847 0.811940789 1 18.75589203 -5.531975114 2.658832489 1.150984306 0.827750462 0.412730212 0.155740733 0.254806041 3.633477351 0.048423759 0.070886605 2.94E-06 5.531975114 -0.323233844 EYGS(ph)PLKAYT(ph)PVVVTQWYR ddPTM_HeLa_A486_30min_R1 2 EYGSPLKAYTPVVVTQWYR 19 1 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 2 0 EYGS(1)PLKAYT(1)PVVVTQWYR;EY(0.003)GS(0.997)PLKAY(0.203)T(0.783)PVVVT(0.012)QWY(0.002)R ; 150.17 1.30E-08 457900000 447000 526850 352580 399930 652630 629580 978910 922310 454980 893330 TRUE FALSE FALSE 415667.6083 485100.4872 489108.4184 931057.2513 570771.0599 551908.8207 733976.3641 712320.1469 494418.0327 669634.3534 0.620738178 0.724425927 0.73041118 1.390396485 0.852362273 0.824194305 1.09608529 1.063744928 0.738340305 1 19.35301402 -5.031230714 24.87339205 0.994329454 0.686290953 0.399853291 0.171013608 596.377222 474978.5525 0.046045512 0.079872539 9.31E-06 5.031230714 -0.308038501 EYGS(ph)TS(ph)SIDKQGTSGESFFDLLK ddPTM_HeLa_A485_30min_R1 1 EYGSTSSIDKQGTSGESFFDLLK 23 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 2 0 EY(0.002)GS(0.881)T(0.125)S(0.539)S(0.453)IDKQGTSGESFFDLLK 158.94 1.50E-10 44051000 35279 22909 13039 39804 37336 34475 60867 54603 21330 62472 TRUE FALSE FALSE 43126.69184 25588.00827 17862.6687 41978.39173 33618.69675 36280.05769 47862.26821 41211.52864 25610.73535 46898.88011 0.919567626 0.545599558 0.380876231 0.89508303 0.716833678 0.773580469 1.020541815 0.878731614 0.546084156 1 15.51726585 -5.293780399 24.99509925 0.828427173 0.608372834 0.236007755 0.179174525 915.8986158 707859.9179 0.050824729 0.075391208 5.08E-06 5.293780399 -0.220054339 EYGS(ph)TSSIDK ddPTM_HeLa_A486_30min_R1 1 EYGSTSSIDK 10 0 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 EYGS(0.775)T(0.175)S(0.025)S(0.025)IDK 132.17 0.00012985 0 618520 700970 414940 261610 703690 726600 832280 834130 526880 806650 TRUE FALSE FALSE 575164.942 645422.5843 575615.8805 609041.301 615426.6386 636959.4795 624034.741 644216.8079 572550.3826 604659.5896 0.95122107 1.067414783 0.951966843 1.007246576 1.017806794 1.053418304 1.032043073 1.065420642 0.946897052 1 19.20576364 -5.709975355 3.723390391 1.025166477 0.99563708 0.069673421 0.042819201 0.578421692 16.40494258 0.012705803 0.016206367 1.95E-06 5.709975355 -0.029529397 EYGS(ph)TSSIDKQGTSGESFFDLLK ddPTM_HeLa_A485_30min_R1 1 EYGSTSSIDKQGTSGESFFDLLK 23 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 EYGS(0.835)T(0.124)S(0.019)S(0.023)IDKQGTSGESFFDLLK 157.95 1.32E-10 172460000 109690 114280 68132 101960 165070 147770 274850 325970 92381 143610 TRUE FALSE FALSE 134090.1621 127644.0519 93336.86201 107529.8166 148635.0512 155507.0087 216126.0522 246025.3464 110921.0193 107810.6699 1.243755949 1.183964926 0.865747908 0.997394939 1.378667355 1.442408333 2.004681469 2.282012963 1.028850107 1 16.71814044 -6.133768687 2.183333909 1.67452251 1.07161798 0.229450492 0.385578693 0.379399896 3.558528395 0.14431549 0.144671633 7.35E-07 6.133768687 -0.60290453 EYGS(ph)TSSIDKQGTSGESFFDLLK ddPTM_HeLa_A486_30min_R1 1 EYGSTSSIDKQGTSGESFFDLLK 23 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 EYGS(0.648)T(0.108)S(0.108)S(0.135)IDKQGTSGESFFDLLK 197.1 5.92E-29 109290000 105170 126230 79124 72945 160150 142560 197260 201260 101770 160590 TRUE FALSE FALSE 97798.1261 116227.0751 109762.9318 169819.6464 140062.4937 124972.3966 147903.4616 155437.4915 110591.5055 120377.2187 0.812430517 0.965523845 0.911824787 1.410729108 1.163529903 1.038173152 1.228666546 1.291253388 0.918707931 1 16.87720286 -5.083511949 16.51020956 1.161459838 0.901399031 0.406679141 0.139902584 3.754533893 740.7683574 0.037034355 0.064148691 8.25E-06 5.083511949 -0.260060808 EYGST(ph)SSIDK ddPTM_HeLa_A486_30min_R1 1 EYGSTSSIDK 10 0 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 EYGS(0.334)T(0.503)S(0.09)S(0.072)IDK 95.618 0.01153 338620000 417640 472970 273370 174630 528900 487830 553470 570190 375350 545500 TRUE FALSE FALSE 388365.5927 435490.1347 379226.1851 406547.4653 462560.4302 427646.4945 414985.952 440370.1842 407885.6402 408903.2494 0.949773799 1.06501999 0.927422772 0.994238774 1.131222192 1.045837848 1.014875652 1.076954475 0.997511369 1 18.6414 -5.552549749 24.99976394 1.048287906 0.984444189 0.261258097 0.049677123 265.5030538 223702.2689 0.014187127 0.01831576 2.80E-06 5.552549749 -0.063843717 EYIPGQPPLS(ph)QSSDS(ph)SPTR ddPTM_HeLa_A486_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLS(0.442)QS(0.442)S(0.116)DS(0.525)S(0.418)PT(0.057)R 100.04 0.00050491 1651800000 95418 117670 94676 33769 114880 97202 102010 99733 90434 97279 TRUE FALSE FALSE 88729.69094 108345.4007 131337.0827 78615.93859 100470.6792 85210.20552 76486.01905 77025.97306 98272.89193 72919.70522 1.216813626 1.485817864 1.801119222 1.078116517 1.377826184 1.168548409 1.048907409 1.056312184 1.347686358 1 16.15402111 -5.288041192 24.99527724 1.161824373 1.499707083 0.449768043 0.175896234 670.5578962 630060.0646 0.050010607 0.074199694 5.15E-06 5.288041192 0.337882711 EYIPGQPPLSQS(ph)SDS(ph)SPTR ddPTM_HeLa_A485_30min_R1 4 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLSQS(0.993)S(0.008)DS(0.582)S(0.416)PT(0.001)R;EYIPGQPPLS(0.007)QS(0.915)S(0.082)DS(0.576)S(0.419)PT(0.002)R;EYIPGQPPLS(0.005)QS(0.919)S(0.077)DS(0.536)S(0.414)PT(0.05)R;EYIPGQPPLS(0.001)QS(0.996)S(0.004)DS(0.82)S(0.178)PT(0.001)R ;;; 206.37 2.16E-25 2851640000 1042160 1278580 1415060 1245830 1483890 1172250 1378140 1277730 1262690 1559630 TRUE FALSE FALSE 1273984.897 1428098.809 1938549.58 1313886.538 1336148.701 1233627.197 1083689.131 964364.7141 1516100.301 1170842.944 1.088092048 1.219718508 1.655687118 1.122171462 1.141185253 1.053623122 0.92556319 0.823649935 1.294879308 1 20.15911614 -5.800854651 2.0337838 1.007931819 1.31016918 0.313946436 0.179919126 0.372574455 3.17020869 0.063272864 0.079748898 1.58E-06 5.800854651 0.302237362 EYIPGQPPLSQS(ph)SDS(ph)SPTR ddPTM_HeLa_A486_30min_R1 2 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLS(0.005)QS(0.956)S(0.28)DS(0.402)S(0.322)PT(0.035)R;EYIPGQPPLS(0.001)QS(0.957)S(0.043)DS(0.582)S(0.416)PT(0.002)R ; 198.35 4.06E-25 1262350000 939760 1146010 921290 349630 1127110 956080 1091860 1112990 934980 1126630 TRUE FALSE FALSE 873887.6769 1055195.994 1278038.161 813956.3093 985737.3539 838128.5703 818665.0795 859586.4734 1016024.819 844514.5149 1.034781122 1.249470525 1.513340669 0.963815654 1.167223697 0.992438325 0.969391366 1.017846891 1.203087456 1 19.68776269 -5.296533783 24.99010247 1.04534626 1.264225003 0.372678156 0.131409823 622.5763437 443324.25 0.037276163 0.055291568 5.05E-06 5.296533783 0.218878743 EYIPGQPPLSQS(ph)SDSS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLS(0.001)QS(0.939)S(0.061)DS(0.376)S(0.621)PT(0.002)R 224.57 1.60E-34 479460000 107390 129820 147910 118890 160440 120980 138420 138780 148040 149720 TRUE FALSE FALSE 131278.535 145001.3197 202628.064 125384.6597 144466.0303 127314.3257 108845.4362 104743.9874 177750.2701 112397.5594 1.167983858 1.290075341 1.802779928 1.115546106 1.285312875 1.132714326 0.968396794 0.931906244 1.581442436 1 16.77825118 EYIPGQPPLSQS(ph)SDSS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLSQS(0.997)S(0.002)DS(0.056)S(0.943)PT(0.001)R;EYIPGQPPLSQS(0.999)S(0.001)DS(0.027)S(0.966)PT(0.006)R;EYIPGQPPLSQS(1)S(0.001)DS(0.291)S(0.708)PTR ;; 235.54 3.85E-45 3470240000 1497800 1735960 1469600 600860 1778610 1666190 1770920 1809110 1501030 1893330 TRUE FALSE FALSE 1392811.955 1598396.207 2038668.477 1398832.446 1555520.149 1460632.418 1327817.085 1397215.146 1631140.489 1419227.844 0.98138714 1.126243551 1.436463134 0.985629229 1.096032716 1.029174015 0.935591202 0.984489665 1.14931545 1 20.43667479 EYIPGQPPLSQSSDS(ph)SPTR ddPTM_HeLa_A485_30min_R1 4 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 EYIPGQPPLSQS(0.002)S(0.008)DS(0.499)S(0.39)PT(0.1)R;EYIPGQPPLSQS(0.001)SDS(0.601)S(0.335)PT(0.063)R;EYIPGQPPLS(0.001)QS(0.006)S(0.006)DS(0.541)S(0.411)PT(0.034)R;EYIPGQPPLS(0.028)QS(0.028)S(0.028)DS(0.445)S(0.445)PT(0.028)R ;;; 143.67 2.51E-08 11288640000 1389170 1742957 1924123 1585140 2010380 1608062 1924380 1659320 1807401 2008640 TRUE FALSE FALSE 1698186.074 1946780.659 2635936.167 1671732.184 1810219.508 1692257.64 1513220.492 1252369.168 2170129.802 1507923.014 1.126175579 1.291034516 1.748057522 1.108632316 1.2004721 1.122244056 1.003513096 0.830525933 1.439151589 1 20.52413134 -5.472481919 24.99070092 1.093322702 1.386960784 0.290030266 0.206241052 452.1209634 224196.4866 0.058028929 0.086069575 3.37E-06 5.472481919 0.293638081 EYIPGQPPLSQSSDS(ph)SPTR ddPTM_HeLa_A486_30min_R1 3 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 EYIPGQPPLS(0.001)QS(0.001)S(0.001)DS(0.492)S(0.492)PT(0.014)R;EYIPGQPPLS(0.033)QS(0.04)S(0.033)DS(0.391)S(0.391)PT(0.112)R;EYIPGQPPLSQS(0.001)S(0.001)DS(0.487)S(0.487)PT(0.024)R ;; 139.08 8.36E-07 9696300000 3437340 3887040 3516230 1024556 4245640 3518930 3650950 3646050 3508940 3641810 TRUE FALSE FALSE 3196400.216 3579016.794 4877808.424 2385218.146 3713112.242 3084800.194 2737443.694 2815924.008 3813097.744 2729877.072 1.170895294 1.311054198 1.786823471 0.873745624 1.360175621 1.130014324 1.002771781 1.031520443 1.396801997 1 21.38040456 -5.277813446 24.99948219 1.121232166 1.411737372 0.312704893 0.209754484 1002.467578 1530538.169 0.058384599 0.086875588 5.27E-06 5.277813446 0.290505207 EYIPGQPPLSQSSDSS(ph)PTR ddPTM_HeLa_A485_30min_R1 4 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 EYIPGQPPLSQSSDS(0.2)S(0.695)PT(0.104)R;EYIPGQPPLSQS(0.002)S(0.012)DS(0.411)S(0.556)PT(0.019)R;EYIPGQPPLSQSS(0.012)DS(0.258)S(0.717)PT(0.013)R;EYIPGQPPLSQSSDS(0.013)S(0.738)PT(0.249)R ;;; 222.32 9.55E-35 31768770000 1487240 1997420 2038840 1713630 2514290 1830740 2117670 1960390 1898190 2243460 TRUE FALSE FALSE 1818071.407 2231000.894 2793091.759 1807241.268 2263958.459 1926594.716 1665212.505 1479601.279 2279139.322 1684206.71 1.079482344 1.324659782 1.65840199 1.073051934 1.344228381 1.143918205 0.988722165 0.87851525 1.353242039 1 20.68363779 -6.445068478 3.603969434 1.045769506 1.305005227 0.263840176 0.1897915 0.324524124 8.060726301 0.071956502 0.060792932 3.59E-07 6.445068478 0.259235721 EYIPGQPPLSQSSDSS(ph)PTR ddPTM_HeLa_A486_30min_R1 6 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 EYIPGQPPLSQSSDS(0.069)S(0.923)PT(0.009)R;EYIPGQPPLS(0.003)QS(0.007)S(0.007)DS(0.057)S(0.828)PT(0.098)R;EYIPGQPPLSQSSDS(0.013)S(0.987)PTR;EYIPGQPPLSQSSDS(0.138)S(0.641)PT(0.221)R;EYIPGQPPLSQSSDS(0.022)S(0.872)PT(0.106)R;EYIPGQPPLSQSSDS(0.029)S(0.964)PT(0.008)R ;;;;; 318.84 8.48E-90 37747500000 1580470 2023800 1873640 475462 2097290 1639027 1764850 1841360 1718344 1760530 TRUE FALSE FALSE 1469687.215 1863426.717 2599163.586 1106899.565 1834228.332 1436820.513 1323265.863 1422122.525 1867291.441 1319681.829 1.113667842 1.41202726 1.969538058 0.83876245 1.389901938 1.088762823 1.002715832 1.077625298 1.414955788 1 20.33175871 -5.281981011 24.99422039 1.124882452 1.489772817 0.320884546 0.254553519 966.5920098 1176107.486 0.071204057 0.105743015 5.22E-06 5.281981011 0.364890365 EYITPFIRPVMQALLHIIR ddPTM_HeLa_A485_30min_R1 3 EYITPFIRPVMQALLHIIR 19 1 O95373 O95373 IPO7 Importin-7 0 0 ;; ;; 110.37 4.91E-05 8983300 10580.8 10235.2 11394.3 7297 9997 8530.6 10370.7 9767.67 6712.84 14086.5 FALSE FALSE TRUE 12934.46246 11432.11761 15609.52573 7695.616633 9001.663578 8977.249025 8154.915224 7372.133617 8060.045414 10574.99479 1.223117619 1.081051843 1.47607881 0.727718243 0.851221561 0.848912855 0.771150756 0.697128818 0.762179611 1 13.36836933 -5.27490585 24.96893931 0.797639548 1.242179671 0.747156703 0.120180951 349.1842037 647441.2996 0.032730999 0.048850543 5.31E-06 5.27490585 0.444540123 EYITPFIRPVMQALLHIIR ddPTM_HeLa_A486_30min_R1 1 EYITPFIRPVMQALLHIIR 19 1 O95373 O95373 IPO7 Importin-7 0 0 111.92 4.08E-05 2072800 2319.9 3113.6 2433.7 1421.2 2405.7 2318.3 2959.8 2627.9 2411 2502.7 FALSE FALSE TRUE 2157.28699 2866.866996 3376.093817 3308.625423 2103.954674 2032.291717 2219.226734 2029.584537 2619.987421 1876.00763 1.149935083 1.528174486 1.79961625 1.763652434 1.121506459 1.083306744 1.18295187 1.08186369 1.396576101 1 10.87344998 -5.775350702 24.99929883 1.147336752 1.575137529 0.532978893 0.190547086 187.3129502 336608.9413 0.061620094 0.070219368 1.68E-06 5.775350702 0.427800777 EYPS(ph)PPPS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 EYPSPPPSPLR 11 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 2 0 EYPS(1)PPPS(1)PLR;EYPS(1)PPPS(1)PLR ; 140.33 1.10E-05 383470000 511180 638060 608500 560840 759010 597130 689820 664070 569110 716020 TRUE FALSE FALSE 624890.2274 712675.5666 833609.4718 591477.2691 683440.2994 628394.8035 542434.3217 501205.7913 683325.1568 537529.3914 1.162522901 1.325835532 1.550816542 1.100362657 1.271447311 1.169042686 1.009124953 0.932424904 1.271233104 1 19.03598412 -6.195873229 1.259190849 1.049340801 1.317954115 0.374588959 0.138138025 0.468009738 1.520414136 0.066454695 0.063418273 6.37E-07 6.195873229 0.268613314 EYPS(ph)PPPS(ph)PLR ddPTM_HeLa_A486_30min_R1 3 EYPSPPPSPLR 11 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 2 0 EYPS(1)PPPS(1)PLR;EYPS(1)PPPS(1)PLR;EYPS(1)PPPS(1)PLR ;; 152 1.13E-06 180470000 969850 1125990 835600 355984 1148050 931320 1044800 1039750 902290 1136720 TRUE FALSE FALSE 901868.5233 1036762.452 1159166.698 828748.7424 1004050.864 816423.2074 783379.9892 803021.6226 980501.2237 852077.9132 1.05843434 1.216746069 1.360399889 0.972620848 1.178355698 0.95815558 0.919376007 0.942427459 1.150717802 1 19.70062583 -5.282335722 24.82802698 1.015136446 1.212348715 0.418330392 0.105067188 697.4300063 828650.9332 0.030374603 0.045108193 5.22E-06 5.282335722 0.197212269 EYPS(ph)PPPS(ph)PLRR ddPTM_HeLa_A486_30min_R1 2 EYPSPPPSPLRR 12 1 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 2 0 EY(0.033)PS(0.967)PPPS(1)PLRR;EY(0.053)PS(0.947)PPPS(1)PLRR ; 54.237 0.0051677 224930000 292900 321510 288220 88683 333170 247890 253100 276090 249440 268950 TRUE FALSE FALSE 272369.2225 296032.3767 399826.5028 206458.5058 291380.7119 217307.8522 189771.703 213230.334 271061.66 201603.1694 1.35101657 1.468391482 1.983235204 1.024083631 1.445318111 1.077898987 0.941313093 1.057673521 1.344530747 1 17.62115879 -5.287230142 24.99732545 1.133110727 1.587632223 0.514376877 0.21071542 611.4769022 592663.8533 0.060260233 0.089413913 5.16E-06 5.287230142 0.454521496 EYPS(ph)PPPSPLR ddPTM_HeLa_A485_30min_R1 2 EYPSPPPSPLR 11 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 EYPS(0.996)PPPS(0.004)PLR;EYPS(0.914)PPPS(0.086)PLR ; 109.16 0.00059537 458300000 516940 692470 662930 601170 830000 668410 833020 884270 708580 903600 TRUE FALSE FALSE 631931.5196 773448.3428 908175.3938 634010.3949 747362.2857 703406.914 655038.4719 667401.396 850785.5065 678349.1495 0.931572657 1.140192102 1.338802289 0.934637267 1.101736895 1.036939332 0.965636166 0.983861182 1.254200005 1 19.3716685 EYPS(ph)PPPSPLR ddPTM_HeLa_A486_30min_R1 2 EYPSPPPSPLR 11 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 EYPS(0.963)PPPS(0.037)PLR;EYPS(1)PPPSPLR ; 117.86 0.00026369 445710000 697060 820360 649250 268940 913940 787390 805860 872510 684190 857250 TRUE FALSE FALSE 648199.6936 755351.6859 900656.9875 626105.9115 799305.123 690249.8274 604225.3045 673858.5198 743496.1401 642589.0202 1.008731356 1.175481781 1.401606562 0.97434891 1.243882323 1.074169968 0.940298208 1.04866174 1.157032126 1 19.2935368 -6.506804601 23.00232049 1.035793301 1.164082151 0.191690296 0.121783972 418.0694588 598266.2618 0.04361878 0.037323268 3.11E-07 6.506804601 0.12828885 EYQDLLNVK ddPTM_HeLa_A485_30min_R1 1 EYQDLLNVK 9 0 P08670;B0YJC4;B0YJC5;P17661;P07197-2;P07196;P12036;P12036-2;Q16352;E7EMV2;E7ESP9;P07197 P08670;P12036;Q16352;E7EMV2 VIM;DES;NEFM;NEFL;NEFH;INA Vimentin;Desmin;Neurofilament medium polypeptide;Neurofilament light polypeptide;Neurofilament heavy polypeptide;Alpha-internexin 0 0 150.85 0.00023704 61321000 33645 35433 29125 37559 44611 37515 45162 46064 31356 52099 FALSE FALSE TRUE 41129.21418 39576.58112 39899.54949 39610.75307 40169.3722 39479.22739 35512.76976 34766.73177 37648.86159 39111.67811 1.051583981 1.011886552 1.020144147 1.012760254 1.027042923 1.009397431 0.907983791 0.888909233 0.962598983 1 15.25531182 -6.685919023 5.870175386 0.930831433 1.022321434 0.634190979 0.030384467 0.117305688 6.843040029 0.01141982 0.008717536 2.06E-07 6.685919023 0.091490002 EYS(ph)LEKNLDRMKLDWVNVT(ph)FS(ph)FVK ddPTM_HeLa_A486_30min_R1 1 EYSLEKNLDRMKLDWVNVTFSFVK 24 3 Q8TD57-3;Q8TD57 Q8TD57-3 DNAH3 "Dynein heavy chain 3, axonemal" 3 0 EY(0.404)S(0.596)LEKNLDRMKLDWVNVT(1)FS(1)FVK 43.728 0.034996 719460000 287300 110980 21786 123410 54376 255500 502480 435950 92323 1173400 TRUE FALSE FALSE 267161.7536 102185.5406 30222.12265 287304.7168 47555.65504 223979.0077 376754.1893 336693.7017 100325.632 879573.0024 0.303740284 0.116176304 0.034359994 0.326641127 0.054066752 0.25464516 0.4283376 0.382792219 0.114061746 1 19.7464438 -14 0.242394406 5.497466644 0.149307217 0.75960473 0.131149467 82.44178261 0.82212206 182.8662495 0.204888494 1.00E-14 14 -5.348159426 EYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_HeLa_A485_30min_R1 4 EYSPPYAPSHQQYPPSHATPLPK 23 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 EYS(0.999)PPYAPS(0.001)HQQYPPSHATPLPK;EY(0.011)S(0.974)PPY(0.01)APS(0.003)HQQY(0.002)PPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK ;;; 216.64 4.59E-38 5848940000 3138920 3233690 2744620 2923840 4800250 3328120 5063750 4754380 3373100 5285100 TRUE FALSE FALSE 3837161.925 3611841.916 3759969.151 3083561.976 4322320.255 3502375.217 3981838.445 3588360.85 4050050.23 3967621.835 0.967118865 0.910329176 0.947663187 0.777181421 1.089398243 0.882739173 1.003583157 0.904411005 1.020775265 1 21.91984309 -5.767823057 24.99999896 0.974672662 0.904633596 0.234276244 0.07223964 258.6431194 1012906.619 0.02115363 0.024567368 1.71E-06 5.767823057 -0.070039066 EYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_HeLa_A486_30min_R1 3 EYSPPYAPSHQQYPPSHATPLPK 23 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 EYS(1)PPYAPSHQQYPPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK;EYS(1)PPYAPSHQQYPPSHATPLPK ;; 288 6.31E-76 6098210000 2654220 2900650 1771200 194090 3015450 2757160 3384210 3178900 2504510 2087120 TRUE FALSE FALSE 2468172.884 2670791.93 2457056.074 451851.3288 2637224.143 2417009.632 2537444.863 2455133.865 2721602.943 1564491.567 1.577619807 1.707130921 1.570514106 0.288816724 1.685674885 1.544917009 1.621897437 1.569285458 1.739608573 1 20.57726245 EYTINIHK ddPTM_HeLa_A485_30min_R1 1 EYTINIHK 8 0 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 H7C2W9 RPL31 60S ribosomal protein L31 0 0 69.954 0.033995 46154000 25511 24176 29350 28957 40926 20128 29956 24082 29442 56634 FALSE FALSE TRUE 31185.83394 27003.1729 40207.78636 30538.84759 36851.26374 21181.87096 23555.65588 18175.85174 35350.73934 42516.18607 0.733504974 0.635126887 0.945705391 0.718287561 0.866758455 0.498207222 0.554039721 0.427504285 0.83146544 1 15.37572456 -6.254206216 24.95706514 0.619699625 0.777626087 0.076639603 0.175343325 1025.621812 3538773.815 0.056104784 0.055023267 5.57E-07 6.254206216 0.157926462 EYTINIHKR ddPTM_HeLa_A485_30min_R1 2 EYTINIHKR 9 1 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 H7C2W9 RPL31 60S ribosomal protein L31 0 0 ; ; 177.06 1.44E-08 178387000 173515 263820 195880 125057 257040 263000 293960 399630 194285 198841 FALSE FALSE TRUE 212112.8131 294671.4541 268344.1632 131888.5472 231448.1951 276770.2733 231153.0446 301620.1159 233276.2174 149273.5981 1.420966707 1.974035984 1.797666611 0.883535662 1.550496525 1.854114035 1.548519279 2.020585822 1.562742644 1 17.18759949 -6.028518992 23.92543285 1.662866736 1.527146897 0 0.364064745 1969.668862 1652410.622 0.121193684 0.121486874 9.36E-07 6.028518992 -0.135719839 EYTINIHKR ddPTM_HeLa_A486_30min_R1 2 EYTINIHKR 9 1 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2;B8ZZK4 H7C2W9 RPL31 60S ribosomal protein L31 0 0 ; ; 160.59 1.96E-06 77176000 154365 125408 105191 42977 168148 116603 142836 147659 103842 158933 FALSE FALSE TRUE 143544.8106 115470.2134 145923.7723 100052.6279 147057.3099 102217.7074 107096.922 114040.2691 112843.1082 119135.1423 1.204890579 0.969237213 1.224859176 0.839824639 1.234373897 0.857997946 0.898953239 0.957234506 0.947185742 1 16.86223951 -6.283026539 24.81625982 0.927518878 1.080748775 0.312782349 0.119344645 930.3718565 1069537.284 0.039104866 0.034519518 5.21E-07 6.283026539 0.153229897 EYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_HeLa_A485_30min_R1 4 EYVSNDAAQSDDEEKLQSQPTDTDGGR 27 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR ;;; 347.34 7.15E-146 6334810000 1737260 1312910 1191340 3128730 2192670 1527820 2656440 2285630 1575090 4256640 TRUE FALSE FALSE 2123707.494 1466443.404 1632066.242 3299644.598 1974360.076 1607814.293 2088869.893 1725075.659 1891196.115 3195537.986 0.664585276 0.458903449 0.510732856 1.032578743 0.61784904 0.50314354 0.653683324 0.539838884 0.591824013 1 21.60762741 -10.11968869 4.57380465 1.000034701 0.618710212 0.359852457 0.152352244 214169054.5 4.814238304 80934.13772 0.038243288 7.59E-11 10.11968869 -0.381324489 EYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_HeLa_A486_30min_R1 3 EYVSNDAAQSDDEEKLQSQPTDTDGGR 27 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 EYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;EYVSNDAAQS(0.999)DDEEKLQS(0.001)QPTDTDGGR;EYVSNDAAQS(0.965)DDEEKLQS(0.034)QPT(0.001)DTDGGR ;; 335.3 7.65E-127 6028800000 1496880 1730170 929900 1117660 1840850 1999010 2561350 2458810 1503520 2940900 TRUE FALSE FALSE 1391956.442 1593065.028 1289982.184 2601968.963 1609953.428 1752392.471 1920473.139 1898992.638 1633846.324 2204479.498 0.631421813 0.722649056 0.585164065 1.180309894 0.730310003 0.79492346 0.871168519 0.861424495 0.741148342 1 21.07200663 FAAFFGNVPIFHIPGR ddPTM_HeLa_A485_30min_R1 2 FAAFFGNVPIFHIPGR 16 0 Q92620;J3KTG2 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 0 ; ; 217.46 9.86E-25 94014000 57158 71751 76775 68449 98300 54632 82202 69831 59619 93051 FALSE FALSE TRUE 69872.59991 80141.6553 105177.2674 72188.19555 88512.90685 57492.44704 64638.87117 52704.83776 71583.98644 69855.09818 1.000250543 1.147255639 1.505649124 1.033399099 1.267093013 0.823024354 0.925327898 0.754488064 1.024749636 1 16.09207779 -6.261625397 24.99964107 0.891411608 1.197069234 0.476310963 0.149089726 14.35942572 1929697.114 0.050339812 0.047215926 5.47E-07 6.261625397 0.305657626 FAAFFGNVPIFHIPGR ddPTM_HeLa_A486_30min_R1 2 FAAFFGNVPIFHIPGR 16 0 Q92620;J3KTG2 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 0 ; ; 248.64 9.09E-35 101787000 84418 92039 84072 32092 102710 88495 107078 104211 85116 103308 FALSE FALSE TRUE 78500.73413 84745.49444 116626.9299 74711.79784 89827.15407 77577.38665 80285.95184 80484.43021 92493.92341 77439.00438 1.01371053 1.09435155 1.506048933 0.964782521 1.159972998 1.001786984 1.036763741 1.039326769 1.194410028 1 16.24077278 FACHS(ph)ASLTVR ddPTM_HeLa_A485_30min_R1 3 FACHSASLTVR 11 0 Q15233-2;Q15233;C9IZL7;C9JYS8 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 1 0 FACHS(0.996)AS(0.004)LTVR;FACHS(0.897)AS(0.103)LTVR;FACHS(0.991)AS(0.009)LTVR ;; 177.1 3.33E-10 77698000 180965 254121 241096 157231 322614 227865 279953 312932 205045 232545 TRUE FALSE FALSE 221220.0399 283838.2404 330287.4432 165820.1314 290493.4174 239795.6591 220138.7545 236184.9363 246195.6507 174575.8112 1.267186092 1.625873817 1.891942767 0.949845974 1.663995805 1.373590404 1.260992305 1.352907569 1.410250647 1 17.41349415 -12.63126137 0.135272936 2.09E-13 1.617766297 0.23348395 0.24155233 132.1802017 1.585245721 38.52502902 1.754251089 2.34E-13 12.63126137 1.617766297 FACHSASLTVR ddPTM_HeLa_A485_30min_R1 2 FACHSASLTVR 11 0 Q15233-2;Q15233;C9IZL7;C9JYS8 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 ; ; 176.48 2.79E-09 143693000 168166 199317 215640 175094 263540 233630 290850 300990 190189 253510 FALSE FALSE TRUE 205573.9465 222625.3893 295414.2095 184658.9419 237301.0323 245862.5055 228707.5215 227171.7306 228358.1878 190314.6225 1.080179462 1.169775535 1.55224126 0.970282469 1.24688807 1.291873963 1.201733837 1.193664089 1.199898278 1 17.53802689 -8.888296667 0.911886021 0.997456843 1.220680494 0.167345972 0.14192905 9.255599043 7.999295258 0.204906738 0.044476368 1.29E-09 8.888296667 0.223223651 FACHSASLTVR ddPTM_HeLa_A486_30min_R1 2 FACHSASLTVR 11 0 Q15233-2;Q15233;C9IZL7;C9JYS8 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 ; ; 159.83 4.93E-06 116696000 97620 109029 112817 23770.5 141162 114855 142414 130505 115079 123684 FALSE FALSE TRUE 90777.34211 100389.145 156502.7637 55338.92529 123456.1457 100685.3579 106780.5109 100791.8604 125054.1404 92712.72135 0.979124987 1.082797954 1.688039801 0.596885999 1.33159877 1.085992908 1.151735267 1.087141645 1.348834751 1 16.50047969 FADLSEAANR ddPTM_HeLa_A485_30min_R1 2 FADLSEAANR 10 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 236.44 1.53E-26 131907000 240110 236324 296190 287310 413770 269000 361480 306530 290570 460260 FALSE FALSE TRUE 293521.6411 263960.0361 405763.0065 303005.0178 372573.606 283084.424 284246.845 231353.0369 348884.7337 345525.6525 0.849493052 0.763937595 1.174335403 0.876939283 1.078280595 0.819286273 0.822650483 0.669568338 1.009721655 1 18.3984333 FADLSEAANR ddPTM_HeLa_A486_30min_R1 3 FADLSEAANR 10 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ;; ;; 168.74 6.01E-09 0 398940 421230 331498 148774 734630 420670 434730 432370 348326 367252 FALSE FALSE TRUE 370976.3661 387850.2007 459862.9034 346353.3906 642485.8552 368772.0125 325955.9559 333928.7896 378519.1781 275289.7088 1.347585305 1.40888013 1.670468923 1.25814144 2.333853518 1.339577909 1.184047008 1.213008619 1.374984847 1 18.07059115 -6.509399099 24.97251206 1.218053837 1.60338548 0.312167802 0.288773265 836.2442108 1549238.721 0.104172337 0.087924637 3.09E-07 6.509399099 0.385331643 FADQDDIGNVS(ph)FDR ddPTM_HeLa_A486_30min_R1 2 FADQDDIGNVSFDR 14 0 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 FADQDDIGNVS(1)FDR;FADQDDIGNVS(1)FDR ; 233.37 1.46E-31 108280000 101973 129565 89119 29713 92752 106981 110952 106011 99092 114181 TRUE FALSE FALSE 94825.21929 119297.7975 123628.2635 69173.36561 81118.17928 93782.77192 83190.63607 81874.6095 107681.3743 85589.33441 1.107909297 1.393839529 1.444435388 0.808200766 0.94776037 1.095729656 0.971974331 0.956598273 1.25811674 1 16.38514341 -5.253218895 24.99872936 1.003633458 1.323239221 0.52291601 0.135582798 482.1839133 1466332.028 0.037049783 0.062815623 5.58E-06 5.253218895 0.319605763 FADQHVPGS(ph)PFSVK ddPTM_HeLa_A485_30min_R1 2 FADQHVPGSPFSVK 14 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 FADQHVPGS(1)PFSVK;FADQHVPGS(0.999)PFS(0.001)VK ; 124.77 2.19E-05 1253770000 2279560 2253300 1560860 2552600 3021700 2270700 3520000 3436800 2181190 3598700 TRUE FALSE FALSE 2786640.258 2516803.834 2138287.067 2692042.074 2720848.938 2389590.341 2767923.244 2593919.411 2618934.826 2701610.319 1.031473798 0.931593952 0.791486119 0.996458318 1.007121167 0.884505927 1.024545703 0.960138253 0.969397699 1 21.36538816 FADQHVPGS(ph)PFSVK ddPTM_HeLa_A486_30min_R1 3 FADQHVPGSPFSVK 14 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 FADQHVPGS(0.993)PFS(0.007)VK;FADQHVPGS(0.997)PFS(0.003)VK;FADQHVPGS(0.996)PFS(0.004)VK ;; 111.95 0.00017725 1469310000 1850868 1904045 1152596 823630 2002974 2055819 2600880 2519510 1460289 2153315 TRUE FALSE FALSE 1721131.711 1753161.54 1598912.039 1917452.264 1751742.324 1802192.954 1950112.315 1945872.574 1586868.026 1614110.908 1.066303252 1.086146888 0.990583751 1.187930925 1.085267632 1.11652362 1.208165006 1.205538333 0.983122051 1 20.62230828 -5.2599873 24.99986573 1.123964053 1.05152486 0.115524277 0.077280763 251.5121426 4330147.304 0.020872825 0.033890049 5.50E-06 5.2599873 -0.072439193 FAELPEFRPEEVLPS(ph)PT(ph)LQSLATSPR ddPTM_HeLa_A485_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 FAELPEFRPEEVLPS(0.992)PT(0.578)LQS(0.32)LAT(0.057)S(0.053)PR 64.532 0.014824 110960000 47008 65007 54292 43950 63747 57669 66767 61030 40985 52259 TRUE FALSE FALSE 57464.76742 72609.00316 74376.87008 46350.87721 57400.12485 60688.45967 52501.68501 46062.29681 49210.31356 39231.79306 1.464749963 1.850769427 1.895831526 1.181462115 1.463102254 1.546920366 1.338243321 1.174106336 1.254347806 1 15.25973565 -6.561695713 0.325026029 0.981166302 1.814630511 0.552882748 0.184307959 1.416282134 0.357983732 0.257722619 0.426626517 2.74E-07 6.561695713 0.833464208 FAELPEFRPEEVLPS(ph)PTLQS(ph)LATSPR ddPTM_HeLa_A485_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 FAELPEFRPEEVLPS(0.973)PT(0.092)LQS(0.357)LAT(0.298)S(0.28)PR 56.709 0.032943 28951000 22951 29990 29946 25034 33639 27316 32715 30055 19224 23936 TRUE FALSE FALSE 28056.37077 33497.06962 41024.27156 26401.54403 30289.78305 28746.22352 25725.17299 22683.96413 23082.08047 17969.19571 1.561359296 1.864138505 2.283033265 1.469266875 1.685650462 1.599750149 1.43162629 1.262380604 1.284536094 1 14.13323822 -6.962190668 0.555609777 1.027233699 1.876238232 0.642908082 0.20113527 0.54196689 0.350473701 0.197636662 0.139972786 1.09E-07 6.962190668 0.849004533 FAELPEFRPEEVLPS(ph)PTLQSLAT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 FAELPEFRPEEVLPS(0.998)PT(0.003)LQS(0.189)LAT(0.434)S(0.377)PR 107.29 0.00044388 123930000 104420 121820 112300 99423 131130 116960 138630 136480 74150 105330 TRUE FALSE FALSE 127647.8688 136065.7893 153844.4432 104854.2267 118074.2368 123083.8447 109010.568 103008.066 89031.22486 79073.16945 1.614300649 1.720758005 1.945596013 1.32604052 1.493227571 1.556581652 1.378603751 1.302693021 1.125934694 1 16.27090063 -6.967801928 0.388927358 0.966667548 1.778183606 0.730560047 0.138185204 0.651802224 0.252693062 0.168944666 0.178519247 1.08E-07 6.967801928 0.811516057 FAELPEFRPEEVLPS(ph)PTLQSLAT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 FAELPEFRPEEVLPS(0.992)PT(0.009)LQS(0.055)LAT(0.508)S(0.436)PR 105.71 0.00048807 122570000 135810 131930 92957 42812 143060 114410 128240 131930 126360 156610 TRUE FALSE FALSE 126290.4203 121475.3863 128952.4399 99668.4996 125116.0808 100295.2574 96152.99562 101892.419 137312.9865 117393.8366 1.075784078 1.034768007 1.098460052 0.849009645 1.065780661 0.854348578 0.819063405 0.867953735 1.169677987 1 16.84099714 -5.245437503 24.94452114 0.936860348 1.06618045 0.220509026 0.104920088 1192.966336 1859652.371 0.028553565 0.04925489 5.68E-06 5.245437503 0.129320102 FAELPEFRPEEVLPS(ph)PTLQSLATS(ph)PR ddPTM_HeLa_A485_30min_R1 2 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 FAELPEFRPEEVLPS(0.997)PT(0.003)LQSLAT(0.249)S(0.751)PR;FAELPEFRPEEVLPS(1)PTLQSLAT(0.242)S(0.757)PR ; 188.49 2.55E-20 973510000 333860 420430 407630 310760 445810 372860 431060 426710 278820 357130 TRUE FALSE FALSE 408126.0052 469595.6312 558429.2999 327736.0319 401423.5911 392382.373 338960.5096 322058.7034 334776.6165 268104.0635 1.522267137 1.751542387 2.082882641 1.22242098 1.497267836 1.463545043 1.264287102 1.201245141 1.248681621 1 18.03243356 -6.355696059 0.453117741 1.045996822 1.804960265 0.571571049 0.194638057 0.885582755 0.387044785 0.195279197 0.265084071 4.41E-07 6.355696059 0.758963443 FAELPEFRPEEVLPS(ph)PTLQSLATS(ph)PR ddPTM_HeLa_A486_30min_R1 3 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 FAELPEFRPEEVLPS(0.999)PT(0.002)LQS(0.304)LAT(0.129)S(0.566)PR;FAELPEFRPEEVLPS(0.999)PT(0.001)LQSLAT(0.093)S(0.907)PR;FAELPEFRPEEVLPS(1)PTLQSLAT(0.264)S(0.736)PR ;; 239.6 2.28E-49 1032300000 805690 753300 586160 220515 848030 692620 767590 749490 706760 814070 TRUE FALSE FALSE 749215.2916 693605.7645 813136.8499 513370.0642 741662.1698 607171.5864 575530.8633 578847.4883 768022.5259 610221.5733 1.227775818 1.136645761 1.332527209 0.841284685 1.215398148 0.995001837 0.943150633 0.948585749 1.258596155 1 19.21897366 -5.246470844 24.99487474 1.029507824 1.222749203 0.354150171 0.125706907 931.9784549 1556240.794 0.03293944 0.056747074 5.67E-06 5.246470844 0.193241379 FAELPEFRPEEVLPS(ph)PTLQSLATSPR ddPTM_HeLa_A485_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 1 0 FAELPEFRPEEVLPS(0.987)PT(0.009)LQS(0.001)LAT(0.002)S(0.002)PR 122.32 1.45E-05 639090000 19089 26474 29462 25626 36541 31941 39797 51996 29278 41801 TRUE FALSE FALSE 23335.28219 29569.90401 40361.21982 27025.88349 32902.84974 33613.38137 31294.04584 39243.89947 35153.82605 31380.77999 0.743617023 0.942293468 1.286176438 0.861224084 1.048503248 1.071145503 0.997236074 1.250571193 1.120234298 1 14.93759359 -4.453681025 4.303219471 1.078493809 0.765359655 0.437402232 0.11730259 0.204477398 6.998077836 0.029422318 0.128975934 3.52E-05 4.453681025 -0.313134155 FAELPEFRPEEVLPS(ph)PTLQSLATSPR ddPTM_HeLa_A486_30min_R1 2 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 1 0 FAELPEFRPEEVLPS(0.998)PT(0.001)LQSLATSPR;FAELPEFRPEEVLPS(0.978)PT(0.019)LQS(0.001)LAT(0.001)S(0.001)PR ; 126.64 4.18E-06 1707090000 93317 98921 86979 37782 114187 91926 114610 121077 91786 107883 TRUE FALSE FALSE 86775.96019 91082.1397 120659.5982 87958.4054 99864.60171 80585.10476 85933.36578 93510.41019 99742.08438 80868.3946 1.0730516 1.126300827 1.492048887 1.087673446 1.234902736 0.996496903 1.062632271 1.156328262 1.233387714 1 16.30328835 -6.232475966 24.66602774 1.09784347 1.208219768 0.161252358 0.127929878 1236.153359 1052742.095 0.043173087 0.04316441 5.85E-07 6.232475966 0.110376298 FAELPEFRPEEVLPSPTLQSLAT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 1 0 FAELPEFRPEEVLPSPTLQS(0.076)LAT(0.591)S(0.334)PR 223.53 3.79E-38 571060000 117150 195510 147920 154730 242690 192100 291490 327190 227700 251380 TRUE FALSE FALSE 143209.6133 218373.1938 202641.7635 163182.5081 218526.9315 202158.059 229210.7802 246946.1395 273397.3014 188715.5923 0.758864764 1.157155014 1.073794491 0.864700718 1.157969666 1.071231351 1.214583159 1.308562459 1.448726616 1 17.5258541 -6.554886277 1.334849687 1.281257349 0.994742259 0.359370267 0.153502323 0.455346418 1.652907012 0.082324928 0.057722137 2.79E-07 6.554886277 -0.28651509 FAELPEFRPEEVLPSPTLQSLAT(ph)SPR ddPTM_HeLa_A486_30min_R1 2 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 1 0 FAELPEFRPEEVLPS(0.003)PT(0.014)LQS(0.014)LAT(0.484)S(0.484)PR;FAELPEFRPEEVLPS(0.001)PT(0.008)LQS(0.076)LAT(0.507)S(0.409)PR ; 124.18 1.19E-05 126649000 22875 27584 21257 6035.5 32514 26915 29500 34439 24932 28669 TRUE FALSE FALSE 21271.58063 25398.14338 29488.27968 14050.94902 28435.79094 23594.50095 22118.78798 26597.9915 27093.12583 21490.0958 0.98983182 1.181853428 1.372180002 0.653833708 1.323204476 1.097924419 1.029254974 1.237686037 1.260726155 1 14.39138429 -7.269148291 24.63287255 1.18690456 1.098970943 0.024488225 0.197401874 1988.409703 6353665.282 0.102221772 0.050565014 5.38E-08 7.269148291 -0.087933617 FAFQAEVNR ddPTM_HeLa_A485_30min_R1 2 FAFQAEVNR 9 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 216.57 1.33E-16 164515000 97246 122335 112416 96220 148097 114778 145181 155764 98956 130040 FALSE FALSE TRUE 118878.0372 136641.0141 154003.3564 101476.255 133351.9427 120787.5986 114161.8933 117562.6348 118815.5615 97623.42121 1.217720458 1.399674508 1.577524681 1.039466285 1.365983091 1.237280942 1.169410905 1.204246208 1.217080492 1 16.57493969 -8.001782321 0.183221942 0.882953978 1.449142272 0.346499893 0.130428231 5.278705079 0.738861847 1.10630958 0.735761285 9.96E-09 8.001782321 0.566188294 FAFQAEVNR ddPTM_HeLa_A486_30min_R1 2 FAFQAEVNR 9 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 136.27 0.0010644 77902000 47104 46555 44711 19820.1 53459 48293 56598 51628 47161 53813 FALSE FALSE TRUE 43802.25285 42865.81225 62024.2966 46142.19445 46753.67373 42335.10067 42436.58177 39873.43143 51248.95345 40337.87454 1.085884007 1.062669086 1.537619354 1.143892557 1.159051494 1.049512429 1.052028206 0.988486178 1.270492163 1 15.29984745 -5.928927293 2.458852665 1.071644888 1.222220097 0.169043794 0.141995814 0.520803503 6.393977849 0.04991647 0.056964086 1.18E-06 5.928927293 0.150575209 FAFQY(ph)NPS(ph)LQPR ddPTM_HeLa_A485_30min_R1 1 FAFQYNPSLQPR 12 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 2 0 FAFQY(1)NPS(1)LQPR 68.44 0.023847 633940000 0 0 9408.6 0 12367 14350 15760 13219 8921.2 10214 TRUE FALSE FALSE 0 0 12889.23266 0 11135.69806 15101.34381 12392.74725 9977.019523 10711.60301 7667.837775 0 0 1.68094749 0 1.452260518 1.969439659 1.616198414 1.301151618 1.396952221 1 12.9046041 -5.805850779 11.45361697 1.505422445 0.480523075 0.487789044 0.51701403 0.602623726 153.5728018 0.162158301 0.184169751 1.56E-06 5.805850779 -1.02489937 FAFSPLS(ph)EEEEEDEQKEPMLK ddPTM_HeLa_A486_30min_R1 1 FAFSPLSEEEEEDEQKEPMLK 21 1 Q8NBN3-3;Q8NBN3 Q8NBN3-3 TMEM87A Transmembrane protein 87A 1 0 FAFSPLS(1)EEEEEDEQKEPMLK 329.12 1.73E-114 118600000 100500 74307 37438 43783 61502 108280 138680 111150 75503 194710 TRUE FALSE FALSE 93455.46898 68418.6427 51934.99622 101929.0367 53787.84568 94921.51451 103980.7972 85843.57139 82047.66083 145953.3487 0.64031055 0.468770627 0.355832851 0.698367236 0.368527657 0.650355168 0.712424882 0.588157601 0.562149903 1 17.15514779 -14 0.1907076 2.930929326 0.47736121 0.569675414 0.117028838 98.03021787 0.959560104 71.70272622 0.314018188 1.00E-14 14 -2.453568116 FAGGLHFS(ph)GPK ddPTM_HeLa_A485_30min_R1 2 FAGGLHFSGPK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FAGGLHFS(1)GPK;FAGGLHFS(1)GPK ; 87.18 0.0023331 959900000 1196540 1177450 791330 1831550 1251330 1039630 1618800 1474610 1018430 2280700 TRUE FALSE FALSE 1462706.195 1315142.535 1084075.897 1931602.939 1126743.192 1094063.419 1272930.156 1112959.585 1222819.559 1712163.463 0.85430289 0.768117393 0.633161448 1.128165026 0.658081553 0.638994724 0.743462983 0.65003115 0.714195569 1 20.70738901 -4.275337427 5.567151383 0.757668569 0.856977794 0.019345363 0.157866002 0.588106419 69.81415935 0.038787411 0.214149053 5.30E-05 4.275337427 0.099309224 FAGGLHFS(ph)GPK ddPTM_HeLa_A486_30min_R1 1 FAGGLHFSGPK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FAGGLHFS(1)GPK 79.466 0.0054883 442930000 440900 435260 250500 233070 364250 511310 587980 550670 355750 689300 TRUE FALSE FALSE 409995.1868 400768.4124 347500.3086 542598.7387 318562.3685 448229.7708 440861.185 425294.462 386586.6964 516694.7934 0.793495874 0.775638573 0.67254463 1.050133939 0.616538762 0.867494267 0.853233264 0.823105763 0.748191585 1 18.97895282 -11.3230611 2.209268209 2.025596159 0.801759386 0.22516511 0.111238236 9893411.961 1299637.029 50643887.27 0.026064177 4.75E-12 11.3230611 -1.223836773 FAHIDGDHLTLLNVYHAFK ddPTM_HeLa_A485_30min_R1 1 FAHIDGDHLTLLNVYHAFK 19 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 255.21 5.66E-47 15770000 37678 31595 28398 23147 37185 33954 39850 43814 28883 39127 FALSE FALSE TRUE 46059.34111 35289.76041 38903.60194 24411.462 33482.73084 35731.77894 31335.72196 33068.5478 34679.55317 29373.35898 1.568065169 1.201420663 1.324451928 0.831074921 1.139901326 1.216468943 1.066807578 1.12580069 1.18064649 1 14.84222063 -3.913220246 1.185234661 1.101179265 2.144056069 0.571804276 0.121127469 2.323941725 1.598656027 0.035935736 3.634379582 0.000122118 3.913220246 1.042876804 FAHIDGDHLTLLNVYHAFK ddPTM_HeLa_A486_30min_R1 2 FAHIDGDHLTLLNVYHAFK 19 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 ; ; 319.33 2.64E-87 39501000 58463 58306 45616 10163.7 70785 54670 66718 67815 53236 53908 FALSE FALSE TRUE 54365.0456 53685.62021 63279.73684 23661.60724 61906.48526 47925.37124 50024.45073 52375.00489 57850.53934 40409.08592 1.345366874 1.328553195 1.565977933 0.585551658 1.5319942 1.186004834 1.237950565 1.296119516 1.431622073 1 15.3023921 -11.01087321 3.05279815 0.706028092 1.272340425 0.094284102 0.258531855 83904478.19 1276004.819 173372903 0.061580625 9.75E-12 11.01087321 0.566312333 FAIGS(ph)AR ddPTM_HeLa_A485_30min_R1 2 FAIGSAR 7 0 O96017-13;O96017-4;O96017-12;O96017;O96017-9;B7ZBF2;A0A087X102;H0Y4V6;B7ZBF7;B7ZBF6;O96017-8;O96017-7 O96017-13 CHEK2 Serine/threonine-protein kinase Chk2 1 0 FAIGS(1)AR;FAIGS(1)AR ; 92.439 0.0047647 26525000 145208 170771 191888 165925 234433 164729 211411 199027 167678 212891 TRUE FALSE FALSE 177509.0186 190741.1829 262875.3563 174989.0626 211092.0274 173353.9557 166241.3128 150215.3162 201329.4366 159821.1917 1.110672601 1.193466154 1.644809137 1.094905255 1.320801235 1.084674403 1.04017065 0.939896109 1.259716778 1 17.28609919 -6.327401943 5.179265664 1.056698011 1.279271885 0.290380926 0.162455638 0.284774787 15.1225193 0.058011044 0.051306771 4.71E-07 6.327401943 0.222573874 FAIGS(ph)AR ddPTM_HeLa_A486_30min_R1 1 FAIGSAR 7 0 O96017-13;O96017-4;O96017-12;O96017;O96017-9;B7ZBF2;A0A087X102;H0Y4V6;B7ZBF7;B7ZBF6;O96017-8;O96017-7 O96017-13 CHEK2 Serine/threonine-protein kinase Chk2 1 0 FAIGS(1)AR 91.069 0.0065788 60606000 64270 90249 78307 34771 121260 98123 112950 112410 87788 107360 TRUE FALSE FALSE 59765.00489 83097.34056 108629.5675 80948.64523 106050.4401 86017.5819 84688.71534 86816.69689 95397.53452 80476.3572 0.742640534 1.032568365 1.349832066 1.005868656 1.317783804 1.068855312 1.052342803 1.078785123 1.185410695 1 16.29627738 -4.326095501 3.72955721 1.134827157 0.724294714 0.504460063 0.11549712 0.17420074 4.217200364 0.027762918 0.171624219 4.72E-05 4.326095501 -0.410532444 FAILKES(ph)PR ddPTM_HeLa_A485_30min_R1 1 FAILKESPR 9 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 FAILKES(1)PR 65.5 0.004571 0 88652 89282 77638 111090 149420 115030 152340 181740 95151 160030 TRUE FALSE FALSE 108372.3316 99722.75325 106359.527 117158.5654 134543.2202 121052.7929 119791.3145 137167.98 114246.9329 120137.4661 0.902069396 0.830072054 0.885315218 0.975204232 1.119910586 1.007618995 0.997118704 1.141758558 0.950968391 1 16.87432662 -5.369627458 3.145241208 1.040333664 0.866016641 0.618781297 0.057114428 0.153307926 2.880164607 0.016049834 0.02553003 4.27E-06 5.369627458 -0.174317023 FAILKES(ph)PR ddPTM_HeLa_A486_30min_R1 2 FAILKESPR 9 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 FAILKES(1)PR;FAILKES(1)PR ; 96.604 0.0012063 559860000 1050130 1000970 603050 446300 1100410 1082610 1258450 1308220 836650 1404690 TRUE FALSE FALSE 976521.3099 921649.4917 836567.1102 1039008.955 962386.3169 949048.5854 943572.4995 1010366.864 909171.4956 1052946.481 0.927417801 0.875305164 0.794501074 0.98676331 0.913993574 0.901326518 0.896125792 0.959561462 0.863454612 1 20.00600068 -14 0.180216559 1.39156061 0.882697545 0.246684368 0.050394345 193.2250416 1.86028146 27.16959898 0.157598961 1.00E-14 14 -0.508863065 FAIQDIS(ph)VEETSAK ddPTM_HeLa_A486_30min_R1 1 FAIQDISVEETSAK 14 0 O43707;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;A0A494C166;A0A494C033;G3V5M4;G3V2E8;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4;G3V2N5;G3V2X9 O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 1 0 FAIQDIS(1)VEETSAK 169.25 4.32E-12 347000000 578990 797550 458940 331430 819580 927680 1013000 1004400 580850 896870 TRUE FALSE FALSE 538405.7909 734349.2334 636653.8588 771585.7895 716780.6341 813232.2736 759536.6856 775720.0459 631198.5457 672287.9144 0.800855972 1.092313602 0.946995841 1.147701413 1.06618105 1.209648807 1.129778878 1.153850946 0.938881292 1 19.35871969 -3.588512736 1.140820265 1.096075617 1.15E-11 0.450395246 0.088263465 5.728249275 2.073495408 0.025889403 10.90125539 0.000257921 3.588512736 -1.096075617 FALITWIGENVSGLQR ddPTM_HeLa_A485_30min_R1 2 FALITWIGENVSGLQR 16 0 H3BT58;Q14019 H3BT58 COTL1 Coactosin-like protein 0 0 ; ; 259.48 2.60E-42 14389400 22653 23288 23342.9 21786.7 35296 20361.1 29953 25792 18377.1 30404 FALSE FALSE TRUE 27692.0817 26011.32902 31978.41009 22976.85225 31781.80631 21427.17571 23553.29686 19466.47156 22065.21541 22824.84234 1.213243066 1.139606076 1.401035311 1.006659845 1.392421723 0.938765552 1.031914985 0.852863352 0.966719291 1 14.47831727 -6.284554387 24.69848079 0.953472954 1.222566628 0.581896879 0.115377185 476.6189156 509267.4599 0.037980312 0.033516841 5.19E-07 6.284554387 0.269093674 FALITWIGENVSGLQR ddPTM_HeLa_A486_30min_R1 2 FALITWIGENVSGLQR 16 0 H3BT58;Q14019 H3BT58 COTL1 Coactosin-like protein 0 0 ; ; 213.73 5.52E-24 20639700 28920 34289 33254 15527 40573 34341 44282 40699 33116 36434 FALSE FALSE TRUE 26892.85734 31571.81476 46130.83937 36147.64069 35483.95601 30104.35657 33202.17523 31432.72615 35986.52154 27310.68925 0.984700792 1.156024093 1.689112968 1.323571161 1.299269882 1.102292084 1.215720882 1.150931266 1.317671671 1 14.7371781 -6.194674679 8.553981133 1.170507223 1.307397148 0.112833337 0.181901802 0.920239064 110.9297755 0.063126047 0.063107753 6.39E-07 6.194674679 0.136889924 FALKVDS(ph)PDVKR ddPTM_HeLa_A485_30min_R1 1 FALKVDSPDVKR 12 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 FALKVDS(1)PDVKR 79.771 0.0028379 455920000 185970 166790 89877 312630 241900 229550 391910 444630 149470 439250 TRUE FALSE FALSE 227338.3849 186294.6396 123126.2424 329708.1853 217815.5866 241568.883 308175.2269 335583.7953 179467.258 329753.0588 0.689420094 0.564951968 0.373389235 0.999863918 0.66054152 0.732575109 0.934563664 1.01768213 0.54424744 1 18.33102652 -5.262097834 24.99999952 0.833907656 0.544823588 0.405731188 0.1655183 60.56133649 2299412.286 0.045344821 0.072067911 5.47E-06 5.262097834 -0.289084067 FALKVDS(ph)PDVKR ddPTM_HeLa_A486_30min_R1 2 FALKVDSPDVKR 12 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 FALKVDS(1)PDVKR;FALKVDS(1)PDVKR ; 138.19 3.88E-06 1091530000 2237180 1697210 616500 1414150 1640380 2295000 3480700 3312800 1259830 4461500 TRUE FALSE FALSE 2080365.235 1562716.898 855225.3104 3292212.667 1434628.244 2011866.234 2609792.045 2558547.758 1369033.079 3344311.361 0.62206087 0.467276138 0.255725385 0.984421698 0.428975681 0.601578626 0.780367545 0.765044723 0.409361728 1 21.67327774 -14 0.139578472 2.339314437 0.453786136 0.262535956 0.203194318 190.193274 1.626478197 71.44271175 1.249888091 1.00E-14 14 -1.885528301 FALPSPQHILGLPVGQHIYLSAR ddPTM_HeLa_A486_30min_R1 2 FALPSPQHILGLPVGQHIYLSAR 23 0 B1AHF3;P00387-2;P00387;P00387-3 B1AHF3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 0 ; ; 158.77 1.31E-17 29360000 11744.9 16360.5 18970.8 6247.4 23489.9 16676.6 16931.4 17141.2 22095.4 14363.1 FALSE FALSE TRUE 10921.64316 15064.0344 26316.80182 14544.26293 20543.57771 14619.21065 12694.98464 13238.52295 24010.64706 10766.48627 1.014411098 1.399159764 2.444325953 1.350882968 1.908104203 1.357844173 1.179120496 1.229604777 2.230128424 1 13.39425987 -6.319141098 24.98499708 1.399926029 1.641391156 0.053743836 0.466982601 915.0097845 396198.6078 0.165318995 0.145797687 4.80E-07 6.319141098 0.241465126 FALVT(ph)PK ddPTM_HeLa_A485_30min_R1 4 FALVTPK 7 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FALVT(1)PK;FALVT(1)PK;FALVT(1)PK;FALVT(1)PK ;;; 126.07 0.008446 2084460000 3349220 2912830 2076260 4834740 4018740 3334470 5030550 4473210 2393150 6177530 TRUE FALSE FALSE 4094242.434 3253460.13 2844354.974 5098849.604 3618620.135 3509057.693 3955731.897 3376148.234 2873433.254 4637585.46 0.882839242 0.701541817 0.613326697 1.099462133 0.780281068 0.756656179 0.852972291 0.727996985 0.619596831 1 22.14494244 -11.41217982 2.217446777 2.776730245 0.783419326 0.191666032 0.134490148 19568935.53 1667870.309 174772992.3 0.034058907 3.87E-12 11.41217982 -1.99331092 FALVT(ph)PK ddPTM_HeLa_A486_30min_R1 3 FALVTPK 7 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FALVT(1)PK;FALVT(1)PK;FALVT(1)PK ;; 105.4 0.016737 2436120000 5859120 5338650 2643660 3074610 4806300 6141260 7777600 7372800 4151570 9237200 TRUE FALSE FALSE 5448425.945 4915595.931 3667355.952 7157847.462 4203449.037 5383613.781 5831562.217 5694174.387 4511431.43 6924144.996 0.786873462 0.709920999 0.52964748 1.033751816 0.607071204 0.777513149 0.842206831 0.822364984 0.651550687 1 22.72320451 -14 0.264255367 2.61150157 0.734749305 0.23058024 0.133705517 300.305834 2.941750137 263.6761825 0.16765757 1.00E-14 14 -1.876752265 FANYIDK ddPTM_HeLa_A485_30min_R1 2 FANYIDK 7 0 P08670;B0YJC4;A0A1B0GTT5 P08670 VIM Vimentin 0 0 ; ; 110.81 0.019727 100555000 111460 120640 99598 122344 139799 119954 153520 142706 102967 180283 FALSE FALSE TRUE 136253.8925 134747.7986 136443.4448 129027.3429 125880.1207 126234.606 120719.1979 107707.1297 123631.5324 135341.766 1.006739431 0.995611352 1.008139977 0.953344609 0.930090721 0.932709907 0.891958199 0.795815903 0.913476572 1 17.04624759 -5.798147681 1.073543376 0.888231418 1.006763621 0.417717149 0.048165691 0.43634926 1.074024675 0.02135605 0.031055456 1.59E-06 5.798147681 0.118532203 FAQFFLCPLFDESCKDR ddPTM_HeLa_A486_30min_R1 1 FAQFFLCPLFDESCKDR 17 1 A0A3B3ISG5;P14735;Q5T5N3 A0A3B3ISG5 IDE Insulin-degrading enzyme 0 0 67.605 0.018035 8168500 1964.9 2405.9 2387.5 1743 2338.6 2533.5 3657.8 3422 2651.3 4007.9 FALSE FALSE TRUE 1827.170657 2215.247722 3312.003939 4057.792086 2045.270981 2220.942529 2742.579752 2642.885302 2881.116819 3004.295753 0.608186013 0.737360068 1.102422735 1.350663323 0.68078217 0.739255623 0.912886073 0.879702106 0.958999065 1 11.55281113 -4.571707981 6.306473666 0.943822517 0.638078285 0.298245582 0.176425574 0.226835837 20.57045886 0.049114413 0.1358361 2.68E-05 4.571707981 -0.305744232 FAQK(ac)IGGSER ddPTM_HeLa_A486_30min_R1 2 FAQKIGGSER 10 1 P21291;E9PP21;E9PS42;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 1 ; FAQK(1)IGGSER;FAQK(1)IGGSER 166.07 2.86E-05 65000000 24039 27037.9 27488 10833.4 39175 30460 36792 38442 29048.8 36250 FALSE TRUE FALSE 22353.99024 24895.31833 38132.08975 25220.70269 34261.30621 26702.15489 27586.25245 29689.59578 31566.77337 27172.76405 0.822661625 0.916186454 1.403320239 0.928161104 1.260869382 0.982680851 1.015217017 1.092623324 1.16170638 1 14.72987371 -4.540028798 24.99781791 1.104426466 0.84604259 0.337627621 0.135104971 207.0820829 301841.2217 0.0322997 0.085498431 2.88E-05 4.540028798 -0.258383876 FAQSAPGS(ph)PLSSQPVLITVQR ddPTM_HeLa_A485_30min_R1 2 FAQSAPGSPLSSQPVLITVQR 21 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 FAQSAPGS(0.944)PLS(0.055)SQPVLITVQR;FAQSAPGS(0.998)PLS(0.002)SQPVLITVQR ; 249.51 5.60E-47 760170000 271194 362030 345220 300984 447110 319720 402430 433120 313281 377730 TRUE FALSE FALSE 331520.1697 404366.2593 472931.2438 317425.9938 402594.1585 336460.0448 316447.5429 326896.6409 376153.6231 283568.8626 1.169099339 1.425989636 1.667782702 1.119396505 1.419740358 1.186519711 1.115946018 1.152794555 1.326498332 1 18.1133396 -6.172554466 1.3773326 1.155343207 1.387590277 0.271580805 0.161265665 0.5813829 2.235743203 0.072737835 0.070704978 6.72E-07 6.172554466 0.23224707 FAQSAPGS(ph)PLSSQPVLITVQR ddPTM_HeLa_A486_30min_R1 4 FAQSAPGSPLSSQPVLITVQR 21 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 FAQSAPGS(0.996)PLS(0.003)S(0.001)QPVLITVQR;FAQSAPGS(0.995)PLS(0.005)SQPVLITVQR;FAQSAPGS(0.995)PLS(0.002)S(0.002)QPVLITVQR;FAQSAPGS(0.899)PLS(0.083)S(0.019)QPVLITVQR ;;; 252.41 7.16E-49 1570060000 933745 888625 705221 316984 1021140 795494 929775 920601 739531 964080 TRUE FALSE FALSE 868294.2974 818207.1187 978301.4577 737954.7715 893059.0994 697354.0383 697135.4608 711000.2489 803634.1425 722668.0929 1.201511878 1.132203188 1.353735508 1.021153111 1.235780448 0.964971396 0.964668937 0.983854491 1.11203767 1 19.46297367 -6.264015728 24.9873646 1.001570052 1.185569125 0.525410658 0.087267631 184.6675305 1791033.888 0.029184376 0.026897182 5.44E-07 6.264015728 0.183999072 FAQSAPGSPLS(ph)SQPVLITVQR ddPTM_HeLa_A485_30min_R1 1 FAQSAPGSPLSSQPVLITVQR 21 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 FAQSAPGS(0.414)PLS(0.521)S(0.065)QPVLITVQR 255.12 9.32E-59 684870000 309020 338900 338730 305760 426590 290660 413690 412900 299570 370710 TRUE FALSE FALSE 377760.4329 378531.407 464040.3227 322462.8946 384117.2018 305878.5082 325301.752 311635.6276 359690.9512 278298.8194 1.357391432 1.360161742 1.667417504 1.158693002 1.380232955 1.099100991 1.168893755 1.119787817 1.292463087 1 18.08627526 -5.806980038 1.388799832 1.148398949 1.436276664 0.461843638 0.133812783 0.375421509 1.513710264 0.050566766 0.067710226 1.56E-06 5.806980038 0.287877714 FARS(ph)DDEQSSADKER ddPTM_HeLa_A485_30min_R1 1 FARSDDEQSSADKER 15 2 A6NGV6;P27540-3;P27540-4;P27540 A6NGV6 ARNT Aryl hydrocarbon receptor nuclear translocator 1 0 FARS(1)DDEQSSADKER 98.816 0.00029879 414910000 175580 226610 180680 242650 302050 269750 347320 361280 219760 325050 TRUE FALSE FALSE 214637.1653 253110.0683 247521.0507 255905.3551 271976.8414 283873.6929 273112.2447 272675.5135 263863.8162 244021.0171 0.87958475 1.037247001 1.014343165 1.048702108 1.114563183 1.163316571 1.119216074 1.117426346 1.081315943 1 17.89664588 -3.07943531 0.668415685 1.105418726 8.27E-12 0.655012681 0.045394211 7.743881202 0.786020981 0.018955385 9.319211693 0.000832846 3.07943531 -1.105418726 FARS(ph)DDEQSSADKER ddPTM_HeLa_A486_30min_R1 5 FARSDDEQSSADKER 15 2 A6NGV6;P27540-3;P27540-4;P27540 A6NGV6 ARNT Aryl hydrocarbon receptor nuclear translocator 1 0 FARS(1)DDEQSSADKER;FARS(1)DDEQSSADKER;FARS(0.78)DDEQS(0.211)S(0.009)ADKER;FARS(0.656)DDEQS(0.132)S(0.213)ADKER;FARS(1)DDEQSSADKER ;;;; 188.19 2.37E-18 2663250000 1754710 1777670 1271120 1010729 2418510 2056620 2694810 2755740 1471250 2436480 TRUE FALSE FALSE 1631713.89 1636800.955 1763331.706 2353028.191 2115157.924 1802895.135 2020540.035 2128318.159 1598779.135 1826369.549 0.893419347 0.89620469 0.965484618 1.288363679 1.158121545 0.987146952 1.106315004 1.165327225 0.875386438 1 20.80054728 -5.013111725 24.00600244 1.092797758 0.903820081 0.340170871 0.107314414 383.0659546 701354.7587 0.02889459 0.053291453 9.70E-06 5.013111725 -0.188977677 FARSDDEQS(ph)SADKER ddPTM_HeLa_A485_30min_R1 1 FARSDDEQSSADKER 15 2 A6NGV6;P27540-3;P27540-4;P27540 A6NGV6 ARNT Aryl hydrocarbon receptor nuclear translocator 1 0 FARS(0.051)DDEQS(0.475)S(0.475)ADKER 114.53 0.00011742 532460000 283600 308430 232190 387170 428350 375990 586040 621550 288340 558560 TRUE FALSE FALSE 346685.8416 344498.2055 318086.7432 408320.1167 385701.97 395676.255 460827.7665 469113.8879 346207.1932 419321.2715 0.826778571 0.821561483 0.758575262 0.973764377 0.919824479 0.943611216 1.09898495 1.118745744 0.825637087 1 18.67769649 -5.578624942 1.251605039 1.00897038 0.80053447 0.467235869 0.084480528 0.399851549 1.290315275 0.032589141 0.057161832 2.64E-06 5.578624942 -0.20843591 FAS(ph)DDEHDEHDENGATGPVK ddPTM_HeLa_A485_30min_R1 6 FASDDEHDEHDENGATGPVK 20 0 P05455 P05455 SSB Lupus La protein 1 0 FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK ;;;;; 278.8 1.23E-72 29913920000 5097650 3112580 2914985 8942400 5180980 3408130 5880500 3921990 3833430 10415520 TRUE FALSE FALSE 6231604.656 3476569.155 3993359.254 9430900.669 4665143.44 3586574.417 4624083.136 2960115.803 4602764.239 7819122.547 0.796969816 0.44462395 0.510717057 1.206132864 0.596632603 0.458692698 0.591381336 0.378573911 0.588654828 1 22.89857529 -10.20823565 5.542194093 1.00001576 0.614820342 0.205387011 0.224585455 4.54E-05 6.49E-06 0.22590822 0.054788552 6.19E-11 10.20823565 -0.385195418 FAS(ph)DDEHDEHDENGATGPVK ddPTM_HeLa_A486_30min_R1 9 FASDDEHDEHDENGATGPVK 20 0 P05455 P05455 SSB Lupus La protein 1 0 FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK ;;;;;;;; 295.99 5.79E-87 44929740000 10345530 11611460 5623590 4711900 9416960 14003650 15889600 13750640 10480430 14858340 TRUE FALSE FALSE 9620361.771 10691325.62 7801194.653 10969541.33 8235797.067 12276022.04 11913854.02 10619919.45 11388882.11 11137714.95 0.863764409 0.959920923 0.700430446 0.984900527 0.739451234 1.102202929 1.069685664 0.953509718 1.022551049 1 23.40894994 -6.270108413 24.99885087 1.029190217 0.85503636 0.506154973 0.088768803 544.8580788 1571199.925 0.029747498 0.02664044 5.37E-07 6.270108413 -0.174153856 FAS(ph)DDEHDEHDENGATGPVKR ddPTM_HeLa_A485_30min_R1 9 FASDDEHDEHDENGATGPVKR 21 1 P05455 P05455 SSB Lupus La protein 1 0 FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(0.998)DDEHDEHDENGAT(0.002)GPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR ;;;;;;;; 204.31 1.19E-26 74583430000 8676658 7497010 5831420 11214965 10680110 8708630 13328130 12902480 7269420 15013860 TRUE FALSE FALSE 10606750.64 8373720.104 7988704.924 11827610.14 9616760.748 9164600.401 10480466.14 9738126.55 8728325.915 11271181.01 0.94105051 0.742931916 0.708772658 1.04936742 0.853216778 0.813100277 0.929846316 0.863984576 0.774393199 1 23.42613536 -11.52986876 2.232190027 3.244322063 0.852682675 0.172977235 0.096450684 6139632.561 435780.8446 70675162.72 0.024770316 2.95E-12 11.52986876 -2.391639389 FAS(ph)DDEHDEHDENGATGPVKR ddPTM_HeLa_A486_30min_R1 8 FASDDEHDEHDENGATGPVKR 21 1 P05455 P05455 SSB Lupus La protein 1 0 FAS(1)DDEHDEHDENGATGPVKR;FAS(0.999)DDEHDEHDENGAT(0.001)GPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR ;;;;;;; 246.31 9.70E-47 70790800000 30812570 28825690 14293425 14602696 28520660 31469720 40526540 39129790 21966790 41163340 TRUE FALSE FALSE 28652767.96 26541437.34 19828221.95 33995814.27 24943332.88 27587305.91 30386371.05 30220791.01 23870889.04 30855771.74 0.928603187 0.860177395 0.642609821 1.101765159 0.808384671 0.894072789 0.984787265 0.979421007 0.773628002 1 24.87903704 -5.261417418 25 0.928868428 0.815434874 0.20388238 0.111865814 3.477081461 3955826.69 0.030389614 0.048525389 5.48E-06 5.261417418 -0.113433554 FASDDEHDEHDENGAT(ph)GPVKR ddPTM_HeLa_A485_30min_R1 1 FASDDEHDEHDENGATGPVKR 21 1 P05455 P05455 SSB Lupus La protein 1 0 FAS(0.248)DDEHDEHDENGAT(0.752)GPVKR 124.81 1.50E-06 7491100000 82193 57990 58384 101840 91527 80600 111390 102730 70031 143130 TRUE FALSE FALSE 100476.5493 64771.42605 79982.67116 107403.2613 82414.25051 84820.09137 87590.61653 77535.30643 84085.57934 107450.3251 0.935097676 0.602803444 0.744368815 0.999561995 0.766998615 0.789388876 0.815173118 0.721592106 0.782553047 1 16.71331032 -10.48677766 2.704311074 1.008515078 0.791544116 0.258440724 0.103859132 18647473.88 19214561.25 1184434.393 0.026195037 3.26E-11 10.48677766 -0.216970962 FATAK(ac)R ddPTM_HeLa_A486_30min_R1 2 FATAKR 6 1 B0QZ88;Q9H7B4 B0QZ88 SMYD3 Histone-lysine N-methyltransferase SMYD3 0 1 ; FATAK(1)R;FATAK(1)R 69.383 0.014636 0 31308 33653 24976 14461.6 37035 33442 39536 38974 29441 40241 FALSE TRUE FALSE 29113.47087 30986.21372 34647.37608 33667.33565 32389.72496 29316.26605 29643.67463 30100.471 31992.96958 30164.39168 0.965160219 1.027244774 1.148618426 1.116128447 1.073773518 0.971883218 0.98273736 0.997880923 1.060620414 1 14.88055887 -6.246805542 24.05943158 1.001249003 1.071375997 0.277295644 0.050938374 668.2483024 1098663.689 0.018373868 0.018293584 5.66E-07 6.246805542 0.070126994 FATHAAALSVR ddPTM_HeLa_A485_30min_R1 2 FATHAAALSVR 11 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 118.9 0.00090191 88579000 53466 77577 71873 58856 90734 74583 90222 94338 64398 86561 FALSE FALSE TRUE 65359.32724 86648.95532 98461.81359 62071.15425 81700.20437 78488.05055 70945.33265 71201.45758 77322.08791 64982.93574 1.005792159 1.333410908 1.515194912 0.955191598 1.257256285 1.207825557 1.091753271 1.095694689 1.18988296 1 15.9877733 -7.545913256 0.35204959 0.998993101 1.255570808 0.134500885 0.152505504 2.506452872 0.988533449 0.238142416 0.189188877 2.85E-08 7.545913256 0.256577708 FATHAAALSVR ddPTM_HeLa_A486_30min_R1 2 FATHAAALSVR 11 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 115.29 0.0012022 61775000 55202 66351 54159 15322.3 77361 59308 76892 71709 58846 70081 FALSE FALSE TRUE 51332.62486 61093.10511 75130.81523 35671.08875 67657.66202 51991.18196 57652.80832 55382.4261 63946.81866 52532.26145 0.977163812 1.162963547 1.430184294 0.679032042 1.287925936 0.989700053 1.097474328 1.05425551 1.217286614 1 15.68091607 -6.837886254 0.007679323 3.84E-06 2.177712479 0.006926615 0.193630875 21167.75219 105.9593851 14861.12979 15174.32562 1.45E-07 6.837886254 2.17770864 FATLAELVQYYMEHHGQLK ddPTM_HeLa_A485_30min_R1 2 FATLAELVQYYMEHHGQLK 19 0 Q06124;Q06124-1;A0A1W2PPU4;Q06124-3 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 0 ; ; 210.75 6.08E-24 33216100 29652.8 30725.4 29295 36189.7 44110.3 31892.5 47150.7 40459.8 27828.6 48682.4 FALSE FALSE TRUE 36248.96306 34318.46825 40132.43957 38166.65167 39718.52365 33562.34198 37076.56776 30536.97061 33413.54476 36546.77361 0.991851249 0.939028671 1.098111696 1.044323422 1.086786048 0.918339395 1.014496332 0.83555859 0.914267977 1 15.15745643 -6.613355884 1.810610914 0.918226001 1.028690565 0.300369406 0.065703574 0.408856379 2.730031852 0.03232011 0.022748277 2.44E-07 6.613355884 0.110464564 FATLAELVQYYMEHHGQLK ddPTM_HeLa_A486_30min_R1 4 FATLAELVQYYMEHHGQLK 19 0 Q06124;Q06124-1;A0A1W2PPU4;Q06124-3 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 0 ;;; ;;; 203.19 4.98E-23 140227100 133623.5 139836.4 103434.5 68244.9 162036.6 150014.4 194939 175875 130299.5 181070 FALSE FALSE TRUE 124257.1827 128755.2544 143487.1085 158877.5761 141712.4587 131507.1486 146163.2003 135832.1018 141593.9656 135728.8934 0.915480702 0.948620821 1.057159643 1.170550883 1.044084683 0.968895754 1.076876092 1.000760401 1.04321167 1 17.05036834 -4.687974368 4.612632556 1.048096759 0.924755608 0.434524998 0.051955002 0.19202125 7.528338607 0.014224603 0.039774467 2.05E-05 4.687974368 -0.123341151 FAVGIVIGR ddPTM_HeLa_A485_30min_R1 2 FAVGIVIGR 9 0 Q96AE4;E9PEB5;Q96AE4-2;Q96I24;Q96I24-2 Q96AE4;Q96I24 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 0 0 ; ; 206.44 8.53E-12 170969000 208890 247480 202149 193818 282660 180673 269020 256550 153632 248160 FALSE FALSE TRUE 255356.8598 276420.6332 276932.3272 204405.7866 254517.3779 190132.7589 211541.6793 193630.7102 184464.5332 186298.279 1.370688238 1.483753015 1.486499653 1.097196322 1.366182121 1.020582476 1.135499911 1.039358556 0.990156936 1 17.50725482 -5.808177035 0.672407405 1.005089455 1.483718444 0.726553901 0.101411296 0.423403196 0.413666887 0.064548251 0.112776037 1.56E-06 5.808177035 0.478628989 FAVGIVIGR ddPTM_HeLa_A486_30min_R1 2 FAVGIVIGR 9 0 Q96AE4;E9PEB5;Q96AE4-2;Q96I24;Q96I24-2 Q96AE4;Q96I24 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 0 0 ; ; 174.64 2.27E-07 117287000 165369 131240 105974 66241 142668 123160 155955 141377 98956 168405 FALSE FALSE TRUE 153777.4871 120840.0644 147009.9709 154212.3956 124773.2491 107965.7714 116933.4095 109188.5433 107533.5858 126235.2919 1.21818142 0.957260546 1.164571086 1.221626641 0.988418114 0.855274066 0.926313139 0.864960517 0.851850415 1 16.94575578 -5.969715394 5.228294558 0.895127019 1.128332789 0.667200646 0.079954725 0.112950223 8.171027262 0.02525151 0.028150235 1.07E-06 5.969715394 0.23320577 FCADHPFLFFIQHSK ddPTM_HeLa_A485_30min_R1 2 FCADHPFLFFIQHSK 15 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237 A0A2R8YD12 SERPINB6 Serpin B6 0 0 ; ; 198.78 3.65E-16 37898000 47538 56052 52792 55839 83440 61588 82467 83319 52756 81673 FALSE FALSE TRUE 58112.6641 62606.79381 72321.95766 58889.34318 75132.42062 64812.65245 64847.25176 62884.88461 63343.64529 61313.42418 0.947796749 1.021094396 1.17954524 0.960464107 1.225382885 1.05707116 1.057635463 1.025629957 1.03311218 1 15.90391536 -7.234958514 2.166371743 1.018089293 1.070334372 0.058923096 0.081349108 1.043148691 9.290266168 0.054980225 0.023549659 5.82E-08 7.234958514 0.052245079 FCADHPFLFFIQHSK ddPTM_HeLa_A486_30min_R1 2 FCADHPFLFFIQHSK 15 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237 A0A2R8YD12 SERPINB6 Serpin B6 0 0 ; ; 234.66 6.34E-31 28342000 62452 62792 49391 25888 73029 66318 82978 79119 58957 77662 FALSE FALSE TRUE 58074.4373 57816.13324 68516.51794 60268.57231 63869.02185 58136.35943 62216.02675 61105.33086 64067.44023 58214.92971 0.99758666 0.993149584 1.17695784 1.035276906 1.097124435 0.998650342 1.068729741 1.049650513 1.100532811 1 15.82910157 FCDS(ph)PT(ph)SDLEMR ddPTM_HeLa_A486_30min_R1 1 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 2 0 FCDS(0.946)PT(0.67)S(0.384)DLEMR 96.059 0.0025422 0 237200 287240 225580 100880 330160 239130 282770 305230 228990 276410 TRUE FALSE FALSE 220573.5049 264478.0563 312930.6172 234853.7382 288748.2542 209628.5719 212017.9552 235735.7921 248839.0376 207195.1369 1.064568929 1.276468455 1.51031835 1.133490591 1.393605364 1.011744653 1.023276696 1.137747708 1.200988794 1 17.66063062 -6.269245705 24.98924649 1.08014362 1.280868471 0.377291276 0.128894926 675.2673375 2161627.751 0.045303984 0.040683881 5.38E-07 6.269245705 0.200724851 FCDS(ph)PTSDLEMR ddPTM_HeLa_A485_30min_R1 4 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 FCDS(0.929)PT(0.064)S(0.007)DLEMR;FCDS(0.498)PT(0.498)S(0.004)DLEMR;FCDS(0.927)PT(0.067)S(0.006)DLEMR;FCDS(0.803)PT(0.182)S(0.016)DLEMR ;;; 258.65 2.40E-33 1233310000 681170 831890 895490 760330 1093130 804080 974920 1001160 801410 946390 TRUE FALSE FALSE 832693.9165 929172.299 1226769.015 801864.9026 984294.139 846180.3855 766620.3776 755623.9402 962245.636 710472.39 1.172028538 1.307823234 1.726694848 1.128636262 1.385408009 1.191010935 1.079029092 1.06355145 1.354374427 1 19.43841906 -6.39221685 3.756527538 1.129527829 1.351591447 0.266370093 0.173381122 0.345642763 8.656853418 0.06448382 0.055821427 4.05E-07 6.39221685 0.222063618 FCDS(ph)PTSDLEMR ddPTM_HeLa_A486_30min_R1 3 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 FCDS(0.483)PT(0.483)S(0.034)DLEMR;FCDS(0.905)PT(0.081)S(0.014)DLEMR;FCDS(0.996)PT(0.004)SDLEMR ;; 205.02 3.39E-17 715670000 798380 965850 826760 323080 1072460 902880 1006280 998820 843550 988940 TRUE FALSE FALSE 742417.6848 889312.5284 1146903.613 752146.5676 937942.0665 791491.8454 754498.1007 771410.4901 916669.5932 741302.9871 1.001503701 1.199661331 1.547145544 1.014627731 1.265261415 1.06770357 1.017799893 1.040614301 1.236565357 1 19.4997038 -6.274601279 23.0291005 1.07165394 1.21366854 0.157653938 0.15326627 521.833119 913035.2935 0.054223273 0.048174988 5.31E-07 6.274601279 0.1420146 FCDSPT(ph)SDLEMR ddPTM_HeLa_A486_30min_R1 1 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 FCDS(0.415)PT(0.584)S(0.001)DLEMR 338.34 9.04E-73 335270000 275260 312620 247720 92301 340250 271930 302960 338880 243880 286170 TRUE FALSE FALSE 255965.6954 287846.8527 343643.8182 214881.3926 297572.6723 238382.0414 227156.2036 261724.4217 265019.7148 214511.1693 1.193251131 1.341873496 1.601985665 1.001725893 1.387212951 1.111280322 1.058948139 1.220096942 1.235458814 1 17.71069324 -5.272969768 24.98539323 1.159237822 1.375320451 0.351412825 0.144794984 843.7047501 1828235.919 0.040238677 0.060243634 5.33E-06 5.272969768 0.21608263 FCEHK(ac)R ddPTM_HeLa_A486_30min_R1 1 FCEHKR 6 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 1 FCEHK(1)R 84.244 0.023021 0 5331 5104.8 5081.4 1509.4 5316.9 4893.9 5993.6 5408.1 3444.6 5966 FALSE TRUE FALSE 4957.324429 4700.277057 7049.054165 3513.959481 4650.004824 4290.140376 4493.937886 4176.793688 3743.180701 4472.074768 1.108506607 1.051028281 1.576237995 0.785755978 1.039786914 0.959317677 1.004888809 0.93397224 0.837012102 1 12.12672859 -5.290472955 24.99881322 0.942506957 1.225834927 0.473762798 0.148263808 624.2887955 537530.7202 0.040972137 0.060783419 5.12E-06 5.290472955 0.28332797 FCGLMVQLLHK ddPTM_HeLa_A486_30min_R1 1 FCGLMVQLLHK 11 0 A0A087WVM7;V9GYP5;A0A087WWQ2;Q92979 A0A087WVM7 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 0 0 110.14 0.0016297 13776000 14280 17609 11658 6269.5 15652 17938 19372 18231 13743 19255 FALSE FALSE TRUE 13279.04574 16213.59871 16172.28981 14595.71284 13688.78021 15724.99194 14524.9207 14080.19928 14934.25431 14433.42267 0.920020569 1.123337068 1.120475038 1.011244053 0.948408463 1.089484615 1.006339316 0.975527399 1.034699437 1 13.81712583 -5.469833498 24.98719593 1.008835484 1.062212896 0.094851522 0.062743666 679.5943427 320124.4817 0.017542645 0.02601974 3.39E-06 5.469833498 0.053377413 FCGVNETENEDNTNRDS(ph)PIFDYSPR ddPTM_HeLa_A485_30min_R1 3 FCGVNETENEDNTNRDSPIFDYSPR 25 1 F8W9J4;Q03001;Q03001-9 F8W9J4 DST Dystonin 1 0 FCGVNETENEDNTNRDS(1)PIFDYSPR;FCGVNETENEDNT(0.003)NRDS(0.997)PIFDYSPR;FCGVNETENEDNT(0.007)NRDS(0.993)PIFDYSPR ;; 246.53 1.06E-49 684090000 189266 249412 188691 161579 264696 205453 284282 255495 194897 278661 TRUE FALSE FALSE 231367.5687 278578.5638 258495.653 170405.6516 238341.9368 216210.2014 223542.8283 192834.4506 234011.0402 209195.9411 1.10598498 1.331663331 1.235662851 0.814574369 1.139323907 1.03352962 1.068581098 0.921788681 1.118621322 1 17.67449533 -5.197310392 23.78284923 1.018853325 1.235160544 0.46961639 0.102304114 103.489426 38379.40512 0.026186356 0.045356124 6.35E-06 5.197310392 0.216307219 FCGVNETENEDNTNRDS(ph)PIFDYSPR ddPTM_HeLa_A486_30min_R1 3 FCGVNETENEDNTNRDSPIFDYSPR 25 1 F8W9J4;Q03001;Q03001-9 F8W9J4 DST Dystonin 1 0 FCGVNETENEDNT(0.037)NRDS(0.962)PIFDYSPR;FCGVNETENEDNT(0.001)NRDS(0.999)PIFDYSPR;FCGVNETENEDNT(0.001)NRDS(0.999)PIFDYSPR ;; 223.56 1.68E-38 599340000 222642 274220 209664 85438 279818 213927 295668 257843 172775 248580 TRUE FALSE FALSE 207035.9455 252489.8085 290851.5158 198903.9818 244720.6172 187534.8618 221688.7391 199137.7776 187751.2761 186333.95 1.111101576 1.35503921 1.560915312 1.067459697 1.313344225 1.006444943 1.189738849 1.068714411 1.007606376 1 17.50753103 -6.061276762 1.121272939 1.053667461 1.3221576 0.381088593 0.139453432 0.520531458 1.379904236 0.067233899 0.073397444 8.68E-07 6.061276762 0.268490139 FCIWTESAFR ddPTM_HeLa_A485_30min_R1 4 FCIWTESAFR 10 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ;;; ;;; 283.57 3.19E-46 180537000 132679 156075 161996 155496 211503 154923 205389 215717 143705 203809 FALSE FALSE TRUE 162192.9858 174326.6136 221925.0616 163990.3527 190445.0187 163034.5287 161505.9623 162812.0675 172545.2754 153003.1671 1.060062931 1.139366046 1.450460574 1.071810184 1.244712918 1.065563098 1.055572674 1.064109133 1.127723554 1 17.22320199 -6.275151268 23.25657748 1.06616167 1.197826371 0.27419715 0.106105032 442.3444803 750251.8168 0.037428425 0.033219128 5.31E-07 6.275151268 0.131664701 FCIWTESAFR ddPTM_HeLa_A486_30min_R1 3 FCIWTESAFR 10 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ;; ;; 248.99 5.98E-35 134762000 107816 101704 106837 56209 145473 113724 135509 133184 106380 137975 FALSE FALSE TRUE 100258.6552 93644.60464 148207.1476 130857.3926 127226.4199 99693.88914 101603.2149 102860.9106 115601.1041 103425.1619 0.969383594 0.905433483 1.432989273 1.265237493 1.230130246 0.963922969 0.98238391 0.994544351 1.117727078 1 16.65822769 -6.265237357 24.88486431 1.009541447 1.167399029 0.210720458 0.143777773 547.1445968 3584957.151 0.054521324 0.049979105 5.43E-07 6.265237357 0.157857582 FCLFHSFFVTK ddPTM_HeLa_A485_30min_R1 1 FCLFHSFFVTK 11 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 157.38 5.74E-06 31846000 47211 53245 45962 59255 76812 41885 69034 63890 39428 82037 FALSE FALSE TRUE 57712.92407 59471.53958 62965.25644 62491.95061 69164.32758 44078.03383 54284.32194 48220.87732 47340.83794 61586.68568 0.937100664 0.965655789 1.022384234 1.014699036 1.123040261 0.715707191 0.881429506 0.782975684 0.768686242 1 15.91033087 -6.263019649 24.99793614 0.819425068 1.010632167 0.537805334 0.084458422 107.5207672 1700835.757 0.028023987 0.026000697 5.46E-07 6.263019649 0.191207099 FCLFHSFFVTK ddPTM_HeLa_A486_30min_R1 2 FCLFHSFFVTK 11 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 ; ; 184.71 1.43E-09 66118000 210940 221100 167378 97853 221570 200739 309890 241600 224460 302720 FALSE FALSE TRUE 196154.1953 203579.2308 232191.2441 227806.7292 193778.6245 175973.8631 232352.2443 186592.9541 243916.3735 226916.9416 0.86443169 0.89715307 1.023243317 1.003921204 0.85396279 0.775499008 1.023952829 0.822296267 1.074914776 1 17.7918048 -7.777020696 24.99995294 1.037457442 0.912370417 0.279379861 0.082897167 381.3554161 611860.3948 0.080203673 0.021005276 1.67E-08 7.777020696 -0.125087026 FCLSS(ph)PTEALK ddPTM_HeLa_A486_30min_R1 2 FCLSSPTEALK 11 0 E7EWD6;Q76L83;Q76L83-2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 FCLS(0.014)S(0.971)PT(0.014)EALK;FCLS(0.035)S(0.942)PT(0.022)EALK ; 156.36 1.54E-06 58861000 363730 382700 219130 142958 340820 371870 406400 376860 295380 457840 TRUE FALSE FALSE 338234.4053 352373.4582 303983.0045 332813.4487 298071.1776 325992.4603 304714.4215 291057.2048 320983.7762 343193.884 0.985549047 1.026747488 0.88574715 0.969753437 0.86852124 0.949878408 0.887878356 0.848083892 0.935284081 1 18.38866432 -4.759016996 24.99961242 0.912841248 1.006148289 0.366013408 0.045907251 57.03364264 588566.462 0.011218481 0.026918418 1.74E-05 4.759016996 0.093307041 FCQLLWRPRPPTLLSQEQIK ddPTM_HeLa_A485_30min_R1 1 FCQLLWRPRPPTLLSQEQIK 20 2 P55884-2;P55884 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 0 59.9 0.021952 19284000 11614 10510 13452 15032 18088 10925 17259 17534 13452 21302 FALSE FALSE TRUE 14197.49423 11739.05308 18428.45458 15853.1601 16287.09521 11497.01611 13571.47366 13233.75901 16151.69301 15991.80343 0.887798196 0.734066869 1.152368753 0.99133035 1.018465195 0.718931805 0.848651855 0.827533871 1.00999822 1 13.96504502 FCSNSGRLS(ph)GPAELR ddPTM_HeLa_A485_30min_R1 4 FCSNSGRLSGPAELR 15 1 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 0 FCS(0.001)NS(0.001)GRLS(0.998)GPAELR;FCSNSGRLS(1)GPAELR;FCS(0.002)NS(0.004)GRLS(0.994)GPAELR;FCSNSGRLS(1)GPAELR ;;; 141.6 4.94E-08 2462200000 2516130 2476370 1662310 3462600 2306630 2406550 3114040 3343480 2063460 5981800 TRUE FALSE FALSE 3075834.438 2765959.93 2277267.643 3651753.07 2076973.818 2532553.237 2448699.915 2523486.288 2477577.495 4490647.347 0.684942326 0.615937907 0.507113444 0.813190791 0.462511005 0.563961728 0.545288847 0.561942654 0.551719452 1 22.098492 -10.62399777 6.452347343 1.00154479 0.587934437 0.633747918 0.093583468 0.002029079 0.000118242 0.088408827 0.021373487 2.38E-11 10.62399777 -0.413610353 FCSNSGRLS(ph)GPAELR ddPTM_HeLa_A486_30min_R1 3 FCSNSGRLSGPAELR 15 1 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 0 FCSNSGRLS(1)GPAELR;FCS(0.006)NS(0.004)GRLS(0.99)GPAELR;FCSNSGRLS(1)GPAELR ;; 97.49 0.00014691 1134890000 1838150 1636030 1077600 679960 1821190 2055120 2565620 2256690 1602830 2894880 TRUE FALSE FALSE 1709305.177 1506385.024 1494875.579 1582981.243 1592759.368 1801580.189 1923674.74 1742890.95 1741764.595 2169983.205 0.787704335 0.69419202 0.688888087 0.72949009 0.733996173 0.830227711 0.886492916 0.803181769 0.802662707 1 21.04925245 -6.294876601 3.104630828 0.85719535 0.721064653 0.587933426 0.057860891 0.197468913 3.864877027 0.020865632 0.018952748 5.07E-07 6.294876601 -0.136130697 FCTGLTQIETLFK ddPTM_HeLa_A485_30min_R1 1 FCTGLTQIETLFK 13 0 P12277 P12277 CKB Creatine kinase B-type 0 0 107.85 0.0031793 0 2108.1 2143.1 1932.7 2357.9 3626 2848.7 2812.2 3772.9 1715.1 3527.7 FALSE FALSE TRUE 2577.039572 2393.716903 2647.686156 2486.706106 3264.982708 2997.853527 2211.350496 2847.590359 2059.304838 2648.309313 0.973088589 0.903866059 0.999764697 0.938978727 1.232855503 1.131987685 0.835004614 1.075248403 0.777592266 1 11.37085592 -6.765181796 24.99995904 0.928232045 1.028049484 0.167990343 0.117504339 210.5529163 1406504.534 0.049790849 0.035040541 1.72E-07 6.765181796 0.099817439 FDDPGLMLMGFKPLVLLK ddPTM_HeLa_A486_30min_R1 2 FDDPGLMLMGFKPLVLLK 18 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 76.85 0.0046399 37137000 81806 103569 60402 38071 99618 119411 132346 120771 105854 125871 FALSE FALSE TRUE 76071.82185 95361.81525 83791.27202 88631.212 87122.98154 104679.2849 99231.63099 93274.07971 115029.5099 94352.08232 0.806254827 1.010701756 0.888070194 0.939366783 0.923381651 1.109453892 1.051716386 0.988574681 1.219151789 1 16.52576674 -6.25095102 23.48190933 1.07168633 0.918970218 0.52408573 0.076241363 257.532714 576577.6611 0.023894768 0.023616671 5.61E-07 6.25095102 -0.152716112 FDFIYDLFEHVSSR ddPTM_HeLa_A485_30min_R1 1 FDFIYDLFEHVSSR 14 0 A0A0A0MQX1;Q9HD67;D6RGD1 A0A0A0MQX1 MYO10 Unconventional myosin-X 0 0 120.53 8.60E-05 2178500 4226.3 6327.6 7091.8 1810.5 7910.8 3334.9 5640.5 6002.3 5839 5011.9 FALSE FALSE TRUE 5166.425854 7067.557777 9715.351934 1909.403031 7123.172975 3509.510207 4435.361096 4530.226514 7010.833742 3762.525567 1.373127109 1.878407907 2.582135792 0.507479085 1.893189255 0.93275385 1.178825504 1.204038732 1.863331854 1 11.87748567 -5.256567252 24.99940919 1.247819263 1.937941968 0.324836237 0.474169338 498.4019849 2557345.972 0.125502719 0.208853641 5.54E-06 5.256567252 0.690122706 FDGSENRPFS(ph)PSPLNNISSTVTVK ddPTM_HeLa_A485_30min_R1 1 FDGSENRPFSPSPLNNISSTVTVK 24 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 FDGSENRPFS(0.978)PS(0.021)PLNNISSTVTVK 146.23 1.56E-09 394130000 80997 100040 70551 100070 127510 83335 124890 134410 111590 152280 TRUE FALSE FALSE 99014.50321 111738.8078 96650.75077 105536.5707 114814.6567 87698.29174 98206.23124 101445.7368 133985.0894 114319.3985 0.866121625 0.977426484 0.845444885 0.923172901 1.004332232 0.76713395 0.859051329 0.88738865 1.172024094 1 16.80271071 -7.745930632 24.99817272 1.08601202 0.892225898 0.523536434 0.074311973 157.4570261 253803.6793 0.049760238 0.018659261 1.80E-08 7.745930632 -0.193786121 FDGSENRPFS(ph)PSPLNNISSTVTVK ddPTM_HeLa_A486_30min_R1 2 FDGSENRPFSPSPLNNISSTVTVK 24 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 FDGS(0.036)ENRPFS(0.936)PS(0.028)PLNNISSTVTVK;FDGSENRPFS(0.996)PS(0.004)PLNNISSTVTVK ; 255.36 1.67E-61 490950000 238340 217070 134466 103950 189112 209015 254320 245180 170414 265230 TRUE FALSE FALSE 221633.5968 199868.5826 186534.8363 242000.8533 165391.8096 183228.8544 190686.4461 189357.8662 185185.6227 198814.6816 1.114774799 1.005300921 0.938234716 1.217218222 0.831889316 0.921606256 0.959116522 0.952434019 0.931448428 1 17.60106477 -5.780909822 24.99998436 0.931132055 1.055008796 0.413737509 0.078683345 260.2021259 334097.2349 0.02408142 0.027345022 1.66E-06 5.780909822 0.123876741 FDIYDPFHPTDEAYS(ph)PPPAPEQK ddPTM_HeLa_A485_30min_R1 4 FDIYDPFHPTDEAYSPPPAPEQK 23 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK ;;; 273.02 7.66E-75 6583480000 1618790 1588240 1194320 1993180 2118020 1687870 2647330 2682940 1554740 2818770 TRUE FALSE FALSE 1978884.251 1773970.852 1636148.668 2102062.376 1907142.492 1776244.263 2081706.319 2024944.758 1866762.057 2116102.515 0.935155191 0.838319902 0.7731897 0.993365095 0.90125241 0.839394241 0.983745496 0.956921862 0.882169954 1 21.01297809 -7.345198644 0.225340816 1.017076514 0.838180844 0.215624744 0.064483958 3.607287181 0.844690738 0.238767744 0.255254387 4.52E-08 7.345198644 -0.17889567 FDIYDPFHPTDEAYS(ph)PPPAPEQK ddPTM_HeLa_A486_30min_R1 8 FDIYDPFHPTDEAYSPPPAPEQK 23 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK;FDIYDPFHPTDEAYS(1)PPPAPEQK ;;;;;;; 298.97 2.24E-89 12284075000 5177848 5118901 2795595 1716142 4669150 4962351 6501304 6124932 4192298 6192494 TRUE FALSE FALSE 4814907.594 4713260.642 3878124.253 3995265.305 4083501.669 4350146.587 4874608.975 4730418.69 4555689.766 4641853.196 1.037281316 1.015383392 0.835468958 0.860704795 0.879713661 0.937157295 1.050142857 1.019079771 0.981437709 1 22.14626947 -6.65069557 6.155955473 1.01381459 0.920902093 0.314200544 0.061429091 0.279648549 14.1029397 0.026553965 0.020397699 2.24E-07 6.65069557 -0.092912496 FDLGQDVIDFTGHALALYR ddPTM_HeLa_A486_30min_R1 1 FDLGQDVIDFTGHALALYR 19 0 P50395-2;P50395;Q5SX91;Q5SX87;P31150 P50395-2 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 0 65.265 0.010262 1860700 4443.3 5633.2 4819.7 1505.9 7068.4 6458.7 7606.3 6485.9 6776.4 7196.6 FALSE FALSE TRUE 4131.847615 5186.804716 6686.016916 3505.811304 6181.815362 5661.891261 5703.123289 5009.202156 7363.783808 5394.524518 0.765933606 0.961494326 1.239408013 0.649883283 1.145942583 1.049562615 1.057205926 0.92857158 1.365047797 1 12.39728009 -4.344869728 3.836566271 1.04346261 0.758500503 0.187795574 0.179996599 0.372290034 9.144083064 0.043268755 0.244701328 4.52E-05 4.344869728 -0.284962107 FDLLWLIQDRPDR ddPTM_HeLa_A485_30min_R1 2 FDLLWLIQDRPDR 13 1 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 90.731 0.0068729 32920000 28699 39830 39072 27789 44080 24727 30440 25635 38264 39712 FALSE FALSE TRUE 35082.99354 44487.77203 53526.35872 29307.0427 39691.24043 26021.66748 23936.24533 19347.97606 45943.23382 29812.52925 1.176786889 1.492250847 1.795431655 0.983044493 1.331361056 0.872843336 0.802892137 0.648988078 1.541071321 1 14.86363116 -5.691947946 1.616787337 0.959652685 1.465964345 0.303004612 0.291229148 0.425075052 2.297017743 0.103203714 0.147927552 2.03E-06 5.691947946 0.506311659 FDLLWLIQDRPDR ddPTM_HeLa_A486_30min_R1 2 FDLLWLIQDRPDR 13 1 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 150.49 2.57E-05 0 29069 25921 20755 10424.7 27954 25281 27834 28657 22926 25992 FALSE FALSE TRUE 27031.41321 23866.92556 28791.89184 24269.22844 24447.74866 22162.08726 20869.6388 22132.42668 24913.24414 19483.43402 1.387404971 1.224985571 1.477762688 1.24563403 1.254796697 1.13748363 1.071147867 1.135961281 1.278688557 1 14.24996036 -5.924054992 1.704105904 1.12910174 1.346299033 0.54929825 0.091117957 0.287127016 1.708348952 0.033478647 0.039237185 1.19E-06 5.924054992 0.217197293 FDLSHGS(ph)PQMVR ddPTM_HeLa_A485_30min_R1 8 FDLSHGSPQMVR 12 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 FDLS(0.001)HGS(0.999)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLS(0.002)HGS(0.998)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR ;;;;;;; 197.88 4.17E-17 4885350000 2661420 3481090 3395420 3103290 4084950 3413450 4354150 4137200 3104120 4186030 TRUE FALSE FALSE 3253443.697 3888173.194 4651527.153 3272814.875 3678238.035 3592172.964 3423850.282 3122545.213 3727088.411 3142529.759 1.035294475 1.2372749 1.480185554 1.041458674 1.170470391 1.143083197 1.089520401 0.993640618 1.186015312 1 21.58349498 -6.040178831 1.136644357 1.070683523 1.229825003 0.190308867 0.124824626 0.793965081 2.161813411 0.060488006 0.067272901 9.12E-07 6.040178831 0.159141481 FDLSHGS(ph)PQMVR ddPTM_HeLa_A486_30min_R1 8 FDLSHGSPQMVR 12 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLS(0.001)HGS(0.999)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR;FDLSHGS(1)PQMVR ;;;;;;; 199.58 3.77E-17 4221110000 4805170 4957240 3783530 1391917 5255200 4382860 4961700 5109060 4403010 5668060 TRUE FALSE FALSE 4468352.397 4564410.248 5248614.142 3240453.12 4596043.813 3842147.295 3720230.18 3945838.568 4784666.452 4248740.883 1.051688611 1.074297156 1.235334017 0.762685513 1.081742554 0.904302569 0.875607688 0.928707746 1.126137504 1 22.01860393 -5.245916125 24.97178048 0.951162959 1.115825634 0.336731332 0.106819998 929.8030033 1495743.594 0.028173943 0.048573837 5.68E-06 5.245916125 0.164662675 FDPFGPIGT(ph)SPPGPNPDHLPPPGYDDMYL ddPTM_HeLa_A485_30min_R1 4 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 0 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 FDPFGPIGT(0.5)S(0.5)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.5)S(0.5)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.531)S(0.469)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.5)S(0.5)PPGPNPDHLPPPGYDDMYL ;;; 80.847 0.0052093 293113000 74603 78259 81508 68066.1 96612 101172 117375 126987 62755.4 95719 TRUE FALSE FALSE 91198.17997 87410.70929 111661.201 71784.37869 86992.97005 106469.2095 92296.87238 95843.23914 75349.83315 71858.01488 1.269144161 1.216436461 1.553914358 0.998975254 1.210623063 1.481660879 1.284433929 1.333786347 1.048593303 1 16.13286146 -7.818937082 5.514273493 1.009734442 1.293112675 0.36116172 0.143493307 0.223300664 13.30206753 0.134993169 0.035913824 1.52E-08 7.818937082 0.283378233 FDPFGPIGT(ph)SPPGPNPDHLPPPGYDDMYL ddPTM_HeLa_A486_30min_R1 3 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 0 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 FDPFGPIGT(0.534)S(0.466)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.546)S(0.454)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.55)S(0.45)PPGPNPDHLPPPGYDDMYL ;; 145.06 4.36E-09 194788000 93963 143942 131991 46205.4 168090 137173 148481 145574 119213 137802 TRUE FALSE FALSE 87376.67893 132535.5117 183101.45 107568.5063 147006.5848 120249.9899 111329.4833 112429.9781 129546.4788 103295.4823 0.845890614 1.283071716 1.772598821 1.041366998 1.423165676 1.164136004 1.077776887 1.088430739 1.254134992 1 16.65641763 -6.502630056 19.45099414 1.113669078 1.289131363 0.10275693 0.233274258 103.7886576 99701.62785 0.083838895 0.072572332 3.14E-07 6.502630056 0.175462284 FDPFGPIGT(ph)SPPGPRPDR ddPTM_HeLa_A486_30min_R1 2 FDPFGPIGTSPPGPRPDR 18 1 Q5QPM7 Q5QPM7 PSMF1 1 0 FDPFGPIGT(0.572)S(0.428)PPGPRPDR;FDPFGPIGT(0.5)S(0.5)PPGPRPDR ; 89.028 0.00095927 191271000 103922 105326 88838 31951 131302 90881 108649 101844 92995 110177 TRUE FALSE FALSE 96637.60445 96979.58417 123238.4528 74383.54271 114832.8788 79669.02623 81463.87103 78656.34444 101055.8815 82587.96207 1.170117315 1.174258109 1.492208425 0.900658411 1.390431195 0.964656643 0.986389166 0.952394786 1.223615149 1 16.33364389 -6.284451807 24.99096684 1.019996938 1.219452536 0.27708456 0.161356139 1071.323119 1163428.169 0.054446337 0.048047336 5.19E-07 6.284451807 0.199455598 FDPFGPIGTS(ph)PPGPNPDHLPPPGYDDMYL ddPTM_HeLa_A485_30min_R1 1 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 0 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 FDPFGPIGT(0.238)S(0.762)PPGPNPDHLPPPGYDDMYL 208.3 5.27E-29 56261000 51452 57506 58376 52379 66203 67100 81587 93178 44021 63701 TRUE FALSE FALSE 62897.31989 64230.82646 79971.71163 55240.33214 59611.59687 70613.25224 64155.27095 70325.9494 52855.61092 47821.51303 1.315251566 1.343136643 1.672295721 1.1551356 1.246543513 1.476600128 1.341556694 1.470592312 1.105268478 1 15.54537216 -7.899832361 4.779641603 1.004115089 1.375891835 0.491118672 0.134005284 0.162705823 5.711179595 0.129164576 0.033801548 1.26E-08 7.899832361 0.371776746 FDPFGPIGTS(ph)PPGPNPDHLPPPGYDDMYL ddPTM_HeLa_A486_30min_R1 2 FDPFGPIGTSPPGPNPDHLPPPGYDDMYL 29 0 Q92530 Q92530 PSMF1 Proteasome inhibitor PI31 subunit 1 0 FDPFGPIGT(0.263)S(0.737)PPGPNPDHLPPPGYDDMYL;FDPFGPIGT(0.191)S(0.809)PPGPNPDHLPPPGYDDMYL ; 133.94 1.90E-06 144582000 89362 136927 117181 47243 172141 125591 145469 148197 131111 138050 TRUE FALSE FALSE 83098.18527 126076.4058 162556.6214 109984.0915 150549.4706 110096.8593 109071.1176 114455.7782 142475.807 103481.3814 0.803025473 1.218348693 1.57087796 1.062839421 1.454845969 1.063929161 1.05401683 1.106051897 1.376825522 1 16.65901169 FDPLLRDS(ph)PGRPVPVATETSSMHGANETPSGRPR ddPTM_HeLa_A485_30min_R1 2 FDPLLRDSPGRPVPVATETSSMHGANETPSGRPR 34 3 A0A494BZT8;Q9Y6A5;A0A494C117 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 FDPLLRDS(1)PGRPVPVATETSSMHGANETPSGRPR;FDPLLRDS(1)PGRPVPVATETSSMHGANETPSGRPR ; 156.04 5.58E-10 1953400000 180707 322540 340250 102541 427250 227544 253672 305390 264874 199233 TRUE FALSE FALSE 220904.6487 360258.2473 466122.634 108142.5552 384711.4898 239457.852 199472.9049 230492.6237 318031.7822 149567.8797 1.476952466 2.408660522 3.116462137 0.723033284 2.572153129 1.600997838 1.33366138 1.541056971 2.126337439 1 17.19044086 -5.898689505 0.928188384 1.540145453 2.194631292 0.119545781 0.665720755 1.267982983 2.380718505 0.341277433 0.464417649 1.26E-06 5.898689505 0.654485839 FDPLLRDS(ph)PGRPVPVATETSSMHGANETPSGRPR ddPTM_HeLa_A486_30min_R1 2 FDPLLRDSPGRPVPVATETSSMHGANETPSGRPR 34 3 A0A494BZT8;Q9Y6A5;A0A494C117 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 FDPLLRDS(1)PGRPVPVATETSSMHGANETPSGRPR;FDPLLRDS(1)PGRPVPVATETSSMHGANETPSGRPR ; 157.19 3.93E-10 1466190000 255712 258876 310027 25471.9 391900 212803 217722 258058 277791 102419 TRUE FALSE FALSE 237787.9093 238361.7229 430077.7572 59299.87048 342744.2477 186549.5295 163245.6528 199303.8268 301870.1475 76772.61576 3.097301127 3.104775324 5.601968266 0.772409145 4.464407579 2.429896749 2.126352621 2.596027565 3.932002896 1 16.22830418 -9.886217197 0.227149354 3.02E-14 3.56014041 0.19252361 1.268928841 27.20211933 1.503775156 24.71803144 2.724123035 1.30E-10 9.886217197 3.56014041 FDQLFDDES(ph)DPFEVLK ddPTM_HeLa_A486_30min_R1 1 FDQLFDDESDPFEVLK 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 FDQLFDDES(1)DPFEVLK 125.52 2.26E-05 143190000 101220 111320 53308 51903 91760 134560 147370 129830 96677 146770 TRUE FALSE FALSE 94125.0007 102498.5978 73950.28524 120832.807 80250.60517 117959.3553 110496.4673 100270.5432 105057.0402 110017.8367 0.855543097 0.931654365 0.672166327 1.098301972 0.729432677 1.072183919 1.004350482 0.911402607 0.954909162 1 16.74737791 -6.275962292 24.91011702 0.984018216 0.864634323 0.248324543 0.113604891 1220.316055 2093115.371 0.038100665 0.033750755 5.30E-07 6.275962292 -0.119383893 FDSPDLLLEAGDPAT(ph)SPCR ddPTM_HeLa_A485_30min_R1 1 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 FDSPDLLLEAGDPAT(0.5)S(0.5)PCR 98.507 0.0014524 46620000 28973 34586 31426 31695 43253 28996 43831 34737 31884 43007 TRUE FALSE FALSE 35417.94389 38630.53184 43051.78514 33426.41759 38946.57945 30514.18572 34466.14878 26217.69628 38282.82634 32286.14639 1.097001279 1.196504884 1.333444525 1.035317662 1.206293838 0.945116997 1.067521295 0.812041672 1.185735389 1 14.97862763 -6.257756356 24.98042051 0.994425562 1.176164096 0.360907036 0.113943797 337.4798891 2288988.746 0.036735898 0.035352392 5.52E-07 6.257756356 0.181738534 FDSPDLLLEAGDPAT(ph)SPCR ddPTM_HeLa_A486_30min_R1 1 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 FDSPDLLLEAGDPAT(0.5)S(0.5)PCR 162.81 1.16E-11 125940000 129040 192750 152130 74888 218210 194920 218160 202700 153460 173430 TRUE FALSE FALSE 119994.9624 177475.788 211038.8102 174343.0486 190840.0671 170872.7522 163574.0605 156549.6349 166762.0364 130001.9992 0.923023978 1.365177375 1.623350499 1.341079751 1.467977941 1.314385573 1.258242655 1.204209442 1.282765169 1 16.98817428 -8.219200524 0.663712424 1.001986694 1.354741128 0.239169472 0.16945389 1.488013381 1.397227264 0.182816659 0.070307579 6.04E-09 8.219200524 0.352754433 FDSPDLLLEAGDPATS(ph)PCR ddPTM_HeLa_A485_30min_R1 3 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 FDSPDLLLEAGDPAT(0.133)S(0.867)PCR;FDSPDLLLEAGDPAT(0.016)S(0.984)PCR;FDSPDLLLEAGDPAT(0.194)S(0.806)PCR ;; 176.85 2.42E-13 250320000 212558.4 248303.4 276832.9 262933.1 338673.3 212164.2 317016.7 269583.6 229306.7 356938.9 TRUE FALSE FALSE 259841.2828 277340.3227 379244.9097 277296.4695 304953.7971 223272.7894 249283.4923 203467.7994 275326.4514 267960.6012 0.969699581 1.035004107 1.415301011 1.034840451 1.138054609 0.833229917 0.930299048 0.759319835 1.027488557 1 18.03166137 -6.253484437 24.56475177 0.896289433 1.125769172 0.378215411 0.132931032 482.3727744 1489560.841 0.044367179 0.043577721 5.58E-07 6.253484437 0.229479739 FDSPDLLLEAGDPATS(ph)PCR ddPTM_HeLa_A486_30min_R1 2 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 FDSPDLLLEAGDPAT(0.151)S(0.849)PCR;FDSPDLLLEAGDPAT(0.263)S(0.737)PCR ; 247.73 5.16E-46 217346000 244070 329290 267900 117894 354150 314870 340930 359810 291280 319380 TRUE FALSE FALSE 226961.9534 303195.8611 371638.0546 274463.19 309729.2047 276024.5408 255625.708 277889.1176 316528.3849 239405.1692 0.948024448 1.266454948 1.552339308 1.146438028 1.29374485 1.15295982 1.067753503 1.160748193 1.322145157 1 17.86909478 -6.295937623 11.40917025 1.146166407 1.254781709 0.087064782 0.1596163 2.902876267 954.8607634 0.057254731 0.05065154 5.06E-07 6.295937623 0.108615302 FEAHPNDLYVEGLPENIPFRS(ph)PSWYGIPR ddPTM_HeLa_A485_30min_R1 1 FEAHPNDLYVEGLPENIPFRSPSWYGIPR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 1 0 FEAHPNDLYVEGLPENIPFRS(0.5)PS(0.5)WYGIPR 238.05 3.60E-50 322660000 138660 182000 178700 136040 224650 181840 237090 241990 149260 174490 TRUE FALSE FALSE 169504.4386 203283.3168 244808.5663 143471.5207 202283.0572 191360.8612 186433.7847 182641.5731 179215.1129 130992.8543 1.293997597 1.551865695 1.868869624 1.095262192 1.544229709 1.460849619 1.423236296 1.394286537 1.368128925 1 16.99912859 -10.3760131 0.282883029 0.660344453 1.510880154 0.355771329 0.185320315 21.92312142 1.267611977 5.634543906 0.229545194 4.21E-11 10.3760131 0.850535701 FEAHPNDLYVEGLPENIPFRS(ph)PSWYGIPR ddPTM_HeLa_A486_30min_R1 2 FEAHPNDLYVEGLPENIPFRSPSWYGIPR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 1 0 FEAHPNDLYVEGLPENIPFRS(0.824)PS(0.176)WYGIPR;FEAHPNDLYVEGLPENIPFRS(0.901)PS(0.099)WYGIPR ; 250.08 5.91E-51 399010000 427640 445880 391700 163740 524460 396500 493710 501740 395380 424540 TRUE FALSE FALSE 397664.6443 410546.8449 543376.7301 381194.995 458677.3364 347583.8613 370178.5361 387504.7549 429651.8567 318232.4207 1.249604435 1.290084913 1.707483885 1.197850911 1.441328119 1.092232716 1.16323326 1.217678432 1.350119689 1 18.2797213 -6.257052959 24.96391577 1.178168998 1.380804253 0.318459272 0.154847797 491.4322013 2796831.09 0.051725974 0.050030419 5.53E-07 6.257052959 0.202635255 FEALNLS(ph)FK ddPTM_HeLa_A486_30min_R1 2 FEALNLSFK 9 0 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88;A0A0A0MT46;Q9UKI9-2;H0YKT2;B5ME60;H0YLL6;H0YNW1;U3KQN1;H0YLC5;P09086-3;U3KQ96;P09086;Q9UKI9;Q9UKI9-3;P09086-4;P09086-5;P09086-2 P14859-6 POU2F1;POU2F3;POU2F2 "POU domain, class 2, transcription factor 1;POU domain protein;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2" 1 0 FEALNLS(1)FK;FEALNLS(1)FK ; 83.045 0.0061623 85130000 151062 165207 96844 108676 157782 181225 239386 234726 143259 241073 TRUE FALSE FALSE 140473.3339 152115.3956 134344.5904 253003.2202 137991.5103 158867.3021 179489.0908 181284.0138 155676.8055 180706.7517 0.777355204 0.841780366 0.743439795 1.400076189 0.763621221 0.879144252 0.993261675 1.003194469 0.861488594 1 17.46329088 FEDEDS(ph)DDVPR ddPTM_HeLa_A485_30min_R1 3 FEDEDSDDVPR 11 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 FEDEDS(1)DDVPR;FEDEDS(1)DDVPR;FEDEDS(1)DDVPR ;; 193.49 4.22E-11 271970000 632870 658700 561750 680760 630590 576320 726700 577270 523740 838590 TRUE FALSE FALSE 773649.7481 735729.2351 769564.7014 717948.195 567806.2455 606495.224 571434.6084 435693.6274 628849.814 629544.9461 1.228903119 1.168668321 1.222414231 1.140424047 0.901931227 0.963386694 0.907694696 0.692077079 0.998895818 1 19.26394986 -5.704307494 3.350415955 0.894930446 1.201350913 0.727890299 0.08399776 0.121664848 2.769461264 0.026236876 0.033689137 1.98E-06 5.704307494 0.306420467 FEDEDS(ph)DDVPR ddPTM_HeLa_A486_30min_R1 1 FEDEDSDDVPR 11 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 FEDEDS(1)DDVPR 128.85 4.86E-05 171650000 292940 329840 217470 107330 241370 296680 296820 290240 280110 401770 TRUE FALSE FALSE 272406.4187 303702.2771 301680.208 249869.6642 211095.1239 260078.638 222552.4966 224158.6879 304390.1603 301164.1769 0.904511358 1.00842763 1.001713455 0.829679236 0.70093039 0.863577603 0.738974 0.744307275 1.01071171 1 18.20019065 -5.270918944 21.08234113 0.821347004 0.975238491 0.240974198 0.101810658 89.99510514 200148.7339 0.027711781 0.041937543 5.36E-06 5.270918944 0.153891487 FEDENFHYKHDR ddPTM_HeLa_A485_30min_R1 1 FEDENFHYKHDR 12 1 Q08752 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 0 0 121.08 9.19E-05 74592000 49886 59354 36892 39014 46653 44597 49061 58179 39336 53512 FALSE FALSE TRUE 60982.9686 66294.93399 50539.886 41145.23603 42008.06351 46932.02996 38578.71656 43910.50903 47230.37439 40172.44322 1.518029866 1.650258951 1.258073494 1.024215426 1.045693519 1.168264268 0.960327863 1.093050497 1.175690862 1 15.29391859 -4.93250522 3.519994267 1.071725737 1.583272436 0.887722198 0.07274424 0.065654026 1.635904274 0.019433417 0.044366096 1.17E-05 4.93250522 0.511546698 FEDENFILK ddPTM_HeLa_A485_30min_R1 6 FEDENFILK 9 0 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;;;; ;;;;; 205.36 1.02E-11 462060000 830310 831730 630626 862070 830524 865800 1050490 922980 688231 1151490 FALSE FALSE TRUE 1015009.595 928993.5884 863920.7999 909162.7012 747834.1144 911131.9492 826044.2298 696617.7078 826352.6489 864444.7346 1.17417523 1.074670886 0.999393906 1.051730278 0.865103441 1.054008328 0.955577837 0.80585569 0.95593462 1 19.72141421 -2.583593523 0.450947591 0.925580917 2.239547449 0.517436839 0.069780867 16.1049261 0.764436366 0.044405404 15.60292394 0.002608594 2.583593523 1.313966532 FEDENFILK ddPTM_HeLa_A486_30min_R1 3 FEDENFILK 9 0 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;; ;; 191.85 7.86E-09 181358000 310463 338876 194751 135226 583318 338901 355431 302525 274220 371691 FALSE FALSE TRUE 288701.1469 312022.2316 270163.8028 314812.9619 510152.8172 297090.8403 266498.4044 233646.6616 297989.6104 278617.1543 1.036193007 1.119895982 0.969659616 1.129912344 1.831017256 1.066304912 0.956503935 0.838593956 1.069530737 1 18.08792456 -6.516390466 24.8585868 0.961091972 1.218841213 0.215121821 0.227202434 470.2361386 1801632.946 0.09083532 0.072992054 3.05E-07 6.516390466 0.25774924 FEEESKEPVADEEEEDS(ph)DDDVEPITEFR ddPTM_HeLa_A485_30min_R1 10 FEEESKEPVADEEEEDSDDDVEPITEFR 28 1 E9PJF4;P54105 E9PJF4 CLNS1A Methylosome subunit pICln 1 0 FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(0.998)DDDVEPIT(0.002)EFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(0.998)DDDVEPIT(0.002)EFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR ;;;;;;;;; 367.94 5.00E-167 72543188000 5470030 5142651 4147579 7643854 6899401 6306917 9587421 9339459 5211745 9929966 TRUE FALSE FALSE 6686819.302 5744039.299 5681941.067 8061418.389 6212472.411 6637137.422 7538990.181 7048942.037 6257694.417 7454608.224 0.897004792 0.770535369 0.762205189 1.081400678 0.833373428 0.890340206 1.011319436 0.945581823 0.839439744 1 22.8297011 -5.226014253 24.99989155 0.936874261 0.805977125 0.364651547 0.080199838 663.9309326 468542.4949 0.021353562 0.036983462 5.94E-06 5.226014253 -0.130897135 FEEESKEPVADEEEEDS(ph)DDDVEPITEFR ddPTM_HeLa_A486_30min_R1 7 FEEESKEPVADEEEEDSDDDVEPITEFR 28 1 E9PJF4;P54105 E9PJF4 CLNS1A Methylosome subunit pICln 1 0 FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR ;;;;;; 414.94 2.22E-205 58033100000 2152032 2145088 1296583 1176864 2238521 2536730 3296380 3027610 1769755 3406300 TRUE FALSE FALSE 2001185.67 1975103.415 1798654.661 2739798.867 1957744.823 2223774.044 2471590.858 2338289.295 1923158.788 2553340.309 0.783752038 0.773537083 0.704432016 1.073025346 0.766738698 0.870927403 0.967983331 0.915776596 0.75319329 1 21.2839544 -5.216134134 24.99956185 0.898515227 0.755870021 0.353572324 0.094263874 511.5453808 282271.4436 0.024746998 0.042862862 6.08E-06 5.216134134 -0.142645206 FEELCSDLFR ddPTM_HeLa_A485_30min_R1 3 FEELCSDLFR 10 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ;; ;; 114.5 0.0014391 15730000 89841 88733 95635 93830 117747 80672 96098 89187 82368 115202 FALSE FALSE TRUE 109825.8205 99109.55248 131014.3662 98955.69531 106023.6952 84895.86118 75565.87725 67313.74841 98898.50208 86484.26154 1.269893719 1.145983682 1.514892581 1.144204663 1.225930515 0.981633648 0.873752934 0.778335239 1.143543349 1 16.40014999 -6.22571446 2.26812607 0.927153324 1.275580441 0.579870719 0.129777003 0.213897207 2.162406402 0.049123378 0.046401364 5.95E-07 6.22571446 0.348427117 FEELCSDLFR ddPTM_HeLa_A486_30min_R1 2 FEELCSDLFR 10 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741 A0A0G2JIW1;P17066 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ; ; 171.36 1.05E-05 63096000 88431 123151 91032 39047 152386 109194 111527 106172 105298 94681 FALSE FALSE TRUE 82232.44356 113392.0663 126282.0283 90903.38933 133272.3269 95722.75448 83621.76499 81998.95332 114425.3154 70972.26133 1.158656101 1.597695552 1.77931527 1.280829829 1.87780866 1.348734741 1.178231656 1.15536622 1.612254045 1 16.11496765 -6.510070501 24.36284742 1.251420544 1.548365025 0.255693076 0.24407968 615.6216651 1170993 0.08549025 0.071811169 3.09E-07 6.510070501 0.296944481 FEELNADLFR ddPTM_HeLa_A485_30min_R1 6 FEELNADLFR 10 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;;;;; ;;;;; 218.47 5.21E-21 132586000 245746 275909 272756 275338 348486 250733 308433 280658 263344 364710 FALSE FALSE TRUE 300411.3499 308174.1575 373659.7947 290379.0177 313789.5102 263860.9922 242533.7699 211826.1854 316194.7253 273794.509 1.097214663 1.125567341 1.364745393 1.060572832 1.146076711 0.963719079 0.885824083 0.773668494 1.154861456 1 18.06273399 -6.238219051 2.543956039 0.93173794 1.170580641 0.421450589 0.11785456 0.265802936 3.401684732 0.044102157 0.041463008 5.78E-07 6.238219051 0.238842702 FEELNADLFR ddPTM_HeLa_A486_30min_R1 2 FEELNADLFR 10 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ; ; 160.53 2.64E-05 128728000 82042 111664.2 83452.2 39067.1 136289 94793.2 107712.4 107736.7 96342.7 100522.1 FALSE FALSE TRUE 76291.27947 102815.5221 115767.1268 90950.18314 119194.3628 83098.57877 80761.61825 83207.40529 104693.7628 75350.71187 1.012482531 1.364493043 1.536377347 1.207024869 1.581861137 1.10282407 1.071809625 1.104268337 1.389419691 1 16.20133352 -6.335098921 24.99997382 1.136314838 1.345261439 0.255115778 0.176544422 200.7931481 68147.84421 0.061227642 0.053997711 4.62E-07 6.335098921 0.208946601 FEGLS(ph)PLQR ddPTM_HeLa_A485_30min_R1 4 FEGLSPLQR 9 0 Q9Y3E2 Q9Y3E2 BOLA1 BolA-like protein 1 1 0 FEGLS(1)PLQR;FEGLS(1)PLQR;FEGLS(1)PLQR;FEGLS(1)PLQR ;;; 141.88 0.0001201 345811000 418051 526832 502452 433269 655306 496676 594826 649867 418310 593479 TRUE FALSE FALSE 511045.0027 588440.4196 688329.9036 456937.3884 590061.4337 522681.1874 467736.5658 490486.0993 502260.98 445535.6075 1.147035151 1.320748353 1.544949252 1.025591178 1.324386702 1.173152445 1.049829818 1.100890908 1.127319504 1 18.76518121 -6.342426908 0.924961629 1.062911124 1.303698124 0.3419806 0.130088126 0.66657616 1.208244641 0.08221626 0.069760457 4.55E-07 6.342426908 0.240787001 FEGLS(ph)PLQR ddPTM_HeLa_A486_30min_R1 4 FEGLSPLQR 9 0 Q9Y3E2 Q9Y3E2 BOLA1 BolA-like protein 1 1 0 FEGLS(1)PLQR;FEGLS(1)PLQR;FEGLS(1)PLQR;FEGLS(1)PLQR ;;; 113.63 0.00076774 419462000 681070 729470 588280 225206 820490 660530 732890 742270 595030 743320 TRUE FALSE FALSE 633330.51 671664.1405 816077.7707 524290.9493 717576.4934 579040.5244 549513.1703 573271.3246 646607.6795 557187.8338 1.13665531 1.205453708 1.464636737 0.940959076 1.287853844 1.039219612 0.986226075 1.028865474 1.160484203 1 19.08780423 -5.940681453 1.169331047 1.042816508 1.235223411 0.248448986 0.132923705 0.66199404 1.913199407 0.058852597 0.071861099 1.15E-06 5.940681453 0.192406903 FEHCNFNDVTTR ddPTM_HeLa_A485_30min_R1 1 FEHCNFNDVTTR 12 0 E9PNW4;A0A2U3TZL5;P13987;P13987-2 E9PNW4 CD59 CD59 glycoprotein 0 0 99.011 0.0025511 17620000 10699 11094 12284 13413 14672 11444 14299 14006 11794 20896 FALSE FALSE TRUE 13078.95564 12391.3468 16828.36278 14145.71823 13211.20416 12043.19014 11243.90184 10571.00654 14160.94762 15687.01176 0.833744236 0.789911232 1.072757708 0.901747155 0.842174683 0.767717289 0.716765054 0.673869995 0.902717983 1 13.93728294 -5.970141379 3.413535373 0.786632991 0.903378706 0.09913147 0.11111748 0.419466471 10.26536377 0.037057757 0.040986966 1.07E-06 5.970141379 0.116745715 FEIVYNLLSLR ddPTM_HeLa_A485_30min_R1 2 FEIVYNLLSLR 11 0 O75489 O75489 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" 0 0 ; ; 139.86 0.0011831 7969500 8352.4 8871.4 10333.2 10193.7 8686.3 6287.7 10444.6 7211.4 7404.4 13504.9 FALSE FALSE TRUE 10210.36256 9908.833059 14155.88068 10750.55602 7821.461473 6616.914249 8213.025885 5442.792843 8890.395163 10138.37697 1.007100308 0.97735891 1.396266949 1.060382352 0.771470769 0.652660112 0.81009277 0.53685051 0.876905168 1 13.30753909 -5.733392137 4.404199204 0.744766547 1.128155632 0.518715 0.157719642 0.148868448 6.583395374 0.047497462 0.059592718 1.85E-06 5.733392137 0.383389085 FEIVYNLLSLR ddPTM_HeLa_A486_30min_R1 1 FEIVYNLLSLR 11 0 O75489 O75489 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" 0 0 147.91 0.00061637 9188300 5544.2 7362.2 5945.1 3171.9 8068.6 7518.5 7562.6 7626.1 7036 7021.2 FALSE FALSE TRUE 5155.58021 6778.792459 8247.201935 7384.343499 7056.560951 6590.943913 5670.357491 5889.803507 7645.886145 5263.04582 0.979581099 1.287997994 1.567001736 1.403055142 1.340775132 1.25230601 1.077390866 1.119086496 1.452749303 1 12.36168224 -6.505265085 4.935090482 1.170612986 1.330783352 0.141838484 0.175089081 0.387124803 26.15500003 0.067949197 0.056164052 3.12E-07 6.505265085 0.160170367 FEK(ac)LIVALMKPSR ddPTM_HeLa_A485_30min_R1 1 FEKLIVALMKPSR 13 2 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 1 FEK(1)LIVALMKPSR 106.42 0.00957 3163500 5410 5560.3 5087.8 6376 5659.5 5277.9 6930.3 6849.2 4378.5 7350 FALSE TRUE FALSE 6613.435836 6210.528717 6969.988941 6724.304735 5096.020308 5554.242683 5449.58479 5169.422961 5257.224788 5517.780267 1.198568177 1.125548394 1.263187116 1.218661203 0.923563473 1.006608167 0.987640777 0.936866405 0.952778932 1 12.42987229 -5.757554374 24.99999858 0.96767442 1.200473624 0.891370464 0.039946765 30.92384025 198993.2819 0.012310595 0.015295447 1.75E-06 5.757554374 0.232799204 FELLPT(ph)PPLS(ph)PSRR ddPTM_HeLa_A486_30min_R1 1 FELLPTPPLSPSRR 14 1 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 2 0 FELLPT(1)PPLS(0.82)PS(0.18)RR 51.798 0.038002 26372000 37260 44796 42753 17289 54443 45957 50443 54468 42764 53139 TRUE FALSE FALSE 34648.26641 41246.20182 59308.10657 40249.66574 47614.25128 40287.2926 37821.62787 42066.82543 46470.81795 39832.64852 0.86984591 1.035487304 1.488932039 1.010469231 1.195357403 1.011413855 0.949513258 1.056089087 1.16665147 1 15.28166379 -6.279005013 23.6591941 1.034787827 1.129731352 0.062945032 0.158381757 1230.15762 1656895.202 0.0574852 0.050830941 5.26E-07 6.279005013 0.094943526 FELLPTPPLS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 FELLPTPPLSPSR 13 0 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1;P04198 H0YBT0 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 0 FELLPT(0.091)PPLS(0.896)PS(0.013)R 121.04 0.00019388 0 24107 27377 25508 24897 26443 26286 37793 35344 29415 43160 TRUE FALSE FALSE 29469.51898 30578.502 34944.47068 26257.06007 23810.24207 27662.29431 29718.21681 26675.82858 35318.32069 32401.0063 0.909524806 0.943751614 1.078499549 0.810377919 0.734861191 0.853748 0.917200427 0.823302472 1.090037771 1 14.983751 -9.678281498 11.61246863 0.999999999 0.901342719 0.062367844 0.106514564 0 0 0.10700779 0.025953201 2.10E-10 9.678281498 -0.09865728 FELLPTPPLS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 FELLPTPPLSPSR 13 0 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1;P04198 H0YBT0 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 0 FELLPT(0.082)PPLS(0.9)PS(0.019)R 130.1 2.15E-05 26135000 30975 42720 30875 12172 37583 38519 39566 35366 32672 41093 TRUE FALSE FALSE 28803.81246 39334.71162 42830.62686 28337.03114 32868.98969 33766.91741 29666.16831 27313.93383 35504.03527 30803.04533 0.935096259 1.276974766 1.390467287 0.91994252 1.067069484 1.096220099 0.963092058 0.886728359 1.152614454 1 14.91078537 -5.278724689 24.98383457 1.011254623 1.208458996 0.305822337 0.130060245 925.5958843 1337835.456 0.03676849 0.054681135 5.26E-06 5.278724689 0.197204373 FELLPTPPLS(ph)PSRR ddPTM_HeLa_A485_30min_R1 1 FELLPTPPLSPSRR 14 1 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 0 FELLPTPPLS(0.795)PS(0.205)RR 112.82 0.00011492 0 64484 103410 79391 67149 106290 102980 122030 149410 92616 117660 TRUE FALSE FALSE 78828.24333 115502.9 108761.0346 70817.17984 95707.39439 108371.8736 95957.29361 112766.9632 111203.1817 88329.52737 0.892433659 1.307636341 1.231310049 0.801738467 1.083526622 1.226904262 1.086355791 1.276662138 1.258958187 1 16.43060817 -6.188966669 7.532707381 1.181710889 1.071188167 0.100324457 0.156633379 0.742441212 68.81291512 0.05308489 0.053065682 6.47E-07 6.188966669 -0.110522722 FELLPTPPLS(ph)PSRR ddPTM_HeLa_A486_30min_R1 2 FELLPTPPLSPSRR 14 1 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 0 FELLPTPPLS(0.794)PS(0.206)RR;FELLPTPPLS(0.992)PS(0.008)RR ; 142.94 1.16E-05 0 192373 165450 136082 75712 201566 173530 178566 181960 149670 197468 TRUE FALSE FALSE 178888.6461 152339.1394 188776.5948 176261.3623 176283.7128 152121.6329 133886.8981 140531.6802 162643.5161 148020.7275 1.208537812 1.029174373 1.27533892 1.19078838 1.190939375 1.02770494 0.904514526 0.949405415 1.09878879 1 17.17543969 -6.351617304 4.192043182 0.982285996 1.176756656 0.607527873 0.073758496 0.16060928 5.07918988 0.027096993 0.023816945 4.45E-07 6.351617304 0.194470661 FENAFLSHVVSQHQALLGTIR ddPTM_HeLa_A485_30min_R1 2 FENAFLSHVVSQHQALLGTIR 21 0 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 279.79 1.77E-64 132268000 61832 83341 83032 39907 89091 76172 92397 89014 64428 99578 FALSE FALSE TRUE 75586.31508 93087.00498 113748.992 42087.01836 80220.78722 80160.24814 72655.62614 67183.17693 77358.10863 74755.0372 1.011120025 1.245227191 1.521623108 0.562999096 1.073115475 1.072305642 0.971916126 0.898711036 1.034821352 1 16.18988317 -5.246245416 24.99988204 0.952402246 1.257913774 0.390513679 0.179865553 872.4852993 1435569.89 0.048499631 0.083598422 5.67E-06 5.246245416 0.305511527 FENAFLSHVVSQHQALLGTIR ddPTM_HeLa_A486_30min_R1 2 FENAFLSHVVSQHQALLGTIR 21 0 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 284.45 4.03E-65 166906000 74462 106031 103146 12709.6 127305 88714 94299 92758 146103 63849 FALSE FALSE TRUE 69242.59832 97628.7174 143086.8935 29588.59111 111337.2198 77769.36866 70704.39281 71639.02829 158767.3257 47860.79481 1.446749863 2.03984739 2.989647249 0.618221892 2.326271853 1.624907588 1.477292491 1.496820698 3.317273069 1 15.54655674 -5.234904724 24.9969082 1.729485241 2.146857699 0.06902909 0.773617946 2470.374601 2327207.809 0.203556841 0.3524352 5.82E-06 5.234904724 0.417372459 FEPES(ph)PGFESR ddPTM_HeLa_A485_30min_R1 5 FEPESPGFESR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR ;;;; 246.51 4.16E-22 2640913000 2493070 3527810 3070520 2539400 3971410 3128220 3566550 4177240 2977000 3750000 TRUE FALSE FALSE 3047644.821 3940356.692 4206433.123 2678120.992 3576002.476 3292008.762 2804527.456 3152765.34 3574456.593 2815194.014 1.082570084 1.399675004 1.494189424 0.951309565 1.27025081 1.169371896 0.996211076 1.119910502 1.269701689 1 21.42480292 -5.260188962 24.99806989 1.120250457 1.332897845 0.325363378 0.140987221 134.7185988 2693236.774 0.038656779 0.062534487 5.49E-06 5.260188962 0.212647389 FEPES(ph)PGFESR ddPTM_HeLa_A486_30min_R1 6 FEPESPGFESR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR ;;;;; 258.65 2.40E-27 2375270000 3079360 3111300 2533340 1033412 3416780 2871560 3276170 3038350 2818750 3145610 TRUE FALSE FALSE 2863512.766 2864749.257 3514317.093 2405835.362 2988215.592 2517296.123 2456437.614 2346584.032 3063081.52 2357928.782 1.214418683 1.21494308 1.490425462 1.02031723 1.267305279 1.067587852 1.041777696 0.99518868 1.299055995 1 21.16908871 -5.283927264 24.99860559 1.101898236 1.297430525 0.375431332 0.122633692 843.071806 937197.0581 0.033950429 0.050397075 5.20E-06 5.283927264 0.195532288 FEPLDSACS(ph)SR ddPTM_HeLa_A486_30min_R1 1 FEPLDSACSSR 11 0 Q9UPZ3-2;Q9UPZ3;G3V159 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 FEPLDS(0.002)ACS(0.499)S(0.499)R 84.507 0.0042726 86528000 108500 154480 124590 38424 166530 134440 155490 154590 115230 138530 TRUE FALSE FALSE 100894.7103 142238.4422 172834.5846 89453.01384 145642.2546 117854.1597 116584.7574 119393.2317 125218.2292 103841.1863 0.97162517 1.369769041 1.664412655 0.8614406 1.402548061 1.134946199 1.12272174 1.149767601 1.205862853 1 16.66401924 -7.787200594 0.327153088 0.989349119 1.288507125 0.088216534 0.214304507 3.757595645 1.294389452 0.417885416 0.285316022 1.63E-08 7.787200594 0.299158006 FES(ph)PATGILS(ph)PR ddPTM_HeLa_A485_30min_R1 2 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 FES(0.817)PAT(0.183)GILS(1)PR;FES(0.996)PAT(0.004)GILS(1)PR ; 152.11 2.16E-07 126971000 317580 370510 316100 373600 482860 340840 451570 464050 301330 445090 TRUE FALSE FALSE 388224.5754 413837.9215 433038.544 394008.822 434784.763 358685.8554 355088.3805 350241.0099 361804.167 334137.2543 1.161871567 1.238526732 1.295990012 1.179182557 1.301216064 1.073468614 1.062702156 1.048195032 1.082801042 1 18.35008132 -6.339166483 6.402672854 1.055429791 1.235520139 0.799985112 0.045510532 0.104552998 7.069932038 0.015538643 0.013688869 4.58E-07 6.339166483 0.180090348 FES(ph)PATGILS(ph)PR ddPTM_HeLa_A486_30min_R1 2 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 FES(0.998)PAT(0.002)GILS(1)PR;FES(0.995)PAT(0.005)GILS(1)PR ; 124.62 9.19E-05 139084000 273910 297980 224899 180669 339190 291830 322120 340350 234570 306070 TRUE FALSE FALSE 254710.3235 274366.9796 311985.9158 420606.5625 296645.6274 255826.9817 241522.169 262859.7348 254902.7165 229428.0798 1.110196815 1.195873582 1.359841899 1.833282843 1.29297873 1.115063953 1.052714076 1.145717364 1.111035391 1 17.80768245 -6.201548788 4.306905545 1.090723464 1.38099242 0.365233782 0.181400143 0.273791715 10.43266613 0.06778182 0.066650212 6.29E-07 6.201548788 0.290268956 FES(ph)PEVAER ddPTM_HeLa_A485_30min_R1 2 FESPEVAER 9 0 A0A087X0X3;P52272-2;P52272 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 FES(1)PEVAER;FES(1)PEVAER ; 253.59 1.43E-38 785160000 577900 676830 625640 668270 829760 661280 895110 892100 575490 864280 TRUE FALSE FALSE 706451.8613 755979.3809 857090.2711 704775.898 747146.1809 695903.5983 703862.4361 673311.0762 690985.5643 648830.9019 1.08880736 1.165140838 1.320976342 1.086224309 1.151526813 1.072550022 1.084816451 1.037729668 1.064970183 1 19.30748301 -6.274494545 1.031624318 1.039981736 1.181404384 0.455091604 0.062463874 0.492337164 1.101426937 0.035895823 0.032135328 5.32E-07 6.274494545 0.141422649 FES(ph)PEVAER ddPTM_HeLa_A486_30min_R1 2 FESPEVAER 9 0 A0A087X0X3;P52272-2;P52272 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 FES(1)PEVAER;FES(1)PEVAER ; 184.9 2.71E-08 1543900000 1958300 2042530 1439240 886810 2335000 2015030 2348600 2317200 1619610 2281800 TRUE FALSE FALSE 1821033.283 1880672.484 1996552.272 2064538.497 2042122.527 1766436.086 1760955.439 1789624.144 1759999.099 1710422.428 1.064668735 1.099536847 1.167286069 1.207034276 1.193928759 1.032748435 1.02954417 1.046305354 1.028985045 1 20.70592125 -6.276928849 24.09294182 1.03053739 1.148401178 0.682196126 0.040565419 342.2246282 532307.7997 0.016065598 0.014225353 5.29E-07 6.276928849 0.117863788 FESPATGILS(ph)PR ddPTM_HeLa_A485_30min_R1 3 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR ;; 151.66 1.10E-07 2056590000 443760 802420 847890 400310 849350 639020 644150 677720 640000 438840 TRUE FALSE FALSE 542472.881 896256.0389 1161559.795 422177.9217 764785.7318 672478.0991 506522.0903 511508.1074 768442.1296 329445.2643 1.646625221 2.720500599 3.525805105 1.281481228 2.321434893 2.041243788 1.537499989 1.552634574 2.332533543 1 18.32967926 -5.278412913 24.94605433 1.777220741 2.639929478 0.333719795 0.583943986 920.4585634 1352798.658 0.162986134 0.242460752 5.27E-06 5.278412913 0.862708737 FESPATGILS(ph)PR ddPTM_HeLa_A486_30min_R1 5 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR;FESPATGILS(1)PR;FESPAT(0.003)GILS(0.997)PR ;;;; 197.68 5.78E-17 3379474000 531177 635275 591388 147353.5 743072 453391 506718 563236 559216 450924 TRUE FALSE FALSE 493944.2353 584933.4954 820389.2715 343046.3948 649868.9809 397456.2282 379931.7969 434999.4582 607689.2931 338009.6954 1.46133156 1.730522832 2.427117573 1.01490105 1.922634143 1.175872271 1.124026328 1.28694373 1.797845747 1 18.3667051 -5.278504983 24.99806359 1.353172779 1.858743966 0.312190907 0.367006142 1014.674172 1486314.126 0.102337613 0.152228686 5.27E-06 5.278504983 0.505571187 FEVDQLQGLRNS(ph)VR ddPTM_HeLa_A486_30min_R1 1 FEVDQLQGLRNSVR 14 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 FEVDQLQGLRNS(1)VR 85.146 0.001026 28779000 57508 50964 36432 14667 47356 46957 48890 44725 40623 54945 TRUE FALSE FALSE 53476.98617 46925.42703 50539.44608 34145.51723 41416.1689 41163.92276 36657.20489 34542.09384 44144.23435 41186.41437 1.298413251 1.139342372 1.227090216 0.829048067 1.005578406 0.999453907 0.890031469 0.838676888 1.071815428 1 15.32988091 -5.247865025 24.9979378 0.943231383 1.21338802 0.702577078 0.081550089 425.8998143 784317.0891 0.021595654 0.037135536 5.65E-06 5.247865025 0.270156637 FFALPYVDHFLR ddPTM_HeLa_A485_30min_R1 2 FFALPYVDHFLR 12 0 Q9HD33-3;Q9HD33-2;Q9HD33 Q9HD33-3 MRPL47 "39S ribosomal protein L47, mitochondrial" 0 0 ; ; 114.86 0.00080105 61279000 106058 101588 75962 153352 89917 124805 158868 156706 73135 222780 FALSE FALSE TRUE 129650.2362 113467.8329 104063.5048 161729.2315 80964.54776 131339.5968 124924.554 118273.6078 87812.52367 167245.046 0.775211221 0.67845258 0.622221748 0.967019564 0.484107301 0.785312331 0.746955183 0.707187511 0.525053063 1 17.35160395 -11.10892142 2.597648694 1.571965308 0.701935817 0.323511423 0.130494144 7734660.174 4681534.434 25871595.3 0.030950584 7.78E-12 11.10892142 -0.870029491 FFALPYVDHFLR ddPTM_HeLa_A486_30min_R1 2 FFALPYVDHFLR 12 0 Q9HD33-3;Q9HD33-2;Q9HD33 Q9HD33-3 MRPL47 "39S ribosomal protein L47, mitochondrial" 0 0 ; ; 158.41 3.85E-06 66852000 86986 103342 86373 61562 108902 110772 131142 126313 113440 176106 FALSE FALSE TRUE 80888.7306 95152.80355 119818.9387 143319.4472 95242.49569 97106.07689 98328.88452 97554.28729 123273.0705 132007.9113 0.612756688 0.720811371 0.907664833 1.085688318 0.721490816 0.735608009 0.744871148 0.739003339 0.933830929 1 17.01026487 -7.917078818 4.674921044 0.998190854 0.7911353 0.26876796 0.122569497 0.285530855 10.37037319 0.128188198 0.033547047 1.21E-08 7.917078818 -0.207055554 FFDS(ph)EDEDFEILSL ddPTM_HeLa_A485_30min_R1 4 FFDSEDEDFEILSL 14 0 Q9Y4P1-4;Q9Y4P1 Q9Y4P1-4 ATG4B Cysteine protease ATG4B 1 0 FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL ;;; 164.13 6.74E-12 525223000 567668 736345 717471 632501 1002590 701873 931587 999163 701841 965564 TRUE FALSE FALSE 693943.7882 822454.1424 982893.3794 667052.9281 902768.6193 738621.985 732545.8271 754116.7076 842694.051 724866.6647 0.957339911 1.134628177 1.355964382 0.920242247 1.245427143 1.018976346 1.010593896 1.040352308 1.162550428 1 19.46735612 FFDS(ph)EDEDFEILSL ddPTM_HeLa_A486_30min_R1 4 FFDSEDEDFEILSL 14 0 Q9Y4P1-4;Q9Y4P1 Q9Y4P1-4 ATG4B Cysteine protease ATG4B 1 0 FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL ;;; 203.61 6.71E-22 425098000 1014730 1245050 1083320 599790 1465380 1264890 1417870 1490470 1126410 1309500 TRUE FALSE FALSE 943602.6671 1146387.704 1502810.516 1396341.432 1281578.376 1108840.732 1063103.929 1151122.518 1224048.126 981592.6766 0.961297583 1.167885347 1.530991981 1.422526334 1.305611184 1.129634276 1.083039793 1.172708951 1.247002097 1 19.90476496 -6.26302889 24.03797433 1.134556497 1.293685613 0.191636967 0.15305138 153.7411783 2324992.407 0.056904785 0.052877655 5.46E-07 6.26302889 0.159129116 FFEHHPIPQEEASLAETALTS(ph)GSSPSAPASDSIGPQILTSPSPSK ddPTM_HeLa_A486_30min_R1 1 FFEHHPIPQEEASLAETALTSGSSPSAPASDSIGPQILTSPSPSK 45 0 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 FFEHHPIPQEEAS(0.001)LAET(0.005)ALT(0.032)S(0.296)GS(0.296)S(0.296)PS(0.074)APAS(0.001)DSIGPQILTSPSPSK 102.36 3.30E-06 85291000 8395.1 13597 11757 4460.2 15778 12860 16157 19937 11399 14006 TRUE FALSE FALSE 7806.646842 12519.5242 16309.62526 10383.57101 13798.97612 11273.46395 12114.34771 15397.78032 12387.0745 10498.80644 0.7435747 1.19247119 1.553474232 0.989023949 1.314337606 1.073785294 1.153878565 1.466621984 1.179855498 1 13.3579377 -4.2691784 5.451421162 1.230178626 0.727394288 0.387859939 0.176580545 0.135072485 15.2142979 0.04229344 0.251731898 5.38E-05 4.2691784 -0.502784337 FFEVILIDPFHK ddPTM_HeLa_A485_30min_R1 2 FFEVILIDPFHK 12 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 0 ; ; 166.14 2.03E-06 68045000 134512 102944 111217 152453 187044 97070 140739 96903 110760 222460 FALSE FALSE TRUE 164433.7303 114982.4053 152360.7964 160781.1214 168421.2426 102152.4351 110668.9629 73137.38731 132988.516 167004.8161 0.984604721 0.688497542 0.912313788 0.962733442 1.008481351 0.611673588 0.66266929 0.437935797 0.796315455 1 17.34953018 -6.26954633 24.840204 0.66414921 0.901857629 0.289011027 0.1586649 639.3818744 1959099.936 0.053978187 0.048422833 5.38E-07 6.26954633 0.237708419 FFEVILIDPFHK ddPTM_HeLa_A486_30min_R1 2 FFEVILIDPFHK 12 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 0 ; ; 156.71 4.25E-06 65163000 102925 101956 70079 47192 112912 98544 121851 113964 95053 106076 FALSE FALSE TRUE 95710.48901 93876.63524 97215.46558 109865.361 98749.5241 86386.6432 91362.59099 88016.88502 103292.2706 79513.87916 1.20369538 1.180632064 1.222622599 1.381713005 1.241915564 1.086434772 1.149014385 1.106937379 1.299047055 1 16.27891908 -6.210222018 9.638750885 1.136302363 1.248837754 0.31806796 0.085821405 0.738753386 135.7764619 0.028518278 0.02848619 6.16E-07 6.210222018 0.112535391 FFFNIFTR ddPTM_HeLa_A485_30min_R1 2 FFFNIFTR 8 0 C9JT76;C9JQ14;C9JKV3;P10646-2;P10646 C9JT76 TFPI Tissue factor pathway inhibitor 0 0 ; ; 205.13 5.99E-10 66824000 62382 82497 75193 51279 85097 60126 82093 79409 46384 76748 FALSE FALSE TRUE 76258.66068 92144.30652 103010.0197 54080.24192 76624.44389 63274.10439 64553.15991 59933.81824 55692.84334 57616.13604 1.323564299 1.599279522 1.787867546 0.938630141 1.329912923 1.098201107 1.120400713 1.040226269 0.966618853 1 15.81418529 -5.266256756 24.99996267 1.086279621 1.573141367 0.708083645 0.146774336 217.3767948 1128086.504 0.041361552 0.063641195 5.42E-06 5.266256756 0.486861746 FFFNIFTR ddPTM_HeLa_A486_30min_R1 1 FFFNIFTR 8 0 C9JT76;C9JQ14;C9JKV3;P10646-2;P10646 C9JT76 TFPI Tissue factor pathway inhibitor 0 0 153.78 0.00039555 22069000 23056 18393 15052 6250.3 23063 16062 18275 19010 17795 22748 FALSE FALSE TRUE 21439.89346 16935.47169 20880.53751 14551.01427 20170.22349 14080.43375 13702.40171 14681.83799 19337.48493 17051.75274 1.257342503 0.993180699 1.224539074 0.853344199 1.18288271 0.825747005 0.803577317 0.861016355 1.134046759 1 14.05763242 -5.260048935 24.99936231 0.9439611 1.141836754 0.321061769 0.136897691 157.6700224 2834790.253 0.037763414 0.061065947 5.49E-06 5.260048935 0.197875654 FFGNS(ph)WAETYR ddPTM_HeLa_A486_30min_R1 2 FFGNSWAETYR 11 0 H3BLU7;O43488 H3BLU7 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 1 0 FFGNS(1)WAETYR;FFGNS(1)WAETYR ; 221.96 6.65E-18 163671000 127057 148175 118362 52591 164513 128508 156070 153824 123557 126415 TRUE FALSE FALSE 118150.9604 136433.0734 164194.9362 122434.5058 143878.2455 112653.9895 117019.6353 118801.6332 134267.0202 94759.86118 1.246846069 1.43977705 1.73274775 1.292050287 1.518345887 1.188836583 1.234907204 1.253712613 1.41691871 1 16.53198846 -6.26441077 24.89019448 1.235734066 1.452993125 0.344576957 0.155572886 307.575355 2576432.745 0.053071099 0.048824653 5.44E-07 6.26441077 0.217259059 FFHQLMAGVVYLHGIGITHR ddPTM_HeLa_A485_30min_R1 1 FFHQLMAGVVYLHGIGITHR 20 0 E7EPP6;O14757-2;O14757-3;O14757;A0A087WT52;E9PJI4;E9PPA5;E9PKQ3 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 0 0 101.92 2.82E-05 9929700 1907.1 2046.5 1614 1677.5 1796.8 901.72 2704 2677.9 830.33 2148.9 FALSE FALSE TRUE 2331.327816 2285.820373 2211.085764 1769.137577 1617.904283 948.9326649 2126.26831 2021.140826 996.9696148 1613.218778 1.445140515 1.41693142 1.370605026 1.096650747 1.002904445 0.588223171 1.318028491 1.2528622 0.618000254 1 10.65572639 -5.326131896 2.332872067 0.976477452 1.430029005 0.459077387 0.217702941 0.296740838 3.156942626 0.06787744 0.119933065 4.72E-06 5.326131896 0.453551553 FFLQGIQLNTILPDAR ddPTM_HeLa_A485_30min_R1 1 FFLQGIQLNTILPDAR 16 0 P11279-2;P11279 P11279-2 LAMP1 Lysosome-associated membrane glycoprotein 1 0 0 148.18 5.36E-08 7244100 2694.1 2847.8 2450.2 3000.8 2732 1667.8 2629.7 2763.8 2817.1 5403.9 FALSE FALSE TRUE 3293.39325 3180.825437 3356.630941 3164.726106 2459.992487 1755.123429 2067.843112 2085.973717 3382.46613 4056.807181 0.811819025 0.784071141 0.827407069 0.780102668 0.606386347 0.43263664 0.509721813 0.514190994 0.833775425 1 11.98612902 -5.733379781 5.264897887 0.606789033 0.803980042 0.148157616 0.159884552 0.261702159 18.93661589 0.047344655 0.059501277 1.85E-06 5.733379781 0.19719101 FFLQGIQLNTILPDAR ddPTM_HeLa_A486_30min_R1 1 FFLQGIQLNTILPDAR 16 0 P11279-2;P11279 P11279-2 LAMP1 Lysosome-associated membrane glycoprotein 1 0 0 180.09 8.18E-13 11136000 3947 5972.8 4816.2 1987.4 6780.2 5944.1 6083.8 5094.9 6907.5 5870.1 FALSE FALSE TRUE 3670.335682 5499.493575 6681.161622 4626.767638 5929.764093 5210.777377 4561.568892 3934.902491 7506.247662 4400.188752 0.834131418 1.249831288 1.518380687 1.051492992 1.347615847 1.184216785 1.036675731 0.894257659 1.705892198 1 12.1033497 -6.525761825 24.55338305 1.144687655 1.217794719 0.001986397 0.263315856 459.6285623 3914252.776 0.098274596 0.076560087 2.98E-07 6.525761825 0.073107064 FFMT(ph)PPR ddPTM_HeLa_A485_30min_R1 4 FFMTPPR 7 0 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2 C9J5J4 LIN9 Protein lin-9 homolog 1 0 FFMT(1)PPR;FFMT(1)PPR;FFMT(1)PPR;FFMT(1)PPR ;;; 110.41 0.014435 341607000 674240 935200 917870 663830 1079620 862990 1017860 1010190 782320 942550 TRUE FALSE FALSE 824222.3619 1044563.505 1257428.309 700093.352 972129.242 908174.822 800385.8958 762439.3186 939324.4481 707589.6313 1.164831034 1.476227828 1.777058698 0.989405894 1.373860214 1.283476724 1.131144184 1.077516239 1.327498887 1 19.43255338 -5.933225931 0.916519405 1.145362748 1.430845364 0.210722817 0.204905404 0.917337092 1.683247583 0.109382186 0.143641623 1.17E-06 5.933225931 0.285482616 FFMT(ph)PPR ddPTM_HeLa_A486_30min_R1 3 FFMTPPR 7 0 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2 C9J5J4 LIN9 Protein lin-9 homolog 1 0 FFMT(1)PPR;FFMT(1)PPR;FFMT(1)PPR ;; 111.17 0.014086 248081000 777030 796200 668840 253957 904880 695560 768630 813710 660800 777750 TRUE FALSE FALSE 722564.2096 733106.2123 927832.7602 591224.7303 791381.5127 609748.8791 576310.6443 628445.9962 718078.6761 582996.3377 1.239397511 1.257479962 1.591489861 1.01411397 1.357438223 1.045888009 0.988532186 1.077958738 1.23170358 1 19.1531273 -5.93779515 1.331821971 1.072252053 1.324704677 0.327504332 0.150763133 0.507015005 1.873100459 0.062196582 0.074349491 1.15E-06 5.93779515 0.252452624 FFNIPFLQLQR ddPTM_HeLa_A485_30min_R1 2 FFNIPFLQLQR 11 0 Q3YEC7;Q3YEC7-2;G3V154;F2Z2T0;Q3YEC7-3 Q3YEC7 RABL6 Rab-like protein 6 0 0 ; ; 220.51 4.85E-20 27869000 23685.7 24089.3 24125.2 23841 27513.2 26915 43996 39009 13257.7 34310 FALSE FALSE TRUE 28954.50225 26906.33409 33050.11541 25143.37346 24773.8892 28324.22778 34595.89519 29441.98159 15918.39878 25757.14843 1.12413462 1.044616183 1.283143416 0.976170694 0.961825773 1.099664734 1.343157038 1.143060602 0.618018677 1 14.65268526 -7.740327887 24.95827894 0.80900932 1.121196634 0.437239743 0.142019219 186.1097164 220022.7475 0.09678343 0.036500142 1.82E-08 7.740327887 0.312187314 FFNIPFLQLQR ddPTM_HeLa_A486_30min_R1 1 FFNIPFLQLQR 11 0 Q3YEC7;Q3YEC7-2;G3V154;F2Z2T0;Q3YEC7-3 Q3YEC7 RABL6 Rab-like protein 6 0 0 193.41 1.47E-13 12209000 10048 18161 17648 7704.2 21315 20466 24402 21684 22356 23184 FALSE FALSE TRUE 9343.687088 16721.85622 24481.77823 17935.76695 18641.47395 17941.113 18296.3615 16747.02656 24293.83608 17378.5755 0.537655522 0.962210983 1.408733313 1.032061975 1.072669848 1.032369598 1.052811348 0.963659338 1.397918724 1 14.08502221 -4.325940705 3.690092805 1.11180749 0.509601003 0.573663979 0.150445277 0.160944951 3.798745756 0.037005283 0.23183393 4.72E-05 4.325940705 -0.602206488 FFQGS(ph)QEFLASASASAER ddPTM_HeLa_A485_30min_R1 4 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(0.504)QEFLAS(0.43)AS(0.033)AS(0.033)AER ;;; 166.91 2.81E-14 256390000 156710 205690 204861 168154 215529 178416 220615 235529 176200 228722 TRUE FALSE FALSE 191569.5989 229743.6562 280647.6089 177339.8272 194070.176 187757.5859 173478.803 177765.1435 211561.7238 171705.8147 1.115684982 1.338007432 1.634467705 1.032812008 1.13024813 1.093484144 1.010325732 1.035289013 1.232117411 1 17.38957937 -5.300795954 24.96553469 1.078007303 1.360249012 0.493486136 0.132948932 423.6196763 268718.8867 0.037659706 0.055859303 5.00E-06 5.300795954 0.28224171 FFQGS(ph)QEFLASASASAER ddPTM_HeLa_A486_30min_R1 4 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 FFQGS(0.999)QEFLAS(0.001)ASASAER;FFQGS(1)QEFLASASASAER;FFQGS(1)QEFLASASASAER;FFQGS(0.973)QEFLAS(0.008)AS(0.001)AS(0.018)AER ;;; 122.49 3.77E-06 320361000 245364 280543 269177 95056 320721 239878 255800 266998 232785 299682 TRUE FALSE FALSE 228165.2507 258311.751 373409.5432 221295.1719 280493.1816 210284.2913 191796.1344 206208.3839 252962.9912 224639.6766 1.015694352 1.149893709 1.662259975 0.985111692 1.248635975 0.936095949 0.853794563 0.917951749 1.126083313 1 17.77725324 -6.262605348 24.88670551 0.954595182 1.221225142 0.304492153 0.184840263 123.2698611 2631074.419 0.064359324 0.059926224 5.46E-07 6.262605348 0.266629961 FFQKPKT(ph)PQAPK ddPTM_HeLa_A486_30min_R1 1 FFQKPKTPQAPK 12 2 Q13111;Q13111-2;Q13111-3;K7EPA1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 FFQKPKT(1)PQAPK 69.729 0.012195 150870000 407940 287410 96474 255890 270770 428130 566580 541450 216980 692340 TRUE FALSE FALSE 379345.5126 264634.5849 133831.3165 595724.852 236807.5018 375311.6735 424815.6913 418173.6548 235788.0011 518973.5576 0.73095345 0.509919207 0.257876947 1.147890568 0.456299745 0.723180725 0.818569049 0.805770638 0.454335289 1 18.98530151 -14 0.126696014 2.040940562 0.520537211 0.145683529 0.238851459 288.0343741 2.32015091 77.69213701 1.93961679 1.00E-14 14 -1.520403352 FFSTLYENCFHILGK ddPTM_HeLa_A485_30min_R1 1 FFSTLYENCFHILGK 15 0 Q9HAV4 Q9HAV4 XPO5 Exportin-5 0 0 84.753 0.0040384 15738000 8635 10943 7788.5 8812.2 14445 13670 17340 20105 8605 13504 FALSE FALSE TRUE 10555.82596 12222.68866 10669.79026 9293.588172 13006.80508 14385.74006 13635.16735 15174.21723 10331.94457 10137.70132 1.041244521 1.205666676 1.052486152 0.916735252 1.283013246 1.419033724 1.344995962 1.496810445 1.019160482 1 13.30744294 -5.852541238 8.846594527 1.298649015 1.065104287 0.259656087 0.163039387 0.328927705 28.67340332 0.049346357 0.056035852 1.40E-06 5.852541238 -0.233544728 FFSTLYENCFHILGK ddPTM_HeLa_A486_30min_R1 2 FFSTLYENCFHILGK 15 0 Q9HAV4 Q9HAV4 XPO5 Exportin-5 0 0 ; ; 127.71 2.29E-05 26286000 19348.3 24027.1 22961.3 10250.3 30304.6 26207.5 30041 30121 23731.5 27179.7 FALSE FALSE TRUE 17992.08408 22123.10509 31852.53028 23863.21642 26503.51449 22974.28511 22524.42406 23263.10584 25788.56553 20373.72621 0.883102281 1.085864454 1.56341211 1.171274031 1.300867314 1.127642772 1.105562322 1.141818909 1.2657756 1 14.31442224 FFT(ph)TPSK ddPTM_HeLa_A485_30min_R1 4 FFTTPSK 7 0 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 FFT(0.867)T(0.133)PSK;FFT(0.842)T(0.158)PSK;FFT(0.865)T(0.135)PSK;FFT(0.919)T(0.081)PSK ;;; 160.74 0.0014612 6355860000 11062800 10191300 7753020 12435000 14195900 11205200 14356100 15657600 9075500 17216800 TRUE FALSE FALSE 13523681.69 11383083.88 10621184.73 13114292.56 12782506.35 11791886.95 11288801.96 11817549.05 10896869.6 12924968.61 1.046322208 0.880704954 0.8217571 1.014647923 0.988977748 0.912333894 0.873410396 0.914319362 0.843086736 1 23.62365744 -6.506275978 23.37125861 0.899465217 0.943782576 0.0715191 0.071156978 890.3109447 1253272.365 0.026024789 0.022331671 3.12E-07 6.506275978 0.044317359 FFT(ph)TPSK ddPTM_HeLa_A486_30min_R1 3 FFTTPSK 7 0 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 FFT(0.655)T(0.345)PSK;FFT(0.867)T(0.133)PSK;FFT(0.853)T(0.147)PSK ;; 148.27 0.0050848 4708080000 12956100 12737800 7277700 5233140 11913600 12567300 15012500 14367500 9581800 15672700 TRUE FALSE FALSE 12047944.3 11728410.34 10095820.34 12183014.39 10419285.2 11016874.3 11256213.71 11096333.89 10412358.14 11748153.91 1.025518085 0.998319432 0.859353769 1.037015218 0.886887019 0.937753658 0.95812617 0.944517239 0.886297389 1 23.48593074 -4.541605008 24.99141124 0.938394118 1.018718473 0.25768594 0.050605656 244.1373798 325816.6732 0.011922994 0.031556605 2.87E-05 4.541605008 0.080324355 FFT(ph)TPSKS(ph)VR ddPTM_HeLa_A485_30min_R1 1 FFTTPSKSVR 10 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 2 0 FFT(0.5)T(0.5)PS(0.001)KS(0.999)VR 117.7 0.0003291 119360000 220260 206050 155290 280490 437250 330750 475830 541760 201700 405870 TRUE FALSE FALSE 269256.0771 230145.7551 212738.2332 295812.4585 393715.8547 348067.5586 374165.0333 408892.5106 242179.3399 304694.0785 0.883693173 0.755333862 0.698202716 0.970850697 1.292167727 1.142350912 1.228002314 1.341977214 0.794827852 1 18.21700194 -5.51305032 4.823072903 1.155229362 0.781752446 0.517752057 0.152274452 0.137409507 8.789055665 0.043468479 0.061090555 3.07E-06 5.51305032 -0.373476915 FFT(ph)TPSKS(ph)VR ddPTM_HeLa_A486_30min_R1 1 FFTTPSKSVR 10 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 2 0 FFT(0.5)T(0.5)PS(0.075)KS(0.925)VR 96.734 0.0019139 175450000 376070 418790 363750 325550 713250 617880 876110 837180 379710 612800 TRUE FALSE FALSE 349709.435 385603.5552 504603.7416 757896.8524 623787.5342 541652.2477 656898.0115 646572.3895 412623.5685 459350.8913 0.761312194 0.839453155 1.098514776 1.649930079 1.357976105 1.179168818 1.430057117 1.407578393 0.898275319 1 18.8092371 -4.876806371 3.544704286 1.30194746 0.793655368 0.445562007 0.207069043 0.189308384 4.545522753 0.054900676 0.13086657 1.33E-05 4.876806371 -0.508292092 FFTSS(ph)TSLTLK ddPTM_HeLa_A485_30min_R1 2 FFTSSTSLTLK 11 0 Q99567;J3KMX1;I3L245 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 FFTS(0.003)S(0.968)T(0.024)S(0.005)LTLK;FFTS(0.007)S(0.876)T(0.045)S(0.073)LTLK ; 241.15 7.90E-22 311210000 751700 752970 677730 796840 1084620 773140 1053550 1161600 691760 985150 TRUE FALSE FALSE 918913.0717 841023.2915 928450.5297 840369.3515 976631.4245 813620.4149 828450.4358 876715.7787 830589.8868 739570.2353 1.242496017 1.137178393 1.255391963 1.136294176 1.320539116 1.10012596 1.120178174 1.185439512 1.123071004 1 19.49632764 -9.144220453 0.276849808 0.933414085 1.221049287 0.481920267 0.062541798 6.135019989 0.671508833 0.494415495 0.090576973 7.17E-10 9.144220453 0.287635202 FFTSS(ph)TSLTLK ddPTM_HeLa_A486_30min_R1 2 FFTSSTSLTLK 11 0 Q99567;J3KMX1;I3L245 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 FFTS(0.004)S(0.985)T(0.002)S(0.008)LTLK;FFTS(0.006)S(0.99)T(0.003)S(0.001)LTLK ; 231.66 1.27E-18 321550000 582757 617764 400246 271737 586571 614798 721921 728562 441411 575504 TRUE FALSE FALSE 541908.7437 568810.1308 555231.9702 632617.4688 512997.7956 538950.4736 541288.7301 562684.337 479672.8609 431394.0525 1.256180377 1.318539575 1.287064499 1.466449213 1.189162884 1.249322911 1.254743145 1.304339579 1.111913477 1 18.71864676 -7.921608446 3.079356137 1.001199466 1.292069677 0.665972777 0.068583258 0.134536083 2.609572826 0.066874717 0.017970952 1.20E-08 7.921608446 0.290870212 FFTT(ph)PSK ddPTM_HeLa_A486_30min_R1 1 FFTTPSK 7 0 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 FFT(0.454)T(0.546)PSK 119.86 0.010091 623390000 1863100 1800900 1043800 751560 1697300 1826200 2146500 2041000 1407400 2166300 TRUE FALSE FALSE 1732506.311 1658190.125 1447987.314 1749669.662 1484408.807 1600902.011 1609422.997 1576308.855 1529394.565 1623844.38 1.066916469 1.021150885 0.891703252 1.077486047 0.914132429 0.985871572 0.991118987 0.970726551 0.941835674 1 20.63098195 -4.528988296 24.99885029 0.972360438 1.055475103 0.285272136 0.048281665 152.6102586 624448.1981 0.011399466 0.030328461 2.96E-05 4.528988296 0.083114665 FFTT(ph)PSKS(ph)VR ddPTM_HeLa_A485_30min_R1 1 FFTTPSKSVR 10 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 2 0 FFT(0.44)T(0.559)PS(0.071)KS(0.929)VR 64.224 0.018908 48653000 61230 49948 49806 70259 111410 69660 123230 133090 48230 94841 TRUE FALSE FALSE 74850.40226 55788.98411 68231.312 74097.07126 100317.6292 73307.28989 96900.9038 100449.4688 57909.31861 71198.88412 1.051286171 0.783565428 0.958319963 1.040705514 1.408977549 1.029612905 1.36098908 1.410829258 0.813345874 1 16.11956701 -5.52889117 24.77839058 1.196471767 0.930175432 0.234803328 0.191926208 172.7415069 711896.9974 0.054798133 0.070951878 2.96E-06 5.52889117 -0.266296336 FFTT(ph)PSKS(ph)VR ddPTM_HeLa_A486_30min_R1 2 FFTTPSKSVR 10 1 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 2 0 FFT(0.438)T(0.562)PS(0.028)KS(0.972)VR;FFT(0.167)T(0.833)PS(0.056)KS(0.944)VR ; 83.692 0.0045914 173275000 390270 441200 380308 339271 716690 647120 900480 868800 392370 639790 TRUE FALSE FALSE 362914.0884 406237.7052 527573.4426 789840.0338 626796.0573 567284.9138 675170.3797 670993.2058 426380.9475 479582.4197 0.756729341 0.847065465 1.100068353 1.646932835 1.306962123 1.182872621 1.407829712 1.399119689 0.889067093 1 18.87141925 -4.857442962 3.488070593 1.28804089 0.791447668 0.436639185 0.204257107 0.192604781 4.521850115 0.053988714 0.131596244 1.39E-05 4.857442962 -0.496593222 FFTTGS(ph)DSESESSLSGEELVTKPVGGNYGK ddPTM_HeLa_A486_30min_R1 1 FFTTGSDSESESSLSGEELVTKPVGGNYGK 30 1 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 FFT(0.001)T(0.009)GS(0.468)DS(0.373)ES(0.124)ES(0.004)S(0.021)LSGEELVTKPVGGNYGK 208.37 1.99E-29 159680000 125440 111910 65283 42639 116330 138360 154750 142670 106130 159510 TRUE FALSE FALSE 116647.3038 103041.844 90562.32594 99265.74686 101738.8067 121290.5499 116029.9132 110187.1555 115329.4339 119567.6578 0.97557572 0.861786924 0.757414903 0.830205665 0.850889016 1.01440935 0.970412195 0.921546491 0.96455376 1 16.86746768 -6.246324284 24.00500253 0.969045251 0.848723548 0.536954822 0.054992062 404.7333218 642776.0618 0.019296641 0.01921323 5.67E-07 6.246324284 -0.120321703 FFTVEPQHIPCVLMAFLDHR ddPTM_HeLa_A485_30min_R1 2 FFTVEPQHIPCVLMAFLDHR 20 0 O43592 O43592 XPOT Exportin-T 0 0 ; ; 108.17 1.35E-05 5219300 4150.4 4365.8 3960 4914 5413.3 3100 5415.1 4823.7 3247.8 6355 FALSE FALSE TRUE 5073.642161 4876.342333 5424.968789 5182.439377 4874.332845 3262.311206 4258.119648 3640.680012 3899.603669 4770.815455 1.063474831 1.022119254 1.137115623 1.086279573 1.021698049 0.683805785 0.892534974 0.763114827 0.817387238 1 12.22002017 -6.097208758 5.968143326 0.821161099 1.07497793 0.677385979 0.081514351 0.125806398 6.358082398 0.025430872 0.025564724 7.99E-07 6.097208758 0.253816831 FFTVEPQHIPCVLMAFLDHR ddPTM_HeLa_A486_30min_R1 2 FFTVEPQHIPCVLMAFLDHR 20 0 O43592 O43592 XPOT Exportin-T 0 0 ; ; 137.05 1.09E-08 6506800 4431.5 4529.3 4227.6 1697.28 5423 4411.3 5325.4 4771.4 4256.3 3774.2 FALSE FALSE TRUE 4120.874734 4170.381773 5864.639939 3951.353616 4742.796773 3867.078657 3992.928594 3685.056379 4625.239511 2829.115754 1.456594601 1.474093722 2.072958638 1.396674424 1.676423726 1.366885979 1.41136982 1.30254705 1.634871074 1 11.46613549 -6.269852488 23.18948803 1.366308619 1.620775673 0.260196577 0.227741679 356.6130537 982945.9975 0.077365677 0.069472055 5.37E-07 6.269852488 0.254467054 FFVGGNWK ddPTM_HeLa_A485_30min_R1 2 FFVGGNWK 8 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 170.31 7.76E-05 210257000 297400 363760 314060 312690 469520 369170 485960 492890 326880 444910 FALSE FALSE TRUE 363555.604 406298.5677 430243.8631 329771.4629 422772.9402 388499.1704 382130.6761 372007.9547 392481.8177 334002.125 1.088482907 1.216455038 1.288147083 0.987333428 1.265779193 1.163163768 1.144096542 1.113789185 1.175087786 1 18.34949776 -13.99999404 0.251427887 0.000234671 1.176308343 0.252575963 0.082682776 252.6947556 2.505418932 129.7109684 0.114919639 1.00E-14 13.99999404 1.176073673 FFVGGNWK ddPTM_HeLa_A486_30min_R1 2 FFVGGNWK 8 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 158.53 0.00027005 260670000 591890 582160 386950 173895 604840 528660 615260 616610 483850 640590 FALSE FALSE TRUE 550401.5675 536027.5214 536787.4029 404836.3482 528975.3273 463439.3042 461315.4404 476221.3635 525790.5076 480182.0945 1.146235093 1.116300519 1.117883005 0.843089221 1.10161402 0.965132414 0.960709376 0.991751606 1.094981495 1 18.87322208 -5.043959597 24.99694744 0.994308203 1.127723962 0.441687595 0.06856313 382.9889969 217780.3362 0.017770223 0.030781068 9.04E-06 5.043959597 0.133415759 FFYSDQNVDSRDPVQLNLLYVQAR ddPTM_HeLa_A485_30min_R1 1 FFYSDQNVDSRDPVQLNLLYVQAR 24 1 Q9Y490;Q9Y4G6 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 0 0 123.14 2.97E-11 12075000 2832.9 2349.9 2758.1 3357.3 4658.5 2345.4 4014.8 4460.7 2202.3 3906 FALSE FALSE TRUE 3463.068832 2624.700364 3778.435964 3540.700798 4194.683383 2468.201517 3157.005182 3366.706331 2644.281409 2932.306085 1.181005233 0.895097677 1.288554419 1.207479948 1.43050666 0.841727107 1.0766288 1.148142872 0.901775372 1 11.51781999 -6.276852802 24.99680005 1.008099652 1.188836901 0.325230643 0.147783006 1199.259021 1944899.608 0.05379063 0.047603449 5.29E-07 6.276852802 0.180737249 FGANAILGVSLAVCK ddPTM_HeLa_A485_30min_R1 1 FGANAILGVSLAVCK 15 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5;A0A2R8Y879;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 0 0 117.2 0.0005717 16795000 16950 17328 15857 18912 23001 16105 23808 25905 13176 25795 FALSE FALSE TRUE 20720.46902 19354.35887 21723.16416 19945.11467 20710.93968 16948.2329 18721.22631 19551.75813 15820.30234 19364.78122 1.070007907 0.999461788 1.121787224 1.0299685 1.06951581 0.875209108 0.966766735 1.009655514 0.816962617 1 14.24114758 -6.246486384 24.80010078 0.93638776 1.056857853 0.51160285 0.06075284 609.3853326 1010688.461 0.01924184 0.019164434 5.67E-07 6.246486384 0.120470092 FGANAILGVSLAVCK ddPTM_HeLa_A486_30min_R1 1 FGANAILGVSLAVCK 15 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5;A0A2R8Y879;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P09104-2;P09104;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 0 0 248.77 8.85E-33 13902000 33472 34592 25118 28277 37241 37105 51276 42467 31525 46113 FALSE FALSE TRUE 31125.78565 31850.80394 34844.36228 65830.28504 32569.88652 32527.36236 38446.20246 32798.19115 34257.61238 34566.00465 0.900473918 0.921448812 1.00805293 1.904480593 0.942251986 0.941021755 1.112254738 0.948856875 0.991078163 1 15.07706624 FGAVFLWDSGSSVGEITGHNK ddPTM_HeLa_A485_30min_R1 1 FGAVFLWDSGSSVGEITGHNK 21 0 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 0 191.59 3.30E-24 12053000 12470 11006 11354 11884 16360 11831 16801 17256 12044 21747 FALSE FALSE TRUE 15243.90848 12293.05596 15554.31708 12533.19283 14731.14096 12450.45287 13211.3291 13023.93894 14461.12033 16325.87312 0.933726997 0.752980001 0.952740289 0.767688976 0.902318721 0.76262095 0.809226496 0.797748387 0.885779291 1 13.99487253 -8.063485823 5.242175482 0.999976804 0.83308705 0.34982951 0.06836183 0.372455288 27.47526137 0.06040961 0.015723471 8.64E-09 8.063485823 -0.166889754 FGDES(ph)PLLTMR ddPTM_HeLa_A485_30min_R1 4 FGDESPLLTMR 11 0 H0YJ41;Q9P203-5;Q9P203 H0YJ41 BTBD7 BTB/POZ domain-containing protein 7 1 0 FGDES(1)PLLTMR;FGDES(1)PLLTMR;FGDES(1)PLLTMR;FGDES(1)PLLTMR ;;; 177.16 5.63E-09 111562000 152310 197356 168519 185676 216702 173127 219935 220854 169697 257061 TRUE FALSE FALSE 186190.834 220435.0674 230861.1908 195819.0097 195126.388 182191.662 172944.0905 166689.2102 203753.6313 192980.4236 0.964817211 1.142266471 1.196293316 1.014709192 1.011120115 0.94409401 0.896174272 0.863762278 1.055825392 1 17.55809498 -5.762392766 1.984741869 0.942598133 1.102651277 0.391267126 0.076100966 0.301082034 2.442633037 0.026414588 0.034347204 1.73E-06 5.762392766 0.160053144 FGDES(ph)PLLTMR ddPTM_HeLa_A486_30min_R1 4 FGDESPLLTMR 11 0 H0YJ41;Q9P203-5;Q9P203 H0YJ41 BTBD7 BTB/POZ domain-containing protein 7 1 0 FGDES(1)PLLTMR;FGDES(1)PLLTMR;FGDES(1)PLLTMR;FGDES(1)PLLTMR ;;; 193.15 4.64E-11 118272000 187707 185861 127019 69768.6 188576 169472 205677 193553 147862 206567 TRUE FALSE FALSE 174549.7086 171132.6975 176204.1585 162424.8267 164923.0397 148564.2677 154214.4392 149485.2071 160678.7972 154841.2787 1.127281498 1.105213667 1.13796631 1.048976268 1.065110293 0.959461643 0.995951729 0.965409279 1.037700015 1 17.2404306 -5.733119994 1.438816188 0.990719346 1.122096487 0.795721569 0.027710553 0.164215981 0.708291144 0.009924772 0.014125444 1.85E-06 5.733119994 0.131377141 FGDILHVINAS(ph)DDEWWQAR ddPTM_HeLa_A485_30min_R1 1 FGDILHVINASDDEWWQAR 19 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 FGDILHVINAS(1)DDEWWQAR 148.89 1.24E-08 22693000 20590 22640 21450 19759 25288 23750 26783 30989 21427 28214 TRUE FALSE FALSE 25170.17447 25287.55106 29385.24761 20838.38414 22770.23793 24993.51328 21060.59325 23388.89916 25727.20236 21180.76904 1.188350358 1.193892016 1.387355084 0.983835105 1.075043021 1.180009717 0.994326184 1.10425165 1.214649115 1 14.37046735 -5.269335214 24.97744535 1.083748959 1.250268442 0.459296422 0.088144857 544.5301391 1722550.068 0.024662361 0.03731504 5.38E-06 5.269335214 0.166519483 FGDILHVINAS(ph)DDEWWQAR ddPTM_HeLa_A486_30min_R1 1 FGDILHVINASDDEWWQAR 19 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 FGDILHVINAS(1)DDEWWQAR 99.999 0.00017829 13813000 23568 23516 19705 9443.9 30262 23917 28432 23387 25283 30608 TRUE FALSE FALSE 21916.00491 21652.50652 27335.30372 21985.87647 26466.25778 20966.36371 21318.01288 18062.29063 27474.5508 22943.55758 0.955213891 0.943729256 1.191415221 0.958259258 1.153537663 0.913823571 0.929150277 0.787248907 1.197484335 1 14.48580149 -6.309698025 24.9984344 0.949970021 1.038881948 0.078149166 0.122862233 912.167108 472508.4158 0.041940335 0.036987978 4.90E-07 6.309698025 0.088911927 FGESEEVEMEVES(ph)DEEDDKQEK ddPTM_HeLa_A485_30min_R1 8 FGESEEVEMEVESDEEDDKQEK 22 1 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGES(0.001)EEVEMEVES(0.999)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK ;;;;;;; 292.1 1.48E-87 11664560000 2088018.1 969671 768686 4988210 1800623.1 1515954 3462286.3 2200912.3 1137575.4 6475264 TRUE FALSE FALSE 2552490.523 1083065.588 1053054.939 5260703.281 1621346.742 1595327.007 2722540.548 1661135.108 1365876.348 4861099.853 0.525084981 0.22280258 0.216628946 1.082204324 0.333534959 0.328182316 0.560066781 0.341720014 0.280980928 1 22.21285134 -10.16310373 4.528220051 1.000090925 0.4340811 0.329734443 0.242783067 142441302.4 106564841.3 117558.618 0.059252634 6.87E-11 10.16310373 -0.566009824 FGESEEVEMEVES(ph)DEEDDKQEK ddPTM_HeLa_A486_30min_R1 15 FGESEEVEMEVESDEEDDKQEK 22 1 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGES(0.002)EEVEMEVES(0.998)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK ;;;;;;;;;;;;;; 266.38 5.92E-60 30460960000 7279334 6117495 2239569 9778510 4775344 9815104 13898363 11618025 5120680 19949430 TRUE FALSE FALSE 6769090.277 5632722.417 3106790.095 22764865.46 4176375.827 8604216.261 10420845.58 8972854.327 5564544.665 14953962.88 0.452661969 0.376670884 0.207756975 1.522329943 0.279282212 0.575380341 0.696861806 0.600031871 0.372111708 1 23.83402452 -11.5168827 2.118629081 6.306189437 0.573752274 0.121227542 0.350781546 24618173.07 1309261.367 629113792.9 0.086837433 3.04E-12 11.5168827 -5.732437163 FGESTTGFNFS(ph)FK ddPTM_HeLa_A486_30min_R1 2 FGESTTGFNFSFK 13 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FGESTTGFNFS(1)FK;FGESTTGFNFS(1)FK ; 246.84 2.83E-35 316730000 358320 323930 183699 240227 296780 363270 538620 467940 251765 531750 TRUE FALSE FALSE 333203.6184 298260.6071 254832.1724 559260.5964 259555.085 318453.4409 403851.5791 361400.2771 273588.1929 398596.3389 0.835942496 0.748277337 0.639323916 1.403075096 0.651172777 0.798937195 1.013184366 0.90668238 0.686379091 1 18.60456893 -1.000053502 0.020175502 1.545312145 7.96E-11 0.025339097 0.216008474 16386.62242 25.53502322 723.4293093 1313.338997 0.099987681 1.000053502 -1.545312145 FGEYNSNMS(ph)PEEK ddPTM_HeLa_A485_30min_R1 3 FGEYNSNMSPEEK 13 0 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 1 0 FGEYNSNMS(1)PEEK;FGEYNSNMS(1)PEEK;FGEYNS(0.06)NMS(0.94)PEEK ;; 268.92 4.42E-42 1813450000 1157810 979540 576109 1825260 1482630 1091690 1893670 1818760 864690 2429240 TRUE FALSE FALSE 1415360.84 1094088.682 789235.693 1924969.332 1335014.151 1148849.2 1489071.935 1372706.258 1038225.352 1823675.175 0.776103584 0.59993616 0.432772077 1.055543969 0.732046019 0.629963722 0.816522567 0.752714232 0.569303879 1 20.79841736 -11.10974977 2.463428515 1.541880668 0.709241687 0.233909017 0.158923128 43957449.94 15127115.99 133045660.1 0.041241365 7.77E-12 11.10974977 -0.832638981 FGEYNSNMS(ph)PEEK ddPTM_HeLa_A486_30min_R1 4 FGEYNSNMSPEEK 13 0 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 1 0 FGEYNS(0.002)NMS(0.998)PEEK;FGEYNSNMS(1)PEEK;FGEYNS(0.001)NMS(0.999)PEEK;FGEYNSNMS(1)PEEK ;;; 310.74 2.65E-68 1817660000 1450670 1295420 622620 776190 1217160 1539950 2152060 1850990 1069060 2271350 TRUE FALSE FALSE 1348985.524 1192766.201 863715.1383 1807009.546 1064492.443 1349966.626 1613591.826 1429559.984 1161726.982 1702589.176 0.792314167 0.700560193 0.507295095 1.061330338 0.625219788 0.792890408 0.94772823 0.83963883 0.682329594 1 20.69929893 -13.99999997 0.078418396 1.712642275 0.550683906 0.179595497 0.149244687 448.2902493 2.491128705 56.24310015 5.483392614 1.00E-14 13.99999997 -1.161958369 FGFGAKS(ph)PK ddPTM_HeLa_A485_30min_R1 2 FGFGAKSPK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FGFGAKS(1)PK;FGFGAKS(1)PK ; 60.49 0.014922 1478810000 1331180 2034650 1434250 1698810 3492100 2900900 4489000 6533000 1652190 2965900 TRUE FALSE FALSE 1627296.398 2272584.618 1964838.759 1791611.689 3144414.262 3052786.638 3529888.478 4930771.507 1983769.378 2226555.713 0.730858154 1.020672694 0.882456589 0.804656123 1.412232465 1.371080283 1.585358254 2.21452869 0.890958787 1 21.08638228 -5.810019908 5.358729136 1.485926291 0.871998079 0.37047246 0.345501978 0.190160189 12.05395456 0.105598356 0.122769722 1.55E-06 5.810019908 -0.613928212 FGFGAKS(ph)PK ddPTM_HeLa_A486_30min_R1 2 FGFGAKSPK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FGFGAKS(1)PK;FGFGAKS(1)PK ; 64.827 0.01064 1302170000 2350500 2055970 1785150 2493300 4442000 2790400 4765600 5360100 1842680 3626700 TRUE FALSE FALSE 2185742.088 1893047.449 2476407.888 5804528.404 3884842.94 2446148.819 3573196.475 4139722.24 2002404.986 2718550.714 0.804010047 0.696344357 0.910929443 2.135155461 1.429012495 0.899798855 1.314375508 1.522768076 0.736570768 1 21.37440631 -5.018020283 24.61320275 1.320195516 0.763541885 0.275091607 0.366483275 727.8116798 994093.0912 0.100522885 0.178812588 9.59E-06 5.018020283 -0.556653631 FGGEHVPNS(ph)PFQVTALAGDQPSVQPPLR ddPTM_HeLa_A485_30min_R1 2 FGGEHVPNSPFQVTALAGDQPSVQPPLR 28 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 1 0 FGGEHVPNS(1)PFQVTALAGDQPSVQPPLR;FGGEHVPNS(0.991)PFQVT(0.009)ALAGDQPSVQPPLR ; 127.31 4.65E-06 360740000 84316 100052 89397 71306 128095 93297 123829 128557 83643 117395 TRUE FALSE FALSE 103071.8033 111752.2111 122468.6704 75201.26622 115341.412 98181.88666 97371.92256 97028.19418 100429.3829 88130.58699 1.169534969 1.268029805 1.389627309 0.853293604 1.308755745 1.114050071 1.104859571 1.100959355 1.139551957 1 16.42735519 -1.000000045 0.085696246 0.894069678 1.867557866 0.177622949 0.132366756 293.8455196 1.82562981 2.88367166 33.70291026 0.09999999 1.000000045 0.973488188 FGGEHVPNS(ph)PFQVTALAGDQPSVQPPLR ddPTM_HeLa_A486_30min_R1 2 FGGEHVPNSPFQVTALAGDQPSVQPPLR 28 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 1 0 FGGEHVPNS(1)PFQVTALAGDQPSVQPPLR;FGGEHVPNS(1)PFQVTALAGDQPSVQPPLR ; 213.06 2.53E-29 350680000 183980 187189 177767 69155 247000 192046 238890 235230 160856 203350 TRUE FALSE FALSE 171083.9521 172355.4619 246603.1432 160996.3349 216018.9568 168353.3171 179117.1953 181673.264 174799.1276 152429.8364 1.122378375 1.130719982 1.61781413 1.056199617 1.417169774 1.10446433 1.175079627 1.191848449 1.146751395 1 17.2177858 -6.309075391 24.90604205 1.138834934 1.268754693 0.168675426 0.159427757 800.646114 418607.8231 0.054784768 0.048315729 4.91E-07 6.309075391 0.129919759 FGGS(ph)GSQVDSAR ddPTM_HeLa_A486_30min_R1 1 FGGSGSQVDSAR 12 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 FGGS(0.971)GS(0.028)QVDSAR 151.54 2.17E-06 0 248210 249130 206870 86518 299590 223650 283540 282160 218220 272100 TRUE FALSE FALSE 230811.7608 229388.0315 286975.6042 201418.2764 262012.6286 196058.3369 212595.293 217918.3275 237135.4853 203964.3889 1.131627741 1.124647458 1.406988767 0.987516877 1.284599876 0.961238077 1.04231574 1.068413602 1.162631803 1 17.63795776 -6.264090353 24.99910421 1.050907941 1.184738624 0.276549438 0.113221173 338.8686659 3195576.416 0.037892124 0.034903094 5.44E-07 6.264090353 0.133830684 FGGSGS(ph)QVDSAR ddPTM_HeLa_A485_30min_R1 1 FGGSGSQVDSAR 12 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 FGGS(0.111)GS(0.889)QVDSAR 138.35 8.28E-06 260920000 144940 190630 173840 178340 240590 178430 244120 238140 156870 230380 TRUE FALSE FALSE 177181.403 212922.5202 238150.6501 188082.2626 216636.0148 187772.3189 191961.7677 179735.7916 188352.3701 172950.5058 1.024463052 1.231118228 1.3769873 1.087491833 1.252589657 1.085699738 1.109923136 1.039232529 1.089053595 1 17.39999971 -6.55656711 1.431960265 1.050378176 1.203058269 0.316872558 0.09364844 0.505565295 2.108682782 0.049809128 0.035268606 2.78E-07 6.55656711 0.152680093 FGHVDQENS(ph)PSFMFQGSSNTEFK ddPTM_HeLa_A485_30min_R1 2 FGHVDQENSPSFMFQGSSNTEFK 23 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FGHVDQENS(0.995)PS(0.005)FMFQGSSNTEFK;FGHVDQENS(1)PSFMFQGSSNTEFK ; 291.08 4.21E-89 471820000 326950 349220 257160 338250 454450 342040 450120 488440 271150 444470 TRUE FALSE FALSE 399678.8995 390058.2412 352294.1853 356727.741 409203.3623 359948.6855 353948.1849 368649.3242 325567.3179 333671.8089 1.1978204 1.168987702 1.055810458 1.069097633 1.226364804 1.078750664 1.060767423 1.104826103 0.975711191 1 18.34807028 -7.344530657 0.824582756 0.989884515 1.13682533 0.46776449 0.056643352 0.601738595 0.76465281 0.054266494 0.023191449 4.52E-08 7.344530657 0.146940815 FGHVDQENS(ph)PSFMFQGSSNTEFK ddPTM_HeLa_A486_30min_R1 1 FGHVDQENSPSFMFQGSSNTEFK 23 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FGHVDQENS(0.942)PS(0.058)FMFQGSSNTEFK 300.42 1.88E-89 233260000 228360 174260 117290 74558 198390 187580 218680 209820 135450 219200 TRUE FALSE FALSE 212353.1433 160451.003 162707.8291 173574.792 173506.0763 164438.2868 163963.951 162048.5663 147190.9151 164310.8932 1.292386275 0.976508616 0.990243714 1.056380308 1.055962102 1.00077532 0.997888501 0.986231425 0.895807406 1 17.3260686 -4.258748448 24.75188722 0.998964794 1.292386396 0.815369803 0.042349343 94.99310277 873715.0639 0.01119377 0.07493087 5.51E-05 4.258748448 0.293421602 FGLALAVAGGVVNSALYNVDAGHR ddPTM_HeLa_A486_30min_R1 1 FGLALAVAGGVVNSALYNVDAGHR 24 0 D6RBK0;C9JZ20;E7ESE2;E9PCW0;C9JW96;P35232-2;P35232 D6RBK0 PHB Prohibitin 0 0 115.46 4.51E-08 3607000 431.73 685.69 857.41 638.91 1111.2 1611.6 1701.9 769.8 1112.7 1017.5 FALSE FALSE TRUE 401.4679565 631.3534272 1189.422114 1487.414769 971.8229345 1412.777178 1276.066619 594.5333446 1209.149732 762.7113772 0.526369435 0.827775022 1.559465546 1.950167276 1.274168661 1.852309038 1.673066192 0.779499772 1.585330661 1 9.57499341 -4.648141317 3.951803238 1.483900574 0.59026252 0.458372206 0.345089785 0.18421301 5.152272531 0.09066174 0.272807654 2.25E-05 4.648141317 -0.893638053 FGLGS(ph)PLPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 FGLGSPLPSPR 11 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18;G3V5H0 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 2 0 FGLGS(1)PLPS(1)PR 97.463 0.002518 44225000 176970 200870 182040 59573 225230 152570 199290 161330 144640 171470 TRUE FALSE FALSE 164565.3169 184952.3296 252530.7632 138688.9547 196979.5532 133747.4646 149425.5341 124598.6808 157177.5117 128532.7959 1.280337175 1.43895049 1.964718509 1.079016088 1.532523679 1.040570725 1.162547917 0.96939213 1.222859197 1 16.97177699 -6.108418323 1.343405759 1.069379769 1.506096268 0.392679708 0.226715736 0.434406689 1.603142785 0.098881522 0.101546568 7.79E-07 6.108418323 0.436716499 FGLGS(ph)PLPSPR ddPTM_HeLa_A485_30min_R1 2 FGLGSPLPSPR 11 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18;G3V5H0 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 FGLGS(1)PLPSPR;FGLGS(1)PLPSPR ; 160.38 7.70E-08 168775000 147488 207478 188826 173737 235980 230090 247420 262850 165178 229210 TRUE FALSE FALSE 180296.1968 231740.7473 258680.5951 183227.8124 212485.0026 242137.1566 194556.6958 198385.6254 198327.7095 172072.1653 1.047794084 1.34676487 1.503326204 1.064831212 1.234859817 1.40718376 1.13066919 1.152921073 1.152584494 1 17.39265422 -7.805685715 0.752820251 1.005886227 1.270291748 0.246166884 0.136792756 0.906225869 1.159855178 0.133762817 0.053298739 1.56E-08 7.805685715 0.264405521 FGLGS(ph)PLPSPR ddPTM_HeLa_A486_30min_R1 2 FGLGSPLPSPR 11 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18;G3V5H0 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 FGLGS(1)PLPSPR;FGLGS(1)PLPSPR ; 165.35 5.59E-08 219170000 314920 387730 324460 138817 440970 318890 384200 365930 298470 382880 TRUE FALSE FALSE 292845.7342 357004.8627 450099.6013 323172.9914 385659.4307 279548.594 288069.0963 282615.7272 324341.6199 287004.3559 1.020352926 1.243900503 1.568267492 1.126021208 1.343740688 0.97402213 1.003709841 0.984708843 1.130093022 1 18.13071311 -6.26588313 24.87443688 1.016626254 1.269168761 0.429063868 0.13935992 348.569928 1951156.062 0.048841026 0.04455119 5.42E-07 6.26588313 0.252542507 FGLGT(ph)PEK ddPTM_HeLa_A485_30min_R1 2 FGLGTPEK 8 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 FGLGT(1)PEK;FGLGT(1)PEK ; 117.52 0.0042938 342230000 1702500 1190610 910360 2368700 1680630 1255190 1946110 1418530 1261190 3182800 TRUE FALSE FALSE 2081215.251 1329841.483 1247140.047 2498096.083 1513300.576 1320909.808 1530307.7 1070633.293 1514299.265 2389386.535 0.871024935 0.556561889 0.521949893 1.045496845 0.633342724 0.552823827 0.640460502 0.448078734 0.633760692 1 21.18820883 -10.02556764 4.849480096 1.000004411 0.650271016 0.274211814 0.167695121 228664372.8 1.344586761 16801.32625 0.041214989 9.43E-11 10.02556764 -0.349733395 FGLGT(ph)PEK ddPTM_HeLa_A486_30min_R1 4 FGLGTPEK 8 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 FGLGT(1)PEK;FGLGT(1)PEK;FGLGT(1)PEK;FGLGT(1)PEK ;;; 140.49 0.0020407 852920000 2757090 2701600 1540050 1100090 2387100 2969400 3393150 3058820 2271450 3516120 TRUE FALSE FALSE 2563832.229 2487515.377 2136398.604 2561065.115 2087687.659 2603065.619 2544147.981 2362393.46 2468341.115 2635660.666 0.972747464 0.943791972 0.810574226 0.971697589 0.792092733 0.987633064 0.965279034 0.896319276 0.936517036 1 21.32973321 FGLGT(ph)PEKNTK ddPTM_HeLa_A485_30min_R1 1 FGLGTPEKNTK 11 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 FGLGT(1)PEKNTK 71.879 0.01468 370170000 765840 769480 409000 917610 1074600 1055100 1677100 1897300 651830 1395900 TRUE FALSE FALSE 936198.4659 859463.9924 560306.1199 967736.7108 967609.0509 1110343.405 1318773.884 1431984.2 782646.3021 1047927.82 0.893380678 0.820155717 0.53468007 0.923476496 0.923354675 1.059560958 1.258458703 1.366491254 0.746851345 1 19.99910792 -5.952053138 1.754888231 1.121625266 0.763935757 0.373262838 0.180229873 0.348159064 2.18570442 0.068302118 0.078154141 1.12E-06 5.952053138 -0.357689509 FGLGT(ph)PEKNTK ddPTM_HeLa_A486_30min_R1 1 FGLGTPEKNTK 11 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 FGLGT(1)PEKNTK 95.631 0.0023791 298990000 1332400 963580 458470 602610 1056900 1075700 1559500 1494800 774760 1880400 TRUE FALSE FALSE 1239005.641 887222.4115 636001.8623 1402906.534 924333.7468 942991.0709 1169296.605 1154466.671 841916.8206 1409535.601 0.879016919 0.629443067 0.451213763 0.995296985 0.655771835 0.669008339 0.829561598 0.819040449 0.597300856 1 20.42678849 -10.65377305 2.5419171 1.036271715 0.724302865 0.232225891 0.149962801 20073182.39 16657001.77 4750587.88 0.039075066 2.22E-11 10.65377305 -0.311968851 FGLHGS(ph)SGK ddPTM_HeLa_A485_30min_R1 2 FGLHGSSGK 9 0 Q9NV70-2 Q9NV70-2 EXOC1 Exocyst complex component 1 1 0 FGLHGS(0.995)S(0.005)GK;FGLHGS(0.922)S(0.078)GK ; 130.01 0.0001798 207060000 337360 307498 223206 440810 411140 284601 456810 364266 308826 622400 TRUE FALSE FALSE 412404.5681 343457.2162 305779.1878 464890.3341 370205.458 299502.2683 359208.8117 274929.1924 370804.5455 467247.1344 0.882626212 0.735065431 0.654427101 0.994955988 0.792311885 0.640993269 0.768776917 0.588402094 0.793594049 1 18.83382629 -4.253332781 22.96166249 0.760795234 0.8826264 0.0498335 0.130472625 946.4837077 2680676.571 0.031849821 0.324199027 5.58E-05 4.253332781 0.121831167 FGLHGS(ph)SGK ddPTM_HeLa_A486_30min_R1 2 FGLHGSSGK 9 0 Q9NV70-2 Q9NV70-2 EXOC1 Exocyst complex component 1 1 0 FGLHGS(0.896)S(0.104)GK;FGLHGS(0.992)S(0.008)GK ; 143.24 8.19E-05 280020000 764130 803000 414440 237610 664460 816390 885480 872690 633170 908330 TRUE FALSE FALSE 710568.433 739367.3555 574922.2671 553168.0881 581117.231 715672.1022 663923.5383 673997.5377 688053.6854 680878.2558 1.043605706 1.085902434 0.844383357 0.812433182 0.853481846 1.051101421 0.975098753 0.989894349 1.010538491 1 19.37703734 -6.2726084 24.91099635 1.002805756 0.925674362 0.180751117 0.082194231 1501.732705 3349402.12 0.03289938 0.029278633 5.34E-07 6.2726084 -0.077131394 FGLNVSSISR ddPTM_HeLa_A485_30min_R1 1 FGLNVSSISR 10 0 H0YHG0;F8VZQ9;P82979 H0YHG0 SARNP SAP domain-containing ribonucleoprotein 0 0 98.033 0.024073 25772000 9181.6 10994 12842 12738 15193 11144 14280 15973 11577 15999 FALSE FALSE TRUE 11224.01524 12279.65266 17592.7902 13433.84469 13680.33157 11727.48261 11228.96134 12055.59671 13900.39771 12010.74374 0.934497937 1.022389032 1.464754438 1.118485664 1.139007864 0.976416021 0.934909743 1.003734404 1.157330304 1 13.55203787 -6.247604213 19.43911036 1.009738518 1.1468355 0.15884977 0.138251787 77.90757558 109461.9639 0.048416379 0.047949413 5.65E-07 6.247604213 0.137096983 FGLNVSSISR ddPTM_HeLa_A486_30min_R1 2 FGLNVSSISR 10 0 H0YHG0;F8VZQ9;P82979 H0YHG0 SARNP SAP domain-containing ribonucleoprotein 0 0 ; ; 125.57 0.0044976 52836000 21122.4 23906 23464 9056.3 32005 20516.5 24721 26595 22436 23957 FALSE FALSE TRUE 19641.82884 22011.6015 32549.88919 21083.52408 27990.63447 17985.38283 18535.54433 20539.89906 24380.77054 17958.01127 1.093764145 1.22572601 1.812555338 1.174045598 1.558671172 1.001524198 1.03216019 1.143773593 1.357654263 1 14.13233997 -6.270885945 24.9665586 1.111329407 1.37814521 0.277589884 0.214361944 938.3406044 2479956.596 0.075732957 0.067653602 5.36E-07 6.270885945 0.266815803 FGLSVGHHLGK ddPTM_HeLa_A485_30min_R1 3 FGLSVGHHLGK 11 0 B4DLR8;P15559-3;P15559-2;P15559;H3BNV2 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 ;; ;; 158.79 4.63E-06 719830000 813510 1500690 1255710 395510 1743910 1019450 1459690 1558920 1034950 982740 FALSE FALSE TRUE 994472.4929 1676182.641 1720249.383 417115.7098 1570280.197 1072826.826 1147815.307 1176592.426 1242654.972 737761.004 1.34796023 2.271985958 2.331716334 0.565380533 2.128440225 1.454165807 1.555809132 1.594815149 1.684359793 1 19.49279401 -11.5581648 0.150054102 1.54E-12 1.925906772 0.142464043 0.489145087 112.679015 2.031575355 41.87637187 2.872705087 2.77E-12 11.5581648 1.925906772 FGLSVGHHLGK ddPTM_HeLa_A486_30min_R1 2 FGLSVGHHLGK 11 0 B4DLR8;P15559-3;P15559-2;P15559;H3BNV2 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 ; ; 161.17 3.94E-06 419080000 954560 976810 706330 80999 1027050 725350 798210 750790 860150 434730 FALSE FALSE TRUE 887650.2734 899404.0181 979839.8922 188569.7655 898227.8121 635863.6918 598489.4154 579851.5066 934708.4946 325870.7784 2.723933326 2.760002055 3.006835707 0.578664237 2.756392631 1.951275579 1.836585098 1.779390928 2.868340939 1 18.31394046 FGLYLPLFKPSVSTSK ddPTM_HeLa_A485_30min_R1 1 FGLYLPLFKPSVSTSK 16 1 Q9UJS0;Q9UJS0-2 Q9UJS0 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 0 0 156.5 3.63E-10 30725000 19243 18090 8490.2 19814 12132 19223 26581 23445 10535 48739 FALSE FALSE TRUE 23523.53896 20205.46814 11631.07829 20896.38865 10924.09548 20229.48656 20901.7522 17695.07699 12649.27787 36589.26427 0.642908225 0.552223953 0.317882267 0.571107101 0.29856013 0.552880386 0.571253689 0.483613905 0.345710091 1 15.15913279 -10.24389283 4.584437232 1.00017201 0.481057079 0.648630682 0.114420296 308894207.5 178.6191622 578230.7879 0.027244598 5.70E-11 10.24389283 -0.519114931 FGMT(ph)PSK ddPTM_HeLa_A485_30min_R1 1 FGMTPSK 7 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 FGMT(0.965)PS(0.035)K 90.696 0.032248 111520000 333440 210930 180340 333650 341810 239480 438840 364960 214440 385790 TRUE FALSE FALSE 407612.5776 235596.4287 247055.2706 351876.4547 307778.1962 252018.8025 345078.249 275452.9878 257476.141 289619.6529 1.407406485 0.813468376 0.853033515 1.214960556 1.062697897 0.87017162 1.191487682 0.951085277 0.889014742 1 18.14379998 -4.24553639 24.654811 0.990037364 1.407406864 0.483774355 0.131373055 2367.102247 3669710.886 0.033449535 0.824992544 5.68E-05 4.24553639 0.4173695 FGMT(ph)PSK ddPTM_HeLa_A486_30min_R1 2 FGMTPSK 7 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 FGMT(0.993)PS(0.007)K;FGMT(0.998)PS(0.002)K ; 108.43 0.015342 395630000 739880 978040 629170 519750 895950 1194320 1451730 1356470 703630 1096120 TRUE FALSE FALSE 688018.2327 900536.5484 872801.4738 1210004.267 783571.5966 1046976.941 1088491.799 1047631.393 764621.2149 821644.4175 0.83736738 1.096017364 1.062261795 1.472661703 0.953662655 1.274245792 1.324772342 1.275042306 0.930598686 1 19.64815465 -4.188169542 1.562288447 1.186912539 0.666166964 0.245101896 0.16842941 1.698416519 3.425973311 0.045689217 1.425791423 6.48E-05 4.188169542 -0.520745575 FGQAATMEGIGAIGGT(ph)PPAFNR ddPTM_HeLa_A485_30min_R1 19 FGQAATMEGIGAIGGTPPAFNR 22 0 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 1 0 FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR ;;;;;;;;;;;;;;;;;; 335.89 4.44E-114 12561020000 2138966.7 2683106 2617348 2220460 3694218 2477142 3116659 3390825 2316435.9 2919633 TRUE FALSE FALSE 2614772.463 2996871.907 3585613.942 2341758.107 3326408.685 2606841.325 2450759.344 2559219.852 2781323.338 2191822.225 1.192967401 1.367296979 1.635905459 1.068406954 1.517645294 1.189348887 1.118137829 1.167622001 1.268954802 1 21.06369936 -6.45692666 10.01170711 1.152779712 1.35648727 0.301877332 0.158793181 0.768213116 113.9143482 0.054260406 0.047779475 3.49E-07 6.45692666 0.203707559 FGQAATMEGIGAIGGT(ph)PPAFNR ddPTM_HeLa_A486_30min_R1 15 FGQAATMEGIGAIGGTPPAFNR 22 0 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 1 0 FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR ;;;;;;;;;;;;;; 365.16 7.01E-149 8220370000 5204597.4 5223043.4 4019705.9 2030121.3 5883436 4934650 5431773 5614481 4236768.8 5591873.4 TRUE FALSE FALSE 4839781.999 4809150.419 5576243.676 4726224.983 5145480.596 4325863.055 4072685.944 4336186.24 4604015.331 4191631.904 1.154629536 1.147321742 1.330327616 1.127538174 1.227560223 1.032023602 0.971622995 1.03448641 1.098382548 1 21.9990806 -6.26904129 23.84126839 1.025978482 1.198184413 0.663077424 0.060646825 191.7607525 601401.0983 0.021158628 0.019040865 5.38E-07 6.26904129 0.172205931 FGSTGS(ph)TPPVSPTPSER ddPTM_HeLa_A486_30min_R1 1 FGSTGSTPPVSPTPSER 17 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 1 0 FGS(0.008)T(0.06)GS(0.504)T(0.429)PPVSPTPSER 65.092 0.014175 90220000 189060 195860 159950 56085 221960 174140 215150 208450 155850 189860 TRUE FALSE FALSE 175807.8703 180339.3403 221886.9236 130568.7144 194119.7071 152656.3773 161317.1944 160990.4854 169359.2035 142317.8202 1.23531874 1.267159236 1.55909445 0.917444591 1.363987355 1.07264415 1.133499615 1.131203985 1.190007008 1 17.11875679 -5.261606045 24.99999997 1.130320639 1.345187639 0.385002832 0.137009315 16.60004866 2490163.425 0.036287004 0.057861112 5.48E-06 5.261606045 0.214867 FGSTGST(ph)PPVS(ph)PTPSER ddPTM_HeLa_A485_30min_R1 1 FGSTGSTPPVSPTPSER 17 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 2 0 FGSTGS(0.017)T(0.983)PPVS(0.998)PT(0.002)PSER 223.68 7.86E-34 407230000 472010 569610 534180 488770 730600 523320 689400 694950 536030 621140 TRUE FALSE FALSE 577006.9961 636220.9346 731795.4111 515470.2675 657858.8987 550720.226 542104.0581 524512.4229 643606.3042 466301.2292 1.237412556 1.364399008 1.56936196 1.105444797 1.410802412 1.181039619 1.162561932 1.124836029 1.380237203 1 18.83090271 -6.130784194 1.135755076 1.170083126 1.359726531 0.234610133 0.143592522 0.735219276 1.984416762 0.069462088 0.070792467 7.40E-07 6.130784194 0.189643405 FGSTGST(ph)PPVS(ph)PTPSER ddPTM_HeLa_A486_30min_R1 2 FGSTGSTPPVSPTPSER 17 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 2 0 FGSTGS(0.018)T(0.982)PPVS(1)PTPSER;FGSTGS(0.136)T(0.864)PPVS(0.998)PT(0.002)PSER ; 228.99 3.79E-34 1060570000 1120020 1130200 974720 344070 1200310 1052170 1227160 1185110 959400 1074730 TRUE FALSE FALSE 1041512.382 1040638.836 1352157.688 801012.3483 1049755.927 922363.9631 920111.5884 915286.3238 1042561.564 805610.6127 1.292823562 1.291739234 1.678425863 0.9942922 1.303056229 1.144925288 1.142129428 1.136139854 1.294125907 1 19.61972316 -5.277373571 24.97161947 1.157094071 1.408070559 0.452211649 0.138558178 738.7995653 1157824.174 0.037741745 0.056173255 5.28E-06 5.277373571 0.250976488 FGSTGST(ph)PPVSPTPSER ddPTM_HeLa_A485_30min_R1 1 FGSTGSTPPVSPTPSER 17 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 1 0 FGST(0.001)GS(0.306)T(0.693)PPVSPTPSER 137.21 2.23E-07 0 215580 246050 253650 194630 326500 263150 293950 328130 222740 308190 TRUE FALSE FALSE 263535.0273 274823.4071 347485.6903 205262.1441 293992.5136 276928.1271 231145.1811 247655.603 267441.8749 231363.9048 1.139049877 1.18784046 1.501901044 0.88718309 1.270693083 1.196937471 0.999054634 1.070415903 1.155936036 1 17.81980428 -6.346367826 0.643357954 1.049950152 1.232054384 0.149138823 0.149322414 1.56284957 1.398966304 0.119753141 0.118095831 4.50E-07 6.346367826 0.182104232 FGSTGST(ph)PPVSPTPSER ddPTM_HeLa_A486_30min_R1 1 FGSTGSTPPVSPTPSER 17 0 A0A494BZX7;W0Z7M9;B0QY83;A0A499FIJ6;E7ER32;A0A087X287;A0A087WU73;Q969V6 A0A494BZX7 mkl1;MKL1 MKL/myocardin-like protein 1 1 0 FGSTGS(0.077)T(0.923)PPVSPTPSER 257.16 8.99E-51 178290000 279660 281590 204650 83180 305680 244760 275610 271280 201060 258320 TRUE FALSE FALSE 260057.2782 259275.7829 283895.9607 193647.2437 267338.764 214563.9997 206649.4629 209515.466 218488.0427 193634.9906 1.34302833 1.338992411 1.466139771 1.000063279 1.380632515 1.108084851 1.067211366 1.082012426 1.128350005 1 17.56298015 -5.695327664 0.480777004 1.035849731 1.430933768 0.506401207 0.114932218 1.204573758 0.518157772 0.095187809 0.233027649 2.02E-06 5.695327664 0.395084037 FGT(ph)FGGLGSK ddPTM_HeLa_A485_30min_R1 2 FGTFGGLGSK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FGT(1)FGGLGSK;FGT(1)FGGLGSK ; 140.14 7.34E-05 530710000 1405870 552630 406610 1560790 1312810 585990 1813090 1378620 594030 1596610 TRUE FALSE FALSE 1718600.931 617255.2713 557031.9595 1646052.006 1182102.027 616671.5303 1425708.51 1040511.283 713246.3722 1198604.51 1.433834861 0.514978265 0.464733742 1.373307034 0.986231919 0.514491248 1.189473673 0.868102259 0.595063982 1 20.19292428 -9.216349507 10.12497529 1.00003478 0.874469679 0.010027835 0.343257426 0 0 0.326398485 0.079163261 6.08E-10 9.216349507 -0.125565101 FGT(ph)FGGLGSK ddPTM_HeLa_A486_30min_R1 2 FGTFGGLGSK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FGT(1)FGGLGSK;FGT(1)FGGLGSK ; 115.92 0.0022522 723580000 584400 1114210 660800 1661910 976650 1692240 2650000 2226900 574050 1356250 TRUE FALSE FALSE 543436.5778 1025915.942 916679.4568 3869010.468 854149.4501 1483468.634 1986941.971 1719883.483 623809.1162 1016636.172 0.534543815 1.009127916 0.90167897 3.805698217 0.840172201 1.459193244 1.954427774 1.691739415 0.613601142 1 19.95537204 -5.038737393 24.99997222 1.682592417 0.817723457 0.160905038 0.840632887 892.9003965 576250.7664 0.225362324 0.390440565 9.15E-06 5.038737393 -0.864868959 FGTFGGLGS(ph)K ddPTM_HeLa_A486_30min_R1 2 FGTFGGLGSK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FGTFGGLGS(1)K;FGTFGGLGS(1)K ; 207.12 5.22E-14 1942000000 3222634 2408970 735997 1741853 1721825 3586090 5109010 5891830 1802638 4088910 TRUE FALSE FALSE 2996743.998 2218074.444 1020994.749 4055121.812 1505857.653 3143674.676 3830681.66 4550388.927 1958892.113 3065020.322 0.977724023 0.72367365 0.333111902 1.323032602 0.491304297 1.025661936 1.249806285 1.484619497 0.639112276 1 21.54746521 -6.50648727 22.4396207 1.134335959 0.772166088 0.188877343 0.319223436 283.4231831 388003.7158 0.11106094 0.095110279 3.12E-07 6.50648727 -0.362169871 FGTICYVMMMPFKR ddPTM_HeLa_A485_30min_R1 1 FGTICYVMMMPFKR 14 1 B7WPG3;C9IYN3;V9GYK2;Q8WVV9-3;Q8WVV9-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9;C9JJZ7;H7BXH8 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 0 180.09 1.82E-10 10430000 10776 15849 11221 10127 19966 13930 23213 25775 8020.6 15634 FALSE FALSE TRUE 13173.08402 17702.40268 15372.11484 10680.21237 17978.11494 14659.35326 18253.35292 19453.64084 9630.260851 11736.73152 1.122380963 1.508290673 1.309744098 0.909981825 1.531782072 1.249014961 1.555233063 1.65750071 0.820523229 1 13.51874308 -7.779815426 24.99246735 0.910261232 1.353194421 0.403951923 0.21631694 282.0003291 383525.6848 0.208559621 0.054258202 1.66E-08 7.779815426 0.442933189 FGTICYVMMMPFKR ddPTM_HeLa_A486_30min_R1 2 FGTICYVMMMPFKR 14 1 B7WPG3;C9IYN3;V9GYK2;Q8WVV9-3;Q8WVV9-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9;C9JJZ7;H7BXH8 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 0 0 ; ; 141.32 8.62E-06 18037400 15885.2 14949.1 11676.7 6259.9 16521.6 13933.9 18973.6 19043.6 11055.8 20723.5 FALSE FALSE TRUE 14771.72951 13764.47887 16198.23095 14573.36356 14449.30687 12214.87709 14226.2046 14707.788 12014.12565 15534.20071 0.950916612 0.886075771 1.042746341 0.938146985 0.930160949 0.78632157 0.915798943 0.946800435 0.773398379 1 13.92316039 -6.014078782 23.82148643 0.88033555 0.953174228 0.171686593 0.072818461 606.7733484 1026670.331 0.022823506 0.023750281 9.68E-07 6.014078782 0.072838678 FGVPVIADGGIQNVGHIAK ddPTM_HeLa_A485_30min_R1 1 FGVPVIADGGIQNVGHIAK 19 0 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 0 173.51 1.52E-14 0 10983 10675 10224 12621 14422 11812 16098 13632 11051 16524 FALSE FALSE TRUE 13426.13046 11923.34839 14006.28306 13310.45327 12986.09504 12430.45806 12658.53079 10288.73063 13268.83433 12404.8709 1.082327302 0.961182787 1.129095431 1.07300216 1.046854509 1.00206267 1.02044841 0.829410536 1.069647112 1 13.5986191 -6.571661498 1.830315134 0.962643727 1.058069267 0.221969777 0.069603329 0.476057143 3.233003688 0.031977332 0.023292304 2.68E-07 6.571661498 0.09542554 FGVVVVGVGR ddPTM_HeLa_A485_30min_R1 1 FGVVVVGVGR 10 0 P53004;C9J1E1 P53004 BLVRA Biliverdin reductase A 0 0 160.03 2.19E-05 14472000 11685 13339 14627 12547 19544 11272 14103 17803 10385 19253 FALSE FALSE TRUE 14284.28794 14898.88002 20038.13598 13232.41084 17598.13074 11862.18449 11089.77884 13436.78634 12469.17424 14453.58143 0.988287091 1.030808876 1.3863786 0.915510865 1.217561947 0.820709009 0.767268576 0.929650994 0.862704812 1 13.8191394 -6.271092247 24.69294388 0.864869973 1.108241139 0.424814441 0.134454012 545.8331442 1396288.391 0.046042834 0.041124886 5.36E-07 6.271092247 0.243371166 FHALSSPQS(ph)PFPSTPTSR ddPTM_HeLa_A485_30min_R1 4 FHALSSPQSPFPSTPTSR 18 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FHALSS(0.001)PQS(0.999)PFPSTPTSR;FHALSSPQS(1)PFPSTPTSR;FHALSS(0.001)PQS(0.999)PFPSTPTSR;FHALSS(0.001)PQS(0.999)PFPSTPTSR ;;; 130.83 5.87E-09 879670000 286358 424260 428590 275913 474039 388968 484973 499084 356073 425277 TRUE FALSE FALSE 350057.3492 473873.5164 587143.2761 290985.4285 426842.0127 409333.763 381354.5567 376682.8665 427533.585 319263.2705 1.096453559 1.484271948 1.839056761 0.911427826 1.336959344 1.282119808 1.194483023 1.179850303 1.339125494 1 18.28438706 -9.60793846 0.128049801 0.673877536 1.523306648 0.139699594 0.231776595 56.85752055 1.771671111 9.465343368 2.830802845 2.47E-10 9.60793846 0.849429112 FHALSSPQS(ph)PFPSTPTSR ddPTM_HeLa_A486_30min_R1 1 FHALSSPQSPFPSTPTSR 18 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FHALSSPQS(1)PFPSTPTSR 157.7 2.02E-11 0 216220 231040 197000 45009 272090 183650 220100 226240 195410 196880 TRUE FALSE FALSE 201064.0946 212731.549 273283.6758 104783.2266 237961.9351 160993.1302 165028.652 174730.0908 212348.2961 147579.9665 1.36240778 1.441466304 1.851766756 0.710009828 1.612427084 1.090887429 1.118232074 1.183968901 1.438869388 1 17.17113737 -5.243892775 24.99441706 1.186195775 1.540838821 0.320553802 0.256716894 1043.759313 1486790.404 0.066478221 0.114807003 5.70E-06 5.243892775 0.354643046 FHDFLGDSWGILFSHPR ddPTM_HeLa_A485_30min_R1 7 FHDFLGDSWGILFSHPR 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ;;;;;; ;;;;;; 257.35 2.67E-43 7255681200 1128493.9 1548355.73 1603869.72 771708.55 1609617.14 1590065.19 2066637.5 2106304.8 1155395.23 1603013.7 FALSE FALSE TRUE 1379523.475 1729422.464 2197207.872 813865.034 1449358.006 1673318.545 1625083.515 1589730.245 1387272.455 1203411.886 1.146343568 1.437099371 1.825815332 0.676297985 1.204374016 1.390478658 1.350396763 1.321019232 1.152782743 1 20.19869908 -13.48326039 0.192973712 2.26E-11 1.338624895 0.091857625 0.272110558 297.9599528 3.504308379 115.2796997 0.74833116 3.29E-14 13.48326039 1.338624895 FHDFLGDSWGILFSHPR ddPTM_HeLa_A486_30min_R1 7 FHDFLGDSWGILFSHPR 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ;;;;;; ;;;;;; 202.34 7.99E-19 8296181810 1270917.29 1493831.9 1323455.56 285085.73 1910842.9 1311776.28 1597316 1638533.02 1573239.96 1439321.48 FALSE FALSE TRUE 1181832.551 1375455.22 1835932.996 663693.9869 1671167.166 1149942.66 1197650.642 1265474.82 1709609.666 1078906.013 1.095398984 1.27486102 1.701661659 0.615154591 1.548946011 1.065841367 1.110060216 1.172924059 1.584577012 1 20.04113776 FHDT(ph)SSPLLISGTSAAELPWAVKPEDK ddPTM_HeLa_A485_30min_R1 2 FHDTSSPLLISGTSAAELPWAVKPEDK 27 1 B1AUU8;P42566 B1AUU8 EPS15 Epidermal growth factor receptor substrate 15 1 0 FHDT(0.375)S(0.312)S(0.312)PLLISGTSAAELPWAVKPEDK;FHDT(0.4)S(0.329)S(0.271)PLLISGTSAAELPWAVKPEDK ; 189.08 2.28E-20 971550000 635760 481630 309065 801610 617500 644270 1115140 873470 538150 1574050 TRUE FALSE FALSE 777182.6187 537952.4389 423401.0048 845399.9245 556019.5318 678002.981 876881.2291 659250.113 646151.7688 1181668.303 0.657699472 0.45524826 0.358307829 0.715429129 0.470537739 0.573767595 0.742070534 0.557897771 0.546813151 1 20.17239369 -14 0.229241441 3.34497938 0.512464868 0.579173733 0.11191924 114.9425122 1.150862052 124.9432653 0.197399145 1.00E-14 14 -2.832514512 FHDT(ph)SSPLMVTPPSAEAHWAVR ddPTM_HeLa_A486_30min_R1 1 FHDTSSPLMVTPPSAEAHWAVR 22 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 FHDT(0.374)S(0.331)S(0.294)PLMVTPPSAEAHWAVR 69.922 0.009025 331920000 100310 101530 95874 8237.2 125740 94327 112220 106780 103030 71195 TRUE FALSE FALSE 93278.787 93484.39303 132998.9804 19176.61789 109968.5167 82689.89379 84141.36906 82468.52499 111960.7234 53367.3086 1.747863804 1.751716463 2.492143297 0.359332677 2.060597014 1.549448454 1.576646289 1.545300431 2.097927107 1 15.70366864 -10.76373394 2.894494526 0.860673923 1.672885625 0.131989892 0.527275793 144962155.4 112084534.5 143086655.1 0.124932226 1.72E-11 10.76373394 0.812211702 FHDTS(ph)SPLMVTPPSAEAHWAVR ddPTM_HeLa_A485_30min_R1 3 FHDTSSPLMVTPPSAEAHWAVR 22 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 FHDT(0.002)S(0.651)S(0.347)PLMVTPPSAEAHWAVR;FHDT(0.116)S(0.442)S(0.442)PLMVTPPSAEAHWAVR;FHDT(0.055)S(0.516)S(0.429)PLMVTPPSAEAHWAVR ;; 213.05 9.44E-28 4012000000 414260 538470 570130 294171 638360 496000 565320 662320 475240 533930 TRUE FALSE FALSE 506410.7078 601439.3824 781044.8121 310240.8168 574802.637 521969.793 444534.7638 499884.9815 570616.3088 400831.0773 1.263401808 1.500480917 1.948563513 0.77399392 1.434027124 1.302218871 1.10903268 1.247121318 1.423583003 1 18.61263484 -5.256740911 24.99975669 1.206763785 1.563781923 0.344004456 0.243163374 487.1816484 2592201.299 0.065566125 0.108921236 5.54E-06 5.256740911 0.357018138 FHDTS(ph)SPLMVTPPSAEAHWAVR ddPTM_HeLa_A486_30min_R1 1 FHDTSSPLMVTPPSAEAHWAVR 22 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 FHDT(0.157)S(0.685)S(0.157)PLMVTPPSAEAHWAVR 125.91 1.41E-06 290240000 54728 54059 50353 11259 72588 55891 55586 58343 60813 53484 TRUE FALSE FALSE 50891.84982 49775.16796 69851.0301 26211.521 63483.33618 48995.73668 41677.79487 45059.57252 66084.3198 40091.25828 1.269400164 1.241546664 1.742300768 0.653796417 1.583470784 1.222105236 1.03957313 1.123925126 1.648347362 1 15.29100008 -5.174498314 24.14589 1.199066798 1.400123103 0.115004165 0.296228129 145.9419732 40527.3574 0.077469431 0.134181026 6.69E-06 5.174498314 0.201056305 FHDTSS(ph)PLMVTPPSAEAHWAVR ddPTM_HeLa_A485_30min_R1 4 FHDTSSPLMVTPPSAEAHWAVR 22 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 FHDTS(0.021)S(0.979)PLMVTPPSAEAHWAVR;FHDT(0.001)S(0.031)S(0.968)PLMVTPPSAEAHWAVR;FHDT(0.003)S(0.032)S(0.964)PLMVTPPSAEAHWAVR;FHDT(0.009)S(0.088)S(0.904)PLMVTPPSAEAHWAVR ;;; 205.38 4.29E-27 1914000000 195478 278203 272032 147281 288409 221472 282354 310731 222918 242888 TRUE FALSE FALSE 238961.4067 310736.4208 372667.957 155326.5881 259693.9873 233067.9315 222026.7613 234523.735 267655.5979 182340.4916 1.310522992 1.704154782 2.043802524 0.851849124 1.424225552 1.278201728 1.217649241 1.286185712 1.467888978 1 17.47627544 -5.25884453 24.99999394 1.241010973 1.687959545 0.445657727 0.238304255 219.9583711 2119169.915 0.064561283 0.105590025 5.51E-06 5.25884453 0.446948572 FHDTSS(ph)PLMVTPPSAEAHWAVR ddPTM_HeLa_A486_30min_R1 7 FHDTSSPLMVTPPSAEAHWAVR 22 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 FHDT(0.003)S(0.035)S(0.962)PLMVTPPSAEAHWAVR;FHDT(0.007)S(0.042)S(0.951)PLMVTPPSAEAHWAVR;FHDT(0.001)S(0.023)S(0.977)PLMVTPPSAEAHWAVR;FHDTS(0.004)S(0.996)PLMVTPPSAEAHWAVR;FHDTS(0.03)S(0.97)PLMVTPPSAEAHWAVR;FHDTS(0.006)S(0.994)PLMVTPPSAEAHWAVR;FHDTS(0.051)S(0.949)PLMVTPPSAEAHWAVR ;;;;;; 252.71 3.30E-59 8146570000 1012705 1016201 950140 88252.9 1356512 858911 1029026 1072973 972197 671022 TRUE FALSE FALSE 941719.6091 935673.5318 1318059.654 205457.2113 1186365.616 752947.2936 771552.8109 828680.4707 1056467.819 502993.7236 1.872229344 1.86020916 2.620429623 0.408468738 2.358609184 1.496931787 1.533921349 1.647496642 2.100359844 1 18.94018087 -11.05620021 2.182911949 0.000418894 1.753589235 0.141547519 0.565498595 16590532.63 4838675.146 82729115.7 0.146564417 8.79E-12 11.05620021 1.753170341 FHFPPLDT(ph)HSPTNDVQPGR ddPTM_HeLa_A485_30min_R1 1 FHFPPLDTHSPTNDVQPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 FHFPPLDT(0.586)HS(0.4)PT(0.014)NDVQPGR 112.32 9.07E-05 167450000 70875 97463 90761 68714 100300 85249 110590 108010 66461 101100 TRUE FALSE FALSE 86640.89923 108860.45 124337.2708 72467.67183 90313.77983 89712.50582 86961.54306 81520.37815 79799.11308 75897.63061 1.14154946 1.434306304 1.638223351 0.954808091 1.189942019 1.182019848 1.145774148 1.074083308 1.051404536 1 16.21176723 -5.271392651 24.9993384 1.099413133 1.407654373 0.547726333 0.132511502 520.8372188 1308170.526 0.037695584 0.056662389 5.35E-06 5.271392651 0.308241239 FHFPPLDT(ph)HSPTNDVQPGR ddPTM_HeLa_A486_30min_R1 2 FHFPPLDTHSPTNDVQPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 FHFPPLDT(0.495)HS(0.495)PT(0.01)NDVQPGR;FHFPPLDT(0.497)HS(0.497)PT(0.005)NDVQPGR ; 140.02 9.80E-07 269470000 194256 188585 150678 51400 220278 168073 179492 202320 163413 206655 TRUE FALSE FALSE 180639.6575 173640.8378 209024.5569 119661.7976 192648.6792 147337.8621 134581.2031 156256.1526 177577.7704 154907.2429 1.166114987 1.120934274 1.349353026 0.772473871 1.243638939 0.951136043 0.868785737 1.008707854 1.146349048 1 17.24104508 -5.246174305 24.99980659 1.001897615 1.203014094 0.343965079 0.134833084 977.7435525 1601260.505 0.035717887 0.061568287 5.67E-06 5.246174305 0.20111648 FHFPPLDTHS(ph)PTNDVQPGR ddPTM_HeLa_A485_30min_R1 5 FHFPPLDTHSPTNDVQPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 FHFPPLDT(0.155)HS(0.842)PT(0.003)NDVQPGR;FHFPPLDT(0.038)HS(0.957)PT(0.005)NDVQPGR;FHFPPLDT(0.205)HS(0.764)PT(0.031)NDVQPGR;FHFPPLDTHS(0.866)PT(0.134)NDVQPGR;FHFPPLDT(0.184)HS(0.783)PT(0.033)NDVQPGR ;;;; 217.11 9.35E-35 473526000 408070 592004 529871 396615 575560 518513 631330 647290 409606 530425 TRUE FALSE FALSE 498843.7637 661233.718 725892.3327 418281.0732 518255.2255 545661.5389 496441.188 488541.1126 491810.1671 398199.8092 1.25274737 1.660557596 1.822934908 1.050430119 1.301495414 1.370320945 1.246713777 1.226874301 1.235083884 1 18.603133 -6.369523967 0.241455798 0.97559065 1.675455045 0.336751179 0.194867366 4.169489258 0.586849223 0.43871472 0.971594065 4.27E-07 6.369523967 0.699864394 FHFPPLDTHS(ph)PTNDVQPGR ddPTM_HeLa_A486_30min_R1 1 FHFPPLDTHSPTNDVQPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 FHFPPLDT(0.22)HS(0.777)PT(0.003)NDVQPGR 117.31 1.90E-05 156210000 99908 91449 72882 29171 109690 73919 96636 91755 84368 106370 TRUE FALSE FALSE 92904.96513 84202.24819 101103.8622 67911.56222 95931.65738 64799.62533 72456.65069 70864.3895 91681.08617 79734.25965 1.165182514 1.056035995 1.268010297 0.851723745 1.20314226 0.812694889 0.908726701 0.888757102 1.14983304 1 16.28291212 -5.261113405 24.99986976 0.969081425 1.152372237 0.319599329 0.126314213 35.63312947 2732732.764 0.0339984 0.054516661 5.48E-06 5.261113405 0.183290812 FHILFK ddPTM_HeLa_A485_30min_R1 2 FHILFK 6 0 P32004-3;P32004-2;P32004 P32004-3 L1CAM Neural cell adhesion molecule L1 0 0 ; ; 101.61 0.0096099 50336000 122900 135168 67811 134008 87993 125732 164712 164818 100343 294450 FALSE FALSE TRUE 150238.681 150974.7218 92897.11075 141328.5177 79232.10796 132315.1331 129519.9356 124396.1271 120480.9197 221049.034 0.679662237 0.682992 0.420255674 0.6393537 0.358436798 0.598578201 0.585933054 0.562753543 0.545041603 1 17.7540069 -10.18035366 3.302165245 1.000856006 0.560803628 0.635481731 0.099118209 30828499.01 46245720.96 277629.1057 0.024503114 6.60E-11 10.18035366 -0.440052378 FHILFK ddPTM_HeLa_A486_30min_R1 1 FHILFK 6 0 P32004-3;P32004-2;P32004 P32004-3 L1CAM Neural cell adhesion molecule L1 0 0 87.042 0.01898 20850000 29603 22894 17587 6454.8 30343 30743 25176 25072 29914 47545 FALSE FALSE TRUE 27527.98257 21079.79606 24397.1574 15027.10061 26537.098 26950.24123 18876.69852 19363.65292 32506.96961 35639.42253 0.772402598 0.591474119 0.684555351 0.421642651 0.744599551 0.75619186 0.529657811 0.543321175 0.91210708 1 15.12118634 -7.874737639 4.978670484 0.993484104 0.629245008 0.597201221 0.107752487 0.135213846 4.913471009 0.103610667 0.027126546 1.33E-08 7.874737639 -0.364239096 FHINWEDNTEKLEDAES(ph)SNPNLQSLLSTDALPSASK ddPTM_HeLa_A485_30min_R1 1 FHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASK 36 1 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 FHINWEDNT(0.001)EKLEDAES(0.464)S(0.464)NPNLQS(0.068)LLS(0.001)T(0.001)DALPSASK 86.867 4.40E-05 359250000 72051 60823 49232 140690 107470 97953 175210 164200 74739 191390 TRUE FALSE FALSE 88078.49638 67935.72076 67444.96551 148375.5385 96769.90945 103081.6676 137774.9522 123929.6925 89738.43175 143679.9953 0.613018508 0.47282658 0.469410967 1.032680563 0.673509971 0.717439247 0.958901425 0.862539648 0.624571511 1 17.13249968 -5.241363463 24.95205436 0.82588823 0.513859434 0.541612002 0.134578777 622.920805 774217.8776 0.035846909 0.061987229 5.74E-06 5.241363463 -0.312028795 FHINWEDNTEKLEDAES(ph)SNPNLQSLLSTDALPSASK ddPTM_HeLa_A486_30min_R1 1 FHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASK 36 1 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 FHINWEDNTEKLEDAES(0.5)S(0.5)NPNLQSLLSTDALPSASK 171.28 7.77E-15 253290000 133870 119050 60190 106310 147170 199050 257910 244320 119510 273990 TRUE FALSE FALSE 124486.4043 109616.0444 83497.17994 247495.0526 128710.5663 174493.2348 193378.1901 188693.6695 129869.223 205381.1206 0.606123893 0.533720159 0.406547494 1.205052596 0.626691323 0.849606986 0.941557771 0.918748855 0.632332819 1 17.64794404 -5.235088229 24.9970314 0.869107379 0.517289451 0.506871799 0.165329619 622.5719322 590578.7999 0.043020377 0.07448488 5.82E-06 5.235088229 -0.351817928 FHINWEDNTEKLEDAESS(ph)NPNLQSLLSTDALPSASK ddPTM_HeLa_A485_30min_R1 1 FHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASK 36 1 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 FHINWEDNTEKLEDAES(0.16)S(0.84)NPNLQSLLSTDALPSASK 146.7 1.04E-09 253940000 157530 112720 87505 268760 213600 173640 355350 344700 138210 382400 TRUE FALSE FALSE 192572.005 125901.6235 119876.7409 283441.6783 192333.234 182731.5219 279426.5696 260161.7845 165947.4793 287074.7176 0.670807958 0.438567438 0.41758028 0.987344621 0.66997622 0.636529484 0.973358337 0.906251121 0.57806372 1 18.13106675 -5.250609475 24.97522722 0.810028572 0.501943433 0.452928581 0.157047361 664.3791228 1532145.383 0.042511503 0.072719652 5.62E-06 5.250609475 -0.308085138 FHINWEDNTEKLEDAESS(ph)NPNLQSLLSTDALPSASK ddPTM_HeLa_A486_30min_R1 1 FHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASK 36 1 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 FHINWEDNT(0.002)EKLEDAES(0.17)S(0.817)NPNLQS(0.008)LLS(0.002)T(0.001)DALPSASK 73.266 0.00044761 501800000 108460 91497 43548 55842 107910 125720 194640 166610 74946 168460 TRUE FALSE FALSE 100857.5141 84246.44449 60410.95186 130002.9981 94374.92158 110209.9446 145939.0133 128676.5401 81442.37962 126276.5195 0.798703627 0.66715843 0.478402098 1.029510463 0.747367143 0.872766727 1.155709817 1.019006072 0.64495268 1 16.94622688 -5.270102007 24.99584142 0.925116187 0.649995085 0.396952397 0.15594046 643.6701454 1857297.057 0.04492037 0.067812971 5.37E-06 5.270102007 -0.275121102 FHLGLFTDR ddPTM_HeLa_A486_30min_R1 1 FHLGLFTDR 9 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 0 0 129.1 0.00056673 20969000 9394.6 8999.2 6801.5 3628.2 9950.1 8577.8 9602.8 8634 6572.9 10873 FALSE FALSE TRUE 8736.087054 8286.070617 9435.22295 8446.632959 8702.065677 7519.558249 7200.077872 6668.226679 7142.644264 8150.330029 1.071869117 1.016654613 1.157649189 1.036354716 1.067694884 0.922607824 0.883409365 0.818154192 0.876362582 1 12.99264276 -6.337304579 2.776922494 0.88008513 1.07256525 0.704801216 0.054848549 0.142282849 2.151227658 0.020403162 0.018009335 4.60E-07 6.337304579 0.19248012 FHNELNAHIK ddPTM_HeLa_A486_30min_R1 2 FHNELNAHIK 10 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 0 0 ; ; 123.79 0.00098697 5924300 10838.9 9657.2 7083.6 4668.6 10617.9 10094.4 12275 10132.9 8640.1 12539.8 FALSE FALSE TRUE 10079.14908 8891.928301 9826.559625 10868.73674 9286.103974 8849.05556 9203.665168 7825.85987 9389.030825 9399.75246 1.07227814 0.945974731 1.045406213 1.156279039 0.987909417 0.941413681 0.979139101 0.832560209 0.998859371 1 13.19840705 -5.993953077 24.99868876 0.944274406 1.049711494 0.362055443 0.065141691 176.4936424 729637.9709 0.020550989 0.023243032 1.01E-06 5.993953077 0.105437087 FHPEPYGLEDDQRS(ph)MGYDDLDYGMMSDYGTAR ddPTM_HeLa_A486_30min_R1 1 FHPEPYGLEDDQRSMGYDDLDYGMMSDYGTAR 32 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 FHPEPYGLEDDQRS(0.872)MGY(0.128)DDLDYGMMSDYGTAR 179.49 5.38E-21 251530000 22523 41017 67991 35318 168620 56122 88019 113640 43422 45783 TRUE FALSE FALSE 20944.25401 37766.66354 94318.93606 82222.08887 147470.1073 49198.23825 65995.71523 87766.65274 47185.85392 34318.6388 0.610288017 1.100470906 2.748329752 2.395843534 4.297084978 1.433571959 1.923028346 2.557404833 1.374933726 1 15.06670471 -4.634333002 4.949691329 2.311088149 0.726355745 0.277270039 0.880645808 0.233692757 8.89915786 0.225825781 0.637527829 2.32E-05 4.634333002 -1.584732405 FHQLDIDDLQSIR ddPTM_HeLa_A485_30min_R1 1 FHQLDIDDLQSIR 13 0 E9PQ63;A8MTM1;P16152-2;P16152;O75828 E9PQ63;O75828 CBR1;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 0 0 225.86 4.97E-27 94070000 57853 84068 76629 66352 93000 90926 104670 114880 63552 84416 FALSE FALSE TRUE 70722.20026 93899.02131 104977.2559 69976.64175 83740.59346 95686.74476 82306.39942 86705.49988 76306.30347 63372.64476 1.115973628 1.481696427 1.656507414 1.104208953 1.321399695 1.509906129 1.298768573 1.368184967 1.204088984 1 15.95157261 -8.043960591 2.150830726 0.999983362 1.366692123 0.325091172 0.16021072 0.416969737 4.409533946 0.153654825 0.042534957 9.04E-09 8.043960591 0.366708762 FHQLDIDDLQSIR ddPTM_HeLa_A486_30min_R1 1 FHQLDIDDLQSIR 13 0 E9PQ63;A8MTM1;P16152-2;P16152;O75828 E9PQ63;O75828 CBR1;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 0 0 174.95 6.62E-12 118690000 94990 108770 93101 40298 137880 115440 116700 125550 101580 122100 FALSE FALSE TRUE 88331.69153 100150.6691 129152.2005 93815.78055 120585.8047 101198.1865 87500.42567 96965.00574 110385.0362 91525.36526 0.965106135 1.094239491 1.411108278 1.025024924 1.317512412 1.105684596 0.95602378 1.059433147 1.206059499 1 16.48188401 -6.51843006 24.86220894 1.056120766 1.169627172 0.121037759 0.135744863 385.5191097 2154563.546 0.050843035 0.040428467 3.03E-07 6.51843006 0.113506405 FHS(ph)LPFSLTK ddPTM_HeLa_A486_30min_R1 1 FHSLPFSLTK 10 0 J3KRR7;Q9NQC7-2;Q9NQC7 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 1 0 FHS(1)LPFSLTK 147.24 3.46E-06 170840000 251980 212790 115090 79318 188050 222810 250700 240770 185060 295750 TRUE FALSE FALSE 234317.5032 195927.7454 159655.9302 184656.3125 164463.0155 195321.9676 187972.2084 185951.927 201101.1498 221692.275 1.056949338 0.883782466 0.720169118 0.83293977 0.741852712 0.881049949 0.847896971 0.838783972 0.907118436 1 17.75819897 -8.056722771 2.596280103 0.999847838 0.84373989 0.219192241 0.086232938 0.49758118 7.834047337 0.085071743 0.02303207 8.78E-09 8.056722771 -0.156107948 FHS(ph)PSTTWS(ph)PNKDTPQEK ddPTM_HeLa_A485_30min_R1 2 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 FHS(0.759)PS(0.262)T(0.131)T(0.126)WS(0.718)PNKDT(0.005)PQEK;FHS(0.969)PS(0.282)T(0.188)T(0.202)WS(0.36)PNKDTPQEK ; 158.69 1.09E-08 1122620000 616250 444159 248032 1071400 636970 501540 978340 827400 406942 1406050 TRUE FALSE FALSE 753332.6865 496099.5314 339789.3583 1129927.869 573551.0303 527799.8589 769309.6667 624478.8527 488611.5267 1055547.611 0.713688969 0.469992567 0.321908131 1.070466038 0.543368223 0.500024682 0.728825169 0.591615997 0.462898614 1 20.00956022 -10.39041052 3.622806202 1.00246656 0.601016646 0.275985721 0.194208485 102050939.3 160247081 2641341.563 0.048115689 4.07E-11 10.39041052 -0.401449913 FHS(ph)PSTTWS(ph)PNKDTPQEK ddPTM_HeLa_A486_30min_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 FHS(0.995)PS(0.005)TTWS(1)PNKDTPQEK 219.23 6.32E-34 1505800000 535360 407810 167860 244630 316260 516870 764610 668480 354650 832600 TRUE FALSE FALSE 497834.0286 375493.6504 232859.8874 569511.0029 276591.7218 453103.8345 573296.4908 516281.6968 385391.3476 624111.5407 0.797668359 0.6016451 0.373106203 0.912514776 0.443176746 0.725998167 0.918580179 0.827226646 0.61750396 1 19.25144436 -6.522168419 24.70254344 0.825838421 0.622038727 0.258880218 0.170861194 33.06534419 1150000.467 0.062609148 0.049108963 3.00E-07 6.522168419 -0.203799693 FHS(ph)PSTTWSPNK ddPTM_HeLa_A485_30min_R1 4 FHSPSTTWSPNK 12 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.457)PS(0.457)T(0.086)T(0.001)WSPNK;FHS(0.498)PS(0.498)T(0.003)T(0.001)WSPNK;FHS(0.62)PS(0.373)T(0.005)T(0.002)WSPNK;FHS(0.807)PS(0.19)T(0.002)TWSPNK ;;; 126.19 2.92E-05 1697820000 2642040 2040890 1992290 3507120 3120870 2023720 2881260 2063050 2527430 5224120 TRUE FALSE FALSE 3229752.683 2279554.332 2729320.977 3698705.085 2810145.225 2129678.85 2265655.263 1557083.753 3034662.018 3921843.027 0.82352931 0.581245684 0.695928154 0.943103806 0.716536895 0.54303011 0.577701669 0.397028576 0.773784671 1 21.90310036 -8.011824158 24.66540312 1.000000027 0.658208504 0.342856633 0.143946837 588.3777743 1227368.084 0.148776727 0.038413986 9.73E-09 8.011824158 -0.341791522 FHS(ph)PSTTWSPNK ddPTM_HeLa_A486_30min_R1 3 FHSPSTTWSPNK 12 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.852)PS(0.147)T(0.001)TWSPNK;FHS(0.834)PS(0.165)T(0.001)TWSPNK;FHS(0.76)PS(0.185)T(0.037)T(0.018)WSPNK ;; 145.41 1.41E-07 1353860000 2352980 2596590 1471470 480420 2120970 2671260 2765390 2548580 2389070 2326860 TRUE FALSE FALSE 2188048.253 2390826.752 2041262.591 1118442.039 1854938.165 2341707.101 2073460.173 1968323.969 2596156.511 1744199.111 1.254471602 1.370730404 1.17031512 0.641235299 1.063489916 1.342568682 1.188774928 1.12849729 1.488451918 1 20.73413331 -6.239480454 24.26709379 1.235134431 1.093500425 0.083220884 0.214157377 1560.245447 1724248.018 0.075840271 0.075770308 5.76E-07 6.239480454 -0.141634006 FHS(ph)PSTTWSPNKDTPQEK ddPTM_HeLa_A485_30min_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.924)PS(0.065)T(0.009)T(0.002)WSPNKDTPQEK 108.08 7.38E-05 887230000 320210 301170 237990 394170 399200 325790 531860 484670 292540 540710 TRUE FALSE FALSE 391439.6098 336389.2117 326032.4046 415702.509 359454.2463 342847.8606 418223.7661 365803.9226 351250.0947 405920.948 0.964324733 0.828706213 0.803191868 1.024097207 0.885527707 0.844617314 1.030308409 0.901170349 0.865316502 1 18.63083927 -14 0.149290299 1.323607344 0.876083595 0.116197428 0.074787407 300.3829132 2.666271725 29.10755975 0.390228793 1.00E-14 14 -0.44752375 FHS(ph)PSTTWSPNKDTPQEK ddPTM_HeLa_A486_30min_R1 2 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.965)PS(0.033)T(0.001)TWSPNKDTPQEK;FHS(0.868)PS(0.129)T(0.002)TWSPNKDTPQEK ; 192.64 1.63E-18 1446340000 1246240 1000530 484680 291280 995120 1110650 1521110 1375240 888990 1442010 TRUE FALSE FALSE 1158885.012 921244.3589 672361.0762 678114.5605 870302.7705 973629.2953 1140512.189 1062127.873 966048.369 1080921.31 1.072127083 0.852276988 0.622025924 0.627348683 0.805149054 0.900740217 1.055129711 0.982613501 0.893726824 1 20.04383007 -6.392534017 3.205683217 0.981020244 0.77936554 0.331631697 0.123951663 0.319138441 6.179723651 0.051429304 0.044233627 4.05E-07 6.392534017 -0.201654703 FHS(ph)SDS(ph)EEEEHKK ddPTM_HeLa_A486_30min_R1 3 FHSSDSEEEEHKK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 FHS(0.566)S(0.434)DS(1)EEEEHKK;FHS(0.547)S(0.453)DS(1)EEEEHKK;FHS(0.5)S(0.5)DS(1)EEEEHKK ;; 159.31 5.30E-09 1889140000 2186570 1981010 796950 1620620 1641480 2794360 3514660 3206700 1629950 4440310 TRUE FALSE FALSE 2033302.734 1824027.553 1105550.383 3772885.262 1435590.272 2449620.274 2635254.894 2476604.412 1771235.378 3328427.474 0.610889902 0.548014811 0.332153965 1.133533866 0.431311868 0.735969251 0.79174172 0.744076424 0.532153815 1 21.6664093 -14 0.10511523 2.005158772 0.456822456 0.198533831 0.210783831 295.0706099 2.082494535 65.75323735 2.999184672 1.00E-14 14 -1.548336317 FHSPS(ph)TTWS(ph)PNKDTPQEK ddPTM_HeLa_A485_30min_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 FHS(0.164)PS(0.427)T(0.187)T(0.252)WS(0.97)PNKDTPQEK 163.91 5.28E-12 891910000 761110 535190 323530 1345800 774540 698780 1260000 1060300 605730 1928500 TRUE FALSE FALSE 930416.2937 597775.815 443217.2102 1419317.646 697424.078 735367.0403 990790.7067 800259.7625 727294.4549 1447760.441 0.642659011 0.412896912 0.306139882 0.980353935 0.48172616 0.507934199 0.684360947 0.552757031 0.502358287 1 20.46539147 -11.25749254 2.242183145 2.651705738 0.562933175 0.365921025 0.172391134 8614391.591 1273679.926 72230860.69 0.042639311 5.53E-12 11.25749254 -2.088772562 FHSPS(ph)TTWS(ph)PNKDTPQEK ddPTM_HeLa_A486_30min_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 FHS(0.29)PS(0.544)T(0.145)T(0.062)WS(0.96)PNKDTPQEK 146.06 5.15E-08 203010000 588260 511580 183050 263370 385770 618410 872270 766440 389030 995230 TRUE FALSE FALSE 547026.0118 471040.5377 253931.8622 613138.67 337383.1294 542116.8617 654018.8201 591938.3433 422751.4336 746017.9301 0.733261212 0.631406456 0.340383055 0.821881948 0.452245336 0.72668074 0.87667976 0.793463963 0.56667731 1 19.50885078 -6.510009593 22.82373703 0.793377729 0.595506539 0.281891037 0.160669793 270.6221193 479958.6838 0.056467382 0.047427543 3.09E-07 6.510009593 -0.19787119 FHSPS(ph)TTWSPNK ddPTM_HeLa_A486_30min_R1 1 FHSPSTTWSPNK 12 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.276)PS(0.713)T(0.004)T(0.007)WSPNK 120.86 8.01E-05 631310000 886300 939190 529540 153610 774680 910880 950760 893810 863040 777390 TRUE FALSE FALSE 824174.9469 864765.1639 734592.0696 357611.843 677512.4108 798504.8867 712869.7919 690308.9747 937849.0021 582726.484 1.414342697 1.48399839 1.260612122 0.613687301 1.162659377 1.370291052 1.223335152 1.184619189 1.609415442 1 19.15245935 -6.232069655 22.94621859 1.285683581 1.17578871 0.027755705 0.261324282 1131.429564 883970.4639 0.092359701 0.092336618 5.86E-07 6.232069655 -0.109894872 FHSPS(ph)TTWSPNKDTPQEK ddPTM_HeLa_A485_30min_R1 2 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.134)PS(0.833)T(0.016)T(0.016)WSPNKDTPQEK;FHS(0.069)PS(0.568)T(0.172)T(0.172)WS(0.02)PNKDTPQEK ; 198.84 1.89E-25 524250000 664370 610830 357870 751770 793600 672110 1075020 1096130 538480 1137200 TRUE FALSE FALSE 812156.8145 682261.255 490261.0052 792837.2915 714586.3975 707300.6403 845333.1949 827302.3988 646547.9968 853716.9686 0.95131858 0.799165625 0.574266441 0.928688688 0.837029629 0.828495469 0.99017968 0.969059336 0.757332958 1 19.70339833 -6.134426929 1.310767598 0.920274003 0.792570053 0.15581039 0.115774665 0.807557672 2.839706736 0.053857513 0.054150279 7.34E-07 6.134426929 -0.12770395 FHSPS(ph)TTWSPNKDTPQEK ddPTM_HeLa_A486_30min_R1 2 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.071)PS(0.767)T(0.127)T(0.029)WS(0.007)PNKDTPQEK;FHS(0.019)PS(0.655)T(0.159)T(0.159)WS(0.008)PNKDTPQEK ; 179.19 5.48E-18 561680000 857840 727360 341180 179728 682290 766320 1030330 948310 577400 977030 TRUE FALSE FALSE 797709.8459 669721.3446 473294.0331 418415.867 596710.8261 671779.2298 772530.5363 732400.5145 627449.4969 732375.3286 1.089209064 0.91445099 0.64624519 0.571313438 0.81476096 0.917260868 1.054828728 1.000034389 0.85673216 1 19.48222367 -6.351130996 3.541847931 0.97792449 0.790503276 0.246141674 0.140007289 0.371699062 8.833208876 0.057356313 0.050398304 4.46E-07 6.351130996 -0.187421214 FHSPST(ph)T(ph)WSPNKDTPQEK ddPTM_HeLa_A485_30min_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 FHS(0.345)PS(0.412)T(0.449)T(0.431)WS(0.358)PNKDT(0.005)PQEK 55.453 0.025779 108970000 217430 149650 87467 351720 226150 156270 348330 297610 162510 475150 TRUE FALSE FALSE 265796.5534 167150.2657 119824.6831 370933.573 203633.7119 164452.0556 273906.4499 224620.6809 195124.2664 356703.8495 0.745146299 0.468596753 0.335922035 1.039892262 0.570876127 0.461032467 0.767881957 0.629711962 0.547020355 1 18.44436726 -10.26425507 4.137103742 1.000346093 0.616828065 0.272021381 0.187235104 128004472.4 247.7834658 422355.1337 0.045070602 5.44E-11 10.26425507 -0.383518028 FHSS(ph)DS(ph)EEEEHKK ddPTM_HeLa_A485_30min_R1 2 FHSSDSEEEEHKK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 FHS(0.144)S(0.856)DS(1)EEEEHKK;FHS(0.426)S(0.574)DS(1)EEEEHKK ; 190.11 2.61E-17 2441150000 1478320 877070 575930 2938000 1484520 1224060 2273130 1737380 1005030 3975200 TRUE FALSE FALSE 1807167.184 979635.707 788990.4734 3098495.501 1336715.976 1288149.889 1787457.206 1311284.831 1206730.302 2984255.798 0.605567118 0.328268008 0.264384331 1.038280801 0.447922721 0.431648617 0.598962464 0.439400949 0.404365572 1 21.50893977 -10.88245835 2.67181841 1.239382302 0.506625577 0.345312145 0.20384035 63913473.91 40556965.7 96755037.91 0.050462769 1.31E-11 10.88245835 -0.732756725 FHTS(ph)Y(ph)DK ddPTM_HeLa_A486_30min_R1 1 FHTSYDK 7 0 P48426;P48426-2 P48426 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 2 0 FHT(0.139)S(0.93)Y(0.93)DK 40.002 0.012118 0 1598.8 1227.3 1952.9 1025.6 1172.7 1776.2 0 2012.2 1155 1594.7 TRUE FALSE FALSE 1486.732376 1130.044278 2709.11518 2387.648631 1025.609031 1557.070503 0 1554.065986 1255.11633 1195.37674 1.243735407 0.945345714 2.266327501 1.997402618 0.857979745 1.302577213 0 1.300063765 1.049975533 1 10.22324966 -5.779501561 24.96441551 0.906721298 1.612150492 0.332705201 0.481859691 293.403396 405522.059 0.156566119 0.177878587 1.66E-06 5.779501561 0.705429194 FHVEEEGK ddPTM_HeLa_A485_30min_R1 2 FHVEEEGK 8 0 P00558;P00558-2;P07205 P00558 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 0 ; ; 107.47 0.0032402 47273000 88743 83894 61716 127737 108965 97032 132920 109435 83407 193782 FALSE FALSE TRUE 108483.5742 93704.67352 84547.31662 134714.9489 98116.062 102112.4455 104520.5561 82595.89466 100146.0198 145475.7137 0.745716047 0.64412589 0.581178222 0.926030507 0.674449772 0.701920911 0.718474263 0.567764148 0.688403702 1 17.1504188 -10.91748844 2.314096834 1.197848514 0.692886291 0.486622722 0.094210084 16002588.81 7506784.873 17152960.39 0.023597081 1.21E-11 10.91748844 -0.504962224 FHVEEEGK ddPTM_HeLa_A486_30min_R1 2 FHVEEEGK 8 0 P00558;P00558-2;P07205 P00558 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 0 ; ; 138.54 0.0015504 477730000 464510 459310 238250 202196 547230 531220 580100 544740 420100 784660 FALSE FALSE TRUE 431950.2477 422912.6028 330506.7806 470722.5064 478591.3107 465683.4774 434952.8443 420714.5936 456514.6062 588176.0287 0.734389412 0.719023867 0.561918141 0.800308893 0.813687208 0.791741681 0.73949434 0.715286875 0.776153029 1 19.16588846 -14 0.20611549 2.22256631 0.699354939 0.598627 0.065563363 108.4688863 1.078626441 54.74689543 0.15911544 1.00E-14 14 -1.52321137 FHVEEEGKGK ddPTM_HeLa_A485_30min_R1 2 FHVEEEGKGK 10 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 143.61 2.02E-05 168938000 313276 333633 206172 388725 524074 524663 825183 1032626 330201 638761 FALSE FALSE TRUE 382963.1654 372648.4771 282443.6023 409960.0624 471895.3524 552133.5434 648875.9109 779372.8544 396469.3119 479529.6382 0.798622514 0.777112502 0.589001346 0.854921218 0.984079637 1.151406502 1.353150794 1.625286098 0.826787919 1 18.87126046 -5.992878203 1.742857509 1.248531551 0.73061627 0.493913632 0.207274467 0.273499659 1.684088647 0.078396304 0.087036156 1.02E-06 5.992878203 -0.517915281 FHVEEEGKGK ddPTM_HeLa_A486_30min_R1 2 FHVEEEGKGK 10 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 145.25 1.84E-05 121400700 388363 295924 154355.3 242570.7 441985 413437 602308 614328 268562.6 635386 FALSE FALSE TRUE 361140.7592 272473.9045 214125.8059 564716.8484 386547.12 362431.3465 451604.1678 474458.9251 291841.8224 476281.2099 0.758251117 0.572086194 0.449578529 1.185679461 0.81159431 0.760960833 0.948188084 0.996173931 0.612751073 1 18.86145411 -5.242621537 24.99668784 0.894290031 0.591183376 0.433191766 0.161732967 791.9950404 1052045.493 0.043109078 0.074500083 5.72E-06 5.242621537 -0.303106655 FHVGS(ph)AESMLHVRPGGYTPQR ddPTM_HeLa_A485_30min_R1 2 FHVGSAESMLHVRPGGYTPQR 21 1 O75140;A0A2R8Y5T1;A0A2R8Y7U0;H0Y770;A0A2R8Y6H3;A0A2R8Y721;A0A2R8Y5K9;A0A5F9UWT1;A0A2R8Y842;A0A2R8YEW8;A0A2R8Y6V4;A0A2R8Y7U6;A0A2R8Y5E9;A0A2R8YF97;A0A2R8Y6H8;A0A2R8YF50;O75140-6;O75140-8;O75140-5;O75140-1;O75140-4;O75140-9;H7C1T0 O75140 DEPDC5 DEP domain-containing protein 5 1 0 FHVGS(1)AESMLHVRPGGYTPQR;FHVGS(1)AESMLHVRPGGYTPQR ; 273.56 9.51E-73 1397310000 467740 678780 590570 424990 705870 537920 692320 732690 527120 626070 TRUE FALSE FALSE 571787.1493 758157.4164 809046.4187 448206.1276 635591.1043 566084.6594 544400.1763 552996.6287 632908.149 470002.271 1.216562525 1.613093092 1.721367041 0.953625451 1.352314964 1.204429626 1.158292651 1.176582887 1.346606576 1 18.8423082 -5.257570585 24.99856724 1.186132359 1.526616099 0.46789495 0.168764299 294.6290929 1903765.415 0.045156443 0.074542813 5.53E-06 5.257570585 0.34048374 FHVGS(ph)AESMLHVRPGGYTPQR ddPTM_HeLa_A486_30min_R1 2 FHVGSAESMLHVRPGGYTPQR 21 1 O75140;A0A2R8Y5T1;A0A2R8Y7U0;H0Y770;A0A2R8Y6H3;A0A2R8Y721;A0A2R8Y5K9;A0A5F9UWT1;A0A2R8Y842;A0A2R8YEW8;A0A2R8Y6V4;A0A2R8Y7U6;A0A2R8Y5E9;A0A2R8YF97;A0A2R8Y6H8;A0A2R8YF50;O75140-6;O75140-8;O75140-5;O75140-1;O75140-4;O75140-9;H7C1T0 O75140 DEPDC5 DEP domain-containing protein 5 1 0 FHVGS(1)AESMLHVRPGGYTPQR;FHVGS(1)AESMLHVRPGGYTPQR ; 215.79 1.24E-35 1261790000 382610 336480 327280 74173 454890 293610 344290 347650 299900 315780 TRUE FALSE FALSE 355791.0148 309816.0994 454011.5809 172678.4925 397833.4545 257387.3834 258145.0005 268497.6841 325895.5735 236706.6326 1.503088489 1.308861082 1.918034893 0.729504242 1.680702607 1.0873687 1.090569358 1.134305707 1.376791051 1 17.85274061 -5.253720142 24.99972486 1.178777971 1.549881403 0.330240662 0.271823052 756.7254323 2450745.696 0.070583766 0.119375258 5.58E-06 5.253720142 0.371103432 FHVLLNILR ddPTM_HeLa_A485_30min_R1 1 FHVLLNILR 9 0 K7EP61;Q96BD8-2;Q96BD8 K7EP61 SKA1 Spindle and kinetochore-associated protein 1 0 0 69.825 0.035157 15100000 5108.2 4315.2 3639.3 4796.7 4936.2 4624.5 5495.5 5805.1 4531.8 7624.3 FALSE FALSE TRUE 6244.501467 4819.825103 4985.628514 5058.731575 4444.734596 4866.631669 4321.341531 4381.390123 5441.290692 5723.702325 1.090989907 0.842081721 0.871049581 0.88382157 0.776548874 0.850259394 0.754990614 0.765481829 0.950659273 1 12.48273293 -4.261252166 23.48294022 0.843338445 1.090990009 0.462463652 0.075395432 5.382100492 673831.1447 0.017998936 0.101370377 5.48E-05 4.261252166 0.247651564 FHVLLNILR ddPTM_HeLa_A486_30min_R1 1 FHVLLNILR 9 0 K7EP61;Q96BD8-2;Q96BD8 K7EP61 SKA1 Spindle and kinetochore-associated protein 1 0 0 69.812 0.035174 11273000 9281.8 8708 6919 3621.2 10476 8021.3 10683 11370 6618.3 11111 FALSE FALSE TRUE 8631.193751 8017.946366 9598.222097 8430.336605 9162.002395 7031.713561 8010.000407 8781.299205 7191.979573 8328.73328 1.036315303 0.962684972 1.152422796 1.012199133 1.100047521 0.844271671 0.96173093 1.054337906 0.863514214 1 13.02388138 -6.239936765 24.94520553 0.949227046 1.051017559 0.348102435 0.073727537 964.1268887 1118485.21 0.023870156 0.023847859 5.76E-07 6.239936765 0.101790513 FHY(ph)IFNLR ddPTM_HeLa_A485_30min_R1 1 FHYIFNLR 8 0 A0A0C4DFR0;A0A087WYC6;Q96DT5;A0A0J9YY17;H0Y7V4;E7EP17;A0A1C7CYW8;A0A669KB38;A0A075B6F3;Q9NYC9-2;Q96JB1-2;Q8IVF4;Q9NYC9;Q96JB1 A0A0C4DFR0 DNAH11;DNAH8;DNAH9;DNAH10 "Dynein heavy chain 11, axonemal;Dynein heavy chain 9, axonemal;Dynein heavy chain 8, axonemal;Dynein heavy chain 10, axonemal" 1 0 FHY(1)IFNLR 67.035 0.016452 34866000 6519.8 5405.9 3671.3 6563.7 7871.7 6729.8 6891.7 10360 4981.2 9480.5 TRUE FALSE FALSE 7970.107017 6038.07298 5029.466646 6922.258311 7087.965909 7082.161922 5419.231995 7819.193756 5980.88115 7117.185826 1.119839669 0.848379279 0.706665074 0.972611715 0.995894456 0.995078967 0.761429043 1.098635605 0.840343543 1 12.79709119 FIATLQYIVGR ddPTM_HeLa_A485_30min_R1 2 FIATLQYIVGR 11 0 A0A499FJL1;P48147 A0A499FJL1 PREP Prolyl endopeptidase 0 0 ; ; 117.31 0.004486 40376000 37086 41808 46836 38189 59110 33432 51700 47881 37782 54174 FALSE FALSE TRUE 45335.65275 46697.08192 64162.58541 40275.16837 53224.80085 35182.44782 40653.87265 36138.10968 45364.50084 40669.4188 1.114735693 1.148211194 1.577661725 0.990305973 1.30871801 0.865083615 0.999617744 0.888581906 1.115445024 1 15.31165675 -6.258195637 24.99593424 0.96839903 1.229726486 0.396961199 0.15656597 291.8750546 2249160.913 0.051573118 0.049536931 5.52E-07 6.258195637 0.261327455 FICVTPTTCSNTIDLPMS(ph)PR ddPTM_HeLa_A486_30min_R1 1 FICVTPTTCSNTIDLPMSPR 20 0 P40763-2;G8JLH9;P40763 P40763-2 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription 1 0 FICVTPTTCSNTIDLPMS(1)PR 134.37 1.63E-07 73908000 69137 73232 55184 18593 77105 35467 68440 54834 56230 46825 TRUE FALSE FALSE 64290.85332 67428.82961 76552.72268 43285.44364 67433.77192 31091.44214 51315.58812 42349.49522 61104.06167 35099.71522 1.831663104 1.921064863 2.181006945 1.233213528 1.921205671 0.885803259 1.461994429 1.206548114 1.740870582 1 15.0991717 -5.506342856 1.462181497 1.322282508 1.966961885 0.406316109 0.323042041 0.404268398 1.746429257 0.107362461 0.190277858 3.12E-06 5.506342856 0.644679377 FIEFEDS(ph)QEQEKK ddPTM_HeLa_A485_30min_R1 1 FIEFEDSQEQEKK 13 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 FIEFEDS(1)QEQEKK 80.609 0.0029208 125650000 36979 25001 21368 63708 42879 33796 62142 60722 31868 94800 TRUE FALSE FALSE 45204.85097 27924.64947 29272.9124 67188.20672 38609.8162 35565.5063 48864.85405 45829.83429 38263.61529 71168.10466 0.635184135 0.392375905 0.411320669 0.944077505 0.542515729 0.499739405 0.68661171 0.643965924 0.537651178 1 16.11894319 -14 0.253235862 3.528624996 0.553273573 0.40292975 0.149912921 196.8110855 1.948546095 258.1524308 0.218239811 1.00E-14 14 -2.975351423 FIEFEDS(ph)QEQEKK ddPTM_HeLa_A486_30min_R1 2 FIEFEDSQEQEKK 13 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 FIEFEDS(1)QEQEKK;FIEFEDS(1)QEQEKK ; 167.05 3.65E-12 373770000 366210 344660 187073 213881 314890 470400 581980 535440 284460 806270 TRUE FALSE FALSE 340540.5701 317347.8864 259512.6756 497925.7769 275393.56 412366.8307 436362.4484 413532.0006 309117.2218 604374.7441 0.5634593 0.525084626 0.429390338 0.823869266 0.45566689 0.682303215 0.722006425 0.684231108 0.511466147 1 19.20508385 -14 0.181071709 2.597223508 0.524088321 0.504647352 0.119399199 110.5657273 1.066116284 63.73925969 0.361329422 1.00E-14 14 -2.073135187 FIEIAAR ddPTM_HeLa_A485_30min_R1 2 FIEIAAR 7 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4;A0A1W2PPE9 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 170.17 0.00070125 158949000 154945 217710 222760 161039 242940 222600 244400 288830 199113 244600 FALSE FALSE TRUE 189411.9807 243169.2907 305168.1938 169836.1528 218752.0406 234254.9918 192181.9434 217993.9896 239073.1527 183625.7215 1.031511158 1.324265951 1.661903307 0.924903937 1.191293021 1.275719926 1.046595988 1.187164782 1.301958956 1 17.48640863 -5.282433231 24.97433544 1.145153508 1.337730842 0.214816156 0.179961668 1294.887416 1540397.921 0.050942476 0.075642228 5.22E-06 5.282433231 0.192577335 FIEIAAR ddPTM_HeLa_A486_30min_R1 1 FIEIAAR 7 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4;A0A1W2PPE9 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 154.09 0.002764 46925000 75573 73896 71856 25182 95765 74281 81485 79215 80881 87849 FALSE FALSE TRUE 70275.72296 68040.21184 99680.56757 58624.96863 83753.26073 65116.96545 61096.59114 61179.47375 87891.8302 65851.0386 1.067192325 1.033244324 1.5137281 0.890266424 1.271859374 0.98885252 0.927799962 0.9290586 1.334706818 1 16.00691857 -6.287917596 24.75280705 1.024882009 1.15367283 0.090244657 0.187480242 1647.280374 1539931.946 0.064618314 0.057006702 5.15E-07 6.287917596 0.128790821 FIGS(ph)PR ddPTM_HeLa_A485_30min_R1 6 FIGSPR 6 0 P23443-3;P23443-5;P23443-2;P23443;K7ERJ3;P23443-4 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR ;;;;; 89.752 0.015919 2352499000 2393060 3218280 3176780 2336700 3162630 2492850 2763340 2681540 2343140 2858320 TRUE FALSE FALSE 2925387.941 3594629.851 4352003.119 2464348.004 2847747.453 2623371.771 2172929.835 2023888.111 2813386.705 2145793.427 1.363312938 1.675198463 2.028155676 1.148455379 1.327130289 1.222564921 1.012646328 0.943188699 1.311117216 1 21.03307977 -5.289097528 23.62227146 1.141701473 1.687519899 0.634574388 0.191600274 228.4713843 195132.2494 0.05564618 0.082566274 5.14E-06 5.289097528 0.545818426 FIGS(ph)PR ddPTM_HeLa_A486_30min_R1 6 FIGSPR 6 0 P23443-3;P23443-5;P23443-2;P23443;K7ERJ3;P23443-4 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR;FIGS(1)PR ;;;;; 92.47 0.014915 2128540000 3711200 4378200 3570700 1133119 4466390 3567220 3759230 3704560 3534770 3786560 TRUE FALSE FALSE 3451064.045 4031255.487 4953370.667 2637958.297 3906173.719 3127132.665 2818630.893 2861112.558 3841166.71 2838380.73 1.215856636 1.420265944 1.74513962 0.929388461 1.376197942 1.10173122 0.993041865 1.008008731 1.353295092 1 21.43663669 -5.272264114 24.98742482 1.115165408 1.456405268 0.431416604 0.184860593 672.4698094 1552303.778 0.051803838 0.077692175 5.34E-06 5.272264114 0.34123986 FIHQQPQSS(ph)SPVYGSSAK ddPTM_HeLa_A485_30min_R1 2 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 FIHQQPQS(0.03)S(0.9)S(0.07)PVYGSSAK;FIHQQPQS(0.004)S(0.66)S(0.336)PVYGSSAK ; 207.43 1.37E-25 3498610000 712450 857710 682750 695810 1008100 869180 1089030 1181060 766620 968740 TRUE FALSE FALSE 870932.0446 958011.7234 935327.6366 733820.3384 907730.0243 914688.9208 856349.8439 891403.1832 920473.6021 727250.9463 1.197567427 1.317305571 1.286114018 1.009033185 1.248166165 1.257734934 1.177516301 1.225716086 1.265689109 1 19.47209374 -10.73159627 2.5836824 0.955475314 1.219885726 0.402431326 0.080618343 11869325.02 9128711.755 3395588.358 0.021280425 1.86E-11 10.73159627 0.264410412 FIHQQPQSS(ph)SPVYGSSAK ddPTM_HeLa_A486_30min_R1 2 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 FIHQQPQS(0.103)S(0.64)S(0.257)PVYGSSAK;FIHQQPQS(0.032)S(0.865)S(0.104)PVYGSSAK ; 180.63 7.58E-18 3331190000 3889900 3663100 2665320 880310 4005300 3683100 4448000 4112700 3222860 4161600 TRUE FALSE FALSE 3617238.097 3372822.615 3697403.284 2049406.168 3502917.926 3228716.569 3335063.354 3176327.99 3502220.1 3119508.273 1.159553937 1.081203292 1.185251957 0.656964492 1.12290708 1.035008177 1.069099057 1.018214318 1.122683383 1 21.5728872 FIHQQPQSSS(ph)PVYGSSAK ddPTM_HeLa_A485_30min_R1 4 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 FIHQQPQS(0.002)S(0.093)S(0.904)PVYGSSAK;FIHQQPQSS(0.003)S(0.997)PVYGSSAK;FIHQQPQSS(0.002)S(0.998)PVYGSSAK;FIHQQPQSS(0.009)S(0.991)PVYGSSAK ;;; 246.5 9.14E-46 13812470000 8845100 9848480 7803030 7942240 12250360 10598240 13005780 13901700 9069010 11945330 TRUE FALSE FALSE 10812661.98 11000174.07 10689695.51 8376104.46 11030671.14 11153147.46 10226988.86 10492286.28 10889077.12 8967579.069 1.205750392 1.226660393 1.192038055 0.934043001 1.230061208 1.243718887 1.140440333 1.170024395 1.21427166 1 23.09628713 -11.10221726 2.365441991 0.701897316 1.170823861 0.270612965 0.085139332 13064989.61 3843953.788 20945961.33 0.021818387 7.90E-12 11.10221726 0.468926545 FIHQQPQSSS(ph)PVYGSSAK ddPTM_HeLa_A486_30min_R1 4 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 FIHQQPQS(0.001)S(0.013)S(0.986)PVYGSSAK;FIHQQPQSS(0.004)S(0.996)PVYGSSAK;FIHQQPQSS(0.001)S(0.999)PVYGSSAK;FIHQQPQSS(0.083)S(0.917)PVYGSSAK ;;; 284.76 1.12E-69 11923150000 7204180 6873200 4797100 1695890 7060790 6632130 8243860 8259910 5608350 6825290 TRUE FALSE FALSE 6699204.184 6328542.6 6654665.591 3948117.626 6175159.879 5813925.231 6181159.033 6379308.806 6094486.294 5116192.959 1.309411947 1.236963236 1.30070653 0.771690524 1.206983382 1.136377239 1.208155963 1.246885889 1.191215097 1 22.28663925 -13.99996548 0.017097481 2.91E-07 2.024857615 0.0946301 0.146801205 15054.86665 19.46497584 1489.024994 888.0302594 1.00E-14 13.99996548 2.024857324 FIHQQPQSSSPVY(ph)GSSAK ddPTM_HeLa_A485_30min_R1 1 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 FIHQQPQS(0.003)S(0.006)S(0.004)PVY(0.893)GS(0.077)S(0.017)AK 102.89 0.0034627 403670000 170380 240170 163960 161720 249850 253360 289130 425520 198600 245100 TRUE FALSE FALSE 208280.4432 268255.7923 224615.6269 170554.3541 224974.0567 266625.5378 227355.0135 321160.5528 238457.1983 184001.0807 1.131952282 1.457903352 1.220729933 0.926920393 1.222677909 1.449043325 1.235617816 1.745427535 1.295955423 1 17.48935471 -6.170653391 6.182912312 1.384475799 1.191653447 0.101054418 0.214024948 0.465856936 26.10582588 0.07067361 0.070688434 6.75E-07 6.170653391 -0.192822352 FIHQQPQSSSPVY(ph)GSSAK ddPTM_HeLa_A486_30min_R1 2 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 FIHQQPQSSSPVY(1)GSSAK;FIHQQPQSSSPVY(1)GSSAK ; 241.08 3.83E-44 929760000 727970 655160 419820 98395 662420 613070 688450 720010 487900 598880 TRUE FALSE FALSE 676943.0622 603242.7355 582385.5472 229068.5326 579333.1068 537435.6566 516192.5283 556079.4407 530191.5648 448916.5499 1.507948554 1.343774774 1.297313604 0.510269743 1.290514032 1.197183879 1.149862994 1.238714502 1.181047045 1 18.77608776 -5.012156729 24.95033124 1.091793677 1.399532444 0.310369303 0.210945478 736.5750918 1511747.258 0.05783366 0.107608787 9.72E-06 5.012156729 0.307738767 FIIGSVS(ph)EDNSEDEISNLVK ddPTM_HeLa_A485_30min_R1 1 FIIGSVSEDNSEDEISNLVK 20 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087X2F8;A0A087X126;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 FIIGS(0.063)VS(0.456)EDNS(0.399)EDEIS(0.081)NLVK 63.918 0.0088453 42987000 13038 11344 10286 14130 16937 15367 18139 18915 11228 19840 TRUE FALSE FALSE 15938.25812 12670.58212 14091.21944 14901.88612 15250.69281 16171.59236 14263.45447 14276.06659 13481.35661 14894.25313 1.070094484 0.850702752 0.946084326 1.000512479 1.023931357 1.085760543 0.957648185 0.958494962 0.905138143 1 13.86246816 -3.913517234 20.40270971 0.972883722 6.722352371 0.19288089 0.06125414 992.0667524 234988.1826 0.01578033 1061.145678 0.000122035 3.913517234 5.749468649 FIIGSVSEDNS(ph)EDEISNLVK ddPTM_HeLa_A485_30min_R1 3 FIIGSVSEDNSEDEISNLVK 20 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087X2F8;A0A087X126;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 FIIGS(0.019)VS(0.016)EDNS(0.965)EDEISNLVK;FIIGSVS(0.001)EDNS(0.999)EDEISNLVK;FIIGSVSEDNS(1)EDEISNLVK ;; 197.28 2.69E-26 404171000 176767 189392 169756 219074 206568 199462 260830 287516 186133 296412 TRUE FALSE FALSE 216088.2093 211539.7469 232555.8085 231041.4579 186001.3646 209905.5219 205101.5397 217002.2502 223488.1858 222521.9435 0.971087192 0.950646681 1.045091576 1.038286177 0.835878753 0.943302573 0.921713771 0.975194836 1.004342234 1 17.76358809 -3.800911793 16.37883267 0.96542857 11.30804063 0 0.058190605 4215.870268 345641.5583 0.014830817 5667.552644 0.000158157 3.800911793 10.34261206 FIIGSVSEDNS(ph)EDEISNLVK ddPTM_HeLa_A486_30min_R1 4 FIIGSVSEDNSEDEISNLVK 20 0 Q13085;Q13085-4;A0A0C4DGT1;A0A087X2F8;A0A087X126;A0A087WYK6 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 FIIGS(0.02)VS(0.122)EDNS(0.838)EDEIS(0.02)NLVK;FIIGS(0.001)VS(0.031)EDNS(0.968)EDEISNLVK;FIIGSVSEDNS(1)EDEISNLVK;FIIGSVSEDNS(1)EDEISNLVK ;;; 269.74 8.20E-60 535861000 431223 387677 242320.1 153216.7 393938 414992 469109 468420 327063 571067 TRUE FALSE FALSE 400996.4945 356956.0626 336152.9323 356696.2207 344526.6227 363794.5064 351732.9665 361770.9915 355413.0842 428068.1062 0.936758634 0.8338768 0.785279089 0.83326979 0.804840673 0.84985193 0.821675246 0.845124844 0.830272284 1 18.70748082 -10.54870897 2.640626513 1.010598245 0.835199005 0.623339087 0.037754272 8944981.5 8595885.237 671113.4455 0.010161587 2.83E-11 10.54870897 -0.17539924 FIIPNVVK ddPTM_HeLa_A485_30min_R1 2 FIIPNVVK 8 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 119.89 0.0052233 83618000 91840 114490 99139 104802 145713 135680 151377 161081 110325 171162 FALSE FALSE TRUE 112269.4912 127878.6096 135814.6416 110527.0679 131205.3021 142783.995 119034.0673 121575.6322 132466.2155 128494.4634 0.873730184 0.995207157 1.056968822 0.860169886 1.02109693 1.111207372 0.926375068 0.946154635 1.030909909 1 16.97134667 -4.260672835 23.90449642 0.992695067 0.873730124 0.22621227 0.066805892 55.76520939 1738391.526 0.01674728 0.097922841 5.49E-05 4.260672835 -0.118964943 FIIPNVVK(ac)YSPNCK ddPTM_HeLa_A485_30min_R1 1 FIIPNVVKYSPNCK 14 1 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2 P00338 LDHA L-lactate dehydrogenase A chain 0 1 FIIPNVVK(1)YSPNCK 202.81 1.13E-14 8726600 13495 16288 16214 17796 24967 18441 23889 23055 16881 24897 FALSE TRUE FALSE 16496.91619 18192.73991 22212.23332 18768.15042 22481.19782 19406.54224 18784.91999 17400.7251 20268.86186 18690.6361 0.882630003 0.973361197 1.188415055 1.004147228 1.202805389 1.038302931 1.005044446 0.930986244 1.084439382 1 14.19002805 -9.880327882 13.78765675 0.999993883 1.03745465 0.010410173 0.096908289 0 0 0.095790058 0.023232501 1.32E-10 9.880327882 0.037460767 FIIPNVVK(ac)YSPNCK ddPTM_HeLa_A486_30min_R1 1 FIIPNVVKYSPNCK 14 1 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2 P00338 LDHA L-lactate dehydrogenase A chain 0 1 FIIPNVVK(1)YSPNCK 122.51 0.00073791 7616900 9551 11707 8156.9 4474.7 12714 12551 13449 13126 8881 12153 FALSE TRUE FALSE 8881.524221 10779.29468 11315.47013 10417.32774 11119.29157 11002.58523 10083.91795 10137.49634 9650.812231 9109.809697 0.974940698 1.183262334 1.242119265 1.143528579 1.220584396 1.207773334 1.106929594 1.112810989 1.05938681 1 13.1532052 -7.717568296 1.189961079 1.003459591 1.165771188 0.343915197 0.070782869 0.493330398 1.398735538 0.067090455 0.02204365 1.92E-08 7.717568296 0.162311597 FILLVSGFCPR ddPTM_HeLa_A485_30min_R1 2 FILLVSGFCPR 11 0 Q8WZ82 Q8WZ82 OVCA2 Ovarian cancer-associated gene 2 protein 0 0 ; ; 191.85 1.04E-09 39149000 36504 34663 38771 32333 46755 38062 49572 48952 26049 48758 FALSE FALSE TRUE 44624.18886 38716.53632 53114.0063 34099.26992 42099.90803 40054.86746 38980.53723 36946.44525 31276.79536 36603.52792 1.21912262 1.057726906 1.451062488 0.931584245 1.150159846 1.094289806 1.06493935 1.009368423 0.854474886 1 15.15969508 -6.56150036 0.63723711 0.937146181 1.200033797 0.345650533 0.127147638 0.903126942 0.764724537 0.10560069 0.086585122 2.74E-07 6.56150036 0.262887615 FILLVSGFCPR ddPTM_HeLa_A486_30min_R1 1 FILLVSGFCPR 11 0 Q8WZ82 Q8WZ82 OVCA2 Ovarian cancer-associated gene 2 protein 0 0 201.58 4.66E-15 0 10228 14873 14364 4918.6 17341 13400 17125 15488 14511 14381 FALSE FALSE TRUE 9511.070017 13694.40931 19926.12548 11450.74937 15165.93008 11746.84424 12840.14387 11961.7205 15768.82516 10779.904 0.882296356 1.270364682 1.848451108 1.062231109 1.406870607 1.08969841 1.191118574 1.10963145 1.462798293 1 13.39605671 -6.263322885 24.98992745 1.17878064 1.310649359 0.051410108 0.258999626 583.3305947 7739457.273 0.089545642 0.083117789 5.45E-07 6.263322885 0.131868719 FILNLPTFSVR ddPTM_HeLa_A485_30min_R1 2 FILNLPTFSVR 11 0 A0A087WVV1;P49721 A0A087WVV1 PSMB2 Proteasome subunit beta type-2 0 0 ; ; 290.68 6.73E-58 336480000 310750 399690 406190 334520 497500 343410 415800 398860 301850 502390 FALSE FALSE TRUE 379875.2654 446430.2687 556456.584 352793.9806 447967.1532 361390.4166 326960.9332 301038.9596 362428.5263 377153.4188 1.007216815 1.183683473 1.475411746 0.935412389 1.187758432 0.958205331 0.866917591 0.79818701 0.960957818 1 18.52479198 -6.277426792 1.672145893 0.885947806 1.180452993 0.406264701 0.143530807 0.353324174 1.956779961 0.062257917 0.056019751 5.28E-07 6.277426792 0.294505187 FILNLPTFSVR ddPTM_HeLa_A486_30min_R1 2 FILNLPTFSVR 11 0 A0A087WVV1;P49721 A0A087WVV1 PSMB2 Proteasome subunit beta type-2 0 0 ; ; 272.82 5.93E-46 331290000 324800 372900 343720 106149 381890 338400 371000 362760 348360 385780 FALSE FALSE TRUE 302033.1973 343350.0459 476817.5891 247120.2365 333989.7952 296651.6486 278171.876 280167.467 378556.1253 289178.177 1.044453632 1.187330419 1.648871274 0.854560462 1.154961964 1.02584383 0.961939379 0.968840284 1.309075703 1 18.14159916 -5.294808233 24.97204598 1.039052123 1.282930124 0.289132596 0.182451105 796.6810556 596205.6995 0.050983858 0.075627332 5.07E-06 5.294808233 0.243878002 FILPEGASQGMT(ph)PFR ddPTM_HeLa_A486_30min_R1 1 FILPEGASQGMTPFR 15 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314;H0Y7I1 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 FILPEGAS(0.062)QGMT(0.938)PFR 111.7 0.0010229 22751000 47522 51856 50156 18668 62572 51119 51380 53808 43799 42525 TRUE FALSE FALSE 44190.9532 47746.7417 69577.74642 43460.04743 54723.6363 44812.45752 38524.18056 41557.09302 47595.53259 31876.46321 1.386319207 1.497868236 2.182731063 1.363389882 1.716741156 1.405816487 1.208546265 1.303692092 1.493124638 1 14.96020395 -6.44835033 3.91700194 1.278085441 1.637099354 0.348062861 0.243244757 0.287369045 8.403452097 0.090955509 0.077206292 3.56E-07 6.44835033 0.359013913 FINWFSHHLSNFQFR ddPTM_HeLa_A485_30min_R1 2 FINWFSHHLSNFQFR 15 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 0 ; ; 304.28 1.18E-68 98786000 52474 63164 99618 27020 94750 38818 75211 48309 43815 58544 FALSE FALSE TRUE 64146.66027 70550.48035 136470.8437 28496.03418 85316.35731 40850.45046 59141.55543 36461.142 52608.26861 43950.05822 1.459535274 1.605242022 3.105134536 0.64837307 1.941211474 0.929474319 1.345653631 0.829603952 1.197001113 1 15.42357746 -5.290597576 24.99669198 1.154995701 2.011498524 0.395066194 0.525302669 726.4384293 622758.3514 0.144821284 0.214842103 5.12E-06 5.290597576 0.856502822 FINWFSHHLSNFQFR ddPTM_HeLa_A486_30min_R1 2 FINWFSHHLSNFQFR 15 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 0 ; ; 309.87 2.42E-81 83722000 42503 71075 73991 14888.8 79301 65279 62999 60495 66988 44718 FALSE FALSE TRUE 39523.75919 65442.75815 102642.2967 34661.87884 69354.32913 57225.54069 47235.98386 46721.6091 72794.57378 33520.32173 1.179098444 1.952330848 3.062091634 1.034055673 2.069023373 1.707189482 1.409174537 1.393829375 2.171654984 1 15.03274838 -6.226324065 1.150539237 1.525700531 1.93399457 0.06912417 0.583755129 1.410305308 3.870935105 0.300157775 0.279459618 5.94E-07 6.226324065 0.408294038 FIPCS(ph)PFSDYVYKR ddPTM_HeLa_A485_30min_R1 2 FIPCSPFSDYVYKR 14 1 Q14195-2;Q14195 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 FIPCS(0.893)PFS(0.107)DYVYKR;FIPCS(0.998)PFS(0.002)DYVYKR ; 93.754 0.00066865 382990000 416590 544790 472870 333300 594260 569000 715660 823560 431610 475730 TRUE FALSE FALSE 509259.0083 608498.4515 647804.2908 351507.335 535093.3878 598791.9602 562753.3946 621580.6187 518230.168 357139.2662 1.425939561 1.703812795 1.813870252 0.984230434 1.498276551 1.676634347 1.575725348 1.740443232 1.451059061 1 18.44612724 -8.028151537 22.92008858 0.999999992 1.553151562 0.360150181 0.220085028 1181.577324 962003.0536 0.218302402 0.056365438 9.37E-09 8.028151537 0.55315157 FIPCS(ph)PFSDYVYKR ddPTM_HeLa_A486_30min_R1 2 FIPCSPFSDYVYKR 14 1 Q14195-2;Q14195 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 FIPCS(0.972)PFS(0.028)DYVYKR;FIPCS(0.977)PFS(0.023)DYVYKR ; 117 8.59E-05 323890000 482360 526780 405430 227690 731830 475090 670090 661310 386720 592310 TRUE FALSE FALSE 448549.0549 485036.0343 562423.3538 530073.8268 640037.0574 416478.2262 502426.3945 510744.1493 420241.201 443991.7207 1.010264458 1.092443872 1.266742886 1.193882233 1.441551785 0.938031514 1.13161208 1.150346111 0.946506841 1 18.76017325 -6.310375459 24.99987076 1.048840538 1.198207926 0.311321769 0.123584653 569.3694604 290870.7111 0.045021903 0.039705648 4.89E-07 6.310375459 0.149367388 FIPHENGVHSIDVK(ac)FNGAHIPGSPFK ddPTM_HeLa_A485_30min_R1 1 FIPHENGVHSIDVKFNGAHIPGSPFK 26 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 0 1 FIPHENGVHSIDVK(1)FNGAHIPGSPFK 40.756 0.035988 14601000 8225.8 9581.7 8202.7 6369.9 16393 10851 14564 16981 10579 11900 FALSE TRUE FALSE 10055.60083 10702.19647 11237.22007 6717.871508 14760.85536 11419.14158 11452.28242 12816.38312 12702.10826 8933.549003 1.125599784 1.197978145 1.257867402 0.751982387 1.652294665 1.278231258 1.281940964 1.434635118 1.421843464 1 13.12501771 -5.769707169 24.99997916 1.360082113 1.104009173 0.289994336 0.198523913 236.5357737 715230.5104 0.059039434 0.068062413 1.70E-06 5.769707169 -0.256072939 FIQAWQSLPEFGITHFIAR ddPTM_HeLa_A485_30min_R1 1 FIQAWQSLPEFGITHFIAR 19 0 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34;Q96AC1-2;H0YJB6 Q96AC1 FERMT2 Fermitin family homolog 2 0 0 145.91 4.74E-10 17224000 3858.4 4712.8 4802.2 3414.3 5390 4033.9 4705.4 4856.1 3437.1 5503.2 FALSE FALSE TRUE 4716.687769 5263.920964 6578.733616 3600.814564 4853.352675 4245.108766 3700.05285 3665.133861 4126.894443 4131.353519 1.141680988 1.274139562 1.592391836 0.871582291 1.174760923 1.02753462 0.895603059 0.887150868 0.998920674 1 12.0123988 -5.277773506 24.99995728 0.981321109 1.329877695 0.602885557 0.132631073 550.8336105 843068.9004 0.03840684 0.057150713 5.28E-06 5.277773506 0.348556585 FIQAWQSLPEFGITHFIAR ddPTM_HeLa_A486_30min_R1 2 FIQAWQSLPEFGITHFIAR 19 0 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34;Q96AC1-2;H0YJB6 Q96AC1 FERMT2 Fermitin family homolog 2 0 0 ; ; 185.55 2.39E-18 23490600 17410 26479 24760 5668.5 30902 23156 25350 27864 22470 25147 FALSE FALSE TRUE 16189.64891 24380.70761 34347.7351 13196.55447 27025.98301 20299.24815 19007.16188 21519.97547 24417.71769 18850.02752 0.858866062 1.293404351 1.822158353 0.700081443 1.433737059 1.076881619 1.008336028 1.141641594 1.295367748 1 14.20227901 -5.277381716 24.99931819 1.109530578 1.321669168 0.121618448 0.282330203 1842.183175 2888739.536 0.078622795 0.117055816 5.28E-06 5.277381716 0.21213859 FIQELSGSS(ph)PK ddPTM_HeLa_A485_30min_R1 4 FIQELSGSSPK 11 0 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 FIQELSGS(0.001)S(0.999)PK;FIQELSGS(0.001)S(0.999)PK;FIQELSGS(0.026)S(0.974)PK;FIQELSGSS(1)PK ;;; 236.42 1.12E-21 3328800000 4856170 4867160 3324950 8033370 5996100 5244050 9045580 8283990 4134840 10959700 TRUE FALSE FALSE 5936408.263 5436332.023 4554987.368 8472212.662 5399107.23 5518620.349 7112917.937 6252328.464 4964664.461 8227648.488 0.721519432 0.66073946 0.553619588 1.029724674 0.656215107 0.6707409 0.864514077 0.759916819 0.60341232 1 22.97204873 -11.07165701 2.490262724 1.410018221 0.728137581 0.286747224 0.130241965 14239744.24 5218379.451 33134642.76 0.033062031 8.48E-12 11.07165701 -0.68188064 FIQELSGSS(ph)PK ddPTM_HeLa_A486_30min_R1 5 FIQELSGSSPK 11 0 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 FIQELS(0.001)GS(0.037)S(0.963)PK;FIQELSGSS(1)PK;FIQELSGS(0.001)S(0.999)PK;FIQELSGSS(1)PK;FIQELSGS(0.002)S(0.998)PK ;;;; 236.05 1.15E-21 2919955000 7491662 7201054 3403576 4750144 6120031 8124121 10757693 9803387 5360977 14643530 TRUE FALSE FALSE 6966535.181 6630416.255 4721531.778 11058575.29 5352399.645 7121849.551 8066004.428 7571369.787 5825670.803 10976694.77 0.63466602 0.604044878 0.430141484 1.007459487 0.487614875 0.648815486 0.734829982 0.689767725 0.530730873 1 23.38794037 -11.17256945 2.418954787 1.930275797 0.644320189 0.337911999 0.150729818 19533321.82 5425874.063 99217570.9 0.038161312 6.72E-12 11.17256945 -1.285955608 FIQELSGSS(ph)PKR ddPTM_HeLa_A485_30min_R1 2 FIQELSGSSPKR 12 1 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 FIQELS(0.011)GS(0.141)S(0.848)PKR;FIQELSGS(0.001)S(0.999)PKR ; 173.19 5.52E-11 745980000 374440 411220 341690 509240 463870 485150 721550 698880 385660 747280 TRUE FALSE FALSE 457732.8862 459308.6019 468095.3499 537058.4917 417685.4741 510551.7038 567384.948 527478.5842 463058.4245 560996.8487 0.815927732 0.81873651 0.83439925 0.957328892 0.744541569 0.910079451 1.01138705 0.940252312 0.825420723 1 19.09763314 -6.508870495 24.52665366 0.942349939 0.83889437 0.375568102 0.067564556 589.4550844 1032064.422 0.024238276 0.020532875 3.10E-07 6.508870495 -0.103455569 FIQELSGSS(ph)PKR ddPTM_HeLa_A486_30min_R1 2 FIQELSGSSPKR 12 1 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 FIQELSGS(0.003)S(0.997)PKR;FIQELS(0.001)GS(0.485)S(0.514)PKR ; 178.85 5.29E-13 828980000 534040 515160 252980 199387 515350 529260 646520 608970 407770 811220 TRUE FALSE FALSE 496606.5538 474336.8454 350940.631 464183.0125 450709.9976 463965.2823 484753.8578 470320.8247 443115.8319 608085.2318 0.816672611 0.780049935 0.577124082 0.763351892 0.741195434 0.762993834 0.797180777 0.773445563 0.728706781 1 19.21391403 -14 0.300247549 3.105982685 0.734495564 0.591444705 0.062494157 194.776716 1.805261458 258.0556938 0.065354057 1.00E-14 14 -2.371487122 FIQENVFVAANHNGS(ph)PLSIK ddPTM_HeLa_A485_30min_R1 3 FIQENVFVAANHNGSPLSIK 20 0 E9PFD2;P11172-4;P11172-2;P11172-3;P11172 E9PFD2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 1 0 FIQENVFVAANHNGS(1)PLSIK;FIQENVFVAANHNGS(0.965)PLS(0.035)IK;FIQENVFVAANHNGS(0.987)PLS(0.013)IK ;; 236.05 3.59E-46 3956089000 581342 669394 603585 696912 880636 745177 968469 1059971 646150 994869 TRUE FALSE FALSE 710659.5223 747673.8053 826876.2088 734982.5379 792956.7877 784193.3155 761547.6865 800011.4503 775826.3782 746866.4675 0.951521528 1.001080967 1.107127237 0.984088281 1.061711594 1.049977941 1.019657087 1.071157275 1.038775219 1 19.5104908 -4.524999293 24.99814125 1.043076146 0.963911364 0.409664739 0.033677274 48.14613938 567580.6988 0.007949159 0.021344135 2.99E-05 4.524999293 -0.079164782 FIQENVFVAANHNGS(ph)PLSIK ddPTM_HeLa_A486_30min_R1 3 FIQENVFVAANHNGSPLSIK 20 0 E9PFD2;P11172-4;P11172-2;P11172-3;P11172 E9PFD2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 1 0 FIQENVFVAANHNGS(1)PLSIK;FIQENVFVAANHNGS(1)PLSIK;FIQENVFVAANHNGS(0.98)PLS(0.02)IK ;; 283.37 7.04E-73 4010731000 1321698 1339711 800578 497797.1 1239570 1280629 1497601 1433206 1060295 1462444 TRUE FALSE FALSE 1229053.795 1233547.421 1110583.242 1158896.806 1084091.572 1122638.014 1122885.39 1106896.28 1152202.224 1096238.503 1.121155471 1.125254602 1.013085417 1.057157546 0.988919445 1.024081905 1.024307563 1.009722133 1.05105068 1 20.06413028 -4.759168154 24.99434339 1.021755804 1.123205078 0.810512214 0.019756835 21.06183979 231766.7959 0.004831025 0.011567942 1.74E-05 4.759168154 0.101449275 FISDKDASIVGFFDDSFSEAHSEFLK ddPTM_HeLa_A485_30min_R1 2 FISDKDASIVGFFDDSFSEAHSEFLK 26 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 308.66 3.16E-105 79654000 64557 62494 44752 63679 78339 71711 98297 102179 53394 104822 FALSE FALSE TRUE 78917.48193 69802.12967 61307.62709 67157.62253 70539.2941 75465.67707 77295.04294 77119.44004 64109.68604 78691.80451 1.002867864 0.887031758 0.779085287 0.85342588 0.896399498 0.959003006 0.982250228 0.980018701 0.814693302 1 16.26392577 -6.113749713 4.145804612 0.947839774 0.873880966 0.169485246 0.070049833 0.415362689 12.11506165 0.024475649 0.024735205 7.70E-07 6.113749713 -0.073958807 FISDKDASIVGFFDDSFSEAHSEFLK ddPTM_HeLa_A486_30min_R1 1 FISDKDASIVGFFDDSFSEAHSEFLK 26 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 175.12 8.66E-14 26676000 122630 99219 57136 38349 106470 104980 124070 117910 85326 123260 FALSE FALSE TRUE 114034.2703 91356.52509 79260.58936 89278.41005 93115.53981 92028.63496 93026.37372 91064.46696 92722.12638 92394.89371 1.23420533 0.988761623 0.857845993 0.966269958 1.007799631 0.996035942 1.006834577 0.985600646 1.003541675 1 16.4955255 -4.264811721 5.915637894 0.976316034 1.241127418 0.766351721 0.042263155 0.063586421 10.47140691 0.011393067 0.068151499 5.43E-05 4.264811721 0.264811383 FISDRES(ph)RR ddPTM_HeLa_A485_30min_R1 1 FISDRESRR 9 2 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 0 FISDRES(1)RR 74.611 0.0083761 832670000 887070 872780 606010 1178300 871410 920770 1283200 1256100 791550 1735500 TRUE FALSE FALSE 1084395.661 974844.0288 830198.3172 1242667.545 784649.3607 968980.0934 1009033.837 948039.5055 950406.8245 1302871.79 0.832311874 0.748227137 0.637206457 0.953791122 0.602246028 0.74372636 0.774469019 0.727653721 0.729470722 1 20.31326369 -10.10317565 5.480976338 1.000003061 0.74807727 0.399846265 0.091897523 3.24E-06 5.30E-07 0.083919201 0.020353149 7.89E-11 10.10317565 -0.251925791 FISDRES(ph)RR ddPTM_HeLa_A486_30min_R1 1 FISDRESRR 9 2 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 0 FISDRES(1)RR 58.172 0.025102 600730000 1334800 1097700 659700 467690 1055700 1201400 1271000 1219800 1023800 1873100 TRUE FALSE FALSE 1241237.413 1010714.254 915153.5074 1088805.956 923284.262 1053183.483 952982.3567 942078.168 1112543.808 1404063.568 0.884032206 0.719849355 0.651789227 0.775467707 0.6575801 0.750096724 0.678731632 0.670965467 0.792374244 1 20.42117682 -8.086764943 5.269816486 0.999982148 0.720331781 0.6134306 0.065997813 0.387125271 22.44988155 0.062037493 0.016144278 8.19E-09 8.086764943 -0.279650367 FISGT(ph)PR ddPTM_HeLa_A486_30min_R1 1 FISGTPR 7 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 0 FIS(0.003)GT(0.997)PR 98.009 0.024219 230220000 592910 679160 554700 202750 732710 584830 657960 639330 553410 605830 TRUE FALSE FALSE 551350.0708 625340.8881 769494.6954 472012.2464 640806.6796 512679.6207 493331.4488 493768.5155 601380.0244 454126.2247 1.214089918 1.377019987 1.694451132 1.039385573 1.411076138 1.12893639 1.086331117 1.087293551 1.324257424 1 18.79273383 -5.921102932 1.228217517 1.128460288 1.391847569 0.271414561 0.174787442 0.609128221 1.932923702 0.074905541 0.092316151 1.20E-06 5.921102932 0.26338728 FITIFGTR ddPTM_HeLa_A485_30min_R1 2 FITIFGTR 8 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 129.55 0.0029213 258100000 254100 251680 295190 273340 331600 221840 288280 198339 253410 381710 FALSE FALSE TRUE 310623.6684 281111.7867 404393.0649 288271.8721 298584.7397 233455.1994 226686.623 149696.0493 304267.0626 286556.7219 1.083986676 0.980998753 1.411214723 1.005985378 1.0419743 0.81469106 0.791070688 0.522395874 1.061803962 1 18.12846121 -6.087240078 2.000565599 0.800737327 1.134761977 0.368642349 0.174093524 0.321957197 2.558227284 0.064671343 0.066854079 8.18E-07 6.087240078 0.33402465 FITIFGTR ddPTM_HeLa_A486_30min_R1 3 FITIFGTR 8 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 ;; ;; 198.92 1.16E-09 433173000 460788 546918 380632 168190 536556 457196 521749 461327 463153 513361 FALSE FALSE TRUE 428489.1407 503578.2258 528022.9041 391554.8199 469256.1433 400791.8059 391201.8817 356292.9128 503299.475 384812.0642 1.113502358 1.308634195 1.372157875 1.017522204 1.21944239 1.041526094 1.016605034 0.925888105 1.307909813 1 18.5537945 -5.26984167 24.87768877 1.07458927 1.26915175 0.337871158 0.121327808 625.879883 1853118.455 0.033575394 0.050733441 5.37E-06 5.26984167 0.19456248 FITLLLPGGAQTAVRPGS(ph)PSTSTMR ddPTM_HeLa_A485_30min_R1 2 FITLLLPGGAQTAVRPGSPSTSTMR 25 1 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 1 0 FITLLLPGGAQTAVRPGS(0.953)PS(0.035)T(0.008)S(0.001)T(0.001)MR;FITLLLPGGAQT(0.001)AVRPGS(0.54)PS(0.376)T(0.064)S(0.016)T(0.004)MR ; 142.22 2.81E-09 352590000 200560 220000 255580 264390 305990 176081 232760 213540 230430 358900 TRUE FALSE FALSE 245173.8801 245727.0863 350129.6776 278832.9562 275524.5612 185300.3289 183028.9245 161168.9802 276675.1874 269432.8351 0.909962886 0.91201611 1.299506341 1.034888551 1.022609442 0.687742193 0.679311876 0.598178689 1.026879991 1 18.03956615 -6.218127113 7.989894875 0.765973118 1.044171992 0.337269079 0.163040463 0.321606113 54.50760181 0.05443038 0.054155015 6.05E-07 6.218127113 0.278198874 FITLLLPGGAQTAVRPGS(ph)PSTSTMR ddPTM_HeLa_A486_30min_R1 1 FITLLLPGGAQTAVRPGSPSTSTMR 25 1 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 1 0 FITLLLPGGAQTAVRPGS(0.746)PS(0.21)T(0.036)S(0.006)T(0.002)MR 177.38 2.98E-15 163740000 95909 102800 81118 26446 104680 85181 95870 101820 86530 93446 TRUE FALSE FALSE 89186.27437 94653.75361 112529.062 61567.62451 91550.0583 74672.23428 71882.31199 78637.80871 94030.49007 70046.51337 1.273243593 1.351298574 1.606490553 0.878953449 1.306989512 1.066037847 1.02620828 1.122651292 1.342400721 1 16.09602562 -5.257387191 24.99991656 1.114650427 1.404439662 0.458573721 0.151219224 325.5688674 2008585.342 0.04053585 0.067090296 5.53E-06 5.257387191 0.289789234 FITLLLPGGAQTAVRPGSPS(ph)TSTMR ddPTM_HeLa_A486_30min_R1 1 FITLLLPGGAQTAVRPGSPSTSTMR 25 1 H0Y4W2;F2Z2U4;Q9Y4A5-2;Q9Y4A5 H0Y4W2 TRRAP Transformation/transcription domain-associated protein 1 0 FITLLLPGGAQTAVRPGS(0.216)PS(0.752)T(0.028)S(0.004)TMR 203.25 9.47E-29 216830000 197130 196820 161220 69034 199840 203900 186280 179730 168340 183040 TRUE FALSE FALSE 183312.205 181223.2664 223648.7016 160714.6408 174774.2038 178744.8911 139670.7737 138809.4025 182931.8467 137205.5926 1.336040328 1.320815449 1.630026134 1.171341763 1.273812535 1.302752225 1.01796706 1.0116891 1.333268151 1 17.06597976 -6.119160758 1.011409996 1.097849114 1.400309337 0.419656951 0.141579159 0.523645134 1.143995433 0.075655243 0.079232229 7.60E-07 6.119160758 0.302460223 FIVDETLDFGGLS(ph)PSDSR ddPTM_HeLa_A486_30min_R1 1 FIVDETLDFGGLSPSDSR 18 0 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 FIVDET(0.011)LDFGGLS(0.971)PS(0.009)DS(0.009)R 55.173 0.033399 5626400 10339 9024.2 7020.4 3288.8 6430.5 5476.5 8811.3 6534.3 6556.7 8340.1 TRUE FALSE FALSE 9614.289491 8309.089526 9738.886893 7656.492607 5623.926728 4800.865111 6606.619544 5046.582533 7125.040035 6251.684675 1.537871788 1.329096069 1.557802 1.224708699 0.899585795 0.767931423 1.056774276 0.807235616 1.139699202 1 12.6100293 -5.563548341 3.410039798 0.93312654 1.45719487 0.798779702 0.119413669 0.096521997 2.330276039 0.03472263 0.048046523 2.73E-06 5.563548341 0.524068329 FIVLNSLNQNAKPEGPEQAELGRLS(ph)PR ddPTM_HeLa_A485_30min_R1 1 FIVLNSLNQNAKPEGPEQAELGRLSPR 27 2 P41182-2;P41182 P41182-2 BCL6 B-cell lymphoma 6 protein 1 0 FIVLNSLNQNAKPEGPEQAELGRLS(1)PR 174.93 1.14E-14 448560000 169090 186810 154680 195310 200390 227490 298590 288490 159730 288550 TRUE FALSE FALSE 206703.4871 208655.8045 211902.5688 205979.2907 180438.468 239401.0246 234793.8072 217737.3752 191786.3459 216619.7954 0.954222521 0.963235166 0.978223474 0.950879352 0.832973125 1.105166886 1.083898204 1.005159177 0.885359279 1 17.72480556 -6.271713198 24.99968491 1.020487993 0.940607714 0.264481704 0.066263791 1103.016719 2684006.391 0.024564784 0.021908792 5.35E-07 6.271713198 -0.079880279 FIVLNSLNQNAKPEGPEQAELGRLS(ph)PR ddPTM_HeLa_A486_30min_R1 1 FIVLNSLNQNAKPEGPEQAELGRLSPR 27 2 P41182-2;P41182 P41182-2 BCL6 B-cell lymphoma 6 protein 1 0 FIVLNSLNQNAKPEGPEQAELGRLS(1)PR 205.96 8.11E-29 425920000 245200 262910 172400 94417 255960 229940 323230 290200 234510 383000 TRUE FALSE FALSE 228012.7462 242076.0541 239157.897 219807.5476 223855.1101 201572.3407 242354.4352 224127.795 254837.5156 287094.3071 0.794208525 0.843193502 0.833029047 0.765628374 0.779726747 0.702111939 0.844163152 0.780676556 0.887643918 1 18.1311652 -8.02289897 2.692704597 0.999860262 0.792848175 0.722343752 0.040427071 0.149745666 2.600669573 0.040492821 0.01093964 9.49E-09 8.02289897 -0.207012087 FIVS(ph)PVPESR ddPTM_HeLa_A485_30min_R1 4 FIVSPVPESR 10 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4;H0YH68 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 FIVS(1)PVPESR;FIVS(1)PVPESR;FIVS(1)PVPESR;FIVS(1)PVPESR ;;; 132.17 6.83E-05 225829000 378444 468100 423498 374094 525300 412935 441333 477750 384069 491150 TRUE FALSE FALSE 462627.5622 522840.2231 580167.5334 394529.808 472999.2876 434555.6381 347038.5992 360581.0634 461148.1254 368715.3439 1.254701139 1.418005059 1.573483564 1.070011906 1.282830496 1.178566732 0.941210082 0.977938861 1.25068873 1 18.49214793 -5.831321973 1.081970158 1.051698605 1.399917604 0.482490308 0.138898758 0.432216727 1.081281786 0.063596235 0.088902099 1.47E-06 5.831321973 0.348218998 FIVS(ph)PVPESR ddPTM_HeLa_A486_30min_R1 4 FIVSPVPESR 10 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4;H0YH68 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 FIVS(1)PVPESR;FIVS(1)PVPESR;FIVS(1)PVPESR;FIVS(1)PVPESR ;;; 165.78 4.27E-07 262369000 555928 596859 492759 195073 607235 461385 519075 516896 447163 501978 TRUE FALSE FALSE 516960.318 549561.7191 683568.4813 454139.8024 531069.9241 404464.0097 389196.9448 399210.0646 485923.4489 376279.4415 1.373873406 1.460514869 1.816651153 1.206921645 1.411371086 1.07490329 1.034329548 1.060940409 1.291389843 1 18.52144494 -5.909115894 1.496612692 1.092457506 1.520616082 0.568967565 0.158174699 0.286225826 1.32570416 0.06183699 0.074497652 1.23E-06 5.909115894 0.428158576 FIYMAVQHYIETLQR ddPTM_HeLa_A485_30min_R1 2 FIYMAVQHYIETLQR 15 0 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 0 ; ; 212.24 1.80E-22 24356000 53532.7 61359 69634 74285.9 92386 74460 98674 93612 69309.2 109902 FALSE FALSE TRUE 65440.86443 68534.4013 95394.51431 78343.95062 83187.72545 78358.61046 77591.49381 70653.51022 83218.9207 82505.454 0.793170163 0.830665101 1.156220707 0.949560869 1.00826941 0.949738553 0.940440784 0.856349572 1.00864751 1 16.33220187 -4.55148724 24.99957352 0.976630958 0.802543643 0.476213313 0.072212073 152.3617326 133141.0722 0.018544742 0.049066478 2.81E-05 4.55148724 -0.174087315 FIYMAVQHYIETLQR ddPTM_HeLa_A486_30min_R1 2 FIYMAVQHYIETLQR 15 0 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 0 0 ; ; 155.98 8.52E-08 17324100 12434.9 15566.4 15002.3 6541.9 17502.4 13658.1 17110 16239 15475.4 17487.6 FALSE FALSE TRUE 11563.27772 14332.86177 20811.59234 15229.87381 15307.08579 11973.10249 12828.89703 12541.73419 16816.82013 13108.59113 0.882114455 1.093394525 1.587629984 1.161823849 1.167714031 0.913378285 0.978663298 0.956756837 1.282885396 1 13.67822502 -6.102110972 6.27723909 1.02101339 1.199443475 0.13877321 0.187259487 0.467235948 24.32385697 0.064875182 0.065132551 7.90E-07 6.102110972 0.178430085 FKAEAPLPS(ph)PK ddPTM_HeLa_A485_30min_R1 4 FKAEAPLPSPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK ;;; 119.65 9.48E-05 28330780000 12057400 9300700 4583170 16360500 9845700 10292600 18343200 15731400 6252400 21087000 TRUE FALSE FALSE 14739527.03 10388335.96 6278675.305 17254232.69 8865427.538 10831504.62 14424025.47 11873249.48 7507199.33 15830398.98 0.931090054 0.656227046 0.396621419 1.089943009 0.560025527 0.684221834 0.911159946 0.750028442 0.474226792 1 23.91619428 -11.14216846 2.319258233 1.602742129 0.717907632 0.14800808 0.203643429 16849887.56 4203214.727 53415388.49 0.051323558 7.21E-12 11.14216846 -0.884834497 FKAEAPLPS(ph)PK ddPTM_HeLa_A486_30min_R1 5 FKAEAPLPSPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK;FKAEAPLPS(1)PK ;;;; 113.01 0.00021751 32055860000 17686870 12410510 4876978 9189496 10064979 14509740 20842100 18090730 9239342 29683710 TRUE FALSE FALSE 16447111.75 11427055.99 6765474.492 21393611.1 8802535.482 12719675.8 15627186.13 13971865.7 10040215.6 22250715.81 0.739172254 0.513559028 0.304056487 0.961479679 0.395606845 0.571652432 0.70232285 0.627928819 0.451231128 1 24.40734841 -10.85433468 2.661519936 1.170034376 0.584636314 0.326703551 0.178631277 37383323.63 25146294.81 40398752.13 0.043841672 1.40E-11 10.85433468 -0.585398062 FKASLEQLLQVLHSTTPHYIR ddPTM_HeLa_A485_30min_R1 1 FKASLEQLLQVLHSTTPHYIR 21 1 Q96H55-3;Q96H55 Q96H55-3 MYO19 Unconventional myosin-XIX 0 0 124.35 8.39E-09 2555800 4365.9 8231.9 5007.5 3726.8 6794 5158.8 7785.6 13679 3436.7 4369.2 FALSE FALSE TRUE 5337.079393 9194.549097 6859.982629 3930.385647 6117.565505 5428.906791 6122.142957 10324.2038 4126.414167 3280.038849 1.627139079 2.803182986 2.091433347 1.198274114 1.865089344 1.655134906 1.866484892 3.14758583 1.258038199 1 11.67949719 -2.33594302 8.454239794 1.921240347 2.056778629 0 0.654627491 0 0 0.145716516 0 0.004613781 2.33594302 0.135538282 FKEANNFLWPFK ddPTM_HeLa_A485_30min_R1 2 FKEANNFLWPFK 12 1 A8MUD9;P18124 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 133.32 0.00032275 45958000 144740 210598 137511 121855 220834 207920 278130 316280 138768 196392 FALSE FALSE TRUE 176936.9137 235225.6041 188382.0412 128511.6301 198846.9916 218806.3697 218705.2534 238711.8341 166617.4647 147435.0887 1.200100432 1.595451979 1.277728679 0.871648881 1.348708732 1.484086126 1.48340029 1.619097843 1.130107264 1 17.16972039 -5.985550001 24.99206252 1.393631622 1.245520573 0.026277161 0.235965839 676.2673939 1169634.666 0.074434624 0.08436808 1.03E-06 5.985550001 -0.148111049 FKEANNFLWPFK ddPTM_HeLa_A486_30min_R1 2 FKEANNFLWPFK 12 1 A8MUD9;P18124 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 158.42 4.89E-06 37671000 190381 165995 96599 68726 184522 151582 211581 210334 147145 257506 FALSE FALSE TRUE 177036.275 152840.9517 134004.7198 159997.6012 161377.5302 132881.354 158641.1959 162445.5398 159899.6471 193024.8215 0.917168443 0.791820194 0.694235688 0.828896512 0.836045483 0.688415889 0.821869409 0.8415785 0.828389043 1 17.55842685 -8.498316966 0.932992488 1.000407932 0.792951853 0.460738686 0.064190463 1.57947366 2.098191917 0.064530073 0.020737757 3.17E-09 8.498316966 -0.207456079 FKFFFR ddPTM_HeLa_A485_30min_R1 1 FKFFFR 6 1 Q9H0U9 Q9H0U9 TSPYL1 Testis-specific Y-encoded-like protein 1 0 0 79.027 0.031678 13416000 11754 14954 10607 6705.9 15752 14414 17087 22718 8650.2 10094 FALSE FALSE TRUE 14368.63675 16702.74022 14530.97069 7072.226337 14183.67557 15168.69475 13436.22286 17146.37488 10386.2158 7577.751566 1.896160969 2.204181553 1.917583411 0.933288229 1.871752518 2.001740836 1.773114722 2.262725919 1.370619729 1 12.88755413 -7.986644324 7.892837589 1.000116896 1.842037409 0.402168692 0.342619661 0.130510638 47.86037071 0.345783365 0.089440858 1.03E-08 7.986644324 0.841920513 FKGPGDTSNFDDYEEEEIRVS(ph)INEK ddPTM_HeLa_A486_30min_R1 1 FKGPGDTSNFDDYEEEEIRVSINEK 25 2 K7ERP6;P17612-2;P17612 K7ERP6 PRKACA cAMP-dependent protein kinase catalytic subunit alpha 1 0 FKGPGDTSNFDDYEEEEIRVS(1)INEK 204.24 8.01E-29 254170000 174000 101030 51665 102450 91570 131420 162300 151670 95470 206210 TRUE FALSE FALSE 161803.4985 93024.01486 71671.07164 238508.7775 80084.43674 115206.7366 121690.8234 117138.0519 103745.4165 154573.6738 1.046772678 0.601810208 0.463669329 1.543010344 0.518098812 0.745319263 0.787267459 0.757813728 0.671171319 1 17.2379351 FKGQILMPNIGYGSNKK ddPTM_HeLa_A485_30min_R1 2 FKGQILMPNIGYGSNKK 17 2 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 0 ; ; 79.805 0.0043165 64483000 62754 62109 42613 57799 77806 69026 104013 114203 55966 86262 FALSE FALSE TRUE 76713.4108 69372.10727 58377.32197 60956.41302 70059.36145 72640.09463 81789.77284 86194.53519 67197.86285 64758.47093 1.184608125 1.07124375 0.901462328 0.94128864 1.081856326 1.121707996 1.262997283 1.331015602 1.037669078 1 15.9827813 -6.263942113 2.668613109 1.184037547 1.020405079 0.18416859 0.116645323 0.384428707 5.449233069 0.045043557 0.041679542 5.45E-07 6.263942113 -0.163632468 FKIDSNIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 FKIDSNISPK 10 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 FKIDS(0.014)NIS(0.986)PK;FKIDS(0.011)NIS(0.989)PK ; 70.598 0.0066113 4481600000 4386900 3415900 1850740 7280700 4600100 4311700 8035100 7354600 3098100 9330800 TRUE FALSE FALSE 5362750.77 3815359.791 2535405.742 7678426.205 4142097.892 4537453.945 6318335.244 5550872.818 3719860.253 7004803.281 0.765581924 0.54467765 0.361952455 1.096165859 0.591322515 0.647763222 0.902000383 0.792438074 0.531044214 1 22.7399131 -14 0.132438624 1.955006486 0.5801565 0.164746832 0.199531903 265.1806148 2.197225334 68.16472871 1.451784567 1.00E-14 14 -1.374849987 FKIDSNIS(ph)PK ddPTM_HeLa_A486_30min_R1 2 FKIDSNISPK 10 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 FKIDS(0.013)NIS(0.987)PK;FKIDS(0.001)NIS(0.999)PK ; 100.11 0.00081734 5236200000 7905900 5589100 2368600 5350600 4505800 7632100 11294100 9746700 4773200 15553100 TRUE FALSE FALSE 7351737.236 5146199.361 3285785.353 12456467.2 3940640.549 6690529.1 8468196.723 7527589.179 5186944.819 11658502.53 0.630590183 0.441411695 0.281835969 1.068444869 0.338005721 0.573875511 0.726353724 0.645673761 0.444906609 1 23.47487916 -14 0.325626624 5.148039928 0.557763754 0.261215237 0.213311522 477.3785528 4.186092188 1368.482203 0.18265259 1.00E-14 14 -4.590276174 FKIPGS(ph)PPESMGR ddPTM_HeLa_A485_30min_R1 4 FKIPGSPPESMGR 13 1 P50395-2;P50395;Q5SX87;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 1 0 FKIPGS(0.999)PPES(0.001)MGR;FKIPGS(0.969)PPES(0.031)MGR;FKIPGS(1)PPESMGR;FKIPGS(0.958)PPES(0.042)MGR ;;; 125.41 1.47E-05 2634850000 1467855 1766250 1317975 1570357 2026940 1884350 2532270 2960710 1456312 2213950 TRUE FALSE FALSE 1794374.281 1972797.573 1805548.798 1656141.627 1825130.737 1983011.652 1991229.828 2234591.23 1748580.46 1662053.01 1.079613147 1.186964292 1.086336469 0.996443325 1.098118246 1.193109751 1.198054344 1.34447651 1.052060584 1 20.66453497 -6.231254228 7.096341458 1.181626925 1.089285948 0.083767626 0.097480806 0.393801531 73.13284781 0.032060079 0.031540515 5.87E-07 6.231254228 -0.092340978 FKIPGS(ph)PPESMGR ddPTM_HeLa_A486_30min_R1 3 FKIPGSPPESMGR 13 1 P50395-2;P50395;Q5SX87;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 1 0 FKIPGS(0.983)PPES(0.017)MGR;FKIPGS(1)PPESMGR;FKIPGS(1)PPESMGR ;; 178.51 2.49E-17 2489770000 690700 566370 333935 216194 601470 572730 710490 708210 465150 745190 TRUE FALSE FALSE 642285.4968 521488.7785 463243.5751 503310.5578 526028.0241 502072.3957 532717.8872 546966.0431 505469.5765 558589.5736 1.149834381 0.933581297 0.829309384 0.901038225 0.941707559 0.898821638 0.953683907 0.979191286 0.90490335 1 19.09142912 -9.73828729 14.03390649 1.000000389 0.938633717 0.040581443 0.079120219 0 0 0.077212412 0.018726761 1.83E-10 9.73828729 -0.061366672 FKIPSLGWS(ph)PSK ddPTM_HeLa_A485_30min_R1 1 FKIPSLGWSPSK 12 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKIPSLGWS(0.963)PS(0.037)K 224.07 2.00E-23 6564800000 1908500 1628700 853400 2433900 1844400 2040500 3525700 3204900 1538100 3470100 TRUE FALSE FALSE 2333039.241 1819162.297 1169108.173 2566857.794 1660765.06 2147337.425 2772405.393 2418893.25 1846782.562 2605067.932 0.895577122 0.698316644 0.448782221 0.985332383 0.637513149 0.824292295 1.064235354 0.928533655 0.708919157 1 21.31288956 -6.523592149 24.94189763 0.923009003 0.729540054 0.245074772 0.159061094 35.44772364 1239206.849 0.059992242 0.046895816 3.00E-07 6.523592149 -0.193468949 FKIPSLGWS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 FKIPSLGWSPSK 12 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKIPSLGWS(0.901)PS(0.099)K;FKIPS(0.001)LGWS(0.871)PS(0.128)K ; 153.48 4.15E-08 6805170000 2876510 2185220 958955 1227292 2091040 2880420 3666170 3521110 1793010 4807960 TRUE FALSE FALSE 2674881.503 2012055.209 1330288.058 2857197.8 1828762.265 2525063.066 2748855.489 2719430.118 1948429.55 3604015.521 0.742194779 0.558281505 0.369112744 0.792781769 0.507423526 0.700624914 0.762720214 0.754555607 0.540627403 1 21.78117379 -14 0.17714221 2.469280947 0.557856827 0.406465591 0.131642251 131.0233845 1.254106871 67.6385373 0.426145802 1.00E-14 14 -1.911424119 FKLGLDFPNLPYLIDGAHK ddPTM_HeLa_A485_30min_R1 1 FKLGLDFPNLPYLIDGAHK 19 1 H3BRM6;B9ZVX7;A0A3B3IRM5;Q5T8R1;A0A0A0MR85;P09488-2;Q03013-2;Q03013;P46439;P09488 H3BRM6 GSTM1;GSTM5;GSTM4 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 5 0 0 96.505 0.00033596 6250900 8422.2 8922.9 6759.7 8895.8 12551 11646 16386 18729 7811.3 15752 FALSE FALSE TRUE 10295.68933 9966.355536 9260.394325 9381.755029 11301.37837 12255.76655 12884.99724 14135.68338 9378.956261 11825.31629 0.870648114 0.842798221 0.783099081 0.793361868 0.955693538 1.036400739 1.089611214 1.195374655 0.793125192 1 13.52959115 -5.950482373 3.270038644 1.037653132 0.821343278 0.482158803 0.097222392 0.200394443 4.405267555 0.031865038 0.035681357 1.12E-06 5.950482373 -0.216309854 FKLGLDFPNLPYLIDGAHK ddPTM_HeLa_A486_30min_R1 1 FKLGLDFPNLPYLIDGAHK 19 1 H3BRM6;B9ZVX7;A0A3B3IRM5;Q5T8R1;A0A0A0MR85;P09488-2;Q03013-2;Q03013;P46439;P09488 H3BRM6 GSTM1;GSTM5;GSTM4 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 5 0 0 111.18 3.27E-05 8762700 16409 15487 8807 9459.3 15114 16242 20773 19602 13940 23119 FALSE FALSE TRUE 15258.81384 14259.75372 12217.30626 22021.72845 13218.26119 14238.22718 15575.37569 15139.05251 15148.33042 17329.85192 0.880493031 0.822843368 0.704986189 1.270739562 0.76274519 0.821601202 0.898759883 0.873582335 0.874117707 1 14.08097171 -11.06432113 2.104924752 1.165313918 0.878966555 0.060749811 0.142881023 17799147.82 5254606.686 14132613.28 0.036174355 8.62E-12 11.06432113 -0.286347363 FKMPDVHFKS(ph)PQISMSDIDLNLKGPK ddPTM_HeLa_A485_30min_R1 1 FKMPDVHFKSPQISMSDIDLNLKGPK 26 3 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKMPDVHFKS(0.89)PQIS(0.099)MS(0.012)DIDLNLKGPK 76.421 0.0035294 65892000 87810 54257 24882 76411 88251 106070 169380 238680 56970 142700 TRUE FALSE FALSE 107343.0316 60601.88418 34086.88723 80585.13945 79464.42057 111623.6612 133190.5793 180143.3558 68403.35644 107127.5162 1.002011765 0.565698584 0.31818984 0.752235675 0.741774134 1.041970029 1.24329009 1.681578759 0.638522752 1 16.70896957 -6.271553471 2.16959189 1.195000173 0.633181409 0.369287504 0.290145853 0.308028033 2.848307115 0.113836228 0.104100487 5.35E-07 6.271553471 -0.561818764 FKMPEMHFK ddPTM_HeLa_A485_30min_R1 3 FKMPEMHFK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;; ;; 87.328 0.015702 99766700 362799 410224 266079 352323 408316 488619 596509 720080 339885 505162 FALSE FALSE TRUE 443502.3859 458196.1283 364512.6946 371569.5134 367662.6254 514202.3353 469059.9791 543479.251 408096.8019 379234.4102 1.16946768 1.208213485 0.961180433 0.979788498 0.969486459 1.355895777 1.236860281 1.433095828 1.076106996 1 18.53273035 -6.257701335 24.98114086 1.248489547 1.056310672 0.241551208 0.139834352 409.869044 2739137.266 0.047035953 0.045311507 5.52E-07 6.257701335 -0.192178875 FKMPEMHFK ddPTM_HeLa_A486_30min_R1 2 FKMPEMHFK 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 87.328 0.015702 135201600 392810 315498 184853 153068 454877 347870 402959 411360 260868 458100 FALSE FALSE TRUE 365276.0475 290496.7895 256433.0321 356350.0396 397822.0851 304953.3363 302134.3961 317702.3079 283480.2483 343388.7783 1.063739035 0.845970538 0.74677173 1.037745151 1.158518013 0.888070186 0.879861007 0.925197118 0.82553731 1 18.38948337 -9.940744455 10.50598168 0.999989874 0.929304824 0.030883051 0.11728727 0 0 0.119605885 0.029008688 1.15E-10 9.940744455 -0.07068505 FKMPEMHFKT(ph)PK ddPTM_HeLa_A486_30min_R1 2 FKMPEMHFKTPK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKMPEMHFKT(1)PK;FKMPEMHFKT(1)PK ; 99.055 0.00078693 248310000 794760 479730 225807 477860 514760 758210 1175620 945810 407504 1410380 TRUE FALSE FALSE 739051.4281 441714.4477 313245.5177 1112482.23 450194.0009 664669.7591 881467.4416 730469.7099 442826.7748 1057211.668 0.6990572 0.417810795 0.296294041 1.052279561 0.425831472 0.628700741 0.833766282 0.690939887 0.418862928 1 20.01183282 -14 0.205491902 2.754023853 0.55386933 0.213786081 0.218131849 229.4621292 2.280760903 166.5924321 0.492252665 1.00E-14 14 -2.200154523 FKMPEMHFR ddPTM_HeLa_A485_30min_R1 1 FKMPEMHFR 9 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 75.682 0.029436 2415200 4457.4 4608.1 4085.9 3989.8 5510.9 4708.2 6880.2 7608.7 3782.6 5303.5 FALSE FALSE TRUE 5448.933252 5146.97721 5597.444438 4207.752671 4962.215446 4954.714072 5410.189064 5742.654395 4541.733124 3981.435054 1.368585241 1.292744234 1.40588616 1.056843227 1.246338413 1.244454325 1.358854029 1.442357923 1.140727668 1 11.95907281 -7.995765845 9.458023509 1.000005517 1.295000323 0.475585246 0.102543487 0.087735712 108.9969767 0.1026957 0.026535699 1.01E-08 7.995765845 0.294994807 FKMPFLSIS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKMPFLS(0.001)IS(0.5)S(0.5)PK 150.39 6.14E-08 1266500000 470990 383220 197340 529380 518400 461140 763380 762590 278340 766880 TRUE FALSE FALSE 575760.1006 428034.2454 270344.278 558298.6889 466786.2758 485284.5773 600277.6268 575563.6068 334200.2849 575710.9294 1.00008541 0.743488135 0.469583369 0.969755237 0.810799747 0.842930979 1.042671932 0.999744103 0.580500157 1 19.13498508 FKMPFLSISS(ph)PK ddPTM_HeLa_A485_30min_R1 1 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKMPFLSIS(0.018)S(0.982)PK 164.41 1.21E-10 1827900000 1122100 868310 537750 1281700 1200400 1114500 1835500 1880000 717980 1843400 TRUE FALSE FALSE 1371707.274 969851.3012 736686.1026 1351716.026 1080883.961 1172853.497 1443330.43 1418927.052 862072.0003 1383874.305 0.991207994 0.700823259 0.532335993 0.976762138 0.781056457 0.847514469 1.04296353 1.02532943 0.622940969 1 20.40028148 -5.793962812 1.467373002 0.912842682 0.75608168 0.100721471 0.165863357 0.853702852 3.830300669 0.063910107 0.085537403 1.61E-06 5.793962812 -0.156761002 FKMPFLSISS(ph)PK ddPTM_HeLa_A486_30min_R1 2 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKMPFLSIS(0.015)S(0.984)PK;FKMPFLSIS(0.002)S(0.998)PK ; 146.27 8.78E-08 3525800000 1251500 868930 360800 757020 835790 1022860 1606450 1338700 595550 1969590 TRUE FALSE FALSE 1163776.313 800072.8222 500511.4226 1762380.818 730957.4248 896669.9329 1204499.219 1033907.234 647172.7535 1476391.844 0.788257072 0.541910893 0.33900988 1.193708042 0.495097171 0.60733872 0.815839794 0.700293244 0.438347554 1 20.49364424 -10.04047504 4.15311749 1.000033595 0.660370731 0.167591012 0.228756553 299700633.1 577205601.7 145506.4691 0.055598576 9.11E-11 10.04047504 -0.339662863 FKMPFLSISSPK ddPTM_HeLa_A485_30min_R1 2 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 167.44 2.20E-06 41262000 64742 74347 44251 58179 78620 82396 108900 125684 55170 92386 FALSE FALSE TRUE 79143.63454 83041.23492 60621.28634 61357.17145 70792.31675 86710.12715 85632.62537 94859.80194 66242.11295 69355.87044 1.141123802 1.197320925 0.874061359 0.884671637 1.020711243 1.250220444 1.234684603 1.367725635 0.95510463 1 16.08173038 -6.246369703 22.78606438 1.189101002 1.017206661 0.169156737 0.146321122 383.8722375 580431.8344 0.049860772 0.049613246 5.67E-07 6.246369703 -0.17189434 FKMPFLSISSPK ddPTM_HeLa_A486_30min_R1 2 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 156.8 5.37E-06 35882000 145868 101625 62325 42737 109127 106800 139308 133657 89356 165212 FALSE FALSE TRUE 135643.4065 93571.86489 86458.90912 99493.89581 95439.27409 93624.10186 104451.665 103226.2188 97101.45003 123841.8399 1.095295472 0.755575539 0.698139734 0.803394846 0.770654524 0.755997343 0.843427916 0.833532665 0.784076287 1 16.91813928 -9.863952072 5.936817209 1.000000035 0.808264869 0.224792405 0.101941364 4.57E-08 8.74E-09 0.096746941 0.023464576 1.37E-10 9.863952072 -0.191735166 FKMPS(ph)FGASAPGK ddPTM_HeLa_A485_30min_R1 2 FKMPSFGASAPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(0.999)FGAS(0.001)APGK;FKMPS(1)FGASAPGK ; 137.14 3.98E-06 608240000 481100 402940 235786 671050 550640 560360 1084290 1173330 537930 1196420 TRUE FALSE FALSE 588119.0352 450060.3279 323013.0533 707707.7623 495816.3482 589699.5831 852622.5837 885568.9778 645887.6168 898174.5125 0.654793726 0.501083388 0.359632843 0.787940152 0.55202674 0.656553459 0.949283877 0.985965384 0.719111495 1 19.77663626 -6.650292472 3.99380351 0.912483206 0.570211538 0.626542092 0.125314282 0.15184214 4.462160123 0.050983994 0.038288798 2.24E-07 6.650292472 -0.342271668 FKMPS(ph)FGASAPGK ddPTM_HeLa_A486_30min_R1 3 FKMPSFGASAPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(1)FGASAPGK;FKMPS(1)FGASAPGK;FKMPS(0.998)FGAS(0.002)APGK ;; 146.76 4.03E-08 937680000 1004820 858110 325937 509360 730160 1522710 1998600 2123380 826450 2027670 TRUE FALSE FALSE 934387.3069 790110.2384 452148.5353 1185815.822 638576.5243 1334853.522 1498529.141 1639932.727 898087.3514 1519928.234 0.614757517 0.519833911 0.297480187 0.780178824 0.420135971 0.878234572 0.985920985 1.078954052 0.59087484 1 20.53557178 -6.325969358 6.216948638 0.919895947 0.527843307 0.562087708 0.167772172 0.171584647 13.03191508 0.057869826 0.051097303 4.72E-07 6.325969358 -0.392052641 FKMPS(ph)FGMLSPGK ddPTM_HeLa_A485_30min_R1 2 FKMPSFGMLSPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(1)FGMLSPGK;FKMPS(1)FGMLSPGK ; 103.13 0.00026863 109886000 239076 195786 110738 269577 214184 206324 369900 391710 170005 351620 TRUE FALSE FALSE 292257.6314 218681.4696 151704.5944 284303.3089 192859.0889 217126.8056 290867.8432 295642.5083 204123.4441 263967.6051 1.107172341 0.828440556 0.574709137 1.077038634 0.730616504 0.822550955 1.101907346 1.119995418 0.773289753 1 18.01000136 -6.74568208 24.98800876 1.008797756 0.846926756 0.142360173 0.169062544 425.8495166 675314.6229 0.06419088 0.049551339 1.80E-07 6.74568208 -0.161871 FKMPS(ph)FGMLSPGK ddPTM_HeLa_A486_30min_R1 2 FKMPSFGMLSPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(1)FGMLSPGK;FKMPS(1)FGMLSPGK ; 118.24 6.78E-05 107307000 333570 268030 127574 175266 250170 383420 498130 531000 248170 495470 TRUE FALSE FALSE 310188.4656 246790.3267 176974.0694 408028.1055 218791.3459 336117.5387 373492.6053 410102.8916 269681.5754 371401.087 0.835184593 0.664484664 0.476503908 1.098618501 0.589097215 0.904998802 1.005631427 1.104204877 0.72611951 1 18.50261851 -6.460558627 7.07977974 0.966185757 0.735385614 0.272762696 0.177416231 0.346544254 33.92133233 0.061862479 0.054092286 3.46E-07 6.460558627 -0.230800143 FKMPS(ph)FGVSAPGK ddPTM_HeLa_A485_30min_R1 1 FKMPSFGVSAPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(0.998)FGVS(0.002)APGK 123.14 1.68E-05 369310000 648490 496750 304550 861700 723840 700480 1310400 1496300 719670 1638000 TRUE FALSE FALSE 792744.3632 554840.5913 417215.7184 908772.4891 651771.948 737156.0497 1030422.335 1129330.079 864101.1678 1229676.745 0.644677039 0.451208493 0.339288939 0.739033647 0.530035191 0.599471408 0.83796196 0.918395898 0.702705952 1 20.22984768 -6.718344352 3.312045991 0.863776963 0.537344221 0.621063781 0.121051204 0.167365714 3.762827798 0.052025278 0.037029009 1.91E-07 6.718344352 -0.326432742 FKMPS(ph)FGVSAPGK ddPTM_HeLa_A486_30min_R1 1 FKMPSFGVSAPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(0.999)FGVS(0.001)APGK 123.14 5.93E-05 0 708520 743930 213560 378580 562440 1232100 1694000 1851000 561510 1362100 TRUE FALSE FALSE 658856.4068 684978.2775 296256.1513 881353.3724 491893.5307 1080096.029 1270143.283 1429567.707 610182.1389 1021021.294 0.645291543 0.670875604 0.290156682 0.863207631 0.481766182 1.057858475 1.243992941 1.400135056 0.597619406 1 19.96158152 -6.29685882 8.029836287 1.09757367 0.593295442 0.492998614 0.23661405 0.237985445 49.12349255 0.081137162 0.07213966 5.05E-07 6.29685882 -0.504278228 FKMPS(ph)FGVSAPGR ddPTM_HeLa_A485_30min_R1 1 FKMPSFGVSAPGR 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(1)FGVSAPGR 101.53 0.00033188 136720000 284660 284440 242780 364290 399660 358830 533560 570610 373090 615490 TRUE FALSE FALSE 347981.6349 317702.7837 332594.4249 384190.2403 359868.4471 377617.7839 419560.5472 430667.0028 447965.7408 462059.6703 0.753109733 0.687579558 0.719808385 0.831473217 0.778835441 0.817248958 0.908022436 0.932059278 0.969497599 1 18.81771965 -6.660212081 0.557853489 1.007304182 0.709927333 0.913028886 0.030223516 0.238692481 0.155865206 0.028773714 0.024672996 2.19E-07 6.660212081 -0.29737685 FKMPS(ph)FR ddPTM_HeLa_A485_30min_R1 1 FKMPSFR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(1)FR 96.89 0.002551 146710000 402820 352330 226400 355980 301420 308600 405320 463380 195460 509070 TRUE FALSE FALSE 492425.9193 393531.9286 310154.7813 375426.286 271409.5665 324757.8188 318720.0708 349735.3284 234687.0291 382168.2177 1.28850568 1.02973484 0.81156613 0.982358733 0.71018351 0.84977715 0.833978484 0.91513452 0.614093528 1 18.54384828 -4.271074914 1.521811099 0.831891668 1.46881391 0.612167562 0.110902258 0.677950391 1.485119852 0.029419899 0.646571353 5.36E-05 4.271074914 0.636922243 FKMPS(ph)FR ddPTM_HeLa_A486_30min_R1 2 FKMPSFR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPS(1)FR;FKMPS(1)FR ; 107.15 0.0015969 270740000 954350 830420 403710 395360 652150 757690 890480 1130350 677640 1140170 TRUE FALSE FALSE 887454.9933 764614.4949 560037.3237 920418.0604 570351.2659 664213.9114 667672.4855 872993.9804 736378.3808 854664.0107 1.038367103 0.894637525 0.655271916 1.076935555 0.667339748 0.777163778 0.781210484 1.021446989 0.861599847 1 19.70499785 -7.258466501 24.93547731 0.956142563 0.836312571 0.13826483 0.136057372 514.5285431 4315728.807 0.066326787 0.036141366 5.51E-08 7.258466501 -0.119829992 FKMPSFGMLS(ph)PGK ddPTM_HeLa_A485_30min_R1 2 FKMPSFGMLSPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPSFGMLS(1)PGK;FKMPSFGMLS(1)PGK ; 99.891 0.0003968 1018250000 1159910 1033180 513040 1307510 1071520 1140100 1804940 1810010 756980 1782650 TRUE FALSE FALSE 1417927.978 1154001.414 702834.8454 1378935.961 964835.7065 1199793.873 1419299.824 1366102.21 908898.9426 1338268.162 1.059524554 0.862309548 0.52518237 1.030388378 0.720958425 0.896527248 1.060549645 1.020798557 0.679160551 1 20.3519358 -6.518411665 24.40464996 0.947100124 0.831522784 0.070284204 0.170716533 373.8004364 2042185.94 0.063739713 0.050695914 3.03E-07 6.518411665 -0.11557734 FKMPSFGMLS(ph)PGK ddPTM_HeLa_A486_30min_R1 2 FKMPSFGMLSPGK 13 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FKMPSFGMLS(1)PGK;FKMPSFGMLS(1)PGK ; 135.09 5.86E-06 1137970000 2616900 1983520 885400 1248380 1787510 2221100 3151800 2746800 1464910 3921300 TRUE FALSE FALSE 2433468.824 1826338.651 1228250.592 2906291.73 1563303.828 1947083.264 2363186.304 2121413.602 1591889.578 2939380.957 0.827884803 0.62133445 0.417860294 0.988742791 0.531847981 0.662412696 0.803974149 0.721721217 0.541573073 1 21.48708092 -10.9410017 2.394426318 1.231492565 0.679410232 0.271387384 0.157442535 33775512.92 15764509 43611893.61 0.037617659 1.15E-11 10.9410017 -0.552082332 FKNEDLT(ph)DELSLNK ddPTM_HeLa_A485_30min_R1 1 FKNEDLTDELSLNK 14 1 P33981-2;P33981;D6RFY1;D6RF82;D6REX1;D6RIC6 P33981-2 TTK Dual specificity protein kinase TTK 1 0 FKNEDLT(1)DELSLNK 110.74 0.000315 81578000 148720 97962 68805 200400 154490 135270 211930 196910 110940 283780 TRUE FALSE FALSE 181802.2509 109417.8037 94258.83271 211347.3446 139108.4332 142352.528 166649.4242 148617.5138 133204.6404 213038.8686 0.853375969 0.513604886 0.442448992 0.992060022 0.65297208 0.668199794 0.782248917 0.697607506 0.6252598 1 17.70075715 -11.06359973 2.423861655 1.443372307 0.689190473 0.274973141 0.149989578 23818450.54 6730452.111 58498556.71 0.03882073 8.64E-12 11.06359973 -0.754181834 FKNEDLT(ph)DELSLNK ddPTM_HeLa_A486_30min_R1 1 FKNEDLTDELSLNK 14 1 P33981-2;P33981;D6RFY1;D6RF82;D6REX1;D6RIC6 P33981-2 TTK Dual specificity protein kinase TTK 1 0 FKNEDLT(1)DELSLNK 137.43 8.60E-06 148520000 251760 239800 108440 150740 247590 316290 386460 330330 177190 393970 TRUE FALSE FALSE 234112.9241 220797.3747 150430.8721 350930.338 216534.9535 277269.3556 289763.6204 255121.0701 192548.9719 295317.3477 0.792750327 0.747661376 0.509387184 1.188316029 0.733228018 0.938886109 0.981194037 0.863887855 0.65200698 1 18.17190658 -5.24157553 24.99993292 0.899573079 0.68970584 0.307022282 0.154399012 1082.731409 1362685.357 0.040893539 0.070705302 5.73E-06 5.24157553 -0.209867239 FKPGYLEATLNWFR ddPTM_HeLa_A486_30min_R1 1 FKPGYLEATLNWFR 14 1 Q9H2U2-4;Q9H2U2-6;Q9H2U2-3;Q9H2U2;Q9H2U2-2;D6R967;H0Y9D8 Q9H2U2-4 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 0 0 152.89 1.94E-06 18030000 6312.2 8888.9 7471.4 3634.4 9672 8115.4 11257 9940.8 10525 11730 FALSE FALSE TRUE 5869.747376 8184.511191 10364.52617 8461.066872 8458.847572 7114.204459 8440.379536 7677.496846 11437.31547 8792.731651 0.667568124 0.930826905 1.178760661 0.962279666 0.962027264 0.809100601 0.959926889 0.873164012 1.300769309 1 13.10209572 -7.745453453 24.99985085 1.150384744 0.927796127 0.303689173 0.140145905 265.9908462 415977.9807 0.095957967 0.036011714 1.80E-08 7.745453453 -0.222588617 FKQFS(ph)CLS(ph)LLS(ph)SWDYREK ddPTM_HeLa_A485_30min_R1 1 FKQFSCLSLLSSWDYREK 18 2 F2Z3H6 F2Z3H6 BCL7B 3 0 FKQFS(0.999)CLS(0.988)LLS(0.457)S(0.421)WDY(0.134)REK 40.012 0.011291 0 25427 62199 75257 24425 54970 48478 37174 51087 48408 36182 TRUE FALSE FALSE 31083.14843 69472.63199 103097.696 25759.2759 49496.99379 51016.23312 29231.47122 38557.83315 58123.04158 27162.49328 1.144340768 2.55766771 3.795590299 0.94833989 1.822255169 1.878186682 1.076170398 1.419524811 2.139827187 1 14.72932829 -5.294054253 24.99855711 1.502043762 2.505047711 0.311065412 0.701241371 780.5182011 598247.7867 0.198584347 0.294572978 5.08E-06 5.294054253 1.003003949 FKRPQFS(ph)PTGDCQAEAAAAANGTGGEEDDGPAAELLEK ddPTM_HeLa_A485_30min_R1 2 FKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEK 38 2 Q7Z4Q2 Q7Z4Q2 HEATR3 HEAT repeat-containing protein 3 1 0 FKRPQFS(0.824)PT(0.176)GDCQAEAAAAANGTGGEEDDGPAAELLEK;FKRPQFS(0.5)PT(0.5)GDCQAEAAAAANGTGGEEDDGPAAELLEK ; 167.51 5.12E-15 362870000 82683 73235 81809 80499 106596 84311 129364 131559 68323 119696 TRUE FALSE FALSE 101075.5481 81799.19619 112073.5535 84896.45654 95982.92796 88725.39359 101724.3246 99293.94897 82034.7994 89857.99004 1.124836512 0.910316335 1.247229694 0.944784726 1.068162418 0.987395707 1.132056532 1.105009682 0.912938286 1 16.45535917 -7.761384809 25 0.956469133 1.061644009 0.17055954 0.095485701 2.46151768 1132191.131 0.069987856 0.022551534 1.73E-08 7.761384809 0.105174876 FKRPQFS(ph)PTGDCQAEAAAAANGTGGEEDDGPAAELLEK ddPTM_HeLa_A486_30min_R1 2 FKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEK 38 2 Q7Z4Q2 Q7Z4Q2 HEATR3 HEAT repeat-containing protein 3 1 0 FKRPQFS(0.825)PT(0.175)GDCQAEAAAAANGTGGEEDDGPAAELLEK;FKRPQFS(0.951)PT(0.049)GDCQAEAAAAANGTGGEEDDGPAAELLEK ; 289.35 2.62E-81 532970000 200166 185950 109625 65957 197445 181769 234877 226596 136904 253747 TRUE FALSE FALSE 186135.3971 171214.6448 152074.7359 153551.2293 172679.607 159344.1889 176108.2903 175005.0374 148770.9489 190207.0996 0.97859332 0.900148549 0.79952187 0.807284426 0.907850482 0.83774049 0.925876535 0.920076263 0.78215245 1 17.53721157 -6.767290169 24.98809292 0.900365993 0.868555579 0.052634997 0.070043237 564.2081942 2409639.001 0.02914049 0.020246709 1.71E-07 6.767290169 -0.031810413 FKYDDAERR ddPTM_HeLa_A485_30min_R1 1 FKYDDAERR 9 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7;E9PK06;E9PN91;E9PJD0;E9PK72;E9PKK3;E9PNW6 P29692-2 EEF1D Elongation factor 1-delta 0 0 118.4 0.00044037 197710000 304910 409680 271110 271920 409420 454870 560140 698200 326090 365110 FALSE FALSE TRUE 372736.1776 457588.5123 371404.8708 286774.3011 368656.7072 478686.2898 440461.5131 526965.3553 391533.2719 274094.7964 1.359880532 1.669453482 1.355023429 1.04625956 1.344997104 1.74642604 1.606967804 1.922566069 1.42845934 1 18.06431541 -6.239058336 23.40222552 1.602674471 1.355420982 0.086336469 0.266628382 657.3203701 687311.1133 0.087032658 0.086945315 5.77E-07 6.239058336 -0.24725349 FKYDDAERR ddPTM_HeLa_A486_30min_R1 1 FKYDDAERR 9 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7;E9PK06;E9PN91;E9PJD0;E9PK72;E9PKK3;E9PNW6 P29692-2 EEF1D Elongation factor 1-delta 0 0 96.342 0.0020664 160050000 232580 181270 125870 77748 217900 188120 236530 236200 141720 243140 FALSE FALSE TRUE 216277.343 166905.505 174610.2349 181001.2732 190568.9502 164911.6671 177347.6922 182422.4162 154004.4037 182256.1614 1.186666839 0.91577428 0.958048461 0.9931147 1.045610468 0.904834524 0.973068295 1.000912204 0.844988737 1 17.47560806 -4.254067745 24.60787742 0.962020113 1.186666973 0.60587751 0.054911147 482.9363759 1612081.722 0.013293621 0.132912763 5.57E-05 4.254067745 0.224646859 FLAAVAHSPLAAQLKPMT(ph)PFKR ddPTM_HeLa_A485_30min_R1 1 FLAAVAHSPLAAQLKPMTPFKR 22 2 Q5JR04;Q9HCE1;Q9HCE1-2 Q5JR04 MOV10 Putative helicase MOV-10 1 0 FLAAVAHSPLAAQLKPMT(1)PFKR 123.32 1.97E-06 92517000 77047 55161 35918 108070 83783 75409 121110 117710 50235 148840 TRUE FALSE FALSE 94185.83934 61611.59911 49205.56287 113973.5905 75441.27034 79357.29864 95233.85912 88841.43794 60316.70372 111736.9272 0.84292491 0.551398724 0.440369752 1.020017225 0.67516865 0.710215509 0.852304261 0.795094694 0.539809938 1 16.76974653 -11.58375476 2.230487447 6.703843833 0.715484703 0.214553649 0.164062684 10397568.74 547300.393 301568862 0.041060587 2.61E-12 11.58375476 -5.98835913 FLAAVAHSPLAAQLKPMT(ph)PFKR ddPTM_HeLa_A486_30min_R1 2 FLAAVAHSPLAAQLKPMTPFKR 22 2 Q5JR04;Q9HCE1;Q9HCE1-2 Q5JR04 MOV10 Putative helicase MOV-10 1 0 FLAAVAHSPLAAQLKPMT(1)PFKR;FLAAVAHSPLAAQLKPMT(1)PFKR ; 179.76 1.43E-19 531370000 692010 618590 277040 373030 583920 768830 1006270 917060 504700 1058500 TRUE FALSE FALSE 643503.6725 569570.6755 384317.3074 868432.6919 510679.3088 673979.5715 754490.6028 708265.4573 548447.8024 793444.7103 0.811025222 0.717845451 0.48436558 1.094509398 0.643623055 0.849434829 0.950905076 0.892646265 0.691223718 1 19.59777017 -5.253795419 24.99959484 0.862651512 0.675755445 0.28503742 0.146814954 823.2376354 2692395.518 0.039050647 0.066021955 5.57E-06 5.253795419 -0.186896067 FLAAVQLPDGFNLLCPT(ph)PPPPPDTGPEKLPSLEHR ddPTM_HeLa_A485_30min_R1 1 FLAAVQLPDGFNLLCPTPPPPPDTGPEKLPSLEHR 35 1 Q96PE2;A0A2R8Y4D7 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 FLAAVQLPDGFNLLCPT(0.999)PPPPPDT(0.001)GPEKLPSLEHR 156.18 6.54E-10 36515000 21807 31890 26902 17755 42275 32839 37493 46504 28122 36373 TRUE FALSE FALSE 26657.89192 35619.25809 36854.16929 18724.91069 38065.95256 34558.39926 29482.31426 35098.82108 33765.82745 27305.8805 0.976269266 1.304453746 1.349678846 0.685746453 1.394056953 1.265602816 1.07970568 1.285394225 1.236577134 1 14.73692406 FLCIFLEK ddPTM_HeLa_A486_30min_R1 1 FLCIFLEK 8 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 119.21 0.0054179 6299300 8473.6 8687.9 5519.3 3053.9 7081 7247.2 7681.3 7531.7 7060.1 8850.6 FALSE FALSE TRUE 7879.644398 7999.439163 7656.520772 7109.633536 6192.834952 6353.114148 5759.357495 5816.896326 7672.075153 6634.352152 1.18770367 1.205760409 1.154072108 1.071639457 0.93344984 0.957608822 0.868111515 0.876784378 1.156416629 1 12.69573988 -5.447893326 2.102644591 0.953327526 1.192276408 0.615752 0.07661748 0.204181489 1.784196434 0.024281294 0.039893058 3.57E-06 5.447893326 0.238948882 FLDAGHKLNFAVASR ddPTM_HeLa_A486_30min_R1 1 FLDAGHKLNFAVASR 15 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 91.657 0.002852 18208000 20970 20007 16197 9566 23972 18313 21616 21497 15434 24569 FALSE FALSE TRUE 19500.11129 18421.57246 22468.91217 22270.13144 20965.20823 16053.72825 16207.44817 16602.60238 16771.83155 18416.76248 1.058824064 1.000261174 1.220025083 1.209231615 1.138376425 0.871691117 0.880037856 0.901494081 0.910682948 1 14.16873185 -6.257866052 24.8851312 0.904578117 1.128315173 0.704930645 0.068645574 171.4525386 1194019.231 0.025120063 0.024177015 5.52E-07 6.257866052 0.223737056 FLDFFSKAIQCARQEK ddPTM_HeLa_A485_30min_R1 1 FLDFFSKAIQCARQEK 16 2 Q13315;E9PIN0 Q13315 ATM Serine-protein kinase ATM 0 0 55.173 0.031371 36721000 41944 36801 24867 40979 45169 52770 72934 76340 37074 58784 FALSE FALSE TRUE 51274.29809 41104.55682 34066.3381 43217.57901 40671.81576 55532.9556 57351.05508 57617.4953 44514.41174 44130.23064 1.161886021 0.931437616 0.771950149 0.979319128 0.921631616 1.258388066 1.29958657 1.30562416 1.008705622 1 15.42947967 -6.256631727 24.82552482 1.201382752 0.943410016 0.395813777 0.134341624 341.0864516 1761288.331 0.045329926 0.043957294 5.54E-07 6.256631727 -0.257972736 FLDFIGHILT ddPTM_HeLa_A485_30min_R1 1 FLDFIGHILT 10 0 P48426;P48426-2;H7BXS3 P48426 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 0 0 119.27 0.0058445 13180000 38779 55511 50336 37663 61702 44492 59754 62466 42692 56988 FALSE FALSE TRUE 47405.25476 62002.52857 68957.38106 39720.43432 55558.73223 46821.53232 46987.06975 47146.11556 51259.89281 42781.94039 1.108066963 1.449268734 1.611833882 0.928439289 1.29864919 1.094422831 1.098292161 1.102009753 1.198166618 1 15.3847143 -5.265147777 24.99907218 1.114721398 1.395677744 0.436360844 0.148934078 298.3395874 2011170.871 0.04078455 0.063277548 5.43E-06 5.265147777 0.280956345 FLEESVSMS(ph)PEER ddPTM_HeLa_A485_30min_R1 1 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 1 0 FLEESVS(0.004)MS(0.996)PEER 131.53 1.88E-05 83498000 38486 56685 55165 36362 60331 52266 64670 65648 55323 50603 TRUE FALSE FALSE 47047.07792 63313.81766 75572.82911 38348.36399 54324.23381 55002.56694 50852.72619 49547.72507 66425.81865 37988.60338 1.238452424 1.666652944 1.98935529 1.009470225 1.430013977 1.447870204 1.338631107 1.304278669 1.748572275 1 15.21327905 -5.263331285 24.99998504 1.348220984 1.635003473 0.216358324 0.264339515 275.1668955 3636118.317 0.07223566 0.113603721 5.45E-06 5.263331285 0.28678249 FLEESVSMS(ph)PEER ddPTM_HeLa_A486_30min_R1 2 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 1 0 FLEESVSMS(1)PEER;FLEESVSMS(1)PEER ; 213.67 2.26E-22 222985000 313659 369300 303323 116294 375223 299965 350349 351644 296279 310128 TRUE FALSE FALSE 291673.1238 340035.323 420777.7889 270738.3092 328159.0325 262958.3681 262687.9746 271582.3375 321960.7023 232469.9302 1.254670329 1.462706694 1.810031037 1.164616469 1.411619267 1.131150028 1.129986895 1.168247168 1.384956334 1 17.82668459 -5.309835394 24.99982768 1.208863746 1.504493749 0.410875949 0.170035888 381.9169355 197285.2161 0.047826127 0.070937807 4.90E-06 5.309835394 0.295630003 FLENGS(ph)QEDLLHGNPGSTYLASNSTSAPNWK ddPTM_HeLa_A485_30min_R1 2 FLENGSQEDLLHGNPGSTYLASNSTSAPNWK 31 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK;FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK ; 202.68 3.44E-29 591100000 95825 105765 82127 80904 131399 112853 140433 142938 86839 141596 TRUE FALSE FALSE 117140.9407 118133.2967 112509.1949 85323.58066 118316.4542 118761.8086 110428.3423 107882.2314 104266.7908 106298.7231 1.101997628 1.111333168 1.058424708 0.802677381 1.113056213 1.117245863 1.03884919 1.014896776 0.980884697 1 16.69776474 -5.0008894 24.98079794 1.013383871 1.101218828 0.184157531 0.081919543 62.26871871 1749194.071 0.02262557 0.046220548 9.98E-06 5.0008894 0.087834957 FLENGS(ph)QEDLLHGNPGSTYLASNSTSAPNWK ddPTM_HeLa_A486_30min_R1 3 FLENGSQEDLLHGNPGSTYLASNSTSAPNWK 31 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK;FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK;FLENGS(1)QEDLLHGNPGSTYLASNSTSAPNWK ;; 322.16 9.34E-110 1734700000 1154470 1106980 768589 247702 1214910 1071920 1229290 1239260 963510 1225360 TRUE FALSE FALSE 1073547.615 1019258.873 1066207.244 576662.7742 1062524.659 939677.4089 921708.6399 957107.5509 1047027.823 918521.8802 1.1687774 1.109672938 1.160785897 0.627816045 1.156776645 1.023032144 1.003469443 1.042008439 1.139905151 1 19.80895456 FLEQS(ph)MDIEDLK ddPTM_HeLa_A485_30min_R1 3 FLEQSMDIEDLK 12 0 O95239;O95239-2;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 FLEQS(1)MDIEDLK;FLEQS(1)MDIEDLK;FLEQS(1)MDIEDLK ;; 213.83 5.24E-18 71051000 176872 150743 90889 210701 147030 135277 185643 165361 105252 261666 TRUE FALSE FALSE 216216.5662 168371.0826 124512.6233 222211.0621 132391.1769 142359.8945 145978.8565 124805.9555 126375.111 196437.4818 1.100688953 0.857122994 0.633853693 1.131205003 0.673960874 0.724708407 0.743131378 0.635346953 0.643335018 1 17.58371071 -5.839109925 25 0.718230812 0.904309064 0.247420194 0.161219056 49.28982431 15862.60223 0.048701096 0.055221871 1.45E-06 5.839109925 0.186078252 FLEQS(ph)MDIEDLK ddPTM_HeLa_A486_30min_R1 3 FLEQSMDIEDLK 12 0 O95239;O95239-2;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 FLEQS(1)MDIEDLK;FLEQS(1)MDIEDLK;FLEQS(1)MDIEDLK ;; 156.5 4.57E-08 112909000 209093 177285 99972 87654 136289 197728 215980 211549 150382 276761 TRUE FALSE FALSE 194436.6605 163236.2909 138683.8357 204062.9418 119194.3628 173334.3297 161939.5196 163383.9108 163417.2328 207458.2442 0.937232749 0.786839258 0.668490357 0.983633803 0.574546282 0.8355143 0.7805885 0.787550822 0.787711443 1 17.66246146 -10.11832007 4.429310743 1.00002553 0.78951429 0.237628996 0.110711832 140292350.2 0.07325415 37460.3953 0.025054817 7.62E-11 10.11832007 -0.21051124 FLES(ph)PSR ddPTM_HeLa_A485_30min_R1 5 FLESPSR 7 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 FLES(0.985)PS(0.015)R;FLES(0.904)PS(0.096)R;FLES(0.911)PS(0.089)R;FLES(0.726)PS(0.274)R;FLES(0.989)PS(0.011)R ;;;; 148.14 0.0010589 1080660000 1390080 2004800 1913540 1422970 2180380 1791350 2113040 2232280 1687850 1955370 TRUE FALSE FALSE 1699298.5 2239243.921 2621438.075 1500703.248 1963293.711 1885142.316 1661571.742 1684809.83 2026586.013 1467932.245 1.157613716 1.525440924 1.785803183 1.022324602 1.337455266 1.284216164 1.131913103 1.147743594 1.380571903 1 20.48535395 -5.275780278 24.99551948 1.200583425 1.49320147 0.362668625 0.183552757 857.471357 1494530.502 0.051324273 0.076504489 5.30E-06 5.275780278 0.292618045 FLES(ph)PSR ddPTM_HeLa_A486_30min_R1 3 FLESPSR 7 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 FLES(0.993)PS(0.007)R;FLES(0.56)PS(0.44)R;FLES(0.995)PS(0.005)R ;; 146.79 0.0011484 874750000 1268980 1439230 1195120 398331 1536130 1185970 1364690 1365150 1153100 1321710 TRUE FALSE FALSE 1180031.055 1325180.173 1657902.47 927334.6985 1343454.252 1039657.079 1023230.128 1054335.146 1253051.636 990745.2131 1.191054006 1.337558997 1.673389332 0.935997153 1.356003778 1.049368764 1.032788364 1.064183942 1.26475669 1 19.91815457 -5.275014015 24.99963201 1.108818378 1.394356625 0.419717549 0.161508609 763.4267088 1405957.865 0.044915733 0.067025623 5.31E-06 5.275014015 0.285538247 FLESAAADFS(ph)DEDEDDDVDGREK ddPTM_HeLa_A485_30min_R1 4 FLESAAADFSDEDEDDDVDGREK 23 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 FLESAAADFS(1)DEDEDDDVDGREK;FLESAAADFS(1)DEDEDDDVDGREK;FLESAAADFS(1)DEDEDDDVDGREK;FLESAAADFS(1)DEDEDDDVDGREK ;;; 328.59 9.71E-123 3747430000 873405 1010930 868926 1379550 1835010 1402150 2359660 2620600 1083320 1972000 TRUE FALSE FALSE 1067690.929 1129149.47 1190377.886 1454911.323 1652309.961 1475564.406 1855499.364 1977893.741 1300732.387 1480416.692 0.721209734 0.762724087 0.804082994 0.982771493 1.11611141 0.996722351 1.253362904 1.33603853 0.878625859 1 20.49757188 -5.357682785 1.41802775 1.125005816 0.72684467 0.590286233 0.124091809 0.288665056 1.140044349 0.042467959 0.08986173 4.39E-06 5.357682785 -0.398161145 FLESAAADFS(ph)DEDEDDDVDGREK ddPTM_HeLa_A486_30min_R1 2 FLESAAADFSDEDEDDDVDGREK 23 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 FLESAAADFS(1)DEDEDDDVDGREK;FLESAAADFS(1)DEDEDDDVDGREK ; 337.29 4.55E-123 2279300000 627210 618870 468260 551980 939180 834920 1172970 1100740 559470 1085530 TRUE FALSE FALSE 583245.8179 569828.4873 649582.8124 1285037.336 821379.2869 731916.0592 879480.4996 850125.531 607965.3101 813706.2224 0.716776893 0.700287735 0.798301395 1.579239903 1.009429772 0.899484407 1.080832953 1.044757319 0.747155783 1 19.6341485 -5.020517565 24.99389793 1.057490239 0.718722732 0.345015928 0.200040398 811.683587 988770.9337 0.055244842 0.097200759 9.54E-06 5.020517565 -0.338767508 FLET(ph)DS(ph)EEEQEEVNEK ddPTM_HeLa_A485_30min_R1 1 FLETDSEEEQEEVNEK 16 0 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 2 0 FLET(1)DS(1)EEEQEEVNEK 321.62 8.90E-102 0 239620 224790 161060 319580 270790 241630 376160 336660 212850 368690 TRUE FALSE FALSE 292922.6423 251077.2351 220642.7963 337037.8462 243829.1968 254281.3732 295790.3431 254093.6071 255567.0426 276782.3682 1.058313953 0.907128719 0.797170707 1.217699842 0.880941941 0.9187051 1.068674804 0.918026711 0.923350155 1 18.07839252 -3.536422089 0.001989766 1.498903131 0.426467997 0 0.113626189 6830930.522 1749.898504 463323.9698 479944.0895 0.000290789 3.536422089 -1.072435135 FLFLLLGPSSANMDYHEIGR ddPTM_HeLa_A485_30min_R1 1 FLFLLLGPSSANMDYHEIGR 20 0 P04920-2;P04920-3;P04920 P04920-2 SLC4A2 Anion exchange protein 2 0 0 56.081 0.017134 8839300 6007.4 16705 4865.7 22800 23884 9605.5 7562.1 6282 4267.8 15861 FALSE FALSE TRUE 7343.725405 18658.50444 6665.724909 24045.50627 21506.0251 10108.42913 5946.395558 4741.32965 5124.308313 11907.1446 0.616749494 1.567000743 0.559808849 2.019418347 1.806144615 0.848938135 0.499397274 0.398191994 0.430355764 1 13.53953987 -6.496045288 5.891837848 0.547388945 1.327975703 0.363293158 0.458718595 0.193030632 21.77216062 0.169900012 0.143337528 3.19E-07 6.496045288 0.780586758 FLFSLFGQK ddPTM_HeLa_A485_30min_R1 2 FLFSLFGQK 9 0 A8MU58;Q13155-2;Q13155 A8MU58 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 0 0 ; ; 263.96 1.20E-32 155651000 348830 333810 354200 413980 571880 289220 478150 379680 307690 564370 FALSE FALSE TRUE 426426.0301 372846.1757 485233.3195 436594.6791 514941.6192 304363.112 375989.3464 286562.8847 369440.5607 423682.9455 1.00647438 0.880012235 1.145274609 1.03047499 1.215393786 0.718374707 0.887430921 0.676361623 0.871974113 1 18.69262553 -6.272143151 24.99972545 0.814138538 1.04936955 0.472667771 0.117921653 616.6017769 1440130.904 0.040370139 0.035960077 5.34E-07 6.272143151 0.235231011 FLFSLFGQK ddPTM_HeLa_A486_30min_R1 2 FLFSLFGQK 9 0 A8MU58;Q13155-2;Q13155 A8MU58 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 0 0 ; ; 290.02 9.67E-54 212125000 515160 525100 344230 195707 481770 513840 643540 580190 456790 565900 FALSE FALSE TRUE 479049.9443 483489.1636 477525.0748 455615.7865 421341.9143 450447.6451 482519.4853 448093.4025 496384.925 424194.9566 1.129315511 1.139780556 1.125720774 1.074071672 0.993274219 1.061888262 1.13749463 1.056338355 1.17018111 1 18.69436794 -5.238064017 4.976345855 1.071882095 1.13337655 0.234306777 0.050724537 0.298200833 21.10726161 0.014262069 0.02421269 5.78E-06 5.238064017 0.061494456 FLGSDEEDKDSLQELS(ph)TEQK ddPTM_HeLa_A485_30min_R1 1 FLGSDEEDKDSLQELSTEQK 20 1 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 FLGSDEEDKDSLQELS(0.819)T(0.181)EQK 123.29 1.84E-07 0 87419 74061 59835 158330 109110 83727 151160 152450 71252 207750 TRUE FALSE FALSE 106865.055 82721.7897 81970.45644 166979.167 98246.62529 88110.81625 118863.4311 115061.3985 85551.62284 155961.7484 0.685200417 0.530397938 0.525580518 1.0706418 0.629940523 0.564951452 0.762131948 0.737753966 0.548542343 1 17.25083271 -10.85088925 2.631793224 1.131155975 0.676082966 0.28492121 0.15543121 93929379.64 59529117.33 77361887.51 0.039053952 1.41E-11 10.85088925 -0.455073009 FLIATGERPR ddPTM_HeLa_A485_30min_R1 2 FLIATGERPR 10 1 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 210.08 2.56E-15 161256000 109872 154141 140253 107205 171765 139285 170814 188528 124309 147867 FALSE FALSE TRUE 134312.6473 172166.4491 192138.4211 113061.3377 154663.4735 146577.7472 134318.1935 142291.2124 149256.6761 111006.4782 1.209953235 1.550958574 1.730875749 1.018511167 1.393283311 1.320443181 1.210003197 1.281828004 1.344576267 1 16.76028435 -13.43131671 0.094550639 1.21E-10 1.615992175 0.263207907 0.181102944 237.6267333 1.73665804 49.3098487 3.869701666 3.70E-14 13.43131671 1.615992175 FLIATGERPR ddPTM_HeLa_A486_30min_R1 2 FLIATGERPR 10 1 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 218.6 3.54E-20 132880000 115066 129080 106031 45295 156677 116551 128190 135465 109103 135913 FALSE FALSE TRUE 107000.4676 118851.2307 147089.0428 105449.0491 137025.1097 102172.1226 96115.50614 104622.5767 118560.1359 101879.5002 1.050264945 1.166586315 1.44375505 1.035036969 1.34497234 1.002872241 0.943423417 1.026924715 1.163729069 1 16.63650426 -6.286830272 24.72381116 1.023824753 1.209290297 0.340664649 0.125663876 776.389445 755988.7567 0.043759044 0.038607893 5.17E-07 6.286830272 0.185465544 FLILPDMLK ddPTM_HeLa_A485_30min_R1 1 FLILPDMLK 9 0 P62318;P62318-2 P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 0 0 114.93 0.010417 0 9201.3 7373.9 6904.8 7958.1 10248 8275.2 8974.3 8478.3 5714.6 9138.2 FALSE FALSE TRUE 11248.09744 8236.213461 9459.172853 8392.830852 9227.673137 8708.476676 7056.867492 6398.983632 6861.467803 6860.214916 1.639612983 1.200576594 1.378844973 1.223406403 1.345099716 1.269417472 1.028665658 0.932767225 1.000182631 1 12.74403806 -6.738344766 2.75106683 0.972845758 1.34161092 0.705371706 0.112860912 0.148633411 2.301025564 0.048623096 0.033384394 1.83E-07 6.738344766 0.368765162 FLILPDMLK ddPTM_HeLa_A486_30min_R1 1 FLILPDMLK 9 0 P62318;P62318-2 P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 0 0 141.47 0.00061962 5124200 49477 53286 37706 20956 59504 57744 67879 66738 45719 68391 FALSE FALSE TRUE 46008.9178 49063.4233 52306.773 48786.62706 52040.45347 50620.13238 50894.95625 51543.21428 49681.95973 51265.44845 0.897464456 0.957046603 1.020312405 0.951647328 1.015117492 0.987412261 0.992773062 1.005418188 0.96911197 1 15.64569919 -4.390927152 3.075804599 0.992079036 0.894043303 0.68621802 0.019711461 0.151101526 2.313240748 0.004674312 0.02990136 4.07E-05 4.390927152 -0.098035733 FLIVAHDDGR ddPTM_HeLa_A485_30min_R1 6 FLIVAHDDGR 10 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;;;;; ;;;;; 126.31 0.00063293 1287446000 710489 851423 866906 694185 1044805 969391 1111794 1233016 738403 994651 FALSE FALSE TRUE 868534.8269 950989.5135 1187610.604 732106.5688 940780.5457 1020146.814 874250.1294 930616.8927 886593.7091 746702.8109 1.16315998 1.273585019 1.590472926 0.980452408 1.259912956 1.36620192 1.170814033 1.24630158 1.187344813 1 19.51017464 -9.372286486 0.35943007 0.926427002 1.283025478 0.219992829 0.146760664 11.4532214 1.623190557 1.192267356 0.121906588 4.24E-10 9.372286486 0.356598477 FLIVAHDDGR ddPTM_HeLa_A486_30min_R1 6 FLIVAHDDGR 10 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;;;;; ;;;;; 134.68 0.00058797 717180000 816512 1044105 980505 395798.5 1404689 1035827 1190008 1209197 1021895 1183550 FALSE FALSE TRUE 759278.7253 961366.3172 1360182.795 921438.9105 1228499.807 908037.1963 892255.4118 933889.2397 1110473.681 887181.3764 0.855832579 1.083618686 1.533150753 1.038613901 1.384722268 1.023507955 1.005719276 1.052647479 1.251687322 1 19.75886956 FLKPDVRLS(ph)R ddPTM_HeLa_A485_30min_R1 2 FLKPDVRLSR 10 2 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;H0YBZ1;H0YB16;Q05397-6;B4DWJ1 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 FLKPDVRLS(1)R;FLKPDVRLS(1)R ; 83.087 0.0040222 942000000 767710 1432270 1118450 756030 1892800 1783260 2194860 3589200 1122020 1341070 TRUE FALSE FALSE 938484.4409 1599761.517 1532211.198 797330.0045 1704346.186 1876628.736 1725910.231 2708943.072 1347199.122 1006765.93 0.932177394 1.589010385 1.521914034 0.791971581 1.692892197 1.864016929 1.714311321 2.69073773 1.338145325 1 19.94129687 -5.977208664 23.31611462 1.821310747 1.25631241 0.204714047 0.466806622 151.6065306 155095.2716 0.139852358 0.158562252 1.05E-06 5.977208664 -0.564998337 FLKPDVRLS(ph)R ddPTM_HeLa_A486_30min_R1 2 FLKPDVRLSR 10 2 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;H0YBZ1;H0YB16;Q05397-6;B4DWJ1 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 FLKPDVRLS(1)R;FLKPDVRLS(1)R ; 80.96 0.0049796 868780000 1468430 1322610 1436320 780950 2638200 1420410 2207790 2427850 1211930 1843050 TRUE FALSE FALSE 1365500.64 1217801.567 1992501.57 1818091.067 2307292.356 1245174.256 1655377.59 1875081.555 1316981.068 1381538.284 0.988391459 0.881482317 1.442234061 1.315990363 1.670089337 0.901295513 1.198213332 1.357241834 0.953271497 1 20.39784411 -7.778520134 24.85088463 0.97663544 1.222470654 0.14588579 0.23483345 529.5456979 770415.6185 0.23276952 0.060726886 1.67E-08 7.778520134 0.245835213 FLKS(ph)PPLHK ddPTM_HeLa_A485_30min_R1 2 FLKSPPLHK 9 1 Q9NYF8-4;E9PJA7 Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FLKS(1)PPLHK;FLKS(1)PPLHK ; 82.85 0.0037425 858870000 882490 840420 522140 1051340 1054150 1078050 1530970 1488980 776960 1443120 TRUE FALSE FALSE 1078796.856 938699.8083 715301.3141 1108772.042 949195.1247 1134495.031 1203865.753 1123805.32 932888.7453 1083376.743 0.995772582 0.866457412 0.66025168 1.023440876 0.876145008 1.047184222 1.111216168 1.037317192 0.861093568 1 20.04710359 -5.793907245 1.745664689 1.013716514 0.85415863 0.23485761 0.109705954 0.484484425 3.052344226 0.040175277 0.052008179 1.61E-06 5.793907245 -0.159557884 FLKS(ph)PPLHK ddPTM_HeLa_A486_30min_R1 2 FLKSPPLHK 9 1 Q9NYF8-4;E9PJA7 Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FLKS(1)PPLHK;FLKS(1)PPLHK ; 93.959 0.0017359 835210000 851770 726120 377360 317090 714390 828670 973050 929820 563710 1083580 TRUE FALSE FALSE 792065.3215 668579.6067 523483.8981 738201.5448 624784.5448 726437.1207 729582.5981 718120.2838 612572.8367 812244.5151 0.975156258 0.823126034 0.64449053 0.908841526 0.769207465 0.894357681 0.898230255 0.884118354 0.754172943 1 19.63155457 -6.285228283 23.87490649 0.879686651 0.818829075 0.087792656 0.098093255 1242.095068 1246580.165 0.03441653 0.030373242 5.19E-07 6.285228283 -0.060857576 FLLGPPQGGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 FLLGPPQGGSPR 12 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 FLLGPPQGGS(1)PR 92.939 0.00092255 0 56493 75198 71917 55345 90697 70249 81432 95270 71689 91044 TRUE FALSE FALSE 69059.67295 83991.75196 98522.09102 58368.35721 81666.88822 73927.12901 64033.38796 71904.88312 86076.32473 68348.40634 1.010406484 1.228876523 1.441468738 0.853982709 1.19486163 1.08162184 0.936867315 1.052034524 1.259375739 1 16.06062008 -5.263488286 24.99903355 1.058400699 1.227113165 0.227531903 0.145764629 278.4375766 3397285.313 0.040417606 0.063482131 5.45E-06 5.263488286 0.168712467 FLLGYFPWDSTK ddPTM_HeLa_A486_30min_R1 1 FLLGYFPWDSTK 12 0 Q8TC07-2;Q8TC07-3;C9JA93;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 0 0 116.52 0.0029766 2543600 3188 2470.4 1396.1 1224.6 3061.9 2870.8 2611.1 2902.3 2634.8 3195.5 FALSE FALSE TRUE 2964.537663 2274.636507 1936.707309 2850.930688 2677.847951 2516.629884 1957.775163 2241.509647 2863.186585 2395.326001 1.237634319 0.949614585 0.808536002 1.190205712 1.117947181 1.05064191 0.817331404 0.935784793 1.1953223 1 11.2260063 FLLYAMDSYWHSR ddPTM_HeLa_A485_30min_R1 2 FLLYAMDSYWHSR 13 0 P61968 P61968 LMO4 LIM domain transcription factor LMO4 0 0 ; ; 200.44 5.69E-15 34283000 21025 33082 35810 16527.8 43088 25644 39275 39446 25468 26319 FALSE FALSE TRUE 25701.93871 36950.65212 49057.60918 17430.67186 38798.00743 26986.68019 30883.5754 29771.80665 30579.19399 19758.15767 1.300826684 1.870146638 2.482904024 0.882201274 1.963644996 1.365850027 1.563079712 1.506810865 1.547674359 1 14.27016081 -11.50186454 0.160585749 4.87E-08 1.848924826 0.185717331 0.402582446 84.26453397 1.654192738 31.89727293 1.921940226 3.15E-12 11.50186454 1.848924777 FLLYAMDSYWHSR ddPTM_HeLa_A486_30min_R1 2 FLLYAMDSYWHSR 13 0 P61968 P61968 LMO4 LIM domain transcription factor LMO4 0 0 ; ; 204.49 3.66E-15 26826000 24564.2 30400 33455 6134.1 46223 27914 37728 35693 30537 25090.3 FALSE FALSE TRUE 22842.37643 27990.99329 46409.67196 14280.4948 40425.28033 24470.25449 28288.05535 27566.48307 33183.97175 18807.52557 1.21453385 1.488286866 2.467611796 0.759296844 2.149420464 1.30108846 1.504081717 1.465715571 1.764398598 1 14.19902243 -10.72664558 2.531380379 0.883581912 1.57290601 0.123717559 0.453563561 21872025.41 16215538.78 16031723.91 0.107472723 1.88E-11 10.72664558 0.689324098 FLMECRNS(ph)PVT(ph)KTPPR ddPTM_HeLa_A485_30min_R1 1 FLMECRNSPVTKTPPR 16 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 FLMECRNS(1)PVT(0.642)KT(0.358)PPR 148.06 3.24E-07 667660000 181920 238580 182230 231010 416960 284980 451330 557330 204410 270910 TRUE FALSE FALSE 222387.4764 266479.8556 249644.4602 243629.4914 375445.9984 299901.1121 354899.6585 420643.9436 245433.212 203377.1227 1.093473412 1.310274489 1.22749529 1.197919845 1.846058167 1.474605935 1.74503235 2.068295283 1.206788693 1 17.63379788 -5.740839005 24.98265332 1.615513736 1.216089734 0.239327945 0.294120917 294.1790736 356757.6076 0.082649507 0.106576973 1.82E-06 5.740839005 -0.399424002 FLMECRNS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 1 FLMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 42 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 FLMECRNS(0.866)PVT(0.599)KT(0.529)PPRDLPT(0.005)IPGVTSPSSDEPPMEASQSHLR 94.791 1.47E-05 367970000 39228 57644 64124 35312 135620 88849 159770 226070 69515 61666 TRUE FALSE FALSE 47954.13327 64384.96436 87846.13602 37241.00515 122117.1966 93500.99625 125633.8343 170625.978 83466.02287 46293.80108 1.035865108 1.390790189 1.897578811 0.804449068 2.637873619 2.019730376 2.713837088 3.685719774 1.802963268 1 15.4985314 -5.772423856 24.99907067 2.449983127 1.333887012 0.323754572 0.709103628 229.4869422 522277.3087 0.21397325 0.244910513 1.69E-06 5.772423856 -1.116096115 FLMECRNS(ph)PVTK ddPTM_HeLa_A485_30min_R1 6 FLMECRNSPVTK 12 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 FLMECRNS(0.946)PVT(0.054)K;FLMECRNS(1)PVTK;FLMECRNS(0.998)PVT(0.002)K;FLMECRNS(1)PVTK;FLMECRNS(1)PVTK;FLMECRNS(1)PVTK ;;;;; 198.89 2.61E-17 33823830000 6543004 8106590 6974905 7567060 12278490 9094200 13609140 14792550 7279920 10179700 TRUE FALSE FALSE 7998472.667 9054585.183 9555212.61 7980429.327 11056000.42 9570358.25 10701436.06 11164653.92 8740933.169 7642088.133 1.046634444 1.184831295 1.250340541 1.044273396 1.446725061 1.252322413 1.400328794 1.460942837 1.143788584 1 22.86553547 -4.529006738 0.763288162 1.296705449 0.992045331 0.12127515 0.151218808 3.36473561 1.944288663 0.060948331 0.82180608 2.96E-05 4.529006738 -0.304660119 FLMECRNS(ph)PVTK ddPTM_HeLa_A486_30min_R1 10 FLMECRNSPVTK 12 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 FLMECRNS(0.994)PVT(0.006)K;FLMECRNS(0.976)PVT(0.024)K;FLMECRNS(1)PVTK;FLMECRNS(0.984)PVT(0.016)K;FLMECRNS(0.998)PVT(0.002)K;FLMECRNS(1)PVTK;FLMECRNS(0.996)PVT(0.004)K;FLMECRNS(0.975)PVT(0.025)K;FLMECRNS(0.999)PVT(0.001)K;FLMECRNS(0.999)PVT(0.001)K ;;;;;;;;; 162.64 1.37E-10 29892143000 9480187 10565356 7954600 5379072 14954917 10620922 15738796 15930282 7876734 13178452 TRUE FALSE FALSE 8815674.847 9728118.712 11034834.15 12522751.46 13079131.86 9310620.629 11800782.77 12303304.54 8559495.645 9878481.842 0.89241191 0.984778721 1.117057695 1.267679757 1.324002217 0.942515336 1.194594773 1.245465117 0.866478856 1 23.23585791 -4.640700882 2.934843422 1.138408466 0.905601829 0.214334609 0.140616498 0.365430392 6.007036638 0.03711472 0.13312919 2.29E-05 4.640700882 -0.232806638 FLMECRNS(ph)PVTKT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 FLMECRNSPVTKTPPR 16 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 FLMECRNS(1)PVT(0.04)KT(0.96)PPR 141.97 4.91E-07 531180000 272320 424760 299520 353640 807200 515810 855800 982960 388020 585420 TRUE FALSE FALSE 332896.6445 474431.9871 410324.9121 372958.4577 726832.3337 542817.014 672951.3388 741887.5188 465892.0549 439485.5679 0.757468888 1.079516648 0.933648206 0.84862504 1.653825261 1.235119089 1.531225114 1.688081641 1.060084992 1 18.74545626 -5.747263144 24.99973401 1.397971717 0.919352829 0.484192553 0.22880496 189.1693169 333597.8288 0.064484681 0.082844042 1.79E-06 5.747263144 -0.478618888 FLMECRNS(ph)PVTKT(ph)PPR ddPTM_HeLa_A486_30min_R1 3 FLMECRNSPVTKTPPR 16 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 FLMECRNS(1)PVT(0.149)KT(0.851)PPR;FLMECRNS(1)PVT(0.159)KT(0.841)PPR;FLMECRNS(0.995)PVT(0.054)KT(0.951)PPR ;; 109.89 0.001038 673220000 304865 318181 277672 274086 672090 390676 658100 702310 259272 450976 TRUE FALSE FALSE 283495.5378 292967.1788 385194.0347 638086.0595 587790.2052 342478.3672 493436.4193 542409.3443 281745.9057 338048.6742 0.838623427 0.866641999 1.139463231 1.887556758 1.738773881 1.013103714 1.459660862 1.604530311 0.833447746 1 18.36687146 -4.963499434 4.883109726 1.401389754 0.871270054 0.279077616 0.321548081 0.228551004 13.12898936 0.086534609 0.18282989 1.09E-05 4.963499434 -0.530119699 FLMPEAYPS(ph)SPR ddPTM_HeLa_A485_30min_R1 2 FLMPEAYPSSPR 12 0 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.5)S(0.5)PR;FLMPEAYPS(0.5)S(0.5)PR ; 150.69 1.22E-07 138020000 252050 334620 330370 240800 366330 295530 369280 387100 284720 336350 TRUE FALSE FALSE 308117.6529 373750.8982 452587.6108 253954.2943 329856.8989 311003.4938 290380.3113 292163.1181 341860.6924 252504.1351 1.220247949 1.480177337 1.792396828 1.005743111 1.306342563 1.231676835 1.150002202 1.157062707 1.35388156 1 17.94594749 -5.27516348 24.99804295 1.185800474 1.495864394 0.443018317 0.166756776 725.8135645 1322046.249 0.046411993 0.069259687 5.31E-06 5.27516348 0.31006392 FLMPEAYPS(ph)SPR ddPTM_HeLa_A486_30min_R1 4 FLMPEAYPSSPR 12 0 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.5)S(0.5)PR;FLMPEAYPS(0.667)S(0.333)PR;FLMPEAYPS(0.5)S(0.5)PR;FLMPEAYPS(0.5)S(0.5)PR ;;; 149.23 1.42E-07 1214220000 1079657 1213452 1110784 404968 1340683 1072285 1237853 1187866 1009797 1217250 TRUE FALSE FALSE 1003978.62 1117293.644 1540909.313 942785.9699 1172522.037 939997.3789 928129.0867 917414.8427 1097327.017 912442.677 1.100319664 1.224508314 1.688773828 1.033255013 1.285036382 1.030198831 1.017191666 1.005449291 1.202625704 1 19.7993744 -5.962747432 1.593369801 1.050728443 1.304730021 0.266991243 0.172840874 0.50614889 2.629783913 0.067883439 0.077664754 1.09E-06 5.962747432 0.254001578 FLMPEAYPSS(ph)PR ddPTM_HeLa_A485_30min_R1 4 FLMPEAYPSSPR 12 0 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPSS(1)PR;FLMPEAYPSS(1)PR;FLMPEAYPS(0.006)S(0.994)PR;FLMPEAYPSS(1)PR ;;; 246.25 4.57E-28 1110080000 1072008 1450680 1404750 1012786 1571300 1233020 1515450 1581790 1198930 1351320 TRUE FALSE FALSE 1310472.481 1620324.407 1924425.482 1068111.935 1414855.855 1297579.021 1191661.727 1193853.522 1439544.254 1014460.793 1.291792142 1.597227234 1.896993452 1.052886363 1.394687566 1.279082473 1.174674995 1.176835547 1.419024041 1 19.95228168 -5.273761679 24.99459614 1.229868899 1.59552659 0.472946436 0.183991346 654.561532 1327713.465 0.051072718 0.076381779 5.32E-06 5.273761679 0.365657691 FLMPEAYPSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 FLMPEAYPSSPR 12 0 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.104)S(0.896)PR 139.46 5.36E-06 85218000 108190 112770 107280 31619 137750 107470 117220 119460 88541 114130 TRUE FALSE FALSE 100606.4397 103833.6945 148821.6891 73610.62994 120472.1105 94211.44407 87890.31617 92261.56579 96215.80517 85551.10514 1.175980597 1.213703719 1.739564776 0.860428744 1.408188829 1.101230007 1.02734285 1.078438036 1.124658823 1 16.38449887 -6.168461718 1.032228168 1.054711208 1.309523235 0.191635665 0.209557736 0.880953942 1.989982765 0.110406696 0.109678324 6.78E-07 6.168461718 0.254812026 FLMPEAYPSS(ph)PRK ddPTM_HeLa_A485_30min_R1 2 FLMPEAYPSSPRK 13 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.133)S(0.867)PRK;FLMPEAYPS(0.215)S(0.785)PRK ; 152.34 2.81E-08 998130000 582740 625500 451870 585100 837820 699270 917660 1057950 555290 766770 TRUE FALSE FALSE 712368.5026 698646.7839 619035.5169 617062.5314 754403.699 735882.6959 721594.4444 798486.1037 666731.6096 575628.3504 1.23754937 1.213711561 1.075408319 1.071980786 1.31057426 1.27839898 1.253576972 1.387155624 1.158267499 1 19.13477812 -5.768306858 24.99953918 1.254152575 1.148933569 0.097934881 0.108915375 280.479569 1021022.863 0.032665437 0.037852212 1.70E-06 5.768306858 -0.105219006 FLMPEAYPSS(ph)PRK ddPTM_HeLa_A486_30min_R1 2 FLMPEAYPSSPRK 13 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.158)S(0.842)PRK;FLMPEAYPS(0.021)S(0.979)PRK ; 177.74 2.22E-13 901280000 779060 734550 506360 331380 866030 819040 971530 992880 570800 933230 TRUE FALSE FALSE 724451.9171 676341.5828 702436.1528 771469.387 757404.442 717995.1722 728442.9182 766822.8984 620277.4036 699543.1337 1.035607216 0.966833281 1.004135584 1.102818897 1.082712996 1.026377271 1.04131237 1.096176721 0.886689289 1 19.41605349 -9.752330707 9.004178906 0.999999947 1.030834058 0.013525375 0.061548329 0 0 0.058994391 0.014308242 1.77E-10 9.752330707 0.030834112 FLMRMRLTPDCS(ph)K ddPTM_HeLa_A485_30min_R1 1 FLMRMRLTPDCSK 13 2 Q5QP82;Q5QP82-2;A0A0A0MQT4 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 0 FLMRMRLT(0.005)PDCS(0.995)K 62.89 0.0026345 0 67616 82596 69947 98638 110370 79361 107540 94906 95955 148330 TRUE FALSE FALSE 82656.94593 92254.88371 95823.30604 104026.3442 99381.17527 83516.21924 84563.20048 71630.15469 115212.2883 111354.0608 0.742289462 0.828482437 0.860528169 0.934194437 0.89247913 0.750006049 0.759408322 0.643264863 1.034648288 1 16.76479465 -7.79218354 24.99999011 1.017324692 0.808568542 0.536661818 0.080052511 200.1411147 162742.1743 0.084200759 0.021750192 1.61E-08 7.79218354 -0.20875615 FLNEHLQEACT(ph)PELKPVEK ddPTM_HeLa_A486_30min_R1 1 FLNEHLQEACTPELKPVEK 19 1 Q8N3C0;Q8N3C0-4 Q8N3C0 ASCC3 Activating signal cointegrator 1 complex subunit 3 1 0 FLNEHLQEACT(1)PELKPVEK 103.9 0.00010891 113370000 82806 100970 67881 131210 107950 107170 136180 119980 78397 126960 TRUE FALSE FALSE 77001.72701 92968.76947 94166.34112 305463.511 94409.90441 93948.45502 102106.3236 92663.17314 85192.51508 95168.38963 0.809110329 0.976887072 0.989470784 3.209716085 0.992030072 0.987181305 1.072901664 0.97367596 0.895176596 1 16.53819484 FLNRS(ph)PEESFDIK ddPTM_HeLa_A485_30min_R1 2 FLNRSPEESFDIK 13 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 FLNRS(1)PEESFDIK;FLNRS(1)PEESFDIK ; 105.28 0.00020856 133327000 115885 124632 114582 197213 167755 154588 201751 177084 134701 298640 TRUE FALSE FALSE 141663.2185 139206.6282 156970.65 207986.2468 151052.7232 162681.9886 158645.2507 133653.8713 161734.2551 224194.5441 0.631876298 0.620918894 0.700153746 0.927704319 0.673757356 0.725628669 0.707623155 0.596151311 0.721401387 1 17.77439164 -10.62185363 2.308555408 1.03990393 0.701987708 0.516865675 0.086836023 2431363.683 1849043.933 580244.8526 0.023964778 2.39E-11 10.62185363 -0.337916222 FLNRS(ph)PEESFDIK ddPTM_HeLa_A486_30min_R1 1 FLNRSPEESFDIK 13 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 FLNRS(1)PEESFDIK 88.992 0.00082787 101710000 48614 48229 28214 22757 53999 56912 62984 63125 41228 75244 TRUE FALSE FALSE 45206.40964 44407.15839 39139.2164 52979.44608 47225.9419 49890.77608 47224.73702 48752.81551 44801.67624 56402.41264 0.8014978 0.787327285 0.693928053 0.939311699 0.837303578 0.88455039 0.837282216 0.864374647 0.794321983 1 15.78346926 -14 0.110387174 1.509841226 0.736730267 0.428464154 0.061220813 169.4605317 1.24044607 19.88003271 0.78195947 1.00E-14 14 -0.773110959 FLPIS(ph)STPQPER ddPTM_HeLa_A486_30min_R1 2 FLPISSTPQPER 12 0 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.749)S(0.028)T(0.223)PQPER;FLPIS(0.393)S(0.393)T(0.214)PQPER ; 222.73 4.70E-23 484260000 484210 590040 514720 191809 735390 528170 582990 625640 488870 489640 TRUE FALSE FALSE 450269.3795 543283.0815 714033.3687 446541.0455 643150.529 463009.7554 437119.7358 483195.4296 531245.6452 367030.957 1.226788561 1.480210514 1.94543091 1.216630469 1.752305948 1.261500554 1.190961491 1.316497752 1.447413727 1 18.48554223 -6.324753736 16.8370145 1.259771013 1.52812913 0.271743428 0.229167231 11.27481005 2997.050514 0.078934542 0.069613101 4.73E-07 6.324753736 0.268358117 FLPISST(ph)PQPER ddPTM_HeLa_A485_30min_R1 4 FLPISSTPQPER 12 0 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.11)S(0.11)T(0.78)PQPER;FLPIS(0.02)S(0.02)T(0.96)PQPER;FLPIS(0.04)S(0.04)T(0.92)PQPER;FLPIS(0.287)S(0.287)T(0.425)PQPER ;;; 206.74 1.37E-16 952610000 752310 1039390 968690 705710 1219520 948290 1069590 1231180 873120 983080 TRUE FALSE FALSE 919658.7641 1160937.619 1327048.742 744261.1503 1098100.307 997940.9981 841063.3588 929231.1746 1048347.175 738016.2482 1.246122651 1.573051571 1.798129438 1.008461741 1.487908036 1.352193804 1.139627157 1.259093112 1.420493353 1 19.49329305 -12.36108323 0.075940965 4.66E-07 1.820901901 0.243409246 0.208104935 265.0367923 1.996333227 53.21695239 9.809855187 4.35E-13 12.36108323 1.820901435 FLPISST(ph)PQPER ddPTM_HeLa_A486_30min_R1 2 FLPISSTPQPER 12 0 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.138)S(0.244)T(0.619)PQPER;FLPIS(0.143)S(0.007)T(0.85)PQPER ; 192.71 1.02E-12 331490000 428530 479350 440140 144463 534970 408370 478850 487160 403710 400810 TRUE FALSE FALSE 398492.2599 441364.5602 610573.9954 336317.1648 467869.0742 357989.4614 359036.6652 376244.3026 438703.9079 300444.5672 1.326342039 1.469038247 2.032235101 1.11939839 1.557255898 1.191532484 1.195017998 1.252291916 1.460182529 1 18.19673931 -5.309256045 24.99942744 1.271797329 1.595190623 0.341630662 0.224943346 465.0137027 243116.6774 0.062404741 0.09256141 4.91E-06 5.309256045 0.323393294 FLPISST(ph)PQPERR ddPTM_HeLa_A485_30min_R1 4 FLPISSTPQPERR 13 1 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.003)S(0.018)T(0.979)PQPERR;FLPISS(0.002)T(0.998)PQPERR;FLPISS(0.002)T(0.998)PQPERR;FLPIS(0.014)S(0.124)T(0.863)PQPERR ;;; 168.41 4.74E-12 728030000 253878 370670 324026.5 210832 372736.1 319774 393479.1 467401.7 282399 290006 TRUE FALSE FALSE 310352.2852 414016.6321 443897.3862 222349.2183 335625.1851 336516.8722 309409.0759 352770.7002 339073.889 217712.8414 1.42551208 1.901663813 2.038912282 1.021295836 1.541595723 1.545691426 1.421179724 1.620348612 1.557436332 1 17.73206698 -12.05862533 0.191760357 4.53E-15 1.688353399 0.298398162 0.260030759 79.56810103 1.526351218 33.8816339 0.779800843 8.74E-13 12.05862533 1.688353399 FLPISST(ph)PQPERR ddPTM_HeLa_A486_30min_R1 4 FLPISSTPQPERR 13 1 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPISS(0.004)T(0.996)PQPERR;FLPIS(0.004)S(0.027)T(0.969)PQPERR;FLPIS(0.001)S(0.015)T(0.983)PQPERR;FLPIS(0.001)S(0.01)T(0.989)PQPERR ;;; 161.84 7.84E-12 651230000 411499 404850 362895 155913 499380 334096 414068 453260 303252 390396 TRUE FALSE FALSE 382655.0451 372768.2116 503417.6627 362973.3434 436743.1039 292878.6324 310463.8068 350062.5926 329538.1275 292638.3005 1.307604112 1.273818946 1.720272643 1.240348043 1.492433161 1.000821259 1.060913101 1.196229584 1.126093635 1 18.15875908 -6.261168959 24.99999989 1.088082209 1.407659469 0.588416538 0.13787056 18.5818626 1717924.587 0.046721304 0.044009982 5.48E-07 6.261168959 0.31957726 FLPLFDR ddPTM_HeLa_A486_30min_R1 2 FLPLFDR 7 0 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 ; ; 114.72 0.015601 26138000 26624.1 32691 25982 11270.9 39218 28604 32735 33215 31800 33794 FALSE FALSE TRUE 24757.88808 30100.4461 36042.92622 26239.2248 34298.91275 25075.1293 24544.35676 25652.66958 34556.4496 25331.76244 0.97734566 1.188249186 1.422835316 1.035823104 1.35398841 0.989869117 0.96891627 1.012668173 1.364154969 1 14.62865983 -6.285866428 24.96327731 1.061775632 1.198979627 0.135843204 0.16169427 1565.192995 1599546.845 0.056691145 0.050019652 5.18E-07 6.285866428 0.137203995 FLPLNIRNS(ph)PFTR ddPTM_HeLa_A485_30min_R1 2 FLPLNIRNSPFTR 13 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 FLPLNIRNS(0.773)PFT(0.227)R;FLPLNIRNS(0.864)PFT(0.136)R ; 126.56 0.000378 656280000 238260 381200 350890 233140 442050 415490 475970 563510 290760 315310 TRUE FALSE FALSE 291260.115 425778.024 480698.8128 245875.8479 398037.9499 437244.4139 374275.1212 425308.289 349112.865 236709.0199 1.230456343 1.798740176 2.030758325 1.038726146 1.681549567 1.847181042 1.581161214 1.796755735 1.474860845 1 17.85275516 -8.026404923 18.04202246 0.999999981 1.633304326 0.312201732 0.279043821 69.4657435 47466.4243 0.264994804 0.068421994 9.41E-09 8.026404923 0.633304344 FLPLNIRNS(ph)PFTR ddPTM_HeLa_A486_30min_R1 2 FLPLNIRNSPFTR 13 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 FLPLNIRNS(0.962)PFT(0.038)R;FLPLNIRNS(1)PFTR ; 123.95 0.00044431 3166800000 552570 508600 554130 246640 795160 553480 704410 758410 512000 613090 TRUE FALSE FALSE 513837.6965 468296.6837 768703.9761 574190.3845 695423.6182 485197.265 528159.1675 585736.599 556380.5722 459568.2735 1.118087836 1.01899263 1.672665457 1.249412585 1.513210677 1.055767539 1.149250716 1.274536631 1.21065923 1 18.80991968 -6.286822465 24.98419479 1.155901867 1.314343289 0.179107745 0.18691077 1609.186204 1583892.087 0.067771167 0.059790606 5.17E-07 6.286822465 0.158441422 FLPLNIRNSPFT(ph)R ddPTM_HeLa_A486_30min_R1 1 FLPLNIRNSPFTR 13 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 FLPLNIRNS(0.25)PFT(0.75)R 109.95 0.00072782 322500000 324390 306950 294030 127930 416210 282800 337600 368020 240520 340810 TRUE FALSE FALSE 301651.9362 282626.1641 407886.2904 297827.5052 364005.0608 247911.0113 253128.9092 284229.8798 261368.4673 255468.9577 1.180777261 1.106303352 1.59661782 1.165807024 1.424850456 0.970415402 0.990840185 1.112580888 1.023092863 1 17.96278847 -6.271612423 24.98272382 1.024638058 1.293988664 0.505304444 0.136238074 613.5635767 1506771.221 0.047512562 0.042365921 5.35E-07 6.271612423 0.269350606 FLPS(ph)PVVIK ddPTM_HeLa_A485_30min_R1 2 FLPSPVVIK 9 0 H7C399;A0A087WTG3;Q13618-3;Q13618-2;Q13618 H7C399 CUL3 Cullin-3 1 0 FLPS(1)PVVIK;FLPS(1)PVVIK ; 141.95 0.00011965 456640000 830920 918420 767420 1000670 1109810 978020 1265390 1279230 851410 1326520 TRUE FALSE FALSE 1015755.287 1025821.23 1051320.593 1055334.068 999313.4196 1029227.615 995029.0892 965496.8367 1022280.177 995842.9768 1.019995432 1.030103394 1.055709201 1.05973943 1.00348493 1.033523998 0.999182715 0.969527184 1.026547559 1 19.92555875 -6.449366929 1.408253184 0.996561705 1.038944347 0.408319363 0.020110557 0.399356593 1.60179412 0.010328374 0.007993925 3.55E-07 6.449366929 0.042382642 FLPS(ph)PVVIK ddPTM_HeLa_A486_30min_R1 2 FLPSPVVIK 9 0 H7C399;A0A087WTG3;Q13618-3;Q13618-2;Q13618 H7C399 CUL3 Cullin-3 1 0 FLPS(1)PVVIK;FLPS(1)PVVIK ; 86.898 0.0040739 519330000 1093790 1145620 763960 408390 1098340 1156470 1234710 1191690 997580 1328500 TRUE FALSE FALSE 1017120.969 1054836.899 1059785.772 950752.5589 960575.9556 1013796.49 925772.4986 920368.2014 1084051.038 995834.9529 1.021375044 1.05924872 1.064218291 0.95472905 0.964593533 1.01803666 0.929644512 0.924217611 1.088585046 1 19.92554713 -5.257219504 24.95846163 0.978162981 1.049377491 0.292725834 0.046215853 412.7957218 2441476.061 0.012498503 0.020712241 5.53E-06 5.257219504 0.071214511 FLQDYFDGNLKR ddPTM_HeLa_A485_30min_R1 2 FLQDYFDGNLKR 12 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 134.21 4.63E-05 221915000 176458 232986 197658 212511 282023 232996 305327 336544 203534 277080 FALSE FALSE TRUE 215710.4733 260231.686 270779.9194 224119.9378 253943.7999 245195.3103 240091.3922 254006.0563 244381.4069 208009.0553 1.037024436 1.25105941 1.301769863 1.077452794 1.220830504 1.178772289 1.15423529 1.221129801 1.174859462 1 17.66628681 -8.061824138 20.29000699 0.999999999 1.184591638 0.344698782 0.074166824 2667.163502 875335.3564 0.069236924 0.017876897 8.67E-09 8.061824138 0.184591638 FLQDYFDGNLKR ddPTM_HeLa_A486_30min_R1 2 FLQDYFDGNLKR 12 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 155.86 1.31E-07 299580000 390040 342610 227664 135482 427840 334810 389500 411360 281730 430020 FALSE FALSE TRUE 362700.2102 315460.3358 315821.5979 315408.9429 374176.3178 293504.5463 292042.9803 317702.3079 306150.5832 322340.193 1.125209384 0.978656533 0.979777281 0.978497096 1.160811856 0.910542814 0.906008579 0.985611831 0.949774772 1 18.29822457 FLQEHGS(ph)DSFLAEHK ddPTM_HeLa_A486_30min_R1 1 FLQEHGSDSFLAEHK 15 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 FLQEHGS(0.5)DS(0.5)FLAEHK 60.564 0.018702 36972000 47873 42702 34300 14205 46521 36203 48885 45133 35064 33750 TRUE FALSE FALSE 44517.34992 39318.138 47581.87859 33069.95788 40685.90239 31736.64195 36653.45595 34857.20115 38103.37575 25298.78032 1.759663879 1.554151524 1.880797334 1.307175977 1.608215964 1.254473201 1.448823045 1.377821409 1.506134891 1 14.62678021 -1 0.044780817 8.43E-12 4.041052648 0.587395012 0.155090813 429.3778417 1.461604276 33.63457917 125.3372394 0.1 1 4.041052648 FLQEHGSDS(ph)FLAEHK ddPTM_HeLa_A485_30min_R1 2 FLQEHGSDSFLAEHK 15 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 FLQEHGS(0.001)DS(0.999)FLAEHK;FLQEHGS(0.002)DS(0.998)FLAEHK ; 218.42 1.15E-33 951290000 510400 592440 516680 407880 802590 530170 790810 727120 581950 689130 TRUE FALSE FALSE 623936.7191 661720.7045 707821.4328 430161.4516 722681.3215 557928.8814 621846.9832 548792.6799 698742.027 517342.5735 1.206041704 1.279076454 1.368187095 0.8314828 1.396910594 1.078451514 1.202002339 1.060791646 1.350637011 1 18.98076039 -14 0.232857958 2.02E-08 1.211797756 0.104881517 0.164109936 388.5138384 3.887764325 184.6482343 0.265365133 1.00E-14 14 1.211797736 FLQEHGSDS(ph)FLAEHK ddPTM_HeLa_A486_30min_R1 3 FLQEHGSDSFLAEHK 15 0 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 FLQEHGS(0.003)DS(0.997)FLAEHK;FLQEHGS(0.003)DS(0.997)FLAEHK;FLQEHGS(0.001)DS(0.999)FLAEHK ;; 211.75 4.57E-26 1133160000 494630 489750 329870 61607 494970 445690 523250 503260 381110 378870 TRUE FALSE FALSE 459958.9913 450940.4264 457604.4982 143424.2094 432886.2472 390705.2992 392327.3156 388678.6841 414144.9217 283998.486 1.619582547 1.587826868 1.611292034 0.505017514 1.524255475 1.375730219 1.381441575 1.368594212 1.458264541 1 18.11552371 FLQFAYFK ddPTM_HeLa_A485_30min_R1 2 FLQFAYFK 8 0 C9JP16;O75718 C9JP16 CRTAP Cartilage-associated protein 0 0 ; ; 144.83 0.00071215 67011000 143102 165999 150423 146563 201290 160812 224906 219814 120642 196576 FALSE FALSE TRUE 174934.5462 185411.1391 206070.7273 154569.3656 181248.8608 169231.8677 176852.9958 165904.2718 144853.7428 147573.2209 1.185408471 1.256400978 1.396396487 1.047407955 1.228196144 1.146765427 1.198408456 1.124216649 0.981572008 1 17.17107142 -7.32158846 0.580013064 0.978930505 1.244198082 0.495618253 0.085043991 0.676064042 0.492354247 0.084065414 0.047763383 4.77E-08 7.32158846 0.265267577 FLQFAYFK ddPTM_HeLa_A486_30min_R1 2 FLQFAYFK 8 0 C9JP16;O75718 C9JP16 CRTAP Cartilage-associated protein 0 0 ; ; 144.83 0.00071215 62575000 138378 149689 116483 50847 167087 146201 176853 170565 136890 178195 FALSE FALSE TRUE 128678.4168 137827.0985 161588.3371 118374.3857 146129.3904 128164.2071 132602.5088 131731.0729 148755.7354 133573.8121 0.963350635 1.031842217 1.209730669 0.886209533 1.093997304 0.959501006 0.99272834 0.986204337 1.113659429 1 17.02727766 -5.27770957 24.99773601 1.005388798 1.064661309 0.109638904 0.082961937 1953.552881 3001462.509 0.022810613 0.033942496 5.28E-06 5.27770957 0.059272511 FLQFFK ddPTM_HeLa_A485_30min_R1 2 FLQFFK 6 0 Q92973-3;Q92973-2;Q92973;O14787-2;O14787;A0A075B780 Q92973-3 TNPO1;TNPO2 Transportin-1;Transportin-2 0 0 ; ; 126.05 0.018101 56455000 110117 136873 107346 112023 170545 124151 176333 181566 111882 159554 FALSE FALSE TRUE 134612.1468 152879.1067 147057.7524 118142.5328 153564.941 130651.3544 138658.014 137036.6538 134335.6912 119780.1242 1.123827076 1.276331176 1.22773084 0.986328355 1.282056953 1.090759884 1.157604527 1.14406839 1.121519051 1 16.87002901 -14 0.131988613 0.454582302 1.22419857 0.271357444 0.082328372 189.9446506 1.570506646 27.22063297 0.587000146 1.00E-14 14 0.769616268 FLQFFK ddPTM_HeLa_A486_30min_R1 2 FLQFFK 6 0 Q92973-3;Q92973-2;Q92973;O14787-2;O14787;A0A075B780 Q92973-3 TNPO1;TNPO2 Transportin-1;Transportin-2 0 0 ; ; 142.42 0.012881 51648000 109589 114481 78650 37591 117151 108238 126409 118966 96726 131032 FALSE FALSE TRUE 101907.377 105409.1086 109105.3863 87513.74774 102456.8292 94884.69604 94780.13118 91880.03881 105110.2876 98220.73432 1.037534261 1.073185915 1.110818271 0.890990567 1.043128316 0.966035295 0.964970704 0.93544443 1.070143573 1 16.58373999 -5.239683733 24.99712114 0.98007155 1.073780128 0.41196394 0.05052155 757.3135584 870147.6252 0.013048764 0.022576693 5.76E-06 5.239683733 0.093708578 FLQLCIFPR ddPTM_HeLa_A485_30min_R1 2 FLQLCIFPR 9 0 A0A0C4DG98;Q8NI27;H0Y815 A0A0C4DG98 THOC2 THO complex subunit 2 0 0 ; ; 161.11 1.15E-05 25520000 24573 27877 27990 21908 31277 23911 35003 43608 22846 35040 FALSE FALSE TRUE 30039.17907 31136.97265 38344.66576 23104.77857 28162.95206 25162.94299 27524.3231 32913.06963 27430.98264 26305.17286 1.141949503 1.183682495 1.457685375 0.878335934 1.070624101 0.956577747 1.046346407 1.251201419 1.042798038 1 14.68305891 -5.267891839 24.99898964 1.044266698 1.253363462 0.432481589 0.118203673 526.5942368 2040202.662 0.034095361 0.051990448 5.40E-06 5.267891839 0.209096763 FLQLCIFPR ddPTM_HeLa_A486_30min_R1 2 FLQLCIFPR 9 0 A0A0C4DG98;Q8NI27;H0Y815 A0A0C4DG98 THOC2 THO complex subunit 2 0 0 ; ; 138.9 0.00072439 24645000 20864.7 22324.8 16679.8 8987 23109.5 19211.9 24002 22778 17312.9 23369.8 FALSE FALSE TRUE 19402.19228 20555.70154 23138.66526 20922.19018 20210.89102 16841.73111 17996.44573 17591.94664 18813.59611 17517.84997 1.107566985 1.173414636 1.320862166 1.194335504 1.153731255 0.961404005 1.027320463 1.004229781 1.07396719 1 14.0965381 -6.100552986 4.144803578 1.015108151 1.203330616 0.717546985 0.055822798 0.131571423 3.933364565 0.019801621 0.020089558 7.93E-07 6.100552986 0.188222465 FLS(ph)PEFIPR ddPTM_HeLa_A485_30min_R1 1 FLSPEFIPR 9 0 A0A0A0MRF4;P49406 A0A0A0MRF4 MRPL19 "39S ribosomal protein L19, mitochondrial" 1 0 FLS(1)PEFIPR 90.108 0.0035489 9127900 16703 24023 20787 20421 30284 23552 31338 28304 23416 29892 TRUE FALSE FALSE 20418.52473 26832.28088 28476.97632 21536.54752 27268.81863 24785.1463 24642.38029 21362.39962 28115.37642 22440.47452 0.909897191 1.195709157 1.269000631 0.9597189 1.2151623 1.104484055 1.098122068 0.951958462 1.252886894 1 14.45381556 FLS(ph)PEFIPR ddPTM_HeLa_A486_30min_R1 2 FLSPEFIPR 9 0 A0A0A0MRF4;P49406 A0A0A0MRF4 MRPL19 "39S ribosomal protein L19, mitochondrial" 1 0 FLS(1)PEFIPR;FLS(1)PEFIPR ; 112.75 0.00080995 10280000 38463 42793 35625 19136.9 49228 39573 51693 49175 35877 49617 TRUE FALSE FALSE 35766.94232 39401.92683 49419.95407 44551.67033 43053.36521 34690.88561 38758.86465 37978.92598 38986.84725 37192.58025 0.961668754 1.059402885 1.328758417 1.197864467 1.157579413 0.932736728 1.042112819 1.021142543 1.048242606 1 15.18272722 -6.240345042 23.87431881 1.012247467 1.150102668 0.332648102 0.093127566 575.4649278 651303.9221 0.033190822 0.033150718 5.75E-07 6.240345042 0.137855201 FLSAIVSSVDKIPYGMR ddPTM_HeLa_A486_30min_R1 1 FLSAIVSSVDKIPYGMR 17 1 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 122.12 8.87E-06 10093000 5577.8 6450 4044.3 1669.5 5648.9 4997.5 6308.2 6794 5955.2 6149 FALSE FALSE TRUE 5186.825024 5938.87851 5610.36127 3886.680372 4940.362288 4380.959261 4729.821639 5247.154512 6471.401531 4609.250377 1.125307718 1.288469496 1.217196032 0.843234811 1.071836391 0.950471097 1.02615854 1.138396503 1.404003038 1 12.17031642 -5.082919178 24.99999999 1.059599525 1.218404746 0.185383215 0.142106204 144.9105337 43688.26374 0.039885095 0.06908305 8.26E-06 5.082919178 0.158805221 FLSGIINFIHFR ddPTM_HeLa_A485_30min_R1 1 FLSGIINFIHFR 12 0 E9PQC4;Q9BZD4;B1AQT3;B1AQT4;E9PP32 E9PQC4 NUF2 Kinetochore protein Nuf2 0 0 176.18 2.30E-09 18678000 19122 28957 29169 19342 41842 17251 35280 29049 17326 31582 FALSE FALSE TRUE 23375.62293 32343.26926 39959.82692 20398.60448 37676.06356 18154.23568 27742.13979 21924.6872 20803.16928 23709.18862 0.985930953 1.364166011 1.685415202 0.860367042 1.589091224 0.765704638 1.170100767 0.924733763 0.877430671 1 14.53315867 -6.27192386 24.99678565 0.95679651 1.298047759 0.329806584 0.248861644 878.1457538 2093643.271 0.084275735 0.075097064 5.35E-07 6.27192386 0.341251249 FLSGIINFIHFR ddPTM_HeLa_A486_30min_R1 2 FLSGIINFIHFR 12 0 E9PQC4;Q9BZD4;B1AQT3;B1AQT4;E9PP32 E9PQC4 NUF2 Kinetochore protein Nuf2 0 0 ; ; 153.63 2.92E-05 14288900 20350.1 25005.7 21831.5 10560.8 27628 23433.2 36237 31815 22300.3 32095 FALSE FALSE TRUE 18923.66308 23024.15726 30285.24147 24586.07611 24162.63862 20542.25004 27170.11932 24571.41902 24233.30796 24058.2031 0.786578407 0.957018991 1.258832231 1.021941498 1.004340953 0.853856373 1.129349487 1.021332263 1.007278385 1 14.55424127 -4.359838698 4.076414168 1.036544367 0.785385982 0.369888479 0.098290869 0.232151782 6.15711505 0.025351385 0.130845187 4.37E-05 4.359838698 -0.251158385 FLSHS(ph)TDSLNK ddPTM_HeLa_A485_30min_R1 3 FLSHSTDSLNK 11 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 FLS(0.019)HS(0.981)T(0.001)DSLNK;FLS(0.007)HS(0.984)T(0.01)DSLNK;FLSHS(0.999)T(0.001)DSLNK ;; 204.94 6.09E-15 2570290000 3173190 3627410 2893670 2847650 4248150 3591150 4693300 5081030 3002760 4456680 TRUE FALSE FALSE 3879055.168 4051604.045 3964158.949 3003209.909 3825189.27 3779177.061 3690538.114 3834899.426 3605386.389 3345711.695 1.159411068 1.210984213 1.184847742 0.897629617 1.143311085 1.129558493 1.103065192 1.146213355 1.077614187 1 21.6738817 -2.550399966 0.013790321 4.03E-07 2.360542012 0.190602206 0.080024103 9824.819668 13.81315523 1011.174056 1378.004395 0.002815789 2.550399966 2.360541608 FLSHS(ph)TDSLNK ddPTM_HeLa_A486_30min_R1 4 FLSHSTDSLNK 11 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 FLS(0.024)HS(0.969)T(0.007)DSLNK;FLS(0.001)HS(0.996)T(0.003)DSLNK;FLS(0.001)HS(0.997)T(0.002)DSLNK;FLSHS(0.999)T(0.001)DSLNK ;;; 210.91 2.64E-15 2061500000 4580060 4483930 2799370 577289 4601660 4266910 5037280 4750900 3545710 3932790 TRUE FALSE FALSE 4259021.445 4128607.057 3883361.034 1343957.967 4024476.894 3740502.027 3776899.265 3669223.781 3853054.998 2947993.786 1.444718597 1.400480244 1.317289423 0.455889009 1.365157862 1.268829685 1.281176128 1.244651125 1.307009199 1 21.49130205 -1.401072272 0.015968006 9.32E-07 2.659681808 0.046921744 0.268933712 23501.78912 30.96714944 2062.612146 3211.51371 0.039712546 1.401072272 2.659680876 FLSHSLVELLNQISPTFKK ddPTM_HeLa_A485_30min_R1 1 FLSHSLVELLNQISPTFKK 19 1 I3L4B5;K7EIG1;I3L2B0;A0A494C0R8;O75153 I3L4B5 CLUH Clustered mitochondria protein homolog 0 0 140.81 5.02E-10 8117600 10858 10992 7977.5 7426.9 12395 11127 16480 20661 5831.9 10725 FALSE FALSE TRUE 13273.32464 12277.41878 10928.70922 7832.612741 11160.91028 11709.59251 12958.91337 15593.85735 7002.308837 8051.454879 1.648562259 1.5248696 1.357358314 0.972819554 1.386197954 1.454344922 1.609512016 1.936775103 0.869694849 1 12.97503378 -7.796386628 24.99992345 0.934845831 1.465880944 0.4681047 0.234325164 204.0494673 145964.2626 0.244566907 0.063157832 1.60E-08 7.796386628 0.531035113 FLSHSLVELLNQISPTFKK ddPTM_HeLa_A486_30min_R1 1 FLSHSLVELLNQISPTFKK 19 1 I3L4B5;K7EIG1;I3L2B0;A0A494C0R8;O75153 I3L4B5 CLUH Clustered mitochondria protein homolog 0 0 137.45 1.34E-08 2861000 11610 8475.2 5077.3 3962.9 9228.8 8132.5 13116 10608 7316.9 12785 FALSE FALSE TRUE 10796.19895 7803.594286 7043.366535 9225.831474 8071.237849 7129.194835 9834.238073 8192.789971 7951.134783 9583.552784 1.126534094 0.814269453 0.734943157 0.962673414 0.842196838 0.743898948 1.026157866 0.854880247 0.829664631 1 13.22634487 -6.768682455 24.99997706 0.915582316 0.864892298 0.046561445 0.119599924 705.472818 2434959.476 0.049301041 0.03401271 1.70E-07 6.768682455 -0.050690018 FLSHSTDS(ph)LNK ddPTM_HeLa_A485_30min_R1 2 FLSHSTDSLNK 11 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 FLSHSTDS(1)LNK;FLSHSTDS(1)LNK ; 129.77 3.29E-05 417770000 482620 446750 363350 564910 663870 522560 766560 685690 447830 861650 TRUE FALSE FALSE 589977.154 498993.5263 497768.2853 595769.6029 597772.7718 549920.4336 602778.1938 517523.4524 537705.3733 646856.5125 0.912068044 0.771413005 0.769518859 0.92102281 0.924119585 0.850142841 0.931857656 0.80005912 0.831259117 1 19.3030862 -11.64042709 2.03163857 3.881499306 0.855956379 0.337641345 0.06014705 3684298.179 247932.5901 48654872.76 0.015883214 2.29E-12 11.64042709 -3.025542927 FLSHSTDS(ph)LNK ddPTM_HeLa_A486_30min_R1 2 FLSHSTDSLNK 11 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 FLSHST(0.002)DS(0.998)LNK;FLSHSTDS(1)LNK ; 160.27 5.66E-08 367460000 601940 568870 292330 148963 518250 627310 756290 718330 424890 702080 TRUE FALSE FALSE 559747.1144 523790.6694 405528.0049 346793.3922 453246.2525 549918.8702 567058.2428 554781.94 461719.8073 526274.5982 1.063602759 0.995280166 0.770563516 0.658959017 0.861235283 1.044927633 1.07749499 1.054168189 0.877336297 1 19.00545624 -6.254701893 23.11973551 1.018340283 0.859651361 0.267034637 0.115722174 270.1063232 926871.6385 0.042940992 0.04191772 5.56E-07 6.254701893 -0.158688922 FLSQPFQVAEVFTGHMGK ddPTM_HeLa_A485_30min_R1 3 FLSQPFQVAEVFTGHMGK 18 0 P06576 P06576 ATP5B "ATP synthase subunit beta, mitochondrial" 0 0 ;; ;; 238.94 4.88E-37 95416000 149422 172346 128612 142432 177305 188646 220213 257537 139858 249726 FALSE FALSE TRUE 182660.4084 192500.3655 176190.9308 150212.6995 159651.8916 198523.2129 173162.6936 194375.6469 167926.2177 187473.9041 0.97432445 1.026811526 0.939815766 0.801245913 0.851595279 1.05893785 0.92366292 1.036814419 0.895731161 1 17.51633026 -6.256079587 24.96704584 0.981619773 0.919402894 0.161315671 0.073230352 969.7229215 4517177.882 0.026399835 0.025670047 5.55E-07 6.256079587 -0.062216879 FLSQPFQVAEVFTGHMGK ddPTM_HeLa_A486_30min_R1 4 FLSQPFQVAEVFTGHMGK 18 0 P06576 P06576 ATP5B "ATP synthase subunit beta, mitochondrial" 0 0 ;;; ;;; 219.87 5.26E-29 114578000 228174 253420 180007 76817 283451 231905 278476 260808 260810 289889 FALSE FALSE TRUE 212180.1809 233338.0763 249710.5312 178833.8581 247897.9325 203294.9189 208798.3594 201427.7118 283417.2208 217298.9075 0.976443845 1.073811548 1.149156864 0.822985537 1.140815365 0.935554261 0.960880852 0.926961456 1.304273565 1 17.7293214 -7.741636992 24.99997289 1.152137069 1.001434458 0.216409255 0.116952236 308.2096021 389108.9457 0.075220238 0.028347404 1.81E-08 7.741636992 -0.150702611 FLSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 FLSSPR 6 0 Q6ZU80;H0YJH2 Q6ZU80 CEP128 Centrosomal protein of 128 kDa 1 0 FLS(0.091)S(0.909)PR 79.454 0.021913 65897000 235460 259650 227410 76209 285700 213660 255440 253860 213520 267160 TRUE FALSE FALSE 218955.4699 239074.3884 315469.2423 177418.4034 249864.842 187300.8015 191526.2102 196061.6197 232028.0855 200261.3971 1.093348359 1.193811647 1.575287334 0.885934114 1.247693493 0.935281608 0.956381075 0.979028523 1.15862612 1 17.61152482 -5.286880444 24.98561574 1.025300818 1.278115499 0.386878894 0.152265917 777.0479097 763135.3025 0.042552521 0.063141818 5.17E-06 5.286880444 0.25281468 FLSTAAVSLMT(ph)PR ddPTM_HeLa_A486_30min_R1 1 FLSTAAVSLMTPR 13 0 C9JS59;C9J266;Q5XPI4;Q5XPI4-2 C9JS59 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 FLSTAAVSLMT(1)PR 153.09 2.09E-07 62278000 33772 35691 29899 14316 42772 34202 40916 42984 30314 47929 TRUE FALSE FALSE 31404.7572 32862.71518 41476.69352 33328.37149 37407.13693 29982.50498 30678.38403 33197.48153 32941.64193 35927.26643 0.874120419 0.914701241 1.154462826 0.927662324 1.041190734 0.834533433 0.853902539 0.924019132 0.916898089 1 15.13279155 -6.258514246 24.98726995 0.897873829 0.985179944 0.169934636 0.083560987 441.0294598 3767397.188 0.028547696 0.027360706 5.51E-07 6.258514246 0.087306115 FLSTLLDSFSSSR ddPTM_HeLa_A485_30min_R1 1 FLSTLLDSFSSSR 13 0 H7BYG8;O94822;O94822-3 H7BYG8 LTN1 E3 ubiquitin-protein ligase listerin 0 0 92.866 0.019798 2453300 1968.9 2961.1 2701.7 2073.7 3018.9 2426.4 2534.5 2397 2460.9 2581.8 FALSE FALSE TRUE 2406.875012 3307.374887 3701.171257 2186.98098 2718.327716 2553.442552 1992.98337 1809.131992 2954.780057 1938.204775 1.241806358 1.706411485 1.909587318 1.128353933 1.402497688 1.317426613 1.028262543 0.933406013 1.52449323 1 10.92050529 -5.280486893 24.81978301 1.195204682 1.627982714 0.416544207 0.232358803 696.9794086 908194.5956 0.066206654 0.098382682 5.24E-06 5.280486893 0.432778032 FLSTLLDSFSSSR ddPTM_HeLa_A486_30min_R1 1 FLSTLLDSFSSSR 13 0 H7BYG8;O94822;O94822-3 H7BYG8 LTN1 E3 ubiquitin-protein ligase listerin 0 0 105.4 0.0049257 3677400 4243.3 4728.9 3180.9 1513.5 4634.8 5234.6 4594.7 4188.6 3790.2 4268.7 FALSE FALSE TRUE 3945.866582 4354.164742 4412.629667 3523.504488 4053.460166 4588.808274 3445.057462 3234.947216 4118.737588 3199.789735 1.233164335 1.360765895 1.379037384 1.101167508 1.26678954 1.434096817 1.076651201 1.010987435 1.287190074 1 11.64376139 -7.386362956 0.41133501 1.005126319 1.320982962 0.316286964 0.123844844 1.298207396 0.607324153 0.154450522 0.120428269 4.11E-08 7.386362956 0.315856643 FLTLPPVLHLQLMR ddPTM_HeLa_A485_30min_R1 4 FLTLPPVLHLQLMR 14 0 A0A669KBL1;Q93009-3;Q93009;F5H2X1;H3BND8 A0A669KBL1 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 0 ;;; ;;; 182.02 1.07E-10 93573000 66935 74333 67547 72239 73348 75595 118875 103762 42294.3 116974 FALSE FALSE TRUE 81824.45983 83025.59774 92535.44617 76185.23365 66045.21558 79553.03731 93476.38513 78314.20681 50782.37806 87814.53455 0.931787206 0.945465328 1.053760026 0.867569748 0.752098908 0.905921072 1.064475096 0.891813721 0.578291263 1 16.42217213 -5.30519111 19.51905524 0.866450245 0.97385004 0.136448744 0.128189039 79.55738413 35492.17902 0.03733632 0.055381446 4.95E-06 5.30519111 0.107399794 FLTLPPVLHLQLMR ddPTM_HeLa_A486_30min_R1 3 FLTLPPVLHLQLMR 14 0 A0A669KBL1;Q93009-3;Q93009;F5H2X1;H3BND8 A0A669KBL1 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 0 0 ;; ;; 192.86 4.14E-12 43226000 21461.2 33722.4 28509.7 17929.1 35708.6 30423.9 40364.1 37332.7 30323.7 39699.6 FALSE FALSE TRUE 19956.88071 31050.11421 39549.41936 41739.85089 31229.69442 26670.50855 30264.57525 28832.85918 32952.18273 29758.56176 0.67062652 1.043401037 1.329009771 1.402616539 1.04943561 0.896229756 1.017003963 0.968892899 1.107317719 1 14.86101718 -5.992302573 24.99344758 0.994438594 1.135089008 0.068729691 0.188914719 471.657046 1531451.112 0.063186647 0.071514978 1.02E-06 5.992302573 0.140650415 FLTWILNR ddPTM_HeLa_A485_30min_R1 2 FLTWILNR 8 0 O43776 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 ; ; 255.97 3.84E-29 317480000 165967 189481 216806 178148 285680 152280 280400 245961 140500 213208 FALSE FALSE TRUE 202885.7866 211639.1547 297011.5615 187879.7741 257236.6961 160253.1453 220490.2493 185638.6791 168697.0613 160059.1694 1.267567409 1.322255735 1.855636029 1.173814502 1.607135018 1.001211901 1.377554627 1.159812835 1.053966867 1 17.2882458 -6.961886762 0.670707595 1.012151708 1.452640771 0.335250502 0.213036145 0.855992806 0.75233678 0.188258277 0.111617049 1.09E-07 6.961886762 0.440489063 FLTWILNR ddPTM_HeLa_A486_30min_R1 2 FLTWILNR 8 0 O43776 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 ; ; 227.47 2.85E-15 313070000 278850 318050 276760 83018 350010 277230 346100 316430 279190 300450 FALSE FALSE TRUE 259304.055 292846.5597 383928.8839 193270.0995 306108.4821 243028.1813 259502.1193 244385.7966 303390.414 225215.3644 1.151360413 1.300295655 1.704718881 0.858156814 1.359181168 1.07909237 1.152239857 1.085120446 1.347112417 1 17.78094573 -5.268473007 24.99962746 1.138264309 1.376942051 0.279946108 0.189926146 746.2692844 2652463.703 0.051509424 0.078283707 5.39E-06 5.268473007 0.238677741 FLVTLR ddPTM_HeLa_A485_30min_R1 2 FLVTLR 6 0 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 ; ; 105.42 0.037206 78071000 69953 98998 90528 66785 114751 89242 113813 110387 77381 111527 FALSE FALSE TRUE 85513.80352 110574.9549 124018.0744 70433.29544 103325.9875 93914.57313 89495.92278 83314.41517 92910.65692 83725.3714 1.021360695 1.320686347 1.481248423 0.841241959 1.234106052 1.121697898 1.068922374 0.995091616 1.109707313 1 16.35337725 -5.25813538 24.99992439 1.063838319 1.279057258 0.335934968 0.142070773 346.8596532 2624525.264 0.03873176 0.063667373 5.52E-06 5.25813538 0.215218939 FLVTLR ddPTM_HeLa_A486_30min_R1 2 FLVTLR 6 0 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 ; ; 114.67 0.026329 64001000 72815 76050 61634 31705 85136 66172 81851 72552 66104 87866 FALSE FALSE TRUE 67711.04452 70023.52103 85500.33542 73810.84228 74457.44902 58008.37143 61371.01407 56033.4934 71833.94794 65863.78169 1.028046717 1.063156704 1.298138874 1.120659039 1.130476373 0.880732475 0.931786978 0.850748195 1.090644146 1 16.00719773 -6.24935482 24.14293155 0.940266912 1.133521563 0.489748805 0.090089373 394.9576533 789059.6788 0.030229124 0.029984006 5.63E-07 6.24935482 0.193254651 FLVTVIK ddPTM_HeLa_A486_30min_R1 1 FLVTVIK 7 0 O14980 O14980 XPO1 Exportin-1 0 0 108.09 0.022597 15045000 20145 22492 15208 9672.1 22114 21165 23936 24410 20700 29293 FALSE FALSE TRUE 18732.93953 20709.65201 21096.94488 22517.1376 19340.25592 18553.87749 17946.95963 18852.37587 22494.29267 21957.84213 0.85313208 0.943155155 0.960793176 1.025471331 0.880790371 0.844977269 0.817337128 0.858571428 1.024430931 1 14.42244866 -2.898317082 14.31166697 0.91547424 0.473212247 0 0.07540804 0 0 0.018094436 0 0.001263813 2.898317082 -0.442261993 FLVYVANFDEKDPR ddPTM_HeLa_A485_30min_R1 1 FLVYVANFDEKDPR 14 1 P50395-2;P50395;Q5SX87;Q5SX86 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 79.089 0.01377 17085000 35308 37507 31147 49284 54920 41030 52102 51651 40178 71465 FALSE FALSE TRUE 43162.14279 41893.11738 42669.57143 51976.26013 49451.97196 43178.26736 40969.98207 38983.51126 48241.35607 53650.09072 0.804512019 0.780858277 0.795330835 0.968800974 0.921750016 0.804812569 0.763651683 0.726625263 0.899184986 1 15.71129299 FLVYVANFDEKDPR ddPTM_HeLa_A486_30min_R1 1 FLVYVANFDEKDPR 14 1 P50395-2;P50395;Q5SX87;Q5SX86 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 92.856 0.0044965 28777000 71287 71656 40644 36722 77884 77300 91127 89995 62101 93806 FALSE FALSE TRUE 66290.14943 65977.71759 56382.44528 85490.67183 68115.06248 67763.51193 68326.06076 69505.10308 67483.96468 70316.36703 0.942741388 0.938298157 0.801839567 1.215800466 0.968694279 0.963694724 0.971694979 0.988462658 0.95971916 1 16.10157291 FMEQS(ph)RSPS(ph)VSPSKQPVSTSSK ddPTM_HeLa_A486_30min_R1 2 FMEQSRSPSVSPSKQPVSTSSK 22 2 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 2 0 FMEQS(0.494)RS(0.494)PS(0.666)VS(0.168)PS(0.168)KQPVS(0.006)T(0.002)S(0.001)S(0.001)K;FMEQS(0.564)RS(0.437)PS(0.545)VS(0.422)PS(0.015)KQPVS(0.013)T(0.003)S(0.001)S(0.001)K ; 83.216 0.010574 452780000 297857 261920 166117 201826 357940 385990 563690 534630 262111 549080 TRUE FALSE FALSE 276978.7624 241164.5053 230441.9512 469861.1277 313043.8275 338370.4783 422648.7999 412906.4199 284830.9925 411586.7941 0.672953473 0.585938394 0.55988665 1.141584556 0.76057792 0.822112087 1.026876484 1.003206191 0.692031417 1 18.65083717 -5.237991297 24.9971403 0.91466412 0.604227346 0.552596063 0.129654954 596.2149186 635602.0497 0.034590573 0.059868974 5.78E-06 5.237991297 -0.310436774 FMEQSRS(ph)PSVSPSK ddPTM_HeLa_A486_30min_R1 1 FMEQSRSPSVSPSK 14 1 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 0 FMEQS(0.032)RS(0.771)PS(0.197)VSPSK 123.19 3.00E-05 0 319810 365000 307240 150250 539100 448910 520890 491540 388380 407540 TRUE FALSE FALSE 297392.9705 336076.0707 426211.5562 349789.5932 471481.0511 393528.0484 390557.8126 379627.0722 422045.0911 305489.3314 0.973497075 1.100123756 1.395176566 1.145014105 1.543363393 1.288189171 1.278466292 1.242685205 1.381537906 1 18.22076247 -4.580601972 4.663664031 1.296616943 0.998667312 0.348571719 0.139069899 0.177154211 7.742745632 0.033401019 0.099993963 2.63E-05 4.580601972 -0.297949632 FMEQSRS(ph)PSVSPSKQPVSTSSK ddPTM_HeLa_A485_30min_R1 2 FMEQSRSPSVSPSKQPVSTSSK 22 2 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 0 FMEQS(0.011)RS(0.957)PS(0.032)VSPSKQPVSTSSK;FMEQS(0.033)RS(0.742)PS(0.183)VS(0.033)PS(0.009)KQPVSTSSK ; 145.34 8.41E-10 1914250000 840050 1095710 763330 851660 1462330 1539180 2125350 2906400 984550 1399580 TRUE FALSE FALSE 1026916.224 1223843.753 1045717.532 898184.0293 1316735.291 1619769.085 1671251.61 2193600.843 1182140.154 1050690.463 0.977372747 1.164799525 0.995266987 0.854851225 1.253209519 1.541623476 1.590622232 2.087770775 1.125107913 1 20.00290628 -6.065980804 3.294435076 1.543648078 1.010664596 0.358386854 0.286893911 0.240779939 5.128022114 0.095429516 0.099172807 8.59E-07 6.065980804 -0.532983481 FMS(ph)SPVLSDLPR ddPTM_HeLa_A485_30min_R1 2 FMSSPVLSDLPR 12 0 E9PJV4;E9PLJ6;E9PL62;E9PP25;E9PS02;E9PP62;E9PIU0;Q6MZQ0-4;Q6MZQ0 E9PJV4 PRR5L Proline-rich protein 5-like 1 0 FMS(0.96)S(0.039)PVLS(0.001)DLPR;FMS(0.5)S(0.5)PVLSDLPR ; 203.39 3.92E-17 177036000 144822 159295 125742 185814 214071 167919 249870 243680 152346 226554 TRUE FALSE FALSE 177037.1543 177923.1646 172259.1984 195964.5483 192757.3396 176710.9792 196483.2332 183917.0979 182920.4448 170078.2572 1.040915853 1.046125281 1.012823163 1.152202236 1.133344983 1.038998059 1.15525192 1.081367489 1.075507521 1 17.37583919 -5.24013409 24.92898831 1.096624133 1.034571815 0.236036158 0.046751433 1046.933978 1224999.545 0.012204255 0.021112379 5.75E-06 5.24013409 -0.062052318 FMS(ph)SPVLSDLPR ddPTM_HeLa_A486_30min_R1 1 FMSSPVLSDLPR 12 0 E9PJV4;E9PLJ6;E9PL62;E9PP25;E9PS02;E9PP62;E9PIU0;Q6MZQ0-4;Q6MZQ0 E9PJV4 PRR5L Proline-rich protein 5-like 1 0 FMS(0.944)S(0.056)PVLSDLPR 210.41 1.64E-17 93966000 132300 125900 79143 52859 129750 136370 172340 152480 103480 137280 TRUE FALSE FALSE 123026.4532 115923.2255 109789.2891 123058.4233 113475.5451 119546.0559 129218.7092 117763.6326 112449.7297 102904.1945 1.19554362 1.126516038 1.066907814 1.195854299 1.102730027 1.161721896 1.255718582 1.144400704 1.092761382 1 16.65094226 -8.040990245 2.654257996 1.000684432 1.155218395 0.486576833 0.049899385 0.268281992 4.494885151 0.049745745 0.013447464 9.10E-09 8.040990245 0.154533964 FMSS(ph)PVLSDLPR ddPTM_HeLa_A486_30min_R1 1 FMSSPVLSDLPR 12 0 E9PJV4;E9PLJ6;E9PL62;E9PP25;E9PS02;E9PP62;E9PIU0;Q6MZQ0-4;Q6MZQ0 E9PJV4 PRR5L Proline-rich protein 5-like 1 0 FMS(0.026)S(0.974)PVLSDLPR 256.7 2.78E-33 101280000 83439 95290 68994 39455 96518 96649 116980 104860 76148 104780 TRUE FALSE FALSE 77590.35698 87738.87336 95710.32452 91853.23395 84411.81245 84725.42904 87710.36671 80985.66708 82748.56995 78542.406 0.987878535 1.117089198 1.218581521 1.169473137 1.07472914 1.078722099 1.116726253 1.031107541 1.053552777 1 16.26118417 -7.411663188 0.81788801 1.004910376 1.121348276 0.280330781 0.058597263 0.81120257 1.033105984 0.058092359 0.024363999 3.88E-08 7.411663188 0.1164379 FNADEFEDMVAEKR ddPTM_HeLa_A485_30min_R1 2 FNADEFEDMVAEKR 14 1 X1WI28;P27635;F8W7C6;A0A087WV22 X1WI28 RPL10 60S ribosomal protein L10 0 0 ; ; 93.51 0.0028061 65409000 135799 150541 140070 170733 274487 195438 274957 316426 194103 256043 FALSE FALSE TRUE 166007.019 168145.4604 191887.7218 180059.7115 247158.1105 205670.8315 216210.1908 238822.0274 233057.6917 192216.1922 0.863647423 0.874772611 0.998291141 0.936756209 1.285833975 1.069997429 1.124828186 1.242465708 1.212476894 1 17.55237035 -5.685854287 8.2461407 1.161944124 0.919339756 0.652835796 0.084833218 0.161915323 15.6533101 0.024898872 0.032125655 2.06E-06 5.685854287 -0.242604368 FNADEFEDMVAEKR ddPTM_HeLa_A486_30min_R1 2 FNADEFEDMVAEKR 14 1 X1WI28;P27635;F8W7C6;A0A087WV22 X1WI28 RPL10 60S ribosomal protein L10 0 0 ; ; 89.866 0.0034305 109825000 189942 207522 149742 91531 297855 268985 382240 392700 163164 260313 FALSE FALSE TRUE 176628.0467 191077.2009 207726.1126 213088.7937 260495.2485 235800.3655 286599.5091 303290.7826 177307.1869 195128.9304 0.905186362 0.979235629 1.06455825 1.092041007 1.334990398 1.208433649 1.468769948 1.554309665 0.908666831 1 17.57406817 -5.330506254 1.388243079 1.284562134 0.939579137 0.275407094 0.187113055 0.511687437 1.926079961 0.063090751 0.139483872 4.67E-06 5.330506254 -0.344982997 FNADSGYSIHS(ph)DSESQAETVHGLDGCASLLR ddPTM_HeLa_A485_30min_R1 1 FNADSGYSIHSDSESQAETVHGLDGCASLLR 31 0 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 0 FNADSGYSIHS(0.999)DS(0.001)ESQAETVHGLDGCASLLR 244.03 1.05E-50 351250000 13189 29150 28740 12605 41589 17753 29730 32980 17712 30238 TRUE FALSE FALSE 16122.84755 32558.83893 39372.12197 13293.57923 37448.25313 18682.51963 23377.94263 24891.60329 21266.63594 22700.22309 0.710250621 1.434295989 1.734437667 0.585614475 1.649686569 0.823010398 1.029855193 1.096535624 0.936847002 1 14.47041886 FNADSGYSIHS(ph)DSESQAETVHGLDGCASLLR ddPTM_HeLa_A486_30min_R1 1 FNADSGYSIHSDSESQAETVHGLDGCASLLR 31 0 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 0 FNADSGYSIHS(0.995)DS(0.002)ES(0.002)QAETVHGLDGCASLLR 128.38 1.84E-06 189100000 35273 48345 43855 5201 50466 34225 36811 44751 40034 26941 TRUE FALSE FALSE 32800.54485 44513.96613 60836.83048 12108.19084 44136.0837 30002.66747 27600.49845 34562.17421 43504.17935 20194.79824 1.624207603 2.204229307 3.012500038 0.599569785 2.185517437 1.485663145 1.366713256 1.711439441 2.154226986 1 14.30169611 -5.250842516 24.99567437 1.552446788 2.272703899 0.294570076 0.548895335 975.0479357 2299919.665 0.145360051 0.248438777 5.61E-06 5.250842516 0.720257111 FNAHGDANTIVCNSK ddPTM_HeLa_A485_30min_R1 2 FNAHGDANTIVCNSK 15 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 253.82 6.99E-41 185347000 324810 345190 270190 355530 446830 378100 536960 559420 311200 527170 FALSE FALSE TRUE 397062.8639 385556.9677 370144.5245 374951.7037 402342.0363 397896.7313 422234.1094 422221.3679 373654.9855 395756.2208 1.003301636 0.974228445 0.93528416 0.947430979 1.016641091 1.005408659 1.066904542 1.066872346 0.944154421 1 18.5942525 -5.816738132 7.025902705 1.02228802 0.963655412 0.312510252 0.036933545 0.243466386 24.79909299 0.011792353 0.013488727 1.52E-06 5.816738132 -0.058632608 FNAHGDANTIVCNSK ddPTM_HeLa_A486_30min_R1 2 FNAHGDANTIVCNSK 15 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 205.68 1.96E-16 37593000 128843 137492 97397 46939 165518 153085 168993 170272 132291 178941 FALSE FALSE TRUE 119811.771 126596.6332 135111.7268 109276.3642 144757.189 134198.9292 126709.164 131504.7826 143758.0904 134133.0089 0.89323107 0.943814161 1.007296622 0.814686594 1.079206306 1.000491454 0.94465311 0.98040582 1.071757739 1 17.03330479 -5.777951746 24.99954303 1.007754661 0.92344253 0.397621392 0.058507713 288.150712 436255.3289 0.018189603 0.020682377 1.67E-06 5.777951746 -0.08431213 FNDPSGCAPS(ph)PGAYDVK ddPTM_HeLa_A486_30min_R1 1 FNDPSGCAPSPGAYDVK 17 0 O75330-2;O75330;O75330-3 O75330-2 HMMR Hyaluronan mediated motility receptor 1 0 FNDPSGCAPS(1)PGAYDVK 121.19 4.06E-05 51105000 87286 129610 58517 50608 118340 136080 151600 143510 74703 135450 TRUE FALSE FALSE 81167.70215 119339.2316 81176.34954 117817.9816 103496.6937 119291.8332 113668.0765 110835.9058 81178.31619 101532.4384 0.799426306 1.175380336 0.799511475 1.16039744 1.019346087 1.174913506 1.119524739 1.091630493 0.799530844 1 16.6315812 -4.23955327 24.06161959 1.043313386 0.799425879 0.222326659 0.133390948 5217.690796 5736193.646 0.031949051 1.45524839 5.76E-05 4.23955327 -0.243887507 FNDS(ph)EGDDT(ph)EETEDYR ddPTM_HeLa_A485_30min_R1 2 FNDSEGDDTEETEDYR 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 FNDS(1)EGDDT(1)EETEDYR;FNDS(1)EGDDT(1)EETEDYR ; 272.09 5.37E-58 2247300000 2879800 2756900 2753400 3864300 3511300 2486370 3170900 2490760 2738900 4770000 TRUE FALSE FALSE 3520401.575 3079295.473 3771997.239 4075396.924 3161702.643 2616552.489 2493411.311 1879897.205 3288572.107 3580926.785 0.983097892 0.859915787 1.053357822 1.138084403 0.882928592 0.730691423 0.696303348 0.524975046 0.918357818 1 21.77190159 -6.058175371 4.052116651 0.741645381 1.00281719 0.378684632 0.13780335 0.215955855 7.14275891 0.046054464 0.047630114 8.75E-07 6.058175371 0.261171808 FNDS(ph)EGDDT(ph)EETEDYR ddPTM_HeLa_A486_30min_R1 2 FNDSEGDDTEETEDYR 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 FNDS(1)EGDDT(1)EETEDYR;FNDS(1)EGDDT(1)EETEDYR ; 344.82 3.64E-92 2454700000 1390120 1624850 1070140 621050 1410110 1588000 1727010 1620640 1392390 1801170 TRUE FALSE FALSE 1292679.767 1496090.968 1484526.867 1445835.786 1233240.855 1392088.706 1294893.832 1251655.65 1513083.486 1350145.308 0.957437513 1.108096261 1.099531182 1.070874207 0.913413428 1.031065839 0.959077385 0.92705255 1.120681957 1 20.36468325 -5.709065576 24.99861821 0.98855322 1.065389131 0.192493784 0.06660836 145.9806564 69677.25398 0.019072215 0.0246221 1.95E-06 5.709065576 0.076835911 FNDS(ph)EGDDTEETEDYR ddPTM_HeLa_A485_30min_R1 4 FNDSEGDDTEETEDYR 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR ;;; 372.9 7.45E-119 24205500000 865880 826707 800570 1178360 1077940 668606 1017970 733024 838537 1417020 TRUE FALSE FALSE 1058492.019 923383.1923 1096734.157 1242730.823 970616.5087 703613.1763 800472.3934 553248.7147 1006823.684 1063782.992 0.995026266 0.868018382 1.030975458 1.16821836 0.912419653 0.66142548 0.752477149 0.520076669 0.946455895 1 20.02077245 -6.051865492 5.685148063 0.747096977 1.010410978 0.37206963 0.144469292 0.201770341 14.915334 0.046743891 0.047669673 8.87E-07 6.051865492 0.263314001 FNDS(ph)EGDDTEETEDYR ddPTM_HeLa_A486_30min_R1 4 FNDSEGDDTEETEDYR 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYR;FNDS(0.983)EGDDT(0.017)EETEDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR ;;; 538.94 0 31022800000 1639790 1945020 1375350 731400 1896400 1771400 2093390 2048400 1683180 1838830 TRUE FALSE FALSE 1524849.189 1790889.532 1907922.353 1702736.163 1658535.829 1552862.678 1569601.68 1582024.036 1829079.398 1378374.999 1.106265849 1.299275983 1.384182355 1.235321421 1.203254433 1.126589411 1.138733423 1.147745742 1.326982424 1 20.39453701 -5.836849374 2.801385462 1.157558754 1.270783474 0.20601251 0.098308056 0.428189 6.825234364 0.032256704 0.038651292 1.46E-06 5.836849374 0.11322472 FNDS(ph)EGDDTEETEDYRQFR ddPTM_HeLa_A485_30min_R1 4 FNDSEGDDTEETEDYRQFR 19 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYRQFR;FNDS(0.998)EGDDT(0.002)EETEDYRQFR;FNDS(1)EGDDTEETEDYRQFR;FNDS(1)EGDDTEETEDYRQFR ;;; 332.66 3.04E-102 9679000000 944676 1524272 1407621 794020 2704330 1916840 2803500 3223680 1267825 1188585 TRUE FALSE FALSE 1154815.917 1702522.351 1928358.584 837395.302 2435077.41 2017202.778 2204509.323 2433067.425 1522265.848 892292.6338 1.294212093 1.908031386 2.161127987 0.93847609 2.729012117 2.260696437 2.470612486 2.726759511 1.706016379 1 19.7671574 -5.775102855 24.99999421 2.256867847 1.641049957 0.17415012 0.576909225 358.8224566 656533.434 0.170561108 0.194415701 1.68E-06 5.775102855 -0.61581789 FNDS(ph)EGDDTEETEDYRQFR ddPTM_HeLa_A486_30min_R1 4 FNDSEGDDTEETEDYRQFR 19 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYRQFR;FNDS(1)EGDDTEETEDYRQFR;FNDS(1)EGDDTEETEDYRQFR;FNDS(1)EGDDTEETEDYRQFR ;;; 326.9 4.47E-102 6643280000 806632 745630 814752 458881 1735400 776535 1393370 1518420 653129 1011610 TRUE FALSE FALSE 750091.2623 686543.5633 1130245.794 1068298.159 1517729.95 680734.0069 1044734.088 1172708.913 709742.7476 758296.2715 0.989179679 0.90537642 1.490506859 1.408813677 2.001499951 0.897715092 1.377738659 1.546504918 0.935970246 1 19.5324021 -7.780840707 24.8880462 0.967984616 1.331121885 0.168570822 0.318980325 493.1557844 632602.1854 0.315103907 0.081861162 1.66E-08 7.780840707 0.363137269 FNDS(ph)EGDDTEETEDYRQFRK ddPTM_HeLa_A485_30min_R1 1 FNDSEGDDTEETEDYRQFRK 20 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYRQFRK 174.47 3.03E-14 794070000 29771 91948 44263 14669 99139 133670 212070 465860 47294 25597 TRUE FALSE FALSE 36393.45624 102700.5188 60637.72564 15470.33033 89268.37306 140668.7545 166759.512 351607.1046 56785.47199 19216.13898 1.893900553 5.344492922 3.1555624 0.805069652 4.645489563 7.320344356 8.678096689 18.29748968 2.955092699 1 14.23003087 -2.217051112 20.77388371 5.820365585 4.016203992 0 4.96809005 0 0 1.20369146 0 0.006066649 2.217051112 -1.804161593 FNEEHIPDSPFVVPVAS(ph)PSGDAR ddPTM_HeLa_A485_30min_R1 8 FNEEHIPDSPFVVPVASPSGDAR 23 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 FNEEHIPDSPFVVPVAS(0.947)PS(0.053)GDAR;FNEEHIPDSPFVVPVAS(0.958)PS(0.042)GDAR;FNEEHIPDSPFVVPVAS(0.93)PS(0.07)GDAR;FNEEHIPDSPFVVPVAS(0.942)PS(0.058)GDAR;FNEEHIPDSPFVVPVAS(0.952)PS(0.048)GDAR;FNEEHIPDSPFVVPVAS(0.959)PS(0.041)GDAR;FNEEHIPDSPFVVPVAS(0.86)PS(0.14)GDAR;FNEEHIPDSPFVVPVAS(0.924)PS(0.076)GDAR ;;;;;;; 200.85 7.09E-29 9209390000 5505588 7025822 6486247 6382879 8968660 6551156 8122050 8383400 6569249 8455510 TRUE FALSE FALSE 6730287.057 7847430.766 8885779.681 6731559.517 8075708.72 6894164.398 6386707.666 6327358.005 7887637.018 6347706.969 1.060270597 1.236262292 1.399840875 1.060471057 1.272224562 1.086087375 1.006144061 0.996794281 1.242596272 1 22.5978041 -6.387520129 5.691073336 1.059334611 1.209745153 0.274281047 0.113736918 0.310889921 13.14379682 0.040298289 0.035331204 4.10E-07 6.387520129 0.150410542 FNEEHIPDSPFVVPVAS(ph)PSGDAR ddPTM_HeLa_A486_30min_R1 8 FNEEHIPDSPFVVPVASPSGDAR 23 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 FNEEHIPDSPFVVPVAS(0.782)PS(0.218)GDAR;FNEEHIPDSPFVVPVAS(0.93)PS(0.07)GDAR;FNEEHIPDSPFVVPVAS(0.908)PS(0.092)GDAR;FNEEHIPDSPFVVPVAS(0.932)PS(0.068)GDAR;FNEEHIPDSPFVVPVAS(0.95)PS(0.05)GDAR;FNEEHIPDSPFVVPVAS(0.862)PS(0.138)GDAR;FNEEHIPDSPFVVPVAS(0.958)PS(0.042)GDAR;FNEEHIPDSPFVVPVAS(0.854)PS(0.146)GDAR ;;;;;;; 176.01 3.43E-15 11030260000 5205189 5813171 4883672 2008593 6585831 5513034 6455901 6558512 5155566 5838510 TRUE FALSE FALSE 4840332.131 5352514.159 6774760.588 4676106.013 5759774.666 4832891.918 4840566.286 5065281.989 5602454.612 4376509.094 1.105980138 1.223009948 1.547982751 1.068455683 1.316065965 1.104280104 1.106033641 1.157379519 1.280119495 1 22.06134914 -6.269076947 24.79526851 1.137928212 1.256885103 0.164159836 0.137635776 1063.509478 3452659.699 0.047883411 0.043024704 5.38E-07 6.269076947 0.118956891 FNEEHIPDSPFVVPVAS(ph)PSGDARR ddPTM_HeLa_A485_30min_R1 5 FNEEHIPDSPFVVPVASPSGDARR 24 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 FNEEHIPDSPFVVPVAS(0.971)PS(0.029)GDARR;FNEEHIPDSPFVVPVAS(0.973)PS(0.027)GDARR;FNEEHIPDSPFVVPVAS(0.978)PS(0.022)GDARR;FNEEHIPDSPFVVPVAS(0.964)PS(0.036)GDARR;FNEEHIPDS(0.002)PFVVPVAS(0.846)PS(0.152)GDARR ;;;; 193.23 4.20E-21 1325550000 359598 618732 505457 266323 736441 569176 736106 947391 468258 446569 TRUE FALSE FALSE 439589.3345 691087.3251 692446.5781 280871.5511 663118.3482 598977.1752 578830.9397 715041.8718 562233.0855 335247.5668 1.311237957 2.061423836 2.065478311 0.837803399 1.977996006 1.786671208 1.726577601 2.132877141 1.677068355 1 18.35486734 FNEEHIPDSPFVVPVAS(ph)PSGDARR ddPTM_HeLa_A486_30min_R1 3 FNEEHIPDSPFVVPVASPSGDARR 24 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 FNEEHIPDS(0.005)PFVVPVAS(0.959)PS(0.036)GDARR;FNEEHIPDSPFVVPVAS(0.948)PS(0.052)GDARR;FNEEHIPDSPFVVPVAS(0.985)PS(0.015)GDARR ;; 174.72 8.56E-15 726880000 343450 266715 249555 130916 417999 243507 335661 369972 192024 305307 TRUE FALSE FALSE 319375.9286 245579.532 346189.3793 304779.0641 365569.6677 213465.5821 251675.0675 285737.452 208668.7949 228856.14 1.395531396 1.073073819 1.512694304 1.331749562 1.597377583 0.932750077 1.09970861 1.248546148 0.911790241 1 17.80408147 -6.273375404 24.96117562 1.057914998 1.369377655 0.548258971 0.155202881 646.7548942 1352520.659 0.054430378 0.048369669 5.33E-07 6.273375404 0.311462657 FNEEHIPDSPFVVPVASPSGDAR ddPTM_HeLa_A485_30min_R1 2 FNEEHIPDSPFVVPVASPSGDAR 23 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 ; ; 140.17 1.75E-10 168980000 130062 171345 157520 148213 219760 178590 222658 246430 184632 211398 FALSE FALSE TRUE 158993.8432 191382.3072 215793.203 156309.5009 197879.9228 187940.6962 175085.2994 185992.6561 221685.9489 158700.3691 1.001849234 1.205934859 1.35975237 0.984934703 1.246877521 1.18424864 1.103244437 1.171973683 1.396883638 1 17.27594596 -7.551463561 24.99702096 1.227103978 1.161338859 0.00547976 0.13766994 855.0980399 747755.9935 0.088007065 0.033264594 2.81E-08 7.551463561 -0.065765119 FNEEHIPDSPFVVPVASPSGDAR ddPTM_HeLa_A486_30min_R1 1 FNEEHIPDSPFVVPVASPSGDAR 23 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 103.92 1.29E-05 0 58502 64888 44927 18093 71042 66683 65123 69616 40771 64801 FALSE FALSE TRUE 54401.3119 59746.03856 62323.93759 42121.41837 62131.24992 58456.32944 48828.5366 53765.95651 44305.06311 48574.40782 1.119958314 1.229990055 1.283061192 0.867152483 1.279094336 1.203438849 1.005231742 1.10687827 0.912107118 1 15.56790879 -7.130311176 1.484412764 0.981265543 1.161699792 0.269811397 0.121486902 0.607787016 2.483827224 0.091113783 0.038871591 7.41E-08 7.130311176 0.180434248 FNFS(ph)GSK ddPTM_HeLa_A485_30min_R1 1 FNFSGSK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FNFS(0.913)GS(0.087)K 82.417 0.010689 233810000 400700 329200 270610 515400 535330 354550 622180 683330 504720 913370 TRUE FALSE FALSE 489834.3326 367697.0763 370719.9 543554.9969 482030.6655 373113.6898 489246.1603 515742.2461 606012.6744 685683.6683 0.714373632 0.536248847 0.540657328 0.792719766 0.702992776 0.544148427 0.713515842 0.752157693 0.883807946 1 19.38718363 -7.747558311 1.252253474 0.999407966 0.639062218 0.685092638 0.081074958 0.254092606 0.807889534 0.079761368 0.025648756 1.79E-08 7.747558311 -0.360345748 FNFS(ph)GSK ddPTM_HeLa_A486_30min_R1 1 FNFSGSK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FNFS(0.998)GS(0.002)K 83.869 0.0094666 436270000 998870 759700 319150 365940 666900 899530 1155000 1311200 573280 1129300 TRUE FALSE FALSE 928854.3712 699498.6052 442733.4271 851926.8136 583251.1834 788555.1344 866006.7837 1012668.383 622972.372 846515.9295 1.097267445 0.826326571 0.523006611 1.006391946 0.689002018 0.931530178 1.023024793 1.196278 0.735925161 1 19.69117769 -6.49993703 8.339835242 1.001454344 0.819969193 0.149043426 0.180544128 0.426085929 137.9314527 0.064219227 0.054663931 3.16E-07 6.49993703 -0.181485151 FNFS(ph)KPK ddPTM_HeLa_A486_30min_R1 2 FNFSKPK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FNFS(1)KPK;FNFS(1)KPK ; 90.108 0.0032973 636350000 2313000 1514090 363260 1151620 807860 2124810 2866100 4013000 1019890 2831800 TRUE FALSE FALSE 2150870.644 1394107.994 503924.0004 2681029.56 706530.6658 1862672.546 2148971.465 3099327.503 1108294.886 2122698.848 1.013271688 0.656762025 0.237397783 1.263028697 0.332845456 0.877502029 1.012376988 1.460088183 0.522115932 1 21.01746828 -6.515230281 12.49072261 1.023918758 0.693873251 0.139711781 0.347677576 1.011943507 1644.164299 0.123318517 0.101154324 3.05E-07 6.515230281 -0.330045507 FNGEDIDTIS(ph)PTLGFNIK ddPTM_HeLa_A485_30min_R1 2 FNGEDIDTISPTLGFNIK 18 0 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 1 0 FNGEDIDT(0.209)IS(0.783)PT(0.008)LGFNIK;FNGEDIDT(0.415)IS(0.546)PT(0.039)LGFNIK ; 124.26 1.31E-05 110703000 116920 105500 86720 141380 133330 116740 180320 169160 103670 196560 TRUE FALSE FALSE 142928.4506 117837.3073 118801.3367 149103.2314 120055.197 122852.3259 141793.1589 127673.2448 124475.6181 147561.2094 0.968604494 0.79856561 0.805098692 1.01045005 0.813595914 0.832551633 0.960910794 0.865222271 0.843552439 1 17.17095399 -10.27037475 4.350527735 1.000083055 0.875942666 0.206066503 0.071998655 5.66E-05 9.50E-06 0.068065437 0.01649726 5.37E-11 10.27037475 -0.124140389 FNGGHS(ph)PTHS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 2 0 FNGGHS(0.615)PT(0.386)HS(0.999)PEK;FNGGHS(0.965)PT(0.126)HS(0.908)PEK ; 99.409 0.00081256 3151410000 3143320 3266020 2579960 4073740 4523000 3462100 5542490 5354200 3008290 5633420 TRUE FALSE FALSE 3842540.69 3647952.628 3534394.565 4296278.101 4072674.239 3643370.203 4358291.734 4041074.055 3612026.209 4229112.069 0.908592779 0.862581215 0.835729701 1.015881828 0.963009297 0.861497672 1.03054534 0.955537235 0.854086189 1 22.01192336 -5.247892752 24.97604074 0.952177595 0.86832923 0.315330859 0.057599503 985.2237721 1816462.842 0.015613423 0.026854235 5.65E-06 5.247892752 -0.083848365 FNGGHS(ph)PTHS(ph)PEK ddPTM_HeLa_A486_30min_R1 6 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 2 0 FNGGHS(0.68)PT(0.32)HS(1)PEK;FNGGHS(0.998)PT(0.002)HS(1)PEK;FNGGHS(0.999)PT(0.017)HS(0.984)PEK;FNGGHS(0.996)PT(0.119)HS(0.885)PEK;FNGGHS(0.787)PT(0.214)HS(0.999)PEK;FNGGHS(0.894)PT(0.108)HS(0.998)PEK ;;;;; 153.75 3.70E-08 9185510000 12366640 11591870 6534430 6648980 10821440 12781870 16767710 14989460 9092890 19408230 TRUE FALSE FALSE 11499802.4 10673288 9064736.294 15479161.46 9464114.089 11204972.84 12572251.61 11576687.18 9881069.026 14548282.88 0.790457712 0.733645894 0.623079464 1.06398546 0.650531349 0.77019212 0.864174261 0.795742513 0.679191428 1 23.79434555 -10.4000055 3.510431092 1.001729414 0.776892696 0.243881355 0.119023558 58197520.73 90806635.21 1034276.388 0.028694959 3.98E-11 10.4000055 -0.224836718 FNGGHS(ph)PTHSPEK ddPTM_HeLa_A485_30min_R1 4 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 FNGGHS(0.983)PT(0.017)HSPEK;FNGGHS(0.986)PT(0.014)HSPEK;FNGGHS(0.959)PT(0.041)HSPEK;FNGGHS(0.574)PT(0.425)HSPEK ;;; 169.64 3.51E-12 6801720000 2986900 3154640 2421280 3108250 3414210 3252250 5058220 4864970 2781790 4509470 TRUE FALSE FALSE 3651325.6 3523547.706 3317012.23 3278045.827 3074279.264 3422532.781 3977489.975 3671828.48 3340069.737 3385342.12 1.078569158 1.040824703 0.979815957 0.968305628 0.908114795 1.010985791 1.174915218 1.084625527 0.98662694 1 21.69087021 -6.542959044 24.98753783 1.072073557 0.991746857 0.188140658 0.063923851 354.3923848 440995.3666 0.025617769 0.019845636 2.86E-07 6.542959044 -0.0803267 FNGGHS(ph)PTHSPEK ddPTM_HeLa_A486_30min_R1 3 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 FNGGHS(0.498)PT(0.498)HS(0.003)PEK;FNGGHS(0.784)PT(0.216)HS(0.001)PEK;FNGGHS(0.702)PT(0.298)HSPEK ;; 163.44 5.98E-12 2750810000 1684770 1603860 943730 452390 1653570 1607190 1998180 1904490 1432850 1960840 TRUE FALSE FALSE 1566676.323 1476764.292 1309167.53 1053186.783 1446163.832 1408911.239 1498214.229 1470879.202 1557050.592 1469832.901 1.065887369 1.004715768 0.890691404 0.716535044 0.983896762 0.958551981 1.019309221 1.00071185 1.059338507 1 20.48722072 -6.517600778 2.077424807 1.020801089 0.922138297 0.181345237 0.087496131 0.598953042 5.189104351 0.042413941 0.032696071 3.04E-07 6.517600778 -0.098662792 FNGGHSPT(ph)HS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 2 0 FNGGHS(0.223)PT(0.777)HS(1)PEK 119.62 0.00017524 2306900000 2092000 1830100 1208800 2975400 2481600 2029000 3552000 3271200 1475100 3768700 TRUE FALSE FALSE 2557358.183 2044114.275 1655985.422 3137938.568 2234523.191 2135235.303 2793086.183 2468933.071 1771139.04 2829232.448 0.903905292 0.72249782 0.585312608 1.109113028 0.789798375 0.754704798 0.987224003 0.872651193 0.626013971 1 21.43197928 -11.43995987 2.320001053 2.890123976 0.819851922 0.116359238 0.151243238 17827134.59 1709023.046 177317597.6 0.039765015 3.63E-12 11.43995987 -2.070272054 FNGGHSPT(ph)HSPEK ddPTM_HeLa_A485_30min_R1 3 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 FNGGHS(0.062)PT(0.938)HSPEK;FNGGHS(0.348)PT(0.652)HSPEK;FNGGHS(0.329)PT(0.669)HS(0.002)PEK ;; 174.4 2.79E-12 6187100000 2464520 2689210 2224230 2530570 3245990 3024450 4211110 4347790 2591090 3843660 TRUE FALSE FALSE 3012743.972 3003689.716 3047065.235 2668808.631 2922807.838 3182805.525 3311371.947 3281487.685 3111097.996 2885506.299 1.044095441 1.040957602 1.055989805 0.924901336 1.012927208 1.10303191 1.147587842 1.137231163 1.078180975 1 21.46039305 -6.265021604 9.809514041 1.105218277 1.01433584 0.354550637 0.05094723 0.131558531 242.7597763 0.017702326 0.016459534 5.43E-07 6.265021604 -0.090882437 FNGGHSPT(ph)HSPEK ddPTM_HeLa_A486_30min_R1 3 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 FNGGHS(0.258)PT(0.741)HSPEK;FNGGHS(0.078)PT(0.921)HS(0.001)PEK;FNGGHS(0.227)PT(0.769)HS(0.003)PEK ;; 138.98 5.98E-06 7264160000 4743910 4131790 2378460 1081840 4428310 4358990 5202300 4858490 3620530 5002390 TRUE FALSE FALSE 4411386.407 3804371.913 3299463.409 2518578.193 3872870.067 3821222.133 3900629.516 3752317.887 3934360.456 3749758.984 1.17644532 1.014564384 0.879913462 0.67166402 1.032831732 1.019058065 1.040234728 1.000682418 1.049230223 1 21.83836644 FNGS(ph)TEALDKLDADAVSPTVSQLSAVFEK ddPTM_HeLa_A485_30min_R1 2 FNGSTEALDKLDADAVSPTVSQLSAVFEK 29 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 0 FNGS(0.964)T(0.036)EALDKLDADAVSPTVSQLSAVFEK;FNGS(0.974)T(0.026)EALDKLDADAVSPTVSQLSAVFEK ; 303.94 5.52E-93 329880000 106015 81375 49046 141420 109510 101283 166038 167967 76877 191645 TRUE FALSE FALSE 129597.671 90891.09838 67190.15637 149145.4165 98606.79989 106586.0213 130562.6249 126772.8299 92305.50874 143871.4285 0.900788102 0.631752248 0.467015286 1.036657647 0.685381392 0.74084217 0.907495159 0.881153619 0.64158332 1 17.13442059 -13.99999993 0.130352564 1.766932924 0.670183634 0.150945716 0.160678156 268.7737863 2.204940779 54.08081439 1.220167307 1.00E-14 13.99999993 -1.09674929 FNGS(ph)TEALDKLDADAVSPTVSQLSAVFEK ddPTM_HeLa_A486_30min_R1 1 FNGSTEALDKLDADAVSPTVSQLSAVFEK 29 1 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 0 FNGS(0.96)T(0.04)EALDKLDADAVSPTVSQLSAVFEK 231.23 1.88E-39 153570000 158240 141860 58206 82919 123720 180720 220130 199810 127150 242220 TRUE FALSE FALSE 147148.1932 130618.497 80744.92201 193039.6225 108201.884 158424.6038 165051.1457 154317.6248 138171.4644 181566.5354 0.810436752 0.719397419 0.444712578 1.063189437 0.595935169 0.872542969 0.909039462 0.849923277 0.760996315 1 17.4701388 -6.013871484 0.860000462 0.876928561 0.6985351 0.158597008 0.160154917 1.189441619 1.936475181 0.090423782 0.110593949 9.69E-07 6.013871484 -0.178393461 FNGTHIPGS(ph)PFK ddPTM_HeLa_A485_30min_R1 3 FNGTHIPGSPFK 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 FNGTHIPGS(1)PFK;FNGTHIPGS(1)PFK;FNGTHIPGS(1)PFK ;; 114.59 0.00021568 1278010000 1284464 1120065 713920 1480680 1648820 1167455 1989980 1923040 1071246 2169940 TRUE FALSE FALSE 1570188.585 1251046.858 978028.7167 1561565.799 1484657.691 1228581.139 1564804.516 1451411.425 1286235.246 1629013.893 0.963889008 0.767978017 0.600380832 0.958595753 0.911384303 0.754187023 0.960583899 0.890975474 0.789579053 1 20.63556748 -5.323496027 24.99998752 0.888043606 0.776466965 0.196840006 0.108233888 377.2401761 151973.0472 0.030533137 0.045287969 4.75E-06 5.323496027 -0.111576641 FNGTHIPGS(ph)PFK ddPTM_HeLa_A486_30min_R1 2 FNGTHIPGSPFK 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 FNGTHIPGS(1)PFK;FNGTHIPGS(1)PFK ; 110.57 0.0003025 1269390000 1424500 1401650 827540 868830 1396300 1685270 2296800 2072170 1019440 1905000 TRUE FALSE FALSE 1324649.906 1290578.149 1147985.65 2022680.148 1221163.034 1477358.522 1722116.347 1600382.126 1107805.88 1427975.601 0.927641835 0.903781653 0.803925256 1.416466883 0.855170798 1.034582469 1.205984434 1.120734924 0.775787681 1 20.4455399 FNHFSLTLNTNHGHILVDYSK ddPTM_HeLa_A485_30min_R1 1 FNHFSLTLNTNHGHILVDYSK 21 0 P06744-2;P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41;K7ELR7;A0A2R8YF08;K7ENA0;K7EIL4;A0A0J9YXM3;K7ERK8;A0A0J9YXH9;A0A0J9YYI8 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 133.21 4.07E-09 14276000 17878 22647 18492 13248 24859 14325 24106 24018 12652 22600 FALSE FALSE TRUE 21854.89942 25295.36965 25332.96032 13971.70469 22383.95067 15075.03485 18955.55617 18127.54784 15191.14035 16966.23592 1.288140724 1.490924078 1.493139694 0.823500555 1.319323318 0.888531488 1.117251714 1.068448413 0.895374815 1 14.05037891 -5.248262746 24.93032125 1.030451908 1.430753791 0.632246984 0.142274048 464.1452697 878165.9267 0.03643382 0.062628853 5.65E-06 5.248262746 0.400301882 FNIDEVLQEWEAEHGKEETNGPS(ph)NQKPVKSPDNSIK ddPTM_HeLa_A486_30min_R1 1 FNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIK 36 3 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 FNIDEVLQEWEAEHGKEET(0.092)NGPS(0.452)NQKPVKS(0.452)PDNS(0.004)IK 75.248 0.00026008 251660000 134160 119660 34338 155010 102380 245700 343160 292360 110910 371210 TRUE FALSE FALSE 124756.0768 110177.7058 47634.5932 360871.1138 89538.54574 215388.0321 257297.7384 225796.0102 120523.7681 278256.5998 0.448349031 0.395957206 0.171189446 1.296900465 0.321784086 0.774062618 0.924677936 0.811466863 0.433138938 1 18.08605638 -5.220789731 24.99999542 0.771587281 0.344244386 0.377682428 0.267112379 563.3627204 346473.7629 0.069536936 0.120439765 6.01E-06 5.220789731 -0.427342895 FNIDEVLQEWEAEHGKEETNGPSNQKPVKS(ph)PDNSIK ddPTM_HeLa_A486_30min_R1 1 FNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIK 36 3 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 FNIDEVLQEWEAEHGKEET(0.024)NGPS(0.136)NQKPVKS(0.836)PDNS(0.004)IK 67.333 0.0011184 217910000 48394 38089 10059 43677 27543 76305 115750 91459 33509 111430 TRUE FALSE FALSE 45001.83051 35070.68892 13954.11419 101682.2633 24088.30011 66891.26491 86788.12572 70635.78224 36413.5871 83527.20271 0.538768557 0.419871464 0.167060715 1.217355065 0.288388685 0.800832097 1.039040252 0.845662011 0.43594884 1 16.3499585 -5.240399841 24.92042559 0.785650209 0.379697384 0.340710653 0.272405133 945.2428517 1119597.9 0.072492381 0.125397515 5.75E-06 5.240399841 -0.405952825 FNISSHNQS(ph)PK ddPTM_HeLa_A486_30min_R1 2 FNISSHNQSPK 11 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 FNISSHNQS(1)PK;FNISSHNQS(1)PK ; 128.22 0.00013134 258810000 1230260 1236990 680710 253120 1103700 1159910 1499640 1391480 950450 1142400 TRUE FALSE FALSE 1144025.127 1138966.407 944299.142 589276.152 965263.6544 1016812.097 1124414.21 1074670.38 1032835.771 856335.6042 1.335954177 1.330046773 1.102720869 0.688136928 1.127202524 1.187399067 1.313053206 1.254964029 1.206110976 1 19.70781678 -6.290218402 4.606219937 1.217456157 1.103647121 0.031210044 0.183484491 0.650643049 35.08242669 0.071569172 0.064962545 5.13E-07 6.290218402 -0.113809036 FNIT(ph)PNKLVELNK ddPTM_HeLa_A485_30min_R1 1 FNITPNKLVELNK 13 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3;Q5TF96 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 FNIT(1)PNKLVELNK 123.36 4.05E-05 199720000 173530 102890 74824 281130 183170 142100 266130 173300 122570 416540 TRUE FALSE FALSE 212131.1498 114922.0905 102504.5113 296487.42 164932.9517 149540.1363 209269.1514 130797.9033 147168.6747 312704.2439 0.678376306 0.367510492 0.327800192 0.948140058 0.52744072 0.478215884 0.669223893 0.418279911 0.470632163 1 18.25443927 -10.55939363 3.776335768 1.009952903 0.540984412 0.384715342 0.173426493 41519939.88 58442746.68 3003168.18 0.042176328 2.76E-11 10.55939363 -0.468968491 FNIT(ph)PNKLVELNK ddPTM_HeLa_A486_30min_R1 1 FNITPNKLVELNK 13 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3;Q5TF96 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 FNIT(1)PNKLVELNK 124.92 3.71E-05 488730000 15591 13887 7801.1 10618 13334 23927 30601 29189 11265 22992 TRUE FALSE FALSE 14498.15141 12786.54354 10821.89484 24719.2406 11661.52539 20975.13001 22944.30614 22543.30189 12241.45927 17234.65355 0.841220937 0.74190894 0.627914847 1.434275458 0.676632423 1.217032298 1.331289084 1.308021761 0.710281714 1 14.07302468 -5.237914118 24.99640924 1.106898938 0.737504283 0.316024587 0.242230149 936.460368 995020.5144 0.064726532 0.112024802 5.78E-06 5.237914118 -0.369394655 FNLILR ddPTM_HeLa_A486_30min_R1 1 FNLILR 6 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 121.87 0.01983 49311000 38754 68121 51238 22605 68885 66830 64411 65627 73003 71271 FALSE FALSE TRUE 36037.54473 62722.84387 71078.7258 52625.58239 60244.80097 58585.19408 48294.68653 50685.16473 79330.95882 53424.2777 0.67455371 1.174051322 1.330457404 0.985049956 1.127667112 1.096602455 0.903983893 0.948729059 1.484923376 1 15.70520788 -4.256259614 24.46409228 1.110840116 0.674553462 0.377451771 0.170243872 452.4391366 2136781.862 0.042115852 0.343304465 5.54E-05 4.256259614 -0.436286654 FNSVAGHFFFPLLQR ddPTM_HeLa_A486_30min_R1 1 FNSVAGHFFFPLLQR 15 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 0 0 128.71 2.08E-05 15297000 21055 22240 20199 4037.3 23222 17544 24606 20024 21992 19872 FALSE FALSE TRUE 19579.15323 20477.6214 28020.59375 9399.038434 20309.28022 15379.59965 18449.31854 15464.97232 23898.28427 14895.92185 1.314396881 1.374713267 1.881091618 0.630980649 1.363412108 1.032470484 1.23854829 1.038201762 1.604350808 1 13.86262979 -5.247703396 24.99929219 1.141521849 1.508531792 0.295924516 0.277579694 1050.431182 1911766.518 0.072033164 0.123914639 5.65E-06 5.247703396 0.367009943 FNYSGS(ph)GGR ddPTM_HeLa_A485_30min_R1 3 FNYSGSGGR 9 0 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 FNYS(0.004)GS(0.996)GGR;FNYS(0.001)GS(0.999)GGR;FNYSGS(1)GGR ;; 110.93 0.00089696 1085730000 887120 884480 868280 1131490 1211080 984770 1496430 1406310 885000 1618660 TRUE FALSE FALSE 1084456.783 987912.242 1189492.904 1193300.434 1090500.623 1036331.034 1176705.506 1061410.267 1062611.382 1215157.851 0.892441079 0.812990873 0.978879331 0.982012693 0.897414786 0.852836554 0.96835609 0.873475217 0.87446366 1 20.2127123 FNYSGS(ph)GGR ddPTM_HeLa_A486_30min_R1 3 FNYSGSGGR 9 0 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 FNYSGS(1)GGR;FNYSGS(1)GGR;FNYSGS(1)GGR ;; 141.44 0.00012265 984690000 962460 1021990 772150 338830 1051360 1004810 1118070 1148830 835270 1006320 TRUE FALSE FALSE 894996.5241 941003.7904 1071147.159 788813.3635 919488.6253 880846.7584 838317.0603 887266.4878 907671.8761 754330.922 1.186477311 1.247468138 1.419996354 1.045712618 1.218945954 1.167719276 1.111338586 1.176229771 1.203280748 1 19.52483804 -13.99999983 0.082782379 0.360738538 1.382324384 0.339803686 0.088826201 279.6487229 1.627775192 32.4048112 2.787125967 1.00E-14 13.99999983 1.021585846 FPAPS(ph)VRGSR ddPTM_HeLa_A485_30min_R1 1 FPAPSVRGSR 10 1 H3BNC9;H3BNX1;A0A0J9YXP0;A0A087X171;A0A087WVR7;A0A087WXG7;A0A024R214;Q9BZB8-4;Q9BZB8-2;Q9BZB8-3;Q9BZB8 H3BNC9 CPEB1 Cytoplasmic polyadenylation element-binding protein 1 1 0 FPAPS(0.998)VRGS(0.002)R 42.001 0.034505 485790000 86163 291180 368730 23450 270540 161730 127520 158560 226770 37741 TRUE FALSE FALSE 105329.6621 325230.9681 505138.5711 24731.01412 243604.0877 170197.9327 100274.3103 119672.9114 272280.6589 28332.86327 3.717579162 11.47893049 17.82871594 0.872873803 8.597933973 6.007085521 3.539152019 4.223819889 9.610065045 1 14.79018878 -5.277227119 24.99431697 5.121699487 11.05546169 0.316844521 4.138429359 966.5399322 1530172.859 1.155371432 1.720052625 5.28E-06 5.277227119 5.933762198 FPAS(ph)PGPQQALMPPNLWSLR ddPTM_HeLa_A485_30min_R1 1 FPASPGPQQALMPPNLWSLR 20 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 FPAS(1)PGPQQALMPPNLWSLR 111.57 2.47E-05 25742000 11083 5719.8 10495 12442 9742.5 7141.4 12417 8635.7 7270.9 15619 TRUE FALSE FALSE 13548.37511 6388.680854 14377.53723 13121.67496 8772.502492 7515.312661 9764.006512 6517.781035 8730.102937 11725.47075 1.155465346 0.544854957 1.226179959 1.11907447 0.748157808 0.640939099 0.832717656 0.555865191 0.744541787 1 13.51735822 -5.829385041 8.468654308 0.728802361 0.993064514 0.268820214 0.204934544 0.367028095 41.19301067 0.0626195 0.071194124 1.48E-06 5.829385041 0.264262153 FPEAEALS(ph)PEQAAHYLR ddPTM_HeLa_A485_30min_R1 1 FPEAEALSPEQAAHYLR 17 0 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 FPEAEALS(1)PEQAAHYLR 152.13 2.87E-08 43660000 28144 27988 32772 35628 36762 26744 34861 28800 32905 47927 TRUE FALSE FALSE 34404.5357 31260.95314 44895.72656 37574.26743 33101.8462 28144.27449 27412.66256 21736.75484 39508.73168 35979.68093 0.956221256 0.868850205 1.247807801 1.044319084 0.920015001 0.782226906 0.761892875 0.604139733 1.098084548 1 15.13489477 -5.975199741 3.556732159 0.820259017 1.032243918 0.219050433 0.155092197 0.312800941 8.443418797 0.05141419 0.056674519 1.06E-06 5.975199741 0.211984902 FPEAEALS(ph)PEQAAHYLR ddPTM_HeLa_A486_30min_R1 2 FPEAEALSPEQAAHYLR 17 0 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 FPEAEALS(1)PEQAAHYLR;FPEAEALS(1)PEQAAHYLR ; 200.1 3.72E-25 66400000 73167 92610 68423 24634.4 81686 77893 78913 74535 77266 79773 TRUE FALSE FALSE 68038.37113 85271.24632 94918.21803 57350.12815 71440.18019 68283.35362 59168.13274 57565.00759 83963.47909 59797.32156 1.137816366 1.426004444 1.587332268 0.9590752 1.194705353 1.141913247 0.989477977 0.962668663 1.404134448 1 15.86779324 -5.269231306 24.99530209 1.093528747 1.387946372 0.398464664 0.163584291 568.6144604 1824027.579 0.04544673 0.068826496 5.38E-06 5.269231306 0.294417625 FPGLALRPSS(ph)R ddPTM_HeLa_A485_30min_R1 1 FPGLALRPSSR 11 1 B5MCL8;B5MBZ3;A0A087WVS7;B4DF95;Q15735-3;Q15735-2;Q15735 B5MCL8 INPP5J "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A" 1 0 FPGLALRPS(0.322)S(0.678)R 53.448 0.020848 468020000 158470 194860 167080 159210 190210 201940 225490 283590 153650 223700 TRUE FALSE FALSE 193721.1048 217647.1819 228889.8448 167907.2392 171272.0245 212513.2661 177312.2194 214039.1078 184486.1456 167935.7069 1.153543272 1.296014921 1.362961153 0.999830484 1.019866636 1.265444199 1.055833942 1.274530068 1.098552232 1 17.35754949 -8.859306925 0.022474079 1.35E-05 2.180574321 0.181833947 0.117570731 1098.725754 8.185633851 425.8393394 367.326471 1.38E-09 8.859306925 2.180560838 FPGQLNADLRK ddPTM_HeLa_A485_30min_R1 1 FPGQLNADLRK 11 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;M0R2D3;Q3ZCM7;A0A075B736;Q5SQY0;A0A0B4J269;Q13509;Q13509-2;G3V2A3;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB3;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 121.68 0.0011597 51602000 37920 46021 36779 36108 57177 62799 78735 81445 39340 54179 FALSE FALSE TRUE 46355.17318 51402.75562 50385.0826 38080.48861 51484.25712 66087.05853 61912.62404 61470.48605 47235.17715 40673.17239 1.139698982 1.263800009 1.238779265 0.936255678 1.265803823 1.624831668 1.522198058 1.511327552 1.161334963 1 15.3117899 -6.004212658 24.998251 1.41017989 1.152515025 0.207782426 0.191254769 235.7030564 1398692.331 0.059070033 0.06542521 9.90E-07 6.004212658 -0.257664865 FPGQLNADLRK ddPTM_HeLa_A486_30min_R1 1 FPGQLNADLRK 11 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;M0R2D3;Q3ZCM7;A0A075B736;Q5SQY0;A0A0B4J269;Q13509;Q13509-2;G3V2A3;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB1;TUBB4B;TUBB4A;TUBB8;TUBB3;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 95.401 0.0079447 41643000 34516 35385 27202 14652 41140 36854 44775 46872 30063 45552 FALSE FALSE TRUE 32096.60664 32580.96373 37735.34289 34110.59647 35979.83758 32307.32818 33571.82142 36200.26881 32668.88505 34145.48271 0.939995692 0.954180792 1.105134264 0.998978306 1.053721744 0.946166978 0.983199497 1.060177392 0.956755695 1 15.05940711 -4.552816187 24.99998983 1.013798701 0.943541694 0.248578669 0.046123644 226.5500302 189185.3933 0.01148514 0.030387549 2.80E-05 4.552816187 -0.070257007 FPLDYYSIPFPT(ph)PTTPLTGR ddPTM_HeLa_A485_30min_R1 1 FPLDYYSIPFPTPTTPLTGR 20 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;H0Y5H6;H7C2T8 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 FPLDYYSIPFPT(0.481)PT(0.259)T(0.259)PLTGR 142.91 1.19E-08 74092000 71826 68573 73792 74175 81206 87969 97114 95680 55143 91537 TRUE FALSE FALSE 87803.4459 76592.01584 101090.7315 78226.99243 73120.84551 92574.92081 76364.80055 72214.32998 66209.6943 68718.51051 1.277726267 1.114576193 1.47108444 1.138368568 1.064063306 1.347161342 1.111269729 1.050871584 0.963491406 1 16.06841115 -7.140976389 2.478447814 0.995763444 1.228653994 0.451400047 0.113668908 0.289149128 3.421133988 0.067268375 0.032967336 7.23E-08 7.140976389 0.232890551 FPLDYYSIPFPTPTT(ph)PLTGR ddPTM_HeLa_A485_30min_R1 1 FPLDYYSIPFPTPTTPLTGR 20 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;H0Y5H6;H7C2T8 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 FPLDYYSIPFPTPT(0.166)T(0.824)PLT(0.01)GR 197.15 1.80E-25 85729000 111850 108610 127870 122000 129720 141850 156510 153240 95203 142460 TRUE FALSE FALSE 136730.6466 121310.9947 175174.4341 128664.5511 116804.6213 149277.0467 123070.3599 115657.6497 114309.3688 106947.3438 1.278485671 1.134305822 1.637950303 1.203064485 1.092169447 1.395799478 1.150756583 1.081444809 1.068837849 1 16.70654113 -7.224538288 0.901674765 1.000014146 1.298894242 0.35099348 0.145400982 0.688992704 1.01244036 0.132234882 0.05668898 5.96E-08 7.224538288 0.298880096 FPLDYYSIPFPTPTT(ph)PLTGR ddPTM_HeLa_A486_30min_R1 2 FPLDYYSIPFPTPTTPLTGR 20 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;H0Y5H6;H7C2T8 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 FPLDYYSIPFPT(0.01)PT(0.124)T(0.859)PLT(0.007)GR;FPLDYYSIPFPTPT(0.171)T(0.828)PLT(0.001)GR ; 215.79 1.59E-34 196160000 259051 330680 319220 113985 393260 296590 361270 339850 286240 371790 TRUE FALSE FALSE 240892.8626 304475.7125 442830.533 265362.8405 343933.6638 259999.7413 270876.4249 262473.5739 311051.5137 278691.3641 0.864371465 1.092519366 1.588963958 0.952174609 1.234102337 0.932930743 0.971958445 0.941807346 1.116114648 1 18.08830877 -6.266019867 24.93211488 0.987637456 1.157225175 0.144474835 0.186092084 735.9665377 4005936.782 0.065333205 0.059580044 5.42E-07 6.266019867 0.169587719 FPLGDGQSLLLADALHTHSPLFLEGS(ph)SRDSPPLLDAPASPPQASR ddPTM_HeLa_A485_30min_R1 1 FPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASR 45 1 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 0 FPLGDGQS(0.001)LLLADALHT(0.001)HS(0.001)PLFLEGS(0.332)S(0.332)RDS(0.332)PPLLDAPAS(0.001)PPQASR 51.148 0.0068843 71104000 1839.5 2061.3 1596.4 2395.1 3873.3 1593.5 3228.6 3739.9 3072.3 4262.1 TRUE FALSE FALSE 2248.690429 2302.351104 2186.974792 2525.938248 3487.660652 1676.933196 2538.783235 2822.683661 3688.882429 3199.636908 0.702795503 0.719566366 0.683507177 0.789445278 1.090017634 0.524101092 0.793459792 0.882188743 1.152906575 1 11.64369248 -7.540498545 3.276337494 1.073892904 0.759926026 0.454085979 0.138178251 0.228794454 4.987391707 0.105963815 0.037166356 2.88E-08 7.540498545 -0.313966878 FPLGDGQSLLLADALHTHSPLFLEGSSRDS(ph)PPLLDAPAS(ph)PPQASR ddPTM_HeLa_A486_30min_R1 1 FPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASR 45 1 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 2 0 FPLGDGQSLLLADALHT(0.002)HS(0.01)PLFLEGS(0.274)S(0.303)RDS(0.411)PPLLDAPAS(1)PPQASR 122.57 2.12E-08 44948000 6224 8310.5 7508.2 2627.6 9232.7 7982.1 6387 9869.2 7616.8 6570.4 TRUE FALSE FALSE 5787.729741 7651.945714 10415.57612 6117.185592 8074.648674 6997.349658 4788.905045 7622.198603 8277.030357 4925.129074 1.175142753 1.553653843 2.114782366 1.242035589 1.639479606 1.420744422 0.972341024 1.547613979 1.680571257 1 12.26594582 -6.516808747 24.99202405 1.324448468 1.557298935 0.118594068 0.311265449 673.3266998 2772313.515 0.118000663 0.094579639 3.04E-07 6.516808747 0.232850467 FPLGDGQSLLLADALHTHSPLFLEGSSRDS(ph)PPLLDAPASPPQASR ddPTM_HeLa_A486_30min_R1 1 FPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASR 45 1 Q9BZ71;Q9BZ71-3;Q9BZ71-2 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 0 FPLGDGQS(0.001)LLLADALHT(0.002)HS(0.002)PLFLEGS(0.271)S(0.271)RDS(0.451)PPLLDAPASPPQASR 52.381 0.0064031 67951000 10836 13295 15441 4501.4 20988 13770 16911 18441 17307 17799 TRUE FALSE FALSE 10076.45236 12241.45578 21420.16872 10479.48669 18355.48933 12071.1974 12679.68893 14242.38686 18807.18469 13342.01455 0.755242195 0.9175118 1.605467349 0.785450102 1.375765951 0.90475073 0.9503579 1.067483985 1.40962106 1 13.7036889 -4.532577839 24.97799923 1.130115966 0.795809326 0.20949628 0.242656461 250.9794103 646345.7089 0.058979567 0.156455918 2.93E-05 4.532577839 -0.33430664 FPPEDFRHS(ph)PEDFR ddPTM_HeLa_A485_30min_R1 6 FPPEDFRHSPEDFR 14 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR ;;;;; 143.46 5.79E-08 3162110000 1309374 1731622 1763598 1370374 1886815 1511293 1689356 1581981 1587355 1756403 TRUE FALSE FALSE 1600639.729 1934120.13 2416026.29 1445234.062 1698957.074 1590421.965 1328411.29 1193997.679 1905922.588 1318564.056 1.213926408 1.466838202 1.832316206 1.09606663 1.288490358 1.206177248 1.00746815 0.905528763 1.445453165 1 20.33053623 -5.299742214 24.94056951 1.135633997 1.500608238 0.412283971 0.201748245 509.079503 331481.804 0.05726882 0.084945173 5.01E-06 5.299742214 0.364974241 FPPEDFRHS(ph)PEDFR ddPTM_HeLa_A486_30min_R1 8 FPPEDFRHSPEDFR 14 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR ;;;;;;; 191.07 5.46E-18 4550400000 2724030 2950570 2445730 947993 2994450 2682408 2837066 2847930 2505390 3055716 TRUE FALSE FALSE 2533089.564 2716756.087 3392782.155 2206975.613 2618858.159 2351479.774 2127202.079 2199518.509 2722559.222 2290544.824 1.105889541 1.186074186 1.481211858 0.963515575 1.143334167 1.026602819 0.928688257 0.960259972 1.188607703 1 21.12725936 -5.294901719 24.99951544 1.028829599 1.250560258 0.442612434 0.116944748 578.015508 431830.7622 0.033241161 0.049308044 5.07E-06 5.294901719 0.221730659 FPPMDNDS(ph)TFLHSTPER ddPTM_HeLa_A486_30min_R1 1 FPPMDNDSTFLHSTPER 17 0 H7C3L4;E7EQA9;Q92844 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 FPPMDNDS(0.25)T(0.25)FLHS(0.25)T(0.25)PER 43.297 0.023395 350370000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 FPTTATKIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 FPTTATKISPK 11 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 FPT(0.006)T(0.006)AT(0.078)KIS(0.909)PK;FPT(0.134)T(0.134)AT(0.117)KIS(0.614)PK ; 53.828 0.020481 3671300000 2192860 1727380 1022740 3552900 2673110 2200100 4114600 3933300 1720440 5168600 TRUE FALSE FALSE 2680654.142 1929382.065 1401094.086 3746985.931 2406965.783 2315293.834 3235482.097 2968652.008 2065716.527 3880163.141 0.690861194 0.497242511 0.36109154 0.96567742 0.620325923 0.596700126 0.833852078 0.765084328 0.532378782 1 21.88768588 -14 0.113365636 2.061594445 0.473795608 0.286872526 0.165057364 214.574451 1.601355052 53.23943922 1.926521452 1.00E-14 14 -1.587798837 FPTTATKIS(ph)PK ddPTM_HeLa_A486_30min_R1 2 FPTTATKISPK 11 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 FPTTAT(0.001)KIS(0.999)PK;FPT(0.006)T(0.006)AT(0.073)KIS(0.916)PK ; 128.96 2.34E-05 2906500000 2990600 2431110 1077220 2324920 2366030 3241800 5101900 4758900 1725740 5442700 TRUE FALSE FALSE 2780974.383 2238459.99 1494348.433 5412531.255 2069260.455 2841859.676 3825350.658 3675402.356 1875328.533 4079812.494 0.681642695 0.54866737 0.366278704 1.326661768 0.50719499 0.696566247 0.937629036 0.900875313 0.459660471 1 21.96007142 FQAPS(ph)PSTLLR ddPTM_HeLa_A485_30min_R1 3 FQAPSPSTLLR 11 0 Q6P9B9 Q6P9B9 INTS5 Integrator complex subunit 5 1 0 FQAPS(0.964)PS(0.03)T(0.006)LLR;FQAPS(0.992)PS(0.004)T(0.004)LLR;FQAPS(0.974)PS(0.018)T(0.008)LLR ;; 85.42 0.003686 226473000 259175 366500 352940 313654 401360 303075 361600 398470 294685 360950 TRUE FALSE FALSE 316827.5846 409358.9869 483507.1931 330788.1238 361399.1891 318943.5384 284341.206 300744.6077 353825.5765 270971.8078 1.169227113 1.510706926 1.78434501 1.220747378 1.33371509 1.177035873 1.049338705 1.109874161 1.305765273 1 18.04778323 -5.867698803 1.600299215 1.130653113 1.475333285 0.411145311 0.17092358 0.372730253 1.973195793 0.065788887 0.081284274 1.36E-06 5.867698803 0.344680172 FQAPS(ph)PSTLLR ddPTM_HeLa_A486_30min_R1 3 FQAPSPSTLLR 11 0 Q6P9B9 Q6P9B9 INTS5 Integrator complex subunit 5 1 0 FQAPS(0.971)PS(0.024)T(0.005)LLR;FQAPS(0.967)PS(0.018)T(0.015)LLR;FQAPS(0.964)PS(0.027)T(0.009)LLR ;; 78.287 0.008271 171618000 376490 389950 291507 177256 385490 351377 355210 379380 315149 409580 TRUE FALSE FALSE 350099.9952 359048.9418 404386.3172 412660.926 337138.2496 308027.6783 266332.701 293003.4558 342466.3691 307018.5021 1.14032214 1.169470046 1.317139894 1.344091393 1.098104014 1.003287021 0.867480947 0.954351135 1.115458406 1 18.22796607 -6.027779726 3.501787096 0.979729208 1.242551049 0.683676835 0.081123522 0.145625643 3.730569095 0.029537942 0.031363065 9.38E-07 6.027779726 0.262821841 FQDGDLTLYQSNTILR ddPTM_HeLa_A485_30min_R1 2 FQDGDLTLYQSNTILR 16 0 P09211;A8MX94;A0A087X2E9 P09211 GSTP1 Glutathione S-transferase P 0 0 ; ; 259.68 2.53E-42 73764000 27188 32691 32524 30618 44450 31952 42509 44730 32420 40351 FALSE FALSE TRUE 33235.8768 36513.92808 44555.98104 32290.58381 40024.40193 33624.95731 33426.60488 33759.89737 38926.39663 30292.23831 1.097174678 1.205388909 1.470871204 1.065968896 1.321275817 1.110018909 1.103470947 1.114473517 1.285028734 1 14.88666056 -6.288528959 24.37681268 1.128557535 1.234681544 0.162338336 0.123974167 1084.888958 976243.4248 0.042864311 0.037812194 5.15E-07 6.288528959 0.106124009 FQELES(ph)ETLK ddPTM_HeLa_A485_30min_R1 1 FQELESETLK 10 0 E9PFE6;P15309;P15309-2 E9PFE6 ACPP Prostatic acid phosphatase;PAPf39 1 0 FQELES(0.999)ET(0.001)LK 64.121 0.010032 0 66066 182930 237790 63169 129210 165890 107880 148630 172240 97438 TRUE FALSE FALSE 80762.15377 204322.0722 325758.4163 66619.76252 116345.3987 174575.7439 84830.5567 112178.2595 206806.9881 73148.49981 1.104084896 2.793250343 4.453384787 0.910746805 1.590537045 2.386593633 1.159703301 1.533568832 2.827221182 1 16.15854066 -5.301348921 24.9999885 1.662313244 2.784545269 0.241265347 0.936402713 749.5180923 469508.7935 0.265150171 0.393287072 5.00E-06 5.301348921 1.122232025 FQELLAS(ph)PAYR ddPTM_HeLa_A485_30min_R1 4 FQELLASPAYR 11 0 Q9NSI2-2;Q9NSI2 Q9NSI2-2 FAM207A Protein FAM207A 1 0 FQELLAS(1)PAYR;FQELLAS(1)PAYR;FQELLAS(1)PAYR;FQELLAS(1)PAYR ;;; 159.75 8.91E-08 267816000 321641 361946 345271 292129 464351 332108 393455 439248 317390 432730 TRUE FALSE FALSE 393188.9308 404272.4362 473001.1108 308087.2676 418118.584 349496.6613 309390.125 331521.7393 381087.2617 324858.3748 1.210339524 1.244457485 1.456022524 0.948374096 1.28707959 1.075843163 0.952384636 1.020511598 1.173087386 1 18.30945137 -5.755174718 1.030868409 1.041921933 1.280930677 0.339675054 0.128038168 0.6103218 1.385438387 0.05747993 0.08908481 1.76E-06 5.755174718 0.239008744 FQELLAS(ph)PAYR ddPTM_HeLa_A486_30min_R1 1 FQELLASPAYR 11 0 Q9NSI2-2;Q9NSI2 Q9NSI2-2 FAM207A Protein FAM207A 1 0 FQELLAS(1)PAYR 187.63 1.14E-10 49376000 97631 107180 79810 33842 115190 79012 100960 100870 82029 93326 TRUE FALSE FALSE 90787.57107 98686.66646 110714.5694 78785.88628 100741.7961 69264.30278 75698.74015 77904.10298 89139.33977 69956.56215 1.29777062 1.410684908 1.582618785 1.126211521 1.440062133 0.99010444 1.08208205 1.113606795 1.274209839 1 16.09417177 -6.256303183 24.97520524 1.098481137 1.37175329 0.535431951 0.130089425 353.3570268 1718231.005 0.04361897 0.042363465 5.54E-07 6.256303183 0.273272153 FQELS(ph)QPR ddPTM_HeLa_A485_30min_R1 1 FQELSQPR 8 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 FQELS(1)QPR 112.85 0.0010988 148520000 86482 125430 112680 91955 116970 108270 105630 122940 100760 102050 TRUE FALSE FALSE 105719.6225 140097.9474 154365.021 96978.26881 105324.0561 113938.8498 83061.28758 92788.77224 120981.6078 76610.81309 1.379956931 1.828696782 2.014924719 1.265856149 1.374793607 1.487242403 1.084197964 1.211170702 1.579171437 1 16.22526041 -5.28133048 24.84656687 1.298529196 1.749943209 0.476086379 0.218461168 624.9341409 780622.5103 0.061255256 0.09099508 5.23E-06 5.28133048 0.451414014 FQEQECPPS(ph)PEPTRK ddPTM_HeLa_A485_30min_R1 2 FQEQECPPSPEPTRK 15 1 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 0 FQEQECPPS(1)PEPTRK;FQEQECPPS(0.732)PEPT(0.268)RK ; 140.06 1.40E-06 1641280000 457981 337870 193617 571066 353059 370185 495744 488429 340696 1120390 TRUE FALSE FALSE 559857.2934 377380.9574 265243.9854 602261.8896 317907.2063 389567.3142 389824.2445 368641.0219 409070.5622 841097.3922 0.66562719 0.448676884 0.315354664 0.716042988 0.377967176 0.463165524 0.463470994 0.438285774 0.486353383 1 19.68191334 -9.961455977 3.116720495 1.000288054 0.480817552 0.644562895 0.114423288 1677466.898 2657437.123 5534.652399 0.028160057 1.09E-10 9.961455977 -0.519470502 FQEQECPPS(ph)PEPTRK ddPTM_HeLa_A486_30min_R1 1 FQEQECPPSPEPTRK 15 1 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 0 FQEQECPPS(1)PEPTRK 137.43 9.83E-06 0 187520 293380 201900 95865 335540 328110 281400 293190 252240 338790 TRUE FALSE FALSE 174375.8164 270131.5003 280081.0871 223178.5647 293453.4444 287631.1242 210990.7437 226437.0373 274104.3663 253954.7788 0.686641209 1.063699221 1.102877797 0.878812227 1.155534248 1.132607646 0.830820135 0.891643143 1.07934321 1 17.9542121 -4.25581027 24.47646827 1.01244713 0.68664102 0.455852667 0.107604478 452.9819681 1969574.215 0.027873586 0.237900309 5.55E-05 4.25581027 -0.32580611 FQETEFLS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 FQETEFLSPPR 11 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 FQETEFLS(1)PPR;FQETEFLS(1)PPR ; 130.47 4.25E-05 1002740000 713780 930460 862710 576720 1196020 840790 934990 1028960 790420 871460 TRUE FALSE FALSE 872557.8985 1039269.203 1181862.329 608224.7533 1076940.049 884812.4643 735221.7483 776605.9467 949050.0438 654221.06 1.33373557 1.588559688 1.806518319 0.92969302 1.646140907 1.352467107 1.123812413 1.187069622 1.450656516 1 19.31941868 -6.960658843 0.118001779 0.733417141 1.87929262 0.234146107 0.23800096 13.37057565 1.221979369 4.736983446 6.051386479 1.09E-07 6.960658843 1.145875479 FQETEFLS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 FQETEFLSPPR 11 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 FQETEFLS(1)PPR;FQETEFLS(1)PPR;FQETEFLS(1)PPR;FQETEFLS(1)PPR ;;; 121.86 0.00011105 1615900000 1603690 1746450 1372230 652880 1901510 1760830 2094750 2072660 1399550 2025960 TRUE FALSE FALSE 1491279.612 1608054.942 1903594.206 1519937.635 1663004.885 1543596.697 1570621.394 1600760.564 1520864.121 1518646.429 0.981979468 1.058873817 1.253480843 1.000850234 1.095057317 1.016429281 1.034224533 1.054070607 1.001460308 1 20.53435459 -6.117268894 1.613195532 1.024393628 1.087368908 0.124400391 0.070524305 0.842789671 4.39501189 0.029609399 0.030016658 7.63E-07 6.117268894 0.06297528 FQGKGS(ph)VS(ph)CPLHASRGVLS(ph)FFS(ph)KK ddPTM_HeLa_A486_30min_R1 1 FQGKGSVSCPLHASRGVLSFFSKK 24 3 J3KSW2;J3KQ09;X6R2I3;Q9UNA4 J3KSW2 POLI DNA polymerase iota 4 0 FQGKGS(0.705)VS(0.747)CPLHAS(0.548)RGVLS(0.999)FFS(1)KK 42.319 0.021956 3807900000 4749500 4816800 2064300 98101 4031000 4011800 2269700 3185500 3917900 528570 TRUE FALSE FALSE 4416584.576 4435099.226 2863652.244 228384.0858 3525394.392 3516864.905 1701797.054 2460231.189 4257506.727 396212.6316 11.14700599 11.19373506 7.227564231 0.576417983 8.897733468 8.876205917 4.295161027 6.209370911 10.74550983 1 18.59591535 -4.817964929 4.634771221 6.062488082 11.21785295 0.312286358 3.116038327 0.232784218 10.1109739 0.815117956 1.876394696 1.52E-05 4.817964929 5.155364863 FQLCVLGQNAQTMAYNITPLRR ddPTM_HeLa_A485_30min_R1 3 FQLCVLGQNAQTMAYNITPLRR 22 1 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 0 0 ;; ;; 129.32 5.58E-09 67586000 53353 56088 61282 60371 76327 66275 87734 89583 53545 94332 FALSE FALSE TRUE 65221.19078 62647.0037 83952.76196 63668.91486 68727.61588 69745.05652 68988.91418 67612.62879 64290.99036 70816.76845 0.920985131 0.884635166 1.185492699 0.899065522 0.970499182 0.98486641 0.974188962 0.954754506 0.907849818 1 16.11180339 -7.306183577 4.423909841 0.947550313 0.976387796 0.010757391 0.081022974 1.16758266 51.48398345 0.046089724 0.021659901 4.94E-08 7.306183577 0.028837482 FQPHFGQQECVS(ph)PYR ddPTM_HeLa_A486_30min_R1 1 FQPHFGQQECVSPYR 15 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 FQPHFGQQECVS(0.985)PY(0.015)R 55.972 0.028242 248030000 207720 293860 214970 61052 304220 238610 242740 274450 205570 200000 TRUE FALSE FALSE 193159.9007 270573.4634 298212.1411 142132.1414 266061.8909 209172.7242 182003.8846 211963.7262 223388.9731 149918.6982 1.288431016 1.804801313 1.989159088 0.94806147 1.774707852 1.395241065 1.214017242 1.413857836 1.490067455 1 17.19382081 -11.83955194 0.105612918 2.00E-09 1.853197972 0.22300954 0.28710199 143.3561295 1.688944683 38.17046459 4.817651539 1.45E-12 11.83955194 1.85319797 FQS(ph)LGVAFYR ddPTM_HeLa_A485_30min_R1 2 FQSLGVAFYR 10 0 C9IZZ0;C9J592;C9J8S3;P51149 C9IZZ0 RAB7A Ras-related protein Rab-7a 1 0 FQS(1)LGVAFYR;FQS(1)LGVAFYR ; 109 0.0004962 0 75989.8 61962.9 50771.59 75638.4 66194.2 65800 97356.7 102394.1 54845.72 121640 TRUE FALSE FALSE 92893.46885 69208.92215 69554.11392 79770.33427 59603.67303 69245.18625 76555.64571 77281.78643 65852.75293 91317.38662 1.017259388 0.757894249 0.761674381 0.873550342 0.652708923 0.758291371 0.838346875 0.846298709 0.721141454 1 16.47860195 -9.779537482 11.50971256 1.000000184 0.799125351 0.280616956 0.094432221 0 0 0.089063763 0.021601135 1.66E-10 9.779537482 -0.200874833 FQS(ph)LGVAFYR ddPTM_HeLa_A486_30min_R1 1 FQSLGVAFYR 10 0 C9IZZ0;C9J592;C9J8S3;P51149 C9IZZ0 RAB7A Ras-related protein Rab-7a 1 0 FQS(1)LGVAFYR 117.79 0.00037563 41001000 39080 44287 40792 22353 48357 47254 60232 66984 49676 70483 TRUE FALSE FALSE 36340.69381 40777.53683 56587.75485 52038.91366 42291.61415 41424.28192 45161.31653 51733.20545 53981.95568 52833.59803 0.68783303 0.77181071 1.07105624 0.984958731 0.800468182 0.784051881 0.854784043 0.979172484 1.021735367 1 15.68916804 -4.565203171 8.982884676 0.924741002 0.708512064 0.457663182 0.091452567 0.253624363 50.37025095 0.025794432 0.06891808 2.72E-05 4.565203171 -0.216228938 FQS(ph)MPDGFVFK ddPTM_HeLa_A486_30min_R1 1 FQSMPDGFVFK 11 0 P30305-3 P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 FQS(1)MPDGFVFK 113.25 0.00042168 0 62138 83253 49867 39564 93502 92513 114240 114110 67997 113010 TRUE FALSE FALSE 57782.44708 76655.72908 69176.83788 92106.99145 81774.10729 81099.68666 85655.94369 88129.644 73891.03471 84711.56043 0.682108166 0.90490281 0.816616263 1.08730132 0.965324058 0.957362682 1.011148222 1.040349671 0.872266245 1 16.37027124 -3.661336714 0.849404122 0.987802147 0.117471291 0.625809533 0.069350845 3.617925288 0.988404497 0.023468971 3.740319891 0.000218104 3.661336714 -0.870330856 FQSDSSSYPTVDSNS(ph)LLGQSR ddPTM_HeLa_A485_30min_R1 1 FQSDSSSYPTVDSNSLLGQSR 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 FQSDSSSYPTVDS(0.013)NS(0.983)LLGQS(0.003)R 225.29 9.93E-36 88085000 54284 62282 68670 53797 108030 51829 94576 96886 74029 100550 TRUE FALSE FALSE 66359.28852 69565.33812 94073.8906 56735.79389 97274.15388 54542.6863 74369.06499 73124.55659 88885.94127 75484.73549 0.879108711 0.921581531 1.246263764 0.75161943 1.288659929 0.722565774 0.985219919 0.968733031 1.177535308 1 16.20389731 -7.728711783 24.56606536 1.088767727 0.97357216 0.066457502 0.177046067 392.0341208 294270.6274 0.111688995 0.042206864 1.87E-08 7.728711783 -0.115195567 FQSPQIQATIS(ph)PPLQPK ddPTM_HeLa_A485_30min_R1 2 FQSPQIQATISPPLQPK 17 0 Q7Z478;A0A087WYN9 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 1 0 FQSPQIQAT(0.006)IS(0.994)PPLQPK;FQSPQIQAT(0.015)IS(0.985)PPLQPK ; 247.27 1.01E-42 952020000 483970 561070 491520 599880 623320 605260 793670 897390 535880 867710 TRUE FALSE FALSE 591627.4568 626682.2558 673353.7019 632649.9254 561260.0722 636950.4777 624095.9208 677303.6954 643426.2006 651405.866 0.9082317 0.962045767 1.033693028 0.971206982 0.861613476 0.977808937 0.958075377 1.039756826 0.987750087 1 19.31319719 -7.179839658 7.769941953 1.010183469 0.954606231 0.25246064 0.044059798 0.443104771 37.73540588 0.022023089 0.012663678 6.61E-08 7.179839658 -0.055577237 FQSPQIQATIS(ph)PPLQPK ddPTM_HeLa_A486_30min_R1 2 FQSPQIQATISPPLQPK 17 0 Q7Z478;A0A087WYN9 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 1 0 FQSPQIQATIS(1)PPLQPK;FQSPQIQATIS(1)PPLQPK ; 260.31 1.43E-51 702150000 775320 725920 474300 276805 714500 722710 915220 890730 644080 974920 TRUE FALSE FALSE 720974.0718 668395.4554 657961.6622 644416.029 624880.7476 633549.3882 686222.2758 687930.2235 699909.373 730793.6863 0.986563082 0.914615805 0.90033846 0.881802951 0.855071355 0.866933308 0.939009585 0.941346698 0.95773867 1 19.47910464 -7.649934555 1.222448609 0.994236243 0.90049691 0.434787524 0.03509393 0.442766345 1.265914987 0.035445221 0.011724737 2.24E-08 7.649934555 -0.093739334 FQSQADQDQQASGLQS(ph)PPSR ddPTM_HeLa_A485_30min_R1 1 FQSQADQDQQASGLQSPPSR 20 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 FQSQADQDQQASGLQS(0.999)PPS(0.001)R 291.33 1.10E-86 170910000 45101 44004 54825 68142 77705 32021 53793 28033 52868 93363 TRUE FALSE FALSE 55133.56185 49149.88502 75107.04896 71864.42492 69968.41736 33697.57005 42299.6861 21157.8628 63478.12267 70089.32232 0.786618561 0.701246401 1.071590457 1.025326291 0.998274987 0.480780366 0.60351113 0.301869987 0.905674653 1 16.09690705 -6.255562749 24.97129127 0.611305593 0.919296297 0.254263656 0.213636876 569.1207937 2418340.718 0.070655507 0.068875464 5.55E-07 6.255562749 0.307990704 FQSQADQDQQASGLQS(ph)PPSR ddPTM_HeLa_A486_30min_R1 2 FQSQADQDQQASGLQSPPSR 20 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 FQSQADQDQQASGLQS(0.992)PPS(0.008)R;FQSQADQDQQASGLQS(1)PPSR ; 393.38 8.63E-158 391280000 92849 152320 123218 50375 160720 153398 147617 158551 134718 122766 TRUE FALSE FALSE 86340.76457 140249.6085 170931.3095 117275.5458 140560.9989 134473.3144 110681.6653 122452.3984 146395.4647 92024.59453 0.938235751 1.52404484 1.85745246 1.274393508 1.527428615 1.461275815 1.202740048 1.330648606 1.590829772 1 16.48973187 -6.731194981 23.4042939 1.308608591 1.45144616 0.067930623 0.25637789 310.9296172 240608.0774 0.097938019 0.075847495 1.86E-07 6.731194981 0.142837569 FQSSHHPTDITSLDQYVER ddPTM_HeLa_A485_30min_R1 1 FQSSHHPTDITSLDQYVER 19 0 P14625 P14625 HSP90B1 Endoplasmin 0 0 116.44 6.16E-05 98420000 69532 90130 95292 36976 113850 66058 76393 65041 57105 42878 FALSE FALSE TRUE 84999.15352 100669.9195 130544.4762 38995.90525 102514.6942 69516.69473 60071.01148 49089.59277 68565.4497 32189.30371 2.640602427 3.127433895 4.055523456 1.211455383 3.184744074 2.159620952 1.866179275 1.525028103 2.130069365 1 14.97429375 -6.50296321 0.331446821 1.032078219 3.454217812 0.439558147 0.685171251 1.686777419 0.428745986 0.874394899 1.48299792 3.14E-07 6.50296321 2.422139593 FQTGNKS(ph)PEVLR ddPTM_HeLa_A485_30min_R1 2 FQTGNKSPEVLR 12 1 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 0 FQT(0.066)GNKS(0.934)PEVLR;FQT(0.012)GNKS(0.988)PEVLR ; 93.478 0.00087271 307250000 448530 340170 184773 480880 322840 309160 462900 584740 269630 917660 TRUE FALSE FALSE 548303.9511 379949.9224 253128.2217 507149.2567 290696.916 325347.1395 363997.6335 441331.5982 323742.2678 688904.2503 0.795907343 0.551527912 0.367435999 0.736167989 0.421969985 0.472267575 0.528371879 0.640628357 0.469937974 1 19.39394395 -10.50977841 3.708925626 1.006850028 0.549147492 0.518748159 0.128860772 30914926.71 29300354.19 1582497.385 0.030221827 3.09E-11 10.50977841 -0.457702536 FQTGNKS(ph)PEVLR ddPTM_HeLa_A486_30min_R1 2 FQTGNKSPEVLR 12 1 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 0 FQT(0.062)GNKS(0.938)PEVLR;FQT(0.014)GNKS(0.986)PEVLR ; 111.83 0.00018283 387780000 619160 463680 265430 188486 469950 480160 572710 469850 411290 709070 TRUE FALSE FALSE 575760.0813 426936.3081 368211.6045 438804.9336 411004.4889 420922.7411 429411.9005 362875.4118 446940.9484 531514.2567 1.08324485 0.803245261 0.692759601 0.825575096 0.773270865 0.791931234 0.807902883 0.682719997 0.840882333 1 19.01974886 -4.264657525 5.546082455 0.787675138 1.093218941 0.498201696 0.08368708 0.101745081 12.48089157 0.019057633 0.118207899 5.44E-05 4.264657525 0.305543803 FRCPEALFQPSFLGMESCGIHETTFNSIMK ddPTM_HeLa_A485_30min_R1 5 FRCPEALFQPSFLGMESCGIHETTFNSIMK 30 1 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 161.8 5.76E-26 110955000 33200 66117 49021.3 18081.5 72899.6 63943.6 86494.5 121614 41756.1 41246.2 FALSE FALSE TRUE 40585.22546 73848.80801 67156.31882 19069.24656 65641.45986 67291.58802 68014.24348 91787.97582 50136.16626 30964.28142 1.310711039 2.384967602 2.16883182 0.615846572 2.119909032 2.173200376 2.196538733 2.964317969 1.619161303 1 14.91831735 -5.932990149 25 2.128616138 1.670665116 0.061440235 0.651070287 132.9183614 49587.22583 0.200024335 0.226807752 1.17E-06 5.932990149 -0.457951022 FRCPEALFQPSFLGMESCGIHETTFNSIMK ddPTM_HeLa_A486_30min_R1 4 FRCPEALFQPSFLGMESCGIHETTFNSIMK 30 1 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 170.46 1.40E-26 42931400 23063.8 21385.5 22817.2 3539.03 40614.3 20471.6 30683.3 32730.3 22436.7 20550.6 FALSE FALSE TRUE 21447.14672 19690.8351 31652.63091 8239.040693 35520.07578 17946.02213 23006.01381 25278.32519 24381.53122 15404.596 1.392256358 1.278244175 2.05475242 0.534843023 2.305810278 1.164978435 1.493451293 1.640959957 1.582743957 1 13.91107323 -10.07753585 4.718045092 0.999980381 1.494622331 0.095251163 0.456956542 9.66E-05 1.89E-05 0.404707022 0.098151513 8.36E-11 10.07753585 0.494641951 FRDGPPLR ddPTM_HeLa_A485_30min_R1 1 FRDGPPLR 8 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 0 94.692 0.0040474 169560000 33000 48370 49858 30830 52007 43297 50022 54634 37804 38516 FALSE FALSE TRUE 40340.73615 54026.45074 68302.54896 32514.16483 46829.00047 45563.96397 39334.39106 41234.92584 45390.91604 28914.67003 1.395165018 1.868478896 2.362210908 1.124486802 1.619558529 1.575807848 1.360361056 1.42609014 1.569823069 1 14.81951402 -9.466637352 0.123522733 0.333763762 2.078773927 0.291815495 0.305970581 36.89688067 1.179472078 12.77968797 4.288024282 3.41E-10 9.466637352 1.745010165 FRDQDLAS(ph)CDR ddPTM_HeLa_A485_30min_R1 1 FRDQDLASCDR 11 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 FRDQDLAS(1)CDR 77.726 0.0016753 0 105110 95815 78184 115420 114260 107340 144690 133220 93505 157160 TRUE FALSE FALSE 128491.3569 107019.7308 107107.5151 121725.1023 102883.8732 112960.1564 113775.7995 100547.5861 112270.5958 117982.9043 1.089067587 0.907078287 0.90782233 1.031718138 0.872023568 0.957428172 0.964341403 0.852221656 0.951583591 1 16.8482183 -4.254995329 24.63906893 0.934943959 1.089067672 0.425061034 0.052495898 559.9188659 2140800.184 0.012478132 0.11426359 5.56E-05 4.254995329 0.154123713 FRDQDLAS(ph)CDRDRSS(ph)R ddPTM_HeLa_A485_30min_R1 1 FRDQDLASCDRDRSSR 16 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 FRDQDLAS(1)CDRDRS(0.009)S(0.991)R 122.34 2.00E-05 521270000 136310 195510 218300 168640 285080 196770 279340 295510 210090 225520 TRUE FALSE FALSE 166631.6892 218373.1938 299058.2542 177852.3762 256696.4342 207072.5729 219656.727 223035.7092 252253.1359 169302.0144 0.984227446 1.289844037 1.766418759 1.050503603 1.516204253 1.223095742 1.29742536 1.317383671 1.489959448 1 17.36923961 FRDQDLAS(ph)CDRDRSS(ph)R ddPTM_HeLa_A486_30min_R1 2 FRDQDLASCDRDRSSR 16 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 FRDQDLAS(1)CDRDRS(0.019)S(0.981)R;FRDQDLAS(1)CDRDRS(0.153)S(0.848)R ; 91.238 0.00058197 1372800000 591130 676970 624200 268480 861080 714870 810710 889220 608410 800530 TRUE FALSE FALSE 549694.8396 623324.4317 865906.9567 625035.0082 753075.3171 626676.6077 607861.7832 686764.0175 661147.4687 600072.0774 0.916048022 1.038749269 1.443004914 1.041599887 1.25497477 1.044335558 1.012981284 1.144469212 1.101780092 1 19.19477627 FRDQDLASCDRDR ddPTM_HeLa_A485_30min_R1 2 FRDQDLASCDRDR 13 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 0 ; ; 179.5 3.97E-17 627670000 143934 202695 200242 137010 241106 193924 254550 231185 188997 195487 FALSE FALSE TRUE 175951.6217 226398.417 274319.8486 144494.5094 217100.6401 204077.5608 200163.313 174486.5163 226926.9643 146755.6886 1.198942429 1.542689208 1.869228043 0.984592221 1.479333729 1.390593869 1.363922005 1.188959133 1.546290754 1 17.1630569 -12.67297257 0.211593533 4.94E-10 1.460392542 0.201362466 0.231005902 126.3279765 2.088389113 55.32914243 0.499070879 2.12E-13 12.67297257 1.460392542 FRDQDLASCDRDRSS(ph)R ddPTM_HeLa_A485_30min_R1 7 FRDQDLASCDRDRSSR 16 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 FRDQDLASCDRDRS(0.039)S(0.961)R;FRDQDLASCDRDRS(0.158)S(0.842)R;FRDQDLASCDRDRS(0.004)S(0.996)R;FRDQDLASCDRDRS(0.094)S(0.906)R;FRDQDLASCDRDRS(0.013)S(0.987)R;FRDQDLASCDRDRS(0.091)S(0.909)R;FRDQDLASCDRDRS(0.016)S(0.984)R ;;;;;; 155.87 1.24E-07 46720860000 2053666 3879350 3676760 1730467 5748030 4740420 6159140 8887920 3563070 2629980 TRUE FALSE FALSE 2510496.917 4333006.237 5036946.527 1824998.03 5175735.951 4988621.061 4843189.423 6708143.684 4278145.467 1974374.387 1.27154046 2.19462239 2.551160793 0.924342436 2.621456186 2.526684449 2.453024844 3.397604693 2.166835983 1 20.91296415 FRDQDLASCDRDRSS(ph)R ddPTM_HeLa_A486_30min_R1 5 FRDQDLASCDRDRSSR 16 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 FRDQDLASCDRDRS(0.009)S(0.991)R;FRDQDLASCDRDRS(0.147)S(0.853)R;FRDQDLASCDRDRS(0.004)S(0.996)R;FRDQDLASCDRDRS(0.19)S(0.81)R;FRDQDLASCDRDRS(0.021)S(0.979)R ;;;; 171.47 1.81E-11 34380550000 2967649 2689191 3328369 1589477 6102300 2867424 4317079 5358280 2473526 3208954 TRUE FALSE FALSE 2759632.13 2476089.711 4617202.614 3700382.784 5336892.632 2513670.381 3236900.173 4138316.614 2687933.225 2405411.032 1.147260112 1.029383203 1.919506709 1.538357784 2.218702983 1.04500659 1.345674452 1.720419737 1.117452772 1 21.19785201 -7.906967915 5.998068354 1.00370011 1.498594529 0.190618583 0.363370237 0.326241893 15.72278054 0.358329445 0.093070764 1.24E-08 7.906967915 0.49489442 FRIDELEPR ddPTM_HeLa_A485_30min_R1 1 FRIDELEPR 9 1 F5H6X6;Q14697;Q14697-2 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 61.56 0.03669 65379000 42815 60671 55164 40848 66276 52564 60553 70050 46400 60426 FALSE FALSE TRUE 52339.04904 67765.94568 75571.45917 43079.42281 59677.32873 55316.16976 47615.35688 52870.12767 55712.05439 45362.91026 1.15378508 1.493862393 1.665930575 0.949661796 1.315553354 1.219414042 1.049653927 1.165492411 1.228141098 1 15.46922558 -5.26436546 24.9998888 1.147244322 1.443459649 0.440475215 0.15703582 241.9629546 2067290.159 0.043455194 0.06773475 5.44E-06 5.26436546 0.296215328 FRLNLYELK ddPTM_HeLa_A485_30min_R1 1 FRLNLYELK 9 1 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 90.108 0.015695 20758000 14416 18185 12730 15749 20952 18043 22692 27150 14037 20134 FALSE FALSE TRUE 17622.78947 20311.57756 17439.35674 16609.32799 18865.94531 18987.70358 17843.66882 20491.41993 16854.09715 15114.96434 1.165916708 1.343805854 1.153780872 1.098866502 1.248163402 1.25621888 1.180529998 1.355704153 1.115060331 1 13.88368995 -8.000984605 24.98595529 0.999999988 1.223784047 0.466146112 0.076927823 23.55020434 597642.3854 0.073548736 0.018990202 9.98E-09 8.000984605 0.223784059 FRLNLYELK ddPTM_HeLa_A486_30min_R1 1 FRLNLYELK 9 1 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 113.62 0.0022118 20262000 23864 17007 12407 8266.7 24087 19823 23196 25675 18365 25576 FALSE FALSE TRUE 22191.25683 15659.30338 17211.32267 19245.29538 21065.78386 17377.43981 17392.11546 19829.36298 19956.89299 19171.60313 1.157506583 0.816796763 0.897750833 1.003843823 1.098801374 0.906415582 0.907181071 1.034309069 1.040961095 1 14.22668336 -7.303128419 23.88652895 1.02822638 0.964942146 0.064329171 0.095253362 850.2852837 487181.1723 0.05240953 0.02517724 4.98E-08 7.303128419 -0.063284234 FRLT(ph)PPS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 FRLTPPSPVR 10 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 2 0 FRLT(1)PPS(1)PVR 56.147 0.032481 114460000 37823 48946 48077 33675 54220 49690 54036 56306 40002 48468 TRUE FALSE FALSE 46236.59586 54669.80893 65862.68295 35514.57998 48821.66642 52291.69156 42490.76717 42496.86522 48030.03448 36385.81959 1.270731191 1.50250316 1.810119538 0.976055518 1.341777291 1.437144804 1.167783704 1.167951298 1.320020685 1 15.15108869 -7.10280237 0.183863054 0.900090963 1.615099363 0.25837727 0.20249442 5.043776933 0.844734951 1.167678109 1.487371278 7.89E-08 7.10280237 0.7150084 FRLT(ph)PPS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 FRLTPPSPVR 10 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 2 0 FRLT(1)PPS(1)PVR;FRLT(1)PPS(1)PVR ; 85.837 0.0034091 219350000 147825 166332 134967 48969 167120 150799 154176 155456 135337 167575 TRUE FALSE FALSE 137463.2309 153151.2465 187229.8369 114002.3068 146158.2513 132194.9526 115599.5341 120062.0624 147068.1201 125613.1293 1.094338081 1.21922961 1.490527607 0.907566808 1.163558715 1.052397575 0.920282257 0.955808227 1.170802137 1 16.93862774 -5.278789053 24.98221657 1.025137249 1.263151583 0.448089842 0.123897018 734.3870584 1057460.235 0.035170709 0.052306771 5.26E-06 5.278789053 0.238014334 FRLTPPS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 FRLTPPSPVR 10 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 FRLT(0.029)PPS(0.971)PVR;FRLT(0.02)PPS(0.98)PVR;FRLT(0.002)PPS(0.998)PVR;FRLT(0.047)PPS(0.953)PVR ;;; 138.02 1.42E-05 1490618000 365188 680222 513246 257486 550132 651182 722445 889138 415243 345138 TRUE FALSE FALSE 446422.8107 759768.0458 703117.0533 271551.8082 495358.9264 685276.8826 568088.7239 671075.5114 498578.4613 259101.4484 1.722965323 2.93231879 2.713674731 1.048052066 1.911833876 2.644820733 2.192533957 2.590010652 1.924259646 1 17.98315755 -8.022576242 21.54439786 0.999999973 2.225816868 0.325606064 0.527734241 358.5554533 342169.4031 0.527504657 0.136201117 9.49E-09 8.022576242 1.225816895 FRLTPPS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 FRLTPPSPVR 10 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 FRLTPPS(1)PVR;FRLT(0.001)PPS(0.999)PVR ; 153.39 1.33E-06 858180000 451850 390020 299570 149847 420090 284020 384280 390140 275460 524440 TRUE FALSE FALSE 420177.6484 359113.3948 415571.5268 348851.3888 367398.395 248980.5001 288129.0795 301313.6387 299337.0946 393116.8105 1.068836634 0.913503023 1.057119705 0.887398808 0.934578184 0.633349919 0.732935025 0.766473554 0.761445674 1 18.58459853 -6.096710503 5.915269703 0.761621349 0.974187151 0.479700509 0.100674276 0.187441203 9.395715201 0.03184449 0.032019378 8.00E-07 6.096710503 0.212565802 FRMPS(ph)LR ddPTM_HeLa_A485_30min_R1 1 FRMPSLR 7 1 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FRMPS(1)LR 105.4 0.0016778 168490000 88644 85737 97323 74752 75944 59897 73723 71789 67911 94695 TRUE FALSE FALSE 108362.552 95763.19634 133326.8276 78835.51248 68382.7487 63033.1143 57971.47879 54182.63519 81540.11478 71089.27923 1.524316369 1.347083518 1.875484308 1.108964858 0.961927726 0.886675389 0.81547428 0.762177304 1.147010009 1 16.11734439 -5.460617634 4.957711419 0.917376953 1.557503266 0.775717932 0.156784108 0.096352944 4.756437812 0.044845404 0.066152865 3.46E-06 5.460617634 0.640126313 FRNQVEEDAEDS(ph)GEADDEEKPEIHKPGQNSFSK ddPTM_HeLa_A485_30min_R1 2 FRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSK 33 3 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 FRNQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK;FRNQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK ; 252.15 3.12E-52 1799500000 500350 411270 200074 552740 491350 603690 1041030 1247880 376740 854790 TRUE FALSE FALSE 611651.1313 459364.4489 274089.6984 582934.7866 442429.4688 635298.2749 818605.4361 941835.4734 452348.2623 641706.5842 0.953163247 0.715848115 0.427126206 0.908413286 0.68945758 0.990013646 1.275669373 1.467704238 0.704914479 1 19.29155426 -6.435165923 3.659461142 1.150650507 0.730440572 0.373732244 0.22696931 0.236875274 5.935614734 0.084872661 0.072133606 3.67E-07 6.435165923 -0.420209935 FRNS(ph)VEGLNQEIEIIIK ddPTM_HeLa_A485_30min_R1 2 FRNSVEGLNQEIEIIIK 17 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 FRNS(1)VEGLNQEIEIIIK;FRNS(1)VEGLNQEIEIIIK ; 203.48 1.93E-25 46759000 64832 71351 55314 69901 69698 65760 93790 90149 61032 102782 TRUE FALSE FALSE 79253.65473 79694.87878 75776.95041 73719.51463 62758.6224 69203.09192 73751.00031 68039.8164 73280.56258 77160.33896 1.027129427 1.032847702 0.982071248 0.955406827 0.813353379 0.896873871 0.955814882 0.88179779 0.949717997 1 16.23557186 -5.190783755 2.331091524 0.910869158 1.026916865 0.450593789 0.048348942 0.255006136 2.703035699 0.014193088 0.028496347 6.44E-06 5.190783755 0.116047708 FRNS(ph)VEGLNQEIEIIIK ddPTM_HeLa_A486_30min_R1 2 FRNSVEGLNQEIEIIIK 17 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 FRNS(1)VEGLNQEIEIIIK;FRNS(1)VEGLNQEIEIIIK ; 170.91 1.77E-12 55612000 84543 74344 54112 52924 81745 85389 95080 83813 72004 108226 TRUE FALSE FALSE 78616.97228 68452.71068 75065.61557 123209.7466 71491.77986 74854.57335 71289.97835 64730.60952 78245.36469 81125.50517 0.96907837 0.84378779 0.925302288 1.518754754 0.881249118 0.92270086 0.878761595 0.797907013 0.964497719 1 16.30786794 FRPAGAAPRPPPKPM ddPTM_HeLa_A485_30min_R1 2 FRPAGAAPRPPPKPM 15 3 Q5JNZ5;P62854 Q5JNZ5 RPS26P11;RPS26 Putative 40S ribosomal protein S26-like 1;40S ribosomal protein S26 0 0 ; ; 85.457 0.0040566 15592300 16702.2 27156 32997 18539.2 34409 26010 30368 34126 29721 33997 FALSE FALSE TRUE 20417.54677 30331.65797 45203.96342 19551.94955 30983.11914 27371.84338 23879.62872 25756.54499 35685.73208 25522.17357 0.799992474 1.18844337 1.771164329 0.766076976 1.213968672 1.072473052 0.935642439 1.009183051 1.398224645 1 14.63946358 FRRS(ph)ET(ph)PPHWR ddPTM_HeLa_A485_30min_R1 2 FRRSETPPHWR 11 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR ; 93.424 0.011969 1587660000 165575 303170 440310 340580 928200 418310 708590 990020 486250 563030 TRUE FALSE FALSE 202406.5875 338623.0943 603198.9918 359185.023 835785.1489 440212.0648 557193.9579 747216.0427 583835.9149 422676.9828 0.478868251 0.801139187 1.427092121 0.849786096 1.977361396 1.041485774 1.31825006 1.767818152 1.381281543 1 18.68919603 -4.319543146 1.067014849 1.399626225 0.026670626 0.426656479 0.329343661 1.445708025 1.451212241 0.10171685 2.207262202 4.79E-05 4.319543146 -1.372955599 FRRS(ph)ET(ph)PPHWR ddPTM_HeLa_A486_30min_R1 3 FRRSETPPHWR 11 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR;FRRS(1)ET(1)PPHWR ;; 109.79 0.0029494 2876230000 519334 600047 916740 415462 1770160 854100 1064910 1378820 586691 584298 TRUE FALSE FALSE 482931.3684 552497.0904 1271726.279 967216.5323 1548130.027 748729.8259 798458.2545 1064892.785 637545.8483 437985.9777 1.102618333 1.261449267 2.903577612 2.208327621 3.5346566 1.709483554 1.823022415 2.431339905 1.45563073 1 18.74052516 -7.954385656 4.497578714 1.004441352 2.14279779 0.223643024 0.689939328 0.270245268 11.70452507 0.695026944 0.181965843 1.11E-08 7.954385656 1.138356438 FRRVAK ddPTM_HeLa_A486_30min_R1 1 FRRVAK 6 2 Q9H501 Q9H501 ESF1 ESF1 homolog 0 0 16.362 0.038006 83881000 10021 11608 7467.1 5997.8 12435 11568 13235 15319 10986 13771 FALSE FALSE TRUE 9318.579648 10688.1398 10358.5611 13963.18151 10875.28635 10140.85777 9923.463014 11831.19811 11938.27533 10322.65197 0.902731166 1.03540639 1.003478673 1.352673863 1.053536086 0.982388809 0.961328838 1.146139398 1.156512432 1 13.33352604 -4.337428347 1.881154968 1.087952116 0.867013724 0.198466912 0.109767613 1.193347201 5.005349242 0.03150052 0.438469153 4.60E-05 4.337428347 -0.220938392 FRRVS(ph)CFLR ddPTM_HeLa_A486_30min_R1 1 FRRVSCFLR 9 2 Q5JTJ3-2 Q5JTJ3-2 1 0 FRRVS(1)CFLR 65.5 0.014548 167340000 99968 175060 252950 3726.5 265440 71490 48678 86611 141540 16245 TRUE FALSE FALSE 92960.75944 161187.608 350899.0142 8675.480327 232146.0401 62670.29066 36498.24954 66891.566 153808.8012 12177.14626 7.63403489 13.23689513 28.81619442 0.712439527 19.06407586 5.146549882 2.997274464 5.493205433 12.63093978 1 13.57188845 -6.284420957 23.83926036 5.580897383 13.953136 0.247735263 7.350860478 665.0360111 689852.295 2.546709861 2.247816985 5.19E-07 6.284420957 8.372238616 FRT(ph)PSFLK ddPTM_HeLa_A485_30min_R1 1 FRTPSFLK 8 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.998)PS(0.002)FLK 67.993 0.021726 147210000 126200 88115 80233 183160 146750 100050 130630 107600 96364 240740 TRUE FALSE FALSE 154272.7546 98419.28275 109914.5255 193165.567 132139.0547 105288.4633 102719.8334 81210.93129 115703.3709 180727.9485 0.85361869 0.54457146 0.60817669 1.068819563 0.731148977 0.582579862 0.568367174 0.449354579 0.640207405 1 17.4634601 -6.194925102 5.976751949 0.608881567 0.759134192 0.064787587 0.188634445 0.506796623 34.96781603 0.063048012 0.062817729 6.38E-07 6.194925102 0.150252625 FRT(ph)PSFLK ddPTM_HeLa_A486_30min_R1 2 FRTPSFLK 8 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.997)PS(0.003)FLK;FRT(1)PSFLK ; 107.03 0.0016138 786160000 740240 787620 426970 338640 707640 957450 946450 881540 660400 912610 TRUE FALSE FALSE 688352.9986 725206.1227 592304.2187 788371.0339 618881.1927 839329.5536 709638.1995 680832.5859 717644.0037 684086.5159 1.006236759 1.060108781 0.865832325 1.152443464 0.904682636 1.226934802 1.037351538 0.995243394 1.04905445 1 19.38381927 -3.911169609 8.530439305 1.03306336 0.852703149 0.006097766 0.099907321 31499.27424 144716.6153 0.023605049 90452.255 0.000122696 3.911169609 -0.180360212 FRT(ph)PSFLKK ddPTM_HeLa_A486_30min_R1 1 FRTPSFLKK 9 2 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.988)PS(0.012)FLKK 71.451 0.013673 459460000 1133700 955500 472970 512300 1011600 1169500 1429500 1385200 736610 1453300 TRUE FALSE FALSE 1054233.484 879782.7001 656116.6506 1192660.29 884715.6952 1025218.981 1071823.98 1069820.199 800459.9479 1089384.221 0.96773339 0.807596331 0.602282132 1.094802245 0.812124573 0.941099532 0.983880581 0.982041211 0.734782029 1 20.05508144 -5.268819453 24.99952276 0.931889008 0.794043187 0.214585965 0.125220613 897.3274413 3039638.407 0.034552781 0.052413968 5.38E-06 5.268819453 -0.137845821 FRTPS(ph)FLK ddPTM_HeLa_A485_30min_R1 2 FRTPSFLK 8 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.02)PS(0.98)FLK;FRT(0.012)PS(0.988)FLK ; 84.507 0.0027813 1352110000 743360 694040 539380 834170 801370 733110 1013400 967750 736060 1116290 TRUE FALSE FALSE 908717.8674 775201.9407 738919.1075 879738.5949 721582.789 771494.506 796878.8113 730407.7951 883780.4905 838019.4468 1.084363699 0.925040515 0.881744583 1.049783031 0.861057332 0.920616471 0.950907302 0.871588121 1.054606183 1 19.6766242 -7.779824242 24.99943517 1.02730313 0.94081507 0.186123374 0.070265799 448.7248445 610151.6284 0.064531747 0.016790112 1.66E-08 7.779824242 -0.086488061 FRTPS(ph)FLK ddPTM_HeLa_A486_30min_R1 2 FRTPSFLK 8 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.018)PS(0.982)FLK;FRT(0.003)PS(0.997)FLK ; 110.93 0.00057508 1360620000 1132910 1016170 548820 449330 831040 1007550 1172420 1152500 752490 1189220 TRUE FALSE FALSE 1053498.859 935644.9884 761337.8019 1046062.948 726803.2141 883248.725 879068.1154 890100.9089 817716.4391 891431.5715 1.181805641 1.049598217 0.854061968 1.173464101 0.815321374 0.990820556 0.986130785 0.998507275 0.917307021 1 19.76576453 -4.407041338 3.684313001 0.969414723 1.179480931 0.337294872 0.092106696 0.263029262 5.820355879 0.021796203 0.113225768 3.92E-05 4.407041338 0.210066208 FRTPS(ph)FLKK ddPTM_HeLa_A485_30min_R1 2 FRTPSFLKK 9 2 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.03)PS(0.97)FLKK;FRT(0.007)PS(0.993)FLKK ; 126.12 0.00012863 9337100000 2971540 2606160 1691400 3394580 3598620 3504760 5427400 6050400 3125680 5649800 TRUE FALSE FALSE 3632548.821 2910927.741 2317119.245 3580017.31 3240328.757 3688263.814 4267791.652 4566529.913 3752975.306 4241408.837 0.856448638 0.686311519 0.546308864 0.844063246 0.763974632 0.869584602 1.006220295 1.076654029 0.884841676 1 22.01611212 -6.35432945 1.470734928 1.001502402 0.714838223 0.623803655 0.092258571 0.261511956 1.134365159 0.04440235 0.037324485 4.42E-07 6.35432945 -0.286664179 FRTPS(ph)FLKK ddPTM_HeLa_A486_30min_R1 1 FRTPSFLKK 9 2 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 FRT(0.247)PS(0.753)FLKK 88.021 0.0027528 3753400000 5058400 4657400 1933000 2280600 3819200 5506800 6257800 6341000 3268100 6522300 TRUE FALSE FALSE 4703832.282 4288330.662 2681509.368 5309352.055 3340160.323 4827427.005 4692032.252 4897292.723 3551381.539 4889073.627 0.962111157 0.8771254 0.548469827 1.085962794 0.683188796 0.98739094 0.959697605 1.001681115 0.726391503 1 22.2211297 -6.32276847 24.99925215 0.936678887 0.83233871 0.100019693 0.15542087 588.5727752 239914.7963 0.052972323 0.046717204 4.76E-07 6.32276847 -0.104340177 FRYS(ph)GR ddPTM_HeLa_A485_30min_R1 8 FRYSGR 6 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;A0A0A0MSA4;A0A0A0MRA8;A8K968;A0A1B0GTF8;B5MC67;H0YKW6;H0Y5N1;J3KT37;A0A087WVP2;Q9Y2J2;Q9Y2J2-4;Q9Y2J2-2;Q9Y2J2-3;Q7Z6J6-2;Q7Z6J6;Q9H4G0-4;A0A1B0GWG0;A0A2R8Y6D0;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0;O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 Q9H4G0-3;Q9H4G0-4;A0A1B0GWG0;P11171;O43491 EPB41L1;EPB41L3;FRMD5;EPB41;EPB41L2 "Band 4.1-like protein 1;Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed;FERM domain-containing protein 5;Protein 4.1;Band 4.1-like protein 2" 1 0 FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR ;;;;;;; 100.39 0.0058153 7802450000 1795946 2519455 2276845 1541809 2632842 2164353 2559429 3092990 2229600 2355245 TRUE FALSE FALSE 2195447.992 2814083.346 3119144.713 1626034.122 2370707.006 2277675.176 2012586.086 2334429.353 2677060.269 1768125.767 1.241680899 1.591562885 1.764096634 0.919637139 1.34080225 1.28818618 1.138259576 1.320284675 1.514066657 1 20.75378947 -5.25078104 24.99504338 1.235468414 1.538358388 0.337218755 0.201279804 867.2502781 2033798.635 0.054239179 0.09273394 5.61E-06 5.25078104 0.302889974 FRYS(ph)GR ddPTM_HeLa_A486_30min_R1 7 FRYSGR 6 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;A0A0A0MSA4;A0A0A0MRA8;A8K968;A0A1B0GTF8;B5MC67;H0YKW6;H0Y5N1;J3KT37;A0A087WVP2;Q9Y2J2;Q9Y2J2-4;Q9Y2J2-2;Q9Y2J2-3;Q7Z6J6-2;Q7Z6J6;Q9H4G0-4;A0A1B0GWG0;A0A2R8Y6D0;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0;O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 Q9H4G0-3;Q9H4G0-4;A0A1B0GWG0;P11171;O43491 EPB41L1;EPB41L3;FRMD5;EPB41;EPB41L2 "Band 4.1-like protein 1;Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed;FERM domain-containing protein 5;Protein 4.1;Band 4.1-like protein 2" 1 0 FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR;FRYS(1)GR ;;;;;; 105.25 0.0049889 5837220000 2172150 2207650 1733490 680754 2126180 1802650 2102500 2465500 1783230 2010820 TRUE FALSE FALSE 2019893.502 2032707.774 2404743.752 1584829.715 1859494.679 1580257.371 1576432.262 1904159.471 1937801.812 1507297.584 1.340076123 1.348577611 1.595400788 1.05143784 1.233661288 1.048404368 1.045866642 1.263293653 1.285613294 1 20.52353284 -5.272506596 24.99577099 1.140669047 1.420074123 0.580079144 0.114975804 527.8648326 1192203.812 0.032890319 0.049295833 5.34E-06 5.272506596 0.279405077 FS(ph)FKKPFK ddPTM_HeLa_A486_30min_R1 1 FSFKKPFK 8 2 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 FS(1)FKKPFK 58.223 0.026843 203340000 226490 250090 105270 190940 198410 298220 361840 439570 173660 338200 TRUE FALSE FALSE 210614.2206 230271.9576 146033.3632 444517.9696 173523.5677 261428.6485 271303.8048 339489.5067 188712.9886 253512.5187 0.830784301 0.908325785 0.576040047 1.753435972 0.684477313 1.031225794 1.070179123 1.339142968 0.744393175 1 17.95169747 FS(ph)GGFGAR ddPTM_HeLa_A485_30min_R1 8 FSGGFGAR 8 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;O15523-2;O15523;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 1 0 FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR ;;;;;;; 152.11 0.00019806 6451897000 2926360 2673390 2600620 3678070 3941110 2486000 3482540 2980820 2646780 4589180 TRUE FALSE FALSE 3577318.686 2986019.705 3562697.559 3878993.651 3548719.25 2616163.116 2738466.879 2249769.221 3177964.468 3445181.884 1.038354086 0.866723385 1.034110151 1.125918393 1.030052801 0.75936865 0.794868594 0.653018998 0.922437356 1 21.71614872 -6.256394764 24.37080583 0.80231052 1.017346033 0.444336042 0.106328696 256.7199216 1240228.714 0.035482657 0.03442005 5.54E-07 6.256394764 0.215035513 FS(ph)GGFGAR ddPTM_HeLa_A486_30min_R1 8 FSGGFGAR 8 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;O15523-2;O15523;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 1 0 FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR ;;;;;;; 178.55 8.55E-06 5908900000 2658050 3106780 2041010 1430111 2767170 3111420 3511120 3242830 2581760 3601850 TRUE FALSE FALSE 2471734.421 2860587.438 2831343.732 3329370.682 2420085.736 2727564.635 2632600.639 2504508.399 2805549.036 2699923.316 0.915483194 1.059506921 1.048675611 1.233135275 0.896353508 1.010237816 0.975064967 0.927622049 1.039121748 1 21.364487 FS(ph)ISASY(ph)NLETILPK ddPTM_HeLa_A486_30min_R1 1 FSISASYNLETILPK 15 0 Q86WD7-5;Q86WD7-4;Q86WD7-2;Q86WD7-6;Q86WD7;Q86WD7-7 Q86WD7-5 SERPINA9 Serpin A9 2 0 FS(0.374)IS(0.409)AS(0.402)Y(0.5)NLET(0.315)ILPK 55.33 0.023582 45896000 198200 238880 131970 6002 144250 161370 104340 134770 185870 50506 TRUE FALSE FALSE 184307.2035 219950.2788 183072.3183 13972.95932 126156.8199 141461.8101 78233.0284 104085.813 201981.3613 37858.96886 4.868257352 5.809727138 4.835639316 0.369079237 3.33228357 3.73654683 2.066433153 2.74930396 5.335099379 1 15.2083475 -5.025828469 23.92790587 2.763673633 5.334915719 0.431055965 1.328767232 379.5330142 351606.2003 0.352252298 0.613583986 9.42E-06 5.025828469 2.571242086 FS(ph)LCSDNLEGISEGPSNR ddPTM_HeLa_A485_30min_R1 1 FSLCSDNLEGISEGPSNR 18 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;B4DGD8;A0A0A0MQV8 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 FS(0.967)LCS(0.033)DNLEGISEGPSNR 159.01 3.11E-09 56628000 49232 49051 56745 55083 64416 44747 60994 57243 46291 67450 TRUE FALSE FALSE 60183.48855 54787.08776 77737.33686 58092.04481 58002.51686 47089.88373 47962.13362 43204.0645 55581.17909 50635.95633 1.188552422 1.081979916 1.535220079 1.147248892 1.145480822 0.929969278 0.947195177 0.853228963 1.097662277 1 15.62787458 -6.011661116 2.211483003 0.954723972 1.251487522 0.515752128 0.125355881 0.247710768 2.429886165 0.045326656 0.049194096 9.74E-07 6.011661116 0.296763551 FS(ph)MPGFK ddPTM_HeLa_A486_30min_R1 2 FSMPGFK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FS(1)MPGFK;FS(1)MPGFK ; 68.371 0.022517 180739000 287200 288940 157113 170059 261980 337710 379890 363930 273220 435740 TRUE FALSE FALSE 267068.7631 266043.3421 217951.3612 395905.9463 229120.0255 296046.7738 284837.5039 281071.0835 296902.9296 326627.8678 0.817654553 0.814515136 0.667277298 1.212100942 0.701471148 0.906373286 0.872055118 0.86052389 0.908994482 1 18.31728836 -9.137758436 0.022032495 1.874952287 4.70E-06 0.108774434 0.137395738 1734.538257 10.77407179 497.9388258 418.7853561 7.28E-10 9.137758436 -1.874947589 FS(ph)PDDKYSR ddPTM_HeLa_A485_30min_R1 1 FSPDDKYSR 9 1 Q9NPE3 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 1 0 FS(1)PDDKYSR 82.171 0.003275 112200000 238490 187010 145700 396160 266890 176900 299850 210560 193820 551150 TRUE FALSE FALSE 291541.2777 208879.1927 199600.4931 417801.2177 240317.4945 186162.2105 235784.598 158919.8299 232717.8962 413758.4482 0.7046171 0.504833662 0.48240826 1.009770845 0.580815922 0.44992969 0.569860504 0.384088423 0.562448688 1 18.65842924 -10.05108021 4.729295009 1.000012901 0.580236076 0.365656098 0.164652543 54096315.85 57484934.48 6328.777934 0.041415985 8.89E-11 10.05108021 -0.419776825 FS(ph)PDDKYSR ddPTM_HeLa_A486_30min_R1 1 FSPDDKYSR 9 1 Q9NPE3 Q9NPE3 NOP10 H/ACA ribonucleoprotein complex subunit 3 1 0 FS(0.997)PDDKY(0.003)SR 71.153 0.0029139 0 194400 184070 77445 84694 131120 191640 232320 203790 138730 253800 TRUE FALSE FALSE 180773.5639 169483.6228 107433.778 197171.9122 114673.707 167997.4053 174191.0788 157391.4657 150755.2281 190246.828 0.950205403 0.890861754 0.564707329 1.036400524 0.60276278 0.883049704 0.915605693 0.827301392 0.792419141 1 17.53751287 FS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_A485_30min_R1 5 FSPGAPGGSGSQPNQK 16 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK ;;;; 316.79 2.41E-78 3392870000 2186736 1488739 1266979 2858030 2281869 1396168 2112300 1637021 1621975 3657100 TRUE FALSE FALSE 2673167.879 1662834.076 1735687.255 3014156.942 2054678.11 1469269.198 1660989.849 1235539.033 1947490.505 2745452.274 0.973671225 0.605668542 0.63220449 1.097872642 0.748393308 0.53516472 0.604996803 0.450031146 0.709351433 1 21.3886124 -6.011677125 24.11956545 0.624289873 0.813274316 0.130220655 0.192271944 633.2139343 1307931.622 0.060946907 0.064419234 9.73E-07 6.011677125 0.188984443 FS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_A486_30min_R1 5 FSPGAPGGSGSQPNQK 16 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK ;;;; 287.03 2.89E-59 3576016000 1425994 1633240 830759 618279 1205224 1767850 1882635 1706032 1339986 1701087 TRUE FALSE FALSE 1326039.184 1503816.114 1152451.133 1439384.758 1054053.568 1549750.641 1411579.811 1317605.756 1456137.065 1275123.743 1.039929804 1.179349159 0.903795525 1.128819666 0.826628453 1.215372743 1.107013981 1.033315992 1.141957456 1 20.28220583 FS(ph)PPRHELS(ph)PPQKR ddPTM_HeLa_A485_30min_R1 2 FSPPRHELSPPQKR 14 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 2 0 FS(1)PPRHELS(1)PPQKR;FS(1)PPRHELS(1)PPQKR ; 63.578 0.01363 1673310000 807870 733830 637770 1218560 1183940 761310 1215260 1164430 754140 1626480 TRUE FALSE FALSE 987577.8944 819645.035 873707.6628 1285126.847 1066062.777 801171.0144 955609.7732 878851.7167 905488.9806 1221028.469 0.808808246 0.671274303 0.715550607 1.0524954 0.87308593 0.656144418 0.782626939 0.719763494 0.741578926 1 20.21966541 -11.24127528 2.209991545 1.749645961 0.780438995 0.265772655 0.10962479 6136735.498 1048720.298 22984240.27 0.030496251 5.74E-12 11.24127528 -0.969206966 FS(ph)PPRHELS(ph)PPQKR ddPTM_HeLa_A486_30min_R1 4 FSPPRHELSPPQKR 14 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 2 0 FS(1)PPRHELS(1)PPQKR;FS(1)PPRHELS(1)PPQKR;FS(1)PPRHELS(1)PPQKR;FS(1)PPRHELS(1)PPQKR ;;; 78.794 0.0036296 2654550000 2410250 2844210 1674920 1355410 3057400 3307440 3840400 3794650 2355190 3430820 TRUE FALSE FALSE 2241303.922 2618824.441 2323493.88 3155462.979 2673912.383 2899401.68 2879491.3 2930691.032 2559339.766 2571720.341 0.871519304 1.018316183 0.903478439 1.226985271 1.039736841 1.127417174 1.119675127 1.139583875 0.995185878 1 21.29430234 -5.238541294 24.97443611 1.098840239 0.939825779 0.494646427 0.074489208 633.1434835 690554.6178 0.018892192 0.032693609 5.77E-06 5.238541294 -0.159014459 FS(ph)PTMGR ddPTM_HeLa_A485_30min_R1 8 FSPTMGR 7 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 FS(0.993)PT(0.007)MGR;FS(0.993)PT(0.007)MGR;FS(0.958)PT(0.042)MGR;FS(1)PTMGR;FS(0.5)PT(0.5)MGR;FS(0.999)PT(0.001)MGR;FS(0.979)PT(0.021)MGR;FS(0.994)PT(0.006)MGR ;;;;;;; 180.45 0.00025983 5081220000 2945170 3004810 2690667 3473620 3112970 2287054 2954370 2393520 2595970 4143990 TRUE FALSE FALSE 3600312.906 3356196.391 3686056.691 3663375.065 2803031.776 2406800.611 2323144.715 1806505.467 3116957.367 3110969.557 1.15729609 1.078826497 1.184857847 1.177566992 0.901015495 0.773649683 0.746759064 0.580688893 1.001924741 1 21.56893285 -5.896481324 3.546055857 0.792602506 1.147503793 0.626452646 0.11943209 0.142019209 3.47621416 0.037770713 0.043437055 1.27E-06 5.896481324 0.354901287 FS(ph)PTMGR ddPTM_HeLa_A486_30min_R1 8 FSPTMGR 7 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 FS(0.943)PT(0.057)MGR;FS(0.861)PT(0.139)MGR;FS(0.861)PT(0.139)MGR;FS(0.995)PT(0.005)MGR;FS(0.992)PT(0.008)MGR;FS(0.894)PT(0.106)MGR;FS(0.99)PT(0.01)MGR;FS(0.992)PT(0.008)MGR ;;;;;;; 179.17 0.00041943 5446480000 5553640 6407010 3829750 1607960 4634910 5431590 5502840 5247100 5085430 6114430 TRUE FALSE FALSE 5164358.515 5899295.194 5312731.764 3743412.142 4053556.369 4761495.65 4125971.229 4052449.873 5526239.167 4583336.93 1.126768246 1.287117941 1.159140566 0.816743826 0.884411605 1.038870963 0.900211198 0.884170188 1.205723963 1 22.12796691 -5.10239677 6.248932299 0.9547394 1.210787532 0.488014341 0.108230713 0.179918542 9.225549484 0.029056701 0.051179546 7.90E-06 5.10239677 0.256048131 FS(ph)PVLGR ddPTM_HeLa_A485_30min_R1 10 FSPVLGR 7 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR ;;;;;;;;; 194.22 0.00029655 13263184000 6169028 6367252 6035642 7703697 7935180 5941561 8586740 7224372 5527832 9890270 TRUE FALSE FALSE 7541306.996 7111846.734 8268477.14 8124530.46 7145125.617 6252651.947 6752112.852 5452583.44 6637217.178 7424807.706 1.015690546 0.957849282 1.113628456 1.094241195 0.962331403 0.842129816 0.90939902 0.734373691 0.893924454 1 22.82392223 -6.046125064 3.748821081 0.862389151 1.04359268 0.532341029 0.074120888 0.173371221 5.018400513 0.024962618 0.026108238 8.99E-07 6.046125064 0.181203529 FS(ph)PVLGR ddPTM_HeLa_A486_30min_R1 10 FSPVLGR 7 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR;FS(1)PVLGR ;;;;;;;;; 182.73 0.0003007 15522961000 8692140 9791800 6687120 3426884 9004030 9278220 11062060 10153590 8201550 10693960 TRUE FALSE FALSE 8082865.872 9015862.107 9276551.951 7977959.137 7874660.598 8133567.55 8294215.585 7841839.208 8912466.958 8016122.81 1.008326103 1.124716065 1.157236755 0.995239136 0.982352789 1.014651066 1.034691681 0.978258367 1.111817667 1 22.93447318 -5.27833767 24.7980085 1.015041081 1.099555288 0.348476805 0.050074778 744.999225 1093274.394 0.013924312 0.020724317 5.27E-06 5.27833767 0.084514207 FS(ph)PVTPK ddPTM_HeLa_A485_30min_R1 5 FSPVTPK 7 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 FS(1)PVTPK;FS(1)PVTPK;FS(1)PVTPK;FS(1)PVTPK;FS(1)PVTPK ;;;; 166.61 0.00044053 9478590000 19551600 13837720 10937540 27347100 19128500 13394820 22170900 16136700 14363600 33415400 TRUE FALSE FALSE 23900785.97 15455920.98 14983791.2 28841002.83 17223999.38 14096152.06 17433906.1 12179149.02 17246242.77 25085555.74 0.952770838 0.616128307 0.597307524 1.149705556 0.686610237 0.561923053 0.69497787 0.485504453 0.687496938 1 24.58035356 -5.978065271 24.99797852 0.65103998 0.812342979 0.09940254 0.194589444 491.1563887 559745.06 0.059479761 0.067439019 1.05E-06 5.978065271 0.161302999 FS(ph)PVTPK ddPTM_HeLa_A486_30min_R1 4 FSPVTPK 7 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 FS(1)PVTPK;FS(1)PVTPK;FS(0.999)PVT(0.001)PK;FS(1)PVTPK ;;; 152.86 0.00074835 10279900000 19490700 21727600 9910620 9329740 16052600 23812900 27517900 25719900 16728100 26498700 TRUE FALSE FALSE 18124502.58 20005825.85 13748277.48 21720106.22 14039133.22 20875106.51 20632630.37 19864040.23 18178105.18 19863253.04 0.912463963 1.007177717 0.692146319 1.093481827 0.706789225 1.050940975 1.038733702 1.00003963 0.915162544 1 24.24359858 FS(ph)QAAK ddPTM_HeLa_A485_30min_R1 2 FSQAAK 6 0 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 FS(1)QAAK;FS(1)QAAK ; 68.787 0.02947 240881000 248600 634330 1021420 66949 406940 474610 206559 355870 611390 98424 TRUE FALSE FALSE 303900.2123 708509.3756 1399285.763 70606.25435 366423.6247 499459.8457 162425.9822 268592.3245 734090.365 73888.70816 4.112945265 9.588872146 18.93774837 0.955575704 4.959128856 6.759623468 2.198251753 3.635092983 9.935081872 1 16.17306628 -5.29508043 24.99992933 4.370015205 10.75076598 0.344218172 4.215883662 713.9629361 530571.1656 1.188274134 1.762605285 5.07E-06 5.29508043 6.380750771 FS(ph)QIQPK ddPTM_HeLa_A485_30min_R1 1 FSQIQPK 7 0 Q86V21-2;Q86V21 Q86V21-2 AACS Acetoacetyl-CoA synthetase 1 0 FS(1)QIQPK 56.729 0.031655 393430000 323740 662170 829720 136050 732030 573290 435140 568300 635010 183930 TRUE FALSE FALSE 395754.8461 739605.0214 1136667.956 143482.067 659146.5229 603306.5779 342168.7842 428923.5339 762450.6823 138079.636 2.866134773 5.356365666 8.231973871 1.039125473 4.773669326 4.369265414 2.478053927 3.106348962 5.521818456 1 17.07514104 -5.268797227 24.99970045 3.358007718 5.471978887 0.243346413 1.841337877 856.9355216 2911602.666 0.509333662 0.773004962 5.39E-06 5.268797227 2.113971169 FS(ph)QIQPK ddPTM_HeLa_A486_30min_R1 1 FSQIQPK 7 0 Q86V21-2;Q86V21 Q86V21-2 AACS Acetoacetyl-CoA synthetase 1 0 FS(1)QIQPK 57.598 0.030466 616950000 808040 1214300 1597800 48518 1816100 607880 409170 680920 1138500 141710 TRUE FALSE FALSE 751400.5687 1118074.446 2216510.951 112952.356 1588307.804 532885.9461 306791.3382 525889.3804 1237186.097 106224.8936 7.073676829 10.52554074 20.86621012 1.063332258 14.95231249 5.016582534 2.888130341 4.950716941 11.64685654 1 16.69676237 -6.292440422 23.39704805 5.209103989 10.88323899 0.22326849 5.403150273 503.5347607 380024.4653 1.863868111 1.644040064 5.10E-07 6.292440422 5.674134996 FS(ph)RS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 FSRSPIR 7 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 FS(1)RS(1)PIR 66.056 0.028457 553850000 76013 75360 44108 30482 62906 79548 91555 71502 69365 102290 TRUE FALSE FALSE 70684.88123 69388.19914 61187.79885 70963.63647 55015.7429 69734.17654 68646.97063 55222.55548 75377.61405 76675.9182 0.921865468 0.904954264 0.798005427 0.925500967 0.717510063 0.909466468 0.895287233 0.720207293 0.983067641 1 16.22648592 -7.936174383 13.97958647 0.999998267 0.850978689 0.365304654 0.07523111 1.125476217 244.5108673 0.069383064 0.017915741 1.16E-08 7.936174383 -0.149019579 FS(ph)SLGR ddPTM_HeLa_A485_30min_R1 1 FSSLGR 6 0 Q96DR7-3;Q96DR7-4;Q96DR7 Q96DR7-3 ARHGEF26 Rho guanine nucleotide exchange factor 26 1 0 FS(0.647)S(0.353)LGR 94.262 0.014252 93846000 167220 169310 151840 156390 232250 168830 231520 240330 151020 200090 TRUE FALSE FALSE 204417.5121 189109.3317 208011.9346 164933.1897 209126.3745 177669.6777 182053.8607 181388.6907 181328.3288 150211.2454 1.360866902 1.258955887 1.384796019 1.09800827 1.39221517 1.18279878 1.211985562 1.207557332 1.207155485 1 17.1966333 -14 0.097080713 0.162055172 1.441799348 0.534532062 0.081339249 146.3099896 0.970831772 24.80119592 1.419331457 1.00E-14 14 1.279744176 FS(ph)SLGR ddPTM_HeLa_A486_30min_R1 1 FSSLGR 6 0 Q96DR7-3;Q96DR7-4;Q96DR7 Q96DR7-3 ARHGEF26 Rho guanine nucleotide exchange factor 26 1 0 FS(0.654)S(0.346)LGR 94.662 0.014104 101670000 251470 241050 199030 86792 289370 260360 290660 283170 221780 267370 TRUE FALSE FALSE 233843.2516 221948.3201 276099.7462 202056.1622 253074.5163 228239.4303 217933.7937 218698.3726 241004.069 200418.8117 1.166772967 1.107422593 1.377613927 1.008169645 1.262728355 1.138812412 1.087391906 1.091206812 1.202502235 1 17.6126584 -14 0.142502892 0.437867827 1.214750627 0.207109638 0.097199049 213.0838659 1.844017913 33.82892743 0.546160933 1.00E-14 14 0.7768828 FSAS(ph)SGGGGSR ddPTM_HeLa_A485_30min_R1 1 FSASSGGGGSR 11 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5;H0YD99;H0YEN8;H0YDC0;H0YCF8;H0YEC5;H0YD77 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 FSAS(0.618)S(0.382)GGGGSR 120.03 0.00018084 388500000 440800 527280 477400 432320 709390 511970 662390 719430 431420 569560 TRUE FALSE FALSE 538854.4393 588940.8093 654010.1263 455936.5469 638760.6408 538775.9575 520864.9653 542988.6645 518002.0368 427579.174 1.26024482 1.377384225 1.52956497 1.066320753 1.493900264 1.260061271 1.218171971 1.269913732 1.211476303 1 18.70583206 -8.773807128 0.308627493 0.925569284 1.370022138 0.39345315 0.123069473 4.359671438 0.72023342 0.570108769 0.146308497 1.68E-09 8.773807128 0.444452854 FSASS(ph)GGGGSR ddPTM_HeLa_A486_30min_R1 1 FSASSGGGGSR 11 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5;H0YD99;H0YEN8;H0YDC0;H0YCF8;H0YEC5;H0YD77 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 FS(0.005)AS(0.243)S(0.751)GGGGSR 77.74 0.0048963 0 325610 359450 298320 140170 412080 317770 381850 387670 270520 347910 TRUE FALSE FALSE 302786.4205 330965.8729 413837.4933 326322.8438 360393.0839 278566.7682 286307.0912 299406.0038 293968.8914 260791.0715 1.161030624 1.269084371 1.58685453 1.251280736 1.381922632 1.06816068 1.097840849 1.14806846 1.127219923 1 17.99253495 -6.26369294 24.97913531 1.098111183 1.336541021 0.545447021 0.110093564 165.6436504 1836033.209 0.038684913 0.035770509 5.45E-07 6.26369294 0.238429839 FSAYIK ddPTM_HeLa_A485_30min_R1 2 FSAYIK 6 0 A0A2R8Y4M1;A0A5F9ZHK1;A0A2R8YGW2;A0A2R8Y615;Q9NZA1-3;Q9NZA1-2;Q9NZA1;A6PVS0;O00299;O15247;Q9Y696 A0A2R8Y4M1;O00299;O15247;Q9Y696 CLIC5;CLIC2;CLIC1;CLIC4 Chloride intracellular channel protein 5;Chloride intracellular channel protein 1;Chloride intracellular channel protein 2;Chloride intracellular channel protein 4 0 0 ; ; 137.5 0.013354 171940000 272010 321120 262820 286760 401720 336890 459420 494330 289210 417220 FALSE FALSE TRUE 332517.6861 358672.1906 360048.0549 302424.9727 361723.3463 354529.0395 361261.1639 373094.7924 347251.7942 313214.7324 1.061628499 1.145131929 1.149524648 0.965551558 1.154873347 1.131904099 1.153397738 1.191178938 1.108670054 1 18.25679255 FSAYIK ddPTM_HeLa_A486_30min_R1 2 FSAYIK 6 0 A0A2R8Y4M1;A0A5F9ZHK1;A0A2R8YGW2;A0A2R8Y615;Q9NZA1-3;Q9NZA1-2;Q9NZA1;A6PVS0;O00299;O15247;Q9Y696 A0A2R8Y4M1;O00299;O15247;Q9Y696 CLIC5;CLIC2;CLIC1;CLIC4 Chloride intracellular channel protein 5;Chloride intracellular channel protein 1;Chloride intracellular channel protein 2;Chloride intracellular channel protein 4 0 0 ; ; 126.68 0.01784 135307000 322870 330590 228200 120306 363100 342100 401580 377760 291950 383250 FALSE FALSE TRUE 300238.4803 304392.8444 316565.1514 280078.4479 317556.6122 299895.1802 301100.4365 291752.2944 317256.4611 287281.7055 1.045101288 1.05956223 1.10193286 0.974926153 1.10538404 1.043906293 1.048101674 1.01556169 1.104339243 1 18.1321066 -10.37157316 3.431480489 0.999624636 1.054288863 0.151304992 0.039296617 4201392.294 4285190.737 10222.1843 0.008868285 4.25E-11 10.37157316 0.054664227 FSCPPNFTAKPPAS(ph)ESPR ddPTM_HeLa_A485_30min_R1 1 FSCPPNFTAKPPASESPR 18 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 FSCPPNFT(0.01)AKPPAS(0.495)ES(0.495)PR 70.352 0.0032103 462680000 158950 175490 139900 203740 245840 198160 287790 303590 173940 289480 TRUE FALSE FALSE 194307.8791 196012.0289 191654.8317 214869.8003 221363.3064 208535.3512 226301.3155 229134.0765 208848.1625 217317.9635 0.894117891 0.901959625 0.881909754 0.988734649 1.018614857 0.959586349 1.041337365 1.054372463 0.961025767 1 17.72944791 -5.332261353 4.388732199 1.007509826 0.893340914 0.756832624 0.028820455 0.10416109 3.876603927 0.00835594 0.01289593 4.65E-06 5.332261353 -0.114168913 FSCPPNFTAKPPASES(ph)PR ddPTM_HeLa_A485_30min_R1 1 FSCPPNFTAKPPASESPR 18 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 FSCPPNFTAKPPAS(0.004)ES(0.996)PR 188.39 2.64E-18 465970000 266590 258870 204220 306210 372950 284020 369830 432050 263230 422150 TRUE FALSE FALSE 325892.0258 289142.5946 279769.4763 322937.4769 335817.7885 298890.848 290812.7993 326089.0601 316057.8465 316915.7741 1.028323777 0.912364162 0.882788107 1.019000957 1.059643653 0.943123923 0.917634347 1.028945501 0.997292885 1 18.27373994 -5.282791479 24.79953267 0.993594634 0.938279215 0.186379605 0.051466962 1231.015837 1429768.975 0.015309246 0.022734078 5.21E-06 5.282791479 -0.055315419 FSCPPNFTAKPPASES(ph)PR ddPTM_HeLa_A486_30min_R1 2 FSCPPNFTAKPPASESPR 18 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 FSCPPNFTAKPPAS(0.02)ES(0.98)PR;FSCPPNFTAKPPAS(0.011)ES(0.989)PR ; 159.59 5.57E-10 1023770000 544850 594320 371850 223730 616380 556590 685700 685570 458370 611070 TRUE FALSE FALSE 506658.8286 547223.9187 515840.2785 520854.7467 539067.8729 487923.5848 514130.6074 529480.6769 498101.8807 458054.0946 1.106111341 1.194670946 1.126155807 1.137103134 1.176865089 1.065209526 1.122423341 1.155934819 1.087430254 1 18.80515846 -14 0.190465632 0.417934116 1.156652903 0.574620205 0.035130973 96.18479932 0.941188585 21.14554356 0.093206176 1.00E-14 14 0.738718787 FSDS(ph)EGEETVPEPR ddPTM_HeLa_A485_30min_R1 2 FSDSEGEETVPEPR 14 0 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 0 FSDS(1)EGEETVPEPR;FSDS(1)EGEETVPEPR ; 280.23 7.50E-68 0 123342 116541 104932 147947 151146 100482 141891 142948 113701 237340 TRUE FALSE FALSE 150779.0024 130169.4562 143750.7134 156028.97 136097.3735 105743.0821 111574.8287 107889.7789 136519.7478 178175.5059 0.846238666 0.730568747 0.806792789 0.875703813 0.76383885 0.593477098 0.626207447 0.605525312 0.766209402 1 17.4429395 -4.259310947 23.08889824 0.736766113 0.84623876 0.038993577 0.120464458 210.7452035 2285623.709 0.030909656 0.195589212 5.50E-05 4.259310947 0.109472647 FSEGVLQS(ph)PSQDQEK ddPTM_HeLa_A485_30min_R1 3 FSEGVLQSPSQDQEK 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 FSEGVLQS(0.929)PS(0.071)QDQEK;FSEGVLQS(0.576)PS(0.424)QDQEK;FSEGVLQS(0.907)PS(0.093)QDQEK ;; 274.6 3.41E-58 555926000 405815 347473 272795 533611 524260 396909 611449 581310 346766 730704 TRUE FALSE FALSE 496087.1467 388106.9447 373713.2224 562760.8178 472062.8336 417690.5415 480807.9261 438742.811 416358.7555 548552.9404 0.904356007 0.707510463 0.681271022 1.025900649 0.86056021 0.761440712 0.876502322 0.799818538 0.759012895 1 19.06527134 -11.33632104 2.148382075 1.956342509 0.818885952 0.237918125 0.096854163 6864531.248 713590.0855 31961974.06 0.024679036 4.61E-12 11.33632104 -1.137456557 FSEGVLQS(ph)PSQDQEK ddPTM_HeLa_A486_30min_R1 2 FSEGVLQSPSQDQEK 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 FSEGVLQS(0.936)PS(0.064)QDQEK;FSEGVLQS(0.798)PS(0.202)QDQEK ; 224.33 1.05E-33 467280000 824180 668980 430510 315850 669270 844120 1026700 972670 666020 1150310 TRUE FALSE FALSE 766409.2381 615967.5884 597215.0015 735314.7622 585323.9159 739981.0568 769808.8007 751214.2742 723751.1499 862264.8887 0.88883271 0.714360049 0.692611991 0.852771314 0.678821466 0.858182986 0.892775307 0.871210557 0.839360572 1 19.71777161 -6.455858899 7.309031511 0.888180167 0.763492931 0.433870905 0.073139866 0.272721172 26.15037667 0.024934315 0.021847215 3.50E-07 6.455858899 -0.124687236 FSEGVLQSPS(ph)QDQEK ddPTM_HeLa_A485_30min_R1 1 FSEGVLQSPSQDQEK 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 FSEGVLQS(0.181)PS(0.819)QDQEK 123.42 3.46E-05 0 124440 95861 76035 152620 123820 105470 171120 151120 86129 198670 TRUE FALSE FALSE 152121.2487 107071.1101 104163.5106 160957.2441 111492.046 110992.2461 134558.8141 114057.5831 103414.3003 149145.2253 1.019953863 0.717898343 0.698403254 1.079198103 0.747540163 0.744189068 0.902199945 0.764741767 0.693379893 1 17.18635827 FSEGVLQSPS(ph)QDQEK ddPTM_HeLa_A486_30min_R1 2 FSEGVLQSPSQDQEK 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 FSEGVLQS(0.325)PS(0.675)QDQEK;FSEGVLQS(0.2)PS(0.8)QDQEK ; 183.7 8.04E-18 437510000 515740 437000 258640 243010 459650 530200 656080 566050 380380 753340 TRUE FALSE FALSE 479589.2893 402370.5285 358792.3346 565739.561 401996.4109 464789.3147 491921.8447 437172.7718 413351.6447 564698.7606 0.84928341 0.71254013 0.635369439 1.001843107 0.711877622 0.823074792 0.871122586 0.77416988 0.731986102 1 19.10712194 -10.91017853 2.340650848 1.129321118 0.790111726 0.292882483 0.097824654 23396693.42 11337377.82 16612083.19 0.026341452 1.23E-11 10.91017853 -0.339209392 FSELEHLDRLS(ph)GR ddPTM_HeLa_A485_30min_R1 1 FSELEHLDRLSGR 13 1 P37173;P37173-2 P37173 TGFBR2 TGF-beta receptor type-2 1 0 FSELEHLDRLS(1)GR 99.044 0.00043029 88137000 60235 78783 68232 51652 79163 64945 94237 88077 55890 90902 TRUE FALSE FALSE 73634.06794 87995.98653 93473.85617 54473.61797 71281.25376 68345.41978 74102.4951 66475.97765 67106.61035 68241.80433 1.079017014 1.289473328 1.369744793 0.798244104 1.044539406 1.001518357 1.08588124 0.974123974 0.983365124 1 16.05836817 -5.251444847 24.99996439 0.990378314 1.250417872 0.603321375 0.097284325 473.7166837 1184935.68 0.026362884 0.044972123 5.60E-06 5.251444847 0.260039559 FSELEHLDRLS(ph)GR ddPTM_HeLa_A486_30min_R1 2 FSELEHLDRLSGR 13 1 P37173;P37173-2 P37173 TGFBR2 TGF-beta receptor type-2 1 0 FSELEHLDRLS(1)GR;FSELEHLDRLS(1)GR ; 107.34 0.0001786 108830000 118173 110632 96070 24239 120418 100073 102010 106059 118481 122941 TRUE FALSE FALSE 109889.6829 101865.1174 133270.8768 56429.61697 105314.0516 87727.01073 76486.01905 81911.68095 128751.0285 92155.77339 1.192434059 1.105357957 1.446147886 0.612328614 1.142783004 0.951942646 0.829964486 0.888839385 1.397102143 1 16.49178693 -5.239856588 24.96300167 0.970100379 1.233717719 0.26587206 0.207586805 1117.18858 1292156.183 0.05472832 0.094680432 5.76E-06 5.239856588 0.26361734 FSESES(ph)RSPLEDETDNTWMFK ddPTM_HeLa_A486_30min_R1 1 FSESESRSPLEDETDNTWMFK 21 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 FS(0.057)ES(0.052)ES(0.445)RS(0.445)PLEDETDNTWMFK 84.946 0.00082442 37792000 23173 31920 23182 12625 39936 27103 28812 34658 27371 27932 TRUE FALSE FALSE 21548.69237 29390.54295 32158.69124 29391.63803 34926.85449 23759.30742 21602.93286 26767.12998 29743.54032 20937.64539 1.02918413 1.403717677 1.535926826 1.403769979 1.66813669 1.134765012 1.031774703 1.278421211 1.420577136 1 14.35381159 -6.310151985 24.99925711 1.18167555 1.414757098 0.280988641 0.187590801 554.3651224 284497.8709 0.067803603 0.059797267 4.90E-07 6.310151985 0.233081548 FSFGLLDLPFR ddPTM_HeLa_A486_30min_R1 1 FSFGLLDLPFR 11 0 A6NHR9;J3KTL8;A6NHR9-2 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 0 0 97.565 0.018361 10436000 11567 16146 16263 6196.9 20311 16444 20622 19785 14528 16460 FALSE FALSE TRUE 10756.21303 14866.53216 22560.46914 14426.69637 17763.40499 14415.30647 15462.15748 15280.3874 15787.29874 12338.30886 0.871773689 1.204908413 1.828489576 1.169260434 1.439695276 1.168337301 1.253182884 1.238450713 1.279535057 1 13.59085705 -6.294147748 24.66687528 1.20688446 1.319168984 0.050457631 0.237134945 2082.528106 1570522.992 0.085530409 0.075436438 5.08E-07 6.294147748 0.112284524 FSFLSKPVDENHQQDGDEDS(ph)LVSHFYTNPIAKPIPQTPESAGNK ddPTM_HeLa_A485_30min_R1 1 FSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNK 44 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 FSFLSKPVDENHQQDGDEDS(0.5)LVS(0.5)HFYTNPIAKPIPQTPESAGNK 123.84 2.94E-08 131220000 66132 36454 27965 71558 57748 43481 102910 68556 36634 97137 TRUE FALSE FALSE 80842.83525 40716.97819 38310.41722 75467.03235 51998.40635 45757.59793 80922.4378 51742.53351 43986.10777 72922.53357 1.108612541 0.558359347 0.525357737 1.034893176 0.713063628 0.627482284 1.109704145 0.709554797 0.603189517 1 16.15407707 FSFLSKPVDENHQQDGDEDS(ph)LVSHFYTNPIAKPIPQTPESAGNK ddPTM_HeLa_A486_30min_R1 1 FSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNK 44 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 FSFLSKPVDENHQQDGDEDS(0.485)LVS(0.485)HFY(0.025)T(0.006)NPIAKPIPQTPESAGNK 102.05 3.83E-06 190420000 92832 98337 39131 40911 78582 114360 115910 132860 74495 125200 TRUE FALSE FALSE 86324.95618 90544.41798 54283.57116 95242.87553 68725.51281 100251.4259 86908.09203 102610.6783 80952.28658 93849.10508 0.919827164 0.964787228 0.578413306 1.014851185 0.732298009 1.068219306 0.926040711 1.09335809 0.862579206 1 16.51805537 -6.26986689 24.9559372 0.99187442 0.843810132 0.243772011 0.13030133 906.93372 2685647.127 0.043496408 0.03896392 5.37E-07 6.26986689 -0.148064288 FSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQT(ph)PESAGNK ddPTM_HeLa_A485_30min_R1 1 FSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNK 44 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 FSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQT(0.998)PES(0.002)AGNK 241.85 2.04E-52 613880000 152910 81923 56381 186840 129400 116950 192350 144740 123480 275620 TRUE FALSE FALSE 186924.302 91503.18221 77238.67811 197046.5961 116516.4816 123073.3212 151252.8511 109242.2881 148261.3034 206913.0064 0.903395612 0.44223021 0.373290589 0.952316142 0.563118209 0.59480708 0.73099731 0.527962403 0.716539313 1 17.65866481 -8.024671041 20.90820432 1.00000001 0.630175377 0.279830589 0.174956362 314.4545288 266495.5589 0.164419379 0.042452901 9.45E-09 8.024671041 -0.369824633 FSFRS(ph)QEDLNEPIKR ddPTM_HeLa_A485_30min_R1 1 FSFRSQEDLNEPIKR 15 2 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 FSFRS(1)QEDLNEPIKR 140.95 3.96E-07 221900000 36471 66145 44129 43821 99899 93725 135040 214070 57523 71681 TRUE FALSE FALSE 44583.84813 73880.08236 60454.15346 46214.83027 89952.70479 98632.29607 106187.6008 161568.9969 69067.33847 53812.24589 0.828507478 1.372923229 1.123427437 0.858816232 1.671602872 1.832896852 1.973298068 3.00245779 1.28348738 1 15.7156469 -5.935843341 3.698235635 1.941427885 1.076442149 0.322241206 0.516640356 0.244534482 6.786855647 0.164064192 0.185237931 1.16E-06 5.935843341 -0.864985735 FSFYGNLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 FSFYGNLSPR 10 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 FSFYGNLS(1)PR;FSFYGNLS(1)PR ; 122.33 0.00015835 106301000 191099 203596 204925 239711 277360 229600 308554 278929 185089 397000 TRUE FALSE FALSE 233608.3133 227404.7812 280735.2851 252805.8049 249745.0645 241621.501 242628.9172 210521.2254 222234.6646 298035.2062 0.783827912 0.763013149 0.941953431 0.848241415 0.837971687 0.810714627 0.814094819 0.706363614 0.745665814 1 18.18512324 -6.556316782 2.387800328 0.791830886 0.8373754 0 0.085238359 1.035464318 11.93197114 0.0364122 0.027730287 2.78E-07 6.556316782 0.045544514 FSFYGNLS(ph)PR ddPTM_HeLa_A486_30min_R1 3 FSFYGNLSPR 10 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 FSFYGNLS(1)PR;FSFYGNLS(1)PR;FSFYGNLS(1)PR ;; 101.57 0.0014586 87179000 502800 621060 376940 321830 586680 729460 815250 875640 519400 723130 TRUE FALSE FALSE 467556.3165 571844.9437 522901.2628 749236.5044 513093.1238 639466.6418 611265.8272 676275.8871 564422.0102 542053.5412 0.862564822 1.054960258 0.964667183 1.382218632 0.946572773 1.179711215 1.127685331 1.247618244 1.041266162 1 19.04807583 -4.297110956 1.283672545 1.132513118 0.769616081 0.264258099 0.126806317 1.655928634 2.498078587 0.035660624 0.779624838 5.05E-05 4.297110956 -0.362897037 FSGEEGEIEDDES(ph)GTENR ddPTM_HeLa_A485_30min_R1 2 FSGEEGEIEDDESGTENR 18 0 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(1)GTENR;FSGEEGEIEDDES(0.998)GT(0.002)ENR ; 474.84 2.51E-250 2063030000 1630520 1681220 1195990 1541990 1060650 1162120 1266900 875950 1128920 1677310 TRUE FALSE FALSE 1993223.549 1877824.054 1638436.47 1626225.009 955047.9618 1222966.806 996216.4654 661121.8891 1355483.889 1259187.486 1.582944217 1.491298219 1.301185478 1.291487588 0.75846367 0.97123488 0.791158169 0.525038484 1.076475032 1 20.26406168 -5.456191528 1.288545922 0.818133343 1.537085704 0.739284619 0.163775246 0.218002153 0.726395679 0.057644887 0.114616664 3.50E-06 5.456191528 0.718952361 FSGEEGEIEDDES(ph)GTENR ddPTM_HeLa_A486_30min_R1 3 FSGEEGEIEDDESGTENR 18 0 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.977)GT(0.023)ENR;FSGEEGEIEDDES(0.994)GT(0.006)ENR;FSGEEGEIEDDES(0.989)GT(0.011)ENR ;; 219.97 2.30E-34 2477560000 1574030 1931880 924230 381792 954280 1453880 1189620 1085070 1490400 1856130 TRUE FALSE FALSE 1463698.625 1778790.793 1282116.608 888831.0707 834585.3041 1274515.068 891964.4935 838023.2479 1619589.072 1391342.967 1.052004186 1.278470396 0.921495734 0.6388296 0.599841537 0.916032278 0.641081685 0.602312491 1.164047335 1 20.40804666 -4.95648893 5.057570985 0.76876669 1.159559881 0.376787871 0.186362774 0.173074419 10.25979805 0.04802574 0.101837256 1.11E-05 4.95648893 0.390793191 FSGEEGEIEDDES(ph)GTENREEK ddPTM_HeLa_A485_30min_R1 2 FSGEEGEIEDDESGTENREEK 21 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.964)GT(0.036)ENREEK;FSGEEGEIEDDES(0.997)GT(0.003)ENREEK ; 192.18 6.29E-20 1719370000 615870 502030 420950 970080 579560 461910 757760 607030 503780 1311090 TRUE FALSE FALSE 752868.1568 560738.0414 576676.9222 1023073.014 521856.9714 486094.8934 595858.3857 458154.9407 604884.0251 984259.3918 0.764908278 0.569705553 0.585899334 1.039434343 0.530202684 0.493868687 0.605387554 0.465481909 0.614557534 1 19.90867905 -9.910503772 4.267672553 1.000008138 0.626421109 0.331850523 0.157457933 72038719.7 154840029.4 9169.747698 0.040618296 1.23E-10 9.910503772 -0.373587029 FSGEEGEIEDDES(ph)GTENREEK ddPTM_HeLa_A486_30min_R1 2 FSGEEGEIEDDESGTENREEK 21 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.972)GT(0.028)ENREEK;FSGEEGEIEDDES(0.973)GT(0.027)ENREEK ; 193.19 4.95E-20 1171500000 881450 991410 465940 378190 697010 1125170 1133230 992960 845760 1344780 TRUE FALSE FALSE 819664.9068 912847.0609 646364.4463 880445.4327 609584.5064 986357.9653 849683.8679 766884.6842 919071.1578 1008038.335 0.813128706 0.905567804 0.641210184 0.873424554 0.604723536 0.978492515 0.842908289 0.760769365 0.911742268 1 19.94311907 -6.289663615 24.99926138 0.880338415 0.774131418 0.262191363 0.107545178 1245.541023 1103218.215 0.036900065 0.032548387 5.13E-07 6.289663615 -0.106206997 FSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_A485_30min_R1 2 FSGEEGEIEDDESGTENREEKDNIQPTTE 29 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.982)GT(0.018)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.995)GT(0.005)ENREEKDNIQPTTE ; 271.58 3.48E-77 3887500000 1267260 771380 956510 2350720 1791830 1205300 1921600 1494150 1256600 3081500 TRUE FALSE FALSE 1549157.615 861586.1809 1310362.853 2479133.881 1613429.114 1268407.644 1511034.462 1127707.37 1508788.094 2313338.761 0.669663104 0.37244272 0.566437945 1.071669192 0.697446107 0.54830173 0.653183393 0.487480428 0.652212343 1 21.14154512 -10.6343405 2.341330212 1.05093421 0.633925639 0.285484791 0.173015102 5231190.333 3993031.748 1609030.678 0.048175361 2.32E-11 10.6343405 -0.417008571 FSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_A486_30min_R1 3 FSGEEGEIEDDESGTENREEKDNIQPTTE 29 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.995)GT(0.005)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.998)GT(0.002)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.999)GT(0.001)ENREEKDNIQPTTE ;; 282.27 1.40E-77 5246770000 2634470 2902800 1556620 1616190 3033590 3874750 4673400 4190120 2619840 3857850 TRUE FALSE FALSE 2449807.257 2672771.556 2159384.952 3762571.998 2653088.855 3396722.741 3504065.89 3236121.146 2846929.841 2891819.25 0.847150892 0.924252633 0.746721965 1.301108981 0.917446295 1.174597182 1.211716773 1.119060656 0.984477104 1 21.46354595 -5.24821826 24.99706266 1.106168416 0.847862907 0.521463639 0.114783695 615.8472834 1164375.43 0.030053058 0.05164746 5.65E-06 5.24821826 -0.258305509 FSGWYDADLS(ph)PAGHEEAK ddPTM_HeLa_A485_30min_R1 2 FSGWYDADLSPAGHEEAK 18 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 1 0 FSGWYDADLS(1)PAGHEEAK;FSGWYDADLS(1)PAGHEEAK ; 143.95 1.13E-09 114360000 350830 300234 252871 461900 385360 374220 525340 554630 269537 591440 TRUE FALSE FALSE 428870.9232 335343.7546 346418.5057 487132.4274 346992.2053 393813.5805 413096.8174 418606.1229 323630.6036 444004.8926 0.965914859 0.755270404 0.780213262 1.097133017 0.781505364 0.88695775 0.930387985 0.942796194 0.728889724 1 18.76021605 -11.44394923 2.359249632 2.384198126 0.875925582 0.106655212 0.109015405 4620499.739 1671573.845 33270872.91 0.026486626 3.60E-12 11.44394923 -1.508272543 FSGWYDADLS(ph)PAGHEEAK ddPTM_HeLa_A486_30min_R1 2 FSGWYDADLSPAGHEEAK 18 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 1 0 FSGWYDADLS(1)PAGHEEAK;FSGWYDADLS(1)PAGHEEAK ; 217.82 1.94E-34 225320000 179283 211522 128338 91795 223951 287623 323110 286748 211717 334690 TRUE FALSE FALSE 166716.1875 194760.2264 178033.9106 213703.3991 195860.9773 252138.9986 242264.4605 221461.7401 230068.8 250881.4455 0.664521791 0.776303827 0.709633629 0.851810299 0.780691362 1.005012539 0.965653159 0.88273463 0.91704191 1 17.93664625 -5.740389597 1.132048655 0.946740845 0.714372252 0.747627904 0.057174626 0.253998888 0.689248648 0.024150343 0.036785464 1.82E-06 5.740389597 -0.232368593 FSGWYDADLS(ph)PAGHEEAKR ddPTM_HeLa_A485_30min_R1 1 FSGWYDADLSPAGHEEAKR 19 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 1 0 FSGWYDADLS(1)PAGHEEAKR 84.689 0.00094863 79526000 60578 52872 47963 68676 87494 69284 100880 114540 50920 86028 TRUE FALSE FALSE 74053.36711 59054.92047 65706.50961 72427.59598 78782.79015 72911.60311 79326.16389 86448.88541 61139.17693 64582.80283 1.1466422 0.91440628 1.017399474 1.121468763 1.219872578 1.128963128 1.228286175 1.338574382 0.946678903 1 15.97886243 -5.359732502 3.74559564 1.164405322 1.014564237 0.148945537 0.118718391 0.340155895 8.72862502 0.033130376 0.051525217 4.37E-06 5.359732502 -0.149841085 FSGWYDADLS(ph)PAGHEEAKR ddPTM_HeLa_A486_30min_R1 2 FSGWYDADLSPAGHEEAKR 19 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 1 0 FSGWYDADLS(1)PAGHEEAKR;FSGWYDADLS(1)PAGHEEAKR ; 115.55 2.90E-05 176783000 135438.4 150864.6 116600.7 44364.1 202704.5 163673 153805 129279 162999.4 115990.8 TRUE FALSE FALSE 125944.8676 138909.5397 161751.6137 103281.8668 177279.4115 143480.6894 115321.3622 99844.99384 177128.3192 86945.94871 1.448542105 1.597653965 1.86036976 1.187885904 2.038961149 1.650228579 1.326356937 1.148357058 2.037223377 1 16.40783119 -10.92577134 2.672394834 0.633143294 1.579310289 0.251455892 0.304194526 38997920.27 23072953.11 89474815.89 0.075528742 1.19E-11 10.92577134 0.946166995 FSGWYDADLSPAGHEEAKR ddPTM_HeLa_A485_30min_R1 2 FSGWYDADLSPAGHEEAKR 19 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 0 ; ; 84.035 0.00073192 11844200 24481 29102 26507 24395 47390 31930 45859 48740 28017 45426 FALSE FALSE TRUE 29926.71399 32505.22575 36313.04235 25727.63708 42671.6852 33601.80543 36060.85002 36786.43858 33639.75491 34102.1342 0.877561322 0.953172771 1.064831958 0.754428944 1.251290754 0.98532852 1.057436752 1.078713677 0.986441339 1 15.05757441 -5.756340291 24.9999939 1.059955596 0.926285033 0.331959842 0.101667299 162.8179756 798264.7683 0.029212378 0.036554834 1.75E-06 5.756340291 -0.133670563 FSHEEIAMATVTALRR ddPTM_HeLa_A485_30min_R1 3 FSHEEIAMATVTALRR 16 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BU78;H3BR68 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;; ;; 157.68 1.61E-08 814622000 112717.4 162897 154962 124120 197844 176968 234610 305658 128920 169167 FALSE FALSE TRUE 137790.9968 181946.3871 212288.8923 130900.3613 178145.9567 186233.7708 184483.6569 230694.8962 154793.0615 126996.7802 1.084995986 1.43268504 1.671608461 1.030737639 1.402759632 1.466444823 1.452664049 1.816541301 1.218873906 1 16.95443239 -5.989181586 24.9901174 1.444554608 1.324867052 0.004023993 0.257562456 810.8189657 1872948.631 0.07839114 0.088804922 1.03E-06 5.989181586 -0.119687556 FSIPS(ph)PTFSK ddPTM_HeLa_A485_30min_R1 2 FSIPSPTFSK 10 0 Q8IZQ8-2;Q8IZQ8;Q8IZQ8-3 Q8IZQ8-2 MYOCD Myocardin 1 0 FSIPS(0.957)PT(0.041)FS(0.001)K;FSIPS(0.99)PT(0.01)FSK ; 118.31 0.00035074 197446000 614090 644850 490390 657650 832110 711940 896310 930660 530230 837460 TRUE FALSE FALSE 750692.2019 720259.5981 671805.6678 693575.7542 749262.2067 749216.0775 704806.0463 702414.1758 636642.2974 628696.6343 1.194045206 1.145639341 1.068568895 1.103196226 1.191770666 1.191697293 1.121059042 1.117254551 1.01263831 1 19.26200451 -7.725347266 2.615626071 0.99616585 1.143667564 0.666658385 0.038730876 0.181197167 2.309134455 0.039109993 0.011337283 1.88E-08 7.725347266 0.147501714 FSIPS(ph)PTFSK ddPTM_HeLa_A486_30min_R1 2 FSIPSPTFSK 10 0 Q8IZQ8-2;Q8IZQ8;Q8IZQ8-3 Q8IZQ8-2 MYOCD Myocardin 1 0 FSIPS(0.937)PT(0.033)FS(0.03)K;FS(0.004)IPS(0.944)PT(0.05)FS(0.002)K ; 84.289 0.0049197 165383000 571520 532100 395680 241190 623010 568180 617630 615480 488050 695150 TRUE FALSE FALSE 531459.3993 489934.4581 548897.8927 561502.5091 544866.2765 498083.7284 463092.4414 475348.6398 530354.567 521079.9153 1.019919179 0.94022902 1.053385242 1.077574653 1.045648202 0.955868215 0.888716736 0.912237501 1.017798904 1 18.99114512 -6.328761285 5.980720284 0.944505739 1.026652878 0.346055994 0.048846601 0.255689968 17.48719238 0.018399353 0.016241054 4.69E-07 6.328761285 0.082147139 FSLAHSMLAIS(ph)GHLDSDDDSGSGSLVGIDNK ddPTM_HeLa_A485_30min_R1 1 FSLAHSMLAISGHLDSDDDSGSGSLVGIDNK 31 0 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 FS(0.011)LAHS(0.011)MLAIS(0.483)GHLDS(0.483)DDDS(0.009)GS(0.002)GS(0.002)LVGIDNK 97.441 0.00014575 151910000 41861 63431 54328 33745 74374 51664 75801 80810 55262 64049 TRUE FALSE FALSE 51172.83503 70848.70367 74426.18798 35588.4039 66969.06342 54369.04715 59605.49711 60991.22079 66352.57651 48082.76303 1.064265691 1.473474052 1.547876688 0.740148894 1.392787336 1.130738829 1.239643759 1.268463311 1.379965965 1 15.55323218 -10.97344321 2.639927522 0.787142258 1.250153719 0.102832054 0.220243366 45995073.06 21514331.61 59786643.81 0.055697587 1.06E-11 10.97344321 0.463011461 FSLCS(ph)DNLEGISEGPSNR ddPTM_HeLa_A485_30min_R1 2 FSLCSDNLEGISEGPSNR 18 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;B4DGD8;A0A0A0MQV8 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 FSLCS(1)DNLEGISEGPSNR;FS(0.005)LCS(0.995)DNLEGISEGPSNR ; 235.45 3.58E-45 196320000 126820 154859 149989 134197 180922 133385 163220 179419 138095 185641 TRUE FALSE FALSE 155030.6715 172968.413 205476.1727 141527.8423 162908.7704 140368.8323 128346.7136 135416.2089 165809.3998 139364.1152 1.112414564 1.241125901 1.474383649 1.015525712 1.168943456 1.007209296 0.920945205 0.971672003 1.189756772 1 17.0884996 -5.296651937 24.9289536 1.037121935 1.272489888 0.477975516 0.113385696 493.9568616 349698.77 0.032842433 0.048715465 5.05E-06 5.296651937 0.235367953 FSLCS(ph)DNLEGISEGPSNR ddPTM_HeLa_A486_30min_R1 2 FSLCSDNLEGISEGPSNR 18 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;B4DGD8;A0A0A0MQV8 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 FSLCS(1)DNLEGISEGPSNR;FSLCS(1)DNLEGISEGPSNR ; 211.09 1.49E-26 59405000 120929 139378 99028 47840 139384 123991 138786 154365 122517 136448 TRUE FALSE FALSE 112452.5016 128333.1797 137374.2937 111373.9377 121901.159 108694.2511 104060.2749 119219.4593 133136.8722 102280.5327 1.099451661 1.254717553 1.34311281 1.088906508 1.191831484 1.062707127 1.017400596 1.165612421 1.301683407 1 16.64217205 -5.289859339 24.76130937 1.121749005 1.234656412 0.214268818 0.099966747 996.8337919 868503.8314 0.028813248 0.042745754 5.13E-06 5.289859339 0.112907407 FSLS(ph)PSLGPQASR ddPTM_HeLa_A485_30min_R1 3 FSLSPSLGPQASR 13 0 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 FS(0.005)LS(0.841)PS(0.153)LGPQASR;FSLS(0.5)PS(0.5)LGPQASR;FSLS(1)PSLGPQASR ;; 257.55 2.91E-41 890990000 481910 614826 561718 496362 649180 584170 664130 754220 518382 654960 TRUE FALSE FALSE 589109.2169 686724.5524 769520.8632 523476.9992 584545.3598 614756.2379 522233.2001 569246.3624 622416.5125 491690.5256 1.198130096 1.396660128 1.565051233 1.064647318 1.188848126 1.250290998 1.062117679 1.157733031 1.265870461 1 18.90739103 -5.275549212 24.95472088 1.151146359 1.387618462 0.491131317 0.114096239 642.1194736 1135654.303 0.031954345 0.047664937 5.30E-06 5.275549212 0.236472103 FSLS(ph)PSLGPQASR ddPTM_HeLa_A486_30min_R1 3 FSLSPSLGPQASR 13 0 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 FS(0.003)LS(0.498)PS(0.498)LGPQASR;FSLS(0.968)PS(0.032)LGPQASR;FSLS(1)PSLGPQASR ;; 302.41 5.71E-58 502740000 644980 653390 543660 225007 728080 555060 679890 647470 503935 682140 TRUE FALSE FALSE 599770.2327 601612.9968 754179.7117 523827.6672 636757.4173 486582.3406 509774.3309 500055.2152 547616.4915 511327.704 1.172966432 1.176570313 1.474943966 1.02444609 1.24530201 0.951605667 0.996962079 0.977954473 1.070969727 1 18.96388867 -6.021601379 1.569135365 0.997931478 1.243603051 0.465041861 0.112390938 0.334599311 1.674594812 0.043975261 0.048065304 9.51E-07 6.021601379 0.245671573 FSLS(ph)VPR ddPTM_HeLa_A486_30min_R1 1 FSLSVPR 7 0 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6R9X1 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 FS(0.318)LS(0.682)VPR 65.305 0.027263 20014000 42854 46612 38898 12697 52526 36114 43237 37864 34458 33183 TRUE FALSE FALSE 39850.1559 42918.29536 53960.34732 29559.25767 45937.69929 31658.62186 32418.64529 29243.19377 37444.84718 24873.76081 1.602096128 1.725444563 2.169368264 1.188371067 1.846833683 1.272771822 1.303327049 1.175664347 1.505395483 1 14.60233703 -6.150974519 0.918545665 1.223336256 1.776588786 0.417310199 0.26085771 0.564327923 1.030427277 0.146562897 0.151403419 7.06E-07 6.150974519 0.55325253 FSNNPKELTVETK ddPTM_HeLa_A486_30min_R1 1 FSNNPKELTVETK 13 1 X6R383;A0A087WYZ9;Q96T68-2;Q96T68-3;Q96T68 X6R383 SETDB2 Histone-lysine N-methyltransferase SETDB2 0 0 72.265 0.028944 1193500 5868 4426.1 3705.4 3762.8 5807 3817.9 4148.8 2669.5 1880.1 2579.3 FALSE FALSE TRUE 5456.683502 4075.359716 5140.230114 8759.988561 5078.631912 3346.886316 3110.726358 2061.713125 2043.068582 1933.426492 2.822286509 2.107843114 2.658611608 4.530810248 2.626752004 1.731064682 1.608918866 1.066351958 1.056708693 1 10.9169442 -6.403229272 2.225951085 1.183915419 2.989724195 0.668494489 0.597240521 0.214278679 2.089298768 0.270389975 0.22674828 3.95E-07 6.403229272 1.805808776 FSNS(ph)MESLSSR ddPTM_HeLa_A485_30min_R1 2 FSNSMESLSSR 11 0 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 FSNS(0.989)MES(0.011)LSSR;FS(0.005)NS(0.983)MES(0.012)LSSR ; 162.13 6.96E-08 545940000 431140 505390 460190 460150 653070 472750 639860 603680 421560 663150 TRUE FALSE FALSE 527045.6056 564490.9642 630433.4311 485286.8293 588048.0577 497502.459 503148.6838 455626.5335 506163.2252 497838.9094 1.058666962 1.133882775 1.266340214 0.974786864 1.181201482 0.999324178 1.010665648 0.915208765 1.016720902 1 18.92531947 -6.364073427 5.839413285 0.982431491 1.123023852 0.4422965 0.075553479 0.219774185 10.4339757 0.026471872 0.023257654 4.32E-07 6.364073427 0.140592361 FSNS(ph)MESLSSR ddPTM_HeLa_A486_30min_R1 2 FSNSMESLSSR 11 0 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 FSNS(1)MESLSSR;FS(0.002)NS(0.997)MES(0.001)LSSR ; 209.87 4.43E-15 522070000 245889 313217 253465 104099 342314 310539 327932 348960 238178 321120 TRUE FALSE FALSE 228653.4509 288396.5442 351613.436 242347.7329 299377.7862 272227.8555 245879.9451 269509.4257 258823.4608 240709.4619 0.949914678 1.198110544 1.460737909 1.00680601 1.243730861 1.130939571 1.021480183 1.119646165 1.075252542 1 17.87693333 -6.54405824 6.567508245 1.065096377 1.181005594 0.146090145 0.132461427 0.339619823 55.73035423 0.050670073 0.039892082 2.86E-07 6.54405824 0.115909217 FSPFPVQDRPESSLVFKDT(ph)LRTPPR ddPTM_HeLa_A486_30min_R1 1 FSPFPVQDRPESSLVFKDTLRTPPR 25 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 FSPFPVQDRPES(0.001)S(0.001)LVFKDT(0.499)LRT(0.499)PPR 87.25 0.0049485 92326000 144080 100690 92816 59759 154330 124740 148930 146540 85606 167750 TRUE FALSE FALSE 133980.736 92710.95769 128756.8409 139121.9721 134972.4923 109350.8471 111666.1388 113176.0409 93026.39701 125744.3081 1.065501397 0.73729745 1.023957607 1.106387829 1.073388484 0.869628603 0.888041299 0.900049017 0.739806027 1 16.94013357 -6.288937756 23.38604069 0.873791525 0.993735621 0.225765203 0.112093653 558.1373546 474666.0567 0.040982624 0.036155674 5.14E-07 6.288937756 0.119944095 FSPFPVQDRPESSLVFKDTLRT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 FSPFPVQDRPESSLVFKDTLRTPPR 25 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 FSPFPVQDRPES(0.008)S(0.008)LVFKDT(0.18)LRT(0.805)PPR 84.035 0.0061889 131870000 65330 114390 73059 55237 107080 113080 129890 172580 77844 69956 TRUE FALSE FALSE 79862.43311 127766.9154 100086.5643 58254.45744 96418.73922 119000.6939 102137.9404 130254.4844 93466.57677 52517.25664 1.520689355 2.432855857 1.905784322 1.109244107 1.835943943 2.265935076 1.944845312 2.480222554 1.779730754 1 15.68050394 -6.013649244 24.62243863 1.996619349 1.761846904 0 0.480040908 1907.308565 3440676.247 0.153636903 0.160171331 9.69E-07 6.013649244 -0.234772445 FSPFPVQDRPESSLVFKDTLRT(ph)PPR ddPTM_HeLa_A486_30min_R1 1 FSPFPVQDRPESSLVFKDTLRTPPR 25 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 FSPFPVQDRPESSLVFKDT(0.261)LRT(0.739)PPR 103.18 0.00029782 177840000 237400 218190 164350 107700 298760 200970 294180 295000 165100 297120 TRUE FALSE FALSE 220759.4859 200899.8298 227990.7214 250731.0429 261286.735 176176.3647 220573.0525 227834.9398 179411.0009 222719.2181 0.991200884 0.902031857 1.02366883 1.125771925 1.173166542 0.79102453 0.990363806 1.022969377 0.805547911 1 17.76486653 -6.260710127 24.99999176 0.927690634 1.038832924 0.269850437 0.099321851 110.034435 3772207.499 0.035728379 0.033733523 5.49E-07 6.260710127 0.11114229 FSPLTTNLINLLAENGR ddPTM_HeLa_A486_30min_R1 2 FSPLTTNLINLLAENGR 17 0 A0A494C0K9;H7C0C1;P48047 A0A494C0K9 ATP5O "ATP synthase subunit O, mitochondrial" 0 0 ; ; 160.78 3.79E-10 14286400 7207.9 10562.6 8765.1 3673.7 12442.8 10410.2 11833.5 9882.8 10499.4 13229.9 FALSE FALSE TRUE 6702.663432 9725.581108 12159.18146 8552.559259 10882.108 9125.895367 8872.633138 7632.70218 11409.49645 9917.046928 0.675872917 0.980693263 1.22608893 0.862409881 1.097313351 0.92022307 0.894685001 0.769654741 1.15049334 1 13.27569487 -4.261966295 9.031641122 0.9836815 0.674551182 0.338224309 0.131236563 0.093673318 160.2771413 0.032410986 0.181445991 5.47E-05 4.261966295 -0.309130319 FSPPS(ph)PLPQAVFSTSSR ddPTM_HeLa_A485_30min_R1 2 FSPPSPLPQAVFSTSSR 17 0 A0A1X7SBS4;Q99594 A0A1X7SBS4 TEAD3 Transcriptional enhancer factor TEF-5 1 0 FSPPS(1)PLPQAVFSTSSR;FSPPS(1)PLPQAVFSTSSR ; 212.78 8.84E-26 878750000 72871 101859 97756 73276 124732 101064 118185 135679 79670 107162 TRUE FALSE FALSE 89080.90255 113770.524 133920.0124 77278.88234 112313.2441 106355.5548 92933.80927 102403.5125 95659.03822 80448.48557 1.10730366 1.414203427 1.66466791 0.960600834 1.396088979 1.322033025 1.155196504 1.272907896 1.189071958 1 16.29577764 -8.553142246 0.328910214 0.948316895 1.347437977 0.202329118 0.179793178 5.085978787 1.09024541 0.61992807 0.199027393 2.80E-09 8.553142246 0.399121082 FSPPS(ph)PLPQAVFSTSSR ddPTM_HeLa_A486_30min_R1 1 FSPPSPLPQAVFSTSSR 17 0 A0A1X7SBS4;Q99594 A0A1X7SBS4 TEAD3 Transcriptional enhancer factor TEF-5 1 0 FSPPS(1)PLPQAVFSTSSR 169.49 1.48E-12 0 72455 74535 60883 23984 91588 64695 80912 78004 66032 72027 TRUE FALSE FALSE 67376.27866 68628.57515 84458.5281 55835.96408 80100.17902 56713.58867 60666.9618 60244.19202 71755.70693 53990.97038 1.247917535 1.271112089 1.564308393 1.034172264 1.483584726 1.050427289 1.123650147 1.115819767 1.329031622 1 15.72043053 -6.279477033 24.99615983 1.131016024 1.315159889 0.28671727 0.154600396 1152.957914 1597737.749 0.05209074 0.046033977 5.25E-07 6.279477033 0.184143865 FSPS(ph)PR ddPTM_HeLa_A485_30min_R1 3 FSPSPR 6 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 FS(0.003)PS(0.997)PR;FSPS(1)PR;FSPS(1)PR ;; 103.35 0.010891 1504680000 802910 1002730 943070 983590 1323770 1031630 1307540 1469610 991960 1393830 TRUE FALSE FALSE 981514.5595 1119990.551 1291950.837 1037321.031 1191970.811 1085644.552 1028173.397 1109185.843 1191037.273 1046373.833 0.9380152 1.070354128 1.234693374 0.991348406 1.139144323 1.037530295 0.982606183 1.06002827 1.138252158 1 19.99696694 FSPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 FSPSPR 6 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 FS(0.001)PS(0.999)PR 110.31 0.0089736 495800000 669330 726450 644690 256740 862960 693100 791370 842150 618320 726940 TRUE FALSE FALSE 622413.4234 668883.4563 894331.2334 597703.6949 754719.51 607592.3689 593360.8557 650410.829 671916.4754 544909.4924 1.142232668 1.227512946 1.6412473 1.096886186 1.385036452 1.115033556 1.08891635 1.193612587 1.233079043 1 19.0556571 -6.275389427 24.21595075 1.135903331 1.302466283 0.243694943 0.15133834 828.1771291 1437630.965 0.052891431 0.046900856 5.30E-07 6.275389427 0.166562952 FSRS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 FSRSPIR 7 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 1 0 FS(0.007)RS(0.993)PIR 53.751 0.011457 0 23227 36376 27541 27257 33915 32537 33782 39385 27034 34489 TRUE FALSE FALSE 28393.76602 40629.85677 37729.56198 28745.98089 30538.30352 34240.58701 26564.19973 29725.767 32459.47583 25891.52702 1.09664316 1.569233701 1.457216561 1.11024664 1.179470932 1.32246302 1.025980418 1.148088599 1.253671744 1 14.66019243 -5.263721469 24.99286314 1.158156956 1.393851402 0.33980766 0.143025075 212.5295286 2327577.429 0.0387854 0.060807439 5.45E-06 5.263721469 0.235694446 FSRS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 FSRSPIR 7 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 1 0 FS(0.023)RS(0.977)PIR 70.056 0.0055532 0 19666 17994 18325 6859.6 22396 14241 21207 23528 14784 21142 TRUE FALSE FALSE 18287.51496 16568.08991 25420.93076 15969.49546 19586.88485 12484.09021 15900.7843 18171.18801 16065.48902 15847.90559 1.153938913 1.045443501 1.604056171 1.007672299 1.23592892 0.787743853 1.003336637 1.146598704 1.013729476 1 13.95200457 -5.869654253 2.164423806 1.006155227 1.233220112 0.245122277 0.176658519 0.455138585 4.360937318 0.061042428 0.072909387 1.35E-06 5.869654253 0.227064886 FSS(ph)PIVK ddPTM_HeLa_A485_30min_R1 6 FSSPIVK 7 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 FS(0.011)S(0.989)PIVK;FS(0.005)S(0.995)PIVK;FS(0.119)S(0.881)PIVK;FS(0.013)S(0.987)PIVK;FS(0.003)S(0.997)PIVK;FS(0.009)S(0.991)PIVK ;;;;; 151.97 0.00080659 2344540000 4370980 3839380 3004430 5310150 5760480 4235160 6261180 6064270 3317260 6424990 TRUE FALSE FALSE 5343289.421 4288362.093 4115893.682 5600230.048 5186946.385 4456906.429 4923427.744 4576998.274 3983003.654 4823358.236 1.107794437 0.889082229 0.853325314 1.161064506 1.075380706 0.924025588 1.020746854 0.948923561 0.825773965 1 22.20160653 -9.54605936 4.82556432 0.999999968 0.979144127 0.003676007 0.105855304 138394749.4 698714821.2 7.439301735 0.027003849 2.84E-10 9.54605936 -0.020855842 FSS(ph)PIVK ddPTM_HeLa_A486_30min_R1 6 FSSPIVK 7 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 FS(0.012)S(0.988)PIVK;FS(0.052)S(0.948)PIVK;FS(0.025)S(0.975)PIVK;FS(0.014)S(0.986)PIVK;FSS(1)PIVK;FS(0.001)S(0.999)PIVK ;;;;; 162.59 0.00032557 2950030000 7344070 7193920 3796730 3080170 6979020 7540580 9361440 9114480 5369600 8823400 TRUE FALSE FALSE 6829288.618 6623847.579 5266925.536 7170791.423 6103646.235 6610299.907 7019108.697 7039311.872 5835041.251 6613963.209 1.032556185 1.00149447 0.796334266 1.084189796 0.922842484 0.999446126 1.061256084 1.064310709 0.882230679 1 22.65708359 -6.502780624 23.82820745 1.010600377 0.965827932 0.034380275 0.085060033 1367.545111 1621358.035 0.029903635 0.025989131 3.14E-07 6.502780624 -0.044772445 FSS(ph)PTEELDYR ddPTM_HeLa_A485_30min_R1 2 FSSPTEELDYR 11 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 FS(0.042)S(0.955)PT(0.003)EELDYR;FSS(0.99)PT(0.01)EELDYR ; 228.74 2.89E-18 333700000 330380 352960 376870 352930 500240 333240 412000 371060 336810 465760 TRUE FALSE FALSE 403871.8912 394235.6017 516289.8959 372209.6722 450434.3492 350687.9311 323972.8343 280056.9532 404404.6776 349654.6037 1.155059556 1.127500103 1.476571137 1.064506711 1.288226565 1.002955281 0.926551033 0.800953141 1.156583306 1 18.41557097 -6.363549012 4.83553627 0.956179355 1.222011464 0.460070411 0.132348591 0.198845123 7.415909746 0.046483853 0.040767679 4.33E-07 6.363549012 0.265832109 FSS(ph)PTEELDYR ddPTM_HeLa_A486_30min_R1 3 FSSPTEELDYR 11 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 FS(0.131)S(0.864)PT(0.006)EELDYR;FS(0.006)S(0.983)PT(0.011)EELDYR;FSS(0.998)PT(0.002)EELDYR ;; 244.71 5.41E-22 404480000 628650 703940 527950 259974 723190 649760 804600 760480 585690 747040 TRUE FALSE FALSE 584584.8814 648157.2307 732386.379 605232.6104 632480.7667 569599.2175 603280.5698 587335.3052 636458.0808 559976.3216 1.043945715 1.157472568 1.307888121 1.080818219 1.129477698 1.017184469 1.077332285 1.048857394 1.136580345 1 19.0950063 -5.704704056 2.343419289 1.064284269 1.167685378 0.258899414 0.073161676 0.397471473 4.466399403 0.024076386 0.03187365 1.97E-06 5.704704056 0.103401109 FSS(ph)VSSPQPR ddPTM_HeLa_A485_30min_R1 5 FSSVSSPQPR 10 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 FS(0.004)S(0.48)VS(0.134)S(0.381)PQPR;FS(0.002)S(0.474)VS(0.136)S(0.388)PQPR;FS(0.055)S(0.459)VS(0.322)S(0.164)PQPR;FS(0.001)S(0.761)VS(0.186)S(0.051)PQPR;FS(0.003)S(0.56)VS(0.168)S(0.269)PQPR ;;;; 128.81 9.07E-05 3208890000 4106390 5384500 4635190 4569750 5884610 5144860 6338080 6379640 4583810 7080190 TRUE FALSE FALSE 5019842.289 6014170.436 6349939.667 4819383.871 5298717.566 5414236.914 4983897.431 4815023.287 5503738.622 5315228.934 0.944426355 1.131497911 1.194669081 0.906712379 0.996893574 1.018627228 0.937663738 0.905891984 1.035465958 1 22.3417004 -5.272281438 24.97659569 0.969285047 1.0943278 0.364326564 0.071676059 711.3332203 1638679.983 0.02023232 0.030352991 5.34E-06 5.272281438 0.125042753 FSS(ph)VSSPQPR ddPTM_HeLa_A486_30min_R1 2 FSSVSSPQPR 10 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 FS(0.027)S(0.674)VS(0.165)S(0.133)PQPR;FS(0.007)S(0.502)VS(0.115)S(0.376)PQPR ; 138.22 2.80E-05 2026660000 3675600 3700700 2913900 1144460 4218700 3365700 3729700 3777800 3383200 3984000 TRUE FALSE FALSE 3417959.421 3407443.054 4042240.117 2664360.718 3689551.308 2950474.154 2796489.611 2917677.409 3676458.5 2986380.469 1.14451573 1.140994287 1.353558316 0.892170554 1.235459228 0.987976644 0.936414379 0.976994539 1.231075055 1 21.50996655 -5.261790905 24.99999955 1.038213169 1.205819921 0.308366797 0.120545451 40.4936119 2879926.744 0.032953672 0.052587095 5.47E-06 5.261790905 0.167606752 FSSSIENSDS(ph)PVR ddPTM_HeLa_A485_30min_R1 3 FSSSIENSDSPVR 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 FSSSIENSDS(1)PVR;FSSSIENSDS(1)PVR;FSSSIENSDS(1)PVR ;; 300.29 7.88E-58 741560000 628650 731650 734680 714180 986850 732730 976860 1068580 735530 945720 TRUE FALSE FALSE 768491.0237 817210.103 1006468.705 753193.845 888595.749 771094.6098 768145.8808 806509.0795 883144.1243 709969.4087 1.082428361 1.15104974 1.417622636 1.060882111 1.251597235 1.086095542 1.081942224 1.135977226 1.24391856 1 19.43739734 -6.273347697 24.61405783 1.116357507 1.195571932 0.126278076 0.108474153 1471.879619 3042314.571 0.03788377 0.033666761 5.33E-07 6.273347697 0.079214425 FSSSIENSDS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 FSSSIENSDSPVR 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 FSSSIENSDS(1)PVR;FSSSIENSDS(1)PVR;FSSSIENSDS(1)PVR ;; 327.31 9.10E-81 858060000 917410 946700 766260 292793 1020300 889990 931590 982570 782250 916720 TRUE FALSE FALSE 853104.2965 871680.0442 1062976.393 681636.9009 892324.4601 780192.0826 698496.3286 758860.2604 850056.0598 687167.3452 1.241479681 1.26851203 1.546895964 0.991951823 1.298554808 1.135374211 1.016486499 1.104331086 1.237043736 1 19.39030195 -5.273409119 24.99143047 1.121082216 1.343917519 0.453722889 0.120450852 691.5007471 1443772.25 0.033636963 0.050333871 5.33E-06 5.273409119 0.222835302 FSSSSTSSS(ph)PSSLPR ddPTM_HeLa_A486_30min_R1 1 FSSSSTSSSPSSLPR 15 0 Q9NX09 Q9NX09 DDIT4 DNA damage-inducible transcript 4 protein 1 0 FSSS(0.001)S(0.004)T(0.005)S(0.022)S(0.013)S(0.45)PS(0.45)S(0.056)LPR 107.74 0.00012993 0 202000 180610 179300 78356 225530 166900 214590 233960 173850 227600 TRUE FALSE FALSE 187840.8431 166297.8058 248729.7618 182416.7279 197241.9244 146309.5749 160897.3123 180692.4153 188919.458 170607.4786 1.101011777 0.974739251 1.457906558 1.069218826 1.156115348 0.857580079 0.943084756 1.059111927 1.107333978 1 17.38032136 -6.21639021 23.50827975 0.993970549 1.154380137 0.266128164 0.131463124 322.8733952 168486.4768 0.044389037 0.044388716 6.08E-07 6.21639021 0.160409588 FSSSSTSSSPSS(ph)LPR ddPTM_HeLa_A486_30min_R1 1 FSSSSTSSSPSSLPR 15 0 Q9NX09 Q9NX09 DDIT4 DNA damage-inducible transcript 4 protein 1 0 FSSSS(0.001)T(0.006)S(0.002)S(0.008)S(0.053)PS(0.008)S(0.922)LPR 111.07 6.35E-05 0 239160 243470 167470 65015 254140 232100 277010 255590 217530 301960 TRUE FALSE FALSE 222396.119 224176.5505 232318.869 151358.2057 222263.3914 203465.8618 207699.1681 197397.7365 236385.6755 226347.2506 0.982543938 0.990409868 1.026382553 0.668699113 0.981957549 0.898910242 0.917612949 0.872101322 1.044349666 1 17.78817826 -9.454324763 10.322045 1.000011705 0.926616918 0.037080398 0.102184351 0 0 0.097737076 0.023704723 3.51E-10 9.454324763 -0.073394788 FSSVSS(ph)PQPR ddPTM_HeLa_A485_30min_R1 2 FSSVSSPQPR 10 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 FS(0.011)S(0.041)VS(0.042)S(0.907)PQPR;FS(0.001)S(0.014)VS(0.021)S(0.965)PQPR ; 108.98 0.00079781 1704320000 2024830 2670630 2371140 2200470 2769940 2581670 3055820 3160240 2156200 3414470 TRUE FALSE FALSE 2475246.448 2982936.947 3248323.357 2320676.104 2494155.048 2716842.249 2402919.093 2385186.185 2588929.562 2563305.468 0.965646303 1.163707168 1.267240053 0.905345123 0.97302295 1.059897965 0.937429863 0.930511878 1.009996504 1 21.28957398 -5.276016587 24.96421775 0.972894812 1.135348785 0.450401756 0.080184965 681.7283289 1167493.506 0.022896535 0.034126042 5.30E-06 5.276016587 0.162453973 FSSVSS(ph)PQPR ddPTM_HeLa_A486_30min_R1 2 FSSVSSPQPR 10 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 FS(0.001)S(0.017)VS(0.061)S(0.922)PQPR;FSS(0.014)VS(0.037)S(0.948)PQPR ; 147.83 4.55E-06 2926700000 2885590 2924380 2374090 940610 3390400 2731720 2984060 3074630 2602480 3251300 TRUE FALSE FALSE 2683325.042 2692641.478 3293401.228 2189787.616 2965144.418 2394708.16 2237416.626 2374603.868 2828065.062 2437153.318 1.101007894 1.104830566 1.351331164 0.898502199 1.216642546 0.982584125 0.918045086 0.974335037 1.160396862 1 21.21676558 -5.782843113 1.254582727 1.008561785 1.157514681 0.175145467 0.123592926 0.757665231 2.510895155 0.049733959 0.070029275 1.65E-06 5.782843113 0.148952896 FSTYSQS(ph)PPDTPSLR ddPTM_HeLa_A485_30min_R1 6 FSTYSQSPPDTPSLR 15 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 FSTYS(0.359)QS(0.641)PPDTPSLR;FSTYS(0.002)QS(0.998)PPDTPSLR;FSTYS(0.052)QS(0.948)PPDTPSLR;FSTYS(0.001)QS(0.999)PPDTPSLR;FSTYS(0.017)QS(0.982)PPDT(0.002)PSLR;FSTYS(0.365)QS(0.635)PPDTPSLR ;;;;; 287.78 3.85E-59 3867665000 2810477 3625130 3347576 2826605 4139120 3025671 4067190 4135790 2814998 3815032 TRUE FALSE FALSE 3435657.913 4049057.419 4585983.667 2981015.274 3727014.679 3184090.455 3198201.631 3121481.018 3379942.278 2864014.733 1.199595056 1.413769759 1.601243043 1.040851934 1.301325247 1.111757708 1.116684769 1.089896983 1.180141373 1 21.44960748 -5.275485569 24.99904812 1.13090161 1.405759345 0.548085557 0.118213678 583.9954287 1039378.655 0.033013321 0.049237798 5.30E-06 5.275485569 0.274857735 FSTYSQS(ph)PPDTPSLR ddPTM_HeLa_A486_30min_R1 4 FSTYSQSPPDTPSLR 15 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 FSTYS(0.003)QS(0.997)PPDTPSLR;FSTYS(0.005)QS(0.995)PPDTPSLR;FSTYS(0.035)QS(0.964)PPDT(0.001)PSLR;FST(0.001)YS(0.246)QS(0.753)PPDTPSLR ;;; 304.03 9.88E-68 2216290000 2537380 2527170 2033900 815380 2889630 2277650 2465650 2609660 2275620 2489320 TRUE FALSE FALSE 2359522.765 2326907.845 2821480.55 1898245.847 2527185.661 1996656.7 1848718.291 2015497.386 2472872.574 1865978.069 1.264496515 1.247017789 1.512065225 1.017292689 1.354349069 1.070032244 0.990750278 1.080129193 1.325242035 1 20.8315006 -5.274133206 24.9968217 1.125360307 1.33177565 0.35388909 0.136829832 882.3983006 1737626.202 0.038535475 0.057593621 5.32E-06 5.274133206 0.206415343 FSVCVLGDQQHCDEAK ddPTM_HeLa_A485_30min_R1 2 FSVCVLGDQQHCDEAK 16 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 ; ; 230.93 9.71E-33 183930000 252550 216180 186006 363290 366930 232570 358280 344440 250120 549350 FALSE FALSE TRUE 308728.8762 241460.3705 254817.3598 383135.6128 330397.1608 244747.0056 281730.5511 259965.5499 300316.7898 412407.155 0.748602134 0.585490255 0.617878125 0.92902271 0.801143134 0.593459649 0.683136914 0.630361396 0.728204606 1 18.65370984 -8.04409211 21.63929289 1.000000002 0.697999363 0.443348548 0.100684217 1719.813201 844040.9939 0.103797262 0.026800338 9.03E-09 8.04409211 -0.302000639 FSVLLLHGIR ddPTM_HeLa_A485_30min_R1 2 FSVLLLHGIR 10 0 B4DQI4;F8W9U3;Q96IU4 B4DQI4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B 0 0 ; ; 142.36 0.00032882 79428000 82791 74717 93480 96074 119079 128816 193133 215100 59105 141131 FALSE FALSE TRUE 101207.5723 83454.5032 128062.142 101322.2793 107223.0766 135560.6066 151868.5568 162346.3877 70966.83136 105949.639 0.955242257 0.787680864 1.208707677 0.956324913 1.012019273 1.279481533 1.433403249 1.532297696 0.669816641 1 16.69301915 -6.202852843 5.79357549 1.231735907 0.981940559 0.128377161 0.243685053 0.376718338 27.05036714 0.080986163 0.080451735 6.27E-07 6.202852843 -0.249795348 FSVLLLHGIR ddPTM_HeLa_A486_30min_R1 2 FSVLLLHGIR 10 0 B4DQI4;F8W9U3;Q96IU4 B4DQI4 ABHD14B Alpha/beta hydrolase domain-containing protein 14B 0 0 ; ; 140.16 0.00037969 81771000 42083 96614 108135 35793 135256 120834 150375 133034 133264 140110 FALSE FALSE TRUE 39133.19902 88957.95478 150007.768 83327.91288 118290.9313 105926.7296 112749.5845 102745.0623 144815.4308 105025.544 0.372606487 0.847012559 1.428297938 0.793406153 1.126306294 1.008580632 1.073544398 0.978286409 1.378859135 1 16.68038073 -4.371468647 3.511401209 1.086163076 0.356650777 0.599202703 0.180021807 0.159846284 3.18422403 0.042915791 0.250096599 4.25E-05 4.371468647 -0.729512299 FSVPSGSS(ph)PGSQSDAEPR ddPTM_HeLa_A485_30min_R1 2 FSVPSGSSPGSQSDAEPR 18 0 Q8TEP8;K7ELX0 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 0 FSVPS(0.112)GS(0.423)S(0.447)PGS(0.013)QS(0.004)DAEPR;FSVPS(0.008)GS(0.413)S(0.578)PGSQSDAEPR ; 143.86 5.42E-08 275060000 132812 181835 183860 118278 202189 149219 176945 205840 173050 170059 TRUE FALSE FALSE 162355.5712 203099.0215 251877.4651 124739.2276 182058.3532 157031.8761 139139.2552 155357.4173 207779.5477 127666.421 1.271717104 1.590857015 1.972934332 0.977071548 1.426047286 1.230017062 1.089865715 1.216901171 1.627519171 1 16.96201959 -5.271397212 24.98901315 1.236045723 1.609738252 0.351760386 0.240922197 764.29806 1917992.351 0.067133458 0.10093958 5.35E-06 5.271397212 0.373692529 FT(ph)DTRK ddPTM_HeLa_A485_30min_R1 2 FTDTRK 6 1 P13639 P13639 EEF2 Elongation factor 2 1 0 FT(0.999)DT(0.001)RK;FT(1)DTRK ; 72.547 0.023181 468028000 525777 231727 118540 744740 113432 192366 271097 221297 169682 399388 TRUE FALSE FALSE 642734.2797 258825.4569 162392.8789 785423.2604 102138.3118 202437.9863 213174.9113 167023.5638 203735.621 299827.9218 2.1436772 0.863246676 0.541620266 2.61958011 0.340656438 0.675180567 0.710990858 0.557064742 0.679508499 1 18.19377522 FT(ph)DTRKDEQER ddPTM_HeLa_A485_30min_R1 4 FTDTRKDEQER 11 2 P13639 P13639 EEF2 Elongation factor 2 1 0 FT(0.556)DT(0.444)RKDEQER;FT(1)DTRKDEQER;FT(0.932)DT(0.068)RKDEQER;FT(0.595)DT(0.405)RKDEQER ;;; 123.1 7.00E-05 1938850000 3724110 2165920 2528090 6208820 5094370 1754590 7340040 4285220 2463860 5021730 TRUE FALSE FALSE 4552525.421 2419205.503 3463335.694 6547992.115 4587156.635 1846457.619 5771780.491 3234263.076 2958334.102 3769905.129 1.207596814 0.641715221 0.918679801 1.736911644 1.216783043 0.489788882 1.531014785 0.857916304 0.784723753 1 21.84609679 FT(ph)DTRKDEQER ddPTM_HeLa_A486_30min_R1 2 FTDTRKDEQER 11 2 P13639 P13639 EEF2 Elongation factor 2 1 0 FT(0.883)DT(0.117)RKDEQER;FT(0.6)DT(0.4)RKDEQER ; 126.56 0.00027975 4905400000 3012800 2439000 1410950 2141370 3019400 3809900 5798700 5875100 1878650 3115200 TRUE FALSE FALSE 2801618.278 2245724.757 1957307.627 4985217.579 2640678.697 3339873.274 4347803.928 4537467.983 2041492.895 2335133.643 1.199767853 0.961711448 0.838199403 2.134874632 1.130846924 1.430270719 1.861907964 1.943129891 0.874250988 1 21.15507369 -5.215061288 24.99979454 1.520500739 0.996074593 0.231334298 0.398592265 568.2214286 306295.0148 0.104925654 0.181735931 6.09E-06 5.215061288 -0.524426146 FT(ph)GSFDDDPDPHRDPYGEEVDR ddPTM_HeLa_A485_30min_R1 1 FTGSFDDDPDPHRDPYGEEVDR 22 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.535)GS(0.465)FDDDPDPHRDPYGEEVDR 76.899 0.0054786 116940000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 FT(ph)GSFDDDPDPHRDPYGEEVDRR ddPTM_HeLa_A485_30min_R1 1 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.5)GS(0.5)FDDDPDPHRDPYGEEVDRR 93.949 0.0079437 414360000 92660 103470 107510 89090 152250 102230 134030 175490 120170 155430 TRUE FALSE FALSE 113271.8973 115569.9164 147282.4229 93956.76111 137091.4554 107582.6047 105393.3956 132450.8023 144287.0167 116684.1615 0.970756407 0.99045076 1.262231489 0.805222919 1.174893436 0.921998353 0.903236517 1.135122374 1.236560429 1 16.83224922 -7.374912432 9.918776879 1.140480372 1.009324393 0.13752473 0.135177372 0.74702299 60.8563653 0.071108131 0.034076226 4.22E-08 7.374912432 -0.131155979 FT(ph)GSFDDDPDPHRDPYGEEVDRR ddPTM_HeLa_A486_30min_R1 1 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.575)GS(0.425)FDDDPDPHRDPYGEEVDRR 125.11 3.69E-06 309580000 41539 58585 46902 22102 62142 67458 77037 71346 42315 69154 TRUE FALSE FALSE 38627.33061 53942.51124 65063.71048 51454.57297 54347.57091 59135.71782 57761.52779 55102.07327 45982.89827 51837.38828 0.745163518 1.040610128 1.255150243 0.992615073 1.048424172 1.140792771 1.11428314 1.062979349 0.887060475 1 15.66170541 -4.271501811 5.026938987 1.071238023 0.73149416 0.507116475 0.092994139 0.122976625 9.768189396 0.023224315 0.143023273 5.35E-05 4.271501811 -0.339743863 FT(ph)PVAS(ph)KFSPGAPGGSGSQPNQK ddPTM_HeLa_A486_30min_R1 1 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 2 0 FT(1)PVAS(0.564)KFS(0.436)PGAPGGSGSQPNQK 107.45 0.00020795 254290000 552040 450480 197370 238730 415660 557700 702910 561260 375140 828680 TRUE FALSE FALSE 513344.8467 414782.3242 273796.9498 555775.5047 363524.0469 488896.6443 527034.4834 433473.3502 407657.4372 621173.1342 0.826411862 0.667740283 0.440773972 0.89471916 0.585221779 0.787053749 0.848450222 0.697830164 0.656270233 1 19.24463591 -6.311829944 24.33665937 0.782193425 0.680435187 0.13208216 0.144470817 654.5549889 316121.9482 0.050019041 0.044112718 4.88E-07 6.311829944 -0.101758239 FT(ph)PVASKFS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_A486_30min_R1 1 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 2 0 FT(1)PVAS(0.018)KFS(0.788)PGAPGGS(0.097)GS(0.097)QPNQK 115.77 9.81E-05 234650000 553750 463310 189720 230390 378850 558840 655670 543360 385200 804510 TRUE FALSE FALSE 514934.9846 426595.6283 263184.6649 536359.5633 331331.1004 489896.0027 491614.431 419648.7895 418589.4461 603055.4595 0.853876665 0.707390376 0.436418675 0.889403379 0.549420613 0.812356467 0.815206003 0.695870973 0.694114346 1 19.20193116 FT(ph)SSQTQSPTPPKPPSPSFELGLSS(ph)FPPLPGAAGNLK ddPTM_HeLa_A486_30min_R1 1 FTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLK 37 1 Q92615;H0Y4V9 Q92615 LARP4B La-related protein 4B 2 0 FT(0.193)S(0.193)S(0.194)QT(0.164)QS(0.138)PT(0.137)PPKPPS(0.213)PS(0.213)FELGLS(0.253)S(0.301)FPPLPGAAGNLK 68.708 0.028268 95964000 29556 25779 9486.7 22235 23372 33634 46577 42085 22256 50736 TRUE FALSE FALSE 27484.27703 23736.17815 13160.2043 51764.20369 20440.46582 29484.57905 34922.94196 32503.16421 24185.168 38031.37536 0.72267376 0.624120951 0.346035456 1.361092077 0.537463229 0.77526986 0.918266606 0.854640777 0.635926725 1 15.21490249 -1.929473546 0.143118752 0.969559623 4.48E-10 0.088946709 0.253652345 149.8599031 1.819121821 1.092916975 28.56680414 0.011763226 1.929473546 -0.969559623 FT(ph)T(ph)DLDSPR ddPTM_HeLa_A485_30min_R1 1 FTTDLDSPR 9 0 F5H7V9;E9PC84;J3QSU6;P24821-6;P24821-5;P24821-2;P24821-3;P24821-4;P24821;H0YGZ3 F5H7V9 TNC Tenascin 2 0 FT(1)T(1)DLDSPR 68.735 0.022874 2437300000 0 0 30281 26379 0 26202 42305 31126 0 32400 TRUE FALSE FALSE 0 0 41483.202 27820.01797 0 27573.8962 33266.19115 23492.2997 0 24323.27628 0 0 1.70549401 1.143761131 0 1.133642355 1.367669008 0.965836157 0 1 14.57004995 -4.713812816 24.1850406 0.912861203 5.42E-08 0.338581969 0.511293149 99.39147092 50469.4691 0.133163073 0.352313973 1.93E-05 4.713812816 -0.912861149 FTASAGIQVVGDDLTVTNPK ddPTM_HeLa_A485_30min_R1 1 FTASAGIQVVGDDLTVTNPK 20 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 296.44 7.21E-72 33196000 19614 18467 17072 29420 29012 25047 33801 28591 22451 43884 FALSE FALSE TRUE 23977.06663 20626.55501 23387.64323 31027.1401 26123.46341 26358.42219 26579.14022 21579.01242 26956.70977 32944.52643 0.727801223 0.626099606 0.709909832 0.941799548 0.792953071 0.800085023 0.806784711 0.655010551 0.818245478 1 15.00775117 -14 0.272521062 2.625314281 0.747746158 0.41254166 0.085230806 239.271308 2.320464597 219.3990548 0.112772444 1.00E-14 14 -1.877568123 FTASAGIQVVGDDLTVTNPKR ddPTM_HeLa_A485_30min_R1 2 FTASAGIQVVGDDLTVTNPKR 21 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 308.45 5.84E-92 304360000 192829 288480 207770 196326 331440 331210 449310 592420 221010 310660 FALSE FALSE TRUE 235723.1458 322215.2266 284632.769 207050.7923 298440.6698 348551.6435 353311.248 447128.0661 265364.6798 233218.1793 1.010740872 1.381604245 1.220457041 0.887798682 1.279662978 1.494530334 1.514938711 1.917209317 1.137838742 1 17.83132072 -6.086143368 4.350120822 1.474019186 1.143405891 0.191261502 0.261548482 0.318185846 10.74783956 0.085779796 0.087284727 8.20E-07 6.086143368 -0.330613295 FTASAGIQVVGDDLTVTNPKR ddPTM_HeLa_A486_30min_R1 2 FTASAGIQVVGDDLTVTNPKR 21 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 278.58 3.52E-64 133350000 163550 165324 126558 89394 223855 180936 219321 220758 143053 236290 FALSE FALSE TRUE 152085.9896 152223.1241 175564.6469 208113.7497 195777.0185 158613.9559 164444.5661 170496.2225 155452.9492 177121.446 0.858653726 0.859427966 0.991210556 1.174977703 1.105326447 0.895509604 0.928428317 0.962595024 0.877663054 1 17.43437938 -9.739527112 13.78125731 0.999963749 0.967025082 0.010400007 0.1004427 0 0 0.108410806 0.026293483 1.82E-10 9.739527112 -0.032938666 FTATMST(ph)PDKK ddPTM_HeLa_A486_30min_R1 1 FTATMSTPDKK 11 1 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2;B1B047 C9J5J4 LIN9 Protein lin-9 homolog 1 0 FT(0.266)AT(0.221)MS(0.184)T(0.329)PDKK 64.65 0.017929 659410000 681130 668880 868120 360860 923780 744780 948550 880710 631620 1216400 TRUE FALSE FALSE 633386.3044 615875.5128 1204279.313 840100.3169 807910.8985 652896.616 711212.7573 680191.5588 686369.3302 911805.5226 0.694650656 0.675446131 1.320763346 0.921359101 0.886056158 0.716048104 0.78000488 0.745983153 0.75275847 1 19.79836662 -6.098307777 5.676247136 0.782354879 0.915232737 0.067597278 0.180190648 0.581612727 27.29023139 0.062515206 0.062900012 7.97E-07 6.098307777 0.132877857 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALK ddPTM_HeLa_A486_30min_R1 2 FTDKDQQPSGSEGEDDDAEAALK 23 1 H3BNW0;Q9NXG2 H3BNW0 THUMPD1 THUMP domain-containing protein 1 2 0 FTDKDQQPS(1)GS(1)EGEDDDAEAALK;FT(0.002)DKDQQPS(0.999)GS(1)EGEDDDAEAALK ; 99.446 0.0010136 173816000 381070 366940 131675 216670 265030 493230 563340 520210 310260 675130 TRUE FALSE FALSE 354358.9608 337862.338 182663.0864 504418.7099 231787.4661 432380.2974 422386.3736 401769.5391 337153.5866 506073.0536 0.700213059 0.667615744 0.360942131 0.996731018 0.458011871 0.854383165 0.834635179 0.793896328 0.666215251 1 18.94898613 -14 0.07585622 2.018079722 0.376009218 0.24305657 0.172578856 380.5995419 2.05483234 65.52769025 6.87797768 1.00E-14 14 -1.642070504 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALKK ddPTM_HeLa_A485_30min_R1 6 FTDKDQQPSGSEGEDDDAEAALKK 24 2 H3BNW0;Q9NXG2 H3BNW0 THUMPD1 THUMP domain-containing protein 1 2 0 FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK ;;;;; 138.9 5.76E-07 5780910000 2523081 1226480 746331 4997130 2033729 1927362 4154108 2965821 1490842 6621880 TRUE FALSE FALSE 3084331.664 1369906.167 1022429.894 5270110.558 1831243.8 2028275.694 3266548.89 2238448.75 1790040.315 4971167.183 0.620444163 0.275570327 0.205672 1.06013545 0.368373006 0.408007943 0.657098981 0.450286355 0.360084513 1 22.24515319 -11.06632737 2.47019891 1.744677506 0.489475362 0.304067069 0.231685921 23039220.54 7905712.352 96682882.9 0.058010727 8.58E-12 11.06632737 -1.255202144 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALKK ddPTM_HeLa_A486_30min_R1 8 FTDKDQQPSGSEGEDDDAEAALKK 24 2 H3BNW0;Q9NXG2 H3BNW0 THUMPD1 THUMP domain-containing protein 1 2 0 FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FT(0.006)DKDQQPS(0.997)GS(0.997)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK;FTDKDQQPS(1)GS(1)EGEDDDAEAALKK ;;;;;;; 170.46 1.15E-13 7978390000 4632830 3713310 1041398 3210137 2759786 5816600 8147530 7040470 3003346 9399110 TRUE FALSE FALSE 4308092.541 3419053.792 1444655.195 7473361.167 2413627.906 5099007.031 6108931.818 5437508.673 3263678.449 7045511.678 0.611466241 0.485281119 0.205046171 1.060726532 0.342576667 0.723724161 0.867067162 0.771769166 0.463228024 1 22.74827305 -13.38361624 0.059285899 2.309122876 4.44E-11 0.212776071 0.237160828 559.3237158 2.700064358 114.0861381 22.89637107 4.13E-14 13.38361624 -2.309122876 FTDKDQQPSGS(ph)EGEDDDAEAALKK ddPTM_HeLa_A486_30min_R1 1 FTDKDQQPSGSEGEDDDAEAALKK 24 2 H3BNW0;Q9NXG2 H3BNW0 THUMPD1 THUMP domain-containing protein 1 1 0 FT(0.001)DKDQQPS(0.044)GS(0.955)EGEDDDAEAALKK 83.022 0.0020075 463830000 182220 163100 54494 110790 113220 223830 266800 247540 122520 403390 TRUE FALSE FALSE 169447.319 150175.362 75595.5362 257924.719 99018.89187 196216.1303 200043.8181 191180.5458 133140.1322 302378.5184 0.560381471 0.496646927 0.250002998 0.852986252 0.327466688 0.648908962 0.661567558 0.632255713 0.440309493 1 18.20599613 -14 0.224877029 3.359120429 0.489930545 0.404651707 0.166218363 154.1959842 1.544081245 165.3129582 0.292867223 1.00E-14 14 -2.869189884 FTDT(ph)RKDEQER ddPTM_HeLa_A485_30min_R1 1 FTDTRKDEQER 11 2 P13639 P13639 EEF2 Elongation factor 2 1 0 FT(0.214)DT(0.786)RKDEQER 105.58 0.0035797 2925200000 1968100 1183100 1408000 3362400 2774200 1000600 4078600 2269600 1165900 2804200 TRUE FALSE FALSE 2405897.055 1321453.253 1928877.792 3546079.398 2497990.907 1052989.869 3207173.791 1712977.041 1399885.436 2105164.547 1.142854632 0.627719698 0.916259869 1.684466614 1.186601261 0.500193617 1.52347891 0.813702208 0.664976729 1 21.00550157 -7.470009654 24.99986469 0.801434582 1.071326673 0.101426937 0.346967075 743.5235457 351585.9624 0.194080522 0.093232005 3.39E-08 7.470009654 0.26989209 FTDT(ph)RKDEQER ddPTM_HeLa_A486_30min_R1 1 FTDTRKDEQER 11 2 P13639 P13639 EEF2 Elongation factor 2 1 0 FT(0.43)DT(0.57)RKDEQER 129.29 0.0002294 2309100000 2300600 1862600 875960 2070200 2048300 3151200 4778400 5078100 1271000 2771700 TRUE FALSE FALSE 2139339.82 1715000.793 1215155.171 4819530.222 1791383.114 2762436.983 3582793.779 3921927.484 1381171.303 2077648.279 1.029692967 0.825452898 0.584870492 2.319704577 0.862216734 1.329597993 1.724446729 1.887676333 0.664776284 1 20.98652001 FTEHNS(ph)SPNVSGSLSSGLQK ddPTM_HeLa_A485_30min_R1 2 FTEHNSSPNVSGSLSSGLQK 20 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 FT(0.009)EHNS(0.939)S(0.052)PNVSGSLSSGLQK;FT(0.031)EHNS(0.931)S(0.039)PNVSGSLSSGLQK ; 176.9 1.91E-14 292160000 261590 253350 204355 215783 279270 236050 305940 287910 217620 359900 TRUE FALSE FALSE 319779.793 282977.0786 279954.4184 227570.6789 251464.8982 248409.213 240573.4197 217299.6211 261294.3379 270183.5535 1.183564984 1.047351236 1.036163804 0.84228176 0.930718747 0.919409082 0.890407342 0.804266649 0.967099346 1 18.04358033 -4.645193929 1.26791467 0.899796056 1.205612732 0.67752467 0.059687412 0.412099068 0.925814085 0.017853692 0.138902073 2.26E-05 4.645193929 0.305816676 FTEHNS(ph)SPNVSGSLSSGLQK ddPTM_HeLa_A486_30min_R1 2 FTEHNSSPNVSGSLSSGLQK 20 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 FT(0.36)EHNS(0.508)S(0.131)PNVSGSLSSGLQK;FT(0.023)EHNS(0.828)S(0.149)PNVSGSLSSGLQK ; 137.24 1.29E-07 87400000 129083 157294 104629 40455 159648 156864 172253 171594 127334 162586 TRUE FALSE FALSE 120034.9483 144829.4506 145144.1509 94181.28448 139623.4592 137511.7146 129153.4775 132525.7921 138371.4136 121873.4073 0.984915011 1.188359739 1.190941929 0.772779612 1.145643354 1.128315992 1.05973469 1.087405325 1.135370026 1 16.89502384 FTFPALEEDVIYDDVPCES(ph)PDAHQPGAER ddPTM_HeLa_A485_30min_R1 1 FTFPALEEDVIYDDVPCESPDAHQPGAER 29 0 Q9HCE6-5;Q9HCE6-3;Q9HCE6-2;Q9HCE6 Q9HCE6-5 ARHGEF10L Rho guanine nucleotide exchange factor 10-like protein 1 0 FTFPALEEDVIY(0.001)DDVPCES(0.999)PDAHQPGAER 67.571 0.0042552 40134000 6632.4 4525.3 3186 4042.2 7536.3 3749.3 5309.3 4273.1 3240.9 5485.9 TRUE FALSE FALSE 8107.754498 5054.49447 4364.633981 4263.015151 6785.95951 3945.60755 4174.924682 3225.115525 3891.318903 4118.366091 1.968682317 1.227305771 1.059797474 1.035122924 1.647731008 0.95805168 1.01373326 0.783105594 0.944869596 1 12.00785636 -1.840802337 1.078421549 1.046885103 199.9202761 0.619603128 0.21347258 251.5603006 1.810281876 0.070485921 121957.9332 0.014427719 1.840802337 198.873391 FTFPALEEDVIYDDVPCES(ph)PDAHQPGAER ddPTM_HeLa_A486_30min_R1 1 FTFPALEEDVIYDDVPCESPDAHQPGAER 29 0 Q9HCE6-5;Q9HCE6-3;Q9HCE6-2;Q9HCE6 Q9HCE6-5 ARHGEF10L Rho guanine nucleotide exchange factor 10-like protein 1 0 FTFPALEEDVIYDDVPCES(1)PDAHQPGAER 67.871 0.00421 26496000 3574.4 3821.4 2732 851.78 4731.1 3520.1 3715.7 4589.6 3296.7 3115 TRUE FALSE FALSE 3323.853018 3518.578347 3789.903565 1982.986887 4137.681322 3085.825852 2785.992559 3544.64827 3582.46061 2334.983725 1.423501579 1.506896305 1.623096352 0.849250839 1.772038614 1.321562039 1.193152881 1.518061232 1.534255067 1 11.18919678 -10.16646715 3.682094044 0.999667149 1.412044205 0.210708402 0.241304598 159643647.9 287757115.2 669553.1421 0.058064225 6.82E-11 10.16646715 0.412377056 FTFYDGPPFATGLPHYGHILAGTIK ddPTM_HeLa_A485_30min_R1 2 FTFYDGPPFATGLPHYGHILAGTIK 25 0 A0A0A0MSX9;P41252;Q5TCD1 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 306.49 1.23E-99 33153000 35071 39621 34983 38850 49556 40478 56090 56698 36055 60211 FALSE FALSE TRUE 42872.42296 44254.33129 47924.66746 40972.27713 44622.03064 42597.36549 44105.91329 42792.7266 43290.90778 45201.5058 0.948473335 0.97904551 1.060244932 0.906436111 0.98718018 0.942388196 0.975762035 0.9467102 0.95773154 1 15.46408321 -5.27585917 24.99488756 0.958361063 0.994233694 0.180060793 0.035548258 1311.799335 2273835.66 0.00966779 0.014416414 5.30E-06 5.27585917 0.035872631 FTGS(ph)FDDDPDPHRDPYGEEVDRR ddPTM_HeLa_A485_30min_R1 6 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.141)GS(0.859)FDDDPDPHRDPYGEEVDRR;FT(0.031)GS(0.969)FDDDPDPHRDPYGEEVDRR;FT(0.132)GS(0.868)FDDDPDPHRDPYGEEVDRR;FT(0.173)GS(0.827)FDDDPDPHRDPYGEEVDRR;FT(0.041)GS(0.959)FDDDPDPHRDPYGEEVDRR;FT(0.176)GS(0.824)FDDDPDPHRDPYGEEVDRR ;;;;; 247.5 1.80E-49 11281150000 1222535 1651260 1558363 1348983 2262160 1639674 2168390 2757330 2125360 2313480 TRUE FALSE FALSE 1494483.693 1844360.493 2134866.323 1422674.525 2036931.407 1725524.795 1705095.762 2081090.494 2551900.257 1736772.012 0.860495035 1.061947383 1.229215065 0.819148694 1.17282602 0.993524068 0.981761423 1.198251975 1.469335203 1 20.72797695 -7.384180155 4.847786569 1.2630865 1.024965265 0.257400729 0.158079672 0.276764672 9.679120019 0.08683569 0.039684055 4.13E-08 7.384180155 -0.238121234 FTGS(ph)FDDDPDPHRDPYGEEVDRR ddPTM_HeLa_A486_30min_R1 6 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.2)GS(0.8)FDDDPDPHRDPYGEEVDRR;FTGS(1)FDDDPDPHRDPYGEEVDRR;FT(0.142)GS(0.858)FDDDPDPHRDPYGEEVDRR;FT(0.24)GS(0.76)FDDDPDPHRDPYGEEVDRR;FT(0.009)GS(0.991)FDDDPDPHRDPYGEEVDRR;FT(0.054)GS(0.946)FDDDPDPHRDPYGEEVDRR ;;;;; 241.84 3.87E-49 9674290000 1768852 1923661 1402913 688603 2224260 1899131 2458420 2496990 1579196 1893646 TRUE FALSE FALSE 1644864.609 1771223.097 1946158.485 1603102.584 1945272.57 1664835.526 1843297.313 1928479.886 1716081.981 1419464.716 1.158792177 1.247810584 1.371050976 1.12937121 1.370426858 1.172861507 1.298586215 1.358596564 1.208964169 1 20.43691556 -8.024664841 23.17317986 0.999999996 1.265004894 0.46814474 0.084089448 730.3183378 686151.1038 0.076641842 0.019788839 9.45E-09 8.024664841 0.265004898 FTLWWSPTINR ddPTM_HeLa_A485_30min_R1 2 FTLWWSPTINR 11 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ; ; 176.38 1.22E-08 54028000 23213.2 27223.9 32293.3 30093.8 41417.9 22397.5 31660.2 28054.8 28863.9 41767.6 FALSE FALSE TRUE 28376.89626 30407.49829 44239.93551 31737.74809 37294.18845 23570.19847 24895.73963 21174.31631 34656.61997 31355.706 0.904999436 0.969759644 1.410905419 1.012184133 1.189390807 0.751703644 0.793977965 0.675293878 1.105273151 1 14.93644038 -6.261116688 24.9996868 0.840501107 1.103031531 0.304610261 0.17330972 34.08534429 2640741.596 0.059018911 0.055604917 5.48E-07 6.261116688 0.262530424 FTLWWSPTINR ddPTM_HeLa_A486_30min_R1 2 FTLWWSPTINR 11 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ; ; 150.35 0.00044444 45215000 38699 36306 31894 11155.7 46176 33902 41102 38600 32058 35129 FALSE FALSE TRUE 35986.39994 33428.98034 44244.21095 25971.03338 40384.17551 29719.51593 30817.84487 29811.62263 34836.81325 26332.46975 1.366616967 1.269496582 1.680215011 0.986274118 1.533626579 1.128626225 1.170336287 1.132124063 1.322960345 1 14.68455522 -6.531331782 0.123314688 0.828402183 1.677920383 0.244908945 0.184547257 17.1981947 1.127240609 2.735125707 4.428229809 2.94E-07 6.531331782 0.849518201 FTMDVIGGKY(ph)NSAK ddPTM_HeLa_A485_30min_R1 2 FTMDVIGGKYNSAK 14 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 FT(0.149)MDVIGGKY(0.85)NS(0.001)AK;FT(0.019)MDVIGGKY(0.98)NS(0.001)AK ; 72.496 0.0050269 44552000 133601 157674 127730 40782 188153 139134 118597 160142 130093 57543 TRUE FALSE FALSE 163320.0815 176112.6027 174982.6423 43009.81739 169419.8267 146418.8411 93257.7821 120866.9234 156201.4718 43198.5891 3.780680919 4.076813766 4.05065642 0.995630142 3.921883335 3.389435723 2.158815462 2.797936829 3.615892905 1 15.39869657 -9.131725489 0.15378873 1.15E-25 4.237071272 0.338668384 0.927756516 21.57464436 1.067336615 21.30939954 7.105268512 7.38E-10 9.131725489 4.237071272 FTMDVIGGKY(ph)NSAK ddPTM_HeLa_A486_30min_R1 2 FTMDVIGGKYNSAK 14 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 FT(0.186)MDVIGGKY(0.807)NS(0.007)AK;FT(0.421)MDVIGGKY(0.574)NS(0.005)AK ; 46.481 0.035284 52403000 105558 139846 130529 5800.2 173160 117865 85882 102070 96055 33104 TRUE FALSE FALSE 98158.9293 128764.0936 181073.3245 13503.15873 151440.6581 103324.0147 64393.41523 78830.88917 104381.1247 24814.54293 3.955701686 5.189057643 7.297064669 0.544163105 6.102899359 4.163849198 2.594986957 3.176801983 4.206449623 1 14.59889826 -8.450515455 0.204832492 7.94E-11 5.542093142 0.262912937 1.718356161 8.274089552 0.93362835 14.07951846 6.307092209 3.54E-09 8.450515455 5.542093142 FTNLLTSILDSAETKN ddPTM_HeLa_A486_30min_R1 1 FTNLLTSILDSAETKN 16 1 Q16719 Q16719 KYNU Kynureninase 0 0 54.7 0.030093 0 968.63 1233.7 542.95 821.71 1443.7 1366.2 1276.1 1389.1 1247.6 2222.2 FALSE FALSE TRUE 900.734039 1135.937119 753.1947807 1912.982407 1262.617684 1197.652135 956.8062828 1072.832254 1355.742973 1665.746656 0.540738915 0.681938706 0.452166467 1.148423381 0.757989025 0.718988167 0.574400843 0.644054875 0.813895059 1 10.70195328 -14 0.287432229 3.253092404 0.687845715 0.205455237 0.178882627 428.3439437 4.062712496 577.8915542 0.202779179 1.00E-14 14 -2.565246689 FTPGTFTNQIQAAFR ddPTM_HeLa_A485_30min_R1 2 FTPGTFTNQIQAAFR 15 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ; ; 263.44 8.70E-41 33506000 25543 27711 34155 29773 43688 25429 34181 27449 26978 41997 FALSE FALSE TRUE 31224.95223 30951.5604 46790.35581 31399.4236 39338.26932 26760.42312 26877.95012 20717.08971 32392.23714 31527.9208 0.990390468 0.981719048 1.484092659 0.995924336 1.247727992 0.848784901 0.852512612 0.657102948 1.027414315 1 14.94434241 -6.274359365 24.35330932 0.854191211 1.142294417 0.370887229 0.169814024 559.879532 1055332.296 0.058790893 0.05219412 5.32E-07 6.274359365 0.288103206 FTPGTFTNQIQAAFR ddPTM_HeLa_A486_30min_R1 2 FTPGTFTNQIQAAFR 15 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ; ; 161.25 1.79E-07 30751000 24412 37782 31752 14417.8 49110 39976 48353 47118 37802 35804 FALSE FALSE TRUE 22700.84486 34788.01672 44047.22475 33565.36704 42950.16587 35044.16757 36254.56797 36390.25998 41078.7078 26838.44536 0.845833079 1.296200889 1.641198816 1.250644983 1.600322422 1.305745065 1.350844563 1.355900444 1.530591927 1 14.71201348 -4.291869642 3.942892151 1.395533887 0.809869811 0.445171778 0.1764411 0.173619951 5.397106989 0.040634503 0.27462962 5.11E-05 4.291869642 -0.585664076 FTPPAES(ph)GSPSKETLPPPAAPPKPGK ddPTM_HeLa_A485_30min_R1 2 FTPPAESGSPSKETLPPPAAPPKPGK 26 2 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 FTPPAES(0.491)GS(0.491)PS(0.016)KET(0.002)LPPPAAPPKPGK;FT(0.013)PPAES(0.486)GS(0.486)PS(0.012)KET(0.002)LPPPAAPPKPGK ; 119.75 5.02E-05 1512620000 1539060 1077270 662480 2384620 1663260 1550520 2556580 2344340 1238740 3322800 TRUE FALSE FALSE 1881418.587 1203247.355 907558.9201 2514885.752 1497659.994 1631702.83 2010345.798 1769386.939 1487343.756 2494487.112 0.754230631 0.482362627 0.363825861 1.008177489 0.600387946 0.654123576 0.805915488 0.709318934 0.596252331 1 21.25031178 -14 0.151017635 2.170248278 0.563043623 0.263868273 0.16776211 187.893917 1.677793214 66.3407764 0.848405788 1.00E-14 14 -1.607204655 FTPPAES(ph)GSPSKETLPPPAAPPKPGK ddPTM_HeLa_A486_30min_R1 2 FTPPAESGSPSKETLPPPAAPPKPGK 26 2 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 FT(0.001)PPAES(0.544)GS(0.446)PS(0.007)KET(0.002)LPPPAAPPKPGK;FT(0.002)PPAES(0.522)GS(0.456)PS(0.016)KET(0.004)LPPPAAPPKPGK ; 130.21 2.92E-06 2846700000 1674730 1551000 531370 890160 1315100 1967850 2547250 2364350 1169450 2872900 TRUE FALSE FALSE 1557340.075 1428093.111 737130.6946 2072337.466 1150147.895 1725076.675 1909901.108 1826039.118 1270818.868 2153507.141 0.723164575 0.663147609 0.342293128 0.962308147 0.534081301 0.801054541 0.886879394 0.847937341 0.590115929 1 21.03825668 -6.097793142 1.105546054 0.82360969 0.622353358 0.18508573 0.176657864 0.878426685 2.262485429 0.086057776 0.090829443 7.98E-07 6.097793142 -0.201256332 FTPVASKFS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_A485_30min_R1 2 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 FTPVAS(0.001)KFS(0.999)PGAPGGSGSQPNQK;FT(0.211)PVAS(0.211)KFS(0.573)PGAPGGS(0.002)GS(0.002)QPNQK ; 295.75 2.02E-89 6224280000 1693170 1413380 983533 1764120 2196450 1648010 2715550 2975880 1369340 2455970 TRUE FALSE FALSE 2069809.825 1578662.496 1347382.785 1860489.409 1977763.726 1734297.255 2135350.558 2246040.764 1644153.978 1843741.878 1.122613664 0.856227499 0.730787103 1.009083447 1.072690136 0.940639943 1.158161337 1.218196967 0.891748459 1 20.81420526 -5.506296675 23.2765637 1.05650378 0.893748539 0.201414763 0.126825025 418.2700649 587132.793 0.036519366 0.052506103 3.12E-06 5.506296675 -0.162755241 FTPVASKFS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_A486_30min_R1 1 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 FTPVAS(0.027)KFS(0.973)PGAPGGSGSQPNQK 246.4 2.40E-49 5928600000 3220300 2729000 1631600 1530200 3054700 3091800 4613900 4424500 2297500 3654100 TRUE FALSE FALSE 2994573.6 2512744.101 2263399.216 3562382.932 2671551.042 2710365.151 3459453.419 3417137.936 2496649.15 2739089.576 1.093273337 0.917364705 0.826332675 1.300571899 0.975342707 0.989513149 1.262993898 1.247545157 0.911488683 1 21.38526502 -5.243123315 24.85328338 1.105740076 0.942827705 0.195734988 0.141094653 1221.959639 1658088.503 0.03842848 0.066404459 5.71E-06 5.243123315 -0.162912371 FTRT(ph)SGETTHTHR ddPTM_HeLa_A486_30min_R1 1 FTRTSGETTHTHR 13 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 FT(0.076)RT(0.462)S(0.462)GETTHTHR 106.36 0.00045381 25804000 35706 40210 43156 5446.1 50158 29685 32978 30174 33988 24163 TRUE FALSE FALSE 33203.19379 37023.61316 59867.15896 12678.79603 43866.71594 26022.76651 24726.55559 23304.03889 36934.10721 18112.42753 1.833171933 2.044100003 3.305308406 0.700005342 2.421912572 1.436735439 1.365170713 1.286632554 2.039158316 1 14.1446923 -5.267029203 24.99921754 1.510804038 2.359184095 0.347439227 0.581004239 540.7513021 2418388.474 0.157830394 0.241658797 5.41E-06 5.267029203 0.848380057 FTSGAFLS(ph)PSVSVQECR ddPTM_HeLa_A485_30min_R1 4 FTSGAFLSPSVSVQECR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 FTSGAFLS(0.989)PS(0.011)VSVQECR;FTSGAFLS(1)PSVSVQECR;FTSGAFLS(0.973)PS(0.027)VSVQECR;FTSGAFLS(0.996)PS(0.004)VSVQECR ;;; 310.9 4.99E-79 1086910000 659550 740260 793760 731010 1101770 658220 816490 869480 670360 906550 TRUE FALSE FALSE 806264.6221 826826.9676 1087404.855 770943.2253 992073.9103 692683.3814 642040.2414 656238.6667 804895.1031 680563.7688 1.184701066 1.21491476 1.597800096 1.132800864 1.457723663 1.017808195 0.943394684 0.964257424 1.182688735 1 19.37637082 -6.280351739 23.73490148 1.014506132 1.317185381 0.526642965 0.140211682 338.6437438 424994.1398 0.048336424 0.042714004 5.24E-07 6.280351739 0.302679249 FTSGAFLS(ph)PSVSVQECR ddPTM_HeLa_A486_30min_R1 4 FTSGAFLSPSVSVQECR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 FTSGAFLS(0.963)PS(0.037)VSVQECR;FTSGAFLS(0.999)PS(0.001)VSVQECR;FTSGAFLS(1)PSVSVQECR;FTSGAFLS(0.999)PS(0.001)VSVQECR ;;; 443.18 1.70E-193 839240000 766090 860360 714280 300197 975750 783610 899760 903440 710420 802820 TRUE FALSE FALSE 712391.0471 792181.9402 990868.3451 698873.7871 853362.3365 686936.1654 674630.5313 697746.434 771999.7776 601788.6465 1.183789444 1.316379006 1.646538782 1.161327637 1.418043264 1.141490737 1.121042305 1.1594543 1.282842044 1 19.19889736 -6.272442388 24.24941209 1.149686528 1.350137767 0.343871066 0.140728438 594.5691514 1310360.707 0.048975728 0.04361666 5.34E-07 6.272442388 0.20045124 FTSQQGPIKPVS(ph)PNSSPFGTDYR ddPTM_HeLa_A485_30min_R1 2 FTSQQGPIKPVSPNSSPFGTDYR 23 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 FTSQQGPIKPVS(0.694)PNS(0.153)S(0.153)PFGTDYR;FTSQQGPIKPVS(0.993)PNS(0.005)S(0.002)PFGTDYR ; 134.2 8.10E-07 1361460000 431960 459610 329680 509840 569340 417690 683060 715730 403890 675250 TRUE FALSE FALSE 528048.0118 513357.3914 451642.3511 537691.2682 512654.5105 439559.6025 537118.6509 540196.0953 484947.0183 506922.6021 1.041673837 1.01269383 0.890949327 1.06069697 1.011307266 0.867113837 1.059567375 1.065638212 0.956649035 1 18.95140596 FTSQQGPIKPVS(ph)PNSSPFGTDYR ddPTM_HeLa_A486_30min_R1 1 FTSQQGPIKPVSPNSSPFGTDYR 23 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 FTSQQGPIKPVS(0.986)PNS(0.006)S(0.007)PFGT(0.002)DYR 78.921 0.0024496 598360000 417550 395320 241070 182620 407210 409380 548010 539450 315800 508420 TRUE FALSE FALSE 388281.9012 363993.4035 334418.7601 425148.5891 356133.9247 358874.8579 410892.1017 416629.0111 343173.7983 381108.3227 1.018822938 0.95509172 0.877490047 1.115558396 0.93446903 0.941661036 1.078150429 1.093203654 0.900462619 1 18.53984159 -6.74678011 24.88789394 1.025721165 0.973267674 0.070908122 0.076147208 558.7047728 948545.8409 0.029015856 0.022379103 1.79E-07 6.74678011 -0.052453492 FTSSQTQS(ph)PTPPKPPS(ph)PSFELGLSSFPPLPGAAGNLK ddPTM_HeLa_A485_30min_R1 1 FTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLK 37 1 Q92615;H0Y4V9 Q92615 LARP4B La-related protein 4B 2 0 FT(0.07)S(0.076)S(0.084)QT(0.084)QS(0.345)PT(0.345)PPKPPS(0.846)PS(0.141)FELGLS(0.005)S(0.005)FPPLPGAAGNLK 110.16 0.00013318 70184000 32960 29070 17673 57508 35846 30958 64284 57473 25598 81632 TRUE FALSE FALSE 40291.83829 32469.48362 24210.97813 60649.51642 32277.04638 32578.91301 50549.19825 43377.65664 30735.2838 61282.64473 0.657475513 0.529831631 0.395070713 0.989668718 0.526691472 0.531617282 0.824853406 0.707829384 0.501533247 1 15.90319094 -14 0.269044137 3.475986855 0.606375536 0.29951033 0.167355265 270.3907674 2.633899921 372.2131586 0.20920828 1.00E-14 14 -2.869611319 FTSVRGDKVDILY(ph)NNIK ddPTM_HeLa_A485_30min_R1 1 FTSVRGDKVDILYNNIK 17 2 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 0 FTSVRGDKVDILY(1)NNIK 42.647 0.035221 195000000 83021 70774 49865 146510 107480 100590 160240 166350 75332 194560 TRUE FALSE FALSE 101488.735 79050.40365 68312.13856 154513.4703 96778.91381 105856.7369 126003.415 125552.4017 90450.44141 146059.7726 0.694843852 0.541219545 0.467699883 1.057878344 0.662598004 0.724749429 0.862683905 0.859596037 0.619270041 1 17.15619936 -3.133494135 0.096732511 1.115726289 6.09E-18 0.25708462 0.157447356 120.9958819 1.359784889 2.934984912 18.4109778 0.00073537 3.133494135 -1.115726289 FTVESPSTVTSGGGHHDPAGLGQPLHVPS(ph)SPEAAGQEEEGGGGEGQTPRPLEDTTR ddPTM_HeLa_A485_30min_R1 1 FTVESPSTVTSGGGHHDPAGLGQPLHVPSSPEAAGQEEEGGGGEGQTPRPLEDTTR 56 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 FTVESPSTVTSGGGHHDPAGLGQPLHVPS(0.54)S(0.46)PEAAGQEEEGGGGEGQTPRPLEDTTR 118.47 7.37E-11 351340000 26280 49549 55226 17034 64300 37585 44103 57805 44886 29677 TRUE FALSE FALSE 32125.89534 55343.32453 75656.39555 17964.52429 57898.06623 39552.89248 34680.03376 43628.23312 53894.20848 22279.07006 1.441976494 2.484094909 3.395850694 0.80634085 2.598764942 1.775338574 1.556619449 1.958260959 2.419051079 1 14.44340139 -5.259053307 24.99870701 1.801338002 2.444986022 0.180525116 0.681653213 397.7628768 4167307.564 0.183383538 0.299369608 5.51E-06 5.259053307 0.64364802 FTVESPSTVTSGGGHHDPAGLGQPLHVPS(ph)SPEAAGQEEEGGGGEGQTPRPLEDTTR ddPTM_HeLa_A486_30min_R1 1 FTVESPSTVTSGGGHHDPAGLGQPLHVPSSPEAAGQEEEGGGGEGQTPRPLEDTTR 56 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 FTVESPSTVTSGGGHHDPAGLGQPLHVPS(0.513)S(0.451)PEAAGQEEEGGGGEGQT(0.023)PRPLEDT(0.007)T(0.007)R 82.611 5.44E-06 181070000 22598 22969 25850 1987.5 34703 16134 17610 20857 21482 10752 TRUE FALSE FALSE 21013.9969 21148.85279 35859.81229 4627.000443 30350.22615 14143.55112 13203.79174 16108.31641 23344.07706 8059.629216 2.607315589 2.624047859 4.449312906 0.574095944 3.765709977 1.754863746 1.638262926 1.998642366 2.89642072 1 12.97649775 -5.794787498 0.861762495 1.927859162 2.99374427 0.136635915 1.051573709 1.36327945 2.201072835 0.537140824 0.851465124 1.60E-06 5.794787498 1.065885108 FTVETR ddPTM_HeLa_A485_30min_R1 2 FTVETR 6 0 Q60FE5;P21333-2;P21333;A0A087WWY3;Q14315-2;Q14315 Q60FE5;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C 0 0 ; ; 126.04 0.018105 55391000 100446 94723 124021 125371 146675 96872 121359 95248 127733 178440 FALSE FALSE TRUE 122789.8662 105800.0309 169901.5288 132219.7003 132071.522 101944.0681 95429.65824 71888.27866 153367.8415 133958.1919 0.916628273 0.789798887 1.268317573 0.987022132 0.985915979 0.761014065 0.712383893 0.536647126 1.144893338 1 17.03142328 -6.253084722 21.96743827 0.794615389 0.993788245 0.134145641 0.190356404 198.1445472 520992.5723 0.063057058 0.061840051 5.58E-07 6.253084722 0.199172856 FTVLLMPNGPMR ddPTM_HeLa_A485_30min_R1 2 FTVLLMPNGPMR 12 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ; ; 232.83 1.18E-28 95540000 45234 57923 58706 47992 74959 62072 72754 84517 49549 67526 FALSE FALSE TRUE 55296.14724 64696.59099 80423.79236 50613.68144 67495.81876 65321.99394 57209.51355 63789.07323 59493.02981 50693.01092 1.090804161 1.276242815 1.586486794 0.9984351 1.331462021 1.28857988 1.128548344 1.258340589 1.173594322 1 15.62949924 -8.896823541 0.411308584 0.963770858 1.272771312 0.197865141 0.149950554 6.281823077 1.527910721 0.540276434 0.101705093 1.27E-09 8.896823541 0.309000454 FTVLLMPNGPMR ddPTM_HeLa_A486_30min_R1 2 FTVLLMPNGPMR 12 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ; ; 174.02 7.95E-07 112137000 33362 34996 31630 15159.4 42512 36306 40381 40830 36495 43562 FALSE FALSE TRUE 31023.49608 32222.78951 43877.98308 35291.84931 37179.74855 31826.93485 30277.24669 31533.90031 39658.41598 32653.79166 0.950073315 0.986800854 1.343733173 1.080788708 1.138604329 0.974678077 0.927219938 0.965704095 1.214511821 1 14.9949629 -6.260866745 24.98874881 1.008704114 1.10618466 0.102374152 0.121994898 120.1956403 5245172.652 0.043276237 0.040751809 5.48E-07 6.260866745 0.097480546 FTYFSSLS(ph)PMAR ddPTM_HeLa_A485_30min_R1 2 FTYFSSLSPMAR 12 0 Q9H425 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 FTYFSSLS(1)PMAR;FTYFSSLS(1)PMAR ; 223.36 4.43E-23 1254380000 310370 377240 349190 408890 526010 347220 449620 477530 354870 582550 TRUE FALSE FALSE 379410.7357 421354.9364 478369.912 431226.6253 473638.5975 365399.9023 353555.0139 360415.0188 426089.1539 437331.006 0.867559653 0.963469159 1.093839461 0.986041738 1.083020849 0.835522516 0.808438023 0.824124093 0.974294409 1 18.73836611 -6.2740223 24.94862678 0.872481199 1.001396832 0.296004517 0.083203163 860.2978759 1705739.961 0.029593297 0.026259009 5.32E-07 6.2740223 0.128915633 FTYFSSLS(ph)PMAR ddPTM_HeLa_A486_30min_R1 2 FTYFSSLSPMAR 12 0 Q9H425 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 FTYFSSLS(1)PMAR;FTYFSSLS(1)PMAR ; 211.38 1.32E-17 1124960000 307900 312590 254940 110385 314720 246760 313330 302820 248800 269410 TRUE FALSE FALSE 286317.8 287819.23 353659.5955 256981.8585 275244.883 216317.2601 234931.5199 233874.4965 270366.1843 201947.9824 1.417779948 1.425214684 1.751241044 1.272515107 1.362949407 1.071153361 1.163326898 1.158092761 1.338791213 1 17.62362421 -5.744716231 1.861402662 1.163888638 1.512854955 0.568753631 0.134650758 0.24907543 1.780252849 0.045821524 0.061004113 1.80E-06 5.744716231 0.348966317 FVAFSGEGQS(ph)LR ddPTM_HeLa_A485_30min_R1 1 FVAFSGEGQSLR 12 0 Q92890;Q92890-1 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 FVAFSGEGQS(1)LR 83.53 0.0040748 41851000 40535 53391 45952 43401 63247 45532 61132 69392 43507 63949 TRUE FALSE FALSE 49551.87091 59634.61301 62951.55702 45771.88673 56949.90661 47915.98511 48070.6488 52373.5032 52238.45583 48007.69119 1.032165257 1.242188731 1.311280661 0.953428203 1.186266308 0.998089763 1.001311407 1.090939845 1.088126809 1 15.55097793 -5.264605172 24.9995289 1.051295599 1.199909266 0.366127596 0.090007252 294.4011736 2324824.212 0.024787618 0.038582588 5.44E-06 5.264605172 0.148613667 FVAFSGEGQS(ph)LR ddPTM_HeLa_A486_30min_R1 2 FVAFSGEGQSLR 12 0 Q92890;Q92890-1 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 FVAFSGEGQS(1)LR;FVAFS(0.001)GEGQS(0.999)LR ; 89.189 0.0022706 118027000 118615 143357 110153 62446 135164 146734 172409 189768 125756 166570 TRUE FALSE FALSE 110300.701 131996.8692 152807.1916 145377.4438 118210.4708 128631.451 129270.4446 146561.969 136656.6313 124859.7878 0.883396512 1.057160768 1.2238303 1.164325572 0.946745728 1.030207189 1.035324878 1.173812415 1.094480727 1 16.92994939 FVCKNNGVLFENQLLQIGVK ddPTM_HeLa_A485_30min_R1 2 FVCKNNGVLFENQLLQIGVK 20 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 0 0 ; ; 49.606 0.027547 127007000 136061 203574 178687 36880 436480 61005 324680 186299 122840 342760 FALSE FALSE TRUE 166327.3 227380.2084 244790.7571 38894.66101 393022.5186 64199.12747 255309.4656 140608.8781 147492.8612 257316.24 0.646392548 0.883660543 0.95132261 0.151155096 1.527391037 0.249495047 0.992201136 0.546443855 0.573196862 1 17.97318299 FVCKNNGVLFENQLLQIGVK ddPTM_HeLa_A486_30min_R1 2 FVCKNNGVLFENQLLQIGVK 20 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 0 0 ; ; 60.317 0.012003 152503000 386960 162697 151016 7340.4 232970 157426 248510 252240 238440 175780 FALSE FALSE TRUE 359836.1023 149804.2972 209493.4395 17088.82216 203748.7302 138004.3807 186330.1695 194810.4584 259108.1712 131763.5439 2.730923074 1.136917639 1.589919589 0.129693098 1.546320965 1.047363912 1.414125365 1.478485267 1.966463284 1 17.00759174 -4.258642818 24.7122068 1.254180467 2.730923699 0.474453338 0.465501017 197.9192975 1748829.794 0.114770092 0.77186704 5.51E-05 4.258642818 1.476743232 FVDKYSISLS(ph)PPEQQK ddPTM_HeLa_A486_30min_R1 1 FVDKYSISLSPPEQQK 16 1 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3K3 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 FVDKYS(0.003)IS(0.286)LS(0.711)PPEQQK 119.38 3.58E-05 226600000 241170 228500 123030 117590 234870 253290 313020 296960 202810 326150 TRUE FALSE FALSE 224265.2284 210392.8278 170670.5109 273755.4627 205410.4145 222041.6551 234699.0852 229348.6906 220389.7341 244479.9171 0.917315545 0.860573049 0.69809624 1.119746218 0.840193407 0.908220428 0.959993311 0.938108509 0.90146355 1 17.89935643 -1.000003604 0.076796025 1.077161272 0.491665084 0.110405642 0.097809761 468.8383323 2.641809958 3.184615898 29.27251112 0.09999917 1.000003604 -0.585496188 FVFDIFQFAK ddPTM_HeLa_A485_30min_R1 1 FVFDIFQFAK 10 0 Q16222-2;Q16222-3;Q16222 Q16222-2 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 0 128.38 0.003896 4259800 7151.1 7665 7679.5 7479 10900 7376.6 9586.1 8367.6 6847.8 12220 FALSE FALSE TRUE 8741.837524 8561.355073 10520.46662 7887.558832 9814.757728 7762.82737 7537.951424 6315.43298 8222.090648 9173.778892 0.952915655 0.933241925 1.146797491 0.859793867 1.069870753 0.846197348 0.821684446 0.688422193 0.896259954 1 13.16330042 -6.370355216 6.391237209 0.827119067 0.990071 0.310052264 0.103233593 0.261253289 13.31920938 0.035108728 0.03086091 4.26E-07 6.370355216 0.162951933 FVFDIFQFAK ddPTM_HeLa_A486_30min_R1 2 FVFDIFQFAK 10 0 Q16222-2;Q16222-3;Q16222 Q16222-2 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 0 ; ; 167.97 1.01E-05 6688400 14074.9 16344.7 12647.6 6838.4 18336.6 15719 18383.2 19440.2 13156.8 16717.1 FALSE FALSE TRUE 13088.32219 15049.48645 17545.08943 15920.14079 16036.65265 13779.7496 13783.52892 15014.09084 14297.24202 12531.02935 1.04447303 1.200977671 1.400131541 1.270457546 1.279755413 1.099650253 1.099951851 1.198153034 1.140947134 1 13.61321731 -6.264746232 24.77623315 1.119638227 1.247719577 0.318747441 0.094860797 350.2189638 2623964.995 0.034356085 0.031555809 5.44E-07 6.264746232 0.12808135 FVFSFK ddPTM_HeLa_A485_30min_R1 2 FVFSFK 6 0 M0QYI6;P61081 M0QYI6 UBE2M NEDD8-conjugating enzyme Ubc12 0 0 ; ; 121.68 0.019908 75479000 131924 150277 140184 134265 196779 180812 220980 239640 129705 195414 FALSE FALSE TRUE 161270.0387 167850.5879 192043.8951 141599.557 177186.9918 190279.0367 173765.8178 180867.9143 155735.6038 146700.8861 1.09931196 1.144168875 1.309084766 0.965226324 1.207811326 1.297054447 1.18449058 1.23290267 1.061585979 1 17.16251806 -7.933402305 4.838267774 1.001054365 1.1804876 0.297564346 0.093853441 0.223033285 9.414651117 0.090258922 0.023576251 1.17E-08 7.933402305 0.179433235 FVFSFK ddPTM_HeLa_A486_30min_R1 2 FVFSFK 6 0 M0QYI6;P61081 M0QYI6 UBE2M NEDD8-conjugating enzyme Ubc12 0 0 ; ; 118.03 0.022377 52846000 135406 144258 111965 47054 155071 145708 167598 157484 131871 166527 FALSE FALSE TRUE 125914.7386 132826.4707 155320.8465 109544.09 135620.5492 127732.0284 125663.2077 121628.3311 143301.6845 124827.5553 1.008709482 1.064079725 1.244283333 0.877563369 1.086463232 1.023267884 1.006694455 0.974370849 1.147997204 1 16.92957691 -5.262270157 24.99999904 1.018327814 1.101529724 0.182915652 0.086078908 133.1677081 4007365.251 0.023262552 0.036941937 5.47E-06 5.262270157 0.08320191 FVFSLVDAMNGK ddPTM_HeLa_A485_30min_R1 3 FVFSLVDAMNGK 12 0 P40926;P40926-2;G3XAL0 P40926 MDH2 "Malate dehydrogenase, mitochondrial;Malate dehydrogenase" 0 0 ;; ;; 323.62 3.00E-91 58766000 153818 170922 136473 156130 190530 198242 229058 250203 145699 246398 FALSE FALSE TRUE 188034.2834 190909.8411 186960.0418 164658.9866 171560.1642 208621.6446 180117.8871 188840.3219 174939.4529 184975.5132 1.016536082 1.032081694 1.010728602 0.890166399 0.927475 1.127833846 0.973739085 1.020893623 0.945743844 1 17.49697478 FVFSLVDAMNGK ddPTM_HeLa_A486_30min_R1 3 FVFSLVDAMNGK 12 0 P40926;P40926-2;G3XAL0 P40926 MDH2 "Malate dehydrogenase, mitochondrial;Malate dehydrogenase" 0 0 ;; ;; 323.62 3.00E-91 58380000 240556 257550 179713 89599 277461 243055 281998 266256 246478 286968 FALSE FALSE TRUE 223694.2666 237140.8 249302.6865 208591.0001 242659.2542 213069.3453 211439.1177 205635.3211 267842.9115 215109.345 1.039909571 1.102419795 1.158957955 0.969697528 1.128073977 0.990516453 0.982937853 0.955957172 1.245147725 1 17.71471068 -5.256860162 24.99180844 1.036436566 1.10062817 0.093915485 0.087338144 946.0232717 5163057.52 0.023426923 0.038847232 5.54E-06 5.256860162 0.064191604 FVFSVPQMAVPEGDLHAAVGAPVMS(ph)PLSPGER ddPTM_HeLa_A485_30min_R1 3 FVFSVPQMAVPEGDLHAAVGAPVMSPLSPGER 32 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FVFSVPQMAVPEGDLHAAVGAPVMS(0.56)PLS(0.44)PGER;FVFSVPQMAVPEGDLHAAVGAPVMS(0.999)PLS(0.001)PGER;FVFSVPQMAVPEGDLHAAVGAPVMS(0.945)PLS(0.055)PGER ;; 228.94 1.72E-39 264174000 125381 146496 131775 131528 154623 142359 170140 176187 110885 160463 TRUE FALSE FALSE 153271.5709 163627.4329 180524.0561 138713.0416 139228.1912 149812.6971 133788.1991 132976.862 133138.6024 120462.5272 1.272358919 1.358326416 1.498590975 1.151503665 1.155780096 1.243645643 1.110620889 1.103885707 1.105228368 1 16.87822491 -6.078262377 0.462620751 1.031851584 1.40301834 0.636413181 0.083525494 0.856510383 0.374752392 0.081580043 0.138302075 8.35E-07 6.078262377 0.371166756 FVFSVPQMAVPEGDLHAAVGAPVMS(ph)PLSPGER ddPTM_HeLa_A486_30min_R1 2 FVFSVPQMAVPEGDLHAAVGAPVMSPLSPGER 32 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FVFSVPQMAVPEGDLHAAVGAPVMS(1)PLSPGER;FVFSVPQMAVPEGDLHAAVGAPVMS(0.956)PLS(0.044)PGER ; 211.77 8.86E-30 177208000 117193 110420 112130 41870 136929 109478 120276 118366 113509 119548 TRUE FALSE FALSE 108978.3759 101669.9171 155549.7389 97475.47599 119754.088 95971.71745 90181.67265 91416.64571 123348.0515 89612.40267 1.21610818 1.134551848 1.735805919 1.087745369 1.336356179 1.070964672 1.00635258 1.020133854 1.376461827 1 16.4514108 -6.263364875 24.87996435 1.090514069 1.304989205 0.223404777 0.193160083 256.238271 3310920.612 0.06583508 0.061050132 5.45E-07 6.263364875 0.214475136 FVFSVPQMAVPEGDLHAAVGAPVMSPLS(ph)PGER ddPTM_HeLa_A485_30min_R1 1 FVFSVPQMAVPEGDLHAAVGAPVMSPLSPGER 32 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FVFSVPQMAVPEGDLHAAVGAPVMS(0.09)PLS(0.91)PGER 75.445 0.00062914 108250000 55693 41392 38843 67323 78039 50812 75042 75031 41200 93802 TRUE FALSE FALSE 68081.71571 46232.43434 53212.64209 71000.68502 70269.16315 53472.43775 59008.66366 56629.52961 49468.46209 70418.8877 0.966810439 0.656534573 0.755658657 1.00826195 0.997873801 0.759347946 0.837966426 0.804180973 0.702488547 1 16.10367482 -9.658445242 13.87747581 1 0.831976302 0.156956206 0.116719089 0 0 0.117670979 0.028539404 2.20E-10 9.658445242 -0.168023698 FVFSVPQMAVPEGDLHAAVGAPVMSPLS(ph)PGER ddPTM_HeLa_A486_30min_R1 1 FVFSVPQMAVPEGDLHAAVGAPVMSPLSPGER 32 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 FVFSVPQMAVPEGDLHAAVGAPVMS(0.12)PLS(0.88)PGER 73.574 0.00071384 125060000 25147 21715 18357 11735 27296 21943 31489 26979 25373 25705 TRUE FALSE FALSE 23384.32516 19994.22432 25465.32202 27319.67305 23872.28115 19235.89576 23610.11914 20836.47065 27572.35207 19268.30069 1.213616371 1.037674502 1.321617429 1.417855861 1.238940659 0.998318226 1.225334788 1.081386002 1.430969576 1 14.23394172 -6.03735713 24.63954776 1.152889185 1.249273907 0.101553477 0.146511531 1272.951625 839594.7483 0.04901001 0.049023984 9.18E-07 6.03735713 0.096384722 FVHFIDAPSLALIMPIVQR ddPTM_HeLa_A485_30min_R1 2 FVHFIDAPSLALIMPIVQR 19 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 118.47 3.96E-06 11182200 4343.44 6373.8 7299 5887.5 7661.5 6228.6 8544.1 7900.2 5118.6 7236 FALSE FALSE TRUE 5309.623243 7119.160465 9999.203837 6209.119217 6898.694159 6554.719865 6718.583236 5962.663563 6145.856069 5432.198369 0.977435447 1.310548692 1.840728773 1.143021443 1.269963593 1.206642214 1.236807418 1.097652029 1.131375486 1 12.40732045 -7.068656932 0.688146105 1.0258711 1.343011583 0.191170216 0.207519362 1.204811744 1.102497186 0.197622045 0.108172034 8.54E-08 7.068656932 0.317140483 FVHGPS(ph)PR ddPTM_HeLa_A485_30min_R1 5 FVHGPSPR 8 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR ;;;; 106.62 0.0010085 2514860000 1466840 2090750 2050720 1495550 2443540 1989950 2357460 2693160 1896850 2035650 TRUE FALSE FALSE 1793133.497 2335245.025 2809366.666 1577248.11 2200252.578 2094140.705 1853769.412 2032658.287 2277530.396 1528199.918 1.173363168 1.528101787 1.838350226 1.032095402 1.439767501 1.370331643 1.213041167 1.330099722 1.490335373 1 20.54340186 -12.71570544 0.223601316 1.38E-15 1.433766484 0.215214283 0.211793303 130.0470651 2.18497959 60.18849231 0.407848429 1.92E-13 12.71570544 1.433766484 FVHGPS(ph)PR ddPTM_HeLa_A486_30min_R1 5 FVHGPSPR 8 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR ;;;; 93.843 0.0024097 3213200000 2255260 2424750 1994730 671594 2585980 2036180 2245710 2340860 1981860 2299920 TRUE FALSE FALSE 2097177.92 2232603.979 2767142.877 1563504.772 2261622.275 1784976.814 1683809.605 1807897.279 2153649.221 1724005.062 1.216456939 1.295010107 1.605066561 0.906902658 1.311842015 1.035366342 0.976684838 1.048661236 1.249212817 1 20.71733258 -5.269686577 24.996868 1.081606844 1.364461097 0.459198471 0.147354397 555.6185637 1684053.345 0.040925278 0.061904111 5.37E-06 5.269686577 0.282854253 FVIATSTK ddPTM_HeLa_A485_30min_R1 2 FVIATSTK 8 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 150.84 0.00049967 99516000 169768 198528 158731 189605 241580 220140 268520 295950 181486 271600 FALSE FALSE TRUE 207532.3059 221744.1226 217452.2022 199962.641 217527.447 231666.19 211148.5084 223367.7985 217908.5755 203895.1184 1.017838522 1.087540125 1.066490478 0.980713234 1.066859514 1.136202729 1.035574123 1.095503415 1.068728752 1 17.63746771 -5.979108786 24.99963674 1.074564847 1.041209405 0.085260778 0.04282938 523.8322503 626844.7639 0.01302213 0.014764559 1.05E-06 5.979108786 -0.033355442 FVIATSTK ddPTM_HeLa_A486_30min_R1 2 FVIATSTK 8 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 172.15 4.77E-05 72756000 197509 191952 126926 61228 216239 193508 217450 219623 169241 237599 FALSE FALSE TRUE 183664.639 176741.0244 176075.1464 142541.8783 189116.2883 169634.9504 163041.71 169619.6372 183910.9461 178102.6639 1.03122904 0.99235475 0.988616018 0.800335465 1.061838628 0.952455998 0.915436673 0.952370018 1.03261199 1 17.44234957 -7.755948771 24.98006166 1.016306002 0.959831572 0.094030892 0.067410016 291.1737642 1324772.55 0.048361067 0.017089837 1.75E-08 7.755948771 -0.05647443 FVINYDYPNSSEDYIHR ddPTM_HeLa_A485_30min_R1 2 FVINYDYPNSSEDYIHR 17 0 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 124.43 5.95E-06 44329000 35258 41100 45813 38593 54112 40315 50797 46967 43790 48570 FALSE FALSE TRUE 43101.02046 45906.28748 62761.13514 40701.23787 48724.41928 42425.83106 39943.80598 35448.26961 52578.25133 36462.39286 1.182067798 1.259003699 1.721256621 1.116252519 1.336292422 1.16355038 1.095479557 0.972187145 1.441985761 1 15.15412162 -6.108719601 1.52652424 1.124795588 1.351764507 0.191535184 0.19190219 0.64608448 3.034636129 0.079940661 0.081667437 7.79E-07 6.108719601 0.226968919 FVKDFQDYMEPEEGCQGS(ph)PQR ddPTM_HeLa_A485_30min_R1 3 FVKDFQDYMEPEEGCQGSPQR 21 1 O43237;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 FVKDFQDYMEPEEGCQGS(1)PQR;FVKDFQDYMEPEEGCQGS(1)PQR;FVKDFQDYMEPEEGCQGS(1)PQR ;; 133.75 3.89E-07 1263210000 800510 1250650 1102120 758760 1589790 1360490 1773600 2314430 1044140 1109680 TRUE FALSE FALSE 978580.6878 1396902.638 1509840.051 800209.1375 1431504.926 1431723.153 1394655.871 1746812.414 1253689.321 833057.1981 1.174686072 1.676838807 1.812408625 0.960569261 1.718375315 1.718637275 1.674141793 2.09686972 1.50492586 1 19.66805603 FVKDFQDYMEPEEGCQGS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 FVKDFQDYMEPEEGCQGSPQR 21 1 O43237;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 FVKDFQDYMEPEEGCQGS(1)PQR 110.61 4.03E-05 278120000 278270 244210 212480 93483 390000 222270 300270 346170 180500 320030 TRUE FALSE FALSE 258764.71 224857.9102 294757.9464 217633.1484 341082.5634 194848.5873 225139.2701 267354.6478 196145.8853 239892.405 1.078669873 0.937328175 1.228708956 0.907211499 1.421814765 0.812233248 0.938501034 1.114477334 0.817641081 1 17.87202796 FVKDFQDYMEPEEGCQGS(ph)PQRR ddPTM_HeLa_A485_30min_R1 2 FVKDFQDYMEPEEGCQGSPQRR 22 2 O43237;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 FVKDFQDYMEPEEGCQGS(1)PQRR;FVKDFQDYMEPEEGCQGS(1)PQRR ; 206.88 2.23E-27 753550000 340540 540220 457820 242846 643610 595010 753980 1062810 426530 389190 TRUE FALSE FALSE 416291.9482 603394.0297 627186.6695 256112.0621 579529.9285 626163.8035 592886.0135 802154.1811 512130.6586 292172.0955 1.424817615 2.065200746 2.146634395 0.876579475 1.983522511 2.143133493 2.029235586 2.745485258 1.752839051 1 18.15645887 -5.972881977 24.99994205 2.050748255 1.663227197 0.056786169 0.524918864 502.4257827 463181.0645 0.159104087 0.180403352 1.06E-06 5.972881977 -0.387521057 FVKDFQDYMEPEEGCQGS(ph)PQRR ddPTM_HeLa_A486_30min_R1 3 FVKDFQDYMEPEEGCQGSPQRR 22 2 O43237;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 FVKDFQDYMEPEEGCQGS(1)PQRR;FVKDFQDYMEPEEGCQGS(1)PQRR;FVKDFQDYMEPEEGCQGS(1)PQRR ;; 145.18 8.51E-10 1024650000 629700 542950 473250 256468 866220 517020 772190 774240 421930 743240 TRUE FALSE FALSE 585561.2818 499924.6646 656505.0741 597070.4652 757570.6104 453235.3291 578979.8946 597962.4535 458503.2321 557127.8663 1.051035709 0.897324824 1.178374147 1.071693773 1.359778708 0.813521198 1.039222645 1.073294821 0.822976663 1 19.08764895 -6.299000124 24.99966256 0.959972769 1.101223363 0.26495967 0.133682173 942.5847609 627362.2752 0.04771104 0.042077949 5.02E-07 6.299000124 0.141250594 FVLHTNYPGHYNFNIYHR ddPTM_HeLa_A485_30min_R1 1 FVLHTNYPGHYNFNIYHR 18 0 Q9BSU1 Q9BSU1 C16orf70 UPF0183 protein C16orf70 0 0 127.75 1.11E-06 6250700 9110.8 7476.5 8917.7 7949.8 10716 6536 9015.9 8594.4 7516.3 11134 FALSE FALSE TRUE 11137.46603 8350.811638 12216.72833 8384.077444 9649.077414 6878.214853 7089.579312 6486.609925 9024.752466 8358.498706 1.332472065 0.999080329 1.461593613 1.003060207 1.154403171 0.82290075 0.848188121 0.776049642 1.07970974 1 13.02902812 -5.927969863 1.698101099 0.89057314 1.22336247 0.456817228 0.1538177 0.308928996 1.824561294 0.055172612 0.064488442 1.18E-06 5.927969863 0.33278933 FVLMAT(ph)PNLSR ddPTM_HeLa_A485_30min_R1 4 FVLMATPNLSR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 FVLMAT(0.999)PNLS(0.001)R;FVLMAT(1)PNLSR;FVLMAT(0.984)PNLS(0.016)R;FVLMAT(1)PNLSR ;;; 178.22 5.46E-09 1001456000 654426 863575 795337 608708 907679 839041 978632 1033666 703605 868850 TRUE FALSE FALSE 800000.806 964562.5841 1089565.253 641960.1767 817307.2917 882971.8894 769539.2785 780157.7928 844812.0697 652261.685 1.226502835 1.47879694 1.670441907 0.98420648 1.253035876 1.353708043 1.179801445 1.196080976 1.295204193 1 19.31509136 -10.06651121 0.045302623 2.33E-07 2.142806378 0.256234967 0.168461532 355.3536909 3.027827332 92.54311177 53.61596128 8.58E-11 10.06651121 2.142806145 FVLMAT(ph)PNLSR ddPTM_HeLa_A486_30min_R1 4 FVLMATPNLSR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 FVLMAT(1)PNLSR;FVLMAT(1)PNLSR;FVLMAT(0.988)PNLS(0.012)R;FVLMAT(0.986)PNLS(0.014)R ;;; 156.81 1.27E-06 940712000 711514 796837 741295 255432 943679 684118 771110 751689 703101 753826 TRUE FALSE FALSE 661640.5429 733692.7341 1028344.277 594658.6048 825313.9804 599718.4768 578170.122 580545.824 764046.3608 565063.063 1.170914516 1.298426286 1.819875238 1.052375644 1.460569686 1.06133017 1.023195746 1.027400058 1.352143523 1 19.10805236 -6.27009075 24.67768909 1.090175253 1.365397849 0.288158081 0.210218273 714.1983628 2037216.612 0.07295748 0.06534663 5.37E-07 6.27009075 0.275222595 FVLSSGK ddPTM_HeLa_A485_30min_R1 2 FVLSSGK 7 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ; ; 135.35 0.0048951 129547000 327520 400320 344340 333350 476420 445420 530480 557680 362290 487680 FALSE FALSE TRUE 400375.6941 447133.9417 471725.6952 351560.0664 428985.952 468741.5024 417138.6144 420908.1056 434998.2799 366110.3511 1.093592937 1.221309205 1.288479536 0.960257107 1.171739479 1.280328461 1.139379461 1.149675513 1.188161653 1 18.48191904 -10.56569073 2.854495664 0.990369036 1.167351142 0.235740354 0.089567196 18205245.54 18071697.54 1326455.152 0.02361627 2.72E-11 10.56569073 0.176982106 FVLSSGK ddPTM_HeLa_A486_30min_R1 2 FVLSSGK 7 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ; ; 116.54 0.013681 86018000 120294 130545 92824 43783 141949 129680 145912 142321 110357 169266 FALSE FALSE TRUE 111862.0118 120200.1388 128767.9387 101929.0367 124144.4328 113681.4001 109403.2743 109917.6151 119922.8336 126880.6919 0.881631477 0.947347756 1.014874185 0.80334553 0.978434394 0.89597084 0.862253135 0.866306871 0.945162198 1 16.95311302 -3.906539991 11.79495909 0.917391703 0.429344579 0.029307234 0.063903871 1028119.318 3311350.481 0.015471185 12307441.02 0.000124011 3.906539991 -0.488047124 FVMLLPSSTHTIPFYPNPLHPRPFPSSR ddPTM_HeLa_A485_30min_R1 1 FVMLLPSSTHTIPFYPNPLHPRPFPSSR 28 1 Q9Y3I1-3;Q9Y3I1-2;Q9Y3I1 Q9Y3I1-3 FBXO7 F-box only protein 7 0 0 50.498 0.021181 4807200 993.31 2541.7 2909.9 1550.7 4111.6 1883.8 3710.6 4746.1 2438.4 2054.3 FALSE FALSE TRUE 1214.268383 2838.929705 3986.393101 1635.410814 3702.234667 1982.432855 2917.799997 3582.111533 2927.764514 1542.200817 0.787360744 1.840830114 2.584872903 1.060439598 2.400617758 1.285457013 1.891971503 2.322727037 1.898432735 1 10.59077492 -4.262283702 8.169430275 1.856824278 0.779690669 0.251375184 0.523517079 0.112555253 102.8729531 0.121360465 0.683973086 5.47E-05 4.262283702 -1.077133609 FVNVVPTFGK(ac)K ddPTM_HeLa_A485_30min_R1 2 FVNVVPTFGKK 11 1 E9PR30;P62861 E9PR30 FAU 40S ribosomal protein S30 0 1 ; FVNVVPTFGK(1)K;FVNVVPTFGK(1)K 197.21 1.68E-13 787240000 2083360 2489800 2016030 2086610 2924800 2437500 3183200 3390900 2121280 2996800 FALSE TRUE FALSE 2546796.244 2780960.452 2761843.391 2200596.221 2633596.642 2565123.731 2503083.316 2559276.458 2547001.438 2249752.912 1.132033758 1.23611817 1.227620765 0.978150182 1.17061595 1.140180203 1.112603656 1.137581129 1.132124966 1 21.10133513 -14 0.127856922 0.547832581 1.200216725 0.305155104 0.066038067 193.6122949 1.568829735 22.64969505 0.54756058 1.00E-14 14 0.652384144 FVNVVPTFGK(ac)K ddPTM_HeLa_A486_30min_R1 2 FVNVVPTFGKK 11 1 E9PR30;P62861 E9PR30 FAU 40S ribosomal protein S30 0 1 ; FVNVVPTFGK(1)K;FVNVVPTFGK(1)K 212.72 1.25E-19 746400000 2851100 2830800 1850910 836260 2893500 2605900 2971900 3026000 2243400 3015700 FALSE TRUE FALSE 2651252.613 2606477.098 2567631.921 1946855.542 2530570.249 2284410.553 2228299.186 2337045.857 2437859.718 2260549.091 1.172835672 1.15302831 1.135844354 0.86123126 1.119449367 1.010555604 0.985733597 1.033839905 1.078436973 1 21.10824182 -5.029421868 24.72143958 1.015938224 1.158308135 0.511551056 0.06348985 447.3854659 375911.4573 0.016514584 0.028671256 9.34E-06 5.029421868 0.142369911 FVPAENDSILMNPAQDGEVQLS(ph)QNDDK ddPTM_HeLa_A485_30min_R1 1 FVPAENDSILMNPAQDGEVQLSQNDDK 27 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 FVPAENDSILMNPAQDGEVQLS(1)QNDDK 58.434 0.018843 72026000 16722 41004 75548 3816.5 48100 29621 19062 17804 48118 7281.5 TRUE FALSE FALSE 20441.75121 45799.06111 103496.349 4024.985731 43310.99511 31171.90976 14989.24798 13437.54108 57774.84124 5466.356056 3.739557211 8.378353083 18.93333474 0.736319715 7.923193196 5.702502625 2.742091409 2.458226458 10.56916905 1 12.41636372 -5.30994144 24.9996068 4.634189414 10.15326928 0.261842155 4.530719351 539.3388301 277992.366 1.266409462 1.878392429 4.90E-06 5.30994144 5.519079868 FVQDHFDHNIS(ph)PTIGASFMTK ddPTM_HeLa_A485_30min_R1 2 FVQDHFDHNISPTIGASFMTK 21 0 J3QR51;Q13636 J3QR51 RAB31 Ras-related protein Rab-31 1 0 FVQDHFDHNIS(0.821)PT(0.179)IGASFMTK;FVQDHFDHNIS(1)PTIGASFMTK ; 248.47 5.13E-47 1074940000 683900 655300 413060 708110 524550 717020 889510 1039680 526180 1343680 TRUE FALSE FALSE 836031.1956 731931.6346 565868.0829 746792.2563 472323.9602 754562.0585 699458.9219 784696.8498 631779.4996 1008725.305 0.828799666 0.725600549 0.560973419 0.740332629 0.468238437 0.748035223 0.69340872 0.777909354 0.626314713 1 19.94410192 -11.63915108 0.47825869 1.649175993 0.678770108 0.457745597 0.102271028 132.3275246 6.192479967 88.805519 0.05116403 2.30E-12 11.63915108 -0.970405885 FVQDHFDHNIS(ph)PTIGASFMTK ddPTM_HeLa_A486_30min_R1 2 FVQDHFDHNISPTIGASFMTK 21 0 J3QR51;Q13636 J3QR51 RAB31 Ras-related protein Rab-31 1 0 FVQDHFDHNIS(0.998)PT(0.002)IGASFMTK;FVQDHFDHNIS(0.5)PT(0.5)IGASFMTK ; 294.36 3.87E-87 1177310000 975850 954850 726250 398110 1134740 1011990 964930 926690 1122150 1392860 TRUE FALSE FALSE 907447.9543 879184.2085 1007473.45 926820.1994 992410.3282 887140.963 723494.308 715702.9165 1219418.866 1044078.79 0.869137428 0.842066918 0.964940059 0.887691818 0.950512871 0.849687755 0.692949914 0.685487459 1.16793759 1 19.99379916 -6.390982409 11.43043712 0.847707468 0.902072642 0 0.136819906 2.224233725 193.3465998 0.048199626 0.042495564 4.06E-07 6.390982409 0.054365174 FVQKPYS(ph)R ddPTM_HeLa_A485_30min_R1 1 FVQKPYSR 8 1 A0A2R8YFA1;A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3 A0A2R8YFA1 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 FVQKPYS(1)R 65.241 0.011303 492250000 419830 434600 351200 483420 577470 491820 691750 807890 427600 590040 TRUE FALSE FALSE 513219.7351 485422.6895 481123.4947 509828.0105 519975.0592 517570.9347 543951.9614 609753.7108 513415.3978 442953.8869 1.158630165 1.095876352 1.086170613 1.150973105 1.173880791 1.168453309 1.228010358 1.376562502 1.159071888 1 18.75679699 -5.962045453 1.435467174 1.215745052 1.113746911 0.070926332 0.089923333 0.696347694 2.960316425 0.035915012 0.04157487 1.09E-06 5.962045453 -0.10199814 FVQKPYS(ph)R ddPTM_HeLa_A486_30min_R1 1 FVQKPYSR 8 1 A0A2R8YFA1;A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3 A0A2R8YFA1 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 FVQKPY(0.018)S(0.982)R 48.442 0.028356 625580000 927850 838250 557590 274400 980700 989500 1167800 1206700 773570 1218200 TRUE FALSE FALSE 862812.5064 771824.0171 773503.7808 638817.0674 857691.4613 867425.5505 875604.0883 931960.7521 840623.6704 913154.7908 0.944869933 0.845228021 0.847067538 0.699571501 0.939261853 0.949921699 0.958878053 1.020594494 0.920570837 1 19.80049991 -5.977234708 24.99809986 0.967697324 0.833833693 0.529374599 0.060923378 188.5237451 207013.064 0.019126302 0.02168594 1.05E-06 5.977234708 -0.133863631 FVQLINTVLNGDQHFMSALDK ddPTM_HeLa_A485_30min_R1 1 FVQLINTVLNGDQHFMSALDK 21 0 Q5T2B5;A0A0A0MTN0;Q13617;Q13617-2 Q5T2B5 CUL2 Cullin-2 0 0 133.26 2.67E-09 3567200 4606.8 4765.5 4500.7 5048.5 6389 6080.8 6653.2 6638.5 4982.3 7310.6 FALSE FALSE TRUE 5631.566767 5322.783771 6165.69622 5324.286772 5752.888727 6399.181285 5231.689468 5010.397466 5982.20191 5488.201962 1.026122363 0.969859311 1.123445577 0.970133171 1.048228321 1.165988666 0.953261105 0.912939703 1.090011255 1 12.42211786 FVS(ph)EGDGGR ddPTM_HeLa_A485_30min_R1 9 FVSEGDGGR 9 0 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR ;;;;;;;; 198.02 1.05E-09 32816230000 12929510 16000150 16281740 13733620 19990260 12561960 15289460 15339190 13335940 15406850 TRUE FALSE FALSE 15805634.89 17871228.36 22305033.17 14483852.89 17999959.52 13219684.8 12022741.97 11577229.6 16012340.83 11566205.84 1.366535847 1.54512453 1.928465867 1.252256193 1.556254469 1.142957767 1.039471555 1.000953101 1.38440739 1 23.46341235 -6.288410141 4.933361414 1.10494182 1.538835573 0.539738159 0.192107815 0.156349604 10.48119897 0.068325329 0.062014819 5.15E-07 6.288410141 0.433893753 FVS(ph)EGDGGR ddPTM_HeLa_A486_30min_R1 8 FVSEGDGGR 9 0 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR ;;;;;;; 198.02 1.05E-09 35715390000 11873320 13454230 11999080 4100837 15017820 12006250 13560130 13170190 9903180 11785120 TRUE FALSE FALSE 11041061.58 12388067.82 16645445.12 9546955.781 13134144.98 10525040.95 10167242.05 10171625.24 10761595.62 8834049.244 1.249830206 1.402309119 1.884237303 1.08069986 1.48676384 1.191417509 1.150915256 1.151411426 1.218195113 1 23.07464344 -6.227492921 1.092133513 1.125751009 1.460730222 0.324837164 0.199024426 0.610380727 1.522101543 0.105017897 0.097944274 5.92E-07 6.227492921 0.334979213 FVS(ph)FTSR ddPTM_HeLa_A485_30min_R1 6 FVSFTSR 7 0 Q8N5V2-3;Q8N5V2 Q8N5V2-3 NGEF Ephexin-1 1 0 FVS(0.999)FT(0.001)SR;FVS(0.898)FT(0.094)S(0.008)R;FVS(0.987)FT(0.012)SR;FVS(0.99)FT(0.009)S(0.001)R;FVS(0.982)FT(0.018)SR;FVS(0.999)FT(0.001)SR ;;;;; 144.09 0.00035317 665952000 537115 536759 653749 538161 848470 407835 772622 841449 899110 870800 TRUE FALSE FALSE 656594.3787 599528.2959 895597.9599 567559.3727 763993.3476 429188.61 607544.998 635082.3134 1079553.13 653725.5859 1.004388375 0.917094739 1.36999068 0.868192075 1.168675916 0.656527172 0.929357839 0.971481501 1.65138577 1 19.31832564 -7.707096635 24.99993854 1.3256967 0.985564929 0.260899528 0.22889016 101.5133497 46700.18702 0.14784822 0.055881256 1.96E-08 7.707096635 -0.340131772 FVS(ph)FTSR ddPTM_HeLa_A486_30min_R1 6 FVSFTSR 7 0 Q8N5V2-3;Q8N5V2 Q8N5V2-3 NGEF Ephexin-1 1 0 FVS(0.864)FT(0.126)S(0.01)R;FVS(0.981)FT(0.019)SR;FVS(0.951)FT(0.049)SR;FVS(0.916)FT(0.084)SR;FVS(0.983)FT(0.017)SR;FVS(0.909)FT(0.091)SR ;;;;; 150.36 0.00091279 1152432000 737461 855126 658937 274152 728275 867036 1056174 1230390 603255 635700 TRUE FALSE FALSE 685768.7922 787362.7014 914095.0533 638239.7109 636927.9586 760069.9137 791908.0941 950257.0562 655545.6291 476516.5823 1.439128915 1.65233012 1.918285926 1.339386151 1.336633356 1.595054489 1.661868912 1.994174162 1.375703708 1 18.86216689 -8.007877555 24.84039157 0.999999965 1.615125733 0.462786575 0.205941973 267.0283087 842026.1026 0.208316642 0.053787126 9.82E-09 8.007877555 0.615125768 FVSEDDRNS(ph)FTLK ddPTM_HeLa_A485_30min_R1 1 FVSEDDRNSFTLK 13 1 A0A087WYC1;P34932 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 FVSEDDRNS(1)FTLK 181.51 2.09E-17 268020000 312380 324150 287660 386830 440980 409910 527720 520110 348840 580370 TRUE FALSE FALSE 381867.8533 362056.5228 394077.4045 407961.5434 397074.4828 431372.2538 414968.3109 392552.207 418848.9882 435694.4399 0.876457945 0.830987246 0.904481142 0.93634783 0.911359996 0.990079777 0.952429668 0.900980529 0.961336547 1 18.73295718 -5.101304198 1.739674459 0.949077932 0.85186757 0.605663026 0.031031587 0.257911121 1.503364891 0.009367657 0.023905205 7.92E-06 5.101304198 -0.097210362 FVSEDDRNS(ph)FTLK ddPTM_HeLa_A486_30min_R1 4 FVSEDDRNSFTLK 13 1 A0A087WYC1;P34932 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 FVSEDDRNS(0.959)FT(0.041)LK;FVSEDDRNS(0.987)FT(0.013)LK;FVSEDDRNS(1)FTLK;FVSEDDRNS(1)FTLK ;;; 181.51 2.09E-17 1046148000 1746650 1714260 1016132 778263 1678830 1839260 2118480 2099440 1308260 2315220 TRUE FALSE FALSE 1624218.855 1578415.794 1409605.523 1811835.595 1468255.487 1612350.801 1588413.897 1621443.342 1421661.03 1735473.842 0.935893596 0.909501345 0.812230924 1.044000521 0.846025708 0.929055087 0.915262367 0.934294314 0.819177446 1 20.72689819 -10.80742517 5.732756644 1.007345957 0.906667476 0.163770818 0.064273691 0.006032183 0.000202633 0.062208042 0.014116255 1.56E-11 10.80742517 -0.100678481 FVSISDLLVPK ddPTM_HeLa_A485_30min_R1 1 FVSISDLLVPK 11 0 P50395-2;P50395 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 109.66 0.0072395 8521700 6574.1 8760.1 5982 7014 8026.1 8333.4 10897 9932.2 6760.5 11263 FALSE FALSE TRUE 8036.485865 9784.517492 8194.990732 7397.15706 7226.993303 8769.723938 8568.76693 7496.312377 8117.270339 8455.34138 0.950462613 1.15719958 0.969208736 0.874850196 0.854725194 1.037181533 1.013414662 0.88657714 0.960016867 1 13.04564729 -4.9789056 24.64072462 0.942932847 1.056174467 0.246129842 0.073737302 253.5129373 296128.4747 0.019358394 0.040291824 1.05E-05 4.9789056 0.11324162 FVST(ph)PFHEIMSLK ddPTM_HeLa_A486_30min_R1 1 FVSTPFHEIMSLK 13 0 O60566-3;O60566 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 FVS(0.442)T(0.558)PFHEIMSLK 121.31 9.00E-05 9272000 42641 48116 37527 14116 52829 54347 51313 49246 44669 42842 TRUE FALSE FALSE 39652.0861 44303.11292 52058.45941 32862.76138 46202.69421 47642.2197 38473.94467 38033.76083 48540.94489 32114.08435 1.234725726 1.379553982 1.621047602 1.023313043 1.438705015 1.483530378 1.198039597 1.184332719 1.511515769 1 14.97091854 -11.05315821 2.425036454 0.542771998 1.339788643 0.261822586 0.172069345 13666792.76 3741230.244 34687047.17 0.041932982 8.85E-12 11.05315821 0.797016645 FVT(ph)PLKEALEAYR ddPTM_HeLa_A486_30min_R1 2 FVTPLKEALEAYR 13 1 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 1 0 FVT(1)PLKEALEAYR;FVT(1)PLKEALEAYR ; 117.37 0.00018851 35734000 94922 103257 57179 47795 102617 114352 126029 127975 85920 127470 TRUE FALSE FALSE 88268.45798 95074.53926 79320.24011 111269.1754 89745.81899 100244.4129 94495.2112 98837.88617 93367.61478 95550.68231 0.923786789 0.995016854 0.830137872 1.164504248 0.939248332 1.049122941 0.988953809 1.034402725 0.977152779 1 16.54397855 -5.240837998 24.99970342 1.019661783 0.924184162 0.337513972 0.067475663 990.5635686 1202043.471 0.017059046 0.029506979 5.74E-06 5.240837998 -0.09547762 FVT(ph)PLKEALEAYRR ddPTM_HeLa_A485_30min_R1 1 FVTPLKEALEAYRR 14 2 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 1 0 FVT(1)PLKEALEAYRR 75.97 0.0070398 32309000 21822 27411 17504 28060 35807 30747 44660 53797 23562 29526 TRUE FALSE FALSE 26676.22861 30616.47801 23979.458 29592.84675 32241.92935 32356.86538 35118.02616 40603.2014 28290.67728 22165.71159 1.203490739 1.38125401 1.081826672 1.335073166 1.454585802 1.459771109 1.58434012 1.831802297 1.276326148 1 14.43604206 -5.663795214 3.10318423 1.48744908 1.234349762 0.137017291 0.214140752 0.383843116 7.387543873 0.064828047 0.085486639 2.17E-06 5.663795214 -0.253099318 FVT(ph)PLKEALEAYRR ddPTM_HeLa_A486_30min_R1 1 FVTPLKEALEAYRR 14 2 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 1 0 FVT(1)PLKEALEAYRR 78.225 0.005819 45313000 12024 11225 9268.2 294500 13214 14309 18438 13631 4888.7 23913 TRUE FALSE FALSE 11181.17969 10335.49012 12857.09525 685610.8832 11556.5769 12543.70106 13824.61738 10527.51886 5312.456452 17925.02915 0.623774701 0.576595443 0.717270535 38.24880157 0.644717328 0.699786927 0.771246577 0.587308326 0.296370868 1 14.12968784 FVVGSHVR ddPTM_HeLa_A485_30min_R1 1 FVVGSHVR 8 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 84.568 0.017354 12011000 4885.6 12433 17553 4281.7 11551 11238 8128.6 10160 10414 6572.9 FALSE FALSE TRUE 5972.384865 13886.9312 24046.58514 4515.598429 10400.94188 11826.4043 6391.858205 7668.24407 12503.99428 4934.396995 1.210357592 2.8143117 4.87325709 0.915126698 2.107844564 2.396727364 1.295367643 1.554038736 2.534047076 1 12.26865808 -5.313769381 24.99999385 1.740143344 2.950828841 0.266662833 0.969594464 461.24525 220353.0246 0.274416941 0.407026538 4.86E-06 5.313769381 1.210685497 FVYTCNECK(ac)HHVETR ddPTM_HeLa_A485_30min_R1 2 FVYTCNECKHHVETR 15 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; FVYTCNECK(1)HHVETR;FVYTCNECK(1)HHVETR 208.92 7.26E-17 312780000 182491 206860 286740 253700 368010 201800 278540 209050 349810 419650 FALSE TRUE FALSE 223085.4934 231050.4776 392817.0582 267558.9886 331369.6322 212365.936 219027.6535 157780.1597 420013.6584 315038.9781 0.708120293 0.733402828 1.246883991 0.849288524 1.051836932 0.674094162 0.695239855 0.500827424 1.333211722 1 18.26517081 -4.559928442 24.99996765 0.893524036 0.714437179 0.088306443 0.244593954 398.204788 268694.7059 0.062564322 0.165530599 2.75E-05 4.559928442 -0.179086856 FVYTCNECK(ac)HHVETR ddPTM_HeLa_A486_30min_R1 2 FVYTCNECKHHVETR 15 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; FVYTCNECK(1)HHVETR;FVYTCNECK(1)HHVETR 206.1 1.44E-16 444350000 227160 334530 292640 88705 359050 305560 356860 336090 302890 290240 FALSE TRUE FALSE 211237.2571 308020.6245 405958.0452 206509.7229 314014.601 267863.1139 267569.8535 259569.6438 329144.7491 217562.0149 0.970928943 1.415783103 1.865941743 0.949199349 1.44333376 1.231203499 1.22985556 1.193083471 1.512877831 1 17.73106717 -5.310621748 24.99989408 1.240672538 1.417379328 0.104833958 0.257108502 926.3536356 470872.8095 0.071443811 0.105968542 4.89E-06 5.310621748 0.17670679 FWEVISDEHGIDPTGTYHGDSDLQLDR ddPTM_HeLa_A485_30min_R1 3 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 0 ;; ;; 262.79 6.76E-63 1226676000 189087.2 293004.4 280031.7 159392 313554 242510.8 295833 351872 262379.9 295010 FALSE FALSE TRUE 231148.9953 327268.7158 383627.0789 168099.1814 282335.4628 255208.2905 232625.8628 265574.8403 315037.1392 221469.4363 1.043706072 1.477715035 1.732189712 0.759017516 1.27482811 1.152340904 1.050374565 1.199148943 1.42248585 1 17.75674809 -5.253074567 24.99880996 1.135470004 1.423854709 0.260580594 0.227141533 895.5607204 2676438.829 0.06151146 0.104338143 5.58E-06 5.253074567 0.288384704 FWEVISDEHGIDPTGTYHGDSDLQLDR ddPTM_HeLa_A486_30min_R1 6 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 0 ;;;;; ;;;;; 348.5 2.67E-145 2648439000 803394 921061 822523 117020.3 1196714 795257 872986 963783 821856 696548 FALSE FALSE TRUE 747080.2293 848072.7719 1141025.934 272429.1723 1046610.971 697146.2769 654555.6693 744350.6501 893095.1398 522127.847 1.430837741 1.624262672 2.185338208 0.521767176 2.00451092 1.335202251 1.253631027 1.425609943 1.7104913 1 18.99404358 -12.31223504 0.221038267 1.57E-23 1.56461071 0.101233617 0.430623887 163.2611365 3.188786555 77.64277054 0.830078777 4.87E-13 12.31223504 1.56461071 FWEVISDEHGIDPTGTYHGDSDLQLER ddPTM_HeLa_A486_30min_R1 1 FWEVISDEHGIDPTGTYHGDSDLQLER 27 0 P68371;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0QZL7;M0R278;P04350;M0QYM7 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 323.41 7.13E-109 416440000 114590 124390 115070 23421 166670 105850 122680 123630 114790 93656 FALSE FALSE TRUE 106557.8327 114532.8834 159628.1857 54525.27163 145764.6945 92791.3032 91984.16642 95482.14782 124740.0896 70203.928 1.517832916 1.631431269 2.273778551 0.776669813 2.076303971 1.321739479 1.310242447 1.360068454 1.776824932 1 16.09926413 -12.04943983 0.134772309 1.40E-10 1.803729636 0.150574161 0.400194159 143.7185619 2.018369849 45.80983293 3.000871479 8.92E-13 12.04943983 1.803729636 FWSFFLR ddPTM_HeLa_A485_30min_R1 2 FWSFFLR 7 0 Q6PKG0;Q6PKG0-3;Q659C4-7;Q659C4-6;Q659C4-5;A0A3B3ISF0;Q659C4-9;Q659C4;Q659C4-2 Q6PKG0;A0A3B3ISF0 LARP1;LARP1B La-related protein 1;La-related protein 1B 0 0 ; ; 187.72 2.09E-05 97570000 59440 70000 87215 68842 107028 47561 92972 67378 58126 102932 FALSE FALSE TRUE 72662.22293 78185.89108 119479.4578 72602.66414 96371.91652 50051.22042 73107.77269 50853.43986 69791.35504 77272.94672 0.940331979 1.01181454 1.546200357 0.939561221 1.247162437 0.647719836 0.946097901 0.65810147 0.903179677 1 16.23767579 -6.254523427 24.97327157 0.8168435 1.141821544 0.37726596 0.196096116 556.6339255 2009988.066 0.063810672 0.062462412 5.57E-07 6.254523427 0.324978044 FWSFFLR ddPTM_HeLa_A486_30min_R1 2 FWSFFLR 7 0 Q6PKG0;Q6PKG0-3;Q659C4-7;Q659C4-6;Q659C4-5;A0A3B3ISF0;Q659C4-9;Q659C4;Q659C4-2 Q6PKG0;A0A3B3ISF0 LARP1;LARP1B La-related protein 1;La-related protein 1B 0 0 ; ; 191.91 5.22E-06 103713000 72336 94166 79380 34146 85085 89111 106471 93473 88202 96749 FALSE FALSE TRUE 67265.61994 86703.94321 110118.0619 79493.61364 74412.84591 78117.39083 79830.82966 72191.2384 95847.42038 72522.42067 0.92751482 1.195546735 1.518400253 1.096124659 1.02606677 1.077148144 1.100774477 0.995433381 1.321624671 1 16.14613946 -5.480731298 24.99988678 1.08448563 1.22787141 0.115086361 0.158335388 966.0893541 573038.0108 0.04485322 0.066521147 3.31E-06 5.480731298 0.14338578 FWTHWNR ddPTM_HeLa_A485_30min_R1 2 FWTHWNR 7 0 Q15428 Q15428 SF3A2 Splicing factor 3A subunit 2 0 0 ; ; 154.35 0.00088519 174251000 93148 130106 138418 90126.3 158395 130659 171089 167859 92201 109238 FALSE FALSE TRUE 113868.4512 145320.7649 189624.5783 95049.67156 142624.6376 137500.1032 134534.4375 126691.3171 110704.895 82006.97698 1.388521507 1.772053675 2.312298115 1.159043719 1.739176871 1.676687866 1.640524288 1.544884615 1.349944835 1 16.32345904 -8.047534022 0.937076207 0.996708173 1.695339472 0.364494547 0.277441078 0.699158264 1.373650018 0.264981677 0.090743328 8.96E-09 8.047534022 0.698631298 FWYFVSQLK ddPTM_HeLa_A485_30min_R1 2 FWYFVSQLK 9 0 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 247.94 9.78E-25 103237000 200337 123577 158218 298410 273860 106541 190609 116021 136141 363520 FALSE FALSE TRUE 244901.2745 138028.2552 216749.4222 314711.3827 246593.5368 112119.322 149883.83 87566.66784 163463.2499 272901.1541 0.89739919 0.505781134 0.794241501 1.153206492 0.903600198 0.410842242 0.549223877 0.320873205 0.598983359 1 18.05801897 -6.254304785 24.70498782 0.531866569 0.845328603 0.262866791 0.22403528 601.5662047 2083046.398 0.075751927 0.074192549 5.57E-07 6.254304785 0.313462035 FWYFVSQLK ddPTM_HeLa_A486_30min_R1 2 FWYFVSQLK 9 0 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 231.3 1.97E-23 123753000 211600 299940 205038 101055 284720 314760 349810 288600 264770 262290 FALSE FALSE TRUE 196767.9327 276171.662 284434.2047 235261.147 249007.7627 275928.1114 262283.8381 222892.0801 287720.4768 196610.8768 1.000798816 1.404661159 1.446686009 1.196582564 1.266500444 1.403422415 1.334025067 1.133671157 1.463400609 1 17.58498361 -10.04149798 5.252159147 0.999997245 1.298082163 0.280428408 0.141374954 4.37E-06 7.97E-07 0.13112255 0.031801596 9.09E-11 10.04149798 0.298084918 FWYFVSQLKK ddPTM_HeLa_A485_30min_R1 2 FWYFVSQLKK 10 1 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 174.73 3.39E-08 516570000 887090 614360 573420 1116480 1314180 577230 1167790 847610 499840 1380100 FALSE FALSE TRUE 1084420.11 686204.0578 785551.92 1177470.475 1183335.625 607452.8702 918282.1265 639732.3185 600153.3032 1036066.469 1.046670405 0.662316635 0.758206103 1.136481597 1.142142575 0.586306852 0.886315844 0.617462622 0.57926139 1 19.98268513 -6.2743625 24.99254653 0.719488669 0.933025358 0.241705753 0.188736057 1250.429615 2418249.851 0.069094261 0.061313785 5.32E-07 6.2743625 0.213536689 FWYFVSQLKK ddPTM_HeLa_A486_30min_R1 2 FWYFVSQLKK 10 1 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 177.78 2.92E-09 864570000 1139970 1633130 910190 816360 1689540 1760630 2668400 2079130 1362930 1978160 FALSE FALSE TRUE 1060063.99 1503714.831 1262639.944 1900527.337 1477622.139 1543421.371 2000738.097 1605757.486 1481069.87 1482815.86 0.714899279 1.014094111 0.851514998 1.281701516 0.996497393 1.040871906 1.349282908 1.082910919 0.998822517 1 20.49990802 -3.636276695 0.797823295 1.110297726 1.34E-11 0.412174718 0.133350786 5.934482664 1.432938646 0.048338172 7.366884466 0.000231059 3.636276695 -1.110297726 FYAFGR ddPTM_HeLa_A485_30min_R1 1 FYAFGR 6 0 P13639 P13639 EEF2 Elongation factor 2 0 0 105.82 0.036732 14322000 13892 18169 14507 13388 20703 14721 20758 20575 15701 20717 FALSE FALSE TRUE 16982.22747 20293.7065 19873.74299 14119.35254 18641.73663 15491.7688 16322.88372 15528.94899 18852.04668 15552.63317 1.09191976 1.304840555 1.277837828 0.907843218 1.198622537 0.996086555 1.049525411 0.99847716 1.21214501 1 13.92487124 -5.238495747 24.99333254 1.055450461 1.232863515 0.37624487 0.101876278 795.9530185 867059.5459 0.02613576 0.045231114 5.77E-06 5.238495747 0.177413054 FYALSASFEPFSNK ddPTM_HeLa_A485_30min_R1 2 FYALSASFEPFSNK 14 0 P27797 P27797 CALR Calreticulin 0 0 ; ; 285.83 9.68E-65 103977000 67721 53655.9 50646.4 78774 74129.2 70377 93492 88951 50077.3 108765 FALSE FALSE TRUE 82785.30282 59930.49076 69382.61093 83077.22415 66748.63656 74061.8309 73516.67044 67135.62778 60127.35477 81651.88717 1.013881071 0.733975574 0.849736771 1.017456265 0.817478185 0.907043713 0.90036707 0.822217711 0.73638659 1 16.31719861 -7.262681224 23.47169431 0.834476612 0.886365633 0.018809653 0.100273813 163.03898 3081367.904 0.049425444 0.02583534 5.46E-08 7.262681224 0.051889021 FYALSASFEPFSNK ddPTM_HeLa_A486_30min_R1 2 FYALSASFEPFSNK 14 0 P27797 P27797 CALR Calreticulin 0 0 ; ; 293.8 5.51E-65 131248000 106000 152855 115024 56053.8 158537 170840 195398 181529 153069 204245 FALSE FALSE TRUE 98569.94738 140742.2131 159564.3732 130496.0792 138651.8112 149763.4978 146507.3537 140198.8095 166337.1442 153100.7226 0.643824181 0.919278569 1.04221829 0.85235443 0.905624799 0.978202423 0.956934436 0.915729247 1.086455644 1 17.22412157 -4.273991149 4.060147954 0.959136492 0.620055289 0.690280914 0.064388276 0.120410774 4.269745237 0.015912186 0.117481354 5.32E-05 4.273991149 -0.339081204 FYCDYCDTYLTHDS(ph)PSVR ddPTM_HeLa_A485_30min_R1 2 FYCDYCDTYLTHDSPSVR 18 0 P09234;A0A0A0MRR7 P09234 SNRPC U1 small nuclear ribonucleoprotein C 1 0 FYCDYCDTYLTHDS(1)PSVR;FYCDYCDTYLTHDS(0.879)PS(0.121)VR ; 260.97 5.24E-58 909110000 501450 474840 625090 572780 866610 403770 516890 442090 591870 764230 TRUE FALSE FALSE 612995.8225 530368.4074 856336.8032 604069.521 780327.2655 424910.7729 406452.2289 333666.7343 710652.88 573721.5256 1.068455331 0.92443526 1.492600094 1.052896735 1.360115022 0.740621981 0.70844863 0.581583084 1.238672158 1 19.12999112 -6.272096318 24.99775272 0.818625567 1.175857748 0.337846082 0.225364803 781.0889174 1832178.598 0.077766561 0.069294322 5.34E-07 6.272096318 0.35723218 FYCDYCDTYLTHDS(ph)PSVR ddPTM_HeLa_A486_30min_R1 2 FYCDYCDTYLTHDSPSVR 18 0 P09234;A0A0A0MRR7 P09234 SNRPC U1 small nuclear ribonucleoprotein C 1 0 FYCDYCDTYLTHDS(0.968)PS(0.032)VR;FYCDYCDTYLTHDS(1)PSVR ; 247.64 7.40E-46 616030000 388600 631070 507140 155588 746840 542510 597950 611920 501830 445160 TRUE FALSE FALSE 361361.1467 581061.7149 703518.1897 362216.727 653164.3632 475580.632 448336.5855 472599.1741 545329.0285 333689.0385 1.082927831 1.741326948 2.108304764 1.085491836 1.957404313 1.425221021 1.343576006 1.416286181 1.634243159 1 18.34814477 -6.496373123 24.52962769 1.383385548 1.612205801 0.102827035 0.339424882 1453.682061 1345312.309 0.116510683 0.102405954 3.19E-07 6.496373123 0.228820253 FYCDYCDTYLTHDS(ph)PSVRK ddPTM_HeLa_A485_30min_R1 2 FYCDYCDTYLTHDSPSVRK 19 1 P09234;A0A0A0MRR7 P09234 SNRPC U1 small nuclear ribonucleoprotein C 1 0 FYCDYCDTYLTHDS(1)PSVRK;FYCDYCDTYLTHDS(1)PSVRK ; 314.26 1.12E-89 889770000 434390 366790 380960 504790 724530 389170 560380 538170 420810 609250 TRUE FALSE FALSE 531018.5569 409682.8999 521892.9571 532365.3995 652393.2492 409546.3394 440650.2351 406182.9637 505262.7071 457375.1874 1.16101304 0.895726115 1.141060931 1.163957762 1.426385312 0.895427541 0.963432751 0.888073894 1.104700738 1 18.80301858 FYCDYCDTYLTHDS(ph)PSVRK ddPTM_HeLa_A486_30min_R1 1 FYCDYCDTYLTHDSPSVRK 19 1 P09234;A0A0A0MRR7 P09234 SNRPC U1 small nuclear ribonucleoprotein C 1 0 FYCDYCDTYLT(0.002)HDS(0.997)PS(0.001)VRK 104.18 7.20E-05 354390000 485680 464050 329530 322630 546600 532200 821890 706790 406090 816970 TRUE FALSE FALSE 451636.3401 427276.988 457132.8411 751098.9448 478040.3312 466542.575 616244.4289 545869.3461 441290.2082 612395.3944 0.737491405 0.697714241 0.746466817 1.226493458 0.780607326 0.761832273 1.006285211 0.891367491 0.720596876 1 19.22410391 -5.03046712 24.99847203 0.906715405 0.718724543 0.272275444 0.139081928 867.8298322 712059.8283 0.037783109 0.065552922 9.32E-06 5.03046712 -0.187990861 FYDPS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 FYDPSPPR 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y802;A0A2R8Y4X4 Q3V6T2 CCDC88A Girdin 1 0 FYDPS(1)PPR;FYDPS(1)PPR ; 79.489 0.0095634 594910000 1486130 2076310 2036700 1498990 2354220 1868120 2155790 2453140 1764000 2009520 TRUE FALSE FALSE 1816714.491 2319116.393 2790160.084 1580876.028 2119825.591 1965931.875 1695187.855 1851503.569 2118018.62 1508583.646 1.204251747 1.537280613 1.849522955 1.047920698 1.405176038 1.303163984 1.12369497 1.227312501 1.403978244 1 20.52476326 -5.278170655 24.99978699 1.233045291 1.531044704 0.355585032 0.193027538 906.6944918 1354776.439 0.054006954 0.080353721 5.27E-06 5.278170655 0.297999413 FYDPS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 FYDPSPPR 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y802;A0A2R8Y4X4 Q3V6T2 CCDC88A Girdin 1 0 FYDPS(1)PPR;FYDPS(1)PPR;FY(0.001)DPS(0.999)PPR ;; 78.934 0.0099869 640250000 1261590 1466550 1221840 398253 1602020 1237930 1360340 1446110 1135820 1334370 TRUE FALSE FALSE 1173159.056 1350335.237 1694969.17 927153.1106 1401079.713 1085206.783 1019968.544 1116862.321 1234273.792 1000235.067 1.17288335 1.350017893 1.694570833 0.926935219 1.400750444 1.084951747 1.019728839 1.116599846 1.233983724 1 19.93190766 -5.274281087 24.91751353 1.123786691 1.400243438 0.378538465 0.172092335 786.2773898 1525658.12 0.048055954 0.071800074 5.32E-06 5.274281087 0.276456747 FYDS(ph)NTVK ddPTM_HeLa_A485_30min_R1 1 FYDSNTVK 8 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 FYDS(0.794)NT(0.206)VK 94.363 0.0032094 93851000 147410 129450 97592 187970 182950 150060 203490 215240 111460 226250 TRUE FALSE FALSE 180200.8459 144588.0514 133695.3419 198238.3251 164734.8556 157916.9096 160012.6991 162452.0525 133828.9996 169850.0388 1.060940858 0.851268875 0.787137541 1.167137355 0.969884121 0.929743147 0.942082205 0.956444012 0.787924457 1 17.37390202 -9.222250288 8.110158683 1.000080557 0.940040734 0.026546091 0.110389681 0 0 0.10670433 0.025879601 5.99E-10 9.222250288 -0.060039823 FYEEVHDLER ddPTM_HeLa_A485_30min_R1 4 FYEEVHDLER 10 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;P55209-3;F8W543;F8VUX1;F8VXI6;F8VRJ2;F8VVB5 C9J6D1;P55209 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 0 0 ;;; ;;; 170.89 8.87E-07 1843680000 1292380 1823300 1711150 1324060 2068370 1710950 1951830 2179300 1514770 1801530 FALSE FALSE TRUE 1579865.472 2036519.074 2344175.592 1396390.045 1862435.82 1800532.696 1534805.576 1644823.258 1818770.445 1352441.726 1.16815789 1.505809112 1.733291385 1.032495536 1.377091364 1.331319984 1.134840449 1.216187897 1.344805037 1 20.367135 -8.795559664 0.15070317 0.769866624 1.535803169 0.234677091 0.185545874 19.22748117 1.137897592 3.752723457 1.585062901 1.60E-09 8.795559664 0.765936544 FYEEVHDLER ddPTM_HeLa_A486_30min_R1 4 FYEEVHDLER 10 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;P55209-3;F8W543;F8VUX1;F8VXI6;F8VRJ2;F8VVB5 C9J6D1;P55209 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 0 0 ;;; ;;; 220.17 2.11E-16 1540410000 1558150 1813070 1568590 523795 2126100 1579720 1854610 1910170 1564280 1799310 FALSE FALSE TRUE 1448931.731 1669395.73 2175990.056 1219421.231 1859424.713 1384830.208 1390566.962 1475265.99 1699873.05 1348751.064 1.074276617 1.237734504 1.613337045 0.904111413 1.378627059 1.026750039 1.031003421 1.093801539 1.260331202 1 20.36319267 -5.909562694 1.35002215 1.094271186 1.264235129 0.110192348 0.190206205 0.942130758 3.580029337 0.07733851 0.094663127 1.23E-06 5.909562694 0.169963943 FYETKEES(ph)YSPSKDR ddPTM_HeLa_A486_30min_R1 1 FYETKEESYSPSKDR 15 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 FYET(0.005)KEES(0.481)YS(0.481)PS(0.033)KDR 58.693 0.014351 172300000 161360 125710 107420 206430 330200 240460 466700 497700 120490 313240 TRUE FALSE FALSE 150049.4973 115748.2818 149015.9008 480579.4724 288783.237 210794.49 349926.7238 384384.5747 130934.1702 234802.6651 0.63904512 0.492959829 0.63464314 2.046737724 1.229897611 0.897751692 1.490301328 1.637053713 0.557634941 1 17.84108926 -5.039107122 24.95105892 1.289019988 0.565451856 0.387127914 0.390063053 475.6525096 303474.5466 0.104023887 0.180218106 9.14E-06 5.039107122 -0.723568132 FYETKEESYS(ph)PSKDR ddPTM_HeLa_A485_30min_R1 1 FYETKEESYSPSKDR 15 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 FYETKEES(0.028)YS(0.954)PS(0.017)KDR 78.021 0.0025215 567610000 161660 152970 161890 364560 614820 396490 904770 1248700 274800 727700 TRUE FALSE FALSE 197620.7093 170858.5108 221779.8478 384474.9897 553606.362 417249.6033 711458.4982 942454.3671 329949.8394 546297.7823 0.361745399 0.312757101 0.405968787 0.703782812 1.013378381 0.763776857 1.302327268 1.725166013 0.603974334 1 19.05932804 -5.636401754 1.021355211 1.171473333 0.290911601 0.557241821 0.284166194 0.390128873 0.854264519 0.123845586 0.222207607 2.31E-06 5.636401754 -0.880561733 FYETKEESYS(ph)PSKDR ddPTM_HeLa_A486_30min_R1 2 FYETKEESYSPSKDR 15 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 FYET(0.001)KEES(0.053)Y(0.015)S(0.878)PS(0.053)KDR;FYET(0.001)KEES(0.182)YS(0.717)PS(0.1)KDR ; 60.062 0.012887 857430000 389930 310690 247000 511390 767850 565690 1096450 1170970 323850 766350 TRUE FALSE FALSE 362597.9206 286069.7929 342645.0149 1190541.764 671539.0931 495900.9193 822106.6129 904365.6931 351921.5788 574450.9719 0.631207776 0.497988178 0.596473906 2.072486291 1.169010283 0.86326065 1.431117107 1.574313105 0.612622479 1 19.13182424 -5.050633224 24.99755673 1.264426812 0.560254497 0.394109832 0.380853749 326.6479436 161265.1899 0.101885436 0.176473815 8.90E-06 5.050633224 -0.704172314 FYGDEEKDKGLQTSQDAR ddPTM_HeLa_A485_30min_R1 1 FYGDEEKDKGLQTSQDAR 18 2 P27797 P27797 CALR Calreticulin 0 0 58.123 0.034081 14757000 19149 21272 12924 23304 29891 31961 51968 67284 20613 39565 FALSE FALSE TRUE 23408.62899 23759.57536 17705.12541 24577.03851 26914.94709 33634.42854 40864.61226 50782.4935 24749.84003 29702.17364 0.788111647 0.799927158 0.596088543 0.827449156 0.906160856 1.132389466 1.37581218 1.709723137 0.833266963 1 14.85828089 -6.203851689 1.956488171 1.285023366 0.745374458 0.476430366 0.226149131 0.265171331 1.997480657 0.088307783 0.084276962 6.25E-07 6.203851689 -0.539648908 FYK(ac)DVLEVGELAK ddPTM_HeLa_A485_30min_R1 1 FYKDVLEVGELAK 13 1 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6 C9J5D1 NAA50 N-alpha-acetyltransferase 50 0 1 FYK(1)DVLEVGELAK 154.07 3.33E-06 0 4818.8 4112.6 4950.4 7618.8 6225.1 5319.8 6036.2 5065.3 3827.5 9583.3 FALSE TRUE FALSE 5890.725435 4593.532795 6781.758963 8034.995752 5605.307186 5598.336502 4746.516559 3823.027233 4595.644142 7194.359678 0.818797739 0.638490846 0.942649418 1.116846545 0.779125237 0.778156327 0.659755249 0.531392286 0.638784318 1 12.81265057 -6.427861137 2.353966429 0.671357734 0.867729806 0.151708624 0.160845133 0.482163045 5.261179539 0.068320675 0.056599824 3.73E-07 6.427861137 0.196372072 FYK(ac)DVLEVGELAK ddPTM_HeLa_A486_30min_R1 1 FYKDVLEVGELAK 13 1 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6 C9J5D1 NAA50 N-alpha-acetyltransferase 50 0 1 FYK(1)DVLEVGELAK 192.86 1.68E-10 21901000 32427 46448 27957 16788 36075 52992 45726 44447 41992 51191 FALSE TRUE FALSE 30154.03475 42767.29132 38782.69911 39083.31242 31550.13711 46454.38582 34284.87116 34327.38837 45631.90037 38372.4404 0.785825307 1.114531442 1.010691494 1.018525588 0.822208251 1.210618489 0.893476433 0.894584447 1.189184214 1 15.2277829 -4.24287992 23.75245643 1.009736426 0.785824917 0.246498653 0.120686892 2940.399461 3763017.478 0.028678501 0.86988706 5.72E-05 4.24287992 -0.223911509 FYMFHS(ph)FKQFPRYVTGACCLFLAGKVEETPK ddPTM_HeLa_A486_30min_R1 1 FYMFHSFKQFPRYVTGACCLFLAGKVEETPK 31 3 G3V5E1;O75909-1;O75909;O75909-4;G3V2Q3;O75909-2 G3V5E1 CCNK Cyclin-K 1 0 FY(0.003)MFHS(0.493)FKQFPRY(0.01)VT(0.493)GACCLFLAGKVEETPK 45.671 0.025091 208890000 96922 98894 57705 10503 143900 103820 101100 118770 84694 42885 TRUE FALSE FALSE 90128.26831 91057.27927 80049.92139 24451.51479 125850.7202 91011.74396 75803.71067 91728.66373 92035.34411 32146.31687 2.803688792 2.832588245 2.490173967 0.760631922 3.914934352 2.831171743 2.358083851 2.853473513 2.863013654 1 14.97236583 -5.795893044 24.99999917 2.725236365 2.284562752 0.044618634 0.866472495 604.0752697 438321.1718 0.264834656 0.300308291 1.60E-06 5.795893044 -0.440673613 FYQGLPWGVSS(ph)LPR ddPTM_HeLa_A485_30min_R1 2 FYQGLPWGVSSLPR 14 0 Q5JTC6 Q5JTC6 AMER1 APC membrane recruitment protein 1 1 0 FYQGLPWGVS(0.017)S(0.983)LPR;FYQGLPWGVS(0.259)S(0.741)LPR ; 195.54 2.19E-18 269570000 476260 564930 535330 444650 667400 543450 719910 749980 479490 597510 TRUE FALSE FALSE 582202.3939 630993.6493 733370.8439 468940.1036 600951.3126 571904.2017 566095.3474 566046.2291 575719.2449 448561.7534 1.297931421 1.406704082 1.634938419 1.045430423 1.339729275 1.274973172 1.262023218 1.261913716 1.283478229 1 18.77494709 -13.98988066 0.100029823 9.23E-11 1.527068167 0.365799581 0.133264777 206.3102087 1.404523791 43.0280494 2.275740245 1.02E-14 13.98988066 1.527068167 FYQGLPWGVSS(ph)LPR ddPTM_HeLa_A486_30min_R1 2 FYQGLPWGVSSLPR 14 0 Q5JTC6 Q5JTC6 AMER1 APC membrane recruitment protein 1 1 0 FYQGLPWGVS(0.013)S(0.987)LPR;FYQGLPWGVS(0.291)S(0.709)LPR ; 179.56 2.72E-17 273830000 792600 938800 765420 306450 1053370 922760 967930 989260 825640 927200 TRUE FALSE FALSE 737042.833 864406.0689 1061811.123 713431.0871 921246.5123 808919.2531 725743.6763 764027.0934 897207.14 695023.0849 1.060458061 1.243708429 1.527735043 1.026485454 1.325490523 1.163873936 1.044200822 1.099283045 1.290902647 1 19.40670137 -6.513819875 22.48814867 1.115036921 1.241946323 0.143526801 0.147461009 236.7219654 587659.3216 0.053897995 0.044140437 3.06E-07 6.513819875 0.126909401 FYS(ph)DSHHLKR ddPTM_HeLa_A485_30min_R1 2 FYSDSHHLKR 10 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 FYS(1)DSHHLKR;FYS(0.999)DS(0.001)HHLKR ; 172.13 1.77E-07 514860000 397100 509150 357160 309270 564980 427760 552690 578600 360660 454030 TRUE FALSE FALSE 485433.525 568690.6635 489288.3467 326164.637 508728.6074 450156.8522 434603.2664 436697.4428 433041.1538 340848.6768 1.424190728 1.668454954 1.435500209 0.956919182 1.492535081 1.320694146 1.275062208 1.281206214 1.270479199 1 18.37877186 -1 0.050942669 0.435043893 2.978364866 0.37869141 0.160580376 537.2822988 2.068822111 23.99783105 106.7889244 0.1 1 2.543320974 FYS(ph)FIHMTFQEFFAAMY(ph)YLLEEEK ddPTM_HeLa_A486_30min_R1 1 FYSFIHMTFQEFFAAMYYLLEEEK 24 0 Q96P20-3;Q96P20-2;Q96P20-5;Q96P20-4;Q96P20-6;Q96P20;A0A2R8YEG7 Q96P20-3 NLRP3 "NACHT, LRR and PYD domains-containing protein 3" 2 0 FY(0.044)S(0.904)FIHMT(0.206)FQEFFAAMY(0.423)Y(0.423)LLEEEK 52.249 0.021161 387700000 205520 244110 63759 782610 112940 386080 314420 322380 97751 1260000 TRUE FALSE FALSE 191114.1093 224765.8346 88448.19233 1821955.631 98774.01208 338449.375 235748.7904 248981.1115 106224.1354 944487.7988 0.202346827 0.23797643 0.093646728 1.92904094 0.104579447 0.358341712 0.249604908 0.263614958 0.112467451 1 19.84917263 -10.18609232 4.043975745 1.000219908 0.408578334 0.107934591 0.520723778 721289523.7 1498350898 2876339.938 0.131896179 6.51E-11 10.18609232 -0.591641573 FYS(ph)TSLK ddPTM_HeLa_A485_30min_R1 4 FYSTSLK 7 0 A0A0C4DH43 A0A0C4DH43 1 0 FY(0.001)S(0.333)T(0.333)S(0.333)LK;FY(0.001)S(0.333)T(0.333)S(0.333)LK;FYS(0.333)T(0.333)S(0.333)LK;FY(0.002)S(0.333)T(0.333)S(0.333)LK ;;; 73.616 0.0181 351912000 329380 1292810 1825810 102272 1086080 914491 458053 779426 1169680 170440 TRUE FALSE FALSE 402649.4447 1443992.884 2501253.097 107858.8604 977946.0617 962372.3347 360186.2346 588270.5514 1404424.047 127952.4447 3.146867929 11.28538721 19.54830252 0.842960528 7.643043194 7.521328231 2.815000803 4.597571799 10.97614079 1 16.96524819 -5.286874354 24.99475736 5.323545443 11.32271042 0.269665817 4.714413079 1024.618598 1006882.658 1.326070821 1.967695032 5.17E-06 5.286874354 5.999164977 FYS(ph)TSLK ddPTM_HeLa_A486_30min_R1 3 FYSTSLK 7 0 A0A0C4DH43 A0A0C4DH43 1 0 FY(0.002)S(0.333)T(0.333)S(0.333)LK;FYS(0.333)T(0.333)S(0.333)LK;FYS(0.333)T(0.333)S(0.333)LK ;; 78.496 0.01399 470274000 172464 414238 803235 43759.9 715376 195702 150953.6 242784 368480 76198.2 TRUE FALSE FALSE 160375.1642 381412.2723 1114269.103 101875.2587 625646.8715 171558.277 113183.4127 187507.3831 400420.1431 57117.67475 2.807802749 6.677657553 19.50830646 1.783603047 10.95364743 3.003593506 1.981582989 3.282825919 7.010441948 1 15.80164963 -6.277145369 24.10853208 3.318733207 8.509034336 0.220151789 4.784802487 820.9815608 1260193.603 1.680457087 1.48757281 5.28E-07 6.277145369 5.190301129 FYSTS(ph)LK ddPTM_HeLa_A486_30min_R1 1 FYSTSLK 7 0 A0A0C4DH43 A0A0C4DH43 1 0 FYS(0.277)T(0.277)S(0.445)LK 79.116 0.013469 320220000 207530 497810 1111400 15919 900430 157920 101620 241490 469340 34625 TRUE FALSE FALSE 192983.2187 458361.7226 1541763.844 37060.2365 787489.6732 138437.436 76193.60117 186507.9987 510022.7691 25954.67463 7.435393487 17.66008356 59.40216421 1.427882916 30.34095724 5.333815122 2.935640776 7.185911646 19.65051677 1 14.66370678 -6.271615905 24.58224457 7.339949327 23.73830973 0.215752318 15.26820841 913.3640485 2206300.166 5.346557515 4.769639195 5.35E-07 6.271615905 16.39836041 FYVHNDIFR ddPTM_HeLa_A485_30min_R1 2 FYVHNDIFR 9 0 Q13283;E5RIZ6 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 0 ; ; 185.6 9.60E-09 103264000 92333 116087 123183 89323 138593 110209 131548 121186 106644 136643 FALSE FALSE TRUE 112872.1573 129662.3648 168753.5178 94202.48931 124794.1943 115979.3728 103441.6952 91464.94349 128046.4726 102580.4148 1.100328532 1.264007024 1.645085156 0.918328216 1.216549909 1.130619066 1.008396148 0.891641388 1.24825458 1 16.64639579 -5.288037974 24.99761513 1.062023941 1.329227075 0.368834502 0.166157047 797.9080752 749879.8577 0.046883134 0.069561784 5.15E-06 5.288037974 0.267203134 FYVHNDIFR ddPTM_HeLa_A486_30min_R1 4 FYVHNDIFR 9 0 Q13283;E5RIZ6 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 0 ;;; ;;; 154.56 0.00015885 1474967000 1393792 1519574 1264680 574644 2070655 1499697 1727973 1797821 1457814 1667211 FALSE FALSE TRUE 1296094.378 1399157.422 1754397.965 1337800.273 1810934.142 1314679.632 1295615.879 1388496.404 1584178.491 1249730.514 1.03709909 1.119567304 1.40382102 1.070471 1.449059715 1.051970499 1.036716208 1.111036651 1.267616077 1 20.2531856 FYWGHK ddPTM_HeLa_A485_30min_R1 2 FYWGHK 6 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ; ; 110.43 0.0072175 44528000 51169 57067 52720 54549 76328 59968 77909 71648 59605 78713 FALSE FALSE TRUE 62551.36752 63740.48923 72223.32186 57528.87374 68728.51632 63107.83175 61263.10569 54076.21566 71567.17677 59091.29771 1.058554643 1.078678108 1.222232793 0.973559153 1.163090319 1.067971668 1.036753432 0.915129939 1.211128873 1 15.85065806 -6.571664262 4.67256774 1.034737743 1.09950138 0.081215289 0.091531521 0.497499736 23.67925556 0.034113901 0.026481014 2.68E-07 6.571664262 0.064763637 FYWGHK ddPTM_HeLa_A486_30min_R1 1 FYWGHK 6 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 70.118 0.032504 16229000 11844 9740.7 7461.6 3535.6 13040 10317 10454 10458 8565.4 12817 FALSE FALSE TRUE 11013.79676 8968.811457 10350.93135 8231.055479 11404.40161 9044.193436 7838.298629 8076.941697 9307.855769 9607.539775 1.146370145 0.933518015 1.077375852 0.856728743 1.187026218 0.941364142 0.815848678 0.840687823 0.968807414 1 13.22995133 -6.513034854 24.90978055 0.890995158 1.029953497 0.272923798 0.102905198 576.4681178 1458748.536 0.035921274 0.029524669 3.07E-07 6.513034854 0.13895834 GAAAADLLS(ph)SSPESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_HeLa_A486_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 40 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 GAAAADLLS(0.345)S(0.323)S(0.323)PES(0.008)QHGGTQSPGGGQPLLQPTKVDAAEGR 67.487 0.0010322 598210000 36672 38892 26825 10945 49155 32414 51220 36130 26342 32604 TRUE FALSE FALSE 34101.48217 35810.05628 37212.3584 25480.51313 42989.52155 28415.09024 38404.21425 27903.98771 28625.34577 24439.74618 1.395328819 1.465238469 1.522616402 1.042585015 1.759000328 1.162658975 1.571383514 1.141746215 1.171261991 1 14.57694168 -7.372946825 6.55556668 1.109780149 1.41144978 0.353515452 0.193914086 0.278228709 14.31287915 0.100378016 0.047435774 4.24E-08 7.372946825 0.301669631 GAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTK ddPTM_HeLa_A485_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 33 0 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 GAAAADLLS(0.015)S(0.493)S(0.493)PESQHGGTQSPGGGQPLLQPTK 241.67 8.31E-51 627800000 246010 230600 276640 174200 337830 243220 255210 232920 293620 336490 TRUE FALSE FALSE 300734.0758 257566.664 378980.648 183716.1049 304194.459 255954.6231 200682.2986 175796.0048 352546.8408 252609.2356 1.190511008 1.01962489 1.500264418 0.727273904 1.20420957 1.01324333 0.794437694 0.695920734 1.395621343 1 17.94654786 -5.267918675 24.99637514 0.966663805 1.215082583 0.212034482 0.228936872 820.0813727 3163779.726 0.062909046 0.095792394 5.40E-06 5.267918675 0.248418778 GAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_HeLa_A485_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 40 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 GAAAADLLS(0.015)S(0.492)S(0.492)PES(0.001)QHGGTQSPGGGQPLLQPTKVDAAEGR 194.2 1.30E-22 362580000 59389 117830 83929 36020 109450 107890 117010 160040 76791 61332 TRUE FALSE FALSE 72599.87816 131609.1935 114977.8297 37987.68139 98552.7737 113538.9536 92009.85762 120789.9391 92202.24933 46043.06113 1.576782177 2.858393649 2.497180397 0.825046825 2.140447904 2.465929736 1.998343623 2.623412434 2.00252214 1 15.49069613 -8.037824986 23.09329149 0.999999986 2.136496435 0.268639177 0.552188733 3543.160484 2163203.593 0.541199495 0.139737108 9.17E-09 8.037824986 1.136496449 GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK ddPTM_HeLa_A485_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 33 0 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 GAAAADLLS(0.026)S(0.166)S(0.807)PESQHGGTQSPGGGQPLLQPTK 157.19 2.80E-10 671180000 221010 235180 286340 199850 353310 231000 281760 234020 287880 361970 TRUE FALSE FALSE 270172.912 262682.2552 392269.0816 210767.2995 318133.2159 243094.8028 221559.6742 176626.2281 345654.8754 271737.5406 0.994242133 0.966676355 1.443558666 0.7756282 1.170737084 0.894594108 0.815344372 0.649988322 1.272017384 1 18.05185436 -6.287025246 22.38249381 0.89757272 1.068799461 0.091550237 0.217150094 442.3431396 386958.283 0.074328057 0.065593673 5.16E-07 6.287025246 0.171226741 GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_HeLa_A486_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 40 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 GAAAADLLS(0.07)S(0.43)S(0.497)PES(0.003)QHGGTQSPGGGQPLLQPTKVDAAEGR 166.88 2.15E-15 479990000 208110 186940 135200 7789.7 230240 134980 159020 161660 123610 88720 TRUE FALSE FALSE 193522.5637 172126.1936 187553.0608 18134.81527 201361.1523 118327.54 119231.5141 124853.547 134324.6143 66503.93453 2.90994157 2.588210679 2.82017992 0.272687855 3.02780811 1.779256232 1.792849023 1.87738587 2.019799509 1 16.02115208 -1.000000118 0.425278466 1.708189086 27.51498807 0.243747371 0.727217246 118.9904398 1.512713018 0.472343487 2621.751045 0.099999973 1.000000118 25.80679899 GAAAHPDSEEQQQR ddPTM_HeLa_A486_30min_R1 2 GAAAHPDSEEQQQR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ; ; 163.51 1.44E-06 0 153494 168418 173975 47971 250950 145579 148944 164177 148999 139790 FALSE FALSE TRUE 142734.8632 155071.9443 241342.7792 111678.9123 219473.511 127618.9431 111676.6358 126797.4811 161914.3533 104785.6741 1.36216009 1.479896423 2.303203956 1.065784166 2.094499204 1.217904491 1.065762441 1.210065041 1.545195511 1 16.67708197 -6.448010989 24.21145959 1.211199378 1.653897312 0.290465854 0.354161675 127.6752237 41288.09001 0.119918186 0.10575784 3.56E-07 6.448010989 0.442697934 GAAAS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 GAAASPPR 8 0 F8WC22;F8WD19;C9J4K5;C9JSP0;H7C1C1;F8W8A5;Q9NYP3-2;Q9NYP3-3;Q9NYP3 F8WC22 DONSON Protein downstream neighbor of Son 1 0 GAAAS(1)PPR 70.856 0.010248 0 302100 372340 455930 91779 385040 290160 282180 281370 315750 289360 TRUE FALSE FALSE 280924.35 342834.4224 632478.3062 213666.1503 336744.6928 254363.0093 211575.5794 217308.1933 343119.4642 216902.3726 1.295164948 1.580593233 2.91595845 0.985079821 1.552517332 1.172707363 0.975441517 1.001870983 1.581907381 1 17.72668631 GAAAS(ph)PPRELTEPAAR ddPTM_HeLa_A486_30min_R1 2 GAAASPPRELTEPAAR 16 1 F8WC22;F8WD19;C9J4K5;C9JSP0;H7C1C1;F8W8A5;Q9NYP3-2;Q9NYP3-3;Q9NYP3 F8WC22 DONSON Protein downstream neighbor of Son 1 0 GAAAS(1)PPRELTEPAAR;GAAAS(1)PPRELTEPAAR ; 120.71 2.71E-05 847200000 241655 268360 294714 106734 419020 251907 323604 356100 241919 296214 TRUE FALSE FALSE 224716.2324 247094.1762 408835.1535 248482.146 366462.6044 220829.2755 242634.8565 275023.8036 262888.7337 222040.0864 1.012052536 1.112835886 1.841267314 1.119086873 1.650434435 0.994546882 1.092752486 1.238622305 1.183969697 1 17.76046063 -6.297136428 24.99942103 1.116315565 1.348901409 0.198152142 0.245724126 1100.838163 770937.455 0.086750673 0.07650955 5.05E-07 6.297136428 0.232585844 GAAEEAELEDS(ph)DDEEKPVKQDDFPK ddPTM_HeLa_A485_30min_R1 4 GAAEEAELEDSDDEEKPVKQDDFPK 25 2 Q9UBB9;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK ;;; 293.43 8.72E-90 3168880000 1951064 859251 570983 5356480 1415950 1362768 3102150 2172670 1053829 6571310 TRUE FALSE FALSE 2385071.456 959732.93 782213.3723 5649090.939 1274973.046 1434120.425 2439350.31 1639819.276 1265322.814 4933203.353 0.483473168 0.194545585 0.158560942 1.145116172 0.258447292 0.290707746 0.494475929 0.332404557 0.256491112 1 22.23409333 -10.26618385 3.396903385 1.001911929 0.403438992 0.306622152 0.269953783 132329458.5 196729150.4 2623240.705 0.066598738 5.42E-11 10.26618385 -0.598472937 GAAEEAELEDS(ph)DDEEKPVKQDDFPK ddPTM_HeLa_A486_30min_R1 4 GAAEEAELEDSDDEEKPVKQDDFPK 25 2 Q9UBB9;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK ;;; 351.33 2.81E-142 3305750000 4105010 3224130 915244 4260790 2105260 5469610 7876390 6526150 2408330 11420240 TRUE FALSE FALSE 3817269.997 2968638.197 1269650.988 9919334.448 1841198.66 4794825.129 5905633.914 5040288.11 2617085.983 8560537.571 0.445914753 0.34678175 0.148314399 1.158727985 0.215079794 0.560107948 0.68986718 0.588781729 0.305715145 1 23.02926996 -14 0.243118688 3.814238443 0.456399042 0.224691075 0.275558328 272.3751758 2.71514738 380.9040778 0.418801466 1.00E-14 14 -3.3578394 GAAEEEQQDS(ph)GSEPRGDEDDIPLGPQSNVSLLDQHQHLK ddPTM_HeLa_A485_30min_R1 1 GAAEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLK 39 1 D6RGI7;A0A499FJW5;Q9UJV9 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 GAAEEEQQDS(0.96)GS(0.04)EPRGDEDDIPLGPQSNVSLLDQHQHLK 108.91 1.49E-05 132740000 20392 20525 20666 16650 24450 19720 26616 34738 19644 29518 TRUE FALSE FALSE 24928.13005 22925.22021 28311.21338 17559.54734 22015.67215 20752.50871 20929.27417 26218.45103 23586.37061 22159.70584 1.124930549 1.034545331 1.277598791 0.792408864 0.993500199 0.936497481 0.944474368 1.183158803 1.064381034 1 14.43565111 -5.246967691 24.9899518 0.991703868 1.134576907 0.306227976 0.108425342 1156.274169 1996670.782 0.030601555 0.052698006 5.66E-06 5.246967691 0.142873039 GAAGRPLELS(ph)DFR ddPTM_HeLa_A485_30min_R1 1 GAAGRPLELSDFR 13 1 G5E972;P42167;H0YJH7;P42167-2 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 GAAGRPLELS(1)DFR 44.567 0.034328 60750000 95425 116730 98144 91963 124270 98755 102490 119530 107640 189820 TRUE FALSE FALSE 116651.962 130380.5581 134451.5497 96986.70583 111897.2425 103925.6591 80592.17423 90215.08008 129242.3607 142501.3674 0.818602405 0.914942505 0.943510594 0.680601931 0.785236272 0.729295873 0.565553691 0.633082206 0.906955232 1 17.12061624 -5.260471949 24.99415311 0.733972651 0.894610905 0.183798761 0.123821433 119.4337128 3085604.189 0.033690844 0.054329799 5.49E-06 5.260471949 0.160638253 GAAIPAK(ac)GAK ddPTM_HeLa_A485_30min_R1 2 GAAIPAKGAK 10 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; GAAIPAK(1)GAK;GAAIPAK(1)GAK 167.24 2.48E-05 96375000 109374 138745 130682 122558 183321 223266 299470 405170 310200 437490 FALSE TRUE FALSE 133703.869 154970.0208 179026.7099 129253.0332 165068.9176 234955.8625 235485.7881 305801.4222 372454.2947 328431.7944 0.407097824 0.471848413 0.545095551 0.393546043 0.502597253 0.71538708 0.717000583 0.931095672 1.134038485 1 18.32523427 -6.930924934 1.002326558 1.07385156 0.455796941 0.924373913 0.068680025 0.138376292 0.262698644 0.055255752 0.02738745 1.17E-07 6.930924934 -0.618054618 down GAAIPAK(ac)GAK ddPTM_HeLa_A486_30min_R1 2 GAAIPAKGAK 10 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; GAAIPAK(1)GAK;GAAIPAK(1)GAK 152.63 0.0008733 154550000 393400 423150 311180 133501 478680 436840 462310 482980 374530 540000 FALSE TRUE FALSE 365824.6915 389618.0529 431677.2297 310797.0748 418639.4909 382947.1223 346635.1482 373015.9974 406994.562 404780.4852 0.903760692 0.962541593 1.06644773 0.76781635 1.034238325 0.946061226 0.856353408 0.921526632 1.005469821 1 18.62678021 -7.766225931 24.8311739 1.002734962 0.933656548 0.11117418 0.079544339 267.5494884 1387877.504 0.06680702 0.019459258 1.71E-08 7.766225931 -0.069078413 GAANASGS(ph)SPDAPAK ddPTM_HeLa_A486_30min_R1 1 GAANASGSSPDAPAK 15 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANAS(0.002)GS(0.679)S(0.319)PDAPAK 159.4 2.96E-09 195130000 382850 479300 357650 150190 424550 486980 504240 481770 438560 423940 TRUE FALSE FALSE 356014.192 441318.5224 496141.6582 349649.9102 371298.9802 426901.3588 378073.8187 372081.488 476574.7339 317782.6646 1.120307152 1.388743225 1.561260929 1.10028 1.168405396 1.343375226 1.18972449 1.170867796 1.499687639 1 18.2776809 -10.51644285 2.923090259 0.989195084 1.280900371 0.235211173 0.15280456 27027256.93 28843807.45 2319309.633 0.037789306 3.04E-11 10.51644285 0.291705287 GAANASGSS(ph)PDAPAK ddPTM_HeLa_A485_30min_R1 1 GAANASGSSPDAPAK 15 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANASGS(0.28)S(0.72)PDAPAK 179.71 1.05E-17 266550000 571760 509710 524910 641800 685350 488930 595660 491490 592350 825400 TRUE FALSE FALSE 698946.0395 569316.1506 719096.0523 676859.9089 617114.1476 514529.6188 468392.3749 370951.3069 711229.2116 619642.9704 1.127981875 0.91878094 1.160500622 1.092338558 0.995918903 0.830364651 0.755906865 0.598653297 1.147804858 1 19.24107767 -6.130010026 3.304960846 0.834145077 1.068259492 0.291660116 0.149313366 0.291724907 5.95147191 0.050811839 0.051189681 7.41E-07 6.130010026 0.234114416 GAANASGSS(ph)PDAPAK ddPTM_HeLa_A486_30min_R1 1 GAANASGSSPDAPAK 15 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANASGS(0.246)S(0.754)PDAPAK 213.98 2.67E-26 228830000 364110 458960 274230 141610 424680 500300 487280 447360 391820 393280 TRUE FALSE FALSE 338587.7693 422590.3381 380419.2001 329675.2366 371412.6744 438578.0727 365357.3901 345505.8938 425783.2731 294800.1282 1.148533318 1.433480849 1.290430918 1.118300859 1.259879623 1.487713304 1.239339319 1.172000487 1.444311696 1 18.16937763 -10.12027593 4.672009297 0.999977668 1.28773872 0.332104547 0.122619024 2.82E-05 5.31E-06 0.117378338 0.028466221 7.58E-11 10.12027593 0.287761052 GAANASGSS(ph)PDAPAKDAR ddPTM_HeLa_A485_30min_R1 4 GAANASGSSPDAPAKDAR 18 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANAS(0.148)GS(0.148)S(0.704)PDAPAKDAR;GAANAS(0.017)GS(0.063)S(0.92)PDAPAKDAR;GAANAS(0.013)GS(0.039)S(0.949)PDAPAKDAR;GAANAS(0.021)GS(0.102)S(0.877)PDAPAKDAR ;;; 159.46 7.59E-10 2222070000 1440210 1584700 1452120 1433300 2166880 1803740 2249330 2222110 1532820 2165910 TRUE FALSE FALSE 1760579.746 1770016.88 1989319.616 1511597.55 1951137.819 1898181.037 1768742.27 1677134.038 1840442.914 1625988.498 1.082775031 1.088578968 1.223452453 0.929648366 1.199970247 1.16740127 1.087795069 1.031455045 1.131891718 1 20.63288562 -9.069571967 0.549674984 0.99106653 1.110472562 0.130097115 0.08064551 10.09264992 3.495646371 0.285971426 0.035936531 8.52E-10 9.069571967 0.119406032 GAANASGSS(ph)PDAPAKDAR ddPTM_HeLa_A486_30min_R1 2 GAANASGSSPDAPAKDAR 18 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANAS(0.065)GS(0.044)S(0.892)PDAPAKDAR;GAANAS(0.041)GS(0.177)S(0.783)PDAPAKDAR ; 111.66 4.73E-05 1216220000 697920 704100 538900 307760 843160 685790 874340 921640 529080 755870 TRUE FALSE FALSE 648999.4121 648304.5517 747576.5122 716480.8333 737403.0106 601184.2024 655570.8842 711802.6913 574941.0804 566595.2321 1.145437475 1.144211096 1.319418996 1.26453735 1.301463494 1.061047055 1.157035653 1.256280764 1.014729824 1 19.11195894 -6.263981904 24.99798123 1.117537269 1.236298482 0.36916483 0.087791887 305.1937615 3000637.733 0.031083958 0.02865677 5.45E-07 6.263981904 0.118761213 GAAQENGAPECS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GAAQENGAPECSPR 14 0 Q6IE81;Q6IE81-2;Q6IE81-3 Q6IE81 JADE1 Protein Jade-1 1 0 GAAQENGAPECS(1)PR 128.45 6.18E-05 0 151150 210240 198470 51455 211990 178470 180960 180670 180030 162250 TRUE FALSE FALSE 140555.1655 193579.8167 275322.8992 119789.8404 185400.2375 156452.186 135681.894 139535.385 195635.1454 121621.5439 1.155676544 1.591657288 2.263767506 0.984939317 1.524402926 1.286385462 1.115607397 1.147291676 1.608556667 1 16.89203928 -5.300963064 24.99997289 1.253134944 1.66249757 0.282763664 0.314730266 692.7602647 438191.2033 0.088295086 0.13096484 5.00E-06 5.300963064 0.409362625 GAAS(ph)PVLQEDHCDSLPSVLQVEEK ddPTM_HeLa_A485_30min_R1 1 GAASPVLQEDHCDSLPSVLQVEEK 24 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 GAAS(1)PVLQEDHCDSLPSVLQVEEK 115.66 0.0001166 112630000 55861 39682 48402 86044 72325 49976 68422 52425 59743 125140 TRUE FALSE FALSE 68287.08673 44322.46471 66307.91398 90744.36585 65124.06905 52592.66608 53803.08074 39567.68655 71732.8721 93944.90103 0.72688444 0.471792127 0.705817061 0.965931784 0.69321558 0.559824594 0.572708898 0.421179714 0.76356323 1 16.51952724 -8.011632209 24.4740806 1.000000021 0.64081548 0.369084456 0.144251949 495.4178802 1042357.389 0.149999291 0.03872965 9.74E-09 8.011632209 -0.359184541 GAAS(ph)PVLQEDHCDSLPSVLQVEEK ddPTM_HeLa_A486_30min_R1 3 GAASPVLQEDHCDSLPSVLQVEEK 24 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK ;; 243.24 3.96E-49 547540000 326043 477180 336968 136200 457080 490120 556220 541980 409164 467828 TRUE FALSE FALSE 303189.0694 439366.5189 467451.0339 317080.4832 399748.7643 429653.9776 417047.8729 418582.9853 444630.665 350680.8238 0.864572708 1.252895765 1.332981453 0.904185406 1.139921938 1.225199522 1.189252005 1.193629526 1.267906982 1 18.41979902 -6.005863569 24.85425694 1.187553739 1.105868184 0.063957682 0.146692552 797.5785418 3380764.428 0.046298217 0.050878622 9.87E-07 6.005863569 -0.081685554 GAASTLVPGVSETSAS(ph)PGSPSVR ddPTM_HeLa_A486_30min_R1 1 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 GAASTLVPGVSETSAS(0.809)PGS(0.19)PSVR 270.49 1.46E-62 293970000 207150 218510 210820 63501 258620 172620 207890 205070 195820 208830 TRUE FALSE FALSE 192629.8547 201194.4718 292455.15 147833.5372 226181.4681 151323.8995 155873.7232 158380.0376 212793.8353 156537.6087 1.230565972 1.285278812 1.868274035 0.944396291 1.444901771 0.966693568 0.995758939 1.01176988 1.359378343 1 17.25614979 -5.297507639 24.99984103 1.107825858 1.443764111 0.345673091 0.225326099 670.7497891 464912.6002 0.062935489 0.093351742 5.04E-06 5.297507639 0.335938253 GAASTLVPGVSETSASPGS(ph)PSVR ddPTM_HeLa_A485_30min_R1 2 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 GAASTLVPGVSETSAS(0.013)PGS(0.985)PS(0.002)VR;GAASTLVPGVSET(0.009)S(0.009)AS(0.018)PGS(0.959)PS(0.004)VR ; 227.06 2.70E-38 1016710000 595140 928780 913720 577150 944130 796500 893070 973340 818020 820320 TRUE FALSE FALSE 727526.8398 1037392.742 1251743.051 608678.2431 850129.1022 838203.5084 702258.2988 734626.8389 982189.1107 615829.3209 1.181377397 1.684545874 2.032613597 0.98838789 1.380462205 1.361097109 1.140345669 1.192906563 1.594904753 1 19.23217103 -5.27372544 24.97279693 1.252046851 1.638015677 0.331247272 0.257166027 860.8856154 1749845.043 0.071845036 0.107425601 5.32E-06 5.27372544 0.385968827 GAASTLVPGVSETSASPGS(ph)PSVR ddPTM_HeLa_A486_30min_R1 3 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 GAASTLVPGVSET(0.001)S(0.001)AS(0.216)PGS(0.777)PS(0.006)VR;GAASTLVPGVSETSAS(0.025)PGS(0.973)PS(0.002)VR;GAASTLVPGVSETSASPGS(0.996)PS(0.004)VR ;; 272.64 1.07E-74 873980000 779450 853670 797060 192190 970590 677970 812270 784130 695270 802740 TRUE FALSE FALSE 724814.5801 786022.0802 1105702.978 447428.0327 848849.5518 594328.9545 609031.4547 605600.7164 755536.5634 601728.679 1.204553822 1.306273255 1.83754409 0.743571062 1.410684884 0.987702556 1.012136326 1.006434856 1.255610028 1 19.19875359 -5.268824 24.99881857 1.069390755 1.43513868 0.3851899 0.225333814 601.8637331 2037461.974 0.061430898 0.093208767 5.38E-06 5.268824 0.365747926 GACS(ph)TPDMPQFEPVKTETMTVSSLAIR ddPTM_HeLa_A485_30min_R1 2 GACSTPDMPQFEPVKTETMTVSSLAIR 27 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 GACS(0.5)T(0.5)PDMPQFEPVKTETMTVSSLAIR;GACS(0.516)T(0.476)PDMPQFEPVKT(0.001)ET(0.001)MT(0.002)VS(0.002)S(0.002)LAIR ; 117.49 8.34E-05 189060000 144196 129249 140843 173389 158042 144530 181122 154635 165029 294010 TRUE FALSE FALSE 176271.9027 144363.5462 192946.6867 182860.802 142306.7836 152097.3673 142423.8051 116710.5238 198148.8066 220718.7179 0.798626888 0.654061185 0.874174554 0.828478907 0.644742707 0.689100448 0.645272891 0.528774926 0.897743556 1 17.75184946 -7.975833626 10.83466636 0.999995743 0.710915378 0.511257844 0.096819702 0.312106899 136.2788819 0.098699545 0.02549301 1.06E-08 7.975833626 -0.289080365 GACST(ph)PDMPQFEPVK ddPTM_HeLa_A485_30min_R1 1 GACSTPDMPQFEPVK 15 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 GACS(0.108)T(0.892)PDMPQFEPVK 83.617 0.012938 99196000 118390 72729 80105 165880 95244 111060 94299 90787 115470 241380 TRUE FALSE FALSE 144725.4471 81234.02389 109739.1729 174941.6044 85761.17294 116874.9299 74151.2483 68521.3459 138643.7698 181208.4083 0.798668497 0.448290588 0.605596473 0.965416594 0.473273695 0.644975203 0.409204236 0.378135576 0.765106714 1 17.46729037 -10.27714006 6.219940621 1.00001277 0.59973221 0.29380671 0.180848848 3.21E-05 3.73E-06 0.175651826 0.042600468 5.28E-11 10.27714006 -0.400280561 GADAGSSGGTGPTEGYS(ph)PPAASTR ddPTM_HeLa_A485_30min_R1 1 GADAGSSGGTGPTEGYSPPAASTR 24 0 J3KT76;J3KSI9;Q969W3;Q969W3-2 J3KT76 FAM104A Protein FAM104A 1 0 GADAGSSGGTGPTEGYS(1)PPAASTR 360.66 2.18E-151 0 50641 59745 60954 45385 78415 46979 64086 79350 56798 59933 TRUE FALSE FALSE 61905.91574 66731.65804 83503.42111 47864.26763 70607.72727 49438.7478 50393.50257 59889.28808 68196.83762 44992.80609 1.375906976 1.48316284 1.855928278 1.063820459 1.569311484 1.098814502 1.120034667 1.331085862 1.515727592 1 15.45740673 -5.273054282 24.99941653 1.258984599 1.56281573 0.336136559 0.210887758 887.8627108 1910995.687 0.058709341 0.08791557 5.33E-06 5.273054282 0.303831131 GADAGSSGGTGPTEGYS(ph)PPAASTR ddPTM_HeLa_A486_30min_R1 1 GADAGSSGGTGPTEGYSPPAASTR 24 0 J3KT76;J3KSI9;Q969W3;Q969W3-2 J3KT76 FAM104A Protein FAM104A 1 0 GADAGSSGGTGPTEGYS(0.998)PPAAS(0.001)T(0.001)R 346.44 1.55E-141 153180000 80117 95178 87827 22442 110170 77881 92736 96776 82069 86299 TRUE FALSE FALSE 74501.21202 87635.74865 121835.9665 52246.11016 96351.45131 68272.83406 69532.47194 74742.21741 89182.807 64689.16869 1.151679849 1.354720588 1.88340597 0.807648502 1.489452613 1.055398229 1.074870389 1.15540544 1.378635849 1 15.98123655 -5.271712449 24.99264299 1.152473345 1.452414003 0.266676382 0.246586791 974.1060195 2369834.33 0.067783482 0.101806344 5.35E-06 5.271712449 0.299940659 GADFLVTEVENGGSLGSK ddPTM_HeLa_A485_30min_R1 1 GADFLVTEVENGGSLGSK 18 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 271.08 1.15E-57 26888000 30972 30988 33038 39773 41028 35278 44653 37657 37290 53678 FALSE FALSE TRUE 37861.61455 34611.77704 45260.13103 41945.69828 36943.10826 37125.10153 35112.52177 28421.56171 44773.76096 40297.06247 0.939562644 0.858915636 1.123162043 1.040912059 0.916769263 0.921285554 0.871341969 0.705301081 1.111092427 1 15.29838705 -5.896435024 6.914463457 0.902296747 0.990418183 0.068109086 0.115473186 0.513370448 30.25477924 0.036170387 0.041129674 1.27E-06 5.896435024 0.088121436 GADFLVTEVENGGSLGSK ddPTM_HeLa_A486_30min_R1 1 GADFLVTEVENGGSLGSK 18 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 204.35 1.14E-23 55275000 101280 128620 88442 60810 172560 116520 133870 133000 105750 131220 FALSE FALSE TRUE 94180.79501 118427.6828 122689.111 141568.7532 150915.9157 102144.9471 100374.3101 102718.8034 114916.4951 98361.6579 0.957494994 1.204002508 1.247326586 1.43926766 1.534296178 1.038463048 1.020461755 1.044297194 1.168305797 1 16.58580843 GADNDGS(ph)GS(ph)ESGYTTPK ddPTM_HeLa_A485_30min_R1 3 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(1)GS(0.999)ES(0.001)GYTTPK;GADNDGS(0.998)GS(0.961)ES(0.041)GYTTPK;GADNDGS(0.998)GS(0.796)ES(0.205)GY(0.002)TTPK ;; 244.23 3.35E-42 1943230000 2246460 2161230 1862432 2821280 2924950 2455580 3416820 3611880 2286090 3645580 TRUE FALSE FALSE 2746177.277 2413967.048 2551423.099 2975399.383 2633731.708 2584150.372 2686788.494 2726060.767 2744887.294 2736803.998 1.0034249 0.882038703 0.932263728 1.087180297 0.962338447 0.944221937 0.98172485 0.996074534 1.002953553 1 21.38406069 GADNDGS(ph)GS(ph)ESGYTTPK ddPTM_HeLa_A486_30min_R1 4 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(1)GS(0.998)ES(0.002)GYTTPK;GADNDGS(1)GS(0.997)ES(0.003)GYTTPK;GADNDGS(1)GS(0.999)ES(0.001)GYTTPK;GADNDGS(0.998)GS(0.659)ES(0.333)GY(0.009)TTPK ;;; 251.21 5.05E-43 2650040000 3786490 4092450 2708980 1769880 4345430 4424080 5411480 5132410 3212790 4764010 TRUE FALSE FALSE 3521076.604 3768149.358 3757969.605 4120370.085 3800385.65 3878281.99 4057470.467 3963872.283 3491277.224 3571070.887 0.986000199 1.055187499 1.052336883 1.15381918 1.064214565 1.086027725 1.136205524 1.109995407 0.977655536 1 21.76792534 -4.253301411 1.710667176 1.082152445 0.952436135 0.182556356 0.052483362 1.447204323 4.11011073 0.014151787 0.310148244 5.58E-05 4.253301411 -0.12971631 GADNDGS(ph)GSESGYTT(ph)PK ddPTM_HeLa_A486_30min_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(1)GSESGYT(0.001)T(0.999)PK 215.62 1.46E-24 0 297370 279720 165450 180410 289400 325350 402840 405150 222930 499190 TRUE FALSE FALSE 276525.8986 257553.9685 229516.6709 420003.5974 253100.7535 285211.6249 302045.1712 312906.1894 242253.7519 374189.5748 0.738999473 0.688298087 0.61337003 1.122435326 0.676397127 0.762211574 0.807198253 0.836223696 0.647409143 1 18.51340984 -11.54609051 2.180863917 4.569031391 0.770110658 0.209123611 0.136384832 12346356.45 850361.4157 217649051.6 0.035631009 2.84E-12 11.54609051 -3.798920733 GADNDGS(ph)GSESGYTTPK ddPTM_HeLa_A485_30min_R1 8 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGS(1)GSESGYTTPK;GADNDGS(0.966)GS(0.034)ESGYTTPK;GADNDGS(0.965)GS(0.031)ES(0.004)GYTTPK;GADNDGS(0.894)GS(0.091)ES(0.015)GYTTPK;GADNDGS(0.977)GS(0.02)ES(0.003)GYTTPK;GADNDGS(0.982)GS(0.018)ESGYTTPK;GADNDGS(0.965)GS(0.035)ESGYTTPK;GADNDGS(0.981)GS(0.016)ES(0.003)GYTTPK ;;;;;;; 342.5 2.94E-92 7407900000 3512001 4118257 3383395 4753374 4898272 4282323 5573154 6355707 4224595 6299169 TRUE FALSE FALSE 4293233.506 4599851.332 4635053.605 5013038.785 4410582.841 4506538.811 4382404.119 4796959.893 5072432.466 4728902.096 0.907871091 0.972710206 0.980154275 1.060085128 0.932686436 0.95297782 0.926727606 1.014391881 1.072644847 1 22.17307384 -7.479624985 7.286736468 1.03882415 0.965545418 0.350479876 0.042340734 0.263155412 38.6025793 0.024679257 0.011439065 3.31E-08 7.479624985 -0.073278733 GADNDGS(ph)GSESGYTTPK ddPTM_HeLa_A486_30min_R1 6 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGS(0.712)GS(0.287)ES(0.002)GYTTPK;GADNDGS(0.786)GS(0.213)ES(0.001)GYTTPK;GADNDGS(0.998)GS(0.002)ESGYTTPK;GADNDGS(0.947)GS(0.053)ESGYTTPK;GADNDGS(0.999)GS(0.001)ESGYTTPK;GADNDGS(0.998)GS(0.002)ESGYTTPK ;;;;; 314.39 3.87E-79 8619670000 4428940 4810400 3093000 1682470 4906610 4796590 5557450 5700580 3747410 5745530 TRUE FALSE FALSE 4118494.177 4429206.385 4290692.433 3916875.187 4291177.221 4204835.494 4166917.229 4402682.377 4072238.516 4306811.891 0.956274451 1.028418816 0.996257218 0.909460475 0.996369781 0.976322069 0.967517815 1.022260198 0.945534335 1 22.03818888 GADNDGSGSESGYTT(ph)PK ddPTM_HeLa_A485_30min_R1 2 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGSGSESGYT(0.001)T(0.999)PK;GADNDGSGSESGYT(0.099)T(0.901)PK ; 163.56 9.15E-10 0 256460 253950 223990 391220 346270 285250 394280 390630 252980 485760 TRUE FALSE FALSE 313508.6422 283647.2434 306853.222 412591.358 311794.143 300185.2489 310038.857 294827.38 303750.7655 364668.9718 0.859707479 0.777821162 0.841456899 1.131413391 0.855005956 0.823171896 0.850192588 0.808479478 0.832949302 1 18.47622793 -5.964298981 24.99996986 0.848956536 0.902305739 0.030397241 0.099437944 594.7616941 416484.7518 0.032270879 0.036591655 1.09E-06 5.964298981 0.053349202 GADNDGSGSESGYTT(ph)PK ddPTM_HeLa_A486_30min_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGSGSESGYT(0.034)T(0.966)PK 141.13 2.11E-06 398460000 229420 241580 151910 133600 241700 272040 322270 303050 187530 395450 TRUE FALSE FALSE 213338.8427 222436.321 210733.6203 311027.5518 211383.7322 238478.4707 241634.6374 234052.1305 203785.2514 296426.7461 0.719701733 0.75039221 0.710912976 1.049256033 0.713106139 0.804510638 0.815158013 0.789578315 0.687472551 1 18.1773161 -11.40541423 2.349751875 2.911527047 0.786858242 0.304824969 0.098436187 5136103.751 722474.3978 52520005.47 0.024546078 3.93E-12 11.40541423 -2.124668805 GADS(ph)GEEKEEGINR ddPTM_HeLa_A485_30min_R1 2 GADSGEEKEEGINR 14 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR ; 231.83 8.10E-29 5094500000 2459700 1768820 1605930 4055800 2221300 1873760 2870600 1677690 1977480 5226800 TRUE FALSE FALSE 3006851.779 1975668.112 2200030.335 4277358.084 2000139.573 1971867.176 2257272.859 1266233.897 2374342.097 3923854.952 0.766300441 0.503501821 0.560680851 1.090090775 0.509738407 0.502533147 0.57526919 0.322701505 0.605104451 1 21.90384028 -9.729843379 4.859830721 0.999999812 0.599184631 0.273720116 0.193376918 130509155 374199856.6 687.4868664 0.049968359 1.86E-10 9.729843379 -0.400815181 GADS(ph)GEEKEEGINR ddPTM_HeLa_A486_30min_R1 3 GADSGEEKEEGINR 14 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR ;; 188.27 6.59E-18 6688000000 4049330 4777010 2484250 2140061 3477570 5211600 6328960 5189170 3764470 6925040 TRUE FALSE FALSE 3765492.878 4398462.33 3446218.131 4982170.161 3041380.744 4568645.78 4745387.267 4007709.27 4090777.291 5190964.91 0.72539363 0.847330392 0.663887772 0.959777276 0.585898922 0.880114942 0.914162848 0.77205478 0.788057204 1 22.3075713 GADS(ph)GEEKEEGINREDK ddPTM_HeLa_A485_30min_R1 4 GADSGEEKEEGINREDK 17 2 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK ;;; 208.63 1.01E-25 3444350000 1346110 962820 733881 2320370 1312920 1156490 1855260 1406950 1004310 3058570 TRUE FALSE FALSE 1645547.525 1075413.424 1005374.121 2447125.938 1182201.075 1217042.028 1458868.545 1061893.306 1205865.805 2296124.788 0.716662933 0.468360182 0.437856917 1.065763477 0.514867955 0.530041762 0.635361176 0.462471949 0.525174333 1 21.13076962 -10.90506194 2.425619236 1.239083673 0.593658981 0.321047874 0.176601569 38154137.17 19571899.56 51975292.94 0.044917366 1.24E-11 10.90506194 -0.645424691 GADS(ph)GEEKEEGINREDK ddPTM_HeLa_A486_30min_R1 3 GADSGEEKEEGINREDK 17 2 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK ;; 155.91 9.05E-09 3628800000 1424900 1399240 542700 1213920 1201750 1953920 2472690 2209030 1154450 2969470 TRUE FALSE FALSE 1325021.868 1288359.126 752847.974 2826067.108 1051015.309 1712865.216 1853996.809 1706082.092 1254518.656 2225895.384 0.595275896 0.578804887 0.338222533 1.269631596 0.472176418 0.769517395 0.832921808 0.766470026 0.563601805 1 21.08595436 -10.14343079 0.048857095 1.804196001 3.63E-20 0.141749493 0.238894272 475.4400386 4.253883799 104.2762597 56.9416288 7.19E-11 10.14343079 -1.804196001 GADS(ph)GEEKEEGINREDKTDK ddPTM_HeLa_A485_30min_R1 3 GADSGEEKEEGINREDKTDK 20 3 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK ;; 189.2 1.91E-18 2787370000 1288505 567310 386917 3451910 1126149 1056409 2260740 1264979 739995 4532150 TRUE FALSE FALSE 1575128.492 633651.9696 530053.6993 3640479.103 1014025.651 1111720.942 1777714.43 954740.9168 888505.2089 3402368.413 0.462950598 0.186238494 0.155789625 1.069983806 0.29803523 0.326749137 0.522493221 0.280610681 0.261143151 1 21.69810794 -10.08155115 4.604376354 1.000032631 0.39799653 0.345335686 0.249472993 130770151.2 71582235.51 43893.00468 0.060925407 8.29E-11 10.08155115 -0.602036101 GADS(ph)GEEKEEGINREDKTDK ddPTM_HeLa_A486_30min_R1 5 GADSGEEKEEGINREDKTDK 20 3 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK;GADS(1)GEEKEEGINREDKTDK ;;;; 201.17 1.67E-25 4830320000 2025630 1738750 566139 2444828 1299330 3140280 4655500 3858920 1429635 6208620 TRUE FALSE FALSE 1883643.797 1600965.118 785363.1825 5691683.139 1136355.916 2752864.182 3490644.659 2980328.156 1553556.913 4653941.141 0.404741646 0.344002012 0.168752281 1.222981333 0.244170668 0.591512462 0.750040569 0.640388021 0.333815333 1 22.15002153 -14 0.067558121 2.376112721 6.85E-12 0.192757427 0.291198834 584.6090933 2.848264043 132.1345611 17.63492234 1.00E-14 14 -2.376112721 GADTAPTLAPEALPS(ph)QGEVER ddPTM_HeLa_A485_30min_R1 1 GADTAPTLAPEALPSQGEVER 21 0 C9JFV4;Q8IZL8 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GADTAPTLAPEALPS(1)QGEVER 99.092 0.00049622 54636000 43767 71427 47546 32203 39436 53061 48955 55521 43081 54210 TRUE FALSE FALSE 53502.81816 79779.76632 65135.24395 33962.16835 35509.61337 55839.19191 38495.36432 41904.3877 51726.96154 40696.44466 1.3146804 1.960362066 1.600514357 0.83452421 0.872548294 1.372090176 0.945914677 1.029681783 1.271043748 1 15.31261514 -5.189188281 6.696766188 1.05051068 1.665982544 0.604835433 0.213794631 0.158763962 12.30428685 0.057023471 0.09947532 6.47E-06 5.189188281 0.615471864 GADTAPTLAPEALPS(ph)QGEVER ddPTM_HeLa_A486_30min_R1 1 GADTAPTLAPEALPSQGEVER 21 0 C9JFV4;Q8IZL8 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GADTAPTLAPEALPS(1)QGEVER 102.98 0.00022431 50157000 44370 53474 43683 8961.7 44227 40037 42344 42986 37254 50459 TRUE FALSE FALSE 41259.89213 49236.52549 60598.22747 20863.2905 38679.63726 35097.64201 31749.08333 33199.02618 40483.20672 37823.73797 1.090846499 1.301736109 1.602121597 0.551592508 1.022628628 0.927926321 0.839395709 0.877729911 1.070312161 1 15.20700433 -5.2555624 24.98778252 0.897351512 1.328584856 0.557598074 0.17675897 352.6588248 1499432.756 0.047470569 0.07952516 5.55E-06 5.2555624 0.431233344 GAEETSWS(ph)GEER ddPTM_HeLa_A485_30min_R1 4 GAEETSWSGEER 12 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GAEETSWS(1)GEER;GAEETSWS(1)GEER;GAEETSWS(1)GEER;GAEETSWS(1)GEER ;;; 218.56 6.44E-23 4607150000 1820410 2489400 2471310 2299700 2672620 2430380 2885900 3000810 2230260 3266500 TRUE FALSE FALSE 2225353.924 2780513.675 3385550.409 2425326.788 2406524.569 2557630.939 2269303.889 2264856.642 2677852.725 2452221.665 0.907484815 1.13387534 1.380605374 0.989032444 0.981365022 1.042985214 0.925407324 0.923593766 1.092010874 1 21.22565796 GAEETSWS(ph)GEER ddPTM_HeLa_A486_30min_R1 4 GAEETSWSGEER 12 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GAEETSWS(1)GEER;GAEETSWS(1)GEER;GAEETSWS(1)GEER;GAEETSWS(1)GEER ;;; 249.75 1.99E-28 4864550000 2514120 2961010 3015030 941145 3619490 2425640 2837700 2986330 2674130 2695360 TRUE FALSE FALSE 2337893.171 2726368.784 4182530.361 2191033.123 3165499.814 2126389.199 2127677.446 2306407.85 2905925.742 2020424.312 1.157129795 1.349404067 2.070124744 1.08444207 1.566750011 1.052446848 1.05308446 1.141546276 1.438274982 1 20.94622688 -6.264062842 24.98138375 1.140668024 1.454862387 0.240004108 0.274199933 355.5687276 3385819.39 0.094773815 0.087371359 5.44E-07 6.264062842 0.314194363 GAES(ph)ENEEESPR ddPTM_HeLa_A485_30min_R1 1 GAESENEEESPR 12 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 GAES(1)ENEEESPR 209.53 1.92E-17 418860000 321190 332680 319960 314430 290800 263400 273850 182370 321850 444410 TRUE FALSE FALSE 392637.6074 371584.0321 438326.5186 331606.5147 261846.9309 277191.2167 215339.7104 137643.4716 386442.3428 333626.7658 1.176876821 1.113771646 1.313823001 0.993944577 0.784849892 0.830842262 0.645450942 0.412567233 1.158307374 1 18.34787551 -5.583707617 2.990767619 0.767509424 1.192285837 0.44862825 0.193782359 0.216560952 3.931609993 0.058923997 0.081763048 2.61E-06 5.583707617 0.424776413 GAES(ph)ENEEESPR ddPTM_HeLa_A486_30min_R1 2 GAESENEEESPR 12 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 GAES(1)ENEEESPR;GAES(1)ENEEESPR ; 267.93 5.89E-34 1180690000 515080 559040 423300 135178 445280 476410 449100 402870 511810 510600 TRUE FALSE FALSE 478975.5519 514739.6344 587213.0964 314701.2155 389428.8303 417635.378 336730.4299 311145.2956 556174.1029 382742.4366 1.251430482 1.344872126 1.534225213 0.822227131 1.017469695 1.091165594 0.879783368 0.812936497 1.453128918 1 18.54601434 -5.259711172 24.99998033 1.001312031 1.373645562 0.45468186 0.183398813 136.3515006 1972425.708 0.049584409 0.080527285 5.50E-06 5.259711172 0.37233353 GAES(ph)PEKKPACR ddPTM_HeLa_A485_30min_R1 3 GAESPEKKPACR 12 2 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 1 0 GAES(1)PEKKPACR;GAES(1)PEKKPACR;GAES(1)PEKKPACR ;; 127.18 1.67E-05 907650000 1001950 713150 463350 1622500 1177950 1084570 1662340 1815200 779640 2387280 TRUE FALSE FALSE 1224830.321 796546.6889 634762.4466 1711133.067 1060669.162 1141356.408 1307167.479 1370019.354 936106.5967 1792175.031 0.68343231 0.444458089 0.354185521 0.954780106 0.591833467 0.636855435 0.729374897 0.764445063 0.522329896 1 20.77328011 -14 0.126075525 2.162810153 0.476365313 0.320546592 0.161151227 180.5360032 1.449579006 53.70490233 1.364028845 1.00E-14 14 -1.68644484 GAES(ph)PEKKPACR ddPTM_HeLa_A486_30min_R1 4 GAESPEKKPACR 12 2 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 1 0 GAES(1)PEKKPACR;GAES(1)PEKKPACR;GAES(1)PEKKPACR;GAES(1)PEKKPACR ;;; 115.1 0.000125 1046760000 918710 949090 465159 777766 887670 1388630 1748700 1483010 829509 1932400 TRUE FALSE FALSE 854313.1732 873880.6519 645281.0222 1810678.554 776330.1514 1217314.949 1311156.764 1145360.997 901411.508 1448514.462 0.589785739 0.603294392 0.445477791 1.250024492 0.535949189 0.840388537 0.905173402 0.790714229 0.622300661 1 20.46614266 GAES(ph)PFEEK ddPTM_HeLa_A485_30min_R1 6 GAESPFEEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK ;;;;; 205.52 6.01E-10 47770210000 13558200 14404500 11820400 19505500 17369000 15651400 22239100 22043600 13019200 24262100 TRUE FALSE FALSE 16574174.81 16088980.97 16193257.85 20571036.07 15639681.37 16470883.1 17487534.61 16637372.54 15632034.02 18214004.98 0.909968721 0.883330217 0.88905531 1.129407623 0.858662408 0.904297716 0.960114737 0.913438453 0.858242547 1 24.11854485 -5.337251945 0.004099261 1.850468194 5.02E-08 0.023995071 0.077156553 194535.393 185.6736562 41083.33842 42737.54936 4.60E-06 5.337251945 -1.850468144 GAES(ph)PFEEK ddPTM_HeLa_A486_30min_R1 8 GAESPFEEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK ;;;;;;; 196.11 2.89E-09 50847220000 17201710 20511390 13682610 10743900 21392760 22636100 29640100 27657600 16807170 28468200 TRUE FALSE FALSE 15995958.96 18885992.76 18980883.03 25012342.17 18709480.56 19843488.13 22223833.48 21360568.24 18264029.03 21339577.42 0.749591177 0.885021872 0.889468552 1.172110472 0.876750284 0.929891335 1.041437374 1.000983657 0.855875853 1 24.34702827 -4.481728185 1.782436615 0.978059957 0.73155099 0.390828711 0.087085399 0.586797975 2.636342507 0.024103095 0.211485429 3.30E-05 4.481728185 -0.246508966 GAEVHLVPWNHDFTK ddPTM_HeLa_A485_30min_R1 2 GAEVHLVPWNHDFTK 15 0 P31327;P31327-3;Q5R211 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 179.14 2.85E-11 34283000 74726 78644 58845 90017 76582 96227 103548 109121 69242 137209 FALSE FALSE TRUE 91348.5409 87840.73169 80614.21424 94934.40077 68957.22718 101265.2969 81424.12389 82358.90365 83138.23427 103005.3214 0.88683322 0.852778579 0.78262184 0.921645595 0.669453056 0.983107431 0.790484635 0.799559697 0.807125623 1 16.65235935 -10.30862953 6.49834145 1.000005409 0.83177882 0.274668742 0.081587675 5.93E-06 6.31E-07 0.073269697 0.01776994 4.91E-11 10.30862953 -0.168226589 GAEVHLVPWNHDFTK ddPTM_HeLa_A486_30min_R1 2 GAEVHLVPWNHDFTK 15 0 P31327;P31327-3;Q5R211 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 160.81 3.73E-08 25916000 43086 48682 36694 18660.2 57000 46857 49597 51322 48250 61633 FALSE FALSE TRUE 40065.8939 44824.26102 50902.8995 43441.88863 49850.5285 41076.25975 37187.30602 39637.10095 52432.34885 46199.69564 0.867232854 0.970228492 1.10180162 0.940306814 1.079022877 0.889102389 0.804925346 0.85795156 1.134906802 1 15.49559573 -6.294189206 24.95610649 0.92022095 0.993784206 0.051280782 0.10438246 1591.130421 1212472.64 0.037308816 0.032905149 5.08E-07 6.294189206 0.073563256 GAFGKPQGTVAR ddPTM_HeLa_A485_30min_R1 1 GAFGKPQGTVAR 12 1 X1WI28;P27635;F8W7C6;A0A087WV22;Q96L21;H7C123;H7C2C5 X1WI28 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 0 74.611 0.012183 232400000 112560 194680 214270 119650 207200 176540 175820 237800 190040 162560 FALSE FALSE TRUE 137598.5837 217446.1325 293537.3895 126186.1765 186570.4405 185783.3614 138254.6207 179479.1771 228179.2848 122036.7837 1.12751729 1.781808123 2.405318959 1.034001165 1.528804962 1.522355439 1.132893022 1.470697373 1.869758264 1 16.89695654 -5.29328329 24.9990048 1.388761788 1.772574898 0.192710863 0.378753243 1118.872223 878366.3151 0.106883871 0.158550716 5.09E-06 5.29328329 0.383813111 GAFMLEPEGMSPMEPAGVS(ph)PMPGTQK ddPTM_HeLa_A485_30min_R1 3 GAFMLEPEGMSPMEPAGVSPMPGTQK 26 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3;Q6IBW4-5 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 GAFMLEPEGMSPMEPAGVS(0.905)PMPGT(0.095)QK;GAFMLEPEGMSPMEPAGVS(1)PMPGTQK;GAFMLEPEGMSPMEPAGVS(0.96)PMPGT(0.04)QK ;; 209.83 8.38E-29 209352000 146657 169674 149495 159347 214407 201457 258686 282915 164461 220588 TRUE FALSE FALSE 179280.3437 189515.8983 204799.4215 168051.7231 193059.8863 212004.977 203415.6228 213529.6527 197466.8142 165599.4712 1.082614228 1.14442333 1.236715431 1.014808332 1.165824292 1.280227379 1.228359133 1.289434387 1.19243626 1 17.33733854 -6.004410228 24.94429401 1.218623155 1.124840963 0.119894055 0.091747251 310.1662115 1754315.602 0.027533417 0.030462003 9.90E-07 6.004410228 -0.093782192 GAFMLEPEGMSPMEPAGVS(ph)PMPGTQK ddPTM_HeLa_A486_30min_R1 2 GAFMLEPEGMSPMEPAGVSPMPGTQK 26 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3;Q6IBW4-5 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 GAFMLEPEGMSPMEPAGVS(0.855)PMPGT(0.145)QK;GAFMLEPEGMSPMEPAGVS(0.93)PMPGT(0.07)QK ; 99.387 0.0013025 104708000 63642.3 58001.6 46203 25252.4 74025.4 64916.3 74327.1 74954 55781.8 86556.9 TRUE FALSE FALSE 59181.30342 53405.34198 64094.03896 58788.86339 64740.44407 56907.58693 55729.67343 57888.61043 60617.01134 64882.48885 0.912130599 0.823108714 0.987848033 0.906082125 0.997810738 0.877086991 0.858932424 0.892206995 0.934258417 1 15.98554154 -4.74976759 24.99999632 0.924814164 0.867619689 0.186483186 0.051998787 404.903458 867253.907 0.013255128 0.034451147 1.78E-05 4.74976759 -0.057194475 GAGAT(ph)SGSPPAGRN ddPTM_HeLa_A485_30min_R1 1 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.414)S(0.327)GS(0.259)PPAGRN 64.121 0.026004 169780000 61874 106550 105060 59908 104530 97824 99690 124720 85545 83295 TRUE FALSE FALSE 75637.65784 119010.0956 143926.0659 63180.62234 94122.62617 102945.9134 78390.41711 94132.22445 102713.0968 62531.08943 1.209600833 1.903214812 2.301672132 1.01038736 1.505213279 1.646315686 1.253623083 1.505366775 1.642592473 1 15.93228603 -12.00938547 0.152777563 2.09E-13 1.761284226 0.182804478 0.347978414 114.2158988 1.821903822 40.01426552 1.928476616 9.79E-13 12.00938547 1.761284226 GAGAT(ph)SGSPPAGRN ddPTM_HeLa_A486_30min_R1 2 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.534)S(0.28)GS(0.187)PPAGRN;GAGAT(0.514)S(0.243)GS(0.243)PPAGRN ; 72.29 0.012098 845910000 155519 169468 158414 53396 197494 154458 162153 166013 149935 169156 TRUE FALSE FALSE 144617.9212 156038.7385 219756.1433 124308.5865 172722.461 135402.5424 121580.6043 128215.4639 162931.4865 126798.2366 1.140535745 1.230606534 1.733116715 0.980365262 1.362183463 1.067858245 0.958850908 1.011177027 1.284966502 1 16.95217516 -6.275265039 21.61801006 1.058661475 1.293583962 0.244115051 0.197572127 193.9003917 303182.4708 0.069126703 0.06142951 5.31E-07 6.275265039 0.234922487 GAGATS(ph)GSPPAGRN ddPTM_HeLa_A485_30min_R1 4 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.001)S(0.623)GS(0.377)PPAGRN;GAGAT(0.012)S(0.494)GS(0.494)PPAGRN;GAGAT(0.115)S(0.442)GS(0.442)PPAGRN;GAGAT(0.004)S(0.875)GS(0.121)PPAGRN ;;; 238.93 8.14E-35 3594262000 1297880 2128770 2265420 1248320 2116970 2091660 2213310 2599350 1787020 1745359 TRUE FALSE FALSE 1586588.928 2377711.134 3103493.13 1316512.561 1906197.034 2201176.083 1740418.237 1961855.337 2145658.522 1310273.122 1.210884129 1.814668326 2.368584898 1.004761937 1.454808926 1.679936836 1.328286605 1.497287324 1.637565853 1 20.32143614 -11.99333481 0.194675979 3.50E-15 1.682673941 0.17819608 0.352866579 101.2381495 2.012866897 43.43158934 1.005038002 1.02E-12 11.99333481 1.682673941 GAGATSGS(ph)PPAGR ddPTM_HeLa_A485_30min_R1 6 GAGATSGSPPAGR 13 0 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.002)S(0.038)GS(0.96)PPAGR;GAGATS(0.018)GS(0.982)PPAGR;GAGAT(0.016)S(0.058)GS(0.926)PPAGR;GAGAT(0.012)S(0.049)GS(0.939)PPAGR;GAGAT(0.005)S(0.049)GS(0.946)PPAGR;GAGAT(0.039)S(0.332)GS(0.629)PPAGR ;;;;; 167.03 6.23E-12 1723323000 1081740 1245598 1552722 1440411 1500463 1071655 1235845 991449 1392145 1803502 TRUE FALSE FALSE 1322369.331 1391259.851 2127138.482 1519097.006 1351071.635 1127765.199 971796.6198 748294.5782 1671535.732 1353922.142 0.976695254 1.027577441 1.571093651 1.121997313 0.99789463 0.832961633 0.717764035 0.552686565 1.23458778 1 20.36871335 -5.940989802 2.55940886 0.832326038 1.194384545 0.288016173 0.224027545 0.332279899 4.417567877 0.078256 0.08851108 1.15E-06 5.940989802 0.362058507 GAGATSGS(ph)PPAGR ddPTM_HeLa_A486_30min_R1 4 GAGATSGSPPAGR 13 0 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.001)S(0.006)GS(0.993)PPAGR;GAGAT(0.04)S(0.134)GS(0.825)PPAGR;GAGAT(0.003)S(0.067)GS(0.93)PPAGR;GAGAT(0.012)S(0.282)GS(0.707)PPAGR ;;; 133 1.60E-05 1105827000 422928 528206 491119 129335 523741 497929 459622 438576 509765 461656 TRUE FALSE FALSE 393282.9312 486349.0329 681293.4294 301098.4162 458048.5201 436499.5826 344619.7142 338721.8188 553951.8406 346054.3327 1.136477408 1.40541235 1.968747 0.870090005 1.323631802 1.261361414 0.995854355 0.978811091 1.600765511 1 18.40063904 -5.283678455 24.99617886 1.15213341 1.49373244 0.25917671 0.27583341 1100.0589 1236436.97 0.077161067 0.114544887 5.20E-06 5.283678455 0.341599031 GAGATSGS(ph)PPAGRN ddPTM_HeLa_A485_30min_R1 1 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.009)S(0.346)GS(0.645)PPAGRN 206.45 1.36E-21 517090000 842620 1378800 1406100 822460 1526800 1387500 1445500 1729800 1137200 1124900 TRUE FALSE FALSE 1030057.912 1540038.666 1926274.903 867388.9072 1374786.431 1460147.355 1136657.116 1305563.838 1365425.609 844483.1323 1.21974954 1.82364645 2.281010513 1.027124017 1.627961979 1.729042652 1.345979657 1.545991611 1.616877303 1 19.68770908 -11.76492314 0.252321747 2.62E-10 1.65867325 0.218054122 0.327359729 79.80737206 2.162469163 43.79927723 0.49333876 1.72E-12 11.76492314 1.65867325 GAGATSGS(ph)PPAGRN ddPTM_HeLa_A486_30min_R1 2 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.012)S(0.488)GS(0.5)PPAGRN;GAGATS(0.341)GS(0.659)PPAGRN ; 212.69 4.17E-22 4007400000 2640400 2780100 2562500 831790 3311900 2408800 2624200 2852800 2204200 2776700 TRUE FALSE FALSE 2455321.595 2559794.751 3554768.626 1936449.156 2896490.62 2111626.747 1967597.404 2203279.716 2395261.831 2081396.247 1.179651207 1.229844992 1.707876927 0.930360646 1.391609418 1.014524145 0.945325719 1.058558513 1.15079569 1 20.98912021 -6.112111295 1.505365951 1.031369072 1.310719621 0.271480918 0.193702576 0.532566068 2.435020631 0.08079133 0.082345592 7.72E-07 6.112111295 0.279350549 GAGDGS(ph)DEEVDGK ddPTM_HeLa_A485_30min_R1 4 GAGDGSDEEVDGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK ;;; 238.06 7.26E-35 4250730000 4974120 3604850 3031190 7347750 4112850 3384770 4844810 3635140 3652070 8577960 TRUE FALSE FALSE 6080595.833 4026405.849 4152553.319 7749138.977 3703360.213 3561991.323 3809676.765 2743616.215 4385006.95 6439632.438 0.944245792 0.625253986 0.64484322 1.203351131 0.575088757 0.553135813 0.59159848 0.426051679 0.680940565 1 22.61854691 -5.88759525 23.44579957 0.602521571 0.831366637 0.194328976 0.206641706 7.870880553 1603.918161 0.062568328 0.070945863 1.30E-06 5.88759525 0.228845066 GAGDGS(ph)DEEVDGK ddPTM_HeLa_A486_30min_R1 4 GAGDGSDEEVDGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK ;;; 235.8 8.40E-35 9046420000 5068860 5850530 2961090 2317190 4401400 6400400 6413680 5959050 4679130 7350050 TRUE FALSE FALSE 4713559.09 5386912.696 4107703.349 5394535.424 3849335.371 5610783.722 4808909.427 4602304.4 5084720.756 5509549.639 0.855525297 0.977741022 0.745560639 0.979124571 0.698666066 1.018374294 0.872831673 0.835332232 0.922892267 1 22.39350296 GAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_HeLa_A485_30min_R1 6 GAGDGSDEEVDGKADGAEAKPAE 23 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE ;;;;; 173.92 6.20E-15 21156530000 3998210 2588530 1692670 7151980 4204610 3592890 6669150 6145030 2800060 9314720 TRUE FALSE FALSE 4887598.021 2891236.066 2318859.071 7542674.558 3785984.265 3781008.165 5244231.621 4637951.757 3362006.358 6992731.729 0.69895403 0.413463033 0.3316099 1.07864492 0.541417062 0.540705451 0.749954642 0.663253209 0.480785834 1 22.73742473 -11.05788175 2.550291669 1.544941917 0.612218015 0.25769912 0.198065361 32670131.56 12533926.81 103631181.3 0.049171136 8.75E-12 11.05788175 -0.932723901 GAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_HeLa_A486_30min_R1 7 GAGDGSDEEVDGKADGAEAKPAE 23 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE ;;;;;; 207.54 3.72E-29 26317880000 18216090 17197450 7497963 13952760 16503840 22987530 32483720 29729140 13310410 33707110 TRUE FALSE FALSE 16939236.16 15834661.43 10401375.08 32482730.41 14433774.5 20151562.27 24355949.68 22960463.8 14464167.06 25266630.26 0.670419284 0.626702543 0.411664514 1.285598043 0.571258389 0.797556384 0.963957181 0.90872679 0.572461262 1 24.59072993 -5.198474714 24.99998989 0.855846113 0.575306268 0.309276052 0.205697341 284.7334879 113051.958 0.053822494 0.093223279 6.33E-06 5.198474714 -0.280539845 GAGGS(ph)PVGVEEGLVNVGTGQK ddPTM_HeLa_A486_30min_R1 1 GAGGSPVGVEEGLVNVGTGQK 21 0 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 GAGGS(1)PVGVEEGLVNVGTGQK 284.65 5.99E-77 0 121140 148460 93319 48579 154100 157590 183650 169400 121590 192540 TRUE FALSE FALSE 112648.7116 136695.4889 129454.616 113094.367 134771.3411 138148.1481 137698.8275 130831.318 132129.5191 144326.7308 0.780511766 0.947125236 0.89695523 0.78359959 0.933793348 0.957190309 0.954077092 0.906494017 0.915488894 1 17.138979 -5.961392498 24.81805207 0.941739239 0.861627954 0.42808647 0.051906304 166.6627636 107134.9939 0.016022144 0.018167379 1.09E-06 5.961392498 -0.080111285 GAGNCPECGT(ph)PLRK ddPTM_HeLa_A486_30min_R1 2 GAGNCPECGTPLRK 14 1 P51948;P51948-2 P51948 MNAT1 CDK-activating kinase assembly factor MAT1 1 0 GAGNCPECGT(1)PLRK;GAGNCPECGT(1)PLRK ; 143.83 8.24E-08 557640000 283120 416850 552510 122745 613390 358500 388100 454020 294360 321320 TRUE FALSE FALSE 263274.75 383817.2879 766456.6687 285756.5632 536452.9066 314271.915 290993.2751 350649.5572 319875.3618 240859.3806 1.093064133 1.593532654 3.182174873 1.186404127 2.22724523 1.304794168 1.208145908 1.455826866 1.328058559 1 17.87783159 -6.313147402 12.29636993 1.284441873 1.878245536 0.221327076 0.558270843 2.50338 593.0588923 0.196946955 0.173727653 4.86E-07 6.313147402 0.593803662 GAGPQLLEELDNAPGSDAAELELAPART(ph)PPDSVKDASAAEPAAAER ddPTM_HeLa_A486_30min_R1 1 GAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAER 46 2 Q9UHR6 Q9UHR6 ZNHIT2 Zinc finger HIT domain-containing protein 2 1 0 GAGPQLLEELDNAPGS(0.001)DAAELELAPART(0.999)PPDSVKDASAAEPAAAER 145.6 1.19E-11 100920000 43807 50583 43438 28753 76159 59884 86875 81754 40171 74396 TRUE FALSE FALSE 40736.35552 46574.61886 60258.35691 66938.4371 66606.42807 52496.12094 65137.95613 63140.39888 43653.05462 55766.75736 0.730477393 0.835168137 1.080542598 1.200328659 1.19437513 0.941351504 1.168042741 1.132222884 0.782779145 1 15.76711777 -4.66656337 3.629715136 1.076957472 0.751734101 0.456142713 0.123430861 0.189489027 4.680452187 0.032385427 0.099242501 2.15E-05 4.66656337 -0.32522337 GAGQQQS(ph)QEMMEVDR ddPTM_HeLa_A486_30min_R1 1 GAGQQQSQEMMEVDR 15 0 C9JRC4;B5MBZ8;Q15435-3;Q15435 C9JRC4 PPP1R7 Protein phosphatase 1 regulatory subunit 7 1 0 GAGQQQS(1)QEMMEVDR 68.82 0.0065813 0 53089 74141 151830 21677 262730 72737 77000 100170 96366 61274 TRUE FALSE FALSE 49367.73525 68265.79714 210622.6421 50465.15149 229775.9535 63763.44848 57733.78558 77363.4777 104719.0825 45930.59157 1.074833429 1.486281687 4.585672314 1.098726356 5.00267786 1.388256634 1.256978924 1.684356222 2.279941949 1 15.48716774 GAGSYTIMVLFADQATPT(ph)SPIRVK ddPTM_HeLa_A485_30min_R1 1 GAGSYTIMVLFADQATPTSPIRVK 24 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 GAGSYTIMVLFADQAT(0.003)PT(0.498)S(0.498)PIRVK 85.932 0.0040788 39425000 3824 6058.3 5348.7 5109.8 8657 5899.2 10470 16256 5784.3 7233.8 TRUE FALSE FALSE 4674.635607 6766.765485 7327.406708 5388.935435 7795.078683 6208.07299 8232.998968 12269.19051 6945.155953 5430.546788 0.860803855 1.246056014 1.349294462 0.992337539 1.435413226 1.143176412 1.516053408 2.259291926 1.278905463 1 12.40688175 -6.849931848 5.027969331 1.632013649 1.186945241 0.167723425 0.340435678 0.278281045 11.85746311 0.138896231 0.093066038 1.41E-07 6.849931848 -0.445068407 GAGSYTIMVLFADQATPTS(ph)PIR ddPTM_HeLa_A485_30min_R1 2 GAGSYTIMVLFADQATPTSPIR 22 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 GAGSYTIMVLFADQAT(0.005)PT(0.17)S(0.825)PIR;GAGSYTIMVLFADQATPT(0.025)S(0.975)PIR ; 154.84 4.80E-10 111671000 110462 136944 150149 97396 154721 126667 136936 152907 125738 155419 TRUE FALSE FALSE 135033.8908 152958.4095 205695.3633 102716.4969 139316.434 133299.0883 107678.5049 115406.3185 150972.4633 116675.9036 1.157341719 1.310968288 1.762963534 0.880357415 1.194046326 1.14247316 0.922885546 0.989118704 1.293947239 1 16.83214711 -5.282072415 24.99608174 1.06320871 1.400478979 0.432027872 0.183786437 760.9342075 921839.2039 0.051853619 0.077009401 5.22E-06 5.282072415 0.337270268 GAGSYTIMVLFADQATPTS(ph)PIR ddPTM_HeLa_A486_30min_R1 2 GAGSYTIMVLFADQATPTSPIR 22 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 GAGSYTIMVLFADQAT(0.001)PT(0.099)S(0.9)PIR;GAGSYTIMVLFADQAT(0.001)PT(0.175)S(0.824)PIR ; 152.88 6.65E-10 115061000 129278 131883 141333 70160 164365 118687 136057 135812 114195 139528 TRUE FALSE FALSE 120216.2798 121432.1108 196060.9226 163336.0257 143748.8091 104044.6047 102014.0995 104890.5724 124093.5145 104589.2806 1.149413009 1.161037824 1.874579512 1.561689924 1.374412446 0.994792239 0.975378155 1.002880713 1.186484062 1 16.67437547 -6.193710879 4.50298353 1.028027109 1.449099236 0.491521691 0.199674241 0.205940251 8.220455097 0.073830543 0.073003306 6.40E-07 6.193710879 0.421072128 GAGSYTIMVLFADQATPTSPIR ddPTM_HeLa_A485_30min_R1 1 GAGSYTIMVLFADQATPTSPIR 22 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 80.534 0.00063347 0 7226.2 12978 9736 7461.3 10278 10522 12130 12172 7591.8 10916 FALSE FALSE TRUE 8833.64326 14495.66421 13337.75155 7868.891926 9254.686232 11072.91565 9538.326407 9186.797915 9115.404624 8194.842094 1.077951614 1.768876574 1.627578835 0.96022496 1.129330636 1.351205493 1.163942672 1.121046362 1.112334383 1 13.00050044 -5.255187052 24.98238651 1.136657444 1.519209776 0.438383861 0.191377694 453.8787544 1813555.695 0.051769386 0.08690261 5.56E-06 5.255187052 0.382552332 GAGSYTIMVLFADQATPTSPIR ddPTM_HeLa_A486_30min_R1 1 GAGSYTIMVLFADQATPTSPIR 22 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 204.82 1.72E-28 16189000 8420.2 7742.4 9272.6 3181.9 10423 6165.1 8322.1 8333.1 7234.6 8877.5 FALSE FALSE TRUE 7829.987462 7128.864027 12863.19905 7407.624004 9115.650149 5404.512644 6239.822558 6435.83504 7861.700953 6654.516217 1.17664263 1.071282088 1.933002885 1.113172432 1.369844156 0.812157108 0.937682373 0.96713793 1.181408339 1 12.70011807 -6.247687889 24.04745021 0.974998598 1.339405036 0.351679447 0.23959328 550.3934469 962481.467 0.079910923 0.079457591 5.65E-07 6.247687889 0.364406438 GAGVHS(ph)GERPPHSLSSNAR ddPTM_HeLa_A485_30min_R1 1 GAGVHSGERPPHSLSSNAR 19 1 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 GAGVHS(0.99)GERPPHS(0.008)LS(0.001)S(0.001)NAR 52.359 0.02138 180380000 37743 84683 105570 27868 90852 62512 62688 69184 72247 42127 TRUE FALSE FALSE 46138.80014 94585.94021 144624.7361 29390.35827 81806.45588 65785.03166 49294.19669 52216.51552 86746.31021 31625.51419 1.458910671 2.990811142 4.573039833 0.929324282 2.586723346 2.080125283 1.558684434 1.65108827 2.742921734 1 14.94880132 -5.283318022 24.96684103 1.855134393 3.005910179 0.278951361 0.89113633 1042.052286 1189136.879 0.249257971 0.37005672 5.21E-06 5.283318022 1.150775786 GAGVHS(ph)GERPPHSLSSNAR ddPTM_HeLa_A486_30min_R1 3 GAGVHSGERPPHSLSSNAR 19 1 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 GAGVHS(1)GERPPHSLSSNAR;GAGVHS(0.997)GERPPHS(0.002)LSSNAR;GAGVHS(1)GERPPHSLSSNAR ;; 135.76 1.18E-06 225492000 85261 109678 160404 11254.5 174463 77453 73691 90282 107401 50310 TRUE FALSE FALSE 79284.64419 100986.7158 222516.7246 26201.04477 152580.2237 67897.63634 55252.73238 69726.75944 116710.6052 37712.04854 2.102369064 2.677836918 5.900414674 0.694765885 4.045927751 1.800422915 1.46512148 1.848925268 3.094782959 1 15.2027379 -6.295047932 24.15575342 1.871362375 3.085386795 0.17540311 1.346146668 795.6694981 571875.2377 0.463700433 0.40897482 5.07E-07 6.295047932 1.214024419 GAHLTALEMLTAFASHIR ddPTM_HeLa_A485_30min_R1 1 GAHLTALEMLTAFASHIR 18 0 Q96EL3 Q96EL3 MRPL53 "39S ribosomal protein L53, mitochondrial" 0 0 212.95 7.68E-29 7333700 4347.7 6807.9 6946.3 4017.2 5586.5 7025.9 6402 8302 6075.2 5798.1 FALSE FALSE TRUE 5314.830866 7604.024684 9516.02543 4236.649464 5030.288445 7393.76526 5034.1604 6265.921483 7294.436915 4352.740376 1.221030984 1.746951122 2.1862148 0.973329236 1.155660115 1.698646053 1.15654966 1.439534854 1.675826327 1 12.08770826 -5.271838649 24.99929918 1.322876244 1.720954208 0.26110132 0.320704004 1001.670352 2407961.528 0.091216976 0.136972334 5.35E-06 5.271838649 0.398077963 GAHLTALEMLTAFASHIR ddPTM_HeLa_A486_30min_R1 1 GAHLTALEMLTAFASHIR 18 0 Q96EL3 Q96EL3 MRPL53 "39S ribosomal protein L53, mitochondrial" 0 0 94.203 0.00061043 3163100 3948 3474.4 3743.9 1518.4 4626.9 3122.4 3664.8 3520.2 4132 3564.1 FALSE FALSE TRUE 3671.265587 3199.07589 5193.638345 3534.911936 4046.551058 2737.190034 2747.828278 2718.727305 4490.165087 2671.626162 1.374168901 1.197426472 1.94399891 1.323131202 1.514639704 1.024540811 1.028522747 1.01763014 1.68068615 1 11.38350243 -6.252943369 24.70287362 1.143768275 1.473591802 0.272601844 0.261556127 739.6526784 2150604.582 0.086737406 0.08537963 5.59E-07 6.252943369 0.329823527 GAHNGQGLGNAFLSHISACDGIFHLTR ddPTM_HeLa_A486_30min_R1 1 GAHNGQGLGNAFLSHISACDGIFHLTR 27 0 J3KQ32;Q9NTK5-3;Q9NTK5 J3KQ32 OLA1 Obg-like ATPase 1 0 0 174.53 9.05E-24 7456800 5305 5347.9 4675.9 5019.8 10066 7447.9 7347.3 8149.6 5437.2 8752.5 FALSE FALSE TRUE 4933.146895 4924.112927 6486.533705 11686.34809 8803.428418 6529.053823 5508.927828 6294.113985 5908.500874 6560.817031 0.751910451 0.750533494 0.988677732 1.781233653 1.341818919 0.995158651 0.839671005 0.959349111 0.900573945 1 12.67965977 -6.510859554 22.87772753 0.920925709 1.134997281 0.099772493 0.281268483 501.5464908 954668.97 0.116989062 0.097716182 3.08E-07 6.510859554 0.214071572 GAILSEEELAAMS(ph)PTAAAVAK ddPTM_HeLa_A485_30min_R1 4 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 GAILSEEELAAMS(0.854)PT(0.146)AAAVAK;GAILSEEELAAMS(0.998)PT(0.002)AAAVAK;GAILSEEELAAMS(0.88)PT(0.12)AAAVAK;GAILSEEELAAMS(0.986)PT(0.014)AAAVAK ;;; 312.46 6.30E-102 279913000 313251 309693 286055 382023 458435 338580 378480 432644 324360 475546 TRUE FALSE FALSE 382932.6042 345908.9024 391878.6482 402891.9492 412791.6017 356307.5253 297614.6561 326537.3806 389456.0768 357001.134 1.072636941 0.968929422 1.097695808 1.128545292 1.156275324 0.998057125 0.833651851 0.914667629 1.090909915 1 18.44556913 -6.514225919 24.8322781 0.947433199 1.081087576 0.375006514 0.076289413 408.0013189 1170907.618 0.029646577 0.024182367 3.06E-07 6.514225919 0.133654377 GAILSEEELAAMS(ph)PTAAAVAK ddPTM_HeLa_A486_30min_R1 3 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 GAILSEEELAAMS(0.998)PT(0.002)AAAVAK;GAILSEEELAAMS(0.999)PT(0.001)AAAVAK;GAILSEEELAAMS(0.999)PT(0.001)AAAVAK ;; 301.77 4.79E-92 395280000 475765 556783 368914 171403 562007 545671 603412 609438 452122 601569 TRUE FALSE FALSE 442416.3304 512661.4873 511767.3807 399034.8462 491514.8416 478351.66 452431.9354 470682.2713 491312.299 450932.2068 0.981114952 1.136892596 1.1349098 0.884910947 1.089997197 1.060806154 1.00332584 1.043798301 1.089548033 1 18.78255103 GAKEEHGGLIRS(ph)PR ddPTM_HeLa_A485_30min_R1 9 GAKEEHGGLIRSPR 14 2 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR ;;;;;;;; 126.84 1.17E-05 1.04E+11 22101520 43869970 40170020 21397510 72548640 63123320 76761140 126906460 40756420 38435640 TRUE FALSE FALSE 27017926.87 49000181.37 55030582.01 22566401.79 65325442.67 66428359.43 60360495.36 95782451.7 48935859.65 28854342.3 0.936355665 1.698190895 1.907185457 0.782079922 2.26397268 2.302196277 2.091903351 3.319516026 1.695961708 1 24.78228511 -5.791769075 24.98207243 2.23671378 1.398343694 0.254677635 0.629474248 248.8823102 204998.9698 0.187550444 0.212687496 1.62E-06 5.791769075 -0.838370085 GAKEEHGGLIRS(ph)PR ddPTM_HeLa_A486_30min_R1 9 GAKEEHGGLIRSPR 14 2 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR;GAKEEHGGLIRS(1)PR ;;;;;;;; 176.69 3.67E-13 62125790000 25665580 20924690 24270860 14233220 50456350 22711880 35901650 44323380 16644880 27243830 TRUE FALSE FALSE 23866555.38 19266541.36 33669186.99 33135655.47 44127644.1 19909919.16 26918677.44 34231913.95 18087671.6 20421797.64 1.168680436 0.943430236 1.648688699 1.622563109 2.160810957 0.9749347 1.318134569 1.676243911 0.885704183 1 24.28360653 -7.774512215 24.99723127 0.942851654 1.44030074 0.245684431 0.347869127 393.864638 753105.4699 0.343667023 0.090939277 1.68E-08 7.774512215 0.497449086 GALDLETCEKQDIMPEVDKQSGS(ph)PESR ddPTM_HeLa_A486_30min_R1 1 GALDLETCEKQDIMPEVDKQSGSPESR 27 2 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 GALDLETCEKQDIMPEVDKQS(0.031)GS(0.856)PES(0.114)R 159.75 3.14E-11 456680000 641270 643810 336630 424400 817580 755980 1033000 1142100 502150 954330 TRUE FALSE FALSE 596320.2845 592792.1509 466982.1513 988024.648 715031.4928 662714.8738 774532.474 882068.7619 545676.7663 715359.5564 0.833595189 0.828663216 0.652793616 1.381158103 0.9995414 0.926408081 1.082717729 1.233042536 0.762800694 1 19.44830903 -5.230900532 24.99976979 1.058279901 0.777381925 0.38581838 0.163782323 716.9976109 586949.1039 0.04333442 0.07504624 5.88E-06 5.230900532 -0.280897976 GALHTVS(ph)HEDIR ddPTM_HeLa_A485_30min_R1 8 GALHTVSHEDIR 12 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHT(0.034)VS(0.966)HEDIR;GALHT(0.001)VS(0.999)HEDIR;GALHTVS(1)HEDIR;GALHTVS(1)HEDIR;GALHT(0.018)VS(0.982)HEDIR;GALHT(0.003)VS(0.997)HEDIR;GALHT(0.004)VS(0.996)HEDIR;GALHT(0.06)VS(0.94)HEDIR ;;;;;;; 246.63 3.14E-28 29959480000 10064700 14980600 14661170 9588620 13649550 13816070 13547650 13914380 11687620 13085830 TRUE FALSE FALSE 12303557.79 16732450.86 20084946.89 10112422.03 12290552.88 14539458.06 10653083.9 10501856.49 14033218.13 9823773.408 1.252426871 1.703261075 2.04452465 1.029382663 1.25110305 1.480027832 1.084418732 1.069024707 1.428495706 1 23.22784585 -5.277294841 24.99067139 1.204663847 1.670389923 0.462433364 0.234371682 707.5746578 1115246.043 0.066492785 0.098994309 5.28E-06 5.277294841 0.465726076 GALHTVS(ph)HEDIR ddPTM_HeLa_A486_30min_R1 8 GALHTVSHEDIR 12 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHTVS(1)HEDIR;GALHT(0.007)VS(0.993)HEDIR;GALHTVS(1)HEDIR;GALHT(0.016)VS(0.984)HEDIR;GALHT(0.007)VS(0.993)HEDIR;GALHT(0.012)VS(0.988)HEDIR;GALHT(0.005)VS(0.995)HEDIR;GALHT(0.032)VS(0.968)HEDIR ;;;;;;; 212.11 7.92E-18 25826000000 11132410 12851610 12386510 3469353 13672690 9342330 10266900 10467270 10488780 11194750 TRUE FALSE FALSE 10352085.55 11833201.62 17182898.39 8076829.115 11957733.73 8189768.31 7698013.028 8084101.12 11397955.9 8391511.734 1.233637737 1.410139435 2.047652311 0.962499889 1.424979683 0.975958632 0.917357119 0.96336648 1.358272056 1 23.00049931 -5.300801846 24.99858193 1.087040099 1.548443439 0.429881537 0.251937137 500.8944403 318110.347 0.07160144 0.10620411 5.00E-06 5.300801846 0.46140334 GALHTVS(ph)HEDIRDIR ddPTM_HeLa_A485_30min_R1 2 GALHTVSHEDIRDIR 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHT(0.001)VS(0.999)HEDIRDIR;GALHT(0.003)VS(0.997)HEDIRDIR ; 176.28 5.31E-13 1597360000 231313 568100 691580 214770 1246030 1051600 1269470 2574200 554830 414130 TRUE FALSE FALSE 282767.7788 634534.3532 947424.221 226502.3413 1121970.878 1106660.15 998237.3639 1942873.414 666179.2918 310895.0125 0.909528193 2.040992385 3.047408877 0.728549292 3.608841677 3.559594414 3.210850363 6.249291033 2.142778961 1 18.24606795 -5.785329528 24.46914179 3.566691195 1.804845667 0.227602022 1.396422554 237.775713 243536.8703 0.417241623 0.47338074 1.64E-06 5.785329528 -1.761845528 GALHTVS(ph)HEDIRDIR ddPTM_HeLa_A486_30min_R1 2 GALHTVSHEDIRDIR 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHT(0.049)VS(0.951)HEDIRDIR;GALHT(0.029)VS(0.971)HEDIRDIR ; 143.75 5.35E-08 1302740000 293980 273680 700980 261480 1462960 317830 680660 831190 303060 389070 TRUE FALSE FALSE 273373.5201 251992.6001 972418.2289 608738.6545 1279461.915 278619.3661 510351.6687 641946.1818 329329.4848 291644.3396 0.937352395 0.864040771 3.334260594 2.087263738 4.387062396 0.955339529 1.749911106 2.201126834 1.129216104 1 18.15385055 GALLLAR ddPTM_HeLa_A486_30min_R1 1 GALLLAR 7 0 H0Y8E8 H0Y8E8 BAP1 0 0 47.925 0.03344 4028400 17076 29877 23533 13479 38532 27061 35425 33548 26685 24497 FALSE FALSE TRUE 15879.06058 27509.43771 32645.60784 31379.79319 33698.95726 23722.48896 26561.29031 25909.85275 28998.07729 18362.79175 0.864741091 1.498107591 1.777812888 1.708879217 1.835176139 1.291878124 1.446473427 1.410997472 1.579175851 1 14.16449779 GALLVLNHGAAPLLALPPQGPPGS(ph)GPPT(ph)PSR ddPTM_HeLa_A486_30min_R1 1 GALLVLNHGAAPLLALPPQGPPGSGPPTPSR 31 0 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 2 0 GALLVLNHGAAPLLALPPQGPPGS(0.984)GPPT(0.822)PS(0.194)R 92.01 0.0004505 90667000 20237 25883 19944 7784.9 23971 20926 20505 19306 25541 23704 TRUE FALSE FALSE 18818.4908 23831.93682 27666.85092 18123.64063 20964.33366 18344.36288 15374.43212 14910.44525 27754.91444 17768.36411 1.059100921 1.341256666 1.55708487 1.019994892 1.179868531 1.032417096 0.865269983 0.839156894 1.562041067 1 14.11702324 -5.295685612 24.67316612 1.058873209 1.321358523 0.209106772 0.219998792 761.6269697 548722.8422 0.062096403 0.092109461 5.06E-06 5.295685612 0.262485314 GALPPS(ph)PALPRPSR ddPTM_HeLa_A485_30min_R1 5 GALPPSPALPRPSR 14 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR ;;;; 177.58 1.95E-13 2871720000 810023 1403910 1374620 811736 1480750 1260810 1247190 1499440 1115950 1067070 TRUE FALSE FALSE 990209.8218 1568085.062 1883149.141 856079.0823 1333321.331 1326824.062 980717.6679 1131699.989 1339910.929 801069.087 1.23611039 1.957490418 2.350794921 1.068670725 1.664427391 1.656316644 1.224261033 1.412737063 1.672653396 1 19.61156715 -10.84681994 0.126853569 0.118720964 1.960868349 0.207930532 0.355751875 80.47282986 1.533855346 25.31190564 3.810450227 1.42E-11 10.84681994 1.842147385 GALPPS(ph)PALPRPSR ddPTM_HeLa_A486_30min_R1 5 GALPPSPALPRPSR 14 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR;GALPPS(1)PALPRPSR ;;;; 178.85 1.38E-17 2915550000 1941070 2412780 2507600 651878 3263160 1888640 2158600 2422900 1978090 1867550 TRUE FALSE FALSE 1805011.017 2221582.526 3478609.876 1517604.928 2853864.045 1655638.799 1618495.449 1871258.562 2149552.434 1399903.324 1.28938262 1.586954247 2.484892932 1.08407838 2.038615093 1.182680811 1.156148014 1.336705563 1.535500628 1 20.41689577 -6.285387892 24.81648079 1.257872371 1.700427549 0.261236145 0.381741952 1057.169458 1095480.629 0.131856225 0.116347922 5.18E-07 6.285387892 0.442555178 GALQNIIPAS(ph)TGAAK ddPTM_HeLa_A485_30min_R1 2 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 GALQNIIPAS(0.986)T(0.014)GAAK;GALQNIIPAS(0.983)T(0.017)GAAK ; 219.97 1.53E-33 671260000 1063670 1298610 1106360 1486950 1467350 1502220 1944050 2006950 1334390 1951710 TRUE FALSE FALSE 1300279.722 1450471.143 1515648.603 1568178.313 1321255.482 1580873.916 1528687.836 1514742.366 1602189.833 1465184.616 0.887451116 0.98995794 1.034442068 1.070294007 0.901767237 1.078958856 1.043341446 1.033823553 1.093507136 1 20.48265103 -4.298498666 2.295737353 1.031982336 0.858457912 0.427366391 0.050628555 0.518419638 3.445731371 0.013236035 0.175355884 5.03E-05 4.298498666 -0.173524425 GALQNIIPAS(ph)TGAAK ddPTM_HeLa_A486_30min_R1 2 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 GALQNIIPAS(0.948)T(0.052)GAAK;GALQNIIPAS(0.697)T(0.303)GAAK ; 240.63 3.46E-41 1019430000 1896320 1705700 1114870 909720 1652010 1717150 2055830 2107950 1463810 2315200 TRUE FALSE FALSE 1763397.761 1570534.12 1546577.521 2117874.135 1444799.501 1505305.492 1541439.59 1628015.801 1590694.229 1735458.851 1.016098861 0.904967651 0.891163464 1.220353991 0.832517291 0.86738184 0.888202903 0.938089544 0.916584239 1 20.72688573 GALQNIIPASTGAAK ddPTM_HeLa_A485_30min_R1 3 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;; ;; 345.57 2.78E-115 890250000 975390 1132910 1081950 1046060 1335900 1346960 1624420 1776220 1078430 1449210 FALSE FALSE TRUE 1192362.14 1265393.969 1482208.329 1103203.609 1202893.105 1417484.743 1277349.397 1340599.26 1294861.009 1087948.618 1.095972844 1.163100857 1.362388172 1.014021794 1.105652497 1.302896773 1.17408982 1.232226631 1.190185812 1 20.05317899 -9.990291723 5.969276306 0.999999827 1.18458771 0.245698985 0.095738618 2.21E-07 3.74E-08 0.092859619 0.022521745 1.02E-10 9.990291723 0.184587883 GALQNIIPASTGAAK ddPTM_HeLa_A486_30min_R1 2 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 286.19 2.34E-65 123594000 334510 353480 261000 109316 389140 346070 387870 391750 295170 413880 FALSE FALSE TRUE 311062.5764 325468.9574 362066.1898 254493.1725 340330.4326 303375.402 290820.8235 302557.0768 320755.5733 310241.7541 1.002645751 1.049081734 1.167045329 0.820306001 1.09698462 0.977867737 0.937400655 0.975230035 1.033889117 1 18.24303334 -5.231839766 24.99835982 0.979688164 1.070539978 0.245626483 0.076620013 1044.161046 881845.4781 0.020051404 0.034723555 5.86E-06 5.231839766 0.090851814 GALSLQGS(ph)IMTVGEK ddPTM_HeLa_A485_30min_R1 1 GALSLQGSIMTVGEK 15 0 X6REF7;A0A0C4DG36;Q8IWL2;Q8IWL1;Q8IWL2-2 X6REF7 SFTPA2;SFTPA1 Pulmonary surfactant-associated protein A1;Pulmonary surfactant-associated protein A2 1 0 GALS(0.016)LQGS(0.492)IMT(0.492)VGEK 53.754 0.0097297 0 128260 125580 110980 110010 155930 122490 138510 154840 122340 165790 TRUE FALSE FALSE 156790.9945 140265.4886 152036.1203 116019.5677 140405.0617 128903.387 108916.207 116865.2472 146892.5158 124461.6041 1.259753926 1.126977991 1.221550383 0.93217156 1.128099406 1.035687977 0.875098853 0.938966262 1.180223546 1 16.92534122 -5.2513024 24.68414272 1.010358137 1.195182505 0.477844232 0.090822779 540.5611684 1316294.612 0.025058444 0.042784032 5.61E-06 5.2513024 0.184824368 GAMPPAPVPAGTPAPPGPATMMPDGTLGLT(ph)PPTTER ddPTM_HeLa_A485_30min_R1 2 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER 36 0 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 1 0 GAMPPAPVPAGTPAPPGPAT(0.001)MMPDGT(0.002)LGLT(0.995)PPT(0.001)T(0.001)ER;GAMPPAPVPAGTPAPPGPAT(0.003)MMPDGT(0.023)LGLT(0.837)PPT(0.068)T(0.068)ER ; 131.1 2.65E-06 174007000 50120 76431 82490 52887 86884 70842 77362 94203 74767 75250 TRUE FALSE FALSE 61269.02109 85368.94059 113006.4837 55776.08289 78233.52389 74551.17758 60832.97671 71099.56655 89772.0511 56491.55987 1.084569469 1.511180445 2.000413583 0.987334799 1.384871016 1.319687007 1.076850716 1.258587419 1.589123248 1 15.78574772 -5.2949563 24.99644065 1.245389995 1.529967787 0.208206065 0.26806121 1021.517928 761831.2003 0.075526185 0.112031052 5.07E-06 5.2949563 0.284577792 GAMPPAPVPAGTPAPPGPATMMPDGTLGLT(ph)PPTTER ddPTM_HeLa_A486_30min_R1 2 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER 36 0 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 1 0 GAMPPAPVPAGTPAPPGPAT(0.002)MMPDGT(0.084)LGLT(0.913)PPTTER;GAMPPAPVPAGTPAPPGPATMMPDGTLGLT(0.997)PPT(0.001)T(0.001)ER ; 153.24 1.12E-09 156708000 112346 115901 118965 41769 146287 104416 121206 126637 100058 120589 TRUE FALSE FALSE 104471.1256 106716.5827 165031.434 97240.34289 127938.3204 91534.21554 90878.97681 97804.51957 108731.108 90392.7295 1.155746996 1.180588121 1.825715795 1.075754028 1.415360739 1.012628074 1.005379275 1.081995423 1.202874486 1 16.46391912 -6.265295621 24.89671537 1.062250396 1.335641946 0.312824389 0.20005247 405.6203415 2618761.322 0.069186088 0.063338246 5.43E-07 6.265295621 0.27339155 GANPVEIR ddPTM_HeLa_A485_30min_R1 2 GANPVEIR 8 0 P10809;E7EXB4;E7ESH4;P10809-2 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 113.41 0.009683 84889000 107086 154032 278500 103392 292530 148876 159003 143700 230551 177163 FALSE FALSE TRUE 130906.9113 172044.7025 381528.7394 109040.0432 263404.6861 156670.9172 125030.7101 108457.3497 276820.471 132999.5245 0.984266009 1.293573816 2.868647393 0.819852879 1.980493441 1.177981032 0.940083888 0.81547171 2.081364365 1 17.02106156 -6.353665574 13.76204847 1.174765715 1.601231394 0.086898542 0.622308016 3.492417726 514.9136758 0.21651139 0.190929251 4.43E-07 6.353665574 0.426465679 GANPVEIRR ddPTM_HeLa_A485_30min_R1 3 GANPVEIRR 9 1 P10809;E7EXB4;E7ESH4;P10809-2 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;; ;; 135.55 0.00045184 265952000 125289.9 320699.8 208008.8 86811.3 247820.3 335918 296465.4 517467 175542.3 141943.5 FALSE FALSE TRUE 153160.206 358202.8519 284959.9111 91553.5815 223146.4408 353506.1471 233123.1454 390557.4069 210772.0294 106559.5977 1.437319672 3.36152594 2.674183435 0.859177244 2.09409988 3.31745009 2.187725464 3.665154667 1.977973209 1 16.70130102 GAPHS(ph)SPAR ddPTM_HeLa_A485_30min_R1 1 GAPHSSPAR 9 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 GAPHS(0.73)S(0.27)PAR 67.726 0.012031 15885000 18874 12278 5362.5 26433 4480.7 38201 7833.6 12636 18791 16864 TRUE FALSE FALSE 23072.45619 13713.8053 7346.311902 27876.96786 4034.585775 40201.14529 6159.887365 9537.001188 22562.18134 12660.11516 1.822452315 1.083229112 0.580272123 2.201952155 0.318684761 3.175417031 0.486558557 0.753310777 1.782146612 1 13.62800291 GAPHSS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 GAPHSSPAR 9 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 GAPHS(0.246)S(0.754)PAR 79.82 0.0060865 22712000 9645.9 5210.4 4335.6 13919 3082.9 18050 3712.7 9341.8 8449.1 11523 TRUE FALSE FALSE 11791.59718 5819.710956 5939.518859 14679.35973 2775.955651 18995.07009 2919.451315 7050.708903 10144.75687 8650.528165 1.363107194 0.672757876 0.686607655 1.696932192 0.320900134 2.195827784 0.337488216 0.815061089 1.172732656 1 13.07857251 GAPSQDDESGGIEDS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 GAPSQDDESGGIEDSPDR 18 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 GAPSQDDESGGIEDS(1)PDR 217.42 5.26E-27 0 56068 84659 82021 67476 102660 72515 72977 81755 80905 116810 TRUE FALSE FALSE 68540.13317 94559.13361 112363.9811 71162.04302 92438.80994 76311.77327 57384.86778 61704.45806 97141.8914 87691.41673 0.781605951 1.078316865 1.281356663 0.811505227 1.05413749 0.870230818 0.654395492 0.703654478 1.107769666 1 16.42014802 -6.365784674 5.290802096 0.831982525 1.010218385 0.108324488 0.18015853 0.417667104 17.3483083 0.065150823 0.057173894 4.31E-07 6.365784674 0.17823586 GAPSS(ph)PATGVLPS(ph)PQGK ddPTM_HeLa_A485_30min_R1 2 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 2 0 GAPS(0.097)S(0.903)PATGVLPS(1)PQGK;GAPS(0.097)S(0.903)PATGVLPS(1)PQGK ; 201.18 9.87E-25 650390000 488790 478590 424040 583710 639440 497430 660170 689200 462440 749460 TRUE FALSE FALSE 597519.6492 534556.9373 580910.0418 615596.5993 575775.1084 523474.6656 519119.2864 520172.6194 555247.4662 562633.4148 1.062005266 0.950098098 1.032484077 1.094134445 1.023357471 0.930400954 0.922659893 0.924532041 0.986872538 1 19.10183571 -6.222951988 7.19321988 0.946299062 1.031554278 0.473406587 0.041655233 0.21377841 33.59921247 0.014283216 0.014144525 5.98E-07 6.222951988 0.085255215 GAPSS(ph)PATGVLPS(ph)PQGK ddPTM_HeLa_A486_30min_R1 2 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 2 0 GAPS(0.086)S(0.914)PATGVLPS(1)PQGK;GAPS(0.428)S(0.572)PATGVLPS(1)PQGK ; 235.75 6.80E-42 215400000 473400 499900 324590 185998 530100 516720 560530 553460 380870 552380 TRUE FALSE FALSE 440217.1046 460286.1034 450279.9408 433012.7438 463609.915 452972.34 420279.4653 427449.2399 413884.1183 414060.4526 1.063171095 1.11163986 1.087473913 1.045771798 1.119667218 1.093976344 1.015019577 1.032335344 0.999574134 1 18.65948189 -6.764704657 24.96453715 1.014426858 1.087711526 0.74062261 0.021780755 44.22319503 338101.0487 0.008851242 0.006242412 1.72E-07 6.764704657 0.073284667 GAPSS(ph)PATGVLPSPQGK ddPTM_HeLa_A485_30min_R1 3 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 0 GAPS(0.003)S(0.997)PATGVLPSPQGK;GAPS(0.2)S(0.8)PATGVLPSPQGK;GAPS(0.093)S(0.907)PATGVLPSPQGK ;; 258.14 1.73E-51 1008510000 1114980 1285880 1127500 1233430 1483760 1171460 1483620 1694840 1162450 1566780 TRUE FALSE FALSE 1363003.454 1436252.48 1544609.169 1300809.158 1336031.645 1232795.834 1166632.467 1279177.833 1395743.052 1176210.58 1.158809041 1.221084476 1.313208021 1.105932202 1.135877934 1.048108098 0.991856804 1.087541512 1.186643851 1 20.16571494 -5.420770752 5.551930707 1.07763541 1.229601263 0.539073082 0.064674343 0.184775292 8.21578701 0.019129958 0.028503789 3.80E-06 5.420770752 0.151965853 GAPSS(ph)PATGVLPSPQGK ddPTM_HeLa_A486_30min_R1 4 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 0 GAPS(0.017)S(0.983)PATGVLPSPQGK;GAPS(0.071)S(0.929)PATGVLPSPQGK;GAPS(0.018)S(0.982)PATGVLPSPQGK;GAPS(0.016)S(0.984)PATGVLPSPQGK ;;; 239.87 2.46E-42 1710500000 1739170 1895910 1362640 606800 1846900 1722640 1947810 1920050 1434030 1877000 TRUE FALSE FALSE 1617263.164 1745671.187 1890290.701 1412661.066 1615244.58 1510118.191 1460447.336 1482896.529 1558332.875 1406986.983 1.149451405 1.240715947 1.343502622 1.00403279 1.148016719 1.073299334 1.037996338 1.053951847 1.107567372 1 20.42417755 -5.268809743 24.99695458 1.066160725 1.244172589 0.659798448 0.060411761 337.7925438 1145640.186 0.016802459 0.02552719 5.39E-06 5.268809743 0.178011863 GAPVIVPELGKPRQS(ph)PLTYEDHGAPFAGHLPR ddPTM_HeLa_A485_30min_R1 1 GAPVIVPELGKPRQSPLTYEDHGAPFAGHLPR 32 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GAPVIVPELGKPRQS(0.997)PLT(0.003)YEDHGAPFAGHLPR 186.05 2.19E-21 1357700000 290760 454620 356250 239900 527290 508840 590290 760910 358690 372350 TRUE FALSE FALSE 355438.5589 507783.8543 488041.6998 253005.1295 474791.1562 535482.0756 464169.7193 574295.6294 430675.7929 279529.9976 1.271557836 1.816563012 1.745936765 0.905109046 1.698533826 1.915651559 1.660536341 2.05450447 1.540714044 1 18.09264359 -5.952104478 24.99999712 1.713529527 1.46147783 0.05670215 0.353770163 277.8725424 145039.5982 0.107152899 0.121499942 1.12E-06 5.952104478 -0.252051697 GAPVIVPELGKPRQS(ph)PLTYEDHGAPFAGHLPR ddPTM_HeLa_A486_30min_R1 1 GAPVIVPELGKPRQSPLTYEDHGAPFAGHLPR 32 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GAPVIVPELGKPRQS(1)PLTYEDHGAPFAGHLPR 212.17 4.19E-30 1070800000 781000 652440 544380 221020 972300 610360 809540 787500 469230 855390 TRUE FALSE FALSE 726255.9331 600738.2783 755178.515 514545.7297 850345.0677 535059.9889 606984.5296 608203.441 509903.2342 641194.7763 1.132660402 0.936904511 1.177767728 0.802479603 1.326188389 0.834473406 0.946646093 0.948547093 0.795239221 1 19.29040315 GAPVNIS(ph)SSDLTGR ddPTM_HeLa_A485_30min_R1 4 GAPVNISSSDLTGR 14 0 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GAPVNIS(0.787)S(0.191)S(0.023)DLTGR;GAPVNIS(0.975)S(0.024)S(0.001)DLTGR;GAPVNIS(0.424)S(0.424)S(0.152)DLTGR;GAPVNIS(0.497)S(0.497)S(0.005)DLTGR ;;; 306.72 5.71E-59 3059970000 884910 1355660 1357910 925790 1557340 1202520 1297590 1388000 1064360 1345520 TRUE FALSE FALSE 1081755.177 1514192.644 1860257.416 976363.5635 1402285.761 1265482.088 1020349.296 1047590.824 1277967.289 1010106.626 1.07093167 1.499042383 1.841644602 0.966594553 1.388255185 1.252820301 1.010140187 1.037109149 1.265180582 1 19.94607616 -6.091008074 1.043462248 1.085322972 1.421073887 0.224408208 0.234055661 0.765016002 1.773280561 0.122323934 0.1311265 8.11E-07 6.091008074 0.335750915 GAPVNIS(ph)SSDLTGR ddPTM_HeLa_A486_30min_R1 4 GAPVNISSSDLTGR 14 0 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GAPVNIS(0.975)S(0.023)S(0.002)DLTGR;GAPVNIS(0.531)S(0.173)S(0.296)DLTGR;GAPVNIS(0.945)S(0.055)S(0.001)DLTGR;GAPVNIS(0.436)S(0.436)S(0.127)DLTGR ;;; 260.07 1.05E-41 2798500000 1024430 1144410 1046620 337102 1296290 872240 1093340 1137790 978790 1054470 TRUE FALSE FALSE 952622.7472 1053722.784 1451899.293 784790.4922 1133697.221 764631.8971 819774.7678 878740.0548 1063632.305 790423.8486 1.205204966 1.333111072 1.836861699 0.992872993 1.434290252 0.967369467 1.03713314 1.11173272 1.345648043 1 19.59226695 -5.29972121 24.99881598 1.13406939 1.445865083 0.346181868 0.208327362 626.4162845 409061.3552 0.05840092 0.086624233 5.02E-06 5.29972121 0.311795692 GAQAS(ph)SGSPALPR ddPTM_HeLa_A485_30min_R1 1 GAQASSGSPALPR 13 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 GAQAS(0.455)S(0.272)GS(0.272)PALPR 97.86 0.00098348 70773000 132590 258560 239790 91750 244320 210100 192930 200200 176530 125800 TRUE FALSE FALSE 162084.1881 288796.3428 328498.2995 96762.07018 219994.6429 221100.5111 151708.9294 151100.6361 211957.9518 94440.37518 1.716259468 3.057975387 3.478367159 1.024583712 2.329455411 2.341165108 1.606399055 1.599958024 2.244357367 1 16.52711615 -7.782984552 0.138702529 0.257726352 3.266434845 0.257904121 0.662843297 8.676076274 1.052266595 10.95233753 8.956967168 1.65E-08 7.782984552 3.008708493 GAQASS(ph)GSPALPR ddPTM_HeLa_A485_30min_R1 1 GAQASSGSPALPR 13 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 GAQAS(0.008)S(0.534)GS(0.457)PALPR 185.95 3.36E-15 0 290380 364220 381750 260700 353990 344530 392990 439920 322120 373260 TRUE FALSE FALSE 354974.0292 406812.3607 522975.2109 274941.3809 318745.5127 362569.0581 309024.4761 332028.9302 386766.5293 280213.1513 1.266800032 1.451796102 1.866347844 0.98118657 1.137510895 1.293904502 1.102819317 1.184915585 1.380258305 1 18.09616514 -5.278502035 24.99813216 1.165038998 1.520662854 0.479522132 0.178234851 708.3191392 1037741.572 0.050417633 0.074982834 5.27E-06 5.278502035 0.355623857 GAQASS(ph)GSPALPR ddPTM_HeLa_A486_30min_R1 1 GAQASSGSPALPR 13 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 GAQAS(0.008)S(0.516)GS(0.476)PALPR 164.56 7.58E-12 804230000 496080 551430 521060 160830 649340 443190 520010 568570 416720 508630 TRUE FALSE FALSE 461307.3538 507732.6785 722828.3865 374420.3679 567893.7223 388513.7238 389897.9979 439119.0228 452841.6251 381265.7374 1.209936557 1.331702875 1.895865051 0.982045674 1.489495821 1.019010327 1.02264106 1.151740059 1.187732284 1 18.54043736 -6.010910968 1.463089105 1.085741861 1.419664071 0.273726615 0.230454536 0.541913889 2.375405411 0.093845341 0.104020789 9.75E-07 6.010910968 0.33392221 GAQASSGS(ph)PALPR ddPTM_HeLa_A485_30min_R1 3 GAQASSGSPALPR 13 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 GAQAS(0.013)S(0.375)GS(0.612)PALPR;GAQAS(0.015)S(0.089)GS(0.896)PALPR;GAQAS(0.002)S(0.048)GS(0.95)PALPR ;; 194.77 6.03E-18 1356620000 1302810 1959240 1776940 1246670 1883720 1712350 1875910 2140140 1526810 1655820 TRUE FALSE FALSE 1592615.59 2188356.075 2434304.051 1314772.425 1696170.223 1802005.998 1475106.504 1615267.309 1833226.762 1243054.547 1.281211346 1.76046665 1.9583244 1.057694876 1.364517934 1.449659633 1.18667882 1.299433973 1.474775798 1 20.24545817 -5.26649103 24.99455311 1.283273899 1.676047383 0.428511322 0.213162398 400.3099022 1980654.771 0.059025869 0.090659317 5.41E-06 5.26649103 0.392773484 GAQASSGS(ph)PALPR ddPTM_HeLa_A486_30min_R1 2 GAQASSGSPALPR 13 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 GAQAS(0.008)S(0.11)GS(0.882)PALPR;GAQAS(0.006)S(0.016)GS(0.978)PALPR ; 173.26 2.91E-10 0 990800 1134770 1032650 307460 1249340 903350 956330 1037090 893210 1033800 TRUE FALSE FALSE 921350.0365 1044846.692 1432519.735 715782.4182 1092636.128 791903.8616 717046.119 800967.2465 970634.162 774929.7511 1.188946527 1.348311497 1.848580124 0.923673942 1.409980874 1.021904064 0.925304672 1.033599814 1.252544712 1 19.56370601 -5.288094101 24.99939948 1.087158902 1.450582771 0.410594475 0.208932781 741.1922838 695160.8288 0.059323647 0.088017893 5.15E-06 5.288094101 0.36342387 GAQPGRHS(ph)VTGYGDCAVGAR ddPTM_HeLa_A485_30min_R1 2 GAQPGRHSVTGYGDCAVGAR 20 1 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 GAQPGRHS(0.999)VT(0.001)GYGDCAVGAR;GAQPGRHS(0.996)VT(0.004)GYGDCAVGAR ; 228.18 6.19E-36 1270370000 620750 716350 820150 627570 926950 613310 872170 785700 745340 860730 TRUE FALSE FALSE 758833.6959 800120.9011 1123557.614 661852.56 834659.6033 645421.9632 685823.7545 593005.8431 894922.9013 646165.8516 1.174363662 1.23825934 1.738806858 1.024276598 1.291711101 0.998848766 1.061374186 0.917730087 1.384973996 1 19.30154498 GAQPGRHS(ph)VTGYGDCAVGAR ddPTM_HeLa_A486_30min_R1 3 GAQPGRHSVTGYGDCAVGAR 20 1 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 GAQPGRHS(0.991)VT(0.009)GYGDCAVGAR;GAQPGRHS(0.996)VT(0.004)GYGDCAVGAR;GAQPGRHS(0.998)VT(0.002)GYGDCAVGAR ;; 242.6 1.43E-46 3389000000 749250 909170 925490 280357 1011700 834540 903690 916900 755310 791680 TRUE FALSE FALSE 696731.4441 837124.0581 1283864.513 652685.2645 884803.1523 731582.9398 677577.2037 708141.8858 820780.8789 593438.175 1.174059023 1.410633986 2.163434318 1.099837004 1.490977813 1.232787122 1.141782299 1.193286707 1.383094168 1 19.17873821 -5.935989689 1.476882433 1.198976981 1.530635526 0.193508505 0.281075848 0.673864473 3.033960252 0.113250316 0.133581413 1.16E-06 5.935989689 0.331658544 GARPPAAGPGGDEDEDEEDTAPESALDTS(ph)LDK ddPTM_HeLa_A486_30min_R1 1 GARPPAAGPGGDEDEDEEDTAPESALDTSLDK 32 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 GARPPAAGPGGDEDEDEEDTAPESALDT(0.137)S(0.863)LDK 156.26 2.34E-10 98481000 36982 37815 20891 12034 25008 37658 39052 28502 31170 51416 TRUE FALSE FALSE 34389.75278 34818.40168 28980.55468 28015.76016 21871.26345 33012.13884 29280.77655 22012.71679 33871.8407 38541.09894 0.89228781 0.903409675 0.751938981 0.726906106 0.567478978 0.856543787 0.759728637 0.571149173 0.878849893 1 15.23411009 -4.773468336 7.187520609 0.743268985 0.898498938 0.13727023 0.125820697 0.200118749 53.24429509 0.031186017 0.070784157 1.68E-05 4.773468336 0.155229953 GARS(ph)PEDGPSAR ddPTM_HeLa_A485_30min_R1 2 GARSPEDGPSAR 12 1 H0YEB0;Q8TDY4-2;Q8TDY4-3;Q8TDY4 H0YEB0 ASAP3 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3" 1 0 GARS(1)PEDGPSAR;GARS(0.998)PEDGPS(0.002)AR ; 110.29 0.00020496 996410000 176044 196127 195681 292830 211771 227014 233150 300640 179255 292380 TRUE FALSE FALSE 215204.3805 219062.3466 268071.5449 308826.5614 190686.3357 238900.102 183335.5978 226907.5686 215229.8343 219495.0469 0.980452104 0.998028656 1.221310224 1.406986471 0.868750062 1.088407713 0.835260752 1.033770793 0.980568069 1 17.74382886 -5.814677512 24.99999512 0.968885637 1.145697896 0.322000642 0.130608225 126.5961519 59447.16855 0.042494459 0.048184232 1.53E-06 5.814677512 0.176812259 GARS(ph)PEDGPSAR ddPTM_HeLa_A486_30min_R1 2 GARSPEDGPSAR 12 1 H0YEB0;Q8TDY4-2;Q8TDY4-3;Q8TDY4 H0YEB0 ASAP3 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3" 1 0 GARS(1)PEDGPSAR;GARS(0.988)PEDGPS(0.012)AR ; 82.464 0.0022911 903590000 172114 177225 174639 250740 227754 233966 276880 253040 168563 371600 TRUE FALSE FALSE 160049.6974 163181.0456 242263.8978 583735.3917 199186.9696 205101.6537 207601.6955 195428.3158 183174.1766 278548.9413 0.574583758 0.585825402 0.869735482 2.095629547 0.715087872 0.736321785 0.745297019 0.701594179 0.65760141 1 18.08757131 GARVS(ph)DFGGR ddPTM_HeLa_A485_30min_R1 3 GARVSDFGGR 10 1 P27694;I3L4R8 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 GARVS(1)DFGGR;GARVS(1)DFGGR;GARVS(1)DFGGR ;; 142.29 3.08E-06 894890000 158488 281583 311076 147007 381297 281125 346122 508203 272928 208484 TRUE FALSE FALSE 193743.1088 314511.6824 426155.9574 155037.6202 343333.7319 295844.2703 272170.2071 383565.4174 327702.1462 156512.7757 1.237874084 2.00949527 2.722818987 0.990574856 2.193646687 1.890224418 1.738964797 2.450697177 2.093772504 1 17.2559209 -4.258138321 23.82747424 1.94554723 1.237873587 0.117796146 0.529028358 329.0425389 2374846.343 0.124668783 0.86356956 5.52E-05 4.258138321 -0.707673643 GARVS(ph)DFGGR ddPTM_HeLa_A486_30min_R1 3 GARVSDFGGR 10 1 P27694;I3L4R8 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 GARVS(1)DFGGR;GARVS(1)DFGGR;GARVS(1)DFGGR ;; 133.18 2.99E-05 820840000 228514 272800 287826 113057 453099 226214 313211 368589 211431 261898 TRUE FALSE FALSE 212496.3486 251182.3345 399279.9354 263202.4096 396267.0984 198306.0167 234842.295 284669.3309 229758.0093 196317.0361 1.082414205 1.279472935 2.033852707 1.340700811 2.018505914 1.010131472 1.196240019 1.450049046 1.170341677 1 17.58282585 -6.298988691 24.99579581 1.195410997 1.55104857 0.283719233 0.304502525 848.1004184 564560.3435 0.108251628 0.095471174 5.02E-07 6.298988691 0.355637573 GAS(ph)PDMAPILEPVDR ddPTM_HeLa_A485_30min_R1 6 GASPDMAPILEPVDR 15 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR ;;;;; 284.51 1.14E-58 1423908000 1059487 1429371 1489123 1132478 1575312 1396968 1530287 1629971 1414849 1522863 TRUE FALSE FALSE 1295166.228 1596523.505 2040011.565 1194342.406 1418468.406 1470111.084 1203328.681 1230218.057 1698796.217 1143241.28 1.132889662 1.396488678 1.784410343 1.044698461 1.240742816 1.285914977 1.05255881 1.076079107 1.485947232 1 20.12469848 -5.305210209 24.9987048 1.175546668 1.433786642 0.273864701 0.200151259 605.5571895 345848.7267 0.056180306 0.083329356 4.95E-06 5.305210209 0.258239974 GAS(ph)PDMAPILEPVDR ddPTM_HeLa_A486_30min_R1 10 GASPDMAPILEPVDR 15 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR ;;;;;;;;; 318.35 3.90E-78 2210854000 818966 915406 844940 313710 1086723 838720 890702 927920 760235 967268 TRUE FALSE FALSE 761560.7125 842865.8947 1172123.396 730332.734 950416.0681 735247.2539 667838.9387 716652.8724 826132.7819 725057.7969 1.050344836 1.162480975 1.616593051 1.007275195 1.310814217 1.014053303 0.921083728 0.988407925 1.139402659 1 19.46773648 -6.276208858 22.5835046 1.00614582 1.234937433 0.30440253 0.163701144 282.4431406 431871.3184 0.057649536 0.051130848 5.29E-07 6.276208858 0.228791614 GAS(ph)PDMAPILEPVDRR ddPTM_HeLa_A485_30min_R1 2 GASPDMAPILEPVDRR 16 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 GAS(1)PDMAPILEPVDRR;GAS(1)PDMAPILEPVDRR ; 218.64 6.11E-34 545290000 287000 428980 442890 315550 441540 398650 474800 475300 357660 403160 TRUE FALSE FALSE 350842.1599 479145.4794 606733.4412 332787.6975 397578.7273 419522.6976 373355.1012 358731.9298 429439.0813 302659.6316 1.159197076 1.583116575 2.004672503 1.099544382 1.313616636 1.386120426 1.233580769 1.185265203 1.41888457 1 18.20733674 -5.301313981 24.99993793 1.251234122 1.582408349 0.336609437 0.223248755 602.2768346 377604.5495 0.062794243 0.093140525 5.00E-06 5.301313981 0.331174227 GAS(ph)PDMAPILEPVDRR ddPTM_HeLa_A486_30min_R1 1 GASPDMAPILEPVDRR 16 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 GAS(1)PDMAPILEPVDRR 197.38 2.76E-25 243210000 130080 147270 132220 44964 184000 117430 132400 132080 104510 129870 TRUE FALSE FALSE 120962.0637 135599.7889 183419.125 104678.4644 160921.0043 102942.6805 99272.11962 102008.2673 113569.0109 97349.70669 1.242551907 1.3929142 1.884126118 1.075282791 1.653019919 1.057452396 1.019747496 1.047853874 1.166608661 1 16.57088901 -6.282521733 23.53308601 1.058911682 1.449778201 0.469089657 0.208114361 346.32594 386582.9749 0.07122248 0.062895912 5.22E-07 6.282521733 0.390866519 GAS(ph)PLGPGSAAGSGAAASGGLGLGLGGR ddPTM_HeLa_A485_30min_R1 1 GASPLGPGSAAGSGAAASGGLGLGLGGR 28 0 B4E1M0;E9PPE2;A0A6I8PS01;Q6P1R3-3;Q6P1R3 B4E1M0 MSANTD2 Myb/SANT-like DNA-binding domain-containing protein 2 1 0 GAS(0.997)PLGPGS(0.003)AAGSGAAASGGLGLGLGGR 123.32 8.16E-06 210720000 16339 19249 20282 15898 25575 20334 30138 24755 17400 25519 TRUE FALSE FALSE 19973.55418 21500.00311 27785.1558 16766.46748 23028.6632 21398.6568 23698.7701 18683.79744 20892.0204 19157.58294 1.042592599 1.122271174 1.450347671 0.875186997 1.20206517 1.116981034 1.237043847 0.975269035 1.090535297 1 14.22562793 -7.272153995 24.89297737 1.024676625 1.150242983 0.147849618 0.140286619 1398.778861 3249725.117 0.073669526 0.03595029 5.34E-08 7.272153995 0.125566358 GAS(ph)PPISAIEEFSIIPEAPMR ddPTM_HeLa_A485_30min_R1 4 GASPPISAIEEFSIIPEAPMR 21 0 A0A2R8YFR7;A0A2R8YF49;Q12774;C9J591;A0A5F9ZGZ6;A0A5F9ZH52 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 GAS(0.963)PPIS(0.037)AIEEFSIIPEAPMR;GAS(1)PPISAIEEFSIIPEAPMR;GAS(0.999)PPIS(0.001)AIEEFSIIPEAPMR;GAS(1)PPISAIEEFSIIPEAPMR ;;; 329.08 3.56E-114 199613000 46620.4 65572.9 66256 48744.2 71507.3 55123.6 70514.7 77866.2 62333.8 71571.7 TRUE FALSE FALSE 56990.94714 73241.08025 90766.85154 51406.97222 64387.78213 58009.78646 55448.65829 58769.39236 74843.6219 53730.19237 1.060687569 1.36312708 1.689308144 0.956761365 1.198353836 1.079649707 1.031983245 1.09378712 1.3929528 1 15.71344538 -5.287534114 24.99712316 1.111009931 1.370249704 0.307169759 0.18122906 902.7445373 864770.878 0.051126775 0.075861243 5.16E-06 5.287534114 0.259239773 GAS(ph)PPISAIEEFSIIPEAPMR ddPTM_HeLa_A486_30min_R1 3 GASPPISAIEEFSIIPEAPMR 21 0 A0A2R8YFR7;A0A2R8YF49;Q12774;C9J591;A0A5F9ZGZ6;A0A5F9ZH52 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 GAS(1)PPISAIEEFSIIPEAPMR;GAS(1)PPISAIEEFSIIPEAPMR;GAS(1)PPISAIEEFSIIPEAPMR ;; 144.33 2.13E-09 119281000 21172.5 22713.8 22877.5 3479.9 27283.2 20143.8 23602.5 26295.1 21607.5 24812.4 TRUE FALSE FALSE 19688.41708 20913.87577 31736.28068 8101.383064 23861.08665 17658.66276 17696.90486 20308.27975 23480.4555 18599.21354 1.058561807 1.124449468 1.706323798 0.435576647 1.282908366 0.949430616 0.951486729 1.091889165 1.26244346 1 14.182954 -5.240595857 24.99957843 1.008204898 1.279245334 0.202734706 0.271441217 1452.325622 1741907.13 0.071431965 0.123555166 5.75E-06 5.240595857 0.271040436 GAS(ph)QAGMTGYGRPR ddPTM_HeLa_A485_30min_R1 2 GASQAGMTGYGRPR 14 1 Q01995;H0YCU9 Q01995 TAGLN Transgelin 1 0 GAS(1)QAGMTGYGRPR;GAS(1)QAGMTGYGRPR ; 95.409 0.00049608 436890000 187179 286170 219700 228648 273520 212718 321080 354300 209987 220447 TRUE FALSE FALSE 228816.3228 319635.0922 300976.1725 241138.4613 246287.3884 223855.5856 252478.635 267407.3695 252129.4648 165493.6199 1.382629269 1.931404318 1.818657255 1.457086149 1.48819869 1.352653871 1.525609477 1.615816789 1.523499606 1 17.33641607 -11.9803485 0.188083881 3.54E-13 1.704136209 0.503775595 0.170935944 50.5101405 0.97927 21.12955059 0.554710391 1.05E-12 11.9803485 1.704136209 GAS(ph)QAGMTGYGRPR ddPTM_HeLa_A486_30min_R1 2 GASQAGMTGYGRPR 14 1 Q01995;H0YCU9 Q01995 TAGLN Transgelin 1 0 GAS(1)QAGMTGYGRPR;GAS(1)QAGMTGYGRPR ; 149.52 2.99E-08 377980000 240360 261560 234660 105801 299680 221480 242780 314390 188987 194235 TRUE FALSE FALSE 223512.0052 240833.033 325526.6364 246310.0749 262091.34 194156.0494 182033.8761 242810.2601 205368.5453 145597.2917 1.535138481 1.654103796 2.235801453 1.691721542 1.800111368 1.333514155 1.250255921 1.667683905 1.410524488 1 17.15162399 -6.258804655 24.42610512 1.368992189 1.796236507 0.483565019 0.231297111 164.3854978 1523995.515 0.079346116 0.07588951 5.51E-07 6.258804655 0.427244318 GAS(ph)TVSSSSSTK ddPTM_HeLa_A486_30min_R1 1 GASTVSSSSSTK 12 0 Q5VTQ0-2;Q5VTQ0-3;Q5VTQ0-4;Q5VTQ0 Q5VTQ0-2 TTC39B Tetratricopeptide repeat protein 39B 1 0 GAS(0.955)T(0.044)VSSSSSTK 92.295 0.000938 0 165700 122340 95782 43884 140460 121900 114120 134680 96553 133730 TRUE FALSE FALSE 154085.2857 112645.3328 132871.3555 102164.1698 122842.1971 106861.2174 85565.96896 104016.304 104922.2918 100243.1376 1.537115551 1.12372114 1.325490789 1.019163728 1.22544246 1.066020278 0.853584306 1.037640147 1.04667805 1 16.61314395 -1 0.386226261 0.990701243 8.212845851 0.651954011 0.108436195 43.22957598 0.586315439 0.080134022 234.8668673 0.1 1 7.222144608 GAT(ph)T(ph)IEKY(ph)DLR ddPTM_HeLa_A485_30min_R1 2 GATTIEKYDLR 11 1 F5H1J3;Q9NR64 F5H1J3 KLHL1 Kelch-like protein 1 3 0 GAT(1)T(1)IEKY(1)DLR;GAT(1)T(1)IEKY(1)DLR ; 47.603 0.024961 1647960000 13434 8783 15663.3 14735 13542.8 0 15806.7 22124 0 8034.1 TRUE FALSE FALSE 16422.34695 9810.095448 21457.80647 15539.93574 12194.43128 0 12429.46942 16698.05431 0 6031.346727 2.722832511 1.626518238 3.557713965 2.576528335 2.021842191 0 2.06081162 2.768544915 0 1 12.55826446 -6.009124067 12.42724189 1.296603848 2.577345831 0.365121106 0.899295679 0.815451972 1105.189966 0.289838447 0.309397017 9.79E-07 6.009124067 1.280741983 GAT(ph)T(ph)IEKY(ph)DLR ddPTM_HeLa_A486_30min_R1 1 GATTIEKYDLR 11 1 F5H1J3;Q9NR64 F5H1J3 KLHL1 Kelch-like protein 1 3 0 GAT(1)T(1)IEKY(1)DLR 55.98 0.017027 18510000000 14902 0 23255 0 14200 10389 22850 16418 12931 13144 TRUE FALSE FALSE 13857.44675 0 32259.95879 0 12418.90359 9107.310808 17132.68832 12679.9798 14051.86949 9852.656847 1.406468019 0 3.274239557 0 1.26046241 0.924350756 1.738890188 1.286960461 1.426201045 1 13.2662971 -6.739986945 24.90417674 1.386926744 1.142330302 0.014646891 0.87012872 1335.07106 1549885.978 0.318974959 0.246837848 1.82E-07 6.739986945 -0.244596442 GATPGK(ac)ALVATPGK ddPTM_HeLa_A485_30min_R1 2 GATPGKALVATPGK 14 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; GATPGK(1)ALVATPGK;GATPGK(1)ALVATPGK 188.96 3.94E-10 88229000 29948 36671 37457 40514 63697 84066 138179 188082 167137 255370 FALSE TRUE FALSE 36609.82928 40959.35445 51313.90302 42727.17723 57355.10303 88467.56577 108655.9278 141954.5946 200679.8628 191710.9587 0.190963675 0.213651607 0.267662857 0.222872899 0.29917488 0.461463269 0.566769519 0.740461555 1.046783471 1 17.54857328 -7.096738664 0.870625178 1.04934526 0.217913071 0.974080374 0.04991743 0.084465668 0.117248305 0.043092027 0.020042329 8.00E-08 7.096738664 -0.831432189 down GATPGK(ac)ALVATPGK ddPTM_HeLa_A486_30min_R1 2 GATPGKALVATPGK 14 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; GATPGK(1)ALVATPGK;GATPGK(1)ALVATPGK 220.53 3.84E-21 136724000 168506 191103 162367 69339 220000 218382 220550 220032 180667 231660 FALSE TRUE FALSE 156694.5996 175959.3023 225239.8507 161424.6962 192405.5486 191440.2492 165366.0573 169935.5169 196327.361 173650.8281 0.902354462 1.01329377 1.297084806 0.929593587 1.108002482 1.102443629 0.952290634 0.978604702 1.130586955 1 17.40582977 -6.744490676 24.99876334 1.013587598 1.063922392 0.034102079 0.111066619 919.4880912 1356213.373 0.042769885 0.033046119 1.80E-07 6.744490676 0.050334794 GATPGK(ac)ALVATPGKK ddPTM_HeLa_A485_30min_R1 1 GATPGKALVATPGKK 15 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 GATPGK(1)ALVATPGKK 204.82 2.00E-15 106630000 65676 74598 58833 75975 120870 215780 373990 539340 383430 605360 FALSE TRUE FALSE 80285.39962 83321.58718 80597.77495 80125.32187 108835.7584 227077.9071 294083.9813 407066.0193 460380.884 454454.8928 0.176663077 0.18334402 0.177350439 0.176310836 0.239486383 0.499670948 0.647113687 0.895723703 1.013039779 1 18.79377758 -6.820875028 1.03362709 1.02487242 0.165738189 0.993029621 0.028594206 0.04059447 0.084532273 0.022216508 0.011987388 1.51E-07 6.820875028 -0.85913423 down GATPGK(ac)ALVATPGKK ddPTM_HeLa_A486_30min_R1 1 GATPGKALVATPGKK 15 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 GATPGK(1)ALVATPGKK 191.78 3.13E-11 191720000 407630 417610 278710 178180 480910 470770 535180 532970 377190 536250 FALSE TRUE FALSE 379057.242 384517.0627 386633.9761 414812.0447 420589.7835 412691.1838 401272.3034 411624.3657 409885.1329 401969.5096 0.942999986 0.95658266 0.961849013 1.031949028 1.046322603 1.026672854 0.998265525 1.024018877 1.019692099 1 18.61672655 -5.198301551 4.965675339 1.022338358 0.952504598 0.831611101 0.013872238 0.08595867 4.300596742 0.00406836 0.007150978 6.33E-06 5.198301551 -0.06983376 GAVDGGLSIPHSTK ddPTM_HeLa_A485_30min_R1 1 GAVDGGLSIPHSTK 14 0 P46777;A0A2R8Y6J3;Q5T7N0 P46777 RPL5 60S ribosomal protein L5 0 0 168.76 7.59E-08 58040000 93092 130180 127010 74749 161270 115890 148590 169130 122740 143600 FALSE FALSE TRUE 113799.9942 145403.4186 173996.2843 78832.3486 145213.3925 121957.8212 116842.5326 127650.6023 147372.7922 107803.1628 1.055627602 1.348786203 1.614018363 0.731261928 1.34702349 1.131300957 1.083850693 1.184108138 1.367054439 1 16.71803998 -5.234690091 24.99998293 1.136669961 1.340408163 0.182806551 0.21010995 1382.676648 1292253.317 0.055673287 0.096395969 5.83E-06 5.234690091 0.203738202 GAVYQAPS(ph)PPPAPVGLGSMAVFR ddPTM_HeLa_A485_30min_R1 1 GAVYQAPSPPPAPVGLGSMAVFR 23 0 Q13057-2;K7EPT0;K7ESK6 Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase 1 0 GAVYQAPS(1)PPPAPVGLGSMAVFR 181.87 3.22E-22 0 52368 70722 74784 60285 81247 66653 82112 85438 63389 78001 TRUE FALSE FALSE 64017.08093 78992.3227 102449.7136 63578.2169 73157.7634 70142.84801 64568.10041 64484.19654 76110.59086 58556.7862 1.093247855 1.348986647 1.749578832 1.085753181 1.249347311 1.197860275 1.102657857 1.101224994 1.299774045 1 15.83754876 GAVYQAPS(ph)PPPAPVGLGSMAVFR ddPTM_HeLa_A486_30min_R1 1 GAVYQAPSPPPAPVGLGSMAVFR 23 0 Q13057-2;K7EPT0;K7ESK6 Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase 1 0 GAVYQAPS(1)PPPAPVGLGSMAVFR 124.08 5.86E-09 0 76876 89448 82786 29300 100090 76333 84463 76420 76898 85425 TRUE FALSE FALSE 71487.38939 82359.81472 114842.9563 68211.88074 87535.7789 66915.81056 63329.46404 59020.83424 83563.58056 64034.02398 1.116396955 1.286188336 1.79346774 1.065244326 1.367019804 1.04500399 0.9889971 0.921710531 1.304987183 1 15.96655105 -6.26592035 22.51207427 1.043300189 1.334991789 0.306039455 0.205486239 120.0591813 603163.6856 0.071423103 0.065281217 5.42E-07 6.26592035 0.2916916 GAYIYNALIEFIR ddPTM_HeLa_A485_30min_R1 2 GAYIYNALIEFIR 13 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 252.82 3.59E-39 227968000 128271 183628 188883 108479 191781 136383 168448 168748 131549 162595 FALSE FALSE TRUE 156804.4414 205101.6972 258758.6818 114404.9331 172686.6103 143523.803 132457.7087 127362.2884 157949.6777 122063.0588 1.284618319 1.68029295 2.119877088 0.937260906 1.414732777 1.175816863 1.085158032 1.043413868 1.294000651 1 16.89726712 -5.275934048 24.99880138 1.148761282 1.693465835 0.55583316 0.228851411 579.3716541 999234.7742 0.064435272 0.096058742 5.30E-06 5.275934048 0.544704554 GAYIYNALIEFIR ddPTM_HeLa_A486_30min_R1 2 GAYIYNALIEFIR 13 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 256.91 2.57E-39 194999000 144425 138172 141730 49139 151573 106858 136971 137632 115571 132316 FALSE FALSE TRUE 134301.5533 127222.7475 196611.6517 114398.0753 132561.301 93674.94641 102699.4071 106296.1981 125588.7873 99183.21237 1.354075454 1.282704446 1.982307761 1.153401595 1.336529618 0.944463727 1.035451511 1.071715622 1.266230286 1 16.59780833 -5.682863268 2.190713704 1.082816906 1.507871345 0.425851593 0.214101743 0.293845371 2.886329901 0.070084098 0.095109458 2.08E-06 5.682863268 0.425054439 GCDS(ph)PDPDTSYVLTPHTEEK ddPTM_HeLa_A485_30min_R1 4 GCDSPDPDTSYVLTPHTEEK 20 0 Q02078-3;Q02078-5;Q02078 Q02078-3 MEF2A Myocyte-specific enhancer factor 2A 1 0 GCDS(0.81)PDPDT(0.19)SYVLTPHTEEK;GCDS(1)PDPDTSYVLTPHTEEK;GCDS(1)PDPDTSYVLTPHTEEK;GCDS(1)PDPDTSYVLTPHTEEK ;;; 316.28 5.27E-102 2323020000 2096020 2147440 2128870 2883810 2938530 2348350 3359310 3270710 2285700 3887160 TRUE FALSE FALSE 2562272.418 2398564.428 2916427.603 3041345.238 2645959.635 2471305.975 2641565.975 2468563.244 2744419.024 2918162.55 0.878043075 0.821943393 0.999405466 1.042212415 0.906721127 0.846870568 0.905215501 0.845930685 0.940461327 1 21.47662882 -5.982487219 24.91678115 0.895565082 0.937193446 0.022036436 0.070378154 733.5061886 1043609.394 0.023123348 0.026214233 1.04E-06 5.982487219 0.041628364 GCDS(ph)PDPDTSYVLTPHTEEK ddPTM_HeLa_A486_30min_R1 4 GCDSPDPDTSYVLTPHTEEK 20 0 Q02078-3;Q02078-5;Q02078 Q02078-3 MEF2A Myocyte-specific enhancer factor 2A 1 0 GCDS(0.999)PDPDT(0.001)SYVLTPHTEEK;GCDS(1)PDPDTSYVLTPHTEEK;GCDS(0.998)PDPDT(0.001)SYVLTPHTEEK;GCDS(1)PDPDTSYVLTPHTEEK ;;; 291.49 7.97E-87 2576020000 3226560 3891030 2471870 1343550 3959900 3931510 4496920 4411850 3101370 4518600 TRUE FALSE FALSE 3000394.806 3582690.612 3429044.263 3127852.299 3463212.417 3446480.269 3371743.052 3407368.065 3370199.249 3387113.149 0.885826565 1.057741639 1.012379602 0.923456691 1.022467294 1.017527351 0.995462184 1.005979994 0.995006396 1 21.69162475 GCGTVLLSGPR ddPTM_HeLa_A485_30min_R1 2 GCGTVLLSGPR 11 0 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;G3V203 F8VUA6 RPL18 60S ribosomal protein L18 0 0 ; ; 211.27 4.30E-15 128499000 68929 94816 109555 66775 121767 96568 109759 122072 98731 101242 FALSE FALSE TRUE 84262.01825 105903.9064 150083.9535 70422.74917 109643.4499 101624.1512 86308.093 92133.6506 118545.4061 76004.23262 1.108649023 1.393394851 1.974678887 0.926563518 1.442596631 1.337085418 1.13556956 1.212217365 1.55972111 1 16.21379214 -5.293582131 24.9997181 1.248697146 1.482357043 0.165549185 0.266804688 1274.260233 991080.6577 0.07449509 0.110503678 5.09E-06 5.293582131 0.233659897 GCHHGPAPPS(ph)RR ddPTM_HeLa_A485_30min_R1 2 GCHHGPAPPSRR 12 1 O15534 O15534 PER1 Period circadian protein homolog 1 1 0 GCHHGPAPPS(1)RR;GCHHGPAPPS(1)RR ; 113.53 0.00027077 124730000 100943 137038 140154 98749 161009 122608 184273 188663 104438 119705 TRUE FALSE FALSE 123397.4221 153063.402 192002.7969 104143.4078 144978.3786 129027.5653 144901.5682 142393.1034 125397.7486 89864.74651 1.373146054 1.703264161 2.136575291 1.158890576 1.613295361 1.435797354 1.612440627 1.584526847 1.395405357 1 16.45546764 -11.8231138 0.221869596 6.46E-12 1.662141727 0.344214891 0.239770806 58.88232991 1.39577742 28.28577107 0.485774222 1.50E-12 11.8231138 1.662141727 GCHHGPAPPS(ph)RR ddPTM_HeLa_A486_30min_R1 1 GCHHGPAPPSRR 12 1 O15534 O15534 PER1 Period circadian protein homolog 1 1 0 GCHHGPAPPS(1)RR 74.789 0.007778 50215000 34993 42565 41937 12830 51896 44997 47620 50296 30235 38770 TRUE FALSE FALSE 32540.1714 39191.99438 58176.12951 29868.88839 45386.71977 39445.72764 35704.97233 38844.69875 32855.79414 29061.73965 1.119691106 1.348577024 2.001811668 1.027773587 1.561734442 1.357307859 1.228590331 1.336626755 1.130551527 1 14.82683345 -7.732225466 0.677199812 0.998644055 1.426754365 0.209324298 0.251061702 1.082623475 1.129971078 0.242643577 0.105481342 1.85E-08 7.732225466 0.42811031 GCLTT(ph)PNSPSMHSR ddPTM_HeLa_A486_30min_R1 1 GCLTTPNSPSMHSR 14 0 O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 O75128-3 COBL Protein cordon-bleu 1 0 GCLT(0.023)T(0.728)PNS(0.124)PS(0.124)MHS(0.001)R 117.93 0.00062171 276670000 350290 430130 404500 49178 505070 326020 367320 353690 364840 296300 TRUE FALSE FALSE 325736.4799 396044.9323 561133.2329 114488.8693 441719.411 285798.9671 275412.6509 273162.508 396464.625 222104.5514 1.466590747 1.783146405 2.526437344 0.515472864 1.988790451 1.286776724 1.240013539 1.229882532 1.785036022 1 17.76087943 -5.249160283 24.99432612 1.328474122 1.911166881 0.291183466 0.450023605 1040.06984 2117077.915 0.117678063 0.201932457 5.63E-06 5.249160283 0.582692759 GCLTTPNS(ph)PSMHSR ddPTM_HeLa_A485_30min_R1 8 GCLTTPNSPSMHSR 14 0 O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 O75128-3 COBL Protein cordon-bleu 1 0 GCLT(0.002)T(0.175)PNS(0.407)PS(0.407)MHS(0.009)R;GCLTTPNS(0.998)PS(0.002)MHSR;GCLTTPNS(0.992)PS(0.008)MHSR;GCLTTPNS(0.997)PS(0.003)MHSR;GCLT(0.002)T(0.042)PNS(0.594)PS(0.319)MHS(0.043)R;GCLTTPNS(0.996)PS(0.004)MHSR;GCLTTPNS(0.97)PS(0.029)MHSR;GCLTTPNS(0.993)PS(0.007)MHSR ;;;;;;; 268.18 2.68E-42 5057630000 1927034 3293445 3373817 1325810 3478821 2591985 2724883 3166829 3020526 2266025 TRUE FALSE FALSE 2355696.065 3678584.744 4621932.305 1398235.643 3132457.366 2727697.327 2142689.487 2390159.222 3626717.862 1701146.671 1.384769524 2.162414804 2.716951092 0.821937148 1.841379947 1.603446295 1.259555995 1.405028305 2.131925439 1 20.6980761 -5.259914642 24.99815095 1.470801261 2.095482058 0.287763222 0.466846236 181.9925209 2983751.643 0.1267492 0.205357108 5.50E-06 5.259914642 0.624680797 GCLTTPNS(ph)PSMHSR ddPTM_HeLa_A486_30min_R1 8 GCLTTPNSPSMHSR 14 0 O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 O75128-3 COBL Protein cordon-bleu 1 0 GCLTTPNS(0.988)PS(0.012)MHSR;GCLTTPNS(0.941)PS(0.059)MHSR;GCLTTPNS(0.848)PS(0.152)MHSR;GCLTTPNS(0.941)PS(0.059)MHSR;GCLTTPNS(0.973)PS(0.027)MHSR;GCLTTPNS(0.951)PS(0.048)MHS(0.001)R;GCLTTPNS(0.994)PS(0.006)MHSR;GCLTTPNS(0.965)PS(0.035)MHSR ;;;;;;; 179.46 2.00E-17 5082700000 3895610 4379600 4340500 479741 5153400 3213710 3487940 3507000 3785540 2490410 TRUE FALSE FALSE 3622547.856 4032544.546 6021257.843 1116861.293 4507012.518 2817235.135 2615220.52 2708532.657 4113673.655 1866795.126 1.940517095 2.160143065 3.225451876 0.598277378 2.414304845 1.509129253 1.400914585 1.45089979 2.203602097 1 20.83213218 -5.255129077 24.99918733 1.562776348 2.413847828 0.347956689 0.580640822 613.9981345 2432437.327 0.152715734 0.256384688 5.56E-06 5.255129077 0.85107148 GCRLS(ph)PR ddPTM_HeLa_A485_30min_R1 11 GCRLSPR 7 1 B4E1E0;P17812-2;P17812;A0A3B3IRI2 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR ;;;;;;;;;; 78.264 0.0068824 97963460000 4907252 7457541 7621175 4735066 7865354 7044107 8067815 9303486 6471579 6301355 TRUE FALSE FALSE 5998853.278 8329635.548 10440564.78 4993730.666 7082251.739 7412925.55 6344060.417 7021791.471 7770365.544 4730543.166 1.268110884 1.760820112 2.207054118 1.055635789 1.497132885 1.567034755 1.341084986 1.484352055 1.642594787 1 22.17357441 -12.07850422 0.212181742 8.68E-14 1.631892528 0.222965713 0.294532274 92.12713331 1.90745653 42.48970279 0.669672825 8.35E-13 12.07850422 1.631892528 GCRLS(ph)PR ddPTM_HeLa_A486_30min_R1 10 GCRLSPR 7 1 B4E1E0;P17812-2;P17812;A0A3B3IRI2 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR;GCRLS(1)PR ;;;;;;;;; 74.267 0.0085152 81690050000 6341586 7099479 7269524 2300348 8660700 5963978 7092270 7339190 5940534 6721682 TRUE FALSE FALSE 5897073.569 6536890.428 10084478.38 5355326.397 7574394.248 5228203.032 5317709.032 5668216.65 6455464.27 5038529.076 1.17039586 1.29738071 2.001472697 1.062874961 1.503294738 1.037644708 1.055409019 1.124974485 1.281220009 1 22.26457119 -6.263821554 24.93351674 1.104883004 1.414888073 0.282295148 0.244716664 286.8629351 3002491.783 0.084342883 0.07791477 5.45E-07 6.263821554 0.310005069 GCTSSSSLS(ph)PPRGDR ddPTM_HeLa_A485_30min_R1 2 GCTSSSSLSPPRGDR 15 1 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 GCTSSSSLS(1)PPRGDR;GCT(0.033)S(0.03)S(0.027)S(0.143)S(0.03)LS(0.737)PPRGDR ; 137.81 2.98E-06 760730000 200464 339300 324990 195388 286710 283840 288960 358880 254067 236935 TRUE FALSE FALSE 245056.5252 378978.1835 445217.325 206061.5517 258164.1457 298701.4235 227221.3354 270864.1173 305055.9165 177871.465 1.377716911 2.130629461 2.503028381 1.158485717 1.451408441 1.679310527 1.277446809 1.522808154 1.715035723 1 17.44047556 -5.274757994 24.99648578 1.431019171 2.016475407 0.409289335 0.330540324 758.7972545 1424115.255 0.09257266 0.138198609 5.31E-06 5.274757994 0.585456236 GCTSSSSLS(ph)PPRGDR ddPTM_HeLa_A486_30min_R1 3 GCTSSSSLSPPRGDR 15 1 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 GCT(0.025)S(0.025)S(0.07)S(0.07)S(0.025)LS(0.786)PPRGDR;GCTSSSSLS(1)PPRGDR;GCT(0.004)S(0.004)S(0.013)S(0.166)S(0.045)LS(0.768)PPRGDR ;; 147.49 3.35E-08 587510000 479930 610350 559620 212227 743520 545040 607790 644590 503240 584840 TRUE FALSE FALSE 446289.3854 561983.6431 776319.8511 494075.1814 650260.7886 477798.5064 455714.5135 497830.9283 546861.2484 438392.2573 1.01801384 1.281919636 1.770833855 1.127016212 1.483285295 1.089888104 1.039513143 1.135583305 1.247424514 1 18.74186279 -6.281353016 24.22381991 1.107020192 1.345720901 0.255778727 0.198940324 806.0895424 980558.7943 0.07053939 0.062299708 5.23E-07 6.281353016 0.238700709 GCWEVS(ph)PTER ddPTM_HeLa_A485_30min_R1 1 GCWEVSPTER 10 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 GCWEVS(0.987)PT(0.013)ER 84.507 0.0030659 0 188380 239610 198130 177040 276580 234650 247500 390200 200970 216990 TRUE FALSE FALSE 230284.4811 267630.3052 271426.5319 186711.2469 249042.7241 246935.9112 194619.6031 294502.8382 241302.8356 162898.3864 1.413669504 1.642927908 1.66623217 1.146182298 1.528822535 1.51588924 1.194730085 1.807892912 1.481308937 1 17.31361279 -11.10531898 2.342683205 0.1331652 1.491048354 0.367959149 0.192096502 2761988.386 1053785.828 12706472.21 0.048307127 7.85E-12 11.10531898 1.357883154 GDAASS(ph)PAPAASVGSSQGGAR ddPTM_HeLa_A485_30min_R1 5 GDAASSPAPAASVGSSQGGAR 21 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;F8WCC1 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 GDAAS(0.001)S(0.999)PAPAASVGSSQGGAR;GDAAS(0.034)S(0.966)PAPAASVGSSQGGAR;GDAAS(0.001)S(0.999)PAPAASVGSSQGGAR;GDAAS(0.001)S(0.998)PAPAASVGSSQGGAR;GDAAS(0.003)S(0.997)PAPAASVGSSQGGAR ;;;; 406.56 3.67E-175 3536891000 1184146 1734366 1912871 1171570 1968369 1688449 1835427 1998427 1615249 1682472 TRUE FALSE FALSE 1447555.192 1937185.017 2620521.584 1235569.903 1772391.271 1776853.579 1443273.027 1508309.645 1939414.658 1263062.694 1.14606757 1.533720397 2.074735955 0.978233233 1.403248849 1.406781775 1.142677267 1.19416847 1.535485663 1 20.26849482 -5.28971423 24.99963097 1.255360957 1.579729601 0.259601524 0.267755719 1019.755775 901630.0516 0.075215849 0.111588001 5.13E-06 5.28971423 0.324368644 GDAASS(ph)PAPAASVGSSQGGAR ddPTM_HeLa_A486_30min_R1 3 GDAASSPAPAASVGSSQGGAR 21 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;F8WCC1 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 GDAAS(0.002)S(0.998)PAPAASVGSSQGGAR;GDAAS(0.003)S(0.997)PAPAASVGSSQGGAR;GDAAS(0.003)S(0.997)PAPAASVGSSQGGAR ;; 438.3 5.04E-215 2318200000 1382490 1582710 1530130 386270 1821000 1343610 1495920 1620480 1394450 1504560 TRUE FALSE FALSE 1285584.59 1457290.295 2122637.314 899256.081 1592593.2 1177849.059 1121624.994 1251532.079 1515322.049 1127808.383 1.139896289 1.292143521 1.882090386 0.797348286 1.412113284 1.044369839 0.994517341 1.109702763 1.343598852 1 20.10509054 -5.278891512 24.99757016 1.111068958 1.423453509 0.290581456 0.241139941 1074.758054 1539427.489 0.066907762 0.099497706 5.26E-06 5.278891512 0.312384551 GDAVANHVPAGWPDQS(ph)LAESDSEDPSGKPR ddPTM_HeLa_A485_30min_R1 1 GDAVANHVPAGWPDQSLAESDSEDPSGKPR 30 1 A0A6I8PL36;A0A6I8PRU0;Q9NYQ6 A0A6I8PL36 CELSR1 Cadherin EGF LAG seven-pass G-type receptor 1 1 0 GDAVANHVPAGWPDQS(0.699)LAES(0.231)DS(0.038)EDPS(0.031)GKPR 65.377 0.0040337 286950000 81689 65511 43745 107380 56336 76632 95835 92374 58205 187410 TRUE FALSE FALSE 99860.43623 73171.94158 59928.09588 113245.8975 50726.99003 80644.33302 75359.06935 69719.13166 69886.20961 140692.136 0.7097798 0.520085512 0.425951994 0.804919882 0.36055313 0.573197162 0.535630999 0.495543913 0.496731456 1 17.10218217 -10.5157569 3.017056435 1.015753549 0.543619533 0.553004928 0.122167232 56294269.79 65284028.03 7322929.399 0.028525087 3.05E-11 10.5157569 -0.472134016 GDAVANHVPAGWPDQS(ph)LAESDSEDPSGKPR ddPTM_HeLa_A486_30min_R1 2 GDAVANHVPAGWPDQSLAESDSEDPSGKPR 30 1 A0A6I8PL36;A0A6I8PRU0;Q9NYQ6 A0A6I8PL36 CELSR1 Cadherin EGF LAG seven-pass G-type receptor 1 1 0 GDAVANHVPAGWPDQS(0.462)LAES(0.462)DS(0.066)EDPS(0.01)GKPR;GDAVANHVPAGWPDQS(0.429)LAES(0.429)DS(0.138)EDPS(0.004)GKPR ; 73.24 0.0015397 332780000 40502 45028 34697 15399.7 60236 54437 46369 46006 50700 87809 TRUE FALSE FALSE 37663.01895 41459.81729 48132.60762 35851.27986 52680.6392 47721.11641 34766.98576 35531.4381 55094.71682 65821.05486 0.572203211 0.629886856 0.731264604 0.54467799 0.800361515 0.725012939 0.528204627 0.539818728 0.837037889 1 16.00626153 -7.97940772 4.806046951 0.999202349 0.640071753 0.645385146 0.088358691 0.099784253 6.307518516 0.088291089 0.023049379 1.05E-08 7.97940772 -0.359130596 GDDALEK(ac)R ddPTM_HeLa_A486_30min_R1 1 GDDALEKR 8 1 Q9Y617 Q9Y617 PSAT1 Phosphoserine aminotransferase 0 1 GDDALEK(1)R 101.64 0.0010759 0 11935 14659 22565 6108.3 20941 21279 15078 15687 18043 16847 FALSE TRUE FALSE 11098.41813 13497.36745 31302.77231 14220.4311 18314.38451 18653.81333 11305.32492 12115.41254 19606.98177 12628.40154 0.878845838 1.068810443 2.478759659 1.126067384 1.450253577 1.477131786 0.89523008 0.959378153 1.55260994 1 13.62438442 -6.743275137 24.88631613 1.098419368 1.434704485 0.107677522 0.436669342 525.3639838 719786.2556 0.170878243 0.132089566 1.81E-07 6.743275137 0.336285117 GDDDEES(ph)DEEAVKK ddPTM_HeLa_A485_30min_R1 2 GDDDEESDEEAVKK 14 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK ; 157.98 6.75E-09 1385170000 1408900 769060 466500 2702850 1108220 962780 1743220 1191780 850520 3779270 TRUE FALSE FALSE 1722304.944 858994.8771 639077.7627 2850499.852 997881.7256 1013189.672 1370766.806 899494.0864 1021211.563 2837167.541 0.607050842 0.302764946 0.225252035 1.004699162 0.351717588 0.357113092 0.483146232 0.317039467 0.359940521 1 21.43601992 -10.59307137 3.286126891 1.025614458 0.443173652 0.381038728 0.212032331 313321705.4 366989937.9 69526690.99 0.051878438 2.55E-11 10.59307137 -0.582440806 GDDDEES(ph)DEEAVKK ddPTM_HeLa_A486_30min_R1 2 GDDDEESDEEAVKK 14 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK ; 182.17 1.36E-17 2161980000 2234740 2284930 916820 1297670 1708330 2810140 3474640 2923880 1936890 4289610 TRUE FALSE FALSE 2078096.266 2103863.825 1271837.257 3021041.341 1494055.322 2463453.498 2605248.321 2258176.352 2104781.185 3215463.735 0.646281979 0.654295616 0.395537739 0.939535193 0.46464692 0.766126973 0.810224756 0.702286369 0.654580912 1 21.61659539 -14 0.13967979 2.129359241 0.553204121 0.334298572 0.145706618 158.8127594 1.358693703 49.91134776 0.870768722 1.00E-14 14 -1.57615512 GDDT(ph)DTRDDISILATGCK ddPTM_HeLa_A486_30min_R1 1 GDDTDTRDDISILATGCK 18 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GDDT(1)DTRDDISILATGCK 190.88 4.57E-18 92650000 115120 153890 77731 46895 122110 163290 155790 152960 125680 139950 TRUE FALSE FALSE 107050.6825 141695.1959 107830.5249 109173.9299 106793.8252 143144.94 116809.6942 118134.3471 136574.0436 104905.6091 1.020447652 1.350692276 1.027881406 1.040687251 1.017999191 1.364511786 1.113474248 1.126101341 1.301875513 1 16.67873229 GDEASEEGQNGSS(ph)PK ddPTM_HeLa_A485_30min_R1 6 GDEASEEGQNGSSPK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 GDEASEEGQNGS(0.001)S(0.999)PK;GDEASEEGQNGSS(1)PK;GDEASEEGQNGS(0.02)S(0.98)PK;GDEASEEGQNGSS(1)PK;GDEASEEGQNGS(0.105)S(0.895)PK;GDEASEEGQNGS(0.032)S(0.968)PK ;;;;; 354.93 2.93E-104 6748610000 4895630 3741980 3219124 9141810 5356200 3869920 6492360 4641830 3689070 11883960 TRUE FALSE FALSE 5984646.004 4179572.01 4410011.927 9641203.932 4822917.921 4072543.027 5105214.248 3503413.914 4429432.511 8921507.48 0.670811073 0.468482711 0.494312417 1.080669826 0.540594505 0.456485974 0.572236728 0.392693042 0.496489245 1 23.08885607 -10.05974199 4.792046774 1.000012552 0.574229464 0.325416367 0.183678192 258217481.6 10.74159834 37856.30522 0.0463836 8.71E-11 10.05974199 -0.425783088 GDEASEEGQNGSS(ph)PK ddPTM_HeLa_A486_30min_R1 4 GDEASEEGQNGSSPK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 GDEASEEGQNGS(0.002)S(0.998)PK;GDEASEEGQNGSS(1)PK;GDEASEEGQNGS(0.003)S(0.997)PK;GDEASEEGQNGSS(1)PK ;;; 356.58 2.36E-104 8641960000 5558620 6189490 3190670 4275640 5037460 7115320 8909460 7772160 5011070 11088830 TRUE FALSE FALSE 5168989.443 5699012.271 4426182.873 9953905.999 4405614.794 6237504.162 6680218.873 6002608.833 5445433.582 8312114.792 0.621862134 0.685627234 0.532497804 1.19751787 0.530023334 0.750411215 0.803672596 0.722151821 0.655120113 1 22.98678415 -11.30739031 2.149951958 2.250504754 0.727016299 0.176896515 0.179555592 17512432.31 2381711.603 106308092.8 0.043289326 4.93E-12 11.30739031 -1.523488455 GDFCIQVGR ddPTM_HeLa_A485_30min_R1 2 GDFCIQVGR 9 0 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;O60361 Q32Q12 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A;Putative nucleoside diphosphate kinase 0 0 ; ; 210.05 2.79E-12 945080000 425980 569710 671740 445620 697460 648060 731380 782470 530620 601440 FALSE FALSE TRUE 520737.7814 636332.6287 920244.5794 469963.0922 628018.4335 681991.4195 575114.6882 590568.0056 637110.5669 451512.0767 1.153319719 1.409336896 2.038139458 1.040864944 1.390922781 1.510461081 1.273752615 1.307978316 1.411059858 1 18.78440505 -11.1018029 0.253593277 0.521139665 1.455004429 0.181907073 0.251376222 57.93626541 2.105734331 16.44825011 0.386207428 7.91E-12 11.1018029 0.933864764 GDFCIQVGR ddPTM_HeLa_A486_30min_R1 3 GDFCIQVGR 9 0 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;O60361 Q32Q12 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A;Putative nucleoside diphosphate kinase 0 0 ;; ;; 185.05 4.46E-08 518708000 358762 522839 508600 167280 632650 480757 517170 545739 462173 513760 FALSE FALSE TRUE 333614.6364 481407.3335 705543.5408 389436.2939 553297.1378 421446.0893 387768.5959 421486.1431 502234.5278 385111.152 0.866281422 1.250047762 1.8320517 1.011230892 1.436720632 1.094349221 1.00690046 1.094453227 1.304128757 1 18.55491538 -6.294662741 23.25647731 1.100052933 1.293462647 0.111093368 0.251996678 631.6257972 442137.4128 0.089647767 0.079069599 5.07E-07 6.294662741 0.193409714 GDFGPTLGLLRPAPEPEAEGSAVK(ac)R ddPTM_HeLa_A486_30min_R1 1 GDFGPTLGLLRPAPEPEAEGSAVKR 25 2 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 0 1 GDFGPTLGLLRPAPEPEAEGSAVK(1)R 224.83 3.61E-42 41583000 14101 27284 27656 10402 24920 23287 18628 31796 33609 33235 FALSE TRUE FALSE 13112.59272 25121.91647 38365.14385 24216.38169 21794.30123 20414.0867 13967.07737 24556.7449 36522.25518 24912.73968 0.526340856 1.008396379 1.539980923 0.972048117 0.874825552 0.819423595 0.56063996 0.985710332 1.466007178 1 14.60459606 -7.554218705 17.54250218 1.230647036 0.916643174 0.175861469 0.282649131 15.63802072 8746.692951 0.201827365 0.076304803 2.79E-08 7.554218705 -0.314003862 GDFHSPIVLGRPPNT(ph)EDRESPSVKR ddPTM_HeLa_A486_30min_R1 1 GDFHSPIVLGRPPNTEDRESPSVKR 25 3 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GDFHSPIVLGRPPNT(0.949)EDRES(0.047)PS(0.004)VKR 158.06 2.42E-10 1274200000 257970 244070 141390 100300 247240 243900 286990 263970 193540 312520 TRUE FALSE FALSE 239887.6352 224729.0043 196139.9946 233503.4689 216228.8538 213810.0978 215182.0665 203869.7934 210316.203 234262.9578 1.024010101 0.959302343 0.837264228 0.996757964 0.923017688 0.912692727 0.91854926 0.870260477 0.897778313 1 17.83776932 -5.985116806 24.86278636 0.912353461 0.948021634 0.071629075 0.054998734 610.8946938 1020510.305 0.017114894 0.01939963 1.03E-06 5.985116806 0.035668173 GDFHSPIVLGRPPNTEDRES(ph)PSVK ddPTM_HeLa_A486_30min_R1 1 GDFHSPIVLGRPPNTEDRESPSVK 24 2 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GDFHSPIVLGRPPNT(0.074)EDRES(0.878)PS(0.048)VK 85.745 0.0013602 168260000 361550 330710 169440 172230 294030 405370 464270 395160 278930 505150 TRUE FALSE FALSE 336207.212 304503.3352 235051.7058 400960.144 257150.0157 355359.5709 348104.7355 305190.6943 303107.877 378657.152 0.887893468 0.804166338 0.620750736 1.058900226 0.679110415 0.938473152 0.919313774 0.805981592 0.800481056 1 18.53053265 -5.249546096 24.98424856 0.872902489 0.774259827 0.157808353 0.119102125 1610.794715 3383795.952 0.031252423 0.053576463 5.63E-06 5.249546096 -0.098642662 GDFHSPIVLGRPPNTEDRES(ph)PSVKR ddPTM_HeLa_A485_30min_R1 2 GDFHSPIVLGRPPNTEDRESPSVKR 25 3 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GDFHSPIVLGRPPNT(0.126)EDRES(0.832)PS(0.042)VKR;GDFHSPIVLGRPPNT(0.003)EDRES(0.967)PS(0.029)VKR ; 184.75 2.44E-20 2453400000 576010 669730 542190 675700 749900 726800 829940 890370 554090 897130 TRUE FALSE FALSE 704141.4373 748049.0976 742768.6434 712611.78 675237.3229 764854.1242 652616.539 672005.3615 665290.7806 673492.0015 1.04550824 1.110702274 1.102861863 1.058084994 1.002591451 1.135654354 0.969004142 0.997792639 0.987822839 1 19.36130129 -6.779774476 24.98717129 0.988470936 1.074565923 0.589116854 0.035684438 180.5414112 246040.4316 0.015026822 0.010153096 1.66E-07 6.779774476 0.086094987 GDFHSPIVLGRPPNTEDRES(ph)PSVKR ddPTM_HeLa_A486_30min_R1 1 GDFHSPIVLGRPPNTEDRESPSVKR 25 3 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GDFHSPIVLGRPPNT(0.013)EDRES(0.899)PS(0.088)VKR 187.45 1.90E-20 997240000 447350 398670 241230 164160 393600 409230 514000 458780 262930 481150 TRUE FALSE FALSE 415993.0751 367077.9373 334640.7164 382172.7762 344231.0178 358743.3633 385391.7635 354325.8091 285720.9841 360666.9082 1.153399621 1.017775484 0.927838703 1.05962806 0.95442917 0.9946667 1.068553157 0.982418406 0.792201828 1 18.46030753 -4.303763619 3.339694379 0.978206726 1.169104081 0.353522244 0.073102556 0.317900587 5.957162105 0.018564241 0.145736891 4.97E-05 4.303763619 0.190897355 GDFHSPIVLGRPPNTEDRESPS(ph)VKR ddPTM_HeLa_A486_30min_R1 1 GDFHSPIVLGRPPNTEDRESPSVKR 25 3 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GDFHSPIVLGRPPNT(0.222)EDRES(0.324)PS(0.455)VKR 121.26 5.13E-05 220860000 92170 92091 51472 30375 79459 77415 91475 88466 54545 103570 TRUE FALSE FALSE 85709.35897 84793.37377 71403.33687 70714.53507 69492.51129 67864.3244 68586.98748 68324.223 59273.00452 77635.39787 1.103998451 1.0921999 0.919726553 0.910854288 0.895113739 0.874141516 0.883449939 0.880065342 0.763479111 1 16.24442698 -4.800196796 2.939042749 0.882449946 1.108761978 0.703929254 0.054038412 0.127217968 2.199200327 0.014145758 0.039779249 1.58E-05 4.800196796 0.226312032 GDFLNYALSLMR ddPTM_HeLa_A485_30min_R1 1 GDFLNYALSLMR 12 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 0 0 137.16 0.00081521 3127700 2307.7 2717 4030.4 1851.8 3544.8 3365.2 3219.1 3219.9 2262.1 2922.7 FALSE FALSE TRUE 2821.039904 3034.729515 5521.412679 1952.959145 3191.867265 3541.396668 2531.312987 2430.214476 2716.082721 2194.124678 1.285724522 1.383116258 2.516453478 0.890085766 1.45473377 1.614036205 1.153677825 1.107600904 1.237888962 1 11.09942979 -6.793240353 0.69237638 1.043238863 1.59233024 0.185308896 0.392228441 1.264283196 1.199718183 0.3451613 0.222523666 1.61E-07 6.793240353 0.549091378 GDFLNYALSLMR ddPTM_HeLa_A486_30min_R1 2 GDFLNYALSLMR 12 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 0 0 ; ; 134.75 0.00099481 5161300 4175.3 5420.2 4931 1395.34 5834.7 3897.2 4663.4 4594.1 4042.2 4301.3 FALSE FALSE TRUE 3882.633031 4990.683612 6840.415257 3248.422037 5102.85752 3416.403088 3496.567996 3548.123718 4392.581151 3224.226483 1.204206048 1.547870051 2.121567853 1.007504297 1.582661003 1.059603941 1.08446724 1.100457346 1.362367431 1 11.65473737 -5.853119033 1.42605713 1.135018594 1.570643415 0.269686116 0.289613531 0.537805505 2.278828869 0.113205084 0.144433067 1.40E-06 5.853119033 0.435624821 GDGRPET(ph)PK ddPTM_HeLa_A485_30min_R1 5 GDGRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK ;;;; 91.858 0.0038655 5033450000 2635760 2503210 2006600 4961680 3189000 2369780 3944200 3277250 2281260 5825180 TRUE FALSE FALSE 3222075.719 2795938.634 2748924.842 5232724.015 2871491.963 2493858.016 3101489.449 2473499.299 2739087.957 4373069.83 0.736799512 0.639353759 0.628603006 1.196579112 0.656630713 0.570276285 0.709224771 0.56562081 0.626353583 1 22.06021496 GDGRPET(ph)PK ddPTM_HeLa_A486_30min_R1 7 GDGRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK;GDGRPET(1)PK ;;;;;; 93.345 0.004506 6107300000 3483830 3466800 1908970 2521317 2980100 3958090 4900240 4429190 2688432 6171690 TRUE FALSE FALSE 3239631.508 3192078.142 2648174.308 5869753.396 2606308.07 3469781.099 3674148.123 3420760.126 2921467.45 4626258.653 0.700270294 0.689991283 0.572422449 1.268790579 0.563372752 0.750018829 0.794194272 0.739422584 0.631496782 1 22.1414145 -11.0772366 2.429696588 1.384836052 0.750239772 0.139667882 0.189131968 30449084.25 7788875.181 65025284.94 0.046518947 8.37E-12 11.0772366 -0.63459628 GDHNRT(ph)LDR ddPTM_HeLa_A485_30min_R1 2 GDHNRTLDR 9 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;H0YC95 O60716-5 CTNND1 Catenin delta-1 1 0 GDHNRT(1)LDR;GDHNRT(1)LDR ; 100.22 0.0022446 7678400000 9285700 13320300 8497000 8573600 8854500 13487100 12981300 17669700 10536800 13407600 TRUE FALSE FALSE 11351271.93 14877993.21 11640393.89 9041954.058 7972914.89 14193263.7 10207739.21 13336178.37 12651439.11 10065332.07 1.127759308 1.478142312 1.156483841 0.898326453 0.792116429 1.410113805 1.01414828 1.324961589 1.256932114 1 23.26289143 -1.000004882 0.008847944 5.22E-09 2.433778044 0.018678171 0.210171222 125718.4281 86.21164292 10395.57128 13506.85374 0.099998876 1.000004882 2.433778039 GDHNRT(ph)LDR ddPTM_HeLa_A486_30min_R1 2 GDHNRTLDR 9 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;H0YC95 O60716-5 CTNND1 Catenin delta-1 1 0 GDHNRT(1)LDR;GDHNRT(1)LDR ; 78.903 0.010603 2887000000 4335100 3072400 6322400 2232400 5288400 6330600 5491300 4382600 5759500 5465400 TRUE FALSE FALSE 4031231.876 2828931.835 8770602.6 5197140.019 4625079.56 5549594.937 4117318.659 3384777.651 6258738.097 4096828.266 0.983988494 0.690517554 2.140827496 1.268576489 1.128941527 1.354607657 1.005001526 0.826194664 1.527703309 1 21.96607599 -6.764085152 24.98870286 1.075241089 1.269601853 0.044749603 0.384746822 249.8932701 2360132.115 0.16038897 0.113697182 1.72E-07 6.764085152 0.194360763 GDIFDGTSFSHLPPSSSDGQGVPLS(ph)PVSK ddPTM_HeLa_A485_30min_R1 2 GDIFDGTSFSHLPPSSSDGQGVPLSPVSK 29 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 GDIFDGTSFSHLPPSSSDGQGVPLS(0.999)PVS(0.001)K;GDIFDGTSFSHLPPS(0.001)S(0.001)S(0.001)DGQGVPLS(0.98)PVS(0.018)K ; 151.5 1.42E-09 520490000 323432 399834 368364 254313 485992 396160 495029 516489 379630 448499 TRUE FALSE FALSE 395378.3326 446591.1082 504637.1725 268205.4752 437604.9301 416902.325 389262.0101 389819.2629 455818.2588 336696.4533 1.174287192 1.32639089 1.498789689 0.796579449 1.299701633 1.238214186 1.156121504 1.157776564 1.353795843 1 18.361089 -10.73737805 2.821698901 0.960077443 1.219957199 0.127983434 0.17405656 42071152.8 31888003.61 11674473.13 0.042304105 1.83E-11 10.73737805 0.259879756 GDIFDGTSFSHLPPSSSDGQGVPLS(ph)PVSK ddPTM_HeLa_A486_30min_R1 1 GDIFDGTSFSHLPPSSSDGQGVPLSPVSK 29 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 GDIFDGTSFSHLPPSSSDGQGVPLS(0.995)PVS(0.005)K 111.1 0.00014582 141230000 122070 127400 115610 8027 155430 107160 133680 137480 131480 86223 TRUE FALSE FALSE 113513.5234 117304.36 160377.2881 18687.26166 135934.5201 93939.68872 100231.8501 106178.8052 142876.7923 64632.19958 1.756299865 1.814952311 2.481383725 0.28913238 2.103201205 1.453450282 1.550803635 1.642815901 2.21061318 1 15.97996547 GDIS(ph)TKFLSDVYPDGFKGHMLTKS(ph)EK ddPTM_HeLa_A486_30min_R1 1 GDISTKFLSDVYPDGFKGHMLTKSEK 26 3 H0Y5U0;Q5JTW6;A0A1B0GU58;P05165-3;P05165-2;P05165 H0Y5U0 PCCA "Propionyl-CoA carboxylase alpha chain, mitochondrial" 2 0 GDIS(0.49)T(0.493)KFLS(0.021)DVY(0.01)PDGFKGHMLT(0.092)KS(0.894)EK 40.669 0.036453 828560000 437760 288910 64846 154620 158880 336790 474340 392630 188960 689440 TRUE FALSE FALSE 407075.2846 266015.7194 89956.10784 359963.1741 138951.7889 295240.274 355655.1149 303236.7201 205339.2049 516799.7365 0.787684776 0.514736562 0.174063765 0.696523525 0.268869698 0.571285651 0.688187493 0.586758658 0.397328386 1 18.97924581 -11.00055095 2.641128467 1.485210062 0.516374732 0.380733971 0.183347135 32891944.28 10413415.82 97054055 0.044680366 9.99E-12 11.00055095 -0.96883533 GDKSELNEIKENQRS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 GDKSELNEIKENQRSPVR 18 3 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR ;;; 237.01 3.14E-45 6795590000 1910460 1408900 1410190 2762640 3067120 2291360 3356820 3079640 2051640 4215320 TRUE FALSE FALSE 2335435.236 1573658.599 1931877.964 2913556.028 2761746.763 2411332.066 2639607.984 2324353.461 2463385.329 3164518.301 0.738006551 0.497282193 0.610480895 0.920694953 0.872722639 0.761990242 0.834126313 0.734504667 0.778439274 1 21.59355448 -2.185030101 0.13697383 0.987867168 9.08E-28 0.386450955 0.108615624 66.38656867 0.827145772 0.602288869 12.1820762 0.006530853 2.185030101 -0.987867168 GDKSELNEIKENQRS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 GDKSELNEIKENQRSPVR 18 3 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR;GDKSELNEIKENQRS(1)PVR ;;; 233.5 7.16E-36 10433780000 2793150 2695620 1747390 1876550 3912700 3615050 4893900 4970090 2297780 4323330 TRUE FALSE FALSE 2597364.609 2482009.254 2424026.205 4368703.236 3421932.682 3169061.886 3669394.458 3838509.003 2496953.42 3240740.028 0.801472684 0.76587731 0.747985393 1.348057295 1.055910888 0.977882169 1.132270539 1.184454467 0.770488654 1 21.62789186 -5.219811283 24.99548469 1.073237982 0.771188185 0.478390454 0.141165611 414.9124987 249132.5288 0.037490887 0.064935444 6.03E-06 5.219811283 -0.302049797 GDLAFGAPGPRPPS(ph)PFDDPADDPEHK ddPTM_HeLa_A485_30min_R1 1 GDLAFGAPGPRPPSPFDDPADDPEHK 26 1 Q93074-3;Q93074;Q93074-2;Q7Z3Z5 Q93074-3 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 1 0 GDLAFGAPGPRPPS(1)PFDDPADDPEHK 99.7 0.0010168 824770000 395200 348330 312250 651020 438600 335620 458440 367580 373830 853340 TRUE FALSE FALSE 483110.8766 389064.1634 427764.2688 686583.5741 394931.444 353192.5442 360490.5489 277430.4287 448854.252 640618.0426 0.754132485 0.607326266 0.667736842 1.071751853 0.616485047 0.551330935 0.562723066 0.433066836 0.700658149 1 19.28910491 -4.212622082 20.03156155 0.673010395 0.754136829 0.002927157 0.189409816 15643.58287 6417079.649 0.04836944 17.25662598 6.13E-05 4.212622082 0.081126434 GDLAFGAPGPRPPS(ph)PFDDPADDPEHK ddPTM_HeLa_A486_30min_R1 3 GDLAFGAPGPRPPSPFDDPADDPEHK 26 1 Q93074-3;Q93074;Q93074-2;Q7Z3Z5 Q93074-3 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 1 0 GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK ;; 147.3 3.13E-09 1873650000 727408 776480 463830 356837 661459 844550 993750 900280 654080 1040680 TRUE FALSE FALSE 676420.4555 714948.8969 643437.3978 830734.5695 578492.6444 740358.0078 745103.2392 695305.897 710776.181 780086.9543 0.867109047 0.916498979 0.824827789 1.064925602 0.741574566 0.949071131 0.955154083 0.891318453 0.911149939 1 19.57327542 -14 0.177328298 1.391020307 0.882407128 0.127555972 0.080063819 287.3062863 2.750993809 39.52080111 0.247751042 1.00E-14 14 -0.508613179 GDLAFGAPGPRPPS(ph)PFDDPADDPEHKEAEGSSSSK ddPTM_HeLa_A485_30min_R1 3 GDLAFGAPGPRPPSPFDDPADDPEHKEAEGSSSSK 35 2 Q93074-3;Q93074;Q93074-2;Q7Z3Z5 Q93074-3 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 1 0 GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK;GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK;GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK ;; 252.31 1.62E-53 1087730000 462393 401778 258882 602272 480553 461029 874930 907380 399887 953820 TRUE FALSE FALSE 565250.7276 448762.4421 354653.2248 635172.5943 432707.456 485167.7656 687994.058 684843.6323 480140.6529 716050.2278 0.789400947 0.626719223 0.495290988 0.887050335 0.604297631 0.67756108 0.960818154 0.956418427 0.670540465 1 19.44970126 -6.749599818 24.35791619 0.893312452 0.675196245 0.402624231 0.129314343 163.4733616 336319.4233 0.048889225 0.037539218 1.78E-07 6.749599818 -0.218116208 GDLAFGAPGPRPPS(ph)PFDDPADDPEHKEAEGSSSSK ddPTM_HeLa_A486_30min_R1 4 GDLAFGAPGPRPPSPFDDPADDPEHKEAEGSSSSK 35 2 Q93074-3;Q93074;Q93074-2;Q7Z3Z5 Q93074-3 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 1 0 GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK;GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK;GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK;GDLAFGAPGPRPPS(1)PFDDPADDPEHKEAEGSSSSK ;;; 228.48 3.94E-40 983700000 1071310 1015290 453915 387847 832031 1120620 1523250 1422920 690834 1705400 TRUE FALSE FALSE 996216.7013 934834.7228 629683.0443 902927.4167 727669.9136 982369.298 1142116.739 1098952.178 750716.0474 1278356.74 0.779294754 0.73127844 0.492572241 0.706318814 0.569222887 0.768462564 0.893425679 0.859660018 0.587250823 1 20.28585906 -6.472710797 6.506263459 0.824649914 0.65442976 0.323177412 0.122778275 0.284896225 28.9851768 0.043541849 0.037749832 3.37E-07 6.472710797 -0.170220153 GDLGIEIPAEK ddPTM_HeLa_A485_30min_R1 2 GDLGIEIPAEK 11 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70;P30613-2;P30613 P14618 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase;Pyruvate kinase PKLR 0 0 ; ; 218.52 5.83E-20 236580000 522570 558240 503700 549510 696200 695960 832450 910330 533130 825420 FALSE FALSE TRUE 638813.8937 623521.312 690039.5907 579528.3399 626883.8835 732399.3894 654590.257 687070.1402 640124.3008 619657.9847 1.03091368 1.006234612 1.113581375 0.935239042 1.011661108 1.181941341 1.056373472 1.108789295 1.033028407 1 19.24111263 GDLGIEIPAEK ddPTM_HeLa_A486_30min_R1 2 GDLGIEIPAEK 11 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70;P30613-2;P30613 P14618 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase;Pyruvate kinase PKLR 0 0 ; ; 182.28 7.94E-09 70024000 102292 121712 88969 47912 136257 129229 139050 138292 104898 137916 FALSE FALSE TRUE 95121.85904 112067.0979 123420.1795 111541.5573 119166.3765 113286.0399 104258.2193 106805.9305 113990.6431 103380.9359 0.920110252 1.084020926 1.193838868 1.078937392 1.152691988 1.095811707 1.00848593 1.033129847 1.102627308 1 16.65761064 -6.740724554 24.3891853 1.038821598 1.094805595 0.106406807 0.071117469 404.3448108 476066.4066 0.027912292 0.021593586 1.82E-07 6.740724554 0.055983997 GDLS(ph)DVEEEEEEEMDVDEATGAVK ddPTM_HeLa_A486_30min_R1 2 GDLSDVEEEEEEEMDVDEATGAVK 24 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 GDLS(1)DVEEEEEEEMDVDEATGAVK;GDLS(1)DVEEEEEEEMDVDEATGAVK ; 182.15 1.48E-20 399240000 233671 241010 147180 93026 252430 246557 275780 306770 198898 284470 TRUE FALSE FALSE 217291.8696 221911.4899 204172.0376 216569.2293 220767.8756 216139.3041 206776.9271 236925.1677 216138.6388 213236.8604 1.019016455 1.040680722 0.957489419 1.015627546 1.035317605 1.01361136 0.969705363 1.111089177 1.01360824 1 17.70209732 -7.233351881 24.99403135 1.046761598 1.008348931 0.149642354 0.036702822 1144.692223 1018620.302 0.016675641 0.009626164 5.84E-08 7.233351881 -0.038412667 GDLS(ph)DVEEEEEEEMDVDEATGAVKK ddPTM_HeLa_A485_30min_R1 6 GDLSDVEEEEEEEMDVDEATGAVKK 25 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK ;;;;; 349.05 4.38E-142 2874370000 377123.9 308918 210275.1 525918 412095 463308.1 594664 678053 317698 689563 TRUE FALSE FALSE 461013.8105 345043.2729 288064.6098 554647.5686 371065.3748 487566.1957 467609.1784 511759.4386 381457.0745 517667.6346 0.890559463 0.666534374 0.556466332 1.07143567 0.716802346 0.941851804 0.903300008 0.988586893 0.736876422 1 18.9816666 -5.256896958 24.99787019 0.901129186 0.700721498 0.342131032 0.129253158 437.5213401 2407760.157 0.034081546 0.056603444 5.53E-06 5.256896958 -0.200407688 GDLS(ph)DVEEEEEEEMDVDEATGAVKK ddPTM_HeLa_A486_30min_R1 3 GDLSDVEEEEEEEMDVDEATGAVKK 25 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK ;; 352.71 3.27E-142 1526220000 627503 564317 293515 308176 546104 659740 873250 832980 416568 896530 TRUE FALSE FALSE 583518.2801 519598.4657 407171.8686 717449.3024 477606.5441 578347.9865 654753.6137 643328.6378 452676.4496 672033.0526 0.868288067 0.773173974 0.605880718 1.067580381 0.710689068 0.860594556 0.974287814 0.957287198 0.673592538 1 19.35817267 -5.251489937 24.99764858 0.884789724 0.751520247 0.199263026 0.130677782 1217.808674 3059698.111 0.034811646 0.059385756 5.60E-06 5.251489937 -0.133269477 GDMEQNDSDNRR ddPTM_HeLa_A485_30min_R1 2 GDMEQNDSDNRR 12 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 0 ; ; 155.86 2.97E-08 1351820000 439850 551120 639210 428170 660330 553940 587400 553030 619930 605310 FALSE FALSE TRUE 537693.115 615568.6899 875680.3787 451559.8429 594585.2266 582943.4418 461897.1914 417398.5254 744344.2647 454417.3569 1.183258313 1.354632873 1.927039902 0.993711697 1.308456241 1.282837095 1.016460275 0.918535613 1.638019 1 18.79365842 -5.313587878 24.99999815 1.16668123 1.474946664 0.237389246 0.264866331 491.1624677 235462.3035 0.073889626 0.109596165 4.86E-06 5.313587878 0.308265434 GDMS(ph)DEDDENEFFDAPEIITMPENLGHK ddPTM_HeLa_A485_30min_R1 9 GDMSDEDDENEFFDAPEIITMPENLGHK 28 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(0.999)DEDDENEFFDAPEIIT(0.001)MPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK ;;;;;;;; 201.7 1.46E-28 790563000 412347.4 298406 307630.2 617785.3 474116.3 312771.4 421212.1 277328.2 384514.5 782652 TRUE FALSE FALSE 504072.6565 333301.9859 421435.4125 651533.3466 426911.6164 329147.6269 331216.6938 209313.0241 461683.0332 587551.26 0.857921157 0.567273034 0.717274289 1.108896178 0.726594674 0.560202401 0.56372391 0.356246405 0.785774901 1 19.1643552 -6.006773928 24.98551958 0.611367216 0.804633237 0.103898297 0.202685674 582.4183804 2148249.88 0.064026835 0.069978125 9.85E-07 6.006773928 0.193266021 GDMS(ph)DEDDENEFFDAPEIITMPENLGHK ddPTM_HeLa_A486_30min_R1 9 GDMSDEDDENEFFDAPEIITMPENLGHK 28 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK ;;;;;;;; 248.43 1.68E-50 1251096000 594698 706930 454005.8 269360.9 608256 800252 761749 738568 668033 736646 TRUE FALSE FALSE 553012.7412 650910.2922 629809.0045 627085.7879 531962.8607 701525.0446 571151.3432 570412.1892 725938.6383 552185.0468 1.001498944 1.178790146 1.140575986 1.135644276 0.963377882 1.27045281 1.034347718 1.03300912 1.314665514 1 19.07479229 -6.247358027 24.9807015 1.126548911 1.095259583 0.035869511 0.112342009 4767.762448 8458142.361 0.036164037 0.036024309 5.66E-07 6.247358027 -0.031289327 GDMS(ph)DEDDENEFFDAPEIITMPENLGHKR ddPTM_HeLa_A485_30min_R1 8 GDMSDEDDENEFFDAPEIITMPENLGHKR 29 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR ;;;;;;; 264.56 1.40E-63 1877438000 568787 613968 545577 552979 793321 703929 893578 881459 619416 830509 TRUE FALSE FALSE 695311.7059 685766.2168 747408.6357 583186.8426 714335.1757 740785.634 702657.7604 665279.7982 743727.1096 623478.3907 1.115213801 1.099903745 1.198772318 0.935376191 1.145725636 1.188149654 1.126996173 1.067045479 1.192867501 1 19.24998003 -10.18101763 4.549688482 0.999978051 1.116827079 0.189599483 0.073630326 1.61E-05 2.89E-06 0.0699041 0.01695105 6.59E-11 10.18101763 0.116849029 GDMS(ph)DEDDENEFFDAPEIITMPENLGHKR ddPTM_HeLa_A486_30min_R1 7 GDMSDEDDENEFFDAPEIITMPENLGHKR 29 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR ;;;;;; 240.46 4.18E-50 1003411000 566718 580114 400184 223145 668650 575464 697861 673187 476093 673367 TRUE FALSE FALSE 526993.9947 534143.6539 555145.9621 519492.8371 584781.6821 504469.1026 523248.7966 519917.0157 517361.1246 504751.5203 1.044066186 1.058230897 1.099840099 1.029205096 1.158553582 0.999440482 1.036646301 1.030045467 1.024981805 1 18.94521383 GDPEWS(ph)SETDALVGSR ddPTM_HeLa_A485_30min_R1 1 GDPEWSSETDALVGSR 16 0 Q7Z7N9 Q7Z7N9 TMEM179B Transmembrane protein 179B 1 0 GDPEWS(0.838)S(0.158)ET(0.005)DALVGSR 115.38 0.00012732 44783000 26147 19776 25331 31237 28016 21855 37540 39901 24524 44322 TRUE FALSE FALSE 31963.30994 22088.63117 34701.99101 32943.39821 25226.62867 22999.29401 29519.27233 30115.21719 29445.74185 33273.34109 0.960628206 0.663853717 1.042936774 0.990083867 0.758163378 0.691222861 0.887174878 0.905085459 0.884964987 1 15.02207912 -8.208599073 1.223756288 0.998454489 0.854521132 0.109860703 0.118385285 1.873266737 5.468575435 0.11710172 0.035973868 6.19E-09 8.208599073 -0.143933357 GDPEWS(ph)SETDALVGSR ddPTM_HeLa_A486_30min_R1 2 GDPEWSSETDALVGSR 16 0 Q7Z7N9 Q7Z7N9 TMEM179B Transmembrane protein 179B 1 0 GDPEWS(0.802)S(0.158)ET(0.04)DALVGSR;GDPEWS(0.899)S(0.098)ET(0.003)DALVGSR ; 95.57 0.0007559 155220000 45539 56746 47302 17791.9 61735 42086 49023 51045 55910 70463 TRUE FALSE FALSE 42346.95126 52249.24029 65618.60119 41420.44235 53991.62064 36893.85722 36756.92689 39423.1678 60756.32382 52818.60616 0.801743066 0.989220354 1.242338751 0.78420173 1.022208357 0.698501151 0.695908687 0.746387886 1.150282604 1 15.68875861 GDPPRLS(ph)PDPVAGSAVSQELR ddPTM_HeLa_A486_30min_R1 1 GDPPRLSPDPVAGSAVSQELR 21 1 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 GDPPRLS(1)PDPVAGSAVSQELR 53.751 0.015325 939060000 393970 430430 469770 83765 455850 359300 383370 406710 381810 364620 TRUE FALSE FALSE 366354.7375 396321.1592 651677.5249 195009.1532 398673.0424 314973.2191 287446.7711 314111.0114 414905.5982 273316.7787 1.340403393 1.450043283 2.384330475 0.713491335 1.458648255 1.152410842 1.051698225 1.149256233 1.518039252 1 18.0602145 -5.277972465 24.99458148 1.164276948 1.697437592 0.383004439 0.333996535 863.8180255 1305910.946 0.092434937 0.137529257 5.27E-06 5.277972465 0.533160644 GDPQQQSITHIAIPQEAYNAVHVS(ph)GSPTALAAVK ddPTM_HeLa_A485_30min_R1 1 GDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVK 34 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 1 0 GDPQQQSITHIAIPQEAY(0.001)NAVHVS(0.586)GS(0.326)PT(0.087)ALAAVK 108.85 6.09E-05 1170700000 183970 409400 402850 70422 500550 244350 305460 389710 321800 140040 TRUE FALSE FALSE 224893.4918 457275.7687 551880.979 74268.97554 450713.4845 257143.7882 240195.9756 294133.0115 386382.3083 105130.6052 2.139181937 4.349597033 5.249479709 0.706444858 4.28717673 2.445946046 2.284738826 2.797786722 3.67526 1 16.6818232 -5.244897347 24.9946481 2.600321016 3.956437047 0.217901827 1.242583607 1331.560566 2011956.273 0.325130001 0.561112112 5.69E-06 5.244897347 1.356116031 GDPQQQSITHIAIPQEAYNAVHVS(ph)GSPTALAAVK ddPTM_HeLa_A486_30min_R1 1 GDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVK 34 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 1 0 GDPQQQSITHIAIPQEAY(0.017)NAVHVS(0.475)GS(0.376)PT(0.133)ALAAVK 72.725 0.00062048 6609400000 673860 726360 505220 297480 782040 883710 1157100 1047300 701950 735060 TRUE FALSE FALSE 626625.8938 668800.5882 700854.7143 692548.4738 683949.251 774686.8451 867581.3414 808852.6524 762795.5912 550996.1916 1.137259936 1.213802561 1.27197742 1.256902469 1.241295787 1.405974954 1.574568672 1.467982292 1.384393582 1 19.07168282 -6.248186069 5.420343095 1.409455032 1.227086617 0.165179057 0.144971666 0.239619118 24.4578009 0.04769453 0.045542636 5.65E-07 6.248186069 -0.182368416 GDPQQQSITHIAIPQEAYNAVHVSGS(ph)PTALAAVK ddPTM_HeLa_A485_30min_R1 1 GDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVK 34 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 1 0 GDPQQQSITHIAIPQEAYNAVHVS(0.035)GS(0.902)PT(0.063)ALAAVK 147.17 1.28E-09 4595700000 1162800 1293300 1165000 1557700 1906600 1022300 1636200 1314000 1380700 2065400 TRUE FALSE FALSE 1421460.848 1444540.185 1595981.98 1642793.207 1716772.21 1075826.047 1286612.503 991739.4397 1657793.825 1550533.791 0.916755802 0.93164057 1.029311318 1.059501712 1.10721367 0.693842375 0.82978682 0.639611626 1.069176199 1 20.56433354 -6.255697436 24.9986257 0.822915594 1.008540155 0.271562351 0.13015896 563.7043483 2454193.75 0.042514901 0.041430152 5.55E-07 6.255697436 0.185624561 GDQCCYSHS(ph)PPTPR ddPTM_HeLa_A485_30min_R1 4 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 0 GDQCCYS(0.007)HS(0.993)PPTPR;GDQCCYSHS(0.999)PPT(0.001)PR;GDQCCYSHS(0.995)PPT(0.005)PR;GDQCCYS(0.002)HS(0.996)PPT(0.002)PR ;;; 190.71 7.13E-18 5952170000 1075746 1522570 1617730 1005095 1767350 1360908 1527360 1617090 1384288 1378940 TRUE FALSE FALSE 1315041.986 1700621.317 2216195.646 1060000.795 1591386.428 1432163.039 1201027.059 1220496.142 1662101.904 1035195.636 1.27033185 1.642801861 2.14084717 1.023961808 1.537280852 1.383470901 1.160193317 1.179000471 1.605592071 1 19.98147201 -5.280495438 24.99938964 1.288685174 1.680474552 0.328037333 0.271063099 967.1671022 1268811.495 0.075742188 0.112552227 5.24E-06 5.280495438 0.391789378 GDQCCYSHS(ph)PPTPR ddPTM_HeLa_A486_30min_R1 4 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 0 GDQCCYSHS(0.999)PPTPR;GDQCCYS(0.003)HS(0.997)PPTPR;GDQCCYSHS(0.999)PPT(0.001)PR;GDQCCYSHS(0.999)PPTPR ;;; 201.63 5.72E-22 6278470000 1006103 1177781 1159470 333994 1362264 1050334 1228450 1225321 1030346 1154247 TRUE FALSE FALSE 935580.3752 1084449.344 1608447.836 777554.9111 1191396.147 920754.4701 921078.8168 946342.1569 1119657.221 865216.0383 1.081325743 1.253385624 1.859012968 0.898682961 1.376992674 1.064190248 1.064565121 1.093764002 1.294078209 1 19.72270088 -5.330307225 25 1.124014071 1.383492258 0.251842305 0.223932087 248.2500161 90117.34731 0.062313192 0.092425414 4.67E-06 5.330307225 0.259478188 GDQCCYSHSPPT(ph)PR ddPTM_HeLa_A485_30min_R1 2 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 0 GDQCCYSHS(0.001)PPT(0.999)PR;GDQCCYSHS(0.001)PPT(0.999)PR ; 108.71 0.00038605 599020000 308800 421450 473440 269490 475650 393270 460720 472990 366950 419750 TRUE FALSE FALSE 377491.4947 470734.9114 648585.1575 284211.5563 428292.6159 413861.0091 362283.4083 356988.4609 440593.4991 315114.0499 1.197951963 1.493855674 2.058255281 0.901932352 1.359166994 1.313368951 1.149689798 1.132886525 1.398203283 1 18.26551456 -5.280552485 24.99949695 1.196702354 1.57440456 0.36402785 0.243882906 903.9958359 1182403.455 0.068371465 0.10159281 5.24E-06 5.280552485 0.377702206 GDQCCYSHSPPT(ph)PR ddPTM_HeLa_A486_30min_R1 2 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 0 GDQCCYSHSPPT(1)PR;GDQCCYSHSPPT(1)PR ; 141.07 9.34E-07 547090000 417570 509370 513060 127351 576690 443780 518350 507990 395880 431920 TRUE FALSE FALSE 388300.4993 469005.6661 711730.5722 296479.564 504356.1628 389030.9356 388653.3475 392331.7663 430195.1971 323764.4207 1.19933036 1.448601626 2.198297672 0.915726204 1.557787486 1.201586434 1.20042019 1.211781596 1.328729069 1 18.30458493 -5.297426279 24.99999935 1.225819582 1.598730156 0.303700632 0.284765765 759.9213376 527913.5664 0.079104782 0.11733584 5.04E-06 5.297426279 0.372910575 GDQVLNFS(ph)DAEDLIDDSK ddPTM_HeLa_A485_30min_R1 3 GDQVLNFSDAEDLIDDSK 18 0 F8W126;Q96EZ8-4;Q96EZ8-3;Q96EZ8;Q96EZ8-2 F8W126 MCRS1 Microspherule protein 1 1 0 GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK ;; 197.72 4.16E-25 288966000 268170 215285 201887 417490 309168 254746 357998 264882 242559 549280 TRUE FALSE FALSE 327823.4913 240460.708 276573.4025 440296.4216 278386.1484 268084.1066 281508.8027 199919.2742 291238.3664 412354.6047 0.795003833 0.583140591 0.670717386 1.067761622 0.675113471 0.650130018 0.682686211 0.484823673 0.706281349 1 18.65352599 -10.12900375 5.453921192 1.000005351 0.69886316 0.277189804 0.144423542 9.82E-06 1.57E-06 0.146131638 0.035441499 7.43E-11 10.12900375 -0.301142191 GDQVLNFS(ph)DAEDLIDDSK ddPTM_HeLa_A486_30min_R1 4 GDQVLNFSDAEDLIDDSK 18 0 F8W126;Q96EZ8-4;Q96EZ8-3;Q96EZ8;Q96EZ8-2 F8W126 MCRS1 Microspherule protein 1 1 0 GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK;GDQVLNFS(1)DAEDLIDDSK ;;; 262.91 5.78E-58 431505000 357246 403856 226235 193008 350384 419597 503194 462099 360030 542171 TRUE FALSE FALSE 332204.9002 371852.9797 313839.2508 449332.3781 306435.5715 367831.3883 377289.539 356889.1453 391237.6903 406407.8527 0.817417523 0.914974889 0.77222733 1.105619331 0.754009967 0.905079432 0.92835199 0.878155141 0.962672566 1 18.63256875 -13.99999761 0.069656583 1.38761159 0.754886618 0.1561027 0.092800149 627.4092286 3.14170519 38.71536508 4.861677744 1.00E-14 13.99999761 -0.632724972 GDQVLNFS(ph)DAEDLIDDSKLK ddPTM_HeLa_A485_30min_R1 4 GDQVLNFSDAEDLIDDSKLK 20 1 F8W126;Q96EZ8-4;Q96EZ8-3;Q96EZ8;Q96EZ8-2 F8W126 MCRS1 Microspherule protein 1 1 0 GDQVLNFS(1)DAEDLIDDSKLK;GDQVLNFS(1)DAEDLIDDSKLK;GDQVLNFS(1)DAEDLIDDSKLK;GDQVLNFS(1)DAEDLIDDSKLK ;;; 193.19 7.74E-20 647085000 255967 256033 149512 303357 288437 317008 520294 518607 208244 449290 TRUE FALSE FALSE 312905.9761 285973.8322 204822.7105 319928.6248 259719.1995 333606.0487 409128.9365 391417.8201 250036.6607 337290.2716 0.92770531 0.847856746 0.607259467 0.948526097 0.770016871 0.989076996 1.212987658 1.160477645 0.741310028 1 18.36363118 -6.384680022 4.802205219 1.049017713 0.817819272 0.317166737 0.146228922 0.262565174 9.176712712 0.053106568 0.046409088 4.12E-07 6.384680022 -0.231198441 GDQVLNFS(ph)DAEDLIDDSKLK ddPTM_HeLa_A486_30min_R1 3 GDQVLNFSDAEDLIDDSKLK 20 1 F8W126;Q96EZ8-4;Q96EZ8-3;Q96EZ8;Q96EZ8-2 F8W126 MCRS1 Microspherule protein 1 1 0 GDQVLNFS(1)DAEDLIDDSKLK;GDQVLNFS(1)DAEDLIDDSKLK;GDQVLNFS(1)DAEDLIDDSKLK ;; 189.86 1.46E-19 484942000 267646 204474 111198 145661 225704 233884 376795 317637 154598 412411 TRUE FALSE FALSE 248885.3975 188270.7356 154256.8436 339106.1693 197394.0997 205029.77 282516.9057 245317.9891 167998.6791 309140.6013 0.80508803 0.609013293 0.498986037 1.096931842 0.638525315 0.663224983 0.91387836 0.793548269 0.54343777 1 18.23790362 -11.13787178 2.445579792 1.581777399 0.732412055 0.183214552 0.171421104 45484530.1 14229039.34 146382093.9 0.044826704 7.28E-12 11.13787178 -0.849365344 GDRDES(ph)DDGGVAQR ddPTM_HeLa_A485_30min_R1 1 GDRDESDDGGVAQR 14 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 GDRDES(1)DDGGVAQR 137.27 3.66E-06 106220000 22862 27795 31998 27166 37175 27983 31044 33927 26545 36717 TRUE FALSE FALSE 27947.57303 31045.38347 43835.39175 28650.00979 33473.72647 29448.14661 24411.19579 25606.35005 31872.33801 27564.12763 1.01391103 1.126296609 1.59030579 1.039394759 1.214394554 1.068350394 0.88561467 0.928973715 1.156297723 1 14.75050432 -6.40549023 3.471969188 0.985378924 1.206538224 0.260167533 0.16196792 0.342355791 7.597610289 0.062426488 0.05357625 3.93E-07 6.40549023 0.2211593 GDRDES(ph)DDGGVAQR ddPTM_HeLa_A486_30min_R1 2 GDRDESDDGGVAQR 14 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 GDRDES(1)DDGGVAQR;GDRDES(1)DDGGVAQR ; 124.43 1.48E-05 159024000 102447 133019 149243 42025 169838 124881 131413 134630 112036 123955 TRUE FALSE FALSE 95265.99434 122478.09 207033.8865 97836.32383 148535.3344 109474.4519 98532.07746 103977.688 121747.3707 92915.86119 1.025293132 1.318161274 2.228186704 1.052956111 1.598600416 1.178210593 1.060444107 1.119052082 1.310296963 1 16.50363727 -6.373023948 5.932196184 1.131298788 1.458571299 0.189174277 0.322334163 0.415271087 19.14746723 0.115723171 0.101623622 4.24E-07 6.373023948 0.327272512 GDREEEVERPVS(ph)SPGDPEQK ddPTM_HeLa_A486_30min_R1 2 GDREEEVERPVSSPGDPEQK 20 2 O43149 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 GDREEEVERPVS(0.5)S(0.5)PGDPEQK;GDREEEVERPVS(0.5)S(0.5)PGDPEQK ; 158.69 7.99E-11 1142540000 845860 892360 583790 456720 938970 1018750 1105680 1123320 784560 1310670 TRUE FALSE FALSE 786569.582 821646.1437 809849.1224 1063267.241 821195.6271 893066.9829 829027.1693 867564.5579 852566.2925 982469.701 0.800604417 0.836306853 0.824299336 1.082239218 0.835848298 0.909002061 0.843819579 0.883044594 0.867778713 1 19.90605339 GDRS(ph)PEPGQTWTR ddPTM_HeLa_A485_30min_R1 2 GDRSPEPGQTWTR 13 1 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GDRS(1)PEPGQTWTR;GDRS(1)PEPGQTWTR ; 133.9 6.95E-06 1333200000 288590 451740 525700 302450 565240 404260 432140 417800 493750 520110 TRUE FALSE FALSE 352785.8499 504567.0634 720178.3062 318972.0777 508962.7209 425426.4285 339809.7587 315333.8949 592841.0961 390456.1489 0.903522331 1.292250269 1.844453745 0.81692164 1.303508018 1.08956263 0.870289173 0.807603865 1.518329517 1 18.57480101 -5.318014758 24.99993573 1.053733799 1.341302227 0.165747927 0.296637667 500.5441639 221182.8428 0.08353742 0.123906073 4.81E-06 5.318014758 0.287568428 GDRS(ph)PEPGQTWTR ddPTM_HeLa_A486_30min_R1 2 GDRSPEPGQTWTR 13 1 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GDRS(1)PEPGQTWTR;GDRS(1)PEPGQTWTR ; 151.39 2.61E-08 1426320000 323090 432500 434270 104880 520750 392030 378990 406350 417530 347140 TRUE FALSE FALSE 300443.0594 398227.1249 602430.9742 244165.9403 455432.6792 343665.3245 284162.6935 313832.9756 453721.8366 260213.8845 1.154600417 1.530383844 2.3151377 0.938327871 1.750224359 1.320703256 1.092035093 1.206057763 1.743649604 1 17.98933842 -6.454124155 9.301146102 1.267507052 1.546506617 0.106894058 0.385859243 1.100912167 143.2113063 0.135128332 0.118931103 3.51E-07 6.454124155 0.278999565 GDRSEDFGVNEDLADSDAR ddPTM_HeLa_A485_30min_R1 1 GDRSEDFGVNEDLADSDAR 19 1 P04083 P04083 ANXA1 Annexin A1 0 0 83.776 0.0018254 192610000 100130 133830 159130 115680 230820 170960 226470 296710 146500 183730 FALSE FALSE TRUE 122403.5731 149480.2543 217998.809 121999.3055 207838.7503 179911.2012 178082.8344 223941.4073 175901.2062 137929.4923 0.887435827 1.083743961 1.580509036 0.884504854 1.506847788 1.304370793 1.291114985 1.623593356 1.275298004 1 17.07357144 -4.532371861 22.10234361 1.322446907 0.936512478 0.269480855 0.222034716 48.32905884 112523.5583 0.053508275 0.142248148 2.94E-05 4.532371861 -0.38593443 GDRVYS(ph)PYNHR ddPTM_HeLa_A485_30min_R1 2 GDRVYSPYNHR 11 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 GDRVYS(1)PYNHR;GDRVYS(0.999)PYNHR ; 83.633 0.0023455 563330000 217030 491660 478270 127470 589480 432980 408240 561600 410310 221700 TRUE FALSE FALSE 265307.5748 549155.3601 655201.9755 134433.3633 530789.3014 455650.1633 321016.189 423866.7194 492655.4534 166434.2701 1.594068185 3.299532962 3.936701108 0.807726457 3.189182739 2.737718398 1.928786594 2.546751455 2.960060168 1 17.344593 -10.38344648 3.348450743 0.986486352 2.571999527 0.226391358 0.862209589 139897901.1 197291019.6 18407353.47 0.206133542 4.14E-11 10.38344648 1.585513175 GDRVYS(ph)PYNHR ddPTM_HeLa_A486_30min_R1 2 GDRVYSPYNHR 11 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 GDRVYS(1)PYNHR;GDRVYS(1)PYNHR ; 71.344 0.0061781 379700000 366710 435180 448820 97187 620830 322310 373890 408630 324380 309030 TRUE FALSE FALSE 341005.5227 400694.7519 622615.1238 226256.2476 542959.7124 282546.6692 280338.7674 315593.8693 352497.5196 231646.8766 1.472092038 1.729765399 2.6877769 0.97672911 2.343911217 1.219730106 1.21019878 1.362392077 1.521702018 1 17.8215677 -6.300649224 24.86948048 1.282166083 1.834727706 0.293075998 0.449238603 686.2903644 435288.6933 0.152302321 0.134320108 5.00E-07 6.300649224 0.552561622 GDRYDDYRDYDS(ph)PERER ddPTM_HeLa_A485_30min_R1 1 GDRYDDYRDYDSPERER 17 3 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 GDRYDDYRDYDS(1)PERER 94.463 0.0040788 410410000 200420 251920 285180 251280 380050 293950 365860 386010 270270 436430 TRUE FALSE FALSE 245002.7376 281379.8526 390679.9493 265006.7901 342210.8876 309340.7675 287691.0222 291340.4423 324510.7099 327636.0329 0.747789355 0.858818397 1.192420583 0.80884507 1.044484895 0.944159788 0.878081143 0.889219784 0.990460991 1 18.32173451 -4.526597419 24.99994883 0.961968214 0.77554653 0.329626604 0.099518453 101.1467473 679996.0871 0.024402088 0.065211581 2.97E-05 4.526597419 -0.186421685 GDRYDDYRDYDS(ph)PERER ddPTM_HeLa_A486_30min_R1 1 GDRYDDYRDYDSPERER 17 3 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 GDRYDDYRDYDS(1)PERER 100.19 0.0024775 594750000 127110 139090 184790 50061 234840 112120 155910 146550 122510 123960 TRUE FALSE FALSE 118200.2454 128068.0018 256345.6368 116544.5379 205384.1774 98287.77435 116899.669 113183.7642 133129.2654 92919.60916 1.27206998 1.378266687 2.758789444 1.254251272 2.210342674 1.057772146 1.258073188 1.218082654 1.43273596 1 16.50369547 -6.280141607 24.95858431 1.211009207 1.778470447 0.301038894 0.442536289 1083.094411 1445411.642 0.153692732 0.13577092 5.25E-07 6.280141607 0.56746124 GDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_HeLa_A485_30min_R1 2 GDSESEEDEDLEVPVPSR 18 0 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 GDS(1)ES(1)EEDEDLEVPVPSR;GDS(1)ES(1)EEDEDLEVPVPSR ; 328.67 4.00E-101 1130370000 490860 451860 483390 569800 501680 381660 501540 352910 440640 713660 TRUE FALSE FALSE 600050.1136 504701.0963 662216.0765 600926.7312 451730.9777 401643.1274 394381.8818 266358.2692 529072.4062 535757.6959 1.120002789 0.942032378 1.236036517 1.121639009 0.843162835 0.74967309 0.736119863 0.497161816 0.987521804 1 19.03122114 -5.855290049 3.911564381 0.762377343 1.103414469 0.49118668 0.149521923 0.175782254 5.081216983 0.046617878 0.05427035 1.40E-06 5.855290049 0.341037126 GDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_HeLa_A486_30min_R1 3 GDSESEEDEDLEVPVPSR 18 0 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 GDS(1)ES(1)EEDEDLEVPVPSR;GDS(1)ES(1)EEDEDLEVPVPSR;GDS(1)ES(1)EEDEDLEVPVPSR ;; 379.85 5.47E-130 1994120000 1202350 1558210 1081210 402918 1238730 1381440 1342980 1236010 1388620 1370430 TRUE FALSE FALSE 1118071.474 1434731.765 1499883.468 938013.4663 1083356.933 1211011.978 1006952.199 954597.5049 1508986.7 1027265.408 1.088395915 1.396651492 1.460073956 0.91311696 1.054602758 1.178869617 0.980225939 0.929260829 1.468935572 1 19.97037754 -5.258450318 24.99960565 1.071583091 1.323201555 0.281717525 0.175438825 328.0082341 2743348.956 0.047381917 0.077740246 5.52E-06 5.258450318 0.251618464 GDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_A485_30min_R1 2 GDSESEEDEQDSEEVR 16 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 GDS(1)ES(1)EEDEQDSEEVR;GDS(1)ES(1)EEDEQDSEEVR ; 285.19 1.06E-58 1054550000 768490 785760 856040 969650 1094150 741800 954620 829420 851800 1246880 TRUE FALSE FALSE 939437.9492 877647.7968 1172724.819 1022619.524 985212.5842 780639.501 750657.6385 626003.4445 1022748.447 936055.7631 1.003613231 0.937602044 1.252836492 1.092477141 1.052514843 0.833966876 0.80193688 0.668767256 1.092614871 1 19.83623495 -6.228470514 5.903187485 0.853686569 1.073489002 0.331713447 0.131124435 0.204673206 22.09326631 0.044196188 0.043293447 5.91E-07 6.228470514 0.219802433 GDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_A486_30min_R1 1 GDSESEEDEQDSEEVR 16 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 GDS(1)ES(1)EEDEQDSEEVR 205.78 5.23E-25 563430000 217270 258310 210050 71174 303630 288970 277680 287550 223650 254120 TRUE FALSE FALSE 202040.495 237840.5749 291386.9853 165696.6689 265545.8942 253319.8194 208201.527 222081.1422 243036.1621 190486.698 1.060654088 1.24859414 1.529697288 0.869859527 1.394039043 1.329855691 1.092997722 1.165861682 1.275869468 1 17.53933073 -10.1256084 3.966882716 0.999933094 1.221564443 0.12187268 0.175875144 18276375.06 9330224.377 11157.92516 0.041116673 7.49E-11 10.1256084 0.221631348 GDS(ph)ETDLEALFNAVMNPK ddPTM_HeLa_A485_30min_R1 2 GDSETDLEALFNAVMNPK 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 GDS(0.987)ET(0.013)DLEALFNAVMNPK;GDS(0.545)ET(0.455)DLEALFNAVMNPK ; 286.57 9.49E-70 658035000 955641 833298 683830 1031606 1102871 800911 1214046 980285 813594 1508944 TRUE FALSE FALSE 1168220.044 930744.9524 936807.1735 1087960.024 993065.2908 842845.4615 954655.1543 739868.5667 976874.8531 1132792.031 1.031274949 0.821637977 0.826989551 0.960423444 0.876652787 0.744042541 0.842745295 0.653137157 0.86236028 1 20.11145159 -6.079468236 6.91474522 0.800663893 0.900334573 0.132961546 0.101304209 0.444106467 32.99841667 0.032045612 0.032187943 8.33E-07 6.079468236 0.099670679 GDS(ph)ETDLEALFNAVMNPK ddPTM_HeLa_A486_30min_R1 5 GDSETDLEALFNAVMNPK 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 GDS(0.5)ET(0.5)DLEALFNAVMNPK;GDS(0.5)ET(0.5)DLEALFNAVMNPK;GDS(0.5)ET(0.5)DLEALFNAVMNPK;GDS(0.999)ET(0.001)DLEALFNAVMNPK;GDS(0.997)ET(0.003)DLEALFNAVMNPK ;;;; 321.19 1.36E-89 1060001900 484250.6 530748 318117.2 224476.6 466303 532223 527257 583027 448718 634749 TRUE FALSE FALSE 450307.1336 488689.5955 441300.6993 522592.8692 407814.9296 466562.7375 395331.7218 450284.4795 487613.2375 475803.7189 0.946413649 1.027082337 0.927484763 1.098337084 0.857107487 0.980578165 0.830871442 0.946366036 1.024820148 1 18.86000702 -5.776079229 24.99995943 0.933852303 0.996608653 0.142779398 0.070753368 443.8051399 757867.6606 0.02114952 0.02408118 1.67E-06 5.776079229 0.06275635 GDS(ph)LILEHQWELEK ddPTM_HeLa_A485_30min_R1 4 GDSLILEHQWELEK 14 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK ;;; 269.49 1.03E-42 1126060000 1719130 1692380 1400770 2055050 1842240 1946220 2571920 2553400 1621790 2554870 TRUE FALSE FALSE 2101544.538 1890289.119 1918973.114 2167312.178 1658820.117 2048121.07 2022408.281 1927174.646 1947268.377 1917987.928 1.095702693 0.985558403 1.000513656 1.129992606 0.864875161 1.06784878 1.054442654 1.004789769 1.015266232 1 20.87116221 -4.246979632 23.42540232 1.015385139 1.095702829 0.126736 0.064440534 2245.814658 3638164.664 0.01536274 0.295086875 5.66E-05 4.246979632 0.080317689 GDS(ph)LILEHQWELEK ddPTM_HeLa_A486_30min_R1 4 GDSLILEHQWELEK 14 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK ;;; 257.81 9.30E-42 903610000 1104030 1294730 725638 492828 1105200 1271390 1405190 1325670 1108050 1538910 TRUE FALSE FALSE 1026643.198 1192130.879 1006624.467 1147328.49 966575.5104 1114538.828 1053596.599 1023843.88 1204096.666 1153556.919 0.88998053 1.033439148 0.872626612 0.994600675 0.837908814 0.966175842 0.913346001 0.887553846 1.043812096 1 20.13765776 -7.76786036 24.99995044 1.021906087 0.926833049 0.318651238 0.05691542 187.795857 731144.7131 0.046729753 0.013219388 1.71E-08 7.76786036 -0.095073038 GDS(ph)LILEHQWELEKLELLHEVEK ddPTM_HeLa_A485_30min_R1 2 GDSLILEHQWELEKLELLHEVEK 23 1 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 GDS(1)LILEHQWELEKLELLHEVEK;GDS(1)LILEHQWELEKLELLHEVEK ; 128.37 1.79E-06 28153000 9714.4 7296 13664.7 21410.5 40495 18193.2 38415 49122 18513.2 34543 TRUE FALSE FALSE 11875.33477 8149.203733 18719.84117 22580.1014 36463.17561 19145.76782 30207.32143 37074.75248 22228.62943 25932.06582 0.457940175 0.314252007 0.721880058 0.870740556 1.406103774 0.738304767 1.164863673 1.429687582 0.857186989 1 14.66244952 -5.138800423 1.906503475 1.104858293 0.382581405 0.625637486 0.213341474 0.212883772 1.499998032 0.063002094 0.145821094 7.26E-06 5.138800423 -0.722276888 GDS(ph)LILEHQWELEKLELLHEVEK ddPTM_HeLa_A486_30min_R1 1 GDSLILEHQWELEKLELLHEVEK 23 1 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 GDS(1)LILEHQWELEKLELLHEVEK 225.17 2.05E-38 15144000 8900.6 14590 13106 14460 39949 19941 34772 41022 13138 15446 TRUE FALSE FALSE 8276.713903 13433.83526 18180.99419 33663.61077 34938.22391 17480.88217 26071.67782 31682.1861 14276.81242 11578.22106 0.71485195 1.160267643 1.570275269 2.907494216 3.017581347 1.509807255 2.251786149 2.736360442 1.233074782 1 13.49912599 -4.874457329 2.90900534 2.188259029 0.886002647 0.316183809 0.665363752 0.273596508 4.591871826 0.178860565 0.461233239 1.34E-05 4.874457329 -1.302256382 GDS(ph)LKEPTSIAESSR ddPTM_HeLa_A485_30min_R1 3 GDSLKEPTSIAESSR 15 1 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 GDS(1)LKEPTSIAESSR;GDS(1)LKEPTSIAESSR;GDS(1)LKEPTSIAESSR ;; 166.38 2.43E-12 1625640000 1257910 739550 426213 1806040 646534 874410 1294080 991930 826310 3559040 TRUE FALSE FALSE 1537727.74 826033.9393 583886.9249 1904699.392 582162.8048 920192.7555 1017589.236 748657.6122 992142.8376 2671836.827 0.575532055 0.309163318 0.218533901 0.712880133 0.217888607 0.344404548 0.380857553 0.280203343 0.371333619 1 21.34940047 -10.40207437 2.78655181 1.01351114 0.373421245 0.614058926 0.147642098 7530051.143 8480081.521 810743.2757 0.0367477 3.96E-11 10.40207437 -0.640089895 GDS(ph)LKEPTSIAESSR ddPTM_HeLa_A486_30min_R1 4 GDSLKEPTSIAESSR 15 1 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 GDS(0.996)LKEPT(0.004)SIAESSR;GDS(0.997)LKEPT(0.001)S(0.001)IAESSR;GDS(1)LKEPTSIAESSR;GDS(1)LKEPTSIAESSR ;;; 174.91 7.10E-13 2242780000 1113920 1293610 814860 514850 1393430 1789640 1638670 1409590 1456540 2646430 TRUE FALSE FALSE 1035839.96 1191099.632 1130395.615 1198596.819 1218653.016 1568852.413 1228657.434 1088657.128 1582794.06 1983746.703 0.522163419 0.600429294 0.569828604 0.604208601 0.614318862 0.790853192 0.619362055 0.548788374 0.79788113 1 20.91979639 -14 0.152841867 2.374541023 0.514570815 0.733425198 0.073230542 72.15675595 0.648272029 29.9340108 0.364226065 1.00E-14 14 -1.859970208 GDS(ph)PELKPR ddPTM_HeLa_A485_30min_R1 2 GDSPELKPR 9 1 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 GDS(1)PELKPR;GDS(1)PELKPR ; 128.28 0.00012845 840500000 582750 602360 621960 714270 782190 647650 697590 612410 612760 1019300 TRUE FALSE FALSE 712380.727 672800.7622 852048.8859 753288.7615 704312.4172 681559.9525 548544.1977 462215.4873 735735.3114 765207.2688 0.930964401 0.8792399 1.113487705 0.984424472 0.920420448 0.89068672 0.716857014 0.604039593 0.961485001 1 19.54549105 -6.390767703 2.482905226 0.789840169 0.973641116 0.219646007 0.121608591 0.363255232 4.379172028 0.048415142 0.041193683 4.07E-07 6.390767703 0.183800948 GDS(ph)PELKPR ddPTM_HeLa_A486_30min_R1 1 GDSPELKPR 9 1 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 GDS(1)PELKPR 103.43 0.00066443 504200000 98062 113590 78657 36317 128510 136900 136190 142130 104540 147660 TRUE FALSE FALSE 91188.36019 104588.7147 109115.0969 84547.81136 112391.0775 120010.6699 102113.8215 109770.1017 113601.6114 110684.9749 0.823854911 0.944922423 0.985816702 0.763859877 1.01541404 1.08425439 0.92256263 0.991734441 1.02635079 1 16.75609987 GDS(ph)RSPS(ph)HKR ddPTM_HeLa_A485_30min_R1 1 GDSRSPSHKR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GDS(0.978)RS(0.029)PS(0.993)HKR 79.652 0.028813 362180000 135870 74048 44373 236410 62000 139280 103770 114760 95441 172730 TRUE FALSE FALSE 166093.8128 82707.26947 60788.41921 249324.4797 55827.0623 146572.4854 81598.69178 86614.93006 114595.1333 129671.5899 1.280880515 0.637821049 0.468787491 1.922737895 0.430526551 1.130336148 0.629271931 0.667956105 0.883733541 1 16.9845029 GDS(ph)VSDSGSDALR ddPTM_HeLa_A485_30min_R1 5 GDSVSDSGSDALR 13 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 GDS(0.848)VS(0.152)DSGSDALR;GDS(0.852)VS(0.139)DS(0.008)GSDALR;GDS(0.873)VS(0.127)DSGSDALR;GDS(0.888)VS(0.112)DSGSDALR;GDS(0.998)VS(0.001)DSGSDALR ;;;; 253.72 6.12E-42 1250950000 1370880 1497640 1644840 1586490 2299730 1403110 1834720 2147590 1535540 1831180 TRUE FALSE FALSE 1675827.527 1672775.97 2253334.764 1673155.931 2070760.806 1476574.67 1442717.084 1620890.185 1843708.793 1374700.526 1.219049163 1.216829366 1.639145923 1.217105762 1.506335938 1.074106427 1.049477363 1.179086029 1.341171228 1 20.39068594 -6.27555464 24.88171416 1.135005401 1.359359977 0.362787367 0.15291113 893.3489323 1574748.824 0.053771224 0.04764813 5.30E-07 6.27555464 0.224354576 GDS(ph)VSDSGSDALR ddPTM_HeLa_A486_30min_R1 4 GDSVSDSGSDALR 13 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 GDS(0.863)VS(0.137)DSGSDALR;GDS(0.992)VS(0.008)DSGSDALR;GDS(0.998)VS(0.002)DSGSDALR;GDS(0.998)VS(0.002)DSGSDALR ;;; 273.34 1.72E-48 2494820000 1430600 1936950 1734980 588364 2074860 1842030 1932990 1760880 1612780 1701060 TRUE FALSE FALSE 1330322.328 1783459.028 2406810.72 1369741.126 1814611.711 1614779.067 1449335.457 1359966.064 1752577.069 1275103.504 1.043305366 1.39867785 1.887541453 1.074219561 1.423109344 1.266390581 1.13664142 1.066553468 1.374458672 1 20.28218293 -6.529525623 2.987293397 1.150000303 1.380446634 0.162815867 0.233989916 0.495819729 9.062964972 0.095970167 0.075745858 2.95E-07 6.529525623 0.230446331 GDSIEEILADS(ph)EDEEDNEEEER ddPTM_HeLa_A486_30min_R1 2 GDSIEEILADSEDEEDNEEEER 22 0 Q5JTH9-2;Q5JTH9-3;Q5JTH9 Q5JTH9-2 RRP12 RRP12-like protein 1 0 GDSIEEILADS(1)EDEEDNEEEER;GDSIEEILADS(1)EDEEDNEEEER ; 187.95 8.25E-20 243150000 291830 353570 337880 120315 334490 303810 343640 338480 330850 311300 TRUE FALSE FALSE 271374.224 325551.8255 468716.1847 280099.4004 292535.1452 266329.0111 257657.6373 261415.493 359528.3444 233348.4538 1.162957027 1.395131702 2.008653484 1.200348217 1.253640813 1.141336087 1.104175465 1.120279516 1.540735919 1 17.83212638 -5.45033413 24.99991473 1.195458526 1.525363873 0.287463688 0.236556 187.3945326 64577.99774 0.066894815 0.099221014 3.55E-06 5.45033413 0.329905347 GDSK(ac)NAK(ac)K ddPTM_HeLa_A486_30min_R1 2 GDSKNAKK 8 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 2 ; GDSK(1)NAK(1)K;GDSK(1)NAK(1)K 124.74 0.0031843 65424000 41096 40724 44974 21855.5 45493 78133 55762 51554 68460 65536 FALSE TRUE FALSE 38215.38262 37496.88193 62389.13725 50880.70852 39786.84373 68493.74486 41809.75781 39816.27962 74394.16792 49125.35903 0.777915589 0.763289728 1.269998601 1.035732044 0.809904386 1.394264514 0.851082997 0.810503585 1.51437403 1 15.58418033 -4.73458147 24.72526235 1.069966707 0.77060211 0.227850442 0.23059004 293.920487 270576.7895 0.056692661 0.14990069 1.84E-05 4.73458147 -0.299364597 GDSK(ac)NAK(ac)K(ac)K ddPTM_HeLa_A486_30min_R1 2 GDSKNAKKK 9 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 ; GDSK(1)NAK(1)K(1)K;GDSK(1)NAK(1)K(1)K 142.83 0.00038844 66594000 28730 46786 36334 22553 59318 65007 55399 57243 57500 65538 FALSE TRUE FALSE 26716.17536 43078.50697 50403.49786 52504.52377 51877.78332 56987.09728 41537.58425 44210.01851 62484.1463 49126.85822 0.543820149 0.876883003 1.025986592 1.06875395 1.055996357 1.159998814 0.845516806 0.899915446 1.271893798 1 15.58422436 -4.288581419 1.957613257 1.037617517 0.411802414 0.641157308 0.113483784 0.462263792 1.978444638 0.030955187 0.512358548 5.15E-05 4.288581419 -0.625815102 GDT(ph)PGHATPGHGGATSSAR ddPTM_HeLa_A485_30min_R1 1 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GDT(0.991)PGHAT(0.009)PGHGGATSSAR 143.47 3.22E-08 640560000 65576 104570 131210 50074 128820 76021 80598 69054 128410 107340 TRUE FALSE FALSE 80163.15497 116798.5519 179750.0391 52809.41583 115994.2285 80001.34201 63377.57887 52118.39823 154180.7092 80582.11345 0.99480085 1.449435202 2.230644388 0.655349104 1.439453788 0.9927928 0.786496856 0.646773781 1.913336627 1 16.29817202 -5.284526866 24.99598796 1.048671956 1.547407929 0.199206087 0.455257449 1224.900354 1326152.623 0.126908559 0.188367487 5.19E-06 5.284526866 0.498735973 GDT(ph)PGHATPGHGGATSSAR ddPTM_HeLa_A486_30min_R1 1 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GDT(0.946)PGHAT(0.054)PGHGGATSSAR 127.28 6.23E-06 530910000 76328 103520 90122 6001.6 90141 70118 69158 65374 90290 40576 TRUE FALSE FALSE 70977.80136 95316.69819 125019.652 13972.0281 78834.67525 61467.55407 51853.93692 50489.7673 98116.4099 30415.50549 2.333605844 3.133819302 4.110392049 0.459371885 2.591923888 2.020928243 1.704852051 1.660000927 3.225868132 1 14.89251936 -5.247799366 24.99965561 1.873605798 3.186726983 0.370269919 0.823858108 883.8956075 1620016.716 0.216649489 0.372649455 5.65E-06 5.247799366 1.313121185 GDTNIKPILQVINIRPITTGNS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 GDTNIKPILQVINIRPITTGNSPPR 25 2 P27694;I3L524;I3L2M5 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 GDTNIKPILQVINIRPIT(0.004)T(0.016)GNS(0.98)PPR;GDTNIKPILQVINIRPIT(0.005)T(0.02)GNS(0.975)PPR ; 149.88 1.47E-09 1376170000 777940 892050 922930 860880 1092440 925830 1035500 1047700 893180 1116380 TRUE FALSE FALSE 950990.0691 996367.4877 1264360.213 907907.6945 983672.8378 974305.0272 814256.9657 790749.9323 1072433.033 838087.0115 1.134715198 1.18885924 1.508626427 1.083309587 1.173712066 1.162534455 0.971566144 0.943517703 1.279620157 1 19.67674051 -6.034625833 1.344429919 1.053368911 1.254115243 0.253404434 0.136349247 0.585890723 2.181952646 0.059604562 0.065248084 9.23E-07 6.034625833 0.200746332 GDTNIKPILQVINIRPITTGNS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 GDTNIKPILQVINIRPITTGNSPPR 25 2 P27694;I3L524;I3L2M5 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 GDTNIKPILQVINIRPIT(0.01)T(0.005)GNS(0.985)PPR;GDTNIKPILQVINIRPIT(0.006)T(0.005)GNS(0.989)PPR ; 178.89 1.67E-20 1182800000 634000 743090 583310 207801 750080 662350 666520 702060 631660 762240 TRUE FALSE FALSE 589559.874 684204.8421 809183.2536 483771.2297 655997.9722 580635.9913 499749.6463 542216.2639 686412.7974 571370.1427 1.031835285 1.197480917 1.416215502 0.846686226 1.148113846 1.016216893 0.874651314 0.948975495 1.201345233 1 19.12406612 -5.269110163 24.99971364 1.003996863 1.213407605 0.341326712 0.133693269 656.2999075 2138935.834 0.037620739 0.057020068 5.38E-06 5.269110163 0.209410742 GDTPGHAT(ph)PGHGGATSSAR ddPTM_HeLa_A485_30min_R1 3 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GDT(0.325)PGHAT(0.675)PGHGGATSSAR;GDT(0.098)PGHAT(0.902)PGHGGATSSAR;GDT(0.009)PGHAT(0.991)PGHGGATSSAR ;; 219.35 1.52E-34 1011700000 238796 307468 412480 218678 397329 237492 267241 212032 344771 331501 TRUE FALSE FALSE 291915.3464 343423.708 565073.5167 230623.8254 357769.5297 249926.7139 210142.7772 160030.8195 413963.3773 248863.9015 1.172991923 1.379965941 2.270612625 0.926706622 1.43761119 1.004270657 0.844408433 0.64304553 1.663412712 1 17.92499745 GDTPGHAT(ph)PGHGGATSSAR ddPTM_HeLa_A486_30min_R1 2 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GDTPGHAT(1)PGHGGATSSAR;GDTPGHAT(1)PGHGGATSSAR ; 157.9 5.96E-09 330080000 198780 278290 291500 9720.3 287270 208068 208090 217188 238130 130916 TRUE FALSE FALSE 184846.5485 256237.2869 404376.6066 22629.34964 251237.9179 182398.6856 156023.681 167739.0336 258771.3001 98133.78148 1.883617911 2.611101733 4.120666712 0.230596939 2.560157309 1.858673771 1.589907967 1.709289411 2.636923761 1 16.58246223 -5.254426388 24.99951624 1.728111493 2.845725919 0.306851901 0.832683217 736.3139778 2624764.046 0.221529273 0.373447142 5.57E-06 5.254426388 1.117614425 GDTPGHATPGHGGAT(ph)SSARK ddPTM_HeLa_A486_30min_R1 1 GDTPGHATPGHGGATSSARK 20 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GDTPGHAT(0.003)PGHGGAT(0.332)S(0.332)S(0.332)ARK 57.068 0.020984 15336000 41786 39505 31441 2726.1 39642 35531 40857 40697 38898 25042 TRUE FALSE FALSE 38857.01718 36374.47993 43615.79722 6346.498569 34669.73071 31147.54647 30634.14646 31431.18151 42269.70996 18771.3202 2.070020476 1.937768869 2.323533814 0.338095483 1.846952177 1.659315708 1.631965473 1.674425729 2.251824033 1 14.1962425 GDTSHS(ph)PTPGK ddPTM_HeLa_A485_30min_R1 4 GDTSHSPTPGK 11 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 GDTSHS(0.994)PT(0.006)PGK;GDTSHS(0.995)PT(0.005)PGK;GDT(0.013)S(0.013)HS(0.966)PT(0.007)PGK;GDTSHS(0.998)PT(0.002)PGK ;;; 143.76 7.50E-07 3413930000 1702700 1785660 861300 2540020 1126020 1745700 1765820 2442340 1892340 2814940 TRUE FALSE FALSE 2081459.741 1994477.404 1179930.712 2678774.861 1013909.495 1837102.153 1388538.132 1843352.286 2272115.28 2113227.263 0.984967295 0.943806394 0.55835486 1.267622706 0.479791981 0.869334872 0.65706995 0.872292497 1.075187378 1 21.0110165 -7.655075107 5.08791809 1.034972492 0.819581242 0.133793745 0.214363393 0.395692869 15.6715833 0.148841197 0.052194673 2.21E-08 7.655075107 -0.21539125 GDTSHS(ph)PTPGK ddPTM_HeLa_A486_30min_R1 4 GDTSHSPTPGK 11 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 GDT(0.003)S(0.003)HS(0.872)PT(0.123)PGK;GDTSHS(0.96)PT(0.04)PGK;GDTSHS(0.834)PT(0.165)PGK;GDT(0.003)S(0.003)HS(0.994)PT(0.001)PGK ;;; 117.63 0.00019902 1817770000 1828960 739970 1536680 711930 860740 2958890 1481010 1228400 2056910 2148640 TRUE FALSE FALSE 1700759.349 681332.0823 2131723.65 1657409.019 752777.9631 2593852.236 1110445.633 948720.1358 2235204.615 1610606.559 1.055974434 0.423028255 1.323553315 1.029058903 0.467387866 1.610481605 0.689458035 0.589045246 1.387803001 1 20.61917268 -4.758830155 24.99911241 0.988421248 0.739501541 0.076495327 0.371649112 189.8628966 1818983.795 0.09255339 0.222813108 1.74E-05 4.758830155 -0.248919707 GDTVSAS(ph)PCSAPLAR ddPTM_HeLa_A485_30min_R1 3 GDTVSASPCSAPLAR 15 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 GDTVSAS(0.995)PCS(0.004)APLAR;GDTVSAS(0.993)PCS(0.007)APLAR;GDTVSAS(1)PCSAPLAR ;; 308 8.87E-78 1839470000 1103840 1428830 1617230 1266430 1934440 1276580 1546000 1585100 1451100 1744880 TRUE FALSE FALSE 1349385.4 1595919.239 2215510.676 1335611.864 1741840.361 1343419.755 1215684.47 1196351.74 1742322.46 1309913.528 1.030133189 1.218339383 1.691341167 1.019618345 1.329736905 1.025578961 0.928064673 0.913305889 1.330104944 1 20.32104015 -6.271115433 23.70051735 1.027033339 1.266489215 0.219953332 0.204680559 507.8628575 1243953.746 0.071911844 0.064291214 5.36E-07 6.271115433 0.239455875 GDTVSAS(ph)PCSAPLAR ddPTM_HeLa_A486_30min_R1 3 GDTVSASPCSAPLAR 15 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 GDTVSAS(1)PCSAPLAR;GDTVSAS(1)PCSAPLAR;GDTVSAS(0.998)PCS(0.002)APLAR ;; 319.03 3.57E-78 2815260000 1414880 1819770 1699020 549870 2195970 1577370 1806780 1854330 1512610 1634390 TRUE FALSE FALSE 1315704.218 1675564.798 2356926.045 1280125.149 1920530.966 1382770.127 1354704.534 1432139.539 1643724.253 1225128.106 1.073931952 1.367664973 1.923820076 1.044890851 1.567616445 1.128673908 1.105765615 1.168971254 1.341675409 1 20.22450118 -6.283393487 24.38532213 1.156874682 1.403897162 0.201820418 0.244645444 1011.16568 1123138.571 0.085567965 0.075530853 5.21E-07 6.283393487 0.24702248 GDTVSASPCS(ph)APLAR ddPTM_HeLa_A485_30min_R1 1 GDTVSASPCSAPLAR 15 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 GDTVSAS(0.29)PCS(0.71)APLAR 191.06 3.57E-18 954260000 503110 612760 786320 550530 841320 610020 702020 675170 612120 764370 TRUE FALSE FALSE 615025.0838 684416.9517 1077212.49 580604.0599 757555.2267 641959.7039 552027.692 509583.4989 734966.8693 573826.6262 1.071796002 1.192724284 1.877243823 1.011810943 1.320181379 1.118734605 0.962011288 0.88804436 1.28081695 1 19.13025539 -6.252605688 1.662712645 1.022781687 1.325010452 0.206650537 0.239736901 0.581343959 3.185134998 0.103924283 0.095227166 5.59E-07 6.252605688 0.302228765 GDTVSASPCS(ph)APLAR ddPTM_HeLa_A486_30min_R1 1 GDTVSASPCSAPLAR 15 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 GDTVSAS(0.308)PCS(0.692)APLAR 132.24 1.55E-05 736080000 252220 305360 235850 99942 371430 293320 329450 348800 245730 318170 TRUE FALSE FALSE 234540.6805 281162.1615 327177.4363 232670.0268 324841.786 257133.1607 247018.1254 269385.8543 267030.0743 238498.1611 0.983406662 1.178886077 1.371823727 0.97556319 1.362030569 1.078134773 1.035723397 1.129509146 1.119631586 1 17.86361862 GDVEEDETIPDS(ph)EQDIR ddPTM_HeLa_A486_30min_R1 1 GDVEEDETIPDSEQDIR 17 0 Q92973-3;Q92973-2;Q92973 Q92973-3 TNPO1 Transportin-1 1 0 GDVEEDET(0.154)IPDS(0.846)EQDIR 65.423 0.0098151 339010000 30649 28752 31720 13562 36285 27503 30190 33578 29978 24179 TRUE FALSE FALSE 28500.66337 26473.58681 44002.83349 31573.02139 31733.79696 24109.95949 22636.14268 25933.0224 32576.51718 18124.42102 1.572500624 1.460658345 2.427820091 1.742015447 1.750886107 1.330247154 1.248930526 1.430833149 1.797382501 1 14.14564729 -6.193155014 4.547755657 1.381109874 1.811895366 0.335726966 0.301262064 0.285734571 11.58796074 0.104910171 0.103797035 6.41E-07 6.193155014 0.430785491 GDVEGSQS(ph)QDEGEGSGESER ddPTM_HeLa_A485_30min_R1 2 GDVEGSQSQDEGEGSGESER 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GDVEGSQS(1)QDEGEGSGESER;GDVEGSQS(1)QDEGEGSGESER ; 431.67 2.11E-194 614140000 266420 355320 379900 259620 363710 301440 342050 327120 333350 336370 TRUE FALSE FALSE 325684.2099 396871.5831 520440.819 273802.3832 327497.7553 317222.9323 268968.2232 246893.3071 400250.2873 252519.1494 1.289740642 1.571649453 2.060995454 1.084283643 1.296922455 1.256233173 1.065139906 0.977721126 1.585029445 1 17.94603327 -5.293647978 24.94999868 1.183000209 1.633880825 0.432057244 0.241653832 583.7059955 452159.5053 0.067593081 0.100265604 5.09E-06 5.293647978 0.450880616 GDVEGSQS(ph)QDEGEGSGESER ddPTM_HeLa_A486_30min_R1 1 GDVEGSQSQDEGEGSGESER 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GDVEGSQS(1)QDEGEGSGESER 404.82 6.59E-175 204320000 127420 159530 146140 41170 170750 126840 144610 136520 118520 124070 TRUE FALSE FALSE 118488.516 146888.2618 202729.3218 95845.84062 149332.9428 111191.7704 108427.0485 105437.3762 128793.409 93002.06444 1.274041783 1.579408615 2.179836792 1.03057756 1.605694924 1.195583895 1.165856362 1.133710062 1.384844625 1 16.50497512 -5.898129208 1.244764855 1.181345294 1.616841053 0.271301752 0.288529825 0.604650878 1.970438744 0.12232427 0.153756294 1.26E-06 5.898129208 0.43549576 GDVPTKRPPVLR ddPTM_HeLa_A485_30min_R1 1 GDVPTKRPPVLR 12 2 P62424;Q5T8U2;Q5T8U3 P62424 RPL7A 60S ribosomal protein L7a 0 0 74.76 0.029433 3897300 14636 18427 19381 13283 22344 18537 22265 26483 17851 16975 FALSE FALSE TRUE 17891.72771 20581.87736 26550.83841 14008.61666 20119.35291 19507.56866 17507.90086 19988.00273 21433.53196 12743.4449 1.403994591 1.615095252 2.083489874 1.0992802 1.578800164 1.530792404 1.373875039 1.56849289 1.681926051 1 13.63746771 -10.41308464 3.132739752 0.992056317 1.548737213 0.324583281 0.237330564 42196058.71 52974173.56 2990644.851 0.060260687 3.86E-11 10.41308464 0.556680896 GDVTAEEAAGAS(ph)PAK ddPTM_HeLa_A485_30min_R1 7 GDVTAEEAAGASPAK 15 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK ;;;;;; 311.09 7.39E-78 9046790000 5817342 4578532 3782257 9107830 5433150 4870074 6736830 5300090 4605370 12389090 TRUE FALSE FALSE 7111389.658 5113951.489 5181471.257 9605367.691 4892206.509 5125063.544 5297451.236 4000234.617 5529625.516 9300717.867 0.764606535 0.549844814 0.557104444 1.032755517 0.526003108 0.551039567 0.569574447 0.430099555 0.594537496 1 23.14891064 -10.16357675 5.508441432 1.000008763 0.615974056 0.339646686 0.159094358 1.90E-05 2.89E-06 0.158292646 0.038390658 6.86E-11 10.16357675 -0.384034706 GDVTAEEAAGAS(ph)PAK ddPTM_HeLa_A486_30min_R1 4 GDVTAEEAAGASPAK 15 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK ;;; 306.37 4.00E-68 11458600000 6523930 6884180 3908340 3221850 5599130 7787000 8909400 7682400 6130910 10939200 TRUE FALSE FALSE 6066636.197 6338652.505 5421753.917 7500629.623 4896834.906 6826319.112 6680173.886 5933285.226 6662342.215 8199953.118 0.739837912 0.773010823 0.661193282 0.914716159 0.597178403 0.8324827 0.81466001 0.723575506 0.812485403 1 22.96718423 -14 0.250986237 2.461203559 0.741315612 0.427707125 0.084058667 169.272375 1.678863146 126.7555594 0.113594532 1.00E-14 14 -1.719887947 GDVTAEEAAGAS(ph)PAKANGQENGHVK ddPTM_HeLa_A485_30min_R1 3 GDVTAEEAAGASPAKANGQENGHVK 25 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GDVTAEEAAGAS(1)PAKANGQENGHVK;GDVTAEEAAGAS(1)PAKANGQENGHVK;GDVTAEEAAGAS(1)PAKANGQENGHVK ;; 209.4 5.76E-29 5047080000 1578570 1609790 1090630 2276650 1970460 2088210 3256720 3481850 1425620 3351940 TRUE FALSE FALSE 1929717.45 1798040.937 1494099.422 2401017.625 1774274.084 2197545.447 2560895.167 2627920.828 1711728.857 2516363.046 0.766867664 0.714539557 0.593753522 0.954161852 0.705094635 0.873302225 1.017697018 1.044332944 0.680239229 1 21.26290865 -6.000885405 1.082196541 0.936871906 0.713752117 0.316266398 0.127637186 0.595693815 1.485494687 0.06140147 0.071665776 9.98E-07 6.000885405 -0.223119789 GDVTAEEAAGAS(ph)PAKANGQENGHVK ddPTM_HeLa_A486_30min_R1 2 GDVTAEEAAGASPAKANGQENGHVK 25 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GDVTAEEAAGAS(1)PAKANGQENGHVK;GDVTAEEAAGAS(1)PAKANGQENGHVK ; 178.11 1.13E-15 3807600000 1243830 954990 430090 661230 1060320 1128370 1596330 1400680 699890 1995820 TRUE FALSE FALSE 1156643.94 879313.1144 596632.3662 1539376.857 927324.7785 989163.1818 1196911.35 1081775.741 760557.0287 1496053.681 0.773129972 0.587755055 0.398804116 1.028958303 0.619847262 0.66118161 0.800045723 0.723086179 0.508375494 1 20.51273051 -10.15829469 3.750976899 1.000219549 0.680094982 0.258483399 0.163622691 778754393.1 1230426454 2029317.664 0.040207119 6.95E-11 10.15829469 -0.320124567 GDVVIVLTGWRPGSGFTNTMR ddPTM_HeLa_A485_30min_R1 1 GDVVIVLTGWRPGSGFTNTMR 21 1 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 177.93 3.78E-23 25937000 14194 16103 16592 15276 21185 13470 15791 16654 15167 21885 FALSE FALSE TRUE 17351.40633 17986.10577 22730.07125 16110.4892 19075.74701 14175.26837 12417.12385 12569.58039 18210.87778 16429.47226 1.056114649 1.09474641 1.383493693 0.980584704 1.161068762 0.862795113 0.755783488 0.765062942 1.108427434 1 14.00399852 -6.262881953 24.90983837 0.874815825 1.138158309 0.418592556 0.138117303 114.8830922 1983741.405 0.047421188 0.044073532 5.46E-07 6.262881953 0.263342484 GDY(ph)S(ph)T(ph)KKHVYGNGYSK ddPTM_HeLa_A485_30min_R1 2 GDYSTKKHVYGNGYSK 16 2 Q15223 Q15223 PVRL1 Nectin-1 3 0 GDY(0.993)S(0.993)T(0.993)KKHVY(0.012)GNGY(0.001)S(0.008)K;GDY(0.999)S(0.999)T(0.999)KKHVY(0.002)GNGYS(0.001)K ; 45.704 0.029472 854210000 589330 534570 347890 551510 643250 722910 1036010 1043730 484500 807800 TRUE FALSE FALSE 720424.4253 597083.3114 476588.9879 581637.5948 579205.7714 760760.4498 814658.0001 787753.581 581734.7059 606430.3265 1.187975591 0.984586828 0.785892405 0.959116933 0.955106871 1.254489455 1.343366195 1.299000968 0.959277069 1 19.20998238 -6.254460316 24.01946351 1.200673016 0.963757316 0.300291708 0.146255806 354.1044344 1218702.819 0.049965141 0.048863378 5.57E-07 6.254460316 -0.2369157 GDY(ph)S(ph)T(ph)KKHVYGNGYSK ddPTM_HeLa_A486_30min_R1 1 GDYSTKKHVYGNGYSK 16 2 Q15223 Q15223 PVRL1 Nectin-1 3 0 GDY(0.999)S(0.999)T(0.999)KKHVY(0.002)GNGYS(0.001)K 45.704 0.029472 1103300000 1062200 904900 469780 90142 957820 1140800 1284900 1286600 783230 780050 TRUE FALSE FALSE 987745.2652 833192.4284 651691.3971 209855.1315 837681.2843 1000059.695 963404.4297 993669.2663 851121.007 584720.4027 1.689260817 1.424941604 1.114535074 0.358898254 1.432618531 1.71032119 1.647632655 1.699392157 1.455603401 1 19.15738741 -5.984626689 24.99984712 1.557156436 1.130868842 0.166047232 0.369742947 382.9270483 622706.8846 0.119797021 0.135793573 1.04E-06 5.984626689 -0.426287594 GDYPLEAVR ddPTM_HeLa_A485_30min_R1 2 GDYPLEAVR 9 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 194.22 2.80E-11 141039000 135866 158472 201830 151590 194534 140904 166014 149281 169152 218630 FALSE FALSE TRUE 166088.923 177003.9219 276495.3158 159870.9779 175165.5119 148281.5156 130543.7527 112669.6007 203099.2548 164129.5646 1.011937876 1.078440209 1.684616154 0.974053506 1.067239241 0.903441838 0.795370127 0.686467432 1.237432484 1 17.32447561 -5.489713664 24.77073453 0.931655583 1.255174439 0.293842036 0.216992989 696.5707396 520262.8064 0.061983752 0.09185752 3.24E-06 5.489713664 0.323518856 GDYPLEAVR ddPTM_HeLa_A486_30min_R1 2 GDYPLEAVR 9 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 129.29 0.0021157 160020000 239160 284260 301840 99840 610310 271790 272210 307960 258000 245230 FALSE FALSE TRUE 222396.119 261734.2023 418720.5316 232432.5656 533759.2289 238259.3132 204100.1789 237844.2307 280363.6477 183822.8118 1.20983961 1.423839619 2.277848584 1.264438093 2.90366154 1.296135723 1.110309307 1.293877666 1.525184198 1 17.48795629 -6.480977104 24.99997238 1.249172566 1.82024029 0.255354358 0.487995539 709.4197782 423264.8779 0.169523242 0.149491336 3.30E-07 6.480977104 0.571067725 GEAAAERPGEAAVAS(ph)SPSK ddPTM_HeLa_A485_30min_R1 1 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.499)S(0.499)PS(0.003)K 79.172 0.0013692 1110100000 1072700 955050 948580 1484800 1065500 828550 1009200 779760 942650 1861800 TRUE FALSE FALSE 1311318.414 1066734.79 1299499.216 1565910.864 959415.0788 871931.5968 793576.1756 588522.6374 1131831.209 1397687.524 0.938205709 0.763214074 0.929749457 1.120358333 0.686430309 0.623838721 0.567777963 0.421068821 0.809788446 1 20.41461043 -5.909349408 8.204511082 0.642602195 0.924232335 0.343511682 0.165953437 0.258125677 20.61478355 0.050660364 0.05751992 1.23E-06 5.909349408 0.28163014 GEAAAERPGEAAVAS(ph)SPSK ddPTM_HeLa_A486_30min_R1 5 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.654)S(0.336)PS(0.01)K;GEAAAERPGEAAVAS(0.801)S(0.194)PS(0.005)K;GEAAAERPGEAAVAS(0.626)S(0.319)PS(0.056)K;GEAAAERPGEAAVAS(0.498)S(0.498)PS(0.004)K;GEAAAERPGEAAVAS(0.493)S(0.493)PS(0.014)K ;;;; 260.48 1.87E-58 38733060000 7975540 9181370 5301600 3822440 6739210 9568590 10818870 9649640 7744160 11272800 TRUE FALSE FALSE 7416495.832 8453804.803 7354521.502 8898833.495 5893915.441 8388114.652 8111874.296 7452627.622 8415430.024 8450017.506 0.877689996 1.0004482 0.870355771 1.053114208 0.697503341 0.992674234 0.959983135 0.881965939 0.995906815 1 23.0105229 -7.782116771 22.98094055 0.997953827 0.919176125 0.108627113 0.09286984 249.0248844 276746.6775 0.083777343 0.021774196 1.65E-08 7.782116771 -0.078777702 GEAAAERPGEAAVAS(ph)SPSKANGQENGHVK ddPTM_HeLa_A485_30min_R1 3 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.747)S(0.208)PS(0.046)KANGQENGHVK;GEAAAERPGEAAVAS(0.499)S(0.499)PS(0.003)KANGQENGHVK;GEAAAERPGEAAVAS(0.496)S(0.496)PS(0.008)KANGQENGHVK ;; 102.53 0.00018804 13973420000 1373210 1022800 676863 1649920 1377390 1256520 2046090 1593620 926280 2394640 TRUE FALSE FALSE 1678675.827 1142407.563 927262.7903 1740050.952 1240252.215 1322309.444 1608926.156 1202782.196 1112175.9 1797700.318 0.933790694 0.635482762 0.515804988 0.967931604 0.689910439 0.735556105 0.894991307 0.669067132 0.618665908 1 20.77772111 -5.25574629 24.9982741 0.779912185 0.689071834 0.076067053 0.15432707 1443.504898 6338396.654 0.041778229 0.069795289 5.55E-06 5.25574629 -0.09084035 GEAAAERPGEAAVAS(ph)SPSKANGQENGHVKVNGDASPAAAESGAK ddPTM_HeLa_A485_30min_R1 1 GEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAK 44 3 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.475)S(0.475)PS(0.05)KANGQENGHVKVNGDASPAAAESGAK 74.166 0.0006903 523940000 51012 38765 15156 63106 45180 60466 100760 114470 31045 100140 TRUE FALSE FALSE 62359.44341 43298.22954 20762.83509 66553.32099 40681.72056 63631.90626 79231.80287 86396.05302 37275.44674 75176.94094 0.829502273 0.575950937 0.276186219 0.885289028 0.541146262 0.846428512 1.053937575 1.149236081 0.495836174 1 16.19800259 -6.409684902 4.429202638 0.939016415 0.615551174 0.295371337 0.223488779 0.285780808 9.135039692 0.080858879 0.07013079 3.89E-07 6.409684902 -0.323465241 GEAAAERPGEAAVASS(ph)PSK ddPTM_HeLa_A485_30min_R1 8 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.02)S(0.979)PS(0.001)K;GEAAAERPGEAAVAS(0.007)S(0.992)PS(0.001)K;GEAAAERPGEAAVAS(0.039)S(0.936)PS(0.025)K;GEAAAERPGEAAVAS(0.232)S(0.754)PS(0.015)K;GEAAAERPGEAAVAS(0.048)S(0.927)PS(0.025)K;GEAAAERPGEAAVAS(0.224)S(0.756)PS(0.02)K;GEAAAERPGEAAVAS(0.042)S(0.953)PS(0.004)K;GEAAAERPGEAAVAS(0.045)S(0.941)PS(0.014)K ;;;;;;; 247.75 2.49E-46 49408540000 21843310 14440610 13522450 32226020 17910570 14046130 20393200 12877110 15931240 41019890 TRUE FALSE FALSE 26702278.95 16129313.72 18524966.97 33986445.87 16127330.76 14781563.65 16036026.22 9718978.582 19128493.74 30794386.34 0.867115151 0.523774481 0.60156961 1.103657189 0.523710087 0.480008385 0.520745114 0.315608776 0.621168207 1 24.87616404 -4.247633852 23.06515546 0.613000779 0.86711565 0.081592243 0.228316394 2028.388523 3388691.443 0.057957711 1.032383843 5.65E-05 4.247633852 0.254114871 GEAAAERPGEAAVASS(ph)PSK ddPTM_HeLa_A486_30min_R1 3 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.02)S(0.978)PS(0.002)K;GEAAAERPGEAAVAS(0.135)S(0.864)PS(0.001)K;GEAAAERPGEAAVAS(0.069)S(0.888)PS(0.043)K ;; 215.42 1.39E-28 12841280000 5421810 6500960 3486900 2636680 4831070 6883970 7468710 6778450 4879480 7608640 TRUE FALSE FALSE 5041769.117 5985800.254 4837121.062 6138324.29 4225112.153 6034695.772 5599959.762 5235144.908 5302437.255 5703387.02 0.883995615 1.049516758 0.848113769 1.07625947 0.740807548 1.058089825 0.981865643 0.917901045 0.929699709 1 22.4433875 GEAAAERPGEAAVASS(ph)PSKANGQENGHVK ddPTM_HeLa_A485_30min_R1 3 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.18)S(0.815)PS(0.004)KANGQENGHVK;GEAAAERPGEAAVAS(0.079)S(0.917)PS(0.004)KANGQENGHVK;GEAAAERPGEAAVAS(0.398)S(0.506)PS(0.096)KANGQENGHVK ;; 188.4 5.22E-21 25140800000 1830510 1402540 965770 2327830 1844870 1781090 2752340 2200760 1435700 3546750 TRUE FALSE FALSE 2237700.634 1566554.853 1323048.512 2454993.459 1661188.265 1874345.118 2164280.074 1661020.159 1723831.821 2662610.498 0.840416064 0.588352992 0.496899007 0.922025005 0.623894582 0.703950172 0.812841411 0.623831447 0.647421702 1 21.34440997 -11.07274593 2.316394215 1.453033151 0.692667402 0.35765652 0.122362453 49915534.5 15220070.15 119456705.1 0.0309537 8.46E-12 11.07274593 -0.760365749 GEAAAERPGEAAVASS(ph)PSKANGQENGHVK ddPTM_HeLa_A486_30min_R1 7 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.108)S(0.892)PS(0.001)KANGQENGHVK;GEAAAERPGEAAVAS(0.126)S(0.873)PS(0.001)KANGQENGHVK;GEAAAERPGEAAVAS(0.011)S(0.98)PS(0.009)KANGQENGHVK;GEAAAERPGEAAVAS(0.374)S(0.624)PS(0.002)KANGQENGHVK;GEAAAERPGEAAVAS(0.194)S(0.805)PS(0.002)KANGQENGHVK;GEAAAERPGEAAVAS(0.027)S(0.968)PS(0.004)KANGQENGHVK;GEAAAERPGEAAVAS(0.04)S(0.958)PS(0.001)KANGQENGHVK ;;;;;; 264.56 7.55E-64 62718200000 6790080 5879360 3002900 3111559 5958810 7246390 9696220 8965590 4841490 10081900 TRUE FALSE FALSE 6314130.456 5413458.101 4165703.3 7243866.601 5211400.486 6352404.078 7270123.2 6924320.874 5261154.251 7557326.618 0.835497892 0.716319193 0.551213876 0.958522367 0.68958254 0.840562331 0.961996691 0.916239462 0.696166054 1 22.84944454 -6.122082074 1.187172177 0.886988561 0.730459632 0.20830467 0.124854113 0.758112375 2.221354591 0.059725152 0.061113218 7.55E-07 6.122082074 -0.156528929 GEAAAERPGEAAVASS(ph)PSKANGQENGHVKVNGDASPAAAESGAK ddPTM_HeLa_A486_30min_R1 1 GEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAK 44 3 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.186)S(0.691)PS(0.124)KANGQENGHVKVNGDASPAAAESGAK 251.71 1.01E-53 559850000 75632 47068 20039 33799 55564 57660 105680 97922 32046 131980 TRUE FALSE FALSE 70330.58736 43338.16026 27798.63746 78685.78011 48594.64501 50546.49544 79237.74623 75627.29822 34823.77308 98931.34895 0.710902945 0.438062967 0.280989168 0.795357396 0.491195617 0.510924959 0.800936681 0.764442202 0.351999376 1 16.59414013 -13.99999999 0.200153095 2.901246166 0.506996371 0.320318093 0.181571275 168.6356736 1.668630069 128.5242569 0.437602823 1.00E-14 13.99999999 -2.394249796 GEADRDTYR ddPTM_HeLa_A485_30min_R1 2 GEADRDTYR 9 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ; ; 88.681 0.0048557 1556350000 267130 336000 377700 259160 398390 324670 337300 373670 330310 387210 FALSE FALSE TRUE 326552.1469 375292.2772 517426.9474 273317.2546 358724.8928 341669.2192 265233.0995 282026.8466 396600.1872 290685.6731 1.123385764 1.291058734 1.780022187 0.940250174 1.234064579 1.175390639 0.912439532 0.970212407 1.364360971 1 18.14910044 -5.30145337 24.99976502 1.086760921 1.387446712 0.332145764 0.203153719 604.876221 377910.6435 0.057576104 0.085400359 5.00E-06 5.30145337 0.30068579 GEADRDTYR ddPTM_HeLa_A486_30min_R1 2 GEADRDTYR 9 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ; ; 90.108 0.0045559 1333190000 388560 494680 472730 157821 549810 440520 490850 493340 448750 451010 FALSE FALSE TRUE 361323.9505 455479.7552 655783.7161 367415.2638 480847.703 386173.1213 368034.1383 381017.2515 487648.0113 338074.1604 1.068771272 1.347277635 1.939762907 1.086788956 1.422314271 1.142273402 1.088619544 1.127022695 1.442429113 1 18.36698023 -5.969028114 1.6739601 1.167396748 1.414815545 0.137843714 0.249836674 0.728208681 4.159861412 0.097330442 0.110339193 1.07E-06 5.969028114 0.247418797 GEADRDTYRR ddPTM_HeLa_A485_30min_R1 10 GEADRDTYRR 10 2 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ;;;;;;;;; ;;;;;;;;; 173.07 1.49E-07 7342729000 1072515 1964371 1871176 920017.3 2087114 1888200 2114295 2734395 1584160 1278131 FALSE FALSE TRUE 1311092.262 2194087.101 2563401.869 970275.5155 1879313.602 1987063.232 1662558.601 2063780.339 1902086.381 959516.464 1.366409344 2.286659149 2.671555898 1.011212993 1.958604852 2.070900612 1.732704611 2.150854536 1.982338451 1 19.87194804 -10.21241721 4.865655436 0.999863359 1.928712176 0.278082334 0.441552392 0.00064664 0.000104667 0.422211904 0.102386603 6.13E-11 10.21241721 0.928848817 GEADRDTYRR ddPTM_HeLa_A486_30min_R1 8 GEADRDTYRR 10 2 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ;;;;;;; ;;;;;;; 161.27 4.72E-07 6554139000 2290944 2241223 2533062 841501.7 3251680 1874065 2540359 2596610 1843407 2434943 FALSE FALSE TRUE 2130360.656 2063620.327 3513931.444 1959058.485 2843823.974 1642861.914 1904734.309 2005418.587 2003195.003 1825217.424 1.167181854 1.130616167 1.925212524 1.073328831 1.558074088 0.900091076 1.043565706 1.098728601 1.097510344 1 20.7996369 -6.266769307 24.9970075 1.035123841 1.371799885 0.345014824 0.236127767 541.7325706 2540682.173 0.080908503 0.073411754 5.41E-07 6.266769307 0.336676044 GEAEAPHHGTGHPESAGEHALEPPAPAGASAST(ph)PPPPAPEAQLPPFPR ddPTM_HeLa_A485_30min_R1 1 GEAEAPHHGTGHPESAGEHALEPPAPAGASASTPPPPAPEAQLPPFPR 48 0 Q9H6Z4-2;Q9H6Z4;K7EPW1;K7EMT3 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 GEAEAPHHGTGHPESAGEHALEPPAPAGAS(0.043)AS(0.179)T(0.778)PPPPAPEAQLPPFPR 90.966 5.24E-06 540750000 84671 134550 171900 56121 119730 120260 100650 112670 123510 100930 TRUE FALSE FALSE 103505.7718 150284.4521 235492.9634 59186.74812 107809.2608 126556.6276 79145.30527 85037.50584 148297.3241 75770.00848 1.366052003 1.983429263 3.107997057 0.781136881 1.422848736 1.670273373 1.044546607 1.122310892 1.957203478 1 16.20933929 -5.282553794 24.94203588 1.302289177 2.135586705 0.377218591 0.510056865 826.4881893 976312.0622 0.143867035 0.213634222 5.22E-06 5.282553794 0.833297529 GEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A485_30min_R1 4 GEAEQSEEEADEEDKAEDAR 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(1)EEEADEEDKAEDAR;GEAEQS(1)EEEADEEDKAEDAR;GEAEQS(1)EEEADEEDKAEDAR;GEAEQS(1)EEEADEEDKAEDAR ;;; 257.07 6.24E-59 19346200000 6310040 5989670 2601580 5966230 2332840 4692820 5252130 4432580 2564460 5909070 TRUE FALSE FALSE 7713686.629 6690109.803 3564012.703 6292150.038 2100574.259 4938528.799 4129969.52 3345482.805 3079123.599 4436047.597 1.738864712 1.50812399 0.803420753 1.418413554 0.473523832 1.113272275 0.931002075 0.754158456 0.694114193 1 22.08084341 -4.032607704 0.775388866 0.849399831 2.657246298 0.566578943 0.250490843 2.465020848 0.896434651 0.091561902 4.180384505 9.28E-05 4.032607704 1.807846467 GEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_A486_30min_R1 3 GEAEQSEEEADEEDKAEDAR 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(1)EEEADEEDKAEDAR;GEAEQS(1)EEEADEEDKAEDAR;GEAEQS(1)EEEADEEDKAEDAR ;; 219.95 1.23E-35 12697600000 8233520 6100800 1867590 2368300 2030350 5021960 5351290 4011960 4332710 12160900 TRUE FALSE FALSE 7656392.766 5617350.389 2590770.864 5513522.087 1775684.571 4402401.635 4012340.642 3098524.288 4708272.791 9115731.486 0.839909861 0.61622596 0.284208773 0.604835947 0.194793426 0.482945515 0.440155642 0.339909561 0.516499723 1 23.119927 -8.045021918 21.65018036 1.000000003 0.465266517 0.444366654 0.174705777 1709.817007 822218.4522 0.169505619 0.043766163 9.02E-09 8.045021918 -0.534733487 GEAEQS(ph)EEEADEEDKAEDAREEEYEPEK ddPTM_HeLa_A485_30min_R1 1 GEAEQSEEEADEEDKAEDAREEEYEPEK 28 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(1)EEEADEEDKAEDAREEEYEPEK 341.62 1.77E-127 871930000 943040 403220 387660 1805900 644750 640530 1112800 721690 532090 2083700 TRUE FALSE FALSE 1152815.995 450373.0715 531071.5659 1904551.744 580556.4261 674067.1604 875041.1893 544694.3959 638875.5824 1564271.938 0.736966487 0.287912262 0.339500795 1.217532386 0.37113523 0.430914309 0.559391988 0.34820953 0.408417211 1 20.57705991 -10.45159596 2.770090757 1.014538295 0.519251087 0.228418034 0.263385071 22877218.73 24891102.56 2579865.049 0.069413796 3.54E-11 10.45159596 -0.495287208 GEAEQS(ph)EEEADEEDKAEDAREEEYEPEK ddPTM_HeLa_A486_30min_R1 2 GEAEQSEEEADEEDKAEDAREEEYEPEK 28 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(1)EEEADEEDKAEDAREEEYEPEK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEK ; 223.56 9.28E-39 2272120000 1706940 1684640 466590 1209420 794560 2151100 2495600 1770720 1241640 3914200 TRUE FALSE FALSE 1587292.321 1551142.991 647266.1437 2815590.881 694898.8758 1885719.153 1871174.484 1367565.711 1349266.355 2934058.843 0.540988578 0.52866799 0.22060435 0.959623181 0.236838766 0.642699841 0.637742658 0.466100301 0.459863427 1 21.48446637 -10.87671805 2.541162821 1.232001117 0.522696009 0.340570656 0.199759113 33334422.54 19491548.1 46535820.76 0.047568587 1.33E-11 10.87671805 -0.709305108 GEAEQS(ph)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK ddPTM_HeLa_A485_30min_R1 3 GEAEQSEEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK 41 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK ;; 136.46 3.05E-08 1063283000 540777.9 190221.1 226327.8 2019410 702368 476251.6 1212044 854431 486395.7 2782806 TRUE FALSE FALSE 661072.0782 212465.8029 310055.8715 2129725.255 632437.7758 501187.3974 953080.8979 644880.4576 584010.8555 2089103.678 0.316438138 0.101701895 0.148415742 1.0194445 0.302731637 0.239905469 0.456215222 0.308687627 0.27955092 1 20.99445266 -11.21511073 2.23493367 2.949129945 0.355775742 0.392438181 0.241642419 16390463.36 2928053.476 161579953.8 0.064558968 6.09E-12 11.21511073 -2.593354204 GEAEQS(ph)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK ddPTM_HeLa_A486_30min_R1 7 GEAEQSEEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK 41 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(0.999)EEEADEEDKAEDAREEEYEPEKMEAEDY(0.001)VMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK;GEAEQS(1)EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDK ;;;;;; 232.6 2.12E-41 2611845000 633259.4 638020.6 267472.9 1172632 571430.6 1328889 1981431 1571701 632601.7 1934089 TRUE FALSE FALSE 588871.1862 587461.524 371045.5701 2729946.558 499756.4458 1164944.186 1485656.006 1213858.992 687436.1247 1449780.526 0.406179539 0.405207211 0.255932235 1.883006779 0.344711794 0.803531408 1.024745456 0.837270863 0.47416565 1 20.46740308 GEAERGS(ph)GGS(ph)S(ph)GDELREDDEPVK ddPTM_HeLa_A485_30min_R1 3 GEAERGSGGSSGDELREDDEPVK 23 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 3 0 GEAERGS(1)GGS(1)S(1)GDELREDDEPVK;GEAERGS(1)GGS(1)S(1)GDELREDDEPVK;GEAERGS(1)GGS(1)S(1)GDELREDDEPVK ;; 108.01 0.00023971 5154880000 2710060 2622330 2350230 3823120 2999140 2832480 3497040 2633420 2795450 4900490 TRUE FALSE FALSE 3312903.497 2928988.682 3219677.878 4031967.365 2700535.091 2980784.273 2749868.836 1987569.616 3356471.174 3678888.03 0.900517621 0.79616141 0.875176915 1.095974472 0.734062866 0.810240553 0.747472827 0.540263688 0.912360242 1 21.81083834 GEAERGS(ph)GGS(ph)S(ph)GDELREDDEPVK ddPTM_HeLa_A486_30min_R1 4 GEAERGSGGSSGDELREDDEPVK 23 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 3 0 GEAERGS(1)GGS(1)S(1)GDELREDDEPVK;GEAERGS(1)GGS(1)S(1)GDELREDDEPVK;GEAERGS(1)GGS(1)S(1)GDELREDDEPVK;GEAERGS(1)GGS(1)S(1)GDELREDDEPVK ;;; 132.42 2.16E-06 6852030000 4239690 4465720 2653310 1889430 3726760 4561170 4985420 4571710 3628260 5359540 TRUE FALSE FALSE 3942509.625 4111840.083 3680742.69 4398688.527 3259315.01 3998459.22 3738015.186 3530831.433 3942760.498 4017476.299 0.981339859 1.023488324 0.916182801 1.094888482 0.811284191 0.995266412 0.93043864 0.878868018 0.981402304 1 21.93785808 -5.749596375 24.99997725 0.92981757 0.999097775 0.208509854 0.067437042 357.3505494 754344.7882 0.018738302 0.023997967 1.78E-06 5.749596375 0.069280205 GEAVLRPGLDAEPELS(ph)PEEQR ddPTM_HeLa_A485_30min_R1 2 GEAVLRPGLDAEPELSPEEQR 21 1 C9JQV0;Q9BRJ6 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 0 GEAVLRPGLDAEPELS(1)PEEQR;GEAVLRPGLDAEPELS(1)PEEQR ; 256.01 4.27E-59 533540000 336560 401920 417190 330510 428340 340900 387800 383240 384860 504620 TRUE FALSE FALSE 411426.6109 448921.0478 571525.9417 348564.9244 385692.9656 358748.9969 304943.362 289249.7891 462097.8719 378827.5208 1.086052592 1.185027547 1.508670596 0.920115106 1.018122878 0.946998244 0.804966232 0.763539535 1.219810722 1 18.53118162 -5.296336668 24.6022873 0.939761817 1.252428032 0.453825149 0.15353921 425.6404586 300071.9314 0.043540747 0.064584813 5.05E-06 5.296336668 0.312666216 GEAVLRPGLDAEPELS(ph)PEEQR ddPTM_HeLa_A486_30min_R1 2 GEAVLRPGLDAEPELSPEEQR 21 1 C9JQV0;Q9BRJ6 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 0 GEAVLRPGLDAEPELS(1)PEEQR;GEAVLRPGLDAEPELS(1)PEEQR ; 199.46 1.00E-26 537250000 427680 529760 497220 137776 538670 453340 462160 470550 458310 481730 TRUE FALSE FALSE 397701.8405 487779.8882 689756.9 320749.4908 471104.9857 397411.52 346522.6798 363416.037 498036.6798 361101.6725 1.101356961 1.350810382 1.910145958 0.888252576 1.304632522 1.100552975 0.95962635 1.006409177 1.379214548 1 18.46204558 -5.294784171 24.99881676 1.095303577 1.443775563 0.335778667 0.233689898 729.1411195 546640.4314 0.065772973 0.097563622 5.07E-06 5.294784171 0.348471986 GEDAEES(ph)LEEEEALDPLGIMR ddPTM_HeLa_A485_30min_R1 1 GEDAEESLEEEEALDPLGIMR 21 0 H7BZZ1;F6TR53;Q53T59 H7BZZ1 HS1BP3 HCLS1-binding protein 3 1 0 GEDAEES(1)LEEEEALDPLGIMR 184.38 2.50E-19 32017000 18006 22115 24393 20632 23350 23802 21025 22584 21929 31571 TRUE FALSE FALSE 22011.37258 24701.15688 33416.98578 21759.07392 21025.19201 25048.23592 16532.83699 17045.23859 26329.94916 23700.93072 0.928713426 1.042201978 1.40994403 0.918068331 0.887104066 1.056846088 0.697560665 0.719180136 1.110924692 1 14.53265609 -5.484519741 24.97751658 0.895163831 1.12606612 0.252391469 0.167431987 716.3850585 466474.7475 0.047888861 0.071013644 3.28E-06 5.484519741 0.230902289 GEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_HeLa_A485_30min_R1 1 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 41 1 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 GEDS(0.458)AEET(0.542)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 188.69 2.81E-22 315830000 610380 362200 239400 787460 391410 452250 667240 477640 348640 993210 TRUE FALSE FALSE 746156.9252 404556.1393 327964.0223 830476.9458 352439.8461 475929.1107 524678.7232 360498.0411 418608.8501 745621.0257 1.000718729 0.542576088 0.439853506 1.113805697 0.472679597 0.63829894 0.703680161 0.483486957 0.561423076 1 19.50808302 -10.22926725 5.262771476 1.000030329 0.654822036 0.181210246 0.215182763 7.41E-05 1.09E-05 0.201600245 0.048890952 5.90E-11 10.22926725 -0.345208293 GEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_HeLa_A486_30min_R1 1 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 41 1 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 GEDS(0.474)AEET(0.526)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 111.23 1.70E-06 256220000 516400 532100 194350 203060 325040 582320 646640 548780 441550 766290 TRUE FALSE FALSE 480203.0267 489934.4581 269607.5249 472733.9421 284270.4523 510479.279 484843.8325 423834.7738 479823.9095 574405.9963 0.835999328 0.852941058 0.469367532 0.822996182 0.494894646 0.88870813 0.844078641 0.737866207 0.835339312 1 19.13171128 GEDVNRT(ph)LEGGR ddPTM_HeLa_A486_30min_R1 1 GEDVNRTLEGGR 12 1 P58546 P58546 MTPN Myotrophin 1 0 GEDVNRT(1)LEGGR 112.34 0.00033629 0 111150 114940 140800 50999 162230 140670 136080 132810 108300 102220 TRUE FALSE FALSE 103358.959 105831.7358 195321.5308 118728.2493 141881.6007 123315.5656 102031.3447 102572.0622 117687.5312 76623.44666 1.348920774 1.381192578 2.549109173 1.549502855 1.851673435 1.609371165 1.331594298 1.338651114 1.535920613 1 16.2254983 -6.643055279 3.224585808 1.326092816 1.750953085 0.268886596 0.33736595 0.372864667 7.686682096 0.143645132 0.106404897 2.27E-07 6.643055279 0.424860269 GEDVPS(ph)EEEEEEENGFEDR ddPTM_HeLa_A485_30min_R1 2 GEDVPSEEEEEEENGFEDR 19 0 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 GEDVPS(1)EEEEEEENGFEDR;GEDVPS(1)EEEEEEENGFEDR ; 375.8 3.29E-130 5187700000 86018 112322 118220 89720 129888 86948 132989 82319 92056 148284 TRUE FALSE FALSE 105152.4073 125457.0808 161954.4975 94621.17642 116955.8947 91500.46283 104574.8137 62130.13618 110530.7948 111319.5278 0.944599833 1.126999758 1.454861522 0.849996207 1.050632328 0.82196237 0.939411223 0.558124324 0.992914694 1 16.76434717 -5.308735673 24.99532167 0.875385481 1.170638647 0.364093522 0.17380637 407.2589689 215228.8666 0.049022641 0.072712485 4.91E-06 5.308735673 0.295253166 GEDVPS(ph)EEEEEEENGFEDR ddPTM_HeLa_A486_30min_R1 2 GEDVPSEEEEEEENGFEDR 19 0 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 GEDVPS(1)EEEEEEENGFEDR;GEDVPS(1)EEEEEEENGFEDR ; 436.54 9.91E-184 6597400000 155155 165178 143694 12473 147775 138463 152265 89422 136125 144887 TRUE FALSE FALSE 144279.4357 152088.6937 199336.1651 29037.77435 129239.6816 121380.8428 114166.6865 69062.56267 147924.4246 108606.3521 1.32846222 1.400366468 1.835400611 0.267367182 1.189982713 1.117621948 1.051197138 0.635898005 1.362023691 1 16.72874896 -5.234761105 24.9988969 0.952790342 1.509305391 0.413545894 0.313679852 749.6471136 702456.5201 0.082339761 0.142565267 5.82E-06 5.234761105 0.556515049 GEDVPS(ph)EEEEEEENGFEDRKDDS(ph)DDDGGGWITPSNIK ddPTM_HeLa_A486_30min_R1 1 GEDVPSEEEEEEENGFEDRKDDSDDDGGGWITPSNIK 37 2 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 2 0 GEDVPS(1)EEEEEEENGFEDRKDDS(1)DDDGGGWITPSNIK 211.81 3.42E-30 635200000 198860 172630 92758 166940 139520 261750 338860 338200 130170 420260 TRUE FALSE FALSE 184920.9409 158950.1701 128676.3817 388644.7567 122020.1006 229457.9463 254073.6439 261199.2429 141453.2404 315024.1606 0.587005583 0.504565014 0.408465121 1.233698253 0.38733569 0.728382058 0.806521136 0.82914035 0.449023466 1 18.26510295 -14 0.044782456 2.198112464 5.27E-13 0.139041341 0.245481831 1428.93372 4.747717054 224.6559765 58.50498596 1.00E-14 14 -2.198112464 GEEGS(ph)DDDETENGPKPK ddPTM_HeLa_A485_30min_R1 7 GEEGSDDDETENGPKPK 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK ;;;;;; 289.72 1.48E-68 23074040000 6769190 3941020 2749322 12760810 5668110 4930050 9147640 6941580 4336120 15455900 TRUE FALSE FALSE 8274972.962 4401888.007 3766410.617 13457900.74 5103773.066 5188179.795 7193171.985 5239146.621 5206339.511 11603028.57 0.71317354 0.379374056 0.324605821 1.159861036 0.439865595 0.447140138 0.619939177 0.451532683 0.448705222 1 23.46799809 -10.18229009 4.297981654 1.000134305 0.552203244 0.254100358 0.229330004 155954357.1 54.50633039 211375.305 0.055353833 6.57E-11 10.18229009 -0.447931061 GEEGS(ph)DDDETENGPKPK ddPTM_HeLa_A486_30min_R1 7 GEEGSDDDETENGPKPK 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 GEEGS(0.998)DDDET(0.002)ENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(0.998)DDDET(0.002)ENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(0.999)DDDET(0.001)ENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK ;;;;;; 316.44 1.56E-79 20659990000 5952590 5835910 2062823 3917132 4167970 7731080 9948670 8324020 4739030 11525150 TRUE FALSE FALSE 5535344.18 5373451.238 2861603.31 9119281.257 3645184.338 6777297.953 7459407.54 6428822.358 5149812.936 8639177.424 0.640725836 0.621986443 0.331235622 1.055572864 0.421936506 0.784484173 0.863439558 0.744147509 0.596099916 1 23.04246252 -13.99999995 0.079693155 2.024759059 0.362538802 0.219913366 0.194625791 388.9046924 2.191370647 70.81817169 6.655844684 1.00E-14 13.99999995 -1.662220256 GEEGVGEERPVKGHS(ph)PFTLRPK ddPTM_HeLa_A485_30min_R1 1 GEEGVGEERPVKGHSPFTLRPK 22 3 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 GEEGVGEERPVKGHS(0.94)PFT(0.06)LRPK 85.423 0.0021145 275980000 125850 143920 83950 115090 166180 174680 221530 264760 110210 159870 TRUE FALSE FALSE 153844.8983 160750.1921 115006.5985 121377.0753 149634.5357 183825.9747 174198.3058 199827.1949 132328.1361 120017.3512 1.281855472 1.339391267 0.958249764 1.011329396 1.246774189 1.531661655 1.451442679 1.664985878 1.102575043 1 16.87288347 -6.007496486 22.86732642 1.397047838 1.145513843 0.152267652 0.211301321 169.5096454 517080.0085 0.066559124 0.072267073 9.83E-07 6.007496486 -0.251533994 GEEHCGHLIEAHK ddPTM_HeLa_A486_30min_R1 1 GEEHCGHLIEAHK 13 0 H7C4E5;C9J8T6;Q14061 H7C4E5 COX17 Cytochrome c oxidase copper chaperone 0 0 128.54 1.28E-05 33522000 47096 49501 40793 21003 49224 52423 52296 52592 45055 58556 FALSE FALSE TRUE 43794.8136 45578.36048 56589.14207 48896.04543 43049.86692 45955.58326 39210.98767 40617.94968 48960.40368 43893.19646 0.997758585 1.038392374 1.289246321 1.113977777 0.980786782 1.04698648 0.893327231 0.925381447 1.115444024 1 15.42170972 -5.758447739 23.13171497 0.987573644 1.11755462 0.278030955 0.091071421 39.17172001 302871.7331 0.028611476 0.035290316 1.74E-06 5.758447739 0.129980976 GEEQEQS(ph)ETEEGPPGSSDALFGHQFPSEETTGPLLDPPPEESK ddPTM_HeLa_A486_30min_R1 1 GEEQEQSETEEGPPGSSDALFGHQFPSEETTGPLLDPPPEESK 43 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GEEQEQS(0.49)ET(0.49)EEGPPGS(0.008)S(0.008)DALFGHQFPS(0.002)EETTGPLLDPPPEESK 84.266 0.00011177 29058000 29669 27479 20382 4738.7 27883 30436 30924 32731 24871 33881 TRUE FALSE FALSE 27589.35631 25301.46396 28274.45625 11031.93308 24385.65414 26681.11577 23186.48812 25278.86581 27026.83831 25396.97707 1.086324417 0.996239194 1.113300066 0.434379771 0.960179397 1.050562659 0.912962517 0.995349397 1.064175403 1 14.63236917 -7.441845622 3.896453241 1.032513811 0.931557489 0.044787421 0.180518056 0.853782592 23.97075582 0.119271815 0.050158186 3.62E-08 7.441845622 -0.100956321 GEES(ph)S(ph)EEEEK ddPTM_HeLa_A485_30min_R1 2 GEESSEEEEK 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 GEES(1)S(1)EEEEK;GEES(1)S(1)EEEEK ; 142.97 1.28E-05 1001630000 1820750 1615940 944610 2977810 1376710 1465270 2070030 1669530 1144710 3230180 TRUE FALSE FALSE 2225769.556 1804910.126 1294060.548 3140480.22 1239639.918 1541989.271 1627751.18 1260075.15 1374442.797 2424955.573 0.917859931 0.744306472 0.533642992 1.295067116 0.511201084 0.635883514 0.671249898 0.519628138 0.566790919 1 21.20952689 GEES(ph)S(ph)EEEEK ddPTM_HeLa_A486_30min_R1 1 GEESSEEEEK 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 GEES(1)S(1)EEEEK 142.97 1.28E-05 390520000 1243500 1172200 475740 680070 699300 1321600 1473900 1197100 980960 2317800 TRUE FALSE FALSE 1156337.071 1079310.603 659959.2688 1583237.329 611587.2733 1158554.429 1105114.631 924546.4625 1065990.403 1737407.794 0.665553059 0.621218926 0.379852831 0.911264088 0.352011356 0.666829304 0.636070953 0.532141312 0.613552216 1 20.72850498 -8.062998445 20.56694355 1.000000001 0.593992706 0.396900828 0.148941426 3012.199818 983385.8944 0.133117639 0.034370827 8.65E-09 8.062998445 -0.406007295 GEES(ph)S(ph)EEEEKGYK ddPTM_HeLa_A485_30min_R1 3 GEESSEEEEKGYK 13 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 GEES(1)S(1)EEEEKGYK;GEES(0.999)S(1)EEEEKGY(0.001)K;GEES(1)S(1)EEEEKGYK ;; 112.24 0.0011258 3263040000 2071590 1302210 995827 4648550 2163440 1915660 3435860 2599190 1588720 5823510 TRUE FALSE FALSE 2532408.049 1454492.132 1364224.847 4902488.516 1948040.317 2015960.995 2701760.443 1961734.577 1907561.531 4371816.131 0.579257675 0.332697462 0.312049914 1.121384882 0.445590633 0.461126666 0.617994985 0.448723029 0.436331601 1 22.05980129 -10.3170543 5.250891353 1.000122019 0.529559944 0.29712706 0.217617306 0.000314258 4.09E-05 0.213012917 0.051649938 4.82E-11 10.3170543 -0.470562075 GEES(ph)S(ph)EEEEKGYK ddPTM_HeLa_A486_30min_R1 5 GEESSEEEEKGYK 13 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 GEES(1)S(1)EEEEKGYK;GEES(0.999)S(1)EEEEKGY(0.001)K;GEES(1)S(1)EEEEKGYK;GEES(1)S(1)EEEEKGYK;GEES(1)S(1)EEEEKGYK ;;;; 157.38 3.76E-07 4165600000 7172380 6921380 2538240 6326280 5437130 9942270 13959480 11897540 5370540 16811860 TRUE FALSE FALSE 6669633.2 6372904.642 3521114.504 14727899.55 4755154.456 8715693.813 10466670.46 9188729.863 5836062.731 12602060.83 0.529249405 0.505703371 0.279407833 1.168689768 0.377331495 0.691608613 0.830552288 0.729145017 0.463103838 1 23.58715634 -14 0.052911188 2.290398355 1.17E-14 0.189308718 0.24052104 876.65691 3.411235895 159.4803744 32.66655219 1.00E-14 14 -2.290398355 GEFS(ph)AS(ph)PMLK ddPTM_HeLa_A485_30min_R1 1 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GEFS(1)AS(1)PMLK 93.258 0.0057245 35709000 151550 162720 139660 208110 234680 189770 255570 294280 178660 270870 TRUE FALSE FALSE 185261.7747 181748.6885 191326.0457 219478.5223 211314.4352 199706.0638 200965.3817 222107.3686 214515.4232 203347.094 0.911061825 0.893785522 0.940884091 1.079329525 1.039180994 0.982094506 0.988287453 1.092257402 1.054922492 1 17.63358485 -5.088845884 4.711899233 1.033397227 0.905099411 0.714367727 0.03482812 0.12166673 4.59051572 0.010304076 0.018787329 8.15E-06 5.088845884 -0.128297816 GEFS(ph)AS(ph)PMLK ddPTM_HeLa_A486_30min_R1 1 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GEFS(1)AS(1)PMLK 105.17 0.002042 40922000 212930 245590 130670 108500 241150 256920 311680 295400 189340 289490 TRUE FALSE FALSE 198004.7066 226128.554 181268.9235 252593.4833 210902.7184 225223.8226 233694.3674 228143.8685 205752.1436 216999.8197 0.912464844 1.042067935 0.835341355 1.164026236 0.971902735 1.037898662 1.076933463 1.051355106 0.948167348 1 17.72733432 -5.253642828 24.99951529 1.037039193 0.941169048 0.301168006 0.073239226 785.7571359 2519511.509 0.018957158 0.032044672 5.58E-06 5.253642828 -0.095870146 GEFSAS(ph)PMLK ddPTM_HeLa_A485_30min_R1 11 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEFSAS(1)PMLK;GEFS(0.001)AS(0.999)PMLK;GEFS(0.038)AS(0.962)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFS(0.001)AS(0.999)PMLK;GEFS(0.001)AS(0.999)PMLK ;;;;;;;;;; 252.69 2.83E-26 47785380000 21280370 23454090 20445540 25179390 29129390 25844090 33272660 35419410 21051720 32115490 TRUE FALSE FALSE 26014114.89 26196841.8 28009196.06 26554876.32 26229165.65 27197246.59 26163684.38 26732744.16 25276607.11 24109689.38 1.078990047 1.08656903 1.161740229 1.101419263 1.087909729 1.128062919 1.085193756 1.108796706 1.048400363 1 24.52310973 -7.966029695 2.625433473 1.000098964 1.105953169 0.67381692 0.023585062 0.147781691 2.313088907 0.02279987 0.006196199 1.08E-08 7.966029695 0.105854205 GEFSAS(ph)PMLK ddPTM_HeLa_A486_30min_R1 17 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEFS(0.037)AS(0.963)PMLK;GEFSAS(1)PMLK;GEFS(0.019)AS(0.981)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFSAS(1)PMLK;GEFS(0.012)AS(0.988)PMLK;GEFS(0.025)AS(0.975)PMLK;GEFS(0.004)AS(0.996)PMLK;GEFS(0.001)AS(0.999)PMLK;GEFS(0.2)AS(0.8)PMLK;GEFS(0.009)AS(0.991)PMLK;GEFS(0.145)AS(0.855)PMLK ;;;;;;;;;;;;;;;; 248.69 2.09E-21 60179650000 40466870 41536810 29706910 15068970 45607470 42257770 48633850 47880210 33010840 47634010 TRUE FALSE FALSE 37630351.38 38245281.9 41210221.13 35081323.7 39886955.84 37044435.98 36465146.33 36978931.4 35872246.19 35706143.85 1.053890096 1.071112077 1.154149306 0.982501047 1.117089429 1.037480724 1.021256916 1.035646178 1.004651926 1 25.089669 -6.772170791 0.730357204 1.002589311 1.080191395 0.302154794 0.042645705 0.88027383 0.92655361 0.035144075 0.022182503 1.69E-07 6.772170791 0.077602084 GEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_HeLa_A485_30min_R1 2 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GEGDAPFSEPGTTSTQRPS(0.959)S(0.878)PET(0.156)AT(0.006)K;GEGDAPFS(0.001)EPGT(0.007)T(0.007)S(0.008)T(0.009)QRPS(0.954)S(0.959)PET(0.053)AT(0.002)K ; 110.4 0.00045402 914840000 627980 599010 566190 871700 725180 593130 763780 577780 643510 1138110 TRUE FALSE FALSE 767671.9845 669059.0088 775647.2421 919318.7637 652978.5329 624185.3696 600592.1635 436078.5491 772656.5544 854400.1224 0.898492363 0.78307457 0.907826698 1.075981545 0.764253791 0.730553933 0.702940166 0.510391487 0.904326362 1 19.70455233 -5.971493122 24.92261695 0.736265247 0.907953988 0.193302296 0.139240928 284.0000621 248290.4754 0.042504389 0.048194735 1.07E-06 5.971493122 0.171688741 GEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_HeLa_A486_30min_R1 2 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GEGDAPFSEPGTTSTQRPS(0.995)S(0.982)PET(0.022)AT(0.001)K;GEGDAPFSEPGTTST(0.001)QRPS(0.998)S(0.997)PET(0.004)ATK ; 130.25 7.18E-06 1150750000 667520 758360 468090 260220 667610 829250 872520 824460 652350 870710 TRUE FALSE FALSE 620730.2951 698264.7917 649346.9839 605805.3108 583872.1286 726945.5662 654206.2674 636748.4558 708896.2232 652678.5486 0.951050554 1.069844862 0.99489555 0.928183272 0.894578395 1.113788047 1.002340691 0.975592743 1.086133786 1 19.3160131 -6.259268377 24.9999392 1.0319687 0.972698981 0.254383408 0.057610304 354.7445644 4085036.137 0.020460253 0.019549875 5.50E-07 6.259268377 -0.059269719 GEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_HeLa_A485_30min_R1 2 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFSEPGTTS(0.001)T(0.004)QRPS(0.586)S(0.407)PET(0.002)ATK;GEGDAPFSEPGT(0.004)T(0.004)S(0.021)T(0.021)QRPS(0.466)S(0.466)PET(0.014)AT(0.001)K ; 167.07 4.22E-14 7935870000 648250 502890 529900 861400 723680 592530 796430 591240 652850 1110900 TRUE FALSE FALSE 792450.9761 561698.6109 725932.061 908456.1008 651627.8782 623553.9546 626266.2243 446237.463 783871.0067 833973.0746 0.950211704 0.673521278 0.870450238 1.089311068 0.781353617 0.747690751 0.750942978 0.535074185 0.939923639 1 19.66964128 -5.969729454 24.96391365 0.763108471 0.88531995 0.08108006 0.151878123 429.1003747 353874.2808 0.046770932 0.053032726 1.07E-06 5.969729454 0.122211479 GEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_HeLa_A486_30min_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFSEPGTTS(0.001)T(0.007)QRPS(0.495)S(0.495)PET(0.001)ATK 101.41 0.00063474 9257100000 408050 416250 241910 142310 376830 388490 409500 411640 302120 417660 TRUE FALSE FALSE 379447.8022 383264.834 335584.0306 331304.8719 329564.4676 340562.0537 307038.7688 317918.558 328308.0049 313075.2175 1.21200204 1.2241941 1.071895863 1.058227715 1.052668653 1.08779627 0.980718855 1.015470214 1.04865536 1 18.25614979 -4.829207605 3.47106058 1.037535706 1.222034665 0.855259198 0.029648928 0.08132861 1.937256401 0.008436868 0.021199271 1.48E-05 4.829207605 0.184498959 GEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_HeLa_A485_30min_R1 3 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFSEPGTTST(0.001)QRPS(0.255)S(0.744)PETATK;GEGDAPFSEPGTTSTQRPS(0.108)S(0.892)PETATK;GEGDAPFSEPGTTSTQRPS(0.061)S(0.934)PET(0.005)ATK ;; 251.8 5.08E-51 20210700000 3742520 3244680 3267300 5015660 4230810 3387010 4493040 3425230 3555030 6560500 TRUE FALSE FALSE 4575030.662 3624117.101 4476010.234 5289652.805 3809575.701 3564348.606 3533065.299 2585186.972 4268491.912 4925088.087 0.928923622 0.735848179 0.90881831 1.074021969 0.773504074 0.723712661 0.717360834 0.524901672 0.866683364 1 22.2317181 -5.978658183 24.77315367 0.73541412 0.902189358 0.190592959 0.137829654 306.2428931 355478.6354 0.042228863 0.04787882 1.05E-06 5.978658183 0.166775238 GEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_HeLa_A486_30min_R1 6 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFSEPGT(0.015)T(0.015)S(0.074)T(0.074)QRPS(0.318)S(0.503)PET(0.002)ATK;GEGDAPFSEPGTTSTQRPS(0.087)S(0.912)PETATK;GEGDAPFSEPGTTS(0.003)T(0.002)QRPS(0.045)S(0.951)PETATK;GEGDAPFSEPGTTSTQRPS(0.053)S(0.946)PETATK;GEGDAPFSEPGTT(0.001)S(0.004)T(0.021)QRPS(0.189)S(0.766)PET(0.019)AT(0.001)K;GEGDAPFSEPGTTS(0.011)T(0.008)QRPS(0.145)S(0.809)PET(0.025)AT(0.002)K ;;;;; 235.42 1.33E-49 25504940000 3541840 3871730 2525240 1283070 3683150 4300930 4594790 4439370 3287820 4269540 TRUE FALSE FALSE 3293575.306 3564920.014 3503080.556 2987051.803 3221174.983 3770324.985 3445124.943 3428622.362 3572810.885 3200419.394 1.029107408 1.113891517 1.094569219 0.933331365 1.006485272 1.178072159 1.076460463 1.071304082 1.116357091 1 21.60982954 GEGDIHENVDTDLPGS(ph)LGQSEEKPVPAAPVPSPVAPAPVPSR ddPTM_HeLa_A486_30min_R1 1 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76;Q9UK76-3 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGS(0.997)LGQS(0.003)EEKPVPAAPVPSPVAPAPVPSR 237.91 2.11E-52 226720000 158500 147780 80926 44768 106120 141380 130430 116380 115260 149150 TRUE FALSE FALSE 147389.9685 136069.3746 112262.7145 104222.1664 92809.44007 123937.973 97795.03445 89882.81456 125250.8296 111801.8692 1.318313992 1.217058137 1.004121982 0.93220415 0.830124225 1.108550098 0.874717347 0.803947333 1.120292805 1 16.77058478 -4.715829792 2.376722029 0.942896079 1.312286248 0.614888071 0.099662124 0.190761498 2.066702516 0.026666645 0.098009811 1.92E-05 4.715829792 0.369390169 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSR ddPTM_HeLa_A485_30min_R1 1 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76;Q9UK76-3 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(1)PVAPAPVPSR 104.86 1.11E-06 465200000 21202 14833 16291 24971 22932 18640 18906 11031 16249 27451 TRUE FALSE FALSE 25918.31175 16567.59032 22317.71883 26335.1025 20648.80956 19615.96158 14866.57865 8325.629954 19510.02526 20607.9709 1.257683829 0.803940883 1.08296537 1.277908564 1.001981693 0.951862834 0.721399439 0.404000471 0.946722283 1 14.33091484 -6.575809492 2.672908457 0.718285239 1.077993625 0.356311152 0.195954142 0.278079641 4.033343603 0.081704364 0.062050392 2.66E-07 6.575809492 0.359708386 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSR ddPTM_HeLa_A486_30min_R1 2 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76;Q9UK76-3 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(1)PVAPAPVPSR;GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(1)PVAPAPVPSR ; 234.17 2.66E-52 6610100000 139917 162801 92362 48723 139619 152862 163180 153255 130504 162699 TRUE FALSE FALSE 130109.5408 149900.0558 128127.0399 113429.6063 122106.6831 134003.4406 122350.6381 118362.182 141816.1918 121958.1114 1.066837944 1.229110997 1.050582355 0.93007021 1.001218219 1.098766118 1.003218537 0.970515045 1.162827057 1 16.89602619 -4.938806928 8.687175893 1.021341131 1.146876156 0.318177751 0.071616892 0.312225579 40.30747637 0.018229571 0.038099729 1.15E-05 4.938806928 0.125535024 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSRR ddPTM_HeLa_A485_30min_R1 2 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRR 43 2 Q9UK76;Q9UK76-3 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGS(0.006)LGQS(0.006)EEKPVPAAPVPS(0.984)PVAPAPVPS(0.004)RR;GEGDIHENVDTDLPGS(0.001)LGQS(0.001)EEKPVPAAPVPS(0.997)PVAPAPVPSRR ; 106.5 6.03E-07 1761720000 123522 160096 105663 96080 147010 145043 150577 167662 107019 138564 TRUE FALSE FALSE 150999.0428 178817.8345 144752.1407 101328.6071 132373.1682 152637.2272 118404.9938 126542.6316 128496.7317 104022.5449 1.451599198 1.719029608 1.391545851 0.974102366 1.272543066 1.467347558 1.138262806 1.216492365 1.235277716 1 16.66653671 -1 0.259589639 1.116484814 4.389225292 0.399697126 0.167514348 54.38565957 0.74997976 0.217639345 78.71572812 0.1 1 3.272740479 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSRR ddPTM_HeLa_A486_30min_R1 2 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRR 43 2 Q9UK76;Q9UK76-3 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(0.672)PVAPAPVPS(0.328)RR;GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(0.996)PVAPAPVPS(0.004)RR ; 289.83 3.51E-95 3323500000 520822 481688 336705 213953 467220 427024 484928 525052 320910 597612 TRUE FALSE FALSE 484315.0673 443517.2886 467086.1933 498093.3966 408616.9109 374342.1205 363593.8854 405509.1214 348726.7372 447966.0654 1.081142311 0.990068942 1.04268209 1.11189984 0.912160412 0.835648388 0.811654974 0.905222857 0.778466862 1 18.77302992 -5.914627574 5.012545133 0.858394043 1.049821164 0.669140045 0.063294691 0.117671691 5.111378919 0.018995698 0.021624445 1.22E-06 5.914627574 0.191427121 GEGES(ph)PQAR ddPTM_HeLa_A485_30min_R1 2 GEGESPQAR 9 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 GEGES(1)PQAR;GEGES(1)PQAR ; 194.43 6.51E-09 1131120000 1103730 1715130 1122370 1338700 1284910 1329970 1487260 1955640 1586600 1739490 TRUE FALSE FALSE 1349250.931 1915699.534 1537581.369 1411829.791 1156979.849 1399605.173 1169494.751 1476016.224 1905016.067 1305867.156 1.033222196 1.466994192 1.177440877 1.081143503 0.88598587 1.0717822 0.895569466 1.130295847 1.458813064 1 20.31657671 -2.576883652 6.674042782 1.119804267 0.943383456 0 0.192224463 0 0 0.045706646 0 0.00264921 2.576883652 -0.176420811 GEGES(ph)PQAR ddPTM_HeLa_A486_30min_R1 2 GEGESPQAR 9 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 GEGES(1)PQAR;GEGES(1)PQAR ; 150.09 7.19E-05 679700000 1205990 825370 1243860 412030 1066500 1436750 1079310 1002210 1341630 1331850 TRUE FALSE FALSE 1121456.329 759964.6753 1725515.904 959226.6628 932729.6253 1259498.393 809255.2222 774028.6611 1457923.569 998346.0911 1.123314188 0.76122367 1.728374478 0.960815765 0.934274831 1.261584939 0.810595874 0.775310955 1.460338836 1 19.92918051 GEGIRT(ph)PLEK ddPTM_HeLa_A486_30min_R1 2 GEGIRTPLEK 10 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 GEGIRT(1)PLEK;GEGIRT(1)PLEK ; 65.043 0.013795 154200000 901080 983160 525290 259710 654250 859730 832870 725590 765680 1163400 TRUE FALSE FALSE 837918.9452 905250.821 728696.3558 604618.005 572187.8644 753665.2537 624477.1168 560388.9965 832049.7589 872077.0675 0.960831303 1.038039933 0.835587109 0.693307997 0.656120755 0.864218636 0.716080195 0.642591139 0.95410118 1 19.73409611 -4.894478046 4.493981144 0.76873149 0.997603942 0.320882996 0.11728349 0.204220435 7.079541433 0.029767721 0.066036487 1.28E-05 4.894478046 0.228872451 GEGPGEAGGPLT(ph)PR ddPTM_HeLa_A485_30min_R1 2 GEGPGEAGGPLTPR 14 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 GEGPGEAGGPLT(1)PR;GEGPGEAGGPLT(1)PR ; 149.37 3.02E-07 1612520000 547760 762000 822290 475670 887230 775960 825670 787000 628820 691120 TRUE FALSE FALSE 669607.3223 851109.2715 1126489.289 501654.6476 798894.2659 816588.0657 649258.8594 593987.016 755018.4061 518836.5031 1.290594085 1.640419027 2.171183567 0.966883873 1.539780376 1.573883219 1.251374673 1.144844305 1.455214507 1 18.98492046 -7.266035654 0.337971494 0.995771289 1.653308924 0.222245507 0.299326072 2.030808637 0.729288705 0.452407651 0.448300394 5.42E-08 7.266035654 0.657537635 GEGPGEAGGPLT(ph)PR ddPTM_HeLa_A486_30min_R1 2 GEGPGEAGGPLTPR 14 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 GEGPGEAGGPLT(1)PR;GEGPGEAGGPLT(1)PR ; 125.75 0.00013645 2228100000 816250 887110 850430 258741 1266930 719180 806890 849730 798640 890360 TRUE FALSE FALSE 759035.0901 816812.1728 1179739.271 602362.124 1108019.826 630454.8837 604997.5876 656265.0285 867866.7582 667408.0607 1.137287867 1.223857218 1.767643127 0.90253948 1.660183463 0.944631809 0.906488284 0.983304019 1.300354025 1 19.34820959 -6.300973047 24.99716085 1.018382865 1.331587624 0.277125198 0.251116729 712.5129531 450520.2554 0.085244606 0.075179766 5.00E-07 6.300973047 0.313204759 GEHGFIGCR ddPTM_HeLa_A485_30min_R1 4 GEHGFIGCR 9 0 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 166.52 3.18E-05 709390000 97115.6 138890.9 160850.1 115098.3 163950.6 144897.2 168482.8 187555.2 123595.1 136030 FALSE FALSE TRUE 118718.6302 155132.9826 220355.2455 121385.8287 147627.1026 152483.7933 132485.0734 141556.9931 148399.5029 102120.2244 1.162537889 1.51912105 2.157802205 1.188656109 1.445620624 1.493179183 1.297344127 1.386179808 1.453184261 1 16.63990909 -10.13870966 0.246753545 0.666980788 1.556297645 0.223177865 0.260379768 26.63664799 1.451795227 6.395060357 0.46623082 7.27E-11 10.13870966 0.889316857 GEHGFIGCR ddPTM_HeLa_A486_30min_R1 3 GEHGFIGCR 9 0 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ;; ;; 102.61 0.0052284 762580000 104654 133123 123566 38240 168459 105810 130756 132202 99265 119454 FALSE FALSE TRUE 97318.29503 122573.8487 171414.0644 89024.65254 147329.3014 92756.238 98039.4658 102102.4905 107869.3701 89541.94088 1.086845941 1.368898724 1.914343856 0.994222949 1.645366405 1.035897112 1.094899941 1.140275602 1.20467983 1 16.45027597 -6.283925799 24.87887881 1.103902041 1.405916641 0.276169233 0.24808933 1057.469911 1169976.438 0.085614345 0.075562175 5.20E-07 6.283925799 0.3020146 GEHSIVYLKPSYAFGSVGK ddPTM_HeLa_A485_30min_R1 1 GEHSIVYLKPSYAFGSVGK 19 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 192.69 2.00E-19 24361000 41838 41005 41186 46730 49953 48087 55765 47810 43853 62196 FALSE FALSE TRUE 51144.71876 45800.17805 56422.41529 49282.74157 44979.50392 50604.76096 43850.35219 36084.52254 52653.89486 46691.68183 1.095371097 0.980906582 1.208404004 1.055492962 0.96333013 1.083806772 0.939146984 0.772825504 1.127693259 1 15.51087793 -6.172254655 1.224169817 0.952034576 1.083954923 0.173672661 0.103965336 0.726298451 2.243180895 0.049724067 0.04850458 6.73E-07 6.172254655 0.131920348 GEHSIVYLKPSYAFGSVGK ddPTM_HeLa_A486_30min_R1 2 GEHSIVYLKPSYAFGSVGK 19 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ; ; 211.49 2.19E-24 47847000 91644 102662 75281 27935 107427 96896 106695 99434 87390 108740 FALSE FALSE TRUE 85220.22885 94526.68923 104431.8193 65034.09176 93952.50394 84941.95669 79998.7825 76795.04883 94965.03556 81510.79622 1.045508482 1.159683056 1.281202296 0.797858625 1.152638771 1.042094552 0.981450142 0.942145733 1.165060826 1 16.31470354 -5.233462217 24.99993187 1.015086398 1.161886422 0.277282715 0.111263058 982.1353805 877618.6996 0.029221698 0.050598619 5.84E-06 5.233462217 0.146800024 GEIEFEVVYVAPEVDS(ph)DDENVEYEDESGHR ddPTM_HeLa_A485_30min_R1 3 GEIEFEVVYVAPEVDSDDENVEYEDESGHR 30 0 A0A0J9YVX5;F5H1Y4;Q9HD26-2;Q9HD26 A0A0J9YVX5 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein 1 0 GEIEFEVVYVAPEVDS(1)DDENVEYEDESGHR;GEIEFEVVYVAPEVDS(0.993)DDENVEY(0.006)EDES(0.001)GHR;GEIEFEVVYVAPEVDS(1)DDENVEYEDESGHR ;; 166.56 2.12E-14 391531000 141909 181146 204065 157164 209807 159609 186351 162685 191760 222334 TRUE FALSE FALSE 173476.1675 202329.4489 279557.1354 165749.4714 188917.8784 167965.8804 146535.5865 122786.2487 230244.4731 166910.2256 1.039338165 1.212205233 1.674895198 0.993045638 1.131853233 1.006324687 0.877930552 0.735642458 1.379450973 1 17.34871282 GEIEFEVVYVAPEVDS(ph)DDENVEYEDESGHR ddPTM_HeLa_A486_30min_R1 2 GEIEFEVVYVAPEVDSDDENVEYEDESGHR 30 0 A0A0J9YVX5;F5H1Y4;Q9HD26-2;Q9HD26 A0A0J9YVX5 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein 1 0 GEIEFEVVYVAPEVDS(1)DDENVEYEDESGHR;GEIEFEVVYVAPEVDS(1)DDENVEYEDESGHR ; 157.74 2.44E-10 286510000 135969 152506 168990 78139 183140 153492 175126 160106 153384 150440 TRUE FALSE FALSE 126438.2752 140420.8691 234427.4537 181911.5409 160168.8735 134555.7176 131307.6225 123653.3589 166679.4486 112768.8448 1.121216374 1.245209786 2.078831739 1.613136512 1.420329115 1.193199397 1.164396272 1.096520578 1.478062925 1 16.78300902 -6.136422875 3.356865872 1.190045629 1.534164533 0.26163218 0.262060129 0.375723902 7.876717048 0.096858561 0.097306194 7.30E-07 6.136422875 0.344118904 GEILLEEEKS(ph)TDFVFIPPEGK ddPTM_HeLa_A485_30min_R1 1 GEILLEEEKSTDFVFIPPEGK 21 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 GEILLEEEKS(0.86)T(0.14)DFVFIPPEGK 92.275 0.00047216 25820000 30104 18679 15946 52400 37662 22140 43619 36960 26282 107840 TRUE FALSE FALSE 36800.53094 20863.34656 21845.08897 55262.47932 33912.23904 23299.21617 34299.44432 27895.50205 31556.55633 80957.47265 0.454566203 0.257707484 0.269834127 0.682611222 0.418889547 0.287795745 0.42367237 0.344569823 0.389791767 1 16.30487663 -10.63701636 2.338792305 1.086270685 0.390393939 0.709412586 0.116702804 2008053.175 1527048.636 1043507.814 0.031577632 2.31E-11 10.63701636 -0.695876746 GEILLEEEKS(ph)TDFVFIPPEGK ddPTM_HeLa_A486_30min_R1 1 GEILLEEEKSTDFVFIPPEGK 21 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 GEILLEEEKS(0.782)T(0.218)DFVFIPPEGK 100.27 0.00020085 51210000 84797 92234 46120 87688 90831 131660 185380 150140 86814 202140 TRUE FALSE FALSE 78853.16819 84925.04193 63978.89914 204142.0955 79438.12901 115417.1278 138995.9633 115956.3995 94339.10742 151522.8283 0.520404543 0.560476879 0.422239341 1.347269569 0.524265089 0.76171445 0.91732688 0.765273463 0.622606564 1 17.20917564 GEIPS(ph)PQLTRPK ddPTM_HeLa_A485_30min_R1 4 GEIPSPQLTRPK 12 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK ;;; 118.47 8.75E-05 1919880000 2625390 2759400 2401010 3314030 3004280 2821050 3177110 2726030 2454810 4207980 TRUE FALSE FALSE 3209398.948 3082087.826 3289243.513 3495067.067 2705163.335 2968755.816 2498294.494 2057466.868 2947467.85 3159008.028 1.015951501 0.97565052 1.041226703 1.106381192 0.856333162 0.939774698 0.790847782 0.651301564 0.933035885 1 21.59104017 -5.809459034 9.548089843 0.844473619 1.030931897 0.435707136 0.09514107 0.332597265 63.09236451 0.030261183 0.034421411 1.55E-06 5.809459034 0.186458278 GEIPS(ph)PQLTRPK ddPTM_HeLa_A486_30min_R1 4 GEIPSPQLTRPK 12 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK;GEIPS(1)PQLTRPK ;;; 153.23 4.31E-08 2131880000 3446470 3889250 2477390 1136789 3425970 3601250 3699430 3461930 3273240 4332800 TRUE FALSE FALSE 3204890.251 3581051.666 3436701.755 2646502.242 2996252.897 3156964.39 2773793.485 2673724.112 3556967.079 3247838.678 0.986776305 1.102595301 1.058150387 0.814850276 0.922537476 0.972020073 0.854042876 0.82323181 1.095179728 1 21.63104854 -5.228525856 24.02422299 0.917392455 1.054516212 0.303525276 0.084705826 443.8243391 323954.8588 0.022328214 0.038669326 5.91E-06 5.228525856 0.137123757 GEK(ac)GEVVETVEDVIVR ddPTM_HeLa_A486_30min_R1 1 GEKGEVVETVEDVIVR 16 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 GEK(1)GEVVETVEDVIVR 93.823 0.0015398 0 3274.3 4038.8 3955.7 1337.6 5326.6 4576.7 5268.9 4553.9 4034.7 4608.7 FALSE TRUE FALSE 3044.788479 3718.750779 5487.452977 3114.000399 4658.488159 4012.073286 3950.565491 3517.076381 4384.431045 3454.651522 0.881359077 1.076447438 1.58842446 0.901393492 1.348468327 1.161353978 1.143549636 1.018069799 1.26913844 1 11.75432448 -7.009204354 20.01151603 1.102324529 1.170499256 0.017285476 0.204127375 168.5764031 366497.8091 0.088464523 0.055820613 9.79E-08 7.009204354 0.068174727 GEKS(ph)S(ph)MLFY(ph)IDEER ddPTM_HeLa_A485_30min_R1 1 GEKSSMLFYIDEER 14 1 I6L8A6 I6L8A6 RBBP8 3 0 GEKS(1)S(1)MLFY(1)IDEER 44.005 0.026676 934770000 315190 495320 297170 109500 224940 246910 187750 311020 359890 212510 TRUE FALSE FALSE 385302.9281 553243.3653 407105.5493 115481.7077 202544.1838 259837.8258 147635.6787 234741.8573 432116.6219 159535.168 2.415159824 3.46784582 2.551823241 0.723863642 1.269589561 1.628718164 0.925411498 1.471411353 2.708597906 1 17.28351496 -5.09010909 5.541211999 1.400083083 2.959457172 0.575743021 0.565209016 0.148775051 7.106518731 0.153445373 0.273678523 8.13E-06 5.09010909 1.559374089 GELS(ph)PSFLNPPLPPSIDDR ddPTM_HeLa_A485_30min_R1 1 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.971)PS(0.029)FLNPPLPPSIDDR 83.253 0.0015811 73609000 24405 35818 40967 24077 35995 28990 27166 23793 29789 24787 TRUE FALSE FALSE 29833.80805 40006.60352 56122.39808 25392.26554 32411.21141 30507.87157 21361.76217 17957.72944 35767.37906 18608.05707 1.603273675 2.149961351 3.01602676 1.364584462 1.741783749 1.639497958 1.147984558 0.965051288 1.922144742 1 14.18363981 -5.307400946 24.98273622 1.40989382 2.245775153 0.452048175 0.433254374 378.4415407 205703.7858 0.123601419 0.18333118 4.93E-06 5.307400946 0.835881333 GELS(ph)PSFLNPPLPPSIDDR ddPTM_HeLa_A486_30min_R1 1 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.886)PS(0.114)FLNPPLPPSIDDR 62.14 0.016739 105670000 31858 47819 61504 9743.3 57883 35480 28692 28904 42481 25598 TRUE FALSE FALSE 29624.91871 44029.64829 85319.99593 22682.8948 50622.7744 31102.83833 21512.95813 22323.19017 46163.28728 19188.09418 1.543921894 2.294633738 4.446507043 1.182133805 2.638238791 1.620944635 1.121161795 1.163387565 2.405829721 1 14.22792381 -6.152171004 1.510748232 1.421718039 2.554599005 0.215792367 0.890108648 0.613990068 2.815528309 0.383620581 0.378785993 7.04E-07 6.152171004 1.132880965 GELS(ph)PSFLNPPLPPSIDDRDLSTEEVR ddPTM_HeLa_A485_30min_R1 2 GELSPSFLNPPLPPSIDDRDLSTEEVR 27 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.811)PS(0.189)FLNPPLPPSIDDRDLSTEEVR;GELS(0.794)PS(0.206)FLNPPLPPSIDDRDLSTEEVR ; 173.04 1.91E-14 183775000 67124 85332 110979 82882 129545 89227 113951 123054 87214 123172 TRUE FALSE FALSE 82055.50222 95310.83511 152034.7503 87409.63379 116647.0449 93898.78775 89604.43796 92874.81356 104717.0498 92467.48721 0.887398422 1.030749704 1.64419684 0.945301278 1.261492536 1.01547896 0.969037233 1.004405076 1.132474267 1 16.49665856 -6.291528653 22.80798279 1.021101726 1.162648011 0.094477147 0.199481544 588.3694966 445986.8874 0.071073622 0.062694769 5.11E-07 6.291528653 0.141546285 GELS(ph)PSFLNPPLPPSIDDRDLSTEEVR ddPTM_HeLa_A486_30min_R1 2 GELSPSFLNPPLPPSIDDRDLSTEEVR 27 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.967)PS(0.033)FLNPPLPPSIDDRDLSTEEVR;GELS(0.616)PS(0.384)FLNPPLPPSIDDRDLSTEEVR ; 120.98 3.31E-05 236471000 43716 52776 56558 22882 92657 59786 64857 75910 55385 52211 TRUE FALSE FALSE 40651.73415 48593.83755 78458.77228 53270.45239 81035.09507 52410.21118 48629.09261 58626.9501 60185.81639 39137.02576 1.038702695 1.241633379 2.004719846 1.361126743 2.070548119 1.339146503 1.24253419 1.497991964 1.537822949 1 15.2562465 GELSPS(ph)FLNPPLPPSIDDR ddPTM_HeLa_A485_30min_R1 1 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.352)PS(0.648)FLNPPLPPSIDDR 158.45 2.28E-09 18718000 16939 13997 17432 15927 16975 13634 15915 14779 11220 25495 TRUE FALSE FALSE 20707.02211 15633.82739 23880.82221 16797.05168 15284.9094 14347.85516 12514.63024 11154.42708 13471.75108 19139.5657 1.081896133 0.816832923 1.247720172 0.877608821 0.798602729 0.749643716 0.653861766 0.582794158 0.703869215 1 14.22427047 -5.710126772 2.344058983 0.712853002 1.028460502 0.453133462 0.144201325 0.247457469 2.783227007 0.045841963 0.060464406 1.95E-06 5.710126772 0.3156075 GEPAAAAAPEAGAS(ph)PVEK ddPTM_HeLa_A485_30min_R1 6 GEPAAAAAPEAGASPVEK 18 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK ;;;;; 272.63 5.52E-69 9190130000 4539610 4248260 3063490 5082410 3368870 3613250 4559600 3623150 3065940 6559070 TRUE FALSE FALSE 5549430.583 4745057.052 4196802.433 5360049.189 3033453.474 3802434.183 3585404.211 2734566.782 3681246.036 4924014.56 1.127013439 0.963656178 0.852313165 1.088552669 0.616052905 0.772222368 0.72814655 0.555353106 0.747610713 1 22.2314036 -5.760851639 24.99999624 0.715693939 0.993612563 0.506930454 0.129811057 12.47005662 530406.0242 0.037835367 0.045942051 1.73E-06 5.760851639 0.277918624 GEPAAAAAPEAGAS(ph)PVEK ddPTM_HeLa_A486_30min_R1 5 GEPAAAAAPEAGASPVEK 18 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK ;;;; 320.8 1.46E-89 8220990000 5049320 5101600 2829020 1624500 3646860 4890760 5308160 4601330 4048130 6556410 TRUE FALSE FALSE 4695388.743 4697330.636 3924492.308 3781918.098 3189436.813 4287387.757 3980002.224 3553707.605 4399025.168 4914642.261 0.955387695 0.955782819 0.798530615 0.769520526 0.64896622 0.872370262 0.809825418 0.723085713 0.895085529 1 22.22865498 -4.76134455 24.06056202 0.799140022 0.955585321 0.261566597 0.091783065 1.666201066 421645.028 0.022730531 0.052875672 1.73E-05 4.76134455 0.156445299 GEPGRPALYFCGSIR ddPTM_HeLa_A485_30min_R1 1 GEPGRPALYFCGSIR 15 1 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 0 0 107.34 0.00071787 21980000 9738.4 15260 25805 8011.4 16431 15534 13117 14208 18158 12202 FALSE FALSE TRUE 11904.67348 17044.52426 35351.34334 8449.042496 14795.07195 16347.33622 10314.44579 10723.46572 21802.14404 9160.265961 1.299599109 1.860701898 3.859204906 0.922357771 1.615135631 1.784591876 1.125998507 1.170650041 2.380077624 1 13.16117377 GEPGRPALYFCGSIR ddPTM_HeLa_A486_30min_R1 1 GEPGRPALYFCGSIR 15 1 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 0 0 72.433 0.019919 13595000 8763.2 14536 15718 5150.7 20053 15084 16444 15943 13227 14340 FALSE FALSE TRUE 8148.944933 13384.11442 21804.43054 11991.0899 17537.76575 13223.08944 12329.53727 12313.12693 14373.52701 10749.17066 0.758099875 1.245129959 2.028475612 1.115536284 1.63154594 1.230149735 1.14702219 1.145495529 1.33717544 1 13.39193773 -6.505331576 23.43265953 1.172267552 1.379360037 0.07715816 0.318866497 900.4849972 1202521.001 0.115539759 0.099563886 3.12E-07 6.505331576 0.207092485 GEPNVS(ph)YICSR ddPTM_HeLa_A485_30min_R1 4 GEPNVSYICSR 11 0 A0A3B3ITW1;P49841;P49841-2;A8MT37;P49840 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 0 GEPNVS(0.965)Y(0.035)ICSR;GEPNVS(0.687)Y(0.313)ICSR;GEPNVS(0.629)Y(0.371)ICSR;GEPNVS(0.626)Y(0.374)ICSR ;;; 217.96 8.87E-18 11496210000 2393070 2423030 2124380 3092850 3251030 2492350 3401450 3294150 2290870 4115040 TRUE FALSE FALSE 2925400.166 2706382.281 2910276.565 3261804.564 2927346.038 2622845.592 2674702.42 2486254.547 2750626.596 3089236.26 0.946965502 0.876068404 0.942069923 1.055861155 0.94759539 0.849027194 0.865813488 0.804812044 0.890390493 1 21.55881878 -6.228397 8.800207576 0.868808358 0.954537971 0.235675513 0.062334239 0.482131848 122.3139703 0.020984441 0.020814133 5.91E-07 6.228397 0.085729613 GEPNVS(ph)YICSR ddPTM_HeLa_A486_30min_R1 6 GEPNVSYICSR 11 0 A0A3B3ITW1;P49841;P49841-2;A8MT37;P49840 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 0 GEPNVS(0.522)Y(0.478)ICSR;GEPNVS(0.833)Y(0.164)ICS(0.002)R;GEPNVS(0.612)Y(0.388)ICSR;GEPNVS(0.961)Y(0.039)ICSR;GEPNVS(0.983)Y(0.017)ICSR;GEPNVS(0.637)Y(0.352)ICS(0.011)R ;;;;; 204.94 8.34E-15 19566200000 2814840 3146410 2601850 1054040 3339650 2889000 3296580 3345010 2295980 3290760 TRUE FALSE FALSE 2617534.252 2897077.013 3609356 2453858.388 2920759.956 2532584.553 2471740.816 2583424.244 2494997.395 2466732.277 1.06113431 1.174459442 1.463213513 0.994780995 1.18406038 1.026696159 1.002030435 1.047306296 1.011458527 1 21.23416971 -5.941189945 1.372539903 1.017814956 1.209199578 0.320886837 0.11436131 0.503468405 1.969077293 0.047462881 0.056298896 1.15E-06 5.941189945 0.191384622 GEPNVSY(ph)ICSR ddPTM_HeLa_A485_30min_R1 5 GEPNVSYICSR 11 0 A0A3B3ITW1;P49841;P49841-2;A8MT37;P49840 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 0 GEPNVS(0.487)Y(0.513)ICSR;GEPNVS(0.14)Y(0.86)ICSR;GEPNVS(0.318)Y(0.682)ICSR;GEPNVS(0.412)Y(0.588)ICSR;GEPNVS(0.201)Y(0.799)ICSR ;;;; 175.66 1.01E-08 18825600000 731153 932780 1006620 894455 1150030 849890 1159360 1151080 856960 1171160 TRUE FALSE FALSE 893795.4624 1041860.507 1379010.627 943316.8118 1035528.975 894388.9262 911653.2649 868775.8252 1028944.011 879211.3656 1.016587703 1.184994357 1.568463149 1.07291244 1.177792981 1.017262698 1.036898863 0.988130794 1.170303356 1 19.74585051 -5.821905902 2.013198696 1.046141196 1.245354133 0.238597649 0.144244266 0.457506193 3.81232481 0.051283268 0.063745167 1.51E-06 5.821905902 0.199212937 GEPNVSY(ph)ICSR ddPTM_HeLa_A486_30min_R1 1 GEPNVSYICSR 11 0 A0A3B3ITW1;P49841;P49841-2;A8MT37;P49840 A0A3B3ITW1;P49840 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 0 GEPNVS(0.308)Y(0.692)ICSR 199.03 1.10E-14 8659000000 2016200 2299500 2498200 735670 2916800 1973200 2358900 2617200 2012600 2296500 TRUE FALSE FALSE 1874874.792 2117279.245 3465569.944 1712676.939 2550947.746 1729766.646 1768678.27 2021320.693 2187053.788 1721441.452 1.089130734 1.229945545 2.013179094 0.994908619 1.48186727 1.004836176 1.02744027 1.174202405 1.270478171 1 20.71518568 -6.263304848 24.99384567 1.102032107 1.370284837 0.196234457 0.269150129 295.270387 3956056.5 0.09285082 0.086066758 5.45E-07 6.263304848 0.26825273 GEPVTHYLVKWCSLPYEDSTWERRQDIDQAK ddPTM_HeLa_A486_30min_R1 1 GEPVTHYLVKWCSLPYEDSTWERRQDIDQAK 31 3 Q9P2D1;Q9P2D1-2 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 0 0 43.612 0.036991 409760000 98844 174700 202970 9936 240450 93403 63630 92788 140630 23349 FALSE FALSE TRUE 91915.54603 160856.1358 281565.4197 23131.51014 210290.5189 81879.88751 47709.10099 71662.19795 152819.9216 17502.25842 5.251639177 9.190593114 16.08737644 1.321630019 12.0150505 4.678246974 2.72588256 4.094454339 8.731440134 1 14.09525347 -6.38851638 8.188512533 4.301957524 8.782888612 0.237128456 4.064239615 0.45752818 28.32379217 1.40655187 1.238515682 4.09E-07 6.38851638 4.480931088 GEQVSQNGLPAEQGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 GEQVSQNGLPAEQGSPR 17 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR ;;; 457.33 3.00E-216 14145000000 2356390 2708700 2628900 2540010 2453120 2272960 2734630 2258870 2289680 3137610 TRUE FALSE FALSE 2880560.826 3025458.902 3601439.508 2678764.315 2208878.759 2391968.671 2150353.961 1704878.591 2749197.774 2355461.57 1.22292839 1.284444179 1.528974004 1.137256641 0.937768965 1.015498916 0.91292254 0.723798092 1.167158831 1 21.16757836 -5.544617036 4.011482736 0.948343667 1.341143643 0.648542996 0.126949568 0.127036868 4.61131111 0.03781692 0.052146091 2.85E-06 5.544617036 0.392799976 GEQVSQNGLPAEQGS(ph)PR ddPTM_HeLa_A486_30min_R1 6 GEQVSQNGLPAEQGSPR 17 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR ;;;;; 374.51 7.87E-120 19642510000 6028860 7422820 6080960 1905287 6207450 6231160 6520310 6113280 5545020 6695950 TRUE FALSE FALSE 5606268.047 6834608.71 8435670.566 4435604.424 5428853.739 5462422.833 4888859.473 4721419.596 6025666.798 5019240.537 1.116955445 1.361681844 1.680666727 0.883720234 1.081608602 1.088296684 0.974023747 0.940664143 1.200513654 1 22.25903766 -5.277588498 24.97241536 1.024628096 1.38395942 0.547165273 0.151040144 582.8343043 901272.582 0.04260034 0.063405382 5.28E-06 5.277588498 0.359331323 GES(ph)ENAGTNQETR ddPTM_HeLa_A485_30min_R1 3 GESENAGTNQETR 13 0 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR ;; 300.3 7.87E-58 4798190000 833800 999220 922920 873340 1013600 909570 1083020 978810 851360 1128500 TRUE FALSE FALSE 1019275.933 1116070.087 1264346.514 921048.3528 912682.425 957193.6787 851623.9295 738755.3128 1022220.143 847185.7185 1.203131629 1.317385389 1.492407729 1.087185882 1.077310919 1.129851056 1.00523877 0.872011056 1.206606911 1 19.69231874 -5.393553917 6.32392237 1.047444274 1.334385079 0.605638164 0.105170062 0.159923035 7.526868522 0.030102412 0.044832439 4.04E-06 5.393553917 0.286940805 GES(ph)ENAGTNQETR ddPTM_HeLa_A486_30min_R1 5 GESENAGTNQETR 13 0 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(0.999)ENAGT(0.001)NQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR ;;;; 301.54 6.60E-58 7571773000 1060051 1265140 864949 366089 1081017 1064330 1079015 1067307 972120 1210347 TRUE FALSE FALSE 985746.899 1164885.699 1199880.417 852273.6931 945425.7678 933023.7859 809034.0343 824304.4952 1056384.144 907268.2332 1.08649996 1.283948513 1.322520037 0.939384475 1.042057611 1.028388024 0.891725297 0.908556549 1.164357029 1 19.79116962 -5.26632356 24.99953147 0.991422264 1.236285408 0.574134673 0.092503212 276.215024 1413800.699 0.025976656 0.039987972 5.42E-06 5.26632356 0.244863144 GESAADS(ph)DGWDSAPSDLR ddPTM_HeLa_A485_30min_R1 2 GESAADSDGWDSAPSDLR 18 0 I3L0Y2;I3L4Q4;Q9BUL5-4;Q9BUL5;A0A087WVQ2;Q9BUL5-2 I3L0Y2 PHF23 PHD finger protein 23 1 0 GESAADS(1)DGWDSAPSDLR;GESAADS(1)DGWDSAPSDLR ; 363.97 2.22E-129 386120000 105331 131438 123573 103375 108050 103281 139020 113819 101429 145000 TRUE FALSE FALSE 128761.5176 146808.5307 169287.795 109022.1145 97292.16261 108688.6335 109317.2413 85904.71179 121784.8699 108854.1685 1.182880907 1.348671647 1.555179717 1.001542853 0.893784445 0.998479295 1.004254066 0.789172458 1.118789217 1 16.73203713 -5.360675148 6.726930511 0.959928855 1.359496119 0.704121544 0.115824267 0.126417179 7.317511449 0.032153996 0.047899716 4.36E-06 5.360675148 0.399567264 GESAADS(ph)DGWDSAPSDLR ddPTM_HeLa_A486_30min_R1 1 GESAADSDGWDSAPSDLR 18 0 I3L0Y2;I3L4Q4;Q9BUL5-4;Q9BUL5;A0A087WVQ2;Q9BUL5-2 I3L0Y2 PHF23 PHD finger protein 23 1 0 GESAADS(1)DGWDSAPSDLR 210.9 1.07E-25 220040000 102850 144440 150320 29992 124060 124190 111360 112430 139250 135200 TRUE FALSE FALSE 95640.74612 132994.0484 208527.9297 69822.89171 108499.238 108868.7005 83496.55015 86832.14333 151320.3021 101345.04 0.943714129 1.312289663 2.057603704 0.688962101 1.070592483 1.074238073 0.823883933 0.856797169 1.493119961 1 16.62891596 -5.295962208 24.99872629 0.993678906 1.425312124 0.276361087 0.323544433 790.2250476 572217.4189 0.091172669 0.135238132 5.06E-06 5.295962208 0.431633218 GESAEDKEHEEGRDS(ph)EEGPR ddPTM_HeLa_A485_30min_R1 3 GESAEDKEHEEGRDSEEGPR 20 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7EPS6;A0A087WX58 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR ;; 225.27 7.00E-36 10923410000 3027490 2564240 2269370 4184700 2829900 2651870 3458900 2742140 2449390 4762890 TRUE FALSE FALSE 3700944.706 2864105.562 3108904.399 4413299.565 2548145.22 2790717.813 2719877.758 2069625.865 2940960.106 3575589.177 1.035058706 0.801016398 0.869480314 1.234285972 0.712650445 0.780491738 0.760679604 0.578820933 0.82251063 1 21.76974955 GESAEDKEHEEGRDS(ph)EEGPR ddPTM_HeLa_A486_30min_R1 4 GESAEDKEHEEGRDSEEGPR 20 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7EPS6;A0A087WX58 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR;GESAEDKEHEEGRDS(1)EEGPR ;;; 237.97 1.94E-46 13743760000 6669320 6671710 3899800 2735090 5058520 6972160 7632130 6448010 5639370 9503410 TRUE FALSE FALSE 6201835.108 6143019.402 5409907 6367427.744 4424033.253 6112005.787 5722490.35 4979938.882 6128195.132 7123694.279 0.870592542 0.862336193 0.759424364 0.893837873 0.621030757 0.857982607 0.803303753 0.699066901 0.860255212 1 22.76419417 -10.09647881 5.409757467 1.000002597 0.799425678 0.33646752 0.082811256 2.49E-06 4.16E-07 0.076992849 0.018673267 8.01E-11 10.09647881 -0.200576919 GESRPET(ph)PK ddPTM_HeLa_A485_30min_R1 6 GESRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GESRPET(1)PK;GESRPET(1)PK;GESRPET(1)PK;GES(0.001)RPET(0.999)PK;GESRPET(1)PK;GESRPET(1)PK ;;;;; 100.19 0.0020228 8986340000 3073680 3271350 3158780 4635230 4357090 2910270 4384100 4099580 3128050 6130650 TRUE FALSE FALSE 3757409.512 3653905.926 4327344.17 4888440.878 3923282.821 3062647.237 3447401.22 3094151.577 3755820.943 4602391.781 0.816403664 0.793914577 0.940238114 1.06215227 0.852444339 0.665446877 0.74904558 0.672292087 0.816058502 1 22.13395237 -6.010127844 24.69031919 0.758208766 0.905429693 0.200796421 0.111361954 566.7249064 1381602.581 0.035803772 0.038251538 9.77E-07 6.010127844 0.147220927 GESRPET(ph)PK ddPTM_HeLa_A486_30min_R1 5 GESRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GESRPET(1)PK;GESRPET(1)PK;GESRPET(1)PK;GESRPET(1)PK;GES(0.001)RPET(0.999)PK ;;;; 86.911 0.0039245 4855890000 2195350 2583970 1822960 1329346 2514110 2430020 3163640 2856440 2071750 3369600 TRUE FALSE FALSE 2041467.302 2379206.807 2528858.933 3094784.669 2198766.881 2130228.839 2372063.81 2206090.968 2251330.958 2525830.228 0.808236151 0.941950405 1.001199093 1.225254427 0.870512537 0.843377681 0.939122426 0.873412213 0.891323151 1 21.26832624 GEVDSNGS(ph)DGGEASR ddPTM_HeLa_A486_30min_R1 2 GEVDSNGSDGGEASR 15 0 Q7LBC6 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 GEVDS(0.413)NGS(0.587)DGGEASR;GEVDS(0.052)NGS(0.948)DGGEASR ; 218.85 1.65E-33 159569000 236530 357310 287980 83677 270310 287830 271650 263900 308490 286400 TRUE FALSE FALSE 219950.4684 328995.4543 399493.5684 194804.2848 236405.1993 252320.461 203680.2968 203815.7309 335230.1616 214683.5758 1.024533281 1.532466808 1.860848306 0.907401901 1.101179717 1.175313296 0.948746526 0.949377381 1.561508188 1 17.7118523 -5.281302549 24.99923054 1.087716582 1.478601274 0.313413776 0.258105232 925.8851525 1165291.076 0.072555919 0.107774527 5.23E-06 5.281302549 0.390884692 GEVLGLSSS(ph)LGK ddPTM_HeLa_A485_30min_R1 2 GEVLGLSSSLGK 12 0 F1LLU8;Q9NQG7-2;Q9NQG7-3;Q9NQG7;Q9NQG7-4 F1LLU8 HPS4 Hermansky-Pudlak syndrome 4 protein 1 0 GEVLGLS(0.001)S(0.032)S(0.967)LGK;GEVLGLSS(0.001)S(0.999)LGK ; 252.08 2.75E-29 349810000 1216520 1364800 992340 1512930 1504300 1311210 1684800 1723160 1078290 1778210 TRUE FALSE FALSE 1487130.677 1524401.488 1359447.861 1595577.535 1354526.61 1379862.928 1324828.716 1300552.308 1294692.912 1334934.973 1.114009826 1.141929397 1.018362608 1.195247385 1.014676099 1.033655539 0.992429402 0.974243941 0.969854666 1 20.34833804 -5.914863193 8.290277762 0.995819355 1.111924454 0.643753762 0.043831781 0.168721108 14.52989406 0.013335286 0.01513886 1.22E-06 5.914863193 0.116105099 GEVLGLSSS(ph)LGK ddPTM_HeLa_A486_30min_R1 2 GEVLGLSSSLGK 12 0 F1LLU8;Q9NQG7-2;Q9NQG7-3;Q9NQG7;Q9NQG7-4 F1LLU8 HPS4 Hermansky-Pudlak syndrome 4 protein 1 0 GEVLGLSSS(1)LGK;GEVLGLS(0.001)S(0.048)S(0.951)LGK ; 221.86 5.06E-23 446620000 1748920 1752650 1060520 682910 1628750 1668940 1982870 1849440 1204630 2043740 TRUE FALSE FALSE 1626329.739 1613763.631 1471181.746 1589848.992 1424456.988 1463043.151 1486734.953 1428362.885 1309048.298 1531974.201 1.061590814 1.053388255 0.960317572 1.037777915 0.929817869 0.955005084 0.970469967 0.932367453 0.854484558 1 20.54696057 -4.727173034 0.537152919 0.930514582 1.117550679 0.492555447 0.043462108 2.193068264 0.686507532 0.026702875 0.242299042 1.87E-05 4.727173034 0.187036097 GEVPGGSAHYGGPS(ph)PEKK ddPTM_HeLa_A485_30min_R1 1 GEVPGGSAHYGGPSPEKK 18 1 O94762-4;O94762;J3KS37 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 0 GEVPGGSAHYGGPS(1)PEKK 164.94 3.70E-12 601100000 629780 608300 405160 825240 850340 690690 1253800 1214400 538430 1407500 TRUE FALSE FALSE 769872.3883 679435.3935 555045.5441 870320.7716 765677.1639 726853.4604 985915.3874 916566.4959 646487.9622 1056636.153 0.728606897 0.643017364 0.525294864 0.823671203 0.724636538 0.687893802 0.933069898 0.867438137 0.611835929 1 20.01104725 -6.043063704 0.837015847 0.83921471 0.643783147 0.28394973 0.119972844 0.855301492 1.32221096 0.071562971 0.08546677 9.06E-07 6.043063704 -0.195431563 GEVPGGSAHYGGPS(ph)PEKK ddPTM_HeLa_A486_30min_R1 2 GEVPGGSAHYGGPSPEKK 18 1 O94762-4;O94762;J3KS37 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 0 GEVPGGSAHYGGPS(1)PEKK;GEVPGGSAHYGGPS(1)PEKK ; 173.43 1.37E-12 1289820000 1722690 1477380 667390 223240 1274570 1603020 2381600 2057300 1092700 1984920 TRUE FALSE FALSE 1601938.327 1360307.028 925821.2813 519714.0019 1114701.546 1405255.691 1785698.49 1588897.701 1187416.116 1487883.112 1.076656031 0.914256649 0.622240601 0.349297601 0.749186234 0.944466456 1.200160466 1.067891481 0.798057392 1 20.50482976 -6.327809559 4.009164468 1.026104759 0.722481996 0.298242161 0.199564166 0.303315712 9.681987753 0.080016511 0.071048931 4.70E-07 6.327809559 -0.303622763 GEVPPKET(ph)PK ddPTM_HeLa_A485_30min_R1 6 GEVPPKETPK 10 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK ;;;;; 102.87 0.0014881 4960410000 5037080 3608870 2404590 9748530 4715600 4972050 9137660 7472160 3488280 14321100 TRUE FALSE FALSE 6157561.068 4030895.954 3294147.904 10281067.51 4246098.307 5232378.85 7185324.293 5639601.044 4188345.8 10751113.33 0.572737063 0.374928236 0.306400631 0.956279335 0.394944986 0.486682513 0.668333044 0.524559724 0.389573216 1 23.35798273 -11.12547277 2.401102888 1.957420713 0.521630726 0.397062778 0.177656097 8818441.672 2542926.78 45990000.66 0.04595233 7.49E-12 11.12547277 -1.435789987 GEVPPKET(ph)PK ddPTM_HeLa_A486_30min_R1 7 GEVPPKETPK 10 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK;GEVPPKET(1)PK ;;;;;; 117.93 0.00028223 7731050000 5917030 5262160 2242040 5093670 4521430 7214160 10080120 8619950 4480250 14901620 TRUE FALSE FALSE 5502276.753 4845167.277 3110217.932 11858321.18 3954310.089 6324150.287 7557967.359 6657375.557 4868601.677 11170157.36 0.492587219 0.433759984 0.278439939 1.061607352 0.354006659 0.566164834 0.676621386 0.595996578 0.435857931 1 23.41314617 -14 0.297068617 4.638776113 0.525009635 0.301868083 0.20620157 337.5865153 3.147855049 764.5245514 0.209897137 1.00E-14 14 -4.113766478 GEWFLLGS(ph)PGS ddPTM_HeLa_A485_30min_R1 2 GEWFLLGSPGS 11 0 Q96T76-5;Q96T76-9;Q96T76;Q96T76-8;H0Y7V3;H0Y746 Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog 1 0 GEWFLLGS(0.998)PGS(0.002);GEWFLLGS(0.999)PGS(0.001) ; 108.7 0.00061291 13209100 47291 71233 75194 54729 80904 62851 73785 78397 64705 69227 TRUE FALSE FALSE 57810.7198 79563.07971 103011.3897 57718.70669 72848.91369 66141.78117 58020.23198 59170.01283 77690.69999 51969.98293 1.112386738 1.530942964 1.982132452 1.110616233 1.40174981 1.272691993 1.116418146 1.138542087 1.494914865 1 15.66539096 GEWFLLGS(ph)PGS ddPTM_HeLa_A486_30min_R1 3 GEWFLLGSPGS 11 0 Q96T76-5;Q96T76-9;Q96T76;Q96T76-8;H0Y7V3;H0Y746 Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog 1 0 GEWFLLGS(0.979)PGS(0.021);GEWFLLGS(0.999)PGS(0.001);GEWFLLGS(0.999)PGS(0.001) ;; 114.83 0.00037902 16520300 112830 122684 108741 44786 138898 103524 125857 124022 99277 119174 TRUE FALSE FALSE 104921.1997 112962.073 150848.4274 104264.0714 121476.1177 90752.26143 94366.24742 95784.89798 107882.4103 89332.05471 1.174507852 1.264518917 1.688625968 1.167151833 1.35982675 1.015898064 1.05635371 1.072234354 1.207656206 1 16.44689032 -6.256539255 24.56674676 1.074063438 1.338010606 0.444324112 0.145522026 319.6622059 1602624.99 0.049435722 0.047935742 5.54E-07 6.256539255 0.263947168 GEWKPR ddPTM_HeLa_A485_30min_R1 3 GEWKPR 6 1 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 0 ;; ;; 101.52 0.014851 1013040000 957072 1229885 921808 980371 1223855 1153864 1276422 1265836 1113322 1410476 FALSE FALSE TRUE 1169969.365 1373709.352 1262823.139 1033926.185 1102003.699 1214278.535 1003704.012 955387.7362 1336755.513 1058870.291 1.104922269 1.297334871 1.192613627 0.976442718 1.040735308 1.146767971 0.947900815 0.902270792 1.262435564 1 20.01409444 -5.19453396 6.897849532 1.036280421 1.209941743 0.317612232 0.106261859 0.286649503 25.06634979 0.028255527 0.049214662 6.39E-06 5.19453396 0.173661322 GEWKPR ddPTM_HeLa_A486_30min_R1 2 GEWKPR 6 1 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 0 ; ; 103.71 0.013812 794540000 1014230 1104920 771130 382350 1300650 1080920 1191970 1083750 887320 1218210 FALSE FALSE TRUE 943137.7145 1017362.115 1069732.188 890130.1229 1137510.349 947567.0804 893726.4986 837003.7831 964233.612 913162.2868 1.032825959 1.114108773 1.171459009 0.974777579 1.245682575 1.037676538 0.978715954 0.916599158 1.055927983 1 19.80051175 -6.516545244 19.50607204 0.984765184 1.108013278 0.363394011 0.07509972 16.96519425 52256.56787 0.02674125 0.021619198 3.04E-07 6.516545244 0.123248094 GFADIPTGKT(ph)SPYILR ddPTM_HeLa_A485_30min_R1 1 GFADIPTGKTSPYILR 16 1 P49454 P49454 CENPF Centromere protein F 1 0 GFADIPT(0.002)GKT(0.651)S(0.347)PYILR 134.04 1.25E-05 887380000 460500 601650 543630 577260 836750 796660 1086700 1402100 527380 752540 TRUE FALSE FALSE 562936.6363 672007.7338 744741.3593 608794.2521 753440.232 838371.8857 854517.6675 1058232.777 633220.3286 564945.6275 0.996443921 1.189508691 1.318253161 1.077615654 1.333650878 1.483986856 1.512566212 1.873158628 1.120851809 1 19.1077525 -5.975811001 4.028936065 1.457201935 1.161729718 0.182001058 0.236545526 0.30347787 11.11621762 0.074793237 0.082486576 1.06E-06 5.975811001 -0.295472218 GFADIPTGKT(ph)SPYILR ddPTM_HeLa_A486_30min_R1 2 GFADIPTGKTSPYILR 16 1 P49454 P49454 CENPF Centromere protein F 1 0 GFADIPTGKT(0.815)S(0.185)PYILR;GFADIPTGKT(0.665)S(0.335)PYILR ; 177.02 7.55E-13 1116400000 1256020 970870 912290 645300 1781290 1132890 1625370 1779340 832670 1660790 TRUE FALSE FALSE 1167979.484 893934.7254 1265553.12 1502291.012 1557863.998 993125.5502 1218685.235 1374223.125 904846.506 1244917.374 0.938198396 0.718067515 1.016575996 1.206739534 1.251379434 0.797744148 0.97892861 1.103866934 0.726832579 1 20.24761856 -4.786990873 23.21252368 1.020888036 0.828133156 0.168594497 0.160392855 147.2517806 133772.4584 0.043088327 0.089773926 1.63E-05 4.786990873 -0.19275488 GFAFISFHR ddPTM_HeLa_A485_30min_R1 2 GFAFISFHR 9 0 K7ENA8;O75821;K7EP16 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 0 ; ; 160.88 2.70E-06 326520000 383020 602550 721590 185219 679220 482470 608680 636330 468650 455730 FALSE FALSE TRUE 468221.4776 673012.981 988536.1689 195337.045 611594.4719 507731.3832 478630.5455 480269.0698 562703.7563 342124.8981 1.368568848 1.96715581 2.889401427 0.570952439 1.787635087 1.484052713 1.398993608 1.403782865 1.644731966 1 18.38416357 -5.262615254 24.99934759 1.372704624 2.064253358 0.343523481 0.470766576 127.3894365 2708349.802 0.128734072 0.203808033 5.46E-06 5.262615254 0.691548734 GFAFISFHR ddPTM_HeLa_A486_30min_R1 2 GFAFISFHR 9 0 K7ENA8;O75821;K7EP16 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 0 ; ; 167.33 1.46E-06 258580000 346100 523990 596530 74999 634610 417850 436240 479360 492670 367380 FALSE FALSE TRUE 321840.1773 482467.1241 827522.3916 174601.4622 555011.2963 366299.9154 327088.1379 370220.1924 535375.0323 275385.6568 1.168688962 1.751968965 3.004958215 0.634025259 2.015396527 1.330134328 1.18774573 1.344369916 1.944091928 1 18.07109389 -5.281945062 24.99971676 1.385205823 1.952882118 0.200378979 0.568157613 1378.571464 1680696.589 0.157762526 0.2342967 5.22E-06 5.281945062 0.567676294 GFAFISFHRR ddPTM_HeLa_A485_30min_R1 2 GFAFISFHRR 10 1 K7ENA8;O75821;K7EP16 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 0 ; ; 87.913 0.0096465 53049000 27268 85656 51123 6656.6 45086 64102 69956 146215 27759 14824.4 FALSE FALSE TRUE 33333.67253 95672.72409 70035.52511 7020.233203 40597.07953 67458.2816 55009.32911 110355.542 33329.97668 11128.9499 2.995221725 8.596743172 6.293093752 0.630808231 3.647880518 6.061513637 4.942903831 9.916078602 2.994889632 1 13.44202985 -6.276400702 24.00771763 5.537821059 4.556215847 0 2.913225841 2524.783086 4051382.29 1.038727087 0.92016406 5.29E-07 6.276400702 -0.981605212 GFAFISFHRR ddPTM_HeLa_A486_30min_R1 1 GFAFISFHRR 10 1 K7ENA8;O75821;K7EP16 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 0 63.283 0.031708 9747200 10537 7131.9 7490.4 2113 14564 4689.1 6535.3 8316.3 4131.2 10166 FALSE FALSE TRUE 9798.410713 6566.74227 10390.88348 4919.170785 12737.24732 4110.606517 4900.098817 6422.860034 4489.295742 7620.36743 1.28581867 0.861735649 1.363567252 0.645529344 1.671474169 0.539423664 0.643026581 0.842854376 0.589118016 1 12.89564485 -6.309206349 24.99994181 0.708071762 1.130846178 0.368200031 0.287857475 437.9740682 229222.4922 0.093887314 0.082800992 4.91E-07 6.309206349 0.422774416 GFAFITFMFPEHAVK ddPTM_HeLa_A485_30min_R1 1 GFAFITFMFPEHAVK 15 0 Q9Y4C8 Q9Y4C8 RBM19 Probable RNA-binding protein 19 0 0 114.7 0.00024132 4384000 4572 6255.5 4370.6 4673.1 5221 5667.8 8132.6 7678.2 3312.3 6066.9 FALSE FALSE TRUE 5589.025627 6987.026309 5987.466816 4928.37962 4701.178908 5964.557244 6395.003573 5795.109411 3977.048228 4554.533483 1.227134601 1.534081665 1.314616928 1.082082202 1.032197683 1.309586869 1.404096291 1.272382656 0.873206497 1 12.15308757 -1.000107494 0.041924396 0.350049331 2.677571836 0.26065495 0.166064967 1077.522704 3.44232344 50.88691848 174.5708666 0.099975252 1.000107494 2.327522505 GFAFVQYVNER ddPTM_HeLa_A485_30min_R1 2 GFAFVQYVNER 11 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;G3V4M8;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 ; ; 170.47 6.19E-06 122681000 770260 449110 648530 1335960 1086390 645310 983050 689180 765830 1751350 FALSE FALSE TRUE 941601.6796 501629.5078 888448.2346 1408940.112 978225.1971 679097.4338 773013.3367 520157.5244 919525.0564 1314770.676 0.716171798 0.381533842 0.675743877 1.071624229 0.74402724 0.516513979 0.587945374 0.395626046 0.699380563 1 20.32637975 -10.86470127 2.075694071 1.188845276 0.639373934 0.245253411 0.187682733 3552494.569 1650478.34 3304030.29 0.054705878 1.37E-11 10.86470127 -0.549471341 GFAFVQYVNER ddPTM_HeLa_A486_30min_R1 1 GFAFVQYVNER 11 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;G3V4M8;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 150.53 0.00043162 50507000 261640 607450 459750 285630 730900 825560 861570 808670 636580 601490 FALSE FALSE TRUE 243300.3871 559313.4497 637777.5125 664961.0749 639223.7066 723710.8009 645996.0732 624553.4941 691759.2669 450872.989 0.539620676 1.240512214 1.41453919 1.474830143 1.417746732 1.605132307 1.432767296 1.385209381 1.534266376 1 18.78236156 -4.226658704 2.210169073 1.433410967 0.255781408 0.742371942 0.152435226 0.316668483 1.650688523 0.037009416 0.756268099 5.93E-05 4.226658704 -1.177629559 GFAFVTFDDHDSVDK ddPTM_HeLa_A485_30min_R1 1 GFAFVTFDDHDSVDK 15 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 94.551 0.0018142 117480000 146190 175010 151770 50515 111350 217400 107720 160140 186240 53203 FALSE FALSE TRUE 178709.4612 195475.8971 207916.0387 53274.50654 100263.603 228782.7278 84704.74201 120865.4139 223616.6597 39940.47123 4.47439541 4.894181042 5.205648113 1.333847721 2.510325991 5.728092854 2.120774728 3.026138906 5.598748658 1 15.28556373 -5.21132545 24.9943759 3.180793903 4.861686462 0.232381047 1.495618984 589.9622571 294243.2338 0.401656887 0.695689052 6.15E-06 5.21132545 1.680892559 GFAFVTFDDHDSVDK ddPTM_HeLa_A486_30min_R1 2 GFAFVTFDDHDSVDK 15 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 144.27 1.70E-07 194604000 420230 668360 653090 80823 691440 481010 292060 443470 498820 167945 FALSE FALSE TRUE 390774.0471 615396.7195 905983.9384 188160.0286 604713.1478 421667.8768 218983.4989 342501.5619 542058.1192 125890.4789 3.10407944 4.888349977 7.196604116 1.494632718 4.803485961 3.349481872 1.739476257 2.720631179 4.305791225 1 16.94180965 -5.936882186 1.017054672 2.609736754 4.745327908 0.224021458 1.577831381 0.830091562 1.849765452 0.774182628 0.981395343 1.16E-06 5.936882186 2.135591154 GFAFVTFES(ph)PADAK ddPTM_HeLa_A485_30min_R1 2 GFAFVTFESPADAK 14 0 P38159;H0Y6E7;H3BT71;H3BR27;P38159-3;O75526;Q8N7X1;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL2;RBMXL3;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1" 1 0 GFAFVTFES(1)PADAK;GFAFVTFES(1)PADAK ; 209.39 3.43E-22 147843000 243850 217788 189160 331900 254740 225054 324750 275550 213221 457170 TRUE FALSE FALSE 298093.5912 243256.4121 259138.1556 350030.8566 229377.1912 236837.4794 255364.5095 207970.9305 256012.4989 343205.9326 0.868556056 0.708776828 0.755051504 1.019885798 0.668336906 0.690073967 0.744056222 0.60596543 0.74594427 1 18.38871497 GFAFVTFES(ph)PADAK ddPTM_HeLa_A486_30min_R1 4 GFAFVTFESPADAK 14 0 P38159;H0Y6E7;H3BT71;H3BR27;P38159-3;O75526;Q8N7X1;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL2;RBMXL3;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1" 1 0 GFAFVTFES(1)PADAK;GFAFVTFES(1)PADAK;GFAFVTFES(1)PADAK;GFAFVTFES(1)PADAK ;;; 234.85 3.96E-35 762753000 849667 821840 540101 450669 773658 835232 1021912 988008 685426 1153270 TRUE FALSE FALSE 790109.731 756714.4053 749242.5716 1049180.208 676618.5996 732189.5679 766218.8089 763060.1465 744839.2776 864483.6855 0.913967197 0.875336826 0.866693709 1.213649517 0.782685215 0.846967479 0.886331138 0.882677324 0.861600155 1 19.72147921 GFAFVTFES(ph)PADAKDAAR ddPTM_HeLa_A485_30min_R1 1 GFAFVTFESPADAKDAAR 18 1 P38159;H0Y6E7;H3BT71;H3BR27;P38159-3;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GFAFVTFES(1)PADAKDAAR 194.08 8.83E-19 143260000 49804 110510 66964 47075 112120 125250 137060 320300 59834 69085 TRUE FALSE FALSE 60882.72798 123433.1832 91736.7702 49646.58805 100956.9391 131807.8963 107776.0113 241745.9228 71842.13497 51863.38092 1.173905883 2.379967928 1.76881585 0.95725707 1.946593865 2.541444349 2.078075309 4.661206395 1.385218891 1 15.66242864 -6.148783184 3.727993078 2.548706772 1.624945736 0.096167126 0.984721625 0.455922587 11.41252968 0.327811137 0.327944429 7.10E-07 6.148783184 -0.923761036 GFAFVTFES(ph)PADAKDAAR ddPTM_HeLa_A486_30min_R1 1 GFAFVTFESPADAKDAAR 18 1 P38159;H0Y6E7;H3BT71;H3BR27;P38159-3;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GFAFVT(0.158)FES(0.842)PADAKDAAR 65.25 0.0059281 260090000 62413 55231 31980 34393 83844 42204 74215 73258 32679 71072 TRUE FALSE FALSE 58038.171 50854.29441 44363.51245 80068.64213 73327.50371 36997.29958 55645.62203 56578.75261 35511.64203 53275.1086 1.089405025 0.954560127 0.832724956 1.502927807 1.376393322 0.694457516 1.044495703 1.062011024 0.666570993 1 15.70117401 -6.2646839 24.995342 0.906819538 1.142124807 0.258177477 0.217551711 496.9184363 3828175.232 0.080604304 0.073995242 5.44E-07 6.2646839 0.235305269 GFAFVYFENVDDAK ddPTM_HeLa_A486_30min_R1 1 GFAFVYFENVDDAK 14 0 P62995;P62995-3;H7BXF3 P62995 TRA2B Transformer-2 protein homolog beta 0 0 143.79 2.16E-05 14830000 6524.6 7886.3 5501.8 4942.1 8036.4 9637.8 12451 9925.1 8073.1 11360 FALSE FALSE TRUE 6067.259233 7261.360867 7632.244303 11505.45856 7028.399776 8448.786226 9335.628107 7665.371393 8772.882808 8515.382059 0.712505815 0.852734594 0.896289121 1.351138267 0.825376915 0.992179349 1.09632522 0.900179386 1.030239483 1 13.05585555 -4.73929172 2.599803911 1.020541783 0.748924698 0.350617306 0.134200894 0.311154175 4.12178011 0.035770809 0.118389545 1.82E-05 4.73929172 -0.271617085 GFAFVYFER ddPTM_HeLa_A485_30min_R1 2 GFAFVYFER 9 0 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 0 0 ; ; 151.27 6.44E-05 40464000 67067 92481 109545 69850 108997 76551 99092 101743 87809 95104 FALSE FALSE TRUE 81985.82277 103295.8485 150070.254 73665.72863 98144.87597 80559.09199 77920.18469 76790.36972 105431.4609 71396.32306 1.148319959 1.446795074 2.101932531 1.031786029 1.374648886 1.128336706 1.091375317 1.075550763 1.476707152 1 16.12356216 GFAFVYFER ddPTM_HeLa_A486_30min_R1 2 GFAFVYFER 9 0 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 0 0 ; ; 160.75 1.18E-05 35326000 67705 79659 82178 32017 110036 75089 84499 87940 75311 87796 FALSE FALSE TRUE 62959.22913 73346.53073 113999.5224 74537.19405 96234.25884 65825.28263 63356.45646 67917.98172 81839.01812 65811.31014 0.956662753 1.11449735 1.732217793 1.132589427 1.462275384 1.000212311 0.962698605 1.032010783 1.243540327 1 16.00604792 -6.282526772 24.74265644 1.044380947 1.287446272 0.23279588 0.210263332 1099.094271 1289605.605 0.075554744 0.066702819 5.22E-07 6.282526772 0.243065325 GFAS(ph)PLGAGR ddPTM_HeLa_A485_30min_R1 1 GFASPLGAGR 10 0 Q8TDN4 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 GFAS(1)PLGAGR 115.57 0.00048197 110750000 77960 110730 110140 75565 112810 97097 85376 103190 91357 90687 TRUE FALSE FALSE 95301.93304 123678.9103 150885.3693 79692.92461 101578.2403 102180.8488 67134.72014 77882.4907 109691.5119 68080.39987 1.399843908 1.816659575 2.216282066 1.170570748 1.492033544 1.500884968 0.986109369 1.143978162 1.611205459 1 16.05495189 -5.283075658 24.91505734 1.284889675 1.811501677 0.45369995 0.270691201 689.642712 794150.1576 0.077340025 0.114830158 5.21E-06 5.283075658 0.526612002 GFAS(ph)PLGAGR ddPTM_HeLa_A486_30min_R1 1 GFASPLGAGR 10 0 Q8TDN4 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 GFAS(1)PLGAGR 144.7 5.57E-06 94566000 69815 87114 82109 26551 101690 64918 80709 73326 64718 67799 TRUE FALSE FALSE 64921.32903 80210.76938 113903.8038 61812.06981 88935.09198 56909.0772 60514.75455 56631.2705 70327.80835 50821.6891 1.277433517 1.578278306 2.24124396 1.216253747 1.749943647 1.119779334 1.190726944 1.114313032 1.383814855 1 15.6331567 -6.267300935 24.90296765 1.170683886 1.6236242 0.398405988 0.276766004 488.5252607 2075505.605 0.095796973 0.086742461 5.40E-07 6.267300935 0.452940314 GFCFITFK ddPTM_HeLa_A485_30min_R1 2 GFCFITFK 8 0 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 ; ; 186.87 1.55E-06 195239000 308990 409500 338420 320320 331630 361440 398770 405110 306150 396710 FALSE FALSE TRUE 377723.7595 457387.4628 463615.6408 337818.2705 298611.7528 380364.4395 313569.5318 305756.1373 367591.4968 297817.4979 1.268306134 1.535797816 1.55671055 1.134313037 1.002666918 1.277172907 1.052891566 1.026656054 1.234284417 1 18.18406899 -5.303696825 7.936437982 1.105340038 1.461624609 0.664666098 0.11376458 0.16408213 28.29981369 0.031356477 0.046947913 4.97E-06 5.303696825 0.356284571 GFCFITFK ddPTM_HeLa_A486_30min_R1 2 GFCFITFK 8 0 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 ; ; 175.75 4.22E-06 170510000 364370 429410 283560 104344 322260 364700 376800 348940 346320 434820 FALSE FALSE TRUE 338829.5446 395381.9877 393362.026 242918.1053 281839.1458 319707.022 282520.6546 269493.9793 376339.2964 325938.2418 1.039551366 1.213057988 1.206860612 0.745288751 0.864701068 0.980882207 0.866791982 0.826825284 1.154633756 1 18.31423911 -5.243546022 24.98961088 0.910690399 1.159146812 0.465672757 0.114162485 684.5965379 956096.6542 0.030494888 0.052677645 5.71E-06 5.243546022 0.248456413 GFENVIHDKLPLQES(ph)EEEER ddPTM_HeLa_A485_30min_R1 2 GFENVIHDKLPLQESEEEER 20 1 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 GFENVIHDKLPLQES(1)EEEER;GFENVIHDKLPLQES(1)EEEER ; 262.26 4.79E-59 1200480000 933190 1758320 663110 630980 522650 1251660 1081930 1322090 553030 681170 TRUE FALSE FALSE 1140774.896 1963940.229 908421.9833 665448.8397 470613.1309 1317194.982 850766.8169 997845.3545 664018.0483 511366.855 2.230834644 3.840570051 1.776458475 1.301313985 0.92030433 2.575831752 1.663711304 1.951329745 1.29851601 1 18.96399913 -4.877897897 7.298282034 1.59046257 3.025561336 0.509111563 0.580989943 0.164163865 9.724973886 0.147906363 0.311600802 1.32E-05 4.877897897 1.435098767 GFENVIHDKLPLQES(ph)EEEER ddPTM_HeLa_A486_30min_R1 2 GFENVIHDKLPLQESEEEER 20 1 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 GFENVIHDKLPLQES(1)EEEER;GFENVIHDKLPLQES(1)EEEER ; 187.98 2.27E-19 543720000 458070 338570 146130 76556 173092 232219 250656 224475 209567 470590 TRUE FALSE FALSE 425961.6585 311740.4801 202715.4495 178226.2369 151381.1873 203570.1808 187939.2176 173366.9428 227732.4363 352751.201 1.207541342 0.883740379 0.574669764 0.505246294 0.429144357 0.577092807 0.532781227 0.491470879 0.6455894 1 18.42829147 -1.52788964 9.302428663 0.653777084 0.946742127 0 0.245991529 0 0 0.058822164 0 0.029655849 1.52788964 0.292965043 GFENVIHDKLPLQES(ph)EEEEREER ddPTM_HeLa_A485_30min_R1 5 GFENVIHDKLPLQESEEEEREER 23 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER ;;;; 311.14 2.89E-105 7972060000 1658970 1581710 1868630 2117850 2674560 2349690 3079880 3181150 1995160 2901460 TRUE FALSE FALSE 2028002.153 1766677.225 2559913.997 2233542.783 2408271.415 2472716.135 2421838.478 2400967.975 2395570.311 2178179.419 0.931053767 0.811079753 1.175253964 1.025417265 1.105635006 1.135221513 1.111863631 1.102282004 1.099803942 1 21.05469136 -4.758807542 25 1.09810184 0.871066716 0.728567252 0.054498435 29.41806113 279428.5578 0.012988567 0.031277171 1.74E-05 4.758807542 -0.227035125 GFENVIHDKLPLQES(ph)EEEEREER ddPTM_HeLa_A486_30min_R1 3 GFENVIHDKLPLQESEEEEREER 23 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER ;; 289.76 2.78E-89 7432600000 1013510 1135780 846120 512020 1347010 1174150 1500380 1382760 963530 1409660 TRUE FALSE FALSE 942468.1828 1045776.656 1173760.324 1192008.436 1178055.445 1029295.311 1124969.055 1067935.733 1047049.556 1056671.961 0.891921256 0.989689038 1.110808621 1.128078042 1.114873385 0.974091628 1.06463415 1.010659668 0.990893669 1 20.01109614 -9.722592247 10.93773606 1.000000305 1.035875968 0.011667398 0.071074971 0 0 0.073511042 0.017829047 1.89E-10 9.722592247 0.035875663 GFFAAAILFLSQSHVAR ddPTM_HeLa_A486_30min_R1 2 GFFAAAILFLSQSHVAR 17 0 Q9UBB6-2;Q9UBB6;Q9UBB6-3 Q9UBB6-2 NCDN Neurochondrin 0 0 ; ; 126.77 4.91E-06 8129500 12581 12060.2 9792.8 6343.9 16130.1 11761.4 13478.9 12702 9515.1 11460.3 FALSE FALSE TRUE 11699.13687 11104.50583 13584.83442 14768.9198 14106.91245 10310.39805 10106.33665 9810.031883 10339.87653 8590.566286 1.361858634 1.292639561 1.581366579 1.719202124 1.642139992 1.200200046 1.17644592 1.141954041 1.20363154 1 13.06853752 -6.356941581 5.551599665 1.149656988 1.520548027 0.685085165 0.12736581 0.159031814 7.405035713 0.051406971 0.045178679 4.40E-07 6.356941581 0.370891039 GFFTQHAVQVFNSYIQCHLAAPDGTR ddPTM_HeLa_A485_30min_R1 1 GFFTQHAVQVFNSYIQCHLAAPDGTR 26 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 0 0 126.99 6.88E-12 5857700 2468.3 2615.4 2795.3 2426.6 3409.9 2424.5 4463.5 4103.4 1733.4 3459.6 FALSE FALSE TRUE 3017.364819 2921.248279 3829.397792 2559.159014 3070.398383 2551.443071 3509.836762 3097.034716 2081.27748 2597.185389 1.16178261 1.124774647 1.47444145 0.985358621 1.182202239 0.982387735 1.351400164 1.192458085 0.801358844 1 11.34273328 -7.750056603 24.99137331 0.900679432 1.182166088 0.369052434 0.147055778 194.6307821 427326.4492 0.09848871 0.036500454 1.78E-08 7.750056603 0.281486656 GFGDGYNGYGGGPGGGNFGGS(ph)PGYGGGR ddPTM_HeLa_A485_30min_R1 4 GFGDGYNGYGGGPGGGNFGGSPGYGGGR 28 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(0.971)PGY(0.029)GGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR ;;; 223.62 1.51E-38 5284800000 1200570 1655070 1620220 1235140 1876780 1524470 1679720 1887940 1531790 1718480 TRUE FALSE FALSE 1467632.655 1848616.039 2219606.801 1302612.571 1689921.193 1604288.892 1320834.1 1424919.755 1839206.203 1290094.562 1.13761634 1.43293065 1.720499307 1.009703171 1.309920406 1.243543643 1.023827352 1.104507992 1.425636737 1 20.29904539 -5.280649617 24.89765966 1.168050729 1.43060702 0.310835947 0.18444955 938.2890913 1216078.461 0.051948432 0.077185584 5.24E-06 5.280649617 0.262556291 GFGDGYNGYGGGPGGGNFGGS(ph)PGYGGGR ddPTM_HeLa_A486_30min_R1 4 GFGDGYNGYGGGPGGGNFGGSPGYGGGR 28 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR ;;; 253.71 4.32E-63 4896870000 1969620 2097440 1819010 696220 2343100 1955020 2185430 2216840 1708110 2127890 TRUE FALSE FALSE 1831559.809 1931231.216 2523379.387 1620835.345 2049206.549 1713829.51 1638612.299 1712113.925 1856170.35 1595052.494 1.148275569 1.210763422 1.582003976 1.016164265 1.284726714 1.074465898 1.027309324 1.073390332 1.163704867 1 20.60517247 -5.991532334 1.355078542 1.068574311 1.278899558 0.279476289 0.140775981 0.5638114 2.141141674 0.059276134 0.067342255 1.02E-06 5.991532334 0.210325247 GFGDLKS(ph)PAGLQVLNDYLADK ddPTM_HeLa_A486_30min_R1 2 GFGDLKSPAGLQVLNDYLADK 21 1 P24534;C9JZW3;F2Z2G2;F8WF65 P24534 EEF1B2 Elongation factor 1-beta 1 0 GFGDLKS(1)PAGLQVLNDYLADK;GFGDLKS(1)PAGLQVLNDYLADK ; 227.41 3.64E-36 148280000 186684 189257 91515 106419 159451 230823 261630 240889 153382 310860 TRUE FALSE FALSE 173598.4156 174259.5861 126952.0589 247748.8101 139451.1688 202346.4051 196167.4068 186043.8333 166677.2753 233018.6326 0.744998002 0.747835416 0.544815054 1.063214591 0.598455013 0.868370065 0.841852879 0.79840754 0.715295912 1 17.83008579 -14 0.167057924 1.843834644 0.717576928 0.205082463 0.136322292 213.0747365 1.99428725 60.00471433 0.496252859 1.00E-14 14 -1.126257716 GFGEYSRS(ph)PTF ddPTM_HeLa_A485_30min_R1 2 GFGEYSRSPTF 11 1 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 0 GFGEYS(0.001)RS(0.999)PTF;GFGEYSRS(1)PTF ; 151.26 7.88E-06 407910000 435540 800200 941650 480870 1266310 983250 1130830 1567440 780990 725980 TRUE FALSE FALSE 532424.3704 893776.4292 1290005.52 507138.7105 1140231.73 1034731.45 889218.9325 1183022.882 937727.5293 545006.5467 0.976913715 1.639937051 2.366954174 0.930518566 2.092143181 1.89856701 1.631574773 2.170658113 1.720580303 1 19.05591403 -4.288095249 4.489132708 1.768929088 0.940131779 0.196826874 0.44273375 0.253668396 12.19460766 0.103721359 0.621391992 5.15E-05 4.288095249 -0.828797309 GFGEYSRS(ph)PTF ddPTM_HeLa_A486_30min_R1 3 GFGEYSRSPTF 11 1 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 0 GFGEYS(0.002)RS(0.998)PTF;GFGEYSRS(1)PTF;GFGEYSRS(1)PTF ;; 158.42 2.25E-06 468500000 687140 844800 1121780 388435 1781300 900290 1196080 1418040 771170 846660 TRUE FALSE FALSE 638975.0344 777854.9713 1556163.258 904296.3104 1557872.744 789221.3733 896808.1332 1095183.248 838015.6365 634650.8252 1.006813525 1.225642417 2.45199911 1.424872189 2.454692694 1.243552111 1.413073296 1.725646929 1.320435747 1 19.27560354 -8.22040787 0.851088783 0.995726144 1.658634332 0.142219228 0.466887703 1.824919529 2.714701368 0.459306675 0.160021283 6.02E-09 8.22040787 0.662908188 GFGFGQGAGALVHS(ph)E ddPTM_HeLa_A485_30min_R1 8 GFGFGQGAGALVHSE 15 0 P21291;E9PP21 P21291 CSRP1 Cysteine and glycine-rich protein 1 1 0 GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E ;;;;;;; 187.97 5.45E-18 22041290000 3217568 5086110 5446590 3606334 5879130 4701250 5402350 6460290 4696160 4736060 TRUE FALSE FALSE 3933304.901 5680886.321 7461510.293 3803338.895 5293783.174 4947400.18 4248093.789 4875893.748 5638636.236 3555447.403 1.106275654 1.59779788 2.098613605 1.069721603 1.488921808 1.391498627 1.194812722 1.371386831 1.585914682 1 21.76159968 -5.309471878 24.99991467 1.323057962 1.600589629 0.192434299 0.279463685 675.4165743 351538.7492 0.078394116 0.116277536 4.90E-06 5.309471878 0.277531668 GFGFGQGAGALVHS(ph)E ddPTM_HeLa_A486_30min_R1 8 GFGFGQGAGALVHSE 15 0 P21291;E9PP21 P21291 CSRP1 Cysteine and glycine-rich protein 1 1 0 GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E ;;;;;;; 193.98 1.80E-18 21691970000 5106020 5814230 5621910 1760188 6564110 4685670 5608420 5873540 4581120 5254100 TRUE FALSE FALSE 4748114.366 5353489.24 7798864.112 4097806.619 5740778.116 4107599.676 4205133.996 4536263.16 4978215.17 3938439.162 1.205582763 1.3592921 1.980191592 1.040464623 1.457627725 1.042951156 1.06771587 1.151792112 1.264007127 1 21.90919256 -5.837127777 1.583766573 1.122299872 1.468650607 0.267944426 0.239272822 0.513017216 2.666904985 0.089538525 0.113680069 1.46E-06 5.837127777 0.346350735 GFGFILFK ddPTM_HeLa_A485_30min_R1 3 GFGFILFK 8 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ;; ;; 187.77 1.33E-06 1191470500 1429030 1851326 1690820 1443809 1971008 1771934 2223180 2285810 1296136 1930289 FALSE FALSE TRUE 1746912.793 2067822.471 2316324.679 1522680.63 1774767.523 1864709.724 1748179.431 1725211.513 1556258.606 1449103.477 1.205512803 1.426966745 1.598453607 1.050774258 1.224734846 1.286802326 1.206386886 1.190537143 1.07394581 1 20.46672919 -6.961785235 0.313956145 0.978623767 1.414419491 0.393001363 0.132623229 1.741199002 0.507586299 0.212053578 0.273078891 1.09E-07 6.961785235 0.435795724 GFGFILFK ddPTM_HeLa_A486_30min_R1 4 GFGFILFK 8 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ;;; ;;; 187.77 1.33E-06 1159487000 2020053 2126406 1685434 794476 2391710 1958179 2430617 2384582 1786973 2526463 FALSE FALSE TRUE 1878457.716 1957901.844 2338079.182 1849580.279 2091719.43 1716598.784 1822450.918 1841664.734 1941869.258 1893820.22 0.991888087 1.033837227 1.234583493 0.976639841 1.104497358 0.906421193 0.962314637 0.97246017 1.025371489 1 20.85286795 -6.250290488 24.65051268 0.970904828 1.070522145 0.300128495 0.072429917 772.4156866 1707831.821 0.024051514 0.023823716 5.62E-07 6.250290488 0.099617317 GFGFITFTNPEHASVAMR ddPTM_HeLa_A486_30min_R1 1 GFGFITFTNPEHASVAMR 18 0 P98179 P98179 RBM3 RNA-binding protein 3 0 0 50.722 0.028576 10664000 20080 19141 16002 5933.8 22223 13989 18449 22182 15070 15158 FALSE FALSE TRUE 18672.49569 17624.19745 22198.40295 13814.18628 19435.58412 12263.17941 13832.86507 17131.64283 16376.27973 11362.33814 1.643367366 1.55110658 1.953682656 1.215787289 1.71052682 1.07928309 1.21743121 1.507756821 1.441277274 1 13.47197212 -5.6649613 1.399256116 1.299158146 1.680400143 0.349434687 0.230720102 0.503961006 2.047659131 0.084172816 0.129099938 2.16E-06 5.6649613 0.381241998 GFGFVCFS(ph)SPEEATK ddPTM_HeLa_A486_30min_R1 2 GFGFVCFSSPEEATK 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YB86;A0A6I8PS38;A0A6I8PLA1;Q4VXU2;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;H0YEU6 P11940;H0Y5F5 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 1 0 GFGFVCFS(0.5)S(0.5)PEEATK;GFGFVCFS(0.579)S(0.421)PEEATK ; 99.568 0.00062353 105037000 348890 418720 249230 194615 443980 389920 528010 473900 347920 516260 TRUE FALSE FALSE 324434.6127 385539.1022 345738.5306 453073.5553 388291.8885 341815.6348 395896.3133 366003.3152 378077.9857 386985.1357 0.838364533 0.996263336 0.893415531 1.170777669 1.003376752 0.88327846 1.023027183 0.945781327 0.976983225 1 18.56191863 -4.259287951 23.88011379 0.987448983 0.838364441 0.261744912 0.075434505 148.1686898 1644397.382 0.018828813 0.11990651 5.50E-05 4.259287951 -0.149084543 GFGFVDFNS(ph)EEDAK ddPTM_HeLa_A485_30min_R1 1 GFGFVDFNSEEDAK 14 0 P19338;H7BY16 P19338 NCL Nucleolin 1 0 GFGFVDFNS(1)EEDAK 142.1 1.68E-05 0 53850 56353 58049 67837 76998 63977 80833 85605 45369 95035 TRUE FALSE FALSE 65828.74672 62942.99314 79523.74072 71542.76354 69331.80876 67326.73679 63562.36921 64610.23953 54474.14215 71344.52349 0.922688155 0.88224001 1.114643939 1.00277863 0.971788799 0.943684722 0.89092149 0.905608957 0.763536421 1 16.12251507 -6.63051072 1.938194576 0.87794587 0.982728474 0.221276339 0.077651909 0.487989567 3.737864808 0.037781584 0.026546357 2.34E-07 6.63051072 0.104782605 GFGFVLFK ddPTM_HeLa_A485_30min_R1 4 GFGFVLFK 8 0 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44;D6RBQ9;A0A087WUK2;O14979-3;O14979-2;O14979 Q14103-3 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like 0 0 ;;; ;;; 181.83 2.76E-06 2232162000 2648547 3254596 3055506 2458672 3507075 3006764 3980554 3748805 2380950 3538140 FALSE FALSE TRUE 3237707.143 3635192.691 4185864.82 2592983.026 3157898.299 3164193.514 3130076.12 2829404.696 2858784.826 2656146.813 1.218948865 1.368596297 1.575916211 0.976219768 1.188902015 1.191272071 1.178427376 1.065229031 1.076290216 1 21.34090346 -5.868605286 0.44512638 1.028959866 1.402908549 0.381380294 0.134341412 1.651900144 0.624957526 0.129029343 0.277917403 1.35E-06 5.868605286 0.373948683 GFGFVLFK ddPTM_HeLa_A486_30min_R1 4 GFGFVLFK 8 0 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44;D6RBQ9;A0A087WUK2;O14979-3;O14979-2;O14979 Q14103-3 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like 0 0 ;;; ;;; 181.83 2.76E-06 2395996000 1758409 1906287 1486377 604331 2363740 1645436 2103485 1913801 1559687 1897069 FALSE FALSE TRUE 1635153.61 1755225.876 2061941.981 1406913.109 2067257.688 1442438.836 1577170.805 1478070.29 1694881.925 1422030.575 1.14987233 1.23430952 1.449998346 0.9893691 1.453736456 1.014351493 1.109097675 1.039408235 1.191874461 1 20.43952105 -6.30096388 24.99875089 1.075793829 1.250307642 0.314321279 0.136058617 679.3046949 429649.5614 0.045231203 0.039890723 5.00E-07 6.30096388 0.174513813 GFGFVSFER ddPTM_HeLa_A486_30min_R1 1 GFGFVSFER 9 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 98.997 0.021233 14714000 16708 18459 15145 8017.8 19026 17012 21577 19367 15960 21525 FALSE FALSE TRUE 15536.85548 16996.24161 21009.5496 18665.8436 16639.58167 14913.23241 16178.20638 14957.55688 17343.42565 16134.9999 0.962928762 1.053377237 1.302110303 1.156854274 1.031272499 0.924278432 1.002677811 0.927025533 1.074894686 1 13.97790595 -5.924350812 4.759176172 0.981693948 1.126245363 0.328552227 0.089309799 0.245822463 10.36198359 0.029980324 0.034053445 1.19E-06 5.924350812 0.144551415 GFGFVTFDDHDPVDK ddPTM_HeLa_A485_30min_R1 2 GFGFVTFDDHDPVDK 15 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 223.06 4.13E-33 562010000 730810 627390 624350 962210 815410 748200 942110 747260 711820 1284940 FALSE FALSE TRUE 893376.1632 700757.8029 855323.0464 1014773.096 734224.9173 787374.5951 740820.5022 563993.3133 854675.7448 964628.1056 0.926135324 0.726453852 0.88668684 1.051983754 0.76114817 0.81624679 0.767985608 0.584674353 0.886015802 1 19.87961332 GFGFVTFDDHDPVDK ddPTM_HeLa_A486_30min_R1 3 GFGFVTFDDHDPVDK 15 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;; ;; 199.31 1.03E-24 712890000 847270 1011550 641310 403321 1030450 1041950 1119580 1067310 749200 1213350 FALSE FALSE TRUE 787880.7483 931391.094 889642.4069 938951.6707 901201.3524 913404.8028 839449.2423 824306.8122 814141.2592 909519.2624 0.866260651 1.024047684 0.978145756 1.032360401 0.990854608 1.004272081 0.922959279 0.90631045 0.895133608 1 19.79474467 -6.77112005 24.50862362 0.923293345 0.98696509 0.191926582 0.050361959 215.7154885 546121.4365 0.020153442 0.013784186 1.69E-07 6.77112005 0.063671746 GFGFVTFDDHDPVDK(ac)IVLQK ddPTM_HeLa_A486_30min_R1 1 GFGFVTFDDHDPVDKIVLQK 20 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 GFGFVTFDDHDPVDK(1)IVLQK 141.86 2.30E-10 16020000 6086.9 7678.9 7068.3 2709.1 8788.6 8541.9 8240.7 8259.6 6751 10620 FALSE TRUE FALSE 5660.239743 7070.395998 9805.335056 6306.92171 7686.251838 7488.087226 6178.789699 6379.069386 7336.182116 7960.682875 0.711024397 0.888164509 1.231720345 0.792258881 0.965526696 0.94063378 0.776163276 0.801321882 0.921551861 1 12.95867648 -6.674325761 24.99124224 0.858163158 0.930257878 0.018597953 0.139714364 74.32397493 21307.10648 0.053869496 0.041727119 2.12E-07 6.674325761 0.07209472 GFGFVTFDDHDPVDKIVLQK ddPTM_HeLa_A485_30min_R1 2 GFGFVTFDDHDPVDKIVLQK 20 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 236.16 1.67E-45 157771000 118485 163237 109929.7 99788.5 217103 248299 303267 477755 145216.5 171669 FALSE FALSE TRUE 144841.5795 182326.1472 150597.2706 105239.6931 195487.463 261299.5517 238471.528 360584.8372 174360.1195 128875.0776 1.123891307 1.414751017 1.168552317 0.816602364 1.516875618 2.027541372 1.850408414 2.797940795 1.352939007 1 16.97561377 -6.025027308 4.59634896 1.913205522 1.151660281 0.307519738 0.462035093 0.213078572 11.16524902 0.146914476 0.154767597 9.44E-07 6.025027308 -0.76154524 GFGFVTFSSMAEVDAAMAARPHS(ph)IDGR ddPTM_HeLa_A485_30min_R1 10 GFGFVTFSSMAEVDAAMAARPHSIDGR 27 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSS(0.001)MAEVDAAMAARPHS(0.999)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSS(0.001)MAEVDAAMAARPHS(0.999)IDGR ;;;;;;;;; 241.7 4.67E-50 595476000 86997.12 115397.7 125168.6 102170.3 132406.6 123464.18 146899.34 173118.2 98037.3 147990.81 TRUE FALSE FALSE 106349.3292 128892.4572 171473.6738 107751.6048 119223.734 129928.5736 115513.096 130660.69 117712.4869 111099.4246 0.957244644 1.160154138 1.543425399 0.969866452 1.073126476 1.169480166 1.03972722 1.176069907 1.059523821 1 16.76149182 GFGFVTFSSMAEVDAAMAARPHS(ph)IDGR ddPTM_HeLa_A486_30min_R1 8 GFGFVTFSSMAEVDAAMAARPHSIDGR 27 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR;GFGFVTFSSMAEVDAAMAARPHS(1)IDGR ;;;;;;; 226.64 1.13E-38 410879000 60850.7 66468 68112.8 51189.7 88256.3 88949.4 94032.1 85818.3 82965.6 102784 TRUE FALSE FALSE 56585.38016 61200.83361 94487.90028 119172.2086 77186.3719 77975.7274 70504.27401 66279.34649 90157.12501 77046.21739 0.734434241 0.794339238 1.226379483 1.546762614 1.001819097 1.012064317 0.915090661 0.860254387 1.170169387 1 16.23343651 -5.974318272 24.99938295 0.981219833 1.092190269 0.028661898 0.223015491 870.1709665 847047.1302 0.076751087 0.087025089 1.06E-06 5.974318272 0.110970436 GFGFVTFSSMAEVDAAMAARPHSIDGR ddPTM_HeLa_A485_30min_R1 2 GFGFVTFSSMAEVDAAMAARPHSIDGR 27 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 147.39 1.70E-08 28672700 8901.1 10345.3 10573.8 9502.9 10585.2 12768.1 13167.3 15378.9 7958.4 14016.5 FALSE FALSE TRUE 10881.11899 11555.09284 14485.48863 10022.01936 9531.300321 13436.61797 10353.99879 11607.20066 9555.577881 10522.4445 1.034086612 1.098137684 1.376627705 0.952442121 0.905806661 1.276948333 0.98399177 1.103089748 0.908113878 1 13.36118228 -7.06285211 0.536370747 0.973620185 1.121928597 0.096621967 0.140636042 2.247654638 1.392450922 0.14160196 0.098549235 8.65E-08 7.06285211 0.148308412 GFGFVTYATVEEVDAAMNARPHK ddPTM_HeLa_A485_30min_R1 4 GFGFVTYATVEEVDAAMNARPHK 23 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;A0A2R8Y4L2;F8VYN5 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ;;; ;;; 304.37 1.19E-92 299901000 246841 239057 258621 286064 315159 258511 340380 283992 264412 408320 FALSE FALSE TRUE 301749.9289 267012.6366 354295.67 301690.952 283780.6634 272046.2362 267655.0324 214342.5167 317477.0631 306533.3386 0.98439514 0.871072092 1.155814476 0.984202741 0.925774223 0.887493143 0.873167772 0.699246998 1.03570158 1 18.22568446 -5.91658781 2.742973591 0.879657699 1.001394813 0.154653602 0.106180903 0.434543094 6.630561399 0.035388364 0.040539485 1.21E-06 5.91658781 0.121737114 GFGFVTYATVEEVDAAMNARPHK ddPTM_HeLa_A486_30min_R1 4 GFGFVTYATVEEVDAAMNARPHK 23 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;A0A2R8Y4L2;F8VYN5 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ;;; ;;; 290.94 6.44E-78 336070000 412195 406320 340758 210354 536995 432106 502144 488267 385258 502845 FALSE FALSE TRUE 383302.2591 374121.7234 472708.6234 489714.7427 469640.0798 378797.1551 376502.2601 377099.2629 418652.4736 376929.339 1.016907466 0.992551348 1.254104084 1.29922161 1.245963185 1.004955348 0.998866952 1.000450811 1.110692192 1 18.52393457 -6.278389422 24.68642145 1.021513343 1.165117785 0.338739254 0.096865992 930.606321 1355350.942 0.038717926 0.034240319 5.27E-07 6.278389422 0.143604443 GFGFVTYATVEEVDAAMNARPHKVDGR ddPTM_HeLa_A485_30min_R1 2 GFGFVTYATVEEVDAAMNARPHKVDGR 27 2 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;A0A2R8Y4L2;F8VYN5 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ; ; 135.1 2.81E-06 106512000 26541 60627 31897 12417 33135 58980 64230 118287 29866 22666.6 FALSE FALSE TRUE 32444.95388 67716.80027 43697.02764 13095.30927 29835.96306 62068.1016 50506.73579 89276.92778 35859.83225 17016.23377 1.906705933 3.979541019 2.567961174 0.769577419 1.753382297 3.647581624 2.96815009 5.246573889 2.107389493 1 14.05462414 -6.264613553 24.9223625 3.257738082 2.236032397 0.070766946 1.27490733 592.6949433 4653586.98 0.442432347 0.406511166 5.44E-07 6.264613553 -1.021705685 GFGFVYFQNHDAADK ddPTM_HeLa_A486_30min_R1 1 GFGFVYFQNHDAADK 15 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 169.3 1.67E-08 44512000 61133 76063 48906 28101 63811 75200 88543 81450 62752 102490 FALSE FALSE TRUE 56847.89239 70035.49086 67843.71295 65420.54815 55807.22937 65922.58858 66388.60489 62905.61304 68191.39389 76825.8369 0.739957997 0.911613771 0.883084593 0.851543579 0.726412254 0.858078366 0.864144246 0.818808041 0.887610167 1 16.22930396 -8.097849555 3.294050708 0.999940478 0.835376076 0.458315487 0.055692294 0.377038515 9.036059485 0.053926109 0.014310111 7.98E-09 8.097849555 -0.164564402 GFGHIGIAVPDVYSACK ddPTM_HeLa_A486_30min_R1 1 GFGHIGIAVPDVYSACK 17 0 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 0 96.247 0.00083634 34789000 26065 32753 26558 13321 47280 37584 46607 43228 30257 45324 FALSE FALSE TRUE 24237.9781 30157.533 36841.96885 31011.96121 41349.70153 32947.26821 34945.43564 33385.92806 32879.70112 33974.57539 0.713415188 0.887650034 1.084398213 0.912799081 1.217077802 0.969762472 1.028576082 0.982673887 0.967773717 1 15.0521679 -4.436828785 2.830114943 1.021350702 0.705390392 0.590906551 0.079400921 0.206246407 2.764392517 0.019900294 0.121976244 3.66E-05 4.436828785 -0.31596031 GFGHIGIAVPDVYSACKR ddPTM_HeLa_A486_30min_R1 1 GFGHIGIAVPDVYSACKR 18 1 Q04760;Q04760-2 Q04760 GLO1 Lactoylglutathione lyase 0 0 86.378 0.00098548 9128200 24062 33370 30765 12712 40240 33573 42269 38520 30708 42775 FALSE FALSE TRUE 22375.37806 30725.63967 42678.03192 29594.17843 35192.72398 29431.10461 31692.84912 29749.83689 33369.79416 32063.86158 0.697837907 0.958263857 1.33103219 0.922976116 1.097582208 0.917890209 0.988428953 0.927830755 1.040729111 1 14.96866057 -4.302041118 4.408092197 1.025679175 0.685189391 0.419345895 0.115675852 0.173912071 7.271119491 0.028964165 0.163712058 4.99E-05 4.302041118 -0.340489783 GFGLVAYAADS(ph)S(ph)DEEEEHGGHK ddPTM_HeLa_A485_30min_R1 1 GFGLVAYAADSSDEEEEHGGHK 22 0 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 2 0 GFGLVAYAADS(1)S(1)DEEEEHGGHK 69.619 0.0034258 48514000 104760 111080 84815 125530 150680 81740 106320 85738 93982 148450 TRUE FALSE FALSE 128063.5006 124069.8397 116191.5979 132387.386 135677.7701 86019.78001 83603.86345 64710.62107 112843.3253 111444.147 1.1491272 1.113291663 1.042599374 1.187925877 1.217450838 0.771864493 0.75018622 0.580655178 1.012554974 1 16.76596132 -6.267555712 24.7342084 0.792288981 1.137500101 0.613423749 0.125420066 268.4773955 1085708.424 0.042634324 0.038556761 5.40E-07 6.267555712 0.345211121 GFGLVAYAADS(ph)S(ph)DEEEEHGGHK ddPTM_HeLa_A486_30min_R1 1 GFGLVAYAADSSDEEEEHGGHK 22 0 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 2 0 GFGLVAYAADS(1)S(1)DEEEEHGGHK 125.39 1.25E-06 206490000 95938 111880 73384 52946 93801 104120 122180 112190 87316 121410 TRUE FALSE FALSE 89213.24162 103014.2213 101800.2501 123260.9637 82035.60392 91274.73301 91609.27171 86646.78609 94884.62118 91008.14575 0.980277544 1.131923088 1.118583938 1.354394848 0.901409464 1.002929268 1.006605189 0.95207726 1.042594818 1 16.47370806 -5.800272593 24.99996312 0.983923001 1.143290034 0.427641167 0.09180272 157.5726491 101440.971 0.028526409 0.032346465 1.58E-06 5.800272593 0.159367033 GFGLVAYAADSS(ph)DEEEEHGGHK ddPTM_HeLa_A485_30min_R1 2 GFGLVAYAADSSDEEEEHGGHK 22 0 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 1 0 GFGLVAYAADS(0.266)S(0.734)DEEEEHGGHK;GFGLVAYAADS(0.075)S(0.925)DEEEEHGGHK ; 111.84 8.35E-05 539680000 389060 511560 437300 562110 600370 462030 653290 546610 485250 723460 TRUE FALSE FALSE 475605.0548 571382.492 599075.4676 592816.646 540595.0548 486221.1764 513709.2546 412553.0404 582635.224 543114.7363 0.875699043 1.052047484 1.103036665 1.091512725 0.995360683 0.895245781 0.945857699 0.759605683 1.07276637 1 19.05089748 -6.074043777 4.601667914 0.921182274 1.038145448 0.177167414 0.095050595 0.320077815 12.6410745 0.031257825 0.031869188 8.43E-07 6.074043777 0.116963174 GFGLVAYAADSS(ph)DEEEEHGGHK ddPTM_HeLa_A486_30min_R1 1 GFGLVAYAADSSDEEEEHGGHK 22 0 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 1 0 GFGLVAYAADS(0.333)S(0.667)DEEEEHGGHK 69.639 0.0048728 115720000 52702 67229 72688 18431 84829 46614 51536 56312 60993 42409 TRUE FALSE FALSE 49007.86195 61901.5292 100834.7403 42908.29945 74188.95582 40863.23862 38641.14771 43490.98688 66279.92235 31789.51036 1.541636263 1.947231288 3.17195009 1.349762829 2.333755851 1.28543152 1.21553139 1.36809238 2.084962039 1 14.95626318 -6.268338422 24.90281471 1.402854709 2.083441847 0.292527029 0.526834692 702.471891 2535638.149 0.182805084 0.164747217 5.39E-07 6.268338422 0.680587138 GFGS(ph)EEGSR ddPTM_HeLa_A485_30min_R1 6 GFGSEEGSR 9 0 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR ;;;;; 183 3.12E-08 6421910000 3987240 5463920 6033360 4431540 6696540 5196780 5871330 6186770 5256530 5535250 TRUE FALSE FALSE 4874187.782 6102877.914 8265350.933 4673623.809 6029808.965 5468875.365 4616872.381 4669454.957 6311467.355 4155414.044 1.172972833 1.468656998 1.989055927 1.124707131 1.451072962 1.316084344 1.111049906 1.123703898 1.518854027 1 21.9865608 -6.015103396 1.303407025 1.20672711 1.498585769 0.177233552 0.251739753 0.762746903 2.6853431 0.11068758 0.123704498 9.66E-07 6.015103396 0.291858659 GFGS(ph)EEGSR ddPTM_HeLa_A486_30min_R1 5 GFGSEEGSR 9 0 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR;GFGS(1)EEGSR ;;;; 202.57 7.78E-10 6132970000 5084060 6390350 5866600 1786773 7462280 5643020 6047190 6194330 5444210 5657640 TRUE FALSE FALSE 4727693.648 5883955.393 8138304.633 4159697.843 6526291.259 4946841.566 4534119.101 4784016.28 5916118.506 4240930.119 1.114777541 1.387420973 1.918990506 0.980845646 1.538882056 1.166452035 1.069133179 1.128058267 1.395004949 1 22.01594928 -6.341929488 8.71754551 1.153741001 1.394826979 0.180170071 0.252019816 0.682424698 69.02779218 0.088249322 0.077771084 4.55E-07 6.341929488 0.241085978 GFGS(ph)FR ddPTM_HeLa_A485_30min_R1 2 GFGSFR 6 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 GFGS(1)FR;GFGS(1)FR ; 74.415 0.025482 406260000 489710 576390 630990 462370 631900 501000 574850 494370 560660 620860 TRUE FALSE FALSE 598644.3 643793.7966 864419.4587 487628.1023 568985.8173 527231.5853 452028.6014 373124.9824 673179.3193 466091.0281 1.284393528 1.381261938 1.8546151 1.046207871 1.220761145 1.131177288 0.969829012 0.80054101 1.444308684 1 18.83025222 -5.298452561 24.99769418 1.081699243 1.494207487 0.455986233 0.209629083 495.6902416 334774.6615 0.058864098 0.087311948 5.03E-06 5.298452561 0.412508244 GFGS(ph)FR ddPTM_HeLa_A486_30min_R1 3 GFGSFR 6 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 GFGS(1)FR;GFGS(1)FR;GFGS(1)FR ;; 71.296 0.027692 719160000 847450 1127230 981150 307522 974160 894050 953890 958770 952420 957080 TRUE FALSE FALSE 788048.1312 1037904.189 1361077.556 715926.7573 851971.7691 783751.201 715216.6328 740479.0008 1034976.532 717420.9385 1.09844596 1.446715776 1.897181255 0.997917288 1.187547956 1.092456547 0.996927458 1.032140214 1.442634968 1 19.45246033 -5.303762125 24.99937486 1.106581022 1.477375283 0.378638195 0.219359255 489.152659 288933.7156 0.061985749 0.091940504 4.97E-06 5.303762125 0.370794261 GFGS(ph)LPCILNACSGDAK ddPTM_HeLa_A486_30min_R1 1 GFGSLPCILNACSGDAK 17 0 Q8WWL2-4;Q8WWL2-3;Q8WWL2-2;Q8WWL2 Q8WWL2-4 SPIRE2 Protein spire homolog 2 1 0 GFGS(1)LPCILNACSGDAK 122.44 2.69E-05 103070000 91524 88783 67558 44533 100620 86254 107730 104720 77030 126600 TRUE FALSE FALSE 85108.64023 81747.51174 93718.26687 103675.0746 87999.30136 75612.85845 80774.81455 80877.54202 83707.02242 94898.53597 0.896838285 0.861420157 0.987562831 1.092483393 0.92729883 0.796775816 0.851170292 0.85225279 0.882068639 1 16.53409821 -6.010367023 24.98571185 0.865238901 0.961479944 0.211386234 0.074518641 724.3007015 1745651.515 0.02498585 0.026635149 9.76E-07 6.010367023 0.096241044 GFGS(ph)VEELCTNSSLGMEK ddPTM_HeLa_A486_30min_R1 1 GFGSVEELCTNSSLGMEK 18 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 GFGS(1)VEELCTNSSLGMEK 263.08 5.65E-58 124170000 98920 125020 84116 46903 131070 116700 140810 134830 94899 130860 TRUE FALSE FALSE 91986.21882 115112.9599 116687.9679 109192.5543 114629.9784 102302.7405 105577.8487 104132.1523 103124.9217 98091.80424 0.937756416 1.173522709 1.189579178 1.113166948 1.16859894 1.042928523 1.076316717 1.061578519 1.051310275 1 16.58184498 -6.281194047 24.24043928 1.052143575 1.123563413 0.201700161 0.068551049 919.2141351 1127938.968 0.023973016 0.021171356 5.23E-07 6.281194047 0.071419838 GFGSSAPEGLEPDSMAS(ph)AASALHLLSPRPR ddPTM_HeLa_A485_30min_R1 1 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDS(0.006)MAS(0.331)AAS(0.331)ALHLLS(0.331)PRPR 86.732 0.00051501 132960000 36561 48872 59864 40514 57706 36838 45112 33886 40237 57538 TRUE FALSE FALSE 44693.86832 54587.15527 82010.18475 42727.17723 51960.58802 38766.78072 35473.45267 25575.40537 48312.19682 43194.83551 1.034703982 1.263742636 1.898610882 0.989173283 1.202935198 0.897486476 0.821242916 0.592094056 1.118471601 1 15.39857121 -5.961729211 1.584919834 0.851642447 1.361162581 0.369007306 0.260501429 0.383628913 1.973078632 0.102945439 0.117933949 1.09E-06 5.961729211 0.509520135 GFGSSAPEGLEPDSMAS(ph)AASALHLLSPRPR ddPTM_HeLa_A486_30min_R1 2 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDS(0.017)MAS(0.328)AAS(0.328)ALHLLS(0.328)PRPR;GFGSSAPEGLEPDS(0.008)MAS(0.331)AAS(0.331)ALHLLS(0.331)PRPR ; 118.57 2.86E-05 402450000 162958 263840 274390 38462 290230 233450 215030 216890 214840 171463 TRUE FALSE FALSE 151535.4857 242932.3575 380641.1564 89541.47976 253826.6471 204649.3125 161227.2196 167508.8817 233462.5042 128527.5488 1.179011715 1.890118966 2.961553068 0.696671497 1.974881257 1.592260294 1.254417603 1.303291654 1.816439405 1 16.9717181 -5.276860304 24.99851406 1.41828073 1.998217183 0.225840678 0.533399963 1273.835278 2064982.913 0.148932146 0.221792838 5.29E-06 5.276860304 0.579936453 GFGSSAPEGLEPDSMAS(ph)AASALHLLSPRPRPGPELGPQLGLDGGPGDGDR ddPTM_HeLa_A486_30min_R1 1 GFGSSAPEGLEPDSMASAASALHLLSPRPRPGPELGPQLGLDGGPGDGDR 50 2 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDS(0.086)MAS(0.305)AAS(0.305)ALHLLS(0.305)PRPRPGPELGPQLGLDGGPGDGDR 102.42 5.56E-07 87037000 7126.2 8490.2 11953 1222.6 15310 8020 10747 10379 9238.7 6026.3 TRUE FALSE FALSE 6626.69018 7817.405631 16581.52171 2846.274587 13389.67704 7030.573941 8057.98693 8015.928272 10039.51795 4517.275255 1.466966214 1.730557734 3.670691019 0.630086596 2.96410475 1.556374926 1.78381579 1.774505165 2.222472041 1 12.14123711 -10.99982411 0.379499273 3.52E-17 2.026674545 0.117097264 0.794743536 92.50286068 5.437586524 82.38771934 0.526146071 1.00E-11 10.99982411 2.026674545 GFGSSAPEGLEPDSMASAAS(ph)ALHLLSPRPR ddPTM_HeLa_A485_30min_R1 1 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDS(0.018)MAS(0.116)AAS(0.433)ALHLLS(0.433)PRPR 80.02 0.0010013 174810000 64627 86285 113830 61243 116670 71745 89142 60053 82415 103880 TRUE FALSE FALSE 79003.05319 96375.28017 155940.4539 64588.55001 105053.9251 75501.45726 70096.08348 45324.90759 98954.93454 77984.62777 1.01305931 1.235824071 1.999630675 0.828221559 1.347110683 0.968158205 0.898844881 0.581203102 1.268903082 1 16.25090215 -6.103365612 1.396076333 0.901989276 1.342352705 0.204794857 0.32567621 0.608670414 2.415535042 0.141290563 0.145438322 7.88E-07 6.103365612 0.440363428 GFGSSAPEGLEPDSMASAASALHLLS(ph)PR ddPTM_HeLa_A485_30min_R1 6 GFGSSAPEGLEPDSMASAASALHLLSPR 28 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR ;;;;; 227.49 9.43E-39 695203000 547459 854890 873027 456498 760018 590704 621719 504203 595947 669097 TRUE FALSE FALSE 669239.3658 954861.9489 1195996.017 481435.3298 684347.9393 621632.348 488883.6567 380546.4237 715548.0966 502303.4317 1.332340819 1.900966405 2.381022986 0.958455187 1.362419399 1.23756341 0.973283529 0.757602675 1.424533562 1 18.93819961 -5.279187346 24.92347309 1.103018398 1.874395736 0.578036455 0.301267105 538.4963319 756209.3119 0.086129839 0.128060559 5.26E-06 5.279187346 0.771377337 GFGSSAPEGLEPDSMASAASALHLLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 GFGSSAPEGLEPDSMASAASALHLLSPR 28 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAAS(0.002)ALHLLS(0.997)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR;GFGSSAPEGLEPDSMASAASALHLLS(1)PR ;;; 280.94 2.24E-77 648249000 667318 825599 867440 81182.5 819246 616097 679147 591937 746315 584240 TRUE FALSE FALSE 620542.4542 760175.5285 1203335.999 188996.9627 716488.5275 540089.2162 509217.2373 457165.867 811006.1851 437942.5012 1.416949605 1.735788434 2.74770317 0.431556568 1.636033327 1.233242297 1.162749073 1.043894725 1.851855398 1 18.74038194 -5.262431096 24.999995 1.214746422 1.943711162 0.357757671 0.473523223 101.7428153 2564839.208 0.128045679 0.202899751 5.46E-06 5.262431096 0.72896474 GFIYVHKPPVHIR ddPTM_HeLa_A485_30min_R1 2 GFIYVHKPPVHIR 13 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 ; ; 130.56 9.05E-05 87183000 77764 104243 105939 83236 113188 93599 120025 125880 86984 111419 FALSE FALSE TRUE 95062.33352 116433.3121 145130.2446 87782.97192 101918.6053 98499.69891 94380.67824 95007.73263 104440.8909 83644.29381 1.136507097 1.39200544 1.735088408 1.049479503 1.218476487 1.177602134 1.128357643 1.135854322 1.248631391 1 16.3519795 -5.300404678 24.99997066 1.147312278 1.418281313 0.425103309 0.151150296 512.8328765 329030.2758 0.042512056 0.063056819 5.01E-06 5.300404678 0.270969035 GFIYVHKPPVHIR ddPTM_HeLa_A486_30min_R1 2 GFIYVHKPPVHIR 13 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 ; ; 140.39 3.32E-05 73136000 100803 93182 90481 32868 110616 86616 116179 99828 84154 109223 FALSE FALSE TRUE 93737.23025 85797.91896 125517.6664 76518.36506 96741.50983 75930.19857 87109.78538 77099.34363 91448.53648 81872.84988 1.144912268 1.047941034 1.53308046 0.934599995 1.181606723 0.927416093 1.063964251 0.941696102 1.116958022 1 16.32109749 GFKDQIYDIFQK ddPTM_HeLa_A485_30min_R1 2 GFKDQIYDIFQK 12 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;J3KTN0 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 ; ; 126.63 4.99E-05 67512000 194485 229257 184079 185385 275401 261982 319926 352159 201997 285841 FALSE FALSE TRUE 237747.5173 256066.6119 252177.4823 195512.1131 247981.1094 275698.9724 251571.1965 265791.4531 242535.9451 214586.0992 1.107935314 1.193304752 1.175180886 0.911112667 1.155625226 1.284794185 1.172355514 1.238623816 1.13025003 1 17.7111971 -5.988848337 24.99890516 1.184970549 1.099864046 0.080425045 0.100153397 459.1200246 1029212.585 0.031028871 0.035152755 1.03E-06 5.988848337 -0.085106503 GFKDQIYDIFQK ddPTM_HeLa_A486_30min_R1 1 GFKDQIYDIFQK 12 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;J3KTN0 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 131.26 3.44E-05 72170000 178780 162830 117530 78154 214470 156410 201680 215190 142640 217720 FALSE FALSE TRUE 166248.4452 149926.7578 163040.7636 181946.4617 187569.1727 137113.7245 151217.5308 166195.9346 155004.15 163201.4949 1.018669868 0.918660444 0.999015136 1.114857813 1.149310384 0.84014993 0.92656952 1.018348114 0.949771631 1 17.31629475 -6.264352751 24.99968279 0.946839708 1.035226349 0.284375775 0.073668841 412.261093 3537601.701 0.028008666 0.025826329 5.44E-07 6.264352751 0.08838664 GFLKGIEY(ph)ADS(ph)FT(ph)FNPSK ddPTM_HeLa_A486_30min_R1 1 GFLKGIEYADSFTFNPSK 18 1 P19113-2;P19113 P19113-2 HDC Histidine decarboxylase 3 0 GFLKGIEY(1)ADS(1)FT(1)FNPSK 76.027 0.0019727 222170000 132420 106420 50742 138490 100860 202250 250760 259050 92541 358090 TRUE FALSE FALSE 123138.0418 97986.89163 70390.66132 322411.7189 88209.19832 177298.4513 188017.1957 200069.97 100562.5284 268421.9332 0.458748063 0.365048007 0.262238858 1.201137757 0.328621425 0.660521475 0.700453921 0.745356267 0.374643485 1 18.03414304 -14 0.061165219 2.35063015 8.27E-12 0.199157245 0.263802488 668.0780849 2.973921398 138.2595659 22.2307025 1.00E-14 14 -2.35063015 GFLS(ph)PGSR ddPTM_HeLa_A486_30min_R1 1 GFLSPGSR 8 0 Q5UIP0;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 GFLS(0.997)PGS(0.003)R 72.325 0.015032 80866000 178510 192560 158460 57498 188040 156360 181060 185780 157410 179730 TRUE FALSE FALSE 165997.3708 177300.8443 219819.9557 133858.2498 164454.2698 137069.893 135756.8729 143481.9495 171054.4255 134724.4382 1.232125167 1.316025858 1.631626442 0.993570666 1.220671409 1.017409275 1.007663307 1.065003139 1.26966145 1 17.03965204 -5.281235687 24.99447198 1.084695196 1.38553586 0.547512354 0.129597533 602.2043999 760331.4235 0.036402456 0.054077966 5.23E-06 5.281235687 0.300840664 GFLS(ph)SGGSPLRPANASLEEMASLEEEACSLK ddPTM_HeLa_A486_30min_R1 1 GFLSSGGSPLRPANASLEEMASLEEEACSLK 31 1 Q93075;H7C1W4;H7C1D0 Q93075 TATDN2 Putative deoxyribonuclease TATDN2 1 0 GFLS(0.356)S(0.322)GGS(0.322)PLRPANASLEEMASLEEEACSLK 91.532 0.00013853 56268000 26407 28113 23037 12879 29032 28286 26847 35176 25897 32422 TRUE FALSE FALSE 24556.00567 25885.22349 31957.54335 29982.96287 25390.53585 24796.36091 20129.59664 27167.19269 28141.77281 24303.32017 1.01039716 1.065090009 1.314945577 1.233698222 1.044735274 1.020286971 0.828265295 1.117838736 1.157939434 1 14.5688658 -5.891295829 6.699166259 1.021387589 1.160373905 0.237115326 0.112524011 0.338163811 18.83922252 0.038091864 0.043336884 1.28E-06 5.891295829 0.138986316 GFNGCDS(ph)PEPDGEDSLEQSPLLEDKYR ddPTM_HeLa_A486_30min_R1 1 GFNGCDSPEPDGEDSLEQSPLLEDKYR 27 1 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 GFNGCDS(1)PEPDGEDSLEQSPLLEDKYR 158.13 3.45E-10 116250000 155370 246490 161000 87332 251370 217230 260930 242180 179090 203160 TRUE FALSE FALSE 144479.3653 226957.2347 223343.5117 203313.3095 219840.8307 190430.3712 195642.5542 187040.9008 194613.6654 152287.4137 0.94872821 1.490321684 1.46659206 1.335063119 1.443591597 1.250466908 1.284692868 1.228209845 1.277936638 1 17.21643718 -8.542348851 0.567852871 0.98923247 1.343024118 0.282585906 0.14670869 2.377311342 1.324659399 0.211944212 0.065583244 2.87E-09 8.542348851 0.353791647 GFNNIS(ph)ELLPR ddPTM_HeLa_A485_30min_R1 2 GFNNISELLPR 11 0 O94933 O94933 SLITRK3 SLIT and NTRK-like protein 3 1 0 GFNNIS(1)ELLPR;GFNNIS(1)ELLPR ; 72.2 0.012184 231770000 381050 246630 398160 653000 704540 311070 476370 378280 461860 866420 TRUE FALSE FALSE 465813.2579 275471.2331 545455.9528 688671.7365 634393.5238 327357.1442 374589.6579 285506.2369 554551.0656 650437.4393 0.716153822 0.423516877 0.838598641 1.058782436 0.975333653 0.503287671 0.575904207 0.438944962 0.852581712 1 19.31105078 -6.272030593 24.61500231 0.632937817 0.797669686 0.062475801 0.221071943 1446.075533 3360809.064 0.081871214 0.072977881 5.35E-07 6.272030593 0.16473187 GFNNIS(ph)ELLPR ddPTM_HeLa_A486_30min_R1 3 GFNNISELLPR 11 0 O94933 O94933 SLITRK3 SLIT and NTRK-like protein 3 1 0 GFNNIS(1)ELLPR;GFNNIS(1)ELLPR;GFNNIS(1)ELLPR ;; 74.841 0.010486 457730000 448130 1020040 874510 394480 1300270 1040830 1273700 1261930 820710 703150 TRUE FALSE FALSE 416718.4011 939208.3155 1213143.692 918369.3759 1137178.012 912422.977 955006.7882 974616.0867 891849.8036 527076.6633 0.790621991 1.781919749 2.301645618 1.742382921 2.157519183 1.731101072 1.811893515 1.849097398 1.692068471 1 19.00765329 -8.209854269 3.817658583 1.000017017 1.800099838 0.269898107 0.375432635 2.546030589 44.88416952 0.361186812 0.095011076 6.17E-09 8.209854269 0.800082821 GFNS(ph)RS(ph)NLRSHMR ddPTM_HeLa_A485_30min_R1 1 GFNSRSNLRSHMR 13 2 Q9H4Q4 Q9H4Q4 PRDM12 PR domain zinc finger protein 12 2 0 GFNS(0.998)RS(0.998)NLRS(0.004)HMR 54.007 0.0061389 0 23323 23825 31237 39050 43251 28347 43804 38397 30247 43758 TRUE FALSE FALSE 28511.12089 26611.1265 42792.86618 41183.20262 38944.77858 29831.20509 34444.91755 28980.07555 36317.29546 32849.93591 0.867920137 0.810081535 1.302677311 1.253676803 1.185535908 0.908105427 1.04855357 0.882195802 1.105551486 1 15.00360294 -6.267480335 24.94635688 0.985248019 1.090339485 0.083843359 0.15624102 1380.213532 5699619.37 0.059917892 0.054193886 5.40E-07 6.267480335 0.105091466 GFNS(ph)RS(ph)NLRSHMR ddPTM_HeLa_A486_30min_R1 1 GFNSRSNLRSHMR 13 2 Q9H4Q4 Q9H4Q4 PRDM12 PR domain zinc finger protein 12 2 0 GFNS(0.985)RS(0.99)NLRS(0.025)HMR 62.528 0.012419 452060000 23271 26978 22432 13567 31175 37251 37356 36309 20697 37282 TRUE FALSE FALSE 21639.82307 24840.16503 31118.27115 31584.66164 27264.7408 32655.35036 28009.13369 28042.23332 22491.03262 27946.34453 0.774334656 0.888852028 1.113500591 1.130189374 0.975610272 1.168501674 1.002246775 1.003431175 0.804793364 1 14.77037197 -4.55467557 4.647250235 1.030851977 0.795936445 0.411424904 0.096525708 0.167112242 8.520206122 0.025438553 0.079867118 2.79E-05 4.55467557 -0.234915532 GFPALSQKNS(ph)PFKR ddPTM_HeLa_A485_30min_R1 2 GFPALSQKNSPFKR 14 2 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 GFPALS(0.023)QKNS(0.977)PFKR;GFPALS(0.013)QKNS(0.987)PFKR ; 69.522 0.0048013 533100000 434560 429410 287760 523610 616460 651780 848480 1038890 393550 692710 TRUE FALSE FALSE 531226.3728 479625.7641 394214.3987 552213.4884 555083.0779 685906.193 667195.3166 784100.5986 472531.8751 520030.1454 1.021529958 0.922303771 0.758060667 1.061887457 1.067405578 1.318973908 1.282993539 1.507798357 0.908662468 1 18.98823573 -5.812348329 2.039517656 1.236711584 0.908807632 0.335063037 0.172837026 0.314981264 2.693956027 0.058320729 0.072882833 1.54E-06 5.812348329 -0.327903952 GFPALSQKNS(ph)PFKR ddPTM_HeLa_A486_30min_R1 2 GFPALSQKNSPFKR 14 2 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 GFPALS(0.006)QKNS(0.994)PFKR;GFPALS(0.002)QKNS(0.998)PFKR ; 104.44 0.00017237 451980000 650400 454220 310350 402690 642030 569110 858750 820940 373320 920500 TRUE FALSE FALSE 604810.3187 418225.953 430525.8315 937482.6708 561500.6107 498898.9945 643881.6671 634029.883 405679.6782 690000.8086 0.876535667 0.606123859 0.623949749 1.358668945 0.813768047 0.723041174 0.933160743 0.918882812 0.587940874 1 19.39623853 GFQFVSS(ph)SLPDICYR ddPTM_HeLa_A485_30min_R1 3 GFQFVSSSLPDICYR 15 0 P62633-2;P62633-8;P62633-5;P62633;P62633-4;P62633-6 P62633-2 CNBP Cellular nucleic acid-binding protein 1 0 GFQFVS(0.007)S(0.499)S(0.494)LPDICYR;GFQFVS(0.001)S(0.688)S(0.312)LPDICYR;GFQFVS(0.001)S(0.499)S(0.499)LPDICYR ;; 221.31 1.38E-33 274630000 291582 371570 411400 263273 365658 358681 371300 389059 299507 352926 TRUE FALSE FALSE 356443.41 415021.8793 563593.9798 277654.9373 329251.8056 377460.9825 291968.7218 293641.6702 359615.3077 264948.0433 1.345333242 1.566427417 2.127186798 1.047959947 1.242703292 1.424660389 1.10198482 1.108299071 1.357305014 1 18.01534995 -5.288823877 24.99976863 1.196932698 1.66832715 0.516496942 0.219722902 590.0848544 538697.0523 0.062167432 0.092232592 5.14E-06 5.288823877 0.471394452 GFQFVSS(ph)SLPDICYR ddPTM_HeLa_A486_30min_R1 3 GFQFVSSSLPDICYR 15 0 P62633-2;P62633-8;P62633-5;P62633;P62633-4;P62633-6 P62633-2 CNBP Cellular nucleic acid-binding protein 1 0 GFQFVS(0.08)S(0.46)S(0.46)LPDICYR;GFQFVSS(0.5)S(0.5)LPDICYR;GFQFVS(0.001)S(0.883)S(0.117)LPDICYR ;; 283.31 1.41E-58 329586000 304524 350795 287386 109995.7 340727 301050 337352 329950 316391 361657 TRUE FALSE FALSE 283178.4402 322996.7266 398669.5557 256075.5485 297989.8425 263909.5119 252942.9615 254827.5878 343816.0266 271095.7332 1.04456989 1.19144895 1.470585874 0.944594537 1.099205211 0.973491942 0.933039257 0.939991142 1.268245806 1 18.04844288 -5.297721441 24.99994282 1.017559623 1.23112657 0.340380963 0.135632914 635.8434975 438122.8502 0.038248989 0.056733962 5.04E-06 5.297721441 0.213566947 GFQFVSSS(ph)LPDICYR ddPTM_HeLa_A485_30min_R1 1 GFQFVSSSLPDICYR 15 0 P62633-2;P62633-8;P62633-5;P62633;P62633-4;P62633-6 P62633-2 CNBP Cellular nucleic acid-binding protein 1 0 GFQFVS(0.09)S(0.189)S(0.721)LPDICYR 106.82 0.00028973 141550000 57510 73943 82345 42387 77140 69944 73952 74398 64523 72809 TRUE FALSE FALSE 70302.90109 82589.99063 112807.8422 44702.49448 69459.67075 73606.15969 58151.55107 56151.77385 77472.17426 54659.05625 1.286207738 1.511002866 2.063845406 0.817842413 1.270780645 1.346641613 1.063895996 1.027309612 1.417371239 1 15.73817293 -5.271072473 24.97403796 1.147506364 1.609417107 0.451239598 0.24499139 617.6983312 1601397.43 0.068706229 0.103391098 5.36E-06 5.271072473 0.461910743 GFS(ph)FVATGLMEDDGKPR ddPTM_HeLa_A485_30min_R1 2 GFSFVATGLMEDDGKPR 17 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 0 GFS(1)FVATGLMEDDGKPR;GFS(1)FVATGLMEDDGKPR ; 164.02 3.38E-12 128018000 84779 69214 72132 78481 104893 65406 99911 99506 52967 79376 TRUE FALSE FALSE 103637.7961 77307.97522 98816.62846 82768.21831 94449.48462 68830.55702 78564.19865 75101.99748 63596.99106 59589.02401 1.73920949 1.2973526 1.658302516 1.388984292 1.585014794 1.15508784 1.318434057 1.260332733 1.067260156 1 15.862759 -6.823404081 0.419612872 0.983500889 1.606034344 0.652406613 0.138948276 0.712408427 0.295436564 0.142868231 0.15167592 1.50E-07 6.823404081 0.622533455 GFS(ph)FVATGLMEDDGKPR ddPTM_HeLa_A486_30min_R1 2 GFSFVATGLMEDDGKPR 17 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 0 GFS(1)FVATGLMEDDGKPR;GFS(1)FVATGLMEDDGKPR ; 160.13 4.30E-12 96352000 62256 74858 53103 50501 71042 81698 93230 108524 63738 72003 TRUE FALSE FALSE 57892.17589 68925.97945 73665.90375 117568.8802 62131.24992 71618.9314 69902.86791 83815.45426 69262.86116 53972.98014 1.072614033 1.27704602 1.364866338 2.178291432 1.151154703 1.326940466 1.295145603 1.552915071 1.283287693 1 15.71994973 GFS(ph)LEELR ddPTM_HeLa_A486_30min_R1 1 GFSLEELR 8 0 P26373;J3QSB4;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 0 GFS(1)LEELR 118.71 0.0008333 6720200 39563 34853 30910 21979 42301 35291 41526 44583 34899 48866 TRUE FALSE FALSE 36789.838 32091.12135 42879.1798 51168.22276 36995.21414 30937.15523 31135.75558 34432.42414 37924.07342 36629.63554 1.004373575 0.876097206 1.170614427 1.396907777 1.009980405 0.844593586 0.850015435 0.940015472 1.035338541 1 15.16072373 -5.996714326 24.99301589 0.925249645 1.11234866 0.27796478 0.134882525 140.7152437 1070356.254 0.046238118 0.052168392 1.01E-06 5.996714326 0.187099015 GFS(ph)TWLK ddPTM_HeLa_A486_30min_R1 1 GFSTWLK 7 0 P26038;V9GZ54 P26038 MSN Moesin 1 0 GFS(0.99)T(0.01)WLK 83.265 0.0099752 19087000 32567 34810 26614 19705 41786 37575 37533 34424 36409 43071 TRUE FALSE FALSE 30284.22148 32051.52882 36919.65355 45874.23584 36544.81024 32939.37853 28141.84642 26586.40667 39564.96144 32285.74125 0.938006076 0.992745639 1.143528137 1.420882224 1.131917956 1.020245386 0.871649382 0.823472085 1.225462384 1 14.97860953 -6.380277903 4.027451186 0.963821612 1.135023398 0.162100569 0.154712828 0.416463365 11.62212705 0.060859548 0.053002602 4.17E-07 6.380277903 0.171201786 GFSFVAITS(ph)DDESQAMQTVGVHSIVQQLHR ddPTM_HeLa_A485_30min_R1 1 GFSFVAITSDDESQAMQTVGVHSIVQQLHR 30 0 B1AXG1;B7ZB17;P51812 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 GFSFVAIT(0.24)S(0.76)DDESQAMQTVGVHSIVQQLHR 128.42 2.18E-06 120720000 73334 100430 103250 83091 97329 97043 119510 131100 89995 127960 TRUE FALSE FALSE 89646.8953 112174.4149 141446.4716 87630.05093 87638.58302 102124.0214 93975.71219 98947.51944 108056.171 96061.92693 0.933219832 1.167730218 1.472450909 0.91222458 0.912313398 1.06310611 0.978282606 1.030038878 1.124859499 1 16.55167713 GFSLEELR ddPTM_HeLa_A485_30min_R1 2 GFSLEELR 8 0 P26373;J3QSB4;P26373-2 P26373 RPL13 60S ribosomal protein L13 0 0 ; ; 142.64 0.016897 83350000 196617 237620 226048 299670 268850 227500 299910 311600 214823 372600 FALSE FALSE TRUE 240353.7733 265407.592 309672.5618 316040.2133 242082.35 239411.5482 235831.7785 235179.6114 257936.0056 279717.6772 0.859272734 0.948840969 1.107089709 1.129854275 0.865452453 0.855904248 0.843106452 0.840774933 0.9221298 1 18.0936119 -5.796670338 24.99865398 0.87609437 1.013650344 0.335668703 0.084021081 196.991321 139777.1255 0.027593372 0.03128917 1.60E-06 5.796670338 0.137555974 GFSLEELR ddPTM_HeLa_A486_30min_R1 1 GFSLEELR 8 0 P26373;J3QSB4;P26373-2 P26373 RPL13 60S ribosomal protein L13 0 0 147.52 0.012665 48511000 71427 79745 61986 51234 100550 79444 98260 93909 65850 118410 FALSE FALSE TRUE 66420.33615 73425.71577 85988.63924 119275.3412 87938.08141 69643.00701 73674.30871 72527.97072 71557.93102 88759.36528 0.748319188 0.827244714 0.968783846 1.343805703 0.990747074 0.784627141 0.830045466 0.817130344 0.806201473 1 16.43761173 -6.249483372 23.28984015 0.83507432 0.98758535 0.14103544 0.155286887 585.0203922 1139595.969 0.056285748 0.055784377 5.63E-07 6.249483372 0.15251103 GFSNS(ph)TEHKR ddPTM_HeLa_A486_30min_R1 3 GFSNSTEHKR 10 1 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GFS(0.027)NS(0.955)T(0.018)EHKR;GFS(0.03)NS(0.952)T(0.018)EHKR;GFS(0.001)NS(0.971)T(0.028)EHKR ;; 85.457 0.0024512 288479000 279878 282668 211461.5 93818 337258 299345 367141 361904 243002 365649 TRUE FALSE FALSE 260259.9975 260268.3582 293345.0559 218413.0453 294955.9568 262414.8574 275278.4386 279506.3595 264065.609 274088.1104 0.949548658 0.949579162 1.07025823 0.796871652 1.07613554 0.957410582 1.004342867 1.019768275 0.963433286 1 18.06428022 GFSQYGVSGS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 GFSQYGVSGSPTK 13 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 1 0 GFSQYGVSGS(1)PTK;GFSQYGVS(0.006)GS(0.994)PTK ; 247.5 2.50E-35 1641700000 2040780 2104120 1733100 2514000 2598300 2451570 3133700 3333100 1852400 3416400 TRUE FALSE FALSE 2494744.47 2350178.531 2374245.81 2651333.454 2339604.129 2579930.414 2464159.395 2515651.999 2224159.689 2564754.354 0.972703084 0.916336696 0.92572055 1.033757268 0.912213727 1.005917159 0.960777936 0.980854948 0.867201838 1 21.29038922 -9.729173421 5.822045468 1.000000002 0.954765527 0.083202008 0.046575947 1.05E-09 2.75E-10 0.043036367 0.010437852 1.87E-10 9.729173421 -0.045234475 GFSQYGVSGS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 GFSQYGVSGSPTK 13 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 1 0 GFSQYGVSGS(0.999)PT(0.001)K;GFSQYGVSGS(1)PTK ; 276.14 1.42E-48 2507000000 4579200 4715100 2849380 1835920 4564000 4982000 5882300 5826300 3510300 6646400 TRUE FALSE FALSE 4258221.727 4341458.304 3952736.245 4274114.542 3991540.562 4367371.493 4410486.323 4499778.677 3814575.63 4982098.179 0.854704499 0.871411632 0.793387866 0.857894483 0.801176617 0.876612892 0.885266842 0.903189483 0.765656455 1 22.24832202 -6.409618388 9.025909416 0.880521493 0.836614899 0.157898887 0.057551193 0.742079909 54.37559513 0.019293299 0.016995838 3.89E-07 6.409618388 -0.043906594 GFSVVADT(ph)PELQR ddPTM_HeLa_A485_30min_R1 6 GFSVVADTPELQR 13 0 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR ;;;;; 353.96 4.38E-94 18986060000 6431050 8651390 9550490 6060330 11606460 8128300 8802370 9567250 7640850 8256180 TRUE FALSE FALSE 7861614.886 9663094.803 13083613.68 6391390.482 10450880.09 8553885.219 6921671.741 7220866.937 9174298.509 6198066.27 1.268398004 1.559049933 2.11091865 1.031191053 1.686151718 1.380089345 1.116746972 1.165019318 1.480187224 1 22.56338675 -6.535401908 5.382159625 1.20727018 1.537625886 0.240762097 0.284237821 0.266172062 24.25632997 0.107165805 0.085474945 2.91E-07 6.535401908 0.330355706 GFSVVADT(ph)PELQR ddPTM_HeLa_A486_30min_R1 6 GFSVVADTPELQR 13 0 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR;GFSVVADT(1)PELQR ;;;;; 288.45 5.22E-49 21270340000 11459480 13230550 12818910 3983500 16640200 11685440 13181030 13579000 10331250 12162830 TRUE FALSE FALSE 10656229.63 12182113.03 17782735.25 9273789.315 14553030.95 10243809.22 9882996.879 10487358.13 11226771.07 9117178.201 1.168807869 1.33617143 1.950464811 1.017177586 1.596220961 1.123572337 1.083997336 1.150285527 1.2313866 1 23.12015594 -6.287670279 23.33675739 1.125125399 1.417241195 0.275805767 0.23957844 461.1278718 410247.7929 0.082894963 0.073139851 5.16E-07 6.287670279 0.292115796 GFSVVADTPELQR ddPTM_HeLa_A485_30min_R1 1 GFSVVADTPELQR 13 0 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 0 0 157.68 4.85E-06 30178000 15194 20182 20761 15474 23455 18109 22696 22662 17598 22781 FALSE FALSE TRUE 18573.85288 22542.10934 28441.35784 16319.30544 21119.73784 19057.15924 17846.81419 17104.10897 21129.75718 17102.11595 1.086055838 1.318088908 1.663031517 0.954227271 1.23491958 1.114315871 1.043544216 1.000116536 1.235505433 1 14.06188721 -5.289620147 24.99810798 1.089199293 1.35196195 0.38550912 0.157506396 741.8139438 658033.852 0.044321528 0.065752317 5.13E-06 5.289620147 0.262762657 GFTECEMTKS(ph)SPLK ddPTM_HeLa_A485_30min_R1 2 GFTECEMTKSSPLK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GFTECEMTKS(0.5)S(0.5)PLK;GFTECEMTKS(0.5)S(0.5)PLK ; 233.48 1.78E-29 3187600000 2999700 2190460 1508780 4854800 4031100 2999500 5673000 4659200 2723900 7222400 TRUE FALSE FALSE 3666972.916 2446615.243 2066940.508 5120005.431 3629749.53 3156549.182 4460917.206 3516523.895 3270561.745 5421988.598 0.676315129 0.451239467 0.38121447 0.944303983 0.669449864 0.582175548 0.82274559 0.648567187 0.603203361 1 22.37039065 -14 0.124996161 2.119004594 0.488391615 0.337936371 0.152392516 182.2424884 1.455023413 51.8944395 1.358105473 1.00E-14 14 -1.630612979 GFTECEMTKS(ph)SPLK ddPTM_HeLa_A486_30min_R1 1 GFTECEMTKSSPLK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GFTECEMT(0.043)KS(0.478)S(0.478)PLK 153.75 1.77E-08 1219600000 1614800 1601100 793160 1318100 1707900 2289400 3511600 3174300 1162400 2948500 TRUE FALSE FALSE 1501610.859 1474223.005 1100292.794 3068603.413 1493679.256 2006957.105 2632960.538 2451581.184 1263157.768 2210176.408 0.679407695 0.66701599 0.497830304 1.388397506 0.675819021 0.908052903 1.191289767 1.109224212 0.571518981 1 21.07573009 -5.221595753 24.99810636 0.975720827 0.619977739 0.349982883 0.226660227 600.9716836 377052.1211 0.060218216 0.10429909 6.00E-06 5.221595753 -0.355743087 GFTECEMTKSS(ph)PLK ddPTM_HeLa_A486_30min_R1 1 GFTECEMTKSSPLK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GFTECEMT(0.005)KS(0.213)S(0.782)PLK 163.18 3.48E-12 1315500000 2127900 1878900 1083000 1578300 2120500 2759700 3881400 3954300 1495000 3553900 TRUE FALSE FALSE 1978745.198 1730009.121 1502366.604 3674362.163 1854527.117 2419236.273 2910232.667 3053992.212 1624587.804 2663980.308 0.742777712 0.649407624 0.563955597 1.379275272 0.696148959 0.908128437 1.092437755 1.146401947 0.609834764 1 21.34515199 -5.171267248 24.99988696 0.972560131 0.651781527 0.334241572 0.209496617 76.06633592 21086.36888 0.054958338 0.095190642 6.74E-06 5.171267248 -0.320778604 GFVFITFK ddPTM_HeLa_A485_30min_R1 2 GFVFITFK 8 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 197.65 1.27E-09 399230000 1051950 1301520 1029790 1007830 977980 969610 1203350 1130930 656520 1263620 FALSE FALSE TRUE 1285952.648 1453721.442 1410752.174 1062885.201 880608.8773 1020377.28 946244.442 853567.6443 788277.542 948622.7892 1.355599573 1.53245469 1.487158215 1.12045084 0.928302469 1.075640699 0.997492842 0.899796688 0.830970488 1 19.855475 -5.405041753 3.050501345 0.959958167 1.468535795 0.897732083 0.075711081 0.078782522 1.393947835 0.023879789 0.037364813 3.94E-06 5.405041753 0.508577628 GFVFITFK ddPTM_HeLa_A486_30min_R1 2 GFVFITFK 8 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 204.19 6.84E-10 329700000 901510 986380 672970 338310 772360 851940 999880 830390 792970 1145560 FALSE FALSE TRUE 838318.8044 908215.6565 933562.0068 787602.7772 675483.4068 746836.3047 749699.4483 641328.3243 861705.2781 858704.3197 0.976260146 1.05765819 1.087175161 0.91719904 0.786630964 0.869724639 0.8730589 0.746855826 1.003494752 1 19.71180192 -5.421388186 4.790415831 0.865258717 1.040514856 0.437523888 0.080267659 0.181584019 6.651302485 0.021904487 0.03275622 3.79E-06 5.421388186 0.175256139 GFVFITFKEEEPVKK ddPTM_HeLa_A485_30min_R1 2 GFVFITFKEEEPVKK 15 2 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 119.96 5.63E-05 23530000 20715.3 20254.1 15655.9 34614 32957 26769 39566 45455 21091 44647 FALSE FALSE TRUE 25323.34702 22622.64081 21447.66891 36504.87517 29675.68536 28170.58345 31112.40088 34307.08998 25323.77024 33517.32457 0.755530083 0.674953658 0.639897999 1.089134519 0.885383477 0.840478284 0.92824834 1.023562901 0.75554271 1 15.03261937 -5.243414844 24.99154154 0.926863492 0.688609866 0.585712625 0.093061816 574.6039306 796703.982 0.024615312 0.042522058 5.71E-06 5.243414844 -0.238253626 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKS(ph)VSGTDVQEECR ddPTM_HeLa_A485_30min_R1 1 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECR 41 2 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKS(0.488)VS(0.488)GT(0.023)DVQEECR 205.07 7.82E-31 1018900000 112880 68189 60369 213790 111920 90673 183010 135940 86949 262320 TRUE FALSE FALSE 137989.7666 76163.11038 82702.00526 225468.8064 100776.8518 95420.49807 143908.4184 102600.5019 104398.8668 196928.4516 0.700710159 0.386755239 0.419959658 1.144927533 0.511743483 0.484543992 0.730764992 0.521003953 0.530136026 1 17.58731204 -10.45341922 4.893978172 1.000839806 0.602686293 0.245861868 0.208378833 0.001926949 0.000215209 0.203616478 0.049284548 3.52E-11 10.45341922 -0.398153513 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKS(ph)VSGTDVQEECR ddPTM_HeLa_A486_30min_R1 2 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECR 41 2 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKS(0.987)VS(0.011)GT(0.002)DVQEECR;GGAAPEGPNEAEVTSGKPEQEVPDAEEEKS(0.999)VS(0.001)GTDVQEECR ; 262.86 5.17E-66 1997270000 211225 249820 98117 190990 200249 325720 445780 366310 206482 487190 TRUE FALSE FALSE 196419.2183 230023.3534 136110.5301 444634.3721 175131.9032 285535.9781 334241.129 282909.2095 224380.026 365194.4529 0.537848307 0.629865409 0.372707003 1.217527727 0.47955795 0.781873809 0.915241528 0.774681015 0.61441247 1 18.47830533 -5.202635023 24.99990982 0.804221459 0.525112811 0.335830872 0.19966127 326.6956131 138889.5857 0.051777193 0.089680704 6.27E-06 5.202635023 -0.279108648 GGALPPAK(ac)R ddPTM_HeLa_A486_30min_R1 1 GGALPPAKR 9 1 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 GGALPPAK(1)R 105.12 0.017716 24715000 19598 14236 16168 6509.6 15804 12587 15355 16174 12918 15597 FALSE TRUE FALSE 18224.2814 13107.88751 22428.68259 15154.67778 13821.71495 11034.14392 11513.01659 12491.53328 14037.74264 11691.40968 1.558775366 1.121155436 1.91838993 1.296223312 1.182211156 0.943782163 0.984741524 1.068436879 1.200688627 1 13.51316127 -5.713137699 2.827771801 1.046968968 1.50208857 0.534639436 0.195625526 0.207429348 3.38324043 0.061149562 0.078954017 1.94E-06 5.713137699 0.455119602 GGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_HeLa_A486_30min_R1 1 GGAPDPSPGATATPGAPAQPSSPDAR 26 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR 85.573 1.21E-05 0 59282 69321 55574 26721 66141 57205 68998 72437 53474 68670 TRUE FALSE FALSE 55126.63793 63827.7515 77093.74112 62207.8384 57844.97904 50147.62872 51733.97061 55944.67639 58109.16938 51474.58503 1.070948661 1.239985742 1.497704956 1.208515588 1.123758045 0.974221136 1.0050391 1.086840746 1.128890487 1 15.65157267 -5.808402673 2.978865385 1.043720322 1.275763674 0.476017101 0.106265948 0.228789593 4.144733723 0.036264566 0.044000504 1.55E-06 5.808402673 0.232043352 GGAPDPSPGATATPGAPAQPS(ph)SPDARR ddPTM_HeLa_A485_30min_R1 2 GGAPDPSPGATATPGAPAQPSSPDARR 27 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GGAPDPSPGATAT(0.003)PGAPAQPS(0.499)S(0.499)PDARR;GGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR ; 176.9 6.54E-15 1286880000 185067 369202 357410 149707 420610 375787 395730 523010 275779 221352 TRUE FALSE FALSE 226234.5157 412376.9623 489630.8321 157885.1143 378732.5915 395462.6262 311179.0527 394740.9775 331125.3157 166173.0201 1.361439514 2.481612009 2.946512207 0.950124841 2.279146105 2.379824511 1.872620793 2.375481755 1.992653895 1 17.34232664 -8.044577801 21.6175798 0.999999993 2.10057067 0.258779399 0.544798972 2391.277904 1159627.668 0.513836063 0.1326719 9.02E-09 8.044577801 1.100570677 GGAPDPSPGATATPGAPAQPS(ph)SPDARR ddPTM_HeLa_A486_30min_R1 1 GGAPDPSPGATATPGAPAQPSSPDARR 27 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GGAPDPSPGATATPGAPAQPS(0.601)S(0.399)PDARR 169.39 3.87E-14 416090000 115530 136850 136560 37481 198030 104580 141520 150900 125370 132470 TRUE FALSE FALSE 107431.9436 126005.5076 189439.6892 87257.66218 173191.2308 91677.98289 106110.1992 116543.3641 136237.1725 99298.64977 1.081907396 1.268954894 1.907777091 0.878739665 1.744144873 0.923255081 1.068596596 1.173665144 1.37199421 1 16.59948648 -6.29155764 24.97577684 1.115924715 1.37222483 0.169118014 0.297543785 1343.134026 1113798.795 0.101711365 0.089711842 5.11E-07 6.29155764 0.256300115 GGASS(ph)SCCEEEQTQGR ddPTM_HeLa_A485_30min_R1 2 GGASSSCCEEEQTQGR 16 0 Q9UJK0 Q9UJK0 TSR3 Ribosome biogenesis protein TSR3 homolog 1 0 GGAS(0.001)S(0.774)S(0.225)CCEEEQTQGR;GGASS(0.867)S(0.133)CCEEEQTQGR ; 393.42 7.98E-135 515610000 348220 394000 524720 393340 572100 318820 384900 403090 403900 486970 TRUE FALSE FALSE 425680.3377 440074.8727 718835.7634 414827.1682 515139.7152 335512.9222 302662.9707 304231.5455 484959.0252 365577.341 1.164405694 1.203780495 1.966302839 1.134717942 1.409112813 0.91776181 0.827904076 0.832194754 1.326556574 1 18.47981713 -6.259832904 24.83533458 0.960834395 1.385542271 0.371819163 0.255744116 141.7859669 2191952.848 0.087655593 0.083282587 5.50E-07 6.259832904 0.424707876 GGASS(ph)SCCEEEQTQGR ddPTM_HeLa_A486_30min_R1 2 GGASSSCCEEEQTQGR 16 0 Q9UJK0 Q9UJK0 TSR3 Ribosome biogenesis protein TSR3 homolog 1 0 GGAS(0.059)S(0.921)S(0.021)CCEEEQTQGR;GGASS(0.844)S(0.156)CCEEEQTQGR ; 390.77 1.10E-134 949710000 388560 732010 753990 213955 876800 609560 673790 704850 513000 515560 TRUE FALSE FALSE 361323.9505 674002.8617 1045955.121 498098.0527 766823.5682 534358.6848 505200.6154 544371.0418 557467.253 386460.4203 0.934957195 1.744041113 2.706499982 1.288872098 1.984222777 1.382699642 1.307250598 1.408607488 1.442495075 1 18.55996114 -6.380617641 6.34550207 1.327205195 1.760938976 0.183562101 0.444690586 0.443962568 21.42917918 0.159790905 0.140382901 4.16E-07 6.380617641 0.433733781 GGAVERPLT(ph)PAPR ddPTM_HeLa_A485_30min_R1 4 GGAVERPLTPAPR 13 1 H9KVB4;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR ;;; 121.32 8.39E-05 2526870000 1124600 1552650 1529990 1004350 1719810 1504600 1661220 1876710 1461450 1399980 TRUE FALSE FALSE 1374763.39 1734218.911 2095996.969 1059215.097 1548579.678 1583378.529 1306286.776 1416443.93 1754749.61 1050990.751 1.308064214 1.650080089 1.994305818 1.007825327 1.473447484 1.506558006 1.242909869 1.347722546 1.669614703 1 20.00331854 -12.54211804 0.191105298 4.87E-13 1.557176074 0.212990742 0.258767373 118.8201675 1.92259734 48.46909749 0.74410716 2.87E-13 12.54211804 1.557176074 GGAVERPLT(ph)PAPR ddPTM_HeLa_A486_30min_R1 4 GGAVERPLTPAPR 13 1 H9KVB4;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR;GGAVERPLT(1)PAPR ;;; 98.508 0.0011026 2162810000 1155850 1280590 1281450 349326 1545680 1157160 1222460 1257130 1189260 1122471 TRUE FALSE FALSE 1074830.884 1179111.385 1777661.758 813248.582 1351806.402 1014401.364 916587.5781 970908.942 1292346.014 841396.9555 1.277436146 1.401373486 2.112750405 0.966545667 1.606621456 1.205615682 1.08936403 1.153924952 1.535952805 1 19.68242707 -5.919999529 1.295674047 1.205807734 1.523883281 0.154155959 0.30288988 0.832344961 2.922629839 0.126263171 0.154181504 1.20E-06 5.919999529 0.318075547 GGAY(ph)Y(ph)PVTVK ddPTM_HeLa_A485_30min_R1 1 GGAYYPVTVK 10 0 A0A0G2JM88;D6R9R1;D6RDF7;Q9HCC0-2;Q9HCC0 A0A0G2JM88 MCCC2 "Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial" 2 0 GGAY(0.926)Y(0.926)PVT(0.148)VK 40.432 0.011012 0 6171.1 3920.4 6606.1 4693.5 9786.9 6422.7 4937.8 5412.6 5174.1 9330.2 TRUE FALSE FALSE 7543.839905 4378.856677 9049.971293 4949.89402 8812.481872 6758.982641 3882.798692 4085.151363 6212.49441 7004.35285 1.077021685 0.625162206 1.292049599 0.706688273 1.258143623 0.964968897 0.554340819 0.583230378 0.886947666 1 12.77403605 -6.664139332 8.626314143 0.721963218 0.985710538 0.187679361 0.231573501 0.387162957 30.67265666 0.08443862 0.065262464 2.17E-07 6.664139332 0.26374732 GGCGS(ph)PGLQCK ddPTM_HeLa_A485_30min_R1 1 GGCGSPGLQCK 11 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GGCGS(1)PGLQCK 90.434 0.0012766 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GGCGS(ph)PGLQCK ddPTM_HeLa_A486_30min_R1 2 GGCGSPGLQCK 11 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GGCGS(1)PGLQCK;GGCGS(1)PGLQCK ; 160.56 7.62E-08 436060000 687390 839970 537500 321430 813990 755580 867070 857630 592750 856040 TRUE FALSE FALSE 639207.5107 773407.7181 745634.3947 748305.2842 711891.784 662364.2218 650119.9151 662366.3709 644130.0473 641682.0121 0.996143726 1.205281905 1.161999839 1.166162165 1.10941521 1.032231244 1.013149664 1.032234593 1.003815028 1 19.29149902 -6.221815789 2.837938261 1.015593695 1.139749922 0.53899907 0.051861968 0.206958077 3.322057734 0.018615897 0.017755422 6.00E-07 6.221815789 0.124156227 GGCPGGEATLS(ph)QPPPR ddPTM_HeLa_A485_30min_R1 1 GGCPGGEATLSQPPPR 16 0 P20290 P20290 BTF3 Transcription factor BTF3 1 0 GGCPGGEAT(0.025)LS(0.975)QPPPR 145.94 7.40E-08 445350000 106470 102050 101480 127000 143210 128160 190880 162160 98143 181870 TRUE FALSE FALSE 130153.8842 113983.8598 139021.6749 133937.6884 128951.5096 134870.2594 150096.9287 122390.0057 117839.3999 136533.1561 0.953276757 0.834843807 1.01822648 0.980990202 0.94447029 0.987820565 1.099344166 0.896412339 0.863082663 1 17.05889182 -4.768137541 24.99995644 0.974288486 0.894060278 0.185032787 0.066927077 240.3152252 896954.9841 0.018060365 0.039001384 1.71E-05 4.768137541 -0.080228208 GGDAKS(ph)PVLQEK ddPTM_HeLa_A485_30min_R1 3 GGDAKSPVLQEK 12 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 0 GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK ;; 125.98 1.97E-05 1345420000 2673520 2339720 1607290 3857400 3414650 3207680 5083300 5419700 2724340 6309900 TRUE FALSE FALSE 3268235.3 2613329.901 2201893.456 4068119.995 3074675.456 3375629.165 3997211.428 4090510.077 3271090.049 4736958.055 0.689943897 0.551689475 0.464832796 0.85880431 0.649082263 0.71261538 0.84383509 0.86353099 0.690546551 1 22.17552947 -6.42542299 0.138047021 1.141495806 0.319321378 0.509731256 0.106727457 8.524038798 0.586908888 1.140047865 2.057169038 3.75E-07 6.42542299 -0.822174428 GGDAKS(ph)PVLQEK ddPTM_HeLa_A486_30min_R1 4 GGDAKSPVLQEK 12 1 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 0 GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK;GGDAKS(1)PVLQEK ;;; 131.39 1.28E-05 1755350000 2861930 2461730 1285530 1428780 2539670 2966300 3876710 3553160 1978660 4423360 TRUE FALSE FALSE 2661323.486 2266653.549 1783321.644 3326272.047 2221120.907 2600348.065 2906716.154 2744183.033 2150171.842 3315721.865 0.802637735 0.683607866 0.537838129 1.003181866 0.66987552 0.784247947 0.876646556 0.827627631 0.648477746 1 21.66089156 -14 0.180170075 1.936969842 0.714090613 0.236027731 0.125934431 198.924853 1.914994296 67.19582589 0.390260507 1.00E-14 14 -1.222879229 GGDDYS(ph)EDEGDSSVSR ddPTM_HeLa_A485_30min_R1 2 GGDDYSEDEGDSSVSR 16 0 A6NDA1;Q99871-3;Q99871;Q99871-2 A6NDA1 HAUS7 HAUS augmin-like complex subunit 7 1 0 GGDDYS(1)EDEGDSSVSR;GGDDYS(1)EDEGDSSVSR ; 403.27 3.41E-152 1149250000 425070 633060 667440 459210 745560 593980 723490 724590 603890 582440 TRUE FALSE FALSE 519625.355 707090.8601 914353.8305 484295.4795 671329.4286 625079.8743 568910.4511 546883.1664 725085.1838 437248.427 1.188398455 1.617137573 2.091154076 1.107597991 1.535350128 1.429576039 1.301114918 1.25073787 1.65829112 1 18.73809367 -5.297566207 24.9991026 1.348532677 1.630721664 0.207855168 0.271401654 953.043271 659486.4204 0.07533086 0.11173785 5.04E-06 5.297566207 0.282188987 GGDDYS(ph)EDEGDSSVSR ddPTM_HeLa_A486_30min_R1 2 GGDDYSEDEGDSSVSR 16 0 A6NDA1;Q99871-3;Q99871;Q99871-2 A6NDA1 HAUS7 HAUS augmin-like complex subunit 7 1 0 GGDDYS(1)EDEGDSSVSR;GGDDYS(1)EDEGDSSVSR ; 316.8 2.41E-78 1175760000 547010 743810 745920 240520 890020 682940 713530 816010 666630 674090 TRUE FALSE FALSE 508667.4238 684867.7867 1034760.2 559942.7152 778385.3925 598685.8064 534997.247 630222.3364 724414.0251 505293.4764 1.006677203 1.355386164 2.047840015 1.108153462 1.540461987 1.184827896 1.058785185 1.2472402 1.433650065 1 18.94676203 -6.27945361 23.42355256 1.192470909 1.427052002 0.137433423 0.282476414 772.716092 1004742.846 0.100663715 0.089006933 5.25E-07 6.27945361 0.234581093 GGDLMAYDRR ddPTM_HeLa_A485_30min_R1 4 GGDLMAYDRR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 137.98 7.18E-05 1838560000 804810 1333500 1321770 723260 1364460 1252240 1350050 1571730 1064650 975050 FALSE FALSE TRUE 983837.2079 1489441.225 1810747.726 762769.8624 1228609.571 1317805.35 1061600.789 1186260.753 1278315.489 731987.9795 1.344061973 2.034789186 2.473739702 1.042052443 1.678455939 1.800310097 1.450298117 1.620601412 1.746361314 1 19.48146043 -11.51763814 0.212141292 1.05E-14 1.828109355 0.238318154 0.36781501 65.35082949 1.673773923 31.93284625 0.859445064 3.04E-12 11.51763814 1.828109355 GGDLMAYDRR ddPTM_HeLa_A486_30min_R1 4 GGDLMAYDRR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 130.94 0.00018561 1080748000 590604 609089 634007 183247 826346 516571 598233 629453 489056 630029 FALSE FALSE TRUE 549205.7095 560822.5694 879511.4897 426608.2768 722697.9793 452841.7221 448548.7759 486140.2928 531447.7678 472265.6376 1.162916939 1.187515086 1.8623237 0.903322713 1.530278559 0.958870784 0.949780675 1.029378922 1.125315343 1 18.84923904 -6.279603747 24.84559092 1.010574777 1.327346256 0.303949818 0.23953459 974.1994077 1332525.803 0.081939773 0.072409346 5.25E-07 6.279603747 0.316771479 GGDSIGET(ph)PT(ph)PGASK ddPTM_HeLa_A485_30min_R1 3 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 GGDSIGET(1)PT(1)PGASK;GGDSIGET(1)PT(1)PGASK;GGDSIGET(1)PT(1)PGASK ;; 181.51 1.36E-17 1448760000 1831390 1783200 1625370 2300870 2354440 1855890 2393400 2234960 1816030 2939000 TRUE FALSE FALSE 2238776.387 1991729.728 2226662 2426560.702 2120023.687 1953061.531 1882030.538 1686832.556 2180490.563 2206361.388 1.014691609 0.902721439 1.009200946 1.099802016 0.96086874 0.885195662 0.853001937 0.764531398 0.988274439 1 21.07323768 -6.158562774 3.896998115 0.880472613 1.002068195 0.287642514 0.077542869 0.276901023 7.538006276 0.026668839 0.026603872 6.94E-07 6.158562774 0.121595582 GGDSIGET(ph)PT(ph)PGASK ddPTM_HeLa_A486_30min_R1 4 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 GGDSIGET(1)PT(1)PGASK;GGDSIGET(1)PT(1)PGASK;GGDSIGET(1)PT(1)PGASK;GGDSIGET(1)PT(1)PGASK ;;; 329.21 2.89E-102 1132960000 3777080 3973520 2374360 1459030 3620890 4027890 4498040 4317950 3128650 4347840 TRUE FALSE FALSE 3512326.197 3658643.804 3293775.78 3396695.575 3166724.213 3530969.884 3372582.817 3334847.045 3399843.901 3259112.564 1.077694043 1.122588966 1.010635783 1.042214869 0.971652298 1.083414523 1.034816304 1.023237762 1.043180876 1 21.63604775 -4.76391092 24.99999938 1.02795689 1.100141514 0.497017515 0.029731346 47.46775969 480164.234 0.007438883 0.016740094 1.72E-05 4.76391092 0.072184624 GGDSIGET(ph)PTPGASKR ddPTM_HeLa_A486_30min_R1 1 GGDSIGETPTPGASKR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GGDS(0.001)IGET(0.996)PT(0.002)PGASKR 96.012 0.00063284 612280000 520270 497460 329960 181370 512490 446130 523540 550290 378010 593400 TRUE FALSE FALSE 483801.7597 458039.4579 457729.3486 422238.5259 448208.7254 391091.0165 392544.7546 425000.9797 410776.2112 444808.7776 1.087662348 1.029744647 1.029047473 0.949258529 1.007643617 0.879234035 0.882502267 0.955468959 0.923489445 1 18.76282573 -5.074349553 0.910247024 0.92770443 1.087680257 0.607974231 0.040442844 0.555972278 0.754922627 0.016197046 0.069589274 8.43E-06 5.074349553 0.159975827 GGDVFGDTSFLSNHGGS(ph)SGSTHRSPR ddPTM_HeLa_A485_30min_R1 1 GGDVFGDTSFLSNHGGSSGSTHRSPR 26 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 GGDVFGDTSFLS(0.001)NHGGS(0.2)S(0.2)GS(0.2)T(0.2)HRS(0.2)PR 93.411 0.0018935 193730000 137650 166120 157420 64031 220590 106940 109160 149500 105290 66219 TRUE FALSE FALSE 168269.7676 185546.2889 215656.2088 67528.85139 198627.2851 112539.213 85837.07424 112834.8906 126420.7372 49711.82197 3.384904454 3.732437911 4.338127235 1.358406285 3.995574437 2.263831994 1.726693387 2.269779825 2.543071893 1 15.60130136 -1.792301453 0.098668023 4.03E-10 10.0949503 0.464677124 0.79878664 97.77620545 0.813034598 11.44876432 132.9260681 0.016132384 1.792301453 10.0949503 GGDVFGDTSFLSNHGGSSGSTHRS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GGDVFGDTSFLSNHGGSSGSTHRSPR 26 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 GGDVFGDTSFLSNHGGS(0.023)S(0.023)GS(0.023)T(0.023)HRS(0.907)PR 158.98 2.34E-10 945010000 288200 533320 538540 119680 653370 292150 365280 439470 278850 146730 TRUE FALSE FALSE 352309.0957 595687.1347 737768.3565 126217.8154 588318.1887 307446.5223 287234.9439 331689.2934 334812.6372 110152.9114 3.198363905 5.40782016 6.6976746 1.145841846 5.340922735 2.791088483 2.607601927 3.011171374 3.039525992 1 16.7491481 -7.079426432 0.225916642 0.544740102 5.632444972 0.326018715 1.441465875 2.993526701 0.623547475 4.571300041 5.998964471 8.33E-08 7.079426432 5.08770487 GGDVFGDTSFLSNHGGSSGSTHRS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GGDVFGDTSFLSNHGGSSGSTHRSPR 26 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 GGDVFGDTSFLSNHGGS(0.001)S(0.002)GS(0.002)T(0.002)HRS(0.994)PR 208.58 8.34E-29 469570000 449880 458520 654010 23549 771820 242700 385560 321730 380400 119270 TRUE FALSE FALSE 418345.7352 422185.2053 907260.187 54823.2621 675011.1387 212758.1416 289088.81 248479.1023 413373.3783 89404.01568 4.679272312 4.722217476 10.14786842 0.61320805 7.550121027 2.379738091 3.233510349 2.779283463 4.623655606 1 16.44805201 -6.146012844 0.972066231 2.817092757 5.818264844 0.199818382 2.476503403 0.924067967 1.873316024 1.324223807 1.358820208 7.14E-07 6.146012844 3.001172087 GGDVS(ph)PSPYSSSSWR ddPTM_HeLa_A485_30min_R1 5 GGDVSPSPYSSSSWR 15 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 GGDVS(0.991)PS(0.009)PYSSSSWR;GGDVS(0.914)PS(0.086)PYSSSSWR;GGDVS(0.656)PS(0.344)PYSSSSWR;GGDVS(0.988)PS(0.012)PYSSSSWR;GGDVS(0.996)PS(0.004)PYSSSSWR ;;;; 314.55 5.72E-78 6554350000 1813950 2198680 2497330 2372820 2937310 2255120 2668970 2372000 2226480 3294760 TRUE FALSE FALSE 2217456.919 2455796.5 3421196.29 2502441.148 2644861.103 2373194.596 2098722.756 1790263.281 2673314.114 2473436.968 0.89650836 0.992868034 1.383175045 1.011726266 1.069306046 0.959472437 0.848504645 0.723795797 1.080809476 1 21.2380857 -6.369732153 2.734315603 0.890960371 1.083030833 0.198481424 0.147060614 0.407362986 5.919394265 0.058475805 0.050604816 4.27E-07 6.369732153 0.192070463 GGDVS(ph)PSPYSSSSWR ddPTM_HeLa_A486_30min_R1 4 GGDVSPSPYSSSSWR 15 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 GGDVS(0.999)PS(0.001)PYSSSSWR;GGDVS(0.968)PS(0.032)PYSSSSWR;GGDVS(1)PSPYSSSSWR;GGDVS(0.987)PS(0.013)PYSSSSWR ;;; 298.75 2.31E-67 6125840000 1890940 2515690 2204160 1095033 2476190 2527900 2885660 3033020 2216170 2773830 TRUE FALSE FALSE 1758394.871 2316337.562 3057669.781 2549292.164 2165603.161 2216033.4 2163637.347 2342467.556 2408269.4 2079244.913 0.845689154 1.114028245 1.470567398 1.226066322 1.041533466 1.065787578 1.04058802 1.126595305 1.158242295 1 20.98762827 -5.764281027 24.9944704 1.076560541 1.182403503 0.078650656 0.148549822 193.6000746 1702867.396 0.048512107 0.057480976 1.72E-06 5.764281027 0.105842962 GGET(ph)PEGLATSVVHYGAGAK ddPTM_HeLa_A485_30min_R1 2 GGETPEGLATSVVHYGAGAK 20 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GGET(1)PEGLATSVVHYGAGAK;GGET(1)PEGLATSVVHYGAGAK ; 226.08 1.80E-35 176210000 480270 603810 552740 403510 728020 575650 676840 743550 553120 622960 TRUE FALSE FALSE 587104.4046 674420.3271 757221.5274 425552.7296 655535.7726 605790.1439 532227.6047 561193.1967 664126.1105 467667.5367 1.255388408 1.442093526 1.619144944 0.909947123 1.401713228 1.295343586 1.138046931 1.19998322 1.4200817 1 18.83512376 -14 0.089910832 0.125180742 1.522020753 0.188394039 0.183981809 364.9256797 2.275951024 62.54246873 4.38779965 1.00E-14 14 1.396840011 GGET(ph)PEGLATSVVHYGAGAK ddPTM_HeLa_A486_30min_R1 3 GGETPEGLATSVVHYGAGAK 20 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GGET(0.997)PEGLAT(0.002)S(0.002)VVHYGAGAK;GGET(1)PEGLATSVVHYGAGAK;GGET(1)PEGLATSVVHYGAGAK ;; 235.25 6.54E-46 378070000 783598 789495 569527 80755.6 823902 673934 727013 728053 611547 524957 TRUE FALSE FALSE 728671.8267 726932.5409 790063.1069 188003.118 720560.5286 590790.8751 545106.6578 562291.2252 664556.3864 393504.3503 1.851750371 1.84733038 2.007762065 0.477766301 1.831137389 1.501357926 1.385262088 1.428932678 1.688815856 1 18.58602006 GGET(ph)PGSEQWK ddPTM_HeLa_A485_30min_R1 1 GGETPGSEQWK 11 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 GGET(0.999)PGS(0.001)EQWK 168.98 1.96E-07 200090000 460710 338170 280210 471320 463990 270290 383910 249060 225060 418100 TRUE FALSE FALSE 563193.3501 377716.0398 383871.3395 497067.0182 417793.5264 284441.9665 301884.4922 187977.6445 270227.4776 313875.3646 1.794321612 1.203394986 1.223005635 1.583644574 1.331080975 0.906225842 0.961797345 0.598892636 0.860938793 1 18.25983227 -6.267297567 2.881502858 0.83086661 1.423474844 0.692866879 0.187827148 0.158854712 2.658951726 0.069925048 0.064675515 5.40E-07 6.267297567 0.592608234 GGET(ph)PGSEQWK ddPTM_HeLa_A486_30min_R1 1 GGETPGSEQWK 11 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 GGET(1)PGSEQWK 186.76 6.03E-10 243870000 424670 448330 312490 183670 441110 463030 526500 491620 293780 381780 TRUE FALSE FALSE 394902.826 412802.698 433494.4968 427593.0422 385781.8706 405906.0663 394764.1313 379688.858 319245.0869 286179.803 1.379911586 1.442459229 1.51476272 1.494141227 1.348040171 1.418360283 1.379426944 1.326749316 1.115540243 1 18.12656233 -7.766041729 1.242603877 0.99281036 1.437561271 0.906061815 0.047508645 0.124346879 0.394486799 0.047763832 0.015341773 1.71E-08 7.766041729 0.444750911 GGFDS(ph)PFYR ddPTM_HeLa_A485_30min_R1 6 GGFDSPFYR 9 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1;A0A2R8YEH9 Q92574 TSC1 Hamartin 1 0 GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR ;;;;; 195.4 4.43E-09 3203814000 2218650 3022250 3169250 2292510 3264110 2733540 2967650 2927300 2712230 3022210 TRUE FALSE FALSE 2712181.038 3375675.847 4341687.458 2417744.016 2939123.747 2876663.928 2333587.334 2209375.085 3256549.683 2268828.667 1.195410248 1.48784961 1.913625089 1.065635344 1.295436624 1.267907079 1.028542776 0.973795473 1.435344031 1 21.11351624 -5.299030614 24.99947189 1.156902709 1.527850822 0.400750121 0.212822628 555.0604026 369133.2275 0.060314233 0.089462623 5.02E-06 5.299030614 0.370948113 GGFDS(ph)PFYR ddPTM_HeLa_A486_30min_R1 6 GGFDSPFYR 9 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1;A0A2R8YEH9 Q92574 TSC1 Hamartin 1 0 GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(1)PFYR ;;;;; 175.34 2.40E-06 3624508000 2394194 2819552 2491259 770650 3030139 2340786 2559900 2622295 2259314 2490691 TRUE FALSE FALSE 2226373.364 2596120.431 3455941.203 1794112.146 2650070.712 2052003.623 1919385.944 2025255.673 2455153.157 1867005.762 1.192483392 1.390526202 1.851060813 0.960956941 1.419422889 1.099087997 1.028055715 1.08476134 1.315021735 1 20.83229495 -5.286465772 24.94087301 1.139718666 1.469273906 0.384729358 0.201533633 780.8887925 778218.6023 0.056625947 0.084028468 5.17E-06 5.286465772 0.32955524 GGGAPWPGGAQTYS(ph)PSSTCR ddPTM_HeLa_A485_30min_R1 4 GGGAPWPGGAQTYSPSSTCR 20 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 GGGAPWPGGAQTYS(0.994)PS(0.005)S(0.001)TCR;GGGAPWPGGAQT(0.008)YS(0.962)PS(0.021)S(0.004)T(0.004)CR;GGGAPWPGGAQTYS(0.998)PS(0.002)STCR;GGGAPWPGGAQTYS(0.967)PS(0.03)S(0.003)TCR ;;; 324.31 1.53E-102 817830000 267991 359927 385504 266891 433205 322871 400244 435356 361917 384774 TRUE FALSE FALSE 327604.6734 402017.3317 528117.9718 281470.5795 390073.5891 339776.0263 314728.5997 328584.2584 434550.4222 288856.923 1.134141671 1.391752455 1.828302975 0.974429058 1.350404155 1.17627794 1.089565714 1.137532917 1.504379461 1 18.13999555 -5.289042541 24.99958974 1.185481211 1.445434646 0.253826645 0.215823748 1031.463356 934171.7564 0.060248319 0.089387442 5.14E-06 5.289042541 0.259953436 GGGAPWPGGAQTYS(ph)PSSTCR ddPTM_HeLa_A486_30min_R1 2 GGGAPWPGGAQTYSPSSTCR 20 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 GGGAPWPGGAQTYS(0.991)PS(0.008)S(0.001)TCR;GGGAPWPGGAQTYS(0.999)PS(0.001)STCR ; 203.59 2.40E-26 525210000 253840 319540 305530 90122 392300 269280 289340 328850 251655 284240 TRUE FALSE FALSE 236047.1268 294218.4867 423839.3984 209808.5705 343094.0759 236058.9714 216944.0717 253978.0337 273468.658 213064.4539 1.107867232 1.380889591 1.989254381 0.984718787 1.610283037 1.107922824 1.018208658 1.192024428 1.283502025 1 17.7009304 -6.285393614 24.10698649 1.125950373 1.420772326 0.234462548 0.265652815 778.3123872 783272.3533 0.092727407 0.081827732 5.18E-07 6.285393614 0.294821953 GGGDRYEDRYDR ddPTM_HeLa_A486_30min_R1 2 GGGDRYEDRYDR 12 2 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 165.58 1.87E-10 1028750000 579130 681900 801450 271776 1111140 726730 743510 866540 576130 681350 FALSE FALSE TRUE 538535.9776 627863.7606 1111792.904 632708.2628 971770.4602 637073.4414 557475.934 669247.7584 626069.4123 510735.5252 1.054432189 1.229332462 2.176846624 1.238817806 1.902688206 1.247364654 1.091515876 1.310360696 1.225819199 1 18.96221689 -6.497089733 24.37459109 1.180880543 1.530070124 0.228793262 0.319085409 862.7356543 815419.7126 0.112871509 0.099139219 3.18E-07 6.497089733 0.349189581 GGGDRYEDRYDRR ddPTM_HeLa_A485_30min_R1 4 GGGDRYEDRYDRR 13 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;; ;;; 126.95 1.95E-05 358090000 103849 282321 247609 43530.2 273343 265284 220972 557640 144032 87935 FALSE FALSE TRUE 126949.8518 315335.9851 339209.873 45908.1446 246128.0112 279173.86 173759.527 420877.9157 172937.9013 66014.42282 1.92306236 4.776774099 5.138420643 0.695425979 3.728397532 4.228982821 2.63214491 6.375544883 2.619698755 1 16.01049364 GGGDRYEDRYDRR ddPTM_HeLa_A486_30min_R1 1 GGGDRYEDRYDRR 13 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 53.754 0.032235 43653000 13117 8072.9 12822 7839.4 28809 9208.2 13932 14023 4961.2 9615 FALSE FALSE TRUE 12197.56604 7433.174003 17787.02179 18250.51938 25195.50659 8072.185906 10446.06624 10830.26902 5391.240811 7207.341417 1.692380773 1.031333688 2.467903316 2.53221241 3.495811441 1.119994938 1.449364702 1.502671844 0.748020733 1 12.81525147 GGGESLQEAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GGGESLQEASPR 12 0 P98175-5 P98175-5 RBM10 RNA-binding protein 10 1 0 GGGESLQEAS(1)PR 76.357 0.0084301 568210000 137410 196080 188160 140720 249420 170000 176840 216080 208900 184040 TRUE FALSE FALSE 167976.3804 219009.8503 257768.214 148407.1773 224586.869 178900.9371 139056.6894 163086.0412 250824.3139 138162.215 1.215791021 1.585164586 1.865692541 1.074151694 1.625530316 1.29486153 1.006474088 1.180395387 1.815433502 1 17.07600359 -6.441951656 8.063477067 1.2495319 1.478070353 0.118384596 0.293565811 0.71564511 64.94246143 0.103560566 0.091065703 3.61E-07 6.441951656 0.228538453 GGGESLQEAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GGGESLQEASPR 12 0 P98175-5 P98175-5 RBM10 RNA-binding protein 10 1 0 GGGESLQEAS(1)PR;GGGESLQEAS(1)PR ; 98.253 0.0012738 933960000 715300 826410 903600 223990 1077800 665720 659260 771530 758970 639890 TRUE FALSE FALSE 665161.1638 760922.2619 1253498.119 521460.0398 942612.2739 583590.2349 494306.1751 595869.4614 824758.1307 479657.379 1.386742273 1.586387065 2.613319786 1.087151085 1.965178303 1.216681449 1.030540124 1.242281444 1.719473455 1 18.87164473 -6.277459297 24.12647748 1.243734372 1.733510744 0.255553018 0.414647841 757.3115654 1140529.911 0.144497489 0.127877867 5.28E-07 6.277459297 0.489776372 GGGFGDRDR ddPTM_HeLa_A485_30min_R1 4 GGGFGDRDR 9 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ;;; ;;; 98.033 0.002892 364273000 339803 589498 561691 349964 583757 554246 597334 657287 520504 487347 FALSE FALSE TRUE 415391.005 658434.6631 769483.8748 369081.6472 525636.1034 583265.4635 469708.7111 496086.3327 624964.3785 365860.3619 1.135381278 1.799688438 2.103217388 1.008804685 1.436712359 1.594229724 1.283846954 1.355944465 1.708204669 1 18.48093359 -12.1659529 0.244670473 1.52E-18 1.552249865 0.170685354 0.311318693 117.6787938 2.62169932 61.57431812 0.5018418 6.82E-13 12.1659529 1.552249865 GGGFGDRDR ddPTM_HeLa_A486_30min_R1 2 GGGFGDRDR 9 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 131.11 0.00030074 136487000 206627 186461 207422 64416 246665 193645 206807 196116 185972 227921 FALSE FALSE TRUE 192143.5143 171685.1513 287741.3534 149963.7034 215725.9756 169755.0487 155061.7012 151464.668 202092.2027 170848.0981 1.124645322 1.0048994 1.684194068 0.87776045 1.262677068 0.993602215 0.907599809 0.886545825 1.182876514 1 17.38235466 -6.280876485 19.07281413 0.981625424 1.190521082 0.178691056 0.210008748 67.40778408 66141.89105 0.072286276 0.064008933 5.24E-07 6.280876485 0.208895657 GGGGGGQGAEGPPGT(ph)PR ddPTM_HeLa_A485_30min_R1 2 GGGGGGQGAEGPPGTPR 17 0 Q8TER5-4;Q8TER5;Q8TER5-3;G3V485;G3V3N2;G3V5C1 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 GGGGGGQGAEGPPGT(1)PR;GGGGGGQGAEGPPGT(1)PR ; 265.4 3.62E-51 1099630000 409940 574210 577790 383830 586870 559720 575670 626360 515390 558970 TRUE FALSE FALSE 501129.7387 641358.8645 791538.5648 404797.661 528439.1622 589026.0737 452673.4017 472744.2279 618824.0456 419629.0661 1.194220752 1.528394757 1.886281549 0.964655916 1.259300665 1.403682732 1.078746537 1.12657646 1.474692998 1 18.67875509 -5.27394279 24.9717033 1.199636358 1.535508621 0.349413479 0.218046619 847.4465315 1692510.974 0.06134126 0.091689018 5.32E-06 5.27394279 0.335872263 GGGGGGQGAEGPPGT(ph)PR ddPTM_HeLa_A486_30min_R1 2 GGGGGGQGAEGPPGTPR 17 0 Q8TER5-4;Q8TER5;Q8TER5-3;G3V485;G3V3N2;G3V5C1 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 GGGGGGQGAEGPPGT(1)PR;GGGGGGQGAEGPPGT(1)PR ; 210.43 8.06E-25 1266680000 576720 614380 550030 186576 711580 491880 568760 535390 552160 570290 TRUE FALSE FALSE 536294.9062 565694.2913 763016.3463 434358.357 622327.0012 431196.8467 426450.2323 413493.3845 600021.6734 427485.672 1.254533055 1.323305852 1.784893381 1.016076995 1.455784467 1.008681401 0.997577837 0.967268406 1.403606513 1 18.70551654 -6.02458213 1.559092839 1.072401693 1.39867781 0.273341063 0.220360386 0.501319887 2.477253289 0.087368761 0.095308768 9.45E-07 6.02458213 0.326276118 GGGGGGS(ph)PGPTAGPEPLSLPGILHFIQHEWAR ddPTM_HeLa_A485_30min_R1 1 GGGGGGSPGPTAGPEPLSLPGILHFIQHEWAR 32 0 Q9NRL3;Q9NRL3-3;M0R0W8 Q9NRL3 STRN4 Striatin-4 1 0 GGGGGGS(0.994)PGPT(0.006)AGPEPLSLPGILHFIQHEWAR 55.059 0.014178 128560000 13406 10036 12456 15689 17553 10375 19275 19813 11914 20054 TRUE FALSE FALSE 16388.11845 11209.6229 17063.99274 16546.05034 15805.36169 10918.21896 15156.73879 14953.83068 14305.03052 15054.90687 1.088556614 0.74458268 1.133450568 1.099047008 1.049847855 0.725226602 1.006764035 0.993286164 0.950190569 1 13.87794616 GGGGGQDNGLEGLGNDS(ph)R ddPTM_HeLa_A485_30min_R1 6 GGGGGQDNGLEGLGNDSR 18 0 P08621-4;P08621;P08621-2 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R ;;;;; 368.96 1.60E-129 6421755000 2393591 3266819 2960167 2231536 2705943 2509047 2789168 2809175 2772740 2967556 TRUE FALSE FALSE 2926037.06 3648845.065 4055255.956 2353439.161 2436529.814 2640416.821 2193239.471 2120220.427 3329203.485 2227798.903 1.31342064 1.637870034 1.820297133 1.056396589 1.093693785 1.185213269 0.984487185 0.951710868 1.494391384 1 21.08718758 -5.274636816 24.82411167 1.104699325 1.595263345 0.587241887 0.184798799 456.5113573 858687.6821 0.051438229 0.076818846 5.31E-06 5.274636816 0.49056402 GGGGGQDNGLEGLGNDS(ph)R ddPTM_HeLa_A486_30min_R1 6 GGGGGQDNGLEGLGNDSR 18 0 P08621-4;P08621;P08621-2 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R ;;;;; 337.04 9.34E-102 6043660000 2124380 2452110 1970654 593024 2298200 1967526 1930353 2088464 2236137 2665520 TRUE FALSE FALSE 1975471.932 2257795.873 2733744.005 1380589.842 2009938.326 1724792.646 1447358.262 1612966.338 2429967.156 1998056.442 0.988696761 1.129996043 1.368201592 0.690966387 1.005946721 0.863235197 0.724383071 0.807267655 1.216165422 1 20.93016591 -5.262926199 24.99858139 0.888530254 1.159067916 0.336321479 0.167446895 146.7711811 2467746.272 0.046321191 0.073111522 5.46E-06 5.262926199 0.270537662 GGGGNFGPGPGS(ph)NFR ddPTM_HeLa_A485_30min_R1 1 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGGGNFGPGPGS(1)NFR 114.56 0.00016539 202100000 165810 202940 195670 192520 240840 185140 264410 241420 181310 310890 TRUE FALSE FALSE 202693.8625 226672.0677 268056.4755 203036.8801 216861.124 194833.6441 207916.6435 182211.3665 217697.2539 233390.8445 0.868473924 0.971212338 1.148530381 0.869943637 0.929175797 0.834795574 0.890851755 0.780713429 0.932758328 1 17.83238844 GGGGNFGPGPGS(ph)NFR ddPTM_HeLa_A486_30min_R1 1 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGGGNFGPGPGS(1)NFR 101.9 0.0004817 337360000 309470 349630 288450 139200 355640 340910 534860 486090 252770 450750 TRUE FALSE FALSE 287777.7511 321924.0455 400145.565 324064.6348 311032.315 298851.9903 401032.3708 375417.9183 274680.3071 337879.2661 0.851717699 0.952778338 1.184285646 0.959113705 0.920542768 0.884493428 1.18691027 1.111100786 0.812954018 1 18.3661483 GGGGNFGPGPGSNFR ddPTM_HeLa_A485_30min_R1 2 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 325.39 2.33E-97 124881000 100637 151855 165353 100063 164734 139789 153605 166309 136741 138875 FALSE FALSE TRUE 123023.3535 169613.1213 226523.9556 105529.1883 148332.5045 147108.1359 120786.0369 125521.457 164183.6644 104256.0183 1.180012008 1.626890457 2.172766228 1.012211957 1.422771625 1.411027759 1.158552176 1.203973248 1.574812343 1 16.66977114 -5.289363484 24.99228537 1.27276553 1.656590004 0.30305035 0.280600013 905.8904818 810776.765 0.07880791 0.116918207 5.14E-06 5.289363484 0.383824474 GGGGSSSSSSELST(ph)PEKPPHQR ddPTM_HeLa_A486_30min_R1 1 GGGGSSSSSSELSTPEKPPHQR 22 1 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1 Q92574 TSC1 Hamartin 1 0 GGGGSSSSSSELS(0.017)T(0.983)PEKPPHQR 198.83 1.09E-26 151960000 89213 92856 59921 31538 91448 80322 103070 98627 76569 88188 TRUE FALSE FALSE 82959.6294 85497.75238 83124.01594 73422.05784 79977.73912 70412.68829 77280.79584 76171.78511 83206.06257 66105.15079 1.25496468 1.293359918 1.257451423 1.110685884 1.20985639 1.065161904 1.169058612 1.152282147 1.258692576 1 16.01247507 -5.185086333 5.725845639 1.145689754 1.273448412 0.428546849 0.068766878 0.215770493 12.35614942 0.01778612 0.031210441 6.53E-06 5.185086333 0.127758658 GGGPGKS(ph)PTQGST ddPTM_HeLa_A485_30min_R1 3 GGGPGKSPTQGST 13 1 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A 1 0 GGGPGKS(0.731)PT(0.26)QGS(0.004)T(0.004);GGGPGKS(0.73)PT(0.245)QGS(0.013)T(0.013);GGGPGKS(0.98)PT(0.019)QGST ;; 135.13 0.00016088 1998370000 1499340 1788590 1541490 1676550 2247570 1926520 2563310 2892990 1656780 2225930 TRUE FALSE FALSE 1832863.01 1997750.042 2111751.298 1768135.681 2023794.039 2027389.608 2015637.878 2183479.666 1989280.549 1671046.616 1.096835356 1.195508266 1.263729735 1.058100752 1.211093706 1.213245393 1.206212836 1.306653953 1.190439889 1 20.67232055 -4.260628446 21.50656276 1.193562195 1.096835175 0.070003821 0.086254109 23.05147414 610443.833 0.020450196 0.11857981 5.49E-05 4.260628446 -0.096727019 GGGPGKS(ph)PTQGST ddPTM_HeLa_A486_30min_R1 2 GGGPGKSPTQGST 13 1 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A 1 0 GGGPGKS(0.83)PT(0.161)QGS(0.004)T(0.004);GGGPGKS(0.419)PT(0.419)QGS(0.081)T(0.081) ; 88.075 0.023895 1170220000 721470 684730 493240 308940 808160 698770 858320 905830 528550 807100 TRUE FALSE FALSE 670898.6787 630469.5011 684235.7374 719227.933 706793.037 612562.862 643559.2576 699592.2831 574365.1396 604996.9067 1.108929106 1.042103677 1.130973944 1.188812579 1.168258927 1.012505775 1.063739749 1.156356794 0.949368721 1 19.20656824 -6.264213583 24.98704687 1.047875604 1.12661805 0.34536192 0.061921903 346.9028255 3124513.641 0.022134786 0.020447991 5.44E-07 6.264213583 0.078742446 GGGPGKS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 GGGPGKSPTR 10 1 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 0 GGGPGKS(0.796)PT(0.204)R 49.448 0.024493 156630000 255860 98874 39590 326530 46949 403100 90416 135230 148340 229420 TRUE FALSE FALSE 312775.1743 110436.4542 54235.98848 344367.5071 42274.59271 424205.6927 71097.88297 102064.6305 178110.4773 172229.8162 1.816033839 0.641215654 0.314904757 1.999465103 0.245454554 2.463021224 0.412808215 0.592607208 1.034144269 1 17.3939754 GGGPGKS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 GGGPGKSPTR 10 1 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 0 GGGPGKS(0.614)PT(0.386)R 55.258 0.019026 83482000 133520 57984 232400 66900 67820 504760 97717 128970 353430 270680 TRUE FALSE FALSE 124160.9375 53389.13667 322391.5039 155746.5809 59313.3832 442487.8432 73267.17305 99606.3464 384065.597 202899.9662 0.61193178 0.263130338 1.58891847 0.767602794 0.292328206 2.180817728 0.361099977 0.490913568 1.892881523 1 17.6304091 -4.734420269 24.99809625 1.029159149 0.437530704 0.142219145 0.616010547 450.5889656 416878.5011 0.152510345 0.403277236 1.84E-05 4.734420269 -0.591628446 GGGPGKS(ph)PTRGST ddPTM_HeLa_A485_30min_R1 3 GGGPGKSPTRGST 13 2 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 0 GGGPGKS(0.654)PT(0.339)RGS(0.003)T(0.003);GGGPGKS(0.916)PT(0.056)RGS(0.006)T(0.022);GGGPGKS(0.989)PT(0.011)RGST ;; 105.99 0.0010148 1019350000 465670 1303030 748270 336513 1228960 1633340 1896680 4029870 729580 592330 TRUE FALSE FALSE 569256.685 1455408.024 1025086.211 354895.8531 1106600.427 1718859.157 1491438.824 3041538.064 876000.0139 444673.032 1.280169122 3.272984685 2.30525833 0.798105186 2.488571034 3.865445019 3.35401231 6.83994271 1.969986824 1 18.76238539 -6.163497374 4.173180462 3.76865078 2.001991199 0.149406408 1.557171528 0.35930961 11.0035727 0.513214234 0.511765056 6.86E-07 6.163497374 -1.76665958 GGGPGKSPT(ph)QGST ddPTM_HeLa_A485_30min_R1 1 GGGPGKSPTQGST 13 1 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A 1 0 GGGPGKS(0.025)PT(0.974)QGS(0.001)T 134.06 3.14E-05 300100000 369700 447530 392170 447850 564680 491190 685890 794800 454830 639100 TRUE FALSE FALSE 451938.4896 499864.7405 537250.0026 472314.9115 508458.4765 516907.9489 539343.9983 599874.0538 546110.2091 479784.1318 0.941962144 1.041853424 1.11977443 0.984432123 1.059765096 1.077376084 1.124138884 1.250299904 1.138241498 1 18.87202592 -6.5904566 2.138888042 1.150717215 1.032553938 0.278903004 0.072053428 0.361265501 3.35314993 0.032085271 0.023564379 2.57E-07 6.5904566 -0.118163277 GGGPGKSPT(ph)QGST ddPTM_HeLa_A486_30min_R1 1 GGGPGKSPTQGST 13 1 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A 1 0 GGGPGKS(0.128)PT(0.617)QGS(0.128)T(0.128) 71.879 0.022273 874320000 665140 685320 499030 288300 765670 693400 837770 827990 520220 826940 TRUE FALSE FALSE 618517.1208 631012.7473 692267.7805 671176.9699 669632.529 607855.358 628151.085 639474.7519 565313.0885 619868.8415 0.997819344 1.017977845 1.11679719 1.082772556 1.080280995 0.980619314 1.013361284 1.031629127 0.911988231 1 19.24160346 -6.265666361 24.77003976 0.991111515 1.061360633 0.408999892 0.042890022 358.6788513 2101844.97 0.015549613 0.014207931 5.42E-07 6.265666361 0.070249118 GGGPGKSPT(ph)R ddPTM_HeLa_A485_30min_R1 2 GGGPGKSPTR 10 1 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 0 GGGPGKS(0.064)PT(0.936)R;GGGPGKS(0.288)PT(0.712)R ; 78.324 0.010323 506900000 1368610 596460 201805 1882550 239830 2211720 457580 716220 778960 1238230 TRUE FALSE FALSE 1673052.573 666210.8085 276461.0673 1985388.94 215951.6831 2327522.239 359814.2949 540565.922 935290.127 929562.0489 1.799828828 0.71669321 0.29741002 2.135832613 0.232315512 2.503891205 0.387079373 0.58152753 1.006162126 1 19.82619164 GGGPGKSPT(ph)RGST ddPTM_HeLa_A485_30min_R1 1 GGGPGKSPTRGST 13 2 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 0 GGGPGKS(0.285)PT(0.493)RGS(0.026)T(0.196) 75.088 0.0050147 81963000 91903 266030 146710 68795 250890 337690 406200 856020 160650 120550 TRUE FALSE FALSE 112346.5053 297139.8943 200984.1341 72553.09665 225910.5107 355370.9262 319412.0517 646079.7528 192890.9814 90499.10356 1.241410145 3.283346273 2.22084116 0.801699617 2.496273463 3.926789463 3.529449896 7.139073509 2.131413173 1 16.46561588 -6.182077319 3.868299068 3.93653996 1.977818553 0.170268254 1.613977038 0.342384282 9.762808435 0.539277959 0.532927358 6.58E-07 6.182077319 -1.958721407 GGGPLILLDLNDENS(ph)NQSFHSEGSLQK ddPTM_HeLa_A485_30min_R1 2 GGGPLILLDLNDENSNQSFHSEGSLQK 27 0 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GGGPLILLDLNDENS(0.954)NQS(0.046)FHSEGSLQK;GGGPLILLDLNDENS(0.973)NQS(0.027)FHSEGSLQK ; 174.46 2.11E-14 179759000 62816 82695 73214 41956 122833 82762 106338 121488 94899 112370 TRUE FALSE FALSE 76789.20249 92365.4609 100298.9053 44247.95004 110603.3152 87095.29035 83618.0176 91692.87751 113944.3588 84358.22702 0.910275206 1.094919419 1.188964122 0.524524419 1.311114744 1.032445719 0.991225403 1.086946475 1.350720171 1 16.36424115 -7.528942742 24.58194049 1.189851206 1.013948109 0.092403636 0.209418092 306.9573618 1244276.67 0.134988418 0.051339784 2.96E-08 7.528942742 -0.175903097 GGGPLILLDLNDENS(ph)NQSFHSEGSLQK ddPTM_HeLa_A486_30min_R1 1 GGGPLILLDLNDENSNQSFHSEGSLQK 27 0 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GGGPLILLDLNDENS(1)NQSFHSEGSLQK 294.49 4.49E-92 118830000 61427 71297 55118 6722.2 87897 73417 87932 73087 85387 74288 TRUE FALSE FALSE 57121.28451 65647.16606 76461.16571 15649.62132 76872.13865 64359.55699 65930.48355 56446.68558 92788.41391 55685.80127 1.025778263 1.178885184 1.373081898 0.281034321 1.380462109 1.15576243 1.183972971 1.013663884 1.666284974 1 15.7650219 GGGPLILLDLNDENSNQS(ph)FHSEGSLQK ddPTM_HeLa_A486_30min_R1 1 GGGPLILLDLNDENSNQSFHSEGSLQK 27 0 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GGGPLILLDLNDENS(0.011)NQS(0.97)FHS(0.019)EGSLQK 131.81 3.92E-06 127410000 35501 40864 29068 8422.8 37474 35054 37831 44165 31541 36649 TRUE FALSE FALSE 33012.56323 37625.78782 40323.90807 19608.70406 32773.66149 30729.39388 28365.28366 34109.59362 34274.99928 27471.85186 1.201686854 1.369612359 1.467826351 0.713774381 1.192990617 1.118577446 1.032521718 1.241619742 1.247640656 1 14.74566654 -5.164106913 24.42381971 1.092561184 1.348699228 0.37537661 0.157775164 43.60669959 10936.90237 0.04271859 0.073990774 6.85E-06 5.164106913 0.256138044 GGGPVTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_HeLa_A485_30min_R1 4 GGGPVTLQDYRLPDSDDDEDEETAIQR 27 1 Q96K21-3 Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 GGGPVTLQDYRLPDS(1)DDDEDEETAIQR;GGGPVTLQDYRLPDS(1)DDDEDEETAIQR;GGGPVTLQDYRLPDS(1)DDDEDEETAIQR;GGGPVTLQDYRLPDS(1)DDDEDEETAIQR ;;; 305.78 4.83E-93 3127310000 418256 532728 641159 429910 711861 594156 598367 674924 552950 534604 TRUE FALSE FALSE 511295.6042 595025.9055 878350.395 453394.8947 640985.6193 625265.0894 470521.0022 509397.8308 663921.993 401337.0615 1.273980535 1.482608916 2.188560388 1.129711004 1.597125411 1.55795502 1.172383633 1.269251907 1.654275313 1 18.61445486 -6.743962149 24.49883182 1.296415389 1.54944688 0.154981328 0.299897736 388.5409377 544639.6661 0.114163167 0.08820962 1.80E-07 6.743962149 0.253031491 GGGPVTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_HeLa_A486_30min_R1 3 GGGPVTLQDYRLPDSDDDEDEETAIQR 27 1 Q96K21-3 Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 GGGPVTLQDYRLPDS(1)DDDEDEETAIQR;GGGPVTLQDYRLPDS(1)DDDEDEETAIQR;GGGPVTLQDYRLPDS(1)DDDEDEETAIQR ;; 253.93 3.50E-63 2141790000 390756 551190 550370 188756 735780 546704 625970 581910 432650 578170 TRUE FALSE FALSE 363366.0223 507511.697 763488.0034 439433.5072 643491.6115 479257.219 469345.6852 449421.796 470152.4504 433392.4687 0.838422558 1.171021034 1.761654986 1.013938956 1.48477802 1.105827289 1.08295764 1.036985708 1.084819152 1 18.72531456 -6.499445108 23.34528778 1.060004064 1.267333384 0.143918668 0.235448148 653.9044223 651440.6331 0.083671182 0.073241923 3.17E-07 6.499445108 0.20732932 GGGQIIPTAR ddPTM_HeLa_A485_30min_R1 2 GGGQIIPTAR 10 0 P13639;K7EJ74;Q15029-3;Q15029;Q15029-2;K7EP67 P13639;Q15029-3 EEF2;EFTUD2 Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component 0 0 ; ; 133.32 0.0028401 58778000 56791 82240 89173 58998 96063 81703 93187 98217 76222 76606 FALSE FALSE TRUE 69423.96202 91857.25261 122161.8035 62220.91135 86498.63042 85980.84274 73276.83618 74129.12675 91519.05625 57509.53403 1.207173092 1.597252597 2.124200892 1.081923413 1.504074618 1.495071108 1.274168491 1.288988478 1.591371897 1 15.81151353 -12.42094783 0.163583968 1.68E-11 1.608400895 0.202659914 0.274305844 116.8531158 1.744153034 40.95068035 1.198745109 3.79E-13 12.42094783 1.608400895 GGGQLDLLGVSLAS(ph)LKK ddPTM_HeLa_A486_30min_R1 2 GGGQLDLLGVSLASLKK 17 1 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;F8WCC1;H0Y7D3 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 GGGQLDLLGVSLAS(1)LKK;GGGQLDLLGVS(0.057)LAS(0.943)LKK ; 177.03 3.97E-13 280100000 301319 319989 157380 244578 297636 402410 538750 503994 236228 560580 TRUE FALSE FALSE 280198.0941 294631.9063 218321.7508 569389.9443 260303.7175 352764.7456 403949.0517 389245.5683 256704.4332 420207.1192 0.666809488 0.701158769 0.519557477 1.355022127 0.619465272 0.839502068 0.961309395 0.926318357 0.610899772 1 18.68074108 GGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_HeLa_A485_30min_R1 5 GGGQSVQFTDIETLKQESPNGSR 23 1 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 GGGQSVQFTDIETLKQES(0.999)PNGS(0.001)R;GGGQSVQFTDIET(0.002)LKQES(0.934)PNGS(0.064)R;GGGQSVQFTDIETLKQES(1)PNGSR;GGGQSVQFTDIETLKQES(1)PNGSR;GGGQSVQFTDIET(0.001)LKQES(0.999)PNGSR ;;;; 271.18 5.65E-75 4824890000 1161330 1217498 1181108 1721907 1915120 1452171 2108570 2520560 1454083 3443170 TRUE FALSE FALSE 1419663.852 1359873.8 1618048.999 1815970.419 1724443.928 1528204.428 1658056.794 1902388.708 1745904.12 2584851.086 0.549224619 0.526093672 0.625973778 0.702543535 0.667134729 0.591215655 0.641451573 0.735976134 0.675437022 1 21.30164974 -14 0.149930931 2.32055535 0.521478096 0.856775449 0.047658146 51.81851601 0.460984824 20.29478792 0.267359758 1.00E-14 14 -1.799077254 GGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_HeLa_A486_30min_R1 2 GGGQSVQFTDIETLKQESPNGSR 23 1 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 GGGQSVQFTDIETLKQES(1)PNGSR;GGGQSVQFTDIETLKQES(0.972)PNGS(0.028)R ; 210.73 1.52E-29 3201700000 1743350 1831520 1326000 1011530 2103640 2045620 2463200 2452500 1641860 2366100 TRUE FALSE FALSE 1621150.168 1686383.685 1839462.712 2354892.96 1839781.856 1793252.203 1846881.307 1894119.288 1784177.747 1773613.159 0.914038193 0.950818208 1.037127348 1.327737645 1.037307288 1.011072901 1.041310106 1.067943862 1.005956534 1 20.75825995 -4.782373602 4.142820765 1.07539075 0.927535636 0.262625469 0.090471041 0.264238969 10.10768991 0.025060315 0.062714933 1.65E-05 4.782373602 -0.147855114 GGGQSVQFTDIETLKQES(ph)PNGSRK ddPTM_HeLa_A486_30min_R1 1 GGGQSVQFTDIETLKQESPNGSRK 24 2 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 GGGQSVQFTDIET(0.222)LKQES(0.661)PNGS(0.117)RK 102.99 0.00028195 238100000 51296 45587 33234 41842 56183 56354 72361 77608 37624 85989 TRUE FALSE FALSE 47700.41529 41974.52009 46103.09484 97410.29058 49136.00425 49401.61645 54255.51244 59938.35257 40885.27861 64456.79471 0.740037036 0.651203962 0.715255778 1.511249373 0.762309148 0.766429927 0.841734571 0.929899677 0.634305178 1 15.97604483 -5.038001308 24.99587237 0.917871581 0.692521696 0.168540843 0.222776303 956.7874346 629339.0259 0.061643235 0.106802132 9.16E-06 5.038001308 -0.225349884 GGGS(ph)PSAAANYLLCTNCR ddPTM_HeLa_A486_30min_R1 1 GGGSPSAAANYLLCTNCR 18 0 P58005-3;P58005 P58005-3 SESN3 Sestrin-3 1 0 GGGS(0.992)PS(0.008)AAANYLLCTNCR 94.281 0.00058488 94407000 55322 72558 45832 25078 69838 65013 91457 80932 53912 88610 TRUE FALSE FALSE 51444.21348 66808.23983 63579.37782 58382.85137 61078.26683 56992.35706 68573.49127 62505.55033 58585.13557 66421.47925 0.77451171 1.005822824 0.957211109 0.878975477 0.919555956 0.858041069 1.032399339 0.941044238 0.88202094 1 16.01936223 -6.743451171 24.99834334 0.9589532 0.906541826 0.172085229 0.068158738 535.9852601 744862.563 0.025825799 0.019963226 1.81E-07 6.743451171 -0.052411374 GGGSAAAAAAAAASGGGVS(ph)PDNSIEHSDYR ddPTM_HeLa_A485_30min_R1 3 GGGSAAAAAAAAASGGGVSPDNSIEHSDYR 30 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 0 GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR;GGGSAAAAAAAAAS(0.001)GGGVS(0.998)PDNS(0.001)IEHSDYR;GGGSAAAAAAAAASGGGVS(0.999)PDNS(0.001)IEHSDYR ;; 211.48 1.68E-29 795140000 201134 270427 288122 248260 352118 303896 305856 422440 272948 317640 TRUE FALSE FALSE 245875.5644 302051.0852 394710.3176 261821.8152 317059.8956 319807.5246 240507.367 318835.9276 327726.16 238458.1937 1.031105539 1.266683608 1.655260033 1.097977851 1.329624663 1.34114714 1.008593428 1.337072644 1.374354787 1 17.86337683 GGGSAAAAAAAAASGGGVS(ph)PDNSIEHSDYR ddPTM_HeLa_A486_30min_R1 2 GGGSAAAAAAAAASGGGVSPDNSIEHSDYR 30 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 0 GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR;GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR ; 202.5 5.49E-29 438210000 231780 255520 260450 55337 328920 229120 253680 302130 246790 232150 TRUE FALSE FALSE 215533.4189 235271.6646 361303.2151 128827.3326 287663.7865 200853.5039 190206.5808 233341.5945 268181.9559 174018.129 1.238568764 1.35199514 2.076238937 0.740309836 1.65306792 1.154210226 1.093027387 1.340903938 1.541115041 1 17.40887809 -5.266119986 24.99994987 1.242046382 1.53524035 0.186577066 0.319792736 744.859471 3978429.802 0.087234667 0.134317103 5.42E-06 5.266119986 0.293193968 GGGSCSGSAGGGGS(ph)GSLPSQR ddPTM_HeLa_A486_30min_R1 2 GGGSCSGSAGGGGSGSLPSQR 21 0 O15234 O15234 CASC3 Protein CASC3 1 0 GGGSCSGSAGGGGS(1)GSLPSQR;GGGSCSGSAGGGGS(1)GSLPSQR ; 264.03 4.08E-59 475220000 186410 230039 217944 55497 228024 190135 212257 213004 201731 206968 TRUE FALSE FALSE 173343.6216 211809.8719 302337.7535 129199.8207 199423.1037 166678.0769 159148.0536 164507.639 219217.2055 155141.8657 1.117323302 1.365265726 1.948782505 0.832785013 1.285424169 1.074359111 1.025822739 1.060369091 1.413011276 1 17.24322853 -5.284639917 24.99894908 1.105053744 1.465938225 0.338300281 0.242190106 904.3778529 974479.5768 0.067669959 0.10043867 5.19E-06 5.284639917 0.360884481 GGGT(ph)PDANSLAPPGK ddPTM_HeLa_A485_30min_R1 4 GGGTPDANSLAPPGK 15 0 Q5T171;Q9BRQ0 Q5T171;Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK ;;; 188.9 2.36E-17 4265490000 2358170 2709040 2594490 2645440 3295150 2941380 3583710 3832710 2640910 3474140 TRUE FALSE FALSE 2882736.781 3025838.662 3554299.817 2789953.689 2967073.296 3095386.109 2818021.082 2892731.863 3170916.413 2608100.835 1.105301123 1.160169355 1.362792331 1.069726159 1.137637493 1.186835289 1.08048778 1.109133445 1.215795176 1 21.31456822 -13.99999999 0.186396017 0.33830069 1.188402485 0.248310672 0.081399459 195.7776045 1.904491094 48.11025051 0.236448164 1.00E-14 13.99999999 0.850101795 GGGT(ph)PDANSLAPPGK ddPTM_HeLa_A486_30min_R1 4 GGGTPDANSLAPPGK 15 0 Q5T171;Q9BRQ0 Q5T171;Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK;GGGT(1)PDANSLAPPGK ;;; 254.72 1.59E-49 5425940000 6271440 6916380 4880890 2185500 7325810 6441910 7168900 7226390 5215740 7044470 TRUE FALSE FALSE 5831844.442 6368300.86 6770901.323 5087954.449 6406938.599 5647172.641 5375165.395 5581098.748 5667844.543 5280488.86 1.104413738 1.206005926 1.282248955 0.963538525 1.213323003 1.069441256 1.017929502 1.05692842 1.073356027 1 22.33224007 -5.996144545 0.744879461 1.034082377 1.184749265 0.304827522 0.081757647 0.884294877 1.091636108 0.052288367 0.069098881 1.01E-06 5.996144545 0.150666888 GGGTSSGGSSTNS(ph)LTGSRPPK ddPTM_HeLa_A485_30min_R1 3 GGGTSSGGSSTNSLTGSRPPK 21 1 Q5T9C2-3;Q5T9C2;Q5T9C2-2 Q5T9C2-3 FAM102A Protein FAM102A 1 0 GGGT(0.001)S(0.001)S(0.005)GGS(0.005)S(0.004)T(0.016)NS(0.943)LT(0.019)GS(0.005)RPPK;GGGTSSGGSS(0.001)T(0.022)NS(0.952)LT(0.02)GS(0.006)RPPK;GGGTSSGGSS(0.001)T(0.005)NS(0.942)LT(0.043)GS(0.009)RPPK ;; 85.467 0.00075073 259920000 324861 387439 335207 303558 450036 375403 493250 574410 339097 423010 TRUE FALSE FALSE 397125.2087 432746.6208 459214.0184 320140.6049 405228.8357 395058.5206 387863.108 433535.0469 407150.6575 317561.3919 1.250546253 1.362717987 1.446063754 1.008121935 1.276064553 1.244038257 1.221379922 1.365200739 1.282116365 1 18.276676 -10.98475879 2.647671331 0.751005858 1.273304013 0.356948317 0.109892275 21247465.05 8664725.833 32330135.85 0.028249041 1.04E-11 10.98475879 0.522298155 GGGTSSGGSSTNS(ph)LTGSRPPK ddPTM_HeLa_A486_30min_R1 2 GGGTSSGGSSTNSLTGSRPPK 21 1 Q5T9C2-3;Q5T9C2;Q5T9C2-2 Q5T9C2-3 FAM102A Protein FAM102A 1 0 GGGTSSGGSST(0.006)NS(0.986)LT(0.006)GS(0.002)RPPK;GGGTSS(0.001)GGS(0.004)S(0.004)T(0.064)NS(0.876)LT(0.042)GS(0.009)RPPK ; 113.23 3.19E-05 310890000 182444 205255 131614 72038 188698 179544 218180 215095 147288 230535 TRUE FALSE FALSE 169655.6177 188989.8463 182578.4655 167708.1046 165029.7373 157393.6867 163589.0563 166122.564 160055.0424 172807.5355 0.981760531 1.093643548 1.056542269 0.970490692 0.954991557 0.910803376 0.946654646 0.961315509 0.926204069 1 17.3988066 -5.373277532 3.534640128 0.946898337 1.049109856 0.604275296 0.033896789 0.147952875 3.389528624 0.009576588 0.014917219 4.23E-06 5.373277532 0.10221152 GGHMIAVS(ph)PQK ddPTM_HeLa_A486_30min_R1 1 GGHMIAVSPQK 11 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 GGHMIAVS(1)PQK 82.515 0.0040564 154420000 782020 747270 518630 308370 729800 743310 808680 838460 644850 950420 TRUE FALSE FALSE 727204.4364 688053.6037 719457.4254 717900.9442 638261.6789 651607.9696 606339.7107 647560.9615 700746.1172 712428.6458 1.020740029 0.965785988 1.009865942 1.007681188 0.895895586 0.914629098 0.851088336 0.908948518 0.983601826 1 19.442386 -5.756155818 24.9966819 0.916857799 0.999133683 0.42230691 0.042387616 118.2347374 559368.5034 0.012623087 0.01581102 1.75E-06 5.756155818 0.082275884 GGIDNPAITS(ph)DQELDDKK ddPTM_HeLa_A485_30min_R1 3 GGIDNPAITSDQELDDKK 18 1 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GGIDNPAIT(0.051)S(0.949)DQELDDKK;GGIDNPAIT(0.091)S(0.909)DQELDDKK;GGIDNPAIT(0.006)S(0.994)DQELDDKK ;; 203.79 1.61E-25 3491590000 1401310 892080 607735 2781840 1383880 1471400 2293320 1953120 918840 3699360 TRUE FALSE FALSE 1713026.575 996400.9959 832561.4665 2933804.875 1246096.048 1548440.229 1803333.447 1474114.258 1103242.76 2777177.634 0.616822833 0.358781874 0.299786897 1.056397992 0.448691518 0.557558944 0.649340332 0.530795812 0.397253221 1 21.40518803 -10.59129197 2.940677606 1.028327034 0.548460048 0.314536551 0.200967531 83872040.46 89441190.65 18495193.43 0.050164048 2.56E-11 10.59129197 -0.479866986 GGIDNPAITS(ph)DQELDDKK ddPTM_HeLa_A486_30min_R1 3 GGIDNPAITSDQELDDKK 18 1 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GGIDNPAIT(0.193)S(0.807)DQELDDKK;GGIDNPAIT(0.164)S(0.836)DQELDDKK;GGIDNPAIT(0.155)S(0.845)DQELDDKK ;; 207.67 1.07E-25 2177280000 740600 773820 331200 603820 649930 988380 1408390 1209730 515960 1765870 TRUE FALSE FALSE 688687.7645 712499.685 459449.5098 1405723.475 568409.719 866443.7247 1055995.926 934300.8872 560683.8282 1323684.658 0.520280839 0.538269958 0.347098916 1.061977614 0.429414752 0.654569591 0.797770012 0.705833434 0.423578097 1 20.33612804 -14 0.188657795 2.54665805 0.549986092 0.24204723 0.20196142 204.3192181 1.994270742 119.8573671 0.554470928 1.00E-14 14 -1.996671958 GGK(ac)GLGK(ac)GGAK ddPTM_HeLa_A485_30min_R1 2 GGKGLGKGGAK 11 2 P62805 P62805 HIST1H4A Histone H4 0 2 ; GGK(1)GLGK(1)GGAK;GGK(1)GLGK(1)GGAK 152.97 3.09E-05 965560000 613420 581790 751830 1025270 1019620 524010 863030 2300300 1272480 6420300 FALSE TRUE FALSE 749873.1627 649825.2796 1029963.203 1081277.904 918103.0527 551446.3533 678636.5902 1736147.818 1527855.064 4819837.367 0.155580594 0.134823072 0.213692522 0.224339085 0.190484239 0.114411818 0.140800724 0.360208797 0.316993074 1 22.20055304 -8.631861452 0.802152587 1.009536886 0.168187935 0.955794782 0.052554128 0.43962064 0.402917972 0.062716608 0.018823453 2.33E-09 8.631861452 -0.841348951 GGK(ac)GLGK(ac)GGAK ddPTM_HeLa_A486_30min_R1 2 GGKGLGKGGAK 11 2 P62805 P62805 HIST1H4A Histone H4 0 2 ; GGK(1)GLGK(1)GGAK;GGK(1)GLGK(1)GGAK 166.19 5.94E-06 957040000 1253870 1625780 1048990 485150 1517780 1480280 1595350 1454560 1291300 1173120 FALSE TRUE FALSE 1165980.188 1496947.272 1455187.021 1129453.718 1327405.88 1297658.104 1196176.556 1123388.441 1403230.924 879363.1163 1.325937109 1.70230846 1.65481926 1.284399695 1.509508251 1.475679478 1.360276016 1.277502342 1.595735479 1 19.7460995 -12.38205628 0.19957674 1.55E-16 1.554290683 0.473366637 0.145920972 58.65592695 1.036245316 24.75461344 0.370850582 4.15E-13 12.38205628 1.554290683 GGK(ac)GLGK(ac)GGAK(ac)R ddPTM_HeLa_A485_30min_R1 2 GGKGLGKGGAKR 12 3 P62805 P62805 HIST1H4A Histone H4 0 3 ; GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R 177.78 5.02E-09 14304500000 213918 334500 407100 328500 412520 195790 320550 1043130 572050 2073870 FALSE TRUE FALSE 261503.3211 373616.8652 557703.2308 346445.1232 371448.0604 206041.2617 252061.8738 787300.7319 686855.1878 1556892.376 0.167964931 0.239976039 0.358215661 0.222523489 0.238583004 0.132341365 0.161900641 0.505687319 0.441170628 1 20.57023779 -8.193938151 0.998838036 0.995729537 0.223534313 0.880432484 0.085520258 0.258178122 0.527305266 0.084894414 0.027898342 6.40E-09 8.193938151 -0.772195224 GGK(ac)GLGK(ac)GGAK(ac)R ddPTM_HeLa_A486_30min_R1 2 GGKGLGKGGAKR 12 3 P62805 P62805 HIST1H4A Histone H4 0 3 ; GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R 169.76 1.51E-08 11057900000 1793420 2271150 1973750 605790 2246320 1628070 1967990 1881570 1672220 1372000 FALSE TRUE FALSE 1667710.519 2091175.803 2738038.859 1410309.735 1964565.599 1427215.276 1475578.087 1453177.585 1817169.376 1028442.27 1.621588852 2.033342915 2.662316534 1.371306661 1.910234203 1.387744668 1.434769972 1.412988972 1.766914322 1 19.97202938 -5.293491511 24.99663282 1.499900543 2.098509046 0.438742054 0.328642702 609.0894866 475011.9978 0.091148595 0.135208144 5.09E-06 5.293491511 0.598608504 GGK(ac)GLGK(ac)GGAKR ddPTM_HeLa_A485_30min_R1 2 GGKGLGKGGAKR 12 3 P62805 P62805 HIST1H4A Histone H4 0 2 ; GGK(1)GLGK(0.999)GGAK(0.001)R;GGK(1)GLGK(1)GGAKR 138.42 0.00015866 239690000 94632 190919 158772 76265 225520 164920 232740 994540 245810 594340 FALSE TRUE FALSE 115682.5619 213245.3163 217508.3699 80431.16384 203066.437 173554.9562 183013.1977 750627.5056 295141.8123 446181.976 0.259272154 0.477933506 0.487488024 0.180265381 0.455120215 0.388977963 0.410176133 1.68233489 0.661483045 1 18.76727271 -7.162533262 9.482929324 1.127986388 0.381714843 0.645258465 0.24962847 0.214549725 19.06226724 0.107424066 0.061959731 6.88E-08 7.162533262 -0.746271545 GGK(ac)GLGK(ac)GGAKR ddPTM_HeLa_A486_30min_R1 2 GGKGLGKGGAKR 12 3 P62805 P62805 HIST1H4A Histone H4 0 2 ; GGK(1)GLGK(1)GGAKR;GGK(1)GLGK(0.997)GGAK(0.003)R 137.4 0.0001667 127833000 100429 88063 69444 38731 138657 75128 99740 101466 60935 82901 FALSE TRUE FALSE 93389.44572 81084.56716 96334.57657 90167.72536 121265.3461 65859.47121 74783.99706 78364.40679 66216.89486 62142.05001 1.502838186 1.304826074 1.550231712 1.450993737 1.95142172 1.059821348 1.203436273 1.26105281 1.065573068 1 15.92328221 -6.306727277 24.99989509 1.139633611 1.532610784 0.620670967 0.168912073 328.715292 181456.9355 0.059896857 0.052824265 4.93E-07 6.306727277 0.392977173 GGKDPLS(ph)SPGGPGSR ddPTM_HeLa_A485_30min_R1 1 GGKDPLSSPGGPGSR 15 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 GGKDPLS(0.5)S(0.5)PGGPGS(0.001)R 56.719 0.01789 956340000 741490 761880 701650 806270 869460 762780 920260 863430 699380 972640 TRUE FALSE FALSE 906431.8924 850975.2385 961219.5331 850314.4885 782893.5095 802717.9813 723638.9332 651672.4387 839739.1509 730178.7481 1.241383558 1.165434136 1.316416748 1.164529221 1.072194324 1.099344487 0.991043542 0.892483437 1.150046003 1 19.47789015 -5.890174698 1.370156588 1.009209338 1.236760942 0.629005067 0.07274051 0.266057299 1.041513151 0.029188507 0.036273261 1.29E-06 5.890174698 0.227551605 GGKDPLS(ph)SPGGPGSR ddPTM_HeLa_A486_30min_R1 1 GGKDPLSSPGGPGSR 15 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 GGKDPLS(0.588)S(0.412)PGGPGSR 77.08 0.0029832 735560000 816230 728850 486870 220880 722830 665820 751630 727760 572150 864970 TRUE FALSE FALSE 759016.492 671093.2716 675399.1028 514219.8027 632165.9213 583677.898 563564.2241 562064.9349 621744.4227 648375.882 1.170642698 1.035037376 1.041678325 0.793089035 0.974999131 0.900215314 0.869193688 0.866881311 0.958925895 1 19.3064709 -4.700425441 1.551911136 0.905342472 1.165013137 0.606763291 0.064816968 0.327633694 1.293657307 0.018164935 0.10202978 1.99E-05 4.700425441 0.259670665 GGKDPLSS(ph)PGGPGSR ddPTM_HeLa_A486_30min_R1 1 GGKDPLSSPGGPGSR 15 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 GGKDPLS(0.207)S(0.793)PGGPGSR 89.507 0.00059986 805600000 899530 855910 508360 236840 774330 755650 853360 835450 697910 1006100 TRUE FALSE FALSE 836477.5922 788084.5744 705210.6064 551375.4892 677206.3111 662425.5859 639840.3021 645236.2727 758405.4007 754166.0114 1.109142522 1.044974929 0.935086699 0.731106256 0.8979539 0.878355131 0.848407768 0.855562652 1.005621295 1 19.52452261 -4.763203917 3.083065691 0.877935506 1.092346088 0.498260768 0.074763114 0.182783621 3.508378669 0.019602688 0.056734524 1.73E-05 4.763203917 0.214410581 GGLHDFRS(ph)PPPGMGLNQNR ddPTM_HeLa_A485_30min_R1 1 GGLHDFRSPPPGMGLNQNR 19 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 GGLHDFRS(1)PPPGMGLNQNR 133.15 1.72E-06 140610000 197800 133840 85415 843520 167920 142020 273020 206470 109760 632960 TRUE FALSE FALSE 241799.9276 149491.4237 117013.5629 889599.3617 151201.2952 149455.9476 214687.0466 155832.9088 131787.8252 475174.7208 0.508865302 0.314603065 0.246253763 1.872152122 0.318201471 0.314528406 0.45180654 0.327948651 0.277346036 1 18.85809856 -10.47965538 3.382403547 1.008289767 0.52178265 0.090384821 0.461424021 227575857.7 268036517.6 17377173.29 0.117510607 3.31E-11 10.47965538 -0.486507117 GGLHDFRS(ph)PPPGMGLNQNR ddPTM_HeLa_A486_30min_R1 2 GGLHDFRSPPPGMGLNQNR 19 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 GGLHDFRS(1)PPPGMGLNQNR;GGLHDFRS(1)PPPGMGLNQNR ; 170.5 7.23E-13 296940000 194117 201966 196627 226111 237970 206847 221977 233550 174334 330670 TRUE FALSE FALSE 180510.4007 185961.4786 272766.2403 526397.835 208121.5836 181328.3202 166436.0068 180375.7634 189445.4115 247868.0797 0.728251903 0.750243754 1.100449241 2.12370159 0.839646573 0.731551721 0.67147011 0.727708721 0.764299347 1 17.91921297 -5.974932223 24.99881463 0.758636384 1.182623642 0.209838245 0.36788081 368.2157389 367200.9732 0.122723721 0.139150795 1.06E-06 5.974932223 0.423987258 GGLLTSEEDSGFSTS(ph)PK ddPTM_HeLa_A485_30min_R1 2 GGLLTSEEDSGFSTSPK 17 0 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 GGLLTSEEDSGFST(0.001)S(0.999)PK;GGLLTSEEDSGFST(0.189)S(0.811)PK ; 403.8 4.23E-153 327860000 447302 394023 311896 749262 445885 419172 583163 470855 337571 924350 TRUE FALSE FALSE 546802.7867 440100.5623 427279.3095 790192.2858 401491.1238 441119.1978 458565.461 355377.073 405318.4033 693926.5564 0.787983659 0.634217783 0.6157414 1.138726107 0.578578698 0.635685713 0.660827082 0.512124907 0.584094094 1 19.40442345 GGLLTSEEDSGFSTS(ph)PK ddPTM_HeLa_A486_30min_R1 3 GGLLTSEEDSGFSTSPK 17 0 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 GGLLTSEEDSGFST(0.023)S(0.977)PK;GGLLTSEEDSGFSTS(1)PK;GGLLTSEEDSGFST(0.018)S(0.982)PK ;; 427.71 1.15E-172 680870000 1151100 1249870 636070 702000 885160 1259700 1574560 1359770 988520 2275950 TRUE FALSE FALSE 1070413.834 1150825.749 882373.3385 1634291.477 774134.979 1104291.022 1180588.434 1050180.055 1074205.71 1706037.306 0.62742698 0.674560717 0.517206356 0.95794592 0.453762046 0.647284217 0.692006224 0.615566876 0.629649601 1 20.70221776 -10.7580502 2.65763727 1.080258073 0.647192915 0.420412886 0.1246336 34773043.68 27217297.62 18295730.9 0.03117249 1.75E-11 10.7580502 -0.433065158 GGLLTSEEDSGFSTS(ph)PKDNSLPK ddPTM_HeLa_A485_30min_R1 1 GGLLTSEEDSGFSTSPKDNSLPK 23 1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 GGLLT(0.004)S(0.004)EEDS(0.018)GFS(0.066)T(0.224)S(0.684)PKDNSLPK 61.417 0.0094351 253000000 71597 74415 41194 110950 108960 105470 155460 185200 80041 165460 TRUE FALSE FALSE 87523.50564 83117.18693 56433.37483 117010.9176 98111.55982 110992.2461 122244.701 139779.4096 96104.49452 124213.8671 0.704619442 0.669145796 0.454324273 0.942011712 0.789859958 0.893557609 0.984146971 1.125312438 0.773701816 1 16.92246672 -5.279375431 24.91589529 0.929943708 0.615341438 0.626816977 0.113274624 498.6872803 692751.0837 0.032636047 0.048520312 5.26E-06 5.279375431 -0.31460227 GGLLTSEEDSGFSTS(ph)PKDNSLPK ddPTM_HeLa_A486_30min_R1 2 GGLLTSEEDSGFSTSPKDNSLPK 23 1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 GGLLTSEEDS(0.004)GFS(0.188)T(0.188)S(0.62)PKDNSLPK;GGLLTSEEDSGFST(0.015)S(0.985)PKDNSLPK ; 207.55 2.55E-29 538660000 603650 535460 284250 555760 656800 708750 1210960 1073690 413620 1314370 TRUE FALSE FALSE 561337.2523 493028.1995 394319.2125 1293837.367 574418.0196 621311.631 907964.9998 829234.2255 449472.9146 985243.1969 0.569744865 0.500412691 0.400225258 1.31321624 0.583021554 0.63061753 0.921564343 0.841654353 0.456205043 1 19.91012036 GGLNT(ph)PLHESDFSGVT(ph)PQR ddPTM_HeLa_A485_30min_R1 1 GGLNTPLHESDFSGVTPQR 19 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 2 0 GGLNT(1)PLHES(0.007)DFS(0.287)GVT(0.706)PQR 104.83 4.83E-05 66444000 74685 124070 165660 42736 163220 71234 107510 68651 113150 86109 TRUE FALSE FALSE 91298.42059 138578.9072 226944.5277 45070.55947 146969.2437 74963.70209 84539.61022 51814.23461 135858.1671 64643.61102 1.412334787 2.1437371 3.510703132 0.697215993 2.273530847 1.159645956 1.307779824 0.801536823 2.101648794 1 15.98022017 -5.28192538 24.93179666 1.356940383 2.334406545 0.323081231 0.676567268 917.944427 1117151.268 0.187041644 0.277796255 5.22E-06 5.28192538 0.977466162 GGLNT(ph)PLHESDFSGVT(ph)PQR ddPTM_HeLa_A486_30min_R1 2 GGLNTPLHESDFSGVTPQR 19 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 2 0 GGLNT(1)PLHESDFS(0.005)GVT(0.995)PQR;GGLNT(1)PLHESDFS(0.007)GVT(0.993)PQR ; 179.17 3.38E-18 152080000 247765 271710 322670 14335.5 327920 175196 184174 177358 287850 77604 TRUE FALSE FALSE 230397.953 250178.71 447616.4654 33373.76848 286789.2159 153582.0988 138091.7172 136977.4551 312801.0698 58171.45328 3.960670397 4.300712737 7.694778799 0.573713851 4.930067923 2.640162659 2.373874287 2.354719495 5.377226322 1 15.82802373 -5.264036202 24.99998455 2.877004989 5.216919756 0.325358627 1.686234817 284.5840939 2739740.561 0.452719506 0.707886255 5.44E-06 5.264036202 2.339914767 GGLNTPLHESDFSGVT(ph)PQR ddPTM_HeLa_A485_30min_R1 1 GGLNTPLHESDFSGVTPQR 19 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 GGLNTPLHESDFS(0.019)GVT(0.981)PQR 78.707 0.0037574 232300000 62183 153200 188950 40375 224080 131130 127840 196170 135070 60844 TRUE FALSE FALSE 76015.39382 171115.4073 258850.4679 42580.58402 201769.8084 137995.764 100525.9396 148058.9999 162177.3101 45676.71055 1.664204644 3.746228773 5.667012023 0.932216517 4.417345426 3.021140585 2.200813903 3.241454959 3.550547054 1 15.47917114 -10.73559137 2.689764925 0.573687012 3.192620708 0.202333956 1.285227995 152546249.1 132683777.6 437240267.1 0.309419213 1.84E-11 10.73559137 2.618933696 GGLNTPLHESDFSGVT(ph)PQR ddPTM_HeLa_A486_30min_R1 1 GGLNTPLHESDFSGVTPQR 19 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 GGLNTPLHESDFS(0.001)GVT(0.999)PQR 174.62 7.42E-13 173410000 172130 210160 258870 42332 284690 133900 163520 177220 213960 93210 TRUE FALSE FALSE 160064.5759 193506.1562 359111.3968 98551.03534 248981.5256 117380.7794 122605.5665 136870.8747 232506.2251 69869.6093 2.290904121 2.769532535 5.139736723 1.410499305 3.563516786 1.679997649 1.754776757 1.958947188 3.327716118 1 16.09237745 -6.039200558 1.553765286 2.014193679 3.143463842 0.174620236 1.069459598 0.706413361 3.461156092 0.427599497 0.461170652 9.14E-07 6.039200558 1.129270163 GGLRPGS(ph)LDAEIDLLSSTLAELNGGR ddPTM_HeLa_A485_30min_R1 4 GGLRPGSLDAEIDLLSSTLAELNGGR 26 1 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 1 0 GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR ;;; 302.59 9.61E-91 5759318200 430051.7 581403.4 520389.8 317217.6 629663.3 453310.3 637349.3 693054.3 564478.8 361966.8 TRUE FALSE FALSE 525715.217 649393.4701 712903.6422 334546.3943 566971.811 477044.9264 501174.4154 523081.6463 677764.5175 271735.1383 1.934660421 2.389803079 2.623523946 1.231148818 2.086486917 1.75555112 1.844348944 1.924968738 2.494210067 1 18.05184161 -5.239148731 24.99846005 1.817562404 2.323376506 0.256414395 0.424754306 1188.365202 1332723.093 0.11071713 0.191578833 5.77E-06 5.239148731 0.505814102 GGLRPGS(ph)LDAEIDLLSSTLAELNGGR ddPTM_HeLa_A486_30min_R1 3 GGLRPGSLDAEIDLLSSTLAELNGGR 26 1 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 1 0 GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR ;; 334.85 6.40E-124 5116861000 1082861 1216848.3 963170.7 543320.1 1398997 948959.9 1204581.1 1426145.8 765576.4 960393.9 TRUE FALSE FALSE 1006958.036 1120420.809 1336136.19 1264876.651 1223521.751 831886.8759 903182.168 1101443.534 831937.1788 719905.0163 1.398737351 1.556345328 1.855989553 1.757004913 1.699559974 1.155550881 1.254585185 1.529984524 1.155620755 1 19.45744705 -6.255928305 24.96290365 1.254487105 1.66512508 0.616543672 0.170022897 338.33183 1532505.515 0.059088751 0.057469457 5.55E-07 6.255928305 0.410637975 GGLS(ph)PANDTGAK ddPTM_HeLa_A485_30min_R1 2 GGLSPANDTGAK 12 0 P30419;B7Z8J4;K7EN42 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GGLS(1)PANDTGAK;GGLS(1)PANDTGAK ; 174.24 7.55E-11 14129600000 8251600 6466900 6620500 11362800 10045000 7155700 10427000 8458100 8302200 14946900 TRUE FALSE FALSE 10087139.95 7223147.7 9069698.452 11983520.99 9044884.53 7530361.387 8199186.269 6383737.713 9968375.388 11220912.91 0.898958938 0.643721929 0.808285255 1.067963105 0.806073856 0.6711006 0.730705811 0.568914291 0.888374722 1 23.41968672 -6.007018882 24.99326933 0.74189337 0.848926971 0.046790665 0.147436509 806.5380305 2871982.174 0.046697131 0.050947794 9.84E-07 6.007018882 0.107033601 GGLS(ph)PANDTGAK ddPTM_HeLa_A486_30min_R1 4 GGLSPANDTGAK 12 0 P30419;B7Z8J4;K7EN42 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK ;;; 205.27 3.31E-17 42910900000 39323600 46362400 27309900 16079130 41417400 46046300 50325700 48941400 35824200 52783800 TRUE FALSE FALSE 36567218.71 42688474.58 37885024.66 37433027.23 36222443.49 40365575.67 37733677.57 37798511.6 38929470.5 39566392.92 0.924198948 1.078907412 0.957505142 0.94608137 0.915485108 1.020198524 0.953679999 0.955318613 0.983902439 1 25.23777221 GGLS(ph)PANDTGAKK ddPTM_HeLa_A485_30min_R1 4 GGLSPANDTGAKK 13 1 P30419;B7Z8J4;K7EN42 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GGLS(1)PANDTGAKK;GGLS(0.997)PANDT(0.003)GAKK;GGLS(1)PANDTGAKK;GGLS(1)PANDTGAKK ;;; 143.93 2.70E-07 1296770000 1785335 1587134 1182821 2251057 2160054 2145243 3040840 2832460 1612945 3175040 TRUE FALSE FALSE 2182476.611 1772735.515 1620395.709 2374026.544 1944991.439 2257564.606 2391139.693 2137794.744 1936648.267 2383560.96 0.915637002 0.743734079 0.679821383 0.995999928 0.81600239 0.947139446 1.003179584 0.896891156 0.812502092 1 21.18468709 -5.266364104 24.99186039 0.919931514 0.776131147 0.37675547 0.085163442 431.5040235 2189786.992 0.023876892 0.036697902 5.42E-06 5.266364104 -0.143800366 GGLS(ph)PANDTGAKK ddPTM_HeLa_A486_30min_R1 4 GGLSPANDTGAKK 13 1 P30419;B7Z8J4;K7EN42 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GGLS(1)PANDTGAKK;GGLS(1)PANDTGAKK;GGLS(1)PANDTGAKK;GGLS(1)PANDTGAKK ;;; 132.65 4.47E-05 3172840000 4467360 3573750 1939255 1962705 3995140 3968120 5253720 5254840 2787433 6094610 TRUE FALSE FALSE 4154221.133 3290553.035 2690186.471 4569276.43 3494032.288 3478573.699 3939183.688 4058427.644 3029049.937 4568479.987 0.909322389 0.720273055 0.588858106 1.000174334 0.76481287 0.761429121 0.862252587 0.888354038 0.663032331 1 22.1232828 -10.46849046 3.105169769 1.004551264 0.795931782 0.217011226 0.116592285 66748709.73 86704965.96 2661728.354 0.028834671 3.40E-11 10.46849046 -0.208619481 GGLT(ph)SPIFCSTKPK ddPTM_HeLa_A485_30min_R1 1 GGLTSPIFCSTKPK 14 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GGLT(0.5)S(0.5)PIFCSTKPK 65.716 0.018942 107530000 273510 287790 203230 352310 375420 355570 444230 507700 253970 497620 TRUE FALSE FALSE 334351.3559 321444.5371 278413.2341 371555.8032 338041.8666 374187.0954 349316.6315 383185.779 304939.4494 373572.492 0.895010642 0.860460938 0.74527231 0.994601613 0.90488961 1.001645205 0.935070539 1.025733391 0.816279185 1 18.5110287 -5.27740826 24.96579699 0.954249892 0.836269253 0.402293241 0.067256214 748.8982904 1170828.018 0.018016487 0.02682 5.28E-06 5.27740826 -0.117980639 GGLT(ph)SPIFCSTKPK ddPTM_HeLa_A486_30min_R1 1 GGLTSPIFCSTKPK 14 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GGLT(0.555)S(0.444)PIFCSTKPK 63.134 0.026304 241620000 276030 259750 141980 155460 274430 278620 334220 370290 224440 389660 TRUE FALSE FALSE 256681.7224 239166.464 196958.4584 361918.7365 240008.4304 244246.6972 250594.621 285983.0504 243894.6399 292086.5997 0.878786369 0.818820392 0.674315284 1.239080248 0.821702983 0.836213292 0.857946312 0.979103631 0.835007974 1 18.15603665 -11.16274469 0.015955873 1.95502306 4.24E-06 0.058796218 0.138922154 9737.345292 20.63135391 1446.675917 1099.786077 6.87E-12 11.16274469 -1.955018824 GGLTS(ph)PIFCSTKPK ddPTM_HeLa_A485_30min_R1 1 GGLTSPIFCSTKPK 14 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GGLT(0.147)S(0.766)PIFCS(0.038)T(0.049)KPK 52.172 0.023572 133260000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GGLTS(ph)PIFCSTKPK ddPTM_HeLa_A486_30min_R1 1 GGLTSPIFCSTKPK 14 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GGLT(0.026)S(0.973)PIFCSTKPK 81.428 0.0020237 203150000 371100 370460 196010 200380 402160 392280 538770 507580 304930 511070 TRUE FALSE FALSE 345087.8064 341103.4004 271910.3213 466494.7666 351717.3428 343884.482 403964.0475 392015.1144 331361.5779 383094.7455 0.900789714 0.890389139 0.709773038 1.21770077 0.918094928 0.897648652 1.054475563 1.02328502 0.864959861 1 18.54734171 -5.236048418 24.99916278 0.992583325 0.839324516 0.336505386 0.104653802 949.3640463 934713.6414 0.028018578 0.048503855 5.81E-06 5.236048418 -0.153258809 GGLVS(ph)DAYGEDDFSR ddPTM_HeLa_A485_30min_R1 1 GGLVSDAYGEDDFSR 15 0 J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3;J3QQJ0;Q9UHR5-2;Q9UHR5 J3KS14 SAP30BP SAP30-binding protein 1 0 GGLVS(1)DAYGEDDFSR 115.91 5.22E-05 0 58276 74120 82427 64770 112400 71060 94065 92401 79269 93912 TRUE FALSE FALSE 71239.29515 82787.68924 112920.1774 68308.22109 101209.0613 74780.59172 73967.24431 69739.50987 95177.5612 70501.46672 1.010465434 1.174269034 1.601671322 0.96889078 1.435559656 1.060695546 1.049158943 0.989192326 1.350008243 1 16.10536565 GGLVS(ph)DAYGEDDFSR ddPTM_HeLa_A486_30min_R1 3 GGLVSDAYGEDDFSR 15 0 J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3;J3QQJ0;Q9UHR5-2;Q9UHR5 J3KS14 SAP30BP SAP30-binding protein 1 0 GGLVS(1)DAYGEDDFSR;GGLVS(1)DAYGEDDFSR;GGLVS(1)DAYGEDDFSR ;; 205.28 7.33E-23 275080000 553405 685957 499424 182024 725720 652840 728820 735950 543528 647600 TRUE FALSE FALSE 514614.1673 631599.2691 692814.3478 423761.071 634693.4305 572299.2384 546461.5273 568390.2507 590641.4447 485436.7448 1.060105509 1.301094892 1.427197993 0.872948073 1.307468867 1.178936791 1.12571109 1.170884274 1.216721748 1 18.88892379 -13.82155677 0.247546242 1.06E-13 1.204419989 0.125643568 0.143503445 346.3816473 3.740475957 174.8861346 0.209750215 1.51E-14 13.82155677 1.204419989 GGNFGFGDSR ddPTM_HeLa_A485_30min_R1 2 GGNFGFGDSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 140.88 0.0015752 148599000 182828 278200 294450 179976 302740 261970 292340 328640 241860 253600 FALSE FALSE TRUE 223497.4579 310733.07 403379.3081 189807.6332 272598.1426 275686.3441 229879.1708 248040.5247 290399.0835 190382.1872 1.173941014 1.632154114 2.118787026 0.996982102 1.43184689 1.448067953 1.20746155 1.302855737 1.525347974 1 17.53853898 -5.28137892 24.99738905 1.296996642 1.640680195 0.279108465 0.269429503 1096.84451 1375066.817 0.075617043 0.112317153 5.23E-06 5.28137892 0.343683553 GGNFGFGDSR ddPTM_HeLa_A486_30min_R1 1 GGNFGFGDSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 112.01 0.028605 154280000 331790 384480 344830 127120 511900 325250 337450 372840 326540 409180 FALSE FALSE TRUE 308533.2344 354012.4045 478357.4109 295941.7843 447692.7287 285123.9619 253016.4408 287952.471 354844.7501 306718.6647 1.005916072 1.154192572 1.559596679 0.964863956 1.459620102 0.929594429 0.82491374 0.938816265 1.156906282 1 18.22655644 -6.295714981 24.70370936 0.95715132 1.22840123 0.323790396 0.186529217 634.3240151 457179.0163 0.064532345 0.056915079 5.06E-07 6.295714981 0.27124991 GGNLPPVS(ph)PNDSGAK ddPTM_HeLa_A485_30min_R1 2 GGNLPPVSPNDSGAK 15 0 Q9UK61;Q9UK61-3;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61 FAM208A Protein FAM208A 1 0 GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK ; 199.65 2.90E-25 778620000 1286330 1345300 1052800 1916960 1746080 1548500 2247000 2580800 1356980 3097800 TRUE FALSE FALSE 1572469.671 1502621.132 1442274.531 2021678.671 1572234.144 1629577.066 1766910.094 1947854.753 1629313.439 2325575.471 0.676163681 0.646128733 0.620179628 0.869324043 0.676062404 0.700719923 0.759773276 0.837579678 0.700606564 1 21.14915633 -14 0.131043498 1.937593979 0.607911303 0.6120711 0.070442886 96.81452969 0.796890295 23.76654782 0.526073983 1.00E-14 14 -1.329682676 GGNLPPVS(ph)PNDSGAK ddPTM_HeLa_A486_30min_R1 4 GGNLPPVSPNDSGAK 15 0 Q9UK61;Q9UK61-3;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61 FAM208A Protein FAM208A 1 0 GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK;GGNLPPVS(0.999)PNDS(0.001)GAK;GGNLPPVS(1)PNDSGAK ;;; 199.65 1.34E-16 1157450000 1112050 1039790 736570 432385 1086730 1087100 1435260 1379220 943800 1546920 TRUE FALSE FALSE 1034101.038 957393.2535 1021789.63 1006614.132 950422.19 952984.6548 1076142.767 1065201.714 1025609.344 1159561.163 0.891803788 0.825651362 0.881186489 0.868099212 0.81963955 0.821849407 0.928060374 0.918624863 0.884480592 1 20.14514749 -8.165637309 0.571950359 1.000449939 0.852541367 0.613162065 0.033103139 0.749388612 0.550916427 0.03904428 0.016253225 6.83E-09 8.165637309 -0.147908572 GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR ddPTM_HeLa_A485_30min_R1 1 GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR 38 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 298.96 6.35E-117 90344000 8313.4 13491 19697 3902.4 12821 8792.3 11500 15848 11528 11293 FALSE FALSE TRUE 10162.68715 15068.65509 26983.73996 4115.578231 11544.49622 9252.651233 9042.931054 11961.25315 13841.56386 8477.862932 1.198732184 1.777411974 3.182846925 0.485449961 1.361722443 1.091389576 1.066652189 1.410880696 1.632671343 1 13.04948493 -5.283065289 24.99986529 1.169872705 2.025438912 0.370028022 0.539234188 877.9695241 1014943.501 0.152938262 0.227079647 5.21E-06 5.283065289 0.855566207 GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR ddPTM_HeLa_A486_30min_R1 2 GGNVGINSFGFGGSNVHIILRPNTQPPPAPAPHATLPR 38 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ; ; 287.76 1.96E-116 233530000 30159 35424 39837 3051.7 45942 22793 26829 33510 35083 19411.3 FALSE FALSE TRUE 28045.00984 32616.87323 55262.95327 7104.511824 40179.52597 19981.0314 20116.10043 25880.50452 38124.02269 14550.58413 1.927414706 2.241619507 3.797988642 0.488262997 2.761368588 1.373211633 1.382494355 1.778657426 2.620102557 1 13.82878945 -5.260844851 24.99998654 1.687834395 2.614268718 0.262150248 0.783963401 79.61823711 3347889.73 0.210309176 0.33804085 5.48E-06 5.260844851 0.926434323 GGPAS(ph)PGGLQGLETR ddPTM_HeLa_A485_30min_R1 6 GGPASPGGLQGLETR 15 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR ;;;;; 289.13 7.66E-60 4410750000 1269027 1652090 1933120 1264490 2172150 1605120 1791850 1886350 1678170 1747010 TRUE FALSE FALSE 1551317.678 1845287.554 2648261.532 1333565.887 1955883.119 1689161.601 1409006.609 1423719.705 2014963.326 1311512.558 1.182846225 1.406991906 2.019242222 1.016815187 1.491318636 1.287949239 1.074337108 1.085555526 1.536366017 1 20.32280019 -6.050114272 1.249950516 1.187207919 1.473004752 0.141654936 0.278121923 0.886881214 2.87727468 0.125930318 0.136991155 8.91E-07 6.050114272 0.285796833 GGPAS(ph)PGGLQGLETR ddPTM_HeLa_A486_30min_R1 6 GGPASPGGLQGLETR 15 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR ;;;;; 181.81 9.19E-18 4554900000 1791210 2523560 2429660 619910 3057690 2019490 2195230 2497010 2057140 1811750 TRUE FALSE FALSE 1665655.429 2323583.915 3370489.421 1443181.809 2674166.008 1770345.856 1645960.235 1928495.332 2235454.552 1358076.007 1.226481743 1.710938049 2.481812065 1.062666449 1.9690842 1.303569054 1.211979467 1.420020177 1.646045243 1 20.37313279 -6.289389302 23.98524043 1.336052501 1.700464697 0.183226509 0.393286538 819.295709 703075.7309 0.137070772 0.120917311 5.14E-07 6.289389302 0.364412196 GGPAS(ph)PGGLQGLETRR ddPTM_HeLa_A485_30min_R1 1 GGPASPGGLQGLETRR 16 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 GGPAS(1)PGGLQGLETRR 54.103 0.014058 0 23002 37111 28629 27364 36849 34434 36096 46124 29408 29770 TRUE FALSE FALSE 28118.71554 41450.80863 39220.05845 28858.82603 33180.18418 36236.91099 28383.79472 34812.01668 35309.91585 22348.88688 1.25817074 1.854714683 1.75489986 1.291286953 1.48464594 1.621419053 1.270031697 1.557662217 1.579940695 1 14.44791536 -11.83711703 0.319369658 5.38E-12 1.554778787 0.38868649 0.193060656 71.47838956 2.249545255 49.0195564 0.180162039 1.46E-12 11.83711703 1.554778787 GGPASVPS(ph)SSPGTSVK ddPTM_HeLa_A486_30min_R1 1 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.528)S(0.333)S(0.136)PGT(0.003)SVK 193.06 2.96E-18 260490000 617220 622790 392800 251330 652270 660770 661750 706330 477720 738390 TRUE FALSE FALSE 573956.0653 573437.8522 544902.6795 585108.9415 570456.2144 579250.9156 496173.1507 545514.0781 519129.1542 553492.3379 1.036972016 1.036035755 0.984480981 1.057122026 1.030648801 1.046538273 0.896440866 0.9855856 0.937915701 1 19.07820382 -6.740357693 24.99998391 0.953784323 1.031076429 0.590998225 0.031361473 158.3100738 187733.9093 0.011373741 0.008800965 1.82E-07 6.740357693 0.077292106 GGPASVPSS(ph)SPGTSVK ddPTM_HeLa_A485_30min_R1 1 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.048)S(0.787)S(0.164)PGTSVK 291.66 2.12E-67 267300000 499510 507030 469540 630760 668120 544950 717720 668030 537780 812540 TRUE FALSE FALSE 610624.2762 566322.7479 643242.3852 665216.8216 601599.6269 573482.7393 564373.2588 504194.5951 645707.5132 609988.7317 1.001041896 0.928415098 1.054515193 1.090539525 0.986247115 0.940153005 0.925219155 0.826563785 1.058556461 1 19.21842307 -6.132474692 4.02244058 0.937851215 1.016891845 0.170935373 0.067896561 0.3735757 10.33983033 0.023358235 0.023493648 7.37E-07 6.132474692 0.07904063 GGPASVPSS(ph)SPGTSVK ddPTM_HeLa_A486_30min_R1 2 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.042)S(0.393)S(0.393)PGT(0.143)S(0.028)VK;GGPASVPS(0.324)S(0.563)S(0.113)PGTSVK ; 294.06 1.81E-67 432210000 1297550 1386480 889780 497640 1376050 1384030 1520320 1502540 1002660 1596810 TRUE FALSE FALSE 1206598.446 1276610.275 1234326.645 1158531.069 1203452.978 1213282.45 1139919.856 1160444.442 1089571.376 1196958.383 1.0080538 1.066545248 1.03121935 0.967895865 1.005425916 1.013637958 0.952347109 0.969494394 0.910283425 1 20.19094156 -5.903266907 0.657297286 0.955240346 1.041187718 0.43493908 0.031356467 0.752433557 0.71248835 0.021830923 0.03434261 1.25E-06 5.903266907 0.085947372 GGPASVPSSS(ph)PGTSVK ddPTM_HeLa_A485_30min_R1 1 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.01)S(0.223)S(0.766)PGT(0.001)SVK 252.01 6.61E-43 244230000 470130 481700 419410 590740 672640 523000 651750 652980 453730 788240 TRUE FALSE FALSE 574708.7966 538030.6248 574567.2121 623010.6304 605669.5998 550383.4713 512498.2882 492835.6312 544789.4491 591746.2745 0.971208137 0.9092252 0.970968871 1.052834056 1.023529215 0.930100442 0.866077761 0.832849572 0.920647028 1 19.17461919 -6.497133394 5.571848796 0.891505924 0.983953453 0.326779759 0.053808357 0.199664259 19.02571984 0.02073863 0.017419903 3.18E-07 6.497133394 0.09244753 GGPASVPSSS(ph)PGTSVK ddPTM_HeLa_A486_30min_R1 1 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.017)S(0.139)S(0.719)PGT(0.108)S(0.017)VK 214.45 2.58E-26 243340000 323080 348010 219790 125490 362000 337490 397260 392100 268070 426120 TRUE FALSE FALSE 300433.7604 320432.4202 304898.5742 292147.0619 316594.5845 295853.9151 297861.3462 302827.3895 291306.5234 319416.7784 0.940569753 1.003179676 0.954547772 0.914626537 0.991164541 0.926231604 0.932516281 0.948063502 0.911995058 1 18.28508057 -6.304769365 24.99867302 0.939812449 0.960256665 0.060823286 0.031626034 1213.932662 700359.6588 0.010785972 0.009512524 4.96E-07 6.304769365 0.020444217 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(ph)PGK ddPTM_HeLa_A485_30min_R1 1 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGK 35 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK 102.01 7.92E-05 39868000 21448 14452 11567 35610 23058 14114 23108 14986 16857 47447 TRUE FALSE FALSE 26219.03361 16142.03568 15846.11464 37555.28413 20762.26456 14852.98722 18170.78702 11310.66 20240.04528 35619.3361 0.736089902 0.453181823 0.444873947 1.054351042 0.582893081 0.416992253 0.510138285 0.317542696 0.568231963 1 15.12037301 -9.967023312 5.340853864 1.000001339 0.559789944 0.307913292 0.195547578 272491363.1 39.34850227 4486.161395 0.049402955 1.08E-10 9.967023312 -0.440211394 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(ph)PGK ddPTM_HeLa_A486_30min_R1 1 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGK 35 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGK 138.8 4.62E-07 54105000 20786 23989 11871 9587.9 17392 23564 26263 21777 17179 32703 TRUE FALSE FALSE 19329.00874 22088.02427 16467.76912 22321.11575 15210.53319 20656.91326 19691.71962 16818.85249 18668.08955 24513.95594 0.788489985 0.901038752 0.67177118 0.910547274 0.620484642 0.842659313 0.803286082 0.686092956 0.761529049 1 14.5813157 -9.949583674 3.993771246 1.000013602 0.776281703 0.353527342 0.090786924 113943079.7 228366497.2 22841.04579 0.021479008 1.12E-10 9.949583674 -0.223731899 GGPGAAPGGAS(ph)PASSSSAASSPSSGR ddPTM_HeLa_A486_30min_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.911)PAS(0.074)S(0.011)S(0.003)SAASSPSSGR 136.68 2.77E-06 274760000 136390 174480 154700 48466 187620 159080 150580 157230 155210 153390 TRUE FALSE FALSE 126829.7653 160653.5694 214603.983 112831.2973 164086.9501 139454.327 112903.2913 121432.1613 168663.7278 114980.1456 1.103057964 1.397228787 1.866443827 0.981311136 1.427089427 1.212855718 0.981937279 1.056114172 1.466894366 1 16.81102524 -5.965111992 1.309533855 1.137390691 1.405286149 0.141378906 0.253289467 0.832107467 2.970040963 0.108809896 0.12718441 1.08E-06 5.965111992 0.267895458 GGPGAAPGGASPAS(ph)SSSAASSPSSGR ddPTM_HeLa_A486_30min_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.009)PAS(0.472)S(0.472)S(0.014)S(0.002)AAS(0.014)S(0.014)PS(0.002)S(0.002)GR 217.18 5.15E-38 234890000 18335 19676 19462 5612.9 21727 17337 17159 17814 18076 16799 TRUE FALSE FALSE 17049.81118 18116.8021 26998.20761 13067.11486 19001.79706 15198.13721 12865.63671 13758.14108 19642.84223 12592.42106 1.353974038 1.438706824 2.144004516 1.037696786 1.508986793 1.206927337 1.021696833 1.092573145 1.559894014 1 13.62026807 -5.303254328 24.99877157 1.213062857 1.624877534 0.363848659 0.266969994 541.3544763 323643.791 0.074909946 0.11111036 4.97E-06 5.303254328 0.411814678 GGPGAAPGGASPASS(ph)SSAASSPSSGR ddPTM_HeLa_A485_30min_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.048)PAS(0.369)S(0.45)S(0.101)S(0.023)AAS(0.004)S(0.005)PSSGR 99.407 0.0017785 179380000 47670 55182 70596 50804 75609 53783 55469 52730 62089 72225 TRUE FALSE FALSE 58274.02704 61635.05488 96712.39814 53579.29388 68081.10248 56598.99472 43617.59501 39797.88482 74549.69279 54220.6367 1.074757336 1.136745317 1.783682451 0.98817161 1.255630819 1.043864443 0.804446382 0.733998847 1.37493208 1 15.72655443 -6.335003314 3.021753118 0.952406555 1.26139327 0.200222734 0.254889234 0.406306023 7.277925334 0.096891052 0.085766488 4.62E-07 6.335003314 0.308986715 GGPGAAPGGASPASSSSAAS(ph)SPSSGR ddPTM_HeLa_A485_30min_R1 2 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.001)PAS(0.102)S(0.068)S(0.046)S(0.031)AAS(0.649)S(0.102)PSSGR;GGPGAAPGGAS(0.004)PAS(0.026)S(0.164)S(0.01)S(0.008)AAS(0.543)S(0.242)PS(0.001)S(0.001)GR ; 248.46 8.55E-58 196690000 90028 119080 123129 96870 134116 92941 93394 95165 113257 120902 TRUE FALSE FALSE 110054.418 133005.3701 168679.5409 102161.7628 120762.9401 97807.24705 73439.60894 71825.63454 135986.641 90763.35644 1.2125424 1.465408237 1.858454199 1.125583791 1.330525279 1.077607207 0.809132802 0.791350578 1.498254873 1 16.46982234 -5.899539836 1.546968903 1.009661087 1.48249911 0.349304211 0.253499832 0.411245199 2.032561227 0.099199512 0.119928811 1.26E-06 5.899539836 0.472838023 GGPGAAPGGASPASSSSAAS(ph)SPSSGR ddPTM_HeLa_A486_30min_R1 2 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.004)PAS(0.001)S(0.001)S(0.001)S(0.003)AAS(0.889)S(0.101)PSSGR;GGPGAAPGGASPASS(0.001)S(0.001)S(0.003)AAS(0.627)S(0.363)PS(0.002)S(0.002)GR ; 362.25 1.73E-143 248653000 122055 150556 136556 32510 155042 121491 132536 137903 131948 120125 TRUE FALSE FALSE 113499.5748 138625.3942 189434.1403 75684.92296 135595.1867 106502.6756 99374.09098 106505.4973 143385.3589 90044.91812 1.260477295 1.539513802 2.103773808 0.840524091 1.505861624 1.182772752 1.103605768 1.182804089 1.592375915 1 16.45835724 -5.270357177 24.99945243 1.216619892 1.625080866 0.329836288 0.28243434 767.28595 2150948.185 0.078016956 0.117641005 5.37E-06 5.270357177 0.408460974 GGPGGGFRPFVPHIPFDFYLCEMAFPR ddPTM_HeLa_A486_30min_R1 1 GGPGGGFRPFVPHIPFDFYLCEMAFPR 27 1 Q12905;A0A0A0MRL0 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 0 95.123 6.67E-05 11064000 1813.4 4978.4 8382.8 3106.6 10408 7921.3 8723.4 7094.2 6762.8 7937.5 FALSE FALSE TRUE 1686.290024 4583.893453 11628.84466 7232.321799 9102.531589 6944.050544 6540.713053 5479.005525 7349.004949 5949.898336 0.283414931 0.770415425 1.954461069 1.215537038 1.529863382 1.16708726 1.099298288 0.920856999 1.235147987 1 12.5386493 -4.528232591 24.99453528 1.267475909 0.405164822 0.552850496 0.280964623 86.00094584 401498.8706 0.073225981 0.195107067 2.96E-05 4.528232591 -0.862311087 GGPGKLS(ph)PR ddPTM_HeLa_A485_30min_R1 8 GGPGKLSPR 9 1 Q12888;Q12888-2;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR ;;;;;;; 78.903 0.0043419 43351060000 10333630 12460330 11191660 12061660 14353300 14134190 17669110 19360460 11549740 16485390 TRUE FALSE FALSE 12632310.34 13917457.2 15331920.76 12720557.94 12924235.05 14874234.33 13893960.31 14612276.83 13867666.88 12375885.66 1.020719703 1.124562523 1.238854428 1.027850312 1.044307891 1.201872313 1.122663919 1.180705545 1.12053935 1 23.56102844 -6.250078544 24.86170446 1.136294556 1.09778622 0.033088284 0.077194837 2349.731164 5142088.859 0.025740155 0.025507524 5.62E-07 6.250078544 -0.038508337 GGPGKLS(ph)PR ddPTM_HeLa_A486_30min_R1 8 GGPGKLSPR 9 1 Q12888;Q12888-2;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR;GGPGKLS(1)PR ;;;;;;; 104.14 0.0017299 63979720000 18017120 17780780 12375220 6449630 18738190 17501360 20993820 20493350 14044920 21720480 TRUE FALSE FALSE 16754212.93 16371766.24 17167236.6 15015064.59 16387871.48 15342220.14 15740944.19 15827461.57 15262344.97 16281530.43 1.029031822 1.005542219 1.054399442 0.92221457 1.006531392 0.942308231 0.966797578 0.972111414 0.937402355 1 23.95673298 -5.253435465 24.99999421 0.963743551 1.027246267 0.553318873 0.027044809 435.6417738 1360711.212 0.006830003 0.011576075 5.58E-06 5.253435465 0.063502716 GGPGSAVS(ph)PYPTFNPSSDVAALHK ddPTM_HeLa_A485_30min_R1 2 GGPGSAVSPYPTFNPSSDVAALHK 24 0 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 1 0 GGPGS(0.001)AVS(0.999)PYPTFNPSSDVAALHK;GGPGSAVS(1)PYPTFNPSSDVAALHK ; 279.66 3.16E-75 2804100000 876620 939320 829600 897690 1163910 1105550 1356550 1404180 893370 1308160 TRUE FALSE FALSE 1071621.095 1049165.303 1136503.563 946728.5316 1048027.034 1163434.888 1066712.011 1059802.653 1072661.165 982059.7869 1.091197409 1.068331396 1.157265146 0.964023315 1.067172333 1.184688452 1.086198646 1.079163069 1.092256479 1 19.90545133 -10.11063911 4.381020762 0.99998888 1.087580326 0.18560784 0.055178813 6.06E-06 1.23E-06 0.05401757 0.013099522 7.75E-11 10.11063911 0.087591446 GGPGSAVS(ph)PYPTFNPSSDVAALHK ddPTM_HeLa_A486_30min_R1 2 GGPGSAVSPYPTFNPSSDVAALHK 24 0 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 1 0 GGPGSAVS(1)PYPTFNPSSDVAALHK;GGPGSAVS(0.999)PYPT(0.001)FNPSSDVAALHK ; 269.27 2.72E-62 2310300000 624290 729110 577140 215150 791290 720960 821960 827120 637100 797310 TRUE FALSE FALSE 580530.4948 671332.6682 800624.0643 500880.0731 692039.0297 632015.2854 616296.9142 638802.8319 692324.341 597658.3864 0.97134167 1.12327156 1.339601489 0.838070852 1.157917375 1.057485848 1.031185922 1.068842748 1.158394757 1 19.18896157 -5.254811898 24.99914927 1.052130184 1.142591539 0.128374765 0.118440458 1241.871164 4684384.343 0.031833408 0.053492484 5.56E-06 5.254811898 0.090461356 GGPS(ph)PGDVEAIKNAIANASTLAEVER ddPTM_HeLa_A485_30min_R1 2 GGPSPGDVEAIKNAIANASTLAEVER 26 1 P09661;H0YMA0;H0YLR3 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 1 0 GGPS(1)PGDVEAIKNAIANASTLAEVER;GGPS(1)PGDVEAIKNAIANASTLAEVER ; 145.86 2.84E-09 58637000 20065.4 30163 22525.5 14236.8 43735 36050 46497 74981 22918.2 22225.8 TRUE FALSE FALSE 24528.87901 33690.30047 30858.61981 15014.52033 39380.58984 37937.52226 36562.5361 56591.79218 27517.67252 16685.3171 1.470087674 2.019158538 1.849447609 0.899864249 2.360194272 2.273706999 2.191300045 3.391712118 1.649214837 1 14.02629148 -5.824510678 24.99999008 2.272757176 1.613143657 0.149976802 0.634427488 101.9128523 40394.78821 0.189743374 0.215148845 1.50E-06 5.824510678 -0.659613519 GGPS(ph)PGDVEAIKNAIANASTLAEVER ddPTM_HeLa_A486_30min_R1 1 GGPSPGDVEAIKNAIANASTLAEVER 26 1 P09661;H0YMA0;H0YLR3 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 1 0 GGPS(1)PGDVEAIKNAIANASTLAEVER 58.498 0.0131 20805000 17533 17926 12210 9521 24178 15345 24082 21674 12740 20715 TRUE FALSE FALSE 16304.02724 16505.47847 16938.039 22165.36916 21145.36979 13451.88992 18056.42889 16739.30334 13844.31346 15527.82917 1.049987546 1.062961107 1.090818221 1.427460911 1.361772438 0.866308469 1.162843092 1.078019545 0.891580742 1 13.92256853 -6.264384751 24.9925267 1.014819893 1.197791159 0.33442153 0.13945414 383.1353203 3251030.103 0.05263745 0.048445158 5.44E-07 6.264384751 0.182971266 GGPS(ph)PLKSNSDSAR ddPTM_HeLa_A485_30min_R1 1 GGPSPLKSNSDSAR 14 1 A0A5F9ZH94;Q9Y653-5;Q9Y653-4;Q9Y653-2;Q9Y653-3;Q9Y653 A0A5F9ZH94 GPR56 G-protein coupled receptor 56;GPR56 N-terminal fragment;GPR56 C-terminal fragment 1 0 GGPS(0.889)PLKS(0.074)NS(0.032)DS(0.005)AR 48.288 0.028312 257040000 335870 304590 195090 494810 307690 383490 558390 565810 289530 758370 TRUE FALSE FALSE 410583.1228 340209.1509 267261.9094 521840.2174 277055.3032 403568.9434 439085.4149 427044.2103 347636.0153 569322.3158 0.721178692 0.597568621 0.469438668 0.916598916 0.486640512 0.708858466 0.771242234 0.750092168 0.610613717 1 19.11888612 -14 0.20643235 2.54715454 0.621643736 0.374752719 0.128011103 150.4722015 1.4966486 96.2079191 0.277278535 1.00E-14 14 -1.925510805 GGPS(ph)PLKSNSDSAR ddPTM_HeLa_A486_30min_R1 1 GGPSPLKSNSDSAR 14 1 A0A5F9ZH94;Q9Y653-5;Q9Y653-4;Q9Y653-2;Q9Y653-3;Q9Y653 A0A5F9ZH94 GPR56 G-protein coupled receptor 56;GPR56 N-terminal fragment;GPR56 C-terminal fragment 1 0 GGPS(0.996)PLKS(0.002)NS(0.002)DSAR 50.831 0.025139 121340000 308010 253590 152000 269330 294960 323600 373500 348520 261380 661580 TRUE FALSE FALSE 286420.0896 233494.6048 210858.4707 627013.8512 257963.3664 283677.5221 280046.3495 269169.6041 284036.6289 495916.0618 0.577557598 0.470834931 0.425189839 1.264354796 0.520175462 0.572027292 0.564705141 0.542772507 0.57275142 1 18.91973643 -10.54884367 2.741959367 1.022268661 0.614446085 0.212850551 0.223656031 37299719.13 37629471.3 6132283.898 0.059878579 2.83E-11 10.54884367 -0.407822577 GGQGDPAVPAQQPADPST(ph)PER ddPTM_HeLa_A485_30min_R1 1 GGQGDPAVPAQQPADPSTPER 21 0 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 GGQGDPAVPAQQPADPS(0.173)T(0.827)PER 199.41 1.00E-25 640820000 140320 211170 229090 176410 270880 191850 198990 173690 228130 202450 TRUE FALSE FALSE 171533.6999 235864.4946 313839.9242 186046.8316 243910.2361 201894.9693 156474.1609 131092.2552 273913.5985 151982.9408 1.128637852 1.551914269 2.064968098 1.224129699 1.604852721 1.328405466 1.029550817 0.862545852 1.802265419 1 17.21354987 -6.491663348 4.502805444 1.162091246 1.528860505 0.190913219 0.330324049 0.334915046 16.11187337 0.123083114 0.102610581 3.22E-07 6.491663348 0.366769259 GGQGDPAVPAQQPADPST(ph)PER ddPTM_HeLa_A486_30min_R1 1 GGQGDPAVPAQQPADPSTPER 21 0 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 GGQGDPAVPAQQPADPS(0.006)T(0.994)PER 249.29 2.92E-46 558930000 267430 252870 234480 64961 287200 232500 266590 251210 245500 255530 TRUE FALSE FALSE 248684.538 232831.6603 325276.9356 151232.4909 251176.698 203816.5139 199886.3623 194014.9669 266780.1377 191543.6248 1.298318011 1.215554214 1.69818722 0.789545938 1.311328938 1.064073597 1.043555287 1.012902241 1.392790483 1 17.54731348 -5.26237177 24.99854461 1.094768739 1.385173237 0.353010973 0.195554797 97.61659722 2617244.035 0.052073338 0.082529957 5.47E-06 5.26237177 0.290404498 GGQGDPAVPTQQPADPST(ph)PEQQNS(ph)PSGSEQFVR ddPTM_HeLa_A486_30min_R1 1 GGQGDPAVPTQQPADPSTPEQQNSPSGSEQFVR 33 0 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 2 0 GGQGDPAVPTQQPADPS(0.116)T(0.932)PEQQNS(0.919)PS(0.032)GS(0.002)EQFVR 137.97 1.25E-06 101960000 55086 65412 62877 19988 74987 53583 64699 66738 53915 52447 TRUE FALSE FALSE 51224.75586 60228.51489 87224.6583 46533.07414 65581.43123 46972.47425 48510.62588 51543.21428 58588.39561 39313.92983 1.302967068 1.531989174 2.21867055 1.183628153 1.668147436 1.194804856 1.233929706 1.311067464 1.490270646 1 15.26275296 -6.016846968 1.575817333 1.267007381 1.626965261 0.232102097 0.285259465 0.590939701 2.983696095 0.11380932 0.124828964 9.62E-07 6.016846968 0.35995788 GGQS(ph)DDDEDEGVPASYHTVSLQLLDLMHTLHTR ddPTM_HeLa_A485_30min_R1 9 GGQSDDDEDEGVPASYHTVSLQLLDLMHTLHTR 33 0 Q92538-3;Q92538-2 Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(0.999)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR ;;;;;;;; 370.69 5.61E-170 3283259000 282173.9 412554.44 470062.7 162269.61 512781 347529.7 436981.7 464519.1 378608.2 310580.2 TRUE FALSE FALSE 344942.5106 460799.093 643958.4537 171133.9879 461726.7232 365725.8177 343616.99 350595.0624 454591.3929 233158.2719 1.479435011 1.976336028 2.761894092 0.733982056 1.98031457 1.568573204 1.473749943 1.503678422 1.949711624 1 17.83095009 -11.40311496 0.146257733 3.45E-10 2.005424916 0.153852109 0.4945922 103.9939145 1.919644327 39.27396104 3.171779032 3.95E-12 11.40311496 2.005424916 GGQS(ph)DDDEDEGVPASYHTVSLQLLDLMHTLHTR ddPTM_HeLa_A486_30min_R1 9 GGQSDDDEDEGVPASYHTVSLQLLDLMHTLHTR 33 0 Q92538-3;Q92538-2 Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQLLDLMHTLHTR ;;;;;;;; 284.47 2.51E-78 2654099000 193250.9 249730.2 294299.3 30475.4 369793.2 188444.9 246370.4 240258.5 216243.3 119110.9 TRUE FALSE FALSE 179705.0099 229940.6695 408259.8706 70948.27134 323410.2887 165196.4842 184725.9201 185556.8844 234987.4434 89284.75536 2.012717727 2.575363157 4.57255966 0.794629173 3.622234136 1.850220494 2.068952525 2.078259425 2.631887632 1 16.44612625 -9.956982605 0.218439755 2.87E-11 2.861326327 0.178750858 0.969200249 28.90475825 1.468689718 20.6593041 2.275668811 1.10E-10 9.956982605 2.861326327 GGQS(ph)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR ddPTM_HeLa_A485_30min_R1 3 GGQSDDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR 37 0 A0A669KBG8;A0A669KB10;Q92538 A0A669KBG8 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR;GGQS(1)DDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTR ;; 139.79 9.39E-08 427480000 20986.7 30220.5 31147.9 3744.1 38214.2 21353.9 28594 34058.1 20138.6 17419.5 TRUE FALSE FALSE 25655.11901 33754.52459 42670.80438 3948.630702 34409.46007 22471.95718 22484.65831 25705.29757 24180.2323 13077.13923 1.961829614 2.581185685 3.263007576 0.301949121 2.631268159 1.71841538 1.719386626 1.965666735 1.849046024 1 13.67475935 -6.70021842 0.08277176 3.83E-11 3.749915514 0.17802866 0.71942055 43.83436178 2.140275176 40.14349804 52.69848838 1.99E-07 6.70021842 3.749915514 GGQVSLTVHGTQQVHS(ph)PPEQSPVQANSSSSK ddPTM_HeLa_A485_30min_R1 3 GGQVSLTVHGTQQVHSPPEQSPVQANSSSSK 31 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 0 GGQVSLTVHGT(0.003)QQVHS(0.997)PPEQSPVQANSSSSK;GGQVSLTVHGTQQVHS(1)PPEQSPVQANSSSSK;GGQVSLTVHGTQQVHS(1)PPEQSPVQANSSSSK ;; 223.92 3.88E-39 1046140000 231088 348478 345510 161019 454318 320645 419625 464719 335115 341207 TRUE FALSE FALSE 282492.7284 389229.4707 473328.5269 169815.0602 409084.5047 337433.4764 329968.6907 350745.9366 402369.5066 256150.3743 1.102839412 1.519535046 1.847854129 0.662950662 1.597048241 1.31732572 1.288183519 1.36929699 1.570833178 1 17.96663147 -10.15374777 4.566534954 0.99995005 1.365582206 0.114379635 0.303817392 198614163 10.62248598 104317.7582 0.070693502 7.02E-11 10.15374777 0.365632156 GGQVSLTVHGTQQVHS(ph)PPEQSPVQANSSSSK ddPTM_HeLa_A486_30min_R1 3 GGQVSLTVHGTQQVHSPPEQSPVQANSSSSK 31 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 0 GGQVSLTVHGTQQVHS(1)PPEQSPVQANSSSSK;GGQVSLTVHGTQQVHS(1)PPEQSPVQANSSSSK;GGQVS(0.009)LT(0.007)VHGT(0.009)QQVHS(0.974)PPEQSPVQANSSSSK ;; 264.59 5.90E-64 812920000 272971 292007 241367 13540.7 343373 247498 287995 298902 250823 159784 TRUE FALSE FALSE 253837.1425 268867.3018 334830.7664 31523.43391 300303.9565 216964.2131 215935.6049 230848.5396 272564.5396 119773.0464 2.119317745 2.244806407 2.795543543 0.263193054 2.50727493 1.81146109 1.802873112 1.927383051 2.275675102 1 16.86994376 -10.89930648 2.670154294 0.483822021 1.95867998 0.170418155 0.642733256 66256449.33 43583983.87 215473896.6 0.159851747 1.26E-11 10.89930648 1.474857959 GGREDMDIS(ph)K ddPTM_HeLa_A485_30min_R1 1 GGREDMDISK 10 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 GGREDMDIS(1)K 56.147 0.0072495 0 304380 224720 236740 447660 357890 263070 361220 295240 283000 573300 TRUE FALSE FALSE 372088.2809 250999.0492 324319.9776 472114.5323 322257.215 276843.9384 284042.3961 222831.9271 339795.5042 430386.8608 0.864543774 0.583194033 0.753554551 1.096953869 0.74876174 0.643244401 0.659969953 0.517747978 0.789511798 1 18.71527451 -5.997627239 24.99920481 0.68895256 0.817325152 0.060572144 0.166855864 176.806585 1862776 0.052468944 0.059141401 1.01E-06 5.997627239 0.128372592 GGREDMDIS(ph)K ddPTM_HeLa_A486_30min_R1 3 GGREDMDISK 10 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 GGREDMDIS(1)K;GGREDMDIS(1)K;GGREDMDIS(1)K ;; 68.164 0.003614 904010000 1294770 1282470 830740 658770 1150840 1478870 1728210 1629580 1055030 1990930 TRUE FALSE FALSE 1204013.309 1180842.407 1152424.776 1533649.852 1006490.916 1296422.055 1295793.579 1258560.207 1146480.85 1492388.169 0.806769535 0.791243479 0.772201763 1.027648091 0.674416306 0.868689582 0.868268461 0.843319609 0.768218935 1 20.5091914 -11.1979984 2.389499793 1.515236945 0.826709253 0.268488286 0.086823141 23169434.64 6299923.492 64207411.87 0.021679472 6.34E-12 11.1979984 -0.688527692 GGREGFES(ph)DTDSEFTFK ddPTM_HeLa_A485_30min_R1 2 GGREGFESDTDSEFTFK 17 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 GGREGFES(0.987)DT(0.013)DSEFTFK;GGREGFES(0.842)DT(0.158)DSEFTFK ; 195.13 8.01E-19 655380000 328590 462560 431060 367110 763240 591800 818590 1076220 479810 572380 TRUE FALSE FALSE 401683.7119 516652.3683 590527.0319 387164.2897 687249.1457 622785.7329 643691.5592 812275.3576 576103.4659 429696.1999 0.934808621 1.202366622 1.374289631 0.90101865 1.599383811 1.449362906 1.49801548 1.890348013 1.340722739 1 18.71295749 -5.774671946 24.99856916 1.508561303 1.129579035 0.330071155 0.244905449 247.3998199 467378.738 0.073093834 0.083364564 1.68E-06 5.774671946 -0.378982268 GGREGFES(ph)DTDSEFTFK ddPTM_HeLa_A486_30min_R1 2 GGREGFESDTDSEFTFK 17 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 GGREGFES(0.95)DT(0.049)DSEFTFK;GGREGFES(0.989)DT(0.011)DSEFTFK ; 111.97 3.25E-06 188180000 383650 382740 355560 214482 610890 401000 554080 627290 302230 453890 TRUE FALSE FALSE 356758.1162 352410.2885 493242.3542 499324.9353 534266.4799 351528.6971 415443.3235 484469.7606 328427.5397 340232.9897 1.04857003 1.035791058 1.449719366 1.46759706 1.570295933 1.033199918 1.221055383 1.423935289 0.965301866 1 18.37616351 -7.77639383 24.9894904 0.982650584 1.284271692 0.291129565 0.186341137 369.819919 617965.685 0.189878595 0.049838459 1.67E-08 7.77639383 0.301621107 GGRPGGFPDHPHR ddPTM_HeLa_A485_30min_R1 4 GGRPGGFPDHPHR 13 1 O00625 O00625 PIR Pirin 0 0 ;;; ;;; 99.844 0.0028073 456126000 326085 545260 607830 289511 558630 469330 496260 550570 473950 415789 FALSE FALSE TRUE 398621.4833 609023.4139 832691.6109 305326.2528 503010.8357 493903.3931 390229.9969 415541.8442 569067.4177 312140.4543 1.277058061 1.951119778 2.667682447 0.978169438 1.611488767 1.58231138 1.250174373 1.331265584 1.823113313 1 18.25183582 -5.280689958 24.9999754 1.396033722 1.963870229 0.318942689 0.398455269 984.898092 1279046.457 0.111734076 0.166020824 5.24E-06 5.280689958 0.567836506 GGRPGGFPDHPHR ddPTM_HeLa_A486_30min_R1 1 GGRPGGFPDHPHR 13 1 O00625 O00625 PIR Pirin 0 0 75.479 0.026992 85318000 89606 114140 149640 23991 158950 79240 74841 93373 95077 75975 FALSE FALSE TRUE 83325.08213 105095.1307 207584.6155 55852.26044 139013.0089 69464.17445 56114.99021 72114.00622 103318.3509 56950.36549 1.463117601 1.845381146 3.645009364 0.980718209 2.44095025 1.219731847 0.98533152 1.266260639 1.814182403 1 15.79741748 -6.276020311 23.75345619 1.256756831 2.088702123 0.263338414 0.683823141 594.1385477 967893.3121 0.238661725 0.211539474 5.30E-07 6.276020311 0.831945291 GGRS(ph)PDEVTLTSIVPTR ddPTM_HeLa_A485_30min_R1 4 GGRSPDEVTLTSIVPTR 17 1 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR ;;; 163.04 3.61E-12 3983890000 632670 907920 925650 748150 989620 859600 1037540 1073100 832210 1155980 TRUE FALSE FALSE 773405.2588 1014093.346 1268086.455 789019.5401 891089.958 904607.3268 815861.1031 809920.5424 999226.9135 867815.4602 0.891209358 1.168558746 1.46123976 0.909201986 1.02681964 1.042395957 0.940132022 0.933286602 1.151427878 1 19.72702876 GGRS(ph)PDEVTLTSIVPTR ddPTM_HeLa_A486_30min_R1 4 GGRSPDEVTLTSIVPTR 17 1 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 GGRS(0.999)PDEVT(0.001)LTSIVPTR;GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR ;;; 186.7 4.54E-18 3654860000 641520 727620 758470 267006 958580 832440 800160 793130 708660 789620 TRUE FALSE FALSE 596552.7608 669960.7413 1052169.897 621603.4617 838345.958 729742.0164 599951.5048 612551.6129 770087.2194 591894.0124 1.007870917 1.131893088 1.777632269 1.050193867 1.416378508 1.232893054 1.013613066 1.034900844 1.301055938 1 19.17497934 -6.60203117 6.033285264 1.091852774 1.287823241 0.144032961 0.218479248 0.417193665 24.71128662 0.084470612 0.065095535 2.50E-07 6.60203117 0.195970467 GGRS(ph)PRPGSSAPEHSPR ddPTM_HeLa_A486_30min_R1 1 GGRSPRPGSSAPEHSPR 17 2 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 GGRS(0.988)PRPGS(0.006)S(0.006)APEHSPR 119.01 2.87E-05 16019000 15523 19377 22313 2316.9 24761 12258 16084 16299 13286 14039 TRUE FALSE FALSE 14434.91786 17841.49595 30953.19116 5393.86029 21655.24449 10745.73259 12059.61308 12588.0735 14437.64118 10523.54302 1.371678515 1.695388703 2.941327944 0.51255174 2.057790275 1.021113571 1.145965105 1.196182073 1.371937298 1 13.36133289 -5.273979977 24.99997769 1.222403012 1.972057503 0.339680047 0.519337908 895.9182648 1786032.342 0.142506462 0.212997785 5.32E-06 5.273979977 0.74965449 GGRSPRPGS(ph)SAPEHSPR ddPTM_HeLa_A486_30min_R1 1 GGRSPRPGSSAPEHSPR 17 2 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 GGRS(0.292)PRPGS(0.354)S(0.354)APEHSPR 52.453 0.018943 15377000 14269 15409 18565 2604.3 21342 10610 13236 13669 14113 10663 TRUE FALSE FALSE 13268.81679 14187.93472 25753.86519 6062.942014 18665.08735 9301.046075 9924.212804 10556.86709 15336.3262 7992.915396 1.660072218 1.775063793 3.22208655 0.758539496 2.335203919 1.163661269 1.241626154 1.320778035 1.918739965 1 12.9645061 -5.28080576 24.9991701 1.428204886 2.174673423 0.299308088 0.577321063 1062.467412 1371488.001 0.158524236 0.235529373 5.24E-06 5.28080576 0.746468537 GGS(ph)AAATSNPHHDNVR ddPTM_HeLa_A486_30min_R1 2 GGSAAATSNPHHDNVR 16 0 Q9GZY8-2;Q9GZY8;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 GGS(1)AAATSNPHHDNVR;GGS(0.997)AAAT(0.002)S(0.001)NPHHDNVR ; 98.175 0.00044857 80131000 39087 36610 55532 9350.5 67386 40112 28775 32051 43858 24503 TRUE FALSE FALSE 36347.20315 33708.89027 77035.4776 21768.43655 58933.81953 35163.38927 21575.19065 24753.68697 47659.64675 18367.28931 1.978909491 1.835267562 4.194166939 1.185174153 3.20862913 1.9144572 1.174652954 1.347704963 2.594811131 1 14.16485111 -6.51451397 23.45246749 1.556308512 2.47720691 0.215158013 0.859639957 284.034382 796361.4329 0.307092026 0.250162761 3.06E-07 6.51451397 0.920898398 GGS(ph)DDSSKDPIDVNYEK ddPTM_HeLa_A485_30min_R1 2 GGSDDSSKDPIDVNYEK 17 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 1 0 GGS(0.996)DDS(0.002)S(0.002)KDPIDVNYEK;GGS(1)DDSSKDPIDVNYEK ; 138.66 1.61E-06 485820000 546810 426780 303290 884760 581150 573490 835660 811810 457270 1216590 TRUE FALSE FALSE 668445.998 476688.2085 415489.5919 933092.1985 523288.6655 603517.0496 657114.4143 612712.3246 549039.8947 913316.5027 0.731888667 0.521931014 0.454923995 1.021652621 0.572954353 0.660797268 0.719481595 0.670865273 0.601149649 1 19.80075538 -11.09042903 2.386261487 1.556449057 0.66145704 0.327196798 0.145516457 20319036.05 6899918.693 61326021.26 0.037858004 8.12E-12 11.09042903 -0.894992017 GGS(ph)DDSSKDPIDVNYEK ddPTM_HeLa_A486_30min_R1 1 GGSDDSSKDPIDVNYEK 17 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 1 0 GGS(0.991)DDS(0.004)S(0.004)KDPIDVNYEK 95.622 0.00031482 160020000 400040 412140 181590 220590 363040 459160 616000 524810 300450 619350 TRUE FALSE FALSE 371999.2618 379480.5254 251906.5111 513544.668 317504.138 402513.5076 461870.2846 405322.2195 326493.2479 464260.7287 0.8012723 0.817386658 0.54259707 1.106155736 0.68389187 0.866998828 0.994851074 0.873048687 0.703254072 1 18.82457572 -5.252059005 24.99971355 0.879307973 0.730115503 0.231329704 0.140211465 1121.501316 2988916.818 0.037224969 0.063392499 5.60E-06 5.252059005 -0.149192469 GGS(ph)DGYGSGR ddPTM_HeLa_A485_30min_R1 3 GGSDGYGSGR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGS(1)DGYGSGR;GGS(1)DGYGSGR;GGS(1)DGYGSGR ;; 182.29 1.42E-09 430223000 397480 601200 530230 491670 585570 581320 636190 751060 584020 657320 TRUE FALSE FALSE 485898.0547 671505.1103 726384.1417 518528.6871 527268.5947 611757.0163 500262.8093 566861.3574 701227.4571 493462.2211 0.984671235 1.360803485 1.47201571 1.050797133 1.068508535 1.239724117 1.013781376 1.148743173 1.421035749 1 18.91258011 -5.293200924 24.99754678 1.13743865 1.28132766 0.128714631 0.163749645 1298.123308 1021670.163 0.046256002 0.068616163 5.09E-06 5.293200924 0.14388901 GGS(ph)DGYGSGR ddPTM_HeLa_A486_30min_R1 3 GGSDGYGSGR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGS(1)DGYGSGR;GGS(1)DGYGSGR;GGS(1)DGYGSGR ;; 186.97 9.64E-10 2306000000 2960280 2761950 3326700 1060027 3161180 3388490 3014420 2912100 3369760 3385010 TRUE FALSE FALSE 2752779.659 2543083.023 4614887.332 2467796.427 2764675.328 2970452.555 2260180.233 2249078.401 3661853.51 2537381.463 1.084889954 1.002247025 1.818759772 0.972576044 1.089578121 1.170676384 0.890753032 0.886377722 1.443162395 1 21.274909 GGS(ph)GGTRGPPSR ddPTM_HeLa_A485_30min_R1 6 GGSGGTRGPPSR 12 1 P38159;P38159-2;H0Y6E7;H3BT71;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GGS(0.758)GGT(0.242)RGPPSR;GGS(0.827)GGT(0.173)RGPPSR;GGS(0.973)GGT(0.027)RGPPSR;GGS(0.986)GGT(0.014)RGPPSR;GGS(0.973)GGT(0.027)RGPPSR;GGS(0.825)GGT(0.175)RGPPSR ;;;;; 87.932 0.0011686 3562858000 174125.6 360634.4 311657.3 149044.5 357300.6 336128.1 374200 489050 273275.6 221178.9 TRUE FALSE FALSE 212859.239 402807.456 426952.3044 157186.4236 321726.4977 353727.2476 294249.1131 369109.7207 328119.5063 166043.0707 1.281951954 2.425921505 2.57133467 0.946660544 1.937608696 2.130334292 1.772125219 2.222975756 1.976110806 1 17.34119799 -10.38603367 8.869842305 0.999996677 1.935353853 0.255970387 0.468895538 3.08E-05 2.13E-06 0.450216451 0.109193138 4.11E-11 10.38603367 0.935357176 GGS(ph)GGTRGPPSR ddPTM_HeLa_A486_30min_R1 4 GGSGGTRGPPSR 12 1 P38159;P38159-2;H0Y6E7;H3BT71;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GGS(0.918)GGT(0.082)RGPPSR;GGS(0.999)GGT(0.001)RGPPSR;GGS(0.75)GGT(0.25)RGPPSR;GGS(0.902)GGT(0.098)RGPPSR ;;; 102.64 0.00038414 2095600000 203463 195554 215305 68900.6 278341 154664 206942 216002 154516 199668 TRUE FALSE FALSE 189201.2944 180057.5888 298676.8621 160404.0788 243428.8764 135583.1282 155162.9228 166823.0599 167909.5713 149669.8332 1.264124442 1.203031934 1.995571557 1.0717195 1.626439151 0.905881468 1.036701381 1.114607108 1.121866496 1 17.19142394 -6.266730833 24.98961397 1.043029862 1.430721265 0.396308605 0.244515937 477.9378325 2257120.184 0.082947675 0.075293649 5.41E-07 6.266730833 0.387691404 GGS(ph)GSHNWGTVK ddPTM_HeLa_A485_30min_R1 6 GGSGSHNWGTVK 12 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGS(0.5)GS(0.5)HNWGTVK;GGS(0.974)GS(0.026)HNWGTVK;GGS(0.975)GS(0.025)HNWGTVK;GGS(0.847)GS(0.151)HNWGT(0.002)VK;GGS(0.967)GS(0.033)HNWGTVK;GGS(0.965)GS(0.035)HNWGTVK ;;;;; 165.78 2.26E-10 1391210000 2086500 2501240 1919920 2020540 2169200 2236840 2322220 2492550 2119860 2639410 TRUE FALSE FALSE 2550634.727 2793738.26 2630178.303 2130916.984 1953226.831 2353957.484 1826058.726 1881248.204 2545296.457 1981453.662 1.28725429 1.409943777 1.327398341 1.075431147 0.985754484 1.187995222 0.921575287 0.949428311 1.284560172 1 20.9181278 -5.260707457 4.409449029 1.050621251 1.3528867 0.595879045 0.107201526 0.13069682 6.693331007 0.029611821 0.04910481 5.49E-06 5.260707457 0.302265449 GGS(ph)GSHNWGTVK ddPTM_HeLa_A486_30min_R1 5 GGSGSHNWGTVK 12 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGS(0.867)GS(0.133)HNWGTVK;GGS(0.963)GS(0.037)HNWGTVK;GGS(0.851)GS(0.149)HNWGTVK;GGS(0.998)GS(0.002)HNWGTVK;GGS(0.954)GS(0.046)HNWGTVK ;;;; 178.23 3.23E-12 2588970000 4578320 4945880 3062010 1232844 3512000 3969890 4274070 4050120 3755990 4461600 TRUE FALSE FALSE 4257403.41 4553950.456 4247702.275 2870123.136 3071492.212 3480125.335 3204652.479 3127996.089 4081562.237 3344386.32 1.272999888 1.361669981 1.270099166 0.858191268 0.918402337 1.040587122 0.958218391 0.935297478 1.220421879 1 21.67331008 -5.159348814 5.886623494 0.985843727 1.315246172 0.701167081 0.093308614 0.122523764 5.879752562 0.025403047 0.04468483 6.93E-06 5.159348814 0.329402445 GGS(ph)GYHS(ph)RS(ph)PAR ddPTM_HeLa_A485_30min_R1 6 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GGS(0.981)GY(0.021)HS(0.999)RS(0.999)PAR;GGS(0.999)GY(0.001)HS(1)RS(1)PAR;GGS(0.999)GY(0.002)HS(1)RS(1)PAR;GGS(0.999)GY(0.001)HS(1)RS(1)PAR;GGS(1)GYHS(1)RS(1)PAR;GGS(0.998)GY(0.002)HS(1)RS(1)PAR ;;;;; 106.36 0.0010328 18482367000 3948037 5438050 5618150 4756672 6383430 5057350 5492960 5673820 5419070 5741370 TRUE FALSE FALSE 4826264.21 6073982.643 7696537.476 5016516.947 5747873.296 5322145.026 4319344.223 4282306.749 6506627.642 4310152.121 1.119743358 1.409226977 1.785676528 1.163883966 1.333566226 1.234792851 1.002132663 0.993539585 1.509605104 1 22.03930736 -6.023123429 1.502480828 1.133084135 1.413152481 0.202765432 0.21884353 0.615544 2.834186508 0.090717664 0.099333047 9.48E-07 6.023123429 0.280068346 GGS(ph)GYHS(ph)RS(ph)PAR ddPTM_HeLa_A486_30min_R1 6 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GGS(0.999)GY(0.001)HS(1)RS(1)PAR;GGS(0.998)GY(0.002)HS(1)RS(1)PAR;GGS(0.998)GY(0.002)HS(1)RS(1)PAR;GGS(0.993)GY(0.007)HS(1)RS(1)PAR;GGS(0.997)GY(0.003)HS(1)RS(1)PAR;GGS(0.996)GY(0.004)HS(1)RS(1)PAR ;;;;; 84.403 0.0067935 9751988000 4960730 6100280 5704540 2370955 7128040 5798880 6142980 6272710 5386320 5769910 TRUE FALSE FALSE 4613008.444 5616871.596 7913490.661 5519703.061 6233974.757 5083473.144 4605941.43 4844550.865 5853210.554 4325086.98 1.066570098 1.298672517 1.829672027 1.276206256 1.44135246 1.175345876 1.064936139 1.120104841 1.353316264 1 22.04429772 -6.321842137 5.476179011 1.142606438 1.396728134 0.266281413 0.198609615 0.311087583 19.51053542 0.072779519 0.064438589 4.77E-07 6.321842137 0.254121696 GGS(ph)GYHS(ph)RS(ph)PARQESSR ddPTM_HeLa_A486_30min_R1 2 GGSGYHSRSPARQESSR 17 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GGS(0.991)GY(0.01)HS(0.997)RS(0.997)PARQES(0.003)S(0.002)R;GGS(0.859)GY(0.145)HS(0.997)RS(0.999)PARQES(0.001)SR ; 78.354 0.0044921 1231630000 476420 508310 1068680 432860 2365270 713090 1222710 1587580 575860 610000 TRUE FALSE FALSE 443025.4182 468029.6644 1482501.516 1007719.956 2068595.781 625116.206 916775.0255 1226122.691 625776.0085 457252.0296 0.968886718 1.023570447 3.242197782 2.203861088 4.523972881 1.367115213 2.004966553 2.681503003 1.368558187 1 18.80263005 -4.733791817 23.26420699 2.391354774 0.996222525 0.216636539 0.978425926 139.0369222 116988.7348 0.242998659 0.642424066 1.85E-05 4.733791817 -1.395132249 GGS(ph)LPK ddPTM_HeLa_A485_30min_R1 4 GGSLPK 6 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 0 GGS(1)LPK;GGS(1)LPK;GGS(1)LPK;GGS(1)LPK ;;; 93.992 0.014352 3518050000 5749200 5487000 3903420 7233600 4698440 4871820 6284700 5837700 4326630 8226200 TRUE FALSE FALSE 7028089.705 6128656.919 5347457.493 7628753.252 4230646.816 5126900.962 4941922.504 4405994.922 5194944.955 6175559.732 1.138049021 0.992405091 0.865906529 1.235313653 0.685062893 0.83019211 0.800238799 0.713456774 0.841210381 1 22.55813847 -5.773891429 24.99976788 0.797718532 1.039523925 0.498106831 0.120027382 185.5834774 372591.4692 0.035657996 0.040707954 1.68E-06 5.773891429 0.241805393 GGS(ph)LPK ddPTM_HeLa_A486_30min_R1 3 GGSLPK 6 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 0 GGS(1)LPK;GGS(1)LPK;GGS(1)LPK ;; 84.227 0.018531 2840350000 3014180 2914880 1576740 1110990 1968980 3015620 3283660 2748100 2086350 4176360 TRUE FALSE FALSE 2802901.547 2683894.293 2187295.955 2586440.866 1722012.168 2643583.465 2462053.537 2122417.621 2267196.498 3130572.272 0.895332004 0.857317468 0.698688854 0.826187879 0.550063061 0.844440963 0.786454783 0.677964741 0.724211518 1 21.57799498 -4.631427902 5.605000219 0.750608828 0.885949814 0.133288922 0.112738182 0.319919317 14.17975239 0.02705192 0.074541374 2.34E-05 4.631427902 0.135340986 GGS(ph)LPKVEAK ddPTM_HeLa_A485_30min_R1 4 GGSLPKVEAK 10 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 0 GGS(1)LPKVEAK;GGS(1)LPKVEAK;GGS(1)LPKVEAK;GGS(1)LPKVEAK ;;; 114.7 0.00025403 4736100000 1859720 1798190 1624450 3251660 3977140 2544970 3969730 4732910 2318790 4576730 TRUE FALSE FALSE 2273408.298 2008472.678 2225401.654 3429289.952 3581161.977 2678220.694 3121564.756 3572156.402 2784149.884 3435835.439 0.661675548 0.584566029 0.647703213 0.998094936 1.042297293 0.779496207 0.908531509 1.03967622 0.810326901 1 21.71222951 -5.241253096 11.63084129 0.937718337 0.626521746 0.728536346 0.086264434 0.511361687 292.2897168 0.023572346 0.040159186 5.74E-06 5.241253096 -0.311196592 GGS(ph)LPKVEAK ddPTM_HeLa_A486_30min_R1 5 GGSLPKVEAK 10 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 0 GGS(1)LPKVEAK;GGS(1)LPKVEAK;GGS(1)LPKVEAK;GGS(1)LPKVEAK;GGS(1)LPKVEAK ;;;; 121.48 9.66E-05 5418030000 4071080 4178120 2748104 3457410 5941450 6053710 8471190 8891600 3284360 6550370 TRUE FALSE FALSE 3785718.315 3847030.555 3812243.466 8049025.208 5196217.939 5306864.81 6351608.663 6867176.782 3569050.969 4910114.716 0.771004047 0.783490973 0.776406191 1.63927437 1.058268134 1.080802612 1.293576429 1.398577667 0.726877308 1 22.2273253 -5.108989754 24.11960446 1.18612263 0.77742978 0.377535034 0.231322047 19.24970507 4241.110953 0.060574667 0.104918497 7.78E-06 5.108989754 -0.40869285 GGS(ph)PAPLPAKVDEATSGLIR ddPTM_HeLa_A485_30min_R1 1 GGSPAPLPAKVDEATSGLIR 20 1 A0A087WWH3;Q9NZM4-2;Q9NZM4 A0A087WWH3 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein 1 0 GGS(0.999)PAPLPAKVDEATSGLIR 42.454 0.031585 49579000 34456 38877 40195 38612 78590 56452 85713 118960 47279 62601 TRUE FALSE FALSE 42120.61833 43423.32697 55064.80315 40721.27579 70765.30365 59407.73943 67399.71734 89784.87348 56767.46163 46995.72279 0.896264933 0.923984661 1.171698186 0.866488978 1.505781792 1.264109496 1.434167055 1.91049032 1.20792826 1 15.52024184 -5.76398172 24.9999858 1.42880992 0.976499478 0.428259761 0.236042936 59.93500497 589369.2655 0.070731517 0.083961025 1.72E-06 5.76398172 -0.452310442 GGS(ph)PDLWK ddPTM_HeLa_A485_30min_R1 2 GGSPDLWK 8 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 GGS(1)PDLWK;GGS(1)PDLWK ; 134.68 0.00049484 1403830000 2511200 2717100 2221600 3197500 3246300 2944000 3945800 4122900 2470600 4085500 TRUE FALSE FALSE 3069807.776 3034841.209 3043462.288 3372171.329 2923086.974 3098143.288 3102747.596 3111752.311 2966426.758 3067060.038 1.000895887 0.989495208 0.992306069 1.099480051 0.953058283 1.010134542 1.011635755 1.014571698 0.967189009 1 21.54842498 -7.745539861 24.92766362 0.983594496 1.009028082 0.075355032 0.035522537 559.55641 877296.037 0.023733109 0.008908174 1.80E-08 7.745539861 0.025433586 GGS(ph)PDLWK ddPTM_HeLa_A486_30min_R1 1 GGSPDLWK 8 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 GGS(1)PDLWK 135.43 0.00015071 0 9517400 10626000 7217600 4283500 11081000 10872000 12906000 12416000 8783400 13147000 TRUE FALSE FALSE 8850279.408 9783957.061 10012448.01 9972204.476 9691117.654 9530723.178 9676782.294 9589147.839 9544752.184 9854905.627 0.898058261 0.992800685 1.015986189 1.011902585 0.983380057 0.967104459 0.981925415 0.973032944 0.968528015 1 23.23241063 -4.25959724 24.96413731 0.988041023 0.89805823 0.736669469 0.016184694 95.06500759 1288189.272 0.00458062 0.029229792 5.50E-05 4.25959724 -0.089982793 GGS(ph)PGSDRVSETGKGPTLELAGTGSR ddPTM_HeLa_A486_30min_R1 1 GGSPGSDRVSETGKGPTLELAGTGSR 26 2 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 GGS(0.978)PGS(0.022)DRVSETGKGPTLELAGTGSR 116.39 9.84E-05 120670000 97512 81011 65761 40569 131360 65278 107120 117500 51834 114670 TRUE FALSE FALSE 90676.91235 74591.39332 91225.42034 94446.68224 114883.6039 57224.66406 80317.443 90747.81501 56327.01285 85955.88562 1.054923833 0.867786921 1.061305106 1.098780864 1.336541449 0.665744569 0.934403065 1.055748706 0.655301408 1 16.39130881 -6.272242449 24.99653815 0.870234083 1.071438198 0.322000479 0.160081606 1023.090575 2367257.937 0.057024486 0.05081043 5.34E-07 6.272242449 0.201204115 GGS(ph)PPWAANSQPQPPR ddPTM_HeLa_A485_30min_R1 1 GGSPPWAANSQPQPPR 16 0 Q15746-4;Q15746-5;Q15746-2;Q15746-3;Q15746-6;Q15746 Q15746-4 MYLK "Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form" 1 0 GGS(0.998)PPWAANS(0.002)QPQPPR 71.08 0.0038378 0 21178 16365 17271 23557 20045 15496 23541 25696 13332 37850 TRUE FALSE FALSE 25888.97304 18278.74439 23660.26161 24843.85926 18049.24942 16307.3466 18511.27304 19394.01571 16007.61011 28414.69158 0.911112231 0.643284983 0.832677052 0.874331477 0.635208352 0.573905459 0.651468378 0.682534796 0.563356814 1 14.79434944 -4.249631241 23.69076421 0.70688836 0.911112488 0.153351733 0.134502072 1613.437444 3236927.998 0.033355705 0.502005203 5.63E-05 4.249631241 0.204224128 GGS(ph)PPWAANSQPQPPR ddPTM_HeLa_A486_30min_R1 1 GGSPPWAANSQPQPPR 16 0 Q15746-4;Q15746-5;Q15746-2;Q15746-3;Q15746-6;Q15746 Q15746-4 MYLK "Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form" 1 0 GGS(1)PPWAANSQPQPPR 115.8 9.85E-06 0 20713 22185 20275 30384 28118 27385 28678 33706 18450 30809 TRUE FALSE FALSE 19261.12566 20426.9798 28126.02298 70735.48752 24591.17825 24006.51713 21502.46108 26031.8796 20049.26086 23094.22587 0.834023438 0.884505933 1.217881177 3.062907929 1.064819336 1.039503003 0.931075205 1.127202953 0.868150375 1 14.49524457 -5.965452379 24.99991725 1.003351724 1.5142537 0.148465518 0.581861034 385.3452789 278848.3148 0.193682195 0.219614044 1.08E-06 5.965452379 0.510901976 GGS(ph)PQMDDIK ddPTM_HeLa_A485_30min_R1 3 GGSPQMDDIK 10 0 A0A3B3ITG6;A0A3B3IUB1;Q13144 A0A3B3ITG6 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 1 0 GGS(1)PQMDDIK;GGS(1)PQMDDIK;GGS(1)PQMDDIK ;; 127.02 0.00010266 1277710000 1468830 1261310 1052100 2750480 1382720 1118530 1515490 1056460 1189120 3073320 TRUE FALSE FALSE 1795566.166 1408809.233 1441315.572 2900731.758 1245051.542 1177094.501 1191693.181 797361.5285 1427765.477 2307197.884 0.778245411 0.610614825 0.624703924 1.257253128 0.539637952 0.510183591 0.516511041 0.345597373 0.618830958 1 21.13771032 GGS(ph)PQMDDIK ddPTM_HeLa_A486_30min_R1 2 GGSPQMDDIK 10 0 A0A3B3ITG6;A0A3B3IUB1;Q13144 A0A3B3ITG6 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 1 0 GGS(1)PQMDDIK;GGS(1)PQMDDIK ; 102.73 0.0034796 529080000 1037130 1153210 602150 450520 831470 1173670 1195760 1020940 931920 1670580 TRUE FALSE FALSE 964432.5427 1061825.44 835318.6061 1048833.328 727179.2795 1028874.528 896568.2005 788494.249 1012699.576 1252255.894 0.770156122 0.847930079 0.667051048 0.837555114 0.580695434 0.821616838 0.715962452 0.629659044 0.808700187 1 20.25609797 -8.017593437 23.55631063 1.000000006 0.735032757 0.474085349 0.084791457 448.200797 600108.5522 0.078037225 0.020149125 9.60E-09 8.017593437 -0.264967249 GGS(ph)PQMDDIKVFQNEVLGTLQR ddPTM_HeLa_A485_30min_R1 5 GGSPQMDDIKVFQNEVLGTLQR 22 1 A0A3B3ITG6;A0A3B3IUB1;Q13144 A0A3B3ITG6 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 1 0 GGS(1)PQMDDIKVFQNEVLGTLQR;GGS(1)PQMDDIKVFQNEVLGTLQR;GGS(1)PQMDDIKVFQNEVLGTLQR;GGS(1)PQMDDIKVFQNEVLGTLQR;GGS(1)PQMDDIKVFQNEVLGTLQR ;;;; 274.57 3.30E-73 1674508000 236945.6 414816 287840.3 210670.1 376663 421313 435111 489253 267771 335009 TRUE FALSE FALSE 289653.3313 463325.1228 394324.405 222178.4741 339161.1092 443372.2972 342145.9803 369262.9346 321510.1836 251497.4217 1.151714914 1.842265896 1.567906352 0.883422473 1.348566943 1.762929792 1.36043534 1.468257337 1.278383617 1 17.94018408 -8.080022254 3.113132356 1.000259392 1.43038103 0.194708897 0.262607585 0.586683857 13.27440991 0.259631779 0.069180032 8.32E-09 8.080022254 0.430121637 GGS(ph)PQMDDIKVFQNEVLGTLQR ddPTM_HeLa_A486_30min_R1 3 GGSPQMDDIKVFQNEVLGTLQR 22 1 A0A3B3ITG6;A0A3B3IUB1;Q13144 A0A3B3ITG6 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 1 0 GGS(1)PQMDDIKVFQNEVLGTLQR;GGS(1)PQMDDIKVFQNEVLGTLQR;GGS(1)PQMDDIKVFQNEVLGTLQR ;; 276.24 2.93E-73 1125016000 407455 390509 219313 133760 429566 325506 454937 466917 280463 584707 TRUE FALSE FALSE 378894.5086 359563.6446 304236.867 311400.0399 375685.8267 285348.3792 341106.9508 360610.1918 304773.7587 438292.5614 0.864478529 0.820373596 0.694141069 0.710484428 0.857157661 0.651045453 0.778263153 0.822761378 0.695366031 1 18.74153467 -10.35919532 5.182657473 1.000112111 0.76518943 0.492400523 0.071268426 9.13E-05 1.13E-05 0.068214373 0.01653655 4.37E-11 10.35919532 -0.23492268 GGS(ph)PYNQFDIIPGDTLGGHTGPAGDSWLPAK ddPTM_HeLa_A485_30min_R1 4 GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAK 31 0 Q9UPQ9-1;Q9UPQ9;H0Y720;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 GGS(0.983)PY(0.017)NQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(0.999)PY(0.001)NQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(0.999)PY(0.001)NQFDIIPGDTLGGHTGPAGDSWLPAK ;;; 192.91 1.55E-21 1330720000 357972 424079 415684 311868 508434 423614 501938 507323 388078 512891 TRUE FALSE FALSE 437601.6364 473671.3501 569462.8097 328904.5591 457812.5257 445793.774 394694.8458 382901.2388 465961.6949 385036.7128 1.136519251 1.230197886 1.478983148 0.8542161 1.189010062 1.157795502 1.025083668 0.994453843 1.210174717 1 18.55463649 -5.259322159 24.9998995 1.069106035 1.276729859 0.383247051 0.127803795 210.5107761 2485675.094 0.03482282 0.05672785 5.50E-06 5.259322159 0.207623824 GGS(ph)PYNQFDIIPGDTLGGHTGPAGDSWLPAK ddPTM_HeLa_A486_30min_R1 2 GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAK 31 0 Q9UPQ9-1;Q9UPQ9;H0Y720;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK;GGS(1)PYNQFDIIPGDTLGGHTGPAGDSWLPAK ; 255.15 1.58E-63 574670000 417436 485751 368501 63286.1 527233 398760 471303 437863 419567 371487 TRUE FALSE FALSE 388175.892 447258.3217 511194.456 147333.2391 461102.5209 349565.0455 353378.0045 338171.1534 455935.4054 278464.2372 1.393988312 1.606160727 1.835763404 0.52909214 1.655876983 1.25533192 1.269024734 1.214415024 1.637321223 1 18.08713253 GGS(ph)SKDLLDNQSQEEQR ddPTM_HeLa_A485_30min_R1 4 GGSSKDLLDNQSQEEQR 17 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.92)S(0.08)KDLLDNQSQEEQR;GGS(0.5)S(0.5)KDLLDNQSQEEQR;GGS(0.92)S(0.08)KDLLDNQSQEEQR;GGS(0.938)S(0.062)KDLLDNQSQEEQR ;;; 203.53 1.92E-25 2618150000 1320090 1073370 947383 1873930 1415620 1152040 1532170 1366680 1056440 2282090 TRUE FALSE FALSE 1613739.466 1198891.284 1297859.396 1976298.051 1274675.902 1212359.033 1204809.363 1031499.587 1268457.818 1713206.962 0.941940759 0.69979361 0.75756136 1.153566437 0.74402914 0.707654743 0.703247996 0.602086969 0.74039964 1 20.70826801 -5.967970114 24.99880395 0.723176691 0.875846059 0.160381488 0.147888955 325.9738753 254415.9655 0.045692339 0.051809879 1.08E-06 5.967970114 0.152669368 GGS(ph)SKDLLDNQSQEEQR ddPTM_HeLa_A486_30min_R1 4 GGSSKDLLDNQSQEEQR 17 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.923)S(0.077)KDLLDNQSQEEQR;GGS(0.993)S(0.007)KDLLDNQSQEEQR;GGS(0.897)S(0.103)KDLLDNQSQEEQR;GGS(0.975)S(0.025)KDLLDNQSQEEQR ;;; 216.38 1.42E-25 2098010000 1651560 1752290 950710 667429 1546300 1975660 2131640 2085590 1463330 2253050 TRUE FALSE FALSE 1535794.173 1613432.159 1318850.373 1553808.442 1352348.635 1731923.156 1598281.126 1610746.685 1590172.623 1688871.615 0.909361114 0.955331444 0.780906234 0.920027566 0.800740934 1.025491305 0.946360346 0.953741345 0.941559209 1 20.68762823 -6.268175449 24.99974855 0.968847392 0.875298173 0.456634579 0.054490804 540.8257965 2007173.254 0.018672316 0.01683143 5.39E-07 6.268175449 -0.093549219 GGS(ph)SKDLLDNQSQEEQRR ddPTM_HeLa_A485_30min_R1 5 GGSSKDLLDNQSQEEQRR 18 2 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.484)S(0.484)KDLLDNQS(0.032)QEEQRR;GGS(0.859)S(0.141)KDLLDNQSQEEQRR;GGS(0.785)S(0.211)KDLLDNQS(0.005)QEEQRR;GGS(0.5)S(0.5)KDLLDNQSQEEQRR;GGS(0.796)S(0.204)KDLLDNQSQEEQRR ;;;; 157.53 5.73E-09 12072940000 1884570 2047820 1666550 2494850 2799410 2270320 3262300 3683670 1793180 3175140 TRUE FALSE FALSE 2303786.095 2287294.735 2283076.196 2631137.338 2520690.911 2389190.445 2565282.954 2780244.157 2153054.778 2383636.032 0.966500784 0.959582212 0.95781242 1.103833514 1.057498241 1.002330227 1.076205813 1.166387871 0.903264907 1 21.18473253 -5.23882179 23.52668482 1.051290993 0.961126806 0.244005233 0.06606753 490.9361447 510666.5699 0.01730887 0.029944345 5.77E-06 5.23882179 -0.090164187 GGS(ph)SKDLLDNQSQEEQRR ddPTM_HeLa_A486_30min_R1 5 GGSSKDLLDNQSQEEQRR 18 2 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.825)S(0.175)KDLLDNQSQEEQRR;GGS(0.806)S(0.193)KDLLDNQS(0.001)QEEQRR;GGS(0.5)S(0.5)KDLLDNQSQEEQRR;GGS(0.827)S(0.173)KDLLDNQSQEEQRR;GGS(0.903)S(0.094)KDLLDNQS(0.003)QEEQRR ;;;; 158.05 4.47E-09 12590370000 2854450 2864670 1942840 1428470 3327220 3128300 4202500 4335210 2195060 3980940 TRUE FALSE FALSE 2654367.795 2637663.116 2695159.679 3325550.351 2909889.043 2742362.152 3150990.05 3348177.32 2385329.568 2984086.712 0.889507595 0.883909675 0.9031774 1.114428189 0.975135552 0.918995464 1.055931129 1.122010733 0.799349951 1 21.50885803 -5.034217999 24.10811724 1.001816622 0.888417308 0.230590863 0.088682103 529.6861398 373187.5748 0.023531943 0.040794239 9.24E-06 5.034217999 -0.113399313 GGSDGYGS(ph)GR ddPTM_HeLa_A485_30min_R1 2 GGSDGYGSGR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGSDGYGS(1)GR;GGSDGYGS(1)GR ; 90.104 0.0032387 128797000 272460 422150 328310 331110 324620 390750 400230 535300 409850 507990 TRUE FALSE FALSE 333067.787 471516.7703 449765.5311 349197.7009 292299.693 411209.0658 314717.5909 404016.8357 492103.1356 381357.4419 0.873374295 1.236416859 1.179380502 0.915670346 0.766471716 1.078277282 0.825256194 1.059417731 1.29039867 1 18.54078433 -10.264603 14.74203246 0.999990744 1.021614159 0.001612424 0.168750886 0 0 0.168683244 0.040911696 5.44E-11 10.264603 0.021623415 GGSDGYGSGR ddPTM_HeLa_A485_30min_R1 2 GGSDGYGSGR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 184.87 4.72E-09 84839000 63080 88372 50001 76277 38980 81843 64512 98280 81994 95101 FALSE FALSE TRUE 77111.92838 98706.33667 68498.45062 80443.81937 35099.01433 86128.17293 50728.48419 74176.6759 98449.44371 71394.0709 1.080088688 1.382556498 0.959441726 1.126757703 0.491623658 1.20637711 0.710541976 1.038975295 1.378958259 1 16.12351665 -4.781931171 24.92650175 0.975439332 1.231322593 0.134622862 0.243709799 370.8411106 451096.439 0.062317091 0.129962312 1.65E-05 4.781931171 0.255883261 GGSFWSS(ph)IPAS(ph)PASRPGSFTFPGDSDSLQR ddPTM_HeLa_A485_30min_R1 1 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 GGS(0.06)FWS(0.426)S(0.531)IPAS(0.942)PAS(0.037)RPGS(0.002)FT(0.002)FPGDSDSLQR 53.728 0.029069 27008000 38492 44268 39349 39992 54532 45973 52521 50220 34027 47356 TRUE FALSE FALSE 47054.4126 49444.75752 53905.83255 42176.66169 49102.60261 48380.07519 41299.45929 37903.46626 40855.90679 35551.02072 1.323574166 1.390811192 1.516294932 1.186369922 1.381186858 1.360863182 1.161695458 1.06617097 1.149218952 1 15.11760336 -6.864796644 3.128221998 1.08345061 1.363061669 0.715231164 0.083326077 0.141867121 2.761056237 0.038654646 0.024851862 1.37E-07 6.864796644 0.279611059 GGSFWSSIPAS(ph)PASRPGSFTFPGDSDSLQR ddPTM_HeLa_A485_30min_R1 2 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GGSFWSSIPAS(0.888)PAS(0.111)RPGSFTFPGDSDSLQR;GGSFWSSIPAS(1)PASRPGSFTFPGDSDSLQR ; 339.98 8.06E-128 1552320000 680550 828230 839160 511230 864640 774150 815750 869620 551240 677790 TRUE FALSE FALSE 831935.9996 925084.2939 1149600.204 539157.2004 778553.4057 814683.2969 641458.3484 656344.3315 661868.8117 508829.4268 1.634999778 1.818063668 2.259303696 1.059603026 1.530087225 1.601093125 1.260654975 1.289910325 1.30076756 1 18.95682258 -5.952659908 0.292522283 1.005265419 2.071699749 0.449680718 0.266038187 2.911101288 0.451180642 0.382383907 1.073837085 1.12E-06 5.952659908 1.06643433 GGSFWSSIPAS(ph)PASRPGSFTFPGDSDSLQR ddPTM_HeLa_A486_30min_R1 2 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GGSFWSSIPAS(1)PASRPGSFTFPGDSDSLQR;GGSFWSSIPAS(0.998)PAS(0.002)RPGSFTFPGDSDSLQR ; 321.62 1.05E-109 1416950000 701440 761060 778890 207150 904130 600790 767730 744860 630940 762150 TRUE FALSE FALSE 652272.6782 700750.8339 1080497.067 482255.6688 790725.5847 526670.6382 575635.8338 575271.6382 685630.3872 571302.6792 1.141728723 1.22658419 1.89128654 0.844133393 1.384074701 0.921876717 1.007584691 1.006947209 1.200117577 1 19.12389577 -5.30037014 24.99998411 1.058945283 1.400539329 0.344586246 0.231832592 615.0982789 394993.4213 0.06420281 0.095229849 5.01E-06 5.30037014 0.341594046 GGSFWSSIPASPAS(ph)RPGS(ph)FTFPGDSDSLQR ddPTM_HeLa_A485_30min_R1 3 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 GGSFWSSIPAS(0.004)PAS(0.995)RPGS(0.842)FT(0.159)FPGDSDSLQR;GGSFWS(0.001)S(0.001)IPAS(0.005)PAS(0.993)RPGS(0.996)FT(0.004)FPGDSDSLQR;GGSFWSSIPAS(0.002)PAS(0.998)RPGS(0.996)FT(0.004)FPGDSDSLQR ;; 132.99 2.30E-06 499706000 474940 621278 663260 428997 756818 603700 786085 917412 680253 741702 TRUE FALSE FALSE 580588.7645 693931.0577 908627.4746 452432.0198 681466.5426 635308.7985 618131.518 692415.2686 816773.5374 556809.3414 1.042706581 1.246263319 1.631846679 0.812543875 1.223877712 1.140980855 1.110131372 1.243541042 1.466881887 1 19.08682389 -11.24190519 2.338897562 0.224516091 1.210750139 0.083701825 0.211478911 7033292.449 1200540.991 29225705.96 0.051998676 5.73E-12 11.24190519 0.986234048 GGSFWSSIPASPAS(ph)RPGS(ph)FTFPGDSDSLQR ddPTM_HeLa_A486_30min_R1 2 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 2 0 GGSFWSSIPAS(0.12)PAS(0.872)RPGS(0.539)FT(0.465)FPGDS(0.003)DSLQR;GGSFWSSIPAS(0.049)PAS(0.927)RPGS(0.923)FT(0.101)FPGDSDSLQR ; 90.287 0.00080334 332930000 222420 347560 337300 135958 374940 313060 362800 417830 266580 272360 TRUE FALSE FALSE 206829.5066 320018.0798 467911.5932 316517.0949 327911.529 274437.8402 272023.6027 322699.2302 289687.369 204159.2832 1.013079118 1.567492179 2.291894769 1.550343878 1.60615537 1.344233952 1.332408688 1.580624819 1.418928223 1 17.63933564 -6.186242597 3.906670099 1.370727428 1.644546824 0.14287942 0.319273317 0.515886863 15.17589868 0.114415455 0.112894423 6.51E-07 6.186242597 0.273819396 GGSFWSSIPASPASRPGSFTFPGDSDS(ph)LQR ddPTM_HeLa_A485_30min_R1 1 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 GGSFWSSIPASPASRPGSFTFPGDS(0.008)DS(0.991)LQR 247.66 1.46E-50 689100000 145690 206580 224530 144000 222250 217350 271770 287290 195970 206260 TRUE FALSE FALSE 178098.2379 230737.734 307592.9905 151866.3554 200122.0096 228730.1099 213704.1193 216831.677 235299.3815 154843.1779 1.150184595 1.490138197 1.986480739 0.980775242 1.29241735 1.477172666 1.38013261 1.400330838 1.519597987 1 17.2404483 -10.5897999 2.623318205 0.965418373 1.412915836 0.194385355 0.249394514 48143844.03 44083344.09 11519190.1 0.066261589 2.57E-11 10.5897999 0.447497462 GGSGS(ph)HNWGTVK ddPTM_HeLa_A485_30min_R1 1 GGSGSHNWGTVK 12 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGS(0.481)GS(0.519)HNWGTVK 204.18 3.66E-17 428660000 206350 252800 207330 220450 226970 223960 270360 277000 215840 302200 TRUE FALSE FALSE 252251.8456 282362.7609 284029.9947 232492.6253 204372.0699 235686.1993 212595.3774 209065.3157 259157.1082 226867.1016 1.111892574 1.244617483 1.251966428 1.02479656 0.900844893 1.038873409 0.937092138 0.921532096 1.142330053 1 17.79148789 -5.352131514 5.033448783 0.984599129 1.206331438 0.62594462 0.073705769 0.131674797 5.481718564 0.020506705 0.03098062 4.44E-06 5.352131514 0.221732309 GGSGSHNWGTVKDELTES(ph)PK ddPTM_HeLa_A485_30min_R1 1 GGSGSHNWGTVKDELTESPK 20 1 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGSGSHNWGTVKDELTES(1)PK 256.57 7.92E-59 841640000 384440 508320 416470 388020 969380 458240 930600 916130 493250 950850 TRUE FALSE FALSE 469957.3517 567763.6022 570539.5838 409216.5501 872865.1235 482232.7378 731769.7077 691447.6811 592240.7506 713820.5941 0.658369001 0.795386974 0.79927588 0.57327647 1.222807426 0.67556574 1.025145133 0.968657513 0.82967731 1 19.445202 -5.736996753 24.99998666 0.941746613 0.719542053 0.407578995 0.145164029 250.1211144 255823.4102 0.040646281 0.05244911 1.83E-06 5.736996753 -0.22220456 GGSGSHNWGTVKDELTES(ph)PK ddPTM_HeLa_A486_30min_R1 2 GGSGSHNWGTVKDELTESPK 20 1 Q8NC51;Q8NC51-2 Q8NC51 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGSGSHNWGTVKDELT(0.001)ES(0.999)PK;GGSGSHNWGTVKDELT(0.015)ES(0.985)PK ; 282.79 6.27E-73 1172520000 848680 749670 425450 144238 784260 719680 1198330 1040250 580090 577830 TRUE FALSE FALSE 789191.9146 690263.4189 590195.6339 335793.3534 685890.7979 630893.1988 898495.1594 803407.7835 630372.6683 433137.607 1.822035081 1.593635389 1.362605381 0.775257904 1.583540166 1.456565278 2.074387319 1.854855756 1.455363511 1 18.72446591 -6.549929922 24.98303658 1.681402064 1.409141069 0.025066471 0.365900792 524.2766028 484189.5863 0.142326091 0.110247893 2.82E-07 6.549929922 -0.272260995 GGSGYHS(ph)RS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GGSGY(0.003)HS(0.999)RS(0.999)PAR 72.662 0.02788 250640000 26573 52237 54645 23995 47796 39773 35838 48234 46237 44508 TRUE FALSE FALSE 32484.07217 58345.66275 74860.45947 25305.78609 43037.26242 41855.45278 28180.91853 36404.53587 55516.34179 33412.97471 0.972199346 1.746197795 2.240460783 0.757364057 1.288040433 1.252670651 0.84341244 1.089532919 1.66152048 1 15.02812081 -5.275528591 24.99959107 1.131303326 1.662277217 0.295765418 0.371439168 966.0529021 1714141.221 0.105107404 0.156753742 5.30E-06 5.275528591 0.53097389 GGSGYHS(ph)RS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GGS(0.018)GY(0.006)HS(0.977)RS(1)PAR;GGS(0.006)GY(0.001)HS(0.994)RS(0.999)PAR ; 82.942 0.0048777 9089600000 9259400 9164800 11819300 854810 12230200 8773900 9169800 9181400 9958900 6115400 TRUE FALSE FALSE 8610363.876 8438547.87 16396049.49 1990040.88 10696174.27 7691465.424 6875419.052 7090995.649 10822145.47 4584064.035 1.878325392 1.840844239 3.576749663 0.434121527 2.333338756 1.677870415 1.499852314 1.546879711 2.360819 1 22.12819577 -5.262758564 24.99799583 1.60902448 2.372860126 0.248207012 0.695601238 187.6067465 3555096.746 0.186676306 0.295165721 5.46E-06 5.262758564 0.763835646 GGSGYHSRS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 GGSGYHSRSPAR 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GGSGYHS(0.181)RS(0.819)PAR 109.07 0.00027266 11991000 6472.9 26579 35777 4705.9 26310 19678 23900 33291 19697 9216.9 TRUE FALSE FALSE 7912.774274 29687.18284 49012.40111 4962.971401 23690.48402 20708.30965 18793.56975 25126.33005 23650.00723 6919.296454 1.143580756 4.290491532 7.083437085 0.717265322 3.423828445 2.992834573 2.716109922 3.631341744 3.417978603 1 12.75640964 -5.286077072 24.99974307 2.727591575 4.184303743 0.165853351 1.629014066 1482.922241 1504710.357 0.459058583 0.68122318 5.18E-06 5.286077072 1.456712168 GGSISVQVNSIKFDS(ph)E ddPTM_HeLa_A485_30min_R1 12 GGSISVQVNSIKFDSE 16 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GGSISVQVNS(0.008)IKFDS(0.992)E;GGSISVQVNS(0.007)IKFDS(0.993)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.012)IKFDS(0.988)E;GGSISVQVNS(0.057)IKFDS(0.943)E;GGSISVQVNS(0.058)IKFDS(0.942)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.035)IKFDS(0.965)E ;;;;;;;;;;; 234.57 3.64E-40 29839403000 10606607 12323569 9427676 16753893 17350755 13672454 20802660 22365380 11346679 22781160 TRUE FALSE FALSE 12966010.13 13764703.19 12915365.67 17669115.75 15623252.91 14388322.55 16358001.75 16880235.49 13623853.4 17102236.07 0.758147068 0.804848158 0.755185791 1.033146524 0.913521065 0.841312358 0.956483216 0.987019207 0.796612405 1 24.02768163 -5.239868379 24.92783054 0.92844251 0.775939099 0.53199149 0.068612976 632.9840822 731486.7276 0.018237332 0.031549065 5.76E-06 5.239868379 -0.152503412 GGSISVQVNSIKFDS(ph)E ddPTM_HeLa_A486_30min_R1 16 GGSISVQVNSIKFDSE 16 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GGSISVQVNS(0.002)IKFDS(0.998)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNS(0.109)IKFDS(0.891)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.036)IKFDS(0.964)E;GGSISVQVNS(0.303)IKFDS(0.697)E;GGSISVQVNS(0.223)IKFDS(0.777)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.003)IKFDS(0.997)E;GGSISVQVNS(0.143)IKFDS(0.857)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNS(0.002)IKFDS(0.998)E;GGSISVQVNS(0.084)IKFDS(0.916)E ;;;;;;;;;;;;;;; 250.08 4.83E-41 35190052000 20049821 17728045 11518525 15874273 18393386 20611064 28754809 25874066 15297004 32855589 TRUE FALSE FALSE 18644432.09 16323210.15 15978806.36 36956109.79 16086316.02 18068280.48 21560051.65 19983106 16622960.62 24628335.66 0.757031752 0.662781699 0.648797652 1.500552465 0.653162935 0.733637901 0.87541651 0.811386781 0.674952658 1 24.5538158 -13.99946603 0.014717796 1.878829814 0.020203838 0.023468024 0.244393481 41725.79508 46.48247987 3660.06838 2345.388419 1.00E-14 13.99946603 -1.858625977 GGSMEDYCDS(ph)PHGETTSVEDSTQDVTAEHHTSDDECEPIEAIAK ddPTM_HeLa_A486_30min_R1 1 GGSMEDYCDSPHGETTSVEDSTQDVTAEHHTSDDECEPIEAIAK 44 0 B7ZM87;O75044;A0A075B7B5;Q5VZB4;A0A075B7E6 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 GGS(0.004)MEDY(0.003)CDS(0.204)PHGET(0.185)T(0.185)S(0.185)VEDS(0.047)T(0.047)QDVT(0.047)AEHHT(0.047)S(0.047)DDECEPIEAIAK 96.358 7.48E-06 148390000 18810 35919 29620 5082 38277 30147 34970 38484 26658 23028 TRUE FALSE FALSE 17491.51613 33072.64763 41089.65725 11831.15283 33475.94174 26427.76965 26220.13613 29722.0333 28968.7369 17261.63891 1.01331723 1.915962198 2.380403011 0.685401478 1.939325803 1.531011614 1.518983004 1.721854654 1.678214743 1 14.07528183 -10.11353378 4.949864631 0.99998397 1.613128322 0.13571064 0.451546033 0.000120271 2.15E-05 0.420427899 0.10196458 7.70E-11 10.11353378 0.613144352 GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKS(ph)PPTNK ddPTM_HeLa_A486_30min_R1 1 GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNK 37 1 Q9UPQ9-1;Q9UPQ9;H0Y720;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 GGSPYNQFDIIPGDTLGGHTGPAGDS(0.011)WLPAKS(0.982)PPT(0.008)NK 153.46 3.99E-10 483360000 169970 164570 79783 23943 165950 165590 232440 218890 118680 162250 TRUE FALSE FALSE 158055.9807 151528.8738 110677.1143 55740.51401 145135.0036 145161.1894 174281.0535 169053.5253 128967.278 121621.5439 1.299572227 1.24590487 0.91001241 0.458311186 1.193333014 1.19354832 1.432978466 1.389996541 1.060398296 1 16.89203928 -5.975276233 24.99985554 1.246701488 0.971810253 0.172573517 0.245699895 381.3170211 385573.3056 0.081867189 0.092836643 1.06E-06 5.975276233 -0.274891235 GGSREYDT(ph)GGGSSSSR ddPTM_HeLa_A485_30min_R1 2 GGSREYDTGGGSSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 GGS(0.058)REYDT(0.94)GGGS(0.002)SSSR;GGS(0.096)REYDT(0.785)GGGS(0.118)SSSR ; 251.81 2.17E-42 2276300000 401330 574850 1045260 602250 1752020 936110 1291680 1782040 999980 1038630 TRUE FALSE FALSE 490604.4739 642073.707 1431945.171 635149.3925 1577582.737 985123.2721 1015702.016 1344991.896 1200666.814 779718.6556 0.629207048 0.823468443 1.83648956 0.814587913 2.023271761 1.263434272 1.302651936 1.724970778 1.539871856 1 19.57259413 -4.626544638 6.402940447 1.450117255 0.678180095 0.401157127 0.350624612 0.173578252 9.089576459 0.083440367 0.226045913 2.36E-05 4.626544638 -0.771937161 GGSREYDT(ph)GGGSSSSR ddPTM_HeLa_A486_30min_R1 1 GGSREYDTGGGSSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 GGS(0.033)REYDT(0.756)GGGS(0.096)S(0.096)S(0.012)S(0.006)R 213.56 1.10E-25 847100000 468430 689880 988400 378970 1681600 851490 1043300 1261500 687580 587080 TRUE FALSE FALSE 435595.476 635211.3963 1371134.95 882261.3121 1470678.048 746441.8211 782255.3051 974283.9884 747179.988 440071.3468 0.989829216 1.44342821 3.115710578 2.004814262 3.341908212 1.696183645 1.777564731 2.2139228 1.697861025 1 18.74737791 -8.324938687 1.052324805 0.996234227 2.124924313 0.185672899 0.675471927 1.954896262 3.833335719 0.671547095 0.214228088 4.73E-09 8.324938687 1.128690086 GGSREYDTGGGSSSS(ph)R ddPTM_HeLa_A486_30min_R1 1 GGSREYDTGGGSSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 GGS(0.001)REYDT(0.233)GGGS(0.062)S(0.062)S(0.062)S(0.58)R 181.97 1.54E-16 880500000 457610 672810 1019000 340280 1601700 745150 978510 1209100 616950 592590 TRUE FALSE FALSE 425533.9021 619494.0853 1413584.09 792189.0368 1400799.851 653220.9691 733676.4484 933814.3245 670427.7227 444201.6069 0.957974702 1.394623693 3.182302963 1.783399755 3.1535227 1.470550667 1.651674458 2.102230856 1.509287027 1 18.76085509 GGSS(ph)KDLLDNQSQEEQRR ddPTM_HeLa_A486_30min_R1 1 GGSSKDLLDNQSQEEQRR 18 2 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.482)S(0.517)KDLLDNQSQEEQRR 84.993 0.00090369 1214000000 405360 338230 250020 171570 443440 380720 520030 514290 295720 424140 TRUE FALSE FALSE 376946.3573 311427.423 346834.4398 399423.6307 387819.6203 333750.6373 389912.9937 397197.3939 321353.2477 317932.5833 1.185617257 0.979539183 1.090905613 1.256315495 1.219817158 1.049752856 1.226401489 1.249313266 1.010759087 1 18.27836135 -7.844969609 9.315615792 1.002653713 1.153110629 0.327444743 0.086895218 0.439004586 44.46482484 0.088514566 0.022885009 1.43E-08 7.844969609 0.150456915 GGSSGATGEPGDSS(ph)DREPGRPPGDR ddPTM_HeLa_A486_30min_R1 1 GGSSGATGEPGDSSDREPGRPPGDR 25 2 J3KNZ9;H3BRE6 J3KNZ9 FBRS 1 0 GGSSGATGEPGDS(0.469)S(0.531)DREPGRPPGDR 76.777 0.00011874 0 76271 89419 80764 26297 95769 87298 82969 89110 76121 72882 TRUE FALSE FALSE 70924.79676 82333.11278 112037.9837 61220.74498 83756.75901 76528.06034 62209.27864 68821.59826 82719.22957 54631.87282 1.298231108 1.507052725 2.050780578 1.120604911 1.533111619 1.400795111 1.138699361 1.259733462 1.514120335 1 15.73745526 -6.070123981 1.090865027 1.253346236 1.5602147 0.19659424 0.253355512 0.857036454 2.15852788 0.125872385 0.13679288 8.51E-07 6.070123981 0.306868463 GGSSVEAPCPS(ph)DVTPEDDRSFQTVWATVFEHHVER ddPTM_HeLa_A486_30min_R1 1 GGSSVEAPCPSDVTPEDDRSFQTVWATVFEHHVER 35 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 GGSSVEAPCPS(0.498)DVT(0.498)PEDDRS(0.002)FQT(0.002)VWAT(0.001)VFEHHVER 81.566 0.00017482 172950000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GGSSVEAPCPSDVT(ph)PEDDRSFQTVWATVFEHHVER ddPTM_HeLa_A485_30min_R1 2 GGSSVEAPCPSDVTPEDDRSFQTVWATVFEHHVER 35 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 GGSSVEAPCPS(0.017)DVT(0.98)PEDDRS(0.002)FQT(0.002)VWATVFEHHVER;GGSSVEAPCPS(0.105)DVT(0.607)PEDDRS(0.212)FQT(0.069)VWAT(0.008)VFEHHVER ; 117.29 0.00018008 341950000 0 2870.8 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 3206.515087 0 0 0 0 0 0 0 0 0 GGSSVEAPCPSDVT(ph)PEDDRSFQTVWATVFEHHVER ddPTM_HeLa_A486_30min_R1 1 GGSSVEAPCPSDVTPEDDRSFQTVWATVFEHHVER 35 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 GGSSVEAPCPS(0.115)DVT(0.749)PEDDRS(0.064)FQT(0.064)VWAT(0.007)VFEHHVER 83.654 0.00091509 213390000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A485_30min_R1 1 GGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 38 1 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 GGSYVFQSDEGPEPEAEES(0.99)DLDS(0.008)GS(0.002)VHS(0.001)AS(0.001)GRPDGPVR 209.09 4.12E-30 306210000 28605 37349 55235 13900 43821 39823 39646 42381 44649 34839 TRUE FALSE FALSE 34968.08356 41716.64066 75668.72502 14659.3218 39458.02738 41908.0707 31175.30822 31986.9933 53609.64476 26154.27846 1.33699286 1.59502166 2.893168134 0.560494216 1.508664344 1.602340923 1.191977376 1.223011881 2.049746653 1 14.67475935 -5.275132498 24.98415778 1.330612596 1.907057087 0.234534406 0.524464699 1219.552075 2225164.643 0.146386354 0.218435671 5.31E-06 5.275132498 0.57644449 GGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A486_30min_R1 2 GGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 38 1 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 GGSYVFQSDEGPEPEAEES(0.988)DLDS(0.002)GS(0.002)VHS(0.004)AS(0.004)GRPDGPVR;GGSYVFQSDEGPEPEAEES(0.994)DLDS(0.005)GS(0.001)VHSASGRPDGPVR ; 229.16 2.51E-40 560780000 64011 84685 102682 4827.4 122359 59753 78879 62024 78895 36546 TRUE FALSE FALSE 59524.15945 77974.25218 142443.2203 11238.43116 107011.5933 52381.28238 59142.6399 47902.48917 85733.68212 27394.64373 2.172839335 2.846332041 5.199674131 0.410241917 3.906296221 1.91209942 2.158912541 1.748607854 3.129578285 1 14.74160622 -9.270437488 0.173375851 2.74E-11 3.355670465 0.141526305 1.225917285 28.34792539 1.509561625 22.54456382 6.062263308 5.36E-10 9.270437488 3.355670465 GGT(ph)PAGS(ph)ARGS(ph)PTRPNPPVR ddPTM_HeLa_A485_30min_R1 1 GGTPAGSARGSPTRPNPPVR 20 2 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 3 0 GGT(1)PAGS(0.998)ARGS(0.756)PT(0.245)RPNPPVR 90.097 0.00072142 641580000 277310 358010 379240 262630 469180 387460 445180 465860 318160 360160 TRUE FALSE FALSE 338996.6528 399876.1552 519536.6575 276976.8119 422466.7918 407746.8065 350063.6562 351607.1046 382011.7937 270378.7403 1.253784423 1.478948215 1.921514454 1.024403071 1.562500038 1.508057942 1.294715908 1.300424376 1.412876594 1 18.04462219 -9.676252589 0.293757282 0.803582083 1.489613687 0.254450807 0.22081706 15.06048516 1.318970075 2.954941611 0.266627927 2.11E-10 9.676252589 0.686031605 GGT(ph)PAGS(ph)ARGS(ph)PTRPNPPVR ddPTM_HeLa_A486_30min_R1 1 GGTPAGSARGSPTRPNPPVR 20 2 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 3 0 GGT(1)PAGS(0.999)ARGS(0.86)PT(0.141)RPNPPVR 85.798 0.00095294 671120000 429990 569400 585680 235830 728720 433680 644890 697980 468450 448520 TRUE FALSE FALSE 399849.9215 524278.6703 812470.9811 549024.1582 637317.1426 380176.9709 483531.701 539065.1908 509055.6232 336207.6726 1.189294457 1.559389368 2.416574776 1.632991163 1.895605587 1.130780175 1.438193535 1.603369687 1.514110666 1 18.35899312 -6.25042987 24.81277626 1.381307832 1.760584523 0.260438222 0.333171083 1039.446496 2342662.663 0.11402676 0.112964664 5.62E-07 6.25042987 0.37927669 GGT(ph)PAGS(ph)ARGSPT(ph)RPNPPVR ddPTM_HeLa_A485_30min_R1 1 GGTPAGSARGSPTRPNPPVR 20 2 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 3 0 GGT(1)PAGS(0.994)ARGS(0.434)PT(0.572)RPNPPVR 77.03 0.0017746 570470000 336300 530220 568800 382480 675450 507720 621930 664170 441580 529770 TRUE FALSE FALSE 411108.7748 592224.6167 779222.7897 403373.9139 608199.8264 534303.4341 489049.5748 501281.2661 530201.0556 397708.0887 1.033694779 1.489093719 1.959283233 1.014246191 1.529261897 1.343456292 1.229669672 1.260425122 1.333141243 1 18.60135038 -8.381921706 0.372910575 0.963588678 1.438676511 0.161018972 0.254390711 4.012713101 1.202064134 0.598443845 0.225021574 4.15E-09 8.381921706 0.475087833 GGT(ph)PAGSARGS(ph)PTRPNPPVR ddPTM_HeLa_A485_30min_R1 2 GGTPAGSARGSPTRPNPPVR 20 2 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 2 0 GGT(1)PAGS(0.363)ARGS(0.569)PT(0.069)RPNPPVR;GGT(0.987)PAGS(0.068)ARGS(0.918)PT(0.027)RPNPPVR ; 75.529 0.0028813 787240000 153735 660770 500030 118063 688680 745640 808610 1862190 360380 235270 TRUE FALSE FALSE 187932.8204 738041.3036 685011.905 124512.4827 620112.6011 784680.5574 635843.8678 1405484.983 432704.9604 176621.5188 1.064042602 4.178660157 3.878417022 0.704967795 3.510968568 4.442723416 3.600036236 7.957608971 2.449899442 1 17.4303016 -5.997008198 24.94664072 4.270119141 2.60945477 0.09077243 1.953747775 183.3175407 1528534.223 0.591377533 0.667016347 1.01E-06 5.997008198 -1.660664371 GGT(ph)YPRR ddPTM_HeLa_A485_30min_R1 2 GGTYPRR 7 1 J3KRN4;J3QRB6;Q99759;Q99759-2;Q9Y2U5 J3KRN4;Q9Y2U5 MAP3K3;MAP3K2 Mitogen-activated protein kinase kinase kinase 3;Mitogen-activated protein kinase kinase kinase 2 1 0 GGT(0.999)Y(0.001)PRR;GGT(1)YPRR ; 73.665 0.015617 225710000 104072 167155 133111 100177 153033 150171 188338 222000 132714 129704 TRUE FALSE FALSE 127222.4574 186702.3232 182354.2981 105649.4158 137796.4972 158033.7214 148098.0477 167554.1519 159348.4825 97371.17983 1.306572002 1.917428992 1.872774865 1.085017312 1.415167172 1.623003045 1.520963883 1.72077767 1.636505615 1 16.5712072 -5.203797242 24.9997842 1.470172829 1.720775557 0.162214091 0.268734187 536.5104242 232686.9 0.072856878 0.126191779 6.25E-06 5.203797242 0.250602728 GGTLGGGTLGPPS(ph)PPGAPS(ph)PPEPGGEIELVFRPHPLLVEK ddPTM_HeLa_A485_30min_R1 1 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 2 0 GGTLGGGT(0.001)LGPPS(0.999)PPGAPS(1)PPEPGGEIELVFRPHPLLVEK 82.516 0.00099339 240910000 69550 65227 80443 118150 93362 64111 80091 65538 95640 132510 TRUE FALSE FALSE 85021.15756 72854.73025 110202.2132 124604.2353 84066.55147 67467.75283 62978.90357 49464.70274 114834.0707 99477.69567 0.854675583 0.732372516 1.107808263 1.252584657 0.845079401 0.6782199 0.633095722 0.497244155 1.154370032 1 16.60208547 -5.992692675 24.98698975 0.752357121 0.986260506 0.139141478 0.21799535 301.9364335 1032445.723 0.06954212 0.078697089 1.02E-06 5.992692675 0.233903385 GGTLGGGTLGPPS(ph)PPGAPS(ph)PPEPGGEIELVFRPHPLLVEK ddPTM_HeLa_A486_30min_R1 1 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 2 0 GGTLGGGTLGPPS(1)PPGAPS(1)PPEPGGEIELVFRPHPLLVEK 211.76 3.67E-30 251120000 193490 202880 164950 77395 216460 224740 221150 215170 202930 222360 TRUE FALSE FALSE 179927.3502 186803.0499 228823.0575 180179.4713 189309.5684 197013.8638 165815.9309 166180.4881 220520.1358 166679.6087 1.079480277 1.120731272 1.372831742 1.080992887 1.135769216 1.181991399 0.994818336 0.997005509 1.32301808 1 17.34671809 -6.726002953 24.98706916 1.078460765 1.164805286 0.105755067 0.11842984 413.2652195 291402.6559 0.045212794 0.035020327 1.88E-07 6.726002953 0.086344522 GGTLGGGTLGPPS(ph)PPGAPSPPEPGGEIELVFRPHPLLVEK ddPTM_HeLa_A485_30min_R1 1 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 0 GGTLGGGTLGPPS(1)PPGAPSPPEPGGEIELVFRPHPLLVEK 195.69 5.88E-23 399200000 111150 89423 99245 143090 126730 88256 115370 87755 111100 188350 TRUE FALSE FALSE 135874.934 99880.24197 135959.8554 150906.6444 114112.3162 92876.94769 90720.25701 66232.94866 133396.7509 141397.8113 0.960940857 0.706377567 0.961541442 1.067248799 0.807030287 0.656848552 0.641595907 0.468415657 0.943414539 1 17.10940026 -5.998971756 24.97100568 0.705817452 0.914407775 0.194537656 0.166403598 48.49415237 1177625.899 0.051149165 0.05753698 1.00E-06 5.998971756 0.208590323 GGTLGGGTLGPPS(ph)PPGAPSPPEPGGEIELVFRPHPLLVEK ddPTM_HeLa_A486_30min_R1 2 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 0 GGT(0.001)LGGGT(0.001)LGPPS(0.999)PPGAPSPPEPGGEIELVFRPHPLLVEK;GGTLGGGTLGPPS(1)PPGAPSPPEPGGEIELVFRPHPLLVEK ; 256.15 2.22E-65 1004880000 303944 355189 245074 122827 325778 384211 343365 350471 329240 341115 TRUE FALSE FALSE 282639.0952 327042.5301 339973.2161 285947.4633 284915.8855 336810.9532 257451.4453 270676.404 357778.7883 255697.5837 1.105364748 1.279020808 1.329591039 1.118303346 1.114268979 1.31722384 1.006859124 1.058580218 1.399226317 1 17.964079 -5.287070338 24.36205971 1.147513231 1.242095098 0.095535486 0.130876517 1291.013189 1227096.777 0.036328011 0.053911447 5.16E-06 5.287070338 0.094581867 GGTPAFLPSSLS(ph)PQSSLPASR ddPTM_HeLa_A485_30min_R1 3 GGTPAFLPSSLSPQSSLPASR 21 0 E5RGS7;H0YBP7;B3KPU0;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7 PDLIM2 PDZ and LIM domain protein 2 1 0 GGTPAFLPS(0.005)S(0.026)LS(0.962)PQS(0.003)S(0.002)LPAS(0.001)R;GGTPAFLPS(0.001)S(0.003)LS(0.926)PQS(0.051)S(0.019)LPASR;GGTPAFLPS(0.009)S(0.105)LS(0.885)PQS(0.001)SLPASR ;; 322.71 1.69E-102 663620000 400322 612480 584960 374726 755320 516197 594420 688870 581050 562220 TRUE FALSE FALSE 489372.2478 684104.2081 801361.0462 395196.3325 680117.6887 543224.2767 467417.311 519923.5524 697661.4053 422068.9009 1.159460569 1.620835382 1.898649828 0.936331323 1.611390195 1.28705118 1.107443145 1.231845207 1.652956197 1 18.68711901 -5.260133752 24.99899285 1.279949236 1.565767245 0.196218961 0.275042447 202.1311101 3870188.687 0.074659437 0.120768662 5.49E-06 5.260133752 0.285818008 GGTPAFLPSSLS(ph)PQSSLPASR ddPTM_HeLa_A486_30min_R1 4 GGTPAFLPSSLSPQSSLPASR 21 0 E5RGS7;H0YBP7;B3KPU0;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7 PDLIM2 PDZ and LIM domain protein 2 1 0 GGTPAFLPS(0.029)S(0.01)LS(0.959)PQS(0.001)SLPASR;GGTPAFLPS(0.042)S(0.14)LS(0.818)PQSSLPASR;GGTPAFLPS(0.001)S(0.011)LS(0.988)PQSSLPASR;GGTPAFLPS(0.003)S(0.111)LS(0.855)PQS(0.025)S(0.007)LPASR ;;; 338.5 1.45E-114 739440000 753980 813510 860610 248084 1027210 749250 811922 889960 676750 815410 TRUE FALSE FALSE 701129.8956 749044.5048 1193861.24 577552.0895 898367.7434 656815.1528 608770.528 687335.5357 735411.2349 611226.0286 1.147087759 1.225478742 1.953223822 0.944907551 1.46977992 1.074586359 0.995982664 1.124519414 1.20317395 1 19.22134646 -6.277984352 22.59514705 1.082205484 1.352502404 0.222312138 0.250949804 374.9523331 512061.882 0.087498375 0.077468539 5.27E-07 6.277984352 0.27029692 GGTPAGSARGSPT(ph)RPNPPVR ddPTM_HeLa_A485_30min_R1 1 GGTPAGSARGSPTRPNPPVR 20 2 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GGTPAGS(0.001)ARGS(0.412)PT(0.587)RPNPPVR 70.174 0.024095 94882000 4961.7 22783 8244.3 4709.8 16188 32303 35335 137880 5768.1 7673.4 TRUE FALSE FALSE 6065.413047 25447.27366 11294.20964 4967.084448 14576.26588 33994.33513 27785.38859 104064.7138 6925.704762 5760.562598 1.052920256 4.417497984 1.960608786 0.862256831 2.530354567 5.901217902 4.82338107 18.06502612 1.20226187 1 12.491994 -6.472609072 2.115827581 7.701279645 2.176060754 0.138139882 4.582389795 0.485690805 4.329525078 1.898065353 1.5128324 3.37E-07 6.472609072 -5.525218891 GGTTSWGTSGQPS(ph)PSYDSSR ddPTM_HeLa_A485_30min_R1 2 GGTTSWGTSGQPSPSYDSSR 20 0 Q99081;Q99081-3;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 0 GGTTSWGTSGQPS(0.997)PS(0.003)YDSSR;GGTTSWGTSGQPS(1)PSYDSSR ; 374 4.45E-142 1159640000 330230 456270 500840 305850 479640 390080 402680 412320 283120 308630 TRUE FALSE FALSE 403688.5242 509626.8075 686121.5577 322557.811 431885.3575 410503.9856 316644.1284 311197.8735 339939.5871 231694.2209 1.742333161 2.199566331 2.961323571 1.392170291 1.864031635 1.77174892 1.36664664 1.343140421 1.467190618 1 17.82186253 -6.351118298 0.627957206 1.178667637 2.246339255 0.488230616 0.37519055 0.710511111 0.605286776 0.313470798 0.313209946 4.46E-07 6.351118298 1.067671618 GGTTSWGTSGQPS(ph)PSYDSSR ddPTM_HeLa_A486_30min_R1 2 GGTTSWGTSGQPSPSYDSSR 20 0 Q99081;Q99081-3;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 0 GGTTSWGTSGQPS(0.999)PS(0.001)YDSSR;GGTTSWGTSGQPS(0.998)PS(0.002)YDSSR ; 261.17 9.06E-59 936490000 472940 476060 430320 125972 532010 389250 431900 425810 351000 433910 TRUE FALSE FALSE 439789.3483 438335.2718 596951.4284 293269.1823 465280.345 341228.2926 323834.0518 328862.3584 381424.9626 325256.1117 1.352132466 1.347661907 1.835327322 0.901656177 1.430504542 1.049106474 0.995627876 1.011087406 1.172691147 1 18.31121664 -5.275083898 24.99984417 1.0903478 1.495302725 0.533211065 0.184694777 615.5189217 1127768.52 0.051632057 0.077043008 5.31E-06 5.275083898 0.404954925 GGVRT(ph)PVPPR ddPTM_HeLa_A485_30min_R1 1 GGVRTPVPPR 10 1 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 GGVRT(1)PVPPR 60.628 0.034121 320590000 42934 53787 49190 41835 82002 59923 66863 75604 47902 57185 TRUE FALSE FALSE 52484.52018 60076.92177 67387.42797 44120.34012 73837.59295 63060.47562 52577.17383 57062.00046 57515.49202 42929.83191 1.222565238 1.399421314 1.569710967 1.02773149 1.719959983 1.468919696 1.224723496 1.329192264 1.339755817 1 15.3896929 -8.830779184 0.670021361 0.9873761 1.389803176 0.271868739 0.182343182 4.438978435 2.560965491 0.327349871 0.068855556 1.48E-09 8.830779184 0.402427076 GGVRT(ph)PVPPR ddPTM_HeLa_A486_30min_R1 3 GGVRTPVPPR 10 1 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 GGVRT(1)PVPPR;GGVRT(1)PVPPR;GGVRT(1)PVPPR ;; 64.65 0.024878 1250240000 200688 241579 221627 97344 284621 202872 261848 235399 216681 262189 TRUE FALSE FALSE 186620.8076 222435.4002 307446.9098 226621.7515 248921.1802 177843.7153 196330.8609 181803.7864 235463.0835 196535.1678 0.949554269 1.131784213 1.564335346 1.153084987 1.266547778 0.904895125 0.998960456 0.925044553 1.198070992 1 17.58442796 -6.252925927 24.84411779 1.000307398 1.224729137 0.291200253 0.161385994 752.9058007 2197144.863 0.055181672 0.05434602 5.59E-07 6.252925927 0.224421739 GGVTGS(ph)PEASIS(ph)GSKGDLK ddPTM_HeLa_A486_30min_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GGVT(0.095)GS(0.905)PEASIS(0.671)GS(0.328)KGDLK 174.19 7.16E-13 274830000 524440 592160 245460 424310 490450 789080 999800 849540 408130 1337200 TRUE FALSE FALSE 487679.4642 545235.085 340508.6856 987815.1234 428933.1877 691731.3324 749639.4652 656118.2873 443507.037 1002356.416 0.48653299 0.543953305 0.339708192 0.985492892 0.427924819 0.690105157 0.747877155 0.654575834 0.442464407 1 19.93496416 -14 0.203172358 2.773929816 0.539369935 0.309408719 0.18008612 179.8106287 1.783993252 130.5423623 0.410214293 1.00E-14 14 -2.234559881 GGVTGS(ph)PEASISGS(ph)KGDLK ddPTM_HeLa_A485_30min_R1 2 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GGVT(0.074)GS(0.926)PEASIS(0.157)GS(0.842)KGDLK;GGVT(0.013)GS(0.987)PEAS(0.008)IS(0.283)GS(0.71)KGDLK ; 147.41 2.12E-08 731130000 1417170 822260 542960 2723800 1269450 1260960 2061390 1743470 970350 4017500 TRUE FALSE FALSE 1732414.577 918416.1543 743823.4985 2872594.297 1143059.101 1326981.916 1620957.186 1315881.249 1165090.344 3016011.187 0.574405886 0.304513511 0.246624914 0.952448157 0.37899697 0.439979109 0.537450655 0.436298531 0.386301732 1 21.52421035 -10.01455308 4.328455837 1.000026817 0.472569713 0.42172847 0.185130541 247835036.2 577348699.7 108128.3183 0.0459951 9.67E-11 10.01455308 -0.527457104 GGVTGS(ph)PEASISGS(ph)KGDLK ddPTM_HeLa_A486_30min_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GGVT(0.472)GS(0.528)PEAS(0.009)IS(0.178)GS(0.813)KGDLK 76.691 0.0039362 433180000 351510 381440 152380 307660 333120 463260 656360 567730 338860 915490 TRUE FALSE FALSE 326870.9642 351213.3052 211385.6169 716248.0283 291336.9834 406107.6913 492131.7857 438470.2725 368232.6576 686245.3452 0.476317933 0.511789709 0.308032132 1.043720053 0.424537646 0.591782071 0.717136793 0.638940979 0.53659039 1 19.38836493 -14 0.155247354 2.453069994 0.472564987 0.320622535 0.185981807 165.5961242 1.499325151 74.61307696 0.850258916 1.00E-14 14 -1.980505007 GGVTGS(ph)PEASISGSK ddPTM_HeLa_A485_30min_R1 7 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVT(0.001)GS(0.998)PEAS(0.001)ISGSK;GGVT(0.01)GS(0.908)PEAS(0.079)IS(0.003)GSK;GGVTGS(0.986)PEAS(0.014)ISGSK;GGVTGS(1)PEASISGSK ;;;;;; 367.68 2.26E-118 30612400000 13691410 10434930 10850180 19053390 16515300 12075400 16416160 12708050 14033760 26138700 TRUE FALSE FALSE 16737016.92 11655204.29 14864113.1 20094228.45 14870978.74 12707649.27 12908713.31 9591380.812 16850206.91 19622803.14 0.852937106 0.593962249 0.757491832 1.024024361 0.757841713 0.647596023 0.657842471 0.488787496 0.858705394 1 24.22602781 -6.006503855 24.79200434 0.695047868 0.8011604 0.02445238 0.162217767 729.1360242 2779402.128 0.051123555 0.055964779 9.85E-07 6.006503855 0.106112532 GGVTGS(ph)PEASISGSK ddPTM_HeLa_A486_30min_R1 6 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(1)PEASISGSK;GGVTGS(0.999)PEAS(0.001)ISGSK ;;;;; 358.69 1.64E-104 21934190000 8551820 11059580 7711010 3578020 11399480 11655890 12419510 11815320 9490000 10659010 TRUE FALSE FALSE 7952381.58 10183178.6 10696919.58 8329811.383 9969650.922 10217904.8 9312017.238 9125229.563 10312600.84 7989924.517 0.995301215 1.274502479 1.338801081 1.042539434 1.247777861 1.278848727 1.165469989 1.142092086 1.290700659 1 22.92975044 -10.31831709 5.797512692 0.999977607 1.200533301 0.236558862 0.106212997 2.97E-05 3.50E-06 0.099434676 0.024113761 4.80E-11 10.31831709 0.200555695 GGVTGSPEASIS(ph)GSK ddPTM_HeLa_A486_30min_R1 1 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEAS(0.001)IS(0.542)GS(0.456)K 79.771 0.0047183 68603000 102470 120120 62749 58825 82913 119320 136070 111860 85198 170500 TRUE FALSE FALSE 95287.38216 110601.2537 87047.09328 136947.5729 72513.27841 104599.5116 102023.8468 86391.91989 92583.03124 127805.6902 0.745564474 0.86538599 0.681089341 1.071529543 0.567371283 0.818426092 0.798273118 0.675963016 0.72440461 1 16.96359254 -3.956967349 14.9103569 0.789145274 0.554628396 0.007507043 0.144504424 6783391.619 69712761.88 0.0336724 43148930.37 0.000110416 3.956967349 -0.234516878 GGVTGSPEASISGS(ph)K ddPTM_HeLa_A485_30min_R1 1 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEAS(0.002)IS(0.064)GS(0.934)K 69.431 0.0060545 0 61291 54182 39355 88903 52982 58558 77518 74294 51544 115440 TRUE FALSE FALSE 74924.9715 60518.11358 53914.0522 93759.54578 47706.92605 61624.00633 60955.64604 56073.28001 61888.40801 86662.93252 0.864556152 0.698316014 0.622112022 1.081887527 0.55048825 0.711076865 0.703364683 0.647027263 0.714127785 1 16.40312744 -10.10816656 4.239053216 1.000044169 0.729210068 0.247862797 0.139658212 33817147.07 20159539.18 12957.57383 0.032775533 7.80E-11 10.10816656 -0.270834101 GGVTGSPEASISGS(ph)KGDLK ddPTM_HeLa_A485_30min_R1 2 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEASIS(0.046)GS(0.954)KGDLK;GGVTGSPEASIS(0.005)GS(0.995)KGDLK ; 223.89 4.01E-35 1983700000 1175860 682320 411540 2169110 956630 862210 1483820 1362450 686330 3068800 TRUE FALSE FALSE 1437426 762111.3886 563785.7716 2287602.987 861384.5583 907353.9824 1166789.735 1028307.001 824070.1356 2303804.637 0.623935718 0.330805562 0.244719436 0.992967437 0.373896529 0.393850228 0.5064621 0.44635165 0.35769966 1 21.13558695 -10.78376114 2.755326213 1.133407524 0.473562291 0.385172637 0.199167433 89502578.84 70847258.92 80510819.19 0.049345721 1.65E-11 10.78376114 -0.659845233 GGVTGSPEASISGS(ph)KGDLK ddPTM_HeLa_A486_30min_R1 4 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEASIS(0.004)GS(0.996)KGDLK;GGVTGSPEASIS(0.014)GS(0.986)KGDLK;GGVTGSPEASIS(0.029)GS(0.971)KGDLK;GGVTGSPEASIS(0.002)GS(0.998)KGDLK ;;; 255.99 2.66E-58 4366910000 2807160 2929170 1225140 2240010 2302700 3681180 5231950 4322860 2113860 6077300 TRUE FALSE FALSE 2610392.58 2697051.901 1699547.018 5214856.484 2013873.894 3227033.439 3922860.772 3338639.145 2297091.087 4555504.523 0.573019424 0.592042415 0.373075476 1.144737418 0.442074831 0.708381129 0.861125426 0.732880217 0.504245156 1 22.11917941 -14 0.116904961 1.960866315 0.511654266 0.181030207 0.212992972 286.3807976 2.184458512 67.12414784 2.200250314 1.00E-14 14 -1.44921205 GGVVGIK(ac)VDK ddPTM_HeLa_A485_30min_R1 1 GGVVGIKVDK 10 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 GGVVGIK(1)VDK 142.92 0.0030297 42224000 25509 21722 28977 26477 37104 22035 27885 25641 20725 35901 FALSE TRUE FALSE 31183.38904 24262.19894 39696.79813 27923.37147 33409.79548 23188.71853 21927.14195 19352.50455 24884.3174 26951.54141 1.157016906 0.900215634 1.47289528 1.036058422 1.239624665 0.860385615 0.813576545 0.718048154 0.923298487 1 14.71808017 -6.274851447 21.45889737 0.842346719 1.157033415 0.483232423 0.153359502 99.16582923 158660.554 0.052149919 0.046378809 5.31E-07 6.274851447 0.314686695 GGVVGIK(ac)VDK ddPTM_HeLa_A486_30min_R1 1 GGVVGIKVDK 10 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 GGVVGIK(1)VDK 140.75 0.0035116 26006000 24256 30516 26064 10188 36296 34841 36537 37170 28678 40522 FALSE TRUE FALSE 22555.77966 28097.80102 36156.67882 23718.17887 31743.41723 30542.67166 27395.05615 28707.20242 31163.83213 30375.02745 0.742576437 0.925029651 1.19034226 0.780844689 1.045049829 1.005519146 0.901894038 0.94509223 1.025968855 1 14.89059809 -4.314046405 4.205945456 0.981304127 0.733918149 0.347732875 0.09969054 0.210685764 7.213316434 0.023955104 0.135108066 4.85E-05 4.314046405 -0.247385978 GGVVGIKVDK ddPTM_HeLa_A485_30min_R1 2 GGVVGIKVDK 10 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 125.22 0.0039216 0 127935 152342 120301 122387 195411 212760 274860 336120 146469 183336 FALSE FALSE TRUE 156393.6994 170157.0717 164805.346 129072.6919 175955.1947 223899.7846 216133.9156 253686.043 175863.9848 137633.7092 1.136303746 1.236303756 1.197419927 0.937798542 1.278430958 1.626780139 1.57035596 1.843197022 1.277768257 1 17.07047433 -6.060782168 5.095014382 1.519780221 1.13561803 0.320091781 0.223908209 0.215030279 11.40270893 0.071451359 0.072909297 8.69E-07 6.060782168 -0.384162191 GGWDHGDT(ph)QSIQS(ph)SR ddPTM_HeLa_A486_30min_R1 1 GGWDHGDTQSIQSSR 15 0 Q9P206-2;Q9P206;Q9P206-3;Q9P206-4 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 2 0 GGWDHGDT(0.524)QS(0.476)IQS(0.613)S(0.387)R 169.6 2.41E-10 0 308640 391900 364490 101840 412710 288520 340170 356230 321850 303640 TRUE FALSE FALSE 287005.9298 360844.4167 505630.2894 237088.6667 360944.0634 252925.3359 255055.868 275124.2054 349748.2171 227606.5676 1.26097385 1.585386663 2.221510102 1.041660042 1.585824465 1.111239181 1.120599773 1.208770943 1.536634996 1 17.79618266 -5.298002326 24.99877199 1.243359274 1.67890062 0.35207335 0.285439043 646.9782879 442349.7854 0.080005281 0.118670455 5.03E-06 5.298002326 0.435541347 GGYDGYRPSFSNT(ph)PNSGYTQSQFSAPR ddPTM_HeLa_A486_30min_R1 1 GGYDGYRPSFSNTPNSGYTQSQFSAPR 27 1 G3V153;Q14444-2;Q14444 G3V153 CAPRIN1 Caprin-1 1 0 GGYDGYRPS(0.001)FS(0.004)NT(0.995)PNS(0.001)GYTQSQFSAPR 184.44 3.84E-20 202220000 56697 52848 45492 13131 64814 40674 55497 43193 45011 52043 TRUE FALSE FALSE 52722.83308 48660.13201 63107.72072 30569.6316 56684.42375 35656.05542 41611.06361 33358.8968 48912.58972 39011.09406 1.351483068 1.24734087 1.617686513 0.783613799 1.453033429 0.913997833 1.066646927 0.85511308 1.253812304 1 15.25159684 -5.257169189 24.9999677 1.052810142 1.38968721 0.397717968 0.202011482 380.3995695 2227054.413 0.052548692 0.087134395 5.53E-06 5.257169189 0.336877068 GGYFDEFGIIR ddPTM_HeLa_A485_30min_R1 2 GGYFDEFGIIR 11 0 P11413-2;P11413;E7EM57;E7EUI8;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 129.38 0.0020395 16288000 60131 75442 79516 62813 86181 72102 76774 83730 68250 88874 FALSE FALSE TRUE 73506.9335 84264.28564 108932.2773 66244.31514 77600.51704 75877.14923 60370.60771 63195.08622 81947.14897 66719.3474 1.101733401 1.262966275 1.632693987 0.992880142 1.16308867 1.137258564 0.904844098 0.947177823 1.228236668 1 16.02581756 -5.313818582 24.99996697 1.053034387 1.325516166 0.407300926 0.154223304 329.9982416 157503.4687 0.044263382 0.065653278 4.85E-06 5.313818582 0.272481779 GGYFDEFGIIR ddPTM_HeLa_A486_30min_R1 1 GGYFDEFGIIR 11 0 P11413-2;P11413;E7EM57;E7EUI8;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 105.4 0.032365 16180000 20042 22440 18555 11249 28252 21952 23877 25080 18499 25723 FALSE FALSE TRUE 18637.1593 20661.77267 25739.99292 26188.24049 24708.37072 19243.78543 17902.72205 19369.83149 20102.50821 19281.79337 0.966567732 1.071569033 1.334937701 1.358184894 1.281435302 0.998028817 0.928478058 1.004565868 1.042564238 1 14.23495162 -6.275420428 22.76275574 0.990872107 1.211265302 0.456335241 0.113173833 246.0010991 400515.6762 0.044758315 0.03972856 5.30E-07 6.275420428 0.220393194 GHCPPAPAK(ac)PMHPENK ddPTM_HeLa_A485_30min_R1 4 GHCPPAPAKPMHPENK 16 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 0 1 ;;; GHCPPAPAK(1)PMHPENK;GHCPPAPAK(1)PMHPENK;GHCPPAPAK(1)PMHPENK;GHCPPAPAK(1)PMHPENK 166.9 9.73E-11 165907000 202882 244510 220107 248393 289859 289561 362104 414720 268423 343268 FALSE TRUE FALSE 248012.401 273103.3175 301533.7387 261962.0806 260999.6202 304721.9662 284737.5223 313009.2697 322293.034 257697.605 0.962416399 1.059782133 1.170106873 1.016548371 1.012813527 1.182478845 1.104928865 1.214637869 1.250663676 1 17.9753196 -6.266673038 24.8952011 1.161105909 1.050635515 0.296274808 0.080737946 537.3771648 2556159.275 0.028041106 0.025477861 5.41E-07 6.266673038 -0.110470394 GHCPPAPAK(ac)PMHPENK ddPTM_HeLa_A486_30min_R1 4 GHCPPAPAKPMHPENK 16 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 0 1 ;;; GHCPPAPAK(1)PMHPENK;GHCPPAPAK(1)PMHPENK;GHCPPAPAK(1)PMHPENK;GHCPPAPAK(1)PMHPENK 191.78 1.71E-14 159369000 382055 376260 262192 140097 386913 363778 436756 428898 315699 476825 FALSE TRUE FALSE 355274.9174 346443.7873 363719.7641 326152.8961 338382.7637 318898.769 327475.0293 331247.2882 343064.0435 357424.9164 0.993984754 0.969277102 1.017611665 0.912507442 0.946724048 0.892211915 0.916206493 0.926760483 0.959821288 1 18.44728068 -5.266031336 24.99530537 0.931024914 0.991189767 0.423231875 0.030176925 332.3545117 1809100.029 0.008095804 0.012487573 5.42E-06 5.266031336 0.060164853 GHCPPAPAK(ac)PMHPENK(ac)LTNHGK ddPTM_HeLa_A485_30min_R1 2 GHCPPAPAKPMHPENKLTNHGK 22 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 0 2 ; GHCPPAPAK(1)PMHPENK(1)LTNHGK;GHCPPAPAK(1)PMHPENK(1)LTNHGK 156.92 3.75E-17 63985000 28021 43702 42911 31832 49024 54757 76251 109263 81945 100400 FALSE TRUE FALSE 34254.17478 48812.56874 58785.56458 33570.90156 44142.99843 57623.99185 59959.35094 82466.07793 98390.60986 75372.12773 0.454467398 0.647620947 0.779937708 0.445402068 0.585667405 0.764526538 0.795510924 1.094119012 1.305397802 1 16.2017435 -7.046509503 1.565721484 1.173039365 0.5986807 0.790383335 0.120810763 0.177855833 0.834663865 0.083985751 0.038989986 8.98E-08 7.046509503 -0.574358664 GHCPPAPAK(ac)PMHPENK(ac)LTNHGK ddPTM_HeLa_A486_30min_R1 2 GHCPPAPAKPMHPENKLTNHGK 22 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 0 2 ; GHCPPAPAK(1)PMHPENK(1)LTNHGK;GHCPPAPAK(1)PMHPENK(1)LTNHGK 223.51 1.18E-35 95492000 109054 110242 91679 32757 138107 112810 138425 133669 101415 144614 FALSE TRUE FALSE 101409.8778 101506.0224 127179.564 76259.95145 120784.3323 98892.64917 103789.6009 103235.4867 110205.7339 108401.7131 0.935500693 0.936387623 1.173224669 0.703493969 1.114228999 0.912279394 0.957453512 0.952341838 1.016641995 1 16.72602803 -7.762246755 24.54347367 1.008321009 0.961726674 0.025516787 0.117767657 81.90378111 2488870.758 0.087960975 0.027725062 1.73E-08 7.762246755 -0.046594335 GHDGGHSHGGDMSNRPVCR ddPTM_HeLa_A485_30min_R1 6 GHDGGHSHGGDMSNRPVCR 19 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 0 ;;;;; ;;;;; 169.67 1.20E-12 284115000 28202.7 47903.2 60617.63 18557.55 62367.4 32047.67 31463.5 48475.5 44235.87 36532.17 FALSE FALSE TRUE 34476.29332 53505.06254 83042.61385 19571.30197 56157.88267 33725.63645 24741.06619 36586.80762 53113.60335 27425.37234 1.257094813 1.950932949 3.027948456 0.713620283 2.047661631 1.229723922 0.902123256 1.334049622 1.936659335 1 14.74322359 -5.279040914 24.99213749 1.333544736 2.065886353 0.281702013 0.562058226 1079.871829 1533290.224 0.158143697 0.235152973 5.26E-06 5.279040914 0.732341617 GHDGGHSHGGDMSNRPVCR ddPTM_HeLa_A486_30min_R1 8 GHDGGHSHGGDMSNRPVCR 19 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 0 ;;;;;;; ;;;;;;; 160.43 9.49E-13 244490200 47743.52 45348.1 49987.7 2836.94 63088.5 33986.34 35543.7 32530.5 34317.1 20657.3 FALSE FALSE TRUE 44396.9458 41754.5514 69344.27616 6604.539691 55175.35205 29793.45092 26650.29032 25124.01529 37291.73386 15484.57762 2.867171897 2.696525047 4.478280121 0.426523723 3.563245533 1.924072561 1.721086036 1.622518605 2.408314567 1 13.91854441 -3.720885216 0.126380959 0.498575844 6.010845824 0.248281831 0.986959078 58.96759421 1.04038097 7.582007362 55.79887586 0.000190158 3.720885216 5.51226998 GHHDDS(ph)DEEASPEK ddPTM_HeLa_A486_30min_R1 1 GHHDDSDEEASPEK 14 0 Q5VT06;H0Y6Q4 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 GHHDDS(1)DEEASPEK 140.8 9.00E-07 347880000 501130 609520 415710 187800 611020 553780 604640 575140 491190 439510 TRUE FALSE FALSE 466003.3748 561219.4154 576684.0451 437207.8909 534380.1741 485460.254 453352.6768 444193.1772 533766.7447 329453.8353 1.414472454 1.703484237 1.75042444 1.327068755 1.622018374 1.473530438 1.376073453 1.34827138 1.620156415 1 18.3297168 -12.162117 0.190585905 2.16E-14 1.628829517 0.541102783 0.143135786 46.76039613 0.860844266 19.24651994 0.41389632 6.88E-13 12.162117 1.628829517 GHHLPSENLGKEPLDPDPS(ph)HSPSDKVGR ddPTM_HeLa_A485_30min_R1 1 GHHLPSENLGKEPLDPDPSHSPSDKVGR 28 2 Q8NFQ8 Q8NFQ8 TOR1AIP2 Torsin-1A-interacting protein 2 1 0 GHHLPSENLGKEPLDPDPS(0.478)HS(0.478)PS(0.044)DKVGR 61.099 0.010561 71828000 66677 59803 35724 74913 65049 65744 92155 118110 59278 165280 TRUE FALSE FALSE 81509.06862 66796.44063 48939.7942 79005.3075 58572.49316 69186.25418 72465.33141 89143.33731 71174.55087 124078.7378 0.65691407 0.538339137 0.394425307 0.636735261 0.472059067 0.557599597 0.584026987 0.718441684 0.573624073 1 16.92089639 -9.17858905 0.431120494 1.075341058 0.529089408 0.716859555 0.082785502 2.836996362 0.610815308 0.432726084 0.050291166 6.63E-10 9.17858905 -0.54625165 GHHLPSENLGKEPLDPDPSHS(ph)PSDKVGR ddPTM_HeLa_A486_30min_R1 1 GHHLPSENLGKEPLDPDPSHSPSDKVGR 28 2 Q8NFQ8 Q8NFQ8 TOR1AIP2 Torsin-1A-interacting protein 2 1 0 GHHLPSENLGKEPLDPDPS(0.015)HS(0.791)PS(0.193)DKVGR 83.559 0.0021723 232900000 220540 144900 120930 46188 213750 187210 262160 244040 154680 240160 TRUE FALSE FALSE 205081.2849 133417.5963 167757.3346 107527.9982 186939.4819 164113.9336 196564.7952 188477.4194 168087.7869 180022.3728 1.139198877 0.741116752 0.931869367 0.597303527 1.038423608 0.911630766 1.091890925 1.046966643 0.933704985 1 17.45781669 GHHVTDS(ph)ENDEPLNLNAS(ph)DS(ph)ESEELHR ddPTM_HeLa_A485_30min_R1 3 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 0 GHHVT(0.005)DS(0.995)ENDEPLNLNAS(0.971)DS(0.866)ES(0.163)EELHR;GHHVT(0.055)DS(0.945)ENDEPLNLNAS(0.993)DS(0.796)ES(0.21)EELHR;GHHVT(0.002)DS(0.998)ENDEPLNLNAS(1)DS(0.965)ES(0.035)EELHR ;; 197.66 1.74E-28 2104140000 335030 518430 543820 339958 536160 498179 537380 531340 511790 460600 TRUE FALSE FALSE 409556.2677 579055.8788 745001.6482 358529.0447 482778.0278 524262.8821 422564.373 401028.0319 614501.5586 345780.8967 1.184438676 1.674632359 2.154548315 1.036867705 1.396196356 1.516170752 1.222058179 1.159774978 1.777141434 1 18.39949864 -5.28402183 24.99854128 1.317451212 1.671549226 0.23288471 0.30676439 1177.162388 1303104.003 0.085627523 0.127109353 5.20E-06 5.28402183 0.354098014 GHHVTDS(ph)ENDEPLNLNAS(ph)DS(ph)ESEELHR ddPTM_HeLa_A486_30min_R1 3 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 0 GHHVTDS(1)ENDEPLNLNAS(1)DS(0.97)ES(0.031)EELHR;GHHVT(0.1)DS(0.9)ENDEPLNLNAS(1)DS(0.986)ES(0.014)EELHR;GHHVT(0.019)DS(0.981)ENDEPLNLNAS(0.999)DS(0.859)ES(0.142)EELHR ;; 223.26 2.18E-38 1714240000 504008 577056 491060 142939 669790 511668 536014 534914 481663 479754 TRUE FALSE FALSE 468679.6419 531327.981 681211.583 332769.2157 585778.6927 448543.6044 401897.6278 413125.7593 523413.9367 359620.4757 1.303261837 1.477468656 1.894251382 0.925334452 1.628880256 1.247269371 1.11756047 1.148782639 1.455461999 1 18.45611564 -6.068092715 0.91118655 1.184906996 1.493199864 0.17736795 0.256911511 1.029540171 1.86300259 0.14256891 0.161287585 8.55E-07 6.068092715 0.308292867 GHKHEDGTQS(ph)DSEDPLAK ddPTM_HeLa_A485_30min_R1 2 GHKHEDGTQSDSEDPLAK 18 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 GHKHEDGT(0.321)QS(0.679)DSEDPLAK;GHKHEDGT(0.01)QS(0.99)DSEDPLAK ; 245.92 8.17E-46 907350000 1329130 851570 609530 1855110 1236110 1234320 1805930 1454840 968470 2530450 TRUE FALSE FALSE 1624790.383 951153.7038 835020.5117 1956449.962 1113038.548 1298947.087 1420078.302 1098038.209 1162833.046 1899655.384 0.855307966 0.500698027 0.439564206 1.029897306 0.585916034 0.683780383 0.74754522 0.578019686 0.612128418 1 20.85730629 -10.14930641 3.734573626 1.000201265 0.666588018 0.265095709 0.164570948 52679564.86 88280490.52 138657.8191 0.040398048 7.09E-11 10.14930641 -0.333613247 GHLENNPALEK ddPTM_HeLa_A485_30min_R1 1 GHLENNPALEK 11 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8VW21;F8VU65;F8VPE8;G3V210;F8VZS0;F8VWV4;F8VS58;F8VQY6;F8VRK7 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 0 101.6 0.0023386 15214000 38330 51473 54462 44138 72752 60231 74747 87419 56636 65381 FALSE FALSE TRUE 46856.37626 57492.31959 74609.76015 46549.14718 65508.55543 63384.60203 58776.69282 65979.35318 68002.3257 49082.71995 0.954640988 1.171335241 1.520082021 0.948381574 1.334656178 1.291383242 1.197502764 1.344248103 1.385463678 1 15.58292758 GHLLYVALSPGQHR ddPTM_HeLa_A485_30min_R1 2 GHLLYVALSPGQHR 14 0 O15067 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 0 ; ; 186.17 5.93E-11 181474000 89294 158583 164328 62366 164068 113989 141187 158016 121767 113605 FALSE FALSE TRUE 109157.1422 177127.9024 225119.7655 65772.89666 147732.8138 119957.2878 111021.2441 119262.3282 146204.52 85285.36425 1.279904743 2.076885101 2.639606074 0.771209659 1.732217657 1.406540135 1.301761973 1.398391498 1.71429789 1 16.38001056 -5.263453896 24.99999658 1.367173672 2.006607258 0.354436496 0.41039839 203.4242995 2524490.997 0.112451308 0.1765665 5.45E-06 5.263453896 0.639433587 GHLLYVALSPGQHR ddPTM_HeLa_A486_30min_R1 2 GHLLYVALSPGQHR 14 0 O15067 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 0 ; ; 174.05 8.34E-09 145803000 129617 126037 129625 17642.7 152963 116320 117448 110523 106242 102650 FALSE FALSE TRUE 120531.5176 116049.3691 179819.2715 41073.09721 133776.9542 101969.6211 88061.26816 85359.3256 115451.1421 76945.77186 1.566447574 1.508196829 2.336961046 0.533792777 1.738587462 1.32521409 1.144458832 1.109343938 1.500422171 1 16.23155443 -5.253246768 24.99715323 1.223877583 1.774301246 0.368241263 0.364422413 721.6030724 2201738.16 0.095918996 0.162513086 5.58E-06 5.253246768 0.550423662 GHLS(ph)EGLVTK ddPTM_HeLa_A486_30min_R1 1 GHLSEGLVTK 10 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 0 GHLS(1)EGLVTK 110.38 0.00053394 98108000 114200 128100 84714 48479 133490 126740 142320 141420 94348 126310 TRUE FALSE FALSE 106195.1697 117948.8895 117517.5295 112861.562 116746.4395 111104.1074 106710.0307 109221.7532 102526.1606 94681.15386 1.121608318 1.245748332 1.24119241 1.19201718 1.233048339 1.173455359 1.127046158 1.153574378 1.08285711 1 16.53078967 -7.792335497 0.633831472 0.999590759 1.211867475 0.746755368 0.037168753 0.355301688 0.33607464 0.036743005 0.016480956 1.61E-08 7.792335497 0.212276716 GHLSRPEAQSLS(ph)PYTTSANR ddPTM_HeLa_A485_30min_R1 3 GHLSRPEAQSLSPYTTSANR 20 1 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 1 0 GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQSLS(1)PYTTSANR ;; 201.31 1.39E-26 3465500000 389360 1062010 1172450 182505 1061150 667930 701050 821910 794250 366000 TRUE FALSE FALSE 475971.7887 1186202.831 1606188.045 192474.786 955498.1801 702901.782 551264.9404 620335.2838 953648.6897 274762.9357 1.732299837 4.31718648 5.845723116 0.700512191 3.477536654 2.558211791 2.006329343 2.257710932 3.470805431 1 18.06782788 -5.266115109 24.99797276 2.321379551 4.000281435 0.287030589 1.258584985 515.5758014 2756438.968 0.346349828 0.53329164 5.42E-06 5.266115109 1.678901883 GHLSRPEAQSLS(ph)PYTTSANR ddPTM_HeLa_A486_30min_R1 4 GHLSRPEAQSLSPYTTSANR 20 1 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 1 0 GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQSLS(1)PYTTSANR;GHLSRPEAQSLS(0.999)PYT(0.001)TSANR ;;; 171.72 6.82E-14 1880710000 704524 810700 1032036 61125 1081419 440561 503407 514922 765956 207682 TRUE FALSE FALSE 655140.5058 746457.1795 1431667.978 142302.0891 945777.3452 386209.0631 377449.2441 397685.5013 832349.6828 155677.0754 4.208329993 4.794907519 9.196395643 0.914085062 6.075251238 2.480834523 2.424565358 2.554554036 5.346642597 1 17.24819699 -5.275034665 24.99448499 3.121791943 5.939381028 0.337010354 1.979446262 925.9073711 1702248.152 0.541979541 0.808810098 5.31E-06 5.275034665 2.817589085 GHPDVATMLNILALVYR ddPTM_HeLa_A485_30min_R1 1 GHPDVATMLNILALVYR 17 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3;C9J8T5;Q9NSK0-4 Q9NSK0-5 KLC4 Kinesin light chain 4 0 0 96.993 0.00074899 1199600 1881 1393.5 1433.4 1304 2267.6 1141.8 1688.3 1349.1 957.02 1582.2 FALSE FALSE TRUE 2299.421961 1556.457703 1963.674309 1375.234218 2041.829782 1201.582882 1327.580913 1018.23111 1149.085136 1187.786658 1.935888019 1.310384902 1.653221389 1.157812481 1.71902064 1.011615069 1.117693067 0.857250839 0.96741711 1 10.21406002 -6.288510233 0.779858462 0.902912239 1.609691322 0.601469332 0.221473929 0.442783679 0.584714178 0.145887508 0.137114325 5.15E-07 6.288510233 0.706779083 GHPHSASS(ph)PSER ddPTM_HeLa_A485_30min_R1 2 GHPHSASSPSER 12 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 GHPHSAS(0.01)S(0.99)PSER;GHPHSAS(0.151)S(0.424)PS(0.424)ER ; 216.83 5.23E-23 3261100000 1223800 1495970 669643 796456 530041 1616150 769109 1455710 1124980 993350 TRUE FALSE FALSE 1496030.088 1670910.678 917371.8119 839964.3745 477268.257 1700769.115 604782.5791 1098694.84 1350753.167 745726.1263 2.006138762 2.24064924 1.230172552 1.126371123 0.640004742 2.280688654 0.810998244 1.473322177 1.811326061 1 19.50828636 -4.763375035 24.952755 1.301786924 2.123394181 0.344506366 0.456136476 50.03227639 645011.7178 0.115811093 0.262349718 1.72E-05 4.763375035 0.821607256 GHPHSASS(ph)PSER ddPTM_HeLa_A486_30min_R1 1 GHPHSASSPSER 12 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 GHPHSAS(0.07)S(0.465)PS(0.465)ER 156.6 3.24E-08 874050000 197610 72247 402640 19846 101020 420780 178630 130480 367130 164600 TRUE FALSE FALSE 183758.5595 66521.8846 558552.9911 46202.49096 88349.12963 368868.4418 133934.8846 100772.5524 398953.124 123383.0886 1.489333437 0.539149128 4.526981755 0.374463725 0.716055422 2.989619127 1.085520602 0.816745256 3.233450616 1 16.91278514 -10.38864567 4.120490135 0.997831695 1.716543888 0.02802547 1.314083517 883098865.2 55462.57522 18169096.86 0.307217176 4.09E-11 10.38864567 0.718712193 GHPHSASSPS(ph)ER ddPTM_HeLa_A485_30min_R1 5 GHPHSASSPSER 12 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 GHPHSAS(0.12)S(0.185)PS(0.695)ER;GHPHS(0.053)AS(0.239)S(0.239)PS(0.469)ER;GHPHSAS(0.021)S(0.235)PS(0.744)ER;GHPHSAS(0.004)S(0.232)PS(0.763)ER;GHPHS(0.001)AS(0.201)S(0.201)PS(0.598)ER ;;;; 128.85 2.42E-05 5328962900 339060 432965 259931.7 242927.6 215926.4 498142 217599.4 488610 419238 308854.8 TRUE FALSE FALSE 414482.7273 483596.4905 356091.2525 256198.1197 194428.0095 524223.9448 171107.5106 368777.6314 503375.2211 231862.9824 1.787619235 2.085699431 1.535783111 1.104954819 0.838547005 2.260921254 0.737968212 1.590498093 2.17100296 1 17.82291298 -4.898515031 5.309046278 1.392209781 1.929741918 0.162479851 0.491764575 0.360630397 15.62866328 0.128051794 0.276528754 1.26E-05 4.898515031 0.537532138 GHPHSASSPS(ph)ER ddPTM_HeLa_A486_30min_R1 2 GHPHSASSPSER 12 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 GHPHSAS(0.043)S(0.221)PS(0.736)ER;GHPHS(0.011)AS(0.129)S(0.213)PS(0.647)ER ; 134.4 1.36E-05 789970000 226789 96145.3 379444 28570.7 89686 413537 136513 127551 367654 148721 TRUE FALSE FALSE 210892.2622 88526.39627 526374.8787 66514.03348 78436.74559 362519.0095 102356.0035 98510.42172 399522.5447 111480.2936 1.891744769 0.794099059 4.721685436 0.596643867 0.703592923 3.251866297 0.918153337 0.883657717 3.583795233 1 16.76642918 GHPTQS(ph)PGYSYR ddPTM_HeLa_A485_30min_R1 1 GHPTQSPGYSYR 12 0 E7EWN3;Q9C0A6-2;Q9C0A6-3;Q9C0A6 E7EWN3 SETD5 SET domain-containing protein 5 1 0 GHPTQS(0.979)PGYS(0.021)YR 98.676 0.00089652 129290000 171910 211590 222550 178010 266300 191280 232910 247160 195570 234820 TRUE FALSE FALSE 210150.7864 236333.6099 304880.5061 187734.2356 239786.237 201295.125 183146.8758 186543.6225 234819.1051 176283.6955 1.192116978 1.34064361 1.72948783 1.064955185 1.360229239 1.141881695 1.038932587 1.058201224 1.332052317 1 17.42753952 -5.928337108 1.360175904 1.11288522 1.384997004 0.275767246 0.179380025 0.557232025 2.144599961 0.07403041 0.088960911 1.18E-06 5.928337108 0.272111784 GHQFSCVCLHGDR ddPTM_HeLa_A486_30min_R1 1 GHQFSCVCLHGDR 13 0 F1T0B3;A0A087X2G1;Q92499-3;Q92499;Q92499-2 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 0 151.99 9.77E-08 61169000 8861.7 10942 10556 1292 12307 9301.4 9578.6 9826.1 10172 10164 FALSE FALSE TRUE 8240.540592 10074.91607 14643.5659 3007.841294 10763.3413 8153.887838 7181.932968 7588.911532 11053.71715 7618.868243 1.081596417 1.322363867 1.922013274 0.394788464 1.412721806 1.070222975 0.942650895 0.996068089 1.450834533 1 12.89536099 -5.245313486 24.98311869 1.050980114 1.430028334 0.234270698 0.333780445 1277.836564 1979691.594 0.088053221 0.151914667 5.68E-06 5.245313486 0.37904822 GHQQLYWS(ph)HPR ddPTM_HeLa_A486_30min_R1 1 GHQQLYWSHPR 11 0 A0A2R8Y851;P62273;P62273-2 A0A2R8Y851 RPS29 40S ribosomal protein S29 1 0 GHQQLYWS(1)HPR 87.083 0.0015827 0 89754 101580 98618 37281 121090 92088 103860 96576 78997 76997 TRUE FALSE FALSE 83462.70809 93530.43085 136805.5307 86792.05208 105901.7631 80727.11884 77873.12948 74587.75304 85844.52357 57716.45003 1.446081802 1.620516002 2.370303971 1.503766292 1.83486273 1.398684756 1.3492363 1.292313595 1.487349335 1 15.81669495 -6.363082384 3.638497089 1.312198367 1.768973677 0.422501639 0.263698746 0.258873611 6.322120052 0.098173662 0.085839806 4.33E-07 6.363082384 0.456775309 GHQQLYWSHPR ddPTM_HeLa_A485_30min_R1 3 GHQQLYWSHPR 11 0 A0A2R8Y851;P62273;P62273-2 A0A2R8Y851 RPS29 40S ribosomal protein S29 0 0 ;; ;; 214.26 1.85E-15 1518471000 381066 588426 603258 350237 533028 546582 566474 699126 463374 474714 FALSE FALSE TRUE 465832.817 657237.3021 826428.2379 369369.5605 479957.8607 575200.1883 445442.2022 527664.2523 556368.9115 356376.5363 1.307136609 1.844221589 2.318974887 1.036458697 1.346771776 1.614023736 1.249920118 1.480636907 1.56118278 1 18.44304283 -5.274918806 24.9990931 1.356597288 1.82552213 0.368290415 0.296176539 859.7129362 1594431.171 0.083630267 0.124829827 5.31E-06 5.274918806 0.468924841 GHQQLYWSHPR ddPTM_HeLa_A486_30min_R1 2 GHQQLYWSHPR 11 0 A0A2R8Y851;P62273;P62273-2 A0A2R8Y851 RPS29 40S ribosomal protein S29 0 0 ; ; 199.7 2.44E-14 1419330000 755250 773860 743210 260373 922150 737410 731200 710660 653460 776150 FALSE FALSE TRUE 702310.8751 712536.5153 1031000.816 606161.5025 806485.3483 646435.8516 548246.0262 548858.2316 710102.4389 581796.9881 1.207140789 1.224716748 1.772097204 1.041878035 1.386197187 1.111102094 0.942332183 0.94338445 1.220533027 1 19.1501563 -6.405335589 3.992375335 1.021717647 1.329345398 0.361440653 0.190099805 0.264750643 7.285294197 0.069770779 0.060295096 3.93E-07 6.405335589 0.307627751 GHRPVS(ph)PAPGASGLRPCLWQLETELR ddPTM_HeLa_A485_30min_R1 1 GHRPVSPAPGASGLRPCLWQLETELR 26 2 Q13129 Q13129 RLF Zinc finger protein Rlf 1 0 GHRPVS(0.99)PAPGAS(0.01)GLRPCLWQLETELR 83.198 0.0026945 932900000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GHS(ph)CYRPR ddPTM_HeLa_A485_30min_R1 2 GHSCYRPR 8 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 0 GHS(1)CYRPR;GHS(1)CYRPR ; 79.489 0.0046396 101182000 52777 78541 47755 65315 44720 83513 74010 91265 59385 65089 TRUE FALSE FALSE 64517.06157 87725.68673 65421.56175 68882.99306 40267.51978 87885.61154 58197.15889 68882.11565 71303.02479 48863.51017 1.320352577 1.795321016 1.338863326 1.409702103 0.824081603 1.798593904 1.1910147 1.409684147 1.459228462 1 15.57646988 -11.20600828 1.961643738 3.79E-05 1.394346707 0.165661969 0.26532559 4307227.407 795449.0099 19077907.61 0.064504714 6.22E-12 11.20600828 1.394308774 GHS(ph)CYRPR ddPTM_HeLa_A486_30min_R1 1 GHSCYRPR 8 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 0 GHS(0.999)CY(0.001)RPR 40.994 0.036772 28126000 12787 9573.9 11371 10547 13728 12171 15198 13554 12105 13076 TRUE FALSE FALSE 11890.69733 8815.229296 15774.15573 24553.94902 12006.10623 10669.46577 11395.29965 10468.05008 13154.27115 9801.68449 1.213127942 0.899358606 1.609331105 2.505074413 1.224902336 1.088533892 1.162585846 1.067984803 1.342041887 1 13.25881399 -5.976198484 24.99879463 1.140413085 1.557458761 0.211653834 0.390015979 412.9480378 433718.3721 0.13255522 0.150296625 1.06E-06 5.976198484 0.417045676 GHS(ph)RS(ph)RS(ph)PQWR ddPTM_HeLa_A486_30min_R1 1 GHSRSRSPQWR 11 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GHS(1)RS(1)RS(1)PQWR 63.944 0.022916 880010000 257580 389830 1302400 554390 3155700 843420 1398100 2014500 568080 365420 TRUE FALSE FALSE 239524.9721 358938.4511 1806724.159 1290647.937 2759882.68 739367.4157 1048280.592 1555842.326 617321.6318 273916.4535 0.874445361 1.310393905 6.595894976 4.711830636 10.07563673 2.699244263 3.827008487 5.679988574 2.253685837 1 18.0633764 -4.703245026 8.994425254 4.874149561 1.059431786 0.246898121 2.418404669 0.402273784 57.1666933 0.603658652 1.599028228 1.98E-05 4.703245026 -3.814717775 GHSAQIAKPIRPGQHPAAS(ph)PTHPSAIR ddPTM_HeLa_A486_30min_R1 2 GHSAQIAKPIRPGQHPAASPTHPSAIR 27 2 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 0 GHSAQIAKPIRPGQHPAAS(1)PTHPSAIR;GHSAQIAKPIRPGQHPAAS(0.978)PT(0.022)HPSAIR ; 178.58 2.67E-20 1906450000 1056610 1116440 1262640 55952 1305150 840840 850110 859020 1212550 362990 TRUE FALSE FALSE 982547.0953 1027969.228 1751568.023 130259.0837 1141445.917 737105.7098 637403.4865 663439.8983 1317654.81 272094.9413 3.611045066 3.777979934 6.437341371 0.478726591 4.195028071 2.709001888 2.342577496 2.438266199 4.842628841 1 18.05375061 -5.255578577 24.98844766 2.695981713 4.525707685 0.301410788 1.410295781 648.5705608 2765274.144 0.370848725 0.62102292 5.55E-06 5.255578577 1.829725972 GHSES(ph)PEKPLEGNTCLSQMHSWAPLK ddPTM_HeLa_A486_30min_R1 1 GHSESPEKPLEGNTCLSQMHSWAPLK 26 1 Q8TEQ0;Q8TEQ0-2 Q8TEQ0 SNX29 Sorting nexin-29 1 0 GHS(0.083)ES(0.917)PEKPLEGNTCLSQMHSWAPLK 174.98 1.61E-14 436000000 212000 192520 112450 30716 191220 202630 266730 247660 183170 251190 TRUE FALSE FALSE 197139.8948 177264.0141 155993.6515 71508.4003 167235.4045 177631.5708 199991.3328 191273.2244 199047.3231 188290.389 1.046999243 0.941439523 0.828473786 0.379777219 0.888178124 0.943391597 1.062143075 1.015841676 1.057129491 1 17.52259984 -6.323278646 2.930792514 1.02984333 0.797605444 0.280368811 0.163797937 0.381451631 6.475647618 0.067319707 0.059993775 4.75E-07 6.323278646 -0.232237886 GHTDTEGRPPS(ph)PPPTS(ph)TPEK ddPTM_HeLa_A485_30min_R1 4 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 GHT(0.012)DT(0.074)EGRPPS(0.912)PPPT(0.042)S(0.47)T(0.489)PEK;GHTDTEGRPPS(1)PPPT(0.129)S(0.484)T(0.387)PEK;GHT(0.001)DT(0.022)EGRPPS(0.978)PPPT(0.071)S(0.866)T(0.063)PEK;GHT(0.001)DT(0.004)EGRPPS(0.981)PPPT(0.066)S(0.594)T(0.354)PEK ;;; 195.03 2.12E-19 5987340000 1597260 1640880 1456620 2117620 2146650 1843800 2597770 2642670 1567280 2722530 TRUE FALSE FALSE 1952564.977 1832766.642 1995484.353 2233300.219 1932921.989 1940338.517 2042735.218 1994551.039 1881818.72 2043853.375 0.955335153 0.896721195 0.976334397 1.092691015 0.945724391 0.94935309 0.999452917 0.975877753 0.920720998 1 20.96286027 -4.866511977 7.448598166 0.984107285 0.926485073 0.198003222 0.045584077 0.340666566 21.32039982 0.012269504 0.025835385 1.36E-05 4.866511977 -0.057622212 GHTDTEGRPPS(ph)PPPTS(ph)TPEK ddPTM_HeLa_A486_30min_R1 2 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 GHT(0.003)DT(0.017)EGRPPS(0.955)PPPT(0.065)S(0.669)T(0.292)PEK;GHT(0.004)DT(0.038)EGRPPS(0.952)PPPT(0.199)S(0.494)T(0.313)PEK ; 117.82 3.01E-05 3621100000 660140 647580 431821 321682 665250 692680 872070 839460 536311 970910 TRUE FALSE FALSE 613867.595 596263.4024 599033.6558 748891.9529 581808.1418 607224.1843 653868.8622 648333.2833 582798.8693 727787.8164 0.843470557 0.819281924 0.823088326 1.02899765 0.799420008 0.834342332 0.898433372 0.890827338 0.800781294 1 19.47315837 -10.35853376 4.862803759 1.000104795 0.862068216 0.294906455 0.064931139 7.36E-05 9.71E-06 0.062709143 0.015197676 4.38E-11 10.35853376 -0.138036578 GHTDTEGRPPS(ph)PPPTST(ph)PEK ddPTM_HeLa_A485_30min_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 GHTDT(0.001)EGRPPS(0.999)PPPT(0.025)S(0.293)T(0.682)PEK 201.21 7.03E-25 2708600000 767960 761080 649870 994700 997650 868440 1188200 1195700 716220 1258300 TRUE FALSE FALSE 938790.0526 850081.6855 890283.9563 1049037.942 898320.463 913910.1755 934331.3633 902452.7002 859958.7844 944628.9673 0.993818827 0.899910669 0.942469464 1.110529085 0.950977044 0.967480574 0.989098784 0.955351499 0.91036673 1 19.84938825 -9.705309948 16.85603638 0.999942128 0.969877335 0.027505785 0.05521556 0 0 0.054680584 0.01326199 1.97E-10 9.705309948 -0.030064793 GHTDTEGRPPS(ph)PPPTST(ph)PEK ddPTM_HeLa_A486_30min_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 GHTDT(0.004)EGRPPS(0.996)PPPT(0.025)S(0.289)T(0.686)PEK 182.95 1.45E-17 2189400000 799930 761480 462490 386510 783740 784300 1018500 934340 601770 1095900 TRUE FALSE FALSE 743859.0378 701137.5515 641578.5139 899814.8131 685436.0211 687541.0402 763660.5274 721611.1785 653931.9081 821479.5069 0.905511375 0.853505834 0.781003675 1.095358808 0.834392112 0.836954585 0.929616042 0.878428704 0.796041657 1 19.64786506 GHTDTEGRPPS(ph)PPPTSTPEK ddPTM_HeLa_A485_30min_R1 7 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 GHT(0.033)DT(0.209)EGRPPS(0.757)PPPT(0.001)STPEK;GHT(0.005)DT(0.003)EGRPPS(0.99)PPPT(0.002)STPEK;GHT(0.001)DT(0.025)EGRPPS(0.975)PPPTSTPEK;GHT(0.001)DT(0.005)EGRPPS(0.994)PPPTSTPEK;GHT(0.001)DT(0.007)EGRPPS(0.992)PPPTSTPEK;GHTDTEGRPPS(1)PPPTSTPEK;GHTDT(0.001)EGRPPS(0.999)PPPTSTPEK ;;;;;; 192.3 9.59E-20 14954390000 1995262 2287126 2039708 2232867 2599123 2538180 3068520 3394830 2099717 2991410 TRUE FALSE FALSE 2439101.148 2554585.49 2794280.869 2354842.87 2340345.188 2671075.18 2412905.634 2562242.62 2521110.942 2245706.54 1.086117489 1.137541992 1.244276943 1.04859777 1.042142037 1.18941417 1.07445278 1.140951667 1.122635971 1 21.09873798 -10.5628421 2.385678153 0.988985569 1.121640296 0.270072485 0.059500878 4067778.029 3418590.035 284127.4066 0.015879629 2.74E-11 10.5628421 0.132654727 GHTDTEGRPPS(ph)PPPTSTPEK ddPTM_HeLa_A486_30min_R1 7 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 GHT(0.001)DT(0.001)EGRPPS(0.998)PPPTSTPEK;GHTDT(0.001)EGRPPS(0.999)PPPTSTPEK;GHTDTEGRPPS(1)PPPTSTPEK;GHT(0.044)DT(0.028)EGRPPS(0.927)PPPTSTPEK;GHTDTEGRPPS(1)PPPTSTPEK;GHT(0.005)DT(0.005)EGRPPS(0.976)PPPT(0.012)S(0.001)T(0.002)PEK;GHT(0.005)DT(0.009)EGRPPS(0.984)PPPT(0.002)STPEK ;;;;;; 202.2 1.30E-26 14051100000 2322650 2198140 1548180 965489 2300770 2356420 2623970 2541250 1844030 2949170 TRUE FALSE FALSE 2159844.229 2023951.381 2147676.758 2247707.185 2012185.973 2065708.859 1967424.952 1962662.85 2003872.005 2210678.636 0.977005067 0.915533967 0.971501114 1.016749856 0.910211887 0.934422953 0.889964249 0.887810113 0.906451065 1 21.07605789 -5.810348478 24.99865313 0.91493883 0.966386277 0.273037452 0.037855639 140.4663024 71794.93465 0.011644672 0.013203847 1.55E-06 5.810348478 0.051447447 GHTESCSCPLQQS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GHTESCSCPLQQSPR 15 0 C9JGT3;G5E9C5;O76074-2;O76074 C9JGT3 PDE5A "cGMP-specific 3,5-cyclic phosphodiesterase" 1 0 GHTESCSCPLQQS(1)PR 128.92 1.58E-05 0 87908 109190 122640 67853 150380 99271 102480 108270 102230 101890 TRUE FALSE FALSE 107462.8313 121958.8207 168009.6395 71559.63758 135407.6392 104468.6761 80584.31082 81716.61274 122746.6233 76490.69815 1.404913721 1.594426821 2.196471513 0.935533853 1.770249749 1.365769676 1.053517784 1.068320916 1.604726147 1 16.2229967 -6.5110028 6.651122535 1.189229381 1.579195161 0.242848706 0.332270798 0.228043674 49.05957268 0.120669905 0.099933027 3.08E-07 6.5110028 0.38996578 GHTESCSCPLQQS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GHTESCSCPLQQSPR 15 0 C9JGT3;G5E9C5;O76074-2;O76074 C9JGT3 PDE5A "cGMP-specific 3,5-cyclic phosphodiesterase" 1 0 GHTESCSCPLQQS(1)PR 155.49 1.80E-08 320080000 80549 111140 108300 8193.9 131150 79985 86317 109260 99683 77462 TRUE FALSE FALSE 74902.93106 102332.8616 150236.6604 19075.8133 114699.9441 70117.26393 64719.57363 84383.88313 108323.6027 58065.01101 1.289983929 1.762384263 2.587387099 0.328525096 1.97537109 1.207564809 1.11460538 1.453265601 1.865557258 1 15.82538146 -5.242992132 24.99156831 1.316061328 1.868164822 0.214684542 0.523994547 1393.443797 1887777.512 0.138165951 0.238755971 5.71E-06 5.242992132 0.552103494 GHTGGHHS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 GHTGGHHSPVK 11 0 H7C280;A0A0A0MQU4;Q96I15-2;Q96I15 H7C280 SCLY Selenocysteine lyase 1 0 GHT(0.042)GGHHS(0.958)PVK;GHT(0.003)GGHHS(0.997)PVK ; 75.088 0.0069812 30242000 65185 17841.9 29142 12287.5 16204.3 66410 34550 29984 90473 82142 TRUE FALSE FALSE 60615.86812 16428.04286 40426.56285 28605.92098 14171.80559 58217.00941 25905.22457 23157.29775 98315.27249 61573.10855 0.984453596 0.266805481 0.656561993 0.464584648 0.230162256 0.945494077 0.420723026 0.376094342 1.5967242 1 15.91001279 -7.754980363 24.99999822 1.298362182 0.533965612 0.541691627 0.277776445 94.84528261 367114.8451 0.184933476 0.066164878 1.76E-08 7.754980363 -0.76439657 GHVS(ph)PQVELPPYLER ddPTM_HeLa_A485_30min_R1 1 GHVSPQVELPPYLER 15 0 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 0 GHVS(1)PQVELPPYLER 66.12 0.010495 68861000 31307 47975 53161 30816 59055 41344 53893 63851 48383 46151 TRUE FALSE FALSE 38271.13414 53585.25892 72827.46611 32499.40005 53175.27685 43508.70791 42378.32028 48191.44214 58093.0243 34646.40505 1.104620641 1.546632583 2.102020859 0.938030945 1.534799261 1.255792855 1.223166451 1.390950723 1.676740321 1 15.08041804 -5.282947921 24.9965312 1.310964673 1.580645704 0.161476368 0.306008431 1559.793642 1812737.852 0.085573532 0.127056958 5.21E-06 5.282947921 0.269681031 GHYAYDCHR ddPTM_HeLa_A485_30min_R1 3 GHYAYDCHR 9 0 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ;; ;; 104.17 0.0043425 184503000 43231 65818 70427 40790 64489 60928 58859 65184 58458 53005 FALSE FALSE TRUE 52847.5868 73514.84256 96480.87801 43018.25441 58068.24873 64118.09587 46283.29382 49197.5218 70189.98439 39791.82898 1.328101476 1.847485889 2.424640447 1.081082612 1.459300821 1.611338245 1.163135623 1.236372468 1.763929585 1 15.28018459 -5.283656586 24.9986217 1.35065106 1.864817096 0.353945677 0.331085067 880.861841 991136.6793 0.093034632 0.138114011 5.20E-06 5.283656586 0.514166037 GHYAYDCHR ddPTM_HeLa_A486_30min_R1 2 GHYAYDCHR 9 0 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ; ; 90.629 0.012038 85820000 34239 38523 32972 9678.1 36889 30470 32982 33847 31139 32084 FALSE FALSE TRUE 31839.02291 35470.29718 45739.64142 22531.1059 32262.03764 26710.9212 24729.55475 26140.77697 33838.15359 24049.95757 1.323870232 1.474859034 1.901859548 0.936845973 1.341459233 1.110643174 1.028257729 1.086936511 1.406994316 1 14.55374673 -5.273805143 24.99821575 1.13752948 1.557662568 0.520336267 0.191988721 593.6949024 1200192.666 0.053439511 0.079904496 5.32E-06 5.273805143 0.420133088 GHYEVT(ph)GSDDETGKLQGSGVSLASK ddPTM_HeLa_A485_30min_R1 1 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHY(0.164)EVT(0.324)GS(0.324)DDET(0.187)GKLQGSGVSLASK 90.616 0.0036539 19113000 11921 10416 7412.7 20652 14179 12641 18755 12553 12036 32158 TRUE FALSE FALSE 14572.78532 11634.06059 10154.9662 21780.16647 12767.28897 13302.86321 14747.84104 9474.357068 14451.5148 24141.60242 0.603637864 0.481909212 0.420641763 0.90218396 0.528850105 0.551034806 0.610889069 0.392449387 0.598614564 1 14.55923382 -8.04443451 23.21560384 1.000000002 0.56129255 0.492609919 0.132744114 3911.747853 2043759.333 0.128504612 0.033179748 9.03E-09 8.04443451 -0.438707452 GHYEVT(ph)GSDDETGKLQGSGVSLASK ddPTM_HeLa_A486_30min_R1 10 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.498)GS(0.498)DDET(0.003)GKLQGSGVSLASK;GHYEVT(0.568)GS(0.432)DDETGKLQGSGVSLASK;GHY(0.034)EVT(0.449)GS(0.449)DDET(0.068)GKLQGSGVSLASK;GHYEVT(0.593)GS(0.401)DDET(0.006)GKLQGSGVSLASK;GHYEVT(0.5)GS(0.5)DDETGKLQGSGVSLASK;GHY(0.233)EVT(0.27)GS(0.27)DDET(0.227)GKLQGSGVSLASK;GHYEVT(0.769)GS(0.231)DDETGKLQGSGVSLASK;GHYEVT(0.499)GS(0.499)DDET(0.003)GKLQGSGVSLASK;GHY(0.275)EVT(0.318)GS(0.318)DDET(0.085)GKLQGS(0.004)GVSLASK;GHY(0.046)EVT(0.438)GS(0.438)DDET(0.078)GKLQGSGVSLASK ;;;;;;;;; 299.72 1.24E-89 19786199000 4823607 5763769 3056239 2838566 5325728 6865797 8316010 7323490 4560263 7873318 TRUE FALSE FALSE 4485497.058 5307026.953 4239696.59 6608325.101 4657725.534 6018764.772 6235256.34 5656091.198 4955550.269 5901787.926 0.760023422 0.899223595 0.718374947 1.119715785 0.789205846 1.019820578 1.056502948 0.958369102 0.839669322 1 22.49272065 -5.245591253 24.99553492 0.965572892 0.803208954 0.390495209 0.100720364 900.8399364 1420795.464 0.02647715 0.045674421 5.68E-06 5.245591253 -0.162363938 GHYEVT(ph)GSDDETGKLQGSGVSLASKK ddPTM_HeLa_A485_30min_R1 1 GHYEVTGSDDETGKLQGSGVSLASKK 26 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.602)GS(0.398)DDETGKLQGSGVSLASKK 206.32 1.82E-28 352630000 186270 146410 60476 184930 193450 264000 368040 432440 124620 290310 TRUE FALSE FALSE 227705.1189 163531.3759 82848.58902 195032.2576 174189.4388 277822.6318 289405.2474 326383.412 149630.0909 217941.0598 1.044801375 0.750346796 0.380142177 0.894885332 0.799250214 1.274760397 1.32790603 1.497576511 0.686562188 1 17.7335785 -6.20696286 5.495758454 1.199057542 0.753411764 0.351489325 0.256805461 0.218621818 14.77987862 0.086503259 0.08565899 6.21E-07 6.20696286 -0.445645778 GHYEVT(ph)GSDDETGKLQGSGVSLASKK ddPTM_HeLa_A486_30min_R1 1 GHYEVTGSDDETGKLQGSGVSLASKK 26 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.586)GS(0.414)DDETGKLQGSGVSLASKK 152.49 3.03E-09 2058700000 1061200 766690 337560 572490 1118200 954370 1504600 1507500 445660 1864600 TRUE FALSE FALSE 986815.36 705934.6922 468272.2722 1332785.652 977944.9292 836629.5327 1128133.166 1164275.158 484290.1676 1397692.023 0.706032047 0.505071704 0.335032514 0.95356175 0.699685562 0.598579314 0.807140019 0.832998357 0.346492761 1 20.41461507 -5.255299578 24.9860043 0.735574022 0.514348067 0.232498728 0.192996274 770.653689 3136175.86 0.051381439 0.08618826 5.56E-06 5.255299578 -0.221225955 GHYEVTGS(ph)DDETGK ddPTM_HeLa_A485_30min_R1 6 GHYEVTGSDDETGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.116)GS(0.884)DDETGK;GHYEVT(0.064)GS(0.931)DDET(0.005)GK;GHYEVT(0.033)GS(0.967)DDETGK;GHYEVTGS(1)DDETGK;GHYEVTGS(1)DDETGK;GHYEVT(0.001)GS(0.999)DDETGK ;;;;; 300.84 3.26E-58 6092320000 4433370 2642720 2329090 7539550 3674190 2728810 4330730 2731290 3278940 9516800 TRUE FALSE FALSE 5419557.862 2951763.115 3190717.313 7951416.525 3308374.743 2871686.272 3405434.157 2061436.845 3936993.182 7144436.904 0.75857033 0.41315546 0.44660165 1.112952166 0.463070048 0.401947181 0.476655362 0.288537343 0.55105717 1 22.76838888 -9.235419684 4.897776397 0.999999175 0.539428214 0.273039218 0.222096388 3786136.449 15011342.53 0.239720908 0.057714705 5.82E-10 9.235419684 -0.460570961 GHYEVTGS(ph)DDETGK ddPTM_HeLa_A486_30min_R1 6 GHYEVTGSDDETGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVTGS(1)DDETGK;GHYEVT(0.003)GS(0.997)DDETGK;GHYEVT(0.272)GS(0.728)DDETGK;GHYEVTGS(1)DDETGK;GHYEVTGS(1)DDETGK;GHYEVTGS(1)DDETGK ;;;;; 275.74 4.78E-49 11393530000 5055360 7074910 3904020 2775270 5613490 8033800 8571600 7384730 6192730 8228400 TRUE FALSE FALSE 4701005.37 6514268.365 5415761.097 6460968.814 4909393.74 7042671.438 6426895.019 5703388.187 6729520.823 6167955.082 0.762165954 1.05614718 0.878048077 1.047505815 0.795951604 1.141816266 1.041981489 0.924680564 1.091045692 1 22.55636083 -6.26760404 24.99497083 1.035327123 0.922286498 0.28734577 0.102534946 752.7617657 3052107.196 0.033941756 0.030644535 5.40E-07 6.26760404 -0.113040625 GHYEVTGS(ph)DDETGKLQGS(ph)GVSLASKK ddPTM_HeLa_A485_30min_R1 1 GHYEVTGSDDETGKLQGSGVSLASKK 26 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GHYEVT(0.444)GS(0.556)DDETGKLQGS(0.472)GVS(0.335)LAS(0.193)KK 79.911 0.0047476 252100000 40853 17759 12373 76296 31723 23233 64757 52818 36023 144310 TRUE FALSE FALSE 49940.60891 19835.76057 16950.28758 80463.85729 28564.54673 24449.44395 50921.13793 39864.30268 43252.48568 108336.1728 0.460978154 0.183094529 0.156460092 0.742723831 0.263665828 0.22568126 0.470028953 0.367968534 0.399243249 1 16.72515551 -14 0.32120584 7.129814282 0.332612391 0.578681788 0.163586298 237.2145149 2.102103636 988.3342721 0.147411936 1.00E-14 14 -6.797201891 GHYEVTGS(ph)DDETGKLQGSGVS(ph)LASKK ddPTM_HeLa_A486_30min_R1 1 GHYEVTGSDDETGKLQGSGVSLASKK 26 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GHY(0.001)EVT(0.444)GS(0.556)DDET(0.052)GKLQGS(0.123)GVS(0.529)LAS(0.297)KK 84.58 0.0035335 406580000 222160 179110 56404 206750 107210 347640 515280 548050 136440 511660 TRUE FALSE FALSE 206587.7312 164916.6713 78245.13935 481324.4486 93762.72211 304751.7113 386351.4939 423270.9788 148266.7291 383537.0057 0.538638327 0.429988942 0.204009361 1.254962211 0.244468515 0.794582288 1.007338244 1.103598799 0.386577376 1 18.54900626 -5.485126062 0.754990377 0.863999958 0.389938336 0.182448737 0.327864436 1.432540069 1.603255184 0.171651904 0.437201743 3.27E-06 5.485126062 -0.474061622 GHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_HeLa_A485_30min_R1 5 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.005)GS(0.994)DDETGKLQGSGVSLASK;GHYEVT(0.126)GS(0.873)DDET(0.001)GKLQGSGVSLASK;GHYEVT(0.16)GS(0.84)DDETGKLQGSGVSLASK;GHYEVT(0.006)GS(0.99)DDET(0.003)GKLQGSGVSLASK;GHYEVT(0.026)GS(0.973)DDET(0.001)GKLQGSGVSLASK ;;;; 276.19 1.63E-75 12718880000 737246 453367 341784 1158706 791535 633120 946472 742610 659818 1718910 TRUE FALSE FALSE 901243.8292 506384.3269 468224.1244 1222003.175 712726.9962 666269.1842 744250.5252 560483.7331 792237.4204 1290417.371 0.69841266 0.392419025 0.362847041 0.946982893 0.552322847 0.516320687 0.576751787 0.434342985 0.613938899 1 20.29940633 -8.038449476 21.69950276 1.000000005 0.557410179 0.403817614 0.159361022 1199.50769 676959.539 0.155226888 0.04007941 9.15E-09 8.038449476 -0.442589827 GHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_HeLa_A486_30min_R1 3 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.033)GS(0.962)DDET(0.005)GKLQGSGVSLASK;GHYEVT(0.111)GS(0.889)DDETGKLQGSGVSLASK;GHYEVT(0.015)GS(0.985)DDETGKLQGSGVSLASK ;; 348.33 3.80E-142 13206500000 3316480 3665630 1881710 1770460 3084000 4230200 5175260 4692560 2942310 5075730 TRUE FALSE FALSE 3084011.878 3375152.129 2610358.506 4121720.354 2697175.963 3708320.934 3880355.21 3624166.526 3197351.8 3804734.171 0.810572235 0.887092758 0.686081705 1.083313622 0.708899976 0.974659665 1.019875512 0.952541324 0.840361417 1 21.85936423 GHYEVTGS(ph)DDETGKLQGSGVSLASKK ddPTM_HeLa_A485_30min_R1 3 GHYEVTGSDDETGKLQGSGVSLASKK 26 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.021)GS(0.979)DDETGKLQGSGVSLASKK;GHYEVT(0.001)GS(0.999)DDETGKLQGSGVSLASKK;GHYEVT(0.138)GS(0.862)DDETGKLQGSGVSLASKK ;; 361.34 1.17E-143 9131500000 1338687 1259298 664706 1437164 1694161 2143095 2961547 3503560 1228153 2572153 TRUE FALSE FALSE 1636473.305 1406561.947 910608.4101 1515672.63 1525484.382 2255304.14 2328788.29 2644306.417 1474632.042 1930962.594 0.84749094 0.728425269 0.471582626 0.784931119 0.790012394 1.16796884 1.206024548 1.369423947 0.763677166 1 20.88088879 -6.14868279 3.270780646 1.13219439 0.698855505 0.540534384 0.173319817 0.18729489 3.775852658 0.06044041 0.060372365 7.10E-07 6.14868279 -0.433338885 GHYEVTGS(ph)DDETGKLQGSGVSLASKK ddPTM_HeLa_A486_30min_R1 4 GHYEVTGSDDETGKLQGSGVSLASKK 26 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVT(0.059)GS(0.693)DDET(0.247)GKLQGSGVSLASKK;GHYEVTGS(1)DDETGKLQGSGVSLASKK;GHYEVT(0.145)GS(0.855)DDETGKLQGSGVSLASKK;GHYEVT(0.049)GS(0.95)DDET(0.001)GKLQGSGVSLASKK ;;; 221.72 1.46E-38 5369390000 1370062 1163454 468774 885470 1441849 1324450 2199500 2140150 761378 2477680 TRUE FALSE FALSE 1274027.729 1071257.668 650295.847 2061418.909 1260998.854 1161052.825 1649161.836 1652884.564 827374.8581 1857252.801 0.685974321 0.576796905 0.350138574 1.109929089 0.678959188 0.625145281 0.887957652 0.889962079 0.445483166 1 20.82473877 -14 0.040449499 2.186853619 1.57E-10 0.140482721 0.213795267 1665.784896 5.019720371 246.0610347 72.87664423 1.00E-14 14 -2.186853619 GHYEVTGSDDET(ph)GKLQGSGVSLASK ddPTM_HeLa_A485_30min_R1 2 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHY(0.225)EVT(0.244)GS(0.244)DDET(0.287)GKLQGSGVSLASK;GHY(0.219)EVT(0.249)GS(0.249)DDET(0.283)GKLQGSGVSLASK ; 59.678 0.027112 8892614000 241690 174440 123400 336790 223540 171840 306490 227560 167090 461180 TRUE FALSE FALSE 295453.1067 194839.2406 169050.7951 355187.9849 201283.5727 180837.2767 241005.9077 171750.5532 200623.4304 346216.3134 0.853377196 0.56276736 0.488280848 1.025913486 0.58138096 0.52232454 0.696113668 0.496078742 0.579474226 1 18.40131418 -10.39136358 4.900849394 1.000373595 0.640882138 0.296843167 0.163761452 0.000664945 8.26E-05 0.157723727 0.038214557 4.06E-11 10.39136358 -0.359491458 GHYT(ph)EGAELVDSVLDVVR ddPTM_HeLa_A486_30min_R1 1 GHYTEGAELVDSVLDVVR 18 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;A0A0B4J269 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain 1 0 GHY(0.446)T(0.554)EGAELVDSVLDVVR 123.97 1.69E-05 9492600 10066 13598 12882 8378.1 15776 14127 15123 12595 17380 14513 TRUE FALSE FALSE 9360.425381 12520.44496 17870.25539 19504.64021 13797.22697 12384.15437 11339.06545 9727.393447 18886.51239 10878.85034 0.860424134 1.150897804 1.642660285 1.792895352 1.268261493 1.138369772 1.042303653 0.894156381 1.73607613 1 13.40923848 -5.999269762 24.99985301 1.154211586 1.387209199 0.078620006 0.317164423 64.61403384 2211921.411 0.103896986 0.116789175 1.00E-06 5.999269762 0.232997613 GHYTEGAELVDS(ph)VLDVVR ddPTM_HeLa_A486_30min_R1 1 GHYTEGAELVDSVLDVVR 18 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;A0A0B4J269 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain 1 0 GHYTEGAELVDS(1)VLDVVR 66.965 0.0062924 8003700 6396.6 9088 9006.8 1863.8 11790 9622.4 9235.5 9327.4 9414.6 5954.1 TRUE FALSE FALSE 5948.231372 8367.833782 12494.47417 4339.020591 10311.18826 8435.286121 6924.680217 7203.754636 10230.66511 4463.154605 1.332741502 1.8748698 2.799471512 0.972186934 2.310291526 1.889982953 1.551521475 1.614049988 2.292249768 1 12.12384807 -10.73060553 2.81333906 0.851659415 1.850719723 0.206249891 0.499405978 67720528.98 53615279.68 70085543.99 0.122605179 1.86E-11 10.73060553 0.999060308 GHYTEGAELVDSVLDVVR ddPTM_HeLa_A485_30min_R1 7 GHYTEGAELVDSVLDVVR 18 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;A0A0B4J269 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain 0 0 ;;;;;; ;;;;;; 331.48 2.22E-103 1035687000 441851 598558 670586 404450 698903 592651 697733 733659 561596 635365 FALSE FALSE TRUE 540139.2306 668554.1513 918663.6668 426544.0794 629317.7633 623681.2899 548656.6446 553727.9799 674303.1659 476980.1985 1.132414369 1.401639216 1.92599959 0.894259512 1.319379222 1.307562226 1.150271324 1.160903496 1.413692157 1 18.86356985 -5.28145658 24.98677316 1.194846702 1.478180016 0.270556788 0.230980173 1130.521061 1411187.4 0.064724944 0.096145599 5.23E-06 5.28145658 0.283333314 GHYTEGAELVDSVLDVVR ddPTM_HeLa_A486_30min_R1 6 GHYTEGAELVDSVLDVVR 18 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;A0A0B4J269 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain 0 0 ;;;;; ;;;;; 281.68 8.86E-69 803798000 486620 577754 619133 125445.7 850198 563306 645584 658897 593129 547531 FALSE FALSE TRUE 452510.4509 531970.6689 858877.8786 292043.9293 743558.2391 493811.033 484052.0549 508880.5367 644541.8993 410425.6738 1.102539339 1.296143743 2.092651443 0.711563501 1.811675747 1.20316799 1.179390291 1.239884757 1.570422955 1 18.64676145 -5.270725126 24.99880545 1.274268152 1.477014756 0.086312335 0.365454271 2002.053524 5389866.341 0.099685349 0.150218719 5.36E-06 5.270725126 0.202746604 GHYTEGAELVDSVLDVVRK ddPTM_HeLa_A485_30min_R1 3 GHYTEGAELVDSVLDVVRK 19 1 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;A0A0B4J269 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain 0 0 ;; ;; 286.14 9.29E-72 334617000 197762 370698 258266 112246 344674 413139 498980 856097 249126 217077 FALSE FALSE TRUE 241753.4746 414047.9065 353809.3407 118377.7148 310357.0463 434770.3192 392368.8467 646137.8684 299123.3031 162963.6989 1.483480531 2.540737043 2.171092968 0.726405424 1.904455093 2.667896729 2.40770705 3.964919014 1.835521071 1 17.31419111 -6.200624469 5.556639587 2.562318982 1.765375085 0.099676763 0.831024322 0.39681702 25.5130225 0.274127238 0.272219783 6.30E-07 6.200624469 -0.796943897 GHYTEGAELVDSVLDVVRK ddPTM_HeLa_A486_30min_R1 2 GHYTEGAELVDSVLDVVRK 19 1 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;A0A0B4J269 TUBB;TUBB4B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain 0 0 ; ; 156.11 5.86E-12 24593000 28005 22520.2 22362 5246 39298 21082 30282 31486 17852 27432 FALSE FALSE TRUE 26041.99412 20735.61733 31021.16528 12212.95312 34368.8784 18481.11719 22705.12331 24317.32513 19399.42573 20562.84865 1.266458484 1.008401982 1.508602519 0.593932938 1.671406476 0.898762497 1.104181804 1.182585426 0.943421122 1 14.32775252 -7.390339916 0.685169695 0.986451311 1.173269435 0.050719466 0.28644649 2.542810788 2.419253448 0.254746126 0.121660657 4.07E-08 7.390339916 0.186818124 GHYTIGK ddPTM_HeLa_A485_30min_R1 3 GHYTIGK 7 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;P68363;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 119.89 0.0024372 476332000 878950 1148470 1102810 720310 1393550 1122830 1381850 1416130 1093780 1181820 FALSE FALSE TRUE 1074469.395 1282773.576 1510785.311 759658.7114 1254803.269 1181619.643 1086606.459 1068821.897 1313291.613 887214.0238 1.211059977 1.445844567 1.702842009 0.856229378 1.414318569 1.331831566 1.22473995 1.204694548 1.480242172 1 19.75892264 -12.61893082 0.302657997 5.71E-35 1.335373372 0.160663481 0.212513556 208.4217947 4.195837811 131.467376 0.212254894 2.40E-13 12.61893082 1.335373372 GHYTIGK ddPTM_HeLa_A486_30min_R1 1 GHYTIGK 7 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;P68363;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 110.36 0.0046557 16846000 53187 60093 52601 4379.5 69043 54551 59413 57489 55326 43393 FALSE FALSE TRUE 49458.86596 55331.01183 72969.5159 10195.69733 60382.98314 47821.05225 44547.23899 44400.00968 60121.70223 32527.11036 1.520542877 1.701073696 2.243344555 0.313452293 1.856389408 1.470190611 1.369541853 1.365015496 1.848356696 1 14.98935504 -11.14598451 1.995938504 8.60E-05 1.511256794 0.096335401 0.477777589 6405930.617 1360164.253 28982778.36 0.118964031 7.15E-12 11.14598451 1.511170807 GIAPAS(ph)PMLGNASNPNKADIPER ddPTM_HeLa_A485_30min_R1 2 GIAPASPMLGNASNPNKADIPER 23 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YKP9;H0YIY6;P27448-6;P27448-7 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 GIAPAS(0.997)PMLGNAS(0.003)NPNKADIPER;GIAPAS(1)PMLGNASNPNKADIPER ; 131.95 1.06E-06 1016720000 667210 809580 700700 611850 891160 959730 1040300 1239330 658480 1039850 TRUE FALSE FALSE 815628.5627 904253.3386 959918.0886 645273.8162 802432.9813 1009979.979 818031.4065 935382.3743 790630.8961 780634.532 1.044827674 1.158356826 1.229663881 0.826601681 1.027924014 1.293793622 1.047905739 1.198233406 1.012805434 1 19.57428776 -7.964779735 23.98875931 0.999999688 1.102412739 0.08997855 0.123708609 246.8332183 168119.0284 0.121349529 0.031332314 1.08E-08 7.964779735 0.102413051 GIAPAS(ph)PMLGNASNPNKADIPER ddPTM_HeLa_A486_30min_R1 1 GIAPASPMLGNASNPNKADIPER 23 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YKP9;H0YIY6;P27448-6;P27448-7 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 GIAPAS(1)PMLGNASNPNKADIPER 110.01 9.75E-05 342810000 265540 254300 199820 90757 293900 207580 272390 266290 218250 337240 TRUE FALSE FALSE 246927.0172 234148.3419 277195.6554 211286.8826 257036.3215 181970.8901 204235.141 205661.5801 237168.0857 252792.9089 0.976795664 0.926245688 1.096532559 0.835810164 1.016786122 0.719841751 0.807914834 0.813557552 0.938191212 1 17.94759647 -6.238849738 24.96992261 0.841249257 0.967505501 0.261577657 0.094565457 989.4440143 1093702.971 0.030103955 0.03008386 5.77E-07 6.238849738 0.126256244 GIASTSDPPTANIKPTPVVS(ph)TPSK ddPTM_HeLa_A486_30min_R1 1 GIASTSDPPTANIKPTPVVSTPSK 24 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 GIASTSDPPTANIKPT(0.094)PVVS(0.453)T(0.453)PSK 140.42 1.74E-07 1254500000 1346900 1314600 594770 526670 1014300 1469300 1651700 1505900 1077400 1605700 TRUE FALSE FALSE 1252489.265 1210426.308 825080.8725 1226114.376 887077.036 1288032.705 1238427.19 1163039.444 1170789.899 1203622.269 1.040599944 1.005652969 0.685498178 1.018687015 0.737006168 1.070130338 1.028916814 0.966282757 0.972722032 1 20.19895127 GIASTSDPPTANIKPTPVVS(ph)TPSKVTAAAMAGNK ddPTM_HeLa_A486_30min_R1 1 GIASTSDPPTANIKPTPVVSTPSKVTAAAMAGNK 34 2 P12270 P12270 TPR Nucleoprotein TPR 1 0 GIASTSDPPTANIKPTPVVS(0.499)T(0.499)PS(0.001)KVTAAAMAGNK 193.62 7.50E-22 378650000 496320 445500 181230 174840 399630 468470 665930 646470 294980 730790 TRUE FALSE FALSE 461530.531 410196.9575 251407.1095 407036.3559 349504.679 410674.9345 499307.2705 499282.8933 320549.1039 547795.4274 0.842523519 0.748814132 0.458943425 0.743044457 0.638020439 0.749686679 0.911484919 0.911440418 0.585162066 1 19.0632777 -6.546296791 5.685395809 0.844010842 0.681179005 0.245835683 0.136451179 0.261737965 26.06839441 0.052063965 0.041025163 2.84E-07 6.546296791 -0.162831837 GIASTSDPPTANIKPTPVVST(ph)PSK ddPTM_HeLa_A485_30min_R1 1 GIASTSDPPTANIKPTPVVSTPSK 24 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 GIASTSDPPTANIKPTPVVS(0.006)T(0.959)PS(0.034)K 147.25 3.52E-09 1197400000 890300 581050 601730 1180800 821030 762080 1003800 786570 679360 1519000 TRUE FALSE FALSE 1088344.164 648998.743 824334.9671 1245304.114 739285.3704 801981.3304 789329.9297 593662.4742 815701.3205 1140341.255 0.954402166 0.569126777 0.722884455 1.09204513 0.648301872 0.70328187 0.692187471 0.520600716 0.715313348 1 20.12103419 GIASTSDPPTANIKPTPVVST(ph)PSK ddPTM_HeLa_A486_30min_R1 1 GIASTSDPPTANIKPTPVVSTPSK 24 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 GIASTSDPPTANIKPT(0.039)PVVS(0.182)T(0.779)PSK 127.24 5.94E-06 914130000 1020700 1027200 529260 359710 802730 1058400 1234500 1072000 694640 1225600 TRUE FALSE FALSE 949154.2009 945800.931 734203.6461 837423.0587 702044.1182 927825.369 925615.0428 827929.0016 754851.9545 918701.7827 1.033147229 1.02949722 0.799175162 0.911528719 0.764169757 1.009930955 1.007525032 0.901194509 0.821650691 1 19.8092371 -4.687309481 13.03283208 0.901435967 1.03163878 0.281179979 0.082773063 1.122456381 194.0005218 0.021526585 0.056968307 2.05E-05 4.687309481 0.130202813 GIAYIEFK ddPTM_HeLa_A486_30min_R1 1 GIAYIEFK 8 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 141.78 0.00082013 92393000 229410 254830 170140 92388 250140 247840 275270 261730 209860 291880 FALSE FALSE TRUE 213329.5437 234636.3427 236022.7645 215083.933 218765.1087 217264.0207 206394.5345 202139.7925 228050.8338 218791.3482 0.975036469 1.072420572 1.078757302 0.983055019 0.999880071 0.993019251 0.943339562 0.923892988 1.042321077 1 17.73919616 -5.323909076 9.202758365 0.979773636 1.045052816 0.303543527 0.040185076 0.496928104 70.53943587 0.011471342 0.017042572 4.74E-06 5.323909076 0.06527918 GICFIR ddPTM_HeLa_A485_30min_R1 2 GICFIR 6 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 135.18 0.014318 182051000 216760 331280 357660 228890 351440 311780 356310 381890 295990 304980 FALSE FALSE TRUE 264977.5142 370020.3142 489973.3175 241393.6811 316449.3996 328104.3187 280181.4577 288230.8787 355392.478 228954.0987 1.157339028 1.616133174 2.14005043 1.054332211 1.382152149 1.433057196 1.223745105 1.258902463 1.552243353 1 17.80469887 -5.297403014 24.99986113 1.292131462 1.635670947 0.276748006 0.269606068 790.2233759 549316.3251 0.075728295 0.112327046 5.04E-06 5.297403014 0.343539485 GIEFEDES(ph)SDRDARPALETQPQQEK ddPTM_HeLa_A485_30min_R1 1 GIEFEDESSDRDARPALETQPQQEK 25 2 D6RB01;Q9Y6X4 D6RB01 FAM169A Soluble lamin-associated protein of 75 kDa 1 0 GIEFEDES(0.5)S(0.5)DRDARPALETQPQQEK 115.54 9.19E-05 131710000 68421 69241 62946 82104 100990 69785 99652 91225 74554 137040 TRUE FALSE FALSE 83641.0154 77338.13263 86232.3448 86589.13362 90935.081 73438.83469 78360.53612 68851.92571 89516.30395 102878.45 0.813008121 0.751742786 0.838196384 0.841664446 0.883907961 0.713840796 0.761680761 0.669255084 0.870117152 1 16.65058129 -6.257297542 24.98815191 0.779726078 0.823175702 0 0.091117176 1269.251014 7657538.895 0.029407434 0.028437986 5.53E-07 6.257297542 0.043449624 GIEFEDESS(ph)DRDARPALETQPQQEK ddPTM_HeLa_A486_30min_R1 1 GIEFEDESSDRDARPALETQPQQEK 25 2 D6RB01;Q9Y6X4 D6RB01 FAM169A Soluble lamin-associated protein of 75 kDa 1 0 GIEFEDES(0.082)S(0.918)DRDARPALETQPQQEK 135.91 1.16E-06 84652000 66196 64258 54329 30955 71285 65304 85343 85178 60435 83854 TRUE FALSE FALSE 61556.00224 59165.96206 75366.64378 72064.80438 62343.77059 57247.45644 63989.27873 65784.82882 65673.55446 62856.4126 0.979311413 0.941287605 1.199028717 1.146498844 0.991844237 0.91076557 1.01802308 1.046588981 1.044818687 1 15.93977232 -5.866020383 18.6184946 1.00055929 1.067401179 0.142991105 0.077312513 4.31785575 749.3851815 0.026597908 0.03015942 1.36E-06 5.866020383 0.066841889 GIEHQDSQHSFLAFLNTPTDALDQFETVDS(ph)TPLSVHTPTLR ddPTM_HeLa_A486_30min_R1 2 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHTPTLR 41 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6 H0Y7V8 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 0 GIEHQDSQHSFLAFLNTPTDALDQFET(0.005)VDS(0.302)T(0.302)PLS(0.207)VHT(0.143)PT(0.041)LR;GIEHQDSQHSFLAFLNT(0.001)PT(0.019)DALDQFET(0.088)VDS(0.293)T(0.293)PLS(0.175)VHT(0.125)PT(0.005)LR ; 151.4 1.90E-11 261960000 40725 52413 67619 1271.2 66625 27852 43808 36785 56271 13327.8 TRUE FALSE FALSE 37870.3878 48259.603 93802.8877 2959.417843 58268.27125 24415.90342 32846.77505 28409.85851 61148.61559 9990.432131 3.79066564 4.830582137 9.389272303 0.296225209 5.832407496 2.443928661 3.287823251 2.843706673 6.120717782 1 13.28633137 -5.268380731 24.99877402 3.286762385 5.886214245 0.266907306 2.176418718 769.4865198 2771249.805 0.587220814 0.892820294 5.39E-06 5.268380731 2.599451859 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLS(ph)VHTPTLR ddPTM_HeLa_A485_30min_R1 2 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHTPTLR 41 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6 H0Y7V8 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 0 GIEHQDSQHSFLAFLNTPTDALDQFETVDS(0.117)T(0.083)PLS(0.435)VHT(0.306)PT(0.059)LR;GIEHQDSQHSFLAFLNTPTDALDQFETVDS(0.008)T(0.022)PLS(0.624)VHT(0.282)PT(0.064)LR ; 200.23 9.30E-31 498580000 98509 191917 236240 33259 223500 122927 160882 174380 143988 102830 TRUE FALSE FALSE 120421.9872 214360.0237 323635.0068 35075.85495 201247.5552 129363.2676 126508.2464 131613.0316 172885.0709 77196.37345 1.559943581 2.776814689 4.192360241 0.454371797 2.606956082 1.675768716 1.638784839 1.704912105 2.239549128 1 16.23624545 -5.265067783 24.99947802 1.691143789 2.836416976 0.320090156 0.813721902 388.6522087 2677793.735 0.222413414 0.345029276 5.43E-06 5.265067783 1.145273186 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLS(ph)VHTPTLR ddPTM_HeLa_A486_30min_R1 1 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHTPTLR 41 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6 H0Y7V8 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 0 GIEHQDSQHSFLAFLNTPTDALDQFET(0.004)VDS(0.102)T(0.08)PLS(0.471)VHT(0.292)PT(0.051)LR 137.19 9.76E-09 205620000 20545 31187 38438 355.51 42047 17547 21501 18454 31988 7587.8 TRUE FALSE FALSE 19104.90159 28715.62854 53322.22301 827.6452465 36773.07319 15382.22954 16121.22239 14252.42705 34760.7456 5687.765492 3.358946782 5.04866605 9.374898294 0.145513251 6.465293487 2.704441589 2.834368331 2.505804269 6.111494162 1 12.47364627 -5.266881555 24.9941077 3.283777366 5.839619876 0.234714402 2.315226967 694.4302402 3189289.515 0.626943965 0.960596796 5.41E-06 5.266881555 2.555842511 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHT(ph)PTLR ddPTM_HeLa_A485_30min_R1 2 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHTPTLR 41 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6 H0Y7V8 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 0 GIEHQDSQHSFLAFLNTPTDALDQFETVDS(0.001)T(0.002)PLS(0.131)VHT(0.782)PT(0.085)LR;GIEHQDSQHSFLAFLNTPTDALDQFETVDS(0.002)T(0.002)PLS(0.001)VHT(0.995)PT(0.001)LR ; 294.93 1.92E-94 343822000 42970 94564 116164 17344.3 101648 58958 77336 88006 72461 49702 TRUE FALSE FALSE 52528.52826 105622.4372 159137.8976 18291.77519 91527.56821 62044.94971 60812.53182 66422.39051 87003.25805 37312.2061 1.407810841 2.830774383 4.265035875 0.490235692 2.453019475 1.662859321 1.629829436 1.780178592 2.331763976 1 15.18736004 -5.268545606 24.99740285 1.690397828 2.834163777 0.303931943 0.836920492 699.0076603 2458882.483 0.231357235 0.351429739 5.39E-06 5.268545606 1.143765949 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHT(ph)PTLR ddPTM_HeLa_A486_30min_R1 2 GIEHQDSQHSFLAFLNTPTDALDQFETVDSTPLSVHTPTLR 41 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6 H0Y7V8 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 0 GIEHQDSQHSFLAFLNT(0.021)PT(0.021)DALDQFET(0.09)VDS(0.062)T(0.062)PLS(0.043)VHT(0.567)PT(0.136)LR;GIEHQDSQHSFLAFLNTPTDALDQFETVDS(0.001)T(0.001)PLS(0.015)VHT(0.851)PT(0.133)LR ; 258 3.54E-65 127184000 30785 32911 46699 2892.1 51046 25855 27441 29745 37918 12772 TRUE FALSE FALSE 28627.13047 30303.0125 64782.10344 6732.954959 44643.33469 22665.27297 20574.97156 22972.71283 41204.76277 9573.808068 2.990150865 3.165199499 6.76659726 0.70326822 4.66306974 2.367425043 2.149089622 2.399537641 4.303905246 1 13.22487717 -5.276591758 24.99366725 2.639083871 4.193104655 0.224873835 1.509965518 1304.600598 2151920.116 0.412011864 0.613669869 5.29E-06 5.276591758 1.554020784 GIEYSRVS(ph)PQPMISR ddPTM_HeLa_A485_30min_R1 1 GIEYSRVSPQPMISR 15 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 GIEYSRVS(1)PQPMISR 199.31 1.44E-25 883660000 292060 428170 473500 321690 581990 493040 521640 728850 398970 453450 TRUE FALSE FALSE 357027.7394 478240.7569 648667.354 339263.1101 524045.0321 518854.812 410187.3526 550098.3947 479039.6194 340413.2601 1.048806792 1.404882867 1.905529044 0.996621313 1.539437776 1.524190955 1.204968785 1.615972288 1.40722961 1 18.37692771 -8.078934004 20.95898607 1.000000001 1.416251875 0.181545009 0.257290011 18350.3699 4872485.225 0.239536408 0.061848035 8.34E-09 8.078934004 0.416251874 GIEYSRVS(ph)PQPMISR ddPTM_HeLa_A486_30min_R1 2 GIEYSRVSPQPMISR 15 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 GIEYSRVS(1)PQPMISR;GIEYSRVS(1)PQPMISR ; 235.7 2.38E-41 1748710000 536130 605660 736110 228970 1007120 561170 714100 764280 464950 576660 TRUE FALSE FALSE 498550.0556 557665.2958 1021151.506 533053.7315 880797.6186 491938.551 535424.627 590270.1281 505252.2404 432260.5826 1.15335535 1.290113691 2.362351662 1.233176822 2.037654262 1.138060167 1.238661698 1.365542342 1.168860314 1 18.72154176 -6.305700241 24.99873339 1.208598478 1.617533556 0.26708429 0.357386932 681.6957413 385022.8199 0.124656621 0.109937337 4.95E-07 6.305700241 0.408935078 GIFNGFSVTLK ddPTM_HeLa_A485_30min_R1 2 GIFNGFSVTLK 11 0 F8VZL5;F8VWR4;F8VWQ0;F8VVM2;Q00325-2;Q00325 F8VZL5 SLC25A3 "Phosphate carrier protein, mitochondrial" 0 0 ; ; 206.48 4.26E-14 43473000 30967.5 31575 19521.6 34785 22289.1 25972.2 31138 28831.3 22653.2 66650 FALSE FALSE TRUE 37856.11354 35267.42158 26743.4522 36685.21647 20069.91894 27332.06423 24485.11193 21760.37847 27199.48945 50035.3816 0.756586886 0.704849657 0.534490821 0.733185504 0.401114537 0.546254737 0.489355955 0.43489982 0.543605117 1 15.61066101 -10.25993824 4.956799205 1.000092934 0.566975887 0.548888131 0.116446087 0.000126109 1.88E-05 0.118892287 0.028829461 5.50E-11 10.25993824 -0.433117047 GIFNGFSVTLK ddPTM_HeLa_A486_30min_R1 1 GIFNGFSVTLK 11 0 F8VZL5;F8VWR4;F8VWQ0;F8VVM2;Q00325-2;Q00325 F8VZL5 SLC25A3 "Phosphate carrier protein, mitochondrial" 0 0 110.38 0.0069811 18216000 7431 11326 11893 3857.2 15748 10735 11988 11956 13736 9810.2 FALSE FALSE TRUE 6910.125274 10428.48651 16498.28811 8979.756532 13772.739 9410.624845 8988.475604 9233.879798 14926.64754 7353.662066 0.93968491 1.41813513 2.243547223 1.221127168 1.872908882 1.279719514 1.222312845 1.255684544 2.029825059 1 12.84424716 GIFPVLCKDPVQEAWAEDVDLR ddPTM_HeLa_A485_30min_R1 2 GIFPVLCKDPVQEAWAEDVDLR 22 1 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 213.15 1.72E-27 414040000 269090 254260 284010 284240 346250 340370 430380 380510 269800 405990 FALSE FALSE TRUE 328948.1422 283993.4952 389077.1176 299767.3115 311776.1342 358191.2469 338425.7971 287189.3259 323946.3852 304784.1647 1.07928226 0.931785598 1.276566051 0.983539653 1.022940724 1.17522919 1.110378544 0.942271152 1.062871444 1 18.21742842 -7.247003664 24.76493485 1.001928467 1.081893358 0.1325157 0.095071146 1450.755921 2488824.371 0.044405107 0.025465653 5.66E-08 7.247003664 0.07996489 GIFPVLCKDPVQEAWAEDVDLR ddPTM_HeLa_A486_30min_R1 2 GIFPVLCKDPVQEAWAEDVDLR 22 1 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 204.83 7.95E-27 327640000 198026 275700 230720 116745 326420 267370 318400 318220 255490 306250 FALSE FALSE TRUE 184145.4 253852.5279 320060.9629 271788.26 285477.3599 234384.6078 238732.9523 245768.2527 277636.0789 229563.0066 0.802156248 1.105807646 1.394218379 1.183937534 1.243568657 1.021003389 1.039945224 1.070591714 1.209411233 1 17.80853065 -6.275880587 24.36643762 1.070836982 1.159612726 0.06013844 0.148663609 1769.841499 2986217.675 0.054985939 0.048740228 5.30E-07 6.275880587 0.088775744 GIGEFFRLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 GIGEFFRLSPK 11 1 H0YKX3;H0YMA4;A0A0U1RQM0;Q15004 H0YKX3 KIAA0101 PCNA-associated factor 1 0 GIGEFFRLS(1)PK;GIGEFFRLS(1)PK ; 112.42 0.00022845 1387370000 828590 857710 633130 1017100 1108200 960160 1368400 1446000 723260 1459500 TRUE FALSE FALSE 1012906.987 958011.7234 867351.1337 1072661.598 997863.7169 1010432.493 1076030.161 1091366.233 868411.6479 1095673.51 0.924460597 0.874358752 0.791614587 0.978997473 0.910730895 0.922202174 0.982071896 0.996068831 0.792582498 1 20.06338654 -5.278286837 24.97708803 0.939959795 0.864566046 0.228371527 0.06476521 1172.030274 1737583.046 0.017892831 0.026616365 5.27E-06 5.278286837 -0.075393749 GIGEFFRLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 GIGEFFRLSPK 11 1 H0YKX3;H0YMA4;A0A0U1RQM0;Q15004 H0YKX3 KIAA0101 PCNA-associated factor 1 0 GIGEFFRLS(1)PK;GIGEFFRLS(1)PK ; 143.46 5.07E-07 1286320000 746058 674307 369751 355968 682559 695977 929230 877730 455943 971350 TRUE FALSE FALSE 693763.1868 620872.4575 512928.4895 828711.4936 596946.0856 610114.4339 696726.8256 677890.0397 495464.5063 728117.6376 0.952817445 0.852708993 0.704458267 1.138156049 0.819848407 0.837933876 0.956887719 0.931017194 0.680473155 1 19.47381203 -2.342669555 14.94553588 0.885108717 0.958999171 0 0.130813477 0 0 0.028589887 0 0.004542871 2.342669555 0.073890454 GIGLAIVR ddPTM_HeLa_A485_30min_R1 2 GIGLAIVR 8 0 E9PQ63;A8MTM1;P16152-2;P16152 E9PQ63 CBR1 Carbonyl reductase [NADPH] 1 0 0 ; ; 126.04 0.0037588 90575000 118641 160560 181178 116400 185292 167507 183025 217780 149675 163540 FALSE FALSE TRUE 145032.2811 179336.0953 248203.2816 122758.6373 166843.6779 176277.4075 143920.2136 164369.1135 179713.3996 122772.4877 1.181309297 1.460718917 2.021652296 0.999887186 1.358966337 1.435805454 1.172251343 1.338810645 1.463792116 1 16.90562778 -13.00410619 0.168245853 3.85E-10 1.485311983 0.162244153 0.257028063 170.0165109 2.165938988 59.08999627 1.012425635 9.91E-14 13.00410619 1.485311982 GIGLDES(ph)ELDS(ph)EAELMR ddPTM_HeLa_A485_30min_R1 1 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 2 0 GIGLDES(1)ELDS(1)EAELMR 200.45 1.04E-24 237400000 184330 251030 257770 200430 289800 211340 266990 294630 182450 233180 TRUE FALSE FALSE 225333.5726 280385.7748 353129.8497 211378.9834 260946.4945 222405.4356 209945.4054 222371.5305 219066.0415 175052.5174 1.287234117 1.601723752 2.017279472 1.20751753 1.490675475 1.270506925 1.199328113 1.27031324 1.251430398 1 17.41742828 -5.953532182 1.217605305 1.201178355 1.600383417 0.385921131 0.210171533 0.496104247 1.54543242 0.093508751 0.111848138 1.11E-06 5.953532182 0.399205063 GIGLDESELDS(ph)EAELMR ddPTM_HeLa_A485_30min_R1 4 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 0 GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR ;;; 333.77 2.10E-121 467639000 393301 536910 601790 376125 637640 502899 610090 630430 451994 493720 TRUE FALSE FALSE 480789.4506 599696.954 824417.1636 396671.7564 574154.3227 529230.014 479739.2875 475816.054 542705.0499 370644.6902 1.297170749 1.617983394 2.224278899 1.070221068 1.549069332 1.427863471 1.294337408 1.283752517 1.464219141 1 18.49967732 -7.740728228 0.242308372 0.9132499 1.70806848 0.242062392 0.28248682 3.386531986 0.807211362 1.052260686 0.80896634 1.82E-08 7.740728228 0.794818581 GIGLDESELDS(ph)EAELMR ddPTM_HeLa_A486_30min_R1 4 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 0 GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR ;;; 353.38 2.31E-105 767850000 475900 556415 552937 166309 641613 503702 551046 551342 432592 499187 TRUE FALSE FALSE 442541.8676 512322.649 767049.0146 387175.7568 561135.9147 441560.3685 413168.4624 425813.4623 470089.4229 374187.326 1.182674657 1.369160881 2.049906454 1.034711039 1.499612295 1.180051642 1.104175459 1.137968693 1.256294348 1 18.51340117 -6.155874665 1.314588951 1.128022336 1.470141361 0.237024079 0.255946239 0.653119881 2.305024047 0.117797003 0.116252535 6.98E-07 6.155874665 0.342119025 GIGT(ph)PPNT(ph)TPIKNGS(ph)PEIK ddPTM_HeLa_A485_30min_R1 1 GIGTPPNTTPIKNGSPEIK 19 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 3 0 GIGT(0.985)PPNT(0.523)T(0.523)PIKNGS(0.97)PEIK 49.186 0.02651 325310000 390670 252460 144140 1034000 355510 344300 760290 626150 235550 1182900 TRUE FALSE FALSE 477573.1937 281983.0009 197463.3842 1090484.802 320114.1761 362327.0156 597847.8305 472585.7307 282822.7244 888024.7997 0.537792631 0.317539556 0.222362466 1.227989131 0.36047887 0.408014524 0.67323326 0.532176276 0.318485165 1 19.76024044 -10.95720832 2.651559749 1.372884566 0.515764991 0.226903031 0.270709377 20677717.22 9936582.898 47422943.94 0.068821793 1.10E-11 10.95720832 -0.857119575 GIGT(ph)PPNT(ph)TPIKNGS(ph)PEIK ddPTM_HeLa_A486_30min_R1 1 GIGTPPNTTPIKNGSPEIK 19 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 3 0 GIGT(1)PPNT(0.5)T(0.5)PIKNGS(1)PEIK 87.509 0.00044835 244400000 395710 353390 156100 300320 337710 482640 707560 594000 288110 897970 TRUE FALSE FALSE 367972.7724 325386.0894 216546.1005 699160.1373 295351.2628 423096.7839 530521.0042 458759.1669 313083.6068 673112.4672 0.546673536 0.483405233 0.321708646 1.038697352 0.438784419 0.628567742 0.788161013 0.681549056 0.465128225 1 19.36048805 -14 0.143217439 2.290285642 0.47709751 0.274655922 0.193831848 189.3630588 1.64335678 70.59926235 1.117683778 1.00E-14 14 -1.813188131 GIGT(ph)PPNTT(ph)PIKNGS(ph)PEIK ddPTM_HeLa_A485_30min_R1 1 GIGTPPNTTPIKNGSPEIK 19 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 3 0 GIGT(0.742)PPNT(0.572)T(0.686)PIKNGS(1)PEIK 89.511 0.00040108 244610000 286780 218880 157830 582810 342680 298520 597210 502060 235880 769390 TRUE FALSE FALSE 350573.2216 244476.112 216217.8849 614647.4345 308561.576 314150.0456 469611.2047 378928.9978 283218.9524 577595.2326 0.606953108 0.42326546 0.374341533 1.064149079 0.534217664 0.543893072 0.8130455 0.656045924 0.490341569 1 19.13969931 -14 0.195038341 2.626747077 0.552835868 0.261093171 0.192219429 202.8907739 1.996778499 129.3088424 0.504495305 1.00E-14 14 -2.073911209 GIGTPPNTT(ph)PIKNGS(ph)PEIK ddPTM_HeLa_A486_30min_R1 2 GIGTPPNTTPIKNGSPEIK 19 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 2 0 GIGTPPNT(0.455)T(0.545)PIKNGS(1)PEIK;GIGT(0.033)PPNT(0.453)T(0.514)PIKNGS(1)PEIK ; 137.42 1.22E-06 353900000 722500 608500 258550 395760 457100 670530 933850 741600 417010 1287320 TRUE FALSE FALSE 671856.481 560280.2439 358667.4842 921349.2806 399766.2557 587806.826 700190.8527 572753.869 453156.7626 964966.693 0.696248364 0.580621329 0.371688978 0.954799049 0.414279849 0.609147269 0.72561142 0.593547812 0.469608709 1 19.88011962 -10.97123739 2.500425301 1.33653311 0.602833941 0.358863414 0.159696306 13229977.5 5750317.959 25761773.52 0.038320158 1.07E-11 10.97123739 -0.733699168 GIGTPPNTTPIKNGS(ph)PEIK ddPTM_HeLa_A485_30min_R1 2 GIGTPPNTTPIKNGSPEIK 19 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 GIGTPPNTTPIKNGS(1)PEIK;GIGTPPNTTPIKNGS(1)PEIK ; 191.4 8.09E-19 659300000 537310 553970 332200 747650 659430 744880 1220750 1402070 471790 1279380 TRUE FALSE FALSE 656832.7558 618751.9726 455094.604 788492.2264 593774.8338 783880.765 959926.7899 1058210.134 566473.9255 960454.1112 0.683877291 0.644228564 0.473832741 0.820957729 0.618223012 0.816156395 0.999450967 1.101781045 0.589798012 1 19.87335716 -6.450482744 3.510897524 0.930473939 0.648304247 0.434721765 0.14782596 0.229904393 5.490000855 0.055230101 0.04643539 3.54E-07 6.450482744 -0.282169692 GIGTPPNTTPIKNGS(ph)PEIK ddPTM_HeLa_A486_30min_R1 1 GIGTPPNTTPIKNGSPEIK 19 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 GIGTPPNT(0.001)T(0.002)PIKNGS(0.997)PEIK 103.67 5.14E-05 334410000 126170 91167 62487 70735 112870 112510 187900 153210 79951 219010 TRUE FALSE FALSE 117326.1345 83942.5949 86683.63986 164674.6547 98712.79213 98629.66012 140885.4326 118327.4276 86881.21705 164168.4705 0.714669109 0.511319833 0.52801637 1.003083322 0.601289589 0.600783207 0.858175947 0.720768289 0.529219873 1 17.32481755 -11.25810293 2.342459271 2.298944242 0.677218037 0.297432321 0.150175694 12460217.72 2138493.896 85701974.91 0.038319661 5.52E-12 11.25810293 -1.621726205 GIHFCHDLVSLCNFHNYDNLR ddPTM_HeLa_A485_30min_R1 1 GIHFCHDLVSLCNFHNYDNLR 21 0 H7C201;B8ZZC5;C9JIJ6;B8ZZA8;B7Z509;O94925-3;O94925 H7C201;O94925-3 GLS "Glutaminase kidney isoform, mitochondrial" 0 0 153.11 9.60E-13 36238000 26330 30474 29429 20211 30531 28052 34502 37352 23413 37600 FALSE FALSE TRUE 32187.01766 34037.66921 40316.01174 21315.07575 27491.22644 29520.75934 27130.36584 28191.36343 28111.77434 28227.01198 1.140291352 1.205854493 1.4282777 0.755130432 0.973933283 1.045833663 0.961149054 0.998737077 0.99591747 1 14.7847888 -5.257188212 24.99999688 0.965489834 1.252912505 0.649339207 0.099834619 233.4494723 1372849.376 0.027649617 0.045788091 5.53E-06 5.257188212 0.28742267 GIHNFRAS(ph)GDYDNDCTNPITPLCTQPDQVIK ddPTM_HeLa_A486_30min_R1 2 GIHNFRASGDYDNDCTNPITPLCTQPDQVIK 31 1 Q8TAF3-4;Q8TAF3-3;Q8TAF3 Q8TAF3-4 WDR48 WD repeat-containing protein 48 1 0 GIHNFRAS(0.898)GDY(0.098)DNDCT(0.004)NPITPLCTQPDQVIK;GIHNFRAS(0.889)GDY(0.11)DNDCT(0.001)NPITPLCTQPDQVIK ; 238.71 1.51E-50 754410000 274600 338700 351360 211080 668680 378740 577080 621170 301630 424500 TRUE FALSE FALSE 255351.958 311860.1785 487416.0017 491404.9074 584807.9192 332014.9095 432688.4803 479743.151 327775.5313 318202.437 0.802482723 0.980068479 1.5317796 1.544315349 1.83784865 1.043407815 1.359789964 1.507666489 1.030084918 1 18.27958536 -4.628088034 4.832659799 1.38665327 0.843370719 0.346037044 0.257615189 0.200172118 7.467260615 0.066149188 0.188397395 2.35E-05 4.628088034 -0.543282551 GIITDS(ph)FGR ddPTM_HeLa_A485_30min_R1 7 GIITDSFGR 9 0 Q9BSQ5-3;Q9BSQ5;C9JUH3;A0A0A0MT72;Q9BSQ5-4;Q9BSQ5-2 Q9BSQ5-3 CCM2 Cerebral cavernous malformations 2 protein 1 0 GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR ;;;;;; 199.33 9.72E-10 2088918000 1885205 2591822 2640037 1738557 2602532 2648937 2918922 3092394 2191038 2506035 TRUE FALSE FALSE 2304562.348 2894913.037 3616696.547 1833529.967 2343414.776 2787631.245 2295270.469 2333979.523 2630759.229 1881326.595 1.224966656 1.538761555 1.922418233 0.974594189 1.245618269 1.481737011 1.220027653 1.240603056 1.398353288 1 20.84331889 -12.93151297 0.084481703 3.43E-11 1.722828129 0.189137655 0.237461659 310.5037677 2.282598251 62.55095068 7.72046168 1.17E-13 12.93151297 1.722828129 GIITDS(ph)FGR ddPTM_HeLa_A486_30min_R1 8 GIITDSFGR 9 0 Q9BSQ5-3;Q9BSQ5;C9JUH3;A0A0A0MT72;Q9BSQ5-4;Q9BSQ5-2 Q9BSQ5-3 CCM2 Cerebral cavernous malformations 2 protein 1 0 GIIT(0.017)DS(0.983)FGR;GIIT(0.001)DS(0.999)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIIT(0.017)DS(0.983)FGR;GIIT(0.006)DS(0.994)FGR ;;;;;;; 183 3.12E-08 2075798000 1940671 2348729 2156858 661734.7 2755087 1988398 2293842 2254291 1958330 2204329 TRUE FALSE FALSE 1804639.985 2162607.16 2992051.18 1540551.824 2409518.298 1743089.671 1719898.47 1741038.15 2128079.621 1652350.671 1.092165251 1.308806417 1.810784619 0.932339516 1.458236645 1.054915099 1.040879821 1.053673522 1.287910405 1 20.65608846 -6.277613092 24.03013848 1.087918091 1.325495997 0.208525577 0.226852366 814.7567705 1210522.709 0.079040198 0.069945696 5.28E-07 6.277613092 0.237577906 GILAADES(ph)TGSIAKR ddPTM_HeLa_A486_30min_R1 1 GILAADESTGSIAKR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADES(0.925)T(0.033)GS(0.041)IAKR 68.82 0.0061856 157620000 108010 85340 73304 42921 113970 89286 115350 120980 58715 117510 TRUE FALSE FALSE 100439.0568 78577.3476 101689.2719 99922.25711 99674.81987 78270.80111 86488.20995 93435.49497 63804.46348 88084.73114 1.140255019 0.892065476 1.154448343 1.134387945 1.131578863 0.888585344 0.981875165 1.060745645 0.724353275 1 16.42660434 -6.260632513 24.9995544 0.938081192 1.085506041 0.347540937 0.108908116 93.66845251 2902204.782 0.036716874 0.034725312 5.49E-07 6.260632513 0.147424849 GILAADESTGS(ph)IAK ddPTM_HeLa_A485_30min_R1 1 GILAADESTGSIAK 14 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADES(0.006)T(0.033)GS(0.96)IAK 161.76 1.78E-07 0 69687 76835 67016 107640 103450 66714 107750 112410 60440 133820 TRUE FALSE FALSE 85188.63273 85820.18487 91808.00717 113520.1006 93150.15477 70207.04188 84728.33226 84841.27125 72569.75361 100461.1368 0.847975998 0.85426253 0.9138659 1.129990206 0.927225769 0.698847775 0.843394122 0.844518328 0.722366439 1 16.61627798 -6.037675249 23.94846868 0.81340916 0.941476744 0.221166755 0.105235213 493.3600213 313605.5947 0.035336309 0.035347783 9.17E-07 6.037675249 0.128067585 GILAADESTGS(ph)IAK ddPTM_HeLa_A486_30min_R1 1 GILAADESTGSIAK 14 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADEST(0.001)GS(0.999)IAK 210.9 1.25E-22 0 187960 191660 116810 71885 157350 197080 236870 206610 131510 213360 TRUE FALSE FALSE 174784.9746 176472.1636 162041.9603 167351.9129 137613.6958 172766.2734 177602.6206 159569.4133 142909.3927 159933.2673 1.092861902 1.103411233 1.013184831 1.046385882 0.860444472 1.080239755 1.110479537 0.997724964 0.893556388 1 17.28711054 -4.803151937 4.357157225 1.002652671 1.099435584 0.228132384 0.072002352 0.309917424 12.61830636 0.019895666 0.047483173 1.57E-05 4.803151937 0.096782913 GILAADESTGS(ph)IAKR ddPTM_HeLa_A485_30min_R1 3 GILAADESTGSIAKR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADES(0.119)T(0.198)GS(0.683)IAKR;GILAADEST(0.002)GS(0.998)IAKR;GILAADES(0.096)T(0.064)GS(0.839)IAKR ;; 159.54 1.28E-09 730360000 513309 586579 548640 530274 805900 581980 869100 966120 519894 682820 TRUE FALSE FALSE 627492.8162 655174.3115 751604.7668 559241.5259 725661.7663 612451.5729 683409.6851 729177.5552 624231.957 512605.5404 1.22412414 1.278125693 1.466243939 1.09097831 1.415633873 1.194781415 1.333207762 1.422492536 1.217762798 1 18.96748955 -8.017210114 23.66849672 0.999999993 1.302999678 0.416138792 0.108641862 504.2489165 693477.6269 0.098559124 0.025447856 9.61E-09 8.017210114 0.302999685 GILAADESTGS(ph)IAKR ddPTM_HeLa_A486_30min_R1 2 GILAADESTGSIAKR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADEST(0.003)GS(0.997)IAKR;GILAADESTGS(1)IAKR ; 170.09 2.03E-12 649910000 796220 790390 590350 372220 859010 809240 1036660 993650 504380 888380 TRUE FALSE FALSE 740409.0897 727756.6178 818949.3301 866546.971 751264.9558 709404.1965 777276.7033 767417.5862 548100.0645 665923.8656 1.111852462 1.092852585 1.229794234 1.301270334 1.128154425 1.065293246 1.167215568 1.152410397 0.823067159 1 19.34499772 -7.747461199 24.92291197 0.911533629 1.157703717 0.625449751 0.07569703 127.387615 227133.1071 0.054251639 0.020276274 1.79E-08 7.747461199 0.246170087 GILAADESTGSIAK ddPTM_HeLa_A485_30min_R1 2 GILAADESTGSIAK 14 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 300.5 2.00E-65 123803000 147394 149099 146412 169264 186532 173794 207677 205389 162160 234950 FALSE FALSE TRUE 180181.2868 166534.8311 200575.8915 178510.4637 167960.2191 182893.5851 163305.1124 155017.0257 194704.0246 176381.2889 1.021544223 0.944175156 1.137172161 1.012071432 0.952256445 1.036921695 0.925864151 0.878874549 1.103881402 1 17.428338 -5.53262274 21.63061586 0.977244607 1.033507739 0.091039704 0.072060264 90.10462048 200017.3021 0.021093837 0.027294282 2.93E-06 5.53262274 0.056263133 GILAADESTGSIAK(ac)R ddPTM_HeLa_A485_30min_R1 2 GILAADESTGSIAKR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ; GILAADESTGSIAK(1)R;GILAADESTGSIAK(1)R 360.54 7.97E-134 409570000 282550 378450 428720 264290 434090 383790 452250 479360 345390 356810 FALSE TRUE FALSE 345402.2727 422706.4354 587321.3685 278727.4935 390870.4754 403884.6509 355623.093 361796.2084 414706.6049 267863.8336 1.289469609 1.578064607 2.192611674 1.04055665 1.459213326 1.507798367 1.327626385 1.350672107 1.548199319 1 18.03114028 -12.37273002 0.15555402 4.88E-17 1.642921572 0.21140269 0.280463107 118.1235392 1.715742473 39.96877101 1.420450689 4.24E-13 12.37273002 1.642921572 GILAADESTGSIAK(ac)R ddPTM_HeLa_A486_30min_R1 2 GILAADESTGSIAKR 15 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ; GILAADESTGSIAK(1)R;GILAADESTGSIAK(1)R 361.03 7.75E-134 284260000 296230 351890 330810 97759 409170 283950 322660 354550 276760 342020 FALSE TRUE FALSE 275465.8067 324004.9548 458908.4914 227587.8925 357848.0832 248919.136 241927.0553 273826.7048 300749.7796 256375.9658 1.074460337 1.263788334 1.789982497 0.887711497 1.395794189 0.970914474 0.943641712 1.068066985 1.173081021 1 17.9679015 -5.916920066 1.44952133 1.038652068 1.323664199 0.196187759 0.230571406 0.644545268 2.804892686 0.091699215 0.110238125 1.21E-06 5.916920066 0.285012132 GILFVGSGVSGGEEGAR ddPTM_HeLa_A485_30min_R1 1 GILFVGSGVSGGEEGAR 17 0 P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 131.69 1.51E-06 0 10668 16223 15200 8225.6 21800 10033 17220 14277 11822 22087 FALSE FALSE TRUE 13041.0598 18120.13873 20823.11252 8674.9437 19629.51546 10558.31237 13540.80633 10775.54336 14194.56696 16581.11738 0.786500662 1.09281771 1.255832888 0.523182093 1.183847566 0.636767241 0.816640158 0.649868348 0.856068179 1 14.01725361 -5.250601451 24.99740623 0.803593496 1.049827123 0.212848667 0.2073193 1066.684345 2460275.461 0.053926072 0.092234439 5.62E-06 5.250601451 0.246233626 GILFVGSGVSGGEEGAR ddPTM_HeLa_A486_30min_R1 2 GILFVGSGVSGGEEGAR 17 0 P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 ; ; 208.28 1.47E-18 25417000 46862 41165 35128 11538.8 45376 30531 38385 43161 34357 41257 FALSE FALSE TRUE 43577.2158 37902.93548 48730.50236 26862.90954 39684.51897 26764.39564 28780.667 33334.1825 37335.09242 30925.97866 1.409081222 1.225601812 1.575714156 0.868619546 1.283209802 0.865434072 0.930630759 1.077869931 1.207240451 1 14.91653163 -5.263723935 24.99941137 1.035673261 1.385679337 0.561486937 0.14965654 151.4324518 1657099.256 0.040765735 0.063871021 5.45E-06 5.263723935 0.350006077 GILHAEMPCSEEPAHGLQLWVNLR ddPTM_HeLa_A486_30min_R1 1 GILHAEMPCSEEPAHGLQLWVNLR 24 0 O00625 O00625 PIR Pirin 0 0 46.578 0.031967 13412000 4540.4 7884.8 7318.1 3628 13473 11498 11471 11938 7995.1 9531.6 FALSE FALSE TRUE 4222.141407 7259.979732 10151.86431 8446.167349 11783.09071 10079.49366 8600.834472 9219.978005 8688.121705 7144.82532 0.590936967 1.016117177 1.42086949 1.182137697 1.649178277 1.410740391 1.203785129 1.290441346 1.216001976 1 12.80268302 -4.413300227 2.594168882 1.316190951 0.546869374 0.627690229 0.166930432 0.21904454 2.32399337 0.04330135 0.312663967 3.86E-05 4.413300227 -0.769321576 GILHLS(ph)PDVYQEMEASR ddPTM_HeLa_A485_30min_R1 1 GILHLSPDVYQEMEASR 17 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJ67;E5RJN7 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 GILHLS(1)PDVYQEMEASR 121.21 1.04E-06 0 50549 65252 65334 61173 85396 63913 73919 88406 57633 75721 TRUE FALSE FALSE 61793.45066 72882.65378 89503.76537 64514.72609 76893.6744 67259.38585 58125.60179 66724.28988 69199.41446 56845.14824 1.087048808 1.282126198 1.57451899 1.134920536 1.352686672 1.183203632 1.022525292 1.17379041 1.217331938 1 15.7947496 -6.476969201 5.674363611 1.115554455 1.292299486 0.284033466 0.136438111 0.283863329 22.50507862 0.049910248 0.042816642 3.33E-07 6.476969201 0.176745031 GILHLS(ph)PDVYQEMEASR ddPTM_HeLa_A486_30min_R1 4 GILHLSPDVYQEMEASR 17 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJ67;E5RJN7 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR ;;; 163.68 5.21E-12 541074000 594828 469897 409548 166413 493232 346917 402298 430477 320665 424590 TRUE FALSE FALSE 553133.6289 432660.6504 568135.9537 387417.874 431366.2434 304117.9077 301638.7853 332466.7843 348460.5004 318269.9004 1.737938863 1.359414289 1.785075978 1.217262058 1.355347279 0.955534618 0.947745247 1.04460643 1.094858483 1 18.2798912 -5.741942825 1.312512949 1.008695182 1.604278529 0.751392294 0.14582447 0.206581685 0.745740772 0.054270806 0.07861483 1.81E-06 5.741942825 0.595583346 GILIGIQQSFRPR ddPTM_HeLa_A485_30min_R1 2 GILIGIQQSFRPR 13 1 P31327;P31327-3;P31327-2 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 278.41 1.76E-51 178525000 170082 249370 212072 187434 215040 233710 235870 250340 188180 302020 FALSE FALSE TRUE 207916.1541 278531.6523 290526.2579 197673.0448 193629.8625 245946.6942 185474.4476 188943.7225 225945.9999 226731.9723 0.917012947 1.228462177 1.281364313 0.871835775 0.854003344 1.084746416 0.818033936 0.833335152 0.996533474 1 17.79062832 -5.274952009 24.92764922 0.915232623 1.150898053 0.414816088 0.119187775 659.2952287 1216244.263 0.033558759 0.050088422 5.31E-06 5.274952009 0.23566543 GILIGIQQSFRPR ddPTM_HeLa_A486_30min_R1 2 GILIGIQQSFRPR 13 1 P31327;P31327-3;P31327-2 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 268.08 4.20E-51 196969000 231150 242290 230180 73621 279090 188270 226000 228080 243410 249200 FALSE FALSE TRUE 214947.5787 223090.058 319311.8604 171393.4086 244083.9298 165043.1616 169452.4096 176151.163 264508.9748 186798.698 1.15069099 1.194280583 1.709390183 0.917529996 1.306668261 0.883534861 0.907139137 0.942999951 1.416010805 1 17.51112487 -5.304455195 24.9980937 1.048416299 1.335737663 0.281656903 0.217582568 608.0345591 353350.2868 0.061137312 0.090681908 4.96E-06 5.304455195 0.287321363 GILLQLFGGTR ddPTM_HeLa_A485_30min_R1 2 GILLQLFGGTR 11 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 ; ; 270.19 7.12E-46 200829000 187348 201337 234910 182573 247900 166628 227450 186323 185630 261820 FALSE FALSE TRUE 229022.9163 224881.6108 321812.9844 192546.5007 223218.2056 175352.3844 178853.4494 140626.9921 222884.2383 196553.0924 1.165196199 1.144126546 1.637282733 0.979615728 1.135663666 0.8921375 0.909949811 0.715465681 1.133964546 1 17.58455954 -5.728515639 1.807907187 0.920765513 1.287686636 0.407928272 0.178933747 0.324306614 2.187483118 0.061419273 0.083265318 1.87E-06 5.728515639 0.366921124 GILLQLFGGTR ddPTM_HeLa_A486_30min_R1 2 GILLQLFGGTR 11 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 ; ; 250.62 1.75E-35 229263000 212511 239650 206173 74385 248310 203680 234230 232120 225270 224564 FALSE FALSE TRUE 197615.0763 220659.2612 286008.7071 173172.0392 217164.6444 178552.0325 175623.1766 179271.3431 244796.585 168331.7127 1.17396225 1.310859716 1.699077984 1.028754692 1.290099417 1.060715355 1.043316044 1.064988529 1.454251139 1 17.36094747 -5.30173286 24.98897971 1.136895615 1.3862566 0.30504218 0.179711703 627.9872104 389460.1286 0.050249239 0.07453259 4.99E-06 5.30173286 0.249360985 GILLQLFGGTRK ddPTM_HeLa_A485_30min_R1 2 GILLQLFGGTRK 12 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 ; ; 177.83 3.14E-10 0 271840 413050 289970 191219 389270 349560 523900 571030 205520 293730 FALSE FALSE TRUE 332309.8702 461352.6044 397241.9697 201664.8098 350512.912 367862.4211 411964.4851 430983.9972 246765.9789 220508.5167 1.507016033 2.09222125 1.801481302 0.914544312 1.589566323 1.668245865 1.8682475 1.954500459 1.119076862 1 17.75047485 -7.875755004 6.276135822 1.010283944 1.669526961 0.397847351 0.303678963 0.224476665 10.77673481 0.311281947 0.080843485 1.33E-08 7.875755004 0.659243017 GILLQLFGGTRK ddPTM_HeLa_A486_30min_R1 1 GILLQLFGGTRK 12 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 213.63 2.49E-22 0 71967 61858 38018 30067 61433 41284 70708 58576 34710 84436 FALSE FALSE TRUE 66922.48494 56956.1468 52739.58776 69997.4955 53727.5003 36190.79982 53016.11053 45239.52351 37718.69075 63292.67601 1.057349588 0.899885269 0.833265254 1.105933576 0.848873893 0.571800753 0.837634208 0.714767116 0.595940844 1 15.94975095 -6.001056708 24.97532812 0.729639144 0.961078715 0.394278131 0.133453822 38.60313847 912425.023 0.039724593 0.044478858 9.98E-07 6.001056708 0.231439571 GILRT(ph)PDTIR ddPTM_HeLa_A485_30min_R1 3 GILRTPDTIR 10 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 GILRT(0.999)PDT(0.001)IR;GILRT(0.994)PDT(0.006)IR;GILRT(0.999)PDT(0.001)IR ;; 104.26 0.0012334 660320000 252454 395911 379679 332746 485617 432529 551151 677750 323748 670860 TRUE FALSE FALSE 308611.5213 442209.3475 520138.0619 350923.0714 437267.2664 455175.5496 433393.0864 511530.7498 388721.254 503626.9483 0.612778014 0.878049415 1.032784412 0.696791688 0.868236435 0.903795063 0.860543876 1.015693762 0.771843634 1 18.94199596 -4.264407881 6.200700405 0.889865714 0.606486981 0.409798559 0.10056978 0.117542723 24.23363916 0.024018322 0.141358731 5.44E-05 4.264407881 -0.283378733 GILRT(ph)PDTIR ddPTM_HeLa_A486_30min_R1 4 GILRTPDTIR 10 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 GILRT(1)PDTIR;GILRT(0.997)PDT(0.003)IR;GILRT(1)PDTIR;GILRT(0.997)PDT(0.003)IR ;;; 111.79 0.00078569 515120000 389313 398229 489585 194276 741844 411646 555140 617670 351910 537050 TRUE FALSE FALSE 362024.1691 366671.8837 679165.4235 452284.3462 648795.0081 360861.3018 416238.1003 477040.0246 382413.8421 402569.1844 0.899284354 0.910829487 1.687077526 1.123494703 1.611636045 0.89639574 1.033954203 1.184988924 0.949933221 1 18.61887722 GILRT(ph)PDTIRR ddPTM_HeLa_A486_30min_R1 1 GILRTPDTIRR 11 2 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 GILRT(0.943)PDT(0.057)IRR 113.76 0.00041131 73725000 70997 57105 91237 34226 154830 55909 89270 114550 52253 78253 TRUE FALSE FALSE 66020.47693 52579.79183 126566.4098 79679.85769 135409.7777 49011.51602 66933.7018 88469.46561 56782.33211 58657.93946 1.12551647 0.896379796 2.157702964 1.358381464 2.308464616 0.835547864 1.141085119 1.508226617 0.968024664 1 15.84003877 GILSLIQS(ph)STR ddPTM_HeLa_A485_30min_R1 1 GILSLIQSSTR 11 0 Q9GZY8-2;Q9GZY8;A0A0A0MS29;H7C433;E9PQX8 Q9GZY8-2 MFF Mitochondrial fission factor 1 0 GILSLIQS(0.967)S(0.031)T(0.002)R 99.844 0.0014171 18005000 30058 27945 24676 32081 33166 28893 41702 48355 25401 45186 TRUE FALSE FALSE 36744.2984 31212.92466 33804.67925 33833.5038 29863.87659 30405.7928 32792.02703 36495.86043 30498.74771 33921.96179 1.083200867 0.920139138 0.996542578 0.997392309 0.880369973 0.896345353 0.966690171 1.075877058 0.89908561 1 15.04993199 -10.2630769 22.34949161 0.999999999 0.967067228 0.018638464 0.068159294 0 0 0.065592893 0.015908613 5.46E-11 10.2630769 -0.032932772 GILSLIQS(ph)STR ddPTM_HeLa_A486_30min_R1 1 GILSLIQSSTR 11 0 Q9GZY8-2;Q9GZY8;A0A0A0MS29;H7C433;E9PQX8 Q9GZY8-2 MFF Mitochondrial fission factor 1 0 GILSLIQS(0.947)S(0.043)T(0.009)R 104.17 0.0008096 37087000 73909 86709 85697 45394 106880 89483 101450 93957 85025 91954 TRUE FALSE FALSE 68728.36077 79837.86305 118881.1734 105679.5261 93474.11378 78443.49726 76066.13697 72565.04217 92395.03546 68928.11988 0.997101921 1.158277104 1.72471226 1.533184516 1.356110016 1.13804783 1.103557403 1.052763985 1.340454892 1 16.07280504 -6.255364572 5.363041185 1.127645864 1.374813302 0.238615014 0.201226247 0.274055239 27.83697321 0.075138259 0.071030106 5.55E-07 6.255364572 0.247167438 GILSLIQS(ph)STRR ddPTM_HeLa_A485_30min_R1 1 GILSLIQSSTRR 12 1 Q9GZY8-2;Q9GZY8;A0A0A0MS29;H7C433;E9PQX8 Q9GZY8-2 MFF Mitochondrial fission factor 1 0 GILSLIQS(0.511)S(0.245)T(0.245)RR 57.794 0.020569 91752000 90590 112430 101470 111480 131990 117600 146680 164980 96267 177260 TRUE FALSE FALSE 110741.433 125577.7105 139007.9755 117569.8701 118848.6122 123757.3542 115340.6197 124518.3963 115586.9039 133072.3442 0.832189691 0.943680005 1.044604544 0.883503412 0.893112786 0.930000556 0.866751243 0.935719567 0.868601997 1 17.02185125 -3.065619113 12.13926026 0.919218442 0.390593237 0 0.061709114 0 0 0.013908079 0 0.000859767 3.065619113 -0.528625205 GILSLIQS(ph)STRR ddPTM_HeLa_A486_30min_R1 1 GILSLIQSSTRR 12 1 Q9GZY8-2;Q9GZY8;A0A0A0MS29;H7C433;E9PQX8 Q9GZY8-2 MFF Mitochondrial fission factor 1 0 GILSLIQS(0.832)S(0.099)T(0.068)RR 51.073 0.029263 73435000 114100 118190 100750 69979 138720 130330 161500 155100 108360 179040 TRUE FALSE FALSE 106102.1792 108824.194 139763.0982 162914.6485 121320.4441 114251.2097 121090.9918 119787.1158 117752.732 134207.2186 0.790584741 0.81086692 1.04139777 1.213903769 0.903978529 0.851304504 0.902268843 0.892553448 0.877394921 1 17.03410275 -5.963840348 24.99911504 0.895592114 0.971275288 0.055196395 0.116367096 509.6236276 352328.1039 0.039788043 0.045115291 1.09E-06 5.963840348 0.075683174 GILSLPHQAS(ph)PVSR ddPTM_HeLa_A485_30min_R1 5 GILSLPHQASPVSR 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 GILSLPHQAS(1)PVSR;GILSLPHQAS(1)PVSR;GILSLPHQAS(0.999)PVS(0.001)R;GILSLPHQAS(0.999)PVS(0.001)R;GILSLPHQAS(1)PVSR ;;;; 242.9 1.57E-35 4795700000 1624630 2335850 2517520 1492010 2514000 2196930 2243550 2472710 1986880 1958300 TRUE FALSE FALSE 1986023.339 2609007.338 3448855.411 1573514.728 2263697.333 2311957.858 1764197.214 1866273.995 2385628.591 1470131.85 1.350915116 1.774675747 2.345949726 1.070322181 1.539792049 1.572619393 1.200026525 1.269460284 1.622731044 1 20.48751412 -5.281809548 24.99656791 1.350281374 1.818929881 0.368309219 0.298078267 886.4220211 1087740.986 0.08374129 0.124372688 5.23E-06 5.281809548 0.468648506 GILSLPHQAS(ph)PVSR ddPTM_HeLa_A486_30min_R1 6 GILSLPHQASPVSR 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 GILSLPHQAS(0.996)PVS(0.004)R;GILSLPHQAS(1)PVSR;GILSLPHQAS(0.986)PVS(0.014)R;GILSLPHQAS(0.999)PVS(0.001)R;GILSLPHQAS(1)PVSR;GILSLPHQAS(1)PVSR ;;;;; 248.75 6.08E-36 5536180000 2592140 2809510 2399030 865579 2916550 2500540 2780100 2881670 2205283 3157560 TRUE FALSE FALSE 2410444.372 2586874.196 3327998.664 2015111.656 2550729.103 2192048.798 2084489.575 2225576.647 2396438.706 2366886.424 1.018403058 1.092943949 1.406066058 0.851376575 1.077672793 0.926131806 0.880688467 0.940297188 1.01248572 1 21.17455905 -5.289000593 24.99989512 0.953781164 1.16451844 0.445975826 0.110691021 657.3120933 596225.2933 0.03109782 0.04613724 5.14E-06 5.289000593 0.210737276 GILTLK ddPTM_HeLa_A485_30min_R1 2 GILTLK 6 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ; ; 149.11 0.012365 1214010000 2055670 2253530 2182430 2014190 2681100 2466400 2985500 3207100 2093560 2668000 FALSE FALSE TRUE 2512946.7 2517060.73 2989801.675 2124220.1 2414160.27 2595536.89 2347623.536 2420553.696 2513718.289 2002916.701 1.25464364 1.25669766 1.492723923 1.060563377 1.205322353 1.2958786 1.172102432 1.208514411 1.255028872 1 20.93367099 -14 0.15802655 0.10784697 1.311152753 0.355072033 0.101699485 152.7343681 1.394710379 42.76991577 0.45188862 1.00E-14 14 1.203305783 GILTLK ddPTM_HeLa_A486_30min_R1 2 GILTLK 6 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ; ; 142.63 0.012865 676550000 1432450 1597650 1305710 513140 1694300 1440950 1818560 1678120 1339530 1573200 FALSE FALSE TRUE 1332042.652 1471046.395 1811315.88 1194615.853 1481785.095 1263180.24 1363537.053 1296048.709 1455641.539 1179260.48 1.129557612 1.247431267 1.535976072 1.013021188 1.256537568 1.071163039 1.15626452 1.099035142 1.234368117 1 20.16945099 -5.292763043 24.99380622 1.128090387 1.298632847 0.323580772 0.122417454 800.0412436 638367.8934 0.033581218 0.04981398 5.10E-06 5.292763043 0.17054246 GINGGPSRMS(ph)PK ddPTM_HeLa_A485_30min_R1 3 GINGGPSRMSPK 12 1 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GINGGPSRMS(1)PK;GINGGPSRMS(1)PK;GINGGPSRMS(1)PK ;; 93.237 0.00088557 7558300000 4599900 8744600 5548700 4703700 9805600 11420900 16011300 24870600 5734800 7537200 TRUE FALSE FALSE 5623131.886 9767204.902 7601395.031 4960651.221 8829320.034 12018880.66 12590354.95 18771046.35 6885721.757 5658314.752 0.993782095 1.726168538 1.34340265 0.87670118 1.560415145 2.124109596 2.225106857 3.317427039 1.216920949 1 22.431941 -6.146442017 3.573255899 2.139228381 1.272796777 0.2124164 0.6325906 0.318260502 7.431379951 0.211608131 0.211792419 7.14E-07 6.146442017 -0.866431604 GINGGPSRMS(ph)PK ddPTM_HeLa_A486_30min_R1 2 GINGGPSRMSPK 12 1 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GINGGPSRMS(1)PK;GINGGPSRMS(1)PK ; 127.97 1.72E-05 3836900000 6292100 4280900 3283200 3638800 7626200 4855000 8884700 8867000 3122600 10202900 TRUE FALSE FALSE 5851056.282 3941665.893 4554542.967 8471310.295 6669650.885 4256039.462 6661654.087 6848177.665 3393269.482 7648027.43 0.765041226 0.515383336 0.59551865 1.107646432 0.872074655 0.55648852 0.871029053 0.895417508 0.443679042 1 22.86665627 GIPEFWFTIFR ddPTM_HeLa_A485_30min_R1 2 GIPEFWFTIFR 11 0 C9J6D1;Q99733;Q99733-2;A8MXH2;C9JZI7;H0YCI4 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 0 0 ; ; 219.8 5.20E-20 64114000 24911 35106 38156 20988.6 39230 31804 40453 40538 25291 31777 FALSE FALSE TRUE 30452.36601 39211.34132 52271.4922 22135.15407 35324.12346 33469.20826 31809.88608 30595.99194 30366.67172 23855.57871 1.276530172 1.643696923 2.19116429 0.927881664 1.480748964 1.402992929 1.333435942 1.282550816 1.272937961 1 14.54203906 -7.091407883 0.281655671 0.967458471 1.682974868 0.231625436 0.293465319 2.718170952 0.737823423 0.579574739 0.721232289 8.10E-08 7.091407883 0.715516397 GIPEFWFTIFR ddPTM_HeLa_A486_30min_R1 2 GIPEFWFTIFR 11 0 C9J6D1;Q99733;Q99733-2;A8MXH2;C9JZI7;H0YCI4 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 0 0 ; ; 234.2 5.88E-27 50341000 22630.5 31993 29625 10241.5 36857 25501 30112 31319 26209.1 28120 FALSE FALSE TRUE 21044.21881 29457.75816 41096.59339 23842.72958 32234.05138 22354.9459 22577.65911 24188.34739 28480.92589 21078.56897 0.998370375 1.39752173 1.949686122 1.131136066 1.529233385 1.060553301 1.071119161 1.147532711 1.351179292 1 14.3634893 -6.266571581 24.83439822 1.131862823 1.416454832 0.230248991 0.250623706 615.5952468 2978816.044 0.088065945 0.080024708 5.41E-07 6.266571581 0.284592008 GIPEFWLTVFK ddPTM_HeLa_A485_30min_R1 2 GIPEFWLTVFK 11 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;P55209-3;F8W543;F8VUX1;F8VXI6 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 ; ; 194.06 1.42E-13 61605000 74552 90272 85000 82204 99805 103774 135734 139374 67948 117001 FALSE FALSE TRUE 91135.8352 100828.5251 116445.0371 86694.59637 89868.06376 109207.4462 106733.3221 105192.308 81584.54034 87834.80394 1.037582269 1.147933628 1.325727752 0.987018727 1.023148681 1.243327716 1.215159792 1.197615333 0.928840695 1 16.42250509 -7.763864428 24.99999406 0.964420276 1.149161938 0.339547362 0.101930995 76.85600023 792231.0031 0.087853128 0.026803566 1.72E-08 7.763864428 0.184741662 GIPEFWLTVFK ddPTM_HeLa_A486_30min_R1 2 GIPEFWLTVFK 11 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;P55209-3;F8W543;F8VUX1;F8VXI6 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 ; ; 229.88 2.10E-21 69087000 56182 90510 74062 31418 105124 86770 105406 100835 81534 95172 FALSE FALSE TRUE 52243.93192 83337.65797 102740.7898 73142.69178 91938.36768 76065.19961 79032.30393 77877.07171 88601.43277 71340.31173 0.732319928 1.168170645 1.440150559 1.025264538 1.288729548 1.066230267 1.107821118 1.091627858 1.241954662 1 16.1224299 -4.261239327 22.43414573 1.165927262 0.732319445 0.501683362 0.127364867 3.113056807 347935.0632 0.030597882 0.172335734 5.48E-05 4.261239327 -0.433607816 GIPHLVTHDAR ddPTM_HeLa_A485_30min_R1 6 GIPHLVTHDAR 11 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 ;;;;; ;;;;; 169.65 7.33E-08 1622202000 472832.9 709567 709940 474422.3 753352 710666 771982 895510 628519 694155 FALSE FALSE TRUE 578012.9474 792544.6882 972576.3491 500338.7889 678345.6297 747875.3729 607041.7392 675884.7684 754656.9982 521114.9335 1.109185153 1.520863513 1.866337513 0.960131358 1.301719805 1.435144773 1.164890315 1.296997505 1.448158457 1 18.99124207 -13.11383855 0.19312174 5.84E-16 1.413076056 0.149744515 0.238473244 185.5165101 2.481162153 73.28904345 0.65549669 7.69E-14 13.11383855 1.413076056 GIPHLVTHDAR ddPTM_HeLa_A486_30min_R1 3 GIPHLVTHDAR 11 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 ;; ;; 167.12 9.44E-08 541228900 282228.6 349379.7 329611.7 104593.59 430571.3 298003.1 328000.3 335582.7 296209.9 355054.7 FALSE FALSE TRUE 262445.8326 321693.5802 457246.1775 243499.1634 376565.0326 261238.5074 245931.1557 259177.8449 321885.6126 266146.6921 0.986094663 1.20870779 1.718023147 0.914905842 1.414877749 0.981558348 0.924043631 0.973815766 1.209429319 1 18.02186211 -6.283206578 24.28527684 1.010275003 1.253859138 0.216800787 0.218942649 869.2230737 969772.9727 0.07644343 0.067484642 5.21E-07 6.283206578 0.243584135 GIPLAT(ph)GDTSPEPELLPGAPLPPPK ddPTM_HeLa_A486_30min_R1 1 GIPLATGDTSPEPELLPGAPLPPPK 25 0 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.37)GDT(0.331)S(0.298)PEPELLPGAPLPPPK 61.703 0.026437 29059000 36644 42387 33687 14749 44216 56721 45235 50413 43118 52327 TRUE FALSE FALSE 34075.44483 39028.09975 46731.50857 34336.41737 38670.01698 49723.33972 33916.72455 38935.06041 46855.50296 39223.97861 0.868740144 0.995006145 1.191401541 0.875393537 0.985876965 1.267677107 0.864693633 0.992634143 1.19456273 1 15.25944826 -4.331059242 4.077555046 1.042033028 0.863963207 0.147264991 0.127926355 0.402990734 11.80030854 0.031637842 0.174237533 4.67E-05 4.331059242 -0.178069821 GIPLATGDT(ph)SPEPELLPGAPLPPPK ddPTM_HeLa_A486_30min_R1 1 GIPLATGDTSPEPELLPGAPLPPPK 25 0 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.122)GDT(0.492)S(0.386)PEPELLPGAPLPPPK 145.33 6.06E-09 916740000 1209200 1291800 878260 425140 1212700 1302400 1356200 1327300 1080300 1353500 TRUE FALSE FALSE 1124441.324 1189433.063 1218345.793 989747.4054 1060591.858 1141723.13 1016864.416 1025102.765 1173941.274 1014574.79 1.108288256 1.172346361 1.200843747 0.975529271 1.045356013 1.125321801 1.002256734 1.010376736 1.157077118 1 19.95244379 -5.251325333 24.99799747 1.047127678 1.161678148 0.455156507 0.057806544 640.7493746 1583681.028 0.015615888 0.026636473 5.61E-06 5.251325333 0.11455047 GIPLATGDTS(ph)PEPELLPGAPLPPPK ddPTM_HeLa_A485_30min_R1 2 GIPLATGDTSPEPELLPGAPLPPPK 25 0 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.018)GDT(0.122)S(0.86)PEPELLPGAPLPPPK;GIPLAT(0.075)GDT(0.452)S(0.473)PEPELLPGAPLPPPK ; 177.6 3.53E-15 1072520000 1178080 1117950 1119360 1371040 1260080 1219420 1389550 1185450 1134460 1867380 TRUE FALSE FALSE 1440139.832 1248684.528 1533457.844 1445936.444 1134622.011 1283266.946 1092661.291 894716.5288 1362135.716 1401876.533 1.027294343 0.890723611 1.093860842 1.031429238 0.809359444 0.915392273 0.779427621 0.638227767 0.9716517 1 20.41892786 -5.76120995 24.99993343 0.83376119 1.008179203 0.331861491 0.108229756 6.654089879 724994.2997 0.032511751 0.039375325 1.73E-06 5.76120995 0.174418012 GIPLATGDTS(ph)PEPELLPGAPLPPPK ddPTM_HeLa_A486_30min_R1 2 GIPLATGDTSPEPELLPGAPLPPPK 25 0 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.028)GDT(0.134)S(0.839)PEPELLPGAPLPPPK;GIPLAT(0.003)GDT(0.134)S(0.863)PEPELLPGAPLPPPK ; 185.7 1.70E-20 480620000 808480 869400 572760 311840 807430 852660 890540 862430 730580 950650 TRUE FALSE FALSE 751809.727 800505.5777 794548.011 725979.2795 706154.6004 747467.4784 667717.4728 666073.5157 793907.2626 712601.0523 1.055021915 1.123357277 1.114996966 1.018773797 0.990953631 1.048928395 0.937014436 0.934707455 1.114097797 1 19.44273509 -5.350803453 4.481277859 1.000416648 1.100230769 0.397188072 0.05157794 0.213359171 7.497312262 0.014753951 0.022529287 4.46E-06 5.350803453 0.099814121 GIPLATGDTS(ph)PEPELLPGAPLPPPKEVINGNIK ddPTM_HeLa_A485_30min_R1 1 GIPLATGDTSPEPELLPGAPLPPPKEVINGNIK 33 1 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.016)GDT(0.2)S(0.784)PEPELLPGAPLPPPKEVINGNIK 118.99 1.74E-05 437710000 277780 400580 243570 234650 426620 516550 659300 892750 298850 325750 TRUE FALSE FALSE 339571.2027 447424.3464 333676.6788 247468.3353 384144.2148 543595.7593 518435.169 673801.6627 358826.4538 244546.52 1.388575076 1.829608315 1.36447118 1.011947892 1.570843105 2.222872602 2.119985879 2.75531078 1.467313678 1 17.89974941 -6.117891959 5.214082602 2.03240282 1.412344523 0.186093334 0.478814718 0.307524458 11.93830575 0.15517065 0.156007845 7.62E-07 6.117891959 -0.620058296 GIPLATGDTS(ph)PEPELLPGAPLPPPKEVINGNIK ddPTM_HeLa_A486_30min_R1 1 GIPLATGDTSPEPELLPGAPLPPPKEVINGNIK 33 1 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.01)GDT(0.183)S(0.807)PEPELLPGAPLPPPKEVINGNIK 156.43 2.91E-10 216040000 128240 104570 73185 48736 134080 102810 147930 159320 64623 162430 TRUE FALSE FALSE 119251.0382 96283.49236 101524.192 113459.871 117262.4362 90126.3475 110916.3494 123046.3139 70224.57367 121756.4708 0.979422592 0.790787477 0.83382995 0.931859065 0.963089973 0.740218133 0.910968827 1.010593631 0.576762559 1 16.89363892 GIPNMLLS(ph)EEETES ddPTM_HeLa_A486_30min_R1 1 GIPNMLLSEEETES 14 0 F5GYQ2;Q9UI30-2;Q9UI30 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 1 0 GIPNMLLS(0.999)EEET(0.001)ES 88.796 0.0009725 0 74720 76179 63373 29823 89590 80441 96354 91805 72752 86974 TRUE FALSE FALSE 69482.51385 70142.2986 87912.72279 69429.45117 78352.78681 70517.00728 72245.21007 70903.00559 79058.20194 65195.14429 1.065762099 1.075882251 1.348455069 1.064948194 1.201819363 1.081629745 1.108137897 1.087550405 1.21263942 1 15.9924769 -6.282778123 23.94271041 1.104097546 1.153327036 0.075011184 0.092366208 1524.075605 1710051.503 0.032094933 0.028339426 5.21E-07 6.282778123 0.049229491 GIPPQQTPQDPPLSSDGMYEYGSIEK ddPTM_HeLa_A485_30min_R1 1 GIPPQQTPQDPPLSSDGMYEYGSIEK 26 0 D6RBP8;Q9UMX9-4;Q9UMX9-3;Q9UMX9 D6RBP8 SLC45A2 Membrane-associated transporter protein 0 0 58.974 0.011877 21779000 28425 17677 25842 49815 54005 22755 42870 33637 34196 71326 FALSE FALSE TRUE 34748.04318 19744.17138 35402.03118 52536.26731 48628.07258 23946.41661 33710.47428 25387.47301 41058.82354 53545.74086 0.648941309 0.368734676 0.661154942 0.981147454 0.908159488 0.447214218 0.629564065 0.474126842 0.766799056 1 15.7084842 -8.011848409 23.37330803 1.000000021 0.643563408 0.271476689 0.180914628 361.9205949 713962.1671 0.189992336 0.04905581 9.73E-09 8.011848409 -0.356436613 GIPVFT(ph)EDRDR ddPTM_HeLa_A486_30min_R1 1 GIPVFTEDRDR 11 1 Q9HCM2-2;Q9HCM2-3;Q9HCM2 Q9HCM2-2 PLXNA4 Plexin-A4 1 0 GIPVFT(1)EDRDR 68.277 0.017422 617710000 187850 380270 334940 204760 606920 454770 633640 651540 379380 387990 TRUE FALSE FALSE 174682.6851 350136.0203 464637.738 476691.628 530794.4343 398665.1012 475096.57 503198.565 412264.9639 290834.7786 0.600625159 1.203900104 1.597600329 1.639046163 1.82507208 1.370761444 1.63356175 1.730187041 1.417522917 1 18.14984027 -4.367538439 2.247611163 1.566361656 0.470908813 0.616063972 0.221600338 0.280471693 1.959374871 0.055176942 0.555582206 4.29E-05 4.367538439 -1.095452843 GIQLS(ph)PGVGSSAGPPGDLEDDEGLKHLQQEAEK ddPTM_HeLa_A485_30min_R1 3 GIQLSPGVGSSAGPPGDLEDDEGLKHLQQEAEK 33 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 GIQLS(0.999)PGVGS(0.001)S(0.001)AGPPGDLEDDEGLKHLQQEAEK;GIQLS(0.999)PGVGS(0.001)S(0.001)AGPPGDLEDDEGLKHLQQEAEK;GIQLS(0.999)PGVGS(0.001)SAGPPGDLEDDEGLKHLQQEAEK ;; 176.95 1.75E-15 332382000 232397 182339 128233 341587 250742 262749 397440 351760 193077 498580 TRUE FALSE FALSE 284092.9109 203661.9599 175671.7229 360247.0329 225777.2461 276506.1314 312523.6972 265490.3085 231825.7829 374293.1817 0.759011718 0.544124152 0.469342568 0.96247287 0.603209615 0.738742101 0.834970319 0.7093111 0.619369506 1 18.51380924 -14 0.17545695 2.181234156 0.628763616 0.305025594 0.13692254 169.418603 1.616127998 70.14158325 0.46242406 1.00E-14 14 -1.55247054 GIQLS(ph)PGVGSSAGPPGDLEDDEGLKHLQQEAEK ddPTM_HeLa_A486_30min_R1 4 GIQLSPGVGSSAGPPGDLEDDEGLKHLQQEAEK 33 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 GIQLS(0.997)PGVGS(0.003)SAGPPGDLEDDEGLKHLQQEAEK;GIQLS(0.996)PGVGS(0.002)S(0.002)AGPPGDLEDDEGLKHLQQEAEK;GIQLS(1)PGVGSSAGPPGDLEDDEGLKHLQQEAEK;GIQLS(0.999)PGVGS(0.001)SAGPPGDLEDDEGLKHLQQEAEK ;;; 228.94 1.11E-39 624023000 456261 418143 210554 267575 412522 518123 721810 661620 325955 891140 TRUE FALSE FALSE 424279.46 385007.8258 292086.1476 622928.1225 360779.6441 454202.2521 541205.5035 510983.5691 354209.0418 667992.7437 0.635155792 0.576365282 0.437259462 0.932537259 0.540095155 0.679950877 0.81019668 0.764953772 0.530258817 1 19.34947291 -14 0.149118678 2.158764951 0.557937785 0.346764737 0.14065827 154.4241799 1.369878101 53.44998472 0.719942438 1.00E-14 14 -1.600827166 GIQYIDLS(ph)SDSEDVVSPNCSNTVQEK ddPTM_HeLa_A486_30min_R1 1 GIQYIDLSSDSEDVVSPNCSNTVQEK 26 0 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 GIQYIDLS(0.455)S(0.455)DS(0.089)EDVVSPNCSNTVQEK 195.03 3.81E-21 108660000 94455 106010 61109 35884 119930 101530 124810 112380 76417 125730 TRUE FALSE FALSE 87834.19227 97609.38152 84772.04136 83539.76548 104887.2611 89004.26088 93581.21789 86793.52724 83040.88709 94246.38964 0.931963469 1.035682978 0.89947256 0.886397514 1.112904818 0.944378466 0.992942205 0.920921508 0.881104172 1 16.52414973 -7.273896566 23.76283403 0.92575962 0.972694706 0.056740024 0.068436132 1093.885229 2086630.771 0.036766149 0.017880086 5.32E-08 7.273896566 0.046935086 GIQYIDLSS(ph)DSEDVVSPNCSNTVQEK ddPTM_HeLa_A485_30min_R1 1 GIQYIDLSSDSEDVVSPNCSNTVQEK 26 0 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 GIQYIDLS(0.136)S(0.575)DS(0.289)EDVVSPNCSNTVQEK 178.46 3.70E-20 116510000 63262 66017 61211 67996 94561 68546 98607 98108 69452 91169 TRUE FALSE FALSE 77334.41365 73737.11388 83855.4961 71710.44931 85146.17482 72134.96257 77538.8089 74046.85917 83390.37935 68442.24614 1.129922205 1.077362565 1.22520082 1.047751255 1.244058745 1.053953759 1.132908595 1.08188821 1.218405065 1 16.06259949 GIQYIDLSS(ph)DSEDVVSPNCSNTVQEK ddPTM_HeLa_A486_30min_R1 1 GIQYIDLSSDSEDVVSPNCSNTVQEK 26 0 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 GIQYIDLS(0.209)S(0.637)DS(0.154)EDVVSPNCSNTVQEK 159.76 5.19E-11 140860000 94220 101900 65896 37935 103860 92225 102900 113920 77099 99670 TRUE FALSE FALSE 87615.66455 93825.07289 91412.69596 88314.59713 90832.91034 80847.21718 77153.33163 87982.90286 83782.0034 74711.98326 1.172712338 1.255823615 1.223534592 1.182067364 1.215774316 1.082118472 1.032676798 1.177627725 1.121399804 1 16.18905204 -6.260115916 24.81796666 1.090735804 1.21173124 0.61927057 0.049669713 79.65391578 1493693.336 0.01697735 0.016111225 5.49E-07 6.260115916 0.120995436 GIRPAINVGLSVSR ddPTM_HeLa_A485_30min_R1 2 GIRPAINVGLSVSR 14 1 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 256.96 2.79E-40 166235000 101757 129585 117976 99098 123387 147758 162315 173946 97641 161952 FALSE FALSE TRUE 124392.4936 144738.8385 161620.2318 104511.4728 111102.157 155494.3804 127635.0743 131285.4708 117236.6531 121580.3469 1.023129945 1.190478907 1.329328595 0.859608279 0.913816746 1.278943385 1.049800214 1.079824775 0.964273059 1 16.89155051 -5.228885559 0.193157309 0.981581371 1.219782117 0.0609393 0.141378462 33.9869222 1.819190223 0.43080801 2.055767358 5.90E-06 5.228885559 0.238200746 GIRPAINVGLSVSR ddPTM_HeLa_A486_30min_R1 2 GIRPAINVGLSVSR 14 1 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 259.61 2.07E-40 140217000 93447 103961 115580 35768 141432 109078 121533 110231 133212 118958 FALSE FALSE TRUE 86896.84786 95722.75174 160335.6713 83269.71161 123692.2798 95621.06538 91124.15796 85133.80763 144758.9234 89170.14251 0.9745061 1.073484342 1.79808697 0.933829523 1.387149064 1.072343978 1.021913338 0.954734457 1.623401279 1 16.4442731 -6.303852022 24.60146655 1.124614191 1.239254119 0.027840676 0.288353682 1734.454841 1006065.183 0.100524887 0.088655216 4.97E-07 6.303852022 0.114639927 GIS(ph)DPLTVFEQTEAAAR ddPTM_HeLa_A486_30min_R1 1 GISDPLTVFEQTEAAAR 17 0 O00116;B8ZZ81;A0A1B0GWA2;A0A2R8YEL0 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 0 GIS(1)DPLTVFEQTEAAAR 61.097 0.023108 12824000 1142.5 0 0 0 0 0 0 0 1914.2 1207.5 TRUE FALSE FALSE 1062.41665 0 0 0 0 0 0 0 2080.124397 905.1341405 1.173767072 0 0 0 0 0 0 0 2.298139363 1 9.821987805 -7.748856114 24.99996477 1.649069663 0.117376511 0.636888339 0.453319588 111.73526 221994.2866 0.294323269 0.109581705 1.78E-08 7.748856114 -1.531693152 GIS(ph)HVIVDEIHER ddPTM_HeLa_A486_30min_R1 1 GISHVIVDEIHER 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 GIS(1)HVIVDEIHER 120.66 6.25E-05 60867000 8941.2 12197 11181 3227.5 15114 18447 8573.9 13421 15236 11093 TRUE FALSE FALSE 8314.468052 11230.4653 15510.58264 7513.783109 13218.26119 16171.1967 6428.619535 10365.33128 16556.66875 8315.240597 0.999907093 1.350588136 1.865319765 0.903615839 1.589642661 1.94476594 0.773112871 1.246546165 1.991123234 1 13.02154229 -10.33148248 4.514146214 0.999614146 1.401984014 0.079542095 0.415200083 0.00158348 0.000234504 0.394818774 0.095667361 4.66E-11 10.33148248 0.402369868 GIS(ph)PIVFDR ddPTM_HeLa_A485_30min_R1 11 GISPIVFDR 9 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR ;;;;;;;;;; 203.8 7.04E-10 20155493000 2941582 4133357 3961948 2704814 3277999 3082499 3217936 3122079 2986628 3258371 TRUE FALSE FALSE 3595926.768 4616717.146 5427637.436 2852571.14 2951629.91 3243893.881 2530397.685 2356384.23 3586016.845 2446119.076 1.470053851 1.887364026 2.218877033 1.166162011 1.20665831 1.32613899 1.03445401 0.963315422 1.466002567 1 21.2220632 -5.281547925 24.4702283 1.167448288 1.861624846 0.675098987 0.220198241 339.0940789 412645.1863 0.062184341 0.092376195 5.23E-06 5.281547925 0.694176558 GIS(ph)PIVFDR ddPTM_HeLa_A486_30min_R1 10 GISPIVFDR 9 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR ;;;;;;;;; 190.26 1.55E-08 20176637000 4408303 4806936 3767014 1089039 3892106 3601763 3667673 3599339 3717990 4213061 TRUE FALSE FALSE 4099303.724 4426016.885 5225702.705 2535337.829 3403921.773 3157414.101 2749982.423 2779848.083 4040268.367 3158083.103 1.298035419 1.401488416 1.654707154 0.802809092 1.077844269 0.999788162 0.870775826 0.880232721 1.279342004 1 21.5906177 -5.263639553 24.99998715 0.981709047 1.446418142 0.672165263 0.148498525 110.6016661 1256741.982 0.04084292 0.064093461 5.45E-06 5.263639553 0.464709095 GIS(ph)PVVSEHR ddPTM_HeLa_A485_30min_R1 4 GISPVVSEHR 10 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 GIS(1)PVVSEHR;GIS(1)PVVSEHR;GIS(1)PVVSEHR;GIS(1)PVVSEHR ;;; 140.01 1.17E-05 1771180000 781953 928910 1167170 577640 1317160 881305 978710 968260 1071640 948790 TRUE FALSE FALSE 955895.7471 1037537.944 1598954.753 609195.0105 1186018.926 927448.767 769600.6132 730792.7168 1286708.318 712274.1142 1.342033535 1.456655413 2.244858715 0.855281693 1.665115862 1.302095287 1.08048376 1.025999264 1.806479125 1 19.44207303 -5.278396393 24.99974143 1.261669166 1.658729956 0.235868046 0.356074339 1241.478126 1830309.557 0.098413445 0.14637498 5.27E-06 5.278396393 0.39706079 GIS(ph)PVVSEHR ddPTM_HeLa_A486_30min_R1 4 GISPVVSEHR 10 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 GIS(1)PVVSEHR;GIS(1)PVVSEHR;GIS(1)PVVSEHR;GIS(1)PVVSEHR ;;; 154.36 1.78E-06 1581690000 1050670 1472110 1432690 60781 1655060 1107230 1182460 1182850 1240290 619303 TRUE FALSE FALSE 977023.4587 1355454.642 1987465.937 141501.2397 1447466.942 970631.2201 886596.0012 913540.8764 1347799.336 464225.4978 2.104631183 2.91981946 4.281251129 0.304811434 3.118025504 2.090861499 1.909839088 1.967881731 2.903328969 1 18.82446624 -9.992529121 0.162104695 1.04E-15 2.957428265 0.147898184 0.983081831 50.23634286 1.739729722 31.23241548 5.420732592 1.02E-10 9.992529121 2.957428265 GIS(ph)PVVSEHRK ddPTM_HeLa_A485_30min_R1 4 GISPVVSEHRK 11 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 GIS(1)PVVSEHRK;GIS(1)PVVSEHRK;GIS(1)PVVSEHRK;GIS(1)PVVSEHRK ;;; 76.588 0.0077626 2087070000 1184917 1749800 1678410 840669 2347820 1515400 1840140 2100290 1704430 1555070 TRUE FALSE FALSE 1448497.699 1954423.889 2299323.703 886592.6188 2114062.797 1594744.001 1446979.056 1585190.584 2046493.467 1167419.668 1.240768627 1.674139937 1.969577665 0.759446361 1.810885027 1.366041745 1.239467773 1.357858385 1.753005816 1 20.15489185 -10.67065071 2.648409579 0.938129806 1.461499732 0.147047459 0.334836983 22896725.7 20003466.73 9584499.919 0.081576091 2.13E-11 10.67065071 0.523369927 GIS(ph)PVVSEHRK ddPTM_HeLa_A486_30min_R1 4 GISPVVSEHRK 11 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 GIS(1)PVVSEHRK;GIS(1)PVVSEHRK;GIS(1)PVVSEHRK;GIS(1)PVVSEHRK ;;; 107.2 0.0005555 2144240000 2326960 2616730 2105850 300728 3128510 2216820 2693500 2700780 2055800 1775010 TRUE FALSE FALSE 2163852.12 2409370.785 2921291.517 700109.982 2736103.104 1943331.287 2019557.811 2085871.352 2233998.399 1330535.943 1.62630114 1.810827282 2.195575048 0.526186448 2.056391726 1.460562789 1.517852879 1.5676926 1.679021459 1 20.34357605 -11.76172629 0.275201082 8.45E-20 1.655031495 0.153057867 0.424073463 106.8226071 3.114682196 64.53350586 0.512994086 1.73E-12 11.76172629 1.655031495 GIS(ph)SLPR ddPTM_HeLa_A485_30min_R1 1 GISSLPR 7 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 GIS(0.797)S(0.203)LPR 108.46 0.0031675 1515100000 3193900 4333500 4417200 2763700 4276100 3801800 4069800 4436800 3397900 3745500 TRUE FALSE FALSE 3904372.036 4840265.129 6051306.095 2914673.933 3850356.47 4000856.369 3200253.983 3348667.843 4079827.363 2811815.781 1.388558974 1.721401936 2.152099059 1.036580687 1.369348766 1.422872863 1.138144968 1.190927182 1.450958271 1 21.42307065 -5.275275381 24.96622975 1.247824665 1.750758215 0.534213937 0.223853977 595.1321077 1073878.653 0.062918155 0.093854497 5.31E-06 5.275275381 0.502933549 GISCLVDAFLGISRPR ddPTM_HeLa_A485_30min_R1 2 GISCLVDAFLGISRPR 16 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 0 0 ; ; 226.65 3.57E-25 32495000 27066 36422 41764 23769 43197 29161 37111 39690 29565 36013 FALSE FALSE TRUE 33086.73832 40681.23607 57214.24155 25067.44028 38896.15501 30687.82487 29181.93168 29955.96527 35498.42431 27035.62187 1.223820132 1.504727218 2.116253949 0.927200432 1.438700215 1.135088552 1.079388217 1.108018355 1.313024146 1 14.72257392 -5.287334549 24.99626512 1.15689397 1.603913343 0.434304302 0.246341146 710.9258473 686245.6929 0.069024872 0.102417254 5.16E-06 5.287334549 0.447019373 GISCLVDAFLGISRPR ddPTM_HeLa_A486_30min_R1 2 GISCLVDAFLGISRPR 16 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 0 0 ; ; 235.88 8.92E-33 22882800 30594 31474 30889 9589.9 34490 25657 31070 29974 28716 31960 FALSE FALSE TRUE 28449.51859 28979.88561 42850.04804 22325.77185 30163.94259 22491.7002 23295.95738 23149.57453 31205.126 23957.00798 1.18752386 1.209662143 1.788622689 0.931909856 1.259086386 0.938835944 0.972406796 0.966296566 1.30254688 1 14.54816012 -5.312335696 24.99999736 1.052078005 1.376711251 0.390308693 0.195611372 360.6603632 177153.6243 0.054437184 0.080743495 4.87E-06 5.312335696 0.324633245 GISHVIVDEIHER ddPTM_HeLa_A485_30min_R1 1 GISHVIVDEIHER 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 178.15 3.01E-13 88964000 22705 36431 42088 28976 43297 27853 38021 34805 37921 39770 FALSE FALSE TRUE 27755.64892 40691.28854 57658.10263 30558.88551 38986.19866 29311.34001 29897.50275 26269.01918 45531.39687 29856.07091 0.929648412 1.362915055 1.931201959 1.02354009 1.305804731 0.981754769 1.001387719 0.879855198 1.525029767 1 14.8657367 GISLNPEQWSQLKEQIS(ph)DIDDAVR ddPTM_HeLa_A485_30min_R1 1 GISLNPEQWSQLKEQISDIDDAVR 24 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 GISLNPEQWSQLKEQIS(1)DIDDAVR 203.83 6.44E-29 54050000 23856 39425 39892 27466 67318 58878 98264 131940 37939 46896 TRUE FALSE FALSE 29162.6849 44035.4108 54649.71084 28966.39803 60615.58355 61960.76104 77269.09366 99581.50813 45553.0093 35205.69026 0.828351459 1.25080379 1.552297667 0.822776029 1.721755293 1.759964386 2.194789907 2.828562866 1.293910415 1 15.10352101 -5.928088194 5.003076543 1.933914742 1.156581155 0.290990323 0.506982032 0.237473505 11.10995325 0.158116377 0.179452674 1.18E-06 5.928088194 -0.777333587 GISLNPEQWSQLKEQIS(ph)DIDDAVR ddPTM_HeLa_A486_30min_R1 1 GISLNPEQWSQLKEQISDIDDAVR 24 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 GISLNPEQWSQLKEQIS(1)DIDDAVR 130.25 1.92E-06 58489000 32216 33550 37377 20318 76788 39282 57698 67049 27491 47030 TRUE FALSE FALSE 29957.82476 30891.37581 51850.37539 47301.33081 67156.53302 34435.78623 43261.35013 51783.40637 29873.94201 35253.38189 0.849785841 0.876267018 1.470791527 1.341752997 1.90496711 0.976808022 1.227154611 1.468891879 0.847406417 1 15.10547404 -7.774054298 24.99905589 0.923703008 1.271566618 0.16788061 0.30321751 482.642973 956426.4926 0.297656994 0.078974882 1.68E-08 7.774054298 0.34786361 GISNMLDVNGLFTLSHITQLVLSHNK ddPTM_HeLa_A485_30min_R1 1 GISNMLDVNGLFTLSHITQLVLSHNK 26 0 Q15404 Q15404 RSU1 Ras suppressor protein 1 0 0 187.26 4.36E-28 8293900 6506.4 6087 6399.9 4990.2 7473.5 6081.5 11038 10867 4424.4 8583.1 FALSE FALSE TRUE 7953.726233 6798.8217 8767.489332 5262.80199 6729.412099 6399.917936 8679.641128 8201.851211 5312.336497 6443.49113 1.234381498 1.05514566 1.360673764 0.81676251 1.044373611 0.993237642 1.34704013 1.272889346 0.824450036 1 12.65362685 -5.234671395 24.98634816 1.064741608 1.200574778 0.165390692 0.173174776 1798.763703 1679038.667 0.048475257 0.083928522 5.83E-06 5.234671395 0.13583317 GISNMLDVNGLFTLSHITQLVLSHNK ddPTM_HeLa_A486_30min_R1 1 GISNMLDVNGLFTLSHITQLVLSHNK 26 0 Q15404 Q15404 RSU1 Ras suppressor protein 1 0 0 143.32 3.15E-16 5652300 2988.5 5225.1 4415 851.3 4933.4 5028.3 6398.6 6417.6 6955.4 5793.8 FALSE FALSE TRUE 2779.021583 4811.044047 6124.606238 1981.869422 4314.60697 4407.95947 4797.602603 4956.452575 7558.299672 4342.994769 0.639886007 1.107771089 1.410226483 0.45633705 0.993463543 1.014958503 1.104676118 1.141252255 1.740342799 1 12.0844745 -7.203654905 1.898875703 1.361152624 0.948279305 0.229303027 0.297365927 0.531027728 3.590809716 0.207421384 0.087965622 6.26E-08 7.203654905 -0.41287332 GISQDRS(ph)PLVK ddPTM_HeLa_A485_30min_R1 5 GISQDRSPLVK 11 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 GISQDRS(1)PLVK;GISQDRS(1)PLVK;GIS(0.003)QDRS(0.997)PLVK;GIS(0.002)QDRS(0.998)PLVK;GIS(0.014)QDRS(0.986)PLVK ;;;; 119.62 9.55E-05 3113310000 3117110 3660240 3043300 3952810 4225340 4489490 5459620 6223680 3279030 5677420 TRUE FALSE FALSE 3810500.366 4088273.228 4169143.312 4168742.001 3804650.314 4724552.754 4293127.586 4697312.722 3937101.244 4262143.679 0.894033766 0.959205868 0.978179908 0.978085751 0.892661205 1.108492137 1.007269559 1.102100979 0.923737335 1 22.0231478 -6.252491253 24.99626275 1.033385662 0.945665059 0.373475018 0.056523501 702.493296 1962391.925 0.017940382 0.017684941 5.59E-07 6.252491253 -0.087720603 GISQDRS(ph)PLVK ddPTM_HeLa_A486_30min_R1 6 GISQDRSPLVK 11 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 GIS(0.001)QDRS(0.999)PLVK;GIS(0.001)QDRS(0.999)PLVK;GIS(0.005)QDRS(0.995)PLVK;GIS(0.002)QDRS(0.998)PLVK;GIS(0.002)QDRS(0.998)PLVK;GISQDRS(1)PLVK ;;;;; 117.08 0.00014233 4367600000 6438380 6469400 4553610 2400830 7123840 5994610 7178730 6332770 5435940 8546950 TRUE FALSE FALSE 5987082.81 5956741.183 6316889.742 5589253.571 6230301.56 5255055.967 5382535.825 4890936.514 5907131.656 6406738.089 0.934497825 0.929761932 0.985975961 0.872402382 0.972460786 0.820238926 0.840136705 0.763405097 0.922018596 1 22.61115858 -6.262556924 24.99367085 0.852558735 0.937413163 0.19871147 0.066023461 131.3378519 2937311.734 0.02140336 0.019944029 5.46E-07 6.262556924 0.084854428 GISQEQMQEFR ddPTM_HeLa_A485_30min_R1 4 GISQEQMQEFR 11 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ;;; ;;; 202.03 7.82E-14 359095000 138247 209085 189415 153588 203346 224109.7 221894 265436 193746 230011 FALSE FALSE TRUE 168999.5682 233535.672 259487.4907 161978.1235 183100.1582 235843.7374 174484.5342 200337.4048 232629.0451 172673.4907 0.978723297 1.352469745 1.502763914 0.938060167 1.060383719 1.365836391 1.010488254 1.160209387 1.347219217 1 17.39768709 -10.83915844 2.595531443 0.926470567 1.192313937 0.08823675 0.183819903 34959602.2 23138524.51 15991726.2 0.046575825 1.45E-11 10.83915844 0.26584337 GISQEQMQEFR ddPTM_HeLa_A486_30min_R1 1 GISQEQMQEFR 11 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 94.692 0.028108 131830000 86046 93771 100130 34903 107760 101640 95380 110130 82436 101980 FALSE FALSE TRUE 80014.61974 86340.24445 138903.0176 81255.9479 94243.73598 89100.6902 71514.91517 85055.80312 89581.61885 76443.54422 1.046715201 1.129464173 1.817066686 1.062953696 1.232854088 1.16557508 0.935525896 1.11266169 1.171866372 1 16.22210705 -6.076508168 1.592060241 1.06941753 1.296594747 0.163515312 0.212152987 0.714600937 3.65092959 0.088919449 0.093034254 8.38E-07 6.076508168 0.227177217 GISS(ph)LPR ddPTM_HeLa_A485_30min_R1 6 GISSLPR 7 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 GIS(0.338)S(0.662)LPR;GIS(0.059)S(0.941)LPR;GIS(0.049)S(0.951)LPR;GIS(0.063)S(0.937)LPR;GIS(0.096)S(0.904)LPR;GIS(0.222)S(0.778)LPR ;;;;; 110.22 0.0030007 4160265000 3372864 4492400 4696900 2948422 4504830 3815409 4429300 4580960 3451266 3888266 TRUE FALSE FALSE 4123145.961 5017747.101 6434478.764 3109486.828 4056313.308 4015177.915 3482943.871 3457472.377 4143903.429 2918992.844 1.41252349 1.718999452 2.204348934 1.065260175 1.389627698 1.375535375 1.193200551 1.184474427 1.419634665 1 21.47703924 -5.279222786 24.9998648 1.251084857 1.772661559 0.561356593 0.22076827 596.9483762 839186.9833 0.06192987 0.092078314 5.26E-06 5.279222786 0.521576702 GISS(ph)LPR ddPTM_HeLa_A486_30min_R1 5 GISSLPR 7 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 GIS(0.1)S(0.9)LPR;GIS(0.077)S(0.923)LPR;GIS(0.049)S(0.951)LPR;GIS(0.039)S(0.961)LPR;GIS(0.148)S(0.852)LPR ;;;; 115.49 0.0024999 4451910000 5394530 5454320 4957720 1470400 6193080 4560710 5044410 5377000 4777660 5865120 TRUE FALSE FALSE 5016401.304 5022099.819 6877481.956 3423165.51 5416286.158 3998055.97 3782245.264 4152774.479 5191791.416 4396455.776 1.141010295 1.142306456 1.564324152 0.778619343 1.231966482 0.909381596 0.860294168 0.94457324 1.180903819 1 22.06790953 -5.272692988 24.99906482 0.985976319 1.268522935 0.391763084 0.168750396 748.7094457 1663201.727 0.046778888 0.0700834 5.34E-06 5.272692988 0.282546616 GITGVEDK ddPTM_HeLa_A485_30min_R1 2 GITGVEDK 8 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 ; ; 130.28 0.0027488 55014000 72536 72883 66571 104131 93937 84412 102163 97708 77284 146987 FALSE FALSE TRUE 88671.38295 81406.03285 91198.38315 109819.4129 84584.30245 88831.68179 80335.04046 73744.9598 92794.18991 110345.846 0.803576992 0.737735364 0.826477719 0.995229244 0.766538166 0.805029686 0.728029585 0.66830753 0.840939585 1 16.75167279 GITGVEDKES(ph)WHGKPLPK ddPTM_HeLa_A485_30min_R1 1 GITGVEDKESWHGKPLPK 18 2 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 1 0 GITGVEDKES(1)WHGKPLPK 91.128 0.00032133 469160000 145220 161100 116230 224740 210030 228220 289950 340880 173210 379240 TRUE FALSE FALSE 177523.688 179939.2436 159228.3137 237016.9771 189118.6757 240169.2463 227999.8138 257278.6455 207971.6582 284702.4474 0.623541138 0.63202563 0.55927975 0.832507691 0.664267826 0.843579845 0.800835454 0.903675567 0.730487778 1 18.11909537 -3.36759448 0.124889146 1.088784122 4.00E-14 0.654259784 0.07833085 27.98026072 0.438439274 0.589200614 5.130586448 0.000428949 3.36759448 -1.088784122 GITGVEDKES(ph)WHGKPLPK ddPTM_HeLa_A486_30min_R1 2 GITGVEDKESWHGKPLPK 18 2 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 1 0 GITGVEDKES(1)WHGKPLPK;GITGVEDKES(1)WHGKPLPK ; 150.83 1.19E-08 292030000 579000 446590 201092 310890 420250 577150 774870 700260 392950 913160 TRUE FALSE FALSE 538415.09 411200.5819 278960.2078 723767.6315 367538.3263 505947.101 580989.3303 540826.0846 427011.2224 684498.7923 0.786582966 0.60073237 0.407539372 1.057368749 0.536945179 0.739149735 0.848780651 0.790105243 0.623830498 1 19.38468847 -14 0.147972854 2.006972401 0.619432528 0.20312387 0.171589915 215.8332646 1.906829188 64.1292523 0.891274417 1.00E-14 14 -1.387539873 GITGVEDKESWHGKPLPK ddPTM_HeLa_A485_30min_R1 3 GITGVEDKESWHGKPLPK 18 2 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 ;; ;; 213.99 2.71E-26 1382983000 1062568 1321970 896208 776744 1917242 1768223 2510580 3186310 1383511 1796993 FALSE FALSE TRUE 1298932.586 1476562.892 1227752.634 819175.5579 1726354.655 1860804.422 1974174.073 2404862.477 1661168.967 1349035.716 0.962860041 1.094532097 0.910096463 0.607230445 1.279695292 1.3793589 1.463396447 1.782652933 1.231375083 1 20.36349711 -5.939176366 6.904387915 1.415937932 0.909918044 0.517647498 0.217728883 0.164775565 15.00834868 0.068124345 0.077260262 1.15E-06 5.939176366 -0.506019888 GITGVEDKESWHGKPLPK ddPTM_HeLa_A486_30min_R1 1 GITGVEDKESWHGKPLPK 18 2 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 215.45 2.42E-34 403430000 933190 721270 445480 129300 1049500 827800 1007600 1073900 633270 732480 FALSE FALSE TRUE 867778.2 664113.9384 617981.7864 301016.9345 917861.9238 725674.4525 755487.8227 829396.4131 688162.3535 549062.2404 1.58047328 1.209542179 1.125522283 0.548238273 1.671690122 1.321661551 1.375960259 1.510569025 1.253341248 1 19.06661017 GITINAAHVEYSTAAR ddPTM_HeLa_A485_30min_R1 1 GITINAAHVEYSTAAR 16 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 84.829 0.0028973 69502000 14759 21471 22954 12003 21928 23054 22151 26188 19479 19102 FALSE FALSE TRUE 18042.08863 23981.84668 31445.6398 12658.6935 19744.77133 24261.07179 17418.25789 19765.35194 23388.25663 14340.22295 1.258145616 1.672348245 2.192827818 0.882740355 1.37688036 1.691819708 1.214643451 1.378315526 1.630954882 1 13.80777983 -12.46235804 0.183525549 2.74E-12 1.586166666 0.147232073 0.334918657 143.6698238 2.317764576 56.58429291 1.080315883 3.45E-13 12.46235804 1.586166666 GITINAAHVEYSTAAR ddPTM_HeLa_A486_30min_R1 1 GITINAAHVEYSTAAR 16 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 186.75 9.35E-14 39420000 26720 33176 36600 7041.6 46507 29892 35036 35817 33849 35307 FALSE FALSE TRUE 24847.06598 30547.01294 50772.50018 16393.20066 40673.6584 26204.22896 26269.62223 27662.25098 36783.05857 26465.89739 0.938833307 1.154202802 1.91841219 0.619408457 1.53683277 0.990112996 0.992583846 1.045203591 1.389828504 1 14.69184695 GIVEFASKPAAR ddPTM_HeLa_A485_30min_R1 2 GIVEFASKPAAR 12 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 122.34 0.00056261 50585000 48580 65688 64477 57143 80793 70738 81364 95882 68942 81881 FALSE FALSE TRUE 59386.4534 73369.64019 88329.72541 60264.5774 72748.96524 74441.7323 63979.91672 72366.78916 82778.02703 61469.57361 0.966111361 1.193592795 1.43696662 0.980396867 1.183495524 1.211033816 1.040838792 1.177278203 1.346650419 1 15.90758486 GIVEFSGK(ac)PAAR ddPTM_HeLa_A485_30min_R1 4 GIVEFSGKPAAR 12 1 Q15233-2;Q15233;H7C367;C9IZL7 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 1 ;;; GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR 240.15 1.42E-28 784165000 380814 596668 633954 357896 780910 464642 630902 645793 524075 603163 FALSE TRUE FALSE 465524.7605 666443.1323 868479.9656 377446.9522 703159.8585 488969.9366 496104.6337 487411.2542 629252.0454 452805.5645 1.028089752 1.471808618 1.917997555 0.833574015 1.552895798 1.079867332 1.095623978 1.076425054 1.389673835 1 18.78853216 -5.275206632 24.99964763 1.162041366 1.472549692 0.22705023 0.274443998 1186.913253 2155286.893 0.07604797 0.113477815 5.31E-06 5.275206632 0.310508326 GIVEFSGK(ac)PAAR ddPTM_HeLa_A486_30min_R1 4 GIVEFSGKPAAR 12 1 Q15233-2;Q15233;H7C367;C9IZL7 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 1 ;;; GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR 239.54 1.52E-28 707562000 600144 615139 606320 161711.8 721839 515414 635250 647787 562806 609151 FALSE TRUE FALSE 558077.0047 566393.1453 841103.3418 376473.2429 631299.2217 451827.461 476303.731 500300.0412 611590.4772 456615.6247 1.22220304 1.240415603 1.842038021 0.824486116 1.382561585 0.989513798 1.043117461 1.095669999 1.339398926 1 18.8006207 -5.279140215 24.99761849 1.105629461 1.415438651 0.328191778 0.221130906 979.3618895 1383079.969 0.060641398 0.090161897 5.26E-06 5.279140215 0.30980919 GIVEFSGKPAAR ddPTM_HeLa_A485_30min_R1 1 GIVEFSGKPAAR 12 1 Q15233-2;Q15233;H7C367;C9IZL7 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 125.54 0.0017707 0 116000 142650 130700 151450 159110 164490 198070 215100 134750 200230 FALSE FALSE TRUE 141803.7998 159331.6766 179051.3689 159723.33 143268.4497 173102.4421 155750.7264 162346.3877 161793.089 150316.346 0.943369125 1.059975717 1.19116366 1.062581245 0.953112909 1.151587613 1.036152957 1.080031494 1.076350599 1 17.19764238 -4.27302026 5.402313895 1.072512568 0.939219121 0.250971037 0.064333272 0.189947548 20.19550899 0.015925773 0.091694917 5.33E-05 4.27302026 -0.133293447 GIVVTAYS(ph)PLGSPDRPWAKPEDPSLLEDPR ddPTM_HeLa_A486_30min_R1 1 GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR 30 2 P15121;E9PCX2 P15121 AKR1B1 Aldose reductase 1 0 GIVVT(0.012)AYS(0.525)PLGS(0.463)PDRPWAKPEDPSLLEDPR 121.52 8.26E-06 155140000 133870 162090 137240 67130 189560 195850 216130 205610 161300 210130 TRUE FALSE FALSE 124486.4043 149245.3981 190383.0034 156282.0326 165783.6172 171688.0183 162051.988 158797.0914 175281.6139 157512.0803 0.79032925 0.947517154 1.208688267 0.992190772 1.052513667 1.089999052 1.0288226 1.008158175 1.112813783 1 17.26510295 -4.463688648 4.276206062 1.060294121 0.80862732 0.643467662 0.062474298 0.128766971 4.584134096 0.015195032 0.065437638 3.44E-05 4.463688648 -0.251666801 GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR ddPTM_HeLa_A486_30min_R1 2 GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR 30 2 P15121;E9PCX2 P15121 AKR1B1 Aldose reductase 0 0 ; ; 71.528 0.0032579 50279000 45973 58707 43534 25474.9 67038 58588 67869 71702 56286 114027 FALSE FALSE TRUE 42750.5301 54054.84351 60391.53068 59306.85463 58629.46894 51360.00824 50887.45835 55377.01984 61164.9158 85473.89701 0.500158898 0.632413467 0.7065494 0.693859257 0.685934197 0.6008853 0.595356713 0.64788224 0.715597603 1 16.38319628 -8.252574973 2.07401731 0.99986306 0.636394057 0.789723905 0.056834683 0.498602336 3.294702171 0.058118208 0.016045969 5.59E-09 8.252574973 -0.363469003 GIWKPET(ph)PQDSSGLAPFK ddPTM_HeLa_A485_30min_R1 1 GIWKPETPQDSSGLAPFK 18 1 A0A0A0MR88;A0A096LPC5;Q641Q2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21A 1 0 GIWKPET(1)PQDSSGLAPFK 119.79 4.42E-05 122340000 133010 113600 63123 169470 160770 136640 192270 225310 99730 252910 TRUE FALSE FALSE 162597.6156 126884.5318 86474.82447 178727.717 144763.1743 143794.2591 151189.9438 170052.3692 119744.8962 189864.1915 0.856389056 0.668291008 0.455456207 0.941345051 0.762456434 0.757353232 0.796305731 0.895652666 0.6306871 1 17.53460831 -14 0.157033726 1.892008618 0.683628413 0.22311216 0.135032105 200.8060157 1.828202326 56.01508583 0.608029239 1.00E-14 14 -1.208380205 GIYAYGFEKPSAIQQR ddPTM_HeLa_A485_30min_R1 3 GIYAYGFEKPSAIQQR 16 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KTB5;J3QR64;J3QLN6;J3QKZ9;J3KS25;J3KS93;J3KSN7;E7EMV8;F8WE11;E9PBH4;J3QQP0;J3KT04;I3L3H2;P38919 P60842;I3L3H2 EIF4A1;EIF4A2;EIF4A3 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 0 0 ;; ;; 201.16 3.26E-18 815031000 369800 499090 501490 398820 607800 516470 571750 651250 477660 492580 FALSE FALSE TRUE 452060.7342 557454.234 687012.0197 420606.5267 547285.2979 543511.5706 449590.9417 491529.9164 573521.9806 369788.8713 1.222483339 1.507493268 1.857849365 1.137423431 1.479993965 1.469788879 1.215804413 1.329217709 1.550944404 1 18.49634228 -12.3638858 0.255636309 1.11E-16 1.462953318 0.27578353 0.199468105 99.87057269 2.101691545 53.38380233 0.285718896 4.33E-13 12.3638858 1.462953318 GIYAYGFEKPSAIQQR ddPTM_HeLa_A486_30min_R1 2 GIYAYGFEKPSAIQQR 16 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KTB5;J3QR64;J3QLN6;J3QKZ9;J3KS25;J3KS93;J3KSN7;E7EMV8;F8WE11;E9PBH4;J3QQP0;J3KT04;I3L3H2;P38919 P60842;I3L3H2 EIF4A1;EIF4A2;EIF4A3 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 0 0 ; ; 165.89 1.77E-10 107460000 179145 216893 175598 80672 258560 195614 231280 223110 183202 219389 FALSE FALSE TRUE 166587.8606 199705.6088 243594.2483 187808.4929 226128.9938 171481.1335 173411.2978 172312.7235 199082.0969 164452.5664 1.012984256 1.214366021 1.481243216 1.142022268 1.375040832 1.042739176 1.054476081 1.047795892 1.210574582 1 17.327312 -6.28198421 24.85036876 1.073064308 1.250811189 0.314767004 0.12822167 952.544581 1152163.593 0.045221024 0.039922007 5.22E-07 6.28198421 0.17774688 GK(ac)GGK(ac)GLGK ddPTM_HeLa_A485_30min_R1 2 GKGGKGLGK 9 2 P62805 P62805 HIST1H4A Histone H4 0 2 ; GK(1)GGK(1)GLGK;GK(1)GGK(1)GLGK 144.09 0.0003672 151971000 62970 107957 80623 76644 111532 85667 141924 571380 191457 724600 FALSE TRUE FALSE 76977.45926 120581.632 110448.8027 80830.86765 100427.4825 90152.39165 111600.778 431248.1591 229880.6638 543970.5553 0.141510342 0.22166941 0.203041877 0.148594197 0.184619336 0.165730279 0.205159593 0.792778497 0.422597623 1 19.05316904 -7.712515582 0.788266967 0.965497845 0.157990108 0.785164787 0.133387915 0.252321572 0.339189572 0.121565964 0.048061687 1.94E-08 7.712515582 -0.807507737 GK(ac)GGK(ac)GLGK ddPTM_HeLa_A486_30min_R1 2 GKGGKGLGK 9 2 P62805 P62805 HIST1H4A Histone H4 0 2 ; GK(1)GGK(1)GLGK;GK(1)GGK(1)GLGK 130.75 0.001476 89450000 139690 212180 145326 85659 247710 226710 266040 237420 164121 184950 FALSE TRUE FALSE 129898.4524 195366.0841 201600.1192 199418.481 216639.902 198740.8252 199473.9781 183364.6488 178347.1404 138637.3162 0.936966006 1.409188301 1.454154803 1.438418504 1.562637737 1.433530529 1.438818809 1.322621166 1.286429551 1 17.08095611 -8.221771894 1.435454723 1.001073403 1.395000288 0.335507254 0.157944051 0.918268601 3.498653283 0.152888977 0.045045388 6.00E-09 8.221771894 0.393926885 GK(ac)GGK(ac)GLGK(ac)GGAK ddPTM_HeLa_A485_30min_R1 2 GKGGKGLGKGGAK 13 3 P62805 P62805 HIST1H4A Histone H4 0 3 ; GK(1)GGK(1)GLGK(1)GGAK;GK(1)GGK(1)GLGK(1)GGAK 191.52 5.74E-14 2517300000 1186710 1410830 1322680 1570830 1689970 1409550 2167730 4014200 2253570 6635700 FALSE TRUE FALSE 1450689.545 1575814.296 1811994.373 1656640.465 1521710.653 1483351.858 1704576.777 3029711.156 2705840.828 4981542.111 0.291212944 0.316330618 0.363741655 0.332555748 0.305469796 0.297769611 0.342178534 0.608187402 0.543173332 1 22.24816099 -8.102065719 0.766267333 0.998279252 0.309747955 0.935867612 0.054031786 0.176225297 0.23035979 0.053146025 0.019794031 7.91E-09 8.102065719 -0.688531297 down GK(ac)MSSYAFFVQTCR ddPTM_HeLa_A485_30min_R1 2 GKMSSYAFFVQTCR 14 1 Q5T7C4;P09429;B2RPK0;D6R9A6;P26583 Q5T7C4;D6R9A6 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 0 1 ; GK(1)MSSYAFFVQTCR;GK(1)MSSYAFFVQTCR 272.5 4.40E-51 114606000 23773.6 33679 35067 22504.8 47169 45184 74102 116270 102197 127691 FALSE TRUE FALSE 29061.9553 37617.46608 48039.74256 23734.18024 42472.68874 47549.76437 58269.50234 87754.6002 122707.0005 95859.98368 0.303170877 0.392420952 0.501144907 0.247592158 0.44307006 0.496033512 0.607860549 0.915445599 1.280064901 1 16.54864107 -7.209928986 1.604307681 1.145606346 0.388601639 0.902827325 0.099516211 0.110242171 0.519715916 0.073978839 0.029949416 6.17E-08 7.209928986 -0.757004706 down GK(ac)MSSYAFFVQTCR ddPTM_HeLa_A486_30min_R1 2 GKMSSYAFFVQTCR 14 1 Q5T7C4;P09429;B2RPK0;D6R9A6;P26583 Q5T7C4;D6R9A6 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 0 1 ; GK(1)MSSYAFFVQTCR;GK(1)MSSYAFFVQTCR 306.07 1.38E-79 212020000 111028 136964 155897 53019 207148 158749 163956 173047 144760 163920 FALSE TRUE FALSE 103245.5105 126110.4738 216264.4935 123430.9114 181165.5663 139164.1624 122932.4747 133647.9757 157307.9134 122873.3651 0.840259486 1.026345081 1.760059988 1.004537569 1.474408764 1.132582007 1.000481061 1.087688741 1.280244203 1 16.90681269 -6.505153087 24.54858474 1.094713813 1.235738298 0.054502477 0.252567023 1869.15229 2588630.535 0.091092256 0.078609201 3.12E-07 6.505153087 0.141024486 GK(ac)QGGK(ac)AR ddPTM_HeLa_A485_30min_R1 2 GKQGGKAR 8 2 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;A0A3B3IS11;Q93077;Q7L7L0;P04908;Q96QV6;Q8IUE6 A0A0U1RR32;Q93077;Q96QV6 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2A type 2-B 0 2 ; GK(1)QGGK(1)AR;GK(1)QGGK(1)AR 189.53 1.11E-09 4192500000 1990300 3182200 3118800 2168100 3535400 4115300 6071700 8953300 7075400 8264800 FALSE TRUE FALSE 2433035.369 3554330.609 4272573.904 2286537.813 3183403.162 4330770.745 4774431.694 6757489.137 8495367.881 6204537.462 0.392138074 0.572859884 0.688620857 0.368526716 0.513076628 0.69800058 0.769506466 1.089120531 1.369218565 1 22.56489223 -7.052623431 1.567660216 1.202288489 0.522239367 0.827687588 0.126503841 0.156146623 0.733340897 0.087553257 0.040435859 8.86E-08 7.052623431 -0.680049122 GK(ac)QGGK(ac)AR ddPTM_HeLa_A486_30min_R1 2 GKQGGKAR 8 2 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;A0A3B3IS11;Q93077;Q7L7L0;P04908;Q96QV6;Q8IUE6 A0A0U1RR32;Q93077;Q96QV6 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-A;Histone H2A type 2-B 0 2 ; GK(1)QGGK(1)AR;GK(1)QGGK(1)AR 178.87 5.75E-07 8021500000 6056100 5419800 6877900 2318170 7326100 6562800 7034600 6185800 6682200 7551500 FALSE TRUE FALSE 5631598.664 4990315.309 9541207.077 5396816.914 6407192.225 5753148.462 5274468.676 4777428.375 7261418.476 5660555.248 0.994884498 0.881594665 1.685560278 0.953407692 1.131901721 1.01635762 0.931793516 0.843985822 1.282810282 1 22.43251214 -5.971242145 1.906367279 1.002193442 1.153956513 0.055191721 0.230159423 0.991054546 7.2976162 0.086001479 0.096509703 1.07E-06 5.971242145 0.151763071 GK(ac)QGGK(ac)VR ddPTM_HeLa_A485_30min_R1 2 GKQGGKVR 8 2 Q9BTM1;Q9BTM1-2 Q9BTM1 H2AFJ Histone H2A.J 0 2 ; GK(1)QGGK(1)VR;GK(1)QGGK(1)VR 126.52 0.00283 50453000 8377.6 12899.4 13952.5 8311 17010.8 19872.5 24415.7 34748 30189 34272 FALSE TRUE FALSE 10241.16822 14407.87262 19114.11036 8765.008885 15317.14502 20912.99337 19199.08624 26225.99852 36247.65539 25728.62113 0.398045747 0.559993967 0.742912349 0.340671536 0.595334859 0.812829932 0.746215125 1.019331677 1.408845628 1 14.65108652 -7.015961176 1.170902847 1.201610514 0.536216278 0.737180307 0.155753358 0.253018261 0.64844424 0.120699586 0.055277411 9.64E-08 7.015961176 -0.665394237 GK(ac)QGGK(ac)VR ddPTM_HeLa_A486_30min_R1 2 GKQGGKVR 8 2 Q9BTM1;Q9BTM1-2 Q9BTM1 H2AFJ Histone H2A.J 0 2 ; GK(1)QGGK(1)VR;GK(1)QGGK(1)VR 121.85 0.0037512 48191000 30092 35926 34934 11151 45424 29473 38844 33976 34717 37050 FALSE TRUE FALSE 27982.7062 33079.09292 48461.38036 25960.09154 39726.49836 25836.92092 29124.82035 26240.40649 37726.29751 27772.43884 1.00757108 1.191076272 1.744945074 0.934742955 1.430428872 0.93030796 1.048695093 0.944836233 1.358407799 1 14.76136625 -6.268305794 24.97998935 1.052517041 1.26650317 0.15778313 0.236949411 1028.967082 3743367.217 0.081131582 0.073115714 5.39E-07 6.268305794 0.21398613 GK(ac)TGGK(ac)AR ddPTM_HeLa_A485_30min_R1 2 GKTGGKAR 8 2 P16104 P16104 H2AFX Histone H2AX 0 2 ; GK(1)TGGK(1)AR;GK(1)TGGK(1)AR 131.5 0.0014332 95331000 41894 60717 69300 47067 76752 90308 124536 183820 153437 176517 FALSE TRUE FALSE 51213.17577 67817.32498 94936.95381 49638.15103 69110.30139 95036.38724 97927.86623 138737.8568 184230.3985 132514.5605 0.386472065 0.511772629 0.716426584 0.374586392 0.521529869 0.717176942 0.738997027 1.046963113 1.390265325 1 17.01579136 -7.089878946 1.459995442 1.205809928 0.518526197 0.803986286 0.136033562 0.177777152 0.710120828 0.099309594 0.043709595 8.13E-08 7.089878946 -0.687283731 GK(ac)TGGK(ac)AR ddPTM_HeLa_A486_30min_R1 2 GKTGGKAR 8 2 P16104 P16104 H2AFX Histone H2AX 0 2 ; GK(1)TGGK(1)AR;GK(1)TGGK(1)AR 128.57 0.0016603 100688000 104311 123497 130870 44020 150221 119489 129726 131398 127372 137675 FALSE TRUE FALSE 96999.33756 113710.648 181546.3688 102480.7846 131378.8814 104747.6621 97267.1827 101481.5438 138412.7075 103200.2839 0.939913476 1.101844333 1.759165401 0.993028127 1.273047675 1.014993933 0.942508868 0.983345588 1.341204717 1 16.65508741 -6.264316518 24.7806002 1.048250858 1.225279717 0.100431393 0.2329328 536.770217 4623141.781 0.081656479 0.07518432 5.44E-07 6.264316518 0.177028859 GK(ac)VGRPTASK ddPTM_HeLa_A485_30min_R1 2 GKVGRPTASK 10 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; GK(1)VGRPTASK;GK(1)VGRPTASK 106.67 0.024465 137465000 188788 239020 220200 171583 258030 277520 347500 411310 292670 388520 FALSE TRUE FALSE 230783.2393 266971.3098 301661.1433 180956.1448 232339.6272 292050.5181 273253.7862 310435.5776 351406.1845 291669.1142 0.791250181 0.915322524 1.034258098 0.620415862 0.796586323 1.00130766 0.936862262 1.06434162 1.204811094 1 18.1539731 -6.889576153 1.432301225 1.101765588 0.843357258 0.456618964 0.11588745 0.408379848 1.660250153 0.07898202 0.041390631 1.29E-07 6.889576153 -0.25840833 GK(ac)VGRPTASK ddPTM_HeLa_A486_30min_R1 1 GKVGRPTASK 10 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 GK(1)VGRPTASK 108.56 0.022603 75980000 163020 170640 134230 57864 201520 172330 191150 188270 148250 215580 FALSE TRUE FALSE 151593.1398 157117.8649 186207.4508 134710.3163 176243.4825 151069.6767 143322.2482 145405.0309 161100.4294 161597.3648 0.938091658 0.972279871 1.15229262 0.833617036 1.090633394 0.934852353 0.886909563 0.89979828 0.996924854 1 17.30204415 -6.453080662 24.99991407 0.933745024 0.997221002 0.081749373 0.086824555 371.3780052 133017.458 0.029493042 0.026010406 3.52E-07 6.453080662 0.063475978 GK(ac)WFCPR ddPTM_HeLa_A485_30min_R1 1 GKWFCPR 7 1 Q8WYH8;Q9UNL4-7;Q9UNL4-5;Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-4 Q8WYH8;Q9UNL4-3;Q9UNL4-4 ING5;ING4 Inhibitor of growth protein 5;Inhibitor of growth protein 4 0 1 GK(1)WFCPR 124.37 0.019738 103620000 66958 87612 104850 70795 110410 83186 100840 99567 86940 86515 FALSE TRUE FALSE 81852.5761 97857.46128 143638.3782 74662.35159 99417.19273 87541.49033 79294.71021 75148.03714 104388.0605 64948.40269 1.26027081 1.506695426 2.211576763 1.149564092 1.530710358 1.347862098 1.220887765 1.157042114 1.607246002 1 15.98700642 GK(ac)WFCPR ddPTM_HeLa_A486_30min_R1 1 GKWFCPR 7 1 Q8WYH8;Q9UNL4-7;Q9UNL4-5;Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-4 Q8WYH8;Q9UNL4-3;Q9UNL4-4 ING5;ING4 Inhibitor of growth protein 5;Inhibitor of growth protein 4 0 1 GK(1)WFCPR 131.04 0.014328 99908000 94113 106730 105270 31605 129210 106350 108100 112270 104490 107740 FALSE TRUE FALSE 87516.1647 98272.3261 146033.3632 73578.03723 113003.277 93229.61829 81052.23663 86708.57184 113547.2773 80761.20273 1.083641176 1.216825936 1.808211843 0.911056729 1.399227267 1.154386204 1.003603635 1.073641413 1.405963179 1 16.30137478 -6.445480071 8.024106805 1.120220884 1.287913049 0.095804019 0.241617097 0.798856463 75.54369789 0.084842917 0.07458261 3.59E-07 6.445480071 0.167692165 GKADDMSDDQGTSVQSKS(ph)PDLEASLDTLENNCHVGSDIDFRPK ddPTM_HeLa_A486_30min_R1 1 GKADDMSDDQGTSVQSKSPDLEASLDTLENNCHVGSDIDFRPK 43 3 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 GKADDMSDDQGT(0.004)S(0.004)VQS(0.136)KS(0.852)PDLEAS(0.005)LDTLENNCHVGSDIDFRPK 171.61 1.75E-16 255220000 112480 85894 37626 38991 91893 121830 195590 183810 69780 174860 TRUE FALSE FALSE 104595.7328 79087.44662 52195.79486 90773.0185 80366.92307 106799.8533 146651.3133 141960.4755 75828.58658 131073.9179 0.797990436 0.603380504 0.398216485 0.692533038 0.613141992 0.814806294 1.118844356 1.083056628 0.578517739 1 17.00002111 -6.416384736 3.528348302 0.953955108 0.611652971 0.456803944 0.166220752 0.222056194 5.09731951 0.063306511 0.054126991 3.83E-07 6.416384736 -0.342302138 GKAS(ph)PFEEDQNR ddPTM_HeLa_A485_30min_R1 7 GKASPFEEDQNR 12 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR ;;;;;; 181.51 3.73E-13 11471090000 5115360 5064390 4683440 5842550 6447180 5437980 7244770 6245560 5081810 8087380 TRUE FALSE FALSE 6253254.184 5656626.356 6416039.35 6161713.712 5805276.122 5722704.224 5696865.705 4713826.617 6101682.654 6071345.003 1.029961925 0.931692459 1.056773968 1.014884463 0.956176287 0.942576022 0.938320208 0.776405659 1.004996858 1 22.53358473 -6.147347858 1.812150989 0.914598383 1.005613962 0.203926573 0.066723687 0.484666625 3.154059251 0.025958211 0.025734849 7.12E-07 6.147347858 0.091015579 GKAS(ph)PFEEDQNR ddPTM_HeLa_A486_30min_R1 8 GKASPFEEDQNR 12 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR ;;;;;;; 159.4 3.57E-09 14941760000 4005540 4323340 2975090 1649895 4477640 4298560 5104860 4847900 3545870 5125280 TRUE FALSE FALSE 3724772.331 3980742.793 4127124.524 3841038.941 3916012.639 3768247.372 3827570.034 3744138.999 3853228.867 3841876.528 0.969519011 1.036145426 1.074247049 0.999781985 1.019296849 0.980835106 0.99627617 0.97455995 1.002954894 1 21.87337972 -5.988443643 1.982610184 0.989816723 1.025985394 0.212185636 0.026435016 0.467087253 3.705361045 0.009871525 0.010923571 1.03E-06 5.988443643 0.03616867 GKAS(ph)PFEEDQNRDLK ddPTM_HeLa_A485_30min_R1 1 GKASPFEEDQNRDLK 15 2 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 GKAS(1)PFEEDQNRDLK 91.589 0.00049531 681050000 244080 317390 181870 263230 376730 440110 692750 1049900 241880 351310 TRUE FALSE FALSE 298374.7539 354505.9996 249151.2812 277609.5884 339221.4384 463153.4791 544738.3033 792410.3788 290423.0973 263734.8824 1.131343534 1.344175622 0.944703556 1.052608536 1.286221357 1.756132806 2.065476885 3.004571757 1.101193345 1 18.00872887 -6.278251249 2.719738172 1.954407379 1.126187232 0.243138484 0.533653373 0.325033973 4.792942788 0.195369883 0.179117098 5.27E-07 6.278251249 -0.828220147 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQSPR 41 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQS(1)PR 90.02 3.31E-05 456930000 129090 191940 174500 67718 215120 167530 207780 247790 175510 146840 TRUE FALSE FALSE 157805.6251 214385.7133 239054.8116 71417.26287 193701.8975 176301.6117 163386.1056 187019.114 210733.2471 110235.4904 1.431531938 1.944797566 2.16858301 0.64786089 1.757164565 1.59931807 1.482155203 1.69654177 1.91166426 1 16.75022925 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQS(ph)PR ddPTM_HeLa_A486_30min_R1 3 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQSPR 41 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQS(1)PR;GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQS(1)PR;GKEGTHATCASEEGGTESSESGSSLQPLSADS(0.001)T(0.003)PDVNQS(0.995)PR ;; 289.02 3.93E-81 1249180000 421107 395501 389495 14986 546120 308505 419076 431146 342434 278399 TRUE FALSE FALSE 391589.5739 364160.0604 540317.895 34888.16535 477620.5372 270444.7897 314218.7523 332983.4677 372116.4548 208686.0783 1.87645279 1.745013675 2.589142023 0.167180128 2.288703401 1.295940735 1.505700595 1.595618981 1.783139814 1 17.67097483 -1.000000002 0.043205598 5.69E-08 4.307399693 0.097185806 0.608083689 1754.590105 5.770333495 150.2375417 534.9081826 0.1 1.000000002 4.307399636 GKEKDS(ph)PFKPK ddPTM_HeLa_A486_30min_R1 1 GKEKDSPFKPK 11 3 Q15291 Q15291 RBBP5 Retinoblastoma-binding protein 5 1 0 GKEKDS(1)PFKPK 81.619 0.0059301 1036500000 2277500 1491900 295270 2107000 1102500 2524500 4036600 3449300 960440 5379800 TRUE FALSE FALSE 2117859.011 1373676.411 409606.4516 4905202.482 964214.1696 2213052.857 3026599.985 2663969.688 1043691.713 4032663.063 0.525176286 0.340637536 0.101572198 1.216368044 0.239101099 0.548781989 0.750521414 0.660598132 0.25880955 1 21.94330144 -14 0.212252729 3.21598118 0.460377157 0.174771818 0.304554175 268.1159867 2.676010184 254.8816836 0.629718791 1.00E-14 14 -2.755604023 GKEKEPGEQASVPLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 GKEKEPGEQASVPLSPK 17 2 P42858 P42858 HTT Huntingtin 1 0 GKEKEPGEQASVPLS(1)PK 73.294 0.0028999 200280000 195190 199160 85176 275020 240910 276730 515920 616560 161400 417760 TRUE FALSE FALSE 238609.3421 222450.0295 116686.1469 290043.6462 216924.1545 291219.1549 405689.4773 465347.6933 193791.4996 313620.1203 0.760822813 0.709297699 0.372062056 0.92482474 0.691678054 0.928572933 1.293569676 1.483794129 0.617917943 1 18.25865859 -6.451163019 3.266478345 1.138475062 0.687720695 0.375592153 0.244812623 0.250629271 5.212745944 0.093672608 0.078297272 3.54E-07 6.451163019 -0.450754367 GKELSDQAT(ph)ASPIVAR ddPTM_HeLa_A485_30min_R1 1 GKELSDQATASPIVAR 16 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 GKELSDQAT(0.935)AS(0.065)PIVAR 116.43 0.00013425 771690000 637590 918620 822610 694040 1280200 1063900 1295900 1628100 920020 1120200 TRUE FALSE FALSE 779419.6958 1026044.618 1126927.671 731953.6478 1152738.793 1119604.159 1019020.378 1228805.922 1104659.575 840954.7558 0.926827146 1.220094911 1.340057432 0.870384099 1.370750073 1.331348864 1.211742215 1.461203369 1.313577892 1 19.68166866 GKELSDQATAS(ph)PIVAR ddPTM_HeLa_A485_30min_R1 2 GKELSDQATASPIVAR 16 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 GKELSDQAT(0.02)AS(0.98)PIVAR;GKELSDQAT(0.248)AS(0.752)PIVAR ; 146.13 3.54E-08 1841930000 2341740 3602800 3199700 2494300 4333800 4112100 4807700 5995100 3472700 3569800 TRUE FALSE FALSE 2862651.984 4024116.12 4383402.181 2630557.293 3902311.655 4327403.197 3780495.62 4524792.325 4169639.037 2679914.557 1.068187781 1.501583738 1.635649976 0.981582523 1.456132862 1.614754167 1.410677669 1.688409174 1.555885065 1 21.35375557 -5.979976981 24.98238271 1.498841909 1.320997598 0.070681085 0.248992846 569.5732085 710643.565 0.07520158 0.085261217 1.05E-06 5.979976981 -0.17784431 GKELSDQATAS(ph)PIVAR ddPTM_HeLa_A486_30min_R1 3 GKELSDQATASPIVAR 16 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 GKELSDQAT(0.379)AS(0.621)PIVAR;GKELSDQAT(0.007)AS(0.993)PIVAR;GKELSDQAT(0.249)AS(0.751)PIVAR ;; 224.1 3.25E-34 2733060000 4076910 3829630 2815270 1316110 4793600 3640240 4502840 4891300 2830430 4640500 TRUE FALSE FALSE 3791139.662 3526156.172 3905417.94 3063970.593 4192341.989 3191144.2 3376181.806 3777657.766 3075773.951 3478488.595 1.089881297 1.013703531 1.122734151 0.880833876 1.205219415 0.917393895 0.970588724 1.086005506 0.88422712 1 21.73002916 GKEVPFFSVLLFAR ddPTM_HeLa_A485_30min_R1 2 GKEVPFFSVLLFAR 14 1 Q96BN8 Q96BN8 OTULIN Ubiquitin thioesterase otulin 0 0 ; ; 117 0.00028067 20735900 17603.4 15482.6 11467.8 14449.6 10312.1 21901.1 27312.5 31303.5 10542.3 31309.3 FALSE FALSE TRUE 21519.2156 17293.15539 15710.21643 15238.94506 9285.391116 23047.80773 21476.96125 23626.26754 12658.04291 23504.46771 0.915537244 0.735739077 0.668392776 0.648342487 0.395047921 0.980571354 0.913739529 1.005181986 0.538537739 1 14.52064739 -6.308702619 24.9999589 0.889563348 0.6745356 0.279142476 0.172717936 572.2604738 302696.3016 0.061244095 0.054012323 4.91E-07 6.308702619 -0.215027749 GKEVPFFSVLLFAR ddPTM_HeLa_A486_30min_R1 1 GKEVPFFSVLLFAR 14 1 Q96BN8 Q96BN8 OTULIN Ubiquitin thioesterase otulin 0 0 118.21 0.00019336 6714800 7320.7 5768.4 4339.4 3760.1 8007 6066.3 8740.8 8274.6 4735.3 7819.2 FALSE FALSE TRUE 6807.556734 5311.290976 6019.731893 8753.702825 7002.687398 5317.901584 6553.759389 6390.654213 5145.759617 5861.221426 1.161457014 0.90617477 1.027043931 1.493494647 1.194748823 0.907302625 1.118155912 1.090328065 0.877932984 1 12.51698563 -6.244336165 24.5888791 1.011852664 1.154192833 0.203053065 0.155231293 1363.812539 1960720.955 0.055768481 0.05561774 5.70E-07 6.244336165 0.142340169 GKFS(ph)LFK ddPTM_HeLa_A486_30min_R1 1 GKFSLFK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKFS(1)LFK 86.624 0.0036807 97950000 105970 121040 64952 94666 81506 167950 213050 321780 96259 165940 TRUE FALSE FALSE 98542.05023 111448.3496 90103.15387 220387.2322 71282.75747 147230.0366 159742.6366 248517.7184 104602.8076 124387.5439 0.792217992 0.895976768 0.724374411 1.771778952 0.573069901 1.183639712 1.284233385 1.997930907 0.840942785 1 16.9244825 -6.584034455 4.00685474 1.359839063 0.973081046 0.111388617 0.414161092 0.420757666 13.77133666 0.160007534 0.123282412 2.61E-07 6.584034455 -0.386758017 GKGEKEPPS(ph)PGMER ddPTM_HeLa_A486_30min_R1 1 GKGEKEPPSPGMER 14 2 P56182 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A 1 0 GKGEKEPPS(1)PGMER 79.511 0.0023353 971080000 279000 258200 182320 178270 336230 323390 425920 442580 203220 401120 TRUE FALSE FALSE 259443.5408 237739.2917 252919.1867 415021.5693 294056.8982 283493.4298 319350.3111 341814.1955 220835.2732 300676.9411 0.862864774 0.790680159 0.84116589 1.380290646 0.977982871 0.942850585 1.06210443 1.136815461 0.734460289 1 18.19785471 -5.042625949 24.99970106 1.040181661 0.824059405 0.265362777 0.153796945 573.1720617 336159.169 0.041050931 0.071109915 9.07E-06 5.042625949 -0.216122257 GKGFSVVADT(ph)PELQR ddPTM_HeLa_A485_30min_R1 4 GKGFSVVADTPELQR 15 1 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 GKGFSVVADT(1)PELQR;GKGFSVVADT(1)PELQR;GKGFSVVADT(1)PELQR;GKGFSVVADT(1)PELQR ;;; 207.43 1.74E-25 5611950000 3038950 4523990 3440420 1962460 4995310 5076600 5335150 7227460 3376170 3187140 TRUE FALSE FALSE 3714953.943 5053031.277 4713174.526 2069664.221 4497959.397 5342402.926 4195251.618 5454914.103 4053736.351 2392644.653 1.552655944 2.111902104 1.969859803 0.865011116 1.879911165 2.232844279 1.753395187 2.279868051 1.694249226 1 21.19017472 -5.94630148 24.99995159 1.890409781 1.645311631 0.017073672 0.45381856 297.9749847 138723.7873 0.139178172 0.157813194 1.13E-06 5.94630148 -0.24509815 GKGFSVVADT(ph)PELQR ddPTM_HeLa_A486_30min_R1 2 GKGFSVVADTPELQR 15 1 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 GKGFSVVADT(1)PELQR;GKGFSVVADT(1)PELQR ; 172.83 2.76E-12 2257360000 2537400 2039230 1772410 799120 2818000 1846310 2467800 2580900 1399060 2443000 TRUE FALSE FALSE 2359541.363 1877633.988 2458734.619 1860391.745 2464540.163 1618531.044 1850330.338 1993285.411 1520331.647 1831256.899 1.288481897 1.025325278 1.342648659 1.015909754 1.34581891 0.883836148 1.010415491 1.0884794 0.830212106 1 20.80440276 -6.272465974 24.99219979 0.971107769 1.191024291 0.476691598 0.125775389 678.0086566 1536728.765 0.041036351 0.036511551 5.34E-07 6.272465974 0.219916522 GKGGEIQPVSVK ddPTM_HeLa_A485_30min_R1 1 GKGGEIQPVSVK 12 1 P61604;B8ZZL8 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 97.69 0.014793 0 58205 64176 48025 56746 63399 92020 98687 117470 53053 92675 FALSE FALSE TRUE 71152.50145 71680.82494 65791.44599 59845.89029 57086.77295 96838.02491 77601.71625 88660.29831 63700.25047 69572.82806 1.022705321 1.03029914 0.945648579 0.860190565 0.820532592 1.39189433 1.115402642 1.27435237 0.915590932 1 16.08623635 -6.239912701 24.99817157 1.155092279 0.937459276 0.351477204 0.137434899 874.9351717 1016032.101 0.044832484 0.044793691 5.76E-07 6.239912701 -0.217633003 GKGGEIQPVSVK ddPTM_HeLa_A486_30min_R1 1 GKGGEIQPVSVK 12 1 P61604;B8ZZL8 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 63.185 0.029737 272370000 495860 617000 339810 501590 946240 583060 622920 618800 444810 621220 FALSE FALSE TRUE 461102.7746 568106.6729 471393.5324 1167726.869 827553.7559 511127.9853 467058.8274 477912.7483 483366.4889 465662.4685 0.990208157 1.219996696 1.012307335 2.507667995 1.777153651 1.097636206 1.00299865 1.026307209 1.038018998 1 18.82892508 -6.397271893 6.317411023 1.023712856 1.513158204 0.24836707 0.408786038 0.391823834 18.53313476 0.159885483 0.140354487 4.01E-07 6.397271893 0.489445348 GKGGEIQPVSVK(ac)VGDK ddPTM_HeLa_A485_30min_R1 1 GKGGEIQPVSVKVGDK 16 2 P61604;B8ZZL8 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 1 GKGGEIQPVSVK(1)VGDK 95.094 0.0024247 0 16161 17634 22060 12864 26753 20979 19612 18822 19345 20872 FALSE TRUE FALSE 19755.9587 19696.1429 30220.91199 13566.72775 24089.37738 22077.428 15421.73598 14205.87499 23227.36406 15668.99452 1.260831298 1.257013836 1.928707803 0.865832695 1.537391398 1.408988175 0.984219885 0.906623266 1.482377445 1 13.93562498 -6.752696476 24.96927358 1.085523752 1.380238282 0.188410066 0.287658299 307.0550533 876935.0936 0.108054233 0.082383553 1.77E-07 6.752696476 0.29471453 GKGGVT(ph)GSPEASISGSK ddPTM_HeLa_A485_30min_R1 1 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.702)GS(0.291)PEAS(0.007)ISGSK 233.79 1.02E-35 794350000 645320 557930 403180 713260 741790 683170 843180 891170 598460 1056200 TRUE FALSE FALSE 788869.2077 623175.0602 552333.0597 752223.5877 667934.783 718939.7248 663027.7049 672609.1602 718565.4326 792908.7779 0.994905378 0.785935378 0.696590926 0.948688687 0.842385406 0.906711774 0.836196702 0.848280633 0.906239725 1 19.59679537 -8.983798866 0.527522879 1.013474999 0.848016874 0.220960781 0.079158915 6.304783215 2.180048595 0.25254702 0.038114227 1.04E-09 8.983798866 -0.165458125 GKGGVTGS(ph)PEASISGS(ph)KGDLK ddPTM_HeLa_A486_30min_R1 1 GKGGVTGSPEASISGSKGDLK 21 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GKGGVT(0.049)GS(0.951)PEAS(0.044)IS(0.281)GS(0.674)KGDLK 89.684 0.00074463 726500000 940880 715470 190810 678360 577390 926880 1319600 1176400 503340 2025200 TRUE FALSE FALSE 874929.1707 658773.5515 264696.7421 1579256.362 504968.3623 812530.9694 989422.1227 908559.4006 546969.9165 1518076.738 0.576340542 0.433952734 0.174363216 1.040300745 0.332636915 0.535237086 0.651760282 0.598493724 0.360304524 1 20.53381329 -11.15318667 2.412189701 2.110542479 0.525791588 0.297066839 0.220260933 19533458.32 4635108.236 118692323.7 0.053753598 7.03E-12 11.15318667 -1.584750891 GKGGVTGS(ph)PEASISGSK ddPTM_HeLa_A485_30min_R1 4 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.015)GS(0.985)PEASISGSK;GKGGVT(0.017)GS(0.982)PEAS(0.001)ISGSK;GKGGVT(0.158)GS(0.833)PEAS(0.009)ISGSK;GKGGVTGS(0.997)PEAS(0.003)ISGSK ;;; 295.52 2.79E-67 30569800000 16093170 13550860 10280110 19074920 16594910 15776720 21881790 19925700 14413800 25908800 TRUE FALSE FALSE 19673040.15 15135515.2 14083150.48 20116934.58 14942662.49 16602764.66 17206566.81 15038890.83 17306517.45 19450212.98 1.011456284 0.778167068 0.724061505 1.03427837 0.76825187 0.853603232 0.884646704 0.773199288 0.889785498 1 24.21328262 -8.019176812 22.87873234 1.000000009 0.849655824 0.169309296 0.097396919 742.9554663 886378.6296 0.089755374 0.023174738 9.57E-09 8.019176812 -0.150344185 GKGGVTGS(ph)PEASISGSK ddPTM_HeLa_A486_30min_R1 6 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.103)GS(0.86)PEAS(0.034)IS(0.003)GSK;GKGGVT(0.141)GS(0.855)PEAS(0.004)ISGSK;GKGGVT(0.005)GS(0.995)PEASISGSK;GKGGVTGS(0.916)PEAS(0.084)ISGSK;GKGGVTGS(0.989)PEAS(0.01)ISGSK;GKGGVT(0.095)GS(0.904)PEAS(0.002)ISGSK ;;;;; 314.55 5.12E-78 7717420000 8528560 7288890 4275950 3081570 7154360 7503260 9096430 8599950 5664180 9633970 TRUE FALSE FALSE 7930751.986 6711291.811 5931712.354 7174050.694 6256993.457 6577584.069 6820407.002 6641929.121 6155155.683 7221561.205 1.098204635 0.929340847 0.821389196 0.993421019 0.866432241 0.910825773 0.944450488 0.919735904 0.852330335 1 22.78387933 -4.27190512 4.813927179 0.910750669 1.107154665 0.506330182 0.054259313 0.124332842 8.296917321 0.012666848 0.080501746 5.35E-05 4.27190512 0.196403997 GKGGVTGS(ph)PEASISGSKGDLK ddPTM_HeLa_A485_30min_R1 4 GKGGVTGSPEASISGSKGDLK 21 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.008)GS(0.992)PEASISGSKGDLK;GKGGVT(0.001)GS(0.999)PEASISGSKGDLK;GKGGVT(0.003)GS(0.995)PEAS(0.003)ISGSKGDLK;GKGGVT(0.002)GS(0.908)PEAS(0.09)ISGSKGDLK ;;; 221.29 1.03E-35 2742560000 1917620 2759950 1042660 1304980 2466340 3981020 5022800 8349900 1681520 1985240 TRUE FALSE FALSE 2344187.953 3082702.144 1428383.323 1376267.753 2220782.53 4189460.051 3949637.747 6302073.933 2018985.64 1490356.204 1.572904483 2.068433128 0.958417403 0.923448871 1.490101846 2.811046139 2.650130041 4.228568927 1.354700061 1 20.50722575 -6.230201466 7.24317415 2.625944513 1.384838454 0.22803953 0.881488175 0.273408266 51.8096934 0.285778157 0.281595184 5.89E-07 6.230201466 -1.241106059 GKGGVTGS(ph)PEASISGSKGDLK ddPTM_HeLa_A486_30min_R1 2 GKGGVTGSPEASISGSKGDLK 21 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.192)GS(0.806)PEAS(0.001)ISGSKGDLK;GKGGVT(0.013)GS(0.983)PEAS(0.004)ISGSKGDLK ; 213.09 2.14E-27 1355300000 1094240 573650 340080 444110 824400 613320 1082270 1055110 406000 1372010 TRUE FALSE FALSE 1017539.427 528191.8848 471768.0837 1033910.524 720996.0648 537654.8142 811474.5989 814884.4859 441192.4069 1028449.766 0.989391471 0.513580636 0.458717673 1.005309699 0.701051319 0.522781795 0.789026967 0.792342527 0.428987804 1 19.9720399 -10.23584628 3.675541241 1.000442449 0.687834715 0.18236811 0.197526345 151737347.6 237030687.5 824446.2357 0.047224556 5.81E-11 10.23584628 -0.312607734 GKGGVTGSPEASISGS(ph)KGDLK ddPTM_HeLa_A486_30min_R1 1 GKGGVTGSPEASISGSKGDLK 21 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVTGSPEASIS(0.014)GS(0.986)KGDLK 117.96 1.55E-05 1984800000 941100 818510 290960 605770 715310 1013200 1515500 1319100 571610 2185700 TRUE FALSE FALSE 875133.7498 753648.2866 403627.5042 1410263.174 625589.1498 888201.6855 1136305.871 1018769.726 621157.615 1638386.493 0.534143655 0.459994201 0.246356709 0.860763428 0.381832463 0.542119756 0.693551781 0.62181282 0.379127646 1 20.6438443 -14 0.26497455 4.098616278 0.493523492 0.415035461 0.167234301 200.2953955 1.960484045 339.1048477 0.211657788 1.00E-14 14 -3.605092786 GKGS(ph)PRPQAPK ddPTM_HeLa_A485_30min_R1 5 GKGSPRPQAPK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK ;;;; 89.231 0.0012973 73512320000 8460710 7930850 6622370 9730280 10178190 9833390 13716270 14126100 8680470 13375530 TRUE FALSE FALSE 10342765.75 8858293.918 9072260.243 10261820.56 9164813.666 10348251.1 10785676.86 10661651.83 10422560.71 10041256.53 1.030027041 0.882189783 0.903498503 1.02196578 0.912715818 1.030573322 1.074136173 1.061784628 1.037973751 1 23.25943648 -6.380362778 5.316343078 1.048956553 0.947999054 0.469948605 0.048117725 0.193056263 7.657991405 0.016992196 0.014888695 4.17E-07 6.380362778 -0.100957499 GKGS(ph)PRPQAPK ddPTM_HeLa_A486_30min_R1 8 GKGSPRPQAPK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK;GKGS(1)PRPQAPK ;;;;;;; 77.527 0.0043277 78712530000 60671450 57836070 34302050 24356530 57439750 60871800 72349850 69781290 44023290 75941120 TRUE FALSE FALSE 56418694.66 53252929.18 47584722.4 56703232.75 50235120.95 53362056.22 54247152.29 53893613.58 47839264.22 56924969.26 0.991106282 0.935493332 0.835920037 0.996104758 0.882479545 0.937410365 0.952958833 0.946748225 0.840391569 1 25.76255827 GKGSPRPQAPK ddPTM_HeLa_A486_30min_R1 1 GKGSPRPQAPK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 0 92.112 0.002044 368290000 393900 420910 220670 194660 432370 497330 525240 545500 373410 553490 FALSE FALSE TRUE 366289.6441 387555.5587 306119.3337 453178.3176 378138.1229 435974.4811 393819.3966 421301.5582 405777.4795 414892.5014 0.882854337 0.934110781 0.73782807 1.092278882 0.911412285 1.050813113 0.949208277 1.015447512 0.978030401 1 18.66237806 -5.268217236 24.99932164 0.996602189 0.859849034 0.513996948 0.065757998 423.446629 1561832.304 0.01729365 0.026313266 5.39E-06 5.268217236 -0.136753155 GKHQPWQS(ph)PERPLSR ddPTM_HeLa_A485_30min_R1 2 GKHQPWQSPERPLSR 15 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 GKHQPWQS(1)PERPLSR;GKHQPWQS(1)PERPLSR ; 218.14 7.70E-34 4259000000 1006100 1460610 1210980 996110 1183070 1324440 1436180 1597330 999920 1216590 TRUE FALSE FALSE 1229903.474 1631415.634 1658971.895 1050524.967 1065279.397 1393785.63 1129328.41 1205582.313 1200594.772 913316.5027 1.346634458 1.786254414 1.816426058 1.150231014 1.166385797 1.526070783 1.236513747 1.320004959 1.314544048 1 19.80075538 -1 0.083100716 0.712180523 3.20689344 0.360189214 0.203519557 203.8926382 1.232792266 5.340907518 58.23425054 0.1 1 2.494712917 GKHQPWQS(ph)PERPLSR ddPTM_HeLa_A486_30min_R1 2 GKHQPWQSPERPLSR 15 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 GKHQPWQS(1)PERPLSR;GKHQPWQS(1)PERPLSR ; 189.55 2.00E-18 2656900000 1399520 1097170 943190 437690 1162520 929120 1257570 1202720 795480 1369900 TRUE FALSE FALSE 1301420.875 1010226.253 1308418.428 1018964.44 1016705.902 814494.621 942912.6848 928886.9112 864432.8469 1026868.123 1.267369047 0.983793566 1.274183508 0.992303117 0.990103674 0.793183275 0.918241265 0.904582478 0.841814861 1 19.96981948 -5.621948887 2.122816355 0.891213919 1.155688427 0.601158195 0.095891868 0.205330022 1.883912553 0.02927191 0.041772313 2.39E-06 5.621948887 0.264474508 GKHS(ph)LDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_A485_30min_R1 1 GKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 44 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GKHS(0.584)LDS(0.416)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 245.44 3.84E-53 491870000 338060 292540 190290 476180 426760 419050 722020 805670 297630 746450 TRUE FALSE FALSE 413260.2807 326750.0082 260686.1896 502192.5076 384270.276 440990.81 567754.5286 608078.1693 357361.611 560373.7524 0.737472587 0.583092993 0.465200571 0.896174215 0.685739249 0.786958362 1.013171167 1.085129642 0.63772011 1 19.09602986 -6.019917183 1.033995584 0.934135518 0.615318721 0.39174128 0.151512165 0.521886947 1.195244313 0.076334736 0.088194778 9.55E-07 6.019917183 -0.318816797 GKHSLDS(ph)DEEEDDDDGGSSK ddPTM_HeLa_A485_30min_R1 1 GKHSLDSDEEEDDDDGGSSK 20 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GKHS(0.005)LDS(0.995)DEEEDDDDGGSSK 92.147 1.94E-05 0 173240 113130 77415 329080 175040 137020 235730 181960 112300 429050 TRUE FALSE FALSE 211776.6403 126359.5694 106054.03 347056.8071 157612.403 144194.1553 185364.3598 137334.0247 134837.5799 322095.7311 0.657495955 0.39230439 0.329262451 1.07749583 0.489334033 0.447674841 0.575494618 0.42637642 0.41862579 1 18.29713001 -9.870723462 4.185601751 1.00000835 0.534709871 0.322664717 0.20216085 156565990.6 343160118.2 20962.40608 0.049841285 1.35E-10 9.870723462 -0.465298479 GKHSLDS(ph)DEEEDDDDGGSSK ddPTM_HeLa_A486_30min_R1 1 GKHSLDSDEEEDDDDGGSSK 20 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GKHS(0.004)LDS(0.996)DEEEDDDDGGSSK 117.61 3.86E-07 0 117060 132910 48723 64081 94012 186110 181490 172110 103630 213300 TRUE FALSE FALSE 108854.6985 122377.7276 67589.85045 149183.8065 82220.13833 163149.6404 136079.2824 132924.3101 112612.7318 159888.2917 0.680817197 0.765395179 0.422731707 0.933050225 0.514234892 1.020397671 0.851089726 0.831357373 0.704321315 1 17.28670477 -6.262299538 24.99960034 0.86899658 0.670548043 0.336330143 0.152576243 100.6657495 2925711.916 0.050000094 0.046673329 5.47E-07 6.262299538 -0.198448537 GKIEVLDS(ph)PASK ddPTM_HeLa_A485_30min_R1 1 GKIEVLDSPASK 12 1 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 GKIEVLDS(1)PASK 156.49 2.22E-08 1185600000 956510 783410 592980 1230800 1364100 1128100 1650800 1795200 855060 1683500 TRUE FALSE FALSE 1169282.35 875022.9847 812347.978 1298035.487 1228285.414 1187165.572 1298093.094 1354924.385 1026662.699 1263834.433 0.925186337 0.692355709 0.642764556 1.027061341 0.971872092 0.939336309 1.027106922 1.072074277 0.812339554 1 20.26937605 -5.270417271 24.96439895 0.981656718 0.747327549 0.544738694 0.09422487 440.3146122 1224361.421 0.026137654 0.039412946 5.37E-06 5.270417271 -0.234329168 GKIEVLDS(ph)PASK ddPTM_HeLa_A486_30min_R1 2 GKIEVLDSPASK 12 1 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 GKIEVLDS(0.994)PAS(0.006)K;GKIEVLDS(0.925)PAS(0.075)K ; 134.34 9.09E-06 1788900000 2580200 2285870 1184710 1165250 2319310 2653600 3455000 3299600 1626080 3415700 TRUE FALSE FALSE 2399341.304 2104729.336 1643461.44 2712760.888 2028400.513 2326225.812 2590522.457 2548353.11 1767029.924 2560386.488 0.937101221 0.822035793 0.641880219 1.059512266 0.792224347 0.908544793 1.011770086 0.995300171 0.690141872 1 21.28793017 -5.267760651 24.97939306 0.920013326 0.80250875 0.16924525 0.123913541 920.7705576 3638553.526 0.034309958 0.052340518 5.40E-06 5.267760651 -0.117504575 GKIEVLDS(ph)PASKK ddPTM_HeLa_A485_30min_R1 1 GKIEVLDSPASKK 13 2 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 GKIEVLDS(1)PASKK 121.82 2.67E-05 300540000 944300 662610 430760 1363100 1106600 1075500 1800800 1998300 787540 1916100 TRUE FALSE FALSE 1154356.277 740096.4756 590116.0494 1437562.701 996423.0185 1131811.517 1416044.369 1508213.792 945592.0543 1438451.533 0.80249925 0.51450915 0.410243957 0.999382091 0.692705312 0.786826313 0.984422719 1.048498164 0.657368033 1 20.45608518 -5.265524221 24.99991687 0.875835851 0.569626621 0.444999177 0.156250425 318.5228965 1949416.056 0.043909603 0.067887258 5.43E-06 5.265524221 -0.306209231 GKLDVQFSGLTK ddPTM_HeLa_A485_30min_R1 1 GKLDVQFSGLTK 12 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 192.4 5.08E-14 0 345730 397580 294730 329070 395000 434830 485170 540410 319920 484390 FALSE FALSE TRUE 422636.4457 444073.5225 403762.8917 347046.2609 355672.4131 457597.0264 381509.466 407873.6002 384125.0095 363640.4875 1.162237045 1.221188338 1.11033536 0.954366394 0.978088044 1.258377552 1.049139134 1.12163968 1.056331797 1 18.47215331 -4.936359376 5.650575656 1.066561839 1.188808975 0.288023025 0.081810122 0.268323705 16.50894125 0.022396153 0.047642972 1.16E-05 4.936359376 0.122247136 GKLDVQFSGLTK ddPTM_HeLa_A486_30min_R1 2 GKLDVQFSGLTK 12 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 158.52 1.97E-05 0 795970 744370 447490 260540 733790 683100 825200 789390 581890 841360 FALSE FALSE TRUE 740176.6134 685383.4103 620770.1122 606550.287 641751.2159 598826.0673 618726.2319 609663.1293 632328.6937 630677.9797 1.173620512 1.08674067 0.984290133 0.961743245 1.017557671 0.949495759 0.981049366 0.966678953 1.002617364 1 19.26654404 -4.539883394 2.30637252 0.979996838 1.177730997 0.905520579 0.019963089 0.09284489 0.848703017 0.005209906 0.029109022 2.88E-05 4.539883394 0.19773416 GKLEAIIT(ph)PPPAK ddPTM_HeLa_A486_30min_R1 1 GKLEAIITPPPAK 13 1 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 1 0 GKLEAIIT(1)PPPAK 65.943 0.018977 1665100000 2748200 2693700 1636300 996860 2817400 2755800 3494100 3297400 2525200 3678300 TRUE FALSE FALSE 2555565.372 2480241.402 2269919.182 2320740.459 2464015.421 2415817.415 2619839.223 2546654.002 2744086.369 2757229.738 0.926859788 0.899541075 0.823260808 0.841692814 0.893656189 0.876175598 0.950170813 0.923627787 0.995233125 1 21.39478805 -7.254569098 0.957336061 0.999157642 0.871806122 0.678086252 0.03162429 0.34879746 0.572335345 0.02985893 0.012306801 5.56E-08 7.254569098 -0.12735152 GKLEAIIT(ph)PPPAKK ddPTM_HeLa_A485_30min_R1 1 GKLEAIITPPPAKK 14 2 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 1 0 GKLEAIIT(1)PPPAKK 88.551 0.0014755 2519700000 2731100 2334400 1461300 3026500 3095300 3656200 4752900 6298900 2573900 4738600 TRUE FALSE FALSE 3338623.773 2607387.773 2001895.68 3191830.031 2787121.064 3847632.978 3737404.087 4754084.899 3090458.121 3557354.227 0.938513164 0.732957026 0.562748479 0.8972483 0.783481454 1.081599619 1.050613419 1.336410319 0.868751865 1 21.76237321 -6.257409611 4.458421839 1.089948619 0.771728109 0.488955465 0.144297565 0.16333678 8.631358325 0.049887527 0.046884344 5.53E-07 6.257409611 -0.31822051 GKLEAIIT(ph)PPPAKK ddPTM_HeLa_A486_30min_R1 2 GKLEAIITPPPAKK 14 2 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 1 0 GKLEAIIT(1)PPPAKK;GKLEAIIT(1)PPPAKK ; 82.007 0.0037711 3990000000 2509200 2244300 1143640 913700 2258700 2452800 2986000 2862300 1759870 3288000 TRUE FALSE FALSE 2333318.038 2066453.494 1586488.036 2127139.776 1975392.784 2150198.474 2238871.217 2210616.774 1912416.949 2464663.399 0.946708601 0.838432337 0.643693592 0.863054881 0.801485828 0.8724106 0.908388228 0.896924414 0.775934332 1 21.2329592 -6.351579081 4.409882698 0.887069779 0.812501419 0.145542343 0.086935196 0.487827174 16.72941951 0.031899519 0.02803992 4.45E-07 6.351579081 -0.074568359 GKLEEQRPER ddPTM_HeLa_A485_30min_R1 4 GKLEEQRPER 10 2 J3KPG2;E9PJF7;Q5W0H4;A0A0B4J2C3;P13693-2;P13693 J3KPG2 TPT1 Translationally-controlled tumor protein 0 0 ;;; ;;; 143.24 4.94E-06 618210000 824770 1034800 908240 858660 1167150 1202040 1391570 1620840 939450 1175550 FALSE FALSE TRUE 1008237.241 1155810.858 1244235.771 905566.4216 1050944.448 1264976.956 1094249.701 1223326.449 1127988.998 882507.0194 1.142469373 1.309690272 1.409887676 1.026129426 1.190862424 1.433390248 1.239933142 1.386194582 1.278164335 1 19.75124823 -10.22442934 4.641047438 0.99993161 1.271948594 0.30971988 0.120165595 8.63E-05 1.44E-05 0.118038132 0.028621269 5.96E-11 10.22442934 0.272016984 GKLEEQRPER ddPTM_HeLa_A486_30min_R1 3 GKLEEQRPER 10 2 J3KPG2;E9PJF7;Q5W0H4;A0A0B4J2C3;P13693-2;P13693 J3KPG2 TPT1 Translationally-controlled tumor protein 0 0 ;; ;; 103.91 0.00089465 394390000 698430 750930 628040 305388 996380 771270 881950 857310 637590 902600 FALSE FALSE TRUE 649473.6637 691423.572 871233.9075 710958.6975 871404.7295 676118.5491 661276.7817 662119.2279 692856.8146 676583.0851 0.959931867 1.021934463 1.28769685 1.050807673 1.287949328 0.999313409 0.977377053 0.978622201 1.024052818 1 19.36790758 -6.472340846 24.99388034 0.992533201 1.123633161 0.287772604 0.098910794 469.3044088 232097.9201 0.035181309 0.031026607 3.37E-07 6.472340846 0.13109996 GKLPES(ph)PK ddPTM_HeLa_A485_30min_R1 4 GKLPESPK 8 1 E9PLT2;E9PKP7;P17480-2;P17480 E9PLT2 UBTF Nucleolar transcription factor 1 1 0 GKLPES(1)PK;GKLPES(1)PK;GKLPES(1)PK;GKLPES(1)PK ;;; 118.9 0.00040003 4376300000 4306620 3123930 2118780 8160490 4199520 4176150 6777700 5901210 3216870 10919400 TRUE FALSE FALSE 5264612.761 3489246.439 2902604.892 8606276.905 3781401.043 4394806.756 5329589.026 4453928.995 3862466.302 8197394.537 0.642230008 0.425653105 0.354088714 1.049879552 0.46129304 0.536122391 0.650156462 0.543334711 0.471182189 1 22.96673401 -10.99205265 3.062368439 1.405379169 0.571245544 0.33286932 0.18243502 73018510.45 89446835.16 209252580.1 0.045180772 1.02E-11 10.99205265 -0.834133625 GKLPES(ph)PK ddPTM_HeLa_A486_30min_R1 2 GKLPESPK 8 1 E9PLT2;E9PKP7;P17480-2;P17480 E9PLT2 UBTF Nucleolar transcription factor 1 1 0 GKLPES(1)PK;GKLPES(1)PK ; 130.01 0.00026861 2716500000 2333410 2058270 826510 1615430 1473360 2407600 3272000 2910400 1606320 4817700 TRUE FALSE FALSE 2169850.009 1895165.189 1146556.807 3760802.679 1288557.45 2110574.791 2453310.992 2247765.454 1745557.111 3611316.562 0.600847356 0.524785118 0.317489975 1.0413938 0.356810993 0.584433614 0.679339778 0.622422713 0.483357546 1 21.78409346 -10.45033075 2.898193618 1.010681962 0.58115643 0.309295841 0.188720167 31700966.25 36454880.31 2754693.753 0.044696587 3.55E-11 10.45033075 -0.429525533 GKLPES(ph)PKR ddPTM_HeLa_A485_30min_R1 3 GKLPESPKR 9 2 E9PLT2;E9PKP7;P17480-2;P17480 E9PLT2 UBTF Nucleolar transcription factor 1 1 0 GKLPES(1)PKR;GKLPES(1)PKR;GKLPES(1)PKR ;; 113.38 0.00034807 1675080000 2191310 1685130 1146450 2936450 1895900 2409790 3254740 3221360 1717520 4047090 TRUE FALSE FALSE 2678759.35 1882191.295 1570569.563 3096860.828 1707137.539 2535962.878 2559338.21 2431316.409 2062210.51 3038224.944 0.881685655 0.619503601 0.516936564 1.019299389 0.561886487 0.834685688 0.842379434 0.800242396 0.678755045 1 21.53479726 -13.99999997 0.195789409 2.100494426 0.706891599 0.195112531 0.149014755 224.052036 2.206936754 96.45594037 0.368862787 1.00E-14 13.99999997 -1.393602827 GKLPES(ph)PKR ddPTM_HeLa_A486_30min_R1 3 GKLPESPKR 9 2 E9PLT2;E9PKP7;P17480-2;P17480 E9PLT2 UBTF Nucleolar transcription factor 1 1 0 GKLPES(1)PKR;GKLPES(1)PKR;GKLPES(1)PKR ;; 93.011 0.0021753 1102220000 1674270 1445020 625830 749850 1094600 1574200 2071730 1677370 1128980 2753820 TRUE FALSE FALSE 1556912.319 1330511.353 868168.1363 1745688.695 957305.0613 1379991.209 1553361.241 1295469.468 1226840.895 2064245.548 0.754228256 0.644550913 0.420574063 0.845678799 0.46375542 0.66852086 0.752507977 0.627575275 0.594328953 1 20.97718316 -10.79988667 2.465604808 1.115770208 0.639362492 0.435076958 0.122602111 17325729.77 11449646.8 11999603.15 0.029877983 1.59E-11 10.79988667 -0.476407717 GKLPES(ph)PKRAEEIWQQSVIGDYLAR ddPTM_HeLa_A486_30min_R1 1 GKLPESPKRAEEIWQQSVIGDYLAR 25 3 E9PLT2;E9PKP7;P17480-2;P17480 E9PLT2 UBTF Nucleolar transcription factor 1 1 0 GKLPES(1)PKRAEEIWQQSVIGDYLAR 200.15 1.42E-27 507270000 76543 87531 62616 177090 151290 143090 269280 285520 82897 375800 TRUE FALSE FALSE 71177.73097 80594.72478 86862.59211 412274.4696 132313.7975 125437.0106 201903.2958 220513.3289 90082.57871 281697.234 0.252674582 0.286104069 0.308354437 1.463537515 0.469702154 0.445290175 0.716738652 0.782802606 0.319785102 1 18.10378587 -5.044464226 24.99909459 0.722307497 0.276347271 0.321714163 0.305524739 522.6045766 293823.0263 0.082392203 0.142717436 9.03E-06 5.044464226 -0.445960226 GKLS(ph)AEENPDDSEVPSSSGINSTK ddPTM_HeLa_A485_30min_R1 2 GKLSAEENPDDSEVPSSSGINSTK 24 1 Q9Y5Q9;A0A494C1S7;Q9Y5Q9-2 Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 1 0 GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK ; 186.97 6.61E-21 3676900000 1938430 1698840 1168040 2766170 2218550 1835600 3308500 3386600 1642760 3681500 TRUE FALSE FALSE 2369627.066 1897504.56 1600146.602 2917278.863 1997663.372 1931709.178 2601611.947 2556031.04 1972446.864 2763769.803 0.857389448 0.686563895 0.57897246 1.05554336 0.72280382 0.698939968 0.941327293 0.924834998 0.713679866 1 21.39820603 -14 0.093239043 1.65572229 0.641230284 0.171258918 0.136933316 355.3468582 2.282868477 45.84470191 2.925725679 1.00E-14 14 -1.014492005 GKLS(ph)AEENPDDSEVPSSSGINSTK ddPTM_HeLa_A486_30min_R1 2 GKLSAEENPDDSEVPSSSGINSTK 24 1 Q9Y5Q9;A0A494C1S7;Q9Y5Q9-2 Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 1 0 GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK ; 213.41 1.13E-29 2535970000 3431960 3498620 1657150 1575130 3118010 3791040 4903170 4624330 2595280 5200030 TRUE FALSE FALSE 3191397.327 3221376.609 2298842.86 3666982.243 2726920.112 3323340.029 3676345.006 3571471.007 2820240.96 3897908.641 0.818746056 0.826437176 0.589763145 0.940756334 0.699585435 0.85259567 0.94315833 0.916253134 0.723526696 1 21.89426885 -6.509170392 22.34087178 0.890058711 0.776750077 0.221008621 0.107412631 256.5254978 418070.5971 0.037524502 0.031676224 3.10E-07 6.509170392 -0.113308634 GKPASGAGAGAGAGK(ac)R ddPTM_HeLa_A485_30min_R1 1 GKPASGAGAGAGAGKR 16 2 O43818 O43818 RRP9 U3 small nucleolar RNA-interacting protein 2 0 1 GKPASGAGAGAGAGK(1)R 105.89 0.0037699 6613900 6650.1 8016.3 7926.2 6249.5 8820.8 7706.1 8494.6 10760 9411.2 10947 FALSE TRUE FALSE 8129.391802 8953.736552 10858.43122 6590.89436 7942.57018 8109.57948 6679.659315 8121.093129 11299.94152 8218.114365 0.989204024 1.089512284 1.32128013 0.801995941 0.966471118 0.986793213 0.812797075 0.988194222 1.375004169 1 13.00459169 -5.264541228 24.9980278 0.981167627 1.128950151 0.133910344 0.16561558 556.8758162 4487909.797 0.047154372 0.073312154 5.44E-06 5.264541228 0.147782524 GKPPPLLPSVLGPAGGDREALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_HeLa_A485_30min_R1 1 GKPPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLR 40 2 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 GKPPPLLPSVLGPAGGDREALGLGPPAAQLT(1)PPPAPVGLR 160.15 5.61E-15 602710000 117770 246320 237100 127290 316070 323060 382360 545890 209640 171230 TRUE FALSE FALSE 143967.5302 275124.9813 324813.1566 134243.5304 284600.961 339974.9221 300665.6624 412009.6216 251712.8251 128545.5123 1.119973212 2.140292387 2.526833888 1.044326854 2.214009311 2.644782506 2.338982179 3.205165348 1.958161126 1 16.97191972 -5.983099192 24.88284704 2.380234189 1.776233752 0.102599315 0.670648634 430.9953623 634545.5094 0.20042766 0.227209322 1.04E-06 5.983099192 -0.604000437 GKPPPLLPSVLGPAGGDREALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_HeLa_A486_30min_R1 1 GKPPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLR 40 2 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 GKPPPLLPSVLGPAGGDREALGLGPPAAQLT(1)PPPAPVGLR 137.19 1.26E-07 304070000 84491 65258 81180 42549 138530 68345 126630 119390 69000 105630 TRUE FALSE FALSE 78568.61721 60086.71841 112615.0701 99056.22231 121154.2757 59913.28878 94945.83464 92207.50327 74980.97556 79179.56046 0.992284079 0.758866531 1.422274504 1.251032738 1.530120589 0.756676198 1.199120506 1.16453669 0.94697388 1 16.27284044 -7.761424485 24.99999827 0.973486884 1.138094226 0.068276203 0.23739871 1.170965375 1988065.627 0.191934165 0.061768293 1.73E-08 7.761424485 0.164607342 GKPPS(ph)PTPWS(ph)GSNMKSPPVER ddPTM_HeLa_A485_30min_R1 1 GKPPSPTPWSGSNMKSPPVER 21 2 Q9Y6R9;Q9Y6R9-2 Q9Y6R9 CCDC61 Coiled-coil domain-containing protein 61 2 0 GKPPS(0.996)PT(0.025)PWS(0.398)GS(0.337)NMKS(0.244)PPVER 47.745 0.028916 101930000 76888 62441 50233 134560 95352 98365 142310 132550 68455 164730 TRUE FALSE FALSE 93991.47034 69742.93179 68816.27707 141910.6721 85858.42008 103515.2393 111904.3059 100041.9047 82193.29059 123665.8426 0.760043908 0.563962775 0.55646956 1.147533297 0.694277565 0.83705603 0.904892601 0.808969579 0.664640202 1 16.91608755 -5.161844454 23.62183553 0.850896335 0.620536032 0.369577792 0.141803777 29.16809983 6911.822189 0.037166569 0.064374392 6.89E-06 5.161844454 -0.230360303 GKPPS(ph)PTPWSGSNMK ddPTM_HeLa_A486_30min_R1 2 GKPPSPTPWSGSNMK 15 1 Q9Y6R9;Q9Y6R9-2 Q9Y6R9 CCDC61 Coiled-coil domain-containing protein 61 1 0 GKPPS(0.97)PT(0.03)PWSGSNMK;GKPPS(0.948)PT(0.052)PWSGSNMK ; 110.77 0.00010978 480910000 557260 492030 233090 329430 425390 579860 704170 679290 377500 924270 TRUE FALSE FALSE 518198.9517 453039.7509 323348.6904 766929.6885 372033.6196 508322.7688 527979.218 524630.4958 410222.0039 692826.776 0.747948794 0.653900465 0.466709287 1.106957345 0.536979275 0.733693885 0.762065261 0.757231842 0.592098946 1 19.40213516 -10.19711235 3.827503884 1.000235395 0.708538019 0.222716744 0.164504437 52122532.79 116676611.8 164426.1569 0.039176683 6.35E-11 10.19711235 -0.291697375 GKPSEQLT(ph)PTR ddPTM_HeLa_A485_30min_R1 3 GKPSEQLTPTR 11 1 H0Y613;Q14687-2;Q14687-3;Q14687 H0Y613 GSE1 Genetic suppressor element 1 1 0 GKPS(0.001)EQLT(0.916)PT(0.084)R;GKPS(0.001)EQLT(0.997)PT(0.002)R;GKPSEQLT(0.918)PT(0.082)R ;; 106.76 0.00081372 1711880000 1998550 2281900 1830030 2034570 2561750 2243480 2714940 3052970 1944420 2657310 TRUE FALSE FALSE 2443120.553 2548748.355 2507034.251 2145713.407 2306693.175 2360945.144 2134870.89 2304224.321 2334647.259 1994891.521 1.224688424 1.27763757 1.256727107 1.075604054 1.156300055 1.183495503 1.070168913 1.155062466 1.170312889 1 20.92787887 -1 0.076566792 0.881422831 1.866817606 0.563105733 0.054816734 167.5567063 0.941615628 1.922509593 17.56095934 0.1 1 0.985394775 GKPSEQLT(ph)PTR ddPTM_HeLa_A486_30min_R1 2 GKPSEQLTPTR 11 1 H0Y613;Q14687-2;Q14687-3;Q14687 H0Y613 GSE1 Genetic suppressor element 1 1 0 GKPSEQLT(0.995)PT(0.005)R;GKPSEQLT(0.999)PT(0.001)R ; 134.37 3.29E-05 1454490000 1386210 1415070 956870 481490 1415040 1327240 1496710 1563240 1016150 1564600 TRUE FALSE FALSE 1289043.837 1302934.7 1327395.69 1120933.053 1237552.488 1163498.623 1122217.327 1207324.377 1104230.7 1172813.976 1.099103407 1.110947453 1.13180412 0.955763724 1.055199302 0.992057263 0.95685876 1.029425298 0.94152246 1 20.16154277 -5.255981916 24.99743508 0.992750876 1.113651246 0.742914062 0.03335712 219.4389907 1005117.738 0.008812348 0.014725741 5.55E-06 5.255981916 0.12090037 GKQS(ph)PPGPGK ddPTM_HeLa_A486_30min_R1 1 GKQSPPGPGK 10 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 GKQS(1)PPGPGK 50.284 0.023707 413570000 610200 519380 614550 274520 857170 653870 704880 730520 612260 748480 TRUE FALSE FALSE 567428.1311 478222.4373 852520.2182 639096.4335 749655.7458 573202.1675 528511.5685 564196.5431 665331.1898 561055.7362 1.011357864 0.852361729 1.519492919 1.139096158 1.336152003 1.021649242 0.941994769 1.00559803 1.185855784 1 19.09778457 -6.396726654 18.62041473 1.025729095 1.172246654 0.137080887 0.176209278 5.702007112 821.4443385 0.064443582 0.056833489 4.01E-07 6.396726654 0.146517559 GKRPPT(ph)PCS(ph)DPER ddPTM_HeLa_A485_30min_R1 1 GKRPPTPCSDPER 13 2 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 GKRPPT(1)PCS(1)DPER 54.368 0.036 257340000 297990 443340 421900 293680 476470 483630 498660 607840 420380 349960 TRUE FALSE FALSE 364276.8474 495184.7565 577978.3667 309722.9948 429030.9738 508952.119 392117.2173 458766.2869 504746.41 262721.4125 1.3865518 1.884828312 2.19996673 1.178902746 1.633026291 1.937231206 1.492520969 1.746208208 1.921222961 1 18.00317426 -10.09490547 6.173517057 0.99999816 1.712178298 0.358801425 0.284285404 7.15E-06 1.05E-06 0.273349773 0.066296887 8.04E-11 10.09490547 0.712180138 GKRPPT(ph)PCS(ph)DPER ddPTM_HeLa_A486_30min_R1 3 GKRPPTPCSDPER 13 2 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 GKRPPT(1)PCS(1)DPER;GKRPPT(1)PCS(1)DPER;GKRPPT(1)PCS(1)DPER ;; 78.661 0.003645 451760000 1114800 1245710 955360 443660 1397230 1042070 1233910 1303690 855560 1229220 TRUE FALSE FALSE 1036658.277 1146995.403 1325300.977 1032862.901 1221976.385 913509.9984 925172.667 1006868.246 929720.6297 921415.3111 1.125071685 1.244819127 1.438331837 1.120952614 1.326195007 0.991420467 1.004077809 1.092740954 1.009013654 1 19.81349205 -6.267481283 24.93291653 1.02428608 1.253900801 0.624377978 0.089773919 324.8922862 1340717.812 0.031008073 0.028029838 5.40E-07 6.267481283 0.229614721 GKRPPTPCS(ph)DPER ddPTM_HeLa_A486_30min_R1 1 GKRPPTPCSDPER 13 2 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 GKRPPT(0.039)PCS(0.961)DPER 62.861 0.016586 43479000 88061 82304 62793 35671 91393 78265 95292 96264 57116 100770 TRUE FALSE FALSE 81888.37865 75781.93129 87108.13125 83043.89071 79929.63773 68609.46004 71448.9337 74346.78863 62066.86087 75536.5361 1.084089672 1.003248695 1.153192028 1.099387065 1.058158632 0.908295026 0.945885758 0.984249377 0.821679999 1 16.20488701 -6.181244596 4.675294597 0.931954369 1.083066135 0.630809564 0.056626989 0.148178374 5.875500701 0.018804975 0.018700548 6.59E-07 6.181244596 0.151111766 GKS(ph)RES(ph)VDS(ph)RDS(ph)S(ph)HSR ddPTM_HeLa_A485_30min_R1 1 GKSRESVDSRDSSHSR 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 5 0 GKS(0.999)RES(0.992)VDS(0.973)RDS(0.88)S(0.622)HS(0.534)R 48.641 0.0059669 0 199450 221400 145960 367240 264980 212720 295370 294110 185240 447340 TRUE FALSE FALSE 243816.9644 247290.8041 199956.6779 387301.3913 238597.6608 223857.6903 232261.7865 221979.0614 222415.9689 335826.3707 0.726020902 0.736365055 0.595416844 1.153278673 0.710479229 0.666587588 0.691612711 0.660993539 0.662294532 1 18.357356 -10.54314982 2.796769609 1.013887771 0.735996495 0.230891806 0.14576789 65829073.98 67792599.33 6896821.45 0.036711715 2.86E-11 10.54314982 -0.277891276 GKSEVPEDLAGFIELFQT(ph)PSHTK ddPTM_HeLa_A486_30min_R1 1 GKSEVPEDLAGFIELFQTPSHTK 23 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 GKSEVPEDLAGFIELFQT(0.898)PS(0.101)HT(0.001)K 143.64 2.50E-09 82009000 210280 156950 120060 96966 181380 189410 246230 223310 143820 227890 TRUE FALSE FALSE 195540.4579 144512.7104 166550.4473 225741.7484 158629.6291 166042.52 184620.6496 172467.1878 156286.4334 170824.8607 1.144683842 0.845970018 0.974977803 1.321480653 0.928609738 0.972004422 1.080759843 1.009614099 0.91489279 1 17.38215842 -7.560131471 9.008832271 0.958638297 1.033530133 0.061468079 0.12430908 1.05775634 234.3166334 0.08467277 0.031993409 2.75E-08 7.560131471 0.074891836 GKSEVPEDLAGFIELFQTPS(ph)HTK ddPTM_HeLa_A486_30min_R1 1 GKSEVPEDLAGFIELFQTPSHTK 23 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 GKSEVPEDLAGFIELFQT(0.331)PS(0.547)HT(0.123)K 78.921 0.0030026 114640000 43125 37248 25057 13963 39357 40271 54211 47969 30978 49578 TRUE FALSE FALSE 40102.1602 34296.33283 34759.74145 32506.56965 34420.47807 35302.77347 40646.83441 37047.50586 33663.19798 37163.3461 1.079078296 0.922853737 0.935323244 0.874694371 0.926194266 0.949935277 1.093734517 0.996882944 0.905817197 1 15.18159278 -6.55387524 24.99960106 1.002132639 0.941171556 0.126164645 0.06459971 381.5021776 307689.8811 0.025180148 0.019504655 2.79E-07 6.55387524 -0.060961083 GKT(ph)ANSPGSGARPDPVR ddPTM_HeLa_A486_30min_R1 1 GKTANSPGSGARPDPVR 17 2 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 GKT(0.589)ANS(0.343)PGS(0.068)GARPDPVR 82.586 0.012403 125690000 244180 175380 137410 74944 231210 139190 204650 221490 121180 253570 TRUE FALSE FALSE 227064.2429 161482.2501 190618.832 174473.4195 202209.4859 122018.153 153444.4054 171061.5621 131683.98 190074.4215 1.194607045 0.849573808 1.002864196 0.917921612 1.063843752 0.641949359 0.807285926 0.899971499 0.692802213 1 17.53620487 -6.2438919 24.93047326 0.802080263 0.992043938 0.377846417 0.125881533 865.4769534 1229621.655 0.039396188 0.03930743 5.70E-07 6.2438919 0.189963675 GKT(ph)PEEIR ddPTM_HeLa_A485_30min_R1 2 GKTPEEIR 8 1 E7ERH2;F8W8N3;E5RJR5;P63208-2;P63208 E7ERH2 SKP1 S-phase kinase-associated protein 1 1 0 GKT(1)PEEIR;GKT(1)PEEIR ; 94.767 0.0018114 641380000 1865450 2048150 1937880 2361000 2246700 2237550 2664100 2464700 2082730 3123400 TRUE FALSE FALSE 2280412.917 2287663.326 2654782.454 2489975.452 2023010.659 2354704.658 2094893.271 1860228.461 2500714.807 2344793.862 0.972543026 0.975635156 1.132202919 1.061916568 0.862766955 1.004226724 0.893423215 0.793344136 1.066496654 1 21.16102967 -5.747839827 24.92536712 0.927588352 1.038195097 0.243025128 0.084514568 302.0729422 553638.9757 0.024964755 0.032050438 1.79E-06 5.747839827 0.110606745 GKT(ph)PEEIR ddPTM_HeLa_A486_30min_R1 2 GKTPEEIR 8 1 E7ERH2;F8W8N3;E5RJR5;P63208-2;P63208 E7ERH2 SKP1 S-phase kinase-associated protein 1 1 0 GKT(1)PEEIR;GKT(1)PEEIR ; 98.898 0.0015393 0 2517800 2858200 1817450 900890 2449400 2742500 3205800 3022900 2351300 3635700 TRUE FALSE FALSE 2341315.222 2631705.823 2521215.313 2097317.448 2142173.412 2404158.234 2403674.933 2334651.659 2555112.577 2725297.056 0.859104595 0.965658337 0.925115781 0.769573887 0.786032997 0.882163737 0.881986398 0.856659517 0.937553788 1 21.37798206 -7.972612767 3.094819681 0.999633258 0.86624241 0.385963532 0.054679278 0.261058889 5.759795039 0.058410206 0.015627591 1.07E-08 7.972612767 -0.133390849 GKT(ph)PEEIRK ddPTM_HeLa_A485_30min_R1 4 GKTPEEIRK 9 2 E7ERH2;F8W8N3;E5RJR5;P63208-2;P63208 E7ERH2 SKP1 S-phase kinase-associated protein 1 1 0 GKT(1)PEEIRK;GKT(1)PEEIRK;GKT(1)PEEIRK;GKT(1)PEEIRK ;;; 117.79 0.00055646 13528100000 5410590 4561090 3502860 8107000 5933780 6194760 9545900 9273100 4677980 10395500 TRUE FALSE FALSE 6614157.079 5094469.799 4798713.68 8549864.882 5342992.028 6519108.055 7506340.482 6998857.685 5616807.677 7804093.165 0.847524106 0.65279459 0.614897026 1.095561611 0.684639703 0.835344724 0.961846601 0.896818828 0.719725862 1 22.89579957 -1.000000022 0.063666195 1.188060373 0.042844446 0.154445386 0.140229037 554.4018233 2.632067507 9.087689478 58.04644742 0.099999995 1.000000022 -1.145215927 GKT(ph)PEEIRK ddPTM_HeLa_A486_30min_R1 5 GKTPEEIRK 9 2 E7ERH2;F8W8N3;E5RJR5;P63208-2;P63208 E7ERH2 SKP1 S-phase kinase-associated protein 1 1 0 GKT(1)PEEIRK;GKT(1)PEEIRK;GKT(1)PEEIRK;GKT(1)PEEIRK;GKT(1)PEEIRK ;;;; 121.02 0.00040499 21328820000 8544530 8400000 4056080 4362130 7316860 9232320 12151300 11214310 6619720 13206500 TRUE FALSE FALSE 7945602.571 7734353.408 5626702.802 10155259.09 6399111.192 8093330.226 9110916.217 8661056.42 7193522.66 9899506.44 0.802626133 0.78128677 0.568382155 1.025834889 0.646407094 0.817548862 0.92034045 0.874897801 0.726654677 1 23.23892517 -14 0.11958867 1.654341964 0.699253845 0.204798131 0.123462225 243.864226 1.889744688 38.65218068 1.175640174 1.00E-14 14 -0.955088119 GKTANS(ph)PGSGARPDPVR ddPTM_HeLa_A485_30min_R1 3 GKTANSPGSGARPDPVR 17 2 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 GKT(0.054)ANS(0.748)PGS(0.198)GARPDPVR;GKT(0.032)ANS(0.964)PGS(0.004)GARPDPVR;GKT(0.071)ANS(0.928)PGS(0.002)GARPDPVR ;; 111.49 0.0001037 491510000 256850 480713.6 321120 179995 427314.9 557666.8 575917.3 942074 353889.1 306631.7 TRUE FALSE FALSE 313985.3964 536928.8739 439915.6509 189827.6711 384769.9282 586865.3713 452867.864 711028.8744 424911.3963 230194.0603 1.364003033 2.332505335 1.911064301 0.824641917 1.671502417 2.549437507 1.967330796 3.088823723 1.845883407 1 17.81249108 -6.175512683 8.298342706 2.212491328 1.629823377 0.110490986 0.61959418 0.608048284 53.72007416 0.201101796 0.201181385 6.68E-07 6.175512683 -0.582667951 GKTANS(ph)PGSGARPDPVR ddPTM_HeLa_A486_30min_R1 1 GKTANSPGSGARPDPVR 17 2 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 GKT(0.275)ANS(0.721)PGS(0.003)GARPDPVR 100.67 0.00028643 108380000 243010 181030 142070 74473 242200 138070 209980 232200 117230 262880 TRUE FALSE FALSE 225976.2539 166684.5235 197083.3088 173376.9077 211821.0176 121036.3272 157440.7831 179333.1289 127391.5908 197053.1369 1.146778262 0.845886171 1.000153115 0.879848504 1.074943646 0.614231923 0.798976284 0.910074976 0.646483445 1 17.58822519 -6.246596489 24.9975048 0.788646935 0.976039824 0.349697055 0.132612385 940.0036352 1583098.474 0.041450866 0.041283383 5.67E-07 6.246596489 0.187392888 GKTDS(ph)PWIKPAR ddPTM_HeLa_A485_30min_R1 1 GKTDSPWIKPAR 12 2 A0A0D9SER9;A0A1W2PPZ7;A0A0D9SEQ1;A0A1B0GVZ8;A0A1B0GUD1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GV09;Q9H9B1-4;Q9H9B1-3;Q9H9B1 A0A0D9SER9 EHMT1 Histone-lysine N-methyltransferase EHMT1 1 0 GKTDS(1)PWIKPAR 136.57 5.77E-06 555390000 817450 806940 609190 1054400 1046300 1131500 1433700 1536000 856640 1371200 TRUE FALSE FALSE 999288.9323 901304.6136 834554.7315 1111999.202 942126.6982 1190743.59 1127378.283 1159293.592 1028559.79 1029385.075 0.970762989 0.875575754 0.810731331 1.080255804 0.915232522 1.156752336 1.09519587 1.126200117 0.999198274 1 19.97335134 -5.640013104 1.481613419 1.076224186 0.89132735 0.423465603 0.081516489 0.348636714 1.579455573 0.028763952 0.044370196 2.29E-06 5.640013104 -0.184896837 GKTDS(ph)PWIKPAR ddPTM_HeLa_A486_30min_R1 2 GKTDSPWIKPAR 12 2 A0A0D9SER9;A0A1W2PPZ7;A0A0D9SEQ1;A0A1B0GVZ8;A0A1B0GUD1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GV09;Q9H9B1-4;Q9H9B1-3;Q9H9B1 A0A0D9SER9 EHMT1 Histone-lysine N-methyltransferase EHMT1 1 0 GKT(0.004)DS(0.996)PWIKPAR;GKT(0.002)DS(0.998)PWIKPAR ; 127.71 1.61E-05 1205120000 2362900 2266500 1246330 979310 2297500 2350800 2992500 2925800 1642010 3240000 TRUE FALSE FALSE 2197272.912 2086894.286 1728942.354 2279883.172 2009326.127 2060782.197 2243744.849 2259659.21 1784340.749 2428682.911 0.904717904 0.859269967 0.711884761 0.938732331 0.827331603 0.848518424 0.923852529 0.9304052 0.734694818 1 21.21174271 -6.659434877 9.268438554 0.891366281 0.845624758 0.073877163 0.083364998 0.889058003 73.41104646 0.031131725 0.024078763 2.19E-07 6.659434877 -0.045741523 GKVQFQGK(ac)K ddPTM_HeLa_A486_30min_R1 2 GKVQFQGKK 9 2 P05455 P05455 SSB Lupus La protein 0 1 ; GKVQFQGK(1)K;GKVQFQGK(1)K 107.21 0.023064 101209000 217712 201545 154735 82991 256132 213254 254991 271726 185961 315210 FALSE TRUE FALSE 202451.5131 185573.8402 214652.5359 193207.2421 224005.5362 186944.8897 191189.5548 209859.9215 202080.2492 236279.3643 0.856831123 0.785400116 0.908469246 0.817706797 0.948053745 0.791202779 0.809167383 0.888185569 0.855259831 1 17.85013411 -8.742269593 1.141157294 1.000321522 0.848393769 0.447394764 0.049776779 4.220428178 5.67583873 0.049331229 0.014265104 1.81E-09 8.742269593 -0.151927754 GKYGQFSGLNPGGRPIT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 GKYGQFSGLNPGGRPITPPR 20 2 P62136-3;P62136;P62136-2 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 1 0 GKYGQFSGLNPGGRPIT(1)PPR;GKYGQFSGLNPGGRPIT(1)PPR ; 150.09 1.39E-09 990930000 782490 996520 948490 630980 1048430 1133470 1272620 1282000 931480 937390 TRUE FALSE FALSE 956552.2009 1113054.345 1299375.921 665448.8397 944044.6279 1192816.737 1000714.341 967587.4899 1118419.492 703715.9244 1.359287417 1.581681339 1.846449506 0.945621403 1.341513806 1.695025926 1.422043052 1.374968871 1.589305362 1 19.42463363 -10.39290705 4.320014902 0.998900804 1.461029234 0.264536165 0.23098091 163011481.1 2738.834616 1782363.329 0.056685957 4.05E-11 10.39290705 0.46212843 GKYGQFSGLNPGGRPIT(ph)PPR ddPTM_HeLa_A486_30min_R1 1 GKYGQFSGLNPGGRPITPPR 20 2 P62136-3;P62136;P62136-2 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 1 0 GKYGQFSGLNPGGRPIT(1)PPR 93.093 0.0004802 457380000 299650 311380 285410 97239 343520 305590 350950 341310 305880 367100 TRUE FALSE FALSE 278646.0824 286705.1148 395928.3955 226377.3062 300432.5184 267889.4128 263138.598 263601.1637 332393.9247 275175.7706 1.012611255 1.041898108 1.438819976 0.822664385 1.091784054 0.973521078 0.956256423 0.957937406 1.207933111 1 18.06999392 -5.292784939 24.99994652 1.000407881 1.152188975 0.215634172 0.141876242 1053.728077 840408.7657 0.039271956 0.05825555 5.10E-06 5.292784939 0.151781094 GKYS(ph)PTVQTR ddPTM_HeLa_A485_30min_R1 2 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 1 0 GKYS(0.85)PT(0.15)VQTR;GKY(0.001)S(0.674)PT(0.325)VQTR ; 128.76 4.42E-05 3101820000 1407940 1597240 1546000 1489860 1944420 1658180 2093680 2046140 1446440 2115450 TRUE FALSE FALSE 1721131.396 1784023.324 2117929.734 1571247.279 1750826.718 1744999.741 1646348.164 1544320.957 1736727.24 1588107.247 1.083762699 1.123364513 1.333618834 0.989383609 1.102461261 1.098792128 1.036673164 0.972428631 1.093583096 1 20.59887691 -5.299389309 24.99998655 1.045430033 1.174560512 0.420245095 0.074293089 552.179565 363753.9446 0.021092361 0.031285799 5.02E-06 5.299389309 0.129130479 GKYS(ph)PTVQTR ddPTM_HeLa_A486_30min_R1 2 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 1 0 GKY(0.011)S(0.493)PT(0.493)VQT(0.003)R;GKYS(0.963)PT(0.037)VQTR ; 106.29 0.00044965 3006270000 2122530 2370930 1763870 795590 2454060 2227550 2617740 2555950 1815690 2447030 TRUE FALSE FALSE 1973751.608 2183048.872 2446887.702 1852173.727 2146248.912 1952737.529 1962753.764 1974015.981 1973075.471 1834277.761 1.076037474 1.190140839 1.333978831 1.00975641 1.170078468 1.064581151 1.070041739 1.076181603 1.075668862 1 20.80678069 -5.283658668 24.99899068 1.074158654 1.199061265 0.413897873 0.072374037 787.2949672 885786.5672 0.020199917 0.029986771 5.20E-06 5.283658668 0.124902611 GKYSDDT(ph)PLPTPSYK ddPTM_HeLa_A486_30min_R1 1 GKYSDDTPLPTPSYK 15 1 Q92620 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1 0 GKYSDDT(1)PLPTPSYK 80.859 0.0049048 176280000 174450 192460 120250 62965 194760 179180 208030 211300 141400 204830 TRUE FALSE FALSE 162221.9559 177208.7687 166814.0204 146585.7021 170331.3847 157074.5934 155978.6937 163191.6026 153656.6658 153539.2348 1.056550504 1.154159515 1.086458589 0.954711688 1.109367159 1.023025767 1.015888179 1.062865807 1.000764828 1 17.22824784 -5.016459209 24.61188593 1.028930283 1.109093529 0.376265963 0.044448889 545.811213 816169.5203 0.011251128 0.020219842 9.63E-06 5.016459209 0.080163245 GKYSPT(ph)VQTR ddPTM_HeLa_A485_30min_R1 1 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 1 0 GKYS(0.498)PT(0.502)VQTR 106.32 0.0010963 576210000 324820 373900 334930 367440 475680 413190 489520 500360 374010 542360 TRUE FALSE FALSE 397075.0884 417624.3525 458834.5446 387512.3168 428319.629 434823.9895 384930.053 377645.9255 449070.3764 407159.6334 0.975231963 1.02570176 1.126915605 0.951745421 1.051969778 1.067944742 0.94540328 0.927513178 1.102934426 1 18.63523501 -6.75469998 24.99528935 0.987922152 1.03431183 0.083022765 0.062634667 370.6020521 1374502.443 0.024111734 0.018236315 1.76E-07 6.75469998 0.046389678 GKYSPT(ph)VQTR ddPTM_HeLa_A486_30min_R1 2 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 1 0 GKYS(0.064)PT(0.936)VQTR;GKYS(0.138)PT(0.862)VQTR ; 116.63 0.00051075 1830200000 1166120 1342100 871780 504980 1437670 1391740 1526490 1614570 1105820 1635700 TRUE FALSE FALSE 1084381.01 1235747.108 1209356.563 1175618.96 1257344.023 1220041.269 1144546.056 1246967.657 1201673.368 1226110.073 0.884407553 1.007859845 0.986336047 0.958820081 1.025474018 0.995050359 0.933477411 1.017011183 0.98006973 1 20.22565707 -4.254773878 24.69179369 0.988389536 0.884407497 0.595873595 0.025914959 454.8843655 1685027.945 0.006321583 0.059060237 5.56E-05 4.254773878 -0.103982039 GLAAEDS(ph)GGDSKDLSEVSETTESTDVK ddPTM_HeLa_A486_30min_R1 1 GLAAEDSGGDSKDLSEVSETTESTDVK 27 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 GLAAEDS(0.953)GGDS(0.044)KDLS(0.003)EVSETTESTDVK 97.916 0.00093297 542370000 80407 78691 36879 44303 55313 98584 119860 113860 85524 149110 TRUE FALSE FALSE 74770.88452 72455.23857 51159.53645 103139.6229 48375.12777 86421.70841 89869.76025 87936.56355 92937.28918 111771.8855 0.668959678 0.648242072 0.457713818 0.922768928 0.432802288 0.773197196 0.804046204 0.786750292 0.831490753 1 16.77019782 -7.554324567 0.467656249 1.002670175 0.612202502 0.427421778 0.131876529 0.887490784 0.506361978 0.141983688 0.089927843 2.79E-08 7.554324567 -0.390467672 GLAEVQQDGEAEEGAT(ph)SDGEKKR ddPTM_HeLa_A485_30min_R1 1 GLAEVQQDGEAEEGATSDGEKKR 23 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.5)S(0.5)DGEKKR 68.074 0.0085893 291470000 23420 61522 30688 48641 59558 54600 67015 96804 32144 70512 TRUE FALSE FALSE 28629.6982 68716.46273 42040.76823 51298.13466 53628.1964 57458.77157 52696.69779 73062.66722 38595.00596 52934.65608 0.540849801 1.298137512 0.794201216 0.969084121 1.01310182 1.085466041 0.995504679 1.380242598 0.729106578 1 15.69192494 -5.764265579 2.503560517 1.058243925 0.915532054 0.07403597 0.228668767 0.805181458 10.34271232 0.070983205 0.089710584 1.72E-06 5.764265579 -0.142711871 GLAEVQQDGEAEEGAT(ph)SDGEKKR ddPTM_HeLa_A486_30min_R1 1 GLAEVQQDGEAEEGATSDGEKKR 23 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.699)S(0.301)DGEKKR 183.47 4.19E-20 189510000 97634 73718 49243 100690 113440 101560 194380 231330 60727 226880 TRUE FALSE FALSE 90790.36078 67876.3172 68311.20837 234411.4086 99211.29741 89030.55979 145744.0681 178661.2089 65990.86526 170067.7713 0.533848125 0.399113346 0.40167051 1.378341157 0.583363307 0.523500479 0.85697641 1.050529489 0.388026872 1 17.37575024 GLAEVQQDGEAEEGATS(ph)DGEKKR ddPTM_HeLa_A485_30min_R1 2 GLAEVQQDGEAEEGATSDGEKKR 23 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.02)S(0.98)DGEKKR;GLAEVQQDGEAEEGAT(0.202)S(0.798)DGEKKR ; 185.65 5.08E-21 1082410000 220060 227158 164707 371700 393830 328908 548070 653400 241075 624240 TRUE FALSE FALSE 269011.5878 253722.1521 225638.9733 392005.0298 354618.9024 346129.1143 430970.3672 493152.6255 289456.5412 468628.4563 0.574040232 0.54141431 0.48148799 0.836494294 0.756716537 0.738600291 0.919641907 1.052331797 0.617667445 1 18.83808504 -5.503062843 1.017348011 0.879369495 0.512071681 0.535992635 0.128233237 0.446726633 0.938737512 0.052997382 0.112789554 3.14E-06 5.503062843 -0.367297814 GLAEVQQDGEAEEGATS(ph)DGEKKR ddPTM_HeLa_A486_30min_R1 3 GLAEVQQDGEAEEGATSDGEKKR 23 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.076)S(0.924)DGEKKR;GLAEVQQDGEAEEGAT(0.189)S(0.811)DGEKKR;GLAEVQQDGEAEEGAT(0.074)S(0.926)DGEKKR ;; 263.49 1.06E-61 2466500000 1210763 922938 554745 967371 1308489 1282217 2132855 2066620 769203 2307803 TRUE FALSE FALSE 1125894.766 849801.0316 769557.1206 2252088.576 1144366.108 1124030.103 1599192.12 1596095.74 835878.1354 1729914.108 0.650838537 0.491238859 0.444852792 1.30184994 0.661516143 0.649760643 0.924434406 0.922644502 0.483190542 1 20.72226898 GLAGAVS(ph)ELLR ddPTM_HeLa_A485_30min_R1 2 GLAGAVSELLR 11 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 GLAGAVS(1)ELLR;GLAGAVS(1)ELLR ; 59.542 0.030874 13465400 19831 24644 23109 15601.2 32675 21440 24256 27130 21352 19849.4 TRUE FALSE FALSE 24242.33753 27525.90143 31657.98075 16453.45405 29421.76227 22562.56525 19073.50745 20476.32496 25637.15055 14901.30988 1.626859499 1.847213543 2.124509926 1.104161593 1.974441341 1.514133014 1.279988645 1.374129196 1.720462882 1 13.86315153 -9.910850857 0.090020213 9.61E-14 2.340420904 0.34116201 0.285764301 71.89933471 1.329278263 26.67763502 9.844894603 1.23E-10 9.910850857 2.340420904 GLAGAVS(ph)ELLR ddPTM_HeLa_A486_30min_R1 1 GLAGAVSELLR 11 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 GLAGAVS(1)ELLR 89.403 0.0015704 0 10532 13200 12542 5559.1 16526 12884 12899 16489 10513 8862.6 TRUE FALSE FALSE 9793.761187 12153.98393 17398.59829 12941.86574 14453.15498 11294.50307 9671.533768 12734.81465 11424.2753 6643.347274 1.474220868 1.829497003 2.618950593 1.948094117 2.175583239 1.700122334 1.455822399 1.916927435 1.719656497 1 12.69769462 -6.407537544 5.089921407 1.596807356 2.028031878 0.294294888 0.349070161 0.336811824 12.77849053 0.127689486 0.111403017 3.91E-07 6.407537544 0.431224522 GLAGPPAS(ph)PGK ddPTM_HeLa_A485_30min_R1 5 GLAGPPASPGK 11 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK ;;;; 173.76 2.01E-08 5684120000 7043450 6047030 5130740 10501320 7375850 6759470 9750090 6977040 5896350 14840720 TRUE FALSE FALSE 8610241.153 6754177.556 7028814.234 11074980.52 6641484.476 7113385.397 7666903.621 5265910 7079693.36 11141201.63 0.77282877 0.606234209 0.630884753 0.994056197 0.596119225 0.6384756 0.688157694 0.47265189 0.635451507 1 23.40940151 -10.06543429 5.221873096 1.000004367 0.668563503 0.367410484 0.129667467 6.75E-06 1.21E-06 0.128547079 0.031176835 8.60E-11 10.06543429 -0.331440864 GLAGPPAS(ph)PGK ddPTM_HeLa_A486_30min_R1 6 GLAGPPASPGK 11 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK ;;;;; 186.36 1.30E-10 7863980000 13006400 13098100 7652790 6508690 13002500 14374800 17392400 15813800 10934080 20665700 TRUE FALSE FALSE 12094718.53 12060158.85 10616155.24 15152559.25 11371605.21 12601383.33 13040637.56 12213342.95 11881854.86 15490874.21 0.780764104 0.778533134 0.685316729 0.97816037 0.734084149 0.813471413 0.84182709 0.788421802 0.767022874 1 23.88491523 -10.46383096 2.796943296 1.006399507 0.797724107 0.412462576 0.072884013 23758308.04 25858200.78 1183880.13 0.017400977 3.44E-11 10.46383096 -0.208675401 GLAHQLAS(ph)PGLTTLPEASDVGSITLALR ddPTM_HeLa_A485_30min_R1 2 GLAHQLASPGLTTLPEASDVGSITLALR 28 0 P42345 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 GLAHQLAS(0.987)PGLT(0.011)T(0.001)LPEASDVGSITLALR;GLAHQLAS(0.959)PGLT(0.021)T(0.02)LPEASDVGSITLALR ; 80.832 0.0033963 289550000 60678 97831 93125 64110 108486 82155 91811 115924 75121 88001 TRUE FALSE FALSE 74175.61176 109271.4844 127575.8128 67612.16696 97684.75292 86456.50876 72194.82982 87493.45724 90197.09565 66063.97024 1.122784651 1.654025394 1.931095154 1.023434812 1.478638849 1.308678671 1.092801864 1.324374798 1.36529935 1 16.01157605 -5.275670744 24.98561928 1.249340812 1.577774138 0.305052152 0.234637894 973.4050749 1708978.775 0.065700582 0.097965781 5.30E-06 5.275670744 0.328433326 GLAHQLAS(ph)PGLTTLPEASDVGSITLALR ddPTM_HeLa_A486_30min_R1 2 GLAHQLASPGLTTLPEASDVGSITLALR 28 0 P42345 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 GLAHQLAS(0.994)PGLT(0.005)T(0.001)LPEASDVGSITLALR;GLAHQLAS(1)PGLTTLPEASDVGSITLALR ; 142.72 3.93E-09 310830000 103645 110586 127163 36435 145699 96407 120489 126651 101074 109899 TRUE FALSE FALSE 96380.02072 101822.7626 176403.9191 84822.52132 127424.0728 84513.28453 90341.3778 97815.33207 109835.1757 82379.57508 1.169950447 1.236019517 2.14135505 1.029654757 1.546792062 1.025900952 1.096647776 1.187373593 1.333281649 1 16.32999906 -6.261700821 24.99999489 1.138352078 1.43213027 0.202709461 0.293131 41.67819054 3985262.8 0.099967517 0.09368731 5.47E-07 6.261700821 0.293778193 GLALALFGGEPK ddPTM_HeLa_A485_30min_R1 1 GLALALFGGEPK 12 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 199.67 8.39E-14 16776000 37416 43383 34074 42121 49455 45539 57821 69821 36366 61710 FALSE FALSE TRUE 45739.06012 48456.26447 46679.39054 44421.96357 44531.08655 47923.35162 45467.071 52697.29027 43664.32263 46326.83269 0.987312481 1.045965408 1.00761023 0.958881948 0.961237451 1.034462078 0.981441388 1.137511183 0.942527691 1 15.49956043 GLALALFGGEPK ddPTM_HeLa_A486_30min_R1 2 GLALALFGGEPK 12 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 ; ; 188.04 3.06E-09 28474000 79076 76824 50724 28113 76066 75216 86947 80940 60526 99178 FALSE FALSE TRUE 73533.18075 70736.18645 70365.69124 65448.48475 66525.09299 65936.61466 65191.94097 62511.72891 65772.44241 74343.18326 0.989104549 0.951481808 0.946498228 0.880356233 0.894837833 0.886922133 0.876905428 0.840853541 0.88471383 1 16.18191284 -4.980528792 1.5807795 0.886248854 0.980366731 0.368535094 0.039970446 0.393483056 1.843784758 0.011587035 0.037504378 1.05E-05 4.980528792 0.094117877 GLAPDLPEDLYHLIK ddPTM_HeLa_A485_30min_R1 4 GLAPDLPEDLYHLIK 15 0 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 0 ;;; ;;; 169.62 1.27E-11 111564700 138297.6 151601.3 144688 159246.3 178645 144305.9 185638.9 171607.8 156686.2 226511 FALSE FALSE TRUE 169061.424 169329.7533 198214.1122 167945.5221 160858.4765 151861.5338 145975.6325 129520.718 188131.6831 170045.9763 0.994210082 0.995788062 1.165650117 0.987647728 0.945970496 0.893061612 0.858448025 0.761680581 1.106357746 1 17.37556534 -5.713330077 2.805906029 0.907409614 1.04897935 0.235476001 0.096444699 0.333980814 5.364100836 0.030505202 0.039407617 1.93E-06 5.713330077 0.141569736 GLAPDLPEDLYHLIK ddPTM_HeLa_A486_30min_R1 2 GLAPDLPEDLYHLIK 15 0 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 0 ; ; 161.63 2.43E-11 60664000 172133 201933 142330 85152 301270 185377 208283 210126 165561 217220 FALSE FALSE TRUE 160067.3656 185931.0937 197443.9877 198238.1593 263481.9074 162507.0705 156168.3904 162284.8968 179911.9608 162826.6981 0.983053562 1.141895621 1.212602049 1.217479453 1.618173865 0.998037007 0.95910801 0.996672528 1.104929123 1 17.31297775 GLAPDLPEDLYHLIKK ddPTM_HeLa_A485_30min_R1 1 GLAPDLPEDLYHLIKK 16 1 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 0 126.48 2.88E-05 12067000 14376 26861 13826 12620 26854 32207 37754 51447 20087 19858 FALSE FALSE TRUE 17573.8916 30002.16029 18940.81275 13309.39864 24180.32147 33893.30872 29687.54948 38829.54258 24118.27665 14907.76606 1.178841386 2.012518856 1.270533269 0.892782902 1.621994964 2.273533713 1.991415036 2.604651993 1.617833051 1 13.86377646 -6.006895901 24.20623273 1.997438797 1.366366181 0.220349893 0.476455783 276.3025708 969893.4863 0.146807564 0.160200154 9.84E-07 6.006895901 -0.631072616 GLAPNT(ph)PGK ddPTM_HeLa_A485_30min_R1 5 GLAPNTPGK 9 0 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK ;;;; 128.08 0.0012919 7621740000 14635730 13803280 11900110 20244450 18257970 16020570 21857540 20919890 12969270 25868300 TRUE FALSE FALSE 17891397.65 15417453.52 16302455.89 21350353.04 16440142.4 16859382.27 17187498.02 15789254.18 15572083.53 19419808.88 0.921296278 0.793903463 0.839475609 1.099411079 0.846565612 0.868153872 0.885049803 0.813048896 0.801865952 1 24.21102567 GLAPNT(ph)PGK ddPTM_HeLa_A486_30min_R1 7 GLAPNTPGK 9 0 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK;GLAPNT(1)PGK ;;;;;; 150.33 0.00034133 8521850000 23179640 23447520 13988300 10728290 21500750 24363060 30965240 27657350 18221460 32324160 TRUE FALSE FALSE 21554866.94 21589453.12 19404944.38 24976001.3 18803925.45 21357393.36 23217409.44 21360375.16 19800910.82 24229979.94 0.889594915 0.891022327 0.800865062 1.030789186 0.776060298 0.881444946 0.958210015 0.881568008 0.817207066 1 24.53028987 -10.3239912 4.141462543 1.00018659 0.882360156 0.203182426 0.070780826 0.0001165 1.90E-05 0.065473588 0.015854581 4.74E-11 10.3239912 -0.117826434 GLDDS(ph)TGGTPLTPAAR ddPTM_HeLa_A485_30min_R1 1 GLDDSTGGTPLTPAAR 16 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L2T8;I3L522 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 GLDDS(0.945)T(0.055)GGTPLTPAAR 69.522 0.0066499 2346400000 462800 1197100 1600000 123950 1050900 780410 428990 467470 977060 164930 TRUE FALSE FALSE 565748.2634 1337090.432 2191906.582 130721.0746 946268.7061 821271.0609 337332.782 352822.2495 1173146.98 123815.9863 4.569266701 10.79901289 17.70293681 1.055768956 7.64254063 6.63299696 2.724468722 2.84956943 9.474923351 1 16.91783807 -5.279823765 24.98947889 4.707932639 11.00126746 0.364766446 3.947665946 878.1258819 1193614.557 1.107949782 1.646830544 5.25E-06 5.279823765 6.29333482 GLDDS(ph)TGGTPLTPAAR ddPTM_HeLa_A486_30min_R1 1 GLDDSTGGTPLTPAAR 16 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L2T8;I3L522 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 GLDDS(0.499)T(0.499)GGT(0.001)PLT(0.001)PAAR 51.225 0.034718 1695500000 798310 1539100 2346600 99366 1959000 613040 458340 713180 1556900 219480 TRUE FALSE FALSE 742352.5915 1417136.111 3255266.364 231329.0697 1713283.953 537409.3577 343658.4842 550804.4826 1691853.346 164520.7794 4.512211734 8.61372111 19.78635389 1.406078129 10.41378456 3.266513565 2.088845466 3.347932611 10.28352377 1 17.32791029 -5.326206114 24.999996 4.730713684 10.73539273 0.277931837 4.735902324 272.5038793 105185.8531 1.329369951 1.971774582 4.72E-06 5.326206114 6.004679047 GLDDST(ph)GGTPLTPAAR ddPTM_HeLa_A485_30min_R1 1 GLDDSTGGTPLTPAAR 16 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L2T8;I3L522 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 GLDDS(0.136)T(0.852)GGT(0.006)PLT(0.007)PAAR 61.167 0.03111 2057900000 370390 967770 1082700 166530 760870 598050 379000 477690 815110 213370 TRUE FALSE FALSE 452781.9777 1080942.283 1483235.785 175627.1122 685115.1112 629362.9732 298023.5539 360535.7785 978695.1004 160180.7858 2.826693448 6.74826433 9.259760949 1.096430582 4.277136661 3.929079072 1.860544961 2.250805406 6.109940687 1 17.28934158 -5.27231027 24.92911211 3.037057492 6.325242201 0.354177587 2.066986256 750.31333 1720616.295 0.576416404 0.864586798 5.34E-06 5.27231027 3.288184709 GLDFLHANCIVHR ddPTM_HeLa_A485_30min_R1 1 GLDFLHANCIVHR 13 0 F8VXD2;F8VYH9;F8VZZ0;F8VTV8;F8VWX7;F8VZ51;P11802-2;P11802 F8VXD2 CDK4 Cyclin-dependent kinase 4 0 0 101.32 0.0013695 62046000 45102 68038 76734 43219 79042 60737 70920 75315 58534 62787 FALSE FALSE TRUE 55134.7843 75994.45225 105121.0998 45579.94453 71172.30095 63917.0954 55767.36264 56843.87816 70281.23689 47135.35641 1.169711836 1.612260054 2.230196349 0.967001164 1.509955718 1.356032929 1.1831323 1.205971112 1.491051352 1 15.52452202 -5.289437885 24.99970146 1.266438605 1.664876873 0.305998062 0.292672276 909.7830607 812338.0405 0.082083983 0.121778585 5.14E-06 5.289437885 0.398438268 GLDIESYDS(ph)LERPLR ddPTM_HeLa_A485_30min_R1 3 GLDIESYDSLERPLR 15 1 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GLDIESYDS(1)LERPLR;GLDIESYDS(1)LERPLR;GLDIES(0.001)YDS(0.999)LERPLR ;; 212.9 2.26E-26 262059000 284736 267042 336366 326814 342429 244391 304317 239430 298171 435061 TRUE FALSE FALSE 348074.5409 298270.2389 460801.7808 344667.0213 308335.5664 257186.9349 239297.1869 180709.4171 358011.1847 326608.2994 1.065724727 0.913235333 1.410869784 1.055291681 0.944053066 0.787447641 0.73267332 0.553290953 1.096148461 1 18.31720193 -5.921964354 2.555675926 0.801495148 1.121646354 0.338482596 0.180555937 0.296268504 3.929712353 0.061407544 0.070282753 1.20E-06 5.921964354 0.320151205 GLDIESYDS(ph)LERPLR ddPTM_HeLa_A486_30min_R1 4 GLDIESYDSLERPLR 15 1 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GLDIESYDS(1)LERPLR;GLDIESYDS(1)LERPLR;GLDIESYDS(1)LERPLR;GLDIESYDS(1)LERPLR ;;; 214.5 8.41E-27 337921000 369623 480812 436999 136929 468047 437035 432283 437412 442932 410018 TRUE FALSE FALSE 343714.3364 442710.706 606216.716 318777.632 409340.1809 383118.0651 324121.2212 337822.8362 481325.7024 307346.824 1.118327276 1.440427138 1.972419002 1.037191886 1.331851019 1.246533347 1.054578072 1.099158377 1.566066947 1 18.22950805 GLDIESYDS(ph)LERPLRK ddPTM_HeLa_A485_30min_R1 4 GLDIESYDSLERPLRK 16 2 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GLDIESYDS(1)LERPLRK;GLDIESYDS(1)LERPLRK;GLDIESYDS(1)LERPLRK;GLDIESYDS(1)LERPLRK ;;; 240.61 8.02E-42 5022560000 4945300 5764100 4847050 4946300 6754200 6252300 7333100 8150000 5059000 6430700 TRUE FALSE FALSE 6045364.924 6438161.354 6640175.498 5216503.844 6081728.133 6579660.76 5766323.279 6151199.721 6074294.896 4827644.838 1.252238954 1.333602941 1.37544822 1.080548387 1.259771242 1.362913176 1.194438173 1.27416161 1.258231519 1 22.20288811 -12.58740249 0.353923653 4.82E-12 1.275596049 0.493186024 0.080966492 131.0846369 2.791960007 96.9880854 0.06331837 2.59E-13 12.58740249 1.275596049 GLDIESYDS(ph)LERPLRK ddPTM_HeLa_A486_30min_R1 4 GLDIESYDSLERPLRK 16 2 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GLDIESYDS(1)LERPLRK;GLDIESYDS(1)LERPLRK;GLDIESYDS(1)LERPLRK;GLDIESYDS(1)LERPLRK ;;; 232.84 3.36E-35 4243960000 3502350 3567310 2901720 1422200 4317830 3609460 4425970 4470410 2954960 4185970 TRUE FALSE FALSE 3256853.351 3284623.364 4025343.695 3310953.474 3776247.499 3164161.524 3318545.493 3452595.231 3211098.312 3137775.866 1.037949647 1.046799868 1.282865274 1.055191198 1.203479044 1.008409032 1.057610752 1.100332012 1.023367649 1 21.58131087 -6.280879829 24.93245321 1.045443819 1.125761755 0.24866508 0.07532096 1303.187888 1671337.466 0.026449789 0.023355444 5.24E-07 6.280879829 0.080317935 GLDS(ph)GAETEEEKDTWEEK ddPTM_HeLa_A485_30min_R1 1 GLDSGAETEEEKDTWEEK 18 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GLDS(0.997)GAET(0.003)EEEKDTWEEK 121.26 1.28E-05 149030000 59559 54364 37038 127550 68994 84496 132860 101000 62816 188180 TRUE FALSE FALSE 72807.69407 60721.3969 50739.89748 134517.7335 62124.71511 88920.0799 104473.3756 76229.59164 75422.59502 141270.1892 0.515379037 0.42982456 0.359169176 0.952201836 0.439758136 0.629432723 0.739528815 0.539601398 0.533888964 1 17.10809754 -14 0.189064901 2.765956493 0.497846321 0.388953978 0.162146577 148.4806216 1.450096312 99.23020049 0.454077673 1.00E-14 14 -2.268110171 GLECSDWKPEAGLS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 GLECSDWKPEAGLSPPR 17 1 S4R419;S4R3M9;O75764-2;O75764 S4R419 TCEA3 Transcription elongation factor A protein 3 1 0 GLECSDWKPEAGLS(1)PPR;GLECSDWKPEAGLS(1)PPR;GLECSDWKPEAGLS(1)PPR;GLECSDWKPEAGLS(1)PPR ;;; 111.38 7.17E-05 3215550000 1058440 1173080 1010450 1535380 1445590 1374700 1822930 1926440 1151990 1956120 TRUE FALSE FALSE 1293886.326 1310261.502 1384257.503 1619253.922 1301661.984 1446677.166 1433446.114 1453977.569 1383183.826 1468495.284 0.881096685 0.892247674 0.942636669 1.102661983 0.886391668 0.985142535 0.976132596 0.990113884 0.941905529 1 20.4859072 -4.884566009 4.245051456 0.98127222 0.887061063 0.357677763 0.051076086 0.224685201 7.126450793 0.013200969 0.02976632 1.30E-05 4.884566009 -0.094211157 GLECSDWKPEAGLS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 GLECSDWKPEAGLSPPR 17 1 S4R419;S4R3M9;O75764-2;O75764 S4R419 TCEA3 Transcription elongation factor A protein 3 1 0 GLECSDWKPEAGLS(1)PPR;GLECSDWKPEAGLS(1)PPR;GLECSDWKPEAGLS(1)PPR;GLECSDWKPEAGLS(1)PPR ;;; 120.41 2.38E-05 3495720000 2097050 2258650 1436630 916480 2133120 2182670 2676320 2560740 1815180 2894030 TRUE FALSE FALSE 1950057.624 2079666.348 1992931.61 2133611.756 1865564.199 1913394.367 2006676.429 1977715.403 1972521.264 2169346.051 0.898914963 0.95866049 0.918678516 0.983527619 0.859966163 0.882014359 0.925014443 0.911664325 0.909269991 1 21.04882878 -10.12273998 4.087145372 1.000018391 0.917137016 0.360999088 0.033350161 9164640.582 7566102.071 1527.208426 0.008253164 7.54E-11 10.12273998 -0.082881375 GLECSDWKPEAGLS(ph)PPRK ddPTM_HeLa_A486_30min_R1 2 GLECSDWKPEAGLSPPRK 18 2 S4R419;S4R3M9;O75764-2;O75764 S4R419 TCEA3 Transcription elongation factor A protein 3 1 0 GLECS(0.001)DWKPEAGLS(0.999)PPRK;GLECSDWKPEAGLS(1)PPRK ; 97.253 0.00020432 411090000 541940 525250 242310 220970 484720 538570 668270 669850 393970 783430 TRUE FALSE FALSE 503952.8046 483627.2771 336138.9213 514429.3272 423921.8978 472126.7092 501061.7778 517339.7777 428119.6368 587254.0287 0.858151294 0.823540161 0.572391001 0.875991142 0.721871417 0.803956527 0.853228336 0.880947175 0.729019497 1 19.16362518 -13.99997721 0.213040026 2.029589117 0.761887977 0.322345971 0.09041747 174.682455 1.744131211 76.78540233 0.185806968 1.00E-14 13.99997721 -1.26770114 GLEERLS(ph)PPLPHEER ddPTM_HeLa_A486_30min_R1 1 GLEERLSPPLPHEER 15 1 Q9UPV0 Q9UPV0 CEP164 Centrosomal protein of 164 kDa 1 0 GLEERLS(1)PPLPHEER 110.77 0.00013457 45221000 25367 29122 29121 10704 38844 26421 32927 33773 26353 32143 TRUE FALSE FALSE 23588.9043 26814.26666 40397.43109 24919.45295 33971.82331 23161.44565 24688.31633 26083.62516 28637.29926 24094.18358 0.979028993 1.112893764 1.676646604 1.034251809 1.409959511 0.961287838 1.024658762 1.082569371 1.188556531 1 14.5563973 -6.27433032 24.98230525 1.054902854 1.247896352 0.194437982 0.194312163 1365.199852 2645713.344 0.068477242 0.060779346 5.32E-07 6.27433032 0.192993497 GLEFPMTDLDMLS(ph)PIHTPQR ddPTM_HeLa_A485_30min_R1 2 GLEFPMTDLDMLSPIHTPQR 20 0 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 GLEFPMTDLDMLS(1)PIHTPQR;GLEFPMTDLDMLS(1)PIHTPQR ; 185.5 3.56E-19 168984000 115104 162456 174029 128710 174812 145141 160290 158592 146793 154854 TRUE FALSE FALSE 140708.4877 181453.816 238409.5691 135741.1014 157407.1035 152740.3583 126042.7321 119697.0633 176253.0086 116251.7477 1.210377397 1.560869575 2.050804171 1.167647834 1.354019244 1.313875803 1.084222255 1.029636678 1.51613212 1 16.82689288 GLEFPMTDLDMLS(ph)PIHTPQR ddPTM_HeLa_A486_30min_R1 1 GLEFPMTDLDMLSPIHTPQR 20 0 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 GLEFPMTDLDMLS(1)PIHTPQR 95.926 0.00027585 88225000 52545 59528 59545 18353 64357 47061 52077 54195 48577 51046 TRUE FALSE FALSE 48861.86684 54810.78448 82602.41867 42726.71151 56284.74495 41255.0923 39046.78379 41855.98157 52787.69347 38263.74935 1.276975406 1.432446778 2.158764368 1.116636823 1.470967846 1.078176943 1.020464133 1.093880821 1.379574516 1 15.22369063 -5.793784691 1.706545619 1.126813408 1.578276091 0.326221014 0.270315323 0.422654392 2.546950311 0.098063059 0.127440791 1.61E-06 5.793784691 0.451462683 GLEFPMTDLDMLSPIHT(ph)PQR ddPTM_HeLa_A485_30min_R1 1 GLEFPMTDLDMLSPIHTPQR 20 0 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 GLEFPMTDLDMLS(0.012)PIHT(0.988)PQR 98.121 0.00036798 10257000 8062.9 12157 14442 9771.2 14685 12608 14165 14777 11730 11629 TRUE FALSE FALSE 9856.464288 13578.6554 19784.69678 10304.97591 13222.90984 13268.13538 11138.53203 11152.91758 14084.10341 8730.104316 1.129020219 1.555382949 2.266261211 1.180395507 1.514633658 1.519814071 1.275876167 1.277523976 1.613280082 1 13.09178318 -10.2196553 0.227076523 0.616732021 1.599649438 0.179260507 0.307029804 33.31419598 1.574245252 8.420591968 0.668970066 6.03E-11 10.2196553 0.982917418 GLEFPMTDLDMLSPIHT(ph)PQR ddPTM_HeLa_A486_30min_R1 1 GLEFPMTDLDMLSPIHTPQR 20 0 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 GLEFPMTDLDMLSPIHT(1)PQR 144.63 2.80E-09 8886200 12373 12516 12550 2263 18880 11721 12452 14096 12786 12172 TRUE FALSE FALSE 11505.71659 11524.18658 17409.6961 5268.378366 16511.89435 10274.98219 9336.377896 10886.64851 13894.30077 9124.051974 1.261031461 1.263055779 1.908110141 0.577416523 1.809710685 1.126142444 1.023271012 1.193181335 1.52282131 1 13.15545895 GLEGERPAR ddPTM_HeLa_A485_30min_R1 4 GLEGERPAR 9 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435;A0A2R8Y6L3 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ;;; ;;; 133.13 0.00049053 684938000 200472.1 336257.3 379167.8 174969.4 320708.1 308198.1 301142 370151 324457.1 232338.2 FALSE FALSE TRUE 245066.427 375579.6662 519437.7477 184527.5353 288777.2755 324334.876 236800.5516 279370.8869 389572.6639 174420.5626 1.405031743 2.153299247 2.978076323 1.057945993 1.655637794 1.859499081 1.357641255 1.601708438 2.233524867 1 17.41221061 -5.27937061 24.99639281 1.573848326 2.176252287 0.261915281 0.490374161 1142.464097 1592608.785 0.137692352 0.204707191 5.26E-06 5.27937061 0.602403962 GLEGERPAR ddPTM_HeLa_A486_30min_R1 2 GLEGERPAR 9 1 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435;A0A2R8Y6L3 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ; ; 80.787 0.009861 362010000 209350 265470 281060 61207 337360 187388 202154 239660 241340 207170 FALSE FALSE TRUE 194675.6461 244433.1904 389893.959 142492.9892 295045.163 164269.9738 151572.931 185094.6497 262259.5455 155293.2835 1.253599909 1.574010059 2.510694282 0.91757342 1.899922239 1.057804755 0.976043056 1.191903768 1.688801599 1 17.24463591 -6.272435807 24.8228326 1.181975388 1.637204309 0.213576254 0.429992199 1092.720058 2466648.791 0.149951873 0.133506334 5.34E-07 6.272435807 0.455228921 GLEGKS(ph)PDTGPDWLK ddPTM_HeLa_A485_30min_R1 2 GLEGKSPDTGPDWLK 15 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 GLEGKS(0.584)PDT(0.416)GPDWLK;GLEGKS(0.966)PDT(0.034)GPDWLK ; 162.76 3.16E-12 533950000 629490 461220 331770 1147590 669890 668250 1085500 871260 497340 1477180 TRUE FALSE FALSE 769517.8788 515155.6669 454505.5291 1210279.936 603193.3995 703238.5367 853574.0573 657582.1189 597151.5761 1108946.211 0.693918128 0.464545225 0.409853539 1.091378394 0.543933866 0.634150268 0.769716374 0.592979274 0.538485609 1 20.08075796 -11.06099826 2.646811003 1.52380679 0.638924677 0.264238025 0.181375835 11309294.25 4889727.237 35869471.77 0.045246764 8.69E-12 11.06099826 -0.884882113 GLEGKS(ph)PDTGPDWLK ddPTM_HeLa_A486_30min_R1 1 GLEGKSPDTGPDWLK 15 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 GLEGKS(0.797)PDT(0.203)GPDWLK 174.02 8.90E-13 217720000 403940 378080 180620 241020 366860 514660 621180 582230 331340 770700 TRUE FALSE FALSE 375625.8919 348119.5639 250560.9012 561106.7405 320844.998 451166.4819 465754.1938 449668.939 360060.818 577711.7036 0.650196092 0.602583541 0.433712697 0.971257354 0.555372162 0.780954374 0.806205225 0.778362176 0.62325346 1 19.1399902 -14 0.068248201 2.013010664 0.314449202 0.33301532 0.139834309 377.6173243 1.856647661 61.51631056 8.047155958 1.00E-14 14 -1.698561462 GLEGNANS(ph)PAHLRGPEQTSGQTAK ddPTM_HeLa_A485_30min_R1 1 GLEGNANSPAHLRGPEQTSGQTAK 24 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 GLEGNANS(1)PAHLRGPEQTSGQTAK 158.66 1.76E-10 360690000 156400 149600 139580 186570 190280 172950 198120 188090 163780 232820 TRUE FALSE FALSE 191190.6404 167094.4187 191216.4504 196761.8467 171335.0551 182005.3946 155790.0435 141960.6326 196649.1437 174782.2587 1.093878989 0.956014757 1.094026658 1.125754113 0.980277154 1.041326482 0.891337855 0.812214201 1.125109294 1 17.41519923 -6.710764289 10.37620996 0.941572514 1.046932465 0.192886153 0.089291936 0.679272476 135.3233888 0.033667515 0.026023905 1.95E-07 6.710764289 0.105359951 GLEGNANS(ph)PAHLRGPEQTSGQTAK ddPTM_HeLa_A486_30min_R1 1 GLEGNANSPAHLRGPEQTSGQTAK 24 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 GLEGNANS(1)PAHLRGPEQTSGQTAK 225.44 1.84E-38 224820000 238470 240350 177280 78551 266070 248160 286270 281090 176460 273010 TRUE FALSE FALSE 221754.4845 221303.7907 245927.5637 182870.6977 232697.0196 217544.5423 214642.2181 217091.9432 191755.6949 204646.519 1.083597637 1.081395333 1.201718773 0.893593004 1.137068056 1.063025862 1.048843729 1.060814248 0.937009316 1 17.6427746 -7.693674856 6.650267953 0.969130446 1.071719856 0.232834136 0.074695115 0.275125857 20.93969919 0.050535568 0.018384281 2.02E-08 7.693674856 0.10258941 GLEGNANS(ph)PAHLRGPEQTSGQTAKDPSVSIR ddPTM_HeLa_A485_30min_R1 2 GLEGNANSPAHLRGPEQTSGQTAKDPSVSIR 31 2 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 GLEGNANS(0.992)PAHLRGPEQT(0.003)S(0.003)GQT(0.001)AKDPSVSIR;GLEGNANS(0.937)PAHLRGPEQT(0.021)S(0.021)GQT(0.021)AKDPSVSIR ; 91.976 0.00012512 1137050000 220150 513360 346830 160758 456450 472150 532500 871490 302650 252760 TRUE FALSE FALSE 269121.608 573392.9864 475136.8498 169539.8025 411004.2353 496871.0439 418727.0249 657755.7111 363389.0789 189751.5837 1.418283857 3.021808699 2.50399412 0.893482938 2.166012147 2.618534371 2.206711621 3.466404328 1.915077976 1 17.5337524 -6.006119762 24.93327874 2.393213796 2.006125575 0.008672804 0.79183115 974.8071175 3971604.863 0.24788737 0.271957497 9.86E-07 6.006119762 -0.387088221 GLESTTLADKDGEIYCK ddPTM_HeLa_A485_30min_R1 2 GLESTTLADKDGEIYCK 17 1 P21291;E9PP21;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 0 ; ; 201.12 1.31E-18 51773000 51839 44813 38044 67919 74731 54684 74959 79733 51903 96167 FALSE FALSE TRUE 63370.40671 50053.49053 52118.05874 71629.24299 67290.51924 57547.16968 58943.39729 60178.35673 62319.45602 72194.33672 0.877775316 0.693316025 0.721913395 0.992172603 0.932074762 0.797114736 0.816454586 0.833560629 0.86321807 1 16.13959805 -14 0.160373686 1.600082486 0.791075546 0.262785423 0.083892927 204.6566478 1.881684903 39.26655294 0.389240412 1.00E-14 14 -0.80900694 GLFIIDDK ddPTM_HeLa_A485_30min_R1 4 GLFIIDDK 8 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;H7C3T4;Q13162 Q06830;H7C3T4 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 ;;; ;;; 162.5 0.0002052 586876000 787943 705413 646867 993830 922800 763677 1017020 921240 694895 1243790 FALSE FALSE TRUE 963218.202 787904.9141 886170.0217 1048120.416 830922.7919 803661.9469 799725.3687 695304.4456 834354.0525 933736.0433 1.031574404 0.843819749 0.949058385 1.122501829 0.889890454 0.860695003 0.85647906 0.744647752 0.89356522 1 19.83265525 -5.983051468 24.8663375 0.856548492 0.977883365 0.275505291 0.087800175 290.4825958 426184.1178 0.027372176 0.031030059 1.04E-06 5.983051468 0.121334873 GLFIIDDK ddPTM_HeLa_A486_30min_R1 4 GLFIIDDK 8 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;H7C3T4;Q13162 Q06830;H7C3T4 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 ;;; ;;; 177.1 3.90E-06 644630000 814298 911745 621897 457389 1391172 919942 1084555 1019693 724416 1053841 FALSE FALSE TRUE 757219.9152 839495.0057 862712.1734 1064824.707 1216678.236 806448.9093 813187.8677 787531.1636 787208.9622 789952.3542 0.958564034 1.062715999 1.092106592 1.347960673 1.540191923 1.020882975 1.029413816 0.996935017 0.996527142 1 19.59140611 -6.476455627 24.99849704 1.008275002 1.203423805 0.287842609 0.150742204 620.4824445 334125.4275 0.059321795 0.052315168 3.34E-07 6.476455627 0.195148803 GLFIIDDKGILR ddPTM_HeLa_A485_30min_R1 3 GLFIIDDKGILR 12 1 Q06830;A0A0A0MSI0;A0A0A0MRQ5;H7C3T4;Q13162 Q06830;H7C3T4 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 ;; ;; 161.94 3.77E-10 515960000 388956 717232 531164 282500 734039 894021 1025128 1711780 476899 443295 FALSE FALSE TRUE 475477.9203 801106.0433 727663.6672 297932.2597 660955.4998 940830.5571 806101.0283 1291963.271 572608.2549 332789.7147 1.428763869 2.407243998 2.186556961 0.895256814 1.986105551 2.827102267 2.422253431 3.882221156 1.720630866 1 18.34425132 -6.096800606 5.8654014 2.547597912 1.768137632 0.105156397 0.801204358 0.412663751 20.43875136 0.257839297 0.259296616 8.00E-07 6.096800606 -0.77946028 GLFIIDDKGILR ddPTM_HeLa_A486_30min_R1 2 GLFIIDDKGILR 12 1 Q06830;A0A0A0MSI0;A0A0A0MRQ5;H7C3T4;Q13162 Q06830;H7C3T4 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 ; ; 153.63 1.07E-07 262460000 416780 326620 285820 193414 531430 325700 499900 547890 227304 509680 FALSE FALSE TRUE 387565.8743 300737.4417 396497.1585 450277.5666 464773.094 285518.4455 374819.7326 423147.4074 247006.8937 382052.8105 1.014430109 0.787161967 1.037807203 1.17857415 1.216515312 0.747327169 0.981067858 1.107562608 0.646525525 1 18.54341255 -6.265727944 24.9974312 0.908505008 1.039278305 0.174428605 0.162132888 836.3500439 4874950.42 0.058649248 0.053566799 5.42E-07 6.265727944 0.130773297 GLFITIHDR ddPTM_HeLa_A485_30min_R1 1 GLFITIHDR 9 0 P48163;P48163-2 P48163 ME1 NADP-dependent malic enzyme 0 0 145.17 0.00010802 25532000 18438 26432 31890 19222 32685 27849 26513 33339 23921 27446 FALSE FALSE TRUE 22539.46949 29522.99247 43687.43805 20272.04919 29430.76664 29307.13058 20848.28096 25162.55798 28721.72528 20604.21731 1.093925052 1.432861634 2.120315341 0.983878634 1.428385568 1.422385046 1.011845325 1.221233382 1.39397313 1 14.33065204 -6.151524892 1.088591836 1.186341417 1.475625063 0.119722678 0.304211814 1.108827078 2.764430868 0.159161709 0.159725434 7.05E-07 6.151524892 0.289283646 GLFITIHDR ddPTM_HeLa_A486_30min_R1 1 GLFITIHDR 9 0 P48163;P48163-2 P48163 ME1 NADP-dependent malic enzyme 0 0 141.88 0.00013897 21033000 27209 29739 28210 7277.2 34230 25745 29068 28562 28088 29548 FALSE FALSE TRUE 25301.78961 27382.37333 39133.66749 16941.68937 29936.55422 22568.84366 21794.87895 22059.0561 30522.69046 22148.98847 1.142345152 1.236280987 1.766837684 0.764896753 1.35159916 1.018955953 0.984012384 0.995939662 1.378062501 1 14.43495319 -5.272310566 24.99720965 1.076287787 1.36726727 0.282277803 0.227004418 950.3857521 2185315.374 0.062374745 0.093550231 5.34E-06 5.272310566 0.290979483 GLFQDEDS(ph)CS(ph)DCSYR ddPTM_HeLa_A485_30min_R1 1 GLFQDEDSCSDCSYR 15 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 2 0 GLFQDEDS(1)CS(1)DCSYR 123.14 2.55E-05 0 66527 82466 113500 97920 131730 71163 98047 90780 99813 133820 TRUE FALSE FALSE 81325.70163 92109.68134 155488.3731 103269.1217 118614.4987 74888.98464 77098.45748 68516.06266 119844.5536 100461.1368 0.809524003 0.916868794 1.547746503 1.027950957 1.180700343 0.745452292 0.767445601 0.682015602 1.19294443 1 16.61627798 -6.257018418 24.97086243 0.850814685 1.107829896 0.182969693 0.227271585 588.2924681 3322849.755 0.077973762 0.075454246 5.53E-07 6.257018418 0.257015211 GLFQDEDS(ph)CSDCSYR ddPTM_HeLa_A485_30min_R1 3 GLFQDEDSCSDCSYR 15 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 GLFQDEDS(0.936)CS(0.064)DCSYR;GLFQDEDS(1)CSDCSYR;GLFQDEDS(0.965)CS(0.035)DCSYR ;; 258.34 2.55E-50 634740000 343060 379920 497310 376163 622810 371420 441080 380630 429290 499680 TRUE FALSE FALSE 419372.5135 424348.3391 681285.6638 396711.8322 560800.8496 390866.9769 346839.6547 287279.8957 515444.5653 375118.9719 1.117972016 1.131236677 1.81618557 1.057562698 1.494994632 1.041981361 0.924612405 0.765836754 1.374082901 1 18.5169887 -6.386920015 6.333329597 0.995257892 1.324627436 0.266652721 0.249737938 0.318130656 15.09785248 0.087139492 0.076532993 4.10E-07 6.386920015 0.329369544 GLFQDEDS(ph)CSDCSYR ddPTM_HeLa_A486_30min_R1 3 GLFQDEDSCSDCSYR 15 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 GLFQDEDS(0.97)CS(0.03)DCSYR;GLFQDEDS(0.922)CS(0.078)DCSYR;GLFQDEDS(0.918)CS(0.082)DCSYR ;; 297.56 2.61E-67 729210000 297077 516650 525650 169828 640300 464980 532990 519930 430370 389410 TRUE FALSE FALSE 276253.4364 475708.7724 729195.7574 395368.1666 559987.6034 407615.4952 399630.2646 401553.289 467674.8181 291899.2014 0.94640011 1.629702206 2.498108093 1.354468134 1.918428008 1.396425524 1.3690694 1.375657375 1.602179163 1 18.15511074 -6.381069218 7.886069265 1.370445004 1.695325741 0.138561192 0.395818836 0.613495605 37.3574075 0.141235157 0.124339707 4.16E-07 6.381069218 0.324880737 GLFQDEDSCS(ph)DCSYR ddPTM_HeLa_A486_30min_R1 1 GLFQDEDSCSDCSYR 15 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 GLFQDEDS(0.39)CS(0.61)DCSYR 271.45 4.14E-58 153720000 67124 118940 126260 39384 166460 121440 135210 135320 91642 96670 TRUE FALSE FALSE 62418.95423 109514.7612 175151.2534 91687.94236 145581.0346 106457.9675 101379.0279 104510.59 99585.60235 72463.20278 0.861388289 1.511315496 2.417106154 1.265303476 2.009033951 1.469131413 1.3990415 1.442257394 1.374292034 1 16.14496095 -8.015785199 0.722926557 1.007963399 1.619776727 0.15935932 0.392992831 1.36600571 1.640903352 0.389605873 0.152165533 9.64E-09 8.015785199 0.611813328 GLFS(ph)DEEDSEDLFSSQSASK ddPTM_HeLa_A485_30min_R1 4 GLFSDEEDSEDLFSSQSASK 20 0 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 GLFS(0.964)DEEDS(0.036)EDLFSSQSASK;GLFS(0.997)DEEDS(0.003)EDLFSSQSASK;GLFS(0.866)DEEDS(0.134)EDLFSSQSASK;GLFS(0.803)DEEDS(0.197)EDLFSSQSASK ;;; 265.41 3.75E-59 226839000 195786 210164 168148 232740 257490 229230 303965 319280 179187 317190 TRUE FALSE FALSE 239337.9202 234740.8516 230352.9424 245453.9969 231853.3915 241232.1283 239020.3946 240976.0794 215148.1873 238120.3704 1.005113169 0.985807519 0.967380245 1.03079798 0.973681466 1.013068004 1.003779702 1.011992712 0.903527014 1 17.86133152 -7.72823771 24.99999869 0.951763198 0.998312586 0.31035918 0.028124213 181.4870381 136655.5507 0.01755214 0.006633133 1.87E-08 7.72823771 0.046549388 GLFS(ph)DEEDSEDLFSSQSASK ddPTM_HeLa_A486_30min_R1 2 GLFSDEEDSEDLFSSQSASK 20 0 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 GLFS(0.997)DEEDS(0.003)EDLFSSQSASK;GLFS(0.996)DEEDS(0.004)EDLFSSQSASK ; 209.7 8.50E-27 142989000 167430 176746 115088 82950 192224 186313 210779 219892 144116 204366 TRUE FALSE FALSE 155694.0216 162740.0033 159653.1558 193111.7921 168113.4735 163327.5964 158039.8648 169827.3918 156608.0909 153191.4234 1.016336412 1.062331034 1.042180771 1.260591408 1.097407869 1.066166713 1.031649562 1.108595952 1.022303256 1 17.224976 -6.38497601 3.985905967 1.049782313 1.09985996 0.124159275 0.066790205 0.60832885 16.66099465 0.025948266 0.022560569 4.12E-07 6.38497601 0.050077647 GLFS(ph)DEEDSEDLFSSQSASNLK ddPTM_HeLa_A485_30min_R1 1 GLFSDEEDSEDLFSSQSASNLK 22 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 GLFS(0.967)DEEDS(0.033)EDLFSSQSASNLK 120.4 2.22E-05 31343000 11960 12060 11544 17269 16615 16797 25782 25999 15189 26727 TRUE FALSE FALSE 14620.46074 13470.31209 15814.60599 18212.36174 14960.75226 17676.46495 20273.46508 19622.70449 18237.29298 20064.45077 0.728674854 0.671352146 0.788190325 0.907693011 0.745634776 0.880984242 1.010417146 0.977983634 0.908935569 1 14.29235405 -5.589003899 0.463752118 0.995766233 0.645137704 0.719772836 0.060885241 0.914726473 0.344235737 0.055098475 0.155895543 2.58E-06 5.589003899 -0.350628528 GLFS(ph)DEEDSEDLFSSQSASNLK ddPTM_HeLa_A486_30min_R1 1 GLFSDEEDSEDLFSSQSASNLK 22 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 GLFS(0.969)DEEDS(0.031)EDLFSSQSASNLK 132.74 1.04E-06 55416000 49882 54395 37028 16398 53107 54191 61515 65228 43063 61368 TRUE FALSE FALSE 46385.52939 50084.5421 51366.23324 38175.37271 46445.82486 47505.46539 46123.29636 50377.00832 46795.73551 46001.05336 1.008357983 1.088769462 1.116631675 0.829880403 1.009668724 1.032703861 1.002657396 1.095127277 1.017275303 1 15.48937928 -9.653684488 14.11382831 1.000000127 1.022901619 0.007835892 0.075180999 0 0 0.074863066 0.018156961 2.22E-10 9.653684488 0.022901492 GLGDQSASRTS(ph)PGRVDLPGSSTTLTK ddPTM_HeLa_A485_30min_R1 1 GLGDQSASRTSPGRVDLPGSSTTLTK 26 2 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 GLGDQS(0.013)AS(0.013)RT(0.223)S(0.751)PGRVDLPGSSTTLTK 151.64 1.54E-09 781750000 7874.4 36262 21762 7615.8 36786 59787 60219 174950 21800 18668 TRUE FALSE FALSE 9626.033114 40502.52546 29812.66939 8031.83187 33123.45668 62917.35487 47352.71871 132043.2382 26175.06004 14014.41116 0.686866755 2.890062594 2.127286623 0.573112333 2.36352825 4.489475452 3.378858959 9.421961201 1.867724569 1 13.77462351 -6.194559264 3.457312536 4.543558946 1.679357749 0.201765549 2.209536378 0.335469122 7.931568067 0.748306305 0.731560552 6.39E-07 6.194559264 -2.864201198 GLGHPPSS(ph)PLLK ddPTM_HeLa_A485_30min_R1 5 GLGHPPSSPLLK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 GLGHPPS(0.024)S(0.976)PLLK;GLGHPPS(0.05)S(0.95)PLLK;GLGHPPS(0.01)S(0.99)PLLK;GLGHPPS(0.097)S(0.903)PLLK;GLGHPPS(0.019)S(0.981)PLLK ;;;; 140.1 2.70E-06 1543620000 2435490 2840590 2231580 2494660 2915560 2761710 3288280 3361070 2186510 3234950 TRUE FALSE FALSE 2977256.348 3172772.291 3057134.306 2630936.959 2625276.609 2906308.865 2585712.115 2536762.313 2625322.501 2428536.5 1.225946717 1.306454439 1.258838113 1.083342564 1.081011798 1.196732627 1.064720302 1.044564211 1.081030695 1 21.21165574 -4.7769983 0.322503103 1.014731746 1.435513309 0.685725302 0.055112654 3.095777744 0.335961808 0.064185906 0.498191777 1.67E-05 4.7769983 0.420781563 GLGHPPSS(ph)PLLK ddPTM_HeLa_A486_30min_R1 3 GLGHPPSSPLLK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 GLGHPPS(0.022)S(0.978)PLLK;GLGHPPS(0.099)S(0.901)PLLK;GLGHPPS(0.053)S(0.947)PLLK ;; 140.31 2.30E-06 1401170000 2953590 2654850 1668650 734300 2535020 2468150 2852010 2801780 2145130 2987330 TRUE FALSE FALSE 2746558.593 2444470.017 2314795.968 1709487.509 2217054.153 2163654.747 2138406.933 2163875.856 2331071.596 2239283.124 1.226534762 1.091630617 1.033721883 0.763408383 0.990073176 0.966226523 0.954951569 0.966325264 1.040990115 1 21.09460552 -4.590245413 2.115504624 0.953992585 1.22285284 0.57967027 0.071843152 0.269718296 2.086157021 0.019973011 0.106895996 2.57E-05 4.590245413 0.268860254 GLGHPPSS(ph)PLLKK ddPTM_HeLa_A485_30min_R1 3 GLGHPPSSPLLKK 13 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 GLGHPPS(0.12)S(0.88)PLLKK;GLGHPPS(0.133)S(0.867)PLLKK;GLGHPPS(0.014)S(0.986)PLLKK ;; 119.96 5.94E-05 1665530000 1435990 1477330 1018520 1579030 1599670 1799710 2209270 2248230 1185770 1963730 TRUE FALSE FALSE 1755421.021 1650090.892 1395312.932 1665288.411 1440401.238 1893940.033 1737241.416 1696848.067 1423743.162 1474208.251 1.190755119 1.11930651 0.946482922 1.129615446 0.977067682 1.28471675 1.178423344 1.151023315 0.965768006 1 20.49150891 -7.765286983 24.96031335 0.982883933 1.118926201 0.260733865 0.093689323 148.0721407 960511.9237 0.082673401 0.024499616 1.72E-08 7.765286983 0.136042268 GLGIISSNGK(ac)RWK ddPTM_HeLa_A485_30min_R1 1 GLGIISSNGKRWK 13 2 G3V188;B7Z1F5;P10632 G3V188 CYP2C8 Cytochrome P450 2C8 0 1 GLGIISSNGK(1)RWK 74.464 0.022686 43886000 1912.4 2081.7 2233.5 3215.9 7099.4 18409 54678 91100 95430 178650 FALSE TRUE FALSE 2337.806782 2325.136707 3059.764594 3391.576474 6392.558808 19372.86677 42995.59862 68757.58216 114581.9257 134115.8428 0.01743125 0.017336779 0.022814341 0.02528841 0.047664457 0.144448757 0.320585531 0.51267308 0.854350413 1 17.03312014 -7.424724604 0.948905785 1.015925794 0.016706409 0.993798402 0.027761319 0.035473906 0.058523148 0.024365066 0.009421095 3.76E-08 7.424724604 -0.999219385 down GLGK(ac)GGAK ddPTM_HeLa_A485_30min_R1 2 GLGKGGAK 8 1 P62805;Q99525 P62805 HIST1H4A;HIST1H4G Histone H4;Histone H4-like protein type G 0 1 ; GLGK(1)GGAK;GLGK(1)GGAK 139.28 0.0020096 1191970000 932950 1049520 1014880 1154930 1269630 978760 1290740 2355200 1220130 3438600 FALSE TRUE FALSE 1140481.509 1172252.234 1390326.345 1218020.901 1143221.179 1030006.36 1014962.855 1777583.507 1464998.899 2581420.303 0.441803881 0.454111341 0.538589684 0.471841374 0.442865185 0.399007616 0.393180008 0.688606774 0.56751661 1 21.29973363 -8.291787737 0.888778092 0.998256992 0.453953767 0.843032038 0.069415881 0.382184196 0.579362579 0.068700969 0.023289769 5.11E-09 8.291787737 -0.544303225 down GLGK(ac)GGAK ddPTM_HeLa_A486_30min_R1 2 GLGKGGAK 8 1 P62805;Q99525 P62805 HIST1H4A;HIST1H4G Histone H4;Histone H4-like protein type G 0 1 ; GLGK(1)GGAK;GLGK(1)GGAK 125.25 0.0087262 1036570000 1721490 1734280 1211580 545710 1698630 1687870 1775130 1662530 1443080 1661160 FALSE TRUE FALSE 1600822.441 1596849.337 1680736.223 1270440.459 1485571.986 1479637.76 1330973.699 1284008.212 1568167.336 1245194.724 1.285600084 1.282409334 1.349777823 1.020274528 1.193043914 1.188278212 1.068888001 1.031170617 1.259375186 1 20.24793994 -1 0.194047281 1.031979094 2.405534693 0.408437497 0.093550623 52.95436183 0.626891209 0.182313641 21.9262637 0.1 1 1.373555599 GLGK(ac)GGAK(ac)R ddPTM_HeLa_A485_30min_R1 2 GLGKGGAKR 9 2 P62805 P62805 HIST1H4A Histone H4 0 2 ; GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R 142.79 0.00026734 63425000000 6666621.9 13211123 13215409 7668419.3 12414883 8273833 11154299.8 41615100 15282848 43759055 FALSE TRUE FALSE 8149588.942 14756048.91 18104338.73 8087325.629 11178813.66 8707038.102 8771092.525 31408931.48 18349975.41 32850727.91 0.248079402 0.449184839 0.551109211 0.246184062 0.340291201 0.265048559 0.266998422 0.95611067 0.558586569 1 24.969422 -7.256946773 24.94130008 0.818011475 0.344327104 0.719255423 0.142976681 196.4838899 1090813.614 0.068704817 0.037918897 5.53E-08 7.256946773 -0.473684371 GLGK(ac)GGAK(ac)R ddPTM_HeLa_A486_30min_R1 3 GLGKGGAKR 9 2 P62805 P62805 HIST1H4A Histone H4 0 2 ;; GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R 160.63 6.28E-06 38879000000 21938576.3 20911879.5 18330812 6136791.9 21801767 14349382 17862728.9 17162322 14337678.2 15703727.3 FALSE TRUE FALSE 20400795.39 19254746.01 25428993.32 14286761.68 19067186.09 12579101.14 13393285.2 13254835.93 15580479.69 11771411.77 1.733079752 1.635721049 2.160233099 1.213682943 1.619787538 1.068614486 1.137780706 1.126019223 1.323586329 1 23.48878402 -5.742983308 1.299846904 1.145104709 1.804151297 0.614542332 0.219234489 0.287367287 1.018136918 0.083178093 0.120714779 1.81E-06 5.742983308 0.659046588 GLGKPGGQGDAIQLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 GLGKPGGQGDAIQLSPK 17 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 GLGKPGGQGDAIQLS(1)PK;GLGKPGGQGDAIQLS(1)PK ; 167.61 2.54E-12 1180210000 1502860 1477360 934630 2505400 1732310 1725120 2744400 2669900 1247610 3484800 TRUE FALSE FALSE 1837166.022 1650124.401 1280388.53 2642263.658 1559835.134 1815444.616 2158036.52 2015102.839 1497993.883 2616103.493 0.702252807 0.630756545 0.489425794 1.009999667 0.596243665 0.693949846 0.824904873 0.770268777 0.572604978 1 21.31898818 -14 0.303628506 3.494392638 0.68814449 0.286654041 0.139902215 370.0146918 3.406668498 589.1317828 0.136942955 1.00E-14 14 -2.806248148 GLGKPGGQGDAIQLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 GLGKPGGQGDAIQLSPK 17 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 GLGKPGGQGDAIQLS(1)PK 161.2 4.04E-12 632160000 777740 621030 301210 406830 561310 807400 935720 908840 484320 1486100 TRUE FALSE FALSE 723224.4423 571817.321 417846.5787 947120.8 490905.2658 707791.197 701592.959 701916.9718 526301.2476 1113970.887 0.649231008 0.513314421 0.375096498 0.850220424 0.440680516 0.635376746 0.629812652 0.630103515 0.472455119 1 20.0872801 -10.90950949 2.495086635 1.250653494 0.578337571 0.496179874 0.12775936 27993303.35 15079110.09 41105171.94 0.03113692 1.23E-11 10.90950949 -0.672315923 GLGLPGCIPGLLPENS(ph)MDCI ddPTM_HeLa_A485_30min_R1 2 GLGLPGCIPGLLPENSMDCI 20 0 K7ES22;Q9NVP2 K7ES22 ASF1B Histone chaperone ASF1B 1 0 GLGLPGCIPGLLPENS(1)MDCI;GLGLPGCIPGLLPENS(1)MDCI ; 96.103 0.0035822 34673000 115382 104138 158377 122592 211468 103221 147901 127981 135589 192869 TRUE FALSE FALSE 141048.3278 116316.0332 216967.2429 129288.8905 190413.5034 108625.4919 116300.7431 96593.45908 162800.4686 144790.3078 0.974155867 0.803341294 1.498492863 0.892938847 1.315098409 0.750226266 0.803235692 0.667126554 1.12438789 1 17.14360551 -6.28168706 24.98545288 0.844080712 1.091491959 0.203033802 0.222832722 1244.556661 1535767.007 0.076306354 0.067371898 5.23E-07 6.28168706 0.247411247 GLGLPGCIPGLLPENS(ph)MDCI ddPTM_HeLa_A486_30min_R1 4 GLGLPGCIPGLLPENSMDCI 20 0 K7ES22;Q9NVP2 K7ES22 ASF1B Histone chaperone ASF1B 1 0 GLGLPGCIPGLLPENS(1)MDCI;GLGLPGCIPGLLPENS(1)MDCI;GLGLPGCIPGLLPENS(1)MDCI;GLGLPGCIPGLLPENS(1)MDCI ;;; 124.86 6.68E-06 96616000 133540 251940 245696 93903 316765 238683 266231 270974 208077 220393 TRUE FALSE FALSE 124179.5356 231975.3569 340836.0712 218610.9296 277033.38 209236.7182 199617.1879 209279.1355 226113.2819 165205.1583 0.751668634 1.404165338 2.063107924 1.323269393 1.676905145 1.266526544 1.20829876 1.2667833 1.36868173 1 17.33389921 -6.483930593 20.3384019 1.233778414 1.469566851 0.10612452 0.317950958 144.444772 75427.21692 0.114867504 0.101241448 3.28E-07 6.483930593 0.235788437 GLGMTLSYLFR ddPTM_HeLa_A485_30min_R1 2 GLGMTLSYLFR 11 0 E9PN51;F8W9K7;E9PPW7;O00217;E9PKH6 E9PN51 NDUFS8 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial" 0 0 ; ; 123.86 0.0031715 13256800 7554.1 7259.8 7089.3 7991.8 9642.8 7143.3 9767.3 7662.3 7847.2 13267.3 FALSE FALSE TRUE 9234.483484 8108.770458 9711.92708 8428.371798 8682.728974 7517.312142 7680.436563 5783.108911 9422.061061 9960.006277 0.927156392 0.814133067 0.975092466 0.846221535 0.871759388 0.754749739 0.771127683 0.580633059 0.94598947 1 13.28193094 -6.152256426 4.38236203 0.782021976 0.887867021 0.074509339 0.115010851 0.432861936 13.80936919 0.037129099 0.037158995 7.04E-07 6.152256426 0.105845045 GLGPPS(ph)PPAPPR ddPTM_HeLa_A485_30min_R1 7 GLGPPSPPAPPR 12 0 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR ;;;;;; 132.5 2.35E-05 7569160000 1179124 1494250 1766950 1409930 1811850 1379900 1648710 1604270 1510960 1877620 TRUE FALSE FALSE 1441416.066 1668989.539 2420618.334 1486950.906 1631455.852 1452149.43 1296449.64 1210820.267 1814195.813 1409563.889 1.022597186 1.184046748 1.717281744 1.05490139 1.157418876 1.030211856 0.919752308 0.859003467 1.287061783 1 20.42681744 -5.477974943 24.95399656 1.035528387 1.310667319 0.273405715 0.197062042 564.1041664 313484.14 0.056491186 0.083785491 3.33E-06 5.477974943 0.275138932 GLGPPS(ph)PPAPPR ddPTM_HeLa_A486_30min_R1 6 GLGPPSPPAPPR 12 0 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR ;;;;; 177.64 1.49E-11 7973970000 1091050 1330900 1211400 459318 1476650 1233970 1331280 1404710 1154660 1293210 TRUE FALSE FALSE 1014573.029 1225434.637 1680486.522 1069315.517 1291434.788 1081735.327 998179.6632 1084888.198 1254746.858 969381.7986 1.046618609 1.26414034 1.73356517 1.103090153 1.332225125 1.115902247 1.029707453 1.119154702 1.294378397 1 19.88670547 -6.266647149 22.71184506 1.114143122 1.307761886 0.195099761 0.186163117 212.0441172 924748.9931 0.065822591 0.059922423 5.41E-07 6.266647149 0.193618764 GLGPPS(ph)PPAPPRGPAGEAGAS(ph)PPVRR ddPTM_HeLa_A486_30min_R1 1 GLGPPSPPAPPRGPAGEAGASPPVRR 26 2 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 2 0 GLGPPS(1)PPAPPRGPAGEAGAS(1)PPVRR 54.926 0.021191 749110000 175910 160650 203130 62967 289430 141300 227800 241910 143590 232570 TRUE FALSE FALSE 163579.6174 147919.5089 281787.376 146590.3582 253126.9906 123867.8426 170802.0306 186832.3739 156036.4968 174332.9582 0.938317224 0.848488493 1.61637466 0.840864284 1.451974389 0.710524527 0.979746069 1.071698523 0.895048753 1 17.41148582 -6.279036292 24.9763522 0.938906175 1.132988075 0.148412579 0.24833522 1771.317823 2514129.826 0.085116755 0.075238126 5.26E-07 6.279036292 0.194081901 GLGPPSPPAPPRGPAGEAGAS(ph)PPVRR ddPTM_HeLa_A485_30min_R1 2 GLGPPSPPAPPRGPAGEAGASPPVRR 26 2 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GLGPPS(0.094)PPAPPRGPAGEAGAS(0.906)PPVRR;GLGPPSPPAPPRGPAGEAGAS(1)PPVRR ; 131.81 2.51E-06 1092900000 155502 438820 292110 79317 319460 410430 412080 803150 235810 125177 TRUE FALSE FALSE 190092.8834 490136.1818 400173.6447 83649.88687 287653.4407 431919.4802 324035.7416 606176.2032 283134.904 93972.67761 2.022852687 5.215730723 4.258404197 0.890151148 3.061032717 4.596224042 3.448191005 6.450557956 3.012949202 1 16.51995374 -6.238450517 23.2550239 4.02640727 3.150488765 0.013456248 1.691246974 1089.458523 1102070.493 0.554497423 0.554005312 5.77E-07 6.238450517 -0.875918505 GLGPS(ph)PAGDGPSGSGK ddPTM_HeLa_A485_30min_R1 4 GLGPSPAGDGPSGSGK 16 0 Q92934;F5GYS3;A8MXU7 Q92934 BAD Bcl2-associated agonist of cell death 1 0 GLGPS(0.993)PAGDGPS(0.007)GSGK;GLGPS(0.999)PAGDGPS(0.001)GSGK;GLGPS(1)PAGDGPSGSGK;GLGPS(1)PAGDGPSGSGK ;;; 144.15 8.35E-08 437013000 856930 920600 808380 1042190 1198860 979410 1230900 1356650 926850 1350540 TRUE FALSE FALSE 1047551.122 1028256.162 1107433.401 1099122.201 1079497.289 1030690.393 967908.1595 1023929.46 1112860.293 1013875.233 1.033215023 1.014184121 1.092277793 1.084080334 1.064723996 1.016585039 0.954662002 1.009916632 1.097630416 1 19.9514487 -6.288427076 7.73184202 1.012453255 1.058672795 0.221966137 0.039000554 0.3786865 92.71414526 0.014550633 0.013037667 5.15E-07 6.288427076 0.046219541 GLGPS(ph)PAGDGPSGSGK ddPTM_HeLa_A486_30min_R1 1 GLGPSPAGDGPSGSGK 16 0 Q92934;F5GYS3;A8MXU7 Q92934 BAD Bcl2-associated agonist of cell death 1 0 GLGPS(1)PAGDGPSGSGK 176.08 1.06E-12 115730000 272500 302420 197450 110080 332270 301480 331330 347570 217920 322880 TRUE FALSE FALSE 253399.1572 278455.1378 273907.9279 256271.8031 290593.5983 264286.4628 248427.7295 268435.8984 236809.4811 242028.7464 1.046979588 1.150504401 1.131716509 1.058848616 1.200657371 1.091963111 1.026438939 1.109107502 0.978435349 1 17.88481888 -7.39774513 0.961624729 0.99443496 1.116567116 0.413566819 0.050977104 0.53807643 0.903192129 0.045416419 0.017623864 4.00E-08 7.39774513 0.122132156 GLGS(ph)SPDLELLLR ddPTM_HeLa_A485_30min_R1 3 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 0 GLGS(0.986)S(0.014)PDLELLLR;GLGS(0.993)S(0.007)PDLELLLR;GLGS(0.5)S(0.5)PDLELLLR ;; 187.47 2.64E-17 194698000 136128 186262 176219 153237 179883 168779 208566 207859 162989 237820 TRUE FALSE FALSE 166409.204 208043.7206 241409.7412 161607.9493 161973.2169 177616.0075 164004.1703 156881.2543 195699.3973 178535.8508 0.932077245 1.165277 1.35216395 0.905184861 0.907230768 0.994847851 0.918606373 0.878710095 1.096135014 1 17.44585428 -5.297267912 24.99933558 0.950064145 1.151383308 0.383996839 0.111519865 562.5050774 392486.3451 0.031462236 0.046668028 5.04E-06 5.297267912 0.201319162 GLGS(ph)SPDLELLLR ddPTM_HeLa_A486_30min_R1 4 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 0 GLGS(0.778)S(0.222)PDLELLLR;GLGS(0.5)S(0.5)PDLELLLR;GLGS(0.5)S(0.5)PDLELLLR;GLGS(0.5)S(0.5)PDLELLLR ;;; 203.74 1.49E-21 295759000 352706 362012 365243 129421.6 448655 336663 360363 371701 380588 420375 TRUE FALSE FALSE 327983.1308 333324.8507 506674.8711 301300.0254 392380.5064 295128.942 270196.3659 287072.7965 413577.6743 315110.3638 1.040851614 1.057803516 1.607928299 0.956173011 1.245216126 0.936589132 0.857465818 0.911023024 1.312485154 1 18.26549768 -6.262693413 24.97442017 0.988823636 1.185879031 0.162436817 0.200690203 201.2615745 4008142.218 0.069056451 0.064281972 5.46E-07 6.262693413 0.197055395 GLGSS(ph)PDLELLLR ddPTM_HeLa_A485_30min_R1 3 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 0 GLGS(0.01)S(0.99)PDLELLLR;GLGS(0.096)S(0.904)PDLELLLR;GLGS(0.001)S(0.999)PDLELLLR ;; 237.87 7.36E-35 275976000 206072 269763 250402 231414 255246 253002 314002 323603 244457 378147 TRUE FALSE FALSE 251912.0055 301309.4362 343036.1199 244055.5608 229832.812 266248.7935 246912.9075 244238.8569 293517.2776 283881.9122 0.88738308 1.061390047 1.208376107 0.859708035 0.809607101 0.937885727 0.8697733 0.860353712 1.033941456 1 18.1149314 -5.295217039 24.99075787 0.899642815 1.053283882 0.308698126 0.096617627 675.6306795 499871.0922 0.027278303 0.040463267 5.07E-06 5.295217039 0.153641067 GLGSS(ph)PDLELLLR ddPTM_HeLa_A486_30min_R1 2 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 0 GLGS(0.008)S(0.992)PDLELLLR;GLGS(0.195)S(0.805)PDLELLLR ; 166.45 6.55E-12 55657000 122608 139127 127831 86735 162004 143566 148846 152043 142895 184987 TRUE FALSE FALSE 114013.8123 128102.0698 177330.5866 201923.4633 141683.9477 125854.2866 111603.1565 117426.128 155281.2537 138665.0511 0.822224572 0.923823767 1.278841245 1.456195788 1.021771142 0.907613602 0.804839832 0.846832904 1.11982978 1 17.08124469 -5.99793369 24.99880509 0.923244742 1.132742986 0.183273196 0.181844772 113.3682854 1371527.46 0.062228859 0.070111772 1.00E-06 5.99793369 0.209498244 GLGTDEDS(ph)LIEIICSR ddPTM_HeLa_A485_30min_R1 5 GLGTDEDSLIEIICSR 16 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR ;;;; 406.87 2.63E-152 1605970000 399316 494412 560131 438608 720579 461091 590365 639534 537794 563240 TRUE FALSE FALSE 488142.4666 552229.1826 767346.7659 462568.0444 648835.6247 485233.0118 464228.6949 482687.2837 645724.3229 422834.6337 1.154452421 1.306016912 1.814768008 1.093969149 1.534490255 1.147571587 1.097896572 1.141550964 1.527132055 1 18.68973402 -6.283866334 24.45601235 1.186368799 1.384769143 0.160000832 0.22656609 1193.952976 1301969.783 0.078751475 0.069506796 5.20E-07 6.283866334 0.198400344 GLGTDEDS(ph)LIEIICSR ddPTM_HeLa_A486_30min_R1 7 GLGTDEDSLIEIICSR 16 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR ;;;;;; 414.17 1.04E-152 1944526000 711552 942120 924705 406285.3 1161340 883445 1049350 1070536 788063 914822 TRUE FALSE FALSE 661675.8793 867462.9801 1282775.54 945852.7109 1015673.908 774454.5381 786791.5311 826798.3224 856372.9354 685744.6167 0.96490131 1.264994225 1.870631587 1.379307526 1.481125602 1.129362913 1.147353566 1.205694222 1.248821959 1 19.38731187 -6.267416316 23.47148535 1.159171587 1.410989675 0.238675884 0.217731116 335.3639819 1316970.555 0.079573821 0.072106887 5.40E-07 6.267416316 0.251818088 GLGTDEDSLIEIICSR ddPTM_HeLa_A485_30min_R1 3 GLGTDEDSLIEIICSR 16 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;; ;; 308.12 3.29E-82 146644000 63810.3 76821.2 66836.6 66504.9 90911 78180.4 104326.2 92068.3 80109.1 114168.2 FALSE FALSE TRUE 78004.68109 85804.77108 91562.23964 70137.89429 81859.58163 82273.80485 82036.0551 69488.40507 96186.26157 85708.16885 0.910119562 1.001127107 1.068302367 0.818333832 0.955096611 0.95992956 0.957155615 0.810755917 1.122253139 1 16.38714509 -7.783597966 24.99993156 1.061126539 0.940080182 0.2924627 0.078100113 356.7366891 402469.0084 0.073880021 0.019137122 1.65E-08 7.783597966 -0.121046357 GLGTDEDSLIEIICSR ddPTM_HeLa_A486_30min_R1 2 GLGTDEDSLIEIICSR 16 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 187.44 3.18E-16 121003000 79670 120535 116407 42531 193512 113727 133593 144147 124978 123767 FALSE FALSE TRUE 74085.54442 110983.3676 161482.9079 99014.3174 169239.9205 99696.51903 100166.6184 111327.8748 135811.1937 92774.93761 0.798551272 1.196264535 1.74058762 1.067252859 1.824198699 1.074606155 1.07967325 1.1999779 1.463878038 1 16.50144751 GLGTDEDTLIEILAS(ph)R ddPTM_HeLa_A486_30min_R1 1 GLGTDEDTLIEILASR 16 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 1 0 GLGTDEDTLIEILAS(1)R 63.709 0.0093229 0 1369.8 1105.3 0 0 1095.5 0 731.29 1095.9 0 913.81 TRUE FALSE FALSE 1273.784094 1017.712003 0 0 958.0921749 0 548.3135072 846.3874933 0 684.9860281 1.859576753 1.485741257 0 0 1.398703237 0 0.800474002 1.235627383 0 1 9.419930751 -4.610095322 6.027367168 0.564714751 1.769746102 0.434038245 0.51774314 0.168130181 9.016876986 0.130162087 0.356357758 2.45E-05 4.610095322 1.205031351 GLGTDEDTLIEILASR ddPTM_HeLa_A485_30min_R1 2 GLGTDEDTLIEILASR 16 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 0 ; ; 296.17 2.39E-67 30788000 25330 34622 39337 25773 40784 35220 38305 45969 32105 36748 FALSE FALSE TRUE 30964.57111 38670.74173 53889.39325 27180.91373 36723.40176 37064.06474 30120.82383 34695.03067 38548.17902 27587.3999 1.122417162 1.401753767 1.953406028 0.985265514 1.331165746 1.343514245 1.091832646 1.257640474 1.397311061 1 14.75172187 -5.311393579 24.99999921 1.218514349 1.483452706 0.246657561 0.231925499 548.5113373 274505.8549 0.065273054 0.096815724 4.88E-06 5.311393579 0.264938357 GLGTDEESILTLLT(ph)SR ddPTM_HeLa_A485_30min_R1 1 GLGTDEESILTLLTSR 16 0 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 1 0 GLGTDEESILT(0.001)LLT(0.499)S(0.499)R 98.439 0.0029022 10586000 13334 23579 24273 18389 25916 23502 22385 26979 16994 26451 TRUE FALSE FALSE 16300.1023 26336.35894 33252.59278 19393.54451 23335.71204 24732.52838 17602.26188 20362.35795 20404.53992 19857.25249 0.820863929 1.326284135 1.674581758 0.976647928 1.175173255 1.245516135 0.886439949 1.025436825 1.027561085 1 14.2773784 -6.749993534 24.99471176 0.986979197 1.218631329 0.199819782 0.212666359 355.4175779 776139.6554 0.084121092 0.06457679 1.78E-07 6.749993534 0.231652132 GLGTDEESILTLLTSR ddPTM_HeLa_A485_30min_R1 1 GLGTDEESILTLLTSR 16 0 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 0 282.05 2.67E-54 26041000 19805 28971 34599 22199 35093 30000 33330 36673 28837 33471 FALSE FALSE TRUE 24210.55392 32358.90644 47398.60988 23411.67516 31599.0177 31570.75361 26208.77322 27678.88925 34624.32139 25127.29569 0.963516099 1.287799007 1.88633948 0.931722834 1.257557442 1.256432606 1.043039949 1.101546684 1.377956539 1 14.61696779 GLGTDEESILTLLTSR ddPTM_HeLa_A486_30min_R1 2 GLGTDEESILTLLTSR 16 0 P08758;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 125.82 5.18E-05 31963700 27438.6 27088.9 19650.3 14663.7 41357.1 32746.3 46257 45262.1 25905.8 38019.2 FALSE FALSE TRUE 25515.29583 24942.27691 27259.42241 34137.83466 36169.70688 28706.39445 34683.00934 34956.90789 28151.3356 28498.94486 0.895306685 0.875200013 0.956506374 1.197863108 1.26915951 1.007279202 1.216992752 1.226603584 0.987802732 1 14.79862089 -5.11605823 4.1968189 1.14260916 0.890856144 0.52096928 0.097544348 0.166532554 4.896255415 0.026374316 0.048483057 7.65E-06 5.11605823 -0.251753016 GLGVEIAK ddPTM_HeLa_A485_30min_R1 1 GLGVEIAK 8 0 P22314;Q5JRR9;P22314-2;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 109.01 0.012918 34187000 41650 53967 68715 38764 64146 59840 66535 74405 60123 61923 FALSE FALSE TRUE 50914.89881 60277.9712 94135.53797 40881.57916 57759.39901 62973.12987 52319.25371 56157.05709 72189.13462 46486.73571 1.095256486 1.296670336 2.024997809 0.879424604 1.242492038 1.354647275 1.125466284 1.20802324 1.552897478 1 15.5045315 GLGVEIAK ddPTM_HeLa_A486_30min_R1 1 GLGVEIAK 8 0 P22314;Q5JRR9;P22314-2;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 121.99 0.0047228 20534000 29384 45898 44926 18033 55027 38514 42692 46177 42416 44539 FALSE FALSE TRUE 27324.33334 42260.87532 62322.55036 41981.73534 48125.00055 33762.53426 32010.01005 35663.50514 46092.65303 33386.1445 0.818433328 1.265820776 1.866719003 1.257459823 1.441466251 1.011273831 0.958781271 1.068212747 1.38059227 1 15.02696188 -6.264060387 24.79328531 1.080223393 1.352205399 0.177531504 0.262744585 366.8229977 3469926.241 0.094238798 0.086878311 5.44E-07 6.264060387 0.271982006 GLGVHLSFVR ddPTM_HeLa_A485_30min_R1 1 GLGVHLSFVR 10 0 Q8N6T3;Q8N6T3-2;E5RHC5;Q8N6T3-3;E5RIU2;F8VWB3;E5RGL6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 0 0 123.88 0.0011199 16022000 7701.1 13248 16289 4972.1 15203 12317 12521 13904 15439 11649 FALSE FALSE TRUE 9414.183127 14797.23836 22314.97894 5243.713233 13689.33594 12961.89907 9845.786063 10494.0222 18537.46569 8745.118684 1.076507188 1.692056894 2.551706815 0.599616017 1.5653688 1.482186754 1.125860771 1.199986253 2.119750041 1 13.09426225 -5.266712464 24.98761107 1.31882123 1.765286938 0.158319805 0.499745573 855.4105509 4053543.167 0.138571718 0.212553316 5.41E-06 5.266712464 0.446465707 GLHQLGLIHLAIHYYQK ddPTM_HeLa_A486_30min_R1 1 GLHQLGLIHLAIHYYQK 17 0 Q9Y5Q9 Q9Y5Q9 GTF3C3 General transcription factor 3C polypeptide 3 0 0 81.311 0.0038092 3969200 6865.8 4254.7 4251.9 3956.4 6483.3 4421.8 4800.7 4501.4 3352 5206.9 FALSE FALSE TRUE 6384.542875 3917.542077 5898.34955 9210.699145 5670.10406 3876.283274 3599.514083 3476.529485 3642.554059 3903.058349 1.63577951 1.003710866 1.51121224 2.359867141 1.452733614 0.993139976 0.922229124 0.890719322 0.933256368 1 11.93038932 -6.22553331 4.170321734 0.934288894 1.607757823 0.524785904 0.309200987 0.197152362 7.808997828 0.116525537 0.112619011 5.95E-07 6.22553331 0.673468929 GLHVVEVTYDDVPIPNS(ph)PFK ddPTM_HeLa_A485_30min_R1 2 GLHVVEVTYDDVPIPNSPFK 20 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 GLHVVEVTYDDVPIPNS(1)PFK;GLHVVEVTYDDVPIPNS(1)PFK ; 190.88 1.89E-19 770160000 736990 680040 594050 1061350 941240 736320 985100 900180 695960 1355480 TRUE FALSE FALSE 900930.8829 759564.7624 813813.8155 1119328.863 847526.8407 774872.5766 774625.3375 679409.4436 835632.7883 1017583.782 0.885362856 0.746439533 0.799751166 1.099986933 0.832881632 0.761482829 0.761239862 0.667669292 0.821193108 1 19.95671615 -6.001819365 24.99329512 0.78100159 0.879605021 0.081971921 0.116577187 151.4186572 2080148.587 0.037019868 0.041368205 9.96E-07 6.001819365 0.098603431 GLHVVEVTYDDVPIPNS(ph)PFK ddPTM_HeLa_A486_30min_R1 2 GLHVVEVTYDDVPIPNSPFK 20 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 GLHVVEVTYDDVPIPNS(1)PFK;GLHVVEVTYDDVPIPNS(1)PFK ; 198.98 2.44E-26 624750000 1032500 1028270 610360 633500 966370 1132690 1425800 1301420 763800 1427900 TRUE FALSE FALSE 960127.0818 946786.1403 846707.738 1474820.015 845158.8636 992950.2241 1069049.759 1005115.076 830006.799 1070344.546 0.897026182 0.884562026 0.791060917 1.377892774 0.789613837 0.927692142 0.998790309 0.939057502 0.775457587 1 20.02964385 -9.599265119 13.97230263 1.000015168 0.936827333 0.014414073 0.164846052 0 0 0.156118886 0.037864392 2.52E-10 9.599265119 -0.063187835 GLIAAICAGPTALLAHEIGFGSK ddPTM_HeLa_A485_30min_R1 2 GLIAAICAGPTALLAHEIGFGSK 23 0 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 296.22 3.64E-78 65248000 100946 116934 106895 110716 140055 122425 152022 161375 94580 153405 FALSE FALSE TRUE 123401.0894 130608.4141 146439.9088 116764.1347 126110.6324 128834.9837 119541.2578 121797.5282 113561.3385 115163.9567 1.071525267 1.13410843 1.271577609 1.013894782 1.095052967 1.11870925 1.038009297 1.057601108 0.986084029 1 16.81332974 -6.821184431 0.612717091 0.992266767 1.140242608 0.381774919 0.062538856 0.86411563 0.656887754 0.058105303 0.040681602 1.51E-07 6.821184431 0.147975841 GLIAAICAGPTALLAHEIGFGSK ddPTM_HeLa_A486_30min_R1 2 GLIAAICAGPTALLAHEIGFGSK 23 0 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 317.99 2.92E-93 69737000 121184 136664 103469 35696 139907 129258 150675 141844 120188 147990 FALSE FALSE TRUE 112689.6274 125834.2469 143534.9678 83102.09198 122358.5595 113311.4622 112974.5213 109549.2176 130605.9926 110932.3407 1.015841067 1.134333289 1.293896503 0.749124119 1.103001691 1.021446599 1.018409244 0.987531832 1.177348208 1 16.7593205 -5.215675079 24.9999962 1.012539915 1.146654447 0.220765022 0.120238827 687.4111551 375516.0061 0.031737977 0.054971411 6.09E-06 5.215675079 0.134114533 GLIVYCVTS(ph)PK ddPTM_HeLa_A485_30min_R1 2 GLIVYCVTSPK 11 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 GLIVYCVT(0.005)S(0.995)PK;GLIVYCVT(0.02)S(0.98)PK ; 139.32 9.08E-06 582680000 1615400 1577830 1291610 2436000 2328000 1674380 2405200 2478400 1428410 3132700 TRUE FALSE FALSE 1974740.157 1762343.493 1769430.287 2569072.512 2096216.146 1762047.948 1891309.371 1870568.514 1715078.785 2351775.543 0.83968054 0.749367217 0.752380597 1.092396985 0.891333423 0.749241548 0.804204881 0.795385648 0.72926976 1 21.16531894 -9.056927653 14.35025548 1.000000018 0.824826238 0.214919678 0.10164471 0 0 0.1048779 0.025436627 8.77E-10 9.056927653 -0.17517378 GLIVYCVTS(ph)PK ddPTM_HeLa_A486_30min_R1 2 GLIVYCVTSPK 11 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 GLIVYCVT(0.003)S(0.997)PK;GLIVYCVT(0.011)S(0.989)PK ; 175.57 1.24E-08 726530000 2102080 2244280 1207120 1321860 1970400 2185100 2933300 2559900 1569450 3448000 TRUE FALSE FALSE 1954735.047 2066435.079 1674549.192 3077356.883 1723254.059 1915524.578 2199357.315 1977066.652 1705491.19 2584598.357 0.75630128 0.79951884 0.647895325 1.190651876 0.666739594 0.741130463 0.850947424 0.764941542 0.65986701 1 21.30150867 GLKEGMNPS(ph)YDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A485_30min_R1 1 GLKEGMNPSYDEYADSDEDQHDAYLER 27 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 2 0 GLKEGMNPS(1)YDEYADS(1)DEDQHDAYLER 153.57 6.58E-09 212380000 28766 45185 32555 39546 60227 50852 66763 81219 40955 44643 TRUE FALSE FALSE 35164.89746 50468.99269 44598.44923 41706.29784 54230.58841 53514.53209 52498.53965 61299.9129 49174.29284 33514.32169 1.049249863 1.505893306 1.330728088 1.244432104 1.618131762 1.59676608 1.566450908 1.829066196 1.467262065 1 15.03249011 -5.761528928 24.99999999 1.561265727 1.301966512 0.179966685 0.225761654 3.470649966 968957.7286 0.064618931 0.078058221 1.73E-06 5.761528928 -0.259299215 GLKEGMNPS(ph)YDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A486_30min_R1 1 GLKEGMNPSYDEYADSDEDQHDAYLER 27 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 2 0 GLKEGMNPS(0.999)Y(0.001)DEY(0.004)ADS(0.994)DEDQHDAY(0.001)LER 65.758 0.036061 123970000 46662 55850 53777 16579 81936 46241 39618 53307 46555 35797 TRUE FALSE FALSE 43391.23476 51424.2426 74600.8946 38596.74986 71658.82286 40536.25556 29705.15736 41170.15978 50590.42488 26833.1982 1.617072793 1.916441052 2.780171564 1.438395437 2.670528586 1.510675517 1.107030073 1.534299396 1.885366944 1 14.7117314 -6.491230583 23.67890626 1.409435275 2.079202256 0.367126691 0.446419218 386.788554 289392.4962 0.152412227 0.134241707 3.23E-07 6.491230583 0.669766982 GLKEGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A485_30min_R1 7 GLKEGMNPSYDEYADSDEDQHDAYLER 27 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEY(0.001)ADS(0.999)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER ;;;;;; 332.34 9.99E-127 13684260000 1525409 3895420 2579290 998154 4118020 4682090 5462710 10435900 2501600 1662809 TRUE FALSE FALSE 1864730.969 4350955.483 3533476.704 1052680.626 3708015.47 4927236.993 4295557.382 7876479.162 3003648.174 1248301.318 1.493814789 3.485500993 2.830628033 0.843290486 2.970449054 3.947153561 3.441122204 6.309757947 2.406188418 1 20.25153479 -6.000851143 24.9857823 3.721175078 2.2555982 0.129780477 1.427672515 53.28846237 1564398.058 0.433121966 0.485242223 9.98E-07 6.000851143 -1.465576878 GLKEGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_A486_30min_R1 9 GLKEGMNPSYDEYADSDEDQHDAYLER 27 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER ;;;;;;;; 263.16 1.60E-63 7767460000 3252120 2279450 2211220 1257842 4678210 2166860 3585950 4408810 1549077 3371870 TRUE FALSE FALSE 3024163.182 2098818.08 3067463.603 2928319.744 4091425.279 1899534.844 2688707.382 3405020.207 1683352.242 2527531.805 1.196488676 0.830382461 1.213620179 1.1585689 1.618743341 0.751537465 1.063767972 1.347172051 0.666006354 1 21.26929782 GLKPSCTIIPLMK(ac)K ddPTM_HeLa_A485_30min_R1 2 GLKPSCTIIPLMKK 14 2 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; GLKPSCTIIPLMK(1)K;GLKPSCTIIPLMK(1)K 130.72 0.00035427 107081000 329650 382000 310130 329830 416170 472230 500510 554920 383290 530570 FALSE TRUE FALSE 402979.5052 426671.577 424859.9926 347847.7777 374734.6535 496955.2326 393571.9497 418824.9999 460212.7873 398308.6634 1.011726689 1.071208377 1.066660185 0.873312106 0.94081472 1.247663629 0.988107932 1.051508637 1.155417468 1 18.60352733 GLKPSCTIIPLMK(ac)K ddPTM_HeLa_A486_30min_R1 1 GLKPSCTIIPLMKK 14 2 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 GLKPSCTIIPLMK(1)K 92.063 0.033884 49504000 120220 128480 81681 38734 122400 120050 123220 123780 109210 145380 FALSE TRUE FALSE 111793.1988 118298.7769 113310.0707 90174.70951 107047.4507 105239.4516 92389.05271 95597.9961 118676.4107 108975.9017 1.025852478 1.085549878 1.039771811 0.827473855 0.982303876 0.96571306 0.847793423 0.87723978 1.089015175 1 16.73364962 -5.033856518 22.83640835 0.934958146 1.05744112 0.309481778 0.074445557 226.0554513 152475.8613 0.019852912 0.034429134 9.25E-06 5.033856518 0.122482974 GLLAQGLRPES(ph)PPPAGPLLNGAPAGES(ph)PQPK ddPTM_HeLa_A485_30min_R1 7 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK ;;;;;; 243.99 1.72E-50 5681550000 1788320 2000692 1714939 2383615 2501507 2233758 3015327 3210220 1859245 3416810 TRUE FALSE FALSE 2186125.614 2234655.526 2349366.301 2513825.852 2252448.18 2350714.115 2371077.753 2422908.512 2232378.417 2565062.149 0.852270038 0.871189623 0.915910089 0.980025319 0.878126162 0.91643554 0.924374388 0.944580821 0.870301883 1 21.29056235 -11.28455339 0.011938483 1.961686036 1.92E-06 0.367064213 0.037000586 6504.580989 9.988758158 911.3415284 737.304812 5.19E-12 11.28455339 -1.961684118 GLLAQGLRPES(ph)PPPAGPLLNGAPAGES(ph)PQPK ddPTM_HeLa_A486_30min_R1 6 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK ;;;;; 228.54 3.41E-39 7526350000 2482913 2491667 1637431 1142751 2598482 2504203 3071002 3042882 2051182 3549452 TRUE FALSE FALSE 2308873.62 2294218.232 2271488.135 2660382.079 2272556.158 2195259.895 2302604.818 2350084.194 2228980.107 2660646.116 0.867786816 0.862278609 0.853735535 0.999900762 0.85413695 0.825085261 0.865430695 0.88327575 0.837758954 1 21.3433452 -10.45116198 4.801689525 1.00029339 0.873294458 0.415476328 0.04547391 0.000147508 1.69E-05 0.045473547 0.011003592 3.54E-11 10.45116198 -0.126998933 GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK ddPTM_HeLa_A485_30min_R1 4 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(0.964)PPPAGPLLNGAPAGES(0.036)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK ;;; 231.19 7.64E-40 3920460000 1356720 1588120 1383650 1676860 1917840 1773580 2203530 2227640 1588780 2423660 TRUE FALSE FALSE 1658517.683 1773836.819 1895519.713 1768462.616 1726893.116 1866441.906 1732727.814 1681307.797 1907633.573 1819486.166 0.911530802 0.974910858 1.041788472 0.971957165 0.94911033 1.025807143 0.952317114 0.924056378 1.048446319 1 20.79509965 GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK ddPTM_HeLa_A486_30min_R1 5 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK ;;;; 174.66 3.30E-15 13502380000 1224343 1320856 919249 583164 1450640 1238370 1582660 1571635 1054369 1601283 TRUE FALSE FALSE 1138522.878 1216186.56 1275206.831 1357635.263 1268687.205 1085592.5 1186661.728 1213808.019 1145762.554 1200311.314 0.948522991 1.01322594 1.062396743 1.131069288 1.05696513 0.904425783 0.988628295 1.011244337 0.95455449 1 20.1949772 -6.222451168 24.7530386 0.973526925 1.046846254 0.324764348 0.050716785 620.2661749 393797.9831 0.018023938 0.018023644 5.99E-07 6.222451168 0.073319329 GLLAQGLRPESPPPAGPLLNGAPAGES(ph)PQPK ddPTM_HeLa_A485_30min_R1 1 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 GLLAQGLRPES(0.005)PPPAGPLLNGAPAGES(0.995)PQPK 204.91 1.88E-29 11960000000 147110 181740 146290 178510 201920 188060 250600 261490 168160 252090 TRUE FALSE FALSE 179834.112 202992.9121 200408.7586 188261.5493 181816.1358 197906.5308 197057.2628 197359.1675 201908.1695 189248.6024 0.950253316 1.072625687 1.058970878 0.994784357 0.960726439 1.045748969 1.04126139 1.042856671 1.066893848 1 17.52992312 GLLAQGLRPESPPPAGPLLNGAPAGES(ph)PQPK ddPTM_HeLa_A486_30min_R1 1 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 GLLAQGLRPES(0.006)PPPAGPLLNGAPAGES(0.994)PQPK 240.3 1.09E-50 12310000000 820100 772840 629160 371060 845850 920230 1016200 972360 629210 1157300 TRUE FALSE FALSE 762615.225 711597.3438 872787.6015 863846.4323 739755.6058 806701.3788 761936.0117 750974.8545 683750.4294 867504.5472 0.879090752 0.820280823 1.006089944 0.995783175 0.852739744 0.92991026 0.878307802 0.865672528 0.788180802 1 19.72651179 -6.867536277 5.710551963 0.87064385 0.914752218 0.031621548 0.072631974 0.637369199 29.85677851 0.031438081 0.021075386 1.36E-07 6.867536277 0.044108368 GLLASDLNTDGDMRVT(ph)PEPGAGPTQGLLR ddPTM_HeLa_A485_30min_R1 4 GLLASDLNTDGDMRVTPEPGAGPTQGLLR 29 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 GLLASDLNTDGDMRVT(0.999)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR ;;; 168.09 4.90E-14 1748812000 476840 742303 808410 518354 830419 656026 800144 879070 675101 679383 TRUE FALSE FALSE 582911.4129 829108.8787 1107474.5 546670.3665 747739.5686 690374.507 629186.6978 663476.7042 810587.5783 510025.3212 1.14290681 1.625622972 2.171410818 1.071849463 1.466083227 1.353608298 1.233638158 1.300870127 1.5893085 1 18.96020935 -5.306859293 24.99963871 1.308344767 1.644547048 0.252325489 0.281442964 616.2142166 339170.0675 0.078822689 0.11691338 4.93E-06 5.306859293 0.336202282 GLLASDLNTDGDMRVT(ph)PEPGAGPTQGLLR ddPTM_HeLa_A486_30min_R1 7 GLLASDLNTDGDMRVTPEPGAGPTQGLLR 29 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR;GLLASDLNT(0.002)DGDMRVT(0.98)PEPGAGPT(0.018)QGLLR;GLLASDLNTDGDMRVT(1)PEPGAGPTQGLLR ;;;;;; 214.98 5.50E-30 1935526000 1124169 1289395 1365025 431020 1578471 1121609 1363530 1386810 1158378 1258715 TRUE FALSE FALSE 1045370.558 1187218.644 1893599.237 1003436.343 1380484.449 983236.2853 1022360.372 1071063.637 1258787.138 943524.5711 1.107942061 1.25828058 2.006942156 1.063497839 1.463114465 1.042088691 1.083554582 1.13517302 1.334132863 1 19.84770056 -6.260065996 24.97209534 1.125223439 1.39044733 0.204947664 0.256435252 210.6982817 3831132.776 0.087662726 0.083182105 5.49E-07 6.260065996 0.265223891 GLLEFEHQR ddPTM_HeLa_A485_30min_R1 2 GLLEFEHQR 9 0 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 135.71 0.00064118 210333000 93661 146055 155990 110646 174986 128802 150736 167224 133470 149441 FALSE FALSE TRUE 114495.5663 163134.8617 213697.1923 116690.3108 157563.7794 135545.8736 118530.0222 126212.0518 160256.2047 112188.109 1.020567753 1.454119008 1.90481143 1.040130829 1.404460605 1.208201785 1.056529282 1.125003826 1.428459809 1 16.77556024 GLLEFEHQR ddPTM_HeLa_A486_30min_R1 1 GLLEFEHQR 9 0 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 196.88 4.28E-09 171330000 130720 146000 137650 45636 202540 129970 139520 142510 142250 145430 FALSE FALSE TRUE 121557.203 134430.4283 190951.7664 106242.9143 177135.5446 113935.6228 104610.6203 110063.584 154580.3445 109013.3814 1.115066806 1.233155293 1.751636028 0.974585991 1.624897258 1.045152635 0.959612654 1.009633703 1.417994218 1 16.73414571 -6.348102032 24.99999992 1.079150619 1.336546472 0.214230131 0.242396829 122.803266 35422.87857 0.082885463 0.073098101 4.49E-07 6.348102032 0.257395854 GLLGLEPVPS(ph)SPCR ddPTM_HeLa_A485_30min_R1 1 GLLGLEPVPSSPCR 14 0 E7EX78;O14901-2;O14901 E7EX78 KLF11 Krueppel-like factor 11 1 0 GLLGLEPVPS(0.5)S(0.5)PCR 65.563 0.016358 40020000 74359 98688 114060 77230 118050 95654 108790 107520 78591 112520 TRUE FALSE FALSE 90899.90301 110228.7031 156255.5404 81448.87934 106296.5275 100662.2955 85546.12777 81150.55142 94363.49282 84470.83478 1.076109917 1.304932092 1.849816458 0.964224866 1.258381402 1.191681079 1.012729755 0.960693139 1.117113298 1 16.36616569 -6.096627546 1.07350778 1.022909129 1.358113791 0.255847321 0.218217978 0.698248081 1.704183115 0.112796665 0.119688049 8.01E-07 6.096627546 0.335204662 GLLGLEPVPS(ph)SPCR ddPTM_HeLa_A486_30min_R1 1 GLLGLEPVPSSPCR 14 0 E7EX78;O14901-2;O14901 E7EX78 KLF11 Krueppel-like factor 11 1 0 GLLGLEPVPS(0.5)S(0.5)PCR 85.288 0.0020362 23755000 74725 83544 65509 26047 91362 70290 74363 78117 64533 90607 TRUE FALSE FALSE 69487.16338 76923.66918 90875.83919 60638.73234 79902.52604 61618.33446 55756.59087 60331.46438 70126.7724 67918.41745 1.023097504 1.132589246 1.338014674 0.892817215 1.176448584 0.907240433 0.820934777 0.888293141 1.032514818 1 16.05151522 -6.271330897 24.40617201 0.916011072 1.114017934 0.367493247 0.119216309 527.0089912 1300330.161 0.041734866 0.037275442 5.35E-07 6.271330897 0.198006861 GLLGLEPVPSS(ph)PCR ddPTM_HeLa_A485_30min_R1 1 GLLGLEPVPSSPCR 14 0 E7EX78;O14901-2;O14901 E7EX78 KLF11 Krueppel-like factor 11 1 0 GLLGLEPVPS(0.116)S(0.884)PCR 153.81 3.62E-08 39573000 76781 110380 98945 83394 125890 100120 114350 117130 91432 117890 TRUE FALSE FALSE 93860.66856 123287.9808 135548.8729 87949.60306 113355.9496 105362.1284 89918.18835 88403.68385 109781.5637 88502.1926 1.060546251 1.393050016 1.531587738 0.993756205 1.280826455 1.190503029 1.015999555 0.998886934 1.240438915 1 16.43342558 -6.091313864 0.999171002 1.067314491 1.299762575 0.22505842 0.15823422 0.779231307 1.668234162 0.085040817 0.091857121 8.10E-07 6.091313864 0.232448084 GLLINFIHHNWPSLLK ddPTM_HeLa_A485_30min_R1 2 GLLINFIHHNWPSLLK 16 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 0 ; ; 158.93 2.17E-10 9265000 15796.2 16167.9 16619.5 15187.9 20853.5 13222.9 21949.5 19767.8 13309.5 23216.7 FALSE FALSE TRUE 19310.01019 18058.59526 22767.74465 16017.57652 18777.25232 13915.2306 17259.81001 14919.71606 15980.59457 17429.20396 1.107911195 1.036111305 1.306298595 0.919007922 1.07734423 0.798385895 0.990281028 0.856018214 0.916886084 1 14.08921906 -5.295347916 24.71845443 0.933158277 1.138707493 0.506293863 0.096260479 424.3342528 309327.8415 0.026260456 0.038953243 5.07E-06 5.295347916 0.205549216 GLLINFIHHNWPSLLK ddPTM_HeLa_A486_30min_R1 2 GLLINFIHHNWPSLLK 16 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 0 ; ; 127.71 8.45E-06 5717900 9167.3 10356.7 10580 4319.2 12669.1 9562.3 14123.3 12806.2 9519 13778.5 FALSE FALSE TRUE 8524.71961 9535.997374 14676.85934 10055.31588 11080.02334 8382.600648 10589.50096 9890.507817 10344.11458 10328.27392 0.825376987 0.923290518 1.421036996 0.973571766 1.072785582 0.811616802 1.02529242 0.957614786 1.001533719 1 13.33431155 GLLINFIHHNWPSLLR ddPTM_HeLa_A485_30min_R1 2 GLLINFIHHNWPSLLR 16 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 0 0 ; ; 190.44 3.59E-14 33443000 24156 33907 36487 20090.5 37962 24969 33381 39283 25672 35246 FALSE FALSE TRUE 29529.41886 37872.1287 49985.05965 21187.99314 34182.36999 26276.33823 26248.87665 29648.78266 30824.13492 26459.82085 1.11600978 1.431307071 1.889092898 0.80076102 1.291859464 0.993065614 0.992027754 1.120520914 1.16494118 1 14.69151567 -5.275071942 24.99305294 1.061958409 1.47405367 0.458636255 0.212336853 692.8273934 1270183.101 0.059333582 0.088532059 5.31E-06 5.275071942 0.412095261 GLLINFIHHNWPSLLR ddPTM_HeLa_A486_30min_R1 2 GLLINFIHHNWPSLLR 16 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 0 0 ; ; 150.76 7.48E-09 21445600 24612 28868 26733 7232.5 30517 24052 29726 26837 25188 29345 FALSE FALSE TRUE 22886.8259 26580.39454 37084.73353 16837.62551 26689.2733 21084.70878 22288.24039 20726.80095 27371.31612 21996.821 1.040460615 1.208374362 1.685913321 0.765457223 1.213324112 0.958534362 1.01324825 0.942263473 1.244330539 1 14.42500742 -5.278623588 24.99971263 1.022451857 1.301262001 0.315616292 0.196828675 979.6646231 1425221.133 0.054226588 0.080646062 5.26E-06 5.278623588 0.278810144 GLLK(ac)ALK ddPTM_HeLa_A485_30min_R1 1 GLLKALK 7 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 1 GLLK(1)ALK 143.46 0.007898 160740000 281450 340570 321950 286590 387980 365880 435930 479410 322420 421670 FALSE TRUE FALSE 344057.5815 380396.6989 441052.7025 302245.686 349351.3489 385036.911 342789.9943 361833.9458 387126.7366 316555.4293 1.08687942 1.201674853 1.393287436 0.954795458 1.103602455 1.216333304 1.082875107 1.143035034 1.222935072 1 18.27209861 -11.40539655 1.988738163 2.68E-05 1.15623113 0.154575099 0.109559822 1710268.478 182380.3927 7677709.592 0.027800457 3.93E-12 11.40539655 1.156204293 GLLK(ac)ALK ddPTM_HeLa_A486_30min_R1 2 GLLKALK 7 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 1 ; GLLK(1)ALK;GLLK(1)ALK 126.54 0.017979 317040000 397173 408295 318288 122279 428478 384675 410331 431533 330172 451646 FALSE TRUE FALSE 369333.2237 375940.2172 441537.6376 284671.6916 374734.2938 337217.7096 307661.8438 333282.3562 358791.5748 338550.9019 1.090923763 1.110439273 1.304198675 0.840853443 1.106877258 0.996062063 0.908760963 0.984437951 1.059786203 1 18.36901324 -5.260530601 24.99984278 0.986936331 1.162712433 0.48319282 0.086780868 71.73865912 1973459.655 0.023577053 0.038048613 5.49E-06 5.260530601 0.175776102 GLLPGGTQVLDGTSGFS(ph)PAPK ddPTM_HeLa_A485_30min_R1 2 GLLPGGTQVLDGTSGFSPAPK 21 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK ; 284.27 5.22E-73 837900000 289290 363750 292047 373660 426040 372620 479860 494900 327865 489220 TRUE FALSE FALSE 353641.5625 406287.3983 400087.3384 394072.0996 383621.9617 392129.807 377333.9909 373524.999 393664.4981 367266.4574 0.96290188 1.10624695 1.08936531 1.072986905 1.044533074 1.067698395 1.027412069 1.017040874 1.07187708 1 18.48646761 -6.765450076 24.88806087 1.030502573 1.0611059 0.103142943 0.039714786 220.3528584 1367362.834 0.015852294 0.011130149 1.72E-07 6.765450076 0.030603327 GLLPGGTQVLDGTSGFS(ph)PAPK ddPTM_HeLa_A486_30min_R1 4 GLLPGGTQVLDGTSGFSPAPK 21 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGTSGFS(1)PAPK ;;; 283.08 6.42E-73 870249000 646144 655347 431003 261360 644377 602435 782568 777182 501459 882493 TRUE FALSE FALSE 600852.6423 603414.917 597898.9043 608459.2884 563553.2281 528112.6948 586761.2092 600234.6244 544925.8699 661511.0087 0.908303315 0.912176682 0.903838177 0.919802211 0.85191814 0.798343017 0.887001428 0.907369063 0.823759337 1 19.33540564 -5.753830643 24.99404567 0.869894323 0.910598292 0.077318875 0.051316506 368.3121763 1209867.596 0.01472807 0.018639747 1.76E-06 5.753830643 0.040703969 GLLPGLLPAPADKLT(ph)PK ddPTM_HeLa_A485_30min_R1 2 GLLPGLLPAPADKLTPK 17 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GLLPGLLPAPADKLT(1)PK;GLLPGLLPAPADKLT(1)PK ; 174.82 2.07E-12 448560000 436930 288830 182760 648120 420400 370260 594670 595440 266510 848950 TRUE FALSE FALSE 534123.5711 322606.156 250370.5293 683525.1545 378543.4999 389646.2411 467613.8965 449407.4064 319996.1124 637322.3888 0.838074388 0.5061899 0.392847535 1.072495124 0.593959206 0.611380124 0.733716412 0.705149253 0.502094573 1 19.28166382 -10.20608382 4.31312402 1.000117216 0.66127815 0.23455444 0.183302131 246273266 72.47063028 311886.3489 0.043603746 6.22E-11 10.20608382 -0.338839066 GLLPGLLPAPADKLT(ph)PK ddPTM_HeLa_A486_30min_R1 1 GLLPGLLPAPADKLTPK 17 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GLLPGLLPAPADKLT(1)PK 135.49 8.31E-06 219170000 378590 285330 123960 220090 236670 344390 505230 428320 185830 587880 TRUE FALSE FALSE 352052.796 262719.4116 171960.6318 512380.6427 206984.6417 301902.6633 378816.1102 330800.8862 201937.894 440671.0215 0.798901627 0.596180368 0.390224506 1.162728243 0.46970332 0.685097609 0.85963472 0.750675379 0.458250904 1 18.7493425 -10.61698472 4.261426953 1.007252183 0.689071593 0.159292858 0.216484376 0.014631176 0.001315043 0.205607716 0.048978598 2.42E-11 10.61698472 -0.31818059 GLLS(ph)PPMGQSGLR ddPTM_HeLa_A485_30min_R1 5 GLLSPPMGQSGLR 13 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 GLLS(0.999)PPMGQS(0.001)GLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR ;;;; 208.83 8.41E-22 2344260000 1105750 1616860 1614390 1154880 1752410 1367400 1621530 1776100 1384410 1499150 TRUE FALSE FALSE 1351720.273 1805937.712 2211620.041 1217968.17 1577933.907 1438994.95 1275076.869 1340508.69 1662248.388 1125439.495 1.201059923 1.60465109 1.965116785 1.082215593 1.402060186 1.278607119 1.132959057 1.191097963 1.476977124 1 20.10205707 -5.286412147 24.98795118 1.237353144 1.591713586 0.37344346 0.217232493 800.5075747 800992.5456 0.060912337 0.090391798 5.17E-06 5.286412147 0.354360443 GLLS(ph)PPMGQSGLR ddPTM_HeLa_A486_30min_R1 5 GLLSPPMGQSGLR 13 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR;GLLS(1)PPMGQSGLR ;;;; 232.78 2.06E-28 2892140000 1853280 2100530 1929030 637801 2337460 1682760 1881900 1984560 1574510 1785390 TRUE FALSE FALSE 1723374.642 1934076.353 2676002.077 1484832.961 2044273.971 1475158.18 1411028.715 1532719.011 1710989.795 1338316.723 1.287718081 1.445155933 1.999528237 1.109478 1.527496396 1.102248933 1.05433093 1.145258805 1.278464033 1 20.35198815 -6.035961869 1.475971473 1.118554104 1.523493628 0.366313484 0.22686959 0.440375569 1.956771068 0.093616182 0.10156621 9.21E-07 6.035961869 0.404939524 GLLSDS(ph)MTDVPVDTGVAAR ddPTM_HeLa_A485_30min_R1 7 GLLSDSMTDVPVDTGVAAR 19 0 O43399-2;O43399-4;O43399-3;A0A087WZ51;O43399;O43399-5;O43399-7;A0A087WYR3 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 GLLSDS(1)MTDVPVDTGVAAR;GLLSDS(0.989)MT(0.011)DVPVDTGVAAR;GLLSDS(0.991)MT(0.009)DVPVDTGVAAR;GLLSDS(0.938)MT(0.062)DVPVDTGVAAR;GLLSDS(0.997)MT(0.002)DVPVDTGVAAR;GLLSDS(0.999)MT(0.001)DVPVDTGVAAR;GLLS(0.003)DS(0.886)MT(0.111)DVPVDTGVAAR ;;;;;; 384.41 1.30E-145 2169351000 1212448 1576269 2101334 1755408 2585243 1848486 2368917 1980913 2086263 2424294 TRUE FALSE FALSE 1482152.875 1760599.948 2878704.89 1851301.494 2327847.13 1945269.869 1862778.531 1495090.981 2504956.848 1819962.122 0.814386661 0.967382742 1.581738903 1.017219794 1.279063505 1.068851843 1.023525989 0.821495658 1.376378562 1 20.79547699 -6.503650306 22.85050477 1.041290941 1.144681582 0.022567837 0.229884306 981.2000848 1166034.136 0.08247054 0.071455276 3.14E-07 6.503650306 0.103390641 GLLSDS(ph)MTDVPVDTGVAAR ddPTM_HeLa_A486_30min_R1 7 GLLSDSMTDVPVDTGVAAR 19 0 O43399-2;O43399-4;O43399-3;A0A087WZ51;O43399;O43399-5;O43399-7;A0A087WYR3 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 GLLSDS(0.999)MT(0.001)DVPVDTGVAAR;GLLSDS(0.994)MT(0.006)DVPVDTGVAAR;GLLSDS(1)MTDVPVDTGVAAR;GLLSDS(0.999)MT(0.001)DVPVDTGVAAR;GLLSDS(0.995)MT(0.005)DVPVDTGVAAR;GLLSDS(0.998)MT(0.002)DVPVDTGVAAR;GLLS(0.002)DS(0.89)MT(0.108)DVPVDTGVAAR ;;;;;; 260.24 3.94E-58 2385912000 1472096 2069805 2180532 848387 2706640 2168502 2518580 2597030 2082225 2343670 TRUE FALSE FALSE 1368909.672 1905786.114 3024892.387 1975087.811 2367147.973 1900974.271 1888404.645 2005742.962 2262713.94 1756799.777 0.779206424 1.08480553 1.721819655 1.124253223 1.347420465 1.082066548 1.074911706 1.14170265 1.287974856 1 20.74451835 -6.295386624 24.7005891 1.123536354 1.227966436 0.036947797 0.231843197 2180.433555 1586513.116 0.084788022 0.074780286 5.07E-07 6.295386624 0.104430082 GLLSDSMT(ph)DVPVDTGVAAR ddPTM_HeLa_A486_30min_R1 1 GLLSDSMTDVPVDTGVAAR 19 0 O43399-2;O43399-4;O43399-3;A0A087WZ51;O43399;O43399-5;O43399-7;A0A087WYR3 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 GLLS(0.061)DS(0.316)MT(0.623)DVPVDTGVAAR 84.14 0.0081361 71072000 132750 147910 142510 69095 198100 174000 186110 206970 156440 195620 TRUE FALSE FALSE 123444.9105 136189.0729 197693.6886 160856.6519 173252.4508 152533.6491 139543.3095 159847.4491 170000.3452 146635.4787 0.841848859 0.928759357 1.348198201 1.096983167 1.181517954 1.040223351 0.951634016 1.090100776 1.15933979 1 17.16187468 -4.540459153 24.99432878 1.108046987 0.863576337 0.436048787 0.103613374 183.0365878 260225.4225 0.027039135 0.071569732 2.88E-05 4.540459153 -0.24447065 GLLSGQT(ph)SPTNAK ddPTM_HeLa_A486_30min_R1 2 GLLSGQTSPTNAK 13 0 G3V1P3;Q969J3 G3V1P3 LOH12CR1 Loss of heterozygosity 12 chromosomal region 1 protein 1 0 GLLSGQT(0.669)S(0.328)PT(0.003)NAK;GLLSGQT(0.653)S(0.338)PT(0.008)NAK ; 148.52 3.48E-07 425650000 1072620 1196630 731770 402850 1208060 1172850 1370050 1351720 912450 1508040 TRUE FALSE FALSE 997434.877 1101804.681 1015130.941 937855.1589 1056533.85 1028155.692 1027248.999 1043962.864 991541.9007 1130416.968 0.882360142 0.974688731 0.8980146 0.829654176 0.934640827 0.909536676 0.908734589 0.923520164 0.877147043 1 20.1084236 -10.64983317 2.655357051 1.011081672 0.905696488 0.385158725 0.036249781 21022449.37 18791807.22 1592556.709 0.009053995 2.24E-11 10.64983317 -0.105385184 GLLSNHTGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 GLLSNHTGSPR 11 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 GLLSNHT(0.14)GS(0.86)PR;GLLSNHT(0.022)GS(0.978)PR;GLLSNHT(0.007)GS(0.993)PR;GLLSNHT(0.16)GS(0.84)PR ;;; 118.51 0.00017458 2744550000 1863790 3898530 4398410 915710 3910930 2525020 2837810 2921890 3108570 1732060 TRUE FALSE FALSE 2278383.656 4354429.171 6025564.892 965732.9186 3521544.077 2657226.143 2231488.711 2205291.896 3732431.486 1300289.318 1.752212853 3.348815613 4.634018605 0.742706185 2.708277326 2.043565309 1.716147845 1.696000932 2.870462314 1 20.31040123 -5.267260288 24.9975369 1.895644677 3.255395674 0.34400154 0.894702977 541.1486816 2323930.496 0.246316009 0.376599904 5.40E-06 5.267260288 1.359750997 GLLSNHTGS(ph)PR ddPTM_HeLa_A486_30min_R1 3 GLLSNHTGSPR 11 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 GLLSNHT(0.06)GS(0.94)PR;GLLSNHT(0.183)GS(0.817)PR;GLLSNHT(0.024)GS(0.976)PR ;; 106.55 0.0005075 1570200000 2022060 2525100 2686750 110839 2669860 1411900 1710580 1706490 2224160 765380 TRUE FALSE FALSE 1880324.036 2325001.88 3727131.554 258038.7935 2334981.263 1237714.133 1282574.791 1317959.479 2416951.98 573723.8662 3.277402504 4.052475444 6.496385758 0.449761303 4.069869498 2.157334227 2.235526299 2.297201767 4.212744357 1 19.12999701 -5.260336299 24.99937763 2.459468547 4.553126533 0.376261008 1.328852485 110.3292255 2500389.632 0.353882871 0.571228484 5.49E-06 5.260336299 2.093657986 GLLSQGS(ph)PLSWEETKR ddPTM_HeLa_A485_30min_R1 2 GLLSQGSPLSWEETKR 16 1 D6RGF8;A0A0C4DGB2;E1CEI4;P48506 D6RGF8 GCLC Glutamate--cysteine ligase catalytic subunit 1 0 GLLSQGS(0.998)PLS(0.002)WEETKR;GLLS(0.002)QGS(0.856)PLS(0.142)WEETKR ; 187.57 4.20E-18 394270000 406050 423380 416110 476920 546400 469040 618100 657240 413760 589770 TRUE FALSE FALSE 496374.4216 472890.6081 570046.4048 502972.932 491998.4975 493598.2091 486037.8856 496050.8595 496797.8368 442751.1929 1.121113685 1.06807303 1.287509585 1.136017113 1.111230202 1.114843318 1.097767535 1.120382886 1.122070013 1 18.75613667 -5.703537879 4.082873668 1.101166339 1.158392989 0.17981602 0.061404673 0.426312162 14.37192451 0.018847037 0.024091222 1.98E-06 5.703537879 0.05722665 GLLSQGS(ph)PLSWEETKR ddPTM_HeLa_A486_30min_R1 2 GLLSQGSPLSWEETKR 16 1 D6RGF8;A0A0C4DGB2;E1CEI4;P48506 D6RGF8 GCLC Glutamate--cysteine ligase catalytic subunit 1 0 GLLSQGS(0.992)PLS(0.008)WEETKR;GLLSQGS(0.97)PLS(0.03)WEETKR ; 217.42 6.60E-34 337340000 307970 319560 221950 115865 353110 318820 371580 388730 263330 389720 TRUE FALSE FALSE 286382.8934 294236.9018 307894.984 269739.5755 308819.6512 279487.2299 278606.7538 300224.6649 286155.6564 292131.5753 0.9803216 1.007206775 1.053959962 0.923349608 1.057125204 0.956716951 0.95370298 1.027703577 0.979543742 1 18.15625878 -5.213904852 24.99993944 0.987069552 1.013167126 0.096478039 0.039567679 1080.191943 568106.1604 0.010363144 0.017949314 6.11E-06 5.213904852 0.026097574 GLLTDS(ph)PAATVLAEAR ddPTM_HeLa_A485_30min_R1 4 GLLTDSPAATVLAEAR 16 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 GLLT(0.001)DS(0.999)PAAT(0.001)VLAEAR;GLLTDS(1)PAATVLAEAR;GLLTDS(1)PAATVLAEAR;GLLT(0.001)DS(0.823)PAAT(0.175)VLAEAR ;;; 297.45 1.37E-67 269923000 338003 440670 406310 310169 563411 405009 439294 480890 389749 416400 TRUE FALSE FALSE 413190.6013 492202.5232 556620.977 327112.7471 507315.8226 426214.645 345435.2482 362950.9735 467968.0493 312599.1433 1.321790575 1.574548535 1.780622209 1.046428802 1.622895755 1.363454296 1.10504221 1.161074754 1.497022815 1 18.2539543 -6.5514027 6.551632902 1.2066901 1.471474868 0.266611849 0.217190256 0.255672609 36.20640188 0.081724637 0.063947826 2.81E-07 6.5514027 0.264784768 GLLTDS(ph)PAATVLAEAR ddPTM_HeLa_A486_30min_R1 4 GLLTDSPAATVLAEAR 16 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 GLLTDS(0.996)PAAT(0.004)VLAEAR;GLLT(0.003)DS(0.997)PAATVLAEAR;GLLTDS(1)PAATVLAEAR;GLLTDS(0.99)PAAT(0.01)VLAEAR ;;; 244.54 1.20E-41 291146000 444620 518037 528637 185645 642592 469914 519482 555863 424098 489957 TRUE FALSE FALSE 413454.434 476985.8615 733339.4038 432190.942 561992.1194 411940.7884 389502.1091 429305.1293 460859.1561 367268.5781 1.125754989 1.298738552 1.996738756 1.17677081 1.53019385 1.12163363 1.060537526 1.16891331 1.25482871 1 18.48647595 -6.272109052 23.70295294 1.127949354 1.436491053 0.29784458 0.233318812 478.0239779 1061938.199 0.082658971 0.073737136 5.34E-07 6.272109052 0.308541698 GLLYDS(ph)DEEDEERPAR ddPTM_HeLa_A485_30min_R1 14 GLLYDSDEEDEERPAR 16 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR ;;;;;;;;;;;;; 344.39 2.62E-92 1.97E+11 8413629 10657929 11797490 9178586 12691330 10546221 12396440 13244920 10372110 11628900 TRUE FALSE FALSE 10285211.74 11904281.08 16161872.49 9679988.912 11427736.62 11098404.82 9747839.324 9996582.603 12453697.34 8730029.244 1.178141729 1.363601513 1.851296489 1.108815176 1.309014701 1.271290681 1.116587248 1.145080082 1.426535581 1 23.05755506 GLLYDS(ph)DEEDEERPAR ddPTM_HeLa_A486_30min_R1 16 GLLYDSDEEDEERPAR 16 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR ;;;;;;;;;;;;;;; 316.54 3.32E-77 1.62E+11 13724132 16674666 14396862 5048571 18758839 14886318 17159380 17345310 13994386 16863381 TRUE FALSE FALSE 12762141.22 15353304.74 19971712.53 11753328.43 16405930.49 13049795.44 12865921.63 13396161.56 15207430.65 12640680.64 1.009608706 1.214594782 1.579955471 0.929801865 1.297867652 1.032364935 1.017818739 1.059765842 1.203054731 1 23.59157081 -5.960570257 1.437488348 1.068453308 1.231280268 0.11729745 0.173609724 0.858440232 3.659835899 0.070681171 0.081909776 1.10E-06 5.960570257 0.16282696 GLLYDS(ph)DEEDEERPARK ddPTM_HeLa_A485_30min_R1 11 GLLYDSDEEDEERPARK 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK ;;;;;;;;;; 294.59 9.99E-69 41556370000 2990202 3738397 3078160 3289152 4434539 4014320 5686490 6355540 3294742 4335060 TRUE FALSE FALSE 3655362.119 4175570.009 4216899.477 3468830.045 3993020.727 4224503.588 4471524.957 4796833.85 3955966.498 3254409.323 1.12320294 1.283050039 1.295749569 1.065886218 1.226957131 1.298086125 1.373989721 1.473949148 1.215571278 1 21.63396429 -6.221159129 4.355583442 1.308910863 1.200064421 0.039647904 0.132624796 0.460650971 20.01345164 0.044570706 0.043311936 6.01E-07 6.221159129 -0.108846441 GLLYDS(ph)DEEDEERPARK ddPTM_HeLa_A486_30min_R1 9 GLLYDSDEEDEERPARK 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK ;;;;;;;; 263.09 4.73E-52 32835920000 3774720 3596340 2426880 1534461 3976430 3334230 4509850 4459753.3 2753240 4329171.9 TRUE FALSE FALSE 3510131.621 3311352.921 3366632.93 3572302.755 3477669.071 2922886.603 3381437.83 3444364.829 2991893.06 3245119.078 1.081664967 1.020410297 1.037445113 1.100823319 1.071661467 0.900702419 1.042007319 1.061398595 0.921967111 1 21.62983999 GLLYECCVEFCQS(ph)K ddPTM_HeLa_A485_30min_R1 2 GLLYECCVEFCQSK 14 0 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 GLLYECCVEFCQS(1)K;GLLYECCVEFCQS(1)K ; 71.344 0.0065891 2938560000 578570 1927730 2471240 96730 1785720 1262210 803700 1201270 1442890 220930 TRUE FALSE FALSE 707270.9005 2153161.254 3385454.513 102014.115 1607927.447 1328297.364 631982.9294 906656.649 1732464.788 165856.2169 4.264361708 12.98209554 20.4119844 0.615075617 9.694707118 8.008728214 3.810426532 5.466521942 10.44558245 1 17.33957357 -5.27502466 24.99521855 5.962646538 12.59574285 0.308244029 4.764125082 969.4711295 1783703.443 1.332533452 1.988717914 5.31E-06 5.27502466 6.633096309 GLMAGGRPEGQYS(ph)EDEDT(ph)DTDEYK ddPTM_HeLa_A485_30min_R1 3 GLMAGGRPEGQYSEDEDTDTDEYK 24 1 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 2 0 GLMAGGRPEGQY(0.111)S(0.889)EDEDT(0.99)DT(0.01)DEYK;GLMAGGRPEGQYS(1)EDEDT(0.924)DT(0.076)DEYK;GLMAGGRPEGQYS(1)EDEDT(0.998)DT(0.002)DEYK ;; 240.21 6.24E-49 1723040000 980650 905200 624700 1476070 852820 753380 1138590 867410 712490 1670470 TRUE FALSE FALSE 1198792.209 1011055.266 855802.5259 1556703.966 767910.2464 792825.8119 895320.9451 654676.3375 855480.2077 1254052.572 0.955934573 0.806230368 0.682429545 1.241338682 0.612342946 0.632210985 0.713942115 0.522048559 0.682172524 1 20.2581664 GLMAGGRPEGQYS(ph)EDEDT(ph)DTDEYK ddPTM_HeLa_A486_30min_R1 3 GLMAGGRPEGQYSEDEDTDTDEYK 24 1 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 2 0 GLMAGGRPEGQYS(1)EDEDT(0.899)DT(0.101)DEYK;GLMAGGRPEGQYS(1)EDEDT(0.921)DT(0.079)DEYK;GLMAGGRPEGQYS(1)EDEDT(0.995)DT(0.005)DEYK ;; 238.18 7.28E-49 1530960000 1044660 1045370 560009 520640 722380 1098950 1285830 1139740 837557 1677480 TRUE FALSE FALSE 971434.7286 962531.074 776859.4824 1212076.232 631772.3645 963372.7223 964101.7339 880246.0823 910157.1151 1257428.089 0.772556886 0.76547604 0.617816231 0.963932842 0.502432203 0.766145381 0.766725145 0.700036916 0.723824386 1 20.26204447 -10.74459123 2.580233327 1.059206863 0.729982434 0.341155505 0.112141865 25632974.62 19189653.63 9684656.58 0.026795958 1.80E-11 10.74459123 -0.329224428 GLMAGGRPEGQYS(ph)EDEDT(ph)DTDEYKEAK ddPTM_HeLa_A485_30min_R1 6 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 2 0 GLMAGGRPEGQYS(1)EDEDT(0.997)DT(0.003)DEYKEAK;GLMAGGRPEGQY(0.01)S(0.99)EDEDT(0.495)DT(0.493)DEY(0.012)KEAK;GLMAGGRPEGQY(0.002)S(0.998)EDEDT(0.993)DT(0.007)DEYKEAK;GLMAGGRPEGQY(0.001)S(0.999)EDEDT(0.913)DT(0.087)DEYKEAK;GLMAGGRPEGQY(0.001)S(0.999)EDEDT(0.997)DT(0.003)DEYKEAK;GLMAGGRPEGQY(0.002)S(0.998)EDEDT(1)DTDEYKEAK ;;;;; 246.13 2.39E-49 4617740000 1268006 994902 711946 2324350 1450070 1384569 2357830 2352070 955728 3162420 TRUE FALSE FALSE 1550069.56 1111247.134 975324.4519 2451323.355 1305695.939 1457062.892 1854060.359 1775221.145 1147533.843 2374086.894 0.65291189 0.468073488 0.410820874 1.032533123 0.549978159 0.613736125 0.780957244 0.747749018 0.483357979 1 21.17894131 -14 0.188504844 2.462225342 0.578490276 0.266831865 0.175306459 192.5030153 1.878524713 106.4220883 0.494336087 1.00E-14 14 -1.883735066 GLMAGGRPEGQYS(ph)EDEDT(ph)DTDEYKEAK ddPTM_HeLa_A486_30min_R1 6 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 2 0 GLMAGGRPEGQYS(0.999)EDEDT(0.984)DT(0.016)DEYKEAK;GLMAGGRPEGQYS(1)EDEDT(0.999)DT(0.001)DEYKEAK;GLMAGGRPEGQY(0.012)S(0.988)EDEDT(0.853)DT(0.147)DEYKEAK;GLMAGGRPEGQYS(1)EDEDT(0.848)DT(0.152)DEYKEAK;GLMAGGRPEGQY(0.001)S(0.999)EDEDT(0.996)DT(0.004)DEYKEAK;GLMAGGRPEGQY(0.004)S(0.996)EDEDT(0.961)DT(0.039)DEYKEAK ;;;;; 198.44 1.68E-27 3997580000 1471798 1235368 552982 1203244 1185281 1744650 2624840 2328378 941057 3145200 TRUE FALSE FALSE 1368632.561 1137472.941 767111.4398 2801212.841 1036612.005 1529412.821 1968077.269 1798257.158 1022628.578 2357621.448 0.580514129 0.482466319 0.325375153 1.188152086 0.439685517 0.64871009 0.834772381 0.76274211 0.433754358 1 21.16890066 -14 0.06956839 2.031284713 0.25430952 0.164635645 0.239104591 603.9173438 3.020652367 104.5497422 13.16243903 1.00E-14 14 -1.776975193 GLMAGGRPEGQYS(ph)EDEDTDTDEYK ddPTM_HeLa_A485_30min_R1 2 GLMAGGRPEGQYSEDEDTDTDEYK 24 1 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 1 0 GLMAGGRPEGQYS(1)EDEDTDTDEYK;GLMAGGRPEGQYS(1)EDEDTDTDEYK ; 220.67 2.33E-38 629690000 236039 245209 192136 374213 236137 208299 293672 244769 238532 458370 TRUE FALSE FALSE 288545.0612 273884.0595 263215.1018 394655.3086 212626.3712 219205.2135 230926.5781 184739.019 286403.1845 344106.7947 0.83853346 0.795927496 0.76492271 1.14689775 0.617908087 0.637026693 0.671089853 0.536865362 0.832309007 1 18.39249685 GLMAGGRPEGQYS(ph)EDEDTDTDEYK ddPTM_HeLa_A486_30min_R1 1 GLMAGGRPEGQYSEDEDTDTDEYK 24 1 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 1 0 GLMAGGRPEGQYS(1)EDEDTDTDEYK 240.42 3.44E-49 150550000 63568 61859 43938 31534 49150 70586 85437 72321 60469 121320 TRUE FALSE FALSE 59112.21147 56957.06755 60951.9703 73412.74564 42985.14869 61877.81699 64059.75894 55855.08706 65710.50161 90940.68234 0.650008444 0.626310097 0.670238761 0.807259675 0.472672379 0.680419537 0.704412561 0.614192522 0.722564422 1 16.47263821 -8.132813169 4.593705162 0.999986866 0.654980009 0.633514372 0.078932649 0.639512983 21.35916927 0.074398245 0.019434691 7.37E-09 8.132813169 -0.345006856 GLMAGGRPEGQYS(ph)EDEDTDTDEYKEAK ddPTM_HeLa_A485_30min_R1 1 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 1 0 GLMAGGRPEGQYS(1)EDEDTDTDEYKEAK 185.3 1.35E-20 817080000 95139 95067 59801 187310 126810 136100 181740 227110 104840 280110 TRUE FALSE FALSE 116302.3423 106184.2587 81923.87843 197542.271 114184.3511 143225.9855 142909.7643 171410.9164 125880.4264 210283.732 0.553073417 0.504957077 0.389587333 0.939408242 0.543001354 0.681108254 0.67960447 0.815141118 0.598621801 1 17.68197772 -14 0.055383188 2.398518641 4.65E-13 0.440657308 0.138617756 430.2761959 1.747308014 84.56828699 16.10777099 1.00E-14 14 -2.398518641 GLNGCES(ph)PDADDYFEHSPLSEDR ddPTM_HeLa_A486_30min_R1 1 GLNGCESPDADDYFEHSPLSEDR 23 0 Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GLNGCES(1)PDADDYFEHSPLSEDR 185.02 5.54E-21 109690000 13806 19708 18339 4361.9 26086 14425 19518 23878 13965 16458 TRUE FALSE FALSE 12838.27069 18146.2663 25440.35194 10154.72364 22814.05064 12645.39016 14634.38996 18441.50065 15175.49744 12336.80968 1.040647544 1.470904292 2.062149989 0.82312396 1.849266645 1.025012989 1.186237799 1.494835467 1.230099016 1 13.59068174 -6.31108125 24.99986172 1.218101923 1.449693863 0.117105638 0.354642423 968.599099 487787.9844 0.121936569 0.107537954 4.89E-07 6.31108125 0.23159194 GLNGCLTTPNS(ph)PSMHSR ddPTM_HeLa_A485_30min_R1 1 GLNGCLTTPNSPSMHSR 17 0 H7C1N2;J3KR05;O75128-2 H7C1N2 COBL Protein cordon-bleu 1 0 GLNGCLTTPNS(0.791)PS(0.208)MHS(0.001)R 103.58 0.00019291 376240000 152590 263450 271790 130820 269690 195620 238760 284800 247380 188370 TRUE FALSE FALSE 186533.1191 294258.1858 372336.4311 137966.3653 242838.7167 205862.3607 187746.9755 214952.3535 297026.8969 141412.8257 1.3190679 2.080845103 2.632974975 0.975628375 1.717232616 1.455754524 1.327651679 1.520034356 2.100424028 1 17.10955345 -5.269150217 24.99884784 1.471285437 2.017950914 0.270140839 0.42637867 793.5099054 2572590.862 0.118515335 0.179528057 5.38E-06 5.269150217 0.546665477 GLNGCLTTPNS(ph)PSMHSR ddPTM_HeLa_A486_30min_R1 1 GLNGCLTTPNSPSMHSR 17 0 H7C1N2;J3KR05;O75128-2 H7C1N2 COBL Protein cordon-bleu 1 0 GLNGCLTTPNS(0.894)PS(0.105)MHS(0.001)R 113.78 8.88E-05 326950000 212130 222780 202510 27007 266570 164540 208990 197370 173060 129040 TRUE FALSE FALSE 197260.7824 205126.1014 280927.2954 62873.66086 233134.3049 144240.7277 156698.4915 152433.1596 188060.9801 96727.54409 2.039344473 2.120658633 2.904315395 0.650007828 2.410216316 1.491206347 1.619998657 1.575902304 1.944234002 1 16.56163915 -1 0.059040455 3.14E-12 5.481186457 0.226023931 0.549922214 533.588794 2.361417346 45.09435053 252.7857466 0.1 1 5.481186457 GLNNDS(ph)PER ddPTM_HeLa_A486_30min_R1 1 GLNNDSPER 9 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 GLNNDS(1)PER 66.84 0.012222 0 131230 184720 270760 43747 235950 143110 180590 162730 155680 166660 TRUE FALSE FALSE 122031.4547 170082.1145 375605.5232 101845.2269 206354.9509 125454.5432 135404.4719 125679.9314 169174.4677 124927.2512 0.976820137 1.361449266 3.006593994 0.815236274 1.651800939 1.004220793 1.083866575 1.006024948 1.354183864 1 16.93072869 GLNNDS(ph)PERR ddPTM_HeLa_A485_30min_R1 1 GLNNDSPERR 10 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 GLNNDS(1)PERR 179.59 4.49E-09 1079600000 646940 1006900 933100 677610 1098800 846140 979570 1157300 875980 922920 TRUE FALSE FALSE 790849.5711 1124648.196 1278292.52 714626.1185 989399.6139 890442.582 770276.8671 873470.3604 1051781.151 692853.0291 1.141439148 1.62321322 1.84496923 1.031425264 1.428007921 1.285182491 1.111746409 1.260686356 1.518043664 1 19.40218983 -5.2712917 24.97435257 1.249620823 1.545207813 0.278876418 0.222072072 875.0753962 2218200.798 0.06186646 0.092982705 5.35E-06 5.2712917 0.29558699 GLNNDS(ph)PERR ddPTM_HeLa_A486_30min_R1 4 GLNNDSPERR 10 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 GLNNDS(1)PERR;GLNNDS(1)PERR;GLNNDS(1)PERR;GLNNDS(1)PERR ;;; 218.12 1.87E-16 4214860000 3120680 3697512 3499698 1136040 4336249 3231175 3441253 3545371 2883114 3256857 TRUE FALSE FALSE 2901936.447 3404507.683 4854874.791 2644758.532 3792356.217 2832545.481 2580215.102 2738167.418 3133024.643 2441318.809 1.188675742 1.394536294 1.988627939 1.083331895 1.553404743 1.160252184 1.056893959 1.121593545 1.283332858 1 21.21922928 -6.335362526 6.21414209 1.124817069 1.44915926 0.313088819 0.235088414 0.303658469 20.47687208 0.083353688 0.07347133 4.62E-07 6.335362526 0.324342191 GLNPDGTPALSTLGGFS(ph)PAS(ph)KPSSPR ddPTM_HeLa_A485_30min_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 0 GLNPDGTPALS(0.004)T(0.004)LGGFS(0.989)PAS(0.418)KPS(0.302)S(0.283)PR 63.516 0.020663 1213300000 110190 114430 87170 131570 118160 107940 135280 153530 102840 165640 TRUE FALSE FALSE 134701.3853 127811.5931 119417.8104 138757.3359 106395.5755 113591.5715 106376.3229 115876.5268 123479.0447 124348.9964 1.083252694 1.027845795 0.960343983 1.115870172 0.855620702 0.913490055 0.855465874 0.931865396 0.993003951 1 16.92403534 -5.765662782 24.9999929 0.917457965 1.039294836 0.50390345 0.058797107 90.02666223 532903.0278 0.017937099 0.02106157 1.72E-06 5.765662782 0.121836872 GLNPDGTPALSTLGGFS(ph)PASKPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 0 GLNPDGTPALSTLGGFS(0.998)PAS(0.03)KPS(0.522)S(0.45)PR 89.159 0.0046015 542770000 229380 212130 180690 277510 266590 217680 292620 317590 189360 311860 TRUE FALSE FALSE 280404.7896 236936.7582 247534.7501 292669.6686 240047.3635 229077.3882 230099.3465 239700.5545 227362.8151 234119.0414 1.197701768 1.012035402 1.057302937 1.250089129 1.025321828 0.978465429 0.982830551 1.023840492 0.971141919 1 17.83688275 -5.981444977 24.99705492 0.99329406 1.118508594 0.5123826 0.063612745 216.7826112 292044.9023 0.019850238 0.022504384 1.04E-06 5.981444977 0.125214534 GLNPDGTPALSTLGGFS(ph)PASKPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 0 GLNPDGT(0.001)PALS(0.003)T(0.003)LGGFS(0.987)PAS(0.041)KPS(0.565)S(0.4)PR 57.484 0.031544 2252300000 113390 109790 58171 43997 101800 93129 114810 114390 79399 129990 TRUE FALSE FALSE 105441.9465 101089.8406 80696.36907 102427.2395 89031.29475 81639.69085 86083.32366 88345.89412 86281.36925 97439.65791 1.082125582 1.037460955 0.828167615 1.051186362 0.913706972 0.837848701 0.883452647 0.906672868 0.885485141 1 16.57222145 -4.614091737 6.446723699 0.911458532 1.071175756 0.458682125 0.064353523 0.161854732 9.19688771 0.016325043 0.04427025 2.43E-05 4.614091737 0.159717224 GLNPDGTPALSTLGGFS(ph)PASKPSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 0 GLNPDGTPALSTLGGFS(0.995)PAS(0.005)KPS(0.215)S(0.785)PR;GLNPDGTPALS(0.001)TLGGFS(0.995)PAS(0.008)KPS(0.21)S(0.786)PR ; 186.59 3.12E-20 2012040000 475510 540130 411520 575180 578340 535220 671730 688230 491900 789270 TRUE FALSE FALSE 581285.559 603293.505 563758.3728 606600.627 520758.4389 563243.2916 528209.398 519440.5134 590619.818 592519.5144 0.981040362 1.018183351 0.951459587 1.023764808 0.87888825 0.950590281 0.891463294 0.876663976 0.996793867 1 19.17650314 -5.753667843 24.99970523 0.925095826 0.992356232 0.29746499 0.045240776 197.7526397 636133.1517 0.012793929 0.016206013 1.76E-06 5.753667843 0.067260406 GLNPDGTPALSTLGGFS(ph)PASKPSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 2 0 GLNPDGTPALSTLGGFS(0.999)PAS(0.007)KPS(0.016)S(0.978)PR;GLNPDGTPALSTLGGFS(1)PASKPS(0.012)S(0.988)PR ; 191.62 1.60E-20 1222490000 715030 655460 410240 287988 631020 663270 770240 751160 516340 933260 TRUE FALSE FALSE 664910.0894 603518.9625 569095.9146 670450.6181 551871.5876 581442.491 577517.8052 580137.2657 561096.7669 699565.6215 0.950461356 0.86270529 0.813498973 0.958381312 0.788877513 0.831147891 0.825537716 0.829282126 0.802064524 1 19.41609987 -4.277847699 4.081083318 0.848677925 0.957693291 0.147401905 0.065699391 0.354133788 12.71541195 0.015509875 0.110526536 5.27E-05 4.277847699 0.109015366 GLNPDGTPALSTLGGFSPASKPSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 0 GLNPDGTPALSTLGGFSPAS(0.006)KPS(0.18)S(0.814)PR 184.55 1.65E-20 816910000 272580 278130 233500 316250 350930 336720 435820 483310 319420 563130 TRUE FALSE FALSE 333214.4806 310654.8841 319881.3667 333525.9367 315990.177 354350.1385 342703.4967 364777.4647 383524.6641 422752.0546 0.788203101 0.734839442 0.756664251 0.788939836 0.747459826 0.838198501 0.81064892 0.862863848 0.907209462 1 18.68945224 -7.703735855 0.547610505 1.004097902 0.755164163 0.920918345 0.021898716 0.195822828 0.144040861 0.021807555 0.011281663 1.98E-08 7.703735855 -0.248933739 GLNVIGASDQS(ph)PLQS(ph)PSNLR ddPTM_HeLa_A485_30min_R1 1 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 2 0 GLNVIGAS(0.001)DQS(0.999)PLQS(1)PSNLR 185.23 1.04E-18 77034000 106830 137270 154400 121830 175240 122730 138660 127290 134390 165810 TRUE FALSE FALSE 130593.9649 153322.5324 211518.9851 128485.2644 157792.4903 129155.953 109034.1583 96071.92792 161360.8403 124476.6185 1.049144542 1.231737609 1.699266799 1.032204007 1.267647629 1.037592076 0.875940876 0.771807019 1.296314458 1 16.92551525 -6.286431174 2.375662948 0.963977667 1.276418377 0.268948169 0.212082622 0.388650726 4.31849971 0.083326037 0.075688949 5.17E-07 6.286431174 0.31244071 GLNVIGASDQS(ph)PLQS(ph)PSNLR ddPTM_HeLa_A486_30min_R1 1 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 2 0 GLNVIGAS(0.001)DQS(0.999)PLQS(0.997)PS(0.003)NLR 115.57 3.39E-05 70655000 122210 140460 120880 38609 153750 111770 123230 129320 108410 131650 TRUE FALSE FALSE 113643.7101 129329.4381 167687.9733 89883.70319 134465.2413 97980.95379 92396.55061 99876.65904 117807.0661 98683.9831 1.15159225 1.310541326 1.699242045 0.910823625 1.362584252 0.992875953 0.936287204 1.012085811 1.193781021 1 16.59052833 -5.750042659 1.379264965 1.034638295 1.348899044 0.28341323 0.197285302 0.528357173 2.100593954 0.075386718 0.106791415 1.78E-06 5.750042659 0.314260749 GLNVIGASDQS(ph)PLQSPSNLR ddPTM_HeLa_A485_30min_R1 3 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 GLNVIGASDQS(1)PLQSPSNLR;GLNVIGAS(0.001)DQS(0.999)PLQSPSNLR;GLNVIGASDQS(1)PLQSPSNLR ;; 335.98 3.18E-114 260251000 252795 277263 339744 249036 351702 302565 307608 303747 302319 366974 TRUE FALSE FALSE 309028.3756 309686.496 465429.4435 262640.2061 316685.314 318406.8355 241885.0379 229252.572 362991.6503 275494.1355 1.121723971 1.124112844 1.689435032 0.953342276 1.149517442 1.155766293 0.878004308 0.832150462 1.317602096 1 18.07166208 GLNVIGASDQS(ph)PLQSPSNLR ddPTM_HeLa_A486_30min_R1 3 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 GLNVIGASDQS(1)PLQSPSNLR;GLNVIGASDQS(1)PLQSPSNLR;GLNVIGASDQS(1)PLQSPSNLR ;; 191.89 2.15E-19 283485000 430645 452303 415738 147510 519912 433521 457366 489159 381089 467084 TRUE FALSE FALSE 400459.0094 416460.863 576722.8874 343410.7347 454699.789 380037.5867 342928.1893 377788.174 414122.1014 350123.1262 1.143766234 1.189469738 1.647200211 0.980828483 1.298685391 1.08543983 0.979450267 1.079015197 1.182789911 1 18.41750283 -5.986798875 1.367665269 1.064874795 1.284119815 0.227176421 0.166948655 0.63824304 2.46786259 0.070068363 0.079847242 1.03E-06 5.986798875 0.21924502 GLPEAEDS(ph)PCRAPVLPK ddPTM_HeLa_A485_30min_R1 1 GLPEAEDSPCRAPVLPK 17 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 GLPEAEDS(1)PCRAPVLPK 199.12 2.63E-25 257010000 247250 263670 239860 299820 327770 317480 323540 356940 245340 353590 TRUE FALSE FALSE 302249.9095 294503.9129 328594.1954 316198.4074 295136.0679 334102.7619 254413.0359 269399.9053 294577.4876 265446.5203 1.138647096 1.109466089 1.237892269 1.191194396 1.111847567 1.258644346 0.958434247 1.014893339 1.109743263 1 18.0180617 -6.766708389 24.99999843 1.022008821 1.172430711 0.631550715 0.057550327 89.07687964 422639.4539 0.023614832 0.016458526 1.71E-07 6.766708389 0.15042189 GLPFQANAQDIINFFAPLKPVR ddPTM_HeLa_A485_30min_R1 2 GLPFQANAQDIINFFAPLKPVR 22 1 H0Y8R1;F5H5I6;H0YAK1;Q12849-5;Q12849 H0Y8R1 GRSF1 G-rich sequence factor 1 0 0 ; ; 222.25 3.40E-35 20635600 22147.8 27042 23504.8 21209.9 28283.5 28268.1 35054 36958 20950.5 35299 FALSE FALSE TRUE 27074.5017 30204.32667 32200.20364 22368.54313 25467.49543 29748.17401 27564.42654 27893.99255 25155.07318 26499.60893 1.021694387 1.139802732 1.215119956 0.844108424 0.961051746 1.12258917 1.040182389 1.052619026 0.949262053 1 14.69368345 -5.238528781 24.99973254 1.00357834 1.126965379 0.342492249 0.081932098 1018.71486 1111606.262 0.023328035 0.040368 5.77E-06 5.238528781 0.123387039 GLPFQANAQDIINFFAPLKPVR ddPTM_HeLa_A486_30min_R1 2 GLPFQANAQDIINFFAPLKPVR 22 1 H0Y8R1;F5H5I6;H0YAK1;Q12849-5;Q12849 H0Y8R1 GRSF1 G-rich sequence factor 1 0 0 ; ; 189.48 5.63E-24 13745000 9367.1 13563.1 12103.5 4438.88 14587 12082.9 13871.6 14131.7 12675.9 14807.4 FALSE FALSE TRUE 8710.514662 12488.31056 16790.29934 10333.93697 12757.36244 10592.23465 10400.77896 10914.2204 13774.65722 11099.53066 0.784764233 1.125120597 1.512703542 0.931024679 1.14936053 0.954295724 0.937046735 0.983304676 1.241012583 1 13.43821105 GLPLFPLVKPHINFMAAK ddPTM_HeLa_A486_30min_R1 1 GLPLFPLVKPHINFMAAK 18 1 A0A3B3ISG5;P14735;P14735-2 A0A3B3ISG5 IDE Insulin-degrading enzyme 0 0 151.72 5.32E-10 3436900 7352.2 6975.6 6953.9 4392.8 8417.6 7414.5 8770.3 9461.2 7067.9 11588 FALSE FALSE TRUE 6836.848747 6422.828051 9646.636312 10226.6604 7361.786117 6499.774375 6575.878177 7307.091297 7680.551263 8686.289375 0.787085078 0.739421377 1.110558939 1.177333607 0.847517945 0.748279742 0.757041113 0.84122126 0.884215449 1 13.0845243 -5.97083812 24.99932771 0.827018295 0.957376811 0.117617904 0.13886759 421.3161748 361175.9553 0.046958829 0.053245585 1.07E-06 5.97083812 0.130358516 GLPLGSAVSS(ph)PVLFS(ph)PVGR ddPTM_HeLa_A485_30min_R1 2 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 GLPLGSAVS(0.437)S(0.563)PVLFS(1)PVGR;GLPLGS(0.085)AVS(0.416)S(0.499)PVLFS(1)PVGR ; 143.39 5.31E-08 85582000 87187 98481 115243 122430 137957 88338 111452 96142 123278 160645 TRUE FALSE FALSE 106581.4474 109997.4963 157876.1814 129118.0409 124221.5167 92963.24108 87639.36972 72563.02376 148018.7638 120599.158 0.883766099 0.912091744 1.309098538 1.070637997 1.030036352 0.77084486 0.726699682 0.601687648 1.227361504 1 16.87986031 -6.202305315 6.596499765 0.831972449 1.051755967 0.162579785 0.191592333 0.373987231 34.1407869 0.0643346 0.06409945 6.28E-07 6.202305315 0.219783517 GLPLGSAVSSPVLFS(ph)PVGR ddPTM_HeLa_A485_30min_R1 2 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 GLPLGSAVSSPVLFS(1)PVGR;GLPLGSAVSSPVLFS(1)PVGR ; 328.58 8.35E-102 358400000 78409 102545 119628 90594 114238 80876 95837 87969 85290 121964 TRUE FALSE FALSE 95850.81154 114536.7457 163883.3753 95542.92082 102864.0636 85110.5423 75360.64203 66394.46482 102406.9207 91560.61938 1.046856303 1.250938957 1.789889326 1.043493605 1.123453121 0.929554025 0.823068286 0.725142155 1.118460331 1 16.4824396 -5.793967498 1.907606261 0.903342202 1.343493751 0.408622285 0.211956322 0.316869322 2.376911386 0.075740452 0.096740051 1.61E-06 5.793967498 0.440151549 GLPLGSAVSSPVLFS(ph)PVGR ddPTM_HeLa_A486_30min_R1 2 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 GLPLGSAVSSPVLFS(1)PVGR;GLPLGSAVSSPVLFS(1)PVGR ; 414.22 9.31E-164 423000000 256418 304000 237387 91154 264823 243922 250930 263899 226995 267190 TRUE FALSE FALSE 238444.4223 279909.9329 329309.6038 212211.1187 231606.43 213829.3837 188144.6599 203814.9586 246671.1094 200283.8849 1.190532241 1.397565925 1.644214181 1.05955164 1.156390741 1.067631496 0.939389907 1.017630344 1.231607373 1 17.61168682 -5.289895237 24.42892965 1.066568569 1.409450289 0.605082868 0.127097361 351.5756705 301821.712 0.036585477 0.054278053 5.13E-06 5.289895237 0.342881721 GLPNGPTHAFSS(ph)PSES(ph)PDSTVDR ddPTM_HeLa_A485_30min_R1 1 GLPNGPTHAFSSPSESPDSTVDR 23 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 2 0 GLPNGPTHAFS(0.455)S(0.544)PS(0.355)ES(0.647)PDSTVDR 139.93 3.29E-07 136350000 44755 73608 77792 38366 81146 71225 71737 80578 57186 61599 TRUE FALSE FALSE 54710.59535 82215.8153 106570.498 40461.83743 73066.81932 74954.23087 56409.80391 60816.11916 68662.70566 46243.50295 1.183097989 1.777889002 2.30455072 0.874973453 1.58004508 1.620859712 1.219842796 1.315127862 1.484807622 1 15.49696307 -8.136476768 0.229724708 0.865494479 1.716654471 0.161819793 0.361452932 6.515145765 1.101557215 1.932783987 1.074281726 7.30E-09 8.136476768 0.851159992 GLPNGPTHAFSS(ph)PSES(ph)PDSTVDR ddPTM_HeLa_A486_30min_R1 1 GLPNGPTHAFSSPSESPDSTVDR 23 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 2 0 GLPNGPTHAFS(0.159)S(0.827)PS(0.268)ES(0.708)PDS(0.019)T(0.02)VDR 71.882 0.0070761 78476000 42727 43283 50357 11543 64959 43581 42045 48397 43544 37957 TRUE FALSE FALSE 39732.05794 39853.09745 69856.57901 26872.68735 56811.2365 38204.41932 31524.89629 37378.0596 47318.42898 28452.32014 1.396443515 1.400697632 2.455215556 0.944481407 1.996717182 1.342752335 1.107990355 1.313708668 1.663078046 1 14.79625868 -6.493127323 24.24412851 1.287055832 1.63602656 0.160381107 0.406048193 926.9851725 755391.9155 0.138402477 0.121844566 3.21E-07 6.493127323 0.348970729 GLPPS(ph)MER ddPTM_HeLa_A485_30min_R1 16 GLPPSMER 8 0 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER ;;;;;;;;;;;;;;; 138.08 0.00045197 21081360000 9863301 15308700 15868820 10420251 17367990 13962710 15869010 18690720 15051400 14929721 TRUE FALSE FALSE 12057358.28 17098919.3 21739356.87 10989482.93 15638771.93 14693775.91 12478466.38 14106791.61 18072077.92 11208016.32 1.075779865 1.525597288 1.939625734 0.980502046 1.395320233 1.311005935 1.11335191 1.258634108 1.612424305 1 23.41802763 -5.284467264 24.99478631 1.253834525 1.51486079 0.186776374 0.261554426 1350.761534 1466132.41 0.073443326 0.10901036 5.19E-06 5.284467264 0.261026266 GLPPS(ph)MER ddPTM_HeLa_A486_30min_R1 21 GLPPSMER 8 0 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER ;;;;;;;;;;;;;;;;;;;; 147.4 0.00029132 25407870000 12263191 13996411 13863552 4478798 16472222 11732904 13630145 14270465 12136223 13364379 TRUE FALSE FALSE 11403604.64 12887284.42 19231890.61 10426868.09 14406122.32 10285417.6 10219738.56 11021391.64 13188200.58 10017851.51 1.138328376 1.286431966 1.919761996 1.040828772 1.438045104 1.026708929 1.020152729 1.100175185 1.31646996 1 23.2560698 -6.261083813 24.99511747 1.094428016 1.373178414 0.253158187 0.233334972 47.9815538 3373003.608 0.080068047 0.075338865 5.48E-07 6.261083813 0.278750398 GLPPS(ph)VER ddPTM_HeLa_A485_30min_R1 4 GLPPSVER 8 0 Q96E39 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 0 GLPPS(1)VER;GLPPS(1)VER;GLPPS(1)VER;GLPPS(1)VER ;;; 114.51 0.00092249 76084000 225255 315732 325672 241893 436865 418681 544823 628083 413307 582394 TRUE FALSE FALSE 275362.1976 352654.1109 446151.6251 255107.0021 393369.1867 440602.4898 428417.1153 474044.6595 496253.9238 437213.894 0.629811178 0.806594017 1.020442468 0.583483292 0.899717946 1.00775043 0.97987992 1.084239696 1.135036948 1 18.73797972 -6.14732387 3.015774542 1.046071816 0.779006911 0.551915479 0.118130748 0.219144937 3.820026157 0.042245178 0.042178682 7.12E-07 6.14732387 -0.267064905 GLPPS(ph)VER ddPTM_HeLa_A486_30min_R1 4 GLPPSVER 8 0 Q96E39 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 0 GLPPS(1)VER;GLPPS(1)VER;GLPPS(1)VER;GLPPS(1)VER ;;; 116.52 0.00082405 298830000 370571 480056 456643 132746 540520 388607 469387 484812 381902 456911 TRUE FALSE FALSE 344595.8865 442014.6142 633467.3989 309039.3966 472722.9415 340664.6194 351941.4079 374430.891 415005.5729 342497.5116 1.006126687 1.290562995 1.849553289 0.902311363 1.380222996 0.994648451 1.02757362 1.093236822 1.211703907 1 18.38573398 GLPSDYGRPLS(ph)FPPPR ddPTM_HeLa_A486_30min_R1 2 GLPSDYGRPLSFPPPR 16 1 O15357;O15357-2;H7BXR2;H0YFZ4 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 GLPSDYGRPLS(1)FPPPR;GLPSDYGRPLS(1)FPPPR ; 111.66 8.60E-05 398260000 454610 581150 557100 168028 638710 442940 507120 529440 407140 378540 TRUE FALSE FALSE 422744.1866 535097.5575 772824.0397 391177.6757 558597.0361 388294.5663 380233.2122 408898.0696 442431.223 283751.1201 1.489841472 1.885798926 2.723598199 1.378594296 1.968616144 1.368433598 1.340023652 1.441044777 1.559222825 1 18.11426656 -6.132504241 1.464204843 1.351830824 1.958739166 0.345663084 0.365974728 0.48065857 2.080904348 0.15801976 0.158559275 7.37E-07 6.132504241 0.606908342 GLPSPYNMSS(ph)APGS(ph)R ddPTM_HeLa_A485_30min_R1 4 GLPSPYNMSSAPGSR 15 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 2 0 GLPSPYNMS(0.014)S(0.986)APGS(1)R;GLPSPYNMS(0.063)S(0.937)APGS(1)R;GLPSPYNMS(0.032)S(0.968)APGS(1)R;GLPSPYNMS(0.013)S(0.987)APGS(1)R ;;; 170.09 7.22E-12 1360170000 861770 1261550 1272580 822790 1239060 1134620 1312570 1383380 931580 1064480 TRUE FALSE FALSE 1053467.763 1409077.298 1743360.298 867736.9343 1115694.836 1194026.949 1032128.697 1044103.886 1118539.561 799124.7263 1.318277021 1.763275809 2.18158723 1.085859198 1.396146057 1.494168444 1.291573972 1.306559354 1.399705858 1 19.60806117 -6.834217412 0.220390823 0.935241267 1.844069973 0.28605869 0.271432611 4.104764029 0.700763466 0.876697885 1.383522095 1.46E-07 6.834217412 0.908828706 GLPSPYNMSS(ph)APGS(ph)R ddPTM_HeLa_A486_30min_R1 4 GLPSPYNMSSAPGSR 15 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 2 0 GLPSPYNMS(0.064)S(0.936)APGS(1)R;GLPSPYNMS(0.011)S(0.989)APGS(1)R;GLPSPYNMS(0.002)S(0.998)APGS(1)R;GLPSPYNMS(0.003)S(0.997)APGS(1)R ;;; 218.12 3.60E-33 908260000 1785340 1994350 1889420 653840 2254500 1648180 1975080 2035420 1660170 1989570 TRUE FALSE FALSE 1660196.886 1836310.443 2621054.024 1522172.563 1971719.588 1444844.309 1480894.094 1571999.299 1804074.872 1491368.722 1.113203503 1.231292044 1.757482228 1.020654745 1.32208726 0.968804218 0.9929765 1.054064817 1.209677289 1 20.50820556 GLPSPYNMSS(ph)APGSR ddPTM_HeLa_A485_30min_R1 1 GLPSPYNMSSAPGSR 15 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 GLPSPYNMS(0.047)S(0.949)APGS(0.004)R 112.96 0.00019103 222920000 69200 109610 108040 83597 116720 112500 113850 118940 87488 108620 TRUE FALSE FALSE 84593.30126 122427.936 148008.4919 88163.69243 105098.947 118390.326 89525.01743 89769.77851 105046.0391 81543.033 1.037406853 1.501390511 1.815096722 1.081192215 1.288877089 1.451875429 1.097886774 1.100888392 1.288228255 1 16.315274 -6.897974431 0.615566574 1.063535977 1.408798934 0.188021942 0.221672161 1.31282026 1.001019169 0.209500375 0.139116262 1.26E-07 6.897974431 0.345262957 GLPSPYNMSS(ph)APGSR ddPTM_HeLa_A486_30min_R1 1 GLPSPYNMSSAPGSR 15 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 GLPSPYNMS(0.029)S(0.971)APGSR 164.66 5.72E-12 117380000 147170 150960 128740 56823 173500 121430 149660 161420 123310 176410 TRUE FALSE FALSE 136854.143 138997.3798 178591.5758 132286.8157 151738.0122 106449.2012 112213.4851 124668.1898 133998.6101 132235.7878 1.034925154 1.051132845 1.350554028 1.000385886 1.147480684 0.804995403 0.848586354 0.942771937 1.013330902 1 17.01275315 -6.246917253 24.87731356 0.913775754 1.119750487 0.452628076 0.106986134 690.8414075 1183455.177 0.035961007 0.035809279 5.66E-07 6.246917253 0.205974733 GLPSTAS(ph)GR ddPTM_HeLa_A485_30min_R1 2 GLPSTASGR 9 0 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GLPSTAS(1)GR;GLPSTAS(1)GR ; 156.83 3.24E-05 1260020000 650150 1112420 1070800 654670 1146510 1000680 1014370 1166800 951770 946220 TRUE FALSE FALSE 794773.6245 1242507.842 1466933.48 690432.9644 1032359.439 1053074.057 797641.5629 880640.4705 1142781.509 710344.7679 1.118856167 1.749161672 2.065100703 0.971968818 1.453321662 1.482483021 1.122893557 1.239736689 1.60877022 1 19.43815989 -5.270492571 24.99656775 1.288998217 1.654851743 0.257729547 0.29072801 900.0206256 2485025.937 0.081273337 0.12250698 5.36E-06 5.270492571 0.365853526 GLPSTAS(ph)GR ddPTM_HeLa_A486_30min_R1 2 GLPSTASGR 9 0 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GLPSTAS(1)GR;GLPSTAS(1)GR ; 155.06 4.28E-05 1608780000 1408890 1608910 1471020 416120 1792890 1249280 1440970 1526380 1363400 1366410 TRUE FALSE FALSE 1310134.087 1481414.112 2040638.339 968748.3895 1568009.018 1095156.535 1080424.065 1178856.595 1481580.61 1024252.042 1.279112984 1.446337475 1.992320499 0.945810552 1.530882003 1.06922563 1.054841992 1.150943856 1.44650003 1 19.96613934 -5.281336371 24.99663165 1.183354416 1.559965139 0.363692606 0.242771243 893.833957 1122923.411 0.067626884 0.100455345 5.23E-06 5.281336371 0.376610723 GLQIIGT(ph)Y(ph)AQTEMGHVGK ddPTM_HeLa_A486_30min_R1 1 GLQIIGTYAQTEMGHVGK 18 0 K7ELT1 K7ELT1 ACOX1 2 0 GLQIIGT(0.629)Y(0.742)AQT(0.629)EMGHVGK 65.784 0.01062 138410000 287250 106640 66049 60529 112530 70623 83524 71666 38084 69237 TRUE FALSE FALSE 267115.2584 98189.45802 91624.94165 140914.571 98415.4381 61910.2523 62625.41177 55349.21626 41385.15178 51899.60454 5.146768664 1.891911487 1.765426586 2.715137663 1.896265665 1.192884856 1.206664527 1.066467013 0.797407844 1 15.66343593 -1.862849596 0.813395751 1.32989418 200 0.810049873 0.532270196 52.72113881 0.826109854 0.205804769 18521.6187 0.013713566 1.862849596 198.6701058 GLQLT(ph)PGIGGMQQHFFDDEDR ddPTM_HeLa_A485_30min_R1 4 GLQLTPGIGGMQQHFFDDEDR 21 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR ;;; 228.76 7.54E-36 703489000 393661 513385 486846 303260 338762 400302 370679 248801 266659 360655 TRUE FALSE FALSE 481229.5313 573420.9099 666950.5948 319826.3259 305033.6658 421261.1937 291480.4035 187782.1646 320175.0154 270750.3459 1.77739212 2.117895392 2.463341617 1.181259159 1.126623365 1.555902698 1.076565212 0.693562049 1.182547023 1 18.04660366 -5.280562122 19.50922116 1.120916143 2.119377196 0.769919456 0.251231432 22.31591151 22766.89584 0.074940778 0.111661132 5.24E-06 5.280562122 0.998461053 GLQLT(ph)PGIGGMQQHFFDDEDR ddPTM_HeLa_A486_30min_R1 3 GLQLTPGIGGMQQHFFDDEDR 21 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR ;; 223.57 1.51E-35 355430000 353286 297312 227691 71564.6 285544 252661 255699 232845 299889 324200 TRUE FALSE FALSE 328522.4758 273751.9143 315859.053 166606.0055 249728.4089 221490.2547 191720.4057 179831.2765 325883.62 243018.2098 1.351843041 1.126466673 1.299734095 0.685570047 1.027611919 0.91141423 0.788913744 0.739990952 1.340984366 1 17.8907049 -5.240817586 24.81146259 0.914641101 1.246059854 0.410536972 0.181379359 719.9700819 866242.9592 0.047522746 0.082185961 5.74E-06 5.240817586 0.331418753 GLQPGEEELPDIS(ph)PPIVIPDDSKDR ddPTM_HeLa_A486_30min_R1 2 GLQPGEEELPDISPPIVIPDDSKDR 25 1 Q92995-2;Q92995 Q92995-2 USP13 Ubiquitin carboxyl-terminal hydrolase 13 1 0 GLQPGEEELPDIS(1)PPIVIPDDSKDR;GLQPGEEELPDIS(1)PPIVIPDDSKDR ; 137.88 8.10E-07 208710000 119786 126859 88716 58906 139967 132459 171805 152507 106137 178437 TRUE FALSE FALSE 111389.62 116806.2308 123069.2111 137136.1449 122411.0337 116117.5553 128817.5718 117784.4853 115337.0406 133755.2138 0.832787125 0.873283572 0.920107767 1.025277005 0.915187007 0.868134797 0.96308449 0.880597339 0.8622994 1 17.0292356 -4.600419549 3.016681071 0.927068374 0.838100262 0.276592825 0.051295123 0.36100556 6.269161176 0.013924485 0.052598888 2.51E-05 4.600419549 -0.088968112 GLQT(ph)PVKDAGGGTGR ddPTM_HeLa_A485_30min_R1 4 GLQTPVKDAGGGTGR 15 1 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 GLQT(1)PVKDAGGGTGR;GLQT(1)PVKDAGGGTGR;GLQT(1)PVKDAGGGTGR;GLQT(1)PVKDAGGGTGR ;;; 128.38 2.60E-05 6068000000 1423910 1506850 1303500 1588910 2002000 1752490 2256000 2559070 1366000 1962320 TRUE FALSE FALSE 1740653.867 1683063 1785718.893 1675708.13 1802673.851 1844247.667 1773987.17 1931454.07 1640143.67 1473149.738 1.181586517 1.142492821 1.21217745 1.137500206 1.223686774 1.251907813 1.20421375 1.311105056 1.113358424 1 20.49047265 -8.003526106 24.92115438 0.999999995 1.205951681 0.653527375 0.047782638 65.98998788 466395.723 0.04736342 0.012229182 9.92E-09 8.003526106 0.205951686 GLQT(ph)PVKDAGGGTGR ddPTM_HeLa_A486_30min_R1 4 GLQTPVKDAGGGTGR 15 1 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 GLQT(1)PVKDAGGGTGR;GLQT(1)PVKDAGGGTGR;GLQT(1)PVKDAGGGTGR;GLQT(1)PVKDAGGGTGR ;;; 159.26 4.37E-09 5479420000 1708170 1500480 1181120 655950 1825970 1617410 2009040 2001960 1258600 1989050 TRUE FALSE FALSE 1588436.104 1381576.5 1638481.295 1527084.75 1596939.816 1417870.399 1506356.943 1546157.41 1367696.461 1490978.933 1.065364552 0.926623756 1.098929877 1.024216181 1.071067995 0.950966085 1.010314035 1.03700822 0.91731441 1 20.50782844 -6.262260139 24.99995563 0.987133158 1.033798716 0.206626878 0.052515629 143.7575027 4378722.218 0.017528264 0.016346546 5.47E-07 6.262260139 0.046665558 GLQTSQDAR ddPTM_HeLa_A485_30min_R1 2 GLQTSQDAR 9 0 P27797 P27797 CALR Calreticulin 0 0 ; ; 163.16 9.82E-06 37256000 31913 41503 51157 34102 53305 39549 40538 33102 52668 52627 FALSE FALSE TRUE 39011.93675 46356.41482 70082.10312 35964.90591 47997.76703 41619.72449 31876.72513 24983.6826 63237.9845 39508.05743 0.987442544 1.173340778 1.773868615 0.910318255 1.214885524 1.053449023 0.806841116 0.632369299 1.600635127 1 15.26985929 GLQVDLQS(ph)DGAAAEDIVASEQSLGQK ddPTM_HeLa_A485_30min_R1 1 GLQVDLQSDGAAAEDIVASEQSLGQK 26 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 GLQVDLQS(1)DGAAAEDIVASEQSLGQK 140.41 4.37E-07 74205000 48921 60277 46757 50033 63326 55520 70651 73050 53145 71455 TRUE FALSE FALSE 59803.30767 67325.87081 64054.36002 52766.1761 57021.04109 58426.94135 55555.83668 55134.37296 63810.71403 53642.58353 1.11484764 1.255082555 1.194095359 0.983662095 1.062980888 1.089189549 1.035666685 1.027809798 1.189553333 1 15.7110911 -5.23920396 23.80403119 1.057593086 1.194715979 0.487150636 0.062140889 350.7496998 375492.0229 0.016267473 0.028138356 5.76E-06 5.23920396 0.137122892 GLRYS(ph)LPTPK ddPTM_HeLa_A485_30min_R1 2 GLRYSLPTPK 10 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 GLRY(0.003)S(0.996)LPT(0.001)PK;GLRY(0.003)S(0.996)LPTPK ; 48.625 0.025387 274820000 327750 362130 312650 330620 429310 393830 499350 576040 352130 464940 TRUE FALSE FALSE 400656.8568 404477.9534 428312.2455 348680.9334 386566.389 414450.3298 392659.7932 434765.2868 422799.2611 349039.0146 1.147885595 1.158833072 1.227118538 0.998974094 1.107516274 1.187404022 1.124973934 1.245606562 1.211323787 1 18.41302878 -6.261965543 24.86710308 1.167406587 1.128106024 0.011096357 0.081551949 162.0493225 7658246.86 0.027968555 0.026133972 5.47E-07 6.261965543 -0.039300563 GLRYS(ph)LPTPK ddPTM_HeLa_A486_30min_R1 1 GLRYSLPTPK 10 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 GLRY(0.001)S(0.999)LPTPK 74.537 0.0053958 155050000 328940 344100 229760 147580 343330 290770 385190 410200 260980 417230 TRUE FALSE FALSE 305883.0046 316832.2628 318729.2252 343573.6983 300266.35 254897.7537 288811.3879 316806.4146 283601.9565 312752.8923 0.978034136 1.01304343 1.019108801 1.09854683 0.960075374 0.815013258 0.923449135 1.012960783 0.906792434 1 18.2546637 -5.987776415 24.54645996 0.927008076 1.026060908 0.378181718 0.057843264 194.5913484 390760.1749 0.018532983 0.020999684 1.03E-06 5.987776415 0.099052832 GLS(ph)EDTTEETLKESFDGSVR ddPTM_HeLa_A485_30min_R1 1 GLSEDTTEETLKESFDGSVR 20 1 P19338;H7BY16 P19338 NCL Nucleolin 1 0 GLS(0.959)EDT(0.018)T(0.018)EET(0.002)LKES(0.002)FDGSVR 40.682 0.034946 65870000 62432 58406 45337 72687 75495 62159 74345 79834 42499 95804 TRUE FALSE FALSE 76319.78301 65236.07364 62109.04293 76657.70676 67978.45272 65413.54912 58460.58341 60254.58633 51028.15948 71921.82594 1.06114913 0.907041399 0.863563211 1.065847617 0.945171397 0.909509016 0.812835084 0.837778874 0.709494772 1 16.13414203 -6.54704309 2.676929985 0.826123444 0.964330515 0.313712611 0.088249913 0.322567533 4.687399442 0.035952423 0.027829567 2.84E-07 6.54704309 0.138207071 GLS(ph)EGR ddPTM_HeLa_A485_30min_R1 5 GLSEGR 6 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5;A5PLN7;A5PLN7-4;A5PLN7-3 O75369-8 FLNB;FAM149A Filamin-B;Protein FAM149A 1 0 GLS(1)EGR;GLS(1)EGR;GLS(1)EGR;GLS(1)EGR;GLS(1)EGR ;;;; 92.47 0.014915 4083930000 5829890 7668840 7063850 5503180 9139130 6635760 8431840 9109110 7406310 7376370 TRUE FALSE FALSE 7126728.918 8565644.128 9677062.066 5803804.789 8229206.128 6983198.133 6630308.502 6875086.49 8892688.482 5537576.711 1.286976107 1.546821755 1.747526503 1.048076639 1.486066299 1.261056685 1.197330321 1.241533409 1.605880866 1 22.40082335 -5.259644646 24.99952986 1.279409144 1.52907947 0.267624189 0.199005397 226.5166657 3155213.882 0.053242946 0.086552816 5.50E-06 5.259644646 0.249670326 GLS(ph)EGR ddPTM_HeLa_A486_30min_R1 5 GLSEGR 6 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5;A5PLN7;A5PLN7-4;A5PLN7-3 O75369-8 FLNB;FAM149A Filamin-B;Protein FAM149A 1 0 GLS(1)EGR;GLS(1)EGR;GLS(1)EGR;GLS(1)EGR;GLS(1)EGR ;;;; 113.89 0.0080473 2619721000 3432400 4272220 4555250 1674144 5369840 4551220 5148320 4878230 3530860 3818800 TRUE FALSE FALSE 3191806.485 3933673.728 6319164.794 3897491.839 4696304.595 3989736.75 3860155.883 3767563.52 3836917.788 2862547.624 1.115023016 1.3741863 2.20753176 1.361546549 1.640603131 1.393771309 1.348503637 1.316157499 1.340385661 1 21.44886826 -7.823086028 0.585473643 1.012427495 1.554563089 0.245599974 0.269908183 1.166824716 0.96861753 0.28668319 0.134965213 1.50E-08 7.823086028 0.542135594 GLS(ph)GEEEDDEPDCCNDER ddPTM_HeLa_A485_30min_R1 2 GLSGEEEDDEPDCCNDER 18 0 A0A087WW12;A0A087WZ11;Q6P158-3;Q6P158-2;Q6P158 A0A087WW12 DHX57 Putative ATP-dependent RNA helicase DHX57 1 0 GLS(1)GEEEDDEPDCCNDER;GLS(1)GEEEDDEPDCCNDER ; 387.15 2.50E-145 1477910000 394520 319140 427100 558140 464470 246862 324230 207459 400730 660480 TRUE FALSE FALSE 482279.6129 356460.6469 585102.0631 588629.7749 418225.7359 259787.3126 254955.6118 156579.355 481152.8353 495834.4912 0.972662494 0.71891055 1.180035019 1.187149715 0.843478506 0.523939575 0.514194991 0.315789558 0.970390007 1 18.91949911 -6.042996128 4.932162734 0.616257392 1.007617876 0.328950807 0.230076695 0.216633584 12.3685336 0.076275114 0.078834316 9.06E-07 6.042996128 0.391360484 GLS(ph)GEEEDDEPDCCNDER ddPTM_HeLa_A486_30min_R1 2 GLSGEEEDDEPDCCNDER 18 0 A0A087WW12;A0A087WZ11;Q6P158-3;Q6P158-2;Q6P158 A0A087WW12 DHX57 Putative ATP-dependent RNA helicase DHX57 1 0 GLS(1)GEEEDDEPDCCNDER;GLS(1)GEEEDDEPDCCNDER ; 324.83 4.22E-90 1421570000 416680 972680 745010 284094 803030 757460 761400 743280 752740 615700 TRUE FALSE FALSE 387472.8837 895601.2944 1033497.824 661385.1893 702306.4894 664012.2865 570889.6667 574051.3697 817988.1093 461524.7125 0.839549591 1.940527279 2.239311994 1.433043933 1.521709392 1.438736147 1.23696446 1.24381502 1.772360368 1 18.81604837 -5.490862711 24.95491508 1.387046454 1.72258751 0.108374212 0.381624875 1308.637539 1020017.837 0.107257215 0.158919071 3.23E-06 5.490862711 0.335541056 GLS(ph)GPCRPPPPPQAR ddPTM_HeLa_A485_30min_R1 4 GLSGPCRPPPPPQAR 15 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 0 GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR ;;; 130.38 9.04E-06 2650710000 455291 618253 662310 477514 816740 579884 703290 730860 574488 619219 TRUE FALSE FALSE 556568.9122 690552.3103 907326.03 503599.3807 735422.4979 610245.8296 553026.3461 551615.4391 689782.4721 464859.0992 1.197285184 1.48550886 1.951830203 1.083337686 1.582033135 1.312754404 1.189664453 1.186629325 1.483852792 1 18.82643397 -6.472987091 5.562873762 1.232549429 1.467297825 0.18400812 0.242884647 0.379390409 27.33396728 0.08726095 0.074973106 3.37E-07 6.472987091 0.234748396 GLS(ph)GPCRPPPPPQAR ddPTM_HeLa_A486_30min_R1 4 GLSGPCRPPPPPQAR 15 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 0 GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR ;;; 139.46 1.65E-06 2470230000 520930 656090 559530 197039 731280 520271 611180 632450 495940 578210 TRUE FALSE FALSE 484415.4971 604099.039 776195.0007 458716.7498 639556.0435 456085.2537 458256.2996 488454.9413 538928.4785 433422.4525 1.11765206 1.393788059 1.790850927 1.058359453 1.475595092 1.052288019 1.057297094 1.126971938 1.243425382 1 18.72541437 -6.268050713 24.91611652 1.101513512 1.375096402 0.322550463 0.196308798 634.5193504 2391304.233 0.06848871 0.06176999 5.39E-07 6.268050713 0.273582891 GLS(ph)PAMS(ph)PALQR ddPTM_HeLa_A485_30min_R1 2 GLSPAMSPALQR 12 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 2 0 GLS(1)PAMS(1)PALQR;GLS(1)PAMS(1)PALQR ; 161.04 6.46E-10 295310000 585390 772900 828200 591110 1003720 802540 857200 925310 733330 772970 TRUE FALSE FALSE 715607.9859 863283.9317 1134585.644 623400.8425 903786.1125 844559.7534 674052.2173 698376.2717 880502.6045 580282.8045 1.233205569 1.487695181 1.955228788 1.074305214 1.557492494 1.455427848 1.16159261 1.203510196 1.517368079 1 19.14639665 -9.186747206 0.217285774 0.797616052 1.545426945 0.21411458 0.240243739 14.99042678 1.128437781 2.924933808 0.662181605 6.51E-10 9.186747206 0.747810893 GLS(ph)PAMS(ph)PALQR ddPTM_HeLa_A486_30min_R1 2 GLSPAMSPALQR 12 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 2 0 GLS(1)PAMS(1)PALQR;GLS(1)PAMS(1)PALQR ; 178.68 1.90E-12 329460000 518890 629070 610460 222660 728140 574900 620540 618730 502080 664910 TRUE FALSE FALSE 482518.4906 579220.2022 846846.4607 518363.7326 636809.8916 503974.6832 465274.3286 477858.6858 545600.6987 498412.2082 0.9681113 1.162130848 1.699088519 1.040030168 1.277677154 1.011160391 0.933513106 0.958762001 1.094677638 1 18.92697988 -6.290193811 7.388051131 0.992215129 1.24129147 0.273690613 0.186483873 0.304863737 64.31596138 0.066929416 0.059939649 5.13E-07 6.290193811 0.249076341 GLS(ph)SAGGGSPHREDAQPEHSASAR ddPTM_HeLa_A486_30min_R1 1 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 0 GLS(0.345)S(0.345)AGGGS(0.31)PHREDAQPEHSASAR 83.559 0.0025582 278430000 65209 73876 69185 9421.7 78265 50933 62893 60401 58912 50414 TRUE FALSE FALSE 60638.18584 68021.79671 95975.28484 21934.19375 68448.27391 44649.40431 47156.50619 46649.01084 64018.53959 37790.00626 1.604609045 1.799994322 2.539700157 0.580423131 1.811279772 1.181513546 1.247856533 1.23442718 1.694060042 1 15.20571714 -5.255097749 24.99985271 1.280156568 1.963290435 0.423121804 0.390122301 514.2858206 2027402.124 0.102325204 0.171874091 5.56E-06 5.255097749 0.683133867 GLSAS(ph)LPDLDSENWIEVK ddPTM_HeLa_A485_30min_R1 7 GLSASLPDLDSENWIEVK 18 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 GLS(0.001)AS(0.999)LPDLDSENWIEVK;GLS(0.003)AS(0.997)LPDLDSENWIEVK;GLSAS(1)LPDLDSENWIEVK;GLS(0.013)AS(0.987)LPDLDSENWIEVK;GLS(0.006)AS(0.994)LPDLDSENWIEVK;GLS(0.008)AS(0.992)LPDLDSENWIEVK;GLSAS(1)LPDLDSENWIEVK ;;;;;; 332.61 1.45E-101 5705540000 2106064.8 2091299 1882009.4 2448658 2587538 2302801.6 3126331 3174522 2035366 3107719 TRUE FALSE FALSE 2574551.649 2335858.226 2578242.994 2582421.986 2329913.631 2423372.731 2458364.842 2395965.502 2443845.287 2333021.847 1.103526593 1.001215754 1.105108809 1.106900045 0.99866773 1.038726977 1.053725599 1.026979454 1.047502101 1 21.15376839 -5.760883868 24.99998884 1.030811883 1.075469866 0.362407188 0.033212556 19.6372281 883696.115 0.010080325 0.012243541 1.73E-06 5.760883868 0.044657983 GLSAS(ph)LPDLDSENWIEVK ddPTM_HeLa_A486_30min_R1 7 GLSASLPDLDSENWIEVK 18 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 GLS(0.024)AS(0.976)LPDLDSENWIEVK;GLS(0.001)AS(0.999)LPDLDSENWIEVK;GLSAS(1)LPDLDSENWIEVK;GLS(0.001)AS(0.999)LPDLDSENWIEVK;GLS(0.003)AS(0.997)LPDLDSENWIEVK;GLS(0.002)AS(0.998)LPDLDSENWIEVK;GLS(0.035)AS(0.965)LPDLDSENWIEVK ;;;;;; 340.82 4.89E-102 8509253000 2293372 2023944 1459625 914482 2183670 2218978 2608987 2393025 1856031 2569574 TRUE FALSE FALSE 2132618.466 1863559.306 2024830.89 2128960.311 1909773.747 1945223.055 1956190.858 1848185.447 2016913.261 1926135.945 1.107200388 0.967511826 1.051239864 1.105301169 0.991505169 1.009909534 1.015603734 0.959530116 1.047129236 1 20.8772781 -5.811909242 24.99993833 1.002803788 1.050894252 0.281447812 0.041557755 154.3295899 76445.34987 0.012681341 0.014379308 1.54E-06 5.811909242 0.048090463 GLSAS(ph)LPDLDSENWIEVKK ddPTM_HeLa_A485_30min_R1 2 GLSASLPDLDSENWIEVKK 19 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 GLS(0.013)AS(0.987)LPDLDSENWIEVKK;GLSAS(1)LPDLDSENWIEVKK ; 226.24 3.71E-35 214472000 192685 250620 162294 153285 276040 275870 350400 472720 190669 225032 TRUE FALSE FALSE 235547.1135 279927.8289 222333.3042 161658.5714 248556.4884 290314.1266 275534.1775 356784.6788 228934.5194 168935.6638 1.394300695 1.657008488 1.316082698 0.956923883 1.471308561 1.718489276 1.63100065 2.111955941 1.355158018 1 17.3661144 -6.00301549 24.97296986 1.63236481 1.33589195 0.090544086 0.310594979 225.2747873 1865653.835 0.096359901 0.107250384 9.93E-07 6.00301549 -0.29647286 GLSAS(ph)LPDLDSENWIEVKK ddPTM_HeLa_A486_30min_R1 4 GLSASLPDLDSENWIEVKK 19 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 GLS(0.001)AS(0.999)LPDLDSENWIEVKK;GLSAS(1)LPDLDSENWIEVKK;GLS(0.005)AS(0.995)LPDLDSENWIEVKK;GLS(0.123)AS(0.877)LPDLDSENWIEVKK ;;; 222.46 5.54E-35 2146993000 2518443 1833604 1259581 942307 2446459 1857564 2696929 2529316 1394587 2878639 TRUE FALSE FALSE 2341913.151 1688302.541 1747324.496 2193738.318 2139601.3 1628396.64 2022128.839 1953445.961 1515470.924 2157809.058 1.085319919 0.78241517 0.809767894 1.016650806 0.991561924 0.754652797 0.937121305 0.90529139 0.702319289 1 21.04113578 -6.238753978 24.96940804 0.85878541 0.925887823 0.095308578 0.116449121 2371.391564 2610149.065 0.038499643 0.038472888 5.77E-07 6.238753978 0.067102413 GLSDHVS(ph)LDGQELGTR ddPTM_HeLa_A485_30min_R1 4 GLSDHVSLDGQELGTR 16 0 Q7L8J4;Q7L8J4-2 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 0 GLS(0.002)DHVS(0.998)LDGQELGTR;GLSDHVS(1)LDGQELGTR;GLSDHVS(1)LDGQELGTR;GLSDHVS(1)LDGQELGTR ;;; 319.09 1.34E-78 3356200000 1599758 2508198 2780431 1464233 2820373 2096290 2564499 2782906 2359639 2091926 TRUE FALSE FALSE 1955618.648 2801509.938 3809028.13 1544220.341 2539566.761 2206048.503 2016572.839 2100393.94 2833196.903 1570447.347 1.245262155 1.783892941 2.425441475 0.983299659 1.61709768 1.40472618 1.284075421 1.33744945 1.804069973 1 20.58274414 -5.280570582 24.99812596 1.372312693 1.814768423 0.270439898 0.352781296 1107.018982 1446503.658 0.098222123 0.14594817 5.24E-06 5.280570582 0.44245573 GLSDHVS(ph)LDGQELGTR ddPTM_HeLa_A486_30min_R1 3 GLSDHVSLDGQELGTR 16 0 Q7L8J4;Q7L8J4-2 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 0 GLSDHVS(1)LDGQELGTR;GLSDHVS(1)LDGQELGTR;GLSDHVS(1)LDGQELGTR ;; 293.08 1.41E-67 2238440000 1437140 1695810 1785970 188224 2061800 1412510 1620850 1658370 1433140 1267270 TRUE FALSE FALSE 1336403.907 1561427.84 2477545.414 438194.9843 1803189.818 1238248.878 1215296.186 1280795.353 1557365.729 949937.3435 1.406833742 1.643716662 2.608114557 0.461288302 1.898219741 1.303505843 1.279343522 1.34829456 1.639440475 1 19.85747283 -5.254317639 24.99528337 1.317485039 1.861971044 0.26900415 0.457044061 829.2840672 2910544.206 0.120577475 0.2033651 5.57E-06 5.254317639 0.544486005 GLSEDTTEETLKESFDGSVR ddPTM_HeLa_A485_30min_R1 1 GLSEDTTEETLKESFDGSVR 20 1 P19338;H7BY16 P19338 NCL Nucleolin 0 0 121.44 3.45E-07 20792000 14949 16052 15850 20144 28146 21053 28766 31139 18419 29071 FALSE FALSE TRUE 18274.35348 17929.14177 21713.57457 21244.41571 25343.68541 22155.30253 22619.9091 23502.11143 22115.52435 21824.13471 0.837346072 0.821528184 0.994934043 0.973436793 1.16126874 1.015174385 1.036463044 1.076886288 1.013351716 1 14.41363683 -4.887059073 1.939313374 1.04813059 0.816313062 0.728001624 0.050081552 0.168452902 1.223346812 0.013981455 0.044902639 1.30E-05 4.887059073 -0.231817529 GLSEEER ddPTM_HeLa_A485_30min_R1 1 GLSEEER 7 0 Q8N998 Q8N998 CCDC89 Coiled-coil domain-containing protein 89 0 0 97.596 0.013816 0 128730 205600 197850 106150 204320 158620 163990 196690 176110 142640 FALSE FALSE TRUE 157365.5444 229643.1315 271042.9482 111948.7057 183977.1834 166925.0979 128952.1968 148451.4691 211453.6616 107082.4731 1.46957331 2.144544526 2.531160706 1.045443783 1.718088666 1.558846122 1.204232524 1.386328358 1.974680408 1 16.70836284 -5.265943087 24.99130063 1.438764812 2.05803801 0.382579375 0.369084992 397.9235973 2208100.606 0.101818871 0.157036244 5.42E-06 5.265943087 0.619273198 GLSHS(ph)PWAVK ddPTM_HeLa_A485_30min_R1 2 GLSHSPWAVK 10 0 Q96KB5;Q96KB5-2;E5RFX4 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 GLS(0.001)HS(0.999)PWAVK;GLS(0.001)HS(0.999)PWAVK ; 144.28 4.17E-06 896930000 1403290 1396150 1352380 1702460 1936680 1479690 1776250 1822300 1403460 2129260 TRUE FALSE FALSE 1715447.019 1559417.598 1852681.639 1795461.079 1743857.339 1557164.28 1396739.677 1375378.068 1685121.549 1598474.668 1.073177482 0.975566037 1.159030966 1.12323399 1.090950876 0.97415637 0.873795315 0.86043157 1.054205977 1 20.60826445 -6.359667068 3.98931927 0.934464285 1.084752476 0.477479342 0.068693686 0.201348057 5.745195467 0.025839752 0.022645453 4.37E-07 6.359667068 0.150288191 GLSHS(ph)PWAVK ddPTM_HeLa_A486_30min_R1 2 GLSHSPWAVK 10 0 Q96KB5;Q96KB5-2;E5RFX4 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 GLS(0.013)HS(0.987)PWAVK;GLS(0.007)HS(0.993)PWAVK ; 107.09 0.00064917 1327520000 4516300 4113740 2948870 2247290 4920620 4937310 6612400 6524680 3457720 6735740 TRUE FALSE FALSE 4199730.692 3787752.26 4090751.437 5231804.692 4303429.957 4328194.891 4957907.581 5039152.797 3757437.954 5049066.862 0.831783537 0.750188572 0.810199498 1.036192397 0.85232184 0.857226693 0.981945321 0.998036456 0.74418463 1 22.26758535 -5.030465341 23.10196569 0.920986361 0.788288025 0.318866256 0.085176692 288.0472338 218427.6556 0.022457412 0.038991332 9.32E-06 5.030465341 -0.132698336 GLSHS(ph)PWAVKK ddPTM_HeLa_A485_30min_R1 2 GLSHSPWAVKK 11 1 Q96KB5;Q96KB5-2;E5RFX4 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 GLS(0.124)HS(0.876)PWAVKK;GLSHS(1)PWAVKK ; 177.81 2.36E-09 1504430000 2110770 2044440 1439560 2160160 2848000 2646100 3176300 3874700 1917510 2662200 TRUE FALSE FALSE 2580303.504 2283519.474 1972113.149 2278164.071 2564443.12 2784645.704 2497657.557 2924423.75 2302336.669 1998562.534 1.291079694 1.142580947 0.986765796 1.13990132 1.283143798 1.39332428 1.249726998 1.463263571 1.151996312 1 20.93053128 -5.753471299 6.318429846 1.286941115 1.128460693 0.123442611 0.138238036 0.227335915 36.45072769 0.040553286 0.04987319 1.76E-06 5.753471299 -0.158480422 GLSHS(ph)PWAVKK ddPTM_HeLa_A486_30min_R1 2 GLSHSPWAVKK 11 1 Q96KB5;Q96KB5-2;E5RFX4 Q96KB5 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 GLS(0.007)HS(0.993)PWAVKK;GLS(0.024)HS(0.976)PWAVKK ; 204.13 5.27E-15 1341770000 2880500 2613200 1534030 1021570 2739500 2557100 3232500 3139000 1804720 3326100 TRUE FALSE FALSE 2678591.825 2406120.515 2128047.499 2378266.587 2395886.365 2241631.001 2423694.31 2424318.224 1961154.583 2493222.911 1.074349114 0.965064337 0.853532787 0.953892481 0.96095955 0.899089685 0.972112963 0.972363206 0.786594161 1 21.24958044 -4.326766607 3.638898488 0.926149229 1.081881874 0.349266855 0.061184631 0.254470625 5.795584636 0.014816647 0.094137813 4.71E-05 4.326766607 0.155732645 GLSIHTFHGNFFVR ddPTM_HeLa_A485_30min_R1 2 GLSIHTFHGNFFVR 14 0 O95486 O95486 SEC24A Protein transport protein Sec24A 0 0 ; ; 210.41 1.61E-16 18367900 8909.6 13981 20252.3 7605.6 15976.2 10945.5 13973.9 12916.2 13315.6 13095.8 FALSE FALSE TRUE 10891.50978 15615.95633 27744.46854 8021.07467 14385.55343 11518.58946 10988.26211 9748.481698 15987.91878 9831.25807 1.107844968 1.588398577 2.822066956 0.815874694 1.463246446 1.171629243 1.117686265 0.991580287 1.626233252 1 13.26316033 GLSIHTFHGNFFVR ddPTM_HeLa_A486_30min_R1 1 GLSIHTFHGNFFVR 14 0 O95486 O95486 SEC24A Protein transport protein Sec24A 0 0 54.524 0.035973 6662400 4932.7 5779.3 5160.9 3091.6 7071.1 5316.4 6274.5 6252.6 4511.9 6369.5 FALSE FALSE TRUE 4586.943202 5321.32722 7159.338694 7197.401041 6184.176703 4660.516621 4704.553735 4829.019473 4902.995125 4774.535742 0.960709784 1.114522439 1.499483736 1.507455684 1.295241472 0.976119328 0.985342657 1.011411315 1.026905105 1 12.22114474 -6.258929415 24.03505293 0.999755564 1.291872308 0.447829 0.152430662 134.105751 1284181.188 0.057707342 0.055140277 5.51E-07 6.258929415 0.292116743 GLSLVDKENT(ph)PPALSGTR ddPTM_HeLa_A485_30min_R1 3 GLSLVDKENTPPALSGTR 18 1 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 0 GLSLVDKENT(0.993)PPALS(0.005)GT(0.002)R;GLSLVDKENT(1)PPALSGTR;GLSLVDKENT(1)PPALSGTR ;; 105.73 0.0001676 1289110000 798070 681040 680980 1146540 1058800 870070 1140340 1010180 806730 1558770 TRUE FALSE FALSE 975597.9182 760681.7037 932902.8399 1209172.577 953382.1543 915625.5198 896697.0433 762431.7711 968633.3112 1170197.326 0.833703766 0.650045669 0.7972184 1.033306563 0.814719136 0.78245395 0.766278493 0.651541201 0.827752115 1 20.1583204 -11.14046471 2.084414546 1.405952235 0.793135905 0.269158057 0.101176961 8101042.438 1842595.659 15542243.51 0.027781188 7.24E-12 11.14046471 -0.61281633 GLSLVDKENT(ph)PPALSGTR ddPTM_HeLa_A486_30min_R1 3 GLSLVDKENTPPALSGTR 18 1 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 0 GLSLVDKENT(1)PPALSGTR;GLSLVDKENT(1)PPALSGTR;GLSLVDKENT(1)PPALSGTR ;; 126.45 1.36E-05 1858070000 1325670 1220860 822570 559660 1202040 1374090 1629810 1416290 1065680 1792220 TRUE FALSE FALSE 1232747.379 1124114.607 1141091.133 1302916.764 1051268.935 1204568.747 1222014.3 1093831.684 1158054 1343436.447 0.917607515 0.836745653 0.849382296 0.969838779 0.782522268 0.896632475 0.909618243 0.814204265 0.862008771 1 20.35749664 -11.49665144 2.180795408 2.576155578 0.869841903 0.357846908 0.051842456 4147756.041 359838.096 32257858.07 0.012474911 3.19E-12 11.49665144 -1.706313675 GLSSAGGGS(ph)PHREDAQPEHSASAR ddPTM_HeLa_A485_30min_R1 5 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 0 GLS(0.003)S(0.018)AGGGS(0.979)PHREDAQPEHSASAR;GLSSAGGGS(0.999)PHREDAQPEHSASAR;GLS(0.001)S(0.011)AGGGS(0.988)PHREDAQPEHSASAR;GLSSAGGGS(1)PHREDAQPEHSASAR;GLS(0.099)S(0.088)AGGGS(0.813)PHREDAQPEHSASAR ;;;; 280.12 2.45E-75 11050390000 2480695 4379223 4858152 1845580 4938876 3592365 3871671 4485322 3625096 3093523 TRUE FALSE FALSE 3032517.044 4891335.036 6655384.589 1946399.362 4447144.164 3780455.677 3044456.862 3385289.747 4352619.516 2322364.648 1.305788497 2.106187346 2.865779323 0.838111002 1.914920711 1.627847582 1.31092973 1.457690871 1.874218814 1 21.14716309 -5.269171414 24.99958787 1.474272742 2.093945296 0.2864852 0.474486493 779.5558914 2520497.569 0.131639648 0.199538173 5.38E-06 5.269171414 0.619672554 GLSSAGGGS(ph)PHREDAQPEHSASAR ddPTM_HeLa_A486_30min_R1 5 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 0 GLSSAGGGS(1)PHREDAQPEHSASAR;GLS(0.014)S(0.064)AGGGS(0.922)PHREDAQPEHSASAR;GLSSAGGGS(1)PHREDAQPEHSASAR;GLS(0.014)S(0.064)AGGGS(0.922)PHREDAQPEHSASAR;GLS(0.178)S(0.156)AGGGS(0.666)PHREDAQPEHSASAR ;;;; 281.49 2.09E-75 10209880000 4167464 4637155 4571656 277860.94 5369160 3378309 4073677 4045304 4036535 2965306 TRUE FALSE FALSE 3875346.294 4269689.95 6341923.636 646874.3106 4695709.887 2961527.584 3054399.928 3124276.588 4386425.104 2222774.077 1.743472868 1.920883456 2.853157099 0.291021169 2.112544832 1.332356543 1.374138721 1.405575412 1.973401233 1 21.08392989 -5.240084873 24.99930723 1.403821888 2.147342203 0.319468829 0.542832176 1041.813306 1219629.16 0.140842997 0.243662466 5.75E-06 5.240084873 0.743520315 GLSTS(ph)LPDLDSEPWIEVK ddPTM_HeLa_A486_30min_R1 1 GLSTSLPDLDSEPWIEVK 18 0 A0A3B3ISF0;Q659C4-9;Q659C4;H0Y9K3;D6R9W6;Q659C4-2;D6RJB0;Q659C4-4 A0A3B3ISF0 LARP1B La-related protein 1B 1 0 GLS(0.016)T(0.016)S(0.969)LPDLDSEPWIEVK 160.81 1.70E-11 0 21902 24964 15320 9449.8 25962 22705 29529 25450 17755 29221 TRUE FALSE FALSE 20366.7829 22985.76172 21252.31428 21999.61197 22705.60387 19903.88795 22140.53187 19655.59057 19294.0177 21903.8714 0.929825716 1.049392653 0.970253792 1.004370943 1.036602318 0.908692696 1.010804504 0.89735692 0.880849661 1 14.41889826 -7.262851929 24.96386962 0.916827466 0.988428472 0.228706064 0.05050324 155.4024409 2746347.405 0.024591065 0.012834396 5.46E-08 7.262851929 0.071601007 GLT(ph)LAQGGVK ddPTM_HeLa_A486_30min_R1 1 GLTLAQGGVK 10 0 A0A1B0GVU9;A0A0U1RR79 A0A1B0GVU9 1 0 GLT(1)LAQGGVK 63.966 0.028306 161280000 557200 628540 432200 243340 614260 625500 777840 616840 460900 488830 TRUE FALSE FALSE 518143.1574 578732.2013 599559.4147 566507.8177 537213.7831 548332.1696 583216.2048 476398.9975 500851.1831 366423.7863 1.414054373 1.57940675 1.636245891 1.546045423 1.466099645 1.496442617 1.591643956 1.300131202 1.366863184 1 18.48315363 -8.163945705 0.732820502 0.998173444 1.544985403 0.81192917 0.076998304 0.358380599 0.417974383 0.07673178 0.028796082 6.86E-09 8.163945705 0.546811958 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR ddPTM_HeLa_A485_30min_R1 3 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR 33 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 0 ;; ;; 120.57 5.88E-06 598837000 164480 216704 252096 171352 290098 190129 231119 271290 228044 249470 FALSE FALSE TRUE 201068.0086 242045.6477 345356.801 180712.5259 261214.8245 200083.8604 181738.5376 204755.7021 273810.3391 187281.7202 1.073612568 1.292414698 1.844049706 0.964923462 1.394769464 1.068357661 0.970401903 1.09330319 1.462023837 1 17.51485057 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR ddPTM_HeLa_A486_30min_R1 5 GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR 33 0 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 0 ;;;; ;;;; 234.87 9.69E-51 656169000 243060.3 249635.2 266386.7 56582.1 321057 215453.3 237810 257334.9 222602.8 190904.1 FALSE FALSE TRUE 226023.0281 229853.1976 369538.7643 131725.9883 280787.0373 188872.8624 178307.4227 198745.3609 241898.1899 143100.4708 1.579470891 1.606236488 2.582372806 0.920514011 1.962167111 1.319861922 1.246029602 1.388851901 1.690408065 1 17.12666889 -5.277706276 24.96159343 1.395850388 1.891047827 0.306219281 0.383994648 1040.775698 1597070.329 0.105177875 0.156532311 5.28E-06 5.277706276 0.49519744 GLTLAPGLS(ph)PARPLFGSDFEK ddPTM_HeLa_A485_30min_R1 2 GLTLAPGLSPARPLFGSDFEK 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 GLTLAPGLS(1)PARPLFGSDFEK;GLTLAPGLS(1)PARPLFGSDFEK ; 194.82 2.80E-20 1245560000 717580 726810 574100 731960 755880 693870 819420 877850 618010 925240 TRUE FALSE FALSE 877203.1954 811804.1071 786483.4803 771945.1214 680621.9331 730199.9603 644344.223 662555.9111 742038.9383 694594.6958 1.262899358 1.168745042 1.132291227 1.111360519 0.979883574 1.05126049 0.927654972 0.95387413 1.068304931 1 19.40581187 -4.990105522 0.766210637 0.985005909 1.285993251 0.799932578 0.044613073 0.502812564 0.429847189 0.020085896 0.110217567 1.02E-05 4.990105522 0.300987341 GLTLAPGLS(ph)PARPLFGSDFEK ddPTM_HeLa_A486_30min_R1 1 GLTLAPGLSPARPLFGSDFEK 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 GLTLAPGLS(1)PARPLFGSDFEK 113.23 3.19E-05 489370000 91446 95548 61620 37933 82189 93545 94124 89310 72499 116840 TRUE FALSE FALSE 85036.10763 87976.4285 85480.91424 88309.94103 71880.08924 82004.369 70573.17966 68976.06262 78783.27169 87582.5035 0.970925747 1.004497759 0.976004462 1.00830574 0.820712886 0.936309945 0.805790847 0.787555275 0.899532082 1 16.41835507 -5.754474231 24.99945487 0.863967956 0.989978831 0.45440404 0.060993734 133.9645113 480825.7314 0.017574635 0.022190524 1.76E-06 5.754474231 0.126010875 GLTLAPGLS(ph)PARPLFGSDFEKEK ddPTM_HeLa_A485_30min_R1 2 GLTLAPGLSPARPLFGSDFEKEK 23 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 GLTLAPGLS(1)PARPLFGSDFEKEK;GLT(0.007)LAPGLS(0.991)PARPLFGS(0.002)DFEKEK ; 133.75 7.92E-07 373140000 179604 172735 173111 324696 482790 372720 581670 861760 257060 497230 TRUE FALSE FALSE 219556.2902 192934.8557 237151.9626 342433.3203 434721.7324 392235.0429 457391.4527 650412.0088 308649.5841 373279.7118 0.588181686 0.516864029 0.635319722 0.917363868 1.164600482 1.050780502 1.22533167 1.742425286 0.826858718 1 18.50989757 -5.471654671 1.387380595 1.22435025 0.529499952 0.574451419 0.225356532 0.289685293 1.120924411 0.078572081 0.147973848 3.38E-06 5.471654671 -0.694850298 GLTLAPGLS(ph)PARPLFGSDFEKEK ddPTM_HeLa_A486_30min_R1 1 GLTLAPGLSPARPLFGSDFEKEK 23 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 GLTLAPGLS(1)PARPLFGSDFEKEK 123.36 1.86E-06 160990000 175400 193260 141410 151260 330020 252700 390140 412730 160150 316810 TRUE FALSE FALSE 163105.3658 177945.3738 196167.7391 352140.9243 288625.8143 221524.4433 292522.8455 318760.3888 174031.9309 237478.7139 0.686820992 0.749310836 0.826043462 1.482831528 1.215375515 0.932818102 1.231785539 1.342269307 0.732831706 1 17.85743868 -5.04304573 12.76504832 1.147928338 0.735412571 0.433011272 0.201127985 1.614171804 478.3843622 0.053941379 0.09378591 9.06E-06 5.04304573 -0.412515767 GLTS(ph)VINQK ddPTM_HeLa_A486_30min_R1 2 GLTSVINQK 9 0 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 1 0 GLT(0.007)S(0.993)VINQK;GLT(0.023)S(0.977)VINQK ; 92.611 0.0031395 59107000 291802 289342 205718 137364.2 313899 284407 320312 331938 256666 361651 TRUE FALSE FALSE 271348.1867 266413.4862 285377.5189 319790.7996 274526.8604 249319.756 240166.5497 256362.9636 278914.0155 271091.2356 1.00094784 0.982744741 1.052699171 1.179642709 1.012673316 0.919689474 0.885925172 0.945670423 1.028856632 1 18.04841895 -6.006867054 24.96549396 0.950243517 1.054741452 0.362885412 0.061179094 354.706469 1289558.821 0.020944751 0.022887563 9.84E-07 6.006867054 0.104497934 GLTSVINQK ddPTM_HeLa_A485_30min_R1 2 GLTSVINQK 9 0 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 ; ; 241.52 8.21E-24 107291000 181197 235820 231790 205111 291680 235760 283020 297770 217288 286340 FALSE FALSE TRUE 221503.6475 263397.0976 317538.7666 216315.6946 262639.315 248104.029 222550.4649 224741.4406 260895.7085 214960.7077 1.030437841 1.225326714 1.47719446 1.006303416 1.2218015 1.154183161 1.035307649 1.045500096 1.21369022 1 17.71371345 -6.253369597 1.221079489 1.078498701 1.214238006 0.137654612 0.132199072 0.919432685 2.812679312 0.066969585 0.060766248 5.58E-07 6.253369597 0.135739305 GLTSVINQK ddPTM_HeLa_A486_30min_R1 1 GLTSVINQK 9 0 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 166.3 7.20E-06 17018000 44520 55458 49081 20988 66612 52940 65354 64952 45986 55325 FALSE FALSE TRUE 41399.3779 51063.30611 68086.47763 48861.12467 58256.90183 46408.80105 49001.73796 50163.84749 49972.10351 41471.25989 0.998266703 1.231293822 1.641774998 1.178192435 1.404753605 1.119059348 1.181583055 1.2096051 1.204981562 1 15.33982426 -6.278766368 24.50621958 1.158554703 1.30078367 0.163662964 0.164453699 1305.951145 1847050.356 0.058768633 0.051956698 5.26E-07 6.278766368 0.142228967 GLVAAYS(ph)GDS(ph)DNEEELVER ddPTM_HeLa_A485_30min_R1 2 GLVAAYSGDSDNEEELVER 19 0 P52756 P52756 RBM5 RNA-binding protein 5 2 0 GLVAAYS(1)GDS(1)DNEEELVER;GLVAAY(0.002)S(0.999)GDS(1)DNEEELVER ; 162.65 5.04E-12 698820000 406950 594110 639280 424870 676490 562740 606810 713060 563910 565550 TRUE FALSE FALSE 497474.6235 663585.9964 875776.2747 448079.5723 609136.2803 592204.1962 477160.0863 538180.917 677081.5645 424568.7932 1.171717355 1.562964606 2.062742926 1.055375665 1.434717507 1.394836846 1.123869898 1.267594146 1.594751134 1 18.69563881 -5.296492676 24.99802886 1.28476895 1.595524666 0.249359593 0.262593336 872.9701574 622551.1512 0.073736994 0.109374791 5.05E-06 5.296492676 0.310755716 GLVAAYS(ph)GDS(ph)DNEEELVER ddPTM_HeLa_A486_30min_R1 2 GLVAAYSGDSDNEEELVER 19 0 P52756 P52756 RBM5 RNA-binding protein 5 2 0 GLVAAYS(1)GDS(1)DNEEELVER;GLVAAYS(1)GDS(1)DNEEELVER ; 223.54 1.78E-34 425540000 690010 763200 724440 241900 906290 633410 673240 795050 642380 684160 TRUE FALSE FALSE 641643.8622 702721.2525 1004962.569 563155.4249 792614.6574 555266.3142 504788.2312 614034.4708 698062.0156 512841.8829 1.251153394 1.370249342 1.95959535 1.098107319 1.545534177 1.082724194 0.984296034 1.197317324 1.361164209 1 18.96815456 -6.266901126 24.69488785 1.128632401 1.450103934 0.322493013 0.231694553 487.7228976 2205195.354 0.08078543 0.073293867 5.41E-07 6.266901126 0.321471533 GLVAAYS(ph)GES(ph)DS(ph)EEEQER ddPTM_HeLa_A485_30min_R1 1 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 3 0 GLVAAYS(1)GES(1)DS(1)EEEQER 184.83 6.29E-18 478790000 334870 431530 475870 382560 494130 412980 467370 482450 413150 470130 TRUE FALSE FALSE 409360.6762 481993.6797 651914.1156 403458.2841 444932.6822 434602.9942 367512.5814 364128.381 496065.4154 352935.2431 1.159874748 1.365671718 1.847121047 1.143151023 1.260663793 1.231395852 1.041303153 1.031714424 1.405542306 1 18.42904398 GLVAAYS(ph)GES(ph)DS(ph)EEEQER ddPTM_HeLa_A486_30min_R1 1 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 3 0 GLVAAYS(1)GES(1)DS(1)EEEQER 145.48 3.97E-08 329990000 401230 472960 463290 201150 554780 463840 485180 547540 446840 522380 TRUE FALSE FALSE 373105.849 435480.9271 642688.2953 468287.3656 485194.3193 406616.1368 363782.8323 422877.0947 485572.451 391572.6479 0.952839405 1.112133162 1.641300277 1.195914393 1.239091448 1.03841813 0.929030243 1.079945438 1.240057123 1 18.57892047 -6.257238349 21.87895529 1.05445802 1.242954709 0.184981966 0.177831324 111.8361516 582441.939 0.063156637 0.060830419 5.53E-07 6.257238349 0.188496689 GLVAAYSGES(ph)DS(ph)EEEQER ddPTM_HeLa_A485_30min_R1 2 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 0 GLVAAYSGES(1)DS(1)EEEQER;GLVAAYSGES(1)DS(1)EEEQER ; 360.94 1.20E-115 1564480000 1033160 1453480 1527540 1139930 1503160 1272630 1403830 1329510 1374790 1336380 TRUE FALSE FALSE 1262982.878 1623451.842 2092640.612 1202201.489 1353500.112 1339262.939 1103890.252 1003445.588 1650697.743 1003245.06 1.258897679 1.618200684 2.085871832 1.198312892 1.34912213 1.334931007 1.100319649 1.000199879 1.645358455 1 19.93624262 -5.328297177 24.99906952 1.236220645 1.650716027 0.359475537 0.257921727 196.5226967 73481.98633 0.072335869 0.107291426 4.70E-06 5.328297177 0.414495381 GLVAAYSGES(ph)DS(ph)EEEQER ddPTM_HeLa_A486_30min_R1 5 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 0 GLVAAYSGES(1)DS(1)EEEQER;GLVAAYSGES(1)DS(1)EEEQER;GLVAAYSGES(1)DS(1)EEEQER;GLVAAYS(0.018)GES(0.982)DS(1)EEEQER;GLVAAYS(0.006)GES(0.994)DS(1)EEEQER ;;;; 262.66 1.24E-57 2336300000 1898357 2320230 2099054 740861 2308070 1822045 2066402 2084840 1875374 2128120 TRUE FALSE FALSE 1765291.977 2136366.525 2911863.923 1724761.849 2018570.339 1597259.613 1549366.363 1610167.444 2037932.928 1595224.9 1.106610094 1.339225914 1.825362633 1.081202938 1.265382918 1.001275502 0.97125262 1.009367045 1.277520761 1 20.6053284 -5.40968701 19.53692239 1.085889398 1.421672953 0.391136729 0.19275558 4.695036134 799.1589105 0.055252834 0.081953132 3.89E-06 5.40968701 0.335783555 GLVAAYSGES(ph)DS(ph)EEEQERGGPER ddPTM_HeLa_A485_30min_R1 1 GLVAAYSGESDSEEEQERGGPER 23 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 0 GLVAAY(0.005)S(0.124)GES(0.875)DS(0.996)EEEQERGGPER 78.236 0.0058155 443670000 34875 60127 67340 34167 98379 85201 85586 151010 58754 57315 TRUE FALSE FALSE 42632.82343 67158.32961 92251.86825 36033.45669 88584.04133 89661.99261 67299.85193 113974.5607 70545.38888 43027.4253 0.990829061 1.560826128 2.144024831 0.837453239 2.058780899 2.083833555 1.564115246 2.648881729 1.639544741 1 15.39296889 -5.850088734 19.81257882 1.914133723 1.449067935 0.136417916 0.519882944 8.069517363 1796.149739 0.154819175 0.175549143 1.41E-06 5.850088734 -0.465065788 GLVAAYSGES(ph)DSEEEQER ddPTM_HeLa_A485_30min_R1 1 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 GLVAAYSGES(0.978)DS(0.022)EEEQER 295.98 9.08E-87 0 41938 56779 57178 49580 58693 57656 54253 60166 49482 54791 TRUE FALSE FALSE 51266.96342 63418.81014 78330.52158 52288.42986 52849.31884 60674.77901 42661.40334 45410.19416 59412.58352 41132.61205 1.246382392 1.541813344 1.904341049 1.271215886 1.284851999 1.475101531 1.037167377 1.103994906 1.444415527 1 15.32799507 -6.011894065 1.129950646 1.177655815 1.539368549 0.306217452 0.215130537 0.60966402 1.645473567 0.104000578 0.119059131 9.73E-07 6.011894065 0.361712734 GLVGEIIK ddPTM_HeLa_A486_30min_R1 1 GLVGEIIK 8 0 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;F6XY72;E5RHP0;C9K028 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 136.11 0.020888 43992000 121540 128920 107350 62957 238010 120470 148890 137670 107270 132280 FALSE FALSE TRUE 113020.6736 118703.9097 148918.7949 146567.0777 208156.5664 105607.6362 111636.1472 106325.5463 116568.25 99156.227 1.139824266 1.197140243 1.501860241 1.478142948 2.099278812 1.065063077 1.125861185 1.072303269 1.175601911 1 16.59741576 GLVGEIIKR ddPTM_HeLa_A485_30min_R1 4 GLVGEIIKR 9 1 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;F6XY72;E5RHP0;C9K028 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ;;; ;;; 134.77 0.00045469 864760000 516689 696362 596334 474777 732655 778278 841525 1032479 578013 682304 FALSE FALSE TRUE 631624.6855 777795.4784 816942.7621 500712.8653 659709.2957 819027.4326 661726.3091 779261.9064 694014.9073 512218.1697 1.233116517 1.518484748 1.59491172 0.977538274 1.287945908 1.598981608 1.29188371 1.521347645 1.354920517 1 18.9663989 -8.051665593 21.68016187 0.999999997 1.381832623 0.276348112 0.182529601 4092.658273 1717379.978 0.178605564 0.046115758 8.88E-09 8.051665593 0.381832626 GLVGEIIKR ddPTM_HeLa_A486_30min_R1 2 GLVGEIIKR 9 1 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;F6XY72;E5RHP0;C9K028 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ; ; 128.28 0.00064239 734380000 694250 739570 537700 282760 1123320 787180 955630 978420 685330 1008600 FALSE FALSE TRUE 645586.6601 680963.7797 745911.8401 658279.5699 982422.7311 690065.7351 716521.2664 755655.1248 744734.9562 756039.9951 0.853905434 0.90069809 0.986603678 0.870694109 1.299432222 0.912737077 0.947729315 0.999490939 0.985047036 1 19.52810303 -4.718827229 1.413348024 1.008385842 0.844684663 0.183587233 0.107821635 1.045115976 3.308444491 0.032875153 0.193858774 1.91E-05 4.718827229 -0.163701179 GLVLDHGAR ddPTM_HeLa_A485_30min_R1 1 GLVLDHGAR 9 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 0 109.71 0.0033201 54856000 60980 95876 104870 64639 104970 100440 106580 123520 75072 95778 FALSE FALSE TRUE 74544.79062 107087.8642 143665.777 68170.0649 94518.81823 105698.8831 83808.31232 93226.52633 90138.2618 71902.30726 1.036751023 1.489352265 1.998069081 0.948092871 1.314544996 1.47003465 1.165585855 1.296572111 1.253621271 1 16.13375045 -8.318750842 0.323102374 0.949082803 1.430787558 0.134737932 0.27208339 5.141684232 1.269021308 0.805178021 0.335731558 4.80E-09 8.318750842 0.481704755 GLVLDHGAR ddPTM_HeLa_A486_30min_R1 1 GLVLDHGAR 9 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 0 105.52 0.0040184 82869000 36269 46738 54960 18665 66984 44432 50326 49444 46102 54533 FALSE FALSE TRUE 33726.73039 43034.31066 76241.98388 43453.06328 58582.24212 38950.43159 37733.90251 38186.68055 50098.15848 40877.58185 0.825066671 1.052760675 1.865129502 1.06300474 1.433114178 0.952855571 0.923095271 0.93417171 1.225565609 1 15.31902223 -6.280479531 24.04595725 0.997770688 1.2610068 0.164148711 0.270320996 921.9379979 1164318.288 0.097335273 0.085997519 5.24E-07 6.280479531 0.263236112 GLVLGPIHK ddPTM_HeLa_A485_30min_R1 2 GLVLGPIHK 9 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;H0YFS2;F5H0E2 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ; ; 101.99 0.0032471 29715000 19940.2 18752.4 11930.9 18211.3 13450.8 25250 24609 22341 21083.4 39349 FALSE FALSE TRUE 24375.8287 20945.33006 16344.6364 19206.13721 12111.59112 26572.05096 19351.08611 16861.83472 25314.64499 29540.01846 0.825179873 0.709049322 0.553304881 0.6501735 0.410006214 0.899527229 0.655080366 0.570813276 0.856961042 1 14.85038311 -7.96273981 4.535977595 0.998815117 0.657410509 0.425497291 0.130252833 0.158948299 7.492229464 0.124903345 0.032684157 1.09E-08 7.96273981 -0.341404608 GLVRPGS(ph)SR ddPTM_HeLa_A485_30min_R1 4 GLVRPGSSR 9 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GLVRPGS(0.681)S(0.319)R;GLVRPGS(0.777)S(0.223)R;GLVRPGS(0.614)S(0.386)R;GLVRPGS(0.5)S(0.5)R ;;; 61.344 0.014079 916240000 141551 238680 259072 183348 249776 214985 242344 258522 211362 221393 TRUE FALSE FALSE 173038.5316 266591.5498 354913.5137 193363.837 224907.4244 226241.2822 190565.2246 195119.0742 253780.4147 166203.7995 1.041122598 1.604003943 2.135411553 1.163414059 1.353202665 1.361228099 1.146575621 1.173974811 1.526923063 1 17.34259384 GLVRPGS(ph)SR ddPTM_HeLa_A486_30min_R1 4 GLVRPGSSR 9 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GLVRPGS(0.62)S(0.38)R;GLVRPGS(0.5)S(0.5)R;GLVRPGS(0.624)S(0.376)R;GLVRPGS(0.5)S(0.5)R ;;; 64.224 0.011235 853440000 179392 218316 201843 68248 229544 183065 211986 204973 178005 202904 TRUE FALSE FALSE 166817.5472 201015.8451 280002.0151 158884.7931 200752.4511 160480.3016 158944.8606 158305.1224 193434.6167 152095.5177 1.096794631 1.321642137 1.840961649 1.044638234 1.31991037 1.055128409 1.045033167 1.040827007 1.271796958 1 17.21461811 GLWSTDS(ph)AEEDKETK ddPTM_HeLa_A485_30min_R1 1 GLWSTDSAEEDKETK 15 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GLWS(0.001)T(0.017)DS(0.982)AEEDKETK 199.76 1.40E-25 328220000 308470 173860 126520 619820 241170 270680 516210 431820 202010 858760 TRUE FALSE FALSE 377088.0873 194191.4146 173325.0129 653679.1971 217158.268 284852.3862 405917.5165 325915.4679 242551.5541 644686.9363 0.584916594 0.301218163 0.268851443 1.01394826 0.336842979 0.441846065 0.629635089 0.505540673 0.376231533 1 19.29823922 -10.23812472 5.27120349 1.000036825 0.496322796 0.349579689 0.206464184 0.000116585 1.69E-05 0.197867753 0.047985372 5.78E-11 10.23812472 -0.503714029 GLWSTDS(ph)AEEDKETK ddPTM_HeLa_A486_30min_R1 2 GLWSTDSAEEDKETK 15 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GLWS(0.066)T(0.26)DS(0.673)AEEDKETK;GLWS(0.06)T(0.319)DS(0.622)AEEDKETK ; 145.48 3.90E-08 1288760000 895470 800130 354430 690960 740520 1046170 1526860 1259160 590850 1909370 TRUE FALSE FALSE 832702.1772 736724.7848 491674.788 1608589.799 647637.0765 917104.1821 1144823.479 972476.7553 642065.3537 1431251.324 0.58180011 0.514741732 0.343527918 1.123904497 0.452497102 0.640770888 0.799875926 0.679459113 0.448604199 1 20.4488456 -11.37259931 2.217764732 3.502464387 0.626774168 0.228218599 0.209043975 14819530.98 1808483.148 185547731.8 0.05620151 4.24E-12 11.37259931 -2.875690219 GLWSTDS(ph)AEEDKETKR ddPTM_HeLa_A485_30min_R1 2 GLWSTDSAEEDKETKR 16 2 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GLWSTDS(1)AEEDKETKR;GLWSTDS(1)AEEDKETKR ; 171.68 1.36E-12 708530000 241330 208780 137757 423840 263330 298790 446730 510150 182458 624900 TRUE FALSE FALSE 295013.0259 233195.0049 188719.0468 446993.306 237111.9406 314434.1824 351282.4861 385034.9126 219075.647 469123.9304 0.628859469 0.497086142 0.402279727 0.952825633 0.505435611 0.670258245 0.748805301 0.820753084 0.466988855 1 18.83960957 -14 0.122335503 2.127193524 0.474920475 0.307662364 0.164190399 186.4830567 1.46763659 52.48234228 1.478833616 1.00E-14 14 -1.652273049 GLYDGPVCEVSVT(ph)PK ddPTM_HeLa_A485_30min_R1 6 GLYDGPVCEVSVTPK 15 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 GLYDGPVCEVSVT(1)PK;GLYDGPVCEVS(0.001)VT(0.999)PK;GLYDGPVCEVS(0.001)VT(0.999)PK;GLYDGPVCEVSVT(1)PK;GLYDGPVCEVS(0.001)VT(0.999)PK;GLYDGPVCEVS(0.001)VT(0.999)PK ;;;;; 330.28 1.27E-89 7938300000 2375700 2047980 1910712 3842860 3001830 2364886 3751960 3275650 2031537 4647000 TRUE FALSE FALSE 2904166.269 2287473.446 2617563.88 4052785.711 2702957.265 2488707.774 2950323.095 2472291.701 2439247.842 3488588.422 0.832476038 0.655701725 0.750321782 1.161726527 0.774799701 0.713385322 0.845706841 0.708679673 0.699207687 1 21.73421197 -9.156700167 15.06108209 0.999980185 0.795186396 0.172750916 0.135486408 0 0 0.13680051 0.033178997 6.97E-10 9.156700167 -0.204793789 GLYDGPVCEVSVT(ph)PK ddPTM_HeLa_A486_30min_R1 6 GLYDGPVCEVSVTPK 15 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 GLYDGPVCEVS(0.001)VT(0.999)PK;GLYDGPVCEVSVT(1)PK;GLYDGPVCEVSVT(1)PK;GLYDGPVCEVSVT(1)PK;GLYDGPVCEVS(0.004)VT(0.996)PK;GLYDGPVCEVSVT(1)PK ;;;;; 350.45 2.16E-103 7077100000 2986836 3436896 1890164 2077607 3328490 3803520 5214590 4851510 2790234 5443600 TRUE FALSE FALSE 2777474.22 3164543.844 2622086.121 4836774.092 2910999.747 3334280.374 3909844.428 3746927.081 3032093.73 4080487.128 0.680672217 0.775530897 0.642591445 1.185342323 0.713395155 0.817128022 0.958180802 0.918254846 0.743071509 1 21.96030996 GMDDDRGPR ddPTM_HeLa_A485_30min_R1 1 GMDDDRGPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 62.823 0.03339 336240000 133470 158420 172570 139580 183890 154710 173320 173010 160930 188220 FALSE FALSE TRUE 163159.941 176945.8409 236410.8242 147204.902 165581.2659 162810.3764 136288.7661 130579.0262 193227.1749 141300.2179 1.1547041 1.252268705 1.673110118 1.041788216 1.171840131 1.152230186 0.964533304 0.924124733 1.367493821 1 17.10840417 GMDDDRGPR ddPTM_HeLa_A486_30min_R1 1 GMDDDRGPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 67.563 0.021285 170220000 364330 442450 372030 131060 547060 407870 430150 456010 383620 404660 FALSE FALSE TRUE 338792.3484 407388.6506 516089.9793 305114.3034 478442.6337 357551.1463 322521.9203 352186.4776 416872.4905 303330.5021 1.116908277 1.343052043 1.701411417 1.005880719 1.57729813 1.178751045 1.063269002 1.161065159 1.374317741 1 18.21053105 -6.486367837 24.72134028 1.157074263 1.352002291 0.179760013 0.207045117 904.5108217 612440.3127 0.07090178 0.062506678 3.26E-07 6.486367837 0.194928028 GMDGSTNETAS(ph)SR ddPTM_HeLa_A486_30min_R1 1 GMDGSTNETASSR 13 0 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein 1 0 GMDGSTNETAS(0.994)S(0.006)R 201.76 1.38E-16 0 206880 270300 258830 81549 321370 250720 286450 293500 208230 242690 TRUE FALSE FALSE 192378.7803 248880.4436 359055.9077 189850.1933 281060.7779 219788.7155 214777.1802 226676.4571 226279.5441 181918.8444 1.057497815 1.368085008 1.973714757 1.043598281 1.54497891 1.20816904 1.180620848 1.246030657 1.243848843 1 17.47293547 -6.374303923 7.459680465 1.189343278 1.407943621 0.160275071 0.252634363 0.550718656 32.72244514 0.089214863 0.07851821 4.22E-07 6.374303923 0.218600343 GMDS(ph)EDDLRDEVEDAVQK ddPTM_HeLa_A486_30min_R1 2 GMDSEDDLRDEVEDAVQK 18 1 Q5T2D3 Q5T2D3 OTUD3 OTU domain-containing protein 3 1 0 GMDS(1)EDDLRDEVEDAVQK;GMDS(1)EDDLRDEVEDAVQK ; 161.66 2.69E-12 138885000 441860 363290 319920 129961 406870 363850 374820 365160 276060 341130 TRUE FALSE FALSE 410887.8958 334501.5773 443801.5918 302555.7759 355836.5707 318961.8864 281036.0716 282021.0394 299989.1031 255708.8276 1.606858471 1.308134648 1.735573996 1.183204267 1.391569364 1.24736361 1.099047202 1.102899114 1.173166785 1 17.96414244 -6.010594937 0.542701067 1.045151993 1.573741816 0.627213136 0.135395132 0.669723979 0.419479821 0.106807318 0.168714135 9.76E-07 6.010594937 0.528589823 GMGPGT(ph)PAGYGR ddPTM_HeLa_A485_30min_R1 7 GMGPGTPAGYGR 12 0 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR ;;;;;; 161.87 1.43E-09 7151470000 3515580 4112924 4443602 3680865 5623600 4242411 4764350 5028940 3795667 4690820 TRUE FALSE FALSE 4297608.642 4593894.684 6087475.294 3881941.335 5063694.638 4464537.08 3746407.701 3795584.58 4557422.551 3521484.902 1.220396725 1.304533403 1.728667157 1.102359216 1.437943021 1.26779958 1.063871578 1.077836392 1.294176371 1 21.74775247 -6.578182477 4.480348868 1.117117974 1.361878031 0.329853911 0.167597203 0.256459161 10.75954375 0.064899967 0.050211289 2.64E-07 6.578182477 0.244760058 GMGPGT(ph)PAGYGR ddPTM_HeLa_A486_30min_R1 5 GMGPGTPAGYGR 12 0 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR ;;;; 115.92 0.0012378 3257840000 2542320 2946930 2555330 1016230 3597350 2759950 3110040 3199720 2293510 3049430 TRUE FALSE FALSE 2364116.497 2713404.534 3544822.21 2365834.797 3146136.819 2419455.43 2331875.097 2471213.605 2492313.293 2285832.88 1.034247306 1.187052894 1.550779255 1.034999023 1.376363446 1.058456833 1.020142425 1.08109986 1.090330494 1 21.1242885 -6.347891761 10.15392723 1.052810106 1.240104778 0.294576955 0.144371386 0.696142913 78.51580726 0.050258222 0.044303364 4.49E-07 6.347891761 0.187294672 GMGS(ph)LDAMDK ddPTM_HeLa_A485_30min_R1 3 GMGSLDAMDK 10 0 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 GMGS(1)LDAMDK;GMGS(1)LDAMDK;GMGS(1)LDAMDK ;; 125.46 0.00011306 412210000 820550 834650 714510 1122800 1029810 904130 1212260 1074340 831060 1492670 TRUE FALSE FALSE 1003078.517 932255.057 978836.9822 1184135.721 927278.5005 951468.8487 953250.7477 810856.4305 997846.1191 1120574.84 0.895146385 0.831943592 0.873513261 1.056721675 0.827502517 0.849089963 0.850680128 0.723607565 0.890476998 1 20.09580757 GMGS(ph)LDAMDK ddPTM_HeLa_A486_30min_R1 4 GMGSLDAMDK 10 0 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 GMGS(1)LDAMDK;GMGS(1)LDAMDK;GMGS(1)LDAMDK;GMGS(1)LDAMDK ;;; 152.96 2.89E-06 662180000 1324780 1431890 951200 531726 1443910 1567520 1763930 1691060 1236320 1889950 TRUE FALSE FALSE 1231919.763 1318421.822 1319530.114 1237885 1262801.344 1374135.32 1322576.057 1306042.554 1343485.213 1416694.218 0.869573509 0.930632598 0.931414907 0.873784183 0.891371848 0.969959009 0.933564943 0.921894461 0.94832406 1 20.43409697 -6.252898592 24.96884899 0.948542927 0.901453489 0.492820617 0.027701405 639.394222 1869257.935 0.009304874 0.009162608 5.59E-07 6.252898592 -0.047089438 GMQEAS(ph)MKLT(ph)ESLHEVYEPDWYGREDVK ddPTM_HeLa_A486_30min_R1 1 GMQEASMKLTESLHEVYEPDWYGREDVK 28 2 P49418-2;P49418 P49418-2 AMPH Amphiphysin 2 0 GMQEAS(0.596)MKLT(0.64)ES(0.583)LHEVY(0.156)EPDWY(0.025)GREDVK 88.191 0.0033439 1209000000 36467 84616 16368 776870 51372 192580 228420 233740 46918 462830 TRUE FALSE FALSE 33910.85162 77910.71999 22706.12795 1808592.621 44928.44474 168821.4376 171266.9 180522.5045 50984.89002 346934.3555 0.097744288 0.224569054 0.065447908 5.213068675 0.129501285 0.486609167 0.493657942 0.520336201 0.14695832 1 18.40430319 GMQEAS(ph)MKLTESLHEVY(ph)EPDWYGREDVK ddPTM_HeLa_A485_30min_R1 2 GMQEASMKLTESLHEVYEPDWYGREDVK 28 2 P49418-2;P49418 P49418-2 AMPH Amphiphysin 2 0 GMQEAS(0.486)MKLT(0.473)ES(0.45)LHEVY(0.502)EPDWY(0.09)GREDVK;GMQEAS(0.439)MKLT(0.489)ES(0.467)LHEVY(0.519)EPDWY(0.086)GREDVK ; 73.126 0.0031143 2659130000 331945 86398 58074.5 2631490 180334 239318 415287 196767 141154 1667970 TRUE FALSE FALSE 405785.0201 96501.49454 79558.67423 2775241.635 162379.3138 251848.3204 326557.5399 148509.5847 169482.3131 1252175.776 0.324063944 0.077067051 0.063536347 2.216335509 0.129677731 0.201128568 0.260792092 0.118601228 0.135350257 1 20.25600567 -10.15330908 5.290334769 1.000019855 0.401376374 0.080287268 0.616748024 0.000148813 2.38E-05 0.61526882 0.149219667 7.03E-11 10.15330908 -0.598643482 GMQEAS(ph)MKLTESLHEVY(ph)EPDWYGREDVK ddPTM_HeLa_A486_30min_R1 2 GMQEASMKLTESLHEVYEPDWYGREDVK 28 2 P49418-2;P49418 P49418-2 AMPH Amphiphysin 2 0 GMQEAS(0.442)MKLT(0.488)ES(0.467)LHEVY(0.512)EPDWY(0.091)GREDVK;GMQEAS(0.446)MKLT(0.484)ES(0.466)LHEVY(0.49)EPDWY(0.115)GREDVK ; 65.301 0.0054382 3010861000 31179.2 61098.4 13850.4 482761 40021.9 112139 137958 131416 41170.7 308849 TRUE FALSE FALSE 28993.69909 56256.74027 19213.64581 1123892.005 35001.98011 98304.43033 103439.4492 101495.4456 44739.40943 231511.2001 0.125236702 0.242997921 0.082992295 4.854590209 0.151189144 0.424620624 0.446801058 0.438404041 0.193249438 1 17.82072246 GMQEASMKLT(ph)ES(ph)LHEVYEPDWYGREDVK ddPTM_HeLa_A486_30min_R1 1 GMQEASMKLTESLHEVYEPDWYGREDVK 28 2 P49418-2;P49418 P49418-2 AMPH Amphiphysin 2 0 GMQEAS(0.328)MKLT(0.696)ES(0.667)LHEVY(0.232)EPDWY(0.077)GREDVK 74.769 0.0074016 526480000 21827 51868 0 467670 32762 111440 154850 96535 32671 306660 TRUE FALSE FALSE 20297.04001 47757.79078 0 1088759.395 28652.68447 97691.66584 116104.8922 74556.08784 35502.94859 229870.34 0.088297777 0.207759691 0 4.736406597 0.124647157 0.424985954 0.505088617 0.324339747 0.154447714 1 17.8104608 GMSIYPGYMS(ph)PHAGYPAGGLLR ddPTM_HeLa_A485_30min_R1 2 GMSIYPGYMSPHAGYPAGGLLR 22 0 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 0 GMSIYPGYMS(1)PHAGYPAGGLLR;GMSIYPGYMS(1)PHAGYPAGGLLR ; 155.87 3.83E-10 350620000 224810 300290 316770 228440 350240 306910 366410 437310 262150 285380 TRUE FALSE FALSE 274818.2089 335406.3033 433956.4049 240919.0988 315368.8758 322979.333 288123.5102 330059.0368 314761.1004 214240.018 1.282758522 1.565563271 2.025561839 1.124528932 1.472035331 1.507558373 1.344863172 1.540604038 1.469198441 1 17.70886846 -11.94853814 0.30944518 1.62E-14 1.517716737 0.296173243 0.22222631 91.02950669 2.642336967 59.88296225 0.218750962 1.13E-12 11.94853814 1.517716737 GMSIYPGYMS(ph)PHAGYPAGGLLR ddPTM_HeLa_A486_30min_R1 2 GMSIYPGYMSPHAGYPAGGLLR 22 0 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 0 GMSIYPGYMS(1)PHAGYPAGGLLR;GMSIYPGYMS(1)PHAGYPAGGLLR ; 145.63 1.35E-09 303700000 234330 224700 219890 91578 299980 250730 274480 297900 187505 270700 TRUE FALSE FALSE 217904.6771 206893.9537 305037.2969 213198.2121 262353.7112 219797.4818 205802.2008 230074.6731 203758.0844 202914.958 1.073871927 1.019609178 1.503276544 1.050677654 1.292924453 1.083199996 1.014228832 1.133847772 1.004155072 1 17.63051569 -6.482892245 12.26441223 1.049133482 1.188565208 0.216937295 0.13545471 2.630714615 805.2753753 0.0473076 0.041539129 3.29E-07 6.482892245 0.139431725 GMYDGPVFDLTT(ph)TPK ddPTM_HeLa_A486_30min_R1 1 GMYDGPVFDLTTTPK 15 0 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GMYDGPVFDLT(0.009)T(0.611)T(0.38)PK 177.81 1.24E-12 53588000 78594 80371 48054 50244 77081 98932 119780 117960 69489 145390 TRUE FALSE FALSE 73084.96646 74002.10925 66661.79573 116970.5712 67412.78223 86726.77571 89809.7771 91103.08305 75512.36247 108983.3977 0.670606423 0.679021859 0.611669274 1.073287984 0.618560108 0.795779702 0.824068427 0.835935427 0.692879504 1 16.73374885 -14 0.063600702 1.752300438 0.452510033 0.256575918 0.129013334 537.8354777 2.481110986 63.40347848 9.495019688 1.00E-14 14 -1.299790405 GMYDGPVFDLTTT(ph)PK ddPTM_HeLa_A485_30min_R1 8 GMYDGPVFDLTTTPK 15 0 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GMYDGPVFDLTT(0.036)T(0.964)PK;GMYDGPVFDLTT(0.004)T(0.996)PK;GMYDGPVFDLTT(0.014)T(0.986)PK;GMYDGPVFDLT(0.004)T(0.031)T(0.966)PK;GMYDGPVFDLTT(0.001)T(0.999)PK;GMYDGPVFDLT(0.001)T(0.062)T(0.937)PK;GMYDGPVFDLTT(0.017)T(0.983)PK;GMYDGPVFDLT(0.002)T(0.179)T(0.819)PK ;;;;;;; 240.46 1.70E-40 8042546000 5566610 5281170 4288450 7874740 6592770 5579940 8868870 8334860 4746320 10425540 TRUE FALSE FALSE 6804883.19 5898756.891 5874926.112 8304917.106 5936370.67 5872097.03 6973963.472 6290722.516 5698862.888 7826644.746 0.869450884 0.75367633 0.750631503 1.061108224 0.758482193 0.750270035 0.891054047 0.803757258 0.728136139 1 22.89996253 -10.15291571 4.868221926 1.000013561 0.819667042 0.243270214 0.096010217 1.41E-05 2.45E-06 0.092695586 0.022480292 7.03E-11 10.15291571 -0.180346519 GMYDGPVFDLTTT(ph)PK ddPTM_HeLa_A486_30min_R1 9 GMYDGPVFDLTTTPK 15 0 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GMYDGPVFDLTT(0.011)T(0.989)PK;GMYDGPVFDLTT(0.015)T(0.985)PK;GMYDGPVFDLT(0.007)T(0.066)T(0.927)PK;GMYDGPVFDLTT(0.013)T(0.987)PK;GMYDGPVFDLTTT(1)PK;GMYDGPVFDLTT(0.011)T(0.989)PK;GMYDGPVFDLTT(0.006)T(0.994)PK;GMYDGPVFDLT(0.004)T(0.011)T(0.985)PK;GMYDGPVFDLT(0.047)T(0.22)T(0.734)PK ;;;;;;;; 283.45 6.68E-58 10045828000 6366500 6742770 4033188 4114699 6483730 7628460 9954140 9575610 5591223 11916150 TRUE FALSE FALSE 5920241.227 6208448.348 5594946.406 9579227.217 5670480.125 6687338.166 7463508.888 7395452.637 6075874.711 8932268.479 0.662792575 0.695058412 0.626374635 1.072429388 0.63483091 0.748671872 0.835567013 0.827947867 0.680216311 1 23.09059518 -14 0.14423588 1.790038515 0.681921508 0.254771452 0.126827113 203.1880581 1.770316194 46.7037154 0.719022691 1.00E-14 14 -1.108117007 GNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_A485_30min_R1 6 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK ;;;;; 189.86 3.32E-19 9984890000 13238910 6157060 4995970 31029170 9156640 7281350 13686940 6838910 7288000 38821410 TRUE FALSE FALSE 16183859.86 6877074.608 6844187.203 32724214.99 8244972.771 7662590.227 10762613.46 5161656.6 8750634.751 29143946.94 0.555307759 0.235969226 0.234840779 1.122847741 0.282905153 0.262922186 0.369291554 0.177109045 0.300255651 1 24.79669294 -10.1917769 5.093778614 1.000046491 0.39147744 0.323089235 0.263351964 0.000142393 2.26E-05 0.261135804 0.063329916 6.43E-11 10.1917769 -0.608569051 GNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_A486_30min_R1 7 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK;GNAEGS(1)S(1)DEEGKLVIDEPAK ;;;;;; 172.74 1.07E-13 15669520000 10032960 10511760 3481320 7715530 6380950 15750070 16777980 13736210 8711540 22451850 TRUE FALSE FALSE 9329701.314 9678769.854 4829380.337 17962143.76 5580591.751 13806986.5 12579951.94 10608774.84 9466663.301 16829760.62 0.554357339 0.575098486 0.286954785 1.067284566 0.331590679 0.82039114 0.747482524 0.630358035 0.562495422 1 24.00451132 -14 0.141511675 2.239964531 0.496847266 0.227849902 0.213543875 209.7220568 1.807748061 74.06653875 1.228767645 1.00E-14 14 -1.743117265 GNAEGS(ph)S(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_A485_30min_R1 8 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK ;;;;;;; 153.01 5.77E-10 10508110000 2537820 1175544 914246 6826310 2582850 2277666 4771460 3311340 1638700 9728890 TRUE FALSE FALSE 3102349.304 1313013.645 1252463.64 7199214.03 2325692.385 2396921.07 3751998.592 2499228.673 1967572.059 7303656.77 0.424766579 0.179774829 0.17148446 0.985699939 0.318428488 0.328180957 0.513715076 0.342188681 0.269395471 1 22.80018754 -10.83125716 2.535757697 1.225682292 0.39530517 0.404300903 0.221154746 74101239.75 47162077.76 101804644.6 0.057520959 1.47E-11 10.83125716 -0.830377122 GNAEGS(ph)S(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_A486_30min_R1 6 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK ;;;;; 158.83 9.16E-11 11333290000 1942720 1758340 605450 2226930 1438400 2940990 4327600 3698380 1392550 5163800 TRUE FALSE FALSE 1806545.36 1619002.735 839896.4545 5184405.583 1257982.459 2578160.556 3244788.707 2856339.609 1513257.355 3870750.869 0.466717033 0.418265807 0.216985407 1.339379815 0.32499701 0.666062127 0.838284048 0.737929075 0.39094672 1 21.88418202 GNAEGS(ph)SDEEGKLVIDEPAK ddPTM_HeLa_A486_30min_R1 2 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.874)S(0.126)DEEGKLVIDEPAK;GNAEGS(0.887)S(0.113)DEEGKLVIDEPAK ; 169.91 7.07E-14 4618200000 2194160 2679600 996620 1379620 1781510 3530800 3881300 3122100 2080960 4532600 TRUE FALSE FALSE 2040360.715 2467258.737 1382537.954 3211825.082 1558056.404 3095205.795 2910157.688 2411265.985 2261339.288 3397607.458 0.600528678 0.726175336 0.406915152 0.945319647 0.458574577 0.910995703 0.856531463 0.709695283 0.665568144 1 21.69608775 -6.279046904 24.90839879 0.812162401 0.63838611 0.269799927 0.163788993 1240.868298 1755382.827 0.055358795 0.048929765 5.26E-07 6.279046904 -0.173776291 GNAEGS(ph)SDEEGKLVIDEPAKEK ddPTM_HeLa_A485_30min_R1 2 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK;GNAEGS(0.86)S(0.14)DEEGKLVIDEPAKEK ; 214.78 1.73E-28 1426140000 833840 391030 271402 1956770 815990 648750 1518840 980610 520980 2646190 TRUE FALSE FALSE 1019324.831 436757.557 371804.8938 2063663.39 734747.1705 682717.5468 1194327.426 740113.86 625535.9073 1986543.533 0.513114772 0.219858035 0.187161715 1.038821127 0.369862104 0.343671073 0.601208786 0.372563625 0.314886584 1 20.92182898 -10.8976968 2.674702884 1.297338557 0.441664409 0.344507603 0.2316746 56090526.43 34096849.39 105099819.8 0.059023253 1.27E-11 10.8976968 -0.855674148 GNAEGS(ph)SDEEGKLVIDEPAKEK ddPTM_HeLa_A486_30min_R1 3 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK;GNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK;GNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK ;; 230.84 7.20E-37 3772560000 4459070 3916220 1245540 4502500 3426500 6488700 9216400 8079800 3153520 10194100 TRUE FALSE FALSE 4146512.22 3605884.465 1727846.445 10482047.54 2996716.419 5688190.166 6910359.239 6240205.921 3426869.653 7641431.008 0.542635563 0.47188602 0.226115559 1.371738819 0.392166914 0.744388081 0.904327898 0.816627921 0.44845915 1 22.86541141 GNAEGSS(ph)DEEGKLVIDEPAK ddPTM_HeLa_A485_30min_R1 2 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.122)S(0.878)DEEGKLVIDEPAK;GNAEGS(0.164)S(0.836)DEEGKLVIDEPAK ; 213.7 1.72E-27 1398890000 804070 577870 548430 1736660 770770 639980 982280 683230 652670 2201500 TRUE FALSE FALSE 982932.5975 645446.8697 751317.0791 1831529.338 694029.4325 673488.3632 772407.8535 515666.7712 783654.8824 1652706.566 0.594741146 0.390539303 0.454597988 1.108199953 0.419935061 0.407506316 0.467359342 0.312013507 0.474164561 1 20.65639917 -10.66156915 4.661965798 1.012871701 0.513156559 0.323877519 0.210505414 0.029565328 0.002146264 0.213974147 0.051528948 2.18E-11 10.66156915 -0.499715142 GNAEGSS(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_A485_30min_R1 1 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.2)S(0.8)DEEGKLVIDEPAKEK 91.202 1.72E-05 0 186000 105830 59776 446430 178750 139960 338820 241190 126530 605340 TRUE FALSE FALSE 227375.0583 118205.8979 81889.62989 470817.3405 160953.0224 147288.0892 266428.3391 182037.7743 151923.4104 454439.8785 0.500341341 0.260113391 0.18019904 1.036038787 0.354178913 0.324109076 0.586278519 0.400576144 0.334309152 1 18.79372992 -10.22242367 4.153422933 1.000327154 0.443233146 0.353131965 0.226642206 151106376.6 237782945.9 601786.3388 0.058783153 5.99E-11 10.22242367 -0.557094008 GNAEGSS(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_A486_30min_R1 2 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.105)S(0.895)DEEGKLVIDEPAKEK;GNAEGS(0.014)S(0.986)DEEGKLVIDEPAKEK ; 228.55 1.25E-36 1482700000 976890 906910 332935 981210 829550 1528340 2295370 1879080 779785 2457530 TRUE FALSE FALSE 908415.0557 835043.1487 461856.3483 2284306.468 725500.1038 1339788.95 1721044.148 1451254.504 847377.3917 1842148.492 0.493128029 0.4532985 0.250716134 1.240022983 0.393833671 0.727296934 0.934259185 0.787805386 0.459994075 1 20.81295793 -5.215588475 24.9993616 0.769702057 0.404472614 0.358122448 0.239692561 497.1106417 271039.6606 0.062740171 0.108668688 6.09E-06 5.215588475 -0.365229443 GNAS(ph)PGAATHDSLSDYGPQDSRPTPMR ddPTM_HeLa_A485_30min_R1 2 GNASPGAATHDSLSDYGPQDSRPTPMR 27 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 GNAS(1)PGAATHDSLSDYGPQDSRPTPMR;GNAS(1)PGAATHDSLSDYGPQDSRPTPMR ; 251.01 6.28E-51 1314480000 172730 340620 481600 125451 468620 231120 289668 323950 281750 196480 TRUE FALSE FALSE 211153.1926 380452.546 659763.881 132304.0705 421962.5474 243221.0858 227778.0654 244500.7546 338294.6406 147501.1519 1.431535888 2.579319151 4.472940532 0.896969744 2.860740691 1.648943636 1.54424601 1.657619289 2.293505076 1 17.1703667 -5.942821802 1.261519283 1.669208155 2.624967726 0.142562851 0.937536435 0.884301148 2.946968103 0.402722266 0.483578811 1.14E-06 5.942821802 0.955759572 GNDPLTS(ph)S(ph)PGR ddPTM_HeLa_A486_30min_R1 1 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 GNDPLT(0.023)S(0.977)S(1)PGR 135.04 5.25E-05 932530000 1818600 2403200 2197300 673090 2644400 2002600 2261900 2280900 1823900 2077500 TRUE FALSE FALSE 1691125.531 2212761.68 3048153.406 1566987.536 2312714.694 1755539.573 1695948.696 1761588.862 1981997.121 1557280.478 1.085947943 1.42091403 1.957356719 1.00623334 1.485098367 1.127311103 1.089045114 1.131195624 1.272729703 1 20.57059738 -6.083294423 1.390555905 1.125545971 1.434209407 0.201625694 0.250931711 0.676877674 2.671869499 0.109160847 0.114299362 8.25E-07 6.083294423 0.308663436 GNDPLTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 6 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GNDPLTSS(1)PGR;GNDPLTSS(1)PGR;GNDPLTS(0.02)S(0.98)PGR;GNDPLTSS(1)PGR;GNDPLT(0.012)S(0.203)S(0.785)PGR;GNDPLTS(0.003)S(0.997)PGR ;;;;; 213.73 1.36E-15 79113030000 9579430 13359130 14956690 10836520 15605280 12681190 14167570 14318530 12891300 13992060 TRUE FALSE FALSE 11710341.15 14921364.04 20489792.03 11428491.65 14051563.53 13345157.5 11140552.93 10806888.07 15478465.66 10504096.95 1.114835594 1.420528021 1.950647651 1.088003253 1.337722186 1.270471661 1.060591214 1.028826002 1.473564624 1 23.3244488 GNDPLTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 7 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GNDPLTSS(1)PGR;GNDPLTSS(1)PGR;GNDPLTS(0.017)S(0.983)PGR;GNDPLTSS(1)PGR;GNDPLTSS(1)PGR;GNDPLTS(0.018)S(0.982)PGR;GNDPLTS(0.01)S(0.99)PGR ;;;;;; 202.92 9.95E-15 94448000000 14423720 17328340 16201390 4763227 19734000 15083610 16340480 17224290 14634610 15857640 TRUE FALSE FALSE 13412691.71 15955179.23 22475002.1 11089033.18 17258777.71 13222747.56 12251919.07 13302695.17 15903149.78 11886783.73 1.128370131 1.342262095 1.890755532 0.932887603 1.451929984 1.11239069 1.030717758 1.119116447 1.337885011 1 23.50285507 -5.298410586 24.9996753 1.152872427 1.442643417 0.281132254 0.228643232 770.1964177 520799.9028 0.064095639 0.095071683 5.03E-06 5.298410586 0.28977099 GNDS(ph)DGEGESDDPEK ddPTM_HeLa_A485_30min_R1 2 GNDSDGEGESDDPEK 15 0 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 GNDS(1)DGEGESDDPEK;GNDS(1)DGEGESDDPEK ; 347.33 7.94E-121 231990000 547300 360450 298440 949420 407350 313880 494990 290160 383070 1067630 TRUE FALSE FALSE 669044.9968 402601.492 408845.3751 1001284.411 366792.8037 330314.2714 389231.3428 218997.805 459948.6353 801489.4893 0.834752053 0.502316621 0.51010697 1.249279528 0.457638944 0.412125519 0.485634993 0.273238524 0.573867333 1 19.61232408 -5.893028735 20.68880235 0.488805991 0.750556737 0.151215057 0.264052978 5.243825956 991.8246616 0.080265536 0.091012771 1.28E-06 5.893028735 0.261750746 GNDS(ph)DGEGESDDPEK ddPTM_HeLa_A486_30min_R1 3 GNDSDGEGESDDPEK 15 0 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 GNDS(1)DGEGESDDPEK;GNDS(1)DGEGESDDPEK;GNDS(1)DGEGESDDPEK ;; 387.62 2.80E-134 914780000 1147920 1361840 595770 522000 888570 1538440 1587770 1255020 1168650 1910750 TRUE FALSE FALSE 1067456.736 1253922.839 826468.0993 1215242.38 777117.265 1348642.915 1190493.152 969279.3429 1269949.523 1432285.763 0.745281957 0.875469736 0.577027379 0.848463632 0.542571381 0.941601843 0.8311841 0.676736003 0.886659322 1 20.44988793 -6.293659907 24.95700137 0.844778972 0.725966709 0.25214172 0.125376236 1146.779407 888255.2841 0.042781271 0.037732641 5.09E-07 6.293659907 -0.118812263 GNDS(ph)DGEGESDDPEKKK ddPTM_HeLa_A486_30min_R1 1 GNDSDGEGESDDPEKKK 17 2 K7EKZ3;O75351 K7EKZ3 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 GNDS(1)DGEGESDDPEKKK 149.32 2.39E-08 322790000 525430 428040 163210 584970 365760 733490 1099900 893890 325240 1535600 TRUE FALSE FALSE 488600.0703 394120.5515 226409.2829 1361839.723 319882.9702 642999.4614 824693.3864 690370.7605 353432.0651 1151075.765 0.424472554 0.342393232 0.196693641 1.183101725 0.277899144 0.558607418 0.716454478 0.599761355 0.307045006 1 20.13455137 -14 0.225260063 3.407147971 0.46648554 0.214734416 0.273014188 257.5607473 2.579187591 283.6771005 0.497530174 1.00E-14 14 -2.940662431 GNEDLSNNGSLHSANSTTNLAAIEPQPS(ph)PPHSEPPSVEQPPKPK ddPTM_HeLa_A486_30min_R1 1 GNEDLSNNGSLHSANSTTNLAAIEPQPSPPHSEPPSVEQPPKPK 44 1 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 GNEDLSNNGSLHSANSTTNLAAIEPQPS(0.992)PPHS(0.007)EPPS(0.002)VEQPPKPK 189.46 6.52E-23 470400000 115630 114650 69223 14024 114790 102980 130120 132160 93838 70720 TRUE FALSE FALSE 107524.9341 105564.7165 96027.99946 32648.58073 100391.9678 90275.37462 97562.59973 102070.053 101971.9534 53011.25169 2.028341733 1.991364344 1.81146448 0.615880208 1.893786029 1.702947426 1.840413056 1.925441294 1.92359075 1 15.69401099 GNEEKPAS(ph)PSAAVPPGTDHDPHGLVVK ddPTM_HeLa_A485_30min_R1 1 GNEEKPASPSAAVPPGTDHDPHGLVVK 27 1 Q52LW3 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 GNEEKPAS(0.608)PS(0.391)AAVPPGTDHDPHGLVVK 56.977 0.017119 464480000 247690 186880 185090 332610 281800 261410 372030 434310 208840 527550 TRUE FALSE FALSE 302787.786 208733.9904 253562.4932 350779.6421 253743.0025 275097.0234 292542.7513 327794.7915 250752.2724 396041.4938 0.764535511 0.527050811 0.64024224 0.88571437 0.640698024 0.694616669 0.738666922 0.827677899 0.633146466 1 18.59529207 -13.99999999 0.196362332 2.297589135 0.657229515 0.439466192 0.099193107 130.3559629 1.284842524 66.3184501 0.249770658 1.00E-14 13.99999999 -1.640359621 GNEEKPAS(ph)PSAAVPPGTDHDPHGLVVK ddPTM_HeLa_A486_30min_R1 2 GNEEKPASPSAAVPPGTDHDPHGLVVK 27 1 Q52LW3 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 GNEEKPAS(0.837)PS(0.163)AAVPPGTDHDPHGLVVK;GNEEKPAS(0.976)PS(0.024)AAVPPGTDHDPHGLVVK ; 170.44 3.46E-14 665290000 543640 506460 243216 281818 492350 620850 802730 743300 378120 799430 TRUE FALSE FALSE 505533.6434 466326.2651 337395.7488 656086.5463 430594.872 544255.8393 601878.4636 574066.8161 410895.746 599247.5246 0.84361407 0.778186385 0.563032361 1.094850657 0.718559284 0.908232103 1.004390404 0.957979454 0.68568618 1 19.19279252 -5.25724554 24.99988885 0.904093977 0.733268499 0.272872586 0.135596994 511.6756551 3050138.035 0.036471118 0.060406444 5.53E-06 5.25724554 -0.170825477 GNEPGSDRS(ph)PS(ph)PSKNDSFFTPDSNHNSLSQSTTGHLSLPQK ddPTM_HeLa_A486_30min_R1 1 GNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQK 41 2 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 2 0 GNEPGS(0.488)DRS(0.515)PS(0.963)PS(0.024)KNDS(0.005)FFT(0.005)PDSNHNSLSQSTTGHLSLPQK 70.206 0.00052273 94793000 73277 105790 100670 7244.1 134210 30496 39061 42287 89935 12310 TRUE FALSE FALSE 68140.6607 97406.81512 139652.12 16864.6309 117376.1303 26733.71358 29287.52465 32659.17322 97730.63821 9227.495875 7.384523561 10.55614832 15.13434651 1.82764979 12.72025823 2.897179684 3.173940693 3.539332194 10.5912416 1 13.17172347 -5.935641289 1.192986128 4.48795478 10.20547 0.236111932 4.197446286 0.685958487 2.058913134 1.822136527 2.22687425 1.16E-06 5.935641289 5.717515221 GNFGGSFAGSFGGAGGHAPGVAR ddPTM_HeLa_A485_30min_R1 1 GNFGGSFAGSFGGAGGHAPGVAR 23 0 A0A087X0X3;P52272-2;P52272;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 0 46.878 0.036314 31894000 2565600 890120 1272500 2317500 3161400 942330 978490 620700 671140 1016300 FALSE FALSE TRUE 3136308.869 994211.791 1743250.703 2444099.157 2846639.916 991668.9417 769427.618 468472.3518 805831.6419 762955.1136 4.110738381 1.30310653 2.284866661 3.203463891 3.731071284 1.299773635 1.008483467 0.614023477 1.05619797 1 19.54123866 -6.415208142 5.584722213 0.921497543 2.810602234 0.634671615 0.733746816 0.164418486 7.167956458 0.27076793 0.236708514 3.84E-07 6.415208142 1.889104692 GNGLIPS(ph)PAHS(ph)AHCSFYR ddPTM_HeLa_A485_30min_R1 1 GNGLIPSPAHSAHCSFYR 18 0 Q8N568-2;Q8N568;G5E9L9;Q8N568-3;A0A0U1RR70 Q8N568-2 DCLK2 Serine/threonine-protein kinase DCLK2 2 0 GNGLIPS(1)PAHS(0.923)AHCS(0.074)FY(0.002)R 53.747 0.0061713 0 89908 183810 183730 51125 232880 111590 152930 154290 149740 89241 TRUE FALSE FALSE 109907.7244 205304.9806 251699.3726 53917.82929 209693.6495 117432.6798 120255.2562 116450.1356 179791.4445 66994.86106 1.640539628 3.064488489 3.756995218 0.80480545 3.129996035 1.75286101 1.794992247 1.738195046 2.683660234 1 16.03176282 -5.253554684 24.92190627 1.922065592 2.845055726 0.230423957 0.809124734 890.5620195 2814877.743 0.212918286 0.36052967 5.58E-06 5.253554684 0.922990134 GNGLIPS(ph)PAHSAHCSFYR ddPTM_HeLa_A485_30min_R1 1 GNGLIPSPAHSAHCSFYR 18 0 Q8N568-2;Q8N568;G5E9L9;Q8N568-3;A0A0U1RR70 Q8N568-2 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 GNGLIPS(1)PAHSAHCSFYR 96.128 0.00036949 121240000 88512 306410 396180 56323 327160 190060 166610 166180 277240 84649 TRUE FALSE FALSE 108201.189 342241.9841 542743.4684 59399.78287 294586.8017 200011.2477 131012.4124 125424.0944 332879.525 63547.56215 1.702680408 5.385603672 8.54074413 0.93472953 4.635690052 3.147425974 2.061643405 1.973704265 5.238273724 1 15.95554916 -5.285116707 24.99973572 2.824702865 5.227270266 0.241455434 2.020991611 1123.668492 1186424.354 0.564796299 0.838241964 5.19E-06 5.285116707 2.402567401 GNIETTS(ph)EDGQVFS(ph)PK ddPTM_HeLa_A486_30min_R1 1 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 GNIET(0.017)T(0.095)S(0.889)EDGQVFS(1)PK 119.38 0.00015359 184440000 184170 185460 118030 126270 189690 231250 279730 257440 170250 348830 TRUE FALSE FALSE 171260.6341 170763.4742 163734.377 293962.9413 165897.3114 202720.7262 209738.5953 198826.5319 185007.4071 261480.6975 0.654964729 0.653063403 0.626181506 1.124224251 0.634453376 0.775279889 0.802118846 0.760387033 0.707537531 1 17.99634493 -14 0.206799997 2.116482918 0.717844298 0.226671162 0.138834175 235.8584363 2.346531133 109.8057396 0.313400217 1.00E-14 14 -1.39863862 GNIETTS(ph)EDGQVFSPK ddPTM_HeLa_A485_30min_R1 2 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIET(0.002)T(0.029)S(0.97)EDGQVFSPK;GNIET(0.004)T(0.321)S(0.674)EDGQVFSPK ; 160.64 8.02E-12 603220000 422503 511990 466460 530830 608280 548184 684280 726500 500118 706820 TRUE FALSE FALSE 516487.3347 571862.7768 639022.965 559827.8988 547717.5074 576886.0666 538077.9879 548324.7359 600487.0952 530622.7821 0.973360648 1.077719985 1.204288596 1.055039319 1.032216343 1.087186766 1.014049917 1.033360712 1.131664745 1 19.01732709 -5.485335486 24.98556669 1.050785764 1.091929615 0.057414237 0.062712574 1557.21818 1036349.521 0.017919831 0.026569805 3.27E-06 5.485335486 0.041143851 GNIETTS(ph)EDGQVFSPK ddPTM_HeLa_A486_30min_R1 4 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIET(0.007)T(0.035)S(0.959)EDGQVFSPK;GNIET(0.001)T(0.026)S(0.973)EDGQVFSPK;GNIET(0.061)T(0.242)S(0.697)EDGQVFSPK;GNIET(0.02)T(0.104)S(0.876)EDGQVFSPK ;;; 220.89 8.89E-34 908250000 1168030 1322440 921260 482937 1384350 1322210 1477510 1475230 1113750 1558750 TRUE FALSE FALSE 1086157.129 1217645.038 1277996.544 1124301.742 1210711.914 1159089.173 1107821.37 1139352.333 1210290.747 1168428.854 0.929587732 1.042121678 1.093773523 0.962233805 1.036187963 0.992006633 0.948129076 0.975114855 1.035827507 1 20.15613846 -6.498118072 21.95863825 0.985176087 1.015901908 0.049962279 0.046639484 432.2852999 383367.1806 0.01666353 0.014598457 3.18E-07 6.498118072 0.030725821 GNIETTSEDGQVFS(ph)PK ddPTM_HeLa_A485_30min_R1 5 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK ;;;; 286.92 3.02E-59 2476690000 1493470 1422250 1144488 2197020 1882490 1552430 2423270 2185690 1432510 2890740 TRUE FALSE FALSE 1825687.249 1588569.766 1567881.737 2317037.639 1695062.686 1633712.834 1905518.568 1649646.1 1720001.617 2170131.718 0.841279464 0.732015367 0.722482292 1.067694472 0.781087467 0.752817362 0.878065858 0.760159435 0.792579364 1 21.04935118 -10.51028826 2.83799072 1.007567511 0.814084278 0.251365725 0.096171907 24669583.29 26441014.77 1447210.968 0.024439994 3.09E-11 10.51028826 -0.193483232 GNIETTSEDGQVFS(ph)PK ddPTM_HeLa_A486_30min_R1 5 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK ;;;; 360.25 5.73E-105 2858850000 2172270 1971000 1175210 1221180 1900400 2251780 2946310 2698810 1702690 3708010 TRUE FALSE FALSE 2020005.091 1814810.782 1630282.785 2842968.755 1662034.111 1973978.278 2209112.075 2084349.878 1850280.54 2779500.161 0.726751205 0.652927029 0.586538115 1.022834535 0.597961509 0.71019182 0.794787533 0.749900974 0.665688229 1 21.40639403 -10.94204401 2.524358533 1.196541326 0.724643657 0.332647526 0.11765616 19613061.64 9538160.215 22659336.3 0.028435198 1.14E-11 10.94204401 -0.471897669 GNIWS(ph)AEK ddPTM_HeLa_A485_30min_R1 4 GNIWSAEK 8 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GNIWS(1)AEK;GNIWS(1)AEK;GNIWS(1)AEK;GNIWS(1)AEK ;;; 103.46 0.001644 1281540000 1916590 1513820 1324940 2432570 2284240 1545070 2163760 1711270 1444760 3016810 TRUE FALSE FALSE 2342928.833 1690848.081 1815090.441 2565455.14 2056813.045 1625967.476 1701455 1291578.349 1734710.08 2264774.787 1.034508529 0.746585528 0.801444122 1.132763908 0.908175531 0.717937821 0.75126896 0.570289972 0.765952575 1 21.11093616 -6.24672579 8.965809318 0.733573833 0.91966192 0.237843957 0.142095229 0.331386015 182.0295394 0.047714929 0.046354059 5.67E-07 6.24672579 0.186088087 GNIWS(ph)AEK ddPTM_HeLa_A486_30min_R1 4 GNIWSAEK 8 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GNIWS(1)AEK;GNIWS(1)AEK;GNIWS(1)AEK;GNIWS(1)AEK ;;; 124.6 0.00062177 1328790000 2346140 2432190 1519640 1305190 2267810 2750800 3266220 2892850 1753690 3212850 TRUE FALSE FALSE 2181687.701 2239454.407 2108085.305 3038548.281 1983360.123 2411434.264 2448977.209 2234211.205 1905701.261 2408331.448 0.905891796 0.92987799 0.875330224 1.261681935 0.82354118 1.001288368 1.016877146 0.927700881 0.791295261 1 21.19960253 -9.663621142 8.338067186 1 0.95402212 0.013501301 0.124148866 0 0 0.117432384 0.028481537 2.17E-10 9.663621142 -0.04597788 GNKHDDGT(ph)QSDSENAGAHR ddPTM_HeLa_A486_30min_R1 1 GNKHDDGTQSDSENAGAHR 19 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGT(0.5)QS(0.5)DSENAGAHR 76.807 0.003961 591610000 11800 16815 16651 4762.6 16846 17885 16211 14319 15567 9012.4 TRUE FALSE FALSE 10972.88094 15482.51816 23098.71313 11087.57349 14733.0176 15678.53054 12154.83634 11058.87628 16916.36009 6755.636379 1.624255706 2.291792703 3.419176497 1.641233019 2.180848224 2.320807347 1.799214116 1.636985128 2.504036503 1 12.72187596 -10.60082564 0.256612965 8.48E-17 2.33897276 0.300941808 0.52303677 29.97817923 1.382401887 20.26148811 0.810621081 2.51E-11 10.60082564 2.33897276 GNKHDDGT(ph)QSDSENAGAHRR ddPTM_HeLa_A485_30min_R1 2 GNKHDDGTQSDSENAGAHRR 20 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGT(0.567)QS(0.433)DSENAGAHRR;GNKHDDGT(0.805)QS(0.195)DSENAGAHRR ; 94.389 0.0004297 90342000 84897 76903 86899 88537 124572 82030 115238 100056 81277 115343 TRUE FALSE FALSE 103782.0448 85896.13688 119046.5563 93373.55212 112169.1743 86324.96396 90616.45989 75517.10912 97588.54838 86590.11283 1.198543822 0.991985506 1.374828515 1.078339652 1.295403951 0.996937885 1.046498924 0.872121616 1.127017222 1 16.40191468 -6.287015769 23.89485534 1.002896669 1.181247665 0.377956855 0.114746536 465.7760114 435151.256 0.038245695 0.033745931 5.16E-07 6.287015769 0.178350996 GNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A485_30min_R1 6 GNKHDDGTQSDSENAGAHR 19 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGTQS(1)DSENAGAHR;GNKHDDGT(0.002)QS(0.998)DSENAGAHR;GNKHDDGTQS(1)DSENAGAHR;GNKHDDGTQS(1)DSENAGAHR;GNKHDDGT(0.052)QS(0.927)DS(0.021)ENAGAHR;GNKHDDGT(0.004)QS(0.996)DSENAGAHR ;;;;; 324.15 1.53E-90 3403628900 1481393.6 924136 1304424.2 2498570.9 2091841.3 1161571.6 1652149.1 1009724.4 1664156.3 3254138 TRUE FALSE FALSE 1810924.496 1032205.666 1786984.993 2635061.502 1883570.235 1222389.693 1299153.948 762087.9077 1998137.205 2442941.285 0.741288588 0.422525778 0.731489129 1.078642994 0.771025586 0.500376207 0.531799088 0.311955065 0.81792273 1 21.22018776 -8.000258361 24.9995089 1.000000083 0.638532613 0.246646979 0.203529439 10.74838603 1040148.858 0.214075978 0.05527418 9.99E-09 8.000258361 -0.36146747 GNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A486_30min_R1 3 GNKHDDGTQSDSENAGAHR 19 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGTQS(1)DSENAGAHR;GNKHDDGT(0.003)QS(0.997)DSENAGAHR;GNKHDDGTQS(1)DSENAGAHR ;; 355.01 4.96E-116 3384400000 861976 1162272 808552 353047 1135792 1258706 1256598 1221696 994401 964830 TRUE FALSE FALSE 801555.9336 1070169.334 1121644.988 821911.258 993330.3765 1103419.651 942183.8895 943542.4902 1080596.479 723230.288 1.108299731 1.479707572 1.550882211 1.136444742 1.373463464 1.525682303 1.30274396 1.304622478 1.494125035 1 19.46409557 -10.19591339 3.906562212 0.999757163 1.367690036 0.355414053 0.146983409 71898266.39 82666523.37 211571.7166 0.037150741 6.37E-11 10.19591339 0.367932873 GNKHDDGTQS(ph)DSENAGAHRR ddPTM_HeLa_A485_30min_R1 3 GNKHDDGTQSDSENAGAHRR 20 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGTQS(1)DSENAGAHRR;GNKHDDGTQS(1)DSENAGAHRR;GNKHDDGT(0.034)QS(0.964)DS(0.002)ENAGAHRR ;; 172.42 3.99E-14 178203000 101135 96196 105996 98948 152905 108365 144095 122639 103575 145397 TRUE FALSE FALSE 123632.1318 107445.2854 145208.3313 104353.2787 137681.2413 114038.8238 113307.9261 92561.59296 124361.5525 109152.2037 1.132658138 0.984362035 1.330328901 0.956034557 1.261369323 1.044768863 1.03807273 0.848004802 1.139340739 1 16.73598173 -6.591749973 3.413684926 0.993651601 1.127679418 0.183422966 0.124285161 0.386204496 9.102650938 0.047393789 0.03619051 2.56E-07 6.591749973 0.134027817 GNKHDDGTQS(ph)DSENAGAHRR ddPTM_HeLa_A486_30min_R1 5 GNKHDDGTQSDSENAGAHRR 20 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGT(0.25)QS(0.75)DSENAGAHRR;GNKHDDGT(0.221)QS(0.779)DSENAGAHRR;GNKHDDGTQS(1)DSENAGAHRR;GNKHDDGT(0.173)QS(0.827)DSENAGAHRR;GNKHDDGTQS(1)DSENAGAHRR ;;;; 217.7 1.31E-35 432729000 279752 327415 275407 139913.1 453442 357413 444260 449415 286614 362690 TRUE FALSE FALSE 260142.8294 301469.443 382051.9661 325724.7676 396567.0762 313319.018 333101.4491 347093.0152 311457.9323 271870.0633 0.956864564 1.108873259 1.405274128 1.198089866 1.458664008 1.152458694 1.22522298 1.276687146 1.145613197 1 18.05255777 -10.03105202 13.5126033 0.999999997 1.223779812 0.177724154 0.136826899 0 0 0.133787604 0.03244826 9.31E-11 10.03105202 0.223779814 GNKPWISLPR ddPTM_HeLa_A485_30min_R1 1 GNKPWISLPR 10 1 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 100.69 0.0020482 166820000 132360 190170 158190 118690 176950 185440 188760 247670 147480 166580 FALSE FALSE TRUE 161803.0254 212408.7272 216711.0638 125173.7342 159332.2367 195149.3517 148429.884 186928.5442 177077.8832 125054.6717 1.293858304 1.698526927 1.732930573 1.000952083 1.274100636 1.560512287 1.186919945 1.494774579 1.416003743 1 16.93219943 -12.7849642 0.196776438 1.41E-24 1.482918881 0.237682768 0.216535287 129.8436727 1.969448366 53.41931462 0.589992851 1.64E-13 12.7849642 1.482918881 GNKS(ph)PS(ph)PPDGS(ph)PAATPEIR ddPTM_HeLa_A486_30min_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 3 0 GNKS(1)PS(1)PPDGS(1)PAATPEIR 86.946 0.0014077 445080000 278310 279500 175950 180180 309590 318810 386660 367330 254650 439450 TRUE FALSE FALSE 258801.9062 257351.4021 244082.5521 419468.1458 270758.3354 279478.4636 289913.5783 283696.9778 276723.267 329408.8597 0.785655572 0.781252218 0.740971425 1.273396673 0.821952195 0.848424247 0.880102553 0.861230563 0.840060183 1 18.32951983 GNKS(ph)PS(ph)PPDGSPAATPEIR ddPTM_HeLa_A485_30min_R1 2 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(1)PS(1)PPDGSPAATPEIR;GNKS(1)PS(0.997)PPDGS(0.003)PAATPEIR ; 105.24 8.25E-05 688350000 296480 249390 254850 535090 387990 285260 498990 333070 276860 717370 TRUE FALSE FALSE 362430.9532 278553.9911 349129.6202 564320.6118 349360.3533 300195.7725 392376.7101 251384.0603 332423.2625 538542.8612 0.672984416 0.517236438 0.648285671 1.047865736 0.648714111 0.557422248 0.728589567 0.466785614 0.617264263 1 19.03870164 -10.16736828 4.670053447 1.000038673 0.656774811 0.320610872 0.150169281 7.30E-05 1.30E-05 0.153035981 0.037111888 6.80E-11 10.16736828 -0.343263862 GNKS(ph)PSPPDGS(ph)PAATPEIR ddPTM_HeLa_A485_30min_R1 3 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.997)PS(0.003)PPDGS(1)PAATPEIR;GNKS(0.552)PS(0.448)PPDGS(1)PAATPEIR;GNKS(0.972)PS(0.028)PPDGS(0.999)PAAT(0.001)PEIR ;; 198.83 2.09E-25 1654910000 1008540 980760 927020 1341910 1351880 1074380 1545310 1384350 1092930 1746510 TRUE FALSE FALSE 1232886.244 1095451.351 1269963.275 1415215.145 1217282.08 1130632.875 1215141.894 1044835.992 1312271.026 1311137.199 0.940318255 0.835497117 0.968596784 1.079379905 0.928417012 0.86232995 0.926784699 0.796892951 1.000864766 1 20.32238723 -5.998270258 24.99923943 0.904168976 0.955204174 0.037982896 0.079027923 160.2799256 2316384.164 0.025114724 0.028271067 1.00E-06 5.998270258 0.051035198 GNKS(ph)PSPPDGS(ph)PAATPEIR ddPTM_HeLa_A486_30min_R1 4 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.981)PS(0.019)PPDGS(1)PAATPEIR;GNKS(0.986)PS(0.014)PPDGS(1)PAATPEIR;GNKS(0.985)PS(0.015)PPDGS(1)PAATPEIR;GNKS(0.75)PS(0.25)PPDGS(1)PAATPEIR ;;; 214.08 1.71E-26 4512860000 2646430 2885340 2026860 1308860 3002690 3038550 3774530 3632740 2257560 3544610 TRUE FALSE FALSE 2460928.923 2656695.15 2811714.473 3047092.226 2626064.621 2663684.595 2830102.671 2805644.404 2453247.118 2657016.584 0.926200061 0.999879024 1.058222402 1.146809638 0.988350858 1.002509585 1.065143021 1.055937859 0.923308922 1 21.3413758 -9.604208876 14.01564357 0.999999776 1.023998132 0.00082697 0.064018756 0 0 0.063369456 0.015369351 2.49E-10 9.604208876 0.023998356 GNKS(ph)PSPPDGSPAATPEIR ddPTM_HeLa_A485_30min_R1 2 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 GNKS(0.987)PS(0.013)PPDGSPAATPEIR;GNKS(0.827)PS(0.173)PPDGSPAATPEIR ; 197.37 1.00E-25 2587050000 735470 580660 568870 857770 900230 770650 1002780 837160 656090 1215010 TRUE FALSE FALSE 899072.7642 648563.1359 779318.6857 904627.8031 810599.9403 811000.0423 788527.861 631845.1974 787761.245 912130.3676 0.985684499 0.711042148 0.85439397 0.99177468 0.888688689 0.889127334 0.864490306 0.692713695 0.863649839 1 19.79888051 -8.054577186 22.8424201 1.000000001 0.855925853 0.170390858 0.092289298 14089.17611 5896792.043 0.090929524 0.023477902 8.82E-09 8.054577186 -0.144074149 GNKS(ph)PSPPDGSPAATPEIR ddPTM_HeLa_A486_30min_R1 3 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 GNKS(0.5)PS(0.5)PPDGSPAATPEIR;GNKS(0.996)PS(0.004)PPDGSPAATPEIR;GNKS(0.974)PS(0.026)PPDGSPAATPEIR ;; 249.99 1.30E-46 2274980000 920870 1052860 768190 455130 1099950 1037790 1327120 1312280 871490 1351620 TRUE FALSE FALSE 856321.7684 969427.5391 1065653.741 1059565.641 961984.0144 909758.0213 995060.5392 1013502.491 947031.4549 1013165.554 0.845194317 0.956830337 1.05180613 1.045797142 0.949483537 0.897936193 0.98213025 1.000332558 0.934725278 1 19.9504385 -4.293797561 4.048019656 0.981951424 0.837141211 0.455398374 0.04481927 0.202501267 6.793469814 0.012342993 0.079963678 5.08E-05 4.293797561 -0.144810212 GNKSPS(ph)PPDGS(ph)PAATPEIR ddPTM_HeLa_A485_30min_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.201)PS(0.799)PPDGS(1)PAATPEIR 142.23 3.00E-08 798090000 525560 613840 530090 666310 856650 643740 948680 936380 630470 943270 TRUE FALSE FALSE 642469.0088 685623.2483 726192.3499 702708.8281 771358.9181 677445.231 745986.768 706731.3368 756999.546 708130.1486 0.907275322 0.968216435 1.025506895 0.992344175 1.089289758 0.956667686 1.053459974 0.99802464 1.069011886 1 19.43365501 -4.397914671 1.745750827 1.024054183 0.884470642 0.487772139 0.037486999 0.538358197 2.043691753 0.009599506 0.114368362 4.00E-05 4.397914671 -0.139583541 GNKSPS(ph)PPDGS(ph)PAATPEIR ddPTM_HeLa_A486_30min_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.263)PS(0.737)PPDGS(1)PAATPEIR 206.63 4.13E-25 235900000 147020 152760 108650 70927 183440 156690 234910 217850 123380 221580 TRUE FALSE FALSE 136714.6572 140654.7413 150722.1897 165121.6405 160431.2447 137359.1809 176133.0334 168250.3106 134074.6777 166094.9258 0.823111583 0.846833464 0.907446083 0.994140186 0.965900939 0.826992037 1.060435968 1.012976826 0.807217181 1 17.34164847 -4.853441708 2.839017792 0.9529284 0.829678633 0.277574332 0.075275796 0.339930505 5.440621944 0.020499449 0.054786127 1.40E-05 4.853441708 -0.123249767 GNKSPS(ph)PPDGSPAATPEIR ddPTM_HeLa_A485_30min_R1 3 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 GNKS(0.342)PS(0.658)PPDGSPAATPEIR;GNKS(0.031)PS(0.962)PPDGS(0.007)PAATPEIR;GNKS(0.369)PS(0.631)PPDGSPAATPEIR ;; 232.87 4.30E-36 3839440000 1055070 873714 872849 1268852 1258530 1122290 1538800 1285860 1044430 1711370 TRUE FALSE FALSE 1289766.682 975887.252 1195752.167 1338166.172 1133226.334 1181051.369 1210022.809 970500.8188 1254037.521 1284756.954 1.003899358 0.759589001 0.930722471 1.041571456 0.88205503 0.919279997 0.94183013 0.755396432 0.976089304 1 20.29306403 GNKSPS(ph)PPDGSPAATPEIR ddPTM_HeLa_A486_30min_R1 2 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 GNKS(0.172)PS(0.828)PPDGSPAATPEIR;GNKS(0.411)PS(0.589)PPDGSPAATPEIR ; 152.07 5.87E-09 5984960000 716980 742070 524850 326640 810150 790530 961500 897880 615470 925150 TRUE FALSE FALSE 666723.4045 683265.6706 728085.976 760434.4275 708533.4327 693002.4461 720922.5303 693452.3246 668819.4352 693486.4183 0.96140802 0.985261791 1.049892192 1.096538313 1.021697634 0.999302117 1.03956258 0.999950837 0.964430474 1 19.4035081 -7.50135571 6.108858059 0.981912799 1.023443051 0.168180994 0.035818562 0.297244087 41.85378543 0.023733936 0.010259984 3.15E-08 7.50135571 0.041530253 GNKSPSPPDGS(ph)PAATPEIR ddPTM_HeLa_A485_30min_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 GNKS(0.007)PS(0.004)PPDGS(0.989)PAATPEIR 120.33 6.52E-07 0 95672 237970 152660 81110 185180 234590 260790 406090 149210 110050 TRUE FALSE FALSE 116953.9063 265798.5214 209135.2867 85540.83392 166742.829 246872.7697 205070.086 306495.7908 179155.0784 82616.56032 1.415623041 3.217254754 2.531396682 1.035395732 2.018273677 2.988175357 2.482191043 3.709859011 2.168512919 1 16.33414338 -6.240537614 23.4826303 2.639891582 2.079882067 0.040152952 0.850641715 973.085859 1093237.419 0.277695849 0.277313113 5.75E-07 6.240537614 -0.560009515 GNLELRPGGAHPGT(ph)CSPSRPGS ddPTM_HeLa_A485_30min_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 GNLELRPGGAHPGT(0.9)CS(0.086)PS(0.013)RPGS 99.171 0.0035312 990160000 241790 286010 341160 228150 356140 297140 342830 369070 269730 319220 TRUE FALSE FALSE 295575.3513 319456.3815 467369.2809 240613.2568 320681.4511 312697.7909 269581.5698 278555.0038 323862.3369 239644.3288 1.233391805 1.333043778 1.950262221 1.004043192 1.338155811 1.304841189 1.124923637 1.162368437 1.351429172 1 17.87053527 -5.317200715 24.99999168 1.199482291 1.488320682 0.327765712 0.20996076 361.0653382 161878.8782 0.058596028 0.086911996 4.82E-06 5.317200715 0.288838391 GNLELRPGGAHPGT(ph)CSPSRPGS ddPTM_HeLa_A486_30min_R1 2 GNLELRPGGAHPGTCSPSRPGS 22 2 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 GNLELRPGGAHPGT(0.652)CS(0.337)PS(0.01)RPGS;GNLELRPGGAHPGT(0.488)CS(0.488)PS(0.025)RPGS ; 151.05 5.61E-09 1572750000 684050 875280 816450 168591 956910 677710 796970 810690 681700 739610 TRUE FALSE FALSE 636101.6274 805919.6251 1132601.305 392488.3681 836885.425 594101.0307 597559.6765 626113.5842 740790.3049 554406.8419 1.147355298 1.453661038 2.042906435 0.707942865 1.509514966 1.071597581 1.077836043 1.12933957 1.336185359 1 19.08058554 -5.268040735 24.99995842 1.136897409 1.538542935 0.323340544 0.283500853 637.9839222 2416105.821 0.077721696 0.118382745 5.39E-06 5.268040735 0.401645526 GNLELRPGGAHPGTCS(ph)PSRPGS ddPTM_HeLa_A485_30min_R1 3 GNLELRPGGAHPGTCSPSRPGS 22 2 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 GNLELRPGGAHPGT(0.003)CS(0.996)PS(0.001)RPGS;GNLELRPGGAHPGT(0.039)CS(0.697)PS(0.263)RPGS;GNLELRPGGAHPGT(0.035)CS(0.949)PS(0.016)RPGS(0.001) ;; 124.07 1.27E-06 3976270000 1161630 1492740 1688550 1201490 1834320 1501730 1739220 1848620 1470950 1655280 TRUE FALSE FALSE 1420030.586 1667302.958 2313214.911 1267124.356 1651688.66 1580358.261 1367621.439 1395243.046 1766156.173 1242649.159 1.142744576 1.341732657 1.861518913 1.019695983 1.329167326 1.271765445 1.100569239 1.12279724 1.421283038 1 20.2449876 GNLELRPGGAHPGTCS(ph)PSRPGS ddPTM_HeLa_A486_30min_R1 3 GNLELRPGGAHPGTCSPSRPGS 22 2 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 GNLELRPGGAHPGT(0.018)CS(0.964)PS(0.018)RPGS;GNLELRPGGAHPGT(0.081)CS(0.755)PS(0.163)RPGS;GNLELRPGGAHPGT(0.047)CS(0.953)PS(0.001)RPGS ;; 153.81 3.53E-10 3252500000 1827880 2184180 2049080 537326 2472730 1970410 2172180 2218510 1827650 2037420 TRUE FALSE FALSE 1699755.051 2011097.622 2842538.652 1250922.083 2162577.146 1727320.848 1628677.589 1713403.703 1986072.174 1527236.771 1.112961057 1.316821112 1.861229841 0.819075409 1.416006468 1.131010516 1.066421147 1.121897885 1.300435016 1 20.54249231 -5.277870416 24.95558994 1.137494836 1.4189858 0.271647582 0.230091177 1104.16253 1677008.547 0.06379147 0.094923945 5.27E-06 5.277870416 0.281490964 GNLLHFPS(ph)SQGEEEKEK ddPTM_HeLa_A485_30min_R1 1 GNLLHFPSSQGEEEKEK 17 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.666)S(0.334)QGEEEKEK 167.89 2.47E-12 490110000 400480 302070 188690 710930 318720 356020 552930 432630 294070 827790 TRUE FALSE FALSE 489565.3944 337394.4588 258494.283 749766.3057 286987.1177 374660.6567 434791.9885 326526.8142 353087.1516 621437.1873 0.787795459 0.542926084 0.415962045 1.206503764 0.461811947 0.602893847 0.699655568 0.525438163 0.568178343 1 19.24524905 -10.86837651 6.135595295 1.055478385 0.643784914 0.198145219 0.213798359 0.113434965 0.002433455 0.14472727 0.049011445 1.35E-11 10.86837651 -0.411693471 GNLLHFPSS(ph)QGEEEK ddPTM_HeLa_A485_30min_R1 1 GNLLHFPSSQGEEEK 15 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.009)S(0.991)QGEEEK 164.99 4.08E-12 166840000 339310 398360 279830 382200 279640 348390 360470 327720 267270 462220 TRUE FALSE FALSE 414788.3389 444944.7367 383350.7617 403078.6182 251798.0597 366631.1617 283452.6397 247346.1562 320908.6375 346997.0605 1.19536557 1.282272351 1.104766597 1.161619691 0.72564897 1.056582903 0.816873317 0.712819168 0.924816588 1 18.40456392 -5.688530501 7.544279955 0.865229932 1.189797215 0.662806496 0.109414765 0.140826939 12.42891311 0.032147958 0.041459582 2.05E-06 5.688530501 0.324567283 GNLLHFPSS(ph)QGEEEK ddPTM_HeLa_A486_30min_R1 1 GNLLHFPSSQGEEEK 15 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.026)S(0.974)QGEEEK 122.49 2.78E-05 241390000 245750 219510 120530 61805 151560 194990 203130 195240 180760 335430 TRUE FALSE FALSE 228524.1941 202115.2282 167202.4439 143885.1635 132549.9316 170934.1163 152304.7255 150788.1141 196428.4223 251436.1447 0.908875668 0.803843172 0.66498969 0.5722533 0.527171349 0.679831122 0.605739186 0.59970739 0.781225876 1 17.93983253 -8.0575655 4.689875947 0.999892486 0.665365425 0.469408052 0.106983696 0.268254544 16.9105766 0.113286716 0.029581087 8.76E-09 8.0575655 -0.334527061 GNLLHFPSS(ph)QGEEEKEK ddPTM_HeLa_A485_30min_R1 4 GNLLHFPSSQGEEEKEK 17 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.001)S(0.999)QGEEEKEK;GNLLHFPS(0.001)S(0.999)QGEEEKEK;GNLLHFPS(0.017)S(0.983)QGEEEKEK;GNLLHFPS(0.002)S(0.998)QGEEEKEK ;;; 214.74 1.38E-26 4084850000 3339980 2391580 1408450 5435660 2348370 3101910 4703040 3639280 2027650 6785630 TRUE FALSE FALSE 4082947.028 2671254.477 1929494.265 5732596.342 2114558.037 3264321.211 3698197.084 2746740.874 2434580.756 5094097.321 0.801505502 0.524382301 0.378770593 1.125340955 0.415099654 0.640804642 0.72597692 0.539200706 0.477921917 1 22.28039509 -10.42749561 3.231873641 1.005291677 0.624605451 0.224652368 0.20874636 568708353.3 745227001 27633095.57 0.050999306 3.74E-11 10.42749561 -0.380686226 GNLLHFPSS(ph)QGEEEKEK ddPTM_HeLa_A486_30min_R1 4 GNLLHFPSSQGEEEKEK 17 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.001)S(0.999)QGEEEKEK;GNLLHFPS(0.004)S(0.996)QGEEEKEK;GNLLHFPS(0.001)S(0.999)QGEEEKEK;GNLLHFPS(0.004)S(0.996)QGEEEKEK ;;; 239.03 1.56E-42 6400120000 7124750 5668530 1927740 2875960 3547440 6939920 8797330 6951450 4164240 13007700 TRUE FALSE FALSE 6625341.817 5219335.038 2674212.555 6695380.223 3102486.997 6083743.23 6596144.985 5368756.584 4525199.676 9750487.254 0.67948828 0.535289663 0.274264504 0.686671348 0.318187893 0.623942483 0.676493883 0.550614184 0.46409985 1 23.21704288 -13.99999974 0.388674972 7.982962062 0.522184248 0.49931858 0.139239613 548.6165139 4.003545917 3238.335595 0.090531585 1.00E-14 13.99999974 -7.460777814 GNLLHFPSS(ph)QGEEEKEKLEGDHTIR ddPTM_HeLa_A486_30min_R1 3 GNLLHFPSSQGEEEKEKLEGDHTIR 25 2 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.014)S(0.986)QGEEEKEKLEGDHTIR;GNLLHFPS(0.147)S(0.846)QGEEEKEKLEGDHT(0.007)IR;GNLLHFPS(0.105)S(0.895)QGEEEKEKLEGDHTIR ;; 129.64 2.15E-06 2154000000 1247360 1054340 665250 1056710 1585220 1789790 2921700 2773160 921170 2601660 TRUE FALSE FALSE 1159926.505 970790.2586 922852.616 2460074.283 1386386.926 1568983.907 2190659.757 2141772.006 1001017.757 1950187.402 0.594776945 0.497793319 0.473212274 1.261455325 0.710899334 0.804529814 1.123307306 1.098239074 0.51329311 1 20.89518133 -5.231070937 24.97193704 0.928006171 0.519513988 0.450996536 0.206432111 621.6316258 511166.2896 0.055101919 0.095424258 5.87E-06 5.231070937 -0.408492183 GNNFNHIS(ph)PIPPVPHPR ddPTM_HeLa_A485_30min_R1 3 GNNFNHISPIPPVPHPR 17 0 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 GNNFNHIS(1)PIPPVPHPR;GNNFNHIS(1)PIPPVPHPR;GNNFNHIS(1)PIPPVPHPR ;; 88.176 0.00073703 559880000 359920 546550 537320 372020 589400 480920 557100 584500 463790 519590 TRUE FALSE FALSE 439982.9623 610464.2681 736097.0278 392342.5106 530717.2665 506100.2276 438071.0339 441150.4585 556868.3989 390065.7753 1.127971204 1.565029046 1.887110006 1.005836798 1.360584035 1.297474066 1.12306965 1.130964279 1.427626913 1 18.5733579 -5.279692548 24.9873268 1.206198313 1.530536051 0.333447524 0.216060916 932.3436984 1276311.946 0.060600814 0.090080015 5.25E-06 5.279692548 0.324337738 GNNFNHIS(ph)PIPPVPHPR ddPTM_HeLa_A486_30min_R1 2 GNNFNHISPIPPVPHPR 17 0 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 GNNFNHIS(1)PIPPVPHPR;GNNFNHIS(1)PIPPVPHPR ; 106.86 0.00014398 844830000 262585 345741 330862 110618 375044 282557 327078 309619 295308 319829 TRUE FALSE FALSE 244179.1475 318343.224 458980.6272 257524.2943 328002.4844 247697.9902 245239.6249 239125.5126 320905.5352 239741.7367 1.018509129 1.327859005 1.914479446 1.074173808 1.36814928 1.033186768 1.022932545 0.997429634 1.338546803 1 17.87112156 -6.005107453 1.796908868 1.076992675 1.386737879 0.204404155 0.246280988 0.546290669 3.56360654 0.095196051 0.104563365 9.88E-07 6.005107453 0.309745204 GNPGLHSPMLDLDNDT(ph)RPSVLGHLSQTASLKR ddPTM_HeLa_A485_30min_R1 1 GNPGLHSPMLDLDNDTRPSVLGHLSQTASLKR 32 2 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 GNPGLHS(0.012)PMLDLDNDT(0.198)RPS(0.198)VLGHLS(0.198)QT(0.198)AS(0.198)LKR 44.641 0.032622 772600000 105010 124380 132860 115360 170690 126290 190590 169680 116040 180820 TRUE FALSE FALSE 128369.1122 138925.159 182010.4428 121661.8247 153695.5043 132902.3491 149868.8895 128065.714 139328.1636 135744.9017 0.945664335 1.02342819 1.340827099 0.896253363 1.132237766 0.979059599 1.104048017 0.943429273 1.026397027 1 17.05053849 -6.862546212 0.975705641 0.992908531 1.071176699 0.044523 0.118820141 1.87254427 3.423826205 0.091713673 0.04816687 1.37E-07 6.862546212 0.078268169 GNPTVEVDLFT(ph)SK ddPTM_HeLa_A486_30min_R1 1 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 1 0 GNPTVEVDLFT(0.608)S(0.392)K 84.566 0.013175 90922000 137000 134600 94104 99260 125420 143820 172970 177370 111430 209060 TRUE FALSE FALSE 127397.0075 123933.8058 130543.589 231082.2963 109688.6541 126076.9507 129691.0765 136986.723 121088.8421 156710.0152 0.812947451 0.790848023 0.833026458 1.474585373 0.699946675 0.804523887 0.827586395 0.874141469 0.772693704 1 17.25773786 GNPTVEVDLFTS(ph)K ddPTM_HeLa_A485_30min_R1 2 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 1 0 GNPTVEVDLFT(0.199)S(0.801)K;GNPTVEVDLFT(0.035)S(0.965)K ; 204.18 3.40E-22 96572000 700000 714080 615880 1190140 905010 812220 1113660 1067960 649210 1432190 TRUE FALSE FALSE 855712.585 797585.4443 843719.6409 1255154.335 814904.0267 854746.5833 875717.4432 806041.1355 779500.4921 1075171.391 0.795884817 0.741821677 0.784730368 1.167399306 0.757929418 0.794986354 0.814491021 0.749686183 0.725001148 1 20.03613522 GNPTVEVDLFTS(ph)K ddPTM_HeLa_A486_30min_R1 2 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 1 0 GNPTVEVDLFT(0.221)S(0.779)K;GNPTVEVDLFT(0.23)S(0.77)K ; 163.9 1.44E-07 116510000 477140 429600 260143 349960 432940 510480 600930 588030 379790 743670 TRUE FALSE FALSE 443694.95 395556.9314 360877.3365 814724.566 378636.6282 447502.1678 450570.958 454148.4056 412710.503 557450.1915 0.795936492 0.709582555 0.647371446 1.461519932 0.679229524 0.802766193 0.808271241 0.814688761 0.740354043 1 19.08848338 -11.57404086 2.117447259 3.753694098 0.832429135 0.051828696 0.219123425 9559108.501 760623.893 125949605.5 0.05473862 2.67E-12 11.57404086 -2.921264963 GNPTVEVDLFTSK ddPTM_HeLa_A485_30min_R1 2 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 321.71 1.27E-77 1031660000 975910 1231980 1089170 1017430 1353550 1283430 1555820 1697750 1128030 1415810 FALSE FALSE TRUE 1192997.813 1376049.344 1492099.307 1073009.625 1218785.809 1350628.41 1223406.347 1281374.151 1354415.274 1062874.623 1.122425719 1.29464879 1.403833787 1.009535463 1.14668822 1.270731638 1.151035428 1.205574131 1.274294488 1 20.01954 -10.59808373 2.672974641 0.982363605 1.20936325 0.266551156 0.103879012 18927874.16 17659639.3 2343520.558 0.028144871 2.52E-11 10.59808373 0.226999645 GNPTVEVDLFTSK ddPTM_HeLa_A486_30min_R1 3 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;; ;; 310.51 1.39E-76 653900000 1172060 1191130 893528 462299 1353050 1124270 1325680 1304660 966886 1399380 FALSE FALSE TRUE 1089904.647 1096740.521 1239525.971 1076255.435 1183337.852 985568.9981 993980.8424 1007617.399 1050696.457 1048966.14 1.039027482 1.045544255 1.181664426 1.026015421 1.12809919 0.939562261 0.947581437 0.960581434 1.001649546 1 20.00053668 -6.2666307 24.9994488 0.966017929 1.084126469 0.598280935 0.046733728 298.6819783 1438337.061 0.015981511 0.014506597 5.41E-07 6.2666307 0.11810854 GNRES(ph)DGFREEK ddPTM_HeLa_A485_30min_R1 1 GNRESDGFREEK 12 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GNRES(1)DGFREEK 110.38 0.00029697 1231800000 542130 452540 556630 836810 860010 597370 777030 658530 686160 1067000 TRUE FALSE FALSE 662724.9482 505460.6164 762550.6003 882522.8114 774384.3847 628647.3695 611011.1927 497024.485 823866.0182 801016.5367 0.827354889 0.631023947 0.951978599 1.101753548 0.966752057 0.784811974 0.76279473 0.620492165 1.028525605 1 19.6114725 -8.809417653 14.4610552 1.000002299 0.848413758 0.076747677 0.152439109 0 0 0.157588021 0.038220709 1.55E-09 8.809417653 -0.151588541 GNRES(ph)DGFREEK ddPTM_HeLa_A486_30min_R1 1 GNRESDGFREEK 12 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GNRES(1)DGFREEK 77.222 0.0055934 899410000 635650 831670 576330 452000 1038400 938090 1146800 1049800 628870 930030 TRUE FALSE FALSE 591094.2175 765765.4403 799500.4107 1052278.843 908154.1893 822357.9936 859858.5104 810783.457 683380.9579 697144.4345 0.847879131 1.098431548 1.146821765 1.509412958 1.302677242 1.179609207 1.23340081 1.163006426 0.980257353 1 19.41109806 -7.706370654 4.402268007 0.98718686 1.199394033 0.197056186 0.156646062 0.338239345 12.91222552 0.134721506 0.043556114 1.97E-08 7.706370654 0.212207173 GNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_A485_30min_R1 6 GNRGSGGGGGGGGQGSTNYGK 21 1 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK ;;;;; 220.1 7.71E-36 4914940000 948920 972210 959840 890124 1321520 1018500 1274240 1312470 1015550 1262870 TRUE FALSE FALSE 1160003.98 1085901.502 1314924.758 938749.2202 1189944.829 1071827.085 1001988.214 990584.6746 1219361.57 948059.7504 1.223555772 1.145393528 1.386964015 0.990179385 1.255136955 1.130548032 1.05688298 1.044854688 1.286165317 1 19.85461846 -5.638010079 1.013055405 1.107250829 1.228735737 0.147621404 0.116521591 1.136036193 2.448803278 0.049574401 0.089098909 2.30E-06 5.638010079 0.121484908 GNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_A486_30min_R1 6 GNRGSGGGGGGGGQGSTNYGK 21 1 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK ;;;;; 202.26 8.24E-27 3019260000 810164 861947 730049 370381 1052691 851630 999887 1036682 707782 922676 TRUE FALSE FALSE 753375.6873 793643.1806 1012743.524 862265.686 920652.6788 746564.5493 749704.6969 800652.1392 769133.1136 691631.924 1.089272576 1.147493563 1.464281056 1.246711807 1.331130977 1.079424653 1.083964853 1.157627506 1.112055541 1 19.39964494 -6.273241553 24.78698034 1.096300615 1.26084202 0.408954583 0.101257878 758.2358697 1592445.397 0.037225793 0.033094304 5.33E-07 6.273241553 0.164541405 GNRT(ph)DGS(ph)ISGDRQPVTVADYISR ddPTM_HeLa_A485_30min_R1 1 GNRTDGSISGDRQPVTVADYISR 23 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 GNRT(0.947)DGS(0.881)IS(0.164)GDRQPVT(0.004)VADYIS(0.003)R 69.133 0.0068971 1507100000 658130 1171200 1210400 639110 1464500 1314700 1389400 1883300 1221300 942370 TRUE FALSE FALSE 804528.748 1308161.652 1658177.329 674022.961 1318689.238 1383535.659 1092543.34 1421417.722 1466403.708 707454.502 1.137216239 1.849110647 2.343864269 0.9527439 1.863991584 1.955653198 1.544330182 2.009200193 2.072788714 1 19.43227784 GNRTDGS(ph)IS(ph)GDRQPVTVADYISR ddPTM_HeLa_A485_30min_R1 3 GNRTDGSISGDRQPVTVADYISR 23 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 GNRT(0.002)DGS(0.998)IS(1)GDRQPVTVADYISR;GNRT(0.008)DGS(0.992)IS(1)GDRQPVTVADYISR;GNRT(0.157)DGS(0.844)IS(0.998)GDRQPVTVADYISR ;; 145.86 1.25E-09 743079000 137704 208100 218672 144339 265648 192318 268062 316071 212759 192105 TRUE FALSE FALSE 168335.7797 232435.4848 299567.8725 152223.8741 239199.1524 202387.4731 210788.3638 238554.0917 255457.7798 144216.7589 1.167241456 1.611709253 2.077205692 1.055521392 1.658608571 1.403356133 1.461607967 1.654135715 1.771346005 1 17.1378793 -5.27293214 24.98188088 1.466309864 1.618017888 0.063531974 0.311379905 2591.68224 5633551.279 0.086560913 0.129622932 5.33E-06 5.27293214 0.151708024 GNRTDGS(ph)IS(ph)GDRQPVTVADYISR ddPTM_HeLa_A486_30min_R1 3 GNRTDGSISGDRQPVTVADYISR 23 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 GNRT(0.175)DGS(0.878)IS(0.936)GDRQPVT(0.011)VADYISR;GNRT(0.001)DGS(0.999)IS(1)GDRQPVTVADYISR;GNRT(0.024)DGS(0.976)IS(1)GDRQPVTVADYISR ;; 156.71 2.85E-10 1465161000 916961 1015302 1097415 368992 1516828 822405 1093405 1276418 778388 1118022 TRUE FALSE FALSE 852686.7691 934845.7719 1522363.478 859032.0238 1326573.288 720945.0327 819823.5041 985805.4854 845859.2986 838062.0141 1.017450684 1.115485198 1.816528434 1.025022026 1.582905878 0.860252607 0.978237279 1.176291812 1.009303947 1 19.67669748 -6.275777335 24.90137275 1.014174133 1.312734033 0.285531276 0.242315771 1068.896999 1856395.809 0.084457607 0.07482372 5.30E-07 6.275777335 0.2985599 GNRTDGS(ph)ISGDRQPVTVADYISR ddPTM_HeLa_A485_30min_R1 2 GNRTDGSISGDRQPVTVADYISR 23 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 GNRTDGS(1)ISGDRQPVTVADYISR;GNRTDGS(1)ISGDRQPVTVADYISR ; 229.7 7.44E-39 1496940000 167530 289670 261890 158383 371800 315780 361460 432010 230690 214640 TRUE FALSE FALSE 204796.4705 323544.3867 358774.0092 167035.0622 334782.2865 332313.7525 284231.1181 326058.8701 276987.367 161134.1982 1.270968378 2.007918806 2.226554097 1.036620805 2.077661293 2.062341553 1.763940376 2.023523708 1.718985604 1 17.29790319 -8.041509192 20.25736888 0.999999984 1.822691711 0.310741313 0.358600997 744.5161796 363341.1627 0.337010984 0.087015839 9.09E-09 8.041509192 0.822691727 GNS(ph)DGYIIPINK ddPTM_HeLa_A485_30min_R1 1 GNSDGYIIPINK 12 0 H0Y3V3;H0Y5C0;B1ALU1;A0A6I8PRM6;B1ALU3;A0A6I8PTT2;A0A6I8PRJ0;O95490-2;O95490-5;O95490;O95490-7;O95490-6 H0Y3V3 ADGRL2;LPHN2 Latrophilin-2 1 0 GNS(0.999)DGY(0.001)IIPINK 58.487 0.033522 112460000 152930 147180 89725 194150 113070 154730 189970 189000 146390 344640 TRUE FALSE FALSE 186948.7509 164391.4207 122918.0113 204755.9229 101812.3538 162831.4235 149381.3576 142647.4537 175769.1302 258727.5906 0.722569829 0.63538419 0.4750866 0.791395778 0.393511776 0.629354694 0.57736926 0.551342257 0.679359823 1 17.98107439 -8.136241012 4.214460039 0.99997167 0.594883589 0.558661009 0.107213491 0.615529908 18.00994996 0.097520175 0.025552652 7.31E-09 8.136241012 -0.405088081 GNS(ph)PPSSGEACR ddPTM_HeLa_A485_30min_R1 6 GNSPPSSGEACR 12 0 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(1)PPSSGEACR;GNS(0.994)PPS(0.003)S(0.003)GEACR;GNS(0.985)PPS(0.008)S(0.008)GEACR;GNS(0.995)PPS(0.003)S(0.003)GEACR;GNS(0.942)PPS(0.029)S(0.029)GEACR;GNS(0.986)PPS(0.007)S(0.007)GEACR ;;;;; 160.79 3.15E-10 10101263000 1259752 1653293 1764238 1449153 1850394 1499980 1658321 1656400 1563729 1779518 TRUE FALSE FALSE 1539979.486 1846631.235 2416903.052 1528316.559 1666162.276 1578516.633 1304007.171 1250165.303 1877555.067 1335916.912 1.152750947 1.382294975 1.809171686 1.144020668 1.247205018 1.181597911 0.976113978 0.935810672 1.405442996 1 20.34939885 -5.475778379 24.96203754 1.123784353 1.447345208 0.355701293 0.198067055 446.2114041 236480.6242 0.056595936 0.083942366 3.34E-06 5.475778379 0.323560855 GNS(ph)PPSSGEACR ddPTM_HeLa_A486_30min_R1 6 GNSPPSSGEACR 12 0 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(0.995)PPS(0.002)S(0.003)GEACR;GNS(1)PPSSGEACR;GNS(1)PPSSGEACR;GNS(0.979)PPS(0.01)S(0.01)GEACR;GNS(0.995)PPS(0.003)S(0.003)GEACR;GNS(0.997)PPS(0.002)S(0.002)GEACR ;;;;; 170.22 1.47E-10 10011047000 1190112 1522824 1280128 461314.5 1525918 1316464 1378900 1349616 1177814 1333349 TRUE FALSE FALSE 1106691.295 1402149.88 1775827.845 1073963.47 1334523.136 1154052.057 1033884.635 1042337.899 1279907.866 999469.7318 1.107278449 1.40289379 1.776770009 1.07453326 1.335231167 1.154664338 1.034433163 1.042890911 1.28058692 1 19.93080335 -5.935316899 1.381086485 1.097768916 1.398454292 0.28085575 0.192021022 0.53932655 2.135621953 0.079897161 0.095182854 1.16E-06 5.935316899 0.300685376 GNS(ph)PPSSGEACREEK ddPTM_HeLa_A485_30min_R1 1 GNSPPSSGEACREEK 15 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(1)PPSSGEACREEK 116.09 6.83E-05 608300000 165210 244780 346360 384520 914240 385480 632800 909690 405060 622800 TRUE FALSE FALSE 201960.3945 273404.8917 474492.9772 405525.3539 823215.0555 405663.1367 497597.1105 686587.1012 486351.8266 467547.4218 0.431957028 0.584763981 1.014855296 0.867345931 1.760709218 0.867640624 1.06427089 1.468486552 1.040219246 1 18.83475317 -4.778566777 1.458634557 1.189148282 0.37818292 0.496112492 0.259200574 0.42704285 1.527114668 0.076945892 0.386194887 1.67E-05 4.778566777 -0.810965362 GNS(ph)PPSSGEACREEK ddPTM_HeLa_A486_30min_R1 4 GNSPPSSGEACREEK 15 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(0.999)PPSSGEACREEK;GNS(0.972)PPS(0.003)S(0.024)GEACREEK;GNS(0.994)PPS(0.002)S(0.004)GEACREEK;GNS(0.96)PPS(0.02)S(0.02)GEACREEK ;;; 168.3 2.04E-12 1727410000 961680 1554290 1965230 1636910 4626610 2283570 3706990 4550880 1383620 1772950 TRUE FALSE FALSE 894271.1981 1431122.4 2726219.687 3810809.205 4046297.432 2001846.351 2779461.893 3514743.969 1503553.296 1328991.78 0.672894454 1.076848195 2.05134428 2.867443774 3.044636914 1.50628949 2.091406384 2.644669457 1.13134883 1 20.34190075 -2.54147307 11.13581877 1.904002525 1.533127389 0 0.81282744 0 0 0.194787229 0 0.002874266 2.54147307 -0.370875135 GNS(ph)RPGT(ph)PSAEGGSTSSTLR ddPTM_HeLa_A486_30min_R1 2 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 GNS(1)RPGT(0.95)PS(0.049)AEGGSTSSTLR;GNS(1)RPGT(0.907)PS(0.093)AEGGSTSSTLR ; 67.076 0.0054238 6412300000 3457000 4461100 4231600 1056730 4572500 3368300 3154300 3439400 3950400 3397400 TRUE FALSE FALSE 3214682.152 4107586.189 5870188.846 2460120.844 3998974.413 2952753.392 2365060.777 2656323.702 4292823.853 2546668.927 1.262308625 1.612925083 2.305045931 0.966015181 1.570276517 1.159457109 0.928687963 1.043058119 1.685662321 1 21.28017999 -5.291001775 24.97653359 1.198372971 1.715376773 0.345507494 0.336295929 775.6350982 655313.1733 0.095224738 0.141265006 5.12E-06 5.291001775 0.517003802 GNS(ph)RPGTPSAEGGS(ph)TSSTLR ddPTM_HeLa_A485_30min_R1 2 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 GNS(0.925)RPGT(0.083)PS(0.312)AEGGS(0.376)T(0.046)S(0.221)S(0.028)T(0.008)LR;GNS(0.995)RPGT(0.005)PS(0.033)AEGGS(0.438)T(0.342)S(0.101)S(0.021)T(0.065)LR ; 182.13 2.59E-18 3180120000 1024070 1396180 1265130 997360 1182080 1084250 1199320 1061180 1151950 1303700 TRUE FALSE FALSE 1251870.839 1559451.106 1733154.233 1051843.251 1064387.965 1141019.653 943075.4845 800923.9411 1383135.799 978711.5828 1.279100871 1.593371462 1.770852889 1.07472239 1.087539969 1.16583851 0.963588764 0.818345215 1.413221038 1 19.90052425 -5.279828281 23.8679605 1.06687827 1.552334679 0.58627505 0.181998888 292.0731058 379096.998 0.050848354 0.075610698 5.25E-06 5.279828281 0.485456409 GNS(ph)RPGTPSAEGGS(ph)TSSTLR ddPTM_HeLa_A486_30min_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 GNS(0.971)RPGT(0.029)PS(0.154)AEGGS(0.496)T(0.338)S(0.011)STLR 213.71 1.44E-26 325550000 348190 432080 326730 102870 374670 332130 365880 317630 331530 390070 TRUE FALSE FALSE 323783.6791 397840.4072 453248.6061 239486.5588 327675.3949 291155.1775 274332.9541 245312.5828 360267.2873 292393.9331 1.1073543 1.360631539 1.550129995 0.819054473 1.120664138 0.995763402 0.938230664 0.838979729 1.232129831 1 18.15755385 -5.265297168 24.99929721 0.988671028 1.341497904 0.524688728 0.151430267 249.8785773 1619268.38 0.041541068 0.064318511 5.43E-06 5.265297168 0.352826877 GNS(ph)RPGTPSAEGGSTSST(ph)LR ddPTM_HeLa_A486_30min_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 GNS(0.907)RPGT(0.093)PS(0.031)AEGGS(0.007)T(0.029)S(0.334)S(0.216)T(0.383)LR 218.47 4.65E-34 391500000 393810 512760 364590 110000 442200 428020 438640 397310 408640 423210 TRUE FALSE FALSE 366205.9526 472127.0302 505769.0121 256085.5591 386735.1526 375215.2442 328887.6325 306851.1862 444061.2442 317235.4614 1.154366385 1.488254271 1.594301627 0.807241277 1.219079201 1.182765768 1.036730355 0.967266348 1.399784382 1 18.27519452 -5.249014908 24.9742781 1.093518478 1.419902103 0.398984228 0.182480338 761.3727709 1530423.495 0.048451835 0.083162945 5.64E-06 5.249014908 0.326383624 GNS(ph)SDHEGCWNEESWTFSQSGTSGSK ddPTM_HeLa_A485_30min_R1 1 GNSSDHEGCWNEESWTFSQSGTSGSK 26 0 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 GNS(0.5)S(0.5)DHEGCWNEESWTFSQSGTSGSK 114 0.00021698 78042000 39155 41998 41498 52818 71591 42816 56389 47058 45576 76376 TRUE FALSE FALSE 47864.89467 46909.30077 56849.83708 55703.3136 64463.14867 45057.77955 44341.02949 35516.95172 54722.68515 57336.8688 0.834801336 0.818135028 0.991505784 0.971509515 1.124287915 0.785843045 0.773342361 0.619443518 0.954406585 1 15.8071755 GNS(ph)SDHEGCWNEESWTFSQSGTSGSK ddPTM_HeLa_A486_30min_R1 1 GNSSDHEGCWNEESWTFSQSGTSGSK 26 0 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 GNS(0.5)S(0.5)DHEGCWNEESWTFSQSGTSGSK 118.22 0.00011802 137780000 88506 96261 73629 18597 120090 110780 105780 115800 107320 77609 TRUE FALSE FALSE 82302.18645 88632.92778 102140.1207 43294.75584 105027.1924 97113.08993 79312.72517 89434.8679 116622.584 58175.20125 1.414729725 1.523551718 1.755733001 0.744213254 1.80536019 1.669321083 1.363342515 1.537336631 2.004678652 1 15.82811668 GNSRPGT(ph)PS(ph)AEGGSTSSTLR ddPTM_HeLa_A485_30min_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 GNS(0.011)RPGT(0.989)PS(0.979)AEGGS(0.019)T(0.002)SSTLR 205.65 3.30E-25 338880000 315650 435160 440960 319510 401590 368610 394750 366010 383240 420190 TRUE FALSE FALSE 385865.2535 486048.1766 604089.4539 336964.0223 361606.2895 387909.8496 310408.4377 276245.4736 460152.7527 315444.366 1.223243447 1.540836448 1.915042774 1.068220132 1.14633935 1.229725084 0.984035447 0.875734371 1.458744559 1 18.26702606 -5.29233473 24.80328114 1.105176236 1.557820504 0.480147758 0.214895772 500.416574 401741.2941 0.060466577 0.089698137 5.10E-06 5.29233473 0.452644268 GNSRPGT(ph)PSAEGGS(ph)TSSTLR ddPTM_HeLa_A485_30min_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 GNS(0.397)RPGT(0.6)PS(0.216)AEGGS(0.689)T(0.064)S(0.018)S(0.013)T(0.003)LR 179.41 1.24E-17 1995400000 715130 911400 984540 678630 783760 740540 800220 756820 836430 850130 TRUE FALSE FALSE 874208.2013 1017980.302 1348762.316 715701.8385 705726.1025 779313.5293 629246.4598 571208.7084 1004293.829 638208.2365 1.369785207 1.5950598 2.11335774 1.121423695 1.105792846 1.221096007 0.985957911 0.89501933 1.573614647 1 19.2836677 -5.298582719 23.65449543 1.121523911 1.682966739 0.530507911 0.242908501 220.3585703 140333.3422 0.067766379 0.100518278 5.03E-06 5.298582719 0.561442828 GNSRPGT(ph)PSAEGGSTSSTLR ddPTM_HeLa_A485_30min_R1 2 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 GNS(0.001)RPGT(0.956)PS(0.033)AEGGS(0.006)T(0.001)S(0.001)STLR;GNSRPGT(0.525)PS(0.075)AEGGS(0.031)T(0.12)S(0.188)S(0.048)T(0.012)LR ; 104.84 3.07E-05 680630000 248037 321820 299470 187691 254978 219144 227875 219566 216127 226088 TRUE FALSE FALSE 303211.9749 359454.0495 410256.415 197944.0841 229591.495 230618.041 179187.6447 165717.0942 259501.7065 169728.4224 1.786453739 2.117818833 2.417134438 1.166240051 1.352699163 1.358747331 1.055731516 0.976366196 1.528923104 1 17.37286865 -5.272037732 24.87933692 1.210819389 2.108203985 0.784920413 0.216265816 281.4025175 660584.0347 0.061212919 0.09187405 5.35E-06 5.272037732 0.897384596 GNSRPGT(ph)PSAEGGSTSSTLR ddPTM_HeLa_A486_30min_R1 3 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 GNSRPGT(0.996)PS(0.004)AEGGSTSSTLR;GNS(0.001)RPGT(0.997)PS(0.002)AEGGSTSSTLR;GNSRPGT(0.633)PS(0.122)AEGGS(0.122)T(0.122)S(0.001)STLR ;; 199.17 8.68E-22 7857500000 2501720 2232190 1988448 585770 2222540 1882747 1956050 2009250 1734049 2127370 TRUE FALSE FALSE 2326362.347 2055303.135 2758428.318 1363702.163 1943768.309 1650472.818 1466625.601 1551787.637 1884357.764 1594662.705 1.458842888 1.288863863 1.729787941 0.855166524 1.218921282 1.034998067 0.919708974 0.973113394 1.181665413 1 20.60481987 -5.268087372 24.99949855 1.029060943 1.472134798 0.688795225 0.14341976 292.11309 1098479.185 0.039069698 0.05948297 5.39E-06 5.268087372 0.443073855 GNSRPGTPSAEGGS(ph)TSSTLR ddPTM_HeLa_A485_30min_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 GNSRPGT(0.221)PS(0.221)AEGGS(0.232)T(0.232)S(0.083)S(0.01)T(0.001)LR 253.53 2.16E-57 583150000 280150 400580 358620 203380 314200 264610 252010 238350 236620 232460 TRUE FALSE FALSE 342468.401 447424.3464 491288.4614 214490.1344 282917.1448 278464.5704 198166.0048 179894.2888 284107.4636 174512.0001 1.962434679 2.563860056 2.815213058 1.229085302 1.621190202 1.595675772 1.135543714 1.03084194 1.628011045 1 17.41296672 -5.269247399 24.99764335 1.337678946 2.458838354 0.752521453 0.296059171 278.6252704 892028.2213 0.084630184 0.128141288 5.38E-06 5.269247399 1.121159408 GNTAAYLLYAFTR ddPTM_HeLa_A486_30min_R1 2 GNTAAYLLYAFTR 13 0 P54136-2;P54136 P54136-2 RARS "Arginine--tRNA ligase, cytoplasmic" 0 0 ; ; 148.62 8.67E-05 32448000 14284.4 20371.3 19659.8 5823.2 22489 16313.5 18980.7 19766.2 17155.1 18250.1 FALSE FALSE TRUE 13283.13732 18757.004 27272.60107 13556.70389 19668.21992 14300.90623 14231.5281 15265.86775 18642.11788 13680.15617 0.970978486 1.37111037 1.99358843 0.990975813 1.437718961 1.045375948 1.040304506 1.115913266 1.362712358 1 13.73979708 -5.867861336 1.69150592 1.126430541 1.405796932 0.126738317 0.284038444 0.726092109 4.283122255 0.106564728 0.130644365 1.36E-06 5.867861336 0.279366391 GNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK ddPTM_HeLa_A485_30min_R1 2 GNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 49 1 P68104;A0A087WVQ9;A0A087WV01 P68104 EEF1A1 Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 ; ; 253.45 1.89E-106 54098000 63209 62822 44277 52618 75843 72703 97127 124950 57154 93539 FALSE FALSE TRUE 77269.62398 70168.48642 60656.90482 55492.3881 68291.80462 76509.61666 76375.023 94305.81659 68624.28355 70221.44876 1.100370689 0.999245781 0.863794551 0.790248408 0.972520588 1.089547681 1.087630978 1.34297737 0.977255308 1 16.09962414 -6.279936058 3.09732608 1.125493715 0.932173289 0.285033249 0.120243768 0.304635447 5.979885263 0.045499466 0.041763012 5.25E-07 6.279936058 -0.193320426 GNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK ddPTM_HeLa_A486_30min_R1 1 GNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 49 1 P68104;A0A087WVQ9;A0A087WV01 P68104 EEF1A1 Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 277.87 1.73E-124 17596000 31411 22542 18609 12105 33704 27710 36050 33434 20167 35021 FALSE FALSE TRUE 29209.25111 20755.68982 25814.90317 28181.05175 29476.53004 24291.42193 27029.9087 25821.80806 21915.0918 26251.51365 1.112669216 0.790647355 0.983368179 1.073501975 1.122850683 0.925334145 1.029651435 0.983631207 0.834812502 1 14.68011299 -9.416647402 6.5584954 1.000002572 0.984658384 0.0020651 0.104411492 0 0 0.100791608 0.024445556 3.83E-10 9.416647402 -0.015344188 GNVFS(ph)SPTAAGT(ph)PNKETAGLK ddPTM_HeLa_A485_30min_R1 1 GNVFSSPTAAGTPNKETAGLK 21 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 2 0 GNVFS(0.526)S(0.473)PT(0.218)AAGT(0.778)PNKET(0.005)AGLK 73.341 0.00038989 0 151510 115770 74273 211260 169610 123210 210870 211870 101960 270200 TRUE FALSE FALSE 185212.8768 129308.2944 101749.6735 222800.5989 152723.0329 129661.0851 165815.9019 159908.5503 122422.4368 202844.1127 0.913079874 0.637476201 0.501615118 1.098383364 0.752908383 0.639215422 0.817454841 0.788332223 0.603529652 1 17.6300119 -10.34795388 3.068440364 1.002447585 0.7497462 0.176440716 0.16188855 33008994.78 42583552.87 742064.3303 0.040621197 4.49E-11 10.34795388 -0.252701385 GNVFS(ph)SPTAAGTPNKETAGLK ddPTM_HeLa_A486_30min_R1 1 GNVFSSPTAAGTPNKETAGLK 21 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 GNVFS(0.495)S(0.495)PT(0.01)AAGTPNKETAGLK 71.656 0.0027045 838380000 392800 358540 234150 186600 416660 388230 503390 500690 319930 471570 TRUE FALSE FALSE 365266.7484 330127.9846 324819.1508 434414.2302 364398.6176 340334.1298 377436.4977 386693.817 347661.79 353485.8026 1.033327918 0.933921482 0.918902961 1.228943927 1.030872004 0.96279434 1.067755748 1.093944408 0.983524055 1 18.43129275 GNVFSS(ph)PTAAGT(ph)PNK ddPTM_HeLa_A486_30min_R1 1 GNVFSSPTAAGTPNK 15 0 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 2 0 GNVFS(0.21)S(0.788)PT(0.033)AAGT(0.969)PNK 100.77 0.0014288 167630000 277040 379500 261680 130050 338160 372070 366330 351180 261690 366390 TRUE FALSE FALSE 257620.9266 349427.0379 363009.504 302762.9724 295744.8196 326167.7863 274670.3594 271223.9802 284373.4999 274643.5592 0.938019182 1.272292854 1.321747741 1.102385118 1.076831441 1.187603989 1.000097582 0.987549029 1.035427522 1 18.06720093 -6.76723465 24.96174262 1.004730913 1.157722646 0.330558375 0.100040021 166.4214745 716811.7764 0.042400361 0.029447405 1.71E-07 6.76723465 0.152991733 GNVFSS(ph)PTAAGT(ph)PNKETAGLK ddPTM_HeLa_A485_30min_R1 4 GNVFSSPTAAGTPNKETAGLK 21 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 2 0 GNVFS(0.128)S(0.871)PT(0.001)AAGT(0.999)PNKET(0.001)AGLK;GNVFS(0.085)S(0.826)PT(0.089)AAGT(1)PNKETAGLK;GNVFS(0.164)S(0.821)PT(0.014)AAGT(1)PNKETAGLK;GNVFS(0.007)S(0.667)PT(0.326)AAGT(1)PNKETAGLK ;;; 242.41 1.66E-46 8528700000 5814120 4132780 2885040 7405630 6587130 5387940 8359180 8479280 4202550 9431100 TRUE FALSE FALSE 7107450.936 4616072.671 3952336.353 7810180.815 5931292.208 5670044.207 6573172.905 6399723.285 5045963.237 7080100.337 1.003863024 0.651978426 0.558231687 1.10311725 0.837741264 0.800842352 0.928401095 0.903902908 0.712696572 1 22.75533838 -5.251793729 24.99671092 0.888791335 0.729419809 0.199891716 0.145627063 1132.682676 2935342.057 0.039274738 0.066922687 5.60E-06 5.251793729 -0.159371525 GNVFSS(ph)PTAAGT(ph)PNKETAGLK ddPTM_HeLa_A486_30min_R1 6 GNVFSSPTAAGTPNKETAGLK 21 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 2 0 GNVFS(0.019)S(0.973)PT(0.008)AAGT(1)PNKETAGLK;GNVFS(0.025)S(0.965)PT(0.01)AAGT(1)PNKETAGLK;GNVFS(0.057)S(0.943)PTAAGT(1)PNKETAGLK;GNVFS(0.123)S(0.863)PT(0.014)AAGT(1)PNKETAGLK;GNVFS(0.003)S(0.996)PT(0.001)AAGT(1)PNKETAGLK;GNVFS(0.085)S(0.915)PT(0.001)AAGT(1)PNKETAGLK ;;;;; 229.86 4.06E-36 13942050000 9427460 8250860 4268250 5115930 8229830 10527870 14106450 12692080 6298600 13478500 TRUE FALSE FALSE 8766643.737 7597031.804 5921030.708 11910143.58 7197567.981 9229048.439 10576867.01 9802370.45 6844567.719 10103395.87 0.867692789 0.75192855 0.586043622 1.178825787 0.71239097 0.913460044 1.046862574 0.970205521 0.677452196 1 23.26833695 -5.239039969 24.99970937 0.922521306 0.736892376 0.250528981 0.152910252 1189.514462 1327600.949 0.040599519 0.070251695 5.77E-06 5.239039969 -0.18562893 GNVFSS(ph)PTAAGTPNK ddPTM_HeLa_A485_30min_R1 1 GNVFSSPTAAGTPNK 15 0 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 GNVFSS(1)PTAAGTPNK 314.35 5.82E-78 223480000 312590 258750 244130 390900 400160 262370 303100 275950 330380 544240 TRUE FALSE FALSE 382124.5671 289008.5617 334443.8461 412253.8772 360318.6654 276107.2875 238340.2089 208272.8298 396684.2356 408570.984 0.935270937 0.707364382 0.818569745 1.009014084 0.881899791 0.675787803 0.583350796 0.509759229 0.970906528 1 18.64022722 -6.257930903 24.23136702 0.70703269 0.866183621 0.099209176 0.162345543 356.4384278 2461753.131 0.054420567 0.052330224 5.52E-07 6.257930903 0.159150931 GNVFSS(ph)PTAAGTPNK ddPTM_HeLa_A486_30min_R1 1 GNVFSSPTAAGTPNK 15 0 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 GNVFS(0.057)S(0.928)PT(0.015)AAGTPNK 128.71 2.14E-05 89129000 300260 344060 244710 134720 350100 394550 366260 421260 329960 400280 TRUE FALSE FALSE 279213.3245 316795.4326 339468.2656 313634.9684 306187.1934 345874.4325 274617.8741 325348.294 358561.1985 300047.2826 0.930564417 1.055818369 1.131382569 1.045285149 1.020463144 1.152733094 0.915248662 1.084323415 1.19501565 1 18.19483034 -4.269763727 4.999748406 1.067710789 0.924558769 0.223398599 0.076390217 0.239834455 18.73504513 0.018691176 0.117572213 5.37E-05 4.269763727 -0.143152021 GNVGVVLFNFGK ddPTM_HeLa_A485_30min_R1 2 GNVGVVLFNFGK 12 0 H0YNW5;A0A0C4DGL3;H0YMM5;H0YKC5;H0YMP1;P33316-2;H0YNJ9;P33316;H0YKI0 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 ; ; 234.71 1.04E-28 104690000 176341 205868 167443 173837 195557 221550 243410 244870 141123 229510 FALSE FALSE TRUE 215567.4471 229942.4718 229387.1336 183333.2751 176086.6584 233150.0154 191403.465 184815.2486 169445.0916 172297.3808 1.251135949 1.334567425 1.331344287 1.064051434 1.021992659 1.353183747 1.11089016 1.072652687 0.983445545 1 17.39454125 -4.886651273 0.223641646 0.962602036 1.530305082 0.45138518 0.104731572 9.00395243 0.520082251 0.215911108 1.425201264 1.30E-05 4.886651273 0.567703046 GNVGVVLFNFGK ddPTM_HeLa_A486_30min_R1 2 GNVGVVLFNFGK 12 0 H0YNW5;A0A0C4DGL3;H0YMM5;H0YKC5;H0YMP1;P33316-2;H0YNJ9;P33316;H0YKI0 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 ; ; 244.8 2.97E-29 112623000 205592 244800 178115 80395 224610 227140 256020 228890 227080 292810 FALSE FALSE TRUE 191181.0625 225401.1565 247085.8981 187163.6229 196437.3194 199117.7762 191961.0881 176776.7436 246763.4772 219488.4701 0.871030093 1.026938483 1.125735206 0.852726445 0.894977851 0.907190141 0.874583927 0.805403325 1.124266241 1 17.74378563 -3.953227624 12.10303234 0.946887596 0.591901768 0.049101166 0.10538557 432439.2197 4115126.62 0.026897738 3240612.436 0.000111371 3.953227624 -0.354985829 GNVLQPEESLLDPFGAKPFHS(ph)PDLSWHPPHQGLSDIR ddPTM_HeLa_A485_30min_R1 2 GNVLQPEESLLDPFGAKPFHSPDLSWHPPHQGLSDIR 37 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 0 GNVLQPEES(0.001)LLDPFGAKPFHS(0.751)PDLS(0.195)WHPPHQGLS(0.053)DIR;GNVLQPEESLLDPFGAKPFHS(0.943)PDLS(0.054)WHPPHQGLS(0.003)DIR ; 85.337 6.65E-05 174227000 61034 88467 82792 28454 77946 70474 77017 83250 67894 70259 TRUE FALSE FALSE 74610.80274 98812.44609 113420.2061 30008.36997 70185.42255 74163.90967 60561.68878 62832.80697 81519.70304 52744.72432 1.414564275 1.873409092 2.15036115 0.568935952 1.330662421 1.406091521 1.148203722 1.191262402 1.545551789 1 15.68673918 -5.243739925 24.97071401 1.193680937 1.818841243 0.491309556 0.298983494 709.990542 1001666.205 0.080609916 0.139243604 5.71E-06 5.243739925 0.625160306 GNVLQPEESLLDPFGAKPFHS(ph)PDLSWHPPHQGLSDIR ddPTM_HeLa_A486_30min_R1 1 GNVLQPEESLLDPFGAKPFHSPDLSWHPPHQGLSDIR 37 1 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 0 GNVLQPEESLLDPFGAKPFHS(0.809)PDLS(0.177)WHPPHQGLS(0.014)DIR 91.262 4.44E-05 219210000 71597 74120 62961 11108 84732 58067 68758 69521 74518 41665 TRUE FALSE FALSE 66578.42003 68246.46126 87341.18535 25859.98537 74104.12247 50903.28392 51554.02115 53692.58593 80977.28024 31231.81281 2.131750099 2.185158501 2.796545493 0.82800142 2.372712814 1.629853644 1.650689362 1.719163286 2.592781941 1 14.93072869 -5.226574956 24.99917273 1.739667191 2.352551928 0.256682042 0.529253773 922.5590218 661510.2979 0.136539819 0.236480441 5.94E-06 5.226574956 0.612884736 GNVVPS(ph)PLPTR ddPTM_HeLa_A485_30min_R1 7 GNVVPSPLPTR 11 0 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 GNVVPS(0.996)PLPT(0.004)R;GNVVPS(0.959)PLPT(0.041)R;GNVVPS(0.993)PLPT(0.007)R;GNVVPS(0.997)PLPT(0.003)R;GNVVPS(1)PLPTR;GNVVPS(0.991)PLPT(0.009)R;GNVVPS(0.995)PLPT(0.005)R ;;;;;; 157.43 2.25E-07 35758840000 12342070 10775790 14889380 17189120 14456860 9576590 11338680 7393110 14207740 20757400 TRUE FALSE FALSE 15087520.89 12035924.9 20397581.26 18128118.1 13017484.26 10078005.44 8916078.39 5579938.181 17059103.1 15582962.19 0.968206218 0.772377213 1.308966871 1.163329403 0.835366479 0.64673233 0.57216839 0.358079428 1.094727876 1 23.89346617 -5.970430186 4.504500185 0.687831624 1.049920339 0.281135816 0.234825575 0.237600678 11.45728966 0.076301423 0.084669653 1.07E-06 5.970430186 0.362088715 GNVVPS(ph)PLPTR ddPTM_HeLa_A486_30min_R1 7 GNVVPSPLPTR 11 0 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 GNVVPS(0.994)PLPT(0.006)R;GNVVPS(1)PLPTR;GNVVPS(1)PLPTR;GNVVPS(1)PLPTR;GNVVPS(0.999)PLPT(0.001)R;GNVVPS(1)PLPTR;GNVVPS(1)PLPTR ;;;;;; 184.32 1.55E-10 49598390000 14617310 20597110 17231600 4822400 17129110 19052930 17196400 16239910 18700150 16042710 TRUE FALSE FALSE 13592712.05 18964919.99 23904137 11226790.91 14980617.3 16702373.21 12893678.84 12542437.01 20321094.06 12025511 1.130323032 1.577057307 1.987785551 0.933581194 1.245736444 1.388911724 1.072193842 1.042985784 1.689832063 1 23.51959486 -5.276949921 24.99612957 1.202897972 1.566255557 0.263513161 0.28244242 1078.138766 1737480.014 0.079048503 0.117706569 5.29E-06 5.276949921 0.363357585 GNVVPS(ph)PLPTRR ddPTM_HeLa_A485_30min_R1 6 GNVVPSPLPTRR 12 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 GNVVPS(1)PLPTRR;GNVVPS(0.999)PLPT(0.001)RR;GNVVPS(1)PLPTRR;GNVVPS(0.999)PLPT(0.001)RR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR ;;;;; 103.77 0.00039173 23318580000 2498670 3466930 3751660 2328970 3748750 3100940 3382260 3284330 3125150 3220490 TRUE FALSE FALSE 3054490.521 3872357.305 5139555.154 2456195.734 3375511.287 3263300.423 2659612.52 2478842.918 3752338.939 2417681.112 1.263396776 1.601682408 2.125820121 1.015930398 1.396177217 1.349764619 1.100067543 1.025297714 1.552040474 1 21.20519254 -5.285979969 24.95746416 1.21621421 1.657438203 0.393521055 0.260300258 765.964251 778973.9759 0.073151408 0.108555375 5.18E-06 5.285979969 0.441223993 GNVVPS(ph)PLPTRR ddPTM_HeLa_A486_30min_R1 6 GNVVPSPLPTRR 12 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 GNVVPS(0.999)PLPT(0.001)RR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR;GNVVPS(1)PLPTRR ;;;;; 134.02 1.15E-05 37306740000 7343660 8625830 7950930 2128900 9315810 6893520 7480850 7954040 6833650 7579160 TRUE FALSE FALSE 6828907.357 7942287.816 11029743.03 4956186.789 8147334.243 6043067.591 5609062.206 6143078.727 7425996.284 5681289.004 1.201999643 1.397972856 1.941415587 0.872370123 1.434064389 1.063678962 0.987286899 1.081282562 1.307097083 1 22.43778686 -5.28079485 24.97042227 1.116818882 1.502213811 0.398040283 0.229131118 818.3291466 1055721.614 0.064128478 0.095280123 5.24E-06 5.28079485 0.385394929 GNYDEGFGHRPHK ddPTM_HeLa_A485_30min_R1 1 GNYDEGFGHRPHK 13 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 0 85.288 0.002059 41796000 62328 64000 60483 69321 87578 58786 68703 72220 70809 85811 FALSE FALSE TRUE 76192.64857 71484.24327 82858.17861 73107.8307 78858.42681 61863.94406 54024.0428 54507.93176 85019.7168 64419.89693 1.18275024 1.109660938 1.286220291 1.134864136 1.224131527 0.960323549 0.838623552 0.846135035 1.319774182 1 15.97521873 -6.265586407 24.79867157 0.973707961 1.185757046 0.346280621 0.132329177 350.7797511 2097608.076 0.045698593 0.041755043 5.43E-07 6.265586407 0.212049084 GNYPGPSS(ph)PVVVR ddPTM_HeLa_A486_30min_R1 1 GNYPGPSSPVVVR 13 0 H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4;H3BV44;H3BP49;H3BU05 H3BRD5 MYO9A Unconventional myosin-IXa 1 0 GNYPGPS(0.199)S(0.801)PVVVR 118.08 0.00014333 155050000 139210 147480 144960 50394 169690 142490 163550 172010 137450 143830 TRUE FALSE FALSE 129452.0979 135793.1477 201092.3942 117319.7788 148405.8979 124911.0325 122628.0601 132847.078 149364.2767 107814.0318 1.200698051 1.25951275 1.865178315 1.088167994 1.376498916 1.158578623 1.137403528 1.232187274 1.3853881 1 16.71818543 GPAADPSS(ph)PGTSGVGPAAGAGDSR ddPTM_HeLa_A485_30min_R1 1 GPAADPSSPGTSGVGPAAGAGDSR 24 0 A0A0U1RRM4 A0A0U1RRM4 1 0 GPAADPS(0.011)S(0.986)PGT(0.002)S(0.001)GVGPAAGAGDSR 316.03 3.50E-105 264320000 75601 114980 130160 79961 141680 113060 137780 131520 119970 114720 TRUE FALSE FALSE 92418.18163 128425.9108 178311.6004 84329.06696 127573.8417 118979.6468 108342.1774 99264.51378 144046.8786 86122.41527 1.073102529 1.491201918 2.070443564 0.979176753 1.481308221 1.381517766 1.258002079 1.152597886 1.672582894 1 16.39410116 -5.309221367 24.99999539 1.293707768 1.539549049 0.143953038 0.29909719 816.8010065 427356.3543 0.083147268 0.123327717 4.91E-06 5.309221367 0.245841281 GPAADPSS(ph)PGTSGVGPAAGAGDSR ddPTM_HeLa_A486_30min_R1 1 GPAADPSSPGTSGVGPAAGAGDSR 24 0 A0A0U1RRM4 A0A0U1RRM4 1 0 GPAADPS(0.04)S(0.896)PGT(0.049)S(0.015)GVGPAAGAGDSR 97.256 0.0015765 331930000 104030 119690 117200 35059 136940 102880 117870 122490 91188 108470 TRUE FALSE FALSE 96738.03421 110205.3285 162582.9787 81619.12378 119763.7083 90187.71161 88377.6793 94601.70094 99092.24926 81308.40598 1.189766704 1.355398955 1.99958389 1.003821472 1.472956047 1.10920526 1.086943942 1.163492259 1.218720845 1 16.31111689 -5.949520194 1.374159057 1.124653367 1.458041791 0.239942124 0.247094145 0.618460891 2.42230252 0.101947102 0.120007555 1.12E-06 5.949520194 0.333388424 GPAETEATT(ph)D ddPTM_HeLa_A485_30min_R1 1 GPAETEATTD 10 0 Q12792-4;Q12792;Q12792-3 Q12792-4 TWF1 Twinfilin-1 1 0 GPAETEAT(0.002)T(0.998)D 103.26 0.0057913 137040000 209410 230860 296210 301530 359910 261690 323700 277410 287180 415090 TRUE FALSE FALSE 255992.532 257857.0688 405790.4053 318001.8204 324076.0967 275391.6838 254538.8506 209374.7625 344814.3918 311615.7022 0.821500747 0.827484196 1.302214242 1.02049357 1.039986414 0.883754194 0.816835765 0.671900553 1.106537281 1 18.24940841 -6.308949517 6.65747774 0.86959898 1.010240398 0.083596094 0.164447733 0.494850306 55.61131562 0.059812331 0.053044286 4.91E-07 6.308949517 0.140641418 GPAFNMAS(ph)PESDFGINLK ddPTM_HeLa_A485_30min_R1 3 GPAFNMASPESDFGINLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPAFNMAS(0.999)PES(0.001)DFGINLK;GPAFNMAS(1)PESDFGINLK;GPAFNMAS(0.995)PES(0.005)DFGINLK ;; 348.63 3.38E-115 1947760000 2235640 1969140 1861430 2496870 2755030 1944420 2492960 2219960 2222650 3578910 TRUE FALSE FALSE 2732950.405 2199413.794 2550050.418 2633267.686 2480729.54 2046226.825 1960318.73 1675511.329 2668715.468 2686753.602 1.017194284 0.818613881 0.949119568 0.980092735 0.923318587 0.761598244 0.729623561 0.623619273 0.993286271 1 21.35743259 -6.229866301 8.670888321 0.792365279 0.934238113 0.173688556 0.118122784 0.493466577 128.0790298 0.038008504 0.037650305 5.89E-07 6.229866301 0.141872834 GPAFNMAS(ph)PESDFGINLK ddPTM_HeLa_A486_30min_R1 3 GPAFNMASPESDFGINLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPAFNMAS(1)PESDFGINLK;GPAFNMAS(1)PESDFGINLK;GPAFNMAS(0.787)PES(0.213)DFGINLK ;; 385.27 2.85E-145 1760704000 2123990 2449540 1795280 910239 2437460 2412090 2681650 2789020 1928300 2422000 TRUE FALSE FALSE 1975109.269 2255429.529 2490460.495 2119082.393 2131731.038 2114510.86 2010672.806 2154021.03 2095446.597 1815515.435 1.087905523 1.242308099 1.37176498 1.167207038 1.17417401 1.164689002 1.107494195 1.18645151 1.154188257 1 20.79194777 -5.502573084 24.33416011 1.143682099 1.240601332 0.233835582 0.081109546 819.6566146 982269.9241 0.022759075 0.033266812 3.14E-06 5.502573084 0.096919233 GPAFNMAS(ph)PESDFGINLKGPK ddPTM_HeLa_A485_30min_R1 3 GPAFNMASPESDFGINLKGPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPAFNMAS(0.999)PES(0.001)DFGINLKGPK;GPAFNMAS(0.983)PES(0.017)DFGINLKGPK;GPAFNMAS(0.968)PES(0.032)DFGINLKGPK ;; 211.49 2.47E-27 1828020000 726623 1070310 619403 515912 1090330 1288250 1712340 2600150 719888 793200 TRUE FALSE FALSE 888257.7795 1195473.444 848545.9452 544094.9662 981772.9168 1355700.778 1346484.57 1962459.136 864362.9184 595469.8378 1.491692313 2.007613767 1.425002395 0.913723805 1.648736602 2.276690929 2.261213726 3.295648262 1.451564569 1 19.18366891 -6.176102617 4.595773363 2.213008992 1.475430751 0.150439808 0.619696553 0.33403622 12.51101752 0.205115508 0.204197085 6.67E-07 6.176102617 -0.737578241 GPAFNMAS(ph)PESDFGINLKGPK ddPTM_HeLa_A486_30min_R1 2 GPAFNMASPESDFGINLKGPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPAFNMAS(0.994)PES(0.006)DFGINLKGPK;GPAFNMAS(1)PESDFGINLKGPK ; 234.55 1.66E-46 861920000 768166.4 606053 429615 319620 883597 578156.4 904469 882236 417110 987769 TRUE FALSE FALSE 714321.9022 558027.1531 595973.4335 744091.5127 772768.025 506829.3416 678161.2897 681370.1219 453265.4306 740425.2131 0.964745513 0.753657686 0.804906995 1.004951614 1.043681403 0.684511187 0.915907883 0.920241653 0.612169092 1 19.4979945 GPAGEAGAS(ph)PPVR ddPTM_HeLa_A485_30min_R1 2 GPAGEAGASPPVR 13 0 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GPAGEAGAS(1)PPVR;GPAGEAGAS(1)PPVR ; 164.92 7.38E-12 1617640000 807930 962800 1114940 942760 1165670 854400 949380 884740 1099700 1372800 TRUE FALSE FALSE 987651.2412 1075391.085 1527402.703 994260.5916 1049611.802 899135.0628 746537.2073 667756.1278 1320399.703 1030586.225 0.958339261 1.04347512 1.482071724 0.964752456 1.018460927 0.872450108 0.724381124 0.647938146 1.281212257 1 19.97503378 -5.782461473 2.15997733 0.87912188 1.148361371 0.180139888 0.209014488 0.462670646 4.435273157 0.071738084 0.090954267 1.65E-06 5.782461473 0.269239491 GPAGEAGAS(ph)PPVR ddPTM_HeLa_A486_30min_R1 3 GPAGEAGASPPVR 13 0 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GPAGEAGAS(1)PPVR;GPAGEAGAS(1)PPVR;GPAGEAGAS(1)PPVR ;; 148.41 7.27E-08 2519940000 1911250 2407000 2360450 604780 2688270 2229890 2132360 2249950 2207530 2066840 TRUE FALSE FALSE 1777281.245 2216260.554 3274479.455 1407958.404 2351082.109 1954788.844 1598820.974 1737685.501 2398880.478 1549289.811 1.147158674 1.430500955 2.113535784 0.90877665 1.517522476 1.261732201 1.031970237 1.121601322 1.548374268 1 20.56317561 -5.296681952 24.99944878 1.212614962 1.550409715 0.240005038 0.296758353 903.480016 640884.8337 0.083247887 0.12348131 5.05E-06 5.296681952 0.337794753 GPAGEAGAS(ph)PPVRR ddPTM_HeLa_A485_30min_R1 4 GPAGEAGASPPVRR 14 1 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR ;;; 180.1 1.55E-17 12919850000 1106888 1457870 1579640 1188020 1684260 1355220 1472470 1393610 1433590 1737780 TRUE FALSE FALSE 1353111.417 1628355.215 2164014.57 1252918.524 1516569.161 1426177.224 1157864.756 1051824.962 1721298.363 1304583.427 1.037198073 1.248180209 1.658778216 0.960397394 1.162493045 1.093205075 0.887535999 0.806253506 1.319423754 1 20.31515778 GPAGEAGAS(ph)PPVRR ddPTM_HeLa_A486_30min_R1 6 GPAGEAGASPPVRR 14 1 Q13425;Q13425-2;A0A140TA73 Q13425 SNTB2 Beta-2-syntrophin 1 0 GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR;GPAGEAGAS(1)PPVRR ;;;;; 130.64 1.14E-05 16781880000 1506160 1928470 1822180 609656 2217850 1684230 1816600 1897970 1664390 1786980 TRUE FALSE FALSE 1400585.962 1775651.014 2527776.896 1419309.978 1939666.572 1476446.827 1362067.466 1465843.663 1808660.665 1339508.577 1.04559686 1.325598839 1.887092729 1.059575133 1.448043414 1.102230215 1.016841168 1.094314504 1.350241945 1 20.35327239 -6.27224143 23.8121835 1.112627417 1.364999309 0.205808844 0.235604796 629.4324189 1387523.706 0.083316238 0.074278271 5.34E-07 6.27224143 0.252371892 GPAPAGS(ph)PSQHQFHPGR ddPTM_HeLa_A485_30min_R1 1 GPAPAGSPSQHQFHPGR 17 0 A0A0X1KG68;Q5XG87 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 GPAPAGS(0.967)PS(0.033)QHQFHPGR 101.17 0.00027811 143050000 56830 89641 96189 34953 95325 81779 79377 88186 82916 65064 TRUE FALSE FALSE 69471.63744 100123.7352 131773.3139 36862.39388 85834.10829 86060.82199 62417.4555 66558.24523 99556.48065 48844.74221 1.422295099 2.049836495 2.697799351 0.754684992 1.757284498 1.761926015 1.277874602 1.362649125 2.038223075 1 15.57591565 -5.257785002 24.99817763 1.459069225 2.05596287 0.286979918 0.455920027 436.8205471 2988108.221 0.123669904 0.204003188 5.52E-06 5.257785002 0.596893645 GPAPAGS(ph)PSQHQFHPGR ddPTM_HeLa_A486_30min_R1 2 GPAPAGSPSQHQFHPGR 17 0 A0A0X1KG68;Q5XG87 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 GPAPAGS(0.56)PS(0.44)QHQFHPGR;GPAPAGS(0.926)PS(0.074)QHQFHPGR ; 71.434 0.0019131 104050000 187511 209840 264960 30129 271470 151081 159289 169811 185894 128151 TRUE FALSE FALSE 174367.4472 193211.5142 367559.6079 70141.83464 237419.7012 132442.1623 119433.2074 131148.7422 202007.4416 96061.15548 1.815171245 2.011338644 3.826308418 0.73017896 2.471547423 1.378727558 1.243303881 1.36526301 2.102904557 1 16.55166554 -5.283179831 24.99178865 1.513942488 2.496979818 0.33971536 0.687296603 943.3475977 1084425.325 0.189839197 0.281850321 5.21E-06 5.283179831 0.98303733 GPAPAGS(ph)PSQHQFHPGRR ddPTM_HeLa_A485_30min_R1 2 GPAPAGSPSQHQFHPGRR 18 1 A0A0X1KG68;Q5XG87 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 GPAPAGS(0.995)PS(0.005)QHQFHPGRR;GPAPAGS(0.986)PS(0.014)QHQFHPGRR ; 98.684 0.00032867 167109000 51893 116475 102505 32912 117601 101450 113473 160594 79399 58979 TRUE FALSE FALSE 63436.41882 130095.7381 140425.8651 34709.89922 105892.2315 106761.7651 89228.56656 121208.0697 95333.65101 44276.62073 1.432729458 2.938249033 3.171557874 0.783932889 2.391605994 2.411244656 2.015252408 2.73751853 2.153137467 1 15.4342575 -8.047845301 21.78116728 0.999999986 2.257774053 0.232165408 0.669431786 3636.325388 1655405.827 0.639263824 0.165057211 8.96E-09 8.047845301 1.257774067 GPAPAGS(ph)PSQHQFHPGRR ddPTM_HeLa_A486_30min_R1 1 GPAPAGSPSQHQFHPGRR 18 1 A0A0X1KG68;Q5XG87 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 GPAPAGS(0.981)PS(0.019)QHQFHPGRR 71.853 0.0050319 41033000 35517 35136 34597 5473.7 49815 25102 30824 34137 28450 26538 TRUE FALSE FALSE 33027.44171 32351.6954 47993.88494 12743.05023 43566.73819 22005.17046 23111.50918 26364.75031 30916.06891 19892.71207 1.660278478 1.626308936 2.412636587 0.640588884 2.190085396 1.106192579 1.161807857 1.325347203 1.554140471 1 14.27995236 -5.696635668 0.888651245 1.268328553 1.80683696 0.162914546 0.46936917 1.194554173 2.013478618 0.224080226 0.396634657 2.01E-06 5.696635668 0.538508407 GPAPAPQQCS(ph)EPETK ddPTM_HeLa_A486_30min_R1 1 GPAPAPQQCSEPETK 15 0 Q3YEC7;Q3YEC7-2;G3V154 Q3YEC7 RABL6 Rab-like protein 6 1 0 GPAPAPQQCS(0.998)EPET(0.002)K 194.53 3.79E-16 0 106680 122730 89854 56115 150150 154200 174610 164130 106700 155050 TRUE FALSE FALSE 99202.2829 113004.4278 124647.8752 130638.5559 131316.7869 135176.3718 130920.7312 126761.1819 115948.8419 116224.4708 0.853540414 0.972294621 1.072475309 1.124019365 1.129854892 1.163062915 1.126447213 1.090658284 0.997628478 1 16.82655433 -4.504325005 1.884124162 1.100573461 0.833000595 0.672164783 0.051983677 0.285666574 1.520599498 0.014738622 0.113497159 3.13E-05 4.504325005 -0.267572866 GPAS(ph)DS(ph)ETEDASR ddPTM_HeLa_A485_30min_R1 2 GPASDSETEDASR 13 0 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 2 0 GPAS(1)DS(0.988)ET(0.012)EDASR;GPAS(1)DS(0.5)ET(0.5)EDASR ; 247.11 5.61E-35 943070000 1196970 1235890 1310290 1510800 1497670 1134250 1347180 1033760 1298180 1946330 TRUE FALSE FALSE 1463231.847 1380416.585 1795020.797 1593331.178 1348556.716 1193637.576 1059343.988 780228.7391 1558712.818 1461145.751 1.001427713 0.944749409 1.228502219 1.090466969 0.922944693 0.816918898 0.725009115 0.533984196 1.066774357 1 20.47866866 -6.020796587 2.74178616 0.792945696 1.068316507 0.333868178 0.153858588 0.283983371 4.292875643 0.053319476 0.057247492 9.53E-07 6.020796587 0.275370811 GPAS(ph)DS(ph)ETEDASR ddPTM_HeLa_A486_30min_R1 2 GPASDSETEDASR 13 0 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 2 0 GPAS(1)DS(0.819)ET(0.182)EDASR;GPAS(0.995)DS(0.778)ET(0.227)EDASR ; 193.62 1.93E-17 1319950000 949640 1134550 824440 320770 989700 1041550 1011540 946150 980610 966920 TRUE FALSE FALSE 883075.1399 1044644.126 1143685.247 746768.7708 865562.5974 913054.1507 758441.993 730732.2993 1065610.064 724796.9384 1.218375925 1.441292134 1.57793885 1.030314466 1.194213926 1.259737869 1.046419973 1.008188998 1.470218771 1 19.46721734 -5.26739641 24.99725677 1.147326782 1.415411287 0.376867041 0.158095056 492.1724967 2065284.44 0.043547249 0.066573993 5.40E-06 5.26739641 0.268084505 GPAS(ph)PTRPAAPRPAEAPLLDL ddPTM_HeLa_A485_30min_R1 1 GPASPTRPAAPRPAEAPLLDL 21 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 GPAS(0.94)PT(0.06)RPAAPRPAEAPLLDL 84.674 0.0012584 176050000 83754 152160 175470 79400 177210 126840 150430 144710 152860 143750 TRUE FALSE FALSE 102384.7884 169953.7884 240383.6549 83737.42095 159566.3502 133481.1463 118289.4016 109219.6456 183537.5999 107915.7705 0.94874723 1.574874437 2.227511825 0.775951657 1.478619384 1.236901202 1.096127109 1.01208234 1.700748639 1 16.71954619 -5.284462 24.97864552 1.196875931 1.582827801 0.190124042 0.375878277 1296.666543 1406829.653 0.104883787 0.155686115 5.19E-06 5.284462 0.38595187 GPAS(ph)PTRPAAPRPAEAPLLDL ddPTM_HeLa_A486_30min_R1 3 GPASPTRPAAPRPAEAPLLDL 21 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 GPAS(0.714)PT(0.286)RPAAPRPAEAPLLDL;GPAS(0.5)PT(0.5)RPAAPRPAEAPLLDL;GPAS(0.794)PT(0.206)RPAAPRPAEAPLLDL ;; 160.43 1.46E-13 552010000 383511 501910 486890 140231 639630 415370 446800 489670 446610 480880 TRUE FALSE FALSE 356628.8594 462136.8237 675426.8474 326464.8549 559401.6411 364125.8726 335005.9142 378182.8304 485322.5144 360464.518 0.989359123 1.282059123 1.873767912 0.905678197 1.551890999 1.010157323 0.929372788 1.04915411 1.346380823 1 18.45949773 -6.289451751 24.54536974 1.061482593 1.326098448 0.176533289 0.273531824 1036.485661 908199.3257 0.095477877 0.084222846 5.14E-07 6.289451751 0.264615855 GPASDS(ph)ETEDASR ddPTM_HeLa_A486_30min_R1 1 GPASDSETEDASR 13 0 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 1 0 GPAS(0.126)DS(0.874)ETEDASR 289.31 1.65E-50 102200000 96025 118500 84696 18708 101940 109650 97929 104710 104370 99300 TRUE FALSE FALSE 89294.14337 109109.6284 117492.5594 43553.16945 89153.73465 96122.49784 73426.12841 80869.8188 113416.8756 74434.63367 1.199631663 1.465844904 1.578466282 0.585119686 1.197745327 1.291367917 0.986451129 1.086454179 1.523711074 1 16.18368643 GPASPT(ph)RPAAPRPAEAPLLDL ddPTM_HeLa_A485_30min_R1 1 GPASPTRPAAPRPAEAPLLDL 21 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 GPAS(0.402)PT(0.598)RPAAPRPAEAPLLDL 133.15 4.23E-06 173610000 79690 130050 162410 93118 147320 115890 144520 164240 135040 125710 TRUE FALSE FALSE 97416.76557 145258.2162 222492.2174 98204.80055 132652.3035 121957.8212 113642.1214 123959.8825 162141.2893 94372.81052 1.032254577 1.539195616 2.357588125 1.04060481 1.405619932 1.292298285 1.204182865 1.313512672 1.718093256 1 16.52608365 GPASQFYITPSTSLS(ph)PR ddPTM_HeLa_A485_30min_R1 3 GPASQFYITPSTSLSPR 17 0 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GPASQFYITPSTS(0.002)LS(0.997)PR;GPASQFYITPSTS(0.001)LS(0.999)PR;GPASQFYITPSTSLS(1)PR ;; 184.97 1.09E-17 1551410000 608910 750620 803100 468350 874500 716240 791120 876720 695900 682180 TRUE FALSE FALSE 744359.9288 838398.4795 1100200.11 493934.7746 787431.7094 753741.2189 622090.7491 661703.0454 835560.7468 512125.0806 1.453472905 1.637097091 2.148303513 0.964480736 1.53757693 1.471791262 1.21472424 1.29207311 1.631555998 1 18.96613669 -7.561557412 0.05537449 8.48E-09 2.690059863 0.225784105 0.289171035 48.30289189 2.639977239 63.62461317 61.56593253 2.74E-08 7.561557412 2.690059855 GPASQFYITPSTSLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 GPASQFYITPSTSLSPR 17 0 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GPASQFYITPS(0.005)T(0.005)S(0.204)LS(0.785)PR;GPASQFYIT(0.002)PS(0.028)T(0.136)S(0.161)LS(0.673)PR;GPASQFYITPSTS(0.003)LS(0.997)PR;GPASQFYITPSTS(0.001)LS(0.999)PR ;;; 161.14 8.37E-12 1499190000 1074216 1063053 1008585 321224 1189322 963948 1129267 1138766 904525 1188379 TRUE FALSE FALSE 998919.0057 978812.8087 1399136.123 747825.7058 1040146.145 845025.8965 846712.4524 879493.8409 982929.9553 890801.1634 1.121371465 1.098800551 1.570649187 0.8394979 1.167652432 0.948613373 0.950506676 0.98730657 1.103422397 1 19.76474392 -5.288803287 24.99999285 1.001878226 1.247126613 0.406694791 0.145716737 731.4767077 668284.2585 0.040100103 0.059495023 5.14E-06 5.288803287 0.245248387 GPAST(ph)PTYSPAPTQPAPR ddPTM_HeLa_A486_30min_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 GPAS(0.058)T(0.83)PT(0.068)Y(0.031)S(0.013)PAPTQPAPR 70.41 0.031921 117730000 77314 76418 85089 24156 111100 68793 87135 85401 89472 91366 TRUE FALSE FALSE 71894.68785 70362.35937 118037.7396 56236.38878 97164.80203 60306.0191 65332.90138 65957.05659 97227.505 68487.35891 1.04975121 1.027377322 1.723496736 0.82112071 1.418726077 0.880542337 0.953941025 0.963054462 1.419641618 1 16.06355011 -6.273961633 24.95961941 1.03553338 1.205189507 0.087602444 0.265002238 2007.86016 4002097.758 0.090887051 0.080694281 5.32E-07 6.273961633 0.169656127 GPASTPT(ph)YSPAPTQPAPR ddPTM_HeLa_A486_30min_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 GPAST(0.014)PT(0.754)YS(0.232)PAPTQPAPR 221.31 1.00E-33 125570000 81427 93325 104150 25050 116180 84820 92992 95290 81258 98480 TRUE FALSE FALSE 75719.38779 85929.58712 144479.6692 58317.66596 101607.6211 74355.77079 69724.41803 73594.54717 88301.50887 73819.967 1.025730448 1.164042611 1.957189567 0.789998537 1.376424634 1.00725825 0.944519767 0.996946357 1.196173779 1 16.17172347 GPASTPTYS(ph)PAPTQPAPR ddPTM_HeLa_A485_30min_R1 2 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 GPASTPTYS(1)PAPTQPAPR;GPASTPTYS(1)PAPTQPAPR ; 237.46 3.15E-45 212089000 133773 169205 163577 133270 199087 167999 185736 203966 163010 197178 TRUE FALSE FALSE 163530.3423 188992.0529 224090.9393 140550.2026 179265.1992 176795.1679 146051.9863 153943.0187 195724.6118 148025.1534 1.104746988 1.276756339 1.513870678 0.949502158 1.211045523 1.194358957 0.986670055 1.039978782 1.322238872 1 17.17548282 -5.27303083 24.94290436 1.105976524 1.29628785 0.286469509 0.142946513 940.6715512 2024169.802 0.040175211 0.060163298 5.33E-06 5.27303083 0.190311326 GPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A485_30min_R1 2 GPAVGIDLGTTYSCVGVFQHGK 22 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 343.47 3.08E-127 403140000 526840 536360 547770 595990 677320 566460 687110 662870 596510 851160 FALSE FALSE TRUE 644033.7404 599082.6363 750412.9176 628547.4246 609883.6426 596118.9697 540303.3353 500300.0932 716224.0855 638981.4764 1.007906746 0.93755869 1.174389157 0.983670807 0.954462164 0.93292058 0.845569637 0.78296494 1.120883957 1 19.28541458 -5.747490788 2.777402493 0.920329302 1.034573849 0.148830343 0.101079613 0.439601626 6.951940192 0.032588019 0.04125345 1.79E-06 5.747490788 0.114244547 GPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_A486_30min_R1 2 GPAVGIDLGTTYSCVGVFQHGK 22 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 313.12 1.63E-92 370690000 562980 606540 570320 199772 711490 631120 696070 666980 628190 686790 FALSE FALSE TRUE 523518.0092 558475.5614 791163.1777 465079.3119 622248.2898 553258.8312 521905.9237 515123.2141 682642.015 514813.3137 1.016908451 1.084811808 1.536796265 0.903394103 1.208687253 1.074678561 1.013777052 1.000601966 1.325999147 1 18.97368984 GPDEAMEDGEEGS(ph)DDEAEWVVTK ddPTM_HeLa_A485_30min_R1 2 GPDEAMEDGEEGSDDEAEWVVTK 23 0 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK ; 265.64 1.23E-61 301160000 153130 144753 136121 191700 171435 148307 177495 164500 150854 251780 TRUE FALSE FALSE 187193.2402 161680.6042 186477.8224 202172.0856 154366.3295 156072.1252 139571.7432 124156.1171 181129.0141 189015.8797 0.990357215 0.855381063 0.986572254 1.069603707 0.816684449 0.825709065 0.738412791 0.656855484 0.958274058 1 17.52814792 -5.836567873 10.10885333 0.810078991 0.967575355 0.291832818 0.105260883 0.440729671 56.07808749 0.032406429 0.036777917 1.46E-06 5.836567873 0.157496364 GPDEAMEDGEEGS(ph)DDEAEWVVTK ddPTM_HeLa_A486_30min_R1 4 GPDEAMEDGEEGSDDEAEWVVTK 23 0 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK ;;; 246 3.84E-49 1140589000 623997 721880 518450.9 239676.7 690960.8 699010.2 721674 718171 639889.3 750347 TRUE FALSE FALSE 580258.0326 664675.5998 719208.9731 557979.4702 604294.0535 612773.4285 541103.5321 554659.1409 695355.4197 562455.2273 1.031651951 1.181739572 1.278695509 0.992042465 1.074386056 1.089461701 0.962038409 0.986139188 1.236285816 1 19.10137873 -5.279940149 24.96802855 1.047211929 1.165800087 0.246284767 0.09247953 1088.599771 1469135.906 0.026032752 0.038690915 5.25E-06 5.279940149 0.118588158 GPDGPWGVGT(ph)PR ddPTM_HeLa_A485_30min_R1 2 GPDGPWGVGTPR 12 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 GPDGPWGVGT(1)PR;GPDGPWGVGT(1)PR ; 115.34 0.0013206 242330000 187847 236500 295180 185581 265930 255840 262330 238540 273880 272180 TRUE FALSE FALSE 229632.9171 264156.6177 404379.3655 195718.8201 239453.0755 269235.3868 206281.0525 180037.691 328845.2038 204330.5351 1.123830645 1.292790711 1.979045204 0.957853999 1.171890806 1.317646365 1.009545893 0.881110065 1.609378665 1 17.64054529 GPDGPWGVGT(ph)PR ddPTM_HeLa_A486_30min_R1 2 GPDGPWGVGTPR 12 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 GPDGPWGVGT(1)PR;GPDGPWGVGT(1)PR ; 114.21 0.0014831 400070000 337540 496820 477730 105812 574670 384370 419670 405680 450760 369130 TRUE FALSE FALSE 313880.1891 457450.1738 662719.8501 246335.6834 502589.53 336950.3374 314664.1272 313315.5199 489832.2397 276697.4454 1.13438051 1.653250442 2.3951065 0.890270899 1.816386593 1.217757312 1.137213706 1.132339764 1.770281034 1 18.0779498 -5.942157514 1.319069705 1.264044549 1.63960708 0.101893649 0.42666726 0.980337998 3.554843671 0.178533761 0.212894635 1.14E-06 5.942157514 0.375562531 GPDPGEDLADLEVVVPGS(ph)PGDCLPEEADGTDTHLGLPAGASQPALTSSR ddPTM_HeLa_A485_30min_R1 1 GPDPGEDLADLEVVVPGSPGDCLPEEADGTDTHLGLPAGASQPALTSSR 49 0 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 GPDPGEDLADLEVVVPGS(0.633)PGDCLPEEADGT(0.148)DT(0.148)HLGLPAGAS(0.041)QPALT(0.01)S(0.01)S(0.01)R 72.238 0.00019338 60289000 6051.8 6768.4 10128 6882.7 11703 6941.1 9433.5 7717 8031.3 9626.4 TRUE FALSE FALSE 7398.002032 7559.905503 13874.76866 7258.684473 10537.80823 7304.525263 7417.95566 5824.39365 9643.108243 7226.715641 1.023701831 1.046105296 1.919927302 1.004423701 1.458173914 1.010766941 1.026462923 0.805953069 1.334369404 1 12.81912441 -6.28456382 23.2105383 1.022816972 1.295969575 0.17122016 0.279636978 565.5025646 567604.7684 0.097400502 0.085975805 5.19E-07 6.28456382 0.273152602 GPDPGEDLADLEVVVPGS(ph)PGDCLPEEADGTDTHLGLPAGASQPALTSSR ddPTM_HeLa_A486_30min_R1 1 GPDPGEDLADLEVVVPGSPGDCLPEEADGTDTHLGLPAGASQPALTSSR 49 0 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 GPDPGEDLADLEVVVPGS(0.583)PGDCLPEEADGT(0.103)DT(0.103)HLGLPAGAS(0.137)QPALT(0.025)S(0.025)S(0.025)R 58.546 0.0025182 66970000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GPEDSWLLLSAPGPTPASPRPAS(ph)PCGK ddPTM_HeLa_A485_30min_R1 1 GPEDSWLLLSAPGPTPASPRPASPCGK 27 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 GPEDSWLLLSAPGPTPAS(0.019)PRPAS(0.981)PCGK 147.49 2.39E-09 170000000 74932 73518 84038 118360 113220 105760 125580 95099 92581 175480 TRUE FALSE FALSE 91600.36489 82115.29058 115127.1533 124825.7071 101947.4193 111297.4301 98748.80711 71775.82114 111161.1575 131736.0655 0.695332478 0.623331889 0.873922816 0.947543914 0.773876303 0.844851633 0.749595843 0.544845642 0.843817197 1 17.00729084 -4.754054506 24.99677873 0.807002623 0.659332146 0.224934729 0.118311987 280.0375325 947865.6173 0.031538156 0.079939625 1.76E-05 4.754054506 -0.147670477 GPEDSWLLLSAPGPTPASPRPAS(ph)PCGK ddPTM_HeLa_A486_30min_R1 2 GPEDSWLLLSAPGPTPASPRPASPCGK 27 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 GPEDSWLLLSAPGPT(0.134)PAS(0.346)PRPAS(0.52)PCGK;GPEDSWLLLS(0.004)APGPT(0.152)PAS(0.115)PRPAS(0.728)PCGK ; 214.46 9.15E-30 780040000 365379 532352 375807 196776 553837 524230 576186 560826 486348 629900 TRUE FALSE FALSE 339767.8189 490166.4887 521329.5349 458104.4725 484369.5991 459555.8326 432018.1685 433138.1625 528505.0362 472168.94 0.719589516 1.038116757 1.104116537 0.970213061 1.025839605 0.973286876 0.914965242 0.917337262 1.119313431 1 18.84894362 -4.257094766 24.91638176 1.002978905 0.719589398 0.635490719 0.065241715 289.6227359 1660925 0.016853804 0.12886839 5.53E-05 4.257094766 -0.283389508 GPEEEEIGSPEPMAAPASAS(ph)QKLSPLQK ddPTM_HeLa_A485_30min_R1 1 GPEEEEIGSPEPMAAPASASQKLSPLQK 28 1 H3BRB3;Q14807-2;Q14807 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 GPEEEEIGSPEPMAAPAS(0.098)AS(0.621)QKLS(0.281)PLQK 131.78 2.11E-06 126040000 49536 38810 28755 64401 71093 64888 86565 88066 51615 104490 TRUE FALSE FALSE 60555.1123 43348.4919 39392.6711 67919.06356 64014.7313 68285.43534 68069.68058 66467.67542 61973.65706 78442.566 0.771967509 0.552614405 0.502184886 0.86584449 0.816071357 0.870515064 0.867764583 0.847341932 0.790051374 1 16.25934911 -5.274873021 24.69051278 0.857269154 0.603291484 0.668249709 0.082636312 364.7562866 670407.2326 0.022700304 0.033891208 5.31E-06 5.274873021 -0.253977671 GPEENYSRPEAPNEFYDGDHDNDKES(ph)DVEI ddPTM_HeLa_A486_30min_R1 1 GPEENYSRPEAPNEFYDGDHDNDKESDVEI 30 2 O15379;O15379-2 O15379 HDAC3 Histone deacetylase 3 1 0 GPEENYSRPEAPNEFYDGDHDNDKES(1)DVEI 155.01 3.35E-10 494170000 59667 59947 33696 23001 43282 61985 64557 57270 45042 94861 TRUE FALSE FALSE 55484.65142 55196.5814 46743.99361 53547.49041 37853.16797 54337.92092 48404.15579 44230.8712 48946.27683 71107.18816 0.780295957 0.776244749 0.657373675 0.753053127 0.532339542 0.764169169 0.680720994 0.622030941 0.688344991 1 16.11770779 -10.92429968 7.196005562 1.087682293 0.692636813 0.601182807 0.074515583 0.043124363 0.000453658 0.029682692 0.017400203 1.19E-11 10.92429968 -0.395045481 GPGAGSALDDGRRDPSSNDINGGMEPTPS(ph)TVSTPSPSADLLGLR ddPTM_HeLa_A485_30min_R1 1 GPGAGSALDDGRRDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 44 2 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 0 GPGAGSALDDGRRDPSSNDINGGMEPT(0.041)PS(0.206)T(0.206)VS(0.173)T(0.189)PS(0.173)PS(0.01)ADLLGLR 53.003 0.005161 97435000 15663 17328 19390 15517 27598 23473 27428 29105 24471 26691 TRUE FALSE FALSE 19147.18031 19354.35887 26563.16789 16364.65442 24850.24622 24702.00998 21567.78373 21966.95312 29382.10524 20037.42491 0.955570908 0.965910488 1.325677726 0.816704466 1.240191608 1.23279364 1.076375025 1.096296216 1.46636134 1 14.29040949 -2.625643279 0.446358128 1.179727422 8.40E-15 0.135671112 0.173684315 39.98803127 1.947390605 0.109340622 34.05984845 0.002367864 2.625643279 -1.179727422 GPGDLMGPQGLS(ph)PEEMAR ddPTM_HeLa_A486_30min_R1 1 GPGDLMGPQGLSPEEMAR 18 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 GPGDLMGPQGLS(1)PEEMAR 132.79 6.62E-06 92385000 10949 12178 16904 3626.4 12322 7634.1 10615 14003 9802.9 10103 TRUE FALSE FALSE 10181.53164 11212.97093 23449.6815 8442.442468 10776.45986 6692.28236 7959.014726 10814.82258 10652.62326 7573.143041 1.344426163 1.480623153 3.096426593 1.11478714 1.4229838 0.883686248 1.050952647 1.428049427 1.406631726 1 12.88667646 GPGEPDS(ph)PTPLHPPTPPILSTDR ddPTM_HeLa_A486_30min_R1 1 GPGEPDSPTPLHPPTPPILSTDR 23 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 GPGEPDS(0.969)PT(0.031)PLHPPTPPILSTDR 69.619 0.00038645 0 35096 43710 42147 22398 55413 45583 54551 53695 32604 52075 TRUE FALSE FALSE 32635.95164 40246.26041 58467.44714 52143.67593 48462.58483 39959.43291 40901.76282 41469.82065 35430.14097 39035.08105 0.836067218 1.031027971 1.497818003 1.335815747 1.241513621 1.023680029 1.04782062 1.062373115 0.90764871 1 15.25248364 -6.271308461 21.41673927 1.014672457 1.205077188 0.217781813 0.169027666 169.7219165 368306.619 0.06476981 0.058032785 5.35E-07 6.271308461 0.19040473 GPGGSQGSQGPS(ph)PQGAR ddPTM_HeLa_A485_30min_R1 4 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 0 GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR ;;; 287.09 3.64E-60 2193500000 895249 1361930 1405040 966270 1478440 1209880 1318960 1383380 1182400 1248860 TRUE FALSE FALSE 1094394.051 1521195.866 1924822.765 1019054.883 1331241.322 1273227.446 1037153.421 1044103.886 1419696.834 937542.1856 1.167301129 1.622535913 2.053051899 1.086942965 1.41992685 1.358048166 1.106247204 1.113660699 1.514275151 1 19.83852408 -5.295925365 24.99983431 1.241466077 1.615120722 0.331164753 0.250808171 708.8288651 513847.9393 0.070786153 0.104998212 5.06E-06 5.295925365 0.373654645 GPGGSQGSQGPS(ph)PQGAR ddPTM_HeLa_A486_30min_R1 6 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 0 GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR ;;;;; 324.45 6.47E-80 1847173000 955638 1098519 1071269 335357 1239673 952872 1041667 1073598 930034 1008068 TRUE FALSE FALSE 888652.7111 1011468.354 1486093.046 780728.044 1084181.653 835316.3407 781030.899 829163.1719 1010650.096 755641.2114 1.176024676 1.338556366 1.966664899 1.033199397 1.434783647 1.105440424 1.033600189 1.097297447 1.3374735 1 19.52734186 -5.904269976 1.508699244 1.120791349 1.444711534 0.229634578 0.243428749 0.582936589 2.74352745 0.095440876 0.11532665 1.25E-06 5.904269976 0.323920185 GPGGSQGSQGPS(ph)PQGARR ddPTM_HeLa_A485_30min_R1 4 GPGGSQGSQGPSPQGARR 18 1 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 0 GPGGSQGSQGPS(1)PQGARR;GPGGSQGS(0.001)QGPS(0.999)PQGARR;GPGGSQGSQGPS(1)PQGARR;GPGGSQGSQGPS(1)PQGARR ;;; 186.13 4.04E-18 367466000 62313 152170 129214 37434.7 139623 139907 155452 258105 100189 55834 TRUE FALSE FALSE 76174.31187 169964.9578 177015.6356 39479.66287 125721.6439 147232.3142 122238.4103 194804.3441 120296.0133 41915.61135 1.81732556 4.054932096 4.223143358 0.941884458 2.999399026 3.512588972 2.916297922 4.647536748 2.869957265 1 15.35520005 -6.004725149 24.97860713 3.217498161 2.83320127 0 1.236711011 1168.651162 6177902.359 0.387402101 0.427979301 9.89E-07 6.004725149 -0.384296891 GPGGSQGSQGPS(ph)PQGARR ddPTM_HeLa_A486_30min_R1 2 GPGGSQGSQGPSPQGARR 18 1 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 0 GPGGS(0.001)QGS(0.01)QGPS(0.989)PQGARR;GPGGSQGSQGPS(1)PQGARR ; 71.527 0.0036317 78972000 23518 20495.6 25508 9213.1 38604 14917.2 21224.1 28607 15111.5 23236 TRUE FALSE FALSE 21869.50965 18871.45401 35385.38073 21448.5624 33761.92635 13076.86753 15913.60569 22093.81059 16421.37699 17417.55436 1.25560163 1.083473238 2.031592955 1.231433642 1.938385014 0.750786664 0.913653281 1.268479497 0.942806128 1 14.08825445 -6.276063959 24.99723791 0.988081846 1.498219982 0.4343702 0.303800769 832.8438642 1423544.126 0.106131326 0.093991881 5.30E-07 6.276063959 0.510138136 GPGLFFILPCTDSFIK ddPTM_HeLa_A486_30min_R1 1 GPGLFFILPCTDSFIK 16 0 F8VSL7;P27105 F8VSL7 STOM Erythrocyte band 7 integral membrane protein 0 0 95.81 0.0040465 0 1292.8 1742.2 725.87 491.26 1626 1611.4 1655.3 1315.6 1391.4 1756.3 FALSE FALSE TRUE 1202.181396 1604.141727 1006.946303 1143.678107 1422.051918 1412.601852 1241.126432 1016.066599 1512.007672 1316.511048 0.913157089 1.218479502 0.764859744 0.868718959 1.080167098 1.072988983 0.942739093 0.77178737 1.148495999 1 10.36250391 -3.966191653 16.67134031 0.977576567 0.677330137 0.019542693 0.144235953 446178062.8 5945718570 0.035683129 3930084710 0.000108096 3.966191653 -0.300246431 GPGLLES(ph)PSIFNFTADR ddPTM_HeLa_A485_30min_R1 2 GPGLLESPSIFNFTADR 17 0 Q92615 Q92615 LARP4B La-related protein 4B 1 0 GPGLLES(0.918)PS(0.082)IFNFTADR;GPGLLES(0.991)PS(0.009)IFNFTADR ; 162.29 7.81E-12 195974000 69484 86474 85654 66640 122105 84683 92658 85754 79572 93240 TRUE FALSE FALSE 84940.47608 96586.38208 117340.979 70280.37446 109947.7975 89116.87094 72860.86135 64722.69704 95541.37052 69996.98396 1.213487657 1.379864912 1.676371928 1.00404861 1.570750499 1.273153012 1.040914297 0.924649798 1.364935532 1 16.09500514 -6.622267093 4.614122454 1.078170965 1.371113254 0.308768108 0.201760815 0.258578458 9.50761185 0.076841586 0.058637584 2.39E-07 6.622267093 0.292942289 GPGLLES(ph)PSIFNFTADR ddPTM_HeLa_A486_30min_R1 1 GPGLLESPSIFNFTADR 17 0 Q92615 Q92615 LARP4B La-related protein 4B 1 0 GPGLLES(0.949)PS(0.049)IFNFT(0.002)ADR 58.723 0.028416 143070000 37807 47685 43071 17925 59723 46000 50520 48661 42334 45791 TRUE FALSE FALSE 35156.92454 43906.26693 59749.24468 41730.30588 52231.98445 40324.98769 37879.36165 37581.95256 46003.54521 34324.63555 1.024247569 1.27914736 1.740710243 1.215753793 1.521705434 1.174811824 1.103561947 1.094897352 1.340248614 1 15.06695678 -6.420102551 7.600189883 1.14212446 1.365188608 0.234363613 0.193573018 0.428635087 28.0929953 0.06898623 0.060672308 3.80E-07 6.420102551 0.223064148 GPGLLESPS(ph)IFNFTADR ddPTM_HeLa_A486_30min_R1 1 GPGLLESPSIFNFTADR 17 0 Q92615 Q92615 LARP4B La-related protein 4B 1 0 GPGLLES(0.357)PS(0.643)IFNFTADR 169.61 4.27E-12 131830000 74185 97458 86247 37639 105750 81936 87779 90268 68342 87582 TRUE FALSE FALSE 68985.01459 89735.07314 119644.1482 87625.49417 92485.84892 71827.56938 65815.76577 69715.94694 74265.93959 65650.89714 1.050785558 1.366852199 1.822429752 1.334718915 1.408752248 1.094083592 1.002511293 1.061919181 1.131225053 1 16.00252711 -6.284002884 4.080089865 1.053242432 1.417986888 0.472158499 0.178819891 0.203722039 7.952060727 0.067124108 0.061412503 5.20E-07 6.284002884 0.364744456 GPGQPS(ph)SPQR ddPTM_HeLa_A485_30min_R1 1 GPGQPSSPQR 10 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GPGQPS(0.592)S(0.408)PQR 84.658 0.004685 380600000 532380 476940 604860 590520 569460 476270 488260 337600 578370 769070 TRUE FALSE FALSE 650806.0943 532713.9842 828622.8843 622778.6123 512762.5629 501206.7607 383939.2623 254803.0707 694443.5539 577355.0027 1.12721998 0.922680122 1.435205169 1.078675355 0.88812353 0.868108457 0.664996857 0.441328246 1.202801657 1 19.13909915 -5.829188195 2.639497976 0.79467916 1.153362127 0.298796 0.221452275 0.316315615 4.493191487 0.073169354 0.088419481 1.48E-06 5.829188195 0.358682966 GPGQPSS(ph)PQR ddPTM_HeLa_A485_30min_R1 2 GPGQPSSPQR 10 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GPGQPS(0.012)S(0.988)PQR;GPGQPS(0.027)S(0.973)PQR ; 107.06 0.00089027 156662000 328760 331250 413160 401650 399300 298910 340850 253100 384910 506880 TRUE FALSE FALSE 401891.5278 369986.806 566005.077 423591.1225 359544.29 314560.4654 268024.613 191026.8282 462157.9064 380524.1444 1.056152504 0.972308358 1.487435384 1.113178043 0.944865905 0.826650477 0.704356391 0.502009744 1.214529783 1 18.53762847 -5.895864469 2.669210695 0.812246939 1.171055559 0.309690598 0.214360235 0.307250243 4.440542222 0.072471868 0.084125031 1.27E-06 5.895864469 0.358808619 GPGQPSS(ph)PQR ddPTM_HeLa_A486_30min_R1 3 GPGQPSSPQR 10 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GPGQPS(0.097)S(0.903)PQR;GPGQPS(0.002)S(0.998)PQR;GPGQPS(0.006)S(0.994)PQR ;; 118.28 0.00035234 819385000 796420 1121570 925650 250762 959780 983970 931630 898780 971830 897300 TRUE FALSE FALSE 740595.0707 1032692.709 1284086.47 583786.6088 839395.4428 862577.7857 698526.3202 694147.4142 1056069.007 672610.2396 1.101076117 1.535350858 1.909109309 0.867941899 1.247967089 1.282433325 1.038530607 1.03202029 1.570105456 1 19.35941122 -5.271801379 24.99632747 1.154914486 1.517195991 0.299674284 0.256784908 861.6297857 2078513.953 0.071774962 0.107775161 5.35E-06 5.271801379 0.362281505 GPGQPSS(ph)PQRLDR ddPTM_HeLa_A485_30min_R1 2 GPGQPSSPQRLDR 13 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GPGQPS(0.273)S(0.727)PQRLDR;GPGQPS(0.107)S(0.893)PQRLDR ; 105.89 0.00020195 1520850000 375550 522800 599360 434930 624610 581200 603130 616910 476250 568040 TRUE FALSE FALSE 459089.8019 583936.9122 821088.2055 458689.1246 562421.6353 611630.7333 474266.3484 465611.8552 571829.0066 426438.082 1.07656849 1.369335753 1.925457036 1.075628899 1.318882293 1.434277939 1.112157587 1.091862746 1.340942638 1 18.70197675 -6.76529522 24.98955717 1.143895933 1.376807063 0.186619169 0.234910737 180.2507151 1168178.926 0.097608333 0.068618116 1.72E-07 6.76529522 0.23291113 GPGQPSS(ph)PQRLDR ddPTM_HeLa_A486_30min_R1 2 GPGQPSSPQRLDR 13 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GPGQPS(0.045)S(0.955)PQRLDR;GPGQPS(0.043)S(0.957)PQRLDR ; 94.922 0.00059335 1065220000 476030 648480 625860 189767 743320 561480 640990 658380 531790 620660 TRUE FALSE FALSE 442662.7552 597092.0831 868209.7531 441787.1663 650085.8744 492210.3063 480607.5223 508481.2463 577885.9854 465242.6962 0.951466318 1.283399155 1.866143757 0.949584314 1.397304847 1.057964607 1.0330254 1.092937623 1.242117265 1 18.82762398 -6.272680418 24.20468418 1.087756093 1.302379022 0.145090081 0.247031174 974.7929454 2098958.682 0.087377283 0.077772219 5.34E-07 6.272680418 0.214622929 GPGQVPTATSALSLELQEVEPLGLPQAS(ph)PSR ddPTM_HeLa_A485_30min_R1 6 GPGQVPTATSALSLELQEVEPLGLPQASPSR 31 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GPGQVPTATSALSLELQEVEPLGLPQAS(0.753)PS(0.247)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.765)PS(0.235)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.5)PS(0.5)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.788)PS(0.212)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.5)PS(0.5)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.967)PS(0.033)R ;;;;; 211.6 1.04E-29 1388218000 422630.2 612105 681401 412981.2 668582 580672.1 668444 737635 556544.1 600095 TRUE FALSE FALSE 516642.8299 683685.3551 933479.5854 435541.3172 602015.6285 611075.1933 525625.4787 556728.8597 668237.3959 450502.3604 1.146814923 1.517606599 2.072085892 0.966790311 1.336320698 1.356430614 1.166754106 1.235795655 1.483316081 1 18.78117514 -5.290302355 24.99992475 1.238813511 1.572713289 0.290052377 0.2555685 932.4063332 807610.0143 0.071892317 0.106654345 5.13E-06 5.290302355 0.333899777 GPGQVPTATSALSLELQEVEPLGLPQAS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 GPGQVPTATSALSLELQEVEPLGLPQASPSR 31 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GPGQVPTATSALSLELQEVEPLGLPQAS(0.823)PS(0.177)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.805)PS(0.195)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.779)PS(0.221)R;GPGQVPTATSALSLELQEVEPLGLPQAS(0.815)PS(0.185)R ;;; 230.21 1.56E-39 1380725000 570558 724296 768684 256315 864212 626291 717808 735640 641089 709350 TRUE FALSE FALSE 530564.8306 666900.1471 1066339.031 596714.2734 755814.4725 549025.5841 538204.8462 568150.8309 696659.1107 531724.1429 0.997819711 1.254222055 2.00543655 1.122225277 1.421440953 1.032538378 1.012188093 1.068506741 1.310188977 1 19.02031845 -6.260557646 24.96942516 1.084435084 1.376962089 0.21524492 0.262092378 127.1442209 3600582.519 0.091216964 0.086272618 5.49E-07 6.260557646 0.292527006 GPGS(ph)PPRT(ph)PPAPGPPSFEEQLR ddPTM_HeLa_A485_30min_R1 2 GPGSPPRTPPAPGPPSFEEQLR 22 1 A0A6E1YH78;Q6ZTN6-2;Q6ZTN6;Q6ZTN6-3 A0A6E1YH78 ANKRD13D Ankyrin repeat domain-containing protein 13D 2 0 GPGS(1)PPRT(1)PPAPGPPSFEEQLR;GPGS(1)PPRT(1)PPAPGPPSFEEQLR ; 107.15 0.00015109 622130000 258720 380130 357130 319270 440340 333900 392890 408740 318470 406730 TRUE FALSE FALSE 316271.3714 424582.8968 489247.2484 336710.9117 396498.2035 351382.4877 308945.8419 308495.8741 382384.0078 305339.6963 1.035801683 1.390526361 1.602304759 1.102742014 1.298547841 1.150792026 1.011810274 1.010336611 1.252323273 1 18.22005564 -6.210867602 1.497986469 1.068769162 1.319217737 0.283382388 0.160334919 0.510044592 2.292327768 0.071784526 0.067676922 6.15E-07 6.210867602 0.250448575 GPGS(ph)PPRT(ph)PPAPGPPSFEEQLR ddPTM_HeLa_A486_30min_R1 2 GPGSPPRTPPAPGPPSFEEQLR 22 1 A0A6E1YH78;Q6ZTN6-2;Q6ZTN6;Q6ZTN6-3 A0A6E1YH78 ANKRD13D Ankyrin repeat domain-containing protein 13D 2 0 GPGS(1)PPRT(1)PPAPGPPSFEEQLR;GPGS(1)PPRT(1)PPAPGPPSFEEQLR ; 113.15 9.46E-05 540410000 363971 406747 406881 163258 506392 384536 423366 428520 347502 401113 TRUE FALSE FALSE 338458.5124 374514.8864 564436.2199 380072.8746 442875.5934 337095.858 317435.3489 330955.3505 377623.7532 300671.694 1.125674678 1.245594094 1.877250939 1.264079334 1.472954063 1.121142644 1.055754018 1.100720012 1.255933833 1 18.19782953 -6.271921275 21.68525811 1.109820191 1.407976865 0.351524254 0.196914509 141.2047793 292125.7444 0.070566947 0.063107666 5.35E-07 6.271921275 0.298156674 GPGSWWTS(ph)TESLCSNASGDSR ddPTM_HeLa_A485_30min_R1 4 GPGSWWTSTESLCSNASGDSR 21 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ES05 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 GPGSWWT(0.01)S(0.965)T(0.024)ES(0.001)LCSNASGDSR;GPGSWWT(0.006)S(0.985)T(0.009)ESLCSNASGDSR;GPGSWWT(0.005)S(0.993)T(0.001)ESLCSNASGDSR;GPGSWWT(0.021)S(0.945)T(0.026)ES(0.008)LCSNASGDSR ;;; 225.01 1.02E-35 752210000 785755 1119160 1284730 800233 1298540 1127070 1303570 1373330 1017740 1073510 TRUE FALSE FALSE 960543.4889 1250036.027 1760005.089 843947.7025 1169252.798 1186081.642 1025051.62 1036518.664 1221991.083 805903.7135 1.191883686 1.551098482 2.183890035 1.047206618 1.450859177 1.471741131 1.271928151 1.286156953 1.516299109 1 19.62024796 -12.23498788 0.144013326 0.072461336 1.631309523 0.180548059 0.288488843 127.9364387 1.809770727 37.74356911 1.845419051 5.82E-13 12.23498788 1.558848187 GPGSWWTS(ph)TESLCSNASGDSR ddPTM_HeLa_A486_30min_R1 4 GPGSWWTSTESLCSNASGDSR 21 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ES05 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 GPGSWWT(0.009)S(0.932)T(0.047)ES(0.012)LCSNASGDSR;GPGSWWT(0.001)S(0.983)T(0.016)ESLCSNASGDSR;GPGSWWT(0.004)S(0.955)T(0.013)ES(0.028)LCSNASGDSR;GPGSWWT(0.015)S(0.966)T(0.019)ESLCSNASGDSR ;;; 243.01 1.80E-46 703330000 518857 655158 631054 204064 799922 559407 650588 629787 606323 623982 TRUE FALSE FALSE 482487.8037 603240.894 875415.009 475071.3048 699588.3238 490393.052 487804.0012 486398.2483 658879.5658 467732.8458 1.031545695 1.289712492 1.871613287 1.015689424 1.495700655 1.0484469 1.04291158 1.039906119 1.408666447 1 18.83532522 -6.274883192 24.59526741 1.106413169 1.34943333 0.177934183 0.249913331 1138.708552 2083244.344 0.08741256 0.077536094 5.31E-07 6.274883192 0.243020161 GPHHLDNS(ph)SPGPGSEAR ddPTM_HeLa_A485_30min_R1 1 GPHHLDNSSPGPGSEAR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GPHHLDNS(0.579)S(0.42)PGPGSEAR 100.21 0.00031202 53634000 49535 51810 62012 55192 74361 52259 58211 38689 67010 81462 TRUE FALSE FALSE 60553.88986 57868.72881 84952.81933 58206.99921 66957.35774 54995.20043 45773.74431 29200.46209 80458.29235 61155.0226 0.990170346 0.946262896 1.389138876 0.951794256 1.094879127 0.899275286 0.74848708 0.477482647 1.31564488 1 15.90018337 -6.355946618 3.924243769 0.839997218 1.07850933 0.127929888 0.230323018 0.408261862 11.44942783 0.082857729 0.072702071 4.41E-07 6.355946618 0.238512112 GPHHLDNS(ph)SPGPGSEAR ddPTM_HeLa_A486_30min_R1 1 GPHHLDNSSPGPGSEAR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GPHHLDNS(0.653)S(0.347)PGPGSEAR 106.03 0.00015067 56385000 63530 75020 71985 14821 87172 68849 62254 70390 64966 57202 TRUE FALSE FALSE 59076.87507 69075.14198 99859.51983 34504.03701 76238.07491 60355.11039 46677.39074 54363.7336 70597.30519 42878.24688 1.377781961 1.610960032 2.328908645 0.804697942 1.778012873 1.407592772 1.08860306 1.267862787 1.646459693 1 15.3879583 -5.266479998 24.99447118 1.313406645 1.756391182 0.284949858 0.351787601 581.8760842 2885300.541 0.096932362 0.148963497 5.41E-06 5.266479998 0.442984538 GPHHLDNSS(ph)PGPGSEAR ddPTM_HeLa_A485_30min_R1 5 GPHHLDNSSPGPGSEAR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GPHHLDNS(0.012)S(0.988)PGPGSEAR;GPHHLDNS(0.05)S(0.95)PGPGSEAR;GPHHLDNS(0.001)S(0.999)PGPGSEAR;GPHHLDNS(0.005)S(0.995)PGPGSEAR;GPHHLDNS(0.238)S(0.761)PGPGS(0.001)EAR ;;;; 227.66 1.35E-34 2682546000 919310 969810 1392672 1064433 1460982 886781 960104 794078 1213036 1532454 TRUE FALSE FALSE 1123807.338 1083220.843 1907879.327 1122580.28 1315521.502 933211.4819 754969.9371 599329.1254 1456481.199 1150441.421 0.976848815 0.941569752 1.658388939 0.975782217 1.143492818 0.81117688 0.656243702 0.520955796 1.266019436 1 20.13375609 -6.260517546 7.238811934 0.80825117 1.148508184 0.217397892 0.267220782 0.181820122 73.472252 0.091666422 0.08620726 5.49E-07 6.260517546 0.340257014 GPHHLDNSS(ph)PGPGSEAR ddPTM_HeLa_A486_30min_R1 4 GPHHLDNSSPGPGSEAR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GPHHLDNS(0.005)S(0.995)PGPGSEAR;GPHHLDNS(0.003)S(0.997)PGPGSEAR;GPHHLDNS(0.058)S(0.942)PGPGSEAR;GPHHLDNS(0.207)S(0.793)PGPGSEAR ;;; 204.5 2.65E-25 1978557000 1008057 1206420 1110106 185146 1202567 1024791 926374 1009152 1035032 841007 TRUE FALSE FALSE 937397.4099 1110818.885 1539968.773 431029.2448 1051729.833 898362.7057 694585.427 779390.1192 1124749.407 630413.3732 1.486956733 1.762048416 2.442792045 0.68372478 1.668317771 1.425037513 1.101793611 1.236315967 1.784145856 1 19.26593861 -5.258214811 24.99698321 1.297061315 1.883743952 0.371614703 0.371818812 320.6433825 2485628.451 0.100296689 0.164850099 5.52E-06 5.258214811 0.586682637 GPHSPQVPSQVQS(ph)PMTSR ddPTM_HeLa_A486_30min_R1 1 GPHSPQVPSQVQSPMTSR 18 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 GPHSPQVPSQVQS(0.997)PMT(0.001)S(0.002)R 109.68 8.20E-05 151990000 117030 106570 100660 60127 134900 113750 162070 136940 97950 202280 TRUE FALSE FALSE 108826.8013 98125.00508 139638.2478 139978.6947 117979.5841 99716.68153 121518.3718 105761.7514 106440.3849 151627.7714 0.717723411 0.647144017 0.920927918 0.923173198 0.77808691 0.657641279 0.801425561 0.697509107 0.701984761 1 17.21017449 -10.15650727 3.87985077 1.000123934 0.763610485 0.372025779 0.093228342 140205592.6 320343632.3 236380.7456 0.025272825 6.97E-11 10.15650727 -0.236513449 GPIAQWADGAIS(ph)PNGHRPQLR ddPTM_HeLa_A485_30min_R1 4 GPIAQWADGAISPNGHRPQLR 21 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 GPIAQWADGAIS(1)PNGHRPQLR;GPIAQWADGAIS(1)PNGHRPQLR;GPIAQWADGAIS(1)PNGHRPQLR;GPIAQWADGAIS(1)PNGHRPQLR ;;; 188.3 1.40E-19 2020630000 1131090 1578640 1676450 1138650 1748140 1472880 1718240 1836010 1426450 1540440 TRUE FALSE FALSE 1382697.068 1763248.216 2296638.618 1200851.566 1574089.044 1549997.719 1351123.987 1385725.669 1712725.431 1156436.658 1.195653094 1.524725288 1.985961447 1.038406694 1.361154572 1.340322195 1.168351053 1.198272002 1.481036959 1 20.14125482 -5.289942357 24.99806463 1.24294711 1.56437477 0.326028628 0.224460575 854.409334 749343.6713 0.062856601 0.093249909 5.13E-06 5.289942357 0.321427659 GPIAQWADGAIS(ph)PNGHRPQLR ddPTM_HeLa_A486_30min_R1 3 GPIAQWADGAISPNGHRPQLR 21 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 GPIAQWADGAIS(1)PNGHRPQLR;GPIAQWADGAIS(1)PNGHRPQLR;GPIAQWADGAIS(1)PNGHRPQLR ;; 182.39 2.36E-19 1572920000 1003250 1113680 1177600 337250 1352880 904480 1004770 1101130 924090 1111870 TRUE FALSE FALSE 932927.3558 1025427.941 1633598.257 785135.0437 1183189.175 792894.4537 753365.9186 850426.7365 1004190.865 833450.5149 1.119355426 1.230340521 1.960042292 0.942029586 1.419627385 0.951339569 0.903911996 1.020368602 1.204859613 1 19.66873702 -6.26345338 24.9444235 1.010357488 1.341477673 0.275996984 0.25745494 241.0939407 2986055.387 0.088808616 0.082225219 5.45E-07 6.26345338 0.331120185 GPIHS(ph)PVELK ddPTM_HeLa_A485_30min_R1 4 GPIHSPVELK 10 0 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein 1 0 GPIHS(1)PVELK;GPIHS(1)PVELK;GPIHS(1)PVELK;GPIHS(1)PVELK ;;; 142.91 4.49E-06 1110120000 1403530 1606800 1317400 1893750 1812900 1769740 2393220 2488040 1469140 2474160 TRUE FALSE FALSE 1715740.406 1794701.283 1804761.082 1997200.767 1632401.311 1862400.85 1881888.996 1877844.289 1763982.922 1857397.446 0.923733588 0.966245155 0.971661227 1.075268393 0.878864841 1.002693772 1.01318595 1.01100833 0.949706767 1 20.82485113 -4.376804981 2.065428783 0.988791354 0.914872842 0.145923705 0.047680617 1.068765238 6.079157737 0.012596087 0.135132757 4.20E-05 4.376804981 -0.073918512 GPIHS(ph)PVELK ddPTM_HeLa_A486_30min_R1 5 GPIHSPVELK 10 0 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein 1 0 GPIHS(1)PVELK;GPIHS(1)PVELK;GPIHS(1)PVELK;GPIHS(1)PVELK;GPIHS(1)PVELK ;;;; 132.59 4.79E-05 1213821000 1749780 1599540 1030731 666360 1643320 1606850 1954720 1896580 1338645 2464950 TRUE FALSE FALSE 1627129.458 1472786.625 1429857.647 1551319.756 1437199.482 1408613.184 1465628.381 1464770.136 1454679.826 1847710.476 0.880619274 0.797087338 0.773853732 0.83959028 0.777827209 0.762356009 0.793213223 0.792748732 0.787287752 1 20.81730728 -10.59285821 6.751308488 1.00035929 0.798541975 0.765514916 0.033106513 0.000178634 1.08E-05 0.03198267 0.007743369 2.55E-11 10.59285821 -0.201817314 GPILGS(ph)PHT(ph)PLFLPHGLEPEAGGTLPSR ddPTM_HeLa_A485_30min_R1 1 GPILGSPHTPLFLPHGLEPEAGGTLPSR 28 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 2 0 GPILGS(1)PHT(1)PLFLPHGLEPEAGGTLPSR 54.703 0.015305 18853000 7344.8 14476 11999 9176.3 12565 12384 14626 17252 10040 14839 TRUE FALSE FALSE 8978.625421 16168.84228 16437.92942 9677.578033 11313.98448 13032.40709 11501.03562 13020.91995 12054.93591 11139.91039 0.805987221 1.451433782 1.475589017 0.86873033 1.015626166 1.169884374 1.032417247 1.168853204 1.082139396 1 13.44345001 -5.264972898 24.99781678 1.058322221 1.265046378 0.180789416 0.188911324 497.4376897 3519118.169 0.052697894 0.081735287 5.43E-06 5.264972898 0.206724157 GPILGS(ph)PHTPLFLPHGLEPEAGGTLPSR ddPTM_HeLa_A485_30min_R1 3 GPILGSPHTPLFLPHGLEPEAGGTLPSR 28 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 GPILGS(1)PHTPLFLPHGLEPEAGGTLPSR;GPILGS(0.999)PHT(0.001)PLFLPHGLEPEAGGTLPSR;GPILGS(1)PHTPLFLPHGLEPEAGGTLPSR ;; 225.57 1.13E-38 379097000 123142 172662 172496 124280 190242 166663 177936 203685 142278 151654 TRUE FALSE FALSE 150534.5131 192853.3189 236309.4486 131069.1017 171300.8385 175389.217 139918.52 153730.9344 170831.8895 113849.4488 1.322224347 1.69393283 2.075631029 1.151249331 1.50462598 1.540536374 1.228978458 1.350300208 1.500506953 1 16.79676778 -9.903639949 0.134359897 0.444742629 1.813871556 0.302861066 0.240513794 39.02929593 1.127615058 10.23675898 2.439588805 1.25E-10 9.903639949 1.369128927 GPILGS(ph)PHTPLFLPHGLEPEAGGTLPSR ddPTM_HeLa_A486_30min_R1 3 GPILGSPHTPLFLPHGLEPEAGGTLPSR 28 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 GPILGS(1)PHTPLFLPHGLEPEAGGTLPSR;GPILGS(1)PHTPLFLPHGLEPEAGGTLPSR;GPILGS(0.995)PHT(0.005)PLFLPHGLEPEAGGTLPSR ;; 313.12 8.43E-109 625408000 205914 233735 210371 109081 280748 202871 236300 220206 190308 250057 TRUE FALSE FALSE 191480.4919 215212.9874 291832.2851 253946.0806 245533.968 177842.8387 177175.2407 170069.9009 206804.0507 187441.0996 1.021550195 1.148163278 1.55692794 1.354804689 1.30992599 0.948793189 0.945231548 0.907324494 1.103301523 1 17.5160778 -6.260896147 24.97745329 0.97290676 1.290778464 0.534538018 0.138387045 40.13437653 1845378.974 0.050751975 0.047874624 5.48E-07 6.260896147 0.317871704 GPKPEPPGS(ph)GSPAPPR ddPTM_HeLa_A485_30min_R1 3 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.5)GS(0.5)PAPPR;GPKPEPPGS(0.5)GS(0.5)PAPPR;GPKPEPPGS(0.5)GS(0.5)PAPPR ;; 96.379 0.00034535 1940100000 1628570 1991630 1667820 1918330 2231750 2028270 2503090 2430050 1826740 2455170 TRUE FALSE FALSE 1990839.778 2224533.804 2284816.022 2023123.51 2009549.134 2134467.081 1968284.373 1834076.427 2193349.962 1843141.303 1.080134103 1.206925264 1.239631502 1.097649707 1.090284901 1.158059383 1.067896623 0.995081834 1.190006408 1 20.81373525 -6.162397678 0.801157298 1.062069218 1.172085361 0.240432 0.069370735 0.915026478 1.292187676 0.044958636 0.047782558 6.88E-07 6.162397678 0.110016143 GPKPEPPGS(ph)GSPAPPR ddPTM_HeLa_A486_30min_R1 2 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.5)GS(0.5)PAPPR;GPKPEPPGS(0.5)GS(0.5)PAPPR ; 120.75 2.69E-05 407050000 737160 741140 503120 231934 710980 693370 772020 748350 583090 831490 TRUE FALSE FALSE 685488.8907 682409.3672 697941.538 539954.0733 621802.2588 607829.0591 578852.4304 577967.0414 633632.7107 623279.4919 1.099809796 1.094868957 1.119789031 0.86631131 0.997629903 0.975211068 0.928720482 0.927299949 1.016610877 1 19.24951972 -5.241937679 24.90269773 0.956842173 1.103827252 0.717100355 0.042007782 396.8444747 506749.8545 0.010992858 0.019004477 5.73E-06 5.241937679 0.146985079 GPKPEPPGSGS(ph)PAPPR ddPTM_HeLa_A485_30min_R1 1 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.113)GS(0.887)PAPPR 132.14 6.41E-06 1802900000 1045300 1231100 1115700 1209400 1508800 1390200 1597400 1688700 1309100 1607600 TRUE FALSE FALSE 1277823.379 1375066.436 1528443.858 1275466.46 1358578.574 1462988.722 1256102.44 1274543.677 1571824.362 1206854.906 1.058804478 1.139380077 1.266468613 1.056851535 1.125718235 1.212232486 1.040806508 1.056086918 1.302413699 1 20.20282081 -6.765503829 24.99934169 1.104500715 1.143944756 0.046284918 0.095578897 442.1313811 2719387.375 0.038501964 0.027039863 1.72E-07 6.765503829 0.039444041 GPKPEPPGSGS(ph)PAPPR ddPTM_HeLa_A486_30min_R1 3 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.141)GS(0.859)PAPPR;GPKPEPPGS(0.004)GS(0.996)PAPPR;GPKPEPPGS(0.188)GS(0.812)PAPPR ;; 139.98 1.04E-06 5064260000 2209964 2238575 1671296 750608 2344744 2122285 2383305 2493234 1883490 2620263 TRUE FALSE FALSE 2055056.936 2061182.164 2318466.57 1747453.358 2050644.344 1860459.055 1786976.881 1925579.045 2046752.43 1964132.09 1.046292633 1.049411175 1.180402572 0.889682199 1.044046047 0.947216872 0.90980484 0.98037146 1.042064554 1 20.90546052 -5.264622409 24.99958956 0.971708216 1.08777303 0.46486446 0.058301692 246.7400114 1937908.475 0.01612246 0.025105409 5.44E-06 5.264622409 0.116064814 GPKPEPPGSGS(ph)PAPPRR ddPTM_HeLa_A485_30min_R1 1 GPKPEPPGSGSPAPPRR 17 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.068)GS(0.932)PAPPRR 146.17 3.10E-08 340230000 383010 470890 402410 399700 502580 485400 536160 560940 447080 549460 TRUE FALSE FALSE 468209.2531 525956.4893 551278.2047 421534.5989 452541.3705 510814.7934 421605.036 423368.5855 536804.8551 412489.7341 1.135080984 1.275077768 1.336465272 1.021927491 1.097097293 1.238369713 1.022098252 1.026373629 1.301377491 1 18.65399869 -5.262028716 24.99999913 1.104402938 1.251494983 0.296449239 0.104255735 67.61633044 2868397.362 0.028565131 0.045485132 5.47E-06 5.262028716 0.147092045 GPKPEPPGSGS(ph)PAPPRR ddPTM_HeLa_A486_30min_R1 1 GPKPEPPGSGSPAPPRR 17 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.036)GS(0.964)PAPPRR 97.69 0.00024505 239360000 295440 290840 199940 98589 308310 289910 307410 304240 231260 318420 TRUE FALSE FALSE 274731.1817 267792.7792 277362.1226 229520.1744 269638.8849 254143.8518 230492.7665 234971.1935 251305.803 238685.5594 1.151017189 1.121947971 1.162039812 0.961600588 1.129682439 1.064764255 0.965675373 0.984438246 1.05287393 1 17.86475176 -5.097005046 0.500724009 0.999877285 1.197478068 0.471688443 0.054075196 1.933347824 0.666915266 0.039973168 0.206576204 8.00E-06 5.097005046 0.197600783 GPKS(ph)DDDGFEIVPIEDPAK ddPTM_HeLa_A486_30min_R1 1 GPKSDDDGFEIVPIEDPAK 19 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 GPKS(1)DDDGFEIVPIEDPAK 102.21 7.81E-05 65283000 125490 140170 66824 139550 155930 194730 280150 257300 133210 321760 TRUE FALSE FALSE 116693.799 129062.4187 92700.04241 324879.4525 136371.8054 170706.1925 210053.5069 198718.4068 144756.7501 241189.2017 0.483826797 0.535108611 0.384345741 1.34699004 0.565414224 0.707768803 0.870907592 0.823910878 0.600179233 1 17.87980579 GPLMMYISK ddPTM_HeLa_A485_30min_R1 1 GPLMMYISK 9 0 P13639 P13639 EEF2 Elongation factor 2 0 0 114.89 0.0068322 16670000 51768 61181 36550 21307 38780 53385 52940 68006 44525 37448 FALSE FALSE TRUE 63283.613 68335.58575 50071.36597 22470.94746 34918.92704 56180.15605 41628.93652 51327.42187 53460.75909 28112.90278 2.251052248 2.43075524 1.781081319 0.799310823 1.242096105 1.998376208 1.480776882 1.825760302 1.901644932 1 14.77894481 -4.898899425 4.675516368 1.497497659 2.33066472 0.469088951 0.367246921 0.191052958 7.048834467 0.102669366 0.225789546 1.26E-05 4.898899425 0.83316706 GPLNSES(ph)SNQSLCSVGSLSDKEVETPEKK ddPTM_HeLa_A485_30min_R1 1 GPLNSESSNQSLCSVGSLSDKEVETPEKK 29 2 Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3;J3KST4;J3QS73 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 GPLNS(0.053)ES(0.329)S(0.289)NQS(0.289)LCS(0.038)VGS(0.002)LSDKEVETPEKK 52.971 0.013373 121030000 36432 14565 11112 38769 37358 33380 57053 47619 27390 88603 TRUE FALSE FALSE 44536.17271 16268.25005 15222.79121 40886.8523 33638.50635 35127.72518 44863.16047 35940.36559 32886.92176 66515.90272 0.669556766 0.244576851 0.228859424 0.614692887 0.505721263 0.528110177 0.6744727 0.540327412 0.494421942 1 16.02141168 -14 0.153059808 2.841324209 0.343818303 0.538413537 0.142270838 104.123147 0.936135615 58.10574962 0.702820141 1.00E-14 14 -2.497505907 GPLNSES(ph)SNQSLCSVGSLSDKEVETPEKK ddPTM_HeLa_A486_30min_R1 1 GPLNSESSNQSLCSVGSLSDKEVETPEKK 29 2 Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3;J3KST4;J3QS73 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 GPLNS(0.005)ES(0.553)S(0.423)NQS(0.018)LCS(0.001)VGSLSDKEVETPEKK 84.948 0.00099801 101630000 126470 77097 28105 51172 85287 141060 180210 142630 71693 225510 TRUE FALSE FALSE 117605.1061 70987.55294 38988.00868 119131.0021 74589.50919 123657.4514 135119.5519 110156.2626 77907.40696 169040.8282 0.695720125 0.419943239 0.230642556 0.704746915 0.441251442 0.731524169 0.799330868 0.651654773 0.460879231 1 17.36701221 -6.26611256 24.76565173 0.711322058 0.490680305 0.289527348 0.179081783 496.0990835 2629080.784 0.061818521 0.056313363 5.42E-07 6.26611256 -0.220641753 GPLNSESS(ph)NQSLCSVGSLSDKEVETPEKK ddPTM_HeLa_A486_30min_R1 1 GPLNSESSNQSLCSVGSLSDKEVETPEKK 29 2 Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3;J3KST4;J3QS73 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 GPLNS(0.002)ES(0.189)S(0.805)NQS(0.005)LCSVGSLSDKEVETPEKK 186.92 6.13E-21 203230000 81432 62790 18254 38691 56663 109420 129990 104370 43121 172430 TRUE FALSE FALSE 75724.03732 57814.29172 25322.43766 90074.60333 49555.79818 95920.8729 97465.12711 80607.22938 46858.763 129252.4057 0.585861725 0.447297607 0.195914633 0.696889183 0.383403295 0.7421206 0.754068186 0.623642005 0.362536873 1 16.97983161 -6.263100938 24.97856188 0.676550827 0.459344485 0.271343173 0.190807076 225.433677 3388970.222 0.064673868 0.0600255 5.46E-07 6.263100938 -0.217206342 GPLPVK(ac)R ddPTM_HeLa_A485_30min_R1 2 GPLPVKR 7 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 1 ; GPLPVK(1)R;GPLPVK(1)R 153.67 0.0040181 474390000 377900 553850 592770 336010 576790 540250 710890 867900 788080 815070 FALSE TRUE FALSE 461962.5513 618617.9396 812060.2902 354365.3755 519362.7624 568536.6546 559002.5441 655046.1642 946240.4273 611888.0493 0.754978875 1.010998565 1.327138667 0.57913433 0.84878723 0.929151428 0.913569966 1.070532698 1.546427371 1 19.2229082 -7.529256936 24.26185066 1.284969354 0.920378196 0.308692841 0.217321619 139.0908145 529059.0487 0.143921177 0.054737597 2.96E-08 7.529256936 -0.364591158 GPLPVK(ac)R ddPTM_HeLa_A486_30min_R1 2 GPLPVKR 7 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 1 ; GPLPVK(1)R;GPLPVK(1)R 153.67 0.0040181 538200000 679870 785220 726720 273080 898010 677420 745650 855070 781240 876680 FALSE TRUE FALSE 632214.6239 722996.3075 1008125.446 635744.0407 785373.2122 593846.8079 559080.4833 660389.227 848958.5122 657153.6218 0.962049973 1.10019375 1.53407881 0.967420736 1.195113572 0.903665122 0.850760712 1.004923667 1.291872226 1 19.32587114 -6.246846246 24.31818053 1.000584344 1.159903552 0.127334128 0.18377053 1155.879105 1926171.326 0.062539964 0.062255158 5.66E-07 6.246846246 0.159319208 GPLQT(ph)ASVSPSMPFSASLLGTLPIGAR ddPTM_HeLa_A485_30min_R1 1 GPLQTASVSPSMPFSASLLGTLPIGAR 27 0 Q8IWR0;I3L282;I3L323 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 0 GPLQT(0.37)AS(0.223)VS(0.319)PS(0.088)MPFS(0.001)ASLLGTLPIGAR 71.091 0.012402 37751000 10421 14384 12993 13389 17604 12445 14368 18455 14259 12028 TRUE FALSE FALSE 12739.1155 16066.08368 17799.65138 14120.40717 15851.28395 13096.60096 11298.15942 13928.88231 17120.65051 9029.640959 1.410810857 1.779260521 1.97124686 1.563783901 1.75547223 1.450401075 1.251230196 1.542573218 1.896049974 1 13.14045291 -6.268324833 22.89153354 1.450910377 1.708667467 0.217098517 0.252106281 292.6215841 972850.6316 0.087408191 0.078952757 5.39E-07 6.268324833 0.25775709 GPLQTAS(ph)VSPSMPFSASLLGTLPIGAR ddPTM_HeLa_A485_30min_R1 1 GPLQTASVSPSMPFSASLLGTLPIGAR 27 0 Q8IWR0;I3L282;I3L323 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 0 GPLQT(0.246)AS(0.488)VS(0.132)PS(0.132)MPFSASLLGTLPIGAR 68.269 0.0078888 42734000 12859 16400 17912 12878 21428 16744 20172 21090 14147 17690 TRUE FALSE FALSE 15719.44019 18317.83734 24538.39418 13581.49253 19294.55308 17620.68995 15862.08741 15917.64443 16986.17314 13280.20856 1.183674196 1.379333559 1.847741628 1.02268669 1.452880276 1.326838345 1.194415535 1.19859898 1.279059215 1 13.69699018 -7.781038981 0.369370214 0.986910716 1.424122944 0.227072353 0.202664387 1.963446917 0.802493431 0.320265251 0.20890387 1.66E-08 7.781038981 0.437212228 GPLS(ph)PFNSR ddPTM_HeLa_A485_30min_R1 6 GPLSPFNSR 9 0 A1L390-3;A1L390;A0A0U1RR71;G3V3I3;G3V278 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 GPLS(1)PFNSR;GPLS(0.996)PFNS(0.004)R;GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR ;;;;; 160.88 1.35E-05 3502259000 980957 1394400 1405620 1133702 1717340 1385461 1512630 1749090 1325382 1455570 TRUE FALSE FALSE 1199167.5 1557462.95 1925617.331 1195633.27 1546355.6 1458001.596 1189444.243 1320122.935 1591374.01 1092723.187 1.097411966 1.425304203 1.762218789 1.094177633 1.415139368 1.334282656 1.088513777 1.208103709 1.456337735 1 20.05949655 -6.582637493 9.20021212 1.205879136 1.370701221 0.131938097 0.206953024 0.743008983 106.896167 0.079294177 0.061375566 2.61E-07 6.582637493 0.164822084 GPLS(ph)PFNSR ddPTM_HeLa_A486_30min_R1 6 GPLSPFNSR 9 0 A1L390-3;A1L390;A0A0U1RR71;G3V3I3;G3V278 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 GPLS(0.997)PFNS(0.003)R;GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR;GPLS(1)PFNSR ;;;;; 158.06 2.51E-05 3007746000 1751740 2082400 1940680 692552 2467510 1803770 2039850 2083790 1721490 2057650 TRUE FALSE FALSE 1628952.072 1917383.04 2692163.269 1612296.056 2158011.887 1581239.197 1529457.955 1609356.506 1870710.139 1542401.047 1.056114475 1.243115754 1.745436619 1.045315717 1.399125015 1.025180319 0.991608478 1.043409889 1.212855854 1 20.55674651 -6.270804481 24.56414664 1.05338636 1.305621712 0.285617272 0.192117763 705.3692513 1850139.6 0.067520661 0.060361106 5.36E-07 6.270804481 0.252235353 GPLTEAELALFDPFSKEEGAAPS(ph)PTHVAELATMEVESAR ddPTM_HeLa_A486_30min_R1 1 GPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVESAR 39 1 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 0 GPLTEAELALFDPFSKEEGAAPS(0.972)PT(0.028)HVAELATMEVESAR 163.79 5.89E-15 100380000 25826 26239 22654 16319 34964 34343 42268 34206 22389 32452 TRUE FALSE FALSE 24015.73077 24159.72608 31426.2355 37991.45672 30578.48909 30106.10983 31692.09933 26418.04051 24329.69655 24325.80797 0.987253159 0.993172605 1.291888661 1.561775739 1.25703899 1.237620139 1.302817952 1.086008758 1.000159854 1 14.5702001 -7.456643438 3.899509876 1.007708098 1.23937306 0.279913696 0.153582726 0.338116427 9.950744591 0.11113896 0.046068916 3.49E-08 7.456643438 0.231664962 GPPASS(ph)PAPAPK ddPTM_HeLa_A485_30min_R1 5 GPPASSPAPAPK 12 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 GPPAS(0.001)S(0.999)PAPAPK;GPPAS(0.001)S(0.999)PAPAPK;GPPAS(0.165)S(0.835)PAPAPK;GPPAS(0.358)S(0.642)PAPAPK;GPPAS(0.227)S(0.773)PAPAPK ;;;; 202.61 4.18E-17 9957550000 10173530 11526440 9807630 10280520 13073010 11841760 13897350 14668150 9843080 14314740 TRUE FALSE FALSE 12436596.65 12874356.89 13435880.47 10842118.78 11771415.22 12461776.24 10928067.64 11070763.21 11818495.87 10746338.76 1.157286861 1.198022617 1.250275165 1.008912804 1.095388437 1.159629946 1.016910772 1.030189301 1.099769525 1 23.35734189 -5.25986504 24.99999886 1.063938366 1.201477657 0.620211547 0.051227285 97.87126131 1554156.963 0.014450769 0.023432771 5.50E-06 5.25986504 0.137539291 GPPASS(ph)PAPAPK ddPTM_HeLa_A486_30min_R1 4 GPPASSPAPAPK 12 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 GPPAS(0.001)S(0.999)PAPAPK;GPPASS(1)PAPAPK;GPPAS(0.01)S(0.99)PAPAPK;GPPAS(0.003)S(0.997)PAPAPK ;;; 229.56 1.84E-23 16128900000 17696590 22046900 16780910 8033140 23117500 19305900 23234800 20833200 16052390 20637000 TRUE FALSE FALSE 16456150.43 20299823.35 23278927.76 18701555.89 20217887.59 16924134.35 17421207.29 16089935.15 17443824.09 15469360.88 1.063789937 1.31225999 1.504840953 1.20894173 1.306963342 1.094042248 1.126174987 1.040116348 1.127637026 1 23.88291026 -6.276693988 8.243271012 1.082856143 1.289875083 0.462730358 0.108335454 0.189623838 83.63828881 0.038397752 0.034896668 5.29E-07 6.276693988 0.20701894 GPPASS(ph)PAPAPKFS(ph)PVTPK ddPTM_HeLa_A485_30min_R1 1 GPPASSPAPAPKFSPVTPK 19 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 2 0 GPPAS(0.021)S(0.979)PAPAPKFS(1)PVTPK 159.98 3.12E-12 651930000 585230 533650 311980 747890 742280 630060 970740 1106000 445160 1044800 TRUE FALSE FALSE 715412.3945 596055.7254 427394.3846 788745.3369 668375.9969 663048.9673 763333.4688 834751.7659 534499.5288 784350.5881 0.912107934 0.759935333 0.54490223 1.005603041 0.852139346 0.845347702 0.973204432 1.064258481 0.681454871 1 19.58113913 -5.286162325 24.95217802 0.91670723 0.741077105 0.279312334 0.131339303 956.3360579 965201.0954 0.036616496 0.054337722 5.17E-06 5.286162325 -0.175630125 GPPASS(ph)PAPAPKFS(ph)PVTPK ddPTM_HeLa_A486_30min_R1 2 GPPASSPAPAPKFSPVTPK 19 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 2 0 GPPAS(0.114)S(0.886)PAPAPKFS(0.994)PVT(0.006)PK;GPPAS(0.454)S(0.546)PAPAPKFS(1)PVTPK ; 129.78 4.45E-06 1963900000 926380 935280 524170 640190 953880 1069510 1464530 1416760 652670 1464140 TRUE FALSE FALSE 861445.5458 861165.0066 727142.6618 1490394.673 834235.4758 937564.7302 1098089.104 1094194.676 709243.9611 1097509.814 0.784909196 0.784653582 0.662538642 1.357978448 0.760116643 0.854265464 1.000527822 0.9969794 0.646230177 1 20.06580241 GPPASSPAPAPKFS(ph)PVTPK ddPTM_HeLa_A485_30min_R1 2 GPPASSPAPAPKFSPVTPK 19 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 GPPASSPAPAPKFS(0.997)PVT(0.003)PK;GPPASSPAPAPKFS(0.985)PVT(0.015)PK ; 210.16 2.92E-26 7015800000 988490 1029320 642850 1224240 1339400 1439770 2079340 2628620 950140 1867380 TRUE FALSE FALSE 1208376.19 1149690.02 880666.9662 1291117.131 1206044.633 1515154.131 1635072.022 1983946.823 1140824.383 1401876.533 0.861970482 0.820107901 0.628205798 0.920992043 0.860307313 1.080804262 1.166345241 1.415207957 0.813783779 1 20.41892786 -6.180198999 1.956430689 1.135056774 0.793624883 0.431713138 0.157766645 0.291086497 2.194757011 0.060860836 0.059037915 6.60E-07 6.180198999 -0.341431891 GPPASSPAPAPKFS(ph)PVTPK ddPTM_HeLa_A486_30min_R1 2 GPPASSPAPAPKFSPVTPK 19 1 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 GPPASSPAPAPKFS(1)PVTPK;GPPASSPAPAPKFS(0.985)PVT(0.015)PK ; 233.15 3.18E-36 4674100000 4678400 4097100 2143200 2929000 5132300 5187900 8145300 7912000 3225200 7865500 TRUE FALSE FALSE 4350468.319 3772430.875 2973104.437 6818860.023 4488559.077 4547869.645 6107259.788 6110610.318 3504762.933 5895927.604 0.737876821 0.639836702 0.504264068 1.156537271 0.761298201 0.771357783 1.035843755 1.036412034 0.594437919 1 22.49128738 -5.24368316 24.99934571 0.903023876 0.628576949 0.380277262 0.164097946 894.3396891 1259157.599 0.043906321 0.075839645 5.71E-06 5.24368316 -0.274446927 GPPDFS(ph)S(ph)DEEREPTPVLGSGAAAAGR ddPTM_HeLa_A485_30min_R1 5 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 2 0 GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR ;;;; 118.55 0.00016636 8865210000 1809628 2209610 2278660 1884090 2715880 2061270 2566030 2716370 2215110 3023890 TRUE FALSE FALSE 2212173.505 2468004.668 3121631.157 1987013.066 2445477.451 2169194.91 2017776.728 2050175.998 2659662.259 2270089.874 0.974487192 1.087183683 1.375113467 0.875301498 1.077260191 0.955554639 0.888853235 0.903125476 1.171610996 1 21.11431798 -5.30179821 24.99998641 0.976662998 1.139754271 0.262226686 0.125689338 678.3128852 420174.5043 0.035395004 0.052499865 4.99E-06 5.30179821 0.163091274 GPPDFS(ph)S(ph)DEEREPTPVLGSGAAAAGR ddPTM_HeLa_A486_30min_R1 4 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 2 0 GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR;GPPDFS(1)S(1)DEEREPTPVLGSGAAAAGR ;;; 107.94 0.00054116 11890290000 1195140 1406210 1384980 464536 1654500 1254530 1412010 1418260 1247800 1361150 TRUE FALSE FALSE 1111366.858 1294776.798 1921281.347 1081463.284 1446977.182 1099758.844 1058710.163 1095353.158 1355960.309 1020309.18 1.089245181 1.26900436 1.883038381 1.059936836 1.418175206 1.077868224 1.037636614 1.073550233 1.328970017 1 19.96057496 -6.26688136 24.50211907 1.10407887 1.353898861 0.218233506 0.226985555 554.1414345 2494972.72 0.079395082 0.072065965 5.41E-07 6.26688136 0.249819991 GPPDFS(ph)SDEEREPTPVLGSGAAAAGR ddPTM_HeLa_A485_30min_R1 6 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 GPPDFS(0.993)S(0.007)DEEREPTPVLGSGAAAAGR;GPPDFS(0.94)S(0.06)DEEREPTPVLGSGAAAAGR;GPPDFS(0.896)S(0.104)DEEREPTPVLGSGAAAAGR;GPPDFS(0.926)S(0.074)DEEREPTPVLGSGAAAAGR;GPPDFS(0.892)S(0.108)DEEREPTPVLGSGAAAAGR;GPPDFS(0.595)S(0.405)DEEREPTPVLGSGAAAAGR ;;;;; 330.67 9.05E-124 25286000000 1261184 1977635 2053626 1448486 2224754 1736432 1955630 2047662 1802127 1920016 TRUE FALSE FALSE 1541730.03 2208902.21 2813347.716 1527613.122 2003249.68 1827348.894 1537793.674 1545469.684 2163797.359 1441391.346 1.069612381 1.532479167 1.951827811 1.059818436 1.389802766 1.267767355 1.066881439 1.072206856 1.501186589 1 20.45903066 -5.31531562 24.99964193 1.20290202 1.519427855 0.263453463 0.247954161 423.8637164 196680.2282 0.069995735 0.103820526 4.84E-06 5.31531562 0.316525836 GPPDFS(ph)SDEEREPTPVLGSGAAAAGR ddPTM_HeLa_A486_30min_R1 6 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 GPPDFS(0.994)S(0.006)DEEREPTPVLGSGAAAAGR;GPPDFS(0.94)S(0.06)DEEREPTPVLGSGAAAAGR;GPPDFS(0.933)S(0.067)DEEREPTPVLGSGAAAAGR;GPPDFS(0.899)S(0.101)DEEREPTPVLGSGAAAAGR;GPPDFS(0.604)S(0.396)DEEREPTPVLGSGAAAAGR;GPPDFS(0.944)S(0.056)DEEREPTPVLGSGAAAAGR ;;;;; 302.08 1.05E-90 24828150000 1293906 1674228 1645808 532217 1808717 1277043 1561943 1562399 1145505 1411548 TRUE FALSE FALSE 1203209.871 1541556.076 2283108.934 1239028.073 1581850.848 1119494.419 1171128.341 1206674.855 1244798.296 1058087.193 1.137155689 1.456927261 2.157770124 1.171007532 1.495009918 1.058036073 1.10683538 1.140430451 1.17646098 1 20.01302709 -6.039001503 1.726955972 1.103261856 1.542551347 0.331413997 0.267111761 0.431602955 2.592812063 0.105964638 0.113719238 9.14E-07 6.039001503 0.439289492 GPPDFSS(ph)DEEREPT(ph)PVLGSGAAAAGR ddPTM_HeLa_A485_30min_R1 1 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 2 0 GPPDFS(0.431)S(0.569)DEEREPT(0.999)PVLGS(0.001)GAAAAGR 92.956 0.002851 706000000 130710 162750 149200 117650 149820 135060 128230 190840 130300 223040 TRUE FALSE FALSE 159785.9886 181782.1968 204395.2887 124076.9216 134903.3948 142131.5328 100832.613 144036.1908 156450.0148 167440.2327 0.954286708 1.085654229 1.220705952 0.741022152 0.805680884 0.84884935 0.602200626 0.860224502 0.934363338 1 17.3532867 -5.269520272 24.999523 0.812249075 1.086759492 0.502076487 0.117699718 456.7442099 1413010.266 0.033105486 0.050073621 5.38E-06 5.269520272 0.274510417 GPPDFSS(ph)DEEREPT(ph)PVLGSGAAAAGR ddPTM_HeLa_A486_30min_R1 2 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 2 0 GPPDFS(0.425)S(0.575)DEEREPT(1)PVLGSGAAAAGR;GPPDFS(0.455)S(0.545)DEEREPT(0.999)PVLGS(0.001)GAAAAGR ; 125.68 7.96E-06 998600000 687710 723870 651440 197767 785150 539590 564290 570850 588900 545180 TRUE FALSE FALSE 639505.0803 666507.9049 903695.0142 460411.5706 686669.1658 473020.8719 423098.6735 440879.9166 639946.3262 408663.3795 1.564870043 1.630946002 2.211343271 1.126627914 1.680280642 1.157482896 1.03532319 1.078833922 1.565949773 1 18.64055344 -5.824018197 1.294155625 1.170984784 1.746239481 0.404188588 0.28615193 0.43706248 1.537870595 0.114746434 0.15373593 1.50E-06 5.824018197 0.575254698 GPPDFSSDEEREPT(ph)PVLGSGAAAAGR ddPTM_HeLa_A485_30min_R1 7 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR ;;;;;; 231.95 7.28E-39 12426740000 5811480 6576010 5182360 4448160 5078500 5948890 4721950 9244500 5368040 11311660 TRUE FALSE FALSE 7104223.677 7345017.166 7099530.62 4691151.717 4572866.708 6260364.682 3713066.808 6977271.88 6445356.389 8491871.338 0.836591064 0.864946827 0.836038411 0.552428497 0.538499293 0.737218504 0.437249537 0.821641262 0.759003067 1 23.01765108 -10.0260335 9.366879328 0.999999997 0.704084462 0.274483889 0.141562326 6.52E-10 0 0.146301039 0.035483214 9.42E-11 10.0260335 -0.295915535 GPPDFSSDEEREPT(ph)PVLGSGAAAAGR ddPTM_HeLa_A486_30min_R1 5 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR;GPPDFSSDEEREPT(0.999)PVLGS(0.001)GAAAAGR;GPPDFSSDEEREPT(1)PVLGSGAAAAGR ;;;; 229.16 1.74E-38 9315490000 4584650 4165440 3802810 955878 4823860 3056070 3248070 3033760 3756590 3261400 TRUE FALSE FALSE 4263289.71 3835355.364 5275359.875 2225332.291 4218806.498 2679043.155 2435368.531 2343039.075 4082214.246 2444724.212 1.743873476 1.56882946 2.1578548 0.910259031 1.725677881 1.09584678 0.996173114 0.958406295 1.669805627 1 21.22124029 -5.265431541 24.99992992 1.201858762 1.798050267 0.475281232 0.302801777 304.7198994 1908235.351 0.083057881 0.128481891 5.43E-06 5.265431541 0.596191505 GPPGS(ph)ADKAGK ddPTM_HeLa_A485_30min_R1 2 GPPGSADKAGK 11 1 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 1 0 GPPGS(1)ADKAGK;GPPGS(1)ADKAGK ; 55.841 0.0090428 93949000 399520 271450 173961 781390 405580 367520 528310 636510 329680 959940 TRUE FALSE FALSE 488391.8457 303193.7162 238316.413 824075.3571 365199.0311 386762.7789 415432.2526 480404.9245 395843.752 720644.6244 0.677715242 0.420725703 0.330698939 1.143525296 0.506767162 0.536690021 0.576473117 0.666632218 0.549291202 1 19.45892846 -10.57331436 2.425410831 1.036881919 0.600207898 0.251561882 0.206490648 6401139.103 5423385.417 1515367.023 0.053550535 2.67E-11 10.57331436 -0.43667402 GPPGS(ph)ADKAGK ddPTM_HeLa_A486_30min_R1 2 GPPGSADKAGK 11 1 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 1 0 GPPGS(1)ADKAGK;GPPGS(1)ADKAGK ; 86.467 0.001598 311260000 389820 248420 224500 316720 314080 684280 611590 510770 360770 693620 TRUE FALSE FALSE 362495.631 228734.2945 311432.4123 737340.1661 274685.1577 599860.4908 458563.7133 394478.821 392041.8341 519933.0373 0.697196764 0.439930295 0.598985619 1.418144479 0.528308721 1.153726437 0.88196687 0.75871082 0.754023703 1 18.9879663 -5.034845042 24.99891335 0.916326413 0.556286764 0.316494117 0.234840163 647.530046 464557.7207 0.060522625 0.104895603 9.23E-06 5.034845042 -0.360039649 GPPPAPRPTS(ph)R ddPTM_HeLa_A486_30min_R1 2 GPPPAPRPTSR 11 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 GPPPAPRPT(0.183)S(0.817)R;GPPPAPRPT(0.134)S(0.866)R ; 52.576 0.021687 873100000 115819 128543 136153 53475 159539 114716 132592 134785 128091 132355 TRUE FALSE FALSE 107700.6862 118356.7845 188875.0879 124492.5025 139528.131 100563.5063 99416.07918 104097.3978 139194.031 99212.44651 1.085556198 1.192963068 1.90374388 1.254807303 1.406357124 1.013617845 1.002052491 1.049237283 1.402989604 1 16.5982335 -6.254864138 24.43046019 1.090936337 1.38232207 0.260670088 0.231064752 549.7851985 2042740.109 0.079578537 0.077782765 5.56E-07 6.254864138 0.291385733 GPPQS(ph)PVFEGVYNNSR ddPTM_HeLa_A485_30min_R1 6 GPPQSPVFEGVYNNSR 16 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR ;;;;; 233.63 2.18E-35 7816220000 2101376 2238880 2433400 2425950 2516610 2247870 2724100 2353950 2217520 3196140 TRUE FALSE FALSE 2568819.842 2500697.54 3333615.922 2558473.506 2266047.472 2365564.997 2142073.781 1776640.072 2662555.924 2399401.119 1.070608754 1.042217377 1.389353325 1.066296705 0.944422112 0.985898097 0.892753514 0.740451464 1.109675203 1 21.19424293 -5.629263374 3.953898278 0.931943329 1.164625708 0.389925003 0.123770392 0.220084804 6.398309782 0.037796748 0.049755743 2.35E-06 5.629263374 0.232682379 GPPQS(ph)PVFEGVYNNSR ddPTM_HeLa_A486_30min_R1 6 GPPQSPVFEGVYNNSR 16 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR ;;;;; 258.9 1.26E-50 7521180000 2580952 2808537 2525662 917915 2967900 2562208 2724486 2821189 2499154 2925709 TRUE FALSE FALSE 2400040.593 2585978.3 3503665.966 2136952.509 2595638.307 2246108.828 2042790.786 2178865.851 2715782.681 2193092.423 1.094363633 1.179146976 1.597591569 0.974401483 1.183551719 1.024174268 0.93146589 0.993513008 1.238334806 1 21.06453518 GPPRGPGS(ph)R ddPTM_HeLa_A485_30min_R1 2 GPPRGPGSR 9 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GPPRGPGS(1)R;GPPRGPGS(1)R ; 73.781 0.0060137 239520000 48267 120662 98357 46388 95154 105610 115069 135986 84301 61299 TRUE FALSE FALSE 59003.82763 134772.3713 134743.3473 48922.05898 85680.13365 111139.5763 90483.56812 102635.2203 101219.4374 46018.28742 1.28218217 2.928669858 2.928039152 1.063100383 1.861871409 2.415117609 1.966252401 2.230313774 2.199548117 1 15.48991967 -10.20345723 4.623043277 0.999796753 2.118195564 0.245325537 0.576281154 198695525.7 209.2250728 491345.4188 0.140755828 6.26E-11 10.20345723 1.118398811 GPPRGPGS(ph)R ddPTM_HeLa_A486_30min_R1 3 GPPRGPGSR 9 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GPPRGPGS(1)R;GPPRGPGS(1)R;GPPRGPGS(1)R ;; 80.979 0.003664 210561000 77260 64821 73300 19524.1 94404 50267 70329 75583 53429 72753 TRUE FALSE FALSE 71844.47297 59684.34789 101683.723 45453.09149 82562.97004 44065.56862 52731.94034 58374.40087 58060.26874 54535.17526 1.317396939 1.094419292 1.864552971 0.833463747 1.513939758 0.808021032 0.966934462 1.07039907 1.064638895 1 15.73489945 -6.263750263 24.98458148 0.985457123 1.314653006 0.305088542 0.258395397 270.9838762 2929781.231 0.085155843 0.078663185 5.45E-07 6.263750263 0.329195883 GPPS(ph)PPAPVMHS(ph)PSR ddPTM_HeLa_A485_30min_R1 13 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(1)PPAPVMHS(0.976)PS(0.024)R;GPPS(1)PPAPVMHS(0.999)PS(0.001)R;GPPS(1)PPAPVMHS(0.988)PS(0.012)R;GPPS(1)PPAPVMHS(0.862)PS(0.138)R;GPPS(1)PPAPVMHS(0.724)PS(0.276)R;GPPS(1)PPAPVMHS(0.863)PS(0.137)R;GPPS(1)PPAPVMHS(0.846)PS(0.154)R;GPPS(1)PPAPVMHS(0.902)PS(0.098)R;GPPS(1)PPAPVMHS(0.988)PS(0.012)R;GPPS(1)PPAPVMHS(0.954)PS(0.046)R;GPPS(1)PPAPVMHS(0.985)PS(0.015)R;GPPS(1)PPAPVMHS(0.992)PS(0.008)R;GPPS(1)PPAPVMHS(0.974)PS(0.026)R ;;;;;;;;;;;; 137.98 3.37E-06 30764520000 2304629 3354632 3619364 2508748 3865740 3108190 3520480 3869300 3124060 3326910 TRUE FALSE FALSE 2817285.77 3746927.031 4958317.358 2645794.551 3480853.352 3270930.022 2768300.688 2920348.108 3751030.186 2497572.564 1.128009576 1.500227495 1.985254574 1.059346418 1.393694582 1.309643639 1.1083965 1.169274579 1.501870352 1 21.25209516 -5.316964278 24.99994694 1.23365368 1.534076293 0.266978944 0.240361675 404.2291896 182002.3028 0.067594229 0.100258488 4.82E-06 5.316964278 0.300422613 GPPS(ph)PPAPVMHS(ph)PSR ddPTM_HeLa_A486_30min_R1 12 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(1)PPAPVMHS(0.989)PS(0.011)R;GPPS(1)PPAPVMHS(0.99)PS(0.01)R;GPPS(1)PPAPVMHS(0.832)PS(0.168)R;GPPS(1)PPAPVMHS(0.794)PS(0.206)R;GPPS(1)PPAPVMHS(0.999)PS(0.001)R;GPPS(1)PPAPVMHS(0.999)PS(0.001)R;GPPS(1)PPAPVMHS(0.999)PS(0.001)R;GPPS(1)PPAPVMHS(0.997)PS(0.003)R;GPPS(1)PPAPVMHS(0.5)PS(0.5)R;GPPS(1)PPAPVMHS(0.968)PS(0.032)R;GPPS(1)PPAPVMHS(0.997)PS(0.003)R;GPPS(1)PPAPVMHS(0.947)PS(0.053)R ;;;;;;;;;;; 146.72 8.30E-08 19210190000 3313036 3805771 3593628 978910 4398894 3281524 3587588 3763696 3208893 3377726 TRUE FALSE FALSE 3080809.285 3504187.846 4985177.002 2278951.951 3847143.696 2876682.933 2689935.537 2906784.582 3487042.429 2531921.424 1.216787083 1.384003394 1.968930376 0.900087945 1.519456196 1.136165959 1.062408774 1.148054815 1.377231693 1 21.2718012 -5.282787626 24.98700944 1.179012604 1.50931675 0.31228204 0.24371084 1003.033584 1173996.359 0.067758272 0.100608549 5.21E-06 5.282787626 0.330304146 GPPS(ph)PPAPVMHS(ph)PSRK ddPTM_HeLa_A485_30min_R1 10 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(1)PPAPVMHS(0.962)PS(0.038)RK;GPPS(1)PPAPVMHS(0.716)PS(0.284)RK;GPPS(1)PPAPVMHS(0.962)PS(0.038)RK;GPPS(0.999)PPAPVMHS(0.5)PS(0.5)RK;GPPS(1)PPAPVMHS(0.843)PS(0.157)RK;GPPS(1)PPAPVMHS(0.999)PS(0.001)RK;GPPS(1)PPAPVMHS(0.948)PS(0.052)RK;GPPS(1)PPAPVMHS(0.902)PS(0.098)RK;GPPS(1)PPAPVMHS(0.981)PS(0.019)RK;GPPS(1)PPAPVMHS(0.861)PS(0.139)RK ;;;;;;;;; 155.49 3.21E-08 11497000000 4932087 5843700 5006623 5220540 6874590 6289850 7777650 8535600 5586330 7112140 TRUE FALSE FALSE 6029212.738 6527069.882 6858781.191 5505724.881 6190131.681 6619176.82 6115891.54 6442230.717 6707455.19 5339214.387 1.129232187 1.22247758 1.284604942 1.031186329 1.159371254 1.239728608 1.145466561 1.206587758 1.25626257 1 22.34819605 -10.33751225 4.77906661 0.999873303 1.185711071 0.389549637 0.069888615 9.50E-05 1.32E-05 0.068141032 0.016515393 4.60E-11 10.33751225 0.185837767 GPPS(ph)PPAPVMHS(ph)PSRK ddPTM_HeLa_A486_30min_R1 8 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(1)PPAPVMHS(0.892)PS(0.108)RK;GPPS(1)PPAPVMHS(0.744)PS(0.256)RK;GPPS(1)PPAPVMHS(0.98)PS(0.02)RK;GPPS(1)PPAPVMHS(0.968)PS(0.032)RK;GPPS(1)PPAPVMHS(0.937)PS(0.063)RK;GPPS(1)PPAPVMHS(0.5)PS(0.5)RK;GPPS(1)PPAPVMHS(0.87)PS(0.13)RK;GPPS(1)PPAPVMHS(0.668)PS(0.332)RK ;;;;;;; 98.562 0.00026315 8647570000 3979040 4163940 2989380 1170681 4375510 3890800 4636160 4768720 3214570 4318710 TRUE FALSE FALSE 3700129.844 3833974.23 4146947.994 2725404.531 3826692.736 3410792.655 3476143.732 3682986.556 3493211.516 3237276.906 1.142976011 1.184320755 1.28099885 0.841881807 1.18207149 1.053599292 1.073786343 1.137680422 1.079058609 1 21.62634934 -5.161888558 21.19024919 1.064317914 1.200918886 0.357557922 0.09128976 14.22684558 3022.668735 0.023781022 0.041189953 6.89E-06 5.161888558 0.136600972 GPPS(ph)PPAPVMHSPS(ph)R ddPTM_HeLa_A486_30min_R1 1 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(1)PPAPVMHS(0.271)PS(0.729)R 139.27 5.17E-05 0 208100 239150 208770 47692 285310 195540 217070 212780 180910 196010 TRUE FALSE FALSE 193513.2646 220198.883 289611.3351 111029.3862 249523.7594 171416.2629 162756.7901 164334.639 196591.4245 146927.8202 1.31706347 1.498687469 1.971112991 0.755672997 1.698274425 1.166669884 1.107732966 1.118471905 1.338013619 1 17.16474806 -5.874606526 0.822389381 1.140922116 1.527167744 0.179413741 0.303718691 1.138724778 1.694388943 0.168057749 0.246188061 1.33E-06 5.874606526 0.386245628 GPPS(ph)PPAPVMHSPS(ph)RK ddPTM_HeLa_A485_30min_R1 1 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(0.998)PPAPVMHS(0.251)PS(0.751)RK 52.162 0.020131 134900000 231510 289610 230340 270610 371990 308520 386040 406990 274980 339850 TRUE FALSE FALSE 283008.6008 323477.3702 315552.3512 285392.7391 334953.3695 324673.6301 303559.4003 307175.0644 330165.9637 255131.6495 1.109264967 1.267884133 1.236821664 1.118609705 1.312864829 1.272572928 1.189814752 1.20398651 1.294100377 1 17.96088235 -10.42127517 5.915077964 0.999915415 1.224126886 0.50905644 0.065653392 7.12E-05 6.97E-06 0.061844215 0.014993787 3.79E-11 10.42127517 0.224211471 GPPS(ph)PPAPVMHSPSR ddPTM_HeLa_A485_30min_R1 4 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 0 GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR ;;; 127.97 1.70E-05 1655120000 553410 771750 862560 603280 988240 757080 889590 949640 835180 830180 TRUE FALSE FALSE 676514.1453 861999.4492 1181656.838 636235.6588 889847.3557 796719.5381 699521.8292 716739.301 1002792.965 623231.4043 1.085494313 1.383112987 1.896016199 1.020865852 1.427796079 1.278368729 1.122411073 1.150037203 1.609021879 1 19.24940841 GPPS(ph)PPAPVMHSPSR ddPTM_HeLa_A486_30min_R1 4 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 0 GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR ;;; 100.97 0.00011157 1589740000 785550 913130 834790 190545 1130020 873940 953920 977160 844870 859360 TRUE FALSE FALSE 730487.0016 840770.2532 1158043.044 443598.3896 988282.3546 766122.1684 715239.1265 754681.9993 918104.0119 644170.6625 1.133996073 1.305197989 1.797727081 0.688634884 1.534193362 1.189315523 1.110325521 1.171555992 1.425249651 1 19.29708343 -5.244911558 24.91273938 1.181800585 1.401596026 0.156190753 0.26510458 1684.180664 2538598.241 0.069602622 0.120112187 5.69E-06 5.244911558 0.219795442 GPPS(ph)PPAPVMHSPSRK ddPTM_HeLa_A485_30min_R1 1 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 0 GPPS(1)PPAPVMHSPSRK 59.512 0.023515 330050000 144020 250180 187940 121400 254310 252410 284580 370830 207580 195840 TRUE FALSE FALSE 176056.7521 279436.3747 257466.8268 128031.7746 228990.0035 265625.7973 223777.1582 279883.3611 249239.402 147020.6922 1.197496417 1.900660176 1.751228504 0.870841871 1.557535882 1.806723893 1.522079341 1.903700472 1.695267505 1 17.16565969 -5.996420566 24.99814969 1.642964114 1.45255929 0.029262935 0.34914213 348.9718661 2437120.354 0.108478862 0.122441426 1.01E-06 5.996420566 -0.190404823 GPPS(ph)PPAPVMHSPSRK ddPTM_HeLa_A486_30min_R1 1 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 0 GPPS(1)PPAPVMHSPSRK 73.809 0.0058505 161970000 166010 126790 116580 35575 196900 133090 188220 185320 110530 185220 TRUE FALSE FALSE 154373.5563 116742.6986 161722.8981 82820.39786 172202.966 116670.709 141125.3652 143126.6815 120110.8294 138839.7064 1.111883338 0.840845185 1.164817344 0.5965181 1.240300563 0.840326676 1.016462573 1.030877155 0.865104317 1 17.08306069 GPPVT(ph)PSSEKR ddPTM_HeLa_A485_30min_R1 2 GPPVTPSSEKR 11 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 GPPVT(0.978)PS(0.018)S(0.004)EKR;GPPVT(0.877)PS(0.09)S(0.033)EKR ; 75.589 0.0086527 1059330000 808040 970910 861950 836230 1126320 1141980 1310990 1492570 867340 1202800 TRUE FALSE FALSE 987785.7103 1084449.479 1180821.174 881911.1275 1014179.626 1201772.307 1030886.277 1126514.867 1041407.182 902964.0959 1.093936863 1.200988482 1.30771664 0.976684601 1.123167168 1.330919261 1.141669178 1.247574375 1.153320699 1 19.7843091 -8.034768644 21.98777699 0.999999996 1.179687815 0.223695827 0.098756349 1622.895814 1026323.882 0.095799535 0.024735334 9.23E-09 8.034768644 0.17968782 GPQGPSGPPGVPGS(ph)PGSSRPGLR ddPTM_HeLa_A485_30min_R1 2 GPQGPSGPPGVPGSPGSSRPGLR 23 1 Q01955-5;Q01955-4;Q01955-3;Q01955-2;Q01955 Q01955-5 COL4A3 Collagen alpha-3(IV) chain;Tumstatin 1 0 GPQGPSGPPGVPGS(0.995)PGS(0.004)S(0.001)RPGLR;GPQGPSGPPGVPGS(0.996)PGS(0.003)S(0.001)RPGLR ; 204.89 3.40E-29 770050000 162485 221715 247240 154447 246840 209887 246730 282460 209140 211509 TRUE FALSE FALSE 198629.2277 247642.6406 338704.3645 162884.0485 222263.7429 220876.3588 194014.1199 213186.2421 251112.4797 158783.6988 1.250942188 1.559622571 2.13311799 1.025823493 1.399789428 1.391051855 1.221876813 1.342620456 1.581475186 1 17.27670328 -5.288170774 24.99996058 1.301802124 1.639067394 0.294225382 0.259253908 977.7009447 914371.5636 0.072631037 0.107764259 5.15E-06 5.288170774 0.33726527 GPQGPSGPPGVPGS(ph)PGSSRPGLR ddPTM_HeLa_A486_30min_R1 2 GPQGPSGPPGVPGSPGSSRPGLR 23 1 Q01955-5;Q01955-4;Q01955-3;Q01955-2;Q01955 Q01955-5 COL4A3 Collagen alpha-3(IV) chain;Tumstatin 1 0 GPQGPSGPPGVPGS(0.996)PGS(0.003)S(0.001)RPGLR;GPQGPSGPPGVPGS(0.894)PGS(0.086)S(0.021)RPGLR ; 198.15 5.58E-29 652320000 156960 168957 181501 64238 226210 137843 160350 179736 140001 172965 TRUE FALSE FALSE 145957.9145 155568.232 251783.048 149549.3104 197836.6325 120837.3321 120228.734 138814.0364 152136.3994 129653.4382 1.125754292 1.199877413 1.941969696 1.153454259 1.525888054 0.932002528 0.92730849 1.070654495 1.173408137 1 16.98430094 -6.265347304 24.9602537 1.019255238 1.396451809 0.391366474 0.229815797 361.6273812 2309736.508 0.080431399 0.073602718 5.43E-07 6.265347304 0.377196571 GPQPPTVS(ph)PIR ddPTM_HeLa_A485_30min_R1 5 GPQPPTVSPIR 11 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GPQPPTVS(1)PIR;GPQPPTVS(1)PIR;GPQPPT(0.018)VS(0.982)PIR;GPQPPT(0.009)VS(0.991)PIR;GPQPPT(0.004)VS(0.996)PIR ;;;; 166.7 5.01E-08 7463190000 2528080 3385670 3706530 2731000 4125980 2953350 3380480 3526680 3380600 4167460 TRUE FALSE FALSE 3090442.674 3781594.655 5077729.689 2880187.615 3715182.944 3107982.839 2658212.832 2661756.2 4059055.411 3128588.918 0.987807205 1.208722128 1.623009549 0.920602767 1.187494759 0.993413619 0.84965232 0.850784897 1.297407719 1 21.57708068 GPQPPTVS(ph)PIR ddPTM_HeLa_A486_30min_R1 4 GPQPPTVSPIR 11 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GPQPPT(0.001)VS(0.999)PIR;GPQPPT(0.038)VS(0.962)PIR;GPQPPTVS(1)PIR;GPQPPTVS(1)PIR ;;; 131.79 3.75E-05 7767100000 1852090 2159500 2100440 482176 2645510 1916610 2064540 2147650 1931540 1816600 TRUE FALSE FALSE 1722268.055 1988373.355 2913786.62 1122530.096 2313685.467 1680158.145 1547970.256 1658676.978 2098967.442 1361711.536 1.264781864 1.460201594 2.139797265 0.824352344 1.699101026 1.233857613 1.136782802 1.21808249 1.541418566 1 20.37698969 -5.271621454 24.99984339 1.260358715 1.605454404 0.240445511 0.311418839 1071.800705 2631569.211 0.085604671 0.128628528 5.35E-06 5.271621454 0.345095688 GPRIS(ph)APNVDFNLEGPK ddPTM_HeLa_A485_30min_R1 2 GPRISAPNVDFNLEGPK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPRIS(1)APNVDFNLEGPK;GPRIS(1)APNVDFNLEGPK ; 266.46 2.94E-52 1326190000 687990 946340 720890 790250 1563240 1358710 1913060 2651350 1022000 1537510 TRUE FALSE FALSE 841031.002 1057006.231 987577.2097 833419.3565 1407598.337 1429849.955 1504319.103 2001102.255 1227106.026 1154237.053 0.728646685 0.915761826 0.855610386 0.722052159 1.219505416 1.23878362 1.303301691 1.73370128 1.063131722 1 20.13850812 -5.852728706 4.8168248 1.306625965 0.817612628 0.567360873 0.192600414 0.146974783 5.843849044 0.059800445 0.068916855 1.40E-06 5.852728706 -0.489013337 GPRPGRGDMEQNDSDNRR ddPTM_HeLa_A485_30min_R1 4 GPRPGRGDMEQNDSDNRR 18 3 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 0 ;;; ;;; 92.977 0.00024482 300098000 74176.7 242459 174909 41924.4 197423 251554 251981 430409 130943 64138.3 FALSE FALSE TRUE 90677.05101 270812.4709 239615.1177 44214.62381 177766.8729 264724.9785 198143.2009 324850.5179 157222.059 48149.80219 1.883227903 5.624373489 4.976450718 0.91827218 3.691954377 5.497945296 4.115140496 6.746663603 3.265269054 1 15.55524225 -6.022379206 24.42829446 4.495931206 3.463626711 0.016466413 1.894329635 1818.149232 1984620.408 0.61152435 0.616648503 9.50E-07 6.022379206 -1.032304494 GPRPGRGDMEQNDSDNRR ddPTM_HeLa_A486_30min_R1 2 GPRPGRGDMEQNDSDNRR 18 3 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 0 ; ; 73.279 0.0021205 70503000 46325 29365 37176 14077.9 67928 25181.6 39151.1 50405 18892.4 50043 FALSE FALSE TRUE 43077.85672 27038.01045 51571.54281 32774.06266 59407.83684 22074.95022 29355.08068 38928.88183 20530.00844 37511.90707 1.148378211 0.720784747 1.374804611 0.873697586 1.583706121 0.588478484 0.782553674 1.037773999 0.547293114 1 15.19506099 -6.301558491 24.99996043 0.793039133 1.115189588 0.298925853 0.26588667 713.3033309 444488.1239 0.089348857 0.078799296 4.99E-07 6.301558491 0.322150455 GPRT(ph)PPITTK ddPTM_HeLa_A485_30min_R1 5 GPRTPPITTK 10 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GPRT(1)PPITTK;GPRT(1)PPITTK;GPRT(1)PPITTK;GPRT(1)PPITTK;GPRT(1)PPITTK ;;;; 110.86 0.00083886 6607580000 2264990 3036370 2723840 2632300 3667640 3429030 3989330 4522830 3012310 3680700 TRUE FALSE FALSE 2768829.211 3391447.059 3731501.764 2776095.884 3302476.884 3608568.709 3136977.056 3413598.851 3616852.986 2763169.228 1.002048366 1.227375806 1.350442719 1.004678199 1.195177208 1.305952843 1.135282278 1.235392612 1.30895095 1 21.39789249 GPRT(ph)PPITTK ddPTM_HeLa_A486_30min_R1 4 GPRTPPITTK 10 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GPRT(1)PPITTK;GPRT(1)PPITTK;GPRT(1)PPITTK;GPRT(1)PPITTK ;;; 89.403 0.0039658 5989700000 4754880 5035450 4028870 1912410 6055100 4956710 5959500 6340300 4180650 5580800 TRUE FALSE FALSE 4421587.466 4636422.603 5588956.361 4452187.128 5295612.896 4345201.516 4468370.067 4896752.098 4543032.108 4183331.355 1.056953679 1.108308716 1.336006136 1.064268343 1.26588416 1.038694081 1.068136776 1.170538904 1.085984284 1 21.99622085 -6.288562145 24.99468632 1.083046116 1.166824823 0.208340797 0.090110146 1378.219994 1270079.65 0.031408164 0.027707019 5.15E-07 6.288562145 0.083778707 GPRT(ph)PS(ph)PPPPIPEDIALGK ddPTM_HeLa_A485_30min_R1 3 GPRTPSPPPPIPEDIALGK 19 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 GPRT(1)PS(1)PPPPIPEDIALGK;GPRT(1)PS(1)PPPPIPEDIALGK;GPRT(1)PS(1)PPPPIPEDIALGK ;; 138.11 1.01E-06 567990000 522732 460903 638014 902067 1115430 584068 806233 710939 738772 1226801 TRUE FALSE FALSE 639011.93 514801.5965 874041.9286 951344.6361 1004373.873 614648.8973 633974.7332 536580.0955 887036.764 920982.0883 0.693837522 0.558970259 0.949032494 1.032967577 1.090546587 0.667384203 0.688368147 0.582617298 0.963142254 1 19.81281357 -12.02719133 0.997126897 3.099854453 0.801452718 0.094694426 0.182782406 65227.4442 1778.318732 305655.1262 0.061569374 9.39E-13 12.02719133 -2.298401735 GPRT(ph)PS(ph)PPPPIPEDIALGK ddPTM_HeLa_A486_30min_R1 3 GPRTPSPPPPIPEDIALGK 19 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 GPRT(1)PS(1)PPPPIPEDIALGK;GPRT(1)PS(1)PPPPIPEDIALGK;GPRT(1)PS(1)PPPPIPEDIALGK ;; 154.79 6.86E-09 1059470000 435519 725320 602010 346815 1089780 838990 987450 992820 623670 641060 TRUE FALSE FALSE 404991.3671 667843.0016 835124.3944 807402.8471 953089.6306 735483.944 740379.5658 766776.5591 677730.2178 480534.4034 0.842793699 1.389792275 1.737907606 1.680218609 1.983395203 1.530554189 1.540742058 1.595674636 1.410367734 1 18.8742802 -8.141257976 3.051931335 1.000143418 1.558341042 0.249955734 0.277713562 0.869295184 15.13755274 0.280895629 0.074875631 7.22E-09 8.141257976 0.558197624 GPS(ph)PAPAS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 GPSPAPASSPK 11 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 GPS(1)PAPAS(0.594)S(0.406)PK 107.65 0.0013598 1005000000 1783400 1503800 1138900 2844400 1839600 1631100 2206500 1894000 1352200 3758500 TRUE FALSE FALSE 2180111.177 1679656.329 1560226.504 2999782.37 1656442.965 1716501.874 1735063.25 1429493.53 1623574.137 2821575.12 0.7726575 0.59529031 0.552962951 1.063158783 0.587063216 0.608348813 0.614927186 0.50662962 0.57541411 1 21.42806933 -9.884369067 4.180860148 1.000007216 0.651698187 0.319245003 0.152031108 190194371.2 395746396.1 21484.12956 0.038898551 1.31E-10 9.884369067 -0.348309029 GPS(ph)PAPAS(ph)SPKR ddPTM_HeLa_A485_30min_R1 3 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 GPS(1)PAPAS(0.554)S(0.446)PKR;GPS(1)PAPAS(0.5)S(0.5)PKR;GPS(0.999)PAPAS(0.611)S(0.39)PKR ;; 88.507 0.0010409 2245510000 3194330 2760540 2683810 4675000 3890220 3144450 4428330 3365480 3187420 6194030 TRUE FALSE FALSE 3904897.688 3083361.139 3676663.002 4930383.412 3502896.037 3309088.54 3482181.119 2540090.753 3827105.957 4649972.314 0.839767944 0.663092365 0.790684923 1.060303821 0.753315461 0.711636181 0.748860613 0.546259328 0.82303844 1 22.1487907 -5.973383958 24.99281107 0.736080655 0.83305894 0.043416784 0.140134761 553.1864452 519446.8508 0.04353713 0.049365209 1.06E-06 5.973383958 0.096978285 GPS(ph)PAPAS(ph)SPKR ddPTM_HeLa_A486_30min_R1 4 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 GPS(0.995)PAPAS(0.851)S(0.155)PKR;GPS(1)PAPAS(0.558)S(0.442)PKR;GPS(0.999)PAPAS(0.698)S(0.303)PKR;GPS(1)PAPAS(0.5)S(0.5)PKR ;;; 85.536 0.000912 722830000 5748920 6106730 3892420 2859040 6191060 6391740 7502310 7243530 5012170 7957820 TRUE FALSE FALSE 5345950.395 5622810.474 5399669.267 6655989.608 5414519.525 5603192.105 5625152.687 5594336.344 5446628.931 5965130.075 0.896200138 0.942613221 0.90520562 1.11581634 0.907695131 0.939324379 0.943005872 0.937839791 0.913077982 1 22.50812217 -5.403733371 0.003505504 1.892882534 2.09E-05 0.031205857 0.061004484 232392.6172 195.6810981 51969.79941 53695.52414 3.95E-06 5.403733371 -1.892861658 GPS(ph)PAPASS(ph)PK ddPTM_HeLa_A486_30min_R1 3 GPSPAPASSPK 11 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 GPS(1)PAPAS(0.033)S(0.967)PK;GPS(1)PAPAS(0.003)S(0.997)PK;GPS(1)PAPAS(0.186)S(0.814)PK ;; 161.2 1.53E-07 2040800000 3277370 3537460 1884830 2065820 2926610 3848490 4550670 4101320 2757660 6122640 TRUE FALSE FALSE 3047643.287 3257138.786 2614686.653 4809333.361 2559527.284 3373702.432 3412044.234 3167538.967 2996696.189 4589491.092 0.664048198 0.709694979 0.569711674 1.04790123 0.55769305 0.735092925 0.743447185 0.690172157 0.652947381 1 22.12990276 -10.41637704 3.257231068 1.003608393 0.710759986 0.317969025 0.128295814 105025365.7 131614173.4 3503535.183 0.030124716 3.83E-11 10.41637704 -0.292848406 GPS(ph)PAPASS(ph)PKR ddPTM_HeLa_A486_30min_R1 1 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 GPS(1)PAPAS(0.186)S(0.814)PKR 107.82 0.00021987 1335800000 2344600 2412400 1642000 1132400 2331400 2637900 3237600 2860800 2125100 3472900 TRUE FALSE FALSE 2180255.648 2221232.638 2277826.374 2636284.428 2038974.073 2312462.718 2427518.236 2209458.291 2309305.379 2603263.235 0.837508715 0.85324934 0.874988877 1.012684539 0.783237763 0.888293849 0.9324905 0.848726422 0.88708101 1 21.31188977 -11.12893687 1.66264695 1.195153108 0.880836703 0.280198288 0.057771755 512214.0925 104964.1778 376656.0322 0.015609861 7.43E-12 11.12893687 -0.314316405 GPS(ph)PEPPPSPLQVPTYPQLTLEVPQAPEVLR ddPTM_HeLa_A485_30min_R1 1 GPSPEPPPSPLQVPTYPQLTLEVPQAPEVLR 31 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 GPS(0.838)PEPPPS(0.161)PLQVPT(0.001)YPQLTLEVPQAPEVLR 61.499 0.0086145 24254000 7195.3 8789.3 12970 7103 9119.9 9859.5 10177 11311 5775 11250 TRUE FALSE FALSE 8795.869662 9817.132178 17768.14273 7491.018904 8211.890734 10375.72817 8002.600812 8536.959515 6933.989529 8445.582041 1.041475841 1.162398533 2.103838746 0.886974855 0.972329757 1.228539149 0.947548763 1.010819559 0.821019735 1 13.04398114 GPS(ph)PPGAK ddPTM_HeLa_A485_30min_R1 2 GPSPPGAK 8 0 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 GPS(1)PPGAK;GPS(1)PPGAK ; 60.167 0.033881 451420000 700820 538840 616310 1335100 1080100 548040 837690 631340 766070 1753600 TRUE FALSE FALSE 856714.9912 601852.6507 844308.7158 1408033.132 972561.4515 576734.527 658710.6882 476502.8751 919813.2222 1316459.793 0.650771863 0.45717511 0.641347894 1.069560301 0.738770342 0.438095056 0.500365216 0.361957788 0.6987021 1 20.32823203 -8.021702777 24.18990565 1.000000013 0.608753268 0.280552855 0.188899888 1718.862887 1915843.155 0.201613149 0.052056291 9.51E-09 8.021702777 -0.391246744 GPS(ph)PPGAK ddPTM_HeLa_A486_30min_R1 4 GPSPPGAK 8 0 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 GPS(1)PPGAK;GPS(1)PPGAK;GPS(1)PPGAK;GPS(1)PPGAK ;;; 79.148 0.0098236 1196140000 2117310 3833820 2564710 1579180 4100820 4399550 4718080 4682900 3265100 3682150 TRUE FALSE FALSE 1968897.503 3530014.141 3557834.397 3676410.847 3586456.917 3856778.252 3537566.481 3616705.897 3548121.497 2760115.673 0.713338764 1.27893703 1.28901641 1.331977092 1.299386454 1.397324862 1.28167327 1.31034577 1.285497391 1 21.3962973 -4.261275383 6.159302372 1.292547907 0.699090377 0.740274626 0.099328405 0.05573376 11.0300874 0.022459613 0.138539331 5.48E-05 4.261275383 -0.59345753 GPS(ph)PPGAKR ddPTM_HeLa_A486_30min_R1 1 GPSPPGAKR 9 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 GPS(1)PPGAKR 48.004 0.033251 34073000 58124 51604 48133 34887 88014 62489 81418 74939 43913 75096 TRUE FALSE FALSE 54049.80775 47514.7111 66771.38665 81218.69909 76974.46342 54779.74252 61046.35525 57877.02561 47719.4142 56291.47281 0.960177538 0.844083637 1.186172316 1.442824198 1.367426709 0.973144595 1.084468965 1.028166838 0.847720122 1 15.78062877 -7.093841753 1.497382767 0.939651684 1.146723428 0.172585799 0.174871945 0.856933249 3.606951142 0.145973018 0.064339949 8.06E-08 7.093841753 0.207071744 GPS(ph)PPLNGNILS(ph)CSPDRR ddPTM_HeLa_A486_30min_R1 1 GPSPPLNGNILSCSPDRR 18 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 0 GPS(1)PPLNGNILS(0.794)CS(0.206)PDRR 66.075 0.0046527 89570000 58689 84493 63533 26237 74123 69294 64857 66136 54668 78487 TRUE FALSE FALSE 54575.20417 77797.46696 88134.67907 61081.06194 64825.80217 60745.21081 48629.09261 51078.27654 59406.66626 58833.34434 0.927623693 1.322336302 1.498039591 1.038204825 1.101854788 1.032496308 0.82655666 0.868185841 1.009744847 1 15.84434643 -5.972057523 1.46497326 0.924109594 1.241387017 0.389230239 0.152056323 0.39069414 1.724864207 0.063430452 0.072630596 1.07E-06 5.972057523 0.317277423 GPS(ph)PRPPATAYDAPASAFGSSLLGSGGSAFAPPLR ddPTM_HeLa_A485_30min_R1 1 GPSPRPPATAYDAPASAFGSSLLGSGGSAFAPPLR 35 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 GPS(0.54)PRPPAT(0.142)AY(0.133)DAPAS(0.162)AFGS(0.011)S(0.011)LLGSGGSAFAPPLR 48.388 0.013231 149260000 13812 8929.5 10723 10872 15079 10849 16677 10345 14248 15721 TRUE FALSE FALSE 16884.43175 9973.727349 14689.88392 11465.90983 13577.68181 11417.03686 13113.82271 7807.87253 17107.44291 11802.04402 1.430636228 0.845084744 1.244689809 0.971518985 1.150451717 0.967377926 1.111148432 0.661569514 1.449532206 1 13.52674912 -4.241501151 24.08534636 1.040964894 1.430636831 0.242071816 0.204834078 3917.642508 4732387.636 0.046236182 1.704969596 5.73E-05 4.241501151 0.389671938 GPS(ph)PRPPATAYDAPASAFGSSLLGSGGSAFAPPLR ddPTM_HeLa_A486_30min_R1 2 GPSPRPPATAYDAPASAFGSSLLGSGGSAFAPPLR 35 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 GPS(0.961)PRPPAT(0.039)AYDAPASAFGSSLLGSGGSAFAPPLR;GPS(0.998)PRPPAT(0.002)AYDAPAS(0.001)AFGSSLLGSGGSAFAPPLR ; 246.67 8.65E-52 408960000 69252 95893 99692 29463 103103 73044 87933 70329 81844 70247 TRUE FALSE FALSE 64397.79242 88294.08944 138295.4122 68591.35298 90170.86034 64032.57394 65931.23334 54316.62197 88938.30382 52656.69397 1.22297447 1.676787561 2.626359572 1.302614118 1.7124292 1.216038629 1.252095952 1.031523589 1.689021796 1 15.68432932 -6.03398116 1.68511058 1.235958531 1.789484636 0.252212285 0.396348811 0.513266488 2.942418731 0.156984884 0.169284686 9.25E-07 6.03398116 0.553526105 GPS(ph)PSPVGS(ph)PASVAQSR ddPTM_HeLa_A485_30min_R1 2 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 2 0 GPS(0.987)PS(0.013)PVGS(0.996)PAS(0.004)VAQSR;GPS(0.985)PS(0.015)PVGS(1)PASVAQSR ; 227.99 3.66E-34 118400000 284150 311860 348430 302100 393970 271540 294110 281400 280760 337920 TRUE FALSE FALSE 347358.1872 348329.3142 477328.7564 318602.958 354744.9635 285757.4145 231270.9958 212386.2088 337105.9567 253682.763 1.369262078 1.373090194 1.881597121 1.255910943 1.398380242 1.12643607 0.911654356 0.837211824 1.328848491 1 17.95266597 -6.182508922 1.715916605 1.004282977 1.498395243 0.540376545 0.194038256 0.278249712 1.62463746 0.080192732 0.077454252 6.57E-07 6.182508922 0.494112266 GPS(ph)PSPVGS(ph)PASVAQSR ddPTM_HeLa_A486_30min_R1 1 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 2 0 GPS(1)PS(0.001)PVGS(1)PASVAQSR 166.6 1.19E-11 214180000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GPS(ph)PSPVGSPASVAQSR ddPTM_HeLa_A485_30min_R1 3 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 GPS(0.722)PS(0.277)PVGSPASVAQSR;GPS(0.768)PS(0.232)PVGSPASVAQSR;GPS(0.992)PS(0.008)PVGSPASVAQSR ;; 299.38 1.44E-68 2406210000 486788 506980 530087 1240710 727710 602360 1235030 1009470 539611 1545820 TRUE FALSE FALSE 595072.3112 566266.9009 726188.2401 1308486.846 655256.6373 633898.6382 971155.7512 761895.8997 647905.9781 1160475.523 0.512783165 0.48796109 0.625767822 1.127543684 0.564644945 0.546240421 0.836860177 0.656537673 0.558310766 1 20.14628466 -11.5614861 2.186722011 6.66901051 0.664573681 0.238874756 0.183059293 9102821.12 357833.6892 258134717.4 0.051573131 2.74E-12 11.5614861 -6.004436829 GPS(ph)PSPVGSPASVAQSR ddPTM_HeLa_A486_30min_R1 4 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 GPS(0.99)PS(0.01)PVGSPASVAQSR;GPS(0.999)PS(0.001)PVGSPASVAQSR;GPS(0.857)PS(0.143)PVGSPASVAQSR;GPS(0.994)PS(0.006)PVGSPASVAQSR ;;; 260.58 1.40E-51 3427997000 656770 764640 671027 246862 801460 671550 859560 781500 621262 805510 TRUE FALSE FALSE 610733.8146 704047.1416 930866.6251 574707.2117 700933.4135 588700.9888 644488.9965 603569.51 675113.4904 603805.053 1.011475163 1.166017307 1.541667498 0.951809212 1.160860463 0.974985197 1.06737927 0.999609902 1.118098444 1 19.2037233 GPS(ph)PSS(ph)PTPPAAAAPAEQAPR ddPTM_HeLa_A485_30min_R1 2 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 GPS(1)PSS(0.959)PT(0.041)PPAAAAPAEQAPR;GPS(0.999)PS(0.001)S(0.997)PT(0.003)PPAAAAPAEQAPR ; 345.14 2.12E-127 1610990000 387290 553940 552750 432170 687350 520800 585150 716450 534600 528670 TRUE FALSE FALSE 473441.3244 618718.4644 757235.2268 455778.3528 618915.0206 548068.2827 460127.9223 540739.5141 641889.3164 396882.2985 1.192901085 1.55894699 1.907959185 1.148396778 1.55944224 1.380934057 1.159356122 1.362468208 1.617329165 1 18.59835169 -6.03846616 1.274161763 1.316655039 1.510715444 0.094717669 0.248212651 1.147614366 3.863137796 0.110867549 0.121631996 9.15E-07 6.03846616 0.194060404 GPS(ph)PSS(ph)PTPPAAAAPAEQAPR ddPTM_HeLa_A486_30min_R1 4 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 GPS(1)PS(0.001)S(0.996)PT(0.004)PPAAAAPAEQAPR;GPS(0.995)PS(0.005)S(0.949)PT(0.05)PPAAAAPAEQAPR;GPS(0.969)PS(0.037)S(0.983)PT(0.01)PPAAAAPAEQAPR;GPS(1)PSS(0.997)PT(0.003)PPAAAAPAEQAPR ;;; 263.52 9.12E-59 3476630000 1299160 1534270 1279010 526596 1789970 1384370 1570950 1642550 1222540 1573530 TRUE FALSE FALSE 1208095.593 1412688.857 1774276.925 1225942.101 1565455.272 1213580.505 1177881.694 1268577.222 1328510.752 1179507.846 1.024237013 1.197693481 1.504251906 1.039367483 1.327210562 1.028887183 0.99862133 1.075514017 1.126326337 1 20.16975358 -6.280395129 24.24462058 1.04763635 1.223310791 0.297371389 0.132603675 731.814641 935995.7728 0.046558444 0.041133244 5.24E-07 6.280395129 0.175674441 GPS(ph)PTPEDVSMKEENLCQAFSDALLCK ddPTM_HeLa_A485_30min_R1 2 GPSPTPEDVSMKEENLCQAFSDALLCK 27 1 H1UBN3;O95067 H1UBN3 CCNB2V;CCNB2 G2/mitotic-specific cyclin-B2 1 0 GPS(0.979)PT(0.021)PEDVSMKEENLCQAFSDALLCK;GPS(0.997)PT(0.003)PEDVSMKEENLCQAFSDALLCK ; 182.74 1.79E-20 155885000 55575 29549 33438 91136 68754 49284 67704 52860 50065 130375 TRUE FALSE FALSE 67937.46702 33004.49851 45808.10767 96114.52891 61908.61035 51864.43403 53238.48731 39896.00212 60112.58628 97874.91187 0.694125448 0.337211016 0.468027064 0.982013951 0.632527878 0.529905295 0.543944166 0.407622355 0.61417768 1 16.57865148 -8.041970075 22.88409586 1.000000003 0.571923787 0.363251315 0.167990485 3612.284629 1969588.395 0.170533177 0.044031477 9.08E-09 8.041970075 -0.428076216 GPS(ph)PTPEDVSMKEENLCQAFSDALLCK ddPTM_HeLa_A486_30min_R1 4 GPSPTPEDVSMKEENLCQAFSDALLCK 27 1 H1UBN3;O95067 H1UBN3 CCNB2V;CCNB2 G2/mitotic-specific cyclin-B2 1 0 GPS(0.999)PT(0.001)PEDVSMKEENLCQAFSDALLCK;GPS(0.994)PT(0.006)PEDVSMKEENLCQAFSDALLCK;GPS(0.996)PT(0.004)PEDVSMKEENLCQAFSDALLCK;GPS(0.935)PT(0.065)PEDVSMKEENLCQAFSDALLCK ;;; 186.17 1.36E-20 340800000 88517.1 123388.3 80122.9 75898.5 134073.9 153794.3 182667.7 180878.9 107434.5 151552.9 TRUE FALSE FALSE 82312.50839 113610.5617 111148.6326 176695.5437 117257.1013 134820.7229 136962.3094 139696.723 116747.009 113603.0674 0.724562376 1.00006597 0.978394644 1.555376521 1.032164923 1.186770094 1.205621578 1.229691471 1.027674795 1 16.79364226 -4.491493849 1.714292943 1.179354097 0.690567273 0.413437905 0.158459394 0.549492739 2.261015647 0.043040788 0.381836865 3.22E-05 4.491493849 -0.488786824 GPS(ph)TPNVK ddPTM_HeLa_A485_30min_R1 1 GPSTPNVK 8 0 Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8-2 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 GPS(0.5)T(0.5)PNVK 115.7 0.00096962 542670000 1438100 1638200 1350000 1726400 2183800 1717000 2271400 2382600 1598000 2291800 TRUE FALSE FALSE 1758000.384 1829773.24 1849421.178 1820708.861 1966373.204 1806899.465 1786096.834 1798263.614 1918703.942 1720496.437 1.021798328 1.063514692 1.074934617 1.058246225 1.142910361 1.050219824 1.038128761 1.045200429 1.115203671 1 20.71439347 -4.266594125 4.086341107 1.068256302 1.018049108 0.103456195 0.037876916 0.494080327 17.98777393 0.009323021 0.072724511 5.41E-05 4.266594125 -0.050207195 GPS(ph)TPNVK ddPTM_HeLa_A486_30min_R1 2 GPSTPNVK 8 0 Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8-2 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 GPS(0.5)T(0.5)PNVK;GPS(0.5)T(0.5)PNVK ; 130.41 0.00054855 632490000 2217370 2423510 1658040 940140 2576000 2377180 2848440 2913630 1811030 2703070 TRUE FALSE FALSE 2061943.814 2231462.241 2300077.492 2188693.432 2252894.06 2083907.701 2135730.184 2250260.053 1968011.539 2026203.678 1.017638965 1.101302039 1.135165984 1.080194186 1.111879365 1.028478886 1.054055033 1.110579394 0.971280212 1 20.95034777 -7.767047699 24.99858179 0.985640056 1.080965237 0.520594738 0.036174849 115.9879701 516979.1707 0.032278038 0.009257869 1.71E-08 7.767047699 0.095325181 GPS(ph)WDPFR ddPTM_HeLa_A485_30min_R1 9 GPSWDPFR 8 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR ;;;;;;;; 114.97 0.0010027 3590631000 1981618 1658970 1979662 2007861 1848397 1971800 2313894 1912511 1474263 2302615 TRUE FALSE FALSE 2422422.088 1852972.11 2712021.354 2117545.362 1664364.105 2075040.399 1819511.644 1443464.679 1770134.061 1728615.457 1.401365514 1.071940033 1.568898012 1.224995041 0.962830743 1.200406019 1.052583232 0.835040941 1.024018416 1 20.72118554 -5.614238184 4.809683113 1.016946734 1.331338014 0.535134293 0.141796534 0.17162669 6.833340326 0.042588933 0.055669395 2.43E-06 5.614238184 0.31439128 GPS(ph)WDPFR ddPTM_HeLa_A486_30min_R1 8 GPSWDPFR 8 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR ;;;;;;; 135.43 0.00048536 4056557000 2263426 3446069 3693871 1075192 3876130 4086670 3940210 3721185 4679260 3963730 TRUE FALSE FALSE 2104771.526 3172989.942 5124236.776 2503101.313 3389949.632 3582498.206 2954327.783 2873952.408 5084862.024 2971186.208 0.708394351 1.067920258 1.724643431 0.84245858 1.140941494 1.205746781 0.994326029 0.967274417 1.711391232 1 21.50260759 -7.714722787 24.99960077 1.355710901 1.097705101 0.115539486 0.300821221 239.5477152 128189.8599 0.198492247 0.075022473 1.93E-08 7.714722787 -0.258005799 GPS(ph)WDPFRDWYPHSR ddPTM_HeLa_A485_30min_R1 5 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR ;;;; 140.2 1.04E-06 6462750000 1515557 1727909 1961460 1260698 2168490 2657590 3046970 3652580 1376637 1640902 TRUE FALSE FALSE 1852687.426 1929972.927 2687085.677 1329566.739 1952587.522 2796737.303 2395959.968 2756779.028 1652915.419 1231855.33 1.503981337 1.566720442 2.181332184 1.079320523 1.5850786 2.27034558 1.945001097 2.237908106 1.34180969 1 20.2324014 GPS(ph)WDPFRDWYPHSR ddPTM_HeLa_A486_30min_R1 5 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR;GPS(0.998)WDPFRDWY(0.001)PHS(0.001)R;GPS(1)WDPFRDWYPHSR;GPS(1)WDPFRDWYPHSR ;;;; 175.21 6.49E-13 3969326000 939853 1236717 1679670 519598 2244420 1484011 1804602 1823537 1662652 1536367 TRUE FALSE FALSE 873974.1581 1138715.041 2330083.207 1209650.403 1962903.915 1300928.811 1353071.492 1408357.433 1806772.014 1151650.703 0.758888225 0.988767721 2.023255142 1.050362232 1.704426446 1.129620993 1.174897466 1.222903289 1.568854175 1 20.13527178 -3.190655792 0.001452348 1.139439544 1.426513609 0 0.366220947 46774216.32 9539.967345 933416.5747 952378.984 0.00064468 3.190655792 0.287074065 GPSHPLDLGTS(ph)SPNTSQIHWTPYR ddPTM_HeLa_A485_30min_R1 1 GPSHPLDLGTSSPNTSQIHWTPYR 24 0 O60504-2;O60504;H0YAZ3 O60504-2 SORBS3 Vinexin 1 0 GPSHPLDLGTS(0.565)S(0.435)PNTSQIHWTPYR 217.84 3.95E-38 369050000 160910 384590 492970 89534 492320 261110 287150 323420 291760 178870 TRUE FALSE FALSE 196703.8744 429564.455 675340.1172 94425.01571 443302.8922 274781.3158 225798.0567 244100.7379 350313.5558 134281.0009 1.464867503 3.198996524 5.029305061 0.703189693 3.301307626 2.046315667 1.681533912 1.817835258 2.608809538 1 17.03489567 -6.024806658 1.030928425 1.830201216 2.967078089 0.12718744 1.143054158 1.10300042 2.511657175 0.576088721 0.662624239 9.44E-07 6.024806658 1.136876874 GPSHPLDLGTSS(ph)PNTSQIHWTPYR ddPTM_HeLa_A485_30min_R1 3 GPSHPLDLGTSSPNTSQIHWTPYR 24 0 O60504-2;O60504;H0YAZ3 O60504-2 SORBS3 Vinexin 1 0 GPSHPLDLGTS(0.032)S(0.967)PNT(0.001)SQIHWTPYR;GPSHPLDLGTS(0.059)S(0.94)PNT(0.001)SQIHWTPYR;GPSHPLDLGT(0.001)S(0.034)S(0.965)PNTSQIHWTPYR ;; 267.4 5.30E-62 1524250000 559908 1331440 1482930 224007 1425190 821680 932540 998010 963910 541225 TRUE FALSE FALSE 684457.6029 1487140.326 2031527.517 236243.9352 1283293.079 864701.8942 733295.2108 753246.4827 1157357.895 406307.568 1.68458 3.660134448 4.999974593 0.581441139 3.158427705 2.128195393 1.804778617 1.853882482 2.848477328 1 18.63221271 -5.264027552 24.9999937 2.002953888 3.469420096 0.313874098 1.035299547 283.5299559 2738714.188 0.283001816 0.442366625 5.44E-06 5.264027552 1.466466208 GPSHPLDLGTSS(ph)PNTSQIHWTPYR ddPTM_HeLa_A486_30min_R1 4 GPSHPLDLGTSSPNTSQIHWTPYR 24 0 O60504-2;O60504;H0YAZ3 O60504-2 SORBS3 Vinexin 1 0 GPSHPLDLGTS(0.262)S(0.738)PNTSQIHWTPYR;GPSHPLDLGT(0.002)S(0.03)S(0.967)PNT(0.001)SQIHWTPYR;GPSHPLDLGTS(0.004)S(0.996)PNTSQIHWTPYR;GPSHPLDLGTS(0.001)S(0.992)PNT(0.006)S(0.001)QIHWTPYR ;;; 305 4.72E-90 1649830000 1199300 1237800 1512240 114095 1769450 784600 928960 1007220 1111010 397160 TRUE FALSE FALSE 1115235.263 1139712.22 2097819.827 265618.926 1547509.082 687804.0292 696524.3825 777897.9935 1207313.241 297708.5509 3.746063926 3.828281776 7.046555501 0.892211276 5.198067293 2.310326751 2.339618329 2.612951462 4.05535292 1 18.18354113 -5.743215469 1.075560854 2.614413471 4.509685612 0.189462678 1.614251262 0.904942949 2.226054221 0.685103276 1.059706792 1.81E-06 5.743215469 1.895272141 GPSLDIDT(ph)PDVNIEGPEGK ddPTM_HeLa_A485_30min_R1 3 GPSLDIDTPDVNIEGPEGK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPSLDIDT(1)PDVNIEGPEGK;GPSLDIDT(1)PDVNIEGPEGK;GPSLDIDT(1)PDVNIEGPEGK ;; 258.82 2.16E-57 272560000 843403 615419 544803 980854 879931 660296 820389 664715 684984 1307905 TRUE FALSE FALSE 1031015.088 687386.8986 746348.3008 1034435.57 792321.98 694868.0775 645106.1882 501692.604 822454.0058 981868.3537 1.050054301 0.700080511 0.760130722 1.053537948 0.806953373 0.707699841 0.657019025 0.510957097 0.837641831 1 19.90517008 -6.115258355 4.3014649 0.707658109 0.874017057 0.13953733 0.158415037 0.393625205 12.05745255 0.052568146 0.053063472 7.67E-07 6.115258355 0.166358948 GPSLDIDT(ph)PDVNIEGPEGK ddPTM_HeLa_A486_30min_R1 3 GPSLDIDTPDVNIEGPEGK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPS(0.001)LDIDT(0.999)PDVNIEGPEGK;GPSLDIDT(1)PDVNIEGPEGK;GPSLDIDT(1)PDVNIEGPEGK ;; 328.15 4.15E-101 358360000 762342 855849 608954 345342 972571 996830 1189863 1076080 822184 1226564 TRUE FALSE FALSE 708905.7625 788028.4083 844757.2972 803973.6286 850582.0763 873851.2496 892146.6923 831080.0747 893451.5711 919424.3908 0.771032148 0.857088866 0.918789305 0.874431478 0.925124551 0.950432965 0.970331765 0.903913452 0.971751 1 19.81037141 -2.311072979 0.386432501 0.963528285 5.47E-15 0.810090473 0.027809762 10.94194813 0.384346947 0.021391372 6.67707124 0.004885703 2.311072979 -0.963528285 GPSPAPASS(ph)PK ddPTM_HeLa_A486_30min_R1 2 GPSPAPASSPK 11 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GPSPAPAS(0.03)S(0.97)PK;GPSPAPAS(0.119)S(0.881)PK ; 118.77 0.00022913 373650000 1202340 1201730 638540 792070 1084000 1343670 1691100 1524400 969570 2241500 TRUE FALSE FALSE 1118062.175 1106500.538 885799.7887 1843978.989 948034.6121 1177901.657 1267968.893 1177327.397 1053613.108 1680213.81 0.665428512 0.658547461 0.527194684 1.097466869 0.564234508 0.701042718 0.754647346 0.700700941 0.627070854 1 20.6802134 -10.28801871 3.483196616 1.000980096 0.702730476 0.271603926 0.147506288 179734875.9 272863392.3 1859254.977 0.036802824 5.15E-11 10.28801871 -0.29824962 GPSPFS(ph)PVQLHQLR ddPTM_HeLa_A485_30min_R1 1 GPSPFSPVQLHQLR 14 0 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0A0MT03;F6RS74;A0A1B0GWA8;A0A1B0GU54 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GPS(0.003)PFS(0.997)PVQLHQLR 121.45 4.48E-05 108720000 64437 63202 69755 90221 87566 58771 70620 59420 68911 99108 TRUE FALSE FALSE 78770.78834 70592.92412 95560.27725 95149.54478 78847.62158 61848.15868 55531.46009 44847.15183 82740.80561 74402.19955 1.058715855 0.948801575 1.284374358 1.278853923 1.05974853 0.83126788 0.746368527 0.602766479 1.112074725 1 16.18305765 -6.181897273 3.831771201 0.825477017 1.141225303 0.412932208 0.159036298 0.221570011 6.205893556 0.056071348 0.055396893 6.58E-07 6.181897273 0.315748287 GPSPFS(ph)PVQLHQLR ddPTM_HeLa_A486_30min_R1 1 GPSPFSPVQLHQLR 14 0 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0A0MT03;F6RS74;A0A1B0GWA8;A0A1B0GU54 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GPSPFS(1)PVQLHQLR 187.56 1.07E-17 109060000 75841 102700 98093 50910 110450 96623 85760 97976 93076 105120 TRUE FALSE FALSE 70524.93754 94561.67797 136077.2366 118521.0528 96596.33109 84702.63665 64301.94092 75669.0036 101143.9026 78797.26778 0.89501755 1.200062904 1.726928362 1.504126427 1.22588427 1.074943828 0.816042773 0.960299839 1.28359657 1 16.26585799 -6.183921758 3.127886154 1.007361508 1.350077385 0.284622415 0.227193652 0.342646356 6.547639488 0.08721543 0.085459029 6.55E-07 6.183921758 0.342715877 GPSPS(ph)PVGSPASVAQSR ddPTM_HeLa_A485_30min_R1 1 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 GPS(0.393)PS(0.607)PVGSPASVAQSR 143.46 8.30E-08 750550000 128980 144600 135800 166630 173610 110450 133830 135500 128970 192830 TRUE FALSE FALSE 157671.156 161509.7121 186038.0711 175732.575 156324.7788 116232.9912 105236.1272 102268.4125 154853.096 144761.0298 1.089182332 1.115698834 1.28513918 1.213949467 1.079881644 0.802930121 0.726964483 0.706463699 1.069715353 1 17.14331375 -6.1281699 3.665918915 0.834773951 1.17707144 0.61680031 0.117191556 0.154990513 3.73979456 0.040868156 0.041186643 7.44E-07 6.1281699 0.342297489 GPSPS(ph)PVGSPASVAQSR ddPTM_HeLa_A486_30min_R1 1 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 GPS(0.172)PS(0.828)PVGSPASVAQSR 246.19 1.22E-42 955180000 205550 219200 175270 73076 229890 203720 215790 229070 222180 296350 TRUE FALSE FALSE 191142.0065 201829.7937 243139.2379 170124.6211 201055.0526 178587.0977 161797.0596 176915.7616 241438.7413 222142.0311 0.860449531 0.908561935 1.09452154 0.765837155 0.905074342 0.803932047 0.728349601 0.796408319 1.086866543 1 17.76112286 -4.199547627 18.01505891 0.886336737 0.86044478 0 0.123156506 18607.28293 5409871.808 0.03111749 21.43372148 6.32E-05 4.199547627 -0.025891957 GPSPSS(ph)PTPPAAAAPAEQAPR ddPTM_HeLa_A485_30min_R1 2 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 GPS(0.013)PS(0.037)S(0.95)PTPPAAAAPAEQAPR;GPSPS(0.003)S(0.996)PT(0.001)PPAAAAPAEQAPR ; 237.16 1.05E-41 381490000 261380 375600 415190 274170 454310 356560 387990 438010 335500 365380 TRUE FALSE FALSE 319523.0792 419523.1527 568786.0585 289147.2129 409077.3012 375228.9303 305092.7669 330587.3607 402831.7726 274297.4903 1.164877881 1.52944583 2.073610144 1.054137289 1.491363631 1.36796341 1.112269626 1.205214675 1.468594452 1 18.0653819 -5.958722853 1.179601674 1.226174025 1.533387897 0.161148943 0.276571091 0.875884713 2.570252766 0.125805367 0.150614265 1.10E-06 5.958722853 0.307213872 GPSQEEEDNHS(ph)DEEDR ddPTM_HeLa_A485_30min_R1 2 GPSQEEEDNHSDEEDR 16 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPSQEEEDNHS(1)DEEDR;GPSQEEEDNHS(1)DEEDR ; 240.85 1.29E-41 1278700000 380190 585810 471210 346470 332890 377080 342060 279060 383680 388280 TRUE FALSE FALSE 464761.9539 654315.3836 645530.1877 365396.7788 299746.3028 396823.3257 268976.0866 210620.0975 460681.0567 291488.9418 1.594441117 2.244734842 2.214595805 1.253552799 1.028328214 1.361366655 0.922766006 0.722566339 1.580440938 1 18.15308163 -5.347549359 4.811296022 1.098361988 2.038715333 0.687221409 0.27708582 0.117991337 4.714834478 0.078097488 0.118570674 4.49E-06 5.347549359 0.940353345 GPSQEEEDNHS(ph)DEEDR ddPTM_HeLa_A486_30min_R1 2 GPSQEEEDNHSDEEDR 16 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPSQEEEDNHS(1)DEEDR;GPSQEEEDNHS(1)DEEDR ; 233.3 3.22E-35 1159850000 634830 737780 552290 154119 515720 500710 454060 466340 587100 664060 TRUE FALSE FALSE 590331.6953 679315.6259 766151.4788 358796.8207 451033.5887 438937.491 340449.3854 360164.5621 637990.3007 497775.0537 1.185940699 1.364704038 1.539152019 0.720801129 0.906099222 0.881798892 0.68394224 0.723548839 1.281683957 1 18.92513441 -5.263561761 24.99996649 0.866208829 1.363409438 0.591450914 0.181508322 123.1552752 1450678.137 0.050243775 0.078912167 5.45E-06 5.263561761 0.497200609 GPSQEEEDNHS(ph)DEEDRAS(ph)EPK ddPTM_HeLa_A485_30min_R1 3 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 GPSQEEEDNHS(1)DEEDRAS(1)EPK;GPS(0.007)QEEEDNHS(0.993)DEEDRAS(1)EPK;GPSQEEEDNHS(1)DEEDRAS(1)EPK ;; 192.35 3.27E-19 1274050000 2206250 2029870 1536130 3541890 2390890 2088830 2949260 2550520 1855260 4523990 TRUE FALSE FALSE 2697022.701 2267245.639 2104408.411 3735374.482 2152844.597 2198197.909 2319126.508 1925000.971 2227593.665 3396242.551 0.794119578 0.667574711 0.619628421 1.099855039 0.63389012 0.647244087 0.682850672 0.566803149 0.655899463 1 21.69550807 GPSQEEEDNHS(ph)DEEDRAS(ph)EPK ddPTM_HeLa_A486_30min_R1 2 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 GPSQEEEDNHS(1)DEEDRAS(1)EPK;GPSQEEEDNHS(1)DEEDRAS(1)EPK ; 211.62 1.29E-26 1251130000 821260 866960 494930 514500 722550 849440 1065290 933980 659590 1456730 TRUE FALSE FALSE 763693.915 798258.9322 686580.1507 1197782.001 631921.0415 744644.7293 798743.1745 721333.1426 716763.7923 1091955.326 0.699382014 0.731036255 0.628762124 1.096914839 0.578705947 0.681936991 0.731479718 0.660588511 0.656403953 1 20.0584824 -9.990333587 4.394380723 1.000009881 0.720736925 0.283745653 0.134194448 176935999.1 545488046.2 31159.41404 0.032988764 1.02E-10 9.990333587 -0.279272956 GPSQEEEDNHS(ph)DEEDRASEPK ddPTM_HeLa_A485_30min_R1 3 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPSQEEEDNHS(1)DEEDRASEPK;GPSQEEEDNHS(1)DEEDRASEPK;GPSQEEEDNHS(1)DEEDRASEPK ;; 276.23 7.92E-73 3462290000 1144140 1019050 1037490 1762530 1577730 1224510 1735660 1542130 1294980 2300600 TRUE FALSE FALSE 1398649.996 1138219.033 1421300.725 1858812.551 1420645.661 1288623.45 1364822.062 1163920.2 1554870.608 1727102.759 0.809824423 0.659033764 0.822939293 1.076260541 0.822560009 0.746118575 0.790237902 0.673914851 0.900276836 1 20.71992249 GPSQEEEDNHS(ph)DEEDRASEPK ddPTM_HeLa_A486_30min_R1 2 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPSQEEEDNHS(1)DEEDRASEPK;GPSQEEEDNHS(1)DEEDRASEPK ; 240.08 1.40E-46 2902900000 535230 586510 383140 278040 572180 654480 839710 739650 439670 800770 TRUE FALSE FALSE 497713.1409 540032.8116 531502.0688 647291.1714 500411.849 573736.9119 629605.6765 571247.8414 477780.9496 600251.9799 0.829173676 0.899676852 0.885464916 1.078365742 0.833669635 0.955826771 1.04890229 0.951680062 0.795967303 1 19.19520873 -4.605447032 1.837360583 0.949164578 0.832513304 0.161178142 0.083165562 0.866380332 4.809254578 0.023291992 0.138853138 2.48E-05 4.605447032 -0.116651274 GPSS(ph)VEDIK ddPTM_HeLa_A486_30min_R1 2 GPSSVEDIK 9 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 GPS(0.036)S(0.964)VEDIK;GPS(0.006)S(0.994)VEDIK ; 172.21 4.79E-06 2421220000 2361320 2606110 1545330 1307420 2479380 3003580 3408250 3259790 1920690 3425340 TRUE FALSE FALSE 2195803.662 2399592.352 2143723.161 3043739.833 2168393.041 2633028.838 2555469.801 2517606.978 2087176.956 2567612.569 0.855192753 0.934561694 0.834909124 1.18543579 0.844517225 1.025477469 0.995270794 0.98052448 0.812886251 1 21.2919961 GPSSVEDIK ddPTM_HeLa_A485_30min_R1 1 GPSSVEDIK 9 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 107.15 0.011183 46772000 56021 62979 60023 77677 84753 69541 89165 94188 67134 102580 FALSE FALSE TRUE 68482.67818 70343.84621 82228.00547 81920.29782 76314.69373 73182.05923 70114.16934 71088.24532 80607.17801 77008.69384 0.889285024 0.913453309 1.067775615 1.063779863 0.990988029 0.950309057 0.910470829 0.923119738 1.046728285 1 16.23273371 -4.884539409 0.003273184 1.939054148 3.00E-06 0.029831061 0.063154668 388733.3777 245.1997758 71242.04522 74029.86527 1.30E-05 4.884539409 -1.939051148 GPST(ph)PNVK ddPTM_HeLa_A485_30min_R1 1 GPSTPNVK 8 0 Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8-2 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 GPS(0.031)T(0.969)PNVK 99.788 0.011015 364480000 1212400 1298700 1122800 1417700 1795800 1489500 1846500 2049900 1353500 1874900 TRUE FALSE FALSE 1482094.197 1450571.668 1538170.444 1495145.361 1617003.847 1567487.917 1451980.19 1547158.811 1625135.035 1407521.935 1.052981243 1.030585479 1.09282165 1.062253684 1.1488303 1.113650791 1.03158619 1.099207602 1.154607253 1 20.42472597 -4.768591669 24.62207022 1.091585756 1.041783359 0.135962263 0.045710161 218.143869 750982.1078 0.0117047 0.025203219 1.70E-05 4.768591669 -0.049802398 GPSWDPFRDWYPHSR ddPTM_HeLa_A485_30min_R1 4 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ;;; ;;; 134.81 2.90E-05 1868514000 556204 806653 844531 387014 911150 1119580 1347160 1831730 557376 624587 FALSE FALSE TRUE 679929.6609 900984.0514 1156958.161 408155.5948 820432.7068 1178199.478 1059328.261 1382495.345 669236.2506 468888.9556 1.450086748 1.921529694 2.467445964 0.870473894 1.749737751 2.512747344 2.259230566 2.94844937 1.4272809 1 18.83888677 -6.112589116 8.721414398 2.1644512 1.697022891 0.046476945 0.635027094 0.754978503 53.55538111 0.204562372 0.20474022 7.72E-07 6.112589116 -0.467428309 GPSWDPFRDWYPHSR ddPTM_HeLa_A486_30min_R1 3 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ;; ;; 187.08 2.05E-17 1644431000 1117778 1374129 1699240 485717 2338474 1571620 1882335 1970096 1678155 1678890 FALSE FALSE TRUE 1039427.534 1265238.014 2357231.235 1130773.723 2045160.786 1377729.503 1411354.874 1521548.148 1823618.827 1258485.016 0.825935566 1.005365974 1.873070561 0.898519814 1.625097446 1.094752409 1.121471337 1.209031596 1.449058831 1 20.26325661 -4.535770028 24.99939823 1.28801051 0.870792764 0.226200589 0.281042045 255.4608117 495401.6807 0.066972428 0.177417788 2.91E-05 4.535770028 -0.417217746 GPSYEDLYTQNVVINMDDQEDLHRAS(ph)LEGK ddPTM_HeLa_A485_30min_R1 1 GPSYEDLYTQNVVINMDDQEDLHRASLEGK 30 1 C9IYL4;P29083 C9IYL4 GTF2E1 General transcription factor IIE subunit 1 1 0 GPSYEDLYTQNVVINMDDQEDLHRAS(1)LEGK 134.78 9.81E-07 42326000 3055.6 2342.5 2701.3 4288.1 5651.5 5225.7 5198.8 6226.2 4395.7 6330.5 TRUE FALSE FALSE 3735.307678 2616.434998 3700.62328 4522.348045 5088.816816 5499.309572 4088.03391 4699.214688 5277.87667 4752.422854 0.785979656 0.5505476 0.7786814 0.951587892 1.070783677 1.157159146 0.860199952 0.988803992 1.110565459 1 12.21444749 -5.223133274 2.616314743 1.026786652 0.667541848 0.714670442 0.093308222 0.146550853 1.977827626 0.027405513 0.051499253 5.98E-06 5.223133274 -0.359244804 GPSYEDLYTQNVVINMDDQEDLHRAS(ph)LEGK ddPTM_HeLa_A486_30min_R1 2 GPSYEDLYTQNVVINMDDQEDLHRASLEGK 30 1 C9IYL4;P29083 C9IYL4 GTF2E1 General transcription factor IIE subunit 1 1 0 GPSYEDLYTQNVVINMDDQEDLHRAS(1)LEGK;GPSYEDLYTQNVVINMDDQEDLHRAS(1)LEGK ; 307.11 1.02E-93 313290000 248274 242029 167251 135141 270377 294684 332097 317264 215299 366603 TRUE FALSE FALSE 230871.2747 222849.7406 232015.0663 314615.0776 236463.7955 258328.8842 249002.818 245029.913 233961.2907 274803.2226 0.840133069 0.810942967 0.844295289 1.144874047 0.86048407 0.940050418 0.906113166 0.891655894 0.851377536 1 18.0680394 -5.028314086 24.99711065 0.93735147 0.826058178 0.286559833 0.079867607 881.3560914 778105.8214 0.021636033 0.037580528 9.37E-06 5.028314086 -0.111293292 GPT(ph)PKPDLLR ddPTM_HeLa_A485_30min_R1 4 GPTPKPDLLR 10 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 GPT(1)PKPDLLR;GPT(1)PKPDLLR;GPT(1)PKPDLLR;GPT(1)PKPDLLR ;;; 89.629 0.0039242 903050000 2002770 1938650 1503480 2255540 2021040 2206530 2780060 2660130 1546590 3041590 TRUE FALSE FALSE 2448279.277 2165358.253 2059679.817 2378754.439 1819818.161 2322060.499 2186077.47 2007728.947 1856976.427 2283377.589 1.072218317 0.948313701 0.902032072 1.041770073 0.796985207 1.016941092 0.957387635 0.879280306 0.813258585 1 21.12273802 GPT(ph)PKPDLLR ddPTM_HeLa_A486_30min_R1 4 GPTPKPDLLR 10 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 GPT(1)PKPDLLR;GPT(1)PKPDLLR;GPT(1)PKPDLLR;GPT(1)PKPDLLR ;;; 100.55 0.001915 985140000 2746750 3136570 1991650 1299010 3033120 2978840 3673880 3392540 2459010 3648930 TRUE FALSE FALSE 2554217.009 2888016.77 2762870.218 3024160.928 2652677.807 2611341.007 2754636.366 2620132.701 2672158.967 2735214.177 0.933827058 1.055864946 1.010111106 1.105639534 0.969824531 0.954711711 1.007100792 0.957925972 0.976946884 1 21.38322238 GPTPAT(ph)PESFSK ddPTM_HeLa_A486_30min_R1 1 GPTPATPESFSK 12 0 P49454 P49454 CENPF Centromere protein F 1 0 GPT(0.01)PAT(0.989)PES(0.001)FSK 88.075 0.011581 221410000 316030 341450 247110 130920 315620 327900 404940 373290 272230 393750 TRUE FALSE FALSE 293877.929 314392.2585 342797.6098 304788.3763 276031.9966 287447.0318 303619.729 288300.0159 295827.1156 295152.4371 0.995681865 1.065186049 1.161425646 1.032647331 0.935218422 0.973893472 1.02868786 0.97678345 1.002285864 1 18.17110073 -5.523586316 24.99715197 0.986265343 1.077178311 0.452889139 0.043562397 21.10778246 745671.5543 0.013158145 0.017144364 3.00E-06 5.523586316 0.090912968 GPTS(ph)SPCEEEGDEGEEDRT(ph)SDLRDEAS(ph)SVTR ddPTM_HeLa_A486_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 0 GPT(0.065)S(0.468)S(0.468)PCEEEGDEGEEDRT(0.5)S(0.5)DLRDEAS(0.483)S(0.435)VT(0.082)R 121.32 2.11E-05 150160000 59437 84042 86031 29157 133150 97450 91538 103080 70363 82687 TRUE FALSE FALSE 55270.77323 77382.20584 119344.5072 67878.96951 116449.0854 85427.6098 68634.22421 79610.93422 76462.12149 61981.637 0.891728194 1.248469863 1.925481691 1.095146447 1.878767504 1.378272888 1.107331583 1.284427745 1.233625396 1 15.91955324 -7.657341247 0.847721109 1.034621918 1.409304245 0.118847281 0.307803163 1.227499685 1.827487426 0.293676546 0.112747226 2.20E-08 7.657341247 0.374682328 GPTS(ph)SPCEEEGDEGEEDRTSDLRDEASSVTR ddPTM_HeLa_A485_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPT(0.088)S(0.49)S(0.422)PCEEEGDEGEEDRTSDLRDEASSVTR 134.12 6.80E-07 401440000 34204 32947 63778 53777 107940 46104 75019 74533 79501 85462 TRUE FALSE FALSE 41812.5618 36799.86505 87372.13622 56714.70134 97193.1146 48517.93415 58990.5778 56253.66489 95456.12147 64157.89621 0.651713417 0.573582789 1.36182982 0.883986301 1.514904951 0.756227012 0.919459354 0.876800335 1.487831227 1 15.96933921 -4.742014025 24.93692778 1.08408911 0.61264766 0.366563908 0.255632465 250.7552953 321897.1787 0.062952259 0.166020348 1.81E-05 4.742014025 -0.47144145 GPTSS(ph)PCEEEGDEGEEDR ddPTM_HeLa_A485_30min_R1 2 GPTSSPCEEEGDEGEEDR 18 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPTS(0.001)S(0.999)PCEEEGDEGEEDR;GPTSS(1)PCEEEGDEGEEDR ; 400.08 3.77E-191 0 189119 217684 228770 174030 184584 133674 153714 126950 180340 206816 TRUE FALSE FALSE 231187.8691 243140.2502 313401.5429 183536.8182 166206.1688 140672.9639 120871.7482 95815.31345 216532.5838 155260.5774 1.489031363 1.56601408 2.018551961 1.182121188 1.070498202 0.906044318 0.778508944 0.617125835 1.394639821 1 17.24433203 -5.491240443 3.705485933 0.936438259 1.678503935 0.662841216 0.231262366 0.135121557 3.919795903 0.069206749 0.100655522 3.23E-06 5.491240443 0.742065676 GPTSS(ph)PCEEEGDEGEEDR ddPTM_HeLa_A486_30min_R1 1 GPTSSPCEEEGDEGEEDR 18 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPTSS(1)PCEEEGDEGEEDR 428.44 4.42E-244 0 92447 146450 102890 26327 90183 98207 92018 88599 103030 101560 TRUE FALSE FALSE 85966.9427 134844.7686 142731.7635 61290.58649 78871.40722 86091.21884 68994.12313 68426.9418 111960.7234 76128.71496 1.129231496 1.771273411 1.874874199 0.805091568 1.03602704 1.130863944 0.906282513 0.898832219 1.470676648 1 16.21615311 -5.2638648 24.99998811 1.02980531 1.609741077 0.513139764 0.248131707 163.018244 1680314.715 0.068428559 0.107159528 5.45E-06 5.2638648 0.579935767 GPTSS(ph)PCEEEGDEGEEDRT(ph)SDLRDEAS(ph)SVTR ddPTM_HeLa_A485_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 0 GPT(0.1)S(0.435)S(0.465)PCEEEGDEGEEDRT(0.5)S(0.5)DLRDEAS(0.362)S(0.339)VT(0.298)R 52.627 0.036889 339140000 48189 51018 86038 74141 117750 63698 89031 72252 73464 95880 TRUE FALSE FALSE 58908.4768 56984.1113 117867.0365 78191.1351 106026.3966 67033.12878 70008.79953 54532.08371 88207.55095 71978.88054 0.818413351 0.79167821 1.637522502 1.086306629 1.473020916 0.931288849 0.972629735 0.757612279 1.225464335 1 16.13528604 GPTSS(ph)PCEEEGDEGEEDRT(ph)SDLRDEAS(ph)SVTR ddPTM_HeLa_A486_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 0 GPT(0.311)S(0.333)S(0.356)PCEEEGDEGEEDRT(0.516)S(0.516)DLRDEAS(0.352)S(0.329)VT(0.287)R 61.871 0.013231 184740000 47218 82744 92484 30760 116480 82947 87968 90858 75099 71145 TRUE FALSE FALSE 43908.26203 76187.06409 128296.2816 71610.83452 101869.9923 72713.84248 65957.47597 70171.61682 81608.64179 53329.82892 0.823334013 1.428601322 2.405713354 1.342791379 1.910187869 1.363474137 1.236783941 1.315804274 1.530262584 1 15.70265508 -6.497599401 22.57637075 1.297472352 1.609132704 0.118821609 0.399109514 500.5353585 447017.0632 0.14367972 0.125994712 3.18E-07 6.497599401 0.311660352 GPTSS(ph)PCEEEGDEGEEDRT(ph)SDLRDEASS(ph)VTR ddPTM_HeLa_A486_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 3 0 GPT(0.03)S(0.153)S(0.817)PCEEEGDEGEEDRT(0.5)S(0.5)DLRDEAS(0.259)S(0.729)VT(0.011)R 139.16 6.64E-07 149240000 27636 40796 41548 14989 51196 41872 46672 44672 35490 34767 TRUE FALSE FALSE 25698.85911 37563.17638 57636.49829 34895.1495 44774.5203 36706.25836 34994.17195 34501.16078 38566.30178 26061.1169 0.986099683 1.441349445 2.211589722 1.338973676 1.71805838 1.408468351 1.3427733 1.323855801 1.479840711 1 14.66961129 -6.496744197 5.076842157 1.319656062 1.561337934 0.121991851 0.311593614 0.450574216 31.77479253 0.117593071 0.098295811 3.19E-07 6.496744197 0.241681872 GPTSTSIDNIDGT(ph)PVR ddPTM_HeLa_A485_30min_R1 2 GPTSTSIDNIDGTPVR 16 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 GPTSTSIDNIDGT(1)PVR;GPTSTSIDNIDGT(1)PVR ; 319.33 8.60E-78 675410000 922580 1375230 1073670 675350 702350 943910 797890 817460 696350 712720 TRUE FALSE FALSE 1127804.738 1536051.186 1470865.212 712242.6604 632421.5679 993331.668 627414.2833 616976.6533 836101.0577 535052.0206 2.107841284 2.870844565 2.74901347 1.331165257 1.181981459 1.856514189 1.172622958 1.153115266 1.562653771 1 19.02931964 -5.265216991 24.73220812 1.339099644 2.605394297 0.793288155 0.292982253 113.6913908 744344.6179 0.080271191 0.124425949 5.43E-06 5.265216991 1.266294653 GPTSTSIDNIDGT(ph)PVR ddPTM_HeLa_A486_30min_R1 2 GPTSTSIDNIDGTPVR 16 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 GPTSTSIDNIDGT(1)PVR;GPTSTSIDNIDGT(1)PVR ; 313.37 1.58E-77 525560000 1052660 1071750 711350 194823 656440 777520 664800 631570 804350 962600 TRUE FALSE FALSE 978873.9699 986820.6268 986803.7706 453557.7898 574103.1741 681597.4876 498460.0085 487775.2981 874071.7056 721558.6945 1.356610318 1.367623499 1.367600139 0.62858059 0.795643069 0.944618217 0.690810065 0.676002246 1.21136605 1 19.46075723 -5.247606387 24.66861958 0.831172267 1.364312621 0.67032906 0.164950364 370.7365152 661139.5597 0.043903884 0.07553158 5.65E-06 5.247606387 0.533140355 GPTSTSIDNIDGT(ph)PVRDER ddPTM_HeLa_A485_30min_R1 7 GPTSTSIDNIDGTPVRDER 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER ;;;;;; 210.43 1.28E-25 12470160000 4300028 6790603 7675529 4070919 7869443 6138768 6529509 7368626 5908261 5350716 TRUE FALSE FALSE 5256554.394 7584704.95 10515026.58 4293302.997 7085933.624 6460184.4 5134426.061 5561458.92 7093994.789 4016880.974 1.308615921 1.888207542 2.617709275 1.068815089 1.764038733 1.608258856 1.278212149 1.384521711 1.766045555 1 21.93764428 -5.287355565 24.99988577 1.443529526 1.933180956 0.28323613 0.382426886 1007.994416 972353.1542 0.107088166 0.158894421 5.16E-06 5.287355565 0.489651431 GPTSTSIDNIDGT(ph)PVRDER ddPTM_HeLa_A486_30min_R1 6 GPTSTSIDNIDGTPVRDER 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTS(0.001)IDNIDGT(0.999)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER ;;;;; 171.29 2.45E-12 11128960000 5209030 6269790 6229670 1572236 7911000 5410780 5258810 5830020 5332340 4693860 TRUE FALSE FALSE 4843903.896 5772949.006 8641965.06 3660244.864 6918728.613 4743252.976 3943000.116 4502651.714 5794551.525 3518486.904 1.376700846 1.640747618 2.456159507 1.040289467 1.966393169 1.348094538 1.120652207 1.279712512 1.646887336 1 21.74652371 -6.41938702 7.104784148 1.278172244 1.697722336 0.23572189 0.377404783 0.406052132 24.35955947 0.131295584 0.115367889 3.81E-07 6.41938702 0.419550092 GPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_HeLa_A485_30min_R1 2 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 0 GPTTGEGALDLS(0.005)DVHS(0.995)PPKS(1)PEGK;GPTTGEGALDLSDVHS(1)PPKS(1)PEGK ; 163.01 1.58E-13 575820000 267880 243670 169059 625660 331130 280820 406820 412940 205910 794620 TRUE FALSE FALSE 327468.9818 272165.0869 231600.9592 659838.2215 298161.5345 295523.301 319899.5836 311665.8175 247234.2483 596535.8579 0.548951044 0.456242627 0.388243148 1.106116611 0.499821646 0.495399056 0.53626212 0.522459486 0.414449936 1 19.18624934 -10.61648415 3.163817249 1.027153151 0.556128874 0.328365533 0.192135568 106290090.5 115539078.9 23786580.47 0.04817351 2.42E-11 10.61648415 -0.471024278 GPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_HeLa_A486_30min_R1 1 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 0 GPTTGEGALDLSDVHS(1)PPKS(1)PEGK 174.15 4.40E-14 267590000 117030 125710 54066 87708 85628 174050 236890 205690 114030 311050 TRUE FALSE FALSE 108826.8013 115748.2818 75001.80314 204188.6565 74887.73779 152577.4806 177617.6164 158858.8772 123914.2122 233161.0554 0.466745191 0.496430596 0.321673802 0.875740831 0.321184589 0.654386644 0.761780805 0.681326806 0.5314533 1 17.83096731 -13.99999997 0.091027886 2.373516088 0.228483743 0.432920384 0.161323958 198.4401158 1.250210635 52.86109952 3.592457176 1.00E-14 13.99999997 -2.145032344 GPTTGEGALDLSDVHS(ph)PPKSPEGK ddPTM_HeLa_A485_30min_R1 1 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 1 0 GPTTGEGALDLSDVHS(0.5)PPKS(0.5)PEGK 209.83 3.82E-29 277330000 236190 156330 103930 390900 247430 203670 352620 288610 168270 610370 TRUE FALSE FALSE 288729.6507 174611.4336 142378.0319 412253.8772 222795.0004 214333.8463 277279.8564 217827.945 202040.2455 458215.992 0.630116922 0.381067961 0.310722529 0.899693342 0.486222664 0.467757237 0.605129156 0.475382677 0.440927966 1 18.80566828 -9.958423604 4.111248568 1.000024126 0.521089322 0.462872758 0.154507547 51851253.69 104342834.5 18521.81461 0.038117256 1.10E-10 9.958423604 -0.478934805 GPTTGEGALDLSDVHS(ph)PPKSPEGK ddPTM_HeLa_A486_30min_R1 2 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 1 0 GPTTGEGALDLSDVHS(0.986)PPKS(0.014)PEGK;GPTTGEGALDLSDVHS(0.831)PPKS(0.169)PEGK ; 285.77 9.70E-76 578300000 626890 622810 267180 262490 539580 802290 1030800 922960 497110 1071540 TRUE FALSE FALSE 582948.2483 573456.2674 370639.2513 611089.9855 471900.845 703311.6169 772882.9373 712822.1561 540199.8951 803219.4094 0.725764643 0.713947224 0.4614421 0.76080082 0.587511755 0.875615814 0.962231401 0.887456338 0.672543378 1 19.61543461 -6.271732788 24.16188615 0.877701809 0.649143878 0.511636683 0.112187145 382.2970802 897369.0884 0.038916974 0.03472394 5.35E-07 6.271732788 -0.228557932 GPVS(ph)PSVSFQPLAR ddPTM_HeLa_A485_30min_R1 2 GPVSPSVSFQPLAR 14 0 Q7Z434-4;Q7Z434 Q7Z434-4 MAVS Mitochondrial antiviral-signaling protein 1 0 GPVS(0.961)PS(0.037)VS(0.003)FQPLAR;GPVS(0.986)PS(0.014)VSFQPLAR ; 169.4 4.26E-12 257350000 132876 189571 166546 212969 166281 147046 166056 171605 157345 268170 TRUE FALSE FALSE 162433.8078 211739.6794 228158.296 224602.9572 149725.4798 154745.1012 130576.779 129518.6047 188922.6982 201320.1543 0.806843251 1.051755996 1.133310754 1.115650631 0.743718284 0.768651811 0.648602618 0.643346441 0.938419201 1 17.61913208 -5.769057351 24.9982725 0.764440756 1.036267767 0.415025625 0.135233369 149.1443865 489414.3363 0.041786431 0.048285196 1.70E-06 5.769057351 0.271827011 GPVS(ph)PSVSFQPLAR ddPTM_HeLa_A486_30min_R1 2 GPVSPSVSFQPLAR 14 0 Q7Z434-4;Q7Z434 Q7Z434-4 MAVS Mitochondrial antiviral-signaling protein 1 0 GPVS(0.986)PS(0.014)VSFQPLAR;GPVS(0.925)PS(0.075)VSFQPLAR ; 169.37 4.27E-12 322680000 191356 219699 179388 441130 226410 248070 290800 285460 232380 563470 TRUE FALSE FALSE 177942.9326 202289.2511 248851.8378 1026972.933 198011.5466 217465.6456 218038.7642 220466.9895 252522.8855 422373.4444 0.421292898 0.478934587 0.589174914 2.431433479 0.468806809 0.51486581 0.51622271 0.521971711 0.597866388 1 18.68815961 GPVSGS(ph)PDSMNASR ddPTM_HeLa_A485_30min_R1 2 GPVSGSPDSMNASR 14 0 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 GPVS(0.012)GS(0.954)PDS(0.034)MNASR;GPVS(0.01)GS(0.731)PDS(0.258)MNAS(0.001)R ; 106.76 0.00034185 1120470000 659660 812080 1012540 758990 986950 757380 832210 769960 916270 1107150 TRUE FALSE FALSE 806399.0912 907045.6918 1387120.681 800451.7018 888685.7926 797035.2457 654401.535 581126.1027 1100156.984 831157.8806 0.970211689 1.091303726 1.668901557 0.963056142 1.069214181 0.958945664 0.78733722 0.699176554 1.323643811 1 19.66476302 -5.462917786 24.99997089 0.954210884 1.242876243 0.22632098 0.228808346 356.0026303 148430.1053 0.065190428 0.096692845 3.44E-06 5.462917786 0.288665358 GPVSGS(ph)PDSMNASR ddPTM_HeLa_A486_30min_R1 5 GPVSGSPDSMNASR 14 0 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 GPVSGS(0.999)PDS(0.001)MNASR;GPVSGS(1)PDSMNASR;GPVS(0.152)GS(0.579)PDS(0.269)MNASR;GPVS(0.005)GS(0.986)PDS(0.009)MNASR;GPVS(0.007)GS(0.976)PDS(0.015)MNAS(0.001)R ;;;; 310.9 1.17E-68 1384770000 1522934 2041131 2112724 357271 2413170 1431697 1310209 1561357 1785921 1130572 TRUE FALSE FALSE 1416184.191 1879384.346 2930827.314 831744.9435 2110487.717 1255068.781 982380.8502 1205870.095 1940726.07 847469.4124 1.671074106 2.217642688 3.458328136 0.981445385 2.490340873 1.480960566 1.159193283 1.422906925 2.290024916 1 19.69280177 -5.863365037 1.262786685 1.498991682 2.305682043 0.186336638 0.6761932 0.756194307 2.536394907 0.280549349 0.363720753 1.37E-06 5.863365037 0.806690361 GPVSGTEPEPVYS(ph)MEAADYR ddPTM_HeLa_A485_30min_R1 2 GPVSGTEPEPVYSMEAADYR 20 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 GPVSGTEPEPVYS(1)MEAADYR;GPVSGTEPEPVYS(1)MEAADYR ; 188.41 3.64E-19 302200000 167029 180926 202359 143680 218105 158687 166288 161658 146264 155264 TRUE FALSE FALSE 204184.0248 202083.7219 277220.015 151528.8746 196389.7004 166995.6059 130759.2104 122011.122 175617.8432 116559.5422 1.751757264 1.733738122 2.378355385 1.300012609 1.684887369 1.432706433 1.1218233 1.046770772 1.506679246 1 16.83070759 -6.036247687 1.002936287 1.166938571 1.897258723 0.544406412 0.26715114 0.409372462 0.88558342 0.136799454 0.156407914 9.20E-07 6.036247687 0.730320152 GPVSGTEPEPVYS(ph)MEAADYR ddPTM_HeLa_A486_30min_R1 2 GPVSGTEPEPVYSMEAADYR 20 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 GPVSGTEPEPVYS(1)MEAADYR;GPVSGTEPEPVYS(1)MEAADYR ; 287.09 3.75E-73 291910000 178420 178547 186180 41257 204409 156881 153404 163324 142373 154645 TRUE FALSE FALSE 165913.6794 164398.2855 258273.8821 96048.38101 178770.1172 137526.6173 115020.6967 126138.6905 154714.0063 115920.8854 1.431266495 1.418193838 2.228018541 0.828568387 1.542173496 1.186383427 0.992234456 1.088144643 1.334651695 1 16.82278099 -5.278884817 24.98038428 1.155225196 1.665063143 0.451373335 0.278798035 756.0650356 1082619.125 0.077467067 0.115197777 5.26E-06 5.278884817 0.509837947 GQAGASRPHAPGT(ph)PAGR ddPTM_HeLa_A485_30min_R1 1 GQAGASRPHAPGTPAGR 17 1 Q8TDD1-2 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 GQAGASRPHAPGT(1)PAGR 67.563 0.010591 27864000 37194 52815 64167 30984 67330 51539 49200 59433 53125 51121 TRUE FALSE FALSE 45467.67698 58991.25482 87905.04351 32676.57746 60626.38879 54237.50235 38688.01807 44856.96356 63786.70021 38377.47551 1.184749032 1.537132238 2.290537414 0.851451979 1.579738844 1.413263942 1.008091792 1.168835703 1.662086924 1 15.22797219 -5.283772417 24.94703182 1.259180792 1.6574391 0.238478601 0.351024405 1174.490086 1311956.895 0.09867114 0.146475832 5.20E-06 5.283772417 0.398258308 GQAGASRPHAPGT(ph)PAGR ddPTM_HeLa_A486_30min_R1 2 GQAGASRPHAPGTPAGR 17 1 Q8TDD1-2 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 GQAGASRPHAPGT(1)PAGR;GQAGASRPHAPGT(1)PAGR ; 91.337 0.0010143 82025000 115680 149925 153280 37785 189991 132032 143085 148518 139386 114997 TRUE FALSE FALSE 107571.4294 138044.397 212634.121 87965.38955 166160.5572 115743.2342 107283.6196 114703.6935 151468.0907 86201.0027 1.247913899 1.601424492 2.46672445 1.020468287 1.927594251 1.342713317 1.244575077 1.33065382 1.757149986 1 16.39541703 -6.306108552 23.7025441 1.350031327 1.660055237 0.135328267 0.400559545 544.5037105 288924.5909 0.138726222 0.12234603 4.94E-07 6.306108552 0.31002391 GQDVVQEWQET(ph)SPTREEPAGEQK ddPTM_HeLa_A486_30min_R1 2 GQDVVQEWQETSPTREEPAGEQK 23 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GQDVVQEWQET(0.58)S(0.414)PT(0.006)REEPAGEQK;GQDVVQEWQET(0.5)S(0.5)PT(0.001)REEPAGEQK ; 155.95 6.48E-10 685980000 481180 492460 376340 258420 627760 597400 739570 766830 477720 716940 TRUE FALSE FALSE 447451.7668 453435.6761 522068.9267 601614.8198 549020.4872 523698.8619 554521.7636 592239.5488 519129.1542 537413.5575 0.832602305 0.84373695 0.971447258 1.119463421 1.021597761 0.974480183 1.03183434 1.102018251 0.965977034 1 19.03567319 -4.852649309 3.535432159 1.033145246 0.834581515 0.725378173 0.04668131 0.110621865 2.667114542 0.012502885 0.030457836 1.40E-05 4.852649309 -0.198563731 GQDVVQEWQETS(ph)PTREEPAGEQK ddPTM_HeLa_A485_30min_R1 2 GQDVVQEWQETSPTREEPAGEQK 23 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GQDVVQEWQET(0.023)S(0.97)PT(0.007)REEPAGEQK;GQDVVQEWQET(0.206)S(0.792)PT(0.002)REEPAGEQK ; 282.58 2.13E-75 848160000 364860 361620 386370 576600 618350 524070 714190 653720 471920 828530 TRUE FALSE FALSE 446021.8482 403908.3133 529304.3412 608098.198 556784.9028 551509.4948 561597.4721 493394.145 566630.0153 621992.719 0.717085321 0.64937788 0.850981571 0.97766128 0.895163056 0.886681593 0.902900396 0.793247461 0.910991396 1 19.24653817 -4.860683232 4.765335192 0.89993689 0.68410758 0.719803974 0.055297518 0.102502136 3.865644895 0.014507926 0.032232219 1.38E-05 4.860683232 -0.21582931 GQEEISGALPVAS(ph)PASSR ddPTM_HeLa_A486_30min_R1 1 GQEEISGALPVASPASSR 18 0 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 0 GQEEISGALPVAS(0.996)PAS(0.002)S(0.002)R 192.25 1.34E-19 0 224770 257720 222450 85577 254620 200460 225830 243840 181570 210020 TRUE FALSE FALSE 209014.7837 237297.3286 308588.5974 199227.5808 222683.1854 175729.2833 169324.9454 188322.955 197308.6338 157429.625 1.327671229 1.507323216 1.960168535 1.26550248 1.414493526 1.116240246 1.075559606 1.19623581 1.253313243 1 17.26434753 -5.851546907 1.712288933 1.14109377 1.573893317 0.515914206 0.181379401 0.296647805 1.794536984 0.067460379 0.08364792 1.41E-06 5.851546907 0.432799547 GQEHKYLLGDAPVS(ph)PSSQK ddPTM_HeLa_A485_30min_R1 2 GQEHKYLLGDAPVSPSSQK 19 1 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 GQEHKYLLGDAPVS(0.992)PS(0.008)SQK;GQEHKYLLGDAPVS(0.999)PS(0.001)SQK ; 195.03 3.41E-19 507290000 366410 1580460 409490 126087 630020 1933330 1963320 5543100 408750 215468 TRUE FALSE FALSE 447916.6404 1765281.049 560977.3913 132974.8135 567292.9967 2034556.169 1543840.643 4183646.034 490782.3757 161755.793 2.769091803 10.91324778 3.468051319 0.822071414 3.507095395 12.57794934 9.544268026 25.86396417 3.034094586 1 17.30345786 -6.250291448 23.92860373 10 4.424557597 0.171065296 6.690448012 865.3451088 1857429.254 2.231724214 2.20979093 5.62E-07 6.250291448 -5.575442403 GQES(ph)FKK ddPTM_HeLa_A486_30min_R1 3 GQESFKK 7 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 GQES(1)FKK;GQES(1)FKK;GQES(1)FKK ;; 61.65 0.02002 2593040000 4736280 4398330 2545940 3433880 4144860 7359100 8067000 6895500 4637940 8741200 TRUE FALSE FALSE 4404291.23 4049790.312 3531796.151 7994246.179 3624973.01 6451209.064 6048551.276 5325545.178 5039960.373 6552346.624 0.672170061 0.618067167 0.539012411 1.220058498 0.553232791 0.984564681 0.923112226 0.812769147 0.769184029 1 22.64358025 -5.161286043 21.7580444 0.87788231 0.610573992 0.379228105 0.166090225 15.25949606 3309.444985 0.04250112 0.073614373 6.90E-06 5.161286043 -0.267308318 GQES(ph)PLKK ddPTM_HeLa_A485_30min_R1 2 GQESPLKK 8 1 A0A3B3ITL0;A0A3B3IRJ9;Q9Y2H2-4;Q9Y2H2 A0A3B3ITL0 INPP5F Phosphatidylinositide phosphatase SAC2 1 0 GQES(1)PLKK;GQES(1)PLKK ; 87.001 0.0026267 384440000 1175330 931250 592260 1844540 1151860 1174520 1830560 1741320 940700 2482400 TRUE FALSE FALSE 1436778.104 1040151.587 811361.62 1945302.55 1037176.774 1236016.051 1439445.902 1314258.54 1129489.861 1863583.365 0.77097603 0.558145992 0.435377153 1.043850565 0.556549706 0.663246986 0.772407572 0.705231955 0.606084966 1 20.82964793 -10.84390542 2.663081254 1.12334851 0.678541844 0.27404499 0.156686925 115572184 76348409.06 90844154.56 0.037909521 1.43E-11 10.84390542 -0.444806666 GQESFK(ac)K ddPTM_HeLa_A485_30min_R1 2 GQESFKK 7 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; GQESFK(1)K;GQESFK(1)K 150.05 0.0044127 105780000 43731 43653 51723 63373 72078 50250 75166 80607 87885 124966 FALSE TRUE FALSE 53458.81008 48757.83862 70857.49007 66834.90652 64901.66124 52881.0123 59106.17005 60838.00686 105522.7134 93814.27603 0.569836621 0.519727281 0.755295389 0.712417228 0.691810074 0.563677668 0.630033856 0.648494125 1.124804431 1 16.51751986 -7.755427397 24.99797767 1.062402285 0.638227892 0.84239218 0.073700774 48.7640256 202768.4758 0.055847209 0.019882848 1.76E-08 7.755427397 -0.424174393 GQESFK(ac)K ddPTM_HeLa_A486_30min_R1 2 GQESFKK 7 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; GQESFK(1)K;GQESFK(1)K 155.88 0.0037777 191107000 124307 190360 147442 60867 212550 196314 211200 209060 170040 187001 FALSE TRUE FALSE 115593.7212 175275.1803 204535.491 141701.452 185889.997 172094.7747 158355.5262 161461.6017 184779.2041 140174.7324 0.824640213 1.250404957 1.459146649 1.010891547 1.326130565 1.227716092 1.129700934 1.151859532 1.31820622 1 17.09686679 -9.632010646 13.95208156 1.000007608 1.195645306 0.10036391 0.168390106 0 0 0.157575079 0.03821757 2.33E-10 9.632010646 0.195637698 GQFQGRPVSVWDVLFSSYLSEAR ddPTM_HeLa_A485_30min_R1 2 GQFQGRPVSVWDVLFSSYLSEAR 23 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 268.36 1.60E-64 105168000 65660 89058 99174 59287 104742 77534 102189 75527 75222 98128 FALSE FALSE TRUE 80265.84048 99472.5584 135862.5896 62525.69869 94313.51871 81593.56035 80355.48534 57003.88483 90318.36542 73666.49551 1.089584076 1.35030936 1.844292831 0.848767113 1.280276984 1.107607465 1.090800978 0.773810189 1.226044008 1 16.16872099 -5.285533445 24.99164436 1.051434001 1.420286975 0.377748278 0.22414275 810.9651392 841174.3206 0.063106742 0.093656572 5.18E-06 5.285533445 0.368852974 GQFQGRPVSVWDVLFSSYLSEAR ddPTM_HeLa_A486_30min_R1 2 GQFQGRPVSVWDVLFSSYLSEAR 23 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 272.18 1.25E-64 89529000 62133 71870 78630 28073.2 91636 66397 89952 80993 68436 70289 FALSE FALSE TRUE 57777.79756 66174.75945 109077.6418 65355.82834 80142.15841 58205.61322 67445.05818 62552.66196 74368.08758 52688.1769 1.096598914 1.255969809 2.070248929 1.240426832 1.521065315 1.10471868 1.280079558 1.187223883 1.411475818 1 15.68519164 -6.255635492 24.74350739 1.213612328 1.451087501 0.168778731 0.264219803 814.5589982 3472683.457 0.089634464 0.087266907 5.55E-07 6.255635492 0.237475173 GQFQGRPVSVWDVLFSSYLSEARR ddPTM_HeLa_A485_30min_R1 2 GQFQGRPVSVWDVLFSSYLSEARR 24 2 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 339.42 1.30E-116 109557000 35801 114556 69982 15711.8 61943 85271 104741 160140 39484 23617 FALSE FALSE TRUE 43764.80894 127952.3277 95871.25399 16570.09585 55775.73742 89735.65771 82362.22969 120865.4139 47408.07663 17729.71654 2.468443804 7.21682873 5.407376581 0.934594516 3.14588997 5.061313728 4.645434095 6.81710921 2.673933141 1 14.11388185 -7.998783005 24.83941812 0.999999577 4.468545572 0.276164953 1.804757983 37.69399843 769327.7856 1.805605385 0.466205306 1.00E-08 7.998783005 3.468545995 GQFQGRPVSVWDVLFSSYLSEARR ddPTM_HeLa_A486_30min_R1 2 GQFQGRPVSVWDVLFSSYLSEARR 24 2 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 309.21 2.49E-99 34920000 33144 22965 25925 11294.3 40683 16213.7 30111 33447 16999.5 34907 FALSE FALSE TRUE 30820.77676 21145.16976 35963.8543 26293.70118 35580.15879 14213.41854 22576.90932 25831.84824 18473.03035 26166.05999 1.177891389 0.808114396 1.37444668 1.00487812 1.359782818 0.543200564 0.862831826 0.98722728 0.70599205 1 14.67540908 -6.255774845 24.99891264 0.821738392 1.131265513 0.405732422 0.196408936 503.6935175 2222919.175 0.063463472 0.061789136 5.55E-07 6.255774845 0.30952712 GQGESDPLDHEPAVS(ph)PLLPR ddPTM_HeLa_A485_30min_R1 4 GQGESDPLDHEPAVSPLLPR 20 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR ;;; 210.56 7.23E-27 5808300000 629892 990740 1039820 572831 1095680 913650 976710 1046040 897210 942290 TRUE FALSE FALSE 770009.3023 1106598.425 1424492.689 604123.307 986590.252 961487.3012 768027.9295 789497.0499 1077271.817 707394.4446 1.088514772 1.564330104 2.013717664 0.854011947 1.394681934 1.359195437 1.085713827 1.116063401 1.522872883 1 19.43215536 -5.272188857 24.993543 1.206386394 1.5564018 0.263764243 0.278670384 983.8615679 2287568.841 0.078051799 0.117091867 5.34E-06 5.272188857 0.350015405 GQGESDPLDHEPAVS(ph)PLLPR ddPTM_HeLa_A486_30min_R1 5 GQGESDPLDHEPAVSPLLPR 20 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR ;;;; 241.7 2.36E-46 6020175000 1586559 1759596 1783437 213885.2 2143645 1415082 1494070 1660099 1551455 1413463 TRUE FALSE FALSE 1475349.407 1620159.205 2474031.568 497935.5548 1874769.055 1240503.57 1120237.883 1282130.697 1685936.369 1059522.665 1.392466114 1.529140677 2.335043554 0.469962155 1.769446863 1.170813624 1.057304313 1.21010219 1.591222562 1 20.01498302 -5.252309328 24.99769235 1.208925911 1.72990908 0.29821695 0.39935684 896.4751607 2454505.57 0.105118145 0.178807063 5.59E-06 5.252309328 0.520983168 GQGPRS(ph)PHKVGR ddPTM_HeLa_A485_30min_R1 5 GQGPRSPHKVGR 12 2 Q86U38-2;Q86U38 Q86U38-2 NOP9 Nucleolar protein 9 1 0 GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR ;;;; 76.391 0.003754 6201690000 1493755 2386800 1631113 1262058 2439390 2711120 3319700 4983560 1645483 1819051 TRUE FALSE FALSE 1826035.646 2665915.498 2234529.575 1331001.033 2196515.766 2853070.051 2610418.976 3761334.096 1975716.345 1365595.063 1.337172121 1.952200597 1.636304667 0.974667432 1.608467859 2.089250414 1.911561521 2.754355371 1.446780527 1 20.38109832 -6.129664236 5.506834569 1.952042199 1.495368875 0.090557555 0.485094732 0.426717343 17.36219797 0.157499299 0.158055217 7.42E-07 6.129664236 -0.456673324 GQGPRS(ph)PHKVGR ddPTM_HeLa_A486_30min_R1 4 GQGPRSPHKVGR 12 2 Q86U38-2;Q86U38 Q86U38-2 NOP9 Nucleolar protein 9 1 0 GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR;GQGPRS(1)PHKVGR ;;; 74.338 0.0043104 2712620000 1675495 1219076 1005614 658237 1674122 1073673 1750708 1611829 912576 1822945 TRUE FALSE FALSE 1558051.453 1122471.978 1395014.672 1532409.001 1464138.008 941214.1416 1312662.341 1244850.723 991678.8225 1366467.707 1.14020364 0.821440545 1.020891065 1.121438139 1.07147648 0.688793549 0.960624488 0.910999006 0.725724302 1 20.38201993 -6.228405103 24.9745052 0.858127904 1.027228869 0.351053441 0.120672699 779.7210469 589483.4721 0.039470674 0.03946851 5.91E-07 6.228405103 0.169100965 GQGS(ph)SPVAMQK ddPTM_HeLa_A486_30min_R1 1 GQGSSPVAMQK 11 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 GQGS(0.5)S(0.5)PVAMQK 163.33 6.44E-08 2204700000 2395300 2847200 1960000 934340 3079100 2735500 3081400 3118200 2267900 2839600 TRUE FALSE FALSE 2227401.839 2621577.503 2718964.491 2175190.739 2692890.567 2398021.823 2310401.128 2408253.93 2464483.398 2128545.677 1.046443054 1.231628492 1.277381322 1.021914052 1.265131679 1.126601063 1.08543648 1.131408151 1.157825 1 21.02143662 -11.59179193 0.22878919 0.760988794 1.176696633 0.228336236 0.08261886 65.03236266 1.736957629 7.868911287 0.153253354 2.56E-12 11.59179193 0.41570784 GQGSS(ph)PVAMQK ddPTM_HeLa_A485_30min_R1 6 GQGSSPVAMQK 11 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 GQGS(0.048)S(0.952)PVAMQK;GQGS(0.002)S(0.998)PVAMQK;GQGS(0.002)S(0.998)PVAMQK;GQGS(0.045)S(0.955)PVAMQK;GQGS(0.048)S(0.952)PVAMQK;GQGS(0.019)S(0.981)PVAMQK ;;;;; 200.76 1.17E-14 4057750000 5108120 5458330 4990450 5793470 6821350 5718370 7186780 7517190 5606060 7533080 TRUE FALSE FALSE 6244403.671 6096634.212 6836625.125 6109952.596 6142192.443 6017775.011 5651265.742 5673587.366 6731144.82 5655221.792 1.104183691 1.078053954 1.208904863 1.080409013 1.086109912 1.064109461 0.999300461 1.003247543 1.190253021 1 22.43115218 -5.859507451 1.923775182 1.049244514 1.124673968 0.213873179 0.061704496 0.523286889 3.97701959 0.02197147 0.026707566 1.38E-06 5.859507451 0.075429454 GQGSS(ph)PVAMQK ddPTM_HeLa_A486_30min_R1 8 GQGSSPVAMQK 11 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 GQGS(0.112)S(0.888)PVAMQK;GQGS(0.033)S(0.967)PVAMQK;GQGS(0.115)S(0.885)PVAMQK;GQGS(0.01)S(0.99)PVAMQK;GQGS(0.2)S(0.8)PVAMQK;GQGS(0.02)S(0.98)PVAMQK;GQGS(0.093)S(0.907)PVAMQK;GQGS(0.011)S(0.989)PVAMQK ;;;;;;; 147.7 7.96E-07 3515734000 3736390 4142500 3114480 1453427 4710580 4056390 4737000 4783200 3327880 4661370 TRUE FALSE FALSE 3474488.356 3814233.213 4320490.065 3383651.508 4119735.132 3555953.844 3551752.497 3694169.777 3616343.318 3494132.612 0.994377931 1.091610891 1.236498595 0.968380964 1.179043726 1.01769287 1.016490469 1.057249448 1.034975978 1 21.73650293 GQGT(ph)PPSGPGVVR ddPTM_HeLa_A485_30min_R1 3 GQGTPPSGPGVVR 13 0 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 GQGT(0.605)PPS(0.395)GPGVVR;GQGT(0.953)PPS(0.047)GPGVVR;GQGT(0.948)PPS(0.052)GPGVVR ;; 120.77 0.00040192 662670000 871870 1302120 1343340 871500 1472940 1153270 1350520 1484530 1155050 1137460 TRUE FALSE FALSE 1065814.474 1454391.607 1840297.367 919107.8382 1326288.922 1213653.434 1061970.369 1120446.69 1386857.94 853912.1554 1.248154704 1.703209865 2.155136633 1.076349402 1.55319129 1.421286049 1.243652948 1.312133435 1.624122495 1 19.70372814 -5.281447933 24.95021512 1.342602961 1.702271471 0.291725255 0.272045759 1025.51928 1278797.12 0.07576509 0.112541169 5.23E-06 5.281447933 0.35966851 GQGT(ph)PPSGPGVVR ddPTM_HeLa_A486_30min_R1 3 GQGTPPSGPGVVR 13 0 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 GQGT(0.793)PPS(0.207)GPGVVR;GQGT(0.998)PPS(0.002)GPGVVR;GQGT(0.98)PPS(0.02)GPGVVR ;; 111.07 0.00061772 468940000 1165970 1345260 1198050 316687 1526990 1051130 1165320 1263740 1036550 1100810 TRUE FALSE FALSE 1084241.524 1238656.698 1661967.045 737263.3405 1335460.676 921452.2677 873744.6105 976013.9893 1126398.989 825160.0109 1.313977301 1.501110914 2.014114866 0.893479241 1.618426315 1.116695254 1.058879004 1.182817849 1.365067349 1 19.65431438 -5.271486211 24.99902879 1.195121407 1.598872034 0.385031893 0.250028417 737.4856348 1835046.935 0.069258761 0.104089325 5.35E-06 5.271486211 0.403750627 GQHEPSKPPPAGETVTGGFGAK(ac)K ddPTM_HeLa_A486_30min_R1 1 GQHEPSKPPPAGETVTGGFGAKK 23 2 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 1 GQHEPSKPPPAGETVTGGFGAK(1)K 80.752 0.0015511 4532600 10105 10270 7294.2 3030.9 12092 10936 10702 11152 8530.5 9622.2 FALSE TRUE FALSE 9396.691682 9456.167797 10118.70959 7056.088373 10575.30861 9586.827509 8024.246406 8612.933046 9269.930608 7212.73849 1.302791124 1.311037106 1.402894282 0.978281465 1.466198812 1.329152238 1.112510375 1.194128008 1.285216513 1 12.8163314 -14 0.153112396 0.034088031 1.342304284 0.285242316 0.13127512 178.0209678 1.600802095 52.06008832 0.628792856 1.00E-14 14 1.308216253 GQHHQQQQAAGGSESHPVPPTAPLT(ph)PLLHGEGASQQPR ddPTM_HeLa_A485_30min_R1 3 GQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPR 38 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 GQHHQQQQAAGGSESHPVPPT(0.002)APLT(0.998)PLLHGEGASQQPR;GQHHQQQQAAGGSESHPVPPTAPLT(1)PLLHGEGASQQPR;GQHHQQQQAAGGSESHPVPPTAPLT(1)PLLHGEGASQQPR ;; 326.49 8.60E-130 5400800000 576056 931780 1191010 337493 1217780 527890 742030 690600 702000 578720 TRUE FALSE FALSE 704197.6698 1040743.566 1631614.161 355929.388 1096533.547 555529.5041 583489.2287 521229.2672 842884.9609 434455.7546 1.620873156 2.395511061 3.755535849 0.819253478 2.523924556 1.278679125 1.343034872 1.199729228 1.940093904 1 18.72884973 -5.27948107 24.99951739 1.485813082 2.571127341 0.382118718 0.666794247 858.2505787 1189235.209 0.185555658 0.27583586 5.25E-06 5.27948107 1.085314259 GQHHQQQQAAGGSESHPVPPTAPLT(ph)PLLHGEGASQQPR ddPTM_HeLa_A486_30min_R1 2 GQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPR 38 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 GQHHQQQQAAGGSESHPVPPT(0.001)APLT(0.999)PLLHGEGASQQPR;GQHHQQQQAAGGSESHPVPPT(0.164)APLT(0.836)PLLHGEGASQQPR ; 249.96 1.19E-52 1900120000 364773 382061 513502 109127 551689 314171 391140 399193 410781 220607 TRUE FALSE FALSE 339204.2964 351785.0949 712343.7265 254053.171 482491.0213 275411.7763 293272.6349 308305.4682 446387.8278 165365.5713 2.051238923 2.127317628 4.307690657 1.536312359 2.917723548 1.665472287 1.773480614 1.864387283 2.699400028 1 17.33529937 -6.267632365 24.81145965 1.852880519 2.599565001 0.199626015 0.784771474 823.6880844 3299996.853 0.268518713 0.242789678 5.40E-07 6.267632365 0.746684483 GQHVPGSPFQFTVGPLGEGGAHK ddPTM_HeLa_A485_30min_R1 2 GQHVPGSPFQFTVGPLGEGGAHK 23 0 Q60FE5;P21333-2;P21333;H0Y5C6;Q14315-2;Q14315 Q60FE5;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C 0 0 ; ; 214.31 1.68E-35 31923000 62033 49664 60735 74077 75586 57105 70837 54863 63767 97769 FALSE FALSE TRUE 75832.02684 55471.77278 83203.40389 78123.63894 68060.39244 60094.9295 55702.09626 41407.76323 76564.45199 73396.98761 1.033176283 0.755777241 1.133607885 1.064398438 0.92729136 0.818765612 0.758915292 0.564161617 1.043155237 1 16.16343323 -6.160369592 3.353794394 0.803802041 0.989603858 0.175610925 0.154534514 0.381511824 8.108347956 0.053504847 0.053177577 6.91E-07 6.160369592 0.185801817 GQHVPGSPFQFTVGPLGEGGAHK ddPTM_HeLa_A486_30min_R1 2 GQHVPGSPFQFTVGPLGEGGAHK 23 0 Q60FE5;P21333-2;P21333;H0Y5C6;Q14315-2;Q14315 Q60FE5;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C 0 0 ; ; 207.17 8.30E-30 38585000 30117 52468 45033 11086.2 58174 49402 55592 49373 50054 42041 FALSE FALSE TRUE 28005.95382 48310.24459 62470.98363 25809.23387 50877.27447 43307.28352 41682.29361 38131.84571 54392.72102 31513.65996 0.888692518 1.532993777 1.982346186 0.818985605 1.614451464 1.37423846 1.322673839 1.210010064 1.726004567 1 14.9436897 -10.70698414 2.759298719 0.939453578 1.390202612 0.104169779 0.338992542 51621667.93 41358360.26 21572120.89 0.083638183 1.96E-11 10.70698414 0.450749034 GQHVTGSPFQFTVGPLGEGGAHK ddPTM_HeLa_A486_30min_R1 1 GQHVTGSPFQFTVGPLGEGGAHK 23 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;H7C5L4 O75369-8 FLNB Filamin-B 0 0 77.543 0.0018123 11932000 23113 30293 23929 9046.4 36388 31015 36569 32711 31031 31373 FALSE FALSE TRUE 21492.89806 27892.47235 33194.94964 21060.47638 31823.87774 27188.68464 27419.04941 25263.41938 33720.79206 23516.9966 0.913930398 1.186055891 1.411530146 0.895542775 1.353228828 1.156129122 1.165924794 1.074262152 1.433890247 1 14.5214162 -4.262366519 8.257714311 1.19032187 0.912054856 0.19608404 0.165273755 0.134608296 131.6037784 0.038139869 0.214255185 5.47E-05 4.262366519 -0.278267014 GQK(ac)APAQK ddPTM_HeLa_A485_30min_R1 2 GQKAPAQK 8 1 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 ; GQK(1)APAQK;GQK(1)APAQK 147.52 0.0013648 37169000 25001.5 29623.3 15688.2 27121.4 17877.6 28888.5 26130.6 41953 28239.2 43678 FALSE TRUE FALSE 30562.99742 33087.48725 21491.91802 28602.97341 16097.64337 30401.05719 20547.58384 31663.96097 33906.54841 32789.87843 0.932086329 1.00907624 0.655443663 0.872311054 0.490933304 0.927147603 0.626644099 0.965662652 1.034055325 1 15.00096293 -7.450956363 8.129458897 1.011584089 0.788412227 0.296334302 0.151201766 0.391866114 40.75772592 0.082916593 0.039421935 3.54E-08 7.450956363 -0.223171861 GQKPALDCSQVS(ph)PPRPAT(ph)SPENNASLSDTSPMDSSPSGIPK ddPTM_HeLa_A485_30min_R1 3 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 GQKPALDCS(0.164)QVS(0.833)PPRPAT(0.451)S(0.42)PENNAS(0.069)LS(0.06)DT(0.002)S(0.001)PMDSSPSGIPK;GQKPALDCS(0.049)QVS(0.95)PPRPAT(0.542)S(0.455)PENNAS(0.003)LSDTSPMDSSPSGIPK;GQKPALDCS(0.016)QVS(0.978)PPRPAT(0.529)S(0.469)PENNAS(0.007)LS(0.002)DTSPMDSSPSGIPK ;; 181.18 2.48E-21 1359830000 399148 364091 329941 481815 482110 471428 627346 589694 396941 675646 TRUE FALSE FALSE 487937.0956 406668.2753 451999.9059 508135.3334 434109.4356 496111.2411 493308.4022 445070.6219 476603.4177 507219.8865 0.96198337 0.801759328 0.891132067 1.001804832 0.855860441 0.978098955 0.97257307 0.877470765 0.939638666 1 18.95225178 -5.017752801 24.52854611 0.940510786 0.873014939 0.1832923 0.058197952 851.9014875 1177052.688 0.014930987 0.026589165 9.60E-06 5.017752801 -0.067495847 GQKPALDCSQVS(ph)PPRPAT(ph)SPENNASLSDTSPMDSSPSGIPK ddPTM_HeLa_A486_30min_R1 1 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 GQKPALDCS(0.031)QVS(0.964)PPRPAT(0.429)S(0.395)PENNAS(0.056)LS(0.056)DT(0.056)S(0.012)PMDSSPSGIPK 91.759 0.00025432 863270000 232000 236780 150070 100500 203830 229860 251690 284490 201050 333720 TRUE FALSE FALSE 215737.998 218016.6905 208181.123 233969.079 178263.7408 201502.2102 188714.4999 219717.8374 218477.1759 250154.3398 0.862419569 0.871528715 0.832210719 0.9352989 0.712615023 0.805511551 0.754392268 0.878329105 0.873369521 1 17.93245896 -8.161535142 1.615417983 0.998935811 0.827532109 0.423685545 0.059769819 0.632133176 3.262477912 0.058967253 0.016994223 6.89E-09 8.161535142 -0.171403702 GQKPALDCSQVS(ph)PPRPATSPENNASLS(ph)DTSPMDSSPSGIPK ddPTM_HeLa_A486_30min_R1 1 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 GQKPALDCS(0.454)QVS(0.523)PPRPAT(0.249)S(0.249)PENNAS(0.223)LS(0.252)DT(0.043)S(0.007)PMDSSPSGIPK 72.299 0.00059212 134560000 38023 40597 24326 19242 37747 41874 46372 44193 34935 53173 TRUE FALSE FALSE 35357.78405 37379.94587 33745.67867 44796.34844 33012.41928 36708.01162 34769.23513 34131.21863 37963.19393 39858.1347 0.887090786 0.937824766 0.846644704 1.123894753 0.828247973 0.920966621 0.872324693 0.856317509 0.952457866 1 15.28258658 GQKPALDCSQVS(ph)PPRPATSPENNASLSDTSPMDSSPSGIPK ddPTM_HeLa_A485_30min_R1 2 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 GQKPALDCS(0.02)QVS(0.975)PPRPAT(0.003)S(0.003)PENNASLSDTSPMDSSPSGIPK;GQKPALDCS(0.109)QVS(0.883)PPRPAT(0.004)S(0.004)PENNASLSDTSPMDSSPSGIPK ; 180.62 2.22E-22 1997000000 563980 524520 429530 656090 660630 626200 840930 726660 599480 951260 TRUE FALSE FALSE 689435.4053 585858.0513 588431.0212 691930.5354 594855.3576 658986.8637 661258.4357 548445.4956 719790.1372 714128.3886 0.965422207 0.820381966 0.823984917 0.968916159 0.83298097 0.922784858 0.925965759 0.767992849 1.007928194 1 19.44582395 -7.806632257 24.98335178 1.003964955 0.879343412 0.382513468 0.063729524 148.1160502 81877.29021 0.058493694 0.015103248 1.56E-08 7.806632257 -0.124621544 GQKPALDCSQVS(ph)PPRPATSPENNASLSDTSPMDSSPSGIPK ddPTM_HeLa_A486_30min_R1 2 GQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPK 41 2 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 GQKPALDCS(0.031)QVS(0.948)PPRPAT(0.01)S(0.01)PENNASLSDTSPMDSSPSGIPK;GQKPALDCS(0.026)QVS(0.965)PPRPAT(0.004)S(0.004)PENNAS(0.001)LSDTSPMDSSPSGIPK ; 209.26 4.66E-31 2041750000 1193090 1172140 724150 429740 1146740 1317430 1473720 1429820 1023110 1586450 TRUE FALSE FALSE 1109460.552 1079255.358 1004560.273 1000456.438 1002905.176 1154898.881 1104979.669 1104281.199 1111793.999 1189192.594 0.932952793 0.907553043 0.844741448 0.841290505 0.843349665 0.971162188 0.929184788 0.92859744 0.934915004 1 20.18155095 -6.263649806 24.98224324 0.946835031 0.872402631 0.567535881 0.034181294 172.0193263 1944150.477 0.012590197 0.011649087 5.45E-07 6.263649806 -0.074432401 GQKS(ph)PGALETPSAAGSQGNTASQGK ddPTM_HeLa_A485_30min_R1 2 GQKSPGALETPSAAGSQGNTASQGK 25 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 GQKS(1)PGALETPSAAGSQGNTASQGK;GQKS(0.999)PGALET(0.001)PSAAGSQGNTASQGK ; 109.2 3.64E-08 529050000 549510 660080 557230 528900 962840 793150 993680 1330020 663840 785670 TRUE FALSE FALSE 671746.6037 737270.6141 763372.5653 557792.4678 866976.2689 834678.1076 781372.1504 1003830.51 797066.5989 589816.9282 1.138906958 1.249999074 1.294253401 0.945704406 1.469907403 1.415147765 1.324770642 1.701935739 1.351379658 1 19.1699077 -5.792456431 24.99820411 1.41156396 1.173631429 0.240042335 0.184881337 254.5215884 205130.4381 0.054995912 0.062365726 1.61E-06 5.792456431 -0.237932531 GQKYFDS(ph)GDYNMAK ddPTM_HeLa_A485_30min_R1 2 GQKYFDSGDYNMAK 14 1 O43768-2;O43768;O43768-6;O43768-5;P56211;H3BMD8;P56211-2;H3BTD3 O43768-2;P56211 ENSA;ARPP19 Alpha-endosulfine;cAMP-regulated phosphoprotein 19 1 0 GQKYFDS(1)GDYNMAK;GQKYFDS(1)GDYNMAK ; 220.82 5.02E-28 652500000 250780 1004940 257360 123824 596650 1767310 2254900 8243100 368150 276790 TRUE FALSE FALSE 306565.1458 1122458.991 352568.1736 130588.1916 537245.431 1859843.619 1773122.194 6221466.8 442034.3281 207791.3469 1.475350876 5.401856274 1.696741365 0.628458276 2.585504348 8.950534496 8.533185911 29.94093302 2.127299017 1 17.66477605 -6.300946652 3.692884979 10 2.33876935 0.213798992 7.458667642 0.421418518 12.19942082 2.738810199 2.475805247 5.00E-07 6.300946652 -7.66123065 GQNLLLTNLQTIQGILER ddPTM_HeLa_A486_30min_R1 1 GQNLLLTNLQTIQGILER 18 0 P12270 P12270 TPR Nucleoprotein TPR 0 0 79.875 0.014369 1908600 2062.9 2930.2 3021 702.45 4081.6 2606.6 2446.1 2528.4 1820.8 3092.2 FALSE FALSE TRUE 1918.301363 2698.00028 4190.812105 1635.3391 3569.647669 2285.024194 1834.059908 1952.738515 1978.62841 2317.892993 0.827605661 1.163988281 1.808026564 0.705528299 1.540039889 0.985819536 0.791261682 0.842462754 0.853632336 1 11.17859825 -6.511163146 23.42878529 0.862972341 1.216948463 0.223183108 0.299020309 359.8234939 719578.2765 0.106155248 0.088505736 3.08E-07 6.511163146 0.353976122 GQPEGPLPSS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 GQPEGPLPSSSPR 13 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 GQPEGPLPS(0.091)S(0.454)S(0.454)PR 79.875 0.0053956 182680000 437630 492460 471360 149670 599040 371470 481980 512820 414380 404170 TRUE FALSE FALSE 406954.3969 453435.6761 653883.2155 348439.3239 523902.8174 325641.8082 361383.5061 396062.0808 450298.792 302963.2013 1.343246953 1.496669147 2.158292534 1.150104443 1.729262218 1.074855979 1.192829705 1.307294348 1.486315137 1 18.20878305 -6.260842107 24.99998679 1.230250596 1.579877335 0.303094436 0.274694423 74.74356204 3128582.801 0.092747153 0.087519394 5.48E-07 6.260842107 0.349626739 GQPEGPLPSSS(ph)PR ddPTM_HeLa_A485_30min_R1 6 GQPEGPLPSSSPR 13 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 GQPEGPLPSSS(1)PR;GQPEGPLPSS(0.019)S(0.981)PR;GQPEGPLPS(0.002)S(0.075)S(0.923)PR;GQPEGPLPSS(0.023)S(0.977)PR;GQPEGPLPSS(0.118)S(0.882)PR;GQPEGPLPS(0.001)S(0.081)S(0.918)PR ;;;;; 221.24 2.25E-27 4932990000 2552250 4242160 4209730 2480830 4050090 3503910 3746030 4127970 3326340 3158670 TRUE FALSE FALSE 3119989.207 4738243.71 5767084.308 2616351.461 3646848.819 3687369.31 2945660.088 3115578.885 3993905.927 2371271.7 1.315745137 1.998186758 2.432063904 1.103353724 1.53792955 1.555017634 1.242227994 1.313885239 1.684288615 1 21.17722955 -5.277570257 24.98762308 1.373298701 1.923617478 0.396029782 0.319899817 808.6211608 1252597.141 0.08957335 0.133317084 5.28E-06 5.277570257 0.550318777 GQPEGPLPSSS(ph)PR ddPTM_HeLa_A486_30min_R1 5 GQPEGPLPSSSPR 13 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 GQPEGPLPSS(0.003)S(0.997)PR;GQPEGPLPSS(0.014)S(0.986)PR;GQPEGPLPSS(0.086)S(0.914)PR;GQPEGPLPSS(0.035)S(0.965)PR;GQPEGPLPS(0.001)S(0.177)S(0.822)PR ;;;; 184.98 3.34E-17 3527480000 3934310 4610930 4159880 1146310 5076430 3791310 4011480 4220450 3640050 4145920 TRUE FALSE FALSE 3658535.186 4245543.114 5770696.941 2668667.611 4439696.814 3323576.719 3007765.275 3259545.667 3955572.465 3107754.647 1.177227807 1.366112707 1.856870184 0.858712452 1.428586654 1.069446304 0.967825848 1.048842665 1.272807192 1 21.56744118 -5.277935393 24.99862039 1.102223547 1.456674542 0.382439119 0.217668144 862.2334423 1306656.084 0.061028142 0.090811403 5.27E-06 5.277935393 0.354450995 GQPEGPLPSSS(ph)PRS(ph)PSGLRPR ddPTM_HeLa_A485_30min_R1 1 GQPEGPLPSSSPRSPSGLRPR 21 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 2 0 GQPEGPLPS(0.318)S(0.36)S(0.403)PRS(0.885)PS(0.035)GLRPR 87.952 0.00082279 199840000 50300 83241 102010 70677 149050 89807 109490 131380 85039 92684 TRUE FALSE FALSE 61489.06147 92975.31085 139747.744 74537.90555 134210.0587 94509.15565 86096.56705 99158.849 102105.5473 69579.58452 0.883722746 1.336244122 2.008459018 1.071261147 1.928871228 1.358288589 1.237382598 1.425114129 1.46746417 1 16.08637644 -6.506298083 24.72602779 1.315047646 1.469439916 0.043121155 0.340822987 2435.756042 3632347.457 0.120876027 0.103833549 3.12E-07 6.506298083 0.15439227 GQPIYIQFSNHK ddPTM_HeLa_A485_30min_R1 2 GQPIYIQFSNHK 12 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;K7EKJ7;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 ; ; 234.92 2.37E-29 229270000 168498 340040 325780 76917 383710 236670 299070 338830 274570 193597 FALSE FALSE TRUE 205979.7988 379804.72 446299.5788 81118.78095 345506.4851 249061.6752 235171.2513 255731.4112 329673.6805 145336.8308 1.417258087 2.613272341 3.070794763 0.558143318 2.377280991 1.713685883 1.618111872 1.759577458 2.268342296 1 17.14904083 -11.09612166 0.202801409 1.95E-17 2.137938674 0.137361944 0.668728819 73.80263596 2.123511709 39.06431758 1.771629221 8.01E-12 11.09612166 2.137938674 GQPIYIQFSNHK ddPTM_HeLa_A486_30min_R1 2 GQPIYIQFSNHK 12 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;K7EKJ7;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 ; ; 248.32 8.31E-31 129419000 211660 235760 207722 7582.2 253220 145837 182638 168091 200367 75706 FALSE FALSE TRUE 196823.727 217077.519 288157.5214 17651.74478 221458.7864 127845.1137 136940.0407 129820.3487 217734.9729 56748.72484 3.46833744 3.825240472 5.077779672 0.31105095 3.902445157 2.252827955 2.413094586 2.28763464 3.836825823 1 15.79230035 -5.233688592 24.99998675 2.411151131 4.093931185 0.365209486 1.101368516 833.7428099 751096.9194 0.282747007 0.489591941 5.84E-06 5.233688592 1.682780053 GQS(ph)PLAPLLETLEDPSASHGGQTDAYLTLTSR ddPTM_HeLa_A485_30min_R1 2 GQSPLAPLLETLEDPSASHGGQTDAYLTLTSR 32 0 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 GQS(0.994)PLAPLLET(0.005)LEDPSASHGGQTDAYLTLTSR;GQS(0.996)PLAPLLET(0.004)LEDPSASHGGQTDAYLTLTSR ; 58.804 0.011072 93236000 9550.5 8664 11158.4 6271.3 14202.7 10728.4 10514.3 14139.5 13750.8 12294.9 TRUE FALSE FALSE 11674.97578 9677.179433 15286.3565 6613.885239 12788.62932 11290.12243 8267.833911 10671.76546 16510.45943 9230.007701 1.264893395 1.048447601 1.656158586 0.71656335 1.385549149 1.22319751 0.895755906 1.15620331 1.788780678 1 13.17211614 GQS(ph)PLAPLLETLEDPSASHGGQTDAYLTLTSR ddPTM_HeLa_A486_30min_R1 1 GQSPLAPLLETLEDPSASHGGQTDAYLTLTSR 32 0 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 GQS(1)PLAPLLETLEDPSASHGGQTDAYLTLTSR 79.941 0.00056286 64702000 14104 19310 14594 5313.3 20176 15875 18812 21705 16673 14657 TRUE FALSE FALSE 13115.38243 17779.80527 20245.18764 12369.63092 17645.33795 13916.50391 14105.03863 16763.24532 18118.22906 10986.7918 1.193740873 1.618289087 1.842684199 1.125863778 1.606050089 1.266657652 1.283817777 1.525763446 1.649091873 1 13.42348255 -5.267857099 24.9970691 1.377250965 1.558243155 0.118373765 0.243341554 1195.968831 4658305.911 0.067132767 0.10237638 5.40E-06 5.267857099 0.18099219 GQS(ph)PLPR ddPTM_HeLa_A486_30min_R1 1 GQSPLPR 7 0 H3BTS1;H3BN52;Q9BQ65-3;Q9BQ65-2;Q9BQ65 H3BTS1 USB1 U6 snRNA phosphodiesterase 1 0 GQS(1)PLPR 64.191 0.029351 204230000 81410 104950 99972 25720 125790 80080 71302 98036 89412 72676 TRUE FALSE FALSE 75703.5794 96633.37978 138683.8357 59877.45982 110012.2453 70200.54379 53461.48544 75715.34291 97162.30415 54477.45656 1.389631311 1.773823263 2.545710547 1.09912363 2.019408618 1.288616397 0.981350614 1.389847245 1.783532314 1 15.73337173 -6.282225188 23.26117494 1.293827199 1.772319398 0.25139199 0.411323005 500.0244649 559568.9699 0.14448832 0.127612717 5.22E-07 6.282225188 0.478492199 GQS(ph)PPSKDGSGDYQSR ddPTM_HeLa_A485_30min_R1 2 GQSPPSKDGSGDYQSR 16 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GQS(0.924)PPS(0.061)KDGS(0.014)GDYQSR;GQS(0.98)PPS(0.019)KDGSGDYQSR ; 109.5 0.00010008 730210000 544530 542650 490750 560780 672440 654820 799020 822040 559790 907690 TRUE FALSE FALSE 665658.8199 606108.1971 672298.8468 591413.9914 605489.5125 689105.3627 628302.8496 620433.4011 672134.7183 681419.5878 0.976870686 0.889478682 0.986615088 0.867914574 0.888570748 1.011279064 0.922049881 0.910501271 0.986374226 1 19.37818389 -6.238361757 24.93120192 0.957697795 0.920686542 0.175166477 0.046124312 1635.094382 1766425.5 0.015081074 0.0150734 5.78E-07 6.238361757 -0.037011252 GQS(ph)PPSKDGSGDYQSR ddPTM_HeLa_A486_30min_R1 3 GQSPPSKDGSGDYQSR 16 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GQS(0.941)PPS(0.058)KDGS(0.001)GDYQSR;GQS(0.992)PPS(0.007)KDGSGDYQSR;GQS(0.786)PPS(0.207)KDGS(0.005)GDYQS(0.001)R ;; 138.28 2.21E-06 993640000 1046361 1105432 803762 438876 1293330 1122119 1336980 1335990 936272 1356180 TRUE FALSE FALSE 973016.4973 1017833.542 1115000.172 1021725.508 1131108.492 983683.3667 1002453.463 1031814.241 1017428.811 1016583.701 0.957143516 1.001229453 1.096810987 1.005057928 1.112656529 0.967636375 0.986100271 1.014982082 1.000831324 1 19.95529757 GQS(ph)QLS(ph)NPTDDSWK ddPTM_HeLa_A485_30min_R1 2 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 GQS(1)QLS(0.994)NPT(0.006)DDSWK;GQS(1)QLS(0.997)NPT(0.003)DDSWK ; 148.44 5.95E-07 0 333140 306629 258554 490670 382283 310244 362381 302953 309902 625990 TRUE FALSE FALSE 407245.8437 342486.5942 354203.8839 517474.0597 344221.5622 326487.8961 284955.339 228653.3017 372096.4888 469942.2135 0.866587065 0.728784485 0.753717955 1.101144023 0.732476361 0.694740516 0.606362508 0.486556209 0.791792008 1 18.84212384 -5.985035564 24.98596536 0.681027136 0.854176468 0.151221168 0.156382994 374.7441214 625702.9935 0.04811874 0.054542335 1.04E-06 5.985035564 0.173149332 GQS(ph)QLS(ph)NPTDDSWK ddPTM_HeLa_A486_30min_R1 2 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 GQS(1)QLS(0.991)NPT(0.009)DDSWK;GQS(1)QLS(0.998)NPT(0.002)DDSWK ; 154.39 3.87E-07 71033000 629700 761780 547710 280880 723990 796080 835630 811500 669340 965680 TRUE FALSE FALSE 585561.2818 701413.7784 759797.9802 653902.8349 633180.4233 697867.7435 626546.5356 626739.1649 727358.9301 723867.4425 0.808934409 0.968980973 1.049636903 0.903346105 0.874718748 0.964082237 0.865554242 0.865820353 1.00482338 1 19.465366 -7.784845512 24.75458502 1.002411879 0.917651373 0.234283647 0.06441286 389.1645166 411571.7271 0.064056949 0.016582331 1.64E-08 7.784845512 -0.084760506 GQS(ph)QTSPDHRSDTSSPEVR ddPTM_HeLa_A486_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GQS(0.377)QT(0.306)S(0.306)PDHRS(0.01)DT(0.001)S(0.001)S(0.001)PEVR 59.814 0.010337 54391000 26872 23154 28270 2977.7 37687 15053 23660 20940 17248 12608 TRUE FALSE FALSE 24988.41157 21319.19271 39216.9011 6932.236085 32959.94504 13195.91391 17740.01775 16172.41912 18743.07053 9450.874736 2.644031613 2.255790423 4.149552522 0.73350206 3.487502053 1.396263761 1.877076805 1.711208705 1.983210132 1 13.20623215 -6.532276591 0.247086667 0.905992755 3.263586002 0.250127453 0.875744576 4.281878649 0.693121425 1.783004247 3.492214492 2.94E-07 6.532276591 2.357593246 GQSIAASLSHS(ph)AGNISALADKGDTMFTPAVSSR ddPTM_HeLa_A485_30min_R1 1 GQSIAASLSHSAGNISALADKGDTMFTPAVSSR 33 1 A0A087WU78;A0A087WWC4;Q6T4R5-4;Q6T4R5-3;Q6T4R5-2;Q6T4R5 A0A087WU78 NHS Nance-Horan syndrome protein 1 0 GQSIAASLS(0.001)HS(0.999)AGNISALADKGDTMFTPAVSSR 155.53 3.66E-10 148190000 42730 56034 43447 27738 51391 53605 72427 72853 48099 74628 TRUE FALSE FALSE 52235.14108 62586.68887 59519.85328 29253.2567 46274.3316 56411.67491 56952.37978 54985.68752 57752.02811 56024.61303 0.932360587 1.117128446 1.062387584 0.522150089 0.825964323 1.006908783 1.016559985 0.981455909 1.030833146 1 15.77377316 -6.288663761 21.78008788 1.006580697 0.893424418 0.128942783 0.149621524 384.3022675 307446.687 0.058720791 0.051814443 5.14E-07 6.288663761 -0.113156279 GQSQLS(ph)NPTDDSWK ddPTM_HeLa_A485_30min_R1 1 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GQS(0.005)QLS(0.995)NPTDDSWK 145.55 8.51E-08 342120000 380520 328940 317290 486120 482770 419850 531070 443520 433850 720450 TRUE FALSE FALSE 465165.3612 367406.6716 434668.7745 512675.5047 434703.7237 441832.6968 417602.5561 334746.0246 520919.7155 540855.0739 0.860055463 0.679307063 0.803669588 0.947898114 0.803734207 0.816915137 0.772115445 0.618920004 0.963141035 1 19.04488254 -7.963695847 18.43095248 1.000000062 0.79104588 0.454409867 0.085338009 7.991744239 4056.725674 0.084352162 0.021779753 1.09E-08 7.963695847 -0.208954182 GQSQLS(ph)NPTDDSWK ddPTM_HeLa_A486_30min_R1 3 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GQSQLS(0.987)NPT(0.013)DDSWK;GQSQLS(0.983)NPT(0.017)DDSWK;GQSQLS(0.997)NPT(0.003)DDSWK ;; 193.54 5.33E-18 830120000 935610 1067860 667990 306864 1002030 1033950 1112030 1178270 847260 1159160 TRUE FALSE FALSE 870028.5705 983238.8845 926653.6174 714394.9 876346.0538 906391.7614 833788.3321 910003.6425 920701.179 868898.7911 1.001300243 1.131591958 1.066468991 0.822184249 1.008570921 1.043149986 0.959592004 1.047306835 1.059618437 1 19.72882862 -5.03869548 24.99979572 0.991097706 1.074592483 0.192024069 0.070066838 795.9196904 514214.854 0.019369115 0.033558114 9.15E-06 5.03869548 0.083494777 GQSQT(ph)SPDHRS(ph)DT(ph)SS(ph)PEVR ddPTM_HeLa_A485_30min_R1 2 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 GQS(0.102)QT(0.473)S(0.426)PDHRS(0.879)DT(0.622)S(0.534)S(0.964)PEVR;GQS(0.076)QT(0.492)S(0.433)PDHRS(0.961)DT(0.595)S(0.477)S(0.966)PEVR ; 82.65 0.00085771 8696400000 558800 926110 957640 730040 999300 862880 976920 1104280 844560 870320 TRUE FALSE FALSE 683103.1322 1034410.508 1311910.887 769920.2366 899806.1832 908059.0625 768193.0613 833453.5986 1014055.445 653365.2411 1.045514957 1.583204069 2.007928804 1.178391791 1.377187103 1.389818444 1.175748284 1.275631984 1.552049882 1 19.31753018 GQSQT(ph)SPDHRS(ph)DT(ph)SS(ph)PEVR ddPTM_HeLa_A486_30min_R1 2 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 GQS(0.1)QT(0.482)S(0.418)PDHRS(0.853)DT(0.591)S(0.591)S(0.964)PEVR;GQS(0.121)QT(0.475)S(0.404)PDHRS(0.836)DT(0.657)S(0.526)S(0.982)PEVR ; 71.678 0.0024799 7118600000 524860 637690 602060 194901 741910 578160 595610 627070 529800 534260 TRUE FALSE FALSE 488070.0244 587157.122 835193.7557 453739.3778 648852.7298 506832.4975 446582.0783 484299.8498 575723.4906 400477.8186 1.218719244 1.466141431 2.085493171 1.132995029 1.620196425 1.265569462 1.115123129 1.209305054 1.437591457 1 18.61136281 -6.385238887 5.237796821 1.20600265 1.513302414 0.250280841 0.26030281 0.347834986 13.44640435 0.093316359 0.081698988 4.12E-07 6.385238887 0.307299764 GQSQT(ph)SPDHRS(ph)DT(ph)SSPEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GQS(0.049)QT(0.52)S(0.439)PDHRS(0.796)DT(0.583)S(0.498)S(0.115)PEVR 80.171 0.0015826 1154700000 324370 464200 538040 322770 641540 456610 515090 553000 392250 432560 TRUE FALSE FALSE 396524.9874 518484.152 737083.3857 340402.1078 577666.025 480517.3935 405036.8136 417375.8829 470970.9771 324730.7527 1.221088499 1.596658609 2.269829327 1.048259535 1.778907665 1.479740953 1.247300449 1.285298296 1.450343009 1 18.30888449 -7.64772983 0.426001523 1.009049417 1.633569246 0.212162345 0.318264613 1.620484031 0.820780139 0.395471933 0.257934807 2.25E-08 7.64772983 0.624519829 GQSQT(ph)SPDHRS(ph)DTS(ph)SPEVR ddPTM_HeLa_A486_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GQS(0.111)QT(0.465)S(0.425)PDHRS(0.977)DT(0.06)S(0.53)S(0.432)PEVR 92.641 0.00042949 549580000 255070 291750 285290 82190 348640 249540 296930 274050 235440 283530 TRUE FALSE FALSE 237190.9102 268630.6675 395761.9283 191342.4737 304910.3203 218754.2919 222634.9734 211654.7975 255848.1288 212532.2425 1.116023185 1.263952539 1.862126535 0.900298568 1.434654416 1.029275791 1.04753505 0.995871473 1.203808541 1 17.6973222 -6.090261996 1.352151087 1.05115681 1.349085239 0.200617169 0.240965933 0.678575507 2.539421666 0.104874465 0.109349121 8.12E-07 6.090261996 0.297928429 GQSQT(ph)SPDHRSDTSSPEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GQS(0.014)QT(0.492)S(0.492)PDHRS(0.002)DTSSPEVR 155.87 7.42E-09 137510000 19107 57620 49034 6966.8 56226 48201 47233 75596 34579 14080 TRUE FALSE FALSE 23357.28623 64358.15777 67173.71707 7347.378643 50627.94202 50724.72983 37141.28369 57055.96247 41518.68812 10570.11512 2.209747572 6.088690333 6.355060119 0.695108668 4.78972475 4.798881491 3.513801246 5.397856296 3.927931497 1 13.36770347 GQSQT(ph)SPDHRSDTSSPEVR ddPTM_HeLa_A486_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GQS(0.002)QT(0.499)S(0.499)PDHRS(0.001)DTSSPEVR 153.59 1.16E-08 1037900000 462400 376820 521100 8655.5 625090 184700 317720 314620 290440 127350 TRUE FALSE FALSE 429988.1478 346959.4108 722883.8755 20150.44142 546685.3835 161913.5919 238223.0955 242987.8941 315615.5731 95460.73109 4.504345849 3.634577348 7.572578455 0.211086184 5.7268091 1.696127717 2.495508811 2.545422514 3.30623461 1 16.54261976 -5.262933603 24.99986598 2.60030986 5.076908121 0.367955218 1.673641927 154.5844835 2586368.639 0.441736606 0.697049531 5.46E-06 5.262933603 2.476598261 GQSQTS(ph)PDHRS(ph)DT(ph)SS(ph)PEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 GQS(0.003)QT(0.219)S(0.777)PDHRS(0.992)DT(0.82)S(0.216)S(0.973)PEVR 104.5 3.60E-05 5875000000 954090 1516100 1533500 1006400 1647400 1320000 1548200 1803400 1399800 1419900 TRUE FALSE FALSE 1166324.029 1693394.707 2100805.464 1061377.084 1483379.072 1389113.159 1217414.422 1361113.322 1680727.02 1065945.061 1.094168988 1.588632255 1.970838405 0.995714622 1.39160931 1.303175191 1.142098656 1.276907574 1.57674826 1 20.02370165 -5.281394771 24.99955392 1.257189672 1.554955238 0.233699117 0.256294469 1199.51179 1502712.051 0.071932304 0.106848619 5.23E-06 5.281394771 0.297765566 GQSQTS(ph)PDHRS(ph)DT(ph)SSPEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GQS(0.078)QT(0.431)S(0.491)PDHRS(0.936)DT(0.808)S(0.205)S(0.051)PEVR 80.132 0.0020876 1219000000 208960 322520 335160 202220 376710 288820 313800 354560 276800 245920 TRUE FALSE FALSE 255442.4311 360235.9084 459149.6312 213266.7666 339203.4297 303942.1686 246754.0665 267603.6041 332351.221 184616.6698 1.38363687 1.951264254 2.487043189 1.155186944 1.83733912 1.646341952 1.336575222 1.449509431 1.800223248 1 17.4941733 -11.10686239 0.140013409 6.08E-08 2.016091224 0.255458358 0.356322662 69.19549918 1.343582442 25.38326813 2.721023292 7.82E-12 11.10686239 2.016091163 GQSQTS(ph)PDHRS(ph)DTS(ph)S(ph)PEVR ddPTM_HeLa_A486_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 GQS(0.04)QT(0.186)S(0.775)PDHRS(0.981)DT(0.532)S(0.593)S(0.894)PEVR 82.904 0.00070096 2913100000 479440 570170 551330 165050 673320 483700 543300 571220 474050 529440 TRUE FALSE FALSE 445833.7318 524987.6527 764819.7411 384244.7412 588865.9271 424026.0119 407360.5936 441165.6756 515141.0357 396864.7779 1.123389519 1.322837606 1.927154496 0.968200663 1.483794884 1.068439518 1.026446831 1.111627184 1.298026593 1 18.598288 -6.272130543 23.98396192 1.103230877 1.371906904 0.223923981 0.245712224 663.5823601 1488638.207 0.085923028 0.076616653 5.34E-07 6.272130543 0.268676027 GQSQTS(ph)PDHRS(ph)DTSS(ph)PEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GQS(0.072)QT(0.416)S(0.511)PDHRS(0.992)DT(0.109)S(0.299)S(0.6)PEVR 124.62 1.12E-05 514400000 174480 304360 295970 185570 345110 262740 283320 333060 267490 243570 TRUE FALSE FALSE 213292.4741 339952.2544 405461.6193 195707.2192 310749.6366 276496.6601 222786.3675 251376.5128 321172.7894 182852.4816 1.166472952 1.859161284 2.217424756 1.070301139 1.699455397 1.512129656 1.218394006 1.374750349 1.756458467 1 17.48032068 -5.274207845 24.99344214 1.404133208 1.75883387 0.204716557 0.332325783 1236.464908 2420297.219 0.092527463 0.138230203 5.32E-06 5.274207845 0.354700662 GQSQTS(ph)PDHRSDT(ph)S(ph)S(ph)PEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 GQS(0.076)QT(0.431)S(0.492)PDHRS(0.609)DT(0.769)S(0.7)S(0.923)PEVR 81.297 0.0010046 2821700000 264370 426640 440610 297100 471100 399850 468520 517590 430660 376010 TRUE FALSE FALSE 323178.1944 476531.8367 603609.9743 313329.8207 424195.6299 420785.5277 368416.8745 390650.241 517089.5118 282277.627 1.144894825 1.68816722 2.138355706 1.110005862 1.502760366 1.490679698 1.305157899 1.383922081 1.831847311 1 18.10675526 -5.293321962 24.9997311 1.398151709 1.660242675 0.146416025 0.308699686 1321.045369 1035853.618 0.08608819 0.127699966 5.09E-06 5.293321962 0.262090966 GQSQTS(ph)PDHRSDT(ph)SSPEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GQS(0.319)QT(0.319)S(0.361)PDHRS(0.027)DT(0.762)S(0.112)S(0.099)PEVR 91.722 0.00048088 1004600000 54333 191420 168170 27106 189710 133930 139860 205850 119730 73272 TRUE FALSE FALSE 66419.1884 213804.9039 230383.0811 28586.73214 170821.8063 140942.3677 109977.7684 155364.9647 143758.7128 55006.63887 1.207475857 3.886892714 4.18827774 0.519696035 3.105476171 2.562279219 1.999354454 2.824476607 2.613479313 1 15.74731813 -10.90983641 2.250628524 0.008175338 2.582608211 0.161418531 1.053535518 7644241.025 3668190.081 40045563.99 0.264484627 1.23E-11 10.90983641 2.574432873 GQSQTS(ph)PDHRSDT(ph)SSPEVR ddPTM_HeLa_A486_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GQS(0.323)QT(0.323)S(0.353)PDHRS(0.023)DT(0.355)S(0.325)S(0.298)PEVR 53.089 0.029903 562570000 226370 208980 267400 18165 360260 139260 167960 191090 178090 82301 TRUE FALSE FALSE 210502.632 192419.6637 370944.4412 42289.03801 315072.8315 122079.5171 125934.6315 147582.9785 193526.9846 61692.29391 3.412138188 3.119022677 6.012816475 0.685483313 5.107166739 1.978845482 2.041334882 2.392243328 3.136971773 1 15.91280267 -7.426401462 0.151916631 3.48E-14 4.999895644 0.22151681 1.402968754 6.811907139 1.069192325 14.85240708 15.00443591 3.75E-08 7.426401462 4.999895644 GQSQTS(ph)PDHRSDTS(ph)SPEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GQS(0.318)QT(0.318)S(0.364)PDHRS(0.037)DT(0.023)S(0.502)S(0.438)PEVR 81.888 0.0021968 743740000 162510 413790 412410 52678 407870 290060 316240 419220 253260 160370 TRUE FALSE FALSE 198659.7888 462179.141 564977.6208 55555.66575 367261.0307 305247.0931 248672.7406 316405.6377 304086.959 120392.7104 1.650098151 3.838929612 4.692789281 0.461453734 3.05052548 2.535428367 2.065513267 2.62811292 2.525792118 1 16.87738852 -9.803750192 0.200935903 1.21E-09 3.13434957 0.167843641 1.087381569 31.40421938 1.542085022 23.56925547 3.419214254 1.57E-10 9.803750192 3.134349569 GQSQTS(ph)PDHRSDTSSPEVR ddPTM_HeLa_A485_30min_R1 2 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GQS(0.001)QT(0.141)S(0.768)PDHRS(0.088)DT(0.001)SSPEVR;GQS(0.005)QT(0.273)S(0.718)PDHRS(0.003)DTSSPEVR ; 181.11 2.31E-18 2359280000 278021.7 1093095 998144 80918.8 944257 725040 706477 1145200 588778 211481 TRUE FALSE FALSE 339866.668 1220922.952 1367399.002 85339.18915 850243.4576 763001.9733 555532.4176 864337.9044 706940.344 158762.6787 2.140721426 7.69023905 8.612849146 0.537526765 5.355436583 4.805927813 3.499137342 5.444213409 4.452811893 1 17.27651228 -5.245347597 24.99792311 3.891244621 6.302166361 0.207013063 2.237223169 1367.964874 2125074.263 0.594481613 1.025571173 5.68E-06 5.245347597 2.410921739 GQSQTS(ph)PDHRSDTSSPEVR ddPTM_HeLa_A486_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GQS(0.001)QT(0.34)S(0.474)PDHRS(0.184)DT(0.002)SSPEVR 175.83 1.93E-13 977460000 322380 273910 294790 19178 452670 148930 221260 220160 221680 90081 TRUE FALSE FALSE 299782.8268 252204.374 408940.5828 44647.3532 395891.9076 130556.5308 165898.4078 170034.3741 240895.4009 67524.13127 4.439639891 3.735025824 6.056213905 0.661205888 5.862969285 1.933479607 2.456875855 2.518127532 3.567545355 1 16.04311555 -3.923723951 0.108708792 2.55E-13 9.122859987 0.267690144 1.509347043 73.50729179 1.170111995 19.73151628 104.127213 0.0001192 3.923723951 9.122859987 GQSQTSPDHRS(ph)DTSSPEVR ddPTM_HeLa_A485_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GQS(0.007)QT(0.212)S(0.212)PDHRS(0.56)DT(0.006)S(0.002)SPEVR 166.91 8.57E-13 2743500000 172420 567890 567450 57631 552380 371540 407000 639750 322300 121700 TRUE FALSE FALSE 210774.2342 634299.7955 777373.3686 60779.2356 497383.1077 390993.2599 320041.1251 482850.3094 386982.6537 91362.42972 2.307012136 6.942676519 8.508676607 0.665254151 5.444066113 4.279584738 3.502983952 5.284998559 4.235686976 1 16.4793134 -5.251413442 24.99470915 3.781223139 6.021776843 0.211880723 2.093690102 1163.745538 2901217.414 0.557494138 0.951227307 5.61E-06 5.251413442 2.240553704 GQSS(ph)PPPAPPICLR ddPTM_HeLa_A485_30min_R1 3 GQSSPPPAPPICLR 14 0 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 0 GQS(0.016)S(0.984)PPPAPPICLR;GQS(0.097)S(0.903)PPPAPPICLR;GQS(0.176)S(0.824)PPPAPPICLR ;; 203.27 6.90E-22 1308070000 1169330 1400910 1570610 1262620 1604140 1342870 1549170 1579990 1351060 1652490 TRUE FALSE FALSE 1429443.424 1564734.238 2151643.998 1331593.733 1444426.189 1413180.597 1218177.174 1192494.975 1622205.349 1240554.655 1.152261546 1.26131826 1.734420962 1.073385786 1.164339018 1.139152226 0.981961713 0.961259523 1.307645208 1 20.24255387 GQSS(ph)PPPAPPICLR ddPTM_HeLa_A486_30min_R1 3 GQSSPPPAPPICLR 14 0 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 0 GQS(0.028)S(0.972)PPPAPPICLR;GQS(0.126)S(0.874)PPPAPPICLR;GQS(0.167)S(0.833)PPPAPPICLR ;; 162.41 7.55E-12 1182950000 903090 1064110 935260 267557 1089240 921400 942590 989790 818420 923410 TRUE FALSE FALSE 839788.0546 979786.0482 1297417.719 622886.2176 952617.3624 807727.0361 706744.0123 764436.424 889361.3046 692182.1256 1.213247242 1.41550325 1.874387782 0.899887753 1.376252473 1.166928481 1.021037652 1.104386253 1.284866037 1 19.40079216 -5.276632923 24.99705546 1.134528378 1.492491854 0.429756565 0.199693256 772.8706844 1271557.597 0.055941832 0.083322971 5.29E-06 5.276632923 0.357963476 GQSTGKGPPQS(ph)PVFEGVYNNSR ddPTM_HeLa_A485_30min_R1 3 GQSTGKGPPQSPVFEGVYNNSR 22 1 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GQSTGKGPPQS(1)PVFEGVYNNSR;GQSTGKGPPQS(1)PVFEGVYNNSR;GQSTGKGPPQS(1)PVFEGVYNNSR ;; 257.04 1.80E-59 1597240000 561297 1721600 919480 282238 1127250 1742610 1796350 3345210 745690 493465 TRUE FALSE FALSE 686155.5812 1922926.144 1259633.915 297655.9473 1015017.032 1833850.365 1412545.148 2524792.002 895343.1431 370453.2571 1.852205557 5.190738933 3.400250614 0.803491241 2.739932806 4.950288141 3.813018568 6.815413158 2.416885602 1 18.49893199 -6.240627437 23.71105085 4.163453018 2.853018585 0.054390342 1.783595159 977.4289469 1113584.186 0.58021125 0.579467863 5.75E-07 6.240627437 -1.310434433 GQSTGKGPPQS(ph)PVFEGVYNNSR ddPTM_HeLa_A486_30min_R1 2 GQSTGKGPPQSPVFEGVYNNSR 22 1 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 GQSTGKGPPQS(1)PVFEGVYNNSR;GQSTGKGPPQS(1)PVFEGVYNNSR ; 195.86 6.54E-21 475750000 512900 260090 231883 120407 454420 197897 353080 365450 171831 442280 TRUE FALSE FALSE 476948.3586 239479.5212 321674.3076 280313.581 397422.4063 173482.4802 264735.6495 282245.0127 186725.4494 331530.2092 1.438627146 0.722346002 0.970271483 0.845514446 1.198751713 0.523278046 0.798526475 0.851340255 0.563223031 1 18.33878081 -6.258419826 24.99976504 0.741185638 1.003592455 0.290150128 0.222284094 380.0476865 3146531.387 0.071606274 0.068732099 5.52E-07 6.258419826 0.262406817 GQTGNS(ph)SRGPGDGGNR ddPTM_HeLa_A485_30min_R1 2 GQTGNSSRGPGDGGNR 16 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 GQT(0.18)GNS(0.705)S(0.115)RGPGDGGNR;GQT(0.019)GNS(0.795)S(0.186)RGPGDGGNR ; 140.63 5.92E-07 425610000 179665 286270 323530 194703 323330 251160 271240 281120 300700 270180 TRUE FALSE FALSE 219630.8594 319746.7863 443217.2102 205339.1319 291138.1299 264310.3492 213287.3582 212174.8792 361047.7318 202829.0983 1.082837035 1.576434491 2.185175667 1.012375116 1.435386403 1.303118495 1.051561931 1.046077121 1.780058852 1 17.62990511 GQTGNS(ph)SRGPGDGGNR ddPTM_HeLa_A486_30min_R1 2 GQTGNSSRGPGDGGNR 16 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 GQT(0.252)GNS(0.662)S(0.086)RGPGDGGNR;GQT(0.245)GNS(0.64)S(0.115)RGPGDGGNR ; 106.49 0.00011963 344914000 251270 218570 296740 93621 311460 243980 271930 287370 209890 271200 TRUE FALSE FALSE 233657.2706 201249.7172 411645.675 217954.4193 272393.7826 213880.2282 203890.2378 221942.1242 228083.4342 203289.7548 1.149380454 0.989964877 2.024920909 1.072136762 1.339928728 1.052095461 1.002953828 1.091752629 1.121962267 1 17.63317798 -6.263139514 24.06338295 1.05631243 1.323112097 0.194074753 0.266191417 160.7327846 2274963.242 0.092038014 0.08542086 5.46E-07 6.263139514 0.266799667 GQTLVVQFTVK ddPTM_HeLa_A485_30min_R1 2 GQTLVVQFTVK 11 0 P27797 P27797 CALR Calreticulin 0 0 ; ; 188.06 3.78E-09 158800000 230043 214440 216966 299090 321430 218230 296850 266050 199131 388510 FALSE FALSE TRUE 281215.2717 239516.8926 297230.7521 315428.5294 289427.3006 229656.1854 233425.5725 200800.8203 239094.7652 291661.607 0.964183372 0.821215021 1.019094543 1.081488005 0.992339388 0.787406295 0.800330132 0.688471899 0.819767701 1 18.15393596 -6.262592357 24.81560365 0.798545626 0.975375479 0.394611334 0.09519845 91.59130081 1971304.326 0.033279699 0.031006727 5.46E-07 6.262592357 0.176829853 GQTLVVQFTVK ddPTM_HeLa_A486_30min_R1 2 GQTLVVQFTVK 11 0 P27797 P27797 CALR Calreticulin 0 0 ; ; 166.65 1.17E-05 153326000 267910 340220 256770 173226 377590 355210 416020 351900 282870 357530 FALSE FALSE TRUE 249130.8925 313259.7281 356198.2205 403278.8824 330229.1413 311387.8017 311927.3958 271780.0519 307389.3994 268002.1609 0.929585387 1.168870158 1.329087121 1.504759816 1.232188353 1.161885414 1.163898809 1.014096495 1.146966123 1 18.03188511 -6.828600386 1.714357748 1.060890859 1.245206507 0.216404105 0.140701939 0.608359574 3.62897469 0.086993921 0.050487532 1.48E-07 6.828600386 0.184315648 GQTPEAGADKRS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GQTPEAGADKRSPR 14 2 Q07617 Q07617 SPAG1 Sperm-associated antigen 1 1 0 GQTPEAGADKRS(1)PR;GQTPEAGADKRS(1)PR ; 58.246 0.021689 121327000 86957 93724 84656 69360 147115 114142 163925 159933 77400 128767 TRUE FALSE FALSE 80861.76335 86296.9689 117437.0704 161473.5853 128662.4649 100060.3206 122909.2312 123519.7472 84109.09432 96522.90507 0.837746888 0.894056896 1.216675672 1.672904324 1.3329734 1.036648456 1.273368545 1.279693635 0.871390001 1 16.55858372 -4.751116021 5.262048936 1.238583734 0.857135487 0.299125071 0.208231484 0.193911746 15.60556087 0.056204213 0.141465939 1.77E-05 4.751116021 -0.381448247 GQTPLTEGS(ph)EDLDGHS(ph)DPEESFAR ddPTM_HeLa_A485_30min_R1 1 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 0 GQT(0.064)PLT(0.42)EGS(0.516)EDLDGHS(0.998)DPEES(0.002)FAR 92.91 0.0021734 587040000 263890 239630 212660 376310 250180 231570 319230 307230 213430 563800 TRUE FALSE FALSE 322591.4201 267652.644 291331.7835 396866.8624 225271.2008 243694.6471 251023.9026 231881.3608 256263.4433 423255.036 0.762167943 0.632367299 0.688312622 0.937654201 0.532235134 0.575763137 0.593079541 0.547852574 0.605458699 1 18.69116771 -10.21627424 4.447343322 1.000096227 0.650939352 0.450912713 0.114936579 26470378.42 60806837.08 18412.49635 0.029388869 6.08E-11 10.21627424 -0.349156875 GQTPLTEGSEDLDGHS(ph)DPEESFAR ddPTM_HeLa_A485_30min_R1 2 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 GQTPLTEGSEDLDGHS(1)DPEESFAR;GQTPLTEGSEDLDGHS(1)DPEESFAR ; 260.37 1.71E-61 1633870000 381500 570350 517800 340230 494760 428450 513560 580050 429130 588250 TRUE FALSE FALSE 466363.3588 637047.4711 709355.7675 358815.9034 445499.9572 450882.9795 403833.7106 437791.828 515252.4548 441610.1009 1.056052291 1.442556386 1.606294254 0.812517428 1.00880835 1.020997886 0.914457594 0.991353746 1.166758762 1 18.75241365 -5.266512953 24.99722352 0.98667912 1.375726519 0.569484846 0.151546401 293.0518631 1443852.049 0.042589089 0.065407743 5.41E-06 5.266512953 0.389047399 GQTPLTEGSEDLDGHS(ph)DPEESFAR ddPTM_HeLa_A486_30min_R1 1 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 GQTPLTEGSEDLDGHS(1)DPEESFAR 340.56 2.72E-123 543860000 223660 241550 241500 64945 346560 202670 204190 222440 227170 177230 TRUE FALSE FALSE 207982.589 222408.6983 335015.2676 151195.2421 303091.2133 177666.636 153099.5023 171795.2678 246861.2785 132850.4544 1.565539161 1.674128246 2.521747246 1.138085999 2.281446568 1.337343081 1.152419862 1.293147762 1.858189192 1 17.01944364 -6.355666315 15.34447233 1.335387682 1.826478193 0.277619424 0.409468982 3.045632139 492.164438 0.138707779 0.122324219 4.41E-07 6.355666315 0.491090511 GQVCVMIHSGSR ddPTM_HeLa_A485_30min_R1 2 GQVCVMIHSGSR 12 0 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 0 ; ; 94.122 0.0046984 42181000 21360 30370 36467 19591.7 36284 31262 30962 37537 26496 30411 FALSE FALSE TRUE 26111.45831 33921.50732 49957.66082 20661.94496 32671.43756 32898.82998 24346.71576 28330.99189 31813.50416 22830.09737 1.143729608 1.485824031 2.18823687 0.905030961 1.431068691 1.441028895 1.066430658 1.240949236 1.39348964 1 14.47864939 -5.294254988 24.99996995 1.233894711 1.593920353 0.271857615 0.294240359 904.897543 689377.5678 0.08303216 0.12316596 5.08E-06 5.294254988 0.360025642 GQVIIIS(ph)DS(ph)DDDDDER ddPTM_HeLa_A485_30min_R1 2 GQVIIISDSDDDDDER 16 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 2 0 GQVIIIS(1)DS(1)DDDDDER;GQVIIIS(1)DS(1)DDDDDER ; 239.87 3.98E-41 392940000 367640 547940 519010 379350 493020 378130 407130 433590 451470 533260 TRUE FALSE FALSE 449420.2497 612016.8166 711013.3968 400072.9299 443933.1977 397928.3021 320143.3496 327251.3727 542075.8879 400328.0959 1.122629798 1.528788069 1.776076683 0.999362608 1.108923411 0.994005432 0.799702426 0.81745792 1.35407905 1 18.61082335 -5.287445056 23.87530441 0.997528308 1.481127129 0.513907073 0.207100648 320.6695738 294399.6954 0.059326133 0.088036322 5.16E-06 5.287445056 0.483598822 GQVIIIS(ph)DS(ph)DDDDDER ddPTM_HeLa_A486_30min_R1 2 GQVIIISDSDDDDDER 16 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 2 0 GQVIIIS(1)DS(1)DDDDDER;GQVIIIS(1)DS(1)DDDDDER ; 245.82 2.09E-41 362360000 545840 570590 513970 182220 541750 477310 489670 493380 486340 524120 TRUE FALSE FALSE 507579.4347 525374.3703 712992.9486 424217.3689 473798.6634 418424.3451 367149.3868 381048.1444 528496.3428 392876.9406 1.291955272 1.33724919 1.814799687 1.079771616 1.205972187 1.06502648 0.934514981 0.969891854 1.345195628 1 18.58371797 -5.313274076 24.48261643 1.082354922 1.466926205 0.526902345 0.171583004 208.9714263 98701.07548 0.048711426 0.072250804 4.86E-06 5.313274076 0.384571283 GQVSESEDS(ph)ITK ddPTM_HeLa_A485_30min_R1 1 GQVSESEDSITK 12 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVSES(0.01)EDS(0.99)IT(0.001)K 181.26 7.82E-13 464200000 289270 255910 228710 410670 308250 248400 371400 349120 257230 638400 TRUE FALSE FALSE 353617.1135 285836.4484 313319.3464 433103.8622 277559.5477 261405.8399 292047.3559 263497.7726 308853.7015 479258.6289 0.737841934 0.596413776 0.653758383 0.903695492 0.579143558 0.545437941 0.609373183 0.549802876 0.644440565 1 18.87044488 -10.84302699 6.612611787 1.032613696 0.644039657 0.522581954 0.101291162 0.044803711 0.001063569 0.090224566 0.024986811 1.44E-11 10.84302699 -0.388574039 GQVSESEDS(ph)ITK ddPTM_HeLa_A486_30min_R1 1 GQVSESEDSITK 12 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVSESEDS(1)ITK 219.61 6.00E-23 404480000 253320 291880 186190 117330 249120 300490 370780 345520 235820 357650 TRUE FALSE FALSE 235563.5761 268750.3658 258287.7543 273150.1695 217873.0466 263418.599 278006.9223 266852.6386 256261.0675 268092.1121 0.878666568 1.002455327 0.963429145 1.018866864 0.81267981 0.98256751 1.036982849 0.995376688 0.955869479 1 18.03236925 -6.506012175 24.98102295 0.998543877 0.940414593 0.204040973 0.058286606 1280.508149 1896562.218 0.02095764 0.018035293 3.12E-07 6.506012175 -0.058129284 GQVSESEDS(ph)ITKQIESLETEMEFR ddPTM_HeLa_A485_30min_R1 2 GQVSESEDSITKQIESLETEMEFR 24 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVSES(0.001)EDS(0.788)IT(0.211)KQIESLETEMEFR;GQVS(0.04)ES(0.04)EDS(0.752)IT(0.156)KQIES(0.009)LET(0.003)EMEFR ; 119.75 3.56E-05 65457000 13012.3 18163.4 13566.7 15108.5 28766 29655 41443 55881 14818.4 28305 TRUE FALSE FALSE 15906.84124 20287.45163 18585.58689 15933.8391 25901.95604 31207.68994 32588.36449 42176.09713 17792.31696 21249.08441 0.748589489 0.954744743 0.874653539 0.749860031 1.218968099 1.468660453 1.533636173 1.984843032 0.837321581 1 14.37511306 -5.938263435 3.62616593 1.432314964 0.844868112 0.406264378 0.298850703 0.209395742 5.61279035 0.094657109 0.10673152 1.15E-06 5.938263435 -0.587446852 GQVSESEDS(ph)ITKQIESLETEMEFR ddPTM_HeLa_A486_30min_R1 1 GQVSESEDSITKQIESLETEMEFR 24 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVSESEDS(0.995)IT(0.005)KQIESLETEMEFR 218.69 2.68E-38 20570000 8850.2 7282.5 5906.8 6009.1 12514 7771 16225 14169 4860.9 11545 TRUE FALSE FALSE 8229.846682 6705.408178 8194.07115 13989.48848 10944.37743 6812.29303 12165.33339 10943.02801 5282.246726 8654.056855 0.950981351 0.774828302 0.94684739 1.616523755 1.264652823 0.78717914 1.405737632 1.264496893 0.610378094 1 13.07916088 -5.016191113 24.69639229 1.158936255 0.862387973 0.140804503 0.277940984 1031.639063 1573571.295 0.075384592 0.13554206 9.63E-06 5.016191113 -0.296548281 GQWRPLS(ph)VEDIGAYSYPVSAAGR ddPTM_HeLa_A485_30min_R1 2 GQWRPLSVEDIGAYSYPVSAAGR 23 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 GQWRPLS(1)VEDIGAYSYPVSAAGR;GQWRPLS(1)VEDIGAYSYPVSAAGR ; 219.67 2.72E-38 187168000 78777 113488 111885 83591 115464 118218 126273 125850 115025 118432 TRUE FALSE FALSE 96300.67187 126759.4344 153275.9174 88157.36467 103967.9987 124407.7117 99293.74199 94985.09017 138109.4624 88909.08198 1.0831365 1.425719753 1.723962435 0.991545101 1.169374336 1.399268881 1.116800891 1.068339567 1.553378568 1 16.44004318 -5.280606362 24.89445567 1.193746091 1.41241767 0.181846841 0.218609821 1324.527873 1720319.722 0.061254669 0.091024613 5.24E-06 5.280606362 0.218671578 GQWRPLS(ph)VEDIGAYSYPVSAAGR ddPTM_HeLa_A486_30min_R1 3 GQWRPLSVEDIGAYSYPVSAAGR 23 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 GQWRPLS(1)VEDIGAYSYPVSAAGR;GQWRPLS(1)VEDIGAYSYPVSAAGR;GQWRPLS(1)VEDIGAYSYPVSAAGR ;; 132.69 9.80E-07 253442000 86709 91565 90290 213949.2 123892 94314 97276 106773 81208 162904 TRUE FALSE FALSE 80631.14687 84309.05593 125252.7061 498084.55 108352.3101 82678.49759 72936.51592 82463.11874 88247.17483 122111.7781 0.660306058 0.690425258 1.025721745 4.078923081 0.887320714 0.67707226 0.597293046 0.675308476 0.722675373 1 16.89784283 -5.974759663 24.99953327 0.714111526 1.628031861 0.17577285 0.910141435 417.3142669 413330.9286 0.300617023 0.340881431 1.06E-06 5.974759663 0.913920335 GRAEGEWEDQEALDYFS(ph)DK ddPTM_HeLa_A485_30min_R1 3 GRAEGEWEDQEALDYFSDK 19 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDYFS(1)DK;GRAEGEWEDQEALDYFS(1)DK;GRAEGEWEDQEALDY(0.021)FS(0.979)DK ;; 143.37 1.24E-08 264516000 220756 252174 150338.5 274262 184512 215095 303104 265692 164928 323008 TRUE FALSE FALSE 269862.4106 281663.5557 205954.9673 289244.2386 166141.3374 226357.0416 238343.3543 200530.6204 198027.5368 242488.0501 1.112889524 1.161556438 0.849340688 1.192818526 0.68515268 0.933477099 0.982907628 0.826971145 0.816648642 1 17.88755413 -4.838280301 0.870431333 0.884824521 1.186793582 0.281295025 0.133214967 1.38854811 1.433219136 0.050514388 0.342151475 1.45E-05 4.838280301 0.301969062 GRAEGEWEDQEALDYFS(ph)DK ddPTM_HeLa_A486_30min_R1 4 GRAEGEWEDQEALDYFSDK 19 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDYFS(1)DK;GRAEGEWEDQEALDYFS(1)DK;GRAEGEWEDQEALDYFS(1)DK;GRAEGEWEDQEALDYFS(1)DK ;;; 183.24 2.00E-18 337905000 636620 574280 257576 278316 374852 546668 625900 526171 389956 974730 TRUE FALSE FALSE 591996.2255 528771.9613 357316.3253 647933.7133 327834.5668 479225.6603 469293.1999 406373.3495 423757.7001 730651.2636 0.810230893 0.72369951 0.489038127 0.886789287 0.448688154 0.655888362 0.642294379 0.55617963 0.579972582 1 19.47882345 -12.1667174 10.00630072 0.854162237 0.660580709 0 0.168770232 0 0 0 0.035860634 6.81E-13 12.1667174 -0.193581528 GRAEGEWEDQEALDYFS(ph)DKESGK ddPTM_HeLa_A485_30min_R1 18 GRAEGEWEDQEALDYFSDKESGK 23 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDY(0.009)FS(0.991)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(0.999)DKES(0.001)GK;GRAEGEWEDQEALDY(0.002)FS(0.965)DKES(0.034)GK;GRAEGEWEDQEALDY(0.002)FS(0.995)DKES(0.003)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(0.998)DKES(0.002)GK;GRAEGEWEDQEALDYFS(0.999)DKES(0.001)GK;GRAEGEWEDQEALDYFS(0.995)DKES(0.005)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(0.998)DKES(0.002)GK;GRAEGEWEDQEALDY(0.001)FS(0.979)DKES(0.019)GK;GRAEGEWEDQEALDYFS(0.958)DKES(0.042)GK ;;;;;;;;;;;;;;;;; 261.75 1.31E-61 23424088200 6076532.8 4735039.8 3453390.8 11618385 7608289.9 6778726.8 12230387 11223829 5217187.4 16396860 TRUE FALSE FALSE 7428236.558 5288761.515 4730943.765 12253067.95 6850781.843 7133650.453 9617264.904 8471167.339 6264229.056 12309424.56 0.603459286 0.429651401 0.384335087 0.99542167 0.556547693 0.579527533 0.78129281 0.688185487 0.508896986 1 23.55325999 -14 0.139381908 2.236221103 0.486518773 0.319656079 0.168100317 176.0949541 1.504678672 61.27636594 1.077836631 1.00E-14 14 -1.74970233 GRAEGEWEDQEALDYFS(ph)DKESGK ddPTM_HeLa_A486_30min_R1 17 GRAEGEWEDQEALDYFSDKESGK 23 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDY(0.002)FS(0.996)DKES(0.002)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(0.946)DKES(0.054)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDY(0.373)FS(0.624)DKES(0.003)GK;GRAEGEWEDQEALDYFS(0.998)DKES(0.002)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDY(0.036)FS(0.889)DKES(0.075)GK;GRAEGEWEDQEALDYFS(1)DKESGK;GRAEGEWEDQEALDYFS(1)DKESGK ;;;;;;;;;;;;;;;; 261.28 2.17E-61 17796541300 8552704 7517283 3171714.9 7273125.6 7613952 10611319 15617680 14133712 5676278 17284098.1 TRUE FALSE FALSE 7953203.616 6921586.118 4399887.851 16932203.96 6658939.143 9302202.35 11709971.28 10915774.31 6168302.347 12956047.44 0.613860335 0.534235935 0.339601092 1.306895799 0.513963782 0.717981498 0.903822816 0.842523491 0.476094455 1 23.62712232 GRAPS(ph)RDEGSLLLGSR ddPTM_HeLa_A485_30min_R1 2 GRAPSRDEGSLLLGSR 16 2 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 GRAPS(0.999)RDEGS(0.001)LLLGSR;GRAPS(0.982)RDEGS(0.018)LLLGSR ; 96.379 0.0006686 245790000 167973 250960 253920 160175 251710 204883 242770 249800 153497 162716 TRUE FALSE FALSE 205338.0144 280307.5889 347855.5745 168924.9547 226648.8686 215610.3571 190900.2063 188536.1583 184302.4399 122153.8958 1.680978024 2.294708549 2.847683017 1.382886347 1.855437088 1.765071476 1.562784429 1.5434314 1.50877251 1 16.89834035 -6.920902696 0.323050252 0.986141248 2.320770459 0.46166393 0.355723962 1.448701291 0.43011561 0.533473376 0.692077027 1.20E-07 6.920902696 1.334629211 GRAS(ph)PGGVSTSSSDGK ddPTM_HeLa_A485_30min_R1 2 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(1)PGGVSTSSSDGK;GRAS(0.999)PGGVS(0.001)TSSSDGK ; 166.77 7.05E-11 500220000 442950 506970 480380 508600 564310 498440 593330 623970 536580 658590 TRUE FALSE FALSE 541482.6993 566255.7314 658092.5523 536383.5302 508125.315 524537.5477 466560.1984 470940.3792 644266.6842 494415.6335 1.095197366 1.145303047 1.331051261 1.084883838 1.027729062 1.060924275 0.943659882 0.952519191 1.303087202 1 18.91536484 -5.50616795 23.47587179 1.042430657 1.189657791 0.254088259 0.109097347 437.3798173 614444.8946 0.030978967 0.044573915 3.12E-06 5.50616795 0.147227134 GRAS(ph)PGGVSTSSSDGK ddPTM_HeLa_A486_30min_R1 1 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(0.791)PGGVS(0.035)T(0.054)S(0.054)S(0.054)S(0.012)DGK 90.348 0.013954 115560000 95903 89633 60084 37440 81320 108420 120310 96684 78113 134110 TRUE FALSE FALSE 89180.69494 82530.15464 83350.13391 87162.21211 71120.08732 95044.24273 90207.16549 74671.1638 84883.89773 100527.9831 0.88712309 0.82096698 0.829123706 0.867044274 0.707465575 0.945450608 0.897333884 0.742789833 0.84438079 1 16.61723762 GRAS(ph)PGGVSTSSSDGKAEK ddPTM_HeLa_A485_30min_R1 3 GRASPGGVSTSSSDGKAEK 19 2 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(1)PGGVSTSSSDGKAEK;GRAS(1)PGGVSTSSSDGKAEK;GRAS(0.489)PGGVS(0.406)T(0.089)S(0.014)S(0.002)SDGKAEK ;; 168.57 6.76E-13 944279000 397145 535866 382573 533506 894934 833266 1262150 1849940 560908 787431 TRUE FALSE FALSE 485488.5351 598530.8673 524102.6729 562650.0819 805831.2287 876894.5193 992481.3417 1396239.314 673477.0906 591138.9433 0.821276522 1.012504546 0.886598115 0.951806827 1.363184134 1.483398327 1.678930737 2.361947779 1.1392873 1 19.17313774 -5.963896998 1.791387411 1.640561635 0.905298883 0.395744346 0.34934291 0.313369883 2.04465029 0.127950693 0.144899624 1.09E-06 5.963896998 -0.735262752 GRAS(ph)PGGVSTSSSDGKAEK ddPTM_HeLa_A486_30min_R1 1 GRASPGGVSTSSSDGKAEK 19 2 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(0.985)PGGVS(0.007)T(0.005)S(0.002)SSDGKAEK 135.68 1.42E-06 76053000 74495 58144 41366 50398 95182 72766 119290 127940 46702 107910 TRUE FALSE FALSE 69273.28519 53536.45768 57384.02302 117329.091 83243.38602 63788.87075 89442.38028 98810.85491 50750.16696 80888.63362 0.856403206 0.661853901 0.709420106 1.450501581 1.029111042 0.788601165 1.105747202 1.221566622 0.62740789 1 16.30364937 GRAS(ph)S(ph)HS(ph)SQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 3 0 GRAS(0.996)S(0.99)HS(0.694)S(0.31)QT(0.01)QGGGSVTK 80.293 0.0057322 217270000 198260 262370 252450 281200 311340 260840 343060 382480 287810 362460 TRUE FALSE FALSE 242362.253 293051.8892 345841.7603 296561.244 280341.8964 274497.1791 269762.4285 288676.1803 345570.8271 272105.3926 0.890692576 1.076979351 1.270984588 1.089876394 1.030269535 1.008789927 0.991389498 1.060898417 1.269988896 1 18.05380602 -10.35750457 3.918719033 0.999767976 1.076435155 0.040842435 0.11143388 0.000233346 3.83E-05 0.111456599 0.0269505 4.39E-11 10.35750457 0.076667178 GRAS(ph)S(ph)HSS(ph)QTQGGGSVTK ddPTM_HeLa_A486_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 3 0 GRAS(1)S(0.991)HS(0.02)S(0.98)QT(0.009)QGGGSVTK;GRAS(0.952)S(0.822)HS(0.233)S(0.804)QT(0.187)QGGGS(0.002)VTK ; 112.48 0.00017536 682000000 680730 753130 581970 287160 822010 767600 931720 934240 717760 905920 TRUE FALSE FALSE 633014.3423 693449.2359 807324.3697 668522.9923 718905.8409 672901.3164 698593.8013 721533.9463 779976.0147 679071.7355 0.932175953 1.021172285 1.188864633 0.984465937 1.058659643 0.99091345 1.028748164 1.062529787 1.148591487 1 19.37320446 -7.518389033 24.5145338 1.084717359 1.033941213 0.06054906 0.071214166 422.9084742 2309251.096 0.045559372 0.018125386 3.03E-08 7.518389033 -0.050776146 GRAS(ph)SHS(ph)SQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.697)S(0.325)HS(0.829)S(0.15)QT(0.001)QGGGSVTK 91.238 0.00078702 594630000 695590 699260 553050 83747 788020 667230 729190 730880 618090 548560 TRUE FALSE FALSE 646832.733 643848.0909 767205.7712 194967.2483 689179.1836 584913.9465 546738.9494 564474.579 671666.5389 411197.0055 1.573048258 1.565789834 1.865786377 0.474145594 1.676031621 1.422466455 1.329627751 1.37275946 1.633442194 1 18.64947023 -11.12800461 2.485166504 0.11613789 1.424879404 0.118547302 0.354749851 6230029.377 2679929.358 31100840.17 0.087127619 7.45E-12 11.12800461 1.308741514 GRAS(ph)SHSSQTQGGGS(ph)VTK ddPTM_HeLa_A485_30min_R1 3 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.909)S(0.091)HSSQT(0.022)QGGGS(0.951)VT(0.027)K;GRAS(0.939)S(0.058)HS(0.002)SQTQGGGS(0.984)VT(0.016)K;GRAS(0.586)S(0.303)HS(0.181)S(0.026)QT(0.014)QGGGS(0.884)VT(0.007)K ;; 146.53 4.97E-08 1685571000 735607 1360110 1271834 323757 2010980 936150 1260700 1465440 1052527 745811 TRUE FALSE FALSE 899240.2393 1519163.033 1742338.322 341443.0251 1810759.77 985165.3664 991341.146 1106038.542 1263759.515 559894.0433 1.606090027 2.71330451 3.111907231 0.609835074 3.234111511 1.759556791 1.770587056 1.975442596 2.257140489 1 19.09479431 -10.73163126 0.26774888 7.70E-15 2.270642197 0.169212419 0.736713519 46.56784097 2.124944683 32.13047457 0.984022089 1.86E-11 10.73163126 2.270642197 GRAS(ph)SHSSQTQGGGS(ph)VTK ddPTM_HeLa_A486_30min_R1 4 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.663)S(0.33)HS(0.006)SQT(0.009)QGGGS(0.968)VT(0.023)K;GRAS(0.972)S(0.028)HS(0.001)SQT(0.016)QGGGS(0.969)VT(0.014)K;GRAS(0.921)S(0.079)HSSQT(0.002)QGGGS(0.978)VT(0.02)K;GRAS(0.776)S(0.217)HS(0.006)S(0.002)QT(0.007)QGGGS(0.894)VT(0.099)K ;;; 160.22 6.63E-12 2314290000 4190340 4436650 4043430 275495 5695700 3142670 3867610 3715720 4115780 1169780 TRUE FALSE FALSE 3896618.805 4085073.696 5609154.383 641366.2827 4981292.196 2754959.328 2899893.071 2869731.67 4472539.124 876859.474 4.443834982 4.65875527 6.396868083 0.731435654 5.680832954 3.141848163 3.307135472 3.272738397 5.100633861 1 19.74198613 -9.78938761 0.270705864 6.01E-34 4.49789635 0.255611567 1.527095042 19.09018123 1.402195265 23.8882772 2.158012177 1.62E-10 9.78938761 4.49789635 GRAS(ph)SHSSQTQGGGS(ph)VTKK ddPTM_HeLa_A485_30min_R1 1 GRASSHSSQTQGGGSVTKK 19 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.708)S(0.257)HS(0.035)SQT(0.06)QGGGS(0.916)VT(0.024)KK 71.418 0.003341 125660000 31739 49312 35965 15876 84831 45442 65865 89048 37100 39508 TRUE FALSE FALSE 38799.23105 55078.60944 49269.95013 16743.26568 76384.92778 47821.27285 51792.40468 67208.83838 44545.6297 29659.38269 1.308160438 1.857038294 1.661192704 0.564518347 2.575405179 1.612348893 1.746240143 2.266022833 1.501906839 1 14.85620095 -4.24117986 22.06300013 1.68061709 1.308158675 0.029158069 0.540801974 3511.610328 3823901.43 0.130630759 4.124157701 5.74E-05 4.24117986 -0.372458414 GRAS(ph)SHSSQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.309)S(0.309)HS(0.054)S(0.309)QT(0.019)QGGGSVTK;GRAS(0.197)S(0.197)HS(0.197)S(0.197)QT(0.197)QGGGS(0.017)VTK ; 99.891 0.00020504 770822000 65783 124778 121299 47598 128797 119510 119804 191850 92182 75707 TRUE FALSE FALSE 80416.2014 139369.7017 166172.5478 50198.15822 115973.5184 125767.3588 94206.89669 144798.4867 110682.0819 56834.63818 1.41491534 2.452196515 2.923790018 0.883231772 2.040542918 2.212864598 1.657561299 2.547715466 1.947440599 1 15.79448284 -8.045723448 22.81199988 0.99999999 2.033243616 0.227845502 0.557816008 5905.686723 2946417.081 0.532017727 0.137366387 9.00E-09 8.045723448 1.033243626 GRAS(ph)SHSSQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 3 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.759)S(0.095)HS(0.127)S(0.018)QTQGGGSVTK;GRAS(0.557)S(0.123)HS(0.123)S(0.16)QT(0.036)QGGGSVTK;GRAS(0.2)S(0.2)HS(0.2)S(0.2)QT(0.2)QGGGS(0.002)VTK ;; 100.76 0.00014923 469810000 367623 371040 378706 97573 515259 280580 323017 334064 377045 288254 TRUE FALSE FALSE 341854.5261 341637.4391 525351.1053 227154.8751 450630.4116 245964.8923 242194.7301 258004.9198 409727.5642 216073.3222 1.582122784 1.581118093 2.431355708 1.051286076 2.085543958 1.138339939 1.120891407 1.194061891 1.896243183 1 17.72116143 -6.278874758 24.94338986 1.272722645 1.736557783 0.257715935 0.404054338 1182.7448 1692052.175 0.137817592 0.121819205 5.26E-07 6.278874758 0.463835138 GRASPGGVS(ph)TSSSDGK ddPTM_HeLa_A485_30min_R1 1 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(0.013)PGGVS(0.461)T(0.258)S(0.258)S(0.011)SDGK 180.76 1.66E-16 236720000 179320 189240 160280 225920 203170 188640 255130 223900 185430 274220 TRUE FALSE FALSE 219209.1154 211369.9718 219574.2418 238261.4375 182941.6814 198516.8987 200619.3913 168988.1739 222644.1001 205862.0006 1.064835252 1.026755648 1.066608899 1.157384252 0.888661729 0.964320264 0.97453338 0.820880849 1.081521113 1 17.65131803 -5.768173475 24.99999589 0.947474326 1.074294053 0.418845762 0.071092015 148.1668267 550060.4025 0.021082834 0.02443731 1.71E-06 5.768173475 0.126819727 GRASPGGVS(ph)TSSSDGK ddPTM_HeLa_A486_30min_R1 1 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(0.127)PGGVS(0.268)T(0.268)S(0.034)S(0.268)S(0.034)DGK 223.88 9.19E-33 273440000 250670 258250 158210 93482 245070 260410 299730 286250 204170 335610 TRUE FALSE FALSE 233099.3275 237785.3295 219473.149 217630.8203 214331.0354 228283.2619 224734.3838 221077.1238 221867.62 251571.0715 0.926574451 0.945201402 0.872410121 0.865086828 0.851970118 0.907430495 0.893323634 0.878785953 0.881928191 1 17.94060651 -10.174045 5.864563909 1.000001566 0.890657121 0.593857912 0.026933595 6.06E-07 8.53E-08 0.028640323 0.006946199 6.70E-11 10.174045 -0.109344445 GRASPGGVSTSS(ph)SDGK ddPTM_HeLa_A486_30min_R1 1 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(0.087)PGGVS(0.037)T(0.087)S(0.017)S(0.667)S(0.105)DGK 181.36 1.60E-16 203100000 237930 254860 145700 85179 201940 253060 279330 267640 210530 321840 TRUE FALSE FALSE 221252.3357 234663.9654 202118.942 198301.0167 176610.8022 221840.0301 209438.6795 206704.2145 228778.9099 241249.1692 0.917111286 0.972703725 0.837801608 0.821975957 0.732068022 0.919547333 0.868142594 0.856807985 0.948309628 1 17.88016445 -7.921437194 3.259590784 0.999214202 0.864197792 0.345727204 0.061472467 0.265477959 5.661249208 0.063821524 0.017068897 1.20E-08 7.921437194 -0.13501641 GRASS(ph)HS(ph)SQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.272)S(0.728)HS(0.995)S(0.005)QTQGGGSVTK;GRAS(0.03)S(0.947)HS(0.982)S(0.041)QTQGGGSVTK ; 197.38 4.67E-25 4751700000 1186710 1947030 1751070 1181130 2322300 2257700 2567400 3615800 1933310 1847660 TRUE FALSE FALSE 1450689.545 2174718.222 2398863.661 1245652.141 2091083.658 2375909.681 2018854.016 2729019.381 2321307.584 1387072.366 1.045864355 1.567847702 1.72944377 0.898044091 1.507551956 1.71289526 1.455478507 1.967467198 1.673530265 1 20.40361163 -5.992205005 24.98845048 1.61508375 1.339155478 0.109459029 0.320340921 372.6286336 1194526.707 0.097463278 0.110312322 1.02E-06 5.992205005 -0.275928272 GRASS(ph)HSS(ph)QTQGGGSVTK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.441)S(0.559)HS(0.24)S(0.759)QT(0.001)QGGGSVTK;GRAS(0.04)S(0.958)HS(0.024)S(0.977)QT(0.001)QGGGSVTK ; 156.31 1.34E-08 3156100000 736620 1338380 1036380 788190 1447990 1518730 1787440 2640400 1294670 1232400 TRUE FALSE FALSE 900478.5777 1494891.899 1419780.089 831246.8239 1303823.031 1598248.354 1405538.842 1992837.76 1554498.394 925185.3606 0.973295316 1.615775565 1.534589878 0.898465172 1.409256012 1.727489887 1.519197019 2.153987563 1.680202108 1 19.81938291 -6.135940098 4.585630107 1.680832506 1.286254735 0.187761732 0.337286415 0.348526398 11.48862098 0.111479522 0.111947063 7.31E-07 6.135940098 -0.394577771 GRASS(ph)HSS(ph)QTQGGGSVTK ddPTM_HeLa_A486_30min_R1 3 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.111)S(0.886)HS(0.264)S(0.727)QT(0.012)QGGGSVTK;GRAS(0.16)S(0.832)HS(0.245)S(0.763)QTQGGGSVTK;GRAS(0.134)S(0.861)HS(0.296)S(0.708)QT(0.001)QGGGSVTK ;; 164.48 5.08E-12 2089010000 2349050 2258010 1871740 484540 2858160 2304850 2615420 2734320 2188720 2278720 TRUE FALSE FALSE 2184393.726 2079077.064 2596527.855 1128033.607 2499662.922 2020501.041 1961014.253 2111775.026 2378440.012 1708113.68 1.278833927 1.217177222 1.520114197 0.660397268 1.463405481 1.182884409 1.148058397 1.236319954 1.392436604 1 20.70397256 GRASS(ph)HSSQT(ph)QGGGSVTK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.328)S(0.653)HS(0.154)S(0.236)QT(0.369)QGGGS(0.155)VT(0.105)K;GRAS(0.368)S(0.466)HS(0.218)S(0.21)QT(0.694)QGGGS(0.045)VTK ; 122.59 1.44E-05 763699000 407770 663530 668750 220752 1039010 487740 702810 762100 566190 453950 TRUE FALSE FALSE 498477.0297 741124.0616 916148.454 232811.1228 935562.5162 513277.3122 552648.9021 575193.7801 679819.1396 340788.6193 1.462716187 2.174732428 2.688318805 0.683154042 2.745286853 1.506145696 1.621676519 1.68783154 1.994841086 1 18.37851763 -11.17660388 0.269152663 5.38E-11 1.942029062 0.156712708 0.578894144 66.07414825 2.470807228 41.74482341 0.738854433 6.66E-12 11.17660388 1.942029062 GRASS(ph)HSSQT(ph)QGGGSVTK ddPTM_HeLa_A486_30min_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.324)S(0.432)HS(0.16)S(0.17)QT(0.726)QGGGS(0.187)VT(0.001)K 52.79 0.033273 27111000 32772 35962 25107 21555 38710 47383 59213 55669 29082 70478 TRUE FALSE FALSE 30474.85203 33112.24015 34829.10279 50181.12933 33854.63084 41537.36722 44397.28111 42994.38395 31602.85118 52829.85007 0.576849111 0.62677142 0.659269386 0.949863179 0.640823905 0.786248062 0.840382493 0.813827484 0.59820066 1 15.68906569 -13.99999755 0.037143717 2.179516018 2.08E-10 0.367402773 0.1136995 1134.898512 3.149405589 159.8405011 52.23776474 1.00E-14 13.99999755 -2.179516018 GRASS(ph)HSSQTQGGGS(ph)VTK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.39)S(0.483)HS(0.125)S(0.003)QTQGGGS(1)VTK;GRAS(0.397)S(0.572)HS(0.06)S(0.025)QT(0.007)QGGGS(0.918)VT(0.021)K ; 167.72 9.26E-12 459997000 248548 434232 392682 114056 643700 313899 387694 418308 330206 247766 TRUE FALSE FALSE 303836.6451 485011.6551 537951.4127 120286.5905 579610.9678 330334.2663 304860.0097 315717.3071 396475.3154 186002.496 1.63350843 2.607554552 2.892173085 0.646693421 3.116146183 1.775966847 1.639010316 1.697382099 2.131559113 1 17.50496246 -10.49862105 0.193720277 9.85E-16 2.325749938 0.175649325 0.67895651 45.35989422 1.570270829 24.5185114 2.092697439 3.17E-11 10.49862105 2.325749938 GRASS(ph)HSSQTQGGGS(ph)VTKK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTKK 19 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.384)S(0.615)HS(0.001)SQTQGGGS(0.969)VT(0.03)KK;GRAS(0.395)S(0.585)HS(0.02)SQT(0.022)QGGGS(0.975)VT(0.003)KK ; 112.8 2.95E-05 194772000 193031 283610 226070 89157 473070 248220 359660 402930 236300 211130 TRUE FALSE FALSE 235970.08 316775.7224 309702.7006 94027.42115 425969.4898 261216.4154 282815.7028 304110.7857 283723.2425 158499.1766 1.488777955 1.998595383 1.953970407 0.593236023 2.687518629 1.648061656 1.784335471 1.918690004 1.790061303 1 17.27411582 -9.871605904 6.631167771 0.999999975 1.769827884 0.177120315 0.492885749 1.76E-07 3.02E-08 0.455971334 0.110589289 1.34E-10 9.871605904 0.76982791 GRASS(ph)HSSQTQGGGS(ph)VTKK ddPTM_HeLa_A486_30min_R1 4 GRASSHSSQTQGGGSVTKK 19 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.398)S(0.583)HS(0.019)S(0.006)QT(0.04)QGGGS(0.891)VT(0.063)KK;GRAS(0.347)S(0.652)HS(0.001)SQTQGGGS(0.993)VT(0.007)KK;GRAS(0.423)S(0.554)HS(0.027)S(0.01)QT(0.062)QGGGS(0.891)VT(0.034)KK;GRAS(0.427)S(0.511)HS(0.062)SQT(0.001)QGGGS(0.983)VT(0.016)KK ;;; 147.17 1.27E-08 283094000 502860 466650 338993 56215 579360 398516 524000 478337 416983 183648 TRUE FALSE FALSE 467612.1108 429670.9545 470260.1681 130871.3609 506691.2665 349351.1477 392889.6577 369430.1071 453127.4222 137661.3455 3.396829438 3.121217166 3.416065466 0.950676172 3.68070837 2.53775776 2.854030348 2.683615404 3.291609716 1 17.07076399 -10.55947904 2.911892214 0.903570895 2.854164713 0.374548798 0.728597023 71298780.04 77933623.14 53859295.73 0.177241984 2.76E-11 10.55947904 1.950593818 GRASSHS(ph)SQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 3 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.004)S(0.117)HS(0.814)S(0.065)QTQGGGSVTK;GRAS(0.006)S(0.128)HS(0.86)S(0.006)QTQGGGSVTK;GRAS(0.006)S(0.006)HS(0.908)S(0.068)QT(0.012)QGGGSVTK ;; 200.19 1.74E-25 879740000 123696 796350 417421 75809.3 483670 571807 546102 1461080 308825 126008.6 TRUE FALSE FALSE 151211.7485 889476.2052 571842.3982 79950.5701 435514.1165 601745.9303 429422.8465 1102747.839 370803.3448 94596.97504 1.598483973 9.402797551 6.045038946 0.845170473 4.603890519 6.361154044 4.539498713 11.65732666 3.919822432 1 16.52950643 -6.255793155 22.30829273 6.101889417 4.654397054 0.004633356 3.354018692 425.5946182 1681526.708 1.116570824 1.0836821 5.55E-07 6.255793155 -1.447492363 GRASSHS(ph)SQTQGGGSVTK ddPTM_HeLa_A486_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.001)S(0.007)HS(0.496)S(0.496)QTQGGGSVTK;GRAS(0.001)S(0.015)HS(0.798)S(0.186)QTQGGGSVTK ; 172.98 8.75E-13 1226580000 310518 107045 120687 1800.01 237466 44380 93918 120424 61233 46599 TRUE FALSE FALSE 288752.2917 98562.36435 167420.2385 4190.514247 207680.8 38904.84682 70418.72304 93006.08404 66540.72574 34930.30709 8.266525999 2.821686168 4.792979291 0.119967862 5.945576128 1.113784849 2.015977783 2.662618562 1.904956792 1 15.09219171 -2.42893922 0.970207973 2.326422702 200 0.528552458 1.650053778 47.95437954 1.671073008 0.493410782 19470.7929 0.003724438 2.42893922 197.6735773 GRASSHSS(ph)QTQGGGSVTK ddPTM_HeLa_A485_30min_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.007)S(0.007)HS(0.031)S(0.919)QT(0.036)QGGGSVTK;GRASS(0.001)HS(0.111)S(0.883)QT(0.005)QGGGSVTK ; 152.48 1.22E-08 1016070000 15787.2 138593 57038 7452.1 62013 98910 95031 282970 37550 10439.3 TRUE FALSE FALSE 19299.00817 154800.2458 78138.72975 7859.189353 55838.76798 104088.7747 74726.85052 213571.1638 45085.94057 7836.974631 2.46255846 19.7525516 9.970522227 1.002834604 7.125041308 13.2817547 9.53516555 27.25173602 5.752977736 1 12.93608111 -4.916863142 24.83070735 10 12.04592333 0 8.050435758 191.3868752 57141.16587 2.132000753 4.438113237 1.21E-05 4.916863142 2.045923328 GRASSHSS(ph)QTQGGGSVTK ddPTM_HeLa_A486_30min_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.008)S(0.035)HS(0.162)S(0.398)QT(0.398)QGGGSVTK 136.64 1.80E-06 171280000 46544 14792 16786 0 33704 7014.2 13602 18474 7494.8 7062.9 TRUE FALSE FALSE 43281.50595 13619.82805 23285.98874 0 29476.53004 6148.859319 10198.63573 14267.87348 8144.455299 5294.303868 8.175108009 2.572543697 4.39830983 0 5.567593167 1.161410352 1.926341212 2.694947974 1.538343001 1 12.37022529 -2.661781073 1.131775331 2.225126803 200 0.56030092 1.557669778 39.79840577 1.902750935 0.436846277 18839.44961 0.002178808 2.661781073 197.7748732 GRASSHSSQTQGGGS(ph)VTK ddPTM_HeLa_A485_30min_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRASSHSSQTQGGGS(0.999)VT(0.001)K 98.74 0.00019116 93485000 12911 102490 50710 8885.4 51408 67006 61617 167620 28498 14459 TRUE FALSE FALSE 15783.00741 114475.314 69469.73922 9370.786903 46289.63902 70514.33055 48452.02459 126510.9322 34217.2872 10854.6374 1.454033592 10.54621262 6.400005516 0.863298013 4.264503485 6.496240083 4.463716549 11.65501228 3.15231969 1 13.40602391 -6.265388887 23.86278974 5.96378714 4.91075978 0 3.608213221 1090.497918 6588718.412 1.245496407 1.140174985 5.43E-07 6.265388887 -1.05302736 GRAT(ph)PAQTPR ddPTM_HeLa_A485_30min_R1 2 GRATPAQTPR 10 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 GRAT(1)PAQTPR;GRAT(1)PAQTPR ; 74.769 0.0053699 346280000 25313 50356 63685 31619 56618 38232 41871 55944 54941 34799 TRUE FALSE FALSE 30943.78952 56244.69616 87244.73165 33346.26591 50980.91312 40233.7684 32924.9188 42223.64628 65967.15475 26124.24973 1.18448529 2.15296886 3.339607168 1.27644875 1.951478555 1.54009278 1.260320168 1.616262542 2.525131073 1 14.67310198 GRAT(ph)PAQTPR ddPTM_HeLa_A486_30min_R1 1 GRATPAQTPR 10 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 GRAT(1)PAQTPR 76.728 0.0037459 0 31084 42791 63803 7383.1 67532 30267 46228 44048 38127 34674 TRUE FALSE FALSE 28905.17212 39400.08532 88509.2303 17188.22992 59061.50685 26532.96527 34661.26545 34019.23196 41431.87906 25991.40471 1.112105038 1.515889032 3.405326926 0.661304386 2.272347628 1.020836141 1.333566455 1.308864694 1.594060787 1 14.66574699 -6.276303752 24.90721997 1.275900968 1.804635548 0.129802215 0.699854552 1755.411817 2941415.635 0.242318567 0.214580478 5.29E-07 6.276303752 0.528734579 GRDHLS(ph)GVPT(ph)DVT(ph)VT(ph)ETPEKNTESLILSLKMSSLGK ddPTM_HeLa_A486_30min_R1 1 GRDHLSGVPTDVTVTETPEKNTESLILSLKMSSLGK 36 3 I3L072;Q9BSJ5-2;Q9BSJ5-3;Q9BSJ5 I3L072 C17orf80 Uncharacterized protein C17orf80 4 0 GRDHLS(0.892)GVPT(0.475)DVT(0.475)VT(0.475)ET(0.475)PEKNT(0.475)ES(0.475)LILS(0.225)LKMS(0.028)S(0.005)LGK 43.579 0.017483 68809000 22634 12910 8263.5 21732 21856 31752 64176 58898 18044 50737 TRUE FALSE FALSE 21047.47348 11886.96458 11463.3485 50593.19427 19114.61668 27834.76107 48118.48602 45488.21113 19608.06845 38032.12496 0.553413029 0.312550629 0.301412254 1.330275243 0.502591341 0.73187499 1.26520635 1.196047057 0.515565945 1 15.21493093 -5.237989762 24.74664252 0.930016792 0.381467741 0.443723213 0.279763221 659.3508155 695819.0837 0.076763314 0.13285173 5.78E-06 5.237989762 -0.548549051 GRDS(ph)PYQS(ph)RGSPHYFS(ph)PFRPY ddPTM_HeLa_A485_30min_R1 4 GRDSPYQSRGSPHYFSPFRPY 21 3 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 3 0 GRDS(0.981)PY(0.131)QS(0.443)RGS(0.445)PHY(0.003)FS(0.998)PFRPY;GRDS(0.924)PY(0.343)QS(0.363)RGS(0.369)PHY(0.033)FS(0.967)PFRPY;GRDS(0.998)PY(0.048)QS(0.477)RGS(0.477)PHY(0.002)FS(0.998)PFRPY;GRDS(0.969)PY(0.091)QS(0.471)RGS(0.468)PHY(0.036)FS(0.964)PFRPY ;;; 127.92 1.03E-06 558650000 114292 302229 240886 145703 319291 329031 412780 713552 184439 218542 TRUE FALSE FALSE 139715.8611 337572.0525 329999.7555 153662.386 287501.2669 346258.5544 324586.1809 538552.2532 221454.2155 164063.5014 0.851596241 2.057569476 2.011414804 0.936603112 1.752377979 2.11051545 1.97841798 3.282584174 1.349807932 1 17.3238948 -6.099931895 4.479515082 2.084902328 1.525376883 0.07988726 0.670253352 0.48190848 16.19091588 0.219181115 0.221865671 7.94E-07 6.099931895 -0.559525444 GRDS(ph)PYQS(ph)RGSPHYFSPFRPY ddPTM_HeLa_A485_30min_R1 4 GRDSPYQSRGSPHYFSPFRPY 21 3 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 GRDS(0.996)PY(0.005)QS(0.659)RGS(0.338)PHY(0.002)FSPFRPY;GRDS(1)PY(0.001)QS(0.733)RGS(0.266)PHYFSPFRPY;GRDS(0.999)PY(0.001)QS(0.699)RGS(0.301)PHYFSPFRPY;GRDS(0.984)PY(0.021)QS(0.907)RGS(0.089)PHYFSPFRPY ;;; 169.44 6.04E-14 5125100000 152627 556834 346435 82432 456637 646420 673880 1452460 250315 137637 TRUE FALSE FALSE 186578.3496 621950.8925 474595.7229 86935.05143 411172.6169 680265.5516 529900.0329 1096241.908 300550.9245 103326.6289 1.805714089 6.019270143 4.593159845 0.841361538 3.979348027 6.583642172 5.128397572 10.60948101 2.908746057 1 16.65685258 -6.142161867 5.638602262 5.829181983 3.46780752 0.082395095 2.706733114 0.459096087 19.45006543 0.873565301 0.875628777 7.21E-07 6.142161867 -2.361374462 GRDS(ph)PYQS(ph)RGSPHYFSPFRPY ddPTM_HeLa_A486_30min_R1 4 GRDSPYQSRGSPHYFSPFRPY 21 3 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 GRDS(0.996)PY(0.015)QS(0.733)RGS(0.257)PHYFSPFRPY;GRDS(0.985)PY(0.016)QS(0.608)RGS(0.372)PHY(0.02)FSPFRPY;GRDS(0.997)PY(0.023)QS(0.619)RGS(0.361)PHYFSPFRPY;GRDS(0.996)PY(0.006)QS(0.633)RGS(0.365)PHYFSPFRPY ;;; 147.25 1.02E-09 1260560000 260098 224601 284623 87976 591490 209068 381310 415717 170896 283697 TRUE FALSE FALSE 241866.4733 206802.7988 394836.6481 204812.5741 517299.8088 183275.3158 285902.2049 321067.3141 185709.4029 212657.4246 1.137352593 0.972469215 1.856679346 0.963110385 2.432549955 0.861833609 1.344426161 1.509786525 0.873279657 1 17.6981717 -7.765892474 24.96686056 0.936639595 1.388856412 0.136698223 0.45038062 227.0624684 1272975.837 0.369117955 0.1081174 1.71E-08 7.765892474 0.452216817 GRDS(ph)PYQSR ddPTM_HeLa_A485_30min_R1 8 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(0.999)PY(0.001)QSR;GRDS(1)PYQSR;GRDS(0.993)PY(0.007)QSR;GRDS(1)PYQSR;GRDS(1)PYQSR ;;;;;;; 195.09 2.47E-09 29947580000 224181.7 302808 325719.8 231645.6 271223 251288 242689.5 242382.1 297232.5 276730.6 TRUE FALSE FALSE 274050.1457 338218.7615 446217.1084 244299.8126 244219.0858 264445.0511 190836.9057 182937.5099 356884.3364 207746.7543 1.319154885 1.628033914 2.147889674 1.175950081 1.175561499 1.272920254 0.918603549 0.880579389 1.717881647 1 17.66446641 -5.389606217 10.02502141 1.15100478 1.690895113 0.417745298 0.289449028 0.368203658 27.97387492 0.081367663 0.120720168 4.08E-06 5.389606217 0.539890333 GRDS(ph)PYQSR ddPTM_HeLa_A486_30min_R1 6 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GRDS(0.562)PYQS(0.438)R;GRDS(0.675)PYQS(0.325)R;GRDS(1)PYQSR;GRDS(1)PYQSR;GRDS(0.999)PYQS(0.001)R;GRDS(1)PYQSR ;;;;; 113.24 0.00038152 27085060000 1924563.5 2236990 1865716.6 575214.8 1954868 1769168.1 1811113 1873699.7 1754581.6 1958145.7 TRUE FALSE FALSE 1789661.537 2059722.765 2588172.033 1339129.124 1709670.227 1550906.127 1357953.371 1447099.181 1906670.146 1467813.271 1.219270579 1.403259397 1.763284257 0.912329348 1.164773654 1.056609964 0.925154036 0.985887789 1.298986856 1 20.48523702 -5.276980666 24.9997554 1.048485426 1.456070234 0.570286706 0.164195604 566.3008589 910951.7352 0.046350128 0.069023395 5.28E-06 5.276980666 0.407584807 GRDS(ph)YGGPPR ddPTM_HeLa_A485_30min_R1 2 GRDSYGGPPR 10 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GRDS(1)YGGPPR;GRDS(1)YGGPPR ; 136.27 1.99E-05 945180000 155474 202580 186521 172606 220650 194500 220730 211120 205482 221350 TRUE FALSE FALSE 190058.6549 226269.9688 255522.8797 182035.0287 198681.3113 204683.7192 173569.2323 159342.489 246720.3526 166171.5186 1.143749882 1.361665168 1.53770563 1.095464675 1.19563998 1.231761742 1.044518542 0.95890373 1.484733092 1 17.3423136 -5.29059005 24.8376318 1.144328707 1.349102799 0.242109712 0.164807217 887.8076214 756448.5166 0.045739894 0.067856112 5.12E-06 5.29059005 0.204774093 GRDS(ph)YGGPPR ddPTM_HeLa_A486_30min_R1 2 GRDSYGGPPR 10 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GRDS(1)YGGPPR;GRDS(1)YGGPPR ; 104.94 0.00048119 643910000 125599 143007 129479 42019 156861 120781 148751 141945 120693 158118 TRUE FALSE FALSE 116795.1587 131674.6045 179616.7364 97822.35552 137186.0307 105880.2682 111531.9265 109627.2221 131154.7664 118524.2236 0.985411717 1.110950998 1.515443264 0.825336396 1.157451418 0.893321762 0.941005333 0.924935163 1.106565075 1 16.85482242 -5.297452644 24.99997837 0.977606651 1.194637433 0.309686475 0.154134796 707.5600305 491178.2485 0.042841437 0.063546372 5.04E-06 5.297452644 0.217030782 GRDS(ph)YGGPPRR ddPTM_HeLa_A486_30min_R1 2 GRDSYGGPPRR 11 2 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 GRDS(0.992)Y(0.008)GGPPRR;GRDS(0.995)Y(0.005)GGPPRR ; 70.628 0.00589 50542000 27114 28959 35635 12566.5 41238 27968 34113 39972 29343 35606 TRUE FALSE FALSE 25213.44862 26664.18337 49433.82634 29255.44708 36065.54551 24517.59252 25577.56659 30871.24818 31886.47487 26690.02584 0.944676815 0.999031756 1.852146065 1.096119099 1.351274282 0.91860505 0.958319289 1.15665861 1.19469629 1 14.70401308 -6.254722994 24.91980322 1.049988475 1.259835608 0.142848713 0.247754336 1089.302396 4041639.411 0.085535332 0.083689956 5.56E-07 6.254722994 0.209847133 GRDSPYQS(ph)R ddPTM_HeLa_A485_30min_R1 2 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GRDS(0.211)PYQS(0.789)R;GRDS(0.297)PYQS(0.703)R ; 114.89 0.0094864 37044000000 2301100 2987400 3019600 2125600 2799400 2533300 2602300 2419100 2632800 2862800 TRUE FALSE FALSE 2812971.756 3336750.443 4136675.696 2241716.146 2520681.907 2665939.671 2046297.346 1825811.932 3161178.811 2149156.646 1.308872372 1.552585964 1.924790221 1.043067824 1.172870257 1.240458519 0.952139692 0.849548094 1.470892695 1 21.03533921 -5.283656618 24.93306618 1.100081125 1.591133185 0.528012563 0.212816745 576.3265967 646775.2585 0.060027541 0.089115823 5.20E-06 5.283656618 0.49105206 GRDSPYQS(ph)R ddPTM_HeLa_A486_30min_R1 1 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GRDS(0.05)PYQS(0.95)R 99.752 0.026449 15746000000 3428600 4053000 3308700 1061800 3595500 3053000 3440100 3140600 3237200 3422600 TRUE FALSE FALSE 3188272.845 3731825.519 4589917.25 2471924.06 3144518.863 2676351.901 2579350.594 2425553.939 3517803.102 2565558.683 1.242720686 1.454585913 1.78905175 0.963503223 1.225666318 1.043184831 1.005375793 0.94542914 1.371164545 1 21.29084159 -5.277964295 24.9890069 1.078442808 1.49136612 0.545776155 0.174009735 585.0453333 884705.2747 0.048545515 0.072232133 5.27E-06 5.277964295 0.412923311 GRECS(ph)PTSSLER ddPTM_HeLa_A485_30min_R1 2 GRECSPTSSLER 12 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 GRECS(0.94)PT(0.02)S(0.02)S(0.019)LER;GRECS(0.843)PT(0.113)S(0.039)S(0.005)LER ; 97.129 0.00067794 1440650000 671950 980730 1117810 736930 1269910 908050 1001780 1085530 945050 922260 TRUE FALSE FALSE 821422.9593 1095417.842 1531334.435 777186.6199 1143473.301 955594.0939 787741.5192 819302.0655 1134712.866 692357.5549 1.18641438 1.582156264 2.211768217 1.122522047 1.651564706 1.380203173 1.137766915 1.183351087 1.638911655 1 19.40115776 -6.47810418 4.807422429 1.254493908 1.563718009 0.176389823 0.315726938 0.381867801 20.16484886 0.116849873 0.099007028 3.33E-07 6.47810418 0.309224102 GRECS(ph)PTSSLER ddPTM_HeLa_A486_30min_R1 2 GRECSPTSSLER 12 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 GRECS(0.938)PT(0.021)S(0.021)S(0.019)LER;GRECS(0.863)PT(0.074)S(0.022)S(0.041)LER ; 107.73 0.00024167 1581690000 784040 1050720 989850 339210 1350040 832240 1010650 1040040 835570 951610 TRUE FALSE FALSE 729082.8448 967457.1205 1373146.429 789698.0227 1180705.395 729566.6904 757774.6804 803245.5959 907997.8804 713320.6621 1.02209691 1.356272392 1.925005824 1.107072968 1.655223881 1.022775211 1.062319824 1.126065231 1.272916836 1 19.44419124 -6.280017784 24.64005929 1.102538506 1.421409299 0.287437989 0.248768059 926.1397549 1228311.384 0.087078752 0.07693916 5.25E-07 6.280017784 0.318870794 GREDVSNFDDEFT(ph)SEAPILTPPREPR ddPTM_HeLa_A486_30min_R1 1 GREDVSNFDDEFTSEAPILTPPREPR 26 2 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 GREDVSNFDDEFT(0.787)S(0.188)EAPILT(0.025)PPREPR 135.7 1.64E-05 5584400000 82454 98904 83965 31202 112700 82046 98282 106650 76364 86884 TRUE FALSE FALSE 76674.40039 91066.48684 116478.4967 72639.83286 98564.11511 71923.9987 73690.80408 82368.12315 82983.29301 65127.68088 1.177293577 1.398276211 1.788463754 1.115344994 1.513398202 1.104353751 1.131482084 1.264717583 1.27416318 1 15.99098323 -6.267954175 24.88532451 1.170021838 1.40446751 0.296404845 0.186835471 686.1146382 2620824.631 0.064859837 0.058553409 5.40E-07 6.267954175 0.234445673 GREDVSNFDDEFTSEAPILT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 GREDVSNFDDEFTSEAPILTPPR 23 1 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 GREDVSNFDDEFTSEAPILT(1)PPR 144.12 2.57E-09 50111000 22644 24744 31387 26125 22098 22511 22644 19502 24312 29337 TRUE FALSE FALSE 27681.07968 27637.59556 42998.35742 27552.1426 19897.84553 23689.64115 17805.92442 14719.10392 29191.1954 22023.82581 1.256869716 1.254895303 1.952356407 1.251015279 0.903469075 1.075636965 0.808484619 0.668326387 1.325437081 1 14.42677748 -5.580054234 4.77425857 0.948763925 1.485560492 0.486279486 0.242491279 0.166599424 7.851433319 0.073036315 0.096594749 2.63E-06 5.580054234 0.536796567 GREDVSNFDDEFTSEAPILT(ph)PPR ddPTM_HeLa_A486_30min_R1 1 GREDVSNFDDEFTSEAPILTPPR 23 1 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 GREDVSNFDDEFT(0.007)S(0.006)EAPILT(0.987)PPR 53.679 0.0029606 0 21768 27539 21878 8441.6 23664 20576 27455 23825 22895 25362 TRUE FALSE FALSE 20242.17561 25356.70934 30349.74751 19652.47141 20695.84046 18037.54232 20585.46861 18400.5676 24879.55703 19011.19012 1.064750575 1.333778116 1.596414918 1.033731781 1.088613618 0.948785542 1.082807993 0.967880889 1.308679618 1 14.21456123 -5.309099314 24.88207169 1.057482676 1.331861233 0.399952113 0.151579292 354.4649377 185056.6571 0.042327769 0.062782421 4.91E-06 5.309099314 0.274378558 GREDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_HeLa_A485_30min_R1 7 GREDVSNFDDEFTSEAPILTPPREPR 26 2 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 GREDVS(0.001)NFDDEFT(0.008)S(0.008)EAPILT(0.984)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFT(0.003)S(0.007)EAPILT(0.99)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(0.999)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR ;;;;;; 211.87 7.15E-29 40672400000 755051 1069760 1155780 759673 1214413 1010237 1111835 1290752 1035674 1061232 TRUE FALSE FALSE 923009.4901 1194859.126 1583351.118 801172.0124 1093501.778 1063131.447 874282.3694 974193.0482 1243524.272 796686.3929 1.158560631 1.499786035 1.987420812 1.005630345 1.372562388 1.334441578 1.097398396 1.222806184 1.560870479 1 19.60365241 -5.290722252 24.99368452 1.242014055 1.543709218 0.260350173 0.247009053 983.8645435 839751.568 0.069372167 0.102912511 5.12E-06 5.290722252 0.301695163 GREDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_HeLa_A486_30min_R1 8 GREDVSNFDDEFTSEAPILTPPREPR 26 2 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFT(0.001)S(0.001)EAPILT(0.999)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFT(0.019)S(0.019)EAPILT(0.963)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR ;;;;;;; 236.31 2.55E-49 34222380000 717095 911287 860430 280356 1052699 756451 818328 898526 781551 829322 TRUE FALSE FALSE 666830.3436 839073.2993 1193611.539 652682.9364 920659.6754 663127.7667 613573.679 693951.2445 849296.47 621654.3732 1.072670558 1.349742454 1.920056531 1.049912885 1.480983188 1.066714553 0.987001307 1.116297535 1.366187558 1 19.24575317 -6.268509348 24.64961397 1.106993845 1.38554493 0.228597533 0.245228149 716.959712 2499690.089 0.086318977 0.07773192 5.39E-07 6.268509348 0.278551085 GREETVAEDVCIDLTCDSGSQAVPS(ph)PATR ddPTM_HeLa_A485_30min_R1 4 GREETVAEDVCIDLTCDSGSQAVPSPATR 29 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GREETVAEDVCIDLTCDSGSQAVPS(1)PATR;GREETVAEDVCIDLTCDSGSQAVPS(1)PATR;GREETVAEDVCIDLTCDSGSQAVPS(0.959)PAT(0.041)R;GREETVAEDVCIDLTCDSGSQAVPS(0.835)PAT(0.165)R ;;; 229.87 2.82E-39 1526920000 613500 633340 1031870 810520 1170890 590750 847660 804350 973700 1186890 TRUE FALSE FALSE 749970.9585 707403.6037 1413601.653 854796.6553 1054312.08 621680.7565 666550.5163 607081.9013 1169112.659 891020.1661 0.841699197 0.793925469 1.586497934 0.959346026 1.183263994 0.697717942 0.74807568 0.681333515 1.312105722 1 19.76509856 -6.252015296 24.77486145 0.859194232 1.079664848 0.102076693 0.267465008 1277.149317 3357483.599 0.089896465 0.088726537 5.60E-07 6.252015296 0.220470615 GREETVAEDVCIDLTCDSGSQAVPS(ph)PATR ddPTM_HeLa_A486_30min_R1 5 GREETVAEDVCIDLTCDSGSQAVPSPATR 29 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GREETVAEDVCIDLTCDSGSQAVPS(0.991)PAT(0.009)R;GREETVAEDVCIDLTCDSGSQAVPS(0.986)PAT(0.014)R;GREETVAEDVCIDLTCDSGSQAVPS(0.831)PAT(0.169)R;GREETVAEDVCIDLTCDS(0.001)GS(0.001)QAVPS(0.965)PAT(0.033)R;GREETVAEDVCIDLTCDSGSQAVPS(0.821)PAT(0.179)R ;;;; 145.6 1.61E-09 2074550000 377184 609057 630138 383476 772646 582269 724337 715398 517716 532333 TRUE FALSE FALSE 350745.3494 560793.1052 874144.3093 892751.5078 675733.534 510434.5709 543100.2213 552517.4924 562592.0397 399033.3519 0.878987553 1.40537903 2.190654754 2.237285439 1.693426203 1.279177714 1.361039669 1.38463988 1.409887261 1 18.60614981 -6.24086493 7.644696881 1.315431476 1.725803614 0.209312355 0.376163969 0.3595273 106.0073049 0.138284947 0.134922022 5.74E-07 6.24086493 0.410372138 GREEYEGPNKK(ac)PR ddPTM_HeLa_A485_30min_R1 1 GREEYEGPNKKPR 13 3 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 GREEYEGPNK(0.127)K(0.873)PR 93.228 0.010129 76622000 66533 235680 315580 63940 307760 241680 192100 356490 553120 98860 FALSE TRUE FALSE 81333.03631 263240.7259 432326.1744 67432.8803 277118.3338 254333.9911 151056.2657 269060.2685 664126.1105 74216.02138 1.095895937 3.546952814 5.825240512 0.908602739 3.733942195 3.42694187 2.035359251 3.625366377 8.948554478 1 16.17944304 -7.541949206 24.99717398 5.411838659 3.029328368 0.108110523 2.234634843 433.5507966 568278.5796 1.40112641 0.529735968 2.87E-08 7.541949206 -2.382510291 GREEYEGPNKKPR ddPTM_HeLa_A486_30min_R1 1 GREEYEGPNKKPR 13 3 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 88.087 0.0012649 88906000 30154 34144 23705 22904 32512 35619 41441 35129 24488 40648 FALSE FALSE TRUE 28040.36032 31438.30509 32884.21084 53321.6695 28434.0418 31224.68993 31072.02348 27130.89356 26610.63956 30469.47623 0.92027707 1.031796702 1.079250939 1.750002826 0.93319759 1.02478591 1.019775439 0.890428616 0.87335402 1 14.89507708 GRES(ph)DEDT(ph)EDAS(ph)ETDLAKHDEEDYVEMK ddPTM_HeLa_A485_30min_R1 2 GRESDEDTEDASETDLAKHDEEDYVEMK 28 2 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 3 0 GRES(0.999)DEDT(0.997)EDAS(0.884)ET(0.12)DLAKHDEEDYVEMK;GRES(1)DEDT(1)EDAS(0.987)ET(0.013)DLAKHDEEDYVEMK ; 169.22 7.24E-14 3342500000 323250 254361 164852 539540 337370 371990 542740 527170 255345 796760 TRUE FALSE FALSE 395155.8473 284106.3063 225837.6149 569013.704 303780.2582 391466.8212 426779.1652 397880.7309 306590.3993 598142.3953 0.660638421 0.474981056 0.377564969 0.95130141 0.507872809 0.654470949 0.713507634 0.665193997 0.512570923 1 19.19012945 -14 0.274642867 3.687298864 0.589116412 0.363010562 0.151765182 243.8735568 2.358373345 373.0025664 0.181560386 1.00E-14 14 -3.098182452 GRES(ph)DEDT(ph)EDAS(ph)ETDLAKHDEEDYVEMK ddPTM_HeLa_A486_30min_R1 3 GRESDEDTEDASETDLAKHDEEDYVEMK 28 2 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 3 0 GRES(1)DEDT(1)EDAS(0.883)ET(0.117)DLAKHDEEDYVEMK;GRES(1)DEDT(0.999)EDAS(0.944)ET(0.057)DLAKHDEEDYVEMK;GRES(1)DEDT(1)EDAS(0.55)ET(0.451)DLAKHDEEDYVEMK ;; 134.19 4.56E-06 1845230000 951830 880630 469108 667712 854081 1229420 1581200 1443860 716545 1830120 TRUE FALSE FALSE 885111.6323 810845.6716 650759.1807 1554467.28 746954.197 1077746.66 1185567.036 1115124.597 778655.6975 1371846.04 0.645197498 0.591061714 0.474367503 1.133120799 0.544488357 0.785617794 0.864212894 0.812864246 0.567597001 1 20.38768715 -13.99999691 0.038979841 2.198781943 7.27E-11 0.184954475 0.18382698 1556.044642 4.524529661 226.6138863 70.11735955 1.00E-14 13.99999691 -2.198781943 GRES(ph)PAAGPR ddPTM_HeLa_A485_30min_R1 1 GRESPAAGPR 10 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 GRES(1)PAAGPR 97.273 0.0010312 2078400000 180390 318120 336850 263920 317480 313640 299040 426590 329620 305940 TRUE FALSE FALSE 220517.1332 355321.3667 461464.8325 278337.2813 285870.5765 330061.7054 235147.6611 321968.1336 395771.7105 229674.7884 0.96012773 1.547062998 2.009209786 1.211875641 1.244675475 1.437082876 1.023828792 1.401843606 1.723183085 1 17.80923297 GRES(ph)PAAGPR ddPTM_HeLa_A486_30min_R1 2 GRESPAAGPR 10 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 GRES(1)PAAGPR;GRES(1)PAAGPR ; 119.88 0.00013368 3034800000 275930 298460 274340 117390 354150 247400 283030 306400 237380 321670 TRUE FALSE FALSE 256588.7319 274808.9426 380571.7951 273289.8526 309729.2047 216878.3034 212212.9004 236639.4087 257956.2895 241121.7383 1.064145994 1.139710358 1.5783388 1.133410262 1.284534555 0.899455623 0.880106878 0.981410512 1.069817642 1 17.8794022 -6.258656556 24.95484489 0.95961808 1.247326637 0.491813566 0.139017249 210.3793464 1886569.801 0.04840544 0.04635664 5.51E-07 6.258656556 0.287708557 GREVS(ph)PSDVR ddPTM_HeLa_A485_30min_R1 3 GREVSPSDVR 10 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 GREVS(0.998)PS(0.002)DVR;GREVS(0.997)PS(0.003)DVR;GREVS(0.993)PS(0.007)DVR ;; 75.695 0.0050385 1386280000 922600 1660630 1494910 825910 1543950 1117830 1279900 1675700 1395890 1380490 TRUE FALSE FALSE 1127829.187 1854826.233 2047939.417 871027.372 1390228.917 1176357.85 1006438.909 1264731.948 1676032.319 1036359.249 1.08826084 1.789752187 1.97609026 0.840468566 1.341454634 1.135086942 0.971129374 1.220360554 1.617231014 1 19.98309276 -5.26239272 24.9998845 1.168551037 1.635206195 0.340097377 0.29142274 96.67943268 2535292.103 0.080803689 0.128092312 5.47E-06 5.26239272 0.466655158 GREVS(ph)PSDVR ddPTM_HeLa_A486_30min_R1 4 GREVSPSDVR 10 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 GREVS(0.995)PS(0.005)DVR;GREVS(0.994)PS(0.006)DVR;GREVS(0.954)PS(0.046)DVR;GREVS(0.973)PS(0.027)DVR ;;; 71.548 0.0063181 1495880000 1764655 1750591 1516837 418338.5 1635737 1322004 1566997 1428647 1248010 1617020 TRUE FALSE FALSE 1640961.797 1611867.794 2104196.909 973913.1697 1430567.613 1158908.588 1174917.777 1103375.265 1356188.512 1212107.667 1.353808611 1.32980579 1.735981849 0.803487344 1.180231469 0.956110269 0.969317998 0.910294766 1.118868025 1 20.20908642 -5.268054868 24.99999943 0.992953503 1.458859458 0.708877425 0.141460449 271.6877671 1026710.654 0.03831637 0.058352583 5.39E-06 5.268054868 0.465905955 GRGFGS(ph)EEGSR ddPTM_HeLa_A485_30min_R1 2 GRGFGSEEGSR 11 1 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 GRGFGS(0.662)EEGS(0.338)R;GRGFGS(0.92)EEGS(0.08)R ; 125.73 2.93E-05 2256800000 314810 638870 580770 280540 580930 590320 710660 897860 488760 414360 TRUE FALSE FALSE 384838.3984 713580.2891 795620.9909 295865.1898 523090.5694 621228.2424 558821.6854 677658.4272 586849.6488 311067.6777 1.237153282 2.293971184 2.55771026 0.951128037 1.681597308 1.997083872 1.79646336 2.178491935 1.886565821 1 18.24686897 -5.226676247 24.99829007 1.713650484 2.05604721 0.103566097 0.490285254 1622.550993 1166780.497 0.133827757 0.23178437 5.93E-06 5.226676247 0.342396726 GRGFGS(ph)EEGSR ddPTM_HeLa_A486_30min_R1 2 GRGFGSEEGSR 11 1 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 GRGFGS(0.949)EEGS(0.051)R;GRGFGS(0.993)EEGS(0.007)R ; 138.97 5.05E-06 1389890000 263240 267830 277410 86041 344830 209650 294670 310350 221240 283020 TRUE FALSE FALSE 244788.2354 246606.1754 384830.5813 200307.7963 301578.206 183785.5146 220940.4493 239690.0799 240417.2613 212149.9498 1.153845361 1.162414488 1.813955561 0.944180267 1.421533242 0.866300061 1.041435312 1.129814455 1.133242131 1 17.69472481 GRGGPES(ph)PPSNR ddPTM_HeLa_A485_30min_R1 2 GRGGPESPPSNR 12 1 Q6ZW31;Q6ZW31-2;M0QXZ8 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 1 0 GRGGPES(0.997)PPS(0.003)NR;GRGGPES(0.994)PPS(0.006)NR ; 80.387 0.0029029 897040000 262600 461990 427470 317350 550100 406030 461670 529660 416730 407880 TRUE FALSE FALSE 321014.464 516015.7117 585608.9415 334686.0269 495330.1125 427289.103 363030.433 399760.0545 500363.8885 306203.0225 1.048371311 1.685207767 1.91248583 1.093019998 1.61765259 1.395443779 1.18558736 1.305539218 1.634091932 1 18.224129 -6.522449008 24.72982633 1.304444694 1.488701126 0.087385961 0.282979302 37.58347689 2163121.707 0.106244008 0.083290296 3.00E-07 6.522449008 0.184256433 GRGGPES(ph)PPSNR ddPTM_HeLa_A486_30min_R1 2 GRGGPESPPSNR 12 1 Q6ZW31;Q6ZW31-2;M0QXZ8 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 1 0 GRGGPES(0.995)PPS(0.005)NR;GRGGPES(0.978)PPS(0.022)NR ; 63.212 0.011209 553820000 263270 294230 359600 131894 426600 300450 342480 370420 256600 350050 TRUE FALSE FALSE 244816.1325 270914.1432 498846.7504 307055.8976 373091.8501 263383.5338 256787.8816 286083.4522 278842.2946 262395.2016 0.933005372 1.032466073 1.901127564 1.170203936 1.421869942 1.003766579 0.97863025 1.090276996 1.062680617 1 18.00138181 -6.273772859 24.38713051 1.029685638 1.304434235 0.222582761 0.246717982 897.8582398 1775339.538 0.089771197 0.079771189 5.32E-07 6.273772859 0.274748597 GRGGS(ph)GGGGGGGGGGYNR ddPTM_HeLa_A485_30min_R1 1 GRGGSGGGGGGGGGGYNR 18 1 H3BPE7;P35637-2;P35637;H3BNZ4 H3BPE7 FUS RNA-binding protein FUS 1 0 GRGGS(1)GGGGGGGGGGYNR 47.499 0.025032 31579000 15213 23154 17667 22883 17319 21832 21804 27205 18524 19973 TRUE FALSE FALSE 18597.07937 25861.65889 24202.75849 24133.04035 15594.65955 22975.08976 17145.39728 20532.93109 22241.59689 14994.09868 1.240293249 1.724789162 1.614152275 1.60950257 1.040053149 1.532275481 1.143476353 1.369400825 1.48335671 1 13.87210718 -5.72907952 24.99986707 1.287541838 1.564653981 0.320119454 0.201231104 234.7209036 181334.4847 0.05654989 0.072999631 1.87E-06 5.72907952 0.277112143 GRGPS(ph)PEGSSSTESSPEHPPK ddPTM_HeLa_A486_30min_R1 1 GRGPSPEGSSSTESSPEHPPK 21 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GRGPS(1)PEGSSSTESSPEHPPK 140.55 5.57E-08 455030000 138090 155920 109570 8837.7 155600 133700 146820 137870 131100 106630 TRUE FALSE FALSE 128410.6041 143564.3313 151998.4384 20574.61223 136083.1971 117205.4534 110084.0831 106480.0107 142463.8536 79929.15396 1.606555277 1.796144764 1.901664547 0.257410609 1.702547698 1.466366746 1.377270716 1.332179879 1.782376599 1 16.2864342 GRGS(ph)WGGR ddPTM_HeLa_A485_30min_R1 3 GRGSWGGR 8 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 GRGS(1)WGGR;GRGS(1)WGGR;GRGS(1)WGGR ;; 89.827 0.0019356 465260000 137808 175815 210895 138550 235018 180064 207641 230598 172565 191686 TRUE FALSE FALSE 168462.9142 196375.0349 288913.8366 146118.6357 211618.7827 189491.8726 163276.8041 174043.4789 207197.2126 143902.2079 1.170676368 1.364642264 2.007709546 1.015402319 1.470573564 1.316810043 1.13463724 1.209456627 1.439847349 1 17.1347292 -6.10328188 1.149715055 1.215948977 1.4491275 0.115028172 0.261980283 1.107940752 3.065135567 0.127665387 0.133386527 7.88E-07 6.10328188 0.233178523 GRGS(ph)WGGR ddPTM_HeLa_A486_30min_R1 3 GRGSWGGR 8 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 GRGS(1)WGGR;GRGS(1)WGGR;GRGS(1)WGGR ;; 97.452 0.0012992 524350000 94334 109152 109852 36664 132875 90242 108738 113851 91676 103762 TRUE FALSE FALSE 87721.67374 100502.398 152389.6363 85355.6449 116208.5785 79108.85955 81530.60229 87929.61265 99622.54949 77779.31982 1.12782773 1.29214807 1.95925648 1.097407963 1.494080673 1.017093743 1.048229818 1.130501178 1.280835956 1 16.247099 -6.262270459 24.99831196 1.100544563 1.403387518 0.287294841 0.235023179 104.0589541 3129985.423 0.081019922 0.075647625 5.47E-07 6.262270459 0.302842955 GRIEAVAS(ph)SSLQGLR ddPTM_HeLa_A485_30min_R1 5 GRIEAVASSSLQGLR 15 1 Q9GZU5 Q9GZU5 NYX Nyctalopin 1 0 GRIEAVAS(0.558)S(0.432)S(0.01)LQGLR;GRIEAVAS(0.493)S(0.493)S(0.013)LQGLR;GRIEAVAS(0.494)S(0.494)S(0.012)LQGLR;GRIEAVAS(0.495)S(0.495)S(0.01)LQGLR;GRIEAVAS(0.494)S(0.494)S(0.012)LQGLR ;;;; 63.918 0.011679 812764000 95276.7 712675 1240703 54459.7 607250 426356 290376 374257 662033 83890.1 TRUE FALSE FALSE 116470.6732 796016.1418 1699690.67 57434.69551 546790.0578 448679.3409 228334.7954 282469.8839 794896.9506 62977.84195 1.849391303 12.6396224 26.98870931 0.911982592 8.682260949 7.124400058 3.625637024 4.485226473 12.62185121 1 15.9425567 GRIEAVAS(ph)SSLQGLR ddPTM_HeLa_A486_30min_R1 1 GRIEAVASSSLQGLR 15 1 Q9GZU5 Q9GZU5 NYX Nyctalopin 1 0 GRIEAVAS(0.495)S(0.495)S(0.01)LQGLR 63.918 0.011679 83112000 12650 44506 185890 1684.3 90417 10100 19822 26473 48091 3783.3 TRUE FALSE FALSE 11763.30032 40979.18247 257871.5863 3921.13552 79076.05675 8853.964689 14862.32594 20445.6758 52259.5666 2835.937055 4.147941261 14.44996193 90.92994002 1.382659574 27.8835726 3.122059664 5.240710797 7.209495629 18.42761866 1 11.4696098 GRIS(ph)TPERK ddPTM_HeLa_A485_30min_R1 1 GRISTPERK 9 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 GRIS(0.5)T(0.5)PERK 60.301 0.022036 92880000 69868 127870 79133 57410 129820 159070 183730 285460 95601 79341 TRUE FALSE FALSE 85409.89556 142823.2842 108407.5897 60546.16293 116894.665 167398.6592 144474.5846 215450.4874 114787.2438 59562.74886 1.433948184 2.397862538 1.820056861 1.016510555 1.962546511 2.810458927 2.425586248 3.617201884 1.927164981 1 15.86212272 -6.071325605 5.958925486 2.516383843 1.701989079 0.156275794 0.706828134 0.340152885 21.90606158 0.226485054 0.228692897 8.49E-07 6.071325605 -0.814394764 GRIST(ph)PERK ddPTM_HeLa_A485_30min_R1 2 GRISTPERK 9 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 GRIS(0.035)T(0.965)PERK;GRIS(0.159)T(0.841)PERK ; 115.92 0.00064429 209111000 42941 95247 61830 49872 88535 97213 124159 189206 54449 56252 TRUE FALSE FALSE 52493.07731 106385.3081 84703.48996 52596.38108 79720.14453 102302.9224 97631.41536 142802.9318 65376.41486 42229.41164 1.243045434 2.519223072 2.005793751 1.245491685 1.887787242 2.422551449 2.31192933 3.381598897 1.548125165 1 15.36596053 -6.170772223 5.714417141 2.291633334 1.797902865 0.039216099 0.678707726 0.545958013 27.41846562 0.219279843 0.219226025 6.75E-07 6.170772223 -0.49373047 GRIST(ph)PERK ddPTM_HeLa_A486_30min_R1 1 GRISTPERK 9 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 GRIS(0.043)T(0.957)PERK 68.515 0.015607 70534000 34262 23334 19597 15534 32373 21937 37513 34004 16780 44164 TRUE FALSE FALSE 31860.41073 21484.92886 27185.48323 36163.93704 28312.47647 19230.63598 28126.85063 26262.0315 18234.50391 33105.04694 0.96240343 0.648992551 0.821188481 1.09239951 0.855231425 0.580897409 0.849624248 0.793293891 0.550807372 1 15.01476356 -6.030507866 24.84341259 0.744606415 0.874547761 0.126578916 0.158708593 1335.619598 1087629.638 0.0521904 0.052260327 9.32E-07 6.030507866 0.129941347 GRKDDDS(ph)DDESQSSHTGK ddPTM_HeLa_A485_30min_R1 5 GRKDDDSDDESQSSHTGK 18 2 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 GRKDDDS(1)DDESQSSHTGK;GRKDDDS(1)DDESQSSHTGK;GRKDDDS(1)DDESQSSHTGK;GRKDDDS(0.999)DDESQSSHTGK;GRKDDDS(0.956)DDES(0.03)QS(0.006)S(0.008)HTGK ;;;; 236.04 1.34E-45 900866000 446456 479985 244342.5 559102 395014 499188 695927 900477 451331 859088 TRUE FALSE FALSE 545768.5969 536115.0704 334734.9587 589644.3265 355685.0192 525324.7118 547236.5112 679633.6039 541908.9918 644933.1719 0.846240542 0.831272283 0.519022704 0.914271978 0.551506783 0.814541312 0.848516614 1.053804694 0.840256038 1 19.29879015 -6.856960259 2.521612558 0.958894946 0.73475455 0.368224248 0.128326928 0.299633823 3.862584182 0.060191031 0.037501959 1.39E-07 6.856960259 -0.224140396 GRKDDDS(ph)DDESQSSHTGK ddPTM_HeLa_A486_30min_R1 3 GRKDDDSDDESQSSHTGK 18 2 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 GRKDDDS(1)DDESQSSHTGK;GRKDDDS(0.675)DDES(0.108)QS(0.108)S(0.108)HT(0.001)GK;GRKDDDS(0.998)DDES(0.001)QSSHTGK ;; 313.29 1.51E-89 765240000 896683 270010 360166 99382.2 350578 1084492 896368 686055 746419 951640 TRUE FALSE FALSE 833830.1522 248613.4242 499631.9208 231366.7841 306605.2382 950698.4033 672087.2456 529855.253 811119.1999 713343.1499 1.168904688 0.348518696 0.700408942 0.324341496 0.429814513 1.332736431 0.942165416 0.742777516 1.137067343 1 19.44423672 -6.246096858 24.9957145 1.009323956 0.571624109 0.402164763 0.264749435 839.8171415 1368213.173 0.086187032 0.085875327 5.67E-07 6.246096858 -0.437699847 GRKDDDSDDES(ph)QSSHTGK ddPTM_HeLa_A485_30min_R1 1 GRKDDDSDDESQSSHTGK 18 2 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 GRKDDDS(0.393)DDES(0.518)QS(0.077)S(0.012)HTGK 94.201 0.00026263 177520000 35707 38008 19028 45403 30780 39374 54552 63941 29943 69643 TRUE FALSE FALSE 43649.89896 42452.70497 26067.24902 47883.25092 27715.43512 41435.56176 42896.51955 48259.36949 35952.28545 52282.28178 0.834888943 0.811990287 0.498586675 0.915860006 0.530111429 0.792535451 0.820479101 0.923054003 0.687657161 1 15.67403449 -6.51552348 22.19194242 0.8449744 0.716169809 0.175530949 0.141629872 147.1215009 443899.2986 0.050175703 0.04065867 3.05E-07 6.51552348 -0.128804591 GRKDDDSDDES(ph)QSSHTGK ddPTM_HeLa_A486_30min_R1 1 GRKDDDSDDESQSSHTGK 18 2 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 GRKDDDS(0.326)DDES(0.669)QS(0.005)SHTGK 214.79 6.79E-27 201430000 339530 102860 145190 32310 126910 401660 340140 241310 274260 351710 TRUE FALSE FALSE 315730.7003 94708.99899 201411.4563 75219.31286 110991.7644 352107.273 255033.3744 186368.9808 298033.0776 263639.5268 1.19758484 0.359236721 0.763965323 0.285311212 0.420998193 1.335563287 0.967356365 0.706908342 1.130456731 1 18.00820716 -6.246856886 24.99623706 1.005944946 0.58276678 0.358370514 0.281166785 918.161123 1573845.146 0.091952359 0.091578167 5.66E-07 6.246856886 -0.423178166 GRLDS(ph)SEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_HeLa_A486_30min_R1 1 GRLDSSEMDHSENEDYTMSSPLPGKK 26 2 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 GRLDS(0.534)S(0.534)EMDHS(0.903)ENEDY(0.022)T(0.005)MS(0.001)S(0.001)PLPGKK 48.097 0.029562 604600000 4224.9 5664.5 0 0 0 0 0 0 0 8158.5 TRUE FALSE FALSE 3928.756327 5215.62439 0 0 0 0 0 0 0 6115.558497 0.642419875 0.852845148 0 0 0 0 0 0 0 1 12.57826854 -10.67626143 6.886150432 1.004971705 0.15701883 0.411911852 0.2987261 0.02546372 0.001197125 0.323015769 0.078368479 2.11E-11 10.67626143 -0.847952875 GRLDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_HeLa_A485_30min_R1 1 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 GRLDSSEMDHS(1)ENEDYTMSSPLPGK 171.99 1.82E-14 281040000 121670 150970 149370 150340 190880 179630 202380 252040 182530 246930 TRUE FALSE FALSE 148735.0717 168624.6282 204628.1788 158552.6935 171875.317 189035.149 159139.8597 190226.7948 219162.0967 185374.8954 0.802347434 0.909641124 1.103861331 0.855308337 0.927176879 1.019745142 0.85847579 1.026173444 1.182264169 1 17.50008635 -7.510225945 10.2102461 1.095602033 0.933176437 0.357775256 0.090899826 0.317210142 252.5623771 0.053007247 0.023126198 3.09E-08 7.510225945 -0.162425596 GRLDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_HeLa_A486_30min_R1 2 GRLDSSEMDHSENEDYTMSSPLPGK 25 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 GRLDS(0.156)S(0.156)EMDHS(0.68)ENEDY(0.005)T(0.002)MSSPLPGK;GRLDS(0.034)S(0.194)EMDHS(0.674)ENEDY(0.054)T(0.043)MS(0.001)SPLPGK ; 94.006 0.0015389 1060560000 654650 729900 471400 279920 619330 806180 929670 873740 723210 1077560 TRUE FALSE FALSE 608762.4156 672060.0657 653938.7045 651667.9064 541647.8564 706721.7082 697056.733 674808.4756 785898.4251 807731.9623 0.753668846 0.832033517 0.809598648 0.806787322 0.670578709 0.874945825 0.862980253 0.835436144 0.972969329 1 19.6235171 -7.596929446 0.876319516 1.004512314 0.78688485 0.659345355 0.053257575 0.354432738 0.543377178 0.05069226 0.019393093 2.53E-08 7.596929446 -0.217627464 GRLDSSEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_HeLa_A485_30min_R1 3 GRLDSSEMDHSENEDYTMSSPLPGKK 26 2 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 GRLDSSEMDHS(1)ENEDYTMSSPLPGKK;GRLDSSEMDHS(1)ENEDYTMSSPLPGKK;GRLDSSEMDHS(1)ENEDYTMSSPLPGKK ;; 229.96 5.47E-39 1207140000 301625 351848 260321 347973 441780 442270 547870 708670 358448 532990 TRUE FALSE FALSE 368720.4407 392993.5629 356624.5708 366981.8839 397794.832 465426.5733 430813.0988 534867.5713 430385.2257 400125.402 0.921512203 0.98217599 0.891282006 0.917167173 0.994175401 1.163201764 1.076695198 1.336749851 1.07562585 1 18.6100927 -6.12995951 3.042615826 1.14939169 0.930092853 0.552587862 0.085652027 0.183579287 3.241913347 0.029034988 0.029249204 7.41E-07 6.12995951 -0.219298837 GRLDSSEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_HeLa_A486_30min_R1 2 GRLDSSEMDHSENEDYTMSSPLPGKK 26 2 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 GRLDSSEMDHS(1)ENEDYTMSSPLPGKK;GRLDSSEMDHS(1)ENEDYTMSSPLPGKK ; 260.68 1.75E-62 585150000 436220 408470 268068 132453 418620 406680 523520 494690 323620 497680 TRUE FALSE FALSE 405643.2306 376101.3496 371871.1087 308357.2778 366112.7761 356507.9564 392529.7588 382059.886 351671.6422 373057.6886 1.087347193 1.008158687 0.996819312 0.826567277 0.981383811 0.955637606 1.052195869 1.024130845 0.942673621 1 18.50903922 -9.280680485 14.40368743 1.000000233 0.984401061 0.003275645 0.067067323 0 0 0.067928704 0.016475131 5.24E-10 9.280680485 -0.015599172 GRLGFQVWLK ddPTM_HeLa_A485_30min_R1 2 GRLGFQVWLK 10 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 ; ; 140.75 0.00046534 74017000 109977 172202 100525 67658 136901 135183 190245 239790 74107 113370 FALSE FALSE TRUE 134441.0042 192339.5259 137713.3807 71353.98522 123270.6558 142260.9728 149597.6016 180981.1265 88979.59515 85108.94542 1.579634239 2.259921387 1.618083505 0.838384084 1.448386596 1.671516104 1.757718896 2.126464212 1.045478765 1 16.37702315 -4.987423606 24.27321285 1.466323055 1.924584321 0.196674511 0.397924585 277.391238 535370.6831 0.106309253 0.221049015 1.03E-05 4.987423606 0.458261267 GRLGFQVWLK ddPTM_HeLa_A486_30min_R1 2 GRLGFQVWLK 10 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 ; ; 91.867 0.013281 35660000 44755 37848 29808 25878 46019 31140 52315 48657 27200 61792 FALSE FALSE TRUE 41617.90562 34848.78664 41350.45589 60245.2918 40246.86791 27298.26341 39225.23367 37578.86327 29557.7179 46318.881 0.898508442 0.752366765 0.892734345 1.300663801 0.868908468 0.589354985 0.846851928 0.811307667 0.638135405 1 15.49931278 -6.00240756 24.97799208 0.765187374 0.959218315 0.211174751 0.166874436 150.3384865 1559761.347 0.053816799 0.060014879 9.94E-07 6.00240756 0.194030942 GRLGS(ph)PGAPQQEDAMDDKELIEYFK ddPTM_HeLa_A485_30min_R1 1 GRLGSPGAPQQEDAMDDKELIEYFK 25 2 H0YGG4 H0YGG4 EIF2B1 1 0 GRLGS(1)PGAPQQEDAMDDKELIEYFK 168.69 2.54E-14 129470000 82106 77305 54358 115960 120350 121850 179560 192230 77307 159950 TRUE FALSE FALSE 100370.1964 86345.14729 74467.28623 122294.6012 108367.5314 128229.8776 141195.5391 145085.2911 92821.8058 120077.4087 0.835879101 0.719079036 0.62016067 1.018464693 0.902480597 1.067893445 1.175870971 1.208264675 0.773016397 1 16.87360522 -5.276763474 23.00004365 1.033020147 0.724443596 0.530681344 0.127121773 206.7216815 310269.736 0.0368729 0.054992304 5.29E-06 5.276763474 -0.308576551 GRLGS(ph)PGAPQQEDAMDDKELIEYFK ddPTM_HeLa_A486_30min_R1 2 GRLGSPGAPQQEDAMDDKELIEYFK 25 2 H0YGG4 H0YGG4 EIF2B1 1 0 GRLGS(1)PGAPQQEDAMDDKELIEYFK;GRLGS(1)PGAPQQEDAMDDKELIEYFK ; 249.22 5.35E-50 264150000 187147 164935 95526 113525 195660 189612 279754 279240 126639 322280 TRUE FALSE FALSE 174028.9617 151864.9499 132516.2255 264291.9372 171118.4983 166219.5993 209756.5903 215663.1478 137616.1705 241578.9903 0.720381195 0.628634757 0.548542012 1.094018718 0.708333527 0.688054864 0.868273313 0.892723111 0.569652892 1 17.88213547 -14 0.077302703 1.680205093 0.528802471 0.167241345 0.159297538 507.6761071 2.786341551 62.31558084 6.273736819 1.00E-14 14 -1.151402622 GRLGS(ph)PHRRPLSVDK ddPTM_HeLa_A485_30min_R1 1 GRLGSPHRRPLSVDK 15 3 M0QXN6;M0QX46;Q6UUV9-3;Q6UUV9;Q6UUV9-2 M0QXN6 CRTC1 CREB-regulated transcription coactivator 1 1 0 GRLGS(0.993)PHRRPLS(0.007)VDK 62.002 0.023437 555860000 12681 38069 22805 4468.1 25451 50697 50697 66049 17664 11985 TRUE FALSE FALSE 15501.8447 42520.83839 31241.5185 4712.180989 22917.00908 53351.41653 39865.17179 49850.37919 21209.00278 8997.360068 1.72293257 4.725923835 3.472298348 0.523729289 2.547081467 5.929674496 4.43076319 5.540556209 2.357247306 1 13.13528604 -4.228914821 21.16613998 3.53205988 1.722906857 0.072454198 1.727162801 4214.150802 2742089.083 0.447183833 42.68474951 5.90E-05 4.228914821 -1.809153023 GRLGS(ph)VDSFER ddPTM_HeLa_A485_30min_R1 2 GRLGSVDSFER 11 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 GRLGS(1)VDSFER;GRLGS(1)VDSFER ; 191.01 3.52E-11 1582860000 158624 291300 282320 164558 271200 265370 289700 331310 211813 201066 TRUE FALSE FALSE 193909.3616 325365.001 386761.9163 173547.3869 244198.3758 279264.3629 227803.2284 250055.703 254321.9262 150943.9465 1.284644837 2.155535273 2.562288354 1.149747246 1.617808341 1.850119659 1.509190886 1.656612993 1.684876618 1 17.20365337 -11.28145137 0.188650662 4.17E-16 1.927403225 0.247283742 0.383722959 58.93002949 1.467439509 26.65410663 1.249920855 5.23E-12 11.28145137 1.927403225 GRLGS(ph)VDSFER ddPTM_HeLa_A486_30min_R1 2 GRLGSVDSFER 11 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 GRLGS(0.999)VDS(0.001)FER;GRLGS(1)VDSFER ; 113.65 0.00020569 192974000 182493 182642 196829 47380 225940 151502 169303 178707 144599 195531 TRUE FALSE FALSE 169701.1831 168168.7827 273046.4601 110303.0345 197600.4984 132811.2236 126941.5987 138019.3172 157132.9577 146568.7649 1.157826384 1.147371221 1.862923934 0.752568492 1.348176049 0.906135927 0.866089025 0.941669375 1.0720767 1 17.16121816 -5.291242593 24.99999444 0.98842573 1.365173973 0.382602573 0.235433814 736.4078049 617723.4427 0.065468481 0.097119914 5.11E-06 5.291242593 0.376748242 GRLPNNS(ph)SRPST(ph)PTINVLESK ddPTM_HeLa_A486_30min_R1 1 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 0 GRLPNNS(0.888)S(0.057)RPS(0.15)T(0.837)PT(0.069)INVLESK 132.53 7.62E-07 353730000 594060 634850 363930 217470 574560 584690 649230 671920 470360 738150 TRUE FALSE FALSE 552419.4617 584542.1739 504853.4424 506281.1503 502493.3272 512556.8925 486785.7871 518938.4839 511131.1835 553312.4354 0.998386131 1.056441418 0.912420199 0.915000491 0.908154769 0.926342622 0.879766577 0.937876055 0.923765943 1 19.07773482 -4.768305639 24.99999524 0.920611435 1.027413783 0.616248312 0.032016674 78.47919782 285745.723 0.007718485 0.016649814 1.70E-05 4.768305639 0.106802348 GRLPNNSS(ph)RPS(ph)TPTINVLESK ddPTM_HeLa_A485_30min_R1 2 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 0 GRLPNNS(0.439)S(0.56)RPS(0.56)T(0.44)PTINVLESK;GRLPNNS(0.438)S(0.562)RPS(0.863)T(0.136)PTINVLESK ; 183.49 2.36E-19 2028290000 823330 867100 749600 1041250 1014290 992650 1228400 1173090 1004220 1447510 TRUE FALSE FALSE 1006476.918 968499.8022 1026908.233 1098130.851 913303.7262 1044623.619 965942.3049 885387.8382 1205757.743 1086672.396 0.926200869 0.891252787 0.945002594 1.010544534 0.84045912 0.96130501 0.888899275 0.814769788 1.109587164 1 20.05148564 -7.772233761 24.99999996 1.054793601 0.912425504 0.489719763 0.059152232 199.6667974 462416.5929 0.053808766 0.014451557 1.69E-08 7.772233761 -0.142368097 GRLPNNSS(ph)RPS(ph)TPTINVLESK ddPTM_HeLa_A486_30min_R1 2 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 0 GRLPNNS(0.47)S(0.53)RPS(0.529)T(0.47)PT(0.002)INVLESK;GRLPNNS(0.455)S(0.544)RPS(0.542)T(0.454)PT(0.004)INVLESK ; 95.519 0.00048128 677280000 396060 421360 304580 154854 422180 402250 489300 485210 346800 508600 TRUE FALSE FALSE 368298.2393 387969.899 422521.5329 360507.9379 369226.2477 352624.4848 366871.9647 374738.2751 376860.9032 381243.2496 0.966045273 1.017643983 1.108272824 0.945611334 0.968479437 0.924933058 0.962304159 0.98293747 0.988505118 1 18.54035227 -5.317831756 24.99999068 0.964873561 1.029353759 0.364686435 0.038049736 293.8292772 130260.3126 0.010916382 0.01619162 4.81E-06 5.317831756 0.064480197 GRLPNNSS(ph)RPST(ph)PTINVLESK ddPTM_HeLa_A485_30min_R1 2 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 0 GRLPNNS(0.456)S(0.502)RPS(0.339)T(0.566)PT(0.134)INVLES(0.004)K;GRLPNNS(0.44)S(0.56)RPS(0.439)T(0.56)PT(0.001)INVLESK ; 165.85 7.44E-13 1582810000 698850 747180 712770 955500 911610 948720 1096370 995280 837800 1320850 TRUE FALSE FALSE 854306.7715 834556.2014 976453.2838 1007696.546 820846.9075 998393.5122 862121.593 751186.0195 1005938.775 991586.4034 0.861555552 0.841637399 0.984738476 1.016246836 0.827811782 1.006864867 0.869436682 0.757559822 1.014474151 1 19.91937896 -4.568376594 0.007567882 1.797779561 3.36E-05 0.058634801 0.088544819 49344.39577 64.38590927 7272.507079 8034.262574 2.70E-05 4.568376594 -1.797745929 GRLPNNSSRPS(ph)TPTINVLESK ddPTM_HeLa_A485_30min_R1 2 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 GRLPNNS(0.004)S(0.004)RPS(0.803)T(0.188)PT(0.001)INVLESK;GRLPNNS(0.164)S(0.06)RPS(0.618)T(0.154)PT(0.003)INVLESK ; 176.9 7.80E-15 1902170000 817854 757175 722418 730286 859507 771188 868580 748000 729914 1023140 TRUE FALSE FALSE 999782.8007 845720.0297 989670.4805 770179.675 773931.4652 811566.2112 683000.7874 564551.8272 876401.0446 768090.0275 1.301647938 1.101068884 1.288482398 1.002720576 1.007605147 1.056602979 0.889219705 0.735007365 1.14101344 1 19.55091589 -5.470001804 1.039722137 0.937456785 1.24384938 0.477475311 0.117157608 0.482125915 1.048322087 0.047116031 0.103456768 3.39E-06 5.470001804 0.306392595 GRLPNNSSRPS(ph)TPTINVLESK ddPTM_HeLa_A486_30min_R1 1 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 GRLPNNS(0.291)S(0.291)RPS(0.34)T(0.076)PT(0.002)INVLESK 45.957 0.036595 408270000 89330 83878 59792 35846 77936 75583 96832 91528 71066 117250 TRUE FALSE FALSE 83068.4283 77231.2018 82945.06369 83451.29956 68160.54016 66258.33793 72603.60942 70689.07244 77226.0581 87889.83683 0.945142593 0.878727332 0.943738965 0.949498856 0.775522434 0.753879405 0.826075142 0.80429177 0.878668807 1 16.42340873 -5.752114278 24.99140666 0.824977948 0.926699267 0.285120558 0.067005261 220.0151419 589640.5679 0.019198963 0.024439519 1.77E-06 5.752114278 0.101721319 GRLPNNSSRPST(ph)PTINVLESK ddPTM_HeLa_A485_30min_R1 1 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 GRLPNNS(0.005)S(0.005)RPS(0.108)T(0.883)PTINVLESK 174.99 3.86E-14 1377600000 802390 894720 693920 801300 968000 785020 852040 802180 737300 1029400 TRUE FALSE FALSE 980878.8873 999349.721 950629.8844 845072.99 871622.5211 826122.4333 669994.6935 605444.0972 885269.3471 772789.5247 1.269270423 1.29317193 1.230127808 1.093535773 1.127891222 1.069013498 0.866982111 0.783452774 1.145550397 1 19.55971601 -5.773484248 0.890160732 0.939024002 1.288696838 0.622026858 0.097167037 0.389633725 0.668006525 0.050434079 0.080997711 1.68E-06 5.773484248 0.349672835 GRLPNNSSRPST(ph)PTINVLESK ddPTM_HeLa_A486_30min_R1 2 GRLPNNSSRPSTPTINVLESK 21 2 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 GRLPNNSSRPS(0.112)T(0.834)PT(0.055)INVLESK;GRLPNNS(0.012)S(0.012)RPS(0.375)T(0.577)PT(0.023)INVLESK ; 210.31 6.48E-27 2225920000 1878180 1789280 1044420 538240 1540570 1574020 1737530 1588020 1232520 1986520 TRUE FALSE FALSE 1746529.281 1647490.936 1448847.395 1253049.921 1347337.345 1379833.416 1302781.616 1226462.512 1339355.826 1489082.462 1.172889565 1.106379921 0.97297996 0.84149129 0.904810432 0.926633314 0.874888832 0.823636396 0.899450407 1 20.50599222 -4.796780396 2.31341277 0.889214126 1.16446018 0.811928089 0.046634591 0.115212807 1.205256649 0.012575596 0.041075191 1.60E-05 4.796780396 0.275246054 GRLS(ph)PVPVPR ddPTM_HeLa_A485_30min_R1 9 GRLSPVPVPR 10 1 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 1 0 GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR ;;;;;;;; 102.33 0.00065013 2.11E+11 7342046 10775414 10613770 6956119 11169866 9378962 10732368 12218284 8782840 9336008 TRUE FALSE FALSE 8975258.803 12035504.93 14540245.2 7336114.167 10057754.92 9870029.948 8439309.901 9221730.691 10545475.43 7008713.022 1.280585861 1.717220393 2.0745956 1.046713447 1.435035917 1.408251403 1.204116915 1.315752359 1.504623658 1 22.74071812 -5.273419878 24.98531726 1.296109913 1.693442621 0.396829185 0.234600977 760.3934929 1585798.298 0.065441208 0.097925037 5.33E-06 5.273419878 0.397332707 GRLS(ph)PVPVPR ddPTM_HeLa_A486_30min_R1 9 GRLSPVPVPR 10 1 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 1 0 GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR;GRLS(1)PVPVPR ;;;;;;;; 107.53 0.00042089 1.91E+11 4733275 4814679 4687383 1325767.5 5866843 4050098 4497958 5037020 4249895 4426214 TRUE FALSE FALSE 4401496.865 4433146.301 6502463.23 3086453.741 5130968.845 3550438.087 3372521.334 3890200.503 4618279.32 3317861.205 1.326606688 1.336145796 1.959835819 0.930254025 1.546468803 1.070098436 1.016474507 1.172502484 1.3919447 1 21.6618221 -5.283648105 24.995331 1.174532231 1.520391224 0.342620691 0.240050348 938.3781405 1056117.599 0.066700587 0.099020257 5.20E-06 5.283648105 0.345858993 GRLSPVPVPR ddPTM_HeLa_A485_30min_R1 1 GRLSPVPVPR 10 1 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 0 0 86.898 0.0047967 230060000 20792 28755 29999 21844 28817 27607 27819 32912 26590 27113 FALSE FALSE TRUE 25417.10867 32117.64711 41096.87846 23037.28241 25947.8783 29052.45983 21875.24339 24840.2804 31926.3691 20354.22808 1.248738521 1.577934913 2.019083126 1.131818034 1.274815149 1.427342748 1.074727241 1.22039904 1.568537455 1 14.31304089 -5.299450505 24.99904907 1.253758445 1.611521008 0.349650557 0.232580057 615.5920018 404859.4614 0.065379472 0.09697548 5.02E-06 5.299450505 0.357762563 GRLSPVPVPR ddPTM_HeLa_A486_30min_R1 3 GRLSPVPVPR 10 1 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 0 0 ;; ;; 108.43 0.0036151 0 201749 215550 222994 65154 257577 175468 213023 221887 197197 220696 FALSE FALSE TRUE 187607.4369 198469.033 309343.2488 151681.8047 225269.2908 153820.5422 159722.3923 171368.1739 214290.1947 165432.2851 1.134043677 1.19969952 1.869908577 0.916881518 1.361700896 0.929809693 0.965485015 1.035881078 1.295334793 1 17.33588129 GRLT(ph)PS(ph)PDIIVLS(ph)DNEAS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 4 0 GRLT(1)PS(1)PDIIVLS(1)DNEAS(0.898)S(0.102)PR 162.38 8.49E-14 1331200000 585810 883250 895360 672250 996040 817290 1041300 1056300 841230 936030 TRUE FALSE FALSE 716121.4135 986538.4042 1226590.923 708973.3153 896870.7603 860082.0406 818817.7484 797240.7688 1010057.145 702694.9474 1.019107105 1.403935531 1.745552501 1.008934699 1.276330168 1.223976412 1.165253502 1.134547462 1.437404878 1 19.422539 -5.306892404 24.99994144 1.189143762 1.390974042 0.186282893 0.201601024 732.3775888 402818.6496 0.056363581 0.083601042 4.93E-06 5.306892404 0.20183028 GRLT(ph)PS(ph)PDIIVLS(ph)DNEASS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 4 0 GRLT(1)PS(1)PDIIVLS(0.989)DNEAS(0.267)S(0.744)PR 108.8 4.39E-05 861660000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GRLT(ph)PS(ph)PDIIVLS(ph)DNEASS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 4 0 GRLT(1)PS(1)PDIIVLS(1)DNEAS(0.21)S(0.79)PR 134.36 3.41E-07 407930000 243850 227450 205820 169900 282320 226430 415180 401780 170590 455940 TRUE FALSE FALSE 226757.3742 209426.0336 285519.0161 395535.7863 246908.7931 198495.3688 311297.5727 310303.4648 185376.8786 341769.6563 0.663480125 0.612769536 0.835413591 1.157316862 0.722442114 0.580786986 0.910840289 0.907931582 0.542402976 1 18.38266479 -11.48297287 2.262491352 3.721730455 0.780225102 0.127084346 0.178873647 11072198.87 692831.1118 156584195 0.048630466 3.29E-12 11.48297287 -2.941505352 GRLT(ph)PS(ph)PDIIVLS(ph)DNEASSPR ddPTM_HeLa_A486_30min_R1 4 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(1)PS(1)PDIIVLS(0.977)DNEAS(0.018)S(0.005)PR;GRLT(1)PS(1)PDIIVLS(0.996)DNEAS(0.003)S(0.001)PR;GRLT(1)PS(1)PDIIVLS(0.989)DNEAS(0.005)S(0.006)PR;GRLT(1)PS(1)PDIIVLS(0.994)DNEAS(0.005)S(0.001)PR ;;; 132.6 7.61E-07 1273340000 418598 507879 410469 273655 546584 471294 512931 543905 416685 607546 TRUE FALSE FALSE 389256.4418 467632.8184 569413.5895 637082.6698 478026.338 413150.538 384590.2386 420069.7049 452803.5913 455412.5271 0.854733716 1.026833454 1.250324828 1.398913363 1.049655663 0.907200644 0.844487614 0.922393829 0.994271269 1 18.79681445 -6.004057835 24.99422161 0.929377636 1.144883953 0.315794561 0.138100474 216.2264107 1331858.561 0.047606128 0.052772927 9.91E-07 6.004057835 0.215506317 GRLT(ph)PS(ph)PDIIVLSDNEAS(ph)SPR ddPTM_HeLa_A485_30min_R1 4 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(0.999)PS(0.729)PDIIVLS(0.327)DNEAS(0.559)S(0.386)PR;GRLT(1)PS(1)PDIIVLSDNEAS(0.574)S(0.426)PR;GRLT(1)PS(1)PDIIVLS(0.022)DNEAS(0.519)S(0.459)PR;GRLT(1)PS(1)PDIIVLS(0.005)DNEAS(0.879)S(0.117)PR ;;; 228.61 5.04E-36 331769000 198039 288455 283523 209673 333780 263501 299176 334590 272469 279724 TRUE FALSE FALSE 242092.0923 322187.303 388409.9561 221126.9051 300547.6912 277297.5049 235254.6036 252531.2779 327151.0291 209993.9547 1.152852674 1.534269419 1.849624464 1.053015575 1.431220683 1.320502322 1.120292267 1.202564513 1.557906891 1 17.67998827 -5.281138568 24.95996006 1.255461955 1.514450998 0.235512758 0.223023795 1173.154307 1486448.372 0.062312333 0.092567249 5.23E-06 5.281138568 0.258989043 GRLT(ph)PS(ph)PDIIVLSDNEAS(ph)SPR ddPTM_HeLa_A486_30min_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(1)PS(1)PDIIVLSDNEAS(0.535)S(0.465)PR;GRLT(1)PS(1)PDIIVLSDNEAS(0.555)S(0.445)PR;GRLT(1)PS(1)PDIIVLS(0.033)DNEAS(0.512)S(0.456)PR ;; 191.11 1.31E-19 571944000 328060 386341 340673 121880.1 427546 329805 345396 358805 310755 375651 TRUE FALSE FALSE 305064.6881 355725.9321 472590.7091 283743.0323 373919.194 289117.0123 258974.2676 277112.9342 337691.4936 281585.5445 1.083381921 1.263296142 1.678320206 1.007661927 1.327906213 1.026746642 0.91970015 0.984116335 1.199250104 1 18.10321375 -6.26987986 22.75238742 1.018328446 1.279498752 0.321792796 0.178342057 223.1199471 601444.6296 0.062841739 0.056450794 5.37E-07 6.26987986 0.261170306 GRLT(ph)PS(ph)PDIIVLSDNEASS(ph)PR ddPTM_HeLa_A485_30min_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(1)PS(1)PDIIVLSDNEAS(0.004)S(0.996)PR;GRLT(1)PS(1)PDIIVLSDNEAS(0.263)S(0.737)PR;GRLT(1)PS(0.991)PDIIVLS(0.009)DNEAS(0.23)S(0.77)PR ;; 259.93 5.36E-59 1781730000 454370 677000 753020 493616 781710 613204 748230 870140 657466 650661 TRUE FALSE FALSE 555443.0389 756169.2609 1031593.434 520580.9922 703880.2076 645310.4132 588364.548 656736.8007 789413.3956 488463.1872 1.137123643 1.548057828 2.111916437 1.065752765 1.441009734 1.321103473 1.204521781 1.344495999 1.616116457 1 18.89789031 -5.330511077 24.99999976 1.30375573 1.593974477 0.213152575 0.274993813 272.4574288 98612.9858 0.077179441 0.114475626 4.67E-06 5.330511077 0.290218747 GRLT(ph)PS(ph)PDIIVLSDNEASS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(1)PS(1)PDIIVLSDNEAS(0.266)S(0.734)PR 203.82 1.24E-26 164690000 145600 169260 152790 55708 186460 144280 156370 157900 141620 165460 TRUE FALSE FALSE 135394.1919 155847.2212 211954.3799 129691.0393 163072.4481 126480.2005 117244.5721 121949.6169 153895.7356 124027.739 1.091644441 1.256551336 1.708927225 1.045661562 1.314806263 1.019773492 0.945309275 0.983244699 1.240817069 1 16.92030329 -6.262958596 24.36195036 1.030999211 1.292439596 0.312115122 0.181989571 118.5866519 1901620.592 0.063320813 0.058839397 5.46E-07 6.262958596 0.261440385 GRLT(ph)PS(ph)PDIIVLSDNEASSPR ddPTM_HeLa_A485_30min_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(1)PS(1)PDIIVLSDNEASSPR;GRLT(1)PS(1)PDIIVLSDNEASSPR;GRLT(1)PS(1)PDIIVLSDNEASSPR ;; 233.44 4.98E-37 896090000 352377 519030 539210 368196 582200 503050 554170 598140 495550 521180 TRUE FALSE FALSE 430762.048 579726.0435 738686.2174 388309.6152 524234.1238 529388.9201 435767.0523 451445.2272 595002.3395 391259.4176 1.100962759 1.481692242 1.887970447 0.99246075 1.339863273 1.353038154 1.113754795 1.153825842 1.520736148 1 18.57776595 -5.287199339 24.95951195 1.224229984 1.489357097 0.228930916 0.234272869 1121.847391 1086985.372 0.065736931 0.097541834 5.16E-06 5.287199339 0.265127113 GRLT(ph)PS(ph)PDIIVLSDNEASSPR ddPTM_HeLa_A486_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(1)PS(1)PDIIVLSDNEASSPR;GRLT(1)PS(1)PDIIVLSDNEASSPR ; 213.37 2.31E-27 575310000 257503 303330 278540 84692 350680 262370 290540 300070 235938 267838 TRUE FALSE FALSE 239453.3694 279293.0261 386398.1476 197167.2561 306694.4444 230001.457 217843.819 231750.6115 256389.2958 200769.6215 1.192677297 1.391111982 1.924584729 0.982057219 1.527593877 1.145598897 1.08504373 1.154311144 1.277032322 1 17.61518147 -6.134931389 1.288134772 1.131603728 1.438105962 0.222229335 0.238992193 0.685762655 2.334417381 0.109169252 0.1098067 7.33E-07 6.134931389 0.306502234 GRLT(ph)PSPDIIVLS(ph)DNEAS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(0.996)PS(0.004)PDIIVLS(1)DNEAS(0.659)S(0.341)PR;GRLT(0.99)PS(0.01)PDIIVLS(0.992)DNEAS(0.616)S(0.392)PR ; 101.04 1.66E-06 818620000 337693 341510 292377 171774 395750 348153 400380 411620 265918 436080 TRUE FALSE FALSE 314022.4645 314447.5038 405593.2045 399898.553 346111.3448 305201.4226 300200.6892 317903.1116 288967.9863 326882.7296 0.960657863 0.961958144 1.24079117 1.223370086 1.0588242 0.933672522 0.918374273 0.972529543 0.884011176 1 18.31841363 -6.177020782 4.279174481 0.93836998 1.101409493 0.399668236 0.090762911 0.253963138 8.492542464 0.034075842 0.033851523 6.65E-07 6.177020782 0.163039513 GRLT(ph)PSPDIIVLS(ph)DNEASS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 0 GRLT(1)PSPDIIVLS(1)DNEAS(0.207)S(0.793)PR;GRLT(0.993)PS(0.007)PDIIVLS(1)DNEAS(0.241)S(0.759)PR ; 220.26 1.29E-35 513910000 226490 256840 231070 88397 297310 202392 245500 270750 209340 245160 TRUE FALSE FALSE 210614.2206 236487.063 320546.4923 205792.6833 260018.6075 177422.9328 184073.3034 209106.1354 227485.7598 183770.3403 1.146072975 1.286861975 1.744277623 1.119836221 1.414910628 0.965460109 1.001648596 1.137866617 1.237880712 1 17.48754442 -6.256123996 24.97807795 1.073005206 1.349269677 0.375231237 0.176505462 496.5466386 2333376.674 0.060068688 0.058390768 5.54E-07 6.256123996 0.276264471 GRLT(ph)PSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_A485_30min_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(1)PSPDIIVLS(1)DNEASSPR;GRLT(1)PSPDIIVLS(1)DNEASSPR;GRLT(0.994)PS(0.006)PDIIVLS(1)DNEASSPR ;; 264.19 3.45E-59 844960000 378813 586060 651970 436060 687440 547980 628630 696530 576420 566140 TRUE FALSE FALSE 463078.645 654594.619 893160.8337 459880.8536 618996.0599 576671.3855 494318.0651 525704.9254 692102.2068 425011.717 1.089566773 1.540180171 2.101496966 1.082042765 1.456421165 1.356836441 1.163069264 1.236918664 1.628430886 1 18.69714309 GRLT(ph)PSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_A486_30min_R1 4 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(1)PSPDIIVLS(1)DNEASSPR;GRLT(0.998)PS(0.002)PDIIVLS(1)DNEASSPR;GRLT(0.999)PS(0.001)PDIIVLS(1)DNEASSPR;GRLT(0.999)PS(0.001)PDIIVLS(1)DNEASSPR ;;; 203.83 1.30E-26 791160000 509254 569472 528012 184051 669210 495262 551897 566428 492576 551957 TRUE FALSE FALSE 473557.9244 524344.9647 732472.3871 428480.0294 585271.4417 434161.6099 413806.5332 437464.7094 535272.8843 413743.3746 1.144569203 1.267319302 1.77035436 1.035617863 1.414575985 1.04935 1.000152652 1.05733345 1.293731615 1 18.65837668 -6.26901462 24.62699927 1.078699315 1.331700093 0.281982153 0.196477346 648.6208672 2108651.177 0.068452339 0.061527699 5.38E-07 6.26901462 0.253000778 GRLT(ph)PSPDIIVLSDNEASS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(1)PSPDIIVLSDNEAS(0.016)S(0.984)PR 299.5 3.09E-87 502310000 471530 545800 488960 166620 615090 445550 472580 522470 430100 489700 TRUE FALSE FALSE 438478.182 502548.8202 678298.4068 387899.7805 537939.6767 390582.571 354335.4856 403514.9864 467381.4143 367075.9326 1.194516292 1.369059575 1.847842222 1.056728993 1.465472478 1.064037537 0.965292067 1.099268436 1.273255403 1 18.485719 -6.26806127 24.14705742 1.079382526 1.393027196 0.356735546 0.205601164 382.657149 1395373.822 0.071991832 0.065013799 5.39E-07 6.26806127 0.313644669 GRLT(ph)PSPDIIVLSDNEASSPR ddPTM_HeLa_A485_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 GRLT(0.994)PS(0.006)PDIIVLSDNEASSPR 115.63 5.92E-05 52015000 56530 81248 81108 53451 79988 77341 79745 87266 71699 68247 TRUE FALSE FALSE 69104.90347 90749.24684 111113.2244 56370.89278 72024.11387 81390.45517 62706.82929 65863.87667 86088.33164 51234.27889 1.34880211 1.771260351 2.168728179 1.100257367 1.405779791 1.588593749 1.223923331 1.285543158 1.680287758 1 15.64482176 -5.275255398 24.99225672 1.348208155 1.763763266 0.358676941 0.26640654 863.5526386 1562107.131 0.07441617 0.111010842 5.31E-06 5.275255398 0.41555511 GRLT(ph)PSPDIIVLSDNEASSPR ddPTM_HeLa_A486_30min_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 GRLT(0.945)PS(0.055)PDIIVLSDNEASSPR;GRLT(0.885)PS(0.115)PDIIVLSDNEASSPR;GRLT(0.967)PS(0.033)PDIIVLSDNEASSPR ;; 182.87 3.67E-22 0 429590 453386 426830 141645 492062 366385 400251 432353 363984 416878 TRUE FALSE FALSE 399477.9594 417458.0422 592110.0069 329756.7183 430342.9957 321184.1438 300103.9664 333915.6601 395534.4262 312489.0354 1.278374324 1.335912608 1.894818505 1.055258524 1.377145906 1.027825323 0.960366389 1.068567605 1.265754575 1 18.25344604 -5.321683245 24.99994749 1.112443974 1.486326301 0.466174434 0.193502637 219.161005 90946.69501 0.055165824 0.08182416 4.77E-06 5.321683245 0.373882327 GRLTPSPDIIVLSDNEASS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 GRLTPSPDIIVLSDNEAS(0.423)S(0.577)PR 96.312 0.00033512 106430000 33399 64271 58421 30868 60757 61297 70204 96673 41979 50592 TRUE FALSE FALSE 40828.49232 71786.93437 80033.359 32554.24068 54707.81975 64506.41614 55204.34189 72963.79517 50403.80025 37980.34548 1.07499002 1.890107461 2.107230937 0.857133875 1.44042449 1.698415729 1.453497623 1.921093509 1.327102205 1 15.21296541 -8.005809018 24.36071686 0.999999946 1.563240234 0.185271856 0.362381161 249.1429874 1044813.44 0.349177835 0.090157329 9.87E-09 8.005809018 0.563240288 GRNDS(ph)GEENVPLDLTR ddPTM_HeLa_A485_30min_R1 8 GRNDSGEENVPLDLTR 16 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(0.99)GEENVPLDLT(0.01)R;GRNDS(1)GEENVPLDLTR;GRNDS(0.967)GEENVPLDLT(0.033)R;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR ;;;;;;; 195.15 6.61E-19 6583160000 1467296 1935972 2078552 1571793 1975968 1677204 1861244 1760107 1845650 2142160 TRUE FALSE FALSE 1793690.933 2162367.085 2847494.881 1657656.072 1779233.688 1765019.808 1463574.014 1328437.999 2216055.026 1608158.936 1.115369192 1.344622746 1.770655137 1.030778759 1.106379257 1.097540653 0.910092891 0.826061386 1.37800747 1 20.61697857 -5.344630304 24.99967204 1.041109647 1.403665111 0.400394705 0.201850211 86.10703326 25874.75892 0.057026091 0.084583371 4.52E-06 5.344630304 0.362555464 GRNDS(ph)GEENVPLDLTR ddPTM_HeLa_A486_30min_R1 6 GRNDSGEENVPLDLTR 16 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(0.572)GEENVPLDLT(0.428)R;GRNDS(1)GEENVPLDLTR ;;;;; 226.23 2.55E-34 6022630000 2027976 2397939 2083175 652756 2276348 1947338 2079134 2124243 1933146 2214149 TRUE FALSE FALSE 1885825.355 2207917.58 2889836.149 1519648.956 1990827.208 1707095.237 1558912.682 1640599.241 2100712.652 1659711.679 1.136236721 1.330301888 1.741167569 0.915610209 1.199501837 1.028549271 0.939267165 0.988484483 1.265709387 1 20.66250121 -5.286281358 24.99807462 1.04863207 1.395342153 0.470317302 0.172304116 659.5468466 663689.7328 0.048661385 0.072211718 5.17E-06 5.286281358 0.346710083 GRNDS(ph)GEENVPLDLTREPSDNLR ddPTM_HeLa_A485_30min_R1 4 GRNDSGEENVPLDLTREPSDNLR 23 2 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 GRNDS(1)GEENVPLDLTREPSDNLR;GRNDS(1)GEENVPLDLTREPSDNLR;GRNDS(1)GEENVPLDLTREPSDNLR;GRNDS(1)GEENVPLDLTREPSDNLR ;;; 294.26 2.09E-89 2861890000 230113 457422 468638 171352 539914 455374 493365 689593 365406 286644 TRUE FALSE FALSE 281300.843 510913.5239 642006.6979 180712.5259 486158.2664 479216.6785 387953.5373 520469.2355 438739.6325 215188.9261 1.307227319 2.374255651 2.983456024 0.839785435 2.259216007 2.226957898 1.802850845 2.418661801 2.038857856 1 17.71524431 -9.925663947 6.04481539 0.999999681 2.048793829 0.224863976 0.5713624 2.52E-06 4.47E-07 0.537723499 0.130417064 1.19E-10 9.925663947 1.048794148 GRNDS(ph)GEENVPLDLTREPSDNLR ddPTM_HeLa_A486_30min_R1 3 GRNDSGEENVPLDLTREPSDNLR 23 2 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 GRNDS(1)GEENVPLDLTREPSDNLR;GRNDS(1)GEENVPLDLTREPSDNLR;GRNDS(1)GEENVPLDLTREPSDNLR ;; 250.18 8.28E-50 1406580000 269881 291154 341730 109608 507650 237381 347205 416580 261175 273206 TRUE FALSE FALSE 250963.7356 268081.8967 474057.0078 255172.9633 443975.8034 208095.3457 260330.6366 321733.8279 283813.8593 204793.4393 1.225448122 1.30903557 2.314805637 1.24600165 2.167920051 1.016123106 1.271186409 1.571016283 1.385854255 1 17.64380997 -6.291033332 24.99706619 1.285921477 1.647748914 0.220540048 0.376302212 1257.639019 1062283.378 0.131094497 0.11563128 5.12E-07 6.291033332 0.361827438 GRPEQLGS(ph)PLHSSYLNSFFQLQR ddPTM_HeLa_A485_30min_R1 2 GRPEQLGSPLHSSYLNSFFQLQR 23 1 Q8N2G6 Q8N2G6 ZCCHC24 Zinc finger CCHC domain-containing protein 24 1 0 GRPEQLGS(0.999)PLHS(0.001)SYLNSFFQLQR;GRPEQLGS(0.999)PLHS(0.001)SYLNSFFQLQR ; 247.52 2.39E-49 386670000 74542 197424 249958 55242 218959 117093 140360 164914 136333 71876 TRUE FALSE FALSE 91123.61073 220511.0194 342427.8658 58259.73058 197158.6731 123223.8084 110370.9394 124468.5829 163693.7826 53958.63598 1.68876787 4.086667786 6.346117903 1.079710959 3.653885417 2.283671672 2.045473118 2.306740722 3.033690152 1 15.71956626 -5.28643277 24.99965685 2.312470397 4.04513395 0.298759418 1.283849501 968.8081057 969048.8193 0.358494144 0.531975491 5.17E-06 5.28643277 1.732663553 GRPEQLGS(ph)PLHSSYLNSFFQLQR ddPTM_HeLa_A486_30min_R1 2 GRPEQLGSPLHSSYLNSFFQLQR 23 1 Q8N2G6 Q8N2G6 ZCCHC24 Zinc finger CCHC domain-containing protein 24 1 0 GRPEQLGS(1)PLHSSYLNSFFQLQR;GRPEQLGS(1)PLHSSYLNSFFQLQR ; 228.55 1.26E-38 327340000 120872 161474 247530 56906 242400 103433 124466 130390 169454 84553 TRUE FALSE FALSE 112399.497 148678.2122 343380.2451 132480.0439 211995.9317 90672.48809 93323.29033 100703.0434 184142.4092 63380.37845 1.773411578 2.345808211 5.417768929 2.090237501 3.344819594 1.430608184 1.472431888 1.588867814 2.905353576 1 15.95174865 -6.262200634 24.99197458 1.703317726 3.042775137 0.284846471 1.040025243 95.1499608 3123723.321 0.360172556 0.336441527 5.47E-07 6.262200634 1.339457411 GRPGSGT(ph)SGVDSLSNFIESVK ddPTM_HeLa_A486_30min_R1 1 GRPGSGTSGVDSLSNFIESVK 21 1 Q8IXT5;B9ZVT1;E5RHG1;E5RJ83;E5RJV8 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 GRPGS(0.241)GT(0.347)S(0.347)GVDS(0.064)LSNFIESVK 128.97 1.54E-06 147610000 83011 82740 47605 22517 66790 75547 77120 69191 59427 97153 TRUE FALSE FALSE 77192.35757 76183.38107 66038.93091 52420.71395 58412.57541 66226.77925 57823.76031 53437.71973 64578.18021 72825.25644 1.059966849 1.046112088 0.906813572 0.719815027 0.802092272 0.909393011 0.794006958 0.733780042 0.886755274 1 16.15215126 -4.876190542 3.472711368 0.82328973 1.056152295 0.53431394 0.079631591 0.157970971 3.663542607 0.020737141 0.049799848 1.33E-05 4.876190542 0.232862566 GRPPAEKLS(ph)PNPPK ddPTM_HeLa_A485_30min_R1 4 GRPPAEKLSPNPPK 14 2 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0;A0A0U1RRG6;A0A0U1RQX3;A0A0U1RRJ4;A0A0U1RR83;A0A0U1RRN2;A0A0U1RQW7;F6XE55;A0A0U1RR09;A0A0U1RQU0;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GRPPAEKLS(1)PNPPK;GRPPAEKLS(1)PNPPK;GRPPAEKLS(1)PNPPK;GRPPAEKLS(1)PNPPK ;;; 87.16 0.00071652 4545640000 2168630 1476300 1198280 3602050 2210720 1819720 2883720 2198340 1709470 4731130 TRUE FALSE FALSE 2651034.262 1648940.443 1641573.637 3798820.871 1990612.954 1914997.725 2267589.664 1659193.668 2052544.949 3551746.361 0.746403035 0.46426188 0.462187744 1.069564232 0.560460335 0.539170743 0.638443581 0.467148692 0.577897389 1 21.76009713 -10.41581283 5.987880871 1.000123532 0.611113238 0.30705253 0.173937413 0.000289951 2.83E-05 0.170237715 0.04127572 3.84E-11 10.41581283 -0.389010294 GRPPAEKLS(ph)PNPPK ddPTM_HeLa_A486_30min_R1 4 GRPPAEKLSPNPPK 14 2 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0;A0A0U1RRG6;A0A0U1RQX3;A0A0U1RRJ4;A0A0U1RR83;A0A0U1RRN2;A0A0U1RQW7;F6XE55;A0A0U1RR09;A0A0U1RQU0;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GRPPAEKLS(1)PNPPK;GRPPAEKLS(1)PNPPK;GRPPAEKLS(1)PNPPK;GRPPAEKLS(1)PNPPK ;;; 99.044 0.00034184 6920700000 10152200 9779900 4329360 4601120 7718400 11551200 13450600 12069100 7981000 15572600 TRUE FALSE FALSE 9440583.206 9004905.106 6005804.136 10711639.89 6750286.301 10126130.39 10085117.61 9321229.397 8672799.506 11673119.6 0.808745522 0.771422329 0.514498638 0.917633011 0.578276119 0.867474226 0.863960789 0.798520851 0.742971871 1 23.47668683 -6.332052366 24.9998675 0.842579204 0.720846197 0.234356842 0.122325767 265.4209319 93968.55382 0.041290112 0.03641446 4.66E-07 6.332052366 -0.121733007 GRPPAEKLS(ph)PNPPKLTK ddPTM_HeLa_A485_30min_R1 1 GRPPAEKLSPNPPKLTK 17 3 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0;A0A0U1RRG6;A0A0U1RQX3;A0A0U1RRJ4;A0A0U1RR83;A0A0U1RRN2;A0A0U1RQW7;F6XE55;A0A0U1RR09;A0A0U1RQU0;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GRPPAEKLS(1)PNPPKLTK 99.366 0.00045266 1547600000 1385200 1728200 744900 1098500 1648800 2550600 3445600 4941200 1209500 1832500 TRUE FALSE FALSE 1693332.961 1930297.957 1020469.508 1158508.273 1484639.683 2684145.472 2709419.412 3729362.952 1452235.556 1375691.475 1.230895875 1.40314743 0.741786605 0.842127973 1.079195234 1.951124595 1.969496404 2.710900679 1.055640442 1 20.39172552 -6.255542408 22.47106136 1.858867758 1.048806553 0.307025687 0.492559931 124.4926492 474392.4106 0.161062647 0.156542122 5.55E-07 6.255542408 -0.810061205 GRPPAEKLS(ph)PNPPKLTK ddPTM_HeLa_A486_30min_R1 2 GRPPAEKLSPNPPKLTK 17 3 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;B1ALG1;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RR26;B1ALG2;F6T8Q0;A0A0U1RRG6;A0A0U1RQX3;A0A0U1RRJ4;A0A0U1RR83;A0A0U1RRN2;A0A0U1RQW7;F6XE55;A0A0U1RR09;A0A0U1RQU0;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GRPPAEKLS(1)PNPPKLTK;GRPPAEKLS(1)PNPPKLTK ; 93.572 0.00072371 2590300000 4843800 2785400 1215690 1754670 3250800 2687400 4813200 4760900 1704510 6328200 TRUE FALSE FALSE 4504274.633 2564674.76 1686437.725 4084960.436 2843054.351 2355855.911 3608886.451 3676947 1852258.299 4743577.53 0.949552232 0.540662558 0.35552022 0.861156039 0.599348136 0.496641174 0.760794238 0.775142174 0.390477079 1 22.1775441 -10.22838836 4.448392575 1.000131801 0.634621944 0.251961178 0.187824374 0.000244552 4.24E-05 0.176866211 0.042880599 5.91E-11 10.22838836 -0.365509858 GRPPAEKLS(ph)PNPPNLTK ddPTM_HeLa_A485_30min_R1 2 GRPPAEKLSPNPPNLTK 17 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5;A0A2R8YF38 P51532-5 SMARCA4 Transcription activator BRG1 1 0 GRPPAEKLS(1)PNPPNLTK;GRPPAEKLS(1)PNPPNLTK ; 161.8 3.59E-12 4263010000 4223580 3203260 2347670 5557280 4345510 4075880 5942430 5687770 3471580 8258700 TRUE FALSE FALSE 5163100.8 3577853.392 3216170.828 5860860.135 3912855.766 4289286.774 4672781.285 4292835.489 4168294.263 6199958.08 0.832763824 0.57707703 0.518740738 0.945306413 0.631110036 0.691825125 0.753679497 0.692397502 0.672310072 1 22.56382703 -10.40836107 2.81417544 1.006512401 0.698699027 0.373266497 0.115905104 15248548.43 17383739.44 798186.2565 0.028977111 3.91E-11 10.40836107 -0.307813373 GRPPAEKLS(ph)PNPPNLTK ddPTM_HeLa_A486_30min_R1 2 GRPPAEKLSPNPPNLTK 17 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5;A0A2R8YF38 P51532-5 SMARCA4 Transcription activator BRG1 1 0 GRPPAEKLS(1)PNPPNLTK;GRPPAEKLS(1)PNPPNLTK ; 149.94 2.25E-08 10565600000 6846000 6342600 2959700 3012100 5238700 6636100 7999400 7894600 4882900 9080600 TRUE FALSE FALSE 6366130.753 5839989.277 4105775.104 7012321.023 4581613.397 5817405.453 5997865.511 6097171.918 5306153.704 6806758.655 0.935266119 0.8579692 0.603190933 1.030199744 0.673097671 0.854651347 0.88116324 0.895752623 0.779541919 1 22.69853653 -14 0.321846693 2.600079148 0.826290844 0.147712976 0.117704006 627.2446391 5.550053815 683.839615 0.100365633 1.00E-14 14 -1.773788304 GRPPAEKLS(ph)PNPPNLTKK ddPTM_HeLa_A485_30min_R1 1 GRPPAEKLSPNPPNLTKK 18 3 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5;A0A2R8YF38 P51532-5 SMARCA4 Transcription activator BRG1 1 0 GRPPAEKLS(1)PNPPNLTKK 72.771 0.0055482 678330000 283550 292410 150710 296020 372290 497490 661910 926210 302700 498440 TRUE FALSE FALSE 346624.7193 326604.8059 206463.9006 312190.823 335223.5004 523537.8071 520487.5212 699055.5453 363449.1135 374188.0811 0.926338215 0.872835941 0.551765037 0.834315252 0.895868996 1.399130099 1.390978354 1.868192977 0.971300615 1 18.51340408 -6.193418286 3.513575134 1.388033766 0.791182319 0.497883778 0.253224169 0.184612658 4.499327766 0.086310277 0.084489007 6.41E-07 6.193418286 -0.596851447 GRPPAEKLS(ph)PNPPNLTKK ddPTM_HeLa_A486_30min_R1 1 GRPPAEKLSPNPPNLTKK 18 3 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5;A0A2R8YF38 P51532-5 SMARCA4 Transcription activator BRG1 1 0 GRPPAEKLS(1)PNPPNLTKK 92.336 0.00064639 583890000 734310 437480 209460 327180 503440 493980 772340 762930 294840 968910 TRUE FALSE FALSE 682838.661 402812.4915 290568.5215 761691.5748 440293.8608 433037.77 579092.363 589227.4936 320396.9686 726288.6295 0.940175343 0.554617648 0.40007307 1.048745008 0.606224362 0.596233718 0.797330895 0.811285582 0.441142757 1 19.47018347 -10.07653701 4.346235594 1.000027289 0.688293984 0.180149239 0.199404123 48868068.19 28324566.27 12954.87447 0.046830641 8.38E-11 10.07653701 -0.311733306 GRPPAQALGPAAS(ph)PPPS(ph)PPLGPSLG ddPTM_HeLa_A485_30min_R1 4 GRPPAQALGPAASPPPSPPLGPSLG 25 1 H7C0J3;H7C3H7 H7C0J3 CHD3 2 0 GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG;GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG;GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG;GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG ;;; 109.44 0.00040573 508609000 411483 729999 699852 434215 785955 616456 739592 972579 687632 655622 TRUE FALSE FALSE 503015.9738 815366.0329 958756.3781 457935.066 707702.5605 648732.6829 581572.1273 734052.4753 825633.4351 492187.5012 1.022000706 1.656616698 1.947949462 0.930407751 1.437871865 1.318060051 1.181606859 1.4914082 1.677477451 1 18.9088485 -10.24781652 4.072752466 0.999674752 1.410415236 0.146183579 0.295016939 39221261.33 49344541.14 100119.8906 0.071451215 5.65E-11 10.24781652 0.410740484 GRPPAQALGPAAS(ph)PPPS(ph)PPLGPSLG ddPTM_HeLa_A486_30min_R1 3 GRPPAQALGPAASPPPSPPLGPSLG 25 1 H7C0J3;H7C3H7 H7C0J3 CHD3 2 0 GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG;GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG;GRPPAQALGPAAS(1)PPPS(1)PPLGPSLG ;; 107.45 0.00046429 478573000 459705 414138 433421 133646 496222 360989 434179 445751 371583 436103 TRUE FALSE FALSE 427482.0534 381320.1966 601253.2186 311134.6421 433981.2097 316453.8474 325542.8219 344263.228 403792.1136 326899.9702 1.30768459 1.166473635 1.83925749 0.951773235 1.327565767 0.968044895 0.995848429 1.053114895 1.235216122 1 18.31848972 -5.314106951 24.99997388 1.080802635 1.410675285 0.41611177 0.195585303 327.6691719 155535.6025 0.053820569 0.079828888 4.85E-06 5.314106951 0.329872651 GRPPKNPPS(ph)PRPSQLPVLDR ddPTM_HeLa_A486_30min_R1 1 GRPPKNPPSPRPSQLPVLDR 20 3 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 GRPPKNPPS(1)PRPSQLPVLDR 155.05 4.07E-09 356870000 193140 163180 113630 89417 150160 164670 223400 213540 135660 279820 TRUE FALSE FALSE 179601.8834 150249.0225 157630.5791 208167.2949 131325.5326 144354.6896 167502.9571 164921.6035 147419.118 209751.2507 0.856261323 0.716320032 0.751511987 0.992448408 0.626101309 0.688218493 0.798579062 0.786272325 0.702828315 1 17.67831989 -10.41591369 5.60738717 1.000123061 0.768090452 0.340753413 0.096501475 0.000147901 1.54E-05 0.09308343 0.022564132 3.84E-11 10.41591369 -0.232032609 GRPS(ph)KTPS(ph)PSQPK ddPTM_HeLa_A485_30min_R1 1 GRPSKTPSPSQPK 13 2 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 GRPS(0.677)KT(0.324)PS(0.796)PS(0.204)QPK 140.81 4.66E-06 321320000 611780 515550 315990 1175500 684630 680240 1183100 1228000 542340 1793200 TRUE FALSE FALSE 747868.3504 575839.0878 432887.8504 1239714.588 616465.8333 715856.3145 930321.02 926831.0746 651182.6634 1346188.241 0.555545151 0.42775525 0.321565616 0.920907307 0.457934347 0.53176539 0.691077957 0.688485493 0.483723333 1 20.36044873 -14 0.166215759 2.632371635 0.460966054 0.409991722 0.15854099 133.9265628 1.250853091 72.23774074 0.611193249 1.00E-14 14 -2.171405581 GRPSKT(ph)PS(ph)PSQPK ddPTM_HeLa_A486_30min_R1 2 GRPSKTPSPSQPK 13 2 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 GRPS(0.132)KT(0.87)PS(0.999)PSQPK;GRPS(0.137)KT(0.865)PS(0.718)PS(0.281)QPK ; 128.82 0.0001235 910590000 1519490 1206570 499230 1076140 950900 1474150 2180920 1833510 898190 2844100 TRUE FALSE FALSE 1412981.598 1110956.999 692545.2258 2505308.305 831629.2552 1292284.361 1635230.749 1416059.798 976045.8324 2131918.848 0.66277457 0.521106608 0.32484596 1.175142434 0.390084855 0.606160203 0.76702298 0.664218434 0.45782504 1 21.02372109 -10.62879747 2.547247217 1.042807553 0.622238959 0.203990402 0.22581551 19723844.65 16887656.54 5571694.15 0.05723344 2.35E-11 10.62879747 -0.420568594 GRPSKT(ph)PSPS(ph)QPK ddPTM_HeLa_A485_30min_R1 1 GRPSKTPSPSQPK 13 2 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 GRPS(0.024)KT(0.976)PS(0.483)PS(0.517)QPK 174.87 1.60E-12 345960000 416000 338570 200440 801960 471550 424270 754700 782610 321110 1128100 TRUE FALSE FALSE 508537.7648 378162.8163 274591.097 845769.0441 424600.8263 446484.1212 593452.1797 590673.6704 385553.8316 846885.4311 0.600480001 0.446533619 0.324236416 0.998681773 0.501367494 0.527207229 0.70074671 0.697465854 0.455260909 1 19.69180729 -14 0.245634225 3.401235298 0.549016375 0.324451776 0.177774016 217.1761408 2.161821762 261.7079011 0.26951378 1.00E-14 14 -2.852218923 GRPSS(ph)PRT(ph)PLYLQPDAYGSLDR ddPTM_HeLa_A485_30min_R1 1 GRPSSPRTPLYLQPDAYGSLDR 22 2 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 2 0 GRPS(0.475)S(0.554)PRT(0.969)PLY(0.003)LQPDAYGSLDR 123.36 1.53E-05 354440000 84154 107830 107930 80880 150200 110170 127540 141010 106540 107570 TRUE FALSE FALSE 102873.767 120439.7805 147857.7983 85298.2696 135245.5606 115938.3308 100290.0371 106427.0764 127921.6008 80754.77868 1.27390315 1.491426049 1.830947973 1.056262812 1.674768513 1.435683841 1.241908389 1.317904378 1.584074687 1 16.30126001 -12.14773495 0.300762304 1.69E-08 1.462278991 0.259889402 0.215872902 107.0740448 2.752789285 67.86449245 0.216567656 7.12E-13 12.14773495 1.462278975 GRPVS(ph)PQSR ddPTM_HeLa_A485_30min_R1 6 GRPVSPQSR 9 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GRPVS(1)PQSR;GRPVS(0.999)PQS(0.001)R;GRPVS(0.991)PQS(0.009)R;GRPVS(1)PQSR;GRPVS(0.999)PQS(0.001)R;GRPVS(0.998)PQS(0.002)R ;;;;; 90.005 0.0017299 3538750000 272668 402948 459775 207948 452870 390632 344073 461867 377412 287674 TRUE FALSE FALSE 333322.0559 450069.2634 629864.9053 219307.6727 407780.6727 411084.8875 270558.9927 348593.3941 453155.1266 215962.166 1.543428009 2.084019028 2.916552083 1.01549117 1.888204217 1.903504188 1.252807368 1.614141034 2.098307935 1 17.72041907 -5.272291976 24.97031925 1.582334392 2.171601685 0.280340032 0.467994005 970.7735689 2233613.777 0.130536618 0.195771027 5.34E-06 5.272291976 0.589267294 GRPVS(ph)PQSR ddPTM_HeLa_A486_30min_R1 6 GRPVSPQSR 9 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GRPVS(0.992)PQS(0.008)R;GRPVS(0.999)PQS(0.001)R;GRPVS(1)PQSR;GRPVS(1)PQSR;GRPVS(0.995)PQS(0.005)R;GRPVS(0.999)PQS(0.001)R ;;;;; 90.731 0.0016723 3336290000 278284 340835 424826 72974.2 441884 257355 252370 279982 313144 231748 TRUE FALSE FALSE 258777.7287 313825.9933 589330.0044 169887.6255 386458.7883 225605.1567 189224.3567 216236.2106 340287.5741 173716.7924 1.489652929 1.806538038 3.392475744 0.977957417 2.224648424 1.298695156 1.08926923 1.244762856 1.958864019 1 17.40637769 -6.030437809 1.438114562 1.322722729 2.072664816 0.192074736 0.634831262 0.678605348 2.871857596 0.264029654 0.288336405 9.32E-07 6.030437809 0.749942087 GRRPLLPFETEVGPCGVGEASLDKADSEGSNSGGT(ph)WPK ddPTM_HeLa_A486_30min_R1 1 GRRPLLPFETEVGPCGVGEASLDKADSEGSNSGGTWPK 38 3 Q8TDM6-4;Q8TDM6;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 GRRPLLPFETEVGPCGVGEASLDKADSEGS(0.002)NS(0.047)GGT(0.951)WPK 141.28 7.13E-09 241160000 92503 54420 39193 56107 85150 91814 137860 119150 58400 154890 TRUE FALSE FALSE 86019.01739 50107.56101 54369.57922 130619.9315 74469.69301 80486.92218 103365.9699 92022.14603 63462.15902 116104.5358 0.740875598 0.431572812 0.468281268 1.125020057 0.641402099 0.69322806 0.890283649 0.792580112 0.546595002 1 16.82506481 -8.603661897 0.049913338 1.665126239 4.66E-19 0.167192763 0.195508331 183.9930307 3.661457972 68.42851167 52.38784548 2.49E-09 8.603661897 -1.665126239 GRRPS(ph)GPDGAAR ddPTM_HeLa_A485_30min_R1 4 GRRPSGPDGAAR 12 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C528 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 GRRPS(1)GPDGAAR;GRRPS(1)GPDGAAR;GRRPS(1)GPDGAAR;GRRPS(1)GPDGAAR ;;; 60.549 0.020503 2826844000 206027 372349 321324 196293 365445 341189 369001 509849 327222 273279 TRUE FALSE FALSE 251856.9954 415891.9765 440195.119 207015.9895 329060.0126 359053.1285 290160.9219 384807.7333 392892.4539 205155.5746 1.227639053 2.027202903 2.145664917 1.009068313 1.603953552 1.750150485 1.414345783 1.875687434 1.915095189 1 17.64635883 -5.218868388 24.99969783 1.556208933 1.822872074 0.102837949 0.374147613 1227.285506 720718.358 0.100832913 0.174646043 6.04E-06 5.218868388 0.266663141 GRRPS(ph)GPDGAAR ddPTM_HeLa_A486_30min_R1 3 GRRPSGPDGAAR 12 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C528 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 GRRPS(1)GPDGAAR;GRRPS(1)GPDGAAR;GRRPS(1)GPDGAAR ;; 123.24 0.00065275 720460000 268065 276631 275329 92075 361042 234109 273129 300577 228208 294179 TRUE FALSE FALSE 249275.0278 254709.7521 381943.7624 214355.2532 315756.7458 205227.0118 204789.2353 232142.1786 247989.2532 220514.6636 1.130423817 1.155069454 1.732056073 0.972068023 1.431908158 0.930672856 0.928687607 1.052728988 1.124593028 1 17.75051507 -6.270669097 24.92887245 1.005716496 1.284653898 0.330717413 0.196997719 779.024148 2104088.496 0.067877992 0.060680158 5.36E-07 6.270669097 0.278937402 GRRS(ph)PILLPK ddPTM_HeLa_A485_30min_R1 1 GRRSPILLPK 10 2 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 GRRS(1)PILLPK 81.803 0.0046001 5408100000 762510 1166100 871280 782070 1401300 1397700 1653100 2095300 1049900 1085700 TRUE FALSE FALSE 932127.7189 1302465.251 1193602.729 824792.5038 1261781.652 1470881.411 1299901.68 1581424.39 1260605.3 815054.9708 1.143637855 1.598009089 1.464444451 1.011947087 1.548093929 1.804640746 1.594863815 1.940267155 1.546650649 1 19.63653784 -5.985118139 24.77180943 1.641507415 1.329788057 0.163865914 0.27646423 319.9933961 532646.1192 0.082069488 0.09302342 1.03E-06 5.985118139 -0.311719358 GRRS(ph)PILLPK ddPTM_HeLa_A486_30min_R1 2 GRRSPILLPK 10 2 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 GRRS(1)PILLPK;GRRS(1)PILLPK ; 84.365 0.0034471 7014500000 4614700 4280100 3712100 1972380 6040500 4724700 5835000 6097900 3573700 5331700 TRUE FALSE FALSE 4291233.36 3940929.288 5149524.533 4591800.319 5282844.165 4141814.551 4375021.284 4709541.286 3883471.193 3996607.616 1.073718957 0.986068603 1.288473883 1.148924478 1.321832081 1.036332547 1.094683718 1.178384705 0.971691886 1 21.93034451 -7.76640707 24.99343518 0.985845848 1.142052411 0.282338215 0.098969097 174.0360244 875559.2664 0.087748966 0.02543998 1.71E-08 7.76640707 0.156206563 GRRS(ph)S(ph)DT(ph)EEESR ddPTM_HeLa_A485_30min_R1 1 GRRSSDTEEESR 12 2 C9J8Q2;C9JVB3;F8WDM0;C9J367;C9J713;Q96IZ7-2;Q96IZ7 C9J8Q2 RSRC1 Serine/Arginine-related protein 53 3 0 GRRS(1)S(1)DT(1)EEESR 94.882 0.0019459 387090000 228380 369890 218700 339570 206980 295790 298040 434210 327850 375280 TRUE FALSE FALSE 279182.3431 413145.4179 299606.2309 358119.8493 186372.3444 311277.107 234361.3192 327719.3167 393646.4878 281729.6025 0.990958496 1.466460799 1.063453142 1.271147391 0.66152915 1.104878949 0.831866148 1.163240617 1.397249292 1 18.10395164 -2.825703487 10.52372014 1.094859115 1.214541782 0 0.233045424 0 0 0.053316564 0 0.001493814 2.825703487 0.119682667 GRRS(ph)S(ph)DT(ph)EEESR ddPTM_HeLa_A486_30min_R1 1 GRRSSDTEEESR 12 2 C9J8Q2;C9JVB3;F8WDM0;C9J367;C9J713;Q96IZ7-2;Q96IZ7 C9J8Q2 RSRC1 Serine/Arginine-related protein 53 3 0 GRRS(1)S(1)DT(0.991)EEES(0.009)R 96.489 0.00028801 0 86740 52907 92546 41460 63551 123160 71970 61939 103140 114330 TRUE FALSE FALSE 80659.97393 48714.45664 128382.2897 96520.97527 55579.84099 107965.7714 53962.34478 47836.84182 112080.2582 85701.02384 0.94117865 0.568423275 1.498025157 1.126252301 0.64853182 1.259795584 0.629658111 0.558182851 1.307805359 1 16.38702482 -6.77348208 24.99851735 0.837093606 0.998538808 0.034915036 0.318398467 792.1241162 1644293.813 0.133204597 0.090575036 1.68E-07 6.77348208 0.161445202 GRRS(ph)SDT(ph)EEESR ddPTM_HeLa_A485_30min_R1 2 GRRSSDTEEESR 12 2 C9J8Q2;C9JVB3;F8WDM0;C9J367;C9J713;Q96IZ7-2;Q96IZ7 C9J8Q2 RSRC1 Serine/Arginine-related protein 53 2 0 GRRS(0.961)S(0.124)DT(0.904)EEES(0.011)R;GRRS(0.857)S(0.151)DT(0.992)EEESR ; 140.26 2.70E-06 1307500000 790760 1375100 889890 1065570 912620 1188850 1093820 1672470 1374570 1348990 TRUE FALSE FALSE 966661.8339 1535905.983 1219097.342 1123779.391 821756.3484 1251096.348 860116.4213 1262294.11 1650433.591 1012711.619 0.954528234 1.516627196 1.203795157 1.109673642 0.811441612 1.235392508 0.849320186 1.246449716 1.629717245 1 19.94979198 -10.73358691 10.63757921 0.999756735 1.165986368 0.040690104 0.249916287 0.001455554 3.65E-05 0.244279369 0.059161845 1.85E-11 10.73358691 0.166229633 GRRT(ph)PPVQPPPTREDR ddPTM_HeLa_A485_30min_R1 6 GRRTPPVQPPPTREDR 16 3 Q9Y6R9 Q9Y6R9 CCDC61 Coiled-coil domain-containing protein 61 1 0 GRRT(1)PPVQPPPTREDR;GRRT(1)PPVQPPPTREDR;GRRT(1)PPVQPPPTREDR;GRRT(1)PPVQPPPTREDR;GRRT(1)PPVQPPPTREDR;GRRT(1)PPVQPPPTREDR ;;;;; 127.5 2.48E-05 1891400000 518326.2 981936 890200 293240.2 1597239 1249437 1403438 2301216 984811 537864 TRUE FALSE FALSE 633626.075 1096764.873 1219522.024 309259.1696 1438212.277 1314855.589 1103582.006 1736839.168 1182453.534 403784.4035 1.569218795 2.716214059 3.020230633 0.765901721 3.561832167 3.2563308 2.73309716 4.301402315 2.928427954 1 18.62322566 GRS(ph)ECDS(ph)S(ph)PEPK ddPTM_HeLa_A485_30min_R1 1 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GRS(1)ECDS(1)S(1)PEPK 144.29 1.99E-06 956690000 1036900 762180 697900 2046900 1384600 859590 1595100 1286400 882190 2421100 TRUE FALSE FALSE 1267554.828 851310.3209 956082.252 2158716.964 1246744.362 904596.8032 1254293.854 970908.383 1059237.441 1817564.327 0.697392004 0.468379748 0.526023887 1.187697696 0.685942359 0.49769727 0.69009599 0.534181029 0.582778516 1 20.79357499 GRS(ph)ECDS(ph)S(ph)PEPK ddPTM_HeLa_A486_30min_R1 3 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 GRS(1)ECDS(1)S(1)PEPK;GRS(1)ECDS(1)S(1)PEPK;GRS(1)ECDS(1)S(1)PEPK ;; 165.89 2.15E-09 2169940000 2898430 4299420 2185490 2958680 3926450 4962010 6389450 5744350 3053350 6149310 TRUE FALSE FALSE 2695265.025 3958718.301 3031770.257 6887956.563 3433958.028 4349847.656 4790742.029 4436486.903 3318016.836 4609482.751 0.584721794 0.858820504 0.657724613 1.494301408 0.744976869 0.943673703 1.039323128 0.962469575 0.719824114 1 22.13617344 GRS(ph)FAGNLNTYK ddPTM_HeLa_A485_30min_R1 1 GRSFAGNLNTYK 12 1 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 GRS(1)FAGNLNTYK 79.514 0.00316 245060000 108960 108520 99149 142390 162450 116850 162880 149750 125520 185390 TRUE FALSE FALSE 133197.7761 121210.47 135828.341 150168.4051 146275.9076 122968.0853 128079.3574 113023.5777 150710.7127 139175.6849 0.95704775 0.870917001 0.975948789 1.078984489 1.051016259 0.883545753 0.920271077 0.812092844 1.082881057 1 17.08654766 -8.777242541 14.54368076 0.999986708 0.95561443 0.018082693 0.086688616 0 0 0.087067598 0.021116994 1.67E-09 8.777242541 -0.044372278 GRS(ph)FAGNLNTYK ddPTM_HeLa_A486_30min_R1 1 GRSFAGNLNTYK 12 1 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 GRS(1)FAGNLNTYK 122.46 3.01E-05 391510000 225750 298190 243910 108380 367370 330370 373370 337150 248720 285330 TRUE FALSE FALSE 209926.0908 274560.3384 338358.4841 252314.1172 321291.029 289612.3084 279948.8769 260388.3049 270279.2499 213881.5108 0.981506489 1.283703006 1.581990341 1.179691112 1.502191694 1.35407828 1.308897042 1.217441863 1.263686837 1 17.70645225 -8.366298753 0.931050482 1.000857344 1.323905727 0.24972103 0.156642195 1.709104217 2.60850817 0.152578905 0.050359929 4.30E-09 8.366298753 0.323048383 GRS(ph)FAGNLNTYKR ddPTM_HeLa_A485_30min_R1 1 GRSFAGNLNTYKR 13 2 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 GRS(1)FAGNLNTYKR 100.97 0.00032598 577620000 156530 236830 190400 100500 307270 274370 380070 515370 173280 155180 TRUE FALSE FALSE 191349.5585 264525.2084 260836.8832 105990.0605 276677.1199 288735.5889 298864.9396 388974.6994 208055.7066 116496.4819 1.642535083 2.270671218 2.239010818 0.909813402 2.374982621 2.478491919 2.565441761 3.338939453 1.785939826 1 16.82992686 -5.948261038 24.99999084 2.403579812 1.811284946 0.090020866 0.670323567 192.8990921 93206.73474 0.201907473 0.228941524 1.13E-06 5.948261038 -0.592294866 GRS(ph)FAGNLNTYKR ddPTM_HeLa_A486_30min_R1 2 GRSFAGNLNTYKR 13 2 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 GRS(0.864)FAGNLNT(0.136)YKR;GRS(1)FAGNLNTYKR ; 154.39 1.56E-08 939930000 421650 411450 468920 213882 741420 433480 659680 724450 299120 488420 TRUE FALSE FALSE 392094.5124 378845.2035 650498.3821 497928.105 648424.1901 380001.6449 494621.0866 559508.5496 325047.9624 366116.4529 1.070955728 1.034766945 1.776752661 1.360026574 1.771087273 1.037925616 1.350993878 1.528225637 0.887826701 1 18.48194308 -7.769849021 24.99831485 0.943913071 1.370791867 0.298614803 0.258889903 256.7147841 763075.0106 0.237920477 0.065462286 1.70E-08 7.769849021 0.426878796 GRS(ph)IDQDYER ddPTM_HeLa_A485_30min_R1 4 GRSIDQDYER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER ;;; 165.78 2.07E-07 8966180000 1332190 1800670 2117360 1590310 2766840 2060110 2334280 2931930 2152800 2199340 TRUE FALSE FALSE 1628531.069 2011242.693 2900659.575 1677184.608 2491363.695 2167974.174 1835542.009 2212869.57 2584847.213 1651085.014 0.986339925 1.21813394 1.756820243 1.015807541 1.508925145 1.313060294 1.111718654 1.340251745 1.565544591 1 20.65498298 -8.769247016 14.55557825 1.000010542 1.315133053 0.139279051 0.233339037 0 0 0.219418258 0.053216744 1.70E-09 8.769247016 0.315122511 GRS(ph)IDQDYER ddPTM_HeLa_A486_30min_R1 4 GRSIDQDYER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER ;;; 208.23 2.20E-14 10098720000 2030959 2438190 2750200 931478 3610930 2278245 3030113 3178280 2243834 2401630 TRUE FALSE FALSE 1888599.262 2244978.945 3815151.093 2168527.858 3158013.489 1997178.295 2271946.678 2454655.025 2438331.338 1800246.216 1.049078312 1.247039946 2.119238501 1.20457293 1.754211985 1.109391747 1.262019971 1.363510726 1.354443251 1 20.7797628 -6.284160873 24.92122279 1.243351749 1.482959855 0.151544004 0.300687937 1691.527133 1855281.925 0.106384045 0.09388839 5.20E-07 6.284160873 0.239608105 GRS(ph)PPERPVPGTPK ddPTM_HeLa_A485_30min_R1 2 GRSPPERPVPGTPK 14 2 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 GRS(1)PPERPVPGTPK;GRS(1)PPERPVPGTPK ; 141.13 2.84E-07 2032520000 1053180 971410 959200 1200070 1278490 1051910 1260870 1131830 1085170 1634660 TRUE FALSE FALSE 1287456.258 1085007.949 1314047.996 1265626.785 1151199.047 1106986.381 991474.8241 854246.9179 1302953.665 1227169.346 1.049126807 0.88415503 1.070795975 1.031338331 0.93809306 0.90206489 0.807936433 0.696111682 1.061755388 1 20.22690292 -6.117908135 2.519309067 0.86739482 1.003304238 0.189157628 0.105433893 0.415545198 5.157878077 0.037642168 0.038151538 7.62E-07 6.117908135 0.135909419 GRS(ph)PPERPVPGTPK ddPTM_HeLa_A486_30min_R1 3 GRSPPERPVPGTPK 14 2 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 GRS(1)PPERPVPGTPK;GRS(1)PPERPVPGTPK;GRS(1)PPERPVPGTPK ;; 133.93 6.04E-06 1398690000 862980 976220 659246 340158 891560 911050 1006220 1030590 793050 991810 TRUE FALSE FALSE 802489.5584 898860.7719 914523.7064 791905.0146 779732.2313 798653.9139 754453.1133 795947.1546 861792.2125 743454.3204 1.079406678 1.209032952 1.230100736 1.065169699 1.048796422 1.074247458 1.014794174 1.07060667 1.159173051 1 19.50388458 -5.281790924 23.03490098 1.062783603 1.176465389 0.468710257 0.05411787 241.8280828 273712.5425 0.015212266 0.022607103 5.23E-06 5.281790924 0.113681786 GRS(ph)PPERPVPGTPKEPSLGEQSR ddPTM_HeLa_A485_30min_R1 1 GRSPPERPVPGTPKEPSLGEQSR 23 3 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 GRS(1)PPERPVPGTPKEPSLGEQSR 125.61 2.11E-05 661620000 59464 110770 84891 54546 125390 137190 170650 266480 84902 76461 TRUE FALSE FALSE 72691.56165 123723.5879 116295.7135 57525.70986 112905.7313 144373.0563 134189.2334 201125.3622 101941.0526 57400.67986 1.266388514 2.155437675 2.02603373 1.002178197 1.966975506 2.515180249 2.337763834 3.503884669 1.775955492 1 15.8087802 -6.004768452 24.4720512 2.373453254 1.656296234 0.138121969 0.67144317 255.923845 1313433.338 0.204658358 0.225966554 9.89E-07 6.004768452 -0.71715702 GRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_A485_30min_R1 15 GRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 32 1 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.5)PQPPAEEDEDDFDDT(0.5)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ;;;;;;;;;;;;;; 396.39 5.52E-194 21088768000 579978.3 542389.6 561216 779491.7 807153.6 684006 918624.4 884681.4 643157.9 1089329.6 TRUE FALSE FALSE 708992.4719 605817.3456 768833.1525 822073.3578 726790.5535 719819.4965 722352.7925 667711.8995 772233.7911 817779.7783 0.866972369 0.740807442 0.940146936 1.005250288 0.888736274 0.880211905 0.883309678 0.816493532 0.944305315 1 19.64135286 GRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_A486_30min_R1 14 GRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 32 1 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.999)PQPPAEEDEDDFDDT(0.001)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ;;;;;;;;;;;;; 343.21 1.02E-128 24648900000 357723.7 469342.6 381278.9 214982.73 506620.5 499831.7 552615.9 556783.6 456776.5 520344.2 TRUE FALSE FALSE 332649.1159 432150.1831 528920.3011 500490.6601 443075.4328 438167.5468 414345.5568 430016.1288 496370.2548 390046.6254 0.852844491 1.107944935 1.356043782 1.28315598 1.135955047 1.123372228 1.062297504 1.102473655 1.272592102 1 18.57328707 -5.991001293 24.91138406 1.117016919 1.167691688 0.00954528 0.13879829 986.7116957 2731524.096 0.04576707 0.051833436 1.02E-06 5.991001293 0.050674768 GRS(ph)PS(ph)PIGVGSEMCR ddPTM_HeLa_A485_30min_R1 4 GRSPSPIGVGSEMCR 15 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 2 0 GRS(1)PS(1)PIGVGSEMCR;GRS(1)PS(1)PIGVGSEMCR;GRS(1)PS(1)PIGVGSEMCR;GRS(1)PS(1)PIGVGSEMCR ;;; 123.19 3.38E-05 1686310000 378658 451095 547700 454677 638000 411309 526920 545600 488940 604450 TRUE FALSE FALSE 462889.1657 503846.6362 750317.0217 479514.8532 574478.4798 432844.5032 414339.2375 411790.7445 587065.7732 453771.7391 1.02009254 1.110352613 1.653512013 1.056731418 1.266007621 0.95388158 0.913100579 0.907484334 1.293746883 1 18.79160724 -6.259644268 24.84804711 1.001576562 1.230038042 0.222315319 0.193231227 225.350876 3119334.617 0.066350493 0.063125043 5.50E-07 6.259644268 0.22846148 GRS(ph)PS(ph)PIGVGSEMCR ddPTM_HeLa_A486_30min_R1 4 GRSPSPIGVGSEMCR 15 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 2 0 GRS(1)PS(1)PIGVGSEMCR;GRS(1)PS(1)PIGVGSEMCR;GRS(1)PS(1)PIGVGSEMCR;GRS(1)PS(1)PIGVGSEMCR ;;; 100.59 0.00061781 2342850000 436252 620390 574870 213566 694820 487770 595050 613020 448596 502780 TRUE FALSE FALSE 405672.9876 571228.037 797475.0596 497192.441 607669.1967 427593.8967 446162.1962 473448.7281 487480.6625 376880.6155 1.076396532 1.5156737 2.11598853 1.319230602 1.612365221 1.134560599 1.183828984 1.25622998 1.293461755 1 18.52374807 -6.262248909 24.96560332 1.190268924 1.548325372 0.320861001 0.256311673 92.94633336 2866392.286 0.08970653 0.083791427 5.47E-07 6.262248909 0.358056447 GRS(ph)PSQYHDFAEK ddPTM_HeLa_A485_30min_R1 2 GRSPSQYHDFAEK 13 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 GRS(0.983)PS(0.017)QYHDFAEK;GRS(0.997)PS(0.002)QY(0.001)HDFAEK ; 185.91 1.49E-17 1217080000 592280 754770 676400 529760 875900 842290 962320 1043710 730540 833010 TRUE FALSE FALSE 724030.6427 843033.7859 926628.5074 558699.4474 788692.3205 886391.002 756712.4706 787738.486 877152.6771 625355.9374 1.157789667 1.348086322 1.481761749 0.893410319 1.261189466 1.417418384 1.210050829 1.259664199 1.402645477 1 19.25431804 -10.15675965 4.802113014 0.999982563 1.269636191 0.209169281 0.157625974 4.06E-05 7.12E-06 0.152461412 0.036974026 6.97E-11 10.15675965 0.269653628 GRS(ph)PSQYHDFAEK ddPTM_HeLa_A486_30min_R1 4 GRSPSQYHDFAEK 13 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 GRS(0.998)PS(0.002)QYHDFAEK;GRS(0.998)PS(0.002)QYHDFAEK;GRS(0.997)PS(0.002)QY(0.001)HDFAEK;GRS(0.5)PS(0.5)QYHDFAEK ;;; 151.39 3.18E-08 1442760000 1818200 1751110 1332780 191890 1908170 1473410 1721760 1690480 1464540 1420320 TRUE FALSE FALSE 1690753.569 1612345.666 1848868.109 446729.6176 1668829.526 1291635.655 1290957.437 1305594.607 1591487.506 1064662.627 1.588065107 1.514419333 1.73657651 0.419597351 1.567472627 1.213187748 1.212550722 1.226298898 1.494828001 1 20.02196491 GRS(ph)RT(ph)PPTSR ddPTM_HeLa_A485_30min_R1 2 GRSRTPPTSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GRS(0.994)RT(0.989)PPT(0.014)S(0.003)R;GRS(0.999)RT(0.993)PPT(0.004)S(0.004)R ; 57.034 0.029342 26679200000 2225920 2932900 3885800 2912940 4983800 3337800 4451600 5379000 3451200 3481400 TRUE FALSE FALSE 2721068.225 3275877.142 5323319.122 3072066.536 4487595.373 3512562.047 3500479.294 4059791.816 4143824.184 2613551.05 1.041138349 1.253419994 2.036814671 1.175437739 1.717049059 1.343980653 1.339357535 1.553362356 1.58551492 1 21.31757991 -10.20304507 8.851947993 0.99999996 1.457577877 0.194696992 0.273855595 2.12E-07 1.91E-08 0.258431224 0.062678773 6.27E-11 10.20304507 0.457577918 GRS(ph)RT(ph)PPTSR ddPTM_HeLa_A486_30min_R1 1 GRSRTPPTSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GRS(1)RT(0.997)PPT(0.002)S(0.002)R 63.212 0.019513 18455000000 1224500 1426400 1834500 620640 2815000 1664000 2000000 2153400 1424200 1403000 TRUE FALSE FALSE 1138668.873 1313366.869 2544867.53 1444881.285 2461916.451 1458712.598 1499578.846 1663117.828 1547650.803 1051679.668 1.082714545 1.24882786 2.419812427 1.373879642 2.340937575 1.387031282 1.425889358 1.581392014 1.471599052 1 20.00426391 -8.435190784 0.70875515 0.994486317 1.656110991 0.162891857 0.416372297 2.727339388 2.448017719 0.458630254 0.157484918 3.67E-09 8.435190784 0.661624674 GRS(ph)SDAHSSWYNGR ddPTM_HeLa_A485_30min_R1 1 GRSSDAHSSWYNGR 14 1 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 GRS(0.626)S(0.374)DAHSSWYNGR 93.115 0.00057467 386070000 66233 127210 123920 49065 161990 98146 112310 134040 110240 71027 TRUE FALSE FALSE 80966.30235 142086.1029 169763.1647 51745.29671 145861.7068 103284.7728 88314.05101 101166.4798 132364.1568 53321.27606 1.518461454 2.664716853 3.183779108 0.970443705 2.735525434 1.937027401 1.656262894 1.897300427 2.482389144 1 15.70242369 -10.83372249 0.290750966 2.99E-20 2.232136761 0.209725337 0.63118409 45.80374608 2.188711929 33.84946989 0.714407284 1.47E-11 10.83372249 2.232136761 GRS(ph)SDAHSSWYNGR ddPTM_HeLa_A486_30min_R1 1 GRSSDAHSSWYNGR 14 1 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 GRS(0.718)S(0.282)DAHSSWYNGR 104.3 9.30E-05 0 64602 78846 101040 13147 130280 50693 45632 84632 74520 36141 TRUE FALSE FALSE 60073.73341 72597.95581 140165.3939 30606.88041 113939.0676 44439.01307 34214.39095 65363.1411 80979.4536 27091.05836 2.217474585 2.67977555 5.173861873 1.129777951 4.205781334 1.640357216 1.262940358 2.412720102 2.989157992 1 14.72552914 -6.295457282 24.90044503 1.911949063 3.066857603 0.220673862 1.144462912 1007.566029 737515.6399 0.394157135 0.347632091 5.06E-07 6.295457282 1.15490854 GRS(ph)T(ph)DEYS(ph)EADEEEEEEEGKPSR ddPTM_HeLa_A486_30min_R1 1 GRSTDEYSEADEEEEEEEGKPSR 23 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 3 0 GRS(0.999)T(0.997)DEY(0.02)S(0.984)EADEEEEEEEGKPSR 103.07 0.00054213 760290000 680080 699260 292540 385310 673340 817150 970520 948850 565950 1129300 TRUE FALSE FALSE 632409.9039 643848.0909 405819.3225 897021.1525 588883.4186 716338.3412 727685.6309 732817.5682 615007.0017 846515.9295 0.747073837 0.760585913 0.479399511 1.05966246 0.695655448 0.846219564 0.859624262 0.865686684 0.726515568 1 19.69117769 -12.04066508 0.033100361 2.030406824 4.92E-06 0.210962435 0.137810321 1299.68755 4.629324207 199.726077 99.17034561 9.11E-13 12.04066508 -2.0304019 GRS(ph)YDSSMESR ddPTM_HeLa_A486_30min_R1 2 GRSYDSSMESR 11 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 GRS(0.571)YDS(0.313)S(0.116)MESR;GRS(0.999)YDSSMESR ; 93.51 0.00032101 0 456600 524780 595610 141125 748780 495930 480720 537480 471730 475420 TRUE FALSE FALSE 424594.6979 483194.5216 826246.143 328546.1321 654861.0303 434747.1988 360438.7715 415107.5371 512619.9362 356371.7375 1.191437629 1.355872171 2.318495144 0.921919719 1.837578465 1.219926142 1.011412336 1.164816099 1.438441611 1 18.4430234 -6.491087529 22.27705032 1.160011764 1.526485293 0.192841262 0.368260193 296.7231983 207922.8158 0.126865338 0.111709785 3.23E-07 6.491087529 0.366473529 GRSECDS(ph)S(ph)PEPK ddPTM_HeLa_A485_30min_R1 2 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GRS(0.003)ECDS(0.997)S(1)PEPK;GRS(0.026)ECDS(0.976)S(0.998)PEPK ; 149.32 5.77E-07 1521440000 1823550 1702770 1731560 3308400 3301400 2103100 3323000 3338300 2113300 4674000 TRUE FALSE FALSE 2229192.406 1901894.139 2372136.1 3489129.515 2972701.024 2213215.064 2613013.904 2519576.691 2537419.926 3508857.819 0.635304285 0.542026562 0.67604224 0.994377571 0.847199054 0.630750854 0.744690734 0.71806178 0.723146977 1 21.74257006 -14 0.203992379 2.22029408 0.686082225 0.332798088 0.118234317 198.5871492 1.971600948 99.53436711 0.306041456 1.00E-14 14 -1.534211855 GRSECDS(ph)S(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GRS(0.028)ECDS(0.974)S(0.998)PEPK;GRS(0.004)ECDS(0.997)S(1)PEPK ; 167.21 8.23E-10 1841960000 2550200 3212500 2080900 2425800 3793400 3686600 5061100 5045500 2327600 4766000 TRUE FALSE FALSE 2371444.149 2957929.8 2886680.208 5647384.993 3317596.4 3231784.775 3794759.249 3896749.792 2529358.242 3572562.579 0.663793593 0.827957449 0.808013896 1.58076587 0.928632131 0.904612503 1.062195319 1.090743607 0.707995504 1 21.76852785 -5.029292163 24.99806664 1.046146076 0.763902707 0.258496848 0.21272194 909.5086577 776178.7488 0.057937465 0.100572873 9.35E-06 5.029292163 -0.282243369 GRSECDS(ph)SPEPK ddPTM_HeLa_A485_30min_R1 3 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GRS(0.023)ECDS(0.488)S(0.488)PEPK;GRS(0.001)ECDS(0.499)S(0.499)PEPK;GRSECDS(0.5)S(0.5)PEPK ;; 193.51 2.29E-12 394760000 572209 596392 556569 935820 1059040 739860 1047050 1239460 677144 1244300 TRUE FALSE FALSE 699494.918 666134.8565 762467.0339 986941.477 953598.2591 778597.9256 823339.2139 935480.4916 813040.5897 934118.9096 0.74882856 0.713115696 0.816241943 1.056548012 1.02085318 0.833510507 0.881407287 1.001457611 0.870382326 1 19.83324669 -5.034009948 5.492161335 0.947064835 0.737063633 0.636223345 0.068639157 0.119673312 10.09421817 0.019620613 0.036506482 9.25E-06 5.034009948 -0.210001202 GRSECDSS(ph)PEPK ddPTM_HeLa_A486_30min_R1 1 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GRS(0.003)ECDS(0.115)S(0.883)PEPK 90.759 0.028143 98960000 105330 104120 66783 64344 131470 122310 177130 171800 84504 155390 TRUE FALSE FALSE 97946.91092 95869.152 92643.16611 149796.0838 114979.8067 107220.6358 132810.2005 132684.8904 91828.87476 116479.3326 0.840895194 0.823057189 0.795361409 1.28603144 0.987126249 0.920512106 1.140203996 1.139128182 0.788370544 1 16.82971447 -5.159990674 23.41317425 1.040550517 0.820093732 0.37797371 0.127854152 24.1346681 5562.901238 0.03418243 0.059205713 6.92E-06 5.159990674 -0.220456785 GRSPGQLQR ddPTM_HeLa_A485_30min_R1 1 GRSPGQLQR 9 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4;Q9C040-2;Q9C040 O75382-3;Q9C040-2 TRIM3;TRIM2 Tripartite motif-containing protein 3;Tripartite motif-containing protein 2 0 0 74.92 0.014929 280970000 56464 86191 84852 56713 93866 78450 93245 115730 72280 73693 FALSE FALSE TRUE 69024.222 96270.28769 116242.2858 59811.08759 84520.37146 82557.52069 73322.44401 87347.03604 86785.93301 55322.69132 1.247665657 1.740159153 2.101168309 1.081131199 1.527770422 1.492290392 1.32535931 1.578864548 1.568722181 1 15.75558372 -11.93663823 0.282493891 1.15E-14 1.566644333 0.250159964 0.265366838 91.5900519 2.50878961 55.56389673 0.316130391 1.16E-12 11.93663823 1.566644333 GRSYDSS(ph)MESR ddPTM_HeLa_A485_30min_R1 1 GRSYDSSMESR 11 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 GRS(0.153)YDS(0.21)S(0.566)MES(0.072)R 126.17 0.00078675 437590000 215190 337570 412870 210960 481380 368590 325000 464410 301000 344460 TRUE FALSE FALSE 263058.2731 377045.875 565607.794 222484.2106 433452.117 387888.8025 255561.095 350512.7193 361407.9391 258592.4613 1.017269691 1.458069864 2.187255541 0.86036619 1.676197809 1.500000427 0.988277437 1.355463796 1.397596578 1 17.98032069 -6.726082074 24.98290503 1.214956116 1.467244135 0.112355363 0.358427469 424.9661622 300273.662 0.135803236 0.105188401 1.88E-07 6.726082074 0.252288019 GRT(ph)WTLCGTPEYLAPEIILSK ddPTM_HeLa_A485_30min_R1 3 GRTWTLCGTPEYLAPEIILSK 21 1 A0A087WVC4;B1APG2;B1APF9;B1APG3;A0A0A0MS54;B1APF8;P22694-5;P22694-9;P22694-6;P22694-7;P22694-3;P22612;P22694;P22694-4;P22694-10;P22694-8;P22694-2;K7ERP6;P17612-2;P17612;Q15136 A0A087WVC4;K7ERP6 PRKACB;PRKACG;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha 1 0 GRT(0.564)WT(0.426)LCGT(0.01)PEYLAPEIILSK;GRT(0.979)WT(0.021)LCGTPEYLAPEIILSK;GRT(0.49)WT(0.311)LCGT(0.2)PEYLAPEIILSK ;; 279.57 1.18E-72 699150000 416879 455977 426595 440692 615202 457490 720650 822360 399141 579384 TRUE FALSE FALSE 509612.2953 509299.5437 584410.2426 464765.8881 553950.3288 481443.469 566677.2403 620674.9206 479244.9376 434954.2316 1.171645792 1.170926747 1.34361319 1.068539755 1.273583031 1.106883056 1.302843378 1.426989038 1.101828429 1 18.73050407 -6.783076671 24.98411792 1.243497571 1.193738002 0 0.130237047 1062.003864 1226261.437 0.052067398 0.035140052 1.65E-07 6.783076671 -0.049759569 GRT(ph)WTLCGTPEYLAPEIILSK ddPTM_HeLa_A486_30min_R1 2 GRTWTLCGTPEYLAPEIILSK 21 1 A0A087WVC4;B1APG2;B1APF9;B1APG3;A0A0A0MS54;B1APF8;P22694-5;P22694-9;P22694-6;P22694-7;P22694-3;P22612;P22694;P22694-4;P22694-10;P22694-8;P22694-2;K7ERP6;P17612-2;P17612;Q15136 A0A087WVC4;K7ERP6 PRKACB;PRKACG;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha 1 0 GRT(0.833)WT(0.146)LCGT(0.021)PEYLAPEIILSK;GRT(0.456)WT(0.456)LCGT(0.088)PEYLAPEIILSK ; 268.77 1.52E-59 477450000 456586 650788 489190 263152 703559 604813 651067 681413 516499 629687 TRUE FALSE FALSE 424581.6792 599217.1888 678617.469 612631.155 615312.0698 530197.3213 488163.1503 526270.135 561269.5492 472009.2766 0.899519777 1.269502992 1.437720618 1.297921853 1.303601646 1.123277333 1.034223636 1.114957186 1.18910703 1 18.84845569 -6.369881784 5.223433152 1.09259512 1.256759321 0.228720182 0.136554907 0.354079426 14.21598221 0.050867859 0.044610666 4.27E-07 6.369881784 0.1641642 GRYPDHS(ph)VDRR ddPTM_HeLa_A485_30min_R1 1 GRYPDHSVDRR 11 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 GRYPDHS(1)VDRR 90.853 0.0011957 155890000 24977 26533 35310 18566 41132 34460 41147 39398 29627 30211 TRUE FALSE FALSE 30533.04748 29635.80354 48372.63837 19580.21357 37036.75366 36264.27231 32355.60731 29735.57873 35572.86715 22679.95369 1.346257047 1.306695946 2.132836735 0.863326876 1.633017164 1.59895707 1.426616992 1.311095213 1.568471771 1 14.46913007 -11.62785885 0.52366767 3.17E-12 1.469863869 0.172192282 0.305037909 355.3717971 17.71233696 403.4621773 0.13387583 2.36E-12 11.62785885 1.469863869 GRYPDHS(ph)VDRR ddPTM_HeLa_A486_30min_R1 2 GRYPDHSVDRR 11 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 GRYPDHS(1)VDRR;GRYPDHS(1)VDRR ; 125.36 2.76E-05 206049000 63497 66260 67804 18195.3 83885 62567 71273 75416 50730 69678 TRUE FALSE FALSE 59046.1882 61009.31629 94059.52465 42359.57794 73363.3611 54848.11967 53439.74155 58245.42312 55127.31725 52230.17527 1.130499522 1.168085613 1.800865576 0.811017342 1.404616407 1.050123217 1.023158381 1.115168058 1.055468739 1 15.67259592 -6.077618448 1.108036794 1.048555836 1.294027427 0.150177008 0.23726666 0.965385992 2.500722017 0.114395326 0.123110289 8.36E-07 6.077618448 0.245471592 GRYPDHSVDRR ddPTM_HeLa_A485_30min_R1 6 GRYPDHSVDRR 11 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 0 0 ;;;;; ;;;;; 190.66 6.28E-11 517309000 220488 316540 299221 238820 311457 317108 292624 411751 264413 301238 FALSE FALSE TRUE 269534.7949 353556.5995 409915.2995 251866.1319 280447.2475 333711.2845 230102.4919 310768.4216 317478.2638 226144.9105 1.191867614 1.56340728 1.812622264 1.113737786 1.240121862 1.475652421 1.017500201 1.374200379 1.403870921 1 17.786888 -5.282536127 24.99087532 1.249280234 1.526709944 0.29408615 0.20500682 1016.155551 1203719.586 0.057415424 0.085253983 5.22E-06 5.282536127 0.27742971 GRYPDHSVDRR ddPTM_HeLa_A486_30min_R1 4 GRYPDHSVDRR 11 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 0 0 ;;; ;;; 176.32 7.52E-09 268473000 144357 120309 126165 43889 158365 99988 107550 118065 73023 109381 FALSE FALSE TRUE 134238.3198 110775.2767 175019.4668 102175.81 138501.385 87652.49716 80639.85245 91184.17684 79352.69244 81991.28565 1.637226672 1.351061589 2.134610592 1.246178898 1.689220798 1.069046503 0.983517356 1.112120344 0.967818614 1 16.32318296 -6.283798823 8.704908867 1.030108801 1.605986574 0.632631091 0.222929486 0.193292225 69.52669707 0.07473811 0.067100141 5.20E-07 6.283798823 0.575877773 GRYRS(ph)PYSGPK ddPTM_HeLa_A485_30min_R1 4 GRYRSPYSGPK 11 2 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 GRY(0.001)RS(0.999)PYSGPK;GRYRS(1)PYSGPK;GRYRS(0.952)PYS(0.048)GPK;GRY(0.001)RS(0.993)PY(0.003)S(0.003)GPK ;;; 131.86 1.66E-05 2639090000 467723 1508610 971087 326641 1262015 1681020 1782060 3395760 946231 472764 TRUE FALSE FALSE 571766.3677 1685028.816 1330332.492 344484.5707 1136364.355 1769035.608 1401308.323 2562944.536 1136130.882 354912.6354 1.611005951 4.74772845 3.748337926 0.970617939 3.201814312 4.98442555 3.94831906 7.221339226 3.201156479 1 18.43710441 -6.144232788 5.82489337 4.445715822 2.880445519 0.089412191 1.766062017 0.457034761 20.1970909 0.572176191 0.573367633 7.17E-07 6.144232788 -1.565270304 GRYRS(ph)PYSGPK ddPTM_HeLa_A486_30min_R1 1 GRYRSPYSGPK 11 2 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 GRYRS(0.739)PY(0.003)S(0.259)GPK 63.185 0.016728 222150000 317710 262580 247560 82096 377030 180190 225870 279530 197920 271260 TRUE FALSE FALSE 295440.1697 241772.2045 343421.8619 191123.6369 329739.3817 157959.9898 169354.937 215887.1211 215075.865 203334.7304 1.452974458 1.189035459 1.688948372 0.939945854 1.621657948 0.776847071 0.83288741 1.061732645 1.057742888 1 17.63349713 -6.269471318 24.99947763 0.942640628 1.360867556 0.502863953 0.214729735 524.4133797 1632236.66 0.071529733 0.064161611 5.38E-07 6.269471318 0.418226928 GS(ph)DGEDSASGGKTPAPGPEAASGEWELLR ddPTM_HeLa_A485_30min_R1 2 GSDGEDSASGGKTPAPGPEAASGEWELLR 29 1 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 0 GS(1)DGEDSASGGKTPAPGPEAASGEWELLR;GS(0.998)DGEDS(0.001)AS(0.001)GGKTPAPGPEAASGEWELLR ; 146.59 1.50E-09 239841000 50554 60555 52634 43678.6 70021 66076 83493 109912 51329 69971 TRUE FALSE FALSE 61799.56289 67636.38049 72105.50688 46064.65132 63049.46338 69535.63719 65654.03847 82955.90966 61630.25948 52528.51742 1.176495472 1.287612592 1.372692595 0.876945583 1.200290175 1.323769271 1.249874196 1.579254731 1.173272396 1 15.68081325 -6.204974515 6.533463962 1.300390289 1.181476908 0.032200647 0.181130952 0.632713558 59.13841194 0.060009072 0.059737004 6.24E-07 6.204974515 -0.118913381 GS(ph)DGEDSASGGKTPAPGPEAASGEWELLR ddPTM_HeLa_A486_30min_R1 3 GSDGEDSASGGKTPAPGPEAASGEWELLR 29 1 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 0 GS(0.994)DGEDS(0.003)AS(0.001)GGKT(0.001)PAPGPEAASGEWELLR;GS(0.995)DGEDS(0.001)AS(0.001)GGKT(0.002)PAPGPEAASGEWELLR;GS(0.998)DGEDS(0.001)AS(0.001)GGKT(0.001)PAPGPEAASGEWELLR ;; 108.6 0.00011669 237223000 64168 58560 39268.9 28899.2 66913 55762 76200 76924 48108 75538 TRUE FALSE FALSE 59670.15456 53919.49233 54474.86974 67278.79808 58520.1476 48882.65139 57133.95404 59410.08444 52278.04017 56622.79313 1.053818635 0.952257728 0.9620661 1.188192852 1.03350867 0.863303428 1.009027476 1.049225606 0.92326848 1 15.7890953 -6.046298777 24.99474091 0.971641111 1.037814623 0.169534159 0.076305863 877.9339961 473956.9478 0.026386764 0.026387478 8.99E-07 6.046298777 0.066173512 GS(ph)DPAMELR ddPTM_HeLa_A485_30min_R1 1 GSDPAMELR 9 0 M0QYC5;O75182-2;O75182 M0QYC5 SIN3B Paired amphipathic helix protein Sin3b 1 0 GS(1)DPAMELR 95.358 0.026004 413680000 13361 21541 18761 13087 21478 19638 16931 32989 13348 11116 TRUE FALSE FALSE 16333.10836 24060.03257 25701.47461 13801.90967 19339.57491 20666.21531 13313.55354 24898.39603 16026.82116 8344.985775 1.957236213 2.883172388 3.079870392 1.653916501 2.317508433 2.476482989 1.595395594 2.983635526 1.920533072 1 13.02669387 -10.5822917 0.331117519 1.42E-13 2.443581007 0.387019383 0.506446261 26.23557378 1.661095637 22.54582244 0.451016322 2.62E-11 10.5822917 2.443581007 GS(ph)DS(ph)EDGEFEIQAEDDAR ddPTM_HeLa_A486_30min_R1 1 GSDSEDGEFEIQAEDDAR 18 0 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 2 0 GS(1)DS(1)EDGEFEIQAEDDAR 95.197 0.0011363 155450000 68503 87038 62992 38825 82715 86226 86283 80362 81181 93965 TRUE FALSE FALSE 63701.29345 80140.79189 87384.18938 90386.56211 72340.11341 75588.3128 64694.08079 62065.32689 88217.83444 70435.55239 0.904391196 1.137788931 1.240626167 1.283251981 1.027039768 1.073155675 0.918486171 0.881164764 1.252461739 1 16.10401619 -5.958997138 24.81902065 1.015313874 1.149180292 0.154261272 0.131749731 241.8962627 146418.5964 0.041967416 0.047586525 1.10E-06 5.958997138 0.133866418 GS(ph)DSESDLPHR ddPTM_HeLa_A486_30min_R1 1 GSDSESDLPHR 11 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GS(0.938)DS(0.062)ESDLPHR 133.48 2.27E-05 281330000 130770 133460 104920 76661 124930 132760 126380 99600 127290 134560 TRUE FALSE FALSE 121603.6983 122884.1435 145547.8339 178470.6822 109260.1145 116381.421 94758.38729 76923.25425 138323.5997 100865.3002 1.205604882 1.218299488 1.442992125 1.769396234 1.083227971 1.153830116 0.939454769 0.762633474 1.371369534 1 16.62207042 -5.967385886 24.98626946 1.034500421 1.401424905 0.421606805 0.205150457 191.2765616 146539.6662 0.065843183 0.07465868 1.08E-06 5.967385886 0.366924484 GS(ph)EPLGIS(ph)IVS(ph)GEK ddPTM_HeLa_A486_30min_R1 1 GSEPLGISIVSGEK 14 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 3 0 GS(1)EPLGIS(1)IVS(1)GEK 49.482 0.0077533 0 249600 217250 129050 78385 155320 178320 271150 215180 155910 481980 TRUE FALSE FALSE 232104.3289 200034.3188 179021.6161 182484.2414 135838.3173 156320.6914 203305.4021 166188.2113 169424.4043 361289.0708 0.642433851 0.553668336 0.495507976 0.505092061 0.375982359 0.432674841 0.562722259 0.459986822 0.468944172 1 18.46279409 -10.45838802 3.650546851 1.005306514 0.496372726 0.819138591 0.070514676 105191347.3 159461862 5738731.378 0.018734623 3.48E-11 10.45838802 -0.508933788 GS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_A485_30min_R1 4 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK ;;; 345.14 4.17E-115 1731580000 990570 1034810 1068453 1162830 1279560 927037 1112530 979945 1061290 1523460 TRUE FALSE FALSE 1210918.879 1155822.028 1463718.227 1226352.458 1152162.514 975575.2238 874828.877 739611.9523 1274281.168 1143689.459 1.058782932 1.010608272 1.279821384 1.072277486 1.007408527 0.853007096 0.764918195 0.646689489 1.114184587 1 20.12526395 -6.055874885 2.462753205 0.845891835 1.110979249 0.380959548 0.135863537 0.280029535 3.36880765 0.0484256 0.050976823 8.79E-07 6.055874885 0.265087415 GS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_A486_30min_R1 6 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK ;;;;; 343.13 2.16E-102 2626950000 1563033 1782370 1513066 610763 1768779 1798627 1819077 1745313 1515960 1709067 TRUE FALSE FALSE 1453472.458 1641128.51 2098965.677 1421887.13 1546922.245 1576730.688 1363924.694 1347943.33 1647364.633 1281105.499 1.134545484 1.281025264 1.638401894 1.10989074 1.207490129 1.23075788 1.064646663 1.052171996 1.285893031 1 20.28895786 GS(ph)GGLFSPSTAHVPDGALGQR ddPTM_HeLa_A485_30min_R1 5 GSGGLFSPSTAHVPDGALGQR 21 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GS(0.999)GGLFS(0.001)PSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(0.997)GGLFS(0.001)PS(0.001)T(0.001)AHVPDGALGQR ;;;; 205.13 9.71E-27 2061060000 820938 1005015 1200500 615194 1190760 728499 912955 770463 1060134 1119780 TRUE FALSE FALSE 1003552.826 1122542.762 1644614.907 648800.4905 1072203.753 766642.0812 717894.7061 581505.7412 1272893.17 840639.454 1.193796961 1.335343894 1.956385581 0.771794004 1.275462088 0.911974899 0.853986454 0.691742148 1.514196322 1 19.68112764 -5.281855939 24.99938606 0.99127639 1.479192419 0.374655773 0.291061836 820.5518384 1004736.031 0.080735105 0.119907875 5.23E-06 5.281855939 0.48791603 GS(ph)GGLFSPSTAHVPDGALGQR ddPTM_HeLa_A486_30min_R1 5 GSGGLFSPSTAHVPDGALGQR 21 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GS(0.794)GGLFS(0.147)PS(0.032)T(0.027)AHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(1)GGLFSPSTAHVPDGALGQR;GS(0.999)GGLFS(0.001)PSTAHVPDGALGQR;GS(0.957)GGLFS(0.035)PS(0.003)T(0.004)AHVPDGALGQR ;;;; 158.94 9.88E-11 2903910000 719498 865313 803218 127280 867083 692365 790378 758253 754419 572675 TRUE FALSE FALSE 669064.9057 796742.4465 1114245.521 296314.2724 758325.3649 606948.0458 592617.0646 585615.3444 819812.6463 429273.4525 1.558598375 1.856025435 2.595654388 0.690269269 1.766532173 1.413896066 1.380511795 1.364201166 1.909767868 1 18.71153743 -5.255605148 24.99990674 1.395861512 1.988685937 0.345076515 0.403560622 578.5268967 2479002.148 0.107140221 0.179317497 5.55E-06 5.255605148 0.592824425 GS(ph)GLAGPKR ddPTM_HeLa_A485_30min_R1 2 GSGLAGPKR 9 1 Q9Y6W5 Q9Y6W5 WASF2 Wiskott-Aldrich syndrome protein family member 2 1 0 GS(1)GLAGPKR;GS(1)GLAGPKR ; 110.08 0.00055043 186519000 156742 202785 141610 128331 206823 207002 247710 264020 158886 184559 TRUE FALSE FALSE 191608.7171 226498.9418 193997.4319 135341.3976 186230.9759 217840.3046 194784.7349 199268.681 190772.9628 138551.8379 1.382938834 1.634759562 1.400179419 0.976828598 1.344124905 1.572265717 1.405861791 1.43822474 1.376906765 1 17.08006632 -8.070454165 18.9762403 0.999999999 1.394209438 0.340910344 0.163865622 2207.306766 594522.0234 0.17068038 0.044069485 8.50E-09 8.070454165 0.39420944 GS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_A485_30min_R1 1 GSGSEQEGEDEEGGER 16 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 GS(1)GS(1)EQEGEDEEGGER 224.4 4.94E-33 0 155980 130010 160740 215800 241410 131690 157770 139760 168460 259530 TRUE FALSE FALSE 190677.2129 145213.5386 220204.4149 227588.6076 217374.3728 138585.0848 124061.1506 105483.6409 202268.3768 194833.9473 0.978665246 0.745319492 1.130215848 1.168115776 1.115690442 0.71129845 0.636753258 0.541402781 1.038157773 1 17.57188554 -6.268327477 24.82065074 0.74756204 1.025426197 0.300373999 0.18011143 581.5805188 2095667.575 0.064736559 0.058368177 5.39E-07 6.268327477 0.277864158 GS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_A486_30min_R1 2 GSGSEQEGEDEEGGER 16 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 GS(1)GS(1)EQEGEDEEGGER;GS(1)GS(1)EQEGEDEEGGER ; 289.24 5.39E-60 685830000 296990 567790 457900 196669 627160 550720 539290 552110 490430 381810 TRUE FALSE FALSE 276172.5347 522796.2525 635211.143 457855.3711 548495.7448 482777.7657 404353.938 426406.6055 532940.8673 286202.2908 0.96495571 1.826666904 2.219448143 1.599761378 1.916461756 1.686841025 1.412825651 1.48987838 1.862112514 1 18.12667569 -6.655410999 5.572173877 1.483219584 1.740685435 0.105525534 0.356628543 0.518562891 23.64894962 0.138386458 0.105872516 2.21E-07 6.655410999 0.257465851 GS(ph)GSPTHSLSQK ddPTM_HeLa_A485_30min_R1 2 GSGSPTHSLSQK 12 0 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 GS(0.541)GS(0.376)PT(0.083)HSLSQK;GS(0.512)GS(0.47)PT(0.017)HSLSQK ; 163.99 1.88E-10 2892570000 2004640 2607900 2422520 1820710 3056000 2658500 3291800 3496600 2399480 2870000 TRUE FALSE FALSE 2450565.252 2912871.219 3318710.957 1920170.777 2751733.91 2797694.949 2588480.038 2639053.368 2881033.627 2154561.818 1.137384516 1.351955277 1.540318281 0.891211735 1.277166376 1.298498342 1.201395113 1.224867787 1.337178447 1 21.03896306 -11.08122087 2.35473649 0.608668651 1.251921782 0.185126785 0.158041133 18858361.73 7380270.469 39474376.42 0.038995904 8.29E-12 11.08122087 0.643253131 GS(ph)GSPTHSLSQK ddPTM_HeLa_A486_30min_R1 2 GSGSPTHSLSQK 12 0 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 GS(0.595)GS(0.401)PT(0.004)HSLSQK;GS(0.494)GS(0.494)PT(0.012)HSLSQK ; 132.31 1.76E-05 1386340000 2234800 2319900 1736570 292470 2564000 1978360 2339600 2270300 1906060 1911310 TRUE FALSE FALSE 2078152.061 2136062.675 2409016.411 680884.9406 2242399.212 1734290.058 1754207.334 1753402.25 2071278.815 1432705.535 1.450508851 1.49092931 1.681445595 0.475244161 1.5651501 1.210500005 1.224401868 1.223839936 1.445711463 1 20.45031069 GS(ph)IGLLLGK ddPTM_HeLa_A485_30min_R1 2 GSIGLLLGK 9 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 GS(1)IGLLLGK;GS(1)IGLLLGK ; 140.07 0.00013733 66579000 170406 152470 148585 183350 168721 144925 164995 142783 120707 215831 TRUE FALSE FALSE 208312.2268 170300.0402 203552.7746 193365.9462 151922.5448 152513.0489 129742.4704 107765.2454 144931.7877 162028.3038 1.285653321 1.051051182 1.256279118 1.193408446 0.937629669 0.941274119 0.800739546 0.665101361 0.894484385 1 17.30588633 -5.976869148 1.722751409 0.825215942 1.196685464 0.69740514 0.104016982 0.192559708 1.161933946 0.039208688 0.044090061 1.05E-06 5.976869148 0.371469523 GS(ph)IGLLLGK ddPTM_HeLa_A486_30min_R1 1 GSIGLLLGK 9 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 GS(1)IGLLLGK 106.4 0.0015447 0 49534 52164 40338 27398 51663 57999 58956 57879 49759 67008 TRUE FALSE FALSE 46061.92239 48030.33466 55957.95389 63783.92862 45182.9448 50843.67307 44204.58523 44701.21519 54072.15018 50228.76065 0.917042782 0.956231729 1.114062007 1.269868653 0.899543294 1.012242238 0.880065219 0.889952581 1.076517706 1 15.61622606 GS(ph)KSPDLLMYQGPPDTAEIIK ddPTM_HeLa_A485_30min_R1 2 GSKSPDLLMYQGPPDTAEIIK 21 1 P82909 P82909 MRPS36 "28S ribosomal protein S36, mitochondrial" 1 0 GS(0.852)KS(0.148)PDLLMYQGPPDTAEIIK;GS(0.625)KS(0.375)PDLLMYQGPPDTAEIIK ; 312.45 3.06E-102 400010000 491990 394760 265860 632040 453110 594710 833210 865270 365340 1009840 TRUE FALSE FALSE 601431.4782 440923.748 364212.6774 666566.7448 407996.7774 625848.096 655187.8768 653061.1758 438660.3869 758105.4727 0.793334832 0.58161267 0.48042481 0.879253308 0.538179438 0.825542248 0.864243697 0.861438414 0.578627121 1 19.53203905 -6.290429791 23.58869861 0.819702347 0.653316997 0.255600162 0.146057024 528.0192865 429632.3502 0.050060837 0.044159506 5.12E-07 6.290429791 -0.16638535 GS(ph)KSPDLLMYQGPPDTAEIIK ddPTM_HeLa_A486_30min_R1 1 GSKSPDLLMYQGPPDTAEIIK 21 1 P82909 P82909 MRPS36 "28S ribosomal protein S36, mitochondrial" 1 0 GS(0.602)KS(0.398)PDLLMYQGPPDTAEIIK 180.71 2.15E-19 199900000 159470 141240 85973 78883 154760 174770 224650 218320 150580 244060 TRUE FALSE FALSE 148291.9765 130047.628 119264.048 183643.6105 135348.5577 153208.6543 168440.1939 168613.3019 163632.3956 182945.7874 0.810578798 0.710853362 0.651909233 1.003814371 0.739828775 0.837453852 0.920710973 0.921657198 0.894431066 1 17.48105667 -6.289312874 0.31440081 1.001132391 0.688672713 0.429827911 0.086329455 2.138299166 0.447932569 0.115964314 0.240228777 5.14E-07 6.289312874 -0.312459677 GS(ph)KSPSPRPNMPVR ddPTM_HeLa_A486_30min_R1 2 GSKSPSPRPNMPVR 14 2 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 GS(0.465)KS(0.465)PS(0.07)PRPNMPVR;GS(0.968)KS(0.029)PS(0.002)PRPNMPVR ; 89.311 0.00064869 751600000 998610 1051380 764250 421710 1192960 1030110 1220650 1220720 805160 1152950 TRUE FALSE FALSE 928612.5958 968064.8197 1060188.067 981762.192 1043327.833 903025.5016 915230.4593 942788.7041 874951.9171 864243.8156 1.074479885 1.1201293 1.226723348 1.135978267 1.207214693 1.044873548 1.058995671 1.090882789 1.01239014 1 19.72107885 -6.279380582 24.57625484 1.048206543 1.154244854 0.589425864 0.046340468 510.0742033 698708.7958 0.016536196 0.014617766 5.26E-07 6.279380582 0.106038311 GS(ph)LAS(ph)LDSLR ddPTM_HeLa_A485_30min_R1 2 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 2 0 GS(1)LAS(0.999)LDS(0.001)LR;GS(1)LAS(0.999)LDS(0.001)LR ; 118.76 0.00068534 221920000 128726 149361 179629 162357 181605 158457 161116 140205 159082 234000 TRUE FALSE FALSE 157360.6546 166827.4697 246081.2421 171226.1518 163523.7685 166753.5635 126692.2504 105819.5039 191008.2982 175668.1065 0.895783861 0.949674207 1.400830504 0.974713938 0.930867713 0.949253492 0.721202346 0.602383131 1.087324854 1 17.42249276 -6.004790189 1.79022292 0.832959966 1.0735192 0.179985277 0.181492537 0.524380605 3.396050228 0.07084984 0.077853822 9.89E-07 6.004790189 0.240559235 GS(ph)LAS(ph)LDSLR ddPTM_HeLa_A486_30min_R1 3 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 2 0 GS(1)LAS(0.99)LDS(0.01)LR;GS(1)LAS(1)LDSLR;GS(1)LAS(1)LDSLR ;; 117.03 0.0005813 265762000 816354 926294 962684 299727 1288740 928182 880230 887180 1128880 1186310 TRUE FALSE FALSE 759131.8003 852891.0899 1335461.026 697779.6034 1127094.212 813672.3419 659987.1439 685188.481 1226732.227 889250.2544 0.853676225 0.959112562 1.501783125 0.784683052 1.267465718 0.9150094 0.742183812 0.770523795 1.379512934 1 19.76222996 GS(ph)LASLDSLR ddPTM_HeLa_A485_30min_R1 2 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GS(0.992)LAS(0.008)LDSLR;GS(0.999)LAS(0.001)LDSLR ; 186.46 1.01E-09 262280000 212032 300370 288290 241890 325720 267740 268724 255677 299630 361500 TRUE FALSE FALSE 259197.7869 335495.6586 394940.4677 255103.8382 293290.1731 281758.4524 211308.9221 192971.8149 359762.9926 271384.7029 0.955093578 1.236236439 1.455279032 0.940008171 1.08071741 1.038225255 0.778632398 0.711063714 1.325656858 1 18.04997988 -5.30392502 24.96899962 0.967981205 1.217606573 0.231707472 0.193646897 636.6831769 374180.089 0.055380713 0.082143456 4.97E-06 5.30392502 0.249625368 GS(ph)LDESSLGFGYPK ddPTM_HeLa_A485_30min_R1 3 GSLDESSLGFGYPK 14 0 Q2KJU6;Q9BUZ4 Q2KJU6 TRAF4 TNF receptor-associated factor 4 1 0 GS(1)LDESSLGFGYPK;GS(1)LDESSLGFGYPK;GS(1)LDESSLGFGYPK ;; 286.74 1.30E-49 811699000 1107370 965680 895590 1338920 1300740 1062180 1328310 1245470 1139520 1741140 TRUE FALSE FALSE 1353700.636 1078607.876 1226906.01 1412061.809 1171233.758 1117794.102 1044505.717 940016.5297 1368211.212 1307105.841 1.035647301 0.825187863 0.9386432 1.080296457 0.896051201 0.855167246 0.799098041 0.719158694 1.046748602 1 20.31794454 -5.988183056 24.7033131 0.862777366 0.961218957 0.110666755 0.107771941 374.9299878 783785.216 0.033230185 0.037649936 1.03E-06 5.988183056 0.098441591 GS(ph)LDESSLGFGYPK ddPTM_HeLa_A486_30min_R1 3 GSLDESSLGFGYPK 14 0 Q2KJU6;Q9BUZ4 Q2KJU6 TRAF4 TNF receptor-associated factor 4 1 0 GS(1)LDESSLGFGYPK;GS(0.981)LDES(0.018)SLGFGYPK;GS(1)LDESSLGFGYPK ;; 274.45 7.15E-49 880160000 1118044 1389284 1004544 493581 1337584 1445640 1496118 1458825 1124431 1453775 TRUE FALSE FALSE 1039674.889 1279192.076 1393530.339 1149081.512 1169811.742 1267291.635 1121773.452 1126682.393 1221897.584 1089740.278 0.954057504 1.173850414 1.278772904 1.054454475 1.073477567 1.162929976 1.029395238 1.033899927 1.121274133 1 20.0555529 -6.772243974 24.98850253 1.048967309 1.12150836 0.138327293 0.085009836 455.3900992 1053200.1 0.036204062 0.024681204 1.69E-07 6.772243974 0.072541052 GS(ph)LPSGTTIEWLEPK ddPTM_HeLa_A486_30min_R1 1 GSLPSGTTIEWLEPK 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 GS(1)LPSGTTIEWLEPK 164.7 5.71E-12 51774000 64187 67307 35531 24837 40217 48405 58189 58178 41095 62341 TRUE FALSE FALSE 59687.82276 61973.34819 49289.55475 57821.79119 35172.60885 42433.28325 43629.49674 44932.13942 44657.14769 46730.40783 1.277280159 1.326188901 1.054764061 1.237348311 0.752670702 0.90804436 0.933642542 0.961518238 0.955633596 1 15.51207401 -5.743120662 24.98466667 0.916886675 1.219121352 0.736698577 0.089397135 129.3412643 176406.1543 0.027158371 0.034993233 1.81E-06 5.743120662 0.302234677 GS(ph)NRSSLMDTADGVPVSSR ddPTM_HeLa_A485_30min_R1 1 GSNRSSLMDTADGVPVSSR 19 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 GS(0.713)NRS(0.171)S(0.116)LMDTADGVPVSSR 150.09 7.36E-09 458840000 151780 196310 176410 131500 228750 178600 224810 264410 179880 239230 TRUE FALSE FALSE 185542.9374 219266.7468 241671.4 138683.512 205974.8468 187951.2198 176777.507 199563.0329 215980.266 179594.3637 1.033122274 1.220899934 1.345651361 0.772204145 1.14688926 1.04653184 0.98431545 1.111187616 1.202600469 1 17.45438255 -5.220974586 24.99953553 1.04500424 1.201991976 0.244833903 0.130092562 774.1358475 478267.4395 0.034919134 0.060480881 6.01E-06 5.220974586 0.156987736 GS(ph)PALLPS(ph)TPTMPLFPHVLDLLAPLDSSR ddPTM_HeLa_A486_30min_R1 2 GSPALLPSTPTMPLFPHVLDLLAPLDSSR 29 0 Q9UGR2 Q9UGR2 ZC3H7B Zinc finger CCCH domain-containing protein 7B 2 0 GS(0.998)PALLPS(0.475)T(0.448)PT(0.079)MPLFPHVLDLLAPLDSSR;GS(1)PALLPS(0.481)T(0.441)PT(0.079)MPLFPHVLDLLAPLDSSR ; 71.359 0.0047803 691440000 22847 19737.1 19456.1 7001.3 25594 16468.3 21395 23459 16311.7 24000 TRUE FALSE FALSE 21245.54328 18173.06031 26990.02297 16299.38023 22383.76187 14436.60858 16041.74471 18117.89781 17725.61129 17990.24379 1.180948048 1.010161982 1.500258879 0.906012193 1.244216706 0.802468758 0.891691347 1.007095736 0.985290222 1 14.13492712 -6.253406107 24.85342127 0.934901578 1.163401473 0.355654247 0.155382722 646.4620671 2000032.139 0.050067059 0.049231203 5.58E-07 6.253406107 0.228499896 GS(ph)PALLPSTPTMPLFPHVLDLLAPLDSSR ddPTM_HeLa_A485_30min_R1 1 GSPALLPSTPTMPLFPHVLDLLAPLDSSR 29 0 Q9UGR2 Q9UGR2 ZC3H7B Zinc finger CCCH domain-containing protein 7B 1 0 GS(0.987)PALLPS(0.01)T(0.002)PT(0.001)MPLFPHVLDLLAPLDSSR 198.74 1.23E-28 1785400000 61656 109140 69985 56543 89757 94405 46268 116990 69475 105190 TRUE FALSE FALSE 75371.16449 121902.9736 95875.36382 59631.80092 80820.47792 99347.89982 36382.46383 88298.01907 83417.99524 78968.06888 0.954451154 1.543699565 1.21410293 0.755138143 1.023457697 1.258076856 0.460723737 1.11814839 1.056350958 1 16.26898179 -5.088308709 7.314796364 0.95418182 1.280611615 0.22047174 0.244013986 0.353053271 25.46016059 0.064654438 0.113075342 8.16E-06 5.088308709 0.326429796 GS(ph)PALLPSTPTMPLFPHVLDLLAPLDSSR ddPTM_HeLa_A486_30min_R1 2 GSPALLPSTPTMPLFPHVLDLLAPLDSSR 29 0 Q9UGR2 Q9UGR2 ZC3H7B Zinc finger CCCH domain-containing protein 7B 1 0 GS(1)PALLPSTPTMPLFPHVLDLLAPLDSSR;GS(0.999)PALLPSTPTMPLFPHVLDLLAPLDSSR ; 187.69 9.25E-21 810670000 26441 32368 52110 16242.2 50858 40860 33592 54555 43521 41788 TRUE FALSE FALSE 24587.62244 29803.0418 72288.38755 37812.66244 44478.91541 35819.10863 25186.9263 42134.01743 47293.43532 31324.01281 0.784944847 0.951443928 2.307762674 1.207146181 1.419962241 1.143503192 0.804077257 1.345102803 1.509814072 1 14.93498142 -6.270076669 22.26383741 1.159791964 1.360007348 0.039993898 0.416174194 549.683661 1416876.651 0.15245382 0.136935287 5.37E-07 6.270076669 0.200215384 GS(ph)PATS(ph)PHLGR ddPTM_HeLa_A486_30min_R1 1 GSPATSPHLGR 11 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 2 0 GS(1)PAT(0.039)S(0.961)PHLGR 84.753 0.0014687 0 160200 240880 206770 56481 212890 186970 196200 191730 185310 180800 TRUE FALSE FALSE 148970.8073 221791.7915 286836.8815 131490.6224 186187.3511 163903.5424 147108.6848 148077.2644 201372.82 135526.5032 1.099200553 1.636519694 2.116463383 0.970220727 1.373807681 1.209383689 1.085460639 1.092607431 1.485855646 1 17.04821548 -5.288497033 24.9473502 1.183886124 1.619307312 0.356778726 0.272647035 772.9877506 712698.472 0.076691585 0.113785594 5.15E-06 5.288497033 0.435421188 GS(ph)PATSPHLGR ddPTM_HeLa_A485_30min_R1 2 GSPATSPHLGR 11 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 GS(0.999)PAT(0.001)SPHLGR;GS(0.992)PAT(0.008)SPHLGR ; 129.54 3.36E-05 661020000 218015 300870 334210 185445 307960 213543 240750 202267 252910 284420 TRUE FALSE FALSE 266511.6846 336054.1293 457848.1866 195575.3908 277298.4211 224723.7813 189311.7958 152660.7011 303666.7172 213519.3284 1.248185289 1.57388154 2.144293869 0.915961062 1.298704071 1.052475123 0.886626036 0.714973685 1.422197791 1 17.70400715 -5.286620638 24.87666695 1.034399637 1.647296462 0.506245558 0.277729745 564.3464829 557518.8989 0.0788305 0.116977431 5.17E-06 5.286620638 0.612896824 GS(ph)PATSPHLGR ddPTM_HeLa_A486_30min_R1 3 GSPATSPHLGR 11 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 GS(1)PATSPHLGR;GS(1)PATSPHLGR;GS(0.983)PAT(0.017)SPHLGR ;; 143.76 7.50E-07 939730000 346103 509039 442989 41435.2 454149 343718 419929 398448 416778 282285 TRUE FALSE FALSE 321842.967 468700.8958 614526.2045 96463.23962 397185.3976 301313.5678 314858.3226 307730.0885 452904.6526 211598.9986 1.521004206 2.215043071 2.904201856 0.455877581 1.877066528 1.423983902 1.487995334 1.454307867 2.140391285 1 17.69097327 -5.246941841 24.99707208 1.448425827 2.213578929 0.325903096 0.529868603 995.9540126 1717250.081 0.140180723 0.241398009 5.66E-06 5.246941841 0.765153102 GS(ph)PDGSHPVVVAPYNGGPPR ddPTM_HeLa_A486_30min_R1 1 GSPDGSHPVVVAPYNGGPPR 20 0 O43474-4;O43474-1;O43474 O43474-4 KLF4 Krueppel-like factor 4 1 0 GS(0.995)PDGS(0.005)HPVVVAPYNGGPPR 50.831 0.026546 182390000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GS(ph)PDGSLQTGKPSAPK ddPTM_HeLa_A485_30min_R1 2 GSPDGSLQTGKPSAPK 16 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.996)PDGS(0.004)LQTGKPSAPK;GS(0.988)PDGS(0.012)LQTGKPSAPK ; 211.17 1.49E-24 6142590000 2846730 2554880 1818580 3623050 2798770 2677220 3565920 3433080 2470590 4296950 TRUE FALSE FALSE 3479975.267 2853650.991 2491348.419 3820968.047 2520114.632 2817395.099 2804032.061 2591111.747 2966414.751 3225799.445 1.078794676 0.884633729 0.772319688 1.184502668 0.781237233 0.873394378 0.869251827 0.803246386 0.91959057 1 21.62122531 GS(ph)PDGSLQTGKPSAPK ddPTM_HeLa_A486_30min_R1 6 GSPDGSLQTGKPSAPK 16 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.944)PDGS(0.052)LQT(0.004)GKPSAPK;GS(0.956)PDGS(0.044)LQTGKPSAPK;GS(0.958)PDGS(0.042)LQTGKPSAPK;GS(0.997)PDGS(0.003)LQTGKPSAPK;GS(0.974)PDGS(0.025)LQT(0.001)GKPSAPK;GS(0.559)PDGS(0.438)LQT(0.003)GKPSAPK ;;;;; 204.78 3.72E-24 6757600000 4261980 4290580 2168520 1406365 3310790 4206310 4449260 4148110 3333110 4909020 TRUE FALSE FALSE 3963237.211 3950578.815 3008229.019 3274088.794 2895519.846 3687378.239 3336008.089 3203675.906 3622026.658 3679769.44 1.077034112 1.073594115 0.817504756 0.889753787 0.786875345 1.002067738 0.906580736 0.870618651 0.984308044 1 21.81118394 -4.742672636 24.76053591 0.90103656 1.075314332 0.483174512 0.069307115 171.2088282 225886.1953 0.017207529 0.045352029 1.81E-05 4.742672636 0.174277773 GS(ph)PDGSLQTGKPSAPKK ddPTM_HeLa_A485_30min_R1 1 GSPDGSLQTGKPSAPKK 17 2 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.991)PDGS(0.009)LQTGKPSAPKK 122.47 1.18E-05 2184800000 1177900 990920 585380 1192300 1012900 1270000 1597800 1735900 851310 1590900 TRUE FALSE FALSE 1439919.791 1106799.474 801936.4217 1257432.33 912052.1195 1336495.236 1256416.977 1310167.803 1022160.108 1194317.908 1.205641966 0.92672099 0.671459765 1.052845579 0.763659419 1.119044793 1.051995426 1.097000886 0.855852618 1 20.18775548 -6.284653196 24.95901764 1.032542331 0.917333826 0.097461133 0.151636837 1774.324121 1907710.082 0.053140877 0.046894698 5.19E-07 6.284653196 -0.115208506 GS(ph)PDGSLQTGKPSAPKK ddPTM_HeLa_A486_30min_R1 2 GSPDGSLQTGKPSAPKK 17 2 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.999)PDGS(0.001)LQTGKPSAPKK;GS(0.824)PDGS(0.176)LQTGKPSAPKK ; 114.72 4.97E-05 2812410000 3861380 3286860 1308840 1172140 2520970 3308230 3895000 3476670 2390530 4749380 TRUE FALSE FALSE 3590717.202 3026397.243 1815657.9 2728801.157 2204766.435 2900094.218 2920429.803 2685108.136 2597743.065 3560104.335 1.008598868 0.850086671 0.510001317 0.766494715 0.619298264 0.814609333 0.820321409 0.754221754 0.729681723 1 21.76348809 -10.5167773 8.607881435 1.000016795 0.757499283 0.237699119 0.126511598 4.18E-05 2.34E-06 0.125463198 0.030427191 3.04E-11 10.5167773 -0.242517512 GS(ph)PEEELPLPAFEK ddPTM_HeLa_A485_30min_R1 6 GSPEEELPLPAFEK 14 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK ;;;;; 314.06 9.34E-69 2286874000 1482754 1644092 1519293 1684928 2071480 1657592 2145180 1988169 1546059 2162580 TRUE FALSE FALSE 1812587.512 1836354.258 2081342.704 1776971.35 1865236.178 1744380.954 1686844.768 1500567.435 1856338.86 1623488.605 1.116476892 1.131116197 1.282018671 1.094538849 1.148906233 1.07446455 1.039024705 0.924285782 1.143425863 1 20.63066583 -6.382825162 1.645894705 1.018898865 1.162989242 0.440492676 0.06843883 0.340810757 1.838410675 0.030528031 0.025349483 4.14E-07 6.382825162 0.144090378 GS(ph)PEEELPLPAFEK ddPTM_HeLa_A486_30min_R1 6 GSPEEELPLPAFEK 14 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK;GS(1)PEEELPLPAFEK ;;;;; 296.25 5.36E-58 2541750000 1578530 1851710 1325740 651927 1930140 1738410 1989630 2064980 1409570 1787210 TRUE FALSE FALSE 1467883.199 1704973.756 1839102.033 1517719.003 1688043.843 1523942.649 1491803.53 1594829.132 1531752.663 1339680.983 1.095696078 1.272671462 1.372791027 1.132895832 1.260034191 1.137541451 1.113551322 1.190454408 1.143371207 1 20.35345806 -6.315001738 6.765109465 1.12809654 1.232197329 0.291496747 0.084550956 0.348066906 36.34232608 0.029732387 0.026304169 4.84E-07 6.315001738 0.104100789 GS(ph)PETNHLIR ddPTM_HeLa_A485_30min_R1 2 GSPETNHLIR 10 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 GS(0.999)PET(0.001)NHLIR;GS(0.999)PET(0.001)NHLIR ; 197.38 8.27E-14 947490000 140355 237469 233191 157530 262194 205342 209277 220887 176093 204029 TRUE FALSE FALSE 171576.4855 265238.9338 319458.0548 166135.465 236089.0447 216093.3896 164563.2593 166714.1169 211433.2499 153168.3252 1.120182553 1.731682667 2.085666566 1.084659409 1.541369891 1.410822958 1.074394847 1.088437291 1.380398001 1 17.22475846 -6.300143511 1.033907904 1.135059087 1.586733445 0.265407061 0.286604162 0.705968727 1.582550815 0.166354962 0.145251274 5.01E-07 6.300143511 0.451674358 GS(ph)PETNHLIR ddPTM_HeLa_A486_30min_R1 2 GSPETNHLIR 10 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 GS(1)PETNHLIR;GS(1)PETNHLIR ; 232.83 3.59E-18 423690000 273697 276500 261934 105715 354450 245509 293080 256674 234888 294770 TRUE FALSE FALSE 254512.2537 254589.133 363361.8596 246109.8625 309991.5759 215220.5957 219748.2841 198234.9334 255248.281 220957.6734 1.151859765 1.152207702 1.644486268 1.113832612 1.402945511 0.9740354 0.994526602 0.897162476 1.155190843 1 17.75341051 -6.27183804 24.54086159 0.997152168 1.294806786 0.461627291 0.155888838 498.6617854 1176839.227 0.053737626 0.047925429 5.35E-07 6.27183804 0.297654618 GS(ph)PGGPEFLK ddPTM_HeLa_A485_30min_R1 1 GSPGGPEFLK 10 0 Q4VC44-2;Q4VC44;I3L188;Q4VC44-4 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 GS(1)PGGPEFLK 114.71 0.00038636 0 63987 74358 74657 78999 89543 84756 83739 100880 76889 99487 TRUE FALSE FALSE 78220.6874 83053.52127 102275.731 83314.51533 80627.78452 89193.6931 65847.47857 76139.02183 92319.91703 74686.72182 1.047317187 1.11202526 1.369396441 1.115519778 1.079546438 1.194237623 0.881649066 1.019445224 1.23609545 1 16.18856416 -6.692059019 24.99998544 1.035897569 1.155937325 0.201642347 0.115611032 83.39807523 30049.69897 0.045466792 0.035218412 2.03E-07 6.692059019 0.120039756 GS(ph)PGGPEFLK ddPTM_HeLa_A486_30min_R1 2 GSPGGPEFLK 10 0 Q4VC44-2;Q4VC44;I3L188;Q4VC44-4 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 GS(1)PGGPEFLK;GS(1)PGGPEFLK ; 151.98 3.20E-06 305220000 438310 560170 421520 188843 565340 616170 688840 637960 531160 628270 TRUE FALSE FALSE 407586.7324 515780.0891 584743.8327 439636.0476 494429.7856 540153.2102 516484.9462 492710.4346 577201.3765 470947.1026 0.865461811 1.095197499 1.241633783 0.933514709 1.049862676 1.146950915 1.096694179 1.046211839 1.225618277 1 18.8452055 -6.154870373 8.70511572 1.105504079 1.045664691 0.082464708 0.108066385 1.05114195 78.30922671 0.035804214 0.03582567 7.00E-07 6.154870373 -0.059839387 GS(ph)PHS(ph)EGGKRS(ph)PEPNK ddPTM_HeLa_A486_30min_R1 1 GSPHSEGGKRSPEPNK 16 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 3 0 GS(1)PHS(1)EGGKRS(1)PEPNK 78.324 0.0048916 158560000 113750 122500 53648 82809 91561 168710 182680 148330 101270 188930 TRUE FALSE FALSE 105776.7124 112792.6539 74421.94234 192783.5369 80076.56561 147896.2755 136971.5318 114558.497 110048.1651 141620.6983 0.746901503 0.796441871 0.525501874 1.361266674 0.565429818 1.044312571 0.967171702 0.808910692 0.777062721 1 17.11167261 GS(ph)PHSDLKER ddPTM_HeLa_A485_30min_R1 1 GSPHSDLKER 10 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 GS(0.986)PHS(0.014)DLKER 81.494 0.0032493 383650000 110660 158230 160300 113680 269520 206770 244740 300820 162900 184480 TRUE FALSE FALSE 135275.9352 176733.6221 219601.6406 119890.0505 242685.6425 217596.1575 192449.2997 227043.4233 195592.5358 138492.5311 0.976774229 1.276123851 1.585656922 0.865678817 1.752337404 1.571176119 1.389600566 1.639391103 1.412296636 1 17.07944865 -4.359138387 3.089403303 1.42474346 0.949874251 0.185907452 0.264174501 0.456388359 6.937760164 0.065506295 0.457863767 4.37E-05 4.359138387 -0.474869209 GS(ph)PHSDLKER ddPTM_HeLa_A486_30min_R1 2 GSPHSDLKER 10 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 GS(0.901)PHS(0.099)DLKER;GS(0.982)PHS(0.018)DLKER ; 107.17 0.00042934 545850000 512370 481640 427140 254050 807080 481990 669070 706290 339190 574420 TRUE FALSE FALSE 476455.5089 443473.0923 592540.0472 591441.239 705848.5007 422526.9743 501661.6093 545483.1852 368591.2623 430581.4932 1.106539683 1.029939975 1.376139144 1.373587227 1.639291312 0.981293857 1.165079357 1.26685237 0.856031363 1 18.71592679 -7.755798202 24.99653663 0.928015633 1.246050017 0.316311371 0.184781674 155.7859301 690324.3418 0.141071177 0.050000904 1.75E-08 7.755798202 0.318034384 GS(ph)PHSEGGKRSPEPNK ddPTM_HeLa_A486_30min_R1 1 GSPHSEGGKRSPEPNK 16 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GS(0.333)PHS(0.333)EGGKRS(0.333)PEPNK 52.045 0.017703 22448000 38643 46148 44420 3436.2 62933 52147 32260 46661 45585 14175 TRUE FALSE FALSE 35934.32525 42491.06441 61620.61361 7999.647256 55039.35631 45713.63333 24188.20679 36037.3089 49536.3445 10625.48774 3.381898897 3.998975432 5.799320948 0.752873417 5.179936929 4.302262114 2.276432611 3.391591031 4.66203018 1 13.37524145 -10.68979716 2.623268251 0.580525671 3.73345169 0.265005265 1.373450093 45465966.13 37969182.12 126639528.2 0.32909593 2.04E-11 10.68979716 3.152926018 GS(ph)PHYFS(ph)PFRPY ddPTM_HeLa_A485_30min_R1 14 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.019)FS(0.981)PFRPY;GS(1)PHY(0.006)FS(0.994)PFRPY;GS(1)PHY(0.001)FS(0.999)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.004)FS(0.996)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY ;;;;;;;;;;;;; 191.96 2.73E-13 11927315800 1454425.6 2015719 2190069.7 1471372 2222142.9 1720751.4 1981685.4 1828858.4 1768601.8 1804150.8 TRUE FALSE FALSE 1777957.557 2251439.803 3000267.618 1551749.327 2000898.55 1810847.283 1558282.125 1380328.01 2123543.959 1354409.208 1.312718155 1.662303969 2.215185484 1.145701991 1.477322022 1.337001603 1.150525348 1.01913661 1.56787472 1 20.36923226 -5.301399205 24.99245408 1.253194627 1.723293277 0.411863285 0.266742659 504.8597274 315758.1575 0.07519195 0.111529331 5.00E-06 5.301399205 0.47009865 GS(ph)PHYFS(ph)PFRPY ddPTM_HeLa_A486_30min_R1 22 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.001)FS(0.999)PFRPY;GS(0.999)PHY(0.125)FS(0.877)PFRPY;GS(1)PHY(0.037)FS(0.962)PFRPY(0.002);GS(1)PHY(0.001)FS(0.999)PFRPY;GS(1)PHY(0.002)FS(0.998)PFRPY;GS(1)PHYFS(1)PFRPY;GS(0.985)PHY(0.015)FS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.005)FS(0.995)PFRPY;GS(1)PHYFS(1)PFRPY;GS(0.997)PHY(0.013)FS(0.988)PFRPY(0.001);GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.005)FS(0.995)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHY(0.003)FS(0.997)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY;GS(1)PHYFS(1)PFRPY ;;;;;;;;;;;;;;;;;;;;; 186.85 5.54E-13 16691791900 2320872.6 2699533.8 2374163.7 909109.05 2820945.7 2148760.1 2294916.4 2502877.1 1992304.4 2336217.1 TRUE FALSE FALSE 2158191.416 2485612.91 3293503.467 2116451.812 2467116.386 1883667.926 1720704.044 1933026.622 2164998.95 1751213.132 1.232397917 1.419366304 1.880698247 1.208563237 1.408804183 1.075636021 0.982578312 1.103821452 1.236285241 1 20.73992325 -6.050819598 1.779142717 1.077399335 1.477907674 0.46910586 0.184250246 0.320467649 2.036226185 0.072853394 0.077427674 8.90E-07 6.050819598 0.400508339 GS(ph)PHYFSPFRPY ddPTM_HeLa_A485_30min_R1 8 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(0.998)PHY(0.001)FSPFRPY;GS(0.997)PHY(0.003)FSPFRPY;GS(1)PHYFSPFRPY ;;;;;;; 170.56 6.84E-11 1.07E+11 4247608.9 6491594 7130052 3587162.1 6932242 5451372.9 6266160.7 6108272 5832462 5462984.8 TRUE FALSE FALSE 5192474.846 7250729.449 9767754.941 3783119.682 6242043.646 5736798.356 4927344.277 4610208.715 7002983.625 4101163.228 1.266098069 1.767968999 2.381703531 0.922450405 1.522017852 1.398822245 1.201450418 1.12412222 1.707560327 1 21.96760173 -5.277009563 24.95095124 1.286486818 1.801528161 0.350603127 0.334365531 876.5452684 1404646.782 0.093197705 0.138775929 5.28E-06 5.277009563 0.515041343 GS(ph)PHYFSPFRPY ddPTM_HeLa_A486_30min_R1 12 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(0.996)PHY(0.003)FSPFRPY ;;;;;;;;;;; 213.99 1.41E-17 1.02E+11 7680535.7 8908075 8442637 1797846 10253829 6903040.6 8101883.5 8452690 7035885 7279520.4 TRUE FALSE FALSE 7142169.81 8202166.694 11711852.15 4185476.346 8967698.154 6051413.636 6074706.555 6528197.008 7645761.177 5456681.11 1.308885322 1.503142025 2.146332526 0.767037007 1.64343453 1.108991622 1.113260319 1.196367696 1.401174271 1 22.3795923 -5.267628128 24.99710215 1.198035458 1.637822161 0.353955282 0.294051535 569.9660624 2302161.814 0.080186233 0.12237136 5.40E-06 5.267628128 0.439786703 GS(ph)PIDVLHGLIR ddPTM_HeLa_A486_30min_R1 1 GSPIDVLHGLIR 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3 M0QXA7 WIZ Protein Wiz 1 0 GS(1)PIDVLHGLIR 78.548 0.0051863 7608300 8397.1 7500.3 10054 3044.6 10229 6933.1 8438.2 7536 8655.1 6600.7 TRUE FALSE FALSE 7808.506653 6905.948912 13947.17806 7087.982666 8945.983438 6077.764613 6326.87311 5820.21731 9405.331037 4947.841757 1.578164185 1.395749754 2.818840768 1.43254029 1.80805771 1.228366814 1.278713714 1.17631436 1.900895683 1 12.27258365 -6.075765187 2.175963457 1.326036338 1.854019707 0.231951812 0.434306448 0.488376933 4.583649802 0.160115773 0.166677112 8.40E-07 6.075765187 0.527983369 GS(ph)PLAEGPQAFFPER ddPTM_HeLa_A485_30min_R1 3 GSPLAEGPQAFFPER 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER ;; 159.81 6.54E-10 276536000 169290.5 205600.3 171613 151082.5 207314.7 172338.6 207831 177598 136932 214778 TRUE FALSE FALSE 206948.5877 229643.4666 235099.7901 159335.7544 186673.7205 181361.9826 163426.209 134041.812 164412.9964 161237.7973 1.283499224 1.424253311 1.458093537 0.988203493 1.157754098 1.124810594 1.013572573 0.831329963 1.019692647 1 17.29883045 -5.576499711 0.829762863 0.964311404 1.417487093 0.667807495 0.110943598 0.424384939 0.602207551 0.057552232 0.123233487 2.65E-06 5.576499711 0.453175689 GS(ph)PLAEGPQAFFPER ddPTM_HeLa_A486_30min_R1 2 GSPLAEGPQAFFPER 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER ; 174.87 1.48E-12 148742000 97720 110586 103009 29344 122545 95529 101726 115393 89482 95871 TRUE FALSE FALSE 90870.33263 101822.7626 142896.8435 68314.31496 107174.2634 83743.60325 76273.07885 89120.53291 97238.37181 71864.27758 1.264471524 1.416875895 1.988426633 0.950601846 1.491342667 1.165302234 1.061348996 1.240122853 1.35308355 1 16.13298719 -5.284265153 24.98906856 1.197646818 1.542619971 0.360032692 0.228880474 888.6524675 972871.8886 0.063794459 0.094694748 5.20E-06 5.284265153 0.344973152 GS(ph)PMMNR ddPTM_HeLa_A485_30min_R1 2 GSPMMNR 7 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 GS(1)PMMNR;GS(1)PMMNR ; 94.309 0.0058436 386940000 486680 622250 622600 495230 709460 602680 665580 695870 502290 651480 TRUE FALSE FALSE 594940.287 695016.7246 852925.6485 522283.1609 638823.6713 634235.3929 523373.3957 525206.7914 603094.9957 489078.0256 1.216452705 1.421075346 1.743945963 1.067893329 1.30617946 1.296797974 1.070122492 1.07387117 1.23312634 1 18.89970512 -6.10685781 0.861674403 1.095620154 1.423992892 0.345920752 0.169365094 0.701109273 1.140866465 0.103225258 0.113749409 7.82E-07 6.10685781 0.328372738 GS(ph)PMMNR ddPTM_HeLa_A486_30min_R1 2 GSPMMNR 7 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 GS(1)PMMNR;GS(1)PMMNR ; 104.2 0.0027476 237070000 555160 618280 578340 180179 707140 541420 573980 579660 458550 563920 TRUE FALSE FALSE 516246.1508 569285.2411 802288.7365 419465.8177 618443.9074 474625.1052 430364.1331 447684.0719 498297.4832 422710.7615 1.221275155 1.346748872 1.897961466 0.992323489 1.463042732 1.122812922 1.018105457 1.059078956 1.178814283 1 18.68931132 -6.154167255 1.26748741 1.060536281 1.425582259 0.319376811 0.220106294 0.538619273 1.776532703 0.102386702 0.101336919 7.01E-07 6.154167255 0.365045978 GS(ph)PPRPPPPPPLLGT(ph)VSSPS(ph)SSPTHLWTGEVSAAPPPAR ddPTM_HeLa_A486_30min_R1 2 GSPPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 39 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 3 0 GS(1)PPRPPPPPPLLGT(0.682)VS(0.207)S(0.203)PS(0.317)S(0.296)S(0.241)PT(0.053)HLWT(0.001)GEVSAAPPPAR;GS(0.567)PPRPPPPPPLLGT(0.463)VS(0.479)S(0.479)PS(0.551)S(0.154)S(0.146)PT(0.146)HLWT(0.013)GEVS(0.001)AAPPPAR ; 81.83 0.000275 191785000 17246.1 16917.2 14345 5812.6 19983.4 13592.9 14931.5 19549.1 13407.6 16400.4 TRUE FALSE FALSE 16037.23745 15576.61946 19899.76817 13532.02655 17476.89563 11915.9462 11195.48077 15098.19668 14569.78156 12293.63309 1.304515706 1.267047694 1.618705229 1.100734539 1.421621705 0.969277846 0.910673085 1.228131389 1.185148561 1 13.58562371 -6.259805273 24.9993918 1.063656067 1.340242342 0.470745768 0.150445252 143.9322169 2201957.219 0.051629235 0.049059248 5.50E-07 6.259805273 0.276586275 GS(ph)PPRPPPPPPLLGTVS(ph)SPS(ph)SSPTHLWTGEVSAAPPPAR ddPTM_HeLa_A485_30min_R1 1 GSPPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 39 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 3 0 GS(0.993)PPRPPPPPPLLGT(0.102)VS(0.443)S(0.443)PS(0.35)S(0.317)S(0.287)PT(0.064)HLWT(0.001)GEVSAAPPPAR 106.06 6.62E-05 129750000 17825 27841 32189 15819 32876 22921 32553 25550 28381 31116 TRUE FALSE FALSE 21790.10975 31096.76277 44097.0506 16683.15191 29602.75001 24121.10812 25597.78562 19283.82244 34076.80637 23359.35385 0.932821597 1.331233859 1.887768424 0.714195779 1.267276064 1.032610246 1.095825928 0.825528932 1.458807748 1 14.51171275 -5.281214055 24.9972163 1.058499006 1.378670706 0.211014268 0.290233144 1240.020571 1567510.095 0.07998602 0.118823475 5.23E-06 5.281214055 0.3201717 GS(ph)PPRPPPPPPLLGTVSS(ph)PS(ph)SSPTHLWTGEVSAAPPPAR ddPTM_HeLa_A485_30min_R1 1 GSPPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 39 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 3 0 GS(0.999)PPRPPPPPPLLGT(0.04)VS(0.05)S(0.761)PS(0.38)S(0.345)S(0.345)PT(0.075)HLWT(0.004)GEVSAAPPPAR 96.563 0.00011131 150340000 13870 18137 21637 14923 22781 22748 23749 24225 17979 19827 TRUE FALSE FALSE 16955.33365 20257.96438 29641.42669 15738.2057 20512.84365 23939.0501 18674.83214 18283.78077 21587.22039 14884.49379 1.139127329 1.361011309 1.991429948 1.057355791 1.378135121 1.608321415 1.254650135 1.228377735 1.45031606 1 13.86152254 -9.828800857 0.358111025 0.84036095 1.426326212 0.172687793 0.251661299 21.59855636 2.308236963 3.970667898 0.204173694 1.48E-10 9.828800857 0.585965262 GS(ph)PPRPPPPPPLLGTVSS(ph)PS(ph)SSPTHLWTGEVSAAPPPAR ddPTM_HeLa_A486_30min_R1 1 GSPPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 39 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 3 0 GS(1)PPRPPPPPPLLGT(0.075)VS(0.427)S(0.468)PS(0.575)S(0.206)S(0.206)PT(0.043)HLWTGEVSAAPPPAR 96.236 0.00011293 102470000 29062 35607 34252 5986.8 42316 29535 27751 32222 31744 26981 TRUE FALSE FALSE 27024.90388 32785.37164 47515.2917 13937.57296 37008.3327 25891.27199 20807.40628 24885.754 34495.59548 20224.78198 1.336227204 1.621049447 2.349359896 0.689133409 1.829850761 1.280175579 1.028807445 1.230458455 1.705610251 1 14.30383653 -5.261938029 24.99999997 1.27755835 1.75409587 0.267458575 0.39016603 65.28454919 3273136.068 0.106195868 0.168970204 5.47E-06 5.261938029 0.476537521 GS(ph)PPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR ddPTM_HeLa_A485_30min_R1 1 GSPPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 39 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 GS(1)PPRPPPPPPLLGTVSSPSSSPTHLWTGEVSAAPPPAR 259.34 2.93E-65 162090000 8603.8 9151.6 12441 7629.6 10555 8448.8 10775 11706 9263 12429 TRUE FALSE FALSE 10517.68563 10221.80001 17043.44361 8046.385729 9504.107139 8891.166104 8472.833226 8835.085146 11121.99913 9330.679039 1.127215456 1.095504407 1.826602709 0.862358002 1.018586868 0.952895933 0.908061802 0.946885549 1.191981751 1 13.18776636 GS(ph)PPTSSNIVQGQIK ddPTM_HeLa_A485_30min_R1 1 GSPPTSSNIVQGQIK 15 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 GS(0.996)PPT(0.003)S(0.001)SNIVQGQIK 143.14 4.95E-06 0 43501 42874 49480 74770 68869 47173 56077 64543 43859 82512 TRUE FALSE FALSE 53177.64737 47887.74135 67784.71103 78854.49577 62012.16055 49642.90534 44095.69084 48713.72805 52661.099 61943.27692 0.858489412 0.773090216 1.094302956 1.273011369 1.001112044 0.801425236 0.711872104 0.786424782 0.850150357 1 15.91866009 -6.255871207 11.49183472 0.809226861 1.007828721 0.255551421 0.142610196 0.456856874 912.4258295 0.05305501 0.050736489 5.55E-07 6.255871207 0.19860186 GS(ph)PPTSSNIVQGQIK ddPTM_HeLa_A486_30min_R1 1 GSPPTSSNIVQGQIK 15 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 GS(0.997)PPT(0.002)SSNIVQGQIK 162.41 5.45E-08 0 64396 84135 59347 29056 90088 93518 93671 88614 68016 78625 TRUE FALSE FALSE 59882.17294 77467.83619 82327.74777 67643.83641 78788.323 81980.69998 70233.52505 68438.52663 73911.68164 58936.78824 1.016040655 1.314422426 1.396882155 1.147735369 1.336827563 1.39099368 1.191675474 1.161219141 1.254083975 1 15.84688082 -8.67652337 0.72181541 0.995921657 1.264867043 0.292950621 0.113973733 3.076314705 2.289392937 0.150130881 0.041765492 2.11E-09 8.67652337 0.268945386 GS(ph)PQSAAAELSSGLLASAAASSR ddPTM_HeLa_A485_30min_R1 1 GSPQSAAAELSSGLLASAAASSR 23 0 Q12948 Q12948 FOXC1 Forkhead box protein C1 1 0 GS(1)PQSAAAELSSGLLASAAASSR 157.07 3.92E-10 44682000 7004.5 5925 11701 9954 9143.3 8032.4 7740.9 8089.8 8367 10603 TRUE FALSE FALSE 8562.62686 6617.877209 16029.68682 10497.76182 8232.960948 8452.964044 6086.993478 6105.763866 10046.18015 7959.867234 1.075724834 0.831405476 2.01381334 1.318836295 1.034308828 1.061947869 0.764710428 0.767068556 1.262103985 1 12.95852865 -5.842508883 3.864669518 0.953889219 1.326674836 0.212476887 0.309874267 0.35792724 10.33554141 0.103525952 0.121233251 1.44E-06 5.842508883 0.372785617 GS(ph)PQSAAAELSSGLLASAAASSR ddPTM_HeLa_A486_30min_R1 2 GSPQSAAAELSSGLLASAAASSR 23 0 Q12948 Q12948 FOXC1 Forkhead box protein C1 1 0 GS(1)PQSAAAELSSGLLASAAASSR;GS(1)PQSAAAELSSGLLASAAASSR ; 178.35 1.52E-16 90574000 11243.2 16905.1 14996.9 6199.6 18586.5 14191.9 13627.1 14459.3 12308.3 14751.8 TRUE FALSE FALSE 10455.10974 15565.47831 20804.10131 14432.98211 16255.20786 12441.04767 10217.45545 11167.23303 13375.19335 11057.85326 0.945491814 1.407640158 1.881386994 1.305224601 1.470014792 1.125087065 0.923999913 1.009891592 1.209565097 1 13.43278371 -6.362986338 4.149066503 1.035565264 1.423570804 0.378711352 0.223836444 0.253470473 7.619722929 0.084718652 0.074194863 4.34E-07 6.362986338 0.38800554 GS(ph)PRPQAPK ddPTM_HeLa_A485_30min_R1 4 GSPRPQAPK 9 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GS(1)PRPQAPK;GS(1)PRPQAPK;GS(1)PRPQAPK;GS(1)PRPQAPK ;;; 71.524 0.0067505 13477540000 6811600 7788400 7070580 8327080 9579500 8265890 10041290 10887210 7288940 10427690 TRUE FALSE FALSE 8326816.92 8699185.63 9686281.773 8781967.295 8625731.344 8698679.219 7895886.362 8217104.677 8751763.4 7828258.79 1.063686976 1.111254222 1.237348181 1.121828944 1.101871 1.111189532 1.008638903 1.049672079 1.117970628 1 22.90026002 -6.411936841 1.96832425 1.049294968 1.135334117 0.351847075 0.051883538 0.401832654 3.08083171 0.023163285 0.019132236 3.87E-07 6.411936841 0.086039148 GS(ph)PRPQAPK ddPTM_HeLa_A486_30min_R1 5 GSPRPQAPK 9 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GS(1)PRPQAPK;GS(1)PRPQAPK;GS(1)PRPQAPK;GS(1)PRPQAPK;GS(1)PRPQAPK ;;;; 100.55 0.0071137 7925620000 8192480 9339350 6582230 3500990 9634510 9251520 10444620 10193890 7718250 10119840 TRUE FALSE FALSE 7618229.458 8599265.893 9131045.734 8150481.65 8426059.918 8110161.525 7831265.604 7872963.778 8387274.124 7585766.195 1.004279497 1.133605449 1.203707773 1.074444089 1.110772426 1.069128855 1.032363166 1.037860063 1.105659456 1 22.85486348 -6.377787547 2.704716214 1.047029728 1.111518354 0.226614754 0.052787952 0.436386423 6.203710894 0.020998882 0.018079429 4.19E-07 6.377787547 0.064488626 GS(ph)PRY(ph)SPRHS(ph)R ddPTM_HeLa_A486_30min_R1 1 GSPRYSPRHSR 11 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 GS(1)PRY(0.642)S(0.358)PRHS(1)R 88.992 0.0037737 256440000 121660 170600 287000 117510 496970 213850 292300 354070 169520 177820 TRUE FALSE FALSE 113132.2623 157081.0347 398134.0861 273569.2186 434635.3885 187467.3613 219163.4484 273455.9903 184214.1301 133292.7146 0.848750531 1.178466769 2.986915582 2.052394382 3.260758774 1.406433666 1.644226761 2.051544911 1.382026997 1 17.0242384 GS(ph)PRYS(ph)PR ddPTM_HeLa_A485_30min_R1 6 GSPRYSPR 8 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 GS(1)PRY(0.007)S(0.993)PR;GS(1)PRY(0.048)S(0.952)PR;GS(1)PRY(0.048)S(0.952)PR;GS(1)PRY(0.022)S(0.978)PR;GS(1)PRY(0.011)S(0.989)PR;GS(1)PRY(0.012)S(0.988)PR ;;;;; 101.39 0.0022009 9182980000 4310740 6117130 8276110 6062900 9961850 6365510 7814900 7813420 7206950 8111810 TRUE FALSE FALSE 5269649.241 6832475.142 11337787.49 6394100.875 8970013.236 6698798.261 6145182.773 5897166.494 8653318.759 6089685.054 0.865340193 1.121975124 1.861801946 1.049988763 1.472984753 1.100023762 1.009113397 0.968386122 1.420979687 1 22.53793619 -6.460917709 21.12556047 1.090925746 1.286153344 0.089637534 0.276586607 111.8989645 38150.76636 0.09818985 0.086594586 3.46E-07 6.460917709 0.195227598 GS(ph)PRYS(ph)PR ddPTM_HeLa_A486_30min_R1 4 GSPRYSPR 8 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 GS(1)PRY(0.026)S(0.975)PR;GS(1)PRY(0.016)S(0.984)PR;GS(1)PRY(0.022)S(0.978)PR;GS(1)PRY(0.042)S(0.958)PR ;;; 97.911 0.0028602 17862960000 7211170 9286630 9933800 3371043 13201700 8862650 10914450 11724080 8177010 9291500 TRUE FALSE FALSE 6705704.222 8550723.617 13780433.4 7847958.467 11545819.69 7769266.352 8183539.169 9054762.919 8885799.811 6964847.922 0.962792626 1.227697103 1.978569173 1.126795381 1.657727464 1.115496912 1.174977438 1.300066135 1.275806724 1 22.73166042 -6.308373642 24.99742068 1.192130303 1.39965651 0.1326997 0.275380964 952.8600126 507494.988 0.09738018 0.085881393 4.92E-07 6.308373642 0.207526207 GS(ph)PRYS(ph)PRHS(ph)R ddPTM_HeLa_A485_30min_R1 2 GSPRYSPRHSR 11 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 GS(1)PRY(0.198)S(0.803)PRHS(1)R;GS(1)PRY(0.054)S(0.959)PRHS(0.986)R ; 90.385 0.0028409 17050700000 521150 1036920 1412260 719790 2242100 1524220 1830790 2503100 1371630 1185810 TRUE FALSE FALSE 637078.0196 1158178.774 1934713.743 759110.3051 2018868.652 1604025.802 1439626.76 1889210.8 1646903.56 890209.3902 0.715649629 1.301018375 2.173324349 0.852732305 2.267858184 1.801852261 1.617177684 2.122209472 1.850018184 1 19.76378519 -4.453924844 3.667845798 1.741736894 0.75183885 0.318502971 0.447004443 0.262451627 6.427952158 0.107715853 0.51245953 3.52E-05 4.453924844 -0.989898043 GS(ph)PRYS(ph)PRHS(ph)R ddPTM_HeLa_A486_30min_R1 3 GSPRYSPRHSR 11 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 GS(0.999)PRY(0.111)S(0.89)PRHS(1)R;GS(1)PRY(0.184)S(0.817)PRHS(0.999)R;GS(0.997)PRY(0.021)S(0.982)PRHS(1)R ;; 86.005 0.0034771 13923040000 715640 929450 1508760 550840 2435450 1089000 1489670 1836880 956220 856700 TRUE FALSE FALSE 665477.3316 855796.997 2092992.278 1282383.358 2129973.151 954650.2521 1116938.81 1418662.523 1039105.92 642176.7438 1.036283761 1.332650248 3.259215314 1.996932107 3.316802067 1.486584903 1.739301245 2.209146526 1.61809958 1 19.29261089 GS(ph)PSGGSTAEASDTLSIR ddPTM_HeLa_A485_30min_R1 1 GSPSGGSTAEASDTLSIR 18 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GS(0.957)PS(0.043)GGSTAEASDTLSIR 356.74 1.53E-115 197600000 68283 81917 81287 78069 73134 67655 63338 65465 79878 119110 TRUE FALSE FALSE 83472.31778 91496.48057 111358.4439 82333.71179 65852.52217 71197.31119 49805.31888 49409.6061 95908.78192 89418.06906 0.933506154 1.023243753 1.245368471 0.920772643 0.736456545 0.796229576 0.556993898 0.552568476 1.072588381 1 16.44827877 -5.568164523 4.225398999 0.754205499 1.066949418 0.340497862 0.172090447 0.21226376 8.176981513 0.051716188 0.069647517 2.70E-06 5.568164523 0.31274392 GS(ph)PSGGSTAEASDTLSIR ddPTM_HeLa_A486_30min_R1 2 GSPSGGSTAEASDTLSIR 18 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GS(0.882)PS(0.118)GGSTAEASDTLSIR;GS(0.996)PS(0.002)GGS(0.001)T(0.001)AEASDTLSIR ; 239.55 2.71E-45 373720000 139459 124612 108478 53498 173622 136685 151849 148162 102452 141877 TRUE FALSE FALSE 129683.6443 114737.2913 150483.5867 124546.0476 151844.7098 119822.1944 113854.7741 114428.747 111332.6219 106350.0757 1.219403403 1.078864218 1.414983353 1.171095054 1.427781868 1.126677095 1.07056599 1.075963004 1.046850424 1 16.69846154 -6.503495364 15.45463855 1.060947135 1.257791788 0.509294917 0.099419391 4.984560055 3974.69029 0.034940602 0.029992114 3.14E-07 6.503495364 0.196844654 GS(ph)PSPASVSSGR ddPTM_HeLa_A485_30min_R1 3 GSPSPASVSSGR 12 0 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GS(0.954)PS(0.045)PAS(0.001)VSSGR;GS(0.678)PS(0.32)PAS(0.002)VSSGR;GS(0.835)PS(0.165)PASVSSGR ;; 143.31 2.20E-07 1313090000 815249 1096723 1238620 664095 951102 1103840 837726 1031164 1143713 982620 TRUE FALSE FALSE 996598.3275 1224975.215 1696837.081 700372.8283 856406.9454 1161635.356 658738.9965 778269.4122 1373245.708 737670.9178 1.351006666 1.660598493 2.30026295 0.949438037 1.1609607 1.574733838 0.892998464 1.055036051 1.861596649 1 19.49261783 -5.280783665 24.95173111 1.215334183 1.759620388 0.33979554 0.355740123 898.2136039 1158582.073 0.100126846 0.14876255 5.24E-06 5.280783665 0.544286205 GS(ph)PSPASVSSGR ddPTM_HeLa_A486_30min_R1 4 GSPSPASVSSGR 12 0 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GS(0.632)PS(0.367)PAS(0.001)VSSGR;GS(0.942)PS(0.058)PASVSSGR;GS(0.995)PS(0.005)PASVSSGR;GS(0.969)PS(0.031)PASVSSGR ;;; 277.1 9.85E-41 2785950000 1408620 1874780 2082307 378187 2262970 1543063 1266040 1370305 1702443 1279234 TRUE FALSE FALSE 1309883.012 1726215.605 2888632.037 880438.4485 1979127.201 1352695.576 949263.4012 1058316.465 1850012.13 958905.48 1.366018903 1.800193701 3.012426247 0.918170213 2.063943989 1.410666227 0.989944704 1.103671308 1.929295607 1 19.87102909 -6.160296649 1.394391507 1.259179343 1.905234337 0.176743095 0.564902188 0.72502811 2.855914803 0.252160949 0.247574761 6.91E-07 6.160296649 0.646054994 GS(ph)PSPASVSSGRK ddPTM_HeLa_A485_30min_R1 4 GSPSPASVSSGRK 13 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GS(0.976)PS(0.023)PASVSSGRK;GS(0.973)PS(0.025)PAS(0.001)VSSGRK;GS(0.988)PS(0.012)PASVSSGRK;GS(0.944)PS(0.048)PAS(0.008)VSSGRK ;;; 116.87 1.00E-04 1854370000 1721570 2364230 1902330 1688730 2139140 2519260 2780360 2920180 1924570 2559720 TRUE FALSE FALSE 2104527.307 2640706.132 2606081.03 1780981.044 1926159.711 2651164.558 2186313.373 2204001.276 2310813.546 1921628.912 1.095178832 1.374201916 1.356183295 0.926807997 1.002357791 1.379644395 1.137739633 1.146944273 1.202528507 1 20.87389833 -14 0.193873057 0.224884385 1.21255678 0.115608685 0.146920526 334.7255463 3.289702658 100.7741593 0.405575352 1.00E-14 14 0.987672395 GS(ph)PSPASVSSGRK ddPTM_HeLa_A486_30min_R1 4 GSPSPASVSSGRK 13 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GS(0.839)PS(0.146)PAS(0.014)VSSGRK;GS(0.926)PS(0.052)PAS(0.021)VSSGRK;GS(0.958)PS(0.042)PASVSSGRK;GS(0.977)PS(0.023)PASVSSGRK ;;; 73.262 0.0053776 1549170000 2347200 2185060 1492320 823860 2204080 1923660 2276640 2234330 1685820 3014190 TRUE FALSE FALSE 2182673.401 2011907.888 2070186.27 1917987.716 1927623.734 1686338.388 1707000.592 1725621.834 1831948.235 2259417.205 0.966033806 0.890454354 0.9162479 0.848886036 0.853150861 0.746359895 0.755504822 0.763746434 0.81080565 1 21.10751926 -5.45698881 1.373002826 0.799258105 0.930796257 0.278108415 0.071281269 0.477147097 1.803275269 0.024112988 0.046385777 3.49E-06 5.45698881 0.131538152 GS(ph)PTGGAQLLK ddPTM_HeLa_A485_30min_R1 3 GSPTGGAQLLK 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 GS(0.565)PT(0.435)GGAQLLK;GS(0.984)PT(0.016)GGAQLLK;GS(0.996)PT(0.004)GGAQLLK ;; 168.31 4.33E-08 3622160000 1029270 990570 968530 1345580 1373500 953380 1192400 1094660 1107950 1779770 TRUE FALSE FALSE 1258227.561 1106408.545 1326829.551 1419085.628 1236749.517 1003297.503 937633.999 826192.9186 1330305.402 1336106.093 0.941712314 0.828084349 0.993057032 1.062105499 0.925637211 0.750911554 0.701766128 0.618358769 0.99565851 1 20.34960314 -6.187385149 5.413106514 0.782738979 0.95398141 0.213204133 0.12518074 0.289142137 15.43231282 0.041811355 0.041652209 6.50E-07 6.187385149 0.171242432 GS(ph)PTGGAQLLK ddPTM_HeLa_A486_30min_R1 1 GSPTGGAQLLK 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 GS(1)PTGGAQLLK 148.62 7.42E-07 2005500000 1118300 1441400 945460 415580 1257500 1296600 1506300 1443800 1148300 1325800 TRUE FALSE FALSE 1039912.945 1327178.215 1311567.432 967491.2423 1099772.624 1136638.675 1129407.808 1115078.258 1247835.569 993811.0505 1.046388994 1.335443205 1.319735207 0.973516285 1.106621449 1.143717082 1.136441185 1.122022398 1.255606454 1 19.92261206 -11.43259887 1.83678729 8.55E-05 1.160469835 0.16297551 0.108735538 1781026.562 130241.6184 7405050.67 0.02831111 3.69E-12 11.43259887 1.160384328 GS(ph)PTGGAQLLKR ddPTM_HeLa_A485_30min_R1 4 GSPTGGAQLLKR 12 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 GS(0.863)PT(0.137)GGAQLLKR;GS(0.773)PT(0.227)GGAQLLKR;GS(0.884)PT(0.116)GGAQLLKR;GS(0.845)PT(0.155)GGAQLLKR ;;; 171.21 7.59E-11 2130680000 1982890 2736080 2332300 2114120 3240360 2818760 3488360 3640790 2415940 2732120 TRUE FALSE FALSE 2423977.04 3056040.755 3195114.825 2229609.022 2917738.381 2966345.915 2743043.389 2747880.544 2900796.998 2051052.765 1.181820907 1.489986415 1.557792603 1.087055906 1.42255647 1.446255292 1.337383141 1.339741518 1.414296622 1 20.96793318 -10.21742885 4.399303558 0.999867484 1.36798347 0.401739898 0.133218845 0.000170023 3.02E-05 0.126429265 0.030652599 6.06E-11 10.21742885 0.368115986 GS(ph)PTGGAQLLKR ddPTM_HeLa_A486_30min_R1 4 GSPTGGAQLLKR 12 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 GS(0.935)PT(0.065)GGAQLLKR;GS(0.956)PT(0.044)GGAQLLKR;GS(0.994)PT(0.006)GGAQLLKR;GS(0.987)PT(0.013)GGAQLLKR ;;; 116.06 0.00014769 2572780000 3280260 3057060 2502810 1272920 3993980 2867470 3751840 3701480 2370410 3653320 TRUE FALSE FALSE 3050330.713 2814807.432 3471965.06 2963422.09 3493017.786 2513710.706 2813089.949 2858733.807 2575879.047 2738504.893 1.113867177 1.027862846 1.267832337 1.082131384 1.275520009 0.917913535 1.027235685 1.043903122 0.940615098 1 21.38495703 -6.273675112 24.99933353 0.991258821 1.148859328 0.527547741 0.079120936 656.9867602 1342313.168 0.027115739 0.024086935 5.33E-07 6.273675112 0.157600507 GS(ph)PTRPNPPVR ddPTM_HeLa_A485_30min_R1 4 GSPTRPNPPVR 11 1 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GS(0.848)PT(0.152)RPNPPVR;GS(0.992)PT(0.008)RPNPPVR;GS(0.991)PT(0.009)RPNPPVR;GS(0.657)PT(0.343)RPNPPVR ;;; 128.35 2.45E-05 13006990000 458102 658721 565998 483213 636057 578712 645935 726995 576915 650436 TRUE FALSE FALSE 560005.2095 735752.6908 775384.2133 509609.7026 572728.9317 609012.4655 507925.7104 548698.3364 692696.5487 488294.2756 1.146860075 1.506781315 1.587944508 1.04365283 1.172917563 1.247224258 1.040204106 1.123704216 1.418604689 1 18.89739134 -5.268453049 24.96890733 1.15512388 1.423153903 0.379336076 0.15472298 541.7257445 1928562.494 0.042997501 0.065345429 5.39E-06 5.268453049 0.268030024 GS(ph)PTRPNPPVR ddPTM_HeLa_A486_30min_R1 6 GSPTRPNPPVR 11 1 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GS(0.996)PT(0.004)RPNPPVR;GS(0.974)PT(0.026)RPNPPVR;GS(0.929)PT(0.071)RPNPPVR;GS(0.844)PT(0.156)RPNPPVR;GS(0.988)PT(0.012)RPNPPVR;GS(0.996)PT(0.004)RPNPPVR ;;;;; 95.631 0.0003096 88448940000 561793 645009 572578 234054 683378 599101 673125 692951 553799 730351 TRUE FALSE FALSE 522414.2118 593896.1378 794295.5358 544889.5404 597662.359 525190.0098 504702.0054 535181.1843 601802.7432 547466.3558 0.954239847 1.084808466 1.450857258 0.995293199 1.091687832 0.95931011 0.921886797 0.977559952 1.099250642 1 19.06241078 GS(ph)PTSAYPER ddPTM_HeLa_A485_30min_R1 1 GSPTSAYPER 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 GS(0.593)PT(0.145)S(0.261)AYPER 77.062 0.009516 337840000 145920 173710 191530 121400 171130 137080 190650 163000 174890 211060 TRUE FALSE FALSE 178379.4006 194023.8734 262384.9172 128031.7746 154091.6963 144257.2968 149916.07 123023.9944 209988.8188 158446.6263 1.125801191 1.224537739 1.655982986 0.808043551 0.972514846 0.910447261 0.946161326 0.776438081 1.325296876 1 17.27363742 -5.280778261 24.99930759 0.950927802 1.3243504 0.45003421 0.188391851 692.9409896 895760.9835 0.051758319 0.076900596 5.24E-06 5.280778261 0.373422599 GS(ph)PTSAYPER ddPTM_HeLa_A486_30min_R1 1 GSPTSAYPER 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 GS(0.844)PT(0.121)S(0.036)AYPER 94.465 0.0025615 256980000 213720 223900 228660 62481 244060 213630 199890 223050 232570 221090 TRUE FALSE FALSE 198739.3317 206157.3486 317203.2757 145458.9256 213447.719 187274.5026 149875.4078 172266.3841 252729.3549 165727.6249 1.199192541 1.243952833 1.91400363 0.877698728 1.287942907 1.130013796 0.904347768 1.039454854 1.524968182 1 17.33845458 -5.297549227 24.99512349 1.11062662 1.431540831 0.2777958 0.252893573 786.3006564 544273.2762 0.070858622 0.105104418 5.04E-06 5.297549227 0.320914212 GS(ph)PVFLPR ddPTM_HeLa_A485_30min_R1 2 GSPVFLPR 8 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 GS(1)PVFLPR;GS(1)PVFLPR ; 105.4 0.0014359 306860000 196029 226790 245616 202482 254139 210370 230052 232461 229983 270550 TRUE FALSE FALSE 239634.9748 253311.1177 336479.5793 213543.0789 228836.0288 221384.6479 180899.5108 175449.5753 276138.4786 203106.8641 1.179846756 1.247181472 1.656662766 1.051382876 1.126677967 1.08999097 0.890661729 0.863828882 1.35957236 1 17.63187947 -5.452468441 24.92073988 1.046124134 1.350525867 0.396168333 0.173124749 158.3160483 56033.12345 0.049044934 0.072745369 3.53E-06 5.452468441 0.304401733 GS(ph)PVFLPR ddPTM_HeLa_A486_30min_R1 2 GSPVFLPR 8 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 GS(1)PVFLPR;GS(1)PVFLPR ; 107.15 0.0013564 1137360000 1111130 1104860 820430 392241 1159990 945060 1254370 1238440 882400 1187770 TRUE FALSE FALSE 1033245.525 1017306.87 1138122.468 913156.8708 1014493.238 828468.1059 940513.3586 956474.247 958887.1425 890344.6609 1.160500613 1.142598944 1.278294258 1.025621774 1.139438784 0.930502694 1.056347502 1.074274142 1.076984211 1 19.7640044 -5.279974626 24.77395234 1.046252928 1.188678044 0.558884738 0.061177222 529.9184714 708280.5242 0.017035337 0.025321673 5.25E-06 5.279974626 0.142425116 GS(ph)PVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GSPVSPR 7 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 GS(1)PVS(1)PR 82.749 0.021676 163660000 166850 231430 216890 187750 187600 172270 179270 175570 219800 247730 TRUE FALSE FALSE 203965.2069 258493.7253 297126.6365 198006.3071 168921.8853 181289.7908 140967.5 132511.1822 263911.8439 185975.4701 1.096731772 1.389934517 1.597665737 1.064690451 0.908301967 0.974804853 0.757989749 0.712519679 1.419068029 1 17.50475282 -5.460859302 5.959902639 0.941682712 1.36311401 0.414910586 0.211386418 0.204065672 14.64453486 0.060184594 0.088825974 3.46E-06 5.460859302 0.421431298 GS(ph)PVSPR ddPTM_HeLa_A486_30min_R1 1 GSPVSPR 7 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 GS(0.999)PVS(0.001)PR 69.716 0.021384 102390000 141300 123200 153920 46440 122440 145270 108070 96886 148120 151910 TRUE FALSE FALSE 131395.5997 113437.1833 213521.9461 108114.6669 107082.4335 127348.0644 81029.74295 74827.17281 160959.1609 113870.7472 1.153901268 0.996192491 1.875125538 0.949450755 0.940385798 1.118356272 0.711594021 0.657123753 1.413525113 1 16.79703765 -5.426519561 24.97303092 0.949827685 1.324704631 0.256855813 0.287839374 66.29415944 17174.98464 0.080428255 0.119294358 3.75E-06 5.426519561 0.374876946 GS(ph)PVTTREPTPR ddPTM_HeLa_A485_30min_R1 2 GSPVTTREPTPR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GS(0.999)PVT(0.001)TREPTPR;GS(0.998)PVT(0.001)TREPTPR ; 92.939 0.00090147 435150000 267180 385980 351700 286520 406560 361690 393050 446390 354080 325680 TRUE FALSE FALSE 326613.2692 431117.0034 481808.4655 302171.8621 366081.4589 380627.5291 309071.6566 336912.1526 425140.6082 244493.9697 1.33587454 1.763303217 1.970635374 1.235907219 1.49730261 1.556797207 1.264127933 1.377997801 1.73885928 1 17.89943936 -5.27447438 24.94019728 1.404550077 1.697274284 0.257133149 0.237858237 1033.774845 1977945.662 0.065525542 0.097860582 5.32E-06 5.27447438 0.292724206 GS(ph)PVTTREPTPR ddPTM_HeLa_A486_30min_R1 3 GSPVTTREPTPR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GS(0.95)PVT(0.038)T(0.009)REPT(0.003)PR;GS(0.976)PVT(0.023)T(0.001)REPTPR;GS(0.999)PVTTREPTPR ;; 94.017 0.00084399 312380000 355292 348587 328286 141558 442020 328268 383575 402632 310851 370651 TRUE FALSE FALSE 330387.8655 320963.6966 455407.131 329554.1779 386577.7299 287769.6317 287600.478 310961.483 337795.815 277837.5771 1.189140321 1.155220615 1.639112808 1.186139691 1.391380295 1.035747701 1.035138879 1.119220396 1.215803199 1 18.08388221 -6.265538693 24.86295752 1.085755607 1.314636352 0.400761849 0.141172866 359.0008819 2177385.687 0.04917914 0.044978391 5.43E-07 6.265538693 0.228880745 GS(ph)SDGRGS(ph)DS(ph)ESDLPHR ddPTM_HeLa_A485_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 3 0 GS(0.5)S(0.5)DGRGS(1)DS(0.527)ES(0.473)DLPHR 98.766 0.0009523 1610800000 391360 552740 575370 405920 709230 544160 570150 618710 521640 528840 TRUE FALSE FALSE 478416.6818 617378.1348 788223.3061 428094.3818 638616.5709 572651.3762 448332.7948 466970.4024 626328.3632 397009.9206 1.20504969 1.555069792 1.985399521 1.078296434 1.608565776 1.442410747 1.129273531 1.176218473 1.577613885 1 18.59881553 -6.629396056 6.024347631 1.236965856 1.498020705 0.18514899 0.265119703 0.381142987 19.01497981 0.101695624 0.078185635 2.35E-07 6.629396056 0.261054848 GS(ph)SDGRGS(ph)DS(ph)ESDLPHR ddPTM_HeLa_A486_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 3 0 GS(0.5)S(0.5)DGRGS(1)DS(0.5)ES(0.5)DLPHR 77.675 0.0088697 1307300000 473740 644040 552350 61818 680490 431250 477290 454040 575440 315200 TRUE FALSE FALSE 440533.2724 593003.9248 766234.7124 143915.4281 595136.5989 378046.7596 357866.9937 350665.0036 625319.6025 236271.8684 1.864518512 2.509837201 3.243021345 0.609109451 2.518863557 1.600049816 1.514640724 1.484158931 2.646610478 1 17.85008834 -5.245903406 24.99877941 1.676583764 2.536196727 0.289231966 0.653315617 1093.009773 1758748.644 0.170353248 0.293744036 5.68E-06 5.245903406 0.859612963 GS(ph)SFQSGRDDTWR ddPTM_HeLa_A485_30min_R1 1 GSSFQSGRDDTWR 13 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 GS(0.5)S(0.5)FQSGRDDTWR 124.29 5.55E-05 0 202170 299270 212860 91480 311940 293810 343930 529360 225130 165540 TRUE FALSE FALSE 247142.019 334267.0232 291605.7718 96477.32076 280882.1583 309193.4373 270446.5459 399533.63 270311.526 124273.9245 1.988687651 2.689759935 2.346475923 0.776327947 2.26018579 2.4879993 2.176213126 3.214943372 2.175126657 1 16.92316409 -5.979485766 24.99369763 2.350122213 1.967281808 0.01605506 0.688129033 754.8046465 919618.14 0.214236605 0.242899703 1.05E-06 5.979485766 -0.382840405 GS(ph)SGEGLPFAEEGNLTIK ddPTM_HeLa_A485_30min_R1 2 GSSGEGLPFAEEGNLTIK 18 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 GS(0.5)S(0.5)GEGLPFAEEGNLTIK;GS(0.5)S(0.5)GEGLPFAEEGNLTIK ; 149 6.05E-11 0 126803 116791 110671 134540 153365 134511 150996 142974 117426 197795 TRUE FALSE FALSE 155009.8899 130448.6915 151612.8083 141889.5795 138095.4421 141553.788 118734.4711 107909.4023 140992.3211 148488.3466 1.043919563 0.878511307 1.021041797 0.95556037 0.930008618 0.95329897 0.799621477 0.72671967 0.949517752 1 17.17999019 -6.71219192 9.436194164 0.846272687 0.960742189 0.219564912 0.083126807 0.428515078 78.05677764 0.030518898 0.023553355 1.94E-07 6.71219192 0.114469502 GS(ph)SGEGLPFAEEGNLTIK ddPTM_HeLa_A486_30min_R1 2 GSSGEGLPFAEEGNLTIK 18 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 GS(0.5)S(0.5)GEGLPFAEEGNLTIK;GS(0.5)S(0.5)GEGLPFAEEGNLTIK ; 190.18 4.30E-18 78802000 166826 171530 112877 65718 146100 160803 165153 177222 151389 183203 TRUE FALSE FALSE 155132.3589 157937.3381 156585.9974 152994.8252 127774.7757 140964.7608 123829.9726 136872.4193 164511.5204 137327.7763 1.129650265 1.150075697 1.140235439 1.114085069 0.930436501 1.026483968 0.901711044 0.996684159 1.197947894 1 17.06726393 -5.621522436 6.761286584 1.00456173 1.138697913 0.409199216 0.073691095 0.215783836 12.70874572 0.022237504 0.028766587 2.39E-06 5.621522436 0.134136183 GS(ph)SGSPAHAESYSSGGGGQQK ddPTM_HeLa_A486_30min_R1 1 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.357)S(0.357)GS(0.287)PAHAESYSSGGGGQQK 141.36 6.65E-09 94788000 88462 90860 69004 3172 89704 73510 82033 78572 72216 55764 TRUE FALSE FALSE 82261.27062 83659.92269 95724.19679 7384.576304 78452.48786 64441.08359 61507.47574 60682.87081 78475.74103 41800.33144 1.967957377 2.001417688 2.290034397 0.176663104 1.876838895 1.541640494 1.471459044 1.45173181 1.877395186 1 15.35122676 GS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 1 GSSGSVDETLFALPAASEPVIR 22 0 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 GS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR 82.482 0.0031214 15082000 9766.3 11302 14534 10587 13783 9718.8 13770 14362 13474 17707 TRUE FALSE FALSE 11938.77974 12623.67059 19910.73141 11165.341 12410.71612 10227.66134 10827.92701 10839.69698 16178.10821 13292.97077 0.898127284 0.949650067 1.497839102 0.839943245 0.933629987 0.769403733 0.814560356 0.815445785 1.217042337 1 13.69837594 GS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_A486_30min_R1 1 GSSGSVDETLFALPAASEPVIR 22 0 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 GS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR 61.648 0.018161 19596000 11823 16547 19304 4282.7 15478 14187 17112 15256 11733 11722 TRUE FALSE FALSE 10994.26875 15235.75546 26779.02578 9970.342036 13536.60491 12436.75218 12830.39661 11782.54184 12750.02589 8786.734903 1.25123483 1.733949599 3.047665154 1.134703863 1.540572814 1.415400865 1.460200717 1.340946548 1.451053893 1 13.10111145 GS(ph)SLKIEER ddPTM_HeLa_A485_30min_R1 1 GSSLKIEER 9 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 GS(0.597)S(0.403)LKIEER 120.57 0.00021106 285560000 225140 257090 247690 325700 420900 345630 454360 539110 372810 646720 TRUE FALSE FALSE 275221.6163 287154.4391 339320.8382 343492.1663 378993.7181 363726.6524 357282.2742 406892.4272 447629.5474 485504.606 0.566877457 0.591455643 0.698903438 0.707495175 0.780618172 0.749172403 0.735898836 0.838081497 0.921988261 1 18.88912546 -3.820479291 0.125970756 1.126348918 1.49E-14 0.919925759 0.036154739 11.60754451 0.210469175 0.323682049 2.247143514 0.000151189 3.820479291 -1.126348918 GS(ph)SLKIEER ddPTM_HeLa_A486_30min_R1 2 GSSLKIEER 9 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 GS(0.604)S(0.396)LKIEER;GS(0.5)S(0.5)LKIEER ; 131.17 0.0001133 822010000 877480 953490 653700 688660 1100530 1272300 1650780 1883160 955410 1799100 TRUE FALSE FALSE 815973.1833 877931.9798 906830.1467 1603235.283 962491.2654 1115336.562 1237737.384 1454405.577 1038225.708 1348593.65 0.605054891 0.650998156 0.672426529 1.188820134 0.713699983 0.827036789 0.917798615 1.078460941 0.769858073 1 20.36302428 -5.034523291 24.19527519 0.918664163 0.636447879 0.489163965 0.133746738 331.5232275 232344.3639 0.035456917 0.061462518 9.24E-06 5.034523291 -0.282216285 GS(ph)SPDVHALLEITEESDAVLVDK ddPTM_HeLa_A485_30min_R1 3 GSSPDVHALLEITEESDAVLVDK 23 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 GS(0.5)S(0.5)PDVHALLEITEESDAVLVDK;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDK;GS(0.499)S(0.499)PDVHALLEIT(0.001)EESDAVLVDK ;; 168.65 1.39E-14 83740000 49175 43154 32758.9 47813 40565 35332 47432 39241 35468.7 61822 TRUE FALSE FALSE 60113.8091 48200.48491 44877.78032 50424.90312 36526.20617 37181.92889 37297.76572 29617.08322 42586.94275 46410.91315 1.295251591 1.038559288 0.966966114 1.086488063 0.787017615 0.801146247 0.803642143 0.638149117 0.917606224 1 15.50217646 -3.935409706 0.561827552 0.802561371 1.752798044 0.598792337 0.112271136 3.539879273 0.6551288 0.058952565 2.373255054 0.000116035 3.935409706 0.950236672 GS(ph)SPDVHALLEITEESDAVLVDK ddPTM_HeLa_A486_30min_R1 4 GSSPDVHALLEITEESDAVLVDK 23 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 GS(0.5)S(0.5)PDVHALLEITEESDAVLVDK;GS(0.497)S(0.497)PDVHALLEIT(0.006)EESDAVLVDK;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDK;GS(0.5)S(0.5)PDVHALLEIT(0.001)EESDAVLVDK ;;; 195.3 7.62E-22 154935000 102358 106505 70547 42941.7 79348 109012 114085 88476 88643 87648 TRUE FALSE FALSE 95183.23278 98065.15592 97864.68771 99970.44775 69395.43395 95563.20779 85539.72633 68331.94622 96326.64661 65700.37031 1.44874728 1.492611921 1.489560672 1.521611633 1.056241139 1.454530733 1.301967187 1.040054202 1.466150741 1 16.00361388 -1.000000062 0.043967207 0.204460082 3.26682553 0.407824081 0.154937507 602.3813169 2.014674823 36.2269844 131.8578313 0.099999986 1.000000062 3.062365447 GS(ph)SPDVHALLEITEESDAVLVDKSDSD ddPTM_HeLa_A485_30min_R1 6 GSSPDVHALLEITEESDAVLVDKSDSD 27 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.464)S(0.464)PDVHALLEIT(0.071)EES(0.002)DAVLVDKSDSD ;;;;; 216.69 2.17E-38 345785000 162717 175085 128177.2 171082.3 234925 170833 253834 269018 177618 279870 TRUE FALSE FALSE 198912.8353 195559.6677 175595.2802 180428.0928 211535.0421 179777.5517 199600.2923 203040.9137 213264.3034 210103.5596 0.946737103 0.930777508 0.835755855 0.858757906 1.006813223 0.855661618 0.950009094 0.96638493 1.015043742 1 17.68074108 -7.279148277 1.803587523 1.005607367 0.905942425 0.404346727 0.04825139 0.39182512 2.336421132 0.037558486 0.014676143 5.26E-08 7.279148277 -0.099664942 GS(ph)SPDVHALLEITEESDAVLVDKSDSD ddPTM_HeLa_A486_30min_R1 6 GSSPDVHALLEITEESDAVLVDKSDSD 27 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 GS(0.494)S(0.494)PDVHALLEIT(0.011)EESDAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.459)S(0.459)PDVHALLEIT(0.07)EES(0.012)DAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;GS(0.493)S(0.493)PDVHALLEIT(0.013)EES(0.001)DAVLVDKSDSD ;;;;; 164.66 4.87E-14 234194000 120636.6 119497.4 80187.4 82516.9 131761.6 139246.2 168233 145064.2 97184.6 124889.4 TRUE FALSE FALSE 112180.5973 110027.9908 111238.1088 192103.5134 115234.8315 122067.4196 126139.324 112036.2484 105608.6394 93616.28135 1.198302215 1.175308282 1.188234644 2.052031021 1.230927247 1.303912288 1.347407974 1.196760294 1.128101201 1 16.51447184 -7.641228666 1.137033443 1.006732955 1.372281838 0.200862242 0.242845482 0.803785232 2.002046301 0.237243302 0.080449236 2.28E-08 7.641228666 0.365548883 GS(ph)SPLGPAGLGAEEPAAGPQLPSWLQPER ddPTM_HeLa_A485_30min_R1 1 GSSPLGPAGLGAEEPAAGPQLPSWLQPER 29 0 H0YKL4;O43482 H0YKL4 OIP5 Protein yippee-like;Protein Mis18-beta 1 0 GS(0.5)S(0.5)PLGPAGLGAEEPAAGPQLPSWLQPER 116.28 8.39E-05 39397000 22504 34887 44408 15345 42550 33351 32014 38448 35626 24553 TRUE FALSE FALSE 27509.93716 38966.73117 60836.36717 16183.25849 38313.5726 35097.20679 25173.94737 29018.56772 42775.81142 18432.38896 1.492478116 2.114035856 3.300514507 0.877979437 2.078600483 1.904105152 1.365745233 1.574324835 2.320687324 1 14.16995545 -5.276121756 24.99656885 1.636962694 2.283512278 0.232021581 0.590076227 1249.434893 2127144.814 0.16430196 0.244862368 5.30E-06 5.276121756 0.646549583 GS(ph)SPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_HeLa_A485_30min_R1 2 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 0 GS(0.571)S(0.429)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK;GS(0.496)S(0.496)PQNT(0.006)T(0.001)T(0.001)PKPSVEGQQPAAAAACEPVDHAQSESILK ; 384.16 3.66E-195 2131360000 217496 161185 132149 227939 291568 198378 294315 322608 225168 378189 TRUE FALSE FALSE 265877.2348 180034.1836 181036.4143 240390.7304 262538.4662 208764.7653 231432.1959 243487.8822 270357.1522 283913.4424 0.936472865 0.634116448 0.637646505 0.846704293 0.924713053 0.73531131 0.81515054 0.857613081 0.952252031 1 18.11509163 -7.636220056 0.523175112 1.011456258 0.756394274 0.356250689 0.098132092 0.973267643 0.660678585 0.108695356 0.060020111 2.31E-08 7.636220056 -0.255061984 GS(ph)SPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_HeLa_A486_30min_R1 1 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 0 GS(0.5)S(0.5)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 180.11 2.46E-21 2056700000 28661 36462 19289 8318.7 32216 32142 38579 42099 27748 35510 TRUE FALSE FALSE 26652.01191 33572.61833 26758.21738 19366.354 28175.16888 28176.64684 28926.12615 32513.97671 30153.21898 26618.06487 1.001275338 1.26127194 1.005265315 0.72756431 1.058498017 1.058553542 1.086710334 1.221500394 1.132810335 1 14.70011807 -6.667845617 2.207479099 1.132995817 1.011239553 0.109585463 0.131075668 0.683155104 6.797548183 0.065593479 0.045777846 2.15E-07 6.667845617 -0.121756264 GS(ph)SPSHSATSVHTSV ddPTM_HeLa_A485_30min_R1 1 GSSPSHSATSVHTSV 15 0 F8WA39;Q13613 F8WA39 MTMR1 Myotubularin-related protein 1 1 0 GS(0.424)S(0.424)PS(0.152)HSATSVHTSV 86.803 0.00086355 0 90966 249410 317750 56905 245510 166240 111980 201240 208180 68378 TRUE FALSE FALSE 111201.0729 278576.3299 435298.9477 60013.57606 221066.1624 174944.0693 88054.55821 151885.5745 249959.8165 51332.623 2.166284642 5.426886717 8.479966972 1.169111815 4.306543275 3.40804851 1.715372273 2.958850836 4.869414455 1 15.64758836 -5.283497326 24.98778514 2.902951735 5.36463125 0.289607144 1.845851756 1023.271235 1159184.631 0.518694753 0.770056193 5.21E-06 5.283497326 2.461679516 GS(ph)SSQGPSQTSTPTDVTAIHL ddPTM_HeLa_A485_30min_R1 1 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 0 GS(0.481)S(0.481)S(0.037)QGPSQTSTPTDVTAIHL 104.35 0.00012833 60982000 37197 45533 41729 45807 55452 44557 61144 63292 45884 63114 TRUE FALSE FALSE 45471.34432 50857.68827 57166.29359 48309.32042 49931.00418 46889.93562 48080.0849 47769.53776 55092.49793 47380.84133 0.959698964 1.073380861 1.206527617 1.019596087 1.053822659 0.989639152 1.014757939 1.008203663 1.162758963 1 15.5320162 GS(ph)YGDLGGPIITTQVTIPK ddPTM_HeLa_A485_30min_R1 4 GSYGDLGGPIITTQVTIPK 19 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK ;;; 351.47 1.18E-115 2208000000 317240 256848 290458 421012 345463 292791 397491 343149 255962 505277 TRUE FALSE FALSE 387808.9435 286884.1393 397910.5012 444010.8195 311067.4907 308121.084 312563.8006 258991.1697 307331.2256 379320.7428 1.02237737 0.75631018 1.049008019 1.170541891 0.820064541 0.812296954 0.82400925 0.682776185 0.810214657 1 18.53305874 -5.955673492 24.99826727 0.807057502 0.986915096 0.328195298 0.120419253 157.5268218 88837.70918 0.038166955 0.043277237 1.11E-06 5.955673492 0.179857594 GS(ph)YGDLGGPIITTQVTIPK ddPTM_HeLa_A486_30min_R1 4 GSYGDLGGPIITTQVTIPK 19 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK ;;; 329.64 7.81E-102 2586890000 720701 1011070 643972 290782 748427 879370 967425 906976 832157 896060 TRUE FALSE FALSE 670183.5816 930949.1309 893335.2046 676955.1913 654552.3069 770882.2702 725365.0326 700477.3639 904289.0388 671680.7436 0.997771021 1.385999435 1.329999725 1.007852611 0.97449914 1.147691485 1.079925306 1.042872482 1.346307822 1 19.35741614 -5.261443493 25 1.085101456 1.252730999 0.203511016 0.137162097 0.54717813 3317970.65 0.037531435 0.059998004 5.48E-06 5.261443493 0.167629543 GS(ph)YHLDWDKMDDPNFIPFGGDTK ddPTM_HeLa_A485_30min_R1 2 GSYHLDWDKMDDPNFIPFGGDTK 23 1 A0A494BZT8;Q9Y6A5;A0A494C117;H0Y8F2 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 GS(0.526)Y(0.474)HLDWDKMDDPNFIPFGGDTK;GS(0.529)Y(0.471)HLDWDKMDDPNFIPFGGDTK ; 100.7 0.00045221 91066000 135611 104365 75762 189832 150071 138778 203199 184450 117904 247190 TRUE FALSE FALSE 165777.1991 116569.5789 103789.5165 200202.0415 135129.4043 146044.2015 159783.8737 139213.3483 141566.2513 185570.0822 0.893340118 0.62817011 0.559300914 1.078848698 0.728185291 0.787002947 0.861043288 0.750192847 0.76287217 1 17.50160461 -14 0.269944863 2.485601074 0.765246855 0.18184357 0.136160352 374.1113728 3.640179517 310.1836333 0.17035101 1.00E-14 14 -1.720354219 GS(ph)YHLDWDKMDDPNFIPFGGDTK ddPTM_HeLa_A486_30min_R1 1 GSYHLDWDKMDDPNFIPFGGDTK 23 1 A0A494BZT8;Q9Y6A5;A0A494C117;H0Y8F2 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 GS(0.531)Y(0.469)HLDWDKMDDPNFIPFGGDTK 76.733 0.0034491 35493000 62066 54806 29523 37316 57040 76693 87902 83455 45686 96479 TRUE FALSE FALSE 57715.49391 50462.97296 40955.09625 86873.53385 49885.51132 67231.39742 65907.98987 64454.11831 49646.09926 72320.03043 0.798056826 0.697773116 0.566303637 1.201237518 0.689788307 0.929637294 0.911337972 0.891234668 0.686477854 1 16.14210766 -5.200658034 24.99997841 0.889634032 0.688417476 0.302452358 0.148183194 309.6579395 127364.5528 0.038347948 0.066420577 6.30E-06 5.200658034 -0.201216556 GSALAALHCGRPPES(ph)PVNYGSPPSIADTLFSR ddPTM_HeLa_A485_30min_R1 1 GSALAALHCGRPPESPVNYGSPPSIADTLFSR 32 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 GS(0.012)ALAALHCGRPPES(0.977)PVNY(0.01)GSPPSIADTLFSR 54.287 0.013187 205460000 27186 36763 34472 36929 51046 33225 40532 44308 35755 44012 TRUE FALSE FALSE 33233.43191 41062.11305 47224.6273 38946.33776 45963.68101 34964.60962 31872.00708 33441.39353 42930.70054 33040.61838 1.005835651 1.242776772 1.429290056 1.178741188 1.391126536 1.058231091 0.964631071 1.012129771 1.299331025 1 15.01195307 -6.292220358 23.66245562 1.061233025 1.255228807 0.305271295 0.137535485 440.508831 338633.1548 0.048736581 0.042988152 5.10E-07 6.292220358 0.193995782 GSALAALHCGRPPES(ph)PVNYGSPPSIADTLFSR ddPTM_HeLa_A486_30min_R1 1 GSALAALHCGRPPESPVNYGSPPSIADTLFSR 32 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 GS(0.008)ALAALHCGRPPES(0.973)PVNY(0.015)GS(0.003)PPSIADTLFSR 46.834 0.023531 196690000 56581 57282 51679 17958 67017 51206 49531 55162 46993 52693 TRUE FALSE FALSE 52614.96408 52742.7657 71690.49281 41807.13155 58611.10295 44888.72434 37137.81991 42602.81678 51066.39108 39498.32983 1.332080731 1.335316352 1.81502593 1.058453148 1.483888134 1.136471454 0.940237728 1.07859793 1.292874694 1 15.26950403 -6.355844143 5.113201529 1.079379089 1.404119524 0.398890532 0.194161129 0.240602028 10.06724552 0.068975823 0.06059957 4.41E-07 6.355844143 0.324740435 GSALAS(ph)LSPLR ddPTM_HeLa_A486_30min_R1 1 GSALASLSPLR 11 0 D6RGX4 D6RGX4 FAM90A26 1 0 GS(0.123)ALAS(0.871)LS(0.006)PLR 56.205 0.027392 536790000 104550 161250 301210 9884.9 263930 73033 56547 84155 171920 24962 TRUE FALSE FALSE 97221.5849 148471.9627 417846.5787 23012.54676 230825.4384 64022.93101 42398.34251 64994.74359 186822.164 18711.35272 5.195860841 7.934859918 22.33117962 1.229870822 12.3361171 3.4216089 2.265915411 3.473545956 9.984428532 1 14.19162624 -6.272651925 24.10302541 4.073496868 9.921087507 0.211834285 5.568578179 751.280725 1614983.423 1.938388588 1.72619291 5.34E-07 6.272651925 5.847590639 GSAPHSESDLPEQEEEILGS(ph)DDDEQEDPNDYCKGGYHLVK ddPTM_HeLa_A486_30min_R1 1 GSAPHSESDLPEQEEEILGSDDDEQEDPNDYCKGGYHLVK 40 1 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4;D6RBM8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 GSAPHSESDLPEQEEEILGS(1)DDDEQEDPNDYCKGGYHLVK 132.47 1.65E-07 255560000 115050 118110 86466 64658 215600 128290 215040 201200 86301 162490 TRUE FALSE FALSE 106985.5891 108750.5335 119947.9508 150527.0916 188557.4376 112462.8842 161234.7175 155391.1522 93781.64017 121801.4464 0.87836058 0.89285092 0.984782648 1.235839936 1.548072238 0.923329628 1.323750434 1.275774277 0.769955062 1 16.89417174 -5.080198894 3.86317411 1.178228136 0.893235055 0.21284108 0.208607153 0.322887932 9.022255266 0.057217432 0.109112654 8.31E-06 5.080198894 -0.284993081 GSASYS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 GSASYSPPR 9 0 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 0 GSASYS(1)PPR;GSAS(0.001)YS(0.999)PPR;GSAS(0.001)YS(0.999)PPR;GSASYS(1)PPR ;;; 136.96 0.00017101 2598880000 1326540 1742780 1887780 1434930 1939660 1642700 1906000 1948450 1620600 1817270 TRUE FALSE FALSE 1621624.246 1946582.961 2586148.379 1513316.592 1746540.64 1728709.232 1498767.529 1470589.582 1945839.555 1364258.033 1.188649219 1.426843686 1.895644604 1.109259799 1.280212832 1.267142424 1.098595348 1.077940937 1.42629877 1 20.37968511 -5.36677159 20.73671547 1.187586076 1.497417159 0.359013347 0.198012402 9.157744413 1793.282804 0.055623293 0.082502667 4.30E-06 5.36677159 0.309831084 GSASYS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 GSASYSPPR 9 0 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 0 GSASYS(1)PPR;GSASYS(1)PPR;GSAS(0.001)YS(0.999)PPR ;; 146.57 9.25E-05 1956320000 1475950 1753910 1607290 526888 1918480 1514090 1714270 1693230 1502950 1608760 TRUE FALSE FALSE 1372493.527 1614923.784 2229675.733 1226621.891 1677846.349 1327296.97 1285341.514 1307718.492 1633226.916 1205916.025 1.138133584 1.339167696 1.84894776 1.017170239 1.391345927 1.100654559 1.065863201 1.084419201 1.354345479 1 20.20169802 GSCDSGELGRNS(ph)GTFSSQIENTPILCPFHLQPVPEPETVLK ddPTM_HeLa_A485_30min_R1 1 GSCDSGELGRNSGTFSSQIENTPILCPFHLQPVPEPETVLK 41 1 P48200;P48200-2 P48200 IREB2 Iron-responsive element-binding protein 2 1 0 GS(0.01)CDS(0.116)GELGRNS(0.409)GT(0.116)FS(0.116)S(0.116)QIENT(0.116)PILCPFHLQPVPEPETVLK 49.385 0.011664 36756000 11938 11543 15389 5092.1 16275 19065 23683 18516 14198 17156 TRUE FALSE FALSE 14593.56691 12892.85344 21082.03149 5370.268529 14654.60386 20063.21392 18622.93358 13974.92197 17047.40837 12879.32493 1.133100298 1.001050405 1.63688948 0.416968169 1.137839439 1.557784591 1.445955722 1.08506634 1.323625924 1 13.65276936 -6.01050871 24.9806982 1.303552453 1.047298338 0.111106875 0.312990507 1095.665509 2604557.374 0.099715502 0.106257581 9.76E-07 6.01050871 -0.256254115 GSDALS(ph)ET(ph)SS(ph)VSHIEDLEK ddPTM_HeLa_A485_30min_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 3 0 GS(0.001)DALS(0.992)ET(0.887)S(0.276)S(0.826)VS(0.018)HIEDLEK 118.22 4.39E-05 370310000 325590 466410 431760 731560 734640 656280 1041500 1008700 612060 1045700 TRUE FALSE FALSE 398016.3722 520952.5923 591485.991 771523.2704 661496.6621 690641.806 818975.0167 761314.7434 734894.8279 785026.2347 0.507010281 0.663611698 0.753460158 0.982799346 0.842642746 0.879769077 1.043245411 0.969795288 0.936140469 1 19.58238134 -3.958634497 0.591039807 0.97531487 4.71E-13 0.876216466 0.056869901 1.667430358 0.343706607 0.029307052 1.199364833 0.000109993 3.958634497 -0.97531487 HMRT(ph)HSER ddPTM_HeLa_A486_30min_R1 1 HMRTHSER 8 1 L0B1V4 L0B1V4 REST 1 0 HMRT(1)HSER 62.659 0.027817 271510000 402220 273350 211820 96094 313070 168650 168120 105500 79930 69757 TRUE FALSE FALSE 374026.4551 251688.7505 293842.3767 223711.6883 273801.8413 147843.6777 126054.5978 81479.95305 86858.39676 52289.39316 7.153008143 4.813380597 5.619540771 4.27833782 5.236278809 2.827412383 2.410710666 1.558250118 1.66110929 1 15.67423071 -6.311098674 0.560671117 0.888808567 6.301078525 0.891574221 0.641721163 0.269922626 0.183051344 0.535023027 0.609127905 4.89E-07 6.311098674 5.412269959 up GSDALS(ph)ET(ph)SSVSHIEDLEK ddPTM_HeLa_A485_30min_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 2 0 GS(0.001)DALS(0.895)ET(0.551)S(0.474)S(0.075)VS(0.005)HIEDLEK 99.93 0.00039699 56367000 56729 101860 97391 120940 134890 134600 164720 166090 107110 170730 TRUE FALSE FALSE 69348.17034 113771.6409 133419.9837 127546.646 121459.878 141647.4479 129526.2264 125356.1671 128605.9945 128170.1531 0.541063334 0.887660959 1.040959853 0.995135318 0.947645572 1.105151586 1.010580258 0.97804492 1.003400491 1 16.96770082 -4.287251591 2.465627782 1.009923189 0.45093291 0.925708054 0.039994061 0.118332708 0.936795332 0.010602985 0.136300525 5.16E-05 4.287251591 -0.558990279 GSDALS(ph)ETS(ph)S(ph)VSHIEDLEK ddPTM_HeLa_A486_30min_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 3 0 GSDALS(0.98)ET(0.529)S(0.617)S(0.869)VS(0.005)HIEDLEK 119.41 1.57E-05 526610000 362260 526290 390820 379860 676010 728190 971930 949740 598310 1006200 TRUE FALSE FALSE 336867.4447 484584.8637 542155.9705 884333.2771 591218.5223 638353.3215 728742.834 733504.9347 650171.9925 754240.9707 0.446631061 0.642480165 0.718810024 1.172481092 0.783858933 0.846351957 0.966193647 0.972507412 0.862021579 1 19.52466599 -4.803380291 2.190257997 0.932259957 0.493764841 0.684079715 0.109816498 0.181674843 1.691779738 0.030079456 0.101098163 1.57E-05 4.803380291 -0.438495115 GSDALS(ph)ETSSVS(ph)HIEDLEK ddPTM_HeLa_A486_30min_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 2 0 GSDALS(0.582)ET(0.191)S(0.207)S(0.157)VS(0.863)HIEDLEK 119.48 1.87E-05 56124000 112020 149320 108740 43402 182740 162020 220130 192490 143030 198920 TRUE FALSE FALSE 104167.9765 137487.3394 150847.0402 101042.0494 159819.0452 142031.6197 165051.1457 148664.229 155427.9556 149109.1372 0.698602235 0.922058446 1.011655241 0.677638214 1.071825967 0.952534649 1.106915034 0.997016224 1.042377137 1 17.18600914 -5.791435943 24.99996852 1.0284237 0.84739811 0.489797679 0.099652467 189.3176969 157781.645 0.030321454 0.034385596 1.62E-06 5.791435943 -0.181025591 GSDALS(ph)ETSSVSHIEDLEK ddPTM_HeLa_A485_30min_R1 3 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GSDALS(0.993)ET(0.006)S(0.001)SVSHIEDLEK;GSDALS(0.985)ET(0.012)S(0.002)SVSHIEDLEK;GSDALS(1)ETSSVSHIEDLEK ;; 285.38 4.23E-70 1606490000 1079100 1626240 1543200 1656890 2491070 1808370 2554490 2841140 2145090 2680660 TRUE FALSE FALSE 1319142.072 1816414.622 2114093.898 1747401.705 2243050.324 1903053.457 2008702.343 2144345.96 2575589.887 2012420.796 0.655500119 0.902601794 1.050522784 0.868308312 1.114603034 0.945653842 0.998152249 1.065555457 1.279846587 1 20.94050057 -3.682778685 0.818777239 1.052994781 1.06E-38 0.574407523 0.102184014 4.320266568 1.148597118 0.03716446 5.141636428 0.000207597 3.682778685 -1.052994781 GSDALS(ph)ETSSVSHIEDLEK ddPTM_HeLa_A486_30min_R1 3 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GSDALS(1)ETSSVSHIEDLEK;GSDALS(0.97)ET(0.022)S(0.008)SVSHIEDLEK;GSDALS(0.738)ET(0.179)S(0.083)SVSHIEDLEK ;; 327.3 6.58E-102 1765200000 1541630 1720690 1249050 275478 2248220 2031770 2540210 2272100 1777470 2136030 TRUE FALSE FALSE 1433569.698 1584336.258 1732715.611 641326.7059 1966227.284 1781110.875 1904622.59 1754792.43 1931542.531 1601154.185 0.895335197 0.989496373 1.082166619 0.400540255 1.228006211 1.112391856 1.189531032 1.095954685 1.206343867 1 20.61068081 GSDALSET(ph)S(ph)S(ph)VSHIEDLEK ddPTM_HeLa_A486_30min_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 3 0 GSDALS(0.534)ET(0.753)S(0.753)S(0.957)VS(0.002)HIEDLEK 117.64 4.79E-05 35389000 48616 62961 52680 46393 88560 93030 115420 112790 77264 120030 TRUE FALSE FALSE 45208.26945 57971.74106 73079.10682 108005.2486 77451.97901 81552.90446 86540.69521 87110.17919 83961.30573 89973.70674 0.502460898 0.644318692 0.812227366 1.200409014 0.860829034 0.906408188 0.96184428 0.968173729 0.933176022 1 16.45721584 -4.794245358 2.64565718 0.967898045 0.538776036 0.762106514 0.089682698 0.125853427 1.747409388 0.024200871 0.07274554 1.61E-05 4.794245358 -0.429122009 GSDALSETSS(ph)VSHIEDLEK ddPTM_HeLa_A485_30min_R1 4 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GSDALSETS(0.016)S(0.984)VSHIEDLEK;GSDALSET(0.002)S(0.198)S(0.8)VSHIEDLEK;GSDALSETS(0.011)S(0.989)VSHIEDLEK;GSDALSET(0.002)S(0.02)S(0.978)VSHIEDLEK ;;; 303.86 1.27E-79 846530000 1006590 975030 796010 1133320 1314360 1059540 1580860 1654590 913300 1502070 TRUE FALSE FALSE 1230502.473 1089051.277 1090487.224 1195230.402 1183497.703 1115015.876 1243096.347 1248799.208 1096590.933 1127631.593 1.091227384 0.965786418 0.967059837 1.059947601 1.049542875 0.9888122 1.102395813 1.107453193 0.972472694 1 20.10486437 -5.282558949 24.4817609 1.045419884 1.003800723 0.063017187 0.053244279 1351.952303 1567177.104 0.015007634 0.022282977 5.22E-06 5.282558949 -0.041619161 GSDALSETSS(ph)VSHIEDLEK ddPTM_HeLa_A486_30min_R1 4 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GSDALSET(0.004)S(0.019)S(0.976)VSHIEDLEK;GSDALSETS(0.016)S(0.983)VSHIEDLEK;GSDALSET(0.002)S(0.128)S(0.858)VS(0.012)HIEDLEK;GSDALS(0.001)ET(0.013)S(0.146)S(0.839)VSHIEDLEK ;;; 275.5 1.45E-69 773730000 1032960 1203590 824690 381527 1185810 1367880 1622630 1588050 940680 1379370 TRUE FALSE FALSE 960554.8382 1108213.145 1144032.054 888214.1373 1037074.653 1199124.873 1216630.812 1226485.682 1022218.9 1033966.774 0.928999715 1.071807309 1.106449533 0.859035474 1.003005782 1.159732502 1.176663354 1.186194482 0.988638055 1 19.9797584 -6.244443517 20.96151964 1.118533909 0.996954646 0.254865143 0.090468653 131.2237056 161840.9716 0.030298615 0.030161304 5.70E-07 6.244443517 -0.121579263 GSDASWKNDQEPPPEALDFS(ph)DDEKEK ddPTM_HeLa_A486_30min_R1 3 GSDASWKNDQEPPPEALDFSDDEKEK 26 2 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 1 0 GSDASWKNDQEPPPEALDFS(1)DDEKEK;GSDASWKNDQEPPPEALDFS(1)DDEKEK;GSDASWKNDQEPPPEALDFS(1)DDEKEK ;; 257.88 2.22E-62 1199270000 926540 604234 184776 988130 518078 830460 1687190 1431390 377797 2649380 TRUE FALSE FALSE 861594.3307 556352.2973 256326.2157 2300416.577 453095.8264 728006.2887 1265037.217 1105493.744 410544.7481 1985958.003 0.433843178 0.280143032 0.129069303 1.158340999 0.228149752 0.36657688 0.636990921 0.556655147 0.206723781 1 20.92140368 -11.18132353 2.317645641 2.444152796 0.451335442 0.258700172 0.282084404 36448916.39 7434135.083 276420863.5 0.070756143 6.59E-12 11.18132353 -1.992817354 GSDFDCELR ddPTM_HeLa_A485_30min_R1 2 GSDFDCELR 9 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 121.67 0.0039027 74511000 47265 62891 79942 48604 89548 53394 76213 72613 63745 78562 FALSE FALSE TRUE 57778.93619 70245.55537 109515.8725 51259.11345 80632.2867 56189.62728 59929.46995 54804.5479 76538.0368 58977.93923 0.979670313 1.19104798 1.856895543 0.869123508 1.367160124 0.952722798 1.016133672 0.929238095 1.297740101 1 15.84788779 -5.942996711 1.584006259 1.041419458 1.288756259 0.109500055 0.267938472 0.802058329 4.130253547 0.103802132 0.12073377 1.14E-06 5.942996711 0.247336802 GSDIDNPTLTVMDIS(ph)PPSR ddPTM_HeLa_A485_30min_R1 2 GSDIDNPTLTVMDISPPSR 19 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 GSDIDNPTLTVMDIS(0.996)PPS(0.004)R;GSDIDNPTLTVMDIS(0.995)PPS(0.005)R ; 190.25 2.01E-18 105152000 48346 54201 61795 51077 68707 51288 61728 60137 70548 71592 TRUE FALSE FALSE 59100.40091 60539.33546 84655.542 53867.20718 61866.28984 53973.36037 48539.30853 45388.30646 84706.3365 53745.43195 1.099635797 1.126408948 1.575120693 1.002265778 1.151098569 1.004240889 0.903133657 0.84450538 1.576065787 1 15.71385452 GSDIDNPTLTVMDIS(ph)PPSR ddPTM_HeLa_A486_30min_R1 2 GSDIDNPTLTVMDISPPSR 19 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 GSDIDNPTLTVMDIS(1)PPSR;GSDIDNPTLTVMDIS(0.985)PPS(0.015)R ; 222.39 9.49E-35 88570000 52535 57863 56444 25368 72124 59935 68038 65317 56495 56552 TRUE FALSE FALSE 48852.56779 53277.72515 78300.62842 59057.98603 63077.53539 52540.82907 51014.17277 50445.74496 61392.03209 42391.01111 1.15242752 1.256816569 1.847104525 1.393172385 1.487993179 1.23943326 1.20341958 1.190010421 1.448232313 1 15.37147076 -6.274037176 20.26339397 1.227294523 1.439424147 0.22087606 0.197230282 103.4312917 166364.5541 0.070951489 0.063268686 5.32E-07 6.274037176 0.212129624 GSDIDNPTLTVMDIS(ph)PPSRS(ph)PR ddPTM_HeLa_A485_30min_R1 2 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 0 GSDIDNPTLTVMDIS(0.997)PPS(0.013)RS(0.989)PR;GSDIDNPTLTVMDIS(0.998)PPS(0.078)RS(0.923)PR ; 116.04 8.56E-05 398910000 475230 599270 728270 550370 868220 672290 724790 765600 650130 764140 TRUE FALSE FALSE 580943.274 669349.4135 997687.3788 580435.3195 781776.9683 707490.0648 569932.6955 577835.3996 780605.1277 573653.961 1.012706812 1.166817383 1.739179796 1.01182134 1.362802354 1.233304593 0.993513048 1.007289131 1.360759588 1 19.12982121 -6.613258915 7.002422344 1.091908331 1.269563294 0.120616534 0.216758782 0.483638145 31.71771712 0.083135059 0.064150228 2.44E-07 6.613258915 0.177654963 GSDIDNPTLTVMDIS(ph)PPSRS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 0 GSDIDNPTLTVMDIS(0.999)PPS(0.18)RS(0.821)PR 146.03 1.98E-09 134710000 237470 338550 381710 120770 443960 334300 375390 348820 306990 305320 TRUE FALSE FALSE 220824.5793 311722.065 529518.3345 281158.6634 388274.397 293057.4649 281463.4515 269401.3007 333600.1404 228865.8847 0.964864552 1.362029406 2.313662149 1.22848656 1.696514959 1.28047684 1.229818292 1.177114278 1.457622838 1 17.8041429 -6.400543277 6.247476335 1.234317942 1.532638466 0.14492636 0.34484952 0.498562278 23.43965389 0.124625467 0.109363233 3.98E-07 6.400543277 0.298320524 GSDIDNPTLTVMDISPPSRS(ph)PR ddPTM_HeLa_A485_30min_R1 2 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 GSDIDNPTLTVMDISPPS(0.139)RS(0.861)PR;GSDIDNPTLTVMDISPPS(0.038)RS(0.961)PR ; 210.91 1.28E-27 523440000 75066 114285 134726 96987 154875 116851 136364 150992 113198 135752 TRUE FALSE FALSE 91764.17273 127649.6366 184566.7538 102285.1542 139455.1012 122969.1377 107228.7174 113960.9753 135915.8003 101911.5247 0.900429789 1.252553496 1.811048891 1.003666214 1.368393826 1.206626414 1.052174596 1.118234425 1.333664673 1 16.63695768 -6.521803473 23.06830292 1.134946859 1.282528284 0.069172231 0.240041393 44.3644021 951903.8127 0.091546681 0.072022801 3.01E-07 6.521803473 0.147581426 GSDIDNPTLTVMDISPPSRS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 GSDIDNPTLTVMDIS(0.001)PPS(0.194)RS(0.805)PR;GSDIDNPTLTVMDISPPS(0.031)RS(0.969)PR ; 189.88 4.30E-20 361890000 119266 166451 184850 67043 238560 156571 200660 200306 161180 154496 TRUE FALSE FALSE 110906.0693 153260.8166 256428.8705 156079.4922 208637.5803 137254.8619 150452.7456 154700.6964 175151.2122 115809.196 0.957662026 1.323390731 2.214235823 1.347729693 1.801563153 1.185181028 1.299143339 1.33582394 1.512411952 1 16.82139029 -6.285343063 24.7716006 1.289540503 1.545505635 0.133261799 0.33066701 1608.444566 1666839.35 0.118836176 0.104860968 5.18E-07 6.285343063 0.255965133 GSDS(ph)DSEGDNPEK ddPTM_HeLa_A485_30min_R1 5 GSDSDSEGDNPEK 13 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 GSDS(1)DSEGDNPEK;GSDS(0.967)DS(0.033)EGDNPEK;GSDS(1)DSEGDNPEK;GSDS(0.999)DS(0.001)EGDNPEK;GSDS(0.993)DS(0.007)EGDNPEK ;;;; 310.06 2.77E-68 1924490000 2370790 1838530 1627490 3449930 2437370 2002030 2797140 2135880 1981360 4174170 TRUE FALSE FALSE 2898164.056 2053530.09 2229566.277 3638390.94 2194696.885 2106853.195 2199508.188 1612052.081 2379000.778 3133626.239 0.924859519 0.655320684 0.711497194 1.16108006 0.700369705 0.672337105 0.701905084 0.514436617 0.759184598 1 21.57940168 -5.938202679 24.99999978 0.6962456 0.849158691 0.122475713 0.17012808 129.8460846 52527.75913 0.052411238 0.059428754 1.15E-06 5.938202679 0.152913091 GSDS(ph)DSEGDNPEK ddPTM_HeLa_A486_30min_R1 3 GSDSDSEGDNPEK 13 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 GSDS(1)DSEGDNPEK;GSDS(1)DSEGDNPEK;GS(0.001)DS(0.999)DSEGDNPEK ;; 352.73 1.02E-94 1988050000 3250400 3796170 2080980 1643049 3403920 4381220 4785770 4271060 3174530 5068780 TRUE FALSE FALSE 3022563.745 3495347.664 2886791.187 3825101.107 2976968.613 3840709.621 3588319.727 3298632.875 3449700.816 3799524.496 0.795511056 0.919943448 0.759776964 1.00673153 0.783510836 1.010839547 0.944412842 0.868169919 0.907929616 1 21.85738745 -5.319430889 0.832148829 0.931137859 0.825437254 0.204588538 0.080402141 1.472189416 1.876499727 0.035283069 0.108819668 4.79E-06 5.319430889 -0.105700605 GSDS(ph)DSEGDNPEKK ddPTM_HeLa_A485_30min_R1 1 GSDSDSEGDNPEKK 14 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 GSDS(1)DSEGDNPEKK 186.75 9.37E-18 507310000 427990 260220 181540 719280 352600 356210 590960 423900 338290 985200 TRUE FALSE FALSE 523194.899 290650.4654 248699.2005 758572.4451 317493.9059 374860.6048 464696.5683 319937.8604 406181.7 739607.7713 0.707395081 0.392979193 0.336258231 1.025641529 0.42927335 0.506837028 0.62830136 0.432577743 0.549185279 1 19.49640086 -10.87157672 2.401154961 1.220015865 0.552271018 0.330991725 0.189073483 58876835.41 32379197.21 73748930.39 0.046181977 1.34E-11 10.87157672 -0.667744847 GSDS(ph)DSEGDNPEKK ddPTM_HeLa_A486_30min_R1 2 GSDSDSEGDNPEKK 14 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 GSDS(0.998)DS(0.002)EGDNPEKK;GS(0.004)DS(0.996)DSEGDNPEKK ; 216.72 7.96E-28 1314490000 1427710 1211890 539940 906510 1079310 1815050 2179700 1846700 1124590 2642800 TRUE FALSE FALSE 1327634.902 1115855.423 749019.2281 2110401.092 943932.8756 1591127.585 1634316.005 1426246.723 1222070.367 1981025.678 0.670175514 0.563271559 0.378096678 1.065307288 0.476486946 0.803183726 0.824984766 0.719953678 0.616887696 1 20.91781615 -13.99999999 0.080167887 1.970891953 0.384909126 0.23051631 0.181643703 380.4583508 2.154740267 66.45895616 6.161507093 1.00E-14 13.99999999 -1.585982827 GSDS(ph)EDEVLR ddPTM_HeLa_A485_30min_R1 2 GSDSEDEVLR 10 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 GSDS(1)EDEVLR;GS(0.001)DS(0.999)EDEVLR ; 126.12 0.00010865 304080000 287497 350250 396493 302600 453010 374799 380940 428610 333671 400250 TRUE FALSE FALSE 351449.7158 391208.6907 543172.2602 319130.2718 407906.7338 394422.8961 299549.057 323492.7255 400635.7091 300475.0411 1.169646952 1.301967343 1.807711743 1.062085791 1.357539489 1.312664422 0.996918266 1.076604314 1.333341058 1 18.19688563 -6.651543187 6.622789527 1.109055993 1.346667513 0.244969701 0.200776262 0.327554809 17.9189788 0.077983938 0.060022088 2.23E-07 6.651543187 0.23761152 GSDS(ph)EDEVLR ddPTM_HeLa_A486_30min_R1 1 GSDSEDEVLR 10 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 GS(0.018)DS(0.982)EDEVLR 141.44 6.62E-06 364710000 258480 310540 261780 84067 328340 259950 303420 327890 278480 310270 TRUE FALSE FALSE 240361.8868 285931.6794 363148.2267 195712.2245 287156.5356 227880.012 227501.1068 253236.6048 302618.8706 232576.3725 1.033475087 1.229409834 1.561414957 0.841496591 1.234676302 0.979807233 0.978178068 1.088832034 1.301159131 1 17.82734501 -5.273375817 24.99558993 1.064747587 1.270230971 0.244805344 0.172219786 1082.351137 2266504.18 0.048197626 0.072123923 5.33E-06 5.273375817 0.205483383 GSDS(ph)LIK ddPTM_HeLa_A485_30min_R1 1 GSDSLIK 7 0 Q99623-2;Q99623 Q99623-2 PHB2 Prohibitin-2 1 0 GSDS(1)LIK 115.13 0.0015012 0 297170 309860 252380 357420 355840 384670 459050 494560 302660 575470 TRUE FALSE FALSE 363274.4413 346095.4316 345745.8644 376944.9496 320411.3202 404810.7264 360970.2174 373268.3846 363401.0858 432015.9197 0.840882071 0.80111731 0.800308157 0.8725256 0.741665539 0.937027336 0.835548416 0.864015346 0.841175219 1 18.72072495 -14 0.179375292 1.672397917 0.80246327 0.533847998 0.047117491 99.91550204 0.960451602 23.86895862 0.14161843 1.00E-14 14 -0.869934647 GSDYSWSYQT(ph)PPS(ph)SPSSSSSRK ddPTM_HeLa_A485_30min_R1 1 GSDYSWSYQTPPSSPSSSSSRK 22 1 Q765P7;A0A087WXN9;H3BPV0 Q765P7 MTSS1L MTSS1-like protein 2 0 GS(0.002)DY(0.021)S(0.084)WS(0.09)Y(0.018)QT(0.781)PPS(0.5)S(0.466)PS(0.008)S(0.008)S(0.007)S(0.007)S(0.007)RK 62.7 0.012508 229600000 80822 133570 99304 85523 159600 148700 194430 256410 106470 115050 TRUE FALSE FALSE 98800.57507 149189.8496 136040.682 90194.90493 143709.6636 156485.7021 152888.4422 193525.0455 127837.5524 86370.15234 1.143920352 1.727331092 1.575089059 1.044283268 1.663881095 1.811803011 1.77015367 2.240647263 1.480112619 1 16.39824521 -5.979478607 24.76947911 1.744146453 1.405153382 0.117431519 0.347329987 373.1495379 450391.8247 0.104034296 0.117951524 1.05E-06 5.979478607 -0.338993072 GSEDS(ph)PPKHAGNNESHSSR ddPTM_HeLa_A485_30min_R1 6 GSEDSPPKHAGNNESHSSR 19 1 P48651-2;P48651 P48651-2 PTDSS1 Phosphatidylserine synthase 1 1 0 GS(0.089)EDS(0.911)PPKHAGNNESHSSR;GSEDS(1)PPKHAGNNESHSSR;GS(0.002)EDS(0.998)PPKHAGNNESHSSR;GSEDS(1)PPKHAGNNESHSSR;GS(0.025)EDS(0.975)PPKHAGNNESHSSR;GS(0.021)EDS(0.979)PPKHAGNNESHSSR ;;;;; 240.26 7.92E-46 2012242000 1636306 2679860 1691819 779505 2378080 1607300 2085660 4118230 2103761 3414700 TRUE FALSE FALSE 2000296.625 2993246.315 2317693.251 822087.3843 2141310.005 1691455.743 1640041.703 3108227.635 2525966.536 2563478.133 0.78030571 1.167650419 0.904120547 0.320692177 0.835314325 0.659828426 0.639772067 1.212504057 0.985366914 1 21.28967116 -7.259643083 24.99461903 1.074201616 0.761948341 0.309427118 0.2105028 211.0928252 2937307.905 0.112252293 0.060547001 5.50E-08 7.259643083 -0.312253275 GSEDS(ph)PPKHAGNNESHSSR ddPTM_HeLa_A486_30min_R1 4 GSEDSPPKHAGNNESHSSR 19 1 P48651-2;P48651 P48651-2 PTDSS1 Phosphatidylserine synthase 1 1 0 GS(0.018)EDS(0.982)PPKHAGNNESHSSR;GSEDS(1)PPKHAGNNESHSSR;GS(0.02)EDS(0.98)PPKHAGNNESHSSR;GSEDS(1)PPKHAGNNESHSSR ;;; 211.5 2.68E-26 1127247000 1145010 1109160 1136023 39127.9 1572570 833390 887448 784296 1075380 350491 TRUE FALSE FALSE 1064750.712 1021266.122 1575921.529 91091.72861 1375323.607 730574.8151 665399.1239 605728.9219 1168594.804 262725.7723 4.052707515 3.887194291 5.998351496 0.346717902 5.234825632 2.780750471 2.53267549 2.305555776 4.447964104 1 18.0031982 -7.373546199 0.125247623 6.41E-13 5.788620493 0.208564695 1.517483815 10.72022419 1.373124609 27.75231453 28.76821214 4.23E-08 7.373546199 5.788620493 GSEEDPLLS(ph)PVETWK ddPTM_HeLa_A485_30min_R1 2 GSEEDPLLSPVETWK 15 0 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GSEEDPLLS(1)PVETWK;GSEEDPLLS(1)PVETWK ; 189.09 6.39E-16 38091000 217442 170234 178867 257190 252880 159175 196617 180614 182741 309280 TRUE FALSE FALSE 265811.2227 190141.3855 245037.3466 271239.6385 227702.3793 167509.1569 154608.1717 136318.1333 219415.4425 232182.1879 1.144838995 0.818931836 1.055366688 1.168218979 0.980705632 0.721455674 0.665891614 0.587117102 0.945014105 1 17.82489777 -6.18740547 4.73276134 0.750726861 1.034861006 0.417384577 0.145817289 0.201992164 8.50559841 0.048724097 0.048375217 6.50E-07 6.18740547 0.284134145 GSEEDPLLS(ph)PVETWK ddPTM_HeLa_A486_30min_R1 1 GSEEDPLLSPVETWK 15 0 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GSEEDPLLS(1)PVETWK 160.78 7.33E-12 39316000 92935 119690 72940 37542 113180 110430 119890 115520 90199 103270 TRUE FALSE FALSE 86420.73642 110205.3285 101184.3214 87399.67327 98983.90904 96806.26937 89892.25393 89218.61778 98017.52194 77410.51983 1.116395247 1.423647958 1.307113318 1.129041291 1.278688081 1.250557025 1.1612408 1.152538673 1.266204156 1 16.24024202 -14 0.154020547 0.136524925 1.303862761 0.380092137 0.089657672 135.2491805 1.219783772 35.55832733 0.418978854 1.00E-14 14 1.167337836 GSEGDCS(ph)PEDKNSVTAK ddPTM_HeLa_A485_30min_R1 2 GSEGDCSPEDKNSVTAK 17 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GSEGDCS(1)PEDKNSVTAK;GSEGDCS(1)PEDKNSVTAK ; 155.87 9.91E-09 1670970000 672850 570179 399255 1329400 925860 661310 1167480 1007670 590890 1735580 TRUE FALSE FALSE 822523.1612 636856.4742 546956.0389 1402021.756 833678.1275 695935.169 918038.3606 760537.3525 709476.203 1302931.847 0.631286405 0.48878725 0.419788679 1.07605149 0.63984784 0.534130139 0.704594306 0.583712306 0.544522881 1 20.31333019 -11.18929244 2.400633354 2.062342296 0.626913996 0.306106278 0.169466383 8770999.624 1430909.187 50946478.81 0.045129259 6.47E-12 11.18929244 -1.4354283 GSEGDCS(ph)PEDKNSVTAK ddPTM_HeLa_A486_30min_R1 5 GSEGDCSPEDKNSVTAK 17 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 GS(0.005)EGDCS(0.994)PEDKNS(0.002)VTAK;GSEGDCS(1)PEDKNSVTAK;GSEGDCS(1)PEDKNSVTAK;GSEGDCS(1)PEDKNSVTAK;GSEGDCS(1)PEDKNSVTAK ;;;; 255.98 9.79E-52 4354500000 3783720 4932940 2057660 3264810 4517730 5870570 7950960 7406850 3658830 7457510 TRUE FALSE FALSE 3518500.767 4542035.869 2854441.058 7600642.674 3951074.177 5146318.761 5961545.711 5720471.945 3975980.33 5590100.956 0.629416319 0.812514104 0.510624241 1.359661075 0.706798358 0.920612848 1.066446878 1.023321759 0.711253761 1 22.41444291 -5.221294928 24.99962234 0.961728038 0.66701783 0.376863171 0.187359148 581.1436743 361901.6612 0.048663483 0.084286389 6.01E-06 5.221294928 -0.294710208 GSEGYLAATYPTVGQT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 GSEGYLAATYPTVGQT(0.5)S(0.5)PR 184.83 1.77E-17 383650000 269150 452620 407080 307330 420020 375710 430150 453640 371310 405790 TRUE FALSE FALSE 329021.4889 505549.9717 557675.832 324118.6597 378201.334 395381.5946 338244.9385 342384.0787 445828.5111 304634.021 1.080054972 1.659532215 1.830641995 1.06396081 1.241494081 1.297890476 1.11033212 1.123919376 1.463488909 1 18.21671754 -5.279431275 24.96936167 1.194870555 1.537022016 0.339995374 0.215006001 867.7640894 1204291.175 0.060095282 0.089341299 5.25E-06 5.279431275 0.342151461 GSEGYLAATYPTVGQT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 GSEGYLAATYPTVGQT(0.5)S(0.5)PR 149.52 7.76E-08 695930000 413610 462590 459410 136400 510840 348220 456310 423230 404270 425530 TRUE FALSE FALSE 384618.0749 425932.6837 637305.8554 317546.0933 446765.6838 305260.1568 342136.4116 326869.768 439312.4491 318974.5183 1.205795613 1.33531884 1.997983597 0.995521821 1.400631267 0.957004837 1.072613617 1.024751977 1.377265029 1 18.28308165 -5.357268441 22.46911858 1.122430061 1.495936267 0.362061272 0.239764235 23.12777924 5418.095682 0.066787003 0.09906117 4.39E-06 5.357268441 0.373506206 GSEGYLAATYPTVGQTS(ph)PR ddPTM_HeLa_A485_30min_R1 5 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 GSEGYLAATYPTVGQT(0.001)S(0.999)PR;GSEGYLAATYPTVGQTS(1)PR;GSEGYLAATYPTVGQT(0.004)S(0.996)PR;GSEGYLAATYPTVGQT(0.005)S(0.995)PR;GSEGYLAATYPTVGQT(0.001)S(0.999)PR ;;;; 439.24 1.74E-203 4520400000 2904480 4654760 4722090 3094730 4713240 4045380 4585030 5057140 3932940 4369040 TRUE FALSE FALSE 3550571.556 5199093.691 6468987.594 3263787.264 4243973.276 4257189.841 3605400.884 3816868.486 4722244.983 3279918.734 1.082518149 1.585128813 1.972301181 0.995081747 1.29392635 1.297955891 1.099234821 1.163708249 1.439744508 1 21.64522864 -5.286753855 24.99965163 1.196824177 1.550497511 0.326395694 0.238085993 884.0430112 873046.5675 0.067110054 0.099580907 5.17E-06 5.286753855 0.353673334 GSEGYLAATYPTVGQTS(ph)PR ddPTM_HeLa_A486_30min_R1 4 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 GSEGYLAATYPTVGQT(0.038)S(0.962)PR;GSEGYLAATYPTVGQT(0.006)S(0.994)PR;GSEGYLAATYPTVGQT(0.229)S(0.771)PR;GSEGYLAATYPTVGQTS(1)PR ;;; 454.05 2.03E-204 4236750000 2507210 3104280 2983720 899284 3505810 2557000 2839930 2954420 2600290 2796890 TRUE FALSE FALSE 2331467.526 2858285.547 4139096.291 2093578.599 3066078.619 2241543.338 2129349.476 2281763.061 2825685.231 2096530.539 1.112059893 1.363340764 1.974259956 0.998591988 1.462453593 1.069167988 1.015653927 1.088351931 1.347791114 1 20.99957241 -5.954043687 1.528902042 1.10960176 1.431222012 0.198984242 0.260950969 0.623276661 2.993393779 0.103726495 0.12001324 1.11E-06 5.954043687 0.321620252 GSESATYVPVAPPT(ph)PAWQPEIKPEPAWHDQDETSSVKSDGAGGAR ddPTM_HeLa_A485_30min_R1 1 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGAR 45 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 GSESATYVPVAPPT(0.223)PAWQPEIKPEPAWHDQDET(0.194)S(0.194)S(0.194)VKS(0.194)DGAGGAR 54.691 0.0060117 3351400000 226660 214640 141830 330440 295630 285560 435920 441000 206940 469010 TRUE FALSE FALSE 277079.735 239740.2809 194298.819 348491.1005 266196.0392 300511.48 342782.1309 332844.0585 248470.9598 352094.4385 0.786947207 0.680897665 0.551837228 0.98976599 0.75603591 0.85349681 0.973551676 0.945326089 0.705694077 1 18.42560291 -5.26405421 24.99987999 0.883334255 0.673994397 0.4628993 0.106442637 207.7355056 1986124.487 0.029373459 0.045911683 5.44E-06 5.26405421 -0.209339858 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(ph)S(ph)SVKSDGAGGAR ddPTM_HeLa_A486_30min_R1 1 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGAR 45 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 GSESATYVPVAPPT(0.043)PAWQPEIKPEPAWHDQDET(0.492)S(0.514)S(0.512)VKS(0.44)DGAGGAR 82.817 0.00015748 531830000 265690 192440 67990 159040 154770 285990 384060 334410 158980 470650 TRUE FALSE FALSE 247066.503 177190.3535 94317.54884 370253.1574 135357.3034 250707.4615 287964.1258 258272.1431 172760.5144 352796.1766 0.700309469 0.502245674 0.267342888 1.049481774 0.383669984 0.710629758 0.816233692 0.732071831 0.489689305 1 18.4284754 -14 0.144987862 2.254544983 0.510123309 0.207827415 0.215318251 214.9555462 1.87823099 78.28295316 1.180615684 1.00E-14 14 -1.744421674 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(ph)SSVK ddPTM_HeLa_A485_30min_R1 2 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVK 37 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YAN4 Q6PKG0 LARP1 La-related protein 1 1 0 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(0.333)S(0.333)S(0.333)VK;GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(0.333)S(0.333)S(0.333)VK ; 156.18 4.34E-10 414660000 208469 130423 82888 309350 143538 175446 255240 179330 119459 440610 TRUE FALSE FALSE 254842.2098 145674.8353 113551.7205 326249.0072 129246.8527 184632.0813 200705.8889 135349.0363 143433.3256 330774.0358 0.770442 0.440405895 0.343290912 0.98631988 0.390740623 0.558181904 0.606776431 0.409188817 0.433629336 1 18.33548647 -10.28061811 4.801973561 1.000159566 0.545642113 0.339828728 0.188628747 0.000313221 4.69E-05 0.17752948 0.043042245 5.24E-11 10.28061811 -0.454517452 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(ph)SSVK ddPTM_HeLa_A486_30min_R1 1 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVK 37 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YAN4 Q6PKG0 LARP1 La-related protein 1 1 0 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(0.484)S(0.342)S(0.173)VK 172.95 8.78E-15 223330000 203710 197210 56817 87508 113610 201820 256810 194940 155330 429340 TRUE FALSE FALSE 189430.981 181582.3614 78818.06401 203723.0464 99359.97443 176921.5004 192553.4217 150556.4175 168794.1295 321830.4695 0.588604868 0.564217433 0.244905537 0.633013545 0.308733895 0.549735085 0.598306997 0.467812814 0.524481507 1 18.29594139 -11.90866764 0.390434616 2.176770586 0.479973085 0.613190953 0.119967403 69.21730474 2.371794595 67.57693903 0.076630187 1.23E-12 11.90866764 -1.696797501 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(ph)SSVKSDGAGGAR ddPTM_HeLa_A485_30min_R1 1 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGAR 45 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 GSESATYVPVAPPT(0.019)PAWQPEIKPEPAWHDQDET(0.245)S(0.245)S(0.245)VKS(0.245)DGAGGAR 81.758 0.00015253 2347300000 487860 440520 306510 676490 649330 657920 991560 1058300 454810 1105800 TRUE FALSE FALSE 596382.7739 492034.982 419900.8039 713444.9357 584680.4253 692367.6739 779705.1057 798750.2656 546086.1952 830144.4107 0.718408467 0.592710106 0.505816577 0.859422682 0.704311705 0.834032808 0.939240324 0.962182309 0.657820722 1 19.6630028 -5.743658146 1.165806351 0.881067884 0.612197842 0.454717103 0.116945823 0.432426589 1.241997362 0.048375174 0.072669362 1.80E-06 5.743658146 -0.268870042 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDET(ph)SSVKSDGAGGAR ddPTM_HeLa_A486_30min_R1 1 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGAR 45 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 GSESATYVPVAPPT(0.049)PAWQPEIKPEPAWHDQDET(0.238)S(0.238)S(0.238)VKS(0.238)DGAGGAR 85.751 3.01E-05 3230400000 237850 183540 103250 117330 235590 242480 351910 332070 165680 393030 TRUE FALSE FALSE 221177.9433 168995.622 143231.1651 273150.1695 206040.1054 212565.283 263858.3959 256464.91 180041.2758 294612.7298 0.750741298 0.573619552 0.486167605 0.927149922 0.69935914 0.721507462 0.895610981 0.870515372 0.611111665 1 18.16846024 -8.518011084 0.050287506 1.705385864 1.40E-10 0.306833193 0.132392457 109.6275802 2.342674306 44.10209839 34.36657846 3.03E-09 8.518011084 -1.705385864 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETS(ph)S(ph)VKSDGAGGAR ddPTM_HeLa_A485_30min_R1 1 GSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGAR 45 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 GSESATYVPVAPPT(0.075)PAWQPEIKPEPAWHDQDET(0.203)S(0.59)S(0.6)VKS(0.532)DGAGGAR 75.864 0.00033595 718560000 121720 80771 68672 200860 116190 138230 204580 173250 101250 315400 TRUE FALSE FALSE 148796.1941 90216.46584 94076.63048 211832.4732 104621.7156 145467.5091 160869.8117 130760.1659 121569.9463 236776.5845 0.628424447 0.381019373 0.397322356 0.894651275 0.44185837 0.61436611 0.67941605 0.552251255 0.513437368 1 17.85316689 -11.07398499 2.381387877 1.650046868 0.566738955 0.447765135 0.144269168 24102098.94 7099883.733 85124647.01 0.035853564 8.43E-12 11.07398499 -1.083307912 GSET(ph)PGAT(ph)PGSK ddPTM_HeLa_A485_30min_R1 5 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 GSET(1)PGAT(1)PGSK;GSET(1)PGAT(1)PGSK;GSET(1)PGAT(1)PGSK;GSET(1)PGAT(1)PGSK;GS(0.1)ET(0.9)PGAT(0.998)PGS(0.002)K ;;;; 251.02 1.53E-28 3072620000 5040830 4150460 3475119 5718100 5615080 4528320 7124220 6636530 3815100 6958320 TRUE FALSE FALSE 6162145.243 4635820.193 4760710.13 6030465.324 5056022.919 4765415.833 5602072.197 5008910.612 4580755.576 5223738.882 1.179642662 0.887452512 0.911360663 1.15443468 0.967893502 0.912261493 1.072425771 0.958874615 0.876911285 1 22.31665135 -7.51370124 24.15939091 0.931601403 1.004325613 0.085745065 0.098833553 727.6043902 1915430.997 0.059318702 0.025021686 3.06E-08 7.51370124 0.072724209 GSET(ph)PGAT(ph)PGSK ddPTM_HeLa_A486_30min_R1 4 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 GSET(1)PGAT(1)PGSK;GSET(1)PGAT(1)PGSK;GSET(1)PGAT(1)PGSK;GSET(1)PGAT(1)PGSK ;;; 281.76 8.89E-41 4526110000 6786000 8110320 5136770 3672660 7630000 8389770 10403100 9931800 5869530 8377040 TRUE FALSE FALSE 6310336.443 7467628.706 7125864.911 8550138.086 6672974.253 7354725.478 7800134.347 7670545.95 6378305.586 6279374.659 1.004930711 1.189231271 1.134804865 1.361622542 1.062681336 1.17125126 1.242183302 1.221546152 1.015754901 1 22.58218946 -7.772974324 23.78008024 1.007877055 1.177550957 0.339638211 0.092258064 149.3128556 307799.9998 0.083940419 0.022516919 1.69E-08 7.772974324 0.169673902 GSET(ph)PGATPGSK ddPTM_HeLa_A485_30min_R1 8 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GSET(1)PGATPGSK;GSET(0.999)PGAT(0.001)PGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK ;;;;;;; 285.31 1.60E-40 10052090000 12042020 12909070 11502760 16174650 16051450 13660030 17665280 17733300 13092690 20522770 TRUE FALSE FALSE 14720725.8 14418673.44 15758109.59 17058230.17 14453311.28 14375248.05 13890948.62 13384180.37 15720272.79 15406821.13 0.95546808 0.935862974 1.02280084 1.107186877 0.938111188 0.933044391 0.9016103 0.86871784 1.020344992 1 23.87706589 -5.951620969 24.99996277 0.934034765 1.004244958 0.196587801 0.059258868 174.6441 90246.81797 0.019102394 0.021660074 1.12E-06 5.951620969 0.070210193 GSET(ph)PGATPGSK ddPTM_HeLa_A486_30min_R1 7 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(1)PGATPGSK;GSET(0.984)PGAT(0.016)PGSK;GSET(0.999)PGAT(0.001)PGSK ;;;;;; 292.95 5.25E-49 9570320000 9108600 9939120 6431340 3306840 9557390 9435720 10881200 10474800 8286230 10676190 TRUE FALSE FALSE 8470134.177 9151507.934 8921727.085 7698490.638 8358613.027 8271636.802 8158608.67 8089916.703 9004487.088 8002802.534 1.058395998 1.143537891 1.114825344 0.961974334 1.044460736 1.033592515 1.019468947 1.010885458 1.125166721 1 22.93207388 -5.226067891 24.77133757 1.028960568 1.109381593 0.398253728 0.043652978 519.8795491 364080.9423 0.011444847 0.019822055 5.94E-06 5.226067891 0.080421025 GSFAFDS(ph)PHHYTPIEGTPYCFSR ddPTM_HeLa_A486_30min_R1 1 GSFAFDSPHHYTPIEGTPYCFSR 23 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 GS(0.078)FAFDS(0.339)PHHY(0.244)T(0.339)PIEGTPYCFSR 74.206 0.0045067 42654000 40690 38677 43482 6136.1 54370 30706 30083 40010 36805 26272 TRUE FALSE FALSE 37837.84112 35612.09366 60319.39489 14285.1509 47550.40762 26917.80592 22555.91521 30900.59641 39995.28703 19693.3202 1.921354081 1.808333653 3.062936787 0.725380523 2.41454499 1.366849553 1.145358679 1.569090235 2.030906248 1 14.26541874 -5.2643516 24.98747022 1.510509787 2.218620685 0.299449331 0.556068236 347.0964527 2978169.021 0.150565368 0.234958366 5.44E-06 5.2643516 0.708110898 GSFS(ph)DTGLGDGK ddPTM_HeLa_A485_30min_R1 5 GSFSDTGLGDGK 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 GSFS(1)DTGLGDGK;GSFS(1)DTGLGDGK;GSFS(0.938)DT(0.062)GLGDGK;GS(0.001)FS(0.987)DT(0.013)GLGDGK;GS(0.045)FS(0.952)DT(0.003)GLGDGK ;;;; 348.08 8.66E-87 9788400000 12019080 13523910 12138650 16395910 16918800 14811010 21496480 21427550 13350540 22108960 TRUE FALSE FALSE 14692682.88 15105413.63 16629241.77 17291577.05 15234304.87 15586491.58 16903581.44 16172409.77 16029870.92 16597603.16 0.885229195 0.910096084 1.001906216 1.041811693 0.917861737 0.939080868 1.018435088 0.974382241 0.965794324 1 23.98447158 -4.654619465 5.051604679 0.980900692 0.891670527 0.492147812 0.034693514 0.173612609 6.851400821 0.009399966 0.026230996 2.22E-05 4.654619465 -0.089230166 GSFS(ph)DTGLGDGK ddPTM_HeLa_A486_30min_R1 6 GSFSDTGLGDGK 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 GSFS(0.998)DT(0.002)GLGDGK;GSFS(1)DTGLGDGK;GSFS(0.992)DT(0.008)GLGDGK;GSFS(1)DTGLGDGK;GSFS(0.994)DT(0.006)GLGDGK;GS(0.001)FS(0.915)DT(0.085)GLGDGK ;;;;; 343.38 4.49E-74 8188560000 17977630 19433230 12331220 8236050 19912630 20927490 24601340 24611590 15534770 25357250 TRUE FALSE FALSE 16717490.97 17893270.08 17106198.63 19173940.63 17415002.27 18345669.06 18445824.53 19008068.22 16881336.37 19007629.55 0.879514772 0.941373043 0.899964858 1.008749701 0.916211157 0.965173959 0.970443183 1.000023079 0.888134753 1 24.18007529 -2.134728736 0.560366054 0.963900044 2.65E-10 0.283475475 0.039272027 47.35895596 1.570599607 0.018098572 48.61010684 0.007332824 2.134728736 -0.963900043 GSGEKPVSAPGDDT(ph)ES(ph)LHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A485_30min_R1 1 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 3 0 GSGEKPVS(0.002)APGDDT(0.999)ES(1)LHS(1)QGEEEFDMPQPPHGHVLHR 114.72 1.50E-05 305870000 123650 139680 127670 181050 168400 179600 247740 249640 136510 250190 TRUE FALSE FALSE 151155.5159 156014.3609 174900.4458 190940.3031 151633.5047 189003.5783 194808.3252 188415.3986 163906.3049 187822.2374 0.804779658 0.830649039 0.931202014 1.016601153 0.807324558 1.006289675 1.037195211 1.003158099 0.872667194 1 17.51900836 -4.782283525 3.281145929 0.962667028 0.810140742 0.420211057 0.067653121 0.227432229 4.996412005 0.018458528 0.050478514 1.65E-05 4.782283525 -0.152526286 GSGEKPVSAPGDDT(ph)ESLHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A485_30min_R1 1 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 GSGEKPVS(0.001)APGDDT(0.5)ES(0.5)LHS(0.999)QGEEEFDMPQPPHGHVLHR 64.245 0.0019247 290430000 42255 49231 47604 54120 68492 59109 69134 80883 47111 68969 TRUE FALSE FALSE 51654.47897 54988.1372 65214.70057 57076.43856 61672.69599 62203.85584 54362.95613 61046.31743 56565.74557 51776.29758 0.997647213 1.062033011 1.259547392 1.102366164 1.191137622 1.201396368 1.049958353 1.179039836 1.092502713 1 15.66000418 -9.701961285 9.445874175 1 1.130951905 0.193662966 0.076687278 0 0 0.074287682 0.018017409 1.99E-10 9.701961285 0.130951905 GSGEKPVSAPGDDT(ph)ESLHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A486_30min_R1 1 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 GSGEKPVSAPGDDT(0.741)ES(0.259)LHS(1)QGEEEFDMPQPPHGHVLHR 177.17 5.04E-16 974660000 224440 193000 136890 72793 218360 208330 233100 254550 172730 266380 TRUE FALSE FALSE 208707.915 177705.9771 189897.474 169465.7828 190971.2527 182628.3627 174775.9145 196594.5218 187702.3755 199676.7142 1.045229114 0.889968457 0.951024634 0.848700779 0.95640222 0.914620233 0.875294424 0.984564087 0.940031372 1 17.60730657 -7.924998365 1.334669799 0.995876523 0.925017319 0.123363997 0.053553687 0.807509772 3.214554785 0.048416863 0.014877653 1.19E-08 7.924998365 -0.070859204 GSGEKPVSAPGDDTES(ph)LHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A485_30min_R1 8 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 GSGEKPVSAPGDDT(0.075)ES(0.924)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.434)ES(0.566)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.053)ES(0.947)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.172)ES(0.828)LHS(0.999)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.055)ES(0.947)LHS(0.998)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.005)ES(0.995)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.011)ES(0.989)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.154)ES(0.846)LHS(1)QGEEEFDMPQPPHGHVLHR ;;;;;;; 262.71 2.16E-65 12482170000 1935562 2172261 1854204 2055104 2404500 2500279 3106287 3488438 1949796 2827774 TRUE FALSE FALSE 2366121.089 2426288.028 2540151.219 2167369.128 2165099.537 2631189.742 2442603.406 2632893.111 2341102.173 2122861.983 1.114590166 1.142932535 1.196569179 1.020965633 1.019896514 1.239453984 1.150618093 1.240256376 1.1028047 1 21.01757915 -6.264409724 24.97932207 1.161892115 1.102518304 0.063028926 0.081293355 621.7620489 5228737.028 0.028041533 0.02577652 5.44E-07 6.264409724 -0.059373811 GSGEKPVSAPGDDTES(ph)LHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A486_30min_R1 6 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 GSGEKPVSAPGDDT(0.023)ES(0.977)LHS(1)QGEEEFDMPQPPHGHVLHR;GS(0.001)GEKPVS(0.006)APGDDT(0.461)ES(0.532)LHS(0.999)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.078)ES(0.922)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.105)ES(0.901)LHS(0.994)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.003)ES(0.997)LHS(1)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.009)ES(0.991)LHS(1)QGEEEFDMPQPPHGHVLHR ;;;;; 298.52 1.17E-94 9878360000 2243547 2180135 1645923 809781 2570120 2277996 2682373 2689282 1848733 2745140 TRUE FALSE FALSE 2086285.941 2007373.163 2283268.465 1885211.092 2247751.584 1996960.014 2011214.904 2076991.195 2008982.665 2057739.076 1.013872927 0.975523664 1.109600576 0.91615653 1.092340429 0.970463183 0.977390636 1.009355957 0.976305834 1 20.97262863 GSGEKPVSAPGDDTES(ph)LHSQGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A485_30min_R1 2 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GSGEKPVSAPGDDT(0.115)ES(0.443)LHS(0.443)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.039)ES(0.481)LHS(0.481)QGEEEFDMPQPPHGHVLHR ; 175.97 9.52E-16 1619140000 714030 984930 1000240 813510 1167890 1134890 1352650 1473040 988130 1235900 TRUE FALSE FALSE 872863.5101 1100108.996 1370270.399 857949.9914 1051610.771 1194311.086 1063645.277 1111774.63 1186438.627 927812.8751 0.94077538 1.185701369 1.476882286 0.924701537 1.13342981 1.287232714 1.146400644 1.198274631 1.278747751 1 19.82347434 GSGEKPVSAPGDDTES(ph)LHSQGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A486_30min_R1 2 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GSGEKPVSAPGDDT(0.028)ES(0.486)LHS(0.486)QGEEEFDMPQPPHGHVLHR;GSGEKPVSAPGDDT(0.005)ES(0.677)LHS(0.318)QGEEEFDMPQPPHGHVLHR ; 181.87 1.37E-21 1491460000 1640480 1287660 1165240 241438 1828430 1535210 1735560 1678860 1420360 1459240 TRUE FALSE FALSE 1525490.823 1185621.132 1616452.134 562079.8656 1599091.26 1345811.399 1301304.531 1296620.227 1543477.948 1093836.806 1.394623782 1.083910439 1.477781809 0.513860809 1.46191027 1.230358488 1.189669724 1.185387272 1.411067849 1 20.06096608 GSGEKPVSAPGDDTESLHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_HeLa_A485_30min_R1 1 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GSGEKPVSAPGDDT(0.002)ES(0.147)LHS(0.851)QGEEEFDMPQPPHGHVLHR 181.45 1.41E-21 1247000000 750110 910770 942310 727510 1056900 1055800 1315500 1426500 916000 1128000 TRUE FALSE FALSE 916969.3817 1017276.629 1290909.682 767252.0291 951671.325 1111080.055 1034432.678 1076648.638 1099832.798 846810.3593 1.082850926 1.201303949 1.524437754 0.906049413 1.123830518 1.312076598 1.221563561 1.271416471 1.29879469 1 19.69167939 -6.24767419 24.49130397 1.237783382 1.174844942 0.01915601 0.165350746 2777.26999 4941375.303 0.055279627 0.054983424 5.65E-07 6.24767419 -0.06293844 GSGGFGS(ph)TGKN ddPTM_HeLa_A485_30min_R1 1 GSGGFGSTGKN 11 1 H0YNW5;A0A0C4DGL3;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 GSGGFGS(0.888)T(0.112)GKN 70.524 0.035496 995830000 3343600 2770400 2019000 3692000 3413800 3189300 4683600 4384200 2671600 5042400 TRUE FALSE FALSE 4087372.285 3094374.181 2765912.118 3893684.611 3073910.085 3356286.816 3682910.599 3308968.076 3207765.615 3785422.478 1.079766475 0.817444869 0.730674616 1.028599749 0.812038842 0.886634672 0.972919303 0.874134418 0.847399632 1 21.85202289 -6.564787314 24.98881901 0.91550346 0.884048116 0.014730928 0.104465967 833.0069665 496690.7513 0.039521018 0.030612876 2.72E-07 6.564787314 -0.031455345 GSGGFGS(ph)TGKN ddPTM_HeLa_A486_30min_R1 1 GSGGFGSTGKN 11 1 H0YNW5;A0A0C4DGL3;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 GSGGFGS(0.919)T(0.081)GKN 71.976 0.032998 951380000 1187300 1171700 751580 391040 1205500 1172500 1359800 1343200 938550 1242000 TRUE FALSE FALSE 1104076.401 1078850.225 1042611.904 910360.8821 1054294.949 1027848.871 1019563.658 1037382.682 1019904.27 930995.1159 1.185909982 1.158814054 1.119889768 0.977836367 1.132438754 1.104032506 1.095133197 1.114272958 1.095499055 1 19.82841407 -4.844285845 3.545551196 1.081591076 1.174863964 0.397329107 0.04750742 0.236437604 5.770129837 0.01257819 0.030852701 1.43E-05 4.844285845 0.093272887 GSGGGGGPQVPHQS(ph)PPKR ddPTM_HeLa_A485_30min_R1 2 GSGGGGGPQVPHQSPPKR 18 1 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 0 GSGGGGGPQVPHQS(1)PPKR;GSGGGGGPQVPHQS(1)PPKR ; 110.4 8.86E-05 773500000 605620 851100 576570 770490 811190 881210 1002190 1333490 611670 1048500 TRUE FALSE FALSE 740338.0796 950628.7414 789867.2361 812579.9177 730425.0753 927348.793 788063.9194 1006449.487 734426.5584 787128.2462 0.940555854 1.207717733 1.003479725 1.032334847 0.927961967 1.178141932 1.001188718 1.278634697 0.933045615 1 19.58623919 -6.271826953 24.82469355 1.090803506 1.03220459 0.046002509 0.116175823 2126.889687 5082918.193 0.038603796 0.03442132 5.35E-07 6.271826953 -0.058598917 GSGGGGGPQVPHQS(ph)PPKR ddPTM_HeLa_A486_30min_R1 2 GSGGGGGPQVPHQSPPKR 18 1 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 0 GSGGGGGPQVPHQS(1)PPKR;GSGGGGGPQVPHQS(1)PPKR ; 118.05 4.16E-05 616100000 467020 470130 291150 201911 495690 522650 624550 584070 372050 698520 TRUE FALSE FALSE 434284.3097 432875.1866 403891.0773 470059.012 433515.9381 458170.7569 468280.9842 451090.0112 404299.5936 523606.0454 0.829410419 0.82671923 0.771364427 0.897734119 0.827942958 0.87502954 0.894338383 0.861506499 0.772144625 1 18.99812223 -11.17003364 2.483061511 1.418109321 0.841858993 0.565370548 0.042154287 11952428.11 1503566.373 28361672.48 0.010733255 6.76E-12 11.17003364 -0.576250328 GSGIFDEST(ph)PVQTR ddPTM_HeLa_A486_30min_R1 1 GSGIFDESTPVQTR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;H3BMV3;Q9H910-2;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 GSGIFDES(0.163)T(0.837)PVQTR 241.39 1.20E-34 1079800000 1274700 1436600 1427300 435360 1863500 1329400 1454800 1452000 1135900 1191300 TRUE FALSE FALSE 1185350.113 1322758.584 1979988.784 1013540.082 1629762.454 1165392.144 1090793.653 1121411.297 1234360.727 892990.7259 1.327393531 1.481267997 2.217255708 1.134995082 1.825060895 1.30504395 1.221506138 1.25579277 1.382277207 1 19.76828567 -6.42513313 6.735651656 1.239811477 1.598800916 0.29164806 0.285463207 0.343835443 20.25959976 0.098947998 0.086836262 3.76E-07 6.42513313 0.358989439 GSGKRPAAAAAAGSAS(ph)PR ddPTM_HeLa_A485_30min_R1 3 GSGKRPAAAAAAGSASPR 18 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 GSGKRPAAAAAAGS(0.028)AS(0.972)PR;GSGKRPAAAAAAGS(0.019)AS(0.981)PR;GSGKRPAAAAAAGS(0.027)AS(0.973)PR ;; 188.24 2.47E-18 1228650000 442337 1325440 751887 257501 881454 1372960 1223650 2395860 644919 372314 TRUE FALSE FALSE 540733.3396 1480438.678 1030041.29 271567.6276 793693.3448 1444846.063 962207.1812 1808271.578 774348.3278 279502.9717 1.934624653 5.296683141 3.685260602 0.971609089 2.839659771 5.169340611 3.442565119 6.469596968 2.770447566 1 18.0925041 -6.218100007 24.40651242 4.091751994 3.007614335 0.037916946 1.719460339 958.4932247 539773.7356 0.558085833 0.5580811 6.05E-07 6.218100007 -1.084137659 GSGS(ph)PTHSLSQK ddPTM_HeLa_A485_30min_R1 5 GSGSPTHSLSQK 12 0 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 GSGS(0.999)PTHSLSQK;GSGS(1)PTHSLSQK;GSGS(0.99)PT(0.01)HSLSQK;GS(0.001)GS(0.999)PTHSLSQK;GSGS(0.97)PT(0.03)HSLSQK ;;;; 297.53 7.54E-50 3411490000 2038260 2757230 2354350 1817080 3060010 2673400 3297840 3493930 2398030 2944620 TRUE FALSE FALSE 2491663.905 3079664.064 3225322.038 1916342.479 2755344.66 2813375.09 2593229.543 2637038.189 2879292.625 2210580.426 1.1271537 1.39314726 1.45903854 0.866895616 1.246434931 1.272686149 1.173098935 1.192916647 1.302505257 1 21.07599379 -11.28184211 2.234449181 0.033480345 1.226642622 0.164563568 0.152747789 6888081.288 1123737.67 33590609.15 0.039109838 5.23E-12 11.28184211 1.193162277 GSGS(ph)PTHSLSQK ddPTM_HeLa_A486_30min_R1 4 GSGSPTHSLSQK 12 0 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 GS(0.006)GS(0.994)PTHSLSQK;GSGS(1)PTHSLSQK;GS(0.405)GS(0.575)PT(0.02)HSLSQK;GSGS(0.872)PT(0.126)HS(0.002)LSQK ;;; 296.56 8.24E-50 3880290000 3964610 3948670 2981330 541236 4342600 3524150 4039560 4073000 3298770 3350520 TRUE FALSE FALSE 3686711.312 3635763.008 4135780.819 1260024.761 3797910.615 3089376.204 3028819.362 3145666.813 3584710.04 2511527.984 1.467915682 1.447629902 1.646718988 0.501696485 1.51219124 1.230078352 1.205966798 1.252491246 1.427302448 1 21.26013392 GSGS(ph)QSSVPSVDQFTGVGIR ddPTM_HeLa_A485_30min_R1 2 GSGSQSSVPSVDQFTGVGIR 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GS(0.018)GS(0.599)QS(0.382)S(0.001)VPSVDQFTGVGIR;GS(0.048)GS(0.931)QS(0.017)S(0.004)VPSVDQFTGVGIR ; 246.67 1.73E-46 377030000 238184 292080 362530 291880 347580 290920 332040 265400 312210 368320 TRUE FALSE FALSE 291167.2091 326236.2152 496644.9331 307824.6653 312973.7148 306152.1214 261096.9415 200310.2339 374867.6832 276504.6024 1.053028436 1.179858174 1.796154309 1.113271398 1.131893328 1.107222515 0.944277018 0.72443725 1.35573759 1 18.07694397 -5.503261526 24.86046051 1.036900154 1.348033894 0.249569281 0.232233327 979.0180537 1240687.514 0.066821795 0.097490673 3.14E-06 5.503261526 0.31113374 GSGS(ph)QSSVPSVDQFTGVGIR ddPTM_HeLa_A486_30min_R1 2 GSGSQSSVPSVDQFTGVGIR 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GS(0.001)GS(0.729)QS(0.27)S(0.001)VPSVDQFTGVGIR;GSGS(0.998)QS(0.001)SVPSVDQFTGVGIR ; 308.1 1.30E-101 521570000 384570 493140 420340 124159 510230 404940 441320 437190 418540 440430 TRUE FALSE FALSE 357613.6289 454061.7904 583106.9051 289048.4266 446232.1957 354982.6199 330897.0682 337651.3808 454819.3842 330143.4613 1.08320676 1.375346913 1.766222789 0.875523706 1.351631179 1.07523747 1.002282665 1.022741385 1.377641654 1 18.33273355 -5.277658372 24.99929079 1.106961134 1.404967686 0.304897442 0.212627642 995.2020228 1533961.591 0.059388864 0.088394972 5.28E-06 5.277658372 0.298006552 GSGSRPGIEGDT(ph)PR ddPTM_HeLa_A485_30min_R1 2 GSGSRPGIEGDTPR 14 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GSGSRPGIEGDT(1)PR;GSGSRPGIEGDT(1)PR ; 74.519 0.0094687 1761530000 1504590 1861870 1885990 1309630 2413240 1829330 2001260 2160860 1672570 1789330 TRUE FALSE FALSE 1839280.855 2079599.5 2583696.184 1381171.771 2172969.352 1925110.89 1573674.452 1630905.697 2008239.457 1343282.961 1.369243047 1.54814701 1.923419159 1.028206127 1.61765571 1.43313877 1.171513745 1.214119247 1.495023398 1 20.35733181 -8.562242859 0.146149659 0.698788722 1.736901412 0.270916492 0.231548251 15.48400379 1.036842696 4.439696893 2.218338841 2.74E-09 8.562242859 1.038112691 GSGTAEVELK ddPTM_HeLa_A485_30min_R1 2 GSGTAEVELK 10 0 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 192.91 2.20E-10 77833000 77150 70830 67588 112060 119296 80067 123743 113163 79802 160209 FALSE FALSE TRUE 94311.75134 79112.95236 92591.61377 118181.554 107418.4714 84259.18431 97304.29716 85409.59682 95817.52941 120271.8447 0.784154858 0.657784476 0.769852778 0.982620283 0.893130654 0.700572811 0.809036374 0.710137913 0.796674647 1 16.87593943 -11.54835285 2.011083277 3.670539846 0.789265565 0.33181057 0.089687026 9099904.95 433820.4375 111085124.3 0.025500856 2.83E-12 11.54835285 -2.881274281 GSGTAEVELK(ac)K ddPTM_HeLa_A485_30min_R1 1 GSGTAEVELKK 11 1 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 1 GSGTAEVELK(1)K 200.71 1.28E-13 41472000 40900 47176 71986 98848 65418 54775 106240 90318 49485 149630 FALSE TRUE FALSE 49998.0639 52692.82282 98616.61699 104247.8159 58904.75422 57642.9343 83540.9561 68167.36889 59416.1856 112329.9947 0.445099851 0.469089516 0.877918825 0.928049682 0.524390252 0.5131571 0.74371014 0.606849213 0.528943189 1 16.77738369 -10.20795223 4.557632985 1.000089735 0.634552589 0.325304283 0.16104249 0.000157689 2.74E-05 0.167449311 0.04060249 6.20E-11 10.20795223 -0.365537146 GSGTAEVELK(ac)K ddPTM_HeLa_A486_30min_R1 1 GSGTAEVELKK 11 1 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 1 GSGTAEVELK(1)K 198.25 1.56E-13 39729000 26990 45575 43086 17228 37004 41959 52859 49116 29089 76333 FALSE TRUE FALSE 25098.14038 41963.47102 59770.05308 40107.65465 32362.61327 36782.52519 39633.11911 37933.35899 31610.45794 57218.71996 0.438635125 0.733387099 1.044589133 0.700953371 0.565594849 0.642840756 0.69266001 0.662953646 0.552449582 1 15.8041996 -10.1529349 4.420812601 1.000052293 0.680740282 0.300045253 0.150264082 46408387.76 53291275.73 21174.7068 0.038302738 7.03E-11 10.1529349 -0.319312011 GSGTAEVELKK ddPTM_HeLa_A485_30min_R1 4 GSGTAEVELKK 11 1 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 150.68 0.00014112 1166600000 1186070 1135040 802940 1428740 1319460 1434340 1998880 2088240 1101260 1996250 FALSE FALSE TRUE 1449907.18 1267773.054 1099980.919 1506788.448 1188089.929 1509439.824 1571802.959 1576095.866 1322272.781 1498621.613 0.96749384 0.845959409 0.733995099 1.005449565 0.792788466 1.007218774 1.048832437 1.051697007 0.882325978 1 20.51520473 -6.28288479 23.89390176 1.004422032 0.867914626 0.364469283 0.084873038 490.2342428 546203.4242 0.029373333 0.025934384 5.21E-07 6.28288479 -0.136507406 GSGTAEVELKK ddPTM_HeLa_A486_30min_R1 4 GSGTAEVELKK 11 1 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 117.79 0.0014456 524013000 883394 865887 511145 459810 1034325 946895 1216928 1150804 669315 1273831 FALSE FALSE TRUE 821472.6425 797270.9606 709074.0329 1070460.918 904590.3138 830076.7222 912439.743 888791.0511 727331.7631 954855.4264 0.860311016 0.834965104 0.742598317 1.121071199 0.947358405 0.869321888 0.955578947 0.93081217 0.761719254 1 19.86492279 -5.203000184 24.99998086 0.935862171 0.814858886 0.296633494 0.090226227 364.343573 155863.3715 0.024667112 0.042724679 6.27E-06 5.203000184 -0.121003285 GSGTAS(ph)DDEFENLR ddPTM_HeLa_A485_30min_R1 6 GSGTASDDEFENLR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGT(0.002)AS(0.998)DDEFENLR;GSGT(0.009)AS(0.991)DDEFENLR ;;;;; 303.02 2.27E-58 25586310000 5532380 7441920 7589630 5247850 8770430 6925870 7646170 8916590 7233410 7798390 TRUE FALSE FALSE 6763038.845 8312187.808 10397349.97 5534526.757 7897215.194 7288497.844 6012503.316 6729782.322 8685089.038 5854394.892 1.155207151 1.419820146 1.775990544 0.945362733 1.348937907 1.244961773 1.027006792 1.149526543 1.483516093 1 22.48108863 -5.274041922 24.95168645 1.182015371 1.447287396 0.273956205 0.207619002 1010.144115 1999974.885 0.058145398 0.086916221 5.32E-06 5.274041922 0.265272025 GSGTAS(ph)DDEFENLR ddPTM_HeLa_A486_30min_R1 6 GSGTASDDEFENLR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGTAS(1)DDEFENLR;GSGT(0.001)AS(0.999)DDEFENLR;GSGTAS(1)DDEFENLR ;;;;; 461.86 2.84E-206 26968800000 3615220 4367800 3807260 1440304 4895470 3699800 4208050 4462720 3606820 3939480 TRUE FALSE FALSE 3361811.747 4021679.621 5281533.034 3353100.501 4281434.504 3243356.293 3155151.382 3446656.076 3919462.062 2953008.566 1.138436165 1.361892297 1.788526147 1.135486209 1.449855091 1.098322683 1.068453176 1.167167653 1.327277579 1 21.49375411 -6.265104047 24.90608943 1.13870525 1.383805134 0.293506838 0.187799091 412.2477124 2801737.096 0.065507176 0.059974288 5.43E-07 6.265104047 0.245099884 GSHFWEVAADGNVS(ph)EPR ddPTM_HeLa_A485_30min_R1 1 GSHFWEVAADGNVSEPR 17 0 A0A0J9YW29;A0A087WZ56;C0H5X0;Q9H239 A0A0J9YW29 MMP28 Matrix metalloproteinase-28 1 0 GS(0.006)HFWEVAADGNVS(0.994)EPR 57.009 0.021799 273940000 68301 159200 168180 25409 241700 83440 161610 150780 112180 83959 TRUE FALSE FALSE 83494.32181 177817.0551 230396.7806 26797.02933 217635.4993 87808.78938 127080.7033 113800.9686 134693.497 63029.56645 1.324685009 2.82116894 3.655376255 0.425150145 3.452911254 1.393136496 2.016207796 1.805517236 2.136989109 1 15.94374112 -10.23240357 0.201788779 1.71E-06 2.473116941 0.11991704 0.932801563 44.82844341 1.821863068 26.40939463 2.616119886 5.86E-11 10.23240357 2.473115234 GSHFWEVAADGNVS(ph)EPR ddPTM_HeLa_A486_30min_R1 2 GSHFWEVAADGNVSEPR 17 0 A0A0J9YW29;A0A087WZ56;C0H5X0;Q9H239 A0A0J9YW29 MMP28 Matrix metalloproteinase-28 1 0 GS(0.007)HFWEVAADGNVS(0.993)EPR;GS(0.006)HFWEVAADGNVS(0.994)EPR ; 65.784 0.0085365 760390000 262605 244888 237504 10727.5 313525 148250 208601 195438 244935 63348 TRUE FALSE FALSE 244197.7456 225482.183 329471.9094 24974.16214 274199.771 129960.4223 156406.8234 150941.0338 266166.163 47485.24847 5.142602249 4.748468003 6.938405504 0.525935168 5.774420053 2.736858845 3.293798147 3.178693144 5.605238923 1 15.53519178 -5.23472272 24.98726754 3.347024443 5.523689248 0.308918952 1.661624133 980.8238934 917333.1924 0.423503048 0.733270352 5.82E-06 5.23472272 2.176664804 GSIHK(ac)FVPYLIAGIQHSCQDIGAK ddPTM_HeLa_A486_30min_R1 1 GSIHKFVPYLIAGIQHSCQDIGAK 24 1 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 1 GSIHK(1)FVPYLIAGIQHSCQDIGAK 69.981 0.0039566 52193000 28348 51516 48050 8508.7 67212 47815 55927 52921 51453 26675 FALSE TRUE FALSE 26360.95159 47433.68454 66656.24682 19808.68361 58781.64423 41916.07145 41933.47306 40872.04356 55912.98747 19995.40637 1.31835038 2.372229084 3.333578002 0.990661717 2.939757419 2.09628505 2.09715533 2.044071663 2.796291629 1 14.28738098 -10.17890755 6.387010564 0.99999299 2.230555267 0.229561367 0.670806223 6.33E-05 8.13E-06 0.613700514 0.148843392 6.62E-11 10.17890755 1.230562277 GSIS(ph)EDELITAIK ddPTM_HeLa_A485_30min_R1 1 GSISEDELITAIK 13 0 Q2NKQ5;Q16799 Q2NKQ5 RTN1 Reticulon;Reticulon-1 1 0 GS(0.002)IS(0.998)EDELITAIK 150.12 6.19E-08 17255000 49214 43422 32005 44295 47564 39929 47744 45014 40377 72013 TRUE FALSE FALSE 60161.48451 48499.82518 43844.98134 46714.72369 42828.36115 42019.6207 37543.10437 33974.24592 48480.29354 54061.4844 1.112834492 0.897123446 0.811020671 0.864103607 0.792215782 0.77725614 0.69445197 0.628437164 0.89676216 1 15.7223135 -1.000000692 0.760590402 0.778266694 65.3867923 0.454351336 0.098982345 329.8947084 1.354444887 0.035577925 36568.16299 0.099999841 1.000000692 64.60852561 GSIS(ph)EDELITAIK ddPTM_HeLa_A486_30min_R1 1 GSISEDELITAIK 13 0 Q2NKQ5;Q16799 Q2NKQ5 RTN1 Reticulon;Reticulon-1 1 0 GS(0.002)IS(0.998)EDELITAIK 151.74 5.17E-08 9574600 37261 46271 26013 13523 43189 37124 47596 41726 35314 42774 TRUE FALSE FALSE 34649.19632 42604.31744 36085.93025 31482.22741 37771.8329 32544.01833 35686.97738 32225.90067 38375.04595 32063.11199 1.080656061 1.328764265 1.125465621 0.981883088 1.178046377 1.014998742 1.113022884 1.005077133 1.19685968 1 14.96862684 -4.991692288 24.75174483 1.072621439 1.210311405 0.263102472 0.089673493 195.8038181 583359.4902 0.021340449 0.04430312 1.02E-05 4.991692288 0.137689966 GSIS(ph)TPNS(ph)PVK ddPTM_HeLa_A485_30min_R1 3 GSISTPNSPVK 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 2 0 GSIS(0.962)T(0.039)PNS(1)PVK;GSIS(0.996)T(0.007)PNS(0.996)PVK;GSIS(0.941)T(0.075)PNS(0.984)PVK ;; 153.81 9.11E-07 1261440000 2774080 2616880 2275350 3929700 3412490 2856560 3931350 3520840 2658180 5104600 TRUE FALSE FALSE 3391164.526 2922901.352 3117096.65 4144369.56 3072730.514 3006125.065 3091384.956 2657348.47 3191652.344 3832117.163 0.884932371 0.762737993 0.813413713 1.081482999 0.801836265 0.784455416 0.806704186 0.693441342 0.832869197 1 21.86971024 GSIS(ph)TPNS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 GSISTPNSPVK 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 2 0 GSIS(0.968)T(0.032)PNS(1)PVK 189.23 1.97E-10 583530000 1913500 1965600 1125900 834760 1778200 2077000 2541700 2365300 1571900 2664200 TRUE FALSE FALSE 1779373.531 1809838.697 1561878.633 1943363.466 1555161.575 1820760.857 1905739.777 1826772.824 1708153.558 1997066.979 0.890993417 0.906248371 0.782086254 0.973108808 0.778722793 0.911717472 0.954269334 0.91472787 0.855331131 1 20.92945129 -6.502035467 24.75717871 0.925264276 0.867268131 0.191920909 0.063094539 1228.683978 1459406.343 0.021282867 0.01855443 3.15E-07 6.502035467 -0.057996145 GSISTPNS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 GSISTPNSPVK 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 GSIS(0.002)T(0.012)PNS(0.986)PVK 85.672 0.0035238 194530000 224760 204100 182130 285320 302830 248450 328010 316160 240020 461410 TRUE FALSE FALSE 274757.0866 227967.7196 249507.4661 300906.3091 272679.1819 261458.4578 257927.9839 238621.2643 288189.8124 346388.9786 0.793203894 0.658126366 0.72031006 0.868694813 0.787205133 0.754811712 0.744619488 0.688882381 0.831983204 1 18.4020335 -8.05115147 6.38416315 0.999987668 0.752964435 0.652411432 0.055171311 0.26205556 31.14653222 0.056226404 0.014577886 8.89E-09 8.05115147 -0.247023233 GSISTPNS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 GSISTPNSPVK 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 GSIST(0.007)PNS(0.992)PVK 122.64 0.00027343 0 658980 568900 329330 251910 561150 613830 650640 656550 453770 911470 TRUE FALSE FALSE 612788.905 523818.2921 456855.3958 586459.2108 490765.3345 538101.8956 487842.9902 507067.8974 493103.149 683231.9793 0.896897282 0.76667707 0.668668051 0.858360306 0.718299713 0.787583005 0.714022477 0.742160661 0.721721412 1 19.38201598 -10.20259945 5.285959216 1.000014558 0.76114533 0.537558037 0.065674893 1.09E-05 1.64E-06 0.061460117 0.01490536 6.27E-11 10.20259945 -0.238869228 GSK(ac)K(ac)AVTK ddPTM_HeLa_A485_30min_R1 2 GSKKAVTK 8 2 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; GSK(1)K(1)AVTK;GSK(1)K(1)AVTK 115.78 0.0067704 58125000 10785.7 12696.7 20727 15917.7 31598 34600 70198 98769 119735 234373 FALSE TRUE FALSE 13184.94175 14181.46862 28394.77982 16787.24365 28451.99217 36411.6025 55199.62384 74545.74789 143764.7162 175948.1244 0.074936529 0.080600283 0.161381543 0.095410188 0.161706709 0.206945102 0.313726697 0.423680264 0.817085813 1 17.42479061 -7.637176037 0.963883696 1.018598713 0.114215721 0.978085785 0.045609401 0.065166202 0.120309176 0.041794013 0.015124988 2.31E-08 7.637176037 -0.904382992 down GSK(ac)K(ac)AVTK ddPTM_HeLa_A486_30min_R1 2 GSKKAVTK 8 2 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; GSK(1)K(1)AVTK;GSK(1)K(1)AVTK 127.76 0.0030002 225356000 126456 234430 201089 79007 278350 248980 253000 240730 263190 230100 FALSE TRUE FALSE 117592.0874 215852.913 278956.0462 183932.2888 243436.7475 218263.379 189696.724 185921.0341 286003.5211 172481.4623 0.681766526 1.251455722 1.617310304 1.066388737 1.411379195 1.26543094 1.099809345 1.077918935 1.658169622 1 17.39608179 -4.264802487 6.169025677 1.278570192 0.668048973 0.399453237 0.217173549 0.117939032 23.71791744 0.051809029 0.30397736 5.43E-05 4.264802487 -0.610521218 GSK(ac)K(ac)AVTK(ac)AQK ddPTM_HeLa_A485_30min_R1 2 GSKKAVTKAQK 11 3 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; GSK(1)K(1)AVTK(1)AQK;GSK(1)K(1)AVTK(1)AQK 171.32 2.27E-08 100357000 8827.2 8956.2 10606.9 15728.4 21035.1 42842 99558 146377 241420 533360 FALSE TRUE FALSE 10790.78019 10003.54968 14530.8337 16587.60267 18940.77159 45085.14087 78286.61999 110477.8112 289870.7796 400403.1678 0.026949787 0.024983693 0.036290506 0.041427251 0.04730425 0.112599361 0.195519482 0.275916427 0.723947268 1 18.61109386 -7.786609478 1.161185484 1.013106822 0.044357448 0.984660856 0.039945945 0.047453375 0.134248087 0.037374526 0.012221189 1.63E-08 7.786609478 -0.968749374 down GSK(ac)K(ac)AVTK(ac)AQK ddPTM_HeLa_A486_30min_R1 2 GSKKAVTKAQK 11 3 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; GSK(1)K(1)AVTK(1)AQK;GSK(1)K(1)AVTK(1)AQK 197.25 2.05E-19 406130000 279940 500560 397170 165987 614970 624200 610840 581810 602220 553250 FALSE TRUE FALSE 260317.6516 460893.8026 550964.8606 386426.1245 537834.7282 547192.5504 458001.3712 449344.5638 654420.9145 414712.5989 0.627706157 1.111357127 1.328546232 0.931792585 1.296885432 1.319450028 1.104382583 1.08350835 1.57801069 1 18.66175235 -4.27892508 3.59133697 1.203373663 0.571851667 0.482416583 0.178393246 0.214659928 5.053123379 0.043131504 0.355697483 5.26E-05 4.27892508 -0.631521995 GSKPGGVGTGLGGSSGTET(ph)LEK ddPTM_HeLa_A485_30min_R1 1 GSKPGGVGTGLGGSSGTETLEK 22 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 GSKPGGVGTGLGGS(0.03)S(0.17)GT(0.261)ET(0.538)LEK 72.073 0.0076226 235660000 116970 75395 48152 124990 112190 88708 136680 140370 60181 135920 TRUE FALSE FALSE 142989.573 84211.7894 65965.42857 131817.8872 101019.9697 93352.61371 107477.2014 105944.0374 72258.77469 102037.6454 1.401341361 0.825301182 0.646481289 1.291855439 0.990026468 0.914884044 1.053309305 1.038283831 0.708157998 1 16.63874199 -7.727665475 24.98730468 0.854078213 1.006876925 0.08599593 0.2131067 437.6436345 323787.414 0.141853182 0.053609072 1.87E-08 7.727665475 0.152798712 GSKPGGVGTGLGGSSGTET(ph)LEK ddPTM_HeLa_A486_30min_R1 2 GSKPGGVGTGLGGSSGTETLEK 22 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 GSKPGGVGTGLGGS(0.003)S(0.033)GT(0.142)ET(0.822)LEK;GSKPGGVGTGLGGSS(0.015)GT(0.139)ET(0.846)LEK ; 158.06 2.85E-10 146210000 124111 119427 68113 87423 104752 149110 188096 181661 99329 187258 TRUE FALSE FALSE 115411.4598 109963.1696 94488.17773 203525.1621 91613.02739 130714.3242 141032.3913 140300.7559 107938.9177 140367.378 0.822209986 0.783395481 0.673149126 1.449946313 0.652666088 0.931230077 1.004737663 0.999525374 0.768974382 1 17.09884816 GSKPS(ph)PLSVK ddPTM_HeLa_A485_30min_R1 2 GSKPSPLSVK 10 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 GS(0.006)KPS(0.994)PLSVK;GS(0.003)KPS(0.975)PLS(0.023)VK ; 128.68 4.44E-05 4305720000 8057800 7601666.1 5240098.7 9689039.6 9089667 8921406.5 12608605.4 12173837 7243042.6 12753655 TRUE FALSE FALSE 9850229.811 8490614.825 7178629.268 10218327.3 8184667.838 9388517.549 9914673.853 9188184.388 8696654.813 9574403.522 1.028808718 0.886803528 0.749773002 1.067254715 0.85484885 0.980585112 1.035539585 0.959661285 0.908323405 1 23.19075118 -6.31497074 24.54328803 0.977970619 0.914794261 0.102280797 0.08766112 634.0881861 290717.508 0.030873706 0.027228075 4.84E-07 6.31497074 -0.063176358 GSKPS(ph)PLSVK ddPTM_HeLa_A486_30min_R1 1 GSKPSPLSVK 10 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 GS(0.002)KPS(0.998)PLS(0.001)VK 108.56 0.010973 456390000 636530 565140 298630 238310 614900 690090 722860 698240 474340 816400 TRUE FALSE FALSE 591912.534 520356.2482 414267.5336 554797.7235 537773.5083 604953.7121 541992.7824 539265.9945 515456.1731 611968.1261 0.967227718 0.850299592 0.676942991 0.906579444 0.87876065 0.988537942 0.885655248 0.88119948 0.842292517 1 19.22309699 -5.449916419 24.99983048 0.907734525 0.82643604 0.172596036 0.080059849 255.1709885 87430.62468 0.022861561 0.033909162 3.55E-06 5.449916419 -0.081298485 GSKS(ph)PSPRPNMPVR ddPTM_HeLa_A485_30min_R1 2 GSKSPSPRPNMPVR 14 2 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 GS(0.315)KS(0.675)PS(0.01)PRPNMPVR;GS(0.164)KS(0.823)PS(0.013)PRPNMPVR ; 117.4 6.19E-05 901540000 928180 1120180 1019190 1132890 1344650 1221820 1512520 1530760 1082340 1513180 TRUE FALSE FALSE 1134650.439 1251175.307 1396230.793 1194776.912 1210771.925 1285792.606 1189357.746 1155338.71 1299555.71 1135972.074 0.99883656 1.101413789 1.229106617 1.051766095 1.065846558 1.131887513 1.046995585 1.017048514 1.14400322 1 20.11549594 -6.783984692 24.94442798 1.053432518 1.099304753 0.096678393 0.066189999 598.2508995 661906.3965 0.028043424 0.018921747 1.64E-07 6.783984692 0.045872235 GSKS(ph)PSPRPNMPVR ddPTM_HeLa_A486_30min_R1 2 GSKSPSPRPNMPVR 14 2 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 GS(0.212)KS(0.725)PS(0.063)PRPNMPVR;GS(0.092)KS(0.774)PS(0.134)PRPNMPVR ; 89.866 0.00063122 970890000 1126970 1249050 926850 454460 1368510 1206270 1391710 1493230 1019790 1371360 TRUE FALSE FALSE 1047975.223 1150070.729 1285751.142 1058005.847 1196858.715 1057452.672 1043489.438 1153254.126 1108186.218 1027962.53 1.01946831 1.118786625 1.250776273 1.029226082 1.164301889 1.028687954 1.015104547 1.121883427 1.078041452 1 19.97135625 -6.272235731 24.87954286 1.054258757 1.119248141 0.191545699 0.069035741 1285.052817 2961315.002 0.024368947 0.021691425 5.34E-07 6.272235731 0.064989383 GSLAEAVGS(ph)PPPAATPTPTPPTR ddPTM_HeLa_A486_30min_R1 3 GSLAEAVGSPPPAATPTPTPPTR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 GSLAEAVGS(0.999)PPPAAT(0.001)PTPTPPTR;GSLAEAVGS(1)PPPAATPTPTPPTR;GSLAEAVGS(1)PPPAATPTPTPPTR ;; 211.11 2.88E-29 387378000 398900 418250 383330 131651 523970 379510 449450 476560 368370 409720 TRUE FALSE FALSE 370939.1699 385106.3468 531765.6419 306490.1813 458248.7968 332689.9148 336992.8562 368057.6912 400300.6082 307123.4452 1.207785259 1.253913867 1.731439427 0.99793808 1.492067128 1.08324493 1.097255392 1.198403108 1.303386682 1 18.22845912 -6.280458352 24.88614576 1.146408049 1.335151272 0.210684411 0.193232484 1354.291397 1772071.815 0.066348932 0.058614516 5.24E-07 6.280458352 0.188743224 GSLAS(ph)LDS(ph)LR ddPTM_HeLa_A485_30min_R1 1 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 2 0 GSLAS(1)LDS(1)LR 91.024 0.0064467 142200000 287080 293600 313400 252220 339300 327590 377530 386690 262490 316950 TRUE FALSE FALSE 350939.9556 327933.966 429339.7017 265998.1399 305518.1006 344742.1058 296867.6314 291853.6712 315169.3353 237940.198 1.474908227 1.37822011 1.804401716 1.117920142 1.284012131 1.448860296 1.247656486 1.226584132 1.324573729 1 17.8602395 -7.526044512 0.048280618 1.09E-09 2.518268724 0.406694091 0.160835882 42.26302605 2.043943815 52.88217188 51.77823015 2.98E-08 7.526044512 2.518268723 GSLAS(ph)LDS(ph)LR ddPTM_HeLa_A486_30min_R1 1 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 2 0 GSLAS(1)LDS(1)LR 106.58 0.0019016 429580000 360720 455300 457780 169730 551860 429530 474920 494420 425910 471890 TRUE FALSE FALSE 335435.3908 419220.3698 635044.6758 395140.0177 482640.5729 376538.9557 356089.9928 381851.3591 462828.2217 353725.6725 0.948292467 1.185156754 1.795302759 1.117080405 1.36444881 1.064494282 1.006684051 1.079512709 1.308438312 1 18.4322714 -6.2687462 24.42533675 1.09147404 1.296021307 0.156406116 0.219702473 806.8041664 2696986.564 0.078552595 0.070745291 5.39E-07 6.2687462 0.204547267 GSLAS(ph)LDS(ph)LRK ddPTM_HeLa_A485_30min_R1 4 GSLASLDSLRK 11 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 2 0 GS(0.103)LAS(0.897)LDS(1)LRK;GS(0.006)LAS(0.994)LDS(1)LRK;GS(0.008)LAS(0.992)LDS(1)LRK;GS(0.092)LAS(0.908)LDS(1)LRK ;;; 84.753 0.0018259 1286650000 3045900 2878540 2385170 3205410 3248500 3115540 4091080 3809920 2399280 4519310 TRUE FALSE FALSE 3723449.947 3215160.213 3267543.638 3380513.432 2925067.934 3278664.857 3216987.337 2875531.146 2880793.488 3392729.189 1.097479268 0.947661907 0.963101815 0.996399431 0.8621578 0.966379771 0.948200448 0.847556933 0.849107998 1 21.69401485 -1 0.578800019 0.911071303 10.1628567 0.456122846 0.054789142 142.3853106 1.188558304 0.025875448 1654.579725 0.1 1 9.251785394 GSLAS(ph)LDS(ph)LRK ddPTM_HeLa_A486_30min_R1 7 GSLASLDSLRK 11 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 2 0 GS(0.437)LAS(0.563)LDS(1)LRK;GS(0.006)LAS(0.994)LDS(1)LRK;GS(0.463)LAS(0.537)LDS(1)LRK;GS(0.144)LAS(0.874)LDS(0.982)LRK;GS(0.425)LAS(0.575)LDS(1)LRK;GS(0.113)LAS(0.887)LDS(1)LRK;GS(0.097)LAS(0.903)LDS(1)LRK ;;;;;; 109.79 0.00025345 2026500000 3972110 4626900 3423610 2247560 5110040 5219690 6385690 5903760 4135580 6273100 TRUE FALSE FALSE 3693685.601 4260247.593 4749323.479 5232433.265 4469091.134 4575737.718 4787922.821 4559602.726 4494055.404 4702274.929 0.785510345 0.905997131 1.010005487 1.112745074 0.950410429 0.973090214 1.01821414 0.969658898 0.955719406 1 22.16492746 -4.450360543 2.653290575 0.99942933 0.779606327 0.693436072 0.044258767 0.195016519 2.284212139 0.012328434 0.07745804 3.55E-05 4.450360543 -0.219823003 GSLAS(ph)LDSLR ddPTM_HeLa_A485_30min_R1 4 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GSLAS(1)LDSLR;GSLAS(1)LDSLR;GSLAS(1)LDSLR;GSLAS(1)LDSLR ;;; 201.56 8.70E-14 6594120000 993170 1328330 1388100 1006670 1381240 1334920 1277220 1456160 1265140 1555230 TRUE FALSE FALSE 1214097.24 1483666.639 1901615.954 1061661.833 1243718.896 1404814.347 1004331.513 1099034.477 1519041.993 1167539.783 1.039876549 1.270763241 1.628737608 0.909315339 1.065247552 1.203226106 0.860211813 0.941325078 1.301062298 1 20.15504028 -5.291965435 24.99936221 1.037965631 1.308889775 0.320163429 0.182298601 795.6598471 651605.1181 0.051808463 0.076853773 5.11E-06 5.291965435 0.270924144 GSLAS(ph)LDSLR ddPTM_HeLa_A486_30min_R1 6 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GSLAS(0.999)LDS(0.001)LR;GSLAS(1)LDSLR;GSLAS(1)LDSLR;GSLAS(0.999)LDS(0.001)LR;GS(0.002)LAS(0.998)LDSLR;GSLAS(1)LDSLR ;;;;; 215.79 8.01E-17 7164217000 3143560 3314240 3241190 984499 4514970 3040500 3154750 3305920 3388030 3612290 TRUE FALSE FALSE 2923212.677 3051607.552 4496265.57 2291963.426 3948660.362 2665394.024 2365398.182 2553234.184 3681707.168 2707749.072 1.079572959 1.126990526 1.660517814 0.84644602 1.458281494 0.984357838 0.873566243 0.942936039 1.359692893 1 21.36866262 -6.31515105 24.99771358 1.01863497 1.2305217 0.152604527 0.237151341 604.5737133 281370.1134 0.081422787 0.071808181 4.84E-07 6.31515105 0.21188673 GSLAS(ph)LDSLRK ddPTM_HeLa_A485_30min_R1 2 GSLASLDSLRK 11 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GS(0.004)LAS(0.996)LDSLRK;GS(0.055)LAS(0.945)LDSLRK ; 93.228 0.0013763 440690000 417180 484580 390830 459740 537690 540150 519720 585360 442260 732100 TRUE FALSE FALSE 509980.2517 541247.4157 535414.2808 484854.4321 484155.6957 568431.4188 408677.5763 441799.5422 531017.5254 549600.9433 0.927910074 0.98480074 0.97418734 0.882193595 0.880922243 1.034262087 0.743589656 0.803855138 0.966187434 1 19.06802495 -5.261604317 24.92410172 0.891485815 0.964549523 0.091898555 0.083268552 30.07515717 4545173.567 0.023449414 0.037417814 5.48E-06 5.261604317 0.073063708 GSLAS(ph)LDSLRK ddPTM_HeLa_A486_30min_R1 2 GSLASLDSLRK 11 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GS(0.034)LAS(0.966)LDSLRK;GS(0.052)LAS(0.948)LDSLRK ; 96.707 0.0010899 366290000 492500 481440 400050 170442 596400 467110 486800 527700 419640 642760 TRUE FALSE FALSE 457978.2933 443288.941 554960.0737 396797.5897 521593.9508 409482.7174 364997.4912 407554.2296 456014.7331 481808.7123 0.950539668 0.920051734 1.151826564 0.823558353 1.082574759 0.849886494 0.757556852 0.845883894 0.946464274 1 18.87810096 -6.294144563 24.75508651 0.862675931 0.982282788 0.199057396 0.103078274 836.8778399 633443.6918 0.035069037 0.030930603 5.08E-07 6.294144563 0.119606857 GSLASLDS(ph)LR ddPTM_HeLa_A485_30min_R1 2 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GSLASLDS(1)LR;GSLASLDS(1)LR ; 170.4 2.71E-07 256060000 291960 327190 325530 234515 325160 327410 401850 424760 273330 330160 TRUE FALSE FALSE 356905.4947 365452.0243 445957.0934 247325.9606 292785.9287 344552.6813 315991.4647 320586.944 328184.8239 247857.1881 1.439964269 1.474445938 1.799250192 0.997856719 1.181268661 1.390125838 1.274893285 1.29343412 1.324088385 1 17.91914957 -1 0.071560536 0.726282262 2.756217707 0.310217934 0.185891034 324.622746 1.715923253 8.310542721 66.1518518 0.1 1 2.029935445 GSLASLDS(ph)LR ddPTM_HeLa_A486_30min_R1 3 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GSLASLDS(1)LR;GSLASLDS(1)LR;GSLASLDS(1)LR ;; 158.3 1.15E-06 325248000 306110 350039 327830 114178 405237 328416 367733 410587 297762 338347 TRUE FALSE FALSE 284653.2698 322300.6348 454774.5556 265812.1542 354408.3968 287899.373 275722.3139 317105.3032 323572.2499 253622.7089 1.1223493 1.270787763 1.793114495 1.048061332 1.39738432 1.135148245 1.08713575 1.250303273 1.275801569 1 17.9523244 -5.979858315 1.55954916 1.165398725 1.354504843 0.137788968 0.202510856 0.810786473 4.03263792 0.080698269 0.09124206 1.05E-06 5.979858315 0.189106118 GSLASLDS(ph)LRK ddPTM_HeLa_A485_30min_R1 4 GSLASLDSLRK 11 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GSLASLDS(1)LRK;GSLASLDS(1)LRK;GSLAS(0.001)LDS(0.999)LRK;GSLASLDS(1)LRK ;;; 191.06 4.23E-11 3415810000 3382360 2725110 2145770 3258480 3132080 3282940 4802120 4566830 2570350 5032960 TRUE FALSE FALSE 4134754.313 3043787.909 2939579.616 3436482.511 2820239.118 3454829.662 3776107.832 3446807.782 3086195.668 3778335.697 1.094332173 0.805589591 0.778009116 0.909522813 0.746423649 0.914378695 0.999410358 0.912255569 0.816813517 1 21.84931946 -6.499422989 24.57116617 0.929391657 0.857777794 0.083354167 0.101477858 1509.289277 1581064.501 0.035622054 0.031206715 3.17E-07 6.499422989 -0.071613863 GSLASLDS(ph)LRK ddPTM_HeLa_A486_30min_R1 5 GSLASLDSLRK 11 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GSLASLDS(1)LRK;GSLASLDS(1)LRK;GSLAS(0.018)LDS(0.982)LRK;GSLASLDS(1)LRK;GSLASLDS(1)LRK ;;;; 197.38 8.41E-15 3271325000 2406780 2563232 1651664 1249969 2621436 2920090 3580190 3560430 2000690 3316690 TRUE FALSE FALSE 2238077.151 2360112.161 2291232.534 2909991.002 2292631.053 2559838.985 2684388.595 2749797.813 2174111.42 2486169.236 0.900211103 0.949296664 0.92159154 1.170471809 0.922154059 1.029631832 1.079728828 1.106038066 0.874482472 1 21.24549307 GSLDKPDSFMEETNSQDHRPPS(ph)GAQKPAPSPEPCMPNTALLIK ddPTM_HeLa_A485_30min_R1 1 GSLDKPDSFMEETNSQDHRPPSGAQKPAPSPEPCMPNTALLIK 43 3 Q9UGR2 Q9UGR2 ZC3H7B Zinc finger CCCH domain-containing protein 7B 1 0 GS(0.079)LDKPDS(0.07)FMEET(0.07)NS(0.07)QDHRPPS(0.356)GAQKPAPS(0.356)PEPCMPNTALLIK 53.386 0.0051133 744580000 188950 130100 99294 242630 228800 189160 305500 247430 167880 380660 TRUE FALSE FALSE 230981.2756 145314.0633 136026.9826 255884.2625 206019.8686 199064.1251 240227.4293 186747.4045 201571.9761 285768.4675 0.808281185 0.508502791 0.476004171 0.895425114 0.720932825 0.696592339 0.840636587 0.65349199 0.705368153 1 18.12448721 -14 0.157870768 2.092335658 0.614781863 0.342575043 0.12557584 157.7585131 1.439917742 54.17680084 0.574838053 1.00E-14 14 -1.477553794 GSLEKGS(ph)PEDKEAK ddPTM_HeLa_A485_30min_R1 4 GSLEKGSPEDKEAK 14 2 P0DN79;P35520;P35520-2;C9JMA6 P0DN79 CBS Cystathionine beta-synthase 1 0 GS(0.014)LEKGS(0.986)PEDKEAK;GS(0.06)LEKGS(0.94)PEDKEAK;GS(0.013)LEKGS(0.987)PEDKEAK;GS(0.001)LEKGS(0.999)PEDKEAK ;;; 102.58 0.00023044 1378010000 1786300 1685810 1188850 4200040 1870730 1854790 3424790 2917930 1371590 5845410 TRUE FALSE FALSE 2183656.272 1882950.815 1628655.087 4429477.55 1684473.553 1951903.936 2693055.639 2202303.092 1646855.532 4388256.864 0.497613595 0.429088559 0.371139415 1.009393408 0.383859379 0.44480166 0.61369599 0.501862849 0.375286949 1 22.06521654 -10.21690611 4.447369964 1.000140998 0.51864902 0.395479009 0.180150706 245324264 113.4893918 397921.9114 0.043389711 6.07E-11 10.21690611 -0.481491978 GSLEKGS(ph)PEDKEAK ddPTM_HeLa_A486_30min_R1 3 GSLEKGSPEDKEAK 14 2 P0DN79;P35520;P35520-2;C9JMA6 P0DN79 CBS Cystathionine beta-synthase 1 0 GS(0.127)LEKGS(0.873)PEDKEAK;GS(0.001)LEKGS(0.999)PEDKEAK;GS(0.007)LEKGS(0.993)PEDKEAK ;; 122.22 2.08E-05 1465430000 1993660 1564230 638270 1897240 1367260 2462170 3815040 3237070 1190260 5086580 TRUE FALSE FALSE 1853914.729 1440274.718 885425.2375 4416870.601 1195765.502 2158412.499 2860476.641 2500059.826 1293432.695 3812867.26 0.486225878 0.377740587 0.232220315 1.158411846 0.3136132 0.566086452 0.750216686 0.655690234 0.339228357 1 21.86244488 -14 0.186587716 2.800291261 0.469015516 0.211276362 0.258132321 222.9967584 2.169912141 150.4857891 0.735809283 1.00E-14 14 -2.331275745 GSLGS(ph)QGAKDEPEEELQK ddPTM_HeLa_A485_30min_R1 1 GSLGSQGAKDEPEEELQK 18 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 GS(0.001)LGS(0.999)QGAKDEPEEELQK 126.9 5.39E-06 273280000 119160 142250 118640 270480 167700 179970 280730 264320 135380 371690 TRUE FALSE FALSE 145666.7309 158884.9001 162529.873 285255.6375 151003.1992 189392.9509 220749.7421 199495.1056 162549.5242 279034.5234 0.522038381 0.56940947 0.582472273 1.022295141 0.541163141 0.678743793 0.791119821 0.714947753 0.582542698 1 18.0900841 -14 0.16478077 2.162619184 0.596402604 0.326797623 0.143154156 170.7596754 1.589006091 65.68992177 0.577812582 1.00E-14 14 -1.56621658 GSLGS(ph)QGAKDEPEEELQK ddPTM_HeLa_A486_30min_R1 2 GSLGSQGAKDEPEEELQK 18 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 GS(0.004)LGS(0.996)QGAKDEPEEELQK;GSLGS(1)QGAKDEPEEELQK ; 245.41 7.18E-46 442640000 366250 333884 167129 298537 419630 519350 729090 622520 301855 767480 TRUE FALSE FALSE 340577.7663 307425.8159 231845.8247 695009.2232 366996.0925 455277.8774 546663.9705 480785.7855 328020.0344 575298.0125 0.592002334 0.534376635 0.403001261 1.208085563 0.637923449 0.791377456 0.950227462 0.835716055 0.570174114 1 19.13394996 -5.224974623 24.99968587 0.84149003 0.512251686 0.44872576 0.175420445 553.7031259 379609.8745 0.046140444 0.079914334 5.96E-06 5.224974623 -0.329238344 GSLLLDGAGAGGAGGS(ph)RPCSNR ddPTM_HeLa_A485_30min_R1 1 GSLLLDGAGAGGAGGSRPCSNR 22 1 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 GSLLLDGAGAGGAGGS(0.997)RPCS(0.003)NR 55.051 0.014506 150420000 61554 102290 104550 61853 116580 98584 86270 116150 98070 89842 TRUE FALSE FALSE 75246.47494 114251.9257 143227.3957 65231.87277 104972.8859 103745.7058 67837.70974 87664.03038 117751.7494 67446.04282 1.115654408 1.693975227 2.123584864 0.967171239 1.556397996 1.538203006 1.005807115 1.299765364 1.745865947 1 16.04144618 -5.274684432 24.99892731 1.322491921 1.649361924 0.178050596 0.335152223 1381.881292 2608182.118 0.094372881 0.140895769 5.31E-06 5.274684432 0.326870002 GSLLPTS(ph)PR ddPTM_HeLa_A485_30min_R1 2 GSLLPTSPR 9 0 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 GSLLPTS(1)PR;GSLLPT(0.026)S(0.974)PR ; 145.41 9.94E-05 479040000 728620 1117760 1152680 795300 1276590 1035550 1113660 1276760 1016060 1079080 TRUE FALSE FALSE 890699.0053 1248472.309 1579104.299 838745.2252 1149488.217 1089769.797 875717.4432 963632.6081 1219973.922 810085.215 1.099512729 1.541161702 1.949306406 1.035379007 1.418971975 1.345253285 1.081018919 1.189544742 1.50598221 1 19.62771415 -5.293975652 24.99489143 1.240134996 1.531110902 0.243166813 0.245446554 938.0079576 720590.7661 0.06914676 0.102569796 5.08E-06 5.293975652 0.290975906 GSLLPTS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GSLLPTSPR 9 0 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 GSLLPT(0.001)S(0.999)PR;GSLLPT(0.312)S(0.688)PR ; 120.32 0.00044736 313510000 650790 792110 780030 217940 926770 681920 754770 774200 677250 707900 TRUE FALSE FALSE 605172.9817 729340.3188 1082078.506 507375.3341 810525.8648 597791.6437 565918.5629 597931.5607 735954.5753 530637.2323 1.140464605 1.37446126 2.03920577 0.956162333 1.527457584 1.126554277 1.066488607 1.126817954 1.386926002 1 19.01736638 -5.982537052 1.391797818 1.148233149 1.453174298 0.159403406 0.283037389 0.766224321 3.064139074 0.117605636 0.134239008 1.04E-06 5.982537052 0.304941149 GSLLTILGS(ph)PSPER ddPTM_HeLa_A485_30min_R1 1 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 GSLLT(0.001)ILGS(0.961)PS(0.038)PER 136.39 3.56E-05 0 27745 41185 37770 21737 49109 35251 41186 44762 36941 32295 TRUE FALSE FALSE 33916.77953 46001.22749 51742.69474 22924.43727 44219.53553 37096.68785 32386.27464 33784.04932 44354.71986 24244.45085 1.398950207 1.897392017 2.134207744 0.945553992 1.823903367 1.530110461 1.335822158 1.393475543 1.829479254 1 14.56536696 -12.02711447 0.16817595 4.88E-13 1.751886227 0.213117557 0.328584307 97.39941839 1.684838916 37.39438697 1.346221734 9.39E-13 12.02711447 1.751886227 GSLLTILGS(ph)PSPER ddPTM_HeLa_A486_30min_R1 1 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 GSLLT(0.046)ILGS(0.928)PS(0.025)PER 85.909 0.0014455 0 33607 41883 45191 11769 51476 36658 38818 43173 37813 34302 TRUE FALSE FALSE 31251.32285 38564.03854 62690.16546 27398.82677 45019.40009 32135.50867 29105.32583 33343.45036 41090.66129 25712.55593 1.215410982 1.499813502 2.438114889 1.065581611 1.750872228 1.249798299 1.131949928 1.29677697 1.598077663 1 14.65018541 -6.275945404 23.74730297 1.266158415 1.606271642 0.172424174 0.370074508 786.8335985 1288092.258 0.129997994 0.115227713 5.30E-07 6.275945404 0.340113227 GSLLTILGSPS(ph)PER ddPTM_HeLa_A485_30min_R1 3 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 GSLLTILGSPS(1)PER;GSLLTILGSPS(1)PER;GSLLTILGS(0.034)PS(0.966)PER ;; 177.58 4.01E-13 386824000 216363 293236 309719 200284 331066 283787 322304 368893 263544 264951 TRUE FALSE FALSE 264492.2029 327527.3994 424296.9466 211225.0078 298103.9066 298645.6485 253441.1174 278421.4133 316434.8634 198903.5918 1.329750763 1.646664077 2.133178908 1.061946674 1.498735664 1.501459304 1.274190753 1.399780722 1.590895673 1 17.6017098 -12.37153388 0.143904833 8.37E-15 1.686258515 0.238127348 0.266307373 117.8125613 1.601378523 37.75829404 1.693476355 4.25E-13 12.37153388 1.686258515 GSLLTILGSPS(ph)PER ddPTM_HeLa_A486_30min_R1 3 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 GSLLTILGSPS(1)PER;GSLLTILGSPS(1)PER;GSLLTILGSPS(1)PER ;; 196.18 1.19E-18 369239000 268299 323139 294830 111370 381009 277641 322941 345742 257021 322293 TRUE FALSE FALSE 249492.6256 297532.2888 408996.0718 259274.9883 333219.2985 243388.4763 242137.7461 267024.0941 279299.7872 241588.735 1.032716304 1.231565241 1.692943472 1.073208104 1.379283262 1.007449607 1.002272503 1.105283713 1.15609607 1 17.88219366 -6.267319154 24.84610412 1.057553862 1.290381444 0.295676269 0.175454349 593.5030764 2507951.206 0.061700515 0.05588073 5.40E-07 6.267319154 0.232827581 GSLPQLVS(ph)PIVSR ddPTM_HeLa_A485_30min_R1 4 GSLPQLVSPIVSR 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 GSLPQLVS(0.862)PIVS(0.138)R;GSLPQLVS(1)PIVSR;GSLPQLVS(1)PIVSR;GSLPQLVS(1)PIVSR ;;; 162.76 8.56E-12 1121110000 709707 948217 955845 767680 1045109 925470 977160 1197170 886071 1017280 TRUE FALSE FALSE 867578.8737 1059102.73 1309451.842 809616.4145 941054.2784 973926.1782 768381.7833 903562.1804 1063897.322 763690.8177 1.136034182 1.386821349 1.714636095 1.060136374 1.232245114 1.27528858 1.006142493 1.183151819 1.393099534 1 19.54262915 -5.300597862 24.98844716 1.17279249 1.409930207 0.299465462 0.173609424 668.8109791 426791.1186 0.049081069 0.072800129 5.00E-06 5.300597862 0.237137717 GSLPQLVS(ph)PIVSR ddPTM_HeLa_A486_30min_R1 4 GSLPQLVSPIVSR 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 GSLPQLVS(1)PIVSR;GSLPQLVS(1)PIVSR;GSLPQLVS(0.999)PIVS(0.001)R;GSLPQLVS(1)PIVSR ;;; 159.02 5.76E-09 908750000 1017320 1189220 1097180 411142 1318630 1132340 1294270 1294180 1010650 1321110 TRUE FALSE FALSE 946011.1214 1094981.876 1522037.479 957159.354 1153235.13 992643.4036 970429.9566 999523.4658 1098253.956 990295.457 0.955281694 1.105712309 1.536952905 0.966539175 1.164536423 1.002370956 0.979939825 1.00931844 1.109016454 1 19.9174995 GSLQAHDTSS(ph)LPTVIMR ddPTM_HeLa_A485_30min_R1 2 GSLQAHDTSSLPTVIMR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 GSLQAHDTS(0.052)S(0.947)LPTVIMR;GSLQAHDT(0.001)S(0.075)S(0.924)LPTVIMR ; 151.42 3.13E-08 622380000 375050 610760 657630 245190 678950 471580 550250 642870 511710 391020 TRUE FALSE FALSE 458478.5786 682183.0691 900914.7033 258584.1088 611351.3541 496271.1996 432684.5924 485205.1245 614405.5033 293545.9102 1.561863282 2.323939954 3.069075984 0.880898353 2.082643065 1.690608461 1.473992917 1.652910525 2.093047397 1 18.16322663 -5.262706222 24.9999899 1.605102401 2.318857723 0.324411075 0.501939926 140.8878029 2780314.663 0.136618668 0.215951097 5.46E-06 5.262706222 0.713755322 GSLQAHDTSS(ph)LPTVIMR ddPTM_HeLa_A486_30min_R1 2 GSLQAHDTSSLPTVIMR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 GSLQAHDT(0.004)S(0.284)S(0.711)LPT(0.001)VIMR;GSLQAHDT(0.002)S(0.062)S(0.936)LPTVIMR ; 127.54 1.19E-05 574060000 437320 486660 505800 22117.7 648990 409310 478410 492890 438120 299250 TRUE FALSE FALSE 406666.1263 448095.2892 701659.3058 51491.12337 567587.6226 358813.4938 358706.7579 380669.7067 476096.5944 224315.8522 1.812917466 1.997608661 3.127996969 0.229547412 2.530305447 1.599590445 1.599114616 1.697025435 2.122438471 1 17.77517205 -11.29623114 0.199231503 6.97E-21 2.031703913 0.11214568 0.706978662 93.76733808 2.454814125 47.05424725 1.87369737 5.06E-12 11.29623114 2.031703913 GSLS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 GSLSPAR 7 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 GS(0.003)LS(0.997)PAR;GS(0.05)LS(0.95)PAR;GS(0.05)LS(0.95)PAR ;; 79.893 0.012815 963690000 758460 1102140 1202510 767270 1251140 1107810 1209400 1351260 1030870 1018720 TRUE FALSE FALSE 927176.8103 1231025.686 1647368.49 809184.0173 1126572.109 1165813.219 951001.8101 1019861.366 1237756.153 764771.8522 1.212357395 1.609663957 2.154065274 1.058072437 1.4730826 1.524393471 1.243510476 1.333549821 1.618464578 1 19.5446699 -12.43582121 0.173927021 1.68E-10 1.595713679 0.188030617 0.287360325 121.3321997 1.893779508 45.16191442 1.064808401 3.67E-13 12.43582121 1.595713679 GSLS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 GSLSPAR 7 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 GSLS(1)PAR;GS(0.003)LS(0.997)PAR ; 96.367 0.005377 2249750000 377440 471210 409530 127490 538120 385870 418800 449180 387970 405750 TRUE FALSE FALSE 350983.4051 433869.6035 568110.9836 296803.163 470623.9718 338265.2826 314011.8104 346911.5195 421599.552 304147.559 1.153990537 1.426510227 1.867879477 0.975852524 1.547354098 1.112174905 1.032432453 1.140602675 1.386167797 1 18.2144119 -6.279885285 24.08799823 1.136698003 1.399166825 0.227324898 0.239606882 812.8292637 1061447.279 0.083799067 0.07406098 5.25E-07 6.279885285 0.262468822 GSLS(ph)PGGER ddPTM_HeLa_A486_30min_R1 1 GSLSPGGER 9 0 E7EWN3;Q9C0A6-2;Q9C0A6-3;Q9C0A6;H7C1F2;H0Y3R4 E7EWN3 SETD5 SET domain-containing protein 5 1 0 GS(0.002)LS(0.998)PGGER 99.343 0.0020385 304250000 259340 260260 274170 60394 308210 249870 226780 246650 276560 221800 TRUE FALSE FALSE 241161.6052 239636.0497 380335.9665 140600.2841 269551.4279 219043.5799 170037.2454 190493.1793 300532.4435 166259.8363 1.450510301 1.44133457 2.287599789 0.84566596 1.621266048 1.317477418 1.022719913 1.145755845 1.807606997 1 17.34308017 -5.275816923 24.99523533 1.266195689 1.697966932 0.278347824 0.34901071 1088.892626 1893027.718 0.096517713 0.143899397 5.30E-06 5.275816923 0.431771243 GSLTPHPAACDKDGQTDS(ph)AAEESSSQETSK ddPTM_HeLa_A485_30min_R1 1 GSLTPHPAACDKDGQTDSAAEESSSQETSK 30 1 A0A5F9ZH11;P55201-3;P55201;P55201-2;P55201-4 A0A5F9ZH11 BRPF1 Peregrin 1 0 GSLTPHPAACDKDGQT(0.002)DS(0.998)AAEESSSQETSK 245.99 1.05E-50 251230000 169980 153880 136180 145800 221440 162280 273280 257700 170240 302530 TRUE FALSE FALSE 207791.4646 171874.9274 186558.6489 153764.6848 199392.6561 170776.7299 214891.4955 194498.6709 204405.6065 227114.8387 0.914918047 0.75677542 0.82142871 0.677034956 0.877937599 0.751939992 0.946179901 0.856389094 0.900009914 1 17.79306244 -6.765182238 24.9999996 0.913677163 0.796967309 0.421799706 0.071463513 99.99094287 667866.998 0.027783345 0.019546678 1.72E-07 6.765182238 -0.116709854 GSLTPHPAACDKDGQTDS(ph)AAEESSSQETSK ddPTM_HeLa_A486_30min_R1 1 GSLTPHPAACDKDGQTDSAAEESSSQETSK 30 1 A0A5F9ZH11;P55201-3;P55201;P55201-2;P55201-4 A0A5F9ZH11 BRPF1 Peregrin 1 0 GSLTPHPAACDKDGQT(0.36)DS(0.624)AAEES(0.006)S(0.008)S(0.002)QETSK 69.857 0.0018083 330490000 163820 144640 77429 18751 139700 170720 230550 186180 133950 158040 TRUE FALSE FALSE 152337.064 133178.1996 107411.5824 43653.27562 122177.5233 149658.3022 172863.9515 143790.8783 145560.8939 118465.7553 1.285916454 1.124191538 0.906688875 0.36848856 1.031331991 1.263304334 1.459189206 1.213775896 1.228717054 1 16.85411056 -6.009458476 24.90188222 1.247920096 0.905409879 0.269597084 0.242653472 594.3649529 1564822.95 0.083650085 0.089823541 9.78E-07 6.009458476 -0.342510217 GSNEEQVNGS(ph)PLER ddPTM_HeLa_A485_30min_R1 1 GSNEEQVNGSPLER 14 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 GSNEEQVNGS(1)PLER 167.69 2.42E-10 0 74496 112650 116820 74680 109150 100660 104020 110200 97410 99845 TRUE FALSE FALSE 91067.37819 125823.4376 160036.5793 78759.5793 98282.64275 105930.402 81795.27723 83173.27721 116959.2935 74955.47901 1.214952921 1.678642299 2.135088474 1.050751464 1.31121359 1.41324428 1.091251478 1.109635724 1.560383511 1 16.19374632 -5.286926034 24.99818699 1.230616045 1.676469504 0.387340541 0.262968293 771.2553031 756472.0589 0.074086119 0.10993505 5.17E-06 5.286926034 0.445853458 GSNEEQVNGS(ph)PLER ddPTM_HeLa_A486_30min_R1 1 GSNEEQVNGSPLER 14 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 GSNEEQVNGS(1)PLER 159.18 3.03E-07 0 172430 185030 154850 53839 168140 156210 162470 180210 140380 171990 TRUE FALSE FALSE 160343.5474 170367.5489 214812.067 125339.9129 147050.3134 136938.3984 121818.2876 139180.117 152548.2514 128922.5845 1.243719617 1.321471715 1.666209748 0.972210675 1.140609412 1.062175405 0.944894861 1.079563503 1.183254679 1 16.97614549 -5.281578322 24.94847443 1.057307021 1.401567528 0.642357777 0.121593589 484.4993386 600205.1626 0.034447694 0.051169303 5.23E-06 5.281578322 0.344260508 GSNPLDGRDS(ph)PSAGGPVGQLEPIPIPAPAS(ph)PGTRPTLK ddPTM_HeLa_A485_30min_R1 1 GSNPLDGRDSPSAGGPVGQLEPIPIPAPASPGTRPTLK 38 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 0 GSNPLDGRDS(0.975)PS(0.025)AGGPVGQLEPIPIPAPAS(0.998)PGT(0.002)RPTLK 296.26 2.14E-94 428990000 148940 114000 137620 150150 198560 154260 177580 145680 165360 203650 TRUE FALSE FALSE 182071.1892 127331.3083 188531.3648 158352.3143 178790.6692 162336.8151 139638.5823 109951.7516 198546.2352 152883.8029 1.19091222 0.832863298 1.233167682 1.03576907 1.169454617 1.061831352 0.913364134 0.71918509 1.298674101 1 17.22207604 -6.648109364 6.12256726 0.960089654 1.08562637 0.079997306 0.168172784 0.486344065 24.26949663 0.062409602 0.04794145 2.25E-07 6.648109364 0.125536715 GSNPLDGRDS(ph)PSAGGPVGQLEPIPIPAPAS(ph)PGTRPTLK ddPTM_HeLa_A486_30min_R1 2 GSNPLDGRDSPSAGGPVGQLEPIPIPAPASPGTRPTLK 38 2 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 0 GSNPLDGRDS(1)PSAGGPVGQLEPIPIPAPAS(0.996)PGT(0.004)RPTLK;GSNPLDGRDS(0.981)PS(0.019)AGGPVGQLEPIPIPAPAS(0.999)PGT(0.001)RPTLK ; 262.42 3.30E-65 1074850000 276660 273210 215089 108387 334950 278450 325560 312100 212728 326280 TRUE FALSE FALSE 257267.5627 251559.8446 298377.2211 252330.4136 292937.4477 244097.6701 244101.4446 241041.6431 231167.4343 244577.3643 1.051886234 1.028549168 1.219970711 1.031699783 1.197729187 0.998038681 0.998054114 0.985543547 0.94517101 1 17.89993136 -6.42180115 8.45355829 0.983382851 1.103787911 0.491209397 0.061511837 0.280227425 21.26381043 0.021136753 0.018608887 3.79E-07 6.42180115 0.12040506 GSNRSS(ph)LMDTADGVPVSSR ddPTM_HeLa_A485_30min_R1 1 GSNRSSLMDTADGVPVSSR 19 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 GS(0.252)NRS(0.371)S(0.377)LMDTADGVPVSSR 138.99 4.22E-07 462080000 92078 130820 110790 93527 150800 119000 152310 182880 107720 172210 TRUE FALSE FALSE 112560.4334 146118.261 151775.8314 98636.14319 135785.8225 125230.656 119767.7242 138028.3933 129338.4159 129281.2163 0.870663478 1.130235816 1.173997551 0.762958038 1.050313622 0.968668609 0.926412418 1.067660076 1.000442444 1 16.98015315 GSPAKGS(ph)PKGS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 GSPAKGSPKGSPSR 14 2 Q92817;K7EKI0 Q92817 EVPL Envoplakin 2 0 GS(0.001)PAKGS(0.999)PKGS(0.592)PS(0.408)R 97.271 0.0032624 84449000 253320 110820 92070 182370 178350 244630 344630 302900 135710 452390 TRUE FALSE FALSE 235563.5761 102038.2196 127721.9697 424566.5765 155979.68 214450.0378 258399.9289 233936.2823 147473.4521 339108.5994 0.694655271 0.300901304 0.376640315 1.252007697 0.459969698 0.632393393 0.76199757 0.689856532 0.434885616 1 18.37138784 -11.5932198 2.207108701 8.624077087 0.625990846 0.164373889 0.25518086 18434466.16 458208.0824 711671449.6 0.070744339 2.55E-12 11.5932198 -7.998086241 GSPAKGS(ph)PKGSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 GSPAKGSPKGSPSR 14 2 Q92817;K7EKI0 Q92817 EVPL Envoplakin 2 0 GS(0.004)PAKGS(0.996)PKGS(0.23)PS(0.77)R 83.229 0.011625 130520000 162530 183830 92552 216710 201270 255710 403730 576150 170290 326190 TRUE FALSE FALSE 198684.2378 205327.3194 126790.8362 228548.3186 181230.8521 269098.5802 317469.7873 434848.3091 204465.641 244876.8361 0.811363953 0.83849221 0.517773907 0.933319469 0.740089814 1.098913987 1.296446787 1.775783762 0.834973386 1 17.90169678 -6.429111814 2.829404182 1.288263824 0.76482932 0.425405566 0.250331782 0.235318704 3.664434408 0.095479762 0.080007907 3.72E-07 6.429111814 -0.523434504 GSPATS(ph)PHLGR ddPTM_HeLa_A485_30min_R1 2 GSPATSPHLGR 11 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 GSPAT(0.079)S(0.921)PHLGR;GSPAT(0.02)S(0.98)PHLGR ; 94.122 0.0006535 0 151742 243153 249573 153870 255837 236235 262270 260160 228522 215749 TRUE FALSE FALSE 185496.4844 271587.6282 341900.4383 162275.5285 230364.97 248603.8993 206233.872 196355.3521 274384.2693 161966.7449 1.145275128 1.676811054 2.110929861 1.001906463 1.422297955 1.534907055 1.273309976 1.212318938 1.694077815 1 17.3053381 -12.60324061 0.16956481 3.07E-14 1.574643178 0.148921215 0.308926206 148.6397501 2.156889226 53.69741411 1.21442865 2.49E-13 12.60324061 1.574643178 GSPDGS(ph)LQTGKPSAPK ddPTM_HeLa_A485_30min_R1 2 GSPDGSLQTGKPSAPK 16 1 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.109)PDGS(0.863)LQT(0.029)GKPSAPK;GS(0.103)PDGS(0.862)LQT(0.035)GKPSAPK ; 245.42 1.43E-40 665510000 386530 340990 261710 451260 371260 335460 479550 435290 300330 554840 TRUE FALSE FALSE 472512.265 380865.8143 358527.4197 475911.1911 334296.0508 353024.1669 377090.2249 328534.445 360603.4762 416528.5991 1.134405335 0.914380946 0.860751028 1.142565462 0.802576466 0.847538843 0.905316528 0.788744028 0.865735215 1 18.66805603 -5.789602283 24.99998111 0.858566624 0.995103074 0.334977547 0.098024971 256.4246639 227624.7351 0.029693475 0.033675664 1.62E-06 5.789602283 0.13653645 GSPDGS(ph)LQTGKPSAPKK ddPTM_HeLa_A485_30min_R1 1 GSPDGSLQTGKPSAPKK 17 2 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.133)PDGS(0.866)LQT(0.001)GKPSAPKK 99.409 0.00032961 1039900000 612720 608620 278440 623910 573610 639340 879760 948910 506690 767080 TRUE FALSE FALSE 749017.4501 679792.8147 381446.5429 657992.6235 516499.3743 672814.8538 691792.089 716188.3347 608378.0354 575861.0731 1.300691235 1.180480582 0.662393346 1.142623897 0.896916632 1.168363144 1.201317681 1.243682492 1.056466679 1 19.13536128 -6.326012786 24.99527632 1.153405773 1.029711091 0.066012917 0.174661787 511.2823009 197907.0425 0.062540714 0.05515573 4.72E-07 6.326012786 -0.123694682 GSPHSEGGKRS(ph)PEPNK ddPTM_HeLa_A485_30min_R1 4 GSPHSEGGKRSPEPNK 16 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GSPHS(0.001)EGGKRS(0.999)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK ;;; 130.05 7.22E-06 1816670000 855649 715793 611294 1193911 1207635 987162 1660417 1326299 1019821 2052190 TRUE FALSE FALSE 1045985.168 799498.7648 837437.0887 1259131.335 1087398.619 1038848.276 1305655.344 1001022.091 1224489.72 1540616.801 0.678939219 0.518947193 0.543572606 0.817290409 0.705820304 0.674306729 0.847488709 0.649754105 0.79480486 1 20.55507663 -14 0.064778499 2.127180853 0.25059445 0.592918517 0.087964145 251.6186417 1.180268081 43.44065992 6.28596506 1.00E-14 14 -1.876586403 GSPHSEGGKRS(ph)PEPNK ddPTM_HeLa_A486_30min_R1 4 GSPHSEGGKRSPEPNK 16 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GSPHSEGGKRS(1)PEPNK;GSPHS(0.039)EGGKRS(0.961)PEPNK;GSPHSEGGKRS(1)PEPNK;GSPHSEGGKRS(1)PEPNK ;;; 130.25 7.10E-06 1458273000 605260 466067 329246 83240 554850 699110 955640 762570 527040 625700 TRUE FALSE FALSE 562834.3996 429134.1535 456738.8687 193786.9267 485255.5392 612860.9162 716528.7643 588949.4578 572724.2516 469020.6474 1.200020517 0.914957915 0.973813991 0.413173552 1.03461445 1.306682168 1.527712625 1.255700492 1.221106693 1 18.83929191 -6.110484936 4.4754393 1.291902367 0.869242447 0.402693306 0.219744298 0.22072172 7.195373955 0.075493201 0.076223878 7.75E-07 6.110484936 -0.422659919 GSPHSEGGKRS(ph)PEPNKTSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR ddPTM_HeLa_A485_30min_R1 1 GSPHSEGGKRSPEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSR 43 3 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 GS(0.204)PHS(0.233)EGGKRS(0.291)PEPNKT(0.135)S(0.141)VLGGGEDGIEPVS(0.989)PPEGMT(0.006)EPGHS(0.001)R 41.223 0.022707 257060000 22064 39744 24259 20857 50703 54526 77029 119220 34029 36696 TRUE FALSE FALSE 26972.06068 44391.71507 33233.4136 21996.3651 45654.83129 57380.89705 60571.12488 89981.10807 40858.30817 27548.36254 0.979080359 1.611410297 1.206366206 0.798463613 1.657261161 2.082914981 2.198719608 3.266296062 1.48314834 1 14.74967895 -6.076839915 3.177851898 2.16049323 1.186051808 0.302256191 0.585920285 0.276194075 5.418314397 0.196802064 0.203548998 8.38E-07 6.076839915 -0.974441423 GSPHYFS(ph)PFRPY ddPTM_HeLa_A486_30min_R1 1 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GS(0.002)PHYFS(0.997)PFRPY 141.73 0.00032046 0 547370 586420 574170 82347 750160 500260 546950 565570 559370 432060 TRUE FALSE FALSE 509002.1896 539949.9435 796504.0008 191707.9776 656067.9378 438543.0075 410097.325 436802.0573 607856.642 323869.3638 1.57162809 1.667184377 2.459337282 0.591929954 2.025717809 1.354073761 1.266243031 1.348698291 1.876857493 1 18.30505248 -5.244774921 24.94748222 1.391053843 1.876163223 0.242681221 0.43881331 1276.040323 1910289.893 0.114176501 0.197060045 5.69E-06 5.244774921 0.48510938 GSPPVPGGPRQPS(ph)PGPTPPPFPGNR ddPTM_HeLa_A485_30min_R1 1 GSPPVPGGPRQPSPGPTPPPFPGNR 25 1 O43516-2;O43516;O43516-3;E9PB87 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 GSPPVPGGPRQPS(0.978)PGPT(0.022)PPPFPGNR 66.027 0.0066065 129810000 43679 65146 31384 51167 55387 65690 108600 134950 47198 89647 TRUE FALSE FALSE 53395.24286 72764.25801 42994.2476 53962.12365 49872.4758 69129.42682 85396.72282 101853.3009 56670.20567 67299.65273 0.793395518 1.08119812 0.638847986 0.801818753 0.741051013 1.027188463 1.268902875 1.513429814 0.842057921 1 16.03831144 -6.494530535 3.999634588 1.196414616 0.818106695 0.406584445 0.194745542 0.204051342 7.22419125 0.073152718 0.060339971 3.20E-07 6.494530535 -0.378307921 GSPS(ph)GGSTAEASDTLSIR ddPTM_HeLa_A485_30min_R1 1 GSPSGGSTAEASDTLSIR 18 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GS(0.001)PS(0.999)GGSTAEASDTLSIR 227.63 1.04E-34 215330000 80073 84185 84382 90502 89366 78123 90934 58779 91347 133210 TRUE FALSE FALSE 97884.9626 94029.70344 115598.4132 95445.8951 80468.40726 82213.39948 71505.20804 44363.35809 109679.505 100003.1985 0.978818318 0.940266959 1.155947159 0.954428423 0.804658335 0.822107699 0.71502921 0.443619392 1.09675997 1 16.60968662 -5.71121557 3.305486879 0.778378942 1.021699684 0.22588541 0.17193875 0.309740939 6.901142913 0.052851939 0.067640466 1.94E-06 5.71121557 0.243320742 GSPS(ph)GGSTAEASDTLSIR ddPTM_HeLa_A486_30min_R1 2 GSPSGGSTAEASDTLSIR 18 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GS(0.218)PS(0.782)GGSTAEASDTLSIR;GS(0.016)PS(0.984)GGSTAEASDTLSIR ; 287.03 7.96E-70 394210000 144700 160324 131300 45350 182312 140781 140865 140775 154288 162197 TRUE FALSE FALSE 134557.2772 147619.3424 182142.8763 105577.0919 159444.729 123412.8716 105619.0871 108723.6056 167661.8081 121581.8155 1.10672206 1.214156424 1.498109529 0.868362522 1.311419215 1.015060279 0.868707929 0.894242327 1.379003985 1 16.89156794 -5.69880239 1.310610034 1.030298703 1.240303399 0.124188575 0.200364466 0.857007979 3.075723437 0.077531406 0.11742111 2.00E-06 5.69880239 0.210004696 GSPS(ph)PASVSSGR ddPTM_HeLa_A485_30min_R1 1 GSPSPASVSSGR 12 0 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GS(0.324)PS(0.675)PASVSSGR 184.65 6.13E-13 748240000 769270 1030400 1203500 683960 917340 1052900 792650 991390 1146900 913070 TRUE FALSE FALSE 940391.4575 1150896.317 1648724.732 721323.0029 826006.4086 1108028.216 623293.8521 748250.0481 1377072.31 685458.4528 1.371916057 1.679016886 2.405287622 1.05232199 1.205042268 1.616477573 0.909309455 1.091605253 2.008979982 1 19.3867097 -5.29269111 24.99872731 1.269735162 1.804768284 0.294774834 0.389404578 835.4420506 668280.8171 0.109356871 0.162219948 5.10E-06 5.29269111 0.535033122 GSPT(ph)RPNPPVR ddPTM_HeLa_A485_30min_R1 1 GSPTRPNPPVR 11 1 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GS(0.414)PT(0.586)RPNPPVR 81.525 0.013853 417530000 323620 473030 390320 316810 462580 424330 450830 494050 369230 463230 TRUE FALSE FALSE 395608.1525 528346.7437 534715.6106 334116.5281 416523.911 446547.2627 354506.4876 372883.4629 443331.0742 347755.2861 1.137605001 1.519306147 1.537620367 0.960780587 1.197750049 1.284084759 1.019413656 1.072258216 1.274836334 1 18.40771292 -5.256916485 24.99991344 1.125036561 1.410290069 0.440050836 0.145613933 358.7453717 1982927.688 0.03967274 0.06580077 5.53E-06 5.256916485 0.285253508 GSPT(ph)RPNPPVR ddPTM_HeLa_A486_30min_R1 2 GSPTRPNPPVR 11 1 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GS(0.311)PT(0.689)RPNPPVR;GS(0.42)PT(0.58)RPNPPVR ; 101.43 0.0026734 6287400000 680320 783190 735200 230431 892290 687450 752890 813350 652810 787340 TRUE FALSE FALSE 632633.0812 721127.1721 1019889.129 536455.0133 780370.6679 602639.4085 564508.9587 628167.9603 709396.0964 590184.9393 1.071923458 1.221866442 1.728083964 0.908960866 1.322247682 1.021102655 0.956495026 1.064357828 1.201989494 1 19.17080758 -5.316481472 24.99999815 1.074569375 1.328754229 0.299116556 0.190872624 387.2124979 175870.2032 0.05374275 0.079713431 4.83E-06 5.316481472 0.254184853 GSPTRPNPPVR ddPTM_HeLa_A485_30min_R1 2 GSPTRPNPPVR 11 1 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 0 0 ; ; 77.674 0.011124 770890000 220883 337030 357860 212527 340250 287736 320350 364300 304840 267668 FALSE FALSE TRUE 270017.6613 376442.7267 490247.3058 224136.8119 306373.5153 302801.412 251904.6055 274954.8538 366018.5918 200943.2937 1.34375055 1.873377906 2.439729622 1.115423201 1.524676488 1.506899815 1.253610414 1.368320628 1.821501903 1 17.6164289 -5.283708143 24.99756408 1.392700207 1.884395383 0.342175354 0.326524299 904.4686953 1015299.705 0.091309099 0.135546227 5.20E-06 5.283708143 0.491695175 GSPVSEIGWETPPPES(ph)PR ddPTM_HeLa_A485_30min_R1 4 GSPVSEIGWETPPPESPR 18 0 A0A3B3ITC2;Q13884-2;Q13884 A0A3B3ITC2 SNTB1 Beta-1-syntrophin 1 0 GSPVSEIGWETPPPES(1)PR;GSPVSEIGWETPPPES(1)PR;GSPVSEIGWETPPPES(1)PR;GSPVSEIGWETPPPES(1)PR ;;; 241.13 2.96E-45 121074000 149802 213607 238051 176329 238415 193146 239918 251456 199094 245311 TRUE FALSE FALSE 183124.9381 238586.4805 326115.971 185961.4068 214677.5655 203258.8259 188657.5594 189786.0217 239050.3396 184159.4823 0.994382346 1.295542741 1.770834534 1.009784587 1.165715513 1.103710889 1.024424901 1.030552537 1.298061531 1 17.49059616 GSPVSEIGWETPPPES(ph)PR ddPTM_HeLa_A486_30min_R1 2 GSPVSEIGWETPPPESPR 18 0 A0A3B3ITC2;Q13884-2;Q13884 A0A3B3ITC2 SNTB1 Beta-1-syntrophin 1 0 GSPVSEIGWET(0.003)PPPES(0.997)PR;GSPVSEIGWETPPPES(1)PR ; 167.92 3.48E-12 261727000 117800 131649 131238 44208 166795 113894 121544 113392 122232 142141 TRUE FALSE FALSE 109542.8283 121216.6538 182056.8683 102918.4581 145874.0158 99842.91627 91132.40564 87575.11693 132827.1682 106547.9684 1.02810809 1.137672126 1.708684558 0.965935434 1.369092419 0.937070108 0.855318097 0.821931363 1.24664196 1 16.70114356 -6.275062324 24.08594136 0.953758343 1.246709442 0.271874219 0.219584789 632.4434104 1118182.377 0.076551822 0.067909679 5.31E-07 6.275062324 0.292951098 GSPVT(ph)TREPTPR ddPTM_HeLa_A485_30min_R1 1 GSPVTTREPTPR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 GS(0.093)PVT(0.789)T(0.093)REPT(0.025)PR 142.77 5.09E-07 155430000 137580 226090 213690 109040 244830 193880 202180 221210 170880 138920 TRUE FALSE FALSE 168184.1964 252529.2588 292742.8234 114996.5791 220453.8655 204031.257 158982.5913 166957.9007 205174.0486 104289.8006 1.61266198 2.421418559 2.807012974 1.102663716 2.113858347 1.956387449 1.524430868 1.600903441 1.967345295 1 16.67023855 -10.06230758 0.138393901 3.12E-16 2.450949704 0.294555214 0.446576417 41.02057235 1.147773418 19.21084191 4.001497972 8.66E-11 10.06230758 2.450949704 GSQEDDPAATQRPPS(ph)NGGAK ddPTM_HeLa_A486_30min_R1 1 GSQEDDPAATQRPPSNGGAK 20 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 GSQEDDPAAT(0.007)QRPPS(0.993)NGGAK 79.663 0.0011754 551340000 522150 622180 384570 169290 546730 560280 586190 552080 515930 562880 TRUE FALSE FALSE 485549.9814 572876.1909 533485.8031 394115.6754 478154.0253 491158.3501 439519.0619 426383.4358 560651.2278 421931.1843 1.150780031 1.357747927 1.264390552 0.934075722 1.133251211 1.164072172 1.041684233 1.01055208 1.328774096 1 18.68664819 -5.146160866 11.62516201 1.091143045 1.268349526 0.321704539 0.112825427 0.630221209 60.27202658 0.029531081 0.051183346 7.14E-06 5.146160866 0.177206481 GSQHS(ph)PTRPPVAAAAASLGSLPGPGAAR ddPTM_HeLa_A485_30min_R1 1 GSQHSPTRPPVAAAAASLGSLPGPGAAR 28 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 GSQHS(0.881)PT(0.119)RPPVAAAAASLGSLPGPGAAR 253.12 2.97E-63 1333600000 206220 413500 445130 116610 442420 338930 303970 381230 357900 226800 TRUE FALSE FALSE 252092.9275 461855.228 609802.1104 122980.109 398371.1114 356675.8507 239024.3263 287732.7448 429727.2471 170262.9339 1.480609559 2.712599961 3.581531789 0.722295253 2.339740671 2.094853192 1.403854149 1.68993179 2.523903689 1 17.37740487 -5.259672351 24.99997892 1.74383819 2.60368231 0.253647705 0.709330658 233.9888667 3310456.962 0.193049966 0.313460565 5.50E-06 5.259672351 0.85984412 GSQHS(ph)PTRPPVAAAAASLGSLPGPGAAR ddPTM_HeLa_A486_30min_R1 1 GSQHSPTRPPVAAAAASLGSLPGPGAAR 28 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 GS(0.003)QHS(0.674)PT(0.323)RPPVAAAAASLGSLPGPGAAR 261.14 1.63E-63 1834600000 437850 476810 478620 55816 589950 322710 369220 372630 425020 215170 TRUE FALSE FALSE 407158.9761 439025.8391 663954.4819 129942.4688 515952.9699 282897.3213 276837.2508 287790.2835 461861.0758 161290.0315 2.524390208 2.721965115 4.116525217 0.805644761 3.198914187 1.753966558 1.716394053 1.784302978 2.863543838 1 17.29929775 -5.258053125 24.99999619 1.950911551 3.081060592 0.340163451 0.789863355 360.6637241 2662691.335 0.208294561 0.34279816 5.52E-06 5.258053125 1.130149041 GSQHSPT(ph)RPPVAAAAASLGSLPGPGAAR ddPTM_HeLa_A485_30min_R1 1 GSQHSPTRPPVAAAAASLGSLPGPGAAR 28 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 GSQHS(0.275)PT(0.725)RPPVAAAAASLGSLPGPGAAR 256.93 5.70E-63 1785200000 163210 414610 515370 104490 515810 369330 331380 421440 389060 249420 TRUE FALSE FALSE 199515.5014 463095.0329 706026.8093 110198.0241 464454.1453 388667.5477 260577.9559 318081.1792 467140.7733 187244.1842 1.06553644 2.473214507 3.770620766 0.588525751 2.48047301 2.075725606 1.391647794 1.698750647 2.494821269 1 17.51456138 -5.27039855 24.99798016 1.743184638 2.440133007 0.146565507 0.830123921 1335.253969 3725639.065 0.231195549 0.348562356 5.37E-06 5.27039855 0.696948369 GSQNSSEHRPPASSTSEDVKAS(ph)PSSANK ddPTM_HeLa_A485_30min_R1 2 GSQNSSEHRPPASSTSEDVKASPSSANK 28 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 GSQNSSEHRPPAS(0.001)S(0.001)T(0.001)S(0.001)EDVKAS(0.972)PS(0.022)S(0.004)ANK;GSQNSSEHRPPAS(0.006)S(0.006)T(0.006)S(0.006)EDVKAS(0.759)PS(0.108)S(0.108)ANK ; 103.01 0.0002872 378140000 179496 199242 138790 128363 284780 228495 357500 362040 201211 348430 TRUE FALSE FALSE 219424.2659 222541.6187 190134.1965 135375.1457 256426.3033 240458.6449 281117.2045 273249.1223 241592.2021 261572.8134 0.838864954 0.850782678 0.726888219 0.517542874 0.980324752 0.919279958 1.07471874 1.044638848 0.923613578 1 17.99685308 -5.895330278 11.67298881 0.994754735 0.741514565 0.633705534 0.095638201 0.294694474 30.84234315 0.031499412 0.035726376 1.27E-06 5.895330278 -0.25324017 GSQNSSEHRPPASSTSEDVKAS(ph)PSSANK ddPTM_HeLa_A486_30min_R1 2 GSQNSSEHRPPASSTSEDVKASPSSANK 28 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 GSQNSSEHRPPASSTSEDVKAS(0.994)PS(0.006)SANK;GSQNSSEHRPPASSTSEDVKAS(0.992)PS(0.006)S(0.001)ANK ; 210.58 2.74E-29 323070000 263020 265490 147421 14564.9 276060 262780 347150 301090 234140 176170 TRUE FALSE FALSE 244583.6562 244451.6055 204506.3593 33907.82327 241433.9806 230360.8754 260289.3982 232538.3797 254435.4437 132055.8853 1.852122347 1.851122386 1.548634949 0.25676874 1.828271266 1.744419605 1.971054888 1.76090887 1.926725515 1 17.01078907 GSQPPPAAESQSS(ph)LRR ddPTM_HeLa_A486_30min_R1 1 GSQPPPAAESQSSLRR 16 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 GSQPPPAAESQS(0.022)S(0.978)LRR 184.96 5.38E-18 598890000 243340 272380 181540 65053 184580 232800 225900 234600 197850 257760 TRUE FALSE FALSE 226283.1226 250795.6168 251837.1498 151446.6716 161428.2553 204079.5029 169377.4307 181186.7013 214999.7973 193215.2183 1.171145444 1.298011715 1.303402248 0.783823722 0.835484165 1.056228928 0.876625724 0.937745499 1.112747739 1 17.5598492 -5.248825826 24.97324442 0.938085485 1.261569022 0.679659804 0.098819971 435.6914091 862612.6549 0.027441956 0.047114317 5.64E-06 5.248825826 0.323483537 GSRPAS(ph)PAAK ddPTM_HeLa_A485_30min_R1 4 GSRPASPAAK 10 1 A0A590UJ53;Q9P2N6-6;Q9P2N6-2;Q9P2N6-5;Q9P2N6-4;Q9P2N6-3;Q9P2N6;Q9P2N6-8 A0A590UJ53 KANSL3 KAT8 regulatory NSL complex subunit 3 1 0 GS(0.004)RPAS(0.996)PAAK;GS(0.002)RPAS(0.998)PAAK;GS(0.132)RPAS(0.868)PAAK;GS(0.09)RPAS(0.91)PAAK ;;; 73.386 0.0057509 1458085000 1680720 1425550 652185 2282570 759041 1455300 1282540 1646400 1428650 2518260 TRUE FALSE FALSE 2054590.366 1592255.672 893455.3712 2407261.019 683468.2129 1531497.258 1008514.852 1242617.819 1715366.951 1890504.127 1.086794964 0.842238665 0.472601651 1.273343435 0.361526962 0.810099928 0.533463449 0.657294423 0.907359538 1 20.85033957 -4.350806926 3.872629698 0.734816084 1.094034272 0.129690881 0.255531625 0.408177242 10.06831031 0.060498296 0.333951856 4.46E-05 4.350806926 0.359218188 GSRPAS(ph)PAAK ddPTM_HeLa_A486_30min_R1 3 GSRPASPAAK 10 1 A0A590UJ53;Q9P2N6-6;Q9P2N6-2;Q9P2N6-5;Q9P2N6-4;Q9P2N6-3;Q9P2N6;Q9P2N6-8 A0A590UJ53 KANSL3 KAT8 regulatory NSL complex subunit 3 1 0 GS(0.032)RPAS(0.968)PAAK;GS(0.117)RPAS(0.883)PAAK;GS(0.07)RPAS(0.93)PAAK ;; 66.059 0.0088622 1134380000 1333930 420072 875800 454351 450385 1916980 863160 694921 1458450 1561440 TRUE FALSE FALSE 1240428.395 386783.9648 1214933.215 1057752.09 393893.5136 1680482.498 647188.2384 536702.6583 1584869.62 1170445.261 1.05979189 0.330458824 1.038009427 0.903717692 0.33653305 1.435763426 0.55294191 0.458545714 1.354074106 1 20.15862603 -7.772711914 24.99999948 1.177037064 0.764823654 0.18439561 0.347070431 403.5079293 894862.3327 0.307905642 0.082410528 1.69E-08 7.772711914 -0.41221341 GSRPIDTSR ddPTM_HeLa_A485_30min_R1 2 GSRPIDTSR 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 ; ; 70.1 0.019093 85341000 58023 85153 94469 44748 89179 78235 74745 92943 79345 61340 FALSE FALSE TRUE 70930.01617 95110.90262 129417.0143 47192.46993 80300.02563 82331.26363 58775.12014 70148.58352 95268.8137 46049.06688 1.540313865 2.065425188 2.810415564 1.024830103 1.743792678 1.787902974 1.276358548 1.523344299 2.06885438 1 15.4908843 -5.271990682 24.99475051 1.525277003 2.131388939 0.32560211 0.426066145 859.6054749 2036299.048 0.118728383 0.178236075 5.35E-06 5.271990682 0.606111936 GSRPIDTSR ddPTM_HeLa_A486_30min_R1 1 GSRPIDTSR 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;H7C044 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 67.726 0.021144 20206000 21681 21207 26261 6843.3 31418 22072 21321 22782 17014 21035 FALSE FALSE TRUE 20161.27386 19526.48009 36429.96249 15931.54824 27477.26148 19348.98105 15986.26029 17595.03593 18488.78722 15767.69909 1.278644002 1.238384877 2.310417157 1.010391444 1.742629748 1.227127747 1.013861325 1.115891154 1.172573571 1 13.94468453 -6.470222227 5.949799465 1.088918702 1.515898416 0.286050544 0.330624924 0.288797629 23.40647233 0.116590421 0.100751498 3.39E-07 6.470222227 0.426979714 GSRPMS(ph)MYETGSGQKPYLPMGEASRPEESR ddPTM_HeLa_A485_30min_R1 2 GSRPMSMYETGSGQKPYLPMGEASRPEESR 30 3 F8VXI9;Q14161-4;Q14161-3;Q14161;R4GNG3;F8WAK2;Q14161-9;Q14161-10;Q14161-8;Q14161-5 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 GS(0.165)RPMS(0.835)MYETGSGQKPYLPMGEASRPEESR;GS(0.001)RPMS(0.92)MYET(0.078)GS(0.001)GQKPYLPMGEASRPEESR ; 182.17 6.73E-20 1925080000 230082 243456 291464 279447 319104 347579 418930 460800 261246 347580 TRUE FALSE FALSE 281262.9471 271926.0614 399288.6624 294712.482 287332.8853 365777.699 329422.1832 347788.0775 313675.6759 260934.7027 1.077905484 1.042123024 1.530224452 1.129449165 1.101167772 1.401797826 1.262469805 1.332854825 1.202123262 1 17.9933293 GSRPMS(ph)MYETGSGQKPYLPMGEASRPEESR ddPTM_HeLa_A486_30min_R1 2 GSRPMSMYETGSGQKPYLPMGEASRPEESR 30 3 F8VXI9;Q14161-4;Q14161-3;Q14161;R4GNG3;F8WAK2;Q14161-9;Q14161-10;Q14161-8;Q14161-5 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 GS(0.04)RPMS(0.96)MYETGSGQKPYLPMGEASRPEESR;GS(0.004)RPMS(0.996)MYETGSGQKPYLPMGEASRPEESR ; 200.11 8.61E-29 1235860000 291860 348020 320130 139426 434110 353990 425630 438610 303770 387890 TRUE FALSE FALSE 271402.1212 320441.6277 444092.9094 324590.7742 379659.8759 310318.3129 319132.8721 338748.0778 330101.0282 290759.8193 0.933423751 1.102083598 1.527353093 1.116353611 1.305750832 1.067266838 1.097582441 1.165044326 1.135304833 1 18.14946839 -6.28760206 24.37326981 1.103638877 1.205593638 0.104640688 0.14939517 1447.661891 1348642.483 0.054137281 0.047758894 5.16E-07 6.28760206 0.101954761 GSRPMSMYET(ph)GSGQKPYLPMGEASRPEESR ddPTM_HeLa_A485_30min_R1 1 GSRPMSMYETGSGQKPYLPMGEASRPEESR 30 3 F8VXI9;Q14161-4;Q14161-3;Q14161;R4GNG3;F8WAK2;Q14161-9;Q14161-10;Q14161-8;Q14161-5 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 GS(0.003)RPMS(0.414)MY(0.001)ET(0.439)GS(0.144)GQKPYLPMGEASRPEESR 91.354 0.00086525 1302200000 133490 120290 126440 118330 159090 138160 150770 173800 123600 174590 TRUE FALSE FALSE 163184.39 134356.8691 173215.4176 124794.0683 143250.441 145393.844 118556.7578 131175.2775 148405.3863 131067.9261 1.24503679 1.025093424 1.321569836 0.952132776 1.092948102 1.109301477 0.904544394 1.000819052 1.132278435 1 16.99995516 -5.27743008 24.9970565 1.028486907 1.180019375 0.392069846 0.096173544 868.5580803 1357749.279 0.026400352 0.039300931 5.28E-06 5.27743008 0.151532468 GSRPPLILQSQSLPCS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GSRPPLILQSQSLPCS(0.5)S(0.5)PR 165.24 9.82E-13 4305400000 1351900 1989700 1934500 1244000 2080300 1857900 2076600 2432700 1903500 2017800 TRUE FALSE FALSE 1652625.491 2222378.107 2650152.051 1311956.57 1873178.028 1955176.771 1632917.446 1836076.511 2285514.99 1514799.595 1.090986225 1.467110312 1.749506707 0.866092501 1.236584717 1.29071646 1.077975893 1.212092027 1.508790336 1 20.53069551 -5.260559235 24.99999892 1.183088545 1.438991981 0.232580833 0.22016884 123.4170175 3505541.739 0.06084591 0.098019924 5.49E-06 5.260559235 0.255903436 GSRPPLILQSQSLPCSS(ph)PR ddPTM_HeLa_A485_30min_R1 3 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GSRPPLILQSQSLPCS(0.069)S(0.931)PR;GSRPPLILQSQSLPCS(0.196)S(0.804)PR;GSRPPLILQSQSLPCS(0.145)S(0.855)PR ;; 224.68 3.69E-35 6862900000 1322760 2136120 2032630 1391350 2261820 1736850 2199500 2402570 2010180 2029270 TRUE FALSE FALSE 1617003.399 2385920.652 2784584.422 1467355.927 2036625.259 1827788.78 1729558.857 1813335.94 2413604.688 1523410.335 1.061436542 1.566170714 1.827862368 0.963204656 1.336885547 1.199800696 1.135320417 1.190313535 1.584343123 1 20.53887316 -5.272376678 24.9897432 1.212163519 1.493257979 0.227299451 0.239028965 1055.611908 2411880.105 0.066617216 0.099891348 5.34E-06 5.272376678 0.28109446 GSRPPLILQSQSLPCSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GSRPPLILQSQSLPCS(0.115)S(0.885)PR;GSRPPLILQSQSLPCS(0.249)S(0.751)PR ; 184.59 1.81E-18 7916600000 1906650 2224200 2188300 606790 2383400 1715320 1892900 2122800 1703040 2023300 TRUE FALSE FALSE 1773003.681 2047946.292 3035668.365 1412637.785 2084451.748 1503701.258 1419276.399 1639484.78 1850660.878 1516652.511 1.169024327 1.350306862 2.001558263 0.931418222 1.374376618 0.991460633 0.935795371 1.080989066 1.220227353 1 20.53245915 -5.309007081 24.99999697 1.082725943 1.491299596 0.414913249 0.234036343 394.1984153 207176.6939 0.066193016 0.098180359 4.91E-06 5.309007081 0.408573653 GSS(ph)DGRGS(ph)DS(ph)ESDLPHR ddPTM_HeLa_A485_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 3 0 GS(0.469)S(0.535)DGRGS(0.988)DS(0.504)ES(0.504)DLPHR 72.805 0.012849 1260500000 340370 545700 510310 361210 681240 479910 549700 598190 488310 483710 TRUE FALSE FALSE 416084.1322 609514.868 699094.9048 380941.9877 613413.3536 505037.3455 432252.1044 451482.9646 586309.338 363129.999 1.145826931 1.678503207 1.925191823 1.049051273 1.689238992 1.390789378 1.190350854 1.243309464 1.614599013 1 18.47012659 -6.520911131 22.89772886 1.283516157 1.509810566 0.134222153 0.278974943 56.86202384 661774.5983 0.103553272 0.081717537 3.01E-07 6.520911131 0.226294409 GSS(ph)DGRGS(ph)DS(ph)ESDLPHR ddPTM_HeLa_A486_30min_R1 3 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 3 0 GS(0.453)S(0.547)DGRGS(0.982)DS(0.728)ES(0.289)DLPHR;GS(0.464)S(0.536)DGRGS(1)DS(0.5)ES(0.5)DLPHR;GS(0.114)S(0.886)DGRGS(1)DS(0.999)ES(0.001)DLPHR ;; 167.35 5.15E-11 3013830000 1819970 2172720 1913950 455650 2622440 1849770 2119750 2083940 1854820 1714570 TRUE FALSE FALSE 1692399.501 2000545.754 2655082.697 1060776.227 2293509.122 1621564.184 1589366.13 1609472.354 2015597.291 1285230.512 1.316806196 1.556565718 2.065841631 0.825358733 1.784511884 1.261691323 1.236638965 1.252283026 1.568276875 1 20.29359571 -12.45731118 0.098559112 1.23E-11 1.765856248 0.147512864 0.320779661 240.208645 2.267552669 56.85698151 6.213776396 3.49E-13 12.45731118 1.765856248 GSS(ph)DGRGS(ph)DSES(ph)DLPHR ddPTM_HeLa_A485_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 3 0 GS(0.427)S(0.573)DGRGS(0.994)DS(0.431)ES(0.575)DLPHR 86.856 0.0020558 926110000 351060 462520 450880 361300 595090 455480 530450 505620 458980 519450 TRUE FALSE FALSE 429152.0859 516607.6906 617679.2747 381036.9041 535840.7501 479328.2285 417115.0241 381615.9022 551093.076 389960.6748 1.100500932 1.324768686 1.583952728 0.977116229 1.374089196 1.229170682 1.069633558 0.97860099 1.413201668 1 18.57296912 -6.610726293 5.280632032 1.114879785 1.278293917 0.13540866 0.187109219 0.421860777 19.46032706 0.071542325 0.054936294 2.45E-07 6.610726293 0.163414132 GSS(ph)DGRGS(ph)DSES(ph)DLPHR ddPTM_HeLa_A486_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 3 0 GS(0.457)S(0.544)DGRGS(0.995)DS(0.416)ES(0.588)DLPHR 83.826 0.0038448 1342100000 645190 877080 717660 122770 875890 676900 647850 705010 735380 504740 TRUE FALSE FALSE 599965.5128 807576.9865 995557.1716 285814.7645 766027.7089 593390.9602 485751.0777 544494.6133 799123.3305 378349.8187 1.585742831 2.134471715 2.631313991 0.755424611 2.024654621 1.568365917 1.283867611 1.439130102 2.112128224 1 18.52936123 -5.248228524 24.99837626 1.494447116 2.11890566 0.307181628 0.45312444 1018.370511 1927018.779 0.119640574 0.205660291 5.65E-06 5.248228524 0.624458544 GSS(ph)FQSGR ddPTM_HeLa_A485_30min_R1 6 GSSFQSGR 8 0 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 GS(0.029)S(0.971)FQSGR;GS(0.003)S(0.997)FQSGR;GS(0.003)S(0.997)FQSGR;GS(0.006)S(0.994)FQSGR;GS(0.001)S(0.999)FQSGR;GS(0.001)S(0.999)FQSGR ;;;;; 175.93 1.33E-05 4288430000 4945720 6090830 6596480 5624720 7137420 5169920 6113360 5537580 6568500 8125240 TRUE FALSE FALSE 6045878.351 6803099.585 9036792.454 5931984.211 6426793.404 5440609.017 4807190.694 4179479.822 7886737.7 6099767.202 0.991165425 1.115304791 1.481497925 0.972493542 1.053612899 0.891937157 0.788094125 0.685186776 1.292957164 1 22.54032275 -5.492508488 24.69666448 0.93303126 1.194433452 0.249026827 0.190441339 778.7211589 633244.7107 0.054258538 0.080349657 3.22E-06 5.492508488 0.261402191 GSS(ph)FQSGR ddPTM_HeLa_A486_30min_R1 6 GSSFQSGR 8 0 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 GS(0.005)S(0.995)FQSGR;GS(0.061)S(0.939)FQSGR;GS(0.001)S(0.999)FQSGR;GS(0.002)S(0.998)FQSGR;GS(0.017)S(0.983)FQSGR;GS(0.001)S(0.999)FQSGR ;;;;; 185.61 6.17E-06 4838280000 7286760 8837290 8529810 2683638 8925530 8167580 8242590 8114290 7652110 7270490 TRUE FALSE FALSE 6775995.753 8136990.956 11832780.87 6247644.888 7806006.8 7159947.021 6180206.801 6266843.301 8315401.056 5449911.981 1.243322053 1.493049977 2.171187518 1.146375374 1.432317958 1.313772965 1.134001214 1.149898076 1.525786304 1 22.3778015 GSS(ph)FQSGRDDTWR ddPTM_HeLa_A485_30min_R1 1 GSSFQSGRDDTWR 13 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 GS(0.192)S(0.808)FQSGRDDTWR 179.74 2.33E-17 1290900000 201860 408060 373810 183590 550280 444170 523770 632780 370830 254970 TRUE FALSE FALSE 246763.0606 455779.0673 512097.8745 193619.0568 495492.191 467426.0544 411862.2607 477589.7128 445252.1795 191410.6714 1.289181313 2.381158083 2.67538832 1.011537421 2.5886341 2.442006243 2.151720475 2.495104946 2.326161736 1 17.54631174 GSS(ph)FQSGRDDTWR ddPTM_HeLa_A486_30min_R1 2 GSSFQSGRDDTWR 13 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 GS(0.096)S(0.904)FQSGRDDTWR;GS(0.049)S(0.951)FQSGRDDTWR ; 139.49 1.83E-06 1109960000 493150 492460 488870 192635 747240 420290 519920 630180 396400 415940 TRUE FALSE FALSE 458582.7316 453435.6761 678173.5564 448464.0152 653514.1915 368438.893 389830.5168 486701.7707 430760.2712 311785.9167 1.470825676 1.454317376 2.175125688 1.438371624 2.096034992 1.181704732 1.250314706 1.561012684 1.381589893 1 18.25019624 -6.285809964 24.88111701 1.30844957 1.720657877 0.404239635 0.27280226 832.3324028 849765.644 0.094401926 0.083294026 5.18E-07 6.285809964 0.412208307 GSS(ph)GSPAHAESYSSGGGGQQK ddPTM_HeLa_A486_30min_R1 1 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.091)S(0.539)GS(0.37)PAHAESYSSGGGGQQK 254.34 7.14E-59 937900000 589790 607400 438410 20716 666190 475080 555410 514950 502670 309580 TRUE FALSE FALSE 548448.7667 559267.4119 608174.093 48227.89493 582630.2382 416469.4599 416440.5435 397707.1263 546241.8403 232059.153 2.363400709 2.410020914 2.620771839 0.207825868 2.510697082 1.794669396 1.794544788 1.713817883 2.35389052 1 17.82413308 GSS(ph)LSGTDDGAQEVVK ddPTM_HeLa_A485_30min_R1 2 GSSLSGTDDGAQEVVK 16 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GS(0.002)S(0.998)LSGTDDGAQEVVK;GSS(1)LSGTDDGAQEVVK ; 413.31 1.23E-152 1422370000 1504740 1504010 1070520 1581780 1258260 1376600 1613850 1534980 1219860 2240100 TRUE FALSE FALSE 1839464.222 1679890.886 1466549.896 1668188.636 1132983.216 1448676.647 1269037.764 1158523.748 1464674.713 1681684.296 1.09382256 0.998933563 0.872072065 0.991974915 0.67371933 0.861443881 0.754623068 0.688906801 0.870957002 1 20.68147546 -4.651516281 0.864554958 0.79892915 1.160868907 0.413742735 0.103316731 1.221930954 1.057937298 0.037790704 0.377100338 2.23E-05 4.651516281 0.361939758 GSS(ph)LSGTDDGAQEVVK ddPTM_HeLa_A486_30min_R1 2 GSSLSGTDDGAQEVVK 16 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GSS(1)LSGTDDGAQEVVK;GS(0.004)S(0.996)LSGTDDGAQEVVK ; 471.03 4.72E-216 1852680000 2353000 2497100 1369030 596260 1793620 2006000 2191400 2042700 1968950 2534000 TRUE FALSE FALSE 2188066.851 2299220.702 1899155.08 1388123.413 1568647.455 1758520.116 1643088.542 1577621.802 2139620.171 1899469.906 1.151935518 1.210453871 0.999834256 0.73079516 0.825834329 0.925795197 0.865024782 0.830558987 1.12643015 1 20.85716542 -4.924296959 4.34864639 0.888191822 1.177420617 0.534490245 0.102906761 0.147646006 5.317665115 0.027265255 0.060017631 1.19E-05 4.924296959 0.289228795 GSS(ph)PDVHALLEITEESDAVLVDK ddPTM_HeLa_A485_30min_R1 1 GSSPDVHALLEITEESDAVLVDK 23 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 GS(0.095)S(0.905)PDVHALLEITEESDAVLVDK 190.19 3.14E-21 56336000 50612 43572 28525 48380 41053 37027 43016 38239 38115 72240 TRUE FALSE FALSE 61870.46479 48667.36637 39077.58452 51022.8769 36965.61917 38965.67647 33825.28019 28860.82529 45764.33089 54231.89748 1.140850084 0.89739376 0.720564582 0.940827802 0.68162135 0.718501072 0.623715595 0.532174359 0.843863723 1 15.72685403 -1.000011437 0.67186472 0.716544679 45.14616395 0.415551898 0.135942699 217.4920731 1.289588285 0.053874918 14439.16754 0.099997367 1.000011437 44.42961927 GSS(ph)PGPRPVEGTPASR ddPTM_HeLa_A485_30min_R1 9 GSSPGPRPVEGTPASR 16 1 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 GS(0.039)S(0.961)PGPRPVEGTPASR;GS(0.11)S(0.89)PGPRPVEGTPASR;GS(0.132)S(0.868)PGPRPVEGTPASR;GS(0.16)S(0.84)PGPRPVEGTPASR;GS(0.116)S(0.884)PGPRPVEGTPASR;GS(0.143)S(0.857)PGPRPVEGTPASR;GS(0.028)S(0.972)PGPRPVEGTPASR;GS(0.157)S(0.843)PGPRPVEGTPASR;GS(0.175)S(0.824)PGPRPVEGTPASR ;;;;;;;; 115.57 6.06E-05 41825289000 4026870 6338440 6747830 4108870 6904380 5837470 6402410 7263460 5826980 5543210 TRUE FALSE FALSE 4922633.339 7079665.421 9244133.118 4333327.164 6216955.684 6143110.903 5034482.801 5482085.046 6996401.438 4161389.762 1.182930132 1.701274292 2.221405263 1.041317303 1.493961402 1.476216181 1.209808042 1.317368802 1.681265596 1 21.98863399 -5.286109091 24.99884876 1.339881964 1.701810596 0.250304772 0.303343548 1104.791914 1119529.465 0.084985072 0.126114846 5.17E-06 5.286109091 0.361928631 GSS(ph)PGPRPVEGTPASR ddPTM_HeLa_A486_30min_R1 8 GSSPGPRPVEGTPASR 16 1 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 GS(0.126)S(0.874)PGPRPVEGTPASR;GS(0.035)S(0.965)PGPRPVEGTPASR;GS(0.02)S(0.98)PGPRPVEGTPASR;GS(0.03)S(0.97)PGPRPVEGTPASR;GS(0.021)S(0.979)PGPRPVEGTPASR;GS(0.147)S(0.853)PGPRPVEGTPASR;GS(0.189)S(0.811)PGPRPVEGTPASR;GS(0.036)S(0.964)PGPRPVEGTPASR ;;;;;;; 148.85 2.84E-08 56420630000 8611030 10084520 9869550 3183519 12255370 8983750 10311570 10524560 8623980 9804910 TRUE FALSE FALSE 8007441.264 9285385.908 13691304.08 7411393.118 10718187.22 7875426.265 7731506.121 8128347.438 9371513.53 7349696.717 1.089492747 1.263369941 1.862839326 1.008394415 1.458316939 1.071530781 1.051949001 1.105943245 1.275088468 1 22.80925329 -6.274086041 24.54352112 1.104464156 1.343435766 0.213497746 0.225831379 994.9174454 1930841.619 0.079046561 0.070200383 5.32E-07 6.274086041 0.23897161 GSS(ph)PLPTATTPKPLIPTEASIR ddPTM_HeLa_A486_30min_R1 1 GSSPLPTATTPKPLIPTEASIR 22 1 Q9BUK6-2;Q9BUK6;A0A3B3IUD2;Q9BUK6-7;Q9BUK6-3 Q9BUK6-2 MSTO1 Protein misato homolog 1 1 0 GS(0.127)S(0.873)PLPTATTPKPLIPTEASIR 105.73 9.21E-05 409790000 257260 240180 185360 138630 293330 247480 351650 333980 242880 455550 TRUE FALSE FALSE 239227.4025 221147.2621 257136.3561 322737.646 256537.8162 216948.4338 263663.4506 257940.0447 263933.034 341477.3149 0.700566017 0.64761919 0.753011532 0.945121775 0.751258737 0.635323122 0.772125817 0.755365096 0.772915279 1 18.38143021 -8.652196102 1.323973327 1.00017217 0.745217298 0.473382597 0.08023971 4.18363334 7.544011142 0.084333268 0.024774158 2.23E-09 8.652196102 -0.254954872 GSS(ph)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_HeLa_A486_30min_R1 2 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 0 GS(0.186)S(0.814)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK;GS(0.135)S(0.865)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ; 407.14 1.84E-220 2436610000 328930 404980 224593 97516 405760 410320 486450 484750 327670 423230 TRUE FALSE FALSE 305873.7056 372887.9099 311561.4244 227022.1762 354865.7972 359698.8902 364735.0649 374383.007 356072.6994 317250.4532 0.964139539 1.175373923 0.982067705 0.715592914 1.118566715 1.133801029 1.149675473 1.180086595 1.122370972 1 18.2752627 -5.955341214 24.99998307 1.129997296 0.968945124 0.316759112 0.112633735 166.4890915 93199.84399 0.036516489 0.04140579 1.11E-06 5.955341214 -0.161052171 GSS(ph)PSIRPIQGSQGSS(ph)SPVEK ddPTM_HeLa_A486_30min_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 F8W6N3;Q92560;H0Y8E8 F8W6N3;H0Y8E8 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 2 0 GS(0.154)S(0.846)PS(0.007)IRPIQGS(0.039)QGS(0.116)S(0.445)S(0.392)PVEK 78.429 6.55E-05 0 106780 118750 71061 43757 106790 99756 128410 132520 93743 125660 TRUE FALSE FALSE 99295.27341 109339.8175 98577.72228 101868.5074 93395.40242 87449.11896 96280.45982 102348.0889 101868.7187 94193.91809 1.054158012 1.160794877 1.046540204 1.081476484 0.991522641 0.928394537 1.022151555 1.086567912 1.081478728 1 16.52334629 -5.379049458 2.040694054 1.020107642 1.099944979 0.266921126 0.052000742 0.464769899 3.793547772 0.017631968 0.031031914 4.18E-06 5.379049458 0.079837337 GSS(ph)PTPPCSPVQPSK ddPTM_HeLa_A485_30min_R1 4 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 GS(0.001)S(0.999)PTPPCSPVQPSK;GSS(1)PTPPCSPVQPSK;GS(0.034)S(0.966)PTPPCSPVQPSK;GS(0.038)S(0.947)PT(0.014)PPCSPVQPSK ;;; 371.89 1.59E-118 1382990000 778870 908200 878230 969140 1174910 963630 1164680 1072350 949910 1311580 TRUE FALSE FALSE 952126.9444 1014406.09 1203123.823 1022081.664 1057931.835 1014084.177 915836.6034 809354.4811 1140548.224 984627.2438 0.966992281 1.030243776 1.221907916 1.038039188 1.074449079 1.029916837 0.930135347 0.821990744 1.158355338 1 19.90921813 -6.562781554 4.422717467 0.963331496 1.070191579 0.145613459 0.098421301 0.344834377 15.15758274 0.038401275 0.029965937 2.74E-07 6.562781554 0.106860083 GSS(ph)PTPPCSPVQPSK ddPTM_HeLa_A486_30min_R1 4 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 GS(0.004)S(0.996)PTPPCSPVQPSK;GS(0.11)S(0.89)PTPPCSPVQPSK;GS(0.005)S(0.988)PT(0.007)PPCSPVQPSK;GS(0.004)S(0.994)PT(0.002)PPCSPVQPSK ;;; 237.46 4.38E-41 1278160000 923230 1249530 966570 412802 1354930 1196680 1321230 1280210 1073650 1300890 TRUE FALSE FALSE 858516.3446 1150512.692 1340851.79 961023.9179 1184982.045 1049045.789 990644.2795 988734.1298 1166714.846 975138.6766 0.880404362 1.179845205 1.37503703 0.985525383 1.21519336 1.075791386 1.015900921 1.013942072 1.196460436 1 19.89524788 -6.501830081 23.30819147 1.056038891 1.136970431 0.057536661 0.134028465 930.2951496 1030163.675 0.047560759 0.041427743 3.15E-07 6.501830081 0.08093154 GSS(ph)YSSIPK ddPTM_HeLa_A485_30min_R1 2 GSSYSSIPK 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 GS(0.001)S(0.998)YS(0.001)SIPK;GS(0.001)S(0.997)YS(0.001)S(0.001)IPK ; 133.81 0.00020506 573340000 1141110 1208050 1139080 1414360 1721080 1306290 1876000 2098250 1319220 1949260 TRUE FALSE FALSE 1394945.983 1349320.939 1560473.093 1491622.905 1549723.232 1374685.324 1475177.274 1583650.898 1583975.353 1463345.355 0.953258216 0.922079627 1.066373763 1.019323907 1.059027677 0.939412777 1.008085527 1.082212679 1.082434401 1 20.48083886 -4.754140006 24.99948656 1.031381243 0.937668887 0.444947869 0.042185512 158.2889662 542107.9357 0.011413327 0.028898377 1.76E-05 4.754140006 -0.093712356 GSS(ph)YSSIPK ddPTM_HeLa_A486_30min_R1 3 GSSYSSIPK 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 GS(0.002)S(0.996)YS(0.001)S(0.001)IPK;GS(0.002)S(0.953)YS(0.041)S(0.004)IPK;GS(0.001)S(0.995)YS(0.001)S(0.003)IPK ;; 155.11 4.24E-05 899200000 2313540 2557490 1721750 1036130 2660880 2705950 3243710 3220760 2007220 3039800 TRUE FALSE FALSE 2151372.793 2354825.178 2388457.71 2412163.003 2327127.619 2372117.401 2432099.45 2487463.257 2181207.446 2278614.294 0.944158385 1.033446154 1.048206235 1.058609616 1.021290714 1.041035074 1.067358989 1.091656128 0.957251717 1 21.11972531 -4.262795203 4.432215246 1.040616891 0.937575217 0.365612681 0.035602887 0.197196068 9.657071877 0.00853661 0.063749344 5.46E-05 4.262795203 -0.103041674 GSSAAASPGS(ph)PPPGR ddPTM_HeLa_A485_30min_R1 3 GSSAAASPGSPPPGR 15 0 Q86UX6 Q86UX6 STK32C Serine/threonine-protein kinase 32C 1 0 GSSAAAS(0.002)PGS(0.998)PPPGR;GSSAAASPGS(1)PPPGR;GSSAAAS(0.082)PGS(0.918)PPPGR ;; 160.63 8.66E-08 0 317824 416495 442800 335875 471231 408692 449516 502828 386441 446526 TRUE FALSE FALSE 388522.8523 465200.4672 606610.1464 354223.0008 424313.587 430090.4812 353473.2344 379508.6446 463996.1641 335215.2859 1.159024867 1.387766271 1.809613618 1.056703007 1.265794267 1.283027652 1.054466336 1.132134066 1.384173645 1 18.35472841 -5.313777364 24.99869057 1.17767996 1.44570097 0.329743529 0.185185298 395.8020095 189049.7535 0.052181829 0.077398214 4.86E-06 5.313777364 0.268021011 GSSAAASPGS(ph)PPPGR ddPTM_HeLa_A486_30min_R1 3 GSSAAASPGSPPPGR 15 0 Q86UX6 Q86UX6 STK32C Serine/threonine-protein kinase 32C 1 0 GSSAAASPGS(1)PPPGR;GSSAAASPGS(1)PPPGR;GSSAAAS(0.034)PGS(0.965)PPPGR ;; 186.42 6.39E-18 425741000 369800 426026 390448 124603 481964 345865 371206 390549 350573 387615 TRUE FALSE FALSE 343878.9296 392266.1482 541639.9222 290082.0811 421511.581 303195.6928 278326.3326 301629.5183 380960.9499 290553.681 1.183529764 1.350064287 1.864164722 0.998376892 1.450718433 1.043510073 0.957917076 1.038119762 1.311155132 1 18.14844521 -6.020596861 1.501256925 1.067648382 1.410818723 0.273930042 0.229460827 0.519158851 2.387444182 0.09364038 0.102751252 9.54E-07 6.020596861 0.343170341 GSSANASKWS(ph)PPQNYK ddPTM_HeLa_A485_30min_R1 2 GSSANASKWSPPQNYK 16 1 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 GSSANAS(0.022)KWS(0.978)PPQNYK;GSSANAS(0.003)KWS(0.997)PPQNYK ; 132.45 6.20E-06 1570540000 681030 1027340 610090 621790 1172810 1391610 1976650 2755700 706890 911290 TRUE FALSE FALSE 832522.774 1147478.476 835787.679 655756.8132 1056040.918 1464472.548 1554322.58 2079860.254 848756.339 684122.174 1.216921196 1.677300517 1.221693596 0.95853758 1.54364375 2.140659378 2.271995615 3.040188336 1.240650239 1 19.38389447 -6.128973781 3.92696253 2.085592314 1.290348783 0.221353515 0.558638872 0.29587197 7.910868336 0.184908294 0.186203252 7.43E-07 6.128973781 -0.795243531 GSSANASKWS(ph)PPQNYK ddPTM_HeLa_A486_30min_R1 2 GSSANASKWSPPQNYK 16 1 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 GSSANAS(0.001)KWS(0.999)PPQNYK;GS(0.025)S(0.023)ANAS(0.016)KWS(0.936)PPQNYK ; 108.45 0.00010693 1138170000 1540320 1032110 682610 593430 1523040 1135970 1786280 1903770 770350 1980690 TRUE FALSE FALSE 1432351.522 950321.8447 946934.8729 1381535.03 1332006.121 995825.5711 1339333.851 1470323.13 837124.5583 1484712.332 0.964733364 0.640071362 0.637790131 0.930506874 0.897147611 0.670719539 0.902083065 0.990308424 0.563829464 1 20.501752 -10.79659893 2.630227556 1.057781232 0.801770486 0.138352482 0.149887415 94375704.8 70110476.5 34946897.68 0.039454444 1.60E-11 10.79659893 -0.256010747 GSSDGRGS(ph)DS(ph)ESDLPHR ddPTM_HeLa_A485_30min_R1 3 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 GSSDGRGS(0.999)DS(0.619)ES(0.381)DLPHR;GSSDGRGS(1)DS(0.983)ES(0.017)DLPHR;GSSDGRGS(1)DS(0.901)ES(0.099)DLPHR ;; 180.45 1.66E-17 5483050000 2226400 3367130 3557000 2025660 3799540 3252730 3530370 3859630 3046330 2945820 TRUE FALSE FALSE 2721654.999 3760886.563 4872882.319 2136316.677 3421244.457 3423037.913 2776077.609 2913049.691 3657700.488 2211481.288 1.230693207 1.700618759 2.203447231 0.966011645 1.547037488 1.547848463 1.255302328 1.317239131 1.653959502 1 21.0765816 -12.34301352 0.148524203 2.92E-12 1.675851568 0.172082266 0.319224387 134.6152024 1.896076043 44.22652429 1.843608984 4.54E-13 12.34301352 1.675851568 GSSDGRGS(ph)DS(ph)ESDLPHR ddPTM_HeLa_A486_30min_R1 3 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 GSSDGRGS(1)DS(0.967)ES(0.033)DLPHR;GSS(0.002)DGRGS(0.997)DS(0.838)ES(0.162)DLPHR;GSSDGRGS(1)DS(0.5)ES(0.5)DLPHR ;; 160.36 9.62E-12 4974050000 1724990 1954260 1794880 260995 2280200 1530870 1642030 1869060 1760760 1547530 TRUE FALSE FALSE 1604077.109 1799397.32 2489905.605 607609.55 1994196.054 1342006.824 1231176.726 1443515.839 1913384.094 1160018.415 1.382803142 1.551179961 2.146436274 0.523793021 1.719107238 1.156884069 1.061342398 1.244390451 1.649442862 1 20.14571628 -5.242624824 24.99998744 1.218608437 1.679243705 0.282775137 0.363101823 1154.200718 1533651.224 0.095127573 0.164412359 5.72E-06 5.242624824 0.460635268 GSSDGRGS(ph)DSES(ph)DLPHR ddPTM_HeLa_A485_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 GS(0.001)S(0.001)DGRGS(0.992)DS(0.398)ES(0.609)DLPHR 112.47 0.00014947 571830000 169580 267730 309000 164470 325860 278700 303210 353580 270340 264490 TRUE FALSE FALSE 207302.486 299038.6946 423311.9586 173454.5796 293416.2342 293292.301 238426.7065 266863.9506 324594.7583 198557.5106 1.044042531 1.506055821 2.13193627 0.873573501 1.477739288 1.47711512 1.200794197 1.344013378 1.634764444 1 17.59919741 -5.283736643 24.98988807 1.313485978 1.55521627 0.125833893 0.325380216 1831.077881 2052195.22 0.091359565 0.135629628 5.20E-06 5.283736643 0.241730292 GSSDGRGS(ph)DSES(ph)DLPHR ddPTM_HeLa_A486_30min_R1 1 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 GSSDGRGS(0.998)DS(0.142)ES(0.859)DLPHR 124.31 2.21E-05 397000000 228000 237150 223070 30862 271070 179120 203490 204010 205360 186730 TRUE FALSE FALSE 212018.3774 218357.3703 309448.678 71848.29568 237069.873 157021.9956 152574.6497 157561.3765 223160.7701 139971.5926 1.514724334 1.560012044 2.210796293 0.513306267 1.693699904 1.12181331 1.090040107 1.125666813 1.594329006 1 17.09477453 -5.248152784 24.98989575 1.185324403 1.741660936 0.377929192 0.351132548 868.5154029 1633531.693 0.091311128 0.156992982 5.65E-06 5.248152784 0.556336533 GSSDGRGS(ph)DSESDLPHR ddPTM_HeLa_A485_30min_R1 4 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GSSDGRGS(0.984)DS(0.015)ES(0.001)DLPHR;GS(0.001)SDGRGS(0.998)DS(0.001)ESDLPHR;GSSDGRGS(0.998)DS(0.001)ES(0.001)DLPHR;GSSDGRGS(0.95)DS(0.047)ES(0.002)DLPHR ;;; 147.75 3.65E-08 10231860000 717720 1098070 1248870 709800 1287780 1041660 1162120 1316850 1110430 1047410 TRUE FALSE FALSE 877374.3379 1226479.735 1710878.983 748574.5767 1159564.102 1096199.707 913823.5684 993890.4728 1333283.116 786309.9632 1.115812312 1.559791675 2.175832767 0.952009528 1.474690842 1.394106343 1.162167098 1.263993233 1.695620274 1 19.58473861 -5.291443405 24.99986404 1.296780037 1.611410788 0.194315195 0.31514978 1182.224672 985047.1639 0.088290592 0.13097435 5.11E-06 5.291443405 0.314630751 GSSDGRGS(ph)DSESDLPHR ddPTM_HeLa_A486_30min_R1 6 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GSSDGRGS(0.885)DS(0.115)ESDLPHR;GSSDGRGS(0.983)DS(0.017)ESDLPHR;GSSDGRGS(0.956)DS(0.028)ES(0.015)DLPHR;GSSDGRGS(0.988)DS(0.009)ES(0.003)DLPHR;GS(0.001)S(0.001)DGRGS(0.975)DS(0.023)ESDLPHR;GS(0.002)S(0.002)DGRGS(0.994)DS(0.002)ESDLPHR ;;;;; 172.81 1.62E-12 11145030000 1912670 2141760 2038490 277318 2692970 1757500 1949060 2113340 1892460 1871190 TRUE FALSE FALSE 1778601.71 1972039.137 2827847.921 645610.3189 2355192.592 1540677.519 1461384.573 1632178.616 2056499.957 1402631.845 1.268046007 1.405956342 2.016101325 0.460284943 1.679123856 1.098419036 1.041887491 1.163654328 1.466172299 1 20.41970496 -5.238691361 24.99825536 1.154654473 1.547626591 0.243230489 0.348115374 1247.623504 1371036.882 0.090672485 0.15691052 5.77E-06 5.238691361 0.392972118 GSSDGRGS(ph)DSESDLPHRK ddPTM_HeLa_A485_30min_R1 1 GSSDGRGSDSESDLPHRK 18 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GS(0.044)S(0.044)DGRGS(0.911)DS(0.001)ESDLPHRK 81.665 0.0011119 140890000 86263 114800 100780 90810 130680 114320 125470 145850 98425 129340 TRUE FALSE FALSE 105451.9067 128224.8614 138062.7158 95770.72036 117669.0404 120305.6184 98662.3095 110080.0588 118177.9947 97097.91833 1.086036741 1.320572712 1.421891614 0.986331345 1.211859558 1.239013364 1.01611148 1.133701533 1.217101218 1 16.56715275 -9.632367802 0.097125475 0.731343139 1.386242713 0.17828478 0.124648907 82.08968777 1.855092073 9.334009361 3.612167415 2.33E-10 9.632367802 0.654899574 GSSDGRGS(ph)DSESDLPHRK ddPTM_HeLa_A486_30min_R1 1 GSSDGRGSDSESDLPHRK 18 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GSS(0.001)DGRGS(0.996)DS(0.003)ESDLPHRK 93.407 0.00027779 97849000 126000 120380 82952 19022 136080 116450 119730 119350 101100 130070 TRUE FALSE FALSE 117168.0507 110840.6504 115073.2359 44284.17732 119011.5775 102083.583 89772.28763 92176.61039 109863.4294 97499.62539 1.201728214 1.136831551 1.180242852 0.454198436 1.220636254 1.04701513 0.920744949 0.945404765 1.126808734 1 16.57310906 GSSERGS(ph)PIEK ddPTM_HeLa_A485_30min_R1 2 GSSERGSPIEK 11 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 GS(0.162)S(0.162)ERGS(0.676)PIEK;GS(0.012)S(0.012)ERGS(0.977)PIEK ; 66.059 0.008702 1417530000 1450200 1436600 1340730 1683880 1896610 1738220 2108290 1976410 1465010 2280900 TRUE FALSE FALSE 1772791.987 1604597.873 1836721.819 1775866.101 1707776.849 1829230.511 1657836.618 1491692.349 1759024.069 1712313.607 1.035319687 0.937093455 1.072655039 1.037114985 0.99735051 1.068280077 0.968185157 0.871156044 1.027279151 1 20.70751552 -6.937684797 9.335751436 0.953521479 1.021974071 0.216530264 0.052265481 0.43436683 61.00997243 0.02118653 0.014267828 1.15E-07 6.937684797 0.068452592 GSSERGS(ph)PIEK ddPTM_HeLa_A486_30min_R1 2 GSSERGSPIEK 11 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 GS(0.008)S(0.009)ERGS(0.984)PIEK;GS(0.006)S(0.007)ERGS(0.988)PIEK ; 63.681 0.010992 1736890000 2051850 2052800 1370750 884950 2198940 2130620 2517600 2509000 1666510 2733300 TRUE FALSE FALSE 1908025.911 1890128.652 1901541.11 2060208.323 1923128.441 1867765.767 1887669.852 1937755.471 1810964.429 2048863.889 0.931260452 0.92252524 0.92809538 1.005536939 0.938631625 0.911610467 0.92132516 0.945770718 0.883887133 1 20.96639272 -6.003417228 24.97801256 0.928062131 0.947315193 0.027981915 0.035196015 457.728152 3345761.982 0.010889995 0.012087838 9.92E-07 6.003417228 0.019253062 GSSFRYS(ph)GR ddPTM_HeLa_A486_30min_R1 1 GSSFRYSGR 9 1 O94887-3;O94887-2;O94887;H7C3M7;X6R7S7;Q6ZUT3-2;Q6ZUT3 O94887-3 FARP2;FRMD7 "FERM, RhoGEF and pleckstrin domain-containing protein 2;FERM domain-containing protein 7" 1 0 GSSFRY(0.009)S(0.99)GR 66.262 0.0092222 115910000 61670 64967 62115 20786 82694 52462 64066 65110 49544 62964 TRUE FALSE FALSE 57347.25146 59818.77831 86167.5915 48390.85847 72321.74743 45989.77183 48036.00918 50285.87434 53838.51381 47197.40457 1.215050954 1.267416691 1.825684956 1.025286431 1.532324671 0.974413154 1.017768024 1.06543728 1.140709204 1 15.52641991 -6.271307983 24.93386414 1.042386756 1.37309329 0.40730557 0.201129358 694.3570771 1754347.282 0.068804832 0.061398448 5.35E-07 6.271307983 0.330706534 GSSGCSEAGGAGHEEGRAS(ph)PLRR ddPTM_HeLa_A485_30min_R1 5 GSSGCSEAGGAGHEEGRASPLRR 23 2 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR ;;;; 263.59 1.05E-61 2562507000 487851 703707 767126 393053 737245 553288 628450 556751 676162 623502 TRUE FALSE FALSE 596371.7719 785999.4122 1050917.83 414524.4901 663842.2992 582257.3041 494176.5235 420206.9443 811861.5113 468074.4261 1.274096038 1.679218877 2.245193866 0.885595254 1.418240908 1.243941715 1.055764844 0.897735319 1.734470986 1 18.83637842 -5.276481508 24.99882088 1.180122085 1.727474577 0.380371052 0.325328683 814.8984126 1354294.411 0.090379043 0.134653706 5.29E-06 5.276481508 0.547352492 GSSGCSEAGGAGHEEGRAS(ph)PLRR ddPTM_HeLa_A486_30min_R1 5 GSSGCSEAGGAGHEEGRASPLRR 23 2 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR ;;;; 267.63 4.71E-62 2269994000 680533 784833 808078 83626.9 907707 696574 690842 697755 757344 515699 TRUE FALSE FALSE 632831.151 722639.9748 1120987.443 194687.6495 793853.924 610637.7821 517986.0246 538891.4184 822991.1877 386564.6138 1.637064357 1.869389874 2.899870818 0.503635466 2.053612503 1.579652561 1.339972688 1.394052635 2.128987389 1 18.56035005 -5.251379132 24.99973374 1.473626236 2.108836376 0.264520282 0.53592562 1048.167626 2604693.041 0.141320359 0.241199485 5.61E-06 5.251379132 0.63521014 GSSGENNNPGS(ph)PTVSNFR ddPTM_HeLa_A485_30min_R1 1 GSSGENNNPGSPTVSNFR 18 0 D6R8Z7;D6RDZ7;D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3 D6R8Z7 TSC22D3 1 0 GSSGENNNPGS(1)PTVSNFR 457.57 6.55E-226 476640000 155640 212520 206250 131860 196840 169530 184380 223380 171880 167640 TRUE FALSE FALSE 190261.581 237372.3653 282550.4578 139063.1779 177241.9185 178406.3287 144985.7068 168595.7048 206374.7394 125850.4332 1.511807121 1.886146589 2.245129005 1.104987678 1.408353662 1.417605996 1.152047737 1.339651366 1.639841312 1 16.94135066 -5.271215733 24.98277683 1.312713413 1.881539484 0.560869288 0.23739455 488.2016103 1247563.602 0.066242544 0.099640413 5.36E-06 5.271215733 0.568826071 GSSGENNNPGS(ph)PTVSNFR ddPTM_HeLa_A486_30min_R1 2 GSSGENNNPGSPTVSNFR 18 0 D6R8Z7;D6RDZ7;D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3 D6R8Z7 TSC22D3 1 0 GSSGENNNPGS(0.996)PT(0.004)VSNFR;GSSGENNNPGS(0.938)PT(0.06)VSNFR ; 286.92 8.32E-70 1084120000 1065970 1101700 1006410 279462 1193110 878030 988530 1007200 890700 1122920 TRUE FALSE FALSE 991251.0077 1014397.28 1396118.905 650601.6592 1043459.018 769707.5858 741189.3384 777882.547 967906.5932 841733.523 1.177630426 1.205128763 1.658623384 0.772930674 1.239654819 0.914431426 0.880551051 0.92414348 1.149896691 1 19.68300405 -5.273332232 24.99736855 0.983483557 1.33292767 0.47793849 0.174165011 636.2146234 1337246.729 0.048194497 0.072113332 5.33E-06 5.273332232 0.349444113 GSSGS(ph)PAHAESYSSGGGGQQK ddPTM_HeLa_A485_30min_R1 5 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.022)S(0.164)GS(0.815)PAHAESYSSGGGGQQK;GSS(0.001)GS(0.999)PAHAESYSSGGGGQQK;GS(0.018)S(0.125)GS(0.856)PAHAESYSSGGGGQQK;GSS(0.001)GS(0.98)PAHAES(0.019)YSSGGGGQQK;GS(0.185)S(0.185)GS(0.629)PAHAESYSSGGGGQQK ;;;; 372.07 2.56E-142 3850916000 1997039 2619880 2539157 1527879 2842410 2495891 2995740 3278410 2165452 2361550 TRUE FALSE FALSE 2441273.436 2926252.176 3478496.837 1611343.161 2559409.68 2626571.993 2355675.676 2474374.807 2600038.354 1772859.046 1.377026245 1.650583662 1.962083136 0.908895247 1.44366225 1.481545867 1.328743919 1.395697426 1.466579286 1 20.75764641 -12.7770731 0.12415043 3.26E-13 1.663762049 0.236357415 0.246935582 162.2929166 1.741783359 44.79324931 2.386436072 1.67E-13 12.7770731 1.663762049 GSSGS(ph)PAHAESYSSGGGGQQK ddPTM_HeLa_A486_30min_R1 3 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.022)S(0.135)GS(0.844)PAHAESYSSGGGGQQK;GS(0.017)S(0.121)GS(0.861)PAHAESYSSGGGGQQK;GSS(0.002)GS(0.998)PAHAESYSSGGGGQQK ;; 351.09 5.02E-128 1979270000 2422000 2284360 1799500 200666 2321690 2039190 2240400 2083220 2031770 1650190 TRUE FALSE FALSE 2252230.307 2103338.994 2496314.592 467160.5891 2030481.991 1787615.471 1679828.223 1608916.282 2207885.46 1236971.683 1.820761411 1.700393811 2.01808548 0.37766474 1.64149432 1.445154724 1.358016717 1.300689664 1.784911886 1 20.23838104 GSSHS(ph)PDHPGCLMEN ddPTM_HeLa_A486_30min_R1 1 GSSHSPDHPGCLMEN 15 0 O95149 O95149 SNUPN Snurportin-1 1 0 GS(0.001)S(0.001)HS(0.998)PDHPGCLMEN 73.022 0.0030436 0 104470 145060 157980 31951 157820 139230 152070 131520 155870 108990 TRUE FALSE FALSE 97147.19248 133564.9173 219154.0869 74383.54271 138024.744 122053.2182 114020.4776 101575.7671 169380.9371 81698.19459 1.1890984 1.634857636 2.682483841 0.910467399 1.689446685 1.493952453 1.395630321 1.243304917 2.073251899 1 16.31801658 -5.312989794 24.99984072 1.426687627 1.815429093 0.153720919 0.463835539 692.7057076 335932.3723 0.128446466 0.190517111 4.86E-06 5.312989794 0.388741466 GSSMGVRNS(ph)PQALR ddPTM_HeLa_A486_30min_R1 1 GSSMGVRNSPQALR 14 1 Q7L7X3-3;Q7L7X3 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 GSSMGVRNS(1)PQALR 100.77 0.00031227 425800000 202520 207190 225850 147360 459840 258620 363990 373340 194880 273490 TRUE FALSE FALSE 188324.3938 190771.5098 313305.1685 343061.5272 402162.5794 226714.0939 272915.8521 288338.632 211772.3553 205006.3239 0.918627242 0.930564025 1.528270751 1.673419242 1.961708165 1.105888294 1.331255773 1.406486524 1.033004013 1 17.64530889 -7.767432528 21.87802884 1.016500323 1.369992239 0.16424917 0.306137743 63.22235767 230734.4474 0.292432014 0.084404821 1.71E-08 7.767432528 0.353491917 GSSPS(ph)HSATSVHTSV ddPTM_HeLa_A485_30min_R1 3 GSSPSHSATSVHTSV 15 0 F8WA39;Q13613 F8WA39 MTMR1 Myotubularin-related protein 1 1 0 GS(0.302)S(0.302)PS(0.394)HS(0.002)ATSVHTSV;GSS(0.008)PS(0.938)HS(0.053)AT(0.001)SVHTSV;GSS(0.117)PS(0.798)HS(0.083)AT(0.001)SVHTSV ;; 196.58 2.15E-19 786720000 365159 1143290 1558420 233190 1361870 734740 770580 863490 940340 449676 TRUE FALSE FALSE 446387.3598 1276987.82 2134944.409 245928.5792 1226277.441 773209.8503 605939.2879 651717.7236 1129057.613 337580.0489 1.322315585 3.782770411 6.324261213 0.728504484 3.632553064 2.290448896 1.794949938 1.930557584 3.34456262 1 18.36487012 -5.288409127 24.99910905 2.200551829 3.807082959 0.234744773 1.404420911 1103.297 1022678.301 0.392771091 0.582742732 5.15E-06 5.288409127 1.60653113 GSSPS(ph)HSATSVHTSV ddPTM_HeLa_A486_30min_R1 1 GSSPSHSATSVHTSV 15 0 F8WA39;Q13613 F8WA39 MTMR1 Myotubularin-related protein 1 1 0 GSS(0.009)PS(0.991)HSATSVHTSV 162.93 6.44E-12 310410000 268820 356470 517810 53570 477040 194880 228420 240030 375470 147830 TRUE FALSE FALSE 249977.1062 328222.019 718319.8994 124713.6673 417205.195 170837.687 171266.9 185380.4088 408016.0419 110812.4058 2.255858488 2.961960952 6.482305788 1.125448603 3.764968299 1.541683765 1.545557095 1.672921073 3.68204299 1 16.75775988 GSSPSIRPIQGSQGSS(ph)SPVEK ddPTM_HeLa_A485_30min_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 F8W6N3;Q92560;H0Y8E8 F8W6N3;H0Y8E8 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 GSSPSIRPIQGSQGS(0.113)S(0.497)S(0.389)PVEK 127.53 7.03E-07 419110000 215790 213100 188190 281350 239140 228280 285820 210740 209800 384690 TRUE FALSE FALSE 263791.741 238020.1913 257809.3122 296719.4381 215330.3819 240232.3878 224752.2221 159055.6846 251904.9356 288793.8627 0.913425717 0.824187152 0.892710495 1.027443711 0.745619661 0.831847275 0.778244454 0.550758534 0.872265543 1 18.13968056 -5.79140105 24.9932778 0.774852792 0.9064429 0.182290649 0.116686671 305.420657 254772.6412 0.035638481 0.040415419 1.62E-06 5.79140105 0.131590108 GSSPT(ph)PPCS(ph)PVQPSK ddPTM_HeLa_A485_30min_R1 2 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 0 GS(0.002)S(0.021)PT(0.977)PPCS(1)PVQPSK;GS(0.002)S(0.014)PT(0.985)PPCS(1)PVQPSK ; 194.77 3.41E-18 336620000 331620 285310 304230 381710 446420 289510 373040 342150 315810 453470 TRUE FALSE FALSE 405387.7249 318674.5226 416777.3371 402561.8508 401972.8573 304668.2959 293336.9565 258237.176 379190.1702 340428.2745 1.190816848 0.936098869 1.224273564 1.18251591 1.180785756 0.894955909 0.861670368 0.758565593 1.113862151 1 18.37699134 -6.266188218 24.56697703 0.906712363 1.13813118 0.470271392 0.114250098 272.960953 1412093.294 0.039322555 0.035825484 5.42E-07 6.266188218 0.231418817 GSSPT(ph)PPCS(ph)PVQPSK ddPTM_HeLa_A486_30min_R1 2 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 0 GSS(0.004)PT(0.995)PPCS(1)PVQPSK;GSSPT(1)PPCS(1)PVQPSK ; 281.68 4.64E-58 588280000 438200 552480 383750 202665 599110 500870 593130 576360 420400 544330 TRUE FALSE FALSE 407484.4429 508699.4727 532348.2772 471814.3621 523964.0373 439077.7519 444722.6005 445135.4099 456840.6105 408026.225 0.998672188 1.246732297 1.304691328 1.156333425 1.284143041 1.076101792 1.089936316 1.090948039 1.119635412 1 18.63830236 -6.286644047 24.06777421 1.081921786 1.204415216 0.343776235 0.084355019 570.5515531 544813.4491 0.029351234 0.025898475 5.17E-07 6.286644047 0.12249343 GSSS(ph)SPGAADASR ddPTM_HeLa_A485_30min_R1 1 GSSSSPGAADASR 13 0 H7C3S3;B7XGB9 H7C3S3 PPM1M;ppm1m 1 0 GS(0.015)S(0.082)S(0.451)S(0.451)PGAADASR 96.866 0.0010645 159600000 176740 312360 348280 153320 307180 275260 264050 308640 273390 220320 TRUE FALSE FALSE 216055.2033 348887.7848 477123.2651 161695.4834 276596.0806 289672.188 207633.5604 232945.5561 328256.8653 165398.2787 1.306272381 2.109379781 2.884693051 0.977612855 1.67230326 1.751361564 1.255355026 1.408391659 1.984644991 1 17.33558469 -5.278857666 24.99565325 1.468184181 2.101041687 0.300281831 0.462941862 1026.923868 1473657.798 0.130008519 0.193347787 5.26E-06 5.278857666 0.632857507 GSSSAS(ph)IVK ddPTM_HeLa_A485_30min_R1 3 GSSSASIVK 9 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 GSS(0.01)S(0.358)AS(0.633)IVK;GSS(0.005)S(0.311)AS(0.684)IVK;GSS(0.004)S(0.17)AS(0.825)IVK ;; 83.397 0.0043363 460880000 779140 652800 446280 743130 724620 621100 1110810 1150070 936760 1569910 TRUE FALSE FALSE 952457.005 729139.2814 611377.5433 783725.3102 652474.2885 653619.8356 873476.369 868013.5293 1124759.14 1178560.329 0.808152949 0.618669459 0.518749468 0.664985314 0.553619762 0.55459175 0.741138444 0.736503264 0.954350076 1 20.16859418 -7.611531229 1.403043174 1.007986971 0.618545407 0.730908578 0.082086635 0.208748084 0.756577034 0.076352356 0.024649255 2.45E-08 7.611531229 -0.389441565 GSSSAS(ph)IVK ddPTM_HeLa_A486_30min_R1 1 GSSSASIVK 9 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 GSS(0.001)S(0.088)AS(0.911)IVK 97.452 0.0023478 287980000 283060 277270 180290 115810 300440 368850 354850 444560 278840 442720 TRUE FALSE FALSE 263218.9557 255298.1154 250103.1163 269611.5327 262756.0137 323345.0372 266062.7768 343343.3927 303010.0757 331860.0304 0.793162573 0.769294558 0.753640371 0.812425445 0.791767582 0.974341613 0.801731912 1.034603029 0.913065895 1 18.34021535 -6.513678127 0.677933055 0.987071356 0.761889614 0.636396889 0.060330733 0.446332535 0.429871175 0.046309404 0.037783335 3.06E-07 6.513678127 -0.225181742 GSSSQGPSQTS(ph)TPTDVTAIHL ddPTM_HeLa_A485_30min_R1 1 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 0 GSSSQGPS(0.018)QT(0.088)S(0.542)T(0.347)PT(0.006)DVTAIHL 79.466 0.0032971 65745000 42378 71340 69640 41266 89211 60989 66014 90050 69196 69768 TRUE FALSE FALSE 51804.8399 79682.59242 95402.73396 43520.25709 80328.8396 64182.28973 51909.56962 67965.09631 83083.0025 52376.12158 0.989092707 1.521353434 1.821492907 0.830917903 1.533692018 1.225411271 0.991092277 1.297635148 1.586276341 1 15.67662161 -5.25738892 24.98867179 1.22678774 1.451717007 0.117932778 0.29116083 809.2059413 4992246.947 0.079294841 0.131117893 5.53E-06 5.25738892 0.224929266 GSSSQGPSQTS(ph)TPTDVTAIHL ddPTM_HeLa_A486_30min_R1 1 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 0 GS(0.001)S(0.001)S(0.001)QGPS(0.036)QT(0.128)S(0.503)T(0.323)PT(0.006)DVTAIHL 76.713 0.0040998 38675000 73369 79984 74593 17521 85623 65833 76789 70215 60020 71968 TRUE FALSE FALSE 68226.21198 73645.77654 103477.4073 40789.77346 74883.36494 57711.1938 57575.58001 54228.57728 65222.58193 53946.74437 1.264695632 1.365157016 1.918139982 0.756111864 1.388097944 1.069780846 1.067267 1.00522428 1.209017943 1 15.71924828 -5.268999223 24.99944628 1.08403625 1.500913496 0.464497982 0.218557318 517.3231499 1710721.433 0.059775325 0.09057769 5.38E-06 5.268999223 0.416877245 GSSSQGPSQTST(ph)PTDVTAIHL ddPTM_HeLa_A485_30min_R1 2 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 0 GSSSQGPS(0.001)QT(0.011)S(0.256)T(0.725)PT(0.007)DVTAIHL;GSSSQGPS(0.03)QT(0.17)S(0.087)T(0.464)PT(0.249)DVTAIHL ; 171.04 4.10E-13 89493000 67044 100726 105861 76451 108767 90027 100890 117012 88679 102951 TRUE FALSE FALSE 81957.7065 112505.0295 145023.3891 80627.32455 97937.77558 94740.67451 79334.0273 88314.62353 106476.0619 77287.21037 1.060430388 1.455674606 1.876421577 1.043216907 1.267192529 1.225826033 1.026483255 1.142680957 1.377667293 1 16.23794207 -5.337272622 24.99999983 1.162974207 1.463368529 0.306519673 0.213045005 153.1754077 50496.52372 0.060361614 0.089530751 4.60E-06 5.337272622 0.300394322 GSSSS(ph)PGAADASR ddPTM_HeLa_A486_30min_R1 1 GSSSSPGAADASR 13 0 H7C3S3;B7XGB9 H7C3S3 PPM1M;ppm1m 1 0 GS(0.001)S(0.01)S(0.092)S(0.898)PGAADASR 101.55 0.00046368 0 181300 220970 246910 63129 294160 197790 190650 223570 221300 207590 TRUE FALSE FALSE 168591.8062 203459.5324 342520.1645 146967.5024 257263.7099 173388.6808 142947.3535 172667.9915 240482.4622 155608.1128 1.083438409 1.30751237 2.201171637 0.94447198 1.653279544 1.114265045 0.918636894 1.109633607 1.545436532 1 17.24755775 -6.287320246 23.61516479 1.130761575 1.445709881 0.15254827 0.353575395 741.3084005 676408.2174 0.124148077 0.109537887 5.16E-07 6.287320246 0.314948306 GSSSS(ph)SPEHSASSDSTK ddPTM_HeLa_A486_30min_R1 1 GSSSSSPEHSASSDSTK 17 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 GS(0.064)S(0.064)S(0.056)S(0.408)S(0.408)PEHS(0.001)ASSDSTK 80.156 0.0026083 1588500000 887420 922040 848010 76086 1407500 935320 894330 1059500 813970 451260 TRUE FALSE FALSE 825216.4406 848974.1924 1176382.182 177132.0532 1230958.226 819929.728 670559.1747 818274.9787 884525.575 338261.5588 2.439580908 2.509815763 3.477729443 0.523654103 3.639072172 2.423951841 1.982368842 2.419059918 2.614916038 1 18.36777971 -10.55869675 2.665474041 0.904051244 2.443120575 0.226757523 0.802014985 19045263.34 18473008.8 13043439.65 0.201622357 2.76E-11 10.55869675 1.53906933 GSSSSS(ph)PEHSASSDSTK ddPTM_HeLa_A485_30min_R1 2 GSSSSSPEHSASSDSTK 17 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 GSS(0.003)S(0.012)S(0.166)S(0.808)PEHS(0.011)ASSDSTK;GSSS(0.001)S(0.065)S(0.925)PEHS(0.009)ASSDSTK ; 302.15 9.73E-69 649250000 636840 639870 643220 646200 1007190 704190 893780 782650 850810 1039300 TRUE FALSE FALSE 778502.8609 714697.2304 881173.8446 681500.2697 906910.6271 741060.2995 702816.6015 590703.8604 1021559.763 780221.6369 0.997797067 0.916018214 1.129389141 0.873470098 1.162375643 0.949807419 0.900790965 0.757097512 1.309319961 1 19.57352448 -7.771822598 24.99988053 1.154659808 0.966402976 0.256657006 0.131665947 324.4871963 781247.3882 0.117658632 0.031721804 1.69E-08 7.771822598 -0.188256832 GSSSSS(ph)PEHSASSDSTK ddPTM_HeLa_A486_30min_R1 2 GSSSSSPEHSASSDSTK 17 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 GSSSS(0.002)S(0.997)PEHSASSDSTK;GSS(0.003)S(0.015)S(0.103)S(0.732)PEHS(0.136)AS(0.005)S(0.005)DSTK ; 200.63 4.92E-25 355720000 446700 492010 409910 46446 509610 491770 556150 490980 489140 372990 TRUE FALSE FALSE 415388.6368 453021.3357 568638.1298 108128.6353 445689.9619 431100.4174 416995.3876 379194.572 531539.049 279590.8762 1.485701688 1.620300855 2.033822196 0.386738783 1.594079062 1.541897301 1.491448481 1.356248019 1.901131597 1 18.09295776 GSST(ph)PTKGIENK ddPTM_HeLa_A485_30min_R1 1 GSSTPTKGIENK 12 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;H0YBE9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 GS(0.002)S(0.125)T(0.868)PT(0.004)KGIENK 78.69 0.0083095 426630000 509760 654640 370620 575370 947050 944230 1347800 1474300 597310 985730 TRUE FALSE FALSE 623154.3533 731194.4534 507727.7608 606801.0062 852758.3767 993668.4227 1059831.519 1112725.613 717184.6381 740005.652 0.842094046 0.988093066 0.686113355 0.819995097 1.152367383 1.34278491 1.432193817 1.503671777 0.969161028 1 19.49717676 -5.880002266 3.557878335 1.289490417 0.833352083 0.556862934 0.174087655 0.164028868 4.014255594 0.055969043 0.064808016 1.32E-06 5.880002266 -0.456138335 GSST(ph)PTKGIENK ddPTM_HeLa_A486_30min_R1 1 GSSTPTKGIENK 12 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;H0YBE9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 GS(0.136)S(0.176)T(0.664)PT(0.024)KGIENK 77.324 0.0033223 0 318790 246350 161810 186880 395100 303900 479670 523790 181640 474030 TRUE FALSE FALSE 296444.4672 226828.3288 224467.1654 435066.0844 345542.8738 266407.9078 359651.4926 404534.4513 197384.7014 355329.8026 0.834279774 0.638359989 0.631714998 1.224400771 0.972456775 0.749748279 1.012162475 1.138475997 0.555497175 1 18.43879917 -5.221398445 24.99885204 0.951294647 0.695142356 0.276598799 0.184399544 677.7207784 423122.137 0.049180008 0.085180925 6.01E-06 5.221398445 -0.256152291 GSTFRPHDS(ph)FPK ddPTM_HeLa_A485_30min_R1 1 GSTFRPHDSFPK 12 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GSTFRPHDS(1)FPK 106.82 0.00025481 433180000 411410 413800 326490 496970 452610 398370 576220 625950 340740 711760 TRUE FALSE FALSE 502926.7352 462190.3104 447272.2374 524118.2127 407546.5592 419228.0372 453105.8897 472434.781 409123.3925 534331.331 0.941226363 0.864988227 0.837069083 0.98088617 0.762722557 0.78458442 0.847986752 0.884160733 0.765673598 1 19.02737509 -4.268386759 3.375401185 0.851618102 0.952298095 0.089161098 0.077332731 0.708720411 13.64746552 0.019030424 0.182930703 5.39E-05 4.268386759 0.100679993 GSTFRPHDS(ph)FPK ddPTM_HeLa_A486_30min_R1 2 GSTFRPHDSFPK 12 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 GSTFRPHDS(0.999)FPK;GSTFRPHDS(1)FPK ; 84.41 0.0017179 734990000 786240 817500 523690 318780 863980 834960 1044070 886280 620540 1113330 TRUE FALSE FALSE 731128.6361 752718.3227 726476.7929 742135.9502 755611.5721 731951.1245 782832.643 684493.3914 674328.9068 834544.9214 0.876080625 0.901950636 0.870506517 0.889270225 0.905417495 0.877066178 0.938035357 0.820199577 0.808019903 1 19.67063018 -7.266404871 24.99110923 0.860582311 0.893045851 0 0.052108272 1172.499631 5901105.692 0.025640336 0.012946042 5.41E-08 7.266404871 0.03246354 GSTSSSPYVAASHT(ph)PPINGSDSILGTR ddPTM_HeLa_A485_30min_R1 1 GSTSSSPYVAASHTPPINGSDSILGTR 27 0 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-2;Q99081-4 Q99081 TCF12 Transcription factor 12 1 0 GSTSSSPYVAAS(0.032)HT(0.968)PPINGSDSILGTR 190.25 2.20E-20 602560000 112990 154610 161740 92738 167950 130840 116130 131680 111930 104330 TRUE FALSE FALSE 138124.2357 172690.2946 221574.3566 97804.04211 151228.3083 137690.5801 91317.87681 99385.27353 134393.3243 78322.45105 1.76353311 2.204863258 2.82900182 1.248735718 1.930842386 1.757996312 1.165922103 1.268924455 1.715897837 1 16.25713829 -6.005671959 0.856724505 1.302528955 2.19734566 0.416013324 0.401026731 0.615455589 0.994959728 0.233204875 0.288272109 9.87E-07 6.005671959 0.894816705 GSTSSSPYVAASHT(ph)PPINGSDSILGTR ddPTM_HeLa_A486_30min_R1 2 GSTSSSPYVAASHTPPINGSDSILGTR 27 0 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-2;Q99081-4 Q99081 TCF12 Transcription factor 12 1 0 GSTSSSPYVAAS(0.001)HT(0.999)PPINGSDSILGTR;GSTSSSPYVAAS(0.01)HT(0.99)PPINGSDSILGTR ; 211.09 1.06E-28 787660000 213672 237153 199713 41590 246285 189467 215268 168599 185292 182934 TRUE FALSE FALSE 198694.6962 218360.1326 277047.2221 96823.62184 215393.6388 166092.4879 161405.6695 130212.6882 201353.2597 137126.1357 1.448992165 1.592403457 2.020382334 0.706091668 1.570770136 1.211238741 1.177059856 0.949583298 1.468379888 1 17.06514404 -5.25267749 24.98871849 1.173250945 1.677773704 0.4509357 0.268676585 601.5452463 1715590.066 0.070516766 0.119803852 5.59E-06 5.25267749 0.504522759 GSTTNDPPKQSPGS(ph)TSPKPPHTLSR ddPTM_HeLa_A485_30min_R1 1 GSTTNDPPKQSPGSTSPKPPHTLSR 25 2 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 GSTTNDPPKQS(0.062)PGS(0.31)T(0.31)S(0.31)PKPPHT(0.004)LS(0.004)R 65.275 0.006641 670460000 333750 422650 195240 296750 423690 498020 712420 894500 288270 461910 TRUE FALSE FALSE 407991.5361 472075.2409 267467.4006 312960.7011 381505.9359 524095.5571 560205.6471 675122.4725 346123.1448 346764.3378 1.176567171 1.361371945 0.771323263 0.902516975 1.100187921 1.511388283 1.615522665 1.946920138 0.998150926 1 18.40359601 -6.227936496 5.490263603 1.48688837 1.050827964 0.23615917 0.30304868 0.238950204 20.78011983 0.10226436 0.099917324 5.92E-07 6.227936496 -0.436060406 GSTTNDPPKQSPGS(ph)TSPKPPHTLSR ddPTM_HeLa_A486_30min_R1 1 GSTTNDPPKQSPGSTSPKPPHTLSR 25 2 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 GSTTNDPPKQS(0.001)PGS(0.332)T(0.332)S(0.332)PKPPHT(0.001)LS(0.001)R 73.548 0.0034744 725640000 112190 77461 45413 36137 97039 87099 128850 119140 65124 173690 TRUE FALSE FALSE 104326.0603 71322.70825 62998.1298 84128.76226 84867.46377 76353.61094 96610.36716 92014.42281 70769.00076 130196.8935 0.801294544 0.547806529 0.483868149 0.646165665 0.651839391 0.586447256 0.742032813 0.706732859 0.543553681 1 16.9903355 -14 0.350036859 5.236802075 0.620801017 0.572726348 0.093843317 318.3580063 2.618471088 1012.072561 0.073414156 1.00E-14 14 -4.616001058 GSTTNDPPKQSPGSTS(ph)PKPPHTLSR ddPTM_HeLa_A485_30min_R1 1 GSTTNDPPKQSPGSTSPKPPHTLSR 25 2 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 GSTTNDPPKQS(0.009)PGS(0.075)T(0.075)S(0.753)PKPPHT(0.043)LS(0.043)R 41.483 0.031546 846770000 114370 156190 62066 100030 137460 166560 218480 279210 98957 150850 TRUE FALSE FALSE 139811.2119 174455.0618 85026.79618 105494.3856 123773.9997 175280.824 171799.9632 210733.3097 118816.7622 113245.8712 1.234581097 1.54049821 0.75081586 0.931551716 1.092966997 1.547789974 1.517052775 1.860847619 1.049192884 1 16.78909893 -6.253024126 23.91820973 1.456409383 1.104117047 0.167793681 0.301978043 525.4669535 1493505.546 0.101458031 0.099761256 5.58E-07 6.253024126 -0.352292337 GSVIS(ph)PTELEAPILVPHTAQR ddPTM_HeLa_A485_30min_R1 2 GSVISPTELEAPILVPHTAQR 21 0 Q8N1B4;Q8N1B4-2 Q8N1B4 VPS52 Vacuolar protein sorting-associated protein 52 homolog 1 0 GS(0.059)VIS(0.934)PT(0.007)ELEAPILVPHTAQR;GS(0.035)VIS(0.803)PT(0.162)ELEAPILVPHTAQR ; 135.66 4.40E-07 93277000 20645.4 33932.4 37246.5 27852.6 41196.7 33381.6 34981.8 37741.8 27485 28483.4 TRUE FALSE FALSE 25237.898 37900.49901 51025.53031 29374.11701 37095.0119 35129.40896 27507.65265 28485.56437 33000.98739 21383.01258 1.180277938 1.772458341 2.386264803 1.37371275 1.734788855 1.642865281 1.2864255 1.332158613 1.543327315 1 14.3841775 -6.693880369 4.461915772 1.317004901 1.712505001 0.263953416 0.317863749 0.312375746 12.06346084 0.129708608 0.096713339 2.02E-07 6.693880369 0.3955001 GSVIS(ph)PTELEAPILVPHTAQR ddPTM_HeLa_A486_30min_R1 1 GSVISPTELEAPILVPHTAQR 21 0 Q8N1B4;Q8N1B4-2 Q8N1B4 VPS52 Vacuolar protein sorting-associated protein 52 homolog 1 0 GS(0.223)VIS(0.718)PT(0.058)ELEAPILVPHTAQR 90.084 0.00082293 36126000 12979 16082 15695 7536.4 24674 16171 19399 18223 15347 22416 TRUE FALSE FALSE 12069.23912 14807.60375 21772.52433 17545.12007 21579.15684 14175.98643 14545.16502 14074.02071 16677.29032 16802.8877 0.718283627 0.881253509 1.295760867 1.044172906 1.284252876 0.843663702 0.865634841 0.837595356 0.99252525 1 14.03642157 GSVPLSS(ph)SPPATHFPDETEITNPVPK ddPTM_HeLa_A485_30min_R1 2 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 GSVPLS(0.013)S(0.627)S(0.358)PPAT(0.002)HFPDETEITNPVPK;GS(0.005)VPLS(0.093)S(0.495)S(0.407)PPATHFPDETEITNPVPK ; 254.71 4.52E-62 8534500000 2322250 1991240 1782180 3024220 2583860 1766140 2285260 2155080 2089230 3859660 TRUE FALSE FALSE 2838826.501 2224098.197 2441482.545 3189425.481 2326601.826 1858612.359 1796995.532 1626543.251 2508519.297 2897517.794 0.979744286 0.767587416 0.842611752 1.100744053 0.802963775 0.641449852 0.620184468 0.561357468 0.865747676 1 21.46638609 -5.998176249 24.96768873 0.705120761 0.911623107 0.250638007 0.145123013 72.52291206 992829.7802 0.044478378 0.050090823 1.00E-06 5.998176249 0.206502346 GSVPLSS(ph)SPPATHFPDETEITNPVPK ddPTM_HeLa_A486_30min_R1 2 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 GS(0.009)VPLS(0.106)S(0.476)S(0.408)PPAT(0.001)HFPDETEITNPVPK;GSVPLS(0.065)S(0.467)S(0.467)PPATHFPDETEITNPVPK ; 193.34 7.20E-21 598150000 343920 430640 293360 116093 324330 377990 437190 366950 394530 435480 TRUE FALSE FALSE 319812.984 396514.518 406956.8485 270270.371 283649.5071 331357.4369 327800.4379 283403.4955 428728.1781 326432.9735 0.979720218 1.214688926 1.246678128 0.827950584 0.868936444 1.01508568 1.004189112 0.868182808 1.313372768 1 18.31642727 -5.249982559 24.98903863 0.977064423 1.15379507 0.209868605 0.142909033 1091.108527 2379867.14 0.038462426 0.065862731 5.62E-06 5.249982559 0.176730647 GSVPLSSS(ph)PPATHFPDETEITNPVPK ddPTM_HeLa_A485_30min_R1 2 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 GSVPLS(0.012)S(0.103)S(0.883)PPATHFPDETEITNPVPK;GSVPLS(0.022)S(0.147)S(0.83)PPAT(0.001)HFPDETEITNPVPK ; 229.7 9.54E-39 8466700000 433000 346200 357760 509590 456850 348680 488500 424340 428170 756020 TRUE FALSE FALSE 529319.3562 386685.0785 490110.3116 537427.6113 411364.4099 366936.3456 384127.9843 320269.9497 514099.7916 567558.1275 0.932625806 0.681313613 0.863542055 0.946912017 0.724796968 0.646517648 0.676808182 0.564294535 0.905809937 1 19.11440863 -4.241433151 23.37060759 0.764151763 0.932626198 0.092822481 0.137401504 4453.408583 5202126.537 0.034643555 1.208945411 5.74E-05 4.241433151 0.168474435 GSVPLSSS(ph)PPATHFPDETEITNPVPK ddPTM_HeLa_A486_30min_R1 3 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 GSVPLS(0.006)S(0.114)S(0.879)PPATHFPDETEITNPVPK;GSVPLS(0.007)S(0.354)S(0.639)PPATHFPDETEITNPVPK;GSVPLS(0.001)S(0.026)S(0.973)PPATHFPDETEITNPVPK ;; 281.59 4.17E-76 20863700000 1037990 1382070 937520 303247 1020780 1237400 1365480 1199660 1252560 1268720 TRUE FALSE FALSE 965232.2612 1272549.74 1300552.852 705974.3413 892744.254 1084742.169 1023822.461 926523.6064 1361132.909 951024.254 1.01493969 1.338083371 1.367528584 0.742330533 0.938718703 1.140604106 1.076547162 0.974237621 1.431228387 1 19.85912261 -5.212355912 24.99998424 1.043378659 1.249973796 0.18976478 0.18602417 632.3768704 322091.3127 0.050776909 0.087947919 6.13E-06 5.212355912 0.206595137 GSVPS(ph)PSPRPQALDATQVPS(ph)PLPLAQPST(ph)PPVR ddPTM_HeLa_A485_30min_R1 1 GSVPSPSPRPQALDATQVPSPLPLAQPSTPPVR 33 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 3 0 GS(0.001)VPS(0.919)PS(0.079)PRPQALDAT(0.002)QVPS(0.998)PLPLAQPS(0.224)T(0.776)PPVR 148.17 1.36E-09 72008000 7409.7 8520.9 10816 12430 12330 10541 17334 13718 9554.6 11289 TRUE FALSE FALSE 9057.962202 9517.345133 14817.28849 13109.01943 11102.38191 11092.91046 13630.44929 10353.63899 11472.12058 8474.860059 1.068803749 1.12300912 1.748381494 1.546812494 1.310037196 1.308919603 1.608339158 1.22168849 1.353664898 1 13.04897383 -8.490750012 1.153733151 1.000484734 1.385561579 0.226028052 0.20303439 3.11390169 5.734185972 0.206299838 0.063257513 3.23E-09 8.490750012 0.385076845 GSVSQPSTPS(ph)PPKPTGIFQTSANSSFEPVK ddPTM_HeLa_A485_30min_R1 1 GSVSQPSTPSPPKPTGIFQTSANSSFEPVK 30 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 GSVSQPS(0.102)T(0.37)PS(0.49)PPKPT(0.038)GIFQTSANSSFEPVK 99.969 0.00017435 104700000 86059 59001 47221 129640 87013 73117 132440 115190 70776 164850 TRUE FALSE FALSE 105202.5276 65900.65371 64690.01293 136721.9049 78349.6802 76945.29306 104143.1121 86939.47189 84980.094 123755.9288 0.850080708 0.532505023 0.522722536 1.104770545 0.633098397 0.621750358 0.841520184 0.70250753 0.686674932 1 16.91713812 -10.66884246 2.698145086 1.03584476 0.718993094 0.203512149 0.165067052 68554651.81 59751939.05 16926410.21 0.045423402 2.14E-11 10.66884246 -0.316851666 GSVSSVS(ph)PKPPSSFK ddPTM_HeLa_A486_30min_R1 1 GSVSSVSPKPPSSFK 15 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 GSVS(0.006)S(0.148)VS(0.845)PKPPSSFK 73.688 0.0038581 1068800000 2283800 1975200 999150 1121000 1745900 2431700 2905600 2793000 1490200 3612300 TRUE FALSE FALSE 2123717.414 1818677.958 1386047.638 2609744.652 1526912.942 2131701.578 2178588.148 2157094.871 1619371.736 2707756.568 0.78430884 0.671654897 0.511880445 0.963803277 0.563903329 0.787257467 0.804573119 0.79663545 0.598049232 1 21.36866661 -11.34047037 2.33228378 2.731043748 0.721938419 0.297803819 0.128856437 5613427.509 827932.2277 51323977.74 0.030606965 4.57E-12 11.34047037 -2.009105329 GSWS(ph)SAPTSR ddPTM_HeLa_A485_30min_R1 2 GSWSSAPTSR 10 0 Q9H7P9;Q9H7P9-3;H7BXC7 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 GSWS(0.5)S(0.5)APTSR;GSWS(0.686)S(0.313)APTSR ; 96.015 0.0009397 854660000 588970 927010 885450 662740 1008990 856000 991150 1025770 808700 948680 TRUE FALSE FALSE 719984.3446 1035415.756 1213014.802 698943.8081 908531.4128 900818.8364 779382.7055 774198.2992 970998.6722 712191.5352 1.010942014 1.453844513 1.703214292 0.981398646 1.275684093 1.264854736 1.094344242 1.08706473 1.363395413 1 19.44190576 -5.28241565 24.99877607 1.163423905 1.395784791 0.235616646 0.194758914 1164.892604 1388275.089 0.054721272 0.081257985 5.22E-06 5.28241565 0.232360886 GSWS(ph)SAPTSR ddPTM_HeLa_A486_30min_R1 1 GSWSSAPTSR 10 0 Q9H7P9;Q9H7P9-3;H7BXC7 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 GS(0.001)WS(0.5)S(0.5)APTSR 88.681 0.0018754 0 265590 268900 274470 96306 338420 251710 303580 300220 243170 316810 TRUE FALSE FALSE 246973.5125 247591.3847 380752.1346 224205.235 295972.208 220656.5794 227621.0731 231866.4598 264248.1714 237478.7139 1.039981683 1.042583483 1.60331058 0.944106658 1.246310472 0.929163611 0.958490423 0.976367338 1.112723608 1 17.85743868 -6.2623821 24.99686184 0.991568292 1.178826632 0.213471798 0.172523491 137.836586 3654782.922 0.058829951 0.054831423 5.47E-07 6.2623821 0.18725834 GSYGDLGGPIITTQVTIPK ddPTM_HeLa_A485_30min_R1 2 GSYGDLGGPIITTQVTIPK 19 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 259 1.43E-46 88343000 88809 101287 83845 99243 121492 108837 139706 150872 102039 144063 FALSE FALSE TRUE 108564.2557 113131.6336 114862.7546 104664.3938 109395.8299 114535.537 109856.6718 113870.4054 122517.2913 108150.7454 1.003823462 1.046055052 1.062061608 0.967763962 1.011512491 1.059036039 1.015773598 1.052885998 1.132838159 1 16.72268408 -7.519305124 24.84052116 1.075233406 1.025470261 0.158624521 0.039943886 213.6053822 1484857.223 0.024916668 0.00987727 3.02E-08 7.519305124 -0.049763146 GSYGDLGGPIITTQVTIPK ddPTM_HeLa_A486_30min_R1 1 GSYGDLGGPIITTQVTIPK 19 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 202.4 2.69E-22 32115000 10838 13161 10124 5197 15309 14505 16117 15872 13014 15818 FALSE FALSE TRUE 10078.31217 12118.07443 14044.28393 12098.87864 13388.80247 12715.52058 12084.35613 12258.29208 14142.064 11857.06984 0.849983369 1.022012571 1.184464975 1.020393639 1.129183065 1.072399905 1.019168841 1.033838229 1.192711537 1 13.53345991 -4.322073506 3.589005963 1.080742004 0.836704479 0.53118915 0.065150346 0.17779045 3.950134584 0.015759698 0.103672286 4.76E-05 4.322073506 -0.244037525 GSYGS(ph)DAEEEEYR ddPTM_HeLa_A485_30min_R1 4 GSYGSDAEEEEYR 13 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR ;;; 372.59 3.99E-109 10373100000 3323500 4241120 4020250 3431470 3811520 3411660 3767850 3411550 3782700 4183130 TRUE FALSE FALSE 4062801.109 4737082.091 5507507.772 3618922.517 3432031.686 3590289.242 2962818.067 2574862.013 4541853.193 3140352.676 1.293740394 1.508455444 1.753786386 1.152393661 1.092880972 1.143275808 0.943466665 0.819927658 1.446287619 1 21.58249516 -5.416171538 5.883154047 1.067192463 1.515508191 0.540989366 0.183816202 0.173145806 8.072431461 0.052026431 0.07747637 3.84E-06 5.416171538 0.448315728 GSYGS(ph)DAEEEEYR ddPTM_HeLa_A486_30min_R1 4 GSYGSDAEEEEYR 13 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR ;;; 351.13 1.18E-94 8310250000 2831420 3445760 2999500 810920 3360920 2932440 2852380 2959390 2933940 2985120 TRUE FALSE FALSE 2632952.079 3172705.428 4160986.729 1887862.742 2939362.074 2570665.368 2138684.355 2285601.5 3188256.281 2237626.522 1.176671823 1.41788873 1.859553723 0.843689831 1.313607094 1.148835761 0.955782537 1.021440119 1.424838439 1 21.09353783 -5.272920144 24.99994256 1.10684363 1.478023179 0.383309814 0.222802236 766.0101825 1668024.478 0.062350847 0.093387551 5.33E-06 5.272920144 0.371179549 GSYGS(ph)DAEEEEYRQQLSEHSK ddPTM_HeLa_A485_30min_R1 4 GSYGSDAEEEEYRQQLSEHSK 21 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GSYGS(1)DAEEEEYRQQLSEHSK;GS(0.003)Y(0.002)GS(0.82)DAEEEEY(0.175)RQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GS(0.004)YGS(0.996)DAEEEEYRQQLSEHSK ;;; 311.35 3.30E-102 5257340000 1081440 1388910 1150170 1216180 2234480 1514770 2196890 2534430 1508560 2290020 TRUE FALSE FALSE 1322002.597 1551330.943 1575665.746 1282616.834 2012007.325 1594081.015 1727506.505 1912857.069 1811314.155 1719160.159 0.768981639 0.902377207 0.91653226 0.746071753 1.170343156 0.927244042 1.004854897 1.112669497 1.053604078 1 20.71327252 -5.756224862 24.99999993 1.042545773 0.844342722 0.63307335 0.078621201 89.51441717 429156.9335 0.023310447 0.02918766 1.75E-06 5.756224862 -0.198203052 GSYGS(ph)DAEEEEYRQQLSEHSK ddPTM_HeLa_A486_30min_R1 6 GSYGSDAEEEEYRQQLSEHSK 21 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GS(0.025)YGS(0.975)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GS(0.01)YGS(0.99)DAEEEEYRQQLSEHSK;GSYGS(1)DAEEEEYRQQLSEHSK;GS(0.007)YGS(0.993)DAEEEEYRQQLSEHSK ;;;;; 299.24 1.78E-87 11295920000 2224080 2443270 2182900 919862 3562510 2721440 3888470 3971550 2201910 3328604 TRUE FALSE FALSE 2068183.477 2249656.387 3028177.34 2141485.223 3115666.777 2385696.402 2915533.678 3067314.763 2392773.332 2495099.893 0.828898067 0.901629788 1.213649742 0.858276348 1.248714244 0.956152661 1.168503789 1.229335456 0.958988992 1 21.25066615 -4.602583558 6.591213847 1.083945236 0.846463164 0.316295889 0.12752899 0.200955746 13.07216348 0.030461278 0.082570817 2.50E-05 4.602583558 -0.237482072 GSYGS(ph)DAEEEEYRQQLSEHSKR ddPTM_HeLa_A485_30min_R1 2 GSYGSDAEEEEYRQQLSEHSKR 22 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GSYGS(1)DAEEEEYRQQLSEHSKR;GS(0.006)YGS(0.994)DAEEEEYRQQLSEHSKR ; 220.99 3.00E-36 1642490000 340840 846230 570050 180187 974580 918020 1125250 2062600 562700 393480 TRUE FALSE FALSE 416658.6821 945189.2373 780935.2168 190030.1596 877547.3932 966086.1077 884831.1451 1556744.116 675628.7286 295392.6775 1.410524749 3.199772064 2.643718942 0.643313711 2.970782488 3.270514747 2.99544035 5.270083637 2.287222332 1 18.17227454 -5.977692309 24.90289302 3.220922934 2.071848206 0.123540535 1.188863521 397.7097266 443975.6537 0.35995703 0.408125681 1.05E-06 5.977692309 -1.149074728 GSYVS(ph)IHSSGFR ddPTM_HeLa_A486_30min_R1 1 GSYVSIHSSGFR 12 0 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;Q13838-2;Q13838;Q5STU3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;F6R6M7;A0A0G2JJL7;F6QYI9;K7ENP6;F6SXL5;F6S2B7;K7EN69;K7EIL8;F6U6E2;K7EL56;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 1 0 GS(0.04)YVS(0.96)IHSSGFR 88.561 0.0012146 0 79808 100620 145620 8907.9 150920 72896 95168 88388 116610 39507 TRUE FALSE FALSE 74213.87133 92646.50475 202007.9638 20738.04138 131990.2063 63902.83267 71355.95982 68263.9819 126717.8487 29614.19005 2.506024011 3.128449726 6.821323274 0.700273799 4.456991938 2.157845025 2.40951921 2.305110549 4.278957097 1 14.85400101 -5.285696218 24.99914539 2.593981922 4.049585668 0.196545319 1.538120784 1366.800586 1408624.36 0.420068071 0.623401687 5.18E-06 5.285696218 1.455603746 GSYVSIHSSGFR ddPTM_HeLa_A485_30min_R1 1 GSYVSIHSSGFR 12 0 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;Q13838-2;Q13838;Q5STU3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;F6R6M7;A0A0G2JJL7;F6QYI9;K7ENP6;F6SXL5;F6S2B7;K7EN69;K7EIL8;F6U6E2;K7EL56;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 114.72 0.00081085 38028000 46071 93625 144960 14044 117980 61556 57087 59118 104480 38221 FALSE FALSE TRUE 56319.33501 104573.6293 198586.7363 14811.18816 106233.4969 64778.97698 44889.89609 44619.21781 125448.1777 28693.20811 1.962810669 3.64454295 6.92103635 0.516191431 3.702391749 2.257641486 1.564478114 1.555044582 4.372051295 1 14.80842166 -5.284344051 24.99393873 2.207623177 4.122972481 0.259199995 1.574951957 1102.958387 1203563.032 0.438155001 0.650368958 5.20E-06 5.284344051 1.915349304 GSYVSIHSSGFR ddPTM_HeLa_A486_30min_R1 1 GSYVSIHSSGFR 12 0 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;Q13838-2;Q13838;Q5STU3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;F6R6M7;A0A0G2JJL7;F6QYI9;K7ENP6;F6SXL5;F6S2B7;K7EN69;K7EIL8;F6U6E2;K7EL56;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 95.498 0.0040938 17283000 26167 56923 98052 3027.6 90952 30644 28508 38398 62604 13650 FALSE FALSE TRUE 24332.82843 52412.21417 136020.3603 7048.405806 79543.95207 26863.45485 21374.99687 29655.61362 68030.56513 10231.95115 2.378122028 5.122406605 13.29368742 0.688862339 7.774074648 2.625447917 2.089044069 2.898334167 6.648835995 1 13.32079366 -6.280082027 24.24450448 3.110772515 5.937578728 0.143416149 3.41564301 1166.367444 1516838.946 1.193561563 1.05466654 5.25E-07 6.280082027 2.826806213 GSYVSIHSSGFRDFLLKPELLR ddPTM_HeLa_A485_30min_R1 2 GSYVSIHSSGFRDFLLKPELLR 22 2 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;Q13838-2;Q13838;Q5STU3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;F6R6M7;A0A0G2JJL7;F6QYI9;K7ENP6;F6SXL5;F6S2B7;K7EN69;K7EIL8;F6U6E2;K7EL56;A0A0G2JHN7 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 102.07 3.13E-06 11584900 6151.8 20555.4 11839.9 4463 12332 18102.4 15306.7 43401 6805.6 5212.6 FALSE FALSE TRUE 7520.246687 22959.17522 16219.97171 4706.802389 11104.18278 19050.21367 12036.2985 32756.8367 8171.421495 3913.194751 1.921766527 5.867117965 4.144943644 1.202803001 2.837625901 4.868199741 3.075824043 8.370867996 2.088171434 1 11.9341312 GT(ph)GQSDDSDIWDDTALIK ddPTM_HeLa_A485_30min_R1 1 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 GT(0.331)GQS(0.331)DDS(0.331)DIWDDT(0.006)ALIK 66.965 0.010921 13348000 22529 26847 22402 32532 31632 27806 39081 37906 25923 39730 TRUE FALSE FALSE 27540.49833 29986.52311 30689.43202 34309.14078 28482.60701 29261.87916 30731.02509 28609.49407 31125.50832 29826.04218 0.923370864 1.005380564 1.028947517 1.150308196 0.954957646 0.981084885 1.030342038 0.959211883 1.043568172 1 14.86428493 -4.272275449 3.645308561 1.018553999 0.913859685 0.226095709 0.052492748 0.413194938 10.20525082 0.013659475 0.115953386 5.34E-05 4.272275449 -0.104694314 GT(ph)LSDSEIETNSATSTIFGK ddPTM_HeLa_A485_30min_R1 1 GTLSDSEIETNSATSTIFGK 20 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 GT(0.332)LS(0.332)DS(0.332)EIET(0.004)NS(0.001)ATSTIFGK 58.158 0.028872 72536000 71584 82484 69217 90502 98449 83081 99455 102630 84017 115960 TRUE FALSE FALSE 87507.61384 92129.78628 94823.24866 95445.8951 88647.07188 87430.99269 78205.62678 77459.83158 100878.4413 87053.30609 1.005218731 1.058314617 1.089254997 1.09640747 1.01830793 1.004338567 0.89836481 0.889797701 1.158812293 1 16.40961147 -6.116720692 2.749188633 0.976875177 1.063300587 0.163625999 0.073134317 0.440586637 6.461301865 0.026303505 0.026682183 7.64E-07 6.116720692 0.08642541 GT(ph)PDTDLEVQR ddPTM_HeLa_A485_30min_R1 1 GTPDTDLEVQR 11 0 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 0 GT(0.916)PDT(0.084)DLEVQR 93.623 0.0019859 0 183760 172920 164770 265190 326450 196110 297380 344310 217690 439660 TRUE FALSE FALSE 224636.778 193141.4898 225725.2797 279676.6582 293947.4918 206378.0164 233842.3336 259867.4326 261378.3862 330060.8533 0.680592005 0.585169334 0.683889887 0.84734877 0.890585747 0.625272626 0.708482485 0.787331881 0.791909684 1 18.33237251 -14 0.12206191 1.86538959 0.608467298 0.505344419 0.085422638 144.875667 1.138460173 30.93680067 0.878385238 1.00E-14 14 -1.256922292 GT(ph)PEKANEPVKTETMTVSSLAIR ddPTM_HeLa_A485_30min_R1 2 GTPEKANEPVKTETMTVSSLAIR 23 2 Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 GT(1)PEKANEPVKTETMTVSSLAIR;GT(1)PEKANEPVKTETMTVSSLAIR ; 189.63 4.55E-21 786930000 1450790 1172470 677870 1705820 1114220 1401490 1753560 1712030 1041420 2432910 TRUE FALSE FALSE 1773513.23 1309580.167 928642.3215 1799004.627 1003284.345 1474869.849 1378897.581 1292151.958 1250423.442 1826430.311 0.971027046 0.717016225 0.508446622 0.984983996 0.549314331 0.807514987 0.754968625 0.707474 0.684626965 1 20.80059528 -10.13644024 5.456596399 1.000005088 0.737818741 0.217816855 0.145930414 8.51E-06 1.35E-06 0.133104233 0.032281892 7.30E-11 10.13644024 -0.262186347 GT(ph)PEKANEPVKTETMTVSSLAIR ddPTM_HeLa_A486_30min_R1 2 GTPEKANEPVKTETMTVSSLAIR 23 2 Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 GT(1)PEKANEPVKTETMTVSSLAIR;GT(1)PEKANEPVKTETMTVSSLAIR ; 133.56 1.78E-06 604020000 726330 636710 230174 262363 422550 645290 719660 678360 486650 1067810 TRUE FALSE FALSE 675418.0178 586254.7807 319303.5371 610794.3231 369549.8389 565680.6806 539593.4562 523912.2365 528833.2138 800423.4257 0.8438259 0.732430813 0.398918281 0.763089014 0.461692933 0.706726793 0.674135013 0.654543857 0.660691825 1 19.61040387 -9.654343747 0.747674462 1.034916226 0.645685488 0.400520926 0.126373781 23.27215049 8.347026861 2.304790513 0.04341993 2.22E-10 9.654343747 -0.389230738 GT(ph)PEKEKLPAK ddPTM_HeLa_A485_30min_R1 2 GTPEKEKLPAK 11 2 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 GT(1)PEKEKLPAK;GT(1)PEKEKLPAK ; 65.092 0.019442 263210000 448490 382420 184618 615680 470240 530600 820660 834880 358560 866030 TRUE FALSE FALSE 548255.0532 427140.6924 252915.8808 649313.0394 423421.2545 558381.3955 645319.2868 630124.371 430519.7031 650144.6591 0.843281638 0.656993311 0.389014779 0.99872087 0.651272372 0.85885716 0.992578002 0.96920641 0.662190633 1 19.31040123 -5.896609411 1.208035296 0.899763273 0.663022222 0.222624962 0.172091263 0.686470455 2.113975952 0.074508454 0.094411272 1.27E-06 5.896609411 -0.236741051 GT(ph)PEKEKLPAK ddPTM_HeLa_A486_30min_R1 1 GTPEKEKLPAK 11 2 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 GT(1)PEKEKLPAK 83.499 0.0048182 91609000 403130 312820 94656 181730 260000 370260 478760 447500 205790 687150 TRUE FALSE FALSE 374872.6688 288031.0039 131309.3382 423076.6241 227388.3756 324581.0857 358969.1842 345614.0189 223628.0429 515083.1674 0.727790564 0.559193199 0.25492842 0.821375364 0.441459535 0.630152772 0.696914997 0.670986825 0.434159097 1 18.97444587 -11.0448349 2.625576914 1.548335301 0.581938043 0.385216967 0.1584622 18237261.46 7077639.346 60070195.32 0.038273981 9.02E-12 11.0448349 -0.966397259 GT(ph)PGKGATPAPPGK ddPTM_HeLa_A485_30min_R1 2 GTPGKGATPAPPGK 14 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 GT(1)PGKGATPAPPGK;GT(1)PGKGATPAPPGK ; 102.58 0.00061159 1027100000 1454810 1100980 812540 1806590 1570450 1334270 1767020 1523800 1130670 2363400 TRUE FALSE FALSE 1778427.465 1229730.034 1113132.359 1905279.437 1414090.484 1404130.314 1389481.742 1150085.661 1357585.098 1774247.875 1.002355697 0.693099341 0.627382664 1.073851892 0.797008413 0.791394671 0.783138456 0.648210251 0.765160898 1 20.75877615 -5.988381833 24.99744861 0.776859096 0.83633814 0.016504802 0.146589326 984.3373885 2117869.179 0.045888907 0.051992834 1.03E-06 5.988381833 0.059479044 GT(ph)PGKGATPAPPGK ddPTM_HeLa_A486_30min_R1 1 GTPGKGATPAPPGK 14 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 GT(1)PGKGATPAPPGK 104.76 0.00045008 590030000 1021600 1131200 514580 465340 897150 1154600 1351000 1186000 791080 1393900 TRUE FALSE FALSE 949991.1155 1041559.592 713839.1569 1083335.037 784621.0814 1012157.191 1012965.511 915973.6902 859651.4513 1044858.367 0.909205635 0.99684285 0.683192267 1.036824771 0.750935348 0.968702767 0.969476383 0.876648663 0.822744477 1 19.99487596 GT(ph)PGPPPAHGAALQPHPR ddPTM_HeLa_A485_30min_R1 4 GTPGPPPAHGAALQPHPR 18 0 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 1 0 GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR ;;; 190.31 8.05E-18 2154210000 441238 612450 666400 430289 804660 569850 593160 676910 519280 573600 TRUE FALSE FALSE 539389.8708 684070.6999 912929.0912 453794.5985 724545.2251 599686.4648 466426.5203 510896.7611 623494.7329 430612.0763 1.252612039 1.588600825 2.120073127 1.05383621 1.682593835 1.392637359 1.083171016 1.18644318 1.447926724 1 18.71602925 -6.544563797 5.429511658 1.197473751 1.54744217 0.265154826 0.281732532 0.255457602 22.36005284 0.107312759 0.084762793 2.85E-07 6.544563797 0.349968419 GT(ph)PGPPPAHGAALQPHPR ddPTM_HeLa_A486_30min_R1 4 GTPGPPPAHGAALQPHPR 18 0 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 1 0 GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR ;;; 177.09 8.45E-13 2089090000 661990 743760 826420 245674 937400 643857 764020 738330 589470 614820 TRUE FALSE FALSE 615587.9195 684821.7489 1146431.956 571941.4877 819822.5511 564424.4696 572854.115 570228.3766 640565.7342 460865.0702 1.335722664 1.485948476 2.487565299 1.241017219 1.778877602 1.224706549 1.242997467 1.237300055 1.389920338 1 18.8139849 -6.268923322 24.03886729 1.235316878 1.677884713 0.313215612 0.330151725 447.7052226 1438050.751 0.115123291 0.103617838 5.38E-07 6.268923322 0.442567835 GT(ph)PPPVFTPPLPK ddPTM_HeLa_A485_30min_R1 1 GTPPPVFTPPLPK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 GT(1)PPPVFTPPLPK 95.631 0.0056389 300870000 115060 159670 144620 125290 187060 163120 168090 172880 123200 149020 TRUE FALSE FALSE 140654.7 178342.0176 198120.9561 132134.2754 168435.6496 171660.711 132176.1983 130480.9089 147925.1099 111872.0565 1.257281795 1.594160536 1.770960169 1.181119572 1.505609666 1.534437788 1.181494311 1.166340488 1.322270409 1 16.7714902 -7.336944862 0.534707943 1.025225721 1.51493065 0.404844699 0.175505052 0.832195939 0.54235749 0.179976257 0.110183135 4.60E-08 7.336944862 0.489704929 GT(ph)PPPVFTPPLPK ddPTM_HeLa_A486_30min_R1 1 GTPPPVFTPPLPK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 GT(1)PPPVFTPPLPK 105.66 0.0020391 260650000 140940 161740 128490 35454 180630 137410 146560 140500 140740 134670 TRUE FALSE FALSE 131060.8338 148923.1334 178244.7691 82538.70375 157973.7011 120457.7513 109889.1378 108511.2171 152939.4565 100947.7554 1.298303595 1.475249575 1.765713049 0.81763783 1.564905534 1.193268248 1.088574356 1.074924515 1.515035732 1 16.62324931 -5.247290455 24.96870508 1.195196286 1.509304785 0.294337232 0.235986869 1048.559124 1850396.617 0.062027012 0.106772508 5.66E-06 5.247290455 0.314108499 GT(ph)PPVDPK ddPTM_HeLa_A485_30min_R1 1 GTPPVDPK 8 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 GT(1)PPVDPK 81.972 0.01205 0 793710 803370 657140 1047000 952470 859110 991070 1037000 753830 1337300 TRUE FALSE FALSE 970268.0512 897317.1331 900243.4319 1104194.959 857638.7425 904091.6712 779319.7982 782674.124 905116.7665 1003935.721 0.966464317 0.893799388 0.896714215 1.099866192 0.854276548 0.900547368 0.776264637 0.779605813 0.901568444 1 19.93723547 -5.908083486 24.99321749 0.854609703 0.957200994 0.238817185 0.080830418 24.28211049 6592.886417 0.025015477 0.028364886 1.24E-06 5.908083486 0.102591291 GT(ph)PQDLAR ddPTM_HeLa_A485_30min_R1 2 GTPQDLAR 8 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 GT(1)PQDLAR;GT(1)PQDLAR ; 131.82 0.002569 1876110000 1377950 1912900 1914290 1353340 2211700 1692910 1841790 1908760 1669720 1898290 TRUE FALSE FALSE 1684470.224 2136597.015 2622465.531 1427269.537 1991495.382 1781548.15 1448276.52 1440633.617 2004817.488 1425081.238 1.182016981 1.499280853 1.840221779 1.001535561 1.397460951 1.250137958 1.016276463 1.010913328 1.406809264 1 20.44261273 -5.280582213 24.9995255 1.163507888 1.506384029 0.37379823 0.208824955 866.5992404 1131730.554 0.059335899 0.088164398 5.24E-06 5.280582213 0.342876141 GT(ph)PQDLAR ddPTM_HeLa_A486_30min_R1 2 GTPQDLAR 8 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 GT(1)PQDLAR;GT(1)PQDLAR ; 115.57 0.00472 2413600000 1940620 2348700 2103300 679410 2585800 1942250 2051870 2188800 1739360 1958820 TRUE FALSE FALSE 1804592.559 2162580.458 2917754.088 1581700.815 2261464.852 1702634.942 1538470.424 1690458.021 1890129.125 1468318.722 1.229019648 1.472827681 1.987139471 1.077218993 1.540173001 1.159581307 1.047776889 1.151288202 1.287274416 1 20.48573373 -6.128532704 1.416720265 1.124315365 1.504400722 0.317702961 0.23505342 0.506248557 2.060251037 0.102902539 0.103675781 7.44E-07 6.128532704 0.380085357 GT(ph)PSQS(ph)PVVGR ddPTM_HeLa_A485_30min_R1 4 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 GT(0.995)PS(0.005)QS(1)PVVGR;GT(0.996)PS(0.004)QS(1)PVVGR;GT(0.999)PS(0.078)QS(0.923)PVVGR;GT(1)PS(0.477)QS(0.523)PVVGR ;;; 235.6 3.06E-21 6192800000 3273160 3684600 4272670 3562520 4015220 3035390 3366080 2540280 3490450 4217040 TRUE FALSE FALSE 4001263.15 4115481.918 5853308.434 3757131.447 3615450.599 3194318.327 2646889.51 1917272.347 4190951.299 3165809.537 1.263898887 1.299977737 1.84891364 1.186783792 1.142030358 1.009005213 0.836086151 0.60561835 1.323816626 1 21.59414303 -5.831472718 1.840120068 0.924774082 1.450660278 0.464560683 0.230563658 0.291759831 2.035635209 0.082879805 0.103397352 1.47E-06 5.831472718 0.525886196 GT(ph)PSQS(ph)PVVGR ddPTM_HeLa_A486_30min_R1 4 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 GT(0.999)PS(0.001)QS(1)PVVGR;GT(0.888)PS(0.112)QS(1)PVVGR;GT(0.998)PS(0.016)QS(0.986)PVVGR;GT(0.99)PS(0.075)QS(0.934)PVVGR ;;; 232.35 2.31E-18 9034650000 5327230 6756460 5274960 1485865 5199130 5037060 4940930 4860070 5146280 5479970 TRUE FALSE FALSE 4953818.687 6221053.503 7317565.78 3459168.811 4547006.635 4415638.75 3704657.054 3753538.156 5592363.694 4107749.843 1.205968931 1.514467468 1.78140492 0.842107953 1.106933676 1.074953178 0.901870171 0.913769898 1.361417785 1 21.9699169 -5.268565932 24.99964463 1.025028535 1.501999147 0.571987584 0.187042387 381.9027983 1339698.979 0.052266457 0.07941664 5.39E-06 5.268565932 0.476970611 GT(ph)PSQSPVVGR ddPTM_HeLa_A485_30min_R1 2 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 GT(0.939)PS(0.036)QS(0.025)PVVGR;GT(0.986)PS(0.014)QSPVVGR ; 138.55 5.81E-05 657200000 331210 355090 396210 345890 390710 285829 334090 336080 305440 446330 TRUE FALSE FALSE 404886.5218 396614.6866 542784.5667 364785.0949 351809.5405 300794.5645 262708.9422 253655.853 366739.0063 335068.1451 1.208370679 1.183683655 1.619922916 1.088689272 1.049964151 0.897711611 0.784046308 0.757027658 1.094520657 1 18.35409501 -5.729934132 2.144774339 0.891914313 1.320788108 0.583613556 0.151347604 0.211459972 1.997676861 0.051165594 0.06736261 1.86E-06 5.729934132 0.428873796 GT(ph)PSQSPVVGR ddPTM_HeLa_A486_30min_R1 3 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 GT(0.994)PS(0.005)QSPVVGR;GT(0.998)PS(0.002)QSPVVGR;GT(0.996)PS(0.004)QSPVVGR ;; 139.48 4.11E-05 1137840000 391603 428333 374202 135616 399872 338551 394133 358683 349094 420520 TRUE FALSE FALSE 364153.6519 394390.3331 519103.0359 315720.9017 349716.3251 296784.0198 295516.7547 277018.7109 379353.749 315219.0549 1.155239971 1.25116273 1.64680094 1.001592057 1.109439038 0.941516749 0.937496481 0.878813341 1.203460714 1 18.26599522 -5.314665441 24.02238928 1.003508923 1.341077408 0.535370111 0.145277202 155.700445 70271.47282 0.041049508 0.060886343 4.85E-06 5.314665441 0.337568485 GT(ph)SAEQDNRFSNK ddPTM_HeLa_A485_30min_R1 1 GTSAEQDNRFSNK 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R1E7;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 GT(0.5)S(0.5)AEQDNRFSNK 58.159 0.013647 0 101650 162970 112310 83422 214980 214730 281050 453690 145080 122620 TRUE FALSE FALSE 124261.6918 182027.9238 153858.1426 87979.13262 193575.8364 225972.9308 221001.3715 342421.8161 174196.2252 92053.09065 1.349891578 1.977423273 1.671406593 0.955743387 2.102871669 2.454810905 2.400803384 3.719829652 1.892345211 1 16.49017854 -5.973224742 7.261294877 2.450518283 1.532857266 0.224211816 0.679208821 0.233371121 45.44224239 0.2070584 0.232380967 1.06E-06 5.973224742 -0.917661017 GT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_HeLa_A485_30min_R1 1 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK 196.3 9.41E-21 695760000 744540 620730 462350 1140500 613380 571780 882240 649030 529230 1394100 TRUE FALSE FALSE 910160.3544 693318.9739 633392.505 1202802.627 552309.7335 601717.5167 693742.2168 489854.3749 635441.6066 1046576.527 0.869654852 0.662463715 0.605204196 1.149273461 0.527729907 0.574938862 0.662868122 0.468054043 0.607162105 1 19.99724638 -4.257755718 21.90716177 0.680035984 0.869655293 0.057610341 0.203286399 191.0699264 1136001.114 0.050384378 0.351808518 5.52E-05 4.257755718 0.18961931 GT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_HeLa_A486_30min_R1 2 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.54)S(0.46)PRPPEGGLGYSQLGDDDLK;GT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK ; 123.65 3.45E-06 1068520000 671210 736850 376000 259880 538870 748960 806710 713940 565160 1017870 TRUE FALSE FALSE 624161.6451 678459.3224 521597.2696 605013.7736 471279.8998 656560.9301 604862.6255 551391.4472 614148.5238 762988.7268 0.818048319 0.889212774 0.683623822 0.792952441 0.617676098 0.860511967 0.792754341 0.722673125 0.804924768 1 19.54130222 -8.036081349 21.3311081 1.000000002 0.771771486 0.440647432 0.076566204 738.9253294 436849.6706 0.073395101 0.018950522 9.20E-09 8.036081349 -0.228228516 GTDDS(ph)PKDSQEDLQER ddPTM_HeLa_A486_30min_R1 2 GTDDSPKDSQEDLQER 16 1 Q969E4;Q5H9L2;Q6IPX3-2;Q6IPX3 Q969E4 TCEAL3;TCEAL5;TCEAL6 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5;Transcription elongation factor A protein-like 6 1 0 GTDDS(1)PKDSQEDLQER;GTDDS(0.998)PKDS(0.002)QEDLQER ; 213.7 6.08E-25 836810000 229350 245760 112247 207894 240080 286690 363010 332130 195481 453300 TRUE FALSE FALSE 213273.7494 226285.0826 155712.0445 483987.7384 209966.9277 251321.1027 272181.0585 256511.2493 212425.4505 339790.7295 0.62766206 0.665954256 0.45825866 1.42437005 0.617930124 0.73963496 0.801025557 0.754909499 0.625165527 1 18.37428697 -13.9999998 0.026680399 1.997108522 2.29E-07 0.065791352 0.247473348 6789.315513 13.63425436 758.9010771 339.1988594 1.00E-14 13.9999998 -1.997108293 GTDDSPKDS(ph)QEDLQER ddPTM_HeLa_A486_30min_R1 1 GTDDSPKDSQEDLQER 16 1 Q969E4;Q5H9L2;Q6IPX3-2;Q6IPX3 Q969E4 TCEAL3;TCEAL5;TCEAL6 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5;Transcription elongation factor A protein-like 6 1 0 GTDDS(0.001)PKDS(0.999)QEDLQER 177.87 1.23E-13 629410000 931810 871420 405500 440640 663810 937740 1121000 955390 670190 1515300 TRUE FALSE FALSE 866494.9309 802365.5055 562520.4597 1025832.189 580548.76 822051.173 840513.9433 737868.553 728282.6088 1135859.017 0.762854296 0.70639533 0.495237922 0.903133376 0.511109875 0.723726414 0.73998087 0.649612797 0.641173418 1 20.11535235 -10.46739725 3.272946068 1.005770201 0.680260867 0.416435131 0.113112888 111669710.4 142097719.3 5866300.768 0.027320518 3.41E-11 10.46739725 -0.325509334 GTDTQTPAVLS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 GTDTQTPAVLSPSK 14 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GTDTQTPAVLS(1)PSK;GTDTQTPAVLS(0.974)PS(0.026)K;GTDTQTPAVLS(0.999)PS(0.001)K;GTDTQTPAVLS(0.991)PS(0.009)K ;;; 300.03 3.64E-58 3544280000 3777060 2542110 2509350 6239450 3805070 2463640 3947330 2476640 3184210 8654000 TRUE FALSE FALSE 4617253.966 2839387.651 3437662.988 6580295.354 3426223.87 2592632.381 3103950.699 1869240.157 3823251.74 6496717.065 0.710705718 0.437049609 0.529138479 1.012864696 0.527377726 0.399068076 0.477772184 0.287720727 0.588489802 1 22.63127945 -10.61850285 2.58492634 1.046817245 0.546516245 0.338336247 0.187694933 17218990.56 15163773.13 5421799.687 0.051407644 2.41E-11 10.61850285 -0.500301001 GTDTQTPAVLS(ph)PSK ddPTM_HeLa_A486_30min_R1 5 GTDTQTPAVLSPSK 14 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GTDTQTPAVLS(0.985)PS(0.015)K;GTDTQTPAVLS(0.999)PS(0.001)K;GTDTQTPAVLS(0.992)PS(0.008)K;GTDTQTPAVLS(0.972)PS(0.028)K;GTDTQTPAVLS(1)PSK ;;;; 264.85 5.92E-42 4357590000 4629580 5668030 3209760 2147590 4516830 6086480 6809580 5577940 4868630 7446830 TRUE FALSE FALSE 4305070.349 5218874.66 4452665.032 4999698.053 3950287.064 5335591.98 5105751.06 4307964.828 5290646.768 5582095.297 0.771228386 0.934931129 0.797669118 0.895666911 0.707671018 0.95584036 0.914665692 0.771746915 0.947788686 1 22.41237532 GTDTQTPAVLS(ph)PSKTQATLKPK ddPTM_HeLa_A485_30min_R1 2 GTDTQTPAVLSPSKTQATLKPK 22 2 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GTDTQTPAVLS(0.999)PS(0.001)KTQATLKPK;GTDTQTPAVLS(0.986)PS(0.014)KTQATLKPK ; 157.31 2.39E-10 2563630000 676288 466075 328750 1051050 833524 820970 1388910 1207850 631133 1795570 TRUE FALSE FALSE 826725.9324 520578.4169 450368.3054 1108466.2 750535.4239 863954.7197 1092158.032 911622.8937 757795.604 1347967.444 0.613312982 0.386195096 0.334109186 0.822324163 0.556790468 0.640931444 0.810225823 0.676294444 0.562176488 1 20.36235422 -13.99999583 0.061384432 2.453232631 8.72E-11 0.471173981 0.138896996 344.6856614 1.539395354 74.6470658 11.92585606 1.00E-14 13.99999583 -2.453232631 GTDTQTPAVLS(ph)PSKTQATLKPK ddPTM_HeLa_A486_30min_R1 1 GTDTQTPAVLSPSKTQATLKPK 22 2 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GTDTQTPAVLS(0.999)PS(0.001)KTQATLKPK 167.67 2.91E-14 1788200000 884930 770130 312490 510490 847950 898100 1235200 1184000 497030 1330700 TRUE FALSE FALSE 822900.9768 709102.094 433494.4968 1188446.519 741592.2042 787301.5532 926139.8954 914429.0465 540112.9606 997484.0586 0.824976569 0.710890653 0.434587894 1.191444122 0.743462713 0.789287354 0.928475886 0.916735499 0.541475281 1 19.92793426 -5.242212854 24.96744589 0.862941874 0.662225659 0.223787509 0.183739853 1329.195274 1726082.487 0.048735114 0.084243277 5.73E-06 5.242212854 -0.200716215 GTEAPAVVT(ph)EEEDDDEETAPPVIAPRPDHTK ddPTM_HeLa_A485_30min_R1 3 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK 31 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK ;; 244.05 1.74E-50 4470700000 2609460 3075060 2803840 3045110 3776840 3463650 4288390 4631660 2846650 4130150 TRUE FALSE FALSE 3189925.374 3434661.518 3841097.094 3211456.649 3400804.548 3645001.358 3372140.444 3495738.123 3417946.544 3100579.615 1.028815825 1.10774821 1.238831951 1.035760099 1.096828648 1.175587087 1.087583892 1.127446657 1.102357291 1 21.5641065 -8.064951339 14.18474939 0.999999998 1.114623811 0.24750527 0.058297687 84.27489651 18406.70528 0.055568132 0.014348168 8.61E-09 8.064951339 0.114623813 GTEAPAVVT(ph)EEEDDDEETAPPVIAPRPDHTK ddPTM_HeLa_A486_30min_R1 4 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK 31 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 GT(0.002)EAPAVVT(0.998)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK ;;; 214.76 2.82E-30 3444870000 1555835 1643174 1382954 645522 1929853 1677981 2033227 2008961 1338233 1919074 TRUE FALSE FALSE 1446779.001 1512962.908 1918470.826 1502807.839 1687792.842 1470968.765 1524492.099 1551564.436 1454232.114 1438525.379 1.005737557 1.051745718 1.333637107 1.044686358 1.17327985 1.022553224 1.059760308 1.078579814 1.010918636 1 20.45615924 -6.27450432 24.27075758 1.040861 1.125407165 0.197455643 0.087518806 968.4109349 1799012.027 0.031134373 0.027637023 5.31E-07 6.27450432 0.084546166 GTENTFPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 GTENTFPSPK 10 0 J3QSD2;J3QRZ1;A6NIZ0;Q9GZM8-3;Q9GZM8;Q9GZM8-2 J3QSD2 NDEL1 Nuclear distribution protein nudE-like 1 1 0 GTENT(0.007)FPS(0.993)PK 80.69 0.0041549 0 268500 312580 252070 397260 458250 341800 500940 490770 241410 581780 TRUE FALSE FALSE 328226.8987 349133.5119 345321.1825 418961.3079 412625.021 359696.1195 393910.0767 370407.888 289858.7727 436752.9529 0.751516152 0.799384434 0.790655633 0.959263824 0.94475611 0.823568832 0.901905927 0.848094754 0.663667574 1 18.73645793 -5.039892144 22.5851806 0.872769918 0.780342648 0.201879397 0.088117289 278.5072633 157678.5469 0.024158973 0.041860482 9.12E-06 5.039892144 -0.09242727 GTEPS(ph)PGGT(ph)PQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A485_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 3 0 GTEPS(1)PGGT(0.96)PQPS(0.041)RPVS(1)PAGPPEGVPEEAQPPR 185.13 4.99E-21 483140000 198180 260550 280350 219490 349970 309460 325670 382970 312550 363130 TRUE FALSE FALSE 242264.4573 291019.056 384063.1313 231480.1829 315125.758 325662.8471 256087.944 289046.007 375275.9181 272608.3739 0.888690446 1.067535277 1.408845685 0.84913086 1.15596507 1.194617914 0.939398671 1.060297609 1.376611851 1 18.05647035 -4.308080874 4.585588023 1.119432074 0.88207777 0.147271713 0.167660294 0.332845022 14.93664236 0.040727218 0.215806108 4.92E-05 4.308080874 -0.237354304 GTEPS(ph)PGGT(ph)PQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A486_30min_R1 3 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 3 0 GT(0.003)EPS(0.997)PGGT(0.986)PQPS(0.027)RPVS(0.988)PAGPPEGVPEEAQPPR;GT(0.001)EPS(0.999)PGGT(0.998)PQPS(0.073)RPVS(0.929)PAGPPEGVPEEAQPPR;GT(0.143)EPS(0.857)PGGT(0.999)PQPS(0.001)RPVS(1)PAGPPEGVPEEAQPPR ;; 170.49 1.30E-14 1054520000 375082 498200 462890 174818 591770 516770 545560 551080 481090 503440 TRUE FALSE FALSE 348790.6887 458720.8176 642133.4046 406985.1388 517544.6886 453016.1715 409055.1177 425611.114 522791.2686 377375.3472 0.924254039 1.215555868 1.701577513 1.078462443 1.371432163 1.200439231 1.083947642 1.127819072 1.385334979 1 18.52564065 -6.513423981 23.37411512 1.157393632 1.272065674 0.054399029 0.209523651 633.2986068 1565660.215 0.077807054 0.063866804 3.07E-07 6.513423981 0.114672042 GTEPS(ph)PGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A485_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 0 GTEPS(1)PGGTPQPS(0.039)RPVS(0.961)PAGPPEGVPEEAQPPR 182.23 8.29E-21 267190000 32989 54887 55373 42891 55138 44007 42387 49086 45495 44128 TRUE FALSE FALSE 40327.28924 61305.5572 75857.77696 45234.02672 49648.26712 46311.13847 33330.67118 37047.58154 54625.4292 33127.70172 1.217328313 1.850582866 2.289859333 1.365444156 1.498693376 1.397958086 1.00612688 1.118326344 1.648935071 1 15.0157505 -5.840498665 1.62191059 1.228768069 1.77054322 0.324198999 0.3162744 0.43546326 2.370907737 0.120372768 0.151806514 1.44E-06 5.840498665 0.541775151 GTEPS(ph)PGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A486_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 0 GTEPS(1)PGGTPQPS(0.004)RPVS(0.996)PAGPPEGVPEEAQPPR 236.08 1.90E-50 2116300000 272960 349110 330060 116120 373650 262000 324520 342430 280140 341130 TRUE FALSE FALSE 253826.9136 321445.2522 457868.0713 270333.2284 326783.3329 229677.1038 243321.6636 264466.1642 304422.7608 255708.8276 0.992640402 1.257075304 1.790583749 1.057191615 1.277950925 0.89819779 0.951557542 1.034247299 1.190505481 1 17.96414244 -5.90558846 2.027097331 1.019317028 1.323808576 0.249995797 0.214179063 0.44388097 3.72307006 0.078112388 0.091463996 1.24E-06 5.90558846 0.304491548 GTEPSPGGT(ph)PQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A485_30min_R1 2 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 0 GTEPS(0.106)PGGT(0.894)PQPS(0.001)RPVS(1)PAGPPEGVPEEAQPPR;GTEPS(0.125)PGGT(0.874)PQPS(0.002)RPVS(0.999)PAGPPEGVPEEAQPPR ; 199.99 3.92E-29 4624000000 281340 459170 491010 349730 562300 433630 511180 558460 472440 457270 TRUE FALSE FALSE 343923.1124 512865.9373 672655.0316 368834.8643 506315.4376 456334.1963 401962.217 421496.8094 567254.3745 343281.0044 1.001870502 1.494011992 1.959488066 1.074440064 1.474929959 1.329331336 1.170942207 1.227847751 1.652449064 1 18.3890305 GTEPSPGGT(ph)PQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A486_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 0 GTEPS(0.043)PGGT(0.957)PQPS(0.005)RPVS(0.995)PAGPPEGVPEEAQPPR 221.19 4.13E-39 2126800000 127190 141380 164700 48485 192950 128830 155980 155160 141440 162930 TRUE FALSE FALSE 118274.6378 130176.5339 228476.2508 112875.5303 168748.4118 112936.2644 116952.1542 119833.4551 153700.1331 122131.2675 0.968422258 1.065873929 1.870743303 0.924214844 1.381697048 0.924712129 0.957593879 0.981185716 1.258483075 1 16.89807307 -6.267186635 24.93979368 1.019044 1.249649235 0.145536489 0.263394311 918.868248 3987349.169 0.091671085 0.082975723 5.41E-07 6.267186635 0.230605235 GTEPSPGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A485_30min_R1 4 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPS(0.011)RPVS(0.989)PAGPPEGVPEEAQPPR ;;; 312.8 1.01E-109 4450520000 211727 287704 269069 160347 280403 227961 219701 241330 243977 241386 TRUE FALSE FALSE 258824.9407 321348.4801 368608.82 169106.3506 252485.0928 239896.6855 172760.0866 182143.4391 292940.946 181212.9126 1.42829193 1.773319989 2.034120057 0.933191505 1.3933063 1.323838804 0.953354174 1.00513499 1.616556689 1 17.46732623 -5.263768534 24.99987812 1.181324234 1.748051593 0.5252401 0.248365757 161.1437999 1729635.752 0.06898577 0.108042898 5.45E-06 5.263768534 0.566727359 GTEPSPGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_A486_30min_R1 4 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GTEPSPGGT(0.006)PQPS(0.141)RPVS(0.853)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPS(0.001)RPVS(0.999)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPS(0.003)RPVS(0.997)PAGPPEGVPEEAQPPR;GTEPSPGGTPQPSRPVS(1)PAGPPEGVPEEAQPPR ;;; 300.58 2.68E-93 3756440000 364661 358406 255143 88605.9 370345 278292 300522 265831 246844 289630 TRUE FALSE FALSE 339100.147 330004.6033 353941.2026 206279.0131 323892.8768 243959.1625 225328.217 205307.0843 268240.6367 217104.7628 1.561919428 1.520024706 1.630278387 0.950135826 1.491873658 1.123693278 1.037877816 0.945659053 1.235535477 1 17.72803185 -5.325075242 0.62853558 1.041823026 1.678807994 0.556170067 0.173663981 0.919304928 0.623773694 0.103071244 0.359437195 4.73E-06 5.325075242 0.636984968 GTFS(ph)DQELDAQS(ph)LDDEDDNMHHAVYPAVNR ddPTM_HeLa_A486_30min_R1 1 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 2 0 GT(0.124)FS(0.876)DQELDAQS(1)LDDEDDNMHHAVYPAVNR 123.9 2.06E-06 75276000 18486 24747 17656 5238.1 28939 20396 19198 27112 17881 22281 TRUE FALSE FALSE 17190.22686 22785.95759 24492.87604 12194.56152 25309.20077 17879.74889 14394.45734 20939.18945 19430.93948 16701.69258 1.029250586 1.364290325 1.466490653 0.730139264 1.515367419 1.070535146 0.861856203 1.253716613 1.163411396 1 14.02770669 GTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_HeLa_A485_30min_R1 2 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 GT(0.016)FS(0.984)DQELDAQSLDDEDDNMHHAVYPAVNR;GT(0.038)FS(0.962)DQELDAQSLDDEDDNMHHAVYPAVNR ; 217.96 9.46E-39 323310000 22929.3 21834.8 25828.4 23627.5 39183.2 26478.4 30992 34872.5 29628.6 28192.5 TRUE FALSE FALSE 28029.84368 24388.18992 35383.39997 24918.2105 35281.98303 27864.76808 24370.30602 26319.9647 35574.78825 21164.62859 1.324372103 1.152308901 1.671817666 1.177351655 1.667025853 1.316572505 1.151463911 1.24358264 1.680860502 1 14.36936755 -6.508060702 24.64856768 1.281381423 1.398185243 0.066969171 0.22779099 1914.957145 3185381.003 0.079768361 0.067875319 3.10E-07 6.508060702 0.11680382 GTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_HeLa_A486_30min_R1 1 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 GT(0.022)FS(0.978)DQELDAQSLDDEDDNMHHAVYPAVNR 214.12 5.16E-30 182240000 3437.9 6165.9 3604.8 0 5281.1 5659.3 4505.6 5228.4 7067.3 4812.2 TRUE FALSE FALSE 3196.920963 5677.291628 5000.6751 0 4618.695194 4961.113106 3378.251225 4038.007455 7679.899254 3607.193798 0.886262603 1.573880403 1.386306193 0 1.280412269 1.375338666 0.936531668 1.119431803 2.129050915 1 11.81666122 -7.562184258 24.99124461 1.584432246 1.071003146 0.144588205 0.482307347 297.8531219 189376.1334 0.323145112 0.122137724 2.74E-08 7.562184258 -0.5134291 GTFSDQELDAQSLDDEDDNMHHAVYPAVNRFS(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 1 GTFSDQELDAQSLDDEDDNMHHAVYPAVNRFSPSPR 36 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 2 0 GTFSDQELDAQS(0.068)LDDEDDNMHHAVY(0.238)PAVNRFS(0.913)PS(0.782)PR 80.484 0.00095238 307960000 14786 17704 18609 7215.8 16335 14989 18176 15492 20167 12966 TRUE FALSE FALSE 13749.57775 16301.07056 25814.90317 16798.74707 14286.11198 13139.80958 13628.17255 11964.80979 21915.0918 9719.229206 1.414677796 1.677197874 2.656064861 1.728403221 1.469881169 1.35193947 1.402186559 1.231045131 2.254817881 1 13.24662619 -5.613086685 4.694322247 1.458618779 1.935294633 0.197441258 0.421253173 0.338566153 13.07908836 0.126732115 0.165913808 2.44E-06 5.613086685 0.476675854 GTGASGSFK ddPTM_HeLa_A485_30min_R1 1 GTGASGSFK 9 0 P16402;Q02539;P22492;P10412;P16401;P16403 P16402;P10412;P16401;P16403 HIST1H1D;HIST1H1A;HIST1H1T;HIST1H1E;HIST1H1B;HIST1H1C Histone H1.3;Histone H1.1;Histone H1t;Histone H1.4;Histone H1.5;Histone H1.2 0 0 138.98 0.00072112 47224000 20039 30306 29955 26058 38928 33493 37320 69466 38183 65281 FALSE FALSE TRUE 24496.60642 33850.02307 41036.60103 27481.48256 35052.19164 35246.64169 29346.27712 52429.35458 45845.97786 49007.64811 0.499852724 0.690708989 0.837350957 0.560759057 0.715239212 0.719206962 0.59881015 1.069819847 0.935486187 1 15.58071929 -7.261665595 24.99997172 1.001989777 0.668809585 0.735845525 0.09366444 10.41032108 1150311.043 0.04686416 0.02472523 5.47E-08 7.261665595 -0.333180192 GTGDS(ph)LRESK ddPTM_HeLa_A485_30min_R1 1 GTGDSLRESK 10 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 GT(0.003)GDS(0.997)LRESK 92.856 0.0013639 237880000 149350 169020 181330 189260 291840 214300 316890 336050 180520 283740 TRUE FALSE FALSE 182572.3922 188785.4187 248411.5128 199598.7946 262783.3849 225520.4166 249183.8627 253633.2106 216748.7082 213008.8398 0.85711181 0.886279738 1.166202834 0.937044654 1.233673612 1.058737359 1.16982874 1.19071683 1.017557339 1 17.70055378 -4.74826894 22.66117475 1.103974454 0.871695049 0.498223842 0.09009507 55.51295809 95510.16341 0.021729764 0.056525726 1.79E-05 4.74826894 -0.232279405 GTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_HeLa_A485_30min_R1 5 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 GTGQS(1)DDS(1)DIWDDTALIK;GT(0.097)GQS(0.904)DDS(0.999)DIWDDTALIK;GTGQS(1)DDS(1)DIWDDTALIK;GT(0.079)GQS(0.921)DDS(1)DIWDDTALIK;GT(0.073)GQS(0.927)DDS(1)DIWDDTALIK ;;;; 291.74 3.32E-78 345196000 632228 627661 582357 824857 868849 743692 1002000 1008966 674895 1104443 TRUE FALSE FALSE 772864.9374 701060.494 797795.0882 869916.8493 782343.3428 782630.5632 787914.5144 761515.5065 810340.236 829125.6859 0.932144487 0.845541883 0.962212487 1.049197804 0.943576295 0.943922709 0.950295628 0.918456055 0.977343061 1 19.66123129 -4.821785235 10.49323394 0.965809811 0.888939483 0.392936952 0.039336381 0.422391895 71.14031854 0.010523285 0.02196999 1.51E-05 4.821785235 -0.076870328 GTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_HeLa_A486_30min_R1 10 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 GTGQS(1)DDS(1)DIWDDTALIK;GTGQS(1)DDS(1)DIWDDTALIK;GT(0.02)GQS(0.98)DDS(1)DIWDDTALIK;GT(0.022)GQS(0.978)DDS(1)DIWDDTALIK;GT(0.086)GQS(0.914)DDS(1)DIWDDTALIK;GT(0.017)GQS(0.983)DDS(1)DIWDDTALIK;GT(0.086)GQS(0.914)DDS(1)DIWDDTALIK;GT(0.077)GQS(0.923)DDS(1)DIWDDTALIK;GT(0.1)GQS(0.904)DDS(0.997)DIWDDTALIK;GT(0.098)GQS(0.902)DDS(1)DIWDDTALIK ;;;;;;;;; 333.75 2.75E-101 419704000 1158928 1344594 927970 606473 1370345 1378803 1565490 1545839 1048119 1537784 TRUE FALSE FALSE 1077693.132 1238043.475 1287304.836 1411899.793 1198463.552 1208700.305 1173787.844 1193885.205 1138970.799 1152712.877 0.934918967 1.074025891 1.116761044 1.224849502 1.039689567 1.048570141 1.018282928 1.035717765 0.98807849 1 20.13660177 -5.979431774 24.99997108 1.023011526 1.094187006 0.186383503 0.067780493 422.988819 514125.4811 0.022184798 0.025152692 1.05E-06 5.979431774 0.07117548 GTGQS(ph)DDSDIWDDTALIK ddPTM_HeLa_A485_30min_R1 5 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 GT(0.234)GQS(0.766)DDSDIWDDTALIK;GT(0.009)GQS(0.971)DDS(0.02)DIWDDTALIK;GT(0.005)GQS(0.995)DDSDIWDDTALIK;GT(0.04)GQS(0.96)DDSDIWDDTALIK;GT(0.004)GQS(0.996)DDSDIWDDTALIK ;;;; 281.53 2.60E-69 1397216000 949584 1022718 995623 1289443 1365485 1121772 1462022 1559550 1156235 1705832 TRUE FALSE FALSE 1160815.685 1142315.974 1363945.379 1359882.006 1229532.519 1180506.247 1149649.056 1177067.917 1388280.759 1280599.476 0.90646272 0.892016587 1.065083506 1.061910481 0.960122616 0.921838771 0.897742876 0.919153833 1.084086621 1 20.28838789 -7.73695141 0.005278794 1.902214079 0.04982615 0.042291889 0.070392352 24020.28962 109.4467414 19270.93431 19126.8212 1.83E-08 7.73695141 -1.852387929 GTGQS(ph)DDSDIWDDTALIK ddPTM_HeLa_A486_30min_R1 2 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 GT(0.006)GQS(0.707)DDS(0.287)DIWDDTALIK;GT(0.107)GQS(0.893)DDSDIWDDTALIK ; 184.8 7.73E-18 275420000 257112 282794 192169 113049 294480 278004 314854 316760 227019 326512 TRUE FALSE FALSE 239089.7765 260384.3735 266581.9833 263183.7852 257543.5725 243706.693 236074.199 244640.6628 246697.1897 244751.27 0.97686838 1.063873432 1.089195506 1.075311214 1.052266542 0.995732088 0.964547392 0.999548083 1.007950601 1 17.90095682 -6.263677662 5.236914915 0.9913423 1.055914303 0.481564269 0.029893701 0.152811245 14.26823317 0.010830796 0.010118046 5.45E-07 6.263677662 0.064572003 GTHDRDPS(ph)EKPPR ddPTM_HeLa_A486_30min_R1 1 GTHDRDPSEKPPR 13 2 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 0 GTHDRDPS(1)EKPPR 119.96 4.52E-05 536580000 186100 167880 96326 82389 149750 172520 212950 217030 140010 254530 TRUE FALSE FALSE 173055.351 154576.5774 133626.0069 191805.7557 130966.9586 151236.2365 159667.6576 167617.0067 152146.1795 190794.0313 0.907027069 0.810175121 0.700367857 1.005302705 0.68643111 0.792667545 0.836858766 0.878523325 0.797436788 1 17.54165651 -10.31032466 3.283885084 1.000961213 0.822196979 0.260925036 0.088890811 95305080.06 131277737.8 897753.8207 0.020893304 4.89E-11 10.31032466 -0.178764234 GTHHSQNPS(ph)PGSSSPRPSVVGR ddPTM_HeLa_A486_30min_R1 2 GTHHSQNPSPGSSSPRPSVVGR 22 1 J3KTD2;J3KT00;A0A1W2PQI7;A0A1W2PPP3;Q86VV8-2;Q86VV8-4;Q86VV8-3;Q86VV8 J3KTD2 RTTN Rotatin 1 0 GTHHSQNPS(0.468)PGS(0.176)S(0.176)S(0.176)PRPS(0.003)VVGR;GTHHSQNPS(0.249)PGS(0.249)S(0.249)S(0.249)PRPS(0.002)VVGR ; 81.888 0.0019687 82492000 53448 77766 124632 2991 110225 30117 33246 34487 68517 14485.5 TRUE FALSE FALSE 49701.57121 71603.53894 172892.8482 6963.199157 96399.55269 26401.47075 24927.49916 26635.06295 74456.10873 10858.23652 4.577315215 6.594398532 15.92273735 0.641282693 8.878011872 2.431469485 2.295722618 2.452982389 6.85710876 1 13.40650219 -5.871081443 1.374674742 3.17512781 8.141134964 0.209648864 3.932213321 0.656250147 2.588404835 1.560883407 1.972937062 1.35E-06 5.871081443 4.966007154 GTHHSQNPSPGS(ph)SSPRPSVVGR ddPTM_HeLa_A485_30min_R1 4 GTHHSQNPSPGSSSPRPSVVGR 22 1 J3KTD2;J3KT00;A0A1W2PQI7;A0A1W2PPP3;Q86VV8-2;Q86VV8-4;Q86VV8-3;Q86VV8 J3KTD2 RTTN Rotatin 1 0 GTHHSQNPS(0.002)PGS(0.382)S(0.382)S(0.234)PRPSVVGR;GTHHSQNPS(0.1)PGS(0.3)S(0.3)S(0.3)PRPSVVGR;GTHHSQNPS(0.005)PGS(0.331)S(0.331)S(0.331)PRPS(0.001)VVGR;GTHHSQNPS(0.011)PGS(0.329)S(0.329)S(0.329)PRPS(0.002)VVGR ;;; 203.47 4.16E-27 548119000 106427 373818 453573 38843.2 339561 223417 212360 258882 267396 85773 TRUE FALSE FALSE 130101.319 417532.7633 621368.5274 40965.10566 305753.1146 235114.7687 166987.5512 195390.7836 321059.9245 64391.36964 2.020477584 6.484296975 9.649872816 0.636189382 4.748355506 3.651339768 2.593321933 3.034425028 4.986070747 1 15.97457972 -5.274520611 24.96637888 3.124023042 6.094824252 0.299392228 2.162511839 952.2059539 1817344.764 0.6034617 0.90121148 5.31E-06 5.274520611 2.97080121 GTHHSQNPSPGSS(ph)SPRPSVVGR ddPTM_HeLa_A486_30min_R1 2 GTHHSQNPSPGSSSPRPSVVGR 22 1 J3KTD2;J3KT00;A0A1W2PQI7;A0A1W2PPP3;Q86VV8-2;Q86VV8-4;Q86VV8-3;Q86VV8 J3KTD2 RTTN Rotatin 1 0 GTHHSQNPS(0.011)PGS(0.263)S(0.363)S(0.363)PRPS(0.001)VVGR;GTHHSQNPS(0.031)PGS(0.133)S(0.418)S(0.418)PRPSVVGR ; 183.91 9.74E-20 279380000 120849 165857 230330 6339.4 222998 70679 77070 98019 154840 26661 TRUE FALSE FALSE 112378.1092 152713.8873 319519.9445 14758.44358 195027.5115 61959.34359 57786.27084 75702.21344 168261.6559 19984.91207 5.623147542 7.641459055 15.98805856 0.738479285 9.758737533 3.10030604 2.891494876 3.787968303 8.419434387 1 14.2866236 -5.28217597 24.98137491 4.484490611 9.539947348 0.318895369 3.673394122 986.4957571 1188429.378 1.016062146 1.508878544 5.22E-06 5.28217597 5.055456738 GTILVGGGALATVLGLSQFAHYR ddPTM_HeLa_A485_30min_R1 1 GTILVGGGALATVLGLSQFAHYR 23 0 F5GYK7;P43304;E9PDK4;E7EM56 F5GYK7 GPD2 "Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial" 0 0 156.92 1.66E-17 1567200 1862.4 2854.3 1351.3 1024.5 1880.3 1749.1 1780.2 2865 1233.5 3206.3 FALSE FALSE TRUE 2276.684455 3188.085556 1851.202102 1080.465841 1693.09073 1840.680171 1399.845727 2162.354258 1481.052136 2407.028418 0.945848598 1.324490202 0.769081947 0.448879553 0.703394575 0.764710611 0.581565933 0.898350116 0.615303137 1 11.23303746 -4.872285118 6.58481921 0.700838624 1.131312389 0.48370092 0.170403564 0.149239836 7.994270679 0.04217396 0.089462078 1.34E-05 4.872285118 0.430473765 GTKT(ph)PINR ddPTM_HeLa_A486_30min_R1 2 GTKTPINR 8 1 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 1 0 GT(0.124)KT(0.876)PINR;GT(0.158)KT(0.842)PINR ; 84.658 0.0066555 455210000 845740 807390 540340 720100 863800 1138630 1516110 1270740 736200 1341920 TRUE FALSE FALSE 786457.9934 743409.4759 749574.1188 1676429.192 755454.1494 998157.4073 1136763.242 981420.2421 800014.4088 1005894.498 0.781849384 0.739053129 0.745181647 1.66660539 0.751027221 0.992308249 1.13010186 0.975669163 0.795326359 1 19.94004757 GTLDEEDEEADS(ph)DTDDIDHR ddPTM_HeLa_A485_30min_R1 3 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 GTLDEEDEEADS(1)DTDDIDHR;GTLDEEDEEADS(1)DTDDIDHR;GTLDEEDEEADS(0.973)DT(0.027)DDIDHR ;; 380.03 1.09E-142 31556830000 1867290 1802710 2397960 2333210 2602860 1679600 2063260 1618050 2247520 2938760 TRUE FALSE FALSE 2282662.218 2013521.253 3285065.191 2460667.354 2343710.119 1767541.259 1622427.646 1221220.7 2698576.649 2206181.216 1.034666691 0.912672648 1.489027813 1.115351421 1.06233799 0.801176824 0.735400897 0.553545054 1.223189024 1 21.07311987 -6.134846352 3.409146329 0.826569673 1.142734852 0.266734083 0.213789316 0.312847363 6.726860612 0.074475112 0.074872862 7.33E-07 6.134846352 0.316165179 GTLDEEDEEADS(ph)DTDDIDHR ddPTM_HeLa_A486_30min_R1 4 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 GTLDEEDEEADS(0.999)DT(0.001)DDIDHR;GTLDEEDEEADS(1)DTDDIDHR;GTLDEEDEEADS(0.999)DT(0.001)DDIDHR;GTLDEEDEEADS(0.962)DT(0.038)DDIDHR ;;; 341.3 1.22E-114 22551452000 4465073 6042826 5528168 1673614 6289704 5241622 5867789 5699411 5182681 4816140 TRUE FALSE FALSE 4152094.44 5563970.46 7668822.699 3896257.972 5500790.675 4594963.971 4399606.129 4401779.533 5631919.962 3610147.196 1.150117769 1.541203214 2.124241002 1.079251831 1.523702602 1.272791308 1.218677769 1.219279795 1.560025023 1 21.78362623 GTLDPVEK ddPTM_HeLa_A485_30min_R1 2 GTLDPVEK 8 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 121.58 0.0048201 102997000 212461 244819 217015 260163 324670 294760 351050 402930 246738 409190 FALSE FALSE TRUE 259722.2165 273448.4524 297297.8792 274375.0459 292344.7148 310193.1778 276045.2997 304110.7857 296256.0534 307186.4636 0.845487179 0.890170905 0.967809179 0.893187293 0.951684887 1.009787913 0.898624557 0.989987587 0.96441767 1 18.22875512 -1.810318244 0.38578882 0.974770682 7.26E-13 0.549148936 0.035391281 28.71030711 0.711036188 0.026445552 19.06270644 0.015476821 1.810318244 -0.974770682 GTLGRHS(ph)PYR ddPTM_HeLa_A485_30min_R1 6 GTLGRHSPYR 10 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 GTLGRHS(0.97)PY(0.03)R;GTLGRHS(1)PYR;GTLGRHS(0.999)PY(0.001)R;GTLGRHS(0.665)PY(0.335)R;GTLGRHS(0.985)PY(0.015)R;GTLGRHS(0.998)PY(0.002)R ;;;;; 106.97 0.00043387 5914960000 1052620 1951920 1878120 867711 1990350 1774560 1967020 2455730 1578610 1410060 TRUE FALSE FALSE 1286771.688 2180180.065 2572914.743 915111.8548 1792183.765 1867473.218 1546750.108 1853458.367 1895422.547 1058557.992 1.215589223 2.059575461 2.43058459 0.864489108 1.693042591 1.764167132 1.46118599 1.750927564 1.790570343 1 20.01366888 -9.94188143 3.766968871 0.999931286 1.679834364 0.195356756 0.40749858 40594428.18 78691691.01 38186.0668 0.099513157 1.14E-10 9.94188143 0.679903078 GTLGRHS(ph)PYR ddPTM_HeLa_A486_30min_R1 6 GTLGRHSPYR 10 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 GT(0.006)LGRHS(0.98)PY(0.014)R;GTLGRHS(0.992)PY(0.008)R;GTLGRHS(0.987)PY(0.013)R;GTLGRHS(0.966)PY(0.034)R;GTLGRHS(0.992)PY(0.007)R;GTLGRHS(0.998)PY(0.002)R ;;;;; 89.507 0.0016162 3290370000 1150850 1166010 1252230 193471 1552290 974490 1182721 1241320 1005880 1022710 TRUE FALSE FALSE 1070181.358 1073611.121 1737126.992 450410.2655 1357587.314 854267.3317 886791.6963 958698.5338 1093070.488 766616.7593 1.395979601 1.400453497 2.265965322 0.587529897 1.77088134 1.114334276 1.156760122 1.250557756 1.425836932 1 19.54814601 -5.25967875 24.99999566 1.217093118 1.658764819 0.282789495 0.362426207 225.3405522 3199692.506 0.095864821 0.155688418 5.50E-06 5.25967875 0.441671702 GTLNPGLTK(ac)PPVPR ddPTM_HeLa_A485_30min_R1 2 GTLNPGLTKPPVPR 14 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 0 1 ; GTLNPGLTK(1)PPVPR;GTLNPGLTK(1)PPVPR 179.67 1.24E-09 74705000 23859 36775 44358 27727 44026 36944 42721 43957 40851 42009 FALSE TRUE FALSE 29166.35224 41075.51635 60767.87009 29241.6558 39642.61686 38878.33071 33593.30935 33176.47683 49049.42099 31536.92942 0.924831706 1.302457693 1.926879732 0.927219496 1.257022088 1.232787447 1.065205458 1.051988175 1.555301099 1 14.94475458 GTLNPGLTK(ac)PPVPR ddPTM_HeLa_A486_30min_R1 2 GTLNPGLTKPPVPR 14 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 0 1 ; GTLNPGLTK(1)PPVPR;GTLNPGLTK(1)PPVPR 250.51 3.41E-39 67665000 29723.3 37738.4 38509 9419.9 43454 30889.6 32170.8 36501 32216.1 35051.1 FALSE TRUE FALSE 27639.85016 34747.87174 53420.71611 21930.00326 38003.59413 27078.75521 24121.32557 28190.51911 35008.61749 26274.07642 1.051981798 1.32251544 2.033210046 0.834663145 1.446429306 1.03062634 0.918065594 1.07294044 1.332439509 1 14.68135243 -5.309842017 24.99998094 1.098898187 1.454567746 0.270755585 0.284129684 531.4064628 274470.4842 0.080049646 0.118733029 4.90E-06 5.309842017 0.355669559 GTLS(ph)DSEIETNSATSTIFGK ddPTM_HeLa_A485_30min_R1 5 GTLSDSEIETNSATSTIFGK 20 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 GT(0.125)LS(0.875)DS(0.001)EIETNSATSTIFGK;GT(0.005)LS(0.994)DSEIETNSATSTIFGK;GT(0.004)LS(0.993)DS(0.002)EIETNSATSTIFGK;GTLS(0.998)DS(0.002)EIETNSATSTIFGK;GT(0.05)LS(0.946)DS(0.004)EIETNSATSTIFGK ;;;; 375.76 3.48E-142 1172007000 399080 504488 445331 461157 608508 492595 633736 673929 456826 635451 TRUE FALSE FALSE 487853.9692 563483.4831 610077.4687 486348.8392 547922.8069 518386.5125 498333.1265 508646.8561 548506.7879 477044.7603 1.022658689 1.181196252 1.278868399 1.019503576 1.148577351 1.086662208 1.044625511 1.066245557 1.149801515 1 18.86376511 -5.289793191 24.99981658 1.078848246 1.16293671 0.224748229 0.073809171 1083.234319 955095.0987 0.020670534 0.030665004 5.13E-06 5.289793191 0.084088463 GTLS(ph)DSEIETNSATSTIFGK ddPTM_HeLa_A486_30min_R1 3 GTLSDSEIETNSATSTIFGK 20 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 GTLS(0.991)DS(0.009)EIETNSATSTIFGK;GT(0.107)LS(0.893)DSEIETNSATSTIFGK;GT(0.004)LS(0.989)DS(0.007)EIETNSATSTIFGK ;; 446.72 4.17E-215 1099700000 870275 883440 727782 327358 1107124 873194 983670 1061868 796825 993616 TRUE FALSE FALSE 809273.2166 813432.997 1009598.681 762105.9678 968258.1844 765468.2023 737545.3618 820103.8368 865894.4326 744808.0862 1.086552672 1.092137709 1.355515199 1.023224616 1.300010301 1.027738845 0.990248865 1.101094164 1.162573888 1 19.50650921 -6.313717103 24.9997214 1.05851936 1.16906702 0.235285425 0.103720116 538.8077833 257661.3456 0.035770423 0.031546576 4.86E-07 6.313717103 0.11054766 GTLVQTK ddPTM_HeLa_A485_30min_R1 1 GTLVQTK 7 0 P16402;Q02539;P10412;P16401;P16403 P16402;P10412;P16401;P16403 HIST1H1D;HIST1H1A;HIST1H1E;HIST1H1B;HIST1H1C Histone H1.3;Histone H1.1;Histone H1.4;Histone H1.5;Histone H1.2 0 0 104.37 0.026519 50657000 39418 50985 46923 53564 64955 53929 71331 112660 57477 119300 FALSE FALSE TRUE 48186.39811 56947.25224 64281.77033 56490.06569 58487.85213 56752.63905 56090.54913 85029.95836 69012.10669 89560.70555 0.538030577 0.635850867 0.717745243 0.630746099 0.653052606 0.633677891 0.626285253 0.949411439 0.770562338 1 16.45057827 -7.255537313 24.88810808 0.894990172 0.637586081 0.77139345 0.067999864 204.1791281 860996.4349 0.031641053 0.017647173 5.55E-08 7.255537313 -0.257404092 GTNESLER ddPTM_HeLa_A485_30min_R1 2 GTNESLER 8 0 P08670;B0YJC4;B0YJC5;A0A1X7SBR3;P14136-2;P14136;P14136-3;A0A1W2PR46;A0A1W2PRT3 P08670 VIM;GFAP Vimentin;Glial fibrillary acidic protein 0 0 ; ; 197.66 1.27E-09 87167000 58106 61729 83811 71352 81196 58276 64903 49185 72469 94820 FALSE FALSE TRUE 71031.47924 68947.66958 114816.1766 75249.77909 73111.84114 61327.24125 51035.94384 37122.30163 87012.86357 71183.11903 0.997869723 0.968595792 1.612969172 1.057129557 1.027095218 0.861541923 0.716966951 0.521504286 1.222380597 1 16.11924753 -6.011244707 2.150237394 0.824147667 1.180052227 0.248572615 0.238720563 0.404806167 3.755644533 0.08772418 0.095308478 9.74E-07 6.011244707 0.35590456 GTNVMVTHYFLPPDDAVPS(ph)DDDLGTVPDYNQLKK ddPTM_HeLa_A485_30min_R1 1 GTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKK 34 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 GTNVMVTHYFLPPDDAVPS(0.992)DDDLGT(0.008)VPDYNQLKK 124.33 3.30E-06 110060000 33928 44892 26671 37583 45490 51550 64893 76905 33360 54448 TRUE FALSE FALSE 41475.16655 50141.72889 36537.71277 39636.06412 40960.85587 54249.07829 51028.08042 58043.92817 40055.046 40875.11564 1.014680103 1.226705493 0.893886469 0.969686899 1.002097614 1.327190821 1.248389873 1.420030922 0.979937191 1 15.31893519 -6.246276521 24.60868423 1.224691701 1.02285824 0.243152193 0.148703977 829.0309009 1345482.932 0.048132847 0.047946221 5.67E-07 6.246276521 -0.201833461 GTPGGGGPRPPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 GTPGGGGPRPPSPR 14 1 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 0 GTPGGGGPRPPS(1)PR 52.93 0.022687 420430000 170700 270940 293470 192160 286950 278070 265250 325290 264830 225460 TRUE FALSE FALSE 208671.6261 302624.0761 402036.7653 202657.2142 258380.2505 292629.3152 208577.1706 245512.1175 317978.9518 169256.9713 1.232868723 1.787956347 2.375304026 1.197334519 1.526556032 1.728905539 1.232310664 1.450528836 1.878675658 1 17.36885573 -5.319842715 24.99994917 1.457551584 1.797646962 0.18435946 0.351617231 463.722378 198498.4542 0.098511204 0.146115773 4.79E-06 5.319842715 0.340095378 GTPGPDS(ph)SGSLGSGEFTGVK ddPTM_HeLa_A486_30min_R1 1 GTPGPDSSGSLGSGEFTGVK 20 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 GT(0.024)PGPDS(0.887)S(0.09)GSLGSGEFTGVK 243.61 2.65E-46 136960000 63111 75393 47466 26331 56639 93444 77875 82176 63625 89430 TRUE FALSE FALSE 58687.24481 69418.5841 65846.10638 61299.8987 49534.80848 81915.82935 58389.85132 63466.31869 69140.06623 67036.14591 0.875456726 1.035539606 0.982247793 0.914430534 0.738926855 1.221965079 0.87102041 0.946747726 1.031384864 1 16.03265159 -6.243672902 24.99639288 1.001945189 0.920667947 0.176826778 0.110257732 1958.750659 2755848.696 0.036755663 0.036683341 5.71E-07 6.243672902 -0.081277241 GTPGS(ph)PSGTQEPR ddPTM_HeLa_A485_30min_R1 1 GTPGSPSGTQEPR 13 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 GTPGS(0.998)PS(0.001)GTQEPR 162.48 8.72E-12 490940000 250470 441550 455520 275390 490590 389610 434340 475060 434110 386630 TRUE FALSE FALSE 306186.1874 493185.4315 624035.8038 290433.8584 441745.137 410009.3771 341539.7108 358550.7901 521231.8951 290250.2564 1.054904107 1.699173112 2.149992257 1.000632564 1.521945725 1.412606425 1.176707697 1.235316015 1.79580167 1 18.14693782 -5.28472111 24.99054937 1.32398363 1.641138399 0.167529151 0.333871215 1408.197861 1511552.808 0.093289951 0.138467713 5.19E-06 5.28472111 0.317154769 GTPGS(ph)PSGTQEPR ddPTM_HeLa_A486_30min_R1 2 GTPGSPSGTQEPR 13 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 GTPGS(0.918)PS(0.082)GTQEPR;GTPGS(0.993)PS(0.007)GTQEPR ; 221.63 2.18E-27 1252040000 1079310 1209810 1302260 379660 1524420 960690 1227430 1240010 1063780 1092300 TRUE FALSE FALSE 1003655.943 1113940.25 1806529.948 883867.667 1333213.029 842169.8354 920314.0316 957686.7922 1155989.307 818780.9703 1.225792952 1.360486247 2.206365332 1.079492195 1.628290199 1.028565472 1.124005155 1.169649548 1.411841932 1 19.64311805 -6.260715494 24.99327076 1.155990062 1.508201366 0.2581491 0.299075216 97.69461858 3373096.973 0.101480354 0.095817632 5.49E-07 6.260715494 0.352211304 GTPKPPGPPAQPPGPPNAS(ph)SNPDLR ddPTM_HeLa_A485_30min_R1 1 GTPKPPGPPAQPPGPPNASSNPDLR 25 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GTPKPPGPPAQPPGPPNAS(0.56)S(0.44)NPDLR 62.034 0.0098477 646350000 41392 130150 145450 23381 108410 90947 50685 86610 95160 42772 TRUE FALSE FALSE 50599.5076 145369.9103 199258.0077 24658.24483 97616.31975 95708.84429 39855.73569 65368.7617 114257.7391 32109.72756 1.575831109 4.527285698 6.205534049 0.767936906 3.04008558 2.980680671 1.241235561 2.035793097 3.558352805 1 14.9707228 -5.273426633 24.99669768 2.1737521 4.145323974 0.313175468 1.362133436 900.0661311 1876881.768 0.383036473 0.573077283 5.33E-06 5.273426633 1.971571874 GTPKPPGPPAQPPGPPNAS(ph)SNPDLRR ddPTM_HeLa_A485_30min_R1 2 GTPKPPGPPAQPPGPPNASSNPDLRR 26 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GTPKPPGPPAQPPGPPNAS(0.572)S(0.428)NPDLRR;GTPKPPGPPAQPPGPPNAS(0.675)S(0.325)NPDLRR ; 149.74 1.89E-09 860330000 118636 156250 104372 113912 148885 157310 191789 214720 128164 200038 TRUE FALSE FALSE 145026.1689 174522.0783 142983.5461 120134.7241 134061.4866 165546.5084 150811.7134 162059.5833 153885.3392 150172.208 0.965732414 1.162146316 0.952130544 0.799979741 0.892718356 1.1023778 1.00425848 1.079158291 1.024725821 1 17.19625832 -6.26421098 24.96920423 1.044686119 0.957354374 0.193616823 0.089178547 487.8146349 4394679.339 0.034197742 0.031524329 5.44E-07 6.26421098 -0.087331745 GTPKPPGPPAQPPGPPNAS(ph)SNPDLRR ddPTM_HeLa_A486_30min_R1 2 GTPKPPGPPAQPPGPPNASSNPDLRR 26 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GTPKPPGPPAQPPGPPNAS(0.579)S(0.421)NPDLRR;GTPKPPGPPAQPPGPPNAS(0.5)S(0.5)NPDLRR ; 158.97 1.78E-10 626870000 215463 205823 159524 103891 213147 179876 247011 261520 159989 326130 TRUE FALSE FALSE 200360.1564 189512.8359 221295.965 241863.4984 186412.1157 157684.728 185206.2352 201977.6049 173856.9753 244464.9252 0.819586516 0.775214832 0.905225831 0.989358691 0.76253113 0.645019844 0.757598396 0.826202797 0.711173495 1 17.89926796 GTPS(ph)QSPVVGR ddPTM_HeLa_A486_30min_R1 1 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 GTPS(0.606)QS(0.393)PVVGR 86.772 0.0023208 0 68506 93600 79177 36880 100970 83989 92738 103850 69444 106250 TRUE FALSE FALSE 63704.08317 86182.79511 109836.4548 85858.50381 88305.40109 73627.29112 69533.97152 80205.62203 75463.46183 79644.30843 0.799857321 1.082096095 1.379087307 1.07802435 1.108747164 0.924451384 0.873056379 1.007047755 0.947506022 1 16.28128365 -6.257265669 22.93752717 0.946018039 1.10459138 0.205985246 0.134858964 178.6438333 981776.0578 0.047553427 0.045851661 5.53E-07 6.257265669 0.158573341 GTPSQS(ph)PVVGR ddPTM_HeLa_A485_30min_R1 9 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 GTPS(0.004)QS(0.996)PVVGR;GTPS(0.006)QS(0.994)PVVGR;GTPS(0.005)QS(0.995)PVVGR;GTPSQS(1)PVVGR;GTPS(0.058)QS(0.942)PVVGR;GTPS(0.033)QS(0.967)PVVGR;GT(0.006)PS(0.109)QS(0.885)PVVGR;GTPS(0.007)QS(0.993)PVVGR;GT(0.001)PS(0.07)QS(0.929)PVVGR ;;;;;;;; 257.38 2.65E-27 28833989000 3936781 5952570 6135870 3874645 5799790 5275830 5788450 6513400 4930910 5179620 TRUE FALSE FALSE 4812504.352 6648671.281 8405783.648 4086307.045 5222342.543 5552064.301 4551700.37 4915978.437 5920498.408 3888436.058 1.237645233 1.709857429 2.161738942 1.050887036 1.34304447 1.427839938 1.170573542 1.264255954 1.52259117 1 21.89075858 -5.282839587 24.97905727 1.272637099 1.703758343 0.392042791 0.255452253 814.2296613 950395.0186 0.071880627 0.106725828 5.21E-06 5.282839587 0.431121244 GTPSQS(ph)PVVGR ddPTM_HeLa_A486_30min_R1 7 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 GTPS(0.062)QS(0.938)PVVGR;GTPS(0.006)QS(0.994)PVVGR;GTPS(0.005)QS(0.995)PVVGR;GTPS(0.006)QS(0.994)PVVGR;GTPS(0.033)QS(0.967)PVVGR;GTPS(0.058)QS(0.942)PVVGR;GT(0.002)PS(0.076)QS(0.922)PVVGR ;;;;;; 251.87 4.08E-23 21668190000 6866300 7257810 6935060 2068354 8177210 6170600 6690700 6942400 6260380 7124850 TRUE FALSE FALSE 6385007.828 6682674.703 9620500.959 4815232.641 7151548.072 5409334.11 5016616.093 5361767.072 6803034.779 5340741.185 1.195528412 1.251263537 1.801341916 0.901603818 1.339055353 1.012843334 0.939310841 1.003936885 1.273799749 1 22.34860854 -5.29209993 24.97003312 1.071116521 1.399566832 0.390735781 0.199247183 696.0423912 566857.1896 0.055887094 0.08290342 5.10E-06 5.29209993 0.32845031 GTQEVAPPTPLT(ph)PT(ph)SHTANTSPRPVSGMER ddPTM_HeLa_A486_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 2 0 GTQEVAPPTPLT(0.987)PT(0.278)S(0.25)HT(0.203)ANT(0.149)S(0.134)PRPVSGMER 106.19 0.00020302 143550000 109100 125250 115680 39408 135210 101970 126790 138350 122660 127310 TRUE FALSE FALSE 101452.6534 115324.7338 160474.394 91743.81557 118250.701 89389.97815 95065.80095 106850.7252 133292.2676 95430.74735 1.063102367 1.208465165 1.681579559 0.961365368 1.239125799 0.93669997 0.996175799 1.119667698 1.396743411 1 16.54216655 GTQEVAPPTPLT(ph)PTSHTANT(ph)SPRPVSGMER ddPTM_HeLa_A486_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 2 0 GTQEVAPPT(0.001)PLT(0.993)PT(0.201)S(0.175)HT(0.133)ANT(0.266)S(0.231)PRPVSGMER 93.34 0.00072538 137850000 97625 129160 118120 38103 142750 111770 136500 130180 116350 132490 TRUE FALSE FALSE 90781.99164 118924.8912 163859.2274 88705.70962 124844.9639 97980.95379 102346.2563 100540.8558 126435.3117 99313.64163 0.914093876 1.197467833 1.649916614 0.893187564 1.257077697 0.986581019 1.030535731 1.012356955 1.273091084 1 16.59970428 GTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_HeLa_A485_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GTQEVAPPTPLTPT(0.231)S(0.231)HT(0.073)ANT(0.231)S(0.231)PRPVS(0.001)GMER 132.62 2.45E-06 1847900000 90014 129960 189010 127190 172500 129870 131980 146380 160120 182680 TRUE FALSE FALSE 110037.3038 145157.6915 258932.6644 134138.0676 155325.2943 136669.7924 103781.3948 110480.0755 192254.6153 137141.238 0.802364813 1.058453997 1.888072969 0.978101624 1.132593643 0.996562335 0.756748272 0.805593395 1.401873121 1 17.06530293 GTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_HeLa_A486_30min_R1 2 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GTQEVAPPTPLTPT(0.198)S(0.198)HT(0.198)ANT(0.198)S(0.198)PRPVS(0.008)GMER;GTQEVAPPTPLTPT(0.229)S(0.229)HT(0.229)ANT(0.129)S(0.129)PRPVS(0.055)GMER ; 115.18 9.15E-05 1423360000 73120 89212 75778 40249 99912 78169 108993 97478 83663 93165 TRUE FALSE FALSE 67994.66559 82142.51622 105121.271 93701.70607 87380.10532 68525.30354 81721.79859 75284.38733 90914.9762 69835.8776 0.973635156 1.176222295 1.505261688 1.341741656 1.251220838 0.981233514 1.170197918 1.078018777 1.30183767 1 16.09168078 -6.065194756 14.54731989 1.115228244 1.26656209 0.179805789 0.15068456 5.507198835 1227.071146 0.051930061 0.05193676 8.61E-07 6.065194756 0.151333845 GTQEVAPPTPLTPTSHTANT(ph)SPRPVSGMER ddPTM_HeLa_A485_30min_R1 3 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GTQEVAPPTPLTPT(0.029)S(0.029)HT(0.132)ANT(0.46)S(0.348)PRPVS(0.001)GMER;GTQEVAPPTPLTPTSHT(0.001)ANT(0.603)S(0.396)PRPVSGMER;GTQEVAPPTPLTPT(0.001)S(0.005)HT(0.106)ANT(0.443)S(0.443)PRPVS(0.002)GMER ;; 183.17 1.28E-20 2472130000 370486 486826 579962 459707 644928 452734 574753 539847 550342 680878 TRUE FALSE FALSE 452899.3325 543756.0659 794514.078 484819.6294 580716.7038 476438.4522 451952.3262 407448.6768 660790.5914 511147.6452 0.886044055 1.063794524 1.554372959 0.948492346 1.136103647 0.932095563 0.88419135 0.797125215 1.292758751 1 18.96338055 -5.979711279 1.982976809 0.965787206 1.146778008 0.083065143 0.206699355 0.728522012 5.789659257 0.076884596 0.085596766 1.05E-06 5.979711279 0.180990802 GTQEVAPPTPLTPTSHTANT(ph)SPRPVSGMER ddPTM_HeLa_A486_30min_R1 4 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 GTQEVAPPTPLTPT(0.003)S(0.01)HT(0.036)ANT(0.475)S(0.475)PRPVS(0.002)GMER;GTQEVAPPTPLTPTS(0.002)HT(0.014)ANT(0.85)S(0.131)PRPVS(0.003)GMER;GTQEVAPPTPLTPT(0.003)S(0.003)HT(0.092)ANT(0.451)S(0.451)PRPVS(0.001)GMER;GTQEVAPPTPLTPT(0.153)S(0.153)HT(0.153)ANT(0.27)S(0.27)PRPVS(0.001)GMER ;;; 154.23 9.73E-10 4434180000 333042 421221 445008 128282 450721 358274 428296 444536 415510 340460 TRUE FALSE FALSE 309697.4756 387841.9139 617327.0153 298646.979 394187.3694 314073.7965 321131.8107 343324.857 451526.7414 255206.6 1.213516718 1.519717413 2.418930448 1.170216519 1.544581407 1.230664867 1.258320948 1.345282046 1.769259656 1 17.96130611 GTQS(ph)TEGS(ph)PVSK ddPTM_HeLa_A485_30min_R1 2 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 2 0 GTQS(0.999)T(0.002)EGS(1)PVSK;GTQS(1)TEGS(0.992)PVS(0.008)K ; 185.74 1.16E-12 1445810000 2349100 2408700 1998600 2987800 3254700 2575300 3452000 3716700 2368000 3700800 TRUE FALSE FALSE 2871649.191 2690376.512 2737965.309 3151015.948 2930650.64 2710138.726 2714452 2805173.497 2843235.879 2778258.668 1.033614769 0.9683679 0.985496901 1.134169393 1.054851614 0.975481065 0.977033575 1.009687661 1.023387747 1 21.4057495 -8.824902346 13.47666924 1 1.017392941 0.012826074 0.047121804 0 0 0.049377831 0.011975883 1.50E-09 8.824902346 0.017392941 GTQS(ph)TEGS(ph)PVSK ddPTM_HeLa_A486_30min_R1 2 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 2 0 GTQS(0.981)T(0.021)EGS(0.94)PVS(0.058)K;GT(0.014)QS(0.976)T(0.03)EGS(0.979)PVSK ; 176.42 7.65E-11 1318670000 3224500 3434200 2479600 1474140 3689200 3585800 4421800 4299500 2821400 4253600 TRUE FALSE FALSE 2998479.201 3162061.485 3439767.526 3431872.419 3226466.136 3143420.454 3315418.871 3320597.707 3065961.224 3188470.874 0.940412919 0.991717224 1.07881416 1.076338017 1.011916453 0.985870838 1.039814696 1.041438934 0.961577303 1 21.60443327 -4.459764596 4.399509866 1.027065332 0.946626813 0.343698731 0.035445012 0.247321521 9.171597663 0.009362096 0.040201776 3.47E-05 4.459764596 -0.08043852 GTQSIPNDS(ph)PAR ddPTM_HeLa_A485_30min_R1 7 GTQSIPNDSPAR 12 0 J3QRX6;H9KV77;Q9NQ92 J3QRX6 COPRS Coordinator of PRMT5 and differentiation stimulator 1 0 GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR ;;;;;; 242.43 7.39E-28 2486110000 6150730 9151660 9205710 5450760 7319170 7377230 7199970 7251120 7143380 7036250 TRUE FALSE FALSE 7518938.669 10221867.03 12611285.21 5748521.217 6590447.736 7763490.355 5661637.591 5472771.451 8576990.843 5282242.368 1.423436894 1.935137829 2.387487043 1.088272899 1.247660989 1.469733839 1.071824653 1.036069735 1.623740496 1 22.33271907 -5.279655658 24.96388339 1.226549851 1.917332348 0.555440905 0.285185532 572.3617781 784372.5425 0.08024866 0.119288953 5.25E-06 5.279655658 0.690782497 GTQSIPNDS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 GTQSIPNDSPAR 12 0 J3QRX6;H9KV77;Q9NQ92 J3QRX6 COPRS Coordinator of PRMT5 and differentiation stimulator 1 0 GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR ; 180.95 7.98E-13 1717450000 838270 958770 901990 228620 898810 785540 755440 795500 815210 880530 TRUE FALSE FALSE 779511.6018 882793.5734 1251264.684 532238.9138 786072.8687 688628.0616 566420.9218 614382.0156 885873.0592 660039.5567 1.181007402 1.337485859 1.895741962 0.806374267 1.190948119 1.043313321 0.858162084 0.930826053 1.342151467 1 19.33219296 -5.280938193 24.99947292 1.02244065 1.458019238 0.457559326 0.222818228 717.0606407 919343.3616 0.062662822 0.093095067 5.24E-06 5.280938193 0.435578588 GTQSTEGS(ph)PVSK ddPTM_HeLa_A486_30min_R1 1 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 1 0 GTQST(0.006)EGS(0.994)PVSK 165.89 2.24E-10 256520000 451530 461610 253950 143550 458210 475810 556590 514890 332490 524360 TRUE FALSE FALSE 419880.0787 425030.3424 352286.241 334191.6546 400737.0292 417109.3999 417325.295 397660.787 361310.5009 393056.843 1.068242638 1.081345739 0.896273013 0.850237467 1.019539632 1.061193584 1.061742856 1.011713176 0.919232186 1 18.58437844 GTRPEDSSVLIPTDNS(ph)TPHKEDLSSK ddPTM_HeLa_A485_30min_R1 1 GTRPEDSSVLIPTDNSTPHKEDLSSK 26 2 Q7KZ85-2;U3KQE3;U3KQP6;U3KQ49;L0R819;U3KQP1 Q7KZ85-2 SUPT6H;ASNSD1 Transcription elongation factor SPT6 1 0 GTRPEDSSVLIPTDNS(0.5)T(0.5)PHKEDLSSK 174.02 1.51E-14 302020000 289590 211720 149750 351520 349520 267140 432450 434300 218750 479230 TRUE FALSE FALSE 354008.2964 236478.8123 205148.7566 370722.6475 314720.5616 281127.0373 340053.5247 327787.244 262651.1185 359766.7806 0.983993841 0.657311417 0.570227068 1.030452692 0.874790499 0.781414662 0.945205458 0.911110369 0.730059396 1 18.45670245 -5.265225943 24.99986833 0.888817504 0.729190844 0.23767799 0.129767346 471.7302254 3114488.841 0.03605393 0.055835221 5.43E-06 5.265225943 -0.159626661 GTRPEDSSVLIPTDNST(ph)PHKEDLSSK ddPTM_HeLa_A486_30min_R1 1 GTRPEDSSVLIPTDNSTPHKEDLSSK 26 2 Q7KZ85-2;U3KQE3;U3KQP6;U3KQ49;L0R819;U3KQP1 Q7KZ85-2 SUPT6H;ASNSD1 Transcription elongation factor SPT6 1 0 GTRPEDSSVLIPT(0.005)DNS(0.136)T(0.858)PHKEDLSSK 116.39 0.0002159 272390000 241580 192040 102750 87796 187980 219580 289130 264420 145380 297030 TRUE FALSE FALSE 224646.4895 176822.051 142537.5517 204393.525 164401.7956 192490.4521 216786.6159 204217.3382 157981.6555 222651.7547 1.00895899 0.794164193 0.640181578 0.917996471 0.738380867 0.864535976 0.973657792 0.91720516 0.709545971 1 17.76442946 -6.514376318 24.0407229 0.896901837 0.812715263 0.092862274 0.117161642 609.0158712 1722013.772 0.043123717 0.035144965 3.06E-07 6.514376318 -0.084186574 GTS(ph)PRPPEGGLGYSQLGDDDLK ddPTM_HeLa_A485_30min_R1 3 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.448)S(0.552)PRPPEGGLGYSQLGDDDLK;GT(0.145)S(0.855)PRPPEGGLGYSQLGDDDLK;GT(0.12)S(0.88)PRPPEGGLGYSQLGDDDLK ;; 160.99 5.13E-14 1210990000 1263170 1007410 835050 1863570 1106240 1125900 1405760 1042660 982550 2221950 TRUE FALSE FALSE 1544157.809 1125217.836 1143969.744 1965372.11 996098.8614 1184850.383 1105407.892 786946.0002 1179738.773 1668058.757 0.925721472 0.674567267 0.685809022 1.178239137 0.597160536 0.710316935 0.66269122 0.471773549 0.707252528 1 20.66973868 GTS(ph)PRPPEGGLGYSQLGDDDLK ddPTM_HeLa_A486_30min_R1 2 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.022)S(0.978)PRPPEGGLGYSQLGDDDLK;GT(0.042)S(0.958)PRPPEGGLGYSQLGDDDLK ; 183.44 8.23E-20 1046430000 1143980 1220940 586850 512320 911010 1297990 1400530 1184880 946170 1819690 TRUE FALSE FALSE 1063792.91 1124188.268 814094.0364 1192706.851 796742.631 1137857.191 1050102.581 915108.6897 1028184.777 1364027.78 0.779890942 0.824168162 0.59683098 0.874400704 0.584110267 0.834189162 0.769854248 0.670887135 0.753785805 1 20.3794416 -10.01045007 2.677350042 1.000560028 0.741729121 0.407849376 0.092842479 451801.8069 597106.8475 2400.167027 0.022301556 9.76E-11 10.01045007 -0.258830908 GTS(ph)PRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK ddPTM_HeLa_A486_30min_R1 1 GTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK 45 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.232)S(0.756)PRPPEGGLGY(0.001)S(0.01)QLGDDDLKET(0.001)GFHLT(0.001)TTNQGASAAGPGFSLK 70.29 0.0002947 1143800000 244490 319480 170730 15564 277410 334340 353800 320030 284050 241070 TRUE FALSE FALSE 227352.5135 294163.2413 236841.2283 36233.77856 242614.6511 293092.5301 265275.4979 247166.1552 308671.6827 180704.5029 1.258145259 1.627868905 1.310654823 0.200513977 1.342604347 1.6219437 1.468007126 1.367791899 1.708157117 1 17.46327293 -5.9878672 24.99552051 1.461002761 1.104574571 0.144115162 0.382813751 452.1793487 931556.5362 0.124793601 0.141410583 1.03E-06 5.9878672 -0.35642819 GTS(ph)PRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF ddPTM_HeLa_A486_30min_R1 1 GTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF 46 3 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.188)S(0.81)PRPPEGGLGYS(0.001)QLGDDDLKETGFHLTTTNQGASAAGPGFSLKF 164.29 1.87E-16 1739500000 340770 351430 223270 32876 413460 319620 470330 477670 308260 307190 TRUE FALSE FALSE 316883.7827 323581.4069 309726.1234 76536.98946 361599.9914 280188.5341 352648.4594 368914.9685 334980.225 230267.6245 1.376154305 1.405240566 1.345070216 0.332382764 1.570346644 1.216795173 1.531472173 1.602113928 1.454743044 1 17.81295206 GTS(ph)PSSSSRPQR ddPTM_HeLa_A485_30min_R1 2 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 GT(0.168)S(0.83)PS(0.002)SSSRPQR;GT(0.369)S(0.63)PS(0.001)SSSRPQR ; 83.633 0.0019466 13384700000 1191740 1545790 1815820 1375210 2002920 1342880 1643080 1619300 1528690 1722770 TRUE FALSE FALSE 1456838.452 1726556.694 2487567.381 1450334.24 1803502.252 1413191.12 1292022.535 1222164.136 1835484.061 1293315.144 1.126437325 1.334985291 1.923403891 1.121408225 1.394480116 1.092688914 0.999000546 0.94498556 1.419208666 1 20.30264243 -6.098156387 1.785804255 1.078503334 1.420578649 0.253544305 0.241794623 0.488087793 3.103680305 0.09623651 0.098827448 7.98E-07 6.098156387 0.342075315 GTS(ph)PSSSSRPQR ddPTM_HeLa_A486_30min_R1 1 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 GT(0.276)S(0.723)PSSSSRPQR 119.96 6.60E-05 3412300000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GTS(ph)SPDYR ddPTM_HeLa_A486_30min_R1 1 GTSSPDYR 8 0 Q66K14-2;G3V133;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 0 GT(0.095)S(0.52)S(0.384)PDYR 66.621 0.014114 0 196220 240410 236140 68342 274940 220960 239070 242250 219090 223280 TRUE FALSE FALSE 182465.9913 221359.036 327579.732 159103.6298 240454.4615 193700.2018 179252.1574 187094.9633 238080.8976 167369.2347 1.090200308 1.322579006 1.957227878 0.950614551 1.436670616 1.157322623 1.07099825 1.117857554 1.422489014 1 17.35267483 GTSFFPTAGGFRS(ph)PS(ph)PGLFR ddPTM_HeLa_A485_30min_R1 2 GTSFFPTAGGFRSPSPGLFR 20 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 2 0 GTSFFPTAGGFRS(1)PS(1)PGLFR;GTSFFPTAGGFRS(1)PS(1)PGLFR ; 159.98 3.47E-13 238240000 152194 264682 266037 168595 260809 230637 260752 259374 194055 207157 TRUE FALSE FALSE 186049.0302 295634.2575 364455.157 177804.9179 234841.9402 242712.7967 205040.2051 195762.1198 233000.0585 155516.5723 1.196329288 1.900982339 2.343513309 1.143318138 1.510076622 1.560687668 1.318446015 1.25878623 1.498232986 1 17.2467088 -7.093217451 0.340778576 1.01748867 1.788802829 0.241581432 0.329254588 1.979466785 0.676802858 0.477557105 0.528389055 8.07E-08 7.093217451 0.771314159 GTSFFPTAGGFRS(ph)PS(ph)PGLFR ddPTM_HeLa_A486_30min_R1 1 GTSFFPTAGGFRSPSPGLFR 20 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 2 0 GT(0.001)S(0.001)FFPT(0.008)AGGFRS(0.991)PS(1)PGLFR 70.533 0.0053155 98434000 160270 188930 171880 82219 220280 153350 167770 174430 158250 182160 TRUE FALSE FALSE 149035.9006 173958.4987 238436.5391 191409.9871 192650.4284 134431.2361 125792.1715 134716.0968 171967.2374 136545.9503 1.091470675 1.273992369 1.746200005 1.401799077 1.4108835 0.984512802 0.921244249 0.986598991 1.259409283 1 17.059027 -6.258920237 24.75316913 1.022696192 1.399723812 0.509946778 0.173379549 167.3227803 1644123.42 0.062010487 0.05929944 5.51E-07 6.258920237 0.37702762 GTSGS(ph)LADVFANTR ddPTM_HeLa_A485_30min_R1 1 GTSGSLADVFANTR 14 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 GTS(0.001)GS(0.999)LADVFANTR 201.72 7.78E-22 96012000 67338 86963 85717 66978 89245 79425 90637 96540 71563 93335 TRUE FALSE FALSE 82317.10579 97132.56637 117427.2853 70636.83854 80359.45444 83583.57019 71271.66451 72863.41363 85925.03769 70068.3022 1.174812336 1.386255458 1.675897397 1.00811403 1.14687315 1.192887048 1.017174133 1.03989124 1.226303977 1 16.09647432 -5.28389828 24.99143347 1.095439835 1.409715152 0.54495702 0.134831467 588.9470723 655357.0877 0.038220716 0.056738306 5.20E-06 5.28389828 0.314275317 GTSPSSSS(ph)RPQR ddPTM_HeLa_A485_30min_R1 1 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 GT(0.001)S(0.012)PS(0.018)S(0.044)S(0.044)S(0.881)RPQR 115.05 0.0037761 582810000 191830 248890 296890 224080 318740 226370 260570 269640 260350 286010 TRUE FALSE FALSE 234501.9217 277995.5204 406721.9656 236320.923 287005.1264 238222.3832 204897.0908 203510.3672 312599.8569 214712.9706 1.092164675 1.294730913 1.894258947 1.100636456 1.336692076 1.109492279 0.954283713 0.947825213 1.455896474 1 17.71204982 -5.994161598 1.712934349 1.082123884 1.392736711 0.199529474 0.247514081 0.567176346 3.376030305 0.096833564 0.10751393 1.01E-06 5.994161598 0.310612827 GTSPSSSS(ph)RPQR ddPTM_HeLa_A486_30min_R1 2 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 GT(0.001)S(0.059)PS(0.092)S(0.092)S(0.092)S(0.664)RPQR;GT(0.012)S(0.176)PS(0.023)S(0.046)S(0.046)S(0.698)RPQR ; 124.33 0.00060217 5973400000 1678110 2039480 1925240 594660 2276680 1745000 1951350 1993360 1663900 1732330 TRUE FALSE FALSE 1560483.155 1877864.177 2670744.488 1384398.532 1991117.565 1529719.642 1463101.591 1539515.443 1808128.192 1298543.292 1.201718236 1.44613136 2.056723486 1.066116579 1.53334708 1.178027449 1.126725308 1.185571133 1.392428117 1 20.30846268 -5.967605589 1.403621849 1.185856388 1.513866475 0.213463295 0.260963499 0.653825522 2.661423239 0.107695214 0.124411334 1.08E-06 5.967605589 0.328010087 GTSS(ph)PDYR ddPTM_HeLa_A485_30min_R1 4 GTSSPDYR 8 0 Q66K14-2;G3V133;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 0 GT(0.003)S(0.041)S(0.956)PDYR;GTS(0.011)S(0.988)PDYR;GT(0.004)S(0.047)S(0.949)PDYR;GT(0.022)S(0.084)S(0.894)PDYR ;;; 164.57 3.45E-05 4430990000 4217630 5502580 5952890 4705860 6305880 4886760 5376130 5109800 5501850 6227930 TRUE FALSE FALSE 5155827.243 6146058.865 8155111.731 4962929.216 5678044.446 5142623.197 4227475.907 3856613.538 6606020.829 4675421.668 1.102751283 1.314546431 1.744251602 1.061493394 1.214445423 1.099927143 0.904191367 0.824869672 1.412925143 1 22.15666505 -5.404388606 20.61174643 1.066449753 1.383797387 0.315527349 0.211168174 6.20769215 1059.640432 0.060258821 0.089378237 3.94E-06 5.404388606 0.317347634 GTSSFGK(ac)R ddPTM_HeLa_A485_30min_R1 2 GTSSFGKR 8 1 P61927;D6R9X9;D6RG19 P61927 RPL37 60S ribosomal protein L37;Ribosomal protein L37 0 1 ; GTSSFGK(1)R;GTSSFGK(1)R 137.62 6.90E-05 46908000 56402 68548 86575 61528 93824 64769 78596 58556 81407 97577 FALSE TRUE FALSE 68948.43032 76564.09231 118602.6952 64889.11884 84482.55312 68160.20469 61803.32253 44195.04919 97744.63819 73252.84967 0.941238882 1.045202919 1.619086434 0.885823816 1.153300568 0.930478541 0.843698543 0.60332191 1.33434588 1 16.16059726 -6.081074209 1.727792644 0.910028482 1.159956074 0.107050507 0.251969031 0.702333817 4.198404456 0.099365869 0.103371971 8.30E-07 6.081074209 0.249927593 GTSSFGK(ac)R ddPTM_HeLa_A486_30min_R1 1 GTSSFGKR 8 1 P61927;D6R9X9;D6RG19 P61927 RPL37 60S ribosomal protein L37;Ribosomal protein L37 0 1 GTSSFGK(1)R 163.72 2.62E-07 0 33904 46080 38049 13075 45897 39223 41752 41914 36672 38209 FALSE TRUE FALSE 31527.50468 42428.45298 52782.59179 30439.26077 40140.17029 34384.06505 31305.20799 32371.09718 39850.75849 28641.2177 1.100773892 1.481377413 1.842889235 1.062778164 1.401482671 1.200509888 1.093012466 1.130227685 1.39137794 1 14.80580521 -5.303604909 24.99963827 1.194308297 1.475650866 0.294875412 0.206554834 608.8623753 360988.834 0.058210461 0.086340953 4.97E-06 5.303604909 0.281342569 GTTITLVLK ddPTM_HeLa_A485_30min_R1 2 GTTITLVLK 9 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 195.81 2.54E-11 162486000 252420 277980 259140 259800 302640 295130 348320 383130 199771 331030 FALSE FALSE TRUE 308569.9582 310487.3429 355006.6697 273992.2162 272508.099 310582.5504 273898.5865 289166.7668 239863.2073 248510.3132 1.241678682 1.249394196 1.428538982 1.102538614 1.096566559 1.249777309 1.10216185 1.16360067 0.965204237 1 17.9229462 -6.551375988 0.359381742 0.981371635 1.323133128 0.515041168 0.090548108 1.348098429 0.401346258 0.111035864 0.168186755 2.81E-07 6.551375988 0.341761494 GTTITLVLK ddPTM_HeLa_A486_30min_R1 2 GTTITLVLK 9 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 209.37 3.86E-12 120709000 224544 243535 188396 104609 240732 235928 277119 268120 214669 294640 FALSE FALSE TRUE 208804.6251 224236.3997 261347.9766 243535.0386 210537.1478 206821.6021 207780.8951 207074.929 233276.6818 220860.2262 0.945415246 1.015286471 1.183318432 1.102665893 0.953259677 0.936436613 0.940780052 0.937583614 1.056218613 1 17.75277411 -5.769896192 24.98816478 0.964381785 1.067047361 0.306394597 0.066440718 220.8363625 652525.0643 0.021906735 0.025241074 1.70E-06 5.769896192 0.102665576 GTVEPQLEAR ddPTM_HeLa_A485_30min_R1 2 GTVEPQLEAR 10 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;A0A669KBC6 Q60FE5 FLNA Filamin-A 0 0 ; ; 167.93 1.02E-05 88705000 61469 86914 98177 64842 98297 81439 95946 95004 87968 97778 FALSE FALSE TRUE 75142.56698 97077.83625 134496.7578 68384.15427 88510.20554 85703.02011 75446.35329 71704.12004 105622.3707 73403.74407 1.023688477 1.322518864 1.832287433 0.931616706 1.205799604 1.167556522 1.027827044 0.97684554 1.438923478 1 16.16356603 GTVSFHSHSDHR ddPTM_HeLa_A485_30min_R1 4 GTVSFHSHSDHR 12 0 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 0 0 ;;; ;;; 162.23 5.64E-10 492340000 96270 293627 394537 31521.4 373438 135615 168501 179993 206045 65188.1 FALSE FALSE TRUE 117684.9294 327964.1234 540492.6544 33243.33427 336257.2015 142715.5917 132499.3848 135849.4345 247396.3415 48937.90637 2.404780631 6.701637805 11.04445806 0.679296209 6.871099041 2.916258628 2.707500068 2.775955177 5.055311106 1 15.57866476 -5.888504568 1.207223856 3.017350111 6.171592971 0.165184795 2.782313168 0.830080087 2.553832483 1.195421984 1.527326686 1.29E-06 5.888504568 3.15424286 GTVSFHSHSDHR ddPTM_HeLa_A486_30min_R1 2 GTVSFHSHSDHR 12 0 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 0 0 ; ; 181.66 1.49E-12 193413000 116323 131235 198902 2532.06 188543 56002 64716 69700 128987 19370.9 FALSE FALSE TRUE 108169.3584 120835.4607 275922.1812 5894.763643 164894.1788 49093.04263 48523.3723 53830.83154 140167.697 14520.30056 7.449526129 8.321829165 19.0025117 0.405967054 11.35611334 3.380993557 3.341760876 3.707280805 9.653222843 1 13.8257837 -5.280717432 24.99869643 4.971757155 11.26434488 0.343740297 4.349416775 949.8077956 1231655.209 1.196136882 1.77710151 5.24E-06 5.280717432 6.292587721 GTVTDFPGFDER ddPTM_HeLa_A485_30min_R1 2 GTVTDFPGFDER 12 0 P08758;E9PHT9;D6RBE9;D6RCN3 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 162.26 1.28E-05 72333000 83364 99348 124169 112046 170783 117449 170427 184627 188697 229600 FALSE FALSE TRUE 101908.0342 110965.8844 170104.2802 118166.7893 153779.2449 123598.448 134013.8792 139346.9388 226566.7571 172364.9455 0.591234105 0.643784524 0.986884426 0.685561608 0.892172387 0.717074157 0.777500778 0.808441289 1.314459599 1 17.39510687 -7.676381063 6.843812279 1.153809268 0.76471008 0.595940271 0.130151231 0.132841971 8.630385816 0.087689964 0.032196781 2.11E-08 7.676381063 -0.389099188 GTYVPSS(ph)PTR ddPTM_HeLa_A485_30min_R1 4 GTYVPSSPTR 10 0 Q9Y4P8-4;Q9Y4P8 Q9Y4P8-4 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 1 0 GTYVPS(0.002)S(0.997)PTR;GTYVPS(0.001)S(0.999)PTR;GTYVPS(0.003)S(0.994)PT(0.003)R;GTYVPS(0.003)S(0.996)PT(0.001)R ;;; 213.58 1.17E-14 12474100000 4693490 7126360 7362940 4397860 6845940 6126810 6583440 7387430 5577510 5702880 TRUE FALSE FALSE 5737540.658 7959725.811 10086797.9 4638103.956 6164334.176 6447600.298 5176834.262 5575651.209 6696865.097 4281256.97 1.3401533 1.859203002 2.356036551 1.083350985 1.439842135 1.506006377 1.209185596 1.302339768 1.564228717 1 22.029603 -5.280407156 24.99944255 1.32384311 1.852538242 0.443105532 0.28228312 750.7462283 989478.3284 0.079316976 0.117852758 5.24E-06 5.280407156 0.528695132 GTYVPSS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 GTYVPSSPTR 10 0 Q9Y4P8-4;Q9Y4P8 Q9Y4P8-4 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 1 0 GTYVPS(0.002)S(0.998)PTR;GTYVPS(0.003)S(0.99)PT(0.007)R;GTYVPS(0.003)S(0.988)PT(0.009)R ;; 219.61 6.33E-17 7056100000 5429000 5749000 5385100 1481800 6418000 4551700 5303000 5553000 4703700 5302300 TRUE FALSE FALSE 5048455.135 5293428.303 7470354.938 3449705.286 5612994.595 3990157.532 3976133.311 4288703.121 5111420.503 3974569.568 1.270189149 1.331824292 1.879538101 0.867944372 1.412227035 1.003921925 1.000393437 1.079035867 1.286031208 1 21.9223672 -5.27815041 24.99893519 1.101843335 1.477647953 0.432423099 0.210134343 774.2769804 1158280.892 0.058187933 0.086569787 5.27E-06 5.27815041 0.375804618 GVAPADS(ph)PEAPR ddPTM_HeLa_A485_30min_R1 2 GVAPADSPEAPR 12 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 GVAPADS(1)PEAPR;GVAPADS(1)PEAPR ; 234.87 1.30E-27 1913190000 819070 1094130 1514090 873670 1516370 1260920 1339690 1523310 1221950 1211560 TRUE FALSE FALSE 1001269.296 1222078.986 2074214.898 921396.3799 1365394.879 1326939.821 1053454.287 1149715.834 1467184.157 909540.3891 1.100851933 1.34362256 2.28050884 1.013035145 1.501192135 1.458912476 1.158227056 1.26406243 1.613105008 1 19.79477818 -6.690204096 10.82635406 1.280967421 1.465391055 0.064269305 0.349668917 1.556415566 228.0669555 0.134143046 0.103821612 2.04E-07 6.690204096 0.184423634 GVAPADS(ph)PEAPR ddPTM_HeLa_A486_30min_R1 2 GVAPADSPEAPR 12 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 GVAPADS(1)PEAPR;GVAPADS(1)PEAPR ; 230.06 1.63E-23 2113720000 1472270 1938500 2074700 437550 2482900 1597040 1728890 1801500 1874990 1812520 TRUE FALSE FALSE 1369071.476 1784886.2 2878079.402 1018638.513 2171471.53 1400013.442 1296303.436 1391337.776 2037515.643 1358653.194 1.007668095 1.313717295 2.118332636 0.749741374 1.59825299 1.030442094 0.954109143 1.024056604 1.499658376 1 20.37374581 -6.287897466 24.59436889 1.09393525 1.363607182 0.109116534 0.365045604 1434.614408 1333554.422 0.127289998 0.112296385 5.15E-07 6.287897466 0.269671931 GVAPADS(ph)PEAPRR ddPTM_HeLa_A485_30min_R1 4 GVAPADSPEAPRR 13 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR ;;; 188.39 1.40E-17 2891160000 1430238 2003750 2166960 1388148 2231200 2176810 2466900 2697220 1723032 2129110 TRUE FALSE FALSE 1748389.509 2238071.132 2968608.679 1463979.01 2009053.894 2290784.406 1939826.662 2035722.566 2068828.718 1598362.06 1.093863244 1.400227888 1.857281746 0.915924525 1.256945434 1.433207446 1.213634076 1.273630435 1.294342983 1 20.60816281 -13.26064258 0.193454656 8.99E-10 1.369848126 0.13598173 0.231746686 206.6207052 2.628560205 80.39349097 0.62732539 5.49E-14 13.26064258 1.369848125 GVAPADS(ph)PEAPRR ddPTM_HeLa_A486_30min_R1 5 GVAPADSPEAPRR 13 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR ;;;; 233.02 9.59E-29 3634860000 2377370 2847250 3126480 939148 3736480 2719040 3002980 3107190 2712410 3079620 TRUE FALSE FALSE 2210728.64 2621623.54 4337136.786 2186384.006 3267815.837 2383592.49 2251602.642 2399750.666 2947523.883 2308463.107 0.957662539 1.135657543 1.878798397 0.94711672 1.415580707 1.032545195 0.975368692 1.039544734 1.27683387 1 21.13850125 -6.282191389 23.88930491 1.061736901 1.27589003 0.131594689 0.259021246 973.5477681 1120724.164 0.091428467 0.080740449 5.22E-07 6.282191389 0.214153128 GVDEATIIDILTKR ddPTM_HeLa_A485_30min_R1 2 GVDEATIIDILTKR 14 1 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 0 0 ; ; 239.87 6.86E-35 63772000 53888 103767 73448 48767 98667 116422 136298 195369 74185 72909 FALSE FALSE TRUE 65875.19969 115901.648 100619.4716 51431.01773 88843.36704 122517.6759 107176.8188 147454.4464 89073.24903 54734.12809 1.203548901 2.117538948 1.838331497 0.939651722 1.623180457 2.238414682 1.958135127 2.694012887 1.627380432 1 15.74015305 -6.143217513 6.721045357 2.011309795 1.553499135 0.093646297 0.50896092 0.478541282 24.66608789 0.164892252 0.165148926 7.19E-07 6.143217513 -0.45781066 GVDEATIIDILTKR ddPTM_HeLa_A486_30min_R1 1 GVDEATIIDILTKR 14 1 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 0 0 95.264 0.0025054 18684000 33001 31782 24479 17447 41609 32154 40434 45095 21562 44963 FALSE FALSE TRUE 30687.80032 29263.47857 33957.92437 40617.49772 36390.01123 28187.1664 30316.98553 34827.85292 23431.01152 33703.97214 0.9105099 0.868250141 1.007534786 1.205124949 1.079695031 0.836315859 0.899507791 1.033345648 0.695200299 1 15.04063101 -6.262672464 24.99376211 0.89537264 1.016347461 0.200678666 0.121003775 208.9557599 4235360.13 0.043887009 0.040839647 5.46E-07 6.262672464 0.120974821 GVDEVTIVNILTNR ddPTM_HeLa_A485_30min_R1 4 GVDEVTIVNILTNR 14 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9 P07355 ANXA2 Annexin A2;Annexin 0 0 ;;; ;;; 293.94 5.44E-65 142283000 129015 185192 144605 240087 214283 199486 247463 307312 170302 300143 FALSE FALSE TRUE 157713.9417 206848.5934 198100.407 253202.3449 192948.2321 209930.7785 194590.5085 231943.2502 204480.0493 225322.8738 0.699946432 0.918009743 0.879184628 1.123731207 0.856318885 0.931688714 0.863607432 1.029381732 0.907497964 1 17.78163425 -4.059680398 1.796679869 0.949691119 0.503702268 0.470693841 0.078857387 1.454904565 3.069620951 0.020721488 1.300367632 8.72E-05 4.059680398 -0.445988851 GVDFES(ph)S(ph)EDDDDDPFMNTSSLRR ddPTM_HeLa_A485_30min_R1 2 GVDFESSEDDDDDPFMNTSSLRR 23 1 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 2 0 GVDFES(1)S(1)EDDDDDPFMNTSSLRR;GVDFES(1)S(1)EDDDDDPFMNTSSLRR ; 127.24 1.45E-06 1029210000 305955 575126 488093 280358 676030 576151 681150 848052 432942 408647 TRUE FALSE FALSE 374013.6342 642381.9828 668658.9119 295673.2476 608722.0795 606317.3755 535616.738 640065.9173 519829.4882 306778.8235 1.219163794 2.093958036 2.179612349 0.963799405 1.98423761 1.976399051 1.74593778 2.08640841 1.694476438 1 18.22683937 GVDFES(ph)S(ph)EDDDDDPFMNTSSLRR ddPTM_HeLa_A486_30min_R1 5 GVDFESSEDDDDDPFMNTSSLRR 23 1 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 2 0 GVDFES(1)S(1)EDDDDDPFMNTSSLRR;GVDFES(1)S(1)EDDDDDPFMNTSSLRR;GVDFES(1)S(1)EDDDDDPFMNTSSLRR;GVDFES(1)S(1)EDDDDDPFMNTSSLRR;GVDFES(1)S(1)EDDDDDPFMNTSSLRR ;;;; 102.21 0.00025221 1847140000 692426 691018 678790 280870 987070 616302 833174 894432 531014 769277 TRUE FALSE FALSE 643890.5131 636259.217 941635.6666 653879.5544 863262.4765 540268.9253 624705.0528 690789.3589 577042.7211 576645.032 1.116615036 1.103381078 1.632955483 1.133937723 1.497043118 0.93691768 1.083344203 1.197945565 1.00068966 1 19.13732398 -6.273636288 24.90062947 1.058623823 1.295670651 0.353118934 0.170626159 906.1433738 1849934.109 0.059508567 0.052881021 5.33E-07 6.273636288 0.237046829 GVDLLLEGVQGES(ph)SPTRR ddPTM_HeLa_A485_30min_R1 2 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 GVDLLLEGVQGES(0.593)S(0.367)PT(0.04)RR;GVDLLLEGVQGES(0.482)S(0.482)PT(0.036)RR ; 100.47 0.00018791 180752000 72158 104207 110078 82955 113227 96263 105609 131558 99413 100139 TRUE FALSE FALSE 88209.29816 116393.1022 150800.4329 87486.6216 101953.7223 101303.1818 83044.7744 99293.19423 119364.2772 75176.19022 1.173367497 1.548270827 2.005960032 1.163754393 1.356196982 1.347543438 1.104668568 1.320806414 1.587793647 1 16.19798818 GVDLLLEGVQGES(ph)SPTRR ddPTM_HeLa_A486_30min_R1 1 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 GVDLLLEGVQGES(0.627)S(0.348)PT(0.025)RR 155.71 8.35E-09 53191000 28344 34401 31803 8725.8 39927 27376 32730 35382 33210 34566 TRUE FALSE FALSE 26357.23197 31674.93947 44117.97331 20314.10338 34918.98336 23998.62746 24540.60782 27326.29098 36088.66954 25910.44861 1.017243366 1.222477463 1.702709744 0.784012029 1.347679613 0.926214278 0.947131722 1.054643684 1.39282303 1 14.66124637 -5.279605762 24.99683966 1.068049296 1.304977022 0.191169179 0.234879798 1383.39602 1903542.284 0.065507349 0.097371454 5.25E-06 5.279605762 0.236927726 GVDLLLEGVQGESS(ph)PTRR ddPTM_HeLa_A486_30min_R1 2 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 GVDLLLEGVQGES(0.484)S(0.5)PT(0.016)RR;GVDLLLEGVQGES(0.051)S(0.948)PT(0.001)RR ; 156.05 7.67E-09 350945000 90086 113272 120762 35187 133588 89006 116680 120594 104863 116339 TRUE FALSE FALSE 83771.4366 104295.9142 167524.2805 81917.11425 116832.1474 78025.34467 87485.42988 93137.37875 113952.6093 87206.95716 0.960604972 1.195958644 1.920996741 0.939341503 1.339711316 0.894714679 1.00319324 1.068003996 1.306691725 1 16.41215561 GVDPNS(ph)R ddPTM_HeLa_A485_30min_R1 1 GVDPNSR 7 0 Q9UK76;J3KT51;Q9UK76-2;F2Z3M5 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GVDPNS(1)R 76.17 0.01595 306730000 65982 140840 194020 97396 125080 112340 130460 137400 151510 111230 TRUE FALSE FALSE 80659.46826 157310.0129 265796.0718 102716.4969 112626.596 118221.9487 102586.1552 103702.4346 181916.6673 83502.40804 0.965953799 1.88389792 3.183094693 1.230102212 1.348782612 1.415790891 1.22854128 1.241909509 2.178579894 1 16.34953018 GVDPNS(ph)R ddPTM_HeLa_A486_30min_R1 1 GVDPNSR 7 0 Q9UK76;J3KT51;Q9UK76-2;F2Z3M5 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GVDPNS(1)R 73.573 0.018136 289370000 102260 72348 85727 32819 99193 122130 89041 90568 102390 108520 TRUE FALSE FALSE 95092.10207 66614.88099 118922.7902 76404.29058 86751.289 107062.8423 66762.00002 69947.64349 111265.2476 81345.88565 1.168984778 0.818909038 1.46193983 0.939252059 1.066449622 1.316143299 0.8207176 0.859879303 1.367804244 1 16.31178176 -6.766843988 24.999212 1.000423637 1.118253921 0.062458457 0.217071947 428.2366363 1980797.008 0.086947614 0.06052895 1.71E-07 6.766843988 0.117830284 GVDPNS(ph)RNSSR ddPTM_HeLa_A486_30min_R1 2 GVDPNSRNSSR 11 1 Q9UK76;J3KT51;Q9UK76-2;F2Z3M5 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GVDPNS(0.5)RNS(0.5)SR;GVDPNS(0.498)RNS(0.498)S(0.004)R ; 62.89 0.011754 60694000 58975 46020 48911 21730 55304 45668 49747 56844 39351 46153 TRUE FALSE FALSE 54841.15705 42373.2076 67850.64908 50588.53817 48367.25663 40033.94648 37299.77443 43901.8621 42761.97636 34595.98839 1.585188329 1.224801185 1.961228808 1.462266018 1.398059685 1.157184643 1.078153166 1.268987074 1.23603858 1 15.07831714 -6.01672918 2.292947708 1.15947104 1.565450647 0.533192431 0.18218004 0.256150256 2.697831829 0.065235841 0.070503677 9.62E-07 6.01672918 0.405979607 GVDPNSRNS(ph)SR ddPTM_HeLa_A485_30min_R1 4 GVDPNSRNSSR 11 1 Q9UK76;J3KT51;Q9UK76-2;F2Z3M5 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GVDPNS(0.251)RNS(0.736)S(0.013)R;GVDPNS(0.293)RNS(0.702)S(0.005)R;GVDPNS(0.173)RNS(0.825)S(0.002)R;GVDPNS(0.11)RNS(0.887)S(0.003)R ;;; 78.401 0.0039772 2269749000 467507 700807 751833 456956 769816 544783 689942 940923 695520 580560 TRUE FALSE FALSE 571502.3193 782760.2824 1029967.313 481918.3492 693170.4161 573306.9955 542530.2554 710160.1589 835104.4843 435837.0764 1.311275131 1.795992872 2.363193424 1.105730502 1.590434714 1.315415843 1.244800603 1.629416581 1.916093259 1 18.73342941 -5.283662612 24.99812911 1.424405955 1.820737913 0.237932087 0.345193514 1206.249637 1356865.022 0.097975286 0.145445616 5.20E-06 5.283662612 0.396331958 GVDPNSRNS(ph)SR ddPTM_HeLa_A486_30min_R1 3 GVDPNSRNSSR 11 1 Q9UK76;J3KT51;Q9UK76-2;F2Z3M5 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GVDPNS(0.14)RNS(0.858)S(0.003)R;GVDPNS(0.246)RNS(0.753)S(0.001)R;GVDPNS(0.204)RNS(0.794)S(0.002)R ;; 68.972 0.0069178 2520400000 662410 550034 616390 377738 628660 651053 694100 802150 412786 759298 TRUE FALSE FALSE 615978.4797 506447.3027 855072.7155 879393.1538 549807.6008 570732.7003 520428.8386 619517.9558 448566.6228 569164.8386 1.082249707 0.889807782 1.502328776 1.54505882 0.965990103 1.002754671 0.914372785 1.088468426 0.788113728 1 19.11848701 -5.915073826 24.99999998 0.964023024 1.247599873 0.366406795 0.189845961 30.88234559 9086.70637 0.063638728 0.072159533 1.22E-06 5.915073826 0.283576849 GVEEEEEDGEMRE ddPTM_HeLa_A486_30min_R1 1 GVEEEEEDGEMRE 13 1 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F 0 0 104.82 0.00028827 0 120190 176460 216980 41208 261740 167930 147590 177960 176450 129540 FALSE FALSE TRUE 111765.3017 162476.6669 301000.4669 95934.30654 228910.1286 147212.504 110661.421 137442.3928 191744.8281 97102.34084 1.151005225 1.673251804 3.099827093 0.987971101 2.357411022 1.516055151 1.139637006 1.415438512 1.974667412 1 16.56721845 -6.502012679 24.12185975 1.404311337 1.872145795 0.121782094 0.603572793 1088.365948 1258190.096 0.210998304 0.183890987 3.15E-07 6.502012679 0.467834458 GVEFPMADLDALS(ph)PIHTPQR ddPTM_HeLa_A485_30min_R1 1 GVEFPMADLDALSPIHTPQR 20 0 Q6ZVM7-2;Q6ZVM7-5;Q6ZVM7 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 1 0 GVEFPMADLDALS(1)PIHTPQR 296.78 5.41E-87 41950000 34347 46065 50011 30495 59088 50594 44758 52755 36649 51203 TRUE FALSE FALSE 41987.37165 51451.90104 68512.15003 32160.86463 53204.99125 53243.02361 35195.08766 39816.75353 44004.11814 38439.03442 1.09231078 1.338532609 1.782358768 0.836672021 1.38413964 1.38512906 0.915608006 1.035841668 1.144776886 1 15.23028448 -6.757060013 24.99867552 1.027043435 1.309051455 0.259283091 0.230980893 159.1054391 908226.0126 0.090638406 0.067738587 1.75E-07 6.757060013 0.28200802 GVEFPMADLDALS(ph)PIHTPQR ddPTM_HeLa_A486_30min_R1 2 GVEFPMADLDALSPIHTPQR 20 0 Q6ZVM7-2;Q6ZVM7-5;Q6ZVM7 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 1 0 GVEFPMADLDALS(1)PIHTPQR;GVEFPMADLDALS(0.983)PIHT(0.017)PQR ; 146.25 1.44E-09 82695000 74962 85481 79601 25317.5 96747 72409 85372 91741 71072 76280 TRUE FALSE FALSE 69707.5509 78707.17424 110424.639 58940.41948 84612.08913 63475.91378 64011.02263 70853.57699 77232.57818 57178.9915 1.219111234 1.376505115 1.931209979 1.03080551 1.479775822 1.110126501 1.119484988 1.239154017 1.350715991 1 15.80319755 -5.312316789 24.99997109 1.205780441 1.49570195 0.311495842 0.216131924 446.8309963 219561.3625 0.060228609 0.089333561 4.87E-06 5.312316789 0.289921509 GVEICIAT(ph)PGR ddPTM_HeLa_A485_30min_R1 1 GVEICIATPGR 11 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;J3QSF1;J3KRZ1;P17844;P17844-2;J3KTA4 A0A1X7SBZ2;P17844 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 1 0 GVEICIAT(1)PGR 86.911 0.01564 144640000 79349 75186 80924 76184 113030 81591 105190 103350 71598 110920 TRUE FALSE FALSE 96999.9113 83978.34867 110861.1551 80345.73901 101776.3363 85862.9786 82715.29718 78003.25045 85967.06186 83269.68533 1.16488865 1.00851046 1.331350715 0.964885825 1.222249561 1.031143306 0.993342257 0.936754476 1.03239326 1 16.34550375 -6.467530581 6.216408728 0.988637468 1.132365028 0.339594048 0.098445821 0.253190112 21.67833142 0.033089338 0.028702111 3.41E-07 6.467530581 0.14372756 GVEICIATPGR ddPTM_HeLa_A485_30min_R1 2 GVEICIATPGR 11 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;J3QSF1;J3KRZ1;P17844;P17844-2;J3KTA4 A0A1X7SBZ2;P17844 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 140.16 0.0011615 142961000 148163 162758 180618 123521 221044 154335 166268 188199 147392 170805 FALSE FALSE TRUE 181121.3482 181791.1323 247436.1143 130268.6395 199036.0832 162415.742 130743.4835 142042.9002 176972.2224 128226.4569 1.412511525 1.417734972 1.929680662 1.015926374 1.552223215 1.266632065 1.019629542 1.107750331 1.380153727 1 16.96833444 -6.073984711 1.019557612 1.133698271 1.522578916 0.313318595 0.231342705 0.651169423 1.448386574 0.118706327 0.130029605 8.43E-07 6.073984711 0.388880645 GVEICIATPGR ddPTM_HeLa_A486_30min_R1 1 GVEICIATPGR 11 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;J3QSF1;J3KRZ1;P17844;P17844-2;J3KTA4 A0A1X7SBZ2;P17844 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 0 0 161.63 1.88E-05 47523000 17998 21501 21901 8894.3 28040 18043 22631 23046 19483 17411 FALSE FALSE TRUE 16736.43314 19797.18245 30381.65373 20706.37989 24522.96174 15817.03811 16968.48443 17798.92889 21171.80213 13051.17227 1.282370104 1.516889214 2.327886959 1.586553258 1.878985368 1.211924705 1.300150215 1.363780089 1.622214594 1 13.67189178 -6.264376697 24.97575584 1.322383688 1.733854677 0.337252719 0.292367297 328.2766266 2791296.115 0.103011258 0.094749377 5.44E-07 6.264376697 0.41147099 GVEPSPS(ph)PIKPGDIK ddPTM_HeLa_A485_30min_R1 4 GVEPSPSPIKPGDIK 15 1 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.005)PS(0.995)PIKPGDIK;GVEPS(0.004)PS(0.996)PIKPGDIK;GVEPS(0.005)PS(0.995)PIKPGDIK;GVEPS(0.002)PS(0.998)PIKPGDIK ;;; 172.84 1.13E-12 2927520000 3437550 1682600 1395390 7662800 3155420 2329570 3971310 2694860 2406760 9476400 TRUE FALSE FALSE 4202221.138 1879365.433 1911602.828 8081399.361 2841255.305 2451542.683 3122807.176 2033941.36 2889774.656 7114107.88 0.590688419 0.264174435 0.268705909 1.135968065 0.399383219 0.344602967 0.438959772 0.285902518 0.406203378 1 22.76225142 -10.33789062 3.514283812 1.002556618 0.457101851 0.304861437 0.244874492 220378334.3 321744182.1 5815179.969 0.062620483 4.59E-11 10.33789062 -0.545454767 GVEPSPS(ph)PIKPGDIK ddPTM_HeLa_A486_30min_R1 3 GVEPSPSPIKPGDIK 15 1 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.005)PS(0.995)PIKPGDIK;GVEPS(0.001)PS(0.999)PIKPGDIK;GVEPS(0.001)PS(0.999)PIKPGDIK ;; 180.05 4.98E-18 2916630000 1705140 2146750 810870 1205360 1591160 2707310 3267400 2849200 1654640 3301840 TRUE FALSE FALSE 1585618.491 1976633.712 1124860.58 2806138.996 1391581.876 2373309.618 2449861.961 2200499.358 1798065.527 2475037.773 0.640644159 0.798627695 0.454482187 1.13377623 0.562246723 0.958898343 0.98982811 0.889077081 0.726480035 1 21.23901911 -5.252706086 24.99182085 0.882540412 0.647989003 0.337742985 0.16775992 803.5613236 2299524.185 0.04393191 0.074618399 5.59E-06 5.252706086 -0.234551409 GVEPSPS(ph)PIKPGDIKR ddPTM_HeLa_A485_30min_R1 5 GVEPSPSPIKPGDIKR 16 2 Q92890;Q92890-1;Q92890-3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.096)PS(0.904)PIKPGDIKR;GVEPSPS(1)PIKPGDIKR;GVEPS(0.052)PS(0.948)PIKPGDIKR;GVEPS(0.184)PS(0.816)PIKPGDIKR;GVEPS(0.174)PS(0.826)PIKPGDIKR ;;;; 175.21 6.48E-13 4259490000 3235351 2342488 1841462 4925730 4098880 3265522 5170850 4955520 2574805 6272660 TRUE FALSE FALSE 3955043.668 2616421.595 2522695.423 5194810.157 3690781.115 3436499.682 4066055.656 3740170.95 3091544.746 4709001.302 0.83989012 0.555621336 0.535717716 1.103166006 0.783771522 0.729772506 0.863464543 0.79425991 0.656518134 1 22.16698969 -14 0.162417075 1.812770867 0.70664952 0.156222026 0.1566998 267.5349317 2.473886987 71.33754156 0.66900633 1.00E-14 14 -1.106121347 GVEPSPS(ph)PIKPGDIKR ddPTM_HeLa_A486_30min_R1 4 GVEPSPSPIKPGDIKR 16 2 Q92890;Q92890-1;Q92890-3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.001)PS(0.999)PIKPGDIKR;GVEPS(0.008)PS(0.992)PIKPGDIKR;GVEPS(0.019)PS(0.981)PIKPGDIKR;GVEPS(0.136)PS(0.864)PIKPGDIKR ;;; 212.83 3.03E-26 5594650000 5253410 5295790 2375100 3301660 5161410 6509470 8794030 8087950 3834220 9002690 TRUE FALSE FALSE 4885173.088 4876132.313 3294802.327 7686431.337 4514017.83 5706397.775 6593670.68 6246500.344 4166573.277 6748357.826 0.723905462 0.722565762 0.488237644 1.139007672 0.668906117 0.845597984 0.977077809 0.925632651 0.617420324 1 22.68610504 -5.243945763 24.99871028 0.872422614 0.652669262 0.323289932 0.156617444 1047.929171 1497508.692 0.041201984 0.071159519 5.70E-06 5.243945763 -0.219753352 GVFPEGEGDGS(ph)LPEDHFSELPQVDTILFK ddPTM_HeLa_A485_30min_R1 1 GVFPEGEGDGSLPEDHFSELPQVDTILFK 29 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;E9PDP5 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 GVFPEGEGDGS(0.999)LPEDHFS(0.001)ELPQVDTILFK 62.383 0.010404 27978000 16608 25662 25922 7998.5 34280 17721 21518 21228 23635 21903 TRUE FALSE FALSE 20302.3923 28662.94767 35511.6265 8435.437802 30866.96284 18648.84416 16920.50351 16021.79972 28378.32771 16442.98519 1.234714504 1.743171774 2.159682447 0.513011336 1.877211618 1.134151976 1.029040853 0.974385096 1.725862267 1 14.00518462 -5.243796428 24.99923058 1.198990733 1.715587711 0.252520037 0.419582822 1190.059131 1686255.514 0.110210151 0.190368986 5.70E-06 5.243796428 0.516596978 GVGDDQLGEES(ph)EERDDHLLPM ddPTM_HeLa_A485_30min_R1 3 GVGDDQLGEESEERDDHLLPM 21 1 H0YF90;F5GX30;P20645 H0YF90 M6PR Cation-dependent mannose-6-phosphate receptor 1 0 GVGDDQLGEES(1)EERDDHLLPM;GVGDDQLGEES(1)EERDDHLLPM;GVGDDQLGEES(1)EERDDHLLPM ;; 64.488 0.0058723 1750394000 666356 915688 896097 741110 1000751 1001977 1109119 1268941 911756 1117629 TRUE FALSE FALSE 814584.5933 1022769.746 1227600.57 781594.9627 901112.7166 1054438.966 872146.665 957731.2301 1094737.066 839024.6587 0.970870862 1.218998435 1.463128118 0.931551838 1.074000278 1.256743715 1.039476797 1.141481624 1.304773411 1 19.67835369 -5.285671099 24.99234509 1.114824424 1.217799229 0.098385226 0.152384725 1982.138301 2044352.597 0.043467177 0.064505019 5.18E-06 5.285671099 0.102974805 GVGDDQLGEES(ph)EERDDHLLPM ddPTM_HeLa_A486_30min_R1 3 GVGDDQLGEESEERDDHLLPM 21 1 H0YF90;F5GX30;P20645 H0YF90 M6PR Cation-dependent mannose-6-phosphate receptor 1 0 GVGDDQLGEES(1)EERDDHLLPM;GVGDDQLGEES(1)EERDDHLLPM;GVGDDQLGEES(1)EERDDHLLPM ;; 144.29 1.04E-09 1012494000 755850 802468 883776 283840 1224110 819289 868092 842897 902506 864548 TRUE FALSE FALSE 702868.8182 738877.5131 1225997.736 660793.8645 1070570.709 718213.4531 650886.1999 650987.7534 980735.9467 648059.5535 1.084574426 1.140138293 1.891797951 1.019649909 1.651963471 1.108252242 1.004361708 1.004518412 1.513342318 1 19.30576687 GVGQADWT(ph)PDLGLR ddPTM_HeLa_A485_30min_R1 3 GVGQADWTPDLGLR 14 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GVGQADWT(1)PDLGLR;GVGQADWT(1)PDLGLR;GVGQADWT(1)PDLGLR ;; 199.65 4.33E-21 327962000 435775 546912 592894 458280 694600 516111 591850 599998 460923 624320 TRUE FALSE FALSE 532711.6453 610868.6009 812230.163 483314.676 625443.1851 543133.7739 465396.4125 452847.5497 553426.0183 468688.5138 1.136600599 1.303357311 1.732984998 1.031206573 1.334453836 1.15883739 0.992975929 0.96620151 1.180797058 1 18.83826991 -6.283312311 1.327660347 1.029171946 1.341264149 0.332520543 0.179419937 0.503047069 1.79685575 0.087450557 0.077440582 5.21E-07 6.283312311 0.312092203 GVGQADWT(ph)PDLGLR ddPTM_HeLa_A486_30min_R1 2 GVGQADWTPDLGLR 14 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GVGQADWT(1)PDLGLR;GVGQADWT(1)PDLGLR ; 241.66 1.17E-34 285450000 429070 541410 516920 164748 627910 433430 491430 514210 431480 441410 TRUE FALSE FALSE 398994.4087 498506.6998 717085.2676 383541.6699 549151.6728 379957.8134 368469.0162 397135.6081 468881.0338 330878.0629 1.205865403 1.50661756 2.16721913 1.159163187 1.659679907 1.148331836 1.113609687 1.200247622 1.417081053 1 18.33594012 -6.268523615 24.34141004 1.18447922 1.55159086 0.302425377 0.275852058 513.6418141 1764865.986 0.096476182 0.086936643 5.39E-07 6.268523615 0.36711164 GVGS(ph)PEPGPTAPYLGR ddPTM_HeLa_A485_30min_R1 2 GVGSPEPGPTAPYLGR 16 0 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 GVGS(1)PEPGPTAPYLGR;GVGS(1)PEPGPTAPYLGR ; 200.63 3.85E-25 263540000 212260 241270 159773 207714 200525 200201 257550 259250 201144 402010 TRUE FALSE FALSE 259476.5047 269484.4277 218879.6814 219060.8899 180560.0269 210683.2148 202522.3385 195668.531 241511.7558 301796.3054 0.859773629 0.892934814 0.725256332 0.725856765 0.598284418 0.698097395 0.671056388 0.648346343 0.800247556 1 18.20321562 -4.788138005 6.850771046 0.711779312 0.876733406 0.207801839 0.105140019 0.184272603 30.43145696 0.025739264 0.056738937 1.63E-05 4.788138005 0.164954094 GVGS(ph)PPGR ddPTM_HeLa_A485_30min_R1 1 GVGSPPGR 8 0 O96028;O96028-5;O96028-3;O96028-6;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 GVGS(1)PPGR 68.371 0.012517 0 143860 147700 145890 144440 215070 183200 233080 288940 147800 201160 TRUE FALSE FALSE 175861.1607 164972.2302 199860.782 152330.3915 193656.8756 192792.0687 183280.5539 218077.012 177462.1043 151014.5141 1.164531514 1.092426322 1.323454128 1.008713582 1.282372604 1.276645956 1.213661846 1.444079818 1.17513277 1 17.20432769 GVGS(ph)PPGR ddPTM_HeLa_A486_30min_R1 2 GVGSPPGR 8 0 O96028;O96028-5;O96028-3;O96028-6;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 GVGS(1)PPGR;GVGS(1)PPGR ; 98.233 0.0025436 818310000 348380 402660 375800 135792 566820 354770 433550 461540 370980 375060 TRUE FALSE FALSE 323960.361 370751.7551 521319.8243 316130.6385 495724.1502 311002.0844 325071.2044 356457.4173 403136.8451 281142.5348 1.152299353 1.318732348 1.854290119 1.124449699 1.763248491 1.10620787 1.156250528 1.267888609 1.433923349 1 18.10094221 -6.32391344 24.99998167 1.20730935 1.440922797 0.209616683 0.241657929 393.3097578 157387.7096 0.083063785 0.073255381 4.74E-07 6.32391344 0.233613447 GVGSGPHPPDTQQPS(ph)PSK ddPTM_HeLa_A485_30min_R1 6 GVGSGPHPPDTQQPSPSK 18 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 GVGSGPHPPDT(0.001)QQPS(0.996)PS(0.003)K;GVGSGPHPPDTQQPS(0.999)PS(0.001)K;GVGSGPHPPDTQQPS(0.999)PS(0.001)K;GVGSGPHPPDT(0.002)QQPS(0.995)PS(0.003)K;GVGSGPHPPDTQQPS(0.888)PS(0.111)K;GVGSGPHPPDTQQPS(0.995)PS(0.005)K ;;;;; 141.69 4.49E-08 13816920000 2614210 3062470 2612410 3251650 3947350 3091910 4179880 4780970 2953720 4705850 TRUE FALSE FALSE 3195731.996 3420599.227 3578849.17 3429279.406 3554337.974 3253797.627 3286814.492 3608429.611 3546504.511 3532768.2 0.904597136 0.968248986 1.01304387 0.970706033 1.00610563 0.921033434 0.930379325 1.021417033 1.003888257 1 21.75236766 -4.286792582 4.015934304 0.980850292 0.899539337 0.343111227 0.032360399 0.262198275 8.754402618 0.008651777 0.059029034 5.17E-05 4.286792582 -0.081310955 GVGSGPHPPDTQQPS(ph)PSK ddPTM_HeLa_A486_30min_R1 5 GVGSGPHPPDTQQPSPSK 18 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 GVGSGPHPPDTQQPS(1)PSK;GVGSGPHPPDTQQPS(0.999)PS(0.001)K;GVGSGPHPPDT(0.002)QQPS(0.977)PS(0.021)K;GVGSGPHPPDTQQPS(1)PSK;GVGSGPHPPDTQQPS(0.998)PS(0.002)K ;;;; 154.84 1.25E-08 13465330000 2619390 2675970 1667220 771380 2736830 2667140 3403040 3411520 1936180 3019910 TRUE FALSE FALSE 2435784.288 2463916.391 2312812.234 1795811.623 2393551.261 2338095.384 2551563.398 2634791.369 2104009.641 2263704.88 1.076016715 1.088444176 1.021693355 0.793306424 1.057360119 1.03286228 1.127162565 1.163928829 0.929454038 1 21.11025445 -5.959173367 24.99999446 1.063419627 0.993699235 0.06945942 0.096830554 378.3659611 231688.9114 0.031510288 0.035729243 1.10E-06 5.959173367 -0.069720392 GVHIHQAGGS(ph)PPASSTSSSSLTNDVAK ddPTM_HeLa_A485_30min_R1 1 GVHIHQAGGSPPASSTSSSSLTNDVAK 27 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 GVHIHQAGGS(0.939)PPAS(0.006)S(0.006)T(0.017)S(0.01)S(0.01)S(0.004)S(0.005)LT(0.001)NDVAK 86.955 0.0028528 3680300000 129990 139630 142780 133710 177190 136240 190690 173170 136450 193510 TRUE FALSE FALSE 158905.827 155958.5139 195600.2636 141014.2387 159548.3414 143373.3157 149947.5237 130699.786 163834.2634 145271.5183 1.09385397 1.073565663 1.346446061 0.970694327 1.098276822 0.986933416 1.03218804 0.899693123 1.127779659 1 17.14839235 -5.328712059 24.9999957 1.015157749 1.161522244 0.376749562 0.090956202 187.5366269 69692.14943 0.024800286 0.036784773 4.69E-06 5.328712059 0.146364495 GVHIHQAGGS(ph)PPASSTSSSSLTNDVAK ddPTM_HeLa_A486_30min_R1 2 GVHIHQAGGSPPASSTSSSSLTNDVAK 27 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 GVHIHQAGGS(0.911)PPAS(0.035)S(0.035)T(0.02)SSSSLTNDVAK;GVHIHQAGGS(0.984)PPAS(0.003)ST(0.012)SSSSLTNDVAK ; 274.41 4.92E-77 2590900000 920990 861080 667460 92627 927060 757850 885110 926000 712140 752870 TRUE FALSE FALSE 856433.357 792844.8848 925918.3872 215640.3371 810779.4903 664354.1723 663646.1163 715170.0144 773868.8686 564346.4516 1.517566655 1.404890351 1.640691431 0.382106305 1.436669776 1.177209798 1.17595515 1.267253497 1.371265588 1 19.10622158 GVHIHQAGGS(ph)PPASSTSSSSLTNDVAKQPVSR ddPTM_HeLa_A485_30min_R1 1 GVHIHQAGGSPPASSTSSSSLTNDVAKQPVSR 32 1 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 GVHIHQAGGS(0.988)PPAS(0.007)S(0.002)TSSSSLTNDVAKQPVSR 78.618 0.00052271 197890000 50711 180860 89610 21107 111000 176950 184720 414450 68715 26441 TRUE FALSE FALSE 61991.487 202010.0037 122760.468 22260.02196 99948.45026 186214.8284 145253.063 312805.4877 82505.47021 19849.74531 3.123036897 10.17695696 6.184485799 1.121426075 5.035251017 9.381220034 7.317628549 15.75866505 4.156500193 1 14.27683288 -6.252789855 23.71815215 8.432395946 5.244796307 0.054396608 4.196405242 713.7772247 1957272.081 1.368364967 1.346070204 5.59E-07 6.252789855 -3.187599639 GVHIHQAGGSPPASST(ph)SSSSLTNDVAK ddPTM_HeLa_A485_30min_R1 2 GVHIHQAGGSPPASSTSSSSLTNDVAK 27 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 GVHIHQAGGS(0.155)PPAS(0.123)S(0.123)T(0.595)S(0.002)S(0.001)SSLTNDVAK;GVHIHQAGGS(0.073)PPAS(0.023)S(0.023)T(0.88)S(0.001)SSSLTNDVAK ; 306.08 1.09E-92 2982200000 436920 521370 520500 386150 581360 434770 588350 557410 555980 590230 TRUE FALSE FALSE 534111.3466 582339.6862 713054.6098 407244.3967 523477.7571 457533.8849 462644.2161 420704.3235 667560.0862 443096.5234 1.205406313 1.314250181 1.609253452 0.919087321 1.181407954 1.032582882 1.044116105 0.949464284 1.506579382 1 18.75726148 -5.270298216 24.99266681 1.087803547 1.370098009 0.340610952 0.182165587 707.3170321 1995491.146 0.049754513 0.075081052 5.37E-06 5.270298216 0.282294462 GVIDYDRDRFDR ddPTM_HeLa_A485_30min_R1 1 GVIDYDRDRFDR 12 2 H0YIQ2;P49750-3;P49750-1;P49750;F8VU51;H0YI23 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 110.8 0.00033279 128150000 45805 82140 91438 48764 112140 82701 96407 122900 75398 68421 FALSE FALSE TRUE 55994.16422 91745.55848 125264.7213 51427.85384 100974.9479 87031.09648 75808.85688 92758.5823 90529.68701 51364.9039 1.090124968 1.786152636 2.438722002 1.001225544 1.965835428 1.694368915 1.475888226 1.805874737 1.762481386 1 15.64849533 -10.10820477 4.080724178 0.999857894 1.683237912 0.206291754 0.392755643 158928711.4 228659705.2 307213.3317 0.094396971 7.79E-11 10.10820477 0.683380018 GVIS(ph)TPVIR ddPTM_HeLa_A485_30min_R1 4 GVISTPVIR 9 0 Q9NZB2;Q9NZB2-4;Q9NZB2-6;A0A494C0Y9;A0A0C4DG79 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 GVIS(0.5)T(0.5)PVIR;GVIS(0.5)T(0.5)PVIR;GVIS(0.889)T(0.111)PVIR;GVIS(0.5)T(0.5)PVIR ;;; 147.2 8.89E-05 421780000 1168150 1381670 1345160 1103870 1835090 1398910 1484550 1567120 1153820 1501180 TRUE FALSE FALSE 1428000.937 1543244.288 1842790.661 1164171.623 1652381.996 1472154.764 1167363.765 1182781.363 1385381.091 1126963.453 1.267122668 1.369382728 1.635182273 1.033016306 1.466225006 1.306302135 1.035848822 1.049529476 1.229304364 1 20.1040093 -6.68252246 5.28434937 1.083249453 1.355228433 0.423823909 0.153271479 0.203753576 9.8439781 0.05899827 0.044790739 2.08E-07 6.68252246 0.27197898 GVIS(ph)TPVIR ddPTM_HeLa_A486_30min_R1 2 GVISTPVIR 9 0 Q9NZB2;Q9NZB2-4;Q9NZB2-6;A0A494C0Y9;A0A0C4DG79 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 GVIS(0.5)T(0.5)PVIR;GVIS(0.5)T(0.5)PVIR ; 126.07 0.00028871 541220000 828740 931330 834830 278760 1146720 812470 934840 893530 731900 838090 TRUE FALSE FALSE 770649.6056 857528.019 1158098.534 648967.3678 1002887.685 712235.712 700933.1443 690092.7246 795341.6813 628226.8089 1.226706015 1.364997493 1.843440167 1.033014444 1.596378363 1.133723843 1.115732621 1.098477039 1.266010412 1 19.26092598 -6.294691128 20.82563385 1.128501935 1.413058814 0.324935962 0.209001989 106.4245704 66652.63429 0.071475622 0.063049231 5.07E-07 6.294691128 0.284556879 GVKPVFSIGDEEEYDT(ph)DEIDSSSMSDDDRK ddPTM_HeLa_A485_30min_R1 1 GVKPVFSIGDEEEYDTDEIDSSSMSDDDRK 30 2 Q9NUY8-2;Q9NUY8;E9PGE5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 1 0 GVKPVFSIGDEEEYDT(1)DEIDSSSMSDDDRK 187.09 7.60E-21 462290000 108360 91054 56765 221300 113200 116100 187990 158890 108590 251490 TRUE FALSE FALSE 132464.3082 101701.9732 77764.73569 233389.0586 101929.4105 122178.8165 147824.4008 119921.9784 130383.017 188798.1713 0.701618597 0.538680923 0.411893479 1.236182835 0.539885582 0.64713983 0.782975808 0.635186122 0.690594702 1 17.52648527 -14 0.341721161 4.405677281 0.676146626 0.168239359 0.208516792 755.1616522 6.35510189 1877.86384 0.167554859 1.00E-14 14 -3.729530654 GVKPVFSIGDEEEYDT(ph)DEIDSSSMSDDDRK ddPTM_HeLa_A486_30min_R1 1 GVKPVFSIGDEEEYDTDEIDSSSMSDDDRK 30 2 Q9NUY8-2;Q9NUY8;E9PGE5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 1 0 GVKPVFSIGDEEEYDT(0.999)DEIDSSSMSDDDRK 106.19 0.00016803 329600000 29352 29048 24357 22004 37287 44530 46746 41514 24496 57266 TRUE FALSE FALSE 27294.57637 26746.13069 33788.6827 51226.42402 32610.11677 39036.34135 35049.65637 32062.16844 26619.333 42926.22086 0.635848575 0.623072103 0.787133878 1.193359746 0.75967826 0.909382204 0.816509249 0.746913374 0.620118251 1 15.38957155 -4.856606211 4.723323227 0.858023526 0.630059051 0.28030447 0.147265714 0.268347855 10.10799104 0.040129675 0.08948725 1.39E-05 4.856606211 -0.227964474 GVLGKS(ph)PLSALAR ddPTM_HeLa_A485_30min_R1 1 GVLGKSPLSALAR 13 1 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 GVLGKS(0.966)PLS(0.034)ALAR 88.768 0.00083674 121280000 131190 158640 145140 168250 261040 198760 215920 246550 175070 243010 TRUE FALSE FALSE 160372.7629 177191.568 198833.3258 177441.0715 235049.941 209166.7663 169786.9281 186083.2259 210204.9432 182432.0793 0.879082032 0.971274179 1.089903303 0.97264183 1.288424393 1.146545975 0.930685704 1.020013732 1.152236734 1 17.47699991 -4.457028209 1.785143321 1.079399744 0.849746858 0.287768872 0.098780404 0.799659041 3.493161331 0.028766593 0.272910684 3.49E-05 4.457028209 -0.229652886 GVLGKS(ph)PLSALAR ddPTM_HeLa_A486_30min_R1 2 GVLGKSPLSALAR 13 1 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 GVLGKS(1)PLSALAR;GVLGKS(0.979)PLS(0.021)ALAR ; 170.16 2.19E-12 295390000 415380 477800 426390 244390 751580 543530 669380 717930 420440 483970 TRUE FALSE FALSE 386264.007 439937.3879 591499.6271 568952.2708 657309.8282 476474.7948 501894.044 554473.0113 456884.0777 362780.7619 1.064731231 1.21268114 1.630460292 1.568308826 1.811865174 1.313395981 1.38346378 1.528396954 1.259394449 1 18.46873843 -8.031178045 4.067689246 1.000421071 1.447730086 0.310755604 0.202922299 0.264147545 12.94787078 0.209291451 0.054960843 9.31E-09 8.031178045 0.447309015 GVLHTFS(ph)PSPK ddPTM_HeLa_A485_30min_R1 2 GVLHTFSPSPK 11 0 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 GVLHT(0.001)FS(0.998)PS(0.001)PK;GVLHT(0.011)FS(0.968)PS(0.02)PK ; 95.183 0.0011076 223280000 591810 664840 509680 671760 889890 759260 864150 997200 598960 886390 TRUE FALSE FALSE 723456.0928 742587.2547 698231.8416 708456.5478 801289.427 799013.6796 679517.293 752635.1365 719165.778 665429.2858 1.087202064 1.115952169 1.049295329 1.064660908 1.204169164 1.200749195 1.021171306 1.131052018 1.080754625 1 19.34392584 -8.457184441 1.229677244 0.999847125 1.110467262 0.25046541 0.056497389 2.82894886 5.970991992 0.057415013 0.017372366 3.49E-09 8.457184441 0.110620138 GVLHTFS(ph)PSPK ddPTM_HeLa_A486_30min_R1 1 GVLHTFSPSPK 11 0 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 GVLHTFS(0.916)PS(0.084)PK 95.273 0.0015036 102760000 14624 15023 9148.4 5391.6 14728 14203 17765 17735 11044 18769 TRUE FALSE FALSE 13598.93312 13832.52277 12690.90548 12551.91728 12880.67691 12450.77827 13320.0091 13697.12765 12001.30281 14069.12023 0.966580205 0.983183208 0.902039735 0.89216078 0.915528241 0.884972056 0.946754941 0.973559642 0.853024398 1 13.7802445 -9.937425127 13.88828052 0.999999449 0.925047301 0.239224423 0.040526834 0 0 0.040104279 0.009726716 1.15E-10 9.937425127 -0.074952148 GVLLMLFGGVPK ddPTM_HeLa_A485_30min_R1 5 GVLLMLFGGVPK 12 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ;;;; ;;;; 235.82 9.61E-29 209703600 283627 343071 285116 261965 369527 274111 427130 418985 202655 383081 FALSE FALSE TRUE 346718.8476 383190.1691 390592.2731 276275.4846 332735.5944 288463.0281 335870.1862 316228.2718 243325.9996 287585.9568 1.205618145 1.332436999 1.358175752 0.960670986 1.156995279 1.003049771 1.167894948 1.099595666 0.846098337 1 18.1336337 -5.25727979 24.98568335 1.047102108 1.302112979 0.606958092 0.097380142 244.0561849 1465982.909 0.026358331 0.043594752 5.53E-06 5.25727979 0.255010871 GVLLMLFGGVPK ddPTM_HeLa_A486_30min_R1 6 GVLLMLFGGVPK 12 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ;;;;; ;;;;; 235.82 9.61E-29 166345600 361092 333468.2 233929 147405.5 335242.1 278307.1 388583.2 350442.9 249815.3 415577.9 FALSE FALSE TRUE 335781.3155 307042.9654 324512.5736 343167.4535 293192.9098 243972.3996 291355.5733 270654.7018 271469.4913 311514.4889 1.077899512 0.985645857 1.041725458 1.101609927 0.941185467 0.783181548 0.93528739 0.868835035 0.87145061 1 18.24893974 -5.947755423 5.915360582 0.883639262 1.044938206 0.62111786 0.058804374 0.121614276 9.323917525 0.01765237 0.019959 1.13E-06 5.947755423 0.161298944 GVLRPGTALVLLEAQAATGFVIDPVR ddPTM_HeLa_A485_30min_R1 4 GVLRPGTALVLLEAQAATGFVIDPVR 26 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ;;; ;;; 175.9 2.49E-14 509129000 161729 167444.8 162634.2 156317.4 187152.4 182925.6 214783 245962.8 142871 210972 FALSE FALSE TRUE 197705.0581 187026.0128 222799.3584 164856.6237 168518.8499 192503.3016 168892.8574 185640.0376 171543.8992 158380.5631 1.248291168 1.180864679 1.406734223 1.040889239 1.064012191 1.215447766 1.066373639 1.172113762 1.083112068 1 17.27303577 -1 0.11827213 0.959681399 1.933425812 0.362180071 0.092626657 113.7114168 0.928992105 0.686482492 18.21106948 0.1 1 0.973744413 GVLRPGTALVLLEAQAATGFVIDPVR ddPTM_HeLa_A486_30min_R1 1 GVLRPGTALVLLEAQAATGFVIDPVR 26 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 134.31 5.33E-06 46325000 9107.8 9325.1 10604 7045.4 18245 14014 12450 12381 8675.1 9979.1 FALSE FALSE TRUE 8469.390253 8586.145115 14710.15278 16402.04725 15956.54197 12285.09516 9334.878317 9562.116575 9427.064653 7480.268407 1.132230796 1.147839175 1.9665274 2.192708385 2.133150992 1.642333469 1.247933605 1.278311961 1.260257539 1 12.86887432 -6.732643706 4.271402553 1.213627051 1.73745939 0.341608773 0.344068099 0.284856899 11.62285446 0.162785744 0.117852437 1.85E-07 6.732643706 0.523832339 GVMLAVDAVIAELK(ac)K ddPTM_HeLa_A485_30min_R1 2 GVMLAVDAVIAELKK 15 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; GVMLAVDAVIAELK(1)K;GVMLAVDAVIAELK(1)K 43.813 0.035098 19830700 10112.6 16072.7 14289.5 12410 18869.9 17082.3 22232.6 28272 11071.7 21938.3 FALSE TRUE FALSE 12362.11298 17952.26245 19575.78069 13087.92688 16991.1465 17976.70281 17482.42339 21338.24767 13293.68863 16469.48555 0.750607112 1.090031768 1.188609117 0.794677334 1.031674392 1.091515746 1.061503915 1.295623206 0.807170849 1 14.00750787 -5.992445029 24.97033677 1.069319932 0.973548053 0.062270907 0.163343633 535.6653754 1770439.461 0.049925044 0.056502868 1.02E-06 5.992445029 -0.09577188 GVMLAVDAVIAELKK ddPTM_HeLa_A485_30min_R1 4 GVMLAVDAVIAELKK 15 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 151.99 3.31E-07 231831800 104639 105733 66396.6 115402 106564 127209 156934 191817 79439 201262 FALSE FALSE TRUE 127915.5845 118097.5546 90959.46533 121706.119 95954.11399 133869.4665 123403.7689 144773.58 95381.67864 151091.0874 0.846612377 0.781631509 0.602017412 0.80551488 0.635074614 0.886018288 0.816750816 0.958187425 0.631285937 1 17.20505903 -6.283004685 24.74968753 0.853229109 0.733428666 0.226357377 0.114671465 1134.621138 1302157.371 0.038498488 0.033984763 5.21E-07 6.283004685 -0.119800443 GVMLAVDAVIAELKK ddPTM_HeLa_A486_30min_R1 6 GVMLAVDAVIAELKK 15 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;;;;; ;;;;; 169.04 2.14E-12 552954300 389323 395886 315755 181108.9 873123 379744 452541 441162 345183.7 448296 FALSE FALSE TRUE 362033.4682 364514.5516 438023.7922 421630.6719 763607.7718 332895.0462 339310.4553 340719.0431 375104.501 336039.7637 1.077353061 1.084736364 1.303487978 1.254704703 2.272373256 0.990641829 1.009733049 1.013924779 1.116250342 1 18.35827243 GVNTFS(ph)PEGR ddPTM_HeLa_A485_30min_R1 6 GVNTFSPEGR 10 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 GVNTFS(1)PEGR;GVNTFS(1)PEGR;GVNTFS(1)PEGR;GVNT(0.001)FS(0.999)PEGR;GVNTFS(1)PEGR;GVNTFS(1)PEGR ;;;;; 188.26 8.39E-10 3537790000 2471690 3487010 3381950 2343920 4082470 2929230 3549350 4164330 3079850 3039080 TRUE FALSE FALSE 3021508.913 3894785.487 4633074.04 2471962.414 3676004.952 3082599.953 2791002.377 3143021.538 3697947.645 2281493.286 1.324355821 1.707121169 2.030719997 1.083484413 1.6112276 1.351132599 1.223322634 1.377615949 1.620845289 1 21.12154698 -5.26934721 24.99663867 1.348591021 1.689371218 0.31228638 0.245256817 737.1331375 2330075.79 0.067568441 0.102242205 5.38E-06 5.26934721 0.340780197 GVNTFS(ph)PEGR ddPTM_HeLa_A486_30min_R1 6 GVNTFSPEGR 10 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 GVNTFS(1)PEGR;GVNTFS(1)PEGR;GVNTFS(1)PEGR;GVNTFS(1)PEGR;GVNT(0.001)FS(0.999)PEGR;GVNT(0.042)FS(0.958)PEGR ;;;;; 203.88 7.25E-14 3881850000 2823790 3413410 3260000 1099665 4042900 2994960 3409910 3666530 2636260 2906540 TRUE FALSE FALSE 2625856.903 3142918.96 4522359.306 2560075.694 3535801.783 2625472.286 2556714.452 2831741.159 2864773.139 2178723.466 1.205227256 1.442550654 2.075692201 1.175034709 1.622877726 1.205050722 1.173491952 1.299724909 1.314886072 1 21.05505166 -6.273760287 23.98973489 1.215792327 1.514301398 0.275802636 0.246588856 644.0057886 1253923.175 0.086521106 0.076903976 5.32E-07 6.273760287 0.298509071 GVPAGNS(ph)DTEGGQPGR ddPTM_HeLa_A485_30min_R1 4 GVPAGNSDTEGGQPGR 16 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 GVPAGNS(0.998)DT(0.002)EGGQPGR;GVPAGNS(0.987)DT(0.013)EGGQPGR;GVPAGNS(0.956)DT(0.044)EGGQPGR;GVPAGNS(0.996)DT(0.004)EGGQPGR ;;; 216.17 1.21E-33 5515680000 870067 1213307 1124950 1029547 1500866 1233187 1306152 1623552 1097368 1381461 TRUE FALSE FALSE 1063610.402 1355192.699 1541115.818 1085788.546 1351434.511 1297754.764 1027081.955 1225373.326 1317599.692 1037088.197 1.025573723 1.306728496 1.486002659 1.046958734 1.303104708 1.251344648 0.9903516 1.181551704 1.270479884 1 19.98410716 -6.645388415 20.0460008 1.124953709 1.245576729 0.148611967 0.145208377 4.603051346 778.1078564 0.055428517 0.042934566 2.26E-07 6.645388415 0.12062302 GVPAGNS(ph)DTEGGQPGR ddPTM_HeLa_A486_30min_R1 2 GVPAGNSDTEGGQPGR 16 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 GVPAGNS(0.85)DT(0.15)EGGQPGR;GVPAGNS(0.972)DT(0.028)EGGQPGR ; 185.2 8.98E-18 3285070000 62313 64966 68313 18481 82897 41586 63349 67563 56666 47127 TRUE FALSE FALSE 57945.18048 59817.85756 94765.62309 43024.70198 72499.28528 36455.54214 47498.41016 52180.37979 61577.85451 35326.09245 1.640294085 1.693305243 2.682595682 1.217929836 2.052287141 1.031972109 1.344570171 1.477105906 1.743126687 1 15.10844656 -6.252695009 24.96518759 1.350750039 1.85850371 0.310357002 0.39956589 857.8529495 2449173.193 0.13121466 0.12933123 5.59E-07 6.252695009 0.507753672 GVPGCCYSS(ph)LPR ddPTM_HeLa_A485_30min_R1 2 GVPGCCYSSLPR 12 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 GVPGCCYS(0.019)S(0.981)LPR;GVPGCCYS(0.158)S(0.842)LPR ; 115.33 0.00027334 889840000 1060730 1276250 1487390 1003100 1557610 1322800 1511400 1524580 1103570 1313320 TRUE FALSE FALSE 1296685.729 1425496.336 2037637.456 1057896.813 1402528.879 1392059.763 1188477.043 1150674.365 1325046.376 985933.4939 1.315185798 1.445834171 2.066708829 1.072990034 1.422539033 1.411920552 1.205433278 1.167091261 1.343951072 1 19.91113081 -6.92053574 0.391933785 1.030557254 1.570091391 0.270412568 0.239554091 1.659370204 0.640576685 0.282128191 0.304468032 1.20E-07 6.92053574 0.539534138 GVPGCCYSS(ph)LPR ddPTM_HeLa_A486_30min_R1 3 GVPGCCYSSLPR 12 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 GVPGCCYS(0.359)S(0.641)LPR;GVPGCCYS(0.053)S(0.947)LPR;GVPGCCYS(0.165)S(0.835)LPR ;; 138.99 6.59E-06 1001226000 1047540 1245450 1169100 388852 1527570 1040130 1209690 1244110 981950 1237160 TRUE FALSE FALSE 974112.8555 1146756.006 1621806.83 905267.1075 1335967.927 911809.3359 907012.7672 960853.3117 1067066.217 927367.0834 1.050406978 1.236571824 1.74882941 0.976169118 1.440603134 0.983223744 0.9780515 1.036108925 1.150640599 1 19.82278099 -6.275167525 24.8297381 1.028639656 1.295517321 0.291934235 0.203091289 952.3984619 1722573.124 0.070771379 0.062750673 5.31E-07 6.275167525 0.266877665 GVPLYR ddPTM_HeLa_A485_30min_R1 3 GVPLYR 6 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3 Alpha-enolase;Enolase;Beta-enolase 0 0 ;; ;; 142.14 0.0099819 377200000 342335 515860 539610 355762 589450 521020 551260 635300 474830 490026 FALSE FALSE TRUE 418486.2397 576185.3396 739234.194 375196.3772 530762.2883 548299.8015 433478.7976 479491.6789 570124.0256 367871.5365 1.137587984 1.566267793 2.009490055 1.019911409 1.442792485 1.490465413 1.178342858 1.303421525 1.549791079 1 18.48884253 -12.7024903 0.187213326 3.88E-16 1.503032977 0.168435459 0.266525958 141.5260228 2.136996284 55.16056789 0.799290982 1.98E-13 12.7024903 1.503032977 GVPLYR ddPTM_HeLa_A486_30min_R1 2 GVPLYR 6 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5;E5RI09;K7EPM1;K7EKN2;E5RGZ4;E5RG95;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO3 Alpha-enolase;Enolase;Beta-enolase 0 0 ; ; 136.94 0.013586 79989000 78561 93730 91193 29787 110361 80456 96226 99269 83454 92223 FALSE FALSE TRUE 73054.27959 86302.49344 126505.3718 69345.64135 96518.4943 70530.15674 72149.23703 76667.61573 90687.85991 69129.76053 1.056770326 1.248413025 1.829969768 1.003122835 1.396193095 1.020257501 1.043678388 1.10903922 1.311849762 1 16.07701931 -6.261467215 25 1.100449512 1.315828489 0.178554776 0.224666023 4.672545088 4194283.126 0.077176932 0.072422541 5.48E-07 6.261467215 0.215378977 GVQKPAGPST(ph)SPDGNSR ddPTM_HeLa_A485_30min_R1 3 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GVQKPAGPS(0.271)T(0.458)S(0.271)PDGNSR;GVQKPAGPS(0.216)T(0.461)S(0.323)PDGNSR;GVQKPAGPS(0.027)T(0.486)S(0.486)PDGNSR ;; 142.27 1.05E-07 1197490000 401920 478160 417880 453190 572810 496410 639920 664020 477310 661020 TRUE FALSE FALSE 491325.7174 534076.6526 572471.2014 477946.6222 515779.0251 522401.26 503195.8643 501168.0539 573101.7389 496239.8792 0.990097205 1.076246942 1.153617888 0.963136262 1.039374397 1.052719223 1.014017384 1.009931033 1.154888518 1 18.92067815 -4.244592748 23.07844881 1.050768471 0.990097063 0.087293574 0.059562531 3059.448097 4190988.123 0.014627865 0.351667003 5.69E-05 4.244592748 -0.060671408 GVQKPAGPST(ph)SPDGNSR ddPTM_HeLa_A486_30min_R1 1 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GVQKPAGPS(0.096)T(0.452)S(0.452)PDGNSR 121.21 4.79E-05 465010000 153690 154890 127200 62254 177800 146280 179180 183200 131360 182870 TRUE FALSE FALSE 142917.1247 142615.9523 176455.2465 144930.4581 155498.6661 128233.4609 134347.2688 141489.3592 142746.3906 137078.1617 1.042595866 1.040398781 1.287260088 1.057283351 1.13437957 0.935476952 0.980077841 1.032180162 1.041350342 1 17.06463922 -6.247409308 24.58112855 0.998719617 1.115038628 0.389016994 0.071745954 706.0923254 1237096.369 0.024363072 0.024235113 5.66E-07 6.247409308 0.116319011 GVQKPAGPSTS(ph)PDGNSR ddPTM_HeLa_A485_30min_R1 1 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GVQKPAGPS(0.053)T(0.152)S(0.795)PDGNSR 105.95 0.00010049 405550000 52840 75186 60687 66018 78916 79610 84844 111160 82959 82481 TRUE FALSE FALSE 64594.0757 83978.34867 83137.6467 69624.39617 71058.84595 83778.2565 66716.38629 83897.83571 99608.11035 61920.00465 1.043185899 1.356239379 1.342662152 1.124424918 1.147591095 1.353007917 1.077460938 1.354939105 1.608657992 1 15.91811796 -7.471629434 23.52981157 1.363485485 1.217501404 0.065132874 0.175799494 358.2774687 164494.3001 0.091128107 0.043775018 3.38E-08 7.471629434 -0.145984081 GVQKPAGPSTS(ph)PDGNSR ddPTM_HeLa_A486_30min_R1 1 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GVQKPAGPS(0.015)T(0.382)S(0.603)PDGNSR 152.64 1.78E-08 465520000 443880 464420 357200 173340 497930 447160 547490 548550 362130 533830 TRUE FALSE FALSE 412766.3042 427617.6678 495517.4061 403544.2801 435474.9764 391993.9456 410502.2112 423657.1398 393519.72 400155.4933 1.031514776 1.068628758 1.238312142 1.008468675 1.088264396 0.979604059 1.025856743 1.058731285 0.983417013 1 18.61020119 GVQYLNEIKDSVVAGFQWATK ddPTM_HeLa_A485_30min_R1 1 GVQYLNEIKDSVVAGFQWATK 21 1 P13639 P13639 EEF2 Elongation factor 2 0 0 78.413 0.0022448 1107300 2152.9 1868.3 1196.5 1842.4 2729.7 2060.3 2516.9 3725.7 2325 2876.5 FALSE FALSE TRUE 2631.805178 2086.781433 1639.135141 1943.045647 2457.921483 2168.174122 1979.143754 2811.966233 2791.606174 2159.441488 1.218743454 0.966352385 0.75905513 0.899790829 1.138220923 1.004043932 0.916507238 1.302172922 1.292744531 1 11.07644251 -7.259184142 24.9778024 1.223094049 0.979830954 0.312935052 0.142466985 217.5402794 2409392.076 0.072814806 0.039421373 5.51E-08 7.259184142 -0.243263095 GVS(ph)GDRDENSFSLNSSISSSAR ddPTM_HeLa_A486_30min_R1 1 GVSGDRDENSFSLNSSISSSAR 22 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 GVS(1)GDRDENSFSLNSSISSSAR 124.17 1.37E-06 400490000 39630 43537 38177 17099 46496 45060 52246 42565 34850 45497 TRUE FALSE FALSE 36852.14165 40086.96956 52960.15682 39807.33614 40664.03812 39500.95534 39173.4982 32873.87869 37870.82606 34104.25506 1.08057313 1.175424283 1.552890005 1.167224913 1.192345003 1.158241259 1.148639609 0.963923083 1.110442846 1 15.05766413 -6.700201348 1.066079725 1.022759519 1.254174865 0.34150032 0.122635197 0.611082431 1.39259509 0.087782925 0.052630349 1.99E-07 6.700201348 0.231415346 GVS(ph)MPNMLEPK ddPTM_HeLa_A485_30min_R1 3 GVSMPNMLEPK 11 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 GVS(1)MPNMLEPK;GVS(1)MPNMLEPK;GVS(1)MPNMLEPK ;; 150.12 6.54E-07 1339940000 1324020 1131350 979390 1531240 1503010 1437000 2177790 1930550 1071500 1988210 TRUE FALSE FALSE 1618543.681 1263651.541 1341707.117 1614887.764 1353365.047 1512239.098 1712487.376 1457079.586 1286540.222 1492585.837 1.084389012 0.846619008 0.898914544 1.081939627 0.906725103 1.013167257 1.147329241 0.976211585 0.861953926 1 20.50938247 -5.230667382 24.79728193 1.000225589 0.933638675 0.063698264 0.094035171 1616.369963 1302532.095 0.025772432 0.044633384 5.88E-06 5.230667382 -0.066586914 GVS(ph)MPNMLEPK ddPTM_HeLa_A486_30min_R1 3 GVSMPNMLEPK 11 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 GVS(1)MPNMLEPK;GVS(1)MPNMLEPK;GVS(1)MPNMLEPK ;; 174.95 1.50E-08 1774542000 1562580 1922730 1287330 920500 2151030 2053000 2646690 2580440 1693980 2673540 TRUE FALSE FALSE 1453051.211 1770365.872 1785818.652 2142970.519 1881227.76 1799721.733 1984460.168 1992930.143 1840815.55 2004068.182 0.725050786 0.883386048 0.891096754 1.069310185 0.93870447 0.898034183 0.990215895 0.994442285 0.918539382 1 20.93450016 -4.249600638 1.395689176 0.967306406 0.622607676 0.690829113 0.049420465 0.740865092 1.269939538 0.014426101 0.362553915 5.63E-05 4.249600638 -0.34469873 GVS(ph)PTPSKIPVR ddPTM_HeLa_A485_30min_R1 2 GVSPTPSKIPVR 12 1 F8W130;Q12815;F8W052;F8VXF3;B7Z5Q9;F8W1E3;Q12815-3;Q12815-2;F8VXV6;F8VR46;F8VVX4;F8VVT5;F8VVS4 F8W130 TROAP Tastin 1 0 GVS(0.981)PT(0.019)PSKIPVR;GVS(0.591)PT(0.409)PSKIPVR ; 129.38 1.54E-05 946220000 811550 1137560 906360 729510 1337290 1168130 1289360 1562450 919000 1075400 TRUE FALSE FALSE 992076.4977 1270587.747 1241660.281 769361.2841 1204144.712 1229291.481 1013877.703 1179256.688 1103434.87 807322.5713 1.228847716 1.573829089 1.537997729 0.952978786 1.491528609 1.522676962 1.255852046 1.460700753 1.366783129 1 19.6227857 -8.067598741 20.28981874 0.999999999 1.382361921 0.28368049 0.179601243 4600.550307 1380860.076 0.172085547 0.044432297 8.56E-09 8.067598741 0.382361922 GVS(ph)PTPSKIPVR ddPTM_HeLa_A486_30min_R1 2 GVSPTPSKIPVR 12 1 F8W130;Q12815;F8W052;F8VXF3;B7Z5Q9;F8W1E3;Q12815-3;Q12815-2;F8VXV6;F8VR46;F8VVX4;F8VVT5;F8VVS4 F8W130 TROAP Tastin 1 0 GVS(0.981)PT(0.019)PSKIPVR;GVS(0.5)PT(0.5)PSKIPVR ; 119.96 6.60E-05 807440000 423756 368763 329044 128307.3 459730 344332 414150 409136 280381 425304 TRUE FALSE FALSE 394052.8927 339540.8769 456458.6489 298705.8787 402066.3766 301851.8188 310525.2896 315984.6642 304684.6508 318805.1101 1.236030666 1.06504214 1.431779587 0.936954488 1.261166662 0.946822398 0.974028583 0.991153072 0.955708178 1 18.28231523 -6.27109026 24.92830958 0.973019886 1.179260936 0.433370863 0.121449224 639.826601 1652673.83 0.040124051 0.035840807 5.36E-07 6.27109026 0.20624105 VAS(ph)FSIPGSSSR ddPTM_HeLa_A485_30min_R1 1 VASFSIPGSSSR 12 0 Q14573 Q14573 ITPR3 "Inositol 1,4,5-trisphosphate receptor type 3" 1 0 VAS(0.967)FS(0.033)IPGSSSR 156.08 5.12E-08 172190000 54176 58052 48378 74478 49290 74577 89764 120760 77052 181820 TRUE FALSE FALSE 66227.2643 64840.67641 66275.03538 78546.54455 44382.51453 78481.7364 70585.1881 91143.42066 92515.62964 136495.6201 0.485196992 0.475038513 0.485546974 0.575451025 0.32515706 0.574976225 0.517124198 0.667738793 0.677791929 1 17.05849513 -8.111534333 0.707668442 1.001801034 0.474763353 0.845862096 0.067031422 0.29704036 0.332692353 0.064555457 0.024940456 7.74E-09 8.111534333 -0.52703768 GVS(ph)QEKEAQISSAIVSSVQSK ddPTM_HeLa_A486_30min_R1 2 GVSQEKEAQISSAIVSSVQSK 21 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 GVS(1)QEKEAQISSAIVSSVQSK;GVS(1)QEKEAQISSAIVSSVQSK ; 267.38 1.02E-59 634830000 510790 533690 407800 490120 1047870 778510 1196220 1263760 509660 857020 TRUE FALSE FALSE 474986.2587 491398.4607 565711.0813 1141024.129 916436.3736 682465.3515 896913.1037 976029.4357 553837.7392 642416.6137 0.739374183 0.764921782 0.880598461 1.776143557 1.426545257 1.062340757 1.396154901 1.519309144 0.862116152 1 19.29314968 -5.027751342 21.37717527 1.314958906 0.769800412 0.449669077 0.253480919 94.69383086 72944.54092 0.067893216 0.118235059 9.38E-06 5.027751342 -0.545158494 GVS(ph)S(ph)ESSGDREK ddPTM_HeLa_A486_30min_R1 1 GVSSESSGDREK 12 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 GVS(0.933)S(0.612)ES(0.441)S(0.014)GDREK 46.964 0.0093011 0 353230 374670 212000 219060 402490 415350 497410 475820 307710 566520 TRUE FALSE FALSE 328470.4011 344979.7847 294092.0776 509982.7507 352005.9511 364108.34 372952.7569 367486.1731 334382.5506 424659.7046 0.773490862 0.812367599 0.692535869 1.200920985 0.828913003 0.857412031 0.8782391 0.865366243 0.78741295 1 18.69594769 GVS(ph)SESSGDR ddPTM_HeLa_A485_30min_R1 1 GVSSESSGDR 10 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 GVS(0.879)S(0.115)ES(0.006)SGDR 103.63 0.0006795 0 196690 251850 240690 182430 212170 205730 229600 211710 223150 219950 TRUE FALSE FALSE 240443.0119 281301.6667 329731.2469 192395.689 191045.6098 216501.7047 180544.0843 159787.7906 267934.1581 165120.5129 1.456166819 1.703614298 1.996912686 1.165183451 1.157007125 1.311173887 1.093407967 0.967704059 1.622658224 1 17.33315983 -5.280123606 24.69028357 1.186695674 1.717369563 0.570685501 0.210945029 467.9980789 618435.2338 0.058125112 0.086392088 5.25E-06 5.280123606 0.530673889 GVS(ph)SESSGDREK ddPTM_HeLa_A486_30min_R1 1 GVSSESSGDREK 12 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 GVS(0.991)S(0.009)ESSGDREK 171.76 5.80E-11 445310000 243190 245940 211220 151770 344860 329310 348070 361310 246840 407820 TRUE FALSE FALSE 226143.6368 226450.8187 293010.0407 353328.23 301604.4431 288683.0804 260979.2045 279047.6003 268236.2899 305699.2175 0.739758638 0.740763488 0.958491301 1.155803515 0.986605218 0.944336995 0.853712373 0.912817516 0.877451673 1 18.22175333 -4.762381583 8.959379841 0.961581097 0.739740167 0.560518135 0.078240439 0.07673422 74.97949743 0.022763597 0.052999815 1.73E-05 4.762381583 -0.22184093 GVSAVAGPHDIGAS(ph)PGDKK ddPTM_HeLa_A485_30min_R1 1 GVSAVAGPHDIGASPGDKK 19 1 Q8IYB7;Q8IYB7-4;Q8IYB7-5;Q8IYB7-3;C9JGP4;Q8IYB7-2 Q8IYB7;Q8IYB7-2 DIS3L2 DIS3-like exonuclease 2 1 0 GVSAVAGPHDIGAS(1)PGDKK 169.05 1.19E-12 476170000 404440 319430 177560 653000 427640 404200 646380 613740 305520 841500 TRUE FALSE FALSE 494406.2827 356784.5598 243246.8329 688671.7365 385062.6601 425363.287 508275.6326 463219.3027 366835.0616 631729.5367 0.782623344 0.564774226 0.38504901 1.090136991 0.609537211 0.673331327 0.804577914 0.73325573 0.580683727 1 19.2689475 -11.28938428 2.253981958 2.382713812 0.692134439 0.215853932 0.176365527 8402453.417 1279470.372 59167718.33 0.045261391 5.14E-12 11.28938428 -1.690579373 GVSAVAGPHDIGAS(ph)PGDKK ddPTM_HeLa_A486_30min_R1 2 GVSAVAGPHDIGASPGDKK 19 1 Q8IYB7;Q8IYB7-4;Q8IYB7-5;Q8IYB7-3;C9JGP4;Q8IYB7-2 Q8IYB7;Q8IYB7-2 DIS3L2 DIS3-like exonuclease 2 1 0 GVSAVAGPHDIGAS(1)PGDKK;GVSAVAGPHDIGAS(1)PGDKK ; 205.43 9.46E-26 1285610000 1338130 1136210 535440 578270 1006670 1453510 1996460 1802670 870080 2397200 TRUE FALSE FALSE 1244333.997 1046172.582 742776.7076 1346241.784 880404.0618 1274190.714 1496924.592 1392241.393 945499.235 1796925.517 0.692479452 0.582201417 0.413359764 0.749191756 0.489950225 0.709094897 0.833047657 0.774790819 0.526176086 1 20.77709918 -6.469411855 6.616803734 0.765823899 0.585473195 0.309784882 0.139254364 0.30798201 30.72909644 0.048190694 0.041887155 3.39E-07 6.469411855 -0.180350704 GVSDSLLFDTS(ph)DDEELR ddPTM_HeLa_A486_30min_R1 1 GVSDSLLFDTSDDEELR 17 0 F8W6C0;G3V0F5;Q9UHY8;Q9UHY8-2;F8WB37 F8W6C0 FEZ2 Fasciculation and elongation protein zeta-2 1 0 GVSDSLLFDT(0.121)S(0.879)DDEELR 138.91 3.03E-06 37194000 64299 68701 45456 16642 50110 52473 49690 48873 55894 64547 TRUE FALSE FALSE 59791.97214 63256.88256 63057.78055 38743.41704 43824.73654 45999.41477 37257.03643 37745.68479 60738.93692 48384.01107 1.235779565 1.30739228 1.303277243 0.80074835 0.905768984 0.9507152 0.770027859 0.780127235 1.255351418 1 15.56224275 -5.253064422 24.91738639 0.908119016 1.284673989 0.597584208 0.134560331 386.6868027 1150477.483 0.036183491 0.061345057 5.58E-06 5.253064422 0.376554973 GVSMS(ph)LPS(ph)SPLLPR ddPTM_HeLa_A485_30min_R1 2 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 2 0 GVS(0.106)MS(0.894)LPS(0.564)S(0.436)PLLPR;GVS(0.397)MS(0.602)LPS(0.552)S(0.448)PLLPR ; 97.86 0.0017688 385969000 129223 157925 186091 126547 191567 171434 204486 211245 151537 162958 TRUE FALSE FALSE 157968.2105 176392.955 254933.8048 133459.9422 172493.9168 180410.0192 160795.8956 159436.8325 181949.0859 122335.5696 1.291269669 1.441877906 2.083889466 1.090933263 1.410006243 1.474714343 1.314383839 1.303274534 1.48729504 1 16.90048441 -12.57853702 0.168574337 1.98E-14 1.558139235 0.229083059 0.242966075 115.8276163 1.686196368 41.06301225 0.965825696 2.64E-13 12.57853702 1.558139235 GVSMS(ph)LPS(ph)SPLLPR ddPTM_HeLa_A486_30min_R1 2 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 2 0 GVS(0.013)MS(0.982)LPS(0.729)S(0.275)PLLPR;GVS(0.009)MS(0.99)LPS(0.565)S(0.436)PLLPR ; 102.73 0.001053 345612000 217378 267650 280301 92196 302368 228693 274649 250286 240651 237540 TRUE FALSE FALSE 202140.9247 246440.4392 388841.0539 214636.9473 264442.186 200479.1828 205928.9153 193301.3415 261510.8224 178058.4379 1.135250467 1.384042465 2.183783361 1.205429801 1.485142682 1.125917902 1.156524328 1.085606185 1.468679752 1 17.44199128 -6.011828433 1.865760446 1.172956723 1.531014294 0.212785586 0.290023891 0.541598621 3.798480806 0.111051591 0.121183648 9.73E-07 6.011828433 0.358057571 GVSMS(ph)LPSS(ph)PLLPR ddPTM_HeLa_A485_30min_R1 4 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 2 0 GVSMS(0.998)LPS(0.142)S(0.86)PLLPR;GVSMS(1)LPS(0.154)S(0.846)PLLPR;GVSMS(1)LPS(0.001)S(0.999)PLLPR;GVS(0.001)MS(0.995)LPS(0.202)S(0.802)PLLPR ;;; 203.76 1.38E-21 659289000 556945 758551 764663 549689 838893 726487 862740 896920 638569 708252 TRUE FALSE FALSE 680835.4938 847256.9409 1047543.664 579717.1182 755369.8674 764524.736 678408.5511 676948.9637 766723.941 531697.8108 1.280493318 1.593493379 1.970186152 1.090313156 1.42067515 1.43789333 1.275928803 1.273183658 1.442029524 1 19.020247 -12.26876342 0.100337465 2.70E-05 1.766752409 0.280325107 0.218467415 153.8010415 1.545562197 37.09132508 4.250696786 5.39E-13 12.26876342 1.766725372 GVSMS(ph)LPSS(ph)PLLPR ddPTM_HeLa_A486_30min_R1 3 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 2 0 GVSMS(1)LPS(0.274)S(0.726)PLLPR;GVSMS(1)LPS(0.014)S(0.986)PLLPR;GVSMS(0.998)LPS(0.037)S(0.966)PLLPR ;; 218.79 2.49E-27 566150000 708860 819280 810030 241312 925150 697500 820670 794000 695280 766050 TRUE FALSE FALSE 659172.5746 754357.269 1123695.309 561786.5312 809109.0603 611449.5417 615329.6858 613223.5329 755547.4302 574226.0939 1.147932115 1.313693817 1.956886532 0.978336821 1.409042656 1.064823679 1.07158085 1.067913039 1.315766452 1 19.13125937 GVSMSLPS(ph)SPLLPR ddPTM_HeLa_A485_30min_R1 1 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GVSMS(0.002)LPS(0.774)S(0.223)PLLPR 194.7 3.51E-18 450890000 269360 460400 483700 333580 479260 430220 442980 512050 437930 483040 TRUE FALSE FALSE 329278.2027 514239.7751 662640.7584 351802.6307 431543.1916 452745.654 348333.7042 386468.9346 525818.5341 362627.0177 0.908035493 1.418095591 1.82733422 0.970150081 1.190046992 1.248516056 0.960583981 1.065747768 1.450025807 1 18.46812689 GVSMSLPS(ph)SPLLPR ddPTM_HeLa_A486_30min_R1 2 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GVSMS(0.001)LPS(0.499)S(0.499)PLLPR;GVSMSLPS(0.5)S(0.5)PLLPR ; 163.99 6.80E-12 3237000000 1323260 1237030 1172130 460380 1597230 1202940 1214530 1299060 1229470 1387080 TRUE FALSE FALSE 1230506.307 1139003.238 1626010.127 1071787.906 1396890.52 1054533.493 910641.748 1003292.396 1336041.45 1039746.14 1.183468022 1.095462819 1.563853007 1.030816913 1.343491903 1.014222081 0.875830853 0.964939766 1.284968896 1 19.9877999 -6.27939457 23.18457496 1.016290899 1.241189475 0.293013242 0.16680099 409.4331165 528676.2407 0.057823783 0.051133296 5.26E-07 6.27939457 0.224898576 GVSMSLPSS(ph)PLLPR ddPTM_HeLa_A485_30min_R1 3 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GVSMSLPS(0.25)S(0.75)PLLPR;GVSMSLPS(0.339)S(0.661)PLLPR;GVSMSLPS(0.019)S(0.981)PLLPR ;; 251.84 1.38E-36 3206550000 2174000 3629230 3659330 2328250 3494130 3300520 3218870 3936430 3408240 3673750 TRUE FALSE FALSE 2657598.8 4053636.878 5013068.444 2455436.402 3146242.149 3473330.124 2531132.129 2971014.37 4092242.506 2757951.735 0.963613237 1.469799789 1.817678091 0.890311593 1.140789416 1.259387566 0.917757949 1.077253939 1.483797723 1 21.39516578 -5.283397349 24.96416205 1.112628495 1.422307452 0.238971892 0.251079219 1103.061549 1254075.483 0.071188005 0.105690432 5.21E-06 5.283397349 0.309678958 GVSMSLPSS(ph)PLLPR ddPTM_HeLa_A486_30min_R1 2 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GVSMSLPS(0.047)S(0.953)PLLPR;GVSMSLPS(0.003)S(0.997)PLLPR ; 328.29 3.83E-81 631870000 1188190 1133740 1072920 306720 1359790 976290 1062660 1064260 1027610 1146300 TRUE FALSE FALSE 1104904.017 1043898.313 1488383.358 714059.6608 1189232.459 855845.266 796771.2283 821951.2306 1116684.062 859259.0188 1.285880035 1.214881998 1.732170772 0.831017941 1.384020921 0.996027097 0.92727712 0.956581441 1.299589574 1 19.71273356 -5.273618005 24.9986471 1.060310379 1.391368066 0.391051403 0.202303474 787.6516515 1616783.687 0.055900516 0.083620725 5.33E-06 5.273618005 0.331057687 GVSPT(ph)PSKIPVR ddPTM_HeLa_A486_30min_R1 1 GVSPTPSKIPVR 12 1 F8W130;Q12815;F8W052;F8VXF3;B7Z5Q9;F8W1E3;Q12815-3;Q12815-2;F8VXV6;F8VR46;F8VVX4;F8VVT5;F8VVS4 F8W130 TROAP Tastin 1 0 GVS(0.324)PT(0.676)PSKIPVR 116.79 0.00028329 0 620360 594090 469990 212250 743180 560330 638960 631730 445860 656620 TRUE FALSE FALSE 576875.9675 547012.1448 651982.7148 494128.7265 649963.4345 491202.1816 479085.4498 487898.8696 484507.5038 492198.0781 1.172040268 1.111365869 1.324634824 1.003922503 1.320532248 0.997976635 0.973359042 0.991265288 0.984375042 1 18.9088795 -6.374365872 8.63107814 0.986613762 1.179676668 0.55770967 0.087683519 0.236976433 16.5802849 0.028708681 0.025289461 4.22E-07 6.374365872 0.193062906 GVT(ph)PAGFPK ddPTM_HeLa_A485_30min_R1 2 GVTPAGFPK 9 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 GVT(1)PAGFPK;GVT(1)PAGFPK ; 116.55 0.0030392 1069120000 1552250 1397060 1059430 1710000 2224200 1540470 2072810 2292750 1318000 2107960 TRUE FALSE FALSE 1897542.657 1560434.014 1451357.244 1803412.97 2002750.838 1621126.627 1629937.21 1730449.468 1582510.511 1582484.366 1.199090934 0.986065991 0.91713844 1.139608712 1.265573854 1.024418732 1.029986296 1.093501778 1.000016521 1 20.59375982 -7.761399119 1.236416033 0.995387873 1.081141998 0.090950854 0.097232447 1.326709363 4.156897479 0.097927907 0.031528609 1.73E-08 7.761399119 0.085754126 GVT(ph)PAGFPK ddPTM_HeLa_A486_30min_R1 4 GVTPAGFPK 9 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 GVT(1)PAGFPK;GVT(1)PAGFPK;GVT(1)PAGFPK;GVT(1)PAGFPK ;;; 108.47 0.0049118 1986050000 2453710 2749740 2076240 1121630 3215850 2845970 3646340 3266320 1962390 2916260 TRUE FALSE FALSE 2281717.6 2531840.588 2880215.732 2611211.324 2812488.106 2494863.157 2733987.165 2522650.239 2132491.545 2186009.514 1.043782099 1.158201998 1.317567793 1.194510503 1.286585483 1.141286504 1.25067487 1.153997832 0.975517961 1 21.05986825 -7.681107126 4.078767097 0.985621592 1.202835362 0.558803655 0.073722405 0.156461564 4.736151358 0.059497871 0.019277023 2.08E-08 7.681107126 0.21721377 GVTDTREPS(ph)PGSHSALPGKK ddPTM_HeLa_A485_30min_R1 2 GVTDTREPSPGSHSALPGKK 20 2 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 0 GVTDT(0.001)REPS(0.499)PGS(0.499)HSALPGKK;GVTDT(0.003)REPS(0.972)PGS(0.025)HSALPGKK ; 171.72 5.12E-14 1011820000 1826130 2094640 1609210 2101680 2695500 2741580 3445200 4289600 2179130 3038010 TRUE FALSE FALSE 2232346.318 2339589.927 2204523.744 2216489.457 2427126.556 2885124.89 2709104.875 3237568.874 2616461.403 2280690.017 0.978803038 1.025825478 0.966603847 0.971850378 1.06420712 1.265022808 1.187844404 1.419556735 1.147223596 1 21.12103894 -6.099674791 3.515049504 1.22891924 0.988809481 0.505458351 0.100666472 0.180255309 4.140608126 0.032876705 0.03352969 7.95E-07 6.099674791 -0.240109759 GVTDTREPS(ph)PGSHSALPGKK ddPTM_HeLa_A486_30min_R1 2 GVTDTREPSPGSHSALPGKK 20 2 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 0 GVTDT(0.004)REPS(0.975)PGS(0.02)HSALPGKK;GVTDTREPS(0.997)PGS(0.003)HSALPGKK ; 160.12 1.40E-13 1753320000 1776780 1741270 1042940 655250 1974810 1829060 2165800 2276510 1280070 2115610 TRUE FALSE FALSE 1652236.897 1603285.424 1446794.299 1525455.115 1727110.915 1603409.174 1623893.933 1758198.369 1391027.498 1585847.486 1.04186368 1.010995974 0.912316167 0.96191792 1.089077563 1.011074008 1.023991239 1.108680617 0.877150868 1 20.5968226 -4.299427023 5.299827564 1.002703463 1.042591651 0.033539432 0.066973563 0.688874612 51.34449192 0.01675113 0.081792362 5.02E-05 4.299427023 0.039888188 GVTEAIQNFS(ph)FR ddPTM_HeLa_A485_30min_R1 3 GVTEAIQNFSFR 12 0 E3W994;J3KR49;O75122;A0A0U1RQI6;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 GVTEAIQNFS(1)FR;GVTEAIQNFS(1)FR;GVTEAIQNFS(1)FR ;; 182.02 7.44E-13 210133000 301763 349137 323521 290010 341879 305400 339021 329793 288516 354157 TRUE FALSE FALSE 368889.1383 389965.5351 443204.8807 305852.512 307840.3264 321390.2718 266586.3938 248910.7497 346418.5148 265872.1777 1.387467999 1.466740666 1.666984807 1.150374269 1.157850848 1.208814982 1.002686314 0.936204577 1.302951357 1 18.02037329 -5.360241097 6.054066089 1.10414867 1.501511867 0.69737959 0.12051818 0.129331254 6.564544606 0.034646139 0.051768194 4.36E-06 5.360241097 0.397363197 GVTEAIQNFS(ph)FR ddPTM_HeLa_A486_30min_R1 4 GVTEAIQNFSFR 12 0 E3W994;J3KR49;O75122;A0A0U1RQI6;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 GVTEAIQNFS(1)FR;GVTEAIQNFS(1)FR;GVTEAIQNFS(1)FR;GVTEAIQNFS(1)FR ;;; 167.89 1.88E-10 443855000 456900 450070 340988 288019 397753 417645 455610 415380 360370 559140 TRUE FALSE FALSE 424873.6694 414404.8141 473027.6856 670522.7877 347863.1098 366120.2062 341611.559 320807.0417 391607.1618 419127.7046 1.013709341 0.988731619 1.128600377 1.599805454 0.829969258 0.873529004 0.815053635 0.765415977 0.934338526 1 18.67703036 GVTIASGGVLPNIHPELLAK ddPTM_HeLa_A485_30min_R1 2 GVTIASGGVLPNIHPELLAK 20 0 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 0 0 ; ; 166.29 2.52E-15 55592000 40002 52728 49291 42306 62459 62767 67182 77230 50884 73916 FALSE FALSE TRUE 48900.30689 58894.08093 67525.79207 44617.06966 56240.36265 66053.38306 52828.01687 58289.22141 61095.95206 55490.10152 0.881243781 1.061343903 1.216897973 0.804054569 1.01352063 1.190363349 0.952025955 1.050443589 1.101024334 1 15.75994282 -6.020604836 24.94140832 1.060440285 0.999152361 0.06890026 0.117166641 2546.711565 3082701.108 0.038936109 0.039385468 9.54E-07 6.020604836 -0.061287924 GVTIIGPATVGGIKPGCFK ddPTM_HeLa_A485_30min_R1 1 GVTIIGPATVGGIKPGCFK 19 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 183.74 3.75E-18 25818000 51845 57003 53966 66778 77371 61651 80519 78676 66544 87854 FALSE FALSE TRUE 63377.74139 63669.00499 73930.26911 70425.91305 69667.67157 64878.95103 63315.45787 59380.58764 79898.77042 65953.61463 0.960944169 0.965360357 1.120943401 1.067809754 1.056313167 0.983705766 0.959999815 0.900338639 1.21143884 1 16.00916411 -6.262655873 24.57161133 1.001674229 1.037123669 0.011225067 0.086960583 372.7233473 7528505.503 0.030057698 0.028087461 5.46E-07 6.262655873 0.03544944 GVTIIGPATVGGIKPGCFK ddPTM_HeLa_A486_30min_R1 1 GVTIIGPATVGGIKPGCFK 19 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 163.35 1.45E-14 25359000 29681 40112 29828 15704 43115 38416 40309 39608 34155 43293 FALSE FALSE TRUE 27600.51517 36933.37903 41378.20042 36559.70564 37707.11467 33676.62451 30223.26185 30590.12304 37115.5829 32452.15101 0.85049879 1.138087242 1.275052628 1.126572646 1.161929595 1.037731659 0.931317676 0.942622356 1.143701781 1 14.98602649 -6.446427603 5.278796744 0.99755864 1.121205254 0.162021456 0.11304146 0.372346855 18.46378544 0.042024949 0.036433662 3.58E-07 6.446427603 0.123646614 GVTIPYRPKPS(ph)SSPVIFAGGQAYTIQGQYAIPQPDLTK ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK 38 2 Q15366-5;Q15366-8;Q15366-4;Q15366-7;F8VRH0 Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 GVT(0.002)IPY(0.007)RPKPS(0.357)S(0.357)S(0.278)PVIFAGGQAYTIQGQYAIPQPDLTK 169.98 3.96E-15 1999700000 277240 203300 180860 355480 301360 306130 434650 363230 234510 494600 TRUE FALSE FALSE 338911.0815 227074.1665 247767.6402 374898.9723 271355.5403 322158.4934 341783.4767 274147.273 281574.0059 371305.3224 0.912755786 0.611556454 0.667288146 1.009678423 0.730815111 0.867637693 0.920491725 0.738333809 0.758335496 1 18.50224647 -5.21594458 24.99971855 0.847215028 0.718635744 0.194270564 0.118580348 711.9577584 391224.7784 0.031234969 0.054100337 6.08E-06 5.21594458 -0.128579284 GVTIPYRPKPS(ph)SSPVIFAGGQAYTIQGQYAIPQPDLTK ddPTM_HeLa_A486_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK 38 2 Q15366-5;Q15366-8;Q15366-4;Q15366-7;F8VRH0 Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 GVTIPYRPKPS(0.333)S(0.333)S(0.333)PVIFAGGQAYTIQGQYAIPQPDLTK 203.44 5.85E-30 1752500000 974850 1047100 598380 501400 972320 1209300 1329300 1291300 922340 1493100 TRUE FALSE FALSE 906518.0491 964123.9825 830088.7612 1167284.539 850362.5591 1060108.861 996695.0801 997299.1789 1002289.174 1119218.042 0.809956609 0.861426413 0.741668496 1.0429465 0.759782748 0.947187073 0.890528068 0.891067819 0.895526284 1 20.09405969 -4.55358637 0.02436379 1.677301278 3.17E-08 0.256180257 0.079335164 1311.960163 5.494382525 160.2553817 221.0949177 2.80E-05 4.55358637 -1.677301246 GVTIPYRPKPS(ph)SSPVIFAGGQDR ddPTM_HeLa_A486_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 GVT(0.003)IPYRPKPS(0.407)S(0.407)S(0.183)PVIFAGGQDR 85 0.0013226 307320000 177950 180280 121720 181960 209170 199570 201760 194270 135470 223020 TRUE FALSE FALSE 165476.6239 165993.9562 168853.2438 423612.0757 182933.9482 174949.0825 151277.514 150038.9619 147212.6487 167174.3404 0.989844635 0.992939203 1.010042829 2.533953924 1.094270495 1.046506791 0.904908694 0.897499948 0.880593567 1 17.3509939 -5.987423166 24.99934834 0.951761593 1.388221585 0.19115265 0.423341721 417.5985004 830068.0469 0.139457117 0.158034988 1.03E-06 5.987423166 0.436459992 GVTIPYRPKPSS(ph)SPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 GVTIPYRPKPS(0.07)S(0.552)S(0.379)PVIFAGGQDR 155.45 2.75E-10 51477000000 8066200 7729200 7572000 9282200 9417300 8173400 9975500 8865500 7698100 10660000 TRUE FALSE FALSE 9860498.362 8633062.705 10373197.9 9789263.082 8479680.546 8601346.586 7844152.933 6691222.224 9243038.059 8002658.183 1.232152884 1.078774391 1.296219039 1.223251432 1.059607989 1.074811193 0.980193425 0.836124956 1.154995984 1 22.93204786 -6.080309961 1.731187823 0.987862625 1.203982562 0.504825252 0.091877326 0.293618848 1.762050564 0.03594109 0.037409556 8.31E-07 6.080309961 0.216119937 GVTIPYRPKPSS(ph)SPVIFAGGQDR ddPTM_HeLa_A486_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 GVT(0.001)IPYRPKPS(0.119)S(0.79)S(0.091)PVIFAGGQDR 131.5 1.02E-06 387880000 250540 325650 225030 164020 305860 280800 320690 313790 250070 326780 TRUE FALSE FALSE 232978.4398 299844.308 312167.6425 381846.8491 267496.1868 246157.751 240449.9701 242346.867 271746.2689 244952.161 0.951118124 1.224093336 1.274402484 1.558862953 1.092034402 1.004921736 0.981620122 0.98936407 1.109385064 1 17.90214049 -5.985667339 24.98545764 1.017989582 1.260926518 0.384533317 0.140454737 249.7526618 435379.5391 0.045385796 0.051442314 1.03E-06 5.985667339 0.242936936 GVTIPYRPKPSS(ph)SPVIFAGGQLTK ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQLTK 24 2 H3BRU6;F8VZX2 H3BRU6 PCBP2 1 0 GVT(0.097)IPY(0.008)RPKPS(0.094)S(0.401)S(0.401)PVIFAGGQLTK 84.097 0.001833 1019500000 609340 531440 426940 685010 669280 595570 729260 677740 499910 819140 TRUE FALSE FALSE 744885.5808 593587.2851 584882.8725 722430.3618 602644.1332 626753.1243 573447.6435 511523.2023 600237.3516 614943.4732 1.211307402 0.965271299 0.951116481 1.174791494 0.979999235 1.01920445 0.932520904 0.8318215 0.976085409 1 19.23009428 -6.550750942 1.90444234 0.920399412 1.054022243 0.28656736 0.089707716 0.435708968 3.192684409 0.041137225 0.030621448 2.81E-07 6.550750942 0.133622831 GVTIPYRPKPSS(ph)SPVIFAGGQLTK ddPTM_HeLa_A486_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQLTK 24 2 H3BRU6;F8VZX2 H3BRU6 PCBP2 1 0 GVTIPYRPKPS(0.109)S(0.637)S(0.254)PVIFAGGQLTK 192.42 4.37E-21 268950000 132860 153720 81980 48253 123020 160240 146570 156700 127490 178680 TRUE FALSE FALSE 123547.2001 141538.6674 113724.8515 112335.4226 107589.6845 140471.218 109896.6357 121022.8307 138540.9359 133937.365 0.922425196 1.056752665 0.849089808 0.838716086 0.803283568 1.048782899 0.820507673 0.903577809 1.034371072 1 17.03119897 -7.756472798 24.89258939 1.017185558 0.904884649 0.223155302 0.083429171 163.9734657 821871.7327 0.061753541 0.021676259 1.75E-08 7.756472798 -0.112300909 GVTIPYRPKPSSS(ph)PVIFAGGQAYTIQGQYAIPQPDLTK ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK 38 2 Q15366-5;Q15366-8;Q15366-4;Q15366-7;F8VRH0 Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 GVT(0.005)IPY(0.001)RPKPS(0.053)S(0.218)S(0.723)PVIFAGGQAYTIQGQYAIPQPDLTK 101.77 2.47E-05 1302800000 484140 367590 285280 662930 504310 493630 723240 659680 390230 840800 TRUE FALSE FALSE 591835.2727 410576.4529 390816.9435 699144.1873 454099.1257 519475.7035 568713.8657 497892.4457 468545.5816 631204.0338 0.937629104 0.650465509 0.619161036 1.107635804 0.719417338 0.822991736 0.900998465 0.788797946 0.742304479 1 19.2677469 -11.58674653 2.096473017 4.259221874 0.808166828 0.147024822 0.137281472 3932919.492 197192.4122 61542026.9 0.033858501 2.59E-12 11.58674653 -3.451055045 GVTIPYRPKPSSS(ph)PVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 GVTIPYRPKPSS(0.002)S(0.998)PVIFAGGQDR 205.73 2.88E-29 49247000000 19093000 19949000 18791000 20670000 23293000 20038000 25376000 20747000 18805000 25286000 TRUE FALSE FALSE 23340171.98 22281862.02 25742572.86 21799149.76 20973867.13 21087158.7 19954210.3 15658765.72 22578991.01 18982665.55 1.229551873 1.173800484 1.356109488 1.148371376 1.104895784 1.110863942 1.051180628 0.824898151 1.189453133 1 24.17817925 -6.05342912 1.101802199 1.005436109 1.244381368 0.48187455 0.097319032 0.407988768 1.047887099 0.046456298 0.05125004 8.84E-07 6.05342912 0.238945259 GVTIPYRPKPSSS(ph)PVIFAGGQDR ddPTM_HeLa_A486_30min_R1 2 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 GVTIPYRPKPS(0.19)S(0.308)S(0.502)PVIFAGGQDR;GVTIPYRPKPSS(0.006)S(0.994)PVIFAGGQDR ; 224.9 1.58E-38 75520000000 13478600 14707700 11964200 4872160 15200600 14197700 16700200 16213700 12224600 16012500 TRUE FALSE FALSE 12533819.74 13542208.29 16597058.65 11342634.71 13293999.01 12446132.13 12521633.32 12522194.45 13284238.17 12002865.78 1.0442356 1.128247915 1.382757998 0.94499388 1.107568747 1.036930043 1.043220307 1.043267057 1.106755538 1 23.51687557 -5.296808651 24.99941955 1.044966385 1.179397577 0.347579744 0.090589471 686.483447 485213.1689 0.025297636 0.037524137 5.05E-06 5.296808651 0.134431192 GVTIPYRPKPSSS(ph)PVIFAGGQLTK ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQLTK 24 2 H3BRU6;F8VZX2 H3BRU6 PCBP2 1 0 GVTIPYRPKPS(0.033)S(0.161)S(0.806)PVIFAGGQLTK 219.27 2.38E-38 1087100000 925260 782380 690780 1064900 1002600 996570 1250200 1204300 864200 1435800 TRUE FALSE FALSE 1131080.895 873872.5352 946328.2678 1123072.791 902777.6237 1048748.864 983084.5568 908943.5367 1037637.013 1077881.484 1.049355529 0.810731558 0.877952059 1.041926044 0.837548132 0.972972335 0.912052551 0.843268532 0.962663362 1 20.03976713 -10.68939091 3.896918944 1.005033343 0.918290045 0.075100831 0.079249944 0.003461332 0.00027589 0.076638922 0.017543311 2.04E-11 10.68939091 -0.086743298 GVTIPYRPKPSSS(ph)PVIFAGGQLTK ddPTM_HeLa_A486_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQLTK 24 2 H3BRU6;F8VZX2 H3BRU6 PCBP2 1 0 GVTIPYRPKPS(0.386)S(0.076)S(0.538)PVIFAGGQLTK 130.46 2.74E-06 159600000 131330 115670 70799 51035 111210 119440 138600 129970 112930 156920 TRUE FALSE FALSE 122124.4452 106503.8879 98214.26886 118812.0592 97261.00481 104704.7072 103920.814 100378.6682 122718.8633 117626.2106 1.038241771 0.905443501 0.83496925 1.010081499 0.826865069 0.890147754 0.883483481 0.853369905 1.04329522 1 16.84385005 -7.769648197 24.999939 1.021647675 0.902626573 0.328431804 0.066444676 223.0888483 679389.7461 0.058594779 0.016161739 1.70E-08 7.769648197 -0.119021101 GVTIPYRPKPSSSPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 0 0 58.015 0.024861 20635000 13362 13380 14991 19146 21052 11146 19308 14100 13055 27155 FALSE FALSE TRUE 16334.3308 14944.67461 20536.79473 20191.8975 18955.98896 11729.58733 15182.68807 10641.95289 15675.01875 20385.75825 0.801261871 0.73309388 1.007408921 0.990490383 0.929864307 0.575381459 0.744769357 0.522028799 0.768920074 1 14.315274 -6.245765301 24.55072767 0.693756073 0.895408417 0.251344644 0.142661009 782.6855583 1225941.583 0.046633058 0.04647314 5.68E-07 6.245765301 0.201652343 GVTLGFR ddPTM_HeLa_A485_30min_R1 2 GVTLGFR 7 0 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969;H0Y9V9 E7ESE0 RPL9 60S ribosomal protein L9 0 0 ; ; 118.01 0.012133 149418000 121159 160394 194929 131710 200080 191849 222690 240100 171388 206648 FALSE FALSE TRUE 148110.4016 179150.6831 267041.3488 138904.9838 180159.3327 201893.917 175110.4623 181215.0985 205783.9995 155134.4567 0.954722792 1.154809105 1.721354201 0.895384473 1.161310882 1.301412473 1.128765756 1.168116371 1.326488028 1 17.24315963 -10.33436979 3.193766186 0.998540685 1.204948396 0.073178945 0.214656333 68811114.65 86585476.45 979092.485 0.054203972 4.63E-11 10.33436979 0.20640771 GVTLGFR ddPTM_HeLa_A486_30min_R1 2 GVTLGFR 7 0 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969;H0Y9V9 E7ESE0 RPL9 60S ribosomal protein L9 0 0 ; ; 111.28 0.019231 144244000 100790 119155 122001 38973 151689 115056 133110 131535 123477 134823 FALSE FALSE TRUE 93725.14148 109712.7238 169243.0545 90731.11359 132662.7512 100861.5605 99804.47011 101587.3519 134180.0858 101062.4432 0.927398334 1.085593424 1.674638462 0.897772809 1.312681021 0.998012291 0.987552516 1.005193904 1.327694853 1 16.62488744 -6.281527517 24.53124563 1.059256701 1.186236513 0.062143814 0.224108856 1985.342245 2424454.123 0.078754553 0.069539395 5.23E-07 6.281527517 0.126979812 GVTQFGNK(ac)YIQQTKPLTLER ddPTM_HeLa_A485_30min_R1 1 GVTQFGNKYIQQTKPLTLER 20 2 O43809 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 1 GVTQFGNK(1)YIQQTKPLTLER 258.91 8.77E-47 150460000 19132 20929 23059 20408 29096 28053 35679 50469 33037 47639 FALSE TRUE FALSE 23387.8474 23376.46449 31589.48367 21522.83736 26199.10008 29521.8117 28055.89018 38091.39862 39667.22287 35763.47403 0.653959047 0.653640764 0.883289013 0.601810589 0.732565859 0.825473825 0.784484476 1.065092239 1.109154632 1 15.12619926 -7.149870945 1.984325889 1.078763823 0.720062717 0.761134854 0.083325997 0.164361789 1.232729769 0.055153636 0.024941702 7.08E-08 7.149870945 -0.358701106 GVTQFGNK(ac)YIQQTKPLTLER ddPTM_HeLa_A486_30min_R1 2 GVTQFGNKYIQQTKPLTLER 20 2 O43809 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 1 ; GVTQFGNK(1)YIQQTKPLTLER;GVTQFGNK(1)YIQQTKPLTLER 270.47 4.15E-58 410240000 67854.1 84392 79651 26794.8 123971 106780 104886 101534 97231 108565 FALSE TRUE FALSE 63097.87799 77704.47057 110494.0003 62379.64853 108421.4012 93606.56926 78642.41343 78416.92467 105659.0614 81379.61736 0.775352355 0.954839468 1.357760136 0.766526688 1.332291853 1.150245876 0.966364994 0.963594168 1.298347975 1 16.31237988 -4.524176932 24.99971143 1.099900617 0.820224041 0.246901895 0.179431381 47.92061312 922853.7909 0.043518211 0.117151154 2.99E-05 4.524176932 -0.279676576 GVTVIGKLDIVWK ddPTM_HeLa_A486_30min_R1 1 GVTVIGKLDIVWK 13 1 A5PLN9-7;A5PLN9-2;A5PLN9-4;A5PLN9;A5PLN9-5 A5PLN9-7 TRAPPC13 Trafficking protein particle complex subunit 13 0 0 69.864 0.033222 400300000 828060 1047900 684580 409750 1222200 1180300 1349200 1300000 1095100 1442700 FALSE FALSE TRUE 770017.2701 964860.5876 949667.7097 953918.7076 1068900.279 1034686.586 1011615.89 1004018.379 1190024.15 1081438.53 0.712030549 0.892201046 0.878152279 0.882083153 0.988405952 0.956768747 0.935435406 0.928410031 1.1004085 1 20.04452023 -2.704642222 0.381236789 0.999148824 4.23E-13 0.714231178 0.051261796 10.79542264 0.486406137 0.040345554 6.298907672 0.001974048 2.704642222 -0.999148824 GVVDSEDLPLNISR ddPTM_HeLa_A485_30min_R1 4 GVVDSEDLPLNISR 14 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 0 ;;; ;;; 346.14 1.11E-114 438833000 456165 590018 649750 446011 728220 535166 617050 651160 578470 606460 FALSE FALSE TRUE 557637.3305 659015.4726 890119.5634 470375.4516 655715.8599 563186.4642 485212.2267 491461.989 694563.623 455280.6831 1.224820976 1.447492716 1.955100659 1.033154863 1.440245291 1.237009355 1.065743056 1.07947033 1.525572353 1 18.79639672 -5.296192346 24.99940555 1.206918916 1.532974106 0.313228749 0.233779019 746.810632 537213.536 0.065568323 0.097258507 5.06E-06 5.296192346 0.32605519 GVVDSEDLPLNISR ddPTM_HeLa_A486_30min_R1 2 GVVDSEDLPLNISR 14 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 0 ; ; 225.15 3.04E-26 245600000 315710 381660 382980 191737 742170 353740 411260 406550 363000 341130 FALSE FALSE TRUE 293580.3593 351415.8716 531280.1126 446373.4259 649080.1181 310099.1554 308358.3981 313987.4399 394465.1323 255708.8276 1.148104123 1.374281345 2.077676072 1.745631662 2.538356318 1.212704146 1.20589657 1.227910052 1.542634003 1 17.96414244 GVVEVTHDLQK ddPTM_HeLa_A485_30min_R1 1 GVVEVTHDLQK 11 0 P50454;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 173.64 3.82E-07 45608000 60220 69745 63564 67689 90257 85538 99728 121720 64956 101750 FALSE FALSE TRUE 73615.73124 77901.07105 87078.96872 71386.67867 81270.69617 90016.63741 78420.2981 91867.97915 77992.07339 76385.59757 0.963738369 1.01983978 1.139991981 0.934556787 1.063953137 1.178450392 1.026637227 1.202687183 1.021031135 1 16.22101302 -5.995711879 24.98721001 1.097674768 1.02079515 0.142970466 0.079318709 215.2400626 1254204.247 0.023456585 0.026492366 1.01E-06 5.995711879 -0.076879619 GVVFCYWFNR ddPTM_HeLa_A485_30min_R1 2 GVVFCYWFNR 10 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 0 0 ; ; 111.04 0.0079668 10695000 14994.9 14855.4 15063.9 17509.4 22406.9 15811.9 23906 23707.6 14654.6 22464.8 FALSE FALSE TRUE 18330.46377 16592.60981 20636.66347 18465.89419 20175.99036 16639.78663 18798.28781 17893.27393 17595.6438 16864.73879 1.086910624 0.983864026 1.223657462 1.094941013 1.196341705 0.986661391 1.114650398 1.060987315 1.043339243 1 14.04172235 -6.27194668 24.99882464 1.049534552 1.114422613 0.227814758 0.069022685 1352.375663 3217546.5 0.024290612 0.021658346 5.35E-07 6.27194668 0.064888061 GVVIPTWNIS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 GVVIPTWNISPIK 13 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 0 GVVIPTWNIS(1)PIK;GVVIPT(0.407)WNIS(0.593)PIK ; 104.24 0.00046298 39758000 120342 122994 76970 53007 115690 112103 129746 134099 103734 159898 TRUE FALSE FALSE 111906.6472 113247.5075 106774.8453 123402.9748 101179.0814 98272.87164 97282.17849 103567.5851 112725.7466 119858.5 0.93365633 0.944843357 0.890840827 1.02957216 0.84415441 0.819907404 0.811641882 0.864082105 0.940490216 1 16.8709727 -5.798464616 24.99987808 0.866822945 0.945173252 0.211868647 0.062560657 227.2213974 153421.4138 0.019119157 0.021679668 1.59E-06 5.798464616 0.078350307 GVVIPTWNIS(ph)PIKK ddPTM_HeLa_A485_30min_R1 2 GVVIPTWNISPIKK 14 1 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 0 GVVIPTWNIS(1)PIKK;GVVIPTWNIS(1)PIKK ; 200.94 4.82E-22 748800000 538658 499442 319203 745720 588560 604070 889740 935500 457184 947160 TRUE FALSE FALSE 658480.6138 557847.3973 437289.4728 786456.7953 529960.8998 635698.1711 699639.7805 706067.1582 548936.6353 711050.4432 0.92606737 0.784539835 0.614990789 1.10604923 0.745321102 0.894026826 0.983952386 0.992991658 0.772008007 1 19.43959239 -5.255596198 24.99596676 0.920805816 0.776133401 0.242092662 0.123270332 731.7004077 3130058.855 0.033131953 0.055495977 5.55E-06 5.255596198 -0.144672414 GVVIPTWNIS(ph)PIKK ddPTM_HeLa_A486_30min_R1 2 GVVIPTWNISPIKK 14 1 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 0 GVVIPTWNIS(1)PIKK;GVVIPTWNIS(1)PIKK ; 211.12 1.44E-22 716140000 1093750 916570 455940 501660 810240 1006260 1295380 1156500 697520 1458010 TRUE FALSE FALSE 1017083.773 843937.6551 632492.1785 1167889.832 708612.144 882117.8721 971262.2229 893190.1962 757981.5952 1092914.806 0.930615788 0.772189791 0.578720478 1.06860098 0.648369059 0.807124094 0.888689784 0.817255097 0.693541337 1 20.05974951 -10.44881285 3.153823628 1.003650739 0.79989025 0.164728701 0.134716737 65624688.19 83065125.8 2126468.143 0.033188614 3.56E-11 10.44881285 -0.203760489 GVVQELQQAISK ddPTM_HeLa_A485_30min_R1 1 GVVQELQQAISK 12 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7;E9PN91 P29692-2 EEF1D Elongation factor 1-delta 0 0 160.15 1.49E-05 11940000 7513.8 9082.8 11568 8471.2 13796 10424 10948 11454 10084 14024 FALSE FALSE TRUE 9185.218888 10144.95445 15847.48458 8933.960206 12422.4218 10969.78452 8608.870363 8644.888541 12107.7663 10528.07489 0.872449995 0.963609639 1.505259484 0.848584409 1.179932887 1.041955403 0.817706034 0.821127189 1.150045609 1 13.36195404 -6.542020389 22.64740457 0.931958746 1.082442559 0.084469769 0.194606038 186.1097599 220189.9899 0.073892109 0.057251961 2.87E-07 6.542020389 0.150483813 GVVVLAK ddPTM_HeLa_A485_30min_R1 2 GVVVLAK 7 0 P52895;B4DK69;Q04828;H0Y804;P17516;A0A0A0MSS8;P42330;S4R3Z2;P42330-2 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ; ; 140.79 0.0037736 181214000 365760 416280 413560 403080 492210 484610 611250 598180 432610 568840 FALSE FALSE TRUE 447122.0501 464960.3248 566553.0537 425099.2397 443203.8441 509983.4303 480651.444 451475.4171 519430.8589 427038.6567 1.047029451 1.088801488 1.326702032 0.995458451 1.037854155 1.194232471 1.125545513 1.057223766 1.216355594 1 18.70400715 -10.03552763 4.132629845 0.999988632 1.120394901 0.127670164 0.094890947 12699890.64 10279983.8 1219.273295 0.022710752 9.21E-11 10.03552763 0.120406269 GVVVLAK ddPTM_HeLa_A486_30min_R1 3 GVVVLAK 7 0 P52895;B4DK69;Q04828;H0Y804;P17516;A0A0A0MSS8;P42330;S4R3Z2;P42330-2 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ;; ;; 140.79 0.0037736 124995000 470980 565780 461200 190887 936970 593860 595560 618300 470900 620380 FALSE FALSE TRUE 437966.7341 520945.5323 639788.9914 444394.5829 819446.4857 520595.5911 446544.5888 477526.5874 511717.9912 465032.81 0.941797492 1.12023393 1.375793229 0.955619847 1.762126173 1.119481421 0.96024319 1.026866443 1.100391156 1 18.82697298 -6.518397584 24.99640823 1.026363771 1.239998317 0.166637608 0.22039587 359.7612751 2006809.232 0.082738422 0.065758059 3.03E-07 6.518397584 0.213634546 GVVVVIK ddPTM_HeLa_A485_30min_R1 2 GVVVVIK 7 0 P46779;H0YMF4;H0YKD8;P46779-4;P46779-5;P46779-2;P46779-3 P46779 RPL28 60S ribosomal protein L28 0 0 ; ; 130.84 0.0065522 175589000 429590 493570 480160 433270 607020 499090 585350 602590 453300 637110 FALSE FALSE TRUE 525150.8134 551288.718 657791.1651 456938.443 546582.9574 525221.5807 460285.1906 454803.8577 544273.1521 478290.2021 1.097975269 1.1526239 1.375297178 0.955358151 1.142785186 1.098123228 0.962355467 0.950895201 1.137955889 1 18.86752671 -5.282695945 24.96731082 1.037357437 1.203031337 0.41311823 0.094552237 790.5630714 928569.1686 0.027059548 0.040174718 5.22E-06 5.282695945 0.165673901 GVVVVIK ddPTM_HeLa_A486_30min_R1 2 GVVVVIK 7 0 P46779;H0YMF4;H0YKD8;P46779-4;P46779-5;P46779-2;P46779-3 P46779 RPL28 60S ribosomal protein L28 0 0 ; ; 140.79 0.0037736 145865000 362790 378290 298260 135169 425270 353000 405380 382220 314330 419780 FALSE FALSE TRUE 337360.2944 348312.9227 413754.2597 314680.2631 371928.6711 309450.449 303949.6363 295196.8498 341576.3775 314664.3557 1.072127454 1.106934791 1.314906669 1.000050553 1.18198539 0.98343026 0.965948735 0.938132472 1.085526121 1 18.26345424 -6.271369984 24.61817844 0.988949612 1.136105921 0.412590085 0.083738234 551.8857607 1368132.821 0.028829467 0.025739984 5.35E-07 6.271369984 0.147156309 GVVVVIKR ddPTM_HeLa_A485_30min_R1 1 GVVVVIKR 8 1 P46779;H0YMF4;H0YKD8;P46779-4;P46779-5;P46779-2;P46779-3 P46779 RPL28 60S ribosomal protein L28 0 0 117.62 0.00092118 0 9840.7 13576 12077 7688.1 18459 20342 22646 32513 14007 21417 FALSE FALSE TRUE 12029.72976 15163.5951 16544.78487 8108.081436 16621.15715 21407.07567 17807.4971 24539.13577 16818.07642 16078.13605 0.748204252 0.94311897 1.029023813 0.504292376 1.033773884 1.331440137 1.107559797 1.526242575 1.046021527 1 13.97281254 -5.998304982 24.99113225 1.224044941 0.824007921 0.487667768 0.190393693 45.5601522 671712.0143 0.057226257 0.064435067 1.00E-06 5.998304982 -0.40003702 GWAAAVTFHPR ddPTM_HeLa_A485_30min_R1 2 GWAAAVTFHPR 11 0 O15067;H0YGH1 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 0 ; ; 141.95 0.00023872 41044000 40788 54618 63263 53322 69012 55498 60278 62426 53335 68311 FALSE FALSE TRUE 49861.14988 61005.09999 86666.61629 56234.84584 62140.92296 58403.78946 47399.11287 47115.92562 64038.84528 51282.32487 0.972287236 1.189593103 1.689990002 1.096573644 1.211741533 1.138867819 0.92427777 0.918755648 1.248750821 1 15.64617405 -6.311476304 1.901788291 1.018563965 1.259529746 0.197363135 0.193608436 0.547037445 3.895014258 0.083668538 0.073979172 4.88E-07 6.311476304 0.240965782 GWAAAVTFHPR ddPTM_HeLa_A486_30min_R1 1 GWAAAVTFHPR 11 0 O15067;H0YGH1 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 0 137.98 0.00030327 14367000 17861 22765 24493 6930.1 27727 21125 25097 21810 20964 24089 FALSE FALSE TRUE 16609.03613 20961.01849 33977.34555 16133.62303 24249.22112 18518.81228 18817.46515 16844.33911 22781.1764 18056.95761 0.919813653 1.160827807 1.881676099 0.893485125 1.342929504 1.025577657 1.042117147 0.932844806 1.261628725 1 14.14026722 -6.274195233 23.99217117 1.047591666 1.251788087 0.108515385 0.267148976 1035.068223 1946826.864 0.094074907 0.083562645 5.32E-07 6.274195233 0.204196422 GWDLVDAVT(ph)PGPQPTLEQLEEGGPRPLER ddPTM_HeLa_A485_30min_R1 1 GWDLVDAVTPGPQPTLEQLEEGGPRPLER 29 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 GWDLVDAVT(0.998)PGPQPT(0.002)LEQLEEGGPRPLER 99.866 0.00086924 71300000 50536 63334 67491 50089 81402 56794 64090 80658 51771 63663 TRUE FALSE FALSE 61777.55885 70740.36037 92458.72943 52825.23524 73297.33106 59767.64602 50396.64793 60876.49903 62160.96483 47792.98573 1.292607229 1.480141056 1.934566925 1.105292637 1.533642018 1.250552672 1.054477915 1.273753839 1.300629452 1 15.54451128 -6.094695456 1.22928119 1.174057399 1.51618621 0.309598939 0.216035483 0.58332 1.827171791 0.100425356 0.105056749 8.04E-07 6.094695456 0.34212881 GWDLVDAVT(ph)PGPQPTLEQLEEGGPRPLER ddPTM_HeLa_A486_30min_R1 2 GWDLVDAVTPGPQPTLEQLEEGGPRPLER 29 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 GWDLVDAVT(0.999)PGPQPT(0.001)LEQLEEGGPRPLER;GWDLVDAVT(1)PGPQPTLEQLEEGGPRPLER ; 105.48 0.00034542 104814000 89548 102024 93585 33191 125538 80946 103195 93300 78474 90336 TRUE FALSE FALSE 83271.14763 93939.24667 129823.6183 77270.32538 109791.8534 70959.70552 77374.51951 72057.62672 85276.1895 67715.27761 1.229724673 1.387268132 1.917198347 1.141106233 1.621374929 1.04791279 1.142644943 1.064126579 1.259334562 1 16.04719374 -6.271225528 24.9460094 1.109301745 1.463088316 0.421074605 0.208932585 677.8085958 1727806.93 0.071723589 0.064016033 5.36E-07 6.271225528 0.353786571 GWDS(ph)SHEDDLPVYLAR ddPTM_HeLa_A486_30min_R1 2 GWDSSHEDDLPVYLAR 16 0 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GWDS(0.99)S(0.01)HEDDLPVYLAR;GWDS(0.98)S(0.02)HEDDLPVYLAR ; 185.63 6.32E-18 106113000 89762 130440 117758 33993 113731 127299 113030 108252 125145 101304 TRUE FALSE FALSE 83470.14733 120103.4593 163357.0513 79137.42191 99465.79748 111594.1437 84748.69849 83605.38272 135992.6694 75936.81902 1.099205213 1.581623525 2.151223259 1.042148235 1.309849409 1.469565688 1.116042252 1.100986107 1.790866027 1 16.21251195 -5.320077756 24.99999746 1.270200782 1.607789274 0.196660895 0.323185669 425.3724829 181353.0865 0.090581072 0.134353482 4.79E-06 5.320077756 0.337588492 GWGS(ph)PGRPK ddPTM_HeLa_A485_30min_R1 1 GWGSPGRPK 9 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 GWGS(1)PGRPK 59.57 0.01583 284370000 226490 252260 209310 271090 270100 282860 346920 352980 230710 349470 TRUE FALSE FALSE 276871.9191 281759.6126 286742.4791 285898.9603 243207.8956 297670.1122 272797.7079 266411.1015 277011.3808 262353.5605 1.055338904 1.073969082 1.092962026 1.089746828 0.927023423 1.134614341 1.039809436 1.015465927 1.055870484 1 18.00115284 -6.774075371 0.008245447 2.34E-08 2.09190112 0.112965838 0.051688259 5188.832562 26.17705166 3277.8481 3360.254405 1.68E-07 6.774075371 2.091901097 GWGS(ph)PGRPK ddPTM_HeLa_A486_30min_R1 3 GWGSPGRPK 9 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 GWGS(1)PGRPK;GWGS(1)PGRPK;GWGS(1)PGRPK ;; 64.906 0.0095281 1949690000 2589480 2619330 1616200 716820 2515030 2627710 2748960 2814430 2039350 2602670 TRUE FALSE FALSE 2407970.824 2411764.751 2242035.923 1668793.186 2199571.486 2303529.857 2061141.132 2173645.728 2216122.5 1950944.491 1.234259014 1.236203676 1.149205389 0.855377072 1.127439297 1.180725473 1.05648374 1.114150473 1.135922887 1 20.8957413 -5.000310229 17.26214926 1.072834092 1.224604823 0.381589899 0.08567202 0.247579924 13742.05989 0.023364384 0.047006347 9.99E-06 5.000310229 0.151770731 GWLRDPS(ph)ASPGDAGEQAIR ddPTM_HeLa_A486_30min_R1 1 GWLRDPSASPGDAGEQAIR 19 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 GWLRDPS(0.647)AS(0.353)PGDAGEQAIR 146.81 2.71E-07 193730000 145230 161990 161290 65823 232120 131940 177790 185550 123510 163100 TRUE FALSE FALSE 135050.127 149153.3224 223745.8075 153239.2705 203005.3452 115662.5843 133305.0615 143304.3155 134215.9462 122258.6984 1.104625918 1.219981272 1.830101338 1.253401783 1.660457275 0.946047895 1.09035237 1.172140039 1.097802839 1 16.89957759 -6.273609478 24.97836895 1.073845111 1.417177071 0.421307647 0.206247938 801.410593 1644840.43 0.073217825 0.06504241 5.33E-07 6.273609478 0.34333196 GWLRDPSAS(ph)PGDAGEQAIR ddPTM_HeLa_A485_30min_R1 6 GWLRDPSASPGDAGEQAIR 19 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 GWLRDPS(0.001)AS(0.999)PGDAGEQAIR;GWLRDPSAS(1)PGDAGEQAIR;GWLRDPS(0.002)AS(0.998)PGDAGEQAIR;GWLRDPSAS(1)PGDAGEQAIR;GWLRDPS(0.001)AS(0.999)PGDAGEQAIR;GWLRDPS(0.017)AS(0.983)PGDAGEQAIR ;;;;; 232.44 5.99E-36 6185000000 1283197 2091390 2081360 1169324 2272620 2117400 2416190 2721860 1811410 1662750 TRUE FALSE FALSE 1568639.746 2335959.868 2851341.677 1233201.209 2046349.973 2228263.79 1899951.268 2054319.567 2174943.372 1248257.026 1.256664063 1.871377304 2.284258464 0.987938529 1.639365877 1.785100139 1.522083376 1.645750454 1.742384242 1 20.2514836 -10.05021224 4.989210163 0.999990075 1.645312985 0.251345098 0.329655871 43485383.1 87596494.13 3627.650653 0.079090142 8.91E-11 10.05021224 0.64532291 GWLRDPSAS(ph)PGDAGEQAIR ddPTM_HeLa_A486_30min_R1 5 GWLRDPSASPGDAGEQAIR 19 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 GWLRDPSAS(1)PGDAGEQAIR;GWLRDPS(0.001)AS(0.999)PGDAGEQAIR;GWLRDPS(0.003)AS(0.997)PGDAGEQAIR;GWLRDPS(0.02)AS(0.98)PGDAGEQAIR;GWLRDPSAS(1)PGDAGEQAIR ;;;; 232.44 5.99E-36 3288850000 1239500 1414550 1465430 520600 1936490 1145390 1515500 1627060 1051370 1499180 TRUE FALSE FALSE 1152617.451 1302455.906 2032883.742 1211983.11 1693597.367 1004083.427 1136305.871 1256613.956 1142503.598 1123775.57 1.025665161 1.159000018 1.808976628 1.078492131 1.507060139 0.893491062 1.011150181 1.11820722 1.016665274 1 20.09992251 -6.268790775 24.98163818 1.015493663 1.321336169 0.334518649 0.216962961 710.8298855 2415547.48 0.075806315 0.068190845 5.39E-07 6.268790775 0.305842506 GWNGS(ph)LR ddPTM_HeLa_A486_30min_R1 2 GWNGSLR 7 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 GWNGS(1)LR;GWNGS(1)LR ; 77.318 0.014983 417370000 558880 721840 677510 223750 850380 644460 713560 784780 571000 690930 TRUE FALSE FALSE 519705.3981 664638.7695 939860.0163 520901.3077 743717.4109 564953.0776 535019.7407 606102.7256 620494.7397 517916.6308 1.003453775 1.283292966 1.814693641 1.005762852 1.43597901 1.090818568 1.033022902 1.17027083 1.198059114 1 18.98236036 -6.280757752 23.73200092 1.104987958 1.318516454 0.18373021 0.220824723 774.0513646 950892.9666 0.078011141 0.068927136 5.24E-07 6.280757752 0.213528496 GWSQEGPVKS(ph)PAECR ddPTM_HeLa_A485_30min_R1 2 GWSQEGPVKSPAECR 15 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR ; 118.46 4.99E-05 1264190000 684440 769610 606640 930560 838130 753850 976890 907880 627800 1106020 TRUE FALSE FALSE 836691.3167 859609.1948 831061.3804 981394.1365 754682.8343 793320.4203 768169.471 685221.0065 753793.7015 830309.5688 1.007685986 1.035287593 1.000905459 1.181961733 0.908917424 0.955451376 0.925160326 0.825259677 0.907846579 1 19.6632898 -5.816478033 24.99984229 0.913688547 1.050980067 0.530267456 0.062439002 69.29628089 31475.49984 0.019380661 0.021975623 1.53E-06 5.816478033 0.137291521 GWSQEGPVKS(ph)PAECR ddPTM_HeLa_A486_30min_R1 3 GWSQEGPVKSPAECR 15 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GWSQEGPVKS(1)PAECR;GWSQEGPVKS(1)PAECR;GWS(0.002)QEGPVKS(0.998)PAECR ;; 115.63 5.51E-05 828220000 1008940 1010610 551740 655750 832790 1292920 1455110 1420900 785020 2046010 TRUE FALSE FALSE 938218.5162 930525.583 765388.5041 1526619.14 728333.7127 1133412.676 1091026.087 1097392.088 853066.1657 1533675.779 0.611745018 0.606729007 0.49905496 0.995398872 0.474894187 0.739017132 0.711379877 0.71553069 0.556223276 1 20.5485621 -11.31621501 2.334338484 2.855501324 0.660938934 0.345541353 0.141643005 9824371.292 1190053.087 96504751.59 0.034701989 4.83E-12 11.31621501 -2.19456239 GYAAGAQPRPS(ph)ANRENFSPER ddPTM_HeLa_A485_30min_R1 1 GYAAGAQPRPSANRENFSPER 21 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 GYAAGAQPRPS(0.962)ANRENFS(0.038)PER 69.704 0.0043473 913360000 101910 219250 164670 66725 190730 229440 273950 418660 121770 96956 TRUE FALSE FALSE 124579.5279 244889.3803 225588.2855 70370.01779 171740.2515 241453.1236 215418.3445 315982.9786 146208.1221 72786.65354 1.711571035 3.364481926 3.099308383 0.966798367 2.359501957 3.317271943 2.959585776 4.341221408 2.008721585 1 16.15138632 -6.191825747 9.785781035 2.948535153 2.32878048 0.018301489 1.032415176 1.534245916 209.1681757 0.336121781 0.336137307 6.43E-07 6.191825747 -0.619754674 GYAAGAQPRPSANRENFS(ph)PER ddPTM_HeLa_A485_30min_R1 2 GYAAGAQPRPSANRENFSPER 21 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 GYAAGAQPRPSANRENFS(1)PER;GYAAGAQPRPSANRENFS(1)PER ; 150.06 6.01E-10 2661800000 277800 945790 811550 142568 894460 894880 975600 1764450 553190 246890 TRUE FALSE FALSE 339595.6516 1056391.913 1111776.116 150356.1288 805404.4218 941734.5331 767155.0901 1331715.871 664210.1588 185344.8667 1.832236618 5.699601679 5.998418712 0.811223594 4.345436894 5.080985246 4.13906845 7.185070161 3.583644752 1 17.49985263 -4.240037661 23.34787662 4.377829657 1.83223018 0.113229213 1.938236743 4524.772037 4936043.255 0.471803523 18.89838507 5.75E-05 4.240037661 -2.545599477 GYADIVQLLLAK ddPTM_HeLa_A485_30min_R1 1 GYADIVQLLLAK 12 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 0 0 141.93 0.00060049 1970600 1519.4 1951.5 1646.9 2308.1 2987 3369 2606 2943.6 2512.3 3381.2 FALSE FALSE TRUE 1857.385288 2179.710949 2256.156843 2434.185659 2689.603792 3545.395631 2049.206811 2221.677485 3016.495566 2538.329066 0.731735421 0.858718823 0.888835444 0.958971668 1.059596184 1.396743896 0.807305419 0.875251958 1.188378452 1 11.3096634 -5.030611168 1.38768862 1.04841183 0.766279001 0.315715278 0.154670854 0.653618913 2.310611931 0.052363742 0.173766206 9.32E-06 5.030611168 -0.282132829 GYADIVQLLLAK ddPTM_HeLa_A486_30min_R1 1 GYADIVQLLLAK 12 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 0 0 178.08 8.86E-09 1733500 4202.6 5838.5 5513.1 1929.7 6271.3 6303.9 6012.4 6438.1 6816.2 6977.4 FALSE FALSE TRUE 3908.019442 5375.835997 7647.919966 4492.439122 5484.695076 5526.188911 4508.033927 4972.285173 7407.033704 5230.213625 0.747200731 1.027842528 1.462257666 0.858939891 1.048656034 1.056589522 0.861921568 0.950684911 1.416200988 1 12.35265416 -4.281843921 5.1475394 1.072857388 0.736630152 0.205009826 0.195352409 0.240295458 19.69887529 0.048572888 0.268764664 5.23E-05 4.281843921 -0.336227236 GYADS(ph)PSK ddPTM_HeLa_A485_30min_R1 8 GYADSPSK 8 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 1 0 GYADS(0.986)PS(0.014)K;GYADS(0.998)PS(0.002)K;GYADS(1)PSK;GYADS(0.993)PS(0.007)K;GYADS(0.874)PS(0.126)K;GYADS(0.868)PS(0.132)K;GYADS(1)PSK;GYADS(0.991)PS(0.009)K ;;;;;;; 201.84 1.72E-06 65491380000 29083080 25451940 20919560 41373380 31404680 24861380 37760430 33071890 23658690 49910800 TRUE FALSE FALSE 35552510.81 28428322.98 28658575.78 43633502.99 28277919.79 26163083.41 29692605.66 24960957.12 28406772.07 37468956.1 0.94885245 0.758716707 0.764861869 1.164524116 0.754702632 0.69826027 0.792458845 0.666177009 0.75814154 1 25.15919245 -5.907708712 19.93208905 0.758122939 0.897106363 0.172676395 0.135122339 6.695852919 1437.746375 0.041343628 0.046879435 1.24E-06 5.907708712 0.138983424 GYADS(ph)PSK ddPTM_HeLa_A486_30min_R1 7 GYADSPSK 8 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 1 0 GYADS(0.633)PS(0.367)K;GYADS(0.897)PS(0.103)K;GYADS(0.958)PS(0.042)K;GYADS(0.827)PS(0.173)K;GYADS(0.993)PS(0.007)K;GYADS(0.863)PS(0.137)K;GYADS(0.999)PS(0.001)K ;;;;;; 188.91 5.05E-06 55506870000 15199080 14155110 9089460 7628100 13210750 15877680 20513640 17953660 11402680 20344900 TRUE FALSE FALSE 14133702.98 13033407.53 12609142.34 17758602.3 11553734.55 13918853.27 15380910.3 13866003.54 12391073.48 15250404.62 0.926775606 0.854626999 0.826807069 1.164467616 0.757601837 0.912687474 1.008557523 0.90922201 0.812507851 1 23.86234418 GYADSPS(ph)K ddPTM_HeLa_A486_30min_R1 1 GYADSPSK 8 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 1 0 GYADS(0.39)PS(0.61)K 96.034 0.0029218 15463000000 1904500 1780200 1201600 1002300 1577500 2109100 2721600 2369100 1459600 2799500 TRUE FALSE FALSE 1771004.385 1639130.469 1666891.7 2333405.053 1379635.24 1848900.686 2040626.894 1829707.647 1586119.303 2098486.978 0.843943471 0.781101091 0.794330257 1.111946406 0.657442841 0.881063692 0.972427713 0.871917561 0.755839478 1 21.00091808 -11.3006654 2.251206911 1.687737791 0.855301976 0.123472704 0.117863445 8992954.215 1394605.474 31442427.93 0.029159114 5.00E-12 11.3006654 -0.832435814 GYADSPSK ddPTM_HeLa_A485_30min_R1 1 GYADSPSK 8 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 133.55 0.0019703 27955000 20622 23460 22688 21551 32097 22883 32579 32335 24166 34364 FALSE FALSE TRUE 25209.29275 26203.44293 31081.23533 22728.27656 28901.30998 24081.1185 25618.2305 24404.79055 29015.89454 25797.68722 0.977191968 1.015728375 1.204807046 0.881019929 1.12030624 0.933460364 0.99304369 0.946006917 1.1247479 1 14.65495411 -5.276746289 24.99804095 0.99952386 1.060891081 0.100642592 0.09018887 1973.1656 3222413.05 0.024439651 0.036404746 5.29E-06 5.276746289 0.061367221 GYAFITFCGK ddPTM_HeLa_A485_30min_R1 2 GYAFITFCGK 10 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 192.14 6.51E-10 89725000 79601 95296 84304 81418 124643 105964 116204 121429 71164 114811 FALSE FALSE TRUE 97307.96783 106440.0382 115491.5578 85865.65918 112233.1053 111512.1112 91376.0661 91648.34736 85445.96205 86190.73064 1.128984139 1.234936024 1.339953344 0.996228464 1.302148206 1.293783106 1.060161173 1.063320228 0.991359064 1 16.3952451 -6.877626231 5.973449403 1.028744699 1.215979252 0.48918453 0.094185962 0.192340921 9.296016705 0.040120095 0.026901526 1.33E-07 6.877626231 0.187234554 GYAFITFCGK ddPTM_HeLa_A486_30min_R1 1 GYAFITFCGK 10 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 192.14 6.51E-10 31809000 37795 42002 31062 14016 37671 36042 43374 45260 35689 43396 FALSE FALSE TRUE 35145.76567 38673.60855 43090.03827 32629.95633 32945.95191 31595.50449 32521.36644 34955.28602 38782.55126 32529.35914 1.080432157 1.188883199 1.324650697 1.003092505 1.01280667 0.971291944 0.999754293 1.074576535 1.192232257 1 14.98945478 -5.285228443 24.87564696 1.034153826 1.197078157 0.460602556 0.080182876 652.9070624 682727.806 0.023687139 0.035157888 5.19E-06 5.285228443 0.162924331 GYAFVTFCTK ddPTM_HeLa_A485_30min_R1 2 GYAFVTFCTK 10 0 O60506-3;O60506;B7Z645;O60506-4;O60506-2;O60506-5 O60506-3 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ; ; 198.58 6.69E-14 98076000 165195 175718 170225 167548 226610 208370 231160 275050 135738 237670 FALSE FALSE TRUE 201942.0578 196266.6916 233198.3112 176700.723 204047.9127 219279.931 181770.7776 207593.5562 162979.3715 178423.243 1.131814748 1.100006301 1.306995138 0.990345877 1.14361733 1.228987476 1.018761763 1.163489424 0.913442491 1 17.44494404 -7.758605647 24.99669979 0.956721206 1.134692279 0.393778884 0.088725467 67.7577615 597743.3142 0.063729931 0.021654133 1.74E-08 7.758605647 0.177971072 GYAFVTFCTK ddPTM_HeLa_A486_30min_R1 1 GYAFVTFCTK 10 0 O60506-3;O60506;B7Z645;O60506-4;O60506-2;O60506-5 O60506-3 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 168.8 8.90E-06 35121000 45765 55786 42825 20731 58063 48838 60525 56040 48409 60497 FALSE FALSE TRUE 42557.10983 51365.31419 59407.98689 48262.81569 50780.19712 42812.86411 45381.00483 43280.91534 52605.1311 45348.15743 0.9384529 1.13268801 1.310041913 1.064272915 1.119785235 0.944092694 1.000724338 0.954413978 1.160027972 1 15.46875631 -6.233852148 21.12470274 1.008307252 1.122373807 0.196413148 0.101345302 168.7422289 129211.7541 0.034052309 0.034032728 5.84E-07 6.233852148 0.114066555 GYALVPIIVNSST(ph)PK ddPTM_HeLa_A485_30min_R1 2 GYALVPIIVNSSTPK 15 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 GYALVPIIVNS(0.013)S(0.019)T(0.968)PK;GYALVPIIVNS(0.025)S(0.142)T(0.833)PK ; 125.61 0.00012883 125097000 222450 195945 167938 352150 302630 226150 328170 283270 205892 476710 TRUE FALSE FALSE 271933.2351 218859.0633 230065.2547 371387.0628 272499.0946 237990.8643 258053.7986 213797.5883 247212.6358 357874.9702 0.759855418 0.611551747 0.642864894 1.037756462 0.761436583 0.665011203 0.721072498 0.59740861 0.69077934 1 18.44909612 GYALVPIIVNSST(ph)PK ddPTM_HeLa_A486_30min_R1 2 GYALVPIIVNSSTPK 15 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 GYALVPIIVNS(0.02)S(0.183)T(0.797)PK;GYALVPIIVNS(0.03)S(0.115)T(0.856)PK ; 160.27 3.65E-11 119358000 338350 318510 202350 189452 304130 355180 426170 397550 241560 493580 TRUE FALSE FALSE 314633.4122 293270.1076 280705.3391 441053.8304 265983.1795 311361.5028 319537.7584 307036.5435 262498.6153 369984.3553 0.850396531 0.792655428 0.758695159 1.192087784 0.718903855 0.841553158 0.863652081 0.829863585 0.709485716 1 18.49710474 -10.14513649 15.19889734 0.999916483 0.84321444 0.122153381 0.128607588 0 0 0.122470096 0.029703361 7.16E-11 10.14513649 -0.156702043 GYCPAKS(ph)PK ddPTM_HeLa_A485_30min_R1 2 GYCPAKSPK 9 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 GYCPAKS(1)PK;GYCPAKS(1)PK ; 73.781 0.0060137 685800000 1061950 959340 612160 1782550 1294160 1155190 1815880 1931620 823120 2331220 TRUE FALSE FALSE 1298177.114 1071526.468 838623.4581 1879926.193 1165308.886 1215673.962 1427902.404 1457887.166 988312.6339 1750089.757 0.741777448 0.612269436 0.479188827 1.074188444 0.665856641 0.694635208 0.815902383 0.833035655 0.564721112 1 20.73899748 -14 0.240918231 2.53279459 0.698043472 0.208389964 0.15807378 283.5155093 2.829288369 213.9135132 0.24907293 1.00E-14 14 -1.834751118 GYCPAKS(ph)PK ddPTM_HeLa_A486_30min_R1 3 GYCPAKSPK 9 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2;E7ETI4;E7EMC5 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 GYCPAKS(1)PK;GY(0.001)CPAKS(0.999)PK;GYCPAKS(1)PK ;; 64.55 0.010913 1316440000 2032790 1665570 770400 1463600 1513290 2221760 3073050 2748990 1340560 3808740 TRUE FALSE FALSE 1890301.918 1533584.167 1068719.512 3407334.766 1323479.057 1947661.84 2304140.387 2123104.987 1456760.82 2855006.713 0.662100691 0.537156063 0.374331698 1.193459459 0.463564254 0.682191685 0.807052528 0.74364273 0.510247774 1 21.44506271 -14 0.250121063 2.954674493 0.640019465 0.168356458 0.218303215 340.5310685 3.379598312 341.5319492 0.313019586 1.00E-14 14 -2.314655029 GYDDRDYYSR ddPTM_HeLa_A485_30min_R1 4 GYDDRDYYSR 10 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ;;; ;;; 161.67 7.25E-07 4632560000 4640510 7371200 7782200 4991420 8435700 7245100 7840900 9074000 6787940 6645630 FALSE FALSE TRUE 5672775.44 8233197.719 10661159.62 5264088.636 7595812.088 7624442.233 6165627.661 6848587.273 8150217.295 4988996.745 1.137057354 1.650271215 2.136934572 1.055139721 1.522512937 1.528251595 1.235845196 1.372738373 1.633638527 1 22.2503183 -12.23879658 0.227565727 8.38E-13 1.54689232 0.179829164 0.294865337 112.5487716 2.310459347 54.31796872 0.555219779 5.77E-13 12.23879658 1.54689232 GYDDRDYYSR ddPTM_HeLa_A486_30min_R1 4 GYDDRDYYSR 10 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ;;; ;;; 174.4 1.76E-07 3781760000 3506200 4105660 4030210 1308200 5251840 3679430 4194310 4392920 3397820 4012420 FALSE FALSE TRUE 3260433.486 3780312.549 5590815.245 3045555.713 4593105.256 3225499.336 3144849.275 3392748.013 3692345.773 3007683.916 1.084034619 1.256884917 1.858844015 1.012591681 1.527123656 1.072419651 1.045604978 1.128026783 1.22763757 1 21.52022153 -6.28547396 24.06410849 1.099668624 1.352597638 0.237231537 0.226807251 755.5355463 756460.4099 0.078962492 0.069680519 5.18E-07 6.28547396 0.252929014 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_HeLa_A485_30min_R1 4 GYDSEDDTWEPEQHLVNCEEYIHDFNR 27 0 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR ;;; 317.93 6.88E-109 957650000 117425 125321 136026 169477 169232 90953 114843 89001 152110 193125 TRUE FALSE FALSE 143545.7861 139976.2008 186347.6779 178735.0994 152382.6679 95715.15844 90305.85487 67173.3652 182637.0818 144982.4917 0.990090489 0.965469686 1.285311597 1.232804715 1.051041861 0.660184256 0.622874209 0.463320532 1.259718188 1 17.14551916 -6.15185572 5.087742454 0.75767888 1.121141368 0.305819842 0.225213181 0.253975665 9.82680766 0.075561425 0.075676955 7.05E-07 6.15185572 0.363462489 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_HeLa_A486_30min_R1 4 GYDSEDDTWEPEQHLVNCEEYIHDFNR 27 0 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR ;;; 396.74 5.09E-188 1429120000 146149 256541 213521 80520 232364 204134 218606 200571 228505 168406 TRUE FALSE FALSE 135904.7098 236211.7569 296202.0495 187454.6293 203218.7404 178950.0226 163908.4666 154905.3617 248311.9974 126236.0415 1.07659198 1.871191097 2.346414273 1.484953323 1.609831377 1.417582653 1.298428442 1.227108835 1.967045184 1 16.94576435 -5.834551545 2.048738715 1.398801899 1.770578891 0.133852201 0.375377573 0.621808985 5.359605014 0.131688072 0.161923463 1.46E-06 5.834551545 0.371776992 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNRR ddPTM_HeLa_A485_30min_R1 4 GYDSEDDTWEPEQHLVNCEEYIHDFNRR 28 1 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR;GYDS(0.999)EDDT(0.001)WEPEQHLVNCEEYIHDFNRR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR ;;; 298.9 2.77E-92 2206190000 59772.5 61997.3 53410.5 64008.9 97738 63460.9 83313 73861 68854 76601 TRUE FALSE FALSE 73068.68641 69247.34493 73169.26655 67505.54413 88006.86154 66783.61459 65512.49695 55746.47394 82672.36623 57505.78044 1.270632028 1.204180595 1.272381072 1.173891453 1.530400264 1.161337418 1.139233247 0.969406441 1.437635758 1 15.81141936 -6.494899007 24.79601236 1.136343021 1.284832353 0.204396483 0.147212696 1071.56755 949638.8035 0.050039497 0.04402164 3.20E-07 6.494899007 0.148489332 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNRR ddPTM_HeLa_A486_30min_R1 5 GYDSEDDTWEPEQHLVNCEEYIHDFNRR 28 1 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 GY(0.029)DS(0.967)EDDT(0.004)WEPEQHLVNCEEYIHDFNRR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR;GYDS(0.991)EDDT(0.009)WEPEQHLVNCEEYIHDFNRR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR ;;;; 315.15 8.76E-109 2372229000 29757.5 39250.5 32814.3 13749.54 52212.4 47759 55085.8 54023 48098.7 35799.3 TRUE FALSE FALSE 27671.65292 36140.14743 45520.87576 32009.62398 45663.43393 41866.98016 41302.7502 41723.14221 52267.93404 26834.92227 1.031180662 1.346758044 1.696329705 1.192834608 1.701642117 1.560167745 1.539141787 1.554807642 1.947757982 1 14.71182409 -4.396207599 3.03911255 1.540503676 1.012934958 0.260531566 0.251744243 0.367892943 5.513369251 0.060725794 0.387863396 4.02E-05 4.396207599 -0.527568718 GYEEWLLNEIR ddPTM_HeLa_A485_30min_R1 1 GYEEWLLNEIR 11 0 O43707;O43707-2;A0A494C1A0;P35609;P35609-2;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 0 115.18 0.016036 27639000 20407 27283 27415 18327 33356 23679 25076 23188 22907 26004 FALSE FALSE TRUE 24946.46675 30473.50952 37556.94933 19328.1576 30034.95952 24918.79583 19718.30775 17501.10664 27504.22478 19521.68137 1.277885151 1.561008447 1.923858331 0.990086727 1.538543681 1.276467706 1.010072205 0.896495866 1.408906552 1 14.25278969 -6.197427356 1.053111822 1.069172548 1.52157435 0.313899408 0.256467865 0.60704899 1.419222961 0.137688467 0.132610091 6.35E-07 6.197427356 0.452401802 GYES(ph)PTLSK ddPTM_HeLa_A486_30min_R1 1 GYESPTLSK 9 0 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 GYES(0.814)PT(0.185)LSK 106.4 0.0011141 410390000 595840 562230 356670 201810 584490 687650 791430 837010 439090 733790 TRUE FALSE FALSE 554074.6929 517676.8472 494782.176 469823.8789 511177.814 602814.7345 593405.8431 646441.0948 477150.6747 550044.2078 1.007327566 0.941154983 0.899531654 0.854156579 0.929339509 1.095938701 1.078833 1.175252981 0.867476955 1 19.06918805 -6.246554133 21.17735464 1.056661899 0.921631787 0.329389313 0.082416768 112.9983524 160762.6214 0.026947408 0.026772138 5.67E-07 6.246554133 -0.135030112 GYFDEEMNR ddPTM_HeLa_A485_30min_R1 1 GYFDEEMNR 9 0 A0A075B730;P58107;Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 A0A075B730;P58107;Q15149;Q15149-3;Q15149-4 EPPK1;PLEC Epiplakin;Plectin 0 0 117.4 0.0077121 71633000 74434 106770 106550 68136 129370 101890 114020 120760 94810 105650 FALSE FALSE TRUE 90991.58651 119255.8227 145967.2789 71858.09715 116489.4686 107224.8028 89658.69554 91143.42066 113837.4974 79313.39934 1.147241037 1.503602465 1.840386115 0.906001984 1.46872369 1.351912839 1.130435668 1.149155394 1.43528708 1 16.275277 -9.31011902 0.1443908 0.715269717 1.539585481 0.146554378 0.244866636 37.705103 1.567408326 6.796403702 2.14435572 4.90E-10 9.31011902 0.824315763 GYFEHREDR ddPTM_HeLa_A485_30min_R1 2 GYFEHREDR 9 1 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8;M0QZV6 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 0 ; ; 145.25 0.00034275 432570000 212990 367800 372840 188601 380940 351400 366890 463110 289640 279200 FALSE FALSE TRUE 260368.8907 410811.0106 510769.0312 198903.7951 343012.276 369798.7606 288500.9543 349531.5464 347768.0913 209600.5783 1.242214563 1.959970788 2.436868425 0.94896587 1.636504435 1.764302196 1.376432053 1.667607739 1.659194331 1 17.67728317 -11.64226673 0.255724881 5.80E-16 1.716917106 0.19416546 0.382826341 81.26363107 2.349753947 46.05812669 0.566757941 2.28E-12 11.64226673 1.716917106 GYFEHREDR ddPTM_HeLa_A486_30min_R1 2 GYFEHREDR 9 1 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8;M0QZV6 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 0 ; ; 129.85 0.00084663 244110000 216720 211430 209310 67218 289990 175308 202310 217560 168283 209510 FALSE FALSE TRUE 201529.0471 194675.5168 290360.4375 156486.901 253616.7502 153680.2814 151689.8982 168026.3373 182869.9059 157047.3323 1.283237634 1.239597731 1.848872141 0.99643145 1.614906451 0.978560279 0.9658865 1.069908892 1.16442542 1 17.26083991 -6.279216151 24.93449484 1.035758643 1.39077987 0.405424492 0.218441567 824.0089771 1155788.204 0.073923845 0.06533443 5.26E-07 6.279216151 0.355021227 GYFEYIEENKYS(ph)R ddPTM_HeLa_A485_30min_R1 2 GYFEYIEENKYSR 13 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1W2PP35;Q5RI18;A0A1W2PRI6 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 GYFEYIEENKYS(1)R;GYFEYIEENKYS(1)R ; 90.725 0.00075932 130974000 96687 102026 88261 138977 138945 122560 171690 180172 91193 165727 TRUE FALSE FALSE 118194.6896 113957.0532 120912.4167 146568.9616 125111.1479 128977.0521 135007.0289 135984.5345 109494.5986 124414.3089 0.95000881 0.915948127 0.971852979 1.178071581 1.005600956 1.036673782 1.08514069 1.092997548 0.880080431 1 16.92479289 -5.012706329 24.73599522 1.046385867 0.935708957 0.265155951 0.072922952 621.2095906 1209344.944 0.019020571 0.03519078 9.71E-06 5.012706329 -0.11067691 GYGFVDFDS(ph)PAAAQK ddPTM_HeLa_A485_30min_R1 3 GYGFVDFDSPAAAQK 15 0 E7EPF2;C9J9B2;E7ETU5;F6Y5H0;C9JIJ9;A0A1B0GUW5;P29558-2;P29558;Q6XE24-3;Q6XE24-4;Q6XE24-5;Q6XE24-2;Q6XE24 E7EPF2 RBMS1;RBMS3 "RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 3" 1 0 GYGFVDFDS(1)PAAAQK;GYGFVDFDS(1)PAAAQK;GYGFVDFDS(1)PAAAQK ;; 261.39 1.93E-50 600850000 911560 976940 846570 1114510 1249620 983870 1375840 1324200 925270 1499010 TRUE FALSE FALSE 1114333.377 1091184.635 1159751.472 1175392.859 1125203.445 1035383.912 1081880.544 999437.8737 1110963.202 1125334.394 0.990224224 0.969653678 1.030583867 1.044483191 0.999883635 0.920067775 0.961385833 0.888125235 0.987229403 1 20.10192233 -6.160372308 6.091456173 0.945170826 1.009053511 0.375726374 0.035465595 0.231330834 11.69851242 0.011671348 0.011682436 6.91E-07 6.160372308 0.063882685 GYGFVDFDS(ph)PAAAQK ddPTM_HeLa_A486_30min_R1 3 GYGFVDFDSPAAAQK 15 0 E7EPF2;C9J9B2;E7ETU5;F6Y5H0;C9JIJ9;A0A1B0GUW5;P29558-2;P29558;Q6XE24-3;Q6XE24-4;Q6XE24-5;Q6XE24-2;Q6XE24 E7EPF2 RBMS1;RBMS3 "RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 3" 1 0 GYGFVDFDS(1)PAAAQK;GYGFVDFDS(1)PAAAQK;GYGFVDFDS(1)PAAAQK ;; 296.27 2.93E-67 1080520000 1256680 1409430 941270 497090 1417860 1370110 1697840 1593260 1109440 1519820 TRUE FALSE FALSE 1168593.222 1297741.634 1305754.952 1157250.642 1240018.778 1201079.758 1273022.474 1230509.479 1205607.152 1139247.18 1.025759153 1.139122095 1.146155966 1.015802946 1.088454551 1.054274946 1.117424293 1.080107549 1.058248968 1 20.11964937 -8.122727122 2.302134913 1.000147614 1.085492018 0.272829872 0.041237023 0.649793769 7.071123995 0.039496917 0.010805402 7.54E-09 8.122727122 0.085344404 GYGFVDFDS(ph)PSAAQK ddPTM_HeLa_A485_30min_R1 5 GYGFVDFDSPSAAQK 15 0 F8W1T6;Q15434 F8W1T6 RBMS2 "RNA-binding motif, single-stranded-interacting protein 2" 1 0 GYGFVDFDS(1)PSAAQK;GYGFVDFDS(0.978)PS(0.022)AAQK;GYGFVDFDS(0.986)PS(0.014)AAQK;GYGFVDFDS(0.998)PS(0.002)AAQK;GYGFVDFDS(0.974)PS(0.026)AAQK ;;;; 250.19 6.18E-42 1804140000 1909680 1820680 1686760 2316220 2399170 2050100 2729680 2737870 1872140 3102200 TRUE FALSE FALSE 2334481.728 2033592.688 2310762.716 2442749.234 2160300.211 2157440.066 2146461.569 2066403.09 2247861.326 2328878.632 1.00240592 0.873206813 0.992221185 1.048895035 0.927613909 0.926385788 0.921671718 0.887295311 0.965211881 1 21.15120403 GYGFVDFDS(ph)PSAAQK ddPTM_HeLa_A486_30min_R1 4 GYGFVDFDSPSAAQK 15 0 F8W1T6;Q15434 F8W1T6 RBMS2 "RNA-binding motif, single-stranded-interacting protein 2" 1 0 GYGFVDFDS(0.901)PS(0.099)AAQK;GYGFVDFDS(0.998)PS(0.002)AAQK;GYGFVDFDS(1)PSAAQK;GYGFVDFDS(0.999)PS(0.001)AAQK ;;; 244.44 2.34E-41 1968090000 1733450 1892280 1284900 737100 1944780 1933790 2313990 2180730 1545420 2265680 TRUE FALSE FALSE 1611944.107 1742328.841 1782447.691 1716006.051 1700847.558 1695218.651 1735005.227 1684225.384 1679378.25 1698338.981 0.949129782 1.025901696 1.0495241 1.010402558 1.001477077 0.998162717 1.021589475 0.991689764 0.988835721 1 20.69569301 -7.289750322 22.91137216 0.99269704 1.009770399 0.066043218 0.024353081 717.0712385 580300.7772 0.013564806 0.006519689 5.13E-08 7.289750322 0.017073359 GYGFVHFETQEAAER ddPTM_HeLa_A485_30min_R1 1 GYGFVHFETQEAAER 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;E5RGH3;H0YBN4 P11940 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 0 0 167.55 2.20E-08 26243000 15259 20164 21327 14946 24108 20558 22727 26516 20323 20469 FALSE FALSE TRUE 18653.31191 22522.0044 29216.74479 15762.46213 21707.72287 21634.38509 17871.19079 20012.90942 24401.63969 15366.455 1.213898189 1.465660388 1.901332792 1.025770884 1.412669537 1.407896947 1.163000235 1.30237647 1.587981072 1 13.90749676 -5.280591627 24.99885535 1.291042888 1.520833559 0.202157293 0.230272004 1402.081239 1830091.155 0.064236642 0.095459823 5.24E-06 5.280591627 0.229790671 GYGFVHFETQEAAER ddPTM_HeLa_A486_30min_R1 2 GYGFVHFETQEAAER 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;E5RGH3;H0YBN4 P11940 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 0 0 ; ; 132.08 1.37E-05 34438000 30284 33339 32334 11210.6 40476 31484 34846 34650 30634 32157 FALSE FALSE TRUE 28161.24799 30697.09622 44854.59073 26098.84335 35399.12266 27599.82419 26127.16224 26760.9514 33289.37979 24104.67789 1.168289745 1.273491243 1.860825145 1.082729397 1.468558212 1.144998672 1.083904226 1.110197428 1.381034002 1 14.55702553 -6.276751983 23.45139605 1.147156491 1.376595938 0.216263788 0.215647813 586.1580329 897702.3485 0.075298832 0.066702078 5.29E-07 6.276751983 0.229439447 GYGTVIPPQASLVFHVLLIDVHNPK ddPTM_HeLa_A485_30min_R1 2 GYGTVIPPQASLVFHVLLIDVHNPK 25 0 Q96AY3 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 0 0 ; ; 152.41 1.74E-16 16914900 25053 24171 24209 22981 25053 23253.8 37480 38161 17271 39498 FALSE FALSE TRUE 30625.95342 26997.58819 33164.91652 24236.39384 22558.63535 24471.33301 29472.09182 28801.95492 20737.13128 29651.87551 1.032850465 0.910485011 1.118476182 0.817364616 0.760782749 0.825287864 0.993936853 0.9713367 0.699353108 1 14.85583574 -5.277214404 24.94034963 0.864813741 1.009592008 0.308201806 0.105132087 1005.211823 1589239.68 0.03008275 0.044792709 5.28E-06 5.277214404 0.144778267 GYGTVIPPQASLVFHVLLIDVHNPK ddPTM_HeLa_A486_30min_R1 2 GYGTVIPPQASLVFHVLLIDVHNPK 25 0 Q96AY3 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 0 0 ; ; 140.66 7.04E-16 13996200 27576.8 31192.1 24159.3 15057.5 38506 31893.2 39711 35281 25403.4 40800 FALSE FALSE TRUE 25643.80873 28720.3244 33514.42797 35054.62096 33676.21843 27958.54125 29774.88778 27248.28648 27605.38717 30583.41444 0.838487435 0.939081686 1.095836701 1.146197101 1.101126838 0.914173311 0.973563231 0.890949784 0.90262607 1 14.90046186 -6.282928091 24.5350817 0.931778129 1.030183604 0.197975983 0.087793128 1104.004059 1260510.269 0.034327289 0.030303172 5.21E-07 6.282928091 0.098405475 GYIFLEYAS(ph)PAHAVDAVK ddPTM_HeLa_A485_30min_R1 4 GYIFLEYASPAHAVDAVK 18 0 P55884-2;P55884;C9JZG1 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 GYIFLEYAS(1)PAHAVDAVK;GYIFLEYAS(1)PAHAVDAVK;GYIFLEYAS(1)PAHAVDAVK;GYIFLEYAS(1)PAHAVDAVK ;;; 249.5 4.53E-46 721719000 749136 903360 769387 988440 1154680 981000 1257140 1423910 831873 1373530 TRUE FALSE FALSE 915778.7187 1009000.094 1054015.268 1042435.974 1039716.005 1032363.643 988541.7691 1074693.84 998822.2807 1031134.249 0.888127535 0.978534167 1.022190146 1.010960479 1.008322637 1.001192274 0.958693565 1.042244345 0.968663665 1 19.97580075 -4.291390077 3.200951287 1.002075014 0.875368144 0.688930642 0.022769293 0.161561226 2.684383153 0.005518084 0.049049882 5.11E-05 4.291390077 -0.126706871 GYIFLEYAS(ph)PAHAVDAVK ddPTM_HeLa_A486_30min_R1 2 GYIFLEYASPAHAVDAVK 18 0 P55884-2;P55884;C9JZG1 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 GYIFLEYAS(1)PAHAVDAVK;GYIFLEYAS(1)PAHAVDAVK ; 175.85 6.24E-13 611350000 488990 458840 311670 293210 505170 585340 687710 646190 415550 767660 TRUE FALSE FALSE 454714.3261 422479.8473 432356.9708 682607.698 441806.8681 513126.7021 515637.6841 499066.6432 451570.2086 575432.9394 0.790212543 0.734194757 0.75135944 1.186250649 0.767781679 0.891722852 0.896086492 0.867288973 0.784748626 1 19.13428828 GYIFLEYASPAHAVDAVK ddPTM_HeLa_A486_30min_R1 1 GYIFLEYASPAHAVDAVK 18 0 P55884-2;P55884;C9JZG1 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 0 62.709 0.015658 12546000 14423 26159 32154 3741.1 39025 22020 19982 23135 20569 12769 FALSE FALSE TRUE 13412.02218 24086.06557 44604.88991 8709.469865 34130.12061 19303.39628 14982.29225 17867.66553 22351.93748 9571.559288 1.401236912 2.516420245 4.660148736 0.909932186 3.565784799 2.016745203 1.565292739 1.866745532 2.335245158 1 13.22453826 -6.506224015 24.00143682 1.767902225 2.64148005 0.152510681 1.021950878 869.2743742 1252731.588 0.357591545 0.30710407 3.12E-07 6.506224015 0.873577825 GYIPIYTPFFMR ddPTM_HeLa_A485_30min_R1 1 GYIPIYTPFFMR 12 0 Q5T5C7;P49591 Q5T5C7 SARS "Serine--tRNA ligase, cytoplasmic" 0 0 121.73 0.0019653 11389000 3939.6 5849.5 6045.6 3837.3 6364.8 4798.4 6015.7 5668.2 5072.4 6134.6 FALSE FALSE TRUE 4815.950429 6533.548141 8282.119018 4046.921982 5731.098164 5049.636804 4730.396551 4278.065063 6090.384153 4605.357119 1.0457279 1.418684365 1.798366295 0.878742273 1.24444164 1.096470192 1.027150866 0.928932318 1.322456434 1 12.16909732 -5.281715917 24.99667763 1.074649015 1.420702093 0.367810569 0.210094191 844.1352796 1040638.072 0.058847128 0.087401283 5.23E-06 5.281715917 0.346053078 GYIPIYTPFFMR ddPTM_HeLa_A486_30min_R1 1 GYIPIYTPFFMR 12 0 Q5T5C7;P49591 Q5T5C7 SARS "Serine--tRNA ligase, cytoplasmic" 0 0 90.629 0.010829 0 4755.5 5117.5 5745 4746.7 7926.1 5880.7 6052.8 5999.6 4391.1 7031.3 FALSE FALSE TRUE 4422.164007 4711.970662 7969.617856 11050.55748 6931.93463 5155.199025 4538.32542 4633.62205 4771.724084 5270.616714 0.83902212 0.89400746 1.512084503 2.096634623 1.315203705 0.978101673 0.861061554 0.879142291 0.905344544 1 12.36375607 -6.282746672 4.517274105 0.907457846 1.361852771 0.278466257 0.326859524 0.299538661 15.79925138 0.131355385 0.120131021 5.21E-07 6.282746672 0.454394925 GYISPYFINTS(ph)K ddPTM_HeLa_A486_30min_R1 1 GYISPYFINTSK 12 0 P10809;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 GYISPYFINT(0.005)S(0.995)K 95.428 0.0015845 105320000 144720 123310 77373 98377 145130 142750 152950 153170 124580 207360 TRUE FALSE FALSE 134575.8753 113538.4665 107333.8977 229026.6277 126926.4421 125138.9564 114680.2923 118296.5347 135378.6947 155435.7063 0.865797689 0.730452926 0.690535658 1.473449268 0.816584845 0.805085005 0.737798894 0.761064092 0.87096265 1 17.24595843 -5.937588498 25 0.813592865 0.936981616 0.055501518 0.210444718 203.7268772 81604.30274 0.068060618 0.077173482 1.15E-06 5.937588498 0.123388751 GYISPYFINTSK ddPTM_HeLa_A485_30min_R1 2 GYISPYFINTSK 12 0 P10809;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 212.82 3.12E-20 74400000 54983 70202 53427 55376 74492 67990 80518 84542 59437 93400 FALSE FALSE TRUE 67213.77866 78411.51322 73191.87058 58401.05066 67075.31492 71549.85127 63314.67153 63807.94194 71365.46071 70117.0989 0.958593263 1.118293747 1.043851952 0.832907402 0.956618514 1.020433709 0.902984757 0.910019709 1.017803957 1 16.09747869 -5.050878305 24.99260222 0.945735355 1.049101027 0.289031378 0.065306568 374.0575058 183745.2203 0.017319317 0.029998473 8.89E-06 5.050878305 0.103365672 GYKDDKSDRGPT(ph)PTK ddPTM_HeLa_A485_30min_R1 1 GYKDDKSDRGPTPTK 15 3 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 GYKDDKS(0.475)DRGPT(0.515)PT(0.01)K 70.942 0.003737 400640000 288460 208870 140620 373460 306110 383450 582690 540570 229510 574690 TRUE FALSE FALSE 352626.9318 233295.5296 192641.1897 393861.1741 275632.6136 403526.8491 458193.5214 407994.3599 275570.5518 431430.3594 0.817343806 0.540748986 0.446517463 0.912919468 0.638880894 0.935323257 1.062033562 0.945678372 0.638737043 1 18.71876818 -5.841720287 1.38455045 0.915145143 0.618046776 0.341275073 0.163333448 0.465600825 1.864576648 0.065633232 0.085126473 1.44E-06 5.841720287 -0.297098367 GYNHGQGSYSYSNSYNS(ph)PGGGGGSDYNYESK ddPTM_HeLa_A485_30min_R1 2 GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 31 0 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK ; 356.48 4.39E-148 2178000000 662460 679260 760860 592810 963170 619960 788570 620630 793640 997030 TRUE FALSE FALSE 809821.9415 758693.5482 1042333.776 625193.7092 867273.4129 652420.147 620085.5775 468419.5194 952916.2683 748488.77 1.081942674 1.013633843 1.392584388 0.835274669 1.158699299 0.871649881 0.828450075 0.625820371 1.273120328 1 19.51362115 -6.269574004 24.5404539 0.890712013 1.093772085 0.155787372 0.19986866 796.6897899 2403438.289 0.067542056 0.060637674 5.38E-07 6.269574004 0.203060073 GYNHGQGSYSYSNSYNS(ph)PGGGGGSDYNYESK ddPTM_HeLa_A486_30min_R1 3 GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 31 0 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;GYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK ;; 253.99 1.70E-63 2428220000 495259 590187 413426 33970.9 625838 467835 531755 512387 462760 328629 TRUE FALSE FALSE 460543.9016 543418.4327 573515.6191 79085.97199 547339.5623 410118.2743 398704.2747 395727.6654 502872.4094 246338.1594 1.869559725 2.205985601 2.328163938 0.321046371 2.221903272 1.664858889 1.618524209 1.606440782 2.041390626 1 17.9102806 -11.04467925 2.480533042 0.028129711 1.752957157 0.150930178 0.543182031 11855952.13 3949836.62 65449714.82 0.13393066 9.02E-12 11.04467925 1.724827446 GYNVNDEK ddPTM_HeLa_A485_30min_R1 1 GYNVNDEK 8 0 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 0 0 152.47 3.24E-05 0 22367 19729 14762 25166 19895 22655 29066 26222 21791 51350 FALSE FALSE TRUE 27342.46198 22036.13493 20223.0781 26540.75486 17914.18394 23841.18077 22855.81165 19791.01339 26164.25382 38549.39003 0.709283907 0.571633816 0.524601766 0.688487025 0.464707326 0.618458055 0.592896843 0.513393685 0.678720307 1 15.23442041 -8.093303993 5.675189101 0.999988616 0.58411229 0.752800241 0.071280329 0.386930753 23.05553749 0.06498108 0.016882146 8.07E-09 8.093303993 -0.415876326 GYPHWPAR ddPTM_HeLa_A485_30min_R1 3 GYPHWPAR 8 0 P51858;H3BPQ6;M0R0J3;Q9Y3E1;Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;O75475;O75475-3;O75475-2 P51858;Q7Z4V5-2;O75475 HDGF;HDGFRP3;HDGFRP2;PSIP1 Hepatoma-derived growth factor;Hepatoma-derived growth factor-related protein 3;Hepatoma-derived growth factor-related protein 2;PC4 and SFRS1-interacting protein 0 0 ;; ;; 101.69 0.0067725 568420200 206997.6 237141.9 311518 255218.7 356053 225198 278725 271784 280978 334485 FALSE FALSE TRUE 253043.502 264873.5823 426761.4715 269160.6513 320603.1131 236989.0191 219173.1268 205128.5479 337367.7073 251104.0452 1.007723718 1.054835983 1.699540408 1.071908862 1.276773988 0.943788137 0.872837897 0.816906584 1.343537524 1 17.93792574 -6.263243735 24.99999994 0.976309674 1.231035234 0.201541416 0.223699684 254.8766354 3531389.68 0.077596925 0.071987184 5.45E-07 6.263243735 0.254725559 GYPHWPAR ddPTM_HeLa_A486_30min_R1 1 GYPHWPAR 8 0 P51858;H3BPQ6;M0R0J3;Q9Y3E1;Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;O75475;O75475-3;O75475-2 P51858;Q7Z4V5-2;O75475 HDGF;HDGFRP3;HDGFRP2;PSIP1 Hepatoma-derived growth factor;Hepatoma-derived growth factor-related protein 3;Hepatoma-derived growth factor-related protein 2;PC4 and SFRS1-interacting protein 0 0 119.89 0.010173 0 91500 118050 115740 39244 159140 112790 117750 121700 100790 96736 FALSE FALSE TRUE 85086.32251 108695.2881 160557.6276 91362.01528 139179.1773 98875.11656 88287.70457 93991.56669 109526.5584 72512.67595 1.17339929 1.498983269 2.214200835 1.259945438 1.919377205 1.363556306 1.217548565 1.296208773 1.510447062 1 16.14594559 -6.500939073 22.91397254 1.28213754 1.62268915 0.237672531 0.303768656 405.2457045 423243.3106 0.106133329 0.092616791 3.16E-07 6.500939073 0.340551611 GYPTLLLFR ddPTM_HeLa_A485_30min_R1 2 GYPTLLLFR 9 0 Q8NBS9-2;Q8NBS9 Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 0 0 ; ; 157.58 1.45E-05 30881000 29848 36572 41377 25342 41173 39720 47637 52890 30401 43542 FALSE FALSE TRUE 36487.58463 40848.77727 56684.07414 26726.36929 37073.67155 41799.67778 37458.96579 39918.64457 36502.20185 32687.78073 1.116245392 1.249665054 1.734105922 0.81762569 1.13417524 1.278755451 1.145962343 1.221209996 1.116692569 1 14.99646381 -13.9999995 0.074712191 0.266565568 1.447138008 0.094539389 0.212425948 710.8275 3.78704202 86.83227234 9.420062753 1.00E-14 13.9999995 1.18057244 GYPTLLWFR ddPTM_HeLa_A485_30min_R1 2 GYPTLLWFR 9 0 Q8NBS9-2;Q8NBS9 Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 0 0 ; ; 172.15 2.31E-06 52753000 38765 47684 50964 34650 50013 48921 58981 63748 39717 50397 FALSE FALSE TRUE 47388.14051 53260.229 69817.70439 36542.84176 45033.53011 51482.42791 46379.22752 48113.70305 47687.83759 37833.95539 1.252529375 1.407736211 1.845371537 0.96587421 1.190294001 1.360746646 1.22586251 1.271706924 1.260450754 1 15.20739399 -12.5775314 0.060529258 8.46E-08 1.839015188 0.204129228 0.205710091 494.9283913 2.855304245 85.50550412 20.74064597 2.65E-13 12.5775314 1.839015104 GYPTLLWFR ddPTM_HeLa_A486_30min_R1 1 GYPTLLWFR 9 0 Q8NBS9-2;Q8NBS9 Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 0 0 174.27 5.36E-07 21291000 17537 19569 18067 7273.5 23121 17238 20143 19824 17120 19657 FALSE FALSE TRUE 16307.74686 18018.28117 25063.02625 16933.07558 20220.94859 15111.35082 15103.00835 15310.50795 18603.97538 14734.75925 1.106753533 1.222841911 1.700945758 1.149192551 1.372329757 1.02555804 1.024991864 1.039074184 1.262591065 1 13.84693587 -6.262778113 24.9863064 1.070044464 1.318287268 0.340088144 0.166956834 144.5960735 2698741.343 0.057956155 0.053900029 5.46E-07 6.262778113 0.248242804 GYRDDRS(ph)PAREPGDVSAR ddPTM_HeLa_A485_30min_R1 2 GYRDDRSPAREPGDVSAR 18 3 A0A1W2PR91;A0A1W2PQT1;C9J366;P0DPB3-2;P0DPB3;B3KU38-2;B3KU38 A0A1W2PR91 IQCJ-SCHIP1 1 0 GYRDDRS(1)PAREPGDVSAR;GYRDDRS(1)PAREPGDVSAR ; 228.29 5.38E-34 6131700000 416860 681240 687720 457790 756440 621230 669100 855250 549560 586140 TRUE FALSE FALSE 509589.0689 760905.092 942136.2464 482797.9085 681126.1776 653756.6422 526141.319 645498.5965 659851.6511 440026.0851 1.158088318 1.729227238 2.141091809 1.097202927 1.547922272 1.48572247 1.195704838 1.466955297 1.499573942 1 18.74722952 -5.286382762 24.99801323 1.357314615 1.681445167 0.238630589 0.2817781 1138.432016 1140922.865 0.078877775 0.11704962 5.17E-06 5.286382762 0.324130553 GYRDDRS(ph)PAREPGDVSAR ddPTM_HeLa_A486_30min_R1 3 GYRDDRSPAREPGDVSAR 18 3 A0A1W2PR91;A0A1W2PQT1;C9J366;P0DPB3-2;P0DPB3;B3KU38-2;B3KU38 A0A1W2PR91 IQCJ-SCHIP1 1 0 GYRDDRS(1)PAREPGDVSAR;GYRDDRS(1)PAREPGDVSAR;GYRDDRS(1)PAREPGDVSAR ;; 186.92 3.69E-17 7154300000 1112750 1242820 1442230 501673 1792510 1113930 1400620 1423570 1102840 1298170 TRUE FALSE FALSE 1034751.971 1144334.417 2000700.08 1167920.097 1567676.681 976504.6422 1050170.062 1099454.187 1198435.059 973099.7823 1.063356492 1.175968218 2.056007119 1.200205897 1.611013289 1.003498983 1.079200798 1.129847326 1.23156441 1 19.89222822 -6.270888177 24.6372557 1.096336409 1.430657463 0.278511871 0.267222329 788.4879445 2055935.766 0.094923538 0.084838965 5.36E-07 6.270888177 0.334321054 GYS(ph)DRDGYGR ddPTM_HeLa_A485_30min_R1 3 GYSDRDGYGR 10 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 GY(0.001)S(0.999)DRDGYGR;GY(0.003)S(0.997)DRDGYGR;GY(0.042)S(0.957)DRDGY(0.001)GR ;; 81.709 0.0013211 217530000 628037 616335 466238 1058447 625563 605655 725884 1120467 564023 1242046 TRUE FALSE FALSE 767741.6639 688410.0168 638718.838 1116267.279 563279.7512 637366.1593 570792.9535 845670.7114 677217.2426 932426.7904 0.8233801 0.738299268 0.685006957 1.197163457 0.60410078 0.683556249 0.612158466 0.906956686 0.726295351 1 19.83063093 -10.36502947 2.756223663 1.003986398 0.775235107 0.142400427 0.165492746 21006581.93 23833586.32 671908.2881 0.043775315 4.31E-11 10.36502947 -0.22875129 GYS(ph)FSLTTFSPSGK ddPTM_HeLa_A486_30min_R1 1 GYSFSLTTFSPSGK 14 0 P25787;A0A024RA52;H3BT36 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 1 0 GY(0.002)S(0.994)FS(0.004)LTTFSPSGK 70.622 0.010147 35964000 54893 73690 71832 38046 99712 60243 79440 84995 55370 65163 TRUE FALSE FALSE 51045.28417 67850.53603 99647.27413 88573.01074 87205.19118 52810.83117 59563.27177 65643.49393 60169.51618 48845.76066 1.045029978 1.389077273 2.040039356 1.813320328 1.785317497 1.081175325 1.219415379 1.34389337 1.231826782 1 15.57594574 -6.263848783 24.99736892 1.199515075 1.636710574 0.404109691 0.265226903 250.5251242 2599162.793 0.099298985 0.091718102 5.45E-07 6.263848783 0.437195499 GYS(ph)FTTTAER ddPTM_HeLa_A485_30min_R1 1 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 GYS(0.971)FT(0.022)T(0.007)TAER 83.081 0.0034727 0 206990 449270 497780 215910 497720 337260 352090 389720 393580 284680 TRUE FALSE FALSE 253034.2114 501808.2184 681929.5364 227704.6166 448165.2492 354918.4121 276863.0952 294140.5589 472567.8959 213714.5151 1.183982338 2.348030587 3.190843335 1.065461634 2.097027658 1.660712712 1.295481007 1.376324667 2.211211043 1 17.70532537 -5.287820995 24.99051864 1.564508474 2.251660489 0.235717175 0.584623972 1083.384223 1026255.075 0.163812796 0.243051464 5.15E-06 5.287820995 0.687152015 GYS(ph)FTTTAER ddPTM_HeLa_A486_30min_R1 2 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 GYS(0.928)FT(0.068)T(0.003)TAER;GYS(1)FTTTAER ; 126.19 0.00010815 574720000 407580 491840 547700 159357 699840 385410 398370 445980 526680 333520 TRUE FALSE FALSE 379010.7467 452864.8071 759784.1079 370991.1495 612059.5415 337862.0328 298693.6125 344440.0897 572333.0465 250004.4211 1.516016177 1.811427194 3.039082687 1.483938355 2.44819487 1.351424232 1.194753321 1.377735994 2.289291701 1 17.93159408 -6.278727753 24.61591712 1.450756518 2.068357016 0.254523013 0.52785254 997.1171539 1419732.857 0.184116954 0.162775552 5.26E-07 6.278727753 0.617600498 GYSDRDGYGR ddPTM_HeLa_A485_30min_R1 6 GYSDRDGYGR 10 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 0 0 ;;;;; ;;;;; 164.43 6.06E-07 2156376000 650788 1335018 1278463 499315 1316669 1278109 1388700 1856300 977312 827401 FALSE FALSE TRUE 795553.5454 1491136.742 1751419.665 526591.3141 1185576.811 1345028.811 1091992.9 1401039.514 1173449.554 621145.1579 1.280785232 2.400625237 2.81966243 0.847774964 1.908695248 2.165401748 1.758031736 2.25557504 1.889171217 1 19.24457093 -8.056698751 20.724475 0.999999994 1.948580951 0.215412201 0.529151058 3623.456152 1324443.35 0.508113623 0.131194373 8.78E-09 8.056698751 0.948580957 GYSDRDGYGR ddPTM_HeLa_A486_30min_R1 4 GYSDRDGYGR 10 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 0 0 ;;; ;;; 157.97 1.62E-06 761650000 545353 526259 586459 190256 796480 414302 574095 634791 428081 569457 FALSE FALSE TRUE 507126.5709 484556.3202 813551.6307 442925.583 696578.0515 363189.6316 430450.3588 490262.9467 465187.4058 426861.2607 1.188036061 1.135161152 1.905892396 1.037633592 1.63186055 0.850837649 1.008408114 1.14852996 1.089785953 1 18.70340771 -6.269381065 24.9973998 1.028101447 1.376357691 0.348732586 0.245961705 731.0189059 2300961.822 0.083961998 0.075362243 5.38E-07 6.269381065 0.348256243 GYSFSLTTFS(ph)PSGK ddPTM_HeLa_A485_30min_R1 2 GYSFSLTTFSPSGK 14 0 P25787;A0A024RA52;H3BT36 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 1 0 GYSFSLTTFS(1)PSGK;GYSFSLTT(0.002)FS(0.981)PS(0.016)GK ; 290.32 8.08E-58 344420000 294050 318690 284450 340150 427090 381400 498400 530390 284200 470760 TRUE FALSE FALSE 359460.408 355958.0233 389679.892 358731.5332 384567.42 401369.5142 391912.7684 400311.0209 341236.3332 353408.1957 1.017125274 1.007214964 1.102633999 1.015062858 1.088167803 1.135710827 1.108952122 1.132715726 0.96555863 1 18.43097597 -4.748961557 24.67800202 1.075964829 1.012170072 0.132726118 0.055187782 333.6501127 659862.7879 0.013875884 0.036141959 1.78E-05 4.748961557 -0.063794758 GYSFSLTTFS(ph)PSGK ddPTM_HeLa_A486_30min_R1 2 GYSFSLTTFSPSGK 14 0 P25787;A0A024RA52;H3BT36 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 1 0 GYSFSLTTFS(0.995)PS(0.005)GK;GYSFSLTTFS(0.996)PS(0.004)GK ; 275.83 6.49E-49 266320000 304090 352620 255509 161771 360000 356050 440190 417270 282198 422550 TRUE FALSE FALSE 282774.8613 324677.107 354448.9276 376611.0635 314845.4431 312124.1711 330049.8061 322266.7299 306659.1499 316740.7297 0.892764444 1.025056384 1.119050676 1.189020003 0.994016284 0.985424803 1.042018835 1.017446447 0.968170876 1 18.27294287 GYSFSLTTFSPSGK ddPTM_HeLa_A485_30min_R1 2 GYSFSLTTFSPSGK 14 0 P25787;A0A024RA52;H3BT36 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 0 0 ; ; 293.62 5.61E-65 77819000 111535 125453 125642 119266 167395 165529 193397 225633 116881 173095 FALSE FALSE TRUE 136345.576 140123.6371 172122.2042 125781.1996 150728.566 174195.8425 152076.151 170296.153 140337.9446 129945.6021 1.049251177 1.078325352 1.324571216 0.967952725 1.159935878 1.340528957 1.170306256 1.310518788 1.079974561 1 16.98754828 -4.549710779 24.99008115 1.18045017 1.056519455 0.101557294 0.123167885 363.3173072 338375.3676 0.030409 0.080458175 2.82E-05 4.549710779 -0.123930715 GYSFSLTTFSPSGK ddPTM_HeLa_A486_30min_R1 2 GYSFSLTTFSPSGK 14 0 P25787;A0A024RA52;H3BT36 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 0 0 ; ; 265.6 1.58E-40 79281000 82724 96302 79428 29076.9 102884 101053 116712 114236 95373 120296 FALSE FALSE TRUE 76925.47479 88670.67879 110184.6488 67692.49267 89979.32936 88586.10829 87509.42315 88226.95655 103640.0084 90173.0986 0.853086741 0.983338492 1.221923727 0.750694982 0.997851141 0.982400623 0.97046042 0.978417709 1.149345093 1 16.46040948 -7.646815064 8.950059262 1.074119592 0.970196494 0.11825873 0.117265772 0.561922149 40.98624497 0.078011241 0.029269882 2.26E-08 7.646815064 -0.103923098 GYSFTTTAER ddPTM_HeLa_A485_30min_R1 7 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;; ;;;;;; 229.44 8.98E-21 3394110000 1542303 1996882 2287492 1597602 2333340 1980784 2205270 2262440 2005249 2236070 FALSE FALSE TRUE 1885382.981 2230399.979 3133730.481 1684874.952 2101024.477 2084494.787 1734096.049 1707573.043 2407684.081 1678658.901 1.123148354 1.328679685 1.866805984 1.003702986 1.251608934 1.241761972 1.033024665 1.017224549 1.434290242 1 20.67887768 GYSFTTTAER ddPTM_HeLa_A486_30min_R1 8 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;;; ;;;;;;; 220.88 9.74E-20 3355640000 1963967 2361463 2246043 1144003 3484080 2212608 2567549 2746423 2124188 2543927 FALSE FALSE TRUE 1826303.055 2174332.072 3115771.001 2663296.799 3047074.199 1939638.921 1925121.083 2121122.437 2308314.326 1906911.121 0.957728462 1.140237763 1.633936142 1.39665492 1.59791097 1.01716273 1.009549455 1.11233419 1.210499168 1 20.86280617 -6.290122292 24.90176896 1.073157486 1.352790798 0.335270646 0.193709764 888.3227905 771216.0381 0.073361309 0.064709214 5.13E-07 6.290122292 0.279633312 GYT(ph)SDDDTWEPEIHLEDCK ddPTM_HeLa_A486_30min_R1 2 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GYT(0.5)S(0.5)DDDTWEPEIHLEDCK;GY(0.147)T(0.376)S(0.376)DDDT(0.101)WEPEIHLEDCK ; 136.02 2.40E-06 121433000 101144 159764 108908 56430 156284 170204 193520 164325 132945 154310 TRUE FALSE FALSE 94054.32791 147103.7188 151080.0943 131371.8918 136681.4034 149205.961 145099.2492 126911.7847 144468.7796 115669.7716 0.813127981 1.271755937 1.3061329 1.135749557 1.181651883 1.289930454 1.254426694 1.097190588 1.248976095 1 16.81965236 -4.255651604 24.92044067 1.20695389 0.813127804 0.608531313 0.092481663 393.1926079 1692920.053 0.022036564 0.190944113 5.55E-05 4.255651604 -0.393826086 GYT(ph)SDSEVYTDHGRPGK ddPTM_HeLa_A485_30min_R1 3 GYTSDSEVYTDHGRPGK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.5)S(0.5)DSEVYTDHGRPGK;GYT(0.5)S(0.5)DSEVYTDHGRPGK;GYT(0.55)S(0.432)DS(0.018)EVYTDHGRPGK ;; 167.97 5.66E-12 25637000000 2412160 2538400 2047990 2619490 3049470 2621520 3402790 3452600 2246190 3351300 TRUE FALSE FALSE 2948736.67 2835243.799 2805626.725 2762586.106 2745854.059 2758778.734 2675756.118 2605844.437 2696979.73 2515882.586 1.172048603 1.126938043 1.115166002 1.098058439 1.091407872 1.096545105 1.063545705 1.035757571 1.071981556 1 21.26263316 -1 0.119995559 0.969237269 1.580718412 0.908482952 0.013805125 25.86055467 0.21377899 0.095709336 2.643569894 0.1 1 0.611481143 GYT(ph)SDSEVYTDHGRPGK ddPTM_HeLa_A486_30min_R1 5 GYTSDSEVYTDHGRPGK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.499)S(0.499)DS(0.002)EVYTDHGRPGK;GYT(0.572)S(0.428)DSEVYTDHGRPGK;GYT(0.5)S(0.5)DSEVYTDHGRPGK;GYT(0.496)S(0.496)DS(0.007)EVYTDHGRPGK;GYT(0.582)S(0.418)DSEVYTDHGRPGK ;;;; 174.65 2.05E-12 31413410000 2626230 2806120 1957356 790895 2889240 2836830 3354020 3142870 2284800 2782620 TRUE FALSE FALSE 2442144.839 2583752.831 2715296.663 1841243.53 2526844.578 2486850.757 2514808.721 2427307.109 2482848.304 2085833.84 1.170824249 1.2387146 1.301779946 0.882737395 1.211431385 1.192257365 1.205661099 1.163710677 1.19033849 1 20.99219281 -10.63860018 2.481319173 0.97813638 1.172607594 0.199021235 0.104145582 9692235.879 7918897.118 1356338.258 0.028167595 2.30E-11 10.63860018 0.194471213 GYTS(ph)DDDTWEPEIHLEDCK ddPTM_HeLa_A485_30min_R1 4 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GYT(0.141)S(0.859)DDDTWEPEIHLEDCK;GYT(0.111)S(0.889)DDDTWEPEIHLEDCK;GYT(0.144)S(0.856)DDDTWEPEIHLEDCK;GYT(0.029)S(0.97)DDDT(0.001)WEPEIHLEDCK ;;; 305.83 6.63E-80 1358020000 1189800 768840 867500 1944510 1347760 887170 1353140 1041210 1035430 2569280 TRUE FALSE FALSE 1454466.905 858749.15 1188424.35 2050733.658 1213572.282 933620.8494 1064030.585 785851.6149 1243231.303 1928805.78 0.754076393 0.445223235 0.616145162 1.063214181 0.629183246 0.484040881 0.551652528 0.407429106 0.64456013 1 20.87927645 -8.048894437 22.22405552 1.000000003 0.615448234 0.291974802 0.177055793 4778.391316 2171926.927 0.182033778 0.047000919 8.94E-09 8.048894437 -0.384551769 GYTS(ph)DDDTWEPEIHLEDCK ddPTM_HeLa_A486_30min_R1 4 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GYT(0.125)S(0.874)DDDT(0.002)WEPEIHLEDCK;GYT(0.022)S(0.978)DDDTWEPEIHLEDCK;GYT(0.107)S(0.893)DDDTWEPEIHLEDCK;GYT(0.123)S(0.877)DDDTWEPEIHLEDCK ;;; 354.56 6.41E-116 1871150000 1245490 2113000 1428790 910950 1935000 2391580 2662140 2272990 2010430 2233220 TRUE FALSE FALSE 1158187.583 1945558.185 1982055.752 2120737.637 1692294.257 2096531.175 1996044.415 1755479.796 2184695.691 1674007.176 0.691865363 1.162216156 1.184018671 1.26686293 1.010924135 1.252402741 1.192375065 1.048669218 1.30506949 1 20.67487428 -4.261451979 10.24004793 1.163276843 0.69087433 0.654644898 0.10151905 0.039965821 156.8687093 0.02332271 0.130854746 5.48E-05 4.261451979 -0.472402513 GYTS(ph)DSEVYTDHGRPGK ddPTM_HeLa_A485_30min_R1 6 GYTSDSEVYTDHGRPGK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.016)S(0.983)DSEVYTDHGRPGK;GYT(0.029)S(0.971)DSEVYTDHGRPGK;GYT(0.431)S(0.566)DS(0.003)EVYTDHGRPGK;GYT(0.314)S(0.682)DS(0.004)EVYTDHGRPGK;GYT(0.014)S(0.986)DSEVYTDHGRPGK;GYT(0.015)S(0.985)DS(0.001)EVYTDHGRPGK ;;;;; 242.16 9.76E-43 44865570000 4327310 4801180 4341120 4701520 6043500 4737430 6158110 6376570 4588710 6141790 TRUE FALSE FALSE 5289905.18 5362636.236 5947080.937 4958352.133 5441787.92 4985474.509 4842379.491 4812706.209 5509622.007 4610754.784 1.147297011 1.16307123 1.289828068 1.075388383 1.180237982 1.081270799 1.050235746 1.043800079 1.194950125 1 22.13657151 -5.989146603 1.326502312 1.074210414 1.186578931 0.330324365 0.068066554 0.512803842 1.871016647 0.028542928 0.032583275 1.03E-06 5.989146603 0.112368517 GYTS(ph)DSEVYTDHGRPGK ddPTM_HeLa_A486_30min_R1 4 GYTSDSEVYTDHGRPGK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.001)S(0.877)DS(0.109)EVYT(0.012)DHGRPGK;GYT(0.289)S(0.71)DS(0.001)EVYTDHGRPGK;GYT(0.081)S(0.899)DS(0.02)EVYTDHGRPGK;GYT(0.099)S(0.9)DS(0.001)EVYTDHGRPGK ;;; 233.38 8.04E-36 19214050000 2848860 3190330 2118660 880781 3101390 2869920 3328360 3460450 2413100 3182840 TRUE FALSE FALSE 2649169.626 2937516.632 2939061.892 2050502.68 2712384.747 2515858.45 2495569.124 2672581.076 2622269.451 2385836.147 1.110373664 1.231231506 1.231879186 0.859448241 1.136869667 1.054497583 1.045993509 1.120186346 1.099098718 1 21.18606354 GYYS(ph)PGIVSTR ddPTM_HeLa_A485_30min_R1 4 GYYSPGIVSTR 11 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 GYY(0.006)S(0.994)PGIVSTR;GYYS(1)PGIVSTR;GYYS(1)PGIVSTR;GYYS(1)PGIVSTR ;;; 170.66 3.33E-08 1678490000 1338390 1766090 1941630 1361070 2134930 1651550 1942200 2188770 1676610 1879210 TRUE FALSE FALSE 1636110.238 1972618.863 2659919.735 1435421.808 1922368.873 1738022.604 1527233.104 1651970.726 2013090.248 1410757.531 1.159738794 1.398269241 1.885454925 1.017483002 1.362650087 1.231978257 1.082562432 1.170981327 1.426956939 1 20.42803862 -5.304447834 24.99993083 1.196917038 1.472867267 0.294053307 0.209804873 609.2937099 354168.6498 0.058850153 0.087289537 4.96E-06 5.304447834 0.275950229 GYYS(ph)PGIVSTR ddPTM_HeLa_A486_30min_R1 4 GYYSPGIVSTR 11 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 GYYS(1)PGIVSTR;GYYS(1)PGIVSTR;GYYS(1)PGIVSTR;GYYS(1)PGIVSTR ;;; 196.7 2.96E-12 1294810000 1348220 1543180 1438940 538530 1634730 1352900 1612040 1651720 1225360 1567660 TRUE FALSE FALSE 1253716.74 1420892.797 1996136.104 1253725.056 1429686.92 1185992.953 1208690.542 1275659.413 1331575.191 1175107.732 1.06689515 1.209159601 1.69868349 1.066902226 1.216643275 1.009263169 1.028578494 1.085568053 1.133151587 1 20.1643616 GYYS(ph)PYSVS(ph)GSGS(ph)TAGSR ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 GY(0.001)Y(0.007)S(0.991)PY(0.002)S(0.01)VS(0.986)GS(0.156)GS(0.42)T(0.318)AGS(0.109)R 97.776 0.00035514 185750000 176870 252470 256960 165840 253610 227220 227420 241140 193330 211700 TRUE FALSE FALSE 216214.1213 281994.1703 352020.197 174899.4193 228359.6979 239116.8879 178829.8591 182000.0369 232129.5577 158927.086 1.360461119 1.774361925 2.214979245 1.100501014 1.436883439 1.504569761 1.125232102 1.145179475 1.460604126 1 17.2780055 -5.281071826 24.98477249 1.272115597 1.782376945 0.485234828 0.24962361 688.4313633 876114.4879 0.070928822 0.105372716 5.24E-06 5.281071826 0.510261348 GYYS(ph)PYSVS(ph)GSGSTAGSR ddPTM_HeLa_A485_30min_R1 3 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GY(0.001)Y(0.023)S(0.856)PY(0.119)S(0.068)VS(0.826)GS(0.095)GS(0.01)T(0.002)AGSR;GYYS(0.996)PY(0.004)SVS(0.999)GS(0.001)GSTAGSR;GYYS(0.937)PY(0.062)S(0.003)VS(0.997)GSGSTAGSR ;; 225.17 3.01E-34 1612030000 934330 1608500 1663400 1067390 1667230 1536170 1375250 1498220 1357320 1498720 TRUE FALSE FALSE 1142168.485 1796600.083 2278760.88 1125698.813 1501234.727 1616601.486 1081416.603 1130779.196 1629721.674 1125116.686 1.015155583 1.596812229 2.025355155 1.000517393 1.334292475 1.436830069 0.96115951 1.00503282 1.448491249 1 20.1016432 -5.29921821 24.99967657 1.179011894 1.550878891 0.265879889 0.286194467 746.7651924 494161.1217 0.081805935 0.121340665 5.02E-06 5.29921821 0.371866998 GYYS(ph)PYSVS(ph)GSGSTAGSR ddPTM_HeLa_A486_30min_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYS(0.994)PY(0.004)S(0.002)VS(0.994)GS(0.006)GSTAGSR;GYYS(0.998)PY(0.001)S(0.001)VS(1)GSGSTAGSR;GYYS(0.994)PY(0.006)S(0.082)VS(0.911)GS(0.007)GSTAGSR;GYYS(0.939)PY(0.057)S(0.1)VS(0.901)GS(0.002)GSTAGSR ;;; 261.06 1.48E-57 1527350000 1541790 1679550 1489850 454639 1959010 1375160 1513880 1640920 1505920 1662380 TRUE FALSE FALSE 1433718.483 1546456.341 2066759.82 1058422.568 1713292.699 1205506.741 1135091.212 1267318.337 1636454.358 1246109.228 1.150556027 1.241027919 1.658570351 0.849381856 1.37491374 0.967416591 0.910908279 1.017020265 1.313251135 1 20.2489991 -5.275249791 24.99886974 1.065372282 1.339149115 0.307844643 0.19778846 980.4847467 1774818.763 0.055372593 0.08260249 5.31E-06 5.275249791 0.273776833 GYYS(ph)PYSVSGS(ph)GSTAGSR ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GY(0.001)Y(0.04)S(0.958)PY(0.001)S(0.002)VS(0.007)GS(0.362)GS(0.267)T(0.224)AGS(0.137)R 79.332 0.006959 104120000 87902 147160 132580 82823 138060 127570 136880 140770 123780 128880 TRUE FALSE FALSE 107455.4966 164369.0819 181626.8591 87347.41077 124314.2616 134249.3679 107634.4698 106245.9368 148621.5106 96752.58786 1.110621421 1.698859798 1.877229986 0.902791467 1.284867562 1.387553252 1.112471223 1.098119845 1.536098557 1 16.56201263 -5.261633803 24.99999995 1.202029906 1.575899329 0.317879902 0.249892725 20.98434801 2698437.912 0.068600853 0.10949959 5.47E-06 5.261633803 0.373869423 GYYS(ph)PYSVSGSGS(ph)TAGS(ph)R ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 GY(0.001)Y(0.006)S(0.993)PYSVSGS(0.1)GS(0.841)T(0.239)AGS(0.819)R 132.67 5.48E-06 469130000 614620 767800 755770 548360 739150 595450 690510 662400 518560 592810 TRUE FALSE FALSE 751340.0986 857587.531 1035360.773 578315.5183 665557.6307 626626.8413 542976.8976 499945.3614 622630.2355 445033.3769 1.688278088 1.927018457 2.326478927 1.299487967 1.495522955 1.408044596 1.220081292 1.123388463 1.399064133 1 18.76355401 -5.282287328 24.17465511 1.295158474 1.975234446 0.724211425 0.198495808 270.121093 313223.6936 0.056777917 0.084331025 5.22E-06 5.282287328 0.680075972 GYYS(ph)PYSVSGSGS(ph)TAGS(ph)R ddPTM_HeLa_A486_30min_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 GYYS(1)PYSVSGSGS(0.999)T(0.001)AGS(1)R;GY(0.003)Y(0.117)S(0.879)PY(0.044)S(0.044)VS(0.098)GS(0.167)GS(0.642)T(0.097)AGS(0.908)R ; 312.26 1.43E-88 300760000 614250 742710 651290 227870 671990 568750 651120 643090 572110 590920 TRUE FALSE FALSE 571194.247 683854.9547 903486.9302 530492.8759 587702.7481 498583.4076 488202.8892 496672.4456 621700.9554 442949.7858 1.289523701 1.543865641 2.039705084 1.197636601 1.326793165 1.125598033 1.102163055 1.12128386 1.403547254 1 18.75678363 -5.459040749 24.92340046 1.186892218 1.616708394 0.501208935 0.201980924 172.8418208 67479.82048 0.05712414 0.084728719 3.48E-06 5.459040749 0.429816176 GYYS(ph)PYSVSGSGS(ph)TAGSR ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYY(0.003)S(0.99)PY(0.006)S(0.001)VS(0.007)GS(0.057)GS(0.604)T(0.191)AGS(0.142)R 172.99 3.74E-12 1232400000 527040 783370 808390 484480 750230 692930 684730 759790 607280 658990 TRUE FALSE FALSE 644278.2297 874978.3071 1107447.101 510945.9156 675534.467 729210.7433 538431.8418 573450.3112 729155.5257 494715.9208 1.302319579 1.768647966 2.238551569 1.032806696 1.365499752 1.473998941 1.088365705 1.159150711 1.473887326 1 18.9162408 -5.280045062 24.9991745 1.244505934 1.7697206 0.469782848 0.263525132 712.928786 957911.6452 0.074600113 0.110872291 5.25E-06 5.280045062 0.525214666 GYYS(ph)PYSVSGSGS(ph)TAGSR ddPTM_HeLa_A486_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GY(0.001)Y(0.02)S(0.915)PY(0.071)S(0.119)VS(0.058)GS(0.112)GS(0.406)T(0.063)AGS(0.234)R 71.742 0.0012454 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GYYS(ph)PYSVSGSGSTAGS(ph)R ddPTM_HeLa_A485_30min_R1 3 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYS(0.999)PYS(0.001)VSGSGST(0.002)AGS(0.998)R;GYYS(0.998)PYS(0.002)VSGSGST(0.001)AGS(0.999)R;GYYS(1)PYSVSGSGST(0.008)AGS(0.992)R ;; 420.91 8.27E-182 2478900000 1243210 1971230 1849100 1174030 1658920 1679090 1656800 1718020 1404480 1614240 TRUE FALSE FALSE 1519757.775 2201748.201 2533159.037 1238164.286 1493752.1 1767004.556 1302811.145 1296672.901 1686346.253 1211839.676 1.254091449 1.816864264 2.090341724 1.021722849 1.232631783 1.458117432 1.075068898 1.07000367 1.391558873 1 20.20876741 -5.274308562 24.99892231 1.190963838 1.730075675 0.519014905 0.238831187 594.8183602 1155458.301 0.06765564 0.101080288 5.32E-06 5.274308562 0.539111838 GYYS(ph)PYSVSGSGSTAGS(ph)R ddPTM_HeLa_A486_30min_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYS(0.965)PY(0.032)S(0.003)VSGS(0.001)GS(0.032)T(0.105)AGS(0.862)R;GYYS(1)PYSVSGSGS(0.003)T(0.003)AGS(0.994)R;GYYS(1)PYSVSGSGSTAGS(1)R;GYYS(0.999)PY(0.001)SVSGS(0.018)GS(0.24)T(0.317)AGS(0.425)R ;;; 413 5.62E-163 3532140000 2986070 3122370 2723440 918170 3440740 2415260 2827240 2910310 2700880 2822360 TRUE FALSE FALSE 2776761.913 2874942.03 3778028.904 2137546.162 3009170.306 2117289.778 2119834.649 2247695.945 2934994.453 2115622.686 1.312503374 1.35891057 1.785776325 1.010362659 1.422356796 1.000787991 1.001990886 1.062427606 1.387295794 1 21.01265092 -5.283509151 24.99953494 1.130967847 1.473048204 0.430883578 0.188994805 757.1366948 857644.8454 0.053140051 0.07888686 5.21E-06 5.283509151 0.342080358 GYYS(ph)PYSVSGSGSTAGSR ddPTM_HeLa_A485_30min_R1 6 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYS(0.542)PYS(0.458)VSGSGSTAGSR;GYYS(0.829)PYS(0.171)VSGSGSTAGSR;GYY(0.001)S(0.866)PY(0.002)S(0.109)VS(0.022)GSGSTAGSR;GYYS(0.878)PYS(0.122)VSGSGSTAGSR;GYYS(0.921)PYS(0.079)VSGSGSTAGSR;GYYS(0.938)PYS(0.061)VSGSGSTAGSR ;;;;; 281.61 2.57E-69 28010300000 2566709 4222941 4390180 2688878 4202630 3472468 4084605 4327230 3492350 3934223 TRUE FALSE FALSE 3137664.562 4716777.215 6014290.273 2835764.597 3784201.401 3654281.055 3211895.774 3265970.058 4193232.611 2953493.61 1.062356983 1.597016225 2.03633089 0.960139066 1.281262769 1.237274068 1.087490341 1.105798925 1.419753406 1 21.49399106 -5.288442474 24.99964533 1.166124248 1.568413087 0.354782366 0.252656835 798.2975465 739067.4384 0.071249675 0.105711989 5.15E-06 5.288442474 0.402288839 GYYS(ph)PYSVSGSGSTAGSR ddPTM_HeLa_A486_30min_R1 5 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYS(0.999)PYS(0.001)VSGSGSTAGSR;GYYS(0.863)PYS(0.134)VS(0.003)GSGSTAGSR;GYYS(0.91)PYS(0.09)VSGSGSTAGSR;GYYS(0.388)PYS(0.388)VS(0.224)GSGSTAGSR;GYYS(0.987)PYS(0.013)VSGSGSTAGSR ;;;; 258.8 8.73E-58 30851100000 2727750 2903873 2569338 737801 3228950 2235715 2659170 2779530 2280587 2513959 TRUE FALSE FALSE 2536548.811 2673759.528 3564254.483 1717638.014 2823944.982 1959895.214 1993817.54 2146691.696 2478270.117 1884447.303 1.346043907 1.418856087 1.891405759 0.911481054 1.498553437 1.040037156 1.058038363 1.139162497 1.315117761 1 20.84571002 -5.271879775 24.99951357 1.150956769 1.538777351 0.458130735 0.20612112 638.4377644 1528737.585 0.056732868 0.085170183 5.35E-06 5.271879775 0.387820583 GYYSPYS(ph)VSGSGSTAGSR ddPTM_HeLa_A485_30min_R1 3 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYS(0.718)VS(0.186)GS(0.096)GSTAGSR;GYYS(0.311)PYS(0.682)VS(0.007)GSGSTAGSR;GYYSPYS(0.999)VSGSGSTAGSR ;; 443.07 3.10E-203 4609700000 721090 1122640 1198670 692370 1213490 1068350 1038060 1260810 995220 1068540 TRUE FALSE FALSE 881493.9828 1253922.982 1642107.914 730192.4199 1092670.675 1124287.154 816270.0008 951594.3706 1194951.525 802172.643 1.098883128 1.563158496 2.047075437 0.910268415 1.362139041 1.401552601 1.01757397 1.186271283 1.489643826 1 19.61355324 -5.280286704 24.99707411 1.211245204 1.569051084 0.278078504 0.275578589 1089.687237 1445242.199 0.077865076 0.115707563 5.24E-06 5.280286704 0.35780588 GYYSPYS(ph)VSGSGSTAGSR ddPTM_HeLa_A486_30min_R1 3 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYS(0.009)PYS(0.982)VS(0.009)GSGSTAGSR;GYYS(0.013)PYS(0.987)VSGSGSTAGSR;GYYS(0.124)PYS(0.876)VSGSGSTAGSR ;; 461.47 5.04E-226 8013900000 1942070 2012640 1867720 596665 2464210 1607270 1916390 1977550 1612750 1822870 TRUE FALSE FALSE 1805940.922 1853151.076 2590951.203 1389066.274 2155125.804 1408981.369 1436888.952 1527305.035 1752544.469 1366411.487 1.321666964 1.356217431 1.896172001 1.016579769 1.577215813 1.031154511 1.051578508 1.117748972 1.282589092 1 20.38196058 -6.269532494 24.91324738 1.101158785 1.431806953 0.37256847 0.218591165 660.3597111 2032796.839 0.074728237 0.067029334 5.38E-07 6.269532494 0.330648169 GYYSPYSVS(ph)GSGS(ph)TAGSR ddPTM_HeLa_A485_30min_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYS(0.11)VS(0.89)GS(0.008)GS(0.987)T(0.004)AGSR;GYYSPYS(0.024)VS(0.976)GS(0.326)GS(0.644)T(0.029)AGS(0.001)R;GYYSPYS(0.005)VS(0.995)GS(0.026)GS(0.809)T(0.15)AGS(0.016)R;GYYSPYS(0.008)VS(0.992)GS(0.008)GS(0.984)T(0.008)AGSR ;;; 189.84 9.41E-18 1878760000 1450410 2093990 2074130 1372220 2238650 1845020 2149830 2245490 1673140 1759420 TRUE FALSE FALSE 1773048.701 2338863.915 2841436.999 1447180.904 2015762.146 1941622.394 1690501.258 1694780.057 2008923.851 1320828.974 1.342375687 1.77075455 2.151252778 1.095661083 1.526134106 1.470002879 1.279878994 1.283118474 1.520956832 1 20.33301224 -7.321410062 0.167293346 0.813772942 1.917387705 0.28698351 0.267282789 4.946831588 0.841466521 2.197120453 2.384969797 4.77E-08 7.321410062 1.103614763 GYYSPYSVS(ph)GSGS(ph)TAGSR ddPTM_HeLa_A486_30min_R1 5 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYS(0.002)VS(0.998)GS(0.001)GS(0.757)T(0.047)AGS(0.195)R;GYYSPYS(0.005)VS(0.995)GSGS(0.991)T(0.009)AGSR;GYYSPYS(0.041)VS(0.959)GS(0.001)GS(0.94)T(0.058)AGS(0.001)R;GYYSPYS(0.046)VS(0.954)GS(0.212)GS(0.536)T(0.014)AGS(0.238)R;GYYSPYS(0.012)VS(0.988)GS(0.067)GS(0.763)T(0.169)AGS(0.001)R ;;;; 298 2.04E-78 1556390000 1368610 1559380 1326640 467496 1798690 1293080 1543790 1480830 1259180 1444060 TRUE FALSE FALSE 1272677.507 1435809.05 1840350.537 1088354.314 1573081.528 1133552.937 1157517.413 1143677.335 1368326.736 1082457.977 1.175729251 1.326433987 1.700158876 1.005447174 1.453249513 1.047202719 1.069341663 1.056555875 1.264092247 1 20.04587959 -6.272756195 24.84268026 1.08984218 1.334172025 0.316642379 0.179758432 862.2680373 1892845.594 0.062001954 0.055172948 5.34E-07 6.272756195 0.244329845 GYYSPYSVS(ph)GSGSTAGS(ph)R ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPY(0.005)S(0.042)VS(0.95)GS(0.005)GS(0.038)T(0.355)AGS(0.605)R 93.92 0.0012501 98443000 222880 338970 331670 220260 336090 313170 321580 356630 296920 275370 TRUE FALSE FALSE 272458.8871 378609.5929 454368.5349 232292.2461 302627.6995 329567.0969 252871.8059 269165.9333 356509.1205 206725.3268 1.31797536 1.83146206 2.197933567 1.123675796 1.463912062 1.594226997 1.223226055 1.302046234 1.724554635 1 17.65735562 -5.275897834 24.99772658 1.369930705 1.787357544 0.330096326 0.282729183 925.3534393 1599873.84 0.078895058 0.117602058 5.30E-06 5.275897834 0.41742684 GYYSPYSVS(ph)GSGSTAGS(ph)R ddPTM_HeLa_A486_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYS(0.011)VS(0.989)GSGS(0.001)T(0.002)AGS(0.997)R 239.58 5.64E-45 157350000 342390 380590 318010 93789 407390 284310 366740 342730 300240 361670 TRUE FALSE FALSE 318390.2291 350430.6623 441151.9886 218345.5318 356291.3474 249234.7229 274977.773 264697.8607 326265.0449 271105.4779 1.174414591 1.292598973 1.627233769 0.805389598 1.314216703 0.919327506 1.014283352 0.976364855 1.203461647 1 18.04849474 -5.265444407 24.99967584 1.038471815 1.357534092 0.444250025 0.169761404 314.7234431 1964528.461 0.045805406 0.070892129 5.43E-06 5.265444407 0.319062278 GYYSPYSVS(ph)GSGSTAGSR ddPTM_HeLa_A485_30min_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYS(0.002)VS(0.996)GS(0.001)GSTAGSR;GYYSPYS(0.003)VS(0.996)GSGSTAGSR ; 317.03 2.42E-89 2732900000 540420 935550 1007710 566610 992040 909660 912410 1041880 837440 856610 TRUE FALSE FALSE 660634.5646 1044954.434 1380503.863 597562.4696 893269.0143 957288.391 717466.1498 786357.2964 1005506.527 643072.8917 1.027308993 1.624939331 2.146729991 0.929229761 1.389063395 1.488615682 1.115684021 1.222812074 1.563596506 1 19.29462275 -5.286625452 24.99931826 1.264299188 1.602187743 0.209798362 0.314471921 1227.946033 1218837.952 0.088783993 0.131748241 5.17E-06 5.286625452 0.337888555 GYYSPYSVS(ph)GSGSTAGSR ddPTM_HeLa_A486_30min_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYS(0.005)VS(0.96)GS(0.035)GSTAGSR;GYYSPYS(0.001)VS(0.999)GSGSTAGSR;GYYSPYSVS(0.997)GS(0.002)GS(0.001)TAGSR;GYYSPYS(0.035)VS(0.96)GS(0.005)GSTAGSR ;;; 324.19 5.86E-90 4397830000 1389030 1403150 1289590 376233 1704380 1259540 1365970 1359740 1308700 1578660 TRUE FALSE FALSE 1291666.17 1291959.284 1788953.784 875889.4378 1490600.768 1104150.761 1024189.858 1050156.885 1422139.17 1183353.261 1.091530495 1.091778192 1.511766472 0.740175793 1.259641408 0.933069437 0.865497981 0.887441578 1.201787511 1 20.17444939 -5.269067179 24.99339434 0.983687161 1.217700371 0.281601396 0.180921706 768.5911499 2518379.43 0.049763514 0.075421104 5.38E-06 5.269067179 0.23401321 GYYSPYSVSGSGS(ph)T(ph)AGSR ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYS(0.001)VS(0.005)GS(0.112)GS(0.869)T(0.688)AGS(0.325)R 77.468 0.010442 222140000 283930 362010 343430 241050 323600 301080 392220 375460 250900 309700 TRUE FALSE FALSE 347089.249 404343.9204 470479.0483 254217.9511 291381.2478 316844.0832 308418.9929 283377.8463 301253.3286 232497.4896 1.492873104 1.739132414 2.023587649 1.093422349 1.253266211 1.362784965 1.326547626 1.218842607 1.295727232 1 17.82685561 -5.270106246 24.99007815 1.242217259 1.750591198 0.704017708 0.157183391 341.889515 985805.0717 0.044161571 0.066656259 5.37E-06 5.270106246 0.508373939 GYYSPYSVSGSGS(ph)TAGS(ph)R ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYSVSGSGS(0.999)T(0.001)AGS(1)R 274.58 1.02E-68 142200000 213020 285600 300850 200690 254120 215680 318160 277520 216140 246250 TRUE FALSE FALSE 260405.5641 318998.4356 412146.9344 211653.1865 228818.9205 226972.6713 250182.5169 209457.7849 259517.3154 184864.4069 1.408630079 1.725580608 2.229455314 1.144910424 1.237766233 1.227779187 1.353329833 1.133034684 1.403825213 1 17.49610795 -5.288936787 24.99797761 1.227243566 1.781657945 0.601218863 0.213845888 480.5791654 436894.9218 0.059701751 0.088574904 5.14E-06 5.288936787 0.554414378 GYYSPYSVSGSGS(ph)TAGS(ph)R ddPTM_HeLa_A486_30min_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYSVS(0.003)GS(0.039)GS(0.95)T(0.011)AGS(0.997)R;GYYSPYSVSGS(0.019)GS(0.886)T(0.256)AGS(0.839)R ; 123.55 1.32E-06 131900000 388720 437200 395060 191289 434730 403530 494960 456070 356750 493210 TRUE FALSE FALSE 361472.7354 402554.6797 548037.8121 445330.4592 380202.1097 353746.5714 371115.7728 352232.8169 387673.3772 369707.0057 0.977727578 1.088847854 1.482357119 1.20454969 1.028387625 0.956829505 1.003810496 0.952735035 1.048596243 1 18.49602286 -5.811977973 4.737960451 0.99125037 1.202852335 0.368562227 0.121775328 0.222615165 10.56954427 0.040744437 0.047723574 1.54E-06 5.811977973 0.211601966 GYYSPYSVSGSGS(ph)TAGSR ddPTM_HeLa_A485_30min_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYSVSGSGS(0.917)T(0.078)AGS(0.005)R;GYYSPYSVSGSGS(0.799)T(0.057)AGS(0.144)R ; 340.61 5.13E-102 1454090000 533680 816470 808250 501470 780710 706390 881090 884060 613110 723460 TRUE FALSE FALSE 652395.2748 911949.0642 1107255.309 528864.0363 702979.7712 743375.4881 692837.9237 667242.8988 736155.5532 543114.7363 1.201210778 1.67910941 2.038713434 0.973761161 1.29434855 1.368726419 1.27567506 1.228548692 1.355432847 1 19.05089748 -5.273227763 24.96447182 1.235699047 1.643621053 0.423267337 0.226797569 706.0971988 1495313.475 0.063943889 0.095706738 5.33E-06 5.273227763 0.407922005 GYYSPYSVSGSGS(ph)TAGSR ddPTM_HeLa_A486_30min_R1 3 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYSVSGSGS(0.783)T(0.215)AGS(0.001)R;GYYSPYSVSGSGS(0.338)T(0.338)AGS(0.325)R;GYYSPYSVSGS(0.003)GS(0.907)T(0.089)AGS(0.001)R ;; 388.83 2.18E-145 2501570000 963450 989660 856350 314991 1080030 828380 948700 972140 817320 959890 TRUE FALSE FALSE 895917.1303 911235.7373 1187951.654 733314.9668 944562.5665 726182.898 711325.2257 750804.9437 888165.9557 719527.2962 1.245146828 1.266436648 1.6510168 1.019162123 1.31275432 1.009249964 0.988600751 1.043469716 1.234374235 1 19.45668989 -5.292738561 24.99703643 1.090704484 1.375423883 0.477304893 0.144008937 582.3572254 465097.3144 0.040735997 0.060428237 5.10E-06 5.292738561 0.284719398 GYYSPYSVSGSGST(ph)AGSR ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYSVSGSGS(0.064)T(0.924)AGS(0.012)R 400.27 2.00E-146 742050000 322630 495420 504550 302210 461880 450880 488570 499620 378610 419170 TRUE FALSE FALSE 394397.9304 553355.0594 691204.0411 318718.9671 415893.6054 474487.3796 384183.0283 377087.4116 454593.5542 314678.6333 1.25333559 1.758476747 2.196539479 1.012839556 1.321645519 1.507847466 1.220874212 1.19832544 1.444627967 1 18.2635197 -5.277630698 24.99378907 1.265298887 1.738353279 0.426455485 0.260830178 774.7487636 1195942.125 0.07377155 0.10980318 5.28E-06 5.277630698 0.473054392 GYYSPYSVSGSGSTAGS(ph)R ddPTM_HeLa_A486_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 GYYSPYSVSGSGS(0.166)T(0.024)AGS(0.81)R 347.12 3.72E-115 815780000 265110 258820 253260 87244 317090 243630 305820 263600 250450 267260 TRUE FALSE FALSE 246527.158 238310.1606 351329.0545 203108.4411 277317.6155 213573.4076 229300.6014 203584.0343 272159.2077 200336.3564 1.230566246 1.189550239 1.753695938 1.013837152 1.384260053 1.066074134 1.144578076 1.016211126 1.358511318 1 17.61206474 -5.935040787 1.442294289 1.123547372 1.342694827 0.171450408 0.202244744 0.720355925 3.099289835 0.079177215 0.093762411 1.16E-06 5.935040787 0.219147455 GYYSPYSVSGSGSTAGS(ph)RTGS(ph)R ddPTM_HeLa_A485_30min_R1 1 GYYSPYSVSGSGSTAGSRTGSR 22 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 GYYSPYSVSGS(0.004)GS(0.05)T(0.195)AGS(0.701)RT(0.365)GS(0.685)R 65.248 0.00031571 0 47606 91133 113190 55204 274420 175980 259510 463550 125930 116350 TRUE FALSE FALSE 58195.79046 101790.2116 155063.6912 58219.65474 247097.7813 185194.0407 204063.5685 349863.6357 151202.9959 87346.08626 0.666266721 1.1653666 1.775279212 0.666539936 2.828950807 2.120232842 2.336264591 4.005487259 1.731079232 1 16.41445544 -5.764189793 24.99996292 2.476401524 1.125785884 0.376203509 0.786742063 71.14126694 646641.9201 0.232680187 0.275799098 1.72E-06 5.764189793 -1.35061564 HAAFVT(ph)PDQK ddPTM_HeLa_A485_30min_R1 2 HAAFVTPDQK 10 0 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 HAAFVT(1)PDQK;HAAFVT(1)PDQK ; 129.71 0.00010742 101520000 319890 289600 222910 427310 412890 369180 506130 437410 289770 561130 TRUE FALSE FALSE 391048.4269 323466.2008 305373.6851 450652.8633 371781.2219 388509.6939 397991.1908 330134.5117 347924.1811 421250.6178 0.928303509 0.767871161 0.724921631 1.069797513 0.882565404 0.922276853 0.944784824 0.783700955 0.825931563 1 18.68431928 -5.225388257 24.99966627 0.90918759 0.803116035 0.236856396 0.090496765 942.3286545 653457.0363 0.025021292 0.043336315 5.95E-06 5.225388257 -0.106071556 HAAFVT(ph)PDQK ddPTM_HeLa_A486_30min_R1 1 HAAFVTPDQK 10 0 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 HAAFVT(1)PDQK 118.61 0.00042674 105760000 336630 312090 170320 159780 294290 374740 448110 420910 247860 438290 TRUE FALSE FALSE 313033.9754 287358.8518 236272.4653 371975.9148 257377.4041 328508.3889 335988.1384 325077.9814 269344.7044 328539.3312 0.952805176 0.874655862 0.719160365 1.132211213 0.783399062 0.999905818 1.022672497 0.989464428 0.819824839 1 18.32570657 -5.247987506 24.99599154 0.959911483 0.851452033 0.191499181 0.108073606 1404.872236 2610499.385 0.028531009 0.049060816 5.65E-06 5.247987506 -0.10845945 HAALCAMEVLPLALPS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 HAALCAMEVLPLALPSPPR 19 0 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 HAALCAMEVLPLALPS(1)PPR;HAALCAMEVLPLALPS(1)PPR ; 113.73 3.07E-05 328870000 122083 139808 141718 147596 187171 132975 182556 153965 141453 199132 TRUE FALSE FALSE 149239.9422 156157.3294 194145.3856 155658.7957 168535.598 139937.3654 143551.4193 116204.8423 169841.3196 149492.0572 0.998313523 1.04458613 1.298700341 1.041251279 1.127388312 0.936085623 0.96026118 0.777331214 1.1361227 1 17.18970931 -6.263456668 24.84057666 0.947937153 1.106403142 0.277883462 0.111665184 204.3556155 2516389.223 0.037792105 0.03497172 5.45E-07 6.263456668 0.158465989 HAALCAMEVLPLALPS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 HAALCAMEVLPLALPSPPR 19 0 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 HAALCAMEVLPLALPS(1)PPR;HAALCAMEVLPLALPS(1)PPR ; 115.55 2.56E-05 394260000 293060 301230 221428 111485 275740 299210 316110 320120 259040 354050 TRUE FALSE FALSE 272518.0074 277359.4377 307170.8516 259542.7141 241154.118 262296.5123 237015.9345 247235.6642 281493.7958 265393.5755 1.026844779 1.045087234 1.157416305 0.97795402 0.908665997 0.988330301 0.893073369 0.931581195 1.060665448 1 18.01777392 -5.44499091 8.492634358 0.956673687 1.072915479 0.454278801 0.055420199 0.304964269 30.87380362 0.01551862 0.023012834 3.59E-06 5.44499091 0.116241792 HAAS(ph)YSSDSENQGSYSGVIPPPPGR ddPTM_HeLa_A485_30min_R1 1 HAASYSSDSENQGSYSGVIPPPPGR 25 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 HAAS(0.222)Y(0.191)S(0.191)S(0.191)DS(0.191)ENQGS(0.006)Y(0.005)S(0.002)GVIPPPPGR 58.964 0.018579 201820000 63768 96666 88324 66899 124310 85990 112740 112570 97337 116060 TRUE FALSE FALSE 77952.9716 107970.2478 120998.7231 70553.52297 111933.2599 90492.30343 88652.178 84962.031 116871.6431 87128.37793 0.894690954 1.239208744 1.388740683 0.809765138 1.28469349 1.038608839 1.017489136 0.97513615 1.341372878 1 16.41085506 HAASYS(ph)SDSENQGSYSGVIPPPPGR ddPTM_HeLa_A485_30min_R1 1 HAASYSSDSENQGSYSGVIPPPPGR 25 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 HAAS(0.087)Y(0.078)S(0.278)S(0.278)DS(0.278)ENQGSYSGVIPPPPGR 71.428 0.0071368 301530000 109930 146900 127120 117560 174680 105620 158610 161220 109270 165680 TRUE FALSE FALSE 134383.5492 164078.6771 174146.9779 123982.0051 157288.2459 111150.0999 124721.6778 121680.5422 131199.4867 124379.0251 1.080435782 1.319182852 1.400131395 0.996807983 1.264588187 0.893640224 1.002754907 0.978304357 1.054836108 1 16.92438369 -5.895954161 1.41147308 0.990229679 1.250130752 0.427322543 0.120873032 0.373165988 1.545819238 0.047473697 0.058382992 1.27E-06 5.895954161 0.259901073 HADDDRPPRR ddPTM_HeLa_A485_30min_R1 2 HADDDRPPRR 10 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 123.63 0.00010234 107754000 37292 47141 28421 40293 26219 48556 47842 64659 43124 46030 FALSE FALSE TRUE 45587.47674 52653.72988 38935.1106 42494.10456 23608.5443 51098.31708 37620.16587 48801.27887 51778.59124 34555.56812 1.319251259 1.523740825 1.126739125 1.229732482 0.683205214 1.478728895 1.088686076 1.412255145 1.498415279 1 15.07663058 -4.766760323 24.9937219 1.194496223 1.421496054 0.133280231 0.236168946 244.9624404 1150666.324 0.061925149 0.135236816 1.71E-05 4.766760323 0.226999831 HADDDRPPRR ddPTM_HeLa_A486_30min_R1 2 HADDDRPPRR 10 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 98.943 0.0015247 40878000 18133.8 17606.2 27807 12104.4 12737.1 41909 27723 23182 36939 30287 FALSE FALSE TRUE 16862.71426 16211.02059 38574.6151 28179.65492 11139.49415 36738.69368 20786.41218 17903.96466 40140.90226 22702.93806 0.742754714 0.714049457 1.699102336 1.241233837 0.490663108 1.618235207 0.915582473 0.788618839 1.768092841 1 14.47059139 HADGEKEDQFNGS(ph)PPRPQPR ddPTM_HeLa_A485_30min_R1 6 HADGEKEDQFNGSPPRPQPR 20 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR ;;;;; 209.45 4.71E-27 12114150000 1373330 1448150 1096540 2041290 1927340 1596870 2466800 2658760 1408420 2775190 TRUE FALSE FALSE 1678822.521 1617498.545 1502195.777 2152800.504 1735447.262 1680479.644 1939748.028 2006694.941 1691076.975 2083386.207 0.805814359 0.776379598 0.721035674 1.033318017 0.832993545 0.806609758 0.931055424 0.963189127 0.811696348 1 20.99049887 -1.000000001 0.11223831 1.032043677 0.238210183 0.292719372 0.084022042 137.7497152 1.0779562 0.738605448 16.96903552 0.1 1.000000001 -0.793833493 HADGEKEDQFNGS(ph)PPRPQPR ddPTM_HeLa_A486_30min_R1 3 HADGEKEDQFNGSPPRPQPR 20 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR;HADGEKEDQFNGS(1)PPRPQPR ;; 199.83 1.41E-26 6786600000 1676060 1611940 885530 782920 1522570 1630320 2143000 1942720 1249180 2202560 TRUE FALSE FALSE 1558576.849 1484204.004 1228430.931 1822677.327 1331595.073 1429187.694 1606798.734 1500405.065 1357459.928 1651024.64 0.944005808 0.89895933 0.74404155 1.103967368 0.806526469 0.865636805 0.973213055 0.908772061 0.82219241 1 20.65493022 -10.2222601 4.148796725 1.000056627 0.897148859 0.097754952 0.09442423 123476044.3 7.788487973 71982.4231 0.021827371 5.99E-11 10.2222601 -0.102907768 HADNS(ph)SDTEMEDMIAEETLEEMDSELLK ddPTM_HeLa_A485_30min_R1 3 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HADNS(0.467)S(0.467)DT(0.066)EMEDMIAEETLEEMDSELLK;HADNS(0.32)S(0.32)DT(0.32)EMEDMIAEET(0.039)LEEMDSELLK;HADNS(0.316)S(0.316)DT(0.316)EMEDMIAEET(0.052)LEEMDSELLK ;; 186.23 1.54E-20 175513000 21808.2 24647.5 18953.1 27974.6 28887.5 20856.47 41695.7 45854.4 23217.4 45164 TRUE FALSE FALSE 26659.35885 27529.81072 25964.64039 29502.78156 26011.35907 21948.48252 32787.07307 34608.5365 27876.91922 33905.44598 0.78628545 0.811958372 0.765795572 0.870148754 0.767173483 0.647343867 0.967014948 1.020736802 0.822195916 1 15.0492294 -6.790804507 24.99707825 0.954215128 0.78005419 0.595917916 0.071602596 152.3928043 129723.0469 0.029897497 0.020160353 1.62E-07 6.790804507 -0.174160938 HADNS(ph)SDTEMEDMIAEETLEEMDSELLK ddPTM_HeLa_A486_30min_R1 3 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HADNS(0.419)S(0.419)DT(0.161)EMEDMIAEETLEEMDSELLK;HADNS(0.27)S(0.27)DT(0.27)EMEDMIAEET(0.191)LEEMDSELLK;HADNS(0.333)S(0.333)DT(0.333)EMEDMIAEETLEEMDSELLK ;; 191.02 8.52E-21 85631000 36503.5 32600.9 17880.8 19164.2 36732.5 36543.6 45577.7 46207.4 28424.3 48281.2 TRUE FALSE FALSE 33944.79315 30017.48595 24804.72462 44615.22611 32125.16733 32035.22218 34173.67739 35686.98372 30888.14121 36191.27326 0.937927575 0.829412266 0.685378612 1.232761992 0.887649547 0.885164276 0.944251868 0.986065991 0.853469315 1 15.14335424 -5.190641109 24.99999886 0.961312058 0.818757195 0.268949307 0.114475301 228.967798 80851.15433 0.030699031 0.053172278 6.45E-06 5.190641109 -0.142554863 HADNSSDT(ph)EMEDMIAEETLEEMDSELLK ddPTM_HeLa_A485_30min_R1 5 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HADNS(0.308)S(0.308)DT(0.38)EMEDMIAEET(0.005)LEEMDSELLK;HADNS(0.292)S(0.292)DT(0.416)EMEDMIAEETLEEMDSELLK;HADNS(0.259)S(0.259)DT(0.483)EMEDMIAEETLEEMDSELLK;HADNS(0.299)S(0.299)DT(0.373)EMEDMIAEET(0.028)LEEMDSELLK;HADNS(0.221)S(0.221)DT(0.266)EMEDMIAEET(0.291)LEEMDSELLK ;;;; 138.15 1.87E-06 211268000 39961.7 40844.4 35421.2 59182.8 63443.1 45371.5 82779.3 83396.6 44809.2 88265.3 TRUE FALSE FALSE 48851.0423 45620.79728 48524.97588 62415.80651 57126.4822 47747.08158 65092.82631 62943.45309 53801.99543 66262.38511 0.737236401 0.688487099 0.732315563 0.941949288 0.862125354 0.720575957 0.982349582 0.949912277 0.811953801 1 16.01590251 -1.901584858 0.180438335 0.99376871 1.18E-18 0.468222492 0.082797741 37.73456226 0.565133492 0.202307024 9.644270347 0.012543396 1.901584858 -0.99376871 HADNSSDT(ph)EMEDMIAEETLEEMDSELLK ddPTM_HeLa_A486_30min_R1 3 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HADNS(0.304)S(0.304)DT(0.391)EMEDMIAEETLEEMDSELLK;HADNS(0.307)S(0.307)DT(0.381)EMEDMIAEET(0.004)LEEMDSELLK;HADNS(0.311)S(0.311)DT(0.371)EMEDMIAEET(0.007)LEEMDSELLK ;; 148.53 4.51E-09 101106000 33159.1 31882.7 19469.1 14864.1 34127.8 37269.6 44972.3 48456.2 29356.5 44487.8 TRUE FALSE FALSE 30834.81832 29356.19874 27008.05692 34604.37599 29847.17309 32671.65568 33719.75487 37423.78105 31901.14506 33347.76531 0.924644216 0.880304826 0.809891058 1.037682006 0.895027682 0.979725489 1.011154857 1.122227553 0.956620174 1 15.02530247 -6.065866036 0.898994407 1.033439749 0.883315924 0.402916568 0.065245066 0.548046289 0.967386722 0.036724365 0.041803681 8.59E-07 6.065866036 -0.150123826 HADNSSDTEMEDMIAEET(ph)LEEMDSELLK ddPTM_HeLa_A486_30min_R1 1 HADNSSDTEMEDMIAEETLEEMDSELLK 28 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HADNS(0.237)S(0.237)DT(0.237)EMEDMIAEET(0.29)LEEMDSELLK 93.552 0.0051879 29902000 7211.7 6038.4 4058.1 3792 6595 8741.2 10718 9694.3 7359.9 11679 TRUE FALSE FALSE 6706.197071 5559.895193 5629.505 8827.967637 5767.793604 7662.799618 8036.243037 7487.119515 7997.862058 8754.502382 0.766028356 0.635089803 0.643041118 1.008391711 0.658837402 0.875298136 0.917955434 0.855230736 0.913571293 1 13.09580946 -5.498839038 0.247643756 1.008714563 0.544927204 0.43508049 0.102062758 5.174803987 0.470284538 0.174399482 0.733831371 3.17E-06 5.498839038 -0.463787359 HAEMVHTGLK(ac)LER ddPTM_HeLa_A485_30min_R1 2 HAEMVHTGLKLER 13 1 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 1 ; HAEMVHTGLK(1)LER;HAEMVHTGLK(1)LER 151.3 1.06E-05 23990000 5918 7016.4 7663.9 6157.6 8956.7 6330.5 8316.9 9882.8 6831.4 8669.6 FALSE TRUE FALSE 7234.438683 7836.906945 10499.09553 6493.974096 8064.939499 6661.955191 6539.926372 7459.027804 8202.399319 6508.428272 1.111549268 1.204116665 1.613153759 0.99777916 1.239153166 1.023588939 1.004839586 1.146056696 1.260273445 1 12.66809347 HAEMVHTGLK(ac)LER ddPTM_HeLa_A486_30min_R1 1 HAEMVHTGLKLER 13 1 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 1 HAEMVHTGLK(1)LER 173.44 7.02E-08 12510000 2682 2304.7 2896.1 1129.6 4335.1 2929.2 3570.4 3408 2379.2 3814.9 FALSE TRUE FALSE 2494.00565 2122.067178 4017.54748 2629.765887 3791.351335 2567.825086 2677.048156 2632.072796 2585.430972 2859.624209 0.872144543 0.742079037 1.404921481 0.919619396 1.325821527 0.897958927 0.93615383 0.920426113 0.90411564 1 11.48160986 HAGVQTSRPIS(ph)R ddPTM_HeLa_A485_30min_R1 2 HAGVQTSRPISR 12 1 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 HAGVQT(0.003)S(0.004)RPIS(0.993)R;HAGVQT(0.005)S(0.005)RPIS(0.99)R ; 81.619 0.00254 83179000 59239 87148 75736 42436 107308 78892 93706 113491 74271 68545 TRUE FALSE FALSE 72416.51118 97339.20051 103753.898 44754.17123 96624.03874 83022.66313 73684.94759 85657.1543 89176.50845 51457.99298 1.407293736 1.891624505 2.016283419 0.86972244 1.877726533 1.613406554 1.431943675 1.664603482 1.732996242 1 15.65110757 -9.989308244 4.056456807 0.999952841 1.614179775 0.260686554 0.309032178 152295818.2 328696739.4 106738.1174 0.075465569 1.02E-10 9.989308244 0.614226934 HAHSSSLQQAAS(ph)R ddPTM_HeLa_A485_30min_R1 1 HAHSSSLQQAASR 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 HAHSSSLQQAAS(1)R 53.395 0.033772 25610000 37585 34638 28035 58953 27321 53561 44649 57931 38219 56878 TRUE FALSE FALSE 45945.65358 38688.61279 38406.31313 62173.45311 24600.82531 56365.37114 35109.3764 43723.33142 45889.20273 42699.36136 1.076026716 0.906070057 0.899458725 1.456074544 0.576140357 1.320051854 0.822245937 1.023980922 1.074704662 1 15.38192687 -10.09666545 3.70551468 0.999995781 1.01377305 0.000292127 0.234521301 145486859.8 18921.24936 7682.767129 0.052048694 8.00E-11 10.09666545 0.01377727 HAHSSSLQQAAS(ph)R ddPTM_HeLa_A486_30min_R1 1 HAHSSSLQQAASR 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 HAHSSSLQQAAS(1)R 127.75 1.89E-05 15353000 13762 14993 18795 6668.9 15894 13519 13042 12075 17133 13028 TRUE FALSE FALSE 12797.35487 13804.90008 26072.92735 15525.53623 13900.42631 11851.16323 9778.753656 9325.786095 18618.10223 9765.704002 1.310438537 1.413610332 2.669846162 1.589802049 1.42339214 1.213549297 1.001336274 0.954952771 1.906478246 1 13.25350834 -5.830444594 2.74862052 1.209103784 1.799552226 0.258307926 0.425601106 0.371382919 5.710384528 0.144349071 0.173828282 1.48E-06 5.830444594 0.590448442 HAIPS(ph)AERGPGLLESPSIFNFTADR ddPTM_HeLa_A485_30min_R1 2 HAIPSAERGPGLLESPSIFNFTADR 25 1 Q92615 Q92615 LARP4B La-related protein 4B 1 0 HAIPS(1)AERGPGLLESPSIFNFTADR;HAIPS(1)AERGPGLLESPSIFNFTADR ; 189.7 8.90E-21 205772000 47019 71273 76282 57221 114435 78532 101754 114923 79181 83598 TRUE FALSE FALSE 57478.21434 79607.75736 104501.8862 60346.83834 103041.4496 82643.81409 80013.42665 86737.95406 95071.90041 62758.55711 0.915862585 1.26847654 1.665141631 0.961571475 1.641870915 1.316853317 1.274940507 1.382089679 1.514883464 1 15.93752456 -4.300654828 4.16056618 1.357590949 0.894368646 0.244976191 0.222684466 0.249512775 8.856506836 0.051677896 0.31277014 5.00E-05 4.300654828 -0.463222303 HAPEHHPGHGDRLS(ph)PGER ddPTM_HeLa_A485_30min_R1 2 HAPEHHPGHGDRLSPGER 18 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER ; 97.974 0.00015728 378683000 20235.6 24526.7 20857.3 25320 22872.4 11385.1 15322.5 21391.9 16835.4 30194 TRUE FALSE FALSE 24736.93941 27394.88421 28573.28321 26703.16749 20595.14355 11981.20623 12048.7227 16145.50298 20214.11036 22667.19148 1.091310294 1.20856985 1.260556838 1.178053642 0.908588237 0.52857039 0.531548988 0.71228511 0.891778339 1 14.46831803 -5.916489673 3.399803051 0.70233489 1.192645357 0.688239036 0.1421929 0.130970962 3.020801875 0.047526461 0.054198107 1.21E-06 5.916489673 0.490310467 HAPEHHPGHGDRLS(ph)PGER ddPTM_HeLa_A486_30min_R1 3 HAPEHHPGHGDRLSPGER 18 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER;HAPEHHPGHGDRLS(1)PGER ;; 136.62 2.26E-06 243233000 67541.4 33880.1 48023.7 28083 59632.6 49475.9 31786.2 29655.8 24758.7 51810.1 TRUE FALSE FALSE 62807.09664 31195.31749 66619.76276 65378.64324 52152.92326 43372.06649 23832.95656 22903.82172 26904.80405 38836.51373 1.61721768 0.803247112 1.715389883 1.683432341 1.342883751 1.116785785 0.613673944 0.589749685 0.692770835 1 15.24512608 -6.529200136 2.670130675 0.689411451 1.426770917 0.611494048 0.264708042 0.190061201 2.739992423 0.111893987 0.087630787 2.96E-07 6.529200136 0.737359466 HAPHCLS(ph)EEEGEQDRPR ddPTM_HeLa_A485_30min_R1 2 HAPHCLSEEEGEQDRPR 17 1 E9PH18;A0A0J9YX62;O75190-4;O75190-3;O75190 E9PH18 DNAJB6 DnaJ homolog subfamily B member 6 1 0 HAPHCLS(1)EEEGEQDRPR;HAPHCLS(1)EEEGEQDRPR ; 229.46 7.86E-35 6264500000 646880 851250 867850 643490 1204860 665940 884550 1029360 800630 829230 TRUE FALSE FALSE 790776.2243 950796.2826 1188903.829 678642.2293 1084899.908 700807.5887 695558.6664 776907.846 961309.0972 622518.2218 1.270286068 1.527338878 1.909829765 1.090156409 1.742760083 1.12576237 1.117330613 1.248008201 1.544226439 1 19.24775654 -6.280163948 24.98955333 1.216957596 1.508246608 0.266709256 0.249286291 1202.72466 1605134.638 0.086149767 0.07610117 5.25E-07 6.280163948 0.291289012 HAPHCLS(ph)EEEGEQDRPR ddPTM_HeLa_A486_30min_R1 3 HAPHCLSEEEGEQDRPR 17 1 E9PH18;A0A0J9YX62;O75190-4;O75190-3;O75190 E9PH18 DNAJB6 DnaJ homolog subfamily B member 6 1 0 HAPHCLS(1)EEEGEQDRPR;HAPHCLS(1)EEEGEQDRPR;HAPHCLS(1)EEEGEQDRPR ;; 208.47 1.38E-25 6363680000 585940 829255 807089 323917 941530 687726 841794 863058 540298 709049 TRUE FALSE FALSE 544868.6318 763541.8137 1119615.475 754095.1459 823434.528 602881.3584 631168.2376 666558.5338 587131.4657 531498.5153 1.025155511 1.436583155 2.106526064 1.418809506 1.549269667 1.134304878 1.187525872 1.254111751 1.104671883 1 19.01970614 -6.261128331 24.92042541 1.155217539 1.531719478 0.344177494 0.254367027 33.63153638 2694541.433 0.090360814 0.08503032 5.48E-07 6.261128331 0.376501939 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK ddPTM_HeLa_A485_30min_R1 4 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK 30 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK ;;; 286 4.88E-78 14329000000 1243670 1336970 1176920 1672290 1848040 1558950 2231230 2167610 1359770 2402890 TRUE FALSE FALSE 1520320.101 1493317.011 1612311.684 1763642.968 1664042.649 1640574.211 1754509.483 1636000.249 1632663.366 1803893.745 0.842799142 0.827829807 0.893795263 0.977686725 0.922472653 0.909462775 0.97262352 0.90692717 0.905077348 1 20.78268293 -4.944809825 3.957051916 0.937386925 0.836413635 0.643034985 0.031603016 0.131519734 4.256220568 0.008273743 0.01823689 1.14E-05 4.944809825 -0.10097329 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK ddPTM_HeLa_A486_30min_R1 4 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK 30 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 HAPS(0.99)PEPAVQGT(0.01)GVAGVPEESGDAAAIPAK;HAPS(0.967)PEPAVQGT(0.033)GVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK ;;; 248.62 7.64E-51 13519600000 1192710 1170590 669709 408410 1141770 1207870 1254910 1306780 937760 1449230 TRUE FALSE FALSE 1109107.188 1077828.185 929038.2602 950799.1199 998558.56 1058855.28 940918.2449 1009254.721 1019045.792 1086333.375 1.020963927 0.992170737 0.855205484 0.875236959 0.919200848 0.974705652 0.86614134 0.929046961 0.938059913 1 20.05103548 -10.00813594 16.69717643 0.999999962 0.927173631 0.137733467 0.052026815 0 0 0.053097777 0.012878103 9.81E-11 10.00813594 -0.072826332 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAKK ddPTM_HeLa_A486_30min_R1 3 HAPSPEPAVQGTGVAGVPEESGDAAAIPAKK 31 1 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAKK;HAPS(0.999)PEPAVQGT(0.001)GVAGVPEESGDAAAIPAKK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAKK ;; 152.77 7.29E-10 2856560000 1216450 1149230 553980 555430 1106280 1275050 1530190 1426450 892730 1594990 TRUE FALSE FALSE 1131183.137 1058160.829 768495.8921 1293069.11 967520.0467 1117747.295 1147320.277 1101678.474 970112.5552 1195594.122 0.946126378 0.88505021 0.642773227 1.081528493 0.809237875 0.934888583 0.959623551 0.921448553 0.81140626 1 20.18929628 -5.273224032 24.99927565 0.924149925 0.830689949 0.176006159 0.104599942 1413.422274 2998348.597 0.028807808 0.043110783 5.33E-06 5.273224032 -0.093459975 HAPT(ph)S(ph)T(ph)VSK ddPTM_HeLa_A485_30min_R1 1 HAPTSTVSK 9 0 Q9H2X6-3;Q9H2X6 Q9H2X6-3 HIPK2 Homeodomain-interacting protein kinase 2 3 0 HAPT(1)S(1)T(1)VSK 65.305 0.007582 503610000 317740 275120 196930 453100 302980 308120 477280 414930 262230 575120 TRUE FALSE FALSE 388420.1668 307292.8908 269782.6019 477851.7057 272814.2474 324252.6868 375305.229 313167.7669 314857.1557 431753.1683 0.899634781 0.711732799 0.624853786 1.106770583 0.631875496 0.75101403 0.869258772 0.725339824 0.729252681 1 18.71984724 -9.891139426 5.609720708 1.000000132 0.781471869 0.184984546 0.136405804 2.16E-07 4.29E-08 0.127168187 0.030842797 1.28E-10 9.891139426 -0.218528263 HAPT(ph)S(ph)T(ph)VSK ddPTM_HeLa_A486_30min_R1 2 HAPTSTVSK 9 0 Q9H2X6-3;Q9H2X6 Q9H2X6-3 HIPK2 Homeodomain-interacting protein kinase 2 3 0 HAPT(1)S(1)T(1)VS(0.001)K;HAPT(1)S(1)T(1)VS(0.001)K ; 50.95 0.018152 1131560000 912360 855410 354370 376540 511140 835660 1005040 898700 616590 1460180 TRUE FALSE FALSE 848408.2754 787624.1963 491591.5544 876604.1493 447028.055 732564.7656 753568.3618 694085.6285 670036.5177 1094541.424 0.775126694 0.719592862 0.44913015 0.800887139 0.40841584 0.669289211 0.688478613 0.634133723 0.612161863 1 20.06189512 -10.40158588 3.820184764 1.001880362 0.636516936 0.446635563 0.120269964 53311757.38 2286.755214 882167.6272 0.027784958 3.97E-11 10.40158588 -0.365363426 HAPTYTIPLS(ph)PVLS(ph)PTLPAEAPTAQVPPSLPR ddPTM_HeLa_A485_30min_R1 4 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 0 HAPT(0.003)Y(0.001)T(0.003)IPLS(0.991)PVLS(0.948)PT(0.054)LPAEAPTAQVPPSLPR;HAPTYTIPLS(0.999)PVLS(0.943)PT(0.057)LPAEAPTAQVPPSLPR;HAPT(0.033)Y(0.006)T(0.063)IPLS(0.904)PVLS(0.925)PT(0.069)LPAEAPTAQVPPSLPR;HAPTYT(0.001)IPLS(0.999)PVLS(0.979)PT(0.021)LPAEAPTAQVPPSLPR ;;; 127.49 2.87E-06 832740000 192874 276259 239716 210318 317587 249898 329028 342745 225757 278016 TRUE FALSE FALSE 235778.1559 308565.0869 328396.9238 221807.1398 285966.9232 262982.2729 258728.4799 258686.2513 271064.3591 208711.7277 1.129683312 1.47842716 1.573447393 1.062744016 1.370152633 1.260026333 1.239645145 1.239442815 1.298750013 1 17.67115214 -13.67718015 0.156987827 1.61E-11 1.38755001 0.285926218 0.142319121 150.9543578 1.507920246 47.26379909 0.646676009 2.10E-14 13.67718015 1.38755001 HAPTYTIPLS(ph)PVLS(ph)PTLPAEAPTAQVPPSLPR ddPTM_HeLa_A486_30min_R1 4 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 0 HAPTYTIPLS(1)PVLS(0.976)PT(0.024)LPAEAPTAQVPPSLPR;HAPT(0.034)Y(0.004)T(0.039)IPLS(0.924)PVLS(0.954)PT(0.043)LPAEAPT(0.001)AQVPPSLPR;HAPT(0.001)YT(0.004)IPLS(0.991)PVLS(0.893)PT(0.111)LPAEAPTAQVPPSLPR;HAPTYTIPLS(0.999)PVLS(0.966)PT(0.034)LPAEAPTAQVPPSLPR ;;; 171.1 1.32E-14 857800000 265298 305591 239929 83911 336520 249399 308492 306208 251670 291415 TRUE FALSE FALSE 246701.9802 281374.8562 332835.9343 195349.0486 294310.5237 218630.6871 231304.0387 236491.1229 273484.9582 218442.7872 1.129366565 1.288094058 1.523675552 0.894280151 1.347311703 1.000860179 1.058876979 1.082622713 1.251975228 1 17.73689594 -5.262576463 24.99998986 1.099893857 1.311150248 0.313476925 0.150709127 127.7753877 2809294.85 0.040620825 0.064255608 5.46E-06 5.262576463 0.211256391 HAPTYTIPLS(ph)PVLSPTLPAEAPTAQVPPSLPR ddPTM_HeLa_A485_30min_R1 2 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 HAPT(0.005)YT(0.005)IPLS(0.974)PVLS(0.016)PTLPAEAPTAQVPPSLPR;HAPT(0.001)YT(0.001)IPLS(0.998)PVLS(0.001)PTLPAEAPTAQVPPSLPR ; 157.42 2.41E-10 736480000 138025 210205 188867 153312 234006 199476 235133 254433 188838 224761 TRUE FALSE FALSE 168728.1851 234786.6462 258736.7627 161687.0464 210707.541 209920.2549 184894.9137 192032.9078 226736.0545 168732.2191 0.999976092 1.391474891 1.533416463 0.958246429 1.24876886 1.24410297 1.095789024 1.138092706 1.343762653 1 17.36437595 -5.265015636 24.99939897 1.158876738 1.316607715 0.164088237 0.16501516 574.743772 4017684.221 0.04558469 0.070719687 5.43E-06 5.265015636 0.157730977 HAPTYTIPLS(ph)PVLSPTLPAEAPTAQVPPSLPR ddPTM_HeLa_A486_30min_R1 2 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 HAPT(0.007)YT(0.006)IPLS(0.987)PVLS(0.001)PTLPAEAPTAQVPPSLPR;HAPT(0.001)YT(0.001)IPLS(0.997)PVLS(0.001)PTLPAEAPTAQVPPSLPR ; 179.1 6.76E-21 708150000 270840 277290 244450 81164 316070 284360 327280 328140 299320 311580 TRUE FALSE FALSE 251855.5146 255316.5305 339107.5866 188953.8938 276425.5534 249278.5544 245391.0824 253429.6852 325265.2986 233558.34 1.078340918 1.093159553 1.451918123 0.80902225 1.183539639 1.067307442 1.050662898 1.085080864 1.392651184 1 17.83342344 -10.97817824 12.56500882 0.931548654 1.128698217 0.051451627 0.171727181 0.098589688 0.000171221 0.049781812 0.038658263 1.05E-11 10.97817824 0.197149563 HAQDSDPRS(ph)PTLGIAR ddPTM_HeLa_A485_30min_R1 4 HAQDSDPRSPTLGIAR 16 1 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 HAQDS(0.003)DPRS(0.901)PT(0.096)LGIAR;HAQDSDPRS(0.95)PT(0.05)LGIAR;HAQDSDPRS(0.99)PT(0.01)LGIAR;HAQDSDPRS(0.992)PT(0.008)LGIAR ;;; 130.36 9.36E-06 2656700000 1568470 1843610 1806880 1492720 2608410 1825690 2345030 2280060 1757200 2661910 TRUE FALSE FALSE 1917370.74 2059204.152 2475320.103 1574263.514 2348707.542 1921280.305 1843995.183 1720871.71 2109853.922 1998344.826 0.959479423 1.030454867 1.238685171 0.787783717 1.175326456 0.961435825 0.922761257 0.86114853 1.055800728 1 20.93037412 -6.492882669 24.71048083 0.947462606 1.038443751 0.088617717 0.122686896 1335.157504 1099891.951 0.04164823 0.036671839 3.21E-07 6.492882669 0.090981146 HAQDSDPRS(ph)PTLGIAR ddPTM_HeLa_A486_30min_R1 3 HAQDSDPRSPTLGIAR 16 1 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 HAQDSDPRS(0.953)PT(0.047)LGIAR;HAQDSDPRS(0.989)PT(0.011)LGIAR;HAQDSDPRS(0.99)PT(0.01)LGIAR ;; 139.02 2.08E-06 2346040000 1145980 1300880 1272150 386610 1785320 1272390 1534710 1536370 1258540 1347050 TRUE FALSE FALSE 1065652.72 1197793.531 1764760.549 900047.6182 1561388.518 1115415.459 1150709.325 1186572.09 1367631.261 1009739.912 1.055373475 1.186239661 1.747737737 0.891365794 1.546327425 1.104656204 1.139609628 1.175126461 1.354439142 1 19.9455523 HAS(ph)APSHVQPSDSEK ddPTM_HeLa_A485_30min_R1 8 HASAPSHVQPSDSEK 15 0 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 HAS(0.5)APS(0.5)HVQPSDSEK;HAS(0.996)APS(0.004)HVQPSDSEK;HAS(0.996)APS(0.004)HVQPSDSEK;HAS(0.998)APS(0.002)HVQPSDSEK;HAS(0.999)APS(0.001)HVQPSDSEK;HAS(0.999)APS(0.001)HVQPSDSEK;HAS(0.975)APS(0.025)HVQPSDSEK;HAS(0.994)APS(0.006)HVQPSDSEK ;;;;;;; 205.88 1.28E-25 9511901000 5532281 5076261 3835637 7211366 7475217 5823451 9950655 8691880 5438797 10991141 TRUE FALSE FALSE 6762917.822 5669885.566 5254598.74 7605304.664 6730958.148 6128357.89 7824616.27 6560182.802 6530313.67 8251251.826 0.819623248 0.68715459 0.63682443 0.921715253 0.815749936 0.742718562 0.948294445 0.795053034 0.791433083 1 22.97618158 -13.99999997 0.080359885 1.662390173 0.59492739 0.36501919 0.08643749 279.4744017 1.586064565 32.92954085 3.036153071 1.00E-14 13.99999997 -1.067462783 HAS(ph)APSHVQPSDSEK ddPTM_HeLa_A486_30min_R1 6 HASAPSHVQPSDSEK 15 0 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 HAS(0.908)APS(0.092)HVQPSDSEK;HAS(1)APSHVQPSDSEK;HAS(1)APSHVQPSDSEK;HAS(0.992)APS(0.008)HVQPSDSEK;HAS(0.993)APS(0.007)HVQPSDSEK;HAS(0.985)APS(0.015)HVQPSDSEK ;;;;; 214.46 1.32E-26 10888218000 6281367 5812588 3192530 1399260 5682584 6942940 8365772 7838968 5217307 8087120 TRUE FALSE FALSE 5841075.61 5351977.358 4428763.115 3257547.995 4969821.327 6086390.653 6272567.361 6054206.11 5669547.372 6062052.514 0.963547511 0.882865555 0.730571552 0.537367169 0.819824856 1.004014835 1.034726662 0.998705652 0.935252105 1 22.53137492 -6.202549167 4.778316232 0.997330849 0.772102178 0.491458307 0.105786692 0.200965521 9.619641662 0.039670991 0.039161433 6.27E-07 6.202549167 -0.225228671 HAS(ph)LQNSQR ddPTM_HeLa_A485_30min_R1 2 HASLQNSQR 9 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 1 0 HAS(1)LQNSQR;HAS(1)LQNSQR ; 70.552 0.014569 585330000 48937 57785 51522 70418 65639 57752 86560 89432 63691 99612 TRUE FALSE FALSE 59822.86682 64542.45309 70582.13181 74264.75703 59103.75069 60775.80542 68065.74887 67498.66178 76473.19949 74780.56162 0.799978838 0.863091313 0.943856669 0.993102424 0.790362487 0.812721971 0.910206441 0.902623092 1.022634731 1 16.19037569 -7.6709642 3.364937579 1.013602997 0.876069691 0.43969528 0.061085824 0.250734564 5.268762687 0.055699515 0.017280691 2.13E-08 7.6709642 -0.137533306 HAS(ph)PDKWNDKPK ddPTM_HeLa_A485_30min_R1 4 HASPDKWNDKPK 12 2 Q96JM3;A0A2R8Y4S6;S4R3K0;A0A2R8Y735 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 HAS(1)PDKWNDKPK;HAS(1)PDKWNDKPK;HAS(1)PDKWNDKPK;HAS(1)PDKWNDKPK ;;; 177.58 7.17E-12 6017400000 6663600 3876190 2058920 13620400 6388020 6232050 12979400 11401400 4429280 18801000 TRUE FALSE FALSE 8145894.831 4329476.702 2820600.187 14364447.96 5752006.299 6558350.501 10206245.16 8605188.773 5318195.868 14114256.71 0.577139484 0.306744931 0.199840505 1.017726138 0.407531648 0.464661416 0.723116022 0.60968062 0.376796028 1 23.75064982 -14 0.207923867 3.201762362 0.455463194 0.28975646 0.221622009 192.8802192 1.92038742 177.6367488 0.492126748 1.00E-14 14 -2.746299169 HAS(ph)PDKWNDKPK ddPTM_HeLa_A486_30min_R1 4 HASPDKWNDKPK 12 2 Q96JM3;A0A2R8Y4S6;S4R3K0;A0A2R8Y735 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 HAS(1)PDKWNDKPK;HAS(1)PDKWNDKPK;HAS(1)PDKWNDKPK;HAS(1)PDKWNDKPK ;;; 166.09 9.84E-11 7806850000 7557300 5848970 1644838 5795190 4474430 8873000 13313500 11045820 4521230 17098060 TRUE FALSE FALSE 7027572.296 5385476.316 2281763.324 13491495.19 3913205.267 7778339.474 9982321.484 8530927.915 4913133.857 12816594.49 0.548318222 0.420195577 0.178031951 1.052658349 0.305323327 0.606895965 0.778859119 0.66561581 0.383341602 1 23.61150964 -14 0.141703801 2.47021611 0.404455023 0.24065536 0.238278658 202.4268343 1.746214822 84.86407478 1.400492637 1.00E-14 14 -2.065761087 HAS(ph)PILPITEFSDIPR ddPTM_HeLa_A485_30min_R1 6 HASPILPITEFSDIPR 16 0 G5E972;P42167;H0YJH7 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR ;;;;; 238.7 1.52E-41 2901500000 720388 770595 560906 647936 748055 654735 763903 1010857 618851 1391315 TRUE FALSE FALSE 880635.8253 860709.382 768408.4706 683331.103 673576.0176 689015.9122 600688.8835 762942.7358 743048.7193 1044485.776 0.843128596 0.824050841 0.735681125 0.654227294 0.644887689 0.659669981 0.575104896 0.730448182 0.711401473 1 19.99436141 -8.630091927 2.178946755 0.999997248 0.703681252 0.559364902 0.07747717 11.44551724 38.23156607 0.08392967 0.022960356 2.34E-09 8.630091927 -0.296315996 HAS(ph)PILPITEFSDIPR ddPTM_HeLa_A486_30min_R1 8 HASPILPITEFSDIPR 16 0 G5E972;P42167;H0YJH7 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR;HAS(1)PILPITEFSDIPR ;;;;;;; 247.61 5.36E-42 2078265000 864076 729100 597272 209288.5 857720 652173 728601 618549 688477 758845 TRUE FALSE FALSE 803508.7345 671323.4607 828551.7139 487234.2049 750136.7597 571714.5261 546297.3234 477718.8955 748154.7407 568825.2727 1.412575659 1.180192746 1.456601444 0.856562161 1.318747242 1.005079334 0.96039566 0.839834161 1.315262835 1 19.11762604 -5.253935544 24.99975489 1.042154189 1.332830231 0.41278952 0.167714854 592.8704473 1975201.16 0.044263445 0.074793624 5.57E-06 5.253935544 0.290676041 HAS(ph)S(ph)SPESPKPAPAPGSHR ddPTM_HeLa_A485_30min_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HAS(0.649)S(0.701)S(0.649)PES(0.001)PKPAPAPGSHR 87.326 0.0018814 681580000 47315 83413 62175 49096 88906 65001 98848 106340 64852 78845 TRUE FALSE FALSE 57840.05852 93167.42475 85176.11982 51777.99016 80054.20647 68404.35185 77728.31729 80259.94827 77867.20154 59190.39253 0.977186601 1.574029513 1.439019344 0.874770177 1.352486494 1.155666467 1.313191448 1.355962426 1.315537847 1 15.8530754 HAS(ph)S(ph)SPESPKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HAS(0.869)S(0.604)S(0.527)PESPKPAPAPGSHR 109.41 0.00015363 156010000 97083 97853 56301 37015 96417 108890 132700 136680 80905 137230 TRUE FALSE FALSE 90277.98304 90098.77191 78102.25499 86172.79063 84323.48081 95456.25891 99497.05644 105560.9477 87917.91054 102866.7148 0.877620941 0.875878773 0.759256822 0.837713062 0.819735334 0.927960605 0.967242481 1.026191494 0.854677927 1 16.65041671 -6.389937382 3.466700444 0.962970136 0.832272121 0.583025273 0.051742136 0.180028743 3.977286615 0.01929044 0.01666274 4.07E-07 6.389937382 -0.130698015 HAS(ph)SSPES(ph)PKPAPAPGSHR ddPTM_HeLa_A485_30min_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HAS(0.838)S(0.067)S(0.095)PES(1)PKPAPAPGSHR 104.96 0.00019874 814220000 323600 355750 271650 540950 493410 340470 576850 560660 303020 737950 TRUE FALSE FALSE 395583.7036 397351.8679 372144.6393 570500.7287 444284.3679 358296.4827 453601.2851 423157.2559 363833.3345 553992.646 0.714059485 0.71725116 0.671750143 1.029798379 0.801967989 0.646753139 0.818785752 0.763831901 0.656747589 1 19.0795073 -11.13457311 2.497094702 1.515793819 0.762146327 0.316927034 0.106469774 7260695.5 2398473.493 21218797.69 0.027978878 7.34E-12 11.13457311 -0.753647492 HAS(ph)SSPES(ph)PKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HAS(0.546)S(0.184)S(0.271)PES(1)PKPAPAPGSHR 125.83 1.41E-05 1066800000 451240 383190 225470 137840 401030 402020 643530 553060 323890 776470 TRUE FALSE FALSE 419610.4062 352824.6288 312778.0223 320898.486 350729.0779 352422.8598 482511.9874 427140.3112 351965.046 582036.858 0.720934423 0.606189495 0.53738525 0.551337053 0.60258912 0.605499214 0.829005897 0.733871584 0.604712642 1 19.15075099 -6.746693661 24.03198769 0.769720138 0.59860468 0.437681756 0.103016391 151.9347 247617.1542 0.038664677 0.029801639 1.79E-07 6.746693661 -0.171115459 HAS(ph)SSPESPKPAPAPGSHR ddPTM_HeLa_A485_30min_R1 2 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.294)S(0.294)S(0.294)PES(0.118)PKPAPAPGSHR;HAS(0.25)S(0.25)S(0.25)PES(0.25)PKPAPAPGSHR ; 111.53 3.07E-05 1994117000 1241701 1591642 1203334 543102 1467281 1809990 1656062 2155970 1586793 833006 TRUE FALSE FALSE 1517913.104 1777770.686 1648497.322 572770.2871 1321193.352 1904758.278 1302230.825 1627214.977 1905247.8 625352.9345 2.427290286 2.842827767 2.636107117 0.915915246 2.112716322 3.045893243 2.082393402 2.602074584 3.046676037 1 19.25431112 HAS(ph)SSPESPKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 5 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.392)S(0.392)S(0.045)PES(0.172)PKPAPAPGSHR;HAS(0.25)S(0.25)S(0.25)PES(0.25)PKPAPAPGSHR;HAS(0.253)S(0.253)S(0.253)PES(0.241)PKPAPAPGSHR;HAS(0.25)S(0.25)S(0.25)PES(0.25)PKPAPAPGSHR;HAS(0.25)S(0.25)S(0.25)PES(0.25)PKPAPAPGSHR ;;;; 139.26 4.72E-07 2569730000 1128515 1304260 1095380 63029 1550070 1060882 870172 1134141 1019790 373722 TRUE FALSE FALSE 1049411.926 1200905.688 1519540.471 146734.6973 1355645.767 930001.1651 652445.7619 875921.8524 1108186.218 280139.5787 3.746032357 4.286811929 5.424226303 0.523791383 4.839179716 3.319777839 2.329002438 3.126733668 3.955835957 1 18.0957863 -9.389565966 0.194503209 7.77E-22 4.301347383 0.253300266 1.294295529 20.54795419 1.190866126 21.55793398 4.641133974 4.08E-10 9.389565966 4.301347383 HASS(ph)SPESPKPAPAPGSHR ddPTM_HeLa_A485_30min_R1 2 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.296)S(0.352)S(0.352)PESPKPAPAPGSHR;HAS(0.293)S(0.354)S(0.354)PESPKPAPAPGSHR ; 120.64 9.07E-06 352828000 57946 69165 57647 71301 98495 79565 111665 111669 65456 103776 TRUE FALSE FALSE 70835.88779 77253.24509 78973.02419 75195.99309 88688.49196 83730.90037 87806.86053 84282.00266 78592.4188 77906.55306 0.909241713 0.99161421 1.013689107 0.965207548 1.138395789 1.074760686 1.127079265 1.081834574 1.008803698 1 16.24945706 -4.833198602 0.915127332 1.074186478 0.906994076 0.452717306 0.051105479 0.918775097 1.06708264 0.019527628 0.129516279 1.47E-05 4.833198602 -0.167192402 HASS(ph)SPESPKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 3 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.29)S(0.355)S(0.355)PESPKPAPAPGSHR;HAS(0.291)S(0.354)S(0.354)PESPKPAPAPGSHR;HAS(0.298)S(0.351)S(0.351)PESPKPAPAPGSHR ;; 141.53 1.69E-08 496828000 388343 398646 215777 61741.1 407826 401289 495496 456595 317724 416180 TRUE FALSE FALSE 361122.1611 367055.8391 299331.6331 143736.401 356672.6603 351782.0432 371517.66 352638.2859 345264.5721 311965.8191 1.157569641 1.176589923 0.959501377 0.460744069 1.143306857 1.127630085 1.190892198 1.130374754 1.106738466 1 18.25102844 HASSS(ph)PES(ph)PKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HAS(0.252)S(0.345)S(0.405)PES(0.998)PKPAPAPGSHR 85.376 0.0024432 813670000 356350 297840 207330 124580 343470 381060 500170 449120 280540 593280 TRUE FALSE FALSE 331371.7052 274238.0737 287613.7285 290028.5359 300388.7899 334048.6915 375022.1757 346865.1802 304857.4331 444718.8264 0.745126326 0.616654968 0.646731623 0.652161588 0.675457777 0.751145829 0.843279289 0.779965137 0.685506021 1 18.76253395 -6.391791529 2.677514691 0.808740722 0.660870548 0.465231509 0.079698177 0.272965265 3.804222521 0.030152344 0.025736849 4.06E-07 6.391791529 -0.147870174 HASSS(ph)PESPKPAPAPGSHR ddPTM_HeLa_A485_30min_R1 2 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.176)S(0.326)S(0.498)PESPKPAPAPGSHR;HAS(0.289)S(0.289)S(0.423)PESPKPAPAPGSHR ; 151.01 8.17E-09 346610000 215392 224043 173905 228158 307194 226651 355960 349980 202914 335044 TRUE FALSE FALSE 263305.2073 250242.8799 238239.6963 240621.6938 276608.6867 238518.0959 279906.2381 264146.8563 243636.9786 251523.6968 1.046840559 0.994907768 0.947185889 0.956656159 1.099732114 0.948292741 1.112842414 1.05018676 0.968644234 1 17.9403348 -5.721168924 24.99999301 1.032521136 0.984204642 0.131485568 0.05447968 298.0411549 185023.345 0.015868011 0.020485311 1.90E-06 5.721168924 -0.048316494 HASSS(ph)PESPKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.227)S(0.227)S(0.318)PES(0.227)PKPAPAPGSHR 103.67 6.44E-05 132070000 87959 166170 159940 5014.4 198960 112020 44881 85343 91173 26868 TRUE FALSE FALSE 81793.52832 153002.084 221873.0513 11673.77661 174004.5816 98200.11134 33651.2991 65912.26192 99075.94905 20140.07792 4.06123197 7.59689633 11.01649419 0.579629168 8.639717397 4.875855582 1.670862408 3.272691506 4.919342887 1 14.29778164 -6.539010549 7.197123538 2.942823695 6.421067834 0.278965994 2.766400523 0.219297612 54.72744967 1.033307664 0.816107819 2.89E-07 6.539010549 3.478244138 HASSSPES(ph)PKPAPAPGSHR ddPTM_HeLa_A485_30min_R1 9 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HASSSPES(1)PKPAPAPGSHR;HASSSPES(1)PKPAPAPGSHR;HAS(0.101)S(0.101)S(0.101)PES(0.696)PKPAPAPGSHR;HAS(0.004)S(0.003)S(0.003)PES(0.99)PKPAPAPGSHR;HAS(0.244)S(0.244)S(0.244)PES(0.268)PKPAPAPGSHR;HASS(0.001)SPES(0.999)PKPAPAPGSHR;HAS(0.066)S(0.066)S(0.066)PES(0.801)PKPAPAPGSHR;HAS(0.241)S(0.241)S(0.241)PES(0.277)PKPAPAPGSHR;HAS(0.008)S(0.027)S(0.019)PES(0.946)PKPAPAPGSHR ;;;;;;;; 205.73 6.59E-26 4673624000 1288273 2317133 1942748 578045 2795577 2035035 2257369 2477862 1942998 1151680 TRUE FALSE FALSE 1574844.884 2588101.548 2661451.33 609622.1347 2517239.538 2141586.286 1775063.672 1870162.459 2332939.876 864587.3711 1.821498829 2.993452871 3.078290776 0.705101827 2.911492374 2.477003895 2.053076105 2.163069369 2.698327496 1 19.72165224 -10.54726944 3.213966717 0.953621092 2.326041996 0.259159606 0.670711186 337532196.3 341694184.9 132707890.2 0.164222583 2.84E-11 10.54726944 1.372420904 HASSSPES(ph)PKPAPAPGSHR ddPTM_HeLa_A486_30min_R1 8 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.003)S(0.003)S(0.003)PES(0.991)PKPAPAPGSHR;HASS(0.001)S(0.001)PES(0.997)PKPAPAPGSHR;HAS(0.239)S(0.239)S(0.239)PES(0.284)PKPAPAPGSHR;HAS(0.002)S(0.01)S(0.01)PES(0.979)PKPAPAPGSHR;HAS(0.003)S(0.014)S(0.008)PES(0.975)PKPAPAPGSHR;HAS(0.131)S(0.131)S(0.131)PES(0.608)PKPAPAPGSHR;HAS(0.235)S(0.235)S(0.235)PES(0.296)PKPAPAPGSHR;HAS(0.001)S(0.013)S(0.008)PES(0.978)PKPAPAPGSHR ;;;;;;; 143.05 1.55E-08 846064000 658763 817148 624118 48191.1 885074 526372 542881 573579 660067 239620 TRUE FALSE FALSE 612587.1156 752394.2165 865793.2041 112191.3162 774059.7659 461433.5744 407046.4318 442987.5828 717282.139 179617.5923 3.410507332 4.188867063 4.820202703 0.62461207 4.309487483 2.568977617 2.266183543 2.46628171 3.993384666 1 17.45456913 -5.675493546 0.094761766 1.36E-11 6.478410755 0.235913136 1.180414528 57.66502815 1.584526123 35.01893337 73.32068186 2.11E-06 5.675493546 6.478410755 HAT(ph)GKKSPAKSPNPSTPR ddPTM_HeLa_A486_30min_R1 1 HATGKKSPAKSPNPSTPR 18 3 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 HAT(0.506)GKKS(0.463)PAKS(0.021)PNPS(0.004)T(0.006)PR 48.641 0.018864 1115400000 726150 393670 212920 42069 645640 440480 966770 941070 313910 562620 TRUE FALSE FALSE 675250.6348 362474.1555 295368.3262 97938.75805 564657.8108 386138.0561 724873.9205 726808.9044 341119.9715 421736.29 1.601120537 0.85948059 0.700362604 0.232227485 1.338888363 0.915591248 1.71878479 1.723372927 0.808846617 1 18.68598164 HAYGDQYR ddPTM_HeLa_A485_30min_R1 2 HAYGDQYR 8 0 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 ; ; 123.98 0.0021879 154463000 115238 154827 163892 129067 175499 166243 189584 208460 125982 162953 FALSE FALSE TRUE 140872.2955 172932.6708 224522.4709 136117.6034 158025.7033 174947.2264 149077.8296 157334.8581 151265.4318 122331.816 1.151558933 1.413636096 1.835356314 1.112691758 1.291779265 1.430104057 1.218634976 1.286131959 1.236517504 1 16.90044014 -8.347627636 0.352997647 0.956112802 1.416340934 0.253708983 0.188163653 3.29759164 0.922588503 0.485008178 0.191594097 4.49E-09 8.347627636 0.460228132 HAYGDQYR ddPTM_HeLa_A486_30min_R1 2 HAYGDQYR 8 0 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 ; ; 115.49 0.0034022 135020000 61604 69596 76381 24594 91906 70278 71410 68854 72045 75957 FALSE FALSE TRUE 57285.87772 64080.9595 105957.7688 57256.07491 80378.29249 61607.81489 53542.4627 53177.44727 78289.91861 56936.8728 1.006129682 1.125473816 1.860969237 1.005606246 1.411708942 1.082037208 0.94038292 0.933972041 1.375030183 1 15.79707564 -6.377082959 6.569612976 1.051079605 1.289514042 0.148429279 0.257504259 0.471337087 23.95243941 0.091536518 0.080462364 4.20E-07 6.377082959 0.238434437 HAYKDDS(ph)PR ddPTM_HeLa_A485_30min_R1 4 HAYKDDSPR 9 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 HAYKDDS(1)PR;HAY(0.001)KDDS(0.999)PR;HAYKDDS(1)PR;HAYKDDS(1)PR ;;; 94.538 0.0013702 846119000 1551050 1248596 631500 3445090 896368 1404770 1631000 1849870 1445906 3607190 TRUE FALSE FALSE 1896075.721 1394608.441 865118.1289 3633286.543 807122.4546 1478321.585 1282523.526 1396186.482 1736086.072 2707983.918 0.700179831 0.51499879 0.319469448 1.341694284 0.298052898 0.545912247 0.47360825 0.515581526 0.641099107 1 21.36878774 -8.043676209 18.78172895 1.000000008 0.586840786 0.164785417 0.276092616 550.3119508 236648.8494 0.260066405 0.067148832 9.04E-09 8.043676209 -0.413159221 HAYKDDS(ph)PR ddPTM_HeLa_A486_30min_R1 4 HAYKDDSPR 9 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 HAYKDDS(1)PR;HAYKDDS(1)PR;HAYKDDS(1)PR;HAYKDDS(1)PR ;;; 114.71 0.00034734 712900000 1169510 570216 958050 1016800 507166 2795910 1327330 1210630 1944060 2330820 TRUE FALSE FALSE 1087533.388 525030.0075 1329032.617 2367161.786 443552.5111 2450979.051 995217.9949 934995.9769 2112572.686 1747167.501 0.622455138 0.300503533 0.760678422 1.35485681 0.253869484 1.402830038 0.569617964 0.535149593 1.209141473 1 20.7365865 -4.927573636 6.590602296 0.878333823 0.469789052 0.189997532 0.35804944 0.340164936 24.55206683 0.089422465 0.188811386 1.18E-05 4.927573636 -0.408544771 HCAPS(ph)PDRS(ph)PELSSSR ddPTM_HeLa_A485_30min_R1 7 HCAPSPDRSPELSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(0.998)PELS(0.002)SSR ;;;;;; 181.87 1.27E-17 23250650000 2296710 3099530 3051300 2775580 4003290 2770780 3807150 3711750 2844430 3589280 TRUE FALSE FALSE 2807605.216 3461993.071 4180102.845 2927202.907 3604708.391 2915853.756 2993721.301 2801437.493 3415281.01 2694538.552 1.04196142 1.284818534 1.551324193 1.086346642 1.337783194 1.082134733 1.111033019 1.039672448 1.267482704 1 21.3616068 -6.272221227 24.3366907 1.103229624 1.268288407 0.231976678 0.145505869 772.2083149 1743016.29 0.050670615 0.045149218 5.34E-07 6.272221227 0.165058783 HCAPS(ph)PDRS(ph)PELSSSR ddPTM_HeLa_A486_30min_R1 6 HCAPSPDRSPELSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(1)PELSSSR;HCAPS(1)PDRS(0.987)PELS(0.012)S(0.001)SR;HCAPS(1)PDRS(0.999)PELSSSR;HCAPS(1)PDRS(1)PELSSSR ;;;;; 190.37 5.53E-18 21743960000 4771890 5515320 4453160 1879889 6108610 4854580 5758670 5823920 4600190 5455980 TRUE FALSE FALSE 4437405.153 5078265.957 6177542.812 4376476.596 5342411.173 4255671.277 4317789.857 4497940.551 4998938.173 4089767.096 1.085001921 1.241700527 1.51048768 1.070104115 1.306287387 1.04056568 1.055754461 1.099803594 1.222303876 1 21.96358726 -6.26378026 24.95198935 1.088177554 1.247946512 0.282771197 0.126399314 288.7429307 3077759.112 0.043638817 0.040319592 5.45E-07 6.26378026 0.159768959 HCAPS(ph)PDRSPELSSSR ddPTM_HeLa_A485_30min_R1 4 HCAPSPDRSPELSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 HCAPS(0.711)PDRS(0.289)PELSSSR;HCAPS(1)PDRSPELSSSR;HCAPS(1)PDRSPELSSSR;HCAPS(1)PDRSPELSSSR ;;; 181.32 5.80E-18 2540310000 372298 523743 492311 418336 624392 473955 590209 601271 442370 563107 TRUE FALSE FALSE 455114.4057 584990.1879 674437.3257 441188.6364 562225.3401 498770.5509 464106.0256 453808.3445 531149.6013 422734.7881 1.076595583 1.383823154 1.595414772 1.043653489 1.329971784 1.179866349 1.097865704 1.073506031 1.25646059 1 18.68939332 -6.184559035 1.084414158 1.108605332 1.32120507 0.215443747 0.157603243 0.774811429 1.913236307 0.0828455 0.080555832 6.54E-07 6.184559035 0.212599738 HCAPS(ph)PDRSPELSSSR ddPTM_HeLa_A486_30min_R1 5 HCAPSPDRSPELSSSR 16 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 HCAPS(0.996)PDRS(0.004)PELSSSR;HCAPS(1)PDRSPELSSSR;HCAPS(0.854)PDRS(0.146)PELSSSR;HCAPS(0.986)PDRS(0.014)PELSSSR;HCAPS(0.975)PDRS(0.025)PELSSSR ;;;; 183.22 5.09E-18 1745820000 615706 687164 566258 198052 801900 607591 704276 700369 592244 676911 TRUE FALSE FALSE 572548.1889 632710.622 785528.2625 461075.065 701318.2246 532632.6 528058.6957 540910.2676 643580.1868 507408.0796 1.128378147 1.246946289 1.548119342 0.90868688 1.382158173 1.049712492 1.040698241 1.066026122 1.268368031 1 18.95278697 -5.922546534 1.176995254 1.093070042 1.265469439 0.133727825 0.172657914 0.950752185 2.7843041 0.075279486 0.093477042 1.20E-06 5.922546534 0.172399397 HCGLSLSST(ph)PPGK ddPTM_HeLa_A485_30min_R1 4 HCGLSLSSTPPGK 13 0 D6R9S4;Q09GN1;Q71F23-3;Q71F23 D6R9S4 CENPU;MLF1IP Centromere protein U 1 0 HCGLSLS(0.011)S(0.233)T(0.755)PPGK;HCGLSLS(0.002)S(0.048)T(0.95)PPGK;HCGLSLSS(0.027)T(0.973)PPGK;HCGLSLSS(0.254)T(0.746)PPGK ;;; 148.41 9.21E-08 1687400000 757520 869620 709585 723110 1143010 774100 1131670 1004560 812270 1147920 TRUE FALSE FALSE 926027.7106 971314.4943 972090.0198 762611.6683 1029207.911 814630.679 889879.4596 758190.0849 975285.1384 861764.6699 1.07457145 1.127122668 1.128022596 0.884941905 1.194302745 0.945305264 1.032624672 0.879811057 1.131730242 1 19.71693443 HCGLSLSST(ph)PPGK ddPTM_HeLa_A486_30min_R1 3 HCGLSLSSTPPGK 13 0 D6R9S4;Q09GN1;Q71F23-3;Q71F23 D6R9S4 CENPU;MLF1IP Centromere protein U 1 0 HCGLSLS(0.012)S(0.376)T(0.611)PPGK;HCGLSLSS(0.255)T(0.745)PPGK;HCGLSLSS(0.28)T(0.72)PPGK ;; 148.57 9.08E-08 934510000 1007200 1037480 617630 95615 1025760 948420 1110850 1045250 844930 800990 TRUE FALSE FALSE 936600.4812 955266.3064 856792.8767 222596.5521 897099.616 831413.5832 832903.5806 807269.3926 918169.2127 600416.8904 1.559916945 1.591005053 1.426996626 0.370736659 1.494127881 1.384727173 1.387208778 1.344514795 1.529219493 1 19.19560504 HCILSWLGNCLHANAGR ddPTM_HeLa_A485_30min_R1 1 HCILSWLGNCLHANAGR 17 0 Q14139;Q14139-2 Q14139 UBE4A Ubiquitin conjugation factor E4 A 0 0 81.311 0.0028439 11462000 18046 41639 54655 8375.3 23468 46895 21490 43602 47739 12907 FALSE FALSE TRUE 22060.27044 46508.31884 74874.15888 8832.821432 21131.44352 49350.34969 16898.48594 32908.54113 57319.77941 9689.522436 2.276713903 4.799856664 7.727332217 0.911584806 2.180855007 5.093166357 1.74399575 3.39630166 5.915645461 1 13.24220985 -5.275006809 24.99375431 3.005790408 4.921156831 0.183699578 1.963182346 1398.432368 2576172.056 0.556660864 0.830740058 5.31E-06 5.275006809 1.915366423 HCILSWLGNCLHANAGR ddPTM_HeLa_A486_30min_R1 1 HCILSWLGNCLHANAGR 17 0 Q14139;Q14139-2 Q14139 UBE4A Ubiquitin conjugation factor E4 A 0 0 115.82 5.61E-05 14559000 4450.9 5390.3 5238.1 3202.6 7497.7 6195.1 6785.7 7305.6 5037.7 6675.7 FALSE FALSE TRUE 4138.914894 4963.152997 7266.432601 7455.81465 6557.268553 5430.811549 5087.846088 5642.27436 5474.371892 5004.061268 0.827111155 0.991824986 1.452107041 1.48995271 1.310389342 1.085280787 1.016743364 1.127539024 1.093985784 1 12.28888374 -6.361049594 6.844751574 1.068075494 1.230115129 0.134024967 0.188156733 0.590540643 35.00820791 0.075168748 0.066137552 4.35E-07 6.361049594 0.162039635 HCLGVFFPVFAYASR ddPTM_HeLa_A485_30min_R1 2 HCLGVFFPVFAYASR 15 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 0 0 ; ; 187.57 1.32E-11 64161000 44765 58884 59836 58669 76447 46577 80916 71843 36544 77971 FALSE FALSE TRUE 54722.81981 65769.97158 81971.82638 61873.93891 68835.66826 49015.6997 63627.63558 54223.3916 43878.0456 58534.26465 0.934885236 1.123614894 1.400407554 1.057055031 1.175989289 0.837384735 1.087015203 0.926352999 0.749612998 1 15.83699377 -6.251695768 24.80118436 0.925904125 1.147607426 0.385361697 0.137513992 679.7661726 1730263.833 0.046545409 0.045974582 5.60E-07 6.251695768 0.221703302 HCLGVFFPVFAYASR ddPTM_HeLa_A486_30min_R1 2 HCLGVFFPVFAYASR 15 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 0 0 ; ; 166.38 2.56E-08 71325000 43551 59262 49510 19980.4 64018 51337 76359 69045 64019 68839 FALSE FALSE TRUE 40498.2998 54565.86329 68681.59792 46515.38095 55988.2655 45003.5629 57253.17056 53324.96074 69568.21847 51601.26633 0.78483151 1.057452019 1.331006055 0.901438749 1.085017277 0.872140668 1.10953034 1.033404111 1.348188202 1 15.65511885 -7.58398415 24.99946416 1.179663012 1.029078975 0.122301542 0.162118638 148.6229212 60801.23766 0.106328737 0.040188489 2.61E-08 7.58398415 -0.150584037 HCQENK(ac)CPVPFCLNIK ddPTM_HeLa_A485_30min_R1 1 HCQENKCPVPFCLNIK 16 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 HCQENK(1)CPVPFCLNIK 132.59 5.84E-06 47509000 39034 47165 37589 46195 65145 53204 74876 88285 52057 70709 FALSE TRUE FALSE 47716.97863 52680.53647 51494.73531 48718.51588 58658.93506 55989.67917 58878.13092 66632.96532 62504.3624 53082.5476 0.898920282 0.99242668 0.970087866 0.917787824 1.10505124 1.05476624 1.10918058 1.255270674 1.177493644 1 15.69594999 -6.108029708 1.156638655 1.154761126 0.945180296 0.556926914 0.072127573 0.332174935 0.928806627 0.034539789 0.035901666 7.80E-07 6.108029708 -0.20958083 HCQENK(ac)CPVPFCLNIK ddPTM_HeLa_A486_30min_R1 2 HCQENKCPVPFCLNIK 16 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; HCQENK(1)CPVPFCLNIK;HCQENK(1)CPVPFCLNIK 130.21 8.49E-06 118085000 71883 87711 64432 43715 108067 95682 120307 114048 80527 117803 FALSE TRUE FALSE 66844.3729 80760.46092 89381.79595 101770.7292 94512.22918 83877.72766 90204.91612 88081.76005 87507.1452 88304.36203 0.756977021 0.914569327 1.012201367 1.152499456 1.070300798 0.949870717 1.021522766 0.997479151 0.990971943 1 16.43019708 -4.4264119 2.259685781 1.027841252 0.735317218 0.720498776 0.051795591 0.245543445 1.882562393 0.015317131 0.123797612 3.75E-05 4.4264119 -0.292524034 HDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A485_30min_R1 4 HDDGTQSDSENAGAHR 16 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 HDDGTQS(1)DSENAGAHR;HDDGT(0.001)QS(0.999)DSENAGAHR;HDDGT(0.018)QS(0.982)DSENAGAHR;HDDGT(0.002)QS(0.998)DSENAGAHR ;;; 260.24 8.20E-51 733570000 277545 238225 293928 528558 415152 204768 344132 264385 345746 716180 TRUE FALSE FALSE 339283.9277 266083.3415 402664.1986 557431.7852 373818.0092 215489.3358 270605.3869 199544.1642 415134.0508 537649.5063 0.631050385 0.494901117 0.748934378 1.036794005 0.695281972 0.40079891 0.503311886 0.371141723 0.772127652 1 19.03630646 -8.006514285 24.64769331 1.00000003 0.614685449 0.305843291 0.182968679 278.7445188 1054672.957 0.196813571 0.050817046 9.85E-09 8.006514285 -0.385314581 HDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A486_30min_R1 4 HDDGTQSDSENAGAHR 16 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 HDDGTQS(1)DSENAGAHR;HDDGTQS(1)DSENAGAHR;HDDGT(0.02)QS(0.974)DS(0.006)ENAGAHR;HDDGTQS(1)DSENAGAHR ;;; 299.47 8.07E-68 1047470000 444229 707465 543827 214619 684739 698174 789440 740636 716161 597961 TRUE FALSE FALSE 413090.8411 651402.8969 754411.3786 499643.8782 598852.6497 612040.3904 591913.7622 572009.3508 778238.4121 448227.6735 0.921609409 1.453285764 1.68309862 1.114710018 1.336045686 1.365467655 1.320564965 1.276158043 1.736256947 1 18.7738722 HDDGTQS(ph)DSENAGAHRR ddPTM_HeLa_A485_30min_R1 4 HDDGTQSDSENAGAHRR 17 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 HDDGTQS(0.998)DS(0.002)ENAGAHRR;HDDGTQS(1)DSENAGAHRR;HDDGTQS(1)DSENAGAHRR;HDDGTQS(0.999)DS(0.001)ENAGAHRR ;;; 218.88 3.68E-34 1646350000 151824 163318 193817 202069 220440 140285 191907 158418 187148 222229 TRUE FALSE FALSE 185596.725 182416.6194 265517.9737 213107.5178 198492.2196 147630.1057 150904.5017 119565.7371 224706.887 166831.4001 1.112480773 1.09341898 1.591534768 1.277382541 1.189777341 0.884905992 0.904532969 0.71668605 1.346910035 1 17.34803133 -6.116107491 3.958937387 0.949623846 1.275511723 0.344741999 0.195337006 0.2614834 7.118361478 0.067098561 0.06782676 7.65E-07 6.116107491 0.325887877 HDDGTQS(ph)DSENAGAHRR ddPTM_HeLa_A486_30min_R1 3 HDDGTQSDSENAGAHRR 17 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 HDDGTQS(0.999)DS(0.001)ENAGAHRR;HDDGTQS(1)DSENAGAHRR;HDDGT(0.001)QS(0.997)DS(0.002)ENAGAHRR ;; 180.8 1.22E-17 1674240000 101397 123759 133989 36629.1 154939 126748 136040 138880 151109 105032 TRUE FALSE FALSE 94289.59391 113951.8861 185873.1291 85274.39593 135505.1059 111111.1204 102001.3531 107260.0557 164207.2498 78731.30356 1.197612508 1.447351701 2.360854206 1.083106618 1.721108374 1.41126992 1.295562864 1.362355898 2.085666595 1 16.26464974 HDGGS(ph)PSIK ddPTM_HeLa_A485_30min_R1 4 HDGGSPSIK 9 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 HDGGS(1)PSIK;HDGGS(1)PSIK;HDGGS(1)PSIK;HDGGS(0.999)PS(0.001)IK ;;; 138.63 0.00011176 1888870000 1993330 2014060 1338640 2801780 2429350 2008440 3409870 3484740 1889000 3746320 TRUE FALSE FALSE 2436739.382 2249586.797 1833858.641 2954834.147 2187475.384 2113598.813 2681323.418 2630102.051 2268104.973 2812431.37 0.866417367 0.799872602 0.652054539 1.050633334 0.777788005 0.751520139 0.953382702 0.935170216 0.806457003 1 21.42338646 -13.99999442 0.099010434 1.524430057 0.731152858 0.18122471 0.106527593 322.0088672 2.170103206 34.52566048 1.870829046 1.00E-14 13.99999442 -0.793277199 HDGGS(ph)PSIK ddPTM_HeLa_A486_30min_R1 4 HDGGSPSIK 9 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 HDGGS(1)PSIK;HDGGS(0.521)PS(0.479)IK;HDGGS(0.999)PS(0.001)IK;HDGGS(1)PSIK ;;; 115.29 0.00050282 1133030000 2545470 1992340 1353910 781520 1979500 2667710 2968200 2427940 2054280 3120530 TRUE FALSE FALSE 2367045.698 1834459.722 1878180.211 1819418.056 1731212.652 2338595.063 2225524.966 1875151.064 2232346.644 2339128.977 1.011934665 0.784249069 0.802939996 0.777818613 0.740109959 0.999771747 0.951433199 0.801645006 0.954349532 1 21.15753998 -6.263720768 24.99896625 0.929667289 0.8175647 0.314535273 0.086032838 277.9366593 3045555.289 0.030045192 0.02777981 5.45E-07 6.263720768 -0.112102589 HDHAVSLLTAAS(ph)PTIALLLER ddPTM_HeLa_A485_30min_R1 2 HDHAVSLLTAASPTIALLLER 21 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 HDHAVS(0.007)LLT(0.008)AAS(0.977)PT(0.008)IALLLER;HDHAVSLLTAAS(1)PTIALLLER ; 258.55 4.94E-59 75707000 17116.8 15111.6 13266.8 16372.3 17600.5 15674.9 18586.8 20573.2 14698.3 25016.9 TRUE FALSE FALSE 20924.37311 16878.77017 18174.7414 17266.67729 15848.13242 16495.61353 14615.57834 15527.59044 17648.11399 18780.64723 1.114145474 0.898732081 0.967737755 0.919386701 0.843854433 0.878330407 0.778225487 0.826786758 0.939696794 1 14.19695916 -1 0.759522972 0.870626662 44.42783606 0.496546468 0.064808134 321.4773858 1.328426124 0.023743559 23986.47615 0.1 1 43.55720939 HDHAVSLLTAAS(ph)PTIALLLER ddPTM_HeLa_A486_30min_R1 1 HDHAVSLLTAASPTIALLLER 21 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 HDHAVSLLTAAS(0.868)PT(0.132)IALLLER 136.34 3.89E-07 42733000 38709 37420 36079 8288.5 52011 36591 34449 34710 40606 39754 TRUE FALSE FALSE 35995.69899 34454.70292 50049.75503 19296.04688 45487.2954 32076.77445 25829.49584 26807.29071 44125.76077 29799.33964 1.20793613 1.156223706 1.679559199 0.647532701 1.526453134 1.07642568 0.866780813 0.899593448 1.48076304 1 14.86299274 -6.496069899 24.81265105 1.041729354 1.236965455 0.081721035 0.296611997 1697.044327 1570684.892 0.101186454 0.088972337 3.19E-07 6.496069899 0.195236101 HDKS(ph)STEEEMEIEK ddPTM_HeLa_A486_30min_R1 1 HDKSSTEEEMEIEK 14 1 Q14789-4;Q14789-3;Q14789;Q14789-2;H0Y867;E7EU81 Q14789-4 GOLGB1 Golgin subfamily B member 1 1 0 HDKS(0.945)S(0.016)T(0.039)EEEMEIEK 154.84 1.75E-07 0 76821 81929 48659 50239 80970 106240 157170 119850 77235 172120 TRUE FALSE FALSE 71436.2446 75436.64766 67501.06793 116958.9309 70813.98758 93133.18897 117844.4036 92562.77131 83929.79199 129020.0317 0.55368336 0.584689421 0.52318285 0.906517611 0.548860411 0.721850613 0.913380675 0.717429457 0.650517527 1 16.97723555 -7.272251695 0.065311869 1.515591429 1.41E-11 0.449837485 0.121603017 22.58156153 1.439601613 15.77557668 16.53963215 5.34E-08 7.272251695 -1.515591429 HDS(ph)DT(ph)SPPRR ddPTM_HeLa_A486_30min_R1 2 HDSDTSPPRR 10 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(0.981)DT(0.559)S(0.46)PPRR;HDS(1)DT(0.545)S(0.455)PPRR ; 55.314 0.013765 70307000 139627 140033 113099 73367 168821 138837 175509 173266 140935 185416 TRUE FALSE FALSE 129839.8683 128936.2751 156893.9617 170802.0838 147645.896 121708.7025 131594.7919 133817.1142 153151.3593 138986.6267 0.934189651 0.927688355 1.128842144 1.228910204 1.062302895 0.875686427 0.946816215 0.962805684 1.101914356 1 17.08458655 -6.085938149 24.99994441 0.97273736 1.062917345 0.139155322 0.097147714 164.4971668 47849.9931 0.035475164 0.035475174 8.20E-07 6.085938149 0.090179984 HDS(ph)DTS(ph)PPRR ddPTM_HeLa_A485_30min_R1 1 HDSDTSPPRR 10 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)DT(0.157)S(0.843)PPRR 86.756 0.0016679 521080000 352110 483410 447900 594450 670230 373030 684570 593280 427680 737990 TRUE FALSE FALSE 430435.6547 539940.5944 613596.8487 626923.2983 603499.5479 392561.274 538306.0271 447777.1498 513511.4531 554022.6747 0.776927867 0.974582123 1.107530209 1.131584188 1.08930478 0.708565356 0.971631761 0.808228923 0.926878044 1 19.0795855 -6.231339682 24.99907517 0.876610741 1.025193558 0.229593317 0.120872649 998.6387222 829412.3338 0.040804243 0.040798765 5.87E-07 6.231339682 0.148582817 HDS(ph)DTS(ph)PPRR ddPTM_HeLa_A486_30min_R1 1 HDSDTSPPRR 10 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)DT(0.126)S(0.874)PPRR 95.345 0.0010761 484750000 746490 781640 585060 424060 901920 727270 1089200 936540 727720 1130900 TRUE FALSE FALSE 694164.9059 719699.9997 811610.9005 987233.1108 788792.7835 637546.8217 816670.6396 723310.2865 790799.3555 847715.2791 0.81886563 0.848987882 0.957409782 1.164581004 0.930492588 0.752076596 0.963378459 0.853246726 0.932859623 1 19.69322026 -6.009506735 24.99947421 0.889104365 0.954437742 0.035645559 0.106517548 1424.618854 3746270.608 0.035949643 0.038562503 9.78E-07 6.009506735 0.065333377 HDS(ph)PDLAPNVTYSLPR ddPTM_HeLa_A485_30min_R1 3 HDSPDLAPNVTYSLPR 16 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR ;; 196.31 3.49E-19 2087490000 694420 750090 671610 1065680 1099650 649810 1054750 949100 705290 1368060 TRUE FALSE FALSE 848891.3333 837806.5006 920066.487 1123895.4 990164.9849 683833.0468 829394.046 716331.7369 846835.2337 1027027.819 0.82655145 0.815758332 0.89585352 1.094318361 0.964107268 0.665836927 0.807567264 0.697480364 0.82454946 1 19.97004383 -6.241651947 24.99587097 0.780709345 0.921983172 0.21806673 0.111086448 1145.986555 1447633.501 0.037576841 0.037526707 5.73E-07 6.241651947 0.141273827 HDS(ph)PDLAPNVTYSLPR ddPTM_HeLa_A486_30min_R1 4 HDSPDLAPNVTYSLPR 16 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR ;;; 174.95 1.15E-12 3029030000 1589590 1726790 1209200 726530 1978570 1754060 2127850 1991920 1613620 2162080 TRUE FALSE FALSE 1478167.95 1589952.872 1677434.623 1691398.557 1730399.301 1537661.911 1595439.424 1538403.299 1753489.881 1620681.095 0.912065893 0.981039932 1.035018319 1.043634409 1.067698825 0.948775127 0.984425269 0.949232581 1.081946279 1 20.62816881 -4.348222752 3.082725294 1.011553235 0.905367724 0.339130413 0.042988156 0.364458006 5.50030963 0.011426788 0.083064075 4.49E-05 4.348222752 -0.106185511 HDS(ph)PDPS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 HDSPDPSPPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)PDPS(1)PPR;HDS(1)PDPS(1)PPR ; 122.46 0.00031643 973700000 784510 890140 853850 1158480 1302060 718560 1200300 964340 816960 1536360 TRUE FALSE FALSE 959021.543 994234.1298 1169724.647 1221764.829 1172422.335 756182.6905 943846.0995 727834.103 980916.3784 1153373.727 0.831492448 0.862022523 1.014176602 1.059296567 1.016515556 0.65562677 0.818335009 0.63104793 0.850475744 1 20.13742863 -6.250493906 24.90703141 0.769739954 0.960333714 0.32700948 0.116735177 736.4466411 1675826.253 0.038640713 0.038276343 5.62E-07 6.250493906 0.19059376 HDS(ph)PDPS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 HDSPDPSPPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)PDPS(1)PPR;HDS(1)PDPS(1)PPR;HDS(1)PDPS(1)PPR;HDS(1)PDPS(1)PPR ;;; 98.105 0.0041572 973590000 1852986 2226125 1504776 844846 2059694 2043616 2374888 2235209 1894938 2523293 TRUE FALSE FALSE 1723101.25 2049718.748 2087465.566 1966844.184 1801347.973 1791495.436 1780665.903 1726300.705 2059192.752 1891444.009 0.910997757 1.083679315 1.103635929 1.039863816 0.952366533 0.94715753 0.941431993 0.912689298 1.088688188 1 20.85105664 -5.752822408 22.99512199 0.966413971 1.042989044 0.161588951 0.065515493 105.2057855 280745.5599 0.019407544 0.024594624 1.77E-06 5.752822408 0.076575073 HDS(ph)PDPS(ph)PPRR ddPTM_HeLa_A485_30min_R1 2 HDSPDPSPPRR 11 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)PDPS(1)PPRR;HDS(1)PDPS(1)PPRR ; 94.09 0.00098713 1448050000 368600 462820 417260 529410 658420 411630 636090 563190 413240 688150 TRUE FALSE FALSE 450593.7983 516942.773 571621.8376 558330.3278 592865.3929 433182.3103 500184.1751 425066.7695 496173.4775 516606.8695 0.872217977 1.000650211 1.106492909 1.080764428 1.147614227 0.838514422 0.968210461 0.822805105 0.960446922 1 18.9787073 -6.269569466 24.98281289 0.910059145 1.045062601 0.337556203 0.086113096 693.2597834 2130300.912 0.030666645 0.027510184 5.38E-07 6.269569466 0.135003456 HDS(ph)PDPS(ph)PPRR ddPTM_HeLa_A486_30min_R1 2 HDSPDPSPPRR 11 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)PDPS(1)PPRR;HDS(1)PDPS(1)PPRR ; 117.08 0.00013019 1447820000 1000500 1066060 787000 516770 1258780 1043550 1387820 1292520 985320 1417270 TRUE FALSE FALSE 930370.1166 981581.5231 1091747.477 1203066.676 1100892.075 914807.411 1040572.757 998241.4115 1070728.331 1062376.367 0.875744365 0.923948945 1.027646614 1.132429818 1.036254296 0.861095408 0.979476567 0.939630664 1.007861587 1 20.01886353 -4.58051729 4.559368951 0.996211634 0.885296226 0.274849147 0.065741021 0.273116517 11.40401712 0.018885566 0.057097755 2.63E-05 4.58051729 -0.110915408 HDS(ph)PDPS(ph)PPRRPQHNS(ph)SGASPR ddPTM_HeLa_A485_30min_R1 2 HDSPDPSPPRRPQHNSSGASPR 22 2 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 3 0 HDS(1)PDPS(0.999)PPRRPQHNS(0.41)S(0.356)GAS(0.235)PR;HDS(1)PDPS(0.992)PPRRPQHNS(0.386)S(0.353)GAS(0.269)PR ; 92.198 0.0014071 541589000 92844 255612 255383 64573 357903 159811 226000 224872 182734 112516 TRUE FALSE FALSE 113496.8275 285503.5999 349859.7991 68100.45948 322268.9206 168178.4568 177713.2537 169721.7894 219407.0377 84467.8319 1.34366924 3.380027561 4.141929433 0.806229519 3.815285812 1.991035558 2.103916364 2.009306805 2.597521834 1 16.3661144 -9.889480383 0.24641564 0.063078835 2.815026354 0.16509883 1.000712264 25.09311785 1.541632247 18.41125378 1.755151403 1.29E-10 9.889480383 2.751947519 HDS(ph)PDPS(ph)PPRRPQHNS(ph)SGASPR ddPTM_HeLa_A486_30min_R1 3 HDSPDPSPPRRPQHNSSGASPR 22 2 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 3 0 HDS(1)PDPS(0.996)PPRRPQHNS(0.397)S(0.354)GAS(0.253)PR;HDS(1)PDPS(0.95)PPRRPQHNS(0.414)S(0.381)GAS(0.255)PR;HDS(1)PDPS(0.956)PPRRPQHNS(0.402)S(0.366)GAS(0.276)PR ;; 86.982 0.001921 774261000 220653 270634 271559 26589.5 366323 159831 207624 201952 247180 90265 TRUE FALSE FALSE 205186.3642 249187.9762 376713.9174 61901.69976 320375.3535 140112.6763 155674.2792 155971.9382 268605.7614 67662.05647 3.032517409 3.682831844 5.567580074 0.914865775 4.734933731 2.070771767 2.300761864 2.305161065 3.969813739 1 16.04605941 -5.814183608 0.944195703 2.443341673 3.825161637 0.14310549 1.347043217 1.187916777 2.292206692 0.644329984 0.962435646 1.53E-06 5.814183608 1.381819964 HDS(ph)PEDVK ddPTM_HeLa_A485_30min_R1 3 HDSPEDVK 8 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 0 HDS(1)PEDVK;HDS(1)PEDVK;HDS(1)PEDVK ;; 175.07 1.49E-05 7649810000 6695110 4827270 3290130 12183350 7255450 4321980 10023530 7003160 4945660 15483100 TRUE FALSE FALSE 8184414.122 5391777.235 4507286.001 12848895.56 6533071.923 4548272.19 7881920.931 5285624.029 5938208.598 11623448.12 0.704129621 0.463870719 0.387775293 1.105428908 0.562059714 0.391301458 0.678105228 0.454738041 0.510881843 1 23.47053477 -10.09616289 4.611951815 1.000024228 0.582886819 0.276109344 0.201939467 275865340.2 4.716031333 82907.68812 0.049374925 8.01E-11 10.09616289 -0.417137409 HDS(ph)PEDVK ddPTM_HeLa_A486_30min_R1 4 HDSPEDVK 8 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 0 HDS(1)PEDVK;HDS(1)PEDVK;HDS(1)PEDVK;HDS(1)PEDVK ;;; 183.78 6.78E-06 8100560000 8736660 7021070 3949670 6215160 6501620 10557170 14101120 11125650 6710520 15590210 TRUE FALSE FALSE 8124265.25 6464694.843 5479088 14469206.58 5686126.194 9254733.703 10572870.63 8592582.366 7292193.277 11686319.94 0.695194492 0.553184824 0.468846312 1.238131991 0.486562598 0.791928832 0.90472199 0.735268451 0.623993979 1 23.47831736 -13.99999999 0.036906679 2.163646099 1.20E-07 0.129428504 0.215359529 2162.384873 5.963605432 301.3704616 99.19001257 1.00E-14 13.99999999 -2.163645979 HDS(ph)PEDVKR ddPTM_HeLa_A485_30min_R1 6 HDSPEDVKR 9 1 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 0 HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR ;;;;; 151.55 3.72E-05 13280050000 5651580 4466970 3474590 10095000 7472650 4654760 9053740 6960440 4601230 13393480 TRUE FALSE FALSE 6908754.473 4989343.284 4759985.431 10646464.29 6728646.728 4898476.036 7119334.487 5253381.176 5524654.656 10054731.92 0.687114736 0.496218429 0.473407493 1.058851133 0.669202001 0.487181167 0.70805811 0.522478492 0.549458175 1 23.26137128 -10.90366957 2.780953626 1.200436342 0.628567824 0.311221626 0.166022851 93770419.42 66256354.58 123290747.6 0.045513939 1.25E-11 10.90366957 -0.571868517 HDS(ph)PEDVKR ddPTM_HeLa_A486_30min_R1 7 HDSPEDVKR 9 1 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 0 HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR;HDS(1)PEDVKR ;;;;;; 153.74 2.96E-05 13777660000 5445270 5159930 2473223 3480130 4746270 6493770 8612660 7545180 4191850 8805280 TRUE FALSE FALSE 5063584.692 4751038.355 3430921.181 8101918.516 4150948.559 5692634.681 6457681.373 5827307.224 4555202.933 6600380.575 0.767165565 0.71981279 0.519806569 1.227492631 0.628895336 0.862470674 0.978380155 0.882874428 0.690142467 1 22.65411778 -5.205962404 24.9999298 0.88181004 0.674016909 0.276872006 0.166860354 422.5317447 190407.1848 0.043631808 0.07557247 6.22E-06 5.205962404 -0.207793131 HDS(ph)PEDVKRR ddPTM_HeLa_A485_30min_R1 3 HDSPEDVKRR 10 2 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 0 HDS(1)PEDVKRR;HDS(1)PEDVKRR;HDS(1)PEDVKRR ;; 160.38 2.71E-07 2804470000 684196 1145970 724453 653292 1597880 1240250 2039110 3199120 810014 1007130 TRUE FALSE FALSE 836393.0398 1279981.223 992458.3117 688979.6877 1438789.457 1305187.572 1603437.491 2414530.804 972576.3799 756071.0259 1.106236069 1.692937805 1.312652222 0.911263181 1.902981873 1.726276405 2.120749818 3.193523785 1.28635584 1 19.52816224 -5.878151401 6.911173349 1.995725353 1.293125082 0.195974098 0.579697558 0.316871237 17.93379676 0.178557055 0.203160085 1.32E-06 5.878151401 -0.702600271 HDS(ph)PEDVKRR ddPTM_HeLa_A486_30min_R1 4 HDSPEDVKRR 10 2 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 1 0 HDS(1)PEDVKRR;HDS(1)PEDVKRR;HDS(1)PEDVKRR;HDS(1)PEDVKRR ;;; 195.77 5.04E-11 1718850000 1113990 735979 570592 655680 1369950 852360 1480670 1547000 605732 1416220 TRUE FALSE FALSE 1035905.054 677657.3437 791540.5034 1526456.176 1198118.097 747204.4894 1110190.705 1194781.871 658237.3375 1061589.294 0.97580586 0.638342293 0.745618393 1.437897109 1.128607931 0.703854583 1.045781746 1.12546526 0.62004896 1 20.0177943 HDSDT(ph)SPPRR ddPTM_HeLa_A486_30min_R1 1 HDSDTSPPRR 10 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 0 HDS(0.007)DT(0.497)S(0.497)PPRR 58.098 0.029149 177950000 88696 82892 103900 22240 83467 104610 78678 67488 108300 68177 TRUE FALSE FALSE 82478.86843 76323.33603 144132.8625 51775.84395 72997.79056 91704.2818 58991.93223 52122.45565 117687.5312 51105.03544 1.613908839 1.493460192 2.820326046 1.013126075 1.428387436 1.794427516 1.154327195 1.019908414 2.302855877 1 15.64117783 -5.328042974 24.9999106 1.39733978 1.927702265 0.218697239 0.506895044 300.2267127 112690.3222 0.139822266 0.207389965 4.70E-06 5.328042974 0.530362484 HDSIPAADTFEDLS(ph)DVEGGGSEPTQR ddPTM_HeLa_A485_30min_R1 3 HDSIPAADTFEDLSDVEGGGSEPTQR 26 0 O95671;O95671-2;O95671-3 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 HDSIPAADTFEDLS(1)DVEGGGSEPTQR;HDSIPAADTFEDLS(1)DVEGGGSEPTQR;HDSIPAADTFEDLS(1)DVEGGGSEPTQR ;; 237.35 1.78E-49 782350000 128094 256894 353140 68016 425130 140697 224535 177828 226254 128922 TRUE FALSE FALSE 156588.0684 286935.5186 483781.1814 71731.54185 382802.5645 148063.6774 176561.263 134215.4042 271661.1025 96784.11803 1.617910785 2.964696321 4.99855959 0.741149925 3.95522088 1.529834444 1.824279299 1.386750294 2.806876872 1 16.5624827 -6.298406355 24.86527603 1.74089055 2.86316816 0.193310263 1.169554259 949.5247227 638680.5356 0.399878638 0.35266886 5.03E-07 6.298406355 1.12227761 HDSIPAADTFEDLS(ph)DVEGGGSEPTQR ddPTM_HeLa_A486_30min_R1 2 HDSIPAADTFEDLSDVEGGGSEPTQR 26 0 O95671;O95671-2;O95671-3 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 HDSIPAADT(0.004)FEDLS(0.996)DVEGGGSEPTQR;HDSIPAADTFEDLS(1)DVEGGGSEPTQR ; 229.7 9.54E-39 476330000 121236 165165 223082 16074.9 241556 87895 111085 95372 184879 37091 TRUE FALSE FALSE 112737.9825 152076.7239 309465.3247 37423.17958 211257.7941 77051.40855 83290.35806 73657.87756 200904.4606 27803.17218 4.054860422 5.469761612 11.13057614 1.34600395 7.598334201 2.771317174 2.995714213 2.649261641 7.225954625 1 14.76296187 -6.276921527 24.31964441 3.410732315 5.930275119 0.180442584 2.758601687 1063.725722 1670914.221 0.947150043 0.838537086 5.29E-07 6.276921527 2.519542804 HDT(ph)PDPS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 HDTPDPSPLR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDT(1)PDPS(1)PLR;HDT(1)PDPS(1)PLR ; 119.39 0.00077695 574920000 2144600 2298600 1581190 1491140 2594300 2397600 3398700 3002100 2141400 3888000 TRUE FALSE FALSE 1994274.615 2116450.565 2193469.114 3471449.278 2268898.703 2101808.489 2548309.312 2318587.365 2327018.276 2914419.493 0.684278505 0.726199701 0.752626421 1.191128898 0.778507936 0.72117569 0.874379724 0.795557184 0.798450011 1 21.47477712 -13.99999998 0.021040656 2.030328622 8.98E-13 0.135771001 0.136598668 7723.861373 12.26895385 810.5506698 429.2337148 1.00E-14 13.99999998 -2.030328622 HDT(ph)PDS(ph)SPRR ddPTM_HeLa_A486_30min_R1 1 HDTPDSSPRR 10 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDT(1)PDS(0.91)S(0.09)PRR 88.552 0.002672 257450000 226910 173650 166160 117790 191940 280730 309310 236250 260890 343680 TRUE FALSE FALSE 211004.7808 159889.3416 230501.6019 274221.0728 167865.0954 246096.3869 231917.3665 182461.0323 283504.1553 257620.291 0.819053421 0.62063955 0.894733878 1.064438953 0.651598889 0.955267871 0.900229425 0.708255672 1.100472925 1 17.9748867 -1 0.10375418 1.070175159 0.14411078 0.175248877 0.145088125 230.8920485 1.691919534 1.635203916 30.49171081 0.1 1 -0.926064379 HEAPSS(ph)PISGQPCGDDQNAS(ph)PSK ddPTM_HeLa_A485_30min_R1 1 HEAPSSPISGQPCGDDQNASPSK 23 0 O75376-2;O75376;A0A088AWL3;O75376-3;E7EVU5;E7EW50;J3KS51 O75376-2 NCOR1 Nuclear receptor corepressor 1 2 0 HEAPS(0.154)S(0.84)PIS(0.005)GQPCGDDQNAS(0.965)PS(0.035)K 130.45 1.40E-11 0 98366 66926 61854 187350 114890 64937 117090 83997 77587 221310 TRUE FALSE FALSE 120247.1773 74752.41352 84736.36856 197584.4561 103451.1482 68337.00091 92072.76496 63396.60405 93157.99923 166141.4899 0.723763687 0.449932245 0.510025332 1.189254148 0.622668957 0.411318094 0.554182854 0.381582012 0.560714842 1 17.34205287 -10.13017972 5.081944819 1.000015273 0.597920299 0.230115019 0.219242015 4.01E-05 6.87E-06 0.224531775 0.054454888 7.41E-11 10.13017972 -0.402094975 HEAPSS(ph)PISGQPCGDDQNASPSK ddPTM_HeLa_A485_30min_R1 1 HEAPSSPISGQPCGDDQNASPSK 23 0 O75376-2;O75376;A0A088AWL3;O75376-3;E7EVU5;E7EW50;J3KS51 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 HEAPS(0.1)S(0.899)PIS(0.001)GQPCGDDQNASPSK 189.34 3.53E-21 760540000 318570 312340 258620 371350 411970 282430 444960 327340 311980 494060 TRUE FALSE FALSE 389434.7974 348865.446 354294.3001 391635.9102 370952.8203 297217.5981 349890.661 247059.3518 374591.5243 370899.9345 1.049972678 0.940591824 0.955228802 1.055907197 1.000142588 0.801341738 0.943355953 0.666107833 1.009953061 1 18.50067049 -6.242352765 23.98804113 0.866983725 0.997625416 0.244215108 0.099909918 610.2287913 766934.6525 0.031087693 0.031032704 5.72E-07 6.242352765 0.130641691 HEAPSS(ph)PISGQPCGDDQNASPSK ddPTM_HeLa_A486_30min_R1 3 HEAPSSPISGQPCGDDQNASPSK 23 0 O75376-2;O75376;A0A088AWL3;O75376-3;E7EVU5;E7EW50;J3KS51 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 HEAPS(0.146)S(0.854)PISGQPCGDDQNASPSK;HEAPS(0.112)S(0.888)PISGQPCGDDQNASPSK;HEAPS(0.17)S(0.83)PISGQPCGDDQNASPSK ;; 225.68 2.37E-38 2192340000 1386340 1514560 855790 335115 1453420 1526570 1754070 1660460 1318130 1618700 TRUE FALSE FALSE 1289164.725 1394540.75 1187174.807 780164.6558 1271118.511 1338237.314 1315183.133 1282409.506 1432386.57 1213366.984 1.062468933 1.149314896 0.978413639 0.642975016 1.047596092 1.102912253 1.083912082 1.056901599 1.180505641 1 20.21058453 -5.98555874 24.99897288 1.086889895 0.957363615 0.178966511 0.128317715 448.3737822 776166.3314 0.043064989 0.048813102 1.03E-06 5.98555874 -0.12952628 HECQANGPEDLNR ddPTM_HeLa_A485_30min_R1 2 HECQANGPEDLNR 13 0 P60981;P60981-2 P60981 DSTN Destrin 0 0 ; ; 201.06 5.38E-15 30930000 14674.7 13745.6 14141.7 14814.3 15845.9 13800 17047.7 16446 13726.5 19484.9 FALSE FALSE TRUE 17939.03639 15353.02835 19373.30332 15623.5677 14268.22656 14522.54666 13405.31963 12412.59271 16481.28264 14627.67302 1.226376633 1.049587882 1.324428245 1.068082919 0.975426955 0.992813186 0.916435554 0.848569194 1.126719378 1 13.83641266 -5.541345593 4.196547714 0.968569873 1.187831607 0.540914143 0.09148223 0.154774358 6.370470946 0.026524455 0.036517539 2.88E-06 5.541345593 0.219261734 HECQANGPEDLNR ddPTM_HeLa_A486_30min_R1 1 HECQANGPEDLNR 13 0 P60981;P60981-2 P60981 DSTN Destrin 0 0 93.478 0.0095685 0 81563 121830 106560 40379 142040 106150 107560 110230 101480 107330 FALSE FALSE TRUE 75845.85489 112175.7471 147822.8858 94004.35264 124224.0187 93054.29225 80647.35035 85133.0353 110276.3681 80453.8694 0.942724762 1.394286539 1.837362042 1.168425501 1.544040326 1.156616741 1.002404868 1.058159613 1.37067824 1 16.29587419 -6.404368402 6.370999393 1.108350532 1.391377685 0.229775707 0.238282769 0.363112682 17.62291317 0.085390043 0.074944584 3.94E-07 6.404368402 0.283027152 HEDEQALLDQNSQT(ph)PPPSPFSVQAFNK ddPTM_HeLa_A485_30min_R1 3 HEDEQALLDQNSQTPPPSPFSVQAFNK 27 0 A0A499FJI4;O75592-2;O75592;A0A087WY34 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 HEDEQALLDQNS(0.157)QT(0.843)PPPSPFSVQAFNK;HEDEQALLDQNS(0.108)QT(0.892)PPPSPFSVQAFNK;HEDEQALLDQNS(0.022)QT(0.978)PPPSPFSVQAFNK ;; 284.09 3.05E-77 2577910000 551063 674250 488710 617000 688500 641480 836060 849810 504942 765570 TRUE FALSE FALSE 673645.0632 753097.6723 669504.1659 650705.1477 619950.5225 675066.9009 657428.951 641392.765 606279.2278 574727.4883 1.172112135 1.310356104 1.16490716 1.132197713 1.078686047 1.174586068 1.143896828 1.115994586 1.054898609 1 19.13251853 -1 0.081437759 0.875160931 1.850919608 0.608319674 0.049615124 130.5764894 0.775452635 1.373357383 14.31882224 0.1 1 0.975758677 HEDEQALLDQNSQT(ph)PPPSPFSVQAFNK ddPTM_HeLa_A486_30min_R1 3 HEDEQALLDQNSQTPPPSPFSVQAFNK 27 0 A0A499FJI4;O75592-2;O75592;A0A087WY34 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 HEDEQALLDQNSQT(1)PPPSPFSVQAFNK;HEDEQALLDQNS(0.005)QT(0.995)PPPSPFSVQAFNK;HEDEQALLDQNS(0.186)QT(0.811)PPPS(0.003)PFSVQAFNK ;; 277.33 6.89E-77 2218340000 1234190 1132760 751791 428350 1267480 1052510 1370830 1399520 901000 1380310 TRUE FALSE FALSE 1147679.654 1042995.972 1042904.609 997220.4476 1108500.84 922662.0173 1027833.835 1080879.847 979099.4055 1034671.392 1.109221405 1.008045627 1.007957326 0.963804021 1.071355455 0.891744011 0.993391567 1.04466003 0.946290207 1 19.98074121 -2.667544485 1.116537615 0.988322137 4.85950608 0.364140958 0.047153977 57.23006268 2.822814526 0.013815464 520.9555962 0.002150084 2.667544485 3.871183943 HEDLVPPAGS(ph)PELS(ph)PPQPLFRPR ddPTM_HeLa_A485_30min_R1 1 HEDLVPPAGSPELSPPQPLFRPR 23 1 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 2 0 HEDLVPPAGS(1)PELS(1)PPQPLFRPR 71.974 0.019415 44889000 46234 65190 63854 62959 83191 55820 80794 82692 59624 79498 TRUE FALSE FALSE 56518.59379 72813.40342 87476.25179 66398.29075 74908.21194 58742.64889 63531.70187 62411.65734 71589.9899 59680.61165 0.94701767 1.220051226 1.465739867 1.112560493 1.255151545 0.984283627 1.06452833 1.04576102 1.19955188 1 15.8649747 -6.253411431 24.89994086 1.062041494 1.211106336 0.219215586 0.13243418 911.7965704 2828082.372 0.044845756 0.044088074 5.58E-07 6.253411431 0.149064841 HEEAPGHRPT(ph)TNPNASK ddPTM_HeLa_A486_30min_R1 1 HEEAPGHRPTTNPNASK 17 1 P21291;E9PP21;E9PS42;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 1 0 HEEAPGHRPT(0.5)T(0.5)NPNASK 66.335 0.012746 26336000 38236 36737 25440 14499 43946 40466 39304 47502 31702 38610 TRUE FALSE FALSE 35555.85385 33825.82633 35291.04931 33754.40474 38433.8829 35473.71635 29469.72348 36686.83156 34449.95489 28941.80469 1.228529258 1.168753182 1.219379706 1.166285417 1.327971193 1.225691235 1.018240701 1.267606908 1.190318132 1 14.82086726 -8.055654257 22.03880434 0.999999999 1.201613095 0.387583098 0.076088564 5228.980654 2070648.227 0.0738256 0.019061688 8.80E-09 8.055654257 0.201613096 HEEAPGHRPTTNPNASK ddPTM_HeLa_A485_30min_R1 4 HEEAPGHRPTTNPNASK 17 1 P21291;E9PP21;E9PS42;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 0 ;;; ;;; 164.41 2.32E-11 436386000 144290.1 150322.8 106912.9 174721.5 178528 132873.2 175326.9 160089.1 146866.9 228395.7 FALSE FALSE TRUE 176386.935 167901.7438 146464.4307 184266.0931 160753.1255 139830.2353 137866.8755 120826.9972 176341.7397 171460.8553 1.028730054 0.979242426 0.854214978 1.074683156 0.937550003 0.815522791 0.804072016 0.704691441 1.028466465 1 17.38751972 -6.097278951 5.0874774 0.848882399 0.978038857 0.198059727 0.103158121 0.316341084 12.86885146 0.033580811 0.033883835 7.99E-07 6.097278951 0.129156457 HEEAPGHRPTTNPNASK ddPTM_HeLa_A486_30min_R1 5 HEEAPGHRPTTNPNASK 17 1 P21291;E9PP21;E9PS42;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 0 ;;;; ;;;; 109.35 0.00046365 814623000 287166 305772 182766 106784 316754 320803 360290 322306 261925 337578 FALSE FALSE TRUE 267037.1463 281541.5131 253537.8898 248598.5486 277023.7597 281225.5875 270141.6312 248923.9597 284628.8699 253046.2715 1.055289788 1.112608818 1.0019428 0.982423282 1.094755351 1.111360329 1.067558236 0.983709257 1.124809578 1 17.94904169 -2.806486557 15.22265428 1.054381624 1.065945146 0 0.054112234 0 0 0.012393722 0 0.001561397 2.806486557 0.011563522 HEEAPGHRPTTNPNASK(ac)FAQK ddPTM_HeLa_A485_30min_R1 3 HEEAPGHRPTTNPNASKFAQK 21 2 P21291;E9PP21;E9PS42;E9PND2 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 1 ;; HEEAPGHRPTTNPNASK(1)FAQK;HEEAPGHRPTTNPNASK(1)FAQK;HEEAPGHRPTTNPNASK(1)FAQK 60.561 0.012386 192742000 91163.5 74426.2 69063 133681 125068 76464.6 125789 125046 115574 227623 FALSE TRUE FALSE 111442.5061 83129.69667 94612.27765 140983.6545 112615.7908 80468.16822 98913.15255 94378.27244 138768.6417 170880.7752 0.652165265 0.48647776 0.553674207 0.825041052 0.659031366 0.470902406 0.57884307 0.5523048 0.812078723 1 17.38263057 -7.97450951 3.516289118 0.998526916 0.597475725 0.646952415 0.096061812 0.130930454 3.795169476 0.098689 0.026157201 1.06E-08 7.97450951 -0.401051191 HEEEEWT(ph)DDDLVESL ddPTM_HeLa_A485_30min_R1 4 HEEEEWTDDDLVESL 15 0 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 0 HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL ;;; 241.52 1.55E-40 2653380000 1784520 2355980 2289160 2467720 3064040 1821700 2948670 2642880 2113170 3169790 TRUE FALSE FALSE 2181480.317 2631491.367 3136015.544 2602525.295 2758973.419 1917081.395 2318662.566 1994709.536 2537263.836 2379619.689 0.916734858 1.10584535 1.317864178 1.093672786 1.159417798 0.805625119 0.97438367 0.838247198 1.066247623 1 21.18229959 -6.24397621 24.87210427 0.929133853 1.127665968 0.381743901 0.115191882 777.8551024 1107869.198 0.0380808 0.037996006 5.70E-07 6.24397621 0.198532116 HEEEEWT(ph)DDDLVESL ddPTM_HeLa_A486_30min_R1 4 HEEEEWTDDDLVESL 15 0 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 0 HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL;HEEEEWT(1)DDDLVESL ;;; 255.16 1.54E-49 2235700000 2073540 2763580 2192680 1102640 2973660 2449630 2912320 2875200 2424970 2672590 TRUE FALSE FALSE 1928195.554 2544583.856 3041744.418 2567001.644 2600675.835 2147419.557 2183626.733 2220579.725 2635168.352 2003356.068 0.962482698 1.270160555 1.518324409 1.281350672 1.298159561 1.071911075 1.089984335 1.108429879 1.315376929 1 20.93398743 -6.253874306 24.43178082 1.122220054 1.281181637 0.201926331 0.146363616 712.2141668 2300132.272 0.050437192 0.049435212 5.57E-07 6.253874306 0.158961583 HEEQS(ph)NEDIPIAEQSSK ddPTM_HeLa_A485_30min_R1 1 HEEQSNEDIPIAEQSSK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 HEEQS(1)NEDIPIAEQSSK 71.594 0.0018436 0 58448 61622 34262 106740 59323 58334 78848 76449 43206 131560 TRUE FALSE FALSE 71449.55596 68828.15686 46936.93956 112570.9359 53416.59382 61388.27804 62001.48067 57699.76288 51877.04789 98764.51318 0.723433485 0.696891572 0.475240935 1.139791331 0.540848045 0.621562098 0.627770833 0.584215535 0.525259997 1 16.59170514 -10.10080832 4.568627095 1.000024817 0.661510642 0.25160073 0.176172519 52751937.84 58314810 11459.2651 0.041939894 7.93E-11 10.10080832 -0.338514174 HEEQS(ph)NEDIPIAEQSSK ddPTM_HeLa_A486_30min_R1 1 HEEQSNEDIPIAEQSSK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 HEEQS(1)NEDIPIAEQSSK 109.85 0.00012012 433410000 135160 152470 81678 75038 111610 181150 197340 156820 132900 188560 TRUE FALSE FALSE 125685.982 140387.7219 113305.909 174692.2562 97610.83308 158801.5548 147963.4448 121115.5094 144419.879 141343.3487 0.889224595 0.993238969 0.801635946 1.235942532 0.690593749 1.123516291 1.046836983 0.856888637 1.021766361 1 17.10884447 HEERQDEHGYISR ddPTM_HeLa_A485_30min_R1 3 HEERQDEHGYISR 13 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ;; ;; 134.61 1.16E-05 1053730000 66718 298358 217104 44541.4 440540 388172 516370 1480120 174739 111068 FALSE FALSE TRUE 81559.18893 333248.3727 297419.8041 46974.5839 396678.2908 408496.0857 406043.3311 1117118.249 209807.5145 83380.79166 0.978153209 3.99670435 3.567006239 0.563374165 4.757430133 4.899162956 4.869746654 13.39778895 2.516257166 1 16.34742745 -2.89506911 19.66447174 4.352434684 3.093087642 0 3.516326802 0 0 0.82593743 0 0.0012733 2.89506911 -1.259347041 HEERQDEHGYISR ddPTM_HeLa_A486_30min_R1 2 HEERQDEHGYISR 13 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 84.566 0.0024257 133813000 58105 23981 59862 33160 206263 36567 86134 111415 20697.7 50598 FALSE FALSE TRUE 54032.13955 22080.65822 83042.16956 77198.15581 180391.5712 32055.73533 64582.36217 86048.23667 22491.7933 37927.93146 1.424600221 0.58217407 2.189472675 2.035390617 4.756166874 0.845174891 1.70276521 2.268730019 0.593013972 1 15.21097307 -4.770517282 24.78546789 2.027870468 1.003387106 0.092146703 1.118142288 335.8841702 917076.0672 0.294736185 0.628007281 1.70E-05 4.770517282 -1.024483362 HEGGRDPPASHAVPNT(ph)PHRSPPSDVR ddPTM_HeLa_A485_30min_R1 1 HEGGRDPPASHAVPNTPHRSPPSDVR 26 2 H7C0J3;I3L229 H7C0J3 CHD3 1 0 HEGGRDPPASHAVPNT(0.495)PHRS(0.495)PPS(0.01)DVR 85.337 0.003434 445870000 23876 47383 33933 23313 53634 37005 53133 75804 31139 36393 TRUE FALSE FALSE 29187.13383 52924.02967 46486.22877 24586.53016 48294.01064 38942.52458 41780.70049 57212.95014 37388.31168 27320.89486 1.06830812 1.937126508 1.701489977 0.899916722 1.767658449 1.425375149 1.529258126 2.094109671 1.368487814 1 14.73771712 -4.217619329 22.05659329 1.5496273 1.068300577 0.123651177 0.359179012 12967.65408 6526530.711 0.086753043 29.97882634 6.06E-05 4.217619329 -0.481326723 HEGGRDPPASHAVPNT(ph)PHRSPPSDVR ddPTM_HeLa_A486_30min_R1 3 HEGGRDPPASHAVPNTPHRSPPSDVR 26 2 H7C0J3;I3L229 H7C0J3 CHD3 1 0 HEGGRDPPASHAVPNT(0.922)PHRS(0.077)PPS(0.001)DVR;HEGGRDPPASHAVPNT(0.557)PHRS(0.44)PPS(0.003)DVR;HEGGRDPPASHAVPNT(0.886)PHRS(0.112)PPS(0.002)DVR ;; 114.76 0.00037182 713683000 460179 348224 393797 126233 623526 377365 529440 515223 363744 498647 TRUE FALSE FALSE 427922.8285 320629.462 546285.7446 293876.8035 545317.5549 330809.5431 396968.5122 397917.9701 395273.6228 373782.5456 1.144844331 0.857796775 1.461506834 0.786223988 1.458916585 0.885032078 1.06203063 1.064570764 1.057496203 1 18.51183968 HEIS(ph)PGHDGTWNDNQLQEMAQLR ddPTM_HeLa_A485_30min_R1 2 HEISPGHDGTWNDNQLQEMAQLR 23 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-2;C9J1B2 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 HEIS(0.5)PGHDGT(0.5)WNDNQLQEMAQLR;HEIS(0.5)PGHDGT(0.5)WNDNQLQEMAQLR ; 113.99 9.49E-05 112000000 48497 52460 58213 64100 71140 48867 68206 50352 52972 87091 TRUE FALSE FALSE 59284.99034 58594.74066 79748.41115 67601.62069 64057.05181 51425.60056 53633.23091 38003.09305 63602.99451 65380.81649 0.906764301 0.896206927 1.219752451 1.033967214 0.979753011 0.786554884 0.820320605 0.581257548 0.972808202 1 15.99657977 -6.183592088 4.114546726 0.804871005 1.018770217 0.283393252 0.136190749 0.265511898 8.514325301 0.046613401 0.0461345 6.55E-07 6.183592088 0.213899212 HEIS(ph)PGHDGTWNDNQLQEMAQLR ddPTM_HeLa_A486_30min_R1 1 HEISPGHDGTWNDNQLQEMAQLR 23 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-2;C9J1B2 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 HEIS(0.5)PGHDGT(0.5)WNDNQLQEMAQLR 78.413 0.0035306 146380000 51360 46530 38591 37714 69358 59177 91216 88120 42953 73916 TRUE FALSE FALSE 47759.92922 42842.79334 53534.4687 87800.09796 60658.4729 51876.34341 68392.79202 68056.99965 46676.20062 55406.95249 0.86198441 0.773238581 0.966204895 1.584640447 1.094780893 0.936278591 1.234372023 1.228311549 0.842424976 1 15.7577794 -5.005030995 24.57648175 1.146423604 0.830638916 0.30059507 0.192726447 208.0692347 1016446.242 0.051228165 0.102037829 9.88E-06 5.005030995 -0.315784688 HELQANCYEEVKDR ddPTM_HeLa_A485_30min_R1 8 HELQANCYEEVKDR 14 1 P23528;E9PP50;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 ;;;;;;; ;;;;;;; 260.12 3.58E-41 3669830000 3446563 2413329 2268729 5390540 3568566 2844142 4607340 3442876 2839351 7467980 FALSE FALSE TRUE 4213239.049 2695546.833 3108026.267 5685011.551 3213267.039 2993056.877 3622944.17 2598505.263 3409182.702 5606350.024 0.751511952 0.480802451 0.554376065 1.014030791 0.573147774 0.533869071 0.646221544 0.463493227 0.608093089 1 22.41863039 -10.29399994 4.907914215 1.000129597 0.621840553 0.353678491 0.15199945 0.000219935 3.16E-05 0.150139047 0.036401669 5.08E-11 10.29399994 -0.378289044 HELQANCYEEVKDR ddPTM_HeLa_A486_30min_R1 6 HELQANCYEEVKDR 14 1 P23528;E9PP50;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 ;;;;; ;;;;; 245.19 5.58E-35 4071132000 3032669 3490434 1863699 1845921 3504018 4251627 4896823 4355360 2947625 5031740 FALSE FALSE TRUE 2820094.564 3213839.298 2585373.164 4297397.376 3064511.389 3727104.488 3671586.092 3363739.605 3203127.508 3771759.553 0.747686729 0.852079581 0.685455456 1.139361435 0.812488534 0.988160681 0.973441186 0.891822386 0.849239583 1 21.84680628 -5.234755716 24.99885746 0.942893964 0.770774493 0.458690204 0.093621976 712.5570227 667565.3076 0.024177646 0.04186197 5.82E-06 5.234755716 -0.172119472 HELS(ph)PPQK ddPTM_HeLa_A485_30min_R1 3 HELSPPQK 8 0 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 HELS(1)PPQK;HELS(1)PPQK;HELS(1)PPQK ;; 99.568 0.0016902 623710000 823730 627390 531820 1253030 717570 587160 847900 569360 648000 1467910 TRUE FALSE FALSE 1006965.897 700757.8029 728562.3489 1321479.856 646126.2113 617902.7897 666739.2383 429723.5673 778047.6562 1101987.052 0.913772893 0.635903845 0.661135126 1.199179114 0.586328315 0.560716924 0.605033641 0.389953372 0.706040652 1 20.07167584 HELS(ph)PPQK ddPTM_HeLa_A486_30min_R1 1 HELSPPQK 8 0 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 HELS(1)PPQK 78.513 0.0075304 234530000 400990 452230 185660 124190 246640 449700 448030 354880 377040 538600 TRUE FALSE FALSE 372882.6717 416393.6478 257552.5241 289120.5962 215704.1114 394220.5862 335928.1552 274081.571 409722.1308 403731.0543 0.923591752 1.031363932 0.637930923 0.716121768 0.53427674 0.976443556 0.832059243 0.67887166 1.014839276 1 18.62303504 -7.779728616 24.93512492 1.007419965 0.7906725 0.254305558 0.148006685 398.3568713 543094.8547 0.148163631 0.03855602 1.66E-08 7.779728616 -0.216747465 HELS(ph)PPQKR ddPTM_HeLa_A485_30min_R1 8 HELSPPQKR 9 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR ;;;;;;; 143.97 8.94E-05 22872520000 2508110 2355220 1740380 3176840 2425580 2243640 3056180 2586680 2087870 3811300 TRUE FALSE FALSE 3066030.417 2630642.491 2384218.985 3350382.725 2184080.738 2361113.521 2403202.176 1952292.674 2506886.358 2861213.052 1.071584101 0.919415103 0.833289567 1.170965833 0.763340827 0.825214159 0.839924232 0.68233041 0.876162073 1 21.4481955 -5.802622081 24.99982063 0.815419129 0.981320076 0.334628553 0.113463463 166.9241303 101329.8532 0.033968694 0.038517279 1.58E-06 5.802622081 0.165900946 HELS(ph)PPQKR ddPTM_HeLa_A486_30min_R1 8 HELSPPQKR 9 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR;HELS(1)PPQKR ;;;;;;; 132.32 0.0001833 15287680000 2201780 2172970 1041523 715005 1547694 2082350 2222470 1994500 1653878 2768530 TRUE FALSE FALSE 2047446.592 2000775.943 1444828.599 1664567.774 1353567.787 1825450.829 1666384.499 1540395.89 1797237.477 2075272.068 0.98659189 0.96410296 0.696211654 0.802096169 0.652236306 0.879620006 0.802971584 0.742262142 0.866024992 1 20.98486906 -4.680429162 8.090865316 0.793144873 0.978703165 0.340121284 0.093690242 0.242378797 21.12110866 0.02237495 0.059542945 2.09E-05 4.680429162 0.185558293 HERPAGPGT(ph)PPPDSGPLAK ddPTM_HeLa_A486_30min_R1 2 HERPAGPGTPPPDSGPLAK 19 1 H0YME5;Q9P2K8-2;Q9P2K8 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 HERPAGPGT(1)PPPDSGPLAK;HERPAGPGT(0.999)PPPDS(0.001)GPLAK ; 145.33 2.67E-08 1229310000 819630 731470 399250 289108 665750 859760 973750 848670 699300 1033980 TRUE FALSE FALSE 762178.1696 673505.6532 553850.2923 673058.0347 582245.4271 753691.5526 730107.4507 655446.3673 759915.887 775064.6779 0.983373635 0.868967033 0.714585902 0.868389508 0.751221729 0.972424075 0.941995515 0.845666673 0.980454804 1 19.56395718 -6.279008545 24.90108691 0.93808034 0.83397532 0.329946051 0.078227461 1046.260988 1482879.405 0.027966357 0.024717956 5.26E-07 6.279008545 -0.104105019 HET(ph)SDHEAEEPDCIISEAPTSPLGHLTSEYDTDR ddPTM_HeLa_A486_30min_R1 1 HETSDHEAEEPDCIISEAPTSPLGHLTSEYDTDR 34 0 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein 1 0 HET(0.5)S(0.5)DHEAEEPDCIISEAPTSPLGHLTSEYDTDR 68.439 0.0022306 242100000 20386 47961 46127 3125.4 48580 31444 34450 34755 36491 10077 TRUE FALSE FALSE 18957.04667 44160.39569 63988.60972 7276.089149 42486.64341 27564.75898 25830.24563 26842.0452 39654.06926 7553.65361 2.509652633 5.846229913 8.471213141 0.963254277 5.624648098 3.649195529 3.419569782 3.553518149 5.249654182 1 12.88295891 -5.265392541 24.99961676 3.567768932 5.632751603 0.213039424 1.957585524 557.6805301 3526751.341 0.53281041 0.824571228 5.43E-06 5.265392541 2.064982671 HETS(ph)DHEAEEPDCIISEAPTS(ph)PLGHLTSEYDTDR ddPTM_HeLa_A485_30min_R1 1 HETSDHEAEEPDCIISEAPTSPLGHLTSEYDTDR 34 0 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein 2 0 HET(0.48)S(0.52)DHEAEEPDCIIS(0.009)EAPT(0.229)S(0.703)PLGHLT(0.016)S(0.017)EY(0.026)DT(0.001)DR 67.409 0.00058348 83265000 6237 12659 13487 11800 17202 5303.1 13158 10127 9816.7 14617 TRUE FALSE FALSE 7624.399133 14139.35993 18476.40254 12444.60412 15489.30848 5580.762116 10346.68581 7643.337371 11786.82165 10973.25091 0.694816805 1.288529721 1.683767436 1.134085444 1.411551473 0.50857874 0.942900686 0.69654266 1.074141268 1 13.42170338 -6.246496444 24.99371576 0.831620823 1.263590854 0.340529249 0.275951366 891.4541574 1491056.634 0.090850612 0.090498695 5.67E-07 6.246496444 0.431970031 HETWSGHVISS(ph) ddPTM_HeLa_A485_30min_R1 1 HETWSGHVISS 11 0 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 HETWSGHVIS(0.12)S(0.88) 97.472 0.0012783 65401000 73023 212970 246540 36081 237220 115750 165750 183800 170640 100690 TRUE FALSE FALSE 89266.71442 237874.9889 337745.4054 38052.01367 213601.5439 121810.491 130336.1584 138722.7618 204885.8828 75589.83606 1.180935415 3.146917645 4.468132529 0.503401193 2.825797157 1.611466533 1.724255075 1.835203898 2.710495134 1 16.20590464 -5.267628619 24.9997111 1.817857553 2.953487432 0.230913034 0.986640653 748.7903947 3024531.185 0.271308881 0.414086368 5.40E-06 5.267628619 1.135629879 HFAESETLDQLPLTNPEHFGT(ph)PVIAK ddPTM_HeLa_A485_30min_R1 1 HFAESETLDQLPLTNPEHFGTPVIAK 26 0 P29374;P29374-3;P29374-2;C9J1W3 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 HFAESETLDQLPLT(0.011)NPEHFGT(0.989)PVIAK 113.31 0.00060933 67990000 29768 30398 24729 33657 41144 31439 40767 41510 23156 37449 TRUE FALSE FALSE 36389.7889 33952.78167 33877.28616 35495.59669 37047.55889 33085.09743 32056.79741 31329.60741 27803.1968 28113.6535 1.294381355 1.207697238 1.205011869 1.262575022 1.317778171 1.176833791 1.140257257 1.114391177 0.988957085 1 14.77898333 -7.226194455 1.080709259 0.992219 1.250793296 0.854878208 0.040713429 0.197853739 0.41008525 0.036971467 0.014878015 5.94E-08 7.226194455 0.258574297 HFAESETLDQLPLTNPEHFGT(ph)PVIAK ddPTM_HeLa_A486_30min_R1 1 HFAESETLDQLPLTNPEHFGTPVIAK 26 0 P29374;P29374-3;P29374-2;C9J1W3 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 HFAESETLDQLPLT(0.117)NPEHFGT(0.883)PVIAK 83.602 0.01121 45426000 30450 36985 21275 9342.7 35233 34885 39622 40478 26573 33497 TRUE FALSE FALSE 28315.61224 34054.1739 29513.24976 21750.27775 30813.74861 30581.24338 29708.15652 31262.04303 28876.36904 25109.13317 1.127701703 1.356246497 1.17539899 0.866229734 1.227192846 1.21793306 1.183161375 1.245046685 1.150034485 1 14.6159246 -7.481226746 0.011158062 9.69E-06 2.293627916 0.074466931 0.124388205 2975.448736 33.64559522 3459.310572 3449.874434 3.30E-08 7.481226746 2.293618229 HFAS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 HFASPSK 7 0 A0A1X7SBT5;Q92664 A0A1X7SBT5 GTF3A Transcription factor IIIA 1 0 HFAS(0.999)PS(0.001)K;HFAS(0.965)PS(0.035)K ; 94.85 0.0030853 0 388530 345720 224830 136063 372990 434380 501500 439300 334950 505910 TRUE FALSE FALSE 361296.0534 318323.8881 311890.1972 316761.5402 326206.1162 380790.6121 376019.3957 339280.9799 363983.7357 379226.8431 0.952717509 0.83940231 0.822437026 0.835282486 0.860187305 1.004123571 0.99154214 0.89466499 0.959804777 1 18.53270156 -6.246196997 23.74426907 0.964788344 0.857066744 0.59610868 0.044260161 310.4621981 483631.1929 0.015168619 0.015105264 5.67E-07 6.246196997 -0.1077216 HFDPEFTEEPVPNSIGKS(ph)PDSVLVTASVK ddPTM_HeLa_A485_30min_R1 1 HFDPEFTEEPVPNSIGKSPDSVLVTASVK 29 1 E9PR89;O00141-4;O00141;O00141-3;O00141-5;O00141-2 E9PR89 SGK1 Serine/threonine-protein kinase Sgk1 1 0 HFDPEFTEEPVPNS(0.103)IGKS(0.605)PDS(0.292)VLVTASVK 171.73 1.59E-14 125730000 49100 43273 26853 67379 63841 70160 121670 152080 77273 153360 TRUE FALSE FALSE 60022.12561 48333.40092 36787.04215 71059.74416 57484.76588 73833.46911 95674.21055 114782.1415 92780.98231 115130.1744 0.521341394 0.419815232 0.319525636 0.617212165 0.499302344 0.641304241 0.831008995 0.996977049 0.805878935 1 16.81290647 -6.600867076 1.162922514 0.948117112 0.447412239 0.851064359 0.086315952 0.171756811 0.473165117 0.053022584 0.035011142 2.51E-07 6.600867076 -0.500704873 HFDPEFTEEPVPNSIGKS(ph)PDSVLVTASVK ddPTM_HeLa_A486_30min_R1 1 HFDPEFTEEPVPNSIGKSPDSVLVTASVK 29 1 E9PR89;O00141-4;O00141;O00141-3;O00141-5;O00141-2 E9PR89 SGK1 Serine/threonine-protein kinase Sgk1 1 0 HFDPEFTEEPVPNS(0.095)IGKS(0.432)PDS(0.432)VLVT(0.038)AS(0.001)VK 56.021 0.014786 112020000 33173 24384 15683 16019 34450 35690 45141 44499 24428 54883 TRUE FALSE FALSE 30847.74401 22451.72303 21755.87761 37293.04156 30128.95977 31286.93067 33846.24435 34367.54911 26545.43871 41139.93957 0.749824728 0.545740302 0.528826193 0.906492376 0.732353039 0.760500161 0.822710113 0.835381614 0.645247392 1 15.32825205 -14 0.040130722 2.249701792 1.54E-14 0.378319302 0.111931265 882.2917252 2.638522441 133.5048119 39.91724031 1.00E-14 14 -2.249701792 HFEASCGQLS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 HFEASCGQLSPAR 13 0 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 HFEASCGQLS(1)PAR;HFEASCGQLS(1)PAR;HFEASCGQLS(1)PAR ;; 177.07 5.42E-13 869090000 381300 534630 517210 381020 665570 487210 550880 598240 455200 569790 TRUE FALSE FALSE 466118.8695 597150.3278 708547.5019 401834.1578 599303.5138 512719.5622 433179.9877 451520.702 546554.4647 427751.8392 1.0896946 1.39602048 1.656445249 0.939409538 1.401054207 1.198637891 1.012689948 1.055566945 1.277737264 1 18.70641453 -6.302485331 1.221333745 1.08932761 1.323638921 0.183873131 0.195681043 0.784018783 2.394859465 0.100689694 0.087463148 4.98E-07 6.302485331 0.234311311 HFEASCGQLS(ph)PAR ddPTM_HeLa_A486_30min_R1 3 HFEASCGQLSPAR 13 0 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 HFEASCGQLS(1)PAR;HFEASCGQLS(1)PAR;HFEASCGQLS(1)PAR ;; 213.91 1.43E-22 1138750000 571481 679402 593702 156682 817640 615713 667813 684700 515811 578572 TRUE FALSE FALSE 531423.133 625563.7112 823599.3143 364763.6143 715083.967 539752.5902 500719.124 528808.7569 560521.9128 433693.8053 1.225341765 1.442408684 1.899034075 0.841062542 1.648822183 1.244547613 1.154545253 1.219313604 1.292436982 1 18.72631731 -7.391177577 0.307935127 0.984751148 1.483535839 0.164719798 0.264519606 2.681261931 0.891548003 0.473399881 0.452590559 4.06E-08 7.391177577 0.49878469 HFFHHADEDDEEEDDS(ph)PPER ddPTM_HeLa_A485_30min_R1 4 HFFHHADEDDEEEDDSPPER 20 0 A0A087WZV0;O43314;O43314-2;D6RFG4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER ;;; 173.65 5.52E-14 3652160000 367250 801393 684073 569456 846390 445381 828110 865680 678884 791660 TRUE FALSE FALSE 448943.4955 895108.9402 937140.0694 600563.9393 762120.4397 468700.4605 651177.5335 653370.6227 815129.7917 594313.7314 0.755398154 1.506121923 1.576844047 1.010516681 1.282353746 0.78864148 1.095679772 1.099369892 1.37154797 1 19.18086519 -5.316525012 24.99979478 1.092098872 1.302124128 0.10119994 0.25250234 616.515197 279794.9062 0.070868986 0.105115749 4.82E-06 5.316525012 0.210025256 HFFHHADEDDEEEDDS(ph)PPER ddPTM_HeLa_A486_30min_R1 5 HFFHHADEDDEEEDDSPPER 20 0 A0A087WZV0;O43314;O43314-2;D6RFG4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER ;;;; 232.39 1.89E-36 4515190000 881946 1227350 1253120 485118 1599730 894796 1414620 1459610 1173460 1456810 TRUE FALSE FALSE 820126.1398 1130090.316 1738361.624 1129379.221 1399076.947 784405.1671 1060667.114 1127288.666 1275176.458 1092015.294 0.751020745 1.034866748 1.591883954 1.034215571 1.281188052 0.71830969 0.971293277 1.032301171 1.167727654 1 20.05856163 -6.226308303 24.97647887 0.979530346 1.152249499 0.11179488 0.224838834 1396.245366 992662.7078 0.076637334 0.076634139 5.94E-07 6.226308303 0.172719153 HFFINICHR ddPTM_HeLa_A485_30min_R1 2 HFFINICHR 9 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 0 ; ; 148.05 7.10E-05 79385000 26839 31629 27299 31026 30759 22137 37021 34722 24170 49844 FALSE FALSE TRUE 32809.24296 35327.73641 37398.03611 32720.87182 27696.52596 23296.05909 29111.16092 26206.37506 29020.6973 37418.80811 0.876811545 0.944117095 0.999444878 0.874449868 0.740176595 0.622576193 0.777982047 0.700353014 0.775564449 1 15.19147599 -5.626773601 3.845235653 0.747720275 0.940347605 0.385152737 0.095508032 0.197002834 5.495953112 0.027699012 0.036568129 2.36E-06 5.626773601 0.19262733 HFFINICHR ddPTM_HeLa_A486_30min_R1 2 HFFINICHR 9 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 0 ; ; 150.28 5.27E-05 47993000 18457 19951.9 15892.4 6645.2 22408 14128.5 19499.7 18913.7 16421 24536 FALSE FALSE TRUE 17163.25961 18370.83878 22046.36289 15470.36143 19597.37969 12385.46932 14620.66881 14607.46339 17844.3855 18392.0259 0.93319027 0.998848027 1.198691379 0.841145044 1.06553676 0.673415174 0.794946076 0.794228079 0.970224031 1 14.16679278 -6.239353569 24.97783958 0.830475869 1.008384388 0.299033614 0.121946536 927.5222663 1048977.5 0.039554985 0.039523017 5.76E-07 6.239353569 0.177908519 HFFPKWLQVLCS(ph)WLS(ph)NS(ph)PNY(ph)EEITK ddPTM_HeLa_A486_30min_R1 1 HFFPKWLQVLCSWLSNSPNYEEITK 25 1 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 4 0 HFFPKWLQVLCS(0.992)WLS(0.953)NS(0.953)PNY(0.95)EEIT(0.151)K 45.527 0.017778 205690000 30559 33812 18077 158940 40209 72839 83898 77260 26130 198670 TRUE FALSE FALSE 28416.97191 31132.61398 25076.89852 370020.3524 35165.61229 63852.86475 62905.83302 59669.58457 28394.96944 148921.7389 0.190818158 0.209053522 0.168389778 2.48466312 0.236134849 0.428767924 0.422408666 0.400677463 0.190670413 1 17.18419484 HFIDVGAGVIDEDYR ddPTM_HeLa_A485_30min_R1 3 HFIDVGAGVIDEDYR 15 0 H0YNW5;A0A0C4DGL3;H0YMM5;H0YKC5;H0YMP1;P33316-2;H0YNJ9;P33316;H0YKI0 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 ;; ;; 157.68 4.34E-08 516042000 318286 434760 361860 319548 385480 390760 429920 432960 320049 402590 FALSE FALSE TRUE 389087.6226 485601.4001 495727.0723 337004.0981 347100.2577 411219.5894 338064.0799 326775.8811 384279.8986 302231.7221 1.287381814 1.606718834 1.640221843 1.115052039 1.1484574 1.360610284 1.118559222 1.081209738 1.271474404 1 18.20529557 -5.268176842 24.98176328 1.166455237 1.520968635 0.614908819 0.128490018 332.7882101 1233942.002 0.035797635 0.054456708 5.39E-06 5.268176842 0.354513398 HFIDVGAGVIDEDYR ddPTM_HeLa_A486_30min_R1 3 HFIDVGAGVIDEDYR 15 0 H0YNW5;A0A0C4DGL3;H0YMM5;H0YKC5;H0YMP1;P33316-2;H0YNJ9;P33316;H0YKI0 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 ;; ;; 134.9 3.84E-05 380932000 278551 297725 237925 106532 322812 280186 297135 282403 271233 342408 FALSE FALSE TRUE 259026.0133 274132.1867 330055.9319 248011.8798 282321.9089 245619.5 222788.6802 218106.0017 294743.6948 256666.8081 1.009191704 1.068046892 1.285931493 0.966279519 1.099954883 0.956958564 0.868007367 0.849763175 1.148351425 1 17.96953721 -6.276280915 8.166033236 0.948991902 1.089416176 0.228803356 0.109360048 0.268216079 117.7012946 0.038155907 0.034710498 5.29E-07 6.276280915 0.140424274 HFKDEDEDEDVAS(ph)PDGLGR ddPTM_HeLa_A485_30min_R1 2 HFKDEDEDEDVASPDGLGR 19 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR ; 248.76 1.96E-46 966500000 638380 587550 446900 898930 844290 643720 1094630 1079080 603590 1306990 TRUE FALSE FALSE 780385.4286 656258.8615 612226.9071 948036.2697 760229.5231 677424.1838 860753.3582 814433.9381 724724.9765 981181.4464 0.795352818 0.668845568 0.623969103 0.966219116 0.774810333 0.69041683 0.877262163 0.830054361 0.738624827 1 19.90416043 -14 0.142372746 1.77085021 0.697301845 0.342740888 0.095582845 162.5688868 1.406136728 35.62478769 0.577211871 1.00E-14 14 -1.073548365 HFKDEDEDEDVAS(ph)PDGLGR ddPTM_HeLa_A486_30min_R1 4 HFKDEDEDEDVASPDGLGR 19 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR ;;; 225.13 3.52E-35 1735030000 1272790 1360392 761658 718296 1327120 1521170 2071390 1856180 1074263 2122050 TRUE FALSE FALSE 1183573.994 1252589.583 1056592.376 1672229.389 1160660.235 1333503.512 1553106.313 1433568.334 1167380.982 1590674.868 0.744070343 0.787457958 0.664241573 1.05127039 0.729665287 0.838325631 0.976382003 0.901232781 0.733890379 1 20.60120755 -1 0.12664447 0.994224885 0.164755484 0.216027276 0.111578764 141.163884 1.218865982 0.647053092 20.82063349 0.1 1 -0.829469401 HFLPLDFSTQVNSSLTS(ph)PTGR ddPTM_HeLa_A485_30min_R1 2 HFLPLDFSTQVNSSLTSPTGR 21 0 P19793 P19793 RXRA Retinoic acid receptor RXR-alpha 1 0 HFLPLDFSTQVNSSLT(0.002)S(0.992)PT(0.006)GR;HFLPLDFSTQVNSSLT(0.009)S(0.988)PT(0.003)GR ; 183.25 2.72E-19 555940000 209983 265120 268240 196482 329780 197114 226460 227210 163740 202678 TRUE FALSE FALSE 256692.9939 296123.4778 367473.1384 207215.3141 296945.9453 207434.5842 178074.971 171486.3912 196601.1161 152154.1046 1.687059278 1.94620762 2.415137859 1.361877911 1.95161311 1.363319016 1.170359298 1.12705728 1.292118386 1 17.21517373 -6.313258727 1.179894413 1.121447733 1.941515439 0.637927536 0.258415367 0.300377219 0.860040082 0.134317679 0.115474201 4.86E-07 6.313258727 0.820067705 HFNYPST(ph)PPSER ddPTM_HeLa_A485_30min_R1 2 HFNYPSTPPSER 12 0 Q9BX63;Q9BX63-2 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 HFNYPS(0.06)T(0.94)PPSER;HFNYPS(0.204)T(0.789)PPS(0.007)ER ; 107.5 0.00064051 795640000 471294 686071 636613 481418 806480 631164 774410 852310 594132 643884 TRUE FALSE FALSE 576131.7244 766301.0354 872122.6404 507716.6463 726184.0195 664210.7711 608950.9772 643279.6361 713368.8427 483375.5686 1.19189252 1.585311888 1.80423401 1.05035645 1.502318418 1.374109107 1.259788489 1.330807095 1.475806576 1 18.88278503 -12.69451614 0.203835762 2.89E-12 1.470439937 0.253150909 0.202036015 110.57125 1.771402123 46.67877371 0.483335484 2.02E-13 12.69451614 1.470439937 HFNYPST(ph)PPSER ddPTM_HeLa_A486_30min_R1 3 HFNYPSTPPSER 12 0 Q9BX63;Q9BX63-2 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 HFNYPS(0.327)T(0.665)PPS(0.008)ER;HFNYPS(0.03)T(0.966)PPS(0.004)ER;HFNYPS(0.043)T(0.947)PPS(0.01)ER ;; 79.652 0.005637 442710000 413400 448740 377128 115185 517150 418710 498620 504540 362308 455980 TRUE FALSE FALSE 384422.7948 413180.2081 523162.0614 268156.5011 452284.2248 367053.8173 373860.0021 389667.256 393713.1492 341799.6401 1.124702164 1.208837458 1.530610335 0.784542959 1.323243713 1.073885909 1.0937987 1.140045835 1.151882866 1 18.38279135 -1.024927629 0.022365198 0.110647875 2.515380563 0.087694859 0.177056553 6118.897208 10.60076161 408.4344166 788.8867287 0.094421821 1.024927629 2.404732688 HFRHDT(ph)PDS(ph)SPR ddPTM_HeLa_A485_30min_R1 2 HFRHDTPDSSPR 12 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HFRHDT(1)PDS(0.585)S(0.415)PR;HFRHDT(1)PDS(0.552)S(0.448)PR ; 121.45 7.98E-05 1117360000 363317 673610 579540 394934 733070 564458 804500 968120 515300 556823 TRUE FALSE FALSE 444135.6132 752382.8299 793935.9627 416508.2444 660082.9768 594012.1481 632612.0028 730687.052 618715.9834 418017.2737 1.062481484 1.799884544 1.899289844 0.996390031 1.579080623 1.421022971 1.513363305 1.747982914 1.480120613 1 18.67320303 -8.051065018 22.1819854 0.999999997 1.515488161 0.225409751 0.277468728 5896.442292 2561336.213 0.263305796 0.067985264 8.89E-09 8.051065018 0.515488164 HFRHDT(ph)PDS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 HFRHDTPDSSPR 12 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HFRHDT(1)PDS(0.571)S(0.429)PR;HFRHDT(1)PDS(0.679)S(0.321)PR ; 130.29 2.54E-05 1826760000 953210 1034890 908760 358060 1355430 850350 1118650 1189870 801950 1085940 TRUE FALSE FALSE 886394.9014 952881.5474 1260656.209 833581.7754 1185419.331 745442.4627 838751.9381 918962.5757 871463.6717 814013.5557 1.088919091 1.170596657 1.548691911 1.024039182 1.456264852 0.915761731 1.030390627 1.128927853 1.070576363 1 19.63469329 -6.274532632 24.98409823 1.037268019 1.256047944 0.35134436 0.155080734 937.2066825 1788340.657 0.05312023 0.047125175 5.31E-07 6.274532632 0.218779925 HFRHDT(ph)PDS(ph)SPRR ddPTM_HeLa_A485_30min_R1 1 HFRHDTPDSSPRR 13 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HFRHDT(1)PDS(0.559)S(0.441)PRR 102.08 0.0033 159470000 55756 106670 89958 56802 126580 89501 128560 163630 80987 81593 TRUE FALSE FALSE 68158.72984 119144.1286 123237.2077 59904.94943 113977.2508 94187.13397 101092.1058 123499.4859 97240.34804 61253.36671 1.112734426 1.945103347 2.011925455 0.977986234 1.860750794 1.537664606 1.650392643 2.016207314 1.587510259 1 15.90250152 HFRHDT(ph)PDS(ph)SPRR ddPTM_HeLa_A486_30min_R1 2 HFRHDTPDSSPRR 13 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HFRHDT(1)PDS(0.552)S(0.448)PRR;HFRHDT(1)PDS(0.556)S(0.444)PRR ; 112.3 0.0014084 377970000 250706 211094 191303 97135 329990 209488 265601 288173 184396 313961 TRUE FALSE FALSE 233132.804 194366.1426 265380.6449 226135.1889 288599.5772 183643.5005 199144.8206 222562.2987 200379.5937 235343.1221 0.990608104 0.8258841 1.12763289 0.960874433 1.226292804 0.78032236 0.846189253 0.945692811 0.851435946 1 17.84440617 -6.299607179 24.99997194 0.878925222 1.017126274 0.280307769 0.11272547 780.087167 510956.009 0.039398764 0.034747026 5.02E-07 6.299607179 0.138201053 HFRHDT(ph)PDSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 HFRHDTPDSSPR 12 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HFRHDT(1)PDS(0.287)S(0.713)PR 125.41 3.65E-05 1044100000 329130 634240 542130 334040 711970 522210 720580 828750 502340 473320 TRUE FALSE FALSE 402343.833 708408.8508 742686.4469 352287.7594 641083.7669 549552.1081 566622.1964 625497.7631 603155.0303 355330.0348 1.132310229 1.993664429 2.090131354 0.99143817 1.804192452 1.546596275 1.594636369 1.760328995 1.697450176 1 18.43880011 -10.14858616 5.448172395 0.999985392 1.635683335 0.247304463 0.325649834 5.61E-05 8.77E-06 0.306205529 0.074264045 7.10E-11 10.14858616 0.635697943 HFRHDT(ph)PDSS(ph)PRR ddPTM_HeLa_A486_30min_R1 1 HFRHDTPDSSPRR 13 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HFRHDT(1)PDS(0.433)S(0.567)PRR 113.33 0.0012892 108450000 79653 77901 78726 35402 127430 70348 91751 96506 63239 89403 TRUE FALSE FALSE 74069.73603 71727.84105 109210.8156 82417.64512 111446.5412 61669.17901 68793.92936 74533.69051 68720.60744 67015.90688 1.105256043 1.070310683 1.629625273 1.229822127 1.662986392 0.920217033 1.02653135 1.112179093 1.025437253 1 16.03221595 -6.293150344 24.99725867 1.024487771 1.334653433 0.427977652 0.186404877 708.7836646 558720.8296 0.066756014 0.058878657 5.09E-07 6.293150344 0.310165662 HFS(ph)GLEEAVYR ddPTM_HeLa_A486_30min_R1 1 HFSGLEEAVYR 11 0 P50990-2;P50990;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 1 0 HFS(1)GLEEAVYR 85.42 0.001919 0 22930 22418 20505 7780.3 29424 23438 22621 24890 17365 18450 TRUE FALSE FALSE 21322.72541 20641.51604 28445.08514 18112.93159 25733.36755 20546.45786 16960.98654 19223.09034 18870.21218 13829.99991 1.541773359 1.492517438 2.056766835 1.309684144 1.860691809 1.485644106 1.226390936 1.389955927 1.364440514 1 13.75551353 -7.520949414 0.483309741 1.016961262 1.677979884 0.456558901 0.211901441 0.824857475 0.48932916 0.227718346 0.142102821 3.01E-08 7.520949414 0.661018622 HFS(ph)QSEETGNEVFGALNEEQPLPR ddPTM_HeLa_A485_30min_R1 3 HFSQSEETGNEVFGALNEEQPLPR 24 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 HFS(0.94)QS(0.047)EET(0.013)GNEVFGALNEEQPLPR;HFS(0.448)QS(0.162)EET(0.39)GNEVFGALNEEQPLPR;HFS(0.704)QS(0.225)EET(0.07)GNEVFGALNEEQPLPR ;; 235.63 7.23E-49 1196420000 421516 544655 538225 546270 654427 450368 584363 590674 558976 675084 TRUE FALSE FALSE 515280.78 608347.6644 737336.8249 576111.3469 589269.95 473948.5721 459509.0712 445810.2754 671157.356 506797.9828 1.016738025 1.200375071 1.454892975 1.136767245 1.162731443 0.935182436 0.906690805 0.879660714 1.324309446 1 18.95105126 -6.072596092 3.202804191 0.995942874 1.217073407 0.260991291 0.154166601 0.333918137 6.678541629 0.054192292 0.056165876 8.46E-07 6.072596092 0.221130533 HFS(ph)QSEETGNEVFGALNEEQPLPR ddPTM_HeLa_A486_30min_R1 1 HFSQSEETGNEVFGALNEEQPLPR 24 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 HFS(0.827)QS(0.141)EET(0.032)GNEVFGALNEEQPLPR 204.09 9.48E-29 888190000 149380 154880 122280 44231 189160 155700 175320 177020 126280 176600 TRUE FALSE FALSE 138909.2334 142606.7447 169630.0908 102972.0033 165433.789 136491.317 131453.0817 136716.4103 137226.0521 132378.2105 1.049336087 1.077267506 1.281404924 0.777862179 1.249705584 1.031070873 0.993011472 1.032771253 1.036621144 1 17.01430615 -6.498278811 24.65978185 1.01743318 1.086201987 0.067974236 0.127614161 1985.736231 1990569.761 0.043453733 0.038112301 3.17E-07 6.498278811 0.068768807 HFSQS(ph)EETGNEVFGALNEEQPLPR ddPTM_HeLa_A485_30min_R1 1 HFSQSEETGNEVFGALNEEQPLPR 24 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 HFS(0.289)QS(0.469)EET(0.242)GNEVFGALNEEQPLPR 170.36 2.32E-14 906510000 43740 42298 48751 61487 60752 51223 57237 60462 44683 74327 TRUE FALSE FALSE 53469.8121 47244.38316 66786.0236 64845.87912 54703.31757 53904.95707 45007.84737 45633.5997 53650.46824 55798.64679 0.958263599 0.846694067 1.19691117 1.162140712 0.980369968 0.966062085 0.806611808 0.817826279 0.961501243 1 15.76794251 -6.381665088 2.695564731 0.882769339 1.037494687 0.239365939 0.108474209 0.394719614 5.573400733 0.045572736 0.039142349 4.15E-07 6.381665088 0.154725348 HFSQS(ph)EETGNEVFGALNEEQPLPR ddPTM_HeLa_A486_30min_R1 2 HFSQSEETGNEVFGALNEEQPLPR 24 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 HFS(0.354)QS(0.548)EET(0.098)GNEVFGALNEEQPLPR;HFS(0.443)QS(0.521)EET(0.036)GNEVFGALNEEQPLPR ; 193.4 3.53E-21 637400000 212912 218860 177387 73594 244997 212846 262190 259907 223833 243520 TRUE FALSE FALSE 197987.9683 201516.7365 246075.997 171330.5512 214267.1918 186587.2246 196587.2888 200731.8498 243235.0247 182541.007 1.08462187 1.103953243 1.348058724 0.938586645 1.173803056 1.022166075 1.076948638 1.09965346 1.33249525 1 17.47786107 -1.442576995 15.09247045 1.119562066 0.057691875 0 0.126768777 0 0 0.027667988 0 0.036093002 1.442576995 -1.06187019 HFSQSEET(ph)GNEVFGALNEEQPLPR ddPTM_HeLa_A486_30min_R1 1 HFSQSEETGNEVFGALNEEQPLPR 24 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 HFS(0.165)QS(0.167)EET(0.668)GNEVFGALNEEQPLPR 185.02 2.06E-20 849390000 397950 415510 295070 147680 454480 390030 479460 389530 352210 422140 TRUE FALSE FALSE 370055.76 382583.4743 409329.0062 343806.5033 397474.8805 341912.0641 359494.0368 300842.5224 382739.8464 316433.3963 1.169458611 1.209048978 1.293570815 1.086505114 1.256109138 1.080518264 1.136081213 0.950729366 1.209543148 1 18.27154234 -6.281042247 22.41518666 1.076089094 1.20184459 0.371889203 0.082882786 235.2054869 268947.2574 0.027541252 0.024341323 5.24E-07 6.281042247 0.125755497 HFSTESVPDEEGRQS(ph)PAMRPR ddPTM_HeLa_A485_30min_R1 1 HFSTESVPDEEGRQSPAMRPR 21 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;V9GXZ1 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 HFSTESVPDEEGRQS(1)PAMRPR 84.68 0.00079312 408300000 71037 178540 175030 24612 204890 101120 119170 130970 119340 65450 TRUE FALSE FALSE 86838.93558 199418.6999 239780.8806 25956.49124 184490.4322 106414.4868 93708.35597 98849.40215 143290.4433 49134.51952 1.767371217 4.058627252 4.880090066 0.528274042 3.754802815 2.165778517 1.907179655 2.011811718 2.916288686 1 15.58444933 -5.252635713 24.99771981 2.153832443 3.617689143 0.279172201 1.11405237 873.250069 2479559.488 0.294823127 0.50097156 5.59E-06 5.252635713 1.4638567 HFSTESVPDEEGRQS(ph)PAMRPR ddPTM_HeLa_A486_30min_R1 1 HFSTESVPDEEGRQSPAMRPR 21 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;V9GXZ1 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 HFSTESVPDEEGRQS(1)PAMRPR 90.545 0.00048847 377940000 118560 131220 158600 23044 166240 66545 86475 81604 116200 26112 TRUE FALSE FALSE 110249.5562 120821.6493 220014.1675 53647.59658 145388.6291 58335.35448 64838.04036 63024.5506 126272.3096 19573.38524 5.632625879 6.172751817 11.24047602 2.740844055 7.427873477 2.980340588 3.312561397 3.2199106 6.451224866 1 14.25660567 -5.915969454 1.312402595 3.555447299 7.16588024 0.299480104 2.366060167 0.557416407 2.006142467 0.963219837 1.177909781 1.21E-06 5.915969454 3.610432941 HFSVEGQLEFR ddPTM_HeLa_A485_30min_R1 2 HFSVEGQLEFR 11 0 P08238;Q58FF7;P07900;P07900-2;Q14568;Q58FG1 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P;HSP90AA4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4 0 0 ; ; 168.05 2.23E-06 57597000 48887 100968 122429 30829 139933 53718 84842 87190 83402 66501 FALSE FALSE TRUE 59761.74449 112775.3293 167720.5818 32513.11021 126000.7792 56530.59142 66714.8136 65806.51579 100140.0164 49923.52456 1.197065813 2.258961688 3.359550097 0.651258309 2.523875874 1.132343758 1.336340216 1.318146432 2.005868321 1 15.60743217 -5.273738527 24.99175779 1.467258602 2.270569545 0.23841268 0.691425648 1108.484331 2252428.061 0.190673203 0.285112968 5.32E-06 5.273738527 0.803310943 HFSVEGQLEFR ddPTM_HeLa_A486_30min_R1 1 HFSVEGQLEFR 11 0 P08238;Q58FF7;P07900;P07900-2;Q14568;Q58FG1 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA2P;HSP90AA4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4 0 0 121.02 0.00081771 14038000 27427 23279 23126 8600.6 31041 19057 25415 23098 23522 21273 FALSE FALSE TRUE 25504.50893 21434.28726 32081.00654 20022.63145 27147.54833 16705.9411 19055.89819 17839.08963 25560.9059 15946.10234 1.59941962 1.344170933 2.011840001 1.255644234 1.702456673 1.047650438 1.195019183 1.118711598 1.602956344 1 13.96091621 -6.259076669 24.99696836 1.200421465 1.575124979 0.389273014 0.243962937 231.4262499 2448446.027 0.078912343 0.075367902 5.51E-07 6.259076669 0.374703514 HFVALSTNTTK ddPTM_HeLa_A485_30min_R1 2 HFVALSTNTTK 11 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 123.62 0.00073849 435550000 372760 322020 347810 559320 571910 354260 554570 478860 370530 808420 FALSE FALSE TRUE 455679.176 359677.4378 476479.3926 589874.2353 514968.6323 372808.5058 436081.5891 361418.8342 444891.9723 606895.7719 0.750835971 0.592651085 0.785109099 0.971953114 0.84852895 0.614287532 0.718544451 0.595520435 0.733061578 1 19.21108924 -6.246899727 24.46353518 0.70614417 0.788719323 0.025568478 0.135995433 1782.775884 2999591.992 0.046139947 0.045922405 5.66E-07 6.246899727 0.082575153 HFVALSTNTTK ddPTM_HeLa_A486_30min_R1 2 HFVALSTNTTK 11 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 110.18 0.0016261 561510000 417060 685050 486540 258410 714410 760220 902390 830440 587080 643400 FALSE FALSE TRUE 387826.2477 630764.1431 674941.318 601591.5393 624802.0362 666431.7858 676602.4775 641366.9404 637968.5671 482288.4522 0.804137536 1.307856616 1.399455689 1.247368741 1.295494498 1.381811617 1.402900016 1.329840964 1.322794614 1 18.87953674 -4.261863704 7.087937317 1.316696433 0.79700925 0.636031637 0.111483478 0.059623313 24.0975396 0.025566798 0.149408757 5.47E-05 4.261863704 -0.519687184 HFVGMLPEKDCR ddPTM_HeLa_A485_30min_R1 3 HFVGMLPEKDCR 12 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 0 ;; ;; 100.38 0.0035543 1175690000 940980 1039430 918470 1047680 1614940 1203250 1686210 1788940 1025830 1466410 FALSE FALSE TRUE 1150297.755 1160982.297 1258250.274 1104912.106 1454150.903 1266250.309 1325937.458 1350199.66 1231704.672 1100860.974 1.044907378 1.054613002 1.142969279 1.003679966 1.320921476 1.15023635 1.204454958 1.226494255 1.118855787 1 20.07020085 -5.734207963 24.99835328 1.182203842 1.066863672 0.279803862 0.083874285 261.7431628 240278.2087 0.023267046 0.030029971 1.84E-06 5.734207963 -0.11534017 HFVGMLPEKDCR ddPTM_HeLa_A486_30min_R1 2 HFVGMLPEKDCR 12 1 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 0 ; ; 68.536 0.017618 1033100000 1061600 1152500 846070 512500 1521350 1276270 1497710 1601960 960680 1350460 FALSE FALSE TRUE 987187.3221 1061171.703 1173690.963 1193125.9 1330528.097 1118816.784 1122967.117 1237228.679 1043952.516 1012296.026 0.975196283 1.048282 1.159434525 1.178633393 1.314366611 1.105226885 1.109326806 1.22220047 1.031271969 1 19.94919981 -7.917946543 6.951036829 1.000515973 1.141539328 0.243870213 0.087656546 0.292288632 18.88971227 0.089964408 0.023304146 1.21E-08 7.917946543 0.141023355 HFYWYLTNEGIQYLR ddPTM_HeLa_A485_30min_R1 1 HFYWYLTNEGIQYLR 15 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435;A0A2R8Y6L3 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 284.04 1.51E-53 92779000 41053 37394 47429 43497 67222 44600 73275 56375 35256 71387 FALSE FALSE TRUE 50185.09822 41766.90302 64974.96079 45873.13097 60529.14165 46935.18704 57619.19765 42548.94286 42331.55581 53591.53468 0.936437042 0.779356353 1.2124109 0.855977185 1.129453411 0.875794793 1.075154835 0.793948953 0.789892584 1 15.70971751 -7.274003274 24.83801465 0.843940573 0.97872101 0.136395708 0.135498953 1283.793363 2537962.046 0.069308808 0.033655742 5.32E-08 7.274003274 0.134780436 HFYWYLTNEGIQYLR ddPTM_HeLa_A486_30min_R1 2 HFYWYLTNEGIQYLR 15 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435;A0A2R8Y6L3 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ; ; 259.1 4.26E-41 189511000 81184 137251 168511 64465 216666 171301 229040 189109 186972 142448 FALSE FALSE TRUE 75493.42083 126374.7309 233762.9721 150077.7779 189489.7299 150167.6243 171731.7695 146053.0089 203178.8835 106778.0936 0.707012256 1.183526757 2.189240922 1.405510932 1.774612409 1.406352363 1.608305259 1.367818098 1.9028143 1 16.70425617 -4.525396417 24.99704436 1.59664436 0.826140667 0.434201047 0.311769126 53.07359679 526955.6325 0.073335345 0.196630907 2.98E-05 4.525396417 -0.770503693 HGAPAAPS(ph)PPPR ddPTM_HeLa_A485_30min_R1 1 HGAPAAPSPPPR 12 0 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 HGAPAAPS(1)PPPR 57.328 0.026353 463280000 196300 218430 225260 223020 261890 202170 242210 204050 216450 349000 TRUE FALSE FALSE 239966.2578 243973.4884 308593.0479 235203.0179 235815.312 212755.3086 190459.8548 154006.4176 259889.5296 262000.7229 0.91589922 0.931193951 1.177832811 0.897718965 0.90005596 0.812040922 0.726944005 0.587809132 0.991942033 1 17.99921127 -5.899902654 1.913048526 0.792902417 0.998513792 0.225672708 0.133939082 0.416124528 3.115493312 0.048059071 0.056756648 1.26E-06 5.899902654 0.205611374 HGAPAAPS(ph)PPPR ddPTM_HeLa_A486_30min_R1 2 HGAPAAPSPPPR 12 0 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 HGAPAAPS(1)PPPR;HGAPAAPS(1)PPPR ; 69.045 0.009401 971380000 476370 545340 435910 187711 621820 522250 564780 531260 510880 551990 TRUE FALSE FALSE 442978.923 502125.2723 604706.0261 437000.6944 543825.5374 457820.1048 423466.0704 410303.6953 555163.4897 413768.1111 1.070597059 1.213542704 1.461461166 1.056148801 1.314324431 1.106465415 1.02343815 0.991627156 1.341726138 1 18.65846294 -6.407962458 7.043257877 1.085323419 1.226269575 0.17447741 0.142153516 0.449620265 24.73572177 0.049561322 0.043561185 3.91E-07 6.407962458 0.140946156 HGAPAAPS(ph)PPPRGSR ddPTM_HeLa_A485_30min_R1 2 HGAPAAPSPPPRGSR 15 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 HGAPAAPS(0.999)PPPRGS(0.001)R;HGAPAAPS(0.994)PPPRGS(0.006)R ; 76.526 0.0031259 106647000 63213 159265 96767 49399 113391 163941 173098 303100 75068 65571 TRUE FALSE FALSE 77274.51377 177889.6563 132565.1401 52097.54229 102101.3939 172524.6973 136114.1982 228764.2498 90133.45904 49225.35644 1.569811157 3.613780969 2.693025499 1.05834769 2.074162612 3.504793255 2.765123669 4.647284779 1.831037204 1 15.58711403 -6.242486025 24.2712059 2.978570372 2.244029845 0.037492057 1.10931215 1455.211613 1863508.683 0.359800988 0.359168531 5.72E-07 6.242486025 -0.734540527 HGAPAAPS(ph)PPPRGSR ddPTM_HeLa_A486_30min_R1 1 HGAPAAPSPPPRGSR 15 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 HGAPAAPS(0.991)PPPRGS(0.009)R 67.645 0.0054165 23816000 51262 32349 28026 28741 47880 51333 35567 38238 21568 59335 TRUE FALSE FALSE 47668.79852 29785.54743 38878.41776 66910.50049 41874.44394 45000.05638 26667.76041 29532.04213 23437.53161 44477.12979 1.071759773 0.669682319 0.874121553 1.504379909 0.941482603 1.011757202 0.599583663 0.663982642 0.526956926 1 15.44077607 -6.754398111 24.94143456 0.669629349 1.009509893 0.309943634 0.228397775 191.9473107 679914.0308 0.091569919 0.069367249 1.76E-07 6.754398111 0.339880545 HGAPS(ph)PSHPISAPQAAAAAALR ddPTM_HeLa_A485_30min_R1 2 HGAPSPSHPISAPQAAAAAALR 22 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 HGAPS(0.333)PS(0.333)HPIS(0.333)APQAAAAAALR;HGAPS(0.469)PS(0.469)HPIS(0.062)APQAAAAAALR ; 134.06 8.17E-07 263026000 240294 248728 238499 203675 353290 236467 282137 277283 302665 291140 TRUE FALSE FALSE 293746.5713 277814.576 326729.7049 214801.2495 318115.2071 248848.0465 221856.1251 209278.9095 363407.0893 218564.156 1.34398328 1.271089373 1.494891527 0.982783515 1.45547748 1.138558357 1.015061798 0.957517066 1.662702137 1 17.7376973 -5.464644852 1.056770846 1.163302066 1.352645581 0.083622971 0.22768148 1.482882745 3.32721683 0.090221237 0.19770067 3.43E-06 5.464644852 0.189343515 HGAPS(ph)PSHPISAPQAAAAAALR ddPTM_HeLa_A486_30min_R1 3 HGAPSPSHPISAPQAAAAAALR 22 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 HGAPS(0.457)PS(0.457)HPIS(0.086)APQAAAAAALR;HGAPS(0.864)PS(0.136)HPISAPQAAAAAALR;HGAPS(0.933)PS(0.067)HPISAPQAAAAAALR ;; 183.49 1.23E-19 567360000 493910 610540 480941 108304 649560 561120 553150 615760 576291 392210 TRUE FALSE FALSE 459289.4596 562158.5869 667174.2352 252137.1854 568086.1279 491894.7195 414746.0194 475564.8899 626244.3679 293998.0631 1.562219338 1.912116634 2.26931507 0.857615124 1.932278471 1.673122313 1.41071004 1.617578309 2.130096917 1 18.16544713 -10.4958189 3.030920321 0.979323186 1.699055665 0.239438113 0.377886343 73215234.97 84799006.94 12624691.01 0.095969948 3.19E-11 10.4958189 0.719732479 HGAPS(ph)PSHPISAPQAAAAAALRR ddPTM_HeLa_A485_30min_R1 2 HGAPSPSHPISAPQAAAAAALRR 23 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 HGAPS(0.997)PS(0.003)HPISAPQAAAAAALRR;HGAPS(0.998)PS(0.002)HPISAPQAAAAAALRR ; 190.19 3.56E-21 534040000 138115 236309 178957 117843 277310 192628 286520 353450 157032 172431 TRUE FALSE FALSE 168838.2053 263943.2819 245160.6413 124280.4647 249700.0427 202713.7042 225302.6613 266765.8333 188546.882 129447.1251 1.304302472 2.039004588 1.893905648 0.960086712 1.928973259 1.565996187 1.740499538 2.060809255 1.456555191 1 16.9820034 -8.012033923 23.98270709 0.999999963 1.69145513 0.293944947 0.325199387 427.9447239 852863.8472 0.306752237 0.079203087 9.73E-09 8.012033923 0.691455167 HGAPS(ph)PSHPISAPQAAAAAALRR ddPTM_HeLa_A486_30min_R1 1 HGAPSPSHPISAPQAAAAAALRR 23 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 HGAPS(0.996)PS(0.004)HPISAPQAAAAAALRR 150.48 1.08E-09 556410000 285140 220770 194330 58534 294740 199300 271320 255700 159560 233550 TRUE FALSE FALSE 265153.1585 203275.3812 269579.7803 136270.1101 257770.9609 174712.3923 203432.8663 197482.6919 173390.7893 175067.5598 1.514576194 1.161125347 1.539861415 0.778385843 1.472408487 0.997971255 1.162024915 1.128037039 0.990422151 1 17.41755225 -1 0.279215211 1.029837071 4.235923874 0.292998889 0.20471963 68.19206248 0.960770925 0.212980388 106.5754112 0.1 1 3.206086803 HGAPSPS(ph)HPISAPQAAAAAALR ddPTM_HeLa_A485_30min_R1 1 HGAPSPSHPISAPQAAAAAALR 22 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 HGAPS(0.428)PS(0.554)HPIS(0.017)APQAAAAAALR 182.02 1.27E-19 169210000 92377 90424 100310 105440 139680 79512 114340 92326 98997 164590 TRUE FALSE FALSE 112925.945 100998.3002 137418.8432 111199.9202 125772.9688 83675.12537 89910.32493 69682.90374 118864.7898 123560.7421 0.913930615 0.817397974 1.112156183 0.899961576 1.017903961 0.677198307 0.727660934 0.563956663 0.961994788 1 16.91486091 -6.259499035 24.99316677 0.755253104 0.950753705 0.244480269 0.140844183 212.0510844 2731395.959 0.0459159 0.043726437 5.50E-07 6.259499035 0.195500601 HGEEVS(ph)PAASDLAMVLTR ddPTM_HeLa_A485_30min_R1 1 HGEEVSPAASDLAMVLTR 18 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 HGEEVS(1)PAASDLAMVLTR 103.31 0.00014495 23229000 15639 19945 14746 21244 22689 18257 24489 28876 16928 26496 TRUE FALSE FALSE 19117.8416 22277.39425 20201.15903 22404.50593 20430.00349 19212.90829 19256.72509 21794.11572 20325.29433 19891.03482 0.961128557 1.119971608 1.015591155 1.126362008 1.02709606 0.965907931 0.968110773 1.095675309 1.021831921 1 14.27983071 -5.986811604 24.98655703 1.011742651 1.059886303 0.12723722 0.055707587 466.1980483 883246.5664 0.017077051 0.019353453 1.03E-06 5.986811604 0.048143652 HGEEVS(ph)PAASDLAMVLTR ddPTM_HeLa_A486_30min_R1 1 HGEEVSPAASDLAMVLTR 18 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 HGEEVS(1)PAASDLAMVLTR 131.59 5.51E-06 20268000 26170 31501 22198 14310 38556 30182 35554 40895 27688 35471 TRUE FALSE FALSE 24335.61814 29004.74604 30793.66008 33314.40319 33719.94696 26458.45171 26658.01315 31584.10123 30088.01813 26588.83072 0.915257177 1.090862037 1.158142695 1.252947282 1.268199693 0.995096474 1.002601936 1.187871011 1.131603659 1 14.69853271 -9.323747175 14.14831376 0.999992417 1.116572559 0.085047078 0.108425545 0 0 0.111984025 0.027160116 4.75E-10 9.323747175 0.116580142 HGESAWNLENR ddPTM_HeLa_A485_30min_R1 1 HGESAWNLENR 11 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 0 110.08 0.0019473 364380000 503240 463950 460210 684390 710560 585660 874840 861020 504050 956980 FALSE FALSE TRUE 615184.0018 518204.9167 630460.8299 721776.4927 639814.1515 616324.252 687923.2872 649853.495 605208.2116 718422.4979 0.856298353 0.721309422 0.87756276 1.004668555 0.890582009 0.857885511 0.957546972 0.904556159 0.842412666 1 19.454473 -4.956530598 8.033892949 0.917900487 0.790528162 0.441876979 0.059320937 0.213313901 34.18579703 0.015021011 0.031341927 1.11E-05 4.956530598 -0.127372325 HGEVCPAGWKPGSDTIKPDVQK ddPTM_HeLa_A486_30min_R1 2 HGEVCPAGWKPGSDTIKPDVQK 22 2 Q06830;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 116.48 2.66E-06 990715000 2879337 2567084 1029199 1501627 2848575 3471840 4200050 3790399 2044756 4504978 FALSE FALSE TRUE 2677510.345 2363658.915 1427732.416 3495863.544 2491280.162 3043519.68 3149153.066 2927407.892 2221997.096 3376902.186 0.792889518 0.699948883 0.422793536 1.035227955 0.737741286 0.90127564 0.932556791 0.866891527 0.657998655 1 21.68726896 -5.270129436 24.99596089 0.868064193 0.644684464 0.387812605 0.136374694 665.2705708 1913574.393 0.03767192 0.056869949 5.37E-06 5.270129436 -0.223379729 HGGNVSLDVLPVKGPQGS(ph)PLLSR ddPTM_HeLa_A485_30min_R1 2 HGGNVSLDVLPVKGPQGSPLLSR 23 1 Q8TEP8;K7EPA2;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 0 HGGNVSLDVLPVKGPQGS(1)PLLSR;HGGNVSLDVLPVKGPQGS(0.955)PLLS(0.045)R ; 127.28 1.94E-06 475660000 546099 668580 560620 475506 815530 718350 1044400 1194850 565030 800200 TRUE FALSE FALSE 667576.8385 746764.6151 768016.6673 501481.6887 734332.9697 755961.6952 821255.408 901811.164 678426.3382 600724.8666 1.111285508 1.243105882 1.278483229 0.83479429 1.222411474 1.258415853 1.367107396 1.501204985 1.129346188 1 19.19634486 -5.991917794 24.99899987 1.284297979 1.123862621 0.111435972 0.167707037 352.4711777 1090216.238 0.0521866 0.059078146 1.02E-06 5.991917794 -0.160435358 HGGNVSLDVLPVKGPQGS(ph)PLLSR ddPTM_HeLa_A486_30min_R1 3 HGGNVSLDVLPVKGPQGSPLLSR 23 1 Q8TEP8;K7EPA2;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 0 HGGNVSLDVLPVKGPQGS(0.782)PLLS(0.218)R;HGGNVSLDVLPVKGPQGS(0.99)PLLS(0.01)R;HGGNVSLDVLPVKGPQGS(0.997)PLLS(0.003)R ;; 140.19 3.86E-12 352460000 522290 436330 297046 143865 567370 444120 619280 598820 383820 634640 TRUE FALSE FALSE 485680.1681 401753.6217 412070.1664 334924.9905 496205.1641 389328.9899 464329.5939 462481.7581 417089.8266 475722.0132 1.020932718 0.844513415 0.866199492 0.70403509 1.043056975 0.818395994 0.976052361 0.972168084 0.876751159 1 18.85975926 -6.621354298 1.347806462 0.952433379 0.874794032 0.084243238 0.097784578 1.083972814 4.013121677 0.054948394 0.036357937 2.39E-07 6.621354298 -0.077639347 HGGPGPGGPEPELS(ph)PITEGSEAR ddPTM_HeLa_A485_30min_R1 3 HGGPGPGGPEPELSPITEGSEAR 23 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 HGGPGPGGPEPELS(0.958)PIT(0.04)EGS(0.002)EAR;HGGPGPGGPEPELS(1)PITEGSEAR;HGGPGPGGPEPELS(0.995)PIT(0.005)EGSEAR ;; 177.82 8.73E-16 1154300000 381500 556260 642560 361935 634230 536830 569550 654480 535690 480230 TRUE FALSE FALSE 466363.3588 621309.7682 880269.6832 381706.5926 571083.8343 564937.5887 447860.9897 493967.7538 643198.0694 360517.499 1.293594237 1.723383109 2.441683651 1.058774106 1.584066892 1.567018495 1.242272541 1.370163044 1.78409667 1 18.45970976 -5.292249273 24.96504436 1.399279057 1.809937268 0.259299016 0.344156881 952.9176873 772140.5771 0.096260554 0.142795885 5.10E-06 5.292249273 0.41065821 HGGPGPGGPEPELS(ph)PITEGSEAR ddPTM_HeLa_A486_30min_R1 3 HGGPGPGGPEPELSPITEGSEAR 23 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 HGGPGPGGPEPELS(0.995)PIT(0.005)EGSEAR;HGGPGPGGPEPELS(1)PITEGSEAR;HGGPGPGGPEPELS(0.999)PIT(0.001)EGSEAR ;; 222.4 3.31E-38 1268500000 486396 541534 456138 235396 604558 502406 605832 608830 443996 607400 TRUE FALSE FALSE 452302.1522 498620.8736 632766.8494 548013.7843 528728.6984 440424.2558 454246.4258 470212.6997 482481.9308 455303.0865 0.99340893 1.095140552 1.389770613 1.203624136 1.161267547 0.967321041 0.997679215 1.032746567 1.05969396 1 18.79646771 -6.193856555 6.095029679 1.012879254 1.180131107 0.399826555 0.095850528 0.252199961 17.78184295 0.034438517 0.03433263 6.40E-07 6.193856555 0.167251853 HGGS(ph)PQPLAT(ph)TPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(1)PQPLAT(0.5)T(0.5)PLSQEPVNPPS(0.007)EAS(0.957)PT(0.036)R;HGGS(1)PQPLAT(0.512)T(0.488)PLSQEPVNPPS(0.01)EAS(0.836)PT(0.154)R ; 201.96 3.49E-28 1802770000 405270 424160 385650 442520 494510 333680 453830 425480 379300 587680 TRUE FALSE FALSE 495420.9133 473761.8223 528317.9832 466693.7471 445274.8481 351150.9688 356865.513 321130.3629 455422.0309 441182.1914 1.122939509 1.073846206 1.197505234 1.057825443 1.009276568 0.795931875 0.808884674 0.72788605 1.032276551 1 18.75101503 -5.964405728 2.436810964 0.852797943 1.120165309 0.589823985 0.093524872 0.186093038 2.236195475 0.031770077 0.035457421 1.09E-06 5.964405728 0.267367366 HGGS(ph)PQPLAT(ph)TPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(1)PQPLAT(0.5)T(0.5)PLSQEPVNPPS(0.001)EAS(0.993)PT(0.005)R;HGGS(1)PQPLAT(0.832)T(0.168)PLSQEPVNPPS(0.068)EAS(0.776)PT(0.156)R ; 217.39 5.90E-38 1203300000 223030 254130 178434 85384 223870 217355 245810 223760 211220 274570 TRUE FALSE FALSE 207396.7487 233991.8133 247528.4234 198778.2671 195790.1371 190539.95 184305.7381 172814.7326 229528.7197 205815.8848 1.007680961 1.136898707 1.20266919 0.965806246 0.951287784 0.92577864 0.895488403 0.839656923 1.115213822 1 17.65099481 -5.377791783 6.238323593 0.943766925 1.117103976 0.444412141 0.081197903 0.198627887 9.459077622 0.022801907 0.033997141 4.19E-06 5.377791783 0.17333705 HGGS(ph)PQPLATTPLS(ph)QEPVNPPSEAS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(1)PQPLATTPLS(1)QEPVNPPS(0.001)EAS(0.865)PT(0.134)R 206.2 1.06E-28 282720000 78077 86460 54259 36276 69663 77962 87361 88019 63161 96095 TRUE FALSE FALSE 72604.20549 79608.59472 75269.53791 84452.36129 60925.21696 68343.8411 65502.35379 67978.99514 68635.84633 72032.18653 1.007941158 1.105180872 1.044943122 1.172425347 0.845805464 0.94879587 0.909348403 0.943730829 0.952849686 1 16.13635408 -5.762935654 24.99999601 0.930173296 1.081542532 0.647506808 0.053895636 23.63163112 394843.3519 0.015580531 0.018631121 1.73E-06 5.762935654 0.151369236 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EAS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(1)PQPLATTPLSQEPVNPPS(1)EAS(0.966)PT(0.034)R 211.79 4.18E-29 501960000 140930 118330 114270 130800 150510 141010 154640 150340 109880 188990 TRUE FALSE FALSE 172279.3923 132167.6642 156543.2282 137945.2728 135524.6959 148393.0656 121599.9007 113468.8793 131931.9081 141878.2711 1.21427609 0.931556771 1.103362953 0.972279065 0.955218124 1.045918197 0.85707205 0.799762207 0.929895093 1 17.11429413 -1 0.36532745 0.902129467 4.25475953 0.44918805 0.083956166 60.52165511 0.84160968 0.068220105 141.7695411 0.1 1 3.352630063 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EAS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(0.998)PQPLAT(0.001)T(0.001)PLSQEPVNPPS(0.999)EAS(0.834)PT(0.166)R 131.18 3.63E-06 557480000 103690 109490 69963 36465 83065 97067 109010 102110 90233 115090 TRUE FALSE FALSE 96421.86646 100813.6136 97054.54727 84892.36284 72646.21315 85091.86044 81734.54501 78861.78205 98054.46909 86270.71489 1.117666251 1.168572832 1.124999919 0.984022944 0.842072692 0.986335404 0.947419354 0.914119955 1.136590432 1 16.39658329 -5.264250404 4.353491861 0.962216098 1.143050574 0.525579898 0.071297276 0.14806771 7.275307783 0.019917004 0.032912504 5.44E-06 5.264250404 0.180834476 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EASPTR ddPTM_HeLa_A485_30min_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.998)PQPLAT(0.001)T(0.001)PLSQEPVNPPS(0.608)EAS(0.331)PT(0.061)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.515)EAS(0.469)PT(0.016)R ; 157.86 6.11E-10 4533040000 92578 95203 114172 115079 121021 92565 132821 111199 85750 133542 TRUE FALSE FALSE 113171.6567 106336.1627 156408.9739 121365.4744 108971.7243 97411.56027 104442.7083 83927.2709 102959.2385 100252.4371 1.128866889 1.060684067 1.560151339 1.210598744 1.08697332 0.971662766 1.041797201 0.837159408 1.026999856 1 16.61327778 -5.93518168 2.605785745 0.970331986 1.251366256 0.471247178 0.13213973 0.254970923 3.514864271 0.046956145 0.053272314 1.16E-06 5.93518168 0.28103427 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EASPTRDR ddPTM_HeLa_A485_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(1)PQPLATTPLS(0.001)QEPVNPPS(0.491)EAS(0.29)PT(0.219)RDR 126.14 9.91E-06 302700000 41826 54153 47952 44095 50042 49050 55313 54264 38482 49072 TRUE FALSE FALSE 51130.0494 60485.72228 65691.44025 46503.7982 45059.64277 51618.18215 43494.92568 40955.66892 46204.98442 36839.2535 1.387923059 1.641882409 1.783191406 1.262343663 1.223142124 1.401173402 1.180667944 1.111739925 1.254232375 1 15.16895621 -5.368568803 6.138238145 1.213714167 1.606425442 0.657543666 0.132332291 0.143996981 7.03620801 0.037785245 0.056394946 4.28E-06 5.368568803 0.392711275 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EASPTRDR ddPTM_HeLa_A486_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(1)PQPLATTPLS(0.001)QEPVNPPS(0.484)EAS(0.257)PT(0.257)RDR 119.59 9.88E-05 267770000 65657 82566 46358 19524 57320 62286 51351 57716 45713 73104 TRUE FALSE FALSE 61054.78335 76023.16946 64309.05911 45452.85869 50130.39111 54601.7866 38502.43666 44575.32673 49675.43965 54798.28257 1.1141733 1.387327593 1.173559756 0.829457723 0.914816829 0.996414195 0.702621229 0.813443864 0.906514535 1 15.74184306 -5.171555255 4.324412173 0.871495555 1.255778337 0.699078003 0.103923194 0.115734336 3.839882666 0.028421594 0.051025979 6.74E-06 5.171555255 0.384282781 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.992)PQPLAT(0.007)TPLSQEPVNPPS(0.143)EAS(0.712)PT(0.145)R;HGGS(0.972)PQPLAT(0.02)T(0.008)PLSQEPVNPPS(0.035)EAS(0.947)PT(0.018)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.022)EAS(0.974)PT(0.003)R ;; 227.35 1.25E-38 7920530000 248166 308468 267546 293380 314900 255734 322188 284914 258980 323163 TRUE FALSE FALSE 303369.6705 344540.6493 366522.3989 309406.6065 283547.4503 269123.8368 253349.9018 215038.3948 310954.9105 242604.4115 1.250470545 1.420174708 1.510782086 1.275354412 1.16876461 1.10931139 1.04429223 0.886374627 1.281736423 1 17.88824626 -5.825938586 1.762488993 1.054118965 1.396180942 0.625699638 0.111390876 0.220353771 1.41299505 0.039803749 0.050161168 1.49E-06 5.825938586 0.342061976 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.995)PQPLAT(0.003)T(0.001)PLSQEPVNPPS(0.001)EAS(0.959)PT(0.041)R;HGGS(1)PQPLATTPLSQEPVNPPSEAS(0.866)PT(0.134)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.097)EAS(0.78)PT(0.123)R ;; 254.23 5.44E-63 8008220000 326984 349716 193226 113682 305519 307906 327312 315467 284476 359792 TRUE FALSE FALSE 304064.1101 322003.2305 268048.282 264657.4412 267197.9582 269919.6883 245415.0756 243642.0507 309134.6087 269697.7413 1.127425497 1.193941147 0.993884045 0.9813113 0.990731168 1.000822947 0.909963407 0.903389289 1.146226169 1 18.04098391 -4.770455957 23.79879571 0.984471487 1.16068332 0.527083601 0.064147326 67.05804021 176999.5869 0.01649022 0.035211005 1.70E-05 4.770455957 0.176211833 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTRDR ddPTM_HeLa_A485_30min_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(1)PQPLATTPLSQEPVNPPS(0.149)EAS(0.463)PT(0.388)RDR;HGGS(0.999)PQPLAT(0.001)T(0.001)PLSQEPVNPPS(0.005)EAS(0.959)PT(0.036)RDR ; 111.08 0.00013509 433980000 95068 133273 113803 104500 119246 125882 134712 128686 110646 131175 TRUE FALSE FALSE 116215.5486 148858.118 155903.4654 110208.5704 107373.4495 132472.9869 105929.6807 97125.55673 132851.6373 98475.4866 1.180146985 1.511626123 1.583170298 1.119147254 1.090357136 1.345238205 1.075695936 0.986291717 1.349083329 1 16.58747702 -5.27789759 24.62065284 1.141459303 1.433645633 0.430040523 0.151279722 591.7296841 885196.5485 0.042168766 0.062765683 5.27E-06 5.27789759 0.29218633 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTRDR ddPTM_HeLa_A486_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.998)PQPLAT(0.001)T(0.001)PLSQEPVNPPS(0.332)EAS(0.586)PT(0.081)RDR 101.45 0.00033308 268560000 73468 81298 48010 24289 66536 64733 78523 77073 62130 97468 TRUE FALSE FALSE 68318.27259 74855.6504 66600.75775 56546.0195 58190.43446 56746.90062 58875.71487 59525.16039 67515.47842 73061.37839 0.935080532 1.02455842 0.911572697 0.773952268 0.796459576 0.776701752 0.805839093 0.814728133 0.924092591 1 16.15682135 -5.019261581 5.240297734 0.828363342 0.978567638 0.372827234 0.070740847 0.151705973 12.56078745 0.018391522 0.035317142 9.57E-06 5.019261581 0.150204295 HGGS(ph)PQPLATTPLSQEPVNPPSEASPTR ddPTM_HeLa_A486_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HGGS(0.953)PQPLAT(0.039)T(0.008)PLSQEPVNPPSEASPTR 110.98 0.0002061 367990000 37960 45673 36558 14882 44469 37166 51749 54514 35057 48336 TRUE FALSE FALSE 35299.20003 42053.70514 50714.23666 34646.04809 38891.28336 32580.8368 38800.85285 42102.35223 38095.76899 36232.35099 0.974245365 1.160667304 1.399694894 0.956218604 1.073385588 0.899219507 1.070889738 1.162009947 1.051429674 1 15.1449908 HGGSPQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_A485_30min_R1 5 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HGGSPQPLATTPLSQEPVNPPS(0.001)EAS(0.987)PT(0.013)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.993)PT(0.006)R;HGGSPQPLATTPLSQEPVNPPS(0.002)EAS(0.965)PT(0.033)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.854)PT(0.146)R;HGGSPQPLATTPLSQEPVNPPS(0.003)EAS(0.874)PT(0.123)R ;;;; 220.74 1.93E-38 5289410000 966402 1153662 1089158 944026 1292944 865848 1214736 1009289 982584 1288134 TRUE FALSE FALSE 1181374.791 1288572.735 1492082.868 995595.75 1164213.956 911182.4624 955197.7301 761759.2902 1179779.596 967025.9001 1.221657859 1.332511089 1.542960605 1.029544038 1.203911866 0.942252387 0.987768508 0.787734114 1.220008271 1 19.883195 -5.643410598 1.603608494 0.984841998 1.35319407 0.500903488 0.147011303 0.293504508 1.553276865 0.050470776 0.07573638 2.27E-06 5.643410598 0.368352072 HGGSPQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_A486_30min_R1 4 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HGGSPQPLATTPLSQEPVNPPS(0.002)EAS(0.991)PT(0.007)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.757)PT(0.243)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.993)PT(0.007)R;HGGSPQPLATTPLSQEPVNPPSEAS(0.946)PT(0.054)R ;;; 278.57 2.86E-77 4895770000 2153450 2088180 1381730 225889 1819380 1768000 1735490 1714490 1778320 1770050 TRUE FALSE FALSE 2002504.275 1922705.012 1916772.86 525881.0078 1591176.395 1549882.136 1301252.046 1324138.054 1932466.209 1326817.959 1.509253219 1.449109879 1.444638918 0.39634752 1.199242432 1.168119654 0.980731409 0.997980202 1.456466727 1 20.33953901 -5.047785891 24.99999015 1.030143154 1.471106734 0.389010215 0.252468686 385.8069566 201840.8522 0.067704526 0.117271559 8.96E-06 5.047785891 0.440963579 HGGVCAPAAVATS(ph)PPGAIPK ddPTM_HeLa_A485_30min_R1 3 HGGVCAPAAVATSPPGAIPK 20 0 A0A494BZT8;Q9Y6A5;E7EMT0 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 HGGVCAPAAVAT(0.004)S(0.996)PPGAIPK;HGGVCAPAAVAT(0.007)S(0.993)PPGAIPK;HGGVCAPAAVAT(0.002)S(0.998)PPGAIPK ;; 173.09 6.67E-14 2815770000 687390 612150 522150 959370 988670 661940 1116090 1049440 601990 1210290 TRUE FALSE FALSE 840297.534 683735.6175 715315.0135 1011777.954 890234.5434 696598.1548 877628.2539 792063.1945 722803.8712 908586.9767 0.92483995 0.752526324 0.787282926 1.113573031 0.979801127 0.766682962 0.965926517 0.871752749 0.795525238 1 19.7932651 HGGVCAPAAVATS(ph)PPGAIPK ddPTM_HeLa_A486_30min_R1 2 HGGVCAPAAVATSPPGAIPK 20 0 A0A494BZT8;Q9Y6A5;E7EMT0 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 HGGVCAPAAVAT(0.006)S(0.994)PPGAIPK;HGGVCAPAAVAT(0.005)S(0.995)PPGAIPK ; 210.43 7.42E-27 2551600000 920600 860960 506850 393530 874720 997250 1226600 1188640 699610 1275210 TRUE FALSE FALSE 856070.694 792734.394 703115.8939 916157.7279 765004.4612 874219.4343 919691.7063 918012.6198 760252.7581 955889.1158 0.895575313 0.829316268 0.735562193 0.95843515 0.800306697 0.914561553 0.962132209 0.960375638 0.79533572 1 19.86648375 -6.392526727 6.322186298 0.927712108 0.843626718 0.239426627 0.073938673 0.368054514 17.36415688 0.02577949 0.022635521 4.05E-07 6.392526727 -0.08408539 HGHFGWPGWEMGPPGNWS(ph)PRPPR ddPTM_HeLa_A485_30min_R1 6 HGHFGWPGWEMGPPGNWSPRPPR 23 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR ;;;;; 211.92 5.36E-29 13713420000 1198069 1395711 1316346 1384020 1644102 1390414 1691460 1882750 1106350 1841750 TRUE FALSE FALSE 1464575.316 1558927.26 1803317.163 1459625.508 1480409.432 1463213.927 1330065.753 1421002.61 1328384.297 1382635.62 1.059263406 1.127504049 1.3042606 1.055683426 1.070715531 1.058278773 0.96197851 1.02774917 0.960762386 1 20.39898957 -5.990138887 1.338413224 0.993887199 1.154581789 0.500864982 0.066419841 0.363399486 1.34833525 0.029036417 0.033079221 1.02E-06 5.990138887 0.160694591 HGHFGWPGWEMGPPGNWS(ph)PRPPR ddPTM_HeLa_A486_30min_R1 8 HGHFGWPGWEMGPPGNWSPRPPR 23 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR;HGHFGWPGWEMGPPGNWS(1)PRPPR ;;;;;;; 204.89 1.60E-28 12717236000 1308028 1207218 1137106 505970 1541363 1231311 1376574 1380711 979510 1288871 TRUE FALSE FALSE 1216341.992 1111553.649 1577423.896 1177923.73 1348030.88 1079404.368 1032140.625 1066353.246 1064414.715 966129.3125 1.258984668 1.150522642 1.632725429 1.219219534 1.395290322 1.117246267 1.068325546 1.103737597 1.101731105 1 19.88185678 -6.350789978 5.122388591 1.079833349 1.331448101 0.511812425 0.123922523 0.197840613 8.562654492 0.044118389 0.03879533 4.46E-07 6.350789978 0.251614753 HGHFGWPGWEMGPPGNWSPRPPR ddPTM_HeLa_A485_30min_R1 2 HGHFGWPGWEMGPPGNWSPRPPR 23 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 0 0 ; ; 47.392 0.0293 25579000 15524.1 20894.5 18982.9 12333.8 22087.1 18908 24104.2 25722 14312.6 18755.1 FALSE FALSE TRUE 18977.38249 23337.93002 26005.46465 13007.56426 19888.03077 19897.99364 18954.14076 19413.63917 17185.00754 14079.79873 1.347844728 1.657547133 1.847005426 0.923845895 1.412522377 1.413229977 1.346194013 1.37882931 1.220543551 1 13.78133909 -10.46584448 0.064879468 4.06E-11 2.122732535 0.292540023 0.217876927 194.1482509 2.078175728 51.36405449 21.03642811 3.42E-11 10.46584448 2.122732535 HGILQFLHIYHAVK ddPTM_HeLa_A485_30min_R1 2 HGILQFLHIYHAVK 14 0 D6RGF8;A0A0C4DGB2;E1CEI4;P48506;A0A2R8YEL6 D6RGF8 GCLC Glutamate--cysteine ligase catalytic subunit 0 0 ; ; 211.67 2.12E-17 63414000 28299 53854 41295 64247 60947 26005 77070 63680 32174 71296 FALSE FALSE TRUE 34594.01492 60151.75683 56571.73893 67756.65093 54878.90268 27366.58159 60603.3649 48062.38015 38631.02668 53523.21931 0.646336588 1.123844149 1.056956956 1.265930036 1.025328883 0.511302981 1.132281759 0.897972521 0.721762016 1 15.70787727 -6.036064165 24.9817017 0.853157997 1.046954144 0.136049047 0.212148001 1097.183243 760018.1384 0.069251421 0.069275743 9.20E-07 6.036064165 0.193796146 HGILQFLHIYHAVK ddPTM_HeLa_A486_30min_R1 2 HGILQFLHIYHAVK 14 0 D6RGF8;A0A0C4DGB2;E1CEI4;P48506;A0A2R8YEL6 D6RGF8 GCLC Glutamate--cysteine ligase catalytic subunit 0 0 ; ; 170.07 6.99E-08 53813000 25308.9 29097 23419.4 16583.2 36587 22763.6 50669 42314 29280 53191 FALSE FALSE TRUE 23534.87681 26791.24775 32488.01887 38606.52767 31997.9173 19955.25848 37991.08028 32680.02591 31818.01398 39871.62738 0.590266271 0.671937654 0.814815472 0.968270678 0.802523483 0.500487685 0.952834955 0.819631102 0.79801142 1 15.28307487 -14 0.033073537 2.196469013 5.13E-16 0.272641261 0.132597401 1892.429721 4.691022593 254.1620368 93.79686764 1.00E-14 14 -2.196469013 HGIVEDWDLMER ddPTM_HeLa_A485_30min_R1 1 HGIVEDWDLMER 12 0 F8WDR7;B4DXW1;P61158 F8WDR7 ACTR3 Actin-related protein 3 0 0 170.04 5.22E-10 50618000 25248 34023 62253 27251 63187 28772 48577 35980 38976 41026 FALSE FALSE TRUE 30864.3305 38001.69389 85282.97526 28739.65313 56895.88042 30278.45743 38198.12711 27155.84859 46798.12569 30798.97323 1.00212206 1.233862363 2.769020078 0.933136729 1.847330429 0.983099573 1.240240278 0.881712789 1.51947032 1 14.91059463 -6.272391367 24.50272773 1.124720115 1.571801903 0.150987652 0.511831575 1105.410263 2473110.768 0.177857443 0.158423355 5.34E-07 6.272391367 0.447081788 HGK(ac)YMACCLLYR ddPTM_HeLa_A485_30min_R1 1 HGKYMACCLLYR 12 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 1 HGK(1)YMACCLLYR 141.73 0.0001645 22820000 22453 19319 19563 19533 29692 26271 33472 43524 28684 44216 FALSE TRUE FALSE 27447.59239 21578.189 26800.16778 20600.03833 26735.76023 27646.50894 26320.43376 32849.67076 34440.61569 33193.76494 0.826890003 0.650067536 0.807385599 0.620599633 0.805445248 0.832882591 0.792933065 0.989633771 1.0375628 1 15.01862465 -7.142453008 1.222220887 1.036816159 0.737948459 0.729116795 0.069006945 0.237510107 0.642255135 0.053917775 0.022466065 7.20E-08 7.142453008 -0.2988677 HGK(ac)YMACCLLYR ddPTM_HeLa_A486_30min_R1 2 HGKYMACCLLYR 12 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 1 ; HGK(1)YMACCLLYR;HGK(1)YMACCLLYR 155.15 1.75E-05 81246000 38337 47407 42360 22129 63428 52891 61627 73236 84745 92969 FALSE TRUE FALSE 35649.77427 43650.29667 58762.92644 51517.43034 55472.2688 46365.84618 46207.27278 56561.76153 92090.76483 69688.95727 0.51155557 0.626358872 0.843217186 0.739248116 0.795997974 0.665325584 0.663050139 0.811631623 1.321454194 1 16.08864245 -7.619420234 5.401320295 1.153598624 0.702560387 0.725876143 0.113243266 0.106079455 4.734292979 0.081029994 0.029062763 2.40E-08 7.619420234 -0.451038237 HGLAHDEMKS(ph)PR ddPTM_HeLa_A485_30min_R1 16 HGLAHDEMKSPR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR ;;;;;;;;;;;;;;; 181.71 1.74E-12 19693681000 9016730 9290030 6992577 14285070 12176100 8928890 15073570 14359980 8494540 17456200 TRUE FALSE FALSE 11022470.48 10376418.2 9579422.218 15065427.2 10963804.73 9396392.874 11852978.63 10838172.39 10199316.26 13104690.6 0.841108792 0.791809476 0.730991865 1.149620977 0.836632094 0.71702516 0.904483669 0.827045271 0.778295083 1 23.64357996 -11.52386853 2.059860524 2.874398703 0.843783699 0.144195815 0.115472603 9108754.728 546250.0816 79788381.93 0.029387154 2.99E-12 11.52386853 -2.030615004 HGLAHDEMKS(ph)PR ddPTM_HeLa_A486_30min_R1 15 HGLAHDEMKSPR 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR;HGLAHDEMKS(1)PR ;;;;;;;;;;;;;; 174.62 1.06E-10 20895251000 11150648 11081756 5856581 5770313 10207493 12329477 15621831 14699500 9368464 17302905 TRUE FALSE FALSE 10369045.16 10203597.3 8124406.008 13433580.28 8927174.047 10808391.48 11713083.65 11352744.74 10180530 12970144.96 0.799454839 0.786698786 0.626392845 1.035730928 0.688286374 0.833328503 0.903080396 0.875298215 0.784920294 1 23.62869127 -13.99999998 0.099382508 1.586695475 0.689482489 0.241248906 0.104852858 269.6873918 1.822843902 32.83134405 1.760395119 1.00E-14 13.99999998 -0.897212985 HGLAHDEMKS(ph)PREPGYK ddPTM_HeLa_A485_30min_R1 1 HGLAHDEMKSPREPGYK 17 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 HGLAHDEMKS(1)PREPGYK 120.23 0.00010933 98074000 45322 34532 32495 91050 147700 78405 177090 222250 66417 153520 TRUE FALSE FALSE 55403.72254 38570.21701 44516.25273 96023.83095 132994.4694 82510.16456 139253.2748 167742.839 79746.28269 115250.2893 0.480725236 0.334664817 0.386257189 0.833176485 1.15396213 0.71592154 1.208268332 1.455465665 0.691939978 1 16.81441085 -5.397401918 3.032707773 1.05195344 0.38875457 0.637263312 0.214153953 0.162614313 2.844334266 0.063965685 0.100650127 4.00E-06 5.397401918 -0.66319887 HGLAHDEMKS(ph)PREPGYK ddPTM_HeLa_A486_30min_R1 1 HGLAHDEMKSPREPGYK 17 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 HGLAHDEMKS(1)PREPGYK 101.48 0.00078373 104180000 118220 98978 78516 129530 239270 193110 284870 304100 112090 206340 TRUE FALSE FALSE 109933.3885 91134.62281 108919.4979 301552.3861 209258.5255 169286.0516 213592.513 234863.0685 121806.0515 154671.121 0.710755749 0.589215506 0.704200611 1.949636003 1.352925641 1.094490365 1.380946305 1.518467488 0.787516446 1 17.23884433 -5.043303331 24.17738928 1.317408463 0.649166066 0.484780274 0.297329521 238.9549674 133414.5858 0.079253857 0.137287495 9.05E-06 5.043303331 -0.668242398 HGLGVS(ph)T(ph)AQPALVPKVIS(ph)PK ddPTM_HeLa_A485_30min_R1 1 HGLGVSTAQPALVPKVISPK 20 1 Q6UXX5 Q6UXX5 ITIH6 Inter-alpha-trypsin inhibitor heavy chain H6 3 0 HGLGVS(1)T(1)AQPALVPKVIS(1)PK 46.404 0.033633 485480000 290980 222470 222040 929930 296040 344800 525250 445380 267580 1125500 TRUE FALSE FALSE 355707.4971 248485.9313 304181.8359 980729.7212 266565.2181 362853.1948 413026.0466 336149.8567 321280.8516 844933.5633 0.420988717 0.294089313 0.360006809 1.160718149 0.315486601 0.429445829 0.488826654 0.397841761 0.380243922 1 19.68847838 -10.1268898 4.561359473 1.000052697 0.476157599 0.308626673 0.237022591 219072977 81235.60835 125457.9796 0.058523369 7.47E-11 10.1268898 -0.523895097 HGLINFGIYKR ddPTM_HeLa_A485_30min_R1 1 HGLINFGIYKR 11 1 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 0 68.657 0.022779 6314700 8306.3 11505 7690.4 8833.6 10779 7990.6 12021 12954 6889.3 11117 FALSE FALSE TRUE 10154.00778 12850.40967 10535.39898 9316.1572 9705.804913 8408.97546 9452.615147 9777.011189 8271.919318 8345.736493 1.216670067 1.539757417 1.262368994 1.11627742 1.162965656 1.007577398 1.132628038 1.17149771 0.991155103 1 13.02682365 -5.138049081 3.061773971 1.090749768 1.382623984 0.607067174 0.096714799 0.160181698 2.851246078 0.025778866 0.050017485 7.28E-06 5.138049081 0.291874216 HGLLLPAS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 HGLLLPASPVR 11 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 HGLLLPAS(1)PVR;HGLLLPAS(1)PVR;HGLLLPAS(1)PVR;HGLLLPAS(1)PVR ;;; 174.9 1.52E-08 1855720000 1081420 1461060 1351560 1134790 1723810 1293170 1642420 1817560 1196770 1478370 TRUE FALSE FALSE 1321978.148 1631918.257 1851558.287 1196780.704 1552181.424 1360878.382 1291503.55 1371800.56 1436950.762 1109839.566 1.191143466 1.470409154 1.668311658 1.078336672 1.398563784 1.226193788 1.163684904 1.236035011 1.29473737 1 20.08191971 -5.274703836 24.99712126 1.217380508 1.446000218 0.35373744 0.149558687 868.1174687 1635981.926 0.04139455 0.061804197 5.31E-06 5.274703836 0.228619709 HGLLLPAS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 HGLLLPASPVR 11 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 HGLLLPAS(1)PVR;HGLLLPAS(1)PVR;HGLLLPAS(1)PVR;HGLLLPAS(1)PVR ;;; 163.51 6.37E-08 1625770000 1356570 1399520 1084975 444953 1502610 1281810 1420550 1497890 1186060 1534900 TRUE FALSE FALSE 1261481.448 1288616.938 1505106.377 1035873.071 1314138.643 1123673.315 1065113.365 1156853.146 1288868.636 1150551.049 1.096415017 1.119999794 1.308161317 0.900327779 1.142181951 0.976639251 0.925741944 1.005477459 1.120218556 1 20.13389357 -5.267691011 24.9981126 1.010908396 1.169372818 0.425009328 0.087754501 484.0056302 1935371.505 0.024472907 0.037300573 5.40E-06 5.267691011 0.158464422 HGLQLGAQS(ph)PGR ddPTM_HeLa_A485_30min_R1 6 HGLQLGAQSPGR 12 0 Q8N1G0;A6PVV7 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR ;;;;; 205.28 2.42E-17 3503330000 2151900 2648040 2473270 2259090 3023270 2395470 3230200 2873480 2450450 3204800 TRUE FALSE FALSE 2630582.731 2957705.243 3388235.494 2382498.366 2722262.623 2520893.105 2540041.382 2168754.525 2942232.838 2405902.34 1.093387162 1.229353825 1.408301342 0.990272268 1.131493402 1.047795275 1.055754151 0.901430822 1.222922805 1 21.19814665 -5.28314867 24.99836134 1.049394987 1.242248111 0.40741443 0.107062297 747.8049587 861099.5834 0.029486385 0.043779884 5.21E-06 5.28314867 0.192853124 HGLQLGAQS(ph)PGR ddPTM_HeLa_A486_30min_R1 6 HGLQLGAQSPGR 12 0 Q8N1G0;A6PVV7 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR ;;;;; 204.23 2.66E-17 3531440000 2714730 2864220 2206100 881164 2757940 2624780 2853530 2949560 2485930 2902000 TRUE FALSE FALSE 2524441.446 2637248.776 3060361.001 2051394.324 2412013.448 2300961.33 2139546.612 2278009.576 2701412.414 2175320.311 1.160491829 1.212349631 1.406855343 0.943030924 1.108808407 1.05775748 0.983554744 1.047206503 1.24184581 1 21.05279642 -5.268286276 24.99945568 1.05599745 1.255144005 0.489123326 0.096104547 454.8197431 1660642.957 0.026852925 0.040813175 5.39E-06 5.268286276 0.199146556 HGLQLGAQS(ph)PGRGTTLAR ddPTM_HeLa_A485_30min_R1 2 HGLQLGAQSPGRGTTLAR 18 1 Q8N1G0;A6PVV7 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 HGLQLGAQS(0.967)PGRGT(0.016)T(0.016)LAR;HGLQLGAQS(0.989)PGRGT(0.005)T(0.005)LAR ; 112.36 5.49E-05 370820000 59351 69586 70187 42784 86902 63265 79242 82182 72521 43403 TRUE FALSE FALSE 72553.42519 77723.47738 96152.09202 45121.18159 78249.73175 66577.45757 62311.29935 62026.73564 87075.2995 32583.43087 2.226696921 2.385368124 2.950950512 1.384789151 2.401519105 2.043291814 1.912361519 1.903628132 2.672379708 1 14.9918509 -10.96739499 2.620268673 0.018644858 2.194848922 0.432534394 0.415153562 9721748.499 2483243.462 57704807.4 0.105720197 1.08E-11 10.96739499 2.176204064 HGLTSGS(ph)ASPPPPALPLYPDPVR ddPTM_HeLa_A485_30min_R1 1 HGLTSGSASPPPPALPLYPDPVR 23 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 HGLT(0.095)S(0.083)GS(0.44)AS(0.382)PPPPALPLYPDPVR 92.198 0.0013494 247030000 75640 133570 93784 54202 137910 129080 122630 177610 108480 95961 TRUE FALSE FALSE 92465.85705 149189.8496 128478.6043 57162.91801 124179.1962 135838.4292 96429.09871 134050.869 130250.941 72039.68873 1.283540485 2.070939675 1.783441968 0.793492018 1.723760865 1.885605443 1.338555183 1.860791897 1.808044194 1 16.13650433 -10.34022729 3.787466213 0.998068574 1.620620654 0.210749592 0.35781118 249660604.8 460650689.9 5640241.025 0.089945635 4.57E-11 10.34022729 0.62255208 HGLTSGSAS(ph)PPPPALPLYPDPVR ddPTM_HeLa_A485_30min_R1 1 HGLTSGSASPPPPALPLYPDPVR 23 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 HGLT(0.003)S(0.006)GS(0.04)AS(0.952)PPPPALPLYPDPVR 130.9 1.78E-06 293480000 117840 161980 182980 129270 249320 169590 176320 247000 179460 191940 TRUE FALSE FALSE 144053.1015 180922.152 250671.9164 136331.6928 224496.8254 178469.4702 138647.7916 186422.8627 215475.9759 144092.8904 0.999723866 1.255593884 1.739654994 0.946137539 1.558000709 1.238572352 0.96221119 1.293768639 1.495396305 1 17.13663963 -6.51319853 24.65821862 1.196334347 1.311764617 0.038700113 0.258886549 1550.88901 3950569.709 0.09456724 0.077681048 3.07E-07 6.51319853 0.11543027 HGNRNS(ph)NS(ph)YGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAK ddPTM_HeLa_A485_30min_R1 1 HGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAK 52 1 P46109 P46109 CRKL Crk-like protein 2 0 HGNRNS(0.318)NS(0.318)Y(0.302)GIPEPAHAY(0.294)AQPQT(0.153)T(0.153)T(0.153)PLPAVS(0.153)GS(0.153)PGAAITPLPSTQNGPVFAK 68.722 7.70E-05 211250000 11537 8447.2 10943 7863.4 17544 14219 14959 17526 15211 13202 TRUE FALSE FALSE 14103.36585 9435.026559 14991.27108 8292.957631 15797.25776 14963.48485 11762.88745 13227.72102 18263.70818 9910.984365 1.423003541 0.951976737 1.512591537 0.836744094 1.593914104 1.509787959 1.186853597 1.334652597 1.842774391 1 13.27481264 -5.796806955 24.99998873 1.421761994 1.188392495 0.137156657 0.281955068 349.1540571 246801.8626 0.083247174 0.094396932 1.60E-06 5.796806955 -0.233369499 HGNRNS(ph)NSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAK ddPTM_HeLa_A486_30min_R1 1 HGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAK 52 1 P46109 P46109 CRKL Crk-like protein 1 0 HGNRNS(0.375)NS(0.297)Y(0.265)GIPEPAHAY(0.058)AQPQT(0.002)T(0.002)T(0.002)PLPAVSGSPGAAITPLPSTQNGPVFAK 153.46 8.78E-15 1068800000 128920 152300 124070 45580 171850 164400 234300 214540 157010 187830 TRUE FALSE FALSE 119883.3737 140231.1933 172113.2267 106112.5435 150294.9706 144117.9995 175675.6618 165693.9254 170619.7532 140796.1454 0.851467726 0.995987446 1.222428542 0.753660856 1.067465094 1.023593359 1.24773062 1.176835665 1.211821195 1 17.10324831 -6.627344336 5.24667747 1.173111871 0.986183016 0.296150563 0.131181929 0.260735225 11.15070931 0.05022914 0.038470847 2.36E-07 6.627344336 -0.186928855 HGNRNSNS(ph)YGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAK ddPTM_HeLa_A485_30min_R1 1 HGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAK 52 1 P46109 P46109 CRKL Crk-like protein 1 0 HGNRNS(0.091)NS(0.427)Y(0.369)GIPEPAHAY(0.105)AQPQT(0.004)T(0.004)T(0.001)PLPAVSGSPGAAITPLPSTQNGPVFAK 177.19 3.89E-20 794890000 80927 81002 70012 85418 118060 91209 152340 164990 64260 141940 TRUE FALSE FALSE 98928.93196 90474.47928 95912.35224 90084.16905 106305.5319 95984.5622 119791.3145 124525.9438 77156.39257 106556.9702 0.928413522 0.849071432 0.900103973 0.845408507 0.997640339 0.900781638 1.124199705 1.16863255 0.724085833 1 16.70126544 -6.024235743 1.776760267 1.007482635 0.88073806 0.135790281 0.117617814 0.628306285 3.997725203 0.044833764 0.048585209 9.46E-07 6.024235743 -0.126744575 HGPPLGESVAYHSESPNSQTDVGRPLS(ph)GSGISAFVQAHPSNGQR ddPTM_HeLa_A485_30min_R1 2 HGPPLGESVAYHSESPNSQTDVGRPLSGSGISAFVQAHPSNGQR 44 1 O95835-2;O95835;H0YG09 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 HGPPLGESVAYHSESPNS(0.002)QT(0.002)DVGRPLS(0.904)GS(0.034)GIS(0.058)AFVQAHPSNGQR;HGPPLGESVAYHSESPNS(0.001)QT(0.005)DVGRPLS(0.947)GS(0.036)GIS(0.01)AFVQAHPSNGQR ; 239.79 1.08E-52 761560000 21578.8 37229 40758 17276.1 55581 28114 36612 27527.6 35588 30728 TRUE FALSE FALSE 26378.92961 41582.6077 55836.08028 18219.8496 50047.16048 29586.00557 28789.54711 20776.41294 42730.18517 23068.07511 1.143525391 1.80260414 2.420491524 0.789829646 2.169542116 1.282551987 1.248025549 0.90065655 1.852351571 1 14.49361 -6.481638225 24.72176536 1.245309338 1.672150005 0.146669506 0.492933595 842.4683492 505020.9613 0.167644056 0.147829868 3.30E-07 6.481638225 0.426840667 HGPSSSHMHNT(ph)GADSPSCSNGVASTK ddPTM_HeLa_A486_30min_R1 1 HGPSSSHMHNTGADSPSCSNGVASTK 26 0 A0A0D9SEU5;R4GMX8;Q6VN20-2;Q6VN20-3;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 0 HGPS(0.106)S(0.106)S(0.017)HMHNT(0.442)GADS(0.327)PS(0.002)CSNGVASTK 117.88 0.00032932 93621000 136620 148130 136520 2161 192130 82916 98529 87606 145180 12767 TRUE FALSE FALSE 127043.6435 136391.6393 189384.2001 5030.917211 168031.2639 72686.66695 73876.00207 67660.02623 157764.3193 9570.060101 13.27511449 14.25191043 19.78923833 0.525693377 17.55801553 7.595215305 7.719491966 7.069968789 16.48519629 1 13.22431227 -6.757171659 0.14042942 1.03E-13 20.14794772 0.229552843 5.629730994 12.89447765 1.19186219 60.8274689 91.10754835 1.75E-07 6.757171659 20.14794772 HGRDDS(ph)FDSLDSFGSR ddPTM_HeLa_A486_30min_R1 1 HGRDDSFDSLDSFGSR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 HGRDDS(1)FDSLDSFGSR 145.77 1.12E-08 0 72493 96716 70078 21705 126860 78997 115730 130870 81977 116290 TRUE FALSE FALSE 67411.61505 89051.87193 97214.07835 50530.33691 110948.0359 69251.15332 86773.12993 101073.7579 89082.83236 87170.22708 0.773333021 1.021585866 1.115221121 0.57967426 1.272774428 0.794435849 0.995444578 1.159498618 1.021941038 1 16.41154785 -7.003762081 24.91905615 1.069926232 0.935425407 0.094977561 0.184791999 354.0465208 2345117.457 0.075059391 0.049377457 9.91E-08 7.003762081 -0.134500825 HGRDDSFDSLDS(ph)FGSR ddPTM_HeLa_A485_30min_R1 1 HGRDDSFDSLDSFGSR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 HGRDDS(0.008)FDS(0.202)LDS(0.75)FGS(0.04)R 88.755 0.00054671 262470000 28514 63647 50738 33547 62726 47705 59434 85909 46358 47494 TRUE FALSE FALSE 34856.84093 71089.96299 69508.09758 35379.58766 56480.7792 50202.76003 46735.44037 64839.68305 55661.62538 35654.61986 0.977624809 1.993849977 1.949483625 0.992286211 1.584108298 1.408029597 1.310782181 1.818549274 1.561133609 1 15.1218014 -5.236276359 24.9915419 1.42275559 1.675672425 0.091227596 0.352433976 1932.652645 1919479.888 0.094024135 0.16277423 5.80E-06 5.236276359 0.252916835 HGS(ph)FHEDEDPIGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 HGSFHEDEDPIGSPR 15 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 HGS(1)FHEDEDPIGS(1)PR 94.463 0.00088585 360760000 265560 282170 214560 274120 369980 267640 403240 410900 249920 356140 TRUE FALSE FALSE 324632.9058 315167.3269 293934.6726 289094.4815 333143.4921 281653.2165 317084.4798 310126.1307 300076.6516 267360.8523 1.214212564 1.178808806 1.099393086 1.081289497 1.246044398 1.053457206 1.185979462 1.159953404 1.122365706 1 18.02842871 -13.61446196 0.310583727 2.12E-09 1.154990558 0.387987196 0.05691321 243.6431337 2.792015108 157.9643831 0.053339248 2.43E-14 13.61446196 1.154990556 HGS(ph)FHEDEDPIGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 HGSFHEDEDPIGSPR 15 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 HGS(1)FHEDEDPIGS(1)PR 115.46 0.00014303 368080000 178610 212000 159100 147440 228580 197280 316510 263000 165400 363100 TRUE FALSE FALSE 166090.3613 195200.3479 220707.7808 343247.7712 199909.365 172941.5994 237315.8503 203120.6412 179737.0052 272177.3966 0.610228342 0.717180597 0.810896803 1.261117843 0.734481876 0.6354003 0.871916086 0.746280344 0.660367126 1 18.05418774 HGS(ph)FNTVQASER ddPTM_HeLa_A485_30min_R1 2 HGSFNTVQASER 12 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8 F8VSE7 E2F7 Transcription factor E2F7 1 0 HGS(0.985)FNT(0.015)VQASER;HGS(0.741)FNT(0.259)VQASER ; 99.055 0.00086605 421850000 243751 324650 327240 347370 435750 334520 485500 425850 313590 526610 TRUE FALSE FALSE 297972.569 362614.9934 448299.6936 366345.9435 392365.2 352034.9499 381768.9588 321409.6198 376524.6366 395335.8185 0.753720141 0.917232835 1.13397186 0.926670254 0.992485835 0.890470667 0.965682695 0.813004045 0.952417208 1 18.59271915 -9.028614795 14.41690534 1.000002644 0.931661318 0.046568162 0.096896755 0 0 0.095159842 0.023079652 9.36E-10 9.028614795 -0.068341326 HGS(ph)FNTVQASER ddPTM_HeLa_A486_30min_R1 2 HGSFNTVQASER 12 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8 F8VSE7 E2F7 Transcription factor E2F7 1 0 HGS(0.954)FNT(0.046)VQASER;HGS(1)FNTVQASER ; 123.92 3.36E-05 477170000 310680 333660 232300 135022 365970 360840 461000 430470 293810 492120 TRUE FALSE FALSE 288902.9364 307219.5664 322252.7812 314338.0396 320066.6301 316323.2296 345652.924 332461.3781 319277.6874 368889.9488 0.78316836 0.832821733 0.873574306 0.852118743 0.86764801 0.857500267 0.937008246 0.901248134 0.865509316 1 18.49283095 -4.324701424 0.026176286 1.649165768 1.15E-08 0.763382493 0.027216188 432.1726875 1.804729018 46.91708126 68.13911276 4.73E-05 4.324701424 -1.649165757 HGS(ph)FVNKPTR ddPTM_HeLa_A485_30min_R1 2 HGSFVNKPTR 10 1 P29353-2;P29353-7;P29353;P29353-6;Q5T181;Q5T182 P29353-2 SHC1 SHC-transforming protein 1 1 0 HGS(1)FVNKPTR;HGS(1)FVNKPTR ; 95.651 0.00032551 319400000 418510 273150 216590 529900 557880 346710 710500 741050 462890 877540 TRUE FALSE FALSE 511606.1057 305092.5164 296715.6541 558847.0952 502335.5084 364863.1995 558695.8707 559306.3256 555787.7771 658785.4279 0.776589894 0.463113638 0.450398023 0.848299115 0.762517638 0.553842244 0.848069564 0.848996201 0.843655238 1 19.32944912 -7.080947622 0.391919292 1.008469716 0.562803122 0.462668916 0.129201629 1.070915197 0.43448533 0.160200301 0.156671698 8.30E-08 7.080947622 -0.445666594 HGS(ph)FVNKPTR ddPTM_HeLa_A486_30min_R1 2 HGSFVNKPTR 10 1 P29353-2;P29353-7;P29353;P29353-6;Q5T181;Q5T182 P29353-2 SHC1 SHC-transforming protein 1 1 0 HGS(1)FVNKPTR;HGS(1)FVNKPTR ; 86.405 0.0018499 721000000 613980 620000 271750 426730 556450 825390 1244920 1391470 498870 1049780 TRUE FALSE FALSE 570943.1726 570868.942 376978.8777 993449.0057 486654.8523 723561.7738 933427.8486 1074662.657 542112.4533 786908.2551 0.725552399 0.725458067 0.479063316 1.262471196 0.618439124 0.919499534 1.186196539 1.365677193 0.688914432 1 19.58583592 -5.710340371 0.815554352 1.067873161 0.661092771 0.225381607 0.249304364 0.976980661 1.39184549 0.132958443 0.240285725 1.95E-06 5.710340371 -0.406780391 HGS(ph)GADS(ph)DYENTQSGDPLLGLEGKR ddPTM_HeLa_A485_30min_R1 2 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 HGS(0.999)GADS(0.695)DY(0.075)ENT(0.131)QS(0.1)GDPLLGLEGKR;HGS(0.992)GADS(0.877)DY(0.13)ENTQSGDPLLGLEGKR ; 75.718 0.0036046 643500000 234280 375860 223822 448720 490760 262140 740730 703910 286990 699500 TRUE FALSE FALSE 286394.7777 419813.5575 306623.0718 473232.4374 441898.2112 275865.2451 582466.9843 531274.9688 344586.2606 525127.5233 0.545381388 0.799450683 0.583902116 0.901176222 0.841506475 0.525330006 1.109191498 1.011706576 0.656195391 1 19.00230829 -2.844382163 0.206906971 0.980222538 3.05E-13 0.260396337 0.171992395 36.1340613 0.857572713 0.323549018 9.97363758 0.001430928 2.844382163 -0.980222538 HGS(ph)GADS(ph)DYENTQSGDPLLGLEGKR ddPTM_HeLa_A486_30min_R1 5 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 HGS(0.997)GADS(0.684)DY(0.302)ENT(0.012)QS(0.005)GDPLLGLEGKR;HGS(1)GADS(0.992)DY(0.005)ENT(0.003)QSGDPLLGLEGKR;HGS(1)GADS(0.997)DY(0.002)ENT(0.001)QSGDPLLGLEGKR;HGS(1)GADS(0.985)DY(0.015)ENTQSGDPLLGLEGKR;HGS(1)GADS(0.975)DY(0.025)ENT(0.001)QSGDPLLGLEGKR ;;;; 141.14 6.20E-08 1480040000 952014 1065600 598766 810080 1267740 940482 2035530 1850930 844087 2169390 TRUE FALSE FALSE 885282.7348 981157.9752 830624.2307 1885907.179 1108728.228 824454.893 1526218.864 1429513.645 917253.1408 1626160.624 0.544400548 0.603358586 0.510788552 1.15972995 0.681807327 0.506994746 0.938541275 0.879072844 0.564060602 1 20.63303834 HGS(ph)GADSDYENTQSGDPLLGLEGK ddPTM_HeLa_A486_30min_R1 2 HGSGADSDYENTQSGDPLLGLEGK 24 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 HGS(0.91)GADS(0.09)DYENTQSGDPLLGLEGK;HGS(0.999)GADS(0.001)DYENTQSGDPLLGLEGK ; 308.21 4.47E-105 716880000 605120 633150 305590 203568 581190 760560 925000 877840 617230 837150 TRUE FALSE FALSE 562704.2128 582976.8881 423922.632 473916.5918 508291.7308 666729.84 693555.2163 677974.9951 670731.9934 627522.1911 0.89670807 0.92901398 0.675550025 0.755218857 0.809998018 1.0624801 1.105228191 1.080400032 1.068857808 1 19.25930695 -6.265693116 6.691564497 1.071696511 0.808382046 0.760196192 0.070142096 0.073156971 19.51390637 0.026207782 0.024399414 5.42E-07 6.265693116 -0.263314465 HGS(ph)GADSDYENTQSGDPLLGLEGKR ddPTM_HeLa_A485_30min_R1 1 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 HGS(0.704)GADS(0.294)DY(0.002)ENTQSGDPLLGLEGKR 98.236 0.0014428 436650000 147430 174820 125570 191310 233590 198750 326080 350200 167190 317970 TRUE FALSE FALSE 180225.2949 195263.6783 172023.5684 201760.7809 210332.9594 209156.2427 256410.3442 264312.9009 200743.4994 238705.9308 0.755009707 0.818009329 0.720650584 0.845227348 0.881138389 0.876208823 1.074168301 1.107274126 0.840965697 1 17.86487489 -6.153287491 1.271455799 1.008998137 0.774855489 0.610207002 0.076453051 0.293053236 0.972267764 0.035753292 0.035409226 7.03E-07 6.153287491 -0.234142648 HGS(ph)GADSDYENTQSGDPLLGLEGKR ddPTM_HeLa_A486_30min_R1 2 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 HGS(0.943)GADS(0.057)DYENTQSGDPLLGLEGKR;HGS(0.964)GADS(0.036)DYENTQSGDPLLGLEGKR ; 182.4 2.49E-20 600460000 579147 516973 291067 210922 618070 588930 859370 809160 457421 886110 TRUE FALSE FALSE 538551.786 476006.1767 403775.9374 491037.0754 540545.8973 516273.8044 644346.5365 624931.9318 497070.6206 664222.2884 0.810800534 0.716636862 0.607892786 0.739266182 0.813802708 0.777260585 0.970076656 0.940847579 0.748349806 1 19.34130661 -6.262237271 1.442030863 0.905983177 0.712599147 0.496311167 0.08344409 0.352813119 1.472824522 0.038641324 0.034931706 5.47E-07 6.262237271 -0.193384031 HGS(ph)GAFYSPELLEALTLR ddPTM_HeLa_A485_30min_R1 1 HGSGAFYSPELLEALTLR 18 0 A0A3B3IU88;Q96EK9 A0A3B3IU88 KTI12 Protein KTI12 homolog 1 0 HGS(0.975)GAFY(0.025)SPELLEALTLR 110.12 4.86E-06 0 3719.7 6923.5 6235 5332.9 8927.7 6836.6 7198.2 8184.3 5180.5 7764.1 TRUE FALSE FALSE 4547.134432 7733.143099 8541.58596 5624.222823 8038.826841 7194.553805 5660.245766 6177.087593 6220.178832 5828.652758 0.780134728 1.326746235 1.465447731 0.964926726 1.379191243 1.234342498 0.971107047 1.059779652 1.067172654 1 12.50894674 -6.755028779 24.96052919 1.02949647 1.208576355 0.153949615 0.189542526 272.3940206 1060606.754 0.072854926 0.055035753 1.76E-07 6.755028779 0.179079885 HGS(ph)GAFYSPELLEALTLR ddPTM_HeLa_A486_30min_R1 1 HGSGAFYSPELLEALTLR 18 0 A0A3B3IU88;Q96EK9 A0A3B3IU88 KTI12 Protein KTI12 homolog 1 0 HGS(0.987)GAFY(0.013)SPELLEALTLR 74.12 0.0038298 9327700 6175.7 7577.1 6016.6 4015.2 10295 7615.5 8897.6 8622.5 5247.6 10007 TRUE FALSE FALSE 5742.815321 6976.663001 8346.38865 9347.588517 9003.705103 6675.977039 6671.326371 6659.344978 5702.466193 7501.182065 0.765588046 0.930075145 1.112676453 1.246148732 1.200304835 0.889990002 0.88937001 0.887772743 0.76020901 1 12.87290224 -6.393490238 8.797047089 0.877136899 1.058362993 0.263972885 0.137689571 0.468935265 31.16693302 0.053600518 0.047215829 4.04E-07 6.393490238 0.181226094 HGS(ph)PEFCGILGER ddPTM_HeLa_A485_30min_R1 2 HGSPEFCGILGER 13 0 Q15464 Q15464 SHB SH2 domain-containing adapter protein B 1 0 HGS(1)PEFCGILGER;HGS(1)PEFCGILGER ; 149.99 4.58E-08 229350000 297020 239735 200503 442760 349181 241026 370720 271725 253690 603370 TRUE FALSE FALSE 363091.0743 267769.9228 274677.4033 466946.8577 314415.3136 253645.7487 291512.6435 205084.0177 304603.256 452960.9632 0.801594627 0.591154525 0.60640414 1.0308766 0.694133356 0.559972645 0.643571228 0.452763117 0.672471318 1 18.7890272 -9.917766486 5.362527928 1.000000521 0.668755891 0.306100736 0.147805958 9.66E-07 1.95E-07 0.150276798 0.03644742 1.21E-10 9.917766486 -0.33124463 HGS(ph)PEFCGILGER ddPTM_HeLa_A486_30min_R1 3 HGSPEFCGILGER 13 0 Q15464 Q15464 SHB SH2 domain-containing adapter protein B 1 0 HGS(1)PEFCGILGER;HGS(1)PEFCGILGER;HGS(1)PEFCGILGER ;; 213.69 1.63E-22 355080000 682850 769860 417789 327286 633300 865360 1064680 940550 620870 1084510 TRUE FALSE FALSE 634985.7412 708853.4898 579568.0896 761938.3481 553865.6087 758600.6815 798285.803 726407.2971 674687.5115 812941.637 0.781096345 0.871961107 0.712927058 0.937260823 0.681310421 0.933155158 0.98197185 0.893554056 0.829933516 1 19.63279226 -6.32497049 24.99978895 0.924460747 0.804211593 0.394226569 0.080773707 237.8530093 93595.44407 0.027020101 0.023829494 4.73E-07 6.32497049 -0.120249154 HGS(ph)PLPAGPCLFGPPLAGAPAGYSPGGVPSAYPELHAALDR ddPTM_HeLa_A485_30min_R1 2 HGSPLPAGPCLFGPPLAGAPAGYSPGGVPSAYPELHAALDR 41 0 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 HGS(1)PLPAGPCLFGPPLAGAPAGYSPGGVPSAYPELHAALDR;HGS(1)PLPAGPCLFGPPLAGAPAGYSPGGVPSAYPELHAALDR ; 178.89 3.72E-22 528710000 36892 48915 40763 43001 69859 45414 83009 61613 34020 62265 TRUE FALSE FALSE 45098.49812 54635.18375 55842.92999 45350.03575 62903.59267 47791.80682 65273.44903 46502.31514 40847.50195 46743.4814 0.964808285 1.168830008 1.194667755 0.970189519 1.345719035 1.0224272 1.396418219 0.994840644 0.873865205 1 15.51247757 -7.505509025 24.7431813 0.936072642 1.152938309 0.30054894 0.138643577 697.8175911 994049.5842 0.073306008 0.03392085 3.12E-08 7.505509025 0.216865667 HGS(ph)SDISS(ph)PR ddPTM_HeLa_A485_30min_R1 1 HGSSDISSPR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 2 0 HGS(0.953)S(0.048)DIS(0.068)S(0.932)PR 77.597 0.019108 689520000 568670 629710 597500 896060 972020 642050 1040700 931540 653480 1348000 TRUE FALSE FALSE 695168.6796 703349.1068 818540.114 945009.4889 875242.2758 675666.7452 818345.9433 703078.3544 784627.4419 1011968.408 0.686947017 0.695030696 0.808859355 0.933832994 0.864890908 0.66767573 0.808667481 0.694763146 0.775347763 1 19.94873282 -11.41320332 2.108292874 2.687630241 0.772993099 0.411682529 0.082202807 2844749.867 241138.3951 22954307.07 0.022291151 3.86E-12 11.41320332 -1.914637142 HGS(ph)SDISS(ph)PR ddPTM_HeLa_A486_30min_R1 2 HGSSDISSPR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 2 0 HGS(0.991)S(0.009)DIS(0.112)S(0.888)PR;HGS(0.966)S(0.034)DIS(0.037)S(0.963)PR ; 144.2 1.19E-05 1031790000 1779850 1956540 1356960 670620 2283840 1950070 2666300 2383300 1676140 2776900 TRUE FALSE FALSE 1655091.706 1801496.645 1882411.253 1561237.251 1997379.491 1709490.19 1999163.539 1840674.617 1821429.165 2081546.165 0.79512611 0.865460817 0.904333175 0.750037293 0.95956531 0.821259801 0.960422388 0.88428239 0.875036641 1 20.98922412 -13.99999997 0.073499447 1.440237618 0.721681754 0.363552411 0.059467846 315.5219278 1.656995734 23.1312071 2.598866986 1.00E-14 13.99999997 -0.718555865 HGS(ph)VSADEAAR ddPTM_HeLa_A485_30min_R1 1 HGSVSADEAAR 11 0 A0A1B0GU90;A0A1B0GW73;H3BNF1;A0A1B0GTV3;A0A0S2Z5D0;H3BUV4;A0A1B0GUD2;H3BUT1;A0A1B0GTU6;Q9NWW5;Q9NWW5-2 A0A1B0GU90 CLN6 Ceroid-lipofuscinosis neuronal protein 6 1 0 HGS(0.96)VS(0.04)ADEAAR 80.287 0.0051028 202230000 53372 96373 77749 54680 95510 83991 89532 109820 85676 96256 TRUE FALSE FALSE 65244.41727 107642.984 106511.5905 57667.02994 86000.68904 88388.63889 70402.75679 82886.47281 102870.3873 72261.15066 0.902897569 1.489638388 1.473981379 0.79803642 1.190137277 1.223183385 0.974282255 1.147040589 1.42359188 1 16.14093261 -5.223259797 24.99858605 1.11681047 1.308918956 0.124125791 0.217268322 1134.390883 742756.1132 0.058230663 0.100855208 5.98E-06 5.223259797 0.192108486 HGS(ph)VSADEAAR ddPTM_HeLa_A486_30min_R1 2 HGSVSADEAAR 11 0 A0A1B0GU90;A0A1B0GW73;H3BNF1;A0A1B0GTV3;A0A0S2Z5D0;H3BUV4;A0A1B0GUD2;H3BUT1;A0A1B0GTU6;Q9NWW5;Q9NWW5-2 A0A1B0GU90 CLN6 Ceroid-lipofuscinosis neuronal protein 6 1 0 HGS(0.997)VS(0.003)ADEAAR;HGS(0.995)VS(0.005)ADEAAR ; 130.44 4.26E-05 310320000 382840 404900 349510 86967 487260 400450 395070 363050 397960 426150 TRUE FALSE FALSE 356004.893 372814.2494 484849.6322 202463.5711 426143.3073 351046.5505 296219.3074 280391.4403 432455.4932 319439.2662 1.114468165 1.167089612 1.517814757 0.633809279 1.334035456 1.098946146 0.927310255 0.877761346 1.353795663 1 18.28518214 -5.234208634 24.99988319 1.038126018 1.256520621 0.189545719 0.221423348 1337.711022 1228118.467 0.058297814 0.100942019 5.83E-06 5.234208634 0.218394604 HGSFHEDEDPIGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 HGSFHEDEDPIGSPR 15 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 HGSFHEDEDPIGS(1)PR 75.215 0.0019522 0 265170 347920 427820 27063 440410 160250 131270 218750 309530 60278 TRUE FALSE FALSE 246582.9523 320349.5521 593483.3614 63004.03169 385169.6711 140479.9843 98424.85757 168945.4003 336360.3096 45183.99646 5.45730727 7.089889723 13.13481338 1.394388204 8.524471082 3.109065052 2.178312351 3.739053947 7.444235482 1 15.46352426 -5.278989493 24.96641473 4.113311845 8.413592935 0.345419768 2.920842331 932.8694183 1327077.912 0.813617707 1.209880756 5.26E-06 5.278989493 4.30028109 HGSLGFLPR ddPTM_HeLa_A485_30min_R1 3 HGSLGFLPR 9 0 H7C422;P39023;H7C3M2;F8WCR1 H7C422 RPL3 60S ribosomal protein L3 0 0 ;; ;; 107.57 0.0025234 233936000 115443 225337 224186 65827 199443 224642 161995 220490 206289 86730.9 FALSE FALSE TRUE 141122.8971 251688.202 307121.7306 69422.96233 179585.7546 236403.9078 127383.4449 166414.4818 247689.3101 65110.48279 2.167437424 3.865555763 4.716932165 1.06623326 2.758169605 3.630811777 1.95641991 2.55587848 3.804138742 1 15.99060222 -10.85420408 2.685164344 0.211154487 2.944550954 0.245321007 1.024383739 31164130.22 17859804.41 156765521.3 0.260097381 1.40E-11 10.85420408 2.733396468 HGSS(ph)DISS(ph)PR ddPTM_HeLa_A485_30min_R1 1 HGSSDISSPR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 2 0 HGS(0.384)S(0.616)DIS(0.014)S(0.986)PR 111.63 0.001397 539720000 459630 519710 485420 781980 754200 487210 851020 741420 503660 989260 TRUE FALSE FALSE 561873.1078 580485.5636 664997.058 824697.5873 679109.1998 512719.5622 669192.6248 559585.5825 604739.9422 742655.688 0.75657282 0.781634845 0.895431179 1.110470977 0.914433446 0.690386636 0.901080589 0.753492623 0.814293827 1 19.50233397 -10.3539214 14.58929441 1.000013544 0.850009446 0.143373837 0.112311215 1.69E-10 0 0.117319333 0.028454118 4.43E-11 10.3539214 -0.150004097 HGSSDIS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 HGSSDISSPR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 0 HGSSDIS(0.606)S(0.394)PR 89.959 0.0023822 249990000 67108 159080 170360 39353 237530 113310 134240 132140 129870 68071 TRUE FALSE FALSE 82035.94308 177683.0222 233383.2533 41502.75474 213880.6792 119242.7364 105558.5274 99732.45781 155933.7178 51102.15245 1.60533244 3.477016401 4.56699458 0.812152771 4.185355585 2.333419057 2.065637596 1.951629296 3.051411932 1 15.64109644 -9.813021404 0.244341478 4.90E-11 3.066703186 0.171523569 1.106852468 23.54819445 1.486436144 19.13321089 2.006011454 1.54E-10 9.813021404 3.066703186 HGSSDIS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 HGSSDISSPR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 0 HGSSDIS(0.5)S(0.5)PR;HGSS(0.001)DIS(0.543)S(0.456)PR ; 80.312 0.0054416 187370000 213740 242400 288020 30080 330240 160964 177296 168262 263860 85560 TRUE FALSE FALSE 198757.9298 223191.3412 399549.0574 70027.76016 288818.2198 141105.8982 132934.6656 129952.4157 286731.5972 64135.2191 3.099044995 3.480012142 6.229791729 1.091876837 4.503270183 2.200131226 2.072724899 2.02622549 4.470735444 1 15.96882919 -5.273863284 24.95226853 2.579051934 4.190656055 0.263458042 1.361853511 1055.310455 2119491.567 0.371773449 0.555752006 5.32E-06 5.273863284 1.611604121 HGSSDISS(ph)PR ddPTM_HeLa_A485_30min_R1 1 HGSSDISSPR 10 0 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 0 HGSSDIS(0.302)S(0.698)PR 100.38 0.00056066 0 54593 129410 149230 25683 174130 66273 78879 96343 95170 73163 TRUE FALSE FALSE 66737.02451 144543.3738 204436.387 27085.99726 156793.0058 69742.9518 62025.85727 72714.72819 114269.746 54924.81057 1.215061533 2.631659032 3.722113647 0.493146849 2.854684507 1.269789574 1.129286685 1.323895839 2.080475925 1 15.74517037 -5.958768629 1.161184575 1.385302539 2.332917916 0.140233352 0.89019695 0.911468913 2.597189864 0.401409749 0.482034498 1.10E-06 5.958768629 0.947615377 HGT(ph)PDPS(ph)PR ddPTM_HeLa_A485_30min_R1 3 HGTPDPSPR 9 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HGT(1)PDPS(1)PR;HGT(1)PDPS(1)PR;HGT(1)PDPS(1)PR ;; 82.803 0.016422 993750000 432541 491684 386787 770989 734607 427255 783930 666542 396622 1044150 TRUE FALSE FALSE 528758.2532 549182.1667 529875.6068 813106.1768 661466.9477 449625.4111 616436.9514 503071.5294 476220.3974 783862.6212 0.674554748 0.700610224 0.675980194 1.037306991 0.843855709 0.573602311 0.786409423 0.641785328 0.607530433 1 19.58024131 -6.213866715 24.99924941 0.703510602 0.789490042 0.037547192 0.149345131 1221.223125 641747.7107 0.049810937 0.049810815 6.11E-07 6.213866715 0.08597944 HGT(ph)PDPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 HGTPDPSPR 9 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HGT(1)PDPS(1)PR;HGT(1)PDPS(1)PR;HGT(1)PDPS(1)PR ;; 107.03 0.00046624 643460000 1042438 1118425 703471 832846 1058877 1115529 1690990 1369370 915955 1934020 TRUE FALSE FALSE 969368.4794 1029796.93 975873.8108 1938907.578 926062.773 977906.3738 1267886.417 1057594.344 995350.7169 1449728.804 0.668655046 0.710337635 0.67314232 1.337427782 0.638783454 0.67454435 0.874567997 0.729511852 0.686577182 1 20.46735161 -11.38268221 2.25158872 2.578889545 0.782910538 0.102045621 0.19771395 17197047.07 2163084.601 137891048.5 0.049746029 4.14E-12 11.38268221 -1.795979007 HGT(ph)PQKYDPTFK ddPTM_HeLa_A485_30min_R1 1 HGTPQKYDPTFK 12 1 K7EMR2;K7ER17;K7EPV6;Q8IWA5;Q8IWA5-2 K7EMR2 SLC44A2 Choline transporter-like protein 2 1 0 HGT(1)PQKYDPTFK 142.54 2.58E-07 248660000 287980 169630 83133 946750 179870 182070 389350 350590 185050 1777700 TRUE FALSE FALSE 352040.1575 189466.7529 113887.3562 998468.5552 161961.5112 191602.9037 306162.1918 264607.2528 222187.8376 1334552.106 0.263788994 0.141970293 0.085337512 0.748167532 0.121360201 0.143570942 0.229411943 0.198274201 0.166488694 1 20.3479242 -10.42453261 3.163056448 1.011548117 0.234211869 0.621327076 0.179596653 74448483.38 95227823.47 7742475.794 0.046851707 3.76E-11 10.42453261 -0.777336249 HGT(ph)PQKYDPTFK ddPTM_HeLa_A486_30min_R1 1 HGTPQKYDPTFK 12 1 K7EMR2;K7ER17;K7EPV6;Q8IWA5;Q8IWA5-2 K7EMR2 SLC44A2 Choline transporter-like protein 2 1 0 HGT(1)PQKYDPTFK 96.247 0.0016715 188510000 123550 135390 50953 107480 130140 276080 232300 206960 155260 452410 TRUE FALSE FALSE 114889.783 124661.2033 70683.36617 250218.8717 113816.6277 242020.0566 174176.083 159839.7259 168718.0618 339123.5913 0.338784402 0.367598146 0.208429516 0.737839767 0.335619906 0.713663286 0.513606506 0.47133178 0.497512017 1 18.37145162 -14 0.131048194 2.729531622 0.255118712 0.564373942 0.148377963 108.8386144 0.895881962 49.72230406 1.100463367 1.00E-14 14 -2.47441291 HGTDLWIDNMS(ph)SAVPNHSPEKK ddPTM_HeLa_A485_30min_R1 1 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;H0YF45;E9PJT7;E9PK28;E9PN48;E9PIY6 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 HGTDLWIDNMS(0.336)S(0.336)AVPNHS(0.328)PEKK 54.259 0.018965 569580000 146990 159390 148740 98403 139050 216710 167670 238500 145840 104400 TRUE FALSE FALSE 179687.4184 178029.274 203765.1156 103778.5067 125205.6938 228056.6005 131845.9348 180007.501 175108.7503 78375.00134 2.292662396 2.271505849 2.599873839 1.324127655 1.597520786 2.909813035 1.682244753 2.296746386 2.23424239 1 16.25810594 -10.30561343 3.517800629 0.995960596 2.126707164 0.361107921 0.452531258 103605667.5 143992447.2 4346136.12 0.111362741 4.95E-11 10.30561343 1.130746568 HGTDLWIDNMSSAVPNHS(ph)PEKK ddPTM_HeLa_A485_30min_R1 5 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;H0YF45;E9PJT7;E9PK28;E9PN48;E9PIY6 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK ;;;; 259.7 2.49E-59 12406500000 7202830 6662690 3915610 11122990 10893530 6794250 16411560 14703180 6735490 19897720 TRUE FALSE FALSE 8805074.684 7441833.638 5364157.081 11730610.78 9808931.904 7149986.424 12905096.14 11097202.05 8087241.061 14937584.59 0.589457728 0.498195246 0.359104717 0.785308408 0.656661178 0.478657468 0.863934598 0.742904717 0.541402193 1 23.83244355 -14 0.084711809 2.247164217 0.267585978 0.444139551 0.139024439 218.0120055 1.29395427 50.01605684 4.070580638 1.00E-14 14 -1.979578239 HGTDLWIDNMSSAVPNHS(ph)PEKK ddPTM_HeLa_A486_30min_R1 5 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;H0YF45;E9PJT7;E9PK28;E9PN48;E9PIY6 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 HGTDLWIDNMS(0.043)S(0.153)AVPNHS(0.804)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSSAVPNHS(1)PEKK;HGTDLWIDNMSS(0.003)AVPNHS(0.997)PEKK;HGTDLWIDNMS(0.001)S(0.004)AVPNHS(0.995)PEKK ;;;; 246.44 4.30E-47 7203750000 1758206 1542114 722044 216669.9 1420679 1687861 2790682 2330828 1301456 2387068 TRUE FALSE FALSE 1634964.839 1419911.27 1001638.774 504418.4771 1242484.193 1479629.871 2092423.847 1800149.346 1414267.254 1789330.636 0.913729864 0.793543263 0.559784063 0.281903449 0.69438491 0.82691809 1.169389159 1.006046233 0.790389001 1 20.77098857 -6.408927412 3.240082726 0.992167099 0.631034404 0.450652673 0.176930718 0.252838666 5.000280876 0.073686215 0.062914659 3.90E-07 6.408927412 -0.361132695 HGVSSGSSSSGGTPVQSSVSGSLVPGIQPPSVGQATSRPVPSSAGK(ac)K ddPTM_HeLa_A486_30min_R1 1 HGVSSGSSSSGGTPVQSSVSGSLVPGIQPPSVGQATSRPVPSSAGKK 47 2 Q9NPG3;Q9NPG3-2 Q9NPG3 UBN1 Ubinuclein-1 0 1 HGVSSGSSSSGGTPVQSSVSGSLVPGIQPPSVGQATSRPVPSSAGK(1)K 42.692 0.0085532 9350600 5354.5 4194.4 4015.3 354.49 4979.4 3225.3 3856.1 4294.2 5141.4 1815.7 FALSE TRUE FALSE 4979.177201 3862.020468 5570.131693 825.2706349 4354.837221 2827.395278 2891.262994 3316.504402 5587.060692 1361.036902 3.658370463 2.8375575 4.092564784 0.606354342 3.199646692 2.077383262 2.12430904 2.436748333 4.105003093 1 10.41049047 -5.202673612 24.99999867 2.31192097 3.460303339 0.269094216 0.978053815 390.3028436 166040.729 0.254132719 0.440170662 6.27E-06 5.202673612 1.148382369 HGYIGEFEIIDDHR ddPTM_HeLa_A485_30min_R1 6 HGYIGEFEIIDDHR 14 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 0 ;;;;; ;;;;; 184.98 3.66E-17 910559600 568152.9 588773.3 665920.2 652883.6 775080 452607.8 680524 591856.5 634496.6 905019 FALSE FALSE TRUE 694536.5525 657625.2158 912271.7932 688548.9779 697910.3137 476305.6445 535124.488 446702.7654 761834.2477 679414.4189 1.022257599 0.967929437 1.342732459 1.013444753 1.027223289 0.701053188 0.78762604 0.657482021 1.121310097 1 19.37393231 -6.08381348 4.798248674 0.828422246 1.089106708 0.32503946 0.158783106 0.242484877 9.730625938 0.052492528 0.053241726 8.24E-07 6.08381348 0.260684462 HGYIGEFEIIDDHR ddPTM_HeLa_A486_30min_R1 5 HGYIGEFEIIDDHR 14 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 0 ;;;; ;;;; 188.13 2.69E-17 762357800 662845 628603.8 526226.2 297224.9 761236 616106.9 717671.5 650250 601584.9 761977 FALSE FALSE TRUE 616382.9884 578790.9456 729995.0775 691954.5881 665754.6826 540097.8948 538102.4999 502202.2699 653730.7635 571172.9996 1.079152882 1.013337371 1.278063 1.211462357 1.165592007 0.945594234 0.94210073 0.879247216 1.144540733 1 19.12356826 -6.258778886 24.65188765 0.972237289 1.152538095 0.449668691 0.092133422 182.6553468 1692470.585 0.032435181 0.031027356 5.51E-07 6.258778886 0.180300806 HHEDNLLR ddPTM_HeLa_A485_30min_R1 1 HHEDNLLR 8 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 132.76 0.0018038 188260000 40848 51326 54635 52495 66358 50971 59065 42072 51195 54317 FALSE FALSE TRUE 49934.49668 57328.12922 74846.76005 55362.66893 59751.16452 53639.76274 46445.28023 31753.77603 61469.36691 40776.77153 1.224581908 1.405901622 1.835524423 1.357701133 1.465323572 1.315448986 1.139013181 0.778722171 1.507460365 1 15.31545994 -6.597222091 2.436118291 1.083474419 1.470264744 0.357503198 0.221727571 0.312133545 3.759415345 0.095801967 0.071114365 2.53E-07 6.597222091 0.386790325 HHEDNLLR ddPTM_HeLa_A486_30min_R1 1 HHEDNLLR 8 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 121.53 0.0024521 110110000 35428 43478 35652 10429 50247 38567 38180 40799 30608 37891 FALSE FALSE TRUE 32944.68015 40032.64494 49457.40919 24279.23905 43944.55273 33808.99566 28626.96017 31509.95834 33261.12608 28402.84697 1.159907673 1.409458882 1.741283514 0.854817092 1.547188307 1.190338268 1.007890519 1.109394363 1.171049019 1 14.79374793 -6.515421425 21.31135552 1.083758632 1.344052673 0.246617398 0.22307925 75.12618755 214702.6285 0.081023914 0.065771447 3.05E-07 6.515421425 0.260294041 HHEEEIVHHK(ac)K ddPTM_HeLa_A485_30min_R1 2 HHEEEIVHHKK 11 1 Q9UII2 Q9UII2 ATPIF1 "ATPase inhibitor, mitochondrial" 0 1 ; HHEEEIVHHK(1)K;HHEEEIVHHK(1)K 147.37 9.87E-05 46922000 37346 41483 24923.9 38200 34651 27201 20990.5 33190 22136.7 50187 FALSE TRUE FALSE 45653.48886 46334.076 34144.28778 40286.76927 31201.02477 28625.2023 16505.7082 25050.10046 26579.33264 37676.30452 1.211729479 1.229793542 0.906253631 1.069286645 0.828133894 0.75976672 0.438092547 0.664876791 0.70546549 1 15.20136984 -5.585597729 0.999565304 0.670985104 1.196993828 0.60244126 0.150860924 0.362510704 0.752039913 0.065193839 0.125909822 2.60E-06 5.585597729 0.526008724 HHEEEIVHHK(ac)K ddPTM_HeLa_A486_30min_R1 2 HHEEEIVHHKK 11 1 Q9UII2 Q9UII2 ATPIF1 "ATPase inhibitor, mitochondrial" 0 1 ; HHEEEIVHHK(1)K;HHEEEIVHHK(1)K 176.8 1.79E-09 55904000 80958 37382 30955 25233 62900 57900 37944 32395 16310.6 43916 FALSE TRUE FALSE 75283.26227 34419.71418 42941.605 58743.69921 55010.49548 50756.88668 28450.00987 25019.36568 17724.41594 32919.14775 2.286914073 1.045583392 1.304456766 1.784484205 1.671078969 1.54186515 0.864238955 0.760024709 0.538422686 1 15.00663937 -6.788356125 4.021673166 0.75054329 1.583451652 0.610933303 0.31909132 0.151044788 5.329863795 0.136249176 0.093640557 1.63E-07 6.788356125 0.832908363 HHEEEIVHHKK ddPTM_HeLa_A485_30min_R1 3 HHEEEIVHHKK 11 1 Q9UII2 Q9UII2 ATPIF1 "ATPase inhibitor, mitochondrial" 0 0 ;; ;; 173.71 9.42E-09 234376000 410024 316317 96364 317759 118564 61759 27886.5 221790 51202.2 384066 FALSE FALSE TRUE 501232.4242 353307.5216 132013.0536 335117.3696 106759.3519 64992.60574 21928.32146 167395.6547 61478.01189 288325.4144 1.738426095 1.22537766 0.457861316 1.162288695 0.370273817 0.225414072 0.076054071 0.58057891 0.213224394 1 18.13733848 -3.658214302 0.658848963 0.388208947 4.040674317 0.6047566 0.326123897 4.159577106 0.774999346 0.138815685 13.63017062 0.000219678 3.658214302 3.65246537 HHFETLTES(ph)PCR ddPTM_HeLa_A485_30min_R1 2 HHFETLTESPCR 12 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 HHFETLTES(1)PCR;HHFETLTES(1)PCR ; 257.81 2.00E-43 947500000 490510 625140 536970 471790 730050 466790 580450 581320 517550 608630 TRUE FALSE FALSE 599622.2573 698244.685 735617.5482 497562.6931 657363.6586 491230.4026 456432.1157 438750.3585 621417.5378 456909.742 1.312342903 1.528189532 1.609984381 1.088973702 1.438716662 1.075114749 0.998954659 0.960256082 1.360044404 1 18.80154968 -5.859097951 1.13681865 1.071161057 1.467337958 0.456076309 0.16865567 0.425875758 1.170305295 0.073986151 0.098926068 1.38E-06 5.859097951 0.396176901 HHFETLTES(ph)PCR ddPTM_HeLa_A486_30min_R1 3 HHFETLTESPCR 12 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 HHFETLTES(1)PCR;HHFETLTES(1)PCR;HHFETLTES(1)PCR ;; 288.45 5.87E-42 2874800000 1279300 1208330 1040690 387019 1276060 1244910 1154800 1197880 925000 1138380 TRUE FALSE FALSE 1189627.676 1112577.53 1443673.039 900999.7909 1116004.656 1091325.662 865856.8258 925148.8735 1005179.745 853322.2384 1.394113059 1.303818745 1.691826339 1.055872858 1.307834961 1.278913888 1.014689161 1.084172932 1.177960329 1 19.70273112 -6.001125739 0.726080936 1.065796974 1.437830431 0.457601915 0.148699196 0.674150678 0.790974622 0.097228772 0.129282502 9.97E-07 6.001125739 0.372033458 HHGPQTLYLPVTLSSIPVFQR ddPTM_HeLa_A485_30min_R1 1 HHGPQTLYLPVTLSSIPVFQR 21 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 85.974 0.00020006 45107000 5240.5 6709.8 5977.1 4044.6 8018.6 5226.4 7343.4 7213.9 5797.8 6558.5 FALSE FALSE TRUE 6406.231145 7494.452742 8188.278018 4265.546257 7220.240029 5500.046222 5774.4226 5444.679714 6961.365279 4923.58665 1.301130984 1.522153112 1.663071781 0.866349383 1.466459421 1.117081228 1.17280816 1.10583607 1.413880932 1 12.26549393 -5.24406113 24.95645667 1.178726249 1.498122065 0.401266317 0.185297082 815.8664847 1171643.128 0.047725015 0.082424947 5.70E-06 5.24406113 0.319395815 HHGPQTLYLPVTLSSIPVFQR ddPTM_HeLa_A486_30min_R1 2 HHGPQTLYLPVTLSSIPVFQR 21 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 166.25 3.23E-17 105454000 61782 65213 56848 14454.7 76500 66440 78470 72958 67734 67186 FALSE FALSE TRUE 57451.40084 60045.28438 78861.06804 33651.2721 66904.65667 58243.30831 58835.97603 56347.05606 73605.23766 50362.18829 1.140764585 1.192269169 1.565878504 0.668185264 1.328470008 1.156488832 1.168256941 1.118836531 1.46151786 1 15.62005335 HHHHDS(ph)DSNS(ph)PCCK ddPTM_HeLa_A485_30min_R1 1 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 HHHHDS(0.973)DS(0.03)NS(0.997)PCCK 117.26 6.71E-05 172400000 64570 58504 36823 109720 41781 55252 77020 54262 70572 115460 TRUE FALSE FALSE 78933.37374 65345.53388 50445.36003 115713.7258 37621.13694 58144.90928 60564.0478 40954.15942 84735.15308 86677.94688 0.91065117 0.753888806 0.581986097 1.334984618 0.434033549 0.670815489 0.698724993 0.472486496 0.977586066 1 16.40337736 -4.263865791 7.328098186 0.748821131 0.912517022 0.020681293 0.259017702 0.420729406 207.0533729 0.062241921 0.349030211 5.45E-05 4.263865791 0.163695891 HHHHDS(ph)DSNSPCCK ddPTM_HeLa_A485_30min_R1 2 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 HHHHDS(0.497)DS(0.497)NS(0.006)PCCK;HHHHDS(0.46)DS(0.46)NS(0.08)PCCK ; 78.486 0.0039193 51538000 36530 41674 32761 43770 29631 36887 49116 34735 41385 65352 TRUE FALSE FALSE 44655.97247 46547.41178 44880.6572 46161.04427 26680.8336 38818.34628 38621.96536 26216.18679 49690.58989 49060.94911 0.910214198 0.948767046 0.914793905 0.940891791 0.54383036 0.791226973 0.787224178 0.534359552 1.012833848 1 15.58228752 HHHHDS(ph)DSNSPCCK ddPTM_HeLa_A486_30min_R1 4 HHHHDSDSNSPCCK 14 0 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 HHHHDS(0.908)DS(0.091)NS(0.001)PCCK;HHHHDS(0.46)DS(0.46)NS(0.079)PCCK;HHHHDS(0.471)DS(0.471)NS(0.057)PCCK;HHHHDS(0.499)DS(0.499)NS(0.002)PCCK ;;; 123.64 2.16E-05 64692900 43725 36245.6 32765.4 5284.6 33249.9 54123 39330.1 35856.3 44000 40522 TRUE FALSE FALSE 40660.1033 33373.36665 45453.04037 12302.81587 29079.3875 47445.85454 29489.29299 27692.60323 47813.95543 30375.02745 1.338603014 1.098710667 1.496395039 0.405030609 0.957345225 1.56200203 0.970840044 0.911689817 1.574120567 1 14.89059809 HHKS(ph)DPYSTGHLR ddPTM_HeLa_A485_30min_R1 1 HHKSDPYSTGHLR 13 1 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 HHKS(0.982)DPY(0.014)S(0.003)T(0.001)GHLR 56.746 0.023185 50879000 10801 10337 4124.2 5097.9 10099 8630.1 13989 16655 10560 13914 TRUE FALSE FALSE 13203.64519 11545.82223 5649.913202 5376.385368 9093.5081 9081.958691 11000.13587 12570.33514 12679.29514 10445.49587 1.264051545 1.105339792 0.540894685 0.514708486 0.870567392 0.869461709 1.053098485 1.203421579 1.21385287 1 13.35059336 -6.851066729 2.740710174 1.155015434 0.838250435 0.251423195 0.218459566 0.395931408 6.010773376 0.11572075 0.073532358 1.41E-07 6.851066729 -0.316764999 HHNHGS(ph)PHLK ddPTM_HeLa_A485_30min_R1 4 HHNHGSPHLK 10 0 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 1 0 HHNHGS(1)PHLK;HHNHGS(1)PHLK;HHNHGS(1)PHLK;HHNHGS(1)PHLK ;;; 128.22 6.40E-05 230664000 197481 279496 158875 491582 204943 176607 413759 195947 268053 561110 TRUE FALSE FALSE 241409.9671 312180.6259 217649.4738 518435.8799 184538.1553 185853.8694 325356.0095 147890.691 321848.7784 421235.6035 0.573099627 0.741106932 0.516692967 1.230750382 0.438087744 0.441211208 0.772384876 0.351087823 0.764058821 1 18.68426785 -8.011408065 24.172117 1.000000042 0.639020169 0.184525342 0.236657816 608.4843151 1289297.453 0.224747085 0.058029448 9.74E-09 8.011408065 -0.360979873 HHNHGS(ph)PHLK ddPTM_HeLa_A486_30min_R1 4 HHNHGSPHLK 10 0 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 1 0 HHNHGS(1)PHLK;HHNHGS(1)PHLK;HHNHGS(1)PHLK;HHNHGS(1)PHLK ;;; 134.21 3.70E-05 186946000 293894 257691 168328 97575 168998 382103 263568 325578 345434 426300 TRUE FALSE FALSE 273293.5483 237270.6267 233509.1096 227159.5312 147800.695 334963.0168 197620.4987 251450.9967 375376.4973 319551.7053 0.855240463 0.742510908 0.730739676 0.710869407 0.462525133 1.048227912 0.618430431 0.786886731 1.174697212 1 18.28568986 -7.685849109 5.982880793 1.084851834 0.736780448 0.465145582 0.147441738 0.159080976 9.313554637 0.101093662 0.036235113 2.06E-08 7.685849109 -0.348071386 HHNS(ph)TAELQK ddPTM_HeLa_A485_30min_R1 4 HHNSTAELQK 10 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 0 HHNS(0.849)T(0.151)AELQK;HHNS(0.98)T(0.02)AELQK;HHNS(0.936)T(0.064)AELQK;HHNS(0.802)T(0.198)AELQK ;;; 183.81 9.28E-10 3082640000 3233130 3423710 1398850 4282660 1806740 2881330 4212920 3134650 2386200 8508400 TRUE FALSE FALSE 3952328.614 3824083.102 1916342.826 4516610.872 1626854.622 3032191.983 3312795.226 2365872.173 2865088.452 6387412.465 0.618768341 0.598690491 0.300018644 0.707111197 0.254696973 0.474713665 0.518644325 0.370396023 0.448552284 1 22.60680018 -10.02714582 5.260928902 1.000004011 0.473501387 0.57416642 0.135134194 347605028 58.25343896 16890.66202 0.031321632 9.39E-11 10.02714582 -0.526502625 HHNS(ph)TAELQK ddPTM_HeLa_A486_30min_R1 1 HHNSTAELQK 10 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 0 HHNS(0.811)T(0.189)AELQK 156.6 1.24E-06 560050000 1069500 766980 711060 308830 844700 1326000 945700 683790 1194100 1790600 TRUE FALSE FALSE 994533.5729 706201.7115 986401.4748 718971.8474 738749.8495 1162411.602 709075.8574 528105.944 1297605.549 1342222.105 0.740960508 0.526143705 0.734901825 0.53565788 0.550393148 0.866035209 0.528285039 0.39345645 0.966759186 1 20.35619199 -7.842761653 8.69205015 0.991635966 0.61255093 0.570418728 0.129803489 0.218735405 20.77701965 0.123538796 0.031965433 1.44E-08 7.842761653 -0.379085036 HHNST(ph)AELQK ddPTM_HeLa_A486_30min_R1 1 HHNSTAELQK 10 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 0 HHNS(0.194)T(0.806)AELQK 156.24 2.31E-06 587490000 910520 683720 617670 278470 777100 1168700 827630 598000 1117600 1640100 TRUE FALSE FALSE 846697.2499 629539.5371 856848.3658 648292.2331 679628.8718 1024517.676 620548.2202 461848.4542 1214474.468 1229408.285 0.688703062 0.512067102 0.696959974 0.527320534 0.552809738 0.833342096 0.50475357 0.37566727 0.987852842 1 20.22953268 -7.782770512 24.94344054 0.993927229 0.59007079 0.646710593 0.120443688 164.3788729 192210.0142 0.115384874 0.029909262 1.65E-08 7.782770512 -0.403856438 HHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSSPVPGS(ph)IGVAGR ddPTM_HeLa_A485_30min_R1 1 HHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSSPVPGSIGVAGR 51 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 HHPQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGT(0.221)HS(0.221)S(0.221)PVPGS(0.338)IGVAGR 107.91 5.25E-09 594750000 61219 106340 95318 80160 106440 97126 94902 111310 75460 109440 TRUE FALSE FALSE 74836.95535 118775.538 130580.0947 84538.93782 95842.45987 102211.3672 74625.41242 84011.04797 90604.12984 82158.62209 0.910883769 1.445685613 1.589365685 1.028972196 1.166553886 1.244073532 0.908308958 1.022546944 1.102795148 1 16.32612437 -6.130050381 1.08931685 1.021236647 1.294282957 0.212752638 0.190330064 0.740434763 1.85135764 0.099379945 0.101830631 7.41E-07 6.130050381 0.27304631 HHPSNKEEEGLANGSAAEPAMPNTYGVEPLPQEVLK(ac)K ddPTM_HeLa_A486_30min_R1 1 HHPSNKEEEGLANGSAAEPAMPNTYGVEPLPQEVLKK 37 2 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 1 HHPSNKEEEGLANGSAAEPAMPNTYGVEPLPQEVLK(1)K 68.619 0.00012899 8032800 4907.3 7889 6052.1 461.22 15808 8908.7 13071 12630 8986.3 3783.6 FALSE TRUE FALSE 4563.323611 7263.846909 8395.635201 1073.743469 13825.21324 7809.635171 9800.497549 9754.424711 9765.239719 2836.161933 1.608978514 2.561153799 2.960210101 0.378590325 4.874620548 2.753592833 3.455549359 3.439304575 3.44311783 1 11.46972419 -5.762191642 24.99999504 3.277349879 2.003440426 0.239207518 1.100889653 28.88065791 959807.1417 0.316207201 0.380154222 1.73E-06 5.762191642 -1.273909453 HHPSS(ph)PLPGSK ddPTM_HeLa_A485_30min_R1 3 HHPSSPLPGSK 11 0 A0A590UJ53;Q9P2N6-6;Q9P2N6-2;Q9P2N6-5;Q9P2N6-4;Q9P2N6-3;Q9P2N6 A0A590UJ53 KANSL3 KAT8 regulatory NSL complex subunit 3 1 0 HHPS(0.174)S(0.826)PLPGSK;HHPS(0.008)S(0.992)PLPGSK;HHPS(0.076)S(0.924)PLPGSK ;; 107.2 0.00039094 357830000 701640 1215770 1059950 361900 1599020 956420 1215170 1397650 1000440 692580 TRUE FALSE FALSE 857717.3974 1357943.726 1452069.613 381669.6806 1439815.954 1006496.672 955539.0025 1054874.146 1201219.131 519932.552 1.649670508 2.611769008 2.792803812 0.73407537 2.769236026 1.935821615 1.837813383 2.028867287 2.31033646 1 18.98796496 -10.75466839 2.640419542 0.756975159 2.080046089 0.234146168 0.582900185 17120054.2 12739887.35 27037565.61 0.140103054 1.76E-11 10.75466839 1.323070931 HHPSS(ph)PLPGSK ddPTM_HeLa_A486_30min_R1 1 HHPSSPLPGSK 11 0 A0A590UJ53;Q9P2N6-6;Q9P2N6-2;Q9P2N6-5;Q9P2N6-4;Q9P2N6-3;Q9P2N6 A0A590UJ53 KANSL3 KAT8 regulatory NSL complex subunit 3 1 0 HHPS(0.149)S(0.851)PLPGSK 67.964 0.01089 126170000 368080 368930 267890 28287 408490 258910 284890 286400 324050 138160 TRUE FALSE FALSE 342279.4928 339694.6432 371624.1823 65853.56555 357253.3752 226968.3166 213607.5087 221192.9721 352138.9149 103563.8367 3.305009775 3.280050777 3.588358582 0.635874139 3.44959579 2.191578873 2.062568513 2.135812838 3.400211174 1 16.66016079 HHTAAFEER ddPTM_HeLa_A485_30min_R1 1 HHTAAFEER 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 128.27 0.00092069 47803000 25386 33318 39273 24294 49547 26306 40338 31058 32707 47586 FALSE FALSE TRUE 31033.02812 37214.25027 53801.71699 25621.1197 44613.92671 27683.34148 31719.45677 23440.9768 39270.99489 35723.68596 0.868696141 1.041724819 1.506051673 0.717202579 1.248861239 0.774929595 0.887911085 0.656174641 1.099298514 1 15.12459332 -6.275735222 24.56295283 0.862439202 1.078477144 0.150090762 0.226628771 1131.399294 1943951.291 0.077179596 0.06839252 5.30E-07 6.275735222 0.216037942 HHVLHDQNVDKR ddPTM_HeLa_A486_30min_R1 1 HHVLHDQNVDKR 12 1 E9PFG7;A0A0D9SFS3;E9PDF2;E9PCR7;Q02218-2;Q02218 E9PFG7 OGDH "2-oxoglutarate dehydrogenase, mitochondrial" 0 0 163.99 1.20E-10 44207000 25353 9571.7 7750.7 12359 20893 17551 10695 8869 3480.6 14766 FALSE FALSE TRUE 23575.88562 8813.203632 10751.97861 28772.37659 18272.40512 15385.73607 8018.99788 6849.722309 3782.30121 11068.49749 2.129998732 0.796242095 0.971403627 2.5994835 1.650847835 1.390047392 0.724488386 0.618848431 0.341717673 1 13.43417177 -6.724555853 3.058339792 0.615624533 1.596258964 0.447472111 0.50489204 0.255638084 4.894972775 0.231236175 0.162401369 1.89E-07 6.724555853 0.980634431 HHYDS(ph)DEKSETR ddPTM_HeLa_A485_30min_R1 5 HHYDSDEKSETR 12 1 Q9BQ39 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 1 0 HHYDS(1)DEKSETR;HHYDS(1)DEKSETR;HHYDS(1)DEKSETR;HHYDS(1)DEKSETR;HHYDS(0.945)DEKS(0.055)ETR ;;;; 236.43 7.02E-28 3011607000 1561820 1740205 1353550 2310290 2058738 1597746 2344645 1956121 1709713 3052266 TRUE FALSE FALSE 1909241.471 1943706.837 1854284.471 2436495.293 1853762.816 1681401.51 1843692.442 1476379.258 2052836.717 2291392.259 0.833223322 0.848264556 0.809239214 1.06332527 0.809011556 0.733790342 0.804616684 0.644315373 0.89589057 1 21.12779302 -5.975092495 24.99995329 0.79042061 0.886999848 0.075702936 0.110150986 436.4919245 438110.0089 0.033009163 0.037427702 1.06E-06 5.975092495 0.096579237 HHYDS(ph)DEKSETR ddPTM_HeLa_A486_30min_R1 6 HHYDSDEKSETR 12 1 Q9BQ39 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 1 0 HHYDS(0.997)DEKS(0.003)ETR;HHYDS(1)DEKSETR;HHYDS(1)DEKSETR;HHYDS(1)DEKSETR;HHYDS(1)DEKSETR;HHYDS(1)DEKSETR ;;;;; 279.29 4.82E-41 3294104000 2902925 2624843 1665643 1354430 2613495 3176841 3782234 3533484 2505984 4183134 TRUE FALSE FALSE 2699444.948 2416840.881 2310624.577 3153181.489 2285686.087 2784914.657 2835879.049 2728986.829 2723204.711 3135650.019 0.86088847 0.770762319 0.736888544 1.005591016 0.728935332 0.888145884 0.904399098 0.870309764 0.868465771 1 21.58033311 -14 0.091685199 1.511501723 0.721813195 0.304301489 0.076408083 252.8624097 1.602463879 24.97409418 1.665793788 1.00E-14 14 -0.789688528 HIADLAGNSEVILPVPAFNVINGGS(ph)HAGNK ddPTM_HeLa_A485_30min_R1 1 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5 P06733 ENO1 Alpha-enolase;Enolase 1 0 HIADLAGNS(0.034)EVILPVPAFNVINGGS(0.966)HAGNK 99.614 0.00025211 246790000 147980 183450 151490 240220 191920 254250 290370 300840 149960 289600 TRUE FALSE FALSE 180897.6405 204902.8817 207532.455 253342.6103 172811.7709 267562.1369 228330.0774 227058.5183 180055.5965 217408.0497 0.832065053 0.942480658 0.954575763 1.165286247 0.794872918 1.230691031 1.050237458 1.044388736 0.828191949 1 17.73004583 -4.426941189 1.615562902 1.019748655 0.801609479 0.16014734 0.125564826 1.291165351 4.184916624 0.034467472 0.401056276 3.74E-05 4.426941189 -0.218139177 HIADLAGNSEVILPVPAFNVINGGS(ph)HAGNK ddPTM_HeLa_A486_30min_R1 1 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5 P06733 ENO1 Alpha-enolase;Enolase 1 0 HIADLAGNS(0.426)EVILPVPAFNVINGGS(0.574)HAGNK 91.583 0.00045989 321510000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 HIADLAGNSEVILPVPAFNVINGGSHAGNK ddPTM_HeLa_A485_30min_R1 3 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;; ;; 188.41 1.11E-33 2137310000 1330560 1595590 1342790 1451840 1767910 1908290 2241530 2666530 1373010 2093020 FALSE FALSE TRUE 1626538.482 1782180.371 1839543.899 1531150.343 1591890.673 2008205.114 1762608.804 2012559.337 1648560.513 1571268.633 1.035175302 1.134230222 1.170738001 0.97446758 1.013124452 1.27807879 1.121774321 1.280849941 1.049190748 1 20.58349842 -6.234916394 24.9727717 1.162019146 1.070146811 0.133370021 0.098002578 1339.880642 1261568.128 0.031608987 0.031598797 5.82E-07 6.234916394 -0.091872335 HIADLAGNSEVILPVPAFNVINGGSHAGNK ddPTM_HeLa_A486_30min_R1 4 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90;A0A2R8YEM5 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;; ;;; 178.91 3.26E-33 1975520000 1046045 1110452 769581 380672 1427919 1137462 1312780 1191180 1005856 1287082 FALSE FALSE TRUE 972722.6473 1022455.739 1067583.373 886223.6541 1248816.084 997133.5033 984308.5588 919974.3173 1093044.408 964788.2897 1.008223936 1.059772128 1.106546778 0.918568005 1.294393907 1.033525711 1.020232697 0.95355046 1.132937059 1 19.87985287 -12.82137147 15.50736513 1.001549337 1.054717948 0 0.100915968 0 0 0 0.022269662 1.51E-13 12.82137147 0.053168611 HIAEDADRK(ac)YEEVAR ddPTM_HeLa_A485_30min_R1 2 HIAEDADRKYEEVAR 15 2 P09493-3;P09493-8;P09493-9;Q6ZN40;P09493-7;A0A0S2Z4G6;P09493-10;P09493-4;P09493-6;P09493-2;P09493;H7BYY1;P09493-5;H0YK48;F5H7S3;B7Z596;H0YKJ4;A0A494BZZ2;H0YKX5;A0A494C0V8;H0YL42 P09493-3 TPM1 Tropomyosin alpha-1 chain 0 1 ; HIAEDADRK(1)YEEVAR;HIAEDADRK(1)YEEVAR 104.95 0.0012753 20738300 10742.8 15272.1 25965 12805.8 35637 15113.7 23057.2 21999.9 18530.5 21935.2 FALSE TRUE FALSE 13132.4988 17058.03925 35570.53399 13505.34843 32088.85515 15905.02996 18130.84086 16604.39003 22249.40138 16467.15833 0.797496358 1.035882385 2.16008939 0.820138372 1.948657717 0.965863669 1.101030336 1.00833366 1.351137879 1 14.007304 HIAEDADRK(ac)YEEVAR ddPTM_HeLa_A486_30min_R1 1 HIAEDADRKYEEVAR 15 2 P09493-3;P09493-8;P09493-9;Q6ZN40;P09493-7;A0A0S2Z4G6;P09493-10;P09493-4;P09493-6;P09493-2;P09493;H7BYY1;P09493-5;H0YK48;F5H7S3;B7Z596;H0YKJ4;A0A494BZZ2;H0YKX5;A0A494C0V8;H0YL42 P09493-3 TPM1 Tropomyosin alpha-1 chain 0 1 HIAEDADRK(1)YEEVAR 73.834 0.02683 5381100 4146.4 3494.3 5565.4 1674.1 8480.2 3535.1 5073.7 5998.9 4376.4 3090.6 FALSE TRUE FALSE 3855.758772 3217.398942 7720.471927 3897.389404 7416.534241 3098.975304 3804.206596 4633.081425 4755.749876 2316.693644 1.664336924 1.388789127 3.332539004 1.682306772 3.201344408 1.337671605 1.642084445 1.999867975 2.052817769 1 11.17785156 HIAEEADR ddPTM_HeLa_A485_30min_R1 5 HIAEEADR 8 0 P67936;A0A2R8Y5V9;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A2R8YGX3;A0A2R8YEU4;A0A5F9UN72;J3KN67;A0A087WWU8;P06753-5;P06753-2;A0A2R2Y2Q3;P06753;A0A494C0P6;P06753-4;P06753-3;P06753-6;P06753-7 P67936;J3KN67 TPM4;TPM3 Tropomyosin alpha-4 chain;Tropomyosin alpha-3 chain 0 0 ;;;; ;;;; 157.91 6.46E-05 4333395000 1411507 1883961 1933998 1521164 1977089 1687384 2075036 2139108 1753765 1971782 FALSE FALSE TRUE 1725491.863 2104273.851 2649464.341 1604261.338 1780243.077 1775732.817 1631687.607 1614488.409 2105729.549 1480253.035 1.165673585 1.421563611 1.789872594 1.08377507 1.202661325 1.199614373 1.102303166 1.090684073 1.422547023 1 20.49741238 -5.308323995 24.99185981 1.162500705 1.455290304 0.381881603 0.175772811 417.636801 222620.5466 0.049210579 0.072991322 4.92E-06 5.308323995 0.292789599 HIAEEADR ddPTM_HeLa_A486_30min_R1 4 HIAEEADR 8 0 P67936;A0A2R8Y5V9;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A2R8YGX3;A0A2R8YEU4;A0A5F9UN72;J3KN67;A0A087WWU8;P06753-5;P06753-2;A0A2R2Y2Q3;P06753;A0A494C0P6;P06753-4;P06753-3;P06753-6;P06753-7 P67936;J3KN67 TPM4;TPM3 Tropomyosin alpha-4 chain;Tropomyosin alpha-3 chain 0 0 ;;; ;;; 144.09 0.0012408 2947529800 1459379.7 1313898.4 1391667.7 578736.2 1747964.2 1471693.1 1464154.5 1537914.6 1425250.1 1560944.2 FALSE FALSE TRUE 1357084.719 1209780.306 1930558.704 1347327.121 1528718.231 1290130.568 1097807.558 1187765.018 1548791.926 1170073.612 1.159828497 1.03393521 1.649946365 1.151489194 1.306514577 1.102606327 0.938238027 1.015119908 1.323670502 1 20.15816787 -6.354738167 5.139020726 1.064713941 1.263018197 0.211865362 0.178144981 0.368260409 15.62137347 0.064498707 0.056677989 4.42E-07 6.354738167 0.198304255 HIAEEADRKYEEVAR ddPTM_HeLa_A485_30min_R1 1 HIAEEADRKYEEVAR 15 2 P67936;A0A2R8Y5V9;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A2R8YGX3;A0A2R8YEU4;A0A5F9UN72;J3KN67;A0A087WWU8;P06753-5;P06753-2;A0A2R2Y2Q3;P06753;A0A494C0P6;P06753-4;P06753-3;P06753-6;P06753-7 P67936;J3KN67 TPM4;TPM3 Tropomyosin alpha-4 chain;Tropomyosin alpha-3 chain 0 0 109.83 0.00019211 120490000 28086 55088 55249 35054 151120 110920 215590 433880 66249 79300 FALSE FALSE TRUE 34333.6338 61530.0624 75687.9042 36968.91126 136073.9622 116727.5997 169527.4353 327470.2497 79544.56663 59531.96941 0.576725987 1.033563361 1.271382502 0.62099258 2.285729223 1.960754883 2.847670537 5.500746119 1.33616555 1 15.861377 -6.108536708 1.461336605 2.959696575 0.893849781 0.279279626 1.189883801 0.448264201 1.938100956 0.496970904 0.508445993 7.79E-07 6.108536708 -2.065846794 HIALS(ph)PR ddPTM_HeLa_A485_30min_R1 4 HIALSPR 7 0 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HIALS(1)PR;HIALS(1)PR;HIALS(1)PR;HIALS(1)PR ;;; 78.655 0.010122 1234520000 339980 442383 430408 347690 541800 422070 501673 585260 386920 474055 TRUE FALSE FALSE 415607.3781 494115.8436 589633.83 366683.4243 487856.4896 444168.9326 394486.4653 441724.0673 464571.295 355881.8128 1.167824157 1.388426792 1.656824847 1.030351682 1.370838498 1.248079886 1.108476047 1.241210007 1.305408926 1 18.44103868 -5.276437897 24.97157768 1.203404162 1.402765453 0.287636439 0.15561023 1050.590696 1749164.575 0.043321747 0.064528664 5.29E-06 5.276437897 0.199361292 HIALS(ph)PR ddPTM_HeLa_A486_30min_R1 3 HIALSPR 7 0 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HIALS(1)PR;HIALS(1)PR;HIALS(1)PR ;; 88.681 0.0043798 416640000 288093 299514 276260 99650 348902 273321 319066 328966 270110 315984 TRUE FALSE FALSE 267899.1684 275779.4198 383235.2705 231990.236 305139.4578 239601.4339 239232.3121 254067.6231 293523.3523 236859.5497 1.131046516 1.164316238 1.617985304 0.97944219 1.288271713 1.011575992 1.010017592 1.072650959 1.239229546 1 17.85367231 HIDFSLR ddPTM_HeLa_A485_30min_R1 6 HIDFSLR 7 0 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 ;;;;; ;;;;; 138.33 0.0011074 1287480000 134066 184361 195873 138693 225308 181664 221821 247208 163348 203756 FALSE FALSE TRUE 163888.5192 205920.4152 268334.5737 146269.4474 202875.5444 191175.6461 174427.1312 186579.8504 196130.4453 152963.3791 1.07142324 1.346207285 1.754240625 0.956238338 1.326301404 1.249813173 1.140319548 1.219768101 1.282205234 1 17.22282677 -5.290971806 24.99990372 1.185839191 1.386182448 0.220783687 0.189663658 1131.007159 957422.2511 0.053138774 0.07883036 5.12E-06 5.290971806 0.200343258 HIDFSLR ddPTM_HeLa_A486_30min_R1 3 HIDFSLR 7 0 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 ;; ;; 138.33 0.00091289 407275000 84905 88234 74573 31683.4 119549 77202 99961 88986 80717 99317 FALSE FALSE TRUE 78953.59795 81242.0165 103449.6627 73760.55639 104554.0497 67677.60217 74949.70052 68725.83035 87713.61455 74447.37675 1.060528945 1.091267685 1.389567601 0.990774418 1.404402065 0.909066311 1.006747367 0.923146434 1.178196175 1 16.18393339 -6.293078331 24.9961356 0.998835169 1.182290761 0.298491997 0.140750984 849.1483939 670861.2257 0.047228625 0.041655528 5.09E-07 6.293078331 0.183455593 HIDSAHLYNNEEQVGLAIR ddPTM_HeLa_A485_30min_R1 2 HIDSAHLYNNEEQVGLAIR 19 0 Q04828;A6NHU4;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 Q04828;A0A0A0MSS8 AKR1C1;AKR1C3 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C3 0 0 ; ; 184.01 2.51E-18 152034000 72284 107931 118709 49183 120703 106438 134278 146302 92458 109620 FALSE FALSE TRUE 88363.32642 120552.5916 162624.399 51869.74275 108685.3855 112010.9291 105588.4083 110421.2051 111013.4725 82293.75141 1.073754992 1.464905774 1.976145166 0.630299894 1.320700341 1.361110986 1.283067141 1.34179331 1.348990302 1 16.32849527 -10.92718838 2.295754573 0.784252474 1.317068428 0.080513866 0.3149333 21863131.27 9857314.303 25292345.79 0.078843924 1.18E-11 10.92718838 0.532815954 HIDSAHLYNNEEQVGLAIR ddPTM_HeLa_A486_30min_R1 2 HIDSAHLYNNEEQVGLAIR 19 0 Q04828;A6NHU4;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 Q04828;A0A0A0MSS8 AKR1C1;AKR1C3 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C3 0 0 ; ; 185.33 2.16E-18 76878000 58661 62565 60939 5341.3 74696 56171 63661 58030 68210 48543 FALSE FALSE TRUE 54549.16683 57607.12154 84536.2128 12434.81633 65326.93117 49241.19312 47732.34446 44817.83579 74122.49772 36387.51684 1.499117598 1.583156163 2.323220163 0.341733029 1.795311603 1.353244118 1.311778011 1.231681623 2.037030943 1 15.15115598 -5.182698961 24.99999996 1.329222664 1.779960029 0.191924537 0.4716884 204.0557581 64785.65112 0.122872032 0.212820656 6.57E-06 5.182698961 0.450737365 HIEDTGS(ph)TPS(ph)IGENDLK ddPTM_HeLa_A486_30min_R1 1 HIEDTGSTPSIGENDLK 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 2 0 HIEDT(0.005)GS(0.748)T(0.248)PS(0.999)IGENDLK 146.25 6.53E-08 126570000 285770 272970 135730 109140 215490 256310 295320 292080 184100 360890 TRUE FALSE FALSE 265738.9987 251338.8631 188288.291 254083.4356 188461.2348 224689.0782 221427.8124 225579.7601 200057.9362 270520.795 0.982323739 0.929092579 0.696021505 0.939238093 0.696660805 0.83057969 0.818524182 0.833872162 0.739528864 1 18.04537997 -4.545368095 20.51252641 0.813575127 0.969016186 0.266982378 0.091879696 28.51390541 26007.41166 0.021204046 0.056132681 2.85E-05 4.545368095 0.155441059 HIEDTGST(ph)PS(ph)IGENDLK ddPTM_HeLa_A485_30min_R1 1 HIEDTGSTPSIGENDLK 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 2 0 HIEDT(0.069)GS(0.445)T(0.493)PS(0.993)IGENDLK 64.295 0.025686 174110000 210050 220100 139370 266750 220500 171840 330440 296150 160340 343120 TRUE FALSE FALSE 256774.8978 245838.7804 190928.7627 281321.8771 198546.2458 180837.2767 259838.7946 223518.7482 192518.7673 257586.4987 0.996849211 0.954393113 0.741221934 1.092145274 0.770794459 0.702044857 1.008743843 0.867742484 0.747394636 1 17.97469745 -4.541236006 24.61842009 0.864244927 0.986235295 0.11360438 0.12458063 351.4110664 471266.805 0.030966719 0.08196167 2.88E-05 4.541236006 0.121990367 HIEIFTDLSSR ddPTM_HeLa_A485_30min_R1 2 HIEIFTDLSSR 11 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 ; ; 190.15 5.23E-10 58238000 53140 70566 78599 69371 103776 63062 76301 75919 84266 95990 FALSE FALSE TRUE 64960.80967 78818.07986 107676.0409 73160.56207 93443.69706 66363.82881 59998.66803 57299.74621 101177.4133 72061.45957 0.901463973 1.093761913 1.49422509 1.015252293 1.296722237 0.920933731 0.832604119 0.795151064 1.404043352 1 16.13694025 -6.27699818 24.66354078 0.967871989 1.167084217 0.129722742 0.215504334 1292.515157 2048865.834 0.07588787 0.067168383 5.28E-07 6.27699818 0.199212228 HIEIFTDLSSR ddPTM_HeLa_A486_30min_R1 1 HIEIFTDLSSR 11 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 98.156 0.0038963 20001000 17143 20408 21019 5933.2 23314 15244 17182 19708 14473 14833 FALSE FALSE TRUE 15941.36423 18790.79576 29158.11971 13812.78945 20389.74073 13363.35027 12882.88187 15220.91862 15727.53129 11118.72025 1.433740922 1.690014258 2.622434871 1.242300295 1.833820823 1.20187845 1.158665887 1.368945191 1.414509128 1 13.44070313 -6.043444658 1.565286796 1.244340142 1.83650617 0.340123185 0.359445483 0.45761435 2.272849521 0.145873541 0.156733778 9.05E-07 6.043444658 0.592166028 HIELGVT(ph)GGGSPENGDGALLAITPPAVK ddPTM_HeLa_A485_30min_R1 2 HIELGVTGGGSPENGDGALLAITPPAVK 28 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 HIELGVT(0.5)GGGS(0.5)PENGDGALLAITPPAVK;HIELGVT(0.5)GGGS(0.5)PENGDGALLAITPPAVK ; 111.58 0.00034037 110684000 86554 92630 78025 117017 114662 100169 119389 118817 88820 152165 TRUE FALSE FALSE 105807.6387 103462.2727 106889.6944 123409.3424 103245.8487 105413.6939 93880.56483 89676.94445 106645.3593 114233.0659 0.926243534 0.905712124 0.935715885 1.080329425 0.903817541 0.922794929 0.821833539 0.785034909 0.933576968 1 16.80162079 -6.339854677 2.542331209 0.869310296 0.956235165 0.130340535 0.072762752 0.458466542 5.809835515 0.028642818 0.025180371 4.57E-07 6.339854677 0.086924869 HIELGVT(ph)GGGSPENGDGALLAITPPAVK ddPTM_HeLa_A486_30min_R1 1 HIELGVTGGGSPENGDGALLAITPPAVK 28 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 HIELGVT(0.5)GGGS(0.5)PENGDGALLAITPPAVK 89.266 0.0034381 105240000 104250 98620 64422 43522 102430 108980 118520 116110 110120 150000 TRUE FALSE FALSE 96942.61335 90804.99203 89367.92368 101321.4155 89582.27428 95535.15563 88865.04242 89674.28766 119665.2903 112439.0237 0.86217943 0.80759321 0.794812342 0.901123224 0.796718713 0.84966191 0.790339862 0.797537054 1.064268315 1 16.77878331 -7.76060193 24.99999999 1.03213423 0.824671538 0.832412312 0.037176607 7.646509978 228328.6374 0.027822152 0.00910133 1.74E-08 7.76060193 -0.207462692 HIEPELAGRDS(ph)PIR ddPTM_HeLa_A485_30min_R1 6 HIEPELAGRDSPIR 14 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR ;;;;; 203.17 3.38E-22 5558640000 2146426 2996486 2658252 2124135 2458190 2289890 2628419 2461308 2263831 2461602 TRUE FALSE FALSE 2623891.059 3346898.972 3641650.034 2240171.116 2213443.972 2409785.1 2066835.808 1857668.354 2718161.117 1847969.924 1.419877577 1.811121993 1.970621917 1.212233537 1.197770561 1.304017489 1.118435848 1.005248154 1.470890344 1 20.81750985 -5.280669326 22.22606183 1.189635613 1.741598521 0.656485611 0.181268785 108.7589929 125703.9094 0.050281889 0.074788947 5.24E-06 5.280669326 0.551962908 HIEPELAGRDS(ph)PIR ddPTM_HeLa_A486_30min_R1 4 HIEPELAGRDSPIR 14 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR ;;; 225.54 3.21E-28 4970140000 2271720 2364750 1676250 606317 1796810 1821710 1912510 1840930 1849140 2356230 TRUE FALSE FALSE 2112484.159 2177358.598 2325338.892 1411536.618 1571437.335 1596965.942 1433979.77 1421790.426 2009424.944 1766214.672 1.196051756 1.232782534 1.3165664 0.79918746 0.889720463 0.904174316 0.811894382 0.804992988 1.137701422 1 20.75222927 -5.258969366 24.99997895 0.893908132 1.246898475 0.705053109 0.101022794 112.0219984 1133812.601 0.027299907 0.044622261 5.51E-06 5.258969366 0.352990343 HIEPELAGRDS(ph)PIRAEMPGNLQHYGR ddPTM_HeLa_A485_30min_R1 5 HIEPELAGRDSPIRAEMPGNLQHYGR 26 2 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR ;;;; 258.02 1.91E-62 7430160000 739838 1051053 1200653 898736 1712380 1116842 1526868 1903610 1156015 1309104 TRUE FALSE FALSE 904412.4107 1173964.505 1644824.508 947831.672 1541889.435 1175318.12 1200640.178 1436746.663 1388016.607 982768.4651 0.920270077 1.194548408 1.673664313 0.964450637 1.56892441 1.195925757 1.221691803 1.4619381 1.412353628 1 19.90649204 -4.361153997 4.034369377 1.323815105 0.918027675 0.223709897 0.217742229 0.291700775 7.576069782 0.050906984 0.264549368 4.35E-05 4.361153997 -0.405787431 HIEPELAGRDS(ph)PIRAEMPGNLQHYGR ddPTM_HeLa_A486_30min_R1 6 HIEPELAGRDSPIRAEMPGNLQHYGR 26 2 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR ;;;;; 281.11 2.35E-76 8005930000 1319239 1277061 1484456 684423 2073129 1372608 1847045 2032017 1124890 1463097 TRUE FALSE FALSE 1226767.159 1175862.035 2059277.118 1593371.333 1813097.83 1203269.581 1384894.805 1569371.088 1222396.371 1096727.988 1.118570121 1.072154671 1.877655299 1.452840951 1.653188256 1.097144956 1.262751402 1.430957452 1.114584823 1 20.06477432 -6.277360485 24.84957154 1.213126553 1.440326616 0.207650926 0.243782484 1489.18438 2324302.803 0.090223319 0.079826462 5.28E-07 6.277360485 0.227200064 HIFCYLYSCFQR ddPTM_HeLa_A485_30min_R1 2 HIFCYLYSCFQR 12 0 Q14139;Q14139-2 Q14139 UBE4A Ubiquitin conjugation factor E4 A 0 0 ; ; 167.18 1.79E-06 83445000 45303 52863 58764 43839 74398 39041 64833 62794 41089 60488 FALSE FALSE TRUE 55380.49606 59044.868 80503.24897 46233.81356 66990.67389 41085.12639 50980.89991 47393.67304 49335.18541 45409.4548 1.219580731 1.300276964 1.772830115 1.018153901 1.475258274 0.904770308 1.122693504 1.043696148 1.086451833 1 15.47070509 -6.259447462 24.99980668 1.039951562 1.358308943 0.428848024 0.187807428 182.0047435 2284278.241 0.062230715 0.059285704 5.50E-07 6.259447462 0.318357381 HIFCYLYSCFQR ddPTM_HeLa_A486_30min_R1 2 HIFCYLYSCFQR 12 0 Q14139;Q14139-2 Q14139 UBE4A Ubiquitin conjugation factor E4 A 0 0 ; ; 202.03 1.56E-14 83153000 48209 65743 54588 21660.2 82156 53922 70720 73450 54780 62689 FALSE FALSE TRUE 44829.79805 60533.28525 75725.93552 50426.04025 71851.22841 47269.65188 53025.108 56727.0384 59528.37451 46991.26636 0.954002765 1.288181612 1.611489568 1.073093878 1.529033669 1.005924197 1.128403469 1.207182585 1.266796558 1 15.52010503 -6.287727079 24.98052366 1.135031676 1.296676164 0.157679707 0.194447363 1550.597109 1473486.935 0.06779444 0.059808149 5.16E-07 6.287727079 0.161644487 HIGISFTPK ddPTM_HeLa_A485_30min_R1 2 HIGISFTPK 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 0 0 ; ; 134.48 0.00032559 69994000 27876.5 37340.1 29505.3 25640 45090 32320.8 44379 53097 32258.4 42330 FALSE FALSE TRUE 34077.53125 41706.69988 40420.53829 27040.64828 40600.68128 34013.06711 34897.06411 40074.8775 38732.36499 31777.91003 1.072365402 1.312443136 1.271969688 0.85092595 1.277638499 1.070336818 1.09815479 1.261092295 1.218845574 1 14.95573662 HIGISFTPK ddPTM_HeLa_A486_30min_R1 2 HIGISFTPK 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 0 0 ; ; 99.136 0.0047783 45737000 23611 21903 16680.8 3600.7 22949 20999 24591 26068 18735.4 21329 FALSE FALSE TRUE 21955.99083 20167.32651 23140.05249 8382.611569 20070.52243 18408.35688 18438.0717 20132.88546 20359.39956 15988.07957 1.373272552 1.261397682 1.447331581 0.524303843 1.255342916 1.151380114 1.153238675 1.259243511 1.273411198 1 13.96470904 HIGLVYSGMGPDYR ddPTM_HeLa_A485_30min_R1 1 HIGLVYSGMGPDYR 14 0 P25787;A0A024RA52 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 0 0 72.681 0.019063 18793000 39835 34991 40439 51018 67385 46069 72107 65218 41559 73658 FALSE FALSE TRUE 48696.15832 39082.89307 55399.06891 53804.98416 60675.9128 48481.1016 56700.75039 49223.18324 49899.5101 55296.41618 0.880638596 0.706788898 1.001856408 0.973028414 1.097284725 0.876749434 1.025396478 0.890169502 0.902400437 1 15.75489836 -4.772685437 24.99996809 0.970117329 0.793713736 0.472973352 0.074794949 156.0809668 346969.6932 0.019112166 0.040366749 1.69E-05 4.772685437 -0.176403592 HIISATSLST(ph)SPTELGSR ddPTM_HeLa_A485_30min_R1 2 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 HIISATS(0.002)LS(0.005)T(0.782)S(0.21)PTELGSR;HIISATSLS(0.001)T(0.997)S(0.002)PTELGSR ; 371.31 6.36E-129 1107710000 339010 479660 441420 298580 572840 407820 506620 566900 380440 448890 TRUE FALSE FALSE 414421.6049 535752.0645 604719.627 314890.6694 515806.0382 429172.8246 398376.4983 427866.8861 456790.8184 336989.9842 1.22977425 1.589815987 1.794473591 0.934421449 1.530627207 1.273547716 1.182161242 1.269672412 1.355502655 1 18.36234619 -11.45689709 0.063802271 2.03E-08 1.965513567 0.219436506 0.221101902 302.7277048 2.385562691 63.69980741 19.85440282 3.49E-12 11.45689709 1.965513547 HIISATSLST(ph)SPTELGSR ddPTM_HeLa_A486_30min_R1 2 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 HIISATS(0.036)LS(0.026)T(0.909)S(0.028)PTELGSR;HIISATSLS(0.001)T(0.766)S(0.232)PTELGSR ; 282.52 1.10E-68 994690000 702710 711710 609290 101235 770880 599830 706190 692150 634120 581180 TRUE FALSE FALSE 653453.6578 655311.5076 845223.4054 235680.1961 674189.0422 525829.0732 529493.7927 534562.5545 689086.0322 435648.7452 1.499955331 1.50421989 1.940148835 0.540986744 1.547551898 1.207002382 1.215414479 1.227049453 1.581746854 1 18.73280586 -5.214087865 24.99999725 1.21484302 1.633719015 0.333792135 0.29569027 502.6255547 265368.5177 0.076801672 0.133024035 6.11E-06 5.214087865 0.418875996 HIISATSLSTS(ph)PTELGSR ddPTM_HeLa_A485_30min_R1 2 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 HIISATSLS(0.002)T(0.368)S(0.63)PTELGSR;HIISATSLST(0.319)S(0.68)PTELGSR ; 269.9 5.53E-59 4051000000 923860 1266390 1240360 817810 1498910 1142520 1502390 1587020 1119920 1182970 TRUE FALSE FALSE 1129369.47 1414483.294 1699220.78 862484.8895 1349673.257 1202340.581 1181392.103 1197800.857 1344677.671 888077.3499 1.271701693 1.592747855 1.913370248 0.971182172 1.519769936 1.35386921 1.330280637 1.348757354 1.514144766 1 19.76032581 -12.67615821 0.190732306 4.24E-16 1.511006192 0.226756742 0.231760118 119.0867138 1.837684424 47.59562422 0.655823925 2.11E-13 12.67615821 1.511006192 HIISATSLSTS(ph)PTELGSR ddPTM_HeLa_A486_30min_R1 3 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 HIISATSLS(0.001)T(0.319)S(0.68)PTELGSR;HIISATSLS(0.002)T(0.307)S(0.684)PT(0.007)ELGSR;HIISATSLS(0.013)T(0.306)S(0.68)PT(0.001)ELGSR ;; 264.92 3.16E-58 4815300000 1407760 1449370 1224130 255318 1718670 1287340 1442060 1421330 1246770 1307670 TRUE FALSE FALSE 1309083.294 1334516.643 1698145.919 594393.2071 1503098.383 1128521.08 1081241.335 1097724.186 1354841.027 980220.9205 1.335498219 1.361444767 1.732411423 0.606386983 1.533428181 1.151292587 1.103058824 1.119874269 1.382179261 1 19.90274741 -5.214282627 24.99998739 1.149844957 1.46495059 0.288006868 0.249201143 564.178781 299096.5274 0.064410231 0.111561456 6.11E-06 5.214282627 0.315105633 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_HeLa_A485_30min_R1 3 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(1)EEEPCTSTAIAS(1)PEK;HIKEEPLS(0.989)EEEPCT(0.009)S(0.009)T(0.015)AIAS(0.978)PEK;HIKEEPLS(0.997)EEEPCT(0.003)STAIAS(1)PEK ;; 188.49 1.40E-20 3336050000 1008290 722136 586560 2104370 1442110 941930 1893100 1592540 886130 3087840 TRUE FALSE FALSE 1232580.632 806583.5235 803552.9528 2219326.405 1298528.465 991247.9983 1488623.72 1201967.068 1063968.163 2318098.315 0.531720602 0.347950524 0.346643172 0.957390974 0.560169712 0.427612579 0.64217454 0.518514275 0.458983191 1 21.14451032 -11.09211532 2.348327206 1.766057313 0.534527482 0.413970612 0.166904904 20981603.99 6203434.367 85900890.19 0.044342239 8.09E-12 11.09211532 -1.231529831 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_HeLa_A486_30min_R1 6 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(1)EEEPCTSTAIAS(1)PEK;HIKEEPLS(1)EEEPCTSTAIAS(1)PEK;HIKEEPLS(1)EEEPCTSTAIAS(1)PEK;HIKEEPLS(1)EEEPCT(0.002)S(0.003)T(0.001)AIAS(0.995)PEK;HIKEEPLS(0.96)EEEPCT(0.035)S(0.002)T(0.004)AIAS(1)PEK;HIKEEPLS(0.851)EEEPCT(0.057)S(0.061)T(0.065)AIAS(0.966)PEK ;;;;; 195.08 1.30E-21 4772890000 2059280 2109720 1008070 1669935 2278100 2708920 4027460 3578950 1805290 3807620 TRUE FALSE FALSE 1914935.106 1942538.104 1398421.701 3887693.074 1992359.456 2374720.993 3019746.91 2764101.213 1961773.991 2854167.169 0.670926051 0.680597172 0.489957882 1.362111202 0.698052825 0.832018888 1.05801333 0.96844405 0.687336752 1 21.44463841 -5.194109484 24.99995536 0.932276536 0.620503915 0.390826612 0.188299491 196.5567839 72981.8389 0.049642095 0.085982625 6.40E-06 5.194109484 -0.311772622 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_A485_30min_R1 2 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(1)EEEPCTSTAIAS(1)PEKK;HIKEEPLS(1)EEEPCTSTAIAS(1)PEKK ; 151.23 1.36E-09 1948230000 1194010 650850 366630 3204800 1487080 1042330 2550310 2058020 845210 4715300 TRUE FALSE FALSE 1459613.405 726961.2459 502261.6937 3379870.109 1339021.094 1096904.787 2005415.434 1553287.368 1014835.894 3539862.489 0.412336188 0.205364262 0.141887346 0.954802657 0.37826924 0.309872146 0.566523542 0.438798788 0.286687943 1 21.75526189 -11.20215449 2.297448256 2.707359181 0.414092477 0.403459117 0.215001498 27312547.4 5232989.866 242528399 0.054491836 6.28E-12 11.20215449 -2.293266704 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_A486_30min_R1 3 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(1)EEEPCTSTAIAS(1)PEKK;HIKEEPLS(1)EEEPCTSTAIAS(1)PEKK;HIKEEPLS(0.988)EEEPCT(0.009)S(0.003)T(0.001)AIAS(1)PEKK ;; 183.98 1.19E-20 2061710000 988267 854514 267416 1233150 813668 1535580 2450940 2074550 732460 2665140 TRUE FALSE FALSE 918994.5867 786799.1986 370966.6368 2870835.52 711610.1723 1346135.752 1837688.889 1602220.252 795950.2225 1997771.597 0.460009837 0.393838415 0.185690215 1.437018889 0.356201967 0.673818646 0.919869364 0.80200372 0.39841903 1 20.92996022 HIKEEPLS(ph)EEEPCTSTAIASPEK ddPTM_HeLa_A485_30min_R1 5 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(1)EEEPCTSTAIASPEK;HIKEEPLS(0.99)EEEPCT(0.007)S(0.001)T(0.001)AIASPEK;HIKEEPLS(0.634)EEEPCT(0.345)S(0.013)T(0.008)AIASPEK;HIKEEPLS(0.972)EEEPCT(0.02)S(0.004)T(0.004)AIASPEK;HIKEEPLS(0.687)EEEPCT(0.242)S(0.039)T(0.032)AIASPEK ;;;; 226.28 1.46E-38 7017620000 3035080 2279540 1863000 5621260 4518640 3058250 5471000 5116440 3057370 7731220 TRUE FALSE FALSE 3710223.075 2546112.374 2552201.226 5928335.2 4068748.336 3218375.241 4302076.156 3861625.068 3670956.115 5803969.137 0.639256169 0.438684685 0.439733769 1.021427761 0.701028596 0.554512811 0.741230019 0.665342109 0.632490633 1 22.46860842 -14 0.151258273 2.202005185 0.546408825 0.318598514 0.156380505 178.6562908 1.596611883 65.10899335 0.827201472 1.00E-14 14 -1.65559636 HIKEEPLS(ph)EEEPCTSTAIASPEK ddPTM_HeLa_A486_30min_R1 5 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(0.776)EEEPCT(0.158)S(0.033)T(0.033)AIASPEK;HIKEEPLS(1)EEEPCTSTAIASPEK;HIKEEPLS(0.986)EEEPCT(0.012)S(0.002)TAIASPEK;HIKEEPLS(0.824)EEEPCT(0.175)S(0.001)TAIASPEK;HIKEEPLS(0.697)EEEPCT(0.3)S(0.002)TAIASPEK ;;;; 219.7 2.71E-38 7471160000 2790180 3135930 1535110 1546570 3385670 3903270 5048020 4739570 2685590 4531900 TRUE FALSE FALSE 2594602.791 2887427.486 2129545.704 3600493.119 2961007.698 3421724.233 3784952.003 3660473.375 2918379.104 3397082.742 0.763773799 0.849972669 0.626874841 1.059877958 0.871632493 1.007253721 1.11417716 1.077534359 0.859083904 1 21.69586493 -5.27199712 24.99589841 1.001636527 0.757183656 0.610166052 0.092037011 469.5430185 1111662.199 0.026178968 0.039283816 5.35E-06 5.27199712 -0.24445287 HIKEEPLS(ph)EEEPCTSTAIASPEKK ddPTM_HeLa_A485_30min_R1 2 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(1)EEEPCTSTAIASPEKK;HIKEEPLS(1)EEEPCTSTAIASPEKK ; 156.37 3.24E-10 1834330000 2254000 1466570 1018830 3869500 2904300 2392300 4369800 4301400 1994070 6186400 TRUE FALSE FALSE 2755394.524 1638072.604 1395737.614 4080880.987 2615137.694 2517557.129 3436156.532 3246474.906 2394261.558 4644244.332 0.593292326 0.352710255 0.300530617 0.878696446 0.563092186 0.542081111 0.739874194 0.699031893 0.515533074 1 22.14701244 -13.99999996 0.084241101 2.334173023 0.200052612 0.420905064 0.157131027 233.2412897 1.377860367 57.38661748 4.733790798 1.00E-14 13.99999996 -2.134120411 HIKEEPLS(ph)EEEPCTSTAIASPEKK ddPTM_HeLa_A486_30min_R1 1 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(1)EEEPCTSTAIASPEKK 203.21 6.24E-29 1572200000 333630 277150 106770 203150 302880 358870 581200 504380 223170 531460 TRUE FALSE FALSE 310244.2599 255187.6246 148114.2034 472943.4666 264889.9662 314596.2681 435777.6127 389543.6845 242514.5553 398378.9568 0.778766686 0.640565021 0.371792237 1.1871698 0.664919574 0.789690978 1.093877087 0.97782194 0.608753427 1 18.60378192 -5.254001035 24.99820541 0.895542001 0.601393707 0.34400427 0.193498415 691.1038266 2322602.106 0.052544295 0.088748561 5.57E-06 5.254001035 -0.294148295 HIKEEPLSEEEPCT(ph)STAIAS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(0.135)EEEPCT(0.483)S(0.128)T(0.254)AIAS(1)PEK 204.58 6.26E-29 2115400000 1145700 1104800 502300 996650 1214600 1456400 2204600 1973500 932150 2139900 TRUE FALSE FALSE 1065392.346 1017251.624 696804.0121 2320251.568 1062253.542 1276724.176 1652985.762 1524177.131 1012949.513 1604055.112 0.664186872 0.634174984 0.434401541 1.446491178 0.662230078 0.795935356 1.030504345 0.950202471 0.631492961 1 20.61329228 HILANFK ddPTM_HeLa_A486_30min_R1 1 HILANFK 7 0 J3KPG2;E9PJF7;Q5W0H4;A0A0B4J2C3;P13693-2;P13693;Q56UQ5;H0YCX0 J3KPG2 TPT1 Translationally-controlled tumor protein;TPT1-like protein 0 0 102.98 0.0064502 9873300 8841.3 9085.3 7365.6 3978.8 11487 10901 12791 11387 9844.6 13027 FALSE FALSE TRUE 8221.570527 8365.34774 10217.75758 9262.847477 10046.19335 9556.145453 9590.556511 8794.428676 10697.93785 9764.954408 0.841946637 0.856670435 1.046370229 0.948580719 1.028800845 0.978616495 0.982140429 0.90061134 1.095544066 1 13.25339759 -4.74442994 23.54202473 0.992169346 0.849308201 0.576175555 0.050697877 82.39087884 114029.6174 0.012101711 0.031796087 1.80E-05 4.74442994 -0.142861146 HIMDRT(ph)PEK ddPTM_HeLa_A485_30min_R1 1 HIMDRTPEK 9 1 O75815;O75815-3 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 HIMDRT(1)PEK 115.57 0.00075447 251650000 294410 277100 200400 354100 379790 294140 452110 423200 246950 470630 TRUE FALSE FALSE 359900.4888 309504.4346 274536.2993 373443.5864 341976.7741 309540.7156 355513.0051 319409.5364 296510.5998 353310.6023 1.018651822 0.876012303 0.777039516 1.05698381 0.967921064 0.876114992 1.006233616 0.904047414 0.839234934 1 18.43057752 -10.84184032 2.457483036 1.030871428 0.924443269 0.068769017 0.083131057 36961270.08 22598739.32 6710901.054 0.022585225 1.44E-11 10.84184032 -0.106428159 HIMDRT(ph)PEK ddPTM_HeLa_A486_30min_R1 1 HIMDRTPEK 9 1 O75815;O75815-3 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 HIMDRT(1)PEK 120.53 0.000489 253540000 322420 331040 199670 177740 340140 367590 407880 395360 252550 409220 TRUE FALSE FALSE 299820.023 304807.1848 276987.5713 413787.7025 297476.4695 322240.4832 305824.1099 305345.1586 274441.2373 306748.6484 0.977412694 0.993670832 0.902978946 1.348947109 0.969772715 1.050503351 0.996986006 0.995424626 0.894677902 1 18.22669746 -7.147621663 1.772294164 0.951891042 1.043264787 0.085116654 0.115024167 0.994000478 5.884019866 0.081571934 0.035721824 7.12E-08 7.147621663 0.091373745 HIMGQNVADYMR ddPTM_HeLa_A485_30min_R1 3 HIMGQNVADYMR 12 0 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 0 ;; ;; 133.05 7.68E-05 731100000 430320 617800 599370 497360 740700 576160 750570 791120 553380 710700 FALSE FALSE TRUE 526043.1994 690046.3359 821101.9049 524529.5174 666953.3072 606326.8467 590204.5879 597096.5796 664438.2901 533535.5695 0.985957131 1.293346452 1.538982501 0.983120053 1.250063436 1.136431911 1.106214134 1.11913172 1.245349566 1 19.02522493 -5.300506897 24.9970884 1.130532276 1.274821241 0.179324399 0.148513584 936.25049 599051.5609 0.041561595 0.061646849 5.01E-06 5.300506897 0.144288965 HIMGQNVADYMR ddPTM_HeLa_A486_30min_R1 1 HIMGQNVADYMR 12 0 P46777;A0A2R8Y6J3 P46777 RPL5 60S ribosomal protein L5 0 0 100.93 0.00058668 0 174980 180420 143470 69748 207380 155670 193430 183920 154580 210320 FALSE FALSE TRUE 162714.8056 166122.8621 199025.4263 162376.8689 181368.4667 136465.0181 145031.7681 142045.4309 167979.1189 157654.503 1.032097418 1.053714667 1.262415107 1.029953891 1.150417293 0.865595435 0.919934193 0.900991904 1.065488874 1 17.26640685 -6.25421901 24.85937006 0.942309831 1.107326603 0.472222308 0.081867967 451.1570915 1553313.072 0.027150188 0.026600071 5.57E-07 6.25421901 0.165016772 HIPTALPVSGTLSS(ph)SNPDLLQSHHR ddPTM_HeLa_A486_30min_R1 1 HIPTALPVSGTLSSSNPDLLQSHHR 25 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 HIPTALPVSGTLS(0.011)S(0.617)S(0.369)NPDLLQS(0.003)HHR 258.19 1.10E-61 354330000 171780 167090 183150 8652.5 233800 121610 152520 137410 166330 72343 TRUE FALSE FALSE 159739.1091 153849.1799 254070.5849 20143.45727 204474.6239 106606.9946 114357.8828 106124.7426 180747.6183 54227.84193 2.94570286 2.837088374 4.685242412 0.371459689 3.770657593 1.965908855 2.108840749 1.957015785 3.333114723 1 15.72674614 -5.245025072 24.99948968 2.180142162 3.424118682 0.276465931 1.038645284 1192.308848 1815920.154 0.26678042 0.460343903 5.69E-06 5.245025072 1.24397652 HIPTALPVSGTLSSS(ph)NPDLLQSHHR ddPTM_HeLa_A485_30min_R1 2 HIPTALPVSGTLSSSNPDLLQSHHR 25 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 HIPTALPVSGTLS(0.007)S(0.135)S(0.855)NPDLLQS(0.004)HHR;HIPTALPVSGTLS(0.001)S(0.028)S(0.967)NPDLLQS(0.004)HHR ; 256.75 1.23E-61 1143930000 377350 783690 743480 162274 851350 495020 610370 702270 639330 421610 TRUE FALSE FALSE 461290.2057 875335.7283 1018524.191 171138.6177 766586.6047 520938.4818 479959.4632 530037.1814 767637.6667 316510.3862 1.457425177 2.765582953 3.217980311 0.540704587 2.421995101 1.645881161 1.516409837 1.674628084 2.425315883 1 18.27189332 -5.242785496 24.96391024 1.663904808 2.508854684 0.258383428 0.674778812 1153.923209 1544257.385 0.177322929 0.306452543 5.72E-06 5.242785496 0.844949876 HIPTALPVSGTLSSS(ph)NPDLLQSHHR ddPTM_HeLa_A486_30min_R1 3 HIPTALPVSGTLSSSNPDLLQSHHR 25 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 HIPTALPVSGTLS(0.025)S(0.164)S(0.748)NPDLLQS(0.063)HHR;HIPTALPVSGT(0.004)LS(0.017)S(0.22)S(0.72)NPDLLQS(0.039)HHR;HIPTALPVSGTLS(0.001)S(0.021)S(0.97)NPDLLQS(0.008)HHR ;; 200.99 1.57E-28 1919440000 1068940 1094190 1079260 223517 1408580 917070 1092090 1180370 992430 781752 TRUE FALSE FALSE 994012.826 1007482.399 1497178.376 520358.8719 1231902.762 803931.2275 818837.531 911625.5183 1078454.631 585996.2108 1.69627859 1.719264358 2.554928424 0.887990165 2.102236737 1.371905164 1.397342706 1.555685005 1.840378165 1 19.16053181 -5.260270381 24.99984778 1.495574326 1.963067799 0.269594938 0.401391844 156.6952751 3350998.324 0.106216432 0.171636929 5.49E-06 5.260270381 0.467493473 HIQSNLDFS(ph)PVNSASSEENVK ddPTM_HeLa_A485_30min_R1 1 HIQSNLDFSPVNSASSEENVK 21 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 HIQS(0.015)NLDFS(0.985)PVNSASSEENVK 104.38 1.37E-06 0 186990 179150 162590 222640 240050 188070 256490 241060 209000 325820 TRUE FALSE FALSE 228585.2804 200100.0341 222738.8069 234802.2594 216149.7791 197917.0544 201688.8162 181939.657 250944.3829 244599.0703 0.934530455 0.818073568 0.910628183 0.959947473 0.883690109 0.809148842 0.824569022 0.743828081 1.025941688 1 17.90005939 -7.791339584 24.99996329 1.012971219 0.861976793 0.493623964 0.061736517 211.4650097 176803.3406 0.062993294 0.016273721 1.62E-08 7.791339584 -0.150994425 HIQSNLDFS(ph)PVNSASSEENVK ddPTM_HeLa_A486_30min_R1 1 HIQSNLDFSPVNSASSEENVK 21 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 HIQS(0.442)NLDFS(0.558)PVNSASSEENVK 108.88 6.90E-05 194840000 195990 215540 135420 99048 210410 238370 261650 272500 189390 269250 TRUE FALSE FALSE 182252.1131 198459.8254 187858.2507 230588.7496 184018.4158 208962.333 196182.4025 210457.6986 205806.4777 201828.0475 0.903006868 0.983311427 0.93078367 1.142501018 0.911758391 1.035348335 0.972027451 1.042757443 1.019711979 1 17.62276715 -4.387517725 1.344648617 1.012008785 0.880793436 0.226997653 0.059936583 1.55358449 2.988212809 0.016814572 0.261745787 4.10E-05 4.387517725 -0.131215349 HISQHQK ddPTM_HeLa_A485_30min_R1 1 HISQHQK 7 0 M0QY24;Q86UE3 M0QY24 ZNF546 Zinc finger protein 546 0 0 81.635 0.021666 106990000 198590 161790 211190 304250 417020 185140 324740 279690 228150 443270 FALSE FALSE TRUE 242765.6604 180709.9331 289317.9693 320870.4071 375500.0246 194833.6441 255356.6461 211095.589 273937.6123 332770.9468 0.729527811 0.543046005 0.86942076 0.964238045 1.128403871 0.585488745 0.767364605 0.634357028 0.82320171 1 18.34416996 -11.5903103 1.771022374 3.408082265 0.78316064 0.130461599 0.168233081 4965789.712 239043.7871 47983964.34 0.045498151 2.57E-12 11.5903103 -2.624921625 HISQHQK ddPTM_HeLa_A486_30min_R1 1 HISQHQK 7 0 M0QY24;Q86UE3 M0QY24 ZNF546 Zinc finger protein 546 0 0 68.422 0.035342 118970000 151220 312230 239070 134210 412350 338480 387150 397650 264450 281860 FALSE FALSE TRUE 140620.2589 287487.7577 331644.3065 312447.6626 360629.218 296721.779 290280.9751 307113.7756 287372.7389 211280.4214 0.665562185 1.360692845 1.569687832 1.478829229 1.706874757 1.404397895 1.373913272 1.453583695 1.360148456 1 17.68879956 -4.268180743 4.027262364 1.446257281 0.601365613 0.625380806 0.172689951 0.131856537 4.559929107 0.041240517 0.3222707 5.39E-05 4.268180743 -0.844891668 HITIFSPEGR ddPTM_HeLa_A485_30min_R1 2 HITIFSPEGR 10 0 G3V3U4;G3V3I1;G3V295;G3V5Z7;P60900;G3V4S5;G3V2S7 G3V3U4 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 0 ; ; 136.02 0.00052161 28731000 48745 45116 43951 50028 70523 38411 50221 50056 40197 49340 FALSE FALSE TRUE 59588.15708 50391.92374 60210.30385 52760.90296 63501.4825 40422.14057 39490.87308 37779.68752 48264.16919 37040.44604 1.608732169 1.360456721 1.625528586 1.424413273 1.714382231 1.091297349 1.066155441 1.019957683 1.303012635 1 15.17681385 -6.276312098 24.88227504 1.095461363 1.533940969 0.774693434 0.121409049 347.2526169 580956.8769 0.040354133 0.035733181 5.29E-07 6.276312098 0.438479606 HITIFSPEGR ddPTM_HeLa_A486_30min_R1 2 HITIFSPEGR 10 0 G3V3U4;G3V3I1;G3V295;G3V5Z7;P60900;G3V4S5;G3V2S7 G3V3U4 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 0 ; ; 100.58 0.0035233 20085400 28677 35154 31109 14224.5 43039 30273 34171 27024.3 23304.4 23543.6 FALSE FALSE TRUE 26666.89039 32368.26901 43155.23793 33115.35487 37640.6473 26538.22505 25621.05438 20871.45683 25324.44416 17648.12932 1.511032128 1.834090652 2.445315147 1.87642295 2.132840633 1.503741534 1.451771682 1.182644146 1.434964789 1 14.10722765 -6.528204826 2.178260682 1.264252388 1.976016543 0.624535528 0.253856715 0.216531968 2.065485504 0.11320094 0.087066761 2.96E-07 6.528204826 0.711764155 HITYS(ph)IK ddPTM_HeLa_A485_30min_R1 2 HITYSIK 7 0 E5RJA7;P51512-2;P51512 E5RJA7 MMP16 Matrix metalloproteinase-16 1 0 HITY(0.402)S(0.598)IK;HITY(0.402)S(0.598)IK ; 52.683 0.037194 834640000 197826 406300 566920 36626 525840 183933 101372 81692 145750 29317 TRUE FALSE FALSE 241831.7112 453813.2507 776647.2995 38626.78564 473485.5233 193563.4475 79713.04407 61656.90891 175000.6881 22008.81144 10.98794962 20.61961646 35.28801642 1.755060047 21.51345267 8.794816022 3.621869554 2.801464726 7.951392041 1 14.42579362 -6.267384365 1.027409573 3.263683101 20.03044622 0.394670484 8.205822929 0.535728506 1.190157644 4.610647523 4.157739139 5.40E-07 6.267384365 16.76676312 HIVLSGGSTMYPGLPSR ddPTM_HeLa_A486_30min_R1 1 HIVLSGGSTMYPGLPSR 17 0 P61160;P61160-2;F5H6T1 P61160 ACTR2 Actin-related protein 2 0 0 113.69 9.82E-05 16338000 8773.4 10267 12715 3653 16084 11406 11632 12311 12634 10442 FALSE FALSE TRUE 8158.429966 9453.405528 17638.58852 8504.368612 14066.59474 9998.843688 8721.550569 9508.054047 13729.12529 7827.255234 1.042310455 1.207754857 2.253483244 1.086507129 1.797129942 1.277439331 1.114254015 1.214736681 1.754015281 1 12.93429077 -6.443546955 24.99915986 1.275370821 1.489193897 0.067133006 0.381391786 327.4933335 103197.9544 0.133441304 0.117684131 3.60E-07 6.443546955 0.213823077 HIVSNDS(ph)S(ph)DS(ph)DDESHEPK ddPTM_HeLa_A485_30min_R1 1 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 3 0 HIVS(0.007)NDS(0.993)S(0.999)DS(1)DDESHEPK 121.5 1.94E-05 573820000 251480 353650 276850 619440 410850 210980 531070 433700 307070 803930 TRUE FALSE FALSE 307420.8584 395006.2912 379268.3357 653278.4387 369944.3314 222026.5866 417602.5561 327334.395 368696.1324 603525.0462 0.509375477 0.654498589 0.628421866 1.082437991 0.612972624 0.36788297 0.691939065 0.542370854 0.610904443 1 19.20305412 -10.13489336 3.761055683 1.000200436 0.6377334 0.28648991 0.173433018 442161451 729391529.1 1066871.187 0.045401768 7.33E-11 10.13489336 -0.362467037 HIVSNDS(ph)S(ph)DS(ph)DDESHEPK ddPTM_HeLa_A486_30min_R1 2 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 3 0 HIVSNDS(1)S(1)DS(1)DDESHEPK;HIVS(0.001)NDS(0.999)S(1)DS(1)DDESHEPK ; 165.85 3.27E-12 1814710000 1213070 1614570 832800 887580 1341860 1377010 2225070 1977440 1425150 2894110 TRUE FALSE FALSE 1128040.057 1486625.593 1155282.463 2066331.096 1173551.406 1207128.507 1668333.952 1527220.079 1548683.149 2169406.019 0.519976458 0.685268493 0.532533999 0.95248703 0.540955172 0.556432727 0.769027991 0.703980751 0.713874275 1 21.04886866 -14 0.181520832 2.393520691 0.597886992 0.426495275 0.123334369 133.5116712 1.288393512 66.88535448 0.374620064 1.00E-14 14 -1.7956337 HIVSNDS(ph)SDS(ph)DDESHEPK ddPTM_HeLa_A485_30min_R1 2 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 2 0 HIVSNDS(0.989)S(0.011)DS(1)DDESHEPK;HIVS(0.121)NDS(0.679)S(0.216)DS(0.983)DDES(0.002)HEPK ; 239.02 2.68E-45 2977370000 1022680 1361800 1087770 2597340 1669870 892120 2264670 1801150 1298950 3280660 TRUE FALSE FALSE 1250171.638 1521050.664 1490181.389 2739226.107 1503611.88 938830.0237 1780804.754 1359415.138 1559637.35 2462851.838 0.507611387 0.617597307 0.605063352 1.112217172 0.610516579 0.381196306 0.723066133 0.551967892 0.633264789 1 21.23189841 -10.26174367 3.640789514 1.000733249 0.642033162 0.266035549 0.180247118 198451992.9 334728678.6 1639495.272 0.045971222 5.47E-11 10.26174367 -0.358700087 HIVSNDS(ph)SDS(ph)DDESHEPK ddPTM_HeLa_A486_30min_R1 1 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 2 0 HIVSNDS(0.953)S(0.047)DS(1)DDESHEPK 284.88 1.42E-69 2332600000 1103600 1289100 653250 510300 989920 1063000 1544900 1440300 1124800 2258200 TRUE FALSE FALSE 1026243.339 1186947.021 906205.8946 1188004.189 865755.003 931857.8678 1158349.68 1112375.132 1222298.57 1692732.022 0.606264504 0.701201966 0.535351067 0.701826499 0.51145426 0.550505252 0.684307773 0.657147804 0.722086281 1 20.69092217 -8.373441654 0.933507944 1.000808451 0.608007592 0.772532175 0.063180688 0.572821313 0.871564738 0.061040937 0.02010874 4.23E-09 8.373441654 -0.392800859 HIVSNDSS(ph)DS(ph)DDESHEPK ddPTM_HeLa_A485_30min_R1 1 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 2 0 HIVSNDS(0.097)S(0.903)DS(1)DDESHEPK 128.01 9.72E-06 2368800000 411270 598500 448160 979790 611450 308760 834810 684560 479920 1182400 TRUE FALSE FALSE 502755.5926 668489.3687 613953.0335 1033313.447 550571.8911 324926.1962 656446.0237 516670.5867 576235.5419 887649.4405 0.566389804 0.753100648 0.691661601 1.164100826 0.620258253 0.366052387 0.739532966 0.582066031 0.649170174 1 19.7596305 -10.4173717 3.233678312 1.004099058 0.68569914 0.198133778 0.192122417 244820644.6 318058487.9 9233998.116 0.05207836 3.82E-11 10.4173717 -0.318399918 HIVSNDSS(ph)DS(ph)DDESHEPK ddPTM_HeLa_A486_30min_R1 3 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 2 0 HIVSNDS(0.011)S(0.989)DS(1)DDESHEPK;HIVSNDS(0.436)S(0.564)DS(0.998)DDES(0.002)HEPK;HIVS(0.003)NDS(0.447)S(0.55)DS(1)DDESHEPK ;; 240.37 2.41E-45 2791970000 1967140 2546360 1312950 972690 2038510 2253230 3240040 2967960 2230500 4304280 TRUE FALSE FALSE 1829253.644 2344577.16 1821359.402 2264471.477 1782821.067 1975249.392 2429347.722 2292220.298 2423841.536 3226460.272 0.566953717 0.726671635 0.564506998 0.701843905 0.552562535 0.612203227 0.752945184 0.710444297 0.751238612 1 21.62152083 -8.398005806 0.55408563 1.012060925 0.621509248 0.766380165 0.061403619 0.713891441 0.426037425 0.079326009 0.028365732 4.00E-09 8.398005806 -0.390551676 HIVSNDSSDS(ph)DDESHEPK ddPTM_HeLa_A485_30min_R1 8 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVSNDS(0.001)S(0.009)DS(0.99)DDESHEPK;HIVSNDSSDS(1)DDESHEPK;HIVSNDSSDS(1)DDESHEPK;HIVSNDSS(0.001)DS(0.999)DDESHEPK;HIVSNDS(0.004)S(0.002)DS(0.994)DDESHEPK;HIVSNDS(0.04)S(0.033)DS(0.927)DDESHEPK;HIVSNDSS(0.001)DS(0.998)DDESHEPK;HIVSNDSSDS(1)DDESHEPK ;;;;;;; 323.22 6.10E-90 26541990000 3790890 4960350 3929813 8024670 5677780 3359530 7241230 5948870 4410610 10644670 TRUE FALSE FALSE 4634160.402 5540419.783 5383614.362 8463037.403 5112480.287 3535429.796 5694082.055 4489900.305 5295778.97 7991149.67 0.579911601 0.693319486 0.6736971 1.059051295 0.639767805 0.442418168 0.712548543 0.561859118 0.662705517 1 22.92997164 -10.00928563 4.858732897 1.00000409 0.672308748 0.302661117 0.150455835 40410485.56 83248064.55 1319.7387 0.038256651 9.79E-11 10.00928563 -0.327695342 HIVSNDSSDS(ph)DDESHEPK ddPTM_HeLa_A486_30min_R1 9 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVSNDSSDS(1)DDESHEPK;HIVSNDSSDS(1)DDESHEPK;HIVSNDSS(0.003)DS(0.997)DDESHEPK;HIVSNDSS(0.033)DS(0.963)DDES(0.004)HEPK;HIVSNDSS(0.002)DS(0.998)DDESHEPK;HIVSNDSSDS(1)DDESHEPK;HIVSNDSS(0.001)DS(0.999)DDESHEPK;HIVSNDSS(0.053)DS(0.947)DDESHEPK;HIVSNDS(0.027)S(0.054)DS(0.919)DDESHEPK ;;;;;;;; 328.95 1.38E-101 28574510000 7954390 9137220 4380116 2550580 6960920 7897040 10348870 9584790 7514760 14268110 TRUE FALSE FALSE 7396828.338 8413153.41 6076214.219 5937879.139 6087816.506 6922783.496 7759473.267 7402542.551 8166145.447 10695282.39 0.691597292 0.78662284 0.568120971 0.555186757 0.569205776 0.647274494 0.725504291 0.692131566 0.763527802 1 23.35047124 -8.304207795 0.801179923 1.001386796 0.637697452 0.712766592 0.067912976 0.656863235 0.818796468 0.075835637 0.026593079 4.96E-09 8.304207795 -0.363689344 HIVSNDSSDS(ph)DDESHEPKGTENEDAGSDYQSDNQASWIHR ddPTM_HeLa_A485_30min_R1 3 HIVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHR 40 1 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVS(0.012)NDS(0.185)S(0.143)DS(0.652)DDES(0.007)HEPKGTENEDAGSDYQSDNQASWIHR;HIVSNDSS(0.003)DS(0.996)DDESHEPKGTENEDAGSDYQSDNQASWIHR;HIVSNDSSDS(0.998)DDES(0.001)HEPKGTENEDAGSDYQSDNQASWIHR ;; 351.49 1.76E-150 12020400000 916395 1626430 1335140 1332900 2440140 1393380 3624400 4311470 1636840 2398710 TRUE FALSE FALSE 1120243.906 1816626.84 1829063.846 1405712.952 2197191.094 1466335.222 2850017.331 3254075.222 1965338.774 1800755.742 0.622096534 1.008813576 1.015720124 0.78062389 1.220149431 0.814288794 1.582678464 1.807060861 1.091396644 1 20.78017107 -6.759277272 24.99976178 1.437539099 0.927744699 0.411908414 0.26393504 50.29948423 581607.4133 0.100838888 0.074202985 1.74E-07 6.759277272 -0.5097944 HIVSNDSSDS(ph)DDESHEPKGTENEDAGSDYQSDNQASWIHR ddPTM_HeLa_A486_30min_R1 3 HIVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHR 40 1 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVSNDS(0.007)S(0.02)DS(0.973)DDESHEPKGTENEDAGSDYQSDNQASWIHR;HIVSNDSSDS(0.97)DDES(0.03)HEPKGTENEDAGSDYQSDNQASWIHR;HIVSNDSS(0.008)DS(0.991)DDESHEPKGTENEDAGSDYQSDNQASWIHR ;; 234.51 3.59E-52 5795070000 1005620 1135370 817750 227644 1744120 1007680 1896520 1874350 1025500 1731650 TRUE FALSE FALSE 935131.231 1045399.146 1134404.7 529966.7365 1525356.206 883362.6869 1421990.637 1447601.422 1114391.166 1298033.569 0.720421454 0.805371426 0.873940958 0.408284307 1.175128474 0.68053917 1.095496042 1.115226491 0.858522609 1 20.30789626 -5.778920626 24.99998732 0.98329995 0.721668905 0.390505682 0.173985011 271.3113784 388001.6865 0.052801933 0.060006001 1.66E-06 5.778920626 -0.261631045 HIYYITGETK ddPTM_HeLa_A485_30min_R1 2 HIYYITGETK 10 0 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 0 ; ; 190.88 3.12E-10 69681000 97666 105754 90050 114966 142189 122055 152338 161724 106392 158334 FALSE FALSE TRUE 119391.4648 118121.0104 123363.2423 121246.3015 128032.1639 128445.6111 119789.7418 122060.9354 127743.8985 118864.2477 1.004435455 0.993747175 1.037849855 1.02004012 1.0771293 1.080607614 1.007786144 1.026893601 1.074704135 1 16.85895532 -4.888970084 2.062910636 1.044151832 0.997421141 0.250120877 0.027735878 0.453264618 3.765333317 0.008070921 0.02473836 1.29E-05 4.888970084 -0.046730692 HIYYITGETK ddPTM_HeLa_A486_30min_R1 1 HIYYITGETK 10 0 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 0 163.64 3.81E-06 28482000 51968 51029 32193 19818 55581 57125 64006 58491 42883 62490 FALSE FALSE TRUE 48325.31156 46985.2762 44658.99176 46137.30555 48609.51271 50077.4983 47991.02181 45173.87615 46600.13297 46842.09726 1.031664131 1.00305663 0.953394369 0.984953882 1.037731348 1.069070371 1.024527607 0.964386285 0.994834469 1 15.51551805 -4.259948691 21.16067844 1.00406027 1.031664205 0.063892732 0.032229936 57.09528597 809667.876 0.009070179 0.05508847 5.50E-05 4.259948691 0.027603935 HKAAAYDIS(ph)EDEED ddPTM_HeLa_A485_30min_R1 3 HKAAAYDISEDEED 14 1 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 HKAAAYDIS(1)EDEED;HKAAAYDIS(1)EDEED;HKAAAYDIS(1)EDEED ;; 109.95 0.00014917 1609760000 810980 1917130 1160950 662190 1685400 1535200 2887700 4127710 1161720 978840 TRUE FALSE FALSE 991379.7032 2141321.677 1590433.716 698363.7629 1517595.658 1615580.698 2270719.305 3115382.651 1394866.548 734833.2022 1.349122087 2.914024122 2.164346564 0.950370453 2.065224671 2.198567911 3.090115278 4.239577963 1.898208388 1 19.48705729 -6.59052099 4.381414353 2.822124676 1.925147267 0.074949479 0.927342192 0.394899867 14.97645263 0.359676394 0.276717999 2.57E-07 6.59052099 -0.896977409 HKAAAYDIS(ph)EDEED ddPTM_HeLa_A486_30min_R1 1 HKAAAYDISEDEED 14 1 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 HKAAAYDIS(1)EDEED 168.69 2.23E-12 997520000 1141400 790900 437440 502940 1009600 613670 1196700 1200900 479990 1572800 TRUE FALSE FALSE 1061393.754 728226.2036 606828.483 1170869.737 882966.5539 537961.6347 897273.0026 927481.2855 521595.9197 1178960.643 0.900279208 0.617684914 0.514714793 0.993137256 0.748936412 0.456301606 0.76107121 0.786694018 0.442420129 1 20.16908413 -10.3752622 4.684155374 1.00036441 0.692419378 0.219039212 0.174884903 5771951009 769819848.9 23089652.88 0.041708526 4.21E-11 10.3752622 -0.307945032 HKDVAEEIANYRPTLDTLHEQASALPQEHAES(ph)PDVR ddPTM_HeLa_A485_30min_R1 2 HKDVAEEIANYRPTLDTLHEQASALPQEHAESPDVR 36 2 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 HKDVAEEIANYRPTLDTLHEQASALPQEHAES(1)PDVR;HKDVAEEIANYRPTLDTLHEQASALPQEHAES(1)PDVR ; 90.82 4.39E-05 1176650000 403555 440602 328252 379423 503720 480438 655906 746923 400894 627230 TRUE FALSE FALSE 493324.4175 492126.5712 449686.0745 400149.9177 453567.8681 505592.9908 515766.3248 563738.9631 481349.7486 470873.1043 1.047680177 1.045136294 0.955004799 0.849804149 0.96324862 1.073735123 1.09534038 1.197220563 1.0222494 1 18.84497879 -6.315645216 4.590786354 1.093119556 0.968300672 0.344380104 0.071484191 0.236469759 10.72488575 0.027219621 0.024257714 4.83E-07 6.315645216 -0.124818883 HKDVAEEIANYRPTLDTLHEQASALPQEHAES(ph)PDVR ddPTM_HeLa_A486_30min_R1 2 HKDVAEEIANYRPTLDTLHEQASALPQEHAESPDVR 36 2 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 HKDVAEEIANYRPTLDTLHEQASALPQEHAES(1)PDVR;HKDVAEEIANYRPTLDTLHEQASALPQEHAES(1)PDVR ; 129.34 1.37E-06 1089970000 700950 462310 414932 186993 678180 607650 753880 741430 512910 751840 TRUE FALSE FALSE 651817.0247 425674.8719 575604.7827 435329.1541 593116.3406 532684.3211 565251.2503 572622.5743 557369.4518 563574.3703 1.15657677 0.755312687 1.021346628 0.772443136 1.052418939 0.945189045 1.002975437 1.016055031 0.988990063 1 19.10424648 HKEAFLK(ac)K ddPTM_HeLa_A485_30min_R1 1 HKEAFLKK 8 2 Q86SW4;P36957-2;P36957 Q86SW4 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" 0 1 HKEAFLK(1)K 90.629 0.023815 14218000 54755 60239 34076 58176 53624 73025 99923 104700 48331 103310 FALSE TRUE FALSE 66935.06085 67283.42704 46682.13042 61354.00757 48285.00627 76848.47608 78573.63475 79022.16084 58030.58838 77556.71828 0.863046585 0.867538345 0.601909563 0.791085659 0.622576707 0.990868074 1.013111907 1.018895108 0.748234191 1 16.24296414 -6.278678507 24.86749331 0.959083443 0.749944672 0.4663225 0.109584784 711.1947178 1025897.41 0.038961087 0.034444345 5.26E-07 6.278678507 -0.209138771 HKELAPYDENWFYTR ddPTM_HeLa_A486_30min_R1 1 HKELAPYDENWFYTR 15 1 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 0 179.81 3.55E-17 433730000 270540 215900 147170 113570 282720 196140 272520 287240 180190 289430 FALSE FALSE TRUE 251576.5431 198791.2977 204158.1653 264396.6995 247258.6213 171942.241 204332.6136 221841.7224 195809.0143 216954.8441 1.159580207 0.9162796 0.941016856 1.218671565 1.139677809 0.792525476 0.941820932 1.022524864 0.902533498 1 17.72703527 -6.241618082 24.97752459 0.933909986 1.066758114 0.318774581 0.104270188 1173.953233 1479341.266 0.036505067 0.036458426 5.73E-07 6.241618082 0.132848128 HKFQSQADQDQQASGLQS(ph)PPSR ddPTM_HeLa_A485_30min_R1 2 HKFQSQADQDQQASGLQSPPSR 22 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 HKFQSQADQDQQASGLQS(1)PPSR;HKFQSQADQDQQASGLQS(1)PPSR ; 257.53 2.13E-59 1600930000 467020 655940 466160 459640 720760 565380 783480 777980 540380 621620 TRUE FALSE FALSE 570906.9878 732646.4771 638611.9825 484748.9693 648998.6037 594982.4226 616083.0976 587179.1852 648829.3093 466661.5741 1.223385467 1.569973869 1.368469182 1.038759127 1.39072647 1.274976247 1.320192473 1.258254842 1.390363693 1 18.83201715 -10.8721323 2.645830824 0.855235565 1.315489893 0.345956292 0.129937674 35748620.03 27742409.15 32708751.27 0.033283021 1.34E-11 10.8721323 0.460254327 HKFQSQADQDQQASGLQS(ph)PPSR ddPTM_HeLa_A486_30min_R1 2 HKFQSQADQDQQASGLQSPPSR 22 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 HKFQSQADQDQQASGLQS(0.953)PPS(0.047)R;HKFQSQADQDQQASGLQS(0.956)PPS(0.044)R ; 123.71 1.73E-06 1178910000 405210 362200 231656 84454 369230 320660 367400 372690 261490 385340 TRUE FALSE FALSE 376806.8715 333497.9529 321359.4072 196613.1801 322917.7305 281100.2294 275472.634 287836.6228 284156.1637 288848.3559 1.30451451 1.154577986 1.112554047 0.680679589 1.117949 0.973175799 0.953692927 0.996497356 0.983755517 1 18.13995276 -4.794459363 2.563570902 0.963012743 1.258958017 0.497051018 0.110007641 0.22622021 2.940172563 0.029177531 0.089372706 1.61E-05 4.794459363 0.295945274 HKGYS(ph)PPESR ddPTM_HeLa_A485_30min_R1 3 HKGYSPPESR 10 1 Q14669-3;G5E9G6;C9JLD7 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 HKGY(0.005)S(0.994)PPESR;HKGY(0.001)S(0.967)PPES(0.032)R;HKGYS(1)PPESR ;; 89.629 0.0019698 295102000 499246 689456 478933 552676 760921 773360 927292 1724785 577425 942198 TRUE FALSE FALSE 610301.5503 770081.8817 656110.2468 582867.2904 685161.0335 813851.9338 729168.4889 1301778.774 693308.901 707325.3785 0.862829992 1.08872367 0.92759325 0.82404408 0.96866457 1.150604741 1.030881276 1.840424243 0.980183834 1 19.4320145 -6.656502133 1.886176541 1.301453394 0.94033778 0.22083984 0.241542865 0.42354724 3.079159984 0.113328073 0.077665372 2.21E-07 6.656502133 -0.361115614 HKGYS(ph)PPESR ddPTM_HeLa_A486_30min_R1 3 HKGYSPPESR 10 1 Q14669-3;G5E9G6;C9JLD7 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 HKGY(0.003)S(0.875)PPES(0.122)R;HKGY(0.006)S(0.992)PPES(0.003)R;HKGYS(0.978)PPES(0.021)R ;; 74.853 0.0052982 405255000 811750 737160 456040 293476 766680 743860 918250 893080 598960 962870 TRUE FALSE FALSE 754850.5169 678744.7569 632630.9012 683226.9595 670515.8454 652090.1162 688494.1377 689745.1798 650878.3351 721761.0848 1.045845409 0.940400877 0.876510129 0.946610968 0.92899972 0.903470871 0.953908644 0.955641963 0.901791949 1 19.46116183 -10.01545436 4.752025255 1.000000979 0.937208375 0.149673143 0.043201277 5.98E-07 1.24E-07 0.041549464 0.010077014 9.65E-11 10.01545436 -0.062792603 HKLTVS(ph)DGES(ph)GEEK ddPTM_HeLa_A485_30min_R1 4 HKLTVSDGESGEEK 14 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 2 0 HKLTVS(1)DGES(1)GEEK;HKLT(0.004)VS(0.996)DGES(1)GEEK;HKLT(0.004)VS(0.996)DGES(1)GEEK;HKLT(0.005)VS(0.995)DGES(1)GEEK ;;; 142.23 1.15E-07 1609290000 2158890 1848710 1003660 5859000 2747440 1735880 4801500 3824240 1683130 7445100 TRUE FALSE FALSE 2639127.632 2064900.553 1374955.6 6179062.334 2473895.227 1826767.993 3775620.3 2886339.144 2020918.752 5589173.587 0.472185662 0.369446488 0.246003381 1.105541318 0.442622722 0.326840447 0.675523893 0.516416085 0.361577382 1 22.41420355 -11.01893786 2.658661017 1.553960867 0.506790191 0.295233195 0.230807994 38741823.31 17059376.54 130964789.6 0.05918329 9.57E-12 11.01893786 -1.047170676 HKLTVS(ph)DGES(ph)GEEK ddPTM_HeLa_A486_30min_R1 4 HKLTVSDGESGEEK 14 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 2 0 HKLT(0.026)VS(0.974)DGES(1)GEEK;HKLT(0.053)VS(0.947)DGES(1)GEEK;HKLT(0.002)VS(0.998)DGES(1)GEEK;HKLT(0.002)VS(0.998)DGES(1)GEEK ;;; 105.32 5.59E-05 1004910000 2228370 2169070 656381 2469230 1582820 2653610 4567740 3845750 1627350 6802510 TRUE FALSE FALSE 2072172.77 1997184.994 910549.3017 5748492.228 1384287.956 2326234.578 3424843.139 2970156.677 1768410.008 5099117.219 0.406378728 0.391672697 0.178569988 1.127350477 0.271476002 0.456203393 0.67165413 0.582484487 0.346807091 1 22.28181607 -14 0.28680282 4.771685305 0.470236732 0.262861676 0.252154429 341.4264729 3.241703775 770.0431683 0.274579864 1.00E-14 14 -4.301448573 HKLTVS(ph)DGES(ph)GEEKK ddPTM_HeLa_A485_30min_R1 2 HKLTVSDGESGEEKK 15 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 2 0 HKLT(0.004)VS(0.996)DGES(1)GEEKK;HKLT(0.132)VS(0.868)DGES(1)GEEKK ; 142.85 6.12E-08 1748280000 905000 606330 252169 3215200 927990 694330 2246750 1491850 539160 4281000 TRUE FALSE FALSE 1106314.128 677235.0191 345456.8067 3390838.235 835596.0572 730684.0452 1766713.508 1125971.448 647364.4665 3213825.486 0.344235906 0.210725511 0.107490842 1.055078519 0.260000445 0.227356479 0.549722913 0.350352393 0.20143112 1 21.61586016 -11.0293887 2.972058423 1.766766442 0.372938514 0.353564519 0.256523124 434661697.3 411086960.6 2259494396 0.066325868 9.35E-12 11.0293887 -1.393827927 HKLTVS(ph)DGES(ph)GEEKK ddPTM_HeLa_A486_30min_R1 3 HKLTVSDGESGEEKK 15 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 2 0 HKLT(0.008)VS(0.992)DGES(1)GEEKK;HKLT(0.009)VS(0.991)DGES(1)GEEKK;HKLTVS(1)DGES(1)GEEKK ;; 119.62 5.43E-05 5032350000 2827830 2188540 451766 3878920 1425130 3297860 6582360 4912720 1511460 10572000 TRUE FALSE FALSE 2629613.72 2015112.12 626701.8939 9030321.79 1246376.907 2891003.563 4935383.907 3794200.9 1642474.57 7924702.388 0.331824918 0.254282372 0.079082073 1.139515574 0.15727744 0.364809102 0.622784764 0.4787815 0.207260095 1 22.91792533 -11.10161772 2.38834393 2.028618078 0.411864304 0.277909649 0.287978416 29727273.4 8631920.388 166076746.1 0.07108107 7.91E-12 11.10161772 -1.616753774 HKMS(ph)PPPSGFGER ddPTM_HeLa_A485_30min_R1 6 HKMSPPPSGFGER 13 1 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 HKMS(0.986)PPPS(0.014)GFGER;HKMS(0.997)PPPS(0.003)GFGER;HKMS(0.999)PPPS(0.001)GFGER;HKMS(1)PPPSGFGER;HKMS(1)PPPSGFGER;HKMS(1)PPPSGFGER ;;;;; 163.41 1.88E-11 8212530000 1420570 1557440 1125505 1718300 1858260 1653690 2362800 2498890 1350460 2189850 TRUE FALSE FALSE 1736570.896 1739569.06 1541876.136 1812166.378 1673245.11 1740274.651 1857968.478 1886033.309 1621484.935 1643960.696 1.056333585 1.058157329 0.937903284 1.102317338 1.017813329 1.058586531 1.130178162 1.147249635 0.986328285 1 20.64874438 -6.52133657 24.98971776 1.080520184 1.034617617 0.036894323 0.061253039 137.9280076 2235109.796 0.022698931 0.017843403 3.01E-07 6.52133657 -0.045902567 HKMS(ph)PPPSGFGER ddPTM_HeLa_A486_30min_R1 5 HKMSPPPSGFGER 13 1 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 HKMS(1)PPPSGFGER;HKMS(0.999)PPPS(0.001)GFGER;HKMS(0.999)PPPS(0.001)GFGER;HKMS(1)PPPSGFGER;HKMS(1)PPPSGFGER ;;;; 153.75 8.91E-08 6698210000 2338730 2051960 1310140 751185 2140620 2107690 2583260 2489330 1695570 2632630 TRUE FALSE FALSE 2174797.104 1889355.216 1817461.295 1748796.643 1872123.479 1847664.637 1936901.025 1922563.901 1842543.373 1973402.312 1.102054604 0.957410055 0.920978598 0.886183538 0.948678061 0.936283811 0.981503373 0.974238192 0.933688666 1 20.91225367 -9.805377493 22.75159842 0.999999997 0.956715656 0.043344516 0.054138327 0 0 0.053436936 0.012960361 1.57E-10 9.805377493 -0.04328434 HKS(ph)DNETNLQQQVVWGNR ddPTM_HeLa_A485_30min_R1 4 HKSDNETNLQQQVVWGNR 18 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 HKS(0.883)DNET(0.117)NLQQQVVWGNR;HKS(0.788)DNET(0.212)NLQQQVVWGNR;HKS(0.5)DNET(0.5)NLQQQVVWGNR;HKS(0.998)DNET(0.002)NLQQQVVWGNR ;;; 238.64 1.73E-45 1859010000 1272080 1300220 923234 1614290 1523810 1345750 2198470 2244340 1262252 2453440 TRUE FALSE FALSE 1555049.807 1452269.419 1264776.676 1702474.575 1372094.126 1416211.389 1728748.925 1693912.096 1515574.398 1841842.56 0.8442903 0.788487274 0.686690982 0.924332303 0.744957335 0.768910123 0.938597556 0.919683437 0.822857736 1 20.81271832 -7.756418172 0.402745393 1.002030414 0.777900184 0.391191484 0.073687716 1.207783633 0.56135686 0.102872215 0.065172522 1.75E-08 7.756418172 -0.22413023 HKS(ph)DNETNLQQQVVWGNR ddPTM_HeLa_A486_30min_R1 4 HKSDNETNLQQQVVWGNR 18 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 HKS(1)DNETNLQQQVVWGNR;HKS(0.837)DNET(0.163)NLQQQVVWGNR;HKS(0.858)DNET(0.142)NLQQQVVWGNR;HKS(0.856)DNET(0.144)NLQQQVVWGNR ;;; 278.98 1.67E-69 2073750000 2121510 1823440 1033780 839780 1775290 2023450 2516030 2411880 1574410 2975350 TRUE FALSE FALSE 1972803.104 1678943.974 1434087.302 1955050.28 1552616.574 1773817.312 1886492.682 1862747.575 1710881.126 2230302.994 0.884544885 0.752787392 0.64300111 0.876585058 0.69614603 0.79532571 0.845845918 0.835199334 0.767107039 1 21.08880829 -11.45917734 0.283467422 1.313706433 0.766425293 0.427697038 0.073419793 42.08206524 1.451420601 8.268064875 0.085351634 3.47E-12 11.45917734 -0.547281139 HKS(ph)DS(ph)PES(ph)DAER ddPTM_HeLa_A486_30min_R1 1 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 3 0 HKS(1)DS(1)PES(1)DAER 92.679 0.0036156 710360000 1034900 896940 538740 802320 786280 1041600 1340400 1104500 902180 2405000 TRUE FALSE FALSE 962358.8542 825863.2078 747354.556 1867841.507 687657.4306 913097.9822 1005017.743 853029.4611 980381.6888 1802772.346 0.53382162 0.45810732 0.414558476 1.036093942 0.381444408 0.506496555 0.557484557 0.473176473 0.543818908 1 20.78178579 -10.31673779 6.464011176 1.00001742 0.54536378 0.383586181 0.173035707 4.30E-05 4.55E-06 0.16595598 0.040248698 4.82E-11 10.31673779 -0.45465364 HKS(ph)DS(ph)PES(ph)DAEREK ddPTM_HeLa_A485_30min_R1 2 HKSDSPESDAEREK 14 2 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 3 0 HKS(1)DS(1)PES(1)DAEREK;HKS(1)DS(1)PES(1)DAEREK ; 117.31 0.00014524 1527480000 1001670 856890 632530 3394300 1878120 1076390 2953300 2174170 863100 5560500 TRUE FALSE FALSE 1224488.036 957095.8315 866529.1688 3579722.014 1691127.778 1132748.116 2322303.329 1640951.399 1036316.253 4174369.683 0.293334833 0.229279126 0.207583236 0.857547914 0.405121709 0.271357882 0.556324309 0.393101599 0.248256942 1 21.99312694 -11.18778433 2.272765669 2.626153332 0.391354066 0.493555434 0.186887177 45215229.29 9253989.069 378276839.1 0.048437944 6.49E-12 11.18778433 -2.234799267 HKS(ph)ESPCESPYPNEK ddPTM_HeLa_A486_30min_R1 1 HKSESPCESPYPNEK 15 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H0Y594;B7ZBA0;B7ZB98 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 HKS(0.441)ES(0.441)PCES(0.118)PYPNEK 106.19 0.00017835 183650000 274680 297530 127630 30662 209960 256410 278790 249760 243990 171190 TRUE FALSE FALSE 255426.3504 273952.6392 177051.754 71382.68557 183624.859 224776.7412 209033.7933 192895.1002 265139.2497 128322.9097 1.990496872 2.13486929 1.379736124 0.556273901 1.430959284 1.751649348 1.628967062 1.503200797 2.066187949 1 16.96941924 -4.763053091 24.98476034 1.422213301 2.062683233 0.307403169 0.388967264 50.89364197 788033.7532 0.107534722 0.244556975 1.73E-05 4.763053091 0.640469932 HKS(ph)HDNVYSLGGLEGR ddPTM_HeLa_A485_30min_R1 3 HKSHDNVYSLGGLEGR 16 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 HKS(1)HDNVYSLGGLEGR;HKS(1)HDNVYSLGGLEGR;HKS(1)HDNVYSLGGLEGR ;; 226.08 3.19E-34 1407280000 1113980 1268350 907760 1144070 1376820 1208470 1591040 1636870 910770 1611520 TRUE FALSE FALSE 1361781.008 1416672.499 1243578.199 1206567.647 1239738.966 1271743.621 1251101.306 1235425.066 1093553.185 1209797.722 1.125627023 1.170999477 1.027922418 0.99733007 1.024748968 1.051203517 1.034140901 1.021183165 0.903914072 1 20.20633442 -4.818247459 5.740861018 1.010116431 1.148244013 0.674421795 0.039176642 0.103890773 6.977800179 0.010473035 0.022946135 1.52E-05 4.818247459 0.138127582 HKS(ph)HDNVYSLGGLEGR ddPTM_HeLa_A486_30min_R1 2 HKSHDNVYSLGGLEGR 16 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 HKS(1)HDNVYSLGGLEGR;HKS(1)HDNVYSLGGLEGR ; 185.06 5.41E-18 877560000 682920 550960 424130 175518 653140 634050 719090 651060 486430 762270 TRUE FALSE FALSE 635050.8346 507299.923 588364.4946 408614.7742 571217.0909 555827.3575 539166.0762 502827.8505 528594.1441 571392.6305 1.111408865 0.887830707 1.02970263 0.715120834 0.999692786 0.972759059 0.943599983 0.880004088 0.925097938 1 19.1241229 -4.254209374 24.33774876 0.925071982 1.111408993 0.294245123 0.084997004 741.6591932 2496492.562 0.020266218 0.198520931 5.57E-05 4.254209374 0.186337011 HKS(ph)TSSTLCPAVCPAAGHTLTPDR ddPTM_HeLa_A485_30min_R1 1 HKSTSSTLCPAVCPAAGHTLTPDR 24 1 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 0 HKS(0.589)T(0.135)S(0.241)S(0.013)T(0.023)LCPAVCPAAGHTLTPDR 260.53 1.37E-61 473960000 235540 227360 178080 263490 241220 196320 321090 252940 234190 344960 TRUE FALSE FALSE 287935.0604 253947.7742 243959.2025 277883.7915 217203.2898 206599.0116 252486.4984 190906.0684 281189.7849 258967.8205 1.111856523 0.980615173 0.942044467 1.073043712 0.838726948 0.797778702 0.974972481 0.737180658 1.085809752 1 17.98241331 -3.217054426 0.637491261 0.90423921 1.725342897 0.203041146 0.107340446 16.12968889 1.825940107 0.045515242 13.05921015 0.00060666 3.217054426 0.821103687 HKS(ph)TSSTLCPAVCPAAGHTLTPDR ddPTM_HeLa_A486_30min_R1 2 HKSTSSTLCPAVCPAAGHTLTPDR 24 1 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 0 HKS(0.442)T(0.106)S(0.151)S(0.151)T(0.151)LCPAVCPAAGHTLTPDR;HKS(0.776)T(0.178)S(0.041)S(0.002)T(0.002)LCPAVCPAAGHTLTPDR ; 250.25 7.71E-50 850220000 439210 477540 328480 86707 487780 523950 606720 554030 497970 467580 TRUE FALSE FALSE 408423.6471 439697.9912 455676.253 201858.2779 426598.084 459310.3761 454912.2388 427889.4634 541134.4405 350494.9246 1.165276923 1.254506015 1.300093728 0.575923541 1.217130561 1.310462275 1.297913912 1.220815006 1.543915197 1 18.41903403 -5.987929553 24.99990651 1.286980144 1.07719097 0.153619574 0.222165804 430.3128598 891244.2892 0.06982665 0.079123052 1.03E-06 5.987929553 -0.209789174 HKSDNET(ph)NLQQQVVWGNR ddPTM_HeLa_A486_30min_R1 1 HKSDNETNLQQQVVWGNR 18 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 HKS(0.345)DNET(0.655)NLQQQVVWGNR 170.49 2.94E-12 369920000 382170 343300 175220 144520 306210 334050 408270 396250 252830 503040 TRUE FALSE FALSE 355381.8565 316095.6577 243069.8766 336449.8636 267802.2865 292838.3074 306116.5278 306032.5251 274745.508 377075.5098 0.942468676 0.83828212 0.644618572 0.892261245 0.710208644 0.776603889 0.81181758 0.811594806 0.728621989 1 18.52449393 -10.32039655 5.42440352 1.000042655 0.792788806 0.355938204 0.082605971 4.14E-05 5.18E-06 0.077647587 0.018828436 4.78E-11 10.32039655 -0.207253849 HKSDS(ph)PES(ph)DAER ddPTM_HeLa_A485_30min_R1 2 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 0 HKS(0.003)DS(0.997)PES(1)DAER;HKS(0.004)DS(0.996)PES(1)DAER ; 138.97 7.31E-06 2184500000 2196170 3837800 2208020 1942290 3047800 2090980 3761900 3290800 2438300 3085800 TRUE FALSE FALSE 2684700.44 4286597.326 3024858.481 2048392.385 2744350.331 2200460.48 2958139.333 2483726.14 2927644.445 2316566.85 1.158913433 1.850409508 1.305750569 0.88423625 1.184662696 0.949879983 1.276949695 1.072158198 1.263785867 1 21.14355688 -4.999155521 24.99953852 1.098794427 1.523016186 0.420920579 0.19615621 23.93096287 708336.9147 0.047273455 0.09709173 1.00E-05 4.999155521 0.424221759 HKSDS(ph)PES(ph)DAER ddPTM_HeLa_A486_30min_R1 2 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 0 HKSDS(1)PES(1)DAER;HKS(0.014)DS(0.986)PES(1)DAER ; 170.61 1.54E-10 1733780000 3706700 3826600 1952840 269370 2757600 2848200 3674300 3143900 3371000 2934400 TRUE FALSE FALSE 3446879.471 3523366.28 2709031.947 627106.9732 2411716.094 2496818.042 2754951.277 2428102.601 3663200.994 2199607.14 1.567043227 1.601816168 1.231598087 0.285099535 1.096430381 1.135119993 1.252474238 1.103880123 1.665388754 1 21.06881444 HKSDSPES(ph)DAER ddPTM_HeLa_A485_30min_R1 10 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDS(0.001)PES(0.999)DAER;HKSDSPES(1)DAER;HKS(0.001)DS(0.044)PES(0.955)DAER;HKSDS(0.046)PES(0.954)DAER;HKSDS(0.003)PES(0.997)DAER ;;;;;;;;; 192.23 1.14E-13 3827961000 1891026 3931429 2690254 842058.5 3297639 2127903 2961509 2885482 2479306 1849708.8 TRUE FALSE FALSE 2311678.21 4391175.423 3685490.905 888058.0237 2969314.482 2239316.711 2328758.409 2177813.015 2976879.973 1388610.438 1.664742067 3.162280294 2.654085556 0.639529993 2.138335131 1.61263134 1.677042276 1.5683398 2.143783377 1 20.40521049 -5.210793188 24.99900142 1.59730484 2.560561232 0.3808551 0.55192353 357.0402474 176234.7008 0.141827458 0.245652013 6.15E-06 5.210793188 0.963256393 HKSDSPES(ph)DAER ddPTM_HeLa_A486_30min_R1 10 HKSDSPESDAER 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKSDSPES(1)DAER;HKS(0.001)DS(0.097)PES(0.903)DAER;HKSDSPES(1)DAER;HKSDS(0.013)PES(0.987)DAER;HKSDSPES(1)DAER;HKSDS(0.001)PES(0.999)DAER ;;;;;;;;; 202.03 2.12E-17 2836521000 3778962 3939802 2618523 242775.6 3261380 2356431 2766036 2540888.5 3622168 1343099 TRUE FALSE FALSE 3514076.278 3627597.741 3632485.232 565193.866 2852307.309 2065718.502 2073944.537 1962383.656 3936140.439 1006778.268 3.490417294 3.603174458 3.608029043 0.561388623 2.833103772 2.051810778 2.05998143 1.949171647 3.909639851 1 19.94131455 -5.130729733 20.3860735 2.121263744 3.571395179 0.391399856 0.862716147 4.034882458 628.8687637 0.223608054 0.387302728 7.40E-06 5.130729733 1.450131435 HKSDSPES(ph)DAEREK ddPTM_HeLa_A485_30min_R1 2 HKSDSPESDAEREK 14 2 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 HKSDSPES(1)DAEREK;HKSDSPES(1)DAEREK ; 185.09 8.29E-18 1109270000 637080 922550 736610 548840 2147040 975050 2029230 2185350 1099480 1385660 TRUE FALSE FALSE 778796.2481 1030434.197 1009112.692 578821.7395 1933273.159 1026102.11 1595668.433 1649389.486 1320135.551 1040240.463 0.748669443 0.990573078 0.970076369 0.55643071 1.85848679 0.986408572 1.533941901 1.585584818 1.26906768 1 19.98848563 -5.749309063 24.9999982 1.390320282 0.839849906 0.500277841 0.271376078 185.050912 381379.2045 0.076366619 0.0978306 1.78E-06 5.749309063 -0.550470376 HKSDSPES(ph)DAEREK ddPTM_HeLa_A486_30min_R1 2 HKSDSPESDAEREK 14 2 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 HKSDS(0.001)PES(0.999)DAEREK;HKSDS(0.001)PES(0.999)DAEREK ; 164.53 2.92E-12 511840000 930310 933370 603150 98200 1328960 890630 1423370 1309730 913890 531830 TRUE FALSE FALSE 865100.0731 859406.3619 836705.8329 228614.5628 1162269.445 780753.1259 1067227.771 1011533.07 993106.721 398656.3064 2.170039855 2.155757599 2.098814993 0.573462803 2.915467349 1.958461746 2.677062307 2.537356249 2.491135109 1 18.60478597 HKSDVEIPATVTAFSFEDDTVPLS(ph)PLK ddPTM_HeLa_A485_30min_R1 1 HKSDVEIPATVTAFSFEDDTVPLSPLK 27 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 HKS(0.001)DVEIPAT(0.001)VT(0.007)AFS(0.038)FEDDT(0.242)VPLS(0.71)PLK 44.3 0.035456 29264000 16575 20296 14011 12884 33443 18538 25509 28524 16317 23525 TRUE FALSE FALSE 20262.05157 22669.44065 19194.25195 13587.8203 30113.29749 19508.62101 20058.79376 21528.44428 19591.67223 17660.65045 1.147299281 1.283613008 1.086837204 0.76938391 1.705106932 1.104637741 1.135790203 1.219006307 1.109340355 1 14.10825086 -8.039118385 4.494077799 1.000099538 1.18097573 0.062551576 0.217723207 0.667820162 42.58586373 0.206368076 0.053970945 9.14E-09 8.039118385 0.180876192 HKSDVEIPATVTAFSFEDDTVPLS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 HKSDVEIPATVTAFSFEDDTVPLSPLK 27 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 HKSDVEIPATVTAFSFEDDTVPLS(1)PLK;HKSDVEIPATVTAFSFEDDTVPLS(1)PLK ; 176.87 6.77E-15 379100000 392041 317368 176440 34420.7 340506 251041 337840 285659 324171 127007 TRUE FALSE FALSE 364560.9504 292218.6038 244762.2932 80133.12913 297796.5624 220070.1138 253308.8587 220620.6816 352270.4033 95203.62052 3.829276118 3.069406418 2.570934717 0.841702539 3.127996191 2.311572949 2.660706151 2.317356004 3.700178642 1 16.53872882 -4.530940578 2.496721175 2.350706654 3.814062441 0.260202876 0.816305566 0.463583278 5.094717407 0.211384759 1.116764989 2.94E-05 4.530940578 1.463355787 HKSGSMEEDVDT(ph)SPGGDYYTSPSS(ph)PTSSSR ddPTM_HeLa_A486_30min_R1 1 HKSGSMEEDVDTSPGGDYYTSPSSPTSSSR 30 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 HKSGSMEEDVDT(0.759)S(0.24)PGGDYYTSPS(0.123)S(0.392)PT(0.296)S(0.071)S(0.062)S(0.055)R 116.55 5.90E-05 162720000 87803 68916 70989 4162 101800 48967 54071 54730 65322 23291 TRUE FALSE FALSE 81648.46312 63454.84517 98477.84195 9689.346336 89031.29475 42925.9494 40541.8639 42269.17375 70984.16355 17458.782 4.676641424 3.634551664 5.640590618 0.554984095 5.099513514 2.458702411 2.322147324 2.42108377 4.065814187 1 14.09166529 -1 0.086862267 3.95E-16 12.34550964 0.269200146 1.390178702 231.0259632 1.452510161 28.23232408 340.361807 0.1 1 12.34550964 HKSGSMEEDVDTS(ph)PGGDYYTSPSS(ph)PTSSSR ddPTM_HeLa_A485_30min_R1 1 HKSGSMEEDVDTSPGGDYYTSPSSPTSSSR 30 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 HKSGSMEEDVDT(0.181)S(0.814)PGGDY(0.001)Y(0.002)T(0.002)S(0.017)PS(0.187)S(0.588)PT(0.115)S(0.035)S(0.031)S(0.027)R 94.569 0.000623 190110000 62443 194450 142440 24989 205500 123220 162160 227060 132190 58705 TRUE FALSE FALSE 76333.22992 217189.236 195134.4834 26354.08579 185039.6984 129671.6087 127513.1913 171373.179 158719.3205 44070.92389 1.732054225 4.928175243 4.427737524 0.597992587 4.198679813 2.942339239 2.893363243 3.888576954 3.60145208 1 15.42753952 HKTTGQVVAMK(ac)K ddPTM_HeLa_A485_30min_R1 2 HKTTGQVVAMKK 12 2 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 0 1 ; HKTTGQVVAMK(1)K;HKTTGQVVAMK(1)K 85.258 0.016369 89563000 156834 262080 158126 86992 292750 281480 382160 533770 225570 212198 FALSE TRUE FALSE 191721.1822 292727.9762 216623.3876 91744.15268 263602.7821 296217.8575 300508.394 402862.0706 270839.8299 159300.9438 1.203515671 1.837578417 1.35983744 0.575917195 1.654747146 1.859485892 1.88641942 2.528937123 1.700177183 1 17.28139529 -5.990870362 24.99548154 1.880813879 1.272414106 0.23941123 0.452318608 267.0721916 731195.443 0.14118422 0.159874818 1.02E-06 5.990870362 -0.608399773 HKTTGQVVAMK(ac)K ddPTM_HeLa_A486_30min_R1 1 HKTTGQVVAMKK 12 2 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 0 1 HKTTGQVVAMK(1)K 73.624 0.026726 8300600 28843 16786 12890 2060.2 22575 15186 20788 21442 17137 18207 FALSE TRUE FALSE 26821.25465 15455.81623 17881.35321 4796.249717 19743.433 13312.50572 15586.62253 16560.12468 18622.44896 13647.84869 1.965236811 1.132472712 1.310195739 0.351428993 1.446633344 0.975428877 1.142057102 1.213387183 1.364497026 1 13.73638594 -4.2358584 3.608078136 1.095765648 2.08986944 0.443543792 0.289221448 0.307701751 6.873668235 0.071273122 0.849608557 5.81E-05 4.2358584 0.994103792 HLAESESLLTS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 HLAESESLLTSPPK 14 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 HLAESESLLT(0.012)S(0.988)PPK 107.98 0.00023271 54407000 150160 147840 75752 45636 122090 161340 203250 181690 121400 210640 TRUE FALSE FALSE 139634.5594 136124.62 105085.2031 106242.9143 106776.3338 141435.5112 152394.7002 140323.1533 131923.0497 157894.373 0.884354248 0.86212458 0.665541153 0.672873341 0.676251672 0.895760302 0.965168659 0.888715352 0.835514574 1 17.26860023 -6.357792182 6.504273345 0.914873288 0.749455608 0.507379662 0.081283269 0.235638609 13.45830244 0.03170652 0.027891809 4.39E-07 6.357792182 -0.16541768 HLAGYESSSTLMTSELESTSLGDS(ph)DEEDTMSR ddPTM_HeLa_A485_30min_R1 2 HLAGYESSSTLMTSELESTSLGDSDEEDTMSR 32 0 I3L2N2;O14641;I3L0M7;I3L2W9 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 0 HLAGYESSSTLMTSELESTS(0.008)LGDS(0.992)DEEDTMSR;HLAGYESSSTLMTSELESTS(0.005)LGDS(0.994)DEEDTMSR ; 178.85 6.85E-21 348540000 46979 76371 68173 38205 90573 48656 73078 85319 63281 65994 TRUE FALSE FALSE 57429.31647 85301.92411 93393.02962 40292.04241 81555.2341 51203.55292 57464.28831 64394.38147 75980.91625 49542.91033 1.159183344 1.721778627 1.88509373 0.813275646 1.646153477 1.033519278 1.159889234 1.299769857 1.533638532 1 15.596391 -5.247895629 24.99960365 1.233252896 1.601994537 0.261064333 0.288406273 1099.283219 2029098.392 0.075847224 0.130424113 5.65E-06 5.247895629 0.36874164 HLAGYESSSTLMTSELESTSLGDS(ph)DEEDTMSR ddPTM_HeLa_A486_30min_R1 1 HLAGYESSSTLMTSELESTSLGDSDEEDTMSR 32 0 I3L2N2;O14641;I3L0M7;I3L2W9 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 0 HLAGYESSSTLMTSELESTS(0.001)LGDS(0.999)DEEDTMSR 224.79 3.15E-39 214970000 112060 114900 122500 11805 162680 99314 135310 125230 152340 90830 TRUE FALSE FALSE 104205.1727 105794.9055 169935.2807 27482.63659 142275.1575 87061.64843 101454.0068 96717.86275 165544.9539 68085.5768 1.530502899 1.553851939 2.49590719 0.403648436 2.089651938 1.278709126 1.49009543 1.420533794 2.431424711 1 16.05506159 HLAPPPLLS(ph)PLLPSIKPTVR ddPTM_HeLa_A485_30min_R1 2 HLAPPPLLSPLLPSIKPTVR 20 1 Q14676;Q14676-3;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 HLAPPPLLS(1)PLLPSIKPTVR;HLAPPPLLS(1)PLLPSIKPTVR ; 171.58 6.96E-14 832110000 358549 420201 335320 398870 585235 445787 542938 637648 403162 550781 TRUE FALSE FALSE 438306.9881 469339.8517 459368.8218 420659.2581 526966.9485 469127.718 426934.8609 481263.8282 484072.9154 413481.4331 1.060040314 1.135092931 1.110978112 1.017359486 1.274463389 1.134579888 1.032536958 1.163930928 1.170724673 1 18.65746302 -4.251819834 22.40805487 1.120401494 1.060040179 0.039892885 0.078423415 1064.148215 2478624.763 0.019079935 0.218229161 5.60E-05 4.251819834 -0.060361315 HLAPPPLLS(ph)PLLPSIKPTVR ddPTM_HeLa_A486_30min_R1 2 HLAPPPLLSPLLPSIKPTVR 20 1 Q14676;Q14676-3;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 HLAPPPLLS(1)PLLPSIKPTVR;HLAPPPLLS(1)PLLPSIKPTVR ; 144.22 1.35E-09 886270000 914660 828770 550810 305630 889740 814020 938400 944420 662230 963160 TRUE FALSE FALSE 850547.0573 763095.2469 764098.3832 711522.0857 778140.5127 713594.4887 703602.3946 729396.1825 719632.6296 721978.4669 1.178078151 1.056950147 1.058339574 0.985517046 1.077789087 0.988387496 0.974547617 1.010274151 0.996750821 1 19.46159628 -1.000000001 0.634240188 1.000792391 14.79328097 0.775123489 0.027994288 92.30636548 0.632329123 0.01181826 1780.711354 0.1 1.000000001 13.79248858 HLAQAS(ph)QELQ ddPTM_HeLa_A485_30min_R1 1 HLAQASQELQ 10 0 Q8NBP7;A0A669KBG0 Q8NBP7 PCSK9 Proprotein convertase subtilisin/kexin type 9 1 0 HLAQAS(1)QELQ 75.89 0.010262 1831600000 393890 458030 369630 292650 530790 421880 528190 524380 368250 387820 TRUE FALSE FALSE 481509.4716 511592.6242 506371.5186 308636.7285 477942.6839 443968.9844 415337.8916 395774.9828 442154.3972 291143.6113 1.65385553 1.757183068 1.739249975 1.060084153 1.641604574 1.524914053 1.42657395 1.35938062 1.518681434 1 18.15137144 -11.21124986 0.084106595 2.25E-12 2.072788277 0.466344714 0.182866611 110.7928553 1.233436576 29.33485489 7.032569445 6.15E-12 11.21124986 2.072788277 HLAQAS(ph)QELQ ddPTM_HeLa_A486_30min_R1 1 HLAQASQELQ 10 0 Q8NBP7;A0A669KBG0 Q8NBP7 PCSK9 Proprotein convertase subtilisin/kexin type 9 1 0 HLAQAS(1)QELQ 60.49 0.029069 1580700000 294940 330710 255330 81196 376800 284500 297740 278890 248700 288900 TRUE FALSE FALSE 274266.2291 304503.3352 354200.614 189028.3914 329538.2305 249401.2826 223242.3028 215392.8351 270257.5162 216557.5596 1.266481898 1.406108084 1.635595703 0.872878286 1.521711969 1.151662787 1.030868205 0.99462164 1.247970825 1 17.72439101 -6.132570385 0.792349992 1.054787831 1.390792583 0.266107456 0.202896249 0.879721651 1.219490895 0.129404896 0.142681304 7.37E-07 6.132570385 0.336004752 HLDAHTAAHS(ph)QSPR ddPTM_HeLa_A485_30min_R1 1 HLDAHTAAHSQSPR 14 0 H7C3X3;H0Y6N5;E9PHI4;O94901-9 H7C3X3 SUN1 1 0 HLDAHTAAHS(0.673)QS(0.326)PR 109.04 0.00020159 296420000 121970 157130 112510 114190 141170 111560 120390 234720 118200 279260 TRUE FALSE FALSE 149101.8057 175504.9867 154132.1309 120427.9106 127114.6191 117401.1091 94667.693 177154.552 141921.6558 209645.6214 0.711208776 0.837150738 0.735203196 0.574435611 0.606330904 0.559997907 0.451560554 0.845019089 0.67695979 1 17.67759317 -8.37099906 1.243884633 0.998085386 0.653469896 0.42827608 0.116550914 1.405818893 3.402434481 0.12087844 0.036632005 4.26E-09 8.37099906 -0.34461549 HLDAHTAAHS(ph)QSPR ddPTM_HeLa_A486_30min_R1 1 HLDAHTAAHSQSPR 14 0 H7C3X3;H0Y6N5;E9PHI4;O94901-9 H7C3X3 SUN1 1 0 HLDAHT(0.001)AAHS(0.876)QS(0.122)PR 155.92 1.60E-08 94994000 137340 121210 111230 21043 143030 103470 110880 89165 106570 110880 TRUE FALSE FALSE 127713.1752 111604.8782 154301.2348 48989.16745 125089.8437 90704.92341 83136.65123 68864.07596 115807.5734 83114.92629 1.536585315 1.342777803 1.856480439 0.589414798 1.505022615 1.091319303 1.000261384 0.82854042 1.393342671 1 16.34281997 -5.248116885 24.99763472 1.068701953 1.55503082 0.437019818 0.270063024 767.7011582 1440471.97 0.070190534 0.120673179 5.65E-06 5.248116885 0.486328866 HLDAHTAAHSQS(ph)PR ddPTM_HeLa_A485_30min_R1 1 HLDAHTAAHSQSPR 14 0 H7C3X3;H0Y6N5;E9PHI4;O94901-9 H7C3X3 SUN1 1 0 HLDAHTAAHS(0.162)QS(0.838)PR 130.27 1.36E-05 302960000 97639 123120 85548 79205 99823 87493 95155 154420 96036 206740 TRUE FALSE FALSE 119358.4587 137517.813 117195.7651 83531.76859 89884.27162 92073.99819 74824.35691 116548.2529 115309.5443 155203.5228 0.769044778 0.886048271 0.755110213 0.538207942 0.579138089 0.593246832 0.482104759 0.750938193 0.742957004 1 17.24380178 -9.531998931 6.922778913 0.999999849 0.672799038 0.396717185 0.119214711 1.01E-10 0 0.129845913 0.03149226 2.94E-10 9.531998931 -0.327200811 HLDAHTAAHSQS(ph)PR ddPTM_HeLa_A486_30min_R1 1 HLDAHTAAHSQSPR 14 0 H7C3X3;H0Y6N5;E9PHI4;O94901-9 H7C3X3 SUN1 1 0 HLDAHTAAHS(0.104)QS(0.896)PR 155.63 1.72E-08 116850000 158180 143120 128800 24860 163510 123990 115950 110810 145260 119170 TRUE FALSE FALSE 147092.3988 131778.65 178674.8094 57875.33635 143001.0511 108693.3744 86938.08361 85580.98197 157851.2538 89329.05633 1.646635539 1.47520477 2.000186912 0.647889262 1.600834678 1.216775133 0.973234098 0.958041935 1.767076249 1 16.4468419 -5.245915774 24.99732617 1.176684968 1.68412861 0.362923768 0.327881017 933.7652108 1503619.848 0.085878477 0.148066207 5.68E-06 5.245915774 0.507443642 HLDGEEDGS(ph)SDQSQASGTTGGR ddPTM_HeLa_A485_30min_R1 1 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 HLDGEEDGS(0.643)S(0.357)DQSQASGTTGGR 208.89 2.80E-27 962010000 67459 81898 87466 84732 111730 68916 112870 90560 92199 120410 TRUE FALSE FALSE 82465.02182 91475.25868 119823.3132 89360.69461 100605.7689 72524.3352 88754.40244 68350.01801 110702.4936 90394.00298 0.912284212 1.011961587 1.325567064 0.988568839 1.112969507 0.80231357 0.981861623 0.756134431 1.224666349 1 16.46393944 -6.228217567 24.63231242 0.939557678 1.076675076 0.121123412 0.155386396 1024.168806 759370.0774 0.050002161 0.049998821 5.91E-07 6.228217567 0.137117398 HLDGEEDGS(ph)SDQSQASGTTGGR ddPTM_HeLa_A486_30min_R1 1 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 HLDGEEDGS(0.689)S(0.311)DQSQASGTTGGR 189.51 3.94E-26 0 82894 109070 88646 30022 129530 86645 106870 104960 103900 113900 TRUE FALSE FALSE 77083.55867 100426.896 122972.1052 69892.73323 113283.1396 75955.62084 80129.99564 81062.89926 112906.1357 85378.69864 0.90284298 1.176252362 1.440313652 0.818620269 1.326831416 0.889631981 0.938524444 0.949451099 1.322415748 1 16.38158855 -6.283764017 24.94916177 1.011752859 1.134987177 0.072006777 0.201622729 2197.001951 2455276.615 0.069896066 0.061686624 5.20E-07 6.283764017 0.123234318 HLDGEEDGSS(ph)DQS(ph)QAS(ph)GTTGGR ddPTM_HeLa_A485_30min_R1 1 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 3 0 HLDGEEDGS(0.192)S(0.809)DQS(0.998)QAS(0.933)GT(0.055)T(0.013)GGR 76.237 0.00013778 0 65348 113740 86096 88537 107300 87880 104070 94335 92045 121110 TRUE FALSE FALSE 79884.43715 127040.9036 117946.4932 93373.55212 96616.83525 92481.26091 81834.59433 71199.19334 110517.5872 90919.50586 0.878628149 1.39728986 1.297262804 1.026991417 1.062663444 1.017177338 0.900077421 0.783101411 1.2155542 1 16.47230222 -5.400280487 4.849301727 0.986648158 1.210491154 0.222342349 0.161617751 0.299321518 10.54269717 0.04587299 0.068843299 3.98E-06 5.400280487 0.223842996 HLDGEEDGSS(ph)DQS(ph)QAS(ph)GTTGGR ddPTM_HeLa_A486_30min_R1 1 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 3 0 HLDGEEDGS(0.048)S(0.952)DQS(1)QAS(0.995)GT(0.004)T(0.001)GGR 110.25 0.00011071 212420000 91569 123930 121380 39566 132450 89466 132330 117180 118530 138820 TRUE FALSE FALSE 85150.48596 114109.3355 168381.5867 92111.64755 115836.886 78428.59454 99219.63436 90500.67202 128804.2758 104058.5684 0.818293844 1.096587597 1.618142448 0.885190417 1.11318931 0.753696651 0.953497976 0.869708986 1.237805572 1 16.66703624 HLDGEEDGSS(ph)DQS(ph)QAS(ph)GTTGGRR ddPTM_HeLa_A486_30min_R1 2 HLDGEEDGSSDQSQASGTTGGRR 23 1 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 3 0 HLDGEEDGS(0.487)S(0.516)DQS(0.932)QAS(0.769)GT(0.145)T(0.151)GGRR;HLDGEEDGS(0.452)S(0.548)DQS(0.999)QAS(0.915)GT(0.067)T(0.019)GGRR ; 103.88 0.00023733 348260000 191517 281950 240960 105265 385730 181219 328280 335780 217688 261250 TRUE FALSE FALSE 178092.6473 259607.2552 334266.1651 245062.2398 337348.1466 158862.0423 246140.8718 259330.224 236557.3711 195831.2995 0.909418707 1.325667836 1.706908783 1.251394646 1.722646724 0.811218853 1.256902611 1.324253195 1.207965078 1 17.57925184 -6.260621373 24.99984842 1.148885953 1.390671171 0.206655161 0.254467899 139.1249572 4251968.711 0.087305103 0.082476125 5.49E-07 6.260621373 0.241785218 HLDGEEDGSS(ph)DQSQASGTTGGR ddPTM_HeLa_A485_30min_R1 1 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 HLDGEEDGS(0.034)S(0.966)DQSQASGTTGGR 134.26 8.59E-07 134880000 23704 37634 46568 37595 47031 41585 42399 45591 43458 52326 TRUE FALSE FALSE 28976.87302 42034.96893 63795.44106 39648.71965 42348.4285 43762.3263 33340.10728 34409.73577 52179.62198 39282.09119 0.737661162 1.070079715 1.62403373 1.009333222 1.078059422 1.114052867 0.84873555 0.875964968 1.328331064 1 15.26158411 -6.120144876 1.857449237 1.010524512 1.139196586 0.019032844 0.238798684 1.286042179 8.804574625 0.097495292 0.098545795 7.58E-07 6.120144876 0.128672074 HLDGEEDGSS(ph)DQSQASGTTGGR ddPTM_HeLa_A486_30min_R1 2 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 HLDGEEDGS(0.003)S(0.997)DQSQASGTTGGR;HLDGEEDGS(0.095)S(0.905)DQSQASGTTGGR ; 328.42 1.22E-114 1247330000 152755 198639 140960 48078 206412 159397 176000 185748 181480 204445 TRUE FALSE FALSE 142047.6633 182898.1222 195543.487 111928.0137 180521.8822 139732.2188 131962.9385 143457.2353 197210.8325 153250.6413 0.926897676 1.193457467 1.275971738 0.730359187 1.177951888 0.911788803 0.861092243 0.936095497 1.286851597 1 17.22553359 HLDRS(ph)PESDRPR ddPTM_HeLa_A485_30min_R1 6 HLDRSPESDRPR 12 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(0.945)PES(0.055)DRPR;HLDRS(0.997)PES(0.003)DRPR ;;;;; 158.29 9.80E-09 39927470000 3099690 4396480 4377020 3479360 5480420 4227680 5566270 6025920 4041660 4605590 TRUE FALSE FALSE 3789205.347 4910610.092 5996261.841 3669428.627 4934770.142 4449034.788 4376990.942 4548053.672 4852784.09 3457501.173 1.095937545 1.420277202 1.734276155 1.061294977 1.427264922 1.286777521 1.265940552 1.315416379 1.403552406 1 21.72129831 -10.99698202 2.861246563 0.667245778 1.339513548 0.239176072 0.1787935 64608291.24 68282903.49 141808259.3 0.043772858 1.01E-11 10.99698202 0.67226777 HLDRS(ph)PESDRPR ddPTM_HeLa_A486_30min_R1 6 HLDRSPESDRPR 12 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(0.954)PES(0.046)DRPR;HLDRS(1)PESDRPR;HLDRS(1)PESDRPR;HLDRS(0.999)PES(0.001)DRPR ;;;;; 156.49 2.04E-08 38337120000 3294507 3433986 3277098 1347328 4607616 3507268 3984740 4169514 3107876 3528990 TRUE FALSE FALSE 3063579.072 3161864.443 4546078.109 3136647.674 4029685.837 3074576.933 2987715.906 3220206.682 3377269.194 2645307.934 1.158118128 1.195272733 1.718544012 1.185740092 1.523333365 1.162275625 1.12943974 1.217327722 1.276701722 1 21.33500424 -6.305233254 24.21760049 1.169000001 1.357921251 0.24840552 0.172493072 505.8835458 279747.0781 0.060246701 0.053133016 4.95E-07 6.305233254 0.188921249 HLDVDLDRQS(ph)LS(ph)SIDKNPS(ph)ER ddPTM_HeLa_A486_30min_R1 1 HLDVDLDRQSLSSIDKNPSER 21 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 3 0 HLDVDLDRQS(0.858)LS(0.883)S(0.259)IDKNPS(1)ER 71.085 0.0057288 160550000 165370 180820 88864 109290 137630 187790 230570 216200 134680 295030 TRUE FALSE FALSE 153778.417 166491.1647 123274.5207 254432.6432 120367.1621 164622.3791 172878.9473 166975.9796 146354.1708 221152.5677 0.695349905 0.752833966 0.557418446 1.15048469 0.544272053 0.744383757 0.78171802 0.755026186 0.661779207 1 17.75468247 -10.43328963 5.485528474 1.000201141 0.741645171 0.197389294 0.158267111 0.000368346 3.81E-05 0.144980978 0.035135925 3.69E-11 10.43328963 -0.25855597 HLDVDLDRQS(ph)LSSIDKNPSER ddPTM_HeLa_A485_30min_R1 2 HLDVDLDRQSLSSIDKNPSER 21 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 HLDVDLDRQS(0.79)LS(0.184)S(0.025)IDKNPSER;HLDVDLDRQS(0.993)LS(0.006)S(0.001)IDKNPSER ; 198.99 9.47E-27 644210000 482920 435520 419870 631750 604570 460740 613120 543980 525270 870060 TRUE FALSE FALSE 590343.8879 486450.2755 575197.3852 666260.9028 544376.888 484863.634 482121.9033 410568.0521 630686.8709 653170.0543 0.903813462 0.744752875 0.880624244 1.020042022 0.833438221 0.742323735 0.738126159 0.62857758 0.965578362 1 19.31709912 -5.998895027 24.9981733 0.787015724 0.882909692 0.051277711 0.120445797 83.22746767 1882791.573 0.037194148 0.041842785 1.00E-06 5.998895027 0.095893968 HLDVPDIIITPPT(ph)PTGMMLPR ddPTM_HeLa_A485_30min_R1 2 HLDVPDIIITPPTPTGMMLPR 21 0 R4GN89;R4GMY0;Q96GX8 R4GN89 C16orf74 Uncharacterized protein C16orf74 1 0 HLDVPDIIIT(0.001)PPT(0.839)PT(0.159)GMMLPR;HLDVPDIIITPPT(0.856)PT(0.144)GMMLPR ; 114.4 7.36E-05 174682000 60694 58924 40759 64278 45719 66772 83250 78356 52046 120382 TRUE FALSE FALSE 74195.17091 65814.64923 55837.45022 67789.34438 41167.05583 70268.07867 65462.95741 59139.06814 62491.15481 90372.98287 0.820988403 0.728255803 0.617855563 0.750106306 0.455523925 0.777534131 0.724364244 0.654388804 0.691480494 1 16.46360392 -10.2169443 2.913086239 1.001635585 0.687338868 0.48053751 0.096255476 5349507.632 6976923.499 79312.85201 0.024524138 6.07E-11 10.2169443 -0.314296716 HLDVPDIIITPPT(ph)PTGMMLPR ddPTM_HeLa_A486_30min_R1 2 HLDVPDIIITPPTPTGMMLPR 21 0 R4GN89;R4GMY0;Q96GX8 R4GN89 C16orf74 Uncharacterized protein C16orf74 1 0 HLDVPDIIITPPT(0.865)PT(0.135)GMMLPR;HLDVPDIIIT(0.002)PPT(0.875)PT(0.123)GMMLPR ; 141.22 2.99E-08 132111000 54377 59087 55871 20803.7 75096 59988 53932 53000 72445 79309 TRUE FALSE FALSE 50565.4531 54404.73093 77505.74748 48432.06496 65676.75944 52587.29047 40437.64317 40933.05698 78724.59093 59449.51019 0.850561307 0.915141786 1.303723903 0.814675593 1.104748538 0.884570627 0.680201452 0.688534806 1.324226065 1 15.8593773 -6.382285594 11.29389152 0.880955444 0.999965869 0.023468159 0.213327821 1.58173775 140.2893261 0.074958277 0.066086532 4.15E-07 6.382285594 0.119010425 HLEAADKGHS(ph)PAQKPK ddPTM_HeLa_A485_30min_R1 1 HLEAADKGHSPAQKPK 16 2 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LPI0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 HLEAADKGHS(1)PAQKPK 240.46 7.06E-42 1043500000 754280 555700 286100 1215200 797540 756860 1350200 1453500 606260 1837500 TRUE FALSE FALSE 922066.9838 620684.2811 391940.2956 1281583.299 718134.1173 796488.0193 1061718.74 1097026.846 727930.8211 1379445.067 0.668433275 0.449952155 0.284128962 0.929057148 0.520596387 0.577397418 0.76967091 0.795266787 0.527698303 1 20.39565658 -14 0.097702274 2.247807662 0.337667065 0.332344675 0.172743481 220.2025008 1.468541337 56.07859484 3.153293864 1.00E-14 14 -1.910140597 HLEAADKGHS(ph)PAQKPK ddPTM_HeLa_A486_30min_R1 1 HLEAADKGHSPAQKPK 16 2 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LPI0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 HLEAADKGHS(1)PAQKPK 199.7 1.59E-25 1756800000 2311200 1469300 495290 1121000 1329600 2068600 2717300 2514800 1396900 3330800 TRUE FALSE FALSE 2149196.815 1352867.317 687079.5523 2609744.652 1162829.17 1813397.164 2037402.799 1942234.938 1517984.417 2496746 0.860799142 0.541852202 0.275190008 1.045258369 0.465737872 0.726304223 0.816023256 0.777906498 0.60798512 1 21.25161763 -14 0.153228456 2.187692914 0.579096472 0.177244639 0.207383826 225.369254 2.027337775 81.11716632 0.976654237 1.00E-14 14 -1.608596442 HLEFSHDQYR ddPTM_HeLa_A485_30min_R1 4 HLEFSHDQYR 10 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 0 ;;; ;;; 192.38 8.61E-10 719683200 18771.5 42905.9 37918.5 20027.1 34558.8 27164.8 22857.6 30938.9 29674.1 20538.1 FALSE FALSE TRUE 22947.15541 47923.37177 51946.13107 21121.12976 31118.00453 28587.10692 17973.88703 23351.08626 35629.41968 15418.32965 1.488303593 3.108207755 3.369115349 1.369871461 2.018247452 1.854098828 1.165748005 1.514501687 2.310848224 1 13.91235886 -5.275408441 24.75674782 1.635522594 2.70050882 0.400965285 0.586754427 659.8148948 1169359.263 0.164274317 0.245065679 5.30E-06 5.275408441 1.064986226 HLEFSHDQYR ddPTM_HeLa_A486_30min_R1 4 HLEFSHDQYR 10 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 0 ;;; ;;; 228.64 4.57E-17 838910000 28639.5 25931.8 20273.4 5064.93 32671.2 24066.9 21542.7 22584.9 23075.4 26046.5 FALSE FALSE TRUE 26632.01894 23876.86973 28123.80342 11791.41301 28573.27345 21097.77057 16152.4886 17442.81129 25075.59425 19524.28687 1.364045669 1.22293172 1.440452274 0.603935657 1.463473347 1.080591098 0.82730236 0.893390443 1.284328305 1 14.25298223 -5.157401816 19.87363027 1.029362543 1.330533984 0.291688196 0.228491498 9.211971342 1751.472922 0.06076176 0.10524326 6.96E-06 5.157401816 0.301171441 HLEINPDHPIVETLR ddPTM_HeLa_A485_30min_R1 6 HLEINPDHPIVETLR 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;; ;;;;; 264.03 2.73E-50 3279342000 685202 855268 862199 773241 1090822 755350 985967 992972 786947 998737 FALSE FALSE TRUE 837622.821 955284.1528 1181162.289 815481.1979 982215.9316 794898.958 775307.0958 749444.0601 944880.0446 749770.2463 1.117172661 1.27410251 1.575365647 1.08764145 1.310022552 1.060190054 1.034059566 0.999564952 1.260226115 1 19.51608905 -6.265172892 24.66471374 1.06848415 1.279445785 0.338347554 0.141107154 319.7583251 2112411.669 0.048884389 0.044766856 5.43E-07 6.265172892 0.210961635 HLEINPDHPIVETLR ddPTM_HeLa_A486_30min_R1 6 HLEINPDHPIVETLR 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;; ;;;;; 223.76 2.17E-33 2401040000 1113306 1197094 940875 399184 1462830 1116428 1293328 1204635 1042044 1176854 FALSE FALSE TRUE 1035268.999 1102231.912 1305206.998 929320.5256 1279348.221 978694.4644 969723.655 930365.9075 1132369.213 882162.0984 1.173558692 1.249466412 1.479554608 1.05345778 1.450241654 1.109427016 1.099257899 1.054642802 1.283629409 1 19.75068425 -6.388375583 23.00462956 1.112157172 1.278068685 0.293081787 0.133377303 10.59255467 1884.424586 0.044626531 0.039356848 4.09E-07 6.388375583 0.165911514 HLEINPDHSIIETLR ddPTM_HeLa_A485_30min_R1 6 HLEINPDHSIIETLR 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;;;; ;;;;; 254.72 6.40E-50 1374292000 544742 654561 672718 622446 853390 598837 764757 798265 667673 806086 FALSE FALSE TRUE 665917.9786 731106.215 921584.3823 656448.6489 768423.4952 630191.1793 601360.4195 602489.2571 801668.8468 605143.5951 1.10042969 1.208153273 1.52291851 1.084781619 1.269820091 1.041391142 0.993748301 0.995613706 1.324758046 1 19.206918 -6.261872917 24.99942359 1.06599347 1.243009057 0.248490363 0.144131904 56.8459623 3277848.997 0.049440909 0.046320088 5.47E-07 6.261872917 0.177015587 HLEINPDHSIIETLR ddPTM_HeLa_A486_30min_R1 6 HLEINPDHSIIETLR 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;;;; ;;;;; 266.45 3.67E-50 1166715000 570979 625441 529585 221989.1 745510 577021 623585 649849 514475 594608 FALSE FALSE TRUE 530956.3206 575878.7773 734654.4948 516801.8435 652001.1842 505834.0157 467557.4374 501892.5688 559070.1072 445714.2866 1.191248153 1.292035716 1.648263286 1.159491313 1.462823167 1.134884008 1.049007069 1.126041018 1.254323956 1 18.76575968 -6.339706967 7.350044459 1.115315608 1.353120145 0.409752897 0.142813328 0.29318364 24.21932863 0.049869411 0.043935638 4.57E-07 6.339706967 0.237804537 HLEQAICINNK(ac)TLTTEEEK(ac)VLGK ddPTM_HeLa_A486_30min_R1 1 HLEQAICINNKTLTTEEEKVLGK 23 2 Q9Y2H8 Q9Y2H8 ZNF510 Zinc finger protein 510 0 2 HLEQAICINNK(1)TLTTEEEK(1)VLGK 62.684 0.021055 10540000 3417.3 7185.4 5076.8 3113.9 10079 8160.1 8947.9 9242 7321 7611.3 FALSE TRUE FALSE 3177.764917 6616.002735 7042.672921 7249.316568 8814.797837 7153.389828 6709.040779 7137.798351 7955.590175 5705.380939 0.556976817 1.159607537 1.234391357 1.270610437 1.544997246 1.253797057 1.175914606 1.25106429 1.394401226 1 12.4781075 -4.168980788 2.099310059 1.28278833 0.231995936 0.715352332 0.133025338 0.491963872 1.957392666 0.034901163 1.064076945 6.78E-05 4.168980788 -1.050792395 HLETSFQQTDPCCTSDAQPHAFLLSGPAS(ph)PGTSSAASSPLKK ddPTM_HeLa_A485_30min_R1 1 HLETSFQQTDPCCTSDAQPHAFLLSGPASPGTSSAASSPLKK 42 1 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 HLETSFQQTDPCCTSDAQPHAFLLS(0.209)GPAS(0.772)PGT(0.012)S(0.004)S(0.001)AASSPLKK 73.765 0.00061804 185460000 39156 28540 30471 38324 52319 32167 54478 59733 38654 56573 TRUE FALSE FALSE 47866.11711 31877.50474 41743.4909 40417.54308 47109.93666 33851.21438 42838.33026 45083.38809 46411.50324 42470.39225 1.12704674 0.75058183 0.982884515 0.951663993 1.109241854 0.797054432 1.0086634 1.061525117 1.092796671 1 15.37416981 -6.994718275 24.99787862 1.053315414 0.948146258 0.135439203 0.11202921 257.7224146 1219770.334 0.045222895 0.030372587 1.01E-07 6.994718275 -0.105169156 HLFS(ph)STENLAAGSWK ddPTM_HeLa_A485_30min_R1 2 HLFSSTENLAAGSWK 15 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.333)S(0.333)T(0.333)ENLAAGSWK;HLFS(0.333)S(0.333)T(0.333)ENLAAGSWK ; 170.5 2.41E-12 141924000 216012 201302 158095 237649 223894 182590 248776 199862 172983 326239 TRUE FALSE FALSE 264063.1242 224842.5178 216580.9194 250631.1631 201602.3272 192150.1301 195622.9753 150845.5311 207699.1014 244913.6213 1.078188803 0.918048235 0.884315532 1.023345136 0.823156859 0.784562855 0.798742733 0.615913196 0.848050428 1 17.90191349 -5.881661879 5.339357162 0.786840373 0.964624643 0.37233831 0.10186874 0.209062288 8.9460217 0.031068017 0.035504195 1.31E-06 5.881661879 0.17778427 HLFS(ph)STENLAAGSWK ddPTM_HeLa_A486_30min_R1 3 HLFSSTENLAAGSWK 15 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.372)S(0.256)T(0.372)ENLAAGSWK;HLFS(0.333)S(0.333)T(0.333)ENLAAGSWK;HLFS(0.333)S(0.333)T(0.333)ENLAAGSWK ;; 232.84 8.82E-35 1125949000 1509644 1747158 1056486 412636.9 1267126 1647049 1653040 1508441 1603664 1615343 TRUE FALSE FALSE 1403825.751 1608706.837 1465585.673 960639.5567 1108191.242 1443852.84 1239431.908 1165001.913 1742670.887 1210850.599 1.159371563 1.328575828 1.210376965 0.793359278 0.915217156 1.192428564 1.023604324 0.962135143 1.439212144 1 20.20758944 -5.02532803 24.72355126 1.041345804 1.25034944 0.206746747 0.167697431 909.7069027 887996.4435 0.045628244 0.079481366 9.43E-06 5.02532803 0.209003636 HLFS(ph)STENLAAGSWKEPAEGGGLSSDR ddPTM_HeLa_A485_30min_R1 1 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.387)S(0.306)T(0.306)ENLAAGSWKEPAEGGGLSSDR 168.88 4.14E-14 295260000 199080 216660 188410 221450 294520 244810 391660 404770 225220 343700 TRUE FALSE FALSE 243364.6592 241996.5023 258110.6994 233547.2528 265196.5547 257627.8731 307978.6414 305499.5228 270419.5882 258021.9153 0.943193755 0.937891272 1.000344095 0.905145024 1.027806318 0.998472834 1.193614275 1.184006105 1.048048914 1 17.97713408 -6.61587468 5.60060066 1.121182366 0.965199812 0.535742442 0.062752774 0.149231071 7.239107294 0.024072209 0.018496843 2.42E-07 6.61587468 -0.155982554 HLFS(ph)STENLAAGSWKEPAEGGGLSSDR ddPTM_HeLa_A486_30min_R1 3 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.385)S(0.307)T(0.307)ENLAAGSWKEPAEGGGLSSDR;HLFS(0.382)S(0.309)T(0.309)ENLAAGSWKEPAEGGGLSSDR;HLFS(0.532)S(0.399)T(0.069)ENLAAGSWKEPAEGGGLSSDR ;; 278.57 2.90E-77 1221110000 1115470 1256020 1059170 361509 1676900 1460790 1781820 1727990 1225110 1467240 TRUE FALSE FALSE 1037281.313 1156488.401 1469308.99 841611.2217 1466567.566 1280572.582 1335989.79 1334564.399 1331303.521 1099833.554 0.943125721 1.051512201 1.335937592 0.765216899 1.333445011 1.164333073 1.214719978 1.213423971 1.210459089 1 20.06885378 HLFSS(ph)TENLAAGSWK ddPTM_HeLa_A485_30min_R1 1 HLFSSTENLAAGSWK 15 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.003)S(0.989)T(0.007)ENLAAGSWK 218.57 1.68E-33 183940000 196840 150760 126320 217530 157090 158910 214920 170350 142530 297280 TRUE FALSE FALSE 240626.3789 168390.0706 173051.0246 229413.1131 141449.568 167230.2819 169000.5863 128571.3954 171134.4636 223173.567 1.078202863 0.754525156 0.77541004 1.027958266 0.633809684 0.749328355 0.757260766 0.576104944 0.766822281 1 17.76780664 -5.771758479 24.99694103 0.726633619 0.888444599 0.23082541 0.139734077 298.6159718 723363.9378 0.041618386 0.047704766 1.69E-06 5.771758479 0.161810981 HLFSS(ph)TENLAAGSWK ddPTM_HeLa_A486_30min_R1 1 HLFSSTENLAAGSWK 15 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.002)S(0.978)T(0.02)ENLAAGSWK 194.58 1.43E-18 211440000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR ddPTM_HeLa_A485_30min_R1 3 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.087)S(0.457)T(0.457)ENLAAGSWKEPAEGGGLSSDR;HLFS(0.173)S(0.414)T(0.414)ENLAAGSWKEPAEGGGLSSDR;HLFS(0.095)S(0.893)T(0.012)ENLAAGSWKEPAEGGGLSSDR ;; 221.23 1.96E-38 1193720000 271081 273284 269720 304646 408970 384817 555599 618445 310465 544898 TRUE FALSE FALSE 331382.0332 305242.1865 369500.652 321288.0396 368251.5108 404965.4231 436890.7348 466770.3941 372772.4777 409064.9567 0.810096362 0.746194905 0.903281119 0.78542059 0.900227469 0.989978282 1.068022884 1.141066685 0.911279423 1 18.64197043 -6.163094236 2.032337057 1.040755978 0.812084476 0.692597351 0.066281465 0.178061679 1.448122316 0.025173857 0.024725084 6.87E-07 6.163094236 -0.228671502 HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR ddPTM_HeLa_A486_30min_R1 1 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.142)S(0.827)T(0.03)ENLAAGSWKEPAEGGGLSSDR 283.71 1.53E-77 998820000 469770 511660 395750 134880 694580 592690 693280 684700 465520 601120 TRUE FALSE FALSE 436841.5489 471114.1982 548994.9986 314007.4565 607459.2997 519569.9338 519814.0112 528808.7569 505871.6484 450595.6394 0.969475758 1.045536523 1.218376191 0.696871938 1.348125118 1.153073595 1.153615272 1.173577174 1.1226732 1 18.78147383 -5.797005 24.99998744 1.166672768 1.003905073 0.258977475 0.143607141 256.5497075 180334.0639 0.042942459 0.048693875 1.60E-06 5.797005 -0.162767695 HLFSST(ph)ENLAAGSWK ddPTM_HeLa_A485_30min_R1 1 HLFSSTENLAAGSWK 15 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.288)S(0.288)T(0.423)ENLAAGSWK 194.27 2.05E-18 595200000 786620 700940 537690 873580 680120 589170 827210 668000 603360 1181800 TRUE FALSE FALSE 961600.9052 782908.8356 736603.9061 921301.4634 612404.8648 620018.0302 650469.8258 504171.9526 724448.8177 887199.0094 1.083861563 0.882450079 0.830257809 1.038438336 0.690267751 0.698848876 0.733172399 0.5682738 0.816557289 1 19.75889823 -5.771004435 24.97472927 0.726082744 0.944123665 0.388602651 0.124653796 186.4220025 486753.7713 0.036836587 0.042300377 1.69E-06 5.771004435 0.218040921 HLGGSGSVVPGS(ph)PCLDR ddPTM_HeLa_A485_30min_R1 1 HLGGSGSVVPGSPCLDR 17 0 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 HLGGSGSVVPGS(1)PCLDR 83.776 0.001481 309290000 149500 204400 193560 102240 251550 148990 217660 194970 169590 187050 TRUE FALSE FALSE 182755.7592 228302.802 265165.8987 107825.1123 226504.7988 156790.886 171155.1629 147153.3018 203625.1574 140421.8774 1.301476398 1.625834992 1.888351756 0.76786548 1.613030697 1.116570216 1.218863941 1.047937149 1.450095677 1 17.0994082 -5.24878572 24.98832903 1.193312131 1.607282414 0.370275775 0.257101864 836.5615108 1652031.285 0.066583696 0.114341159 5.64E-06 5.24878572 0.413970283 HLGVCISVANNR ddPTM_HeLa_A485_30min_R1 1 HLGVCISVANNR 12 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 132.32 0.00027104 51998000 49195 57523 55332 41572 69153 51353 73063 76448 46762 61451 FALSE FALSE TRUE 60138.25803 64249.81447 75801.60936 43842.97309 62267.88451 54041.76367 57452.49318 57699.00813 56146.70447 46132.39662 1.303601426 1.392726569 1.643131832 0.95037276 1.349764787 1.171449299 1.245382798 1.250726439 1.217077555 1 15.49349262 -1.000000012 0.030984598 2.68E-08 3.109631525 0.289147955 0.157110992 1666.930182 3.966924255 125.0946269 311.9863123 0.099999997 1.000000012 3.109631498 HLGVCISVANNR ddPTM_HeLa_A486_30min_R1 2 HLGVCISVANNR 12 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 151.07 5.31E-05 89065000 82767 88337 86006 32046 111195 82242 102312 94441 91143 89618 FALSE FALSE TRUE 76965.46071 81336.8544 119309.8265 74604.70752 97247.88625 72095.81822 76712.45545 72938.84593 99043.34862 67177.06948 1.145710304 1.21078301 1.776049885 1.110568057 1.447635138 1.073220651 1.14194406 1.085769988 1.474362448 1 16.03568124 -6.264965785 24.95901843 1.159600344 1.342757784 0.157648255 0.211345692 607.2344436 4297837.336 0.072054551 0.066129258 5.43E-07 6.264965785 0.18315744 HLILVVNYSCPNHYEDYVHR ddPTM_HeLa_A485_30min_R1 1 HLILVVNYSCPNHYEDYVHR 20 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 0 237.21 1.13E-37 63897000 26448 39247 33524 22970 35144 23822 37692 35674 23735 37467 FALSE FALSE TRUE 32331.26636 43836.59525 45925.92265 24224.79294 31644.93996 25069.28308 29638.79628 26924.89557 28498.39679 28127.16643 1.149467595 1.558514447 1.632795922 0.861259629 1.125066759 0.891283633 1.0537427 0.957255884 1.013198285 1 14.7796766 -5.264939102 24.99993508 0.988865396 1.458084841 0.705438919 0.136431408 153.5095664 1096582.791 0.03707744 0.057601102 5.43E-06 5.264939102 0.469219445 HLILVVNYSCPNHYEDYVHR ddPTM_HeLa_A486_30min_R1 2 HLILVVNYSCPNHYEDYVHR 20 0 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 0 ; ; 212.76 1.75E-29 115334000 21753 15622.9 21069 10914.8 30776 18073.7 23477 24151 16581.1 25778 FALSE FALSE TRUE 20228.22703 14384.88451 29227.48105 25410.206 26915.78711 15843.95065 17602.80629 18652.34451 18018.3631 19323.02101 1.046845988 0.744442833 1.512573061 1.315022428 1.392938873 0.819952048 0.910975891 0.965291323 0.93248168 1 14.23803305 -6.273115277 24.9521824 0.922648125 1.200417109 0.324704242 0.199428735 993.6374756 2123464.736 0.075892202 0.067479008 5.33E-07 6.273115277 0.277768984 HLIVLINK ddPTM_HeLa_A485_30min_R1 1 HLIVLINK 8 0 P15170-2;P15170-3;H3BR35;P15170;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 0 134.44 0.0065805 0 134280 160730 132930 151020 213470 161910 218790 246810 136320 222710 FALSE FALSE TRUE 164150.1227 179525.9753 182106.3387 159269.8402 192216.1773 170387.3572 172043.7292 186279.4605 163678.1736 167192.4957 0.981803173 1.073768141 1.089201629 0.95261357 1.149669885 1.019108881 1.029015857 1.114161612 0.978980384 1 17.35115057 -4.24729904 23.518579 1.049166603 0.981803066 0.091363374 0.058744164 2472.069046 4111446.457 0.013581512 0.260107579 5.66E-05 4.24729904 -0.067363536 HLIVLINK ddPTM_HeLa_A486_30min_R1 2 HLIVLINK 8 0 P15170-2;P15170-3;H3BR35;P15170;Q8IYD1 P15170-2 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 0 ; ; 135.35 0.006114 0 163530 163177 115677 60267 171985 160289 196888 192184 151615 223740 FALSE FALSE TRUE 152067.3915 150246.2602 160470.2323 140304.6217 150413.0376 140514.1729 147624.5399 148427.8985 164757.1103 167714.0477 0.906706347 0.895847798 0.956808535 0.836570482 0.896842212 0.837819937 0.880215712 0.885005762 0.982369173 1 17.35564401 -7.79812904 4.669356376 0.997461178 0.886101424 0.624102484 0.032430105 0.128598892 6.083176834 0.030325618 0.008361634 1.59E-08 7.79812904 -0.111359754 HLK(ac)TKPSDEEMLFIYGHYK ddPTM_HeLa_A486_30min_R1 2 HLKTKPSDEEMLFIYGHYK 19 2 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5;P07108-6 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; HLK(0.974)TK(0.026)PSDEEMLFIYGHYK;HLK(0.994)TK(0.006)PSDEEMLFIYGHYK 214.19 4.44E-29 19486100 36727 25502 17564.6 13611.9 32262 34049 36762 34966 24150 41878 FALSE TRUE FALSE 34152.62696 23481.12864 24366.08352 31689.19111 28215.39913 29848.38056 27563.75877 27005.0051 26243.34144 31391.47622 1.087958614 0.748009698 0.776200627 1.00948394 0.898823583 0.950843482 0.87806507 0.860265536 0.836002145 1 14.93808525 -5.251280783 24.96994257 0.912018708 0.858451668 0.039402195 0.100083725 2354.484239 5787334.457 0.026936808 0.04601346 5.61E-06 5.251280783 -0.05356704 HLLIGVSSDR ddPTM_HeLa_A485_30min_R1 2 HLLIGVSSDR 10 0 P36542-2;P36542 P36542-2 ATP5C1 "ATP synthase subunit gamma, mitochondrial" 0 0 ; ; 103.26 0.0031009 55662000 22463 29865 24540 20862 30229 27561 32651 31518 26197 36541 FALSE FALSE TRUE 27459.81685 33357.45196 33618.36719 22001.63823 27219.29462 29004.05134 25674.84712 23788.16108 31454.49761 27432.00119 1.001013986 1.216005049 1.225516395 0.802042771 0.992246043 1.057307163 0.935945101 0.867168273 1.14663518 1 14.74357225 -5.241552602 24.99791084 0.969029162 1.154361139 0.36527513 0.106098158 843.7675927 1060624.355 0.028268368 0.048877113 5.73E-06 5.241552602 0.185331977 HLLIGVSSDR ddPTM_HeLa_A486_30min_R1 1 HLLIGVSSDR 10 0 P36542-2;P36542 P36542-2 ATP5C1 "ATP synthase subunit gamma, mitochondrial" 0 0 110.38 0.0023208 20508000 14885 15256 13239 2445.2 17454 14175 13980 13726 16359 13902 FALSE FALSE TRUE 13841.63837 14047.059 18365.49535 5692.549174 15264.75657 12426.23262 10482.05613 10600.88944 17777.01129 10420.84871 1.328264016 1.347976483 1.76238 0.546265408 1.464828536 1.192439595 1.005873554 1.017276973 1.705908202 1 13.34718516 -5.200791594 24.99999097 1.144917089 1.466383263 0.207712952 0.309036508 410.9927687 169416.648 0.080894189 0.140112812 6.30E-06 5.200791594 0.321466174 HLLNS(ph)PTDPFNR ddPTM_HeLa_A485_30min_R1 5 HLLNSPTDPFNR 12 0 O95155;O95155-4;O95155-2;O95155-3 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 HLLNS(0.999)PT(0.001)DPFNR;HLLNS(1)PTDPFNR;HLLNS(1)PTDPFNR;HLLNS(1)PTDPFNR;HLLNS(0.973)PT(0.027)DPFNR ;;;; 168.69 1.27E-10 1081799000 727295 960252 911655 808380 1181009 855972 1074202 1212255 826754 1064635 TRUE FALSE FALSE 889079.2636 1072545.118 1248914.122 852539.7525 1063423.597 900789.3703 844689.9673 914947.5605 992675.9444 799241.0877 1.112404351 1.34195443 1.562625021 1.066686593 1.330541702 1.127055884 1.056865044 1.144770426 1.242023164 1 19.60827123 -6.018139379 1.354774663 1.118618408 1.312983952 0.243690487 0.141500097 0.619382031 2.344435436 0.060794497 0.06746748 9.59E-07 6.018139379 0.194365543 HLLNS(ph)PTDPFNR ddPTM_HeLa_A486_30min_R1 2 HLLNSPTDPFNR 12 0 O95155;O95155-4;O95155-2;O95155-3 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 HLLNS(1)PTDPFNR;HLLNS(1)PTDPFNR ; 159.4 5.38E-09 655240000 486460 486460 383580 146386 538340 429350 485390 512790 414370 496080 TRUE FALSE FALSE 452361.6661 447911.1379 532112.4486 340794.0059 470816.3774 376381.1623 363940.2881 396038.9111 450287.9252 371858.3391 1.216489234 1.204520891 1.430954729 0.916461916 1.266117572 1.012162759 0.978706808 1.0650263 1.210912538 1 18.5043936 -5.261739673 24.99999973 1.069590716 1.276041539 0.435240416 0.11450959 26.723589 2224862.494 0.031107584 0.049656629 5.47E-06 5.261739673 0.206450824 HLLNVINENFGTLAFCR ddPTM_HeLa_A486_30min_R1 1 HLLNVINENFGTLAFCR 17 0 F8VQZ7;P50579-3;P50579-2;P50579;F8VRR3 F8VQZ7 METAP2 Methionine aminopeptidase 2 0 0 247.46 2.92E-34 15018000 7548.9 13150 11178 6074.7 15218 12747 13362 13096 11519 13119 FALSE FALSE TRUE 7019.761093 12107.94611 15506.42096 14142.2086 13309.21654 11174.40474 10018.68627 10114.32668 12517.47619 9833.91701 0.713831639 1.231243471 1.576830569 1.438105343 1.353399314 1.136312695 1.018788979 1.028514546 1.272888126 1 13.26355046 -6.418526411 4.97330352 1.081729195 1.287162908 0.128374017 0.222089525 0.468491786 17.88958908 0.085249007 0.074177669 3.81E-07 6.418526411 0.205433713 HLLS(ph)PQLVQYQCGDSGK ddPTM_HeLa_A485_30min_R1 4 HLLSPQLVQYQCGDSGK 17 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 0 HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK ;;; 321.1 1.26E-79 2650910000 1659440 1651250 1332710 2178510 2380990 2066920 2866300 2991310 1689340 2861980 TRUE FALSE FALSE 2028576.703 1844349.324 1825734.888 2297516.485 2143930.275 2175140.735 2253891.589 2257686.532 2028375.042 2148541.057 0.944164738 0.858419399 0.849755643 1.069337948 0.997853994 1.012380344 1.049033521 1.050799809 0.944070878 1 21.03492592 -5.257017574 24.99948016 1.020020716 0.881543868 0.694976478 0.040505361 198.6788096 1123262.603 0.010908974 0.018094977 5.53E-06 5.257017574 -0.138476847 HLLS(ph)PQLVQYQCGDSGK ddPTM_HeLa_A486_30min_R1 3 HLLSPQLVQYQCGDSGK 17 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 0 HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK ;; 340.25 4.10E-92 2974150000 1899400 1979550 1173840 786868 2028080 2100070 2543320 2470260 1608760 2443430 TRUE FALSE FALSE 1766261.869 1822683.249 1628382.285 1831868.47 1773699.295 1840984.715 1906954.436 1907835.723 1748208.612 1831579.224 0.964338231 0.995143003 0.889059159 1.000157922 0.968398894 1.005135181 1.041153127 1.041634289 0.954481569 1 20.80465667 -6.043572136 1.72713502 1.01342653 0.957575318 0.278811294 0.036182689 0.450626575 2.705838279 0.014085818 0.015065378 9.05E-07 6.043572136 -0.055851212 HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK ddPTM_HeLa_A485_30min_R1 3 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK ;; 111.04 0.00037166 184942000 109448 103818 87829 176215 146467 112649 189916 175400 100553 235539 TRUE FALSE FALSE 133794.33 115958.612 120320.602 185841.1793 131884.2312 118547.1275 149338.8951 132382.875 120733.0648 176823.4621 0.756654849 0.655787477 0.680456092 1.05099842 0.745852556 0.670426458 0.844564931 0.748672565 0.682788717 1 17.43195019 -11.15457134 2.376991892 1.554830634 0.76192249 0.296371535 0.111081643 13944997.2 2862938.698 41795202.51 0.028760287 7.01E-12 11.15457134 -0.792908143 HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK ddPTM_HeLa_A486_30min_R1 6 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK;HLLTDLPLPPELPGGDLS(1)PPDS(1)PEPK ;;;;; 131.1 5.71E-06 300070000 245824 218921 116840 144111 207164 245672 312153 293873 182665 384784 TRUE FALSE FALSE 228593.007 201572.9027 162083.5771 335497.691 181179.5594 215363.4864 234049.0178 226964.5331 198498.5493 288431.5819 0.792538062 0.698858639 0.561948092 1.163179458 0.628154373 0.746670961 0.811454197 0.7868921 0.688199773 1 18.13786962 -10.53719399 2.894517926 1.010684667 0.765613082 0.177034543 0.15248616 47166159.41 50446068.33 3946333.146 0.037425176 2.90E-11 10.53719399 -0.245071586 HLLTDLPLPPELPGGDLS(ph)PPDSPEPK ddPTM_HeLa_A485_30min_R1 2 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 HLLTDLPLPPELPGGDLS(1)PPDSPEPK;HLLTDLPLPPELPGGDLS(0.999)PPDS(0.001)PEPK ; 187.32 1.93E-20 443600000 97746 104528 80619 165281 143847 136938 219820 212404 123934 281090 TRUE FALSE FALSE 119489.2605 116751.6403 110443.3229 174309.8825 129525.0876 144107.8619 172853.6612 160311.586 148806.417 211019.4361 0.566247653 0.553274345 0.52337986 0.826037098 0.613806434 0.682912743 0.819136211 0.75970057 0.705178726 1 17.68701636 -7.747645275 0.069310453 1.564462041 1.42E-13 0.691363118 0.078911142 13.57700592 0.81461372 9.300730696 8.426893665 1.79E-08 7.747645275 -1.564462041 HLLTDLPLPPELPGGDLS(ph)PPDSPEPK ddPTM_HeLa_A486_30min_R1 4 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 HLLTDLPLPPELPGGDLS(0.999)PPDS(0.001)PEPK;HLLTDLPLPPELPGGDLS(1)PPDSPEPK;HLLTDLPLPPELPGGDLS(0.819)PPDS(0.181)PEPK;HLLTDLPLPPELPGGDLS(0.999)PPDS(0.001)PEPK ;;; 171.19 4.05E-14 447604000 301928 266796 134889 138871.3 245148 302002 366362 359050 239632 449841 TRUE FALSE FALSE 280764.4064 245654.1133 187121.6333 323299.4046 214399.2519 264744.0638 274694.3526 277302.153 260403.4947 337197.8856 0.832639878 0.728516173 0.554931218 0.958782419 0.635826205 0.785129667 0.81463842 0.822372158 0.772257199 1 18.36323596 -10.65784603 0.247126574 1.223953358 0.7255624 0.324774728 0.103681436 28.73079782 1.235055687 4.040960042 0.167420121 2.20E-11 10.65784603 -0.498390958 HLMLPDFDLLEDIESK ddPTM_HeLa_A485_30min_R1 1 HLMLPDFDLLEDIESK 16 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 90.367 0.016 35536000 22827 22080 17911 30141 30660 27204 36243 39513 19289 38913 FALSE FALSE TRUE 27904.7874 24662.06393 24537.02424 31787.52651 27607.38275 28628.35937 28499.38697 29822.3748 23160.12537 29212.70524 0.955227774 0.844223899 0.839943581 1.08814046 0.945047113 0.979996859 0.975581917 1.020870014 0.792810018 1 14.83430834 -5.219807566 24.99784545 0.972034899 0.876240954 0.233624184 0.076259308 697.0391042 418536.4908 0.019958144 0.034568113 6.03E-06 5.219807566 -0.095793944 HLMLPDFDLLEDIESK ddPTM_HeLa_A486_30min_R1 1 HLMLPDFDLLEDIESK 16 0 P13010;C9JZ81 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 95.428 0.011757 29017000 30537 36411 18379 18525 46836 33257 43615 38890 20476 45853 FALSE FALSE TRUE 28396.51399 33525.65975 25495.84101 43127.1362 40961.39215 29154.08947 32702.06569 30035.59596 22250.87617 34371.11035 0.826173892 0.97540229 0.741781128 1.254749578 1.191738985 0.848214945 0.951440479 0.873861672 0.647371468 1 15.06890884 -7.079802199 1.807135609 0.818436386 0.987078668 0.11232817 0.167827973 0.778150516 4.884842375 0.115152731 0.053990692 8.32E-08 7.079802199 0.168642282 HLNEIDLFHCIDPNDSK ddPTM_HeLa_A485_30min_R1 2 HLNEIDLFHCIDPNDSK 17 0 A0A087WYT3;Q15185-4;Q15185;Q15185-3 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 0 ; ; 219.01 8.60E-34 371740000 221800 193182 156712 299314 289182 233729 377885 347103 204786 412190 FALSE FALSE TRUE 271138.6448 215772.9544 214686.2901 315664.7659 260390.0247 245966.689 297146.7827 261975.445 245884.6718 309438.6188 0.876227556 0.697304542 0.693792814 1.020120782 0.841491685 0.794880387 0.960276981 0.846615222 0.794615335 1 18.23929373 -14 0.038910903 1.709722246 0.410656033 0.206442038 0.096821752 1449.460672 4.207408369 124.6002758 38.63216852 1.00E-14 14 -1.299066212 HLNEIDLFHCIDPNDSK ddPTM_HeLa_A486_30min_R1 1 HLNEIDLFHCIDPNDSK 17 0 A0A087WYT3;Q15185-4;Q15185;Q15185-3 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 0 177.64 7.45E-13 91610000 101880 128840 77162 77771 150720 142400 183390 180730 111770 219670 FALSE FALSE TRUE 94738.73811 118630.2492 107041.1929 181054.8183 131815.2922 124832.1358 137503.8823 139581.7243 121458.3136 164663.2022 0.575348571 0.720441772 0.650061407 1.099546322 0.800514568 0.758105844 0.835061389 0.847680128 0.737616614 1 17.32915866 -5.118346393 20.02589359 0.85488373 0.655641397 0.458388612 0.108684957 4.113278637 679.2752838 0.029041015 0.050300864 7.61E-06 5.118346393 -0.199242333 HLPS(ph)PPLTQEVDLHSIAGPPVPPR ddPTM_HeLa_A485_30min_R1 2 HLPSPPLTQEVDLHSIAGPPVPPR 24 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 HLPS(1)PPLTQEVDLHSIAGPPVPPR;HLPS(1)PPLTQEVDLHSIAGPPVPPR ; 288.2 3.77E-76 1047780000 159983 221490 238590 166021 265890 187543 244020 283160 226789 232010 TRUE FALSE FALSE 195570.6664 247391.3288 326854.3696 175090.3068 239417.058 197362.4615 191883.1335 213714.566 272303.4721 174174.1768 1.122845361 1.420367435 1.876594886 1.00525985 1.374584122 1.133132736 1.101673836 1.227016369 1.563397497 1 17.41017122 -5.298649977 24.99994243 1.210483382 1.467979889 0.221902535 0.233311944 880.0401842 591253.2554 0.06559907 0.097301755 5.03E-06 5.298649977 0.257496507 HLPS(ph)PPLTQEVDLHSIAGPPVPPR ddPTM_HeLa_A486_30min_R1 1 HLPSPPLTQEVDLHSIAGPPVPPR 24 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 HLPS(1)PPLTQEVDLHSIAGPPVPPR 291.31 2.66E-89 396290000 114110 113820 102620 36633 144700 122010 129510 116500 97117 120170 TRUE FALSE FALSE 106111.4783 104800.4887 142357.2123 85283.47533 126550.3767 106957.6467 97105.22818 89975.49318 105535.1798 90078.64982 1.177986998 1.163433165 1.580365742 0.946766803 1.404887584 1.18738066 1.078004925 0.998854816 1.171589272 1 16.45889758 -6.672862307 3.713747331 1.060491364 1.254027523 0.241333319 0.16071626 0.337613878 9.000403575 0.063316201 0.046820389 2.12E-07 6.672862307 0.19353616 HLPS(ph)PPTLDSIITEYLR ddPTM_HeLa_A485_30min_R1 1 HLPSPPTLDSIITEYLR 17 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 0 HLPS(1)PPTLDSIITEYLR 292.75 1.86E-68 1466400000 1727700 2500400 2386900 1804300 2901100 2211700 2845800 3191600 2071700 2431200 TRUE FALSE FALSE 2112020.905 2792800.029 3269913.637 1902864.34 2612256.298 2327501.192 2237771.582 2408855.096 2487471.187 1825146.583 1.157178785 1.530178483 1.7915896 1.042581652 1.431258356 1.275240692 1.226077731 1.319814594 1.362888444 1 20.79958091 -13.35627974 0.136561835 8.04E-17 1.495538436 0.229276664 0.195733589 170.2325081 1.696913299 47.7699596 1.352824103 4.40E-14 13.35627974 1.495538436 HLPS(ph)PPTLDSIITEYLR ddPTM_HeLa_A486_30min_R1 1 HLPSPPTLDSIITEYLR 17 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 0 HLPS(1)PPTLDSIITEYLR 353.31 1.70E-105 3544000000 2964500 3152400 2580600 1143300 3276200 2490700 3310600 3029100 2588300 3251700 TRUE FALSE FALSE 2756703.859 2902592.343 3579877.431 2661660.179 2865268.447 2183422.758 2482252.864 2339440.055 2812655.928 2437453.155 1.130977165 1.190830001 1.46869589 1.091984137 1.175517339 0.895780398 1.018379721 0.959788725 1.153932301 1 21.21694306 -5.845094194 2.05934088 1.007637451 1.249015946 0.450516334 0.112690659 0.282071495 2.454477739 0.039000087 0.047576416 1.43E-06 5.845094194 0.241378495 HLQLAIR ddPTM_HeLa_A485_30min_R1 5 HLQLAIR 7 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-4;P16104;Q96QV6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P0C0S5;P16104;Q96QV6;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFZ;H2AFV;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.Z;Histone H2A.V;Histone H2AX;Histone H2A type 1-A;Histone H2A.J 0 0 ;;;; ;;;; 177.57 5.88E-05 4757290000 1649940 2092580 2079620 1863410 2456420 1735560 2401960 2274870 1704870 2677800 FALSE FALSE TRUE 2016963.461 2337289.028 2848957.978 1965203.37 2211850.2 1826431.238 1888761.624 1716954.566 2047021.771 2010273.741 1.003327765 1.162672018 1.417199021 0.977579983 1.100273139 0.908548523 0.939554442 0.854089933 1.018280112 1 20.93896054 -5.798447938 1.727611576 0.939117279 1.180729938 0.395254447 0.117980746 0.340965713 2.104527445 0.042666745 0.055126328 1.59E-06 5.798447938 0.241612659 HLQLAIR ddPTM_HeLa_A486_30min_R1 4 HLQLAIR 7 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-4;P16104;Q96QV6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P0C0S5;P16104;Q96QV6;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFZ;H2AFV;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.Z;Histone H2A.V;Histone H2AX;Histone H2A type 1-A;Histone H2A.J 0 0 ;;; ;;; 182.31 4.11E-05 4328320000 924477 975745 836467 362137 2134905 876567 1051042 968101 857003 1054611 FALSE FALSE TRUE 859675.9363 898423.4126 1160369.424 843073.2374 1867125.308 768425.0758 788060.1748 747685.5358 931288.7101 790529.5412 1.087468452 1.136483035 1.467838156 1.066466455 2.361866585 0.972038407 0.996876314 0.94580341 1.178056811 1 19.59245985 HLQLAIRNDEELNK ddPTM_HeLa_A485_30min_R1 2 HLQLAIRNDEELNK 14 1 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P16104;Q96QV6;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A.J 0 0 ; ; 230.26 1.93E-24 133484000 114997 219672 131061 81788 244017 284450 446030 665130 151162 187332 FALSE FALSE TRUE 140577.6859 245360.7295 179545.9178 86255.87134 219721.8107 299343.3622 350732.0468 502005.8246 181498.8269 140633.58 0.999602555 1.744680961 1.276693076 0.613337663 1.562370884 2.12853404 2.493942391 3.569601404 1.290579582 1 17.10158159 -6.194560939 3.170701308 2.296168764 1.201066232 0.256334594 0.712596548 0.301874472 5.990630277 0.248262222 0.241882997 6.39E-07 6.194560939 -1.095102533 HLQLAIRNDEELNK ddPTM_HeLa_A486_30min_R1 2 HLQLAIRNDEELNK 14 1 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P16104;Q96QV6;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A.J 0 0 ; ; 181.71 1.17E-10 73362000 108192 81753 64929 63065 143214 91325 157180 160921 62052 169821 FALSE FALSE TRUE 100608.2995 75274.59454 90071.24766 146818.5071 125250.7647 80058.25002 117851.9015 124282.8012 67430.71732 127296.7163 0.790344814 0.591331786 0.707569294 1.153356594 0.983927696 0.628910567 0.925804726 0.976323701 0.529712936 1 16.95783568 -5.032556363 24.9602138 0.883461601 0.680491212 0.191328651 0.178012869 958.9960447 735239.7197 0.048370826 0.083872111 9.28E-06 5.032556363 -0.202970389 HLQLAIRNDEELNKLLGK ddPTM_HeLa_A485_30min_R1 1 HLQLAIRNDEELNKLLGK 18 2 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A.J 0 0 150.45 4.03E-10 65034000 18157 55361 18322 12578 41471 83575 126440 335960 26519 26777 FALSE FALSE TRUE 22195.96201 61834.98737 25100.07024 13265.10429 37342.00163 87950.85777 99425.06108 253565.2832 31841.12005 20101.98669 1.10416758 3.076063491 1.248636298 0.659890213 1.857627417 4.375232115 4.946031583 12.61394145 1.583978765 1 14.29505047 -6.43885469 2.409490322 5.968858715 1.572131772 0.2100021 3.039599339 0.374014976 4.280090526 1.20328297 0.991503027 3.64E-07 6.43885469 -4.396726943 HLQLAIRNDEELNKLLGR ddPTM_HeLa_A485_30min_R1 1 HLQLAIRNDEELNKLLGR 18 2 Q93077;Q7L7L0;P04908 Q93077 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E 0 0 135.28 2.06E-07 12988000 7815.3 16746 13819 11466 21755 26418 33751 79257 12829 18848 FALSE FALSE TRUE 9553.786523 18704.29903 18931.22316 12092.35855 19588.99581 27801.20563 26539.82313 59819.09648 15403.66263 14149.54047 0.675201187 1.321901518 1.33793908 0.854611397 1.38442629 1.964813323 1.875666788 4.227635279 1.088633419 1 13.78846758 -6.326676979 1.97224459 2.30296527 1.086244628 0.207466778 0.859955827 0.43742733 3.347199136 0.344441267 0.301954371 4.71E-07 6.326676979 -1.216720643 HLQLSFQEPHFYLR ddPTM_HeLa_A485_30min_R1 2 HLQLSFQEPHFYLR 14 0 P85037 P85037 FOXK1 Forkhead box protein K1 0 0 ; ; 191.49 1.50E-11 28392000 18109.8 23283 25727 18790.4 27389 21637 29605 32761 18252.6 26891 FALSE FALSE TRUE 22138.26253 26005.74431 35244.48789 19816.87197 24662.05499 22769.87986 23279.6499 24726.31338 21915.7294 20187.56859 1.096628474 1.288205868 1.745851053 0.981637382 1.221645632 1.127915913 1.153167594 1.224828699 1.085605198 1 14.30117954 -5.330346506 24.99999921 1.12966504 1.368050194 0.337771466 0.167784952 203.9100457 73979.30259 0.047102525 0.069864341 4.67E-06 5.330346506 0.238385154 HLQLSFQEPHFYLR ddPTM_HeLa_A486_30min_R1 2 HLQLSFQEPHFYLR 14 0 P85037 P85037 FOXK1 Forkhead box protein K1 0 0 ; ; 184.76 7.10E-11 28773000 20091.7 29703 24089 8312.2 33090 26426 30782 29517 27136 31117 FALSE FALSE TRUE 18683.37558 27349.2261 33416.90593 19351.22168 28939.54365 23165.8288 23080.01802 22796.62345 29488.17033 23325.10066 0.800998712 1.17252339 1.432658594 0.829630789 1.240703912 0.993171654 0.989492751 0.977342983 1.264224783 1 14.50959569 HLQQGSES(ph)PMMIGELR ddPTM_HeLa_A485_30min_R1 4 HLQQGSESPMMIGELR 16 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 HLQQGSES(1)PMMIGELR;HLQQGSES(1)PMMIGELR;HLQQGSES(1)PMMIGELR;HLQQGSES(1)PMMIGELR ;;; 278.79 9.28E-59 1167690000 1147416 1291340 1139130 954836 1730370 875320 971050 924580 840430 916970 TRUE FALSE FALSE 1402654.731 1442350.98 1560541.59 1006996.273 1558088.287 921150.4017 763577.2348 697825.3053 1009096.592 688386.2546 2.0375984 2.095264062 2.266956349 1.462836113 2.263392502 1.338130149 1.109227893 1.013711852 1.46588719 1 19.39285876 -6.392506047 4.648352463 1.157232354 2.009157773 0.752293031 0.242365153 0.115534626 3.863705857 0.086003373 0.074993078 4.05E-07 6.392506047 0.851925419 HLQQGSES(ph)PMMIGELR ddPTM_HeLa_A486_30min_R1 4 HLQQGSESPMMIGELR 16 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 HLQQGSES(1)PMMIGELR;HLQQGSES(1)PMMIGELR;HLQQGSES(1)PMMIGELR;HLQQGSES(1)PMMIGELR ;;; 252.75 1.39E-50 1548750000 979130 967480 820640 240904 1127950 849280 918970 965520 789270 875310 TRUE FALSE FALSE 910498.0432 890813.3613 1138413.786 560836.6866 986471.9933 744504.4684 689033.9861 745692.1732 857684.5591 656126.6787 1.387686361 1.357685018 1.735051816 0.854768911 1.503477949 1.13469623 1.050153893 1.136506406 1.307193545 1 19.32361486 -5.256246777 24.99805216 1.157717721 1.479895439 0.418121967 0.189641422 452.2344834 2177125.116 0.050259215 0.083775123 5.54E-06 5.256246777 0.322177718 HLQVIFGHLAASR ddPTM_HeLa_A485_30min_R1 2 HLQVIFGHLAASR 13 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 0 ; ; 192.18 3.95E-11 40753000 7570.2 12745.7 11029.1 10702.7 13419.8 7746.9 13018.6 10307.2 8150.5 13774.4 FALSE FALSE TRUE 9254.164873 14236.19874 15109.22305 11287.3614 12083.67759 8152.515705 10237.06976 7779.343039 9786.230589 10340.69558 0.894926729 1.376715776 1.461141848 1.091547596 1.168555587 0.788391423 0.989978835 0.752303651 0.9463803 1 13.33604561 -6.070819538 2.545860529 0.885443766 1.237689997 0.449741574 0.164106167 0.248959832 3.184438573 0.058191566 0.060667575 8.50E-07 6.070819538 0.352246231 HLQVIFGHLAASR ddPTM_HeLa_A486_30min_R1 2 HLQVIFGHLAASR 13 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 0 ; ; 192.18 3.95E-11 33726000 9462 8914 8094.9 2645.73 9700.6 7386.1 11100.4 10551.5 8788.5 8373.5 FALSE FALSE TRUE 8798.762662 8207.622176 11229.46207 6159.393148 8483.860293 6474.878078 8322.962512 8149.153788 9550.294256 6276.721098 1.401808767 1.307628943 1.789065006 0.981307446 1.351638883 1.031570143 1.326004833 1.298313827 1.521541918 1 12.61579539 -5.269854571 24.99809539 1.230777464 1.480313716 0.294137163 0.199817029 846.9462227 2515930.07 0.054796387 0.082792722 5.37E-06 5.269854571 0.249536252 HLRPGGGS(ph)PHR ddPTM_HeLa_A485_30min_R1 4 HLRPGGGSPHR 11 1 H3BMY0;H3BQ06 H3BMY0 ATP6V0C 1 0 HLRPGGGS(1)PHR;HLRPGGGS(1)PHR;HLRPGGGS(1)PHR;HLRPGGGS(1)PHR ;;; 86.944 0.001919 62851700 30031.8 42757.7 39616.3 41677.6 49520 29432.7 55215.7 48069.8 40967.8 68257.8 TRUE FALSE FALSE 36712.2703 47757.84107 54272.01794 43954.34175 44589.61492 30973.75066 43418.41462 36280.60618 49189.66168 51242.38665 0.716443411 0.931998765 1.05912354 0.857773118 0.870170533 0.60445566 0.847314449 0.708019445 0.959940879 1 15.64505005 -4.239478572 22.81102067 0.858226429 0.716442918 0.109151571 0.127855883 4376.755481 4545966.26 0.033210836 1.341969453 5.76E-05 4.239478572 -0.141783511 HLRPGGGS(ph)PHR ddPTM_HeLa_A486_30min_R1 5 HLRPGGGSPHR 11 1 H3BMY0;H3BQ06 H3BMY0 ATP6V0C 1 0 HLRPGGGS(1)PHR;HLRPGGGS(1)PHR;HLRPGGGS(1)PHR;HLRPGGGS(1)PHR;HLRPGGGS(1)PHR ;;;; 87.498 0.0018727 79654200 41753.1 53499.4 45973.3 18712.02 65478 45086.3 58936.7 58028.2 54732.1 71004.1 TRUE FALSE FALSE 38826.4233 49259.9127 63775.39297 43562.52821 57265.13868 39524.01071 44190.11429 44816.44561 59476.3225 53224.2112 0.729487999 0.925517008 1.198240266 0.81847203 1.075922731 0.742594579 0.830263395 0.842031185 1.11746743 1 15.69979504 -7.761852234 24.99999659 1.058733736 0.902619917 0.177201598 0.140149552 20.29540028 1228258.47 0.112398514 0.035871793 1.73E-08 7.761852234 -0.156113819 HLRT(ph)PSTKPK ddPTM_HeLa_A485_30min_R1 1 HLRTPSTKPK 10 2 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 HLRT(0.894)PS(0.104)T(0.001)KPK 62.924 0.023841 739670000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 HLS(ph)ASTPK ddPTM_HeLa_A485_30min_R1 4 HLSASTPK 8 0 I3L2J0 I3L2J0 CIC 1 0 HLS(0.993)AS(0.007)TPK;HLS(0.983)AS(0.017)TPK;HLS(0.99)AS(0.01)TPK;HLS(0.998)AS(0.002)TPK ;;; 110.38 0.0008841 1015980000 1944430 1854980 1441290 2430830 2514380 2168350 3436190 3087430 1867850 3581990 TRUE FALSE FALSE 2376961.745 2071903.775 1974483.148 2563620.088 2264039.499 2281881.453 2702019.935 2330232.952 2242710.362 2689065.815 0.883935876 0.770492029 0.734263601 0.9533497 0.841942762 0.848577763 1.004817331 0.866558542 0.83401096 1 21.35867363 -5.263540013 24.99998021 0.900402815 0.793656655 0.348938125 0.068917755 216.045862 2571203.87 0.019091689 0.029975504 5.45E-06 5.263540013 -0.106746161 HLS(ph)ASTPK ddPTM_HeLa_A486_30min_R1 4 HLSASTPK 8 0 I3L2J0 I3L2J0 CIC 1 0 HLS(0.997)AS(0.003)TPK;HLS(0.993)AS(0.007)TPK;HLS(1)ASTPK;HLS(0.958)AS(0.042)TPK ;;; 123.86 0.00046096 846450000 2656550 2422760 1340620 943950 2396430 2906690 3457610 3260940 2101310 3582920 TRUE FALSE FALSE 2470339.563 2230771.674 1859743.967 2197563.305 2095847.404 2548092.141 2592479.407 2518495.148 2283453.243 2685733.511 0.9198007 0.830600529 0.692452903 0.818235799 0.780363128 0.94875092 0.965277976 0.937730842 0.850215866 1 21.35688473 -6.264723563 24.84610396 0.938058482 0.803647132 0.522514579 0.063044178 225.786292 1708153.109 0.022454494 0.020613369 5.44E-07 6.264723563 -0.134411351 HLS(ph)ESSGKPLSTK ddPTM_HeLa_A485_30min_R1 2 HLSESSGKPLSTK 13 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 HLS(0.974)ES(0.021)S(0.005)GKPLSTK;HLS(0.924)ES(0.049)S(0.027)GKPLSTK ; 93.424 0.00065258 519370000 461730 339300 193612 440020 479280 393780 737220 594750 331690 630710 TRUE FALSE FALSE 564440.2456 378978.1835 265237.1357 464057.1784 431561.2003 414397.7119 579706.9245 448886.63 398257.1406 473485.6044 1.192095896 0.800400646 0.560179936 0.980087196 0.9114558 0.87520657 1.22433907 0.948047049 0.841117738 1 18.85296104 -6.174455401 1.806165761 0.994537407 0.857718085 0.065050098 0.175055343 0.903522825 5.829743161 0.073289489 0.071266198 6.69E-07 6.174455401 -0.136819322 HLS(ph)ESSGKPLSTK ddPTM_HeLa_A486_30min_R1 2 HLSESSGKPLSTK 13 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 HLS(0.978)ES(0.02)S(0.002)GKPLSTK;HLS(0.973)ES(0.023)S(0.003)GKPLSTK ; 116.35 8.84E-05 174780000 665820 528880 250030 183628 592550 766470 935240 931900 547310 1061930 TRUE FALSE FALSE 619149.4563 486969.6227 346848.312 427495.264 518226.8537 671910.7243 701233.06 719726.7132 594751.2715 796015.816 0.777810496 0.611758727 0.435730428 0.537043681 0.651025825 0.844092179 0.880928552 0.904161323 0.747160119 1 19.60243757 -6.210376563 2.96539505 0.874345086 0.581739523 0.662917699 0.097988507 0.170948145 2.99357153 0.036772771 0.035389995 6.16E-07 6.210376563 -0.292605563 HLS(ph)QDHTVPGRPAASELHSR ddPTM_HeLa_A485_30min_R1 3 HLSQDHTVPGRPAASELHSR 20 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 HLS(1)QDHTVPGRPAASELHSR;HLS(1)QDHTVPGRPAASELHSR;HLS(1)QDHTVPGRPAASELHSR ;; 162.77 1.63E-13 985480000 237144 333387 316587 222471 440657 280804 355379 375580 307112 336770 TRUE FALSE FALSE 289895.8647 372373.7096 433705.7056 234624.0274 396783.6418 295506.4632 279449.3735 283468.4161 368746.5614 252819.4368 1.146651809 1.472884025 1.715476116 0.928030022 1.569434878 1.168843927 1.105331841 1.12122873 1.458537231 1 17.94774786 -6.382200972 23.24360038 1.174261862 1.367634494 0.152040643 0.231009551 20.17687797 3812.925649 0.079734416 0.070319034 4.15E-07 6.382200972 0.193372632 HLS(ph)QDHTVPGRPAASELHSR ddPTM_HeLa_A486_30min_R1 2 HLSQDHTVPGRPAASELHSR 20 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 HLS(0.998)QDHT(0.002)VPGRPAASELHSR;HLS(0.996)QDHT(0.004)VPGRPAASELHSR ; 173.35 5.27E-14 529240000 159400 158762 144147 19606.6 212840 163263 187212 212703 169844 141280 TRUE FALSE FALSE 148226.8831 146181.1209 199964.5788 45645.15566 186143.6225 143121.271 140369.5775 164275.1702 184566.2147 105902.5684 1.399653336 1.380335936 1.888193854 0.431010847 1.757687517 1.35144287 1.325459614 1.551191559 1.74279262 1 16.69237805 -7.252374536 23.34152889 1.485244065 1.36192396 0.000857616 0.401189753 1465.595729 3773860.568 0.185388193 0.104827517 5.59E-08 7.252374536 -0.123320105 HLSMFILLPK ddPTM_HeLa_A485_30min_R1 2 HLSMFILLPK 10 0 P36952 P36952 SERPINB5 Serpin B5 0 0 ; ; 87.328 0.014051 42477000 116691 211823 203183 48997 249590 151692 218888 219295 130339 143485 FALSE FALSE TRUE 142648.5104 236593.8572 278348.8469 51673.58204 224739.9432 159634.3586 172120.7906 165512.5574 156496.8418 107716.8301 1.324291758 2.196442811 2.584079447 0.479716883 2.086395811 1.481981584 1.597900629 1.536552433 1.452854132 1 16.71688415 -10.2874503 0.107770296 1.71E-11 2.235442091 0.140931311 0.531200364 106.3178017 2.065558025 38.5806162 9.906178864 5.16E-11 10.2874503 2.235442091 HLSMFILLPK ddPTM_HeLa_A486_30min_R1 1 HLSMFILLPK 10 0 P36952 P36952 SERPINB5 Serpin B5 0 0 81.338 0.019383 19770000 61604 85799 63450 20610 88921 65114 69179 62711 70411 79773 FALSE FALSE TRUE 57285.87772 78999.97477 88019.53925 47981.12157 77767.69902 57080.89671 51869.6825 48433.07427 76514.28217 59797.32156 0.95800073 1.321128985 1.471964579 0.802395832 1.300521445 0.954572801 0.867424847 0.809953908 1.279560358 1 15.86779324 -5.712407815 1.275430093 0.978724147 1.224348397 0.128954326 0.215328633 0.805105201 2.744026989 0.084616939 0.127502703 1.94E-06 5.712407815 0.24562425 HLSPNDNENDTSYVIES(ph)DEDLEMEMLK ddPTM_HeLa_A485_30min_R1 1 HLSPNDNENDTSYVIESDEDLEMEMLK 27 0 Q14191 Q14191 WRN Werner syndrome ATP-dependent helicase 1 0 HLSPNDNENDTSYVIES(1)DEDLEMEMLK 171.5 3.69E-14 38195000 27795 31653 32910 16680 49892 25450 33408 29569 29436 28757 TRUE FALSE FALSE 33977.90186 35354.54301 45084.7785 17591.18616 44924.5773 26782.52265 26270.10788 22317.15639 35343.5352 21588.40913 1.573895587 1.637663192 2.088378918 0.814844024 2.080958213 1.240597326 1.216861683 1.033756413 1.637153297 1 14.39796931 -6.466885769 24.96215165 1.225322475 1.622483308 0.241428196 0.365960975 432.2195606 192687.0386 0.122919664 0.108404514 3.41E-07 6.466885769 0.397160833 HLSVGAPGVVTITHHKS(ph)PAAAR ddPTM_HeLa_A485_30min_R1 2 HLSVGAPGVVTITHHKSPAAAR 22 1 Q9BXB5 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 HLSVGAPGVVT(0.001)IT(0.01)HHKS(0.989)PAAAR;HLSVGAPGVVTIT(0.012)HHKS(0.988)PAAAR ; 165.48 4.77E-14 2504300000 587020 1410100 1193610 204997 1715470 825440 1073630 1152050 903160 464580 TRUE FALSE FALSE 717600.5738 1574998.929 1635176.009 216195.467 1544671.783 868658.762 844240.1797 869507.9312 1084415.928 348768.756 2.057525399 4.515883094 4.688424583 0.61988198 4.428928214 2.490643864 2.420630189 2.493078627 3.109269134 1 18.41191128 -9.393627336 0.20922469 1.84E-09 3.651472959 0.205272567 1.200495117 19.367863 1.233770102 17.76516577 3.489710374 4.04E-10 9.393627336 3.651472957 HLSVGAPGVVTITHHKS(ph)PAAAR ddPTM_HeLa_A486_30min_R1 2 HLSVGAPGVVTITHHKSPAAAR 22 1 Q9BXB5 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 HLSVGAPGVVTIT(0.011)HHKS(0.989)PAAAR;HLSVGAPGVVT(0.001)IT(0.013)HHKS(0.986)PAAAR ; 190.93 4.59E-20 1555220000 1677770 1737310 2081210 171647 2706650 1017820 1262760 1169460 1686900 436270 TRUE FALSE FALSE 1560166.987 1599639.228 2887110.249 399602.8906 2367156.718 892251.7168 946804.0919 903199.4871 1833121.85 327025.1524 4.770785904 4.891486838 8.828404262 1.221933199 7.2384546 2.728388659 2.895202663 2.761865504 5.605446055 1 18.31904208 -6.291648176 24.65897973 3.101860708 5.321945865 0.243294546 2.103591688 927.1233993 756793.4441 0.71041621 0.626613193 5.11E-07 6.291648176 2.220085157 HLT(ph)PEPDIVASTK ddPTM_HeLa_A485_30min_R1 4 HLTPEPDIVASTK 13 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK ;;; 203.27 1.96E-21 1222830000 1619870 1464850 1217430 2539310 2394390 1626870 2885340 2316890 1629590 3426690 TRUE FALSE FALSE 1980204.493 1636151.465 1667808.018 2678026.075 2155996.124 1712050.398 2268863.538 1748669.095 1956633.766 2572479.247 0.769765002 0.63602125 0.648327103 1.041029225 0.838100493 0.665525446 0.881975449 0.679760234 0.760602352 1 21.29472801 -11.43817717 2.100345296 2.92129059 0.769237021 0.252010979 0.119384175 5575995.904 388274.5587 51102642.34 0.031065203 3.65E-12 11.43817717 -2.152053569 HLT(ph)PEPDIVASTK ddPTM_HeLa_A486_30min_R1 4 HLTPEPDIVASTK 13 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK ;;; 194.23 9.58E-18 1077590000 1692250 1692910 907050 814380 1573740 1885350 2407350 2306460 1486270 2591650 TRUE FALSE FALSE 1573632.014 1558757.646 1258284.052 1895917.796 1376346.855 1652754.686 1805005.568 1781329.408 1615101.08 1942683.971 0.810029854 0.802373247 0.647703935 0.975927029 0.708476971 0.850758389 0.929129799 0.916942454 0.831376129 1 20.8896198 -7.280520578 0.271993118 1.015415355 0.739953185 0.338099341 0.08693885 2.043054578 0.576188186 0.190972781 0.208303389 5.24E-08 7.280520578 -0.27546217 HLTGEFEK ddPTM_HeLa_A486_30min_R1 1 HLTGEFEK 8 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 101.72 0.0067543 98080000 172690 169530 98282 25216 190960 155420 181830 153280 133280 151640 FALSE FALSE TRUE 160585.3228 156095.8254 136339.4225 58704.12235 167008.0162 136245.8606 136334.2108 118381.4901 144832.8177 113668.357 1.412753092 1.373256635 1.199449223 0.516450874 1.469256885 1.19862611 1.199403373 1.041463897 1.274170064 1 16.79447117 -4.826037625 4.564488817 1.107781204 1.395854923 0.194936364 0.233238365 0.322442942 13.02841294 0.061978502 0.142199605 1.49E-05 4.826037625 0.288073719 HLTVEELFGTS(ph)LPK ddPTM_HeLa_A485_30min_R1 2 HLTVEELFGTSLPK 14 0 Q9NPI6-2;Q9NPI6;A0A087WT55 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 HLTVEELFGT(0.102)S(0.898)LPK;HLTVEELFGT(0.021)S(0.979)LPK ; 125.89 2.04E-05 179617000 251050 227110 147148 267330 256210 175595 297870 241460 146686 327370 TRUE FALSE FALSE 306895.2064 253668.5389 201584.1685 281933.561 230700.8328 184788.8827 234227.6411 182241.5564 176124.5347 245762.6838 1.248746155 1.032168655 0.820239124 1.147178069 0.938713841 0.751899677 0.953064304 0.741534694 0.71664474 1 17.90690635 -1 0.415770108 0.829795844 7.928077496 0.451581227 0.125952083 70.92730197 0.917833073 0.087788056 417.3388583 0.1 1 7.098281652 HLTVEELFGTS(ph)LPK ddPTM_HeLa_A486_30min_R1 2 HLTVEELFGTSLPK 14 0 Q9NPI6-2;Q9NPI6;A0A087WT55 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 HLTVEELFGT(0.059)S(0.941)LPK;HLTVEELFGT(0.031)S(0.969)LPK ; 154.46 2.36E-08 258040000 717190 623320 316970 145199 517250 665580 857040 702540 475070 823380 TRUE FALSE FALSE 666918.6846 573925.8531 439709.2728 338030.61 452371.6818 583467.5067 642599.5272 542586.9783 516249.4501 617200.2887 1.080554719 0.929885912 0.712425579 0.547683817 0.732941462 0.945345486 1.041152344 0.879110053 0.836437473 1 19.23537921 -6.274235099 23.37157161 0.939149931 0.788914989 0.193544749 0.141563742 599.5502274 1095082.354 0.055624482 0.049429869 5.32E-07 6.274235099 -0.150234941 HLVFPLLEFLSVK ddPTM_HeLa_A485_30min_R1 1 HLVFPLLEFLSVK 13 0 P60228;E5RIP5;E5RJ25;H0YBP5;E5RII3;H0YBR5;E5RHS5 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 0 218.62 1.61E-21 156610000 147740 144660 126580 179270 186970 151140 261180 243360 98678 248940 FALSE FALSE TRUE 180604.2533 161576.7286 173407.2094 189063.0662 168354.6103 159053.4567 205376.7594 183675.5784 118481.7695 186883.8394 0.966398453 0.864583739 0.927887665 1.011660863 0.900851624 0.851081919 1.098954088 0.98283286 0.633986169 1 17.51178229 HLVFPLLEFLSVK ddPTM_HeLa_A486_30min_R1 2 HLVFPLLEFLSVK 13 0 P60228;E5RIP5;E5RJ25;H0YBP5;E5RII3;H0YBR5;E5RHS5 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 0 ; ; 141.73 3.68E-05 78860000 26948.1 29669.8 22360.2 14226.7 32695 30763 44799 37071 29598 41184 FALSE FALSE TRUE 25059.17735 27318.65699 31018.66827 33120.47658 28594.08823 26967.77384 33589.81636 28630.74255 32163.57847 30871.25834 0.811731646 0.884922043 1.004774989 1.072858003 0.926236563 0.873556029 1.088061134 0.927423892 1.041861596 1 14.91397667 -4.583527422 3.409344725 0.988861962 0.821751928 0.458992329 0.064390746 0.208723875 4.729041128 0.016913075 0.060236839 2.61E-05 4.583527422 -0.167110034 HLVMGDIPAAVNAFQEAASLLGK ddPTM_HeLa_A486_30min_R1 2 HLVMGDIPAAVNAFQEAASLLGK 23 0 P49321;P49321-3;P49321-2;E9PPQ8;E9PI86 P49321 NASP Nuclear autoantigenic sperm protein 0 0 ; ; 105.32 9.09E-07 3493650 3164.3 2356.5 1895.41 1275.5 2508.9 2605.78 3029 2898.3 2737.19 3039.6 FALSE FALSE TRUE 2942.49891 2169.762358 2629.363513 2969.42846 2194.210367 2284.305357 2271.112163 2238.420359 2974.451833 2278.464376 1.291439507 0.952291544 1.154006857 1.303258674 0.963021582 1.002563561 0.996773172 0.982424998 1.305463392 1 11.1538461 -5.78513778 24.99970466 1.036625111 1.157806443 0.1997371 0.128834763 422.1380886 445315.748 0.039956024 0.045330156 1.64E-06 5.78513778 0.121181332 HLYPNTPYAYTFWTYMMNAR ddPTM_HeLa_A485_30min_R1 4 HLYPNTPYAYTFWTYMMNAR 20 0 P27695 P27695 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 0 ;;; ;;; 295.65 1.83E-72 154531000 38180.2 70987.8 75636.4 47063.5 95887 60591.4 110079 105527 42329 80118.4 FALSE FALSE TRUE 46673.25377 79289.2057 103617.4519 49634.45983 86340.1536 63763.87201 86559.72239 79646.33779 50824.04204 60146.35735 0.775994687 1.318271117 1.722755233 0.825228027 1.435500958 1.0601452 1.439151533 1.324208835 0.845006153 1 15.87618975 -7.761073679 24.99999909 0.922502985 1.250160641 0.172363581 0.275146327 15.77780413 1079272.534 0.207200399 0.067146189 1.73E-08 7.761073679 0.327657656 HLYPNTPYAYTFWTYMMNAR ddPTM_HeLa_A486_30min_R1 4 HLYPNTPYAYTFWTYMMNAR 20 0 P27695 P27695 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 0 ;;; ;;; 284.84 2.96E-60 140616000 30480.4 58498.5 59385.3 18653.1 86815 47778.4 82983 73104 60642.6 57281.7 FALSE FALSE TRUE 28343.88136 53862.86581 82380.87855 43425.35948 75925.85318 41883.98678 62219.7757 56459.81505 65899.1494 42937.98948 0.660111983 1.254433812 1.91860121 1.011350555 1.768267544 0.97545291 1.449061226 1.314915201 1.534751631 1 15.38996702 -4.292971094 4.358659411 1.383947346 0.625907406 0.325627763 0.30377761 0.194804468 8.283712705 0.07020154 0.420951821 5.09E-05 4.292971094 -0.758039941 HLYTLDGGDIINALCFSPNR ddPTM_HeLa_A485_30min_R1 1 HLYTLDGGDIINALCFSPNR 20 0 D6RF23;H0Y8R5;H0YAF8;D6RAC2;J3KPE3;P63244;H0YAM7;H0Y8W2;D6REE5;D6R9Z1;D6R9L0 D6RF23 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 186.45 6.18E-19 32061000 14729 11126 15847 17942 18349 15099 22995 20387 13162 25037 FALSE FALSE TRUE 18005.41524 12427.08892 21709.46475 18922.12603 16522.10913 15889.56029 18081.9304 15387.05628 15803.49267 18795.73667 0.95795209 0.661165302 1.15502069 1.006724363 0.879034933 0.845381087 0.962022969 0.818646087 0.840801983 1 14.19811784 HLYTLDGGDIINALCFSPNR ddPTM_HeLa_A486_30min_R1 3 HLYTLDGGDIINALCFSPNR 20 0 D6RF23;H0Y8R5;H0YAF8;D6RAC2;J3KPE3;P63244;H0YAM7;H0Y8W2;D6REE5;D6R9Z1;D6R9L0 D6RF23 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 ;; ;; 229.6 5.98E-31 205121000 56687.7 77228.7 73527.7 28926.3 96606.4 82122.3 86246.4 90396.5 81537.2 85797.9 FALSE FALSE TRUE 52714.18497 71108.81655 101999.5946 67341.88825 84489.12449 71990.88558 64666.6385 69815.19029 88604.91015 64313.54739 0.81964356 1.105658441 1.585973698 1.047087138 1.313706488 1.119373577 1.005490151 1.085544075 1.377702113 1 15.97283505 -6.472665975 24.96597434 1.115472226 1.189400372 0.015801103 0.207797589 1765.268977 877698.6179 0.074632904 0.065819117 3.37E-07 6.472665975 0.073928146 HMDPPPAPVQDRS(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 9 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR ;;;;;;;; 144.5 8.55E-08 8779510000 3751310 5093150 4985510 4598360 5583330 4376120 4951170 4558440 4687200 5781320 TRUE FALSE FALSE 4585775.968 5688749.588 6829857.613 4849556.763 5027434.061 4605246.876 3893312.082 3440475.443 5627878.046 4340143.321 1.056595515 1.31072851 1.573647944 1.117372493 1.158356692 1.061081751 0.897046893 0.792710099 1.296703272 1 22.04931125 -5.926271885 1.643678568 0.987199119 1.303582648 0.333438816 0.173802539 0.402226307 2.229953807 0.067286522 0.079011323 1.19E-06 5.926271885 0.316383529 HMDPPPAPVQDRS(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 10 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR ;;;;;;;;; 147.41 6.94E-08 9786810000 4192470 5283230 4471190 1610992 5168630 4698310 5072140 4982290 4637530 4714070 TRUE FALSE FALSE 3898599.503 4864567.614 6202554.511 3750470.791 4520332.23 4118680.281 3803036.924 3847931.33 5039514.834 3533636.189 1.103282651 1.376646421 1.755289503 1.061363024 1.279229663 1.165564326 1.076238957 1.088943831 1.426155542 1 21.75272208 HMDPPPAPVQDRS(ph)PSPR ddPTM_HeLa_A485_30min_R1 5 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 HMDPPPAPVQDRS(0.832)PS(0.168)PR;HMDPPPAPVQDRS(0.966)PS(0.034)PR;HMDPPPAPVQDRS(0.882)PS(0.118)PR;HMDPPPAPVQDRS(0.984)PS(0.016)PR;HMDPPPAPVQDRS(0.958)PS(0.042)PR ;;;; 105.06 0.00010516 3108460000 764260 1045950 1105280 882050 1445830 971060 1228260 1226540 995250 1196980 TRUE FALSE FALSE 934267.0003 1168264.754 1514169.067 930234.158 1301878.089 1021903.2 965832.217 925729.1419 1194987.546 898594.9148 1.039697627 1.300101675 1.685040769 1.035209684 1.448793074 1.13722344 1.074824931 1.030196284 1.329840094 1 19.77731137 -6.416584722 7.74471977 1.110528236 1.307845182 0.189741924 0.194039282 0.482461572 31.36786189 0.067698934 0.059558662 3.83E-07 6.416584722 0.197316945 HMDPPPAPVQDRS(ph)PSPR ddPTM_HeLa_A486_30min_R1 6 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 HMDPPPAPVQDRS(0.988)PS(0.012)PR;HMDPPPAPVQDRS(0.979)PS(0.021)PR;HMDPPPAPVQDRS(0.97)PS(0.03)PR;HMDPPPAPVQDRS(0.742)PS(0.258)PR;HMDPPPAPVQDRS(0.977)PS(0.023)PR;HMDPPPAPVQDRS(0.85)PS(0.15)PR ;;;;; 102.45 0.00018957 2663400000 1821121 2240410 2158910 801835 2899200 2067960 2427000 2491440 2014940 2074000 TRUE FALSE FALSE 1693469.822 2062871.752 2994897.77 1866712.402 2535555.302 1812836.121 1819738.93 1924193.5 2189596.622 1554656.901 1.089288461 1.326898399 1.92640432 1.200723067 1.630942043 1.166068295 1.17050838 1.237696561 1.408411477 1 20.56816479 -6.287153033 24.34618598 1.209766162 1.443155287 0.20260828 0.235371388 963.1725996 911946.6906 0.082837502 0.073085368 5.16E-07 6.287153033 0.233389125 HMGIGK(ac)R ddPTM_HeLa_A485_30min_R1 2 HMGIGKR 7 1 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 1 ; HMGIGK(1)R;HMGIGK(1)R 93.262 0.0091835 83490000 10953.3 15615.5 13280.5 11455 19678.5 15252 18452.3 17901.9 15364.6 18174.7 FALSE TRUE FALSE 13389.8238 17441.59689 18193.5096 12080.75764 17719.23944 16050.57114 14509.81536 13511.43096 18448.13429 13644.08177 0.981364963 1.27832691 1.333435984 0.885421082 1.298675847 1.176376059 1.063451217 0.990277776 1.352097898 1 13.73598769 -11.07904457 2.781271462 0.750950824 1.150124944 0.077245601 0.156588558 38421394.47 35482694.09 59976019.77 0.037738992 8.34E-12 11.07904457 0.39917412 TEFSPAAFEQEQLGS(ph)PQVR ddPTM_HeLa_A485_30min_R1 2 TEFSPAAFEQEQLGSPQVR 19 0 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 TEFSPAAFEQEQLGS(1)PQVR;TEFSPAAFEQEQLGS(1)PQVR ; 156.73 4.93E-09 129957000 63539 65498 62390 52093 72063 56878 49643 59193 31402 49570 TRUE FALSE FALSE 77673.03134 73157.42134 85470.65726 54938.70868 64888.15469 59856.04413 39036.3675 44675.82394 37704.09336 37213.11127 2.087249055 1.965904458 2.296788802 1.476326671 1.743690664 1.608466535 1.048994996 1.200539875 1.013193793 1 15.18352339 -6.206690051 0.630824937 0.971643549 2.148405223 0.837528667 0.181568856 0.305822408 0.267321817 0.140856948 0.161814896 6.21E-07 6.206690051 1.176761674 up VEHES(ph)FEK ddPTM_HeLa_A486_30min_R1 3 VEHESFEK 8 0 K7EMC6;A0A0A0MSA9;A0A0C4DG49;P15151-3;P15151-2;P15151-4;P15151 K7EMC6 PVR Poliovirus receptor 1 0 VEHES(1)FEK;VEHES(1)FEK;VEHES(1)FEK ;; 83.614 0.0064147 1177890000 1056621 686521 397399 314469 731871 441344 532831 339411 198412 254657 TRUE FALSE FALSE 982557.3243 632118.5757 551282.5355 732099.7244 640072.9148 386895.4645 399511.0481 262134.5246 215610.5119 190889.2297 5.147264338 3.311441807 2.887970874 3.835207076 3.353111728 2.026806149 2.092894653 1.373228469 1.129505904 1 17.54237618 -6.302352635 0.472853357 0.77485559 4.393550944 0.82374475 0.530730822 0.483908473 0.229548742 0.524012113 0.710399691 4.98E-07 6.302352635 3.618695354 up HMS(ph)VSSIK ddPTM_HeLa_A485_30min_R1 1 HMSVSSIK 8 0 P15927;P15927-2;P15927-3;Q5TEJ0 P15927 RPA2 Replication protein A 32 kDa subunit 1 0 HMS(0.901)VS(0.098)S(0.001)IK 65.535 0.01657 37454000 55064 60202 41504 57782 79398 64332 77788 93371 54614 79894 TRUE FALSE FALSE 67312.79683 67242.10021 56858.05673 60938.48435 71492.85634 67700.32404 61167.95833 70471.61585 65574.52885 59977.89614 1.122293397 1.121114686 0.947983514 1.016015704 1.191986731 1.128754565 1.019841679 1.174959783 1.093311588 1 15.8721433 -4.588197119 24.99999998 1.077307377 1.122041972 0.063550053 0.074397872 175.5158835 67174.94139 0.019887039 0.052616167 2.58E-05 4.588197119 0.044734595 HMYHSLYLK ddPTM_HeLa_A485_30min_R1 3 HMYHSLYLK 9 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 0 ;; ;; 126.41 0.00055647 644548000 432181 593785 419792 430335 599065 497113 673625 772099 437211 608714 FALSE FALSE TRUE 528318.1724 663222.9905 575090.5298 453843.1114 539419.9852 523141.068 529699.5157 582740.5096 524955.2374 456972.8024 1.156126075 1.451340183 1.258478682 0.993151253 1.180420328 1.144796945 1.159148888 1.27521924 1.148766917 1 18.80174878 -8.541572685 0.024348472 2.97E-12 2.235048823 0.233493958 0.11049298 648.0247696 6.507093921 316.3362497 279.2976119 2.87E-09 8.541572685 2.235048823 HMYHSLYLK ddPTM_HeLa_A486_30min_R1 4 HMYHSLYLK 9 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 0 ;;; ;;; 126.41 0.0006032 143689000 195678 154484 117540 49040.6 185982 150708 188834 175442 135239 194456 FALSE FALSE TRUE 181961.9827 142242.1252 163054.6358 114168.9952 162654.4033 132115.1792 141585.7359 135497.6865 146961.6254 145762.9519 1.248341779 0.975845531 1.118628799 0.783251119 1.115883023 0.906370086 0.971342403 0.929575621 1.008223444 1 17.15326456 -1.418642228 1.106313746 0.967158553 199.9999999 0.426975359 0.093027032 1016.995405 2.295075468 0.025956818 512336.5393 0.038137988 1.418642228 199.0328413 HNDIVDS(ph)DS(ph)DAEDR ddPTM_HeLa_A485_30min_R1 1 HNDIVDSDSDAEDR 14 0 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 2 0 HNDIVDS(1)DS(1)DAEDR 202.62 1.65E-22 0 166550 357460 299180 421490 364520 115960 327040 239500 310610 533360 TRUE FALSE FALSE 203598.4729 399261.8375 409859.1319 444514.9314 328227.1089 122031.4863 257165.2323 180762.2495 372946.5779 400403.1678 0.508483672 0.997149547 1.023616107 1.110168368 0.819741539 0.304771531 0.642265729 0.451450598 0.931427641 1 18.61109386 -4.223028555 22.13357028 0.787305816 0.50848049 0.107759802 0.252557693 12447.40292 7171969.495 0.069469421 13.94042965 5.98E-05 4.223028555 -0.278825326 HNDIVDS(ph)DS(ph)DAEDR ddPTM_HeLa_A486_30min_R1 2 HNDIVDSDSDAEDR 14 0 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 2 0 HNDIVDS(1)DS(1)DAEDR;HNDIVDS(1)DS(1)DAEDR ; 219.87 9.63E-24 307410000 348410 712750 477330 219925 588750 384360 647750 620850 618060 776910 TRUE FALSE FALSE 323988.2582 656269.0942 662164.9593 511996.5144 514903.4851 336941.5711 485676.0988 479496.0081 671633.9384 582366.6792 0.55633035 1.126900143 1.137024117 0.879165194 0.884156844 0.578572887 0.833969587 0.82335756 1.153283597 1 19.15156829 -10.05581556 12.36002013 1 0.88768903 0.028242085 0.200596917 0 0 0.19814814 0.048057983 8.79E-11 10.05581556 -0.112310971 HNDIVDS(ph)DS(ph)DAEDRGTLSAELTAAHFGGGGGLLHK ddPTM_HeLa_A485_30min_R1 1 HNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHK 35 1 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 2 0 HNDIVDS(1)DS(1)DAEDRGTLSAELTAAHFGGGGGLLHK 144.57 1.05E-09 181470000 41784 85437 77993 136840 133410 49027 121340 113860 99052 201000 TRUE FALSE FALSE 51078.70665 95428.11395 106845.8563 144315.2227 120127.232 51593.97791 95414.71774 85935.65647 118930.8278 150894.3991 0.338506313 0.632416541 0.708083646 0.956398803 0.796101331 0.341921093 0.632327762 0.56950859 0.78817258 1 17.20317973 -8.03059091 4.070862591 0.999622991 0.633913426 0.308196478 0.17688912 0.278767645 13.6999356 0.181558419 0.047676702 9.32E-09 8.03059091 -0.365709565 HNDIVDS(ph)DS(ph)DAEDRGTLSAELTAAHFGGGGGLLHK ddPTM_HeLa_A486_30min_R1 1 HNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHK 35 1 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 2 0 HNDIVDS(1)DS(0.999)DAEDRGT(0.001)LSAELTAAHFGGGGGLLHK 153.58 4.33E-10 197070000 45329 65297 44093 25638 73132 35855 83715 74582 60696 86269 TRUE FALSE FALSE 42151.67118 60122.62791 61166.99045 59686.55967 63959.10263 31431.57465 62768.62155 57601.30671 65957.17815 64666.68088 0.651829823 0.929731155 0.945881088 0.922987833 0.989058071 0.486055171 0.970648574 0.890741661 1.019956139 1 15.98073494 HNDIVDS(ph)DS(ph)DAEDRGTLSAELTAAHFGGGGGLLHKK ddPTM_HeLa_A485_30min_R1 2 HNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHKK 36 2 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 2 0 HNDIVDS(1)DS(0.999)DAEDRGT(0.001)LSAELTAAHFGGGGGLLHKK;HNDIVDS(1)DS(0.973)DAEDRGT(0.026)LS(0.001)AELTAAHFGGGGGLLHKK ; 139.79 1.17E-07 728450000 224046 348916 220277 525360 403930 249026 706040 711640 324720 745860 TRUE FALSE FALSE 273884.2598 389718.691 301766.6288 554059.0865 363713.3109 262064.6163 555188.7862 537109.1742 389888.3255 559930.8285 0.489139454 0.696012206 0.53893555 0.989513451 0.64956829 0.46803034 0.991531021 0.959242011 0.696315162 1 19.09488909 -3.602207074 0.133825981 1.083638352 3.02E-14 0.325493328 0.170290246 50.41804166 0.914417846 1.135824882 9.794786219 0.000249915 3.602207074 -1.083638352 HNGICIYFSR ddPTM_HeLa_A485_30min_R1 1 HNGICIYFSR 10 0 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 0 73.499 0.03044 32173000 15959 15873 19659 19324 24444 12955 18856 18199 15724 26466 FALSE FALSE TRUE 19509.02449 17729.20927 26931.68218 20379.62119 22010.26953 13633.30377 14827.26156 13735.66672 18879.66257 19868.51327 0.981906609 0.892326921 1.355495593 1.025724518 1.107796504 0.686176343 0.746269304 0.691328361 0.950230262 1 14.2781963 -6.252190855 24.64469303 0.791225653 1.075738763 0.430501539 0.147017857 492.7367929 1313004.253 0.048793684 0.048146493 5.60E-07 6.252190855 0.28451311 HNGICIYFSR ddPTM_HeLa_A486_30min_R1 1 HNGICIYFSR 10 0 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 0 77.744 0.024452 23221000 19083 16180 12956 6643.4 19746 14525 17290 17685 13952 18512 FALSE FALSE TRUE 17745.38024 14897.83787 17972.91017 15466.17094 17269.27256 12733.05318 12963.85913 13658.51156 15161.37059 13876.47471 1.278810405 1.073603937 1.295207216 1.114560525 1.244499984 0.917599999 0.934232894 0.984292614 1.092595267 1 13.76035348 -6.259140453 24.99639131 0.981542987 1.194634331 0.659791081 0.077301401 126.0375833 1370418.511 0.02515951 0.024018459 5.51E-07 6.259140453 0.213091344 HNGPNDASDGTVR ddPTM_HeLa_A485_30min_R1 1 HNGPNDASDGTVR 13 0 P31942-2;P31942 P31942-2 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 0 100.11 0.0017058 6962400 3689.3 4505.5 5550.8 4011.2 6119.3 5969.8 6591.6 7561 4821.9 5039.4 FALSE FALSE TRUE 4509.972057 5032.379032 7604.271908 4230.321699 5510.041006 6282.369497 5183.250812 5706.652895 5789.611101 3783.170323 1.192114463 1.330201551 2.010026316 1.118194884 1.456461257 1.660609743 1.370081273 1.508431397 1.530359621 1 11.88538001 -9.487840114 7.479967334 1.000000001 1.470101364 0.255498627 0.237442532 0 0 0.224076627 0.054346565 3.25E-10 9.487840114 0.470101363 HNGS(ph)LSPGLEARDPLEAR ddPTM_HeLa_A486_30min_R1 1 HNGSLSPGLEARDPLEAR 18 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HNGS(0.5)LS(0.5)PGLEARDPLEAR 91.128 0.00034922 243300000 220040 198270 196070 78076 469040 213020 305350 368610 177240 204330 TRUE FALSE FALSE 204616.3323 182558.3631 271993.5549 181764.8737 410208.6296 186739.7582 228948.2003 284685.5497 192603.3059 153164.438 1.335925851 1.1919109 1.775827068 1.186730262 2.678223711 1.219210938 1.494786931 1.858692222 1.257493635 1 17.22472184 -7.982663094 6.699323596 1.000278963 1.591462349 0.171419121 0.42701072 0.223694553 41.57914862 0.40184934 0.104124764 1.04E-08 7.982663094 0.591183386 HNGSLS(ph)PGLEAR ddPTM_HeLa_A485_30min_R1 4 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR ;;; 195.45 5.44E-14 5468400000 1091870 1490550 1360850 1118170 1679700 1145280 1606680 1423800 1231250 1635360 TRUE FALSE FALSE 1334752.715 1664856.856 1864285.045 1179252.796 1512463.17 1205245.09 1263399.693 1074610.818 1478350.581 1227694.849 1.087202342 1.356083605 1.518524776 0.960542269 1.231953667 0.981713894 1.029082833 0.875307752 1.204167781 1 20.22752058 -5.276321522 24.99445758 1.040265108 1.324151589 0.455199258 0.14046188 679.1173682 1140571.644 0.039197856 0.058398712 5.29E-06 5.276321522 0.283886481 HNGSLS(ph)PGLEAR ddPTM_HeLa_A486_30min_R1 4 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR;HNGSLS(1)PGLEAR ;;; 169.21 1.20E-10 5487150000 1534670 1628960 1275326 353229 1785470 1365770 1614260 1647930 1396320 1595950 TRUE FALSE FALSE 1427097.558 1499875.277 1769166.382 822334.9632 1561519.704 1197275.184 1210355.074 1272732.313 1517354.142 1196313.732 1.192912461 1.253747438 1.478848177 0.687390725 1.305276084 1.000803678 1.011737174 1.063878378 1.268358041 1 20.19016435 -5.223694252 24.9991179 1.05808416 1.303027101 0.322680973 0.172347327 692.6949257 458780.6893 0.044654397 0.077341172 5.97E-06 5.223694252 0.24494294 HNGSLS(ph)PGLEARDPLEAR ddPTM_HeLa_A485_30min_R1 4 HNGSLSPGLEARDPLEAR 18 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HNGSLS(1)PGLEARDPLEAR;HNGS(0.001)LS(0.999)PGLEARDPLEAR;HNGS(0.043)LS(0.957)PGLEARDPLEAR;HNGSLS(1)PGLEARDPLEAR ;;; 210.31 7.18E-26 975540000 88868 179741 180120 89314 326687 202678 346245 460627 176823 176420 TRUE FALSE FALSE 108636.38 200760.1464 246753.8834 94192.99766 294160.8952 213289.9067 272266.9272 347657.506 212309.7542 132441.7408 0.820257869 1.515837418 1.863112656 0.711203259 2.22105881 1.610443244 2.05574863 2.62498442 1.603042613 1 17.01499835 -5.778687787 24.99973362 1.931850463 1.293584338 0.253621299 0.509524816 323.4522785 468807.7684 0.15362169 0.174597427 1.66E-06 5.778687787 -0.638266125 HNGSLS(ph)PGLEARDPLEAR ddPTM_HeLa_A486_30min_R1 1 HNGSLSPGLEARDPLEAR 18 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HNGSLS(1)PGLEARDPLEAR 200.04 2.15E-25 296780000 84835 85410 94655 28024 148330 73110 118000 121790 69369 86368 TRUE FALSE FALSE 78888.50459 78641.80054 131307.9509 65241.28825 129725.0683 64090.43153 88475.15192 94061.07566 75381.96077 64740.89064 1.218526712 1.214716075 2.028207361 1.007729236 2.003757857 0.989952886 1.366603874 1.452885104 1.164363975 1 15.98238959 HNGTGGK(ac)SIYGEKFEDENFILK ddPTM_HeLa_A486_30min_R1 1 HNGTGGKSIYGEKFEDENFILK 22 2 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 HNGTGGK(1)SIYGEKFEDENFILK 120.33 1.51E-08 24213000 40329 53747 37525 19240 70149 70679 86739 78382 46095 58787 FALSE TRUE FALSE 37502.14536 49487.89198 52055.68495 44791.69234 61350.25831 61959.34359 65035.98477 60536.12967 50090.55171 44066.35256 0.851038109 1.123031272 1.18130233 1.016460173 1.39222456 1.406046564 1.47586494 1.373749497 1.136707461 1 15.42738987 -4.049752903 0.699673795 1.311551544 0.493194666 0.378300402 0.155960914 3.869639947 1.178677243 0.067215203 2.680733351 8.92E-05 4.049752903 -0.818356878 HNIMDFAMPYFIQVMK ddPTM_HeLa_A485_30min_R1 4 HNIMDFAMPYFIQVMK 16 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KRF5;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ;;; ;;; 155.92 8.36E-10 92248900 83099.9 69949 70671.4 108904.9 109466.7 70213.5 120072.1 93871.8 67481.1 161775 FALSE FALSE TRUE 101585.1861 78128.92707 96815.69174 114854.0989 98567.81099 73889.77029 94417.71494 70849.59386 81023.9378 121447.4697 0.836453705 0.643314572 0.797181629 0.945710101 0.811608601 0.608409302 0.777436657 0.583376451 0.667152127 1 16.88997291 -6.212179011 24.89307135 0.704370972 0.804945168 0.07402403 0.128454412 779.28716 393802.1036 0.041536528 0.041536439 6.14E-07 6.212179011 0.100574196 HNIMDFAMPYFIQVMK ddPTM_HeLa_A486_30min_R1 5 HNIMDFAMPYFIQVMK 16 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KRF5;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ;;;; ;;;; 154.82 1.93E-09 112887300 116757 135921.1 93062.3 58937.3 142722 148441.7 180515.3 161412.7 135559.8 171656.2 FALSE FALSE TRUE 108572.9372 125150.217 129098.5149 137209.0129 124820.4759 130128.4723 135348.4626 124662.5518 147310.2326 128672.3702 0.843793715 0.972626966 1.003311858 1.066344023 0.970064325 1.011316354 1.051884429 0.96883699 1.144847432 1 16.97334277 -4.139239683 1.51392913 1.027140189 0.730631078 0.565817352 0.048921037 1.07223039 1.833770254 0.013013896 0.516620106 7.26E-05 4.139239683 -0.296509111 HNKPEVEVR ddPTM_HeLa_A485_30min_R1 1 HNKPEVEVR 9 1 F8WE39;F8WDD7;H7C0A3;F8WCF6;A0A0A6YYG9;P59998;P59998-3;P59998-2 F8WE39 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 0 0 88.496 0.014655 7158100 4723.3 4964.1 4571.7 6827.9 7582.9 4854.7 8622 8274.2 4931.2 8715.4 FALSE FALSE TRUE 5773.98179 5544.608313 6262.962074 7200.890888 6827.919851 5108.884585 6779.839265 6244.939477 5920.846608 6542.811175 0.8824925 0.847435172 0.957228003 1.100580575 1.043575868 0.780839374 1.036227255 0.954473438 0.904939246 1 12.67569492 -4.819617956 6.008767234 0.973891448 0.865124716 0.212598168 0.082840755 0.285363295 20.64728532 0.022548749 0.048982835 1.51E-05 4.819617956 -0.108766732 HNKPEVEVR ddPTM_HeLa_A486_30min_R1 2 HNKPEVEVR 9 1 F8WE39;F8WDD7;H7C0A3;F8WCF6;A0A0A6YYG9;P59998;P59998-3;P59998-2 F8WE39 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 0 0 ; ; 121.9 0.0012694 230390000 360430 344760 205700 138331 393750 362500 421640 414900 275650 425740 FALSE FALSE TRUE 335165.7183 317439.962 285352.5488 322041.5589 344362.2034 317778.4356 316141.2123 320436.3272 299543.5639 319131.9329 1.050241871 0.994698209 0.894152291 1.009117314 1.07905906 0.995758816 0.990628576 1.00408732 0.93861984 1 18.28379345 -4.269531404 6.397476084 0.99025059 1.051333751 0.139530129 0.045243641 0.246691051 57.92617445 0.011921611 0.064829166 5.38E-05 4.269531404 0.061083161 HNKS(ph)PTLSCR ddPTM_HeLa_A485_30min_R1 3 HNKSPTLSCR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 HNKS(0.992)PT(0.008)LSCR;HNKS(0.493)PT(0.493)LS(0.015)CR;HNKS(0.515)PT(0.431)LS(0.054)CR ;; 105.95 0.00045759 2294270000 1650880 1831450 1462280 2256630 2370330 1907630 2861660 2982530 1854780 3079600 TRUE FALSE FALSE 2018112.561 2045622.146 2003238.223 2379903.983 2134331.622 2007510.557 2250242.963 2251059.841 2227017.333 2311912.396 0.872919131 0.884818192 0.86648535 1.02940924 0.923188797 0.868333316 0.973325359 0.973678694 0.963279291 1 21.1406553 -1 0.167229792 1.003679283 0.457391706 0.390288366 0.044549112 68.97168595 0.736770167 0.126623257 9.389114864 0.1 1 -0.546287577 HNKS(ph)PTLSCR ddPTM_HeLa_A486_30min_R1 4 HNKSPTLSCR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 HNKS(0.987)PT(0.013)LSCR;HNKS(0.941)PT(0.058)LS(0.001)CR;HNKS(0.913)PT(0.085)LS(0.002)CR;HNKS(0.975)PT(0.025)LSCR ;;; 143.21 2.93E-06 2268050000 3206960 2939000 1593010 1048080 3029560 3023620 3755440 3591390 2540420 4046800 TRUE FALSE FALSE 2982168.665 2706102.936 2209866.134 2439983.207 2649564.335 2650596.506 2815789.191 2773708.896 2760625.651 3033454.94 0.983093115 0.892086083 0.728498092 0.804357822 0.873447731 0.873787994 0.928244938 0.914372869 0.910059884 1 21.53253045 -6.676539688 1.549269827 0.937287425 0.847463817 0.263692286 0.064884823 0.607301618 2.977319832 0.038217925 0.02474816 2.11E-07 6.676539688 -0.089823608 HNPT(ph)GAVLFMGQINKP ddPTM_HeLa_A485_30min_R1 1 HNPTGAVLFMGQINKP 16 1 P07093-2;P07093;P07093-3 P07093-2 SERPINE2 Glia-derived nexin 1 0 HNPT(1)GAVLFMGQINKP 86.467 0.0033496 98966000 176860 92740 118740 360620 271650 125110 249830 187390 160580 465570 TRUE FALSE FALSE 216201.8968 103585.1363 162666.8672 380319.7575 244603.5722 131660.5661 196451.7796 141432.3087 192806.9331 349511.9672 0.618582244 0.296370786 0.465411438 1.088145166 0.699843196 0.376698307 0.562074544 0.404656555 0.551646156 1 18.41498233 -10.24067361 3.689799827 1.000689642 0.561278975 0.282104309 0.209316185 473707339.8 792501387.1 3746456.3 0.056084216 5.75E-11 10.24067361 -0.439410667 HNPT(ph)GAVLFMGQINKP ddPTM_HeLa_A486_30min_R1 2 HNPTGAVLFMGQINKP 16 1 P07093-2;P07093;P07093-3 P07093-2 SERPINE2 Glia-derived nexin 1 0 HNPT(1)GAVLFMGQINKP;HNPT(1)GAVLFMGQINKP ; 86.467 0.0033496 343340000 300470 636930 348520 349200 737590 797380 963480 982100 439270 648560 TRUE FALSE FALSE 279408.6046 586457.3471 483476.2777 812955.2476 645074.5844 699007.3628 722407.1133 758497.2691 477346.2773 486156.3546 0.574729924 1.206314268 0.994487212 1.672209444 1.326887077 1.437824182 1.485956332 1.560192029 0.981878099 1 18.89106085 -4.072436661 1.209504217 1.368890034 8.15E-17 0.463421701 0.234196869 1.832265318 1.708566976 0.067070034 3.494260533 8.46E-05 4.072436661 -1.368890034 HNQGDS(ph)DDDVEETHPMDGNDSDYDPKK ddPTM_HeLa_A485_30min_R1 1 HNQGDSDDDVEETHPMDGNDSDYDPKK 27 1 B4DV59;Q9P2K3-2;Q9P2K3-4;Q9P2K3;Q9P2K3-3 B4DV59 RCOR3 REST corepressor 3 1 0 HNQGDS(1)DDDVEETHPMDGNDSDYDPKK 237.52 9.05E-50 876640000 249800 229530 161400 623230 396220 241490 710300 550120 266780 860630 TRUE FALSE FALSE 305367.1482 256371.5369 221108.5764 657275.4768 356770.9456 254134.043 558538.6024 415202.2074 320320.2989 646090.7797 0.472638146 0.396804203 0.342225247 1.01731134 0.552199407 0.393341077 0.864489356 0.642637568 0.495782186 1 19.30137736 -14 0.072699474 2.277473613 0.134003063 0.300520596 0.201867796 398.7810728 2.074128414 86.39894727 9.934333478 1.00E-14 14 -2.143470551 HNQGDS(ph)DDDVEETHPMDGNDSDYDPKK ddPTM_HeLa_A486_30min_R1 2 HNQGDSDDDVEETHPMDGNDSDYDPKK 27 1 B4DV59;Q9P2K3-2;Q9P2K3-4;Q9P2K3;Q9P2K3-3 B4DV59 RCOR3 REST corepressor 3 1 0 HNQGDS(1)DDDVEETHPMDGNDSDYDPKK;HNQGDS(1)DDDVEETHPMDGNDSDYDPKK ; 132.13 4.30E-06 1414970000 256190 307340 98913 197103 267430 306030 571880 502140 221369 617920 TRUE FALSE FALSE 238232.404 282985.2591 137214.7626 458865.745 233886.4357 268275.1301 428789.5753 387813.6836 240557.4432 463188.81 0.514331087 0.61095012 0.296239373 0.990666733 0.504948372 0.579191734 0.925733882 0.837269112 0.519350723 1 18.82124087 -6.499922557 0.085247412 1.367529872 1.77E-13 0.285584734 0.194602725 35.38567059 1.497295325 9.5077296 13.57509783 3.16E-07 6.499922557 -1.367529872 HNS(ph)GSSSVDDGSATR ddPTM_HeLa_A485_30min_R1 1 HNSGSSSVDDGSATR 15 0 Q9NV58-3;Q9NV58 Q9NV58-3 RNF19A E3 ubiquitin-protein ligase RNF19A 1 0 HNS(0.799)GS(0.201)S(0.001)SVDDGSATR 106.39 0.00021673 163390000 119300 89502 86980 172970 104660 228030 115700 133340 77377 221160 TRUE FALSE FALSE 145837.8734 99968.48034 119157.5215 182418.9131 94239.68292 239969.2982 90979.74982 100638.1559 92905.85416 166028.8821 0.878388576 0.602115 0.717691524 1.09871795 0.567610175 1.445346708 0.54797544 0.606148488 0.55957646 1 17.34107471 HNS(ph)MEDAR ddPTM_HeLa_A485_30min_R1 1 HNSMEDAR 8 0 Q96RY7-2;Q96RY7 Q96RY7-2 IFT140 Intraflagellar transport protein 140 homolog 1 0 HNS(1)MEDAR 60.49 0.013977 0 53758 83588 58834 71929 62301 68050 81496 94161 59044 86148 TRUE FALSE FALSE 65716.28164 93362.88948 80599.14489 75858.29914 56098.09369 71612.99277 64083.71384 71067.86711 70893.58922 64672.88904 1.016133385 1.443617115 1.246258611 1.172953617 0.86741283 1.107310866 0.99088992 1.098881899 1.096187139 1 15.98087344 -5.533909197 24.4077806 1.032704368 1.248404748 0.402032937 0.116695087 149.5079685 330823.4393 0.033175089 0.042871335 2.92E-06 5.533909197 0.215700381 HNS(ph)PSGHLTHSR ddPTM_HeLa_A485_30min_R1 1 HNSPSGHLTHSR 12 0 A0A087WVA8;Q8IWB9;Q8IWB9-2;J3KRZ8 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 0 HNS(0.869)PS(0.131)GHLTHSR 82.529 0.0031652 65904000 16637 24379 24572 9775.7 27470 14916 17729 22980 17774 16786 TRUE FALSE FALSE 20337.84325 27229.91198 33662.20533 10309.72174 24734.99035 15696.9787 13941.05432 17344.11897 21341.07877 12601.55912 1.613914838 2.160836744 2.671273054 0.818130648 1.962851589 1.245637825 1.106295989 1.376347069 1.693526853 1 13.62131462 -5.261167152 24.99999838 1.345812605 2.149891051 0.487689814 0.390799495 21.22732958 1949329.626 0.106252289 0.17027281 5.48E-06 5.261167152 0.804078446 HNS(ph)SDGFFNNGPLR ddPTM_HeLa_A485_30min_R1 3 HNSSDGFFNNGPLR 14 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 HNS(0.628)S(0.372)DGFFNNGPLR;HNS(0.993)S(0.007)DGFFNNGPLR;HNS(0.974)S(0.026)DGFFNNGPLR ;; 243.61 1.45E-35 700400000 357113 379367 369494 446289 542682 322956 504253 435609 361656 596308 TRUE FALSE FALSE 436551.5548 423730.6706 506185.2065 470668.638 488650.6746 339865.4768 396515.2272 328775.2097 434237.0419 447659.3898 0.97518686 0.94654704 1.130737382 1.051399007 1.091568022 0.759205513 0.885752061 0.734431617 0.970016606 1 18.77204192 -6.253188417 24.99579841 0.854275066 1.039722135 0.458846541 0.091092189 516.8303336 1565707.377 0.029514632 0.029038889 5.58E-07 6.253188417 0.18544707 HNS(ph)SDGFFNNGPLR ddPTM_HeLa_A486_30min_R1 2 HNSSDGFFNNGPLR 14 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 HNS(0.999)S(0.001)DGFFNNGPLR;HNS(0.999)S(0.001)DGFFNNGPLR ; 243.37 1.49E-35 564520000 409120 484970 324280 141766 517810 492540 550460 508120 340830 508130 TRUE FALSE FALSE 380442.8007 446539.211 449849.9005 330038.4125 452861.4414 431775.4226 412729.0858 392432.1682 370373.4188 380890.9406 0.998823443 1.172354507 1.181046469 0.866490581 1.188953039 1.133593311 1.083588612 1.030300609 0.972387052 1 18.53901845 -7.419204269 2.778419935 0.987723664 1.093319046 0.169703483 0.092543636 0.508253755 7.387035389 0.066282846 0.025441722 3.81E-08 7.419204269 0.105595382 HNS(ph)TTSSTSSGGYR ddPTM_HeLa_A485_30min_R1 5 HNSTTSSTSSGGYR 14 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 HNS(0.623)T(0.339)T(0.038)SSTSSGGYR;HNS(0.7)T(0.246)T(0.052)S(0.001)STSSGGYR;HNS(0.496)T(0.496)T(0.006)S(0.001)STSSGGYR;HNS(0.617)T(0.378)T(0.004)SSTSSGGYR;HNS(0.707)T(0.279)T(0.014)SSTSSGGYR ;;;; 179.33 2.76E-17 1129291000 255722 347857 354532 213169 495938 297117 418381 402285 411847 430287 TRUE FALSE FALSE 312606.4767 388535.8502 485688.1401 224813.8827 446560.6714 312673.5867 328990.4815 303623.973 494500.9152 323024.3697 0.967748894 1.20280662 1.503565011 0.695965703 1.382436476 0.96795665 1.018469541 0.939941383 1.530847086 1 18.30128348 -5.229876636 24.99922904 1.079818684 1.222516645 0.068199521 0.250767661 2075.365874 1643788.574 0.06534637 0.113168678 5.89E-06 5.229876636 0.142697961 HNS(ph)TTSSTSSGGYR ddPTM_HeLa_A486_30min_R1 2 HNSTTSSTSSGGYR 14 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 HNS(0.978)T(0.021)TSSTSSGGYR;HNS(0.487)T(0.487)T(0.026)SSTSSGGYR ; 201.16 8.10E-22 1022150000 222576 228962 155335 21622.8 230258 221143 272650 299270 198533 134528 TRUE FALSE FALSE 206974.5718 210818.2173 215484.872 50338.97116 201376.8946 193860.6251 204430.0862 231132.754 215742.0003 100841.3132 2.052477951 2.090593732 2.136870943 0.499189961 1.996968189 1.922432572 2.02724538 2.29204427 2.139420774 1 16.62172728 HNS(ph)WDTVNTVLPEDPEVADLFSR ddPTM_HeLa_A485_30min_R1 1 HNSWDTVNTVLPEDPEVADLFSR 23 0 Q8N961 Q8N961 ABTB2 Ankyrin repeat and BTB/POZ domain-containing protein 2 1 0 HNS(0.498)WDT(0.498)VNT(0.004)VLPEDPEVADLFSR 89.511 0.0016003 87724000 56168 64723 50640 63832 70129 48717 74750 78410 56069 91351 TRUE FALSE FALSE 68662.37782 72291.79183 69373.84331 67318.98053 63146.71052 51267.74679 58779.05185 59179.82456 67321.534 68578.87689 1.00121759 1.054140795 1.011592001 0.981628507 0.920789511 0.747573438 0.857101407 0.862945374 0.981665741 1 16.06547666 -5.735196983 2.771757785 0.876080661 1.021681586 0.419523351 0.067779077 0.23488708 3.69468081 0.02208347 0.028174666 1.84E-06 5.735196983 0.145600925 HNS(ph)WDTVNTVLPEDPEVADLFSR ddPTM_HeLa_A486_30min_R1 2 HNSWDTVNTVLPEDPEVADLFSR 23 0 Q8N961 Q8N961 ABTB2 Ankyrin repeat and BTB/POZ domain-containing protein 2 1 0 HNS(0.498)WDT(0.498)VNT(0.003)VLPEDPEVADLFSR;HNS(0.456)WDT(0.456)VNT(0.088)VLPEDPEVADLFSR ; 92.29 0.0013408 125412000 101965 103262 86578 51067 111540 106771 128312 121914 93877 136212 TRUE FALSE FALSE 94817.78005 95079.14305 120103.3202 118886.5568 97549.61313 93598.67959 96206.98045 94156.84356 102014.3339 102103.6286 0.928642609 0.931202391 1.176288462 1.164371516 0.955398103 0.916702774 0.942248398 0.922169416 0.999125451 1 16.63967461 -5.953582071 24.99753859 0.94873628 1.051798632 0.244797015 0.0805123 183.3930613 98762.15017 0.027421165 0.031092668 1.11E-06 5.953582071 0.103062351 HNS(ph)WSSSSR ddPTM_HeLa_A485_30min_R1 6 HNSWSSSSR 9 0 H3BQ37;H3BPW9;Q96F86 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 HNS(1)WSSSSR;HNS(1)WSSSSR;HNS(1)WSSSSR;HNS(0.999)WS(0.001)SSSR;HNS(0.885)WS(0.104)S(0.003)S(0.007)SR;HNS(0.962)WS(0.037)S(0.001)SSR ;;;;; 110.64 0.0009111 4320030000 1106690 1825230 2096190 828400 2393070 1344900 1481230 1492040 1752940 1392760 TRUE FALSE FALSE 1352869.372 2038674.771 2871657.911 873653.3944 2154807.548 1415316.884 1164753.11 1126114.851 2104738.979 1045570.564 1.293905375 1.949820358 2.746498429 0.835575737 2.060891558 1.35363115 1.113988047 1.077033812 2.013005197 1 19.995859 -5.861116973 1.19344014 1.317240084 1.889823784 0.137256996 0.541393964 0.901910985 2.717309017 0.231502225 0.30495251 1.38E-06 5.861116973 0.5725837 HNS(ph)WSSSSR ddPTM_HeLa_A486_30min_R1 6 HNSWSSSSR 9 0 H3BQ37;H3BPW9;Q96F86 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 HNS(1)WSSSSR;HNS(1)WSSSSR;HNS(1)WSSSSR;HNS(1)WSSSSR;HNS(0.905)WS(0.094)SSSR;HNS(1)WSSSSR ;;;;; 142.47 0.00011662 5853960000 1757010 2284480 2437360 110979 2825270 1726010 1737010 1909920 2043830 839160 TRUE FALSE FALSE 1633852.672 2103449.485 3381171.067 258364.7206 2470898.292 1513072.435 1302391.726 1475072.909 2220990.83 629028.874 2.597420786 3.343963325 5.375223947 0.410735868 3.928115853 2.405410145 2.070480036 2.345000318 3.53082493 1 19.26276672 -9.489495471 0.174653107 6.48E-11 3.623477135 0.168731021 1.240783431 31.22272081 1.496440891 26.00587622 5.889261287 3.24E-10 9.489495471 3.623477135 HNS(ph)WSSSSRHPNQATPK ddPTM_HeLa_A485_30min_R1 2 HNSWSSSSRHPNQATPK 17 1 H3BQ37;H3BPW9;Q96F86 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 HNS(0.96)WS(0.04)SSSRHPNQATPK;HNS(0.999)WS(0.001)SSSRHPNQATPK ; 181.83 8.20E-18 413330000 155136 492030 314260 65630 645340 364980 617020 928710 268730 155100 TRUE FALSE FALSE 189645.468 549568.6284 430517.8514 69215.20072 581087.6837 384089.7884 485188.6364 700942.4163 322661.6461 116436.4244 1.628746923 4.719902996 3.697449949 0.594446292 4.99060055 3.298708204 4.166983303 6.019958273 2.771140111 1 16.82918292 HNS(ph)WSSSSRHPNQATPK ddPTM_HeLa_A486_30min_R1 1 HNSWSSSSRHPNQATPK 17 1 H3BQ37;H3BPW9;Q96F86 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 HNS(0.968)WS(0.03)S(0.001)SSRHPNQATPK 131.59 6.88E-06 59618000 150530 105400 102360 11240 249970 71636 137780 143930 86538 49510 TRUE FALSE FALSE 139978.6243 97047.72014 141996.5333 26167.28804 218616.4317 62798.27866 103305.9867 111160.281 94039.18352 37112.37374 3.771750772 2.614969358 3.826123715 0.705082575 5.890661514 1.692111615 2.783599546 2.995235005 2.533903764 1 15.17961266 -9.965492353 0.319491242 7.91E-11 3.192795788 0.189614452 1.290338941 23.40500224 1.968388042 22.8917846 1.210516671 1.08E-10 9.965492353 3.192795788 HNSAS(ph)VENVSLR ddPTM_HeLa_A486_30min_R1 1 HNSASVENVSLR 12 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 HNS(0.001)AS(0.999)VENVSLR 110.04 0.00031392 118040000 124390 139930 119900 6129.6 203400 86200 58652 89745 121510 26786 TRUE FALSE FALSE 115670.9034 128841.4372 166328.491 14270.01857 177887.6754 75565.52042 43976.64924 69312.02262 132042.5846 20078.61125 5.760901583 6.416850028 8.283864304 0.710707449 8.85956071 3.763483414 2.190223651 3.4520327 6.576280748 1 14.29337187 -6.411859192 0.13793243 5.28E-10 9.442214072 0.23091864 2.418878735 16.69337823 1.136404618 25.28513645 45.96623155 3.87E-07 6.411859192 9.442214071 HNVLHLWPFTIHDLR ddPTM_HeLa_A486_30min_R1 1 HNVLHLWPFTIHDLR 15 0 Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4;Q5TED7 Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 0 0 81.632 0.0061779 2165400 2492.2 1642.3 1568.8 932.68 2693.5 1714.5 2234.3 2700.3 2038.3 2828.4 FALSE FALSE TRUE 2317.50965 1512.158167 2176.281374 2171.326175 2355.656114 1502.982422 1675.254508 2085.500637 2214.981485 2120.15023 1.093087469 0.713231612 1.026475078 1.024137886 1.11107981 0.708903737 0.790158397 0.98365701 1.044728554 1 11.04995078 -7.512620138 24.17579252 1.019640503 0.919959482 0.07740112 0.13922766 888.8802616 2094806.517 0.086798497 0.037189203 3.07E-08 7.512620138 -0.099681021 HNYLPFIMELLK ddPTM_HeLa_A486_30min_R1 1 HNYLPFIMELLK 12 0 Q5LJA5;Q5LJA9;Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5;H0Y4K0;H0Y636;H0Y4E0;H0Y6Y4 Q5LJA5 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 0 0 88.441 0.0071935 2224300 2403.2 2750.3 1896.8 2228.7 3731.2 3744 4589.8 4273.8 2912.9 3501.5 FALSE FALSE TRUE 2234.74809 2532.356212 2631.291758 5188.526232 3263.198104 3282.103346 3441.383494 3300.749036 3165.392517 2624.701609 0.85142939 0.964816802 1.002510818 1.976806131 1.243264412 1.250467228 1.311152278 1.257571156 1.206000906 1 11.3579377 -5.025892323 24.99525843 1.337598405 0.927008007 0.35080608 0.238875121 743.5807865 717819.1361 0.064352761 0.112006596 9.42E-06 5.025892323 -0.410590398 HPALEK(ac)DIR ddPTM_HeLa_A485_30min_R1 1 HPALEKDIR 9 1 Q9NQS3;Q9NQS3-2;Q9NQS3-3 Q9NQS3 PVRL3 Nectin-3 0 1 HPALEK(1)DIR 76.827 0.030494 146370000 91127 137880 158870 75309 268100 72016 196840 137570 111720 246290 FALSE TRUE FALSE 111397.8868 154003.8666 217642.6241 79422.93998 241407.0226 75786.6464 154783.526 103830.7418 134141.1792 184894.4356 0.602494534 0.832928617 1.177118302 0.429558303 1.305647852 0.40989144 0.837145398 0.561567694 0.72550144 1 17.49634228 -6.333130595 24.99999996 0.687565306 0.860192439 0.0770172 0.276745101 394.9065855 137708.9173 0.091284623 0.080505476 4.64E-07 6.333130595 0.172627133 HPASLTSSGSSGS(ph)PSSSIK ddPTM_HeLa_A485_30min_R1 1 HPASLTSSGSSGSPSSSIK 19 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 HPASLTSSGSS(0.001)GS(0.96)PS(0.037)S(0.002)SIK 215.2 2.01E-27 403870000 260810 239890 201240 237330 339520 253670 310520 325380 239160 383810 TRUE FALSE FALSE 318826.2847 267943.0487 275687.0503 250294.7369 305716.1967 266951.769 244174.8653 245580.0448 287157.2183 288133.2305 1.106523826 0.929927618 0.956804079 0.868677093 1.061023736 0.926487266 0.847437364 0.852314203 0.996612636 1 18.13637653 -6.505311206 24.46642266 0.908237955 0.975589445 0.110205699 0.07833614 1140.342696 1588167.248 0.027613418 0.023829346 3.12E-07 6.505311206 0.06735149 HPASLTSSGSSGS(ph)PSSSIK ddPTM_HeLa_A486_30min_R1 1 HPASLTSSGSSGSPSSSIK 19 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 HPASLTSSGSS(0.002)GS(0.996)PS(0.001)SSIK 166.43 1.35E-12 489650000 598150 598730 557150 54078 703540 443780 584520 577440 573340 414160 TRUE FALSE FALSE 556222.7738 551284.4543 772893.401 125896.317 615295.4529 389030.9356 438266.9136 445969.5174 623037.5728 310451.6403 1.79165674 1.775749852 2.489577444 0.405526338 1.98193655 1.253112837 1.411707515 1.436518477 2.006874798 1 18.24400903 -5.219457085 24.99950967 1.398761208 1.994669903 0.290850458 0.470351364 674.1970662 401468.2404 0.121378462 0.210231182 6.03E-06 5.219457085 0.595908695 HPELTKPPPLMAAEPTAPLSHSASSDPADRLS(ph)PFLAAR ddPTM_HeLa_A485_30min_R1 1 HPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAAR 38 2 Q9ULP9-2;Q9ULP9 Q9ULP9-2 TBC1D24 TBC1 domain family member 24 1 0 HPELTKPPPLMAAEPTAPLSHSASSDPADRLS(1)PFLAAR 255.83 3.52E-65 1396600000 428780 360620 392570 458050 541490 447200 553340 396560 466220 1003600 TRUE FALSE FALSE 524160.6317 402791.372 537797.9792 483072.1117 487577.3543 470614.7005 435114.3886 299303.0382 559786.0776 753420.9899 0.695707498 0.534616605 0.713808065 0.64117156 0.647151275 0.624637098 0.577518273 0.397258694 0.742992411 1 19.5230967 -8.010885783 24.94495704 1.000000012 0.605461277 0.670735918 0.085095531 286.6676605 656904.6195 0.082669395 0.021345146 9.75E-09 8.010885783 -0.394538734 HPELTKPPPLMAAEPTAPLSHSASSDPADRLS(ph)PFLAAR ddPTM_HeLa_A486_30min_R1 2 HPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAAR 38 2 Q9ULP9-2;Q9ULP9 Q9ULP9-2 TBC1D24 TBC1 domain family member 24 1 0 HPELTKPPPLMAAEPTAPLS(0.01)HS(0.064)AS(0.052)S(0.052)DPADRLS(0.822)PFLAAR;HPELTKPPPLMAAEPT(0.007)APLS(0.006)HS(0.001)AS(0.001)S(0.006)DPADRLS(0.979)PFLAAR ; 103.96 2.96E-05 2014770000 260148 342743 247249 48216 385959 337384 343734 313383 365386 283816 TRUE FALSE FALSE 241912.9686 315582.7964 342990.4344 112249.2847 337548.4233 295760.9923 257728.1176 242032.532 397057.9527 212746.6263 1.137094265 1.483373917 1.612201521 0.527619576 1.586621744 1.390202973 1.211432219 1.137656264 1.866341947 1 17.69877673 HPEPVPEEGS(ph)EDELPPQVHKV ddPTM_HeLa_A485_30min_R1 3 HPEPVPEEGSEDELPPQVHKV 21 1 Q7Z3C6;H7C152;Q7Z3C6-2 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 HPEPVPEEGS(1)EDELPPQVHKV;HPEPVPEEGS(1)EDELPPQVHKV;HPEPVPEEGS(1)EDELPPQVHKV ;; 219.38 1.38E-35 2554250000 1009730 1067640 897850 1254590 1305910 1093480 1419690 1291040 1063980 1819020 TRUE FALSE FALSE 1234340.955 1192491.211 1230002.078 1323125.075 1175889.015 1150732.922 1116361.634 974410.4157 1277511.027 1365571.791 0.903900449 0.873254134 0.900723116 0.968916526 0.861096446 0.84267479 0.817504903 0.71355488 0.935513633 1 20.38107373 -5.983279884 24.39786724 0.842365303 0.909023329 0.068058681 0.074630649 348.178388 508055.5856 0.022499144 0.025504622 1.04E-06 5.983279884 0.066658026 HPEPVPEEGS(ph)EDELPPQVHKV ddPTM_HeLa_A486_30min_R1 3 HPEPVPEEGSEDELPPQVHKV 21 1 Q7Z3C6;H7C152;Q7Z3C6-2 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 HPEPVPEEGS(1)EDELPPQVHKV;HPEPVPEEGS(1)EDELPPQVHKV;HPEPVPEEGS(1)EDELPPQVHKV ;; 217.7 1.54E-35 2300790000 1165430 1109410 764370 404467 1218890 1095340 1215160 1235610 1006920 1353440 TRUE FALSE FALSE 1083739.375 1021496.311 1060354.535 941619.6166 1066005.451 960208.0874 911114.1153 954288.5762 1094200.636 1014529.815 1.068218361 1.006866724 1.045168431 0.928134002 1.050738416 0.946456254 0.898065392 0.94062152 1.078529798 1 19.95237983 -4.577512814 0.88446511 0.971910186 1.084046926 0.183514153 0.055180156 2.445950675 2.087152372 0.020792508 0.242534009 2.65E-05 4.577512814 0.112136739 HPGAHQGNLASGLHSNAIASPGS(ph)PSLGR ddPTM_HeLa_A486_30min_R1 1 HPGAHQGNLASGLHSNAIASPGSPSLGR 28 0 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 HPGAHQGNLASGLHSNAIAS(0.039)PGS(0.958)PS(0.003)LGR 176.5 7.31E-15 272460000 55549 76515 82839 18038 102370 67566 57713 76316 74391 49683 TRUE FALSE FALSE 51655.30196 70451.67274 114916.4793 41993.37559 89529.80004 59230.39388 43272.59697 58940.51277 80839.27178 37242.05342 1.387015409 1.891723637 3.085664424 1.12757949 2.403997412 1.590416973 1.161928331 1.58263327 2.170644859 1 15.184645 -6.493171312 22.66035992 1.505757024 1.989366413 0.148614453 0.575397242 443.8580768 338568.2673 0.20025183 0.176199905 3.21E-07 6.493171312 0.483609389 HPHLSTLSLPRR ddPTM_HeLa_A486_30min_R1 1 HPHLSTLSLPRR 12 1 O95140-2 O95140-2 0 0 74.962 0.022507 70896000 110500 212860 432110 24593 347640 84062 81685 124840 231190 47372 FALSE FALSE TRUE 102754.5206 195992.1984 599434.5643 57253.74686 304035.7496 73691.28512 61246.54902 96416.65724 251229.7353 35509.74286 2.893699372 5.519392217 16.88084779 1.6123391 8.562037489 2.075241305 1.724781541 2.715216993 7.074952256 1 15.11592729 -6.265066789 24.68518672 2.950660799 7.245418212 0.202340335 4.139596954 452.6512537 3080361.874 1.436481582 1.316607938 5.43E-07 6.265066789 4.294757414 HPKGEEGS(ph)DDDETENGPKPK ddPTM_HeLa_A485_30min_R1 1 HPKGEEGSDDDETENGPKPK 20 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 HPKGEEGS(1)DDDETENGPKPK 152.35 4.88E-10 287700000 66676 41401 23386 173650 105680 67857 187290 179040 62496 276730 TRUE FALSE FALSE 81507.84617 46242.48681 32037.45457 183136.0598 95158.12814 71409.88759 147273.9615 135130.1593 75038.37395 207746.3038 0.392343183 0.222591141 0.154214318 0.881537031 0.458049681 0.34373602 0.708912547 0.650457586 0.361201969 1 17.66446328 -14 0.085022303 2.682860557 2.78E-13 0.413243882 0.204453814 238.4164581 1.419420494 74.38503943 6.000313282 1.00E-14 14 -2.682860557 HPKGEEGS(ph)DDDETENGPKPK ddPTM_HeLa_A486_30min_R1 2 HPKGEEGSDDDETENGPKPK 20 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 HPKGEEGS(1)DDDETENGPKPK;HPKGEEGS(1)DDDETENGPKPK ; 145.14 9.52E-10 1144820000 137987 107471 32992 186276 133058 188787 306653 306727 84920 331420 TRUE FALSE FALSE 128314.8239 98954.60656 45767.38596 433659.9419 116368.6249 165496.3794 229925.176 236891.9579 92280.93397 248430.2748 0.516502363 0.398319434 0.184226282 1.745600218 0.468415635 0.666168322 0.925511901 0.953555109 0.371456072 1 17.92248147 HPNYS(ph)PPGS(ph)PIEK ddPTM_HeLa_A485_30min_R1 2 HPNYSPPGSPIEK 13 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 2 0 HPNY(0.026)S(0.974)PPGS(1)PIEK;HPNY(0.006)S(0.995)PPGS(0.999)PIEK ; 87.352 0.0017444 703640000 750570 717190 594270 1081750 964670 757840 1170610 967830 658320 1334850 TRUE FALSE FALSE 917531.7071 801059.1318 814115.2026 1140843.263 868624.0676 797519.3306 920499.6105 730468.175 790438.7855 1002096.461 0.915612162 0.799383256 0.812412012 1.138456534 0.866806841 0.79585086 0.918573856 0.728939981 0.788785128 1 19.93458996 -5.994057781 24.99942786 0.833701144 0.913415627 0.076198422 0.110967124 396.1989728 1666825.162 0.035221766 0.039829186 1.01E-06 5.994057781 0.079714483 HPNYS(ph)PPGS(ph)PIEK ddPTM_HeLa_A486_30min_R1 1 HPNYSPPGSPIEK 13 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 2 0 HPNY(0.003)S(0.997)PPGS(1)PIEK 91.622 0.0014144 355860000 503530 491450 330100 212540 510970 556820 664340 587440 449470 703110 TRUE FALSE FALSE 468235.1472 452505.7122 457923.5604 494803.8612 446879.378 488125.2097 498115.1053 453692.7357 488430.4215 527046.6795 0.888413048 0.858568567 0.868848203 0.9388236 0.847893356 0.92615176 0.94510624 0.860820784 0.926730858 1 19.00757122 -14 0.149337718 1.375928451 0.861931931 0.514455882 0.032411182 111.3188496 0.988257748 12.39414154 0.16594613 1.00E-14 14 -0.51399652 HPPDEDFRGPPDEDFRHPPDEDFRS(ph)PQEEDFR ddPTM_HeLa_A486_30min_R1 2 HPPDEDFRGPPDEDFRHPPDEDFRSPQEEDFR 32 3 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 HPPDEDFRGPPDEDFRHPPDEDFRS(1)PQEEDFR;HPPDEDFRGPPDEDFRHPPDEDFRS(1)PQEEDFR ; 96.316 7.85E-05 203634000 115708 107952 97829 37871 116084 115649 109517 105640 107317 125825 TRUE FALSE FALSE 107597.4667 99397.49037 135711.0088 88165.60189 101523.6623 101381.4022 82114.68825 81588.0781 116619.324 94317.60102 1.140799443 1.053859399 1.438872568 0.934773584 1.076402084 1.074893775 0.870618923 0.865035552 1.236453458 1 16.5252394 -5.314607616 24.99993016 1.002561742 1.195447159 0.311802884 0.137332943 392.615297 184608.4587 0.038438448 0.057013472 4.85E-06 5.314607616 0.192885417 HPPEQTNGVHT(ph)PPHVASALAGAVS(ph)PGALR ddPTM_HeLa_A485_30min_R1 2 HPPEQTNGVHTPPHVASALAGAVSPGALR 29 0 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 2 0 HPPEQT(0.001)NGVHT(0.999)PPHVASALAGAVS(1)PGALR;HPPEQTNGVHT(1)PPHVASALAGAVS(1)PGALR ; 213.75 8.89E-30 1121430000 93309 142724 148934 113965 171754 105654 153749 145627 125582 171211 TRUE FALSE FALSE 114065.2651 159414.3303 204030.8843 120190.6194 154653.5687 111185.8801 120899.2701 109911.7499 150785.1555 128531.2486 0.887451623 1.240276835 1.587402958 0.93510816 1.203237115 0.865049405 0.940621611 0.855136405 1.173140051 1 16.97175963 -5.830997594 1.792467823 0.964642473 1.219267403 0.181445721 0.199536441 0.531248623 3.52034032 0.072138702 0.09034063 1.48E-06 5.830997594 0.25462493 HPPEQTNGVHT(ph)PPHVASALAGAVS(ph)PGALR ddPTM_HeLa_A486_30min_R1 1 HPPEQTNGVHTPPHVASALAGAVSPGALR 29 0 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 2 0 HPPEQT(0.001)NGVHT(0.999)PPHVASALAGAVS(1)PGALR 195.07 1.33E-21 790310000 116380 128800 103280 29665 130020 93620 124960 119830 110030 116290 TRUE FALSE FALSE 108222.363 118593.4189 143272.7819 69061.61919 113711.6792 82070.11626 93693.68631 92547.32487 119567.489 87170.22708 1.241506035 1.360480784 1.643597668 0.79226155 1.30447841 0.941492514 1.074835864 1.061685027 1.371655128 1 16.41154785 -5.255170154 24.99996638 1.08423822 1.409723407 0.419460615 0.181618626 497.4008209 1983493.697 0.047807555 0.080208264 5.56E-06 5.255170154 0.325485187 HPPFS(ph)PPEPPLSSPASQHK ddPTM_HeLa_A485_30min_R1 1 HPPFSPPEPPLSSPASQHK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 HPPFS(1)PPEPPLSSPASQHK 117.38 1.89E-05 84280000 75923 110360 109940 55675 194950 64518 123840 101380 118850 121480 TRUE FALSE FALSE 92811.80942 123265.642 150611.381 58716.38427 175540.0935 67896.06272 97380.57232 76516.39604 142702.1048 91197.27167 1.017703794 1.351637387 1.651489987 0.643839264 1.92483931 0.744496644 1.067801378 0.839020671 1.564762873 1 16.47670304 HPPFS(ph)PPEPPLSSPASQHK ddPTM_HeLa_A486_30min_R1 1 HPPFSPPEPPLSSPASQHK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 HPPFS(1)PPEPPLSSPASQHK 133.38 1.90E-06 195980000 86486 112050 96031 7702.1 135200 88759 131300 121450 113260 57440 TRUE FALSE FALSE 80423.77801 103170.7499 133216.775 17930.87804 118241.9553 77808.81702 98447.35125 93798.48623 123077.468 43056.65013 1.867859617 2.396162953 3.093988376 0.416448516 2.746194954 1.807126583 2.286460999 2.178490104 2.85850078 1 15.39394846 -9.211677663 13.33959574 0.999998064 2.172899151 0.200518655 0.708650466 0 0 0.656015505 0.159107131 6.14E-10 9.211677663 1.172901087 HPPFSPPEPPLS(ph)SPASQHK ddPTM_HeLa_A485_30min_R1 4 HPPFSPPEPPLSSPASQHK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 HPPFSPPEPPLS(0.492)S(0.492)PAS(0.017)QHK;HPPFSPPEPPLS(0.499)S(0.499)PAS(0.001)QHK;HPPFSPPEPPLS(0.651)S(0.349)PASQHK;HPPFSPPEPPLS(0.5)S(0.5)PAS(0.001)QHK ;;; 210.38 3.91E-26 3309200000 1325860 1189900 1199500 1127520 2107860 1062080 1687400 1110330 1487780 2215100 TRUE FALSE FALSE 1620792.983 1329048.454 1643244.965 1189113.563 1897994.057 1117688.867 1326873.205 838019.8266 1786363.799 1662916.336 0.974668988 0.799227493 0.988170559 0.715077203 1.141364732 0.672125736 0.7979194 0.503945874 1.074235523 1 20.66528416 HPPFSPPEPPLS(ph)SPASQHK ddPTM_HeLa_A486_30min_R1 2 HPPFSPPEPPLSSPASQHK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 HPPFSPPEPPLS(0.499)S(0.499)PAS(0.003)QHK;HPPFSPPEPPLS(0.567)S(0.431)PAS(0.001)QHK ; 173.43 5.19E-13 737810000 780200 854360 596400 50769 867730 772170 908500 848530 726050 531330 TRUE FALSE FALSE 725512.009 786657.4021 827342.0521 118192.7977 758891.2121 676907.5162 681183.6909 655338.2423 788984.5986 398281.5096 1.821606054 1.975129106 2.077279593 0.296756929 1.90541412 1.69957053 1.710307093 1.645414679 1.980972201 1 18.60342898 HPPFSPPEPPLSS(ph)PASQHK ddPTM_HeLa_A486_30min_R1 2 HPPFSPPEPPLSSPASQHK 19 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 HPPFSPPEPPLS(0.201)S(0.78)PAS(0.019)QHK;HPPFSPPEPPLS(0.16)S(0.84)PASQHK ; 201.27 1.18E-25 2346130000 789100 844090 566830 94467 860200 783490 914780 869690 745760 560260 TRUE FALSE FALSE 733788.1649 777201.2343 786321.7562 219923.9501 752305.695 686830.9697 685892.3684 671680.5722 810403.0773 419967.2493 1.747250925 1.850623437 1.872340659 0.523669287 1.791343721 1.635439361 1.633204421 1.599364173 1.929681609 1 18.6799173 HPPLYQAGLTPPLS(ph)PPK ddPTM_HeLa_A485_30min_R1 2 HPPLYQAGLTPPLSPPK 17 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 HPPLYQAGLT(0.001)PPLS(0.999)PPK;HPPLYQAGLTPPLS(1)PPK ; 125.28 1.38E-06 0 318030 270240 189275 496900 406380 322680 459560 428080 264340 660140 TRUE FALSE FALSE 388774.6763 301842.2172 259295.6989 524044.3888 365919.3803 339575.0258 361371.2517 323092.7088 317390.6133 495579.247 0.784485385 0.609069526 0.523217428 1.057438123 0.738367037 0.685208325 0.729189638 0.651949634 0.640443714 1 18.91875625 -11.2741564 2.16071586 2.121773385 0.713310179 0.289917386 0.134623808 5851909.929 868201.448 32054085.31 0.036937532 5.32E-12 11.2741564 -1.408463205 HPPLYQAGLTPPLS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 HPPLYQAGLTPPLSPPK 17 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 HPPLYQAGLTPPLS(1)PPK 73.783 0.004593 289010000 219300 169000 114010 139250 140950 206750 250400 238610 147370 348890 TRUE FALSE FALSE 203928.2025 155607.8245 158157.7253 324181.0373 123270.7367 181243.2871 187747.2715 184283.7118 160144.1503 261525.6731 0.779763608 0.595000187 0.604750285 1.239576342 0.471352335 0.693022926 0.717892317 0.704648647 0.61234581 1 17.99659305 -11.09284315 2.550032182 1.493044305 0.714155894 0.164379501 0.194012501 18982474.16 5656353.316 54431585.8 0.048672257 8.08E-12 11.09284315 -0.77888841 HPS(ph)REQLIDYLMLK ddPTM_HeLa_A485_30min_R1 1 HPSREQLIDYLMLK 14 1 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;H0Y9E8;B4DIP2 Q96RT1-6 ERBB2IP Protein LAP2 1 0 HPS(0.979)REQLIDY(0.021)LMLK 41.912 0.037886 89669000 130730 153030 78275 94368 112300 172870 219660 249740 105380 205130 TRUE FALSE FALSE 159810.4375 170925.5273 107232.1798 99523.08489 101119.0177 181921.2059 172727.8465 188490.8734 126528.7994 153994.8661 1.037764709 1.109943023 0.696336069 0.646275343 0.656638888 1.181345914 1.121646785 1.224007515 0.821642971 1 17.23252273 -6.271984217 24.98459203 1.086973993 0.827412693 0.3154647 0.176090428 920.9387925 2182036.084 0.067227912 0.059902692 5.35E-07 6.271984217 -0.2595613 HPS(ph)SPSALR ddPTM_HeLa_A485_30min_R1 1 HPSSPSALR 9 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 HPS(0.495)S(0.495)PS(0.01)ALR 79.986 0.008221 119740000 45748 61390 53202 61389 72377 62485 75383 90141 50386 83886 TRUE FALSE FALSE 55924.48477 68569.02648 72883.63372 64742.52562 65170.89175 65756.61798 59276.80623 68033.77841 60498.00803 62974.76401 0.88804596 1.088833401 1.157346675 1.028070953 1.03487314 1.044174107 0.941278735 1.080333995 0.960670659 1 15.94248619 -6.568853987 24.99642352 1.000902581 1.04724062 0.078898783 0.071554488 342.0656588 185975.937 0.02745906 0.021269664 2.70E-07 6.568853987 0.046338039 HPSKPDPSGECNPDLR ddPTM_HeLa_A485_30min_R1 1 HPSKPDPSGECNPDLR 16 1 Q09028-4;Q09028-3;Q09028-2;Q09028 Q09028-4 RBBP4 Histone-binding protein RBBP4 0 0 83.393 0.00848 106580000 93602 103960 106060 91150 140760 111450 129960 131690 89874 135810 FALSE FALSE TRUE 114423.442 116117.2177 145296.0075 96129.2937 126745.4402 117285.3497 102192.9843 99392.82102 107910.8874 101955.0664 1.122292849 1.138905812 1.425098454 0.942859409 1.243149994 1.150363134 1.002333557 0.974868876 1.058416136 1 16.63757394 -6.721862935 4.975952962 1.006050558 1.175241875 0.327544641 0.113629331 0.228844609 13.07210838 0.044511604 0.032996902 1.90E-07 6.721862935 0.169191317 HPSS(ph)PSALR ddPTM_HeLa_A485_30min_R1 6 HPSSPSALR 9 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 HPSS(1)PSALR;HPSS(0.997)PS(0.002)ALR;HPSS(1)PSALR;HPSS(1)PSALR;HPS(0.002)S(0.998)PSALR;HPS(0.037)S(0.958)PS(0.006)ALR ;;;;; 169.82 4.84E-06 10842236000 122462 228410 225454 80926 230608 163479 171042 193944 171100 122888 TRUE FALSE FALSE 149703.2494 255120.5626 308858.8165 85346.78246 207647.8578 172038.5077 134497.4794 146378.9299 205438.2006 92254.28319 1.622724108 2.765406156 3.347907608 0.92512542 2.250820782 1.864829488 1.457899566 1.586689798 2.22686897 1 16.49332827 -5.261625912 24.99999841 1.670705918 2.597351944 0.36950478 0.572982789 18.43336005 2470678.968 0.155919938 0.248805232 5.47E-06 5.261625912 0.926646026 HPSS(ph)PSALR ddPTM_HeLa_A486_30min_R1 5 HPSSPSALR 9 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 HPSS(1)PSALR;HPSS(1)PSALR;HPS(0.002)S(0.998)PSALR;HPSS(1)PSALR;HPS(0.001)S(0.999)PSALR ;;;; 163.12 8.58E-06 8442840000 165452 210027 200534 15004 227651 133574 167690 175078 165067 94640 TRUE FALSE FALSE 153854.6692 193383.6956 278186.1353 34930.07026 199096.8888 117094.998 125732.1884 135216.5613 179375.1405 70941.528 2.168753247 2.725958984 3.921344002 0.492378318 2.806492818 1.650584661 1.772335498 1.906028319 2.528492768 1 16.11434278 -5.251011023 24.98142246 1.816849072 2.917412633 0.349970322 0.74497652 838.2528922 2008054.746 0.194570265 0.332332292 5.61E-06 5.251011023 1.100563561 HPSSPCS(ph)VKHSPTR ddPTM_HeLa_A485_30min_R1 1 HPSSPCSVKHSPTR 14 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 HPSS(0.001)PCS(0.53)VKHS(0.438)PT(0.031)R 55.589 0.024004 37219000 21236 34213 29453 15429 36064 28927 33583 42776 30659 25065 TRUE FALSE FALSE 25959.87494 38213.91274 40348.89034 16271.8472 32473.34153 30441.57299 26407.7177 32285.11893 36811.98008 18816.75679 1.379614735 2.030844803 2.144306312 0.864753017 1.725767192 1.617790639 1.403414946 1.715764268 1.956340324 1 14.19973037 HPSSPCSVK(ac)HSPTR ddPTM_HeLa_A485_30min_R1 2 HPSSPCSVKHSPTR 14 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ; HPSSPCSVK(1)HSPTR;HPSSPCSVK(1)HSPTR 148.52 2.52E-06 40277000 13019.8 14415 19487.4 16598.9 31444 10172.3 18314.3 13681.7 15491.5 24374.4 FALSE TRUE FALSE 15916.00959 16100.70886 26696.6002 17505.65588 28313.32495 10704.9059 14401.30019 10326.24162 18600.50195 18298.31066 0.869807595 0.879901383 1.458965295 0.956681532 1.547319066 0.585021541 0.787028948 0.564327594 1.01651471 1 14.15942284 -6.287153372 24.98499993 0.763127188 1.135198588 0.325183103 0.25184795 873.6447218 848873.8087 0.086674336 0.076466553 5.16E-07 6.287153372 0.3720714 HPSSPCSVK(ac)HSPTR ddPTM_HeLa_A486_30min_R1 1 HPSSPCSVKHSPTR 14 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 HPSSPCSVK(1)HSPTR 109.07 0.00052779 14803000 5115.5 10547 10557 3519.2 15686 9516.4 9991.4 13159 8160.7 8544.2 FALSE TRUE FALSE 4756.929866 9711.217308 14644.95313 8192.875451 13718.51561 8342.363324 7491.446042 10162.98296 8868.076047 6404.676707 0.742727554 1.516269712 2.286603024 1.279202031 2.141952864 1.302542455 1.169683715 1.586806552 1.384625088 1 12.64491003 HPTGNSITKS(ph)PPLMAK ddPTM_HeLa_A485_30min_R1 1 HPTGNSITKSPPLMAK 16 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HPTGNSITKS(1)PPLMAK 253.83 1.07E-50 642050000 709470 1129800 784470 467880 1631500 1299100 1928600 2488600 1078900 1219700 TRUE FALSE FALSE 867289.1539 1261920.282 1074678.098 493439.0997 1469062.131 1367118.867 1516538.855 1878266.948 1295425.334 915651.2369 0.947182856 1.37816696 1.173676236 0.538894155 1.604390484 1.493056321 1.65624071 2.051290789 1.41475846 1 19.80443867 -5.814850863 24.99453494 1.592991134 1.047542362 0.390629905 0.316477344 93.15286085 43591.35147 0.097324499 0.110355709 1.53E-06 5.814850863 -0.545448773 HPTGNSITKS(ph)PPLMAK ddPTM_HeLa_A486_30min_R1 3 HPTGNSITKSPPLMAK 16 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HPTGNSITKS(1)PPLMAK;HPT(0.112)GNS(0.136)IT(0.178)KS(0.575)PPLMAK;HPTGNSIT(0.003)KS(0.997)PPLMAK ;; 275.23 1.01E-58 1301350000 1558650 1184240 831690 109665 1721680 1231130 1715390 1618660 1094910 859500 TRUE FALSE FALSE 1449396.684 1090396.509 1153742.641 255305.6622 1505730.84 1079245.698 1286181.278 1250126.453 1189817.68 644275.6056 2.249653209 1.692437988 1.790759469 0.396267777 2.337091188 1.67513047 1.996321554 1.94035975 1.846752648 1 19.29731845 HPTT(ph)PSSTAK ddPTM_HeLa_A485_30min_R1 1 HPTTPSSTAK 10 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 HPT(0.014)T(0.986)PSSTAK 115.14 0.00063764 266240000 310320 357410 281700 316710 402800 334240 471900 571240 307200 446050 TRUE FALSE FALSE 379349.6134 399205.9904 385912.5525 334011.0653 362695.8177 351740.2896 371074.7099 431142.4943 368852.2222 334857.9439 1.132867296 1.192165208 1.15246647 0.997470932 1.083133383 1.050416441 1.108155612 1.287538498 1.101518506 1 18.35318967 -10.90852466 2.213641851 0.922757565 1.123192463 0.194879672 0.074913469 6133795.578 2845901.699 2461998.371 0.020219825 1.23E-11 10.90852466 0.200434897 HPTT(ph)PSSTAK ddPTM_HeLa_A486_30min_R1 2 HPTTPSSTAK 10 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 HPT(0.192)T(0.76)PS(0.048)STAK;HPT(0.003)T(0.997)PSSTAK ; 147.26 6.00E-06 330410000 574420 422840 421410 167288 570990 593930 618200 597090 514780 509930 TRUE FALSE FALSE 534156.1243 389332.6184 584591.2378 389454.9183 499371.1099 520656.9552 463519.8213 461145.6414 559401.5449 382240.2089 1.397435727 1.018554849 1.52938185 1.018874805 1.306432705 1.362119796 1.212640142 1.206428917 1.463481685 1 18.54412002 -10.16358929 12.98029572 1.000001715 1.27060249 0.20842966 0.162569294 2.12E-10 0 0.144442403 0.035032429 6.86E-11 10.16358929 0.270600775 HPVLCQSLLPILVQHITGPVRPR ddPTM_HeLa_A486_30min_R1 1 HPVLCQSLLPILVQHITGPVRPR 23 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 128.55 1.25E-09 8242000 20720 12038 11827 4168.2 14134 12621 16805 19768 14963 19405 FALSE FALSE TRUE 19267.635 11084.06504 16406.73114 9703.780249 12361.18193 11063.94934 12600.21125 15267.25793 16260.00489 14545.86169 1.324612828 0.762008142 1.127931193 0.667116219 0.84980747 0.760625226 0.866240276 1.049594603 1.117844046 1 13.82832114 -9.536235465 18.81631693 1 0.931195975 0.00042564 0.195099374 0 0 0.184794169 0.044819169 2.91E-10 9.536235465 -0.068804025 HPWDDISYVLPEHMS(ph)M ddPTM_HeLa_A485_30min_R1 2 HPWDDISYVLPEHMSM 16 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 HPWDDISYVLPEHMS(1)M;HPWDDISYVLPEHMS(1)M ; 84.829 0.0013125 26947000 28110 41105 36313 26510 41505 34537 47502 43233 29413 38793 TRUE FALSE FALSE 34362.97252 45911.87218 49746.68981 27958.17417 37372.61647 36345.30392 37352.80964 32630.03896 35315.91931 29122.61903 1.17994101 1.576502173 1.708180496 0.960015792 1.283284873 1.248009455 1.282604755 1.120436281 1.212662888 1 14.82985248 -6.182349173 0.249061396 0.990268736 1.563724938 0.261238995 0.18984804 5.113919745 0.674592828 0.37866762 0.956581009 6.57E-07 6.182349173 0.573456202 HPWDDISYVLPEHMS(ph)M ddPTM_HeLa_A486_30min_R1 2 HPWDDISYVLPEHMSM 16 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 HPWDDISYVLPEHMS(1)M;HPWDDISYVLPEHMS(1)M ; 71.697 0.0058915 30860000 49659 57608 48126 19966.2 63180 55150 59918 61315 46024 61245 TRUE FALSE FALSE 46178.16054 53042.93228 66761.67606 46482.32264 55255.37527 48346.15372 44925.88265 47354.913 50013.39738 45908.85336 1.005866127 1.155396582 1.454222251 1.012491475 1.203588659 1.053089986 0.978588646 1.031498492 1.089406372 1 15.48648478 -6.354853421 4.772974314 1.026293994 1.173036491 0.246731007 0.118847543 0.335743898 12.79175713 0.043525265 0.038234856 4.42E-07 6.354853421 0.146742497 HQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A485_30min_R1 5 HQASDSENEELPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR ;;;; 99.059 0.00072033 3061040000 4138960 3891240 3168360 8456200 5420650 2980730 6206580 4328000 4079730 10527200 TRUE FALSE FALSE 5059657.373 4346286.669 4340468.21 8918140.794 4880951.053 3136796.414 4880493.48 3266551.214 4898494.389 7902962.779 0.640222852 0.549956616 0.549220379 1.128455371 0.61761028 0.39691398 0.617552381 0.413332481 0.619830123 1 22.91396218 -9.848168491 4.160511868 1.000006148 0.613891908 0.269974399 0.190027629 57109412.45 134195208.4 5624.30139 0.051033775 1.42E-10 9.848168491 -0.38611424 HQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A486_30min_R1 6 HQASDSENEELPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR;HQAS(1)DS(1)ENEELPKPR ;;;;; 166.06 5.66E-12 5158170000 6195150 7795360 3703234 3425149 6083830 7587420 9587670 8624400 6748010 10865120 TRUE FALSE FALSE 5760901.977 7177627.283 5137225.381 7973919.969 5320739.312 6651361.264 7188733.558 6660812.389 7332932.94 8144423.232 0.707343149 0.881293503 0.630766014 0.979065029 0.653298479 0.816676771 0.88265717 0.817837212 0.90036246 1 22.9573811 -8.07798049 0.437522806 1.012421704 0.767435999 0.325959086 0.099767055 1.565233418 0.74689887 0.134469382 0.065220149 8.36E-09 8.07798049 -0.244985705 HQAS(ph)DS(ph)ENEEPPKPR ddPTM_HeLa_A485_30min_R1 2 HQASDSENEEPPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 HQAS(1)DS(1)ENEEPPKPR;HQAS(1)DS(1)ENEEPPKPR ; 74.047 0.0058956 876620000 673210 611110 486620 1184590 880130 501084 1027070 731540 645470 1484890 TRUE FALSE FALSE 822963.242 682573.9985 666640.9879 1249301.152 792501.1669 527319.9834 807628.1041 552128.668 775009.9084 1114734.25 0.738259582 0.61231993 0.598026828 1.120716576 0.710932822 0.473045466 0.724502817 0.495300712 0.695241855 1 20.08826839 -8.06335976 21.91929071 1.000000001 0.682793822 0.236024668 0.169907117 12179.32312 4213427.679 0.170822992 0.044106307 8.64E-09 8.06335976 -0.317206179 HQAS(ph)DS(ph)ENEEPPKPR ddPTM_HeLa_A486_30min_R1 4 HQASDSENEEPPKPR 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 HQAS(1)DS(1)ENEEPPKPR;HQAS(1)DS(1)ENEEPPKPR;HQAS(1)DS(1)ENEEPPKPR;HQAS(1)DS(1)ENEEPPKPR ;;; 131.98 1.75E-05 2631880000 2171030 2793520 1431780 1123420 2413210 2672960 3326980 3059620 2486920 3416370 TRUE FALSE FALSE 2018852.008 2572151.301 1986203.56 2615378.535 2110522.7 2343197.372 2494534.415 2363011.317 2702488.228 2560888.715 0.78834039 1.004397921 0.775591516 1.021277699 0.824136827 0.914993829 0.974089346 0.922730966 1.055293114 1 21.28821313 -7.172844283 0.999046718 1.017329078 0.888411433 0.28143363 0.081203734 0.741215501 1.326174294 0.065013218 0.02751077 6.72E-08 7.172844283 -0.128917645 HQAS(ph)INELKR ddPTM_HeLa_A485_30min_R1 2 HQASINELKR 10 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 HQAS(1)INELKR;HQAS(1)INELKR ; 97.084 0.0012646 1328220000 917350 831500 666640 941650 1054920 795170 1504770 1674840 1374530 1733860 TRUE FALSE FALSE 1121411.343 928736.6919 913257.8772 993089.9551 949888.4608 836803.8716 1183263.597 1264082.864 1650385.563 1301640.611 0.861536843 0.713512381 0.701620608 0.762952497 0.729762465 0.642883961 0.909055531 0.971145839 1.267927221 1 20.31189974 -7.210951702 2.071587953 1.120372915 0.735838773 0.751568814 0.089255217 0.152185794 1.236295209 0.057344111 0.024796325 6.15E-08 7.210951702 -0.384534142 HQAS(ph)INELKR ddPTM_HeLa_A486_30min_R1 2 HQASINELKR 10 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 HQAS(1)INELKR;HQAS(1)INELKR ; 90.707 0.0018457 1099780000 952140 803550 404740 359816 666350 1021280 1189250 1463390 628230 1015200 TRUE FALSE FALSE 885399.9029 739873.7715 561466.1673 837669.8321 582770.1695 895284.8572 891687.0714 1130208.043 682685.4822 760987.3122 1.16348839 0.972255069 0.737812784 1.100767146 0.765807997 1.176478034 1.171750248 1.485186447 0.897104947 1 19.53751287 -6.304979658 21.09356262 1.178031727 0.94617951 0.208588073 0.187816947 105.4160475 51068.84145 0.063852979 0.05631457 4.95E-07 6.304979658 -0.231852217 HQDGLPYIDDS(ph)PSSSPHLSSK ddPTM_HeLa_A485_30min_R1 1 HQDGLPYIDDSPSSSPHLSSK 21 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 HQDGLPYIDDS(0.974)PS(0.017)S(0.004)S(0.005)PHLSSK 100.95 0.0002477 222090000 70095 144740 179620 29383 244510 97771 141740 150530 142220 71454 TRUE FALSE FALSE 85687.39093 161666.0839 246068.9126 30988.11889 220165.7259 102890.1384 111456.0911 113612.2815 170762.2495 53641.83281 1.597398643 3.013806118 4.587257737 0.577685684 4.104366207 1.918095132 2.077783052 2.117979113 3.183378355 1 15.71107091 HQDGLPYIDDS(ph)PSSSPHLSSK ddPTM_HeLa_A486_30min_R1 2 HQDGLPYIDDSPSSSPHLSSK 21 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 HQDGLPYIDDS(0.996)PS(0.003)S(0.001)SPHLSSK;HQDGLPYIDDS(0.984)PS(0.012)S(0.003)S(0.001)PHLSSK ; 136.16 3.72E-07 190551000 307330 442940 394350 19836.6 531970 234220 251770 267260 429410 68649 TRUE FALSE FALSE 285787.7541 407839.8212 547052.8811 46180.60729 465245.3622 205324.3178 188774.483 206410.7322 466631.6045 51458.84357 5.553715051 7.925553568 10.63088175 0.897428004 9.041115771 3.990068636 3.668455604 4.011180935 9.068054627 1 15.65113142 -5.246898292 24.87296279 4.780821942 8.025600036 0.238384558 2.850764121 1166.433228 1995215.151 0.743039077 1.279558425 5.66E-06 5.246898292 3.244778094 HQEGEIFDTEK ddPTM_HeLa_A485_30min_R1 1 HQEGEIFDTEK 11 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 113.65 0.0013381 10938000 25139 22945 22933 31793 31457 23455 35238 29582 25839 45644 FALSE FALSE TRUE 30731.08382 25628.21816 31416.87102 33529.77109 28325.03063 24683.06753 27709.11343 22326.96812 31024.65029 34265.79082 0.896844436 0.747924316 0.916858192 0.978520276 0.826627081 0.720341394 0.808652384 0.651581872 0.905411769 1 15.06448136 -5.992008884 24.97500511 0.792509159 0.880648227 0.063797212 0.104831671 382.1843229 1194448.118 0.031628561 0.035802218 1.02E-06 5.992008884 0.088139068 HQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITAR ddPTM_HeLa_A485_30min_R1 1 HQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITAR 38 1 Q9NR28-3;Q9NR28;Q9NR28-2 Q9NR28-3 DIABLO "Diablo homolog, mitochondrial" 0 0 7.6792 0.035551 48267000 35695 28677 20665 47279 36260 56522 66179 74900 31689 71919 FALSE FALSE TRUE 43635.2296 32030.52569 28309.84344 49861.73205 32649.82708 59481.40452 52039.31602 56530.65756 38048.69163 53990.91687 0.808195751 0.593257673 0.524344558 0.92352075 0.604728146 1.101692803 0.963853163 1.047040147 0.704723939 1 15.7204291 -6.254986266 24.99663689 0.966426468 0.689070197 0.472995761 0.143876237 463.6837294 1796116.174 0.047388042 0.046298756 5.56E-07 6.254986266 -0.277356272 HQGVMVGMGQK ddPTM_HeLa_A485_30min_R1 22 HQGVMVGMGQK 11 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;Q562R1;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTBL2;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;;;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;;;;; 150.15 7.48E-05 15376924000 11800639 13017786 9957723 13039683 16605334 13754489 19634866 20648301 11851283 18216891 FALSE FALSE TRUE 14425650.43 14540102.83 13641499.11 13752007.86 14952048.64 14474652.78 15439716.48 15584272.8 14229726.79 13675755.33 1.054833908 1.063202908 0.997495113 1.005575746 1.093325252 1.058417062 1.12898455 1.139554813 1.040507559 1 23.70511718 -5.772400815 24.99870716 1.085466214 1.030287216 0.205750062 0.042790843 288.7043007 658418.1925 0.013322237 0.015251635 1.69E-06 5.772400815 -0.055178998 HQGVMVGMGQK ddPTM_HeLa_A486_30min_R1 20 HQGVMVGMGQK 11 0 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;Q562R1;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;ACTBL2;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;;; 159.83 3.85E-06 7404590000 14710034 13830579 8952337 6076410 19824388 14441780 17707874 17033536 12255816 17782112 FALSE FALSE TRUE 13678936.58 12734593.55 12418921.64 14146189.56 17337828.4 12660100.02 13277176.63 13155371.69 13318160 13329355.41 1.026226412 0.955379548 0.931697089 1.061280844 1.300725194 0.949790866 0.996085423 0.986947327 0.999160093 1 23.66810368 -5.272632688 23.95429351 1.046479922 0.969528869 0.104132481 0.09462444 955.1887337 2044154.777 0.028549078 0.042837838 5.34E-06 5.272632688 -0.076951053 HQHMHDRDDLYAEQMER ddPTM_HeLa_A485_30min_R1 3 HQHMHDRDDLYAEQMER 17 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ;; ;; 103.61 0.0002341 1873750000 603290 730590 558910 441914 423440 248613 284266 583130 436760 604050 FALSE FALSE TRUE 737489.7792 816026.1452 765674.0672 466054.6428 381280.8268 261629.9923 223530.2469 440116.4532 524413.7258 453471.4517 1.626320194 1.799509412 1.688472481 1.027748585 0.840804477 0.576949202 0.492931244 0.970549417 1.156442647 1 18.7906522 -5.343927643 2.839183971 0.811494867 1.732101706 0.808470792 0.18843239 0.117553615 1.845450177 0.061393345 0.101528355 4.53E-06 5.343927643 0.920606839 HQHMHDRDDLYAEQMER ddPTM_HeLa_A486_30min_R1 3 HQHMHDRDDLYAEQMER 17 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ;; ;; 98.508 0.00045386 567345000 849130 86319 187894 195133 562667 189981 94341 147066 80997 306014 FALSE FALSE TRUE 789610.3719 79478.76807 260651.5888 454279.4855 492092.0582 166543.0758 70735.88396 113582.2822 88017.88518 229386.1026 3.44227642 0.34648467 1.136300699 1.980414159 2.145256633 0.726038212 0.308370399 0.495157644 0.383710627 1 17.80741846 -6.387221407 5.399457078 0.507921602 1.696997121 0.391385353 0.759805569 0.261137645 10.42186747 0.270172299 0.236637064 4.10E-07 6.387221407 1.189075519 HQLGPSLRS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 HQLGPSLRSPPR 12 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 HQLGPS(0.128)LRS(0.872)PPR 55.885 0.0074306 0 97110 162060 147960 86121 204470 118880 166650 195370 135750 139760 TRUE FALSE FALSE 118711.7845 181011.5073 202696.5611 90825.57216 184112.2489 125104.373 131043.8661 147455.2012 162993.7798 104920.4041 1.131446123 1.725226936 1.931907934 0.865661669 1.754780211 1.192374105 1.24898362 1.405400622 1.553499353 1 16.67893574 -5.244512708 24.97072654 1.319318181 1.609096918 0.171296875 0.304393144 1507.670684 2224157.492 0.079766323 0.137699078 5.69E-06 5.244512708 0.289778737 HQLGPSLRS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 HQLGPSLRSPPR 12 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 HQLGPS(0.007)LRS(0.993)PPR 88.706 0.0011273 134780000 161980 152770 122470 26004 180470 139020 146650 155470 142720 126370 TRUE FALSE FALSE 150626.0385 140663.9488 169893.6639 60538.62617 157833.7698 121869.1259 109956.6189 120072.8749 155091.0845 94726.12947 1.590121325 1.484954042 1.793524815 0.639091099 1.666211537 1.286541808 1.160784458 1.267579237 1.637257696 1 16.53147482 HQLVHT(ph)GEKPFQCTFEGCGK ddPTM_HeLa_A485_30min_R1 1 HQLVHTGEKPFQCTFEGCGK 20 1 P25490;O15391 P25490 YY1;YY2 Transcriptional repressor protein YY1;Transcription factor YY2 1 0 HQLVHT(1)GEKPFQCTFEGCGK 210.56 1.11E-26 299120000 470490 314550 225120 658240 557240 349290 596070 505520 344080 856920 TRUE FALSE FALSE 575148.8773 351333.8863 308401.256 694197.9844 501759.229 367578.2843 468714.7751 381540.4274 413133.6999 643305.6144 0.89405232 0.54613838 0.479400846 1.079110719 0.779970231 0.571389828 0.728603582 0.593093576 0.642204406 1 19.29514475 HQNS(ph)LPELEAAEAGAPGSGPVDLFR ddPTM_HeLa_A485_30min_R1 1 HQNSLPELEAAEAGAPGSGPVDLFR 25 0 Q96BZ8 Q96BZ8 LENG1 Leukocyte receptor cluster member 1 1 0 HQNS(1)LPELEAAEAGAPGSGPVDLFR 102.69 0.00061943 61878000 23959 25013 25779 25538 40313 24358 44519 51151 47285 45870 TRUE FALSE FALSE 29288.59689 27938.05277 35315.72485 26933.07627 36299.29617 25633.34722 35007.15196 38606.13705 56774.66578 34435.45317 0.850536125 0.811316541 1.025562947 0.782132186 1.0541257 0.744388264 1.016602041 1.121115986 1.648727127 1 15.07160704 -7.337850576 2.737295713 1.330187363 0.889201413 0.477424985 0.178515501 0.214353717 3.082689421 0.110125667 0.045535504 4.59E-08 7.337850576 -0.44098595 HQNS(ph)LPELEAAEAGAPGSGPVDLFR ddPTM_HeLa_A486_30min_R1 2 HQNSLPELEAAEAGAPGSGPVDLFR 25 0 Q96BZ8 Q96BZ8 LENG1 Leukocyte receptor cluster member 1 1 0 HQNS(1)LPELEAAEAGAPGSGPVDLFR;HQNS(1)LPELEAAEAGAPGSGPVDLFR ; 148.72 2.68E-09 112030000 63387 79878 54522 28869 80598 103963 122687 146243 74377 118778 TRUE FALSE FALSE 58943.89863 73548.17637 75634.37855 67208.49096 70488.64729 91137.10208 91989.41495 112946.6614 80824.05825 89035.21568 0.662029043 0.826057148 0.849488351 0.754852902 0.791694014 1.02360736 1.033180121 1.268561664 0.907776295 1 16.44208845 -6.311583336 3.176509452 1.070885187 0.77938385 0.659083323 0.096823236 0.15276496 3.098437292 0.035035879 0.03147368 4.88E-07 6.311583336 -0.291501336 HQNVQLPR ddPTM_HeLa_A485_30min_R1 1 HQNVQLPR 8 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A087WUW5;K7EK45;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 81.296 0.020364 8799600 2959.3 5383.8 5390.9 2423.3 6907.9 3953.3 4166.2 7528.3 4743.3 5791.8 FALSE FALSE TRUE 3617.586076 6013.388577 7385.218244 2555.678743 6220.125221 4160.288675 3276.057335 5681.972621 5695.236802 4348.01085 0.832009441 1.383020601 1.698528016 0.587781133 1.430568008 0.956825734 0.753461168 1.30679817 1.309848802 1 12.08613983 -5.248710624 24.99152757 1.061812567 1.31236939 0.121783781 0.312570923 1762.878116 3461214.212 0.084597224 0.145246614 5.64E-06 5.248710624 0.250556824 HQPASASSTAASPAHPAK(ac)LR ddPTM_HeLa_A485_30min_R1 1 HQPASASSTAASPAHPAKLR 20 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 Q96L91-3 EP400 E1A-binding protein p400 0 1 HQPASASSTAASPAHPAK(1)LR 131.09 8.79E-08 7127700 2705.8 4232.8 4313.2 1795.8 4513.3 3462.3 4127.1 5138.9 4985.3 3467.5 FALSE TRUE FALSE 3307.695875 4727.78914 5908.832167 1893.900007 4063.940005 3643.580674 3245.31137 3878.576718 5985.803982 2603.116065 1.270667843 1.816203743 2.269907304 0.727551119 1.561182792 1.399699661 1.246702525 1.489974562 2.29947641 1 11.34602392 -5.240612129 24.99788385 1.411304925 1.7886539 0.141421501 0.445207176 1757.40725 2109323.712 0.120229454 0.207944993 5.75E-06 5.240612129 0.377348976 HQPASASSTAASPAHPAK(ac)LR ddPTM_HeLa_A486_30min_R1 2 HQPASASSTAASPAHPAKLR 20 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 Q96L91-3 EP400 E1A-binding protein p400 0 1 ; HQPASASSTAASPAHPAK(1)LR;HQPASASSTAASPAHPAK(1)LR 157.14 4.13E-15 15324500 10157.6 10972.3 11474.5 1381.49 14095.3 7413.3 9669.7 9358.4 10202.6 6421.3 FALSE TRUE FALSE 9445.604694 10102.81499 15917.7337 3216.178537 12327.33604 6498.722419 7250.238784 7227.696612 11086.96958 4813.364684 1.962370465 2.09890911 3.306986846 0.668176784 2.561064214 1.350141293 1.506272485 1.501589239 2.30337203 1 12.23283002 -5.25916251 24.99868023 1.607954827 2.420370763 0.30468366 0.619041679 268.9742594 2953160.102 0.163168447 0.26614503 5.51E-06 5.25916251 0.812415936 HQPST(ph)PDPFLKPR ddPTM_HeLa_A485_30min_R1 4 HQPSTPDPFLKPR 13 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 HQPS(0.001)T(0.999)PDPFLKPR;HQPS(0.001)T(0.999)PDPFLKPR;HQPS(0.118)T(0.882)PDPFLKPR;HQPS(0.15)T(0.85)PDPFLKPR ;;; 136.01 1.16E-05 1772450000 1122010 1300340 985710 1134330 1447590 1300140 1603460 1625550 958750 1285220 TRUE FALSE FALSE 1371597.254 1452403.452 1350365.148 1196295.576 1303462.857 1368213.32 1260867.672 1226881.314 1151162.331 964838.3067 1.421582501 1.505333527 1.399576632 1.239892288 1.350965076 1.418075247 1.306817591 1.271592665 1.193114248 1 19.87992766 -12.96123934 0.093362117 1.93E-13 1.656452675 0.805015781 0.060568557 72.26489358 0.57816894 15.22074605 1.502810827 1.09E-13 12.96123934 1.656452675 HQPST(ph)PDPFLKPR ddPTM_HeLa_A486_30min_R1 4 HQPSTPDPFLKPR 13 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 HQPS(0.005)T(0.995)PDPFLKPR;HQPS(0.009)T(0.991)PDPFLKPR;HQPS(0.035)T(0.965)PDPFLKPR;HQPS(0.02)T(0.98)PDPFLKPR ;;; 130.29 2.36E-05 1753180000 1087960 986880 582711 304580 1001330 882760 999530 1015080 779880 1003200 TRUE FALSE FALSE 1011699.622 908676.0346 808352.3047 709077.6326 875733.8544 773854.0464 749437.022 783968.443 847480.6263 751992.1903 1.345359214 1.20835834 1.074947739 0.942932176 1.164551794 1.029071919 0.996602135 1.042522054 1.126980622 1 19.52035815 -4.553301321 2.248518727 1.044951234 1.349619299 0.720065825 0.060485085 0.190184157 1.653515505 0.016269018 0.089994065 2.80E-05 4.553301321 0.304668065 HQPTAIIAK ddPTM_HeLa_A485_30min_R1 2 HQPTAIIAK 9 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 ; ; 143.89 0.00012006 89739000 300120 364020 290780 356120 451940 372770 548030 553570 334000 507940 FALSE FALSE TRUE 366880.6586 406588.9724 398351.6224 375573.9339 406943.2667 392287.6608 430938.9135 417806.0895 401030.7364 381319.9059 0.962133508 1.066267368 1.044665165 0.984931361 1.067196494 1.028762608 1.130124357 1.095683921 1.051691061 1 18.54064232 -6.184400358 1.952337613 1.074428959 1.021816457 0.169638366 0.04420626 0.529955798 3.97857452 0.017083328 0.016522967 6.54E-07 6.184400358 -0.052612502 HQPTAIIAK ddPTM_HeLa_A486_30min_R1 1 HQPTAIIAK 9 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 112.75 0.0028149 240890000 409980 365470 231500 126570 694620 367080 421900 426850 328820 473200 FALSE FALSE TRUE 381242.5191 336508.8262 321142.9998 294661.3565 607494.2825 321793.4018 316336.1576 329665.5731 357322.3824 354707.64 1.074807746 0.948693482 0.905373788 0.830716126 1.712661962 0.907207417 0.891822227 0.929400825 1.007371542 1 18.43627088 HQPWQS(ph)PERPLS(ph)RLSPER ddPTM_HeLa_A485_30min_R1 1 HQPWQSPERPLSRLSPER 18 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 2 0 HQPWQS(1)PERPLS(0.87)RLS(0.13)PER 93.633 0.00039511 195580000 36157 45901 44006 36932 62225 42750 59615 69315 47373 52260 TRUE FALSE FALSE 44199.99991 51268.72266 60285.65064 38949.50164 56029.66051 44988.3239 46877.76824 52315.38757 56880.32657 39232.54377 1.126615704 1.306790683 1.536623549 0.992785527 1.428142433 1.146709328 1.194869456 1.33346917 1.449825097 1 15.25976326 -5.247382219 24.82423346 1.239191373 1.321687981 0.06126335 0.173745659 2722.711695 4808162.895 0.046038449 0.079207433 5.66E-06 5.247382219 0.082496607 HQPWQS(ph)PERPLS(ph)RLSPER ddPTM_HeLa_A486_30min_R1 1 HQPWQSPERPLSRLSPER 18 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 2 0 HQPWQS(1)PERPLS(0.719)RLS(0.281)PER 109.41 7.37E-05 188060000 58963 60124 58797 25616 89015 62068 76624 84226 54855 68699 TRUE FALSE FALSE 54829.99819 55359.55527 81564.77304 59635.34256 77849.90867 54410.68122 57451.86475 65049.57844 59609.87557 51496.32324 1.064736174 1.07501957 1.58389508 1.158050494 1.511756641 1.056593516 1.115649839 1.263188794 1.157555954 1 15.65218181 HQPWQS(ph)PERPLSR ddPTM_HeLa_A485_30min_R1 6 HQPWQSPERPLSR 13 1 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(0.998)PERPLS(0.002)R;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR ;;;;; 165.58 3.41E-12 17329900000 1173740 1154570 1290390 1377418 1557260 982674 1223250 997108 1134090 1537310 TRUE FALSE FALSE 1434834.414 1289586.918 1767758.959 1452662.858 1402213.727 1034125.291 961892.6445 752565.6996 1361691.461 1154086.909 1.243263746 1.117408843 1.53173816 1.258711841 1.214998381 0.896054953 0.833466385 0.652087545 1.17988641 1 20.13832044 -6.203216654 3.286308778 0.881750409 1.28854501 0.565612024 0.15800867 0.178712033 3.85805713 0.055725584 0.054086113 6.26E-07 6.203216654 0.406794601 HQPWQS(ph)PERPLSR ddPTM_HeLa_A486_30min_R1 6 HQPWQSPERPLSR 13 1 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR;HQPWQS(1)PERPLSR ;;;;; 180.39 2.24E-17 17813820000 1392130 1699190 1379930 488772 1520730 1501870 1684030 1528280 1434630 1566810 TRUE FALSE FALSE 1294548.876 1564539.996 1914275.852 1137885.917 1329985.863 1316584.549 1262667.882 1180324.006 1558984.884 1174470.578 1.102240363 1.332123619 1.629905328 0.968850083 1.132413096 1.121002581 1.075095372 1.004983887 1.327393732 1 20.16357914 -5.285050019 24.99919782 1.092612968 1.352493244 0.390839938 0.15145664 777.6064503 823336.2694 0.042277517 0.062749588 5.19E-06 5.285050019 0.259880276 HQPWQS(ph)PERPLSRLS(ph)PER ddPTM_HeLa_A485_30min_R1 2 HQPWQSPERPLSRLSPER 18 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 2 0 HQPWQS(1)PERPLS(0.276)RLS(0.724)PER;HQPWQS(1)PERPLS(0.414)RLS(0.586)PER ; 69.152 0.0045501 519340000 84527 115044 112596 111840 152195 115860 136277 155705 113231 146410 TRUE FALSE FALSE 103329.7395 128497.3951 154249.9459 117949.536 137041.9314 121926.2504 107160.3057 117518.1046 135955.4231 109912.6815 0.94010753 1.169086163 1.40338625 1.073120357 1.246825476 1.109301027 0.974958524 1.069195138 1.236940281 1 16.74599833 -6.513084791 24.12252056 1.07119547 1.17496484 0.110229519 0.128339703 666.6876975 1642063.87 0.047810693 0.039323732 3.07E-07 6.513084791 0.10376937 HQPWQS(ph)PERPLSRLS(ph)PER ddPTM_HeLa_A486_30min_R1 1 HQPWQSPERPLSRLSPER 18 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 2 0 HQPWQS(1)PERPLS(0.36)RLS(0.64)PER 72.899 0.0036686 244960000 60156 54954 46067 18924 72823 53547 72969 68026 46121 60926 TRUE FALSE FALSE 55939.37505 50599.2449 63905.37612 44056.02837 63688.86029 46940.91557 54711.38441 52537.9648 50118.80541 45669.73304 1.224867573 1.107938268 1.39929384 0.964665774 1.394552936 1.027834245 1.197979072 1.150389137 1.097418401 1 15.47895074 -8.336605405 0.365206332 0.977164679 1.21355626 0.180904912 0.129817514 3.721953013 1.111297338 0.280930346 0.111431608 4.61E-09 8.336605405 0.236391582 HQPWQSPERPLSRLS(ph)PER ddPTM_HeLa_A485_30min_R1 2 HQPWQSPERPLSRLSPER 18 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 HQPWQSPERPLS(0.002)RLS(0.998)PER;HQPWQSPERPLSRLS(1)PER ; 224.57 6.88E-35 716650000 102486 174037 166705 99715 308510 199150 292080 337170 179102 196324 TRUE FALSE FALSE 125283.6571 194389.1132 228376.1167 105162.178 277793.6612 209577.1861 229674.7219 254478.5288 215046.1286 147384.0399 0.85004901 1.318929196 1.549530851 0.71352487 1.884828652 1.421980197 1.558341881 1.726635591 1.459086946 1 17.16922078 -5.770518039 24.99997339 1.542978799 1.154611522 0.282450992 0.306204129 253.146701 697089.9799 0.090748199 0.104340604 1.70E-06 5.770518039 -0.388367277 HQPWQSPERPLSRLS(ph)PER ddPTM_HeLa_A486_30min_R1 1 HQPWQSPERPLSRLSPER 18 2 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7;J3QRS2;V9GYU5;J3QL08 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 HQPWQSPERPLS(0.013)RLS(0.987)PER 153.65 9.45E-09 287220000 102000 82307 85303 18978 152300 93667 151010 155660 82875 101250 TRUE FALSE FALSE 94850.32673 75784.69356 118334.6061 44181.7431 133197.1139 82111.31788 113225.7008 120219.616 90058.67173 75896.34097 1.249735172 0.998528949 1.559160884 0.582132716 1.754987291 1.081887701 1.491846634 1.583997522 1.186600969 1 16.21174271 -5.78761363 24.9999984 1.372784319 1.123310546 0.130860275 0.312652009 447.7090581 427621.0923 0.090900947 0.103103065 1.63E-06 5.78761363 -0.249473773 HQQIPLHS(ph)PPSK ddPTM_HeLa_A485_30min_R1 1 HQQIPLHSPPSK 12 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;C9JAU4 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HQQIPLHS(0.985)PPS(0.015)K 57.288 0.014484 0 83728 105310 91667 108830 132500 99820 145850 170860 105990 158480 TRUE FALSE FALSE 102353.0047 117625.0884 125578.4379 114775.1073 119307.8348 105046.4208 114687.956 128956.3171 127261.2208 118973.8526 0.860298313 0.988663356 1.055512914 0.964708672 1.00280719 0.882937037 0.963976147 1.083904692 1.069657055 1 16.86028502 -7.250852887 24.02086432 1.057585654 0.963513072 0.351384436 0.056517681 452.6661784 1027107.924 0.027680244 0.015743413 5.61E-08 7.250852887 -0.094072582 HQQIPLHS(ph)PPSK ddPTM_HeLa_A486_30min_R1 2 HQQIPLHSPPSK 12 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;C9JAU4 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 HQQIPLHS(0.999)PPS(0.001)K;HQQIPLHS(1)PPSK ; 148.57 1.02E-07 519550000 237350 207297 133513 80090 209239 218530 251950 254790 169140 261490 TRUE FALSE FALSE 220712.9907 190870.0308 185212.8092 186453.5675 182994.2935 191569.9905 188909.4451 196779.879 183801.1914 196011.202 1.126022332 0.973771034 0.944909308 0.951239346 0.933590997 0.977342052 0.963768617 1.003921598 0.937707588 1 17.58057658 -4.263318127 4.698578499 0.962874876 1.135434112 0.817222451 0.022859593 0.070099603 4.298323316 0.005627595 0.03975661 5.45E-05 4.263318127 0.172559236 HQQQLLAS(ph)PGSSTVDNK ddPTM_HeLa_A485_30min_R1 3 HQQQLLASPGSSTVDNK 17 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 0 HQQQLLAS(0.99)PGS(0.009)S(0.001)TVDNK;HQQQLLAS(1)PGSSTVDNK;HQQQLLAS(1)PGSSTVDNK ;; 202.5 1.68E-24 911640000 513335 464983 400968 748623 678481 444087 736030 715671 446392 967390 TRUE FALSE FALSE 627524.5998 519358.717 549302.7489 789518.3789 610929.0493 467338.7086 578771.1777 540151.5651 535978.7798 726237.4765 0.864076311 0.715136211 0.756367947 1.087135275 0.841224901 0.643506737 0.796944796 0.743767132 0.738021373 1 19.47008185 -6.031115565 24.43103355 0.766231307 0.85425074 0.061523721 0.124586726 1264.400271 992767.5472 0.041535155 0.041585828 9.31E-07 6.031115565 0.088019433 HQQQLLAS(ph)PGSSTVDNK ddPTM_HeLa_A486_30min_R1 1 HQQQLLASPGSSTVDNK 17 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 0 HQQQLLAS(1)PGSSTVDNK 171.5 2.45E-12 353460000 356970 318830 203620 114170 299860 356900 434510 423750 250650 470390 TRUE FALSE FALSE 331948.2464 293564.7496 282467.1171 265793.5298 262248.7627 312869.3067 325791.0022 327271.3754 272376.5438 352601.2823 0.941426657 0.832568582 0.80109498 0.75380761 0.743754421 0.887317552 0.923964315 0.928162749 0.772477463 1 18.4276782 -6.434414475 8.523052131 0.900942121 0.8115281 0.26841785 0.072759363 0.498335388 44.14849234 0.026227407 0.023085716 3.68E-07 6.434414475 -0.08941402 HQRT(ph)HLR ddPTM_HeLa_A485_30min_R1 1 HQRTHLR 7 1 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 HQRT(1)HLR 66.682 0.029243 41320000 56494 62143 54924 38584 42646 65821 30706 48987 57755 41439 TRUE FALSE FALSE 69060.8954 69410.08328 75242.67318 40691.74622 38400.0145 69267.28578 24145.41226 36972.86144 69345.89874 31109.01993 2.219963713 2.231188364 2.41867707 1.308036907 1.23436915 2.226598136 0.776154707 1.18849329 2.229125151 1 14.92504532 -5.261964033 24.99660367 1.429747789 2.284067612 0.438172851 0.449672899 44.35621716 2113350.552 0.123216659 0.196011707 5.47E-06 5.261964033 0.854319822 HQS(ph)DGNEIAHTR ddPTM_HeLa_A485_30min_R1 2 HQSDGNEIAHTR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HQS(1)DGNEIAHTR;HQS(1)DGNEIAHTR ; 194.37 9.34E-14 1714640000 627390 973730 964530 651460 1228510 800110 1034650 1093440 950760 1052420 TRUE FALSE FALSE 766950.741 1087599.253 1321349.784 687047.6102 1106195.231 842002.5224 813588.5752 825272.1256 1141568.811 790071.0624 0.970736403 1.376584088 1.672444224 0.869602296 1.400121183 1.065730113 1.029766326 1.0445543 1.44489384 1 19.5916229 -5.273072449 24.97888124 1.129340692 1.34358785 0.158589242 0.229454256 1346.417716 2891066.035 0.063674773 0.095330546 5.33E-06 5.273072449 0.214247158 HQS(ph)DGNEIAHTR ddPTM_HeLa_A486_30min_R1 2 HQSDGNEIAHTR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HQS(1)DGNEIAHTR;HQS(1)DGNEIAHTR ; 174.46 5.23E-11 1962170000 1663000 1978920 1867610 640550 2607210 1844490 2066870 2139450 1703580 1872260 TRUE FALSE FALSE 1546432.288 1822103.172 2590798.608 1491232.772 2280189.411 1616935.577 1549717.265 1652343.939 1851247.686 1403433.91 1.101891779 1.298317762 1.846042475 1.062560026 1.624721617 1.152128053 1.10423245 1.177357856 1.319084335 1 20.4205297 -6.355933362 24.99999928 1.158748079 1.389318128 0.212282164 0.22714505 89.99541171 23803.2564 0.07829565 0.069050264 4.41E-07 6.355933362 0.230570049 HQS(ph)FGAAVLSR ddPTM_HeLa_A485_30min_R1 5 HQSFGAAVLSR 11 0 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 HQS(1)FGAAVLSR;HQS(1)FGAAVLSR;HQS(1)FGAAVLSR;HQS(1)FGAAVLSR;HQS(1)FGAAVLSR ;;;; 178.51 1.65E-10 3417362000 891011 1057377 1041249 855650 1343324 1102529 1512020 1687750 1042799 1299724 TRUE FALSE FALSE 1089213.323 1181028.042 1426450.335 902391.9929 1209577.946 1160255.714 1188964.575 1273826.666 1252079.194 975726.7264 1.116309817 1.210408622 1.461936315 0.924840909 1.239668765 1.189119537 1.218542593 1.305515809 1.283227322 1 19.89611762 -6.862410953 5.439127767 1.228341149 1.193891176 0 0.146212694 1.58780826 71.35337538 0.061324732 0.0410848 1.37E-07 6.862410953 -0.034449974 HQS(ph)FGAAVLSR ddPTM_HeLa_A486_30min_R1 4 HQSFGAAVLSR 11 0 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 HQS(1)FGAAVLSR;HQS(1)FGAAVLSR;HQS(1)FGAAVLSR;HQS(1)FGAAVLSR ;;; 164.93 4.21E-08 1639770000 708185 720708 581770 276532 797450 735864 960940 987080 611361 831516 TRUE FALSE FALSE 658544.8886 663596.4733 807046.9243 643780.4712 697426.3851 645080.5814 720502.6482 762343.4318 664354.2637 623298.9813 1.056547353 1.064651946 1.294799043 1.032859816 1.118927523 1.034945669 1.155950306 1.223078257 1.065867719 1 19.24956483 HQTLEVSLS(ph)RDSPLK ddPTM_HeLa_A485_30min_R1 1 HQTLEVSLSRDSPLK 15 1 Q8NCF5;Q8NCF5-2;H3BSZ7;Q8NCF5-3 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 HQTLEVSLS(0.587)RDS(0.412)PLK 188.6 3.01E-18 364780000 304000 245590 224270 272810 475780 273150 450940 395690 261160 523630 TRUE FALSE FALSE 371623.7512 274309.6142 307236.8057 287712.9195 428409.6726 287451.7116 354592.9852 298646.4071 313572.4165 393098.6777 0.945370138 0.697813627 0.781576798 0.731910169 1.089827305 0.731245684 0.902045734 0.759723764 0.797693898 1 18.58453199 -11.26047898 2.107207124 1.624040298 0.82369895 0.171130391 0.114511864 9683936.21 1358854.021 28814698.79 0.029169759 5.49E-12 11.26047898 -0.800341348 HQTLEVSLSRDS(ph)PLK ddPTM_HeLa_A485_30min_R1 3 HQTLEVSLSRDSPLK 15 1 Q8NCF5;Q8NCF5-2;H3BSZ7;Q8NCF5-3 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 HQTLEVS(0.003)LS(0.004)RDS(0.994)PLK;HQTLEVSLSRDS(1)PLK;HQTLEVSLSRDS(1)PLK ;; 156.15 1.02E-08 522000000 500760 441918 420126 562740 845740 465920 873380 732420 484760 1050630 TRUE FALSE FALSE 612152.3344 493596.4659 575548.0903 593481.0613 761535.156 490314.8508 686775.2281 552792.8466 582046.8855 788727.2764 0.776126746 0.625813866 0.729717492 0.752454085 0.965524052 0.62165322 0.870738529 0.700866907 0.73795709 1 19.58916701 -11.61855359 2.015442451 5.355414611 0.753215401 0.361901022 0.098222838 3034742.902 111926.9679 60740541.07 0.024909276 2.41E-12 11.61855359 -4.60219921 HQTLEVSLSRDS(ph)PLK ddPTM_HeLa_A486_30min_R1 4 HQTLEVSLSRDSPLK 15 1 Q8NCF5;Q8NCF5-2;H3BSZ7;Q8NCF5-3 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 HQTLEVSLS(0.001)RDS(0.999)PLK;HQTLEVSLS(0.002)RDS(0.998)PLK;HQTLEVSLSRDS(1)PLK;HQTLEVSLS(0.006)RDS(0.994)PLK ;;; 219.87 9.14E-34 743210000 1016460 1326740 839950 141994 1448180 1454980 1893610 1672100 1360390 1126360 TRUE FALSE FALSE 945211.403 1221604.29 1165201.135 330569.208 1266535.761 1275479.361 1419808.749 1291399.332 1478309.701 844312.1246 1.119504713 1.446863375 1.380059697 0.391524886 1.500080034 1.510672799 1.681615966 1.529528351 1.750904266 1 19.68741691 -5.958290799 24.99999095 1.535561354 1.108273995 0.271794279 0.325200242 191.5044515 114784.6338 0.100696716 0.114179254 1.10E-06 5.958290799 -0.42728736 HRAEAPPLEREDS(ph)GTFSLGK ddPTM_HeLa_A485_30min_R1 3 HRAEAPPLEREDSGTFSLGK 20 2 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 HRAEAPPLEREDS(0.703)GT(0.297)FSLGK;HRAEAPPLEREDS(0.933)GT(0.067)FSLGK;HRAEAPPLEREDS(0.982)GT(0.018)FSLGK ;; 239.51 1.73E-46 1170310000 353749 522770 538300 568230 1584530 853490 1630580 2644650 781600 1045560 TRUE FALSE FALSE 432439.2446 583903.404 737439.5705 599270.9661 1426768.63 898177.4167 1282193.262 1996045.441 938459.9507 784921.1341 0.550933369 0.743900729 0.939507854 0.763479208 1.817722275 1.144290015 1.633531328 2.54298853 1.195610501 1 19.58218818 -5.753015698 24.9260133 1.616161895 0.762633482 0.466873288 0.418995378 154.562271 457353.488 0.124531652 0.158100572 1.77E-06 5.753015698 -0.853528413 HRAEAPPLEREDS(ph)GTFSLGK ddPTM_HeLa_A486_30min_R1 1 HRAEAPPLEREDSGTFSLGK 20 2 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 HRAEAPPLEREDS(0.962)GT(0.038)FSLGK 183.15 2.62E-19 158390000 135010 76606 95964 83900 247440 146070 228110 295410 81220 164560 TRUE FALSE FALSE 125546.4962 70535.46157 133123.8308 195323.4401 216403.7679 128049.3685 171034.4653 228151.5918 88260.215 123353.1049 1.017781403 0.57181748 1.079209404 1.583449725 1.754343906 1.03807171 1.386543658 1.849581265 0.715508662 1 16.9124345 -5.004351902 5.92853546 1.373516861 0.797394603 0.274106663 0.34654721 0.168236204 23.88996534 0.089642829 0.175267473 9.90E-06 5.004351902 -0.576122258 HRDLLHNEDR ddPTM_HeLa_A485_30min_R1 3 HRDLLHNEDR 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 ;; ;; 110.66 0.002451 364500000 131916 209915 182666 112703 181297 148455 157213 193073 153838 150377 FALSE FALSE TRUE 161260.2591 234462.7332 250241.7548 118859.6795 163246.4341 156227.8742 123623.1582 145721.544 184711.8755 112890.7814 1.4284626 2.076898843 2.216671297 1.052873211 1.446056375 1.383885135 1.095068674 1.290818809 1.636199814 1 16.78456816 -5.264535377 24.99550751 1.28877229 1.924299711 0.551910583 0.261854155 196.8203738 1589030.917 0.072235328 0.112522718 5.44E-06 5.264535377 0.635527421 HRDLLHNEDR ddPTM_HeLa_A486_30min_R1 2 HRDLLHNEDR 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 ; ; 144.1 1.97E-05 49292000 69291 52530 45259 18707.8 60657 48900 47330 50863 37662 65774 FALSE FALSE TRUE 64434.05872 48367.33149 62784.49688 43552.70384 53048.83346 42867.21518 35487.53339 39282.60523 40926.57248 49303.76228 1.306879145 0.98100691 1.273422026 0.883354572 1.075959136 0.869451198 0.719773335 0.796746605 0.830090253 1 15.58941012 -5.681397267 0.931856988 0.819721711 1.187287802 0.53667734 0.126885546 0.441869212 0.815331206 0.057457695 0.101534511 2.08E-06 5.681397267 0.36756609 HRDTHPGS(ph)PGSPGPALRPLPAR ddPTM_HeLa_A485_30min_R1 2 HRDTHPGSPGSPGPALRPLPAR 22 2 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 0 HRDTHPGS(0.981)PGS(0.019)PGPALRPLPAR;HRDTHPGS(0.874)PGS(0.126)PGPALRPLPAR ; 121.58 6.83E-06 873940000 177540 332464 266880 156121 312269 265287 334093 397210 242218 256875 TRUE FALSE FALSE 217033.1605 371342.7727 365610.0178 164649.4949 281178.4019 279177.0171 262711.3013 299793.6247 290828.9308 192840.7899 1.125452559 1.925644325 1.895916408 0.853810519 1.458085719 1.447707289 1.362322263 1.554617282 1.508129742 1 17.55705072 -10.9336579 2.52995123 0.682419856 1.467445947 0.172350158 0.301300986 16358264.58 7721622.91 30632613.62 0.077610487 1.17E-11 10.9336579 0.78502609 HRDTHPGS(ph)PGSPGPALRPLPAR ddPTM_HeLa_A486_30min_R1 1 HRDTHPGSPGSPGPALRPLPAR 22 2 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 0 HRDTHPGS(0.953)PGS(0.047)PGPALRPLPAR 141.48 9.24E-10 406270000 172000 141220 154690 30623 198670 125100 182100 184700 137950 153490 TRUE FALSE FALSE 159943.6882 130029.2129 214590.1107 71291.8916 173750.9561 109666.4339 136536.6539 142647.842 149907.6171 115055.1049 1.390148558 1.130147271 1.865107253 0.619632581 1.510154253 0.953164433 1.186706613 1.239821927 1.302920172 1 16.81196547 -5.251272509 24.99984292 1.138626953 1.428635573 0.238025695 0.279576472 1171.624473 2880962.437 0.071731519 0.122470993 5.61E-06 5.251272509 0.29000862 HRDTHPGSPGS(ph)PGPALRPLPAR ddPTM_HeLa_A486_30min_R1 1 HRDTHPGSPGSPGPALRPLPAR 22 2 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 0 HRDTHPGS(0.478)PGS(0.521)PGPALRPLPAR 69.845 0.0027712 205710000 35985 32800 31578 103790 39118 41496 43049 42418 27229 77361 TRUE FALSE FALSE 33462.63733 30200.80854 43805.84729 241628.3653 34211.45568 36376.64542 32277.68487 32760.34738 29589.23164 57989.30206 0.577048458 0.520799656 0.755412563 4.166774847 0.589961501 0.627299245 0.556614474 0.564937777 0.510253281 1 15.82349915 HRDYETATLSDIK ddPTM_HeLa_A485_30min_R1 1 HRDYETATLSDIK 13 1 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 111.79 0.00097043 279460000 157650 192110 131110 171750 190800 188390 263810 302240 162900 263890 FALSE FALSE TRUE 192718.6986 214575.5934 179613.0449 181132.2676 171803.2821 198253.8091 207444.8384 228115.1661 195592.5358 198107.0795 0.972800664 1.083129355 0.906646271 0.914314966 0.867224344 1.000740658 1.047134907 1.151474075 0.987307148 1 17.59592091 -6.610559756 3.816775398 1.058761949 0.95064285 0.307648729 0.067692896 0.275279953 7.759759368 0.028575712 0.021723254 2.45E-07 6.610559756 -0.108119098 HRDYETATLSDIK ddPTM_HeLa_A486_30min_R1 1 HRDYETATLSDIK 13 1 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 97.86 0.0033599 201550000 167580 130890 85672 44612 152110 142430 172940 177180 106700 174390 FALSE FALSE TRUE 155833.5074 120517.7997 118846.4928 103858.9906 133030.9454 124858.4347 129668.5828 136839.9818 115948.8419 130721.6089 1.192102122 0.921942445 0.909157206 0.794505143 1.017666066 0.955147628 0.991944514 1.046804602 0.886990627 1 16.99613812 HREDS(ph)DVEMVEDDSR ddPTM_HeLa_A485_30min_R1 1 HREDSDVEMVEDDSR 15 1 E7EUC9;A0A087WX20;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692;H0Y4N0;H0Y806;A0A669KB03 E7EUC9 MLH1 DNA mismatch repair protein Mlh1 1 0 HREDS(1)DVEMVEDDSR 150.65 2.50E-08 246560000 186440 316680 253960 248240 321700 251600 357040 326520 237270 312340 TRUE FALSE FALSE 227912.9348 353712.9713 347910.3722 261800.7226 289670.4184 264773.387 280755.4873 246440.458 284887.9126 234479.3862 0.971995613 1.508503485 1.483756751 1.11651914 1.235376905 1.129196861 1.197356799 1.051011187 1.214980631 1 17.83910157 -5.285466609 24.66732006 1.143594414 1.340127121 0.236241266 0.152000881 856.0276216 878830.5677 0.041769839 0.061995589 5.18E-06 5.285466609 0.196532707 HREDS(ph)DVEMVEDDSR ddPTM_HeLa_A486_30min_R1 1 HREDSDVEMVEDDSR 15 1 E7EUC9;A0A087WX20;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692;H0Y4N0;H0Y806;A0A669KB03 E7EUC9 MLH1 DNA mismatch repair protein Mlh1 1 0 HREDS(1)DVEMVEDDSR 154.84 6.53E-08 0 177640 197210 146260 69715 198510 163290 200960 186200 169250 217350 TRUE FALSE FALSE 165188.3533 181582.3614 202895.789 162300.0432 173611.0248 143144.94 150677.6825 143806.3247 183920.7263 162924.1453 1.013897314 1.114520878 1.24533898 0.99616937 1.065594203 0.878598686 0.924833346 0.88265815 1.128873354 1 17.3138409 -5.736339524 2.00944479 0.957849674 1.118453488 0.310148544 0.091855578 0.354839061 2.94832703 0.03115451 0.041221735 1.84E-06 5.736339524 0.160603814 HREDS(ph)DVEMVEDDSRK ddPTM_HeLa_A485_30min_R1 2 HREDSDVEMVEDDSRK 16 2 E7EUC9;A0A087WX20;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692;H0Y4N0;H0Y806;A0A669KB03 E7EUC9 MLH1 DNA mismatch repair protein Mlh1 1 0 HREDS(1)DVEMVEDDSRK;HREDS(1)DVEMVEDDSRK ; 202.43 1.51E-25 3053300000 1105220 1206310 1011970 1924080 1682250 1164920 1953660 1781560 1367620 2236900 TRUE FALSE FALSE 1351072.376 1347377.461 1386339.815 2029187.618 1514759.283 1225913.41 1536244.581 1344629.617 1642088.789 1679281.997 0.8045536 0.802353305 0.825555099 1.208366208 0.902027942 0.730022362 0.914822277 0.800716984 0.97785172 1 20.67941309 -11.29781241 0.013560537 1.933170171 1.00E-05 0.073732146 0.127024868 16177.64849 28.12535571 2258.688354 1774.100702 5.04E-12 11.29781241 -1.933160163 HREDS(ph)DVEMVEDDSRK ddPTM_HeLa_A486_30min_R1 2 HREDSDVEMVEDDSRK 16 2 E7EUC9;A0A087WX20;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692;H0Y4N0;H0Y806;A0A669KB03 E7EUC9 MLH1 DNA mismatch repair protein Mlh1 1 0 HREDS(1)DVEMVEDDSRK;HREDS(1)DVEMVEDDSRK ; 185.71 3.83E-18 2884500000 2020270 1838480 1060110 1211310 2156530 2299650 2962100 2839300 1718660 3333800 TRUE FALSE FALSE 1878659.506 1692792.149 1470612.983 2819990.896 1886037.899 2015942.564 2220951.25 2192853.371 1867634.833 2498994.781 0.751766078 0.67738923 0.588481814 1.128450094 0.754718623 0.80670139 0.888737851 0.877494178 0.747354435 1 21.25291646 -1.630755695 0.199336171 0.931849658 2.94E-39 0.196628753 0.134098759 72.24270875 1.082874641 0.25800136 19.95279282 0.023401533 1.630755695 -0.931849658 HRELREDS(ph)IR ddPTM_HeLa_A485_30min_R1 1 HRELREDSIR 10 2 C9JK69;P17342-3;P17342-2;P17342 C9JK69 NPR3 Atrial natriuretic peptide receptor 3 1 0 HRELREDS(1)IR 94.547 0.0011378 107160000 9052.7 9417 8189 10321 8759.8 12512 22295 25749 14431 20285 TRUE FALSE FALSE 11066.44188 10518.23623 11218.45187 10884.8101 7887.643554 13167.10897 17531.49112 19434.01738 17327.16933 15228.32282 0.726701293 0.690702211 0.73668335 0.714774058 0.517958783 0.864646037 1.151242414 1.276175821 1.137825192 1 13.89446944 -6.629097022 3.411806845 1.166393164 0.683231473 0.86136212 0.087310343 0.079305678 1.812384192 0.035352727 0.026486351 2.35E-07 6.629097022 -0.48316169 HRELREDS(ph)IR ddPTM_HeLa_A486_30min_R1 1 HRELREDSIR 10 2 C9JK69;P17342-3;P17342-2;P17342 C9JK69 NPR3 Atrial natriuretic peptide receptor 3 1 0 HRELREDS(1)IR 56.569 0.016371 91451000 8362.1 5300.1 9160.9 2736.8 14921 9857.7 11389 12323 9649.4 15061 TRUE FALSE FALSE 7775.959972 4880.100773 12708.24582 6371.40871 13049.46905 8641.5572 8539.351739 9517.321909 10485.81776 11289.62757 0.688770283 0.432264106 1.12565678 0.564359512 1.15588127 0.765442185 0.756389145 0.843014692 0.928801034 1 13.46271027 -4.747188095 24.99998219 0.875132906 0.560517178 0.354443669 0.177959466 250.0744999 438680.0442 0.041973691 0.109917924 1.79E-05 4.747188095 -0.314615728 HRGS(ph)ADYSMEAK ddPTM_HeLa_A485_30min_R1 6 HRGSADYSMEAK 12 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK ;;;;; 143.67 1.04E-07 2331347000 2150441 2468668 1966322 2641703 2784238 2393185 3457100 3539590 2067656 3321430 TRUE FALSE FALSE 2628799.182 2757357.248 2693746.333 2786012.546 2507029.489 2518488.466 2718462.343 2671500.003 2482615.594 2493458.627 1.054278243 1.105836374 1.080325257 1.117328563 1.005442585 1.010038201 1.090237597 1.071403381 0.995651408 1 21.24971683 -5.760379926 24.99999426 1.034499935 1.089961925 0.440155484 0.033132822 31.11873083 734299.7488 0.010347579 0.012605441 1.74E-06 5.760379926 0.05546199 HRGS(ph)ADYSMEAK ddPTM_HeLa_A486_30min_R1 8 HRGSADYSMEAK 12 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 HRGS(0.997)ADYS(0.002)MEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK;HRGS(1)ADYSMEAK ;;;;;;; 160.64 1.54E-10 2744067000 3186660 2735648 1892071 996695 2796940 2841371 3264070 3181200 2184670 3801440 TRUE FALSE FALSE 2963291.59 2518865.289 2624731.563 2320356.33 2446121.705 2490831.535 2447365.162 2456910.205 2374038.955 2849534.681 1.039921223 0.883956706 0.921108832 0.814293065 0.858428473 0.874118694 0.858864845 0.86221453 0.83313215 1 21.44229492 -3.50653264 1.307997404 0.867363858 1.806123845 0.480653449 0.04957607 6.490210563 2.26963126 0.013184217 13.1415474 0.000311507 3.50653264 0.938759987 HRGS(ph)EEDPLLSPVETWK ddPTM_HeLa_A485_30min_R1 1 HRGSEEDPLLSPVETWK 17 1 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 HRGS(0.976)EEDPLLS(0.024)PVETWK 126.63 1.03E-05 33416000 55606 54964 46767 65503 63864 54770 80805 73370 51631 88560 TRUE FALSE FALSE 67975.36286 61391.56168 64068.05944 69081.26303 57505.47592 57637.67251 63540.35163 55375.89246 61992.86811 66483.62183 1.022437722 0.923408803 0.963666805 1.039071897 0.864957028 0.866945436 0.955729395 0.832925327 0.932453233 1 16.02071136 -5.771400985 24.99999396 0.900731571 0.980916526 0.32361281 0.054419682 230.1010749 577468.1564 0.016157407 0.018534386 1.69E-06 5.771400985 0.080184955 HRGSEEDPLLS(ph)PVETWK ddPTM_HeLa_A485_30min_R1 2 HRGSEEDPLLSPVETWK 17 1 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 HRGS(0.002)EEDPLLS(0.998)PVETWK;HRGS(0.003)EEDPLLS(0.995)PVET(0.002)WK ; 116.45 5.49E-05 104429000 127181 126531 92936 125528 146234 129819 168231 180757 101508 172530 TRUE FALSE FALSE 155471.9747 141327.6998 127316.8938 132385.2768 131674.4295 136616.1221 132287.0725 136426.0623 121879.7245 129521.4462 1.200357001 1.091152886 0.982979248 1.02211086 1.016622601 1.054776071 1.021352652 1.053308671 0.941000337 1 16.98283147 -4.41724105 2.808991141 1.016055742 1.207412671 0.767017103 0.032222946 0.146114734 1.878686569 0.00813968 0.053232995 3.83E-05 4.41724105 0.191356928 HRHPLDHDCSGEGHPTSR ddPTM_HeLa_A485_30min_R1 2 HRHPLDHDCSGEGHPTSR 18 1 B8ZZ56;A0A087X0D9;E7EV05;E9PFU9;B4DEN4;Q8WV99-2;Q8WV99 B8ZZ56 ZFAND2B AN1-type zinc finger protein 2B 0 0 ; ; 64.83 0.0044542 49795000 24839 37748 21741.9 9627.5 15437.8 6074.5 3044.4 21113 13162.7 18491.3 FALSE FALSE TRUE 30364.34986 42162.30024 29785.13357 10153.42595 13900.75843 6392.551427 2393.93907 15935.00365 15804.33315 13881.75922 2.187356039 3.037244745 2.145631047 0.731422134 1.001368646 0.460500094 0.172452139 1.147909526 1.138496419 1 13.76090279 -5.167446604 3.517949508 0.775007237 2.612090707 0.825248209 0.350955338 0.093174324 2.166118873 0.101618856 0.187806008 6.80E-06 5.167446604 1.83708347 HRHS(ph)PTGPPGFPR ddPTM_HeLa_A485_30min_R1 8 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 HRHS(0.903)PT(0.097)GPPGFPR;HRHS(0.836)PT(0.164)GPPGFPR;HRHS(0.847)PT(0.153)GPPGFPR;HRHS(0.545)PT(0.455)GPPGFPR;HRHS(0.88)PT(0.12)GPPGFPR;HRHS(0.996)PT(0.004)GPPGFPR;HRHS(0.762)PT(0.238)GPPGFPR;HRHS(0.999)PT(0.001)GPPGFPR ;;;;;;; 129.71 1.32E-05 16788804000 918455 1404738 1364400 973257 1469166 1286572 1396007 1681115 1278333 1262021 TRUE FALSE FALSE 1122762.146 1569009.89 1869148.337 1026423.565 1322890.674 1353934.921 1097738.7 1268818.91 1534882.708 947422.3905 1.18507031 1.656082762 1.972877521 1.083385379 1.396305057 1.429072116 1.158658177 1.339232557 1.620061678 1 19.85364824 -5.278627632 24.99314008 1.308475548 1.60981752 0.25463646 0.24554446 1137.190654 1653566.648 0.068765051 0.102285395 5.26E-06 5.278627632 0.301341972 HRHS(ph)PTGPPGFPR ddPTM_HeLa_A486_30min_R1 7 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 HRHS(0.754)PT(0.246)GPPGFPR;HRHS(0.993)PT(0.007)GPPGFPR;HRHS(0.696)PT(0.304)GPPGFPR;HRHS(0.978)PT(0.022)GPPGFPR;HRHS(0.5)PT(0.5)GPPGFPR;HRHS(0.851)PT(0.149)GPPGFPR;HRHS(0.747)PT(0.253)GPPGFPR ;;;;;; 138.57 3.27E-06 19401080000 2039900 1745020 1716640 629237 2206510 1826020 1799187 1917690 1542007 2128990 TRUE FALSE FALSE 1896913.544 1606738.26 2381368.981 1464895.536 1929748.941 1600744.218 1349011.383 1481073.85 1675669.408 1595877.047 1.188633891 1.006805796 1.492200785 0.917925061 1.209209033 1.003049841 0.845310349 0.928062631 1.049999066 1 20.60591807 -6.398531905 4.641250898 0.94673176 1.158319085 0.308920526 0.148452658 0.281328863 9.410002344 0.052078529 0.045359253 3.99E-07 6.398531905 0.211587325 HRHSPT(ph)GPPGFPR ddPTM_HeLa_A485_30min_R1 2 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 HRHS(0.392)PT(0.608)GPPGFPR;HRHS(0.365)PT(0.635)GPPGFPR ; 124.86 3.51E-05 7939883000 296000 484040 411850 305890 457400 431130 450690 602420 440810 391140 TRUE FALSE FALSE 361844.1788 540644.2674 564210.4535 322599.9961 411859.65 453703.3001 354396.3997 454675.5504 529276.5237 293635.9964 1.232288218 1.84120569 1.921462152 1.098639132 1.402619757 1.54512153 1.206924233 1.548432604 1.802491963 1 18.16366931 -5.254166335 24.98274774 1.396491073 1.682607359 0.183933112 0.278729354 997.0966786 3424997.099 0.07555516 0.127433549 5.57E-06 5.254166335 0.286116286 HRLDLGEDYPSGK(ac)K ddPTM_HeLa_A486_30min_R1 1 HRLDLGEDYPSGKK 14 2 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 1 HRLDLGEDYPSGK(1)K 74.678 0.031431 7720900 10816 13458 8363.3 3876.9 13473 13986 15049 13959 11967 15685 FALSE TRUE FALSE 10057.85425 12391.53907 11601.79374 9025.619128 11783.09071 12260.54952 11283.58103 10780.84042 13004.3092 11757.37391 0.855450744 1.053937653 0.986767439 0.767656043 1.002187291 1.042796599 0.959702491 0.916942891 1.106055595 1 13.52127824 HRLLS(ph)GDSTEKR ddPTM_HeLa_A485_30min_R1 1 HRLLSGDSTEKR 12 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 HRLLS(1)GDSTEKR 163.8 1.16E-10 142480000 90061 150320 94324 83143 153740 155740 236720 297440 98246 113350 TRUE FALSE FALSE 110094.7587 167898.6164 129218.3727 87684.89156 138433.1058 163894.3056 186142.8382 224492.3736 117963.071 85093.93105 1.293802712 1.973097427 1.518538057 1.030448241 1.626827014 1.92603989 2.187498402 2.638171381 1.38626891 1 16.37676862 -6.180493658 4.071081334 1.953678999 1.48065966 0.090582749 0.473555744 0.414063363 12.87696875 0.159742933 0.15824479 6.60E-07 6.180493658 -0.473019339 HRLLS(ph)GDSTEKR ddPTM_HeLa_A486_30min_R1 2 HRLLSGDSTEKR 12 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 HRLLS(1)GDSTEKR;HRLLS(1)GDSTEKR ; 153.94 3.55E-08 129143000 230609 161849 110964 90114 235609 168114 258913 248655 130029 290370 TRUE FALSE FALSE 214444.5 149023.4958 153932.2325 209789.9461 206056.7223 147373.8039 194130.2289 192041.6846 141300.0184 217659.462 0.985229395 0.684663531 0.707215901 0.963844825 0.946693152 0.677084298 0.891898873 0.882303406 0.649179306 1 17.73171321 -10.16383445 4.475549949 1.000031304 0.821118884 0.158098514 0.123987232 3.96E-05 7.39E-06 0.118536172 0.028744045 6.86E-11 10.16383445 -0.17891242 HRMS(ph)PGVAGSPR ddPTM_HeLa_A485_30min_R1 4 HRMSPGVAGSPR 12 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR ;;; 145.46 6.44E-06 536624000 219346 308541 271720 203425 348662 262877 351390 420228 248584 306869 TRUE FALSE FALSE 268138.761 344622.186 372240.5352 214537.5927 313947.9871 276640.8332 276312.6559 317166.4241 298472.5287 230372.2058 1.163937117 1.495936477 1.615822247 0.931265089 1.362785871 1.200842924 1.199418371 1.376756467 1.295609979 1 17.81360714 -13.50945738 0.193625906 1.03E-10 1.348747322 0.189456925 0.179976004 197.4287406 2.304110383 77.48945235 0.483820585 3.09E-14 13.50945738 1.348747322 HRMS(ph)PGVAGSPR ddPTM_HeLa_A486_30min_R1 4 HRMSPGVAGSPR 12 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR;HRMS(1)PGVAGSPR ;;; 154.99 3.19E-08 1101445000 433502 372507 281190 113682.5 422153 321601 389731 411252 337990 404366 TRUE FALSE FALSE 403115.7484 342988.1887 390074.2985 264658.6052 369202.6343 281925.1384 292216.1816 317618.8972 367287.2453 303110.1216 1.329931664 1.131562967 1.286906212 0.87314341 1.218047858 0.930107965 0.964059465 1.047866351 1.211728739 1 18.2094825 -5.238631833 24.85594757 1.037289279 1.237676571 0.424030309 0.114277795 750.972613 818418.2731 0.029943955 0.051817103 5.77E-06 5.238631833 0.200387291 HRNTET(ph)SKSPEKDVPMVEK ddPTM_HeLa_A486_30min_R1 1 HRNTETSKSPEKDVPMVEK 19 3 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 HRNT(0.115)ET(0.295)S(0.295)KS(0.295)PEKDVPMVEK 145.63 8.75E-09 704000000 1163400 603640 197520 593980 565600 1009200 1629500 1357600 518930 2378800 TRUE FALSE FALSE 1081851.668 555805.368 274005.0338 1382815.458 494657.174 884695.1648 1221781.865 1048504.116 563911.2702 1783132.997 0.606713952 0.311701578 0.153664945 0.775497655 0.277409018 0.496146483 0.685188299 0.58801229 0.316247454 1 20.76598288 -14 0.223026504 3.721076314 0.404278681 0.404894426 0.19109451 155.3359951 1.55528216 190.3233111 0.353975841 1.00E-14 14 -3.316797633 HRNTETSKS(ph)PEKDVPMVEK ddPTM_HeLa_A486_30min_R1 1 HRNTETSKSPEKDVPMVEK 19 3 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 HRNT(0.041)ET(0.224)S(0.154)KS(0.582)PEKDVPMVEK 134.76 2.25E-06 647190000 532950 276140 93127 279430 250600 552730 794310 710960 245570 1147700 TRUE FALSE FALSE 495592.9572 254257.6607 129188.2684 650527.1616 219167.4112 484539.7923 595565.2366 549089.9281 266856.2053 860308.4497 0.576064268 0.295542443 0.150165058 0.756155727 0.254754456 0.563216359 0.692269426 0.638247745 0.310186661 1 19.71449448 -13.99999999 0.158156267 2.928698092 0.327533019 0.395286327 0.196148923 134.1254811 1.225254685 81.27578283 0.855700828 1.00E-14 13.99999999 -2.601165073 HRPELIEYDK ddPTM_HeLa_A485_30min_R1 1 HRPELIEYDK 10 1 K7EJH8;O43707 K7EJH8;O43707 ACTN4 Alpha-actinin-4 0 0 72.006 0.034822 6948200 9548.3 10300 8034.3 11430 10866 10131 12450 10942 8843.9 14976 FALSE FALSE TRUE 11672.28639 11504.4954 11006.52191 12054.39196 9784.142887 10661.44349 9789.955793 8258.457344 10618.78961 11242.75881 1.03820482 1.023280459 0.978987639 1.072191635 0.870261744 0.948294246 0.870778779 0.734557904 0.944500348 1 13.45670848 -5.770279131 24.99853816 0.882940478 1.024304414 0.462452868 0.069735781 162.69875 460105.905 0.021508614 0.024748308 1.70E-06 5.770279131 0.141363936 HRPELIEYDK ddPTM_HeLa_A486_30min_R1 1 HRPELIEYDK 10 1 K7EJH8;O43707 K7EJH8;O43707 ACTN4 Alpha-actinin-4 0 0 96.89 0.0074648 159870000 153200 127690 67632 45213 124130 147510 153930 128960 99844 181790 FALSE FALSE TRUE 142461.4711 117571.3794 93820.92165 105258.1489 108560.4579 129311.716 115415.0859 99598.62318 108498.5583 136268.6007 1.045446055 0.862791419 0.688499927 0.772431421 0.796665243 0.948947265 0.846967572 0.730899287 0.796210996 1 17.05609365 -10.11425857 4.855458986 1.000007343 0.826875873 0.204834993 0.098764657 9.69E-06 1.77E-06 0.10002562 0.024258563 7.69E-11 10.11425857 -0.17313147 HRPELIEYDKLR ddPTM_HeLa_A485_30min_R1 2 HRPELIEYDKLR 12 2 K7EJH8;O43707 K7EJH8;O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 107.37 0.0004049 1067250000 878270 1094800 727120 970780 1107360 1088540 1573280 2028270 849020 1425640 FALSE FALSE TRUE 1073638.132 1222827.337 996111.946 1023811.253 997107.3502 1145534.271 1237135.875 1530833.602 1019410.526 1070254.185 1.003161816 1.142557865 0.930724645 0.9566057 0.931654708 1.070338511 1.155927155 1.430345822 0.952493847 1 20.02952205 -6.605897388 3.563954435 1.170030863 0.995949688 0.183231523 0.132662518 0.324124069 8.152354542 0.052724393 0.040043821 2.48E-07 6.605897388 -0.174081174 HRPELIEYDKLR ddPTM_HeLa_A486_30min_R1 2 HRPELIEYDKLR 12 2 K7EJH8;O43707 K7EJH8;O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 112.51 0.00028393 691990000 1502890 793540 679740 580280 1391790 1120280 1343040 1275310 542230 1603010 FALSE FALSE TRUE 1397545.172 730657.0004 942953.5321 1350921.166 1217218.72 982071.2438 1006997.187 984949.7528 589230.933 1201605.862 1.163064542 0.608067107 0.784744451 1.124263128 1.012993327 0.817298979 0.838042838 0.81969453 0.490369556 1 20.19653233 -6.916463947 1.764658581 0.745264843 0.916568998 0.114003594 0.191529603 0.825365039 5.143551752 0.114929389 0.062150276 1.21E-07 6.916463947 0.171304155 HRPS(ph)AGGPDSAGR ddPTM_HeLa_A485_30min_R1 3 HRPSAGGPDSAGR 13 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 HRPS(1)AGGPDSAGR;HRPS(1)AGGPDSAGR;HRPS(1)AGGPDSAGR ;; 130.38 1.02E-05 322575000 151694.8 193389 192884 153053.3 261402 180448 231783 264501 172262.5 217383 TRUE FALSE FALSE 185438.7849 216004.1613 264239.8182 161414.2142 235375.899 189895.9783 182260.6686 199631.715 206834.0037 163193.4187 1.136312888 1.323608286 1.619181829 0.989097572 1.442312447 1.163625223 1.11683835 1.223282879 1.267416329 1 17.31622335 -6.355980308 24.99874991 1.165849479 1.303527561 0.157081893 0.170193011 112.7456583 29804.1233 0.058724161 0.051789843 4.41E-07 6.355980308 0.137678082 HRPS(ph)AGGPDSAGR ddPTM_HeLa_A486_30min_R1 2 HRPSAGGPDSAGR 13 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 HRPS(1)AGGPDSAGR;HRPS(1)AGGPDSAGR ; 138.97 2.30E-06 357070000 221830 209633 201029 73220 275490 208970 246290 240900 189321 230110 TRUE FALSE FALSE 206280.8625 193020.9176 278872.8125 170459.8603 240935.4754 183189.4061 184665.637 186052.3288 205731.4967 172488.9582 1.195907637 1.119033471 1.616757475 0.988236361 1.396816804 1.062035552 1.070593961 1.078633269 1.192722704 1 17.39614449 -6.289224143 24.42321108 1.085073951 1.259682382 0.239914941 0.162310973 852.6701419 749506.5067 0.054855432 0.048390633 5.14E-07 6.289224143 0.174608431 HRPS(ph)PPAT(ph)PPPK ddPTM_HeLa_A485_30min_R1 6 HRPSPPATPPPK 12 1 A9Z1X7;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK ;;;;; 105.53 0.00048818 36922660000 3978490 4554490 3426910 4979560 5474260 4787050 6750420 6835100 3997310 6562090 TRUE FALSE FALSE 4863491.375 5087097.987 4694666.615 5251580.754 4929223.453 5037692.536 5308137.621 5158781.008 4799533.452 4926281.729 0.987254007 1.032644551 0.952983786 1.066033378 1.000597149 1.022615598 1.077514018 1.047195693 0.974271005 1 22.23206771 -5.267330342 24.99534174 1.029691789 0.995129159 0.17817879 0.034654518 844.8818976 3584843.575 0.009608125 0.01464517 5.40E-06 5.267330342 -0.03456263 HRPS(ph)PPAT(ph)PPPK ddPTM_HeLa_A486_30min_R1 5 HRPSPPATPPPK 12 1 A9Z1X7;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK;HRPS(1)PPAT(1)PPPK ;;;; 98.507 0.0010793 24282950000 4596930 4224410 2497040 1750870 4146030 4469540 5191420 5125570 3519740 5854280 TRUE FALSE FALSE 4274708.946 3889652.367 3463960.761 4076113.844 3625996.257 3918133.598 3892471.807 3958589.601 3824833.897 4388330.183 0.974108321 0.88636274 0.789357368 0.928853043 0.826281548 0.892852961 0.887005226 0.902071958 0.871592095 1 22.06524065 -10.57077376 2.669165249 1.008434394 0.882007076 0.342595544 0.047999109 17619091.74 16884582.77 1054325.758 0.011893864 2.69E-11 10.57077376 -0.126427318 HRPS(ph)PPATPPPK ddPTM_HeLa_A485_30min_R1 4 HRPSPPATPPPK 12 1 A9Z1X7;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 HRPS(1)PPATPPPK;HRPS(1)PPATPPPK;HRPS(1)PPATPPPK;HRPS(0.998)PPAT(0.002)PPPK ;;; 127.88 1.73E-05 1660110000 1454080 1773420 1407750 1641130 1952940 1898590 2483130 2728210 1474930 2260440 TRUE FALSE FALSE 1777535.079 1980806.042 1928535.306 1730780.776 1758498.436 1997997.237 1952588.99 2059112.22 1770934.922 1696953.908 1.047485775 1.167271564 1.136468879 1.019933876 1.036267649 1.177402183 1.150643503 1.213416705 1.04359636 1 20.69451595 -6.264942884 24.93880927 1.132452276 1.085886532 0.034768339 0.071982038 807.4897675 5747870.7 0.024933441 0.02289945 5.43E-07 6.264942884 -0.046565744 HRPS(ph)PPATPPPK ddPTM_HeLa_A486_30min_R1 4 HRPSPPATPPPK 12 1 A9Z1X7;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 HRPS(0.999)PPAT(0.001)PPPK;HRPS(1)PPATPPPK;HRPS(1)PPATPPPK;HRPS(1)PPATPPPK ;;; 108.63 0.00022874 2232830000 1312700 1178730 805065 501857 1283120 1193360 1459970 1420850 982630 1554080 TRUE FALSE FALSE 1220686.509 1085323.142 1116807.728 1168348.458 1122179.125 1046135.376 1094670.064 1097353.472 1067805.16 1164928.253 1.047864112 0.931665224 0.958692285 1.00293598 0.96330321 0.898025586 0.939688828 0.941992324 0.916627404 1 20.15180967 -6.009310983 24.41242194 0.935111796 0.980004348 0.245166162 0.037306182 466.1797956 1222278.806 0.011417082 0.012267762 9.79E-07 6.009310983 0.044892552 HRPSAGGPDS(ph)AGR ddPTM_HeLa_A485_30min_R1 4 HRPSAGGPDSAGR 13 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 HRPSAGGPDS(1)AGR;HRPSAGGPDS(1)AGR;HRPSAGGPDS(1)AGR;HRPS(0.003)AGGPDS(0.997)AGR ;;; 165.16 3.52E-12 325166000 103290.8 139372.9 127900.5 93687.9 177795.3 117897.6 147460.8 172253.7 124452.1 140925.8 TRUE FALSE FALSE 126267.4821 155671.3483 175216.2173 98805.83275 160093.3757 124070.536 115954.5954 130008.21 149428.4949 105795.5916 1.193504192 1.471435113 1.656176923 0.933931473 1.513232954 1.172738241 1.096024831 1.228862262 1.412426479 1 16.69091999 -5.251400714 24.99784232 1.21177112 1.443478351 0.249523954 0.194140665 1040.967492 2592165.964 0.051494075 0.08785566 5.61E-06 5.251400714 0.231707231 HRPSAGGPDS(ph)AGR ddPTM_HeLa_A486_30min_R1 3 HRPSAGGPDSAGR 13 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 HRPSAGGPDS(1)AGR;HRPSAGGPDS(1)AGR;HRPS(0.001)AGGPDS(0.999)AGR ;; 146.76 4.03E-08 282663000 95190 104656 79530.7 20211 116153 88134.2 106762 104872 86967 92332.9 TRUE FALSE FALSE 88517.67256 96362.67741 110327.1169 47052.22941 101584.0077 77261.09849 80049.01839 80994.93494 94505.36958 69212.14085 1.278932734 1.39227997 1.594042831 0.679826239 1.467719484 1.116294013 1.156574806 1.170241723 1.36544497 1 16.07873751 HRS(ph)EDCGGGPR ddPTM_HeLa_A485_30min_R1 2 HRSEDCGGGPR 11 1 Q9UGU0-2;Q9UGU0;A9JX13 Q9UGU0-2 TCF20 Transcription factor 20 1 0 HRS(1)EDCGGGPR;HRS(1)EDCGGGPR ; 74.769 0.00511 382080000 53480 71379 40364 68916 38133 62188 58356 84526 60387 81243 TRUE FALSE FALSE 65376.4415 79726.15314 55296.32329 72680.70658 34336.34463 65444.06752 45887.76388 63795.86597 72506.117 60990.61527 1.071909854 1.307187225 0.906636587 1.191670329 0.562977509 1.073018648 0.752374176 1.045994793 1.188807765 1 15.89629965 -4.771809949 24.9970075 0.956802657 1.189548556 0.182029532 0.189578555 287.3655405 692664.4906 0.048192339 0.102084394 1.69E-05 4.771809949 0.232745899 HRS(ph)EDCGGGPR ddPTM_HeLa_A486_30min_R1 2 HRSEDCGGGPR 11 1 Q9UGU0-2;Q9UGU0;A9JX13 Q9UGU0-2 TCF20 Transcription factor 20 1 0 HRS(1)EDCGGGPR;HRS(1)EDCGGGPR ; 99.927 0.00068188 179007000 66898 31224 76763 29723.3 38156 106724 47216 44160 105424 79986 TRUE FALSE FALSE 62208.79566 28749.69652 106487.6894 69197.34453 33370.11869 93557.47797 35402.0574 34105.73201 114562.2372 59956.98498 1.037557103 0.479505374 1.776068117 1.154116481 0.556567658 1.560409984 0.590457599 0.568836675 1.910740462 1 15.87164022 -7.75795055 24.9999782 1.455370122 0.97625611 0.150129097 0.465701932 161.9470149 1160535.408 0.337110382 0.115887619 1.75E-08 7.75795055 -0.479114012 HRS(ph)EPQHPK ddPTM_HeLa_A485_30min_R1 7 HRSEPQHPK 9 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK ;;;;;; 89.629 0.002157 2549028000 2256155 1279346 587002 2681415 745593 2405240 1417373 2002753 1466666 2447562 TRUE FALSE FALSE 2758028.896 1428954.386 804158.467 2827893.912 671359.143 2531174.647 1114539.68 1511574.687 1761012.413 1837429.837 1.501025421 0.777691946 0.437653972 1.539048651 0.365379472 1.377562613 0.606575368 0.822657092 0.958410698 1 20.80925773 -4.256209957 24.11877731 0.868869263 1.501025859 0.218987802 0.353810383 498.2928224 2298068.93 0.081085258 0.65911816 5.54E-05 4.256209957 0.632156595 HRS(ph)EPQHPK ddPTM_HeLa_A486_30min_R1 6 HRSEPQHPK 9 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK;HRS(1)EPQHPK ;;;;; 99.844 0.0011635 1020838000 562717 282572 573143 391550 234304 1610270 569576 569621 1029780 956710 TRUE FALSE FALSE 523273.4442 260179.9656 795079.3189 911548.1878 204915.4075 1411611.259 427062.0604 439930.733 1119042.16 717143.5889 0.729663421 0.362800379 1.10867521 1.271081834 0.285738325 1.968380226 0.595504258 0.613448603 1.560415762 1 19.45190248 -4.769319138 24.94299805 1.033710251 0.546231879 0.154734074 0.470056263 280.7782913 888799.8912 0.118073432 0.253112523 1.70E-05 4.769319138 -0.487478372 HRS(ph)IHEVDISNLEAALR ddPTM_HeLa_A485_30min_R1 4 HRSIHEVDISNLEAALR 17 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 HRS(1)IHEVDISNLEAALR;HRS(0.997)IHEVDIS(0.003)NLEAALR;HRS(1)IHEVDISNLEAALR;HRS(1)IHEVDISNLEAALR ;;; 194.7 1.21E-18 714868000 435788 660501 530539 391053 681867 691658 820948 1089900 546635 644808 TRUE FALSE FALSE 532727.5371 737740.8464 726807.4537 412415.2352 613977.9273 727872.1434 645545.7533 822600.3161 656339.6305 484069.2324 1.100519309 1.524039945 1.501453522 0.851975725 1.268368006 1.503652979 1.333581459 1.699344352 1.355879669 1 18.88485387 -6.189379073 8.614813037 1.419254465 1.25601513 0.053152157 0.243376178 0.987419813 110.8167106 0.080742824 0.080742446 6.47E-07 6.189379073 -0.163239335 HRS(ph)IHEVDISNLEAALR ddPTM_HeLa_A486_30min_R1 2 HRSIHEVDISNLEAALR 17 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 HRS(1)IHEVDISNLEAALR;HRS(1)IHEVDISNLEAALR ; 210.38 1.00E-25 449400000 437680 314270 343940 168439 529230 400780 503870 526310 350250 457280 TRUE FALSE FALSE 407000.8922 289366.1006 477122.779 392134.5044 462849.0385 351335.8384 377796.3966 406480.7023 380609.952 342774.1116 1.187373487 0.844188901 1.391945199 1.144002686 1.350303371 1.024977752 1.102173075 1.185855899 1.110381266 1 18.38689863 HRS(ph)LTAHSLLPLAEK ddPTM_HeLa_A485_30min_R1 2 HRSLTAHSLLPLAEK 15 1 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 0 HRS(0.456)LT(0.456)AHS(0.088)LLPLAEK;HRS(0.333)LT(0.333)AHS(0.333)LLPLAEK ; 136.26 5.21E-06 500050000 357230 469440 338330 369110 611510 604130 842260 1017000 442460 649140 TRUE FALSE FALSE 436694.5811 524336.9244 463492.3461 389273.5447 550625.9173 635761.3126 662304.2704 767579.1554 531257.6635 487321.3445 0.896112157 1.075957231 0.951102083 0.798802575 1.12990314 1.304603871 1.359070925 1.575098575 1.090158823 1 18.89451389 -6.029368482 3.758454932 1.304608832 0.94220569 0.481841555 0.160549987 0.181664548 5.490768305 0.052792145 0.055851066 9.35E-07 6.029368482 -0.362403142 HRS(ph)LTAHSLLPLAEK ddPTM_HeLa_A486_30min_R1 1 HRSLTAHSLLPLAEK 15 1 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 0 HRS(0.443)LT(0.443)AHS(0.113)LLPLAEK 127.17 1.43E-05 181880000 295840 239850 160420 89855 325890 271950 413200 409620 211000 302150 TRUE FALSE FALSE 275103.1437 220843.4125 222538.9202 209186.981 285013.8374 238399.574 309812.9896 316358.4679 229289.6499 226489.6733 1.214638794 0.975070559 0.982556586 0.923604939 1.258396611 1.05258474 1.367890134 1.396789811 1.012362491 1 17.78908575 -5.768926775 24.99379979 1.204066813 1.017517123 0.204148805 0.14797738 233.2353579 778565.3817 0.045511801 0.052596991 1.70E-06 5.768926775 -0.18654969 HRS(ph)NS(ph)FSDER ddPTM_HeLa_A485_30min_R1 5 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 HRS(1)NS(0.989)FS(0.011)DER;HRS(1)NS(1)FSDER;HRS(1)NS(0.563)FS(0.437)DER;HRS(1)NS(0.907)FS(0.093)DER;HRS(1)NS(0.971)FS(0.029)DER ;;;; 164.66 5.11E-07 15131540000 10570270 13784610 9174870 8944210 10475300 8912300 11432640 9826410 8392240 11468870 TRUE FALSE FALSE 12921590.09 15396600.23 12569036.21 9432809.544 9432342.351 9378934.247 8989963.068 7416467.54 10076485.59 8609891.778 1.500784264 1.7882455 1.459836724 1.095578178 1.095523915 1.089320806 1.044143562 0.861389171 1.17033824 1 23.03756367 -5.177450502 2.713031636 1.041552578 1.646321467 0.858915112 0.100563981 0.088698383 1.272325503 0.028026184 0.054351806 6.65E-06 5.177450502 0.604768889 HRS(ph)NS(ph)FSDER ddPTM_HeLa_A486_30min_R1 4 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 HRS(1)NS(0.968)FS(0.032)DER;HRS(0.998)NS(0.909)FS(0.093)DER;HRS(1)NS(0.654)FS(0.346)DER;HRS(1)NS(0.991)FS(0.009)DER ;;; 147.51 5.12E-06 8190440000 6460360 6161740 4233280 1580810 5121980 5216520 5458080 5442070 5052760 6279020 TRUE FALSE FALSE 6007522.125 5673461.282 5872519.387 3680205.57 4479533.508 4572958.8 4092410.654 4203029.461 5490737.305 4706712.522 1.276373285 1.205397877 1.247690263 0.781905747 0.951732974 0.971582347 0.869483878 0.892986228 1.16657588 1 22.16628831 -5.241887736 24.7781161 0.94119111 1.239378273 0.668449127 0.095247785 424.2971933 537717.8811 0.025452745 0.044001509 5.73E-06 5.241887736 0.298187163 HRS(ph)NSFSDER ddPTM_HeLa_A485_30min_R1 1 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRS(0.681)NS(0.316)FS(0.003)DER 136.3 2.43E-05 1079800000 170870 366300 257490 25088 125530 621890 141990 489410 327480 43602 TRUE FALSE FALSE 208879.442 409135.5986 352746.2661 26458.49391 113031.7924 654451.1988 111652.6765 369381.4301 393202.2322 32732.82384 6.381345009 12.49924543 10.77653024 0.808316876 3.453163497 19.99372868 3.411030992 11.28474072 12.01247513 1 14.99845045 -2.959155849 15.93515893 8.502477068 8.025337966 0 5.870777388 0 0 1.314086132 0 0.001098612 2.959155849 -0.477139102 HRS(ph)NSFSDER ddPTM_HeLa_A486_30min_R1 2 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRS(0.709)NS(0.291)FSDER;HRS(0.616)NS(0.373)FS(0.011)DER ; 154.36 1.45E-06 978930000 200858 343850 451690 20081.6 467800 220980 98287 220100 172969 57128 TRUE FALSE FALSE 186778.8914 316602.0737 626596.4647 46750.97967 409124.1619 193717.7344 73694.55303 169988.0347 187962.0922 42822.77696 4.361671631 7.393310201 14.63231741 1.09173162 9.553891433 4.523707898 1.720919526 3.969570561 4.389301805 1 15.38609073 -6.471916859 5.872692845 3.021283375 7.441021753 0.295623974 3.384753636 0.284884687 22.94572713 1.207429507 1.041568026 3.37E-07 6.471916859 4.419738378 HRS(ph)NSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_A485_30min_R1 4 HRSNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 35 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRS(0.332)NS(0.332)FS(0.332)DEREFS(0.003)GPS(0.001)TPTGTLEFEGGEVSLEGGK;HRS(0.256)NS(0.256)FS(0.256)DEREFS(0.057)GPS(0.074)T(0.074)PT(0.013)GT(0.013)LEFEGGEVSLEGGK;HRS(0.333)NS(0.333)FS(0.333)DEREFS(0.001)GPSTPTGTLEFEGGEVSLEGGK;HRS(0.29)NS(0.29)FS(0.29)DEREFS(0.054)GPS(0.076)T(0.001)PTGTLEFEGGEVSLEGGK ;;; 223.61 7.46E-40 4941560000 285196 740870 612139 99427 1518440 832850 1429960 2462110 724280 488187 TRUE FALSE FALSE 348636.8663 827508.3018 838594.6893 104858.4452 1367258.782 876456.7382 1124437.364 1858273.662 869636.3525 366490.9653 0.951283658 2.257922787 2.288172885 0.28611468 3.730675273 2.391482522 3.068117555 5.070448764 2.372872553 1 18.48341811 -5.777392075 24.99989826 3.121541989 1.564040931 0.284987503 1.130530021 293.3554593 459723.4037 0.342059149 0.389081121 1.67E-06 5.777392075 -1.557501059 HRS(ph)NSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_A486_30min_R1 2 HRSNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 35 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRS(0.192)NS(0.192)FS(0.192)DEREFS(0.192)GPS(0.192)T(0.038)PT(0.001)GTLEFEGGEVSLEGGK;HRS(0.381)NS(0.301)FS(0.301)DEREFS(0.009)GPS(0.002)T(0.002)PT(0.002)GT(0.002)LEFEGGEVSLEGGK ; 136.73 4.38E-07 555180000 128467 93492 131372 21297 300790 103289 182388 194865 108460 70598 TRUE FALSE FALSE 119462.1267 86083.35343 182242.7567 49580.49229 263062.1134 90546.25335 136752.5933 150498.4934 117861.4001 52919.80128 2.257418278 1.626675674 3.443753609 0.936898686 4.970958074 1.711008945 2.584147899 2.843897553 2.227170119 1 15.69152002 -8.070676506 8.277430194 1.000002237 2.546171252 0.163381582 1.048401639 3.57477951 418.7962557 0.943710593 0.244012945 8.50E-09 8.070676506 1.546169016 HRS(ph)PSGAGEGASCSDGPR ddPTM_HeLa_A486_30min_R1 1 HRSPSGAGEGASCSDGPR 18 1 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 HRS(0.95)PS(0.05)GAGEGASCSDGPR 79.426 0.0016045 102720000 29276 28735 28004 7697.9 37969 26393 28558 26509 33498 36645 TRUE FALSE FALSE 27223.90358 26457.93395 38847.89877 17921.10023 33206.57397 23136.9 21412.48634 20473.47939 36401.63361 27468.85348 0.991082631 0.963197607 1.414252648 0.652415298 1.20888096 0.842295803 0.779518751 0.745334326 1.325196686 1 14.74550907 -5.267924897 24.97621744 0.926539823 1.106879624 0.123424838 0.225668752 1098.584469 4230731.733 0.061716287 0.094057675 5.40E-06 5.267924897 0.180339801 HRSNS(ph)FSDER ddPTM_HeLa_A485_30min_R1 9 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRS(0.014)NS(0.986)FSDER;HRSNS(0.994)FS(0.006)DER;HRS(0.004)NS(0.994)FS(0.002)DER;HRS(0.263)NS(0.736)FS(0.001)DER;HRS(0.015)NS(0.984)FS(0.001)DER;HRS(0.296)NS(0.676)FS(0.028)DER;HRS(0.137)NS(0.859)FS(0.004)DER;HRS(0.035)NS(0.949)FS(0.016)DER;HRS(0.049)NS(0.846)FS(0.105)DER ;;;;;;;; 165.58 2.58E-07 6067832000 2036305 5623420 4185130 898393 4728230 4039060 4048460 5526430 3529750 1830328 TRUE FALSE FALSE 2489274.022 6281030.052 5733383.745 947469.9347 4257470.819 4250538.936 3183473.448 4171064.377 4238138.448 1374060.914 1.811618391 4.571143816 4.172583388 0.68953998 3.098458573 3.093413758 2.316835749 3.035574576 3.084389057 1 20.39001453 -10.8670343 2.399141219 0.089030346 2.899947719 0.223802453 1.046524237 5422671.079 2889896.058 28097273.97 0.276188488 1.36E-11 10.8670343 2.810917373 HRSNS(ph)FSDER ddPTM_HeLa_A486_30min_R1 4 HRSNSFSDER 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRSNS(0.978)FS(0.022)DER;HRSNS(0.986)FS(0.013)DER;HRS(0.021)NS(0.958)FS(0.021)DER;HRS(0.133)NS(0.834)FS(0.033)DER ;;; 134.04 2.71E-05 1851270000 2522850 2338410 2537540 228733 3211760 1462220 1883980 1935730 1935280 935080 TRUE FALSE FALSE 2346011.243 2153105.875 3520143.446 532501.9835 2808911.112 1281826.163 1412588.277 1495006.536 2103031.629 700929.8817 3.346998472 3.07178497 5.022104975 0.759707922 4.007406712 1.828750916 2.015306116 2.132890286 3.000345232 1 19.4189106 -1.000000001 0.084946386 2.59E-11 10.02994825 0.269952614 1.076931138 231.8301033 1.429213876 23.71743196 271.7066436 0.1 1.000000001 10.02994825 HRSNSFS(ph)DEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_A485_30min_R1 1 HRSNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 35 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 HRS(0.265)NS(0.265)FS(0.397)DEREFS(0.056)GPS(0.008)T(0.008)PT(0.001)GT(0.001)LEFEGGEVSLEGGK 194.73 4.93E-22 520520000 56338 142850 129430 38294 318080 217150 353550 567890 167600 112770 TRUE FALSE FALSE 68870.19374 159555.0649 177311.543 40385.90425 286410.8384 228519.6382 278011.1543 428614.0871 201235.7827 84658.51438 0.813505815 1.884690111 2.09443249 0.477044802 3.383130929 2.699310753 3.283912508 5.062858594 2.37702946 1 16.36936755 -5.776695168 24.99558177 3.173240773 1.413438699 0.359436702 1.055039433 239.8554527 392985.51 0.3186971 0.362702467 1.67E-06 5.776695168 -1.759802074 HRT(ph)KS(ph)RS(ph)PS(ph)PAPEK ddPTM_HeLa_A485_30min_R1 3 HRTKSRSPSPAPEK 14 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 4 0 HRT(1)KS(1)RS(1)PS(1)PAPEK;HRT(1)KS(1)RS(1)PS(1)PAPEK;HRT(1)KS(1)RS(1)PS(1)PAPEK ;; 68.49 0.0039995 1090270000 336552 364822 345255 751010 643750 400713 660180 708560 388458 1051330 TRUE FALSE FALSE 411416.8313 407484.7594 472979.1918 792035.7746 579655.9897 421693.7131 519127.1498 534784.549 466417.9575 789252.7793 0.521273845 0.516291827 0.599274661 1.003526114 0.734436425 0.534294872 0.657745102 0.677583359 0.590961438 1 19.59012791 -11.48561574 2.170506332 4.921386433 0.653803389 0.372420864 0.136772439 5202729.933 365114.3376 100563956.7 0.037155408 3.27E-12 11.48561574 -4.267583044 HRT(ph)KS(ph)RS(ph)PS(ph)PAPEK ddPTM_HeLa_A486_30min_R1 1 HRTKSRSPSPAPEK 14 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 4 0 HRT(1)KS(1)RS(1)PS(1)PAPEK 45.047 0.024149 611160000 165140 168870 116300 211340 231020 302230 354170 323330 188150 348270 TRUE FALSE FALSE 153564.5388 155488.1262 161334.4746 492010.2005 202043.3174 264943.9354 265552.92 249714.8172 204458.9935 261060.9251 0.588232569 0.595600916 0.617995491 1.884656619 0.773931669 1.014873962 1.017206692 0.956538467 0.783184973 1 17.99402701 -5.051810217 24.99997056 1.059860802 0.595631661 0.342584569 0.292702901 365.5951903 176410.0026 0.078560762 0.136073015 8.88E-06 5.051810217 -0.464229141 HRTPS(ph)LR ddPTM_HeLa_A486_30min_R1 1 HRTPSLR 7 1 P49023-3 P49023-3 PXN Paxillin 1 0 HRT(0.117)PS(0.883)LR 75.378 0.0080612 101210000 22755 19398 18974 3358.7 26933 17944 22253 23175 17440 16128 TRUE FALSE FALSE 21159.99201 17860.83183 26321.24094 7819.223339 23554.812 15730.25172 16685.06403 17898.55841 18951.71324 12089.44382 1.75028664 1.477390697 2.17720859 0.646781064 1.948378465 1.301155946 1.380134957 1.480511318 1.567624906 1 13.56146025 -11.95299354 0.090394552 2.76E-15 1.960319686 0.158674963 0.383963738 252.5992482 2.482579659 63.02798883 10.08702236 1.11E-12 11.95299354 1.960319686 HRTSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_HeLa_A485_30min_R1 1 HRTSGGDHAPDSPSGENSPAPQGR 24 1 E9PL60;E9PII7;H0YDE3;H0YDU2;E9PRI1;Q96NY9 E9PL60 MUS81 Crossover junction endonuclease MUS81 1 0 HRTSGGDHAPDS(0.98)PS(0.019)GENS(0.001)PAPQGR 94.606 0.0011972 74621000 12844 44982 34907 5978.7 40022 23024 37041 57478 28891 10934 TRUE FALSE FALSE 15701.10349 50242.25361 47820.5519 6305.301242 36037.26915 24229.50104 29126.88775 43381.43038 34689.1587 8208.355025 1.912819736 6.120867513 5.825838643 0.768156497 4.390315604 2.951809585 3.548443953 5.285033389 4.226079231 1 13.00287742 HRTSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_HeLa_A486_30min_R1 1 HRTSGGDHAPDSPSGENSPAPQGR 24 1 E9PL60;E9PII7;H0YDE3;H0YDU2;E9PRI1;Q96NY9 E9PL60 MUS81 Crossover junction endonuclease MUS81 1 0 HRT(0.006)S(0.006)GGDHAPDS(0.913)PS(0.07)GENS(0.006)PAPQGR 55.158 0.018496 22386000 18371 18523 17716 2384.9 27050 11979 14932 18433 15265 10092 TRUE FALSE FALSE 17083.28777 17055.17002 24576.10965 5552.167726 23657.13677 10501.15277 11195.85567 14236.20829 16588.18249 7564.897512 2.258231224 2.254514353 3.248703583 0.733938261 3.127225019 1.388142107 1.479974533 1.881877219 2.192783506 1 12.88510482 -6.535785118 0.085771841 1.14E-12 3.891997482 0.205246473 0.704293437 41.82449364 1.835633224 33.14081246 46.77010209 2.91E-07 6.535785118 3.891997482 HRWPT(ph)GDNIHAEHQVR ddPTM_HeLa_A485_30min_R1 6 HRWPTGDNIHAEHQVR 16 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR ;;;;; 214.55 1.12E-25 11927570000 3777486 5320325 4712008 3778519 4880640 4021442 5720982 6821980 4205917 5793014 TRUE FALSE FALSE 4617774.729 5942490.728 6455175.842 3984929.925 4394706.345 4231998.485 4498647.46 5148878.709 5050005.963 4348922.222 1.061820491 1.366428376 1.484316231 0.916302873 1.010527694 0.973114319 1.034428125 1.183943618 1.161208618 1 22.05222648 -5.267599034 24.99601248 1.043357896 1.310412368 0.489146933 0.123671364 427.6608225 1735457.712 0.036404012 0.055555003 5.40E-06 5.267599034 0.267054472 HRWPT(ph)GDNIHAEHQVR ddPTM_HeLa_A486_30min_R1 4 HRWPTGDNIHAEHQVR 16 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR ;;; 253.99 8.60E-50 7776600000 5533700 3394360 3407200 1601500 5088400 3712150 3907970 3894910 2377680 5374000 TRUE FALSE FALSE 5145816.206 3125378.552 4726559.088 3728372.935 4450165.425 3254182.675 2930154.572 3008124.018 2583779.217 4028315.421 1.277411441 0.77585249 1.173333911 0.92554146 1.104721195 0.807827177 0.727389558 0.746744905 0.641404395 1 21.94174522 -6.363287279 4.885986897 0.75954688 1.035350693 0.426205387 0.153479123 0.21092527 7.985930367 0.051176867 0.044890274 4.33E-07 6.363287279 0.275803812 HS(ph)ASPVVFTSAR ddPTM_HeLa_A485_30min_R1 1 HSASPVVFTSAR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HS(0.5)AS(0.5)PVVFTSAR 72.175 0.0080129 164800000 83344 102450 78649 72022 101330 88934 111300 100890 78826 103640 TRUE FALSE FALSE 101883.5853 114430.6363 107744.538 75956.37949 91241.22941 93590.44672 87519.84576 76146.56931 94645.65517 77804.45535 1.309482661 1.470746576 1.38481193 0.976247172 1.172699288 1.202893154 1.124869333 0.978691631 1.216455468 1 16.24756515 -5.241485897 22.5737805 1.103946756 1.39658724 0.681369131 0.091454745 132.1174589 149465.7678 0.024283308 0.041952457 5.73E-06 5.241485897 0.292640484 HS(ph)ASPVVFTSAR ddPTM_HeLa_A486_30min_R1 1 HSASPVVFTSAR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HS(0.715)AS(0.285)PVVFTSAR 125.97 2.96E-05 837290000 255420 256610 200610 74496 284490 236790 269040 284600 206030 276630 TRUE FALSE FALSE 237516.377 236275.289 278291.5645 173430.4528 248806.6114 207577.2573 201723.3464 219802.7928 223888.8463 207360.0474 1.145429797 1.139444613 1.342069352 0.83637352 1.199877288 1.001047501 0.972816841 1.06000551 1.079710624 1 17.66177843 -5.250688877 24.99999513 1.02846837 1.202027573 0.420146646 0.100644386 737.9634207 1716110.401 0.026288133 0.044975964 5.61E-06 5.250688877 0.173559203 HS(ph)CSGS(ph)SPPR ddPTM_HeLa_A485_30min_R1 1 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HS(0.991)CS(0.074)GS(0.539)S(0.397)PPR 78.964 0.003365 0 63751 74659 57580 84359 67267 50625 70214 57714 73076 104630 TRUE FALSE FALSE 77932.19001 83389.7206 78881.2381 88967.31856 60569.66129 53275.64672 55212.2053 43559.55101 87741.68291 78547.66657 0.992164292 1.061644785 1.00424674 1.13265387 0.771119804 0.678258808 0.702913374 0.554561999 1.117050152 1 16.2612808 -5.772948576 24.95697414 0.770372267 1.045572892 0.356570438 0.156501256 203.7389872 441793.875 0.046887002 0.053612183 1.69E-06 5.772948576 0.275200624 HS(ph)CSGSS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HS(0.699)CS(0.281)GS(0.02)S(1)PPR;HS(0.782)CS(0.215)GS(0.304)S(0.7)PPR ; 128.41 0.00019441 813230000 431530 572700 457110 571190 607490 416130 591270 556700 507120 732280 TRUE FALSE FALSE 527522.3597 639672.2832 626214.0109 602392.6634 547006.1626 437917.9233 464940.3343 420168.4521 608894.3324 549736.0726 0.959592041 1.163598889 1.139117555 1.09578522 0.995034144 0.796596667 0.845751912 0.764309408 1.107612112 1 19.06837962 -5.975883487 3.756044935 0.884478591 1.096985138 0.400136449 0.106050574 0.201280496 6.191421035 0.034223428 0.037715371 1.06E-06 5.975883487 0.212506548 HS(ph)CSGSS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HS(1)CSGSS(1)PPR;HS(0.975)CS(0.025)GS(0.037)S(0.962)PPR ; 162.38 1.13E-06 803400000 705630 614590 523730 174445 556000 718260 693120 622160 723270 790160 TRUE FALSE FALSE 656168.9809 565887.6501 726532.282 406116.776 486261.2955 629648.3839 519694.0449 480507.7497 785963.6259 592298.7929 1.107834405 0.955409089 1.226631374 0.685662002 0.820972964 1.063058699 0.877418714 0.811259039 1.326971514 1 19.17596562 -10.23974921 13.71769032 0.999999531 0.972531332 0 0.189026211 0 0 0.179256752 0.043476148 5.76E-11 10.23974921 -0.027468199 HS(ph)DYINANY(ph)VDGYNK ddPTM_HeLa_A485_30min_R1 1 HSDYINANYVDGYNK 15 0 P23470-2;P23470 P23470-2 PTPRG Receptor-type tyrosine-protein phosphatase gamma 2 0 HS(1)DYINANY(0.5)VDGY(0.5)NK 73.881 0.014141 250730000 3039.2 1092.9 2017 2014.2 2205.6 2259.6 2883.4 1859.7 2484.8 2524.1 TRUE FALSE FALSE 3715.259555 1220.705148 2763.172234 2124.230646 1986.00272 2377.909162 2267.338035 1403.605659 2983.476568 1894.888323 1.96067468 0.644209547 1.458224319 1.121032105 1.04808431 1.254907286 1.196554967 0.740732656 1.574486756 1 10.88789711 -4.238338198 24.42831059 1.122944747 1.960675956 0.466412806 0.271133154 4138.896235 4376582.246 0.061949453 3.332451987 5.78E-05 4.238338198 0.837731209 HS(ph)DYINANY(ph)VDGYNK ddPTM_HeLa_A486_30min_R1 2 HSDYINANYVDGYNK 15 0 P23470-2;P23470 P23470-2 PTPRG Receptor-type tyrosine-protein phosphatase gamma 2 0 HS(1)DYINANY(0.5)VDGY(0.5)NK;HS(1)DY(0.001)INANY(0.5)VDGY(0.5)NK ; 71.558 0.016367 292403000 14895.4 7729.8 6155.6 3792.6 6301.1 6580.7 8496.8 8585.6 3720.6 7655.2 TRUE FALSE FALSE 13851.30938 7117.262497 8539.213173 8829.364467 5510.757283 5768.840142 6370.81077 6630.846302 4043.104604 5738.288093 2.413840009 1.240311114 1.488111617 1.538675703 0.96034866 1.005324244 1.110228463 1.155544336 0.704583761 1 12.48640469 -1 0.548818764 1.010060209 56.54703639 0.762269244 0.219435444 66.874273 0.615966204 0.10935534 4375.235524 0.1 1 55.53697618 HS(ph)DYINANYVDGYNK ddPTM_HeLa_A486_30min_R1 1 HSDYINANYVDGYNK 15 0 P23470-2;P23470 P23470-2 PTPRG Receptor-type tyrosine-protein phosphatase gamma 1 0 HS(1)DYINANYVDGYNK 67.997 0.010978 56024000 6952.2 8543.2 4054.8 2822.5 9231.8 6885 9506.5 10326 8586.9 9507 TRUE FALSE FALSE 6464.886681 7866.205718 5624.927151 6570.922641 8073.861561 6035.598702 7127.87315 7974.995215 9331.219406 7126.38532 0.907176134 1.103814257 0.789309994 0.922055481 1.132953271 0.846936901 1.000208778 1.11907999 1.309390243 1 12.79895478 -7.267217087 3.489820156 1.168632072 0.955513979 0.333704067 0.120838897 0.257015177 6.734313157 0.067724654 0.03219058 5.40E-08 7.267217087 -0.213118092 HS(ph)FNSFR ddPTM_HeLa_A485_30min_R1 4 HSFNSFR 7 0 P51828 P51828 ADCY7 Adenylate cyclase type 7 1 0 HS(0.999)FNS(0.001)FR;HS(0.999)FNS(0.001)FR;HS(1)FNSFR;HS(1)FNSFR ;;; 123.16 0.0017914 701419000 80012 169301 105092 102558.6 122709 117204 111565 127439 92688 107983 TRUE FALSE FALSE 97810.39336 189099.2792 143969.904 108161.1166 110491.6611 123340.6202 87728.22635 96184.38543 111289.6314 81064.82538 1.206570086 2.332692118 1.775984878 1.334254606 1.363003751 1.521506025 1.082198425 1.186511967 1.372847359 1 16.30678843 -5.266993296 4.295610652 1.276303616 1.835541128 0.386281174 0.290321988 0.191492662 9.003842766 0.078921384 0.130134704 5.41E-06 5.266993296 0.559237513 HS(ph)FNSFR ddPTM_HeLa_A486_30min_R1 4 HSFNSFR 7 0 P51828 P51828 ADCY7 Adenylate cyclase type 7 1 0 HS(1)FNSFR;HS(1)FNSFR;HS(1)FNSFR;HS(1)FNSFR ;;; 145.16 0.0012557 973760000 106568.3 307276 93276.9 67460.7 126455 101336.2 99390.8 118226 83357 137409.3 TRUE FALSE FALSE 99098.41249 282926.3307 129396.2137 157051.9189 110593.8348 88834.36995 74522.17059 91308.52066 90582.45188 103001.1169 0.962110077 2.746827794 1.256260297 1.524759377 1.073714908 0.862460259 0.723508374 0.886480879 0.879431744 1 16.65230046 -5.635599385 1.414680911 0.849105558 1.795825194 0.402365901 0.434239386 0.366826439 1.517396638 0.150693699 0.237131386 2.31E-06 5.635599385 0.946719636 HS(ph)GSDRSSFSHYSGLK ddPTM_HeLa_A485_30min_R1 1 HSGSDRSSFSHYSGLK 16 1 Q8NC51;Q8NC51-3 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 HS(0.259)GS(0.259)DRS(0.22)S(0.22)FS(0.042)HYSGLK 95.094 0.00046491 299110000 70777 140720 140080 28324 199400 92997 123130 134260 118340 62262 TRUE FALSE FALSE 86521.09947 157175.9799 191901.4212 29871.2684 179547.0359 97866.17912 96822.26962 101332.5245 142089.7525 46741.22925 1.851065983 3.362683918 4.105613487 0.63907751 3.841298972 2.09378702 2.071453215 2.167947359 3.039923314 1 15.51240806 -10.3142907 0.270349796 2.38E-15 2.800772314 0.177629253 0.990809024 33.62894456 1.892542504 27.38245174 1.341224759 4.85E-11 10.3142907 2.800772314 HS(ph)GSRSDEDRYQNGAER ddPTM_HeLa_A485_30min_R1 1 HSGSRSDEDRYQNGAER 17 2 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 HS(0.401)GS(0.344)RS(0.254)DEDRYQNGAER 84.573 0.0007535 926160000 68013 115170 146590 106510 224750 135370 191210 249530 129200 167200 TRUE FALSE FALSE 83142.25721 128638.1297 200819.7411 112328.3716 202373.1009 142457.7639 150356.4215 188332.3763 155129.2549 125520.1171 0.662381928 1.02484074 1.599900843 0.894903337 1.612276228 1.134939699 1.197867122 1.500415875 1.235891573 1 16.93755908 -4.451824722 3.970429545 1.283360404 0.69309403 0.400544124 0.229234179 0.207866829 5.975300856 0.053695822 0.245319663 3.53E-05 4.451824722 -0.590266374 HS(ph)HS(ph)HS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 2 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 0 HS(1)HS(1)HS(1)PMSTR;HS(1)HS(1)HS(1)PMSTR ; 102.38 0.00083537 1022580000 589920 762700 989570 1193460 1725700 640920 1000540 984240 1052910 1623620 TRUE FALSE FALSE 721145.6688 851891.1304 1355653.122 1258655.698 1553883.249 674477.5801 786766.4553 742853.5968 1264219.379 1218881.415 0.591645471 0.698912232 1.11221084 1.032631791 1.274843664 0.553357835 0.645482363 0.609455184 1.03719637 1 20.21712634 -6.29291889 24.99935944 0.736963344 0.943027261 0.112805348 0.233983305 1395.570479 1108283.85 0.086719212 0.076485941 5.09E-07 6.29291889 0.206063917 HS(ph)HS(ph)HS(ph)PMSTR ddPTM_HeLa_A486_30min_R1 1 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 0 HS(1)HS(1)HS(0.999)PMS(0.001)TR 73.834 0.0087607 716400000 407260 673950 758550 307020 1192200 808780 771720 874940 705770 631480 TRUE FALSE FALSE 378713.1771 620543.7475 1052280.875 714758.0759 1042663.159 709000.9467 578627.4936 675735.2618 766946.7119 473353.2978 0.800064516 1.310952623 2.223034845 1.509988584 2.202716584 1.497826148 1.222400892 1.427549496 1.620241616 1 18.85255785 -9.052985025 0.572944878 0.959551999 1.582612017 0.129829232 0.405075817 10.13687873 3.802022143 1.434432405 0.184966352 8.85E-10 9.052985025 0.623060017 HS(ph)HSHS(ph)PMSTR ddPTM_HeLa_A486_30min_R1 2 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 HS(0.574)HS(0.438)HS(0.988)PMSTR;HS(0.623)HS(0.404)HS(0.965)PMS(0.006)T(0.002)R ; 63.894 0.010557 68773000 37253 36562 43445 4794.1 61820 36879 34158 33290 35346 19560.8 TRUE FALSE FALSE 34641.75707 33664.69396 60268.0675 11160.90708 54065.95915 32329.24394 25611.30711 25710.59372 38409.81974 14662.64836 2.362585273 2.295949077 4.110312545 0.761179482 3.687325633 2.204870713 1.746704039 1.753475435 2.619569043 1 13.83985809 -9.729899211 0.197495875 1.67E-11 2.872119058 0.198796698 0.893254975 26.05041741 1.296391837 17.8250226 2.827346755 1.86E-10 9.729899211 2.872119058 HS(ph)ISHSPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR ddPTM_HeLa_A485_30min_R1 1 HSISHSPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR 41 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 HS(0.167)IS(0.167)HS(0.167)PNS(0.167)NS(0.167)NGS(0.167)FLAPETEPIVPELCIDHLWTETITNIR 49.479 0.0070673 42807000 4314.3 6993 11528 2413.9 12400 4620.9 7402 6890.1 8484.7 5931.5 TRUE FALSE FALSE 5274.001151 7810.770519 15792.68692 2545.765245 11165.41246 4862.843179 5820.502231 5200.292172 10187.50146 4452.886211 1.184400611 1.754091649 3.546618119 0.571711273 2.50745515 1.092065449 1.307130242 1.167847532 2.287842307 1 12.12052503 -6.283309773 24.89567206 1.377477169 1.920291849 0.101708016 0.804930623 1938.464782 2206600.549 0.277517167 0.244949459 5.21E-07 6.283309773 0.542814681 HS(ph)LDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_A485_30min_R1 1 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.426)LDS(0.375)DEEEDDDDGGS(0.069)S(0.069)KY(0.061)DILASEDVEGQEAATLPSEGGVR 153.97 1.79E-11 2722800000 57598 69578 45148 104930 85806 62374 121660 123760 61749 135230 TRUE FALSE FALSE 70410.47639 77714.54185 61850.12397 110662.0602 77262.85336 65639.80619 95666.34713 93407.66595 74141.4579 101519.6497 0.693565005 0.765512313 0.609242882 1.090055575 0.761063041 0.646572426 0.942343156 0.920094447 0.730316329 1 16.63139947 -4.834279911 0.041202108 1.519138865 7.55E-11 0.203321595 0.136861292 504.7176642 3.970748648 56.55451416 92.23875442 1.46E-05 4.834279911 -1.519138865 HS(ph)LDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_A486_30min_R1 2 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.209)LDS(0.197)DEEEDDDDGGS(0.185)S(0.185)KY(0.174)DILAS(0.05)EDVEGQEAATLPSEGGVR;HS(0.523)LDS(0.476)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ; 116.36 4.41E-07 352820000 60779 82378 48767 41384.1 88509 83247 112077 104328 67357 109393 TRUE FALSE FALSE 56518.70596 75850.06726 67650.88843 96344.27624 77407.37591 72976.83153 84034.14917 80574.79186 73195.55899 82000.28077 0.689250152 0.924997653 0.82500801 1.174926175 0.943989157 0.889958313 1.024803188 0.982616048 0.892625712 1 16.32334123 -3.858294784 1.202982444 0.975932575 0.274780896 0.477699618 0.088103917 3.103249503 1.991134125 0.025973261 3.42546715 0.000138581 3.858294784 -0.701151679 HS(ph)LEEGLDMVNR ddPTM_HeLa_A485_30min_R1 3 HSLEEGLDMVNR 12 0 Q7Z309-2;Q7Z309;Q7Z309-5 Q7Z309-2 FAM122B Protein FAM122B 1 0 HS(1)LEEGLDMVNR;HS(1)LEEGLDMVNR;HS(1)LEEGLDMVNR ;; 263.56 1.05E-33 577170000 300038 345279 320117 434008 535618 336577 456099 539060 371862 541034 TRUE FALSE FALSE 366780.418 385656.3755 438541.5995 457716.7581 482289.9913 354199.6513 358649.7227 406854.6898 446491.2925 406164.1808 0.903034869 0.949508582 1.079715101 1.126925464 1.187426204 0.872060285 0.883016621 1.001700074 1.099287711 1 18.63170349 -8.639025921 14.59604634 0.999963501 1.01201109 0.001050352 0.104063114 0 0 0.110126304 0.026709552 2.30E-09 8.639025921 0.012047589 HS(ph)LEEGLDMVNR ddPTM_HeLa_A486_30min_R1 2 HSLEEGLDMVNR 12 0 Q7Z309-2;Q7Z309;Q7Z309-5 Q7Z309-2 FAM122B Protein FAM122B 1 0 HS(1)LEEGLDMVNR;HS(1)LEEGLDMVNR ; 250.52 1.04E-28 680660000 376360 412490 297940 161248 518540 431370 524170 531510 363930 503090 TRUE FALSE FALSE 349979.1075 379802.7901 413310.3471 375393.493 453499.878 378151.9552 393017.1219 410496.7758 395475.7454 377112.9894 0.928048403 1.007132612 1.095985444 0.995440368 1.202557034 1.002755052 1.042173388 1.088524626 1.048692982 1 18.52463732 -4.420838695 2.918968906 1.062834319 0.924175529 0.321905705 0.058557248 0.336823101 4.746359817 0.014421107 0.089703566 3.79E-05 4.420838695 -0.13865879 HS(ph)LSPVPWEEDSFLQVK ddPTM_HeLa_A486_30min_R1 1 HSLSPVPWEEDSFLQVK 17 0 P10073 P10073 ZSCAN22 Zinc finger and SCAN domain-containing protein 22 1 0 HS(0.544)LS(0.455)PVPWEEDS(0.001)FLQVK 61.265 0.016606 22916000 19332 20102 13127 9025.3 22553 21870 27249 28827 18860 27412 TRUE FALSE FALSE 17976.92663 18509.04431 18210.12595 21011.35451 19724.19244 19171.90176 20431.01199 22263.72139 20494.79999 20547.85678 0.874880861 0.900777366 0.886229944 1.022556987 0.95991483 0.933036568 0.994313529 1.08350577 0.997417892 1 14.3267003 -4.87219484 0.443396316 1.025438296 0.80888077 0.592831559 0.040351372 2.236069735 0.507465703 0.034077177 0.242070161 1.34E-05 4.87219484 -0.216557526 HS(ph)LSSGGFSPVAGVGAQDGDYQRPHSAQPADR ddPTM_HeLa_A485_30min_R1 1 HSLSSGGFSPVAGVGAQDGDYQRPHSAQPADR 32 1 Q8N8Z6 Q8N8Z6 DCBLD1 "Discoidin, CUB and LCCL domain-containing protein 1" 1 0 HS(0.368)LS(0.299)S(0.331)GGFS(0.002)PVAGVGAQDGDYQRPHSAQPADR 99.25 0.00010145 844650000 5227.9 9734.4 4949.2 6765.4 8314.7 2649.2 9377.4 8728.3 4343.3 12453 TRUE FALSE FALSE 6390.828319 10872.7534 6780.115033 7134.976671 7486.859273 2787.908016 7373.841884 6587.67074 5214.960471 9348.69628 0.683606369 1.163023493 0.725247118 0.763205527 0.800845278 0.298213562 0.788756171 0.70466197 0.557827564 1 13.19054947 -5.250630685 1.728077144 0.666846029 0.91346197 0.118361788 0.206878712 0.633724243 3.671277955 0.06286465 0.134944267 5.62E-06 5.250630685 0.246615941 HS(ph)NLMLEELDKAQEDILK ddPTM_HeLa_A485_30min_R1 1 HSNLMLEELDKAQEDILK 18 1 O43491;H0Y5B0;E9PMV8;Q6ZSX4 O43491 EPB41L2 Band 4.1-like protein 2 1 0 HS(1)NLMLEELDKAQEDILK 70.235 0.0039604 21656000 20911 15315 8930.7 34826 18011 19699 41617 32438 17370 69908 TRUE FALSE FALSE 25562.57981 17105.95603 12234.53757 36728.4562 16217.7616 20730.40918 32725.18797 24482.52964 20855.99967 52481.22216 0.487080498 0.325944315 0.233122192 0.699839956 0.309020273 0.39500622 0.623559944 0.466500753 0.397399276 1 15.6795137 -14 0.268984311 4.834232221 0.396709709 0.612709144 0.134290637 139.4326262 1.358325276 296.7202065 0.167033176 1.00E-14 14 -4.437522512 HS(ph)NLMLEELDKAQEDILK ddPTM_HeLa_A486_30min_R1 2 HSNLMLEELDKAQEDILK 18 1 O43491;H0Y5B0;E9PMV8;Q6ZSX4 O43491 EPB41L2 Band 4.1-like protein 2 1 0 HS(1)NLMLEELDKAQEDILK;HS(1)NLMLEELDKAQEDILK ; 205.95 1.33E-25 50986000 153603 182300 68157 146304 128515 203243 323720 239230 122751 326500 TRUE FALSE FALSE 142836.2229 167853.8841 94549.21571 340603.1058 112395.4503 178168.9451 242721.832 184762.5514 133391.1555 244742.2748 0.583618923 0.685839356 0.386321553 1.391680722 0.459240033 0.727985981 0.991744611 0.754927 0.545027031 1 17.9009038 HS(ph)NSNSVDDTIVALNMR ddPTM_HeLa_A485_30min_R1 1 HSNSNSVDDTIVALNMR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 HS(0.328)NS(0.328)NS(0.328)VDDT(0.016)IVALNMR 82.707 0.0018141 41291000 2537.8 4257.9 3288.5 2773.9 4071.8 4661.5 7019.1 4915.8 4090.9 6697 TRUE FALSE FALSE 3102.324855 4755.824366 4505.052996 2925.431133 3666.397295 4905.568932 5519.411944 3710.192342 4911.906106 5027.561149 0.617063575 0.945950576 0.896071249 0.581878777 0.729259612 0.975735309 1.097830893 0.737970605 0.976995796 1 12.29564301 -6.262957672 24.85802575 0.950087462 0.763031773 0.367705806 0.133085421 165.2331522 2705238.339 0.047343844 0.04397693 5.46E-07 6.262957672 -0.187055689 HS(ph)NSNSVDDTIVALNMR ddPTM_HeLa_A486_30min_R1 1 HSNSNSVDDTIVALNMR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 HS(0.423)NS(0.287)NS(0.287)VDDT(0.002)IVALNMR 83.106 0.0016899 48978000 48453 50467 51209 15102 60033 47500 55336 48880 49762 55144 TRUE FALSE FALSE 45056.69491 46467.81112 71038.49622 35158.21921 52503.10135 41639.93294 41490.34752 37751.09104 54075.41023 41335.58347 1.090021989 1.124160039 1.718579738 0.850555774 1.270167177 1.007362893 1.003744088 0.91328313 1.308204837 1 15.33509663 -5.320519205 24.99999978 1.052271415 1.29225507 0.247003381 0.207605185 371.4329695 157173.274 0.057201749 0.084843932 4.78E-06 5.320519205 0.239983655 HS(ph)PAPRPLVQQPEPLPIQVAFR ddPTM_HeLa_A485_30min_R1 2 HSPAPRPLVQQPEPLPIQVAFR 22 1 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 HS(1)PAPRPLVQQPEPLPIQVAFR;HS(1)PAPRPLVQQPEPLPIQVAFR ; 106.04 0.00011088 128003000 78285 96034 83911 107448 138468 81374 137822 118817 86888 142648 TRUE FALSE FALSE 95699.22817 107264.3409 114953.1707 113317.6122 124681.6397 85634.61681 108375.2038 89676.94445 104325.6246 107088.4788 0.893646349 1.001642213 1.073441065 1.0581681 1.164286215 0.799662277 1.012015531 0.837409826 0.974200266 1 16.70844375 -6.262816323 24.99998424 0.919955572 1.039266841 0.289450989 0.088817142 161.0167226 2923417.98 0.030050444 0.027984912 5.46E-07 6.262816323 0.11931127 HS(ph)PAPRPLVQQPEPLPIQVAFR ddPTM_HeLa_A486_30min_R1 2 HSPAPRPLVQQPEPLPIQVAFR 22 1 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 HS(1)PAPRPLVQQPEPLPIQVAFR;HS(1)PAPRPLVQQPEPLPIQVAFR ; 129.24 1.19E-06 368950000 384460 380980 273560 221377 435700 382870 478340 479990 344620 527490 TRUE FALSE FALSE 357511.3394 350789.7573 379489.7582 515376.8438 381050.4433 335635.3921 358654.2726 370706.7551 374491.9391 395403.0706 0.904169355 0.887170038 0.959754201 1.30342145 0.963701275 0.848843666 0.907059907 0.937541417 0.947114393 1 18.59296455 -5.996017067 24.99872743 0.921045777 1.017349467 0.111194941 0.112918118 261.1468719 1639054.815 0.037898523 0.042791508 1.01E-06 5.996017067 0.09630369 HS(ph)PESPSIAVVESELVAEYITTER ddPTM_HeLa_A485_30min_R1 2 HSPESPSIAVVESELVAEYITTER 24 0 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2 Q7Z589 EMSY Protein EMSY 1 0 HS(0.469)PES(0.469)PS(0.061)IAVVESELVAEYITTER;HS(0.417)PES(0.363)PS(0.218)IAVVES(0.003)ELVAEYITTER ; 174.31 1.18E-14 72847000 18088 21926.2 25710.5 23725.9 32341.3 17023.4 28941 21541.3 18957.3 30166.4 TRUE FALSE FALSE 22111.6132 24490.27836 35221.88385 25021.98584 29121.28661 17914.7189 22757.51892 16258.2624 22761.85622 22646.47165 0.976382261 1.081416952 1.555292338 1.104895554 1.285908333 0.791060046 1.004903513 0.717915914 1.005095035 1 14.46699867 -6.258785537 24.93571488 0.892483931 1.208516181 0.435444121 0.168718942 213.7216002 2008148.495 0.056939471 0.054486496 5.51E-07 6.258785537 0.31603225 HS(ph)PESPSIAVVESELVAEYITTER ddPTM_HeLa_A486_30min_R1 1 HSPESPSIAVVESELVAEYITTER 24 0 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2 Q7Z589 EMSY Protein EMSY 1 0 HS(0.32)PES(0.32)PS(0.32)IAVVES(0.041)ELVAEYITTER 70.453 0.0066274 17127000 11626 10129 7416.3 4823.3 10165 10204 13370 9748.9 7415.2 10966 TRUE FALSE FALSE 10811.07744 9326.341151 10288.08998 11228.88616 8890.010915 8945.134227 10024.68459 7529.288287 8057.955506 8220.042223 1.315209477 1.134585553 1.251586025 1.366037528 1.081504288 1.088210253 1.219541739 0.915967106 0.980281523 1 13.00493009 -6.777541594 0.817428852 0.958051731 1.248244057 0.577209468 0.092364236 0.47615192 0.622240931 0.076581965 0.045344281 1.67E-07 6.777541594 0.290192326 HS(ph)PIAPS(ph)SPSPQVLAQK ddPTM_HeLa_A486_30min_R1 1 HSPIAPSSPSPQVLAQK 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 2 0 HS(0.999)PIAPS(0.554)S(0.444)PS(0.003)PQVLAQK 95.414 0.00015169 0 81812 100280 54848 44161 83822 105220 115030 97154 83006 112780 TRUE FALSE FALSE 76077.40128 92333.44759 76086.61448 102809.0398 73308.26315 92239.0262 86248.27734 75034.15506 90201.02691 84539.15393 0.899907294 1.092197441 0.900016276 1.216111529 0.867151607 1.091080546 1.020216945 0.887566903 1.066973381 1 16.36733205 -9.127989821 11.31632997 1.000008648 1.005823736 4.19E-05 0.108869045 0 0 0.096152362 0.023320373 7.45E-10 9.127989821 0.005815088 HS(ph)PIAPSS(ph)PSPQVLAQK ddPTM_HeLa_A486_30min_R1 1 HSPIAPSSPSPQVLAQK 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 2 0 HS(1)PIAPS(0.174)S(0.811)PS(0.015)PQVLAQK 119.01 6.10E-05 163520000 275910 308610 154860 101030 245820 296520 350990 303950 278670 348200 TRUE FALSE FALSE 256570.1338 284154.6197 214825.9393 235202.9458 214986.9634 259938.3772 263168.5896 234747.2202 302825.34 261008.4536 0.982995494 1.088679756 0.823061232 0.901131525 0.823678162 0.995900223 1.008276115 0.899385506 1.160212766 1 17.99373701 -7.751433769 24.98758082 1.080106403 0.940335029 0.294177004 0.086567548 230.1484215 574772.6908 0.061677677 0.022709921 1.77E-08 7.751433769 -0.139771374 HS(ph)PIKEEPCGSLSETVCK ddPTM_HeLa_A486_30min_R1 2 HSPIKEEPCGSLSETVCK 18 1 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 HS(0.996)PIKEEPCGS(0.004)LSETVCK;HS(0.527)PIKEEPCGS(0.471)LS(0.001)ETVCK ; 138.54 1.09E-06 431440000 278363 324961 120977 160151 220013 458806 504792 432991 295111 538080 TRUE FALSE FALSE 258851.1912 299209.9069 167822.5343 372839.6216 192416.918 402203.1805 378487.7025 334408.4014 320691.4591 403341.2657 0.641767191 0.741828155 0.416080745 0.924377576 0.477057357 0.997178357 0.938380807 0.829095433 0.795087154 1 18.62164149 -6.272469408 24.97843628 0.902918846 0.649201082 0.472729115 0.143171387 681.5849476 1543502.719 0.047975309 0.042700551 5.34E-07 6.272469408 -0.253717764 HS(ph)PIKEEPCGSLSETVCKR ddPTM_HeLa_A485_30min_R1 4 HSPIKEEPCGSLSETVCKR 19 2 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 HS(0.999)PIKEEPCGS(0.001)LSETVCKR;HS(1)PIKEEPCGSLSETVCKR;HS(1)PIKEEPCGSLSETVCKR;HS(1)PIKEEPCGSLSETVCKR ;;; 145.58 9.88E-09 998950000 711530 476303 311382 1221850 800240 572720 1088840 870810 530698 1582190 TRUE FALSE FALSE 869807.3938 532002.4926 426575.1595 1288596.572 720565.2958 602706.7336 856200.439 657242.4821 637204.2207 1187779.151 0.73229724 0.44789681 0.359136763 1.084878928 0.60664922 0.50742323 0.720841445 0.553337278 0.536466918 1 20.17983518 -10.30904386 3.25906272 1.002147613 0.615498446 0.268369785 0.189930861 56324336.48 78636559.81 1179158.752 0.046834781 4.91E-11 10.30904386 -0.386649167 HS(ph)PIKEEPCGSLSETVCKR ddPTM_HeLa_A486_30min_R1 2 HSPIKEEPCGSLSETVCKR 19 2 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 HS(1)PIKEEPCGSLSETVCKR;HS(1)PIKEEPCGSLSETVCKR ; 150.53 6.47E-09 570630000 592370 566450 218340 368690 464770 721650 964400 908550 448570 1058610 TRUE FALSE FALSE 550847.922 521562.439 302887.0953 858328.9526 406474.2128 632620.1602 723096.9196 701692.9985 487452.4088 793527.1656 0.694176515 0.657271057 0.381697198 1.081662972 0.5122373 0.797225587 0.911244064 0.884270922 0.614285723 1 19.59792009 -4.552343953 0.072365729 1.30706914 2.52E-12 0.196169035 0.188269119 164.0054357 2.079828039 11.28632884 28.86894995 2.80E-05 4.552343953 -1.30706914 HS(ph)PLGFAR ddPTM_HeLa_A486_30min_R1 1 HSPLGFAR 8 0 Q6V0I7-2;Q6V0I7-3;Q6V0I7 Q6V0I7-2 FAT4 Protocadherin Fat 4 1 0 HS(1)PLGFAR 96.143 0.0017215 0 59832 71772 51951 22164 77982 73311 73124 63669 81141 104130 TRUE FALSE FALSE 55638.08577 66084.52533 72067.8185 51598.91211 68200.77041 64266.63419 54827.60177 49172.95858 88174.36721 78055.17023 0.712804618 0.846638668 0.923293336 0.661056942 0.873750838 0.823348844 0.702421142 0.629976957 1.129641598 1 16.25220658 -7.77187496 24.99999021 1.064820943 0.778346122 0.601048078 0.095412222 162.5393642 389373.973 0.08935195 0.024073426 1.69E-08 7.77187496 -0.286474821 HS(ph)PPMVR ddPTM_HeLa_A485_30min_R1 2 HSPPMVR 7 0 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;O60256-4;I3L0S1;I3L4G9 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 HS(1)PPMVR;HS(1)PPMVR ; 99.802 0.0033585 437080000 185636 186813 202110 270520 242230 159560 220633 168967 202185 350790 TRUE FALSE FALSE 226930.0878 208659.1553 276878.8995 285297.8226 218112.7307 167914.3149 173492.9571 127527.5783 242761.6749 263344.5088 0.861723257 0.792342913 1.051394239 1.083363477 0.828241043 0.637622237 0.658806056 0.484261392 0.921840657 1 18.00659185 -6.004699281 7.333686176 0.706002731 0.945464162 0.262602078 0.158056524 0.154402711 56.11199258 0.050470298 0.054274597 9.89E-07 6.004699281 0.239461431 HS(ph)PPMVR ddPTM_HeLa_A486_30min_R1 3 HSPPMVR 7 0 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;O60256-4;I3L0S1;I3L4G9 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 HS(1)PPMVR;HS(1)PPMVR;HS(1)PPMVR ;; 109.71 0.0022269 682950000 439040 504440 390990 190989 486440 508000 592150 524200 485570 609050 TRUE FALSE FALSE 408265.5632 464466.3373 542391.7991 444632.044 425426.1593 445328.125 443987.8069 404851.1032 527659.5986 456539.9157 0.89426039 1.017361946 1.188049019 0.973917129 0.931848771 0.975441817 0.972505999 0.886781395 1.155779769 1 18.80038148 -4.258158038 23.62141575 1.007300055 0.894260296 0.134464735 0.088559914 328.7363503 2366218.903 0.022481381 0.155213678 5.52E-05 4.258158038 -0.113039759 HS(ph)PQQPSNGSLR ddPTM_HeLa_A485_30min_R1 3 HSPQQPSNGSLR 12 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 HS(1)PQQPSNGSLR;HS(1)PQQPSNGSLR;HS(0.999)PQQPS(0.001)NGSLR ;; 188.55 4.18E-13 366552000 159979 170418 167750 189120 222413 136987 185835 169168 185461 240870 TRUE FALSE FALSE 195565.7766 190346.9027 229807.7057 199451.1467 200268.7808 144159.4275 146129.8341 127679.2828 222681.3216 180825.5419 1.081516331 1.052654955 1.27088078 1.103003174 1.107524848 0.79722934 0.808126068 0.706090973 1.231470506 1 17.46423895 -6.199947842 7.254606958 0.884171821 1.127356478 0.349808495 0.144321172 0.281936996 29.14008316 0.047240076 0.047151004 6.31E-07 6.199947842 0.243184657 HS(ph)PQQPSNGSLR ddPTM_HeLa_A486_30min_R1 4 HSPQQPSNGSLR 12 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 HS(1)PQQPSNGSLR;HS(1)PQQPSNGSLR;HS(1)PQQPSNGSLR;HS(1)PQQPSNGSLR ;;; 190.57 3.17E-13 1170170000 907010 994290 796085 233906 874510 1103560 1013580 964818 990228 979730 TRUE FALSE FALSE 843433.2828 915498.8393 1104350.432 544544.989 764820.8013 967413.9874 759971.5634 745150.0032 1076061.76 734399.231 1.148467002 1.246595585 1.503746716 0.741483604 1.04142375 1.31728622 1.034820751 1.014638866 1.465227243 1 19.48620502 -5.230395987 24.99974331 1.093866949 1.294302261 0.189727093 0.200183535 1247.93767 1004982.986 0.054435882 0.094273461 5.88E-06 5.230395987 0.200435312 HS(ph)PS(ph)PRPR ddPTM_HeLa_A486_30min_R1 2 HSPSPRPR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 HS(1)PS(1)PRPR;HS(1)PS(1)PRPR ; 70.977 0.017675 531660000 232303 89591 155424 81212 111189 263214 121543 114370 205729 258794 TRUE FALSE FALSE 216019.7593 82491.48288 215608.3352 189065.6402 97242.63882 230741.3328 91131.65585 88330.44768 223561.7554 193990.2979 1.113559604 0.425235096 1.111438755 0.974613897 0.501275785 1.189447799 0.469774297 0.455334358 1.152437816 1 17.56562497 HS(ph)PTGPPGFPR ddPTM_HeLa_A486_30min_R1 3 HSPTGPPGFPR 11 0 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 HS(0.933)PT(0.067)GPPGFPR;HS(0.987)PT(0.013)GPPGFPR;HS(0.991)PT(0.009)GPPGFPR ;; 123.28 5.08E-05 382320000 432863 302676 209564 163062 295218 354115 390889 300328 262027 560974 TRUE FALSE FALSE 402521.539 278690.8514 290712.7931 379616.5767 258189.0056 310427.8917 293084.4378 231949.8705 284739.7113 420502.4591 0.957239441 0.66275677 0.691346238 0.902768982 0.614001179 0.738230859 0.696986264 0.551601698 0.677141608 1 18.68175471 -4.254095947 24.36947851 0.712482374 0.957239608 0.225392252 0.126304386 868.0303963 2880493.033 0.02998373 0.29643245 5.57E-05 4.254095947 0.244757234 HS(ph)PTLPEPGGLR ddPTM_HeLa_A485_30min_R1 1 HSPTLPEPGGLR 12 0 S4R446;Q86XN8;Q86XN8-2;Q86XN8-3 S4R446 MEX3D RNA-binding protein MEX3D 1 0 HS(0.946)PT(0.054)LPEPGGLR 61.657 0.019382 239290000 138740 177110 158970 195300 210850 168920 246540 198590 175150 247580 TRUE FALSE FALSE 169602.2344 197821.4738 217779.6183 205968.7445 189857.0337 177764.39 193864.715 149885.4911 210300.9984 185862.8624 0.912512764 1.064341049 1.171722072 1.108175898 1.021489884 0.9564277 1.043052455 0.806430554 1.131484772 1 17.50387901 -5.988447306 5.407211986 0.979567032 1.071650744 0.116617206 0.09736114 0.322737982 30.03102346 0.030847122 0.033825662 1.03E-06 5.988447306 0.092083712 HS(ph)PTLPEPGGLR ddPTM_HeLa_A486_30min_R1 2 HSPTLPEPGGLR 12 0 S4R446;Q86XN8;Q86XN8-2;Q86XN8-3 S4R446 MEX3D RNA-binding protein MEX3D 1 0 HS(0.988)PT(0.012)LPEPGGLR;HS(0.965)PT(0.035)LPEPGGLR ; 94.023 0.0012703 520050000 448180 503020 346290 157821 459650 467600 495450 508720 451000 577810 TRUE FALSE FALSE 416764.8964 463158.8632 480382.762 367415.2638 401996.4109 409912.2662 371483.1697 392895.5613 490093.0431 433122.6151 0.962233053 1.069348141 1.109114937 0.84829388 0.928135352 0.946411598 0.857685922 0.907123174 1.13153418 1 18.72441598 -5.252176397 24.9934672 0.937371181 1.049143651 0.235037399 0.082792726 905.5384605 2443326.575 0.022571557 0.038414177 5.60E-06 5.252176397 0.11177247 HS(ph)PTPQQSNR ddPTM_HeLa_A485_30min_R1 6 HSPTPQQSNR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 HS(1)PTPQQSNR;HS(0.975)PT(0.025)PQQSNR;HS(0.998)PT(0.002)PQQSNR;HS(0.998)PT(0.002)PQQSNR;HS(0.992)PT(0.008)PQQSNR;HS(0.844)PT(0.156)PQQSNR ;;;;; 154.23 1.81E-06 3357287000 1730248 1763940 706486 3101738 800980 1845136 1445406 2128693 1569522 2937345 TRUE FALSE FALSE 2115135.698 1970217.439 967844.5707 3271178.093 721231.6188 1941744.468 1136583.2 1606627.704 1884510.669 2205118.949 0.959193471 0.893474449 0.438908101 1.483447455 0.327071526 0.880562234 0.515429429 0.72859004 0.854607263 1 21.07242505 -4.539506506 24.99845285 0.765111057 0.942764095 0.035723233 0.308990318 690.3342497 1037858.485 0.074042062 0.196003421 2.89E-05 4.539506506 0.177653038 HS(ph)PTPQQSNR ddPTM_HeLa_A486_30min_R1 4 HSPTPQQSNR 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 HS(0.997)PT(0.003)PQQSNR;HS(0.995)PT(0.005)PQQSNR;HS(0.987)PT(0.013)PQQSNR;HS(0.912)PT(0.088)PQQSNR ;;; 134.21 4.00E-05 1314424000 976491 344121 934160 417153 385805 2185020 740785 630387 1676250 1326987 TRUE FALSE FALSE 908044.0235 316851.5987 1295891.77 971153.2657 337413.7394 1915454.448 555432.7578 486861.6414 1821548.7 994700.818 0.912881549 0.318539598 1.30279552 0.976327 0.339211282 1.925658865 0.558391777 0.489455354 1.831252842 1 19.92390314 -4.384479635 0.421635168 1.07697804 0.443532726 0.049817332 0.533231055 18.30832762 2.758169772 0.41847712 5.813118219 4.13E-05 4.384479635 -0.633445314 HS(ph)PVQMNR ddPTM_HeLa_A485_30min_R1 3 HSPVQMNR 8 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 HS(1)PVQMNR;HS(1)PVQMNR;HS(1)PVQMNR ;; 84.687 0.0048694 1494740000 438603 576162 747047 516010 705170 519946 663210 574250 591585 765350 TRUE FALSE FALSE 536168.7242 643539.134 1023410.773 544198.3197 634960.7988 547169.5686 521509.7656 433414.2871 710310.6832 574562.3302 0.933177648 1.120051037 1.781200609 0.9471528 1.105120829 0.952324125 0.907664388 0.754338153 1.236263928 1 19.13210388 HS(ph)PVQMNR ddPTM_HeLa_A486_30min_R1 5 HSPVQMNR 8 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 HS(1)PVQMNR;HS(1)PVQMNR;HS(1)PVQMNR;HS(1)PVQMNR;HS(1)PVQMNR ;;;; 149.33 0.00018491 2646701000 702917 834692 639208 253701.6 839567 768011 851955 839692 731129 910469 TRUE FALSE FALSE 653646.1482 768547.966 886726.4562 590630.1462 734260.6782 673261.6114 638786.8479 648512.4619 794503.8504 682481.6362 0.957749064 1.126107906 1.299267862 0.865415441 1.07586877 0.986490443 0.93597661 0.950226977 1.164139529 1 19.3804307 -5.272857008 24.99739915 0.995121512 1.127548252 0.236709938 0.107630989 1037.950903 2272455.129 0.03007956 0.04505696 5.34E-06 5.272857008 0.132426739 HS(ph)QFIGYPITLFVEK ddPTM_HeLa_A486_30min_R1 1 HSQFIGYPITLFVEK 15 0 P07900;P07900-2;G3V2J8;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 1 0 HS(0.906)QFIGY(0.094)PITLFVEK 96.993 0.00031501 0 24197 18549 12194 12796 19730 19502 23537 23255 17823 29452 TRUE FALSE FALSE 22500.91525 17079.10969 16915.84337 29789.73467 17255.27943 17096.04152 17647.79365 17960.34415 19367.91199 22077.0275 1.0192004 0.77361455 0.766219246 1.349354422 0.781594326 0.774381493 0.799373632 0.813530905 0.877288031 1 14.43025832 HS(ph)QPSPEPHSPTEPPAWGSSIVK ddPTM_HeLa_A486_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HS(0.316)QPS(0.259)PEPHS(0.213)PT(0.213)EPPAWGSSIVK 73.315 0.0047134 296170000 124730 114470 94692 30310 136810 111670 153010 151450 118600 135540 TRUE FALSE FALSE 115987.0711 105398.9803 131359.2783 70563.21178 119650.0141 97893.29078 114725.2796 116968.1411 128880.3435 101599.9018 1.141606134 1.037392541 1.292907533 0.694520472 1.177658758 0.963517573 1.129186915 1.151262345 1.268508544 1 16.63253948 -6.977988925 22.7253995 1.153976243 1.05074961 0.063408155 0.159537467 213.8094764 220746.2183 0.064288586 0.043336104 1.05E-07 6.977988925 -0.103226633 HS(ph)S(ph)ISPVRLPLNSSLGAELSR ddPTM_HeLa_A485_30min_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HS(0.825)S(0.86)IS(0.315)PVRLPLNSSLGAELSR 193.19 2.66E-19 437490000 26875 38261 30999 33491 47793 29108 49617 44791 35556 44757 TRUE FALSE FALSE 32853.25103 42735.29112 42466.82008 35320.52853 43034.56111 30632.04987 39015.92262 33805.93702 42691.76306 33599.90359 0.977778134 1.271887314 1.263897081 1.051209222 1.280794184 0.911670767 1.161191505 1.006131965 1.270591832 1 15.03616947 -6.238139894 24.99001322 1.076005055 1.173538395 0.128163341 0.128613008 1720.509279 1845344.845 0.040380685 0.040358314 5.78E-07 6.238139894 0.097533339 HS(ph)S(ph)PHQS(ph)EDEEDPR ddPTM_HeLa_A485_30min_R1 2 HSSPHQSEDEEDPR 14 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 3 0 HS(1)S(1)PHQS(1)EDEEDPR;HS(1)S(1)PHQS(1)EDEEDPR ; 125.45 2.26E-05 979220000 608300 728840 629340 836550 723520 576560 797730 664870 685620 1089470 TRUE FALSE FALSE 743614.2364 814071.4979 862159.055 882248.6082 651483.8084 606747.7901 627288.4686 501809.59 823217.6451 817885.1792 0.90919148 0.995337143 1.054132141 1.078694945 0.796546783 0.741849596 0.766963976 0.613545278 1.006519822 1 19.6415388 -5.772922533 24.87518676 0.794931709 1.01153831 0.366307671 0.118485315 188.7498816 408874.873 0.035585003 0.040693273 1.69E-06 5.772922533 0.216606601 HS(ph)S(ph)PHQS(ph)EDEEDPR ddPTM_HeLa_A486_30min_R1 2 HSSPHQSEDEEDPR 14 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 3 0 HS(1)S(1)PHQS(1)EDEEDPR;HS(1)S(1)PHQS(1)EDEEDPR ; 126.02 2.18E-05 908020000 744660 817420 511450 287150 581750 758670 776200 708530 699170 1023710 TRUE FALSE FALSE 692463.1794 752644.6622 709497.1371 668499.7118 508781.4904 665073.009 581986.5502 547213.1861 759774.6185 767366.3528 0.902389292 0.980815304 0.924587239 0.871161094 0.663022934 0.866695558 0.758420731 0.713105525 0.990106767 1 19.54955598 -5.400260991 3.940643921 0.81250723 0.939899779 0.145538068 0.104361415 0.345534492 9.263158694 0.028988739 0.044091746 3.98E-06 5.400260991 0.127392549 HS(ph)SADNLANEMTYITETEDVFYTYK ddPTM_HeLa_A485_30min_R1 1 HSSADNLANEMTYITETEDVFYTYK 25 0 J3KN34;P26045-2;P26045;P26045-3 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 0 HS(0.224)S(0.224)ADNLANEMT(0.224)Y(0.206)IT(0.056)ET(0.066)EDVFYTYK 48.489 0.032026 33906000 8602.6 8662.6 6959.3 13454 14135 11855 16272 12403 9010.5 21173 TRUE FALSE FALSE 10516.21869 9675.615715 9533.834671 14188.95795 12727.66977 12475.70947 12795.35427 9361.144803 10818.8247 15894.96076 0.661607087 0.608722215 0.599802341 0.89267021 0.800736155 0.784884572 0.804994392 0.5889379 0.680644946 1 13.95628183 -5.236647531 24.699013 0.776589905 0.621911685 0.344721174 0.105594791 853.9900138 850790.7164 0.029277633 0.050679907 5.80E-06 5.236647531 -0.15467822 HS(ph)SADNLANEMTYITETEDVFYTYK ddPTM_HeLa_A486_30min_R1 2 HSSADNLANEMTYITETEDVFYTYK 25 0 J3KN34;P26045-2;P26045;P26045-3 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 0 HS(0.316)S(0.316)ADNLANEMT(0.176)Y(0.191)ITET(0.001)EDVFYTYK;HS(0.476)S(0.476)ADNLANEMT(0.024)Y(0.022)ITET(0.001)EDVFYTYK ; 79.445 0.0048881 58008000 22373.1 21833.4 17925.1 9888.4 29571.4 26035.9 31791 31369.9 26178.3 30489.7 TRUE FALSE FALSE 20804.86122 20103.24187 24866.17877 23020.69493 25862.27927 22823.85537 23836.55555 24227.65857 28447.45612 22854.88067 0.910302772 0.879603887 1.088003002 1.007255092 1.131586712 0.998642509 1.042952527 1.060064978 1.244699394 1 14.48021467 -4.760913462 24.99999971 1.070004098 0.894953275 0.500331814 0.070616648 10.49847851 498927.7295 0.017855159 0.04179673 1.73E-05 4.760913462 -0.175050823 HS(ph)SEDFR ddPTM_HeLa_A486_30min_R1 1 HSSEDFR 7 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 HS(0.781)S(0.219)EDFR 103.56 0.0037445 443520000 885770 985960 596350 268560 792340 803820 895240 786710 783480 908410 TRUE FALSE FALSE 823682.0971 907828.9388 827272.6908 625221.2523 692957.3289 704652.861 671241.4831 607593.3068 851392.6772 680938.2232 1.209628229 1.333203083 1.214901239 0.918176174 1.017650802 1.034826416 0.985759736 0.892288443 1.250322934 1 19.37716439 -5.123246882 5.139052125 1.010196502 1.271807262 0.574498061 0.094625454 0.145965694 5.483296513 0.024713624 0.044115082 7.53E-06 5.123246882 0.261610759 HS(ph)SETFSSTTTVTPVSPSFAHNPK ddPTM_HeLa_A485_30min_R1 2 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 HS(0.55)S(0.441)ET(0.009)FSSTTTVTPVSPSFAHNPK;HS(0.293)S(0.293)ET(0.293)FS(0.117)S(0.003)T(0.001)TTVTPVSPSFAHNPK ; 159.56 6.27E-11 536650000 278901 318086 287895 206235 509820 292060 467440 415690 345690 441630 TRUE FALSE FALSE 340941.5653 355283.3907 394399.3408 217501.0958 459060.5307 307351.81 367567.6254 313741.3757 415066.8121 331539.7686 1.028357976 1.071616211 1.18959889 0.656033202 1.384631873 0.927043568 1.108668281 0.946315964 1.251936725 1 18.33882241 -5.790611665 24.99999372 1.091890529 1.007001189 0.084028794 0.181536795 733.2643737 628387.509 0.054005878 0.061246579 1.62E-06 5.790611665 -0.08488934 HS(ph)SETFSSTTTVTPVSPSFAHNPK ddPTM_HeLa_A486_30min_R1 1 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 HS(0.333)S(0.333)ET(0.333)FSSTTTVTPVSPSFAHNPK 136.96 1.07E-06 356200000 434270 451690 315090 13476 488310 413240 457500 417410 381960 224180 TRUE FALSE FALSE 403829.9156 415896.4394 437101.2864 31372.80904 427061.6065 362258.6503 343028.6611 322374.855 415068.6003 168043.8688 2.403121985 2.474927781 2.601114158 0.186694161 2.541369759 2.155738575 2.041304235 1.918397007 2.470001454 1 17.35847838 -10.26358246 5.728245158 0.999935452 2.067575089 0.190282152 0.672164442 0.00055429 7.13E-05 0.650850812 0.157845077 5.45E-11 10.26358246 1.067639637 HS(ph)SIS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A485_30min_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HS(0.557)S(0.557)IS(0.886)PVRLPLNSSLGAELSR 179.47 1.24E-18 1015000000 92611 118730 113010 111730 161590 113900 168420 175170 115310 172640 TRUE FALSE FALSE 113211.9974 132614.4407 154817.1017 117833.527 145501.5322 119863.6279 132435.6911 132209.2828 138451.6593 129604.0252 0.873522233 1.023227793 1.194539302 0.909181075 1.12266214 0.924844947 1.021848596 1.020101672 1.068266661 1 16.983751 -4.267395633 6.202397395 1.033005133 0.870099781 0.261031457 0.079887264 0.155307181 31.85685039 0.018878318 0.106857799 5.40E-05 4.267395633 -0.162905353 HS(ph)SIS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A486_30min_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HS(0.57)S(0.431)IS(0.999)PVRLPLNSSLGAELSR 92.198 0.001077 1543000000 228300 228190 175450 96090 233950 208180 250390 234170 200000 251660 TRUE FALSE FALSE 212297.3489 210107.3933 243388.9387 223702.3761 204605.8095 182496.8682 187739.7736 180854.6029 217336.161 188642.698 1.125393939 1.113784926 1.29021129 1.185852294 1.084620882 0.967420792 0.995213574 0.958715099 1.152104817 1 17.52529673 -5.941619798 3.554463562 1.011436125 1.181613026 0.570680043 0.066900788 0.172550256 4.465487824 0.022417941 0.025230298 1.14E-06 5.941619798 0.170176901 HS(ph)SISPVRLPLNSSLGAELSR ddPTM_HeLa_A485_30min_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 HS(0.332)S(0.332)IS(0.332)PVRLPLNS(0.004)SLGAELSR 92.098 0.00058611 69427000 23039 55453 72092 17550 75656 37823 41884 55776 46530 27310 TRUE FALSE FALSE 28163.94607 61937.74597 98761.8308 18508.71206 68123.423 39803.35379 32935.14124 42096.84855 55868.1442 20502.1196 1.373708993 3.021041101 4.817152212 0.902770661 3.322750248 1.94142628 1.606426159 2.053292506 2.724993575 1 14.32348545 -6.106276296 1.224837482 1.905442412 2.826798512 0.103740164 1.089652609 1.094503366 3.401976944 0.509284602 0.527335601 7.83E-07 6.106276296 0.9213561 HS(ph)SNPPLESHVGWVMDSR ddPTM_HeLa_A485_30min_R1 3 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 0 HS(0.582)S(0.418)NPPLESHVGWVMDSR;HS(0.722)S(0.278)NPPLESHVGWVMDSR;HS(0.5)S(0.5)NPPLESHVGWVMDSR ;; 224.83 1.01E-34 7751460000 239891 309020 267435 269936 380051 285997 408828 393490 275272 354776 TRUE FALSE FALSE 293253.9253 345157.2009 366370.3354 284681.9202 342211.788 300971.3607 321478.558 296985.9605 330516.5655 266336.8724 1.101063937 1.295942232 1.375589989 1.068879114 1.284883257 1.130040156 1.20703737 1.115076399 1.240971866 1 18.02289265 -14 0.171335542 0.19048923 1.251903953 0.296035626 0.093730484 159.9649552 1.512457911 43.8828621 0.323306408 1.00E-14 14 1.061414724 HS(ph)SNPPLESHVGWVMDSR ddPTM_HeLa_A486_30min_R1 2 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 0 HS(0.568)S(0.432)NPPLESHVGWVMDSR;HS(0.552)S(0.448)NPPLESHVGWVMDSR ; 162.72 8.90E-12 298840000 123962 129813 89618 57183 124290 125617 169665 156125 95845 147120 TRUE FALSE FALSE 115272.9039 119526.1451 124320.4897 133124.9139 108700.3892 110119.6517 127213.0225 120578.7457 104152.9218 110280.1944 1.045272948 1.083840537 1.127314749 1.207151607 0.985674625 0.998544229 1.153543691 1.09338532 0.944439048 1 16.75081419 -5.781698361 24.99851032 1.038611715 1.114421124 0.277716307 0.067422893 389.4311633 480534.966 0.022165913 0.025164444 1.65E-06 5.781698361 0.075809409 HS(ph)SPHISR ddPTM_HeLa_A485_30min_R1 1 HSSPHISR 8 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 0 HS(0.588)S(0.412)PHISR 86.898 0.0032825 316720000 76073 146400 144400 30828 154030 74526 105920 112920 100290 76487 TRUE FALSE FALSE 92995.1764 163520.2065 197819.569 32512.05558 138694.2324 78428.06612 83289.32671 85226.19295 120417.2831 57420.19854 1.619555118 2.847781977 3.445121647 0.566212873 2.415425859 1.365861981 1.450523141 1.484254585 2.097124116 1 15.8092707 -5.255733053 24.99796447 1.53559472 2.658515763 0.404667383 0.639427405 474.4873063 2078602.38 0.169427669 0.283423998 5.55E-06 5.255733053 1.122921043 HS(ph)SPHISR ddPTM_HeLa_A486_30min_R1 1 HSSPHISR 8 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 0 HS(0.546)S(0.454)PHISR 59.426 0.025879 265580000 132840 116730 114570 9849.6 121690 89632 93274 82697 123120 37312 TRUE FALSE FALSE 123528.602 107479.8897 158934.5723 22930.36657 106426.5055 78574.11515 69935.85865 63868.69836 133792.1407 27968.83234 4.416652096 3.842845077 5.682560157 0.819854268 3.80518229 2.809345567 2.500492613 2.28356685 4.78361553 1 14.7715324 -5.246836511 24.99852983 2.68353153 4.566901604 0.39011577 1.182237677 881.6766663 1509332.76 0.30468637 0.524763116 5.66E-06 5.246836511 1.883370074 HS(ph)SPHQS(ph)EDEEDPR ddPTM_HeLa_A485_30min_R1 1 HSSPHQSEDEEDPR 14 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 2 0 HS(0.5)S(0.5)PHQS(1)EDEEDPR 61.181 0.025504 2321700000 406100 532400 482530 476220 667650 418270 711140 720130 597180 705560 TRUE FALSE FALSE 496435.544 594659.5487 661037.9267 502234.6927 601176.4217 440169.9704 559199.1295 543516.9884 717028.5483 529676.8769 0.937242243 1.122683611 1.248002236 0.948190708 1.134987099 0.831016021 1.055736344 1.026129348 1.353709364 1 19.014753 HS(ph)SPHQS(ph)EDEEDPR ddPTM_HeLa_A486_30min_R1 1 HSSPHQSEDEEDPR 14 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 2 0 HS(0.654)S(0.346)PHQS(1)EDEEDPR 98.269 0.00077783 3244500000 1191300 1459300 1069900 517440 1533300 1329300 1486100 1590200 1194800 1516700 TRUE FALSE FALSE 1107796.022 1343659.753 1484193.933 1204626.47 1340979.217 1165304.481 1114262.062 1228146.174 1298366.226 1136908.448 0.974393342 1.181853962 1.305464777 1.059563303 1.17949622 1.024976535 0.98008073 1.080250724 1.142014758 1 20.11668465 -6.265257876 24.69776192 1.046393728 1.147177603 0.212516621 0.090625939 452.8386905 2928915.147 0.032044266 0.029354048 5.43E-07 6.265257876 0.100783875 HS(ph)SPSGTVAAR ddPTM_HeLa_A486_30min_R1 1 HSSPSGTVAAR 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 HS(0.5)S(0.5)PSGTVAAR 93.258 0.0017102 92047000 84925 74239 69715 20486 92964 69531 73781 92991 74616 67706 TRUE FALSE FALSE 78972.19605 68356.03127 96710.51503 47692.44331 81303.58827 60952.97216 55320.21342 71818.97928 81083.77496 50751.97691 1.556041771 1.346864407 1.905551683 0.939715972 1.601978745 1.200997003 1.090011006 1.415097178 1.597647617 1 15.6311764 -5.259397774 24.99879243 1.285184445 1.57722377 0.275365902 0.24940759 274.865867 3365617.761 0.066855419 0.108823987 5.50E-06 5.259397774 0.292039325 HS(ph)SPSSPTSPK ddPTM_HeLa_A486_30min_R1 1 HSSPSSPTSPK 11 0 O94921;C9JWL6;C9IYJ9;O94921-3;O94921-2 O94921 CDK14 Cyclin-dependent kinase 14 1 0 HS(0.332)S(0.332)PS(0.328)S(0.007)PTSPK 70.628 0.0096384 27626000 63982 65728 45704 17649 74109 68876 80746 75013 66289 74581 TRUE FALSE FALSE 59497.1922 60519.4739 63401.8128 41087.76393 64813.55818 60378.7794 60542.49676 57934.17742 72034.98389 55905.43216 1.064247067 1.082532977 1.13409038 0.734951191 1.159342763 1.080016325 1.082944795 1.036288875 1.288514928 1 15.77070085 HS(ph)STGDLLSLELQQAK ddPTM_HeLa_A486_30min_R1 1 HSSTGDLLSLELQQAK 16 0 Q9HBD1-6;Q9HBD1-4;Q9HBD1;H0Y5D9 Q9HBD1-6 RC3H2 Roquin-2 1 0 HS(0.392)S(0.303)T(0.303)GDLLS(0.003)LELQQAK 75.383 0.0015768 0 29681 25640 23017 17567 29529 29084 36169 33228 28816 37083 TRUE FALSE FALSE 27600.51517 23608.19302 31929.79882 40896.86379 25825.19747 25495.91178 27119.13364 25662.70976 31313.79408 27797.17543 0.992925171 0.849301868 1.148670623 1.471259693 0.929058333 0.917212321 0.975607529 0.923212858 1.126509928 1 14.76265067 HS(ph)STGDSADAGPPAAGSAR ddPTM_HeLa_A485_30min_R1 2 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 HS(0.359)S(0.273)T(0.359)GDS(0.008)ADAGPPAAGSAR;HS(0.364)S(0.27)T(0.364)GDS(0.002)ADAGPPAAGSAR ; 211.06 3.65E-26 1813870000 371060 482100 478010 392180 547480 394500 584320 551580 410850 575460 TRUE FALSE FALSE 453601.0169 538477.4013 654845.7907 413603.8003 492970.9689 415155.41 459475.2585 416304.1402 493303.8265 432008.4126 1.049981907 1.246451193 1.515817219 0.957397561 1.141114281 0.96098918 1.063579424 0.963648225 1.141884769 1 18.72069988 -5.293658762 24.99967486 1.033965466 1.268320381 0.441266751 0.122758091 580.8549983 450695.9459 0.034150468 0.050657664 5.09E-06 5.293658762 0.234354915 HS(ph)SYPAGTEDDEGMGEEPSPFR ddPTM_HeLa_A486_30min_R1 1 HSSYPAGTEDDEGMGEEPSPFR 22 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 1 0 HS(0.5)S(0.5)YPAGTEDDEGMGEEPSPFR 172.2 2.76E-14 149120000 63330 82695 55813 31212 80414 80431 80203 71203 60494 81083 TRUE FALSE FALSE 58890.89404 76141.94703 77425.28832 72663.11337 70327.72629 70508.24098 60135.3611 54991.63125 65737.66863 60779.28904 0.968930288 1.252761397 1.273876176 1.195524241 1.15710018 1.160070183 0.989405471 0.904775823 1.081580085 1 15.89129218 -6.743365314 4.962967192 0.984541145 1.178974986 0.488556049 0.08682541 0.149921657 9.648917886 0.035368185 0.025697696 1.81E-07 6.743365314 0.194433841 HS(ph)TS(ph)PS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 HSTSPSPSR 9 0 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 3 0 HS(0.968)T(0.161)S(0.869)PS(0.662)PS(0.34)R 66.326 0.0028924 0 63128 84334 55719 139690 71229 50090 93076 88253 84806 147720 TRUE FALSE FALSE 77170.60581 94196.12769 76331.77676 147320.911 64137.19066 52712.63495 73189.55224 66608.81337 101825.7863 110896.1226 0.695881912 0.849408667 0.688317815 1.328458629 0.578353771 0.475333436 0.659982969 0.6006415 0.918208716 1 16.7588494 -3.969195537 13.49285745 0.769780958 0.503614296 0.007956357 0.237515606 2510971.285 34804894.7 0.060640596 14527995.34 0.000107351 3.969195537 -0.266166663 HS(ph)TSPASSEYSWK ddPTM_HeLa_A485_30min_R1 3 HSTSPASSEYSWK 13 0 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 0 HS(0.344)T(0.344)S(0.269)PAS(0.034)S(0.01)EYSWK;HS(0.326)T(0.326)S(0.326)PAS(0.018)S(0.003)EYSWK;HS(0.378)T(0.299)S(0.299)PAS(0.024)SEYSWK ;; 100.54 0.00034259 490940000 1281140 1377850 1039800 966370 1539510 1295540 1615980 1737920 1248680 1590410 TRUE FALSE FALSE 1566125.173 1538977.572 1424465.29 1019160.346 1386230.979 1363372.471 1270712.672 1311692.395 1499278.622 1193950.056 1.311717492 1.288979856 1.19306941 0.853603834 1.161046035 1.141900755 1.064292987 1.098615799 1.255729764 1 20.18731106 -5.00449468 13.76279646 1.086081618 1.285561584 0.434322444 0.100149686 0.566063645 1740.71218 0.026676633 0.052026741 9.90E-06 5.00449468 0.199479967 HS(ph)WGPGK ddPTM_HeLa_A485_30min_R1 1 HSWGPGK 7 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 HS(1)WGPGK 58.676 0.02899 79078000 184320 163220 124130 267480 244150 185780 297450 274490 167940 359380 TRUE FALSE FALSE 225321.3481 182307.1592 170050.8525 282091.7551 219841.5687 195507.1535 233897.3776 207170.8971 201644.0176 269793.1799 0.835163247 0.67572931 0.630300783 1.045585197 0.814852209 0.724655655 0.866950668 0.767887821 0.747402205 1 18.04149435 -11.45640761 2.184376665 3.088335738 0.789751263 0.25034326 0.109104269 4703265.543 365567.367 48797354.78 0.027855531 3.50E-12 11.45640761 -2.298584475 HS(ph)WGPGK ddPTM_HeLa_A486_30min_R1 1 HSWGPGK 7 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 HS(1)WGPGK 69.954 0.015474 107600000 217640 225820 102340 104020 208040 232760 301740 281680 179220 291160 TRUE FALSE FALSE 202384.5599 207925.2008 141968.7888 242163.8169 181945.6833 204044.4377 226241.4605 217547.613 194754.9339 218251.6409 0.927299145 0.952685625 0.650482114 1.109562411 0.83365093 0.934904484 1.036608291 0.996774238 0.892341213 1 17.73563297 -6.032703711 1.060187392 0.977645258 0.879931648 0.099500361 0.113170243 1.21727914 2.916951554 0.055396136 0.06283702 9.27E-07 6.032703711 -0.09771361 HS(ph)YPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_A485_30min_R1 4 HSYPPALGSPGALAGAGVGAAGPLER 26 0 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 HS(0.971)Y(0.029)PPALGSPGALAGAGVGAAGPLER;HS(0.965)Y(0.035)PPALGSPGALAGAGVGAAGPLER;HS(0.924)Y(0.076)PPALGSPGALAGAGVGAAGPLER;HS(0.5)Y(0.5)PPALGSPGALAGAGVGAAGPLER ;;; 248.9 4.19E-50 2404180000 761460 720569 734261 1048280 998960 653880 916530 713125 755072 1377410 TRUE FALSE FALSE 930844.15 804833.2764 1005894.699 1105544.882 899500.0348 688116.1457 720705.8781 538229.9756 906608.0245 1034047.036 0.900195172 0.778333333 0.972774607 1.069143707 0.869883094 0.665459231 0.696975914 0.520508214 0.876757045 1 19.97987038 -6.116362487 5.017474111 0.719694261 0.927350652 0.256385766 0.138551595 0.270590993 10.06984062 0.045799936 0.046085272 7.65E-07 6.116362487 0.207656391 HS(ph)YPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_A486_30min_R1 4 HSYPPALGSPGALAGAGVGAAGPLER 26 0 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 HS(0.558)Y(0.442)PPALGSPGALAGAGVGAAGPLER;HS(0.993)Y(0.007)PPALGSPGALAGAGVGAAGPLER;HS(0.998)Y(0.002)PPALGSPGALAGAGVGAAGPLER;HS(0.919)Y(0.08)PPALGSPGALAGAGVGAAGPLER ;;; 277.75 6.20E-76 2001940000 936211 1203440 789596 404021 1007058 1109300 1283450 1181070 996454 1232270 TRUE FALSE FALSE 870587.4435 1108075.032 1095348.717 940581.3061 880743.3952 972445.8445 962317.2351 912166.1436 1082827.435 923701.5713 0.942498606 1.199602844 1.185825326 1.018274013 0.953493447 1.052770586 1.041805346 0.987511738 1.172269777 1 19.8170673 -5.288210889 24.17671605 1.029748149 1.118338332 0.145059917 0.084664724 795.1269341 718058.5858 0.023509146 0.034884813 5.15E-06 5.288210889 0.088590183 HSAGS(ph)GAEESNSSSTVQK ddPTM_HeLa_A486_30min_R1 1 HSAGSGAEESNSSSTVQK 18 0 Q8IYL3 Q8IYL3 C1orf174 UPF0688 protein C1orf174 1 0 HS(0.216)AGS(0.784)GAEESNSSSTVQK 207.54 1.36E-25 321090000 168650 165480 91993 26959 161560 166670 183960 188010 135560 166640 TRUE FALSE FALSE 156828.5059 152366.7621 127615.1533 62761.91443 141295.6383 146107.95 137931.2623 145204.2272 147310.4499 124912.2594 1.255509321 1.219790299 1.02163834 0.502447996 1.131159096 1.169684631 1.104225182 1.162449771 1.179311388 1 16.93055555 -5.935338522 24.99999996 1.134176391 0.992075782 0.086576519 0.196178063 155.8620245 60258.91197 0.065886507 0.074708272 1.16E-06 5.935338522 -0.142100609 HSAIS(ph)PK ddPTM_HeLa_A485_30min_R1 1 HSAISPK 7 0 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 0 HSAIS(1)PK 61.765 0.024762 404050000 794630 699680 398280 1371400 697210 704750 1210800 1266900 594700 1747700 TRUE FALSE FALSE 971392.7021 781501.4896 545620.3458 1446316.109 627793.3243 741649.6202 952102.6887 956190.7886 714050.8351 1312030.554 0.740373537 0.595642752 0.415859481 1.102349412 0.478489866 0.565268559 0.725671125 0.728786983 0.544233389 1 20.32336989 -10.4338088 2.945126285 1.00737044 0.655943925 0.244830684 0.181670635 35399293.62 41549473.62 2176400.435 0.044192776 3.68E-11 10.4338088 -0.351426515 HSAS(ph)PVVFTSAR ddPTM_HeLa_A485_30min_R1 5 HSASPVVFTSAR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HS(0.03)AS(0.97)PVVFTSAR;HS(0.006)AS(0.994)PVVFTSAR;HS(0.009)AS(0.991)PVVFTSAR;HS(0.002)AS(0.998)PVVFTSAR;HS(0.233)AS(0.767)PVVFTSAR ;;;; 164.66 1.93E-10 2688400000 1068180 1403110 1203932 1135352 1669560 1277590 1594500 1703450 1294872 1639840 TRUE FALSE FALSE 1305792.956 1567191.509 1649316.547 1197373.405 1503332.744 1344482.637 1253822.049 1285676.217 1554740.933 1231058.067 1.06070785 1.273044344 1.339755281 0.972637633 1.221171271 1.092135841 1.018491396 1.044366835 1.262930624 1 20.23146738 -5.259128005 24.96923196 1.092140258 1.22935667 0.248288532 0.109011201 290.2404307 3135379.741 0.029568786 0.048226102 5.51E-06 5.259128005 0.137216412 HSAS(ph)PVVFTSAR ddPTM_HeLa_A486_30min_R1 5 HSASPVVFTSAR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HS(0.003)AS(0.997)PVVFTSAR;HS(0.009)AS(0.991)PVVFTSAR;HS(0.001)AS(0.999)PVVFTSAR;HS(0.029)AS(0.971)PVVFTSAR;HS(0.251)AS(0.749)PVVFTSAR ;;;; 213.99 3.45E-18 1617410000 1295180 1350620 1011860 417035 1469000 1296280 1459480 1424290 1071770 1485930 TRUE FALSE FALSE 1204394.57 1243591.952 1403679.291 970878.5558 1284744.322 1136358.153 1094302.667 1100010.259 1164671.887 1113843.456 1.081296087 1.116487192 1.26021236 0.871647223 1.153433469 1.02021352 0.982456431 0.987580663 1.04563337 1 20.08711505 -5.253398744 24.99851891 1.01360742 1.149047399 0.416755287 0.077855211 627.294069 1950266.113 0.020704386 0.035052387 5.58E-06 5.253398744 0.135439978 HSCSGS(ph)SPPR ddPTM_HeLa_A485_30min_R1 2 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HS(0.001)CS(0.005)GS(0.566)S(0.429)PPR;HSCS(0.001)GS(0.626)S(0.374)PPR ; 72.006 0.012732 2029670000 76783.2 108189.1 73701.5 78602.2 87472 84403 102107.4 120878.3 96549.2 112322.4 TRUE FALSE FALSE 93863.35794 120840.8741 100966.7518 82896.03915 78762.98055 88822.21057 80291.31985 91232.7074 115925.7388 84322.49282 1.113147332 1.433079954 1.197388128 0.983083355 0.934068454 1.053363196 0.952193385 1.081949837 1.374790225 1 16.3636299 -5.060239523 5.411216624 1.049835091 1.283324251 0.303304938 0.137189204 0.229536553 13.89089732 0.037752417 0.068458913 8.70E-06 5.060239523 0.23348916 HSCSGS(ph)SPPR ddPTM_HeLa_A486_30min_R1 1 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HS(0.01)CS(0.064)GS(0.519)S(0.407)PPR 59.426 0.031133 4982700000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 HSCSGS(ph)SPPRVK ddPTM_HeLa_A485_30min_R1 3 HSCSGSSPPRVK 12 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSCSGS(0.5)S(0.5)PPRVK;HS(0.001)CS(0.009)GS(0.495)S(0.495)PPRVK;HSCS(0.001)GS(0.499)S(0.499)PPRVK ;; 94.09 0.00084009 731560000 122359 242145 173894 129464 396096 333189 512228 1045680 186066 205210 TRUE FALSE FALSE 149577.3374 270461.7514 238224.6269 136536.2905 356659.2915 350634.2608 402786.3033 789225.3404 223407.7395 154054.9236 0.970935131 1.755619003 1.546361657 0.886283199 2.315143736 2.276034109 2.614563 5.123012767 1.450182404 1 17.23308527 -6.113611483 1.835228668 2.822622176 1.34800663 0.189835551 1.071568982 0.474421956 3.175177203 0.409449286 0.415780558 7.70E-07 6.113611483 -1.474615546 HSCSGS(ph)SPPRVK ddPTM_HeLa_A486_30min_R1 2 HSCSGSSPPRVK 12 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSCSGS(0.5)S(0.5)PPRVK;HSCSGS(0.5)S(0.5)PPRVK ; 101.32 0.00055694 109112000 91492 58985 83432 27000 265100 76584 167673 197263 55747 85915 TRUE FALSE FALSE 85078.88327 54310.81378 115739.1048 62857.3645 231848.686 67135.84473 125719.4419 152350.5211 60579.19485 64401.32479 1.321073496 0.84331827 1.797154098 0.976025955 3.600060819 1.042460616 1.95212509 2.365642658 0.940651377 1 15.97480275 -4.773513991 24.00522843 1.784238646 1.082195965 0.084761451 0.794218547 260.0343488 516972.6714 0.199222671 0.420311139 1.68E-05 4.773513991 -0.702042681 HSCSGSS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HS(0.002)CS(0.014)GS(0.368)S(0.617)PPR;HSCSGS(0.018)S(0.981)PPR;HS(0.002)CS(0.008)GS(0.043)S(0.947)PPR;HSCSGS(0.002)S(0.998)PPR ;;; 200.76 9.21E-14 17417880000 679035 989719 659120 788543 781796 765691 968347 1164615 881774 1114920 TRUE FALSE FALSE 830083.9931 1105458.028 902955.9163 831619.1074 703957.6452 805781.3968 761451.7528 878991.3452 1058737.954 836990.9626 0.991747857 1.320752645 1.078812026 0.993581944 0.841057642 0.962712183 0.909749074 1.05018021 1.264933555 1 19.67485252 -2.622657007 7.347344816 1.038817572 1.232954149 0 0.14130563 0 0 0.034559519 0 0.002384202 2.622657007 0.194136578 HSCSGSS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HS(0.001)CS(0.007)GS(0.034)S(0.957)PPR 74.533 0.011124 3814900000 178060 94995 159050 26789 132550 215030 160880 134320 199020 173910 TRUE FALSE FALSE 165578.9135 87467.25023 220638.4195 62366.14584 115924.343 188501.7849 120626.1224 103738.2682 216271.2138 130361.804 1.270148988 0.670957654 1.692508179 0.478408122 0.889250834 1.445989385 0.925317989 0.795771959 1.659007525 1 16.9921617 HSCSPMGDGDPEAMEES(ph)PR ddPTM_HeLa_A485_30min_R1 2 HSCSPMGDGDPEAMEESPR 19 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 HSCSPMGDGDPEAMEES(1)PR;HSCSPMGDGDPEAMEES(1)PR ; 187.16 2.15E-18 2188270000 582480 871770 834090 748930 1237420 803080 1038400 1097270 870710 950630 TRUE FALSE FALSE 712050.6665 973715.9181 1142654.6 789842.1495 1114218.12 845128.027 816537.3571 828162.812 1045453.51 713655.436 0.997751338 1.364406223 1.60112926 1.106755599 1.561283028 1.184224185 1.144161896 1.160451907 1.464927551 1 19.44486816 HSCSPMGDGDPEAMEES(ph)PR ddPTM_HeLa_A486_30min_R1 2 HSCSPMGDGDPEAMEESPR 19 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 HSCSPMGDGDPEAMEES(1)PR;HSCSPMGDGDPEAMEES(1)PR ; 299.55 2.62E-79 2568200000 1550590 1689150 1457590 335860 2011900 1474730 1827820 1810870 1621360 1616160 TRUE FALSE FALSE 1441901.648 1555295.602 2022007.884 781899.0534 1759548.742 1292792.807 1370480.103 1398574.432 1761900.79 1211463.017 1.19021516 1.283815998 1.669062824 0.645417188 1.452416391 1.067133531 1.131260372 1.154450786 1.454357885 1 20.20831893 -5.209231995 24.99999903 1.146679132 1.371309341 0.179673396 0.244264927 644.738728 308737.9698 0.063397638 0.109807808 6.18E-06 5.209231995 0.224630209 HSDLFSSSS(ph)PWDKGTKPR ddPTM_HeLa_A486_30min_R1 1 HSDLFSSSSPWDKGTKPR 18 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 HSDLFSS(0.016)S(0.192)S(0.792)PWDKGTKPR 124.69 5.71E-06 415740000 225230 132040 77964 41173 178600 169320 246580 239420 118280 234910 TRUE FALSE FALSE 209442.5401 121576.6695 108153.7487 95852.82477 156198.3226 148431.0199 184883.0759 184909.2925 128532.6056 176087.007 1.18942643 0.690435209 0.614206298 0.544349219 0.887051948 0.842941353 1.04995297 1.050101854 0.729938045 1 17.42592893 -6.216488185 2.421453777 0.9535158 0.746907403 0.151166837 0.18588866 0.51602697 5.953367733 0.071973389 0.068540368 6.07E-07 6.216488185 -0.206608396 HSDPTLPGTDSLPCS(ph)PPVSNSYTQADPMAPR ddPTM_HeLa_A485_30min_R1 1 HSDPTLPGTDSLPCSPPVSNSYTQADPMAPR 31 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 HSDPTLPGT(0.001)DS(0.006)LPCS(0.991)PPVS(0.001)NSYTQADPMAPR 121.33 1.09E-05 170630000 62664 53982 74984 61511 86214 47050 67823 51483 55426 70323 TRUE FALSE FALSE 76603.39061 60294.72532 102723.7019 64871.19018 77630.23144 49513.46525 53332.06199 38856.71353 66549.4898 52792.7703 1.451020475 1.142101939 1.945791088 1.228789279 1.470470881 0.937883444 1.010215256 0.736023386 1.26057961 1 15.68805275 -6.260585177 24.96161845 0.97377147 1.446177975 0.496596669 0.230658633 62.90475519 1838227.423 0.075733565 0.071592069 5.49E-07 6.260585177 0.472406505 HSDSGTSEASLS(ph)PPS(ph)SPPSRPR ddPTM_HeLa_A485_30min_R1 1 HSDSGTSEASLSPPSSPPSRPR 22 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 2 0 HSDS(0.002)GT(0.002)S(0.002)EAS(0.019)LS(0.959)PPS(0.547)S(0.466)PPS(0.003)RPR 71.427 0.0073074 617660000 66640 107030 79186 77071 110730 72566 98510 105230 96043 103570 TRUE FALSE FALSE 81463.83809 119546.2275 108480.1966 81281.19358 99705.3324 76365.44355 77462.53375 79422.17751 115317.9491 77751.90506 1.047740734 1.537534384 1.3952095 1.045391666 1.282352276 0.982168135 0.996278274 1.021482077 1.483152716 1 16.2465904 -5.258403648 24.93703578 1.11311484 1.347898833 0.208129281 0.187200417 367.3783475 3017814.528 0.050556775 0.083099709 5.52E-06 5.258403648 0.234783993 HSDSGTSEASLS(ph)PPSS(ph)PPSRPR ddPTM_HeLa_A485_30min_R1 1 HSDSGTSEASLSPPSSPPSRPR 22 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 2 0 HSDSGTSEAS(0.021)LS(0.978)PPS(0.173)S(0.826)PPS(0.001)RPR 129.57 2.14E-06 531600000 121640 162610 144800 110360 210090 129300 175860 211930 144820 187750 TRUE FALSE FALSE 148698.3983 181625.825 198367.5456 116388.6874 189172.7019 136069.9481 138286.0744 159953.8352 173884.0456 140947.3803 1.054992282 1.288607313 1.407387248 0.825759848 1.342151245 0.965395368 0.981118443 1.134847876 1.233680578 1 17.10479714 -5.239341063 24.99911938 1.078015503 1.254156748 0.212681882 0.159170936 1304.705335 1475969.83 0.042085011 0.072826203 5.76E-06 5.239341063 0.176141245 HSDSGTSEASLS(ph)PPSS(ph)PPSRPR ddPTM_HeLa_A486_30min_R1 1 HSDSGTSEASLSPPSSPPSRPR 22 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 2 0 HSDSGTSEAS(0.011)LS(0.987)PPS(0.271)S(0.73)PPSRPR 122.84 4.26E-06 505000000 123610 137600 94901 22087 131850 113230 147220 154550 119620 112890 TRUE FALSE FALSE 114945.5773 126696.0749 131649.2087 51419.65222 115312.1435 99260.83384 110383.9989 119362.3388 129988.7579 84621.60921 1.358347807 1.497207109 1.55573984 0.607642099 1.362679635 1.172996292 1.304442209 1.410542058 1.536117773 1 16.3687385 HSEEAEFTPPLKCS(ph)PK ddPTM_HeLa_A485_30min_R1 2 HSEEAEFTPPLKCSPK 16 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HSEEAEFT(0.001)PPLKCS(0.999)PK;HSEEAEFTPPLKCS(1)PK ; 97.836 0.00037616 688890000 956930 652870 467550 1950170 1275610 811660 1615930 1535730 743830 2557030 TRUE FALSE FALSE 1169795.777 729217.4673 640516.2014 2056702.849 1148605.789 854157.2625 1270673.355 1159089.81 893109.8582 1919609.48 0.609392582 0.37987803 0.333670055 1.071417323 0.598353885 0.444964078 0.661943676 0.603815423 0.465256016 1 20.87238141 -11.17966499 2.273167566 2.084799275 0.576473988 0.299236654 0.195410318 14733846.77 3278781.846 82191083.06 0.050261689 6.61E-12 11.17966499 -1.508325287 HSEEAEFTPPLKCS(ph)PK ddPTM_HeLa_A486_30min_R1 4 HSEEAEFTPPLKCSPK 16 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HSEEAEFT(0.016)PPLKCS(0.984)PK;HSEEAEFTPPLKCS(1)PK;HSEEAEFT(0.003)PPLKCS(0.997)PK;HSEEAEFT(0.017)PPLKCS(0.983)PK ;;; 101.42 0.0002601 1223070000 2660980 2566620 1098313 2468250 2378650 3938150 5398700 4826920 2230150 6062760 TRUE FALSE FALSE 2474459.043 2363231.684 1523609.207 5746210.738 2080297.537 3452301.093 4047888.158 3727935.687 2423461.198 4544605.434 0.544482701 0.52000811 0.335256653 1.264402559 0.457750968 0.759648146 0.890701782 0.820299087 0.533261079 1 22.11572361 -5.16332322 20.88417786 0.796607085 0.471921264 0.347166195 0.219418811 13.7021435 2911.564314 0.056966631 0.098669544 6.87E-06 5.16332322 -0.324685822 HSEKS(ph)PPSTENKHEAK ddPTM_HeLa_A485_30min_R1 1 HSEKSPPSTENKHEAK 16 2 H3BQL3;Q6PH81 H3BQL3 C16orf87 UPF0547 protein C16orf87 1 0 HS(0.219)EKS(0.775)PPS(0.005)T(0.001)ENKHEAK 79.942 0.001602 118000000 137210 108230 68454 221650 143670 134310 237410 219580 117990 344310 TRUE FALSE FALSE 167731.8911 120886.557 93777.98321 233758.1783 129365.7103 141342.2639 186685.414 165727.6607 141669.5107 258479.8536 0.648916691 0.467682705 0.362805774 0.904357438 0.500486628 0.546821201 0.722243577 0.641162777 0.548087245 1 17.97969231 -14 0.233036671 3.215832614 0.549639032 0.425683986 0.141600661 159.9959185 1.600979972 167.4836664 0.239576352 1.00E-14 14 -2.666193582 HSEKS(ph)PPSTENKHEAK ddPTM_HeLa_A486_30min_R1 1 HSEKSPPSTENKHEAK 16 2 H3BQL3;Q6PH81 H3BQL3 C16orf87 UPF0547 protein C16orf87 1 0 HSEKS(1)PPSTENKHEAK 158.65 3.79E-09 66348000 161500 110790 40241 89024 91659 182790 258170 226220 101260 283490 TRUE FALSE FALSE 150179.684 102010.5969 55823.39289 207252.371 80162.27353 160239.2283 193573.1354 174714.6443 110037.2983 212502.2588 0.706720412 0.480044765 0.262695527 0.975294908 0.377230219 0.754058941 0.910922719 0.822177822 0.517817076 1 17.69711865 -6.491961574 19.19002841 0.80285085 0.562763163 0.244507148 0.213161118 59.93333622 37199.98597 0.073732834 0.064811853 3.22E-07 6.491961574 -0.240087687 HSENET(ph)SDREDGLPK ddPTM_HeLa_A486_30min_R1 1 HSENETSDREDGLPK 15 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 1 0 HS(0.005)ENET(0.497)S(0.497)DREDGLPK 68.129 0.0050869 0 64121 50618 44630 30996 60624 67558 80406 77105 48249 92175 TRUE FALSE FALSE 59626.44902 46606.84533 61911.93123 72160.25445 53019.97262 59223.38084 60287.56835 59549.87469 52431.26217 69093.78004 0.862978534 0.674544732 0.896056507 1.044381338 0.767362454 0.857144895 0.872546969 0.861870268 0.758841999 1 16.07626822 -11.34875247 2.392908999 2.052767128 0.84591442 0.202037863 0.09295382 9350125.275 2595452.444 52261791.79 0.023755087 4.48E-12 11.34875247 -1.206852708 HSGNITFDEIVNIAR ddPTM_HeLa_A485_30min_R1 1 HSGNITFDEIVNIAR 15 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 0 149.3 2.05E-07 104020000 43533 58647 54816 48779 70604 49804 71272 76940 44479 63224 FALSE FALSE TRUE 53216.76566 65505.25649 75094.71948 51443.67326 63574.41785 52411.66043 56044.15496 58070.34436 53405.52731 47463.42035 1.121216408 1.380120859 1.582159881 1.083859378 1.339440297 1.104253761 1.180786268 1.223475762 1.1251934 1 15.53452845 -5.840374321 1.356787059 1.146084904 1.341564681 0.251596596 0.142502796 0.617345672 2.377801834 0.056700895 0.073955841 1.44E-06 5.840374321 0.195479776 HSGRDDTSRYDERPGPS(ph)PLPHR ddPTM_HeLa_A485_30min_R1 2 HSGRDDTSRYDERPGPSPLPHR 22 3 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 HS(0.002)GRDDT(0.007)S(0.007)RYDERPGPS(0.983)PLPHR;HSGRDDT(0.001)S(0.001)RYDERPGPS(0.997)PLPHR ; 81.839 0.0013389 432270000 25926 177375 56908 15467.1 95871 165853 225447 928610 50788 37761 TRUE FALSE FALSE 31693.14926 198117.4633 77960.63734 16312.02851 86325.74662 174536.8066 177278.4067 700866.9415 60980.68574 28347.87764 1.118007833 6.988793511 2.750140181 0.575423272 3.045227855 6.156962043 6.253674754 24.72378886 2.151155248 1 14.79095311 -6.703676413 2.670908829 10 3.13628326 0.14176213 6.291896612 0.459341539 6.677429671 2.721518673 1.904610925 1.98E-07 6.703676413 -6.86371674 HSGSRS(ph)DEDRYQNGAER ddPTM_HeLa_A485_30min_R1 1 HSGSRSDEDRYQNGAER 17 2 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 HS(0.005)GS(0.014)RS(0.981)DEDRYQNGAER 133.41 4.22E-06 890650000 58191 98446 121060 69129 193000 98877 157600 192430 106510 128670 TRUE FALSE FALSE 71135.38719 109958.4033 165845.1317 72905.34223 173784.2423 104054.0468 123927.4725 145236.2408 127885.58 96594.937 0.73642977 1.138345412 1.716913297 0.754753246 1.799103015 1.077220505 1.282960333 1.503559558 1.323936678 1 16.55965995 -4.354788211 3.80875675 1.319313061 0.724671049 0.242897262 0.301596659 0.291340637 6.900783171 0.070067087 0.389811914 4.42E-05 4.354788211 -0.594642012 HSGSRS(ph)DEDRYQNGAER ddPTM_HeLa_A486_30min_R1 2 HSGSRSDEDRYQNGAER 17 2 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 HS(0.029)GS(0.014)RS(0.957)DEDRYQNGAER;HS(0.008)GS(0.066)RS(0.926)DEDRYQNGAER ; 184.93 4.89E-18 1184620000 166866 197486 247122 83709 383310 238307 303070 340580 196090 204727 TRUE FALSE FALSE 155169.5551 181836.4901 342814.2566 194878.7824 335231.6856 208907.1053 227238.6805 263037.3688 213087.2391 153462.0267 1.011126716 1.184895665 2.233870255 1.269882763 2.184460175 1.361295102 1.480748596 1.714022515 1.388533983 1 17.22752219 -8.051982038 6.466696547 1.000024104 1.567322465 0.163914329 0.379571547 0.775177061 92.49052682 0.359108745 0.093088712 8.87E-09 8.051982038 0.567298361 HSHS(ph)HS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 4 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 HS(0.114)HS(0.887)HS(0.996)PMS(0.003)T(0.001)R;HS(0.209)HS(0.806)HS(0.983)PMS(0.001)TR;HS(0.417)HS(0.583)HS(0.966)PMS(0.025)T(0.008)R;HS(0.028)HS(0.972)HS(0.968)PMS(0.023)T(0.009)R ;;; 81.128 0.0030601 1316340000 488842 706830 763960 446166 875930 662920 670440 677030 657900 670380 TRUE FALSE FALSE 597583.2164 789487.6199 1046580.595 470538.9188 788719.3336 697629.4661 527195.017 510987.331 789934.4954 503266.6034 1.187408845 1.568726426 2.079574897 0.934969489 1.567199827 1.386202584 1.047546198 1.015341228 1.569614375 1 18.94096334 -6.160611022 1.03093161 1.167501152 1.532728167 0.156342218 0.318106654 0.957079707 2.15833241 0.171243128 0.171478739 6.91E-07 6.160611022 0.365227015 HSHS(ph)HS(ph)PMSTR ddPTM_HeLa_A486_30min_R1 2 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 HS(0.115)HS(0.89)HS(0.987)PMS(0.006)T(0.002)R;HS(0.203)HS(0.84)HS(0.954)PMS(0.002)T(0.002)R ; 61.649 0.012673 602760000 179310 169627 193127 28397 237030 205960 180549 156127 154166 120740 TRUE FALSE FALSE 166741.295 156185.1387 267910.9465 66109.6511 207299.4872 180550.7492 135373.7305 120580.2903 167529.233 90505.91811 1.842324772 1.725689789 2.960148376 0.730445616 2.290452288 1.994905449 1.495744514 1.332291775 1.851030701 1 16.46572451 -8.684494088 0.236797174 0.708811021 2.087120077 0.194291311 0.543726267 9.408559084 1.101535935 3.79261092 1.267606241 2.07E-09 8.684494088 1.378309056 HSHSHS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 4 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 HSHS(0.007)HS(0.993)PMSTR;HSHSHS(0.989)PMS(0.005)T(0.005)R;HSHS(0.01)HS(0.99)PMSTR;HSHS(0.036)HS(0.964)PMSTR ;;; 93.348 0.0017165 681786000 187734 349250 246674 96361 204342 214365 216321 211771 252900 177423 TRUE FALSE FALSE 229494.7806 390091.7494 337928.9776 101624.9574 183996.993 225588.8199 170102.2512 159833.8302 303654.7103 133194.7113 1.7230022 2.928733022 2.537105071 0.762980425 1.381413655 1.693677006 1.277094634 1.200001326 2.279780535 1 17.02317727 -5.241802065 24.75724958 1.389042886 2.44952557 0.494924957 0.473602988 578.218474 728973.1391 0.124862087 0.21585222 5.73E-06 5.241802065 1.060482683 HSHSHS(ph)PMSTR ddPTM_HeLa_A486_30min_R1 2 HSHSHSPMSTR 11 0 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 HSHS(0.015)HS(0.985)PMSTR;HSHS(0.172)HS(0.828)PMSTR ; 84.173 0.0076888 119344000 27743.6 18640.6 34084 3368.36 16802.5 29287.6 16424.1 13585.6 38663 7988.7 TRUE FALSE FALSE 25798.91691 17163.45097 47282.2376 7841.712307 14694.97377 25674.39369 12314.61646 10492.45545 42014.33997 5988.277522 4.308236686 2.86617494 7.895799322 1.309510503 2.453956704 4.287442189 2.056453866 1.752165863 7.01609767 1 12.54792537 -5.298388007 24.99913535 2.882371077 4.807687071 0.194787166 2.019345094 1000.027674 676608.3606 0.553211738 0.820568628 5.03E-06 5.298388007 1.925315994 HSISHS(ph)PNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR ddPTM_HeLa_A486_30min_R1 1 HSISHSPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR 41 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 HS(0.012)IS(0.074)HS(0.499)PNS(0.138)NS(0.138)NGS(0.138)FLAPETEPIVPELCIDHLWTETITNIR 78.706 0.00048753 35155000 2638.4 2621.6 3427.1 1168.5 5839.5 2501.3 3696.5 3142.6 2817.2 1885.2 TRUE FALSE FALSE 2453.461785 2413.854868 4754.164901 2720.327053 5107.055459 2192.715037 2771.596602 2427.098582 3061.397164 1413.133649 1.73618524 1.708157519 3.364271244 1.925031687 3.613993242 1.551668548 1.961312437 1.717529395 2.166388979 1 10.4646822 -8.201096094 0.54729943 1.000491907 2.371469021 0.24203749 0.667658853 1.721995689 1.145681387 0.796659765 0.329962347 6.29E-09 8.201096094 1.370977114 HSISHSPNS(ph)NSNGSFLAPETEPIVPELCIDHLWTETITNIR ddPTM_HeLa_A486_30min_R1 1 HSISHSPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR 41 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 HS(0.181)IS(0.181)HS(0.181)PNS(0.205)NS(0.205)NGS(0.047)FLAPETEPIVPELCIDHLWTETITNIR 48.909 0.0072718 44526000 3319.8 4023.1 5075 1103.9 6652.7 3075.1 4892.3 3889.4 6228.1 1479.1 TRUE FALSE FALSE 3087.099163 3704.294904 7040.175913 2569.934988 5818.256332 2695.725427 3668.194795 3003.868525 6767.956723 1108.723733 2.784371862 3.341044117 6.349801764 2.31792187 5.247706133 2.43137704 3.308484058 2.709302991 6.104276948 1 10.11468421 HSLDS(ph)DEEEDDDDGGSSK ddPTM_HeLa_A485_30min_R1 5 HSLDSDEEEDDDDGGSSK 18 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.209)LDS(0.791)DEEEDDDDGGSSK;HS(0.016)LDS(0.984)DEEEDDDDGGSSK;HS(0.135)LDS(0.865)DEEEDDDDGGSSK;HSLDS(1)DEEEDDDDGGSSK;HS(0.013)LDS(0.987)DEEEDDDDGGSSK ;;;; 310.92 2.92E-89 3832670000 1454070 1189387 1120813 3080650 1714400 1064841 2104598 1420049 1451847 3854440 TRUE FALSE FALSE 1777522.855 1328475.463 1535448.37 3248938.109 1543708.316 1120594.428 1654933.444 1071779.756 1743219.376 2893599.044 0.614294803 0.459108343 0.530636189 1.122801763 0.533490747 0.387266657 0.571929082 0.370396776 0.602439851 1 21.4644336 -8.051338645 22.12597069 1.000000002 0.573370103 0.290169134 0.198961559 5361.456365 2310682.4 0.202136321 0.052191374 8.89E-09 8.051338645 -0.426629899 HSLDS(ph)DEEEDDDDGGSSK ddPTM_HeLa_A486_30min_R1 4 HSLDSDEEEDDDDGGSSK 18 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.008)LDS(0.992)DEEEDDDDGGSSK;HSLDS(1)DEEEDDDDGGSSK;HS(0.001)LDS(0.999)DEEEDDDDGGSSK;HS(0.001)LDS(0.999)DEEEDDDDGGSSK ;;; 402.55 7.40E-163 3614250000 1775020 2300290 1241280 1053670 1968490 2534360 3068900 2817140 2097660 3289160 TRUE FALSE FALSE 1650600.264 2118006.643 1721936.859 2452997.01 1721583.629 2221696.431 2301028.76 2175738.72 2279486.858 2465532.927 0.669469974 0.85904618 0.698403513 0.994915534 0.698260246 0.90110191 0.933278455 0.882461838 0.924541235 1 21.23346809 -1.17220983 0.138337822 1.032725001 1.47E-18 0.44127179 0.087796053 69.72959834 0.674460203 0.37508543 14.08947102 0.067265159 1.17220983 -1.032725001 HSLDS(ph)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_A485_30min_R1 4 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.18)LDS(0.817)DEEEDDDDGGS(0.001)S(0.001)KYDILASEDVEGQEAATLPSEGGVR;HS(0.175)LDS(0.468)DEEEDDDDGGS(0.111)S(0.111)KY(0.104)DILAS(0.031)EDVEGQEAATLPSEGGVR;HS(0.18)LDS(0.819)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR;HS(0.029)LDS(0.971)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ;;; 219.34 1.16E-40 4749305000 441386 514889 376476 898277 799511 502939 1075176 1001855 527151 1191780 TRUE FALSE FALSE 539570.7929 575100.7896 515750.1389 947347.598 719908.8776 529272.1083 845455.8642 756148.4904 632945.3704 894691.1791 0.603080488 0.642792511 0.576456045 1.058854295 0.804645105 0.591569606 0.944969487 0.845150269 0.707445636 1 19.77103027 -5.218518757 24.96875127 0.835176685 0.610977859 0.42094344 0.129695987 496.3034042 288720.1054 0.035186565 0.060944499 6.05E-06 5.218518757 -0.224198825 HSLDS(ph)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_A486_30min_R1 1 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.12)LDS(0.492)DEEEDDDDGGS(0.12)S(0.12)KY(0.114)DILAS(0.033)EDVEGQEAATLPSEGGVR 51.774 0.0092823 1634900000 20891 31758 19925 28387 38404 35386 49300 52902 28554 52194 TRUE FALSE FALSE 19426.64878 29241.38042 27640.49361 66086.3706 33587.01222 31020.4351 36964.61856 40857.36944 31029.08371 39124.28267 0.496536868 0.747397228 0.706479243 1.689139483 0.858469726 0.792869108 0.944799905 1.04429696 0.793090163 1 15.25577668 -5.028984277 24.99906737 1.015540397 0.648209417 0.317540485 0.248271823 835.3802256 720519.0522 0.068568755 0.119049279 9.35E-06 5.028984277 -0.36733098 HSLDSDEEEDDDDGGS(ph)SKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_A486_30min_R1 1 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.19)LDS(0.172)DEEEDDDDGGS(0.232)S(0.232)KY(0.172)DILAS(0.002)EDVEGQEAATLPSEGGVR 98.179 1.33E-05 3085900000 50730 56127 32509 46299 74609 72934 94961 100910 55320 115110 TRUE FALSE FALSE 47174.08897 51679.29211 45097.35542 107786.4118 65250.84352 63936.14462 71200.7534 77934.99585 60115.18214 86285.70676 0.546719622 0.598932246 0.522651516 1.249180378 0.756218451 0.740981873 0.825174366 0.903220229 0.696699192 1 16.39683398 HSLGLTVS(ph)PCR ddPTM_HeLa_A485_30min_R1 1 HSLGLTVSPCR 11 0 G5E9D9;A0A0C4DFZ6;Q9H972-2;Q9H972 G5E9D9 C14orf93 Uncharacterized protein C14orf93 1 0 HSLGLT(0.01)VS(0.99)PCR 62.408 0.011164 0 26157 28444 27138 23662 42780 31120 33075 36838 24727 33307 TRUE FALSE FALSE 31975.53441 31770.27837 37177.47551 24954.59514 38520.67299 32749.39508 26008.25605 27803.42274 29689.48209 25004.17787 1.278807669 1.270598799 1.486850546 0.998017022 1.540569468 1.309756923 1.040156417 1.111951086 1.187380855 1 14.60988155 -6.75143332 24.17301946 1.094201351 1.315901755 0.380171266 0.143181039 147.1301774 355443.2209 0.053204096 0.040677465 1.77E-07 6.75143332 0.221700403 HSLLLS(ph)SSPNRIPSSR ddPTM_HeLa_A486_30min_R1 1 HSLLLSSSPNRIPSSR 16 1 G1UD79;Q7Z309-4;Q7Z309-3 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 0 HS(0.017)LLLS(0.381)S(0.301)S(0.301)PNRIPSSR 54.658 0.019207 431560000 140600 154790 108570 98178 144010 164060 212350 216840 136870 241580 TRUE FALSE FALSE 130744.6661 142523.8767 150611.2116 228563.3456 125946.923 143819.9452 159217.784 167470.2656 148734.0018 181086.7956 0.721999998 0.787047317 0.83170731 1.26217566 0.695505835 0.794204485 0.879234643 0.92480661 0.821340956 1 17.46632183 -1.000028431 0.023413129 1.525034729 5.44E-09 0.080653615 0.149334009 7685.976899 13.87911031 318.4687488 635.9801118 0.099993454 1.000028431 -1.525034724 HSLLLSS(ph)SPNRIPSSR ddPTM_HeLa_A486_30min_R1 1 HSLLLSSSPNRIPSSR 16 1 G1UD79;Q7Z309-4;Q7Z309-3 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 0 HS(0.001)LLLS(0.147)S(0.681)S(0.172)PNRIPSSR 62.002 0.010967 478050000 145380 125400 79625 130940 134820 188240 212360 196140 103630 290860 TRUE FALSE FALSE 135189.6127 115462.8473 110457.9324 304834.9373 117909.6185 165016.8627 159225.2819 151483.2037 112612.7318 218026.7628 0.620059717 0.529581074 0.506625567 1.398153756 0.540803418 0.756865169 0.730301546 0.694791785 0.516508755 1 17.73414571 HSLS(ph)GSSPGMK ddPTM_HeLa_A485_30min_R1 1 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLS(0.364)GS(0.3)S(0.336)PGMK 146.16 8.86E-07 269780000 786470 760480 605790 1024700 1046900 764410 1190800 957260 781130 1562600 TRUE FALSE FALSE 961417.5382 849411.5207 829896.93 1080676.766 942666.9601 804433.3256 936375.8521 722490.4841 937895.6261 1173072.578 0.819572085 0.724091192 0.707455741 0.921236066 0.803587926 0.685748982 0.798224995 0.615895809 0.799520545 1 20.16186084 -8.028636631 24.19231647 1.000000004 0.758849992 0.449235102 0.079521999 2098.484159 1772803.976 0.077850411 0.02010089 9.36E-09 8.028636631 -0.241150012 HSLS(ph)LDDIR ddPTM_HeLa_A485_30min_R1 2 HSLSLDDIR 9 0 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 0 HSLS(1)LDDIR;HS(0.015)LS(0.985)LDDIR ; 131.17 0.0001706 182965000 129921 151439 169848 135894 195955 171501 211580 199352 145884 209990 TRUE FALSE FALSE 158821.4782 169148.4737 232681.8432 143317.5451 176445.0322 180480.5272 166374.2046 150460.6094 175161.5807 157643.3576 1.007473329 1.072981928 1.476001569 0.909125175 1.119267154 1.144866044 1.055383539 0.954436722 1.111125666 1 17.26630486 -6.909134996 4.811726764 1.021031898 1.125352876 0.093784974 0.141376628 0.521479618 20.75705982 0.061581953 0.040682606 1.23E-07 6.909134996 0.104320978 HSLS(ph)LDDIR ddPTM_HeLa_A486_30min_R1 2 HSLSLDDIR 9 0 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 0 HSLS(1)LDDIR;HSLS(1)LDDIR ; 143.97 5.63E-05 64676000 133632 141652 132376 55688 179752 140428 167348 165969 141534 179299 TRUE FALSE FALSE 124265.0869 130426.9796 183635.5324 129644.4783 157205.828 123103.4211 125475.7604 128181.4818 153802.2811 134401.3634 0.924582041 0.970428992 1.366321946 0.964606869 1.169674355 0.915938783 0.933589937 0.953721589 1.144350602 1 17.03618825 -6.268480401 24.87048666 0.983132146 1.082677801 0.102362991 0.131782964 1216.023596 4295258.067 0.046443405 0.041784442 5.39E-07 6.268480401 0.099545656 HSLS(ph)PVPWEEDSFLQVK ddPTM_HeLa_A485_30min_R1 1 HSLSPVPWEEDSFLQVK 17 0 P10073 P10073 ZSCAN22 Zinc finger and SCAN domain-containing protein 22 1 0 HS(0.017)LS(0.983)PVPWEEDSFLQVK 196.31 4.17E-19 34769000 40941 43538 32876 45842 57975 48005 67146 67783 40471 70875 TRUE FALSE FALSE 50048.18421 48629.39037 45038.20048 48346.23238 52202.80544 50518.46757 52799.70857 51159.11297 48593.15848 53207.16686 0.940628625 0.91396316 0.846468684 0.908641359 0.981123569 0.949467347 0.992342041 0.961507932 0.913282201 1 15.69933297 -5.685320367 6.007526716 0.96472648 0.898203587 0.49567794 0.031521001 0.178745138 10.76275242 0.009550464 0.0123075 2.06E-06 5.685320367 -0.066522893 HSLS(ph)PVPWEEDSFLQVK ddPTM_HeLa_A486_30min_R1 2 HSLSPVPWEEDSFLQVK 17 0 P10073 P10073 ZSCAN22 Zinc finger and SCAN domain-containing protein 22 1 0 HS(0.132)LS(0.868)PVPWEEDSFLQVK;HS(0.079)LS(0.921)PVPWEEDSFLQVK ; 182.82 9.42E-18 100218000 196737 180395 126292 75288 203187 199768 240390 218870 173841 258830 TRUE FALSE FALSE 182946.7523 166099.8432 175195.6446 175274.2688 177701.3918 175122.6553 180241.8794 169038.0789 188909.6779 194017.2833 0.94294049 0.856108489 0.902989886 0.90339513 0.915904959 0.902613686 0.928999089 0.871252684 0.973674482 1 17.56582565 -7.9066053 5.197658495 0.999117377 0.902969503 0.668572876 0.023896834 0.102350221 4.091598415 0.021630007 0.005640423 1.24E-08 7.9066053 -0.096147874 HSLSGS(ph)SPGMK ddPTM_HeLa_A485_30min_R1 1 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLS(0.01)GS(0.495)S(0.495)PGMK 180.24 1.98E-09 139290000 150100 141860 108700 195040 198940 135560 224860 181650 139220 277780 TRUE FALSE FALSE 183489.2272 158449.293 148912.6534 205694.5413 179132.8351 142657.712 176816.8241 137100.0527 167160.177 208534.5582 0.879898415 0.759822709 0.714091011 0.986381073 0.859007911 0.684096263 0.847901785 0.65744524 0.801594606 1 17.66992696 HSLSGS(ph)SPGMK ddPTM_HeLa_A486_30min_R1 3 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLS(0.016)GS(0.492)S(0.492)PGMK;HSLS(0.062)GS(0.469)S(0.469)PGMK;HSLS(0.003)GS(0.672)S(0.326)PGMK ;; 210.95 1.43E-14 700970000 1177590 1192660 637640 256940 1022180 1225960 1469880 1398090 1007800 1400020 TRUE FALSE FALSE 1095047.022 1098149.278 884551.2846 598169.305 893968.6529 1074713.52 1102100.477 1079775.427 1095156.915 1049445.879 1.043452591 1.046408681 0.842874608 0.569985853 0.851848266 1.024077126 1.050173714 1.028900535 1.043557307 1 20.00119634 -6.271620863 9.762778616 1.032536918 0.862358313 0.287847388 0.124183617 0.374061336 330.24726 0.048815533 0.044630624 5.35E-07 6.271620863 -0.170178605 HSLSGSS(ph)PGMK ddPTM_HeLa_A485_30min_R1 8 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLS(0.001)GS(0.077)S(0.923)PGMK;HSLSGS(0.017)S(0.983)PGMK;HSLSGS(0.057)S(0.942)PGMK;HSLS(0.002)GS(0.012)S(0.986)PGMK;HSLS(0.006)GS(0.019)S(0.974)PGMK;HSLSGS(0.006)S(0.994)PGMK;HSLSGS(0.008)S(0.992)PGMK;HSLSGS(0.001)S(0.999)PGMK ;;;;;;; 232.78 6.51E-19 4814320000 5610270 5511330 4326020 7541710 7601520 5189790 8386740 6827230 5546430 10700170 TRUE FALSE FALSE 6858255.206 6155832.101 5926394.819 7953694.521 6844685.978 5461519.379 6594844.486 5152841.138 6659547.626 8032814.541 0.853779852 0.766335644 0.737773141 0.990150399 0.852090627 0.679901092 0.820988018 0.641473933 0.829042871 1 22.93747414 -6.138690673 18.97193016 0.77267693 0.838601485 0.023129499 0.110354308 8.575545731 1289.331972 0.03550657 0.03550672 7.27E-07 6.138690673 0.065924555 HSLSGSS(ph)PGMK ddPTM_HeLa_A486_30min_R1 6 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLSGS(0.006)S(0.994)PGMK;HSLSGS(0.03)S(0.97)PGMK;HSLSGS(0.001)S(0.999)PGMK;HSLSGS(0.001)S(0.998)PGMK;HSLSGS(0.02)S(0.98)PGMK;HSLSGS(0.001)S(0.999)PGMK ;;;;; 249.98 1.73E-22 3981180000 5029590 4613760 2395640 857855 4132740 4959360 5862210 5471180 3860210 5387250 TRUE FALSE FALSE 4677041.714 4248148.855 3323295.965 1997129.794 3614373.213 4347524.586 4395423.054 4225511.749 4194816.111 4038247.535 1.158185989 1.051978319 0.822954991 0.494553585 0.895035082 1.076586947 1.088448149 1.046372644 1.038771416 1 21.94529792 -6.219655584 6.340670561 1.055369214 0.867752242 0.202163648 0.162802145 0.365027961 40.914713 0.060744794 0.060047294 6.03E-07 6.219655584 -0.187616972 HSLSGSS(ph)PGMKDIPR ddPTM_HeLa_A485_30min_R1 4 HSLSGSSPGMKDIPR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLSGS(0.039)S(0.961)PGMKDIPR;HSLSGS(0.001)S(0.999)PGMKDIPR;HSLSGS(0.081)S(0.919)PGMKDIPR;HSLSGS(0.014)S(0.986)PGMKDIPR ;;; 215.45 1.20E-33 1231560000 526687 901840 621557 461609 1190880 991230 1524670 1994890 683650 858280 TRUE FALSE FALSE 643846.7061 1007302.343 851496.7994 486825.5308 1072311.806 1043129.27 1198911.799 1505640.1 820852.2842 644326.5915 0.999255214 1.563341256 1.321529812 0.7555571 1.66423646 1.618944932 1.860720658 2.336765422 1.273969281 1 19.29743261 -5.912904987 11.72158389 1.708442656 1.20043156 0.240417205 0.387480528 0.660074102 85.05299762 0.118210268 0.134070275 1.22E-06 5.912904987 -0.508011095 HSLSGSS(ph)PGMKDIPR ddPTM_HeLa_A486_30min_R1 1 HSLSGSSPGMKDIPR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLSGSS(1)PGMKDIPR 219.68 9.26E-34 162080000 176320 145050 110390 32127 221940 144840 232030 245010 124250 193200 TRUE FALSE FALSE 163960.8785 133555.7097 153135.9643 74793.27961 194102.2157 126971.1134 173973.6398 189226.5715 135020.09 144821.4625 1.132158699 0.92220937 1.057412083 0.516451625 1.340286256 0.876742378 1.201297355 1.30661967 0.932320995 1 17.1439159 HSLYTAELITVPFDSES(ph)PIR ddPTM_HeLa_A485_30min_R1 2 HSLYTAELITVPFDSESPIR 20 0 A0A075B754;Q96QE3;Q96QE3-2 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 HSLYTAELITVPFDS(0.211)ES(0.789)PIR;HSLYTAELITVPFDS(0.08)ES(0.92)PIR ; 136.35 1.56E-07 137169000 107370 147262 135332 128367 194263 120498 182712 225775 162981 217569 TRUE FALSE FALSE 131254.0861 164483.0099 185396.9384 135379.3642 174921.4936 126807.089 143674.0886 170403.3272 195689.7917 163333.0524 0.803597828 1.007040568 1.135085249 0.828854676 1.070949762 0.776371268 0.87963879 1.043287472 1.198102827 1 17.31745724 -7.47160409 5.618705222 1.106522518 0.936422762 0.261599596 0.118509774 0.26407722 19.27060886 0.069024561 0.031053382 3.38E-08 7.47160409 -0.170099756 HSLYTAELITVPFDSES(ph)PIR ddPTM_HeLa_A486_30min_R1 2 HSLYTAELITVPFDSESPIR 20 0 A0A075B754;Q96QE3;Q96QE3-2 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 HSLYTAELITVPFDS(0.019)ES(0.981)PIR;HSLYTAELITVPFDS(0.035)ES(0.965)PIR ; 106.67 2.56E-05 155026000 169031 177483 147178 65382 203986 179549 209722 192076 164355 212264 TRUE FALSE FALSE 157182.7998 163418.6007 204169.2632 152212.6002 178400.1738 157398.0699 157247.3374 148344.4878 178601.4237 159111.7128 0.987876989 1.027068327 1.283181857 0.95663982 1.121225903 0.989229939 0.988282601 0.932329149 1.122490737 1 17.27968052 -6.277382599 24.19254149 1.001100558 1.077492706 0.115463142 0.094430473 1148.875611 1743319.228 0.032808346 0.029046403 5.28E-07 6.277382599 0.076392148 HSPAPPPDPGFPAPS(ph)PPPADSPSEGFSLK ddPTM_HeLa_A485_30min_R1 1 HSPAPPPDPGFPAPSPPPADSPSEGFSLK 29 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 HSPAPPPDPGFPAPS(1)PPPADSPSEGFSLK 119.89 4.08E-05 147360000 157310 180440 144150 191370 197690 177810 245260 240430 154730 262040 TRUE FALSE FALSE 192303.0668 201540.8884 197477.0836 201824.0585 178007.2895 187119.8567 192858.1974 181464.1655 185782.8917 196718.2505 0.9775558 1.024515457 1.003857462 1.025954928 0.904884468 0.951207405 0.980377758 0.922457195 0.944411061 1 17.58577128 -5.745362519 24.99999314 0.948202795 1.008858856 0.501651303 0.027969993 189.0712127 294010.0891 0.007981705 0.010270541 1.80E-06 5.745362519 0.060656061 HSPEEDFRQS(ph)PQEHFR ddPTM_HeLa_A485_30min_R1 2 HSPEEDFRQSPQEHFR 16 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 HSPEEDFRQS(1)PQEHFR;HSPEEDFRQS(1)PQEHFR ; 241.77 9.64E-42 2057640000 260569 425160 481580 317430 566220 368850 427730 458590 403060 385690 TRUE FALSE FALSE 318531.6751 474878.7636 659736.4822 334770.3971 509845.1487 388162.4156 336341.9913 346120.0835 483950.4449 289544.5811 1.100112715 1.640088589 2.278531616 1.156196382 1.760851979 1.340596374 1.161624196 1.195394789 1.671419451 1 18.14342597 -6.413789161 5.796129356 1.270457107 1.60338525 0.173106337 0.344546242 0.428234687 19.39612409 0.123021012 0.107676629 3.86E-07 6.413789161 0.332928143 HSPEEDFRQS(ph)PQEHFR ddPTM_HeLa_A486_30min_R1 3 HSPEEDFRQSPQEHFR 16 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 HSPEEDFRQS(1)PQEHFR;HSPEEDFRQS(1)PQEHFR;HSPEEDFRQS(1)PQEHFR ;; 282.62 4.85E-59 2523520000 876119 969346 819141 384710 1175920 979374 1105605 1172240 869462 1042904 TRUE FALSE FALSE 814707.5824 892531.4927 1136334.333 895624.3222 1028425.149 858548.7934 828970.9351 905346.5418 944827.6662 781754.0502 1.042153324 1.141703701 1.453570125 1.145659971 1.315535427 1.098233892 1.060398644 1.158096388 1.208599643 1 19.57635526 -6.291768977 24.27781428 1.112155022 1.224266764 0.195330761 0.11573005 886.6269075 709711.551 0.041487658 0.036593806 5.11E-07 6.291768977 0.112111742 HSPIAPSS(ph)PSPQVLAQK ddPTM_HeLa_A485_30min_R1 2 HSPIAPSSPSPQVLAQK 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 HSPIAPS(0.003)S(0.996)PS(0.001)PQVLAQK;HSPIAPS(0.013)S(0.978)PS(0.009)PQVLAQK ; 174.65 1.34E-12 1050620000 385030 476060 367000 424690 615490 512710 678110 744120 417640 716820 TRUE FALSE FALSE 470678.5952 531731.0758 502768.5721 447889.7393 554209.6545 539554.7028 533226.2589 561623.4033 501456.5172 538129.9661 0.874655984 0.988109024 0.934288376 0.832307746 1.029880678 1.00264757 0.990887504 1.043657552 0.931850201 1 19.03759512 -5.787161841 24.99992449 1.001698169 0.915034273 0.482494662 0.046625089 204.7550171 199002.3984 0.014312668 0.016234634 1.63E-06 5.787161841 -0.086663896 HSPIAPSS(ph)PSPQVLAQK ddPTM_HeLa_A486_30min_R1 2 HSPIAPSSPSPQVLAQK 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 HSPIAPS(0.003)S(0.992)PS(0.005)PQVLAQK;HSPIAPS(0.092)S(0.906)PS(0.002)PQVLAQK ; 174.65 1.34E-12 891280000 806280 713060 473990 198368 790660 767020 977750 886590 699330 983410 TRUE FALSE FALSE 749763.9356 656554.5287 657531.6219 461810.729 691488.0502 672392.8709 733106.6084 684732.8111 759948.4875 737157.7351 1.01710109 0.890656772 0.891982259 0.626474779 0.938046252 0.912142461 0.994504396 0.928882353 1.030917063 1 19.49161383 -6.417925239 2.17684345 0.981690107 0.859850425 0.241236679 0.096156528 0.492562524 4.604618615 0.041847019 0.03469782 3.82E-07 6.417925239 -0.121839682 HSPTSEPTPPGDALPPVS(ph)SPHTHR ddPTM_HeLa_A485_30min_R1 1 HSPTSEPTPPGDALPPVSSPHTHR 24 0 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2;A0A087WX39 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 HSPTSEPTPPGDALPPVS(0.485)S(0.485)PHT(0.03)HR 81.534 0.0036809 45645000 6560.8 21980 23489 4928.2 22073 15328 18264 14956 16814 9259.1 TRUE FALSE FALSE 8020.227326 24550.3698 32178.55856 5197.415087 19875.33462 16130.55038 14361.7472 11288.01755 20188.41557 6950.976771 1.153827381 3.531930922 4.629357804 0.747724422 2.859358515 2.320616355 2.066148064 1.623946953 2.904399804 1 12.76300001 -5.268014646 24.98853396 2.018193911 3.147727918 0.209171301 1.034958949 823.4873858 3129567.942 0.285486572 0.434916611 5.39E-06 5.268014646 1.129534007 HSQAQS(ph)KPTT(ph)PEKTDLTNGEHAR ddPTM_HeLa_A485_30min_R1 1 HSQAQSKPTTPEKTDLTNGEHAR 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 HS(0.343)QAQS(0.616)KPT(0.227)T(0.803)PEKT(0.012)DLTNGEHAR 59.65 0.019621 265530000 109650 86853 43479 266010 122190 70159 165590 127150 77054 351220 TRUE FALSE FALSE 134041.2642 97009.70283 59563.69141 280541.4527 110024.3346 73832.41675 130210.3438 95966.26314 92518.03102 263667.3177 0.508372692 0.36792464 0.225904719 1.063997826 0.417284689 0.280021117 0.493843321 0.363967229 0.350889264 1 18.00835923 -10.82673995 2.646629909 1.189892846 0.453810588 0.356768235 0.220550936 61971874.07 41566973.37 74898454.11 0.055678184 1.49E-11 10.82673995 -0.736082258 HSQAQS(ph)KPTT(ph)PEKTDLTNGEHAR ddPTM_HeLa_A486_30min_R1 1 HSQAQSKPTTPEKTDLTNGEHAR 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 HSQAQS(1)KPT(0.129)T(0.869)PEKT(0.003)DLTNGEHAR 105.56 0.00023414 332500000 127760 119320 44150 94645 98897 152430 246660 229950 101810 257950 TRUE FALSE FALSE 118804.6838 109864.6486 61246.06238 220338.3431 86492.41608 133624.7364 184943.0591 177595.4048 110634.9728 193357.641 0.614429733 0.568193985 0.316750153 1.139537812 0.447318325 0.691075541 0.956481772 0.918481441 0.57217792 1 17.56091225 -3.870735403 0.14432467 1.052597304 1.76E-13 0.208736411 0.225652314 48.88077402 1.052842274 1.184570638 9.874926776 0.000134668 3.870735403 -1.052597304 HSQAQSKPTT(ph)PEKTDLTNGEHAR ddPTM_HeLa_A485_30min_R1 2 HSQAQSKPTTPEKTDLTNGEHAR 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 HSQAQSKPT(0.097)T(0.901)PEKT(0.002)DLTNGEHAR;HSQAQSKPT(0.002)T(0.998)PEKTDLTNGEHAR ; 208.88 5.95E-29 487870000 345960 241790 169430 611020 462810 285290 637810 513050 298410 971480 TRUE FALSE FALSE 422917.6085 270065.2372 232109.2076 644398.4754 416731.0114 300227.3433 501536.6831 387223.6831 358298.1498 729307.9148 0.57988896 0.37030345 0.318259548 0.883575322 0.571406128 0.411660613 0.687688523 0.530946772 0.491285152 1 19.47616853 -11.00294681 2.51107721 1.469413997 0.53849658 0.444934797 0.154693408 12246671.71 5548677.995 33222377.02 0.039240337 9.93E-12 11.00294681 -0.930917418 HSQAQSKPTT(ph)PEKTDLTNGEHAR ddPTM_HeLa_A486_30min_R1 2 HSQAQSKPTTPEKTDLTNGEHAR 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 HSQAQSKPT(0.03)T(0.969)PEKT(0.001)DLTNGEHAR;HSQAQSKPT(0.027)T(0.973)PEKTDLTNGEHAR ; 187.26 8.40E-21 499910000 307180 258620 108021 98429 229190 353150 454170 429720 216460 467590 TRUE FALSE FALSE 285648.2683 238126.0093 149849.6241 229147.6863 200442.8531 309581.9436 340531.8623 331882.1367 235222.9271 350502.4205 0.814968033 0.679384779 0.427528072 0.653769198 0.57187295 0.883251942 0.971553525 0.946875449 0.671102147 1 18.41906488 -6.270453686 22.70681585 0.89604871 0.622402842 0.536187937 0.123165139 151.2640158 381027.9937 0.043814772 0.039295311 5.36E-07 6.270453686 -0.273645868 HSQFIGYPITLFVEK ddPTM_HeLa_A485_30min_R1 3 HSQFIGYPITLFVEK 15 0 P07900;P07900-2;G3V2J8;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 0 ;; ;; 183.58 2.23E-11 151924000 210099 209613 164379 239313 298447 212342 334284 323730 200535 337757 FALSE FALSE TRUE 256834.7977 234125.417 225189.6325 252386.0632 268732.5688 223459.8988 262861.4926 244334.7099 240780.5351 253560.3959 1.012913696 0.923351678 0.888110431 0.995368628 1.059836525 0.881288649 1.036681977 0.96361543 0.949598356 1 17.9519699 -5.313376747 24.99959204 0.983357979 0.939647633 0.113249797 0.054176398 711.9490944 342688.9158 0.015081043 0.022368811 4.86E-06 5.313376747 -0.043710346 HSQFIGYPITLFVEK ddPTM_HeLa_A486_30min_R1 2 HSQFIGYPITLFVEK 15 0 P07900;P07900-2;G3V2J8;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 0 ; ; 168.32 1.97E-08 115543000 209160 191910 120390 79538 198334 196727 242490 243500 169021 245640 FALSE FALSE TRUE 194498.9641 176702.3527 167008.2322 185168.4836 173457.1003 172456.8229 181816.4372 188060.3656 183671.8764 184130.1452 1.056312447 0.959660095 0.907011896 1.005639155 0.942035321 0.936602873 0.987434388 1.021344796 0.997511169 1 17.49036631 -6.997168872 24.61795498 1.006534713 0.965007042 0.163441308 0.038804168 120.1934216 1045130.508 0.016444 0.011013935 1.01E-07 6.997168872 -0.041527671 HSQFLGYPITLYLEK ddPTM_HeLa_A485_30min_R1 3 HSQFLGYPITLYLEK 15 0 Q58FF8 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 0 0 ;; ;; 191.37 4.42E-12 665750000 646800 683640 603810 775050 964230 675950 1095860 1056550 660800 1131080 FALSE FALSE TRUE 790678.4286 763585.7511 827184.4456 817389.019 868227.8756 711341.6968 861720.5586 797429.4559 793416.4988 849122.572 0.931171134 0.89926446 0.97416377 0.96262783 1.022500054 0.837737354 1.014836476 0.939121727 0.934395722 1 19.6956133 -4.856966848 0.006252955 1.880504594 3.96E-07 0.073933153 0.051438614 41873.19196 50.03607555 7248.26525 7805.081609 1.39E-05 4.856966848 -1.880504198 HSQFLGYPITLYLEK ddPTM_HeLa_A486_30min_R1 4 HSQFLGYPITLYLEK 15 0 Q58FF8 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 0 0 ;;; ;;; 203.99 2.49E-16 764830000 1050750 1010000 634020 420230 1256190 1043840 1302390 1225630 879150 1266100 FALSE FALSE TRUE 977097.8511 929963.9216 879529.5236 978316.6772 1098626.937 915061.6338 976518.2467 946580.8043 955355.4299 949060.3191 1.029542413 0.979878626 0.926737222 1.030826658 1.157594427 0.964176476 1.028931699 0.9973874 1.006632993 1 19.85614026 -5.370484679 24.99999988 1.029364737 0.978810728 0.143064593 0.053275487 50.04894711 11433.23676 0.015498206 0.022987554 4.26E-06 5.370484679 -0.05055401 HSQPAT(ph)PTPLQSR ddPTM_HeLa_A485_30min_R1 4 HSQPATPTPLQSR 13 0 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 HSQPAT(0.996)PT(0.004)PLQSR;HSQPAT(0.994)PT(0.006)PLQSR;HSQPAT(0.999)PT(0.001)PLQSR;HSQPAT(0.981)PT(0.019)PLQSR ;;; 175.39 2.11E-12 4047360000 1622280 1913050 1810760 1683330 2789370 1763910 2354020 2456010 1644110 2338370 TRUE FALSE FALSE 1983150.589 2136764.556 2480635.476 1775286.055 2511650.529 1856265.6 1851064.396 1853669.697 1974067.796 1755457.394 1.129705908 1.217212428 1.413099221 1.011295439 1.430767011 1.057425607 1.05446273 1.055946845 1.124531876 1 20.74341555 HSQPAT(ph)PTPLQSR ddPTM_HeLa_A486_30min_R1 5 HSQPATPTPLQSR 13 0 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 HSQPAT(0.994)PT(0.006)PLQSR;HSQPAT(0.997)PT(0.003)PLQSR;HSQPAT(0.904)PT(0.096)PLQSR;HSQPAT(0.971)PT(0.029)PLQSR;HSQPAT(0.978)PT(0.022)PLQSR ;;;; 175.39 2.11E-12 4634470000 2071090 2085650 1612740 779970 2393670 2031580 2517660 2428510 1648020 2247420 TRUE FALSE FALSE 1925917.286 1920375.498 2237236.119 1815809.578 2093433.589 1780944.315 1887714.839 1875591.287 1790871.701 1684651.404 1.143214128 1.139924553 1.328011311 1.077854786 1.242650903 1.057158954 1.120537361 1.113340886 1.063051796 1 20.68401866 -7.348157649 0.467417523 1.001716038 1.194650222 0.400449039 0.070084628 0.951126077 0.518851285 0.073851108 0.051728939 4.49E-08 7.348157649 0.192934185 HSQPS(ph)PEPHS(ph)PTEPPAWGSSIVK ddPTM_HeLa_A485_30min_R1 2 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 2 0 HS(0.197)QPS(0.815)PEPHS(0.494)PT(0.494)EPPAWGSSIVK;HS(0.189)QPS(0.798)PEPHS(0.795)PT(0.218)EPPAWGSSIVK ; 104.83 0.00013289 1269070000 759280 818490 627040 915070 1009910 739450 1202460 1194600 749300 1191690 TRUE FALSE FALSE 928179.2165 914205.2856 859008.1893 965057.957 909359.8144 778166.4586 945544.5978 901622.4769 899677.637 894623.6144 1.037508067 1.021888167 0.960189487 1.078730699 1.016471955 0.869825529 1.05691889 1.007823248 1.005649328 1 19.77092131 -1.00000915 0.711571375 0.99847013 6.418649822 0.044269325 0.053471493 1198.816835 6.060421247 0.021149086 10357.50042 0.099997893 1.00000915 5.420179692 HSQPS(ph)PEPHS(ph)PTEPPAWGSSIVK ddPTM_HeLa_A486_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 2 0 HS(0.001)QPS(0.999)PEPHS(0.924)PT(0.076)EPPAWGSSIVK 146.23 1.79E-09 600400000 286390 270580 182220 103240 287540 285970 301030 303550 224480 330700 TRUE FALSE FALSE 266315.5399 249138.2554 252780.464 240347.9375 251474.052 250689.9289 225709.11 234438.2914 243938.1071 247890.5675 1.074327041 1.00503322 1.019726029 0.969572743 1.014455913 1.011292731 0.910519155 0.945733006 0.984055624 1 17.91934385 -1 0.418841789 0.965361266 2.863157694 0.479662875 0.030587893 68.48146512 0.881236529 0.021763386 108.7739972 0.1 1 1.897796428 HSQPS(ph)PEPHSPTEPPAWGSSIVK ddPTM_HeLa_A485_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HS(0.155)QPS(0.813)PEPHS(0.016)PT(0.016)EPPAWGSSIVK 128.49 2.02E-06 478110000 201670 237320 168780 281760 307830 237280 354720 370850 221740 383420 TRUE FALSE FALSE 246530.7957 265072.5096 231218.7455 297151.8353 277181.3643 249703.6139 278931.1742 279898.456 266241.1841 287840.4503 0.856484193 0.92090083 0.803287881 1.032349119 0.96296877 0.867507029 0.969047866 0.972408345 0.924960977 1 18.13490982 -1 0.244180116 0.976107478 0.24945045 0.26799834 0.05755249 73.42826068 0.988285553 0.077628383 21.75187956 0.1 1 -0.726657028 HSQPS(ph)PEPHSPTEPPAWGSSIVK ddPTM_HeLa_A486_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HS(0.006)QPS(0.992)PEPHS(0.002)PTEPPAWGSSIVK 80.117 0.0033883 204820000 36435 40745 29682 13570 57583 48311 58584 63960 30957 45240 TRUE FALSE FALSE 33881.09465 37516.21781 41175.66531 31591.64579 50360.4032 42350.88001 43925.66356 49397.70424 33640.37769 33911.60954 0.999100164 1.106294226 1.214205574 0.93158792 1.48504904 1.248860806 1.295298694 1.456660563 0.9920018 1 15.04949164 -5.748754031 24.99999952 1.271721671 1.076718863 0.214036125 0.167251443 328.7532238 647896.4929 0.047156997 0.060465736 1.78E-06 5.748754031 -0.195002808 HSQPSPEPHS(ph)PT(ph)EPPAWGSSIVK ddPTM_HeLa_A486_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 2 0 HS(0.172)QPS(0.493)PEPHS(0.669)PT(0.666)EPPAWGSSIVK 114.2 7.13E-05 543790000 345960 329500 198670 119890 356980 351040 406300 399050 277280 396110 TRUE FALSE FALSE 321709.9905 303389.22 275600.3446 279109.9789 312204.2397 307732.2539 304639.4426 308195.0262 301314.8537 296921.4778 1.083485078 1.021782669 0.928192688 0.940012764 1.051470719 1.036409546 1.025993286 1.037968114 1.014796423 1 18.17972193 -5.794875431 24.99969564 1.030014255 0.990742348 0.135451234 0.042147158 372.364872 278410.5406 0.014159514 0.016056294 1.60E-06 5.794875431 -0.039271907 HSQPSPEPHS(ph)PTEPPAWGSSIVK ddPTM_HeLa_A485_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HSQPS(0.001)PEPHS(0.865)PT(0.134)EPPAWGSSIVK 109.41 0.0001535 394780000 142500 160770 113500 114100 201280 100080 177860 196540 131760 158320 TRUE FALSE FALSE 174198.6334 179570.653 155488.3731 120332.9941 181239.8565 105320.034 139858.758 148338.2568 158203.0234 118853.7377 1.465655492 1.510854068 1.308232927 1.012446024 1.524898249 0.886131443 1.176729994 1.248073975 1.331073187 1 16.85882775 -4.936667894 4.220171842 1.180439829 1.484055445 0.352939032 0.171897431 0.229094855 8.203893283 0.04438013 0.097406844 1.16E-05 4.936667894 0.303615617 HSQPSPEPHS(ph)PTEPPAWGSSIVK ddPTM_HeLa_A486_30min_R1 2 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 HS(0.035)QPS(0.156)PEPHS(0.557)PT(0.252)EPPAWGSSIVK;HS(0.219)QPS(0.186)PEPHS(0.297)PT(0.297)EPPAWGS(0.001)SIVK ; 75.103 0.0042986 1346090000 1178790 1120270 674160 300140 1129520 1038520 1422190 1348040 1005600 1341800 TRUE FALSE FALSE 1096162.908 1031495.725 935212.8066 698741.0882 987845.0692 910397.9613 1066343.02 1041120.72 1092766.218 1005804.546 1.089836899 1.025542914 0.929815649 0.69470862 0.982144168 0.905144011 1.060189103 1.035112362 1.086459811 1 19.93991855 -6.766133209 24.85685044 1.048366373 0.932444911 0.220771268 0.098633747 179.4214664 950138.4854 0.043472439 0.030403966 1.71E-07 6.766133209 -0.115921462 HSS(ph)ETFSSTPSATR ddPTM_HeLa_A485_30min_R1 2 HSSETFSSTPSATR 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 HSS(0.852)ET(0.148)FSSTPSATR;HS(0.056)S(0.943)ETFSSTPSATR ; 322.06 3.31E-69 760710000 335470 446410 422310 350160 574830 404140 567790 475890 387900 560030 TRUE FALSE FALSE 410094.1441 498613.7662 578540.0428 369288.3541 517597.9068 425300.1455 446477.0281 359177.2313 465747.972 420424.8276 0.975427989 1.185976026 1.376084391 0.87836952 1.231130687 1.01159617 1.06196637 0.854319745 1.107803206 1 18.68148834 -6.398489038 8.053678808 0.999936735 1.132183847 0.158219406 0.140665861 0.528917068 32.35276847 0.048850949 0.043005292 3.99E-07 6.398489038 0.132247112 HSS(ph)ETFSSTPSATR ddPTM_HeLa_A486_30min_R1 2 HSSETFSSTPSATR 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 HSS(0.998)ET(0.002)FSSTPSATR;HS(0.001)S(0.997)ET(0.001)FSSTPSATR ; 298.78 1.55E-83 0 439070 447010 357370 70336 479420 397460 488110 462490 381190 388110 TRUE FALSE FALSE 408293.4604 411587.2996 495753.2347 163745.7626 419286.6732 348425.4263 365979.7153 357191.1231 414231.8561 290924.7298 1.403433323 1.414755287 1.704060136 0.562845801 1.441220461 1.197648019 1.257987643 1.227778482 1.423845461 1 18.15028641 HSS(ph)ETFSSTTTVTPVS(ph)PSFAHNPK ddPTM_HeLa_A485_30min_R1 2 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 HS(0.385)S(0.431)ET(0.095)FS(0.022)S(0.024)T(0.027)T(0.008)T(0.01)VT(0.007)PVS(0.878)PS(0.114)FAHNPK;HS(0.409)S(0.531)ET(0.054)FS(0.001)S(0.001)T(0.002)T(0.001)T(0.001)VTPVS(0.994)PS(0.006)FAHNPK ; 156.02 8.67E-10 568920000 175042 183121 150470 197625 256660 187779 283350 235105 182798 309930 TRUE FALSE FALSE 213979.489 204535.408 206135.1146 208420.7533 231106.0292 197610.8181 222809.9577 177445.1301 219483.8819 232670.1548 0.91966883 0.879078832 0.885954259 0.895777774 0.993277498 0.849317431 0.957621565 0.762646719 0.943326324 1 17.82792664 -5.548130931 24.99909144 0.908054953 0.892909596 0.014339784 0.067057488 1669.292255 1652550.692 0.019267997 0.024875518 2.83E-06 5.548130931 -0.015145357 HSS(ph)ETFSSTTTVTPVS(ph)PSFAHNPK ddPTM_HeLa_A486_30min_R1 1 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 HS(0.441)S(0.551)ET(0.004)FS(0.001)S(0.002)T(0.002)TTVTPVS(0.964)PS(0.036)FAHNPK 183.48 1.74E-20 347730000 214830 205780 124390 23090 239760 184490 252330 238180 195430 163190 TRUE FALSE FALSE 199771.5264 189473.2434 172557.1393 53754.6869 209687.0651 161729.4996 189194.3651 183951.6134 212370.0298 122326.1618 1.63310549 1.548918404 1.410631518 0.439437371 1.714163692 1.322117012 1.546638612 1.503779819 1.736096568 1 16.90037346 HSS(ph)ETFSSTTTVTPVSPSFAHNPK ddPTM_HeLa_A486_30min_R1 1 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 HS(0.176)S(0.822)ET(0.002)FSSTTTVTPVSPSFAHNPK 244.19 3.55E-49 319970000 145360 129470 93291 6985.8 149310 130940 133100 149230 133960 72714 TRUE FALSE FALSE 135171.0146 119210.3257 129415.7736 16263.29544 130582.1475 114785.9541 99796.97221 115253.5867 145571.7607 54505.94111 2.479931763 2.187107006 2.374342521 0.298376564 2.395741544 2.105934725 1.830937512 2.114514204 2.670750338 1 15.73412587 HSS(ph)IS(ph)PSTLTLK ddPTM_HeLa_A485_30min_R1 3 HSSISPSTLTLK 12 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 HS(0.002)S(0.997)IS(0.458)PS(0.207)T(0.336)LTLK;HS(0.002)S(0.998)IS(0.724)PS(0.243)T(0.032)LTLK;HS(0.076)S(0.924)IS(0.649)PS(0.14)T(0.203)LT(0.008)LK ;; 203.87 7.84E-17 615850000 1264470 1243900 893780 1800960 1766080 1333180 1909430 1909060 1122070 2220190 TRUE FALSE FALSE 1545746.989 1389363.285 1224426.415 1899341.885 1590242.874 1402983.243 1501464.682 1440860.042 1347259.157 1666737.493 0.927408783 0.833582547 0.734624631 1.139556705 0.954105179 0.841754175 0.900840527 0.864479289 0.808321144 1 20.66859547 -5.82411284 0.005998339 1.787774183 2.31E-07 0.021822699 0.10646842 70818.39138 126.6923607 18461.12939 19297.21771 1.50E-06 5.82411284 -1.787773951 HSS(ph)IS(ph)PSTLTLK ddPTM_HeLa_A486_30min_R1 1 HSSISPSTLTLK 12 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 HS(0.014)S(0.986)IS(0.847)PS(0.063)T(0.087)LT(0.002)LK 121.76 0.00017249 214920000 1097200 1035200 589500 457310 975140 1144500 1359800 1265900 788150 1472000 TRUE FALSE FALSE 1020291.946 953166.9819 817770.1874 1064640.791 852828.8484 1003303.226 1019563.658 977682.2044 856467.4766 1103401.619 0.924678674 0.863844103 0.74113557 0.964871515 0.772908825 0.909281996 0.924018635 0.886061963 0.776206471 1 20.07352657 HSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A485_30min_R1 3 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HS(0.468)S(0.532)IS(1)PVRLPLNSSLGAELSR;HS(0.104)S(0.896)IS(1)PVRLPLNSSLGAELSR;HS(0.368)S(0.634)IS(0.998)PVRLPLNSSLGAELSR ;; 99.423 0.00052065 2134510000 467310 580680 570140 606750 814220 655200 858420 835350 607230 891330 TRUE FALSE FALSE 571261.4973 648585.4748 781058.5115 639895.2161 733153.3979 689505.2589 675011.5544 630479.1027 729095.4912 669137.8347 0.853727689 0.969285312 1.16726102 0.956298064 1.095668725 1.030438309 1.008778041 0.942226056 1.089604344 1 19.35194389 -4.394819553 3.989004202 1.034044725 0.856896884 0.424729519 0.064565228 0.21006674 5.233457013 0.01566188 0.077989149 4.03E-05 4.394819553 -0.177147841 HSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A486_30min_R1 3 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HS(0.021)S(0.979)IS(1)PVRLPLNSSLGAELSR;HS(0.023)S(0.977)IS(1)PVRLPLNSSLGAELSR;HS(0.122)S(0.878)IS(1)PVRLPLNSSLGAELSR ;; 171.08 9.27E-14 3008100000 851000 803060 670580 266390 881020 831160 943280 952890 775460 872930 TRUE FALSE FALSE 791349.2946 739422.6009 930246.5348 620169.3826 770514.2564 728619.9298 707261.367 735937.7484 842677.4972 654342.6462 1.209380589 1.130023551 1.421650477 0.947774666 1.177539414 1.113514355 1.080873104 1.124697821 1.287822981 1 19.31968677 -5.265736423 24.99985834 1.112220496 1.241318734 0.27329757 0.110365261 539.0012477 3135869.256 0.029936016 0.046193692 5.42E-06 5.265736423 0.129098239 HSS(ph)ISPST(ph)LTLK ddPTM_HeLa_A486_30min_R1 1 HSSISPSTLTLK 12 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 HS(0.102)S(0.898)IS(0.016)PS(0.42)T(0.552)LT(0.012)LK 96.464 0.0038181 258270000 1241500 1250000 626450 561860 1250300 1431400 1746300 1600500 1092500 1693600 TRUE FALSE FALSE 1154477.261 1150945.448 869028.2169 1308038.475 1093475.715 1254808.421 1309357.27 1236101.089 1187198.78 1269511.537 0.909386979 0.906604954 0.684537471 1.030347844 0.861335785 0.988418289 1.031386665 0.973682439 0.935161868 1 20.27584207 -5.294893262 24.99984592 0.971492578 0.840819164 0.429350849 0.074204412 616.9799052 461063.4209 0.020886518 0.030981891 5.07E-06 5.294893262 -0.130673413 HSS(ph)NPPLESHVGWVMDSR ddPTM_HeLa_A485_30min_R1 7 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 0 HS(0.008)S(0.992)NPPLESHVGWVMDSR;HS(0.148)S(0.852)NPPLESHVGWVMDSR;HS(0.033)S(0.967)NPPLESHVGWVMDSR;HS(0.101)S(0.899)NPPLESHVGWVMDSR;HS(0.007)S(0.993)NPPLESHVGWVMDSR;HS(0.014)S(0.986)NPPLESHVGWVMDSR;HS(0.072)S(0.928)NPPLESHVGWVMDSR ;;;;;; 254.87 8.43E-58 9911770000 679381 897855 837902 767697 1128967 834529 1152587 1156600 837406 1120060 TRUE FALSE FALSE 830506.9596 1002851.332 1147876.818 809634.3432 1016563.081 878223.648 906327.3717 872942.0365 1005465.703 840849.6552 0.987699709 1.19266426 1.365139191 0.962876465 1.208971277 1.04444789 1.077870897 1.038166611 1.195773462 1 19.68148834 -5.287068016 24.98257881 1.081407371 1.182917496 0.158681753 0.1116633 1393.150544 1358028.179 0.030871504 0.045805137 5.16E-06 5.287068016 0.101510125 HSS(ph)NPPLESHVGWVMDSR ddPTM_HeLa_A486_30min_R1 7 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 0 HS(0.009)S(0.991)NPPLESHVGWVMDSR;HS(0.175)S(0.825)NPPLESHVGWVMDSR;HS(0.151)S(0.849)NPPLESHVGWVMDSR;HS(0.078)S(0.922)NPPLESHVGWVMDSR;HS(0.199)S(0.801)NPPLESHVGWVMDSR;HS(0.058)S(0.942)NPPLESHVGWVMDSR;HS(0.322)S(0.678)NPPLESHVGWVMDSR ;;;;;; 229.2 5.28E-35 15400010000 1217834 1147287 957605 437167 1309558 1136310 1423955 1352263 1027481 1311873 TRUE FALSE FALSE 1132470.126 1056371.8 1328415.302 1017746.869 1145301.024 996123.6254 1067666.398 1044382.235 1116543.88 983371.4619 1.151619881 1.074234753 1.350878435 1.034956686 1.164667746 1.012967799 1.08572034 1.062042448 1.135424327 1 19.90737696 HSS(ph)PHISR ddPTM_HeLa_A485_30min_R1 1 HSSPHISR 8 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 0 HS(0.021)S(0.979)PHISR 107.55 0.00097756 346910000 103990 193420 189990 42812 213970 106620 153890 149850 147600 105830 TRUE FALSE FALSE 127122.2167 216038.7865 260275.2071 45150.71115 192666.3955 112202.4583 121010.1443 113099.0525 177221.9661 79448.52866 1.600057533 2.719229545 3.276022999 0.568301414 2.425046741 1.412266032 1.523126311 1.423551253 2.23065133 1 16.27773288 -5.251677012 24.99005966 1.563867466 2.550515907 0.351245977 0.63228611 770.1101048 1971351.772 0.165696935 0.282495604 5.60E-06 5.251677012 0.98664844 HSS(ph)PHISR ddPTM_HeLa_A486_30min_R1 1 HSSPHISR 8 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 0 HS(0.04)S(0.96)PHISR 88.948 0.0030248 224230000 144020 130850 128530 10146 144170 101740 124220 94562 156740 46119 TRUE FALSE FALSE 133924.9417 120480.9695 178300.2582 23620.40075 126086.8543 89188.35322 93138.84213 73032.29687 170326.3494 34570.50222 3.873965755 3.485080104 5.157583683 0.68325304 3.647238142 2.579897528 2.694170931 2.112561062 4.92692725 1 15.07725394 -5.237419609 24.99966067 2.623583467 4.103496668 0.279095865 1.206997466 1113.811914 1159248.71 0.309606415 0.535920663 5.79E-06 5.237419609 1.479913201 HSS(ph)PHQS(ph)EDEEDPR ddPTM_HeLa_A485_30min_R1 1 HSSPHQSEDEEDPR 14 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 2 0 HS(0.167)S(0.833)PHQS(0.999)EDEEDPR 77.969 0.0057673 2148700000 494830 707360 563880 559270 761990 513430 793940 842480 617140 872050 TRUE FALSE FALSE 604903.2264 790079.5988 772482.677 589821.504 686123.6001 540312.4009 624308.2331 635860.459 740994.3373 654663.9839 0.923990385 1.20684751 1.179968191 0.900953036 1.0480546 0.825327823 0.953631555 0.971277594 1.131869716 1 19.32039509 -5.26059383 24.99933019 0.970484773 1.113926577 0.237701748 0.104016706 98.28634167 2905883.131 0.028549168 0.046034802 5.49E-06 5.26059383 0.143441805 HSS(ph)PHQS(ph)EDEEDPR ddPTM_HeLa_A486_30min_R1 1 HSSPHQSEDEEDPR 14 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 2 0 HS(0.12)S(0.88)PHQS(1)EDEEDPR 117.37 0.00013192 3979600000 1386800 1596000 1192400 411350 1557900 1466600 1601500 1622100 1304700 1561300 TRUE FALSE FALSE 1289592.481 1469527.147 1654129.214 957643.5885 1362493.655 1285665.803 1200787.761 1252783.24 1417792.446 1170340.318 1.101895288 1.255640881 1.413374545 0.818260786 1.164185865 1.098540129 1.026015889 1.070443546 1.211436046 1 20.15849667 -5.244188213 24.99887617 1.063576323 1.256837276 0.365047109 0.121408104 930.0671295 1347769.618 0.032360579 0.055870603 5.70E-06 5.244188213 0.193260953 HSS(ph)PSGTVAAR ddPTM_HeLa_A486_30min_R1 1 HSSPSGTVAAR 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 HS(0.247)S(0.753)PSGTVAAR 131.36 2.86E-05 114450000 76122 75526 66363 17878 97002 73169 78689 76136 65549 68377 TRUE FALSE FALSE 70786.24089 69541.0447 92060.53086 41620.8875 84835.10465 64142.15271 59000.17991 58801.49484 71230.8401 51254.95414 1.381061442 1.35676728 1.796129416 0.812036382 1.655159117 1.251433228 1.151111749 1.147235342 1.38973571 1 15.64540384 -7.558916101 0.043578434 4.16E-06 2.454914352 0.169620809 0.252162941 89.52739775 3.850663829 108.2150562 105.468306 2.76E-08 7.558916101 2.454910194 HSS(ph)TGDSADAGPPAAGSAR ddPTM_HeLa_A486_30min_R1 1 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 HS(0.004)S(0.996)TGDSADAGPPAAGSAR 199.65 1.80E-25 212780000 208860 226340 176700 44844 229410 221370 259190 240030 235440 236550 TRUE FALSE FALSE 194219.9926 208403.9941 245122.9722 104399.0983 200635.2586 194059.6201 194337.9206 185380.4088 255848.1288 177316.3403 1.095330482 1.175323119 1.382404869 0.588773139 1.131510262 1.09442604 1.095995554 1.045478428 1.442890871 1 17.43596597 -9.351980329 10.57242392 0.999998949 1.107950285 0.024216629 0.21599477 0 0 0.205810568 0.049916395 4.45E-10 9.351980329 0.107951336 HSS(ph)YPAGTEDDEGMGEEPSPFR ddPTM_HeLa_A485_30min_R1 1 HSSYPAGTEDDEGMGEEPSPFR 22 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 1 0 HS(0.121)S(0.879)YPAGTEDDEGMGEEPSPFR 306.09 2.62E-88 1154200000 218370 289770 257430 249680 315720 229050 327120 349620 254860 378230 TRUE FALSE FALSE 266945.6531 323656.0808 352664.0696 263319.3862 284285.8082 241042.7038 257228.1397 263875.1468 306008.0643 283944.2218 0.940134127 1.139857958 1.242018828 0.927363073 1.001203005 0.848908642 0.905910809 0.929320361 1.077704848 1 18.11524803 -5.290346283 24.97158632 0.948190611 1.110589097 0.368606941 0.090492087 679.5377183 587025.693 0.025876555 0.038388018 5.12E-06 5.290346283 0.162398485 HSSDINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_HeLa_A485_30min_R1 3 HSSDINHLVTQGRESPEGSYTDDANQEVR 29 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 HSSDINHLVTQGRES(1)PEGSYTDDANQEVR;HSSDINHLVTQGRES(1)PEGSYTDDANQEVR;HSSDINHLVT(0.001)QGRES(0.999)PEGSYTDDANQEVR ;; 284.97 7.35E-78 3651850000 256435 823209 1119216 92945.4 1212710 431027 615137 609138 688323 269160 TRUE FALSE FALSE 313478.0811 919476.1316 1533260.573 98022.77185 1091968.334 453594.9072 483707.9547 459745.9504 826463.1124 202063.3655 1.551385033 4.550434608 7.588018585 0.485109073 5.404088621 2.244815165 2.393842909 2.275256325 4.090118515 1 17.62444826 -6.301363248 24.60273025 2.480074453 3.964482563 0.129258972 1.958634638 982.7015623 605577.9233 0.679228692 0.599031943 5.00E-07 6.301363248 1.484408109 HSSDINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_HeLa_A486_30min_R1 1 HSSDINHLVTQGRESPEGSYTDDANQEVR 29 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 HSSDINHLVTQGRES(1)PEGSYTDDANQEVR 265.21 9.03E-64 884430000 178710 232810 362110 10055 425180 122180 133140 134940 257460 65492 TRUE FALSE FALSE 166183.3519 214361.2877 502328.6896 23408.54815 371849.9598 107106.6738 99826.96379 104217.1077 279776.8401 49092.37692 3.385115211 4.366488265 10.23231551 0.476826538 7.574494924 2.181737381 2.033451425 2.122877609 5.698987453 1 15.5832114 -6.29705522 24.55032297 2.641717634 5.176742808 0.193985879 2.648708983 849.8529892 585808.6261 0.903067172 0.79646185 5.05E-07 6.29705522 2.535025173 HSSETFS(ph)STTTVTPVS(ph)PSFAHNPK ddPTM_HeLa_A485_30min_R1 1 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 HS(0.236)S(0.236)ET(0.236)FS(0.275)S(0.014)T(0.004)T(0.002)T(0.001)VT(0.003)PVS(0.788)PS(0.206)FAHNPK 69.088 0.0045438 166340000 111780 97983 84287 129420 151610 107760 158180 155680 101380 192060 TRUE FALSE FALSE 136645.0754 109441.2595 115468.2688 136489.8869 136515.1761 113402.147 124383.5508 117499.2359 121726.0361 144182.9766 0.947719894 0.759044251 0.800845367 0.946643564 0.946818961 0.786515507 0.862678478 0.814931406 0.844246935 1 17.13754131 -11.59262519 2.023224284 3.30449582 0.854288541 0.295230412 0.066379057 3827104.816 263562.2874 40288638.81 0.017496347 2.55E-12 11.59262519 -2.450207278 HSSS(ph)LPR ddPTM_HeLa_A485_30min_R1 1 HSSSLPR 7 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 HS(0.004)S(0.039)S(0.957)LPR 81.95 0.0065407 0 6956.1 22153 25642 2368 20965 9683.4 15410 15572 14712 5993.6 TRUE FALSE FALSE 8503.460447 24743.60064 35128.04285 2497.357844 18877.65099 10190.40785 12117.52761 11752.94258 17664.56345 4499.505824 1.889865416 5.499181824 7.807089095 0.555029361 4.195494289 2.264783789 2.693079659 2.612051866 3.925889674 1 12.13555085 -5.270653193 24.99964277 2.604349907 5.10875917 0.326901426 1.70205162 770.0531209 2089367.389 0.46978694 0.707833976 5.36E-06 5.270653193 2.504409263 HSSS(ph)PLSPGGPTHLTKPTTTSSSER ddPTM_HeLa_A485_30min_R1 1 HSSSPLSPGGPTHLTKPTTTSSSER 25 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C1J7 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 HS(0.019)S(0.134)S(0.846)PLSPGGPTHLTKPTTTSSSER 115.76 0.0001188 286970000 69741 229650 207130 20889 259110 104430 121890 133570 162050 55304 TRUE FALSE FALSE 85254.64485 256505.5698 283756.0064 22030.11318 233312.0986 109897.7933 95847.20575 100811.7481 194571.9486 41517.73059 2.053451468 6.178217502 6.834574104 0.530619397 5.619577353 2.647008682 2.308584896 2.428161333 4.686478423 1 15.34143997 -5.250602997 24.99427886 2.902692553 5.137694474 0.239225674 1.84196885 1057.612753 2439395.109 0.485460088 0.830306368 5.62E-06 5.250602997 2.235001922 HSSSPLS(ph)PGGPTHLTKPTTTSSSER ddPTM_HeLa_A485_30min_R1 3 HSSSPLSPGGPTHLTKPTTTSSSER 25 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C1J7 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 HS(0.001)S(0.006)S(0.005)PLS(0.988)PGGPTHLTKPTTTSSSER;HSSSPLS(1)PGGPTHLTKPTTTSSSER;HSSSPLS(1)PGGPTHLTKPTTTSSSER ;; 202.14 1.27E-28 2308430000 329668 750490 724003 115773 1031930 435586 531190 581540 605820 247680 TRUE FALSE FALSE 403001.5093 838253.2771 991841.838 122097.3858 929187.4259 458392.6094 417696.9171 438916.4032 727402.5171 185937.9342 2.167398014 4.508242391 5.334262974 0.656656676 4.997298856 2.465299033 2.246431955 2.360553295 3.912071628 1 17.50446161 -9.39117134 0.209076667 7.84E-11 3.877361136 0.174023818 1.407353382 21.27785021 1.355947006 20.72368869 4.083253357 4.06E-10 9.39117134 3.877361136 HSSSPLS(ph)PGGPTHLTKPTTTSSSER ddPTM_HeLa_A486_30min_R1 2 HSSSPLSPGGPTHLTKPTTTSSSER 25 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C1J7 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 HSSS(0.001)PLS(0.999)PGGPTHLTKPTTTSSSER;HSSSPLS(1)PGGPTHLTKPTTTSSSER ; 187.04 1.22E-20 1056020000 795910 1008040 1002660 50375 1277030 519480 643640 648740 921590 221470 TRUE FALSE FALSE 740120.8191 928159.2392 1390916.804 117275.5458 1116852.99 455391.8393 482594.4643 501036.0639 1001474.163 166012.4705 4.458224234 5.590900711 8.37838748 0.706426123 6.727524664 2.743118261 2.906977186 3.018062815 6.032523704 1 17.34093209 -5.254743032 24.99975372 3.491649211 6.087343566 0.293106567 2.004208474 724.13118 2703422.777 0.525019701 0.883381305 5.56E-06 5.254743032 2.595694355 HSST(ph)GDSADAGPPAAGSAR ddPTM_HeLa_A486_30min_R1 1 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 HS(0.291)S(0.291)T(0.413)GDS(0.005)ADAGPPAAGSAR 196.61 1.26E-19 734400000 203270 212120 182340 43452 276700 187500 208970 218450 165700 201170 TRUE FALSE FALSE 189021.8227 195310.8387 252946.9312 101158.4519 241993.7059 164368.1564 156683.4957 168713.7037 180063.0094 150795.7226 1.253495918 1.295201451 1.677414497 0.670831043 1.604778317 1.090005429 1.039044696 1.118822874 1.194085656 1 17.20223598 -5.925498825 0.437766502 1.0521749 1.382995149 0.115220277 0.260679024 3.403637949 1.258977583 0.239915303 0.495441645 1.19E-06 5.925498825 0.330820248 HST(ph)SPASSEYSWK ddPTM_HeLa_A486_30min_R1 1 HSTSPASSEYSWK 13 0 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 0 HS(0.162)T(0.473)S(0.335)PAS(0.03)S(0.001)EYSWK 89.663 0.00062679 0 546310 540600 301020 50336 506060 457430 494320 468620 466200 342930 TRUE FALSE FALSE 508016.4901 497760.8872 417583.0056 117184.7518 442585.236 400996.9374 370635.9076 361925.4559 506610.5914 257058.0959 1.976271116 1.936375065 1.62446938 0.455868746 1.721732336 1.559946735 1.441837131 1.407951983 1.970801929 1 17.97173492 -4.908308257 4.804123937 1.384195038 1.944461821 0.265084768 0.388933418 0.284289555 11.21023339 0.103765494 0.226521456 1.24E-05 4.908308257 0.560266783 HSTENDS(ph)PTNVQQ ddPTM_HeLa_A485_30min_R1 3 HSTENDSPTNVQQ 13 0 B3KVN2;P49354-2;P49354 B3KVN2 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 1 0 HSTENDS(1)PTNVQQ;HSTENDS(1)PTNVQQ;HS(0.001)T(0.009)ENDS(0.986)PT(0.004)NVQQ ;; 308.08 3.10E-68 1392090000 536335 847762 794758 484222 1059200 637857 978321 970280 713133 859573 TRUE FALSE FALSE 655640.8704 946900.3914 1088772.057 510673.8217 953742.3289 671254.2062 769294.7262 732317.3087 856252.2519 645297.2704 1.016029202 1.467386327 1.68724107 0.791377626 1.477989095 1.040224772 1.192155556 1.134852637 1.326911319 1 19.2996044 -5.25032094 24.99344168 1.155656451 1.397935559 0.195962519 0.232296722 1234.879242 2775913.687 0.060704711 0.103922127 5.62E-06 5.25032094 0.242279109 HSTENDS(ph)PTNVQQ ddPTM_HeLa_A486_30min_R1 1 HSTENDSPTNVQQ 13 0 B3KVN2;P49354-2;P49354 B3KVN2 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 1 0 HST(0.001)ENDS(0.996)PT(0.003)NVQQ 176.43 1.09E-12 584600000 536350 580840 507640 63558 714370 491990 613260 652660 565580 502650 TRUE FALSE FALSE 498754.6347 534812.123 704211.8031 147966.236 624767.0534 431293.276 459815.8616 504063.5655 614604.9298 376783.1683 1.323717928 1.419416174 1.869010779 0.392709252 1.65816073 1.144672353 1.220372618 1.337808076 1.631189983 1 18.52337499 HSTPS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 HSTPSPTR 8 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 HST(0.002)PS(0.987)PT(0.012)R;HST(0.006)PS(0.975)PT(0.018)R;HST(0.004)PS(0.983)PT(0.013)R ;; 65.278 0.016963 1925220000 717730 948610 897570 616278 1044480 638778 941620 695550 860700 1091010 TRUE FALSE FALSE 877386.5624 1059541.688 1229618.494 649943.7066 940487.9038 672223.4283 740435.1947 524965.2719 1033434.595 819041.2856 1.071236063 1.293636483 1.501290003 0.793542057 1.148278994 0.820744253 0.904026705 0.640950928 1.261761298 1 19.64357665 -5.269188538 24.99795551 0.925913064 1.289212417 0.409098175 0.192484999 530.2676003 1710585.765 0.052390183 0.079386355 5.38E-06 5.269188538 0.363299353 HSTPS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 HSTPSPTR 8 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 HS(0.001)T(0.009)PS(0.987)PT(0.003)R;HST(0.002)PS(0.997)PT(0.001)R;HST(0.005)PS(0.964)PT(0.031)R ;; 79.889 0.0067627 1619060000 1151130 946610 1053880 75508 1057850 1070810 1104330 895910 1266980 739940 TRUE FALSE FALSE 1070441.731 871597.1761 1461970.56 175786.44 925164.5889 938704.3494 828014.9536 691930.8506 1376802.847 554654.2078 1.929926279 1.571424437 2.635823436 0.316929787 1.668002471 1.692413645 1.492848953 1.247499507 2.482272427 1 19.0812291 -5.20962474 24.99999443 1.450021706 1.998293816 0.19961427 0.573970113 638.9436285 308282.127 0.150949319 0.261451643 6.17E-06 5.20962474 0.54827211 HSTPSNSSNPS(ph)GPPS(ph)PNSPHR ddPTM_HeLa_A485_30min_R1 3 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 2 0 HSTPSNSS(0.001)NPS(0.989)GPPS(0.846)PNS(0.163)PHR;HSTPSNSS(0.011)NPS(0.989)GPPS(0.987)PNS(0.013)PHR;HSTPSNSSNPS(0.998)GPPS(1)PNS(0.002)PHR ;; 184.95 3.10E-19 591620000 146096 256117 271969 63818 343260 158199 224477 203638 215142 159204 TRUE FALSE FALSE 178594.5512 286067.6552 372581.6507 67304.21574 309083.8291 166482.055 176515.6551 153695.4612 258319.026 119517.3727 1.494297834 2.393523625 3.11738488 0.563133327 2.586099594 1.392952767 1.476903743 1.285967535 2.161351276 1 16.86686081 -5.252115267 24.99934564 1.547547833 2.340914158 0.260794315 0.643737063 955.7811499 2562587.872 0.168876641 0.28753312 5.60E-06 5.252115267 0.793366326 HSTPSNSSNPS(ph)GPPS(ph)PNSPHR ddPTM_HeLa_A486_30min_R1 2 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 2 0 HSTPSNSSNPS(0.991)GPPS(0.904)PNS(0.104)PHR;HSTPSNSS(0.01)NPS(0.985)GPPS(0.842)PNS(0.163)PHR ; 174.06 2.38E-14 321360000 184809 220300 230300 21050.8 283940 148549 179181 173868 229410 69892 TRUE FALSE FALSE 171854.8435 202842.6257 319478.3276 49007.32625 248325.5976 130222.5347 134348.0186 134282.0519 249295.4435 52390.58828 3.280261763 3.871737889 6.098009932 0.935422332 4.739889467 2.485609324 2.564354076 2.563094944 4.758401303 1 15.67702004 -5.257211745 24.99982635 2.853885946 4.362176484 0.236841324 1.379485051 580.955262 3435427.326 0.362219239 0.600058719 5.53E-06 5.257211745 1.508290539 HSTPSNSSNPSGPPS(ph)PNSPHR ddPTM_HeLa_A485_30min_R1 10 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 1 0 HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPSGPPS(0.999)PNS(0.001)PHR;HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPSGPPS(0.999)PNS(0.001)PHR;HSTPSNSSNPSGPPS(0.99)PNS(0.009)PHR;HSTPSNSSNPSGPPS(0.986)PNS(0.014)PHR;HSTPSNSSNPSGPPS(0.989)PNS(0.01)PHR;HSTPSNSSNPSGPPS(0.999)PNS(0.001)PHR;HSTPSNSSNPS(0.002)GPPS(0.879)PNS(0.119)PHR;HSTPSNSSNPS(0.002)GPPS(0.986)PNS(0.012)PHR ;;;;;;;;; 214.16 1.21E-27 2394328000 333408.2 621979 614737 160817.2 587501.7 614427 456536.1 584978 583171 286648.4 TRUE FALSE FALSE 407573.7038 694714.0336 842153.7976 169602.2364 529007.9679 646597.4476 358993.4327 441511.2283 700208.0705 215192.2293 1.893998242 3.228341637 3.913495392 0.788142941 2.458304232 3.004743479 1.668245335 2.051706188 3.25387247 1 17.71526646 -10.93481314 2.580794933 0.004030888 2.467515558 0.205828252 0.86820014 21292632.89 10487990.55 127582023.2 0.222967391 1.16E-11 10.93481314 2.463484669 HSTPSNSSNPSGPPS(ph)PNSPHR ddPTM_HeLa_A486_30min_R1 11 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 1 0 HSTPSNSSNPSGPPS(0.993)PNS(0.007)PHR;HSTPSNSSNPS(0.005)GPPS(0.97)PNS(0.025)PHR;HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPSGPPS(1)PNSPHR;HSTPSNSSNPS(0.002)GPPS(0.967)PNS(0.031)PHR;HSTPSNSSNPS(0.053)GPPS(0.878)PNS(0.068)PHR;HSTPSNSSNPS(0.014)GPPS(0.807)PNS(0.179)PHR;HSTPSNSSNPS(0.003)GPPS(0.99)PNS(0.007)PHR;HSTPSNSSNPS(0.041)GPPS(0.774)PNS(0.185)PHR;HSTPSNSSNPSGPPS(0.954)PNS(0.046)PHR;HSTPSNSSNPS(0.001)GPPS(0.955)PNS(0.043)PHR ;;;;;;;;;; 226.03 6.14E-36 2029010000 658896.5 787673.1 848517.4 27800.41 1027493.7 508491.8 490388.4 564091 702053 205832.7 TRUE FALSE FALSE 612711.2579 725255.0149 1177086.061 64720.75943 898615.8591 445759.2517 367688.0355 435659.7933 762907.5193 154290.8522 3.971144428 4.700570414 7.629007454 0.419472435 5.824168099 2.889084125 2.383083834 2.823626853 4.944606297 1 17.235293 -5.255522541 24.99783095 3.073836998 5.360273478 0.303214736 1.746324054 651.7721093 2753640.296 0.460539641 0.77139438 5.55E-06 5.255522541 2.28643648 HSTS(ph)PASSEYSWK ddPTM_HeLa_A486_30min_R1 2 HSTSPASSEYSWK 13 0 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 0 HST(0.011)S(0.65)PAS(0.263)S(0.076)EYSWK;HS(0.19)T(0.19)S(0.593)PAS(0.026)SEYSWK ; 210.38 2.15E-22 492890000 939480 1032650 678170 122940 1043740 895130 974100 1006070 859630 696470 TRUE FALSE FALSE 873627.3035 950819.0532 940775.586 286210.533 912824.3967 784697.9616 730369.877 777009.8234 934143.4205 522069.3787 1.673393114 1.821250378 1.802012576 0.548223176 1.748473352 1.50305303 1.398990071 1.488326753 1.789308967 1 18.99388202 HSTSS(ph)LSPQR ddPTM_HeLa_A485_30min_R1 1 HSTSSLSPQR 10 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 HS(0.003)T(0.003)S(0.12)S(0.48)LS(0.394)PQR 67.456 0.0079394 0 18235 34575 30844 11525 25913 22529 20704 32139 21591 22412 TRUE FALSE FALSE 22291.31284 38618.24549 42254.47913 12154.58157 23333.01073 23708.5836 16280.42126 24256.85986 25924.11566 16825.10086 1.324884351 2.29527572 2.511395294 0.72240765 1.386797674 1.40911985 0.967626964 1.441706653 1.540800015 1 14.03832753 -5.258563916 24.99999817 1.233776149 2.068994174 0.513359029 0.371384726 204.9016039 1781457.267 0.101876701 0.166920129 5.51E-06 5.258563916 0.835218024 HSVGFSSS(ph)R ddPTM_HeLa_A485_30min_R1 1 HSVGFSSSR 9 0 E7EUW0;Q9C0I3-2;Q9C0I3 E7EUW0 CCSER1 Serine-rich coiled-coil domain-containing protein 1 1 0 HSVGFSS(0.084)S(0.915)R 74.424 0.011963 476010000 62071 119550 98971 68305 100860 90810 113380 108910 90926 104740 TRUE FALSE FALSE 75878.47981 133530.3326 135584.4914 72036.32919 90818.02426 95564.67118 89155.43677 82199.65174 109174.0142 78630.2456 0.965003724 1.698205716 1.72433 0.916140203 1.155001152 1.215367833 1.133856776 1.045394824 1.388448088 1 16.26279674 -5.263852131 24.9999594 1.12967697 1.4860824 0.317959009 0.227544072 239.505856 2481671.309 0.06234263 0.097571726 5.45E-06 5.263852131 0.35640543 HSVGVVIGR ddPTM_HeLa_A485_30min_R1 1 HSVGVVIGR 9 0 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 0 78.264 0.024144 22640000 4866.3 19324 25294 2541.9 19657 11182 7910.7 10891 14290 3188.1 FALSE FALSE TRUE 5948.791646 21583.7737 34651.30317 2680.757561 17699.88006 11767.47223 6220.514321 8219.965174 17157.87192 2393.365343 2.485534298 9.018169236 14.47806674 1.120078708 7.395394153 4.916705369 2.59906593 3.434479905 7.168931387 1 11.22482492 -5.285693236 24.98611402 4.17706739 8.696350514 0.287904871 3.382934937 989.872412 1019755.847 0.950386501 1.41040941 5.18E-06 5.285693236 4.519283123 HSVTAAT(ph)PPPS(ph)PTSGESGDLLSNLLQSPSSAK ddPTM_HeLa_A485_30min_R1 4 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HSVT(0.01)AAT(0.99)PPPS(0.995)PT(0.003)S(0.002)GESGDLLSNLLQSPSSAK;HS(0.001)VT(0.006)AAT(0.987)PPPS(0.991)PT(0.012)S(0.003)GESGDLLSNLLQSPSSAK;HSVTAAT(1)PPPS(0.981)PT(0.016)S(0.003)GESGDLLSNLLQSPSSAK;HSVTAAT(1)PPPS(0.975)PT(0.014)S(0.011)GESGDLLSNLLQSPSSAK ;;; 295.8 2.13E-92 1760070000 744683 546704 534391 1017680 1009790 538212 983700 743834 701305 1264520 TRUE FALSE FALSE 910335.1642 610636.2771 732084.4688 1073273.281 909251.762 566391.9481 773524.4589 561407.5452 842050.4807 949298.4358 0.958955719 0.643250061 0.771184741 1.130596281 0.957814453 0.596642664 0.814838021 0.591392047 0.887023984 1 19.85650218 -6.234182027 24.97358457 0.754744957 0.885024153 0.097453487 0.165958907 1641.742468 1504189.581 0.055834651 0.055821322 5.83E-07 6.234182027 0.130279196 HSVTAAT(ph)PPPS(ph)PTSGESGDLLSNLLQSPSSAK ddPTM_HeLa_A486_30min_R1 3 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HS(0.002)VT(0.01)AAT(0.987)PPPS(0.888)PT(0.043)S(0.039)GES(0.029)GDLLS(0.001)NLLQSPSSAK;HS(0.001)VT(0.004)AAT(0.995)PPPS(0.594)PT(0.083)S(0.072)GES(0.251)GDLLSNLLQSPSSAK;HSVTAAT(1)PPPS(0.887)PT(0.096)S(0.017)GES(0.001)GDLLSNLLQSPSSAK ;; 254.16 2.85E-63 1000330000 648223 868122 522208 286433 912230 1150710 1247230 1154260 774327 933130 TRUE FALSE FALSE 602785.9151 799328.8511 724420.9228 666830.4995 797809.6072 1008747.1 935159.8621 891460.1953 841446.2878 699468.1743 0.861777472 1.142766577 1.035673887 0.9533393 1.140594578 1.44216297 1.336958416 1.274482854 1.202980091 1 19.41589889 -6.000575147 6.545367224 1.276130906 1.014637964 0.467828965 0.125270465 0.118649156 25.40525946 0.038926806 0.042126528 9.99E-07 6.000575147 -0.261492942 HSVTAAT(ph)PPPSPTSGES(ph)GDLLSNLLQSPSSAK ddPTM_HeLa_A486_30min_R1 1 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HS(0.102)VT(0.121)AAT(0.692)PPPS(0.179)PT(0.171)S(0.161)GES(0.573)GDLLS(0.001)NLLQSPSSAK 86.544 0.0004447 141410000 80854 105210 69877 42467 120420 151150 159200 143550 109180 115820 TRUE FALSE FALSE 75186.55213 96872.77643 96935.24577 98865.32216 105315.8007 132502.6498 119366.4762 110866.7987 118643.8103 86817.91814 0.866025744 1.115815473 1.116535018 1.138766332 1.213065263 1.526213167 1.374905995 1.277003654 1.36658207 1 16.40570521 -4.70404546 0.769008589 1.320654315 0.813209456 0.458639374 0.135708817 1.365066278 0.937310251 0.057450573 0.536678068 1.98E-05 4.70404546 -0.507444859 HSYT(ph)PTTS(ph)RSPQHFHRPDQGINIYR ddPTM_HeLa_A485_30min_R1 2 HSYTPTTSRSPQHFHRPDQGINIYR 25 2 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 2 0 HS(0.012)Y(0.023)T(0.944)PT(0.051)T(0.078)S(0.495)RS(0.397)PQHFHRPDQGINIYR;HS(0.002)Y(0.004)T(0.994)PT(0.011)T(0.034)S(0.537)RS(0.419)PQHFHRPDQGINIYR ; 88.293 0.0032498 647260000 104154 147347 138555 114752 222944 136416 218995 254851 132918 165570 TRUE FALSE FALSE 127322.698 164577.9499 189812.2603 121020.6112 200746.9126 143558.5308 172204.9292 192348.3927 159593.4234 124296.4461 1.024347051 1.32407607 1.527093221 0.973644983 1.615065586 1.15496891 1.385437272 1.547497122 1.283974147 1 16.92342552 -4.263270555 7.042514893 1.332765764 1.020062298 0.138958749 0.209773936 0.182842115 72.1790732 0.048358389 0.276710367 5.45E-05 4.263270555 -0.312703466 HSYT(ph)PTTS(ph)RSPQHFHRPDQGINIYR ddPTM_HeLa_A486_30min_R1 1 HSYTPTTSRSPQHFHRPDQGINIYR 25 2 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 2 0 HS(0.002)Y(0.005)T(0.975)PT(0.026)T(0.04)S(0.546)RS(0.407)PQHFHRPDQGINIYR 123.73 7.25E-06 335130000 49054 45860 44738 13533 86399 52842 71283 71917 44289 48557 TRUE FALSE FALSE 45615.56792 42225.88658 62061.75173 31505.50792 75562.03178 46322.8913 53447.23945 55543.06904 48128.00618 36398.01115 1.253243418 1.160115216 1.705086343 0.865583226 2.075993424 1.272676441 1.468410986 1.525991868 1.322270219 1 15.151572 HT(ph)GEKHFK ddPTM_HeLa_A486_30min_R1 1 HTGEKHFK 8 1 D6RGC2;D6RIY0;A0A087WTY0;Q15928;B4DXR9;Q8TF20;Q8TF20-2 D6RGC2 ZNF721;ZNF141;ZNF732 Zinc finger protein 141;Zinc finger protein 732;Zinc finger protein 721 1 0 HT(1)GEKHFK 73.931 0.0057215 0 207450 188670 123940 127950 305670 153670 196140 133630 64804 85326 TRUE FALSE FALSE 192908.8263 173719.1021 171932.8872 297874.0662 267330.0183 134711.7578 147063.6974 103205.3661 70421.2629 63959.81422 3.016094225 2.716066396 2.688139253 4.657206558 4.179655954 2.106193701 2.299314018 1.613597028 1.101023569 1 15.96487813 -6.874427747 1.416671778 1.198622273 3.387446789 0.669575633 0.655331014 0.293213544 1.169030215 0.475573966 0.252090457 1.34E-07 6.874427747 2.188824516 HT(ph)PELPLAPRPLK ddPTM_HeLa_A485_30min_R1 1 HTPELPLAPRPLK 13 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 HT(1)PELPLAPRPLK 86.378 0.0021471 84644000 91754 89264 64473 139900 114590 70916 110630 84962 68878 165600 TRUE FALSE FALSE 112164.3608 99702.64831 88324.24565 147542.3828 103181.0173 74629.0521 86992.99674 64124.93628 82701.18281 124318.9676 0.902230471 0.801990639 0.710464761 1.186805083 0.82997003 0.600303023 0.699756428 0.515809755 0.665233829 1 16.9236869 -6.109931147 5.613450535 0.66787683 0.89422276 0.250622852 0.163580391 0.293270671 12.7429496 0.053593688 0.053865396 7.76E-07 6.109931147 0.22634593 HTADRWR ddPTM_HeLa_A485_30min_R1 2 HTADRWR 7 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 72.789 0.02413 121985000 21634 60378 37437 13656 46523 52392 69179 122679 32381 23740.9 FALSE FALSE TRUE 26446.40866 67438.68188 51286.50418 14401.9927 41891.00677 55135.16411 54398.34151 92591.7829 38879.56968 17822.73055 1.483858413 3.783858018 2.877589606 0.808068812 2.350425859 3.0935307 3.052188965 5.195151363 2.18145977 1 14.12143076 -6.273092089 5.199597623 3.182537756 2.295739456 0.040917962 1.235376446 0.449140541 39.65807253 0.430626047 0.39726754 5.33E-07 6.273092089 -0.8867983 HTAMVSWGGVSIPNSPFR ddPTM_HeLa_A485_30min_R1 3 HTAMVSWGGVSIPNSPFR 18 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;; ;; 202.34 1.09E-22 218203000 201029 272415 275598 199840 355873 234157 321269 300571 242463 318329 FALSE FALSE TRUE 245747.2075 304271.5646 377553.1688 210756.7532 320441.0346 246417.0984 252627.2536 226855.491 291123.1001 238975.4387 1.028336673 1.273233627 1.579882731 0.881918051 1.340895266 1.031139852 1.057126435 0.94928371 1.218213477 1 17.86650282 -6.059274822 1.187553378 1.04645143 1.249041764 0.141001658 0.187971393 0.872432565 2.571681183 0.086613774 0.093990884 8.72E-07 6.059274822 0.202590334 HTAMVSWGGVSIPNSPFR ddPTM_HeLa_A486_30min_R1 4 HTAMVSWGGVSIPNSPFR 18 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 191.35 1.05E-18 267133000 373336 370976 315026 86667 435996 333978 427402 411097 362928 384762 FALSE FALSE TRUE 347167.0743 341578.5107 437012.5039 201765.1559 381309.3162 292775.19 320461.499 317499.1873 394386.8913 288415.0908 1.203706343 1.184329536 1.515220659 0.699565183 1.322085176 1.015117445 1.111112106 1.100841105 1.367428071 1 18.13778713 -5.206127644 24.99989069 1.099896943 1.289409532 0.203405887 0.191801402 529.5257161 239334.6828 0.049562685 0.085845034 6.22E-06 5.206127644 0.18951259 HTDDEMTGY(ph)VATR ddPTM_HeLa_A485_30min_R1 2 HTDDEMTGYVATR 13 0 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;E7EX54;B4E0K5 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 1 0 HTDDEMT(0.011)GY(0.95)VAT(0.038)R;HTDDEMTGY(1)VATR ; 145.28 7.77E-08 786180000 640740 919570 827410 468590 979520 774960 707050 897960 796720 548200 TRUE FALSE FALSE 783270.4025 1027105.712 1133503.39 494187.8852 881995.5495 815535.7073 555982.9914 677733.9021 956614.3961 411543.8289 1.903249053 2.49573834 2.754271382 1.200814714 2.143138805 1.981649705 1.350969089 1.646808564 2.324453263 1 18.65068656 -8.427810717 0.093723529 7.52E-12 3.136427983 0.306420348 0.455472721 31.26168156 1.386630321 26.64816267 17.61771213 3.73E-09 8.427810717 3.136427983 HTDDEMTGY(ph)VATR ddPTM_HeLa_A486_30min_R1 2 HTDDEMTGYVATR 13 0 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;E7EX54;B4E0K5 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 1 0 HTDDEMTGY(1)VATR;HTDDEMTGY(1)VATR ; 192.65 1.92E-16 1224970000 1036680 1206230 1104380 349440 1532830 1002170 1032090 1133540 1063360 1021580 TRUE FALSE FALSE 964014.0854 1110643.942 1532025.512 813513.9797 1340568.168 878532.4547 773850.1657 875457.687 1155532.901 765769.7186 1.258882484 1.450362837 2.000634754 1.062348066 1.750615277 1.147254107 1.010552059 1.143238843 1.508982234 1 19.54655109 -6.29161892 23.63601687 1.161491908 1.504548669 0.285104511 0.271224534 478.2183416 374529.0471 0.09357945 0.082543461 5.11E-07 6.29161892 0.343056762 HTENTFSRPGGR ddPTM_HeLa_A485_30min_R1 4 HTENTFSRPGGR 12 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 0 0 ;;; ;;; 127.17 0.00012796 251052000 16932.1 18780.2 17227.1 15416.6 24311.8 18248.1 18366.8 21160.2 18365.5 18128.2 FALSE FALSE TRUE 20698.58723 20976.38102 23600.12117 16258.76982 21891.23183 19203.5423 14442.58314 15970.62777 22051.28739 13609.17336 1.520929058 1.541341304 1.734133333 1.194691947 1.608564403 1.411073383 1.061238824 1.173519313 1.620325262 1 13.73229182 -6.551948459 8.47714614 1.228677645 1.514538937 0.343766562 0.199223409 0.294566931 75.51947637 0.074640919 0.058121062 2.81E-07 6.551948459 0.285861292 HTENTFSRPGGR ddPTM_HeLa_A486_30min_R1 2 HTENTFSRPGGR 12 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 0 0 ; ; 109.24 0.0015499 129932000 4987.9 7120.2 5836.7 778.35 8710 8612 9240.3 8442.3 6120.8 7382.8 FALSE FALSE TRUE 4638.273968 6555.969421 8096.826552 1812.038136 7617.510582 7549.539 6928.279206 6520.172584 6651.355872 5534.098826 0.838126335 1.184649864 1.463079502 0.327431474 1.376468116 1.364185794 1.251925458 1.178181451 1.201885995 1 12.43413269 HTENTFSRPGGRAS(ph)VDTK ddPTM_HeLa_A485_30min_R1 2 HTENTFSRPGGRASVDTK 18 2 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 HT(0.007)ENT(0.003)FS(0.112)RPGGRAS(0.878)VDTK;HTENTFS(0.003)RPGGRAS(0.997)VDTK ; 98.002 0.00019 581470000 171511 201304 151385 170246 334810 216348 341090 400020 186954 296620 TRUE FALSE FALSE 209663.0302 224844.7517 207388.6112 179546.1079 301475.1408 227675.6467 268213.3351 301914.4678 224473.953 222678.0929 0.941552119 1.009730004 0.931338186 0.80630342 1.353860799 1.022442952 1.204489097 1.355833723 1.008064826 1 17.76460011 -5.752601828 24.99990629 1.170842007 0.929131394 0.438663956 0.129729634 174.5588334 493794.3281 0.03722995 0.047330176 1.77E-06 5.752601828 -0.241710613 HTENTFSRPGGRAS(ph)VDTK ddPTM_HeLa_A486_30min_R1 2 HTENTFSRPGGRASVDTK 18 2 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 HT(0.002)ENT(0.001)FS(0.021)RPGGRAS(0.976)VDTK;HT(0.001)ENT(0.007)FS(0.002)RPGGRAS(0.99)VDTK ; 83.395 0.00083018 329960000 191636 178425 146821 92338 342830 234780 354570 339890 155306 257060 TRUE FALSE FALSE 178203.306 164285.9532 203674.0232 214967.5305 299829.0646 205815.2307 265852.8357 262504.4667 168768.0491 192690.5028 0.924816238 0.852589779 1.057000839 1.115610408 1.556013712 1.068112998 1.379688318 1.36231139 0.875850375 1 17.55592594 -5.106012736 2.312750966 1.229580508 0.892143834 0.279991834 0.190976242 0.345346585 3.600054154 0.054024373 0.118404607 7.83E-06 5.106012736 -0.337436674 HTGMASIDSSAPETTSDSS(ph)PTLSR ddPTM_HeLa_A485_30min_R1 3 HTGMASIDSSAPETTSDSSPTLSR 24 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 HTGMASIDSSAPETT(0.011)S(0.001)DS(0.021)S(0.745)PT(0.212)LS(0.009)R;HTGMASIDSSAPETTS(0.001)DS(0.008)S(0.991)PT(0.001)LSR;HTGMASIDSSAPETT(0.003)S(0.07)DS(0.207)S(0.615)PT(0.098)LS(0.006)R ;; 262.77 1.32E-61 1477380000 269711 381402 428872 275355 542146 302580 453428 434672 392090 458571 TRUE FALSE FALSE 329707.2815 426003.6461 587529.5997 290396.9464 488168.0406 318422.6209 356549.4036 328068.0105 470778.8665 344257.6891 0.957733965 1.237455719 1.706656433 0.843545273 1.4180309 0.924954274 1.035704982 0.952972209 1.367518814 1 18.39312935 -6.271732646 24.9328585 1.052008011 1.237662466 0.112134091 0.24792034 1568.484541 3799249.969 0.085363271 0.076131621 5.35E-07 6.271732646 0.185654454 HTGMASIDSSAPETTSDSS(ph)PTLSR ddPTM_HeLa_A486_30min_R1 4 HTGMASIDSSAPETTSDSSPTLSR 24 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 HTGMASIDSSAPETTS(0.001)DS(0.058)S(0.936)PT(0.004)LSR;HTGMASIDSSAPETT(0.002)S(0.009)DS(0.013)S(0.974)PT(0.002)LSR;HTGMASIDSSAPETTSDS(0.005)S(0.994)PTLSR;HTGMASIDSSAPETTS(0.004)DS(0.06)S(0.935)PTLSR ;;; 290.75 2.97E-89 2025350000 813740 865570 693350 60621 987870 763360 861550 804800 814870 638540 TRUE FALSE FALSE 756701.0282 796979.0808 961833.6886 141128.7516 863962.1331 669184.4045 645981.0775 621564.6087 885503.5877 478645.4278 1.580921877 1.66507196 2.009491019 0.294850308 1.805014909 1.398079592 1.349602524 1.298590925 1.850019944 1 18.8685978 HTGPGILSMANAGPNTNGSQFFICTAK ddPTM_HeLa_A485_30min_R1 6 HTGPGILSMANAGPNTNGSQFFICTAK 27 0 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;;;; ;;;;; 361.4 2.41E-155 755812000 346239.1 287437.9 265833.8 358973.1 420215 473678.3 705967 771817 266573.6 538141 FALSE FALSE TRUE 423258.7933 321051.262 364176.7849 378582.8915 378376.9191 498479.3633 555131.3832 582527.6706 320072.4764 403992.3525 1.047690113 0.794696385 0.901444749 0.937104104 0.936594262 1.233883167 1.374113594 1.44192747 0.792273602 1 18.62396846 -6.239156714 6.920929555 1.209124493 0.915031685 0.298282085 0.182394623 0.200548905 42.61061061 0.060611376 0.059069667 5.77E-07 6.239156714 -0.294092808 HTGPGILSMANAGPNTNGSQFFICTAK ddPTM_HeLa_A486_30min_R1 5 HTGPGILSMANAGPNTNGSQFFICTAK 27 0 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;;; ;;;; 374.44 5.56E-156 813933000 233976 452638 325868 118140 571600 588246 676605 615807 536802 657498 FALSE FALSE TRUE 217575.4907 416769.3164 452052.8166 275035.8905 499904.598 515674.1894 507311.2726 475601.1891 583332.4296 492856.2212 0.441458343 0.845620484 0.917210329 0.558044879 1.014301081 1.046297413 1.029329145 0.964989724 1.183575259 1 18.91080731 -5.838487625 8.066343079 1.039454601 0.718385177 0.608357916 0.136576359 0.187028132 17.18199386 0.042068206 0.047834831 1.45E-06 5.838487625 -0.321069424 HTGPNS(ph)PDTANDGFVR ddPTM_HeLa_A485_30min_R1 7 HTGPNSPDTANDGFVR 16 0 P55795;E5RGV0;E5RGH4;H0YAQ2;E7EQJ0;G8JLB6;P31943;E9PCY7;D6RBM0;D6RIT2;D6RAM1;D6R9T0;D6RFM3;D6RIU0;D6RDU3;D6RJ04;D6RIH9 P55795;E7EQJ0;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(0.994)PDT(0.006)ANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(0.701)PDT(0.299)ANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR ;;;;;; 315.93 2.63E-78 17485340000 2588488 3728410 3279610 3123548 4401890 3448820 4815520 4962180 3043629 4312934 TRUE FALSE FALSE 3164288.225 4164415.117 4492874.215 3294179.518 3963622.376 3629394.882 3786644.813 3745197.575 3654457.422 3237798.927 0.977296088 1.28618707 1.387632251 1.017413246 1.224171872 1.120945112 1.169512035 1.156710981 1.128685723 1 21.62658196 -9.21797535 0.366081957 0.958135041 1.190803374 0.163331791 0.11278933 10.85254021 1.74826279 0.726827328 0.091547836 6.05E-10 9.21797535 0.232668333 HTGPNS(ph)PDTANDGFVR ddPTM_HeLa_A486_30min_R1 6 HTGPNSPDTANDGFVR 16 0 P55795;E5RGV0;E5RGH4;H0YAQ2;E7EQJ0;G8JLB6;P31943;E9PCY7;D6RBM0;D6RIT2;D6RAM1;D6R9T0;D6RFM3;D6RIU0;D6RDU3;D6RJ04;D6RIH9 P55795;E7EQJ0;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 HTGPNS(1)PDTANDGFVR;HTGPNS(0.999)PDTANDGFVR;HT(0.009)GPNS(0.991)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR ;;;;; 195.46 2.21E-18 17738080000 3213171 4262810 3593340 1307841 5016740 3840210 4433327 4484950 3931610 4287151 TRUE FALSE FALSE 2987944.306 3925009.411 4984777.481 3044719.943 4387493.69 3366443.935 3324061.694 3463824.791 4272405.12 3213620.485 0.929775099 1.221366813 1.551140685 0.947442287 1.365280596 1.047554915 1.0343666 1.077857453 1.329467851 1 21.61576813 -6.325000475 24.99979907 1.098747773 1.209167291 0.071171542 0.189264636 633.0897286 249003.7828 0.066084461 0.058281023 4.73E-07 6.325000475 0.110419518 HTGPNS(ph)PDTANDGFVRL ddPTM_HeLa_A485_30min_R1 5 HTGPNSPDTANDGFVRL 17 1 E7EQJ0 E7EQJ0 HNRNPH1 1 0 HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL ;;;; 305.34 2.57E-69 3812890000 736702 2192870 1603900 820009 2137350 597165 806354 658050 1825380 1155210 TRUE FALSE FALSE 900578.8183 2449307.071 2197249.354 864804.0153 1924547.929 628431.636 634069.8806 496662.2057 2191717.023 867237.4071 1.038445541 2.824263634 2.53361921 0.997194088 2.219170799 0.724636219 0.731137605 0.57269463 2.527239952 1 19.72606746 -5.772714463 1.418226197 1.109198674 2.114655899 0.178802273 0.766781717 0.624442221 2.622093792 0.292130533 0.401985043 1.69E-06 5.772714463 1.005457225 RNFGVS(ph)QER ddPTM_HeLa_A486_30min_R1 1 RNFGVSQER 9 1 E7EPB1;E7EQS8;Q6N021-2;Q6N021-3;Q6N021 E7EPB1 TET2 Methylcytosine dioxygenase TET2 1 0 RNFGVS(1)QER 87.308 0.0023515 685390000 703750 460890 407760 135810 492040 253390 290100 191900 143500 158640 TRUE FALSE FALSE 654420.7592 424367.3979 565655.5922 316172.5435 430323.7551 222129.3181 217513.9116 148208.5591 155938.6955 118915.5114 5.503241346 3.568646283 4.756785598 2.658799846 3.618735268 1.867959154 1.829146669 1.24633496 1.311340242 1 16.85957739 -5.632726087 0.44887523 0.852059031 5.644702027 0.856451725 0.562706806 0.567037255 0.200632349 0.466542982 1.282222338 2.33E-06 5.632726087 4.792642996 up HTGPNSPDT(ph)ANDGFVR ddPTM_HeLa_A486_30min_R1 1 HTGPNSPDTANDGFVR 16 0 P55795;E5RGV0;E5RGH4;H0YAQ2;E7EQJ0;G8JLB6;P31943;E9PCY7;D6RBM0;D6RIT2;D6RAM1;D6R9T0;D6RFM3;D6RIU0;D6RDU3;D6RJ04;D6RIH9 P55795;E7EQJ0;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 HTGPNS(0.499)PDT(0.501)ANDGFVR 325.5 1.17E-78 823880000 415710 501160 405750 157930 555880 411930 510210 527770 472800 552220 TRUE FALSE FALSE 386570.8757 461446.2564 562867.2664 367669.0213 486156.347 361110.2648 382550.0615 407608.2921 513782.6847 413940.5177 0.933880254 1.11476465 1.359778138 0.88821704 1.174459436 0.872372356 0.924166747 0.984702571 1.241199309 1 18.65906394 -5.303877608 24.99903523 1.008793932 1.134004305 0.13083697 0.146225909 962.504524 566979.0827 0.041345473 0.061325559 4.97E-06 5.303877608 0.125210373 HTGPNSPDTANDGFVR ddPTM_HeLa_A485_30min_R1 1 HTGPNSPDTANDGFVR 16 0 P55795;E5RGV0;E5RGH4;H0YAQ2;E7EQJ0;G8JLB6;P31943;E9PCY7;D6RBM0;D6RIT2;D6RAM1;D6R9T0;D6RFM3;D6RIU0;D6RDU3;D6RJ04;D6RIH9 P55795;E7EQJ0;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 136.39 9.22E-06 0 9419.2 18594 20804 6570.1 19324 14467 12681 14813 17313 12063 FALSE FALSE TRUE 11514.46854 20768.40655 28500.26533 6929.007927 17400.03471 15224.46975 9971.600756 11180.08852 20787.5603 9055.916103 1.271485779 2.293352359 3.14714326 0.765136056 1.921399725 1.681162853 1.101114525 1.234561849 2.295467411 1 13.14464488 -5.27111381 24.99980897 1.455615293 2.242929689 0.275715388 0.59965902 894.3950414 2311215.155 0.167472511 0.251984908 5.36E-06 5.27111381 0.787314396 HTIAVVWGGVNIPHSPYR ddPTM_HeLa_A485_30min_R1 2 HTIAVVWGGVNIPHSPYR 18 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 168.69 9.33E-15 273670000 138381 212777 180424 183594 211371 124882 225086 218890 136999 244270 FALSE FALSE TRUE 169163.376 237659.4192 247170.3457 193623.2753 190326.1611 131420.6284 176994.5373 165206.8843 164493.4427 183377.9845 0.922484651 1.29600846 1.347873609 1.055869798 1.037889917 0.716665246 0.965189676 0.900909042 0.89701849 1 17.48446092 -5.763032057 2.398396808 0.895724466 1.19506916 0.465473965 0.130613651 0.237020954 2.795544318 0.042854308 0.054430134 1.73E-06 5.763032057 0.299344694 HTIAVVWGGVNIPHSPYR ddPTM_HeLa_A486_30min_R1 2 HTIAVVWGGVNIPHSPYR 18 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 150.91 3.75E-10 192404000 148606 134201 121128 73366 170997 113754 196282 173843 133286 180072 FALSE FALSE TRUE 138189.4868 123566.424 168032.0055 170799.7557 149548.9618 99720.18805 147170.1675 134262.7439 144839.3378 134980.7991 1.023771438 0.915437046 1.244858577 1.265363347 1.107927666 0.738773134 1.090304462 0.994680316 1.0730366 1 17.04239467 -6.044954176 24.99992928 0.97900383 1.117617716 0.206472953 0.129356301 754.678166 419690.0875 0.045177656 0.045180009 9.02E-07 6.044954176 0.138613886 HTIIPAKS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 HTIIPAKSPEK 11 1 Q9NZM1-5;Q9NZM1-2;Q9NZM1-6;Q9NZM1-3;Q9NZM1 Q9NZM1-5 MYOF Myoferlin 1 0 HTIIPAKS(1)PEK 71.344 0.007573 163040000 290670 156300 62017 617370 157900 181240 447390 318610 134780 1247200 TRUE FALSE FALSE 355328.5387 174577.9254 84959.66904 651095.3598 142178.9216 190729.4461 351801.4717 240470.3979 161829.1097 936295.993 0.379504496 0.186455914 0.090740182 0.695394795 0.151852537 0.203706357 0.375737453 0.2568316 0.172839691 1 19.83660516 -10.17351684 3.488931748 1.000938582 0.279409055 0.633543744 0.164452717 41912029.29 67257468.37 437809.7711 0.042173298 6.71E-11 10.17351684 -0.721529527 HTLGDS(ph)DNES ddPTM_HeLa_A485_30min_R1 10 HTLGDSDNES 10 0 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 HTLGDS(1)DNES;HTLGDS(0.981)DNES(0.019);HTLGDS(0.999)DNES(0.001);HTLGDS(1)DNES;HTLGDS(1)DNES;HTLGDS(1)DNES;HTLGDS(0.995)DNES(0.004);HTLGDS(1)DNES;HT(0.002)LGDS(0.997)DNES(0.002);HTLGDS(0.996)DNES(0.004) ;;;;;;;;; 178.76 1.76E-09 52452946000 20641460 23400930 22130790 25776270 27083330 19014790 28504070 21127100 20550060 35749000 TRUE FALSE FALSE 25233081.56 26137465.2 30317890.16 27184362.36 24386818.57 20010375 22413942.59 15945645.6 24674268.55 26837432.21 0.940219667 0.973918257 1.129686697 1.012927099 0.908686732 0.745614366 0.835174633 0.594156903 0.919397517 1 24.67774331 -5.977245832 3.157466751 0.79513188 1.019176629 0.398156348 0.110875409 0.221554589 4.571304623 0.036106037 0.039766512 1.05E-06 5.977245832 0.224044749 HTLGDS(ph)DNES ddPTM_HeLa_A486_30min_R1 11 HTLGDSDNES 10 0 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 HTLGDS(1)DNES;HTLGDS(1)DNES;HTLGDS(1)DNES;HTLGDS(1)DNES;HT(0.018)LGDS(0.982)DNES;HT(0.016)LGDS(0.983)DNES(0.001);HT(0.011)LGDS(0.989)DNES;HT(0.001)LGDS(0.999)DNES;HT(0.001)LGDS(0.999)DNES;HTLGDS(0.998)DNES(0.002);HTLGDS(0.996)DNES(0.004) ;;;;;;;;;; 242.3 5.65E-21 66328230000 25847380 32362380 24195740 9105224 30960460 29728660 32252590 31053750 29859530 33762920 TRUE FALSE FALSE 24035612.14 29797867.15 33564978.51 21197421.62 27077110.41 26061040.19 24182650.85 23983489.02 32447778.1 25308465.07 0.949706435 1.177387371 1.32623525 0.837562514 1.069883548 1.029736103 0.955516298 0.947646922 1.282091901 1 24.59311668 -5.260092268 24.99999637 1.015420618 1.153737439 0.167360476 0.136484912 215.616718 4001419.074 0.037201091 0.06031609 5.49E-06 5.260092268 0.138316821 HTLGDSDNES(ph) ddPTM_HeLa_A485_30min_R1 1 HTLGDSDNES 10 0 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 HTLGDS(0.056)DNES(0.944) 127.17 0.00010167 9099200000 6987100 7681700 7622100 8904700 8736900 6608000 9741400 6985100 7341000 12367000 TRUE FALSE FALSE 8541356.29 8580007.993 10441831.97 9391141.213 7867023.559 6953984.662 7660070.31 5271993.273 8814271.364 9284134.498 0.919994889 0.924158089 1.124696327 1.011525761 0.847362084 0.749018087 0.825071019 0.567849731 0.949390745 1 23.14633599 -5.864936707 4.073217052 0.792359254 0.999332667 0.312422292 0.122205152 0.232286603 7.073458442 0.037908069 0.043889416 1.36E-06 5.864936707 0.206973414 HTNPS(ph)SSSPGTRT ddPTM_HeLa_A485_30min_R1 2 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 0 HTNPS(0.617)S(0.128)S(0.128)S(0.128)PGTRT;HTNPS(0.396)S(0.1)S(0.396)S(0.108)PGTRT ; 131.35 5.12E-05 161917000 142188 232297 212027 138912 281030 196921 240795 302680 185132 229619 TRUE FALSE FALSE 173817.2301 259462.1134 290464.6105 146500.4108 253049.6664 207231.4791 189347.1811 228447.2554 222286.2943 172379.2091 1.008342195 1.505182178 1.685032737 0.849872856 1.467982524 1.202183721 1.098433982 1.325259911 1.289519168 1 17.39522625 -5.248491853 24.98535495 1.19973401 1.410085292 0.163489295 0.226798746 1494.725186 2884424.676 0.06022245 0.103480269 5.64E-06 5.248491853 0.210351282 HTNPS(ph)SSSPGTRT ddPTM_HeLa_A486_30min_R1 1 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 0 HTNPS(0.279)S(0.279)S(0.279)S(0.162)PGTRT 85.554 0.0057803 26486000 63197 60937 52212 7798.8 78830 54290 65372 62900 54064 52071 TRUE FALSE FALSE 58767.21665 56108.13019 72429.88469 18156.00053 68942.40634 47592.25178 49015.23417 48579.0431 58750.31105 39032.08267 1.505613142 1.437487481 1.855650012 0.465155823 1.766300992 1.219311103 1.25576784 1.244592647 1.505180022 1 15.25237282 -1.000000385 0.030849508 1.43E-08 3.272507761 0.087201617 0.360208958 3585.031139 8.494884328 283.7228026 704.8264217 0.099999911 1.000000385 3.272507747 HTNPSSS(ph)SPGTRT ddPTM_HeLa_A485_30min_R1 2 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 0 HTNPS(0.008)S(0.06)S(0.466)S(0.466)PGTRT;HTNPS(0.118)S(0.076)S(0.504)S(0.302)PGTRT ; 129.17 6.22E-05 59775000 102758 154044 145692 100882 181002 147178 179662 204200 120065 150357 TRUE FALSE FALSE 125616.1626 172058.1058 199589.5335 106392.9282 162980.8053 154884.0125 141275.746 154119.6298 144160.9442 112875.767 1.112870955 1.524313946 1.768223055 0.942566602 1.443895441 1.372163544 1.251603863 1.365391651 1.277164692 1 16.78437627 -12.89048423 0.208085918 2.10E-08 1.406394861 0.193857298 0.211528121 142.5174697 2.151379209 60.22893344 0.475186439 1.29E-13 12.89048423 1.40639484 HTNPSSSS(ph)PGTRT ddPTM_HeLa_A486_30min_R1 2 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 0 HTNPSSS(0.029)S(0.967)PGT(0.003)RT(0.001);HTNPS(0.026)S(0.026)S(0.145)S(0.803)PGTRT ; 119.87 0.00025945 220161000 359780 381080 361840 47641 496450 331480 386320 399220 341040 322840 TRUE FALSE FALSE 334561.2799 350881.8329 501954.1384 110910.6556 434180.6118 290585.3678 289658.6499 308326.3209 370601.6218 241998.7627 1.382491696 1.449932343 2.07420126 0.458310838 1.794143933 1.200772122 1.19694269 1.274082221 1.53141949 1 17.88464015 -9.483549688 0.044713611 2.06E-09 2.320329094 0.073080872 0.400776749 593.0658738 6.34592533 199.8757 131.370001 3.28E-10 9.483549688 2.320329092 HTNYTMEHIR ddPTM_HeLa_A485_30min_R1 13 HTNYTMEHIR 10 0 O43707;O43707-2;F5GXS2;O43707-3;A0A494C1A0;P35609;P35609-2;H7C144;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H7C5W8;H0YJW3 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 0 ;;;;;;;;;;;; ;;;;;;;;;;;; 180.66 3.07E-09 3646585800 369264.8 407903.2 446410.8 406333.1 558782.7 355143.5 493402.3 406139.7 423232.5 554393.3 FALSE FALSE TRUE 451406.4808 455603.931 611556.7316 428530.0484 503148.3324 373738.2645 387982.8679 306533.3018 508171.3806 416193.2532 1.084607877 1.094693216 1.469405683 1.029641987 1.208929574 0.897992127 0.932218062 0.736516749 1.220998603 1 18.66689405 -6.259495753 24.89938477 0.93949446 1.180865334 0.323338805 0.157950505 186.8442757 2393627.17 0.052237158 0.049765941 5.50E-07 6.259495753 0.241370874 HTNYTMEHIR ddPTM_HeLa_A486_30min_R1 10 HTNYTMEHIR 10 0 O43707;O43707-2;F5GXS2;O43707-3;A0A494C1A0;P35609;P35609-2;H7C144;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H7C5W8;H0YJW3 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 0 ;;;;;;;;; ;;;;;;;;; 190.26 1.26E-09 2563693900 322148.3 326681.2 294450.9 113863.29 426158.7 336869.1 367050 361320.9 299936.4 337565.6 FALSE FALSE TRUE 299567.3677 300793.792 408470.1741 265079.4935 372705.9021 295309.6155 275210.2077 279056.0186 325935.1286 253036.9766 1.183887714 1.188734532 1.614270688 1.047591925 1.472930586 1.167061113 1.087628423 1.102827035 1.288092883 1 17.9489887 -6.50012971 23.51220238 1.128082928 1.300641788 0.224006486 0.162024179 563.026114 581915.6292 0.05509403 0.048173768 3.16E-07 6.50012971 0.172558861 HTPPTIGGS(ph)LPYR ddPTM_HeLa_A485_30min_R1 6 HTPPTIGGSLPYR 13 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;E9PEZ7;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR ;;;;; 193.3 7.41E-18 2869560000 1124323 1409750 1340720 1198101 1828190 1232756 1737240 1620510 1287820 1556070 TRUE FALSE FALSE 1374424.772 1574607.999 1836708.12 1263550.224 1646168.984 1297301.198 1366064.482 1223077.382 1546273.661 1168170.386 1.176561903 1.347926653 1.572294711 1.081648909 1.409185684 1.110541076 1.169405164 1.047002557 1.323671341 1 20.15581929 -6.274199834 24.5731988 1.135516747 1.320262437 0.291300735 0.145997638 830.1969789 1598730.311 0.049830727 0.044239522 5.32E-07 6.274199834 0.18474569 HTPPTIGGS(ph)LPYR ddPTM_HeLa_A486_30min_R1 7 HTPPTIGGSLPYR 13 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;E9PEZ7;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 HTPPTIGGS(0.977)LPY(0.023)R;HTPPTIGGS(0.987)LPY(0.013)R;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR;HTPPTIGGS(1)LPYR ;;;;;; 229.02 6.36E-28 3995840000 1333730 1570230 1478120 493097 1954620 1410540 1687500 1612430 1378410 1563590 TRUE FALSE FALSE 1240242.414 1445799.256 2050487.649 1147954.736 1709453.333 1236521.916 1265269.651 1245314.888 1497891.689 1172056.887 1.058175954 1.233557238 1.749477924 0.979436023 1.458507136 1.055001622 1.079529215 1.062503793 1.278002549 1 20.16061116 -6.284349997 24.65784124 1.097946519 1.299996351 0.186832979 0.209347297 1191.341842 1282192.078 0.07255752 0.064037344 5.20E-07 6.284349997 0.202049832 HTPS(ph)PGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ddPTM_HeLa_A485_30min_R1 4 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 HT(0.155)PS(0.845)PGLPAEGAPEAPRPS(0.521)S(0.479)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HT(0.201)PS(0.799)PGLPAEGAPEAPRPS(0.514)S(0.487)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HT(0.189)PS(0.811)PGLPAEGAPEAPRPS(0.558)S(0.442)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HT(0.178)PS(0.818)PGLPAEGAPEAPRPS(0.517)S(0.487)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ;;; 131.34 3.07E-12 1070796000 13588.4 16832.2 20187.9 14992.2 18079.3 19285.5 22199.5 29792.3 14568.2 20416.4 TRUE FALSE FALSE 16611.0927 18800.57937 27656.2443 15811.18592 16279.26141 20295.25896 17456.39547 22485.69171 17491.90411 15326.96722 1.083782099 1.226634017 1.804417267 1.031592598 1.062131939 1.324153609 1.138933438 1.467067254 1.141250181 1 13.90378464 -8.001729052 24.96617964 0.999999964 1.269134914 0.129956482 0.21934504 102.904378 1485888.753 0.213129583 0.055029822 9.96E-09 8.001729052 0.269134951 HTPS(ph)PGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ddPTM_HeLa_A486_30min_R1 6 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 HT(0.184)PS(0.815)PGLPAEGAPEAPRPS(0.507)S(0.491)PPPEVLEPHS(0.001)LDQPPATSPRPLIEVGELLDLTR;HT(0.036)PS(0.964)PGLPAEGAPEAPRPS(0.53)S(0.47)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HT(0.182)PS(0.818)PGLPAEGAPEAPRPS(0.488)S(0.472)PPPEVLEPHS(0.024)LDQPPAT(0.006)S(0.006)PRPLIEVGELLDLT(0.005)R;HT(0.172)PS(0.828)PGLPAEGAPEAPRPS(0.497)S(0.48)PPPEVLEPHS(0.022)LDQPPAT(0.001)S(0.001)PRPLIEVGELLDLTR;HT(0.171)PS(0.829)PGLPAEGAPEAPRPS(0.516)S(0.484)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HT(0.196)PS(0.804)PGLPAEGAPEAPRPS(0.508)S(0.482)PPPEVLEPHS(0.01)LDQPPATSPRPLIEVGELLDLTR ;;;;; 177.06 2.43E-20 1515394000 23861.7 23284.5 22149.82 10434.53 29261.17 21512.3 27320.7 29433.9 26310.2 25669.3 TRUE FALSE FALSE 22189.11805 21439.35142 30726.8235 24292.11317 25590.96121 18858.33115 20484.77189 22732.44351 28590.78932 19241.5402 1.153188249 1.114222209 1.596900413 1.26248278 1.329985071 0.980084284 1.064611859 1.181425357 1.485888813 1 14.23193666 -6.206949515 24.99747689 1.148878611 1.296885701 0.147418955 0.178520405 667.5230757 306228.8945 0.061034671 0.061034648 6.21E-07 6.206949515 0.148007091 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_HeLa_A485_30min_R1 1 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPR 84.272 0.00013199 364650000 8440.3 8238.6 17741 15622 21428 14843 18759 17818 13799 24265 TRUE FALSE FALSE 10317.81562 9202.032604 24304.13416 16475.3903 19294.55308 15620.15653 14750.9864 13448.10756 16568.33273 18216.18206 0.566409338 0.50515704 1.334205712 0.904437068 1.05919852 0.857487945 0.809773769 0.738250612 0.909539259 1 14.152933 -4.706594335 24.99994797 0.935995092 0.535780316 0.531016842 0.155761955 73.27898069 33401.40404 0.040914864 0.108250437 1.97E-05 4.706594335 -0.400214775 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_HeLa_A486_30min_R1 2 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPR;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPR ; 234.43 5.81E-52 661520000 72601 79018 57374 9591.6 80902 77504 86447 81025 77497 78361 TRUE FALSE FALSE 67512.04481 72756.3259 79590.74933 22329.72953 70754.51678 67942.34448 64817.04626 62577.37626 84214.50236 58738.89556 1.149358431 1.238639665 1.354992268 0.380152356 1.204559877 1.156684065 1.103477443 1.065348193 1.433709326 1 15.84202852 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ddPTM_HeLa_A485_30min_R1 4 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HTPSPGLPAEGAPEAPRPS(0.356)S(0.356)PPPEVLEPHS(0.074)LDQPPAT(0.074)S(0.074)PRPLIEVGELLDLT(0.068)R;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HTPSPGLPAEGAPEAPRPS(0.495)S(0.495)PPPEVLEPHS(0.009)LDQPPATSPRPLIEVGELLDLTR;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ;;; 121.25 2.36E-10 4226960000 149071 203007 195340 135357.2 261026 208033 271714 301430 201918 218586 TRUE FALSE FALSE 182231.3297 226746.9027 267604.3948 142751.4211 235037.3349 218925.2862 213660.0842 227503.8199 242441.0905 164096.533 1.110512979 1.381789722 1.630774215 0.869923444 1.4323114 1.334124995 1.302038991 1.386402356 1.477429694 1 17.32418523 -4.251319361 23.27126198 1.324998743 1.110512667 0.073264055 0.211795567 1406.541814 3234204.492 0.050355058 0.623695052 5.61E-05 4.251319361 -0.214486076 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ddPTM_HeLa_A486_30min_R1 2 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HTPS(0.001)PGLPAEGAPEAPRPS(0.499)S(0.499)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR;HTPSPGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR ; 144.34 1.00E-14 661250000 73102 68271 54899 17233 83889 65218 80758 79865 63367 70186 TRUE FALSE FALSE 67977.9273 62860.95732 76157.36305 40119.29491 73366.85939 57172.06625 60551.49423 61681.48294 68859.70258 52610.96877 1.292086591 1.194826075 1.447556752 0.762565219 1.394516412 1.086694801 1.150929087 1.172407283 1.308846885 1 15.683076 HTPSPGLPAEGAPEAPRPSS(ph)PPPEVLEPHS(ph)LDQPPATSPRPLIEVGELLDLTR ddPTM_HeLa_A486_30min_R1 1 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTR 53 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 HTPSPGLPAEGAPEAPRPS(0.488)S(0.511)PPPEVLEPHS(0.413)LDQPPAT(0.3)S(0.287)PRPLIEVGELLDLT(0.001)R 49.156 0.0022717 42410000 5278.1 5638.1 6126.1 2011 7366.6 4847.3 6737.1 5343.3 6349.5 5840.3 TRUE FALSE FALSE 4908.132446 5191.316422 8498.289983 4681.70963 6442.612337 4249.28941 5051.406322 4126.747233 6899.879772 4377.850866 1.121128288 1.185813903 1.941201343 1.069408204 1.471638147 0.97063366 1.153855277 0.94264226 1.576088356 1 12.09600709 -6.254112915 24.77180231 1.126634761 1.364666281 0.140882679 0.282716713 1022.905836 3458590.201 0.092624532 0.090815782 5.57E-07 6.254112915 0.23803152 HTQSMS(ph)SARER ddPTM_HeLa_A485_30min_R1 1 HTQSMSSARER 11 1 K7EJR8;B5MDG7;Q9P0W2-2;Q9P0W2-3;Q9P0W2 K7EJR8 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related 1 0 HT(0.049)QS(0.049)MS(0.451)S(0.451)ARER 62.528 0.012102 2113800000 361250 649400 700310 154990 710190 545680 477260 643150 639050 201590 TRUE FALSE FALSE 441608.8162 725341.681 959383.8113 163456.7112 639480.99 574250.961 375289.5021 485416.4541 767301.4733 151337.323 2.918043001 4.792880346 6.339373476 1.080081952 4.225533909 3.794509839 2.479821202 3.207513153 5.070140387 1 17.20740831 -10.83805114 2.717480212 0.000240048 3.754217816 0.261228101 1.39608123 39458559.98 22196269.17 255058144 0.358133404 1.45E-11 10.83805114 3.753977768 HTQSMS(ph)SARER ddPTM_HeLa_A486_30min_R1 1 HTQSMSSARER 11 1 K7EJR8;B5MDG7;Q9P0W2-2;Q9P0W2-3;Q9P0W2 K7EJR8 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related 1 0 HT(0.006)QS(0.009)MS(0.493)S(0.493)ARER 81.565 0.0029904 569830000 377370 360080 583410 12954 573320 353490 230110 294090 495290 107470 TRUE FALSE FALSE 350918.3117 331545.9494 809321.9763 30157.56666 501408.8596 309879.9978 172534.0441 227132.1269 538222.136 80558.81249 4.356051199 4.115576424 10.04634938 0.374354658 6.224134196 3.846630657 2.141715336 2.819457238 6.681108117 1 16.2977548 -5.275904245 24.99973161 3.470589348 5.96695132 0.225108291 2.420233396 1305.439517 2256197.423 0.664326262 0.990302933 5.30E-06 5.275904245 2.496361971 HTTENKPHS(ph)PKTPEPR ddPTM_HeLa_A485_30min_R1 1 HTTENKPHSPKTPEPR 16 2 A0A2R8Y6S3;C9J167;P54278-3;P54278;Q68D20 A0A2R8Y6S3 PMS2;PMS2CL Mismatch repair endonuclease PMS2;Protein PMS2CL 1 0 HT(0.001)T(0.001)ENKPHS(0.613)PKT(0.385)PEPR 59.512 0.011004 99558000 47881 55882 37779 46512 98168 60332 99104 108240 51620 88854 TRUE FALSE FALSE 58531.96326 62416.91379 51755.02422 49052.83279 88394.04923 63490.89023 77929.62079 81693.97029 61979.66051 66704.33304 0.877483675 0.935725026 0.775886991 0.735377007 1.325162028 0.951825576 1.168284237 1.224717594 0.929169931 1 16.02549286 -5.745207511 24.99997063 1.107115315 0.83464499 0.523040278 0.125590054 190.7201568 293741.7049 0.036073911 0.046428225 1.80E-06 5.745207511 -0.272470325 HTTFEQPVFSVSKQS(ph)PPISTSK ddPTM_HeLa_A485_30min_R1 1 HTTFEQPVFSVSKQSPPISTSK 22 1 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 HTTFEQPVFSVSKQS(1)PPISTSK 242.07 5.33E-47 1316100000 1352900 1617200 1193900 724880 2470600 1499300 2380200 2600400 1459500 1619000 TRUE FALSE FALSE 1653847.938 1806317.472 1635573.292 764478.3589 2224618.389 1577801.03 1871650.826 1962647.823 1752408.263 1215413.095 1.360729075 1.486175753 1.345693327 0.628986442 1.830339329 1.298160301 1.539929784 1.614798977 1.441821113 1 20.21301531 HTTFEQPVFSVSKQS(ph)PPISTSK ddPTM_HeLa_A486_30min_R1 1 HTTFEQPVFSVSKQSPPISTSK 22 1 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 HTTFEQPVFSVSKQS(1)PPISTSK 251.07 7.07E-48 1043700000 1259700 1035700 670070 78418 1306300 962500 1311800 1211700 1002300 553980 TRUE FALSE FALSE 1171401.535 953627.36 929539.0491 182561.067 1142451.673 843756.536 983573.7652 935822.3612 1089180.171 415259.8022 2.820888342 2.296459602 2.238451794 0.439630964 2.751173283 2.031876265 2.368574468 2.253582832 2.622888527 1 18.6636547 HTTQMS(ph)DEEEDDDGCDLFADS(ph)EKEEEDIEDIEENTRPK ddPTM_HeLa_A485_30min_R1 1 HTTQMSDEEEDDDGCDLFADSEKEEEDIEDIEENTRPK 38 2 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 2 0 HT(0.005)T(0.005)QMS(0.989)DEEEDDDGCDLFADS(1)EKEEEDIEDIEENTRPK 158.97 4.84E-11 185880000 38438 21993 19627 96211 55961 21042 64174 45293 38767 156730 TRUE FALSE FALSE 46988.40049 24564.89004 26887.84405 101466.7633 50389.32635 22143.72658 50462.70065 34184.82073 46547.18131 117660.0954 0.399357151 0.20877843 0.228521352 0.862371928 0.428261818 0.188200821 0.42888543 0.290538781 0.395607204 1 16.84426559 -10.23554425 2.657566693 1.00575965 0.380209572 0.507046578 0.183048835 1663069.313 1945823.81 78382.8417 0.049519417 5.81E-11 10.23554425 -0.625550078 HTTQMS(ph)DEEEDDDGCDLFADS(ph)EKEEEDIEDIEENTRPK ddPTM_HeLa_A486_30min_R1 1 HTTQMSDEEEDDDGCDLFADSEKEEEDIEDIEENTRPK 38 2 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 2 0 HT(0.001)T(0.004)QMS(0.995)DEEEDDDGCDLFADS(1)EKEEEDIEDIEENTRPK 196.58 5.91E-23 157600000 46007 45912 16231 13978 31046 61886 112050 76530 33965 65399 TRUE FALSE FALSE 42782.14688 42273.76591 22516.07788 32541.49041 27151.92119 54251.13453 84013.90486 59105.78964 36909.11355 49022.66472 0.872701374 0.862331049 0.459299347 0.663805009 0.553864653 1.106654133 1.713776787 1.205682922 0.752898965 1 15.58116129 -6.357327625 5.404197146 1.212532813 0.680242389 0.46021944 0.254331647 0.204002912 9.133958382 0.095141699 0.083596441 4.39E-07 6.357327625 -0.532290423 HTVLYIS(ph)PPPEDLLDNSR ddPTM_HeLa_A485_30min_R1 4 HTVLYISPPPEDLLDNSR 18 0 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 HTVLYIS(1)PPPEDLLDNSR;HTVLYIS(1)PPPEDLLDNSR;HTVLYIS(1)PPPEDLLDNSR;HTVLYIS(1)PPPEDLLDNSR ;;; 151.3 2.12E-08 268076000 166373 218425 209037 186036 239875 168420 224075 247087 188465 246632 TRUE FALSE FALSE 203382.0999 243967.9037 286368.4851 196198.6756 215992.2027 177238.2108 176199.5457 186488.5258 226288.1968 185151.1813 1.09846504 1.317668631 1.546673821 1.059667425 1.166572102 0.957262111 0.95165229 1.007222987 1.222180681 1 17.49834423 -5.383895515 9.825532818 1.048069089 1.320395273 0.477108088 0.12898151 0.325224637 24.59706343 0.037291371 0.05533018 4.13E-06 5.383895515 0.272326185 HTVLYIS(ph)PPPEDLLDNSR ddPTM_HeLa_A486_30min_R1 3 HTVLYISPPPEDLLDNSR 18 0 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 HTVLYIS(1)PPPEDLLDNSR;HTVLY(0.005)IS(0.995)PPPEDLLDNSR;HTVLYIS(1)PPPEDLLDNSR ;; 160.57 4.32E-12 186117000 219073 241643 184195 84001 245414 226285 243144 250855 213057 236302 TRUE FALSE FALSE 203717.114 222494.3286 255520.2369 195558.5732 214631.8877 198368.2574 182306.7995 193740.7926 231524.9523 177130.4411 1.150096577 1.256104412 1.442554059 1.10403707 1.211716554 1.119899302 1.029223426 1.093774686 1.307087313 1 17.43445265 -5.314363997 24.99892582 1.127159489 1.28023755 0.324059428 0.105286563 386.4166309 182522.9842 0.029767513 0.04415241 4.85E-06 5.314363997 0.153078062 HTVYNIITNFMR ddPTM_HeLa_A486_30min_R1 2 HTVYNIITNFMR 12 0 Q96T76-5;Q96T76-9;Q96T76;Q96T76-8;F8WCH8;B0QZ77;Q5T454;Q96T76-7 Q96T76-5 MMS19 MMS19 nucleotide excision repair protein homolog 0 0 ; ; 166.45 1.96E-06 44384000 41317 40339 37825 15689 48297 42343 53435 45706 40303 52134 FALSE FALSE TRUE 38420.89166 37142.39073 52471.85299 36524.78488 42239.13991 37119.15117 40064.99782 35299.74155 43796.49649 39079.30706 0.983151815 0.950436267 1.342701725 0.934632357 1.080856931 0.94984159 1.025222831 0.903284736 1.120708113 1 15.25411727 HVDSLSQRS(ph)PK ddPTM_HeLa_A485_30min_R1 7 HVDSLSQRSPK 11 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 HVDSLS(0.021)QRS(0.979)PK;HVDSLSQRS(1)PK;HVDSLSQRS(1)PK;HVDSLSQRS(1)PK;HVDSLSQRS(1)PK;HVDSLS(0.001)QRS(0.999)PK;HVDSLS(0.002)QRS(0.998)PK ;;;;;; 152.88 2.39E-07 14541170000 3029399 6295020 4125750 3436790 12497430 9246040 16345720 26407000 5333100 8060530 TRUE FALSE FALSE 3703278.356 7031167.83 5652036.612 3624533.135 11253141.99 9730148.357 12853323.39 19930641.85 6403404.252 6051188.214 0.61199193 1.161948295 0.934037484 0.598978747 1.859658234 1.60797318 2.124099092 3.293674092 1.058206095 1 22.52878703 -5.798379657 8.327846218 1.945468448 0.858709146 0.371739425 0.622694921 0.245203586 49.06307979 0.191082634 0.218839119 1.59E-06 5.798379657 -1.086759302 HVDSLSQRS(ph)PK ddPTM_HeLa_A486_30min_R1 6 HVDSLSQRSPK 11 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 HVDSLS(0.004)QRS(0.996)PK;HVDSLSQRS(1)PK;HVDSLSQRS(1)PK;HVDSLS(0.001)QRS(0.999)PK;HVDSLSQRS(1)PK;HVDSLSQRS(1)PK ;;;;; 148.41 3.66E-07 8752810000 4787170 3331490 3944440 1009986 11458830 5073720 11001370 11734600 3402120 5400970 TRUE FALSE FALSE 4451614.104 3067490.599 5471832.804 2351298.45 10021556.69 4447776.012 8248710.865 9062887.745 3697018.501 4048531.958 1.099562545 0.75767973 1.351559741 0.580778039 2.475355708 1.098614525 2.037457269 2.238561493 0.913175082 1 21.94896743 -5.73897459 24.99779132 1.683206717 0.962712908 0.278598612 0.531105039 289.0641259 321655.9326 0.148198089 0.191178827 1.82E-06 5.73897459 -0.720493809 HVEVSQAPLPPAPAYLS(ph)SPLALPSQR ddPTM_HeLa_A485_30min_R1 1 HVEVSQAPLPPAPAYLSSPLALPSQR 26 0 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 HVEVSQAPLPPAPAY(0.003)LS(0.588)S(0.407)PLALPS(0.001)QR 103.33 0.00062748 403210000 218050 248240 233310 212700 328980 252790 317820 293680 215180 303470 TRUE FALSE FALSE 266554.4702 277269.5086 319621.0778 224319.2624 296225.5961 266025.6935 249915.1606 221654.5195 258364.6523 227820.514 1.170019616 1.217052423 1.402951263 0.984631535 1.30025866 1.167698593 1.096982692 0.972934859 1.134071062 1 17.79753813 -6.793997059 2.738758833 1.039659525 1.21393463 0.352426815 0.106682314 0.303748591 4.650563285 0.047898373 0.031639321 1.61E-07 6.793997059 0.174275104 HVEVSQAPLPPAPAYLSS(ph)PLALPSQR ddPTM_HeLa_A485_30min_R1 1 HVEVSQAPLPPAPAYLSSPLALPSQR 26 0 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 HVEVSQAPLPPAPAY(0.002)LS(0.202)S(0.796)PLALPSQR 100.17 0.0011691 397810000 162400 189000 201930 204710 244620 179560 238150 231980 172730 269740 TRUE FALSE FALSE 198525.3197 211101.9059 276632.31 215892.7889 220264.7739 188961.4839 187267.307 175086.5413 207395.3266 202498.7822 0.980377845 1.042484817 1.366093697 1.066143641 1.08773382 0.933148742 0.924782386 0.864630095 1.024180612 1 17.62755371 -6.156210415 2.78933538 0.937886853 1.124408931 0.369918944 0.10317197 0.293841159 4.437937186 0.03845273 0.038156935 6.98E-07 6.156210415 0.186522078 HVFDMK(ac)PKHLLSGK ddPTM_HeLa_A485_30min_R1 1 HVFDMKPKHLLSGK 14 2 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 0 1 HVFDMK(0.5)PK(0.5)HLLSGK 78.486 0.017403 10579000 27733 38678 24853 18891 36234 35412 51784 65575 16500 26243 FALSE TRUE FALSE 33902.11017 43201.05565 34047.15892 19922.9675 32626.41573 37266.11756 40719.92536 49492.62843 19811.39865 19701.10307 1.720822944 2.192824204 1.728185412 1.011261523 1.656070507 1.891575179 2.066885556 2.512175499 1.005598447 1 14.26598879 -6.238897483 20.71123587 1.812985253 1.658875675 0 0.508476307 525.3331728 482664.8404 0.169514236 0.169230257 5.77E-07 6.238897483 -0.154109578 HVFGESDELIGQK ddPTM_HeLa_A485_30min_R1 1 HVFGESDELIGQK 13 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3;U3KPS5 P60174 TPI1 Triosephosphate isomerase 0 0 95.401 0.0041148 372260000 187210 215840 182150 221410 286980 252310 338780 368490 222310 336600 FALSE FALSE TRUE 228854.2186 241080.6104 249534.8649 233505.0677 258407.2636 265520.5615 266396.8854 278117.2497 266925.5779 252691.8147 0.905665342 0.954049939 0.987506719 0.924070564 1.022618259 1.050768351 1.054236307 1.100618356 1.056328549 1 17.94701941 -5.929483694 3.498488057 1.057699093 0.946836753 0.739595576 0.030595476 0.120054698 2.962562063 0.010029431 0.011360499 1.18E-06 5.929483694 -0.11086234 HVFSWTLQQVTRPWLSQHLER ddPTM_HeLa_A485_30min_R1 2 HVFSWTLQQVTRPWLSQHLER 21 1 E5RIH5;Q6NXR4 E5RIH5 TTI2 TELO2-interacting protein 2 0 0 ; ; 273.46 3.41E-64 37479000 12190.1 19480.7 17892.2 9985.6 18672.3 12131.1 17642.4 18542.1 10478.9 16851.5 FALSE FALSE TRUE 14901.74569 21758.79841 24511.26934 10531.08804 16813.22025 12766.26564 13872.95711 13994.6209 12581.91911 12650.73118 1.177935526 1.7199637 1.937537759 0.832448962 1.329031501 1.009132631 1.096613067 1.106230202 0.994560625 1 13.62693315 -5.266415201 24.99985633 1.068544097 1.622627468 0.594833904 0.211163021 276.0099981 1386749.308 0.058165762 0.08934541 5.41E-06 5.266415201 0.554083371 HVFSWTLQQVTRPWLSQHLER ddPTM_HeLa_A486_30min_R1 2 HVFSWTLQQVTRPWLSQHLER 21 1 E5RIH5;Q6NXR4 E5RIH5 TTI2 TELO2-interacting protein 2 0 0 ; ; 248.76 2.55E-45 45832000 14040.7 15081.9 12807.7 2754.5 16966.5 8536.6 15116.5 12378.9 13482.5 12697.1 FALSE FALSE TRUE 13056.51944 13886.75532 17767.18444 6412.615205 14838.40336 7483.441086 11334.19181 9560.494699 14651.17396 9517.663516 1.371819818 1.459050879 1.866759044 0.673759394 1.559038449 0.786268717 1.190858638 1.004500178 1.539366666 1 13.21639174 -5.250694609 24.99951679 1.116751745 1.555193979 0.340706648 0.291778674 828.3683155 1927334.523 0.074564631 0.127462706 5.61E-06 5.250694609 0.438442234 HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR ddPTM_HeLa_A485_30min_R1 3 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 1 0 HVGDLGNVTADKDGVADVS(1)IEDSVISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(0.999)IEDS(0.001)VISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(0.914)IEDS(0.065)VIS(0.02)LSGDHCIIGR ;; 214.38 1.18E-30 654470000 118859 134416 110355 80396 142911 135712 196657 160903 89343 187626 TRUE FALSE FALSE 145298.7745 150134.7819 151179.9068 84787.82991 128682.279 142817.6705 154639.6254 121441.287 107273.3206 140854.2912 1.031553766 1.065887171 1.073307071 0.601954184 0.913584371 1.01393908 1.097869466 0.862176693 0.761590717 1 17.10384399 HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR ddPTM_HeLa_A486_30min_R1 4 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 1 0 HVGDLGNVTADKDGVADVS(0.998)IEDS(0.002)VISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(1)IEDSVISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(1)IEDSVISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(0.999)IEDS(0.001)VISLSGDHCIIGR ;;; 376.41 9.33E-172 1636614000 313925 307742 223388 29512 370729 313465 379578 353898 272142 265117 TRUE FALSE FALSE 291920.4786 283355.4031 309889.8161 68705.42745 324228.7119 274792.8754 284603.5696 273323.1509 295731.4877 198729.9776 1.468930265 1.425831204 1.559351135 0.345722514 1.631503792 1.382744962 1.432111919 1.375349377 1.488107085 1 17.60044999 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR ddPTM_HeLa_A486_30min_R1 1 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 P00441;H7BYH4 P00441 SOD1 Superoxide dismutase [Cu-Zn] 0 0 67.441 0.00094968 29203000 15225 12093 9923.7 1580.3 18151 12643 14693 16228 13528 12125 FALSE FALSE TRUE 14157.80612 11134.70664 13766.42241 3679.018264 15874.33233 11083.2352 11016.65599 12533.23865 14700.61793 9088.821079 1.557716452 1.225099112 1.514654352 0.404784981 1.746577712 1.219435954 1.212110558 1.378972976 1.617439468 1 13.14987746 HVGNQQYNVTYVVK ddPTM_HeLa_A485_30min_R1 1 HVGNQQYNVTYVVK 14 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 0 0 123.02 7.46E-05 25025000 35348 43311 35921 37497 50451 39325 58031 61639 39039 55818 FALSE FALSE TRUE 43211.04065 48375.84469 49209.6727 39545.36616 45427.9213 41383.99619 45632.20278 46521.9386 46873.76921 41903.59985 1.031201157 1.15445558 1.174354301 0.943722408 1.084105458 0.987600023 1.088980492 1.110213413 1.118609603 1 15.35478657 -8.208931825 0.006270044 4.25E-05 2.116348584 0.046788007 0.070199364 18802.53691 63.95030789 10911.35021 10668.12851 6.18E-09 8.208931825 2.11630609 HVIARGHAFVLVY(ph)S(ph)VTK ddPTM_HeLa_A486_30min_R1 1 HVIARGHAFVLVYSVTK 17 1 O95661 O95661 DIRAS3 GTP-binding protein Di-Ras3 2 0 HVIARGHAFVLVY(0.999)S(0.997)VT(0.004)K 46.027 0.021029 593070000 501880 276230 99764 766230 239140 925360 979670 802650 277220 1881800 TRUE FALSE FALSE 466700.8037 254340.5288 138395.2926 1783822.163 209144.8313 811198.4916 734546.2041 619904.1167 301249.6528 1410585.032 0.3308562 0.180308541 0.098111982 1.2645974 0.148268149 0.575079469 0.520738692 0.439465968 0.213563625 1 20.42786221 -11.35000691 2.18186924 4.322263929 0.427633538 0.226696627 0.321566228 24275929.39 2555842.056 398358638.3 0.083015231 4.47E-12 11.35000691 -3.894630391 HVIGLQMGSNR ddPTM_HeLa_A485_30min_R1 2 HVIGLQMGSNR 11 0 Q01995;H0YCU9 Q01995 TAGLN Transgelin 0 0 ; ; 124.12 0.00072307 98554000 72731 100634 85036 66423 118472 89635 114413 124988 84715 100180 FALSE FALSE TRUE 88909.76003 112402.2709 116494.355 70051.5203 106676.5117 94328.15 89967.72788 94334.49703 101716.5234 75206.96968 1.18220107 1.494572529 1.548983499 0.931449846 1.418439171 1.254247451 1.196268488 1.254331845 1.352487993 1 16.19857875 -13.83794508 0.162352837 1.10E-12 1.36901485 0.209611018 0.168168992 201.126854 1.951000193 65.55956261 0.694156899 1.45E-14 13.83794508 1.36901485 HVIGLQMGSNR ddPTM_HeLa_A486_30min_R1 2 HVIGLQMGSNR 11 0 Q01995;H0YCU9 Q01995 TAGLN Transgelin 0 0 ; ; 141.71 0.00024267 75297000 42930 41332 42816 13207.2 55913 44468 52713 50665 43262 48397 FALSE FALSE TRUE 39920.82869 38056.70179 59395.50185 30747.02905 48899.87017 38981.99028 39523.64986 39129.68551 47011.98499 36278.07619 1.100411954 1.049027561 1.637228544 0.847537474 1.347917952 1.074533007 1.089463776 1.078604205 1.295878666 1 15.14681033 HVINFDLPSDIEEYVHR ddPTM_HeLa_A485_30min_R1 3 HVINFDLPSDIEEYVHR 17 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;O15523-2;O15523;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ;; ;; 237.01 5.89E-42 142308000 82446 92216 90210 82744 111626 100100 123052 127552 75171 103130 FALSE FALSE TRUE 100785.8283 102999.859 123582.433 87264.0952 100512.1235 105341.0812 96760.93496 96269.67201 90257.13019 77421.58897 1.301779382 1.330376454 1.596227029 1.127128704 1.298244131 1.360616368 1.249792677 1.243447381 1.165787623 1 16.2404483 -8.204039277 0.356227902 0.960734268 1.376813172 0.48935858 0.107261018 1.708170584 0.535878827 0.237386187 0.108529319 6.25E-09 8.204039277 0.416078904 HVINFDLPSDIEEYVHR ddPTM_HeLa_A486_30min_R1 2 HVINFDLPSDIEEYVHR 17 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;O15523-2;O15523;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ; ; 230.82 1.80E-34 103954000 74166 85986 69295 30373 98377 78069 92059 88534 75142 84703 FALSE FALSE TRUE 68967.34639 79172.1562 96127.87978 70709.87897 86037.63933 68437.64053 69024.8645 68376.74088 81655.36906 63492.81748 1.086222807 1.246946652 1.513996128 1.113667369 1.355076728 1.077880038 1.087128706 1.07692088 1.28605679 1 15.95430578 -6.274359439 24.69688724 1.109250544 1.267907735 0.265664256 0.130809646 949.6544362 1815273.512 0.045471236 0.040364054 5.32E-07 6.274359439 0.15865719 HVLHVQLNRPNK(ac)R ddPTM_HeLa_A485_30min_R1 1 HVLHVQLNRPNKR 13 2 M0QYT0;M0QZW4;M0R248;Q13011 M0QYT0 ECH1 "Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial" 0 1 HVLHVQLNRPNK(1)R 97.911 0.002454 12997000 3788.8 4187.2 4964.5 6896.7 7563.6 3817.3 4789.4 4448.7 4038.3 9503.8 FALSE TRUE FALSE 4631.605489 4676.856616 6801.07514 7273.449258 6810.541427 4017.167925 3766.105564 3357.64935 4848.749769 7134.677564 0.649168157 0.655510578 0.953242116 1.01945031 0.954568916 0.563048279 0.527859252 0.470609824 0.679603209 1 12.80063252 -6.2700276 24.83144998 0.607614414 0.851334625 0.221961317 0.177423171 768.420243 2221756.556 0.064159786 0.057485591 5.37E-07 6.2700276 0.243720211 HVLVTLGEK ddPTM_HeLa_A485_30min_R1 3 HVLVTLGEK 9 0 F8VPF3;H0YI43;G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2;F8VZU9;F8W180;F8VXL3 F8VPF3;G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 0 ;; ;; 138.98 0.00016624 540520000 1482450 1574620 1235380 1711070 1980880 1779680 2534780 2721550 1415190 2391760 FALSE FALSE TRUE 1812215.888 1758758.112 1692398.47 1804541.421 1783656.632 1872861.293 1993203.546 2054085.595 1699205.652 1795538.249 1.009288379 0.979515815 0.942557738 1.005014191 0.993382699 1.043063991 1.110086932 1.143994341 0.946348903 1 20.77598496 -6.285842354 3.099077513 1.06354302 0.982765742 0.237267787 0.054160944 0.318385818 6.240645083 0.019905518 0.018194545 5.18E-07 6.285842354 -0.080777278 HVLVTLGEK ddPTM_HeLa_A486_30min_R1 2 HVLVTLGEK 9 0 F8VPF3;H0YI43;G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2;F8VZU9;F8W180;F8VXL3 F8VPF3;G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 0 ; ; 140.83 0.00014877 334200000 1301810 1290000 809840 501750 1390770 1420730 1726780 1617090 1192920 1741960 FALSE FALSE TRUE 1210559.842 1187775.702 1123431.736 1168099.357 1216326.658 1245454.778 1294721.38 1248913.908 1296323.266 1305761.878 0.927090814 0.90964189 0.860364937 0.894573028 0.931507252 0.953814626 0.991544785 0.956463754 0.992771567 1 20.3164604 -6.209198843 1.739260322 0.981525235 0.896305563 0.793378848 0.019833314 0.169393712 1.013762184 0.008540012 0.008092067 6.18E-07 6.209198843 -0.085219672 HVPDS(ph)GATATAYLCGVK ddPTM_HeLa_A485_30min_R1 1 HVPDSGATATAYLCGVK 17 0 P10696;P05187 P10696 ALPPL2;ALPP "Alkaline phosphatase, placental-like;Alkaline phosphatase, placental type" 1 0 HVPDS(0.333)GAT(0.333)AT(0.333)AY(0.001)LCGVK 70.529 0.0056065 81145000 71557 75290 46154 106990 61966 71851 85473 88795 52227 128140 TRUE FALSE FALSE 87474.60778 84094.51056 63228.28523 112834.5928 55796.44746 75613.00726 67210.9953 67017.88702 62708.47985 96197.05624 0.909327283 0.874190062 0.657278795 1.172952658 0.5800224 0.786022049 0.698680375 0.696672951 0.651875247 1 16.55370513 -5.81441223 24.99999997 0.721060011 0.883775073 0.210316752 0.156035696 149.4449414 70528.02663 0.045694527 0.051812775 1.53E-06 5.81441223 0.162715062 HVPFDQFIQLVAHAGCMIGNSSCGVR ddPTM_HeLa_A485_30min_R1 3 HVPFDQFIQLVAHAGCMIGNSSCGVR 26 0 Q9Y223-5;Q9Y223-4;Q9Y223-3;Q9Y223;Q9Y223-2 Q9Y223-5 GNE Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase 0 0 ;; ;; 163.16 1.70E-21 28987600 11594.5 17990.6 15504.3 9210.5 18208.6 13825.8 18514.1 18738.7 11737 15762.3 FALSE FALSE TRUE 14173.65652 20094.44417 21239.98576 9713.646293 16395.68785 14549.69751 14558.41129 14143.00444 14092.50824 11833.04869 1.197802603 1.69816289 1.79497155 0.820891263 1.385584415 1.229581479 1.230317872 1.195212224 1.190944837 1 13.5305342 -5.249192784 24.99948062 1.174928835 1.57709739 0.461462951 0.203231873 692.4956801 1413617.904 0.053937761 0.092559023 5.63E-06 5.249192784 0.402168556 HVPFDQFIQLVAHAGCMIGNSSCGVR ddPTM_HeLa_A486_30min_R1 1 HVPFDQFIQLVAHAGCMIGNSSCGVR 26 0 Q9Y223-5;Q9Y223-4;Q9Y223-3;Q9Y223;Q9Y223-2 Q9Y223-5 GNE Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase 0 0 110.83 6.36E-08 8049900 4839.1 5067.5 5138.7 878.38 6142.5 3501.2 5934.8 5727.5 4942.2 5304.1 FALSE FALSE TRUE 4499.904079 4665.932844 7128.542259 2044.913031 5372.050373 3069.257542 4449.850268 4423.47328 5370.593875 3975.918836 1.131789723 1.173548313 1.792929522 0.514324642 1.351146891 0.77196182 1.11920048 1.112566293 1.350780561 1 11.95707259 -5.251864853 24.99948414 1.042284054 1.346835021 0.219321377 0.288149011 1131.289083 2953837.228 0.075570622 0.128730676 5.60E-06 5.251864853 0.304550967 HVS(ph)PVTPPR ddPTM_HeLa_A485_30min_R1 5 HVSPVTPPR 9 0 Q13443 Q13443 ADAM9 Disintegrin and metalloproteinase domain-containing protein 9 1 0 HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR ;;;; 132.17 0.00016271 2569230000 536234 725494 570909 553760 515686 664338 808430 790290 553106 991440 TRUE FALSE FALSE 655517.4033 810334.2123 782111.9966 584010.5066 464342.4912 699121.7104 635702.3262 596470.1384 664109.3008 744292.2541 0.880725817 1.088731218 1.050813027 0.784652135 0.623871186 0.939310743 0.854103106 0.801392377 0.892269531 1 19.5055097 -5.259774492 24.99608274 0.829394775 1.014954147 0.324483206 0.107481883 156.4725032 2349210.704 0.029667961 0.048143608 5.50E-06 5.259774492 0.185559372 HVS(ph)PVTPPR ddPTM_HeLa_A486_30min_R1 6 HVSPVTPPR 9 0 Q13443 Q13443 ADAM9 Disintegrin and metalloproteinase domain-containing protein 9 1 0 HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR;HVS(1)PVTPPR ;;;;; 132.17 0.00016271 1693790000 797262 761243 659868 242254 887858 772980 765983 736933 772493 967487 TRUE FALSE FALSE 741378.0509 700919.3323 915386.5615 563979.5548 776494.5707 677617.5867 574325.9517 569149.443 839453.3152 725221.9579 1.022277446 0.966489396 1.262215728 0.777664753 1.070699201 0.934358894 0.791931278 0.784793451 1.157512271 1 19.46806308 -5.272401982 24.99985308 0.922194274 1.071943722 0.201517194 0.137897433 1151.127763 2625106.341 0.038394124 0.05755194 5.34E-06 5.272401982 0.149749448 HVSPVT(ph)PPREVPIYANR ddPTM_HeLa_A485_30min_R1 1 HVSPVTPPREVPIYANR 17 1 Q13443 Q13443 ADAM9 Disintegrin and metalloproteinase domain-containing protein 9 1 0 HVSPVT(1)PPREVPIYANR 119.01 7.20E-05 208950000 25510 68690 65925 17064 67919 38810 56530 70908 58359 37958 TRUE FALSE FALSE 31184.61149 76722.69798 90313.40087 17996.16311 61156.74588 40842.03159 44451.90369 53517.70182 70071.116 28495.76917 1.094359352 2.692424182 3.169361751 0.631538072 2.146169332 1.433266509 1.559947494 1.878092903 2.459000689 1 14.79846011 -5.251772925 24.99445256 1.639230033 2.356085875 0.185835801 0.694645768 1187.410126 3070268.097 0.186122064 0.317215719 5.60E-06 5.251772925 0.716855841 HVT(ph)LPS(ph)SPR ddPTM_HeLa_A485_30min_R1 2 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 2 0 HVT(1)LPS(0.689)S(0.311)PR;HVT(1)LPS(0.706)S(0.294)PR ; 95.417 0.0043146 289960000 130463 148687 141050 104938 148868 137173 169471 176246 121438 114529 TRUE FALSE FALSE 159484.0443 166074.6512 193230.2646 110670.4972 134046.1792 144355.1662 133262.1364 133021.3922 145809.4927 85979.02805 1.854917971 1.931571629 2.247411595 1.287180138 1.559056694 1.678957874 1.549937693 1.547137659 1.695872773 1 16.39169718 -7.518135789 0.070293645 8.18E-12 3.028058951 0.524595351 0.224687929 16.96109323 1.200417558 25.21223404 24.53827422 3.03E-08 7.518135789 3.028058951 HVT(ph)LPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 2 0 HVT(1)LPS(0.699)S(0.301)PR 88.021 0.0006976 0 81430 112710 85358 26358 87010 97588 110530 98630 88480 98674 TRUE FALSE FALSE 75722.1775 103778.4491 118410.9036 61362.75606 76096.39446 85548.58476 82874.22493 76174.10208 96149.51764 73965.38814 1.023751506 1.403067728 1.600896129 0.829614467 1.028810858 1.156602932 1.120446022 1.029861453 1.299925817 1 16.1745627 -5.2626643 24.99902651 1.072146086 1.348621371 0.346584138 0.173548118 125.3231767 2557703.345 0.048647138 0.076913804 5.46E-06 5.2626643 0.276475285 HVTLGPGQS(ph)PLSR ddPTM_HeLa_A485_30min_R1 4 HVTLGPGQSPLSR 13 0 O15061 O15061 SYNM Synemin 1 0 HVTLGPGQS(1)PLSR;HVTLGPGQS(1)PLSR;HVTLGPGQS(0.983)PLS(0.017)R;HVTLGPGQS(1)PLSR ;;; 181.86 3.07E-17 2198760000 861280 1207210 1178210 604400 1520060 919730 1177220 1322390 934120 935160 TRUE FALSE FALSE 1052868.765 1348382.708 1614078.908 637416.8416 1368717.489 967885.6406 925697.33 998071.7791 1121589.316 702041.8223 1.499723707 1.920658663 2.299120732 0.907947107 1.949623862 1.378672338 1.31857861 1.421669974 1.597610399 1 19.42119745 -6.833256324 0.06642651 7.00E-07 2.990740197 0.248716157 0.354518344 45.47431008 1.998654547 39.72461628 47.56175147 1.47E-07 6.833256324 2.990739497 HVTLGPGQS(ph)PLSR ddPTM_HeLa_A486_30min_R1 3 HVTLGPGQSPLSR 13 0 O15061 O15061 SYNM Synemin 1 0 HVTLGPGQS(1)PLSR;HVTLGPGQS(0.999)PLS(0.001)R;HVTLGPGQS(0.971)PLS(0.029)R ;; 158.74 5.47E-09 1152480000 712210 625800 523260 65514 781880 513820 601130 615060 535770 485860 TRUE FALSE FALSE 662287.7569 576209.3289 725880.2854 152519.9029 683809.3197 450430.1125 450720.9159 475024.2647 582210.975 364197.4936 1.818485213 1.582134251 1.993095225 0.418783505 1.877578324 1.236774334 1.237572811 1.304304047 1.598613349 1 18.47436147 HVTLPS(ph)SPR ddPTM_HeLa_A485_30min_R1 7 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 HVTLPS(0.625)S(0.375)PR;HVTLPS(0.662)S(0.338)PR;HVTLPS(0.666)S(0.334)PR;HVTLPS(0.5)S(0.5)PR;HVTLPS(0.5)S(0.5)PR;HVTLPS(0.5)S(0.5)PR;HVTLPS(0.5)S(0.5)PR ;;;;;; 128.28 0.00019341 22705460000 3057350 4409680 3872070 2343420 4316640 3084300 4006900 4231200 3146060 3366600 TRUE FALSE FALSE 3737446.96 4925353.717 5304509.823 2471435.101 3886860.165 3245789.179 3150793.082 3193491.566 3777445.385 2527368.578 1.478789834 1.948807056 2.098827164 0.977868888 1.537907925 1.284256363 1.246669405 1.263563848 1.494615949 1 21.26920464 -5.257949037 24.99999423 1.281126861 1.852807925 0.590831468 0.222181997 209.0888531 1497617.003 0.059143359 0.09743909 5.52E-06 5.257949037 0.571681064 HVTLPS(ph)SPR ddPTM_HeLa_A486_30min_R1 5 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 HVTLPS(0.5)S(0.5)PR;HVTLPS(0.686)S(0.314)PR;HVTLPS(0.5)S(0.5)PR;HVTLPS(0.5)S(0.5)PR;HVTLPS(0.5)S(0.5)PR ;;;; 130.56 0.00017541 13742495000 2683434 2521828 2057544 248506.4 2448663 1929179 2167912 2154061 1997780 1917553 TRUE FALSE FALSE 2495339.134 2321989.165 2854280.14 578535.458 2141528.854 1691176.509 1625477.488 1663628.333 2170949.179 1437385.248 1.736026676 1.615425766 1.985744702 0.402491579 1.489878136 1.176564538 1.130857222 1.157399059 1.510346083 1 20.45501535 -5.217723613 24.99981904 1.148220387 1.762701827 0.499191496 0.299880948 395.32027 226071.988 0.077837119 0.134816886 6.06E-06 5.217723613 0.61448144 HVTLPSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 HVTLPS(0.002)S(0.998)PR;HVTLPS(0.017)S(0.983)PR ; 166.87 8.88E-06 6016400000 2676710 3949400 3499500 2186740 3944500 3041590 3630830 3798700 2934230 3095450 TRUE FALSE FALSE 3272134.905 4411247.975 4794110.676 2306196.069 3551771.73 3200842.949 2855073.509 2867062.869 3523103.047 2323811.283 1.408089775 1.898281503 2.063037869 0.992419688 1.528425202 1.377410882 1.228616769 1.23377612 1.516088278 1 21.14806148 -5.258923665 24.99999717 1.291601659 1.800650891 0.517871992 0.229821275 179.2611261 1781403.645 0.061826877 0.101006241 5.51E-06 5.258923665 0.509049232 HVTLPSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 HVTLPS(0.001)S(0.999)PR;HVTLPS(0.009)S(0.991)PR ; 187.42 2.17E-08 4425000000 4229000 4053200 3337000 425950 4092400 3232000 3631200 3502500 3464800 3079600 TRUE FALSE FALSE 3932568.939 3732009.67 4629175.768 991633.1263 3579093.032 2833268.701 2722635.353 2705057.209 3765131.654 2308448.115 1.703555264 1.616674703 2.005319391 0.429566998 1.550432521 1.227347794 1.179422373 1.171807671 1.631022863 1 21.13849188 -5.205584205 24.99960501 1.195738428 1.759332363 0.426666201 0.320378621 292.4040457 130873.2472 0.083142904 0.144007666 6.23E-06 5.205584205 0.563593935 HVVFGK ddPTM_HeLa_A485_30min_R1 2 HVVFGK 6 0 P62937;P62937-2;O43447;C9JQD4;H0YEL5;O43447-2;P23284;P45877 P62937;P23284;P45877 PPIA;PPIH;PPIB;PPIC "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase B;Peptidyl-prolyl cis-trans isomerase C" 0 0 ; ; 118.11 0.0051353 491670000 1328510 1600340 1353130 1509480 1896790 1656380 2230600 2341700 1438420 1973270 FALSE FALSE TRUE 1624032.466 1787485.842 1853709.095 1591939.07 1707938.928 1743105.496 1754014.088 1767394.403 1727097.7 1481370.104 1.096304334 1.206643658 1.251347715 1.074639663 1.152945454 1.176684672 1.184048525 1.193080918 1.165878598 1 20.4985007 -8.083974927 20.31262044 1 1.169136053 0.515467129 0.048491711 7736.055284 1871266.486 0.047161938 0.01217716 8.24E-09 8.083974927 0.169136053 HVVFGK ddPTM_HeLa_A486_30min_R1 3 HVVFGK 6 0 P62937;P62937-2;O43447;C9JQD4;H0YEL5;O43447-2;P23284;P45877 P62937;P23284;P45877 PPIA;PPIH;PPIB;PPIC "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase B;Peptidyl-prolyl cis-trans isomerase C" 0 0 ;; ;; 112.58 0.01716 1300990000 2311920 2243900 1524430 843600 2989650 2172960 2546760 2539640 1923390 2656680 FALSE FALSE TRUE 2149866.347 2066085.192 2114730.122 1963943.433 2614660.22 1904882.288 1909533.711 1961419.412 2090110.994 1991430.036 1.079559065 1.037488214 1.061915349 0.986197555 1.312956103 0.9565399 0.95887562 0.984930114 1.049552812 1 20.92537336 HVVFGK(ac)VK ddPTM_HeLa_A485_30min_R1 2 HVVFGKVK 8 1 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 1 ; HVVFGK(1)VK;HVVFGK(1)VK 85.064 0.019872 38442000 45723 58604 58692 43370 77036 59183 71365 67416 54623 64538 FALSE TRUE FALSE 55893.92361 65457.22801 80404.61318 45739.19328 69366.02535 62281.73037 56117.28475 50882.1203 65585.33507 48449.86433 1.153644584 1.351030161 1.659542587 0.94405204 1.431707319 1.28548823 1.158254735 1.050201502 1.353674277 1 15.56420501 -8.01933719 0.279794649 0.962077046 1.362189146 0.163411146 0.190857765 4.101814832 1.000606067 0.589330081 0.342866321 9.56E-09 8.01933719 0.4001121 HVVFGK(ac)VK ddPTM_HeLa_A486_30min_R1 1 HVVFGKVK 8 1 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 1 HVVFGK(1)VK 73.931 0.034239 17261000 18186 19008 25545 6514.3 28449 17070 18790 23986 21142 20767 FALSE TRUE FALSE 16911.25531 17501.73685 35436.70812 15165.61961 24880.66114 14964.07696 14088.54326 18524.91141 22974.60558 15566.80803 1.086366279 1.124298367 2.276427387 0.974227959 1.598314895 0.961281011 0.905037387 1.190026329 1.475871324 1 13.92618553 -6.265246184 24.9571992 1.105731994 1.419658797 0.144528655 0.371366816 682.3136405 4473195.625 0.129272082 0.118372895 5.43E-07 6.265246184 0.313926803 HVVFIAQR ddPTM_HeLa_A485_30min_R1 3 HVVFIAQR 8 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 0 ;; ;; 145.04 0.00016244 450840000 227902 313049 302066 244542 362815 282541 363660 426470 256204 342046 FALSE FALSE TRUE 278598.0136 349657.3574 413812.7834 257900.7102 326691.8647 297334.4099 285961.0702 321877.5638 307621.7928 256780.2271 1.08496677 1.361698918 1.611544581 1.004363588 1.272262543 1.157933433 1.113641317 1.253513822 1.19799642 1 17.97017459 -5.282068717 24.99789023 1.158186866 1.35363305 0.298956915 0.145986094 1033.579465 1252452.225 0.040848777 0.060664597 5.22E-06 5.282068717 0.195446184 HVVFIAQR ddPTM_HeLa_A486_30min_R1 3 HVVFIAQR 8 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 0 ;; ;; 134.66 0.00039298 297902000 221751 235111 192688 72490 319494 208108 251144 246887 217696 260878 FALSE FALSE TRUE 206207.4 216479.9481 267301.954 168760.3834 279420.0834 182433.7508 188305.1149 190676.2196 236566.0646 195552.4508 1.054486401 1.10701731 1.366906694 0.862992935 1.428875385 0.932914674 0.962939171 0.975064331 1.209732037 1 17.57719609 HVVLGAIENKVES(ph)K ddPTM_HeLa_A485_30min_R1 2 HVVLGAIENKVESK 14 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 HVVLGAIENKVES(1)K;HVVLGAIENKVES(1)K ; 190.55 5.95E-18 473680000 632130 407810 270490 1558220 614500 559610 1065120 707240 450620 2016710 TRUE FALSE FALSE 772745.1377 455499.832 370555.507 1643341.613 553318.2224 588910.3143 837548.4108 533788.2811 541055.3007 1513981.312 0.510405995 0.300862255 0.244755668 1.08544379 0.365472294 0.388981231 0.553209214 0.352572569 0.357372509 1 20.52991597 -10.20725502 3.853094692 1.000402345 0.463780106 0.337927097 0.22585398 153638381.7 260984267.7 869064.4243 0.056839737 6.21E-11 10.20725502 -0.536622238 HVVLGAIENKVES(ph)K ddPTM_HeLa_A486_30min_R1 2 HVVLGAIENKVESK 14 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 1 0 HVVLGAIENKVES(1)K;HVVLGAIENKVES(1)K ; 193.8 2.93E-18 299480000 806334 690787 223828 722855 476729 992790 1399430 1253020 548402 2212850 TRUE FALSE FALSE 749814.1505 636046.5223 310500.1959 1682842.971 416933.2035 870309.6637 1049277.812 967734.6992 595937.9269 1658737.957 0.452038942 0.383452082 0.187190626 1.014532141 0.251355678 0.524681828 0.632575994 0.583416263 0.359271894 1 20.66165456 -14 0.252758173 4.086956347 0.44948835 0.322314902 0.220915822 224.1340897 2.219919873 358.4686721 0.306821827 1.00E-14 14 -3.637467997 HVVLGAIENKVES(ph)KGNS(ph)PPSSGEACR ddPTM_HeLa_A485_30min_R1 1 HVVLGAIENKVESKGNSPPSSGEACR 26 2 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 2 0 HVVLGAIENKVES(0.997)KGNS(0.762)PPS(0.116)S(0.125)GEACR 50.464 0.025907 262850000 78737 53962 44299 228990 152480 82909 213470 172900 73705 323170 TRUE FALSE FALSE 96251.77401 60272.38649 60687.04354 241499.1439 137298.5558 87249.98704 167860.3906 130496.0039 88496.91744 242609.6665 0.396735115 0.248433574 0.250142727 0.995422595 0.565923682 0.359631124 0.691894899 0.537884602 0.364770781 1 17.88827751 -14 0.175458175 2.895404601 0.392458566 0.328703842 0.216081435 174.26623 1.662374938 116.321456 0.766849845 1.00E-14 14 -2.502946034 HVVRPPPRS(ph)PEPDTLPLAAGSDHPLPR ddPTM_HeLa_A485_30min_R1 4 HVVRPPPRSPEPDTLPLAAGSDHPLPR 27 2 H3BVB1;H3BME1;H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2 H3BVB1 FBXL19 F-box/LRR-repeat protein 19 1 0 HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR ;;; 222.95 1.11E-38 3114270000 351787 620900 594610 267228 704400 468186 668620 694560 488806 478957 TRUE FALSE FALSE 430040.8045 693508.8539 814580.9828 281825.989 634267.4627 492699.495 525763.8749 524218.071 586904.8806 359561.8345 1.19601349 1.928761029 2.265482331 0.783803958 1.764001076 1.370277509 1.462234933 1.457935801 1.632278024 1 18.45588037 -12.12683413 0.176398017 3.44E-09 1.688155391 0.146093535 0.384398191 122.3196311 2.135603196 47.86181047 1.373676822 7.47E-13 12.12683413 1.688155388 HVVRPPPRS(ph)PEPDTLPLAAGSDHPLPR ddPTM_HeLa_A486_30min_R1 4 HVVRPPPRSPEPDTLPLAAGSDHPLPR 27 2 H3BVB1;H3BME1;H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2 H3BVB1 FBXL19 F-box/LRR-repeat protein 19 1 0 HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR;HVVRPPPRS(1)PEPDTLPLAAGSDHPLPR ;;; 181.93 1.51E-20 1970990000 541808 567770 589511 64140.9 737490 471080 528578 576642 529280 403913 TRUE FALSE FALSE 503830.0571 522777.8374 817785.4469 149323.2567 644987.1274 412962.9392 396322.1937 445353.2046 575158.4166 302770.5558 1.664065569 1.726646886 2.701007186 0.493189492 2.130283527 1.363946828 1.308985257 1.470926403 1.899651091 1 18.20786539 -5.246335736 24.99914953 1.428128681 2.000180432 0.259840408 0.497177936 1241.590201 2055044.251 0.129341686 0.222900499 5.67E-06 5.246335736 0.572051751 HWDQNER ddPTM_HeLa_A485_30min_R1 3 HWDQNER 7 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ;; ;; 157.58 0.0015201 952350000 93478 111111 75209 107249 83344 108580 122864 131979 82224 173393 FALSE FALSE TRUE 114271.8586 124104.4649 103031.9388 113107.7413 75045.97872 114265.0809 96613.10269 99610.94331 98725.6026 130169.3162 0.87787093 0.953407981 0.791522471 0.868927829 0.576525874 0.877818861 0.742211034 0.765241351 0.758439896 1 16.99002989 -4.77502446 22.66381194 0.784742302 0.915639394 0.158691875 0.105461044 99.5485041 166078.4414 0.025914121 0.054565869 1.68E-05 4.77502446 0.130897093 HWDQNER ddPTM_HeLa_A486_30min_R1 2 HWDQNER 7 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ; ; 145.34 0.0043216 381310000 43722 52334 60240 22190 92837 64290 64413 57550 71254 79422 FALSE FALSE TRUE 40657.31358 48186.86324 83566.54128 51659.44142 81192.51779 56358.55345 48296.18611 44447.12131 77430.35409 59534.21425 0.682923494 0.80939782 1.403672532 0.867726938 1.363795908 0.946658223 0.811234123 0.746581136 1.300602604 1 15.8614314 -4.538520568 24.94322647 1.042329401 0.714541826 0.246549939 0.219981176 273.4763105 436098.3509 0.055891643 0.147976174 2.89E-05 4.538520568 -0.327787574 HWILPQDYDHAQAEAR ddPTM_HeLa_A485_30min_R1 1 HWILPQDYDHAQAEAR 16 0 Q15293-2;Q15293 Q15293-2 RCN1 Reticulocalbin-1 0 0 116.35 0.00022338 117610000 35601 39434 37512 41773 57115 38654 53302 51776 34953 55442 FALSE FALSE TRUE 43520.31963 44045.46327 51389.2498 44054.95322 51428.43006 40677.86367 41913.59226 39077.85482 41967.74649 41621.32973 1.045625402 1.058242578 1.23468544 1.058470585 1.23562679 0.97733215 1.007021941 0.938890109 1.008323058 1 15.34503544 -6.294491472 24.86993911 0.983788331 1.124963949 0.533648095 0.06550946 477.6794904 359426.8739 0.022577321 0.019912415 5.08E-07 6.294491472 0.141175618 HWILPQDYDHAQAEAR ddPTM_HeLa_A486_30min_R1 1 HWILPQDYDHAQAEAR 16 0 Q15293-2;Q15293 Q15293-2 RCN1 Reticulocalbin-1 0 0 94.544 0.001585 135650000 53640 50026 38598 21255 57844 52398 67388 63896 42357 63298 FALSE FALSE TRUE 49880.113 46061.75757 53544.17929 49482.71417 50588.66615 45933.6675 50526.80964 49348.27564 46028.53886 47447.7688 1.051263616 0.970788695 1.128486769 1.042888115 1.066196945 0.968089094 1.064893269 1.040054715 0.970088584 1 15.53405263 -6.216075975 24.99978184 1.014645211 1.051168669 0.181764493 0.045023567 924.9448779 509737.8388 0.014824603 0.014824537 6.08E-07 6.216075975 0.036523458 HWMLDKLTGVFAPR ddPTM_HeLa_A485_30min_R1 2 HWMLDKLTGVFAPR 14 1 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 ; ; 226.19 1.80E-22 36791000 37899 56038 50662 35203 86884 58745 95089 104995 45189 66632 FALSE FALSE TRUE 46329.5018 62591.15663 69403.98202 37126.05075 78233.52389 61820.79736 74772.45834 79244.81162 54258.0178 50021.86867 0.926184947 1.251275858 1.387472797 0.742196398 1.563986432 1.235875408 1.494795383 1.584203344 1.084685943 1 15.61027133 -5.789304122 24.99973758 1.360275576 1.111437763 0.189012055 0.244411392 349.8339275 313862.7047 0.073332223 0.083167555 1.62E-06 5.789304122 -0.248837813 HWMLDKLTGVFAPR ddPTM_HeLa_A486_30min_R1 2 HWMLDKLTGVFAPR 14 1 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 ; ; 218.16 5.32E-22 41263000 78639 53740 51801 36071 90543 50487 88538 83000 50233 85468 FALSE FALSE TRUE 73126.81219 49481.44668 71859.73448 83975.11093 79186.25266 44258.42725 66384.85594 64102.71188 54587.23689 64066.2565 1.141424772 0.772348025 1.121647157 1.31075414 1.236005613 0.690822746 1.03619065 1.000569026 0.852043492 1 15.96727707 -6.239030514 24.9881334 0.923477288 1.108404901 0.281367428 0.159737658 1273.847432 1420468.486 0.056370162 0.056331906 5.77E-07 6.239030514 0.184927614 HWMLDKLTGVFAPRPSTGPHK ddPTM_HeLa_A485_30min_R1 5 HWMLDKLTGVFAPRPSTGPHK 21 2 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 ;;;; ;;;; 196.62 1.30E-28 353953000 92147.2 218043.9 121396.7 50546.3 216949 167003.9 294680.3 470422 101928.7 117721.2 FALSE FALSE TRUE 112645.0267 243542.2374 166306.3911 53307.51638 195348.7958 175747.966 231719.4466 355050.2669 122384.8551 88375.47134 1.274618681 2.755767338 1.881816171 0.603193574 2.210441346 1.988650961 2.62198824 4.01752049 1.384828316 1 16.43135838 -6.411712663 2.396966904 2.483798471 1.734770168 0.039682524 0.926342 0.690829879 7.791149342 0.373346321 0.312880174 3.88E-07 6.411712663 -0.749028302 HWMLDKLTGVFAPRPSTGPHK ddPTM_HeLa_A486_30min_R1 2 HWMLDKLTGVFAPRPSTGPHK 21 2 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 ; ; 198.07 1.18E-28 146492000 319590 103846 109670 32601 257664 106754 219211 179142 90670 194568 FALSE FALSE TRUE 297188.3914 95616.86476 152137.1611 75896.77556 225345.3785 93583.77688 164362.0892 138355.2772 98529.3486 145846.9064 2.037673604 0.655597483 1.043129161 0.520386599 1.545081648 0.641657607 1.126949438 0.94863361 0.675566942 1 17.15409526 -4.253146112 24.70866172 0.915526421 2.037674264 0.583460986 0.286677021 606.825219 1807906.023 0.066048149 0.72456083 5.58E-05 4.253146112 1.122147844 HWPFMVVNDAGRPK ddPTM_HeLa_A485_30min_R1 3 HWPFMVVNDAGRPK 14 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 165.73 2.86E-11 983230000 834252 727152 629341 1112500 1057928 740391 1164500 931135 756624 1432970 FALSE FALSE TRUE 1019828.479 812186.101 862160.425 1173273.058 952596.9737 779156.7279 915695.0619 702772.6813 908471.4966 1075756.951 0.948010123 0.754990335 0.801445368 1.090648828 0.885513194 0.724286957 0.851209989 0.653282027 0.844495121 1 20.03692073 -6.134898955 8.522557546 0.795462619 0.894587229 0.094370875 0.11920536 0.647993731 41.84716486 0.039365643 0.039396732 7.33E-07 6.134898955 0.09912461 HWPFMVVNDAGRPK ddPTM_HeLa_A486_30min_R1 2 HWPFMVVNDAGRPK 14 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 178.58 9.83E-17 1260170000 1040380 1081590 600700 486650 1328530 1132410 1321310 1309980 933560 1394160 FALSE FALSE TRUE 967454.7345 995880.8693 833307.1273 1132945.794 1161893.379 992704.7677 990704.2626 1011726.151 1014481.732 1045053.262 0.925746821 0.952947477 0.797382447 1.0841034 1.111803027 0.949908301 0.947994039 0.968109653 0.970746439 1 19.99514504 -5.268064503 24.99990114 1.00315873 0.898117771 0.396030563 0.063592943 610.1467393 2302387.919 0.019366368 0.029483452 5.39E-06 5.268064503 -0.105040959 HWPFQVINDGDKPK ddPTM_HeLa_A485_30min_R1 1 HWPFQVINDGDKPK 14 1 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 193.96 2.51E-15 12990000 45113 46187 64335 64782 79384 47795 74017 56767 56001 95216 FALSE FALSE TRUE 55148.23121 51588.16788 88135.1937 68320.87662 71480.25023 50297.47229 58202.66329 42844.80424 67239.88703 71480.40352 0.771515387 0.721710641 1.232997988 0.955798698 0.999997855 0.703654006 0.814246429 0.599392311 0.940675818 1 16.12526016 -6.255738652 24.8413911 0.786721527 0.942031614 0.113866363 0.166663696 826.053108 3599599.05 0.056659 0.055181991 5.55E-07 6.255738652 0.155310087 HWPFQVINDGDKPK ddPTM_HeLa_A486_30min_R1 1 HWPFQVINDGDKPK 14 1 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 121.76 8.60E-05 11182000 15035 27550 60028 3944 53193 17251 17056 23259 29193 18681 FALSE FALSE TRUE 13981.12414 25366.83766 83272.44921 9181.831319 46521.03793 15122.74702 12788.4084 17963.43344 31723.47275 14003.15601 0.99842665 1.811508609 5.946691529 0.655697281 3.322182365 1.079952763 0.913251869 1.282813205 2.26545164 1 13.7734644 -6.276355164 24.4275728 1.301279513 2.589856499 0.161224331 1.410828798 1143.302055 1872379.07 0.495805268 0.439155077 5.29E-07 6.276355164 1.288576986 HWVAPGGPYSAETPGVPS(ph)PIAALK ddPTM_HeLa_A485_30min_R1 2 HWVAPGGPYSAETPGVPSPIAALK 24 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 HWVAPGGPYSAETPGVPS(1)PIAALK;HWVAPGGPYSAETPGVPS(1)PIAALK ; 201.35 1.18E-28 5051200000 2263200 2563000 1994690 2571500 3354100 2657000 3706600 3843900 2330700 3588100 TRUE FALSE FALSE 2766641.032 2862720.555 2732608.837 2711974.534 3020154.027 2796116.411 2914654.63 2901177.498 2798450.112 2693652.704 1.027096414 1.062765274 1.014462196 1.006801853 1.121211366 1.038038945 1.082045442 1.077042149 1.038905315 1 21.36113242 -4.243240867 22.1394695 1.05198186 1.027096311 0.026636213 0.035996273 3103.862976 3775720.077 0.008894918 0.234770371 5.71E-05 4.243240867 -0.024885549 HWVAPGGPYSAETPGVPS(ph)PIAALK ddPTM_HeLa_A486_30min_R1 2 HWVAPGGPYSAETPGVPSPIAALK 24 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 HWVAPGGPYSAETPGVPS(1)PIAALK;HWVAPGGPYSAETPGVPS(1)PIAALK ; 198.67 1.40E-28 5105900000 1443300 1380100 774160 413160 1383000 1308100 1545600 1586300 1084300 1631900 TRUE FALSE FALSE 1342132.123 1270735.85 1073935.485 961857.36 1209531.244 1146719.922 1158874.532 1225134.119 1178287.997 1223261.618 1.097175047 1.038809549 0.877927885 0.786305518 0.988775603 0.937428188 0.947364419 1.001530744 0.963234667 1 20.22230155 -9.320399344 13.62398502 1 0.955699905 0.019475646 0.080820759 0 0 0.08415563 0.020410738 4.78E-10 9.320399344 -0.044300095 HY(ph)MAYAASR ddPTM_HeLa_A486_30min_R1 1 HYMAYAASR 9 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 HY(0.5)MAY(0.5)AASR 70.912 0.001852 0 177500 328670 233810 45393 285030 227190 345210 225360 166070 113120 TRUE FALSE FALSE 165058.1666 302624.9922 324347.4936 105677.198 249278.8796 199161.6077 258834.8067 174050.4476 180465.0813 84794.01571 1.946578013 3.568942804 3.825122456 1.246281322 2.93981689 2.348769616 3.052512663 2.052626546 2.12827615 1 16.37167483 -9.197107583 0.279799795 0.38396042 2.951938482 0.332535741 0.72187327 8.533554852 0.918704922 6.134843539 1.046976005 6.35E-10 9.197107583 2.567978062 HYAHTDCPGHADYVK ddPTM_HeLa_A485_30min_R1 1 HYAHTDCPGHADYVK 15 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 58.752 0.01671 153950000 109280 117980 83288 123980 114550 117600 142600 195200 110160 202310 FALSE FALSE TRUE 133588.959 131776.7347 114099.6971 130752.7135 103144.9998 123757.3542 112132.3451 147326.8939 132268.1016 151877.8402 0.879581635 0.867649517 0.751259676 0.860907116 0.679131331 0.814847999 0.73830616 0.970035482 0.870884794 1 17.21255186 -7.268886019 24.99357563 0.940345112 0.798032536 0.505903103 0.067000116 509.1104901 1708744.782 0.035375385 0.017521148 5.38E-08 7.268886019 -0.142312577 HYAHTDCPGHADYVK ddPTM_HeLa_A486_30min_R1 2 HYAHTDCPGHADYVK 15 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 ; ; 62.042 0.012598 349220000 232720 199892 161339 91446 245890 220350 230490 244510 198507 286850 FALSE FALSE TRUE 216407.5298 184051.8299 223813.7816 212890.9094 215048.1834 193165.4574 172818.9641 188840.4106 215713.7466 215020.8929 1.006448847 0.855971843 1.040893183 0.990094063 1.00012692 0.898356689 0.803731032 0.878242147 1.003222262 1 17.71411732 -6.27182324 23.77281377 0.902039339 0.975975758 0.144233457 0.070996545 624.6543667 1430079.201 0.02518678 0.022479717 5.35E-07 6.27182324 0.073936419 HYEDGYPGGSDNYGS(ph)LSR ddPTM_HeLa_A485_30min_R1 6 HYEDGYPGGSDNYGSLSR 18 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 HYEDGYPGGSDNYGS(0.996)LS(0.004)R;HYEDGYPGGSDNYGS(0.901)LS(0.099)R;HYEDGYPGGSDNYGS(0.999)LS(0.001)R;HYEDGYPGGSDNYGS(0.997)LS(0.003)R;HYEDGYPGGSDNYGS(0.996)LS(0.004)R;HYEDGYPGGSDNYGS(0.991)LS(0.009)R ;;;;; 283.49 2.08E-71 15010400000 8466380 8768080 7761240 6669480 10230880 7802110 11219820 10994920 7049640 9408620 TRUE FALSE FALSE 10349697.02 9793430.684 10632445.65 7033816.804 9212257.664 8210616.415 8822613.799 8298398.631 8464438.085 7063224.187 1.465293575 1.386538276 1.505324674 0.99583655 1.304256728 1.162445959 1.249091572 1.174874025 1.198381626 1 22.75189546 -1 0.220540664 1.076366991 3.290637397 0.51726511 0.115399487 42.69045291 0.546142581 0.178260339 33.68216798 0.1 1 2.214270406 HYEDGYPGGSDNYGS(ph)LSR ddPTM_HeLa_A486_30min_R1 7 HYEDGYPGGSDNYGSLSR 18 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 HYEDGYPGGSDNYGS(0.992)LS(0.008)R;HYEDGYPGGSDNYGS(0.953)LS(0.047)R;HYEDGYPGGSDNYGS(0.5)LS(0.5)R;HYEDGYPGGSDNYGS(0.982)LS(0.018)R;HYEDGYPGGSDNYGS(0.993)LS(0.007)R;HYEDGYPGGSDNYGS(1)LSR;HYEDGYPGGSDNYGS(0.856)LS(0.144)R ;;;;;; 263.19 5.58E-58 11967210000 4811740 5818250 5499690 1664678 7123650 5611090 6790280 6554050 5093990 5391460 TRUE FALSE FALSE 4474461.874 5357190.68 7629317.255 3875454.512 6230135.392 4918850.765 5091280.124 5061835.889 5535541.155 4041403.323 1.107155489 1.325576848 1.887789128 0.958937825 1.541577243 1.217114544 1.259780259 1.252494612 1.369707676 1 21.94642491 -12.93707896 0.221022606 8.56E-13 1.376029465 0.14149327 0.238574846 176.5231915 2.701838096 79.21390606 0.453012701 1.16E-13 12.93707896 1.376029465 HYFQNTQGLIFVVDSNDRER ddPTM_HeLa_A485_30min_R1 2 HYFQNTQGLIFVVDSNDRER 20 1 P84077;P61204;C9J1Z8;F5H423;P84085;F5H0C7;C9JPM4;P18085;C9JAK5 P84077;P18085 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 0 ; ; 228.49 1.65E-30 53625000 11034.1 12197.5 17275 16092.9 19665.7 14498.4 18605.5 20974.3 14915.5 21365.3 FALSE FALSE TRUE 13488.59748 13623.89152 23665.74137 16972.01438 17707.71386 15257.51381 14630.28293 15830.32004 17908.90404 16039.32391 0.840970452 0.849405598 1.475482477 1.058150236 1.10401872 0.951256667 0.91215085 0.986969284 1.116562278 1 13.96932571 -6.258069217 23.85280355 0.987496088 1.075951152 0.040638143 0.170608813 556.6797003 3939979.32 0.060884667 0.058459675 5.52E-07 6.258069217 0.088455064 HYFQNTQGLIFVVDSNDRER ddPTM_HeLa_A486_30min_R1 1 HYFQNTQGLIFVVDSNDRER 20 1 P84077;P61204;C9J1Z8;F5H423;P84085;F5H0C7;C9JPM4;P18085;C9JAK5 P84077;P18085 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 0 194.49 3.57E-23 22247000 5897.8 6827.6 9726.7 3774.6 12353 6702.1 6579.2 7737.3 6509.3 6439.3 FALSE FALSE TRUE 5484.394676 6286.55611 13493.13873 8787.459558 10803.57155 5875.263044 4933.014572 5975.685694 7073.531365 4826.857367 1.136224723 1.302411825 2.795429345 1.820534333 2.238220592 1.217202539 1.021993027 1.238007515 1.465452742 1 12.23686848 -6.288536727 20.38346195 1.192996432 1.87760171 0.35912087 0.447160791 90.36487572 67973.80793 0.166074938 0.146578489 5.15E-07 6.288536727 0.684605278 HYGGLTGLNK ddPTM_HeLa_A485_30min_R1 1 HYGGLTGLNK 10 0 P18669;P15259;Q8N0Y7 P18669 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 0 0 108.81 0.0024931 15136000 70463 80477 63062 75101 109480 86330 123660 131440 77817 119270 FALSE FALSE TRUE 86137.25126 89888.08509 86391.25803 79203.57746 98579.78679 90850.10531 97239.03079 99204.13391 93434.15812 89538.184 0.962016956 1.003907842 0.964853811 0.884578779 1.100980413 1.014652088 1.086006287 1.107953383 1.043511873 1 16.45021544 -5.773843911 24.99999062 1.063396199 0.958202406 0.589794854 0.04274088 158.0489896 318529.5879 0.013230415 0.015104847 1.68E-06 5.773843911 -0.105193793 HYGITS(ph)PISLAAPK ddPTM_HeLa_A485_30min_R1 2 HYGITSPISLAAPK 14 0 G3XAH6;P51003;G3V457;G3V3I9;A0A0C4DGK1;P51003-2 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 HY(0.001)GIT(0.232)S(0.767)PISLAAPK;HYGIT(0.054)S(0.946)PISLAAPK ; 124.5 2.22E-05 832320000 706220 648580 529680 980890 1074800 681580 1092500 924330 787310 1289900 TRUE FALSE FALSE 863316.2026 724425.7891 725630.6738 1034473.537 967789.1381 717266.4749 859078.4501 697636.6182 945315.8954 968351.6689 0.891531693 0.748101968 0.749346232 1.068282908 0.999419084 0.740708668 0.887155439 0.720437255 0.976211356 1 19.88517155 HYGITS(ph)PISLAAPK ddPTM_HeLa_A486_30min_R1 2 HYGITSPISLAAPK 14 0 G3XAH6;P51003;G3V457;G3V3I9;A0A0C4DGK1;P51003-2 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 HYGIT(0.014)S(0.986)PIS(0.001)LAAPK;HYGIT(0.103)S(0.882)PIS(0.015)LAAPK ; 252.14 7.07E-37 337430000 668830 596300 369480 263830 662280 673150 830360 756330 543670 776810 TRUE FALSE FALSE 621948.4708 549047.0163 512552.551 614209.5732 579210.6669 590103.5971 622595.1453 584130.1696 590795.7533 582291.7198 1.068104611 0.942907133 0.880233281 1.054814198 0.994708747 1.013415745 1.069215179 1.003157266 1.014604421 1 19.15138258 -5.300199409 24.99990489 1.022093481 0.961664061 0.229959141 0.048302702 749.4073656 483359.9925 0.013684214 0.020297294 5.01E-06 5.300199409 -0.060429421 HYLDFINHYANLFHEK ddPTM_HeLa_A485_30min_R1 2 HYLDFINHYANLFHEK 16 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 268.21 3.37E-54 1429480000 773750 845780 647260 728140 795370 737940 1064450 1128070 623620 1016500 FALSE FALSE TRUE 945868.0181 944686.6137 886708.4087 767916.4445 716180.1701 776577.3973 837021.5617 851409.0638 748774.8138 763105.2573 1.239498757 1.237950603 1.161973922 1.006304749 0.938507713 1.017654367 1.096862528 1.115716417 0.981220882 1 19.54152254 -5.077773513 3.199755809 1.026808547 1.235651082 0.766027882 0.049366871 0.132449636 2.619291055 0.015584658 0.031312302 8.36E-06 5.077773513 0.208842535 HYLDFINHYANLFHEK ddPTM_HeLa_A486_30min_R1 2 HYLDFINHYANLFHEK 16 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 224.86 4.92E-25 1219130000 1154130 985700 680710 442710 1108470 960020 1154730 1031000 723600 1180600 FALSE FALSE TRUE 1073231.447 907589.5421 944299.142 1030651.253 969435.3565 841582.4932 865804.3405 796263.8066 786322.2306 884970.0756 1.212731906 1.025559584 1.06704076 1.164617066 1.095444223 0.950972825 0.97834307 0.899763538 0.888529739 1 19.75526915 -6.26495193 3.944787976 0.937161711 1.110224172 0.692979926 0.056492477 0.132328265 4.826478832 0.0202477 0.018853293 5.43E-07 6.26495193 0.173062462 HYLDFINHYANLFHEKR ddPTM_HeLa_A485_30min_R1 2 HYLDFINHYANLFHEKR 17 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 294.39 1.68E-68 132608000 56396 123372 56024 21141 48674 64798 60389 186215 34662 34641 FALSE FALSE TRUE 68941.09564 137799.2822 76749.60895 22295.8793 43827.84566 68190.72308 47486.39682 140545.4793 41618.34546 26005.63622 2.651005922 5.298823726 2.951268267 0.857347965 1.685321031 2.622151695 1.826004041 5.404423798 1.600358673 1 14.66653671 -9.564265347 16.15232385 0.99999931 2.803983996 0.119930213 1.432153195 0 0 1.431540691 0.347199616 2.73E-10 9.564265347 1.803984686 HYLDFINHYANLFHEKR ddPTM_HeLa_A486_30min_R1 2 HYLDFINHYANLFHEKR 17 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 261.15 1.18E-43 44505000 126495 15215.8 21222.9 36434 81083 21691.6 19864.3 28051 9506.8 42728 FALSE FALSE TRUE 117628.3537 14010.04459 29440.97525 84820.19327 70912.81407 19015.51094 14894.04204 21664.39965 10330.85708 32028.63069 3.672600145 0.437422528 0.919208053 2.648261616 2.214044514 0.593703525 0.465022754 0.676407301 0.322550695 1 14.9670745 -6.271992084 23.2358319 0.582154923 1.871083474 0.390484749 0.848131302 321.8232134 708613.9521 0.300898818 0.268576238 5.35E-07 6.271992084 1.288928551 HYLT(ph)HSQER ddPTM_HeLa_A486_30min_R1 1 HYLTHSQER 9 0 A0A075B6F0;Q9H0D2-2;Q9H0D2 A0A075B6F0 ZNF541 Zinc finger protein 541 1 0 HY(0.072)LT(0.925)HS(0.003)QER 64.439 0.028806 80287000 127070 176610 74624 113850 104660 138160 183330 166420 88605 301100 TRUE FALSE FALSE 118163.0492 162614.7804 103520.4113 265048.5537 91532.56688 121115.2239 137458.8949 128529.7989 96285.35274 225702.6002 0.523534284 0.72048253 0.458658479 1.174326541 0.405545026 0.536614216 0.609026634 0.5694653 0.426602763 1 17.78406351 -9.981857211 4.20776137 1.00001949 0.610202531 0.24193825 0.210604909 93786518.89 223427972.6 28973.06191 0.050599928 1.04E-10 9.981857211 -0.389816959 HYNGEAYEDDEHHPR ddPTM_HeLa_A485_30min_R1 2 HYNGEAYEDDEHHPR 15 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 ; ; 135.47 5.27E-06 4495400000 1085680 1984910 1740520 1470720 2248000 1190190 1683480 2449600 1614160 1819390 FALSE FALSE TRUE 1327185.77 2217027.958 2384410.777 1551061.71 2024181.227 1252506.508 1323790.745 1848831.759 1938107.106 1365849.556 0.9716925 1.623186059 1.745734562 1.135602162 1.481994278 0.917016447 0.969206849 1.353613032 1.418975536 1 20.38136715 -6.23805296 24.65050137 1.143703433 1.409952874 0.203110133 0.25555268 1140.571583 1202221.85 0.087230598 0.087179106 5.78E-07 6.23805296 0.266249442 HYYSITINYR ddPTM_HeLa_A486_30min_R1 2 HYYSITINYR 10 0 O00487 O00487 PSMD14 26S proteasome non-ATPase regulatory subunit 14 0 0 ; ; 108.57 0.0025191 55599000 27372 30191 30640 10507.5 36832 27339 41467 36984 31126 30157 FALSE FALSE TRUE 25453.36415 27798.55521 42504.62857 24461.99102 32212.18712 23966.19214 31091.51801 28563.55056 33824.02674 22605.49091 1.125981482 1.229725792 1.880278944 1.082126069 1.424971802 1.060193394 1.375396718 1.263566921 1.496274815 1 14.46438563 IAAASSDLYLRPGSEQPGRPGS(ph)HGYVR ddPTM_HeLa_A485_30min_R1 1 IAAASSDLYLRPGSEQPGRPGSHGYVR 27 2 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 IAAASSDLYLRPGSEQPGRPGS(1)HGYVR 135.32 1.52E-06 248900000 123320 126370 115170 237560 132070 141120 173030 178540 103910 340580 TRUE FALSE FALSE 150752.1086 141147.8722 157776.1756 250537.3013 118920.6471 148508.825 136060.727 134752.7851 124763.7839 255679.6739 0.589613192 0.552049641 0.617085329 0.979887441 0.465115765 0.580839387 0.532153084 0.527037535 0.487969114 1 17.96397795 -10.8332924 3.517583824 1.104817587 0.595571166 0.443328439 0.136975921 206026541.5 7026182.677 174628509.2 0.03436598 1.47E-11 10.8332924 -0.509246421 IAALQAFADQLIAAGHYAK ddPTM_HeLa_A485_30min_R1 2 IAALQAFADQLIAAGHYAK 19 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 265.64 6.65E-48 119872000 162907 179171 150717 165877 221413 191139 242213 272412 165714 232044 FALSE FALSE TRUE 199145.1001 200123.4899 206473.4902 174938.4405 199368.3443 201146.7425 190462.2139 205602.5299 198971.2798 174199.7013 1.143200009 1.148816493 1.185268911 1.004240761 1.144481551 1.154690513 1.093355571 1.18026913 1.142202187 1 17.41038262 -11.31752041 2.376410623 0.247743183 1.13237348 0.39696104 0.049153999 1098212.964 614053.8687 4567071.977 0.012272854 4.81E-12 11.31752041 0.884630297 IAALQAFADQLIAAGHYAK ddPTM_HeLa_A486_30min_R1 2 IAALQAFADQLIAAGHYAK 19 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 280.65 5.33E-59 130078000 144713 140246 100080 51177.6 156867 135776 163953 161179 114002 159137 FALSE FALSE TRUE 134569.366 129132.3962 138833.6562 119144.0392 137191.2781 119025.3376 122930.2253 124482.0602 123883.7851 119288.0594 1.128104243 1.082525752 1.163852082 0.998792669 1.150083913 0.997797585 1.030532527 1.043541666 1.038526285 1 16.86409011 -5.790674065 0.636135458 1.020291495 1.126731759 0.384456247 0.047560373 0.975369067 0.840635761 0.031083598 0.05717927 1.62E-06 5.790674065 0.106440264 IAAPELHKGDS(ph)DS(ph)EEDEPTK ddPTM_HeLa_A485_30min_R1 6 IAAPELHKGDSDSEEDEPTK 20 1 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(1)DS(0.996)EEDEPT(0.004)K;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(0.999)DS(0.991)EEDEPT(0.01)K;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(1)EEDEPTK ;;;;; 203.47 2.81E-26 4268190000 3646590 2090660 1588822 7452890 3334290 2937180 5366410 3955820 2268320 9390730 TRUE FALSE FALSE 4457761.365 2335144.501 2176593.374 7860022.509 3002316.38 3090966.203 4219832.664 2985648.943 2723551.018 7049793.835 0.632325068 0.331235857 0.308745678 1.114929414 0.425872933 0.438447744 0.598575329 0.423508689 0.386330591 1 22.74914964 -10.19405042 4.444284032 1.000121666 0.518271458 0.296890273 0.222629448 305668608.6 92.39551015 394637.2604 0.054183832 6.40E-11 10.19405042 -0.481850208 IAAPELHKGDS(ph)DS(ph)EEDEPTK ddPTM_HeLa_A486_30min_R1 6 IAAPELHKGDSDSEEDEPTK 20 1 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(0.851)EEDEPT(0.149)K;IAAPELHKGDS(1)DS(1)EEDEPTK;IAAPELHKGDS(1)DS(1)EEDEPTK ;;;;; 218.6 7.24E-35 4480520000 4604600 4049930 1443850 3852530 3237640 6158480 8202790 7049820 3343090 10402530 TRUE FALSE FALSE 4281841.318 3728998.797 2002947.388 8968884.536 2831545.001 5398709.352 6150365.182 5444729.882 3632871.733 7797668.779 0.549118133 0.478219697 0.256864897 1.150200757 0.363127119 0.69234915 0.788744092 0.698250982 0.46589203 1 22.89461144 -14 0.090185967 2.117029029 0.321102042 0.199845939 0.237707953 358.9509133 2.244312357 79.33099037 5.522177395 1.00E-14 14 -1.795926987 IAAPELHKGDS(ph)DS(ph)EEDEPTKK ddPTM_HeLa_A485_30min_R1 2 IAAPELHKGDSDSEEDEPTKK 21 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(1)DS(1)EEDEPTKK;IAAPELHKGDS(1)DS(1)EEDEPTKK ; 94.856 0.00051121 895970000 332350 153636 92174 857090 291190 254150 575350 455420 153347 1017420 TRUE FALSE FALSE 406280.1109 171602.3937 126272.9983 903910.6564 262198.1012 267456.901 452421.7723 343727.5309 184122.3363 763795.9182 0.531922338 0.224670478 0.165322955 1.183445257 0.343282931 0.350168016 0.59233332 0.450025357 0.241062216 1 19.54282768 -9.913460743 4.096139632 1.000018541 0.457527852 0.260667914 0.276000197 369224666.4 794383512.3 105128.9587 0.070047825 1.22E-10 9.913460743 -0.542490689 IAAPELHKGDS(ph)DS(ph)EEDEPTKKK ddPTM_HeLa_A485_30min_R1 2 IAAPELHKGDSDSEEDEPTKKK 22 3 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(1)DS(1)EEDEPTKKK;IAAPELHKGDS(1)DS(1)EEDEPTKKK ; 170.1 2.42E-14 2875700000 315020 302355 122442 612020 364590 491650 1287480 1538120 233630 948300 TRUE FALSE FALSE 385095.1122 337712.7871 167738.391 645453.1029 328290.1394 517392.0338 1012399.38 1160893.658 280517.398 711906.2622 0.540935138 0.474378166 0.235618648 0.906654622 0.461142368 0.726769887 1.422096467 1.630683308 0.394036986 1 19.44132777 -6.586021054 5.489938809 1.160987396 0.5317765 0.399533185 0.33783811 0.19201866 11.31375021 0.12926506 0.099803126 2.59E-07 6.586021054 -0.629210896 IAAPELHKGDS(ph)DS(ph)EEDEPTKKK ddPTM_HeLa_A486_30min_R1 2 IAAPELHKGDSDSEEDEPTKKK 22 3 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(1)DS(1)EEDEPTKKK;IAAPELHKGDS(1)DS(1)EEDEPTKKK ; 150.11 6.06E-10 1112820000 392010 192290 57821 532020 209926 363000 878660 733760 117345 1313840 TRUE FALSE FALSE 364532.1233 177052.2401 80210.8397 1238569.447 183595.1236 318216.7507 658809.9745 566698.8659 127516.5591 984845.9123 0.370141277 0.17977659 0.081445065 1.257627646 0.186420151 0.323113237 0.66894726 0.575418813 0.129478691 1 19.90953849 -11.29049523 2.425402028 3.891690236 0.429113381 0.214027483 0.33343639 68108397.96 4709460.093 1091128170 0.083235199 5.12E-12 11.29049523 -3.462576855 IAASS(ph)SFR ddPTM_HeLa_A485_30min_R1 1 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 IAAS(0.01)S(0.495)S(0.495)FR 116.05 0.00095373 174360000 233830 284560 304830 201150 368380 316910 357640 408740 301040 354780 TRUE FALSE FALSE 285844.6768 317836.8167 417599.302 212138.3152 331702.7937 333502.9176 281227.2923 308495.8741 361455.9667 266339.8752 1.07323275 1.193350475 1.567918817 0.796494761 1.245411688 1.252170435 1.055896313 1.158278962 1.357122986 1 18.02290891 -10.22621468 3.473459735 0.999634518 1.187328029 0.08076441 0.191097021 62715301.54 99437813.04 260667.8443 0.045486845 5.94E-11 10.22621468 0.187693512 IAASS(ph)SFR ddPTM_HeLa_A486_30min_R1 1 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 IAAS(0.073)S(0.608)S(0.319)FR 94.85 0.0031256 531540000 852760 1146400 1102300 358060 1228400 958500 1265800 1425400 784030 918770 TRUE FALSE FALSE 792985.9277 1055555.089 1529140.081 833581.7754 1074322.618 840250.0153 949083.4517 1100867.536 851990.3517 688704.0118 1.151417611 1.532668709 2.220315338 1.210362886 1.559919209 1.220045188 1.378071618 1.5984625 1.237092186 1 19.39352456 IAASSS(ph)FR ddPTM_HeLa_A485_30min_R1 8 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 IAAS(0.044)S(0.241)S(0.715)FR;IAASS(0.003)S(0.997)FR;IAASS(0.003)S(0.997)FR;IAAS(0.005)S(0.025)S(0.971)FR;IAASS(0.018)S(0.982)FR;IAAS(0.087)S(0.298)S(0.615)FR;IAAS(0.003)S(0.021)S(0.976)FR;IAAS(0.061)S(0.3)S(0.639)FR ;;;;;;; 146.68 0.00030569 19739220000 22116662 28853410 27778190 19052334 34605460 28748170 36245610 40250930 31908460 32694010 TRUE FALSE FALSE 27036437.16 32227565.31 38054498.43 20093114.76 31160018.9 30253379.73 28501439.32 30379326.31 38312195.24 24543995 1.101549979 1.313052961 1.55046065 0.818657059 1.269557743 1.232618395 1.161238801 1.237749857 1.560960033 1 24.54886676 -7.542808509 24.99532406 1.320104902 1.211597874 0.011527959 0.214114391 938.9948173 1177636.908 0.139348069 0.052681934 2.87E-08 7.542808509 -0.108507028 IAASSS(ph)FR ddPTM_HeLa_A486_30min_R1 6 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 IAAS(0.046)S(0.308)S(0.646)FR;IAAS(0.02)S(0.199)S(0.781)FR;IAAS(0.001)S(0.023)S(0.977)FR;IAASS(0.002)S(0.998)FR;IAASS(0.003)S(0.997)FR;IAAS(0.01)S(0.08)S(0.91)FR ;;;;; 166.66 3.06E-05 15928110000 9077020 11690130 9557500 3876660 11715010 10311220 13105850 14497340 8383990 9559250 TRUE FALSE FALSE 8440767.772 10763761.52 13258419.96 9025060.396 10245604.21 9039126.513 9826627.71 11196612.16 9110721.004 7165551.58 1.177964833 1.502153938 1.850299982 1.259506724 1.429841666 1.261469743 1.371370731 1.5625611 1.271461227 1 22.77264633 -12.2830928 0.263482097 1.23E-10 1.460939873 0.314908239 0.184388778 90.13819611 2.003701976 49.3963155 0.252375365 5.21E-13 12.2830928 1.460939872 IAAVHNVPLSVLIRPLPSVLDPAK ddPTM_HeLa_A485_30min_R1 1 IAAVHNVPLSVLIRPLPSVLDPAK 24 1 Q9BYN0 Q9BYN0 SRXN1 Sulfiredoxin-1 0 0 161.8 6.35E-21 5207100 8068.4 6225.2 4797.3 7293 8293.2 9186.6 13248 13983 4809.2 11036 FALSE FALSE TRUE 9863.187744 6953.182988 6572.020902 7691.398123 7467.499889 9667.596171 10417.45657 10553.64733 5774.362327 8284.928303 1.190497658 0.839256869 0.793250184 0.928360252 0.901335487 1.166889539 1.257398519 1.273836893 0.696971913 1 13.0162735 -6.253117151 24.22110305 1.107282876 0.917720468 0.132217043 0.181695094 684.2062997 1991321.526 0.060634312 0.05961309 5.58E-07 6.253117151 -0.189562408 IAAYLFK ddPTM_HeLa_A485_30min_R1 2 IAAYLFK 7 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KRF5;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 110.24 0.020327 47670000 61820 68925 70653 75347 101281 68622 89102 85743 72874 111169 FALSE FALSE TRUE 75571.64572 76985.17918 96790.48482 79463.01582 91197.10802 72214.94181 70064.6298 64714.39481 87499.14336 83456.61421 0.905520149 0.922457494 1.159770088 0.952147611 1.092748716 0.865299204 0.839533576 0.775425596 1.048438691 1 16.34873877 -6.282241676 24.46858784 0.887565638 1.007350415 0.184342955 0.102492967 918.8903186 1080835.744 0.035798456 0.031608518 5.22E-07 6.282241676 0.119784778 IAAYLFK ddPTM_HeLa_A486_30min_R1 2 IAAYLFK 7 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;J3KRF5;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 142.42 0.0036498 83302000 65572 72029 47694 24073.4 74714 67588 76994 74763 56553 71201 FALSE FALSE TRUE 60975.74141 66321.15971 66162.39409 56044.0918 65342.67344 59249.67974 57729.28684 57741.09696 61455.05957 53371.80616 1.142471012 1.242625358 1.239650648 1.050069238 1.224291965 1.110130685 1.081643868 1.081865148 1.151451749 1 15.70379021 -6.454725509 0.060960385 0.717349244 1.55054225 0.437858452 0.059271368 49.57461682 1.416828103 8.21601521 10.76510984 3.51E-07 6.454725509 0.833193006 IACDEEFS(ph)DS(ph)EDEGEGGR ddPTM_HeLa_A485_30min_R1 2 IACDEEFSDSEDEGEGGR 18 0 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 2 0 IACDEEFS(1)DS(1)EDEGEGGR;IACDEEFS(1)DS(1)EDEGEGGR ; 244.32 3.56E-45 481350000 509270 497580 532880 731560 670990 411520 583510 459360 561380 868480 TRUE FALSE FALSE 622555.3545 555767.6526 730014.487 771523.2704 604183.8796 433066.5509 458838.3217 346701.2398 674043.8167 651983.9192 0.954863051 0.852425399 1.119681737 1.183347085 0.926685248 0.664228884 0.703757114 0.531763483 1.033835033 1 19.31447686 -6.054029648 5.658348398 0.754715981 1.025842233 0.31751199 0.163576279 0.228941648 16.31550505 0.054244284 0.055263065 8.83E-07 6.054029648 0.271126253 IACDEEFS(ph)DS(ph)EDEGEGGR ddPTM_HeLa_A486_30min_R1 2 IACDEEFSDSEDEGEGGR 18 0 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 2 0 IACDEEFS(1)DS(1)EDEGEGGR;IACDEEFS(1)DS(1)EDEGEGGR ; 157.74 1.54E-08 1072780000 777700 1194480 880610 370250 1111350 1112710 1088830 1083400 1134710 1058180 TRUE FALSE FALSE 723187.246 1099825.055 1221605.776 861960.7114 971954.1201 975435.1534 816393.2175 836733.4705 1233067.576 793204.8404 0.911728231 1.386558678 1.540088655 1.086681104 1.225350717 1.229739285 1.029233782 1.054876909 1.554538643 1 19.59733396 IACDEEFS(ph)DS(ph)EDEGEGGRR ddPTM_HeLa_A485_30min_R1 7 IACDEEFSDSEDEGEGGRR 19 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 2 0 IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR ;;;;;; 201.29 7.16E-26 35411690000 2960540 3556190 3960840 3631790 5106060 3397550 4650950 4771720 3729170 4718430 TRUE FALSE FALSE 3619101.909 3972055.486 5426119.54 3830185.492 4597682.738 3575440.464 3657236.538 3601448.188 4477580.213 3542212.237 1.021706681 1.121348812 1.531844841 1.081297572 1.2979693 1.009380643 1.032472447 1.016722869 1.264063222 1 21.75621923 -6.267716679 24.95022073 1.063569552 1.216499603 0.193963415 0.148894045 848.6374822 3373047.646 0.052133083 0.0470952 5.40E-07 6.267716679 0.152930051 IACDEEFS(ph)DS(ph)EDEGEGGRR ddPTM_HeLa_A486_30min_R1 7 IACDEEFSDSEDEGEGGRR 19 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 2 0 IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR ;;;;;; 167.61 7.37E-13 35572080000 5859940 7059930 6319140 2819747 9251740 6965070 8081700 8280500 6271310 6660940 TRUE FALSE FALSE 5449188.467 6500475.435 8766080.24 6564513.518 8091300.5 6105790.479 6059573.18 6395210.912 6814912.2 4992997.269 1.091366202 1.301918484 1.755674952 1.314744064 1.620529727 1.222870783 1.213614359 1.280836053 1.364894037 1 22.25147469 -6.340821372 24.99886087 1.233817919 1.423616546 0.214794573 0.189916331 188.7116224 59426.96968 0.067461614 0.059495553 4.56E-07 6.340821372 0.189798628 IACDEEFS(ph)DSEDEGEGGRR ddPTM_HeLa_A485_30min_R1 3 IACDEEFSDSEDEGEGGRR 19 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 1 0 IACDEEFS(0.998)DS(0.002)EDEGEGGRR;IACDEEFS(0.999)DS(0.001)EDEGEGGRR;IACDEEFS(0.983)DS(0.017)EDEGEGGRR ;; 259.93 2.38E-58 815960000 364365 467307 508955 474287 702980 517007 567361 637041 561619 662620 TRUE FALSE FALSE 445416.7372 521954.4886 697238.6339 500196.0979 632988.8429 544076.6871 446139.6874 480805.6959 674330.7818 497441.0286 0.895416163 1.049279128 1.401650837 1.005538484 1.272490218 1.09375113 0.896869502 0.966558181 1.355599444 1 18.92416598 -6.526268049 24.98088436 1.043875737 1.134791721 0.032324228 0.172678809 349.7020088 2577429.543 0.066040896 0.051426738 2.98E-07 6.526268049 0.090915984 IACDEEFS(ph)DSEDEGEGGRR ddPTM_HeLa_A486_30min_R1 3 IACDEEFSDSEDEGEGGRR 19 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 1 0 IACDEEFS(0.988)DS(0.012)EDEGEGGRR;IACDEEFS(0.987)DS(0.013)EDEGEGGRR;IACDEEFS(1)DSEDEGEGGRR ;; 278.58 9.07E-70 1616470000 704161 830220 738653 296881 1137080 844440 865870 925820 789420 1012010 TRUE FALSE FALSE 654802.9502 764430.3436 1024679.223 691153.9715 994456.8235 740261.5784 649220.1678 715030.9965 857847.5612 758596.1089 0.863177312 1.007690831 1.350757289 0.91109612 1.31091738 0.975830972 0.855817951 0.9425714 1.130835699 1 19.53297245 -6.47404519 24.99861285 0.968706256 1.094360481 0.101959546 0.157439315 819.1111541 419315.1764 0.055014515 0.048517319 3.36E-07 6.47404519 0.125654225 IACEEEFS(ph)DS(ph)EEEGEGGR ddPTM_HeLa_A485_30min_R1 2 IACEEEFSDSEEEGEGGR 18 0 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 0 IACEEEFS(1)DS(1)EEEGEGGR;IACEEEFS(1)DS(1)EEEGEGGR ; 180.1 2.23E-17 987150000 966580 1097890 1215740 1227670 1542280 1019130 1346250 1286130 1222620 1554920 TRUE FALSE FALSE 1181592.386 1226278.685 1665492.817 1294734.503 1388725.188 1072490.071 1058612.69 970704.6009 1467988.619 1167307.06 1.012237848 1.050519377 1.426782099 1.109163602 1.189682848 0.918772881 0.906884509 0.831576056 1.25758566 1 20.15475268 -6.257276832 24.78392017 0.967682365 1.163979029 0.255545859 0.147760331 426.3161015 2538303.419 0.050161241 0.04844245 5.53E-07 6.257276832 0.196296664 IACEEEFS(ph)DS(ph)EEEGEGGR ddPTM_HeLa_A486_30min_R1 2 IACEEEFSDSEEEGEGGR 18 0 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 0 IACEEEFS(1)DS(1)EEEGEGGR;IACEEEFS(1)DS(1)EEEGEGGR ; 171.71 4.63E-12 1488350000 958560 1292790 1078650 487220 1461850 1193890 1331400 1318730 1135060 1214100 TRUE FALSE FALSE 891369.894 1190344.612 1496332.167 1134272.783 1278491.142 1046599.99 998269.6379 1018483.967 1233447.915 910081.4575 0.979439683 1.307953922 1.644173887 1.246342043 1.404809571 1.150006938 1.096901414 1.119112974 1.355315949 1 19.79563616 -6.278442227 22.67026645 1.14875157 1.330368164 0.194404317 0.174095803 415.762745 554341.9156 0.062365714 0.055195299 5.27E-07 6.278442227 0.181616594 IACEEEFS(ph)DS(ph)EEEGEGGRK ddPTM_HeLa_A485_30min_R1 5 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 0 IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK ;;;; 163.64 1.01E-12 14837110000 6825390 5645360 4743750 10747570 9052090 6545240 10839270 9747910 5983530 13499020 TRUE FALSE FALSE 8343674.458 6305535.744 6498660.529 11334682.53 8150832.136 6887938.646 8523371.416 7357219.788 7184369.587 10133962.75 0.823337787 0.622218169 0.641275352 1.118484725 0.804308476 0.67968857 0.841069938 0.725996333 0.708939806 1 23.27269509 -11.27741703 2.20851631 1.925016286 0.774382324 0.201208169 0.135132584 6239830.904 1085932.794 28732945.15 0.035464827 5.28E-12 11.27741703 -1.150633962 IACEEEFS(ph)DS(ph)EEEGEGGRK ddPTM_HeLa_A486_30min_R1 6 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 0 IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK ;;;;; 160.77 1.20E-12 18874280000 5462600 6453810 3360610 3603550 6197150 7027360 9356210 8566040 4778560 8858590 TRUE FALSE FALSE 5079699.949 5942386.591 4661928.192 8389246.513 5419845.661 6160395.772 7015187.298 6615739.687 5192769.428 6640341.404 0.76497572 0.894891728 0.702061522 1.263375782 0.81619985 0.927722748 1.056449792 0.996295113 0.782003381 1 22.66282599 IACEEEFS(ph)DSEEEGEGGR ddPTM_HeLa_A485_30min_R1 1 IACEEEFSDSEEEGEGGR 18 0 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IACEEEFS(0.985)DS(0.015)EEEGEGGR 104.45 6.43E-05 0 12412 21686 21251 18071 29350 17463 24249 23212 19203 24186 TRUE FALSE FALSE 15173.00658 24221.98906 29112.62923 19058.17297 26427.81095 18377.33568 19068.00305 17519.2206 23056.86596 18156.87531 0.835661771 1.334039511 1.603394237 1.04963947 1.455526377 1.012141977 1.050180867 0.964880813 1.269869709 1 14.14822832 -6.290577624 24.58469854 1.056642584 1.267881004 0.176434371 0.21111992 995.0852154 839576.1194 0.073532746 0.064859801 5.12E-07 6.290577624 0.21123842 IACEEEFS(ph)DSEEEGEGGR ddPTM_HeLa_A486_30min_R1 1 IACEEEFSDSEEEGEGGR 18 0 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IACEEEFS(1)DSEEEGEGGR 210.1 1.26E-25 69320000 29220 38225 34471 12107 46601 34551 35963 42109 38192 34692 TRUE FALSE FALSE 27171.82889 35195.91179 47819.09437 28185.70785 40755.86804 30288.44891 26964.67702 32521.69993 41502.51331 26004.89739 1.044873528 1.35343398 1.838849569 1.083861529 1.567238179 1.164720954 1.036907649 1.250599048 1.595949897 1 14.66649573 -6.297116288 24.87499179 1.21450244 1.385606512 0.094325764 0.259506836 1492.52659 1040629.197 0.091660341 0.080839777 5.05E-07 6.297116288 0.171104072 IACEEEFS(ph)DSEEEGEGGRK ddPTM_HeLa_A485_30min_R1 2 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IACEEEFS(0.989)DS(0.011)EEEGEGGRK;IACEEEFS(0.976)DS(0.024)EEEGEGGRK ; 204.5 7.32E-26 1211190000 368840 363880 302150 549790 500310 460490 621030 656150 348920 717970 TRUE FALSE FALSE 450887.1855 406432.6007 413927.8585 579823.6356 450497.3797 484600.5443 488341.8672 495228.1837 418945.0435 538993.2923 0.836535801 0.754058736 0.767964768 1.075752971 0.83581259 0.899084555 0.906025871 0.918802128 0.777273205 1 19.03990779 IACEEEFS(ph)DSEEEGEGGRK ddPTM_HeLa_A486_30min_R1 1 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IACEEEFS(0.998)DS(0.002)EEEGEGGRK 186.06 1.92E-18 695230000 191820 246880 136920 132730 209430 266960 300570 297640 155190 309140 TRUE FALSE FALSE 178374.4086 227316.3297 189939.0908 309002.1478 183161.3365 234025.1895 225364.2069 229873.8694 168641.9942 231729.3318 0.76975326 0.980956221 0.819659252 1.333461523 0.79041067 1.009907497 0.972532071 0.991992976 0.727754198 1 17.82208114 -9.848133133 13.74782748 0.999998508 0.943770683 0.010697572 0.166323939 0 0 0.152941679 0.037093806 1.42E-10 9.848133133 -0.056227825 IACKS(ph)PPPESMDTPTSTR ddPTM_HeLa_A485_30min_R1 1 IACKSPPPESMDTPTSTR 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IACKS(1)PPPESMDTPTSTR 80.061 0.00026682 0 99192 105070 72564 116770 126130 83463 158830 241490 103900 306320 TRUE FALSE FALSE 121256.9182 117357.0225 99408.44324 123148.8494 113572.0543 87832.99362 124894.673 182264.1989 124751.777 229960.0614 0.527295555 0.510336542 0.432285687 0.535522772 0.4938773 0.381948905 0.543114627 0.792590669 0.542493232 1 17.8110238 -8.341072438 0.584802357 1.008028892 0.476815863 0.734662944 0.089556017 0.688848832 0.472510373 0.108693307 0.040495606 4.56E-09 8.341072438 -0.531213029 IACKS(ph)PPPESMDTPTSTR ddPTM_HeLa_A486_30min_R1 1 IACKSPPPESMDTPTSTR 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IACKS(1)PPPESMDTPTSTR 61.222 0.0023654 0 142310 133460 82559 52183 143970 169030 185700 148980 89095 223940 TRUE FALSE FALSE 132334.8039 122884.1435 114528.0558 121484.6612 125911.9401 148176.7972 139235.8959 115060.5062 96817.82634 167863.9664 0.788345508 0.73204599 0.682267066 0.723708988 0.750083194 0.882719504 0.829456725 0.685438982 0.576763605 1 17.35693305 -6.0074901 24.04828384 0.781713038 0.729200472 0.06587129 0.108232648 804.5613816 2583206.493 0.035142227 0.038210004 9.83E-07 6.0074901 -0.052512566 IACKS(ph)PPPESVDTPTSTK ddPTM_HeLa_A485_30min_R1 3 IACKSPPPESVDTPTSTK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IACKS(1)PPPESVDTPTSTK;IACKS(1)PPPESVDTPTSTK;IACKS(1)PPPESVDTPTSTK ;; 215.79 1.45E-34 1252980000 629660 567560 316003 1087480 757000 541750 1058480 1542950 729990 2734580 TRUE FALSE FALSE 769725.6947 633931.2049 432905.6597 1146886.279 681630.422 570115.1923 832327.101 1164539.093 876492.2971 2052899.532 0.374945623 0.308797968 0.210875229 0.55866654 0.332033015 0.277712174 0.405439764 0.567265507 0.426953333 1 20.96923159 -9.939261965 0.327231049 1.306623804 0.316404964 0.793814992 0.097047875 5.854317152 0.516510446 1.788600812 0.09341836 1.15E-10 9.939261965 -0.99021884 IACRS(ph)PQPDPVGTPTIFKPQSK ddPTM_HeLa_A485_30min_R1 1 IACRSPQPDPVGTPTIFKPQSK 22 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IACRS(1)PQPDPVGTPTIFKPQSK 107.19 7.77E-05 731570000 419120 442700 270250 553750 524930 359320 628640 1078000 588160 1488800 TRUE FALSE FALSE 512351.7981 494469.914 370226.721 583999.9603 472666.1261 378133.4396 494325.9285 813618.8098 706198.3171 1117669.559 0.458410801 0.442411543 0.331248819 0.522515761 0.422903283 0.338323108 0.442282716 0.727960069 0.631848932 1 20.09206229 -7.897000204 0.902198779 0.987690492 0.413762344 0.8352716 0.078981453 0.212052136 0.388347411 0.075398118 0.026811657 1.27E-08 7.897000204 -0.573928148 IADGSVK ddPTM_HeLa_A485_30min_R1 2 IADGSVK 7 0 P52895;B4DK69;S4R3P0;P52895-2;Q04828;H0Y804;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ; ; 143.23 0.0035886 68951000 219975 215094 145109 272190 189850 231554 294060 313240 231580 402390 FALSE FALSE TRUE 268907.6798 240247.3722 198790.8576 287059.0505 170947.8674 243677.8094 231231.6788 236417.3989 278055.9818 302081.5784 0.890182318 0.795306266 0.65807011 0.950269963 0.565899676 0.806662262 0.765461039 0.78262766 0.920466528 1 18.20457868 -7.884539642 2.73502394 0.998815985 0.771415998 0.354939137 0.101564655 0.257568358 3.861106443 0.091861438 0.025093144 1.30E-08 7.884539642 -0.227399987 IADPEHDHTGFLT(ph)EYVATR ddPTM_HeLa_A485_30min_R1 1 IADPEHDHTGFLTEYVATR 19 0 B3KR49;E9PJF0;E9PQW4;P27361-2;P27361-3;P27361 B3KR49 MAPK3 Mitogen-activated protein kinase;Mitogen-activated protein kinase 3 1 0 IADPEHDHTGFLT(0.894)EY(0.106)VATR 235.92 2.29E-45 441020000 238910 269210 264310 207870 244170 265810 284290 248880 178920 223670 TRUE FALSE FALSE 292054.7053 300691.7677 362089.2679 219225.4117 219859.5775 279727.4006 223549.1191 187841.7898 214827.6028 167913.1853 1.739319665 1.790757331 2.156407593 1.305587833 1.30936458 1.665904914 1.331337492 1.118683976 1.279396865 1 17.357356 -5.936361004 0.35481222 1.013426921 2.053883349 0.612707189 0.209907119 1.512238914 0.346028942 0.247170891 0.609255384 1.16E-06 5.936361004 1.040456429 IADPEHDHTGFLTEY(ph)VATR ddPTM_HeLa_A485_30min_R1 1 IADPEHDHTGFLTEYVATR 19 0 B3KR49;E9PJF0;E9PQW4;P27361-2;P27361-3;P27361 B3KR49 MAPK3 Mitogen-activated protein kinase;Mitogen-activated protein kinase 3 1 0 IADPEHDHTGFLTEY(1)VATR 174.49 2.24E-13 223750000 77446 106000 97144 74265 93366 91208 100950 89365 66863 91022 TRUE FALSE FALSE 94673.59551 118395.7779 133081.6081 78321.9089 84070.15321 95983.50985 79381.20781 67448.09363 80281.7908 68331.89054 1.385496505 1.732657724 1.94757685 1.146198478 1.230320902 1.404666388 1.16170074 0.987066114 1.174880282 1 16.06027142 -5.277920312 24.91919746 1.170760504 1.69298509 0.676099942 0.168167979 452.777951 684600.0347 0.049254666 0.073291777 5.27E-06 5.277920312 0.522224586 IADPEHDHTGFLTEY(ph)VATR ddPTM_HeLa_A486_30min_R1 4 IADPEHDHTGFLTEYVATR 19 0 B3KR49;E9PJF0;E9PQW4;P27361-2;P27361-3;P27361 B3KR49 MAPK3 Mitogen-activated protein kinase;Mitogen-activated protein kinase 3 1 0 IADPEHDHTGFLT(0.009)EY(0.983)VAT(0.009)R;IADPEHDHTGFLT(0.002)EY(0.997)VATR;IADPEHDHTGFLTEY(1)VATR;IADPEHDHTGFLTEY(1)VATR ;;; 218.43 4.71E-35 787950000 648400 601311 413363 227335 635047 564127 636289 704930 550015 775460 TRUE FALSE FALSE 602950.5083 553660.9264 573428.2238 529247.3689 555393.4837 494530.7464 477082.7622 544432.8275 597690.7431 581279.7686 1.037281084 0.952486146 0.986492658 0.910486477 0.955466737 0.850762014 0.820745514 0.93661066 1.028232489 1 19.14887317 -4.143890775 0.894016028 0.92004758 1.108750236 0.193019818 0.060831395 4.226835947 2.314530048 0.022475986 0.819413969 7.18E-05 4.143890775 0.188702656 IAEGVNSLLQMAGLLAR ddPTM_HeLa_A485_30min_R1 1 IAEGVNSLLQMAGLLAR 17 0 A0A087WVY3;P35250-2;P35250 A0A087WVY3 RFC2 Replication factor C subunit 2 0 0 115.8 8.52E-05 11976000 9544.8 9714.8 9844 10570 14216 7586.7 11109 8396.9 8296.7 14823 FALSE FALSE TRUE 11668.00783 10850.86135 13485.70524 11147.41234 12800.60512 7983.927881 8735.471398 6337.547109 9961.771588 11127.8989 1.04853647 0.975104236 1.211882438 1.00175356 1.150316447 0.717469484 0.785006359 0.569518754 0.895206874 1 13.4418936 -6.264447773 24.997565 0.766008086 1.075084431 0.56369608 0.123782613 178.0919656 1479809.339 0.040504852 0.037247553 5.44E-07 6.264447773 0.309076345 IAEK(ac)GSTIETEQKEDKGEDSEPVTSK ddPTM_HeLa_A485_30min_R1 1 IAEKGSTIETEQKEDKGEDSEPVTSK 26 3 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 0 1 IAEK(0.999)GSTIETEQK(0.001)EDKGEDSEPVTSK 117.03 4.42E-08 17051000 5757.8 2640.4 1233.4 11898 5159.4 7237.2 14484 14546 5272.8 34807 FALSE TRUE FALSE 7038.602746 2949.171812 1689.685986 12547.95761 4645.71202 7616.128601 11389.37508 10978.57069 6331.002595 26130.25548 0.269366013 0.112864255 0.064663967 0.480207996 0.177790532 0.29146782 0.435869258 0.420147851 0.242286288 1 14.67343361 -14 0.184992349 4.036724072 0.137793417 0.766829268 0.122214939 62.75425875 0.609121397 70.0143666 0.357284295 1.00E-14 14 -3.898930655 IAEPS(ph)VCGR ddPTM_HeLa_A486_30min_R1 1 IAEPSVCGR 9 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IU45 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 IAEPS(1)VCGR 82.029 0.0068463 322250000 213270 282950 197940 111360 282220 309870 328540 345590 244060 326520 TRUE FALSE FALSE 198320.8743 260528.0115 274587.669 259251.7078 246821.336 271641.3899 246335.8171 266906.7012 265215.3173 244757.2667 0.810275736 1.064434225 1.121877494 1.059219656 1.008433128 1.109839939 1.006449452 1.090495513 1.083585059 1 17.90099217 -4.261292143 23.70499093 1.063416214 0.810275595 0.767740121 0.041257205 2.549376236 409594.8278 0.009842874 0.055206319 5.48E-05 4.261292143 -0.253140619 IAESNHIK ddPTM_HeLa_A485_30min_R1 2 IAESNHIK 8 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 78.334 0.023923 47356000 60682 78359 72029 36180 100112 73000 88127 115955 73689 92383 FALSE FALSE TRUE 74180.50155 87522.40342 98675.52448 38156.42179 90144.49777 76822.16712 69297.94652 87516.85444 88477.70638 69353.61828 1.069598146 1.26197314 1.422788413 0.550172042 1.299780747 1.107687948 0.999197277 1.26189313 1.275747518 1 16.08168353 IAFAITAIK ddPTM_HeLa_A485_30min_R1 2 IAFAITAIK 9 0 P62269;A0A0G2JQH2;Q5GGW2 P62269 RPS18 40S ribosomal protein S18 0 0 ; ; 198.07 2.18E-11 81409000 205213 200902 192024 261900 304870 235850 317270 325190 170886 327690 FALSE FALSE TRUE 250861.9239 224395.7413 263061.6684 276206.9338 274516.0723 248198.7413 249482.6726 245436.6426 205181.2527 246002.9137 1.01975184 0.912167006 1.06934371 1.122779115 1.115905776 1.008926023 1.014145194 0.997698112 0.834060254 1 17.90831588 -7.56239048 7.595056083 0.915558319 1.036895219 0.332714497 0.067531924 0.268416551 42.12359372 0.048691237 0.018327707 2.74E-08 7.56239048 0.1213369 IAFAITAIK ddPTM_HeLa_A486_30min_R1 2 IAFAITAIK 9 0 P62269;A0A0G2JQH2;Q5GGW2 P62269 RPS18 40S ribosomal protein S18 0 0 ; ; 183.9 5.08E-08 73942000 243170 261310 187123 105697 275980 260890 329790 290670 239630 297780 FALSE FALSE TRUE 226125.0387 240602.8439 259582.0369 246067.9576 241364.015 228704.0443 247273.0538 224490.7863 260401.3213 223213.9498 1.013041698 1.077902363 1.162929276 1.102386109 1.081312415 1.024595661 1.107784948 1.005720236 1.166599675 1 17.76806767 -6.007808794 23.47267975 1.062973048 1.093331792 0.049436743 0.057509351 540.921961 1625984.662 0.017823184 0.019336025 9.82E-07 6.007808794 0.030358744 IAGEASR ddPTM_HeLa_A485_30min_R1 2 IAGEASR 7 0 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;P23527;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BO;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ; ; 180.49 4.79E-05 196875000 268810 265780 144505 331010 131393 372950 234140 377270 275840 382600 FALSE FALSE TRUE 328605.8571 296860.659 197963.4129 349092.2381 118311.0516 392477.0853 184114.0763 284743.941 331198.5578 287224.8612 1.144071776 1.033547924 0.689227987 1.215397012 0.411910902 1.366445382 0.641010237 0.991362446 1.153098504 1 18.1318211 -7.526562376 24.5274192 1.075109763 0.923347705 0.04400822 0.273917755 298.9440711 1990388.805 0.168959178 0.064554772 2.97E-08 7.526562376 -0.151762057 IAGPGLGS(ph)GVR ddPTM_HeLa_A485_30min_R1 2 IAGPGLGSGVR 11 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 IAGPGLGS(1)GVR;IAGPGLGS(1)GVR ; 127.17 5.49E-05 377680000 355370 415930 372440 403930 530930 422870 523120 589710 400610 548410 TRUE FALSE FALSE 434420.8305 464569.3954 510221.0545 425995.6731 478068.745 445010.8193 411351.1385 445082.6979 481008.7524 411701.4797 1.05518404 1.128413227 1.239298569 1.034719801 1.161202397 1.080906534 0.999149041 1.081081123 1.168343511 1 18.65123911 -6.503150359 22.15961687 1.064775579 1.125049764 0.155199392 0.068488497 351.3646585 394667.4455 0.024412053 0.021164606 3.14E-07 6.503150359 0.060274185 IAGPGLGS(ph)GVR ddPTM_HeLa_A486_30min_R1 1 IAGPGLGSGVR 11 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 IAGPGLGS(1)GVR 95.507 0.0020256 343600000 189820 204570 156830 85684 233440 210840 227870 244790 150120 242490 TRUE FALSE FALSE 176514.5982 188359.1282 217558.7761 199476.6822 204159.7785 184828.7045 170854.5158 189056.6607 163132.5225 181768.9257 0.971093368 1.036255936 1.196897518 1.097419053 1.123183062 1.016833344 0.939954479 1.040093405 0.897472007 1 17.47174606 -6.469863802 4.668408382 0.972921334 1.088565748 0.416618954 0.064540604 0.221575769 10.29247933 0.02459597 0.020914559 3.39E-07 6.469863802 0.115644414 IAGYVTHLMK ddPTM_HeLa_A485_30min_R1 2 IAGYVTHLMK 10 0 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 RPS17 40S ribosomal protein S17 0 0 ; ; 147.51 0.00020964 70109000 201669 229360 180083 208400 272190 250010 301920 341280 201176 298180 FALSE FALSE TRUE 246529.5733 256181.6568 246703.1956 219784.3643 245089.8079 263100.137 237412.3255 257580.5449 241550.1779 223849.2136 1.10131981 1.144438494 1.102095431 0.981841128 1.094887956 1.175345371 1.060590394 1.150687736 1.079075392 1 17.77216772 -11.73499389 1.363895784 2.56E-05 1.099434267 0.251543057 0.051183397 390569.9139 15570.81439 1200230.24 0.014362728 1.84E-12 11.73499389 1.099408627 IAGYVTHLMK ddPTM_HeLa_A486_30min_R1 3 IAGYVTHLMK 10 0 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 RPS17 40S ribosomal protein S17 0 0 ;; ;; 136.33 0.00050671 69694000 322162 324796 248102 122521 465304 324601 375769 366660 296209 385536 FALSE FALSE TRUE 299580.1074 299057.9821 344173.7388 285235.0799 406941.2335 284555.0289 281747.6217 283179.5221 321884.6346 288995.2762 1.036626312 1.034819621 1.190932057 0.986988727 1.40812417 0.984635571 0.974921201 0.979875955 1.113805869 1 18.14068639 IAHIPLYFVNAQFPR ddPTM_HeLa_A485_30min_R1 1 IAHIPLYFVNAQFPR 15 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 0 0 146.5 3.42E-05 0 16429 16877 17968 19248 25818 16968 21612 23286 14934 24690 FALSE FALSE TRUE 20083.57437 18850.61834 24615.11091 20299.4695 23247.46927 17856.41824 16994.41965 17575.07199 17931.11682 18535.23739 1.08353478 1.01701521 1.32801703 1.095182602 1.254230997 0.96337683 0.916870893 0.948197837 0.967406915 1 14.17798297 -6.318238262 9.672116165 0.952999494 1.154052683 0.574261577 0.084477433 0.406811426 67.51759878 0.0297936 0.026283324 4.81E-07 6.318238262 0.201053189 IAHIPLYFVNAQFPR ddPTM_HeLa_A486_30min_R1 2 IAHIPLYFVNAQFPR 15 0 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 0 0 ; ; 188.29 1.15E-11 37453000 36424 35594 30912 13157.5 44059 33842 43049 38767 35007 44005 FALSE FALSE TRUE 33870.86569 32773.40181 42881.95425 30631.32494 38532.70939 29666.91812 32277.68487 29940.60038 38041.43495 32985.86158 1.026829801 0.993559066 1.300010132 0.928619823 1.168158343 0.899382848 0.978530902 0.907679804 1.153264857 1 15.00956017 -6.262908376 24.99428192 0.981424124 1.08187336 0.147117974 0.114628217 258.2394177 4393789.427 0.037918473 0.035219514 5.46E-07 6.262908376 0.100449235 IAHIPLYFVNAQFPRFS(ph)PVLGR ddPTM_HeLa_A485_30min_R1 2 IAHIPLYFVNAQFPRFSPVLGR 22 1 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 IAHIPLYFVNAQFPRFS(1)PVLGR;IAHIPLYFVNAQFPRFS(1)PVLGR ; 254.68 2.59E-59 1112870000 134987 290810 232190 115177 330870 403280 521790 928200 147793 202163 TRUE FALSE FALSE 165014.3925 324817.6998 318086.7432 121468.8279 297927.421 424395.1172 410305.3039 700557.4946 177453.6995 151767.4846 1.087284229 2.140232478 2.095882026 0.800361343 1.963051715 2.796350735 2.703512579 4.615991998 1.169247154 1 17.21150321 -6.122735308 4.28647721 2.69422705 1.591964253 0.133240274 1.01778468 0.375770104 11.36536301 0.332023136 0.334567136 7.54E-07 6.122735308 -1.102262796 IAHIPLYFVNAQFPRFS(ph)PVLGR ddPTM_HeLa_A486_30min_R1 2 IAHIPLYFVNAQFPRFSPVLGR 22 1 Q9NRG9;Q9NRG9-2;F8VZ44 Q9NRG9 AAAS Aladin 1 0 IAHIPLYFVNAQFPRFS(1)PVLGR;IAHIPLYFVNAQFPRFS(1)PVLGR ; 215.68 5.64E-36 896710000 69039 91379 129082 63791 264430 102155 182091 205657 90364 126147 TRUE FALSE FALSE 64199.72262 84137.79524 179066.0073 148508.6718 231262.7237 89552.15474 136529.9058 158833.3906 98196.82428 94558.97012 0.678938471 0.88979179 1.893696675 1.570540284 2.445698419 0.947050868 1.443859907 1.679728431 1.038471804 1 16.5289267 -7.791176101 17.55299439 1.019182918 1.461282517 0.105610105 0.491920144 22.33547768 13169.66833 0.490324994 0.127148949 1.62E-08 7.791176101 0.442099599 IAILGFAFK ddPTM_HeLa_A485_30min_R1 2 IAILGFAFK 9 0 O60701;O60701-3;O60701-2 O60701 UGDH UDP-glucose 6-dehydrogenase 0 0 ; ; 168.38 5.46E-06 107872000 405200 284920 288800 409660 428580 395550 573820 490680 207241 593350 FALSE FALSE TRUE 495335.3421 318238.9155 395639.138 432038.6885 385909.0704 416260.3864 451218.6693 370339.9606 248832.3678 445438.7648 1.112016693 0.714439202 0.888200959 0.96991713 0.866357176 0.934495197 1.012975756 0.831404875 0.558623064 1 18.76486759 -7.521479551 24.99297874 0.75121235 0.918321316 0.156574182 0.139126718 85.17573356 1521611.166 0.085320974 0.033219596 3.01E-08 7.521479551 0.167108966 IAILGFAFK ddPTM_HeLa_A486_30min_R1 2 IAILGFAFK 9 0 O60701;O60701-3;O60701-2 O60701 UGDH UDP-glucose 6-dehydrogenase 0 0 ; ; 168.38 5.46E-06 95894000 221970 346660 304310 156525 392580 440810 538800 443180 391410 474230 FALSE FALSE TRUE 206411.0493 319189.3991 422146.9817 364398.1103 343338.9557 386427.344 403986.5412 342277.5886 425337.7339 355479.7213 0.58065492 0.897911695 1.18754167 1.02508832 0.965846813 1.087058757 1.136454534 0.962861081 1.196517575 1 18.43940774 -4.372809285 2.996059729 1.066223926 0.554071349 0.769065571 0.081733881 0.133715446 1.907327087 0.020203572 0.140403949 4.24E-05 4.372809285 -0.512152577 IAIPGLAGAGNSVLLVSNLNPER ddPTM_HeLa_A485_30min_R1 1 IAIPGLAGAGNSVLLVSNLNPER 23 0 A6NLN1;P26599;P26599-2;P26599-3;K7EK45;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 115.82 1.26E-06 7845600 3526.1 3813.3 4616.6 3500.8 5999.1 4536.4 5485 5860.9 4088.9 4926.7 FALSE FALSE TRUE 4310.46878 4259.232264 6324.472453 3692.03984 5401.80854 4773.918889 4313.084942 4423.505085 4909.504724 3698.564359 1.165443767 1.151590685 1.70998037 0.998235932 1.46051495 1.290749173 1.166151112 1.196005979 1.327408218 1 11.85274967 -11.07724415 0.320189391 0.688941222 1.295545929 0.160793434 0.186867572 67.47666349 3.172152423 15.51774472 0.169095859 8.37E-12 11.07724415 0.606604707 IAIPGLAGAGNSVLLVSNLNPER ddPTM_HeLa_A486_30min_R1 1 IAIPGLAGAGNSVLLVSNLNPER 23 0 A6NLN1;P26599;P26599-2;P26599-3;K7EK45;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 108.71 3.83E-06 9568100 3278.6 4711.3 3501.3 1492.3 5965.7 4304.2 4219.2 4513.1 4467 4485.3 FALSE FALSE TRUE 3048.787071 4337.95943 4857.097128 3474.149817 5217.426278 3773.191566 3163.511534 3485.56565 4854.203157 3362.151686 0.906796408 1.290233111 1.444639499 1.033311445 1.551811687 1.122255008 0.940918742 1.03670684 1.44377875 1 11.7151691 -6.493571922 24.97318902 1.097435164 1.256131357 0.09222049 0.212941667 1575.338371 1342393.509 0.073993243 0.065140894 3.21E-07 6.493571922 0.158696192 IAIYELLFK ddPTM_HeLa_A485_30min_R1 2 IAIYELLFK 9 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3 P46783 RPS10 40S ribosomal protein S10 0 0 ; ; 167.24 6.41E-06 188256000 297890 306100 266240 322680 414520 347190 486530 493040 287890 454770 FALSE FALSE TRUE 364154.6028 341895.7323 364733.2552 340307.1913 373248.9333 365368.3315 382578.8909 372121.1669 345666.8823 341404.2084 1.066637709 1.001439712 1.068332628 0.99678675 1.093275725 1.070192817 1.12060391 1.089972407 1.01248571 1 18.38112132 -5.776249258 24.99967732 1.072018039 1.0335259 0.10673409 0.040689135 420.585494 709963.1037 0.012175071 0.013866163 1.67E-06 5.776249258 -0.03849214 IAIYELLFK ddPTM_HeLa_A486_30min_R1 2 IAIYELLFK 9 0 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;A0A2R8Y6L3 P46783 RPS10 40S ribosomal protein S10 0 0 ; ; 163.77 9.31E-06 189395000 335010 366230 266059 145444 392600 398360 495670 433860 355530 438420 FALSE FALSE TRUE 311527.529 337208.601 369084.1701 338600.9823 343356.4472 349214.3934 371648.1233 335079.5491 386347.6267 328636.7784 0.947938726 1.026082968 1.123076279 1.030319808 1.044790084 1.062615071 1.130878063 1.019604534 1.175606786 1 18.32613442 -4.403057243 3.391650067 1.073349386 0.947027885 0.34800974 0.052499403 0.273835316 5.174977532 0.01251131 0.070359388 3.95E-05 4.403057243 -0.126321501 IALALTAISLGTARPPPSMSAAGLAAR ddPTM_HeLa_A485_30min_R1 2 IALALTAISLGTARPPPSMSAAGLAAR 27 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 ; ; 176.65 3.11E-28 26746000 13190.7 16628.5 16091 13009.8 19352.2 14304.4 17751.6 20177 10637.6 17770.6 FALSE FALSE TRUE 16124.92571 18573.05843 22043.7305 13720.49243 17425.42702 15053.35627 13958.82564 15228.55911 12772.46875 13340.71646 1.208700129 1.392208468 1.652364816 1.028467434 1.306183747 1.128376898 1.046332532 1.14150984 0.957405008 1 13.70354853 -6.019549394 0.884116231 1.03179171 1.391359139 0.468008783 0.14794897 0.538197399 0.922686442 0.083694914 0.100798606 9.56E-07 6.019549394 0.359567428 IALALTAISLGTARPPPSMSAAGLAAR ddPTM_HeLa_A486_30min_R1 2 IALALTAISLGTARPPPSMSAAGLAAR 27 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 ; ; 143.48 8.27E-17 25325000 7341 9070.3 7135.7 2885.8 11484.2 7428.1 10027.4 9898.4 7319.3 8734.1 FALSE FALSE TRUE 6826.433809 8351.536395 9898.834141 6718.28824 10043.74455 6511.696545 7518.438461 7644.750401 7953.742817 6547.024511 1.042677295 1.275623206 1.51195923 1.026159018 1.534093012 0.994603966 1.148374876 1.167667906 1.214863761 1 12.67662366 -6.303982091 24.9995176 1.118285937 1.276960351 0.208277662 0.167658418 851.699329 500484.5894 0.056944912 0.050221107 4.97E-07 6.303982091 0.158674414 IALEARPLLSQEDS(ph)EEEENELEAINR ddPTM_HeLa_A485_30min_R1 3 IALEARPLLSQEDSEEEENELEAINR 26 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 IALEARPLLSQEDS(1)EEEENELEAINR;IALEARPLLSQEDS(1)EEEENELEAINR;IALEARPLLS(0.027)QEDS(0.973)EEEENELEAINR ;; 317.22 2.33E-106 1022570000 160861 261234 266407 169643 285786 254113 313286 386447 264351 245745 TRUE FALSE FALSE 196643.9745 291783.0439 364962.0354 178910.1675 257332.1424 267417.9637 246349.8868 291670.2673 317403.8209 184485.2941 1.06590596 1.581605977 1.978271695 0.969780103 1.394865339 1.449535395 1.335336174 1.580994674 1.720483047 1 17.49314629 -5.266156781 24.99348595 1.379738184 1.54589567 0.073592502 0.2990927 1265.043643 6702389.564 0.084455971 0.129917876 5.42E-06 5.266156781 0.166157487 IALEARPLLSQEDS(ph)EEEENELEAINR ddPTM_HeLa_A486_30min_R1 3 IALEARPLLSQEDSEEEENELEAINR 26 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 IALEARPLLSQEDS(1)EEEENELEAINR;IALEARPLLSQEDS(1)EEEENELEAINR;IALEARPLLS(0.003)QEDS(0.997)EEEENELEAINR ;; 296.67 2.02E-90 886810000 189852 225045 185610 71409 259091 207376 231868 236945 190914 228101 TRUE FALSE FALSE 176544.3552 207211.6146 257483.1628 166243.7608 226593.3909 181792.0576 173852.174 182997.796 207462.5792 170983.0249 1.032525628 1.211884131 1.50589898 0.972282254 1.325239105 1.063216993 1.016780315 1.070268795 1.213351906 1 17.38349358 -6.294978207 24.10282564 1.073618901 1.212975333 0.177125301 0.14737672 749.3795706 538542.2053 0.051329451 0.045271756 5.07E-07 6.294978207 0.139356433 IALEARPLLSQEDS(ph)EEEENELEAINRK ddPTM_HeLa_A485_30min_R1 5 IALEARPLLSQEDSEEEENELEAINRK 27 2 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 IALEARPLLSQEDS(1)EEEENELEAINRK;IALEARPLLSQEDS(1)EEEENELEAINRK;IALEARPLLSQEDS(1)EEEENELEAINRK;IALEARPLLSQEDS(1)EEEENELEAINRK;IALEARPLLSQEDS(1)EEEENELEAINRK ;;;; 264.41 1.24E-63 1309028000 387944 503957 360735 399660 627305 610009 794993 1133840 483438 570236 TRUE FALSE FALSE 474240.8044 562890.3873 494185.8879 421492.4138 564848.3116 641948.128 625136.2511 855763.9622 580459.5722 428086.6596 1.107814957 1.314898221 1.154406186 0.984596003 1.319471885 1.499575176 1.460303041 1.999043752 1.355939409 1 18.70754335 -6.105531689 3.156781921 1.526779994 1.15312077 0.25792146 0.243908986 0.303247486 5.749983204 0.082626914 0.084227871 7.84E-07 6.105531689 -0.373659224 IALEARPLLSQEDS(ph)EEEENELEAINRK ddPTM_HeLa_A486_30min_R1 2 IALEARPLLSQEDSEEEENELEAINRK 27 2 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 IALEARPLLS(0.006)QEDS(0.994)EEEENELEAINRK;IALEARPLLS(0.018)QEDS(0.982)EEEENELEAINRK ; 89.751 0.0025717 166284000 47965 38672 36125 20431.7 50076 32236 55877 49566 34046 60068 TRUE FALSE FALSE 44602.90119 35607.48988 50113.56746 47566.03016 43795.00114 28259.05007 41895.98359 38280.90382 36997.13469 45026.58182 0.990590433 0.790810415 1.112977389 1.05639887 0.972647698 0.627608158 0.930472221 0.850184541 0.82167318 1 15.45848934 -6.039525904 24.98911754 0.837262585 0.986572987 0.256610031 0.117783419 715.3900932 452283.1832 0.0386253 0.038631546 9.13E-07 6.039525904 0.149310402 IALESEGRPEEQMES(ph)DNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A485_30min_R1 3 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 IALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;IALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;IALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK ;; 190.89 8.30E-21 959090000 342767 407801 459836 229974 783390 299439 468580 454590 517407 465320 TRUE FALSE FALSE 419014.3366 455489.7796 629948.4718 242536.8973 705392.941 315117.163 368464.0551 343101.0897 621245.839 349324.2876 1.199499581 1.303916721 1.803334306 0.69430299 2.019306891 0.902076306 1.054790829 0.982185041 1.778421544 1 18.41420743 IALESEGRPEEQMES(ph)DNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A486_30min_R1 3 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 IALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;IALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;IALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK ;; 232.19 2.62E-39 1633360000 644490 1093060 963110 86941 1312260 834870 956690 947350 933130 299849 TRUE FALSE FALSE 599314.5791 1006441.945 1336051.985 202403.0418 1147664.114 731872.2277 717316.0432 731659.0855 1014014.46 224764.8587 2.66640694 4.477754888 5.944220963 0.900510173 5.106065606 3.256168388 3.191406554 3.255220098 4.511445719 1 17.77805697 -10.67639267 2.765825082 0.655236828 3.707616025 0.269061233 1.335523044 11986169.77 10023403.24 28862161.82 0.342013264 2.11E-11 10.67639267 3.052379197 IALESEGRPEEQMES(ph)DNCSGGDDDWTHLSSK ddPTM_HeLa_A485_30min_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMES(0.997)DNCS(0.003)GGDDDWTHLSSK 245.6 7.53E-51 3203600000 114500 118470 135060 101670 251260 110330 129510 169740 153720 154830 TRUE FALSE FALSE 139970.13 132324.0359 185024.3143 107223.9747 226243.6722 116106.7082 101839.1305 128110.9989 184570.194 116233.7304 1.204212662 1.138430604 1.591829787 0.922485876 1.946454539 0.998907183 0.876158152 1.102184352 1.587922828 1 16.82666927 IALESEGRPEEQMES(ph)DNCSGGDDDWTHLSSK ddPTM_HeLa_A486_30min_R1 3 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMES(0.999)DNCS(0.001)GGDDDWTHLSSK;IALES(0.001)EGRPEEQMES(0.93)DNCS(0.069)GGDDDWTHLSSK;IALESEGRPEEQMES(0.999)DNCSGGDDDWTHLSSK ;; 246.7 6.33E-51 3541690000 185135 243868 204409 51776 313121 213963 247530 239503 235590 139807 TRUE FALSE FALSE 172157.9925 224543.0115 283561.6391 120537.1446 273846.4444 187566.4205 185595.3759 184973.3952 256011.1309 104798.4172 1.642753747 2.142618348 2.705781696 1.150180965 2.613078057 1.789782952 1.77097499 1.76503997 2.442891197 1 16.6772574 -10.46721068 2.920648985 0.972230776 2.000198907 0.301855365 0.457399551 37280942.68 43274764.7 8444144.712 0.10639991 3.41E-11 10.46721068 1.02796813 IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A485_30min_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK 278.68 8.88E-78 1071500000 286830 347210 403860 150520 608080 251900 351600 360670 369780 375590 TRUE FALSE FALSE 350634.3439 387813.1892 553264.62 158742.5265 547537.4201 265089.0945 276477.7877 272215.117 443991.4542 281962.3252 1.243550335 1.375407828 1.962193423 0.562991975 1.94188149 0.940157854 0.980548687 0.965430813 1.574648151 1 18.10514288 IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A486_30min_R1 6 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMES(0.004)DNCS(0.996)GGDDDWTHLSSK;IALESEGRPEEQMES(0.001)DNCS(0.999)GGDDDWTHLSSK;IALESEGRPEEQMESDNCS(0.999)GGDDDWT(0.001)HLSSK;IALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK;IALESEGRPEEQMES(0.033)DNCS(0.967)GGDDDWTHLSSK;IALESEGRPEEQMES(0.093)DNCS(0.907)GGDDDWTHLSSK ;;;;; 211.6 8.43E-30 8239990000 461111 741445 786594 82643.1 928372 495819 533405 559815 647637 252673 TRUE FALSE FALSE 428789.5001 682690.1979 1091184.263 192397.3134 811926.927 434649.8929 399941.4272 432357.3452 703774.6966 189402.0362 2.263911776 3.604450151 5.761206609 1.015814387 4.28679091 2.294853327 2.111600463 2.282749193 3.715771545 1 17.53109232 -6.05590964 1.073822692 2.337534279 3.560256863 0.12283737 1.329830791 1.125938084 2.75784006 0.651126564 0.719648742 8.79E-07 6.05590964 1.222722584 IALESEGRPEEQMESDNCSGGDDDWT(ph)HLSSK ddPTM_HeLa_A485_30min_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMESDNCSGGDDDWT(0.785)HLS(0.185)S(0.03)K 184.78 7.14E-21 439730000 74003 58058 51528 91309 86478 58879 91989 86305 75935 137570 TRUE FALSE FALSE 90464.71204 64847.37806 70590.35146 96296.97946 77867.94668 61961.8134 72334.79867 65138.56343 91174.45798 103276.3308 0.875948161 0.627901646 0.683509483 0.932420611 0.753976696 0.599961413 0.700400548 0.630721124 0.882820461 1 16.65615012 -7.972620364 5.265852248 0.999469714 0.724434087 0.440278286 0.101567141 0.141029128 10.58688927 0.100397209 0.026139548 1.07E-08 7.972620364 -0.275035627 IALESEGRPEEQMESDNCSGGDDDWTHLS(ph)SK ddPTM_HeLa_A485_30min_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMESDNCSGGDDDWT(0.001)HLS(0.819)S(0.181)K 121.75 7.15E-06 392190000 30477 26869 29019 43887 39066 31714 43340 40832 31864 60713 TRUE FALSE FALSE 37256.50351 30011.09582 39754.33568 46284.43568 35176.45187 33374.496 34080.05494 30817.88798 38258.81253 45578.36644 0.817416384 0.658450448 0.872219406 1.015491324 0.771779566 0.732244234 0.747724362 0.676151657 0.839407278 1 15.4760616 IALESEGRPEEQMESDNCSGGDDDWTHLS(ph)SK ddPTM_HeLa_A486_30min_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMESDNCSGGDDDWTHLS(0.887)S(0.113)K 274.99 1.19E-77 560740000 39320 67025 35254 17780 67271 76151 60595 81098 61159 73691 TRUE FALSE FALSE 36563.87105 61713.6949 48905.29293 41392.73855 58833.2439 66756.26387 45433.49009 62633.75576 66460.31136 55238.29395 0.661929767 1.117226664 0.885351256 0.749348606 1.065080756 1.208514222 0.822499879 1.133882879 1.203156481 1 15.75338114 -5.83255326 10.26531696 1.073609075 0.874716247 0.332320056 0.150686627 0.534048389 73.53872394 0.046489277 0.052760043 1.47E-06 5.83255326 -0.198892828 IALLEEENSRPHTNET(ph)SL ddPTM_HeLa_A485_30min_R1 2 IALLEEENSRPHTNETSL 18 1 D6REY2;P23508;P23508-2 D6REY2 MCC Colorectal mutant cancer protein 1 0 IALLEEENSRPHTNET(0.881)S(0.119)L;IALLEEENSRPHTNET(0.5)S(0.5)L ; 140.2 1.17E-06 336240000 259520 316050 319530 260480 390030 311100 372670 462480 338080 377440 TRUE FALSE FALSE 317249.3287 353009.2982 437737.4438 274709.3628 351197.2437 327388.7149 293046.0101 349056.0549 405929.5549 283351.1543 1.119633091 1.24583681 1.544858516 0.969501478 1.239441726 1.155416909 1.034214986 1.231885064 1.43260244 1 18.11223155 -5.276567667 24.99929248 1.160422788 1.297682246 0.155322091 0.16095282 1656.798547 2737833.185 0.045596001 0.067933403 5.29E-06 5.276567667 0.137259458 IALLEEENSRPHTNET(ph)SL ddPTM_HeLa_A486_30min_R1 4 IALLEEENSRPHTNETSL 18 1 D6REY2;P23508;P23508-2 D6REY2 MCC Colorectal mutant cancer protein 1 0 IALLEEENSRPHTNET(0.976)S(0.024)L;IALLEEENSRPHTNET(0.906)S(0.094)L;IALLEEENSRPHTNET(0.749)S(0.251)L;IALLEEENSRPHT(0.001)NET(0.499)S(0.499)L ;;; 141.97 7.17E-08 704730000 668700 796100 703600 252164 918940 721990 801640 825780 665320 769040 TRUE FALSE FALSE 621827.5832 733014.1367 976052.7631 587050.5357 803677.9764 632918.2145 601061.1931 637767.9207 722990.4733 576467.3784 1.078686508 1.271562215 1.69316218 1.01835864 1.394143028 1.097925465 1.042662977 1.106338267 1.254174131 1 19.13687944 -6.280686833 23.11971809 1.103268929 1.297267811 0.216290803 0.181519688 505.8754974 607645.8854 0.063679599 0.056276109 5.24E-07 6.280686833 0.193998882 IALLEEENSRPHTNETS(ph)L ddPTM_HeLa_A485_30min_R1 1 IALLEEENSRPHTNETSL 18 1 D6REY2;P23508;P23508-2 D6REY2 MCC Colorectal mutant cancer protein 1 0 IALLEEENSRPHTNET(0.167)S(0.833)L 124.35 6.33E-06 190070000 136890 197920 186420 157010 212080 187130 228130 239150 192100 207760 TRUE FALSE FALSE 167340.7082 221065.0223 255384.5156 165587.0587 190964.5705 196927.8374 179388.1618 180498.0875 230652.708 155969.2555 1.072908296 1.41736281 1.637402927 1.061664737 1.224373162 1.262606767 1.150150786 1.157267097 1.478834448 1 17.25090215 -5.289096242 24.96499919 1.19996205 1.380038676 0.188293232 0.175403439 1190.957917 1075038.55 0.048936109 0.072601743 5.14E-06 5.289096242 0.180076626 IALNLEGCALS(ph)QGSLR ddPTM_HeLa_A485_30min_R1 1 IALNLEGCALSQGSLR 16 0 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 IALNLEGCALS(0.5)QGS(0.5)LR 104.45 0.00017735 0 8444.1 8966.1 9961 7399.9 15438 12337 11924 11187 9213.2 13123 TRUE FALSE FALSE 10322.46091 10014.6074 13645.98841 7804.137799 13900.93851 12982.94624 9376.33999 8443.370709 11062.20473 9851.677611 1.04778712 1.016538279 1.385143622 0.792163336 1.411022474 1.317841159 0.951750591 0.857049027 1.122875227 1 13.2661537 -6.794076868 24.99138888 0.971005955 1.159834415 0.181116167 0.185568897 333.5082528 255373.1824 0.077220733 0.052066356 1.61E-07 6.794076868 0.18882846 IANS(ph)MVST(ph)WT(ph)GPPAMK ddPTM_HeLa_A485_30min_R1 1 IANSMVSTWTGPPAMK 16 0 Q6P1X5 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 3 0 IANS(1)MVS(0.016)T(0.993)WT(0.991)GPPAMK 52.19 0.015589 1888200000 181420 525610 536930 87539 540930 294760 305760 490010 672230 142360 TRUE FALSE FALSE 221776.2531 587075.5173 735562.7505 92321.03391 487073.1099 310193.1778 240431.8782 369834.2792 807140.3949 106872.2719 2.075152414 5.493244474 6.882634168 0.86384459 4.557525549 2.902466394 2.249712426 3.460526032 7.55238361 1 16.70552807 -5.25060641 24.94543214 3.330400189 4.884633354 0.105096485 2.10877194 1732.331519 3989088.35 0.566272624 0.9685277 5.62E-06 5.25060641 1.554233165 IANS(ph)MVST(ph)WT(ph)GPPAMK ddPTM_HeLa_A486_30min_R1 2 IANSMVSTWTGPPAMK 16 0 Q6P1X5 Q6P1X5 TAF2 Transcription initiation factor TFIID subunit 2 3 0 IANS(1)MVS(0.066)T(0.97)WT(0.964)GPPAMK;IANS(1)MVS(0.006)T(0.997)WT(0.997)GPPAMK ; 56.9 0.01184 2657400000 306547 391510 612840 49280.8 645030 333004 217286 358840 540270 129056 TRUE FALSE FALSE 285059.6383 360485.3217 850148.0604 114728.1929 564124.3227 291921.3522 162918.7446 277139.9654 587101.0386 96739.53759 2.9466715 3.72634944 8.78801038 1.185949362 5.831372951 3.017601278 1.684096789 2.864805563 6.06888407 1 16.56181802 -6.383354564 10.55495932 2.959573153 4.506870393 0.110885761 2.220324447 1.077300533 88.41151429 0.77044172 0.679157852 4.14E-07 6.383354564 1.54729724 IAPAVVHIELFR ddPTM_HeLa_A486_30min_R1 2 IAPAVVHIELFR 12 0 A0A3B3IU24;Q92743 A0A3B3IU24 HTRA1 Serine protease HTRA1 0 0 ; ; 69.451 0.027896 29183000 87772 70339 57677 43565 83382 51812 57781 46902 33454 36532 FALSE FALSE TRUE 81619.63606 64765.08147 80011.07904 101421.5217 72923.45205 45419.96223 43323.58265 36223.43846 36353.81966 27384.14942 2.980543044 2.365057263 2.921802603 3.703657912 2.662980359 1.658622349 1.58206786 1.322788519 1.327549711 1 14.74105345 -6.286632189 2.787408434 1.358247637 2.967577225 0.847646729 0.332483954 0.113792821 1.766018402 0.134764505 0.122918962 5.17E-07 6.286632189 1.609329587 up IAQNLSIFLSSFR ddPTM_HeLa_A485_30min_R1 1 IAQNLSIFLSSFR 13 0 Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4;Q9NSV4-1;Q9NSV4-2 Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 0 0 190.66 4.59E-10 8455900 3403.4 3745.6 3774.8 4062 5312.4 3408.9 4009.4 3857.9 2963.8 5840.4 FALSE FALSE TRUE 4160.474588 4183.615338 5171.255603 4283.896774 4783.478803 3587.384733 3152.758936 2911.743976 3558.607474 4384.495765 0.948906057 0.954183916 1.17944135 0.977055745 1.090998614 0.818197787 0.719069901 0.664100077 0.811634374 1 12.09819522 -6.361120334 4.881740165 0.771051168 1.030777369 0.533661829 0.104916752 0.161423614 6.162922768 0.036924483 0.032400808 4.35E-07 6.361120334 0.259726201 IAQNLSIFLSSFR ddPTM_HeLa_A486_30min_R1 2 IAQNLSIFLSSFR 13 0 Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4;Q9NSV4-1;Q9NSV4-2 Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 0 0 ; ; 126.12 0.00064264 10045700 7227.8 7307.3 6282.3 3100.2 8650.8 6994.6 8983 7987.6 6278.5 8569.9 FALSE FALSE TRUE 6721.168544 6728.242935 8714.974806 7217.422275 7565.735998 6131.677368 6735.358388 6168.997848 6822.725435 6423.941259 1.04626868 1.047369934 1.356639865 1.123519345 1.177740532 0.95450396 1.04847758 0.960313552 1.062077805 1 12.64924299 -6.254920043 24.94738513 1.005306863 1.154563573 0.411529618 0.08676068 530.8252227 2031298.447 0.029734528 0.029056389 5.56E-07 6.254920043 0.14925671 IAQPSMTAS(ph)PQTEEFFDLIASSQSR ddPTM_HeLa_A485_30min_R1 1 IAQPSMTASPQTEEFFDLIASSQSR 25 0 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5;Q86YR5-2 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 IAQPS(0.088)MT(0.389)AS(0.495)PQT(0.028)EEFFDLIASSQSR 88.293 0.0027262 13629000 7087.7 7466.6 8709.1 7996.2 9468.5 8378 8183.1 7942.5 6827.1 7246.4 TRUE FALSE FALSE 8664.334413 8339.753919 11930.95851 8433.012159 8525.782894 8816.659125 6434.713835 5994.589422 8197.236348 5440.00584 1.592706822 1.533041354 2.193188547 1.550184394 1.56723782 1.620707658 1.182850538 1.101945402 1.506843299 1 12.40939248 -6.708983176 4.341094506 1.203868437 1.689464812 0.540820163 0.216268005 0.17268544 6.726269254 0.089102978 0.06571909 1.95E-07 6.708983176 0.485596375 IAQVS(ph)PGPR ddPTM_HeLa_A485_30min_R1 6 IAQVSPGPR 9 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR ;;;;; 147.72 8.58E-05 9547340000 2975650 3823550 3682990 3020480 4462480 3769220 4478170 4912550 3443750 4176510 TRUE FALSE FALSE 3637573.077 4270680.912 5045481.263 3185481.174 4018179.822 3966570.531 3521372.396 3707739.41 4134879.037 3135382.92 1.160168684 1.362092293 1.609207357 1.015978353 1.281559518 1.265099234 1.123107603 1.182547556 1.318779601 1 21.58021022 -14 0.100011965 0.17465781 1.434873777 0.216444702 0.150805188 285.8255698 1.94148109 49.19488305 2.591277698 1.00E-14 14 1.260215967 IAQVS(ph)PGPR ddPTM_HeLa_A486_30min_R1 5 IAQVSPGPR 9 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR ;;;; 152.96 5.51E-05 7646760000 2640320 3101640 2643380 884054 3360660 2547300 3067140 3027180 2677770 2878520 TRUE FALSE FALSE 2455247.203 2855854.75 3666967.528 2058122.39 2939134.686 2233040.025 2299709.131 2337957.197 2909881.26 2157719.856 1.137889701 1.323552148 1.699464144 0.953841336 1.362148417 1.034907298 1.065805241 1.083531391 1.348590852 1 21.04107614 -5.284005635 24.99258482 1.128869428 1.380627129 0.310126476 0.181283321 967.2547955 1071252.268 0.050355043 0.074748307 5.20E-06 5.284005635 0.2517577 IAQVS(ph)PGPRDS(ph)PAFPDS(ph)PWR ddPTM_HeLa_A485_30min_R1 1 IAQVSPGPRDSPAFPDSPWR 20 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 3 0 IAQVS(1)PGPRDS(1)PAFPDS(1)PWR 79.395 0.0047782 26169000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 IAQVS(ph)PGPRDS(ph)PAFPDS(ph)PWR ddPTM_HeLa_A486_30min_R1 2 IAQVSPGPRDSPAFPDSPWR 20 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 3 0 IAQVS(1)PGPRDS(1)PAFPDS(1)PWR;IAQVS(1)PGPRDS(1)PAFPDS(1)PWR ; 134.66 5.44E-07 152688000 224970 268010 232550 96299 261880 238970 261840 247760 228050 245380 TRUE FALSE FALSE 209200.7647 246771.9115 322599.5879 224188.9387 229032.5685 209488.3111 196324.8625 191350.4566 247817.5576 183935.2508 1.137360913 1.341623807 1.753875815 1.218847054 1.245180396 1.138924214 1.067358549 1.040314218 1.347308667 1 17.48883847 -5.671072003 2.660598215 1.131070368 1.408682883 0.318198095 0.171864009 0.324453768 4.662705679 0.055740315 0.07428222 2.13E-06 5.671072003 0.277612515 IAQVSPGPRDS(ph)PAFPDSPWR ddPTM_HeLa_A486_30min_R1 1 IAQVSPGPRDSPAFPDSPWR 20 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 IAQVS(0.119)PGPRDS(0.881)PAFPDSPWR 74.456 0.0018415 207870000 106350 97573 66527 76416 108610 127320 185060 157120 92938 181470 TRUE FALSE FALSE 98895.41419 89840.96013 92288.03605 177900.3099 94987.12105 111612.5529 138756.0306 121347.2059 100993.9407 136028.7308 0.727018576 0.66045577 0.678445175 1.30781423 0.698287196 0.820507199 1.020049439 0.892070412 0.742445659 1 17.05355187 IAS(ph)DEEIQGTK ddPTM_HeLa_A485_30min_R1 6 IASDEEIQGTK 11 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK ;;;;; 286.53 2.18E-35 13495000000 9115880 6107670 3871320 12167920 7402280 5901570 10643700 6950000 4900720 14162900 TRUE FALSE FALSE 11143676.06 6821908.877 5303482.367 12832622.66 6665283.012 6210567.08 8369586.544 5245501.603 5884249.552 10632349.68 1.048091569 0.641618183 0.49880624 1.206941367 0.626887115 0.584119905 0.787181272 0.493352999 0.553428897 1 23.34195712 IAS(ph)DEEIQGTK ddPTM_HeLa_A486_30min_R1 6 IASDEEIQGTK 11 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(0.999)DEEIQGT(0.001)K;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK ;;;;; 245.72 4.71E-22 15083300000 11427800 10043600 4572840 4953330 8448510 11095200 14369000 12739900 7531780 15647600 TRUE FALSE FALSE 10626770.23 9247708.558 6343566.113 11531602.57 7388819.097 9726387.032 10773724.22 9839302.88 8184640.755 11729339.11 0.905999062 0.788425372 0.540828946 0.983141715 0.629943343 0.829235726 0.918527815 0.838862513 0.69779215 1 23.48361839 -6.506015493 24.49352821 0.853726692 0.765829523 0.094580866 0.136603282 1499.539715 2178057.411 0.04754622 0.04089467 3.12E-07 6.506015493 -0.08789717 IAS(ph)DEEIQGTKDAVIQDLER ddPTM_HeLa_A485_30min_R1 5 IASDEEIQGTKDAVIQDLER 20 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(1)DEEIQGTKDAVIQDLER;IAS(1)DEEIQGTKDAVIQDLER;IAS(0.999)DEEIQGT(0.001)KDAVIQDLER;IAS(1)DEEIQGTKDAVIQDLER;IAS(1)DEEIQGTKDAVIQDLER ;;;; 224.83 7.99E-36 4030360000 531665 734752 406060 459648 874105 887920 1436892 1674133 457422 666262 TRUE FALSE FALSE 649932.045 820674.8549 556278.4916 484757.4063 787076.037 934410.1182 1129888.286 1263549.257 549222.3997 500175.145 1.29940892 1.640774963 1.112167402 0.96917532 1.573600857 1.868165836 2.258985272 2.526213606 1.09806016 1 18.93207384 -6.036622633 4.080233716 1.87092229 1.270140237 0.175220655 0.468561736 0.309947419 11.25991586 0.155491494 0.163057207 9.19E-07 6.036622633 -0.600782053 IAS(ph)DEEIQGTKDAVIQDLER ddPTM_HeLa_A486_30min_R1 4 IASDEEIQGTKDAVIQDLER 20 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(1)DEEIQGTKDAVIQDLER;IAS(1)DEEIQGTKDAVIQDLER;IAS(1)DEEIQGTKDAVIQDLER;IAS(1)DEEIQGTKDAVIQDLER ;;; 179.58 3.59E-19 1855150000 542120 358108 253674 266278 587770 369304 640960 659160 243904 681620 TRUE FALSE FALSE 504120.1875 329730.2179 351903.3664 619908.6409 514046.4059 323743.0273 480585.0286 509083.6574 265045.7951 510937.9154 0.986656446 0.645343021 0.688739974 1.213275864 1.006083891 0.633624982 0.940593787 0.996370874 0.518743642 1 18.96278847 -4.330125617 0.006781212 1.696974682 1.83E-06 0.003374269 0.211750565 187113.2504 202.3504933 24114.7456 26563.19755 4.68E-05 4.330125617 -1.696972854 IAS(ph)DEEIQGTKDAVIQDLERK ddPTM_HeLa_A485_30min_R1 1 IASDEEIQGTKDAVIQDLERK 21 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(1)DEEIQGTKDAVIQDLERK 104.33 5.80E-05 15758000 8899.7 11345 4172.7 5815.1 15110 22276 37726 74649 10119 10187 TRUE FALSE FALSE 10879.40756 12671.69906 5716.355371 6132.764188 13605.59535 23442.33691 29665.53191 56341.2157 12149.79048 7647.568378 1.422596965 1.656957929 0.747473587 0.80192342 1.779074691 3.06533211 3.879080309 7.367206532 1.588712893 1 12.90078539 -6.323656738 2.317706907 3.954187258 1.177143416 0.279020927 1.63442221 0.329235055 3.472602175 0.629273306 0.557146413 4.75E-07 6.323656738 -2.777043842 IAS(ph)HDFDPTGLVQR ddPTM_HeLa_A485_30min_R1 1 IASHDFDPTGLVQR 14 0 Q9NZN5-2 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 IAS(1)HDFDPTGLVQR 64.275 0.014213 127580000 76494 94296 73636 105660 106760 89906 131890 131190 90214 160960 TRUE FALSE FALSE 93509.8264 105323.0969 100877.0206 111431.9383 96130.59954 94613.33914 103710.6241 99015.4468 108319.1223 120835.6342 0.773859689 0.871622825 0.834828412 0.922177791 0.795548434 0.782992035 0.858278476 0.819422577 0.896417046 1 16.88268644 -8.066810631 3.167189723 0.999879144 0.834871 0.599616902 0.042216731 0.213664889 5.201627297 0.040645107 0.0108199 8.57E-09 8.066810631 -0.165008143 IAS(ph)HDFDPTGLVQR ddPTM_HeLa_A486_30min_R1 2 IASHDFDPTGLVQR 14 0 Q9NZN5-2 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 IAS(1)HDFDPTGLVQR;IAS(1)HDFDPTGLVQR ; 106.82 0.00015529 228050000 308280 303500 193464 96737 285550 296140 332120 385670 222905 372540 TRUE FALSE FALSE 286671.164 279449.5547 268378.4419 225208.6248 249733.6564 259605.2577 249020.0632 297861.3601 242226.5849 279253.5592 1.026562257 1.000701855 0.961056478 0.806466444 0.894289967 0.929639925 0.891734608 1.066634069 0.867407333 1 18.09121614 -9.860955639 13.97656562 0.999997059 0.937767163 0.05838507 0.074337148 0 0 0.074353362 0.018033339 1.38E-10 9.860955639 -0.062229896 IAS(ph)PVSR ddPTM_HeLa_A485_30min_R1 3 IASPVSR 7 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 IAS(1)PVSR;IAS(0.998)PVS(0.002)R;IAS(1)PVSR ;; 174.92 0.00063647 4460070000 1750380 2110100 1822720 2182630 2718880 2085350 2378920 2671790 1850680 2505770 TRUE FALSE FALSE 2139745.992 2356857.84 2497019.978 2301861.55 2448178.761 2194535.701 1870644.308 2016529.313 2222094.501 1881127.654 1.137480483 1.25289628 1.327405916 1.22366047 1.301442119 1.166606475 0.994427095 1.071978985 1.181256623 1 20.84316632 -6.532811783 5.580652894 1.068387301 1.250685962 0.631602701 0.067082121 0.111393647 11.74755294 0.025556914 0.020440448 2.93E-07 6.532811783 0.182298661 IAS(ph)PVSR ddPTM_HeLa_A486_30min_R1 5 IASPVSR 7 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 IAS(1)PVSR;IAS(0.99)PVS(0.01)R;IAS(0.994)PVS(0.006)R;IAS(1)PVSR;IAS(0.998)PVS(0.002)R ;;;; 161.27 0.00011492 6749860000 2447999 2536247 1993095 875219 2779928 2308324 2651990 2700022 2003394 2491154 TRUE FALSE FALSE 2276406.912 2335265.551 2764874.761 2037554.063 2431243.508 2023546.454 1988434.052 2085285.932 2177049.805 1867352.824 1.219055597 1.250575425 1.480638648 1.091145732 1.301973295 1.083644413 1.064841109 1.11670698 1.165848134 1 20.83256311 -6.067688052 1.362948862 1.088945409 1.290125559 0.431746324 0.100784385 0.415127814 1.580632818 0.043073311 0.04576476 8.56E-07 6.067688052 0.201180149 IASEASFSSSEGS(ph)PLSR ddPTM_HeLa_A485_30min_R1 1 IASEASFSSSEGSPLSR 17 0 A0A087WX12;A0A087X032;A0A087WTH3;A0A087X251;A0A087X0T6;Q2M2Z5-5;Q2M2Z5-2;Q2M2Z5-3;Q2M2Z5-4;Q2M2Z5 A0A087WX12 KIZ Centrosomal protein kizuna 1 0 IASEASFSSS(0.005)EGS(0.995)PLSR 147.64 4.09E-09 0 68966 83653 76276 35697 76425 79526 70249 98836 73622 42712 TRUE FALSE FALSE 84307.24877 93435.49067 104493.6665 37647.03672 68815.85866 83689.85839 55239.72727 74596.31603 88397.2601 32064.68446 2.629286712 2.913968818 3.258839695 1.174096591 2.146157364 2.610032184 1.72275911 2.326432251 2.756841728 1 14.96869759 -5.236895481 24.99926886 2.042264 2.932025488 0.387345226 0.553662792 871.6547593 887825.7887 0.147200663 0.254808901 5.80E-06 5.236895481 0.889761489 IASLEVENQSLR ddPTM_HeLa_A485_30min_R1 2 IASLEVENQSLR 12 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7;E9PN91 P29692-2 EEF1D Elongation factor 1-delta 0 0 ; ; 214.82 2.76E-20 91095000 26636 27821 36761 36571 52832 31226 40431 38025 38410 51386 FALSE FALSE TRUE 32561.08631 31074.42394 50360.42365 38568.78113 47571.86058 32860.94508 31792.58656 28699.30913 46118.53468 38576.41589 0.844067173 0.805529058 1.305471815 0.999802087 1.233185082 0.851840284 0.824145681 0.743959968 1.195511133 1 15.23543149 IATGS(ph)FLK ddPTM_HeLa_A485_30min_R1 1 IATGSFLK 8 0 P22234;P22234-2;E9PBS1;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 IATGS(1)FLK 128.03 0.0005785 87574000 153670 162500 138260 199850 204800 161560 203330 244110 148380 261850 TRUE FALSE FALSE 187853.3613 181502.9614 189408.1275 210767.2995 184409.3929 170019.0318 159886.8844 184241.6398 178158.505 196575.614 0.95562902 0.923323894 0.963538272 1.072194537 0.938109205 0.864903984 0.813360728 0.937255827 0.906310307 1 17.58472484 -6.001328059 24.99892282 0.895506787 0.977576442 0.264364346 0.057478447 65.09055359 1225280.407 0.018455884 0.020648857 9.97E-07 6.001328059 0.082069655 IATGS(ph)FLK ddPTM_HeLa_A486_30min_R1 2 IATGSFLK 8 0 P22234;P22234-2;E9PBS1;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 IATGS(1)FLK;IATGS(1)FLK ; 166.66 3.06E-05 214402000 554410 625880 353980 302880 609780 621350 740760 761940 446850 676390 TRUE FALSE FALSE 515548.722 576282.9894 491050.5359 705119.9467 533295.7064 544694.1544 555414.013 588462.895 485583.3178 507017.5414 1.016826204 1.136613514 0.968507982 1.390721009 1.051828907 1.074310275 1.095453249 1.160636165 0.957724887 1 18.95167614 -7.768264965 24.99769389 0.97886237 1.11340423 0.195305588 0.107950019 276.1754658 1011406.112 0.09309155 0.026185687 1.71E-08 7.768264965 0.13454186 IATGS(ph)FLKR ddPTM_HeLa_A486_30min_R1 1 IATGSFLKR 9 1 P22234;P22234-2;E9PBS1;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 IAT(0.003)GS(0.997)FLKR 87.184 0.0023633 196970000 200630 215700 153790 91667 241680 239560 274510 272990 163430 235590 TRUE FALSE FALSE 186566.8731 198607.1464 213341.6066 213405.4086 211366.2408 210005.5229 205824.6945 210836.1363 177596.244 176596.7306 1.056457118 1.124636599 1.208072233 1.208433519 1.196886489 1.189181262 1.165506824 1.193884709 1.005659864 1 17.43009911 -7.766860684 24.99706968 1.002829794 1.170729777 0.689462114 0.044275203 82.25394529 379244.215 0.041360555 0.011919642 1.71E-08 7.766860684 0.167899983 IATLISSFLK ddPTM_HeLa_A486_30min_R1 2 IATLISSFLK 10 0 A0A494C0G1;H0Y987;O95394;O95394-3;O95394-4;A0A087WT27;A0A494C1Q4;J3KN95;A0A494C1E2 A0A494C0G1 PGM3 Phosphoacetylglucosamine mutase 0 0 ; ; 185.6 4.32E-09 4402100 12509.4 21465 16623.2 7427.9 21616 26773 29938 22523 16782.1 18690.3 FALSE FALSE TRUE 11632.55566 19764.03523 23060.14822 17292.52659 18904.71972 23470.01947 22447.19575 17395.00457 18236.78594 14010.12723 0.830296219 1.410696342 1.645962799 1.23428762 1.349361031 1.675218154 1.602212127 1.241602185 1.301685962 1 13.77418244 -8.137416482 1.61554397 1.00414023 1.400006419 0.183791875 0.234958825 0.96704055 5.166147289 0.229061522 0.066096406 7.29E-09 8.137416482 0.395866189 IATTTASAATAAAIGAT(ph)PR ddPTM_HeLa_A485_30min_R1 1 IATTTASAATAAAIGATPR 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 IATTTASAATAAAIGAT(1)PR 328.29 3.52E-105 0 28763 30273 27678 35499 41333 27733 37171 41134 26541 45296 TRUE FALSE FALSE 35161.23012 33813.16401 37917.24398 37438.22048 37217.74139 29185.057 29229.11219 31045.822 31867.53525 34004.54081 1.034015731 0.994372022 1.115064138 1.100977093 1.09449328 0.858269405 0.859564973 0.912990479 0.937155288 1 15.05343979 -6.257122886 24.99838294 0.904780991 1.068176674 0.702786438 0.049970927 207.6319489 1202473.506 0.01758688 0.017010483 5.53E-07 6.257122886 0.163395683 IATTTASAATAAAIGAT(ph)PR ddPTM_HeLa_A486_30min_R1 2 IATTTASAATAAAIGATPR 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 IATTTASAATAAAIGAT(1)PR;IATTTASAATAAAIGAT(1)PR ; 276.68 5.33E-72 200350000 148629 177439 132582 60944 193885 180246 194771 204547 138851 176581 TRUE FALSE FALSE 138210.8746 163378.0874 183921.3011 141880.7119 169566.1354 158009.0811 146037.2357 157976.1133 150886.7165 132363.9683 1.044172946 1.234309379 1.38951184 1.071898295 1.281059624 1.193746933 1.103300525 1.193497864 1.139937994 1 17.01415092 -8.673212785 0.475672982 0.984830569 1.209851176 0.263218141 0.096061387 3.49222617 1.287548994 0.209134964 0.05344992 2.12E-09 8.673212785 0.225020608 IAVAAQNCYK ddPTM_HeLa_A485_30min_R1 2 IAVAAQNCYK 10 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 236.03 1.58E-26 211870000 325550 327880 291160 352120 434140 387040 515650 535440 327660 500400 FALSE FALSE TRUE 397967.4744 366222.7138 398872.2002 371355.424 390915.4972 407304.8159 405477.165 404122.5005 393418.3565 375659.4892 1.059383526 0.974879444 1.061791893 0.988542642 1.040611268 1.084239391 1.079374212 1.075768115 1.047273842 1 18.51906602 -6.001674263 24.96218687 1.063331095 1.019976107 0.192303608 0.03382478 83.56213554 1245898.431 0.009850928 0.011012703 9.96E-07 6.001674263 -0.043354988 IAVAAQNCYK ddPTM_HeLa_A486_30min_R1 2 IAVAAQNCYK 10 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 236.03 1.58E-26 121842000 120804 153474 110775 56073 170731 167349 168906 179032 128982 184047 FALSE FALSE TRUE 112336.2634 141312.1613 153670.0467 130540.7778 149316.326 146703.1819 126643.9323 138270.3218 140162.2636 137960.4333 0.814264357 1.02429485 1.113870427 0.946218961 1.082312678 1.06337142 0.917972851 1.002246213 1.015959868 1 17.07389504 -4.260599686 24.04878898 1.019522954 0.814264246 0.546245306 0.055828022 32.28129849 924257.765 0.013985709 0.082150086 5.49E-05 4.260599686 -0.205258708 IAVHCTVR ddPTM_HeLa_A485_30min_R1 1 IAVHCTVR 8 0 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 0 86.953 0.015443 80192000 7701 10788 13042 7368.8 14491 12319 13793 16492 11706 12412 FALSE FALSE TRUE 9414.060882 12049.56276 17866.77852 7771.338885 13048.22516 12964.00379 10846.01287 12447.31114 14055.28683 9317.916826 1.010318192 1.293160583 1.917464907 0.834021062 1.400337157 1.391298509 1.163995459 1.33584699 1.508415141 1 13.18579174 -9.492010513 6.920500517 0.999999983 1.320608784 0.106181697 0.275938999 0 0 0.258874703 0.062786338 3.22E-10 9.492010513 0.320608802 IAVHCTVR ddPTM_HeLa_A486_30min_R1 2 IAVHCTVR 8 0 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 0 ; ; 166.68 3.16E-05 131267000 49428 62743 71806 2693.62 84940 54662 67140 57848 74325 38286.1 FALSE FALSE TRUE 45963.35245 57771.01617 99611.20623 6270.883488 74286.03317 47918.3582 50340.86187 44677.27321 80767.55084 28699.01136 1.601565708 2.012996735 3.4708933 0.218505209 2.58845269 1.669686722 1.754097423 1.556753041 2.814297323 1 14.80871342 -5.237386988 24.99854064 1.723931569 2.32693594 0.13084368 0.818036723 1878.240614 1952122.643 0.213000596 0.368681024 5.79E-06 5.237386988 0.603004371 IAVVGAGIGGSAVAHFLQQHFGPR ddPTM_HeLa_A485_30min_R1 1 IAVVGAGIGGSAVAHFLQQHFGPR 24 0 D6R9J0;Q8NBM8 D6R9J0 PCYOX1L Prenylcysteine oxidase-like 0 0 118.37 9.47E-09 8858000 3397.7 6431.5 6118.9 3180.8 6058.8 4456.8 5825.8 5758.4 3656.5 4882.4 FALSE FALSE TRUE 4153.506643 7183.607978 8382.535739 3354.55905 5455.564598 4690.151156 4581.070238 4346.143371 4390.326011 3665.307534 1.133194583 1.959892291 2.286993836 0.915218987 1.488432975 1.279606449 1.249846076 1.185751354 1.197805633 1 11.83971854 -5.27214738 24.93936073 1.214734225 1.810013464 0.452089944 0.304196816 613.0989241 1427930.731 0.085217359 0.127863917 5.34E-06 5.27214738 0.595279239 IAVVGAGIGGSAVAHFLQQHFGPR ddPTM_HeLa_A486_30min_R1 1 IAVVGAGIGGSAVAHFLQQHFGPR 24 0 D6R9J0;Q8NBM8 D6R9J0 PCYOX1L Prenylcysteine oxidase-like 0 0 85.231 0.00014657 5136200 3979.5 4155 3696.3 1245.7 5397.9 4346.1 4700.3 3933.9 3617.9 4854.8 FALSE FALSE TRUE 3700.5576 3825.742668 5127.60635 2900.052554 4720.845049 3809.92237 3524.235225 3038.236846 3931.502485 3639.126481 1.016880732 1.051280489 1.409021197 0.796908975 1.297246763 1.046933211 0.968428892 0.834880805 1.080342359 1 11.82937648 -6.624157882 4.228422168 0.957924616 1.114573087 0.142220605 0.163472656 0.401442586 13.00371214 0.062416566 0.047431782 2.38E-07 6.624157882 0.156648472 ICDQWDALGSLTHSR ddPTM_HeLa_A485_30min_R1 2 ICDQWDALGSLTHSR 15 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 239.87 1.28E-40 435840000 255866 384000 392010 194532 516160 302230 366390 383320 357460 358560 FALSE FALSE TRUE 312782.509 428905.4596 537030.8119 205158.7906 464769.2981 318054.2955 288107.7834 289310.169 429198.9432 269177.5908 1.161993121 1.593392148 1.995079941 0.762168909 1.726627007 1.181577911 1.070326035 1.074792921 1.594482445 1 18.03819878 -5.256894886 24.98804955 1.220135404 1.584478731 0.22505532 0.323586682 610.8291613 3358654.198 0.086795008 0.143989433 5.53E-06 5.256894886 0.364343327 ICDQWDALGSLTHSR ddPTM_HeLa_A486_30min_R1 2 ICDQWDALGSLTHSR 15 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 211.57 2.47E-25 390530000 226807 287371 260306 56821 362520 223454 284009 275638 279418 196176 FALSE FALSE TRUE 210909.0005 264598.6754 361103.4544 132282.1596 317049.3612 195886.5174 212946.9443 212881.2445 303638.1772 147052.2527 1.434245288 1.79935139 2.455613211 0.899558879 2.156031991 1.332087838 1.448103925 1.447657146 2.064831865 1 17.16596936 -5.256757819 24.99304813 1.517862335 1.886698029 0.155177998 0.440139929 824.2395588 4400283.195 0.115848785 0.192316386 5.54E-06 5.256757819 0.368835695 ICEILQAEKYELVTELNDS(ph)R ddPTM_HeLa_A485_30min_R1 1 ICEILQAEKYELVTELNDSR 20 1 P49454 P49454 CENPF Centromere protein F 1 0 ICEILQAEKYELVTELNDS(1)R 116.72 6.72E-06 18195000 8319.1 11260 7676.8 8064.7 13407 9205.9 13914 18966 8637.4 9556.3 TRUE FALSE FALSE 10169.65509 12576.75905 10516.76778 8505.25414 12072.15201 9687.906689 10941.16023 14314.55876 10370.84695 7174.090281 1.417553264 1.753080678 1.465937473 1.18555159 1.682743251 1.350402115 1.525093748 1.995313441 1.445597497 1 12.80858019 -10.92945578 2.346682571 0.629914123 1.541821818 0.357059781 0.215511908 12357411.58 5814413.955 25061065.44 0.05704667 1.18E-11 10.92945578 0.911907695 ICFKFDHLRK ddPTM_HeLa_A485_30min_R1 1 ICFKFDHLRK 10 2 C9JUG7;F8W9N7;P47755-2;P47755;A0A0D9SET8 C9JUG7 CAPZA2 F-actin-capping protein subunit alpha-2 0 0 81.475 0.016663 6400600 3563.7 7055.2 3006.3 2047.1 3368.3 6541.2 7849.9 17922 2512 1749.4 FALSE FALSE TRUE 4356.43277 7880.244268 4118.455473 2158.927889 3032.940225 6883.687117 6172.704737 13526.6014 3016.135359 1313.306775 3.317147868 6.000307328 3.135943216 1.643886965 2.309392049 5.241492123 4.700124033 10.29965097 2.296596207 1 10.35898824 -6.286362724 21.41201096 5.288337379 3.333343565 0.050346851 2.526983827 284.4117225 244339.2369 0.879527916 0.776388764 5.17E-07 6.286362724 -1.954993814 ICQQHT(ph)KDISERQAR ddPTM_HeLa_A486_30min_R1 1 ICQQHTKDISERQAR 15 2 H9NIL4;Q99679 H9NIL4 GPR21 Probable G-protein coupled receptor 21 1 0 ICQQHT(0.994)KDIS(0.006)ERQAR 60.764 0.026624 658060000 36108 107500 424970 6605.6 284670 42629 61811 80709 108430 27050 TRUE FALSE FALSE 33577.01566 98981.30849 589529.7651 15378.17063 248964.0342 37369.8674 46345.23403 62333.32257 117828.7997 20276.50393 1.655956854 4.881576667 29.0745272 0.758423182 12.27844973 1.843013348 2.285661975 3.07416519 5.811100379 1 14.3075213 -6.267374312 24.51265963 2.900102818 10.03674044 0.174769733 7.509810859 692.8008992 2861419.919 2.632195359 2.383083436 5.40E-07 6.267374312 7.136637618 ICRDPQT(ph)PVLQTK ddPTM_HeLa_A485_30min_R1 4 ICRDPQTPVLQTK 13 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 ICRDPQT(1)PVLQTK;ICRDPQT(1)PVLQTK;ICRDPQT(1)PVLQTK;ICRDPQT(0.988)PVLQT(0.012)K ;;; 183.71 4.37E-17 4365360000 3740090 4051100 3356790 3850070 5157350 4394950 5339280 5823300 3537060 4760330 TRUE FALSE FALSE 4572060.117 4524840.905 4598606.309 4060389.575 4643866.125 4625062.786 4198499.21 4395126.544 4246915.498 3573667.338 1.279374851 1.266161754 1.286803128 1.136196851 1.299467937 1.294206301 1.174843323 1.229864486 1.188391391 1 21.76897391 -13.75693355 0.200626823 6.69E-11 1.279850315 0.704474035 0.048714036 70.43333449 0.761974334 28.14287425 0.118182702 1.75E-14 13.75693355 1.279850314 ICRDPQT(ph)PVLQTK ddPTM_HeLa_A486_30min_R1 4 ICRDPQTPVLQTK 13 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 ICRDPQT(1)PVLQTK;ICRDPQT(1)PVLQTK;ICRDPQT(1)PVLQTK;ICRDPQT(1)PVLQTK ;;; 194.05 9.55E-18 7780200000 10099500 10212100 7089000 3971380 11098900 9927700 11987100 11783300 8147200 10991200 TRUE FALSE FALSE 9391577.204 9402856.004 9834050.65 9245573.342 9706772.469 8702921.311 8987800.793 9100499.818 8853405.856 8238931.979 1.139902263 1.141271226 1.193607457 1.12218105 1.178159074 1.056316684 1.090893919 1.104572758 1.074581739 1 22.9740259 -6.264222947 24.98961196 1.073410122 1.154579053 0.65395047 0.032374017 166.9443231 1498744.931 0.010709145 0.009844669 5.44E-07 6.264222947 0.081168932 ICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_HeLa_A485_30min_R1 1 ICTLPSPPSPLASLAPVADSSTR 23 0 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 ICT(0.006)LPS(0.055)PPS(0.939)PLASLAPVADSSTR 92.819 0.0012914 39491000 46017 45610 55524 53034 68584 57909 61009 54981 54271 75483 TRUE FALSE FALSE 56253.32289 50943.69275 76064.63815 55931.11313 61755.53615 60941.0257 47973.92875 41496.82354 65162.6919 56666.47726 0.992709016 0.899009347 1.34232163 0.987022943 1.089807222 1.07543346 0.846601572 0.732299334 1.149933701 1 15.7902079 -6.748660424 24.82481428 0.909900266 1.067139668 0.154796387 0.147586239 335.9355122 652599.7739 0.056052833 0.04312177 1.78E-07 6.748660424 0.157239402 ICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_HeLa_A486_30min_R1 1 ICTLPSPPSPLASLAPVADSSTR 23 0 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 ICTLPS(0.015)PPS(0.985)PLASLAPVADSSTR 132.28 1.54E-06 44171000 43427 54234 44685 21744 54431 45752 52516 56688 42178 55497 TRUE FALSE FALSE 40382.99156 49936.30032 61988.22871 50621.13088 47603.75643 40107.58341 39375.94134 43781.37989 45834.023 41600.18998 0.970740556 1.200386353 1.490094847 1.216848551 1.144315842 0.964120198 0.946532729 1.05243221 1.101774368 1 15.3443025 -6.019422786 3.292505361 1.012970982 1.235751238 0.381400166 0.123884144 0.268917058 6.032539181 0.044771459 0.047898099 9.56E-07 6.019422786 0.222780256 ICTLPSPPS(ph)PLASLAPVADSSTRVDS(ph)PSHGLVTSSLCIPSPAR ddPTM_HeLa_A485_30min_R1 2 ICTLPSPPSPLASLAPVADSSTRVDSPSHGLVTSSLCIPSPAR 43 1 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 2 0 ICTLPSPPS(1)PLASLAPVADS(0.026)S(0.022)T(0.019)RVDS(0.725)PS(0.207)HGLVTSSLCIPSPAR;ICTLPSPPS(1)PLASLAPVADSSTRVDS(0.973)PS(0.026)HGLVTSSLCIPSPAR ; 257.37 3.28E-65 213460000 28554 59610 66864 27063 84076 60855 77025 106802 49606 45515 TRUE FALSE FALSE 34905.73879 66580.87096 91599.77604 28541.38316 75705.09823 64041.2737 60567.97951 80608.64204 59561.46919 34168.94814 1.021563164 1.948578302 2.680790046 0.835301779 2.215611025 1.874253589 1.772602986 2.359119798 1.743146114 1 15.06039822 IDAHLNK ddPTM_HeLa_A485_30min_R1 1 IDAHLNK 7 0 H0Y8S8;A0AVT1-2;A0AVT1 H0Y8S8 UBA6 Ubiquitin-like modifier-activating enzyme 6 0 0 99.919 0.0076341 92495000 226070 185380 126050 247190 113840 329420 204090 319410 206920 314980 FALSE FALSE TRUE 276358.4916 207058.5784 172681.1404 260693.3638 102505.6899 346667.9218 160484.5042 241074.1967 248446.946 236461.2828 1.168726179 0.875655312 0.730272366 1.102478007 0.433498832 1.466066316 0.678692521 1.019508115 1.050687635 1 17.85124446 -6.25933721 24.99997692 1.021441505 0.868905461 0.105777843 0.258800928 535.4781581 6368179.453 0.083572248 0.079713031 5.50E-07 6.25933721 -0.152536044 IDASKNEEDEGHS(ph)NS(ph)SPR ddPTM_HeLa_A485_30min_R1 3 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 IDASKNEEDEGHS(1)NS(0.738)S(0.262)PR;IDASKNEEDEGHS(0.804)NS(0.8)S(0.396)PR;IDASKNEEDEGHS(0.999)NS(0.61)S(0.391)PR ;; 155.97 1.47E-08 3346210000 2021510 1924910 1869310 3355730 3369130 2720210 4437490 3829690 2381110 4823160 TRUE FALSE FALSE 2471187.925 2150011.48 2560845.557 3539045.033 3033687.587 2862635.989 3489384.011 2890452.523 2858976.936 3620834.976 0.682491177 0.593788862 0.707252768 0.977411303 0.837841992 0.790601065 0.963695952 0.798283419 0.78959051 1 21.78789099 -5.0699154 5.605532828 0.868683804 0.640229751 0.628744331 0.077755212 0.132242459 7.739020281 0.020649668 0.037054371 8.51E-06 5.0699154 -0.228454054 IDASKNEEDEGHS(ph)NSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 IDASKNEEDEGHS(0.996)NS(0.063)S(0.941)PR;IDASKNEEDEGHS(0.96)NS(0.316)S(0.724)PR ; 77.689 0.0043373 2119600000 1904370 1850660 1562240 2897770 3094860 2233000 3755710 3442960 1987850 4127840 TRUE FALSE FALSE 2327990.537 2067078.588 2140177.586 3056067.838 2786724.872 2349916.427 2953271.877 2598568.662 2386793.261 3098845.455 0.751244478 0.667047976 0.690637083 0.986195627 0.899278429 0.758319981 0.953023286 0.838560264 0.770220166 1 21.56329938 -5.238965953 24.40022785 0.877748967 0.699383611 0.522937605 0.080005542 480.540652 521739.5473 0.021463344 0.037134604 5.77E-06 5.238965953 -0.178365355 IDASKNEEDEGHS(ph)NSS(ph)PR ddPTM_HeLa_A486_30min_R1 4 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 IDASKNEEDEGHS(1)NS(0.035)S(0.965)PR;IDASKNEEDEGHS(1)NS(0.395)S(0.605)PR;IDASKNEEDEGHS(1)NS(0.348)S(0.653)PR;IDASKNEEDEGHS(0.998)NS(0.329)S(0.673)PR ;;; 210.32 1.33E-25 8087200000 7123200 7496200 4797450 3681870 9018300 8516100 12077700 11703300 6354100 10450900 TRUE FALSE FALSE 6623900.464 6902173.811 6655151.12 8571579.431 7887140.722 7465470.167 9055731.715 9038714.071 6904878.504 7833926.616 0.845540275 0.881061842 0.849529418 1.094161313 1.006792776 0.952966569 1.155963307 1.153791006 0.881407095 1 22.90130418 -5.25341383 24.88362715 1.041864994 0.860945629 0.497102887 0.081046585 473.0332385 1466660.022 0.022401309 0.037936494 5.58E-06 5.25341383 -0.180919366 IDASKNEEDEGHSNS(ph)SPR ddPTM_HeLa_A485_30min_R1 4 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IDASKNEEDEGHS(0.001)NS(0.583)S(0.416)PR;IDASKNEEDEGHS(0.01)NS(0.907)S(0.083)PR;IDASKNEEDEGHS(0.068)NS(0.48)S(0.453)PR;IDASKNEEDEGHS(0.072)NS(0.464)S(0.464)PR ;;; 200.17 2.13E-25 82003400000 3655400 3560840 3333710 4845270 6107350 4424670 6839390 7188860 4075840 7263450 TRUE FALSE FALSE 4468531.119 3977249.263 4566988.056 5109954.831 5499280.79 4656338.879 5378098.454 5425780.813 4893823.702 5452805.589 0.819492103 0.729395024 0.837548301 0.937123972 1.008523172 0.853934512 0.986299322 0.995043877 0.897487288 1 22.37856729 -5.149048816 2.963819385 0.954314542 0.775166823 0.68340903 0.050587232 0.142914183 2.404939018 0.013914955 0.026995438 7.09E-06 5.149048816 -0.179147719 IDASKNEEDEGHSNS(ph)SPR ddPTM_HeLa_A486_30min_R1 7 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IDASKNEEDEGHS(0.177)NS(0.684)S(0.138)PR;IDASKNEEDEGHS(0.009)NS(0.495)S(0.495)PR;IDASKNEEDEGHS(0.26)NS(0.37)S(0.37)PR;IDASKNEEDEGHS(0.072)NS(0.464)S(0.464)PR;IDASKNEEDEGHS(0.003)NS(0.723)S(0.274)PR;IDASKNEEDEGHS(0.084)NS(0.458)S(0.458)PR;IDASKNEEDEGHS(0.026)NS(0.487)S(0.487)PR ;;;;;; 264.67 6.05E-57 49451000000 3958784 3896233 2569865 1757772 4956620 4471600 6202872 6330850 3003474 5057174 TRUE FALSE FALSE 3681293.685 3587481.307 3564985.551 4092182.049 4334914.501 3919939.456 4650847.818 4889453.656 3263817.545 3790824.714 0.97110628 0.946359059 0.940424794 1.07949651 1.143528079 1.034059803 1.226869658 1.289812647 0.860978228 1 21.85408032 -5.338826807 4.142200707 1.110698834 0.951524833 0.228708822 0.11310481 0.295070444 9.562624264 0.032116015 0.049771881 4.58E-06 5.338826807 -0.159174001 IDASKNEEDEGHSNSS(ph)PR ddPTM_HeLa_A485_30min_R1 9 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IDASKNEEDEGHSNS(0.13)S(0.87)PR;IDASKNEEDEGHS(0.001)NS(0.203)S(0.796)PR;IDASKNEEDEGHSNS(0.06)S(0.94)PR;IDASKNEEDEGHS(0.001)NS(0.248)S(0.751)PR;IDASKNEEDEGHS(0.001)NS(0.197)S(0.802)PR;IDASKNEEDEGHSNS(0.216)S(0.784)PR;IDASKNEEDEGHS(0.05)NS(0.109)S(0.841)PR;IDASKNEEDEGHS(0.001)NS(0.031)S(0.968)PR;IDASKNEEDEGHS(0.03)NS(0.242)S(0.728)PR ;;;;;;;; 251.09 1.39E-46 1.24E+11 22104300 21601210 17550140 30504190 36150160 27871510 43790820 41372070 25025090 41971790 TRUE FALSE FALSE 27021325.28 24127283.6 24042667.11 32170556.66 32550923.14 29330819.17 34434553.57 31225504.96 30047396.02 31508995.19 0.85757496 0.765726849 0.763041378 1.020995956 1.033067635 0.930871295 1.092848355 0.99100288 0.953613273 1 24.90926041 -5.263607191 24.99859784 1.004791186 0.792475634 0.797998925 0.047887806 77.23787139 890688.943 0.013189855 0.020695079 5.45E-06 5.263607191 -0.212315553 IDASKNEEDEGHSNSS(ph)PR ddPTM_HeLa_A486_30min_R1 5 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IDASKNEEDEGHSNS(0.096)S(0.904)PR;IDASKNEEDEGHSNS(0.321)S(0.679)PR;IDASKNEEDEGHS(0.001)NS(0.164)S(0.834)PR;IDASKNEEDEGHS(0.001)NS(0.204)S(0.796)PR;IDASKNEEDEGHSNS(0.038)S(0.961)PR ;;;; 200.04 1.76E-25 1.09E+11 20118560 19459090 12487650 8840980 23847070 20851520 31533170 31092770 14899600 24570850 TRUE FALSE FALSE 18708352.84 17917080.84 17323202.51 20582248.24 20855948.12 18279071.47 23643237.34 24013625.02 16191109.32 18418149.23 1.015756393 0.972794857 0.940550665 1.11749818 1.132358515 0.992448874 1.283692354 1.303802283 0.87908449 1 24.13462476 -5.271388221 22.74276391 1.118289862 0.976010063 0.168307009 0.123234141 307.2820131 702439.0079 0.034762898 0.0524061 5.35E-06 5.271388221 -0.1422798 IDASKNEEDEGHSNSS(ph)PRHS(ph)EAATAQR ddPTM_HeLa_A486_30min_R1 1 IDASKNEEDEGHSNSSPRHSEAATAQR 27 2 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 IDAS(0.003)KNEEDEGHS(0.26)NS(0.344)S(0.398)PRHS(0.994)EAATAQR 103.78 0.00044712 198090000 100520 105280 73853 37264 136710 136310 171600 168850 82513 127490 TRUE FALSE FALSE 93474.06709 96937.22938 102450.8595 86752.47522 119562.557 119493.4581 128663.865 130406.541 89665.29328 95565.67418 0.978113406 1.014351965 1.072046635 0.907778614 1.251103579 1.250380528 1.346339741 1.364575116 0.938258366 1 16.5442049 -5.771485417 24.99858638 1.220663399 1.000233601 0.330798503 0.134593274 212.7749609 529468.4872 0.040938104 0.046961799 1.69E-06 5.771485417 -0.220429799 IDDRDS(ph)DEEGASDR ddPTM_HeLa_A485_30min_R1 3 IDDRDSDEEGASDR 14 1 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 IDDRDS(0.931)DEEGAS(0.069)DR;IDDRDS(0.998)DEEGAS(0.002)DR;IDDRDS(0.996)DEEGAS(0.004)DR ;; 322.14 4.37E-68 6752500000 2275290 2314620 2135730 2918310 3153420 2400890 2946910 2960120 2148770 3709630 TRUE FALSE FALSE 2781420.411 2585294.674 2925825.402 3077729.886 2839454.432 2526596.888 2317278.604 2234145.929 2580008.429 2784887.512 0.99875503 0.928330018 1.050608109 1.105154112 1.019593941 0.907252762 0.832090558 0.8022392 0.926431828 1 21.40918762 -6.331702528 3.924626653 0.873742518 1.022203791 0.478043427 0.065424847 0.193659569 5.843318222 0.024724734 0.021917619 4.66E-07 6.331702528 0.148461272 IDDRDS(ph)DEEGASDR ddPTM_HeLa_A486_30min_R1 2 IDDRDSDEEGASDR 14 1 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 IDDRDS(0.997)DEEGAS(0.003)DR;IDDRDS(1)DEEGASDR ; 300.29 4.72E-57 2706300000 1388410 1729410 1217740 615120 1751680 1672460 1989220 1862010 1419550 1661190 TRUE FALSE FALSE 1291089.629 1592365.253 1689281.54 1432030.446 1531967.961 1466128.89 1491496.116 1438070.97 1542597.737 1245217.211 1.036838888 1.27878513 1.356615958 1.150024617 1.23028171 1.177408147 1.197779875 1.154875597 1.238818194 1 20.24796599 -13.00983846 0.333347927 1.65E-10 1.21452056 0.354048965 0.081027967 195.658641 3.187338944 135.8854171 0.067946111 9.78E-14 13.00983846 1.21452056 IDDRDSDEEGAS(ph)DR ddPTM_HeLa_A486_30min_R1 1 IDDRDSDEEGASDR 14 1 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 IDDRDS(0.29)DEEGAS(0.71)DR 284.24 3.34E-48 2883200000 1094500 1301100 1038400 487790 1398800 1357500 1623100 1448700 1078300 1307300 TRUE FALSE FALSE 1017781.202 1197996.097 1440496.289 1135599.772 1223349.461 1190025.452 1216983.213 1118862.635 1171767.912 979943.5709 1.038612051 1.222515391 1.469978815 1.158842004 1.248387659 1.214381611 1.241891114 1.14176231 1.195750395 1 19.90233915 -8.530657059 0.630814719 0.994708239 1.237832191 0.292284378 0.102477407 2.318689116 1.567206411 0.134265215 0.042697186 2.95E-09 8.530657059 0.243123952 IDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_HeLa_A485_30min_R1 4 IDEDGENTQIEDTEPMSPVLNSK 23 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(0.999)PVLNS(0.001)K ;;; 188.41 3.96E-21 1565060000 462609 342588 286526 597769 465945 385202 592243 483809 393872 798659 TRUE FALSE FALSE 565514.7761 382650.6865 392523.8907 630423.6068 419553.8798 405370.5811 465705.4449 365154.0842 472918.4976 599568.0095 0.943203718 0.638210646 0.654677842 1.051463048 0.699760283 0.67610442 0.776734978 0.609028631 0.788765395 1 19.19356388 -8.032233393 23.31026764 1.000000005 0.751321754 0.228183637 0.133509195 2726.44529 1971685.73 0.12744754 0.032906813 9.28E-09 8.032233393 -0.248678251 IDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_HeLa_A486_30min_R1 6 IDEDGENTQIEDTEPMSPVLNSK 23 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK ;;;;; 221.31 2.74E-38 3104130000 930482 978700 534816 358557 913365 1094557 1191257 1188032 769877 1288433 TRUE FALSE FALSE 865260.0168 901144.2476 741911.0781 834738.8165 798802.2449 959521.686 893191.8988 917543.0482 836610.5582 965800.9905 0.895898871 0.933053762 0.768182147 0.864296915 0.827087829 0.993498345 0.924819821 0.950033244 0.866234935 1 19.88136642 -6.252698834 24.89281321 0.942413257 0.857282855 0.412193071 0.053130926 661.7608062 1884676.065 0.017790279 0.017518927 5.59E-07 6.252698834 -0.085130402 IDELGNLVS(ph)PHATGIR ddPTM_HeLa_A485_30min_R1 1 IDELGNLVSPHATGIR 16 0 H7C1N2;J3KR05;O75128-2;O75128-6;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 IDELGNLVS(1)PHATGIR 169.84 2.83E-12 392370000 75100 68341 72977 75636 118920 62020 68408 71754 83674 107350 TRUE FALSE FALSE 91805.73591 76332.88546 99974.22913 79767.80316 107079.9072 65267.2713 53792.07196 54156.21899 100466.6043 80589.62063 1.13917568 0.947180107 1.240534803 0.98980244 1.328705935 0.809871926 0.66748139 0.671999925 1.246644463 1 16.29830642 -6.28832822 24.82030313 0.845467115 1.117428589 0.297600269 0.187989278 808.0766963 745909.2341 0.065180816 0.057499696 5.15E-07 6.28832822 0.271961473 IDENS(ph)DKEMEVEES(ph)PEKIK ddPTM_HeLa_A486_30min_R1 3 IDENSDKEMEVEESPEKIK 19 2 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 2 0 IDENS(1)DKEMEVEES(1)PEKIK;IDENS(1)DKEMEVEES(1)PEKIK;IDENS(1)DKEMEVEES(1)PEKIK ;; 233.22 3.84E-36 1344240000 1360310 1063500 225371 2353230 618021 2094170 3525870 2598710 843527 6065160 TRUE FALSE FALSE 1264959.294 979224.3868 312640.6868 5478438.366 540503.0434 1835812.597 2643660.033 2007040.462 916644.5995 4546404.458 0.278232899 0.215384354 0.06876658 1.205004618 0.118885825 0.403794386 0.581483688 0.441456646 0.201619677 1 22.1162946 -11.45469055 2.222960101 7.158310759 0.39937242 0.25797501 0.309774748 26771910.19 1796522.892 832459919.5 0.077088885 3.51E-12 11.45469055 -6.758938339 IDENS(ph)DKEMEVEESPEK ddPTM_HeLa_A485_30min_R1 2 IDENSDKEMEVEESPEK 17 1 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 IDENS(1)DKEMEVEESPEK;IDENS(1)DKEMEVEESPEK ; 154.6 1.30E-08 644500000 394420 253640 168821 894740 355980 320190 552300 361060 245660 1143090 TRUE FALSE FALSE 482157.3683 283300.9916 231274.9131 943617.3806 320537.3813 336954.6533 434296.5931 272509.4689 294961.7087 858138.7 0.561864147 0.330134268 0.269507614 1.099609399 0.373526309 0.392657566 0.506091373 0.317558769 0.343722651 1 19.71085132 -10.54122036 3.204775121 1.018048243 0.466855929 0.33027678 0.228089756 377395155 456672559.7 58983987.37 0.056971725 2.88E-11 10.54122036 -0.551192314 IDFDSVSSIMASS(ph)Q ddPTM_HeLa_A485_30min_R1 6 IDFDSVSSIMASSQ 14 0 K7EK53;A0A087WVB9;K7ERF1;Q9UBQ5 K7EK53 EIF3K Eukaryotic translation initiation factor 3 subunit K 1 0 IDFDSVSSIMAS(0.215)S(0.785)Q;IDFDSVSSIMAS(0.074)S(0.926)Q;IDFDSVSSIMAS(0.012)S(0.988)Q;IDFDSVSSIMAS(0.023)S(0.977)Q;IDFDSVSSIMAS(0.017)S(0.983)Q;IDFDSVSSIMAS(0.014)S(0.986)Q ;;;;; 258.91 1.17E-41 360198000 353510 451274 445031 411380 546015 421416 521437 496703 410246 543117 TRUE FALSE FALSE 432147.0799 504046.5687 609666.4862 433852.6477 491651.8294 443480.6901 410027.7252 374885.8104 492578.6092 407727.9272 1.059890802 1.236232632 1.495277722 1.064073905 1.205833097 1.087687795 1.005640521 0.919450902 1.208106132 1 18.63724725 -6.137922666 1.437518711 1.027584668 1.242314384 0.295479879 0.131187166 0.498627335 2.08393558 0.057746494 0.057712988 7.28E-07 6.137922666 0.214729716 IDFDSVSSIMASS(ph)Q ddPTM_HeLa_A486_30min_R1 5 IDFDSVSSIMASSQ 14 0 K7EK53;A0A087WVB9;K7ERF1;Q9UBQ5 K7EK53 EIF3K Eukaryotic translation initiation factor 3 subunit K 1 0 IDFDSVSSIMAS(0.03)S(0.97)Q;IDFDSVSSIMAS(0.022)S(0.978)Q;IDFDSVSSIMAS(0.016)S(0.984)Q;IDFDSVSSIMAS(0.027)S(0.973)Q;IDFDSVSSIMAS(0.016)S(0.984)Q ;;;; 249.41 6.84E-36 515158000 463779 498703 403742 208551 566858 473184 537013 525572 434073 553619 TRUE FALSE FALSE 431270.4871 459183.958 560081.715 485517.2676 495757.3839 414807.3691 402646.6675 405910.7288 471698.7971 414989.1989 1.039233041 1.106496167 1.34962962 1.169951577 1.194627198 0.999561844 0.970258186 0.978123599 1.136653191 1 18.66271426 -6.26216445 24.96023556 1.01263576 1.178105013 0.450889063 0.085364669 61.70616821 2124164.102 0.030581175 0.028607074 5.47E-07 6.26216445 0.165469253 IDFIPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 IDFIPVSPAPSPTR 14 0 Q96E09 Q96E09 FAM122A Protein FAM122A 2 0 IDFIPVS(1)PAPS(0.986)PT(0.014)R;IDFIPVS(1)PAPS(0.893)PT(0.107)R ; 98.439 0.00028662 24730000 83319 89122 107858 138930 132718 94670 116712 103308 101449 156805 TRUE FALSE FALSE 101853.0241 99544.04264 147759.1625 146519.3941 119504.1299 99626.77481 91775.52775 77971.55102 121808.8838 117716.3993 0.865240737 0.845625956 1.255213067 1.244681242 1.015186759 0.846328765 0.779632475 0.662367788 1.034765627 1 16.84495579 -6.21967554 4.426356797 0.837138531 1.05987451 0.233716578 0.160045299 0.295563452 13.27477011 0.058747779 0.057195996 6.03E-07 6.21967554 0.222735979 IDFIPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 4 IDFIPVSPAPSPTR 14 0 Q96E09 Q96E09 FAM122A Protein FAM122A 2 0 IDFIPVS(1)PAPS(0.992)PT(0.008)R;IDFIPVS(1)PAPS(0.989)PT(0.011)R;IDFIPVS(1)PAPS(0.984)PT(0.016)R;IDFIPVS(1)PAPS(0.994)PT(0.006)R ;;; 131.24 3.82E-05 101090000 223302 289130 231571 86677 290718 272628 282898 278165 279967 276607 TRUE FALSE FALSE 207649.6829 266218.2858 321241.4929 201788.4364 254253.4376 238993.9292 212113.9282 214832.9018 304234.765 207342.8068 1.001480042 1.283952359 1.549325476 0.973211656 1.226246724 1.152651172 1.023010788 1.03612421 1.467303205 1 17.66165847 -5.296640291 24.99991636 1.128069873 1.278823101 0.127383354 0.183115725 1246.310275 885135.2792 0.051219237 0.075973073 5.05E-06 5.296640291 0.150753228 IDFSSIAVPGTSS(ph)PR ddPTM_HeLa_A485_30min_R1 4 IDFSSIAVPGTSSPR 15 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 IDFSSIAVPGTS(0.002)S(0.998)PR;IDFSSIAVPGTS(0.008)S(0.992)PR;IDFSSIAVPGTS(0.008)S(0.992)PR;IDFSSIAVPGTS(0.05)S(0.95)PR ;;; 350.45 4.46E-104 4946020000 4636290 5354310 5334320 4667580 6911650 5379240 6128410 6908300 4789830 5981960 TRUE FALSE FALSE 5667616.715 5980449.978 7307706.948 4922558.076 6223501.858 5660888.689 4819025.139 5214028.593 5751104.946 4490767.462 1.262059718 1.331721143 1.627273514 1.09615074 1.385843714 1.260561527 1.07309612 1.161055129 1.280650801 1 22.09853059 -6.32395821 1.020947775 1.134331519 1.367323663 0.316401272 0.141764979 0.672070255 1.468711633 0.082224668 0.070225275 4.74E-07 6.32395821 0.232992144 IDFSSIAVPGTSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 IDFSSIAVPGTSSPR 15 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 IDFSSIAVPGTS(0.079)S(0.921)PR;IDFSSIAVPGT(0.023)S(0.138)S(0.839)PR;IDFSSIAVPGTS(0.039)S(0.961)PR ;; 239.33 3.84E-41 4138700000 4263500 4919400 3971100 1451270 5472900 4337000 4733900 4867300 3770600 4564600 TRUE FALSE FALSE 3964650.667 4529568.828 5508816.27 3378629.903 4786437.849 3801945.035 3549428.15 3759122.042 4097438.644 3421594.449 1.158714373 1.323818148 1.610014381 0.987443121 1.398891049 1.111161797 1.037360857 1.098646288 1.197523174 1 21.70623734 -6.359326193 6.761973506 1.089823416 1.297285469 0.302884558 0.157075022 0.335593628 19.88675979 0.05513992 0.04851455 4.37E-07 6.359326193 0.207462053 IDFTPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 IDFTPVSPAPSPTR 14 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 IDFT(0.001)PVS(0.999)PAPS(0.992)PT(0.008)R;IDFT(0.007)PVS(0.993)PAPS(0.989)PT(0.011)R;IDFT(0.001)PVS(0.999)PAPS(0.994)PT(0.006)R ;; 140.96 1.96E-06 213636000 353512 353065 411950 586440 529770 319168 411500 350442 439280 693810 TRUE FALSE FALSE 432149.5248 394352.8805 564347.4477 618475.7323 477024.2387 335879.143 323579.6634 264495.55 527439.4667 520855.9356 0.829691082 0.757124674 1.08350008 1.187421876 0.915846794 0.64485997 0.621245994 0.507809419 1.012639831 1 18.99052486 -6.146897776 5.492256491 0.719036197 0.968196435 0.206446626 0.187250556 0.318437974 13.27458705 0.064316295 0.064448275 7.13E-07 6.146897776 0.249160238 IDFTPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 4 IDFTPVSPAPSPTR 14 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 IDFT(0.004)PVS(0.996)PAPS(0.98)PT(0.02)R;IDFTPVS(1)PAPS(0.994)PT(0.006)R;IDFT(0.002)PVS(0.998)PAPS(0.982)PT(0.018)R;IDFT(0.008)PVS(0.992)PAPS(0.989)PT(0.011)R ;;; 176.4 2.00E-12 480846000 598110 799700 571900 230575 772420 755240 766820 748470 739860 710170 TRUE FALSE FALSE 556185.5776 736328.8595 793354.996 536790.2526 675535.8811 662066.1675 574953.5254 578059.72 803991.6605 532338.8096 1.044796223 1.383195901 1.490319664 1.008362049 1.268996115 1.243693219 1.080051867 1.085886863 1.51030067 1 19.02198522 -5.263213668 24.99225164 1.177937524 1.313813115 0.108708422 0.176037473 362.6103704 5107684.999 0.04803332 0.075552321 5.45E-06 5.263213668 0.135875591 IDGATQS(ph)SPAEPK ddPTM_HeLa_A485_30min_R1 1 IDGATQSSPAEPK 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 IDGATQS(0.846)S(0.154)PAEPK 263.75 1.57E-41 3613800000 996280 806490 596770 1427500 1060700 906900 1545500 1365000 686120 1674700 TRUE FALSE FALSE 1217899.049 900801.99 817540.0567 1505480.71 955092.9837 954383.8817 1215291.299 1030231.61 823817.9905 1257228.111 0.968717641 0.716498448 0.650271856 1.197460268 0.759681537 0.759117517 0.966643435 0.819446846 0.655265328 1 20.261815 -6.131642148 0.008172463 1.683549906 1.78E-06 0.012208582 0.167464459 36961.51612 109.0468238 10955.53056 11503.02249 7.39E-07 6.131642148 -1.683548129 IDGATQS(ph)SPAEPK ddPTM_HeLa_A486_30min_R1 2 IDGATQSSPAEPK 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 IDGAT(0.015)QS(0.652)S(0.333)PAEPK;IDGAT(0.001)QS(0.743)S(0.256)PAEPK ; 201.48 1.78E-21 5305900000 2544000 2586590 1388580 1330871 2517890 3088010 3872190 3670630 2081190 4033130 TRUE FALSE FALSE 2365678.737 2381619.188 1926275.363 3098334.946 2202072.758 2707042.723 2903327.106 2834907.678 2261589.225 3023207.997 0.782506113 0.787778807 0.637162698 1.024850076 0.728389433 0.895420601 0.960346463 0.937715063 0.74807596 1 21.52764881 -5.254659324 24.99152995 0.891927682 0.741012174 0.36151173 0.099130964 628.5135866 2316717.936 0.026351554 0.044351568 5.56E-06 5.254659324 -0.150915508 IDGATQSS(ph)PAEPK ddPTM_HeLa_A485_30min_R1 6 IDGATQSSPAEPK 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 IDGATQS(0.088)S(0.912)PAEPK;IDGATQS(0.409)S(0.591)PAEPK;IDGAT(0.001)QS(0.372)S(0.627)PAEPK;IDGATQS(0.01)S(0.99)PAEPK;IDGATQS(0.39)S(0.61)PAEPK;IDGAT(0.001)QS(0.438)S(0.562)PAEPK ;;;;; 250.48 9.94E-36 13227170000 7477010 6170350 4581340 10955610 8367310 7205670 11696950 11062100 5840130 14297230 TRUE FALSE FALSE 9140245.079 6891918.758 6276168.311 11554087.23 7534231.237 7582947.739 9197801.077 8349102.63 7012190.522 10733193.68 0.851586708 0.642112587 0.584743786 1.076481761 0.701956143 0.706495006 0.856949138 0.777876826 0.653318176 1 23.35557608 -10.89139854 2.556367606 1.125644004 0.761799283 0.22128351 0.134342956 35211988.65 20906416.04 26704442.95 0.033824237 1.28E-11 10.89139854 -0.363844721 IDGATQSS(ph)PAEPK ddPTM_HeLa_A486_30min_R1 5 IDGATQSSPAEPK 13 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 IDGAT(0.002)QS(0.326)S(0.673)PAEPK;IDGATQS(0.463)S(0.536)PAEPK;IDGATQS(0.413)S(0.586)PAEPK;IDGATQS(0.067)S(0.933)PAEPK;IDGATQS(0.334)S(0.666)PAEPK ;;;; 256.35 3.17E-41 13794250000 8110300 7880700 3894590 4114710 7188490 8951550 12035940 10809750 6130440 12132760 TRUE FALSE FALSE 7541809.852 7256204.631 5402679.549 9579252.826 6286842.554 7847198.774 9024420.509 8348605.9 6661831.475 9094637.925 0.829258945 0.797855252 0.594051087 1.053285783 0.691269142 0.862837953 0.992279251 0.917970124 0.732501011 1 23.11658477 -5.914392447 0.904838971 0.901042757 0.770885794 0.127388381 0.130923046 1.288395289 2.306788357 0.068858899 0.092813512 1.22E-06 5.914392447 -0.130156964 IDGLVS(ph)QIDCGRNSK ddPTM_HeLa_A485_30min_R1 1 IDGLVSQIDCGRNSK 15 1 Q8IVU3-3 Q8IVU3-3 1 0 IDGLVS(0.853)QIDCGRNS(0.147)K 49.049 0.03285 39856000 27895 88884 137450 7463.9 93254 58759 38516 54300 78453 11481 TRUE FALSE FALSE 34100.14651 99278.21061 188298.4748 7871.633957 83969.30433 61835.53038 30286.74195 40982.83986 94197.79749 8618.997992 3.95639337 11.51853275 21.84691016 0.913288756 9.742351072 7.174329364 3.51395162 4.7549425 10.92908916 1 13.07330444 -5.291992768 24.99229247 5.761226916 12.34841317 0.283941683 5.080589596 896.8182209 733584.236 1.42510664 2.114048837 5.11E-06 5.291992768 6.587186249 IDGT(ph)RTPR ddPTM_HeLa_A485_30min_R1 1 IDGTRTPR 8 1 M0QZ39;M0R1C6;M0QXT0;B4DLJ1;Q15853-4;Q15853-3;Q15853-2;Q15853;M0QYU7 M0QZ39 USF2 Upstream stimulatory factor 2 1 0 IDGT(0.571)RT(0.429)PR 71.349 0.0069446 0 116920 164910 152010 143680 256910 201420 258830 297890 154400 189360 TRUE FALSE FALSE 142928.4506 184194.79 208244.8247 151528.8746 231331.1383 211966.0397 203528.8561 224832.0104 185386.6638 142156.0369 1.005433563 1.295722602 1.464903139 1.065933448 1.627304358 1.491080114 1.431728546 1.581586089 1.304106866 1 17.11711584 -4.286684695 2.562408071 1.3971224 0.933843806 0.230472372 0.194557851 0.610042441 5.364952482 0.04858066 0.596786211 5.17E-05 4.286684695 -0.463278594 IDHYLGK ddPTM_HeLa_A485_30min_R1 1 IDHYLGK 7 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 95.62 0.019276 378150000 274590 277400 251740 360370 381220 329830 398140 374410 302940 506700 FALSE FALSE TRUE 335671.5982 309839.5169 344869.1018 380056.1006 343264.3983 347099.3888 313074.1365 282585.3604 363737.2793 380389.0151 0.882442933 0.814533293 0.906622137 0.999124805 0.902403552 0.912485311 0.823036744 0.742885176 0.956224457 1 18.53711606 -6.736433641 24.60416317 0.859110332 0.903432733 0 0.07853947 583.6933607 574318.6912 0.030311756 0.023468617 1.83E-07 6.736433641 0.044322401 IDIFPAKENGDLS(ph)PFSGTSLR ddPTM_HeLa_A486_30min_R1 2 IDIFPAKENGDLSPFSGTSLR 21 1 V9GY71;V9GYH5;P19174 V9GY71 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 IDIFPAKENGDLS(0.967)PFS(0.02)GT(0.006)S(0.006)LR;IDIFPAKENGDLS(0.955)PFS(0.045)GTSLR ; 159.56 2.43E-11 497590000 254161 246995 185267 133503 332236 260200 369114 349381 199890 317129 TRUE FALSE FALSE 236345.6264 227422.2167 257007.344 310801.7309 290563.8629 228099.1695 276757.7731 269834.5732 217216.6261 237717.8342 0.994227577 0.956689755 1.081144563 1.307439687 1.222305696 0.959537471 1.164228061 1.135104457 0.913758224 1 17.85889062 -10.02272948 13.58046664 0.999987722 1.089110476 0.035906032 0.121369581 0 0 0.124125554 0.030104869 9.49E-11 10.02272948 0.089122753 IDIFPAKQENGDLS(ph)PFSGTSLR ddPTM_HeLa_A485_30min_R1 2 IDIFPAKQENGDLSPFSGTSLR 22 1 P19174-2 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 IDIFPAKQENGDLS(0.989)PFS(0.003)GT(0.003)S(0.004)LR;IDIFPAKQENGDLS(0.71)PFS(0.097)GT(0.097)S(0.097)LR ; 141.78 1.14E-09 403000000 173029 223505 176267 225641 424460 316410 442950 595690 231082 337550 TRUE FALSE FALSE 211518.7041 249641.9655 241475.4984 237967.1965 382199.272 332976.7383 348310.1139 449596.0935 277458.0378 253404.9971 0.834706128 0.985150129 0.952923191 0.939078547 1.508254677 1.31401015 1.374519516 1.774219524 1.094919362 1 17.95108545 -5.751030107 24.95608476 1.38302594 0.93383181 0.494412894 0.203989217 156.1147126 374281.0002 0.057576723 0.07350766 1.77E-06 5.751030107 -0.449194129 IDIFPAKQENGDLS(ph)PFSGTSLR ddPTM_HeLa_A486_30min_R1 2 IDIFPAKQENGDLSPFSGTSLR 22 1 P19174-2 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 IDIFPAKQENGDLS(0.98)PFS(0.016)GT(0.004)SLR;IDIFPAKQENGDLS(0.907)PFS(0.025)GT(0.034)S(0.034)LR ; 153.97 3.74E-10 318020000 343310 336950 258180 306150 535850 416260 590000 627700 282450 487630 TRUE FALSE FALSE 319245.7419 310248.8548 358154.2103 712732.672 468638.6964 364906.0734 442375.7596 484786.4126 306932.9934 365524.2741 0.873391357 0.848777706 0.979837006 1.949891492 1.282100067 0.998308729 1.210250019 1.326276932 0.839706184 1 18.47960769 -5.016524552 24.97232217 1.252548625 0.874390065 0.226451959 0.281762311 979.5131514 1480270.065 0.078018639 0.139925551 9.63E-06 5.016524552 -0.37815856 IDIIPNPQER ddPTM_HeLa_A485_30min_R1 2 IDIIPNPQER 10 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 152.97 0.00036045 71417000 113403 126410 127479 131981 173107 119728 160862 140270 129661 183862 FALSE FALSE TRUE 138629.1061 141192.5499 174638.7869 139190.7878 155871.8593 125996.7729 126492.5196 105868.5626 155682.7734 138028.5871 1.004350686 1.022922518 1.265236358 1.00842 1.129272294 0.912830998 0.916422621 0.767004609 1.12790239 1 17.07460757 -6.267100385 24.64618755 0.92849431 1.088176915 0.284370985 0.110467939 459.1078319 1998800.053 0.037484495 0.033967076 5.41E-07 6.267100385 0.159682605 IDILDSALLRPGR ddPTM_HeLa_A485_30min_R1 1 IDILDSALLRPGR 13 1 P62195-2;P62195 P62195-2 PSMC5 26S protease regulatory subunit 8 0 0 184.34 4.51E-17 53444000 42150 46642 47117 46911 61626 51696 63145 56167 48001 65992 FALSE FALSE TRUE 51526.12208 52096.37617 64547.539 49473.62915 55490.29906 54402.72262 49653.5549 42391.95518 57634.36041 49541.40889 1.040061703 1.051572358 1.302900754 0.998631857 1.120079148 1.098126271 1.002263682 0.855687316 1.163357315 1 15.59634728 -6.765116186 5.48998752 0.992317345 1.105372811 0.17056767 0.102856898 0.27026579 25.60371984 0.041218563 0.029310628 1.72E-07 6.765116186 0.113055465 IDILDSALLRPGR ddPTM_HeLa_A486_30min_R1 1 IDILDSALLRPGR 13 1 P62195-2;P62195 P62195-2 PSMC5 26S protease regulatory subunit 8 0 0 139.89 3.88E-06 45661000 39856 50899 47193 24479 68732 52200 60059 55158 49605 60986 FALSE FALSE TRUE 37062.30022 46865.57787 65467.39347 56988.3491 60110.99166 45760.09473 45031.60296 42599.72749 53904.80134 45714.70865 0.810730317 1.025175031 1.432085983 1.246608603 1.314915777 1.000992811 0.985057201 0.931860418 1.17915662 1 15.4803708 -6.29715048 24.45391592 1.013007373 1.177356513 0.157925936 0.167769081 876.4639499 600173.7521 0.063365062 0.055885025 5.04E-07 6.29715048 0.16434914 IDINMS(ph)GFNETDDLKR ddPTM_HeLa_A485_30min_R1 2 IDINMSGFNETDDLKR 16 1 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2 P13797-3 PLS3 Plastin-3 1 0 IDINMS(1)GFNETDDLKR;IDINMS(1)GFNETDDLKR ; 151.82 2.52E-08 484950000 221180 200483 147979 299010 270250 221950 357650 405900 217247 412940 TRUE FALSE FALSE 270380.7279 223927.7429 202722.59 315344.1592 243342.9611 233570.9588 281235.1558 306352.3886 260846.4802 310001.6576 0.872191233 0.722343695 0.653940342 1.017233784 0.784973097 0.753450677 0.907205329 0.988228227 0.841435759 1 18.2419164 -7.121315332 0.406941051 0.998468003 0.76515443 0.274231667 0.101349922 1.481239151 0.638139656 0.120564761 0.11062656 7.56E-08 7.121315332 -0.233313574 IDINMS(ph)GFNETDDLKR ddPTM_HeLa_A486_30min_R1 3 IDINMSGFNETDDLKR 16 1 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2 P13797-3 PLS3 Plastin-3 1 0 IDINMS(1)GFNETDDLKR;IDINMS(1)GFNETDDLKR;IDINMS(1)GFNETDDLKR ;; 154.6 1.65E-08 602418000 358108 364516 227039 172017 373732 411494 508220 454800 307914 485160 TRUE FALSE FALSE 333006.4785 335630.4246 314954.5811 400464.2693 326855.0476 360728.054 381057.9806 351251.9682 334604.2334 363672.7781 0.91567612 0.922891249 0.866038373 1.10116647 0.898761379 0.99190282 1.04780452 0.965846193 0.920069506 1 18.47228141 -5.205059036 24.99994413 0.986707583 0.903670839 0.338187587 0.056193876 348.0168623 154315.3988 0.014882702 0.025777587 6.24E-06 5.205059036 -0.083036744 IDIS(ph)PSTFR ddPTM_HeLa_A485_30min_R1 12 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.938)PS(0.061)T(0.001)FR;IDIS(0.85)PS(0.148)T(0.002)FR;IDIS(0.473)PS(0.473)T(0.055)FR;IDIS(1)PSTFR;IDIS(0.993)PS(0.006)T(0.001)FR;IDIS(0.981)PS(0.017)T(0.002)FR;IDIS(0.991)PS(0.009)TFR;IDIS(0.772)PS(0.226)T(0.002)FR;IDIS(0.993)PS(0.006)T(0.002)FR;IDIS(0.952)PS(0.045)T(0.003)FR;IDIS(0.996)PS(0.004)TFR;IDIS(0.998)PS(0.002)TFR ;;;;;;;;;;; 211.68 2.32E-10 64729790000 1664811 1840643 1927692 2188752 2433577 1752400 2278012 2149551 1852724 2724396 TRUE FALSE FALSE 2035142.463 2055890.187 2640825.489 2308317.98 2191281.529 1844152.954 1791296.127 1622370.247 2224548.713 2045254.216 0.995055992 1.005200318 1.291196697 1.128621548 1.071398123 0.901674198 0.875830551 0.793236476 1.087663673 1 20.96384874 -6.180749633 4.064262747 0.914946311 1.109730246 0.380869734 0.105497539 0.23438674 7.274271791 0.037227917 0.036872925 6.60E-07 6.180749633 0.194783935 IDIS(ph)PSTFR ddPTM_HeLa_A486_30min_R1 6 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.913)PS(0.079)T(0.008)FR;IDIS(0.986)PS(0.014)TFR;IDIS(0.999)PS(0.001)TFR;IDIS(0.922)PS(0.076)T(0.002)FR;IDIS(1)PSTFR;IDIS(0.949)PS(0.051)T(0.001)FR ;;;;; 162 1.26E-05 30655739000 363539 470976 319317 186403.8 427933 424296 465978 458433 356803 442160 TRUE FALSE FALSE 338056.7934 433654.1465 442965.094 433957.4667 374257.6528 371950.6734 349385.3758 354057.8134 387730.9713 331440.258 1.01996298 1.3083931 1.336485485 1.309308258 1.12918586 1.122225392 1.054142843 1.068240218 1.169836681 1 18.33838932 -5.905035581 4.848204155 1.089169871 1.254170593 0.401251734 0.092237946 0.214639537 8.552665229 0.029482803 0.033634323 1.24E-06 5.905035581 0.165000722 IDIS(ph)PSTFRK ddPTM_HeLa_A485_30min_R1 3 IDISPSTFRK 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.7)PS(0.3)T(0.001)FRK;IDIS(0.958)PS(0.041)T(0.001)FRK;IDIS(0.969)PS(0.029)T(0.002)FRK ;; 120.84 0.00013477 10617890000 1733170 2442710 1705080 1596010 2812350 2822470 3603490 4553400 1848150 2104100 TRUE FALSE FALSE 2118707.687 2728363.686 2335860.046 1683195.985 2532342.559 2970250.165 2833574.924 3436671.511 2219056.753 1579586.593 1.341305185 1.727264398 1.478779357 1.065592727 1.603167924 1.880397173 1.793871217 2.175677817 1.404833874 1 20.5911156 -5.994146021 24.95116229 1.73430305 1.419601826 0.086633104 0.331219791 274.4228286 1169648.058 0.099714196 0.112752918 1.01E-06 5.994146021 -0.314701224 IDIS(ph)PSTFRK ddPTM_HeLa_A486_30min_R1 4 IDISPSTFRK 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.927)PS(0.06)T(0.013)FRK;IDIS(0.998)PS(0.002)TFRK;IDIS(0.972)PS(0.028)TFRK;IDIS(0.977)PS(0.023)TFRK ;;; 104.59 0.00059172 10535518000 2316580 2354780 1457500 975203 2906000 2057770 2997700 3120910 1667150 2930380 TRUE FALSE FALSE 2154199.705 2168178.657 2021883.033 2270321.868 2541502.383 1803903.259 2247643.754 2410346.922 1811659.904 2196593.774 0.980700087 0.987064009 0.920462881 1.033564738 1.157019751 0.821227521 1.023240519 1.097311187 0.824758736 1 21.06683666 -6.264936218 24.9987155 0.963760362 1.009862552 0.087736421 0.096903897 1139.160545 8143758.958 0.033806403 0.031154854 5.43E-07 6.264936218 0.04610219 IDIS(ph)PSTLR ddPTM_HeLa_A485_30min_R1 10 IDISPSTLR 9 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.498)PS(0.494)T(0.007)LR;IDIS(0.766)PS(0.231)T(0.003)LR;IDIS(0.992)PS(0.008)TLR;IDIS(0.935)PS(0.065)TLR;IDIS(0.941)PS(0.059)T(0.001)LR;IDIS(0.73)PS(0.269)TLR;IDIS(0.999)PS(0.001)TLR;IDIS(0.978)PS(0.021)T(0.002)LR;IDIS(0.942)PS(0.057)TLR;IDIS(0.978)PS(0.022)TLR ;;;;;;;;; 198.29 1.03E-09 81896500000 2821701 2987263 3265485 3392790 3845971 2816082 3574527 3381452 3053591 4165895 TRUE FALSE FALSE 3449378.653 3336597.422 4473523.79 3578129.527 3463052.623 2963527.699 2810800.105 2552145.595 3666418.705 3127414.044 1.102949147 1.066887011 1.43042262 1.144117624 1.10732144 0.947596851 0.898761746 0.816056192 1.172348353 1 21.5765388 -6.063649916 2.50285521 0.950444321 1.194439968 0.407533489 0.124598257 0.281647805 3.49081343 0.045209317 0.047351145 8.64E-07 6.063649916 0.243995647 IDIS(ph)PSTLR ddPTM_HeLa_A486_30min_R1 7 IDISPSTLR 9 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.986)PS(0.013)T(0.001)LR;IDIS(0.92)PS(0.079)T(0.001)LR;IDIS(0.994)PS(0.006)TLR;IDIS(0.713)PS(0.284)T(0.002)LR;IDIS(0.949)PS(0.05)T(0.001)LR;IDIS(0.998)PS(0.002)TLR;IDIS(0.5)PS(0.5)TLR ;;;;;; 180.19 3.73E-08 50719230000 1482662 1733970 1350316 550448 1686950 1534374 1719630 1757740 1447743 1520683 TRUE FALSE FALSE 1378735.05 1596563.902 1873194.518 1281470.762 1475357.001 1345078.536 1289360.386 1357540.973 1573234.529 1139894.079 1.209529092 1.400624788 1.643305771 1.124201613 1.294293065 1.180003091 1.131122979 1.190936069 1.380158524 1 20.12046834 -5.292076424 24.94599047 1.195770875 1.416100505 0.376356782 0.136432661 698.3726755 568643.4325 0.038005228 0.056377068 5.10E-06 5.292076424 0.22032963 IDIS(ph)PSTLRK ddPTM_HeLa_A485_30min_R1 5 IDISPSTLRK 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.942)PS(0.058)TLRK;IDIS(0.998)PS(0.002)TLRK;IDIS(0.768)PS(0.23)T(0.001)LRK;IDIS(0.998)PS(0.002)TLRK;IDIS(0.998)PS(0.002)TLRK ;;;; 141.73 3.83E-06 26649620000 3360660 3941320 3001640 3610780 5173160 4737010 6213530 7537060 3432690 4696750 TRUE FALSE FALSE 4108227.223 4402223.089 4112071.545 3808027.768 4658102.026 4985032.519 4885958.556 5688584.217 4121599.397 3525936.662 1.165144929 1.248525856 1.166235227 1.080004587 1.321096342 1.413817943 1.38571932 1.613354057 1.168937446 1 21.74957513 -5.901820651 6.400824516 1.359860928 1.171872391 0.155737699 0.157582837 0.304176901 16.89288337 0.047051028 0.053530457 1.25E-06 5.901820651 -0.187988538 IDIS(ph)PSTLRK ddPTM_HeLa_A486_30min_R1 6 IDISPSTLRK 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.977)PS(0.017)T(0.005)LRK;IDIS(0.645)PS(0.033)T(0.322)LRK;IDIS(0.963)PS(0.031)T(0.007)LRK;IDIS(0.661)PS(0.28)T(0.058)LRK;IDIS(0.986)PS(0.012)T(0.003)LRK;IDIS(0.722)PS(0.223)T(0.055)LRK ;;;;; 154.94 6.01E-06 27096180000 7034410 6921560 4297390 2859960 8408550 6621890 8770420 8994220 4885550 8375980 TRUE FALSE FALSE 6541334.185 6373070.378 5961454.496 6658131.414 7353871.252 5804948.538 6575968.152 6946432.448 5309033.408 6278580.09 1.041849286 1.015049627 0.949490874 1.060451777 1.17126343 0.924563907 1.047365496 1.106369967 0.845578671 1 22.5820069 -7.758980401 25 0.922789347 1.037246604 0.279162459 0.074976516 80.89940358 822560.5503 0.055901664 0.018863013 1.74E-08 7.758980401 0.114457258 IDISPS(ph)TFR ddPTM_HeLa_A486_30min_R1 2 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.283)PS(0.711)T(0.006)FR;IDIS(0.313)PS(0.672)T(0.016)FR ; 156.64 3.35E-05 35977400000 373850 423210 328650 137213 439020 393040 412610 408930 344740 390740 TRUE FALSE FALSE 347645.0456 389673.2983 455912.0816 319438.7984 383954.0179 344550.7209 309370.6139 315825.5659 374622.3408 292896.1607 1.186922508 1.330414497 1.556565578 1.090621323 1.310887848 1.176357929 1.056246736 1.0782851 1.27902783 1 18.16002976 -6.052042351 1.172215135 1.110124894 1.331258954 0.322366471 0.130270125 0.569066583 1.638618301 0.061202962 0.066988097 8.87E-07 6.052042351 0.22113406 IDISPS(ph)TFRK ddPTM_HeLa_A486_30min_R1 1 IDISPSTFRK 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.391)PS(0.599)T(0.01)FRK 66.498 0.010221 8430200000 359430 345290 225850 151030 441150 341010 464250 495420 250470 463980 TRUE FALSE FALSE 334235.8131 317927.9629 313305.1685 351605.4726 385816.8534 298939.6533 348089.7397 382623.6809 272180.9413 347796.388 0.961010018 0.914120945 0.900829276 1.010952053 1.109318172 0.859524893 1.000843458 1.100137017 0.782587027 1 18.40788342 -5.26045154 24.98272946 0.985829642 0.924200167 0.065233142 0.094146773 236.0657715 5970084.209 0.025397945 0.040965954 5.49E-06 5.26045154 -0.061629475 IDISPS(ph)TLR ddPTM_HeLa_A486_30min_R1 4 IDISPSTLR 9 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.195)PS(0.641)T(0.164)LR;IDIS(0.021)PS(0.903)T(0.076)LR;IDIS(0.409)PS(0.552)T(0.04)LR;IDIS(0.344)PS(0.655)T(0.001)LR ;;; 201.09 8.66E-10 18979490000 2836572 3505940 2627473 1025784 3648610 3195264 3661950 3619890 2936493 3184577 TRUE FALSE FALSE 2637742.951 3228116.546 3644900.912 2388076.992 3190967.312 2801064.815 2745691.378 2795720.069 3191030.578 2387138.191 1.104981254 1.352295631 1.526891457 1.000393275 1.336733384 1.173398685 1.150202107 1.171159709 1.336759887 1 21.18685066 -5.265184232 24.99831122 1.180726467 1.330480058 0.206040759 0.143124687 535.494985 3574636.467 0.038945854 0.060348357 5.43E-06 5.265184232 0.149753591 IDISPS(ph)TLRK ddPTM_HeLa_A485_30min_R1 1 IDISPSTLRK 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.222)PS(0.777)T(0.001)LRK 133.15 3.63E-05 207620000 197240 250460 188060 213770 310540 297050 379490 469730 228800 316210 TRUE FALSE FALSE 241115.3575 279749.1183 257631.2198 225447.7138 279621.5472 312603.0787 298408.8614 354527.981 274718.0613 237384.6664 1.015715805 1.178463304 1.085290064 0.949714728 1.177925902 1.316862978 1.257068815 1.493474647 1.157269614 1 17.85686722 -5.993598807 6.854044255 1.273777507 1.066906302 0.305407764 0.129655861 0.150759331 37.80448814 0.039724221 0.043515231 1.01E-06 5.993598807 -0.206871205 IDISPS(ph)TLRK ddPTM_HeLa_A486_30min_R1 1 IDISPSTLRK 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.3)PS(0.565)T(0.135)LRK 92.19 0.00088298 0 441840 444850 288190 176260 493550 417210 538640 552670 319470 524790 TRUE FALSE FALSE 410869.2977 409598.4659 399784.886 410342.1877 431644.3568 365738.8721 403866.5748 426839.1057 347161.9168 393379.1682 1.04446125 1.041230698 1.016283826 1.043121296 1.097273043 0.929736249 1.026659792 1.085057726 0.882512204 1 18.58556103 -6.253677418 24.99524053 0.992725964 1.045985894 0.249920088 0.054212617 1031.265132 3320911.704 0.017813215 0.017492235 5.58E-07 6.253677418 0.05325993 IDKLMIEMDGTENK ddPTM_HeLa_A486_30min_R1 1 IDKLMIEMDGTENK 14 1 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 0 157.68 2.63E-06 0 183720 151130 80446 103960 177600 174110 240650 223950 126670 281020 FALSE FALSE TRUE 170842.1767 139153.9084 111596.8456 242024.1338 155323.7519 152630.0784 180436.8247 172961.4738 137649.8576 210650.7629 0.811020926 0.660590574 0.529771856 1.148935473 0.737351956 0.724564565 0.856568579 0.82108164 0.653450553 1 17.68449362 -11.48429931 2.207916177 3.654193162 0.773790388 0.162598651 0.155499362 19673988.44 1051542.425 262557239.8 0.039292558 3.28E-12 11.48429931 -2.880402773 IDKTDYMVGSYGPR ddPTM_HeLa_A485_30min_R1 1 IDKTDYMVGSYGPR 14 1 J3KTF8;J3QQX2;P52565 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 66.285 0.034681 15333000 16857 20071 21622 20271 31893 21612 28626 31740 20814 28564 FALSE FALSE TRUE 20606.78149 22418.12886 29620.87757 21378.3534 28717.62094 22743.5709 22509.82125 23955.71523 24991.17888 21443.52048 0.960979402 1.045450017 1.381343963 0.99696099 1.339221373 1.060626725 1.049726012 1.117154026 1.165441976 1 14.38825416 IDLAVLLGK ddPTM_HeLa_A485_30min_R1 2 IDLAVLLGK 9 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77 F8W726 UBAP2L Ubiquitin-associated protein 2-like 0 0 ; ; 143.01 0.00055669 10193000 30775.2 34684 27864.4 32602.9 42831 35482.6 45523 50818 32469.6 45751 FALSE FALSE TRUE 37621.03707 38739.99209 38172.60109 34383.91387 38566.59525 37340.41407 35796.63916 38354.80582 38985.95089 34346.11768 1.095350497 1.127929289 1.111409489 1.00110045 1.122880775 1.087180054 1.042232473 1.116714447 1.135090471 1 15.06785941 -10.38486755 3.450423393 0.999309292 1.092032671 0.330291519 0.03982723 18675700.25 13969347.4 115185.8603 0.010097962 4.12E-11 10.38486755 0.092723379 IDLAVLLGK ddPTM_HeLa_A486_30min_R1 1 IDLAVLLGK 9 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77 F8W726 UBAP2L Ubiquitin-associated protein 2-like 0 0 143.01 0.00055669 9879000 30599 33851 20881 12175 34011 29967 36755 34729 26399 34876 FALSE FALSE TRUE 28454.16811 31168.52348 28966.68241 28344.01529 29745.02324 26269.97622 27558.51025 26821.96483 28687.28658 26142.8226 1.08841224 1.192240178 1.108016638 1.084198739 1.137789278 1.004863806 1.054152058 1.025978153 1.097329352 1 14.67412729 -6.253102337 24.88301066 1.039193769 1.123134824 0.559125499 0.037991299 454.5864121 1356773.1 0.012409743 0.012207462 5.58E-07 6.253102337 0.083941055 IDLLAS(ph)DPHEALICK ddPTM_HeLa_A486_30min_R1 1 IDLLASDPHEALICK 15 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2;A0A0U1RRA9;E9PH68;E7EWN5;Q3B891;A0A494C182;A0A0A0MSN1;H0Y8D8;C9IZW4 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 IDLLAS(1)DPHEALICK 147.92 4.88E-08 30334000 80381 108340 60653 36438 99005 116960 116070 119400 94169 110520 TRUE FALSE FALSE 74746.70699 99754.74383 84139.46594 84829.50547 86586.86972 102530.6644 87028.05834 92215.22648 102331.6447 82845.07264 0.902246864 1.204111973 1.015624264 1.023953541 1.0451662 1.237619343 1.050491666 1.11310454 1.235217032 1 16.33812827 -6.102829852 24.90026488 1.130871887 1.045362991 0.173095805 0.096547111 65.04102062 15730.98712 0.030292187 0.030292206 7.89E-07 6.102829852 -0.085508896 IDLNLDIS(ph)PQRPRPTLQLPLANDGGSR ddPTM_HeLa_A485_30min_R1 1 IDLNLDISPQRPRPTLQLPLANDGGSR 27 2 O14733;O14733-4;O14733-2 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 0 IDLNLDIS(0.963)PQRPRPT(0.035)LQLPLANDGGS(0.002)R 40.112 0.034022 127060000 27431 35386 36269 32715 44697 31877 43359 39399 39485 46604 TRUE FALSE FALSE 33532.93131 39524.08488 49686.41238 34502.13761 40246.80974 33546.03043 34094.99544 29736.33347 47409.27732 34986.48048 0.958453976 1.129695938 1.42016035 0.986156285 1.150353199 0.958828381 0.974519156 0.849937835 1.355074208 1 15.09450992 IDLPEVQIEHDPELEKES(ph)PGLK ddPTM_HeLa_A485_30min_R1 1 IDLPEVQIEHDPELEKESPGLK 22 1 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 1 0 IDLPEVQIEHDPELEKES(1)PGLK 199.1 5.68E-27 208970000 325620 205680 115450 654500 329500 286650 481330 466950 249120 874040 TRUE FALSE FALSE 398053.0456 229732.4868 158159.7593 690253.6777 296693.8231 301658.5508 378489.9134 352429.7804 299116.0989 656157.9135 0.606642147 0.350117681 0.241039171 1.051962742 0.452168323 0.459734684 0.576827476 0.537111224 0.455859928 1 19.32368354 -10.41090439 2.837729585 1.01009199 0.525392685 0.329079802 0.203161562 20862302.28 23829050.56 1704394.425 0.05160754 3.88E-11 10.41090439 -0.484699306 IDLRPVLGEGVPILASFLR ddPTM_HeLa_A486_30min_R1 1 IDLRPVLGEGVPILASFLR 19 1 Q86VP6-2;Q86VP6;A0A0C4DGH5 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 166.28 1.08E-14 56558000 7808.1 9223.2 8078.3 3088.2 8789.5 8436.9 9698.4 8591.5 8864 8496.8 FALSE FALSE TRUE 7260.792511 8492.320042 11206.4341 7189.485669 7687.038951 7396.041058 7271.757741 6635.403001 9632.338657 6369.145975 1.139994677 1.333353023 1.759487716 1.12879901 1.206918319 1.161229635 1.141716294 1.041804196 1.512343836 1 12.63688422 IDPNVLLDPADEKLLEEEIQAPT(ph)SSKR ddPTM_HeLa_A486_30min_R1 1 IDPNVLLDPADEKLLEEEIQAPTSSKR 27 2 Q8N7H5;Q8N7H5-3;Q8N7H5-2 Q8N7H5 PAF1 RNA polymerase II-associated factor 1 homolog 1 0 IDPNVLLDPADEKLLEEEIQAPT(0.427)S(0.427)S(0.145)KR 101.81 0.0010842 52101000 38822 38802 20473 45370 59540 71613 112470 103720 33111 85219 TRUE FALSE FALSE 36100.77828 35727.18821 28400.69389 105623.6529 52071.93801 62778.11617 84328.81641 80105.22019 35981.08814 63879.60772 0.565137758 0.559289411 0.444597187 1.653479986 0.815157448 0.982756758 1.320121075 1.254003007 0.563264075 1 15.96306783 -5.216827471 24.99846344 1.089099715 0.526635951 0.458954754 0.279135001 396.3478687 222094.5885 0.073756679 0.127749669 6.07E-06 5.216827471 -0.562463764 IDPWSFVSAGPRPS(ph)PLPS(ph)PQPAPR ddPTM_HeLa_A485_30min_R1 1 IDPWSFVSAGPRPSPLPSPQPAPR 24 1 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 2 0 IDPWS(0.022)FVS(0.028)AGPRPS(0.95)PLPS(1)PQPAPR 61.499 0.022307 48758000 59968 64669 67142 65531 77812 66852 81809 90819 64948 89180 TRUE FALSE FALSE 73307.67471 72231.477 91980.61981 69110.7926 70064.76407 70352.26735 64329.83883 68545.49785 77982.46786 66949.06724 1.09497679 1.078901917 1.37388949 1.032289103 1.046538316 1.050832674 0.960877298 1.02384545 1.164802903 1 16.03077633 -5.4067821 20.44414627 1.038274555 1.177380946 0.350513253 0.08890796 6.053695613 1049.235488 0.025059372 0.037169043 3.92E-06 5.4067821 0.139106391 IDQLEGDHQLIQEALIFDNK ddPTM_HeLa_A485_30min_R1 1 IDQLEGDHQLIQEALIFDNK 20 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H7C5W8;H0YJW3 P12814-2 ACTN1 Alpha-actinin-1 0 0 137.12 6.31E-07 11439000 33720 26222 21818 40924 40579 31852 46426 37914 29216 60111 FALSE FALSE TRUE 41220.89767 29288.4348 29889.38612 43159.57449 36538.81228 33519.72147 36506.70583 28615.53205 35079.38321 45126.43396 0.913453469 0.649030562 0.66234762 0.956414472 0.809698642 0.742795708 0.808987164 0.634119064 0.777357751 1 15.46168516 -11.3684528 2.149650571 2.434822429 0.768411952 0.308216633 0.101982982 7863749.386 697485.1037 55018566.4 0.025852237 4.28E-12 11.3684528 -1.666410477 IDRDS(ph)YSPR ddPTM_HeLa_A486_30min_R1 2 IDRDSYSPR 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IDRDS(0.679)YS(0.321)PR;IDRDS(0.636)YS(0.364)PR ; 142.76 0.0015414 2701600000 2734000 3010800 2481000 870450 3224400 2585900 2958600 2993800 2428400 2747500 TRUE FALSE FALSE 2542360.718 2772213.243 3441709.643 2026451.59 2819965.686 2266877.95 2218326.987 2312177.094 2638895.667 2059508.117 1.234450448 1.346055993 1.671131867 0.98394931 1.369242327 1.10068901 1.077114952 1.122684138 1.281323266 1 20.97386838 -5.275246438 24.99631138 1.144780816 1.410097116 0.42632178 0.150319101 759.2413299 1374529.805 0.041623356 0.062094433 5.31E-06 5.275246438 0.2653163 IDRDSYS(ph)PR ddPTM_HeLa_A485_30min_R1 5 IDRDSYSPR 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IDRDS(0.039)YS(0.961)PR;IDRDS(0.25)YS(0.75)PR;IDRDS(0.003)Y(0.001)S(0.996)PR;IDRDS(0.09)YS(0.91)PR;IDRDS(0.286)YS(0.714)PR ;;;; 146.17 0.00014378 5621510000 5357200 6533100 6306280 5637260 8343430 6674360 7602070 8753040 6147890 7408690 TRUE FALSE FALSE 6548890.658 7297089.215 8639235.398 5945209.24 7512728.814 7023819.169 5977825.641 6606343.216 7381715.131 5561839.93 1.177468381 1.31199195 1.553305292 1.068928505 1.35076322 1.26285892 1.074792823 1.187798157 1.327207403 1 22.40713079 -6.576242716 8.844466947 1.163472625 1.296763614 0.191616036 0.140390284 0.567868493 86.93948684 0.053123764 0.041130283 2.65E-07 6.576242716 0.13329099 IDRDSYS(ph)PR ddPTM_HeLa_A486_30min_R1 3 IDRDSYSPR 9 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IDRDS(0.044)Y(0.003)S(0.953)PR;IDRDS(0.079)Y(0.002)S(0.92)PR;IDRDS(0.28)Y(0.002)S(0.718)PR ;; 114.71 0.00034734 2995780000 2108300 2488450 2224030 687340 2668060 1991250 2329590 2385660 1960910 2114860 TRUE FALSE FALSE 1960519.057 2291256.159 3085233.978 1600162.256 2333407.036 1745589.821 1746701.942 1842497.297 2130883.258 1585285.291 1.236697943 1.445327332 1.946169561 1.009384409 1.471916159 1.101120304 1.101821831 1.162249664 1.344163899 1 20.59631106 -5.290495783 24.99874033 1.183711535 1.532991443 0.390260655 0.212867514 734.1760728 631648.3934 0.059461826 0.088211394 5.12E-06 5.290495783 0.349279908 IDRT(ph)DAISEEK ddPTM_HeLa_A486_30min_R1 1 IDRTDAISEEK 11 1 Q9NR31-2;Q9NR31;H0Y5E8 Q9NR31-2 SAR1A GTP-binding protein SAR1a 1 0 IDRT(1)DAISEEK 121.99 0.0001258 324660000 210310 228540 125100 99373 204520 293860 271550 253710 173280 254470 TRUE FALSE FALSE 195568.355 210429.6581 173542.0703 231345.366 178867.1945 257606.5409 203605.3178 195945.7715 188300.0499 190749.0557 1.025265128 1.103175359 0.909792553 1.212825747 0.937709463 1.350499692 1.067398825 1.02724373 0.987161112 1 17.54131639 -7.324959422 3.656337849 0.999861977 1.089949407 0.092592539 0.119859499 0.615435798 16.34642549 0.07060544 0.031713493 4.73E-08 7.324959422 0.09008743 IDRT(ph)EFIPS(ph)T(ph)DPFQKALREEEK ddPTM_HeLa_A486_30min_R1 1 IDRTEFIPSTDPFQKALREEEK 22 3 Q9H6E4 Q9H6E4 CCDC134 Coiled-coil domain-containing protein 134 3 0 IDRT(1)EFIPS(1)T(1)DPFQKALREEEK 42.711 0.0074844 0 262250 166840 28793 190570 78425 247270 336180 239910 97781 855730 TRUE FALSE FALSE 243867.6293 153618.9908 39942.4207 443656.5909 68588.20522 216764.3415 252064.2083 185287.7302 106256.7358 641449.6381 0.380182036 0.23948722 0.062268989 0.691646802 0.106926875 0.337928855 0.392960247 0.288857798 0.16565094 1 19.29097647 -10.76721333 2.681845292 1.166824338 0.29758253 0.609654928 0.168941778 27965566.07 21459633.16 30729294.16 0.043179097 1.71E-11 10.76721333 -0.869241808 IDS(ph)LSAQLSQLQK ddPTM_HeLa_A485_30min_R1 1 IDSLSAQLSQLQK 13 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 IDS(0.999)LS(0.001)AQLSQLQK 86.497 0.0016797 0 37605 37518 35518 64142 56418 43357 58755 62772 44594 78161 TRUE FALSE FALSE 45970.10251 41905.40374 48657.58623 67645.91504 50800.82582 45627.10548 46201.51427 47377.06858 53543.60676 58676.90115 0.78344462 0.714172066 0.829246011 1.152854253 0.865772132 0.777599099 0.78738845 0.807422813 0.912515926 1 15.84050506 -4.99611414 23.74237891 0.889651549 0.754533373 0.239637245 0.10713795 100.7226435 615367.1946 0.030190395 0.062329408 1.01E-05 4.99611414 -0.135118176 IDS(ph)LSAQLSQLQK ddPTM_HeLa_A486_30min_R1 3 IDSLSAQLSQLQK 13 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 IDS(0.979)LS(0.021)AQLSQLQK;IDS(0.974)LS(0.026)AQLSQLQK;IDS(0.919)LS(0.081)AQLSQLQK ;; 211.7 4.76E-22 86875000 187431 210495 133440 121462 193287 232872 285003 251468 161773 253267 TRUE FALSE FALSE 174293.0548 193814.6096 185111.5416 282769.6743 169043.1421 204142.6203 213692.2349 194214.2259 175795.6139 189847.2947 0.918069731 1.0208974 0.975054935 1.48945854 0.890416386 1.075299075 1.125600632 1.023002336 0.925984298 1 17.53447992 -7.532545584 6.289759968 0.965360457 1.07456345 0.068948696 0.157699564 0.429082717 73.28515359 0.103215073 0.04069804 2.93E-08 7.532545584 0.109202993 IDS(ph)PGFKPASQQVYR ddPTM_HeLa_A485_30min_R1 6 IDSPGFKPASQQVYR 15 1 A0A087X0K9;G5E9E7;Q07157-2 A0A087X0K9 TJP1 Tight junction protein ZO-1 1 0 IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR ;;;;; 186.45 3.09E-18 6662920000 6810020 5134520 3603200 9687480 7699360 6217290 10405200 9258290 5189260 13778630 TRUE FALSE FALSE 8324885.455 5734957.45 4936173.622 10216682.5 6932784.684 6542817.691 8182044.017 6987679.861 6230696.883 10343871.12 0.804813339 0.554430482 0.477207572 0.987703964 0.670231155 0.63253086 0.791004057 0.675538179 0.602356392 1 23.30227287 -10.22329048 4.230425014 1.000143295 0.687532184 0.31814644 0.13683572 187164379.1 85.37500124 294979.068 0.033082487 5.98E-11 10.22329048 -0.312611111 IDS(ph)PGFKPASQQVYR ddPTM_HeLa_A486_30min_R1 6 IDSPGFKPASQQVYR 15 1 A0A087X0K9;G5E9E7;Q07157-2 A0A087X0K9 TJP1 Tight junction protein ZO-1 1 0 IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR;IDS(1)PGFKPASQQVYR ;;;;; 166.57 2.39E-12 10321250000 8194120 7572490 3623990 4067430 7205640 8937720 11254100 10350070 5508260 11387820 TRUE FALSE FALSE 7619754.502 6972418.314 5027295.982 9469182.597 6301841.441 7835074.978 8438205.146 7993585.001 5985720.412 8536235.75 0.892636371 0.816802455 0.588935935 1.109292535 0.738245947 0.91786066 0.988515945 0.936429737 0.701213109 1 23.02516859 -5.256121829 24.9996359 0.906488585 0.771192698 0.201578882 0.13346089 779.2608544 3663561.496 0.035692491 0.059556745 5.54E-06 5.256121829 -0.135295887 IDS(ph)PPIRR ddPTM_HeLa_A485_30min_R1 1 IDSPPIRR 8 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 IDS(1)PPIRR 92.201 0.0023049 0 92190 85889 82322 134410 130730 106560 155910 138280 86627 219760 TRUE FALSE FALSE 112697.3474 95932.97142 112776.3335 141752.478 117714.0622 112139.3168 122598.5548 104366.6132 104012.2443 164977.8764 0.68310582 0.581489916 0.683584587 0.859221134 0.713514228 0.679723362 0.743121184 0.63260975 0.630461772 1 17.33191305 -10.53310526 2.839411528 1.014549991 0.691581158 0.630188394 0.071309375 17124025.67 18127903.79 1914792.842 0.019446835 2.93E-11 10.53310526 -0.322968833 IDS(ph)PPIRR ddPTM_HeLa_A486_30min_R1 2 IDSPPIRR 8 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 IDS(1)PPIRR;IDS(1)PPIRR ; 107.55 0.0011282 0 289050 288890 179035 139982 301040 313910 401530 414300 241435 438470 TRUE FALSE FALSE 268789.0877 265997.3043 248362.1467 325885.1703 263280.7561 275182.9758 301062.947 319972.9341 262362.7802 328674.258 0.817797808 0.809303734 0.755648307 0.991514128 0.801038565 0.837251379 0.915991866 0.973525995 0.7982456 1 18.32629894 -6.696301674 0.025818192 1.753820521 6.64E-09 0.316255139 0.07159195 299.6095953 4.406603624 142.5475726 155.4800018 2.01E-07 6.696301674 -1.753820514 IDS(ph)VYLDPLVFR ddPTM_HeLa_A486_30min_R1 1 IDSVYLDPLVFR 12 0 O60443-3;O60443;H7BZJ0;H7C147;C9JSR4 O60443-3 DFNA5 Non-syndromic hearing impairment protein 5 1 0 IDS(1)VYLDPLVFR 63.091 0.023372 9220100 20815 28331 18630 19379 27009 28492 38280 34737 14960 27951 TRUE FALSE FALSE 19355.97599 26085.94838 25844.03493 45115.29136 23621.27937 24976.94673 28701.93912 26828.1434 16256.74485 20951.88767 0.923829695 1.245040485 1.233494344 2.15328051 1.127405785 1.192109614 1.369897528 1.280464263 0.775908362 1 14.35479261 -7.697752475 6.393089707 0.890227462 1.332322315 0.235221707 0.307899673 0.27414596 20.55905443 0.224419976 0.080935921 2.01E-08 7.697752475 0.442094853 IDSFSVQS(ph)LDSR ddPTM_HeLa_A486_30min_R1 1 IDSFSVQSLDSR 12 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 IDSFSVQS(1)LDSR 175.15 3.78E-10 0 42593 32657 36117 14917 50479 36483 51507 44080 34513 40854 TRUE FALSE FALSE 39607.45065 30069.14039 50102.46965 34727.52986 44147.45312 31982.09839 38619.40381 34043.94626 37504.61463 30623.89249 1.293351283 0.981884991 1.636058175 1.134001169 1.441601623 1.044351185 1.261087363 1.111679264 1.224684767 1 14.90237005 -6.274635066 24.90109969 1.143635907 1.289590901 0.182217149 0.177179516 1507.593401 2844916.059 0.059508767 0.052779554 5.31E-07 6.274635066 0.145954994 IDSLS(ph)LNGEFGYQK ddPTM_HeLa_A485_30min_R1 1 IDSLSLNGEFGYQK 14 0 Q8TEQ0;Q8TEQ0-2 Q8TEQ0 SNX29 Sorting nexin-29 1 0 IDS(0.015)LS(0.985)LNGEFGYQK 113.72 0.00013482 0 37287 33155 35760 38492 39057 34890 36684 39076 33263 50114 TRUE FALSE FALSE 45581.36451 37032.18884 48989.1121 40594.72049 35168.34794 36716.78645 28846.16372 29492.54973 39938.57899 37621.50208 1.211577475 0.984335733 1.302157261 1.079029764 0.934793828 0.975952166 0.766746731 0.783928023 1.061589165 1 15.19926983 -5.72261255 2.954387092 0.900159002 1.153631132 0.49037047 0.113161322 0.212937602 3.800660192 0.035881818 0.04591253 1.89E-06 5.72261255 0.253472129 IDSLS(ph)LNGEFGYQK ddPTM_HeLa_A486_30min_R1 2 IDSLSLNGEFGYQK 14 0 Q8TEQ0;Q8TEQ0-2 Q8TEQ0 SNX29 Sorting nexin-29 1 0 IDS(0.001)LS(0.999)LNGEFGYQK;IDSLS(1)LNGEFGYQK ; 210.1 3.03E-22 214847000 295070 352470 208732 137728 308910 339440 391410 388630 246190 359110 TRUE FALSE FALSE 274387.1167 324538.9935 289558.6204 320637.7444 270163.6273 297563.344 293475.0781 300147.4327 267529.9474 269186.5186 1.019319683 1.205628704 1.075680246 1.191135968 1.003629858 1.105416963 1.09022948 1.115016585 0.99384601 1 18.03824663 -7.764382105 24.94341744 0.996922936 1.10299646 0.32189157 0.060212895 84.04897029 712358.2217 0.047141387 0.014229943 1.72E-08 7.764382105 0.106073524 IDSNIS(ph)PK ddPTM_HeLa_A485_30min_R1 1 IDSNISPK 8 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 IDSNIS(1)PK 133.91 0.00050447 249400000 338010 206440 207810 771260 495270 259180 513800 399250 286830 990110 TRUE FALSE FALSE 413199.1584 230581.3622 284687.5667 813391.9809 445959.1798 272750.264 404022.4326 301333.3115 344394.15 743293.7986 0.555902873 0.310215641 0.383008128 1.094307503 0.599976995 0.366948123 0.543556846 0.405402698 0.463335159 1 19.50357305 -10.05274855 4.504071115 1.000022412 0.52562876 0.315798028 0.2098616 57019871.41 31816020.03 13404.91885 0.053762987 8.86E-11 10.05274855 -0.474393652 IDSNIS(ph)PK ddPTM_HeLa_A486_30min_R1 2 IDSNISPK 8 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 IDSNIS(1)PK;IDSNIS(1)PK ; 130.95 0.0005418 1843780000 2007700 2845700 1355020 2334200 2553600 3593200 4943500 4449800 2157030 4652000 TRUE FALSE FALSE 1866970.598 2620196.368 1879720.033 5434135.564 2233303.677 3149907.517 3706584.013 3436677.678 2344003.097 3487108.921 0.535392109 0.751395046 0.539048271 1.558349822 0.640445632 0.903300582 1.062938984 0.985537807 0.672190961 1 21.7336 IDSRPPS(ph)PEPPKQEYWGSK ddPTM_HeLa_A485_30min_R1 1 IDSRPPSPEPPKQEYWGSK 19 2 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 IDSRPPS(1)PEPPKQEYWGSK 166.57 8.13E-13 406120000 1052000 584230 440510 1568100 803110 752590 1086200 793750 727000 1937500 TRUE FALSE FALSE 1286013.771 652550.6164 603472.9802 1653761.332 723149.5485 791994.4487 854124.4966 599081.5679 872902.2316 1454516.907 0.88415182 0.448637354 0.414895817 1.136983231 0.497175072 0.54450687 0.587222116 0.411876662 0.600132063 1 20.47210864 -10.11751176 5.18365084 1.000010484 0.606412945 0.219819042 0.217768923 2.62E-05 4.45E-06 0.209071539 0.050705947 7.63E-11 10.11751176 -0.393597539 IDSRPPS(ph)PEPPKQEYWGSK ddPTM_HeLa_A486_30min_R1 2 IDSRPPSPEPPKQEYWGSK 19 2 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 IDSRPPS(1)PEPPKQEYWGSK;IDS(0.129)RPPS(0.871)PEPPKQEYWGSK ; 152.23 5.30E-09 1740170000 1337560 1527120 623600 532020 1065620 1722890 1837740 1598140 1277300 1850760 TRUE FALSE FALSE 1243803.951 1406105.45 865074.6206 1238569.447 931960.0031 1510337.349 1377918.014 1234278.409 1388017.392 1387317.65 0.896553108 1.013542537 0.623559154 0.892779997 0.671771172 1.0886745 0.993224598 0.889686951 1.000504385 1 20.40386672 -6.272547024 24.953884 0.987448923 0.823583306 0.370118666 0.113762581 876.38739 1968842.692 0.040158229 0.035737757 5.34E-07 6.272547024 -0.163865617 IDSRPPS(ph)PEPPKQEYWGSKR ddPTM_HeLa_A485_30min_R1 1 IDSRPPSPEPPKQEYWGSKR 20 3 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 IDS(0.048)RPPS(0.952)PEPPKQEYWGSKR 78.758 0.0025747 566410000 394100 392530 262310 377100 396150 548510 652090 742550 339820 513600 TRUE FALSE FALSE 481766.1854 438432.9689 359349.3846 397700.0181 356707.915 577229.1354 512765.6444 560438.4482 408018.757 385568.9721 1.249494177 1.13710646 0.931997673 1.031462713 0.925146837 1.497083991 1.329893434 1.453536173 1.058225082 1 18.55662943 -6.251250242 24.97532585 1.299977857 1.051455026 0.271811567 0.169981257 815.9493441 2000033.375 0.055650805 0.05506792 5.61E-07 6.251250242 -0.248522831 IDTHPS(ph)PSHSSTVK ddPTM_HeLa_A485_30min_R1 6 IDTHPSPSHSSTVK 14 0 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477;H0Y594;B7ZBA0 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 IDTHPS(0.928)PS(0.072)HSSTVK;IDTHPS(0.935)PS(0.065)HSSTVK;IDTHPS(0.905)PS(0.032)HS(0.021)S(0.021)T(0.021)VK;IDTHPS(0.998)PS(0.001)HSSTVK;IDTHPS(0.991)PS(0.009)HSSTVK;IDT(0.002)HPS(0.499)PS(0.499)HSSTVK ;;;;; 211.78 1.52E-22 2971100000 2367120 3390830 3417250 1101425 4769580 2464340 3031472 2785740 3411510 2541023 TRUE FALSE FALSE 2893677.678 3787358.072 4681432.979 1161593.059 4294703.868 2593369.032 2383773.242 2102532.897 4096168.765 1907592.73 1.51692635 1.985412301 2.454105064 0.608931372 2.251373577 1.359498278 1.249623782 1.102191712 2.147297324 1 20.86332176 -5.236792579 24.99708485 1.421642976 1.98547423 0.219923977 0.512636753 1246.125945 1263834.392 0.133664852 0.231382122 5.80E-06 5.236792579 0.563831253 IDTHPS(ph)PSHSSTVK ddPTM_HeLa_A486_30min_R1 6 IDTHPSPSHSSTVK 14 0 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477;H0Y594;B7ZBA0 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 IDTHPS(0.916)PS(0.084)HSSTVK;IDTHPS(0.915)PS(0.085)HSSTVK;IDTHPS(0.989)PS(0.009)HSS(0.001)T(0.001)VK;IDTHPS(0.92)PS(0.08)HSSTVK;IDTHPS(0.495)PS(0.495)HS(0.003)S(0.004)T(0.004)VK;IDT(0.001)HPS(0.905)PS(0.094)HSSTVK ;;;;; 176.04 8.23E-13 3064250000 2224000 3047490 2579270 176631 3086660 1840030 1878667 1980210 2725810 674169 TRUE FALSE FALSE 2068109.085 2805995.794 3578032.419 411205.8944 2699502.321 1613025.807 1408604.646 1529359.411 2962085.406 505352.6943 4.092407358 5.552549388 7.08026782 0.813700806 5.3418184 3.191881284 2.787369419 3.02632088 5.861422011 1 18.9469311 -5.245189435 24.9990172 3.308955196 5.572822125 0.311021437 1.644240437 1049.193952 1614084.468 0.427804385 0.738163814 5.69E-06 5.245189435 2.26386693 IDTIEIITDR ddPTM_HeLa_A485_30min_R1 2 IDTIEIITDR 10 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 193.82 9.09E-14 47973000 89242 101415 96374 108362 116033 86705 110397 99187 97968 141422 FALSE FALSE TRUE 109093.575 113274.6021 132026.7531 114281.5417 104480.3471 91244.73973 86809.77909 74861.23273 117629.279 106168.0981 1.027555141 1.066936341 1.243563325 1.07642073 0.984103031 0.85943651 0.817663504 0.705119844 1.107953153 1 16.6959908 -5.933463964 2.558754053 0.875590456 1.113356839 0.413335922 0.113873141 0.251698099 3.345487718 0.038861944 0.044161401 1.17E-06 5.933463964 0.237766382 IDTIEIITDR ddPTM_HeLa_A486_30min_R1 2 IDTIEIITDR 10 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 140.45 0.00057558 88943000 114883 144634 118137 53847 299410 130623 132800 136311 128176 116843 FALSE FALSE TRUE 106830.295 133172.6751 163882.8102 125358.5373 261855.2059 114508.0623 99572.03538 105275.9609 139286.3989 87584.75228 1.219736223 1.520500676 1.871134027 1.431282661 2.989735075 1.307397228 1.136864954 1.201989595 1.590304194 1 16.41839211 -6.486534614 24.99962592 1.245265356 1.810860747 0.266292074 0.465190776 836.8806503 575656.4653 0.166015295 0.146361137 3.26E-07 6.486534614 0.565595391 IDVPQDLEDDLTATPLSHATVPQS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 IDVPQDLEDDLTATPLSHATVPQSPAR 27 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 0 IDVPQDLEDDLTATPLSHAT(0.001)VPQS(0.999)PAR 195.17 3.36E-21 196870000 69704 81111 76925 7167.9 97323 57156 75295 65221 69313 47014 TRUE FALSE FALSE 64818.10955 74683.46896 106712.4201 16687.23345 85115.84184 50104.67384 56455.39461 50371.60206 75321.10665 35241.38839 1.839260952 2.119197693 3.028042452 0.473512373 2.415223853 1.421756523 1.601962839 1.429330806 2.137291125 1 15.10498314 -1.675995123 0.056522341 5.01E-08 4.986277772 0.145741687 0.639978057 661.1915746 3.172466715 65.20215109 286.0282613 0.021086518 1.675995123 4.986277722 IDVTAPDVS(ph)IEEPEGK ddPTM_HeLa_A485_30min_R1 1 IDVTAPDVSIEEPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IDVTAPDVS(1)IEEPEGK 84.508 0.0019503 47441000 74508 64984 49478 86768 93288 71061 98932 111010 71544 134410 TRUE FALSE FALSE 91082.04755 72583.31351 67781.97115 91507.91613 83999.91917 74781.64408 77794.37 83784.62344 85902.22456 100904.0606 0.902659883 0.719329956 0.671746714 0.906880413 0.83247313 0.7411163 0.770973631 0.830339462 0.851325745 1 16.62262471 -8.215107019 1.331934765 0.999482063 0.789484704 0.4291584 0.071154237 0.769200609 2.592360306 0.069610692 0.020891184 6.09E-09 8.215107019 -0.209997358 IDVTAPDVS(ph)IEEPEGK ddPTM_HeLa_A486_30min_R1 2 IDVTAPDVSIEEPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IDVTAPDVS(1)IEEPEGK;IDVTAPDVS(1)IEEPEGK ; 260.25 1.12E-50 103148000 114625.1 137863.6 54381.9 57720.9 126405.1 135460.1 151734.7 160780.1 86792 165084.7 TRUE FALSE FALSE 106590.4724 126938.7862 75440.02808 134377.1723 110550.1937 118748.4101 113769.0732 124173.981 94315.20044 123746.4166 0.861362093 1.025797673 0.609634042 1.085907584 0.893360767 0.959610899 0.919372668 1.003455166 0.762165104 1 16.91702722 IDYLLPGPGPAHS(ph)PQPSKR ddPTM_HeLa_A485_30min_R1 2 IDYLLPGPGPAHSPQPSKR 19 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 IDYLLPGPGPAHS(1)PQPSKR;IDYLLPGPGPAHS(1)PQPSKR ; 110.26 4.60E-05 813440000 909390 713110 615890 1285210 1018030 791780 1066470 846260 864500 1645060 TRUE FALSE FALSE 1111680.668 796502.0113 843733.3403 1355417.768 916671.3587 833236.3765 838609.9722 638713.4081 1037997.22 1234976.817 0.900163187 0.644953007 0.683197716 1.097524868 0.742257948 0.67469799 0.679049162 0.517186557 0.840499357 1 20.23605253 -5.985312011 24.99548154 0.70819387 0.821590577 0.044949268 0.165462245 608.2844009 1035150.3 0.051135047 0.057960685 1.03E-06 5.985312011 0.113396707 IDYLLPGPGPAHS(ph)PQPSKR ddPTM_HeLa_A486_30min_R1 2 IDYLLPGPGPAHSPQPSKR 19 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 IDYLLPGPGPAHS(1)PQPSKR;IDYLLPGPGPAHS(1)PQPSKR ; 140.59 2.61E-07 895600000 904990 1115250 699660 399100 1081620 1135600 1286010 1167560 943100 1186210 TRUE FALSE FALSE 841554.8744 1026873.528 970587.0895 929124.9694 945953.1339 995501.2179 964236.696 901732.0757 1024848.667 889175.2951 0.946444283 1.154860615 1.091558768 1.044928907 1.063854494 1.119578134 1.084416876 1.014121828 1.15258338 1 19.76210834 IDYQGRPSGGFVISGVLS(ph)PDTISSK ddPTM_HeLa_A485_30min_R1 1 IDYQGRPSGGFVISGVLSPDTISSK 25 1 Q03188;H0Y8J2;H0Y9W1 Q03188 CENPC Centromere protein C 1 0 IDYQGRPSGGFVISGVLS(1)PDTISSK 182.79 1.42E-20 129600000 64516 99647 62836 69585 114460 119700 143710 192190 78215 119020 TRUE FALSE FALSE 78867.36162 111299.8498 86081.65122 73386.25235 103063.9605 125967.3069 113005.1845 145055.1012 93912.03307 89350.5044 0.882673938 1.24565441 0.963415392 0.821330029 1.153479336 1.409810809 1.264740308 1.623439086 1.051052075 1 16.44718825 -5.998566285 8.427621963 1.305745921 0.994865087 0.324127347 0.194522269 0.120652079 92.15147381 0.059518201 0.064960368 1.00E-06 5.998566285 -0.310880833 IDYQGRPSGGFVISGVLS(ph)PDTISSK ddPTM_HeLa_A486_30min_R1 2 IDYQGRPSGGFVISGVLSPDTISSK 25 1 Q03188;H0Y8J2;H0Y9W1 Q03188 CENPC Centromere protein C 1 0 IDYQGRPSGGFVISGVLS(1)PDTISSK;IDYQGRPSGGFVISGVLS(1)PDTISSK ; 195.2 1.74E-21 201130000 186063 155920 107687 87925 209491 169757 209672 232091 136026 254115 TRUE FALSE FALSE 173020.9445 143564.3313 149386.2904 204693.8435 183214.6854 148814.1073 157209.8479 179248.9458 147816.8432 190482.95 0.908327725 0.753685993 0.784250193 1.074604543 0.961842965 0.781246339 0.825322413 0.941023571 0.776010888 1 17.53930234 IECDDKGDGSCDVR ddPTM_HeLa_A485_30min_R1 2 IECDDKGDGSCDVR 14 1 Q60FE5;P21333-2;P21333;A0A087WWY3;Q14315-2;Q14315 Q60FE5;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C 0 0 ; ; 114.69 0.00044628 59853000 52319 40060 37226 81258 74598 49865 78110 67718 53316 125889 FALSE FALSE TRUE 63957.18105 44744.66852 50997.4465 85696.91878 67170.76119 52475.85429 61421.1604 51110.05432 64016.03216 94507.18912 0.676744083 0.473452538 0.539614467 0.906776718 0.710747635 0.555257804 0.649909927 0.540805994 0.677366799 1 16.52813646 -8.038139591 22.25837806 1.000000002 0.631683099 0.477653633 0.114849217 1482.253193 865047.2765 0.117466673 0.030329764 9.16E-09 8.038139591 -0.368316903 IECEIK(ac)INHEGEVNR ddPTM_HeLa_A485_30min_R1 2 IECEIKINHEGEVNR 15 1 Q16576;E9PC52;Q16576-2;Q5JP01 Q16576 RBBP7 Histone-binding protein RBBP7 0 1 ; IECEIK(1)INHEGEVNR;IECEIK(1)INHEGEVNR 292.8 4.02E-66 140047000 120836 135615 144367 131108 190141 148645 178257 185661 144253 182366 FALSE TRUE FALSE 147715.5513 151473.9946 197774.3609 138270.0981 171209.8944 156427.8224 140170.9357 140127.3486 173203.2539 136905.5124 1.078959851 1.106412678 1.444604804 1.009967354 1.250569765 1.142596961 1.023851657 1.023533284 1.265129876 1 17.06282101 -6.534980102 16.95725561 1.080535356 1.18128473 0.117633383 0.129068619 11.22376867 15718.2022 0.048147404 0.037440719 2.92E-07 6.534980102 0.100749374 IECEIK(ac)INHEGEVNR ddPTM_HeLa_A486_30min_R1 2 IECEIKINHEGEVNR 15 1 Q16576;E9PC52;Q16576-2;Q5JP01 Q16576 RBBP7 Histone-binding protein RBBP7 0 1 ; IECEIK(1)INHEGEVNR;IECEIK(1)INHEGEVNR 280.4 5.37E-53 144628000 113453 148997 123834 45115 172836 134790 148349 157265 127978 149223 FALSE TRUE FALSE 105500.5306 137189.9351 171785.8412 105030 151157.2972 118160.9802 111230.5111 121459.1926 139071.2361 111856.5895 0.943176714 1.226480583 1.535768629 0.938970162 1.351349061 1.056361371 0.994402847 1.085847451 1.243299449 1 16.77129072 -6.343372241 24.99999999 1.076248618 1.204922235 0.108105281 0.176497169 227.0319761 69270.93975 0.061718603 0.054430693 4.54E-07 6.343372241 0.128673617 IEDEQRT(ph)S(ph)MT(ph)SQKSFQQLTMEK ddPTM_HeLa_A485_30min_R1 1 IEDEQRTSMTSQKSFQQLTMEK 22 2 O75410-8 O75410-8 TACC1 Transforming acidic coiled-coil-containing protein 1 3 0 IEDEQRT(0.707)S(0.727)MT(0.699)S(0.68)QKS(0.183)FQQLT(0.004)MEK 48.867 0.015272 397650000 178580 245000 280590 80556 423680 283580 291560 345880 302310 135120 TRUE FALSE FALSE 218304.5049 273650.6188 384391.9173 84956.5703 381496.9316 298427.8103 229265.8242 261052.3877 362980.844 101437.0707 2.152117598 2.697737789 3.789461926 0.837529808 3.760922205 2.94199949 2.260177888 2.573540283 3.578384525 1 16.63022546 -9.605905417 7.39392964 1.000000067 2.724617174 0.275217209 0.843332751 1.20E-09 0 0.776787674 0.188398684 2.48E-10 9.605905417 1.724617108 IEDLSQQAQLAAAEK(ac)FK ddPTM_HeLa_A485_30min_R1 2 IEDLSQQAQLAAAEKFK 17 1 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha" 0 1 ; IEDLSQQAQLAAAEK(1)FK;IEDLSQQAQLAAAEK(1)FK 285.58 1.53E-55 24573000 21271.4 19193.7 16476.2 30293 32755 31324 46498 49799 30509 58195 FALSE TRUE FALSE 26003.14954 21438.23625 22571.43201 31947.82988 29493.79719 32964.0762 36563.32245 37585.71717 36631.87645 43688.0575 0.595200406 0.490711592 0.516649934 0.731271467 0.675099761 0.754532888 0.836918017 0.860320173 0.838487187 1 15.41495134 -6.123500881 0.363618607 0.986345734 0.434917861 0.883114766 0.052704609 0.583848456 0.151586362 0.060059313 0.124026508 7.52E-07 6.123500881 -0.551427874 IEDLSQQAQLAAAEK(ac)FK ddPTM_HeLa_A486_30min_R1 2 IEDLSQQAQLAAAEKFK 17 1 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha" 0 1 ; IEDLSQQAQLAAAEK(1)FK;IEDLSQQAQLAAAEK(1)FK 314.59 1.63E-82 36015000 33010 33676 22812.9 17210.1 45661 44654 52537 51789 33964 53353 FALSE TRUE FALSE 30696.16946 31007.39111 31646.66583 40065.98255 39933.77161 39145.04349 39391.68692 39997.77525 36908.02687 39993.06153 0.767537375 0.775319266 0.791303907 1.001823342 0.998517495 0.978795871 0.984963026 1.000117863 0.922860753 1 15.28746211 -5.239769302 6.924016598 0.984423585 0.776722797 0.945940374 0.022549513 0.036331524 7.781457641 0.006077279 0.010252951 5.76E-06 5.239769302 -0.207700788 IEDS(ph)EPHIPLIDDTDAEDDAPTKR ddPTM_HeLa_A485_30min_R1 4 IEDSEPHIPLIDDTDAEDDAPTKR 24 1 H0YHH6;A0A0U1RQU3;E7ERY9;P20020-6;P20020;P20020-4;P20020-1 H0YHH6 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 1 0 IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(0.999)EPHIPLIDDT(0.001)DAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR ;;; 165.46 2.99E-14 1310370000 550370 403461 201609 759620 315836 564250 773440 689430 431225 1614920 TRUE FALSE FALSE 672797.9077 450642.2543 276192.5588 801116.1171 284390.2589 593793.2575 608188.2256 520346.2115 517767.9021 1212350.164 0.554953451 0.371709649 0.22781583 0.660795982 0.234577655 0.489786924 0.50166053 0.429204554 0.42707785 1 20.20937502 -13.922842 0.407394852 10 0.419387516 0.643162503 0.126613943 455.1237734 3.324910511 3643.38868 0.074511935 1.19E-14 13.922842 -9.580612483 IEDS(ph)EPHIPLIDDTDAEDDAPTKR ddPTM_HeLa_A486_30min_R1 5 IEDSEPHIPLIDDTDAEDDAPTKR 24 1 H0YHH6;A0A0U1RQU3;E7ERY9;P20020-6;P20020;P20020-4;P20020-1 H0YHH6 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 1 0 IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(0.997)EPHIPLIDDT(0.003)DAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR ;;;; 184.4 1.40E-20 2008780000 780094 910036 551010 347675 1160326 1217881 1210600 1049066 1171489 1901540 TRUE FALSE FALSE 725413.439 837921.4331 764375.8286 809404.9705 1014787.093 1067631.225 907695.0756 810216.5727 1273034.61 1425382.007 0.508925632 0.587857451 0.536260332 0.567851261 0.71194044 0.749014102 0.636808288 0.568420654 0.893118198 1 20.44291719 -13.99999998 0.08272077 2.282523347 0.270996415 0.728961561 0.080443578 131.793707 0.766658585 30.04989539 2.589151291 1.00E-14 13.99999998 -2.011526932 IEDVGS(ph)DEEDDS(ph)GKDK ddPTM_HeLa_A485_30min_R1 1 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 2 0 IEDVGS(1)DEEDDS(1)GKDK 119.38 1.60E-06 0 224580 131290 84357 660000 200850 179990 386730 283570 128570 760850 TRUE FALSE FALSE 274537.0462 146643.2234 115564.1647 696054.1288 180852.6688 189413.9981 304101.9762 214024.0129 154372.8197 571184.0974 0.480645465 0.25673548 0.202323848 1.218616085 0.316627633 0.331616372 0.532406237 0.374702331 0.270268063 1 19.12359629 -10.20126916 4.998196613 1.000049081 0.44661331 0.267122862 0.276880342 0.000175304 2.80E-05 0.270366433 0.065566845 6.29E-11 10.20126916 -0.553435772 IEDVGS(ph)DEEDDS(ph)GKDKK ddPTM_HeLa_A485_30min_R1 3 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 2 0 IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK ;; 181.82 8.90E-18 2692750000 1413810 739320 468130 4482200 1219290 914750 2423630 1588450 633230 5506200 TRUE FALSE FALSE 1728307.157 825777.0428 641310.7675 4727051.236 1097893.206 962644.8955 1905801.651 1198880.147 760313.4527 4133605.674 0.418111279 0.199771606 0.155145608 1.14356608 0.265601824 0.232882614 0.461050667 0.290032539 0.183934684 1 21.97896934 -10.20711964 4.215293959 1.000280854 0.376421813 0.319534627 0.274768595 69659921.86 42169859.22 169899.0792 0.067406919 6.21E-11 10.20711964 -0.623859041 IEDVGS(ph)DEEDDS(ph)GKDKK ddPTM_HeLa_A486_30min_R1 3 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 2 0 IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK;IEDVGS(1)DEEDDS(1)GKDKK ;; 190.88 3.57E-18 3023330000 3227330 2350070 570610 6121370 1420940 4378240 7621700 5919200 1734790 14155500 TRUE FALSE FALSE 3001110.833 2163841.894 791565.4735 14250858.72 1242712.455 3838097.263 5714670.046 4571527.375 1885162.994 10610870.66 0.282833608 0.203926894 0.074599484 1.343043297 0.117116917 0.361713698 0.538567496 0.430834332 0.177663366 1 23.3390397 -10.78317826 2.487188656 1.172718785 0.401785273 0.216684176 0.346228299 41294859.83 28166811.89 43293999.05 0.088380574 1.65E-11 10.78317826 -0.770933512 IEDVGS(ph)DEEDDSGK ddPTM_HeLa_A485_30min_R1 11 IEDVGSDEEDDSGK 14 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK ;;;;;;;;;; 362.97 2.18E-96 31713080000 10492390 7023813 4884552 17828380 7529806 6525154 10778523 7646502 6417673 19526240 TRUE FALSE FALSE 12826385.96 7845186.831 6691551.048 18802299.26 6780112.076 6866800.974 8475603.509 5771185.395 7705641.105 14658707.72 0.875001139 0.535189526 0.456489834 1.282670997 0.462531364 0.46844518 0.578195818 0.393703559 0.525669878 1 23.80525459 -4.248943363 22.91074278 0.617210166 0.875001673 0.06426768 0.269784749 1786.887136 3275961.318 0.067094885 1.038870669 5.64E-05 4.248943363 0.257791507 IEDVGS(ph)DEEDDSGK ddPTM_HeLa_A486_30min_R1 12 IEDVGSDEEDDSGK 14 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK ;;;;;;;;;;; 375.6 1.21E-109 25704190000 19723617 20575412 8069199 9067936 12888332 23754988 25376698 20460337 15768578 32314843 TRUE FALSE FALSE 18341093.3 18944941.42 11193808.95 21110613.28 11271757.22 20824339.1 19027179.75 15801964.91 17135411.04 24222995.98 0.757176912 0.782105625 0.462114966 0.871511241 0.465332911 0.85969296 0.785500678 0.652353859 0.707402629 1 24.52987398 IEDVGS(ph)DEEDDSGKDK ddPTM_HeLa_A485_30min_R1 19 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.999)DEEDDS(0.001)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.999)DEEDDS(0.001)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.999)DEEDDS(0.001)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK ;;;;;;;;;;;;;;;;;; 305.19 4.84E-67 4.69E+11 10214330 7346060 3481968 31631660 8182220 8061650 16383080 12506910 5495564 28344680 TRUE FALSE FALSE 12486472.47 8205117.815 4770092.86 33359617.49 7367569.447 8483745.528 12882701.12 9439570.712 6598473.287 21278872.92 0.586801402 0.385599268 0.224170372 1.567734232 0.346238707 0.398693369 0.605422156 0.443612345 0.310095056 1 24.3429184 -10.45299152 3.770015857 1.003929437 0.54636974 0.126639812 0.361415614 347763339.4 284175158.8 13124825.75 0.090511225 3.52E-11 10.45299152 -0.457559697 IEDVGS(ph)DEEDDSGKDK ddPTM_HeLa_A486_30min_R1 17 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.997)DEEDDS(0.003)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.996)DEEDDS(0.004)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.999)DEEDDS(0.001)GKDK ;;;;;;;;;;;;;;;; 264.96 3.05E-51 5.94E+11 16133604 16839820 4299808 16962293 9541500 19849870 28516370 22641900 9923680 40641600 TRUE FALSE FALSE 15002721.67 15505371.33 5964808.81 39489075.33 8344716.099 17400994.86 21381272.61 17486833.64 10783872.57 30464678.83 0.492462821 0.508962245 0.195794246 1.296224902 0.273914462 0.571185896 0.70183811 0.574003545 0.353979526 1 24.8606342 -10.97350646 2.51160366 1.377686826 0.559618255 0.178903559 0.287491624 33403434.27 15581144.18 73332525.28 0.068387816 1.06E-11 10.97350646 -0.818068571 IEDVGS(ph)DEEDDSGKDKK ddPTM_HeLa_A485_30min_R1 17 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.998)DEEDDS(0.002)GKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.999)DEEDDS(0.001)GKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.998)DEEDDS(0.002)GKDKK;IEDVGS(1)DEEDDSGKDKK ;;;;;;;;;;;;;;;; 226.72 1.51E-34 7.60E+11 13231780 7953006 3647537 46461980 9555600 10535130 24226780 19129290 6666926 45119020 TRUE FALSE FALSE 16175143.81 8883040.87 4996912.723 49000080.32 8604210.912 11086733.12 19050530.54 14437801.63 8004916.896 33871678.67 0.477541842 0.262255702 0.147524803 1.446638674 0.254023752 0.327315727 0.56243243 0.426249959 0.236330681 1 25.01357615 -11.38316387 2.181043252 4.657934079 0.46609947 0.175347466 0.351073924 24399403.85 2356836.413 440661136 0.087991995 4.14E-12 11.38316387 -4.191834609 IEDVGS(ph)DEEDDSGKDKK ddPTM_HeLa_A486_30min_R1 14 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.999)DEEDDS(0.001)GKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(1)DEEDDSGKDKK;IEDVGS(0.999)DEEDDS(0.001)GKDKK ;;;;;;;;;;;;; 240.46 1.05E-42 3.58E+11 11293021 9301670 2030521 12827760 5316814 15708870 23218980 18009800 6441411 35927520 TRUE FALSE FALSE 10501438.55 8564571.793 2816793.11 29863673.56 4649929.611 13770869.34 17409345.62 13909361.69 6999757.692 26931035.14 0.389938169 0.318018663 0.104592827 1.108894382 0.172660634 0.511338285 0.646441755 0.516480767 0.259914172 1 24.68276635 -11.23567731 2.420822336 3.028269966 0.454801949 0.271760599 0.271055667 12621978.13 2394097.775 140295775.2 0.066136533 5.81E-12 11.23567731 -2.573468018 IEDVGS(ph)DEEDDSGKDKKK ddPTM_HeLa_A485_30min_R1 4 IEDVGSDEEDDSGKDKKK 18 3 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDKKK;IEDVGS(1)DEEDDSGKDKKK;IEDVGS(1)DEEDDSGKDKKK;IEDVGS(1)DEEDDSGKDKKK ;;; 196.4 1.99E-18 9374720000 1906880 1156670 313320 3386760 1745120 2510780 6427450 7552900 1041600 4992840 TRUE FALSE FALSE 2331058.877 1291932.495 429230.1063 3571770.123 1571369.725 2642240.558 5054172.8 5700539.433 1250639.566 3748216.874 0.62191142 0.344679227 0.114515814 0.952925149 0.419231271 0.704932678 1.348420588 1.520867021 0.333662541 1 21.837773 -6.568126313 5.478006577 1.091715566 0.49312335 0.35874968 0.351195352 0.202024044 14.21030715 0.135052611 0.104931888 2.70E-07 6.568126313 -0.598592216 IEDVGS(ph)DEEDDSGKDKKK ddPTM_HeLa_A486_30min_R1 3 IEDVGSDEEDDSGKDKKK 18 3 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDKKK;IEDVGS(1)DEEDDSGKDKKK;IEDVGS(1)DEEDDSGKDKKK ;; 238.64 2.81E-45 14041150000 3180550 1577738 264667 3912260 1373303 2895280 6657500 5533850 949832 9582110 TRUE FALSE FALSE 2957609.869 1452712.295 367153.1504 9107938.995 1201050.532 2538089.791 4991723.084 4273913.158 1032164.203 7182687.287 0.411769266 0.20225192 0.051116405 1.268040586 0.167214649 0.353362146 0.694965949 0.595029825 0.143701676 1 22.77609228 -11.50575938 2.278989959 8.943794188 0.441009964 0.200779303 0.339574896 36137806.65 1506377.744 1493425099 0.084087891 3.12E-12 11.50575938 -8.502784224 IEDVTPIPS(ph)DSTRR ddPTM_HeLa_A486_30min_R1 1 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 0 IEDVTPIPS(0.462)DS(0.269)T(0.269)RR 70.335 0.0050193 0 69632 82750 73317 30276 96565 66237 83398 90338 76017 70190 TRUE FALSE FALSE 64751.15638 76192.58863 101707.3059 70484.05806 84452.91727 58065.35239 62530.93831 69770.00946 82606.21477 52613.96714 1.230683788 1.448143768 1.93308567 1.339645381 1.605142548 1.10361099 1.188485524 1.326073916 1.570043455 1 15.68315821 -6.252377781 24.95197938 1.254950066 1.52172102 0.271870785 0.222735475 947.2217541 2608268.507 0.075126098 0.074114015 5.59E-07 6.252377781 0.266770953 IEEAMDGS(ph)ETPQLFTVLPEKR ddPTM_HeLa_A485_30min_R1 1 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 IEEAMDGS(0.536)ET(0.464)PQLFTVLPEKR 110.31 0.00010066 401670000 114720 103020 103310 120440 126240 127400 178130 190710 107860 158650 TRUE FALSE FALSE 140239.0682 115067.2928 141528.6681 127019.3322 113671.1023 134070.467 140071.0703 143938.0735 129506.5126 119101.4747 1.177475498 0.966128195 1.188303238 1.066479928 0.954405498 1.125682678 1.176064953 1.208533092 1.087362797 1 16.86183175 -6.495242435 24.81100658 1.137583121 1.06796883 0.054434003 0.088152361 1404.521524 1260937.887 0.030136837 0.026506475 3.20E-07 6.495242435 -0.069614291 IEEAMDGS(ph)ETPQLFTVLPEKR ddPTM_HeLa_A486_30min_R1 1 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 IEEAMDGS(0.541)ET(0.458)PQLFTVLPEKR 91.416 0.0012225 103340000 124420 140690 87009 62932 157660 141680 166200 165700 100880 144060 TRUE FALSE FALSE 115698.8005 129541.212 120701.215 146508.8764 137884.8127 124200.9621 124615.0021 127973.7272 109624.3596 107986.4383 1.071419729 1.199606303 1.117744199 1.356734037 1.276871567 1.150153334 1.15398752 1.185090732 1.015167843 1 16.72049061 -7.768804265 4.652063221 0.999993667 1.193890397 0.476722076 0.075995051 0.167552295 8.813949186 0.070024742 0.020434326 1.70E-08 7.768804265 0.19389673 IEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_A485_30min_R1 7 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 IEEAMDGS(0.276)ET(0.724)PQLFTVLPEKR;IEEAMDGS(0.026)ET(0.974)PQLFTVLPEKR;IEEAMDGS(0.012)ET(0.988)PQLFTVLPEKR;IEEAMDGSET(1)PQLFTVLPEKR;IEEAMDGS(0.032)ET(0.968)PQLFTVLPEKR;IEEAMDGSET(1)PQLFTVLPEKR;IEEAMDGSET(1)PQLFTVLPEKR ;;;;;; 264.14 3.47E-59 3790789000 2887629 2740071 2324470 2936884 3763777 3348419 4562520 4806690 2321346 3648221 TRUE FALSE FALSE 3529972.109 3060498.468 3184388.182 3097318.536 3389042.146 3523737.041 3587700.33 3627841.741 2787218.85 2738786.645 1.288881744 1.117465091 1.162700347 1.130909026 1.237424665 1.286605164 1.309959772 1.324616413 1.017683818 1 21.38510545 -7.780651409 23.97180637 1.008841236 1.227358336 0.61740885 0.07028143 127.8414598 159506.8165 0.07522456 0.019569109 1.66E-08 7.780651409 0.2185171 IEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_A486_30min_R1 5 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 IEEAMDGS(0.051)ET(0.949)PQLFTVLPEKR;IEEAMDGS(0.065)ET(0.935)PQLFTVLPEKR;IEEAMDGSET(1)PQLFTVLPEKR;IEEAMDGSET(1)PQLFTVLPEKR;IEEAMDGSET(1)PQLFTVLPEKR ;;;; 272.18 1.50E-72 3768195000 1820490 2111690 1449497 904234 2275690 2048670 2595120 2448580 1623960 2392940 TRUE FALSE FALSE 1692883.052 1944351.994 2010781.057 2105102.449 1990251.74 1795925.925 1945793.528 1891091.786 1764726.16 1793732.249 0.943776895 1.083970027 1.121004018 1.173587893 1.109558989 1.001222967 1.084773677 1.054277631 0.983829198 1 20.77453312 -6.253104917 24.67409621 1.031960108 1.09301419 0.193639776 0.061215195 950.7551093 2814701.741 0.021497831 0.021151165 5.58E-07 6.253104917 0.061054082 IEEDNLTYQHLLPES(ph)PEPSASHALSDYETSEK ddPTM_HeLa_A485_30min_R1 2 IEEDNLTYQHLLPESPEPSASHALSDYETSEK 32 0 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 IEEDNLTYQHLLPES(0.997)PEPS(0.001)AS(0.002)HALSDYETSEK;IEEDNLTYQHLLPES(0.952)PEPS(0.04)AS(0.008)HALSDYETSEK ; 185.81 3.90E-21 552470000 184412 192614 170594 168323 271290 228779 303990 323160 183033 296500 TRUE FALSE FALSE 225433.8132 215138.5318 233703.8196 177518.0593 244279.415 240757.5147 239040.0531 243904.5033 219766.0442 222588.0067 1.012785085 0.966532452 1.049938957 0.797518527 1.09745093 1.081628423 1.073912547 1.0957666 0.987322037 1 17.76401633 IEEDNLTYQHLLPES(ph)PEPSASHALSDYETSEK ddPTM_HeLa_A486_30min_R1 1 IEEDNLTYQHLLPESPEPSASHALSDYETSEK 32 0 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;Q5JTU8;B1AMJ5 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 IEEDNLTYQHLLPES(0.999)PEPS(0.001)ASHALSDYETSEK 176 3.11E-15 96632000 55934 63370 40632 8567 72241 61851 76814 62470 51331 50542 TRUE FALSE FALSE 52013.31544 58348.33041 56365.79856 19944.40895 63179.86016 54220.45247 57594.32474 48246.94471 55780.41241 37885.95423 1.372891788 1.540104548 1.487775607 0.5264328 1.667632806 1.431149184 1.520202564 1.273478409 1.472324336 1 15.20937546 -10.14477497 4.878951367 0.999975643 1.362433884 0.119198896 0.298166516 7.90E-05 1.38E-05 0.288686505 0.070012062 7.17E-11 10.14477497 0.362458241 IEEDRCS(ph)NSADITGPSFIR ddPTM_HeLa_A485_30min_R1 2 IEEDRCSNSADITGPSFIR 19 1 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 IEEDRCS(0.972)NS(0.028)ADITGPSFIR;IEEDRCS(0.992)NS(0.008)ADITGPSFIR ; 240.75 6.20E-46 315130000 357610 291620 271990 357820 368280 267630 334770 259650 319420 436560 TRUE FALSE FALSE 437159.1108 325722.4222 372610.4194 377366.8006 331612.7501 281642.693 263243.6547 195970.4304 383524.6641 327733.6263 1.333885435 0.993863297 1.136930695 1.151443643 1.011836209 0.85936465 0.803224429 0.597956434 1.170232876 1 18.32216418 -6.04120511 2.587981069 0.854997078 1.141843566 0.381562697 0.157696758 0.282728937 3.771863015 0.053970681 0.057283612 9.09E-07 6.04120511 0.286846487 IEEDRCS(ph)NSADITGPSFIR ddPTM_HeLa_A486_30min_R1 1 IEEDRCSNSADITGPSFIR 19 1 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 IEEDRCS(0.998)NS(0.002)ADITGPSFIR 286.57 1.99E-70 170260000 102330 151170 97814 43355 117420 135990 130380 123550 102120 95655 TRUE FALSE FALSE 95157.19543 139190.7386 135690.2003 100932.631 102692.0887 119212.9364 97757.54498 95420.36208 110971.8438 71702.36539 1.327113756 1.941229385 1.892408983 1.407661107 1.432199456 1.662608141 1.363379638 1.33078402 1.547673403 1 16.12973309 -9.81283513 0.152083602 0.453787184 1.855639415 0.437481626 0.200800726 22.75043803 0.790029725 6.587923895 1.415113235 1.54E-10 9.81283513 1.401852231 IEEEEEVEQELLSHS(ph)WGR ddPTM_HeLa_A486_30min_R1 2 IEEEEEVEQELLSHSWGR 18 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 IEEEEEVEQELLS(0.001)HS(0.999)WGR;IEEEEEVEQELLS(0.155)HS(0.845)WGR ; 184.2 5.92E-18 119102000 132714 133228 102062 54956 152734 128331 149284 144850 110494 142672 TRUE FALSE FALSE 123411.4339 122670.5281 141583.1397 127940.3453 133576.6775 112498.826 111931.5642 111870.8171 120071.7089 106946.0026 1.153960232 1.147032382 1.323875005 1.196307877 1.249010476 1.051921748 1.04661756 1.046049543 1.122732089 1 16.70652303 -6.268011693 24.79818553 1.055914361 1.215431845 0.685892915 0.054314942 285.3063132 1076494.398 0.019236531 0.017357143 5.39E-07 6.268011693 0.159517484 IEEELGS(ph)K ddPTM_HeLa_A485_30min_R1 2 IEEELGSK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 IEEELGS(1)K;IEEELGS(1)K ; 121.9 0.00068906 218260000 270950 259850 189912 503240 340700 272980 433000 343280 245340 622660 TRUE FALSE FALSE 331221.8927 290237.1971 260168.3517 530730.7269 306778.7117 287272.8107 340486.0127 259090.0418 294577.4876 467442.3212 0.70858345 0.620904835 0.556578512 1.135392973 0.65629212 0.614563119 0.728402195 0.554271682 0.630190024 1 18.83442883 -10.38620617 3.142630737 1.003639112 0.690645357 0.256444686 0.158621164 158576792.5 205279049.1 5237908.877 0.040144114 4.11E-11 10.38620617 -0.312993755 IEEELGS(ph)K ddPTM_HeLa_A486_30min_R1 3 IEEELGSK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 IEEELGS(1)K;IEEELGS(1)K;IEEELGS(1)K ;; 172.1 2.04E-05 355300000 966380 910180 400738 767620 717190 1051090 1253350 1170120 728420 1763210 TRUE FALSE FALSE 898641.7524 838054.022 555914.4857 1787058.153 627233.3427 921417.2025 939748.5734 903709.2195 791560.0321 1321690.739 0.679918324 0.634077244 0.420608596 1.352100079 0.474568917 0.697150381 0.711020018 0.683752403 0.598899583 1 20.33395321 -10.83789398 2.537828385 1.117118486 0.69792836 0.128313915 0.238603712 83562931.47 53579614.2 59539861.47 0.057160807 1.45E-11 10.83789398 -0.419190126 IEEELGS(ph)KAK ddPTM_HeLa_A485_30min_R1 1 IEEELGSKAK 10 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 IEEELGS(1)KAK 91.62 0.00037258 0 87983 86466 51023 211160 164270 128930 259310 305080 97877 308710 TRUE FALSE FALSE 107554.5148 96577.44655 69898.53094 222695.1361 147914.702 135680.5754 203906.3001 230258.6517 117520.0161 231754.2784 0.464088584 0.416723468 0.301606216 0.960910572 0.638239359 0.585450143 0.879838342 0.993546498 0.507088874 1 17.82223645 -5.253838705 24.95438402 0.783012323 0.39639781 0.543544532 0.168088016 450.8249239 1480135.877 0.045505936 0.076896484 5.57E-06 5.253838705 -0.386614513 IEEELGS(ph)KAK ddPTM_HeLa_A486_30min_R1 1 IEEELGSKAK 10 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 IEEELGS(1)KAK 51.875 0.0099088 0 88503 87964 44602 111900 92893 113360 161590 169150 65059 202390 TRUE FALSE FALSE 82299.39673 80993.41228 61873.08888 260508.8551 81241.49375 99374.79576 121158.4729 130638.2375 70698.3665 151710.2267 0.542477581 0.533869167 0.407837298 1.717147623 0.535504399 0.655030303 0.798617704 0.8611037 0.466009234 1 17.21095881 IEEELGSK ddPTM_HeLa_A485_30min_R1 6 IEEELGSK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;;;; ;;;;; 175.38 4.31E-06 964390000 1433330 1358450 1088690 1755660 1938180 1530140 2222830 2241770 1347870 2340820 FALSE FALSE TRUE 1752169.314 1517308.911 1491441.735 1851567.26 1745207.994 1610255.764 1747904.212 1691972.393 1618375.146 1757296.654 0.997082257 0.863433563 0.848713694 1.053645243 0.993120877 0.916325517 0.994655176 0.962826845 0.920945899 1 20.74492633 -5.247586047 24.98483377 0.974645299 0.899112217 0.294968545 0.05240344 1016.566683 1833400.533 0.014361657 0.024715492 5.65E-06 5.247586047 -0.075533082 IEEELGSK ddPTM_HeLa_A486_30min_R1 7 IEEELGSK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;;;;; ;;;;;; 155.1 0.00030762 539539000 1321410 1284429 802383 611740 2858031 1356927 1667172 1579598 1018376 1495488 FALSE FALSE TRUE 1228785.983 1182646.168 1113087.186 1424161.636 2499550.102 1189523.143 1250027.932 1219958.018 1106649.652 1121008.071 1.096143743 1.054984526 0.992934141 1.270429422 2.229734261 1.06111916 1.115092714 1.08826872 0.987191511 1 20.09636523 IEEFLEQTLAPPRYPHLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 IEEFLEQTLAPPRYPHLSPK 20 1 O15247 O15247 CLIC2 Chloride intracellular channel protein 2 1 0 IEEFLEQTLAPPRY(0.025)PHLS(0.975)PK 93.397 0.00028445 17055000 25011 24046 16612 19293 23733 31648 36561 38033 18149 51050 TRUE FALSE FALSE 23257.85806 22140.50739 23044.61128 44915.07901 20756.18584 27743.59153 27413.0511 29373.71615 19722.16993 38266.74772 0.60778246 0.578583462 0.602209821 1.173736513 0.542407889 0.725005212 0.716367414 0.767604197 0.515386624 1 15.22380367 -11.43445697 2.147759205 3.573690627 0.699798984 0.208628971 0.179328749 12621108.07 1028401.623 158044794.9 0.045077758 3.68E-12 11.43445697 -2.873891643 IEEPVSMEMDNHMSDKDESCYDNAEAAFS(ph)DDEEDLNSK ddPTM_HeLa_A485_30min_R1 3 IEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSK 38 1 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK;IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK;IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK ;; 261.79 3.27E-65 316040000 97721 81550 79513.7 76113 182569 73322 148365 122670 92800 180786 TRUE FALSE FALSE 119458.6993 91086.56311 108929.1265 80270.86046 164391.7893 77161.02654 116665.6057 92584.99016 111424.1088 135719.3773 0.880188973 0.67113897 0.802605557 0.591447309 1.211262478 0.568533603 0.859609055 0.682179597 0.820988948 1 17.05026719 -11.08409717 1.527313652 1.29052329 0.783841327 0.116926999 0.174886797 257319.7656 54584.31803 259845.0771 0.045214812 8.24E-12 11.08409717 -0.506681962 IEEPVSMEMDNHMSDKDESCYDNAEAAFS(ph)DDEEDLNSK ddPTM_HeLa_A486_30min_R1 1 IEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSK 38 1 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 IEEPVSMEMDNHMSDKDESCYDNAEAAFS(1)DDEEDLNSK 216.39 9.21E-40 216990000 65990 66738 36682 8231.4 73453 69167 90988 83766 64342 33168 TRUE FALSE FALSE 61364.44177 61449.43782 50886.25278 19163.11519 64239.83982 60633.87878 68221.84003 64694.3104 69919.21637 24862.51691 2.468150831 2.471569473 2.046705607 0.770763284 2.58380276 2.438766718 2.743963544 2.602082107 2.812234039 1 14.60168473 IEESPFSVEESSTTPCPLLT(ph)GGRPLPTLEVKPPDRPSSK ddPTM_HeLa_A485_30min_R1 1 IEESPFSVEESSTTPCPLLTGGRPLPTLEVKPPDRPSSK 39 3 Q12872-2;Q12872;H0YFR9 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 IEESPFSVEES(0.002)S(0.01)T(0.01)T(0.008)PCPLLT(0.264)GGRPLPT(0.264)LEVKPPDRPS(0.221)S(0.221)K 71.288 0.00050211 672850000 162230 103600 51478 335120 104470 123850 223330 178580 89208 381460 TRUE FALSE FALSE 198317.5038 115715.1188 70521.85438 353426.757 94068.59998 130334.5945 175613.7211 134782.975 107111.2273 286369.0423 0.692524242 0.404076914 0.246262144 1.234165377 0.328487323 0.455128087 0.613242687 0.470661821 0.374032146 1 18.12751601 -10.1491335 4.620905015 1.000050624 0.535522546 0.217395189 0.26445306 351948694.3 21.61740392 203521.4853 0.062663703 7.09E-11 10.1491335 -0.464528077 IEEVLSPEGS(ph)PSKS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 IEEVLSPEGSPSKSPSK 17 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 2 0 IEEVLS(0.002)PEGS(0.993)PS(0.049)KS(0.934)PS(0.022)K;IEEVLS(0.001)PEGS(0.993)PS(0.006)KS(0.99)PS(0.009)K ; 109.37 0.00018677 467740000 799210 456980 270285 1570100 649590 622100 1241310 898220 422140 2137990 TRUE FALSE FALSE 976991.5073 510419.8358 370274.669 1655870.587 584914.5388 654672.1941 976093.9779 677930.1366 506859.6259 1605028.44 0.608706664 0.318012954 0.230696641 1.031676789 0.364426277 0.40788822 0.608147466 0.422378894 0.315794794 1 20.61416743 -10.43683851 2.995100755 1.010672589 0.479600391 0.340146583 0.217843752 74082194.57 88377265.32 6695895.421 0.055596309 3.66E-11 10.43683851 -0.531072198 IEEVLSPEGS(ph)PSKS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 IEEVLSPEGSPSKSPSK 17 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 2 0 IEEVLSPEGS(1)PSKS(1)PSK 188.19 8.79E-18 520480000 858190 715130 232740 714230 486570 998590 1446900 1127100 599850 2061300 TRUE FALSE FALSE 798035.3127 658460.4943 322863.161 1662763.535 425539.8535 875394.1187 1084870.316 870483.9344 651845.481 1545137.063 0.516481891 0.426150217 0.208954383 1.076126885 0.275405894 0.566547874 0.702119147 0.563370043 0.421869034 1 20.55930339 -14 0.288109333 4.562092065 0.505144053 0.272429245 0.229019308 330.9787489 3.13568766 708.5037164 0.24435262 1.00E-14 14 -4.056948013 IEEVLSPEGS(ph)PSKSPSKK ddPTM_HeLa_A485_30min_R1 1 IEEVLSPEGSPSKSPSKK 18 2 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 IEEVLSPEGS(0.418)PS(0.29)KS(0.29)PS(0.003)KK 90.464 0.00033402 906460000 465260 274550 130850 930930 339640 413850 798160 606830 271490 1149900 TRUE FALSE FALSE 568755.4819 306656.2342 179256.8601 981784.3487 305824.2491 435518.5461 627626.5956 458003.991 325975.5527 863251.0923 0.658852896 0.355234111 0.20765321 1.137310288 0.35427033 0.504509696 0.727049871 0.530557094 0.377613832 1 19.71942073 -10.52963234 3.444271005 1.011021072 0.540462899 0.237711199 0.24752938 151809110.1 205833173.3 15662996.15 0.060701396 2.95E-11 10.52963234 -0.470558173 IEEVLSPEGSPS(ph)KSPSKK ddPTM_HeLa_A486_30min_R1 1 IEEVLSPEGSPSKSPSKK 18 2 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 IEEVLS(0.001)PEGS(0.106)PS(0.816)KS(0.064)PS(0.013)KK 104.06 0.00011784 463650000 256420 208660 54489 149550 135300 298660 388540 319750 147810 513910 TRUE FALSE FALSE 238446.2822 192125.0217 75588.60007 348159.9578 118329.4124 261814.3658 291323.1824 246949.9051 160622.2898 385223.591 0.618981515 0.498736386 0.19622007 0.903786699 0.307170732 0.679642607 0.756244397 0.641056028 0.416958602 1 18.55533653 -14 0.199664429 2.955052034 0.490477173 0.296973504 0.201510943 176.4449646 1.745082905 137.9654471 0.475891965 1.00E-14 14 -2.46457486 IEEVLSPEGSPSKS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 IEEVLSPEGSPSKSPSK 17 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 IEEVLSPEGSPS(0.002)KS(0.993)PS(0.005)K 231.37 9.66E-33 0 104220 98026 30479 52412 73496 135460 159060 131500 72677 203390 TRUE FALSE FALSE 96914.71619 90258.06276 42281.28506 122017.7848 64277.44636 118748.3225 119261.5056 101560.3206 78976.70088 152459.8202 0.635673819 0.592012129 0.277327397 0.800327487 0.421602533 0.77888274 0.782248762 0.666144828 0.51801649 1 17.21806955 -6.277128299 24.84550794 0.73026701 0.547249834 0.260386704 0.170146867 1190.573848 1885427.559 0.058138601 0.051451412 5.28E-07 6.277128299 -0.183017175 IEEVPELPLVVEDKVEGYKK ddPTM_HeLa_A485_30min_R1 1 IEEVPELPLVVEDKVEGYKK 20 2 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 84.499 0.00093784 37658000 34205 23679 17841 45245 35093 39925 63210 65281 28884 74980 FALSE FALSE TRUE 41813.78424 26448.05307 24441.12833 47716.61978 31599.0177 42015.41126 49704.66712 49270.73239 34680.75386 56288.8659 0.742842897 0.469862959 0.434208932 0.847709738 0.561372435 0.746424903 0.883028399 0.87531933 0.616121027 1 15.78056196 -6.13563221 0.916877108 0.84198903 0.565836284 0.351063414 0.145622053 0.650586693 1.185437403 0.083664209 0.087878681 7.32E-07 6.13563221 -0.276152747 IEHAPS(ph)PSSGGTLK ddPTM_HeLa_A486_30min_R1 1 IEHAPSPSSGGTLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 IEHAPS(0.99)PS(0.009)S(0.001)GGTLK 132.05 5.00E-05 0 267500 355780 198500 106650 305820 357460 372630 311700 278060 335560 TRUE FALSE FALSE 248749.6314 327586.6971 275364.516 248286.5898 267461.2039 313360.2196 279394.0327 240732.7144 302162.4647 251533.5919 0.988932053 1.302357648 1.094742511 0.987091179 1.063322008 1.245798691 1.110762307 0.9570599 1.201280761 1 17.94039156 -14 0.254263619 0.342347084 1.115270482 0.069222203 0.109675127 546.5681836 5.406737866 187.2939645 0.154177623 1.00E-14 14 0.772923398 IEHAPS(ph)PSSGGTLKNDK ddPTM_HeLa_A485_30min_R1 4 IEHAPSPSSGGTLKNDK 17 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 IEHAPS(0.826)PS(0.168)S(0.006)GGTLKNDK;IEHAPS(0.998)PS(0.002)SGGTLKNDK;IEHAPS(0.978)PS(0.019)S(0.003)GGTLKNDK;IEHAPS(0.832)PS(0.168)S(0.001)GGTLKNDK ;;; 138.04 2.40E-06 2195190000 2036950 1913820 1272280 2508710 2591770 2226430 3349630 3580470 1871900 3534150 TRUE FALSE FALSE 2490062.5 2137624.601 1742949.316 2645754.475 2333724.279 2343002.432 2633954.187 2702354.119 2247573.16 2653151.446 0.938530103 0.805692643 0.656935479 0.997212006 0.879604623 0.883101655 0.992764356 1.018544992 0.847133383 1 21.3392756 -5.287285574 24.99907601 0.942879114 0.80091668 0.38392887 0.084180666 779.370186 753824.2282 0.023990396 0.035595955 5.16E-06 5.287285574 -0.141962434 IEHAPS(ph)PSSGGTLKNDK ddPTM_HeLa_A486_30min_R1 2 IEHAPSPSSGGTLKNDK 17 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 IEHAPS(0.972)PS(0.021)S(0.006)GGTLKNDK;IEHAPS(0.982)PS(0.016)S(0.002)GGTLKNDK ; 147.9 3.61E-08 830810000 1777010 1420920 616830 790690 1439560 1504730 2027210 2031520 920230 2164600 TRUE FALSE FALSE 1652450.775 1308321.124 855683.0953 1840766.279 1258996.961 1319091.712 1519980.616 1568987.244 999996.2773 1622570.071 1.018415664 0.806326425 0.5273628 1.134475677 0.775927637 0.812964405 0.936773483 0.966976571 0.616303909 1 20.62984935 -5.264535893 24.9996999 0.884287784 0.786264124 0.075160501 0.171914672 827.4257949 6680234.184 0.047219781 0.073492452 5.44E-06 5.264535893 -0.098023659 IEHAPSPS(ph)SGGTLKNDK ddPTM_HeLa_A486_30min_R1 1 IEHAPSPSSGGTLKNDK 17 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 IEHAPS(0.428)PS(0.562)S(0.01)GGTLKNDK 157.85 6.22E-09 596870000 775050 658970 272340 354130 674240 657390 994300 997250 431710 1025700 TRUE FALSE FALSE 720722.9974 606750.8173 377797.3415 824432.5367 589670.5322 576287.9057 745515.6234 770197.9448 469130.9704 768858.0438 0.937394104 0.789158444 0.491374636 1.072281864 0.766943309 0.749537461 0.969640143 1.001742716 0.610165913 1 19.55235773 -6.037077681 0.95908665 0.880080152 0.782562891 0.033109965 0.176574672 2.157364583 4.298072428 0.094770915 0.109412378 9.18E-07 6.037077681 -0.09751726 IEKVIY(ph)T(ph)GKEGK ddPTM_HeLa_A485_30min_R1 1 IEKVIYTGKEGK 12 2 A0A5H1ZRP3;O43151-2;O43151 A0A5H1ZRP3 TET3 Methylcytosine dioxygenase TET3 2 0 IEKVIY(1)T(1)GKEGK 65.472 0.017348 189490000 67432 233960 247250 29061 358400 252200 183350 418590 229890 54989 TRUE FALSE FALSE 82432.01576 261319.5868 338718.0639 30648.52884 322716.4376 265404.802 144175.7747 315930.1462 276026.8143 41281.2543 1.996838932 6.330224003 8.205130142 0.742432113 7.817505623 6.429184542 3.49252408 7.653114024 6.686492914 1 15.33319919 IELNDS(ph)VNENSDTVGQIVHYIMK ddPTM_HeLa_A485_30min_R1 1 IELNDSVNENSDTVGQIVHYIMK 23 0 D6RBN9;Q8IUW5 D6RBN9 RELL1 RELT-like protein 1 1 0 IELNDS(0.971)VNENS(0.019)DT(0.01)VGQIVHYIMK 136.89 7.67E-07 56324000 54719 50958 29753 53466 36116 58821 70792 63076 49112 125690 TRUE FALSE FALSE 66891.05277 56917.09482 40759.87283 56386.7122 32520.16423 61900.77661 55666.71088 47606.5121 58968.32792 94357.79615 0.708908596 0.603205004 0.431971437 0.597584031 0.344647348 0.656021856 0.589953487 0.504531836 0.624943887 1 16.5258541 -8.147042005 4.800758569 0.999991928 0.551538661 0.635493577 0.10064789 0.915143596 29.31599169 0.09598732 0.025039389 7.13E-09 8.147042005 -0.448453267 IENHEGVR ddPTM_HeLa_A485_30min_R1 8 IENHEGVR 8 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;;; ;;;;;;; 161.28 8.32E-05 6776110000 1967600 2579260 2274100 2097250 2611900 2273190 2970210 3167730 2223690 2825210 FALSE FALSE TRUE 2405285.832 2880882.02 3115384.223 2211817.457 2351850.065 2392210.713 2335600.369 2390839.251 2669964.186 2120937.141 1.134067477 1.358306177 1.468871549 1.042849132 1.108873063 1.127902693 1.101211499 1.127256063 1.258860592 1 21.01627043 -5.274027975 24.88786538 1.115254266 1.324204186 0.487324952 0.09896179 591.6559936 1169713.074 0.027814875 0.04158899 5.32E-06 5.274027975 0.20894992 IENHEGVR ddPTM_HeLa_A486_30min_R1 8 IENHEGVR 8 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;;; ;;;;;;; 156.62 0.0002116 4590072000 2065716 1945617 1836604 852124 2584006 2148235 2251467 2033317 1932460 2271956 FALSE FALSE TRUE 1920919.976 1791439.223 2547786.255 1983787.736 2259895.873 1883207.607 1688126.143 1570375.106 2099967.189 1703043.43 1.127933641 1.051904603 1.496019544 1.164848589 1.326974893 1.105789538 0.991240807 0.922099272 1.233067315 1 20.6996838 -6.480582645 5.452970498 1.031756595 1.233697753 0.324740696 0.134834697 0.239721943 17.92509905 0.049280728 0.042047357 3.31E-07 6.480582645 0.201941158 IEPEPFENCLLRPGS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 IEPEPFENCLLRPGSPAR 18 1 A0A2R8Y5T7;A0A2R8Y430;P48637-2;P48637 A0A2R8Y5T7 GSS Glutathione synthetase 1 0 IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR ;;; 258.31 4.40E-58 2792010000 885070 908250 1017910 940700 1309950 1097140 1381450 1339840 898320 1331010 TRUE FALSE FALSE 1081950.768 1014461.937 1394477.268 992088.059 1179526.778 1154584.554 1086291.922 1011242.139 1078604.584 999213.7024 1.082802173 1.015260233 1.395574605 0.992868749 1.180454967 1.155493115 1.087146743 1.012037902 1.079453356 1 19.93043374 -7.000302537 3.901046471 1.035255028 1.138348595 0.169402438 0.105575629 0.413439399 14.17047857 0.04896884 0.029512711 9.99E-08 7.000302537 0.103093567 IEPEPFENCLLRPGS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 IEPEPFENCLLRPGSPAR 18 1 A0A2R8Y5T7;A0A2R8Y430;P48637-2;P48637 A0A2R8Y5T7 GSS Glutathione synthetase 1 0 IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR ;;; 198.31 1.95E-25 2823570000 722520 1093830 926380 368028 1243080 1043750 1195970 1209830 919260 1013160 TRUE FALSE FALSE 671875.0791 1007150.927 1285099.145 856787.7831 1087161.315 914982.7371 896725.6563 934378.1194 998942.197 759458.1414 0.884676906 1.326144092 1.692126366 1.12815669 1.431496031 1.204783631 1.180744017 1.230322079 1.315335425 1 19.53461093 -6.469464197 24.42687528 1.199646451 1.308525421 0.0572842 0.207196346 823.1295656 376423.1982 0.073365802 0.064701965 3.39E-07 6.469464197 0.10887897 IEPIPGES(ph)PK ddPTM_HeLa_A485_30min_R1 2 IEPIPGESPK 10 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 IEPIPGES(1)PK;IEPIPGES(1)PK ; 122.34 0.00015746 353800000 1011840 901040 612090 1935870 1330370 1042090 1688130 1600770 796050 2656600 TRUE FALSE FALSE 1236920.317 1006408.79 838527.5622 2041621.676 1197913.692 1096652.221 1327447.235 1208178.648 955809.9332 1994358.511 0.620209611 0.504627821 0.420449762 1.02369843 0.600651129 0.549877173 0.665601108 0.605798125 0.479256828 1 20.92749335 -10.50191148 3.145335861 1.010510596 0.611212162 0.363482167 0.155643692 252720886.6 309689843 23044104.27 0.039543132 3.15E-11 10.50191148 -0.399298434 IEPIPGES(ph)PK ddPTM_HeLa_A486_30min_R1 4 IEPIPGESPK 10 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 IEPIPGES(1)PK;IEPIPGES(1)PK;IEPIPGES(1)PK;IEPIPGES(1)PK ;;; 132.5 6.61E-05 648800000 1640120 1670620 811970 1528740 1430610 2042820 2802980 2394190 1281980 3667710 TRUE FALSE FALSE 1525156.058 1538233.987 1126386.529 3558983.978 1251169.554 1790797.638 2101644.757 1849085.202 1393103.059 2749291.543 0.554745117 0.559501953 0.409700649 1.294509484 0.455087987 0.651366947 0.76443139 0.672567886 0.50671347 1 21.39062847 -11.47532569 2.051383644 4.217957286 0.659207091 0.161580684 0.237265071 9636892.454 662443.484 144186983.4 0.058468203 3.35E-12 11.47532569 -3.558750195 IEPSELPLPGGGNRS(ph)SSVPHPFQVTLLR ddPTM_HeLa_A485_30min_R1 1 IEPSELPLPGGGNRSSSVPHPFQVTLLR 28 1 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 IEPSELPLPGGGNRS(0.455)S(0.455)S(0.09)VPHPFQVTLLR 83.054 0.0023921 207600000 25935 38196 38925 26101 68041 63053 78061 124810 35593 38418 TRUE FALSE FALSE 31704.15128 42662.68994 53324.9773 27526.83154 61266.59913 66354.35758 61382.62965 94200.15181 42736.18862 28841.09963 1.09926985 1.479232432 1.848923168 0.954430722 2.124280971 2.300687506 2.128304067 3.266177539 1.481780833 1 14.81583855 -5.845236623 8.274197532 2.18415106 1.392344147 0.231370283 0.598214257 0.326728065 28.49363023 0.177665369 0.201903633 1.43E-06 5.845236623 -0.791806913 IEPSINHILS(ph)TR ddPTM_HeLa_A485_30min_R1 2 IEPSINHILSTR 12 0 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 IEPSINHILS(0.973)T(0.027)R;IEPSINHILS(0.976)T(0.024)R ; 105.39 0.00041461 116202000 180329 230310 226350 117279 255600 184882 235040 194935 187916 191243 TRUE FALSE FALSE 220442.5639 257242.7511 310086.2842 123685.6548 230151.5665 194562.1356 184821.7839 147126.8856 225629.0175 143569.6397 1.535439975 1.79176288 2.159831876 0.861502857 1.603065711 1.355176039 1.287331948 1.024777146 1.571564978 1 17.13139117 -5.257081039 24.99992681 1.265858622 1.825286694 0.504134574 0.265511593 313.4555091 1798009.812 0.07064522 0.117133905 5.53E-06 5.257081039 0.559428072 IEPSINHILS(ph)TR ddPTM_HeLa_A486_30min_R1 2 IEPSINHILSTR 12 0 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 IEPSINHILS(0.972)T(0.028)R;IEPSINHILS(0.994)T(0.006)R ; 133.86 1.46E-05 159680000 202178 264660 251830 19611.9 264470 231280 242470 222098 217223 153172 TRUE FALSE FALSE 188006.3662 243687.3777 349345.3202 45657.49433 231297.7065 202747.0251 181801.4414 171531.1338 236052.0645 114816.7342 1.637447429 2.12240297 3.042634182 0.3976554 2.014494735 1.765831666 1.583405439 1.493955867 2.055902967 1 16.8089734 -10.5767504 0.108757209 4.09E-10 2.361549541 0.123932779 0.62478413 133.786998 2.369567579 49.89982017 11.00533364 2.65E-11 10.5767504 2.361549541 IERIS(ph)SWK ddPTM_HeLa_A485_30min_R1 1 IERISSWK 8 1 V9GY77;J3KTL9;A0A669KAW7;A0A669KAY3;Q8TDR4 V9GY77 TCP10L T-complex protein 10A homolog 2 1 0 IERIS(0.5)S(0.5)WK 46.891 0.030108 117790000 38435 20389 29467 52626 39627 34049 36608 25064 34303 81397 TRUE FALSE FALSE 46984.73315 22773.31619 40368.06952 55500.82512 35681.59674 35831.75299 28786.40174 18917.0147 41187.29745 61106.2259 0.768902554 0.372684057 0.66062122 0.908267927 0.583927353 0.586384652 0.471087869 0.309575897 0.67402784 1 15.89903176 -8.022218134 24.24194545 1.000000013 0.579716609 0.360278031 0.166728439 1451.677355 1583907.456 0.168578256 0.043526718 9.50E-09 8.022218134 -0.420283404 IERPGEGS(ph)PMVDNPMR ddPTM_HeLa_A485_30min_R1 6 IERPGEGSPMVDNPMR 16 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR ;;;;; 157.85 5.32E-09 3666930000 1406500 1709100 1620690 1645870 2073830 1743180 1951350 1973390 1641450 2123320 TRUE FALSE FALSE 1719371.073 1908964.378 2220250.674 1735779.711 1867352.204 1834450.209 1534428.131 1489413.008 1970873.959 1594015.401 1.078641443 1.197582142 1.392866513 1.088935345 1.171476889 1.150835938 0.962618134 0.934378054 1.236420901 1 20.60423414 -6.612336042 5.420081068 1.028652753 1.189839364 0.300977526 0.110257696 0.259543228 12.29547197 0.043392253 0.033332011 2.44E-07 6.612336042 0.161186611 IERPGEGS(ph)PMVDNPMR ddPTM_HeLa_A486_30min_R1 7 IERPGEGSPMVDNPMR 16 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR;IERPGEGS(1)PMVDNPMR ;;;;;; 143.04 4.34E-08 3370520000 1703034 1814410 1595585 597313 2039410 1730943 1981220 1908570 1650640 1765360 TRUE FALSE FALSE 1583660.111 1670629.544 2213438.243 1390574.851 1783608.181 1517396.852 1485497.801 1474030.275 1793718.804 1323302.365 1.196748493 1.262470005 1.6726625 1.050836821 1.347846288 1.146674329 1.122568688 1.113902849 1.355486736 1 20.33571131 -5.327767612 24.99991042 1.17262253 1.365826006 0.277975653 0.15773985 259.862876 97944.60624 0.043563982 0.064615834 4.70E-06 5.327767612 0.193203476 IERS(ph)PLLDQVQTFLPQMAR ddPTM_HeLa_A485_30min_R1 1 IERSPLLDQVQTFLPQMAR 19 1 Q8N5I9;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 IERS(1)PLLDQVQTFLPQMAR 131.43 1.69E-06 41300000 13400 14694 13788 14217 24164 15346 17428 19867 15572 18360 TRUE FALSE FALSE 16380.78377 16412.33548 18888.75497 14993.63871 21758.14732 16149.49283 13704.36543 14994.5871 18697.15757 13783.18989 1.188461009 1.190750154 1.370419701 1.087820659 1.578600272 1.171680355 0.994281116 1.087889467 1.356518898 1 13.75062219 -6.512103522 24.99046327 1.11213708 1.282371324 0.222599971 0.154059348 827.9186929 1920160.077 0.055382567 0.045811283 3.08E-07 6.512103522 0.170234243 IERS(ph)PLLDQVQTFLPQMAR ddPTM_HeLa_A486_30min_R1 1 IERSPLLDQVQTFLPQMAR 19 1 Q8N5I9;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 IERS(1)PLLDQVQTFLPQMAR 80.683 0.0011462 52156000 31753 40919 29195 13662 32560 34482 35337 34139 28562 34179 TRUE FALSE FALSE 29527.27867 37676.42942 40500.08587 31805.82644 28476.02119 30227.96143 26495.30884 26366.29495 31037.77716 25620.35593 1.152492914 1.470566198 1.580777643 1.241427969 1.111460796 1.179841588 1.034150693 1.029115092 1.211449881 1 14.6450029 -5.546443921 3.904252604 1.09877927 1.410449951 0.575450196 0.117868875 0.153788442 5.194888871 0.035680555 0.049261766 2.84E-06 5.546443921 0.311670681 IES(ph)DEEEDFENVGK ddPTM_HeLa_A485_30min_R1 6 IESDEEEDFENVGK 14 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK ;;;;; 384.18 4.20E-125 10336580000 3029010 2255720 1569670 5138155 3392819 2808866 4887850 4352952 2275916 6764915 TRUE FALSE FALSE 3702802.825 2519506.832 2150356.252 5418839.397 3055018.027 2955933.88 3843520.917 3285383.697 2732671.465 5078546.19 0.729106852 0.49610789 0.42341965 1.067006028 0.601553656 0.582043319 0.756815194 0.64691421 0.538081444 1 22.27598413 -10.59626424 2.832732737 1.025092678 0.649911902 0.279303642 0.169139524 61929172.64 63492188.35 11640409.82 0.044117609 2.53E-11 10.59626424 -0.375180776 IES(ph)DEEEDFENVGK ddPTM_HeLa_A486_30min_R1 7 IESDEEEDFENVGK 14 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK ;;;;;; 366.94 2.85E-109 12385690000 3614695 3485625 1534330 2145749 3227972 4491036 5967970 5242600 2726893 6412140 TRUE FALSE FALSE 3361323.547 3209411.381 2128463.667 4995412.112 2823089.652 3936977.64 4474720.783 4048974.425 2963262.281 4806498.408 0.699328963 0.667723384 0.442830411 1.039303811 0.587348505 0.819094756 0.930973113 0.842395874 0.616511653 1 22.19655483 -5.252656212 24.99916027 0.820278977 0.609737183 0.325537961 0.151009937 822.5856286 2341285.992 0.040015651 0.067997442 5.59E-06 5.252656212 -0.210541794 IES(ph)DVQEPTEPEDDLDIMLGNK ddPTM_HeLa_A485_30min_R1 2 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(0.999)DVQEPT(0.001)EPEDDLDIMLGNK;IES(1)DVQEPTEPEDDLDIMLGNK ; 159.75 1.70E-11 80342000 123283 83421 59699 151329 113056 88269 158335 143920 73748 203781 TRUE FALSE FALSE 150706.878 93176.36028 81784.14438 159595.7201 101799.7477 92890.62835 124505.4338 108623.3943 88548.54714 152982.147 0.985127225 0.609066889 0.534599272 1.043231012 0.665435475 0.607199142 0.813855971 0.710039678 0.578816214 1 17.22300377 -10.23022009 4.536785947 1.000074123 0.72428059 0.200842578 0.162966496 35761981.69 80641483.84 20467.36269 0.038436903 5.89E-11 10.23022009 -0.275793532 IES(ph)DVQEPTEPEDDLDIMLGNK ddPTM_HeLa_A486_30min_R1 2 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(1)DVQEPTEPEDDLDIMLGNK;IES(1)DVQEPTEPEDDLDIMLGNK ; 149.53 9.81E-10 70890000 155850 142588 72153 85556 120552 174938 223770 202195 118866 235490 TRUE FALSE FALSE 144925.7198 131288.8076 100092.5739 199178.6918 105431.2441 153355.9282 167780.3792 156159.6124 129169.4006 176521.7712 0.821007623 0.743754193 0.567026794 1.12835199 0.597270486 0.868764953 0.950479808 0.88464789 0.731747703 1 17.4294866 -13.9999993 0.048885201 1.752194261 0.430031079 0.128247441 0.15550815 1184.7308 4.278660488 118.1715674 27.25627897 1.00E-14 13.9999993 -1.322163182 IES(ph)DVQEPTEPEDDLDIMLGNKK ddPTM_HeLa_A485_30min_R1 1 IESDVQEPTEPEDDLDIMLGNKK 23 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(1)DVQEPTEPEDDLDIMLGNKK 178.53 6.87E-21 79436000 85076 50023 25567 102060 72292 67764 120380 110370 48756 136340 TRUE FALSE FALSE 104000.8627 55872.75471 35025.29723 107635.2794 65094.35465 71312.01826 94659.82959 83301.58445 58540.88198 102352.9472 1.016100323 0.545883204 0.34220116 1.05160899 0.63597929 0.696726574 0.924837362 0.813866007 0.571951112 1 16.64319312 -5.267597644 24.98461535 0.798179869 0.62584373 0.127123199 0.211701244 1060.966778 4304433.754 0.058843954 0.089803172 5.40E-06 5.267597644 -0.172336139 IES(ph)DVQEPTEPEDDLDIMLGNKK ddPTM_HeLa_A486_30min_R1 2 IESDVQEPTEPEDDLDIMLGNKK 23 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(1)DVQEPTEPEDDLDIMLGNKK;IES(1)DVQEPTEPEDDLDIMLGNKK ; 203.78 4.55E-29 204280000 200926 171634 58330 112364 129372 222620 304310 252050 126672 320510 TRUE FALSE FALSE 186842.125 158033.0968 80916.93813 261589.0706 113144.9574 195155.4078 228168.4193 194663.7172 137652.031 240252.2098 0.777691598 0.657779992 0.336799974 1.088810258 0.470942421 0.812293914 0.949703728 0.810247354 0.572948033 1 17.87419018 -6.482363345 24.84126765 0.826496 0.668134932 0.128982508 0.211560802 1067.131565 654292.7038 0.072740214 0.064141874 3.29E-07 6.482363345 -0.158361069 IES(ph)PKLER ddPTM_HeLa_A485_30min_R1 10 IESPKLER 8 1 Q5TBM3;A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4 Q5TBM3 HSPH1 Heat shock protein 105 kDa 1 0 IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER ;;;;;;;;; 132.17 0.00025538 58341150000 20207350 14866700 14496150 47258700 41515060 25078610 52139700 51353800 21947920 66509900 TRUE FALSE FALSE 24702405.29 16605231.24 19858879.12 49840323.12 37381674.86 26391687.24 40999627.15 38759200.03 26352666.23 49930205.95 0.494738702 0.332568851 0.39773277 0.99819983 0.748678563 0.528571568 0.821138755 0.776267578 0.527790057 1 25.57340952 -5.231097172 24.08870242 0.753191472 0.400768794 0.53259371 0.155197927 351.0892688 278729.0998 0.041429915 0.071744326 5.87E-06 5.231097172 -0.352422678 IES(ph)PKLER ddPTM_HeLa_A486_30min_R1 9 IESPKLER 8 1 Q5TBM3;A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4 Q5TBM3 HSPH1 Heat shock protein 105 kDa 1 0 IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER;IES(1)PKLER ;;;;;;;; 147.62 0.00013923 54155060000 31455540 35227770 20530640 38206070 47663570 52771880 80161340 77733850 29078600 67525200 TRUE FALSE FALSE 29250669.08 32436193.21 28480653.64 88945661.79 41685160.61 46261421.99 60104124.87 60035549.27 31599156.46 50616450.4 0.577888589 0.64082315 0.562675838 1.75724811 0.823549662 0.913960217 1.187442509 1.186087701 0.624286298 1 25.593103 IES(ph)S(ph)IQSLQDLS(ph)K ddPTM_HeLa_A486_30min_R1 2 IESSIQSLQDLSK 13 0 A0A087X043;O43424-2;O43424 A0A087X043 GRID2 "Glutamate receptor ionotropic, delta-2" 3 0 IES(0.981)S(0.513)IQS(0.513)LQDLS(0.994)K;IES(0.975)S(0.518)IQS(0.518)LQDLS(0.989)K ; 56.121 0.031213 13978900000 8445160 7893060 2992900 60962 2917640 4145770 2804670 2875410 4806220 2058090 TRUE FALSE FALSE 7853197.895 7267585.18 4151831.033 141922.6168 2551682.385 3634307.049 2102911.901 2220741.913 5222827.019 1542730.868 5.090452299 4.710857435 2.691221858 0.091994411 1.654003584 2.35576219 1.363110018 1.439487573 3.385442741 1 20.55705497 -4.842777272 3.394372103 1.638069585 4.986770626 0.71748986 0.814329018 0.117902917 2.660572758 0.218803845 0.546755864 1.44E-05 4.842777272 3.34870104 IES(ph)YEGR ddPTM_HeLa_A485_30min_R1 2 IESYEGR 7 0 C9JPX5;C9JKL2;O95772-2;O95772;C9JJ39;C9J3F5 C9JPX5 STARD3NL MLN64 N-terminal domain homolog 1 0 IES(1)YEGR;IES(1)YEGR ; 119.75 0.0020962 1120340000 1148700 864570 719170 1271050 968760 825960 1435830 1070280 785090 2334890 TRUE FALSE FALSE 1404224.352 965673.9407 985220.9102 1340484.243 872306.8529 869205.9884 1129053.191 807792.1519 942650.3617 1752844.893 0.801111586 0.550918079 0.562069647 0.764747781 0.497652049 0.495883002 0.644126126 0.460846339 0.537783101 1 20.74126691 -10.02307839 5.425422301 1.000002074 0.585931063 0.562217897 0.108317251 2.69E-06 4.85E-07 0.103918309 0.025203766 9.48E-11 10.02307839 -0.414071011 IES(ph)YEGR ddPTM_HeLa_A486_30min_R1 1 IESYEGR 7 0 C9JPX5;C9JKL2;O95772-2;O95772;C9JJ39;C9J3F5 C9JPX5 STARD3NL MLN64 N-terminal domain homolog 1 0 IES(0.998)Y(0.002)EGR 61.582 0.034241 543020000 232680 263770 237130 116800 298100 317010 318200 300500 294040 397330 TRUE FALSE FALSE 216370.3336 242867.9046 328953.0866 271916.3027 260709.5183 277900.5293 238582.9944 232082.7099 319527.6239 297835.9818 0.726474794 0.815441785 1.104477319 0.912973312 0.875345943 0.933065668 0.801054973 0.779229925 1.072830831 1 18.18415853 -14 0.014223213 2.051048958 3.76E-10 0.11861969 0.113104807 19803.87858 21.32202648 1903.145302 1237.851577 1.00E-14 14 -2.051048958 IESDVQEPT(ph)EPEDDLDIMLGNK ddPTM_HeLa_A485_30min_R1 2 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(0.001)DVQEPT(0.999)EPEDDLDIMLGNK;IESDVQEPT(1)EPEDDLDIMLGNK ; 138.08 6.98E-07 78117000 160407 126815 101176 174147 160694 143150 191420 204081 119772 225050 TRUE FALSE FALSE 196088.9838 141644.9111 138605.2127 183660.2096 144694.7411 150645.1126 150521.5532 154029.8148 143809.1418 168949.1767 1.160638883 0.838387696 0.820395905 1.087073718 0.856439457 0.891659347 0.890928007 0.911693195 0.851197647 1 17.36622979 IESDVQEPT(ph)EPEDDLDIMLGNK ddPTM_HeLa_A486_30min_R1 1 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IESDVQEPT(1)EPEDDLDIMLGNK 117.82 0.00014662 35519000 57510 60400 33729 25438 54013 61379 76944 75136 45516 77138 TRUE FALSE FALSE 53478.84598 55613.68403 46789.77209 59220.94957 47238.18589 53806.68304 57691.79737 58029.17301 49461.36353 57822.14272 0.924885234 0.961806004 0.809201629 1.024191543 0.816956683 0.930554983 0.997745754 1.003580467 0.855405234 1 15.81933445 -6.529985406 24.02813792 0.964433993 0.907691709 0.124220725 0.071079995 233.9342107 790932.4349 0.025832603 0.020061886 2.95E-07 6.529985406 -0.056742284 IESDVQEPT(ph)EPEDDLDIMLGNKK ddPTM_HeLa_A485_30min_R1 3 IESDVQEPTEPEDDLDIMLGNKK 23 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK ;; 185.7 6.18E-21 311682000 264218 183001 115324 292989 254609 242096 373966 396867 158878 362262 TRUE FALSE FALSE 322992.3826 204401.3751 157987.1466 308994.2472 229259.234 254771.7722 294065.1091 299534.746 190763.3573 271956.7503 1.18766084 0.751595152 0.580927469 1.136188923 0.842998873 0.936809886 1.081293657 1.101405814 0.701447407 1 18.05301771 -5.286384447 24.99198919 0.973455889 0.831214401 0.094816599 0.185357566 1705.121522 1708325.005 0.052063894 0.077259383 5.17E-06 5.286384447 -0.142241488 IESDVQEPT(ph)EPEDDLDIMLGNKK ddPTM_HeLa_A486_30min_R1 6 IESDVQEPTEPEDDLDIMLGNKK 23 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK ;;;;; 177.52 1.54E-15 372584000 569595 512791 237200 284211 496540 618789 791655 724339 371076 755724 TRUE FALSE FALSE 529669.3319 472155.5736 329050.1924 661657.5712 434259.3231 542449.1046 593574.5457 559422.8219 403241.1665 566485.7915 0.935009033 0.833481758 0.580862216 1.168003825 0.766584669 0.957568774 1.047818947 0.987531956 0.711829268 1 19.11168025 -5.25792129 24.99637023 0.944896524 0.788154101 0.20794055 0.14767906 519.4628165 3690820.273 0.039857327 0.065667046 5.52E-06 5.25792129 -0.156742423 IET(ph)DEEES(ph)CDNAHGDANQPAR ddPTM_HeLa_A485_30min_R1 1 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 IET(1)DEEES(1)CDNAHGDANQPAR 75.868 7.76E-05 0 72496 72733 72949 111150 127810 65630 79834 84252 65562 124790 TRUE FALSE FALSE 88622.48509 81238.49166 99935.87076 117221.8431 115084.7876 69066.28532 62776.81372 63589.0649 78719.69203 93682.14959 0.945991157 0.867171516 1.066754672 1.251271919 1.228460151 0.737240612 0.670104326 0.678774614 0.840284861 1 16.51548656 -6.278185561 24.51111626 0.758005727 1.070230352 0.509376803 0.139377041 538.605442 788345.4716 0.053214245 0.04706381 5.27E-07 6.278185561 0.312224624 IET(ph)DEEES(ph)CDNAHGDANQPAR ddPTM_HeLa_A486_30min_R1 2 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 IET(1)DEEES(1)CDNAHGDANQPAR;IET(1)DEEES(1)CDNAHGDANQPAR ; 191.44 2.41E-19 694690000 183907 247600 150879 127864 240450 259980 310030 277160 190875 298090 TRUE FALSE FALSE 171016.069 227979.2743 209303.3895 297673.8539 210290.5189 227906.3109 232457.2148 214056.7184 207420.1987 223446.3238 0.765356378 1.02028653 0.936705451 1.332194009 0.941123198 1.019959993 1.040326871 0.957978251 0.928277517 1 17.76956878 -4.171820712 2.748150535 1.026167044 0.675953116 0.315181704 0.111608801 0.884420879 7.090573567 0.028839657 0.770677075 6.73E-05 4.171820712 -0.350213928 IET(ph)DEEESCDNAHGDANQPAR ddPTM_HeLa_A485_30min_R1 4 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR ;;; 374.5 3.36E-142 6957460000 500446 531929 653370 956360 920250 558015 941520 781040 567856 1202860 TRUE FALSE FALSE 611768.4862 594133.4694 895078.752 1008603.525 828626.6788 587231.8025 740356.5605 589488.7154 681819.4905 903009.139 0.677477624 0.657948457 0.991217822 1.116936121 0.917628231 0.650305492 0.819877151 0.652804817 0.755052702 1 19.78438106 -6.239210317 24.68827408 0.756675137 0.880540403 0.079490435 0.156715435 1616.275583 1795085.702 0.055644959 0.055603053 5.76E-07 6.239210317 0.123865265 IET(ph)DEEESCDNAHGDANQPAR ddPTM_HeLa_A486_30min_R1 4 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR ;;; 326.81 5.17E-114 8601200000 576189 667410 338646 222226 667510 582880 733760 737140 385605 767540 TRUE FALSE FALSE 535801.1265 614522.0009 469778.8005 517353.3587 583784.6715 510970.1919 550165.4871 569309.3137 419029.5519 575342.9882 0.931272541 1.068096794 0.816519555 0.899208593 1.014672436 0.888114051 0.956239145 0.989512909 0.728312607 1 19.13406274 IETIAASS(ph)TPTPIRK ddPTM_HeLa_A485_30min_R1 1 IETIAASSTPTPIRK 15 1 Q96P47;Q96P47-2;Q96P47-4;Q96P47-5;H7C5G0;H7C4U6;E7ESL9;Q96P47-3;Q96P47-6 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 IETIAAS(0.11)S(0.499)T(0.388)PT(0.003)PIRK 91.518 0.0006537 264330000 151100 166260 109300 259680 250850 243050 363530 341530 157630 357900 TRUE FALSE FALSE 184711.6737 185702.6607 149734.6184 273865.6609 225874.4932 255775.7222 285858.8457 257769.232 189264.8951 268682.1167 0.687472899 0.691161224 0.557292834 1.019292479 0.840675576 0.951964073 1.063929558 0.959383658 0.704419399 1 18.03554077 -5.26242725 24.99998496 0.934789465 0.649894204 0.630752966 0.101285803 57.44948191 1453885.851 0.028354127 0.04490856 5.46E-06 5.26242725 -0.284895261 IETIAASST(ph)PTPIRK ddPTM_HeLa_A486_30min_R1 3 IETIAASSTPTPIRK 15 1 Q96P47;Q96P47-2;Q96P47-4;Q96P47-5;H7C5G0;H7C4U6;E7ESL9;Q96P47-3;Q96P47-6 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 IETIAASS(0.057)T(0.941)PT(0.002)PIRK;IETIAAS(0.002)S(0.06)T(0.936)PT(0.001)PIRK;IETIAAS(0.012)S(0.239)T(0.62)PT(0.129)PIRK ;; 155.88 1.95E-08 678420000 488390 592300 493580 204959 843320 511040 704650 580500 528100 801890 TRUE FALSE FALSE 454156.383 545363.9909 684707.3945 477154.9101 737542.942 447993.0807 528339.117 448332.8222 573876.1332 601091.5246 0.755552798 0.907289437 1.139106719 0.793814071 1.227006058 0.74529928 0.878966173 0.745864488 0.954723382 1 19.19722515 IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNS(ph)EASPSR ddPTM_HeLa_A485_30min_R1 1 IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNSEASPSR 39 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 IETSIGQSTVIIDLTEDSNEQPDS(0.006)LVDHNKLNS(0.548)EAS(0.433)PS(0.013)R 153.97 1.71E-10 219590000 37511 38338 40001 42853 56213 42721 60822 55958 41423 57224 TRUE FALSE FALSE 45855.19254 42821.2956 54799.03448 45193.95088 50616.23634 44957.8055 47826.88283 42234.21276 49736.21615 42959.10993 1.067414865 0.996791965 1.275609168 1.052022515 1.178242204 1.046525535 1.113311773 0.98312588 1.157757138 1 15.39067648 -6.336040692 24.99999998 1.062412365 1.113039759 0.091064746 0.084919908 376.5232272 126175.807 0.028989091 0.025565976 4.61E-07 6.336040692 0.050627394 IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNSEAS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNSEASPSR 39 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNS(0.014)EAS(0.981)PS(0.005)R;IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNS(0.001)EAS(0.996)PS(0.003)R ; 415.28 3.54E-221 395780000 176795 161742 134946 48409 185016 197717 220640 200710 156285 185626 TRUE FALSE FALSE 164402.5835 148924.9749 187200.7052 112698.5985 161809.5681 173324.6868 165433.5383 155012.7145 169831.9096 139144.0414 1.181528018 1.070293585 1.345373494 0.809941966 1.162892543 1.245649365 1.188937282 1.114044935 1.220547484 1 17.0862196 -5.955696588 24.99999516 1.167727891 1.100619845 0.030191091 0.138632537 464.8925918 262332.2283 0.041970323 0.047589845 1.11E-06 5.955696588 -0.067108046 IEVDEGFCS(ph)PKPSEIK ddPTM_HeLa_A485_30min_R1 1 IEVDEGFCSPKPSEIK 16 1 Q9UHV7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 IEVDEGFCS(0.997)PKPS(0.003)EIK 50.425 0.023957 165880000 167150 86090 66099 415920 145390 95832 197870 136980 102940 508220 TRUE FALSE FALSE 204331.9408 96157.47662 90551.77071 438640.6564 130914.4611 100849.6153 155593.4581 103385.4402 123599.1138 381530.1071 0.535559153 0.252031163 0.237338467 1.149688185 0.343130093 0.264329377 0.407814364 0.270975837 0.323956384 1 18.54143738 -10.16422163 3.899292126 1.00031782 0.419993428 0.311127778 0.258669865 147671470.3 266453378.6 586940.5322 0.068658088 6.85E-11 10.16422163 -0.580324392 IEVDEGFCS(ph)PKPSEIK ddPTM_HeLa_A486_30min_R1 2 IEVDEGFCSPKPSEIK 16 1 Q9UHV7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 IEVDEGFCS(1)PKPSEIK;IEVDEGFCS(1)PKPSEIK ; 104.89 0.00013004 636620000 679320 940990 265790 634350 647270 1264840 1555920 1256120 681290 1652910 TRUE FALSE FALSE 631703.176 866422.5254 368711.0061 1476798.858 566083.361 1108796.901 1166612.359 970128.8969 740344.7657 1239010.577 0.509844861 0.699285818 0.297585035 1.191917878 0.456883397 0.894905113 0.941567716 0.782986776 0.597529012 1 20.24075707 -5.242520746 24.99868549 0.819738064 0.521943334 0.338457654 0.213501586 1035.381811 1368129.926 0.055251958 0.095499225 5.72E-06 5.242520746 -0.29779473 IEVDEGFCS(ph)PKPSEIKDFSYVYKPENCQILVGCSMFAPLK ddPTM_HeLa_A486_30min_R1 1 IEVDEGFCSPKPSEIKDFSYVYKPENCQILVGCSMFAPLK 40 3 Q9UHV7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 IEVDEGFCS(0.992)PKPS(0.007)EIKDFS(0.001)YVYKPENCQILVGCSMFAPLK 115.57 5.50E-06 183660000 50960 61581 19706 63487 55344 102850 147490 130630 51013 156980 TRUE FALSE FALSE 47387.96716 56701.09729 27336.69094 147800.9445 48402.23946 90161.4127 110586.442 100888.4006 55434.84791 117671.1862 0.402715131 0.481860506 0.232314229 1.256050433 0.411334678 0.76621487 0.939792022 0.857375572 0.471099593 1 16.84440157 -5.22738771 24.99924642 0.795013449 0.383252974 0.419030944 0.237753738 637.5567154 468065.5736 0.061946825 0.107288635 5.92E-06 5.22738771 -0.411760475 IEVIEIMTDR ddPTM_HeLa_A485_30min_R1 2 IEVIEIMTDR 10 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;F8VYN5;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 173.37 2.12E-06 47574000 37392 45406 52868 35056 63760 46779 49605 64095 50500 52604 FALSE FALSE TRUE 45709.7214 50715.83672 72426.07322 36971.02051 57411.83053 49228.27611 39006.48651 48375.60075 60634.88679 39490.7909 1.157477993 1.284244644 1.833999056 0.936193469 1.453803006 1.2465761 0.98773627 1.224984348 1.535418395 1 15.26922864 -5.294427667 24.99761059 1.211134836 1.411141677 0.152190193 0.24389134 1332.76623 1009930.304 0.068418958 0.101489246 5.08E-06 5.294427667 0.200006841 IEVIEIMTDR ddPTM_HeLa_A486_30min_R1 1 IEVIEIMTDR 10 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;Q32P51;F8VYN5;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 95.642 0.03231 13450000 15459 17251 20317 9382.9 31139 22473 19652 26422 15855 20308 FALSE FALSE TRUE 14375.40393 15883.96793 28184.28651 21843.86539 27233.25626 19700.50975 14734.86174 20406.28739 17229.32417 15222.74462 0.944337194 1.043436537 1.851458933 1.434949212 1.788984637 1.294149659 0.9679504 1.340513022 1.131814571 1 13.89394088 -6.525374593 24.74320498 1.137389018 1.430123921 0.203239884 0.279413491 126.4393089 1253449.666 0.112581967 0.087758457 2.98E-07 6.525374593 0.292734904 IEVKEES(ph)PQSK ddPTM_HeLa_A485_30min_R1 2 IEVKEESPQSK 11 1 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8Y6T6;A0A3B3ITC5 P11171 EPB41 Protein 4.1 1 0 IEVKEES(0.986)PQS(0.014)K;IEVKEES(0.989)PQS(0.011)K ; 53.777 0.02053 750340000 336570 247580 229075 858620 673000 435910 789940 866280 388390 1359140 TRUE FALSE FALSE 411438.8353 276532.3273 313819.3751 905524.2365 605993.757 458733.5736 621162.8658 653823.4717 466336.3105 1020331.411 0.403240389 0.271022066 0.307566122 0.887480505 0.593918555 0.449592719 0.6087854 0.640795201 0.457043962 1 19.9606064 -14 0.072457153 2.477746427 1.79E-12 0.46324445 0.16471418 293.7561921 1.523376391 73.36183947 8.49463203 1.00E-14 14 -2.477746427 IEVKEES(ph)PQSK ddPTM_HeLa_A486_30min_R1 4 IEVKEESPQSK 11 1 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8Y6T6;A0A3B3ITC5 P11171 EPB41 Protein 4.1 1 0 IEVKEES(0.999)PQS(0.001)K;IEVKEES(0.986)PQS(0.014)K;IEVKEES(0.999)PQS(0.001)K;IEVKEES(1)PQSK ;;; 134.9 1.25E-05 996490000 975470 976230 533450 1113200 1403220 1634210 2432590 2385810 944250 2278680 TRUE FALSE FALSE 907094.5903 898869.9794 740016.1263 2591585.858 1227215.063 1432597.786 1823930.253 1842613.145 1026098.35 1708083.696 0.531059802 0.526244692 0.433243481 1.517247582 0.718474783 0.838716387 1.067822529 1.078760455 0.600730721 1 20.70394724 IEVLDS(ph)PASK ddPTM_HeLa_A485_30min_R1 3 IEVLDSPASK 10 0 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 IEVLDS(1)PASK;IEVLDS(0.988)PAS(0.012)K;IEVLDS(0.999)PAS(0.001)K ;; 207.34 3.08E-21 341040000 1859870 1449880 1114880 2451350 2018150 1551270 2345400 2120350 1431570 2789020 TRUE FALSE FALSE 2273591.665 1619430.854 1527320.506 2585261.043 1817215.9 1632492.098 1844286.13 1600330.838 1718872.968 2093768.642 1.085884858 0.773452626 0.729460015 1.234740549 0.867916284 0.779690777 0.880845234 0.764330311 0.820946944 1 20.99767061 -5.985837916 24.99461053 0.835012285 0.942261424 0.100509773 0.14748845 579.4345227 1022636.291 0.04627315 0.052446003 1.03E-06 5.985837916 0.107249139 IEVLDS(ph)PASK ddPTM_HeLa_A486_30min_R1 2 IEVLDSPASK 10 0 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 IEVLDS(0.987)PAS(0.013)K;IEVLDS(1)PASK ; 169.98 2.86E-07 789460000 1772750 2034810 1008920 808290 1703840 2045600 2391400 2238600 1512880 2400900 TRUE FALSE FALSE 1648489.379 1873564.245 1399600.844 1881739.969 1490128.5 1793234.67 1793046.426 1728919.648 1644017.657 1799699.013 0.915980599 1.041043103 0.777686065 1.045585932 0.827987618 0.996408098 0.996303501 0.960671555 0.913495893 1 20.77932422 IFASIAPSIYGHEDIKR ddPTM_HeLa_A485_30min_R1 1 IFASIAPSIYGHEDIKR 17 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 0 0 87.138 0.0013515 11807000 19516 26642 22680 13278 33537 26233 31711 37263 25273 27794 FALSE FALSE TRUE 23857.26687 29757.55015 31070.27579 14003.34352 30197.93852 27606.51932 24935.68579 28124.19082 30345.05928 20865.46731 1.143385217 1.42616265 1.489076441 0.671125324 1.447268737 1.32307218 1.195069606 1.347882144 1.454319658 1 14.34882961 IFASIAPSIYGHEDIKR ddPTM_HeLa_A486_30min_R1 1 IFASIAPSIYGHEDIKR 17 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 0 0 77.562 0.0044264 9407100 20466 21323 16009 3021.5 24164 17341 20775 20006 17929 15427 FALSE FALSE TRUE 19031.43909 19633.28782 22208.11354 7034.204698 21133.1258 15201.64373 15576.87526 15451.07053 19483.10016 11563.97879 1.645751816 1.697796942 1.920456094 0.608285853 1.827496071 1.314568628 1.347016935 1.336137917 1.684809399 1 13.49735025 -1.000000009 0.037510092 1.22E-11 3.733728213 0.150865377 0.353326644 1791.29755 5.137668285 145.5790243 439.3003738 0.099999998 1.000000009 3.733728213 IFAVSGLIS(ph)DR ddPTM_HeLa_A485_30min_R1 2 IFAVSGLISDR 11 0 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 1 0 IFAVSGLIS(1)DR;IFAVSGLIS(1)DR ; 84.102 0.0045332 139643000 91232 104104 95172 101351 111621 95432 117172 119242 92350 125644 TRUE FALSE FALSE 111526.2437 116278.0572 130380.0832 106887.5485 100507.6213 100428.672 92137.24499 89997.71254 110883.7979 94323.26311 1.182383221 1.232761181 1.382268583 1.133204524 1.065565567 1.064728558 0.976824189 0.954141212 1.175572115 1 16.52532601 -5.555781735 3.332521707 1.035437893 1.263375541 0.645616462 0.074585022 0.148614664 3.431299169 0.022889792 0.031937935 2.78E-06 5.555781735 0.227937649 IFAVSGLIS(ph)DR ddPTM_HeLa_A486_30min_R1 3 IFAVSGLISDR 11 0 Q5VTB9 Q5VTB9 RNF220 E3 ubiquitin-protein ligase RNF220 1 0 IFAVSGLIS(1)DR;IFAVSGLIS(1)DR;IFAVS(0.017)GLIS(0.983)DR ;; 103.14 0.00095543 99971000 158192 157246 114465 62105.7 131726 134857 136156 130284 122685 183728 TRUE FALSE FALSE 147103.5577 144785.2543 158788.9135 144585.2082 115203.6968 118219.7145 102088.3287 100621.1773 133319.4346 137721.3129 1.068124857 1.051291563 1.152972696 1.04983902 0.836498682 0.858398108 0.741267466 0.730614421 0.968037784 1 17.07139231 -5.72253396 4.444535683 0.83556226 1.088510055 0.626935774 0.084411247 0.122476553 5.319913418 0.025489464 0.032229202 1.89E-06 5.72253396 0.252947795 IFDEVMGCFSDS(ph)PPQS(ph)PTFPEAGHTSLYDEDKVPR ddPTM_HeLa_A485_30min_R1 2 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR 35 1 Q13085;Q13085-4;Q13085-2;Q13085-3 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 2 0 IFDEVMGCFSDS(0.999)PPQS(0.859)PT(0.106)FPEAGHT(0.001)S(0.001)LY(0.033)DEDKVPR;IFDEVMGCFSDS(1)PPQS(0.921)PT(0.079)FPEAGHTSLYDEDKVPR ; 181.32 2.04E-20 394740000 78308 110908 102118 24254 117034 129784 80666 115777 126444 38502 TRUE FALSE FALSE 95727.34444 123877.7258 139895.6977 25578.93461 105381.684 136579.2896 63431.05012 87382.50922 151820.151 28904.15998 3.311888134 4.285809583 4.839984895 0.884956858 3.645900248 4.725246804 2.194530136 3.023181068 5.252536351 1 14.81898952 -10.72950412 2.846444185 0.569957148 3.532109172 0.273703026 1.256146371 142740371.8 149530016.5 442380456 0.308435958 1.86E-11 10.72950412 2.962152024 IFDEVMGCFSDS(ph)PPQS(ph)PTFPEAGHTSLYDEDKVPR ddPTM_HeLa_A486_30min_R1 4 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR 35 1 Q13085;Q13085-4;Q13085-2;Q13085-3 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 2 0 IFDEVMGCFSDS(0.999)PPQS(0.866)PT(0.128)FPEAGHT(0.002)S(0.002)LY(0.002)DEDKVPR;IFDEVMGCFSDS(1)PPQS(0.977)PT(0.023)FPEAGHTSLYDEDKVPR;IFDEVMGCFS(0.145)DS(0.828)PPQS(0.787)PT(0.145)FPEAGHT(0.032)S(0.032)LY(0.031)DEDKVPR;IFDEVMGCFS(0.236)DS(0.852)PPQS(0.851)PT(0.046)FPEAGHT(0.005)S(0.005)LY(0.005)DEDKVPR ;;; 204.08 6.60E-29 608688000 150946 274391 282168 15741.2 349539 169153 109290.5 181523 237617 36136 TRUE FALSE FALSE 140365.4649 252647.2578 391431.0063 36646.30912 305696.5593 148284.6227 81944.86094 140194.1755 258213.8329 27087.31039 5.18196391 9.327144488 14.45071514 1.352895824 11.28560034 5.474320651 3.025212166 5.175640308 9.532649389 1 14.72532953 -6.491530222 22.71870215 4.919691353 8.33428369 0.172813523 3.82206222 415.1923957 300895.776 1.322977643 1.164865124 3.22E-07 6.491530222 3.414592337 IFDEVMGCFSDS(ph)PPQSPTFPEAGHTSLYDEDKVPR ddPTM_HeLa_A485_30min_R1 2 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR 35 1 Q13085;Q13085-4;Q13085-2;Q13085-3 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 IFDEVMGCFSDS(0.965)PPQS(0.035)PTFPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQSPTFPEAGHTSLYDEDKVPR ; 268.21 2.56E-65 813060000 166282 302030 354610 79154 542990 186929 290580 303270 302980 214430 TRUE FALSE FALSE 203270.8572 337349.7812 485794.9956 83477.98259 488928.009 196716.3134 228495.2092 228892.557 363785.3069 160976.5473 1.26273585 2.095645526 3.017799821 0.518572326 3.037262367 1.222018466 1.419431669 1.421900027 2.25986526 1 17.29649099 IFDEVMGCFSDS(ph)PPQSPTFPEAGHTSLYDEDKVPR ddPTM_HeLa_A486_30min_R1 3 IFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPR 35 1 Q13085;Q13085-4;Q13085-2;Q13085-3 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 IFDEVMGCFSDS(1)PPQSPTFPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQSPTFPEAGHTSLYDEDKVPR;IFDEVMGCFSDS(1)PPQSPTFPEAGHTSLYDEDKVPR ;; 278.63 9.25E-79 914480000 319946 444530 382423 40061 567850 275394 357748 341392 441210 128427 TRUE FALSE FALSE 297519.4376 409303.8238 530507.4272 93264.03257 496624.958 241418.6883 268235.6665 263664.4941 479454.438 96268.04328 3.090531681 4.251710224 5.510732421 0.968795349 5.158772746 2.507775998 2.786341733 2.738857934 4.98041117 1 16.55476935 -10.85085409 2.774677677 0.025684263 3.526611006 0.24400425 1.348301081 201285710.4 197183821.1 1318946930 0.318167833 1.41E-11 10.85085409 3.500926743 IFDLGS(ph)DNEEVVAGPAPAHAK ddPTM_HeLa_A485_30min_R1 3 IFDLGSDNEEVVAGPAPAHAK 21 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 IFDLGS(1)DNEEVVAGPAPAHAK;IFDLGS(1)DNEEVVAGPAPAHAK;IFDLGS(1)DNEEVVAGPAPAHAK ;; 240.46 1.67E-46 495824000 532960 615190 509480 631400 723580 685960 882040 890160 520080 862930 TRUE FALSE FALSE 651515.1133 687131.1191 697957.8532 665891.7832 651537.8346 721875.8049 693584.9484 671846.8643 624455.2855 647817.432 1.005707906 1.060686368 1.077399 1.027900378 1.00574298 1.114319821 1.070648788 1.037092908 0.963937144 1 19.30522776 -7.643153451 5.163000332 0.982942345 1.052849748 0.417009142 0.032435195 0.201143242 8.030567529 0.024227351 0.008559582 2.27E-08 7.643153451 0.069907403 IFDLGS(ph)DNEEVVAGPAPAHAK ddPTM_HeLa_A486_30min_R1 4 IFDLGSDNEEVVAGPAPAHAK 21 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 IFDLGS(1)DNEEVVAGPAPAHAK;IFDLGS(1)DNEEVVAGPAPAHAK;IFDLGS(1)DNEEVVAGPAPAHAK;IFDLGS(1)DNEEVVAGPAPAHAK ;;; 262.77 3.52E-59 608173000 735763 797906 507429 309801 873044 809563 910381 873859 610499 929849 TRUE FALSE FALSE 684189.8132 734677.0226 703919.0982 721232.3845 763538.6807 709687.3481 682594.0448 674900.3819 663417.5449 697008.7581 0.981608632 1.054042742 1.00991428 1.03475369 1.095450626 1.018190001 0.979319179 0.968281064 0.951806612 1 19.41081726 -6.716354405 3.738446851 0.971185242 1.036478469 0.478590885 0.029677079 0.189669873 5.483282333 0.012437717 0.0089846 1.92E-07 6.716354405 0.065293227 IFEIFGPVAHPFYVLR ddPTM_HeLa_A485_30min_R1 2 IFEIFGPVAHPFYVLR 16 0 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 0 0 ; ; 223.06 5.56E-25 38794000 30661 38120 40764 34190 48094 38073 56348 58519 29086 44634 FALSE FALSE TRUE 37481.43367 42577.8024 55844.29993 36057.71313 43305.59249 40066.44341 44308.78948 44167.1235 34923.29341 33507.56523 1.118596156 1.270692219 1.666617659 1.076106631 1.292412391 1.195743204 1.322351809 1.318123928 1.042251001 1 15.03219924 -7.802790875 5.949162196 1.011168757 1.286971659 0.323769627 0.151160955 0.22929275 19.60844954 0.139687445 0.037757153 1.57E-08 7.802790875 0.275802902 IFEIFGPVAHPFYVLR ddPTM_HeLa_A486_30min_R1 1 IFEIFGPVAHPFYVLR 16 0 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 0 0 221.91 6.44E-25 18320000 17751 20939 22406 8415.2 27995 23729 25737 25998 21020 23494 FALSE FALSE TRUE 16506.74657 19279.71738 31082.20325 19591.01088 24483.60606 20801.55724 19297.33038 20078.82293 22842.03052 17610.94948 0.937300205 1.094757407 1.764936257 1.11243354 1.390249066 1.181171819 1.095757523 1.140132902 1.297035719 1 14.10418507 -6.50572198 22.64139692 1.143988581 1.272128902 0.068839407 0.217343556 652.9035333 861627.1615 0.079336575 0.068188407 3.12E-07 6.50572198 0.128140322 IFFDT(ph)DDDDDMPHSTSR ddPTM_HeLa_A485_30min_R1 2 IFFDTDDDDDMPHSTSR 17 0 Q8NG27-3;Q8NG27 Q8NG27-3 PJA1 E3 ubiquitin-protein ligase Praja-1 1 0 IFFDT(1)DDDDDMPHSTSR;IFFDT(1)DDDDDMPHSTSR ; 226.44 2.80E-34 167311000 32472.6 48233 52231 32355 65401 39377 56662 58574 47920 46831 TRUE FALSE FALSE 39696.01784 53873.42978 71553.42041 34122.47172 58889.4468 41438.71883 44555.70081 44208.63466 57537.10445 35156.89356 1.129110505 1.532371729 2.035260035 0.970576984 1.675046935 1.178679759 1.267338957 1.257467034 1.636581012 1 15.10151998 -5.282307016 24.99962062 1.305650238 1.56226003 0.156096609 0.297290623 1574.777825 1886595.145 0.081764 0.121425024 5.22E-06 5.282307016 0.256609793 IFFDT(ph)DDDDDMPHSTSR ddPTM_HeLa_A486_30min_R1 3 IFFDTDDDDDMPHSTSR 17 0 Q8NG27-3;Q8NG27 Q8NG27-3 PJA1 E3 ubiquitin-protein ligase Praja-1 1 0 IFFDT(1)DDDDDMPHSTSR;IFFDT(1)DDDDDMPHSTSR;IFFDT(1)DDDDDMPHSTSR ;; 292.31 3.32E-68 210007000 71598 69126 70182 8168.4 89496 66496 69433 69892 61310 50004 TRUE FALSE FALSE 66579.34993 63648.20401 97358.34994 19016.44801 78270.57716 58292.3996 52060.12901 53979.11733 66624.40016 37482.67293 1.776270066 1.698070042 2.597422818 0.507339699 2.088180246 1.55518257 1.388911861 1.440108539 1.777471961 1 15.19393622 -9.696679067 0.079604181 3.28E-10 2.473593678 0.147289905 0.499713551 147.439302 2.613565141 57.90932454 25.74963952 2.01E-10 9.696679067 2.473593677 IFGGLDMLAEKLPNLTHLNLSGNK ddPTM_HeLa_A485_30min_R1 1 IFGGLDMLAEKLPNLTHLNLSGNK 24 1 Q92688;Q92688-2 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 0 0 163.71 7.42E-21 29122000 33124 36917 25590 27638 45167 62507 78071 115520 26061 45598 FALSE FALSE TRUE 40492.31952 41234.12201 35056.80589 29147.79396 40670.01489 65779.76987 61390.49307 87188.53887 31291.20365 34231.25777 1.182904812 1.204575137 1.024116792 0.851496435 1.188095838 1.921628773 1.793404539 2.54704456 0.914112004 1 15.06302668 -6.159630287 5.207523235 1.739992102 1.068451356 0.257760708 0.4474291 0.26063617 10.73710127 0.143718644 0.143800151 6.92E-07 6.159630287 -0.671540746 IFGGLDMLAEKLPNLTHLNLSGNK ddPTM_HeLa_A486_30min_R1 1 IFGGLDMLAEKLPNLTHLNLSGNK 24 1 Q92688;Q92688-2 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 0 0 135.68 4.91E-12 15277000 19825 24237 16505 10183 33433 27027 37333 35075 20754 37473 FALSE FALSE TRUE 18435.36988 22316.37185 22896.17802 23706.53862 29239.52139 23692.68353 27991.88853 27089.18818 22552.97343 28089.51689 0.65630783 0.794473324 0.815114696 0.843963914 1.0409407 0.843470666 0.996524385 0.964387828 0.802896451 1 14.77774419 -4.432922203 0.807529095 0.937808693 0.55347158 0.59197176 0.073101311 1.403504163 0.841183782 0.027739004 0.46316526 3.69E-05 4.432922203 -0.384337114 IFGLLMGTLQK ddPTM_HeLa_A485_30min_R1 2 IFGLLMGTLQK 11 0 Q9H307 Q9H307 PNN Pinin 0 0 ; ; 218.55 5.82E-20 23558000 46781 49732 40580 49707 62369 46332 63881 63659 34380 60895 FALSE FALSE TRUE 57187.27206 55547.72479 55592.23067 52422.36755 56159.32337 48757.87188 50232.30249 48046.53044 41279.75065 45714.99719 1.250952107 1.215087569 1.21606112 1.146721443 1.228466079 1.066561848 1.098814516 1.051001496 0.902980492 1 15.48037991 -6.76433931 0.751060943 0.959328615 1.224996908 0.822644156 0.045631627 0.266422478 0.296239468 0.037056554 0.023131795 1.72E-07 6.76433931 0.265668294 IFGLLMGTLQK ddPTM_HeLa_A486_30min_R1 2 IFGLLMGTLQK 11 0 Q9H307 Q9H307 PNN Pinin 0 0 ; ; 228.05 1.12E-20 25684000 59063 51942 34184 21498 48622 52081 66318 54489 44113 58571 FALSE FALSE TRUE 54922.9887 47825.92675 47420.96028 50048.43045 42523.37538 45655.77574 49724.53496 42083.04419 47936.75036 43904.44037 1.250966605 1.089318674 1.080094858 1.139940061 0.968543843 1.03988971 1.132562778 0.958514534 1.091842874 1 15.42207924 -1.000000001 0.721983558 1.041981371 30.31972685 0.520557787 0.058249088 262.2495687 1.270304178 0.021708412 12438.18397 0.1 1.000000001 29.27774547 IFGPIWNR ddPTM_HeLa_A485_30min_R1 1 IFGPIWNR 8 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 132.94 0.022638 108610000 51908 74850 85505 69030 79084 62555 76797 63922 70548 86326 FALSE FALSE TRUE 63454.75552 83603.05639 117136.8577 72800.93411 71210.11928 65830.28307 60388.69358 48245.02927 84706.3365 64806.51691 0.979141582 1.290040884 1.807485778 1.12335823 1.098811087 1.015797272 0.93183057 0.744447188 1.3070651 1 15.98385128 -5.508623737 23.6499439 1.009458895 1.370907488 0.308913804 0.228814512 379.3724313 629402.2305 0.066715022 0.09463261 3.10E-06 5.508623737 0.361448593 IFGPIWNR ddPTM_HeLa_A486_30min_R1 1 IFGPIWNR 8 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 96.048 0.0086759 0 54609 63422 52126 25349 83580 58197 54458 60543 53459 70673 FALSE FALSE TRUE 50781.1911 58396.20974 72310.58318 59013.75307 73096.61705 51017.24584 40832.0324 46758.68054 58092.86916 52976.0208 0.958569374 1.102314007 1.364968189 1.113971042 1.37980573 0.963025253 0.770764429 0.882638595 1.096588009 1 15.69305186 -6.437874312 8.517179828 0.919154852 1.184993193 0.426171318 0.139601434 0.324201221 29.98405012 0.050090015 0.044084387 3.65E-07 6.437874312 0.265838341 IFHLEVCSR ddPTM_HeLa_A485_30min_R1 1 IFHLEVCSR 9 0 Q92783-2;Q92783;O75886-2;O75886 Q92783-2 STAM;STAM2 Signal transducing adapter molecule 1;Signal transducing adapter molecule 2 0 0 102.07 0.003237 12563000 13573 13485 14150 12964 19714 14797 17364 20930 12669 17659 FALSE FALSE TRUE 16592.26702 15061.95345 19384.67383 13672.19049 17751.20494 15571.74804 13654.03955 15796.88468 15211.55209 13256.93629 1.251591368 1.136156433 1.462228784 1.031323542 1.339012616 1.174611366 1.029954376 1.19159392 1.147440989 1 13.69445978 -6.523314016 24.94303607 1.107366539 1.240213454 0.264246426 0.118264461 22.60347895 1295080.759 0.042413239 0.033167314 3.00E-07 6.523314016 0.132846916 IFHLEVCSR ddPTM_HeLa_A486_30min_R1 1 IFHLEVCSR 9 0 Q92783-2;Q92783;O75886-2;O75886 Q92783-2 STAM;STAM2 Signal transducing adapter molecule 1;Signal transducing adapter molecule 2 0 0 76.465 0.026492 25019000 10909 12725 12044 4452.1 17173 12805 12907 13016 12990 13187 FALSE FALSE TRUE 10144.33543 11716.62466 16707.75935 10364.7138 15019.00221 11225.24929 9677.532084 10052.54094 14115.98366 9884.889367 1.026246735 1.185306605 1.690232306 1.048541204 1.519390015 1.135596856 0.979022802 1.016960389 1.428036585 1 13.2710091 -6.49537547 24.21814043 1.100259917 1.299410907 0.145009828 0.221547531 932.3102297 820951.4465 0.077114512 0.067809345 3.20E-07 6.49537547 0.19915099 IFIGTFK ddPTM_HeLa_A485_30min_R1 2 IFIGTFK 7 0 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3;J3KRY3;S4R3P3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 ; ; 158.38 0.0023119 97829000 268540 329820 300810 297580 408360 350320 452100 472260 295610 404220 FALSE FALSE TRUE 328275.7965 368389.5799 412092.1367 313836.0419 367702.2446 368662.2135 355505.1417 356437.4945 354936.2155 303455.3931 1.081792593 1.213982642 1.357999054 1.034208154 1.211717613 1.214881073 1.171523557 1.174596012 1.169648731 1 18.21112494 -9.453071381 0.633869232 0.980254233 1.188962286 0.309359583 0.081294658 13.5562555 4.410114818 0.707321834 0.031576149 3.52E-10 9.453071381 0.208708053 IFIGTFK ddPTM_HeLa_A486_30min_R1 2 IFIGTFK 7 0 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3;J3KRY3;S4R3P3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 ; ; 163.84 0.0015651 139654000 361760 408610 303500 128792 445050 398590 448460 446340 354170 428930 FALSE FALSE TRUE 336402.4921 376230.2555 421023.328 299834.2848 389227.6791 349416.0184 336250.5647 344718.1255 384869.7408 321523.1361 1.046277715 1.170149869 1.309465107 0.932543419 1.210574405 1.086752333 1.045805191 1.072140965 1.197020362 1 18.29456303 -5.254271236 24.99901388 1.085407621 1.174782773 0.170331216 0.097573859 1095.614551 3820962.884 0.025957166 0.043896662 5.57E-06 5.254271236 0.089375152 IFIRFPK ddPTM_HeLa_A485_30min_R1 1 IFIRFPK 7 1 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 0 0 88.734 0.020481 20203000 14919 19452 15231 13608 20626 18529 22502 31750 15255 22272 FALSE FALSE TRUE 18237.68008 21726.74219 20865.58071 14351.37058 18572.40302 19499.14979 17694.26388 23963.26272 18316.53857 16720.00029 1.090770321 1.299446281 1.247941409 0.858335546 1.110789635 1.166217073 1.058269352 1.433209468 1.095486738 1 14.02928725 IFIRFPK ddPTM_HeLa_A486_30min_R1 1 IFIRFPK 7 1 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 0 0 86.113 0.023006 22446000 37938 35083 26035 13726 44762 32542 43633 35755 32803 48671 FALSE FALSE TRUE 35278.74211 32302.89531 36116.44924 31954.82167 39147.53257 28527.2989 32715.5619 27614.36703 35646.39045 36483.4648 0.96697894 0.885411939 0.989940222 0.875871353 1.073021238 0.781924059 0.896722997 0.756900891 0.977056062 1 15.15495513 -6.277232782 24.95652509 0.868214757 0.951383045 0.146074229 0.087431867 1362.668075 2153263.586 0.02864488 0.025349443 5.28E-07 6.277232782 0.083168288 IFLAQKPAPLLES(ph)PFKDR ddPTM_HeLa_A485_30min_R1 1 IFLAQKPAPLLESPFKDR 18 2 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 IFLAQKPAPLLES(1)PFKDR 103.31 8.86E-05 140750000 139790 105100 68935 256320 124420 113590 172430 124120 100900 319240 TRUE FALSE FALSE 170885.8032 117390.5308 94436.92512 270322.1126 112032.3079 119537.3968 135588.9219 93679.37539 121149.7045 239659.3432 0.713036266 0.489822467 0.394046499 1.127943142 0.467464804 0.498780457 0.565756878 0.390885555 0.505507955 1 17.87062566 -10.0371853 4.713086853 1.000011807 0.570424467 0.280815119 0.205176701 277457630.7 12.04968369 37491.08546 0.049951713 9.18E-11 10.0371853 -0.42958734 IFLAQKPAPLLES(ph)PFKDR ddPTM_HeLa_A486_30min_R1 2 IFLAQKPAPLLESPFKDR 18 2 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 IFLAQKPAPLLES(1)PFKDR;IFLAQKPAPLLES(1)PFKDR ; 154.79 7.73E-09 505360000 365630 375570 166840 198903 244098 436200 489930 431880 297680 668750 TRUE FALSE FALSE 340001.2251 345808.4654 231444.9161 463056.236 213480.9527 382386.079 367344.332 333550.3519 323483.1421 501290.6472 0.678251683 0.68983626 0.461698054 0.923728058 0.425862629 0.762803138 0.732797099 0.665383154 0.645300573 1 18.93528779 -13.99999998 0.353953321 4.961758251 0.655277187 0.357805969 0.134515485 482.6146403 3.925416045 1452.890012 0.09562026 1.00E-14 13.99999998 -4.306481064 IFPGLS(ph)PVR ddPTM_HeLa_A485_30min_R1 3 IFPGLSPVR 9 0 Q5VZK9-2;Q5VZK9;A0A0U1RR91;Q5VZK9-3 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 IFPGLS(1)PVR;IFPGLS(1)PVR;IFPGLS(1)PVR ;; 123.96 0.00031152 195966000 202270 271892 284802 188819 321281 240111 276845 291580 239768 278396 TRUE FALSE FALSE 247264.2637 303687.4043 390162.1114 199133.7039 289293.1356 252682.8407 217694.8041 220069.5478 287887.2383 208997.0007 1.18309958 1.453070634 1.866831151 0.952806515 1.384197546 1.209026157 1.041616882 1.052979455 1.377470669 1 17.67312271 -5.280167341 24.99985806 1.15592133 1.496207545 0.380705102 0.20748573 862.6767483 1151580.682 0.058373616 0.086745389 5.25E-06 5.280167341 0.340286215 IFPGLS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 IFPGLSPVR 9 0 Q5VZK9-2;Q5VZK9;A0A0U1RR91;Q5VZK9-3 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 IFPGLS(1)PVR;IFPGLS(1)PVR;IFPGLS(1)PVR;IFPGLS(1)PVR ;;; 94.309 0.0028618 278081000 409779 517405 411921 201702 565693 421225 470229 487786 422476 489159 TRUE FALSE FALSE 381055.6082 476403.9434 571427.8428 469572.4495 494738.5091 369258.5422 352572.7306 376727.7761 459096.5598 366670.4025 1.039231979 1.299270244 1.558423693 1.280639087 1.349273096 1.007058491 0.961552196 1.027428921 1.25206877 1 18.48412429 -6.260517272 24.99891838 1.045831634 1.317713747 0.458948766 0.138485886 77.94795904 2113230.241 0.048891006 0.046233579 5.49E-07 6.260517272 0.271882113 IFQGSFGGPTLYENPHYQS(ph)PNMHR ddPTM_HeLa_A485_30min_R1 2 IFQGSFGGPTLYENPHYQSPNMHR 24 0 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 1 0 IFQGSFGGPTLYENPHY(0.128)QS(0.872)PNMHR;IFQGSFGGPTLYENPHY(0.439)QS(0.561)PNMHR ; 187.75 8.49E-21 2121650000 297550 273430 286850 322570 398080 258060 357540 288630 308340 463380 TRUE FALSE FALSE 363738.971 305405.26 392967.7518 340191.1823 358445.7575 271571.6226 281148.6582 217843.0399 370221.0097 347867.8939 1.045623863 0.877934599 1.129646509 0.977932107 1.030407703 0.780674582 0.80820525 0.626223471 1.064257485 1 18.40818001 -6.255972896 24.84185861 0.829531941 1.009452649 0.261562791 0.127599462 495.7373978 2252828.869 0.040862576 0.039719334 5.55E-07 6.255972896 0.179920708 IFQGSFGGPTLYENPHYQS(ph)PNMHR ddPTM_HeLa_A486_30min_R1 1 IFQGSFGGPTLYENPHYQSPNMHR 24 0 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 1 0 IFQGSFGGPTLY(0.001)ENPHY(0.436)QS(0.563)PNMHR 180.13 1.55E-20 1234200000 161540 214170 172770 47822 223010 183860 231520 226410 193350 175320 TRUE FALSE FALSE 150216.8802 197198.3892 239671.1709 111332.0328 195038.0063 161177.2226 173591.2472 174861.3855 210109.7337 131418.7309 1.143040107 1.500534877 1.823721545 0.847154984 1.484095951 1.226440261 1.320901869 1.330566688 1.598780724 1 17.00381139 -10.09074763 4.117653919 0.999936102 1.363503741 0.15753877 0.252464279 23655043.24 9661537.265 13374.02532 0.059313109 8.11E-11 10.09074763 0.363567639 IFQGSFGGPTLYENPHYQS(ph)PNMHRR ddPTM_HeLa_A486_30min_R1 1 IFQGSFGGPTLYENPHYQSPNMHRR 25 1 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 1 0 IFQGSFGGPTLY(0.007)ENPHY(0.367)QS(0.627)PNMHRR 137.42 1.56E-06 239180000 44427 52057 53541 20677 64469 48097 58559 57195 43592 56445 TRUE FALSE FALSE 41312.89672 47931.81373 74273.50908 48137.10096 56382.69687 42163.28115 43906.91883 44172.94706 47370.58966 42310.8046 0.976414821 1.132850443 1.755426534 1.137702329 1.332583897 0.996513339 1.037723561 1.044011039 1.119586122 1 15.3687385 -6.262523295 24.99705537 1.042202293 1.279495192 0.256387207 0.193048382 145.0038069 3344021.197 0.068192484 0.063566611 5.46E-07 6.262523295 0.237292898 IFSFAHQTISALIK ddPTM_HeLa_A485_30min_R1 2 IFSFAHQTISALIK 14 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 0 ; ; 178.23 1.43E-10 95489000 225139 237635 269310 185824 383950 145278 267960 187455 187780 413970 FALSE FALSE TRUE 275220.3938 265424.3461 368938.9759 195975.0946 345722.5899 152884.5314 210708.157 141481.3673 225465.7236 310774.8976 0.88559403 0.854072669 1.187158226 0.630601429 1.112453395 0.491946205 0.678008934 0.455253524 0.725495287 1 18.24551045 -6.266389917 24.99869527 0.636585896 0.92674842 0.299912369 0.198108752 468.8756774 2367670.63 0.064268119 0.058444551 5.42E-07 6.266389917 0.290162524 IFSFAHQTISALIK ddPTM_HeLa_A486_30min_R1 2 IFSFAHQTISALIK 14 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 0 ; ; 166.6 1.03E-07 92847000 238808 238682 172256 52441 207748 215328 243521 208029 242488 197876 FALSE FALSE TRUE 222068.7924 219767.9691 238958.1364 122085.2982 181690.3087 188763.0207 182589.4701 160665.3379 263507.0551 148326.5616 1.497161331 1.481649454 1.611027275 0.82308453 1.224934406 1.272617787 1.230996445 1.083186559 1.776533159 1 17.17841745 -5.195378496 24.99991914 1.210237208 1.525116728 0.292732935 0.233561636 254.6341614 96362.2111 0.061537289 0.1065857 6.38E-06 5.195378496 0.31487952 IFSHAYFHHR ddPTM_HeLa_A485_30min_R1 1 IFSHAYFHHR 10 0 S4R3N1;B4DM50;Q9Y3A3-2;Q9Y3A3-3;Q9Y3A3 S4R3N1 HSPE1-MOB4;MOB4 MOB-like protein phocein 0 0 125.56 0.00091037 2686400 1489.2 3349.9 4585 2520.4 3127.6 2430.8 1617.4 3259.9 2866.6 2672.1 FALSE FALSE TRUE 1820.467402 3741.641665 6281.182298 2658.08307 2816.205162 2558.072929 1271.829277 2460.404414 3441.900326 2005.994646 0.90751359 1.865230135 3.131205913 1.325069872 1.403894655 1.275214235 0.634014293 1.226525912 1.715807334 1 10.97010204 -5.491991468 24.99322073 1.210503767 2.002779655 0.268949741 0.56264565 884.3392689 715585.1961 0.163135317 0.241638223 3.22E-06 5.491991468 0.792275888 IFSLSGT(ph)LETVR ddPTM_HeLa_A485_30min_R1 2 IFSLSGTLETVR 12 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 1 0 IFSLS(0.113)GT(0.887)LETVR;IFSLS(0.005)GT(0.995)LETVR ; 231.69 4.56E-23 130433000 108826 102928 105651 104770 136277 131208 153524 187202 104707 145296 TRUE FALSE FALSE 133033.9683 114964.5342 144735.7014 110493.3198 122708.7834 138077.848 120722.3432 141290.416 125720.7345 109076.3812 1.219640465 1.053981925 1.326920639 1.012990334 1.124980331 1.265882187 1.106768871 1.29533465 1.15259356 1 16.73497922 -8.036499305 23.52819245 0.999999997 1.173717203 0.222567877 0.097924691 4513.980771 2909798.988 0.089610209 0.023137257 9.19E-09 8.036499305 0.173717206 IFSLSGT(ph)LETVR ddPTM_HeLa_A486_30min_R1 3 IFSLSGTLETVR 12 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 1 0 IFS(0.008)LS(0.258)GT(0.735)LETVR;IFSLS(0.066)GT(0.934)LETVR;IFSLS(0.002)GT(0.998)LETVR ;; 195.87 2.57E-13 149737000 231348 260195 270490 115925 332977 274020 313147 281108 231493 226073 TRUE FALSE FALSE 215131.6999 239576.2006 375230.972 269879.2585 291211.9198 240214.1984 234794.3085 217105.8449 251558.9996 169462.8493 1.269491813 1.413738773 2.214237359 1.592557069 1.718441068 1.417503597 1.385520835 1.28114124 1.48444925 1 17.37060951 -6.493563523 2.243601506 1.304579616 1.659137852 0.294500941 0.257531135 0.439958186 4.422838629 0.113956916 0.09003234 3.21E-07 6.493563523 0.354558236 IFSNALPDDLRS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 IFSNALPDDLRSPIR 15 1 Q9NSY0;E9PR11 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 IFSNALPDDLRS(1)PIR 120.11 3.70E-05 67277000 26434 37991 38582 32886 38418 36413 37043 34502 33519 49340 TRUE FALSE FALSE 32314.1521 42433.71697 52855.08733 34682.47891 34592.96903 38319.52837 29128.46044 26040.3304 40245.95585 37040.44604 0.872401808 1.145604913 1.426956017 0.936340747 0.933924203 1.034532045 0.78639605 0.703024212 1.086540799 1 15.17681385 -5.485663076 24.7759826 0.910339439 1.153649241 0.277931164 0.163483629 627.8619498 417992.7755 0.047014988 0.069710689 3.27E-06 5.485663076 0.243309802 IFSNALPDDLRS(ph)PIR ddPTM_HeLa_A486_30min_R1 2 IFSNALPDDLRSPIR 15 1 Q9NSY0;E9PR11 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 IFSNALPDDLRS(1)PIR;IFSNALPDDLRS(1)PIR ; 118.52 4.93E-05 101302000 151311 159555 125160 39127 145702 128731 130926 138485 125630 152126 TRUE FALSE FALSE 140704.8803 146911.2807 173625.3039 91089.63337 127426.6965 112849.4781 98166.93001 106954.9886 136519.7096 114032.6594 1.23389984 1.288326357 1.52259278 0.798803026 1.117457904 0.989624189 0.860866795 0.93793295 1.197198331 1 16.79908755 -5.260984164 24.99999997 0.983813809 1.342278329 0.629262419 0.127400766 26.18461498 1437999.688 0.034935517 0.056068558 5.48E-06 5.260984164 0.35846452 IFT(ph)PLLHQIELEKPKPIPYIYGSR ddPTM_HeLa_A486_30min_R1 2 IFTPLLHQIELEKPKPIPYIYGSR 24 2 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 1 0 IFT(1)PLLHQIELEKPKPIPYIYGSR;IFT(1)PLLHQIELEKPKPIPYIYGSR ; 99.871 0.0011216 42973000 20603 40449.1 20472 58960.8 55401.3 100273.8 74842.9 92929 49504 72175.4 TRUE FALSE FALSE 19158.83609 37243.766 28399.30666 137263.7221 48452.35236 87903.03807 56116.41481 71771.09533 53795.04658 54102.21006 0.354122985 0.688396388 0.52491953 2.537118576 0.895570667 1.624758729 1.037229621 1.326583429 0.994322534 1 15.72339991 -5.107723525 22.2637822 1.353587679 0.53844917 0.403842565 0.457789005 11.2206456 2306.478889 0.118015676 0.204409617 7.80E-06 5.107723525 -0.815138509 IFTEGEAQIS(ph)QMCS(ph)S(ph)RVCRTELEDLVK ddPTM_HeLa_A486_30min_R1 1 IFTEGEAQISQMCSSRVCRTELEDLVK 27 2 A0A452Q6Z9;Q9BU40-3;Q9BU40;Q9BU40-5;Q9BU40-4 A0A452Q6Z9 CHRDL1 Chordin-like protein 1 3 0 IFT(0.067)EGEAQIS(0.709)QMCS(0.77)S(0.769)RVCRT(0.684)ELEDLVK 44.615 0.021563 61704000 14906 16896 7912 5176.3 13156 17992 25195 19854 10139 28709 TRUE FALSE FALSE 13861.16637 15557.09943 10975.73829 12050.688 11505.85181 15772.32997 18890.94451 15333.67761 11017.85668 21520.07954 0.644103864 0.72291087 0.510023129 0.559974138 0.534656565 0.732912253 0.87782875 0.712528854 0.511980296 1 14.39339579 -6.363212842 6.024961091 0.758293552 0.59531342 0.309370956 0.129058495 0.335748675 16.67061996 0.04634951 0.040735789 4.33E-07 6.363212842 -0.162980132 IFTPLLHQIELEKPKPIPYIYGSR ddPTM_HeLa_A485_30min_R1 2 IFTPLLHQIELEKPKPIPYIYGSR 24 2 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 147.41 5.84E-16 103110000 100834.4 97088.3 67743.8 108188 124401 129175.8 159524.7 175565.9 81497.9 143645.6 FALSE FALSE TRUE 123264.6644 108441.9321 92805.05067 114098.0365 112015.1996 135939.2451 125440.9446 132508.0877 97853.78099 107837.3955 1.143060474 1.005606002 0.860601744 1.058056307 1.038741701 1.260594662 1.163241601 1.228776781 0.907419736 1 16.71849803 -6.022335367 23.04295407 1.131747418 1.010311141 0.121065572 0.117057897 476.2705424 491358.3603 0.038347702 0.0387088 9.50E-07 6.022335367 -0.121436277 IFTPLLHQIELEKPKPIPYIYGSR ddPTM_HeLa_A486_30min_R1 3 IFTPLLHQIELEKPKPIPYIYGSR 24 2 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ;; ;; 191.42 3.47E-21 192659000 305739 333977 192626 124180 444948 346394 417640 415263 271891 437754 FALSE FALSE TRUE 284308.2749 307511.4462 267215.9459 289097.3157 389138.4729 303659.4302 313142.0547 320716.68 295458.7308 328137.5491 0.866430178 0.9371419 0.814341262 0.881024791 1.185900467 0.925402871 0.954301193 0.977384883 0.90041122 1 18.32394117 -5.569924915 24.99991015 0.988828038 0.873852172 0.350495259 0.077283836 138.5198101 73607.41746 0.02284644 0.029494636 2.69E-06 5.569924915 -0.114975866 IFTTPLT(ph)PSQYYSGSK ddPTM_HeLa_A485_30min_R1 2 IFTTPLTPSQYYSGSK 16 0 P49454 P49454 CENPF Centromere protein F 1 0 IFT(0.001)T(0.007)PLT(0.975)PS(0.014)QY(0.002)YS(0.001)GS(0.001)K;IFTTPLT(0.991)PS(0.008)QYYSGSK ; 98.942 0.0027697 502220000 1000420 1400950 1718670 910110 1643660 1189080 1189360 1138570 1373680 977940 TRUE FALSE FALSE 1222959.978 1564778.916 2354477.553 959827.0048 1480011.439 1251338.39 935243.5198 859333.9223 1649364.976 734157.5557 1.665800438 2.131393873 3.207046682 1.307385584 2.015931632 1.704454828 1.273900286 1.17050341 2.246609005 1 19.48573018 -5.304997875 24.99996276 1.55504761 2.314413805 0.345333428 0.505995709 524.4280798 300989.1631 0.141931635 0.210520128 4.95E-06 5.304997875 0.759366195 IFTTPLT(ph)PSQYYSGSK ddPTM_HeLa_A486_30min_R1 1 IFTTPLTPSQYYSGSK 16 0 P49454 P49454 CENPF Centromere protein F 1 0 IFTTPLT(0.5)PS(0.498)QYYS(0.001)GSK 118.21 0.00043272 232700000 554890 600840 400040 175880 462770 531760 567360 536920 476660 538770 TRUE FALSE FALSE 515995.0765 553227.2502 554946.2014 409457.5285 404725.0714 466156.8577 425400.5271 414675.0369 517977.2726 403858.4852 1.277663081 1.36985422 1.374110541 1.013863874 1.002145767 1.154257927 1.05334057 1.026783024 1.282571226 1 18.62349033 -5.257254086 24.97357038 1.0764756 1.34347379 0.668497278 0.085316675 203.804229 1216091.884 0.023046415 0.038190268 5.53E-06 5.257254086 0.26699819 IFVGGLS(ph)PDTPEEK ddPTM_HeLa_A485_30min_R1 2 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IFVGGLS(0.992)PDT(0.008)PEEK;IFVGGLS(0.888)PDT(0.112)PEEK ; 180.11 2.64E-17 156145000 198374 209044 153340 279020 262440 238610 308360 336590 185937 394410 TRUE FALSE FALSE 242501.6119 233489.8774 210066.847 294262.1561 236310.5521 251103.2506 242476.3669 254040.7747 223252.8504 296090.8456 0.819010839 0.788575131 0.709467551 0.99382389 0.798101514 0.848061514 0.818925578 0.857982537 0.754001192 1 18.17568036 -11.46762588 2.217660166 2.928804044 0.822905498 0.363402022 0.071075395 2827290.353 267115.0606 27546448.07 0.017436902 3.41E-12 11.46762588 -2.105898545 IFVGGLS(ph)PDTPEEK ddPTM_HeLa_A486_30min_R1 3 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IFVGGLS(0.992)PDT(0.008)PEEK;IFVGGLS(0.997)PDT(0.003)PEEK;IFVGGLS(0.848)PDT(0.152)PEEK ;; 247.93 1.02E-35 394811000 1017180 1015320 571321 458046 982310 1098140 1349270 1365600 834250 1501500 TRUE FALSE FALSE 945880.9347 934862.3455 792551.7917 1066354.236 859099.5201 962662.6519 1011668.375 1054682.691 906563.4617 1125514.627 0.840398616 0.830608793 0.704168362 0.947437031 0.763294852 0.855308877 0.898849602 0.937067068 0.805465731 1 20.10215338 -13.7994664 0.106532032 1.501645326 0.743219175 0.35382429 0.06846571 175.8948437 1.309798297 19.38112525 0.935954673 1.59E-14 13.7994664 -0.758426151 IFVGGLSPDT(ph)PEEK ddPTM_HeLa_A485_30min_R1 1 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IFVGGLS(0.396)PDT(0.604)PEEK 198.16 4.74E-21 109540000 129050 136080 94360 184100 194310 172400 215360 213580 134470 250440 TRUE FALSE FALSE 157756.7273 151993.3723 129267.6906 194156.9168 174963.8141 181426.5974 169346.5767 161199.1701 161456.8956 188009.917 0.839087266 0.80843274 0.68755783 1.032695083 0.930609496 0.96498419 0.900732149 0.857397167 0.858767974 1 17.52044924 -5.259038531 24.99997232 0.928720048 0.781366628 0.556474695 0.063904788 174.9147109 1821371.421 0.018312226 0.029910112 5.51E-06 5.259038531 -0.14735342 IFYPEIEEVQALDDT(ph)ERGSGGFGSTGK ddPTM_HeLa_A486_30min_R1 1 IFYPEIEEVQALDDTERGSGGFGSTGK 27 1 H0YNW5;A0A0C4DGL3;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 IFYPEIEEVQALDDT(0.521)ERGS(0.454)GGFGS(0.012)T(0.012)GK 65.284 0.017274 71568000 19604 32605 19186 13407 35266 35093 37398 41455 25045 30407 TRUE FALSE FALSE 18229.86084 30021.26105 26615.33302 31212.17355 30842.60944 30763.58246 28040.62484 32016.60146 27215.92077 22792.88928 0.799804738 1.317132755 1.167703343 1.369382054 1.353168045 1.349700868 1.230235645 1.404674987 1.194053129 1 14.4762962 -4.258902189 24.77018982 1.282281801 0.799804543 0.584466068 0.116899818 130.8095914 1276986.938 0.026818938 0.17715418 5.51E-05 4.258902189 -0.482477258 IFYPEIEEVQALDDT(ph)ERGSGGFGSTGKN ddPTM_HeLa_A486_30min_R1 3 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 H0YNW5;A0A0C4DGL3;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 IFYPEIEEVQALDDT(0.525)ERGS(0.437)GGFGS(0.019)T(0.019)GKN;IFYPEIEEVQALDDT(0.499)ERGS(0.499)GGFGS(0.001)T(0.001)GKN;IFYPEIEEVQALDDT(0.551)ERGS(0.443)GGFGS(0.003)T(0.003)GKN ;; 110.31 0.0014565 563478000 59572.4 66816 51076.7 29838.5 84300 63174.7 85485 93986 57201.2 83769 TRUE FALSE FALSE 55396.68239 61521.25682 70854.96612 69465.53595 73726.30793 55380.84783 64095.74883 72587.4395 62159.44607 62792.69716 0.882215367 0.97975178 1.12839501 1.106267752 1.174122331 0.881963195 1.020751644 1.155985374 0.989915211 1 15.93830916 -4.487915852 4.010639726 1.061212212 0.893699897 0.293177162 0.084482369 0.273625274 9.263857659 0.022129739 0.091948825 3.25E-05 4.487915852 -0.167512315 IFYPEIEEVQALDDTER ddPTM_HeLa_A485_30min_R1 1 IFYPEIEEVQALDDTER 17 0 H0YNW5;A0A0C4DGL3;H0YKC5;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 138.77 0.00013979 8290600 1725.3 2116.5 2233.6 1944.6 2820.9 1821.4 2537.1 2387.4 1380.9 2008.3 FALSE FALSE TRUE 2109.087033 2364.006264 3059.901588 2050.828574 2540.041291 1916.765688 1995.027859 1801.886407 1658.033964 1507.66777 1.398907024 1.567988857 2.029559594 1.36026558 1.684748684 1.271344872 1.323254299 1.19514819 1.099734303 1 10.55810284 -6.783711416 0.804844757 1.042377591 1.641542971 0.598019799 0.181701109 0.452189967 0.572383212 0.148927029 0.088376102 1.65E-07 6.783711416 0.59916538 IFYPEIEEVQALDDTERGS(ph)GGFGSTGKN ddPTM_HeLa_A485_30min_R1 4 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 H0YNW5;A0A0C4DGL3;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 IFYPEIEEVQALDDT(0.013)ERGS(0.987)GGFGSTGKN;IFYPEIEEVQALDDT(0.228)ERGS(0.761)GGFGS(0.007)T(0.004)GKN;IFYPEIEEVQALDDT(0.045)ERGS(0.952)GGFGS(0.003)TGKN;IFYPEIEEVQALDDT(0.006)ERGS(0.967)GGFGS(0.011)T(0.015)GKN ;;; 271.58 4.55E-77 963273000 138955 147584 140375 155439 196031 185028 246751 286566 140642 192058 TRUE FALSE FALSE 169865.0604 164842.665 192305.554 163930.239 176513.4653 194715.78 194030.6331 216285.2392 168867.5594 144181.4752 1.178133739 1.143299892 1.333774355 1.136971576 1.224245106 1.350490968 1.345738992 1.500090347 1.171215367 1 17.13752629 -6.124036615 5.631132867 1.308770476 1.201276889 0.035104478 0.134030217 0.492933006 20.64530257 0.042663505 0.0428244 7.52E-07 6.124036615 -0.107493587 IFYPEIEEVQALDDTERGS(ph)GGFGSTGKN ddPTM_HeLa_A486_30min_R1 1 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 H0YNW5;A0A0C4DGL3;P33316-2;P33316 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 IFYPEIEEVQALDDT(0.031)ERGS(0.969)GGFGSTGKN 196.85 1.15E-22 388740000 26276 31303 23319 14542 36285 29764 40350 45355 23646 39217 TRUE FALSE FALSE 24434.18809 28822.43628 32348.7413 33854.51091 31733.79696 26092.0203 30254.00322 35028.65659 25695.65432 29396.80794 0.831185078 0.980461427 1.100416799 1.151639014 1.079498054 0.887580051 1.029159468 1.191580279 0.874096751 1 14.84337189 -4.348045811 3.157983695 1.045610539 0.81791523 0.292483737 0.096911318 0.357050771 5.702979689 0.024971385 0.17612594 4.49E-05 4.348045811 -0.227695308 IGAEVYHNLK ddPTM_HeLa_A485_30min_R1 4 IGAEVYHNLK 10 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;; ;;; 161.63 4.50E-06 6779630000 4805020 5388830 4515050 5379160 6679400 6149490 7568000 8515200 5109450 7128000 FALSE FALSE TRUE 5873880.122 6019006.792 6185354.882 5673009.89 6014375.483 6471467.787 5951034.975 6426833.849 6134869.748 5351120.781 1.097691561 1.12481236 1.155898948 1.060153587 1.123946876 1.209366795 1.112110008 1.20102575 1.146464451 1 22.35140966 -6.010727528 24.95320331 1.147408358 1.111280071 0.010268281 0.058874692 1365.224662 3175645.078 0.01773719 0.018840623 9.76E-07 6.010727528 -0.036128286 IGAEVYHNLK ddPTM_HeLa_A486_30min_R1 4 IGAEVYHNLK 10 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;; ;;; 161.63 4.50E-06 4640430000 7132420 7882100 5355800 2999040 9359500 7861000 9050000 9158100 6570310 8706200 FALSE FALSE TRUE 6632474.19 7257493.69 7429709.193 6981916.683 8185544.236 6891189.745 6785594.279 7073000.55 7139829.761 6526110.852 1.01629812 1.112070244 1.138458932 1.069843409 1.254276003 1.055941264 1.039760806 1.083800246 1.094040528 1 22.63779206 -8.496910886 0.542770604 0.997383506 1.108561903 0.180956134 0.062290009 3.189415141 1.700966585 0.094428926 0.030596877 3.18E-09 8.496910886 0.111178397 IGAEVYHNLK(ac)NVIK ddPTM_HeLa_A485_30min_R1 2 IGAEVYHNLKNVIK 14 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 1 ; IGAEVYHNLK(1)NVIK;IGAEVYHNLK(1)NVIK 198.33 2.08E-15 120504000 209106 226670 185223 219062 266490 261280 318820 356660 222581 319910 FALSE TRUE FALSE 255620.9083 253177.0847 253744.6955 231028.8024 239957.3199 274960.2168 250701.5025 269188.5758 267250.9651 240162.3245 1.064367231 1.054191515 1.056554961 0.96196938 0.999146391 1.144893219 1.043883561 1.120860969 1.112793048 1 17.87365032 -6.244875871 24.94940297 1.089502312 1.026744683 0.262120184 0.047645207 1058.259548 1594042.749 0.015791343 0.015746004 5.69E-07 6.244875871 -0.062757629 IGAEVYHNLK(ac)NVIK ddPTM_HeLa_A486_30min_R1 2 IGAEVYHNLKNVIK 14 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 1 ; IGAEVYHNLK(1)NVIK;IGAEVYHNLK(1)NVIK 184.98 9.24E-11 114510000 177991 190406 119006 69509 197309 192881 211620 211530 152183 212457 FALSE TRUE FALSE 165514.75 175317.5351 165088.3103 161820.4648 172560.6654 169085.3033 158670.4377 163369.2367 165374.345 159256.3843 1.039297424 1.100850907 1.036619731 1.016100331 1.083540017 1.061717582 0.996320734 1.025825353 1.038415795 1 17.28099168 -6.74639612 24.98884879 1.017292582 1.056885869 0.391373073 0.025115922 264.5041994 439376.2837 0.009854035 0.00760154 1.79E-07 6.74639612 0.039593287 IGDEYAEDS(ph)S(ph)DEEDIR ddPTM_HeLa_A485_30min_R1 4 IGDEYAEDSSDEEDIR 16 0 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 2 0 IGDEYAEDS(1)S(1)DEEDIR;IGDEYAEDS(1)S(1)DEEDIR;IGDEYAEDS(1)S(1)DEEDIR;IGDEYAEDS(1)S(1)DEEDIR ;;; 256.08 3.24E-50 2159640000 1017693 1141938 886767 1215688 1077049 937807 1129016 998896 891670 1479225 TRUE FALSE FALSE 1244075.297 1275477.716 1214819.015 1282097.957 969814.2198 986909.1244 887792.5084 753915.1898 1070619.99 1110481.431 1.120302657 1.148580859 1.093957072 1.154542455 0.873327724 0.888721862 0.799466325 0.678908417 0.964104361 1 20.08275384 -5.793469864 6.142005784 0.847353345 1.128597064 0.692478126 0.084930345 0.094230145 10.23087813 0.026091385 0.030414443 1.61E-06 5.793469864 0.281243719 IGDEYAEDS(ph)S(ph)DEEDIR ddPTM_HeLa_A486_30min_R1 3 IGDEYAEDSSDEEDIR 16 0 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 2 0 IGDEYAEDS(1)S(1)DEEDIR;IGDEYAEDS(1)S(1)DEEDIR;IGDEYAEDS(1)S(1)DEEDIR ;; 294.05 3.77E-67 1863350000 1254553 1334269 863850 429799 1081517 1290340 1296160 1225218 1091362 1394650 TRUE FALSE FALSE 1166615.313 1228536.665 1198355.855 1000593.793 945863.0531 1131150.97 971847.0586 946262.6077 1185962.137 1045420.562 1.115929182 1.175160227 1.146290687 0.957120827 0.904767983 1.082005664 0.929623057 0.905150178 1.134435441 1 19.99565201 -5.255604904 24.29077953 0.981702346 1.148730074 0.508235671 0.071132972 246.3469457 1025614.985 0.019043077 0.031847805 5.55E-06 5.255604904 0.167027728 IGDGLS(ph)PLPHLTESSSFLSTVTSVSR ddPTM_HeLa_A485_30min_R1 2 IGDGLSPLPHLTESSSFLSTVTSVSR 26 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 IGDGLS(1)PLPHLTESSSFLSTVTSVSR;IGDGLS(1)PLPHLTESSSFLSTVTSVSR ; 126.18 6.49E-06 84028000 21033.3 30207.7 24479.3 14063.7 37611.4 30590 33660.9 37867 27692.1 30787.4 TRUE FALSE FALSE 25712.08502 33740.22774 33535.21174 14831.96432 33866.67695 32191.6451 26468.97373 28580.05888 33249.65046 23112.66778 1.112467209 1.459815373 1.450945086 0.641724463 1.465286365 1.392813906 1.145214996 1.236553874 1.438589901 1 14.49639617 -10.15317579 4.894368475 0.999981403 1.25948787 0.094321415 0.24203808 4.86E-05 8.41E-06 0.231844314 0.056226479 7.03E-11 10.15317579 0.259506467 IGEEQS(ph)AEDAEDGPPELLFIHGGHTAK ddPTM_HeLa_A485_30min_R1 6 IGEEQSAEDAEDGPPELLFIHGGHTAK 27 0 Q16576;E9PC52;Q16576-2;Q5JNZ6 Q16576 RBBP7 Histone-binding protein RBBP7 1 0 IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK ;;;;; 255 4.58E-63 1784680000 693563 477096 389147 959770 771877 731515 1137023 1105287 574546 1345520 TRUE FALSE FALSE 847843.6966 532888.227 533108.6691 1012199.805 695026.2157 769815.9943 894088.7474 834213.6302 689852.1122 1010106.626 0.839360593 0.527556411 0.527774648 1.002072235 0.688072128 0.762113597 0.885142938 0.825866902 0.682949794 1 19.94607616 -13.99999997 0.048704787 2.015712614 0.230950581 0.235274229 0.140893832 834.1643077 3.002059084 112.0546714 25.98355441 1.00E-14 13.99999997 -1.784762033 IGEEQS(ph)AEDAEDGPPELLFIHGGHTAK ddPTM_HeLa_A486_30min_R1 4 IGEEQSAEDAEDGPPELLFIHGGHTAK 27 0 Q16576;E9PC52;Q16576-2;Q5JNZ6 Q16576 RBBP7 Histone-binding protein RBBP7 1 0 IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK ;;; 238.36 6.96E-50 1576248000 414401 473802 282595 305116 536301 628340 838487 809993 403387 769847 TRUE FALSE FALSE 385353.6299 436256.204 392023.3522 710325.4677 469033.1278 550821.7993 628688.684 625575.2759 438352.91 577072.3003 0.66777357 0.755981883 0.679331432 1.23091243 0.812780526 0.954510897 1.089445263 1.084050084 0.759615233 1 19.13839256 -5.226592393 24.85864372 0.988947119 0.706524149 0.511917862 0.129350155 466.807803 333004.06 0.034052209 0.058976979 5.93E-06 5.226592393 -0.282422969 IGEGT(ph)YGVVYK ddPTM_HeLa_A485_30min_R1 4 IGEGTYGVVYK 11 0 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2;G3V317;K7ELV5;G3V5T9;P24941;E7ESI2;P24941-2;Q00526 E5RIU6;G3V5T9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 IGEGT(0.604)Y(0.396)GVVYK;IGEGT(0.98)Y(0.02)GVVYK;IGEGT(0.918)Y(0.082)GVVYK;IGEGT(0.972)Y(0.028)GVVYK ;;; 204.09 4.36E-14 69617400000 10821040 9806610 6628110 13937130 13395480 11065490 17312650 15714460 8842630 18125840 TRUE FALSE FALSE 13228143.02 10953407.73 9080123.708 14698480.12 12061778.98 11644861.95 13613660.9 11860464.05 10617264.73 13607401.67 0.972128503 0.804959536 0.667292987 1.080182718 0.886413091 0.855774102 1.000459987 0.871618574 0.780256583 1 23.69788828 -5.256277664 24.98995405 0.91826587 0.813810281 0.182950401 0.10602174 795.9572398 3853538.59 0.029143504 0.048590814 5.54E-06 5.256277664 -0.104455589 IGEGT(ph)YGVVYK ddPTM_HeLa_A486_30min_R1 2 IGEGTYGVVYK 11 0 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2;G3V317;K7ELV5;G3V5T9;P24941;E7ESI2;P24941-2;Q00526 E5RIU6;G3V5T9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 IGEGT(0.623)Y(0.376)GVVYK;IGEGT(0.992)Y(0.008)GVVYK ; 197.3 6.97E-14 9009330000 789810 862630 494120 392590 784426 857263 1089793 1079948 587166 1028600 TRUE FALSE FALSE 734448.3976 794272.0572 685456.497 913969.3604 686035.9766 751502.6071 817115.2647 834067.4155 638062.0216 771031.8649 0.952552587 1.030141675 0.889011892 1.18538468 0.889763456 0.97467127 1.059768476 1.081754793 0.827542999 1 19.55643096 IGEGTY(ph)GVVYK ddPTM_HeLa_A485_30min_R1 5 IGEGTYGVVYK 11 0 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2;G3V317;K7ELV5;G3V5T9;P24941;E7ESI2;P24941-2;Q00526 E5RIU6;G3V5T9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 IGEGT(0.021)Y(0.979)GVVYK;IGEGT(0.033)Y(0.967)GVVYK;IGEGT(0.308)Y(0.692)GVVYK;IGEGT(0.025)Y(0.975)GVVYK;IGEGT(0.446)Y(0.554)GVVYK ;;;; 185.81 1.15E-10 42302367000 3317902 3428450 2665953 4630980 4404433 3774224 5927261 5942742 3108169 5975010 TRUE FALSE FALSE 4055957.853 3829377.404 3652199.954 4883958.711 3965912.186 3971836.533 4660853.266 4485275.207 3731950.008 4485549.969 0.904227549 0.853714133 0.814214529 1.088820489 0.884152938 0.885473701 1.039081784 0.999938745 0.831993855 1 22.09685345 -5.215452097 24.99935044 0.95820986 0.857018267 0.281131477 0.076068657 583.6460075 317277.5438 0.020503113 0.035512278 6.09E-06 5.215452097 -0.101191593 IGEGTY(ph)GVVYK ddPTM_HeLa_A486_30min_R1 6 IGEGTYGVVYK 11 0 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2;G3V317;K7ELV5;G3V5T9;P24941;E7ESI2;P24941-2;Q00526 E5RIU6;G3V5T9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 IGEGT(0.436)Y(0.564)GVVYK;IGEGT(0.486)Y(0.513)GVVYK;IGEGT(0.057)Y(0.943)GVVYK;IGEGT(0.022)Y(0.978)GVVYK;IGEGT(0.013)Y(0.986)GVVY(0.001)K;IGEGT(0.225)Y(0.775)GVVYK ;;;;; 207.68 5.19E-15 1.12E+11 7138154 7994965 3949517 3294594 7557351 8002609 10727060 10077239 5806775 9663590 TRUE FALSE FALSE 6637806.266 7361414.856 5478875.754 7669981.332 6609437.568 7015328.466 8043036.129 7782871.664 6310110.932 7243764.165 0.91634765 1.016241651 0.756357555 1.058839183 0.912431357 0.968464504 1.110339313 1.074423668 0.871109383 1 22.78830815 -6.531206368 24.84559494 1.022917481 0.934649315 0.141193823 0.094108101 334.9882895 999431.3446 0.034961099 0.027129508 2.94E-07 6.531206368 -0.088268167 IGEGTYGVVY(ph)KGR ddPTM_HeLa_A485_30min_R1 1 IGEGTYGVVYKGR 13 1 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 1 0 IGEGTYGVVY(1)KGR 63.091 0.016566 111020000 53182 62971 46495 56623 80114 67536 88198 107350 59611 73721 TRUE FALSE FALSE 65012.15242 70334.91068 63695.43532 59716.17111 72137.56886 71072.08053 69353.77679 81022.24418 71574.38092 55343.71143 1.174698096 1.270874483 1.150906466 1.079005538 1.303446534 1.284194332 1.253146473 1.463982846 1.293270347 1 15.75613178 -5.792682116 24.96675852 1.289772318 1.174873842 0.125537211 0.116133732 329.7319887 263494.3227 0.035088471 0.039790442 1.61E-06 5.792682116 -0.114898476 IGEHTPS(ph)ALAIMENANVLAR ddPTM_HeLa_A485_30min_R1 1 IGEHTPSALAIMENANVLAR 20 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BR04;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 IGEHT(0.199)PS(0.801)ALAIMENANVLAR 59.579 0.014713 24454000 23103 32685 43397 21191 41216 31800 32303 43399 33326 30012 TRUE FALSE FALSE 28242.18265 36507.22643 59451.3562 22348.61067 37112.39032 33464.99883 25401.20016 32755.3272 40014.22252 22530.56073 1.253505538 1.620342559 2.638698473 0.9919243 1.64720225 1.485315844 1.127410918 1.453817666 1.775997633 1 14.4595956 -5.347251479 24.90817754 1.381615868 1.816235663 0.228113552 0.404431565 122.6682614 35603.5939 0.113503574 0.168353024 4.50E-06 5.347251479 0.434619795 IGEHTPS(ph)ALAIMENANVLAR ddPTM_HeLa_A486_30min_R1 2 IGEHTPSALAIMENANVLAR 20 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BR04;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 IGEHT(0.126)PS(0.874)ALAIMENANVLAR;IGEHT(0.19)PS(0.81)ALAIMENANVLAR ; 121.25 3.14E-06 35702000 66857 66048 82461 20590.7 86517 52158 55767 62109 70194 68252 TRUE FALSE FALSE 62170.66955 60814.11594 114392.1076 47936.1902 75665.23112 45723.27626 41813.50676 47968.13653 76278.47244 51161.25495 1.215190472 1.188675219 2.235912854 0.936962751 1.478955729 0.893709044 0.817288528 0.937587176 1.490942169 1 15.64276403 -5.883359513 1.745920839 1.025610047 1.473209668 0.195949291 0.364287256 0.560854848 3.51497029 0.134507595 0.162281644 1.31E-06 5.883359513 0.447599621 IGEHTPSALAIMENANVLAR ddPTM_HeLa_A485_30min_R1 3 IGEHTPSALAIMENANVLAR 20 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BR04;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;; ;; 284.38 2.79E-72 738983000 581844 605059 606657 628156 809722 692028 915583 948844 583980 882209 FALSE FALSE TRUE 711273.1905 675815.3867 831084.6694 662470.5717 729103.2346 728261.516 719961.2124 716138.5213 701179.4294 662290.5322 1.073959472 1.020421332 1.254864186 1.000271844 1.100881259 1.099610338 1.087077615 1.081305691 1.058718788 1 19.33710471 -8.19043831 1.22731434 0.999991872 1.092214065 0.158758983 0.06367258 1.380577504 4.135886216 0.058467684 0.017967973 6.45E-09 8.19043831 0.092222193 IGEHTPSALAIMENANVLAR ddPTM_HeLa_A486_30min_R1 2 IGEHTPSALAIMENANVLAR 20 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BR04;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 287.54 1.05E-72 550370000 499170 563330 412660 211289 694950 595020 683770 636450 506440 638590 FALSE FALSE TRUE 464180.7607 518689.6792 572453.0034 491891.47 607782.8908 521612.4821 512683.5138 491544.2286 550338.627 478682.9075 0.969704064 1.083576771 1.195891883 1.027593554 1.269698335 1.089682698 1.071029497 1.026868144 1.149693499 1 18.86871077 -9.39515767 8.43764146 1.000013114 1.100457536 0.110811622 0.083224058 0 0 0.079366646 0.019249239 4.03E-10 9.39515767 0.100444422 IGELGAPEVWGLS(ph)PK ddPTM_HeLa_A485_30min_R1 4 IGELGAPEVWGLSPK 15 0 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK ;;; 293.42 3.65E-67 5466400000 1188070 852484 618423 2443830 1272930 957988 1751210 1430410 842538 2931910 TRUE FALSE FALSE 1452352.073 952174.5882 847203.4024 2577330.245 1146192.62 1008146.77 1377049.677 1079599.705 1011627.648 2201038.795 0.659848466 0.432602365 0.384910709 1.170960844 0.520750757 0.458032259 0.625636259 0.490495537 0.459613729 1 21.06975314 -11.33992878 2.357341984 3.663564692 0.579174749 0.25898584 0.214090495 14146406.15 1138250.138 202730806 0.054670416 4.57E-12 11.33992878 -3.084389943 IGELGAPEVWGLS(ph)PK ddPTM_HeLa_A486_30min_R1 6 IGELGAPEVWGLSPK 15 0 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK ;;;;; 252.1 1.01E-42 3513259000 1681623 1561600 640717 1229444 1131849 1904929 2539056 2129902 1125160 3284758 TRUE FALSE FALSE 1563749.912 1437853.129 888819.7814 2862207.765 989881.9443 1669918.228 1903757.333 1644969.81 1222689.775 2462233.217 0.63509415 0.583963013 0.360981151 1.162443811 0.40202607 0.678212858 0.77318319 0.668080423 0.496577565 1 21.23153599 -10.69257986 2.704239775 1.052381334 0.644428741 0.205068718 0.212443616 54965708.68 46805568.27 19678891.65 0.052411964 2.03E-11 10.69257986 -0.407952593 IGEVSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 IGEVSSPK 8 0 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 0 IGEVS(0.183)S(0.817)PK;IGEVS(0.285)S(0.715)PK ; 78.098 0.010625 503470000 1541890 1037190 670360 3207700 1664010 1097700 2094480 1849350 1168040 4748100 TRUE FALSE FALSE 1884878.111 1158480.348 918354.06 3382928.529 1498335.322 1155173.875 1646977.238 1395794.013 1402454.914 3564486.052 0.528793796 0.325006279 0.257639965 0.94906488 0.420351013 0.324078663 0.462051812 0.391583525 0.39345221 1 21.76526265 -10.72162988 2.740112876 1.095032508 0.449583603 0.450805232 0.182042277 42850202.23 35770453.59 27873205.19 0.04791253 1.90E-11 10.72162988 -0.645448905 IGEVSS(ph)PK ddPTM_HeLa_A486_30min_R1 3 IGEVSSPK 8 0 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 0 IGEVS(0.163)S(0.837)PK;IGEVS(0.193)S(0.807)PK;IGEVS(0.134)S(0.866)PK ;; 85.29 0.0051353 1097069000 2978020 2986480 1158760 2064790 2032980 3564150 4770850 3647850 2383490 5531020 TRUE FALSE FALSE 2769276.177 2749820.448 1607462.905 4806935.469 1777984.692 3124441.411 3577132.869 2817314.187 2590092.832 4146016.591 0.667936588 0.663243957 0.387712608 1.159410572 0.428841673 0.753600798 0.862787881 0.679523134 0.624718395 1 21.98329446 -14 0.240004908 2.705857404 0.665062306 0.166067809 0.205166908 315.0755539 3.145528088 263.0266642 0.313637851 1.00E-14 14 -2.040795098 IGFPS(ph)TTPAK ddPTM_HeLa_A486_30min_R1 1 IGFPSTTPAK 10 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 IGFPS(0.333)T(0.333)T(0.333)PAK 123.62 0.00012532 213310000 652610 746670 410580 320470 733780 776830 981700 964470 534160 857310 TRUE FALSE FALSE 606865.4091 687501.1499 569567.5717 746070.3557 641742.4702 680992.6128 736068.2766 744881.2352 580461.4189 642633.9958 0.944340656 1.069817586 0.886301651 1.160956875 0.998612701 1.059689679 1.145392683 1.15910649 0.90325352 1 19.29363778 -5.260813597 24.99969471 1.068493223 0.977119732 0.187680507 0.088059856 96.0518488 3837132.529 0.023628024 0.037950387 5.49E-06 5.260813597 -0.09137349 IGFPSTS(ph)PAK ddPTM_HeLa_A485_30min_R1 4 IGFPSTSPAK 10 0 Q9UDT6;Q9UDT6-2 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 IGFPS(0.184)T(0.075)S(0.741)PAK;IGFPS(0.376)T(0.085)S(0.539)PAK;IGFPS(0.334)T(0.132)S(0.534)PAK;IGFPS(0.191)T(0.06)S(0.748)PAK ;;; 170.02 2.84E-07 1798300000 4266850 3899080 2969650 5987800 5437600 4552640 6818200 6814800 3584460 7631400 TRUE FALSE FALSE 5215996.062 4355043.489 4068247.112 6314898.352 4896213.451 4791009.191 5361435.87 5143459.615 4303828.243 5729032.426 0.910449736 0.760170857 0.71011068 1.102262631 0.854631827 0.836268472 0.935836189 0.897788533 0.751231259 1 22.44986007 -11.58583751 2.256216293 3.854771595 0.863921171 0.131096421 0.106424671 3577598.749 633738.8357 52532351.69 0.027527017 2.60E-12 11.58583751 -2.990850424 IGFPSTS(ph)PAK ddPTM_HeLa_A486_30min_R1 4 IGFPSTSPAK 10 0 Q9UDT6;Q9UDT6-2 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 IGFPS(0.022)T(0.005)S(0.973)PAK;IGFPS(0.009)T(0.021)S(0.971)PAK;IGFPS(0.062)T(0.062)S(0.876)PAK;IGFPS(0.01)T(0.02)S(0.97)PAK ;;; 197.94 1.10E-13 2270420000 6318170 6176430 3331950 3093060 6004410 7003780 8722700 8305480 4785860 9499400 TRUE FALSE FALSE 5875298.91 5686987.193 4622170.273 7200799.995 5251280.909 6139724.833 6540188.201 6414503.511 5200702.198 7120688.409 0.825102655 0.798656937 0.649118457 1.011250539 0.73746815 0.862237537 0.918476954 0.900826317 0.730365085 1 22.76358529 -14 0.117718253 1.51769662 0.747356344 0.206961488 0.099988002 249.5328402 1.912649797 31.33392868 1.004048569 1.00E-14 14 -0.770340277 IGFPSTT(ph)PAK ddPTM_HeLa_A485_30min_R1 3 IGFPSTTPAK 10 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 IGFPS(0.067)T(0.035)T(0.897)PAK;IGFPS(0.018)T(0.018)T(0.964)PAK;IGFPS(0.162)T(0.162)T(0.676)PAK ;; 108.7 0.0039277 907740000 1854410 1598270 1201840 2193090 2310280 1855480 2616340 2868770 1435270 2545940 TRUE FALSE FALSE 2266917.107 1785173.773 1646450.629 2312892.954 2080260.411 1952630.064 2057337.585 2165199.659 1723315.524 1911284.013 1.18607025 0.934018054 0.861436928 1.210125203 1.088409884 1.021632604 1.076416468 1.132850819 0.901653293 1 20.86611074 -4.232030096 22.97503512 1.033453185 1.186070962 0.178955418 0.10201273 6914.356987 5401354.888 0.025998407 2.315632619 5.86E-05 4.232030096 0.152617776 IGFPSTT(ph)PAK ddPTM_HeLa_A486_30min_R1 3 IGFPSTTPAK 10 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 IGFPS(0.103)T(0.103)T(0.795)PAK;IGFPS(0.011)T(0.011)T(0.978)PAK;IGFPS(0.059)T(0.059)T(0.882)PAK ;; 118.4 0.0016762 859590000 2529690 2708060 1691300 1239730 2767340 3107530 3672000 3611200 2040280 3216510 TRUE FALSE FALSE 2352371.794 2493463.463 2346216.655 2886154.092 2420234.413 2724154.544 2753226.762 2789008.592 2217133.113 2411074.96 0.9756527 1.034170859 0.973099839 1.197040383 1.003798908 1.129850622 1.141908405 1.156749018 0.919562083 1 21.20124507 -5.191865861 24.99999037 1.086628305 0.998293986 0.176813765 0.081696198 270.1479305 97071.74224 0.021283802 0.036864622 6.43E-06 5.191865861 -0.088334319 IGFPWSEIR ddPTM_HeLa_A485_30min_R1 2 IGFPWSEIR 9 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;E7EQR4;P15311;P26038 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 ; ; 137.62 0.0071794 133367000 101722 123483 116918 91162 140365 133039 153053 165077 121470 146045 FALSE FALSE TRUE 124349.708 137923.2627 160170.8336 96141.94923 126389.7677 140004.7163 120351.9762 124591.6069 145847.9148 109638.6693 1.134177465 1.257980087 1.460897279 0.876898177 1.152784584 1.276964754 1.097714675 1.136383794 1.330259805 1 16.7423972 -11.33858002 2.135486182 0.000230145 1.189170744 0.130763918 0.148053036 2936488.291 360327.0195 14220524.13 0.037829615 4.59E-12 11.33858002 1.188940599 IGFPWSEIR ddPTM_HeLa_A486_30min_R1 1 IGFPWSEIR 9 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;E7EQR4;P15311;P26038 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 148.04 0.003677 68975000 52776 67546 61064 27140 92615 55560 72386 72258 59052 71929 FALSE FALSE TRUE 49076.67494 62193.40896 84709.61615 63183.29158 80998.3631 48705.57209 54274.25718 55806.43078 64170.67491 53917.51022 0.910217752 1.153491856 1.571096584 1.171851061 1.502264529 0.903334963 1.006616532 1.035033527 1.190163912 1 15.71846626 -6.278589405 24.99834601 1.027943559 1.267955844 0.287933122 0.184455496 1131.146097 1648784.333 0.06638455 0.058686114 5.27E-07 6.278589405 0.240012285 IGGDAATTVNNS(ph)TPDFGFGGQKR ddPTM_HeLa_A486_30min_R1 2 IGGDAATTVNNSTPDFGFGGQKR 23 1 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 IGGDAATTVNNS(0.917)T(0.083)PDFGFGGQKR;IGGDAATTVNNS(0.765)T(0.235)PDFGFGGQKR ; 181.35 5.82E-21 411010000 288030 240984 163266 96121 286160 221155 288230 295450 164259 311550 TRUE FALSE FALSE 267840.5844 221887.5502 226486.9676 223774.5457 250267.1445 193871.1446 216111.8054 228182.4846 178497.1024 233535.8521 1.146892787 0.950121997 0.969816692 0.958202107 1.071643357 0.830155811 0.925390271 0.977076892 0.764324196 1 17.83328452 -6.259179029 24.98064989 0.899581793 1.009342866 0.335160738 0.083878553 259.5398194 2868357.475 0.027488134 0.026236823 5.51E-07 6.259179029 0.109761073 IGGDAATTVNNST(ph)PDFGFGGQKR ddPTM_HeLa_A485_30min_R1 2 IGGDAATTVNNSTPDFGFGGQKR 23 1 A0A087WTP3;Q92945;M0R0I5 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 IGGDAATTVNNS(0.174)T(0.826)PDFGFGGQKR;IGGDAATTVNNS(0.345)T(0.655)PDFGFGGQKR ; 191.09 3.22E-21 390040000 227475 333960 214769 193212 355280 361810 444440 587990 246550 278940 TRUE FALSE FALSE 278076.029 373013.7169 294220.9904 203766.6823 319907.0757 380753.8121 349481.7633 443784.5306 296030.3235 209405.3915 1.327931564 1.781299489 1.405030636 0.97307276 1.527692642 1.818261743 1.66892438 2.119260289 1.413670973 1 17.67593906 -6.000759375 24.99998277 1.677471759 1.384318695 0.079582123 0.327712722 55.53308038 1828358.551 0.100669603 0.112795083 9.98E-07 6.000759375 -0.293153064 IGGIGTVPVGR ddPTM_HeLa_A485_30min_R1 4 IGGIGTVPVGR 11 0 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 0 0 ;;; ;;; 159.58 2.17E-05 1481470000 741280 964000 972330 837670 1265620 931180 1127280 1255320 913960 1055410 FALSE FALSE TRUE 906175.1786 1076731.414 1332035.329 883429.791 1139610.429 979935.1449 886427.419 947450.8017 1097383.389 792315.7104 1.143704671 1.358967644 1.681192625 1.11499719 1.438328704 1.236798832 1.118780566 1.19579959 1.385032979 1 19.59571588 -6.458787599 6.480250625 1.189241635 1.352998443 0.183379495 0.171660257 0.436149114 35.70850078 0.060832608 0.0530497 3.48E-07 6.458787599 0.163756808 IGGIGTVPVGR ddPTM_HeLa_A486_30min_R1 4 IGGIGTVPVGR 11 0 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 0 0 ;;; ;;; 150.36 2.80E-05 805520000 716076 730843 622705 360005 1530900 689562 779009 808954 571983 732935 FALSE FALSE TRUE 665882.7702 672928.339 863833.0526 838109.8336 1338880.247 604490.8514 584092.7087 624772.8335 621562.947 549403.3054 1.212010856 1.224834893 1.57231135 1.525491065 2.43697159 1.100267955 1.063140143 1.137184337 1.131341841 1 19.06750606 -6.451362033 24.99992942 1.092514156 1.588737045 0.389377915 0.317969158 177.0436584 61888.26708 0.118418907 0.10443562 3.54E-07 6.451362033 0.496222889 IGHHS(ph)TSDDS(ph)SAYRSVDEVNYWDK ddPTM_HeLa_A485_30min_R1 1 IGHHSTSDDSSAYRSVDEVNYWDK 24 1 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 2 0 IGHHS(0.549)T(0.139)S(0.312)DDS(0.407)S(0.305)AY(0.213)RS(0.075)VDEVNYWDK 215.86 1.71E-37 207190000 128750 128990 99377 93159 135930 134040 154000 150130 115360 202890 TRUE FALSE FALSE 157389.9933 144074.2584 136140.6877 98248.04028 122396.3319 141058.1271 121096.6419 113310.3821 138511.6939 152313.2569 1.03333089 0.945907542 0.893820344 0.645039324 0.803582921 0.926105383 0.795049915 0.743929875 0.909386987 1 17.21668199 -4.73358972 2.611834717 0.820550128 1.012577274 0.296507539 0.096047695 0.316532065 4.227245026 0.02571429 0.085639421 1.85E-05 4.73358972 0.192027146 IGHHS(ph)TSDDSSAY(ph)RSVDEVNYWDK ddPTM_HeLa_A486_30min_R1 1 IGHHSTSDDSSAYRSVDEVNYWDK 24 1 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 2 0 IGHHS(0.381)T(0.287)S(0.331)DDS(0.214)S(0.174)AY(0.332)RS(0.28)VDEVNYWDK 161.5 1.05E-12 382770000 157450 170980 99780 13712 136260 117100 149430 139310 116420 89183 TRUE FALSE FALSE 146413.5681 157430.9221 138417.4882 31922.22897 119169.0002 102653.3926 112041.0335 107592.1541 126511.3793 66850.99632 2.190147883 2.354952518 2.070537402 0.477513137 1.782606196 1.535555164 1.675981506 1.60943232 1.892438203 1 16.02866144 -5.02062796 24.75482847 1.464315559 2.257599162 0.453731466 0.394832834 584.9343783 701958.9188 0.105499814 0.185612565 9.54E-06 5.02062796 0.793283603 IGHHS(ph)TSDDSSAYR ddPTM_HeLa_A485_30min_R1 1 IGHHSTSDDSSAYR 14 0 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 IGHHS(0.829)T(0.17)S(0.001)DDSSAYR 144.15 6.82E-08 2125100000 1309400 1640300 1293500 1201900 1542600 1401300 2063100 2082700 1318000 2001600 TRUE FALSE FALSE 1600671.513 1832118.816 1772019.477 1267556.754 1389013.328 1474669.901 1622301.831 1571914.559 1582510.511 1502637.957 1.065240969 1.219268293 1.179272405 0.843554329 0.92438323 0.981387363 1.079635866 1.046103323 1.053154889 1 20.51906602 -5.225640485 24.99072541 0.992340259 1.161061389 0.512845255 0.073515108 514.8015023 359375.4099 0.021667794 0.037528186 5.95E-06 5.225640485 0.16872113 IGHHS(ph)TSDDSSAYR ddPTM_HeLa_A486_30min_R1 2 IGHHSTSDDSSAYR 14 0 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 IGHHS(0.765)T(0.191)S(0.038)DDS(0.003)S(0.003)AYR;IGHHS(0.983)T(0.017)SDDSSAYR ; 181.51 1.77E-17 4071000000 3884500 4183600 2818600 1269440 4022500 3644300 3981400 4135300 3427000 4288200 TRUE FALSE FALSE 3612216.61 3852076.3 3910037.405 2955320.474 3517960.542 3194703.319 2985211.609 3193782.463 3724055.119 3214406.809 1.123758387 1.19837859 1.216410255 0.919398399 1.094435381 0.993870256 0.928697513 0.993583779 1.158551279 1 21.61612109 -5.249288408 24.99697982 1.011508197 1.181402039 0.541764788 0.070314871 577.1687735 1187349.713 0.019087157 0.032746641 5.63E-06 5.249288408 0.169893842 IGHHS(ph)TSDDSSAYRS(ph)VDEVNYWDKQDHPISR ddPTM_HeLa_A486_30min_R1 1 IGHHSTSDDSSAYRSVDEVNYWDKQDHPISR 31 2 F5H5P2;P12694;P12694-2 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 2 0 IGHHS(0.997)T(0.003)SDDS(0.113)S(0.095)AYRS(0.792)VDEVNYWDKQDHPISR 155.23 3.86E-10 381090000 137660 106190 87383 27430 158720 97493 136240 150260 77988 72324 TRUE FALSE FALSE 128010.7449 97775.11766 121220.0378 63858.42624 138811.8576 85465.3049 102151.311 116049.0782 84748.06263 54213.59965 2.361229391 1.803516429 2.235971022 1.177904191 2.560461923 1.576455086 1.88423775 2.140589795 1.563225153 1 15.72636718 -10.99716785 0.281546921 4.76E-12 2.01905679 0.363393285 0.385158852 34.76025508 1.481836823 23.18279161 0.440308792 1.01E-11 10.99716785 2.01905679 IGHPAPNFK ddPTM_HeLa_A485_30min_R1 4 IGHPAPNFK 9 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 144.38 0.00011551 2082260000 3503670 4069860 3428200 3786970 4873500 4630690 5577060 6081750 3692970 5104530 FALSE FALSE TRUE 4283049.304 4545794.724 4696433.839 3993842.582 4388277.228 4873145.768 4385475.571 4590191.277 4434115.205 3832064.613 1.117687131 1.186252108 1.225562279 1.042216921 1.145146982 1.271676305 1.144415873 1.197837652 1.157108675 1 21.86969046 -8.055897222 21.03132451 0.999999999 1.167581327 0.41540239 0.058912818 2673.044644 1005732.843 0.05758905 0.014869429 8.79E-09 8.055897222 0.167581328 IGHPAPNFK ddPTM_HeLa_A486_30min_R1 4 IGHPAPNFK 9 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 119.27 0.0017283 1528394000 3005710 3075850 2199706 1289404 5800970 3080390 3602340 3617710 2651190 3374480 FALSE FALSE TRUE 2795025.251 2832108.444 3051491.073 3001797.675 5073358.251 2700362.801 2700996.43 2794036.407 2880997.284 2529488.244 1.104976573 1.119636927 1.206366972 1.186721339 2.005685641 1.067553015 1.067803512 1.104585646 1.138964489 1 21.2704141 IGIEIIK ddPTM_HeLa_A485_30min_R1 2 IGIEIIK 7 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 119.89 0.010572 131026000 303460 239560 217400 388710 295860 270880 319880 246420 270550 610030 FALSE FALSE TRUE 370963.6301 267574.4581 297825.3068 409944.243 266403.1396 285062.8579 251535.0248 185985.1086 324846.9034 457960.7478 0.810033681 0.584273782 0.650329331 0.895151484 0.581716099 0.622461334 0.549250184 0.406115829 0.709333507 1 18.80486442 -8.024285884 24.21008934 1.000000009 0.634269588 0.417938088 0.128020942 1535.267246 1530474.837 0.128707395 0.033232107 9.46E-09 8.024285884 -0.365730421 IGIEIIK ddPTM_HeLa_A486_30min_R1 2 IGIEIIK 7 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 108.09 0.022597 105472000 114764 147669 96441 47787 145087 158414 148200 151819 153301 158181 FALSE FALSE TRUE 106719.6362 135967.1706 133785.538 111250.551 126888.8356 138870.4913 111118.7925 117253.1279 166589.2541 118571.448 0.900044977 1.14671089 1.128311581 0.938257505 1.070146631 1.171196723 0.937146289 0.988881639 1.404969383 1 16.85539713 IGIEIIKR ddPTM_HeLa_A485_30min_R1 3 IGIEIIKR 8 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;; ;; 162.25 7.02E-05 856200000 823900 1018080 685290 792080 1066000 1106640 1250750 1474720 733920 1215800 FALSE FALSE TRUE 1007173.713 1137135.6 938807.2883 835349.3247 959865.297 1164581.959 983517.0448 1113042.608 881211.0121 912723.4351 1.103481815 1.245870935 1.028578047 0.915227212 1.051649667 1.275941774 1.077563046 1.21947412 0.965474292 1 19.79981825 -7.791782564 24.99973208 0.98273686 1.111606383 0.205373814 0.103702861 410.9766185 338592.9681 0.105668259 0.027296435 1.62E-08 7.791782564 0.128869523 IGIEIIKR ddPTM_HeLa_A486_30min_R1 3 IGIEIIKR 8 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;; ;; 147.29 0.00015507 550250000 906720 902230 665330 381860 1364720 858000 1043560 1085130 799480 1084970 FALSE FALSE TRUE 843163.6103 830734.0089 922963.5942 888989.3781 1193544.092 752148.6835 782450.2503 838069.5872 868779.5701 813286.45 1.036736331 1.021453153 1.134856721 1.093082736 1.467556839 0.924826282 0.962084454 1.030472827 1.068233179 1 19.63340405 IGIHHKNS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 IGIHHKNSPPK 11 1 A0A2R8YFF1;Q8N302 A0A2R8YFF1 AGGF1 Angiogenic factor with G patch and FHA domains 1 1 0 IGIHHKNS(1)PPK 94.717 0.0012705 485700000 1033400 858740 274700 523020 578730 990330 1207100 1074200 676630 1713900 TRUE FALSE FALSE 960963.9965 790690.3149 381071.1967 1217616.992 506140.287 868153.1535 905070.8126 829628.1096 735280.8332 1284728.284 0.747990068 0.615453341 0.296616181 0.947762268 0.393966797 0.675748455 0.704484227 0.645761535 0.572324002 1 20.29303184 -13.99999856 0.412177274 7.649166155 0.613522608 0.302733945 0.171347353 1045.132243 7.0256918 6276.71448 0.098886062 1.00E-14 13.99999856 -7.035643547 IGLFADIELS(ph)R ddPTM_HeLa_A485_30min_R1 4 IGLFADIELSR 11 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;Q5TBN3;P13796 P13797-3 PLS3;LCP1 Plastin-3;Plastin-2 1 0 IGLFADIELS(1)R;IGLFADIELS(1)R;IGLFADIELS(1)R;IGLFADIELS(1)R ;;; 63.283 0.015849 1082300000 730500 1043460 974410 668980 1216330 948740 1121070 1270100 892800 888490 TRUE FALSE FALSE 892997.2048 1165483.57 1334884.808 705524.6835 1095227.914 998414.5594 881544.2362 958605.9836 1071976.771 667005.7944 1.338814763 1.7473365 2.001309162 1.057748957 1.642006597 1.496860399 1.321644045 1.437177895 1.607147614 1 19.34733977 -12.20280652 0.186494312 6.01E-14 1.637101638 0.283953413 0.245136809 83.28579176 1.485279695 33.75348247 0.756001182 6.27E-13 12.20280652 1.637101638 IGLFADIELS(ph)R ddPTM_HeLa_A486_30min_R1 3 IGLFADIELSR 11 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;Q5TBN3;P13796 P13797-3 PLS3;LCP1 Plastin-3;Plastin-2 1 0 IGLFADIELS(1)R;IGLFADIELS(1)R;IGLFADIELS(1)R ;; 63.283 0.015849 504050000 468620 502660 430710 75220 593700 409078 489380 470560 397896 391168 TRUE FALSE FALSE 435772.158 462827.3909 597492.4468 175115.9614 519232.61 358610.1156 366931.9479 363423.7603 432385.9457 293216.9867 1.486176373 1.57844672 2.0377143 0.597223112 1.770813539 1.223019579 1.251400719 1.239436242 1.474627887 1 18.16160916 -1.000000003 0.10690205 0.903373576 3.054761752 0.146763556 0.353071431 223.577097 1.680027948 3.511156277 70.80470519 0.099999999 1.000000003 2.151388176 IGLIHGHQVIPWGDMASLALLQR ddPTM_HeLa_A485_30min_R1 1 IGLIHGHQVIPWGDMASLALLQR 23 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 0 147.9 4.08E-13 9901700 5419 5411 6034.1 5948.2 7446.1 6639.5 9013.6 8568.3 4997.1 9657.2 FALSE FALSE TRUE 6624.437855 6043.769381 8266.36469 6273.135104 6704.740139 6987.133953 7087.770726 6466.91099 5999.972134 7249.837768 0.913736013 0.833642017 1.140213748 0.865279377 0.924812438 0.96376418 0.977645425 0.892007683 0.827600882 1 12.823733 -7.28620339 23.03043456 0.894853173 0.945576591 0.035782002 0.086747686 915.7057154 851592.3203 0.046207294 0.022220005 5.17E-08 7.28620339 0.050723417 IGLIQFCLSAPK ddPTM_HeLa_A485_30min_R1 2 IGLIQFCLSAPK 12 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ; ; 169.93 4.96E-06 74854000 43911 45391 37383 56011 68075 45301 67638 60628 37812 74216 FALSE FALSE TRUE 53678.85046 50699.0826 51212.52734 59070.7391 61297.21397 47672.89031 53186.58875 45758.88794 45400.52157 55715.31704 0.963448712 0.909966689 0.919182194 1.060224409 1.100186039 0.855651423 0.954613409 0.82129817 0.814866072 1 15.76578638 -6.304335323 24.99655979 0.882199905 0.986022198 0.306091795 0.075742475 637.7195055 371613.5175 0.028295008 0.024954014 4.96E-07 6.304335323 0.103822293 IGLIQFCLSAPK ddPTM_HeLa_A486_30min_R1 2 IGLIQFCLSAPK 12 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ; ; 204.5 5.05E-14 88951000 90644 90276 64389 41156 92308 101936 122160 112544 89970 122599 FALSE FALSE TRUE 84290.32369 83122.20098 89322.1452 95813.24791 80729.8699 89360.17273 91594.27592 86920.18802 97768.67204 91899.41241 0.917201987 0.904491104 0.971955564 1.042588254 0.878459043 0.972369359 0.996679669 0.945818757 1.063866128 1 16.48776802 -1 0.206351919 1.011203131 0.518115029 0.255990395 0.0485954 79.29727825 0.975922629 0.085897821 12.76874883 0.1 1 -0.493088102 IGPLGLS(ph)PK ddPTM_HeLa_A485_30min_R1 3 IGPLGLSPK 9 0 P30050 P30050 RPL12 60S ribosomal protein L12 1 0 IGPLGLS(1)PK;IGPLGLS(1)PK;IGPLGLS(1)PK ;; 133.12 0.00021245 1753634000 1364760 1153410 772672 2441760 1857970 1452760 2242840 2159910 1054420 3183150 TRUE FALSE FALSE 1668346.154 1288291.266 1058515.526 2575147.166 1672983.983 1528824.267 1763638.912 1630188.686 1266032.422 2389649.287 0.698155233 0.539113113 0.442958526 1.077625566 0.700096032 0.639769307 0.738032531 0.682187422 0.529798422 1 21.18836747 -11.048763 2.735119523 1.441351332 0.675382087 0.269697342 0.161849752 55807969.34 20247605.59 154169683.9 0.041801135 8.94E-12 11.048763 -0.765969245 IGPLGLS(ph)PK ddPTM_HeLa_A486_30min_R1 5 IGPLGLSPK 9 0 P30050 P30050 RPL12 60S ribosomal protein L12 1 0 IGPLGLS(1)PK;IGPLGLS(1)PK;IGPLGLS(1)PK;IGPLGLS(1)PK;IGPLGLS(1)PK ;;;; 148.19 8.30E-05 4153393000 5474756 5068281 2409866 4003813 4702448 6252810 8625900 7831737 4019651 10180950 TRUE FALSE FALSE 5091003.876 4666651.955 3343030.654 9321079.006 4112623.123 5481401.876 6467608.585 6048621.451 4368077.585 7631573.853 0.667097505 0.611492733 0.438052585 1.221383582 0.538895803 0.718253139 0.847480311 0.792578512 0.572369169 1 22.86354918 -14 0.148564012 1.91279466 0.635326562 0.140585581 0.206391759 284.8381405 2.521801703 78.30826806 1.070884137 1.00E-14 14 -1.277468098 IGQQVDREPGDVAT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 IGQQVDREPGDVATPPR 17 1 H3BT22;Q9Y5N6 H3BT22 ORC6 Origin recognition complex subunit 6 1 0 IGQQVDREPGDVAT(1)PPR;IGQQVDREPGDVAT(1)PPR ; 73.448 0.0012415 2199500000 279438 351380 385410 314960 493500 392820 475130 494160 374650 421240 TRUE FALSE FALSE 341598.0191 392470.8344 527989.1972 332165.4673 444365.4072 413387.4478 373614.594 372966.4852 449838.8185 316232.6203 1.080211202 1.2410827 1.669622813 1.050383312 1.40518523 1.307225824 1.181454948 1.179405479 1.42249341 1 18.27062667 -6.751901703 24.0493276 1.210788918 1.301245808 0.056014031 0.187894875 441.8124044 1114036.173 0.071197949 0.054359757 1.77E-07 6.751901703 0.09045689 IGQQVDREPGDVAT(ph)PPR ddPTM_HeLa_A486_30min_R1 4 IGQQVDREPGDVATPPR 17 1 H3BT22;Q9Y5N6 H3BT22 ORC6 Origin recognition complex subunit 6 1 0 IGQQVDREPGDVAT(1)PPR;IGQQVDREPGDVAT(1)PPR;IGQQVDREPGDVAT(1)PPR;IGQQVDREPGDVAT(1)PPR ;;; 118.05 8.87E-05 3181240000 753412 849980 685685 307320 983510 801870 946050 955630 692517 820720 TRUE FALSE FALSE 700601.7094 782624.4892 951200.5953 715456.4911 860149.0049 702943.4322 709338.2837 738053.9103 752544.9311 615206.37 1.138807632 1.272133267 1.546148807 1.162953646 1.398147105 1.142614034 1.153008679 1.199685091 1.223239823 1 19.23071092 -6.281460479 24.23649434 1.15677102 1.30754484 0.300295438 0.121171333 765.5707488 926756.2749 0.042101409 0.037183576 5.23E-07 6.281460479 0.150773819 IGRPMVAS(ph)PNQR ddPTM_HeLa_A485_30min_R1 4 IGRPMVASPNQR 12 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR ;;; 126.07 1.96E-05 1649810000 383055 545600 472680 358966 600020 492420 604640 719930 437327 533050 TRUE FALSE FALSE 468264.2632 609403.1739 647544.0019 378575.4036 540279.902 518202.3498 475453.7245 543366.0387 525094.5175 400170.4451 1.170162037 1.522859025 1.618170482 0.946035391 1.35012445 1.294954078 1.188128035 1.357836505 1.312177158 1 18.61025509 -13.47218526 0.184136282 1.60E-11 1.372061359 0.210943455 0.176734932 178.7273237 2.065950758 66.63302924 0.541427938 3.37E-14 13.47218526 1.372061359 IGRPMVAS(ph)PNQR ddPTM_HeLa_A486_30min_R1 5 IGRPMVASPNQR 12 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR;IGRPMVAS(1)PNQR ;;;; 153.26 4.30E-08 1320580000 691780 666035 567360 215428 756460 605734 707480 711740 574065 729730 TRUE FALSE FALSE 643289.7944 613255.9609 787056.9864 501527.2711 661577.7331 531004.6977 530461.021 549692.3392 623825.4164 547000.8583 1.176030686 1.121124312 1.438858778 0.91686743 1.209463794 0.970756608 0.969762685 1.004920433 1.14044687 1 19.06118357 -5.278249608 24.99812095 1.032981545 1.232916595 0.437710415 0.111385274 767.833364 1141826.101 0.030680903 0.045633194 5.27E-06 5.278249608 0.199935049 IGSIS(ph)R ddPTM_HeLa_A485_30min_R1 3 IGSISR 6 0 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 IGSIS(1)R;IGSIS(1)R;IGSIS(1)R ;; 97.093 0.013206 1231610000 410950 492040 515150 469040 701380 506170 654590 818280 586250 669030 TRUE FALSE FALSE 502364.4097 549579.7978 705725.4222 494662.4675 631548.1445 532672.2785 514731.499 617595.547 703904.9976 502253.1336 1.000221554 1.094228709 1.405119003 0.984886772 1.257429974 1.060565366 1.024844774 1.229649963 1.401494487 1 18.93805513 -7.470985702 20.0817969 1.239021495 1.126378535 0.061250937 0.151660498 88.69013798 34321.66444 0.080206588 0.038525875 3.38E-08 7.470985702 -0.11264296 IGSIS(ph)R ddPTM_HeLa_A486_30min_R1 4 IGSISR 6 0 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 IGS(0.001)IS(0.999)R;IGS(0.001)IS(0.999)R;IGSIS(1)R;IGSIS(1)R ;;; 90.308 0.013635 963310000 714210 827330 691290 294836 992600 888100 1070410 1192860 787740 917690 TRUE FALSE FALSE 664147.5672 761769.3577 958976.0014 686393.1082 868098.8524 778535.2515 802582.0964 921271.818 856021.9375 687894.4508 0.965478885 1.107392794 1.394074338 0.997817481 1.261965191 1.131765565 1.166722737 1.339263337 1.244408843 1 19.39182769 -4.520499895 24.94534454 1.200235131 1.000957286 0.237574553 0.122801176 98.69374806 1034909.741 0.029666311 0.081576658 3.02E-05 4.520499895 -0.199277846 IGT(ph)PTRPCPLPPGKR ddPTM_HeLa_A485_30min_R1 2 IGTPTRPCPLPPGKR 15 2 B1AUU8;P42566;P42566-2 B1AUU8 EPS15 Epidermal growth factor receptor substrate 15 1 0 IGT(0.973)PT(0.027)RPCPLPPGKR;IGT(0.988)PT(0.012)RPCPLPPGKR ; 111.77 0.00020586 899320000 645100 536010 317530 1283420 723760 608440 996750 839770 440120 1503950 TRUE FALSE FALSE 788600.2694 598691.7068 434997.5605 1353529.985 651699.9131 640296.9776 783786.2198 633815.0908 528448.047 1129042.943 0.698467914 0.530264779 0.385279907 1.198829498 0.57721446 0.567114813 0.694204082 0.561373768 0.468049555 1 20.10666893 -10.59938814 2.77424726 1.028256229 0.63401993 0.217575763 0.209749625 64905169.42 63046763.65 13385329.11 0.052459204 2.52E-11 10.59938814 -0.394236299 IGT(ph)PTRPCPLPPGKR ddPTM_HeLa_A486_30min_R1 1 IGTPTRPCPLPPGKR 15 2 B1AUU8;P42566;P42566-2 B1AUU8 EPS15 Epidermal growth factor receptor substrate 15 1 0 IGT(0.945)PT(0.055)RPCPLPPGKR 63.46 0.020304 419290000 329970 320170 151960 1187900 283130 456940 543600 519530 221930 1162500 TRUE FALSE FALSE 306840.807 294798.5632 210802.9816 2765491.233 247617.1953 400567.3886 407585.5304 401244.3603 241167.0711 871402.4334 0.352122963 0.33830358 0.241912317 3.173609721 0.284159403 0.459681283 0.46773513 0.460458159 0.276757399 1 19.73297962 IGTLHTS(ph)PDLK ddPTM_HeLa_A485_30min_R1 5 IGTLHTSPDLK 11 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 IGTLHT(0.034)S(0.966)PDLK;IGTLHT(0.026)S(0.974)PDLK;IGTLHT(0.109)S(0.891)PDLK;IGTLHT(0.188)S(0.812)PDLK;IGTLHT(0.038)S(0.962)PDLK ;;;; 180.84 1.44E-10 1783500000 2566410 2414340 1859360 3736540 3295380 2912480 4252480 4530530 2436060 5227710 TRUE FALSE FALSE 3137299.05 2696676.061 2547214.638 3940657.719 2967280.396 3064972.949 3343902.908 3419410.414 2924954.897 3924538.106 0.799405934 0.687132087 0.649048262 1.004107391 0.756083981 0.780976733 0.852050055 0.8712899 0.745299146 1 21.90409144 -14 0.103490511 1.623925417 0.669001825 0.312535082 0.093859401 224.7076719 1.567200273 30.37550677 1.450385279 1.00E-14 14 -0.954923592 IGTLHTS(ph)PDLK ddPTM_HeLa_A486_30min_R1 3 IGTLHTSPDLK 11 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 IGTLHT(0.026)S(0.974)PDLK;IGTLHT(0.196)S(0.804)PDLK;IGTLHT(0.115)S(0.885)PDLK ;; 159.08 9.38E-08 1051000000 2140410 2032350 1056110 942710 2047250 2378270 2983160 2766030 1673340 3172360 TRUE FALSE FALSE 1990378.312 1871299.184 1465064.076 2194676.522 1790464.815 2084863.228 2236741.815 2136265.351 1818386.459 2377980.407 0.837003663 0.786927924 0.616095941 0.92291615 0.752935058 0.876736924 0.940605654 0.898352797 0.764676804 1 21.1813054 -6.078691392 1.305531474 0.894738522 0.767740941 0.263350362 0.091463478 0.62447598 2.191023919 0.040463306 0.042722819 8.34E-07 6.078691392 -0.126997581 IGTLQDRPPS(ph)PFREPPGSER ddPTM_HeLa_A485_30min_R1 4 IGTLQDRPPSPFREPPGSER 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 IGTLQDRPPS(1)PFREPPGSER;IGTLQDRPPS(1)PFREPPGSER;IGTLQDRPPS(0.955)PFREPPGS(0.044)ER;IGTLQDRPPS(1)PFREPPGSER ;;; 165.39 9.95E-14 1881290000 624382 761125 674509 695841 925960 784412 1039398 1184177 657425 949845 TRUE FALSE FALSE 763273.6218 850131.9478 924037.9478 733853.0319 833768.1712 825482.5994 817322.1262 893755.734 789364.1672 713066.1221 1.070410721 1.192220359 1.295865726 1.029151448 1.169271888 1.157652248 1.146208046 1.253398116 1.106999958 1 19.44367634 -8.010938005 24.03026949 0.999999991 1.165415739 0.321410037 0.073153655 355.8222455 781726.171 0.069095068 0.01784027 9.75E-09 8.010938005 0.165415748 IGTLQDRPPS(ph)PFREPPGSER ddPTM_HeLa_A486_30min_R1 5 IGTLQDRPPSPFREPPGSER 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 IGTLQDRPPS(1)PFREPPGSER;IGTLQDRPPS(1)PFREPPGSER;IGTLQDRPPS(1)PFREPPGSER;IGTLQDRPPS(0.971)PFREPPGS(0.029)ER;IGTLQDRPPS(1)PFREPPGSER ;;;; 242.56 1.32E-46 4485030000 920932 1043134 855625 450266 1351158 880054 1181888 1111334 772940 1028146 TRUE FALSE FALSE 856379.4225 960472.2628 1186945.914 1048242.003 1181683.165 771481.8852 886167.1217 858307.5085 839939.0615 770691.5495 1.111183097 1.2462473 1.540105007 1.360131695 1.5332764 1.001025489 1.149833707 1.113684857 1.089851137 1 19.55579405 -6.272968657 24.93552365 1.082919002 1.362184142 0.567864212 0.125071901 593.4777367 1283569.904 0.045953283 0.040873491 5.33E-07 6.272968657 0.27926514 IGVFSYGSGLAATLYSLK ddPTM_HeLa_A485_30min_R1 2 IGVFSYGSGLAATLYSLK 18 0 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 0 0 ; ; 297.24 3.86E-71 6090500 6764.1 5467.62 7452.2 8140.3 9757.1 9288.2 11208.8 11829.7 4040.13 11426.4 FALSE FALSE TRUE 8268.750709 6107.010597 10209.07889 8584.983977 8785.648865 9774.51579 8813.948313 8928.447527 4850.947033 8578.008767 0.96394757 0.711938022 1.190145542 1.00081315 1.024206095 1.139485404 1.027505165 1.040853159 0.565509685 1 13.06642708 -7.720975794 24.99995428 0.782753373 1.013025985 0.263237667 0.153647386 170.1272573 105111.2767 0.101336415 0.038300558 1.90E-08 7.720975794 0.230272612 IGVFSYGSGLAATLYSLK ddPTM_HeLa_A486_30min_R1 1 IGVFSYGSGLAATLYSLK 18 0 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 0 0 83.617 0.0070804 3190500 1251.8 1345.4 2189.9 896.64 2065.7 2847.1 3533 3029.4 2056.1 2478.3 FALSE FALSE TRUE 1164.055284 1238.785604 3037.887928 2087.423234 1806.600644 2495.853749 2649.006032 2339.671751 2234.324403 1857.717549 0.626605097 0.666832051 1.635279771 1.123649413 0.972484028 1.343505503 1.425946605 1.25943352 1.202725573 1 10.85931545 -4.69299758 10.60405924 1.250334111 0.643414182 0.623147234 0.186201224 0.28656997 42.53748265 0.047396946 0.125518635 2.03E-05 4.69299758 -0.606919929 IGVHAFQQR ddPTM_HeLa_A485_30min_R1 2 IGVHAFQQR 9 0 A0A096LNZ9;A0A096LPJ4;P05161 A0A096LNZ9 ISG15 Ubiquitin-like protein ISG15 0 0 ; ; 83.265 0.018083 54530000 34251 41807 39376 33862 50771 45513 55545 64720 38848 49968 FALSE FALSE TRUE 41870.01679 46695.96498 53942.82097 35711.79532 45716.06097 47895.9903 43677.35699 48847.31852 46644.43727 37511.89719 1.116179663 1.2448308 1.438019002 0.952012508 1.218708314 1.276821326 1.164360117 1.302182032 1.243457163 1 15.19506061 -10.06263958 4.583981501 0.99998925 1.219607261 0.227409173 0.120149095 1.34E-05 2.74E-06 0.114387835 0.027741725 8.66E-11 10.06263958 0.219618011 IGVHAFQQR ddPTM_HeLa_A486_30min_R1 1 IGVHAFQQR 9 0 A0A096LNZ9;A0A096LPJ4;P05161 A0A096LNZ9 ISG15 Ubiquitin-like protein ISG15 0 0 73.26 0.030674 20241000 8960.2 11055 6878.1 3327.2 12757 11359 11424 11866 8505.4 13221 FALSE FALSE TRUE 8332.136251 10178.96154 9541.484522 7745.889747 11156.89811 9957.64207 8565.594369 9164.370833 9242.65492 9910.375546 0.84074879 1.027101495 0.962777291 0.781593968 1.125779548 1.004769398 0.86430573 0.92472488 0.932624084 1 13.27472401 -4.232030232 22.50735058 0.954218117 0.84074811 0.134901743 0.088707089 6017.532706 4605037.09 0.022255556 1.887831163 5.86E-05 4.232030232 -0.113470008 IGYHLLYYLR ddPTM_HeLa_A485_30min_R1 1 IGYHLLYYLR 10 0 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 0 0 109.71 0.0023939 13283000 14033 19056 20070 13242 23475 12536 19002 18697 11566 18586 FALSE FALSE TRUE 17154.59244 21284.43343 27494.72818 13965.37693 21137.74657 13192.36558 14942.06747 14111.53143 13887.19011 13952.85225 1.229468508 1.52545394 1.970545354 1.000897643 1.514940902 0.94549597 1.070896989 1.011372527 0.995293999 1 13.76827245 -5.982620687 1.260798888 1.00108977 1.525389632 0.443855512 0.239488739 0.406672038 1.349315277 0.103320509 0.119505698 1.04E-06 5.982620687 0.524299862 IGYHLLYYLR ddPTM_HeLa_A486_30min_R1 1 IGYHLLYYLR 10 0 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 0 0 107.47 0.0026401 12641000 11807 14101 13537 5322.3 16955 13029 16628 15479 11291 14237 FALSE FALSE TRUE 10979.39027 12983.58541 18778.88893 12390.58337 14828.3458 11421.61445 12467.49853 11954.7696 12269.71297 10671.96253 1.028807048 1.216607102 1.759647195 1.161040749 1.389467566 1.070244991 1.168247966 1.120203483 1.149714772 1 13.38153789 -6.265467747 24.7662524 1.113355312 1.32244467 0.242603303 0.183903246 481.7401553 2961710.302 0.064892253 0.059349415 5.43E-07 6.265467747 0.209089357 IHACLYFIAPTGHSLK ddPTM_HeLa_A485_30min_R1 2 IHACLYFIAPTGHSLK 16 0 D6RDU5;D6RGI3;D6RER5;Q9NVA2;Q9NVA2-2 D6RDU5 11-Sep Septin-11 0 0 ; ; 148.7 1.02E-08 79386000 65002 74896 61508 70492 92319 86277 111203 139805 45267 100586 FALSE FALSE TRUE 79461.47065 83654.43569 84262.36876 74342.79946 83127.39621 90794.33031 87443.57061 105517.6045 54351.67169 75511.76135 1.052305882 1.107833193 1.115884033 0.984519473 1.100853625 1.202386604 1.158012594 1.397366485 0.719777565 1 16.20441375 -4.25784527 19.35114304 1.103716368 1.052305431 0 0.16476088 125.8867194 676901.336 0.038948393 0.262299252 5.52E-05 4.25784527 -0.051410937 IHACLYFIAPTGHSLK ddPTM_HeLa_A486_30min_R1 2 IHACLYFIAPTGHSLK 16 0 D6RDU5;D6RGI3;D6RER5;Q9NVA2;Q9NVA2-2 D6RDU5 11-Sep Septin-11 0 0 ; ; 189.1 5.26E-14 80086000 142222 128261 114275 71299 181439 144666 219576 186792 124548 189713 FALSE FALSE TRUE 132252.9722 118097.1312 158525.3404 165987.6753 158681.2288 126818.5798 164635.7624 144263.5392 135343.9209 142207.63 0.929999131 0.83045566 1.114745674 1.1672206 1.115841877 0.891784638 1.157713988 1.014457095 0.951734594 1 17.11763935 -4.759808558 24.99962119 1.056696919 0.880227366 0.376832045 0.088008012 42.08214545 645041.8979 0.023220366 0.055184613 1.74E-05 4.759808558 -0.176469553 IHAESLLLDS(ph)PAVAK ddPTM_HeLa_A485_30min_R1 4 IHAESLLLDSPAVAK 15 0 Q9H4L5-5;Q9H4L5;Q9H4L5-6;Q9H4L5-2 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 IHAESLLLDS(1)PAVAK;IHAESLLLDS(1)PAVAK;IHAESLLLDS(1)PAVAK;IHAESLLLDS(1)PAVAK ;;; 195.92 4.51E-19 861148000 791728 802242 661695 908740 1100640 882275 1184050 1264170 804098 1396310 TRUE FALSE FALSE 967845.1622 896057.2233 906483.5159 958382.1651 991056.417 928469.5547 931068.0447 954130.3254 965473.093 1048235.614 0.923308795 0.854824251 0.864770767 0.914281248 0.945451961 0.885745096 0.888224014 0.910225061 0.921045879 1 19.9995316 -14 0.201812888 1.466900062 0.883583354 0.592747794 0.025383089 104.2841011 1.033450849 19.58315607 0.063800008 1.00E-14 14 -0.583316708 IHAESLLLDS(ph)PAVAK ddPTM_HeLa_A486_30min_R1 3 IHAESLLLDSPAVAK 15 0 Q9H4L5-5;Q9H4L5;Q9H4L5-6;Q9H4L5-2 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 IHAESLLLDS(1)PAVAK;IHAESLLLDS(1)PAVAK;IHAESLLLDS(1)PAVAK ;; 188.04 3.95E-18 716248000 673147 694329 441454 159753 742519 725433 861150 814150 636470 732143 TRUE FALSE FALSE 625962.8714 639307.8413 612396.8113 371913.0575 649385.3433 635936.4521 645681.1617 628785.8178 691639.7321 548809.6273 1.140582891 1.164899101 1.115863828 0.677672255 1.183261574 1.158756007 1.17651209 1.145726654 1.260254372 1 19.06594626 IHALTITWALPPQQQHYR ddPTM_HeLa_A485_30min_R1 1 IHALTITWALPPQQQHYR 18 0 O43847;O43847-2;F5H7V1;G3V1R5 O43847 NRD1 Nardilysin 0 0 107.82 6.25E-05 10421000 6355.3 6269.6 7617.9 7364.1 9092.9 6385.5 9105.8 9308.6 5985.1 10300 FALSE FALSE TRUE 7769.014559 7002.775182 10436.07822 7766.382136 8187.578949 6719.834906 7160.271442 7025.651255 7186.254671 7732.399557 1.00473527 0.905640627 1.34965584 1.00439483 1.058866512 0.869049104 0.926008982 0.908599097 0.929369288 1 12.91670047 -6.216608997 8.903815898 0.920906485 1.068532095 0.278160326 0.110920589 0.561309434 107.0938148 0.037097519 0.036986681 6.07E-07 6.216608997 0.147625611 IHAYVDYPIYDVLQMVGHANRPLQDDEGR ddPTM_HeLa_A486_30min_R1 1 IHAYVDYPIYDVLQMVGHANRPLQDDEGR 29 1 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 84.365 6.60E-05 3092000 2113.9 2838.2 1954.8 876.97 2460.5 2260.4 2345.7 2377.5 2454.5 2447 FALSE FALSE TRUE 1965.726526 2613.290695 2711.750911 2041.63048 2151.881147 1981.53483 1758.78105 1836.19515 2667.258036 1834.255273 1.071675549 1.424714834 1.478393412 1.113056896 1.173163397 1.080293926 0.958852934 1.001057583 1.454136769 1 10.84097872 -5.317122883 12.35358301 1.106402386 1.334870398 0.261887854 0.163778527 1.843444498 407.5772722 0.046250748 0.068624749 4.82E-06 5.317122883 0.228468013 IHEDIFDIIDR ddPTM_HeLa_A485_30min_R1 2 IHEDIFDIIDR 11 0 K7EKE5;K7EIS0;Q9NRH3;P23258 K7EKE5 TUBG1;TUBG2 Tubulin gamma chain;Tubulin gamma-2 chain;Tubulin gamma-1 chain 0 0 ; ; 108.56 0.0021478 41774000 50275 67584 61252 57005 64173 70387 77238 79926 54920 74990 FALSE FALSE TRUE 61458.5003 75487.3609 83911.66371 60119.03881 57783.71079 74072.35448 60735.47032 60324.02318 65941.94024 56296.37309 1.091695556 1.340892082 1.490534098 1.067902522 1.026419778 1.315757133 1.078852278 1.071543687 1.171335499 1 15.78075436 -6.385913969 0.359176075 1.025162175 1.309770611 0.206508783 0.137152065 2.717758595 0.759564255 0.168582671 0.287845147 4.11E-07 6.385913969 0.284608436 IHFFLSK ddPTM_HeLa_A485_30min_R1 2 IHFFLSK 7 0 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5;P35659-2;D6RDA2 B4DFG0 DEK Protein DEK 0 0 ; ; 143 0.00083118 198799000 734960 904590 800050 723710 1123660 907090 1161580 1221290 787010 1040770 FALSE FALSE TRUE 898449.3164 1010373.932 1096021.788 763244.4448 1011784.465 954583.8298 913398.9438 921766.7126 944955.6881 781325.193 1.14990445 1.29315417 1.402772876 0.97685887 1.294959479 1.221749712 1.169038132 1.179747845 1.209426877 1 19.57556361 -14 0.191036334 0.073415118 1.251207814 0.271720207 0.105211898 183.33189 1.795316097 64.52003083 0.280091068 1.00E-14 14 1.177792695 IHFFLSK ddPTM_HeLa_A486_30min_R1 2 IHFFLSK 7 0 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5;P35659-2;D6RDA2 B4DFG0 DEK Protein DEK 0 0 ; ; 135.87 0.0010849 199531000 963470 943550 701730 272450 992310 933760 1080560 1030090 853960 999020 FALSE FALSE TRUE 895935.7284 868779.6616 973458.649 634277.3689 867845.2269 818562.185 810192.459 795560.9937 927981.9404 748858.8895 1.196401273 1.16013801 1.299922673 0.84699184 1.158890198 1.093079346 1.081902706 1.062364358 1.239194665 1 19.51433437 IHFPLATYAPVISAEK ddPTM_HeLa_A485_30min_R1 4 IHFPLATYAPVISAEK 16 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;Q6PEY2;C9JDS9;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 256.77 8.07E-43 950510000 932700 1048640 865680 1039410 1279790 1108140 1516920 1572550 975860 1406850 FALSE FALSE TRUE 1140175.897 1171269.326 1185931.056 1096190.336 1152369.614 1166160.497 1192817.65 1186879.647 1171706.151 1056148.186 1.079560532 1.109000935 1.122883201 1.037913383 1.091105992 1.104163707 1.129403682 1.123781362 1.109414537 1 20.01038084 -6.222566216 6.385299741 1.103346688 1.088320894 0 0.040074719 0.960623558 115.2955332 0.013016835 0.012846857 5.99E-07 6.222566216 -0.015025794 IHFPLATYAPVISAEK ddPTM_HeLa_A486_30min_R1 4 IHFPLATYAPVISAEK 16 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;Q6PEY2;C9JDS9;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 282.24 5.83E-55 840310000 1536460 1629280 1068710 666986 2072890 1632350 1970420 1906150 1376910 1853940 FALSE FALSE TRUE 1428762.088 1500169.919 1482543.133 1552777.116 1812888.807 1430967.254 1477400.075 1472161.256 1496261.667 1389701.357 1.028107285 1.079490864 1.066806998 1.117345902 1.304516829 1.029694075 1.063106161 1.059336417 1.076678568 1 20.40634345 -10.2801151 7.00063946 0.999999143 1.093986663 0.116960227 0.075329218 1.06E-06 1.09E-07 0.076454793 0.018542842 5.25E-11 10.2801151 0.09398752 IHFS(ph)PSEPK ddPTM_HeLa_A485_30min_R1 2 IHFSPSEPK 9 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 IHFS(0.999)PS(0.001)EPK;IHFS(0.999)PS(0.001)EPK ; 141.08 9.24E-05 285530000 772300 778290 591530 1082570 1014350 817960 1117090 1253750 744570 1458250 TRUE FALSE FALSE 944095.4706 869304.2453 810361.5626 1141708.058 913357.7524 860787.1208 878414.5957 946265.8467 893998.3694 1094735.112 0.862396264 0.794077248 0.740235289 1.042908047 0.834318496 0.78629717 0.802399216 0.864378822 0.816634416 1 20.0621504 -10.66080544 2.649826329 1.020431673 0.838104387 0.284815876 0.076925854 33064370.2 28460679.34 4577086.975 0.021165343 2.18E-11 10.66080544 -0.182327286 IHGALLILNELVR ddPTM_HeLa_A485_30min_R1 2 IHGALLILNELVR 13 0 P42345 P42345 MTOR Serine/threonine-protein kinase mTOR 0 0 ; ; 121.28 0.00019031 15438800 11190.7 12735.8 11604.1 11602.6 12025 14136.4 14443.1 19743.8 13035.6 19823.9 FALSE FALSE TRUE 13680.03261 14225.14102 15896.93948 12236.42066 10827.74878 14876.56004 11357.2137 14901.60209 15651.72535 14882.16656 0.919223189 0.955851486 1.068187176 0.822220381 0.727565354 0.999623273 0.763142493 1.001305961 1.051710131 1 13.86129695 -7.497097366 24.28072167 1.026072784 0.896619137 0.251032494 0.09865713 711.4584958 670050.7196 0.056183236 0.026809388 3.18E-08 7.497097366 -0.129453648 IHGVNSGSSEGAQPNTENGVPEITDAATDQGPAES(ph)PPT(ph)SPSSASR ddPTM_HeLa_A485_30min_R1 1 IHGVNSGSSEGAQPNTENGVPEITDAATDQGPAESPPTSPSSASR 45 0 Q8IWE2 Q8IWE2 FAM114A1 Protein NOXP20 2 0 IHGVNSGSSEGAQPNTENGVPEITDAATDQGPAES(0.928)PPT(0.423)S(0.347)PS(0.101)S(0.101)AS(0.101)R 103.35 1.50E-06 88544000 23874 22237 21133 15283 25248 15968 25137 24984 18168 24720 TRUE FALSE FALSE 29184.68894 24837.42371 28950.97612 16117.87159 22734.22047 16804.05979 19766.2746 18856.63483 21814.15095 18557.75894 1.572640804 1.338384866 1.560046998 0.868524677 1.225052041 0.905500489 1.065121854 1.016105171 1.175473344 1 14.17973488 -5.254353039 24.99999878 1.040796343 1.47516031 0.757289328 0.117623152 255.6250354 901820.8745 0.029737687 0.050147852 5.57E-06 5.254353039 0.434363966 IHLAQSLHK ddPTM_HeLa_A485_30min_R1 2 IHLAQSLHK 9 0 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 ; ; 128.86 0.00050697 31243000 30255 52254 43599 17269.9 61543 37411 54408 65786 41661 42492 FALSE FALSE TRUE 36985.12037 58364.65075 59728.08441 18213.31091 55415.56283 39369.78211 42783.28633 49651.88035 50021.98056 31899.52641 1.159425375 1.829640039 1.872381541 0.570958662 1.73719077 1.234180771 1.341188762 1.556508386 1.568110445 1 14.96124738 IHLAQSLHK ddPTM_HeLa_A486_30min_R1 2 IHLAQSLHK 9 0 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 ; ; 122.28 0.00076573 29943000 28286 27410 20294 1096.9 33932 22334 24473 26578 26345 14104.1 FALSE FALSE TRUE 26303.29747 25237.93177 28152.38029 2553.638634 29675.93216 19578.65816 18349.59655 20526.76959 28628.60581 10572.34156 2.487934894 2.38716576 2.662833029 0.241539551 2.806940354 1.851875296 1.735622752 1.941553769 2.707877499 1 13.36800732 IHLGSS(ph)PK ddPTM_HeLa_A485_30min_R1 6 IHLGSSPK 8 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 IHLGS(0.002)S(0.998)PK;IHLGS(0.002)S(0.998)PK;IHLGS(0.001)S(0.999)PK;IHLGSS(1)PK;IHLGS(0.011)S(0.989)PK;IHLGS(0.001)S(0.999)PK ;;;;; 144.47 4.86E-05 7173930000 6536460 6691210 4897070 9349200 8719100 7210930 11505700 11064400 5620440 12744500 TRUE FALSE FALSE 7990472.976 7473688.804 6708699.977 9859923.123 7850995.789 7588483.145 9047413.202 8350838.552 6748410.754 9567530.695 0.835165648 0.781151275 0.701194508 1.030560908 0.820587468 0.7931496 0.945637228 0.872831122 0.705345085 1 23.18971519 -11.22388583 2.429126353 1.576155963 0.835352374 0.217017191 0.095661319 7606570.392 1952022.321 24067710.11 0.024523899 5.97E-12 11.22388583 -0.740803589 IHLGSS(ph)PK ddPTM_HeLa_A486_30min_R1 7 IHLGSSPK 8 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 IHLGS(0.065)S(0.935)PK;IHLGS(0.004)S(0.996)PK;IHLGS(0.007)S(0.993)PK;IHLGS(0.001)S(0.999)PK;IHLGSS(1)PK;IHLGSS(1)PK;IHLGS(0.001)S(0.999)PK ;;;;;; 142 0.00032757 9690050000 8916520 8218580 4072930 2752335 7482280 8881890 11846350 11044850 5844500 13390670 TRUE FALSE FALSE 8291517.993 7567309.789 5650077.573 6407574.975 6543782.673 7786132.716 8882267.932 8530178.762 6351105.966 10037559.07 0.826049235 0.753899403 0.562893581 0.638359877 0.65192968 0.775699815 0.884903179 0.849826008 0.632734106 1 23.25890514 -6.447215121 4.381082087 0.829854502 0.681656484 0.316671286 0.106947337 0.299277885 10.71431311 0.040185402 0.034416288 3.57E-07 6.447215121 -0.148198017 IHMKS(ph)CFLEDATIGNSNK ddPTM_HeLa_A485_30min_R1 1 IHMKSCFLEDATIGNSNK 18 1 Q9H171-7;Q9H171-3;Q9H171-4;Q9H171;Q9H171-2 Q9H171-7 ZBP1 Z-DNA-binding protein 1 1 0 IHMKS(0.957)CFLEDAT(0.042)IGNS(0.001)NK 64.203 0.032973 151710000 251640 106100 46173 526380 202980 167450 354220 279180 134260 680960 TRUE FALSE FALSE 307616.4499 118507.4721 63254.31412 555134.8065 182770.5985 176217.4231 278538.0033 210710.6673 161204.7505 511209.2041 0.601742784 0.231817955 0.123734693 1.085924905 0.357526032 0.344707062 0.544861088 0.412180895 0.315340078 1 18.96355429 -10.03837242 4.445135106 1.000026835 0.445713504 0.304623458 0.250912071 673715609.2 1290374708 287100.5113 0.062504695 9.15E-11 10.03837242 -0.554313331 IHMS(ph)GPK ddPTM_HeLa_A485_30min_R1 7 IHMSGPK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK ;;;;;; 111.61 0.0020957 2646830000 3864160 3152590 2093586 4348660 3889590 3476690 5502610 5653200 3393500 6803550 TRUE FALSE FALSE 4723729.061 3521257.977 2868090.583 4586216.284 3502328.762 3658724.112 4326932.421 4266743.836 4074544.323 5107550.195 0.924852205 0.689422099 0.561539383 0.897928774 0.685715975 0.716336399 0.847163955 0.835379717 0.797749247 1 22.28420005 -8.409696308 0.496893511 1.010373458 0.737451957 0.323911374 0.103229678 1.996314822 0.970968271 0.158414825 0.056139064 3.89E-09 8.409696308 -0.272921501 IHMS(ph)GPK ddPTM_HeLa_A486_30min_R1 6 IHMSGPK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK;IHMS(1)GPK ;;;;; 105.52 0.0025177 2913031000 4628630 4188530 1865092 2303980 3269900 4784210 6400440 6974160 2953890 6393060 TRUE FALSE FALSE 4304186.939 3856615.628 2587305.571 5363781.877 2859758.651 4193982.812 4798982.215 5386296.013 3209935.564 4792196.164 0.89816585 0.804769984 0.539899763 1.119274273 0.596753253 0.875169269 1.001416063 1.123972356 0.669825578 1 22.19225553 -6.522057416 22.69237817 0.956157256 0.790622823 0.140691416 0.182850531 17.86435802 493684.37 0.066349178 0.052188265 3.01E-07 6.522057416 -0.165534434 IHNVGS(ph)PLK ddPTM_HeLa_A485_30min_R1 2 IHNVGSPLK 9 0 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1;P52701-4 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 IHNVGS(1)PLK;IHNVGS(1)PLK ; 111.79 0.00062508 399390000 624100 486230 446900 975290 736560 607540 840520 709160 554520 1231920 TRUE FALSE FALSE 762928.8919 543090.3689 612226.9071 1028567.623 663225.5002 639349.855 660936.0356 535237.3981 665807.0776 924825.0158 0.824944048 0.587235812 0.661992157 1.112175391 0.717136203 0.691319811 0.714660638 0.578744507 0.719927626 1 19.8188209 -5.954115758 24.99999763 0.711986972 0.789848517 0.017264203 0.162397001 463.0076613 252267.3 0.051285549 0.058152324 1.11E-06 5.954115758 0.077861545 IHNVGS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 IHNVGSPLK 9 0 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1;P52701-4 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 IHNVGS(1)PLK;IHNVGS(1)PLK ; 116.51 0.00045998 536440000 910330 959760 509340 404650 876750 1099880 1228210 1188370 827880 1435090 TRUE FALSE FALSE 846520.5679 883705.1222 706570.0886 942045.6499 766779.8396 964187.9884 920898.8673 917804.0929 899641.305 1075734.123 0.786923599 0.821490276 0.656825951 0.875723499 0.712796799 0.896306966 0.856065498 0.853188602 0.836304516 1 20.03689012 -9.417777367 0.183973869 1.13474946 0.727978573 0.497653527 0.064297065 12.01450034 0.638241596 1.160225632 0.260869039 3.82E-10 9.417777367 -0.406770887 IHPMAYQLQLQAASNFKS(ph)PVK ddPTM_HeLa_A485_30min_R1 5 IHPMAYQLQLQAASNFKSPVK 21 1 Q5SRQ6;P67870 Q5SRQ6 CSNK2B Casein kinase II subunit beta 1 0 IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK ;;;; 340.62 1.80E-114 30395640000 10488465 5870801 4297387 15365980 10449639 13967280 21743230 24850130 5634504 20236440 TRUE FALSE FALSE 12821587.85 6557340.108 5887169.28 16205384.58 9409236.25 14698585.18 17097611.28 18755596.65 6765297.27 15191867.93 0.843977048 0.431634881 0.387521094 1.066714419 0.619360061 0.967529816 1.125444966 1.234581339 0.445323597 1 23.85679593 -5.263054493 24.9983446 0.930157452 0.542103391 0.316086279 0.247915153 165.2552825 2557797.519 0.06875945 0.108404253 5.46E-06 5.263054493 -0.388054061 IHPMAYQLQLQAASNFKS(ph)PVK ddPTM_HeLa_A486_30min_R1 7 IHPMAYQLQLQAASNFKSPVK 21 1 Q5SRQ6;P67870 Q5SRQ6 CSNK2B Casein kinase II subunit beta 1 0 IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAAS(0.015)NFKS(0.985)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK;IHPMAYQLQLQAASNFKS(1)PVK ;;;;;; 401.78 2.46E-175 24156130000 5361787 6781157.2 3554883 4785034 7781265 10634215 13874202 11805509 8416125 15082073 TRUE FALSE FALSE 4985953.42 6243793.607 4931428.901 11139800.97 6805266.186 9322273.674 10402729.91 9117652.313 9145641.491 11305423.75 0.441023134 0.552283023 0.436200271 0.985350149 0.601947024 0.824584189 0.920153914 0.806484791 0.808960521 1 23.43051173 -4.153555882 0.371224279 0.915473426 7.54E-15 0.604725939 0.127692357 4.632378013 0.478148292 0.111939864 1.940533217 7.02E-05 4.153555882 -0.915473426 IHPVSTMVK ddPTM_HeLa_A485_30min_R1 3 IHPVSTMVK 9 0 A0A5F9ZHM4;P07195;A0A3B3IS95 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 ;; ;; 104.2 0.0043252 310530000 357133 419156 393626 436091 536577 398893 525316 573241 418748 617411 FALSE FALSE TRUE 436576.0038 468172.648 539244.6375 459913.5471 483153.5098 419778.4207 413077.9452 432652.7459 502786.8826 463501.8003 0.941907892 1.010077302 1.163414332 0.992258383 1.042398346 0.905667293 0.891211091 0.933443507 1.08475713 1 18.82221542 -6.241171351 23.96873133 0.954368227 1.034217722 0.167413245 0.07314719 791.574678 936106.5037 0.024971501 0.024937448 5.74E-07 6.241171351 0.079849494 IHPVSTMVK ddPTM_HeLa_A486_30min_R1 3 IHPVSTMVK 9 0 A0A5F9ZHM4;P07195;A0A3B3IS95 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 ;; ;; 97.431 0.0062076 566408000 450102 479563 352106 150625.9 927101 471368 529094 549342 446323 476130 FALSE FALSE TRUE 418552.1741 441560.6813 488450.8729 350664.7074 810815.3477 413215.4087 396709.085 424268.8187 485010.637 356903.9489 1.172730578 1.237197522 1.368577945 0.98251843 2.27180268 1.157777632 1.111528988 1.188747897 1.358938836 1 18.44517634 -8.319006202 0.650396371 1.005783458 1.349280169 0.073951073 0.337412109 3.605443392 3.048619532 0.376420994 0.139469589 4.80E-09 8.319006202 0.343496711 IHRAS(ph)DPGLPAEEPK ddPTM_HeLa_A485_30min_R1 6 IHRASDPGLPAEEPK 15 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK ;;;;; 128.14 1.32E-05 17373390000 9297380 8857230 5933630 11745400 9041140 8905560 12886100 12038070 6918750 14034090 TRUE FALSE FALSE 11365550.11 9893006.001 8128726.656 12387021.46 8140972.356 9371841.351 10132879.47 9085714.458 8307279.662 10535649.64 1.078770697 0.939002941 0.771544891 1.175724505 0.772707202 0.889536162 0.961770732 0.862378189 0.788492399 1 23.32877594 -4.303248446 4.159502384 0.902084516 1.087019156 0.167067063 0.116957039 0.339647699 11.90433291 0.028177248 0.16843999 4.97E-05 4.303248446 0.18493464 IHRAS(ph)DPGLPAEEPK ddPTM_HeLa_A486_30min_R1 5 IHRASDPGLPAEEPK 15 1 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK ;;;; 139.17 2.31E-06 15898750000 11673880 10990860 5685250 5504790 9305340 11729360 14551120 13254960 8131410 17740450 TRUE FALSE FALSE 10855601.3 10119904.23 7886731.056 12815429.32 8138177.488 10282310.82 10910275.87 10237094.96 8836247.166 13298125.85 0.816325655 0.76100229 0.593070869 0.963701913 0.61197928 0.773215033 0.820437105 0.769814865 0.664473119 1 23.6647196 -10.17065399 4.69009574 1.00003179 0.75339064 0.339684581 0.103447331 3.24E-05 5.73E-06 0.09432825 0.022875015 6.75E-11 10.17065399 -0.246641151 IHRAS(ph)DPGLPAEEPKEK ddPTM_HeLa_A485_30min_R1 3 IHRASDPGLPAEEPKEK 17 2 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK ;; 242.71 8.50E-43 6654300000 3079850 2784320 2309510 5418400 8546300 6287600 13208100 17577800 4080300 9440000 TRUE FALSE FALSE 3764952.007 3109922.004 3163893.856 5714393.472 7695400.364 6616809.014 10386081.53 13266816.99 4899178.783 7086781.73 0.531264 0.438834174 0.446450021 0.806345347 1.085880821 0.933683196 1.465556854 1.872051023 0.691312216 1 22.75669918 -5.722423051 1.212228791 1.285222772 0.441400754 0.517209265 0.303644436 0.348452614 1.077277043 0.123254263 0.186946159 1.89E-06 5.722423051 -0.843822017 IHRAS(ph)DPGLPAEEPKEK ddPTM_HeLa_A486_30min_R1 3 IHRASDPGLPAEEPKEK 17 2 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK ;; 184.2 5.19E-18 5855200000 2749290 2094150 1488920 3024960 4660430 3437980 6468100 6761600 1523940 4421210 TRUE FALSE FALSE 2556578.968 1928201.927 2065469.699 7042259.753 4075875.413 3013836.982 4849712.967 5222131.285 1656036.346 3314110.239 0.771422428 0.581815869 0.623235062 2.124932258 1.22985511 0.909395514 1.463352942 1.575726487 0.499692595 1 21.66019016 IHRFVEK ddPTM_HeLa_A485_30min_R1 2 IHRFVEK 7 1 Q9Y5P6;Q9Y5P6-2 Q9Y5P6 GMPPB Mannose-1-phosphate guanyltransferase beta 0 0 ; ; 81.635 0.027544 115912000 68396 63870 90905 101723 157523 79940 114960 115464 99278 160197 FALSE FALSE TRUE 83610.45424 71339.0409 124534.5424 107279.8699 141839.457 84125.53479 90397.85686 87146.27296 119202.184 120262.8361 0.69523102 0.593192737 1.035519753 0.892045069 1.179412208 0.699513977 0.751669092 0.72463178 0.991180549 1 16.87583136 -4.748538133 24.99612434 0.895328199 0.644211774 0.341385096 0.146231478 281.0585832 544540.58 0.038901786 0.101510206 1.78E-05 4.748538133 -0.251116425 IHS(ph)GEKPYGCVECGK ddPTM_HeLa_A486_30min_R1 1 IHSGEKPYGCVECGK 15 1 P17028 P17028 ZNF24 Zinc finger protein 24 1 0 IHS(0.999)GEKPY(0.001)GCVECGK 100.02 0.00035435 146790000 174660 181200 63698 153530 155250 259570 326530 307410 146090 376000 TRUE FALSE FALSE 162417.2359 166841.0521 88363.57149 357425.599 135777.0974 227546.8925 244828.7403 237419.4537 158753.1988 281847.1527 0.576259985 0.591955784 0.313515928 1.268154018 0.481740178 0.807341463 0.868657845 0.842369531 0.563259899 1 18.10455347 -5.216378869 24.99991757 0.812279059 0.503715156 0.337508638 0.216254798 538.3130916 298659.4336 0.055811207 0.096667331 6.08E-06 5.216378869 -0.308563903 IHS(ph)PIIR ddPTM_HeLa_A485_30min_R1 7 IHSPIIR 7 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR ;;;;;; 118.67 0.0016059 4607683000 682962 765721 682889 873190 1016065 684358 1041324 978377 605742 1065147 TRUE FALSE FALSE 834884.5407 855265.4101 935518.0585 920890.1587 914902.001 720189.9267 818836.6206 738428.5067 727308.8632 799625.4555 1.044094501 1.06958252 1.169945319 1.151651879 1.144163176 0.900659079 1.024025204 0.923467983 0.909561918 1 19.60896487 -6.25624747 24.99874378 0.951289732 1.118305111 0.729155847 0.050070283 239.1168946 1151335.385 0.017538992 0.017041109 5.54E-07 6.25624747 0.167015379 IHS(ph)PIIR ddPTM_HeLa_A486_30min_R1 6 IHSPIIR 7 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR ;;;;; 118.67 0.0016059 3907321000 864506 837081 578548 330318 935195 816052 1014962 972513 677525 1040865 TRUE FALSE FALSE 803908.5937 770747.653 802577.2797 768996.9973 817894.1228 715375.8012 761007.7724 751093.0197 736253.4125 780225.6291 1.030353995 0.987852262 1.028647675 0.985608481 1.048278975 0.916883238 0.975368847 0.962661302 0.943641666 1 19.57353186 -6.257159546 24.99999812 0.958355957 1.013574032 0.526068985 0.026712537 284.4936933 1661827.857 0.008349557 0.008078063 5.53E-07 6.257159546 0.055218075 IHS(ph)PIPDMSK ddPTM_HeLa_A485_30min_R1 3 IHSPIPDMSK 10 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 IHS(1)PIPDMSK;IHS(1)PIPDMSK;IHS(1)PIPDMSK ;; 86.772 0.0027437 658040000 826050 710220 524831 1295560 1042740 850970 1312030 1222050 679930 1664480 TRUE FALSE FALSE 1009801.973 793274.0509 718987.8269 1366333.162 938921.1443 895525.4734 1031704.072 922340.3214 816385.7143 1249555.768 0.808128775 0.634844855 0.575394748 1.093455128 0.751403953 0.716675074 0.825656684 0.738134579 0.653340759 1 20.25298386 -11.22693123 2.314676984 1.815753542 0.756666726 0.229296114 0.134603572 15726022.14 3124594.289 67057408.88 0.033934296 5.93E-12 11.22693123 -1.059086816 IHS(ph)PIPDMSK ddPTM_HeLa_A486_30min_R1 3 IHSPIPDMSK 10 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 IHS(1)PIPDMSK;IHS(1)PIPDMSK;IHS(1)PIPDMSK ;; 100.22 0.0012181 576610000 1356710 1186790 572071 596349 1171880 1432690 1817510 1680660 931410 1994400 TRUE FALSE FALSE 1261611.635 1092744.438 793592.2118 1388330.61 1024891.883 1255939.274 1362749.774 1298010.407 1012145.369 1494989.259 0.843893445 0.730937986 0.530834725 0.92865591 0.685551336 0.840099196 0.91154486 0.868240624 0.677025178 1 20.51170369 -6.379391643 6.393435673 0.856083993 0.741964084 0.182997044 0.122140738 0.454200693 22.19628877 0.042847326 0.037648567 4.17E-07 6.379391643 -0.114119909 IHSMT(ph)IEAPITK ddPTM_HeLa_A486_30min_R1 1 IHSMTIEAPITK 12 0 A0A2R8Y4E6;O95263-2;O95263-3;O95263-6;O95263-4;O95263;O60658-6;O60658-2;O60658 A0A2R8Y4E6;O60658-6 PDE8B;PDE8A "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B;High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8A" 1 0 IHS(0.36)MT(0.64)IEAPITK 123.02 6.12E-05 47042000 127360 126150 60999 57940 104830 139370 183680 186980 105490 190030 TRUE FALSE FALSE 118432.7217 116153.4146 84619.44641 134887.2481 91681.2439 122175.9464 137721.3212 144408.7357 114633.9581 142445.2511 0.831426255 0.81542497 0.594048912 0.946940997 0.643624432 0.857704595 0.966836874 1.013784135 0.804758019 1 17.120048 -6.532415488 5.583753096 0.944320354 0.767414048 0.391272514 0.105849306 0.172047194 18.22577794 0.038346444 0.030684514 2.93E-07 6.532415488 -0.176906306 IHVCLYFISPTGHSLK ddPTM_HeLa_A485_30min_R1 1 IHVCLYFISPTGHSLK 16 0 E7EW69;E7EX04;B5ME97;Q9P0V9;Q9P0V9-2;Q9P0V9-3 E7EW69 10-Sep Septin-10 0 0 138.19 2.39E-08 7203800 18403 16156 14759 12221 21058 14141 27193 24206 8752.8 23660 FALSE FALSE TRUE 22496.68386 18045.30366 20218.96827 12888.60228 18961.39158 14881.40089 21382.9934 18269.44055 10509.40667 17761.99743 1.266562725 1.015950134 1.138327395 0.725627978 1.06752586 0.837822489 1.20386198 1.028569034 0.591679326 1 14.11650621 -3.740562887 0.977221618 0.943028889 1.824663859 0.241961606 0.175031364 7.374700934 2.782134452 0.055811227 8.715788254 0.000181734 3.740562887 0.881634971 IHVFYIDYGNR ddPTM_HeLa_A485_30min_R1 2 IHVFYIDYGNR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ; ; 175.65 2.93E-09 269890000 232760 324950 333580 250410 375040 287060 354560 344680 249750 316410 FALSE FALSE TRUE 284536.659 362950.0758 456985.1234 264089.2642 337699.7008 302090.0177 278805.3595 260146.6896 299872.5342 237534.8101 1.19787352 1.52798689 1.923865909 1.111791843 1.421685102 1.271771567 1.173745269 1.095193961 1.262436163 1 17.85777943 -6.176334006 0.945615042 1.124756898 1.507062485 0.332147892 0.208659265 0.662573316 1.273551503 0.121552479 0.12152588 6.66E-07 6.176334006 0.382305586 IHVFYIDYGNR ddPTM_HeLa_A486_30min_R1 2 IHVFYIDYGNR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ; ; 175.65 2.93E-09 273020000 333680 357590 326110 100236 401980 316390 370410 380150 307680 354300 FALSE FALSE TRUE 310290.7551 329253.2661 452388.5255 233354.4736 351559.9201 277357.0186 277729.5002 293598.1436 334349.9501 265580.9739 1.168347079 1.23974719 1.703392072 0.878656593 1.323739103 1.044340694 1.04574321 1.105493889 1.258937887 1 18.01879227 -5.279452572 24.99956422 1.103752144 1.357420696 0.339686368 0.176096387 960.0701211 1332428.394 0.048556899 0.0721814 5.25E-06 5.279452572 0.253668552 IHVVDSGLTFNLPYPLILRPQR ddPTM_HeLa_A485_30min_R1 2 IHVVDSGLTFNLPYPLILRPQR 22 1 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 0 0 ; ; 250.95 1.07E-52 64316000 17647 21812.1 22987.7 18311.7 26196 21690.1 22894 25109.3 17550.1 26285 FALSE FALSE TRUE 21572.51427 24362.83535 31491.80683 19312.0218 23587.83426 22825.7601 18002.50987 18951.20481 21072.24409 19732.63324 1.093240522 1.234646945 1.595925209 0.978684475 1.195371848 1.156751855 0.912321719 0.960399181 1.067888094 1 14.26829587 -6.148064281 1.097517169 0.986639497 1.268708622 0.334427707 0.153297738 0.569288147 1.441074367 0.079756226 0.080235417 7.11E-07 6.148064281 0.282069125 IHVVDSGLTFNLPYPLILRPQR ddPTM_HeLa_A486_30min_R1 2 IHVVDSGLTFNLPYPLILRPQR 22 1 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 0 0 ; ; 211.29 3.10E-30 59129000 9581.7 8851.4 6898.8 4661.9 12818.1 10332.4 11740 10872.9 8854.5 12010.3 FALSE FALSE TRUE 8910.07231 8149.982828 9570.200116 10853.1388 11210.33437 9057.69354 8802.527827 8397.378024 9622.015189 9002.842706 0.989695433 0.905267713 1.063019807 1.205523539 1.245199404 1.006092613 0.977749819 0.932747389 1.068775219 1 13.1361649 -6.495793949 24.59562045 0.989600449 1.082561036 0.163318143 0.095791086 1213.338706 1101830.729 0.038656796 0.033994732 3.19E-07 6.495793949 0.092960587 IHVYGYSMAYGPAQHAISTEK ddPTM_HeLa_A485_30min_R1 1 IHVYGYSMAYGPAQHAISTEK 21 0 Q9NRX4 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 0 276.08 2.86E-64 21271000 21890 29475 25600 18390 36222 30990 38774 47842 22125 28830 FALSE FALSE TRUE 26759.35498 32921.84485 35070.5053 19394.59913 32615.6105 32612.58848 30489.61815 36108.67449 26565.28456 21643.21158 1.236385593 1.521116436 1.620392851 0.896105417 1.506967225 1.506827596 1.408738164 1.668360278 1.22741879 1 14.40162697 -8.002867121 24.92558048 0.999999976 1.420331502 0.288483706 0.208679475 107.0270644 930459.0966 0.199571054 0.051529024 9.93E-09 8.002867121 0.420331526 IHVYGYSMAYGPAQHAISTEK ddPTM_HeLa_A486_30min_R1 1 IHVYGYSMAYGPAQHAISTEK 21 0 Q9NRX4 Q9NRX4 PHPT1 14 kDa phosphohistidine phosphatase 0 0 161.47 5.03E-17 32541000 22897 26677 22710 5693.8 36989 30760 41053 33470 27943 25837 FALSE FALSE TRUE 21292.03854 24563.01736 31503.92019 13255.45415 32349.49471 26965.14394 30781.10519 25849.61164 30365.12174 19367.24703 1.099383847 1.268276143 1.626659698 0.684426348 1.670319724 1.392306501 1.589338182 1.334707592 1.567859474 1 14.24133128 IIAATFLFK ddPTM_HeLa_A486_30min_R1 1 IIAATFLFK 9 0 Q13907-2;Q13907 Q13907-2 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 0 0 157.86 3.45E-05 0 11179 12479 11429 6860.8 15463 17058 18745 15718 11781 17160 FALSE FALSE TRUE 10395.40983 11490.11859 15854.61488 15972.28913 13523.48635 14953.55739 14054.80274 12139.35452 12802.18657 12863.02431 0.808162185 0.893267269 1.232572877 1.241721134 1.051345782 1.162522672 1.092651495 0.943740308 0.995270339 1 13.65094226 -10.07107873 13.45966122 0.999999992 1.055340698 0.007161212 0.135082586 0 0 0.142026362 0.034446452 8.49E-11 10.07107873 0.055340705 IIAFISWLR ddPTM_HeLa_A485_30min_R1 1 IIAFISWLR 9 0 O95486 O95486 SEC24A Protein transport protein Sec24A 0 0 110.81 0.0091292 3657700 3436.8 4160.8 5318.4 4712.6 5982.3 3138.8 4875 2968.3 3030.9 6441.9 FALSE FALSE TRUE 4201.304303 4647.369366 7285.897477 4970.037405 5386.681207 3303.142714 3833.416425 2240.319771 3639.173829 4836.052884 0.868746559 0.960983984 1.506579364 1.027705346 1.113859037 0.683024523 0.792674629 0.463253778 0.752509105 1 12.23961431 -6.259804697 24.52816786 0.708144646 1.107160659 0.440324383 0.199749307 100.5904443 1509351.492 0.068463774 0.065053427 5.50E-07 6.259804697 0.399016013 IIAFISWLR ddPTM_HeLa_A486_30min_R1 1 IIAFISWLR 9 0 O95486 O95486 SEC24A Protein transport protein Sec24A 0 0 122.13 0.0038139 3239500 2304.2 3766.3 3478.8 1297.1 4513.3 3901.5 3931.1 3712.7 3064.7 3262.8 FALSE FALSE TRUE 2142.687479 3467.844671 4825.884525 3019.714352 3947.199829 3420.172598 2947.497201 2867.399258 3330.350664 2445.773643 0.87607759 1.417892732 1.97315256 1.234666324 1.613885995 1.398401118 1.205139 1.172389467 1.361675752 1 11.25607517 -6.716852 4.381120392 1.197205947 1.448053322 0.146880337 0.272731956 0.415119892 17.03153066 0.112398568 0.08256125 1.92E-07 6.716852 0.250847375 IIAHAQLLEQHR ddPTM_HeLa_A486_30min_R1 1 IIAHAQLLEQHR 12 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 0 97.911 0.0026632 11651000 13650 8702.5 7634.1 2040.1 10191 9813.8 11370 12112 10016 12336 FALSE FALSE TRUE 12693.20549 8012.882206 10590.22797 4749.455901 8912.749753 8603.073135 8525.10574 9354.362003 10884.19494 9246.985306 1.372685807 0.866539952 1.145262766 0.513622088 0.963854646 0.930365179 0.921933523 1.011612076 1.177053341 1 13.17476738 -9.489773775 12.20438328 1.000022081 0.97241116 0 0.214382322 0 0 0.202679856 0.049157086 3.24E-10 9.489773775 -0.027610921 IIALDGDTK ddPTM_HeLa_A485_30min_R1 2 IIALDGDTK 9 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 209.11 4.28E-12 116509000 375060 388960 314410 474920 480030 464690 611530 627160 369530 657490 FALSE FALSE TRUE 458490.8031 434445.4885 430723.3427 500863.677 432236.5277 489020.4499 480871.6198 473348.0267 443691.2815 493589.8432 0.928890271 0.880175098 0.872634129 1.014736595 0.875699801 0.99074253 0.974233215 0.958990614 0.89890683 1 18.91295318 -5.236434249 24.99518004 0.955816462 0.892527354 0.322925911 0.043035821 919.8445248 919477.525 0.011208226 0.019402403 5.80E-06 5.236434249 -0.063289108 IIAPPER ddPTM_HeLa_A485_30min_R1 2 IIAPPER 7 0 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ; ; 129.2 0.007153 325690000 303890 349900 433140 370830 492320 314470 405390 316760 418230 558660 FALSE FALSE TRUE 371489.2821 390817.7613 593376.5105 391087.5039 443302.8922 330935.1629 318775.1148 239074.1133 502164.9248 419396.3434 0.88577139 0.931857818 1.414834726 0.932500986 1.057002282 0.789074984 0.760080816 0.57004339 1.1973517 1 18.67795476 -6.255376523 23.64323786 0.829986053 1.052505307 0.151541349 0.206410465 377.603713 1472536.173 0.068644249 0.066854928 5.55E-07 6.255376523 0.222519254 IIAPPER ddPTM_HeLa_A486_30min_R1 1 IIAPPER 7 0 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 104.11 0.0098374 0 70167 78390 76543 31441 248500 71958 88378 81833 71042 64839 FALSE FALSE TRUE 65248.65564 72178.09091 106182.4995 73196.23694 217330.8128 63080.55358 66264.88963 63201.4123 77199.97776 48602.89237 1.342485035 1.485057522 2.184695073 1.506005782 4.471561305 1.297876536 1.363393955 1.300363193 1.588382378 1 15.56875455 IIAPPERK ddPTM_HeLa_A485_30min_R1 4 IIAPPERK 8 1 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 113.71 0.0031729 2740060000 1226890 1400460 1227500 1498660 1964960 1463560 2078470 1818880 1392110 1902900 FALSE FALSE TRUE 1499807.448 1564231.615 1681603.331 1580528.001 1769321.683 1540189.739 1634387.905 1372796.828 1671493.708 1428542.05 1.049886804 1.094984648 1.177146539 1.106392353 1.238550649 1.078154989 1.144095062 0.960977542 1.170069658 1 20.44611207 -10.20089697 5.210333444 0.999992208 1.113561074 0.179748239 0.07264796 6.48E-06 9.94E-07 0.069330599 0.016813987 6.30E-11 10.20089697 0.113568866 IIAPPERK ddPTM_HeLa_A486_30min_R1 3 IIAPPERK 8 1 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;; ;; 126.41 0.0014531 2617252000 988736 1137459 787703 534273 1807345 1409756 1717537 1651456 1024148 1537360 FALSE FALSE TRUE 919430.7122 1047322.606 1092722.697 1243814.545 1580650.937 1235834.638 1287791.076 1275455.52 1112921.973 1152395.049 0.797843337 0.908822549 0.94821884 1.079329996 1.371622464 1.072405369 1.117490983 1.106786705 0.965746923 1 20.13620394 -5.050171206 2.211726206 1.117248819 0.848010254 0.488196256 0.104732817 0.265260857 2.543179043 0.031469386 0.07483172 8.91E-06 5.050171206 -0.269238564 IIAPS(ph)PVK ddPTM_HeLa_A485_30min_R1 5 IIAPSPVK 8 0 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK ;;;; 115.78 0.00096591 1507630000 3988870 3524220 2131420 5069550 3209730 3685700 4722520 4361740 2862920 8786000 TRUE FALSE FALSE 4876180.37 3936346.872 2919920.954 5346486.68 2890158.011 3878677.553 3713515.023 3292016.426 3437481.784 6595811.894 0.739284329 0.596794896 0.442693182 0.810588107 0.438180782 0.588051572 0.563011056 0.499107082 0.521161282 1 22.65311882 -10.01165272 5.246104927 1.000002779 0.574560104 0.555896284 0.1132192 3.53E-06 6.65E-07 0.105202288 0.025515136 9.74E-11 10.01165272 -0.425442675 IIAPS(ph)PVK ddPTM_HeLa_A486_30min_R1 6 IIAPSPVK 8 0 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK;IIAPS(1)PVK ;;;;; 112.75 0.0011032 1210672000 4852480 5154200 3672120 1951860 6249560 6408910 6145770 5532550 5421890 8806150 TRUE FALSE FALSE 4512346.21 4745762.421 5094063.207 4544028.722 5465681.91 5618243.845 4608033.343 4272909.14 5891863.791 6601032.722 0.683581858 0.718942417 0.771707007 0.688381487 0.828004062 0.851115891 0.69807764 0.647309189 0.892566972 1 22.65426032 -7.970457876 5.455070163 0.999527689 0.741206372 0.66718964 0.061649031 0.093186326 7.471903272 0.063044857 0.016399748 1.07E-08 7.970457876 -0.258321316 IIAPSRGS(ph)PLPVLSWANR ddPTM_HeLa_A485_30min_R1 2 IIAPSRGSPLPVLSWANR 18 1 I3L1Q9;I3L413;C9J2U0;P24864-2;P24864-3;P24864 I3L1Q9 CCNE1 G1/S-specific cyclin-E1 1 0 IIAPS(0.024)RGS(0.975)PLPVLS(0.001)WANR;IIAPS(0.003)RGS(0.997)PLPVLSWANR ; 180.66 5.03E-18 742510000 220000 324060 335380 207100 333870 293050 309530 329260 240320 261120 TRUE FALSE FALSE 268938.241 361955.9981 459451.0183 218413.3486 300628.7305 308393.6449 243396.3869 248508.4687 288550.0197 196027.5896 1.371940764 1.846454363 2.343807927 1.114196982 1.533604179 1.573215513 1.241643523 1.267721902 1.471986776 1 17.58069719 -6.571468592 0.367184312 1.061936552 1.852226484 0.303134938 0.308951299 1.890179391 0.587992997 0.373001809 0.544664022 2.68E-07 6.571468592 0.790289932 IIAPSRGS(ph)PLPVLSWANR ddPTM_HeLa_A486_30min_R1 2 IIAPSRGSPLPVLSWANR 18 1 I3L1Q9;I3L413;C9J2U0;P24864-2;P24864-3;P24864 I3L1Q9 CCNE1 G1/S-specific cyclin-E1 1 0 IIAPS(0.007)RGS(0.992)PLPVLSWANR;IIAPS(0.014)RGS(0.986)PLPVLSWANR ; 155.11 7.87E-09 709380000 349680 391570 334030 142622 449360 319300 359560 347220 286890 372790 TRUE FALSE FALSE 325169.2377 360540.5671 463375.3616 332031.2237 392997.0787 279908.0124 269594.285 268165.5858 311757.8562 279440.9575 1.163642011 1.290220912 1.658222781 1.188198132 1.406368924 1.00167139 0.964762959 0.959650254 1.115648396 1 18.09218397 -6.26734881 24.6974716 1.003100741 1.347588898 0.607980664 0.133610566 282.4451296 1180427.765 0.046829418 0.042382574 5.40E-07 6.26734881 0.344488157 IIEDGDGAGAET(ph)PVIENR ddPTM_HeLa_A485_30min_R1 2 IIEDGDGAGAETPVIENR 18 0 A0A5H1ZRS1;Q15154-5 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 IIEDGDGAGAET(1)PVIENR;IIEDGDGAGAET(1)PVIENR ; 410.49 1.85E-162 527020000 353680 427080 449630 356130 495480 438530 473540 527530 385230 415520 TRUE FALSE FALSE 432354.8958 477023.2909 615966.8477 375584.4801 446148.2715 461490.7527 372364.3105 398152.4404 462542.1275 311938.5111 1.386026029 1.529222183 1.974641879 1.204033701 1.430244281 1.479428593 1.193710611 1.276381166 1.482799049 1 18.25090215 -9.247632171 0.125127612 0.542002039 1.801347241 0.349524823 0.200373925 28.22126361 1.023412195 7.465457719 2.790360497 5.65E-10 9.247632171 1.259345202 IIEDGDGAGAET(ph)PVIENR ddPTM_HeLa_A486_30min_R1 2 IIEDGDGAGAETPVIENR 18 0 A0A5H1ZRS1;Q15154-5 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 IIEDGDGAGAET(1)PVIENR;IIEDGDGAGAET(1)PVIENR ; 203.56 1.35E-24 481260000 528330 628700 570400 182006 697570 518770 610850 573550 511150 501070 TRUE FALSE FALSE 491296.7953 578879.5223 791274.1558 423719.1661 610074.266 454769.4319 458008.8691 442965.1855 555456.8936 375598.8106 1.308036079 1.541217666 2.106700377 1.128116368 1.624271028 1.210785069 1.219409796 1.179357264 1.478856902 1 18.51883297 -6.017482105 1.317236083 1.224477218 1.595088385 0.258717377 0.262736364 0.608842755 2.185904358 0.112738204 0.125572185 9.61E-07 6.017482105 0.370611167 IIEQLS(ph)PQAATSR ddPTM_HeLa_A485_30min_R1 3 IIEQLSPQAATSR 13 0 D6R9X7;P0DP91;Q03468 D6R9X7 ERCC6 DNA excision repair protein ERCC-6 1 0 IIEQLS(1)PQAATSR;IIEQLS(1)PQAATSR;IIEQLS(1)PQAATSR ;; 133.86 1.44E-05 794850000 415117 593670 615500 438100 754240 507870 628760 675690 535340 693820 TRUE FALSE FALSE 507458.3445 663094.5423 843199.0631 462032.2937 679145.2173 534461.2879 494420.2895 509975.9681 642777.8276 520863.4428 0.974263699 1.273067925 1.618848615 0.887050723 1.303883439 1.026106353 0.949232081 0.979097257 1.234062088 1 18.99054566 -5.884817459 1.380989925 1.037691043 1.251388404 0.132608394 0.201184377 0.78946335 3.138625597 0.081432552 0.101550018 1.30E-06 5.884817459 0.213697361 IIEQLS(ph)PQAATSR ddPTM_HeLa_A486_30min_R1 3 IIEQLSPQAATSR 13 0 D6R9X7;P0DP91;Q03468 D6R9X7 ERCC6 DNA excision repair protein ERCC-6 1 0 IIEQLS(1)PQAATSR;IIEQLS(1)PQAATSR;IIEQLS(1)PQAATSR ;; 198.44 2.16E-21 605830000 556780 648970 549130 195901 744190 589990 638190 647000 544660 603700 TRUE FALSE FALSE 517752.5972 597543.2537 761767.8422 456067.4283 650846.7509 517203.0324 478508.1119 499692.2239 591871.5673 452529.5906 1.144129816 1.320451228 1.683354764 1.007817915 1.438241309 1.142915388 1.057407343 1.104219999 1.307917934 1 18.78765261 -6.374671674 7.166901612 1.122834598 1.321500521 0.227221493 0.181248723 0.41561658 23.55704344 0.063341333 0.055728602 4.22E-07 6.374671674 0.198665924 IIEVVDAIMTTAQSHQR ddPTM_HeLa_A485_30min_R1 2 IIEVVDAIMTTAQSHQR 17 0 Q01813-2;Q01813;Q5VSR5 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 ; ; 189.1 2.39E-14 9398300 4058.2 5891.6 6623.7 5477.6 7545.4 4997.2 5039.9 6248.1 6424.1 7926 FALSE FALSE TRUE 4960.932589 6580.57137 9074.082265 5776.827418 6794.153482 5258.845665 3963.084193 4715.743678 7713.357945 5950.194067 0.833742989 1.10594231 1.525006103 0.970863698 1.141837292 0.883810781 0.666042846 0.792536113 1.296320399 1 12.53872101 -6.261071746 24.8746765 0.898419331 1.129666077 0.141147875 0.224468428 54.75079218 3704624.358 0.078661884 0.074030102 5.48E-07 6.261071746 0.231246746 IIEVVDAIMTTAQSHQR ddPTM_HeLa_A486_30min_R1 2 IIEVVDAIMTTAQSHQR 17 0 Q01813-2;Q01813;Q5VSR5 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 ; ; 194.58 1.66E-18 10790000 13938.9 15764.6 14806.3 5297.7 19991.5 14250.5 17881.3 16888.5 15572.8 13334.9 FALSE FALSE TRUE 12961.85509 14515.35568 20539.69589 12333.31333 17483.97966 12492.4182 13407.20961 13043.35722 16922.66284 9995.754244 1.296736072 1.452152117 2.054842024 1.233855198 1.749140608 1.249772443 1.34129044 1.304889747 1.692985084 1 13.28709972 -6.278163078 24.92542961 1.338312081 1.561168201 0.164579297 0.267806528 1619.641527 2413947.719 0.091841527 0.08119999 5.27E-07 6.278163078 0.22285612 IIFEDDR ddPTM_HeLa_A485_30min_R1 2 IIFEDDR 7 0 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 ; ; 105.39 0.025439 52761000 56233 74886 93621 57777 101954 73702 84528 95032 82650 88409 FALSE FALSE TRUE 68741.83685 83643.26628 128255.3038 60933.21121 91803.10178 77560.92276 66467.90227 71725.253 99237.09689 66370.26335 1.035732471 1.260252138 1.932421198 0.918079998 1.383196286 1.168609538 1.001471125 1.080683568 1.495204206 1 16.01824938 IIFEDDR ddPTM_HeLa_A486_30min_R1 1 IIFEDDR 7 0 P49773;D6REP8;D6RE99;D6RD60;D6RC06 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 158.38 0.016853 205930000 466150 554200 516430 167890 713590 472200 546760 549240 464410 499930 FALSE FALSE TRUE 433475.2922 510283.1736 716405.5265 390856.4047 624084.8882 413944.765 409954.865 424190.0418 504665.4327 374744.274 1.156722924 1.361683711 1.911718407 1.042995002 1.665362039 1.104605977 1.093958983 1.131945359 1.346692846 1 18.51554691 -6.290996889 24.97556314 1.141094572 1.429546881 0.268126648 0.241324285 987.1802922 834146.4625 0.082952958 0.07316864 5.12E-07 6.290996889 0.288452308 IIFVVGGPGSGK ddPTM_HeLa_A485_30min_R1 1 IIFVVGGPGSGK 12 0 Q5T9B7;P00568 Q5T9B7 AK1 Adenylate kinase isoenzyme 1 0 0 150.61 0.00024898 33974000 31878 34957 33455 34968 47706 39487 49697 49098 32883 53850 FALSE FALSE TRUE 38969.15112 39044.91706 45831.39668 36878.2133 42956.22313 41554.47826 39078.82996 37056.63852 39482.31648 40426.18604 0.963958141 0.96583232 1.133705679 0.912235779 1.062584116 1.027909935 0.966671205 0.916649384 0.976652026 1 15.30300248 -6.853763799 5.899388671 0.956772831 1.012290789 0.119512169 0.059936954 0.399286401 20.68444941 0.024753272 0.016628871 1.40E-07 6.853763799 0.055517958 IIFVVGGPGSGK ddPTM_HeLa_A486_30min_R1 2 IIFVVGGPGSGK 12 0 Q5T9B7;P00568 Q5T9B7 AK1 Adenylate kinase isoenzyme 1 0 0 ; ; 177.06 9.45E-09 70850000 125013 131076 98596 48246 146771 135849 149712 145335 119381 159371 FALSE FALSE TRUE 116250.2343 120689.0604 136775.0117 112319.1262 128361.6126 119089.3316 112252.4741 112245.3931 129729.0412 119463.4643 0.973102823 1.010259171 1.14491081 0.94019646 1.074484265 0.996868225 0.939638531 0.939579258 1.085930682 1 16.86620994 -6.50625928 23.89710569 0.983680817 1.029778981 0.068710346 0.06440354 987.199514 1419497.373 0.022716356 0.019510831 3.12E-07 6.50625928 0.046098164 IIGATDS(ph)SGELMFLMK ddPTM_HeLa_A485_30min_R1 2 IIGATDSSGELMFLMK 16 0 P83916;K7ELA4;B5MD17;J3KS05;Q13185 P83916;Q13185 CBX1;CBX3 Chromobox protein homolog 1;Chromobox protein homolog 3 1 0 IIGATDS(0.989)S(0.011)GELMFLMK;IIGATDS(0.983)S(0.017)GELMFLMK ; 229.54 3.00E-34 115281000 72768 94362 80804 87846 121054 99753 117845 136239 87467 108286 TRUE FALSE FALSE 88954.99055 105396.8151 110696.7621 92644.80454 109001.4387 104975.9128 92666.45304 102826.1716 105020.8246 81292.29306 1.094261057 1.296516694 1.361712876 1.139650526 1.340858212 1.291339054 1.139916831 1.264894466 1.291891527 1 16.31083096 -10.41003703 4.083357325 0.999025439 1.249941541 0.421412941 0.086678152 0.00075005 0.000108367 0.0818555 0.019777453 3.89E-11 10.41003703 0.250916101 IIGATDS(ph)SGELMFLMK ddPTM_HeLa_A486_30min_R1 2 IIGATDSSGELMFLMK 16 0 P83916;K7ELA4;B5MD17;J3KS05;Q13185 P83916;Q13185 CBX1;CBX3 Chromobox protein homolog 1;Chromobox protein homolog 3 1 0 IIGATDS(0.989)S(0.011)GELMFLMK;IIGATDS(0.999)S(0.001)GELMFLMK ; 237.59 2.26E-41 86564000 100685 108968 73032 39468 121359 98387 116112 116568 89140 115611 TRUE FALSE FALSE 93627.50144 100332.9788 101311.9463 91883.4986 106137.0226 86249.01227 87059.54949 90028.01106 96866.72697 86661.2531 1.08038481 1.157760536 1.16905702 1.060260443 1.224734455 0.995243078 1.004596015 1.038849634 1.117762824 1 16.40309948 -6.279942748 24.98418799 1.032050017 1.13687055 0.499185343 0.05364772 714.9678078 965382.8904 0.018503006 0.016344411 5.25E-07 6.279942748 0.104820534 IIGEDS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 IIGEDSPSR 9 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 IIGEDS(0.997)PS(0.003)R 168.05 7.98E-06 439850000 468200 450400 444230 461220 537690 429890 503000 465150 446070 534500 TRUE FALSE FALSE 572349.4747 503070.362 608569.163 486415.2807 484155.6957 452398.3757 395529.9409 351071.2332 535592.1574 401258.9867 1.42638419 1.253729832 1.516649304 1.212222771 1.206591532 1.127447336 0.985722324 0.874924288 1.33477922 1 18.61417418 -5.873616691 1.334990828 1.044896451 1.38299158 0.536136473 0.130872111 0.325395181 1.213164132 0.052077383 0.066052384 1.34E-06 5.873616691 0.338095129 IIGEDS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 IIGEDSPSR 9 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 IIGEDS(1)PSR 136.27 0.00017844 625680000 409860 436460 324820 139950 399600 375870 380100 362220 388520 429730 TRUE FALSE FALSE 381130.9305 401873.32 450599.003 325810.6727 349478.4419 329498.981 284994.9597 279750.4132 422197.2264 322122.8109 1.183185163 1.247577962 1.398842267 1.01144862 1.084922986 1.022898627 0.884740074 0.868458873 1.31067162 1 18.2972513 -5.27951894 24.25903399 1.017101764 1.273639405 0.457652296 0.124616322 470.1298062 630815.9562 0.035330003 0.052531904 5.25E-06 5.27951894 0.256537641 IIGEDS(ph)PSRLDR ddPTM_HeLa_A485_30min_R1 6 IIGEDSPSRLDR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 IIGEDS(0.997)PS(0.003)RLDR;IIGEDS(0.998)PS(0.002)RLDR;IIGEDS(0.997)PS(0.003)RLDR;IIGEDS(0.848)PS(0.152)RLDR;IIGEDS(0.927)PS(0.073)RLDR;IIGEDS(0.942)PS(0.058)RLDR ;;;;; 186.75 2.46E-13 6045360000 2507210 3472330 3404360 2553070 4274840 3144280 3553300 4192140 2848100 3324060 TRUE FALSE FALSE 3064930.215 3878388.788 4663774.431 2692537.749 3849221.92 3308909.639 2794108.427 3164011.092 3419687.546 2495433.017 1.228215782 1.554194708 1.86892391 1.078986184 1.542506609 1.325986158 1.119688811 1.267920666 1.370378416 1 21.25085875 -6.224109712 0.946375684 1.199306316 1.502151732 0.233634247 0.217545356 0.861977623 1.65194678 0.128063911 0.121894988 5.97E-07 6.224109712 0.302845416 IIGEDS(ph)PSRLDR ddPTM_HeLa_A486_30min_R1 6 IIGEDSPSRLDR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 IIGEDS(0.919)PS(0.081)RLDR;IIGEDS(0.998)PS(0.002)RLDR;IIGEDS(0.798)PS(0.202)RLDR;IIGEDS(1)PSRLDR;IIGEDS(0.636)PS(0.364)RLDR;IIGEDS(0.997)PS(0.003)RLDR ;;;;; 207.4 1.27E-17 5418430000 2593660 2730810 2465470 970205 3246690 2342070 2787720 2805150 2043960 2382780 TRUE FALSE FALSE 2411857.828 2514410.67 3420166.012 2258686.271 2839459.866 2053129.216 2090202.971 2166478.581 2221132.099 1786116.379 1.350336325 1.407752989 1.914861793 1.264579564 1.58973956 1.149493527 1.170250156 1.212954882 1.243553962 1 20.76839466 -6.267783144 24.56772801 1.169497643 1.509389171 0.502126072 0.174047916 359.2525904 1391286.068 0.059889457 0.054115332 5.40E-07 6.267783144 0.339891528 IIGEDSPS(ph)RLDR ddPTM_HeLa_A486_30min_R1 1 IIGEDSPSRLDR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 IIGEDS(0.023)PS(0.977)RLDR 126.56 0.00052384 280840000 658520 760860 657910 250800 917060 656570 757250 768620 591170 715970 TRUE FALSE FALSE 612361.1486 700566.6826 912670.3714 583875.0747 802033.7836 575569.0689 567778.0406 593622.0049 642413.0916 536686.4518 1.141003553 1.305355632 1.700565327 1.087925869 1.494417794 1.072449411 1.057932502 1.106087182 1.196998898 1 19.03371994 -6.280426009 24.57173894 1.091526449 1.348980631 0.375248746 0.167115831 736.0939164 952620.043 0.057853006 0.051112712 5.24E-07 6.280426009 0.257454182 IIGNLLYYR ddPTM_HeLa_A486_30min_R1 1 IIGNLLYYR 9 0 P46940;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 172.03 2.41E-06 32581000 18077 18997 18127 5152.5 19645 18052 18416 17504 16904 20438 FALSE FALSE TRUE 16809.89565 17491.60853 25146.25986 11995.28039 17180.94092 15824.92778 13808.12202 13518.72131 18369.25233 15320.19177 1.097237939 1.141735612 1.641380228 0.782971948 1.121457301 1.032945802 0.901302165 0.882412016 1.199022349 1 13.90314674 -5.282732008 24.95918939 0.987435516 1.278279808 0.386671335 0.175635033 810.2958852 949825.8875 0.048884146 0.072586232 5.22E-06 5.282732008 0.290844292 IIGS(ph)PETK ddPTM_HeLa_A485_30min_R1 2 IIGSPETK 8 0 E9PMS6;H0YDG6 E9PMS6 LMO7 1 0 IIGS(0.975)PET(0.025)K;IIGS(0.998)PET(0.002)K ; 89.029 0.004127 514810000 806960 840330 629300 1160550 1203910 926250 1324100 1427800 787440 1603070 TRUE FALSE FALSE 986465.468 938599.2836 862104.2574 1223947.908 1084044.493 974747.0177 1041195.218 1077629.811 945471.9852 1203454.151 0.819695098 0.779921098 0.716358206 1.017029113 0.900777559 0.809957751 0.865172318 0.895447334 0.785631911 1 20.19874975 -14 0.13445266 1.469442926 0.791011768 0.250989094 0.079272539 222.4037892 1.859991813 28.72577308 0.578730963 1.00E-14 14 -0.678431159 IIGS(ph)PETK ddPTM_HeLa_A486_30min_R1 2 IIGSPETK 8 0 E9PMS6;H0YDG6 E9PMS6 LMO7 1 0 IIGS(0.999)PET(0.001)K;IIGS(0.999)PET(0.001)K ; 107.21 0.001354 516540000 859910 884660 483380 390430 908610 991490 1202730 1122810 652200 1255710 TRUE FALSE FALSE 799634.7496 814556.3197 670557.6814 908940.7712 794643.6613 869170.0445 901794.2328 867170.6738 708733.2211 941272.0427 0.849525656 0.865378215 0.712395196 0.965651512 0.844223163 0.923399405 0.958059086 0.92127529 0.752952589 1 19.84425222 -5.279052217 24.99821601 0.905985 0.814727523 0.268193714 0.075584019 1148.081266 1629489.511 0.020877397 0.031037051 5.26E-06 5.279052217 -0.091257477 IIHDFPQFYPLGIVQHD ddPTM_HeLa_A485_30min_R1 1 IIHDFPQFYPLGIVQHD 17 0 P35244;B5MC59 P35244 RPA3 Replication protein A 14 kDa subunit 0 0 85.563 0.0043986 65062000 20304 27412 28760 21558 33132 29048 28755 34924 24208 28896 FALSE FALSE TRUE 24820.55475 30617.59495 39399.5208 22735.65895 29833.26175 30568.90836 22611.25934 26358.83424 29066.32355 21692.75899 1.144186167 1.411420048 1.81625218 1.048075948 1.375263596 1.409175678 1.042341334 1.215098285 1.339909025 1 14.40492593 -7.815712703 0.294730796 0.972520199 1.432178204 0.188603824 0.210387636 3.061233044 0.904468131 0.526281538 0.362369616 1.53E-08 7.815712703 0.459658005 IIIEELSLVAASPT(ph)LSPR ddPTM_HeLa_A485_30min_R1 1 IIIEELSLVAASPTLSPR 18 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;H0Y5V5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 IIIEELSLVAAS(0.168)PT(0.665)LS(0.168)PR 146.88 2.13E-07 288110000 118650 176570 169890 131450 178690 161500 175510 187530 153030 176920 TRUE FALSE FALSE 145043.2832 197218.3255 232739.3807 138630.7807 160898.9962 169955.8903 138010.8547 141537.9735 183741.7173 132817.1 1.092052779 1.484886551 1.752329939 1.04377208 1.211432837 1.27962356 1.039104564 1.065660773 1.383419133 1 17.01908138 -5.289360254 24.98631578 1.152702518 1.447269578 0.346147014 0.186844576 787.264857 704519.5498 0.052727592 0.078225332 5.14E-06 5.289360254 0.29456706 IIIEELSLVAASPTLS(ph)PR ddPTM_HeLa_A485_30min_R1 1 IIIEELSLVAASPTLSPR 18 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;H0Y5V5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 IIIEELSLVAAS(0.002)PT(0.181)LS(0.818)PR 148.15 3.97E-08 1265700000 434890 475230 409290 461810 527540 505230 567420 633640 415920 565950 TRUE FALSE FALSE 531629.7801 530804.0145 560703.403 487037.5109 475016.2653 531683.0616 446186.0816 478238.7965 499391.329 424869.0805 1.251279052 1.249335475 1.319708655 1.146323734 1.118029734 1.251404458 1.050173105 1.125614497 1.175400498 1 18.69665883 -1.000000002 0.078941429 0.852582197 2.003497846 0.575352124 0.061972837 144.7799017 0.836233251 1.86841479 18.20755396 0.099999999 1.000000002 1.150915648 IIIEELSLVAASPTLS(ph)PR ddPTM_HeLa_A486_30min_R1 1 IIIEELSLVAASPTLSPR 18 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;H0Y5V5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 IIIEELSLVAASPT(0.193)LS(0.807)PR 278.64 3.55E-69 47639000 187800 197750 192810 98260 240260 185740 208040 215900 185780 212910 TRUE FALSE FALSE 174636.1898 182079.5698 267471.1956 228754.2458 210124.3505 162825.2873 155986.1916 166744.2831 201883.56 159595.9502 1.094239482 1.140878384 1.675927211 1.43333365 1.31660202 1.020234455 0.977381891 1.04479019 1.264966685 1 17.28406452 -6.219160591 6.017036673 1.058941875 1.348067141 0.396770028 0.166454621 0.22809425 22.401341 0.060261014 0.059481408 6.04E-07 6.219160591 0.289125266 IIIHLK ddPTM_HeLa_A486_30min_R1 2 IIIHLK 6 0 I3L2D5;I3L239;I3L0K7;Q12931-2;Q12931 I3L2D5 TRAP1 "Heat shock protein 75 kDa, mitochondrial" 0 0 ; ; 74.949 0.028391 43202000 132575 155004 113014 44472 167034 143080 163027 153583 130626 149002 FALSE FALSE TRUE 123282.1771 142720.9185 156776.0474 103533.0635 146083.0382 125428.2443 122235.9203 118615.5036 141948.7669 111690.9294 1.10377967 1.277820136 1.40365962 0.926960355 1.30792213 1.122994007 1.094412241 1.061997642 1.270906847 1 16.7691525 -14 0.074667874 0.425348394 1.3647234 0.133246205 0.13352232 541.27068 2.882201083 52.58415298 5.711928494 1.00E-14 14 0.939375006 IIKPCNHVLSLSFPIRR ddPTM_HeLa_A485_30min_R1 2 IIKPCNHVLSLSFPIRR 17 2 P49448;P00367 P49448 GLUD2;GLUD1 "Glutamate dehydrogenase 2, mitochondrial;Glutamate dehydrogenase 1, mitochondrial" 0 0 ; ; 163.8 5.95E-11 69742000 110838 164805 129381 85676 147851 150353 199105 231330 82525 156349 FALSE FALSE TRUE 135493.5307 184077.5111 177244.4159 90356.26294 133130.4353 158225.2506 156564.5902 174595.9548 99087.01054 117374.0717 1.154373609 1.568297908 1.510081514 0.769814505 1.134240581 1.348042615 1.333894172 1.487517237 0.84419846 1 16.84075422 -13.99999952 0.097952138 0.144837504 1.44059424 0.108390412 0.251621288 495.5353714 3.311421349 85.83112172 4.792257817 1.00E-14 13.99999952 1.295756735 IIKPCNHVLSLSFPIRR ddPTM_HeLa_A486_30min_R1 2 IIKPCNHVLSLSFPIRR 17 2 P49448;P00367 P49448 GLUD2;GLUD1 "Glutamate dehydrogenase 2, mitochondrial;Glutamate dehydrogenase 1, mitochondrial" 0 0 ; ; 157.8 9.19E-11 51518000 78905 76813 77424 22432.2 96829 68646 99360 82053 81358 89958 FALSE FALSE TRUE 73374.16697 70726.05813 107404.6463 52223.29526 84683.80393 60177.15446 74499.07708 63371.3231 88410.17695 67431.93127 1.088121986 1.048851142 1.592786151 0.774459433 1.255841295 0.892413332 1.104804144 0.939782117 1.311102549 1 16.0411443 -5.283216613 24.99962246 1.042835432 1.22381306 0.171774675 0.203334995 1475.463552 1693785.415 0.054516744 0.080944588 5.21E-06 5.283216613 0.180977628 IILDLISES(ph)PIK ddPTM_HeLa_A486_30min_R1 2 IILDLISESPIK 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IILDLISES(1)PIK;IILDLISES(1)PIK ; 236.92 1.15E-27 1658286000 2188620 2437470 1403960 1212380 1896000 2745900 2951070 2590820 2158360 3506620 TRUE FALSE FALSE 2035209.04 2244316 1947610.911 2822481.91 1658186.001 2407138.776 2212681.073 2000946.843 2345448.383 2628539.528 0.774273705 0.853826232 0.740947926 1.073783324 0.630839287 0.915770431 0.841791059 0.761239016 0.892300975 1 21.32583 -8.01121144 19.80577553 1.00000001 0.827747116 0.193978291 0.110792057 54.1151371 95601.80411 0.09894375 0.025547166 9.75E-09 8.01121144 -0.172252894 IILDLISES(ph)PIKGR ddPTM_HeLa_A485_30min_R1 2 IILDLISESPIKGR 14 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IILDLISES(1)PIKGR;IILDLISES(1)PIKGR ; 258.92 5.66E-42 15667900000 1867900 2228860 1770500 2387490 2908950 2680140 3448160 3829410 2015700 3573940 TRUE FALSE FALSE 2283407.911 2489505.788 2425481.627 2517912.533 2619324.724 2820467.986 2711432.447 2890241.193 2420232.501 2683022.531 0.851058045 0.927873605 0.904010905 0.938461196 0.976258937 1.051227842 1.010588773 1.077233292 0.902054482 1 21.35542774 -5.664652955 1.735369466 1.013317339 0.895380961 0.534585409 0.046368553 0.267114595 1.654669034 0.015499066 0.022348962 2.16E-06 5.664652955 -0.117936379 IILDLISES(ph)PIKGR ddPTM_HeLa_A486_30min_R1 4 IILDLISESPIKGR 14 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IILDLISES(1)PIKGR;IILDLIS(0.201)ES(0.799)PIKGR;IILDLISES(1)PIKGR;IILDLIS(0.391)ES(0.609)PIKGR ;;; 267.39 1.68E-42 14763646000 313339 289047 195797.4 149032.7 353956 335801 436093 416751 243719 418192 TRUE FALSE FALSE 291375.5542 266141.863 271615.3969 346955.6573 309559.538 294373.2868 326977.9189 321865.8949 264844.7592 313474.0012 0.92950469 0.849007771 0.866468657 1.106808399 0.987512638 0.939067628 1.04307827 1.026770621 0.844869935 1 18.25798627 -5.213169918 24.99639737 0.993364725 0.878395028 0.363657757 0.067195289 414.677021 214740.3474 0.018017704 0.031207498 6.12E-06 5.213169918 -0.114969697 IILDLISESPIK ddPTM_HeLa_A485_30min_R1 1 IILDLISESPIK 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 254.57 6.04E-41 0 34547 35409 30821 37773 45789 41194 52556 49316 33739 53340 FALSE FALSE TRUE 42231.86096 39549.77453 42222.97047 39836.44334 41230.08639 43350.85414 41326.98126 37221.17368 40510.10783 40043.31965 1.054654343 0.98767472 1.054432321 0.994833687 1.029637072 1.082598908 1.032056823 0.929522677 1.01165708 1 15.28927396 -7.154724231 12.0026111 0.977962512 1.033013889 0.353446062 0.032982026 0.684766198 73.37900855 0.015149763 0.008745292 7.00E-08 7.154724231 0.055051377 IILDLISESPIK ddPTM_HeLa_A486_30min_R1 2 IILDLISESPIK 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 338.82 4.83E-118 0 85678 94944 65909 35905 97706 97310 117808 110191 82270 109717 FALSE FALSE TRUE 79672.41464 87420.29166 91430.7299 83588.65454 85450.80241 85304.88158 88331.19235 85102.91475 89401.22984 82243.14906 0.968742267 1.062949226 1.111712416 1.016360092 1.039002074 1.037227812 1.074024929 1.034772084 1.087035587 1 16.32760789 IILNAVFGFINNPKPK ddPTM_HeLa_A485_30min_R1 2 IILNAVFGFINNPKPK 16 1 A0A494BZT7;O14656-2;O14656 A0A494BZT7 TOR1A Torsin-1A 0 0 ; ; 219.52 1.05E-24 15706100 33276 23789 19655.9 39995 36297 20860 45187 29193 13247.4 56488 FALSE FALSE TRUE 40678.1314 26570.91661 26927.43536 42179.82558 32683.14323 21952.19734 35532.42831 22033.37098 15906.03167 42406.58118 0.959241001 0.626575307 0.634982463 0.99465282 0.770709223 0.517660154 0.837898914 0.519574329 0.375084037 1 15.37200056 -6.106394643 8.336823683 0.632232481 0.791804874 0.119185001 0.197634195 0.667171167 47.32416555 0.064462277 0.064536034 7.83E-07 6.106394643 0.159572393 IILNAVFGFINNPKPK ddPTM_HeLa_A486_30min_R1 2 IILNAVFGFINNPKPK 16 1 A0A494BZT7;O14656-2;O14656 A0A494BZT7 TOR1A Torsin-1A 0 0 ; ; 222.29 7.82E-25 8607400 16371.2 16714.1 7009.5 10861.6 13061.6 14985.2 27385.2 20049.1 10424.4 28733.7 FALSE FALSE TRUE 15223.66342 15389.61384 9723.766121 25286.35371 11423.29233 13136.47838 20533.13331 15484.3576 11327.99539 21538.5945 0.706808581 0.714513375 0.451457783 1.174002033 0.53036387 0.60990416 0.953318162 0.718912165 0.525939396 1 14.39463649 -10.96936872 3.060057416 1.229714145 0.714945004 0.153362189 0.204423495 18790526.27 60022854.14 29441679.08 0.047826605 1.07E-11 10.96936872 -0.514769142 IILNSHS(ph)PAGSAAISQQDFHPK ddPTM_HeLa_A485_30min_R1 3 IILNSHSPAGSAAISQQDFHPK 22 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 IILNSHS(1)PAGSAAISQQDFHPK;IILNSHS(1)PAGSAAISQQDFHPK;IILNSHS(1)PAGSAAISQQDFHPK ;; 214.47 3.82E-28 1766360000 426047 483324 379928 452476 599670 455670 659820 704900 432976 656420 TRUE FALSE FALSE 520819.6853 539844.5374 520479.1773 477193.6182 539964.7492 479528.1766 518844.0668 532022.1698 519870.3117 492786.5745 1.056886921 1.095493598 1.056195936 0.968357587 1.095737541 0.97309505 1.052877845 1.079619854 1.05496038 1 18.91060343 -5.001414501 24.85756551 1.034608793 1.0761039 0.159903477 0.040776033 93.25065735 1638860.239 0.010457981 0.02124688 9.97E-06 5.001414501 0.041495107 IILNSHS(ph)PAGSAAISQQDFHPK ddPTM_HeLa_A486_30min_R1 4 IILNSHSPAGSAAISQQDFHPK 22 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 IILNSHS(1)PAGSAAISQQDFHPK;IILNSHS(1)PAGSAAISQQDFHPK;IILNSHS(1)PAGSAAISQQDFHPK;IILNSHS(1)PAGSAAISQQDFHPK ;;; 321.67 6.58E-103 2723340000 1518980 1574160 1130710 273740 1643440 1472660 1766830 1616410 1262070 1429700 TRUE FALSE FALSE 1412507.346 1449417.829 1568551.193 637280.5541 1437304.431 1290978.182 1324750.446 1248388.729 1371467.244 1071693.814 1.318013902 1.35245516 1.463618781 0.594647973 1.34115212 1.204614756 1.236127734 1.164874437 1.279719287 1 20.03146135 IILS(ph)PFATTTKYPTFQDRPVSSLK ddPTM_HeLa_A486_30min_R1 1 IILSPFATTTKYPTFQDRPVSSLK 24 2 Q9P0V3 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 IILS(0.98)PFAT(0.011)T(0.004)T(0.004)KYPTFQDRPVSSLK 51.025 0.017035 102930000 71712 65015 38211 33650 85021 61869 75052 84902 52272 100260 TRUE FALSE FALSE 66685.35912 59862.97462 53007.32253 78338.90058 74356.87339 54236.23182 56273.19578 65571.668 56802.97905 75154.24342 0.887313292 0.796534858 0.705313767 1.042374948 0.98939022 0.721665595 0.748769374 0.872494553 0.755818653 1 16.19756694 -3.921498516 0.008301097 1.653486258 1.07E-06 0.035123819 0.116298699 67524.35681 79.1871481 7371.488187 8428.369911 0.000119812 3.921498516 -1.653485187 IILTARPFR ddPTM_HeLa_A485_30min_R1 2 IILTARPFR 9 1 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 207.68 1.92E-12 214380000 129821 196317 196931 101155 216030 176334 216450 224890 149040 143852 FALSE FALSE TRUE 158699.2336 219274.5654 269783.9719 106680.8415 194521.2947 185566.5756 170203.6893 169735.3749 178950.9609 107992.3438 1.469541525 2.030463991 2.498176837 0.987855599 1.801250791 1.718330847 1.576071815 1.571735263 1.657070813 1 16.72056951 -11.2454357 0.163915918 1.03E-10 1.963714229 0.270276829 0.361742742 61.25541497 1.3375353 24.89689863 1.716877468 5.68E-12 11.2454357 1.963714229 IILTARPFR ddPTM_HeLa_A486_30min_R1 2 IILTARPFR 9 1 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 211.52 1.30E-13 198199000 172226 175611 166595 51517 219600 135379 177233 172688 145570 188552 FALSE FALSE TRUE 160153.8468 161694.9448 231105.0456 119934.1795 192055.7203 118677.3154 132887.4288 133370.7122 158188.1248 141337.3519 1.133131791 1.144035477 1.635130717 0.848566765 1.358846177 0.839674112 0.940214508 0.943633868 1.119223777 1 17.10878326 -5.289477964 24.99003901 1.009701938 1.288093157 0.336636061 0.190593602 834.8924159 744115.3808 0.052972018 0.078587832 5.13E-06 5.289477964 0.27839122 IINDLLQSLR ddPTM_HeLa_A485_30min_R1 2 IINDLLQSLR 10 0 A0A087WTP3;Q92945 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 0 ; ; 318.87 1.80E-71 111831000 103427 153188 155982 95766 162728 131598 165375 174105 124320 142703 FALSE FALSE TRUE 126433.9793 171102.004 213686.2328 100997.4541 146526.2289 138488.2678 130041.2803 131405.4758 149269.8837 107129.7684 1.180194649 1.597147148 1.994648509 0.942758074 1.367745223 1.292715087 1.213866904 1.226600951 1.393355796 1 16.70899989 -5.273337236 24.99960207 1.225502276 1.591311835 0.37474185 0.227065981 803.8872342 1689114.3 0.063426728 0.094927638 5.33E-06 5.273337236 0.365809559 IINDLLQSLR ddPTM_HeLa_A486_30min_R1 2 IINDLLQSLR 10 0 A0A087WTP3;Q92945 A0A087WTP3 KHSRP Far upstream element-binding protein 2 0 0 ; ; 270.06 2.24E-45 93074000 97965 110219 101358 29980 134637 95200 112709 118034 92265 109588 FALSE FALSE TRUE 91098.15939 101484.845 140606.5321 69794.95511 117749.572 83455.19192 84508.01609 91160.23486 100262.6045 82146.4515 1.108972545 1.23541362 1.711656797 0.849640536 1.433410328 1.015931795 1.028748224 1.109728213 1.220534821 1 16.32591064 -5.887477025 1.272763793 1.089375196 1.29602385 0.122890482 0.220070534 0.941567447 3.202489571 0.090793363 0.114771187 1.30E-06 5.887477025 0.206648654 IINEPTAAAIAYGLDKK ddPTM_HeLa_A485_30min_R1 1 IINEPTAAAIAYGLDKK 17 1 P11142;E9PKE3;P11142-2;E9PN89;P54652;E9PI65 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 198.38 1.38E-24 293870000 138230 118960 91308 171680 170930 164620 242240 269070 124190 227940 FALSE FALSE TRUE 168978.7866 132871.3372 125086.6288 181058.4437 153911.609 173239.2486 190483.4451 203080.1606 149113.7939 171118.7529 0.987494262 0.776486124 0.730993107 1.058086508 0.89944326 1.012391954 1.113165225 1.186779106 0.871405333 1 17.38463835 -5.695703499 1.323428417 1.04866593 0.836966204 0.307207801 0.113856401 0.481764897 1.761533023 0.044087355 0.066767643 2.02E-06 5.695703499 -0.211699727 IINEPTAAAIAYGLDKK ddPTM_HeLa_A486_30min_R1 1 IINEPTAAAIAYGLDKK 17 1 P11142;E9PKE3;P11142-2;E9PN89;P54652;E9PI65 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 102.39 0.00040705 17661000 16841 25008 17411 12898 34335 27189 33874 33864 24316 26984 FALSE FALSE TRUE 15660.53287 23026.275 24153.00548 30027.19583 30028.38414 23834.69762 25398.36692 26153.90645 26423.73046 20227.03076 0.774237853 1.138391258 1.194095454 1.484508338 1.484567087 1.178358697 1.255664621 1.293017584 1.306357357 1 14.30399693 -4.25854838 1.725862048 1.298316339 0.593570358 0.555571827 0.134882825 0.679955965 1.993500394 0.037352222 0.793920297 5.51E-05 4.25854838 -0.704745981 IINEPTAAAIAYGLDKR ddPTM_HeLa_A485_30min_R1 2 IINEPTAAAIAYGLDKR 17 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 164.53 1.63E-11 217789000 59373.4 75082.6 64052.7 79796.3 97503.4 84496.2 130382 128230.2 74142.7 120924.9 FALSE FALSE TRUE 72580.80799 83862.85694 87748.45919 84155.36981 87795.61914 88920.29038 102524.8206 96781.54239 89022.45981 90780.54789 0.799519387 0.923797651 0.966599797 0.927019849 0.967119291 0.979508193 1.129369925 1.066104409 0.980633648 1 16.47009557 -2.54760129 0.391620726 1.04274461 8.89E-11 0.653221454 0.048790459 13.6911234 0.569768354 0.040018301 8.849374441 0.002833993 2.54760129 -1.04274461 IIPELVGS(ph)PTQSTSSR ddPTM_HeLa_A485_30min_R1 3 IIPELVGSPTQSTSSR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6;H7C409 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 IIPELVGS(0.956)PT(0.037)QS(0.002)T(0.002)S(0.002)S(0.002)R;IIPELVGS(0.984)PT(0.016)QSTSSR;IIPELVGS(0.977)PT(0.021)QS(0.001)TSSR ;; 155.22 2.49E-08 315961000 116075 155588 163198 135740 194918 157938 172972 205677 150783 185110 TRUE FALSE FALSE 141895.4833 173782.6632 223571.7314 143155.1325 175511.2795 166207.3895 136015.1191 155234.3933 181043.765 138965.4837 1.021084369 1.250545521 1.608829225 1.030148845 1.262984698 1.196033612 0.978769084 1.117071586 1.302796639 1 17.08436706 -6.152937553 1.466720126 1.112975048 1.260892336 0.101129675 0.173672596 0.954021631 4.136078784 0.077058708 0.076060478 7.03E-07 6.152937553 0.147917288 IIPELVGS(ph)PTQSTSSR ddPTM_HeLa_A486_30min_R1 2 IIPELVGSPTQSTSSR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6;H7C409 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 IIPELVGS(0.98)PT(0.02)QSTSSR;IIPELVGS(0.982)PT(0.018)QSTSSR ; 199.08 4.26E-25 267910000 182761 185212 170807 54271 211680 163395 201339 186775 150066 161300 TRUE FALSE FALSE 169950.3977 170535.1266 236948.0448 126345.6307 185129.1206 143236.9862 150961.8527 144250.4098 163073.8417 120909.4301 1.405600849 1.41043694 1.959715173 1.044960931 1.531138807 1.184663479 1.248553173 1.193045155 1.348727238 1 16.88356724 -5.283954466 24.93670662 1.242111134 1.573769712 0.414023524 0.200512249 773.4587367 856646.7724 0.054604711 0.081057648 5.20E-06 5.283954466 0.331658578 IIPGFMCQGGDFTR ddPTM_HeLa_A485_30min_R1 6 IIPGFMCQGGDFTR 14 0 P62937;C9J5S7;F8WE65;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34 P62937 PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C" 0 0 ;;;;; ;;;;; 277.96 1.17E-51 1980425000 195164 177601 213750 167267 220391 241970 284683 269864 169120 234562 FALSE FALSE TRUE 238577.5585 198369.892 292825.0199 176404.3727 198448.0982 254639.175 223858.1514 203679.4309 203060.8327 176090.0102 1.354861404 1.12652553 1.662928065 1.001785237 1.126969656 1.446073941 1.271271159 1.156677944 1.153164978 1 17.42595354 -7.86165187 1.232610074 1.00701204 1.28143524 0.204673857 0.175890796 0.723885347 2.3969164 0.164843863 0.052266654 1.38E-08 7.86165187 0.2744232 IIPGFMCQGGDFTR ddPTM_HeLa_A486_30min_R1 6 IIPGFMCQGGDFTR 14 0 P62937;C9J5S7;F8WE65;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34 P62937 PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C" 0 0 ;;;;; ;;;;; 228.84 5.28E-27 1665608000 113452.8 150119 151571 72022 197728 162073 168624 188034 130998 180431 FALSE FALSE TRUE 105500.3446 138223.0237 210263.3504 167670.8558 172927.1105 142078.0811 126432.4917 145222.763 142353.0121 135249.9032 0.780040075 1.021982423 1.554628473 1.239711466 1.278574745 1.05048564 0.934806523 1.073736539 1.052518403 1 17.04526804 -6.408809141 6.220405862 1.017639667 1.190539169 0.141542564 0.187430114 0.495039091 23.79487225 0.071904584 0.063064559 3.90E-07 6.408809141 0.172899502 IIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK ddPTM_HeLa_A485_30min_R1 1 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 36 0 P61978;P61978-2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IIPTLEEGLQLPS(0.944)PT(0.055)ATSQLPLESDAVECLNYQHYK 169.15 1.15E-14 2239300000 623820 585170 586600 596700 776710 761960 874420 868880 571070 762390 TRUE FALSE FALSE 762586.6068 653600.5412 803607.7505 629296.2101 699378.0252 801855.0474 687593.0236 655785.8176 685678.5108 572340.2037 1.332400907 1.141979083 1.404073565 1.09951425 1.221962079 1.40101122 1.201371176 1.145797226 1.198026115 1 19.12651343 -8.234189161 0.78226384 1.000870812 1.256981887 0.379422357 0.097865912 1.029741235 1.297936911 0.094812714 0.034071863 5.83E-09 8.234189161 0.256111075 IIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK ddPTM_HeLa_A486_30min_R1 1 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 36 0 P61978;P61978-2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IIPTLEEGLQLPS(0.879)PT(0.118)AT(0.002)SQLPLESDAVECLNYQHYK 199.97 1.93E-29 1472700000 180270 257590 180460 71472 268940 267850 276890 291980 192880 267310 TRUE FALSE FALSE 167634.0039 237177.6303 250338.9449 166390.428 235207.0374 234805.3903 207609.1934 225502.5279 209598.9937 200373.8361 0.836606251 1.183675648 1.249359446 0.830399973 1.173841066 1.171836577 1.036109291 1.125409047 1.046039731 1 17.61233461 -3.111938694 13.71566663 1.075845902 0.879997297 0 0.137370773 0 0 0.030201862 0 0.00077279 3.111938694 -0.195848605 IIQQVLQGLDYLHTK ddPTM_HeLa_A485_30min_R1 2 IIQQVLQGLDYLHTK 15 0 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4 H3BLV9 SRPK1 SRSF protein kinase 1 0 0 ; ; 96.673 0.0021082 3179700 11065.9 7279.2 7212.3 15219.3 8030.8 12623.3 14009.1 12238 13902.1 20264.6 FALSE FALSE TRUE 13527.47128 8130.439119 9880.429899 16050.69182 7231.225354 13284.23647 11015.94134 9236.611312 16692.12395 15213.00816 0.889204235 0.534439937 0.649472464 1.055063644 0.475331721 0.873215628 0.724113287 0.607152196 1.097227042 1 13.89301783 -7.768923735 24.99999751 1.048613712 0.72452053 0.372206686 0.167585727 188.8048968 630638.7079 0.1431772 0.039875578 1.70E-08 7.768923735 -0.324093182 IIQQVLQGLDYLHTK ddPTM_HeLa_A486_30min_R1 1 IIQQVLQGLDYLHTK 15 0 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4 H3BLV9 SRPK1 SRSF protein kinase 1 0 0 157.68 5.20E-08 2119500 3007.1 4271.6 3157.4 1335.5 4076.9 3731.2 4890.9 3509.7 3372.4 4377.6 FALSE FALSE TRUE 2796.317819 3933.102859 4380.029838 3109.111492 3565.537186 3270.88248 3667.145089 2710.617926 3664.722347 3281.420467 0.852166873 1.19859765 1.334796891 0.947489517 1.086583455 0.99678859 1.117548064 0.826050168 1.116809743 1 11.68010475 IIS(ph)NASCTTNCLAPLAK ddPTM_HeLa_A486_30min_R1 1 IISNASCTTNCLAPLAK 17 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 IIS(0.975)NAS(0.019)CT(0.004)T(0.002)NCLAPLAK 115.26 0.00010534 617480000 206570 211560 193790 132590 315880 310810 300960 309460 260030 327130 TRUE FALSE FALSE 192090.5097 194795.2151 268830.6779 308676.2207 276259.3849 272465.4223 225656.6248 239002.7135 282569.6098 245214.5187 0.783357 0.794386956 1.09630816 1.258800753 1.126602888 1.111130873 0.920241697 0.974667873 1.152336376 1 17.90368488 -4.759136526 24.77347893 1.082561088 0.788871828 0.618162199 0.091509345 35.78945186 384986.0428 0.026126339 0.062640221 1.74E-05 4.759136526 -0.293689259 IIS(ph)VTPVKNIDPVKNK ddPTM_HeLa_A485_30min_R1 1 IISVTPVKNIDPVKNK 16 2 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 IIS(0.546)VT(0.454)PVKNIDPVKNK 90.654 0.00045688 164800000 127450 391600 118730 43134 281860 580500 725960 1981200 142660 96085 TRUE FALSE FALSE 155800.8128 437394.2135 162653.1678 45490.3012 253797.0287 610894.0824 570852.7155 1495307.594 171290.5534 72132.77781 2.159916996 6.063737274 2.254913407 0.63064674 3.518470194 8.469022002 7.913915598 20.7299322 2.374656275 1 16.13836736 -2.549471456 17.85211144 5.942396368 3.88723784 0 5.728066856 0 0 1.375224283 0 0.002821815 2.549471456 -2.055158528 IISIFSGTEK(ac)GSK ddPTM_HeLa_A486_30min_R1 1 IISIFSGTEKGSK 13 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 0 1 IISIFSGTEK(1)GSK 124.12 0.001588 6001800 8260.7 9198 8122.7 4062.2 11593 9154.6 12097 11231 10515 11815 FALSE TRUE FALSE 7681.667588 8469.116981 11268.02697 9457.006892 10138.89784 8025.198529 9070.202651 8673.946471 11426.44867 8856.447097 0.867353184 0.956265745 1.272296537 1.067810465 1.144804201 0.906141982 1.024135587 0.979393472 1.290184262 1 13.11251234 -4.533658737 24.95951963 1.080171598 0.889581236 0.275062068 0.116555406 228.9981059 530212.3345 0.029587477 0.07844212 2.93E-05 4.533658737 -0.190590362 IISIFSGTEKGS(ph)K ddPTM_HeLa_A486_30min_R1 1 IISIFSGTEKGSK 13 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 IISIFSGTEKGS(1)K 173.28 1.37E-12 178080000 202440 145860 40743 129280 95235 246020 344140 381160 119120 390750 TRUE FALSE FALSE 188250.0014 134301.5224 56519.78074 300970.3734 83289.73827 215668.5537 258032.5321 294378.1887 129445.4175 292903.6566 0.642702804 0.458517739 0.192963725 1.027540512 0.28435882 0.736312261 0.880946776 1.005034188 0.441938551 1 18.16006668 -6.505960635 21.0224141 0.829003997 0.525897042 0.252188748 0.255295713 130.9299801 162695.4275 0.088516828 0.075869838 3.12E-07 6.505960635 -0.303106955 IISLETYNLLR ddPTM_HeLa_A485_30min_R1 2 IISLETYNLLR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 228.05 1.12E-20 42891000 21822 22805 26302 21788 29203 22381 30451 28882 23034 31119 FALSE FALSE TRUE 26676.22861 25471.84637 36032.20432 22978.22327 26295.44678 23552.83455 23944.89509 21798.64421 27656.71252 23361.606 1.141883337 1.090329422 1.542368462 0.983589196 1.125583865 1.008185591 1.02496785 0.933096989 1.183853221 1 14.51185184 IISLETYNLLR ddPTM_HeLa_A486_30min_R1 2 IISLETYNLLR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 206.43 4.30E-14 50418000 22920.4 27021 23076.1 11917.4 31730 28161 32032 30839 25188 27383 FALSE FALSE TRUE 21313.79832 24879.75755 32011.78392 27744.30947 27750.12753 24686.78214 24017.2548 23817.63291 27371.31612 20526.11857 1.038374511 1.212102399 1.559563432 1.351658833 1.35194228 1.202700942 1.17008263 1.160357368 1.333487188 1 14.32517322 -6.363171874 5.143107123 1.180607907 1.314370202 0.166673911 0.143605957 0.458277338 18.58436762 0.053856772 0.047265285 4.33E-07 6.363171874 0.133762296 IISNASCTTNCLAPLAK ddPTM_HeLa_A485_30min_R1 2 IISNASCTTNCLAPLAK 17 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 278.27 2.13E-54 230850000 276710 257810 246100 297650 339910 369200 461060 503360 268290 413470 FALSE FALSE TRUE 338263.1849 287958.6369 337142.6311 313909.8658 306067.3669 388530.7411 362550.7645 379910.1708 322133.3421 310399.5384 1.089767036 0.927703174 1.086156999 1.011309061 0.986043241 1.251711723 1.168013221 1.223939226 1.037802259 1 18.24376689 -6.242230963 24.94391591 1.15227199 1.018228203 0.314649247 0.084007727 824.0116283 1070056.5 0.026374593 0.026338149 5.72E-07 6.242230963 -0.134043787 IISNASCTTNCLAPLAK ddPTM_HeLa_A486_30min_R1 1 IISNASCTTNCLAPLAK 17 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 212.17 2.41E-24 50414000 43053 60625 42844 21262 68643 63838 70605 66912 55462 78229 FALSE FALSE TRUE 40035.20703 55820.85421 59434.3442 49499.01052 60033.15487 55962.31662 52938.88222 51677.59828 60269.49082 58639.94921 0.682729224 0.95192535 1.013546993 0.844117554 1.023758644 0.95433774 0.902778446 0.881269492 1.027788933 1 15.83959623 -4.261264639 24.99999811 0.950574325 0.682729185 0.648592224 0.060135791 8.653309185 1237055.413 0.014368573 0.080855454 5.48E-05 4.261264639 -0.26784514 IISPGSSTPS(ph)STRSPPPGRDESYPR ddPTM_HeLa_A485_30min_R1 1 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 IISPGSSTPS(0.25)S(0.25)T(0.25)RS(0.25)PPPGRDESYPR 132.6 1.85E-06 521820000 75667 125350 145630 92902 219410 156350 210750 273130 135790 131900 TRUE FALSE FALSE 92498.8631 140008.5921 199504.5972 97977.00102 197564.77 164536.2442 165721.5408 206144.4392 163041.8075 99019.75744 0.934145523 1.413946022 2.014795858 0.989469209 1.995205554 1.661650649 1.673620953 2.081851588 1.64655834 1 16.59542879 -4.376967006 3.45925684 1.666540861 0.918276007 0.247999652 0.362546932 0.320831666 6.204193776 0.087028983 0.508654309 4.20E-05 4.376967006 -0.748264854 IISPGSSTPSSTRS(ph)PPPGRDESYPR ddPTM_HeLa_A485_30min_R1 1 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 IISPGSSTPS(0.008)S(0.006)T(0.006)RS(0.979)PPPGRDESYPR 206.4 6.47E-29 568150000 63761 136840 163720 76833 229650 153900 244440 315170 146590 154450 TRUE FALSE FALSE 77944.41448 152842.2477 224286.841 81030.19224 206785.2396 161957.966 192213.3971 237874.0633 176009.2684 115948.4574 0.672233303 1.318191298 1.934366751 0.69884666 1.783423809 1.39681001 1.657748635 2.051550047 1.517995774 1 16.8231241 -5.814078561 24.99999882 1.616434792 1.223094128 0.176553549 0.418338719 175.5221592 83359.82107 0.128081999 0.145231481 1.53E-06 5.814078561 -0.393340663 IISPGSSTPSSTRS(ph)PPPGRDESYPR ddPTM_HeLa_A486_30min_R1 3 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 IIS(0.002)PGS(0.006)S(0.005)T(0.005)PS(0.178)S(0.178)T(0.178)RS(0.446)PPPGRDES(0.001)YPR;IISPGSSTPS(0.01)S(0.042)T(0.042)RS(0.906)PPPGRDESYPR;IISPGSSTPS(0.061)S(0.039)T(0.039)RS(0.862)PPPGRDESYPR ;; 190.23 6.19E-21 1385770000 551570 581120 531970 391940 992850 684320 902870 988000 494250 890550 TRUE FALSE FALSE 512907.7913 535069.9348 737963.0307 912456.1276 868317.495 599895.5561 676962.3764 763053.9679 537091.988 667550.4835 0.768343075 0.801542277 1.105478985 1.366872094 1.300751803 0.898651968 1.014099148 1.143065561 0.804571341 1 19.34851742 -4.748331344 7.393817139 1.093940584 0.782425398 0.347181079 0.160422069 0.159277335 44.5889964 0.044137158 0.109336791 1.79E-05 4.748331344 -0.311515186 IISVT(ph)PVK ddPTM_HeLa_A485_30min_R1 6 IISVTPVK 8 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 IISVT(1)PVK;IISVT(1)PVK;IIS(0.004)VT(0.996)PVK;IIS(0.001)VT(0.999)PVK;IIS(0.001)VT(0.999)PVK;IISVT(1)PVK ;;;;; 183.13 3.39E-05 3748412000 4835570 4108140 3750890 6301310 5252600 4086880 5753430 4877580 4293160 7515640 TRUE FALSE FALSE 5911225.864 4588551.237 5138500.299 6645534.61 4729632.701 4300862.717 4524162.679 3681345.857 5154757.833 5642129.263 1.047694157 0.813265883 0.910737783 1.177841609 0.838270887 0.76227653 0.80185378 0.652474569 0.913619237 1 22.42780829 -5.976781407 24.99915247 0.80253039 0.974295953 0.274398292 0.12339409 287.6550055 309712.8875 0.037725279 0.042774197 1.05E-06 5.976781407 0.171765563 IISVT(ph)PVK ddPTM_HeLa_A486_30min_R1 4 IISVTPVK 8 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 IISVT(1)PVK;IIS(0.001)VT(0.999)PVK;IISVT(1)PVK;IISVT(1)PVK ;;; 152.67 0.00090449 3000083000 5167460 5788870 3383560 1818600 4581290 5200850 6025950 5720480 4310640 5675520 TRUE FALSE FALSE 4805247.739 5330138.858 4693765.047 4233792.707 4006661.889 4559222.005 4518193.574 4418051.581 4684289.746 4254332.851 1.129495013 1.252873023 1.103290507 0.995171947 0.941783831 1.071665562 1.062021645 1.038482821 1.101063295 1 22.02050148 -4.987107063 5.273228103 1.031892513 1.190340499 0.619607238 0.050503577 0.108640587 9.284084129 0.01386708 0.028265286 1.03E-05 4.987107063 0.158447985 IISVT(ph)PVKNIDPVK ddPTM_HeLa_A485_30min_R1 2 IISVTPVKNIDPVK 14 1 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 IIS(0.001)VT(0.999)PVKNIDPVK;IIS(0.006)VT(0.994)PVKNIDPVK ; 184.78 2.26E-17 3624400000 4527600 4605400 3050000 4714500 6166200 5846800 8346900 9042100 4203400 6967000 TRUE FALSE FALSE 5534749 5143961.468 4178321.921 4972041.197 5552271.477 6152929.407 6563516.627 6824510.798 5046983.824 5230255.118 1.058217788 0.983501063 0.798875356 0.950630722 1.061568002 1.176410953 1.254913284 1.304814133 0.964959397 1 22.31844989 -5.963463288 2.863031541 1.165267815 0.939506351 0.374933657 0.114543793 0.25275403 4.225020507 0.039377208 0.043805943 1.09E-06 5.963463288 -0.225761464 IISVT(ph)PVKNIDPVK ddPTM_HeLa_A486_30min_R1 2 IISVTPVKNIDPVK 14 1 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 IIS(0.002)VT(0.998)PVKNIDPVK;IIS(0.017)VT(0.983)PVKNIDPVK ; 152.89 4.93E-08 2771000000 4552700 4085900 2268320 1883830 4348800 3932900 5789800 5646900 2661700 5289400 TRUE FALSE FALSE 4233579.24 3762118.403 3146674.252 4385651.443 3803332.953 3447698.785 4341130.802 4361224.141 2892418.299 3964899.812 1.067764494 0.948855856 0.793632727 1.106119108 0.959250708 0.869555083 1.094890415 1.09995822 0.729506024 1 21.91885298 -5.279442318 24.95145353 0.983395529 0.937961463 0.023725712 0.125361703 3793.120991 5257127.335 0.035241614 0.052381046 5.25E-06 5.279442318 -0.045434066 IISYAQGFMLLR ddPTM_HeLa_A485_30min_R1 2 IISYAQGFMLLR 12 0 P52209-2;P52209;K7ELN9 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 ; ; 285.27 1.63E-51 110011000 29014 38367 40117 33158.9 52426 29687.9 41326 35312 31221.6 42879 FALSE FALSE TRUE 35468.0642 42853.6869 54957.94771 34970.28674 47206.28336 31242.31254 32496.3625 26651.67663 37487.48874 32190.05443 1.101832999 1.33127103 1.707295893 1.086369295 1.466486596 0.970557928 1.009515612 0.827947548 1.164567423 1 14.9743274 -6.272350775 24.54965901 0.984701763 1.344705757 0.472204889 0.18170882 495.5607811 1114963.756 0.0626849 0.055839119 5.34E-07 6.272350775 0.360003994 IISYAQGFMLLR ddPTM_HeLa_A486_30min_R1 1 IISYAQGFMLLR 12 0 P52209-2;P52209;K7ELN9 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 270.06 4.64E-50 49506000 18891 20656 24406 9328.1 24797 21175 24032 25127 19876 23236 FALSE FALSE TRUE 17566.83845 19019.14333 33856.65682 21716.28822 21686.72904 18562.64379 18018.93942 19406.13062 21598.86768 17417.55436 1.008570899 1.091952575 1.943823807 1.246804676 1.245107585 1.065743411 1.034527526 1.114170808 1.240063171 1 14.08825445 -5.976213357 2.63954785 1.096233816 1.350104173 0.170244455 0.241036231 0.518405092 7.31940502 0.087497429 0.096718863 1.06E-06 5.976213357 0.253870357 IITITGTQDQIQNAQYLLQNSVK ddPTM_HeLa_A485_30min_R1 2 IITITGTQDQIQNAQYLLQNSVK 23 0 P61978;P61978-2;P61978-3 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 215.08 1.82E-35 37136000 9712.7 10619.7 8925 10115.8 10890.2 10976.1 12573.4 11340.6 10304.5 16168.4 FALSE FALSE TRUE 11873.25661 11861.58154 12226.7289 10668.40054 9805.93345 11550.79162 9886.990375 8559.300069 12372.51863 12137.91544 0.978195693 0.977233825 1.007317028 0.878931856 0.807876237 0.951628942 0.814554231 0.705170514 1.019328129 1 13.56723305 -5.303956233 6.550940117 0.866726896 0.986530401 0.209086921 0.090136805 0.282086353 33.71606689 0.02474013 0.037384707 4.97E-06 5.303956233 0.119803506 IITITGTQDQIQNAQYLLQNSVK ddPTM_HeLa_A486_30min_R1 2 IITITGTQDQIQNAQYLLQNSVK 23 0 P61978;P61978-2;P61978-3 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 243.23 6.87E-44 38963000 20658.2 23171 15750.4 8284.9 22486.2 24291.3 25583 24520 21360.6 26563 FALSE FALSE TRUE 19210.16686 21334.84557 21849.37669 19287.6659 19665.77112 21294.48638 19181.86281 18937.33127 23212.15401 19911.4519 0.964779814 1.071486182 1.097327146 0.968671998 0.987661333 1.069459248 0.963358318 0.951077368 1.165769032 1 14.2813108 -11.11249972 2.814196133 0.94952811 1.024347438 0.012512301 0.068312037 0.059342054 0.002372245 0.181444182 0.015646691 7.72E-12 11.11249972 0.074819328 IITLAGPTNAIFK ddPTM_HeLa_A485_30min_R1 2 IITLAGPTNAIFK 13 0 H3BRU6;F8VZX2;F8VXH9;F8W0G4;F8W1G6;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-8;Q15366-4;Q15366-7 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 0 ; ; 214.26 9.60E-21 48550000 100242 115620 103452 107062 147307 132892 157018 170240 105774 150645 FALSE FALSE TRUE 122540.4871 129140.7532 141723.1998 112910.526 132640.5979 139850.0196 123469.8216 128488.3731 127001.8716 113091.9739 1.083547159 1.141909092 1.25316762 0.998395572 1.17285598 1.236604286 1.09176467 1.136140511 1.122996329 1 16.78713702 -8.719636642 0.987747657 0.999274924 1.142939698 0.261572408 0.069836384 4.847623346 5.513588484 0.074325805 0.02146091 1.91E-09 8.719636642 0.143664774 IITLAGPTNAIFK ddPTM_HeLa_A486_30min_R1 2 IITLAGPTNAIFK 13 0 H3BRU6;F8VZX2;F8VXH9;F8W0G4;F8W1G6;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-8;Q15366-4;Q15366-7 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 0 0 ; ; 202.16 2.09E-14 62456000 70964 79183 65275 29373 93013 85075 88990 91930 73538 100231 FALSE FALSE TRUE 65989.79006 72908.2507 90551.22813 68381.82843 81346.44223 74579.31148 66723.76076 70999.54582 79912.33305 75132.50521 0.878312122 0.970395576 1.205220402 0.910149718 1.082706373 0.992637092 0.888081138 0.944991061 1.063618641 1 16.19714959 -6.526241702 24.97907339 0.965412991 1.01507309 0.024812154 0.094697782 348.8252284 2590925.779 0.036153978 0.028141165 2.98E-07 6.526241702 0.0496601 IITLTGPTNAIFK ddPTM_HeLa_A485_30min_R1 2 IITLTGPTNAIFK 13 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 0 ; ; 265.77 3.82E-40 86853000 89519 104161 93516 97001 130023 121244 140159 153072 95969 134066 FALSE FALSE TRUE 109432.1927 116341.7229 128111.4599 102299.919 117077.4536 127592.1484 110212.8847 115530.852 115229.098 100645.8135 1.087299997 1.155951935 1.272894077 1.016434916 1.163262033 1.267734284 1.095056822 1.147895257 1.14489708 1 16.61892764 -9.135358272 0.863654732 0.996243475 1.15453409 0.273385543 0.073470398 12.32460836 7.987803979 0.234188639 0.023818795 7.32E-10 9.135358272 0.158290616 IITLTGPTNAIFK ddPTM_HeLa_A486_30min_R1 1 IITLTGPTNAIFK 13 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 0 240.37 2.28E-29 65208000 46927 52556 41163 18535 58459 50393 58624 54213 51212 64323 FALSE FALSE TRUE 43637.65963 48391.27115 57102.41598 43150.41671 51126.52711 44176.02402 43955.65514 41869.88336 55651.09739 48216.10213 0.905043289 1.003632999 1.184301788 0.89493789 1.060362096 0.916208944 0.911638502 0.868379681 1.1542015 1 15.55722741 IITT(ph)PTK ddPTM_HeLa_A486_30min_R1 1 IITTPTK 7 0 C9JKA9;Q9NS87-4;Q9NS87-2;Q9NS87;D6RCT7 C9JKA9 KIF15 Kinesin-like protein KIF15;Kinesin-like protein 1 0 IIT(0.141)T(0.859)PTK 90.601 0.032352 230990000 819630 831430 592230 346820 978530 918770 1013300 1005400 667330 1074500 TRUE FALSE FALSE 762178.1696 765544.4588 821557.3165 807414.4873 855793.643 805421.4988 759761.6224 776492.3677 725174.7017 805438.2062 0.946290061 0.950469512 1.020012845 1.002453672 1.062519305 0.999979257 0.943289773 0.964062 0.900348029 1 19.61941438 -9.599606212 6.709251722 0.999998827 0.979737051 0.02056624 0.043878071 0 0 0.046057866 0.011170673 2.51E-10 9.599606212 -0.020261776 IIVEETKS(ph)NGQTVIEEK ddPTM_HeLa_A486_30min_R1 1 IIVEETKSNGQTVIEEK 17 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 IIVEET(0.147)KS(0.751)NGQT(0.102)VIEEK 63.062 0.0026841 0 75028 156270 268580 40808 222760 62009 120160 122760 118610 87725 TRUE FALSE FALSE 69768.92464 143886.5961 372581.3688 95003.08632 194819.3636 54358.96004 90094.69708 94810.22783 128891.2103 65758.08901 1.060993799 2.188120097 5.665939726 1.444736119 2.962667659 0.826650544 1.370092994 1.441803271 1.960081448 1 16.00488075 -6.253760237 24.71005263 1.350486307 2.737009394 0.240395842 1.191109028 771.5010177 2482548.148 0.404895496 0.397443555 5.57E-07 6.253760237 1.386523087 IIVEKPFGR ddPTM_HeLa_A485_30min_R1 1 IIVEKPFGR 9 1 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 101.9 0.0020808 273650000 277320 296950 294460 266760 307500 266190 305140 352800 215050 268100 FALSE FALSE TRUE 339008.8773 331675.7194 403393.0075 281332.4233 276884.2203 280127.2968 239944.3462 266275.2468 258208.5624 201267.604 1.684368823 1.647933958 2.004261985 1.397802814 1.375701875 1.391815132 1.192165761 1.32299109 1.282911692 1 17.61875545 -5.433321294 5.220726903 1.288097387 1.764130827 0.735876026 0.138090358 0.116994192 5.158998514 0.038625842 0.057493676 3.69E-06 5.433321294 0.47603344 IIVEKPFGR ddPTM_HeLa_A486_30min_R1 2 IIVEKPFGR 9 1 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 120.45 0.00056595 336890000 720200 720250 564880 274549 972310 696850 754290 786560 617810 776240 FALSE FALSE TRUE 669717.6991 663174.7669 783616.664 639163.9469 850353.8134 610879.7321 565558.6639 607477.4585 671362.2682 581864.4515 1.150985762 1.139740991 1.346734041 1.098475676 1.461429395 1.049866048 0.971976656 1.044018855 1.15381214 1 19.15032358 -6.469965826 24.99821826 1.041091359 1.234417279 0.447856953 0.10850529 305.8690226 144504.9461 0.036944077 0.032581316 3.39E-07 6.469965826 0.19332592 IIVLGLLPR ddPTM_HeLa_A485_30min_R1 2 IIVLGLLPR 9 0 P68402;J3KNE3 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 0 0 ; ; 155.19 6.04E-05 85639000 73561 96855 107097 67923 109406 90258 113597 123990 75351 101604 FALSE FALSE TRUE 89924.39067 108181.3497 146716.637 71633.4615 98513.15449 94983.76931 89326.07295 93581.25809 90473.25454 76275.99268 1.178934387 1.418288323 1.92349692 0.939135093 1.291535528 1.245264283 1.171090271 1.226876961 1.186130149 1 16.21894143 -5.285056479 24.99965154 1.17145268 1.498044894 0.398632965 0.198928425 817.3733464 865220.8351 0.05589334 0.082955707 5.19E-06 5.285056479 0.326592213 IIVLGLLPR ddPTM_HeLa_A486_30min_R1 2 IIVLGLLPR 9 0 P68402;J3KNE3 P68402 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 0 0 ; ; 172.52 2.00E-06 80109000 83700 106933 102811 42785 121012 98546 111464 110881 98502 113542 FALSE FALSE TRUE 77833.06223 98459.23964 142622.1726 99605.64223 105833.5466 86388.39646 83574.52825 85635.81682 107040.2327 85110.34417 0.914495917 1.156842222 1.675732533 1.170311825 1.243486295 1.015016416 0.981955003 1.006174016 1.257664197 1 16.37704686 -6.253741973 22.06856792 1.048159871 1.249194115 0.17995415 0.190314898 205.205907 588327.1236 0.066267686 0.064849843 5.58E-07 6.253741973 0.201034244 IIYDS(ph)DS(ph)ESEETLQVK ddPTM_HeLa_A485_30min_R1 1 IIYDSDSESEETLQVK 16 0 P35251-2;P35251;D6RAD2;E0CX09 P35251-2 RFC1 Replication factor C subunit 1 2 0 IIY(0.001)DS(0.976)DS(0.553)ES(0.423)EET(0.048)LQVK 55.213 0.011328 0 55762 39365 46811 48996 68059 37761 54934 46830 38608 43944 TRUE FALSE FALSE 68166.06452 43968.39432 64128.33687 51672.52742 61282.80699 39738.10757 43196.90213 35344.86907 46356.27147 32989.56953 2.066291422 1.332796849 1.943897352 1.566329241 1.857641911 1.204565811 1.309410906 1.07139528 1.405179641 1 15.00972233 -6.269840558 24.78034061 1.209528783 1.730216322 0.619748845 0.217004166 373.5193923 1101739.6 0.069750889 0.062525198 5.37E-07 6.269840558 0.52068754 IIYGGS(ph)VTGATCK ddPTM_HeLa_A485_30min_R1 1 IIYGGSVTGATCK 13 0 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 1 0 IIYGGS(0.641)VT(0.354)GAT(0.006)CK 86.944 0.0018734 174450000 178970 200420 182430 187780 277490 236640 261060 283980 205840 305440 TRUE FALSE FALSE 218781.2591 223857.3756 249918.4485 198037.9459 249862.1213 249030.1045 205282.3983 214333.4597 247150.1999 229299.4292 0.954129105 0.976266606 1.089921808 0.863665237 1.089676159 1.086047642 0.89525909 0.934731763 1.077849172 1 17.80687324 -4.530214253 24.93426493 1.001567357 0.959663425 0.039838942 0.079588962 583.0658239 1981914.022 0.020283045 0.053930998 2.95E-05 4.530214253 -0.041903932 IIYGGSVTGATCK ddPTM_HeLa_A485_30min_R1 2 IIYGGSVTGATCK 13 0 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 212.28 1.08E-20 104380000 68496 75279 71169 64001 90937 92951 104268 98035 73886 101459 FALSE FALSE TRUE 83732.69889 84082.22421 97497.37469 67497.21257 81882.99298 97817.77063 81990.29001 73991.76254 88714.24248 76167.13851 1.099328405 1.10391733 1.28004513 0.886172356 1.075043576 1.284251615 1.076452281 0.971439442 1.164731198 1 16.21688108 -13.99999999 0.171829125 0.587913987 1.127156423 0.067725347 0.115726209 409.6268752 3.877291343 57.3058813 0.416614518 1.00E-14 13.99999999 0.539242436 IIYGGSVTGATCK ddPTM_HeLa_A486_30min_R1 1 IIYGGSVTGATCK 13 0 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 0 230.95 4.81E-29 35774000 45357 57856 44114 18070 66806 53850 58758 57775 48148 60031 FALSE FALSE TRUE 42177.70852 53271.27985 61196.12221 42067.87321 58426.56854 47206.53451 44056.12692 44620.89372 52321.50741 44998.84686 0.93730643 1.183836555 1.359948676 0.934865583 1.298401462 1.049060983 0.979050131 0.991600826 1.16272996 1 15.45760041 -6.493761714 24.6241897 1.029989584 1.14845948 0.135004993 0.134631975 1119.175473 946484.8364 0.04638416 0.04082911 3.21E-07 6.493761714 0.118469897 IK(ac)IIAPPERK ddPTM_HeLa_A485_30min_R1 1 IKIIAPPERK 10 2 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 1 IK(1)IIAPPERK 120.96 0.0015072 0 20719 23984 22867 21293 29754 29768 43257 44283 23561 30292 FALSE TRUE FALSE 25327.87007 26788.72017 31326.45488 22456.18267 26791.58729 31326.60645 34014.78857 33422.52482 28289.47659 22740.76188 1.113765238 1.178004515 1.377546409 0.987485942 1.178130593 1.377553075 1.495762928 1.46971878 1.243998628 1 14.47299297 -6.254907905 20.203182 1.357911399 1.16932399 0.160601446 0.158942681 54.41466713 168314.067 0.052087916 0.050621321 5.56E-07 6.254907905 -0.188587408 IK(ac)IIAPPERK ddPTM_HeLa_A486_30min_R1 1 IKIIAPPERK 10 2 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 1 IK(1)IIAPPERK 97.911 0.0046424 0 17605 19193 15197 6210.4 22616 21367 23805 23357 15180 25851 FALSE TRUE FALSE 16370.98041 17672.07678 21081.68539 14458.12506 19779.29039 18730.95678 17848.73722 18039.12098 16495.81462 19377.74134 0.844834293 0.911978154 1.087933058 0.746120242 1.020722181 0.966622294 0.921094822 0.930919691 0.851276438 1 14.2421128 IK(ac)SK(ac)IPNEHK ddPTM_HeLa_A485_30min_R1 2 IKSKIPNEHK 10 2 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 0 2 ; IK(1)SK(1)IPNEHK;IK(1)SK(1)IPNEHK 96.745 0.0068936 76431000 246308 174351 199226 308470 273276 173716 261249 194495 198640 392970 FALSE TRUE FALSE 301098.3648 194739.8328 272927.9879 325320.935 246067.6819 182811.5011 205431.0169 146794.7963 238505.226 295009.8111 1.020638479 0.660113072 0.925148851 1.102746156 0.834099995 0.619679395 0.696353169 0.49759293 0.808465404 1 18.17040341 -6.043282801 6.78048535 0.694165238 0.915302878 0.247893198 0.161965853 0.289344745 36.11258194 0.052473134 0.053399509 9.05E-07 6.043282801 0.22113764 IK(ac)SK(ac)IPNEHK ddPTM_HeLa_A486_30min_R1 2 IKSKIPNEHK 10 2 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 0 2 ; IK(1)SK(1)IPNEHK;IK(1)SK(1)IPNEHK 117.79 0.0019825 99983000 136244 175815 113707 38382 161443 174410 175670 164216 133085 151916 FALSE TRUE FALSE 126693.9992 161882.7791 157737.3956 89355.23572 141193.3135 152893.0675 131715.508 126827.6016 144620.915 113875.2448 1.112568402 1.421580076 1.385177225 0.784676563 1.239894709 1.342636565 1.156664982 1.113741638 1.269994328 1 16.79709463 -14 0.205910745 0.068199344 1.233283829 0.104578345 0.173630475 358.5713156 3.565148017 138.2405802 0.403967429 1.00E-14 14 1.165084485 IKAEYEGDGIPTVFVAVAGR ddPTM_HeLa_A485_30min_R1 2 IKAEYEGDGIPTVFVAVAGR 20 1 P22234;P22234-2;E9PBS1;D6RF62 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 0 ; ; 202.53 2.27E-23 42192000 73295 91737 73738 80635 116767 110222 135599 164286 88559 124458 FALSE FALSE TRUE 89599.21989 102464.8441 101016.7547 85039.88587 105141.2675 115993.0535 106627.1659 123994.6009 106331.979 93432.91108 0.958968514 1.096667576 1.081168868 0.910170569 1.125312979 1.241458199 1.141216352 1.327097695 1.138057005 1 16.5116432 -5.990730704 23.56867424 1.187698511 1.022140336 0.380432225 0.093671993 96.87272786 246310.4437 0.027792182 0.03146064 1.02E-06 5.990730704 -0.165558174 IKAIGGIILTAS(ph)HNPGGPNGDFGIK ddPTM_HeLa_A485_30min_R1 2 IKAIGGIILTASHNPGGPNGDFGIK 25 1 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 0 IKAIGGIILT(0.004)AS(0.996)HNPGGPNGDFGIK;IKAIGGIILT(0.031)AS(0.969)HNPGGPNGDFGIK ; 263.1 5.96E-62 1682870000 603020 1133290 494940 308540 789070 1152810 1400430 2229500 467200 407170 TRUE FALSE FALSE 737159.7186 1265818.407 678038.9022 325394.7589 710507.4202 1213169.349 1101216.69 1682711.629 560962.7546 305670.0124 2.411619356 4.141127215 2.218205498 1.064529544 2.324426314 3.968885726 3.602632399 5.504994147 1.835190669 1 18.2216155 -6.248263588 23.80863579 3.490170951 2.439088018 0.049072457 1.345001077 918.3794428 1659509.404 0.442616057 0.439735271 5.65E-07 6.248263588 -1.051082933 IKDIAWTEDSK(ac)R ddPTM_HeLa_A485_30min_R1 1 IKDIAWTEDSKR 12 2 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 1 IKDIAWTEDSK(1)R 110.98 0.0095938 27343000 16897 22467 30457 17776 30501 22287 33573 31698 22146 31779 FALSE TRUE FALSE 20655.67936 25094.32021 41724.31172 18747.05787 27464.21334 23453.91286 26399.85428 23924.0158 26590.49906 23857.08015 0.865809195 1.051860498 1.748927843 0.785806886 1.151197597 0.983100728 1.106583627 1.002805693 1.114574747 1 14.54212986 IKDNGDLVLS(ph)SPSNVTLPQVK ddPTM_HeLa_A485_30min_R1 1 IKDNGDLVLSSPSNVTLPQVK 21 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;P04150-13;P04150-12;P04150-11;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 IKDNGDLVLS(0.619)S(0.375)PS(0.006)NVTLPQVK 92.275 0.00047216 1070100000 207080 218540 119130 200920 272680 315210 371980 583880 175110 291050 TRUE FALSE FALSE 253144.2316 244096.352 163201.1444 211895.7508 245531.0218 331713.9082 292503.4342 440682.5145 210252.9708 218496.5914 1.158572909 1.117163203 0.746927645 0.969789732 1.1237293 1.51816514 1.33870937 2.016885077 0.962271171 1 17.73725125 -6.096689226 3.809792358 1.427916065 0.992426662 0.248806858 0.294775009 0.284476384 7.506991251 0.0968073 0.098615807 8.00E-07 6.096689226 -0.435489403 IKDNGDLVLS(ph)SPSNVTLPQVK ddPTM_HeLa_A486_30min_R1 1 IKDNGDLVLSSPSNVTLPQVK 21 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;P04150-13;P04150-12;P04150-11;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 IKDNGDLVLS(0.557)S(0.441)PS(0.002)NVTLPQVK 78.202 0.0017784 651820000 904250 734090 409490 353480 723750 820760 982890 969480 556720 1031700 TRUE FALSE FALSE 840866.7446 675918.0349 568055.4945 822919.3039 632970.5263 719502.9761 736960.526 748750.5676 604976.9378 773355.6048 1.087296374 0.874006771 0.734533365 1.064089145 0.818472799 0.930364986 0.952938754 0.968184058 0.782275236 1 19.56077242 IKDNGDLVLSS(ph)PSNVTLPQVK ddPTM_HeLa_A485_30min_R1 1 IKDNGDLVLSSPSNVTLPQVK 21 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;P04150-13;P04150-12;P04150-11;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 IKDNGDLVLS(0.043)S(0.956)PS(0.001)NVTLPQVK 167.27 6.20E-14 810240000 1227100 1115900 763500 1296900 1422000 1338900 1692200 1832700 974580 1707200 TRUE FALSE FALSE 1500064.162 1246394.798 1045950.422 1367746.363 1280420.687 1409002.734 1330647.646 1383227.451 1170169.267 1281626.459 1.170437885 0.972510196 0.816111758 1.067195792 0.999059186 1.099386427 1.0382492 1.079275043 0.913034573 1 20.28954441 -4.255213208 24.35475519 1.001679497 1.170437993 0.292169544 0.080219254 696.8149782 2725601.767 0.020762629 0.187254466 5.56E-05 4.255213208 0.168758496 IKDNGDLVLSS(ph)PSNVTLPQVK ddPTM_HeLa_A486_30min_R1 1 IKDNGDLVLSSPSNVTLPQVK 21 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;P04150-13;P04150-12;P04150-11;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 IKDNGDLVLS(0.046)S(0.952)PS(0.002)NVTLPQVK 151.95 5.28E-10 826790000 1066100 913420 433450 394240 869390 928870 1208200 1115800 736270 1247900 TRUE FALSE FALSE 991371.8953 841037.2726 601293.4482 917810.6438 760342.9995 814275.4635 905895.581 861756.6977 800090.4764 935417.7175 1.059817317 0.899103424 0.642807418 0.981177314 0.812837928 0.87049395 0.968439622 0.921253341 0.855329615 1 19.83525123 -6.730056176 21.85624235 0.929693324 0.869756127 0.061968349 0.107791764 156.8249955 109216.2287 0.041525579 0.032157848 1.86E-07 6.730056176 -0.059937197 IKDPDASKPEDWDER ddPTM_HeLa_A485_30min_R1 4 IKDPDASKPEDWDER 15 2 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ;;; ;;; 126.63 2.04E-05 2998730000 2888880 2223320 1396158 4195270 2826240 3003750 4741180 4645440 2266330 5486670 FALSE FALSE TRUE 3531501.389 2483317.934 1912654.943 4424446.977 2544849.622 3161021.705 3728188.161 3506138.556 2721161.643 4118944.144 0.857380257 0.60290158 0.46435564 1.074170181 0.617840285 0.767434953 0.905132003 0.851222652 0.660645434 1 21.97384313 -13.99999999 0.094840732 1.767302947 0.57546753 0.161971757 0.167139362 355.3997561 2.314742658 54.79383843 3.341364814 1.00E-14 13.99999999 -1.191835417 IKDPDASKPEDWDER ddPTM_HeLa_A486_30min_R1 3 IKDPDASKPEDWDER 15 2 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ;; ;; 135.23 8.56E-06 3148590000 3546290 3089010 1371790 1731061 2946583 3829460 4866380 4579660 2395392 5686290 FALSE FALSE TRUE 3297713.384 2844225.598 1902983.826 4029997.491 2576995.084 3357020.16 3648760.253 3536971.391 2603026.507 4262405.972 0.773674166 0.667281722 0.446457667 0.945474813 0.604586964 0.787588086 0.856033019 0.829806315 0.610694177 1 22.02323658 -6.018813296 0.91185877 0.814644924 0.660748756 0.146988772 0.148860892 1.197274125 2.174218394 0.080647757 0.096301737 9.58E-07 6.018813296 -0.153896168 IKDTCIQS(ph)PSKECQK ddPTM_HeLa_A485_30min_R1 1 IKDTCIQSPSKECQK 15 2 Q03188;Q03188-2 Q03188 CENPC Centromere protein C 1 0 IKDTCIQS(0.957)PS(0.043)KECQK 70.414 0.0043269 394620000 66439 36883 34521 113620 74898 66769 114390 105170 55809 172700 TRUE FALSE FALSE 81218.12634 41196.14601 47291.75444 119826.7729 67440.89214 70264.9216 89949.64202 79376.8926 67009.35439 129649.0683 0.626445893 0.317751192 0.364767407 0.924239368 0.520180307 0.541962411 0.6937932 0.612244219 0.516851801 1 16.98425231 -14 0.184096424 2.761051999 0.485736283 0.394643273 0.160404407 144.8331355 1.403777619 93.68780297 0.489708401 1.00E-14 14 -2.275315716 IKEELIAQGLLESEDRPAEDS(ph)EDEVLAELR ddPTM_HeLa_A485_30min_R1 2 IKEELIAQGLLESEDRPAEDSEDEVLAELR 30 2 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 0 IKEELIAQGLLESEDRPAEDS(1)EDEVLAELR;IKEELIAQGLLES(0.005)EDRPAEDS(0.995)EDEVLAELR ; 140.94 5.47E-08 53952000 53091 57963 46326 76759 81816 59032 87821 90309 57806 95887 TRUE FALSE FALSE 64900.90979 64741.26864 63463.91519 80952.14981 73670.11177 62122.82424 69057.32592 68160.57615 69407.13397 71984.13557 0.901600183 0.899382456 0.881637526 1.124583204 1.023421497 0.863007158 0.959340907 0.946883304 0.964200423 1 16.13539137 IKEELIAQGLLESEDRPAEDS(ph)EDEVLAELR ddPTM_HeLa_A486_30min_R1 1 IKEELIAQGLLESEDRPAEDSEDEVLAELR 30 2 O75528-2;O75528 O75528-2 TADA3 Transcriptional adapter 3 1 0 IKEELIAQGLLESEDRPAEDS(1)EDEVLAELR 234.63 2.17E-50 70887000 112410 102740 80862 58710 109510 112160 133150 133410 92830 128420 TRUE FALSE FALSE 104530.6395 94598.50823 112173.932 136679.847 95774.23466 98322.83956 99834.46168 103035.4553 100876.5791 96262.79613 1.085888253 0.982710996 1.165288528 1.419861593 0.994924711 1.021400204 1.037103281 1.070355937 1.047929036 1 16.55469071 IKEEPVS(ph)EEGEEDEEQEAEEEPMDTSPSGLHSK ddPTM_HeLa_A485_30min_R1 2 IKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSK 33 1 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 1 0 IKEEPVS(1)EEGEEDEEQEAEEEPMDTSPSGLHSK;IKEEPVS(1)EEGEEDEEQEAEEEPMDTSPSGLHSK ; 345.45 4.73E-148 1264850000 233873 210023 135709 228609 305070 261466 403800 428210 213611 378230 TRUE FALSE FALSE 285897.242 234583.3629 185913.4064 241097.3308 274696.1596 275155.9555 317524.8313 323190.8261 256480.7683 283944.2218 1.006878183 0.826160016 0.654753265 0.849101029 0.967430004 0.969049321 1.11826481 1.138219415 0.903278703 1 18.11524803 -5.952743311 2.097885689 1.041779543 0.819216576 0.43925049 0.101732297 0.287617586 2.566074397 0.038032387 0.043021729 1.11E-06 5.952743311 -0.222562967 IKEEPVS(ph)EEGEEDEEQEAEEEPMDTSPSGLHSK ddPTM_HeLa_A486_30min_R1 3 IKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSK 33 1 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 1 0 IKEEPVS(1)EEGEEDEEQEAEEEPMDTSPSGLHSK;IKEEPVS(0.666)EEGEEDEEQEAEEEPMDT(0.314)S(0.015)PS(0.005)GLHSK;IKEEPVS(1)EEGEEDEEQEAEEEPMDTSPSGLHSK ;; 209.44 1.05E-29 1420710000 164944 136959 64952 19671.7 131766 148155 196016 178904 114841 121764 TRUE FALSE FALSE 153382.2774 126105.87 90103.15387 45796.71175 115238.6796 129877.1424 146970.7236 138171.4646 124795.5103 91273.50185 1.680468857 1.381626293 0.987177571 0.501752544 1.26256446 1.422944664 1.610223346 1.513817941 1.367269885 1 16.47790846 -6.00068651 24.99992198 1.419573261 1.111637346 0.109654955 0.317479334 50.30060678 1831869.697 0.106500009 0.11935957 9.98E-07 6.00068651 -0.307935915 IKEEVLS(ph)ESEAENQQAGAAALAPEIVIK ddPTM_HeLa_A485_30min_R1 1 IKEEVLSESEAENQQAGAAALAPEIVIK 28 1 Q9UJX5;Q9UJX5-3 Q9UJX5 ANAPC4 Anaphase-promoting complex subunit 4 1 0 IKEEVLS(0.824)ES(0.176)EAENQQAGAAALAPEIVIK 127.77 3.66E-06 68346000 63489 57239 37830 96412 84790 76978 107530 108310 58830 123670 TRUE FALSE FALSE 77611.90902 63932.60314 51824.89124 101678.7434 76348.00988 81008.44905 84555.33706 81746.80268 70636.64138 92841.34498 0.835962782 0.688622113 0.558209182 1.095188178 0.822349244 0.872547129 0.910750885 0.880499983 0.760831733 1 16.5024798 -5.250205351 24.99995146 0.896360367 0.693700447 0.451143784 0.106661767 698.6384481 1554731.486 0.028496495 0.048791073 5.62E-06 5.250205351 -0.20265992 IKEEVLS(ph)ESEAENQQAGAAALAPEIVIK ddPTM_HeLa_A486_30min_R1 4 IKEEVLSESEAENQQAGAAALAPEIVIK 28 1 Q9UJX5;Q9UJX5-3 Q9UJX5 ANAPC4 Anaphase-promoting complex subunit 4 1 0 IKEEVLS(0.801)ES(0.199)EAENQQAGAAALAPEIVIK;IKEEVLS(0.5)ES(0.5)EAENQQAGAAALAPEIVIK;IKEEVLS(0.656)ES(0.344)EAENQQAGAAALAPEIVIK;IKEEVLS(0.876)ES(0.124)EAENQQAGAAALAPEIVIK ;;; 229.31 4.50E-39 1050397000 481979 421051 224081.4 187428 440101 481876 617077 537032 375171 636541 TRUE FALSE FALSE 448194.761 387685.3853 310851.7192 436341.8561 384899.4288 422427.0385 462677.8078 414761.5369 407691.1244 477146.9904 0.939322201 0.812507242 0.651479996 0.914480998 0.806668462 0.885318459 0.969675629 0.869253176 0.854435075 1 18.86407425 -6.39384707 4.20258666 0.914206068 0.819692123 0.237488694 0.082454779 0.37621673 11.05478577 0.030666824 0.026644427 4.04E-07 6.39384707 -0.094513945 IKEEVLSES(ph)EAENQQAGAAALAPEIVIK ddPTM_HeLa_A485_30min_R1 3 IKEEVLSESEAENQQAGAAALAPEIVIK 28 1 Q9UJX5;Q9UJX5-3 Q9UJX5 ANAPC4 Anaphase-promoting complex subunit 4 1 0 IKEEVLS(0.184)ES(0.816)EAENQQAGAAALAPEIVIK;IKEEVLS(0.262)ES(0.738)EAENQQAGAAALAPEIVIK;IKEEVLS(0.351)ES(0.649)EAENQQAGAAALAPEIVIK ;; 262.34 1.43E-63 2346400000 1020430 852470 564120 1265730 1130810 1077970 1656610 1654990 881510 1719510 TRUE FALSE FALSE 1247421.133 952158.951 772811.463 1334873.625 1018222.586 1134410.842 1302661.74 1249101.108 1058420.971 1290867.802 0.966343053 0.737611512 0.598675915 1.034090108 0.788789204 0.87879707 1.009136441 0.967644483 0.819929794 1 20.29990983 -5.86504129 1.131814129 0.93878772 0.788613221 0.169756673 0.122689068 0.836033795 2.278265957 0.055123495 0.073331489 1.36E-06 5.86504129 -0.150174499 IKFPLPHR ddPTM_HeLa_A485_30min_R1 1 IKFPLPHR 8 1 M0R3D6;M0R1A7;Q02543;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 72.485 0.033116 11529000 31029 39455 33130 27288 42194 35643 45287 52064 30538 38578 FALSE FALSE TRUE 37931.294 44068.91904 45386.16565 28778.67434 37993.01721 37509.21237 35611.06249 39295.22237 36666.69649 28961.21458 1.309727322 1.521653 1.567136127 0.99369708 1.311858559 1.295153291 1.22961219 1.356822321 1.266062112 1 14.82183449 -13.99999999 0.072347396 2.66E-15 1.668349274 0.33195543 0.144303522 375.3713879 1.944014047 63.04010414 7.322684816 1.00E-14 13.99999999 1.668349274 IKGS(ph)SPGIQDTLEAEDGAFETDEAPEDR ddPTM_HeLa_A485_30min_R1 3 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 0 IKGS(0.599)S(0.4)PGIQDT(0.002)LEAEDGAFETDEAPEDR;IKGS(0.587)S(0.411)PGIQDT(0.002)LEAEDGAFETDEAPEDR;IKGS(0.62)S(0.379)PGIQDT(0.001)LEAEDGAFETDEAPEDR ;; 216.89 1.66E-38 1523290000 413723 430893 385717 488170 564800 482410 654840 719470 410670 679720 TRUE FALSE FALSE 505754.254 481282.1881 528409.7693 514837.491 508566.5289 507668.2417 514928.0844 543018.8544 493087.7021 510278.3133 0.991134134 0.943175862 1.035532484 1.008934688 0.996645391 0.994885004 1.009112226 1.064162125 0.966311304 1 18.9609248 -4.760784249 24.99999288 1.010731753 0.967155 0.28452017 0.026764954 19.55328688 746012.5813 0.006661461 0.015638277 1.73E-05 4.760784249 -0.043576753 IKGS(ph)SPGIQDTLEAEDGAFETDEAPEDR ddPTM_HeLa_A486_30min_R1 4 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 0 IKGS(0.5)S(0.5)PGIQDTLEAEDGAFETDEAPEDR;IKGS(0.58)S(0.42)PGIQDTLEAEDGAFETDEAPEDR;IKGS(0.612)S(0.386)PGIQDT(0.002)LEAEDGAFETDEAPEDR;IKGS(0.498)S(0.498)PGIQDT(0.003)LEAEDGAFETDEAPEDR ;;; 229.5 4.32E-39 1603796000 616658 627728 412606 250465 595954 621485 722957 740789 474346 757528 TRUE FALSE FALSE 573433.4586 577984.5471 572378.0932 583095.1778 521203.8923 544812.4995 542065.5119 572127.516 515462.6932 567838.0581 1.009853867 1.017868632 1.007995299 1.026868787 0.917874181 0.959450484 0.954612859 1.007554016 0.907763553 1 19.11512002 -5.742239949 24.99886029 0.958169125 1.015258849 0.48246447 0.029310345 209.6756253 273009.4702 0.008247746 0.01063072 1.81E-06 5.742239949 0.057089724 IKGSS(ph)PGIQDTLEAEDGAFETDEAPEDR ddPTM_HeLa_A485_30min_R1 1 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 0 IKGS(0.216)S(0.783)PGIQDT(0.001)LEAEDGAFETDEAPEDR 219.07 1.44E-38 374310000 111270 116510 75927 135500 149090 126070 191810 192230 106960 189670 TRUE FALSE FALSE 136021.6276 130134.831 104015.5569 142902.0219 134246.0761 132670.8303 150828.2266 145085.2911 128425.8909 142388.7596 0.955283465 0.913940337 0.730503989 1.003604654 0.94281372 0.931750727 1.059270598 1.018937811 0.901938406 1 17.11947574 IKIEHAPSPS(ph)SGGTLKNDK ddPTM_HeLa_A485_30min_R1 1 IKIEHAPSPSSGGTLKNDK 19 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 IKIEHAPS(0.093)PS(0.737)S(0.134)GGT(0.036)LKNDK 135.58 9.14E-07 663970000 660790 608230 278580 707090 698840 872770 1378600 1758300 557630 1033300 TRUE FALSE FALSE 807780.4558 679357.2076 381638.3347 745716.5363 629261.0358 918466.8876 1084050.848 1327074.168 669541.2261 775717.3265 1.041333522 0.875779339 0.491981192 0.9613251 0.811198892 1.184022654 1.397481803 1.710770306 0.863125269 1 19.5651715 -6.35142474 3.495021388 1.301338235 0.823969591 0.369478861 0.253201158 0.237711484 5.513384493 0.092969958 0.08167315 4.45E-07 6.35142474 -0.477368644 IKIIAPPER ddPTM_HeLa_A485_30min_R1 4 IKIIAPPER 9 1 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 104.22 0.0037602 1001141000 772800 1322230 986230 539927 1117090 1197610 1335620 1656310 909520 718620 FALSE FALSE TRUE 944706.6939 1476853.297 1351077.517 569421.8448 1005868.597 1260315.008 1050253.876 1250097.376 1092052.321 539481.2592 1.751139039 2.737543281 2.504401208 1.055498843 1.864510731 2.33616087 1.946784727 2.317221134 2.024263684 1 19.04121332 -10.55151135 2.28258395 0.898888039 2.069843986 0.34040726 0.442338581 1801155.201 1442563.392 1109633.479 0.120235281 2.81E-11 10.55151135 1.170955947 IKIIAPPER ddPTM_HeLa_A486_30min_R1 3 IKIIAPPER 9 1 P60709;P63267-2;Q562R1;A0A2R8YFE2;P63261;P68133;P68032;P63267;P62736;A6NL76 P60709;P63261;P68133 ACTB;ACTG2;ACTBL2;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;; ;; 88.681 0.010564 379393000 432756 386131 278142 147845 458159 324721 388607 405364 261220 471750 FALSE FALSE TRUE 402422.0392 355532.5733 385846.0313 344190.6317 400692.4261 284660.2245 291373.4183 313071.4662 283862.7599 353620.7294 1.138004663 1.005406481 1.091129561 0.973332735 1.13311351 0.80498738 0.823971544 0.885331204 0.802732239 1 18.43184332 -6.26542157 24.99952393 0.853773111 1.060712759 0.670818417 0.071474978 195.1823399 1225317.315 0.023020978 0.021044583 5.43E-07 6.26542157 0.206939648 IKISFR ddPTM_HeLa_A485_30min_R1 2 IKISFR 6 1 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 ; ; 135.87 0.0041126 313630000 270900 502670 294720 130231 382890 455670 575580 781230 215162 176148 FALSE FALSE TRUE 331160.7704 561452.8839 403749.1923 137345.1898 344768.1272 479528.1766 452602.6309 589632.1176 258343.0398 132237.5454 2.504287035 4.245790273 3.053211486 1.038624767 2.607187892 3.626263443 3.42264846 4.458885833 1.953628518 1 17.01277232 -6.212464196 24.88179325 3.141614497 2.704718268 0 1.156235058 1676.853883 851923.4219 0.38627989 0.386279474 6.13E-07 6.212464196 -0.436896229 IKISFR ddPTM_HeLa_A486_30min_R1 1 IKISFR 6 1 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 105.12 0.011008 62601000 174780 106820 70257 38902 108620 75728 115090 112780 67179 165060 FALSE FALSE TRUE 162528.8246 98355.19417 97462.39195 90565.822 94995.86676 66385.44931 86293.2647 87102.45597 73002.12981 123727.9016 1.313598812 0.794931401 0.787715549 0.731975737 0.767780472 0.536543887 0.697443855 0.703983942 0.590021562 1 16.91681135 IKLEPHEVDQFLNFS(ph)PK ddPTM_HeLa_A486_30min_R1 1 IKLEPHEVDQFLNFSPK 17 1 C9JPH0;H7C1W8;Q70SY1-3;Q70SY1-2;Q70SY1 C9JPH0 CREB3L2 Cyclic AMP-responsive element-binding protein 3-like protein 2;Processed cyclic AMP-responsive element-binding protein 3-like protein 2 1 0 IKLEPHEVDQFLNFS(1)PK 151.82 2.43E-08 73944000 66028 53696 22299 43341 45299 67065 86946 77865 39167 112470 TRUE FALSE FALSE 61399.77817 49440.9334 30933.76999 100900.0383 39617.17702 58791.20217 65191.19118 60136.83928 42562.0271 84306.77994 0.728289922 0.586440775 0.366919126 1.196819976 0.469916857 0.697348448 0.773261548 0.713309645 0.504847026 1 16.36336104 -10.9499736 2.393014917 1.247402153 0.673984597 0.174665589 0.214582955 49003835.34 21854799.13 67436056.3 0.05115728 1.12E-11 10.9499736 -0.573417556 IKLPS(ph)FR ddPTM_HeLa_A485_30min_R1 2 IKLPSFR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IKLPS(1)FR;IKLPS(1)FR ; 98.249 0.0024015 562010000 1095880 816380 532790 1007340 677230 637280 873220 978110 635760 1386480 TRUE FALSE FALSE 1339654.725 911848.5394 729891.1922 1062368.433 609802.6033 670646.9954 686649.4134 738226.9889 763351.2005 1040856.052 1.287070121 0.876056336 0.701241243 1.02066797 0.585866414 0.644322521 0.659696806 0.70924984 0.733387867 1 19.98933913 IKLPS(ph)FR ddPTM_HeLa_A486_30min_R1 2 IKLPSFR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IKLPS(1)FR;IKLPS(1)FR ; 94.692 0.0027929 838950000 1412550 1104700 460080 500510 682160 1016250 1162880 1393630 757630 1270360 TRUE FALSE FALSE 1313537.539 1017159.549 638235.2974 1165212.574 596597.1319 890875.4075 871915.1243 1076330.872 823301.9784 952253.5873 1.379398888 1.068160375 0.670236695 1.223636844 0.626510774 0.935544291 0.915633331 1.130298574 0.864582701 1 19.86098629 -4.359164947 3.629570484 0.923525727 1.39100243 0.390952777 0.172746738 0.232031616 4.972103159 0.041369003 0.239611581 4.37E-05 4.359164947 0.467476703 IKLPS(ph)FRWS(ph)PK ddPTM_HeLa_A485_30min_R1 1 IKLPSFRWSPK 11 2 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 2 0 IKLPS(1)FRWS(1)PK 87.148 0.0020627 56911000 114390 67068 41434 152430 79281 79295 139100 132740 72091 243540 TRUE FALSE FALSE 139835.6609 74911.01919 56762.16081 160756.8649 71387.50527 83446.76359 109380.1487 100185.3069 86559.00244 182829.96 0.764839968 0.409730545 0.310464219 0.879269814 0.390458463 0.456417338 0.598261623 0.547969856 0.473439924 1 17.48014298 -10.40976846 3.269921872 1.00549524 0.531915503 0.414357728 0.165126518 75249109.7 102046698 3877819.718 0.041265172 3.89E-11 10.40976846 -0.473579737 IKLPS(ph)FRWS(ph)PK ddPTM_HeLa_A486_30min_R1 2 IKLPSFRWSPK 11 2 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 2 0 IKLPS(1)FRWS(1)PK;IKLPS(1)FRWS(1)PK ; 76.391 0.0061207 233290000 226378 158354 48256 164391 118663 225443 306210 332380 112528 359390 TRUE FALSE FALSE 210510.0712 145805.4523 66942.01554 382710.5559 103779.1801 197630.1348 229593.0192 256704.3298 122282.0176 269396.4048 0.781413811 0.541230134 0.248488897 1.420622358 0.385228526 0.733603461 0.852249752 0.952886992 0.453911097 1 18.03937107 -13.99999927 0.060057065 1.924737536 0.312380199 0.061463657 0.318260918 1208.032124 5.28794927 169.1638328 28.09547123 1.00E-14 13.99999927 -1.612357337 IKLPSFRWS(ph)PK ddPTM_HeLa_A485_30min_R1 2 IKLPSFRWSPK 11 2 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IKLPS(0.003)FRWS(0.997)PK;IKLPS(0.002)FRWS(0.998)PK ; 82.651 0.0024399 1522250000 1350470 2908400 977910 905150 2173400 4274700 5859800 10826400 1367990 1747530 TRUE FALSE FALSE 1650877.392 3248512.08 1339679.603 954596.0525 1957008.665 4498516.682 4607805.86 8171208.425 1642533.045 1311902.932 1.258383797 2.476183261 1.02117281 0.727642289 1.491732823 3.429001165 3.512307007 6.228516018 1.252023305 1 20.32322955 -6.254634304 6.186940895 3.443213152 1.390758612 0.242401587 1.42508027 0.184918249 33.80615836 0.472667717 0.448518885 5.56E-07 6.254634304 -2.052454541 IKLPSFRWS(ph)PK ddPTM_HeLa_A486_30min_R1 2 IKLPSFRWSPK 11 2 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IKLPSFRWS(1)PK;IKLPS(0.001)FRWS(0.999)PK ; 118.52 0.00010644 592030000 1358990 680940 430870 640430 1360290 767800 1845460 1683720 570760 2388000 TRUE FALSE FALSE 1263731.819 626979.8345 597714.4031 1490953.406 1189669.744 673076.6424 1383706.389 1300373.711 620233.9364 1790029.257 0.705983891 0.350262339 0.333913203 0.83292125 0.664609106 0.376014325 0.773007694 0.726453887 0.346493743 1 20.77155174 -14 0.326002205 5.184004078 0.553601214 0.308675905 0.189963375 440.0693969 3.855420947 1274.559097 0.168519894 1.00E-14 14 -4.630402864 IKLPSFRWS(ph)PKK ddPTM_HeLa_A485_30min_R1 2 IKLPSFRWSPKK 12 3 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IKLPSFRWS(1)PKK;IKLPSFRWS(1)PKK ; 109.07 0.00044354 235698000 242170 295180 110276 233760 338290 513550 874010 1198130 201338 397480 TRUE FALSE FALSE 296039.881 329698.7333 151071.6814 246529.7169 304608.6598 540438.6839 687270.6235 904286.7389 241744.6898 298395.5511 0.992105546 1.10490499 0.506279939 0.826184291 1.02082172 1.811148598 2.303220075 3.03049672 0.810148439 1 18.1868665 -6.253684677 3.412442853 1.967554473 0.858077835 0.339375572 0.610466257 0.240924934 5.97641611 0.215384833 0.201971593 5.58E-07 6.253684677 -1.109476638 IKLQT(ph)PNT(ph)FPK ddPTM_HeLa_A485_30min_R1 2 IKLQTPNTFPK 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 2 0 IKLQT(1)PNT(1)FPK;IKLQT(1)PNT(1)FPK ; 101.2 0.00096363 329980000 845160 642560 450160 1320270 1066500 889720 1457680 1517740 637760 1740760 TRUE FALSE FALSE 1033162.926 717701.8025 616692.9167 1392393.007 960315.5153 936304.3634 1146234.76 1145511.885 765752.5821 1306820.568 0.790592795 0.549196898 0.471903283 1.065481399 0.734848791 0.716475074 0.877117171 0.876564016 0.585966123 1 20.31762964 -13.99985001 0.03617265 2.195626954 1.13E-07 0.173865181 0.167336634 1784.559622 4.826713687 249.9017859 84.07288475 1.00E-14 13.99985001 -2.195626841 IKLQT(ph)PNT(ph)FPK ddPTM_HeLa_A486_30min_R1 2 IKLQTPNTFPK 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 2 0 IKLQT(1)PNT(1)FPK;IKLQT(1)PNT(1)FPK ; 108.71 0.00048107 417400000 848070 715700 304344 612850 671390 969020 1380920 1253910 516370 1697510 TRUE FALSE FALSE 788624.6724 658985.3255 422194.1474 1426745.772 587178.0057 849472.1647 1035399.21 968422.0657 561129.3674 1272442.447 0.619772371 0.517890084 0.331798227 1.121265465 0.461457418 0.667591817 0.813710052 0.761073373 0.440986049 1 20.27916897 -14 0.15745251 2.21679375 0.550741272 0.189924885 0.216262066 230.3883747 2.100193374 88.91037495 0.954167133 1.00E-14 14 -1.666052478 IKLYSESLAR ddPTM_HeLa_A485_30min_R1 2 IKLYSESLAR 10 1 P50395-2;P50395;Q5SX91;Q5SX87;P31150 P50395-2 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 0 ; ; 119.45 0.0017016 30205000 35712 52224 39249 27842 54557 56283 61609 82098 37070 38876 FALSE FALSE TRUE 43656.0112 58331.14251 53768.83839 29362.93796 49125.11352 59229.89085 48445.73385 61963.33678 44509.60897 29184.92866 1.495840943 1.998673466 1.842349488 1.006099357 1.68323569 2.029468413 1.659957248 2.123127916 1.525088839 1 14.83293592 -5.995770624 24.99048177 1.7504843 1.597453091 0 0.37681516 527.2872668 3115586.353 0.115907607 0.130902714 1.01E-06 5.995770624 -0.153031209 IKLYSESLAR ddPTM_HeLa_A486_30min_R1 1 IKLYSESLAR 10 1 P50395-2;P50395;Q5SX91;Q5SX87;P31150 P50395-2 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 0 88.187 0.016996 10919000 25695 25976 19776 10339 30997 22967 29075 28799 18554 29875 FALSE FALSE TRUE 23893.91319 23917.56716 27433.79682 24069.7145 27109.06722 20133.56505 21800.12748 22242.09638 20162.27566 22394.10555 1.066973322 1.068029581 1.225045437 1.074823661 1.210544764 0.899056451 0.973476142 0.99321209 0.900338512 1 14.45083142 -6.266987261 24.99217117 0.954058611 1.128008277 0.68042635 0.06025906 273.7792584 1233320.467 0.020472682 0.018560049 5.41E-07 6.266987261 0.173949666 IKNENTEGS(ph)PQEDGVELEGLK ddPTM_HeLa_A485_30min_R1 6 IKNENTEGSPQEDGVELEGLK 21 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 IKNENT(0.001)EGS(0.999)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENT(0.005)EGS(0.995)PQEDGVELEGLK;IKNENT(0.021)EGS(0.979)PQEDGVELEGLK;IKNENT(0.002)EGS(0.998)PQEDGVELEGLK;IKNENT(0.001)EGS(0.999)PQEDGVELEGLK ;;;;; 325.62 1.85E-103 7289520000 5642701 3579170 2258126 8983980 5443480 4563527 7869400 7806810 4337570 12541090 TRUE FALSE FALSE 6897900.37 3997722.797 3093500.776 9474752.079 4901508.018 4802466.217 6188038.403 5892177.607 5208080.512 9414827.065 0.732663524 0.424619886 0.328577546 1.006364962 0.520615831 0.510096063 0.657265222 0.625840238 0.553178564 1 23.16650316 -10.63874278 2.420236011 1.054355643 0.592677788 0.323696112 0.175376634 7402878.69 5877311.279 2509959.608 0.045835656 2.30E-11 10.63874278 -0.461677854 IKNENTEGS(ph)PQEDGVELEGLK ddPTM_HeLa_A486_30min_R1 7 IKNENTEGSPQEDGVELEGLK 21 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 IKNENT(0.016)EGS(0.984)PQEDGVELEGLK;IKNENT(0.003)EGS(0.997)PQEDGVELEGLK;IKNENT(0.011)EGS(0.989)PQEDGVELEGLK;IKNENT(0.001)EGS(0.999)PQEDGVELEGLK;IKNENT(0.107)EGS(0.893)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENT(0.003)EGS(0.997)PQEDGVELEGLK ;;;;;; 271 9.01E-73 7026800000 2567666 2582662 1153495 1333066 1804994 2883329 3975469 3457474 2299212 4398414 TRUE FALSE FALSE 2387685.873 2378002.457 1600159.156 3103445.017 1578594.822 2527613.184 2980764.608 2670282.646 2498509.547 3297022.506 0.724194593 0.721257575 0.485334617 0.94128718 0.478794069 0.766635102 0.904077726 0.809907315 0.757807853 1 21.6527323 -6.520580578 23.99861445 0.849714263 0.672295639 0.315936417 0.136167938 71.25734881 744134.1728 0.048640242 0.038369451 3.02E-07 6.520580578 -0.177418624 IKPDEDLPS(ph)PGAR ddPTM_HeLa_A485_30min_R1 1 IKPDEDLPSPGAR 13 1 A0A2R8YGX0;P10071 A0A2R8YGX0 GLI3 Transcriptional activator GLI3;Transcriptional repressor GLI3R 1 0 IKPDEDLPS(1)PGAR 87.287 0.00089531 197900000 257370 263040 200320 325140 328970 325650 439100 428450 248250 497650 TRUE FALSE FALSE 314621.0686 293800.2399 274426.704 342901.5749 296216.5917 342700.5304 345282.6979 323371.9657 298071.4979 373595.0136 0.842144721 0.786413708 0.734556656 0.917843018 0.792881545 0.917304884 0.924216559 0.865568206 0.797846564 1 18.51111567 -5.267558482 24.98700417 0.881123064 0.787575896 0.345267662 0.06276934 570.8453017 2331013.107 0.01723342 0.026282277 5.40E-06 5.267558482 -0.093547168 IKPDEDLPS(ph)PGAR ddPTM_HeLa_A486_30min_R1 1 IKPDEDLPSPGAR 13 1 A0A2R8YGX0;P10071 A0A2R8YGX0 GLI3 Transcriptional activator GLI3;Transcriptional repressor GLI3R 1 0 IKPDEDLPS(1)PGAR 98.035 0.0004702 137590000 203690 201360 101110 83183 189560 212040 257890 259400 161590 315540 TRUE FALSE FALSE 189412.3829 185403.5003 140262.4998 193654.2278 165783.6172 185880.6607 193363.1943 200340.2827 175596.7513 236526.7302 0.800807514 0.783858552 0.593009085 0.818741407 0.700908591 0.785875916 0.81751096 0.847009057 0.742397069 1 17.85164371 -10.805147 0.243332116 1.242735498 0.725894921 0.527553116 0.068079859 21.52815802 0.851767003 3.148039982 0.115876404 1.57E-11 10.805147 -0.516840577 IKPGLHSFIFGRPFYTSVQER ddPTM_HeLa_A485_30min_R1 1 IKPGLHSFIFGRPFYTSVQER 21 2 A0A2R8Y5K2;Q96LT7 A0A2R8Y5K2 C9orf72 Protein C9orf72 0 0 133.84 2.59E-09 8384800 11011 17097 14323 12060 16999 14211 20284 21322 10570 16582 FALSE FALSE TRUE 13460.35896 19096.34543 19621.67373 12718.80726 15306.51987 14955.06599 15950.15769 16092.74607 12691.30205 12448.41257 1.0812912 1.534038603 1.576239028 1.021721219 1.229596126 1.201363299 1.281300536 1.292754878 1.019511683 1 13.60367416 -7.62541134 0.259588759 0.945446697 1.393750912 0.239428379 0.170457233 2.988703745 0.809722456 0.517870028 0.4326369 2.37E-08 7.62541134 0.448304216 IKPGLHSFIFGRPFYTSVQER ddPTM_HeLa_A486_30min_R1 2 IKPGLHSFIFGRPFYTSVQER 21 2 A0A2R8Y5K2;Q96LT7 A0A2R8Y5K2 C9orf72 Protein C9orf72 0 0 ; ; 77.847 0.0017225 12916500 17212.2 14141.1 11951.1 4755.7 17320.3 13354.9 16776 14752.3 13173.2 19047.9 FALSE FALSE TRUE 16005.71366 13020.50773 16578.88598 11071.50994 15147.82647 11707.30822 12578.46736 11393.52333 14315.06358 14278.18186 1.120991021 0.911916367 1.16113425 0.775414549 1.060907237 0.819943907 0.880957218 0.797967377 1.002583083 1 13.80152466 -5.258724238 24.98906272 0.898878995 1.049404121 0.311196195 0.107574587 292.8094582 2694887.778 0.027745063 0.045380595 5.51E-06 5.258724238 0.150525126 IKPNLSS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 IKPNLSSSPR 10 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 0 IKPNLS(0.052)S(0.599)S(0.349)PR 88.187 0.0017157 399720000 1288400 1109300 777910 348920 1141900 1014000 1128000 1109800 941690 1250200 TRUE FALSE FALSE 1198089.813 1021395.028 1079137.585 812303.3934 998672.2542 888902.9896 845762.4692 857122.7668 1023316.447 937141.7826 1.278450962 1.089904481 1.151520085 0.866788152 1.065657591 0.948525619 0.902491475 0.914613757 1.091954778 1 19.83790781 -4.348299268 0.9316873 0.965534686 1.399100115 0.581162808 0.07897996 1.274896146 0.967952724 0.026675015 0.545911255 4.48E-05 4.348299268 0.43356543 IKPNLSSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 IKPNLSSSPR 10 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 0 IKPNLS(0.047)S(0.233)S(0.72)PR;IKPNLS(0.004)S(0.328)S(0.668)PR ; 98.105 0.00096852 975050000 1718110 2318100 1680900 1648730 2403900 2169500 2639700 3062200 1951030 2471300 TRUE FALSE FALSE 2100297.642 2589181.63 2302734.858 1738795.945 2164559.275 2283091.665 2075706.531 2311190.649 2342583.825 1855250.391 1.132083115 1.395596865 1.241198961 0.937229796 1.16672083 1.230611068 1.118828241 1.245756724 1.262677985 1 20.82318248 -11.36384345 1.969775089 3.60E-05 1.192001579 0.206686555 0.113021797 2674354.55 280385.3186 11899531.36 0.029757159 4.33E-12 11.36384345 1.191965531 IKPNLSSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 IKPNLSSSPR 10 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 0 IKPNLS(0.025)S(0.242)S(0.733)PR 95.417 0.001171 451150000 1329500 1247500 921330 469400 1301900 1155800 1332100 1272700 1111900 1502800 TRUE FALSE FALSE 1236308.916 1148643.557 1278093.65 1092786.922 1138603.562 1013209.147 998794.4905 982933.9928 1208280.387 1126489.098 1.097488575 1.01966682 1.134581464 0.970082111 1.010754178 0.899439816 0.886643725 0.872564141 1.072607262 1 20.10340192 -5.594991593 1.806562689 0.93899703 1.076688194 0.405433397 0.066041934 0.327100151 2.17383476 0.021960805 0.03325546 2.54E-06 5.594991593 0.137691164 IKPS(ph)IR ddPTM_HeLa_A485_30min_R1 1 IKPSIR 6 1 H7C201 H7C201 GLS 1 0 IKPS(1)IR 75.38 0.012031 603640000 540870 605800 504040 612510 704120 657430 834150 925690 546170 815390 TRUE FALSE FALSE 661184.6655 676643.0402 690505.3709 645969.8703 634015.3405 691852.0182 655927.0381 698663.0761 655781.3092 612128.2791 1.080140696 1.105394185 1.128040305 1.05528513 1.035755678 1.130240248 1.071551602 1.141367096 1.071313533 1 19.22347449 -11.78082929 1.327588467 5.01E-05 1.09190999 0.406484556 0.032975923 200923.3952 7147.906336 601340.1444 0.008872842 1.66E-12 11.78082929 1.091859921 IKPS(ph)IR ddPTM_HeLa_A486_30min_R1 2 IKPSIR 6 1 H7C201 H7C201 GLS 1 0 IKPS(1)IR;IKPS(1)IR ; 75.38 0.012031 1428810000 1796990 1860580 1201690 728460 1864010 1819290 2119600 2048600 1511540 2233500 TRUE FALSE FALSE 1671030.281 1713140.865 1667016.55 1695891.694 1630208.485 1594844.497 1589253.661 1582178.501 1642561.504 1674217.062 0.998096554 1.023248958 0.995699177 1.01294613 0.973713935 0.952591234 0.94925186 0.945025909 0.981092321 1 20.67505515 -5.874672737 4.045589906 0.961282808 1.007798497 0.572086181 0.017045853 0.142927111 4.282491033 0.005226587 0.006034104 1.33E-06 5.874672737 0.04651569 IKPVTENLVLSSHTGFCQS(ph)S(ph)GDEALSK ddPTM_HeLa_A485_30min_R1 1 IKPVTENLVLSSHTGFCQSSGDEALSK 27 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 2 0 IKPVTENLVLSSHTGFCQS(1)S(1)GDEALSK 112.34 0.00084978 976640000 317110 304200 257440 276710 447750 311400 485050 446380 327190 514380 TRUE FALSE FALSE 387650.0255 339773.5438 352677.769 291825.9666 403170.4379 327704.4225 381415.105 336904.6051 392854.0318 386154.5325 1.003872784 0.879890083 0.91330734 0.755723272 1.044065015 0.848635442 0.987726604 0.872460574 1.01734927 1 18.55881878 -7.772709228 24.96981467 1.00867472 0.91154637 0.188178295 0.079253288 378.9924748 839679.191 0.069270414 0.018549616 1.69E-08 7.772709228 -0.09712835 IKPVTENLVLSSHTGFCQS(ph)S(ph)GDEALSK ddPTM_HeLa_A486_30min_R1 2 IKPVTENLVLSSHTGFCQSSGDEALSK 27 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 2 0 IKPVTENLVLS(0.037)S(0.113)HT(0.113)GFCQS(0.863)S(0.874)GDEALS(0.001)K;IKPVTENLVLSSHTGFCQS(1)S(1)GDEALSK ; 138.28 4.59E-06 2006500000 1150200 1151190 616910 132280 978000 1051750 1304810 1155920 955140 937310 TRUE FALSE FALSE 1069576.92 1059965.512 855794.0734 307954.5251 855330.1205 921995.7784 978332.7371 892742.2496 1037932.304 702601.4751 1.522309528 1.508629784 1.218036261 0.438306118 1.217375925 1.312259953 1.392443329 1.270623933 1.477270317 1 19.42234708 -6.169496189 5.531185991 1.31323721 1.157469341 0.028021636 0.302055853 0.857192618 40.71050938 0.109467294 0.109430641 6.77E-07 6.169496189 -0.155767869 IKPVTENLVLSSHTGFCQS(ph)SGDEALSK ddPTM_HeLa_A486_30min_R1 1 IKPVTENLVLSSHTGFCQSSGDEALSK 27 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 1 0 IKPVTENLVLSSHT(0.001)GFCQS(0.642)S(0.357)GDEALSK 118.76 7.97E-05 1005900000 725980 718500 422920 84474 620750 686510 848600 692040 653100 577170 TRUE FALSE FALSE 675092.551 661563.4433 586685.9502 196659.7411 542889.7467 601815.3761 636271.3044 534477.5991 709711.2339 432642.8753 1.560392161 1.529121317 1.356051339 0.454554443 1.254821881 1.391021118 1.470661695 1.235378252 1.640408925 1 18.72281712 -6.180760606 6.118928178 1.369485851 1.209681905 0.027682991 0.325036786 0.901992378 55.00637478 0.114923337 0.114820487 6.60E-07 6.180760606 -0.159803946 IKPVTENLVLSSHTGFCQSS(ph)GDEALSK ddPTM_HeLa_A485_30min_R1 2 IKPVTENLVLSSHTGFCQSSGDEALSK 27 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 1 0 IKPVTENLVLSSHTGFCQS(0.156)S(0.844)GDEALSK;IKPVTENLVLSSHTGFCQS(0.211)S(0.789)GDEALSK ; 217.1 2.60E-38 1698430000 877030 839520 664450 650170 1060180 796480 1150150 1067070 909490 1326550 TRUE FALSE FALSE 1072122.298 937694.5611 910257.7051 685687.1408 954624.7567 838182.4612 904411.0566 805369.4094 1092016.301 995865.4983 1.076573392 0.941587556 0.914036792 0.688533885 0.958588041 0.841662315 0.90816587 0.808713035 1.096549988 1 19.92559138 -7.768483734 24.99998949 1.048275038 0.888871902 0.285386486 0.09865453 227.1434082 806083.1867 0.088405496 0.024776662 1.70E-08 7.768483734 -0.159403136 IKPVTENLVLSSHTGFCQSS(ph)GDEALSK ddPTM_HeLa_A486_30min_R1 1 IKPVTENLVLSSHTGFCQSSGDEALSK 27 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 1 0 IKPVTENLVLSSHTGFCQS(0.006)S(0.994)GDEALSK 204.58 1.24E-28 1013600000 841880 859710 468980 92296 691720 812350 896210 781890 764660 545040 TRUE FALSE FALSE 782868.5595 791583.4486 650581.6157 214869.7524 604958.0276 712130.5164 671968.7789 603870.7155 830941.3445 408558.4364 1.916172791 1.937503618 1.592383262 0.525921712 1.480713586 1.743032215 1.64473113 1.478052248 2.033837196 1 18.64018292 -4.857213324 4.877180666 1.434293555 1.924637086 0.208581161 0.390359046 0.332319837 13.05277024 0.107894949 0.238915097 1.39E-05 4.857213324 0.490343531 IKQSS(ph)QDNELK ddPTM_HeLa_A485_30min_R1 3 IKQSSQDNELK 11 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IKQS(0.027)S(0.973)QDNELK;IKQS(0.051)S(0.949)QDNELK;IKQS(0.016)S(0.984)QDNELK ;; 156.17 1.45E-07 664660000 690260 492320 296055 1074230 715780 749820 1128730 1088280 514870 1418220 TRUE FALSE FALSE 843805.9556 549892.5414 405578.0644 1132912.465 644514.4299 789079.4158 887567.6146 821377.6236 618199.6863 1064683.854 0.792541328 0.516484343 0.380937555 1.064083446 0.605357569 0.741139647 0.833644289 0.771475608 0.580641553 1 20.02199367 -14 0.12020739 1.913199054 0.561853855 0.190533358 0.181345101 260.8635285 2.028656127 58.84658332 1.759297292 1.00E-14 14 -1.3513452 IKQSS(ph)QDNELK ddPTM_HeLa_A486_30min_R1 3 IKQSSQDNELK 11 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IKQS(0.202)S(0.798)QDNELK;IKQS(0.059)S(0.941)QDNELK;IKQS(0.082)S(0.918)QDNELK ;; 164.41 2.90E-08 722700000 937260 781170 313854 496680 727380 1010910 1322430 1207690 611950 1719910 TRUE FALSE FALSE 871562.914 719267.2442 435386.6741 1156296.141 636145.2179 886194.2024 991544.0268 932725.3507 664994.3187 1289233.341 0.676031938 0.557903074 0.337709754 0.896886625 0.493429077 0.687380767 0.769095861 0.723472874 0.51580602 1 20.29808197 -14 0.183838666 2.510577692 0.559210269 0.347118773 0.151413558 151.5658813 1.468411018 83.92652907 0.441727973 1.00E-14 14 -1.951367424 IKQT(ph)LPSSPT(ph)T(ph)TK ddPTM_HeLa_A485_30min_R1 1 IKQTLPSSPTTTK 13 1 F8VW64;F8VWX1;F8W659;J3KQU3;P51513-2;P51513 F8VW64 NOVA1 RNA-binding protein Nova-1 3 0 IKQT(0.346)LPS(0.346)S(0.346)PT(0.978)T(0.978)T(0.005)K 53.967 0.016696 526360000 321320 135270 130500 2132800 189140 330420 425910 369760 201730 1671600 TRUE FALSE FALSE 392796.5255 151088.6498 178777.3806 2249309.463 170308.5575 347720.2803 334910.8491 279075.7802 242215.3606 1254900.884 0.31301 0.120398871 0.142463347 1.792420017 0.135714748 0.277089836 0.266882312 0.222388703 0.193015531 1 20.25914199 -10.33921135 5.462266666 1.00014931 0.392573763 0.130466646 0.476070603 0.000887863 0.000107408 0.472789272 0.114640473 4.58E-11 10.33921135 -0.607575547 IKREDY(ph)ES(ph)LPK ddPTM_HeLa_A486_30min_R1 1 IKREDYESLPK 11 2 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3;A0A2R8YCS7;A0A2R8YF18;A0A2R8YFV6 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 2 0 IKREDY(1)ES(1)LPK 85.536 0.0034733 562750000 580580 610050 216540 351990 451970 750440 1016800 826460 469540 1292500 TRUE FALSE FALSE 539884.3401 561707.4162 300390.0871 819450.5086 395279.7081 657858.3427 762385.8854 638293.0995 510240.1053 968849.5872 0.55724268 0.57976741 0.310048217 0.845797448 0.407988725 0.679009778 0.786898086 0.658815473 0.526645324 1 19.88591318 -14 0.148971072 2.41297519 0.472489476 0.406838129 0.150371136 134.1927381 1.189787099 56.23257367 0.76048431 1.00E-14 14 -1.940485714 IKRHT(ph)PLSK ddPTM_HeLa_A485_30min_R1 2 IKRHTPLSK 9 2 A8MUA9;A8MU27;P61956-2;P61956;P55854;P55854-2 A8MUA9 SUMO3;SUMO2 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3 1 0 IKRHT(0.999)PLS(0.001)K;IKRHT(1)PLSK ; 86.911 0.0039872 2165830000 2559460 3154600 1218100 1877380 1892970 3338400 3920200 6221100 2074640 2484610 TRUE FALSE FALSE 3128803.047 3523503.029 1668725.879 1979936.516 1704499.26 3513193.462 3082617.245 4695365.471 2491001.218 1865242.453 1.677424317 1.889032186 0.89464288 1.061490163 0.913821824 1.883504987 1.652663031 2.517294984 1.335483875 1 20.83093174 -6.282432676 24.79745537 1.771049947 1.28635549 0.131702851 0.471881105 1264.840903 1494035.51 0.168691723 0.148927017 5.22E-07 6.282432676 -0.484694457 IKRHT(ph)PLSK ddPTM_HeLa_A486_30min_R1 1 IKRHTPLSK 9 2 A8MUA9;A8MU27;P61956-2;P61956;P55854;P55854-2 A8MUA9 SUMO3;SUMO2 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3 1 0 IKRHT(0.999)PLS(0.001)K 68.355 0.015713 657290000 1838000 968280 709880 521020 922420 1572200 1539000 1189200 1052700 2087500 TRUE FALSE FALSE 1709165.691 891549.9664 984764.5472 1212960.891 806721.4824 1378237.949 1153925.922 918445.1201 1143948.884 1564776.413 1.092274703 0.56976189 0.629332433 0.775165628 0.515550641 0.880789062 0.737438213 0.586949747 0.731062198 1 20.5775251 -8.052515242 21.93952616 1.000000002 0.712119916 0.206642062 0.160937673 5603.022219 2340797.211 0.147669867 0.038128109 8.86E-09 8.052515242 -0.287880086 IKS(ph)VPK ddPTM_HeLa_A485_30min_R1 2 IKSVPK 6 1 Q9Y2C9 Q9Y2C9 TLR6 Toll-like receptor 6 1 0 IKS(1)VPK;IKS(1)VPK ; 60.436 0.020232 1090320000 851030 481910 367260 2186400 886880 655350 1170830 827850 703760 2976500 TRUE FALSE FALSE 1040338.687 538265.1824 503124.757 2305837.496 798579.1132 689663.1126 920672.6057 624818.4895 844998.1767 2234513.328 0.465577302 0.240886987 0.225160777 1.03191933 0.357383911 0.308641306 0.41202377 0.279621733 0.378157591 1 21.09152922 -10.22999774 3.547558505 1.001087886 0.410404586 0.39225117 0.219929464 144505906.6 225974498.2 1729183.021 0.057506175 5.89E-11 10.22999774 -0.590683301 IKS(ph)VPK ddPTM_HeLa_A486_30min_R1 2 IKSVPK 6 1 Q9Y2C9 Q9Y2C9 TLR6 Toll-like receptor 6 1 0 IKS(1)VPK;IKS(1)VPK ; 59.245 0.021165 1473420000 1354390 1350610 545000 936300 956200 1853310 2155360 1961510 1313880 2570580 TRUE FALSE FALSE 1259454.255 1243582.745 756038.5956 2179753.718 836264.4798 1624667.455 1616066.131 1514916.992 1427768.176 1926890.036 0.653620202 0.645383349 0.392362087 1.131228911 0.433996992 0.843155253 0.838691415 0.786197948 0.740970242 1 20.87784281 -6.596841158 0.062466586 1.504240972 1.05E-18 0.217418848 0.19252772 71.46179982 2.362949472 24.51692903 31.05809985 2.53E-07 6.596841158 -1.504240972 IKSESTNHEQQS(ph)PQSGK ddPTM_HeLa_A485_30min_R1 2 IKSESTNHEQQSPQSGK 17 1 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 IKSESTNHEQQS(1)PQSGK;IKSESTNHEQQS(1)PQSGK ; 161.47 4.88E-12 349000000 509610 516510 342790 373380 760320 575330 838660 1019140 467450 692290 TRUE FALSE FALSE 622970.9864 576911.3515 469602.2857 393776.804 684619.8712 605453.3892 659473.4398 769194.3171 561262.9273 519714.8437 1.198678456 1.110053635 0.90357682 0.757678578 1.317299053 1.164972285 1.268913997 1.480031457 1.079944 1 18.98736074 -5.78858115 24.99998383 1.24237005 0.994542131 0.303662108 0.16532137 254.5423454 234454.8035 0.052351415 0.059375515 1.63E-06 5.78858115 -0.247827918 IKSESTNHEQQS(ph)PQSGK ddPTM_HeLa_A486_30min_R1 2 IKSESTNHEQQSPQSGK 17 1 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 IKSESTNHEQQS(1)PQSGK;IKSESTNHEQQS(1)PQSGK ; 189.11 4.25E-18 382600000 814630 696170 349060 54075 697080 651660 862330 782100 545620 614030 TRUE FALSE FALSE 757528.6438 641002.9538 484225.3802 125889.3328 609645.7264 571264.8148 646565.9132 604032.9031 592914.7809 460272.8913 1.645825027 1.392658499 1.052039756 0.273510205 1.324531029 1.241143734 1.404744719 1.312336474 1.288180973 1 18.81212995 -4.54078913 3.60738648 1.117535521 1.612855836 0.23782075 0.306835338 0.355411785 9.588037445 0.086781361 0.327572872 2.88E-05 4.54078913 0.495320316 IKSS(ph)PS(ph)PEVVKPK ddPTM_HeLa_A486_30min_R1 1 IKSSPSPEVVKPK 13 2 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 2 0 IKS(0.473)S(0.528)PS(0.999)PEVVKPK 62.165 0.016198 298860000 426660 336660 113060 331900 293430 487240 676960 582280 248270 907820 TRUE FALSE FALSE 396753.3373 309981.8355 156839.8599 772679.9733 256625.2733 427129.2827 507577.4478 449707.5551 269790.2435 680495.9631 0.583035549 0.455523401 0.230478751 1.135465918 0.377115056 0.6276735 0.7458934 0.660852642 0.396461196 1 19.37622708 -11.64190083 2.080540517 9.999956761 0.584426502 0.222024494 0.236142605 10924010.3 283075.5738 467637306 0.058389227 2.28E-12 11.64190083 -9.415530259 IKSS(ph)PSPEVVKPK ddPTM_HeLa_A486_30min_R1 1 IKSSPSPEVVKPK 13 2 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 IKS(0.196)S(0.772)PS(0.032)PEVVKPK 108.34 0.00016133 264580000 460160 351010 133740 215230 291670 398050 542330 525750 258040 691870 TRUE FALSE FALSE 427905.1603 323194.6892 185527.7097 501066.3171 255086.0289 348942.6381 406633.2978 406048.202 280407.115 518621.2487 0.825082199 0.623180577 0.357732565 0.966150767 0.49185418 0.6728275 0.784066019 0.782937844 0.54067803 1 18.98432179 -14 0.326683574 4.239433987 0.658153087 0.24570168 0.169908275 491.1851092 4.296127068 1103.416493 0.14341897 1.00E-14 14 -3.5812809 IKT(ph)GSPGSEVVTLQQFLEESNK ddPTM_HeLa_A485_30min_R1 2 IKTGSPGSEVVTLQQFLEESNK 22 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 IKT(0.443)GS(0.443)PGS(0.114)EVVTLQQFLEESNK;IKT(0.333)GS(0.333)PGS(0.333)EVVT(0.001)LQQFLEESNK ; 192.18 7.08E-20 84700000 150694 97368 79074 220565 156149 120075 176925 137874 105255 252755 TRUE FALSE FALSE 184215.3604 108754.3406 108326.7631 232613.9074 140602.2573 126361.9413 139123.5284 104060.1853 126378.713 189747.8301 0.970843041 0.573151959 0.570898561 1.225910764 0.740995337 0.6659467 0.73320221 0.548413045 0.66603509 1 17.53372386 -5.990005909 24.99000473 0.696074844 0.820835524 0.054476799 0.206825259 626.5391049 1566636.078 0.065229638 0.073883108 1.02E-06 5.990005909 0.12476068 IKT(ph)GSPGSEVVTLQQFLEESNK ddPTM_HeLa_A486_30min_R1 1 IKTGSPGSEVVTLQQFLEESNK 22 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 IKT(0.437)GS(0.437)PGS(0.124)EVVT(0.001)LQQFLEESNK 103.75 0.00031976 115900000 19667 16562 8776.6 9432.9 15088 19170 25177 23698 13996 25346 TRUE FALSE FALSE 18288.44486 15249.5668 12175.13457 21960.26791 13195.52235 16805.00031 18877.4483 18302.48272 15209.18455 18999.19663 0.962590431 0.802642717 0.640823652 1.155852447 0.694530543 0.8845111 0.993591923 0.963329297 0.800517245 1 14.2136508 -6.528971181 24.256077 0.936696293 0.847383997 0.077974841 0.142462966 308.8051402 1229435.757 0.052994855 0.04117699 2.96E-07 6.528971181 -0.089312296 IKT(ph)GSPGSEVVTLQQFLEESNKLTSVQIK ddPTM_HeLa_A485_30min_R1 1 IKTGSPGSEVVTLQQFLEESNKLTSVQIK 29 2 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 IKT(0.496)GS(0.496)PGS(0.008)EVVTLQQFLEESNKLTSVQIK 177.03 5.48E-15 83240000 43881 31691 21707 64228 51391 57579 96850 98892 34307 74561 TRUE FALSE FALSE 53642.17706 35396.98677 29737.3226 67736.61301 46274.3316 60593.74741 76157.20631 74638.58194 41192.10022 55974.31489 0.958335572 0.632379098 0.53126729 1.21013742 0.826706529 1.082527719 1.360574157 1.333443421 0.735910753 1 15.77247734 -5.266072552 24.99913522 1.093797997 0.699832494 0.389653649 0.212195339 384.9194691 2076905.421 0.060891261 0.093826562 5.42E-06 5.266072552 -0.393965503 IKT(ph)LHCEGTEINSDDEQESKEVEETATAK ddPTM_HeLa_A486_30min_R1 1 IKTLHCEGTEINSDDEQESKEVEETATAK 29 2 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 IKT(0.714)LHCEGT(0.142)EINS(0.142)DDEQES(0.003)KEVEETATAK 82.554 0.0018122 780100000 279380 191330 91986 226340 290920 292010 544920 527060 164080 636260 TRUE FALSE FALSE 259796.9047 176168.314 127605.4427 526930.9586 254430.1009 255984.7751 408575.2524 407059.9436 178302.5865 476936.3546 0.54472028 0.369374891 0.26755235 1.104824477 0.533467618 0.536727328 0.856666195 0.853489024 0.373849854 1 18.86343723 -5.070130363 0.12182148 1.096224199 3.54E-26 0.210457298 0.243651114 47.2806458 1.296364133 2.841544001 9.794061577 8.51E-06 5.070130363 -1.096224199 IKTEPS(ph)SPLSDPSDIIR ddPTM_HeLa_A485_30min_R1 1 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 IKT(0.006)EPS(0.53)S(0.441)PLS(0.023)DPSDIIR 46.982 0.02759 294150000 108870 183320 137290 115100 212160 166680 209890 257060 146370 197700 TRUE FALSE FALSE 133087.7559 204757.6793 188079.2841 121387.6216 191036.6055 175407.1071 165045.2869 194015.6319 175745.1164 148417.0284 0.896714867 1.379610423 1.26723521 0.817882037 1.287160965 1.181852978 1.112037403 1.307232964 1.184130408 1 17.1792971 IKTEPSS(ph)PLSDPSDIIR ddPTM_HeLa_A485_30min_R1 1 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 IKTEPS(0.19)S(0.809)PLS(0.001)DPSDIIR 107.57 9.19E-05 304890000 324500 433080 312260 334060 466560 501970 658310 728920 424260 493880 TRUE FALSE FALSE 396683.9055 483724.9387 427777.9682 352308.8519 420107.6482 528252.373 517656.6906 550151.2271 509405.0905 370764.8052 1.069907122 1.304667897 1.153771777 0.950221939 1.133083945 1.42476407 1.396186163 1.483828075 1.373930544 1 18.50014478 -6.251304647 22.69760172 1.369758797 1.124645475 0.329144042 0.14839887 207.7732356 465325.1522 0.048293222 0.047652191 5.61E-07 6.251304647 -0.245113322 IKTLHCEGTEINS(ph)DDEQESK ddPTM_HeLa_A485_30min_R1 4 IKTLHCEGTEINSDDEQESK 20 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 IKTLHCEGT(0.001)EINS(0.999)DDEQESK;IKT(0.002)LHCEGT(0.002)EINS(0.996)DDEQESK;IKTLHCEGTEINS(1)DDEQESK;IKTLHCEGTEINS(1)DDEQESK ;;; 235.76 2.98E-46 2385540000 1706790 1533200 717800 1821420 1394800 1800900 2787310 2906510 1126020 2330520 TRUE FALSE FALSE 2086459.547 1712494.403 983344.0902 1920919.563 1255928.815 1895192.339 2191778.448 2193683.865 1352001.886 1749564.254 1.192559543 0.978811952 0.562050858 1.097941706 0.717852352 1.083236774 1.252756761 1.253845842 0.772764923 1 20.73856422 -6.480057894 22.86682738 1.101995879 0.904376957 0.122897281 0.210385148 323.2856716 172637.9589 0.073831502 0.065103706 3.31E-07 6.480057894 -0.197618922 IKTLHCEGTEINS(ph)DDEQESK ddPTM_HeLa_A486_30min_R1 6 IKTLHCEGTEINSDDEQESK 20 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 IKTLHCEGTEINS(1)DDEQESK;IKT(0.005)LHCEGT(0.016)EINS(0.978)DDEQESK;IKTLHCEGT(0.001)EINS(0.999)DDEQESK;IKTLHCEGTEINS(1)DDEQESK;IKTLHCEGT(0.001)EINS(0.999)DDEQESK;IKTLHCEGTEINS(1)DDEQESK ;;;;; 209.41 7.28E-27 2266410000 2154130 1700470 650010 919404 1251253 1800540 2647600 2322140 1074483 3739760 TRUE FALSE FALSE 2003136.611 1565718.564 901711.2799 2140418.976 1094309.181 1578407.681 1985142.477 1793439.414 1167620.052 2803299.754 0.714563831 0.558526987 0.321660671 0.763535534 0.390364669 0.56305348 0.708144919 0.63976013 0.416516304 1 21.41869459 -10.94043038 2.468617958 1.31080807 0.563924291 0.461447118 0.141301523 17782650.15 8388447.792 31774211.21 0.035240664 1.15E-11 10.94043038 -0.746883779 IKTLHCEGTEINS(ph)DDEQESKEVEETATAK ddPTM_HeLa_A485_30min_R1 1 IKTLHCEGTEINSDDEQESKEVEETATAK 29 2 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 IKT(0.021)LHCEGT(0.021)EINS(0.957)DDEQESKEVEETATAK 92.956 0.00053501 436550000 163160 119490 56011 216620 208240 217240 551710 624260 123370 299580 TRUE FALSE FALSE 199454.3791 133463.3161 76731.79971 228453.4021 187506.8944 228614.3505 433832.6514 471159.2562 148129.2274 224900.2194 0.886857201 0.593433463 0.341181525 1.01579893 0.833733711 1.016514573 1.92900057 2.094970194 0.65864421 1 17.77892554 -6.555908941 5.345487492 1.513438363 0.736600287 0.35992641 0.423732323 0.183102942 13.74348604 0.16380775 0.128216742 2.78E-07 6.555908941 -0.776838076 IKVEPVALAPS(ph)PVIPR ddPTM_HeLa_A485_30min_R1 1 IKVEPVALAPSPVIPR 16 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 IKVEPVALAPS(1)PVIPR 114.84 6.53E-05 214270000 294570 352980 285580 290980 417040 418020 455040 477190 277250 422870 TRUE FALSE FALSE 360096.0802 394257.9405 391227.926 306875.5006 375518.0333 439906.8808 357816.9867 360158.4043 332891.5319 317456.2913 1.134317038 1.241928263 1.232383596 0.966670086 1.182896807 1.385724249 1.127137803 1.134513362 1.048621624 1 18.27619844 -7.721658454 1.803299257 1.002724919 1.184958895 0.288372893 0.099482383 0.466503375 2.887253421 0.09750189 0.029129223 1.90E-08 7.721658454 0.182233976 IKVEPVALAPS(ph)PVIPR ddPTM_HeLa_A486_30min_R1 1 IKVEPVALAPSPVIPR 16 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 IKVEPVALAPS(1)PVIPR 108.4 0.00010719 215340000 510250 447720 326650 194870 501560 453450 532250 552000 377590 593280 TRUE FALSE FALSE 474484.1099 412241.0366 453137.628 453667.2082 438649.6679 397507.9493 399075.4204 426321.6501 410319.8052 444718.8264 1.066930568 0.926970059 1.018930617 1.020121437 0.986352819 0.893841065 0.897365699 0.958631892 0.922649955 1 18.76253395 -6.095570747 5.834679912 0.929897966 1.003232746 0.396155339 0.043098807 0.234876549 11.65509113 0.013840204 0.01392196 8.02E-07 6.095570747 0.073334779 IKWDEQTSNTKGDDDEES(ph)DEEAVK ddPTM_HeLa_A485_30min_R1 2 IKWDEQTSNTKGDDDEESDEEAVK 24 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 IKWDEQTSNTKGDDDEES(1)DEEAVK;IKWDEQTSNTKGDDDEES(1)DEEAVK ; 218.67 2.47E-38 826140000 373970 207480 99650 821290 316360 358410 660670 664180 229630 1271520 TRUE FALSE FALSE 457158.3363 231742.9812 136514.6818 866154.9931 284862.0876 377175.7934 519512.4573 501288.8136 275714.6347 954553.4646 0.478923762 0.242776324 0.143014181 0.907392855 0.298424445 0.39513323 0.544246579 0.525155303 0.288841479 1 19.86446648 -14 0.368922985 8.463128483 0.412687435 0.415905038 0.20302943 535.6865512 4.166445362 3185.702909 0.144750498 1.00E-14 14 -8.050441048 IKWDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_HeLa_A485_30min_R1 1 IKWDEQTSNTKGDDDEESDEEAVKK 25 3 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 IKWDEQTSNTKGDDDEES(1)DEEAVKK 150.04 1.87E-08 286200000 71329 29093 14118 175130 51611 43881 123960 132630 31963 262130 TRUE FALSE FALSE 87195.88997 32495.17327 19340.8357 184696.9084 46472.42762 46178.54131 97474.93334 100102.2845 38377.68092 196785.8151 0.443100484 0.165129653 0.098283688 0.938568201 0.236157406 0.234663973 0.495335161 0.508686485 0.195022598 1 17.58626671 -11.07922601 2.517988762 1.995639104 0.371225517 0.396595615 0.233721017 22272695.1 7590326.757 127195481 0.059266555 8.33E-12 11.07922601 -1.624413587 IKWDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_HeLa_A486_30min_R1 3 IKWDEQTSNTKGDDDEESDEEAVKK 25 3 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 IKWDEQTSNTKGDDDEES(1)DEEAVKK;IKWDEQTSNTKGDDDEES(1)DEEAVKK;IKWDEQTSNTKGDDDEES(1)DEEAVKK ;; 200.79 2.27E-28 7370040000 4470667 2591789 530661.3 5086658 1934098 5252245 9335310 7132960 2170925 13618950 TRUE FALSE FALSE 4157296.33 2386406.201 736147.567 11841996.89 1691505.394 4604276.413 6999516.699 5508940.719 2359102.527 10208676.28 0.407231674 0.23376255 0.072109992 1.159993379 0.165692921 0.451016007 0.685643908 0.539633207 0.231087994 1 23.28329247 -14 0.228600706 3.868136083 0.384763904 0.232641049 0.299684514 246.509537 2.468319225 328.2504974 0.527390582 1.00E-14 14 -3.483372179 IKWGDAGAEYVVESTGVFTTMEK ddPTM_HeLa_A485_30min_R1 4 IKWGDAGAEYVVESTGVFTTMEK 23 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 207.55 6.74E-29 461234000 924171.1 770408.2 485587.9 889959.4 873745 1133752.7 1631444.1 2044746 676374.8 1321257 FALSE FALSE TRUE 1129749.773 860500.7373 665227.0712 938575.6285 786751.8799 1193114.238 1282872.74 1543268.837 812117.0183 991891.9458 1.138984723 0.867534756 0.670664858 0.946247857 0.793183051 1.20286715 1.293359368 1.555884029 0.818755532 1 19.91982344 -6.272239388 22.77822798 1.216365199 0.87412741 0.310160355 0.21204573 232.3025503 489944.8668 0.072885834 0.065050614 5.34E-07 6.272239388 -0.342237788 IKWGDAGAEYVVESTGVFTTMEK ddPTM_HeLa_A486_30min_R1 1 IKWGDAGAEYVVESTGVFTTMEK 23 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 210.88 3.89E-29 222960000 326960 333040 200330 246280 379100 420980 506720 487440 327630 594600 FALSE FALSE TRUE 304041.7924 306648.6975 277903.141 573352.2863 331549.743 369043.7678 379933.2965 376460.5527 356029.2322 445708.2898 0.682154224 0.688003128 0.623509025 1.286384614 0.74387161 0.827993951 0.852425914 0.844634397 0.798794279 1 18.76574027 IKYSVGSLS(ph)PVSASVLKK ddPTM_HeLa_A485_30min_R1 1 IKYSVGSLSPVSASVLKK 18 2 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 IKYSVGS(0.002)LS(0.987)PVS(0.009)AS(0.003)VLKK 93.767 0.0002709 128730000 85737 107560 55419 68853 101930 136310 168210 221530 70620 88476 TRUE FALSE FALSE 104808.8999 120138.2064 75920.79428 72614.26504 91781.4913 143446.9808 132270.5594 167199.4202 84792.78623 66420.56148 1.577958655 1.808750238 1.143031504 1.093249792 1.381823478 2.159677329 1.991409835 2.517284052 1.276604478 1 16.0193423 -6.240626812 22.99845804 1.896476282 1.392192762 0.136631185 0.448462396 442.0400684 488465.4784 0.14553161 0.145310636 5.75E-07 6.240626812 -0.50428352 IKYSVGSLS(ph)PVSASVLKK ddPTM_HeLa_A486_30min_R1 1 IKYSVGSLSPVSASVLKK 18 2 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 IKYSVGS(0.01)LS(0.986)PVS(0.004)ASVLKK 78.976 0.0015496 106630000 105300 69123 40417 36625 71847 66606 86299 83849 42747 123350 TRUE FALSE FALSE 97919.01377 63645.44174 56067.5448 85264.85093 62835.27931 58388.82892 64706.07742 64758.41311 46452.34438 92462.35713 1.059014899 0.688338949 0.606382387 0.922157444 0.679576871 0.631487567 0.699809949 0.700375971 0.502391955 1 16.49657852 -4.25985962 24.4364604 0.704104789 1.05901506 0.355977983 0.138381526 105.5238685 1632083.131 0.032521274 0.19988067 5.50E-05 4.25985962 0.354910271 ILALCMGNHELYMR ddPTM_HeLa_A485_30min_R1 6 ILALCMGNHELYMR 14 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;P26038 A0A2R8Y7M3;P26038 RDX;MSN Radixin;Moesin 0 0 ;;;;; ;;;;; 286.65 2.13E-65 436884000 293797 362831 367821 312821 381063 350452 446243 439628 328961 524338 FALSE FALSE TRUE 359151.1291 405260.9292 503893.2942 329909.6191 343123.0297 368801.1248 350899.5376 331808.5437 394980.4553 393630.1863 0.912407487 1.029547386 1.280118527 0.83812073 0.871688813 0.936922872 0.891444685 0.842944864 1.003430298 1 18.58648134 -5.308276843 24.99988418 0.904027407 1.069577594 0.352816887 0.100042542 423.7138899 226159.8322 0.028067103 0.041630382 4.92E-06 5.308276843 0.165550187 ILALCMGNHELYMR ddPTM_HeLa_A486_30min_R1 5 ILALCMGNHELYMR 14 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;P26038 A0A2R8Y7M3;P26038 RDX;MSN Radixin;Moesin 0 0 ;;;; ;;;; 254.4 2.73E-40 387203000 320219 380051 370464 138678 477459 392423 434869 413904 399182 483471 FALSE FALSE TRUE 297773.3017 349934.3746 513917.5822 322849.3924 417571.6401 344009.8401 326060.1766 319667.0947 433783.4172 362406.7147 0.821655035 0.965584688 1.418068599 0.890848263 1.152218276 0.949236938 0.899707879 0.882067251 1.196951931 1 18.46725016 -6.306607574 24.77510744 0.972854178 1.056646049 0.030195078 0.172008518 1423.685405 780898.2584 0.061030328 0.053824045 4.94E-07 6.306607574 0.083791871 ILALLDALSTVHSQK ddPTM_HeLa_A485_30min_R1 1 ILALLDALSTVHSQK 15 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 0 153.7 2.97E-07 4238100 13032 13643 11696 12765 18263 12830 16585 16367 11160 21672 FALSE FALSE TRUE 15930.92344 15238.43017 16022.83711 13462.31963 16444.67159 13501.75896 13041.47926 12352.96759 13399.70963 16269.56924 0.979185325 0.936621612 0.984834747 0.827453968 1.010762568 0.829878085 0.80158725 0.759268264 0.82360568 1 13.98988843 -6.325034731 10.13184717 0.825086881 0.942491493 0.313161666 0.075213661 0.666002537 103.8293322 0.025220429 0.022239998 4.73E-07 6.325034731 0.117404612 ILALLDALSTVHSQK ddPTM_HeLa_A486_30min_R1 2 ILALLDALSTVHSQK 15 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 0 ; ; 212.87 1.73E-22 9487300 29883 31257 24330.2 7173.8 35459 29438 34817 32159 29896.2 29911.2 FALSE FALSE TRUE 27788.35602 28780.08148 33751.50503 16700.96894 31011.40158 25806.23886 26105.41834 24837.09773 32487.62669 22421.24083 1.239376368 1.283607883 1.50533618 0.744872644 1.383126019 1.150972823 1.164316397 1.107748582 1.448966493 1 14.4525785 ILAQATSDLVNAIK ddPTM_HeLa_A485_30min_R1 1 ILAQATSDLVNAIK 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 196.57 8.69E-15 5777800 4770.5 5493.5 3941.5 6445.9 5701.6 6723.4 6336.4 5644.6 4974.5 7762.7 FALSE FALSE TRUE 5831.681267 6135.917038 5399.624869 6798.023195 5133.928684 7075.426828 4982.576376 4260.253 5972.836521 5827.601752 1.000700033 1.052906032 0.926560376 1.166521579 0.880967661 1.214123258 0.854996032 0.731047381 1.024921876 1 12.50868657 -6.853399129 24.6485205 0.88032437 1.034293522 0.229998768 0.120237653 20.91930855 5598.442121 0.047007293 0.031692319 1.40E-07 6.853399129 0.153969151 ILAT(ph)PPQEDAPSVDIANIR ddPTM_HeLa_A485_30min_R1 2 ILATPPQEDAPSVDIANIR 19 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 1 0 ILAT(1)PPQEDAPSVDIANIR;ILAT(1)PPQEDAPSVDIANIR ; 140.81 1.16E-06 222110000 42587 42893 51257 40681 60966 48632 53581 55310 47514 61249 TRUE FALSE FALSE 52060.33123 47908.96323 70219.09728 42903.30002 54896.01098 51178.29632 42132.98163 41745.13578 57049.62398 45980.7515 1.132220103 1.041935194 1.52714114 0.933070875 1.193891121 1.113037405 0.916317812 0.907882851 1.240728394 1 15.48874243 -6.56256608 7.574620912 1.008753131 1.16479829 0.152835466 0.165715373 0.407974885 64.25612616 0.062221575 0.048311032 2.74E-07 6.56256608 0.156045159 ILAT(ph)PPQEDAPSVDIANIR ddPTM_HeLa_A486_30min_R1 4 ILATPPQEDAPSVDIANIR 19 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 1 0 ILAT(1)PPQEDAPSVDIANIR;ILAT(0.999)PPQEDAPS(0.001)VDIANIR;ILAT(1)PPQEDAPSVDIANIR;ILAT(0.924)PPQEDAPS(0.076)VDIANIR ;;; 194.77 3.16E-18 1143831000 572851 734990 678640 176247.7 738976 529813 589029 626072 574584 533127 TRUE FALSE FALSE 532697.1031 676746.7156 941427.5826 410313.5527 646286.7394 464450.0588 441647.7141 483529.0727 624389.4038 399628.5291 1.332980666 1.693439448 2.355756694 1.026737389 1.617218723 1.16220446 1.105145609 1.209946331 1.562424497 1 18.60830005 -5.288294435 24.99880723 1.256064421 1.783997246 0.412204402 0.302438054 726.4447661 676230.5996 0.08488165 0.12593869 5.15E-06 5.288294435 0.527932825 ILATPPQEDAPSVDIANIR ddPTM_HeLa_A485_30min_R1 2 ILATPPQEDAPSVDIANIR 19 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 ; ; 407.92 1.33E-187 101488000 64229 94679 101785 66720 105469 90058 107070 111606 88045 103145 FALSE FALSE TRUE 78516.51946 105750.8855 139439.5071 70364.74466 94968.13604 94773.29762 84193.61982 84234.45351 105714.8239 77432.84974 1.013994961 1.365710881 1.800779741 0.908719554 1.226457974 1.22394175 1.087311394 1.087838738 1.365245167 1 16.24065812 -5.292599162 24.9999166 1.138503935 1.390717219 0.244138742 0.213146762 974.3481761 781730.7314 0.060025964 0.089043111 5.10E-06 5.292599162 0.252213284 ILCLFRPQSGR ddPTM_HeLa_A485_30min_R1 2 ILCLFRPQSGR 11 1 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 0 0 ; ; 208.84 6.94E-15 45288000 41457 59206 56750 39462 59054 51922 67217 65442 43567 58989 FALSE FALSE TRUE 50678.96663 66129.62668 77744.18656 41617.70914 53174.37641 54640.55563 52855.53884 49392.24689 52310.49728 44284.12791 1.144404757 1.493303127 1.755576777 0.939788387 1.200754738 1.233863197 1.193554922 1.115348754 1.181247091 1 15.43450209 -5.271100601 24.99991906 1.139049709 1.467315721 0.477507881 0.162847029 589.9370262 1526553.148 0.046033473 0.069248376 5.36E-06 5.271100601 0.328266013 ILCLFRPQSGR ddPTM_HeLa_A486_30min_R1 2 ILCLFRPQSGR 11 1 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 0 0 ; ; 211.64 3.77E-16 87534000 61412 68272 60919 27125 79503 63220 75196 73507 58437 80812 FALSE FALSE TRUE 57107.33593 62861.87808 84508.46827 63148.37082 69530.9924 55420.55917 56381.16546 56771.06075 63502.36621 60576.1492 0.942736319 1.037733149 1.395078251 1.042462614 1.147827872 0.91489076 0.93074859 0.937185039 1.048306422 1 15.88646225 -6.257465232 24.69524496 0.960082877 1.120710484 0.286120807 0.115542075 379.0128095 2355181.985 0.040110122 0.03867975 5.53E-07 6.257465232 0.160627607 ILDATDQES(ph)LELKPTSR ddPTM_HeLa_A486_30min_R1 1 ILDATDQESLELKPTSR 17 1 C9J519;E7EN73;Q8IZA0-3;Q8IZA0-2;Q8IZA0 C9J519 KIAA0319L Dyslexia-associated protein KIAA0319-like protein 1 0 ILDATDQES(1)LELKPTSR 101.48 0.00017747 112280000 139490 136880 85148 58065 148360 147930 170050 157820 136330 256310 TRUE FALSE FALSE 129712.4713 126033.1303 118119.5859 135178.2544 129751.3054 129679.9006 127501.6914 121887.8312 148147.1942 192128.3077 0.675134616 0.65598418 0.614795328 0.703583225 0.675336742 0.674965091 0.663627827 0.634408498 0.771084677 1 17.55171057 -8.096486846 3.24059474 0.999827611 0.663162955 0.949910905 0.023607716 0.078527474 1.830511507 0.023383671 0.006211868 8.01E-09 8.096486846 -0.336664656 ILDIGLAYINHLVER ddPTM_HeLa_A485_30min_R1 1 ILDIGLAYINHLVER 15 0 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 0 0 113.59 0.00029043 2119300 3803.4 4322.9 4228.4 3215.6 4534.1 3448.1 3621.9 4285.9 4061.7 4973.4 FALSE FALSE TRUE 4649.453208 4828.425551 5792.661118 3391.260086 4082.669084 3628.637184 2848.051477 3234.776305 4876.845934 3733.622909 1.245292661 1.293227964 1.551485316 0.908302785 1.09348726 0.971881005 0.762811764 0.866390737 1.306196703 1 11.86636051 -5.273578216 24.95776141 0.975907552 1.356324583 0.552686758 0.154881812 532.4350667 1094698.956 0.044458965 0.066489641 5.33E-06 5.273578216 0.380417031 ILDIGLAYINHLVER ddPTM_HeLa_A486_30min_R1 2 ILDIGLAYINHLVER 15 0 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 0 0 ; ; 155.98 8.52E-08 2188770 4852.3 3652.3 4636.2 1101.32 5019.6 4074.5 4132.6 4099.74 3464.8 4315.1 FALSE FALSE TRUE 4512.178827 3362.878447 6431.460802 2563.928618 4389.994962 3571.829616 3098.57977 3166.318699 3765.131654 3234.570873 1.394985302 1.039667572 1.988350558 0.792664226 1.357210936 1.10426692 0.957956988 0.978899156 1.164028182 1 11.65935861 -5.297914051 24.99965136 1.060975591 1.430868793 0.360050188 0.256596993 666.1954896 456607.3532 0.069763156 0.103478792 5.04E-06 5.297914051 0.369893202 ILDLVISCFK ddPTM_HeLa_A486_30min_R1 1 ILDLVISCFK 10 0 A0A2R8Y5E8;D6RB22;A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590;A0A2R8Y4X6;D6RJE6;A0A2R8Y6I1 A0A2R8Y5E8 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 0 0 127.3 0.0041275 1110500 3412.7 4863.7 4181.7 2083.7 5392.8 5116.4 5100.1 4535 6133.3 5677.6 FALSE FALSE TRUE 3173.487353 4478.282699 5800.96623 4850.958904 4716.384738 4485.190588 3824.001037 3502.479498 6664.939382 4255.892005 0.745669145 1.052254778 1.363043569 1.139821898 1.108201226 1.053877914 0.898519284 0.822971893 1.566049931 1 12.05524583 -4.285846956 4.503828088 1.108520033 0.728397374 0.227794375 0.204036035 0.272771736 13.41462621 0.05112499 0.309794075 5.18E-05 4.285846956 -0.380122658 ILDLVISCFKR ddPTM_HeLa_A485_30min_R1 1 ILDLVISCFKR 11 1 A0A2R8Y5E8;D6RB22;A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590;A0A2R8Y4X6;D6RJE6;A0A2R8Y6I1 A0A2R8Y5E8 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 0 0 87.184 0.0026362 0 8636.3 10827 8389.7 7466.1 10387 12289 14081 15828 7132.9 10271 FALSE FALSE TRUE 10557.41514 12093.12347 11493.39915 7873.954138 9352.833809 12932.43304 11072.47932 11946.15818 8564.407603 7710.628724 1.369202891 1.568370609 1.490591697 1.021181854 1.212979401 1.677221599 1.436002136 1.549310518 1.110727531 1 12.91263279 -7.906567751 5.267301992 1.003849292 1.411752831 0.402285855 0.177691104 0.20451577 8.316575227 0.183776555 0.047902136 1.24E-08 7.906567751 0.40790354 ILDPEGLALGAVIAS(ph)SK ddPTM_HeLa_A485_30min_R1 1 ILDPEGLALGAVIASSK 17 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 ILDPEGLALGAVIAS(0.974)S(0.026)K 136.34 6.02E-06 25452000 30963 27861 21002 42003 39138 27733 42637 46926 20837 48865 TRUE FALSE FALSE 37850.61253 31119.10159 28771.51377 44297.51753 35241.2833 29185.057 33527.25664 35417.32492 25018.79477 36683.85479 1.031805756 0.848305113 0.784309989 1.207548056 0.960675575 0.795583157 0.913951296 0.965474461 0.682011062 1 15.16285763 -6.155034963 10.94317131 0.871941466 0.963431402 0.112325784 0.133575877 1.353368995 131.6718621 0.044682896 0.044693111 7.00E-07 6.155034963 0.091489935 ILDPEGLALGAVIAS(ph)SK ddPTM_HeLa_A486_30min_R1 2 ILDPEGLALGAVIASSK 17 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 ILDPEGLALGAVIAS(0.97)S(0.03)K;ILDPEGLALGAVIAS(0.883)S(0.117)K ; 199.41 5.33E-25 69000000 83571 95190 50601 50439 100862 103307 124319 104119 70171 127085 TRUE FALSE FALSE 77713.10446 87646.79772 70195.06234 117424.541 88210.94746 90562.03269 93213.07129 80413.3766 76253.47878 95262.08882 0.815782075 0.920059583 0.736862515 1.232647137 0.925981663 0.950661841 0.978490735 0.844127791 0.800459865 1 16.53961456 ILDPEGLALGAVIAS(ph)SKK ddPTM_HeLa_A485_30min_R1 1 ILDPEGLALGAVIASSKK 18 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 ILDPEGLALGAVIAS(0.76)S(0.24)KK 45.707 0.034044 102730000 50458 59410 46071 62277 77514 59019 78198 86652 57435 80795 TRUE FALSE FALSE 61682.20802 66357.4827 63114.58007 65679.03482 69796.43399 62109.14358 61490.35848 65400.46113 68961.67767 60654.29342 1.016947104 1.094027792 1.040562448 1.082842304 1.150725366 1.023985939 1.013784104 1.078249493 1.136962839 1 15.88832215 -10.09006387 4.109591766 0.999987755 1.070542341 0.178863941 0.045566979 31294164.07 0.580571841 3805.90924 0.011208954 8.13E-11 10.09006387 0.070554587 ILDPEGLALGAVIAS(ph)SKK ddPTM_HeLa_A486_30min_R1 2 ILDPEGLALGAVIASSKK 18 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 ILDPEGLALGAVIAS(0.982)S(0.018)KK;ILDPEGLALGAVIAS(0.968)S(0.032)KK ; 186.06 4.06E-18 242050000 407810 397660 219858 292020 448340 552620 739000 652770 334120 702560 TRUE FALSE FALSE 379224.6249 366147.9733 304992.9056 679837.3179 392105.0166 484443.363 554094.3837 504148.5209 363081.7906 526634.4031 0.720090869 0.695260263 0.579135932 1.290909431 0.744548807 0.919885522 1.052142398 0.957302671 0.68943804 1 19.00644224 -5.200920643 24.99999732 0.943192277 0.667871965 0.404428912 0.158728919 248.8248617 102787.6482 0.04171346 0.072249819 6.30E-06 5.200920643 -0.275320312 ILDPNTGEPAPVLSSPPPADVS(ph)TFLAFPSPEK ddPTM_HeLa_A485_30min_R1 1 ILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 32 0 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 1 0 ILDPNTGEPAPVLSS(0.001)PPPADVS(0.59)T(0.408)FLAFPSPEK 169.13 1.29E-14 340890000 162130 142770 119500 239110 213650 166020 253640 246250 145350 319400 TRUE FALSE FALSE 198195.2592 159465.7096 163708.0228 252171.9738 192378.2558 174712.5505 199447.742 185856.8014 174520.4118 239779.4581 0.826573138 0.665051589 0.682744152 1.051682975 0.802313331 0.728638524 0.831796616 0.775115612 0.72783721 1 17.87134854 -11.19146237 2.179691443 1.552629504 0.788605945 0.275019101 0.103270367 8487549.649 1704314.987 23127942.8 0.028574094 6.43E-12 11.19146237 -0.764023558 ILDPNTGEPAPVLSSPPPADVS(ph)TFLAFPSPEK ddPTM_HeLa_A486_30min_R1 3 ILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 32 0 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 1 0 ILDPNTGEPAPVLS(0.01)S(0.035)PPPADVS(0.461)T(0.461)FLAFPS(0.034)PEK;ILDPNTGEPAPVLSS(0.001)PPPADVS(0.456)T(0.456)FLAFPS(0.086)PEK;ILDPNTGEPAPVLS(0.022)S(0.019)PPPADVS(0.41)T(0.41)FLAFPS(0.139)PEK ;; 117.17 3.10E-05 419226000 228126 234387 145876.7 140749.4 240194 271521 372027 327276 203925 363850 TRUE FALSE FALSE 212135.5454 215813.3205 202364.065 327671.7163 210066.6288 238023.4996 278941.9097 252762.3992 221601.3832 272739.5917 0.777795201 0.791279767 0.741968057 1.201408692 0.770209515 0.872713412 1.022740805 0.926753603 0.812501705 1 18.05716462 ILDPNTGEPAPVLSSPPPADVSTFLAFPS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 ILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 32 0 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 1 0 ILDPNTGEPAPVLSS(0.001)PPPADVS(0.302)T(0.231)FLAFPS(0.466)PEK 129.09 1.95E-06 456610000 189310 168500 147870 304930 270290 220870 306710 340200 188770 408740 TRUE FALSE FALSE 231421.3564 188204.6092 202573.2664 321587.5538 243378.9786 232434.4117 241178.9029 256765.4166 226654.4075 306848.6403 0.754187329 0.613346727 0.660173257 1.048033172 0.793156451 0.757488811 0.785986546 0.836781992 0.738652149 1 18.22716767 -14 0.071205058 1.646795279 0.543900333 0.27630857 0.109328173 452.6043441 2.311177158 49.57959684 5.952737375 1.00E-14 14 -1.102894947 ILDSVGIEADDDRLNK ddPTM_HeLa_A485_30min_R1 1 ILDSVGIEADDDRLNK 16 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 192.78 9.40E-15 29214000 44235 39960 42196 68057 69587 48621 71962 64768 47343 87123 FALSE FALSE TRUE 54074.92314 44632.97439 57806.05632 71774.78158 62658.67395 51166.72038 56586.73082 48883.54645 56844.30584 65404.83948 0.826772508 0.682410885 0.883819252 1.097392519 0.958012808 0.782307866 0.865176511 0.747399532 0.869114676 1 15.99710977 ILDSVGIEADDDRLNK ddPTM_HeLa_A486_30min_R1 3 ILDSVGIEADDDRLNK 16 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ;; ;; 131.61 1.79E-05 326714000 239544 285953 190366 155389 329044 317836 350564 362762 228615 360874 FALSE FALSE TRUE 222753.2026 263293.0429 264080.8134 361753.4449 287772.2333 278624.6258 262849.1793 280169.0116 248431.5323 270508.8015 0.823460092 0.973325235 0.976237416 1.337307485 1.063818374 1.030002071 0.971684388 1.03571126 0.918386133 1 18.04531601 -9.889368947 13.6326845 0.999986485 1.022878929 0 0.125974307 0 0 0.128044621 0.031055382 1.29E-10 9.889368947 0.022892444 ILEDHGS(ph)PAGEIDDEDKDKDETETVK ddPTM_HeLa_A485_30min_R1 1 ILEDHGSPAGEIDDEDKDKDETETVK 26 2 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ILEDHGS(1)PAGEIDDEDKDKDETETVK 120.57 3.34E-05 630050000 402370 182840 120300 1440100 302610 255560 673150 555400 180340 1594300 TRUE FALSE FALSE 491875.8183 204221.5475 164803.9761 1518769.016 272481.0859 268940.7264 529326.0034 419187.2792 216532.5838 1196870.351 0.410968338 0.170629632 0.137695763 1.268950321 0.227661322 0.224703307 0.442258431 0.350236163 0.180915655 1 20.19083545 -10.23605924 4.406704427 1.000239653 0.384240933 0.260093419 0.313954187 185368934.2 215292401.4 397794.6245 0.07686609 5.81E-11 10.23605924 -0.61599872 ILEDHGS(ph)PAGEIDDEDKDKDETETVK ddPTM_HeLa_A486_30min_R1 2 ILEDHGSPAGEIDDEDKDKDETETVK 26 2 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ILEDHGS(1)PAGEIDDEDKDKDETETVK;ILEDHGS(1)PAGEIDDEDKDKDETETVK ; 302.86 8.40E-91 1360410000 654390 534138 113970 1103420 334045 996020 1591260 1276640 368284 2603430 TRUE FALSE FALSE 608520.6403 491810.9596 158102.2362 2568817.524 292145.9613 873141.1792 1193109.917 985976.9409 400207.1536 1951514.183 0.311819738 0.252015058 0.081015161 1.316320192 0.149702197 0.447417286 0.611376503 0.505236882 0.205075196 1 20.89616252 -11.21319358 2.307546585 2.734859909 0.441265237 0.205585948 0.334953118 45016691.43 8483926.988 407722485 0.083386878 6.12E-12 11.21319358 -2.293594672 ILEFFGLK ddPTM_HeLa_A485_30min_R1 2 ILEFFGLK 8 0 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ; ; 150.84 0.00049967 537050000 886530 866450 849690 1025580 1236940 998660 1324950 1234840 915290 1442830 FALSE FALSE TRUE 1083735.54 967773.7904 1164025.69 1081604.838 1113785.91 1050948.293 1041863.609 931993.5538 1098980.307 1083159.034 1.000532245 0.893473405 1.074658155 0.998565127 1.028275512 0.970262224 0.961875012 0.860440179 1.014606602 1 20.04681365 -6.600628195 3.281768649 0.947580276 0.997512988 0.084218786 0.057304973 0.515952306 11.18096645 0.023229442 0.017617732 2.51E-07 6.600628195 0.049932713 ILEFFGLK ddPTM_HeLa_A486_30min_R1 2 ILEFFGLK 8 0 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ; ; 154.31 0.00037683 679160000 1292170 1405760 985750 477490 1414640 1402590 1644570 1520420 1297780 1587570 FALSE FALSE TRUE 1201595.556 1294362.458 1367458.799 1111620.851 1237202.66 1229552.706 1233081.192 1174253.557 1410272.615 1190032.139 1.009716895 1.087670169 1.149094008 0.934109941 1.039638023 1.033209664 1.036174698 0.986741045 1.185071033 1 20.18256911 -10.3705073 7.624158142 1 1.048556293 0.044676095 0.070121289 8.93E-07 7.38E-08 0.066014784 0.016010683 4.26E-11 10.3705073 0.048556294 ILEFFGLK(ac)K ddPTM_HeLa_A486_30min_R1 1 ILEFFGLKK 9 1 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 1 ILEFFGLK(1)K 76.827 0.0033777 0 1719.5 1650.5 2097.4 986.39 2007.2 1531.8 2844.8 2354.2 1866 2933.2 FALSE TRUE FALSE 1598.97193 1519.708369 2909.56945 2296.365769 1755.43826 1342.82209 2133.000951 1818.200052 2027.746382 2198.707628 0.727232629 0.691182561 1.323308935 1.044416156 0.798395493 0.610732447 0.970115773 0.826940348 0.922244666 1 11.10244006 ILEFFGLKK ddPTM_HeLa_A485_30min_R1 2 ILEFFGLKK 9 1 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ; ; 129.38 0.00051147 0 268480 269550 197874 236740 333290 328420 446010 540730 221315 333680 FALSE FALSE TRUE 328202.4498 301071.5277 271075.8268 249672.5067 300106.4773 345615.5634 350716.3199 408115.1197 265730.8905 250499.7169 1.310190901 1.201883704 1.082140252 0.99669776 1.198031204 1.379704407 1.400066732 1.629203916 1.060803157 1 17.93444945 -6.123591319 4.845496283 1.338880866 1.141776966 0.099863234 0.184114923 0.378780754 13.36339544 0.060742815 0.061089354 7.52E-07 6.123591319 -0.1971039 ILEFFGLKK ddPTM_HeLa_A486_30min_R1 1 ILEFFGLKK 9 1 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 0 100.15 0.00085008 0 29759 26788 16497 13973 56620 23699 31153 30995 14889 32464 FALSE FALSE TRUE 27673.04778 24665.22132 22885.0802 32529.85016 49518.19164 20775.25833 23358.1899 23938.11512 16179.59051 24334.80309 1.137179852 1.013578011 0.940425945 1.336762415 2.034871268 0.853726174 0.959867635 0.983698739 0.664874519 1 14.57073348 ILEGPQQS(ph)LSGSPLQPIPAS(ph)PPPQIPPGLRPR ddPTM_HeLa_A486_30min_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 2 0 ILEGPQQS(0.443)LS(0.28)GS(0.28)PLQPIPAS(0.997)PPPQIPPGLRPR 59.525 0.00021392 0 35104 45140 37264 14407 46192 38354 39911 37498 36630 38542 TRUE FALSE FALSE 32643.39088 41562.942 51693.61876 33540.22409 40398.16864 33622.27343 29924.84566 28960.52398 39805.11789 28890.83233 1.129887519 1.438620443 1.789274126 1.160929658 1.398304077 1.163769636 1.035790361 1.002412241 1.377776778 1 14.81832415 -6.18132562 1.665128083 1.100836693 1.419408507 0.310926296 0.19717316 0.4519368 2.490402787 0.083033086 0.080225512 6.59E-07 6.18132562 0.318571814 ILEGPQQSLSGS(ph)PLQPIPAS(ph)PPPQIPPGLRPR ddPTM_HeLa_A486_30min_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 2 0 ILEGPQQS(0.314)LS(0.314)GS(0.373)PLQPIPAS(1)PPPQIPPGLRPR 83.058 0.00056688 226020000 78649 82455 70715 42235 100920 80708 95407 88376 71603 91505 TRUE FALSE FALSE 73136.11124 75920.9655 98097.74181 98325.21444 88261.67256 70751.06754 71535.15949 68254.71403 77809.60569 68591.5524 1.066255372 1.106855915 1.430172352 1.433488688 1.286771759 1.031483689 1.042915009 0.995089215 1.134390504 1 16.06574329 -6.261907054 24.9685086 1.040602459 1.274508296 0.482884417 0.115645048 40.86232133 2181542.935 0.044042356 0.041249409 5.47E-07 6.261907054 0.233905837 ILEGPQQSLSGS(ph)PLQPIPASPPPQIPPGLRPR ddPTM_HeLa_A485_30min_R1 2 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 ILEGPQQSLS(0.004)GS(0.996)PLQPIPASPPPQIPPGLRPR;ILEGPQQSLS(0.007)GS(0.993)PLQPIPASPPPQIPPGLRPR ; 304.69 1.73E-93 1187650000 59948 81303 84992 71429 146844 106714 131391 120861 96837 95817 TRUE FALSE FALSE 73283.22578 90810.67861 116434.0776 75330.9854 132223.6958 112301.38 103318.2395 91219.65025 116271.2977 71931.58528 1.01879064 1.262459019 1.618678042 1.047258796 1.838186872 1.561224872 1.436340365 1.268144583 1.616415059 1 16.13433778 -4.445093916 3.5954311 1.440429203 1.030318322 0.197551849 0.248406947 0.366228851 8.39340189 0.060354121 0.296595571 3.59E-05 4.445093916 -0.410110881 ILEGPQQSLSGS(ph)PLQPIPASPPPQIPPGLRPR ddPTM_HeLa_A486_30min_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 ILEGPQQSLS(0.044)GS(0.956)PLQPIPASPPPQIPPGLRPR 222.52 2.61E-39 769180000 22541 28575 18331 6943 27325 30264 33817 35542 25642 26466 TRUE FALSE FALSE 20960.9923 26310.61293 25429.25412 16163.65488 23897.6437 26530.33538 25355.62892 27449.86248 27864.66921 19838.74134 1.056568658 1.326223901 1.281797756 0.814752035 1.204594752 1.337299324 1.278086573 1.383649397 1.40455832 1 14.27603288 -6.004214732 24.96284511 1.300800626 1.129087249 0.166509583 0.166194948 309.2316722 1831521.974 0.052715221 0.058371893 9.90E-07 6.004214732 -0.171713377 ILEGPQQSLSGSPLQPIPAS(ph)PPPQIPPGLRPR ddPTM_HeLa_A485_30min_R1 2 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR;ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR ; 169.84 7.89E-15 546180000 8654 8477.9 5805.4 30117.6 16239.3 10279.1 23502.4 23485.8 10752 38206.9 TRUE FALSE FALSE 10579.05244 9469.316657 7953.059043 31762.84823 14622.45827 10817.29778 18480.92024 17725.87073 12909.82778 28682.62298 0.368831416 0.330141238 0.277277955 1.107389943 0.50980199 0.377137676 0.644324623 0.618000339 0.450092301 1 14.80788934 -14 0.139530642 2.521150321 0.365955988 0.296505519 0.225117238 196.0410086 1.676152112 84.13587083 1.473890964 1.00E-14 14 -2.155194333 ILEGPQQSLSGSPLQPIPAS(ph)PPPQIPPGLRPR ddPTM_HeLa_A486_30min_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR 157.42 1.60E-10 307250000 13555 10841 10836 8690.2 10506 20965 21893 14823 8976.1 14880 TRUE FALSE FALSE 12604.8645 9981.919678 15031.9894 20231.22478 9188.239515 18378.55146 16415.13984 11448.12648 9754.155575 11153.95115 1.130080662 0.894922306 1.347682915 1.813816872 0.823765444 1.647716689 1.471688339 1.026374092 0.874502268 1 13.44526724 -7.426566325 5.614458912 0.940824564 1.303527038 0.22383684 0.290645114 0.348831892 16.13517872 0.169935592 0.078574453 3.74E-08 7.426566325 0.362702474 ILELT(ph)PEPDRPR ddPTM_HeLa_A485_30min_R1 9 ILELTPEPDRPR 12 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR ;;;;;;;; 186.56 6.13E-13 12601040000 1819772 2476453 2469800 1943998 2990963 2222816 2499566 2824922 2120290 2324267 TRUE FALSE FALSE 2224574.003 2766052.636 3383481.797 2050193.688 2693172.222 2339199.209 1965513.305 2132105.45 2545812.755 1744870.012 1.27492248 1.585248538 1.939102497 1.174983623 1.543480147 1.340615171 1.126452567 1.221927958 1.459027169 1 20.73468813 -6.147571269 1.161164427 1.217224086 1.555069321 0.286607142 0.219308342 0.634969041 1.782540077 0.10839492 0.108516462 7.12E-07 6.147571269 0.337845235 ILELT(ph)PEPDRPR ddPTM_HeLa_A486_30min_R1 8 ILELTPEPDRPR 12 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR ;;;;;;; 213.67 6.83E-18 13393470000 3166856 3407570 3133932 1092564 4084830 2897705 3384670 3280320 2757072 3302160 TRUE FALSE FALSE 2944875.748 3137541.743 4347474.4 2543544.207 3572472.532 2540215.619 2537789.767 2533462.745 2996057.221 2475277.643 1.189715326 1.267551441 1.756358287 1.027579357 1.443261342 1.026234623 1.025254591 1.023506495 1.21039239 1 21.23915893 -6.270850692 24.66496878 1.05655782 1.339160353 0.365817922 0.184198579 630.4231697 1652194.435 0.063501106 0.05675916 5.36E-07 6.270850692 0.282602534 ILEPDDFLDDLDDEDYEEDT(ph)PKR ddPTM_HeLa_A485_30min_R1 2 ILEPDDFLDDLDDEDYEEDTPKR 23 1 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 ILEPDDFLDDLDDEDY(0.002)EEDT(0.998)PKR;ILEPDDFLDDLDDEDYEEDT(1)PKR ; 99.135 0.00083082 124569000 33524 31268 27557 53762 42287 32658 49581 44846 25980 66727 TRUE FALSE FALSE 40981.29814 34924.5206 37751.48104 56698.88193 38076.7578 34367.92238 38987.61431 33847.44818 31193.9477 50093.18692 0.818101236 0.69719103 0.753625061 1.131868132 0.760118494 0.686079774 0.778301735 0.675689655 0.62271837 1 15.61232678 -5.980053177 24.99949888 0.732697558 0.846572391 0.090485216 0.142901064 535.5809191 671244.3674 0.044814597 0.05080978 1.05E-06 5.980053177 0.113874833 ILEPDDFLDDLDDEDYEEDT(ph)PKR ddPTM_HeLa_A486_30min_R1 3 ILEPDDFLDDLDDEDYEEDTPKR 23 1 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 ILEPDDFLDDLDDEDYEEDT(1)PKR;ILEPDDFLDDLDDEDY(0.053)EEDT(0.947)PKR;ILEPDDFLDDLDDEDYEEDT(1)PKR ;; 209.58 3.37E-29 137967000 51876 52569 31457.6 37550 52189 63202 81016 68147 42201 95454 TRUE FALSE FALSE 48239.76029 48403.24099 43638.82518 87418.29767 45642.96898 55404.77983 60744.9399 52631.41574 45859.01666 71551.6971 0.674194495 0.676479286 0.609892245 1.221750164 0.637901976 0.774332155 0.848965746 0.735571871 0.640921439 1 16.12669837 -11.43108985 2.083328778 2.869723911 0.763674174 0.154092002 0.169751867 5513826.29 413676.928 48741650.18 0.042468586 3.71E-12 11.43108985 -2.106049737 ILEPDDFLDDLDDEDYEEDT(ph)PKRR ddPTM_HeLa_A485_30min_R1 2 ILEPDDFLDDLDDEDYEEDTPKRR 24 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 ILEPDDFLDDLDDEDYEEDT(1)PKRR;ILEPDDFLDDLDDEDYEEDT(1)PKRR ; 301.79 1.43E-89 348031000 166607 147280 142285 258130 336300 242419 393549 435941 180571 357653 TRUE FALSE FALSE 203668.1524 164503.1148 194922.1425 272230.9883 302816.7912 255111.684 309464.0412 329025.7862 216809.9434 268496.6892 0.758549958 0.612682098 0.725975963 1.013908175 1.127823185 0.950148342 1.152580473 1.225437033 0.80749578 1 18.03454477 -5.260837659 3.786955188 1.057078959 0.682147993 0.651682382 0.114207617 0.126209724 4.114559829 0.031621727 0.053381168 5.48E-06 5.260837659 -0.374930966 ILEPDDFLDDLDDEDYEEDT(ph)PKRR ddPTM_HeLa_A486_30min_R1 4 ILEPDDFLDDLDDEDYEEDTPKRR 24 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 ILEPDDFLDDLDDEDYEEDT(1)PKRR;ILEPDDFLDDLDDEDYEEDT(1)PKRR;ILEPDDFLDDLDDEDY(0.008)EEDT(0.992)PKRR;ILEPDDFLDDLDDEDYEEDT(1)PKRR ;;; 169.7 1.68E-13 231044000 126700 114103 95409 110351 196310 153400 250497 250718 96274 188702 TRUE FALSE FALSE 117818.9843 105061.0627 132353.9199 256902.7048 171686.9693 134475.0677 187820.0011 193634.9845 104619.1078 141449.791 0.832938554 0.74274456 0.935695409 1.816211273 1.213766158 0.950691173 1.327820988 1.368930864 0.739620095 1 17.10993052 -5.013378616 24.80062345 1.225547596 0.800686017 0.280178026 0.273309666 670.5672068 1243071.612 0.073427485 0.135043085 9.70E-06 5.013378616 -0.424861579 ILEPGLNILIPVLDR ddPTM_HeLa_A486_30min_R1 1 ILEPGLNILIPVLDR 15 0 Q9UJZ1;Q9UJZ1-2 Q9UJZ1 STOML2 "Stomatin-like protein 2, mitochondrial" 0 0 77.64 0.02259 0 1034.9 1326.5 819.72 358.67 1812.2 1765.9 1485.2 1124 1641.1 1752.6 FALSE FALSE TRUE 962.3588542 1221.383309 1137.137537 835.0018862 1584.896978 1548.041212 1113.587251 868.0897367 1783.351869 1313.737552 0.732535088 0.929701147 0.865574357 0.635592615 1.206403041 1.17834891 0.847648184 0.660778658 1.357464332 1 10.35946138 -5.759189955 24.99996488 1.021935245 0.806106107 0.277080196 0.196383427 98.29740916 1092458.657 0.060943278 0.074912406 1.74E-06 5.759189955 -0.215829138 ILEQQNSS(ph)RTLEK ddPTM_HeLa_A485_30min_R1 1 ILEQQNSSRTLEK 13 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;Q5JXL7 G3V1Q4 SEPT7;DKFZp586I031 Septin-7 1 0 ILEQQNS(0.004)S(0.498)RT(0.498)LEK 149.86 3.08E-08 1378600000 112840 132070 87083 108790 155860 136790 217730 224880 85898 145890 TRUE FALSE FALSE 137940.8687 147514.4376 119298.6255 114732.9222 140342.0311 143952.1129 171210.2068 169727.8274 103136.9407 109522.3079 1.259477374 1.346889419 1.089263254 1.047575827 1.281401331 1.314363399 1.56324506 1.549710106 0.941698022 1 16.74086523 -5.985518112 24.44943543 1.323098339 1.187171684 0.016477195 0.204638537 491.3635824 829551.3681 0.064395972 0.072987035 1.03E-06 5.985518112 -0.135926655 ILEQQNSS(ph)RTLEK ddPTM_HeLa_A486_30min_R1 1 ILEQQNSSRTLEK 13 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;Q5JXL7 G3V1Q4 SEPT7;DKFZp586I031 Septin-7 1 0 ILEQQNS(0.003)S(0.499)RT(0.499)LEK 106.93 0.00019062 425340000 166200 175250 140130 117330 246170 206840 290280 300770 130420 223490 TRUE FALSE FALSE 154550.2383 161362.5518 194392.0888 273150.1695 215293.0632 181322.1838 217648.8737 232291.2368 141724.9106 167526.6493 0.922541213 0.963205272 1.160365169 1.630487869 1.285127256 1.082348298 1.299189559 1.386592746 0.845984273 1 17.35403109 -4.814192424 4.210386253 1.245166615 0.937199746 0.209816825 0.205228686 0.274352197 9.919614645 0.054349031 0.129370181 1.53E-05 4.814192424 -0.30796687 ILEQQNSSRT(ph)LEK ddPTM_HeLa_A485_30min_R1 7 ILEQQNSSRTLEK 13 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;Q5JXL7 G3V1Q4 SEPT7;DKFZp586I031 Septin-7 1 0 ILEQQNSS(0.037)RT(0.963)LEK;ILEQQNSS(0.004)RT(0.996)LEK;ILEQQNSS(0.003)RT(0.997)LEK;ILEQQNS(0.143)S(0.049)RT(0.808)LEK;ILEQQNS(0.013)S(0.04)RT(0.946)LEK;ILEQQNS(0.001)S(0.022)RT(0.977)LEK;ILEQQNSS(0.001)RT(0.999)LEK ;;;;;; 196.65 9.33E-19 12407430000 3057480 3467600 2456530 3064010 4441660 4218760 5978770 6900040 2337630 4194120 TRUE FALSE FALSE 3737605.878 3873105.656 3365302.672 3231389.108 3999432.735 4439647.75 4701356.947 5207794.371 2806770.899 3148603.071 1.187067977 1.230102864 1.068824045 1.026292942 1.270224491 1.410037293 1.493156438 1.654001554 0.891433704 1 21.58628046 -5.95744987 6.676740003 1.343150889 1.131949642 0.088836629 0.217551378 0.353546824 40.54219046 0.067082716 0.07574551 1.10E-06 5.95744987 -0.211201247 ILEQQNSSRT(ph)LEK ddPTM_HeLa_A486_30min_R1 4 ILEQQNSSRTLEK 13 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;Q5JXL7 G3V1Q4 SEPT7;DKFZp586I031 Septin-7 1 0 ILEQQNSS(0.042)RT(0.957)LEK;ILEQQNSS(0.007)RT(0.993)LEK;ILEQQNSS(0.007)RT(0.993)LEK;ILEQQNSS(0.001)RT(0.998)LEK ;;; 224.15 2.05E-27 5962810000 1488880 1539480 1219610 974410 2245500 1753550 2574790 2496230 1165870 2136810 TRUE FALSE FALSE 1384517.201 1417485.998 1691875.654 2268475.724 1963848.452 1537214.83 1930550.309 1927892.921 1266928.55 1601738.868 0.864383845 0.884966974 1.056274333 1.416258149 1.226072796 0.959716256 1.205284049 1.203624985 0.790970723 1 20.61120753 -4.830766299 4.209945259 1.131899889 0.871429033 0.245745131 0.162751021 0.264834807 9.037144415 0.043875891 0.102679811 1.48E-05 4.830766299 -0.260470856 ILESITVSSLMAT(ph)PQDPK ddPTM_HeLa_A485_30min_R1 2 ILESITVSSLMATPQDPK 18 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 ILESITVSSLMAT(1)PQDPK;ILESITVSSLMAT(1)PQDPK ; 261.76 3.19E-57 196771000 146175 134120 105779 191593 188763 163058 209375 221451 129078 258437 TRUE FALSE FALSE 178691.1245 149804.1673 144911.0539 202059.2405 169969.0929 171595.4647 164640.3208 167139.795 154982.7706 194013.4121 0.921024596 0.772133048 0.746912558 1.041470475 0.876068778 0.884451559 0.84860278 0.861485777 0.798825035 1 17.56579686 -11.49109746 2.169538962 2.612925227 0.861295554 0.218818936 0.078665206 8425940.84 669977.8038 66748669.19 0.020000773 3.23E-12 11.49109746 -1.751629673 ILESITVSSLMAT(ph)PQDPK ddPTM_HeLa_A486_30min_R1 2 ILESITVSSLMATPQDPK 18 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 ILESITVSSLMAT(1)PQDPK;ILESITVSSLMAT(1)PQDPK ; 148.2 5.01E-08 102653000 129347 127580 83748 69089 131522 134328 171534 159797 108669 181060 TRUE FALSE FALSE 120280.4432 117470.0962 116177.4684 160842.6836 115025.2844 117755.9771 128614.3789 123414.7114 118088.5164 135721.3975 0.886230509 0.865523774 0.855999648 1.185094514 0.847510315 0.867630155 0.947635239 0.909323907 0.870080316 1 17.05028866 ILEVHIDK ddPTM_HeLa_A485_30min_R1 2 ILEVHIDK 8 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 ; ; 93.551 0.01016 69939000 184734 184256 173546 221396 264032 239102 281056 316679 195632 309650 FALSE FALSE TRUE 225827.441 205803.1364 237747.8873 233490.3029 237744.047 251621.011 221006.0896 239012.9787 234893.548 232459.9537 0.971468149 0.885327271 1.022747718 1.004432373 1.022731198 1.082427347 0.950727582 1.028189909 1.010468875 1 17.82662268 -4.776825207 24.99930857 1.016202993 0.928397712 0.480198069 0.036119147 163.7585213 266079.9669 0.009104431 0.019062279 1.67E-05 4.776825207 -0.087805282 ILEVHVDK ddPTM_HeLa_A485_30min_R1 1 ILEVHVDK 8 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 0 80.239 0.021635 16016000 48641 53212 47205 49890 65405 61022 78037 78764 47981 75331 FALSE FALSE TRUE 59461.02264 59434.68052 64668.09386 52615.36437 58893.04855 64217.01756 61363.75745 59447.0055 57610.34659 56552.36806 1.05143294 1.05096714 1.143508151 0.930383044 1.04138961 1.135531893 1.085078478 1.051185079 1.018707944 1 15.78729982 -7.813363064 2.871037824 1.001593183 1.062457648 0.129352749 0.055319592 0.550668687 8.591224701 0.053635404 0.014865396 1.54E-08 7.813363064 0.060864465 ILFFNT(ph)PK ddPTM_HeLa_A485_30min_R1 2 ILFFNTPK 8 0 K7EJR3;R4GMR5;P48556;K7EJC1 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 1 0 ILFFNT(1)PK;ILFFNT(1)PK ; 120.06 0.0037371 131824000 281240 230533 205066 394450 345030 268660 404090 371680 244366 506590 TRUE FALSE FALSE 343800.8677 257491.829 280928.4469 415997.8047 310677.6017 282726.6222 317752.8704 280524.8972 293408.0147 380306.4361 0.904010122 0.677064084 0.738689699 1.093848973 0.816913868 0.743417927 0.835517993 0.737628582 0.771504205 1 18.53680283 -11.37459813 2.27160957 2.335863553 0.811731396 0.202098188 0.11133055 4730824.543 655846.0653 32550522.48 0.029904294 4.22E-12 11.37459813 -1.524132156 ILFFNT(ph)PK ddPTM_HeLa_A486_30min_R1 2 ILFFNTPK 8 0 K7EJR3;R4GMR5;P48556;K7EJC1 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 1 0 ILFFNT(1)PK;ILFFNT(1)PK ; 127.51 0.0028314 136026000 574160 493960 289790 328500 486590 557360 716520 651630 387240 785440 TRUE FALSE FALSE 533914.349 454816.8106 402004.4488 764764.6015 425557.3449 488598.59 537239.1174 503268.074 420806.275 588760.7116 0.906844391 0.772498575 0.682797681 1.298939597 0.722801873 0.829876349 0.912491453 0.854792217 0.714732262 1 19.16732188 ILFIFIDSDHTDNQR ddPTM_HeLa_A485_30min_R1 4 ILFIFIDSDHTDNQR 15 0 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ;;; ;;; 373.19 3.70E-135 616653000 434118 675519 698981 337640 791444 522952 641468 743548 592731 575126 FALSE FALSE TRUE 530686.0514 754515.0708 957563.1589 356084.4183 712645.0564 550332.9581 504413.1215 561191.6872 711686.6748 431757.6726 1.229129405 1.747542936 2.21782546 0.824732114 1.650567209 1.274633881 1.168278304 1.299783936 1.648347487 1 18.71986229 -5.262864377 24.99970094 1.291345519 1.733103609 0.297065198 0.32615195 166.8458556 2927108.653 0.08897877 0.14046479 5.46E-06 5.262864377 0.441758089 ILFIFIDSDHTDNQR ddPTM_HeLa_A486_30min_R1 4 ILFIFIDSDHTDNQR 15 0 H7BZ94;P07237;I3L398;H0Y3Z3;I3L4M2 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ;;; ;;; 338.61 9.17E-99 628249000 584886 631581 677402 89898 888540 551094 623027 649189 565449 473087 FALSE FALSE TRUE 543888.5118 581532.2214 939710.1959 209287.0872 777091.0279 483105.6254 467139.0549 501382.8364 614462.5746 354622.9359 1.533709348 1.639860715 2.649885556 0.590167939 2.191316323 1.362307895 1.317283818 1.41384774 1.732720905 1 18.43592632 -11.15675345 0.111043539 2.59E-14 2.040467868 0.122648565 0.512521151 151.8574327 2.282673867 47.4821976 7.622581435 6.97E-12 11.15675345 2.040467868 ILGETS(ph)LMR ddPTM_HeLa_A485_30min_R1 1 ILGETSLMR 9 0 O96017-13;O96017-4;O96017-12;O96017;O96017-9;H0Y820 O96017-13 CHEK2 Serine/threonine-protein kinase Chk2 1 0 ILGET(0.061)S(0.939)LMR 66.92 0.01767 142070000 182510 164540 161510 205380 238010 181100 278210 250010 148230 269210 TRUE FALSE FALSE 223108.7198 183781.5217 221259.27 216599.3894 214312.8887 190582.116 218768.1607 188694.6555 177978.4014 202100.9014 1.103947178 0.909355279 1.094796057 1.071738858 1.060425199 0.943004779 1.08246999 0.933665581 0.880641304 1 17.62471623 -7.283065353 22.26046786 0.930364952 1.033712766 0.318145248 0.066502591 236.5861611 243522.9995 0.034940193 0.01682634 5.21E-08 7.283065353 0.103347814 ILGGSVLHLVLALR ddPTM_HeLa_A485_30min_R1 1 ILGGSVLHLVLALR 14 0 Q15843 Q15843 NEDD8 NEDD8 0 0 142.91 0.00056965 0 5494 5402.9 4875.5 3287.2 6210.8 4150.1 7289.4 6640.9 2103.6 6379 FALSE FALSE TRUE 6716.121346 6034.722156 6679.150336 3466.771412 5592.430945 4367.392819 5731.960141 5012.208862 2525.773225 4788.832697 1.402454788 1.260165585 1.394734533 0.723928279 1.167806708 0.911995281 1.196943077 1.046645222 0.527429832 1 12.22545832 -4.175941026 0.481967801 0.915140603 1.833232317 0.388005844 0.21019301 5.55645408 0.939495942 0.137894142 2.968178666 6.67E-05 4.175941026 0.918091714 ILGLAIES(ph)QDAGIK ddPTM_HeLa_A485_30min_R1 1 ILGLAIESQDAGIK 14 0 H3BM38;O00161;H3BNE1;H3BR18;H3BPJ0;O00161-2 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 0 ILGLAIES(1)QDAGIK 131.53 1.78E-05 31800000 19837 17993 13415 33006 28587 18187 46859 36975 18463 50895 TRUE FALSE FALSE 24249.67221 20097.12483 18377.76674 34809.0342 25740.7779 19139.2432 36847.19185 27906.82328 22168.35475 38207.81315 0.634678361 0.525995161 0.480994991 0.911044923 0.673704559 0.500924853 0.964388925 0.730395722 0.580204752 1 15.22158007 -14 0.08116129 2.015660477 0.365676994 0.313150674 0.153387551 313.7822382 1.795956094 57.6668784 5.196005774 1.00E-14 14 -1.649983483 ILGLLDAYLK ddPTM_HeLa_A485_30min_R1 2 ILGLLDAYLK 10 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 205.36 3.26E-14 130534000 275106 259223 244936 343550 422610 271782 383350 338600 271211 474330 FALSE FALSE TRUE 336302.3806 289536.8749 335548.019 362317.2666 380533.4645 286012.0853 301444.1408 255557.8191 325640.56 356088.2604 0.944435462 0.813104242 0.942316994 1.017492872 1.068649284 0.803205601 0.846543327 0.717681113 0.914493951 1 18.44187535 -6.293120161 24.99802651 0.838124767 0.951717298 0.216877459 0.092296933 967.7523992 763611.4681 0.033337331 0.029403253 5.09E-07 6.293120161 0.113592531 ILGLLDAYLK ddPTM_HeLa_A486_30min_R1 2 ILGLLDAYLK 10 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 200.16 5.89E-14 143087000 233465 254958 180869 96969 257980 259650 314790 287050 214637 271510 FALSE FALSE TRUE 217100.3091 234754.1995 250906.3206 225748.7325 225621.7428 227617.0229 236026.2125 221694.9813 233241.908 203522.1288 1.06671599 1.153457862 1.232820835 1.109209765 1.108585804 1.118389555 1.15970786 1.089291777 1.146027262 1 17.63482614 -13.98565518 0.285134958 3.57E-11 1.141183994 0.447360573 0.043670171 221.0169758 2.120901326 130.9858853 0.049661618 1.03E-14 13.98565518 1.141183993 ILGLLDAYLK(ac)TR ddPTM_HeLa_A485_30min_R1 1 ILGLLDAYLKTR 12 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 ILGLLDAYLK(1)TR 208.46 5.11E-14 8645400 9792 11309 13065 11602 15894 9323.3 13320 10727 11841 16230 FALSE TRUE FALSE 11970.19662 12631.48917 17898.28718 12235.78788 14311.53755 9811.453571 10474.07319 8096.186431 14217.38009 12184.15969 0.982439243 1.03671402 1.468980023 1.004237321 1.174601935 0.805263048 0.859646742 0.664484596 1.166874077 1 13.57271914 -6.256720427 24.88523789 0.875808543 1.139491619 0.299726339 0.177018675 434.9379906 2293633.511 0.058605929 0.056782935 5.54E-07 6.256720427 0.263683076 ILGLLDAYLK(ac)TR ddPTM_HeLa_A486_30min_R1 2 ILGLLDAYLKTR 12 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 ; ILGLLDAYLK(1)TR;ILGLLDAYLK(1)TR 171.62 1.85E-06 21861000 21039.2 22987.3 19163 7618.6 25628.1 23868.5 24698.3 24454 20650.4 22842.2 FALSE TRUE FALSE 19564.46073 21165.70263 26583.4268 17736.48582 22413.58473 20923.84715 18518.52411 18886.35803 22440.3933 17122.36444 1.142626113 1.236143682 1.552555834 1.035866622 1.309023926 1.22201856 1.081540121 1.10302278 1.310589631 1 14.06359432 -6.59372946 5.864637837 1.133242927 1.259226012 0.157759544 0.143316128 0.413690487 25.35401929 0.05472026 0.042202198 2.55E-07 6.59372946 0.125983084 ILGLLQTYFR ddPTM_HeLa_A485_30min_R1 2 ILGLLQTYFR 10 0 Q9NXX6-2;Q8N140;Q9NXX6 Q9NXX6-2 NSMCE4A;EID3 Non-structural maintenance of chromosomes element 4 homolog A;EP300-interacting inhibitor of differentiation 3 0 0 ; ; 234.47 1.77E-26 24045300 20474.9 24090 22644 21608 27187 20568.6 33719 30937 15270.4 28118 FALSE FALSE TRUE 25029.47087 26907.11594 31020.9579 22788.39033 24480.16682 21645.54009 26514.66019 23349.65224 18335.02921 21108.70007 1.185741935 1.274693176 1.469581632 1.079573363 1.159719298 1.025432169 1.256101044 1.10616249 0.868600584 1 14.36555012 -6.450381142 0.470766083 0.96989759 1.308630341 0.430963544 0.12018522 1.123210822 0.535086929 0.120781546 0.145735704 3.55E-07 6.450381142 0.338732751 ILGLLQTYFR ddPTM_HeLa_A486_30min_R1 2 ILGLLQTYFR 10 0 Q9NXX6-2;Q8N140;Q9NXX6 Q9NXX6-2 NSMCE4A;EID3 Non-structural maintenance of chromosomes element 4 homolog A;EP300-interacting inhibitor of differentiation 3 0 0 ; ; 233.57 1.88E-26 26345900 19219.5 24133 24045.7 9915.8 27423 24101.8 32287 27217 25848.2 28731 FALSE FALSE TRUE 17872.3123 22220.61319 33356.83901 23084.48352 23983.35163 21128.36497 24208.4511 21020.28324 28088.74279 21536.57059 0.829858785 1.031761909 1.548846362 1.071873696 1.113610523 0.981045932 1.124062487 0.976027411 1.304234705 1 14.39450092 -4.517078889 24.99750824 1.14021104 0.880334441 0.242714644 0.165535998 315.720169 1360747.1 0.042332229 0.120615404 3.04E-05 4.517078889 -0.259876598 ILGPQGNTIKR ddPTM_HeLa_A485_30min_R1 1 ILGPQGNTIKR 11 1 Q07666;Q07666-2 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 0 0 76.655 0.03029 4249600 8918 13956 12197 9223.9 15466 14304 14323 18667 14327 12964 FALSE FALSE TRUE 10901.77833 15588.0328 16709.17786 9727.778301 13926.15074 15052.93532 11262.77404 14088.88898 17202.29748 9732.313385 1.1201631 1.601678058 1.716876266 0.999534018 1.430918856 1.546696528 1.157255587 1.447640291 1.76754455 1 13.24856706 ILGQS(ph)SPEKK ddPTM_HeLa_A485_30min_R1 3 ILGQSSPEKK 10 1 P29374;P29374-3;P29374-2;H7C485 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 ILGQS(0.5)S(0.5)PEKK;ILGQS(0.647)S(0.353)PEKK;ILGQS(0.5)S(0.5)PEKK ;; 83.53 0.0031703 1170450000 1233530 889400 509441 2369530 1353730 1325280 2399780 2435590 842820 3447330 TRUE FALSE FALSE 1507924.493 993407.5932 697904.4255 2498971.424 1218947.888 1394669.612 1887047.399 1838257.734 1011966.243 2587974.074 0.582665996 0.383855311 0.269672109 0.965609141 0.471004675 0.538904012 0.729160086 0.710307631 0.391026422 1 21.30339173 -14 0.160021367 2.552543391 0.451703586 0.310161301 0.193455754 166.8580831 1.532606427 82.90033074 0.829672371 1.00E-14 14 -2.100839805 ILGQS(ph)SPEKK ddPTM_HeLa_A486_30min_R1 1 ILGQSSPEKK 10 1 P29374;P29374-3;P29374-2;H7C485 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 ILGQS(0.68)S(0.32)PEKK 153.39 1.61E-06 658520000 834910 780440 262060 663100 662640 1138500 1534200 1387000 631910 1952300 TRUE FALSE FALSE 776387.1205 718595.0921 363536.6502 1543730.311 579525.5123 998043.4454 1150326.933 1071210.378 686684.4676 1463431.373 0.530525131 0.491034363 0.24841387 1.054870314 0.396004571 0.681988554 0.786047747 0.731985386 0.469229019 1 20.48092366 -13.99999985 0.057828786 2.357805187 8.90E-06 0.257055235 0.212792199 604.116226 2.553727958 120.341813 21.33442236 1.00E-14 13.99999985 -2.357796286 ILGQSS(ph)PEKK ddPTM_HeLa_A485_30min_R1 1 ILGQSSPEKK 10 1 P29374;P29374-3;P29374-2;H7C485 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 ILGQS(0.339)S(0.661)PEKK 113.69 0.00033572 366040000 462200 301890 177060 928490 450830 456870 883090 760050 346550 1334500 TRUE FALSE FALSE 565014.7954 337193.4094 242561.8621 979211.0576 405943.7822 480791.0067 694410.6073 573646.5458 416099.4063 1001833.71 0.563980619 0.336576226 0.242117888 0.977418755 0.405200762 0.479910989 0.693139591 0.57259657 0.415337797 1 19.93421163 -14 0.255869664 3.960670345 0.483508798 0.344835611 0.19615194 222.9571476 2.202453652 346.7411746 0.273803837 1.00E-14 14 -3.477161547 ILGQSS(ph)PEKK ddPTM_HeLa_A486_30min_R1 3 ILGQSSPEKK 10 1 P29374;P29374-3;P29374-2;H7C485 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 ILGQS(0.025)S(0.975)PEKK;ILGQS(0.115)S(0.885)PEKK;ILGQS(0.406)S(0.594)PEKK ;; 176.25 4.40E-08 776800000 1580120 1407060 500278 1168470 1177740 1960840 2659470 2436260 1070400 3501760 TRUE FALSE FALSE 1469361.748 1295559.441 693999.0395 2720257.211 1030016.867 1718931.497 1994042.477 1881576.781 1163183.134 2624896.503 0.559778927 0.493565914 0.264391011 1.036329321 0.392402849 0.654856866 0.759665181 0.716819417 0.443134856 1 21.32382911 -14 0.136017497 2.298566518 0.450256742 0.259066189 0.206498923 197.1751045 1.660602379 70.35777465 1.357639966 1.00E-14 14 -1.848309776 ILGSAS(ph)PEEEQEKPILDRPTR ddPTM_HeLa_A485_30min_R1 4 ILGSASPEEEQEKPILDRPTR 21 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 ILGS(0.003)AS(0.997)PEEEQEKPILDRPTR;ILGSAS(0.998)PEEEQEKPILDRPT(0.001)R;ILGS(0.065)AS(0.641)PEEEQEKPILDRPT(0.294)R;ILGS(0.453)AS(0.496)PEEEQEKPILDRPT(0.051)R ;;; 199.89 8.95E-27 4462700000 1347100 1195220 977830 1796620 1673630 1352030 2041800 2099430 1167680 2223230 TRUE FALSE FALSE 1646757.748 1334990.582 1339570.008 1894764.801 1506997.521 1422820.2 1605552.75 1584541.501 1402022.665 1669019.677 0.986661674 0.799865095 0.802608877 1.135256119 0.902923759 0.852488572 0.96197353 0.949384554 0.840027643 1 20.67056953 ILGSAS(ph)PEEEQEKPILDRPTR ddPTM_HeLa_A486_30min_R1 4 ILGSASPEEEQEKPILDRPTR 21 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 ILGS(0.003)AS(0.997)PEEEQEKPILDRPTR;ILGS(0.032)AS(0.968)PEEEQEKPILDRPTR;ILGS(0.023)AS(0.917)PEEEQEKPILDRPT(0.06)R;ILGS(0.036)AS(0.918)PEEEQEKPILDRPT(0.046)R ;;; 219.07 7.61E-36 3483980000 773149 777954 461471 424755 825982 940425 1153058 1053706 613225 1072281 TRUE FALSE FALSE 718955.2476 716306.0918 640164.9298 988851.1059 722379.6356 824404.925 864550.6926 813800.146 666379.8367 803774.8582 0.894473422 0.891177529 0.796448064 1.230258817 0.898733804 1.025666474 1.075613007 1.012472756 0.829062803 1 19.61643193 ILGSASPEEEQEKPILDRPT(ph)R ddPTM_HeLa_A486_30min_R1 1 ILGSASPEEEQEKPILDRPTR 21 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 ILGSASPEEEQEKPILDRPT(1)R 190.78 8.21E-19 1417900000 753840 780220 432590 375830 831990 878170 1069700 976880 581180 1111400 TRUE FALSE FALSE 700999.7088 718392.5257 600100.4332 874951.2334 727634.0562 769830.314 802049.7459 754465.7491 631557.1503 833098.206 0.841437064 0.862314335 0.720323761 1.050237808 0.873407302 0.924057102 0.962731332 0.905614421 0.758082476 1 19.66812705 -5.24897923 24.99644173 0.920341733 0.813453995 0.302367709 0.081006515 1047.719317 2101837.352 0.021655243 0.037159486 5.64E-06 5.24897923 -0.106887737 ILHVDNHIGISIAGLTADAR ddPTM_HeLa_A486_30min_R1 1 ILHVDNHIGISIAGLTADAR 20 0 F5GX11;P25786;P25786-2;B4DEV8 F5GX11 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 0 141.86 1.72E-10 13223000 4953.3 6335.3 5919 2144.1 7986 6112.6 7025.7 6954.4 6373.4 7900.4 FALSE FALSE TRUE 4606.099249 5833.267755 8210.995316 4991.573157 6984.321414 5358.48956 5267.79555 5371.034933 6925.851444 5922.088417 0.777782925 0.985001801 1.386503331 0.842873798 1.179367973 0.904831063 0.889516532 0.906949467 1.169494772 1 12.53189031 ILHVFHGLLPGFLVK ddPTM_HeLa_A485_30min_R1 1 ILHVFHGLLPGFLVK 15 0 Q8NBP7;A0A669KAY4 Q8NBP7 PCSK9 Proprotein convertase subtilisin/kexin type 9 0 0 87.618 0.0030449 6691000 10145 12345 11969 12172 15138 9657.7 21541 17526 5744.1 17293 FALSE FALSE TRUE 12401.72025 13788.64036 16396.83117 12836.92554 13630.80757 10163.36224 16938.58938 13227.72102 6896.888182 12982.17335 0.955288449 1.062121109 1.263026669 0.988811749 1.049963453 0.78287063 1.304757602 1.018914219 0.531258364 1 13.66424431 -7.596451261 10.7413262 0.767122463 1.060364778 0.30538945 0.174340305 0.528936627 73.83527671 0.11280371 0.04253179 2.53E-08 7.596451261 0.293242315 ILHVFHGLLPGFLVK ddPTM_HeLa_A486_30min_R1 2 ILHVFHGLLPGFLVK 15 0 Q8NBP7;A0A669KAY4 Q8NBP7 PCSK9 Proprotein convertase subtilisin/kexin type 9 0 0 ; ; 74.326 0.011872 13943100 8784.7 11471.5 7770.1 5521.2 11517.8 8767.9 12879.1 13232.1 12044.6 14613 FALSE FALSE TRUE 8168.937894 10562.45656 10778.89081 12853.63263 10073.13012 7686.205643 9656.612959 10219.43968 13088.63563 10953.80969 0.745762263 0.964272419 0.984031229 1.173439469 0.919600615 0.701692458 0.881575747 0.932957572 1.194893466 1 13.4191451 -7.669494146 7.871042571 1.096115171 0.916989123 0.244341865 0.129819547 0.348619147 25.40621524 0.095221249 0.035456034 2.14E-08 7.669494146 -0.179126048 ILIAFISYK ddPTM_HeLa_A485_30min_R1 2 ILIAFISYK 9 0 H0YNA7;Q8TCT8 H0YNA7 SPPL2A Signal peptide peptidase-like 2A 0 0 ; ; 160.75 1.18E-05 16984400 49986 44820 32803 46504 43492 36885 58769 40076 24355 76351 FALSE FALSE TRUE 61105.21325 50061.30912 44938.19475 49044.39577 39161.78377 38816.24156 46212.52305 30247.29816 29242.8251 57318.10084 1.06607184 0.873394414 0.784014022 0.85565284 0.683235892 0.677207392 0.806246585 0.527709357 0.510184823 1 15.80670319 -3.138539593 0.523234447 0.675873734 2.113116492 0.383254621 0.136417703 12.10353338 1.033896671 0.072860992 13.74862263 0.000726876 3.138539593 1.437242758 ILIAFISYK ddPTM_HeLa_A486_30min_R1 1 ILIAFISYK 9 0 H0YNA7;Q8TCT8 H0YNA7 SPPL2A Signal peptide peptidase-like 2A 0 0 167.24 6.41E-06 6045900 18627 19163 12761 9393.9 17564 17967 21869 20163 15830 25532 FALSE FALSE TRUE 17321.34349 17644.45409 17702.40095 21869.47394 15360.95934 15750.41422 16397.14489 15572.32506 17202.15715 19138.62101 0.90504658 0.921929228 0.924956972 1.142688072 0.802615786 0.822964946 0.856756863 0.813659722 0.898819049 1 14.22419926 ILIAKPIMFR ddPTM_HeLa_A485_30min_R1 1 ILIAKPIMFR 10 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 0 127.4 0.0032684 0 36109 54509 46668 34627 56838 49834 56242 68909 42993 45903 FALSE FALSE TRUE 44141.32248 60883.35338 63932.43522 36518.58533 51179.00915 52443.23118 44225.43725 52008.9597 51621.30074 34460.22688 1.280935341 1.766771693 1.855252881 1.059731425 1.4851617 1.521848111 1.283376264 1.509246004 1.497996543 1 15.07264458 -12.27218326 0.224858795 1.50E-14 1.546166809 0.291656097 0.219825062 87.06234167 1.748646772 41.56766312 0.431327296 5.34E-13 12.27218326 1.546166809 ILIAKPIMFR ddPTM_HeLa_A486_30min_R1 2 ILIAKPIMFR 10 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 0 ; ; 142.92 0.00069445 0 94120 90749 82312 35660 110923 83466 104763 100867 77763 104922 FALSE FALSE TRUE 87522.67404 83557.71874 114185.4108 83018.28216 97010.00302 73168.81354 78550.18933 77901.78601 84503.55945 78648.84827 1.112828426 1.062415033 1.451838308 1.055556235 1.233457389 0.930322759 0.998745577 0.990501294 1.074441156 1 16.26313802 -6.257924795 24.99805853 0.99820495 1.184338656 0.412635691 0.11000706 312.8372584 2225109.081 0.036668402 0.035299561 5.52E-07 6.257924795 0.186133706 ILIFSSR ddPTM_HeLa_A486_30min_R1 1 ILIFSSR 7 0 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 0 110.61 0.019934 17279000 8035 9221.2 9043.6 5807.8 12948 13925 14234 14013 9919.5 12092 FALSE FALSE TRUE 7471.787993 8490.478529 12545.52412 13520.85191 11323.9411 12207.07508 10672.50265 10822.5458 10779.33025 9064.084494 0.824329032 0.936716613 1.3840917 1.491695264 1.249319897 1.346752128 1.177449598 1.19400319 1.189235411 1 13.14594559 -4.651708601 5.260772709 1.269125137 0.853621507 0.578119115 0.128236306 0.132728274 5.471953238 0.033731294 0.093499209 2.23E-05 4.651708601 -0.41550363 ILINT(ph)FNQKPYPGY(ph)AT(ph)KQK ddPTM_HeLa_A485_30min_R1 1 ILINTFNQKPYPGYATKQK 19 2 A6NLW8 A6NLW8 DUXA Double homeobox protein A 3 0 ILINT(1)FNQKPY(0.497)PGY(0.585)AT(0.919)KQK 45.546 0.019909 204510000 37161 151100 55968 12541 71655 279720 160130 728580 61830 25720 TRUE FALSE FALSE 45427.33625 168769.8306 76672.89222 13226.08307 64520.7766 294365.7067 125916.9174 549894.6126 74238.71386 19308.47734 2.352714585 8.740711534 3.970944517 0.684988404 3.341577664 15.24541275 6.521328178 28.47943952 3.84487666 1 14.23694678 -6.225677117 24.62481748 10 3.926079317 0.188179002 7.324583598 1032.577323 711001.6737 2.402141923 2.402057587 5.95E-07 6.225677117 -6.073920683 ILIPS(ph)DIESSK ddPTM_HeLa_A485_30min_R1 4 ILIPSDIESSK 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(1)DIESSK ;;; 173.19 2.25E-08 775920000 1677240 1815980 1502640 2261750 2149320 1943400 2531690 2487040 1665800 2866410 TRUE FALSE FALSE 2050336.252 2028343.064 2058529.066 2385303.675 1935326.154 2045153.419 1990773.749 1877089.54 2000110.78 2151866.739 0.952817484 0.942596968 0.956624789 1.10848113 0.89937082 0.950408955 0.925138027 0.872307521 0.929477065 1 21.03715731 ILIPS(ph)DIESSK ddPTM_HeLa_A486_30min_R1 4 ILIPSDIESSK 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(1)DIESSK;ILIPS(0.999)DIES(0.001)SK ;;; 212.68 2.20E-15 804890000 1634430 1749010 1004440 713642 1701780 1767140 2123680 2035740 1313360 2096710 TRUE FALSE FALSE 1519864.897 1610412.078 1393386.068 1661394.641 1488326.884 1549128.234 1592312.802 1572246.442 1427203.102 1571680.169 0.967031924 1.024643633 0.88655828 1.057081889 0.946965492 0.985651066 1.013127756 1.000360298 0.908074767 1 20.58387623 ILIPSDIESS(ph)KSSTRR ddPTM_HeLa_A486_30min_R1 1 ILIPSDIESSKSSTRR 16 2 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ILIPSDIES(0.058)S(0.299)KS(0.299)S(0.299)T(0.044)RR 168.09 2.08E-12 156070000 19305 17917 12405 9764.6 28990 20610 24156 29584 16620 32896 TRUE FALSE FALSE 17951.81919 16497.19167 17208.54822 22732.48228 25353.80388 18067.34775 18111.9133 22848.36901 18060.63498 24658.62748 0.728013723 0.669023111 0.697871292 0.921887574 1.028192015 0.73269884 0.734506141 0.926587217 0.732426612 1 14.58980488 -5.246071648 23.0921602 0.860453303 0.695374675 0.361522663 0.10300393 350.0584577 526007.8834 0.028686053 0.049384497 5.67E-06 5.246071648 -0.165078628 ILISLATGHR ddPTM_HeLa_A485_30min_R1 2 ILISLATGHR 10 0 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 193.82 2.10E-14 94356000 115540 139069 127716 107951 122869 112272 145341 120146 112004 168476 FALSE FALSE TRUE 141241.4744 155331.9098 174963.4631 113848.0898 110635.7309 118150.3883 114287.708 90680.00512 134482.1754 126478.0338 1.11672731 1.228133496 1.383350594 0.900141205 0.874742654 0.934157377 0.903617052 0.716962483 1.063284836 1 16.94852732 -5.27683089 25 0.900341496 1.241276763 0.677817492 0.103822008 414.6858837 673561.605 0.028510542 0.042454916 5.29E-06 5.27683089 0.340935267 ILISLATGHR ddPTM_HeLa_A486_30min_R1 2 ILISLATGHR 10 0 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 179.8 1.74E-09 118611000 138722 182664 143890 27693 144385 142125 154431 150834 151583 169987 FALSE FALSE TRUE 128998.3042 168189.0394 199608.0615 64470.70353 126274.887 124591.0625 115790.7304 116492.3909 164722.3365 127421.1488 1.012377501 1.319946029 1.566522225 0.505965486 0.991004148 0.977789509 0.908724584 0.914231209 1.292739377 1 16.95924522 -5.243794734 24.99996255 0.940129649 1.301648291 0.361211077 0.218231728 908.958892 1287864.401 0.058851661 0.101649494 5.70E-06 5.243794734 0.361518642 ILISLATGHREEGGENLDQAR ddPTM_HeLa_A485_30min_R1 2 ILISLATGHREEGGENLDQAR 21 1 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 240.21 5.26E-43 39639000 30687.1 44832.5 37963.2 15287.3 89578 22306 74773 52072 33334.6 65006 FALSE FALSE TRUE 37513.33953 50075.27088 52007.36746 16122.40649 80659.29979 23473.90767 58797.13771 39301.26035 40024.54846 48801.20055 0.768697063 1.026107356 1.065698525 0.330369055 1.652813842 0.481010865 1.204829739 0.805333883 0.820154996 1 15.57462902 -2.93736726 13.24130245 0.917533725 0.609461327 0 0.352598342 0 0 0.073472034 0 0.001155135 2.93736726 -0.308072398 ILISLATGHREEGGENLDQAR ddPTM_HeLa_A486_30min_R1 2 ILISLATGHREEGGENLDQAR 21 1 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 255.98 1.24E-52 38153000 22035 25749 30605 7285.3 37860 24245 29436 35050 23069 23289 FALSE FALSE TRUE 20490.46029 23708.55546 42456.07563 16960.54658 33111.24577 21253.89841 22070.80146 27069.88014 25068.63949 17457.28281 1.173748544 1.35808967 2.431997928 0.971545616 1.896701 1.217480328 1.264274727 1.550635367 1.435998933 1 14.0915414 -6.31167701 24.99975414 1.326254872 1.569883444 0.101749269 0.399292505 1020.232407 507695.2301 0.138139384 0.121827661 4.88E-07 6.31167701 0.243628572 ILIVTQT(ph)PHYMR ddPTM_HeLa_A485_30min_R1 6 ILIVTQTPHYMR 12 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 ILIVTQT(1)PHYMR;ILIVTQT(1)PHYMR;ILIVT(0.037)QT(0.962)PHYMR;ILIVTQT(1)PHYMR;ILIVTQT(1)PHYMR;ILIVTQT(1)PHYMR ;;;;; 221.78 6.46E-23 6318121000 1218826 1502973 1345568 986343 1827488 1285395 1788153 1907794 1114801 1181772 TRUE FALSE FALSE 1489949.639 1678732.618 1843349.597 1040224.421 1645536.878 1352696.295 1406099.504 1439904.53 1338531.335 887177.9893 1.679425839 1.892216262 2.077767505 1.172509274 1.854799035 1.524718051 1.584912521 1.623016517 1.50875174 1 19.75886405 -11.36496661 0.150707865 5.85E-14 1.935627347 0.487200171 0.219752075 44.69334117 0.860840996 16.70382925 1.291236843 4.32E-12 11.36496661 1.935627347 ILIVTQT(ph)PHYMR ddPTM_HeLa_A486_30min_R1 3 ILIVTQTPHYMR 12 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 ILIVTQT(1)PHYMR;ILIVTQT(1)PHYMR;ILIVTQT(1)PHYMR ;; 197.47 7.41E-17 4136700000 480054 572588 602900 231265 639880 506786 665968 652838 430234 459740 TRUE FALSE FALSE 446404.6936 527214.0416 836359.0262 538396.6075 559620.2838 444263.8959 499335.7625 504201.0388 467527.0295 344618.1116 1.295360512 1.529850068 2.42691547 1.562299222 1.623885295 1.289148425 1.448953917 1.463071794 1.35665252 1 18.394639 -6.032989378 2.297556947 1.347875303 1.744010899 0.277901336 0.299250139 0.446631642 4.706461656 0.111449342 0.11918203 9.27E-07 6.032989378 0.396135597 ILKLPSFELLHK ddPTM_HeLa_A485_30min_R1 2 ILKLPSFELLHK 12 1 F5GY55;Q16531 F5GY55 DDB1 DNA damage-binding protein 1 0 0 ; ; 138.98 0.00017764 23216000 61325 72593 50809 67885 85301 76185 108169 107934 59815 89139 FALSE FALSE TRUE 74966.53468 81082.11987 69605.36344 71593.38566 76808.13293 80173.9288 85057.80949 81463.01727 71819.32184 66918.28778 1.120269767 1.211658615 1.040154579 1.069862784 1.147789871 1.198086972 1.271069723 1.217350592 1.073239083 1 16.03011291 ILKS(ph)PEIQR ddPTM_HeLa_A485_30min_R1 6 ILKSPEIQR 9 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 1 0 ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR ;;;;; 174.72 1.40E-06 7284090000 6280050 6262110 4927550 7962040 8186100 7039000 9834330 10247610 5546380 10312400 TRUE FALSE FALSE 7677025.457 6994409.291 6750455.797 8396986.084 7371063.141 7407551.156 7733145.056 7734367.58 6659487.592 7741708.466 0.991644866 0.903471026 0.871959442 1.084642508 0.952123575 0.956836748 0.998893861 0.999051774 0.860209038 1 22.88422055 ILKS(ph)PEIQR ddPTM_HeLa_A486_30min_R1 5 ILKSPEIQR 9 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 1 0 ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR;ILKS(1)PEIQR ;;;; 147.18 4.32E-05 6768820000 9855770 9891150 5868620 4744630 10304920 10437560 13336400 12767300 7609920 13636500 TRUE FALSE FALSE 9164931.418 9107339.251 8141106.831 11045738.42 9012380.844 9149879.969 9999491.662 9860464.498 8269553.993 10221831.64 0.896603636 0.890969405 0.796443056 1.080602656 0.88167964 0.895131156 0.978248519 0.964647516 0.809009019 1 23.2851504 -5.187790822 24.99995479 0.939493822 0.864302018 0.207375385 0.073758887 243.3411121 82600.50511 0.01949426 0.033765046 6.49E-06 5.187790822 -0.075191805 ILLAELEQLK ddPTM_HeLa_A485_30min_R1 4 ILLAELEQLK 10 0 P08670;B0YJC4;A0A1B0GTT5 P08670 VIM Vimentin 0 0 ;;; ;;; 269.39 2.33E-45 104922000 255759 198682 195361 331761 293454 230426 313180 237254 239692 421060 FALSE FALSE TRUE 312651.7072 221916.1316 267633.1635 349884.2634 264236.6894 242490.7491 246266.5346 179067.0845 287795.9858 316097.491 0.989098984 0.702049646 0.846679177 1.106887189 0.835934156 0.767139114 0.779084117 0.566493217 0.910465897 1 18.27001006 -5.997584223 24.99895993 0.778788741 0.901605934 0.096296695 0.142868322 159.4266409 1649743.721 0.04444463 0.050088281 1.01E-06 5.997584223 0.122817193 ILLAELEQLK ddPTM_HeLa_A486_30min_R1 4 ILLAELEQLK 10 0 P08670;B0YJC4;A0A1B0GTT5 P08670 VIM Vimentin 0 0 ;;; ;;; 195.7 8.15E-14 124673000 219919 252142 177162 136235 401488 275523 300314 295328 227698 274020 FALSE FALSE TRUE 204503.8138 232161.3496 245763.871 317161.9649 351129.6313 241531.7736 225172.2608 228088.2614 247435.046 205403.6084 0.995619382 1.13026909 1.196492471 1.544091496 1.709461844 1.175888659 1.096242965 1.110439408 1.204628526 1 17.648102 -6.507228541 24.91649307 1.115464498 1.324200313 0.209806419 0.195022976 1251.334465 1992239.982 0.07870689 0.06731626 3.11E-07 6.507228541 0.208735815 ILLAELEQLKGQGK ddPTM_HeLa_A485_30min_R1 3 ILLAELEQLKGQGK 14 1 P08670;B0YJC4;A0A1B0GTT5 P08670 VIM Vimentin 0 0 ;; ;; 208.15 5.31E-22 418858000 486492 622275 363878 432435 677793 812610 993960 1334750 522160 615522 FALSE FALSE TRUE 594710.467 695044.6482 498491.6144 456057.8291 610309.549 855157.0031 781592.3261 1007400.47 626952.7225 462083.6932 1.287018944 1.504153162 1.078790751 0.986959366 1.320777076 1.85065393 1.691451868 2.180125558 1.356794736 1 18.81779465 -6.130802803 5.299847587 1.692262692 1.217778171 0.250361696 0.318777119 0.268198725 10.45731358 0.103336028 0.103725986 7.40E-07 6.130802803 -0.474484521 ILLAELEQLKGQGK ddPTM_HeLa_A486_30min_R1 4 ILLAELEQLKGQGK 14 1 P08670;B0YJC4;A0A1B0GTT5 P08670 VIM Vimentin 0 0 ;;; ;;; 228.25 1.07E-22 334899000 381838 303362.5 181465.5 160504.2 436783 322077.2 429894 441743 203813.9 473424 FALSE FALSE TRUE 355073.128 279322.9507 251733.8014 373661.889 381997.6033 282342.5897 322329.9742 341167.7621 221480.653 354875.5489 1.000556756 0.787101144 0.709357977 1.052937826 1.076426946 0.795610153 0.908290174 0.961372975 0.624107955 1 18.43695365 -10.01725619 15.37948258 1 0.88348185 0.060419961 0.141752167 0 0 0.13804793 0.033481541 9.61E-11 10.01725619 -0.11651815 ILLANFLAQTEALMR ddPTM_HeLa_A485_30min_R1 2 ILLANFLAQTEALMR 15 0 P06744-2;P06744;A0A2U3TZU2;CON__Q3ZBD7 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 262.35 1.23E-52 293050000 300640 451230 446670 309200 512750 386170 474290 547340 336090 467240 FALSE FALSE TRUE 367516.3308 503997.4233 611911.8205 326090.8131 461698.8096 406389.2641 372954.0669 413104.0068 403540.1802 350765.6669 1.047754571 1.436849358 1.744503177 0.929654307 1.31625998 1.158577656 1.063257046 1.177720757 1.150455185 1 18.42014802 -5.279063588 24.99656847 1.129316272 1.41241713 0.346728901 0.185311202 918.265764 1302382.403 0.05203213 0.077375516 5.26E-06 5.279063588 0.283100858 ILLANFLAQTEALMR ddPTM_HeLa_A486_30min_R1 2 ILLANFLAQTEALMR 15 0 P06744-2;P06744;A0A2U3TZU2;CON__Q3ZBD7 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 241.35 5.06E-31 240001000 529530 584120 581850 213110 688840 541910 627820 648450 536630 597810 FALSE FALSE TRUE 492412.6815 537832.2039 807157.9025 496130.85 602439.264 475054.6539 470732.7956 500812.0906 583145.5205 448114.4849 1.098854641 1.200211602 1.801231448 1.107152004 1.344386946 1.060118943 1.050474402 1.117598532 1.301331557 1 18.77350784 -6.257107586 24.41830744 1.109790201 1.320228062 0.20811014 0.19888389 454.2845001 2560804.771 0.067967602 0.065627517 5.53E-07 6.257107586 0.210437862 ILLLFGETELS(ph)PTATPR ddPTM_HeLa_A486_30min_R1 1 ILLLFGETELSPTATPR 17 0 Q8NCF5;Q8NCF5-2;H3BSZ7;Q8NCF5-3 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 ILLLFGET(0.001)ELS(0.975)PT(0.024)AT(0.001)PR 165.9 6.07E-12 408060000 71778 107760 113760 34531 117170 72399 126850 128000 96133 81518 TRUE FALSE FALSE 66746.73286 99220.70514 157810.9186 80389.9131 102473.446 63467.14748 95110.78832 98857.19422 104465.8858 61105.36221 1.092322023 1.623764291 2.582603439 1.315595067 1.676995968 1.038651031 1.556504779 1.617815371 1.709602596 1 15.89901137 ILLLFGETELSPT(ph)ATPR ddPTM_HeLa_A485_30min_R1 1 ILLLFGETELSPTATPR 17 0 Q8NCF5;Q8NCF5-2;H3BSZ7;Q8NCF5-3 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 ILLLFGETELS(0.075)PT(0.925)ATPR 281.68 5.77E-59 892650000 538620 719560 754420 605590 906230 727380 693030 890360 671670 709110 TRUE FALSE FALSE 658434.1608 803706.2827 1033511.352 638671.8483 816002.5592 765464.4921 544958.479 671997.814 806468.0081 532341.9272 1.23686324 1.509755745 1.941442707 1.199739896 1.532854201 1.437918851 1.02370009 1.262342453 1.514943623 1 19.02199367 -6.585699853 9.290514165 1.222455838 1.494207703 0.255680847 0.230399169 0.509776063 70.51611809 0.088487736 0.06848645 2.60E-07 6.585699853 0.271751864 ILLSQTTGVAIPLHAS(ph)SLDDVSLASTPK ddPTM_HeLa_A486_30min_R1 1 ILLSQTTGVAIPLHASSLDDVSLASTPK 28 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 ILLSQTTGVAIPLHAS(0.466)S(0.466)LDDVS(0.023)LAS(0.023)T(0.023)PK 140.74 2.11E-07 797590000 247650 315520 289210 28850 309670 238090 184040 232550 250950 81324 TRUE FALSE FALSE 230291.0139 290517.0461 401199.8573 67164.258 270828.301 208716.8765 137991.2454 179603.4415 272702.5481 60959.94107 3.777743381 4.765704182 6.581368851 1.101776951 4.442725769 3.423836586 2.263638104 2.946253529 4.47347132 1 15.89557389 -6.823929351 0.125203426 1.66E-10 6.652530081 0.279401471 1.390918164 12.98716351 1.117656027 22.45375356 31.27721129 1.50E-07 6.823929351 6.652530081 ILLSQTTGVAIPLHASSLDDVS(ph)LASTPK ddPTM_HeLa_A485_30min_R1 1 ILLSQTTGVAIPLHASSLDDVSLASTPK 28 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 ILLSQTTGVAIPLHAS(0.164)S(0.164)LDDVS(0.224)LAS(0.224)T(0.224)PK 127.14 4.35E-06 725790000 402040 404150 345670 175120 370850 525460 359390 427060 409150 202140 TRUE FALSE FALSE 491472.411 451411.8269 473547.7175 184686.3622 333926.8719 552972.2731 282603.3906 322322.8654 491262.6521 151750.2181 3.238693276 2.974702985 3.120573555 1.217041824 2.200503406 3.643963613 1.862293142 2.124035599 3.237311011 1 17.21133906 -10.91892537 2.499361258 0.004007719 2.588249103 0.313901604 0.718656424 9179911.506 4458442.353 53436108.74 0.187799581 1.21E-11 10.91892537 2.584241384 ILLSQTTGVAIPLHASSLDDVSLAS(ph)TPK ddPTM_HeLa_A485_30min_R1 1 ILLSQTTGVAIPLHASSLDDVSLASTPK 28 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 ILLSQTTGVAIPLHASSLDDVSLAS(0.5)T(0.5)PK 162.19 6.66E-14 199970000 51807 56152 51365 25638 69091 45125 59095 59566 46060 63073 TRUE FALSE FALSE 63331.28842 62718.48794 70367.05098 27038.53902 62212.05745 47487.67522 46468.87049 44957.3451 55303.81951 47350.06187 1.337512263 1.324570348 1.486102619 0.571034925 1.313874892 1.002906297 0.981389858 0.949467505 1.167977767 1 15.53107869 -5.211740364 24.99998069 1.00864888 1.376912749 0.483743973 0.181830367 318.2761561 160101.1666 0.046610543 0.080731698 6.14E-06 5.211740364 0.36826387 ILLSQTTGVAIPLHASSLDDVSLAST(ph)PK ddPTM_HeLa_A486_30min_R1 1 ILLSQTTGVAIPLHASSLDDVSLASTPK 28 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 ILLSQTTGVAIPLHASSLDDVSLAS(0.255)T(0.745)PK 151.23 3.44E-09 131870000 72982 72535 58658 9733.9 81578 48921 60409 53861 65419 24729 TRUE FALSE FALSE 67866.33868 66787.06243 81371.94852 22661.01112 71345.72656 42885.62441 45294.02926 41598.02608 71089.57159 18536.69744 3.66118824 3.602964479 4.389775944 1.222494524 3.848890925 2.313552592 2.44347891 2.24409047 3.835072122 1 14.17809661 -3.715425262 0.081813309 2.93E-15 7.578139474 0.320575037 0.919907897 130.0192678 1.440684762 32.16447031 125.4403286 0.000192564 3.715425262 7.578139474 ILLTLGIR ddPTM_HeLa_A486_30min_R1 2 ILLTLGIR 8 0 Q8N163-2;Q8N163;G3V119;H0YB24;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 0 ; ; 130.04 0.0028058 22229000 18414.7 20871.4 16870.1 9212.8 23562.1 18678.5 19519.3 19482.7 15618 21278.9 FALSE FALSE TRUE 17123.92462 19217.47425 23402.65452 21447.86399 20606.72171 16374.13658 14635.36469 15046.91451 16971.78082 15950.52494 1.073564957 1.204817668 1.467202779 1.344649413 1.291914955 1.02655785 0.917547525 0.943349173 1.064026474 1 13.96131628 -6.310015205 4.276141573 0.976919628 1.287966147 0.668565168 0.100804629 0.139472777 5.548664042 0.039303333 0.035206195 4.90E-07 6.310015205 0.31104652 ILLVDS(ph)PGMGNADDEQQEEGTSSK ddPTM_HeLa_A485_30min_R1 3 ILLVDSPGMGNADDEQQEEGTSSK 24 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 1 0 ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK ;; 268.99 3.17E-62 416567000 393267 401825 324865 460276 514410 422945 547620 603830 381464 537020 TRUE FALSE FALSE 480747.8874 448814.9383 445046.0823 485419.7124 463193.5342 445089.7462 430616.5134 455739.7457 458020.3258 403150.7971 1.192476589 1.113268141 1.103919639 1.204064871 1.148933693 1.104027945 1.06812765 1.130444858 1.136101749 1 18.62096005 -6.303488254 4.53249533 1.093824716 1.150690252 0.332684634 0.045610795 0.304801345 14.52067099 0.016246789 0.014595539 4.97E-07 6.303488254 0.056865537 ILLVDS(ph)PGMGNADDEQQEEGTSSK ddPTM_HeLa_A486_30min_R1 3 ILLVDSPGMGNADDEQQEEGTSSK 24 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 1 0 ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK ;; 253.49 2.82E-61 397004000 253431 261509 173854 105836 251846 232655 277878 306466 197082 284280 TRUE FALSE FALSE 235666.7956 240786.0744 241174.9248 246391.5567 220257.1263 203952.3916 208349.9853 236690.3819 214165.2264 213094.4376 1.105926547 1.129950069 1.131774848 1.156255224 1.033612743 0.957098617 0.977735447 1.110729987 1.00502495 1 17.70113341 -5.843298717 5.560749107 1.013301178 1.130712131 0.679942544 0.039464149 0.131103302 6.712782347 0.013129805 0.015065305 1.43E-06 5.843298717 0.117410953 ILMVGLDAAGK ddPTM_HeLa_A485_30min_R1 2 ILMVGLDAAGK 11 0 P84077;P61204;C9J1Z8;F5H423;P61204-2;P84085;F5H0C7;C9JPM4;F5H1V1;F5H6T5;F8WDB3;P18085 P84077;P18085 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 0 ; ; 166.33 1.21E-05 35066000 51482 50951 49300 62936 76645 59782 73019 67711 56704 93407 FALSE FALSE TRUE 62933.99329 56909.27624 67538.12154 66374.03432 69013.95468 62912.09308 57417.89414 51104.77108 68083.97268 70122.35393 0.897488315 0.811571105 0.963146811 0.94654601 0.984193354 0.897176001 0.818824397 0.728794289 0.970931078 1 16.09758681 -6.533513692 21.88564465 0.857174475 0.920573496 0.024076371 0.083809837 114.3477418 235305.5016 0.032018461 0.024847519 2.93E-07 6.533513692 0.063399021 ILMVGLDAAGK ddPTM_HeLa_A486_30min_R1 2 ILMVGLDAAGK 11 0 P84077;P61204;C9J1Z8;F5H423;P61204-2;P84085;F5H0C7;C9JPM4;F5H1V1;F5H6T5;F8WDB3;P18085 P84077;P18085 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 4 0 0 ; ; 157.96 2.41E-05 71902000 45161 47766 35284 20014.6 55837 47768 58570 54658 39749 52822 FALSE FALSE TRUE 41995.44711 43980.8482 48946.90974 46595.00028 48833.4028 41874.86983 43915.16651 42213.56658 43194.47532 39595.02739 1.060624272 1.11076696 1.236188304 1.176789192 1.233321607 1.057579009 1.109108123 1.066133031 1.090906565 1 15.27303164 -6.284397899 24.76484323 1.071651324 1.165378641 0.439015514 0.055545066 764.1629897 824282.3222 0.020438549 0.018039521 5.20E-07 6.284397899 0.093727317 ILNDLS(ph)SDAPGVPR ddPTM_HeLa_A485_30min_R1 2 ILNDLSSDAPGVPR 14 0 C9J4L5;C9JBT4;H7C3I0;E7EWP8;C9J896;P16220-3;P16220;P16220-1 C9J4L5 CREB1 Cyclic AMP-responsive element-binding protein 1 1 0 ILNDLS(0.5)S(0.5)DAPGVPR;ILNDLS(0.814)S(0.186)DAPGVPR ; 103.88 0.00028114 32970000 68360 81385 92378 73291 119150 88745 110618 101569 96718 126816 TRUE FALSE FALSE 83566.44616 90902.26779 126552.4664 77294.70175 107287.0076 93391.55097 86983.56063 76659.0435 116128.4154 95203.10508 0.877770175 0.954824611 1.329289273 0.811892655 1.12692761 0.980971691 0.913663063 0.80521579 1.219796511 1 16.53872101 -6.503863586 23.90899558 0.96541974 1.025300935 0.006178141 0.164091321 2029.175695 2551421.963 0.057259914 0.049640455 3.13E-07 6.503863586 0.059881195 ILNDLSS(ph)DAPGVPR ddPTM_HeLa_A485_30min_R1 1 ILNDLSSDAPGVPR 14 0 C9J4L5;C9JBT4;H7C3I0;E7EWP8;C9J896;P16220-3;P16220;P16220-1 C9J4L5 CREB1 Cyclic AMP-responsive element-binding protein 1 1 0 ILNDLS(0.412)S(0.588)DAPGVPR 75.462 0.0074704 26527000 22116 28016 34659 26462 41399 28290 33008 40160 40884 49769 TRUE FALSE FALSE 27035.6279 31292.22749 47480.80638 27907.55205 37277.1702 29771.22066 25955.57115 30310.69703 49089.04379 37362.50423 0.723603207 0.83753025 1.270814346 0.746940084 0.997716052 0.796820804 0.694695703 0.811259782 1.313858501 1 15.18930353 -7.748699455 24.99709895 1.156929287 0.866088572 0.317404721 0.174033387 241.244773 473354.1827 0.12030403 0.044807134 1.78E-08 7.748699455 -0.290840715 ILNFLMHPKPSGKPLPK ddPTM_HeLa_A485_30min_R1 2 ILNFLMHPKPSGKPLPK 17 2 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C028;P35659-2 B4DFG0 DEK Protein DEK 0 0 ; ; 158.17 8.99E-11 65387000 98871 102171 70124 94990 132452 106817 172734 157806 67729 129856 FALSE FALSE TRUE 120864.5128 114119.0097 96065.7857 100179.0632 119264.6138 112409.7729 135827.9698 119103.8311 81321.58905 97485.28902 1.239823096 1.170628008 0.985438795 1.027632622 1.223411399 1.153094729 1.393317609 1.221762096 0.834193445 1 16.57289691 -7.756740925 24.99955754 0.917096686 1.173294956 0.456652065 0.1132984 105.7284328 562584.1286 0.090051982 0.031522532 1.75E-08 7.756740925 0.256198269 ILNFLMHPKPSGKPLPK ddPTM_HeLa_A486_30min_R1 2 ILNFLMHPKPSGKPLPK 17 2 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C028;P35659-2 B4DFG0 DEK Protein DEK 0 0 ; ; 134.44 1.30E-06 32201000 109798 91691 57336 31664.4 90055 93774 127288 108133 82175 133087 FALSE FALSE TRUE 102101.7272 84425.07123 79538.03471 73716.32343 78759.46217 82205.1173 95439.19608 83513.47643 89297.99516 99761.14895 1.023461821 0.846272042 0.79728467 0.738928172 0.789480304 0.824019352 0.956676994 0.837134268 0.89511795 1 16.60619046 -8.317743251 0.689463212 1.000508897 0.837071312 0.247101362 0.078235069 1.759733734 1.655702397 0.087836164 0.032102761 4.81E-09 8.317743251 -0.163437585 ILNT(ph)SPDGHPYEK ddPTM_HeLa_A485_30min_R1 3 ILNTSPDGHPYEK 13 0 Q16600 Q16600 ZNF239 Zinc finger protein 239 1 0 ILNT(0.5)S(0.5)PDGHPYEK;ILNT(0.5)S(0.5)PDGHPYEK;ILNT(0.5)S(0.5)PDGHPYEK ;; 81.594 0.0055985 705530000 638480 742660 615210 705610 992930 831650 1011630 1159180 736300 953270 TRUE FALSE FALSE 780507.6733 829507.6267 842801.78 744155.6876 894070.4028 875193.908 795486.9862 874889.2875 884068.6563 715637.3326 1.090646949 1.159117319 1.177693982 1.03985029 1.249334491 1.222957311 1.111578379 1.222531648 1.235358492 1 19.44886912 -4.265075217 4.423330321 1.165351466 1.085657429 0.051771646 0.080423539 0.57212766 27.82107431 0.019464548 0.14235569 5.43E-05 4.265075217 -0.079694037 ILNT(ph)SPDGHPYEK ddPTM_HeLa_A486_30min_R1 1 ILNTSPDGHPYEK 13 0 Q16600 Q16600 ZNF239 Zinc finger protein 239 1 0 ILNT(0.5)S(0.5)PDGHPYEK 68.845 0.014809 230120000 384310 422860 276890 127160 453860 443310 469930 472050 321740 449250 TRUE FALSE FALSE 357371.8536 389351.0336 384109.2234 296034.9063 396932.6467 388618.9194 352348.5436 364574.5198 349628.6823 336754.8759 1.061222507 1.156185289 1.140619634 0.879081277 1.178699034 1.154011262 1.046305692 1.082610961 1.038229013 1 18.36133931 -7.927618124 1.388036406 1.00004216 1.090948946 0.110981608 0.08127837 0.987831915 4.255446569 0.078385709 0.023829323 1.18E-08 7.927618124 0.090906786 ILPGSMIVS(ph)SDDTVDSTIDR ddPTM_HeLa_A485_30min_R1 3 ILPGSMIVSSDDTVDSTIDR 20 0 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 ILPGSMIVS(0.908)S(0.092)DDTVDSTIDR;ILPGSMIVS(0.493)S(0.493)DDT(0.008)VDS(0.002)T(0.002)IDR;ILPGS(0.001)MIVS(0.5)S(0.5)DDTVDSTIDR ;; 174.95 5.96E-14 59526000 50741 77039 68401 56626 74866 52059 60694 67073 53778 72365 TRUE FALSE FALSE 62028.1604 86048.0409 93705.3763 59719.335 67412.07817 54784.72874 47726.23108 50623.24158 64570.75132 54325.73728 1.14178221 1.583927715 1.724879974 1.09928255 1.240886577 1.008448877 0.878519712 0.931846379 1.188584906 1 15.72934823 -5.613140864 1.911188527 1.008676169 1.483066957 0.534678743 0.178678738 0.251319153 1.871303827 0.060457323 0.088885523 2.44E-06 5.613140864 0.474390788 ILPGSMIVS(ph)SDDTVDSTIDR ddPTM_HeLa_A486_30min_R1 1 ILPGSMIVSSDDTVDSTIDR 20 0 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 ILPGSMIVS(0.5)S(0.5)DDTVDSTIDR 120.9 5.03E-06 33496000 26970 34208 26060 12708 28989 23693 30373 24009 18905 33868 TRUE FALSE FALSE 25079.54227 31497.2335 36151.12991 29584.86623 25352.92931 20769.99855 22773.35415 18542.67481 20543.70062 25387.23236 0.987880125 1.240672203 1.423988618 1.165344288 0.998648807 0.818127721 0.897039655 0.730393709 0.809213873 1 14.6318155 -5.911145301 2.433456919 0.837558475 1.228356143 0.662172948 0.118752004 0.169437104 2.039996056 0.041778135 0.048234454 1.23E-06 5.911145301 0.390797668 ILPGSMIVSS(ph)DDTVDSTIDR ddPTM_HeLa_A486_30min_R1 2 ILPGSMIVSSDDTVDSTIDR 20 0 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 ILPGSMIVS(0.447)S(0.553)DDTVDSTIDR;ILPGSMIVS(0.46)S(0.538)DDT(0.002)VDSTIDR ; 129.62 4.93E-07 59262000 64982 72158 71397 31172.4 77067 68578 83275 76415 64138 75696 TRUE FALSE FALSE 60427.09737 66439.93729 99043.83048 72570.92257 67400.53824 60117.54361 62438.71421 59016.97263 69697.53348 56741.2289 1.064959264 1.170928769 1.74553552 1.278980452 1.187858274 1.059503729 1.100411736 1.04010741 1.228340218 1 15.79210978 -5.877372867 3.00317397 1.091549518 1.337192943 0.276787656 0.173781016 0.3527812 6.387054999 0.060038907 0.070079327 1.33E-06 5.877372867 0.245643424 ILPGSMIVSSDDT(ph)VDSTIDR ddPTM_HeLa_A486_30min_R1 1 ILPGSMIVSSDDTVDSTIDR 20 0 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 ILPGSMIVS(0.005)S(0.005)DDT(0.33)VDS(0.33)T(0.33)IDR 65.716 0.0055211 0 22061 18983 19142 9023.1 19189 21798 20307 21779 16777 25979 TRUE FALSE FALSE 20514.63782 17478.71795 26554.29504 21006.2328 16782.13669 19108.78439 15225.97381 16820.39713 18231.24387 19473.68931 1.053454099 0.897555552 1.363598578 1.078698159 0.861785172 0.981261644 0.781874126 0.863749897 0.936198765 1 14.24923861 -5.715867809 6.53853426 0.895092386 1.104780605 0.378331139 0.121666165 0.207015724 21.29782547 0.036814906 0.047093093 1.92E-06 5.715867809 0.209688219 ILPHHQNTGGFFVAVLVK ddPTM_HeLa_A485_30min_R1 2 ILPHHQNTGGFFVAVLVK 18 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 0 ; ; 65.716 0.011008 33442000 34160.2 32400 25912.8 34797 33997.4 27872.7 37579 48558 20929.4 57450 FALSE FALSE TRUE 41759.01864 36188.89816 35499.02304 36697.872 30612.49948 29332.07147 29549.93966 36649.07436 25129.7386 43128.77229 0.968240375 0.839089458 0.823093753 0.850890718 0.709792973 0.680104485 0.685156059 0.849759277 0.582667608 1 15.39636303 -4.259841751 0.776763699 0.743606544 1.081958368 0.236535222 0.109953549 3.503312834 1.622109154 0.040958014 1.035743335 5.50E-05 4.259841751 0.338351824 ILPIMFPSLYR ddPTM_HeLa_A485_30min_R1 1 ILPIMFPSLYR 11 0 H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5;H0YN84;Q96B13;Q13362-2 H0YJ75 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform 0 0 107.57 0.0079918 7612400 2305.5 2811.3 3065.4 1968.1 3094.7 2315.2 3266.3 3069.2 2201 2656 FALSE FALSE TRUE 2818.350521 3140.05708 4199.419022 2075.61232 2786.580802 2436.420292 2568.428322 2316.473888 2642.720511 1993.90808 1.413480666 1.574825395 2.106124682 1.040976934 1.397547274 1.221932102 1.288137777 1.161775666 1.325397363 1 10.96138319 -5.281170073 24.9986842 1.22402892 1.685811836 0.562197601 0.198800481 592.9357941 751245.1185 0.05490407 0.081561257 5.23E-06 5.281170073 0.461782915 ILPIMFPSLYR ddPTM_HeLa_A486_30min_R1 1 ILPIMFPSLYR 11 0 H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5;H0YN84;Q96B13;Q13362-2 H0YJ75 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform 0 0 149.94 0.0004736 8084400 2925.2 2388.8 2396.7 566.63 2473.4 2022.9 3260.4 2325 2444.7 2572.6 FALSE FALSE TRUE 2720.158586 2199.502788 3324.766426 1319.143276 2163.163108 1773.335165 2444.613435 1795.648254 2656.608564 1928.404215 1.410574901 1.140581819 1.724102447 0.684059527 1.121737389 0.919586854 1.267687249 0.931157607 1.377620181 1 10.91319177 -5.257820324 24.99993085 1.047738151 1.396635905 0.377855178 0.223656649 349.1876583 2412129.968 0.058277326 0.096139898 5.52E-06 5.257820324 0.348897754 ILPPLS(ph)PPQHR ddPTM_HeLa_A485_30min_R1 2 ILPPLSPPQHR 11 0 A0A087WV20;A0A087WTU9;Q8TCU4-3;Q8TCU4-2;Q8TCU4 A0A087WV20 ALMS1 Alstrom syndrome protein 1 1 0 ILPPLS(1)PPQHR;ILPPLS(1)PPQHR ; 115.12 0.00026891 229590000 154379 247740 230060 166748 272490 226990 242370 274810 200958 226160 TRUE FALSE FALSE 188720.0759 276711.0379 315168.7676 175857.021 245359.9388 238874.8454 190585.6695 207412.4166 241288.4273 169782.4742 1.111540381 1.629797418 1.856309193 1.035778409 1.44514291 1.406946427 1.12252852 1.2216362 1.421162158 1 17.37332802 -8.055069306 0.222773949 0.905160592 1.541479068 0.190625365 0.236679658 5.668172177 0.979349892 1.298114575 0.781132995 8.81E-09 8.055069306 0.636318476 ILPPLS(ph)PPQHR ddPTM_HeLa_A486_30min_R1 3 ILPPLSPPQHR 11 0 A0A087WV20;A0A087WTU9;Q8TCU4-3;Q8TCU4-2;Q8TCU4 A0A087WV20 ALMS1 Alstrom syndrome protein 1 1 0 ILPPLS(1)PPQHR;ILPPLS(1)PPQHR;ILPPLS(1)PPQHR ;; 144.27 7.29E-07 179722000 142700 178494 166144 53216.6 210780 160681 177510 175377 144479 163303 TRUE FALSE FALSE 132697.4669 164349.4854 230479.4063 123890.9342 184342.007 140857.8119 133095.1205 135447.4856 157002.556 122410.8659 1.084033398 1.342605366 1.88283454 1.012090988 1.505928462 1.150696965 1.087281914 1.106498876 1.282586762 1 16.9013721 -6.364318172 7.016942836 1.127323031 1.372907572 0.212288636 0.231267249 0.429465306 25.5440271 0.081449665 0.07166826 4.32E-07 6.364318172 0.24558454 ILPTLEAVAALGNK ddPTM_HeLa_A485_30min_R1 1 ILPTLEAVAALGNK 14 0 Q12905;B4DY09;X6R6Z1 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 0 167.6 2.26E-09 0 4239.9 4792.4 4015.7 5626.9 6285.5 4575.8 6505.8 6770.6 3992.9 6643.6 FALSE FALSE TRUE 5183.051128 5352.829492 5501.274537 5934.283299 5659.69355 4815.381812 5115.782683 5110.099734 4794.238405 4987.472786 1.039213916 1.073254877 1.103018457 1.18983773 1.134781841 0.965495356 1.025726435 1.024586991 0.961256053 1 12.28409325 -6.258652004 24.99165882 0.998844244 1.110357309 0.64610112 0.041613973 179.2003779 1606720.677 0.015443074 0.01479617 5.51E-07 6.258652004 0.111513065 ILPTLEAVAALGNK ddPTM_HeLa_A486_30min_R1 1 ILPTLEAVAALGNK 14 0 Q12905;B4DY09;X6R6Z1 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 0 188.06 1.71E-14 0 8284.6 10037 7570.2 3388.4 11294 10057 10299 9701.7 8783 10763 FALSE FALSE TRUE 7703.892322 9241.631566 10501.58418 7888.36644 9877.401208 8816.269592 7722.081268 7492.834697 9544.317512 8067.874745 0.954884969 1.145485256 1.30165434 0.977750237 1.224287873 1.092762329 0.957139459 0.928724718 1.183002688 1 12.97797297 -6.57984142 7.083549217 1.012298701 1.12762273 0.1531193 0.114712098 0.382792338 38.63560682 0.043281563 0.033485829 2.63E-07 6.57984142 0.115324029 ILPTS(ph)ETK ddPTM_HeLa_A485_30min_R1 1 ILPTSETK 8 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 ILPT(0.227)S(0.77)ET(0.003)K 82.831 0.0070129 307720000 563910 567550 458540 790710 781260 618420 828730 845160 539890 1008000 TRUE FALSE FALSE 689349.834 633920.0355 628173.0274 833904.4851 703475.0112 650799.5149 651665.0654 637883.1848 648240.9708 756724.1509 0.910965817 0.837716141 0.830121553 1.101992693 0.929632034 0.860022129 0.861165941 0.842953385 0.85664105 1 19.52940796 -9.1586209 14.30471944 1.000000005 0.892859885 0.151751795 0.07634053 0 0 0.07889184 0.019134082 6.94E-10 9.1586209 -0.107140119 ILQALHECLAALPRPQLR ddPTM_HeLa_A485_30min_R1 1 ILQALHECLAALPRPQLR 18 1 A0A0B4J2A0;Q9UHJ6 A0A0B4J2A0 TRPV1;SHPK Sedoheptulokinase 0 0 165.9 1.66E-14 15317000 6297.7 6787.2 8107.9 6996.7 8650.5 6896.2 8547.8 9834.3 6295.7 9370.6 FALSE FALSE TRUE 7698.601638 7580.903999 11107.34961 7378.912004 7789.225846 7257.274368 6721.492701 7422.422505 7559.189242 7034.681873 1.09437808 1.077647026 1.578941281 1.04893329 1.107260568 1.031642155 0.95547927 1.055118432 1.074560212 1 12.78026947 -5.469917986 24.99993745 1.039572636 1.246535133 0.346542651 0.133010093 380.6090943 179664.6777 0.037815397 0.056088808 3.39E-06 5.469917986 0.206962497 ILQALHECLAALPRPQLR ddPTM_HeLa_A486_30min_R1 1 ILQALHECLAALPRPQLR 18 1 A0A0B4J2A0;Q9UHJ6 A0A0B4J2A0 TRPV1;SHPK Sedoheptulokinase 0 0 104.76 9.60E-05 20846000 6037.4 5139.2 3567.4 2266.2 5759.4 5538.6 6248.2 6144.8 4633.7 6044.2 FALSE FALSE TRUE 5614.209437 4731.951075 4948.792818 5275.828127 5037.002348 4855.303844 4684.834273 4745.76318 5035.352847 4530.692979 1.239150272 1.044421041 1.092281653 1.164463836 1.111750977 1.071647067 1.034021571 1.047469604 1.111386905 1 12.14551602 -6.294950908 3.052029846 1.052460018 1.126557775 0.348747954 0.053624978 0.343694786 6.476649196 0.019604202 0.017803593 5.07E-07 6.294950908 0.074097757 ILQAVNFPFLVK ddPTM_HeLa_A485_30min_R1 1 ILQAVNFPFLVK 12 0 K7ERP6;P17612-2;P17612;Q15136 K7ERP6 PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit alpha 0 0 143.86 0.00033625 0 1625 1505.5 1324.4 2167.1 2163.9 1594.2 2574 2105.1 1339.9 3565.9 FALSE FALSE TRUE 1986.475644 1681.555129 1814.350673 2285.483186 1948.454518 1677.669847 2024.043872 1588.820924 1608.80564 2676.986756 0.742056583 0.628152203 0.677758554 0.853752145 0.727853626 0.626700839 0.756090357 0.59351094 0.600976317 1 11.38639429 -11.29450819 2.503311728 2.688971216 0.690716863 0.588717866 0.077815017 6277280.176 1492557.516 59848387.9 0.020784511 5.08E-12 11.29450819 -1.998254353 ILQDSNDS(ph)PLAEREPGEVIDSLVGK ddPTM_HeLa_A485_30min_R1 1 ILQDSNDSPLAEREPGEVIDSLVGK 25 1 A0A1W2PR54;Q5JUX0 A0A1W2PR54 SPIN3 Spindlin-3 1 0 ILQDSNDS(1)PLAEREPGEVIDSLVGK 173.25 1.47E-14 30169000 8098.6 7879.7 6207.2 7974 10036 9040.1 12894 14628 7324.5 10980 TRUE FALSE FALSE 9900.10563 8801.162371 8503.501583 8409.599429 9036.780601 9513.425657 10139.09157 11040.46006 8794.459966 8242.888072 1.201048169 1.067727997 1.031616772 1.020224872 1.096312424 1.15413743 1.230041155 1.339392209 1.066914883 1 13.00893419 -6.30724679 3.19507567 1.187246387 1.07467256 0.098559709 0.097865713 0.404044454 8.335940693 0.035868989 0.032313772 4.93E-07 6.30724679 -0.112573827 ILQDSNDS(ph)PLAEREPGEVIDSLVGK ddPTM_HeLa_A486_30min_R1 2 ILQDSNDSPLAEREPGEVIDSLVGK 25 1 A0A1W2PR54;Q5JUX0 A0A1W2PR54 SPIN3 Spindlin-3 1 0 ILQDS(0.318)NDS(0.682)PLAEREPGEVIDSLVGK;ILQDS(0.013)NDS(0.987)PLAEREPGEVIDSLVGK ; 95.751 0.0010859 49219000 39121 42109.9 29053.2 16390.3 48536.8 41953 50142 49152 34807 55973 TRUE FALSE FALSE 36378.81992 38772.95816 40303.37711 38157.44672 42448.86196 36777.26541 37595.94125 37961.16258 37824.09879 41956.99648 0.867050146 0.924111863 0.960587756 0.909441808 1.011723086 0.876546667 0.896058927 0.904763586 0.901496817 1 15.35662378 -4.649203896 0.005044285 1.829181332 7.28E-07 0.110778724 0.044390796 80556.6673 71.93424275 12625.3111 13468.08334 2.24E-05 4.649203896 -1.829180603 ILQEAQNLMALTNVDT(ph)PLKGGLNT(ph)PLHESDFSGVT(ph)PQR ddPTM_HeLa_A485_30min_R1 1 ILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQR 38 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 3 0 ILQEAQNLMALT(0.106)NVDT(0.888)PLKGGLNT(0.948)PLHES(0.065)DFS(0.198)GVT(0.795)PQR 65.283 0.0014338 67225000 5788.3 7446.3 6256.3 3314.2 8726.8 6807.5 7117.6 9787.1 4881.7 5728.4 TRUE FALSE FALSE 7075.887366 8317.080011 8570.765716 3495.246354 7857.92915 7163.930174 5596.866615 7386.798379 5861.412412 4300.415303 1.645396285 1.934017862 1.99300884 0.81276949 1.827248904 1.66586938 1.301471188 1.71769419 1.362987525 1 12.07026028 -11.08932495 0.100285681 5.72E-11 2.0873546 0.275351813 0.319450697 118.6794915 1.639068112 35.62104574 6.96211995 8.14E-12 11.08932495 2.0873546 ILQEKLDQPVS(ph)APPS(ph)PR ddPTM_HeLa_A485_30min_R1 3 ILQEKLDQPVSAPPSPR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 ILQEKLDQPVS(1)APPS(1)PR;ILQEKLDQPVS(1)APPS(1)PR;ILQEKLDQPVS(1)APPS(1)PR ;; 107.9 0.00020443 1036850000 978595 2216924 1282265 598294 2323466 2873948 4026560 7080400 1326395 1119228 TRUE FALSE FALSE 1196280.082 2476173.977 1756628.183 630977.2863 2092133.567 3024423.473 3166252.562 5343920.798 1592590.31 840225.0575 1.423761492 2.947036577 2.090663885 0.750962234 2.489968073 3.599539726 3.768338654 6.360106439 1.89543301 1 19.68041629 -6.161389164 3.60646018 3.695108327 1.881876752 0.177471729 1.426590368 0.341827697 8.243861395 0.480107487 0.477704986 6.90E-07 6.161389164 -1.813231575 ILQEKLDQPVS(ph)APPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 ILQEKLDQPVSAPPSPR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 ILQEKLDQPVS(1)APPS(1)PR;ILQEKLDQPVS(1)APPS(1)PR ; 119.41 6.60E-05 345590000 1275100 730960 652780 451110 1647840 700760 1410220 1550170 487980 1411080 TRUE FALSE FALSE 1185722.075 673036.0675 905553.8981 1050206.878 1441152.542 614307.356 1057368.04 1197230.131 530278.4993 1057736.383 1.120999611 0.636298494 0.856124373 0.992881491 1.362487444 0.58077548 0.999651763 1.131879502 0.501333326 1 20.01254868 -10.14858125 13.45658321 1 0.914923324 0.010574851 0.258245625 0 0 0.24157381 0.058590255 7.10E-11 10.14858125 -0.085076676 ILQEKLDQPVSAPPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 ILQEKLDQPVSAPPSPR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 ILQEKLDQPVSAPPS(1)PR;ILQEKLDQPVSAPPS(1)PR ; 190.19 2.99E-18 602930000 418620 1155800 675020 226380 953490 1354300 1441500 2927500 540920 368570 TRUE FALSE FALSE 511740.5748 1290960.756 924737.9879 238746.5662 858557.1877 1425209.054 1133511.749 2209526.035 649477.6824 276692.282 1.849493492 4.665691238 3.34211703 0.862859507 3.102931464 5.150881128 4.096651127 7.985499338 2.34729237 1 18.07792288 -6.152779203 5.841906779 4.545228933 2.770780679 0.088692458 1.955567317 0.444292258 20.3982183 0.631047227 0.631982203 7.03E-07 6.152779203 -1.774448253 ILQEKLDQPVSAPPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 ILQEKLDQPVSAPPSPR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 ILQEKLDQPVS(0.001)APPS(0.999)PR 120.52 2.32E-05 86409000 268690 107160 106190 67246 244930 90604 157970 208790 66109 209710 TRUE FALSE FALSE 249856.2185 98668.25133 147309.6119 156552.0864 214208.5955 79426.19967 118444.2352 161253.0749 71839.38135 157197.251 1.589443943 0.627671608 0.937100432 0.995895828 1.362673928 0.505264559 0.753475232 1.025800857 0.457001512 1 17.26221646 -6.267844278 24.99048075 0.750243925 1.061056949 0.261433917 0.29358575 830.4862134 3240361.898 0.099732405 0.090105532 5.40E-07 6.267844278 0.310813023 ILQLCMGNHELYMR ddPTM_HeLa_A485_30min_R1 8 ILQLCMGNHELYMR 14 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;;;;;; ;;;;;;; 266.35 2.04E-41 447311000 339190 394050 387344 354692 491888 434268 514864 542613 374588 532100 FALSE FALSE TRUE 414641.6453 440130.7197 530638.6643 374067.9258 442913.9036 457005.601 404859.1003 409536.311 449764.3757 399457.2626 1.038012534 1.101821799 1.328399091 0.936440418 1.108789212 1.144066321 1.013522943 1.025231857 1.125938662 1 18.60768163 -6.365555873 0.675951434 1.041011473 1.125002756 0.073886317 0.098781934 2.128889929 2.096923816 0.078626337 0.073637549 4.31E-07 6.365555873 0.083991283 ILQLCMGNHELYMR ddPTM_HeLa_A486_30min_R1 8 ILQLCMGNHELYMR 14 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;;;;;; ;;;;;;; 234.85 2.93E-30 420012000 275333 340899 348094 112213.5 465911 348475 422513 399223 359510 379147 FALSE FALSE TRUE 256033.5785 313884.9217 482885.3191 261238.699 407472.0979 305483.6975 316795.7785 308328.6379 390672.6163 284206.1234 0.900872844 1.104427019 1.699067259 0.91918744 1.433720333 1.074866699 1.114669082 1.084876829 1.37461013 1 18.11657811 ILQLLAETFHHKR ddPTM_HeLa_A485_30min_R1 2 ILQLLAETFHHKR 13 1 E9PDU5;A0A087X295;Q9NNW5;Q6PKC6;E9PBK6 E9PDU5 WDR6 WD repeat-containing protein 6 0 0 ; ; 93.011 0.0035725 9713500 11274.6 12233.7 10311.2 8918.6 16249.6 11441.6 14436 16560.1 8463.5 13206.4 FALSE FALSE TRUE 13782.59587 13664.3248 14125.74196 9405.800535 14631.73277 12040.66448 11351.63067 12498.70951 10162.04682 9914.287526 1.390175122 1.378245765 1.424786393 0.948711696 1.47582292 1.214476023 1.144976948 1.260676521 1.024990126 1 13.27529338 -1.000000002 0.087884654 0.801685027 2.483789495 0.397864609 0.140605242 170.3282466 1.08194573 2.791190312 34.57460099 0.099999999 1.000000002 1.682104468 ILQSQDFSLDS(ph)SAEEEGLR ddPTM_HeLa_A486_30min_R1 2 ILQSQDFSLDSSAEEEGLR 19 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 ILQSQDFSLDS(0.796)S(0.204)AEEEGLR;ILQSQDFS(0.006)LDS(0.837)S(0.157)AEEEGLR ; 107.57 2.00E-05 41232000 107983 112800 85793 42551 142089 97947 125058 119702 104018 127083 TRUE FALSE FALSE 100413.9493 103861.3172 119014.3472 99060.87841 124266.8727 85863.29499 93767.16567 92448.46768 113034.364 95260.58963 1.054097499 1.090286315 1.249355559 1.03989361 1.304494053 0.901351706 0.984322751 0.970479692 1.186580562 1 16.53959186 -6.276456985 24.99197122 1.00518792 1.144106489 0.316836649 0.101986419 1007.656826 1676915.402 0.035017337 0.031011704 5.29E-07 6.276456985 0.138918568 ILQVSFK ddPTM_HeLa_A485_30min_R1 1 ILQVSFK 7 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 0 0 108.7 0.021953 40019000 27423 37883 36591 30338 60055 33273 47674 43715 30802 57028 FALSE FALSE TRUE 33523.15174 42313.08731 50127.53358 31995.28812 54075.71333 35015.12283 37488.06044 32993.82771 36983.67887 42811.96912 0.783032232 0.988347142 1.170876617 0.747344464 1.263098018 0.817881624 0.875644387 0.770668306 0.863863065 1 15.38572657 ILQVSFK ddPTM_HeLa_A486_30min_R1 1 ILQVSFK 7 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 0 0 108.46 0.022202 41867000 42704 45621 34889 17900 53583 54568 58483 56245 43182 57749 FALSE FALSE TRUE 39710.67012 42005.82581 48398.95516 41672.10462 46862.1205 47835.95497 43849.93483 43439.24132 46925.05053 43288.27452 0.917353962 0.970374224 1.118061547 0.96266495 1.082559215 1.105055711 1.012974883 1.003487476 1.084012959 1 15.40168868 -4.555617335 8.118222455 1.045541475 0.930235236 0.432172393 0.048573088 0.165100755 35.64779894 0.012011937 0.03253891 2.78E-05 4.555617335 -0.115306239 ILRLS(ph)TFEK ddPTM_HeLa_A485_30min_R1 2 ILRLSTFEK 9 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 ILRLS(0.979)T(0.021)FEK;ILRLS(0.566)T(0.434)FEK ; 177.16 4.91E-07 419720000 300931 242956 194771 271714 349880 253920 454570 475320 309461 405380 TRUE FALSE FALSE 367872.0628 271367.5908 266824.898 286557.0478 315044.7187 267214.8586 357447.406 358747.0247 371566.9842 304326.2265 1.208808281 0.891699654 0.876772604 0.941611412 1.035220403 0.878053994 1.174553407 1.178823885 1.220949599 1 18.21525914 -6.774940289 24.99804346 1.158483777 0.965536506 0.376089067 0.107370659 226.0744952 418591.7247 0.043727897 0.029664976 1.68E-07 6.774940289 -0.192947271 ILRLS(ph)TFEK ddPTM_HeLa_A486_30min_R1 2 ILRLSTFEK 9 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 ILRLS(0.874)T(0.126)FEK;ILRLS(0.888)T(0.112)FEK ; 127.85 0.00013071 500400000 285270 302632 167439 130287 252774 324943 429655 479425 202973 309743 TRUE FALSE FALSE 265274.0461 278650.3382 232275.865 303314.7203 221068.7279 284854.8364 322150.7746 370270.3933 220566.8631 232181.3367 1.142529584 1.200140985 1.000407131 1.306369946 0.952138234 1.226863625 1.387496425 1.594746583 0.949976713 1 17.82489248 -6.513168402 24.42891798 1.286126144 1.124533873 0.048855328 0.196117175 725.479293 1825144.311 0.069312006 0.056969374 3.07E-07 6.513168402 -0.161592271 ILS(ph)DVTHSAVFGVPASK ddPTM_HeLa_A485_30min_R1 3 ILSDVTHSAVFGVPASK 17 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 ILS(0.995)DVT(0.005)HSAVFGVPASK;ILS(0.999)DVT(0.001)HSAVFGVPASK;ILS(0.758)DVT(0.234)HS(0.008)AVFGVPASK ;; 203.26 2.96E-25 3738265000 1458772 1252895 923542 2114309 1701662 1595157 2251606 2233158 1248454 2991825 TRUE FALSE FALSE 1783270.799 1399410.172 1265198.618 2229808.347 1532238.556 1678676.954 1770531.984 1685472.499 1499007.266 2246018.088 0.793969919 0.623062734 0.563307404 0.992782898 0.682202234 0.747401351 0.788298186 0.750426948 0.667406587 1 21.09893812 -11.11646253 2.519110835 1.521709473 0.734531074 0.341454926 0.110690085 8752893.907 2575786.639 26184554.09 0.028196465 7.65E-12 11.11646253 -0.787178398 ILS(ph)DVTHSAVFGVPASK ddPTM_HeLa_A486_30min_R1 3 ILSDVTHSAVFGVPASK 17 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 ILS(0.999)DVT(0.001)HSAVFGVPASK;ILS(0.961)DVT(0.038)HSAVFGVPASK;ILS(0.996)DVT(0.003)HSAVFGVPASK ;; 257.6 1.80E-51 3926240000 2741330 3266720 1810260 1426228 3097160 3611370 4455390 4130110 2837730 4224840 TRUE FALSE FALSE 2549176.923 3007853.21 2511241.152 3320330.862 2708685.313 3165835.887 3340604.298 3189774.113 3083706.721 3166912.565 0.804940734 0.94977463 0.792961947 1.048444121 0.855307893 0.999660023 1.054845762 1.007218876 0.973726511 1 21.59464561 -5.364909328 0.649821972 1.012153278 0.827692296 0.419051807 0.069914735 1.125440919 0.844563897 0.039707601 0.12888466 4.32E-06 5.364909328 -0.184460981 ILS(ph)PDSFIK ddPTM_HeLa_A485_30min_R1 2 ILSPDSFIK 9 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 ILS(1)PDSFIK;ILS(0.999)PDS(0.001)FIK ; 134.75 0.00019489 28890000 114158 87707 72076 167418 120726 83613 110470 96492 91124 201371 TRUE FALSE FALSE 139552.0533 97963.5707 98739.91173 176563.6214 108706.0955 87990.84739 86867.18204 72827.18571 109411.751 151172.9157 0.923128675 0.648023294 0.653158744 1.167958034 0.719084467 0.582054312 0.574621331 0.481747576 0.723752337 1 17.20584016 -5.994213888 24.99796256 0.635779654 0.835314404 0.147977525 0.18904234 257.2615591 1111445.164 0.058332083 0.065955671 1.01E-06 5.994213888 0.19953475 ILS(ph)PDSFIK ddPTM_HeLa_A486_30min_R1 1 ILSPDSFIK 9 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 ILS(0.999)PDS(0.001)FIK 128.01 0.00026766 11991000 66655 81470 42067 28653 56822 85543 79449 71872 66415 80554 TRUE FALSE FALSE 61982.82871 75014.02049 58356.46899 66705.63204 49694.85492 74989.5744 59570.01987 55508.31455 72171.90567 60382.75408 1.026498868 1.242308696 0.966442652 1.104713309 0.822997488 1.241903844 0.986540293 0.919274309 1.195240376 1 15.88184894 -4.777636303 24.99553744 1.028098795 1.134403872 0.09714526 0.127684425 468.7393237 723372.9543 0.03153022 0.065954267 1.67E-05 4.777636303 0.106305078 ILS(ph)PSMASK ddPTM_HeLa_A485_30min_R1 6 ILSPSMASK 9 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 ILS(0.993)PS(0.007)MASK;ILS(0.953)PS(0.047)MASK;ILS(0.957)PS(0.043)MASK;ILS(0.958)PS(0.042)MASK;ILS(0.992)PS(0.008)MASK;ILS(0.998)PS(0.002)MASK ;;;;; 150.21 7.12E-05 2969720000 4157640 4049440 3344910 4266710 5526280 4429430 5590770 5827680 3570580 5450870 TRUE FALSE FALSE 5082492.674 4522986.783 4582331.402 4499789.563 4976064.159 4661348.106 4396256.317 4398432.343 4287162.655 4092068.425 1.242035114 1.105305756 1.119808108 1.099636931 1.216026626 1.13911783 1.074335974 1.074867741 1.04767619 1 21.96439884 -7.35099283 0.916429601 1.00845161 1.15184848 0.582122241 0.044881128 0.439939169 0.672093795 0.04182436 0.01686995 4.46E-08 7.35099283 0.14339687 ILS(ph)PSMASK ddPTM_HeLa_A486_30min_R1 6 ILSPSMASK 9 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 ILS(0.956)PS(0.044)MASK;ILS(0.974)PS(0.026)MASK;ILS(0.982)PS(0.018)MASK;ILS(0.733)PS(0.267)MASK;ILS(0.928)PS(0.072)MASK;ILS(1)PSMASK ;;;;; 141.89 0.00012005 2664818000 5887294 6020829 3846727 2318085 6478274 6241754 7172017 7056766 4457162 6653002 TRUE FALSE FALSE 5474625.093 5543716.583 5336282.713 5396619.03 5665708.467 5471709.853 5377502.489 5450094.43 4843512.391 4987046.995 1.0977689 1.111623088 1.07002856 1.082127166 1.136084836 1.097184337 1.078293927 1.092850024 0.971218518 1 22.24975437 -7.755919269 24.93788558 0.985609237 1.09577416 0.848715073 0.018599679 41.96339227 189582.3462 0.013826883 0.004892578 1.75E-08 7.755919269 0.110164923 ILSDVTHS(ph)AVFGVPASK ddPTM_HeLa_A485_30min_R1 1 ILSDVTHSAVFGVPASK 17 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 ILS(0.178)DVT(0.292)HS(0.53)AVFGVPASK 110.77 0.0001128 3258600000 477090 403390 299240 668790 611300 450150 757760 739450 412840 925250 TRUE FALSE FALSE 583217.0246 450562.9515 409941.3284 705324.3042 550436.8256 473719.1579 595858.3857 558098.7281 495693.2012 694602.203 0.839641772 0.648663292 0.59018144 1.015436319 0.792449006 0.682000656 0.857841198 0.80347964 0.713636091 1 19.40582746 -14 0.281836772 2.673487394 0.757097391 0.254486092 0.115644083 340.7460553 3.260928695 334.1796072 0.135282484 1.00E-14 14 -1.916390002 ILSLSEEGS(ph)LER ddPTM_HeLa_A485_30min_R1 2 ILSLSEEGSLER 12 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 ILSLSEEGS(1)LER;ILSLS(0.001)EEGS(0.999)LER ; 159.58 4.96E-09 55821000 78978 96537 95669 70189 113698 81410 105279 107600 87161 85104 TRUE FALSE FALSE 96546.38363 107826.1624 131060.9442 74023.24734 102377.8279 85672.50172 82785.2816 81210.93129 104653.4132 63889.13902 1.511154871 1.687707238 2.051380661 1.158620205 1.602429293 1.340955646 1.295764552 1.271122644 1.638047011 1 15.96328308 -5.271913623 24.99487309 1.351295427 1.743843568 0.44050409 0.216175779 651.0365492 1553578.988 0.058800671 0.088265495 5.35E-06 5.271913623 0.39254814 ILSLSEEGS(ph)LER ddPTM_HeLa_A486_30min_R1 2 ILSLSEEGSLER 12 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 ILSLSEEGS(1)LER;ILSLS(0.004)EEGS(0.996)LER ; 115.57 0.000266 51805000 65706 68315 60755 23984 81445 62758 72172 73639 56737 67242 TRUE FALSE FALSE 61100.34871 62901.4706 84280.96308 55835.96408 71229.40866 55015.55604 54113.80224 56873.00723 61655.00884 50404.16553 1.212208318 1.24794191 1.672103133 1.107764874 1.413165121 1.091488282 1.07359782 1.128339427 1.22321257 1 15.62125535 -6.271650774 24.4916765 1.109490705 1.33263111 0.368659438 0.148611664 614.8893473 1474786.5 0.051335966 0.04579995 5.35E-07 6.271650774 0.223140405 ILSQS(ph)TDSLNMR ddPTM_HeLa_A486_30min_R1 2 ILSQSTDSLNMR 12 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ILSQS(0.989)T(0.011)DSLNMR;ILSQS(0.988)T(0.012)DSLNMR ; 333.15 3.33E-73 3460800000 1459100 1674600 1459140 499620 1857360 1253730 1391510 1423480 1471120 1429860 TRUE FALSE FALSE 1356824.625 1541898.597 2024158.085 1163140.609 1624392.59 1099057.54 1043339.48 1099384.678 1598637.866 1071813.749 1.265914555 1.438588186 1.888535286 1.085207771 1.515554909 1.0254184 0.973433566 1.02572362 1.491525806 1 20.0316228 -6.261455443 25 1.096716328 1.444096305 0.336712749 0.235321694 1.752889279 2725355.518 0.0805125 0.07562774 5.48E-07 6.261455443 0.347379977 ILTFDQLALDS(ph)PKGCGTVLLSGPR ddPTM_HeLa_A485_30min_R1 1 ILTFDQLALDSPKGCGTVLLSGPR 24 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;G3V203 F8VUA6 RPL18 60S ribosomal protein L18 1 0 ILT(0.002)FDQLALDS(0.904)PKGCGT(0.092)VLLS(0.002)GPR 46.839 0.024065 94462000 20736 29054 21537 27608 49719 36333 49022 69622 24278 55819 TRUE FALSE FALSE 25348.65166 32451.61256 29504.43253 29116.15513 44768.80179 38235.3397 38548.04923 52547.09534 29150.37191 41904.35057 0.604916943 0.774421083 0.70408996 0.694824159 1.068356893 0.912443199 0.919905659 1.253977084 0.695640703 1 15.35481241 -5.751212045 24.99504074 0.981864827 0.700947599 0.501696309 0.136786344 168.1010844 410827.8295 0.03838206 0.04898087 1.77E-06 5.751212045 -0.280917228 ILTFDQLALDS(ph)PKGCGTVLLSGPR ddPTM_HeLa_A486_30min_R1 1 ILTFDQLALDSPKGCGTVLLSGPR 24 1 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;G3V203 F8VUA6 RPL18 60S ribosomal protein L18 1 0 ILTFDQLALDS(0.999)PKGCGT(0.001)VLLSGPR 117.73 5.63E-05 64115000 29120 29014 17321 28886 51041 33323 59407 53335 21055 49081 TRUE FALSE FALSE 27078.83838 26714.82497 24028.15507 67248.06782 44638.96184 29211.94706 44542.74026 41191.78479 22880.06435 36790.79814 0.736022042 0.7261279 0.653102305 1.827850202 1.213318659 0.79400145 1.210703288 1.11962194 0.621896385 1 15.16705735 ILTFDQLALDSPK ddPTM_HeLa_A485_30min_R1 1 ILTFDQLALDSPK 13 0 F8VUA6;H0YHA7;J3QQ67;Q07020-2;Q07020;G3V203 F8VUA6 RPL18 60S ribosomal protein L18 0 0 202.44 1.34E-21 0 34796 35915 29842 40198 45184 42416 52394 59094 32818 57384 FALSE FALSE TRUE 42536.25016 40114.94683 40881.79763 42393.91495 40685.32231 44636.83617 41199.59388 44601.10384 39404.27158 43079.22487 0.987395903 0.931190079 0.948991022 0.98409187 0.944430231 1.036156902 0.956368041 1.035327446 0.914693142 1 15.39470467 ILTFLETYLASGHQKPLPTVPGGLSPVQR ddPTM_HeLa_A486_30min_R1 1 ILTFLETYLASGHQKPLPTVPGGLSPVQR 29 1 E9PJ55;Q9NUJ3;H0YES4 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 0 0 57.21 0.01447 2481200 2191 1810 1548.5 425.54 2368.4 2280.3 1666.7 2249.6 1199.2 2035.4 FALSE FALSE TRUE 2037.422214 1666.569008 2148.12067 990.6786256 2071.333188 1998.97977 1249.674031 1737.415188 1303.147622 1525.722592 1.335381822 1.092314564 1.407936595 0.649317662 1.357607994 1.310185601 0.819070281 1.138749074 0.854118323 1 10.57527696 -1.000000016 0.205440125 0.952769621 2.582989457 0.150787362 0.228475437 109.792184 1.34757615 0.397065877 58.11268479 0.099999996 1.000000016 1.630219836 ILVATNLFGR ddPTM_HeLa_A485_30min_R1 2 ILVATNLFGR 10 0 O00148;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 112.8 0.0089183 463540000 67284 87428 97794 70727 110156 75173 97067 102421 73907 110039 FALSE FALSE TRUE 82251.09367 97651.94408 133972.0701 74590.63692 99188.48186 79108.94204 76327.84249 77302.08916 88739.45698 82608.30242 0.995675874 1.182108108 1.621774885 0.902943587 1.200708391 0.95763912 0.923973018 0.935766586 1.074219593 1 16.33399916 -5.363068219 22.732948 1.00015866 1.258994504 0.353561341 0.165464213 20.14696812 4497.980357 0.047026779 0.069751999 4.33E-06 5.363068219 0.258835845 ILVATNLFGR ddPTM_HeLa_A486_30min_R1 2 ILVATNLFGR 10 0 O00148;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 211.85 1.91E-19 463840000 314010 404080 360290 109142 431070 332930 370960 362270 356660 329820 FALSE FALSE TRUE 291999.5205 372059.2292 499803.9369 254088.0917 377001.181 291856.4816 278141.8844 279789.0293 387575.576 247230.9252 1.181080078 1.504905702 2.021607679 1.027735877 1.524894916 1.180501514 1.125028692 1.131691066 1.567666244 1 17.91549969 -5.296702338 24.99178865 1.234777985 1.56276929 0.270323055 0.260414122 807.8812778 572565.1148 0.072681321 0.10780892 5.05E-06 5.296702338 0.327991304 ILVGELLTSQPEVDERPCRT(ph)PPLQQS(ph)PSVIR ddPTM_HeLa_A485_30min_R1 3 ILVGELLTSQPEVDERPCRTPPLQQSPSVIR 31 2 H0YDE6;Q6IQ26-2;Q6IQ26 H0YDE6 DENND5A DENN domain-containing protein 5A 2 0 ILVGELLTSQPEVDERPCRT(1)PPLQQS(0.885)PS(0.115)VIR;ILVGELLTSQPEVDERPCRT(1)PPLQQS(0.961)PS(0.039)VIR;ILVGELLTSQPEVDERPCRT(0.998)PPLQQS(0.574)PS(0.429)VIR ;; 122.88 2.12E-05 624370000 115470 140032 176337 150776 196244 140868 164267 173985 168480 175046 TRUE FALSE FALSE 141155.9031 156407.5243 241571.3943 159012.5111 176705.2583 148243.6307 129170.0135 131314.906 202292.3906 131410.2537 1.074162017 1.190223136 1.838299429 1.210046451 1.344683945 1.128097896 0.982952318 0.999274427 1.539395785 1 17.00371833 -6.265929649 6.494705686 1.120090733 1.345509117 0.146647096 0.241370951 0.284845799 65.90794607 0.085041372 0.079151642 5.42E-07 6.265929649 0.225418384 ILVGELLTSQPEVDERPCRT(ph)PPLQQS(ph)PSVIR ddPTM_HeLa_A486_30min_R1 2 ILVGELLTSQPEVDERPCRTPPLQQSPSVIR 31 2 H0YDE6;Q6IQ26-2;Q6IQ26 H0YDE6 DENND5A DENN domain-containing protein 5A 2 0 ILVGELLTSQPEVDERPCRT(1)PPLQQS(0.904)PS(0.096)VIR;ILVGELLTSQPEVDERPCRT(1)PPLQQS(0.968)PS(0.032)VIR ; 227.5 1.91E-38 887770000 245810 349170 316616 107149 417700 314086 384630 347090 325946 312873 TRUE FALSE FALSE 228579.9884 321500.4975 439218.1945 249448.287 365308.1711 275337.2627 288391.5058 268065.1839 354199.2617 234527.5643 0.974640184 1.370843118 1.872778561 1.063620337 1.557634268 1.174008111 1.229669982 1.143000758 1.510267088 1 17.83939797 -6.302775575 24.97989327 1.221469264 1.379210817 0.081228997 0.260714173 1406.835712 850161.1963 0.090716966 0.080005588 4.98E-07 6.302775575 0.157741553 ILVGELLTSQPEVDERPCRT(ph)PPLQQSPSVIR ddPTM_HeLa_A486_30min_R1 1 ILVGELLTSQPEVDERPCRTPPLQQSPSVIR 31 2 H0YDE6;Q6IQ26-2;Q6IQ26 H0YDE6 DENND5A DENN domain-containing protein 5A 1 0 ILVGELLTSQPEVDERPCRT(0.999)PPLQQSPSVIR 85.412 0.00039058 257780000 34303 42103 41107 15120 51622 40953 45796 47923 36503 39881 TRUE FALSE FALSE 31898.53684 38766.60494 57024.73128 35200.12412 45147.0874 35900.63524 34337.35642 37011.97905 39667.10943 29894.53802 1.067035618 1.29677886 1.907530106 1.177476772 1.510211911 1.200909518 1.148616393 1.238084998 1.32690157 1 14.8675943 -6.287085885 20.48035795 1.195639514 1.403271321 0.176950831 0.223749105 151.5093579 120987.4582 0.07951025 0.070187753 5.16E-07 6.287085885 0.207631807 ILVTLLHTLER ddPTM_HeLa_A485_30min_R1 2 ILVTLLHTLER 11 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 "Acetyl-CoA acetyltransferase, cytosolic" 0 0 ; ; 194.17 3.26E-14 57863000 30297 32894 36186 28056 42978 39705 47077 54162 30113 44265 FALSE FALSE TRUE 37036.46313 36740.66716 49572.70723 29588.62824 38698.95942 41783.8924 37018.61437 40878.68458 36156.40289 33230.55014 1.114530544 1.105629218 1.491781118 0.890404405 1.164559697 1.257393941 1.113993425 1.230153711 1.088047075 1 15.02022256 -8.004022832 5.830132016 1.000081519 1.170659089 0.127281265 0.142612769 0.264172454 41.14026706 0.132623899 0.034442797 9.91E-09 8.004022832 0.17057757 ILVTLLHTLER ddPTM_HeLa_A486_30min_R1 2 ILVTLLHTLER 11 0 Q9BWD1;Q9BWD1-2 Q9BWD1 ACAT2 "Acetyl-CoA acetyltransferase, cytosolic" 0 0 ; ; 174.4 1.33E-07 52812000 49060 62258 53280 14257.8 73259 62056 67368 69108 62285 65037 FALSE FALSE TRUE 45621.14735 57324.44934 73911.44289 33192.87895 64070.17311 54400.16166 50511.81385 53373.61702 67683.91395 48751.31188 0.935793225 1.175854498 1.516091363 0.680861246 1.314224595 1.115870723 1.036111889 1.094813964 1.388350617 1 15.57315342 ILVVNAAYFVGK ddPTM_HeLa_A485_30min_R1 2 ILVVNAAYFVGK 12 0 P36952;P36952-2 P36952 SERPINB5 Serpin B5 0 0 ; ; 242.93 4.35E-29 42609000 65680 56882 52118 68406 76526 87601 104174 109643 39174 91688 FALSE FALSE TRUE 80290.28941 63533.85509 71398.61701 72142.84657 68906.80274 92187.6529 81916.37388 82752.88234 47035.86247 68831.86899 1.166469698 0.923029638 1.037290111 1.048102392 1.001088649 1.339316428 1.190093703 1.202246627 0.683344258 1 16.07078906 -7.752836237 24.99992145 0.841672095 1.108727762 0.400208452 0.132987134 173.7529784 504920.082 0.096628846 0.035250813 1.77E-08 7.752836237 0.267055667 ILVVNAAYFVGK ddPTM_HeLa_A486_30min_R1 2 ILVVNAAYFVGK 12 0 P36952;P36952-2 P36952 SERPINB5 Serpin B5 0 0 ; ; 242.93 4.35E-29 39016000 57387 70581 67362 32436 91915 88676 102864 90047 76466 101218 FALSE FALSE TRUE 53364.46765 64987.90451 93446.37042 75512.64722 80386.16363 77736.05671 77126.33922 69545.26381 83094.13445 75872.35398 0.703345354 0.856542615 1.231626087 0.995259054 1.059492152 1.02456366 1.016527565 0.916608754 1.095183293 1 16.21128668 -4.542205751 9.95575558 1.03739615 0.741253299 0.662259975 0.078330819 0.142164284 70.61675444 0.019561177 0.052975716 2.87E-05 4.542205751 -0.296142852 ILWFIPFR ddPTM_HeLa_A485_30min_R1 1 ILWFIPFR 8 0 Q8IVQ6 Q8IVQ6 ZDHHC21 Palmitoyltransferase ZDHHC21 0 0 119.7 0.0052677 4119700 4695.3 6053.4 5450.8 4230.9 6806.2 4824.3 6694.8 4688 3722.2 7433.5 FALSE FALSE TRUE 5739.753286 6761.292472 7467.277747 4462.023354 6128.55083 5076.892888 5264.401289 3538.26065 4469.211398 5580.465253 1.028543863 1.211600138 1.338110248 0.799579094 1.098215033 0.90976158 0.943362435 0.634044025 0.800867167 1 12.44616969 -5.960176018 0.853236523 0.809740945 1.175716868 0.401542453 0.152594598 0.575576768 0.923299979 0.08666704 0.113059291 1.10E-06 5.960176018 0.365975923 ILWFIPFR ddPTM_HeLa_A486_30min_R1 2 ILWFIPFR 8 0 Q8IVQ6 Q8IVQ6 ZDHHC21 Palmitoyltransferase ZDHHC21 0 0 ; ; 119.7 0.0052677 5943300 6575.7 7887.4 6575.3 2998.1 8773.4 6546.7 8335.3 6246.6 7846.3 8396.3 FALSE FALSE TRUE 6114.777387 7262.373699 9121.432253 6979.728316 7672.958363 5739.034716 6249.719778 4824.385542 8526.423602 6293.811829 0.971553893 1.153891139 1.449269934 1.108982681 1.219127386 0.911853559 0.99299438 0.766528405 1.354731256 1 12.61971833 -6.252579957 24.45174633 0.989865349 1.19003439 0.193857201 0.17687956 730.3249567 2015676.974 0.05786078 0.056989797 5.59E-07 6.252579957 0.200169041 ILYYIFTK ddPTM_HeLa_A485_30min_R1 1 ILYYIFTK 8 0 A0A0G2JNN3;C9JMY0;A0A087WUE4;Q96PV6-1;Q96PV6 A0A0G2JNN3 LENG8 Leukocyte receptor cluster member 8 0 0 130.34 0.0027346 5438400 14178 14294 13353 12778 20323 12524 15027 14865 10692 16030 FALSE FALSE TRUE 17331.84719 15965.55896 18292.83036 13476.02978 18299.57076 13179.73727 11816.35869 11219.33544 12837.78633 12034.01601 1.440238003 1.326702486 1.520093571 1.119828142 1.520653683 1.095206892 0.98191316 0.932301854 1.066791528 1 13.55483056 -6.431962391 4.746565319 0.994624556 1.373813994 0.737251077 0.111530872 0.113127021 4.295011814 0.038463498 0.033289999 3.70E-07 6.431962391 0.379189438 ILYYIFTK ddPTM_HeLa_A486_30min_R1 2 ILYYIFTK 8 0 A0A0G2JNN3;C9JMY0;A0A087WUE4;Q96PV6-1;Q96PV6 A0A0G2JNN3 LENG8 Leukocyte receptor cluster member 8 0 0 ; ; 146.35 0.00065837 9377200 28559 32044 25438 10640.2 32447 28603 34234 31562 29237 33298 FALSE FALSE TRUE 26557.16158 29504.71674 35288.27485 24770.92333 28377.1947 25074.25267 25668.29111 24376.02159 31771.2867 24959.96407 1.063990377 1.182081699 1.413795098 0.992426241 1.136908476 1.004578877 1.028378528 0.976604835 1.272889921 1 14.60732824 -5.303318866 24.99997106 1.0575763 1.216168781 0.289297532 0.115675041 600.6234081 358541.1235 0.032094147 0.047603798 4.97E-06 5.303318866 0.158592481 IMAT(ph)PEQVGK ddPTM_HeLa_A485_30min_R1 5 IMATPEQVGK 10 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK ;;;; 198.32 5.20E-13 2696810000 4319590 4526650 3753390 5222460 5685030 5311100 6804320 7702220 4036780 6842370 TRUE FALSE FALSE 5280467.893 5056002.341 5141925.153 5507749.766 5119008.452 5589180.983 5350521.446 5813238.468 4846924.718 5136693.083 1.027989761 0.984291305 1.001018568 1.072236491 0.996557195 1.088089339 1.041627631 1.131708353 0.943588538 1 22.29240844 -5.235235674 23.37650039 1.044975214 1.002418996 0.081078666 0.050760832 688.7571098 614441.4066 0.01295464 0.022422616 5.82E-06 5.235235674 -0.042556219 IMAT(ph)PEQVGK ddPTM_HeLa_A486_30min_R1 9 IMATPEQVGK 10 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK ;;;;;;;; 176.32 3.52E-07 3027778000 8149850 9004720 5655410 3372590 8860780 8922720 10890920 10625360 7115430 9647790 TRUE FALSE FALSE 7578587.601 8291153.193 7845336.209 7851559.961 7749378.349 7821925.526 8165896.624 8206197.478 7732201.201 7231920.587 1.047935678 1.146466294 1.084820569 1.085681164 1.071551914 1.081583437 1.129146335 1.13471897 1.069176729 1 22.78594741 -11.96063355 1.047042618 0.019973441 1.096693074 0.464558294 0.030383487 28002.80245 835.6510194 64355.06848 0.009107395 1.09E-12 11.96063355 1.076719633 IMATPEQVGK(ac)MK ddPTM_HeLa_A485_30min_R1 3 IMATPEQVGKMK 12 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 1 ;; IMATPEQVGK(1)MK;IMATPEQVGK(1)MK;IMATPEQVGK(1)MK 214.82 6.11E-20 153275000 199643 233097 215898 213422 313503 273287 333558 369763 230902 323932 FALSE TRUE FALSE 244052.8966 260355.6665 295767.6545 225080.7034 282289.5405 287595.8847 262290.6084 279078.0445 277241.9134 243181.7139 1.003582435 1.070621891 1.216241344 0.925565906 1.1608173 1.18263779 1.078578665 1.147611142 1.140060694 1 17.89167522 IMATPEQVGK(ac)MK ddPTM_HeLa_A486_30min_R1 2 IMATPEQVGKMK 12 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 1 ; IMATPEQVGK(1)MK;IMATPEQVGK(1)MK 214.82 6.11E-20 156854000 191373 230215 158490 76331 251639 237764 255334 254264 187518 248325 FALSE TRUE FALSE 177958.741 211971.925 219861.5725 177702.4256 220076.0902 208431.0951 191446.7326 196373.6377 203772.2112 186142.8037 0.956033419 1.138759709 1.181144628 0.954656436 1.182297064 1.119737594 1.02849387 1.054962286 1.094709047 1 17.50605032 -9.118550178 0.52720653 0.991746186 1.086937117 0.079751711 0.077877906 13.35423847 4.166273941 0.31610885 0.036395856 7.61E-10 9.118550178 0.095190931 IMDPNIVGSEHYDVAR ddPTM_HeLa_A485_30min_R1 1 IMDPNIVGSEHYDVAR 16 0 P06576;H0YH81 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 110.37 0.00021512 0 50830 79206 90099 61226 95543 68524 66616 87960 73981 82169 FALSE FALSE TRUE 62136.95814 88468.4527 123430.3694 64570.62135 86030.40345 72111.81068 52382.9474 66387.67208 88828.30811 61685.78051 1.007314127 1.434179027 2.000953354 1.046766707 1.394655344 1.169018372 0.849189991 1.076223265 1.440012712 1 15.91265034 -5.950170406 1.583633094 1.098920989 1.441941607 0.173137446 0.289603851 0.644111147 3.312443973 0.115876217 0.134000623 1.12E-06 5.950170406 0.343020618 IMDPNIVGSEHYDVAR ddPTM_HeLa_A486_30min_R1 2 IMDPNIVGSEHYDVAR 16 0 P06576;H0YH81 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ; ; 135.28 3.05E-05 192490000 146476 175688 160185 35453 241378 156629 154814 165804 185616 144252 FALSE FALSE TRUE 136208.7888 161765.843 222212.9219 82536.3757 211102.1205 137305.7065 116077.8997 128054.0487 201705.3443 108130.3603 1.259672015 1.496026117 2.055046532 0.763304362 1.952292769 1.269816415 1.073499611 1.184256192 1.865390477 1 16.72241213 IMGPNYT(ph)PGKKEDLYLKPIQR ddPTM_HeLa_A485_30min_R1 1 IMGPNYTPGKKEDLYLKPIQR 21 3 P13639 P13639 EEF2 Elongation factor 2 1 0 IMGPNYT(1)PGKKEDLYLKPIQR 110.03 3.45E-05 931220000 839360 650980 378340 1370600 1195100 956790 1700000 1743700 685220 1806200 TRUE FALSE FALSE 1026072.736 727106.4482 518303.71 1445472.407 1076111.648 1006886.045 1336781.112 1316054.841 822737.3688 1355947.581 0.756720061 0.536234924 0.382244651 1.066023811 0.79362334 0.742570037 0.98586489 0.970579438 0.606761928 1 20.37086998 -5.259522097 24.99572785 0.874537834 0.556183387 0.475352044 0.155099832 150.2380584 1958650.526 0.042392686 0.068933674 5.50E-06 5.259522097 -0.318354447 IMGPNYT(ph)PGKKEDLYLKPIQR ddPTM_HeLa_A486_30min_R1 1 IMGPNYTPGKKEDLYLKPIQR 21 3 P13639 P13639 EEF2 Elongation factor 2 1 0 IMGPNYT(1)PGKKEDLYLKPIQR 118.57 3.84E-05 561440000 630010 544220 211480 390820 512410 658280 1047300 930080 390000 1014900 TRUE FALSE FALSE 585849.5524 501094.0252 293370.7196 909848.7109 448138.7598 577068.1065 785254.4628 718321.0875 423805.514 760762.4341 0.770082126 0.658673461 0.385627242 1.195969557 0.589065311 0.758539172 1.032194056 0.944212089 0.55707997 1 19.53708648 -5.243857493 24.99144724 0.856466325 0.610182238 0.254535383 0.205794451 1243.094725 1766971.364 0.054975206 0.094952306 5.70E-06 5.243857493 -0.246284087 IMILFR ddPTM_HeLa_A485_30min_R1 3 IMILFR 6 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 0 ;; ;; 142.14 0.012902 60224000 60440 72033 74156 65840 87415 70765 91004 107572 66297 84011 FALSE FALSE TRUE 73884.66948 80456.63275 101589.3903 69436.67248 78711.65567 74470.14598 71560.25197 81189.79833 79602.19979 63068.60381 1.171496831 1.275700236 1.610775951 1.100970503 1.248032316 1.18078 1.134641448 1.287325126 1.262152561 1 15.94463438 IMILFR ddPTM_HeLa_A486_30min_R1 1 IMILFR 6 0 Q13619;A0A0A0MR50;Q13619-2 Q13619 CUL4A Cullin-4A 0 0 109.53 0.032372 27532000 13155 13266 11614 16272 18454 18266 22884 20963 12871 32421 FALSE FALSE TRUE 12232.90243 12214.75385 16111.25183 37882.03834 16139.32724 16012.52664 17158.18116 16190.18252 13986.66864 24302.57057 0.503358375 0.502611599 0.662944349 1.558766725 0.664099594 0.658882014 0.706023303 0.666192182 0.57552219 1 14.5688213 -5.002361526 24.92733763 0.823283293 0.522933074 0.195446853 0.269284445 164.9467238 1741195.34 0.074632785 0.151292893 9.95E-06 5.002361526 -0.300350219 IMNMIEEIKTPASTPVS(ph)GTPQAS(ph)PMIER ddPTM_HeLa_A486_30min_R1 1 IMNMIEEIKTPASTPVSGTPQASPMIER 28 1 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 IMNMIEEIKTPAST(0.001)PVS(0.879)GT(0.12)PQAS(1)PMIER 170.74 4.75E-14 81247000 58353 47718 37745 32481 87748 56130 81335 89546 40996 77212 TRUE FALSE FALSE 54262.75604 43936.65189 52360.87485 75617.4095 76741.82762 49205.25129 60984.12273 69158.33058 44549.56629 57877.61263 0.937543094 0.759130342 0.9046827 1.306505332 1.325932846 0.850160348 1.053673777 1.194906414 0.769720178 1 15.82071779 -5.01950787 23.98569839 1.082252256 0.844229111 0.230413192 0.172463053 587.1119957 721880.7095 0.047475889 0.083949792 9.56E-06 5.01950787 -0.238023145 IMNMIEEIKTPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_HeLa_A485_30min_R1 1 IMNMIEEIKTPASTPVSGTPQASPMIER 28 1 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 IMNMIEEIKTPAST(0.001)PVS(0.434)GT(0.565)PQAS(0.999)PMIER 95.205 0.0015753 164120000 94527 157340 124070 83501 215580 236460 334020 476660 137410 160350 TRUE FALSE FALSE 115554.205 175739.5443 169968.656 88062.44819 194116.0983 248840.68 262653.8983 359758.3876 164986.9266 120377.696 0.95993036 1.459901212 1.411961365 0.731551202 1.612558677 2.067165997 2.181914981 2.988580107 1.370577209 1 16.87720858 -6.04129826 4.037277398 2.053909903 1.178467755 0.303985665 0.534979968 0.240028043 8.366102243 0.173813903 0.181745648 9.09E-07 6.04129826 -0.875442147 IMNMIEEIKTPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_HeLa_A486_30min_R1 1 IMNMIEEIKTPASTPVSGTPQASPMIER 28 1 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 IMNMIEEIKTPASTPVS(0.446)GT(0.553)PQAS(1)PMIER 105.24 0.0003585 76897000 13534 12039 9986.9 7423.1 19798 13365 20918 21126 8758.1 15284 TRUE FALSE FALSE 12585.33649 11084.98579 13854.09514 17281.35194 17314.75023 11716.16219 15684.09515 16316.07098 9517.25916 11456.78692 1.098504893 0.967547522 1.209247867 1.508394288 1.511309441 1.022639442 1.368978516 1.424140214 0.830709275 1 13.48391487 -10.41296411 3.556050318 0.998121443 1.230490343 0.073550316 0.224233459 161062503.3 170642946 2899661.562 0.057620918 3.86E-11 10.41296411 0.2323689 IMNMIEEIKTPASTPVSGTPQAS(ph)PMIER ddPTM_HeLa_A485_30min_R1 1 IMNMIEEIKTPASTPVSGTPQASPMIER 28 1 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 IMNMIEEIKTPAST(0.002)PVS(0.136)GT(0.098)PQAS(0.764)PMIER 70.525 0.0036668 81129000 19440 37808 27709 22888 44573 50006 67181 92734 33432 39665 TRUE FALSE FALSE 23764.36093 42229.31671 37959.71217 24138.31348 40135.15561 52624.23684 52827.23053 69990.8411 40141.49574 29777.24548 0.798071163 1.418174046 1.274789241 0.810629496 1.347846484 1.767263425 1.774080499 2.35048071 1.348059402 1 14.86192268 -6.105436786 3.793389544 1.738614322 1.110183864 0.327603029 0.372906331 0.251298343 6.493468091 0.122993917 0.124896718 7.84E-07 6.105436786 -0.628430458 IMNTFSVVPSPK ddPTM_HeLa_A485_30min_R1 3 IMNTFSVVPSPK 12 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;A0A0B4J269;Q13509;Q13509-2;G3V2A3;P04350;M0QYM7;M0R042 Q5JP53;P68371;A0A0B4J269;P04350 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain 0 0 ;; ;; 248.42 2.87E-30 201417000 363130 385783 331582 378562 489710 450584 550920 605510 361948 537790 FALSE FALSE TRUE 443907.0157 430896.966 454247.9801 399241.8835 440952.7529 474175.8815 433211.4414 457007.7231 434587.6436 403728.8503 1.099517697 1.067292976 1.125131334 0.988886187 1.092200254 1.174490951 1.073025723 1.131966969 1.076434452 1 18.62302716 -3.200780725 14.88401236 1.087221644 1.085319336 0 0.054058965 0 0 0.012017639 0 0.000629824 3.200780725 -0.001902308 IMNTFSVVPSPK ddPTM_HeLa_A486_30min_R1 2 IMNTFSVVPSPK 12 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;A0A0B4J269;Q13509;Q13509-2;G3V2A3;P04350;M0QYM7;M0R042 Q5JP53;P68371;A0A0B4J269;P04350 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain 0 0 ; ; 147.37 0.00038028 26435000 80121 86583 59734 43896 95987 94532 98913 104157 73324 118477 FALSE FALSE TRUE 74504.93165 79721.84775 82864.60453 102192.1064 83947.41542 82869.60297 74163.9212 80442.72483 79679.78336 88809.58804 0.838928918 0.897671631 0.933059215 1.150687765 0.945251715 0.933115498 0.835089125 0.90578874 0.897197984 1 16.43842782 -6.52845851 24.72151492 0.899158636 0.957829186 0.049975721 0.083692333 355.70043 1575927.785 0.033824779 0.026285325 2.96E-07 6.52845851 0.05867055 IMPDS(ph)NDSPPAEREPGEVVDSLVGK ddPTM_HeLa_A485_30min_R1 2 IMPDSNDSPPAEREPGEVVDSLVGK 25 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IMPDS(0.8)NDS(0.2)PPAEREPGEVVDSLVGK;IMPDS(0.55)NDS(0.45)PPAEREPGEVVDSLVGK ; 90.123 0.0045133 176536000 281353 269367 241528 322046 357867 343928 442070 519290 257838 471240 TRUE FALSE FALSE 343939.0042 300867.1275 330879.258 339638.5575 322236.5049 361935.5383 347618.1331 391933.3133 309583.7216 353768.5405 0.972214781 0.850463207 0.935298706 0.960058679 0.910868175 1.023085709 0.9826146 1.107880629 0.875102464 1 18.43244623 -6.258633272 24.93114188 1.003534091 0.924029511 0.253652021 0.061275936 309.6305957 2750954.351 0.019661592 0.018819057 5.51E-07 6.258633272 -0.07950458 IMPDSNDS(ph)PPAEREPGEVVDSLVGK ddPTM_HeLa_A485_30min_R1 7 IMPDSNDSPPAEREPGEVVDSLVGK 25 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IMPDS(0.009)NDS(0.991)PPAEREPGEVVDSLVGK;IMPDS(0.217)NDS(0.783)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDS(0.186)NDS(0.814)PPAEREPGEVVDSLVGK ;;;;;; 228.53 8.79E-39 2138380000 1497090 1472473 1284054 1705709 1995037 1899700 2514328 2708629 1469070 2441226 TRUE FALSE FALSE 1830112.506 1644665.909 1759079.009 1798887.564 1796404.111 1999165.355 1977121.283 2044333.491 1763898.874 1832673.286 0.998602708 0.897413588 0.95984321 0.981564787 0.980209689 1.090846563 1.078818193 1.115492601 0.962473174 1 20.80551819 -6.102946825 4.056578938 1.05829457 0.957091503 0.439259482 0.048330485 0.20049716 5.770935666 0.016121783 0.016354506 7.89E-07 6.102946825 -0.101203067 IMPDSNDS(ph)PPAEREPGEVVDSLVGK ddPTM_HeLa_A486_30min_R1 7 IMPDSNDSPPAEREPGEVVDSLVGK 25 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IMPDS(0.132)NDS(0.868)PPAEREPGEVVDSLVGK;IMPDS(0.001)NDS(0.999)PPAEREPGEVVDSLVGK;IMPDS(0.161)NDS(0.839)PPAEREPGEVVDSLVGK;IMPDS(0.001)NDS(0.999)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK;IMPDSNDS(1)PPAEREPGEVVDSLVGK ;;;;;; 217.84 2.61E-38 2169373000 1652490 1937200 1318270 798781 2168280 2104610 2456650 2416560 1693760 2467450 TRUE FALSE FALSE 1536658.984 1783689.217 1828739.448 1859602.536 1896314.104 1844964.616 1841970.186 1866362.041 1840576.481 1849584.46 0.830813092 0.964372947 0.988729895 1.005416393 1.025264942 0.997502226 0.995883252 1.009071 0.995129728 1 20.81876975 -4.083839106 1.621499627 1.004157644 0.702704592 0.970025375 0.009044352 0.256195436 0.457074326 0.002620933 0.138611068 8.24E-05 4.083839106 -0.301453052 IMPESS(ph)ESPPTEREPGGVVDGLIGK ddPTM_HeLa_A486_30min_R1 1 IMPESSESPPTEREPGGVVDGLIGK 25 1 Q5JZB7;A0A087X074;Q5JZB8;Q9BPZ2;Q99865 Q5JZB7 SPIN2B;SPIN2A Spindlin-2B;Spindlin-2A 1 0 IMPES(0.13)S(0.379)ES(0.379)PPT(0.111)EREPGGVVDGLIGK 49.66 0.019892 80279000 99971 97896 69658 36055 113630 101940 114800 115470 92675 105810 TRUE FALSE FALSE 92963.54915 90138.36443 96631.44311 83937.86212 99377.46584 89363.67925 86075.82577 89180.00169 100708.1436 79314.48729 1.172087879 1.136467845 1.218332822 1.058291681 1.252954778 1.126700585 1.085247207 1.124384772 1.269732013 1 16.27529679 IMS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 IMSPEK 6 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 IMS(1)PEK 71.223 0.027744 133280000 345480 449070 334220 154990 545080 400710 492000 498240 399510 528270 TRUE FALSE FALSE 321263.6361 413484.0577 463638.9347 360824.5528 476710.9837 351274.4743 368896.3962 384801.6285 434139.8485 395987.7535 0.811296898 1.044183953 1.170841599 0.911201292 1.203852845 0.887084187 0.931585366 0.971751336 1.096346654 1 18.59509629 IMS(ph)SPLSK ddPTM_HeLa_A485_30min_R1 1 IMSSPLSK 8 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 1 0 IMS(0.5)S(0.5)PLSK 117.7 0.00087917 180090000 417200 458800 392550 522660 615010 492470 665790 680820 446910 727490 TRUE FALSE FALSE 510004.7007 512452.669 537770.5804 551211.5924 553777.445 518254.9677 523538.5275 513847.8275 536600.7377 546140.1315 0.933834874 0.938317182 0.984675085 1.009286007 1.013984165 0.948941376 0.958615742 0.940871762 0.982533066 1 19.05891165 -4.753539498 23.22318399 0.978157882 0.936075954 0.359379694 0.023295873 90.33193762 265531.2535 0.006670305 0.016902615 1.76E-05 4.753539498 -0.042081928 IMSCS(ph)PDTQCSR ddPTM_HeLa_A485_30min_R1 3 IMSCSPDTQCSR 12 0 Q9C0C9;K7EQ12 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 IMSCS(1)PDTQCSR;IMS(0.001)CS(0.999)PDTQCSR;IMS(0.002)CS(0.994)PDT(0.003)QCSR ;; 261.45 1.85E-33 1960360000 713960 805730 942270 841730 1237610 784650 965820 1087730 923280 1117990 TRUE FALSE FALSE 872777.9389 899953.1146 1290854.884 887711.5785 1114389.203 825733.0607 759464.667 820962.512 1108573.827 839295.6681 1.039893296 1.072271845 1.538021621 1.057686358 1.327767133 0.983840489 0.90488334 0.978156499 1.320838257 1 19.67881961 -6.276643623 24.6786049 1.027887217 1.209716704 0.192912151 0.172831007 1146.991041 1861720.916 0.061213789 0.054202491 5.29E-07 6.276643623 0.181829487 IMSS(ph)IGEGIDFSQER ddPTM_HeLa_A485_30min_R1 3 IMSSIGEGIDFSQER 15 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 IMS(0.046)S(0.954)IGEGIDFSQER;IMS(0.011)S(0.989)IGEGIDFSQER;IMS(0.023)S(0.977)IGEGIDFSQER ;; 199.15 2.99E-25 111175000 124178 141297 120433 125469 162771 119652 160529 167761 121414 174594 TRUE FALSE FALSE 151800.9677 157820.455 164986.1783 132323.0538 146564.9477 125916.7937 126230.6677 126617.3517 145780.6761 131070.929 1.158158936 1.204084356 1.258754932 1.009553032 1.118210948 0.960676747 0.963071436 0.966021624 1.112227382 1 16.99998821 -5.269845237 24.95299087 1.01655267 1.206707904 0.690500656 0.057809664 332.853136 988082.7824 0.01675549 0.025328284 5.37E-06 5.269845237 0.190155234 IMSS(ph)PLSK ddPTM_HeLa_A485_30min_R1 2 IMSSPLSK 8 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 1 0 IMS(0.209)S(0.791)PLSK;IMS(0.195)S(0.805)PLSK ; 123.86 0.00063104 481040000 985730 1135200 892580 1240580 1519200 1247400 1641260 1773620 1093240 1948070 TRUE FALSE FALSE 1205002.238 1267951.765 1222782.485 1308349.744 1367943.114 1312711.935 1290591.393 1338636.914 1312643.24 1462452.001 0.823960197 0.867004021 0.83611803 0.894627477 0.935376418 0.89761027 0.882484617 0.915337333 0.897563298 1 20.47995784 -9.029819845 0.018702756 1.893715899 1.63E-06 0.743210168 0.024056502 508.9719979 2.847167012 153.9879215 134.1708899 9.34E-10 9.029819845 -1.89371427 IMSS(ph)PLSK ddPTM_HeLa_A486_30min_R1 3 IMSSPLSK 8 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 1 0 IMS(0.343)S(0.657)PLSK;IMS(0.033)S(0.967)PLSK;IMS(0.056)S(0.944)PLSK ;; 137.98 0.00045327 706820000 1315840 1311870 861650 506880 1368090 1344540 1587910 1535740 1034810 1502980 TRUE FALSE FALSE 1223606.411 1207912.643 1195303.956 1180042.256 1196491.395 1178664.325 1190598.123 1186085.527 1124508.164 1126624.025 1.086082299 1.072152392 1.060960825 1.047414426 1.062014806 1.046191363 1.056783893 1.052778478 0.998121946 1 20.10357471 -4.469304768 0.058969185 0.891957898 1.254425545 0.746105213 0.013607362 82.80020516 0.825369853 1.660895522 3.67098669 3.39E-05 4.469304768 0.362467646 IMVGS(ph)TDDPSVFSLPDSK ddPTM_HeLa_A485_30min_R1 2 IMVGSTDDPSVFSLPDSK 18 0 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 IMVGS(0.985)T(0.015)DDPSVFSLPDSK;IMVGS(0.988)T(0.012)DDPSVFSLPDSK ; 298.23 9.57E-79 153474000 290780 221852 235458 425610 340850 280425 381960 282900 299770 571070 TRUE FALSE FALSE 355463.0078 247795.6615 322563.7124 448859.9966 306913.7772 295107.6194 300351.1257 213518.3314 359931.0893 428712.7588 0.829140259 0.57799927 0.752400543 1.046994724 0.715896065 0.688357445 0.70058826 0.498045199 0.839562346 1 18.70965183 -5.9546415 24.99999845 0.710139541 0.79455576 0.012657846 0.16121859 426.0761126 234836.1156 0.050224161 0.056948841 1.11E-06 5.9546415 0.084416219 IMVGS(ph)TDDPSVFSLPDSK ddPTM_HeLa_A486_30min_R1 1 IMVGSTDDPSVFSLPDSK 18 0 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 IMVGS(0.989)T(0.011)DDPSVFSLPDSK 216.68 2.84E-34 74980000 128930 146330 96222 57597 159080 182660 188470 195930 154370 205790 TRUE FALSE FALSE 119892.6728 134734.2779 133481.7353 134088.7268 139126.703 160125.2664 141312.8126 151321.0161 167750.9159 154258.8445 0.777217495 0.87342984 0.865310094 0.869244984 0.901904221 1.038029727 0.916075918 0.980955203 1.087463843 1 17.23499368 -5.71445595 0.492686041 1.029986529 0.783383831 0.726448258 0.046591323 0.757313731 0.348547973 0.039277562 0.092554966 1.93E-06 5.71445595 -0.246602698 IMVGST(ph)DDPSVFSLPDSK ddPTM_HeLa_A486_30min_R1 1 IMVGSTDDPSVFSLPDSK 18 0 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 IMVGS(0.284)T(0.716)DDPSVFSLPDSK 224.59 7.44E-34 103990000 208530 262000 161010 101720 263150 287410 297750 311260 235120 326020 TRUE FALSE FALSE 193913.1239 241238.1658 223357.384 236809.3006 230143.2732 251952.2764 223249.8007 240392.8928 255500.3909 244382.47 0.793482134 0.987133676 0.913966472 0.969010996 0.941733968 1.030975243 0.913526247 0.983674863 1.045493938 1 17.89878128 -3.60700076 1.638749929 0.974734299 1.07E-15 0.608793384 0.043162198 5.449012605 2.941358 0.011574256 14.34036104 0.000247172 3.60700076 -0.974734299 IMYTVFEHTFHVR ddPTM_HeLa_A485_30min_R1 2 IMYTVFEHTFHVR 13 0 P41250 P41250 GARS Glycine--tRNA ligase 0 0 ; ; 156.36 1.06E-06 63943000 28469 36630 40789 28262 45960 33203 38670 42789 32730 42183 FALSE FALSE TRUE 34801.83083 40913.55986 55878.54847 29805.8815 41384.06102 34941.45774 30407.8386 32294.93066 39298.61078 31667.55442 1.098974375 1.291970934 1.764536274 0.941211977 1.306828449 1.103383522 0.960220615 1.019811326 1.240973972 1 14.95071784 -5.303922423 24.9999865 1.087813901 1.375842681 0.350928855 0.188825084 541.0719141 318403.368 0.053567111 0.079453434 4.97E-06 5.303922423 0.28802878 IMYTVFEHTFHVR ddPTM_HeLa_A486_30min_R1 3 IMYTVFEHTFHVR 13 0 P41250 P41250 GARS Glycine--tRNA ligase 0 0 ;; ;; 156.14 1.38E-06 70404000 44452.3 49195 55933 16395.8 72751 43619.7 55106.1 49389.5 42552.2 47522.1 FALSE FALSE TRUE 41336.42332 45296.60903 77591.75554 38170.251 63625.8912 38238.34491 41317.97093 38144.58902 46240.65896 35622.25684 1.160410007 1.271581675 2.178181912 1.071528151 1.786127462 1.073439706 1.159892005 1.070807759 1.298083363 1 15.1204913 -6.288407932 24.50421198 1.127335462 1.495821112 0.268972191 0.307446224 826.5499493 751018.1625 0.105962658 0.093476391 5.15E-07 6.288407932 0.36848565 INAEK(ac)SSK ddPTM_HeLa_A485_30min_R1 1 INAEKSSK 8 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 1 INAEK(1)SSK 147.2 0.0013898 23435000 34029 30980 34229 53169 54198 39658 51627 46649 43058 84730 FALSE TRUE FALSE 41598.63365 34602.84151 46891.73149 56073.48784 48801.85682 41734.43156 40596.4697 35208.25961 51699.34565 63608.37034 0.653980497 0.54399824 0.737194354 0.881542595 0.767223819 0.656115403 0.638225276 0.55351614 0.812775825 1 15.956929 -8.008003486 20.27570552 1.000000007 0.683936702 0.528802957 0.094432219 23.73809163 60139.79648 0.101279091 0.026150148 9.82E-09 8.008003486 -0.316063305 INAEK(ac)SSK ddPTM_HeLa_A486_30min_R1 2 INAEKSSK 8 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 1 ; INAEK(1)SSK;INAEK(1)SSK 143.03 0.0017158 53337000 64064 94139 63349 40163 113383 106571 120262 121147 87413 106014 FALSE TRUE FALSE 59573.44443 86679.08279 87879.42935 93501.49373 99161.44689 93423.35355 90171.1756 93564.47272 94990.02922 79467.40436 0.749658868 1.090750144 1.105855036 1.176601834 1.247825416 1.175618536 1.134693857 1.177394348 1.195333231 1 16.2780756 -3.912282221 1.462701682 1.166245466 0.184530256 0.784526574 0.062672747 1.189432673 1.194311678 0.016845948 2.172993108 0.000122382 3.912282221 -0.981715211 INAGMLAQFIDKPVCFVGR ddPTM_HeLa_A486_30min_R1 2 INAGMLAQFIDKPVCFVGR 19 1 P35244 P35244 RPA3 Replication protein A 14 kDa subunit 0 0 ; ; 185.33 3.12E-18 21361500 6690.9 7351.4 7388.9 3399.6 9776.2 8681.8 10024.6 9312.9 8813.6 8893.9 FALSE FALSE TRUE 6221.902462 6768.848291 10250.07996 7914.440606 8549.977837 7610.727786 7516.339051 7192.555969 9577.569944 6666.80955 0.933265367 1.015305483 1.537479042 1.187140647 1.282469189 1.141584701 1.127426694 1.078860273 1.436604702 1 12.7027808 -4.544170552 24.99267291 1.224832097 0.953775053 0.303119063 0.153634066 226.340623 265681.6872 0.037952706 0.100431995 2.86E-05 4.544170552 -0.271057044 INALTAASEAACLIVSVDETIKNPR ddPTM_HeLa_A485_30min_R1 1 INALTAASEAACLIVSVDETIKNPR 25 1 Q99832-2;Q99832-4;Q99832-3;Q99832 Q99832-2 CCT7 T-complex protein 1 subunit eta 0 0 136.01 3.28E-06 60892000 11095 11535 12392 17577 13998 14807 16967 15180 13551 23250 FALSE FALSE TRUE 13563.04447 12883.91791 16976.31647 18537.187 12604.30997 15582.27162 13341.86184 11457.0812 16270.5614 17454.20288 0.777064674 0.738155618 0.972620554 1.062047183 0.722136098 0.892751833 0.764392504 0.65640816 0.932185876 1 14.09128685 INENEKS(ph)PSQNR ddPTM_HeLa_A485_30min_R1 1 INENEKSPSQNR 12 1 K7EQT1;Q9UM11-2;Q9UM11;Q9UM11-3 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 INENEKS(0.996)PS(0.004)QNR 91.657 0.0009699 369530000 104640 89150 68182 144190 125630 109300 138630 145440 81375 186860 TRUE FALSE FALSE 127916.807 99575.317 93405.35909 152066.7346 113121.8361 115022.779 109010.568 109770.612 97706.21608 140279.2409 0.911872677 0.70983644 0.665853041 1.084028782 0.806404678 0.819955813 0.777096934 0.782515013 0.696512295 1 17.097942 -11.10298617 2.52000637 1.352529501 0.806115228 0.205472431 0.11444088 32702359.54 8121042.071 66229424.5 0.028444011 7.89E-12 11.10298617 -0.546414273 INENEKS(ph)PSQNR ddPTM_HeLa_A486_30min_R1 2 INENEKSPSQNR 12 1 K7EQT1;Q9UM11-2;Q9UM11;Q9UM11-3 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 INENEKS(0.948)PS(0.052)QNR;INENEKS(0.941)PS(0.059)QNR ; 110.97 0.00019516 556880000 490120 473130 234821 251460 465310 539930 662650 610950 389320 681340 TRUE FALSE FALSE 455765.119 435637.4557 325749.9799 585411.5881 406946.481 473318.9262 496847.9612 471850.0219 423066.5711 510728.0292 0.892383212 0.852973463 0.637814965 1.146229607 0.796796842 0.926753378 0.972822976 0.923877279 0.828359806 1 18.96219571 -5.247656369 24.99894017 0.9335321 0.80024887 0.275739004 0.108973539 1156.392508 2097404.335 0.02865453 0.049306157 5.65E-06 5.247656369 -0.13328323 INENEKS(ph)PSQNRK ddPTM_HeLa_A485_30min_R1 2 INENEKSPSQNRK 13 2 K7EQT1;Q9UM11-2;Q9UM11;Q9UM11-3 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 INENEKS(0.926)PS(0.074)QNRK;INENEKS(0.988)PS(0.012)QNRK ; 91.518 0.00066982 360993000 437138 399793 255436 527024 559603 572247 759480 864955 390326 775390 TRUE FALSE FALSE 534377.84 446545.3136 349932.406 555813.9866 503886.9604 602208.9681 597210.8936 652823.4301 468660.8479 582099.543 0.918017969 0.767128782 0.60115561 0.954843537 0.8656371 1.034546368 1.02596008 1.121497926 0.805121484 1 19.15090636 -5.704131232 1.839491603 1.0000288 0.76972159 0.393554998 0.113554393 0.32682898 2.278018634 0.03882968 0.053497098 1.98E-06 5.704131232 -0.230307211 INENEKS(ph)PSQNRK ddPTM_HeLa_A486_30min_R1 2 INENEKSPSQNRK 13 2 K7EQT1;Q9UM11-2;Q9UM11;Q9UM11-3 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 INENEKS(0.998)PS(0.002)QNRK;INENEKS(0.925)PS(0.075)QNRK ; 116.86 0.00012071 194737000 128422 117140 48243 79093 118235 166620 201235 192373 89704 205724 TRUE FALSE FALSE 119420.281 107857.3998 66923.98159 184132.5011 103404.8638 146064.1185 150883.8746 148573.8674 97479.61495 154209.3714 0.774403526 0.699421824 0.433981288 1.194042227 0.670548507 0.947180558 0.978435183 0.963455502 0.632125104 1 17.23453092 -5.250378841 24.99447298 0.904874215 0.6422842 0.350100665 0.17225298 847.4930216 1915151.113 0.045193146 0.07732569 5.62E-06 5.250378841 -0.262590015 INFDKYHPGYFGK ddPTM_HeLa_A485_30min_R1 1 INFDKYHPGYFGK 13 1 E9PLL6;P46776 E9PLL6 RPL27A 60S ribosomal protein L27a 0 0 123.02 0.00011914 400930000 505820 732440 467870 381000 754590 856650 1000400 1379400 535710 616790 FALSE FALSE TRUE 618337.9139 818092.4866 640954.5827 401813.0653 679460.3701 901502.8694 786656.3675 1041099.987 643222.0832 463035.6042 1.335400363 1.766802551 1.384244704 0.867780062 1.467404156 1.946940713 1.698911186 2.248423183 1.389141736 1 18.82076361 -6.014314684 24.0651211 1.73399616 1.346807215 0.125107135 0.370982643 681.7432699 1146113.667 0.11839378 0.123004921 9.68E-07 6.014314684 -0.387188945 INFS(ph)DLDQR ddPTM_HeLa_A485_30min_R1 3 INFSDLDQR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 INFS(1)DLDQR;INFS(1)DLDQR;INFS(1)DLDQR ;; 137.62 0.00016381 289949000 370981 493612 499884 474346 644733 513883 630788 652129 466616 646017 TRUE FALSE FALSE 453504.4436 551335.6295 684811.8935 500258.3209 580541.1187 540789.1193 496014.9907 492193.3403 560261.5511 484976.851 0.935105341 1.136828755 1.412050683 1.031509689 1.197049132 1.115082335 1.022760137 1.01488007 1.155233595 1 18.88755636 -6.583724622 5.079043339 1.050310129 1.151575253 0.116856057 0.12125394 0.443106538 23.03206126 0.047829474 0.03693991 2.61E-07 6.583724622 0.101265125 INFS(ph)DLDQR ddPTM_HeLa_A486_30min_R1 4 INFSDLDQR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 INFS(1)DLDQR;INFS(1)DLDQR;INFS(1)DLDQR;INFS(1)DLDQR ;;; 141.73 0.00012099 573916000 642718 781863 621278 270034.3 858705 726855 834424 846563 670009 758237 TRUE FALSE FALSE 597666.7872 719905.3284 861853.48 628653.4972 750998.2118 637183.0202 625642.2896 653819.0852 728085.9196 568369.5199 1.051546162 1.266614945 1.516361187 1.106064761 1.321320348 1.121071764 1.100766786 1.150341569 1.281008031 1 19.11646966 -6.275208319 24.22471664 1.138167041 1.259709062 0.170182523 0.133411114 1008.09756 1773613.845 0.04694091 0.041630887 5.31E-07 6.275208319 0.121542021 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPT(ph)ASPHSNR ddPTM_HeLa_A485_30min_R1 1 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNR 40 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 INGEAQPWLSTSTEGLKIPMTPTSSFVS(0.014)PPPPT(0.62)AS(0.347)PHS(0.019)NR 80.859 0.00059253 1491200000 76667 95563 78031 83888 101060 91425 126620 116410 84580 115180 TRUE FALSE FALSE 93721.30965 106738.2616 106897.914 88470.58902 90998.11156 96211.87163 99566.60261 87860.26498 101554.4302 86467.74573 1.08388751 1.234428638 1.23627502 1.023162895 1.052393708 1.112690875 1.151488359 1.016104493 1.174477597 1 16.39987446 -1.000360428 0.016813387 0.111460642 2.342591463 0.202083519 0.074601191 6893.399109 8.963576504 462.7867327 760.8432705 0.099917043 1.000360428 2.231130821 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPT(ph)ASPHSNR ddPTM_HeLa_A486_30min_R1 1 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNR 40 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 INGEAQPWLSTSTEGLKIPMTPTSSFVS(0.003)PPPPT(0.606)AS(0.389)PHS(0.002)NR 161.6 5.90E-15 1421700000 707510 631980 333420 186720 651110 565020 660500 700460 482810 776440 TRUE FALSE FALSE 657917.2026 581899.6032 462529.1533 434693.5963 569441.7124 495313.5771 495235.9139 540980.5489 524660.3595 582014.3702 1.130414018 0.999802811 0.794704009 0.746877772 0.978398029 0.851033243 0.850899805 0.929496893 0.901456023 1 19.15069525 -4.512966603 4.08330908 0.875741097 1.112186231 0.52728838 0.074069492 0.152791235 5.781778736 0.01916619 0.072894767 3.07E-05 4.512966603 0.236445134 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_HeLa_A485_30min_R1 1 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNR 40 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 INGEAQPWLSTSTEGLKIPMTPTSSFVS(0.001)PPPPT(0.254)AS(0.725)PHS(0.021)NR 132.96 1.53E-07 1041900000 241770 279410 226160 230900 319270 290240 393300 377590 232700 319030 TRUE FALSE FALSE 295550.9024 312084.569 309825.9953 243513.4823 287482.3578 305436.5176 309268.242 284985.4605 279400.7555 239501.6923 1.234024276 1.303057886 1.293627583 1.016750571 1.200335392 1.275300039 1.291298776 1.189910007 1.166591989 1 17.86967632 -8.196721934 1.737285004 1.000558292 1.227555574 0.427626798 0.079082076 0.762873929 4.236322948 0.081284993 0.023078988 6.36E-09 8.196721934 0.226997283 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_HeLa_A486_30min_R1 1 INGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNR 40 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 INGEAQPWLSTSTEGLKIPMTPTSSFVS(0.002)PPPPT(0.471)AS(0.486)PHS(0.041)NR 109.19 6.02E-06 1013300000 301530 278510 156090 74869 258040 240190 276830 273840 210950 319520 TRUE FALSE FALSE 280394.3041 256439.8533 216532.2282 174298.8157 225674.2171 210557.7999 207564.206 211492.6099 229235.3158 239510.1123 1.17069923 1.070684869 0.90406299 0.727730508 0.942232522 0.879118622 0.866619802 0.883021631 0.957100782 1 17.86972704 -4.655426337 3.098745913 0.883830537 1.154254018 0.642138876 0.068959801 0.143609271 2.637758209 0.017996586 0.060815559 2.21E-05 4.655426337 0.270423481 INHEGEVNR ddPTM_HeLa_A485_30min_R1 2 INHEGEVNR 9 0 Q16576;E9PC52;Q16576-2;Q5JP01;Q09028-4;Q09028-3;Q09028-2;Q09028 Q16576;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 0 0 ; ; 119.75 0.00098594 54341000 8485.9 11498 12052 8975.1 14653.6 11467.9 13440.5 15844.5 12130 12372.5 FALSE FALSE TRUE 10373.55918 12842.59108 16510.53633 9465.386987 13194.63613 12068.34151 10568.82738 11958.61153 14564.37974 9288.263449 1.116845925 1.382668693 1.77756977 1.019069607 1.420570832 1.299310854 1.137869036 1.287497022 1.568041197 1 13.18119318 -5.292023681 24.98377742 1.264263529 1.421392651 0.117540258 0.220345711 1615.236591 1319454.512 0.061514839 0.091253033 5.10E-06 5.292023681 0.157129122 INHSSS(ph)LAR ddPTM_HeLa_A486_30min_R1 2 INHSSSLAR 9 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 INHSS(0.069)S(0.93)LAR;INHS(0.001)S(0.107)S(0.892)LAR ; 114.87 0.0007974 134990000 102562 142614 205060 10454.4 182286 85896 84177 99983 144359 32796 TRUE FALSE FALSE 95372.93343 131312.7472 284464.7237 24338.37154 159421.9901 75299.02485 63115.02427 77219.05351 156872.1544 24583.66813 3.879524118 5.341462736 11.5712888 0.990021969 6.484873993 3.062969466 2.567355853 3.141071263 6.381153272 1 14.58541258 -5.291255662 24.99986018 3.547442316 6.771833251 0.289373025 2.539584976 922.7966713 773729.162 0.702631876 1.042326267 5.11E-06 5.291255662 3.224390936 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTR ddPTM_HeLa_A485_30min_R1 9 INHTVILDDPFDDPPDLLIPDRSPEPTR 28 1 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.996)PEPT(0.004)R;INHTVILDDPFDDPPDLLIPDRS(0.973)PEPT(0.027)R;INHTVILDDPFDDPPDLLIPDRS(0.941)PEPT(0.059)R;INHTVILDDPFDDPPDLLIPDRS(0.999)PEPT(0.001)R;INHTVILDDPFDDPPDLLIPDRS(0.847)PEPT(0.153)R;INHTVILDDPFDDPPDLLIPDRS(0.859)PEPT(0.141)R;INHTVILDDPFDDPPDLLIPDRS(0.985)PEPT(0.015)R;INHTVILDDPFDDPPDLLIPDRS(0.972)PEPT(0.028)R;INHTVILDDPFDDPPDLLIPDRS(0.959)PEPT(0.041)R ;;;;;;;; 275.24 3.04E-77 38348066000 589430 768024 734558 620932 841293 687144 820383 827542 687687 867935 TRUE FALSE FALSE 720546.67 857837.7259 1006301.572 654851.9429 757530.915 723121.7973 645101.4701 624586.027 825699.4731 651574.7777 1.105854147 1.31656067 1.544414557 1.005029607 1.162615468 1.109806306 0.990065135 0.958579197 1.267236703 1 19.31357123 -5.286938829 24.99466242 1.070877629 1.321704938 0.434614544 0.131608133 685.6339521 672059.5457 0.037205068 0.05520735 5.16E-06 5.286938829 0.250827309 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTR ddPTM_HeLa_A486_30min_R1 10 INHTVILDDPFDDPPDLLIPDRSPEPTR 28 1 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.95)PEPT(0.05)R;INHTVILDDPFDDPPDLLIPDRS(0.989)PEPT(0.011)R;INHTVILDDPFDDPPDLLIPDRS(0.957)PEPT(0.043)R;INHTVILDDPFDDPPDLLIPDRS(0.958)PEPT(0.042)R;INHTVILDDPFDDPPDLLIPDRS(0.968)PEPT(0.032)R;INHTVILDDPFDDPPDLLIPDRS(0.98)PEPT(0.02)R;INHTVILDDPFDDPPDLLIPDRS(0.993)PEPT(0.007)R;INHTVILDDPFDDPPDLLIPDRS(0.974)PEPT(0.026)R;INHTVILDDPFDDPPDLLIPDRS(0.998)PEPT(0.002)R;INHTVILDDPFDDPPDLLIPDRS(0.979)PEPT(0.021)R ;;;;;;;;; 290.12 3.90E-92 39841059000 687888 814284.8 694394.7 321227.1 927250.4 755631.6 844449.8 863467.9 735616.1 796090.6 TRUE FALSE FALSE 639670.6035 749757.9069 963282.9244 747832.9227 810946.0086 662409.4559 633159.5284 666875.1085 799379.8958 596744.3321 1.071934108 1.256413956 1.614230538 1.253188145 1.3589505 1.110038957 1.061023112 1.117522317 1.339568477 1 19.18675343 -6.264810325 24.81779964 1.128937744 1.321554691 0.275296306 0.149791676 375.1964687 2762285.336 0.05312346 0.048795302 5.43E-07 6.264810325 0.192616947 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTREQLDSGR ddPTM_HeLa_A485_30min_R1 9 INHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGR 35 2 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.998)PEPT(0.002)REQLDS(0.001)GR;INHTVILDDPFDDPPDLLIPDRS(0.98)PEPT(0.02)REQLDSGR;INHTVILDDPFDDPPDLLIPDRS(0.916)PEPT(0.039)REQLDS(0.045)GR;INHTVILDDPFDDPPDLLIPDRS(1)PEPTREQLDSGR;INHTVILDDPFDDPPDLLIPDRS(0.992)PEPT(0.008)REQLDSGR;INHTVILDDPFDDPPDLLIPDRS(0.891)PEPT(0.107)REQLDS(0.002)GR;INHTVILDDPFDDPPDLLIPDRS(0.967)PEPT(0.027)REQLDS(0.006)GR;INHTVILDDPFDDPPDLLIPDRS(0.892)PEPT(0.099)REQLDS(0.009)GR;INHTVILDDPFDDPPDLLIPDRS(0.869)PEPT(0.067)REQLDS(0.065)GR ;;;;;;;; 315.88 8.14E-111 4902015000 111316 275026.3 275189.3 124175.6 470206.2 405257 476035.8 865193 277608.3 174292.2 TRUE FALSE FALSE 136077.8602 307188.2334 376993.2737 130958.9986 423390.8197 426475.6299 374326.8625 653003.0602 333321.7394 130844.3622 1.039997887 2.347737635 2.881234372 1.000876128 3.235835406 3.259411585 2.860855877 4.990685494 2.547467342 1 16.99749224 -5.791813807 24.95511146 3.189686743 1.931322071 0.206831819 1.063100006 277.2718934 227800.4018 0.317749198 0.360336432 1.62E-06 5.791813807 -1.258364672 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTREQLDSGR ddPTM_HeLa_A486_30min_R1 6 INHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGR 35 2 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.997)PEPT(0.003)REQLDSGR;INHTVILDDPFDDPPDLLIPDRS(0.824)PEPT(0.144)REQLDS(0.032)GR;INHTVILDDPFDDPPDLLIPDRS(0.995)PEPT(0.005)REQLDSGR;INHTVILDDPFDDPPDLLIPDRS(0.988)PEPT(0.011)REQLDSGR;INHTVILDDPFDDPPDLLIPDRS(0.695)PEPT(0.139)REQLDS(0.166)GR;INHTVILDDPFDDPPDLLIPDRS(0.968)PEPT(0.031)REQLDS(0.001)GR ;;;;; 330.24 4.00E-129 2883910000 120397.9 106956.6 160732 65197.5 275099.7 115663 186740 214536.1 92096.1 123919.8 TRUE FALSE FALSE 111958.6289 98480.96949 222971.735 151783.0749 240594.1304 101393.675 140015.6769 165690.9133 100079.0641 92889.4755 1.205288633 1.060195129 2.400398256 1.634017999 2.590111841 1.091551809 1.507336285 1.783742587 1.077399389 1 16.50322753 INISEGNCPER ddPTM_HeLa_A485_30min_R1 2 INISEGNCPER 11 0 H3BRU6;F8VZX2;F8VXH9;F8W0G4;F8W1G6;F8VTZ0;J3QT27;E9PFP8;P57721-2;P57721-3;P57721-5;P57721-4;P57721;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-8;Q15366-4;Q15366-7;Q15365 H3BRU6;Q15366-2;Q15366-6;Q15366-5;Q15365 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 3;Poly(rC)-binding protein 2;Poly(rC)-binding protein 1 0 0 ; ; 136.48 0.0015022 56089000 18930.4 18163.9 17873.4 26532 26885 21087 27494 24464 22904 55468 FALSE FALSE TRUE 23141.40217 20288.0101 24485.51443 27981.37598 24208.235 22191.08271 21619.68229 18464.16564 27500.62271 41640.84841 0.555738009 0.487214139 0.588016704 0.671969401 0.581357872 0.5329162 0.519194088 0.443414732 0.660424169 1 15.34571184 -8.047229967 10.38953224 0.999999875 0.550718753 0.845411719 0.058236478 1.086491337 239.1909919 0.061215137 0.015812699 8.97E-09 8.047229967 -0.449281122 INLCIHS(ph)EEEDMNLGLVR ddPTM_HeLa_A485_30min_R1 4 INLCIHSEEEDMNLGLVR 18 0 P41002 P41002 CCNF Cyclin-F 1 0 INLCIHS(1)EEEDMNLGLVR;INLCIHS(1)EEEDMNLGLVR;INLCIHS(1)EEEDMNLGLVR;INLCIHS(1)EEEDMNLGLVR ;;; 222.57 1.37E-34 178554000 73287.5 89420.5 93873.5 87570.1 117872.6 72169.1 84949.5 83848.5 83993.9 110299.9 TRUE FALSE FALSE 89590.05154 99877.44962 128601.2141 92353.83282 106136.7901 75947.76248 66799.34535 63284.52391 100850.7053 82804.16485 1.081951031 1.20618872 1.553076639 1.115328353 1.281780817 0.917197373 0.806714801 0.764267402 1.217942424 1 16.33741571 -6.264209587 24.15649732 0.918084239 1.254976142 0.458223537 0.165556786 133.3671687 1162968.216 0.057367873 0.052883667 5.44E-07 6.264209587 0.336891903 INLCIHS(ph)EEEDMNLGLVR ddPTM_HeLa_A486_30min_R1 3 INLCIHSEEEDMNLGLVR 18 0 P41002 P41002 CCNF Cyclin-F 1 0 INLCIHS(1)EEEDMNLGLVR;INLCIHS(1)EEEDMNLGLVR;INLCIHS(1)EEEDMNLGLVR ;; 214.55 1.52E-26 150277000 95125 116312 111635 36071 125471 105908 116321 111186 105179 108132 TRUE FALSE FALSE 88457.22873 107095.0135 154863.0617 83975.11093 109733.2572 92842.14775 87216.25548 85871.37497 114296.0004 81055.04338 1.091322946 1.321262799 1.910591312 1.036025735 1.353811591 1.145420987 1.076012693 1.059420505 1.410103501 1 16.30661433 INLLGFLGLVHCLPCK ddPTM_HeLa_A485_30min_R1 2 INLLGFLGLVHCLPCK 16 0 O95633-2;O95633 O95633-2 FSTL3 Follistatin-related protein 3 0 0 ; ; 163.27 1.80E-10 4481500 14857.7 14619.6 10377.5 13153.6 19809.1 6376.8 15500.6 10342 6963.8 17754.9 FALSE FALSE TRUE 18162.74411 16329.23505 14216.56909 13872.14786 17836.83645 6710.679388 12188.77018 7805.608284 8361.370784 13328.93018 1.362655806 1.2250972 1.06659491 1.040754784 1.338204657 0.503467217 0.914459751 0.585614012 0.627309969 1 13.70227337 -6.256983374 24.99999998 0.712039161 1.190687171 0.671725968 0.167617877 229.2980935 1286457.156 0.054864704 0.053078759 5.53E-07 6.256983374 0.478648011 INNFS(ph)ADIKDSK ddPTM_HeLa_A485_30min_R1 1 INNFSADIKDSK 12 1 P13797-3;P13797 P13797-3 PLS3 Plastin-3 1 0 INNFS(1)ADIKDSK 99.044 0.00057579 111460000 258020 158170 92848 385820 279830 199700 400000 363120 161720 550120 TRUE FALSE FALSE 315415.6588 176666.6056 127196.3389 406896.3697 251969.1427 210155.9832 314536.7323 274064.2506 194175.7206 412985.2082 0.763745656 0.427779499 0.307992481 0.985256521 0.610116628 0.508870485 0.761617429 0.663617595 0.470175969 1 18.65573058 -11.20109245 2.428954234 2.198935409 0.61066963 0.28329836 0.18560723 8467089.052 2833285.019 55296129.81 0.047012656 6.29E-12 11.20109245 -1.588265779 INNFS(ph)ADIKDSK ddPTM_HeLa_A486_30min_R1 1 INNFSADIKDSK 12 1 P13797-3;P13797 P13797-3 PLS3 Plastin-3 1 0 INNFS(1)ADIKDSK 130.01 6.39E-05 0 163610 166040 65729 142550 144380 238720 326870 291750 115390 294620 TRUE FALSE FALSE 152141.7839 152882.3857 91181.02908 331863.6041 126270.5141 209269.1535 245083.6687 225324.8939 125392.0981 220845.2343 0.688906801 0.692260289 0.412872976 1.502697602 0.571760194 0.947582836 1.109753033 1.020284157 0.567782676 1 17.75267618 -5.160118855 23.36217322 0.951051159 0.607439661 0.28768082 0.260608825 30.46780843 7016.262807 0.068002159 0.117783464 6.92E-06 5.160118855 -0.343611498 INNYLTVPAHKLDS(ph)PTMSR ddPTM_HeLa_A485_30min_R1 2 INNYLTVPAHKLDSPTMSR 19 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 0 INNYLTVPAHKLDS(0.862)PT(0.109)MS(0.029)R;INNYLTVPAHKLDS(0.846)PT(0.119)MS(0.035)R ; 135.58 1.22E-06 738640000 708650 664370 304700 756300 416960 808690 1050160 1088940 489690 1697650 TRUE FALSE FALSE 866286.7477 742062.2922 417421.2096 797614.7539 375445.9984 851031.7579 825784.737 821875.7576 587966.2913 1274457.098 0.679730019 0.582257569 0.327528648 0.625846688 0.294592889 0.667760225 0.647950204 0.644883032 0.461346476 1 20.28145138 -14 0.305953699 4.923378505 0.524542591 0.501800957 0.134390147 236.654427 2.168595098 596.8795285 0.130809915 1.00E-14 14 -4.398835914 INNYLTVPAHKLDS(ph)PTMSR ddPTM_HeLa_A486_30min_R1 2 INNYLTVPAHKLDSPTMSR 19 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 0 INNYLTVPAHKLDS(0.975)PT(0.02)MS(0.005)R;INNYLTVPAHKLDS(0.95)PT(0.02)MS(0.029)R ; 155.05 4.47E-09 731780000 686310 531000 369220 165794 741460 710010 666770 661220 704990 1254770 TRUE FALSE FALSE 638203.2131 488921.6261 512191.8721 385976.8108 648459.173 622416.1851 499937.0936 510674.6403 766099.1008 940567.4248 0.678529998 0.519815606 0.544556252 0.410365914 0.689434012 0.661745419 0.531527119 0.54294315 0.814507371 1 19.84317184 -7.950180318 3.254667093 0.997820152 0.569746409 0.745668826 0.081617916 0.106166652 2.43440187 0.080832888 0.021570206 1.12E-08 7.950180318 -0.428073743 INPPSSGGTSSS(ph)PIK ddPTM_HeLa_A485_30min_R1 3 INPPSSGGTSSSPIK 15 0 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88;A0A0A0MT46 P14859-6 POU2F1 "POU domain, class 2, transcription factor 1;POU domain protein" 1 0 INPPS(0.002)S(0.002)GGT(0.044)S(0.121)S(0.334)S(0.497)PIK;INPPSSGGTS(0.001)S(0.436)S(0.562)PIK;INPPSSGGT(0.002)S(0.004)S(0.057)S(0.937)PIK ;; 168.42 4.16E-12 1052460000 930180 833730 746950 1331850 1073130 869280 1234150 978220 889570 1764640 TRUE FALSE FALSE 1137095.332 931227.471 1023277.888 1404605.593 966285.4092 914794.1566 970463.7704 738310.0112 1068098.539 1324747.724 0.858348583 0.702947025 0.772432268 1.060281567 0.729410885 0.690542162 0.732564965 0.557321215 0.806265616 1 20.33728622 -5.939343527 24.99996655 0.726099647 0.840443772 0.087305836 0.135432804 143.5492266 59163.50735 0.041336626 0.046871333 1.15E-06 5.939343527 0.114344125 INPPSSGGTSSS(ph)PIK ddPTM_HeLa_A486_30min_R1 4 INPPSSGGTSSSPIK 15 0 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88;A0A0A0MT46 P14859-6 POU2F1 "POU domain, class 2, transcription factor 1;POU domain protein" 1 0 INPPSSGGT(0.002)S(0.005)S(0.047)S(0.946)PIK;INPPS(0.005)S(0.012)GGT(0.078)S(0.199)S(0.199)S(0.508)PIK;INPPSSGGTS(0.003)S(0.093)S(0.905)PIK;INPPSSGGT(0.002)S(0.002)S(0.088)S(0.909)PIK ;;; 228.99 5.41E-34 1853830000 1938890 2003140 1251290 794458 1803940 1990600 2347580 2205680 1624750 2416620 TRUE FALSE FALSE 1802983.823 1844403.891 1735822.999 1849538.374 1577673.024 1745020.011 1760190.654 1703494.814 1765584.638 1811482.622 0.995308374 1.01817366 0.958233315 1.021008069 0.870929152 0.963310379 0.971685089 0.940387058 0.974662752 1 20.78873954 INPY(ph)MSSPCHIEMILTEK ddPTM_HeLa_A485_30min_R1 1 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 0 INPY(0.365)MS(0.317)S(0.317)PCHIEMILTEK 76.768 0.0015325 30295000 36974 40092 35728 42880 61528 42862 58592 52996 41453 63196 TRUE FALSE FALSE 45198.73874 44780.41065 48945.27397 45222.42582 55402.05628 45106.18804 46073.34055 39998.64791 49772.23687 47442.40024 0.952707673 0.943890074 1.03167786 0.953206954 1.167775155 0.950756872 0.971142698 0.843099162 1.049108743 1 15.53388938 -9.318766589 10.25845789 1.000001138 0.983871893 0.003060353 0.080589924 0 0 0.078239046 0.018975756 4.80E-10 9.318766589 -0.016129246 INPYMS(ph)SPCHIEMILTEK ddPTM_HeLa_A485_30min_R1 7 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 0 INPYMS(0.5)S(0.5)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK;INPY(0.218)MS(0.391)S(0.391)PCHIEMILTEK;INPYMS(0.635)S(0.365)PCHIEMILTEK;INPYMS(0.639)S(0.361)PCHIEMILTEK;INPYMS(0.676)S(0.324)PCHIEMILTEK ;;;;;; 256.33 7.67E-58 3907227000 1761788 1793417 1600274 1985308 2706454 2039022 2787654 2759728 1972465 3060537 TRUE FALSE FALSE 2153691.663 2003141.517 2192281.946 2093760.349 2436989.937 2145782.039 2192048.95 2082900.381 2368320.633 2297601.451 0.937365208 0.871840291 0.954161108 0.911280913 1.060666956 0.933922651 0.9540597 0.906554259 1.030779569 1 21.13169713 INPYMS(ph)SPCHIEMILTEK ddPTM_HeLa_A486_30min_R1 10 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 0 INPY(0.004)MS(0.498)S(0.498)PCHIEMILTEK;INPY(0.008)MS(0.496)S(0.496)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK;INPY(0.001)MS(0.499)S(0.499)PCHIEMILTEK;INPYMS(0.597)S(0.403)PCHIEMILTEK;INPY(0.015)MS(0.492)S(0.492)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK;INPY(0.292)MS(0.354)S(0.354)PCHIEMILTEK;INPYMS(0.5)S(0.5)PCHIEMILTEK ;;;;;;;;; 221.48 1.50E-34 4150380000 1876908 2006691 1352284 563057 2098235 1900607 2414357 2281393 1722562 2171704 TRUE FALSE FALSE 1745346.442 1847673.497 1875924.58 1310825.151 1835054.801 1666129.432 1810259.342 1761969.616 1871875.061 1627895.183 1.072149153 1.135007657 1.152362019 0.805226998 1.127256116 1.023486923 1.112024509 1.082360606 1.14987444 1 20.63457638 -6.770861303 24.66413329 1.09292827 1.053014516 0.025112908 0.098537384 749.4037256 1961717.4 0.041343155 0.028302626 1.69E-07 6.770861303 -0.039913754 INPYMSS(ph)PCHIEMILTEK ddPTM_HeLa_A485_30min_R1 2 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 0 INPYMS(0.167)S(0.833)PCHIEMILTEK;INPYMS(0.364)S(0.636)PCHIEMILTEK ; 213.48 3.37E-26 444590000 269810 294680 232578 292410 369480 298040 381690 413890 291170 460540 TRUE FALSE FALSE 329828.3037 329140.2626 318618.2806 308383.6179 332693.2739 313644.9135 300138.8134 312382.8285 349605.1482 345735.8536 0.953989296 0.951999219 0.921565632 0.891963083 0.962275883 0.907180757 0.868115963 0.903530326 1.011191476 1 18.3993107 -7.765645741 24.99918401 1.005595792 0.919498698 0.595460091 0.028191824 81.19707632 482538.0371 0.02602765 0.007660704 1.72E-08 7.765645741 -0.086097094 INPYMSSPCHIEMILTEK ddPTM_HeLa_A485_30min_R1 1 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 0 77.023 0.01445 0 54822 57793 53110 83464 56747 68099 79326 74537 54481 82863 FALSE FALSE TRUE 67016.96477 64551.38862 72757.59909 88023.42698 51097.06943 71664.55834 62377.35207 56256.68388 65414.83697 62206.77908 1.077325747 1.037690579 1.169608846 1.415013416 0.821406769 1.152037759 1.002742032 0.90434973 1.051570873 1 15.92478419 -5.778670011 24.99990135 0.992772616 1.164729793 0.351506575 0.123532764 305.7559643 443618.9913 0.039109674 0.044449534 1.66E-06 5.778670011 0.171957177 INRLPTPIAGLDNIILFLR ddPTM_HeLa_A486_30min_R1 1 INRLPTPIAGLDNIILFLR 19 1 Q9UPQ0-10;Q9UPQ0-2;Q9UPQ0;Q9UPQ0-4;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 0 0 106.13 6.23E-05 4272700 1090 2455.6 2497.8 1112.1 2892.9 2637.2 2449.4 2759.8 2273.8 3216.3 FALSE FALSE TRUE 1013.596629 2261.009313 3465.015053 2589.025002 2530.045507 2311.849077 1836.534213 2131.453786 2470.894815 2410.917545 0.42041945 0.937821087 1.437218398 1.073875383 1.049411877 0.958908396 0.761757372 0.884084066 1.024877362 1 11.2353666 -6.52477923 24.78333136 0.901207603 1.010673699 0.008476027 0.242061313 234.1921022 3053873.24 0.097215134 0.075849787 2.99E-07 6.52477923 0.109466096 INRLS(ph)TPIAGLDNINVFLK ddPTM_HeLa_A485_30min_R1 2 INRLSTPIAGLDNINVFLK 19 1 Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 INRLS(0.957)T(0.043)PIAGLDNINVFLK;INRLS(0.978)T(0.022)PIAGLDNINVFLK ; 262.55 1.50E-58 293590000 215280 182003 153662 211906 253250 222684 284690 301520 178465 312280 TRUE FALSE FALSE 263168.2933 203286.6676 210507.9682 223481.8882 228035.5408 234343.3899 223863.6558 227571.7472 214281.2885 234434.3431 1.122567154 0.867136892 0.897939975 0.953281355 0.972705354 0.999612031 0.954909818 0.970727003 0.9140354 1 17.83882441 -5.661477887 6.134322971 0.96799264 0.948727971 0 0.066782854 1.292821452 67.50818439 0.019588397 0.025309741 2.18E-06 5.661477887 -0.019264669 INRLS(ph)TPIAGLDNINVFLK ddPTM_HeLa_A486_30min_R1 2 INRLSTPIAGLDNINVFLK 19 1 Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 INRLS(0.855)T(0.145)PIAGLDNINVFLK;INRLS(0.969)T(0.031)PIAGLDNINVFLK ; 273.88 1.07E-69 372220000 244460 317770 209345 129417 344830 337690 376080 358390 277820 326270 TRUE FALSE FALSE 227324.6164 292588.7479 290408.9905 301289.3164 301578.206 296029.2412 281980.8062 276792.4206 301901.6613 244569.8683 0.929487422 1.196340129 1.187427513 1.23191511 1.233096326 1.210407656 1.152966259 1.13175193 1.234418873 1 17.89988715 -11.3965131 1.92432061 5.92E-05 1.17256874 0.251839239 0.086236593 1161823.552 127143.9466 5035894.865 0.022059202 4.01E-12 11.3965131 1.172509554 INS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_HeLa_A485_30min_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 INS(0.461)S(0.461)PNVNT(0.033)T(0.033)AS(0.012)GVEDLNIIQVTIPDDDNER 83.557 0.00041903 144430000 70041 76465 69458 72208 95803 81085 81627 81148 80458 119430 TRUE FALSE FALSE 85621.37881 85406.91659 95153.40459 76152.5402 86264.51694 85330.48522 64186.72462 61246.32576 96605.1826 89658.29895 0.954974384 0.952582389 1.061289426 0.849364098 0.962147598 0.951729915 0.715903886 0.683108273 1.077481769 1 16.45214951 -6.579705738 24.99994532 0.841444157 0.955909932 0.093053264 0.120079986 150.826315 66351.59897 0.045122991 0.034952122 2.63E-07 6.579705738 0.114465775 INS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_HeLa_A486_30min_R1 2 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 INS(0.469)S(0.469)PNVNT(0.023)T(0.033)AS(0.006)GVEDLNIIQVTIPDDDNER;INS(0.455)S(0.455)PNVNT(0.03)T(0.03)AS(0.03)GVEDLNIIQVTIPDDDNER ; 157.16 2.48E-10 298220000 135510 176339 160192 77956 175470 160310 161823 184062 176299 160197 TRUE FALSE FALSE 126011.4488 162365.2554 222222.6325 181485.5077 153460.9164 140532.5821 121333.1738 142155.1006 191580.7393 120082.6285 1.049372839 1.35211277 1.850581015 1.511338567 1.277961003 1.170299017 1.01041404 1.183810701 1.59540761 1 16.87366794 -5.912653324 4.336410987 1.194770062 1.462397299 0.192346341 0.238665293 0.36810762 12.78344899 0.08015521 0.091363664 1.22E-06 5.912653324 0.267627237 INSSPNVNTTAS(ph)GVEDLNIIQVTIPDDDNER ddPTM_HeLa_A485_30min_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 INS(0.181)S(0.181)PNVNT(0.204)T(0.204)AS(0.23)GVEDLNIIQVTIPDDDNER 50.757 0.021501 194110000 19799 20821 26169 28668 35524 23934 30247 26739 26451 38546 TRUE FALSE FALSE 24203.21924 23255.83483 35850.00208 30234.06025 31987.10583 25187.14723 23784.48135 20181.21832 31759.47308 28937.19159 0.83640526 0.803665925 1.238890166 1.044816673 1.105397728 0.870407453 0.821934682 0.697414546 1.097531285 1 14.82063729 -6.292545382 23.09650913 0.873825744 1.009716666 0.101252894 0.153359225 544.1989912 404070.337 0.05600116 0.049396886 5.10E-07 6.292545382 0.135890922 INVDIPEEANQNLS(ph)FGATER ddPTM_HeLa_A485_30min_R1 1 INVDIPEEANQNLSFGATER 20 0 Q9H9A6 Q9H9A6 LRRC40 Leucine-rich repeat-containing protein 40 1 0 INVDIPEEANQNLS(0.996)FGAT(0.004)ER 181.54 6.57E-19 31287000 19185 23655 16286 21892 31605 21627 38556 31117 23585 24141 TRUE FALSE FALSE 23452.63706 26421.24648 22310.86912 23087.90453 28458.29523 22759.35628 30318.19563 23485.50696 28318.29317 18123.09298 1.294074752 1.457877334 1.23107403 1.27394946 1.570278057 1.255820753 1.672904049 1.295888455 1.562552992 1 14.14554157 -4.209736933 20.43637967 1.383154661 1.294070411 0.00880851 0.190375476 20808.92878 8222815.783 0.043772681 22.81249491 6.17E-05 4.209736933 -0.089084249 INVELSTK(ac)GQK ddPTM_HeLa_A485_30min_R1 1 INVELSTKGQK 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 1 INVELSTK(1)GQK 189.13 6.64E-09 34623000 31759 33119 31292 39507 55450 40346 51025 56918 39059 64727 FALSE TRUE FALSE 38823.67998 36991.97895 42868.21297 41665.16737 49929.2033 42458.45417 40123.09191 42958.77126 46897.78303 48591.75011 0.798976779 0.761281058 0.882211751 0.857453524 1.027524285 0.873779069 0.825718189 0.884075407 0.965138793 1 15.56842377 -2.042073815 0.343740723 0.934401916 3.11E-27 0.406648359 0.06305405 33.0752965 0.909093751 0.058421645 17.50664503 0.009076662 2.042073815 -0.934401916 INVYYNEATGGK ddPTM_HeLa_A485_30min_R1 2 INVYYNEATGGK 12 0 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 0 ; ; 224.42 1.05E-20 149151000 142772 130450 124787 182163 198761 162487 198619 207410 141879 264180 FALSE FALSE TRUE 174531.1388 145704.9927 170950.9041 192114.1034 178971.6569 170994.5681 156182.4281 156542.3723 170352.8139 198324.7879 0.880026852 0.734678677 0.861974471 0.968684275 0.902416984 0.862194635 0.787508358 0.789323281 0.85895876 1 17.59750548 -11.4036865 2.074016242 2.042580153 0.848355273 0.3430233 0.062452992 4203558.599 350144.7022 20601487.74 0.017850599 3.95E-12 11.4036865 -1.19422488 INVYYNEATGGK ddPTM_HeLa_A486_30min_R1 2 INVYYNEATGGK 12 0 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 0 ; ; 251.24 1.01E-38 82817000 105699 134653 90948 48743 151411 148643 156264 152042 123198 144452 FALSE FALSE TRUE 98290.04593 123982.6059 126165.5013 113476.1673 132419.6205 130304.938 117165.0944 117425.3557 133876.9018 108280.279 0.90773728 1.145015575 1.165175251 1.047985546 1.222933869 1.203404158 1.082053865 1.084457454 1.236392288 1 16.72441098 -4.260130697 24.68978666 1.136508259 0.907737192 0.450451899 0.074135539 83.16277664 1568751.932 0.017664392 0.106663903 5.49E-05 4.260130697 -0.228771067 IPAKLS(ph)PTQLR ddPTM_HeLa_A485_30min_R1 1 IPAKLSPTQLR 11 1 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 IPAKLS(0.991)PT(0.009)QLR 109.1 0.00028983 1302000000 1403000 1230300 1116600 1675500 1710900 1485300 1904400 1763900 1348500 2244300 TRUE FALSE FALSE 1715092.51 1374172.883 1529676.806 1767028.322 1540556.789 1563068.011 1497509.382 1331300.759 1619131.581 1684837.313 1.01795734 0.815611615 0.907907721 1.048782757 0.914365308 0.927726374 0.888815419 0.790165762 0.961001735 1 20.68417786 -6.660287018 4.106640265 0.892638426 0.936650221 0.01298908 0.078669005 0.722796793 22.31439096 0.031616251 0.023711031 2.19E-07 6.660287018 0.044011796 IPAKLS(ph)PTQLR ddPTM_HeLa_A486_30min_R1 2 IPAKLSPTQLR 11 1 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 IPAKLS(0.5)PT(0.5)QLR;IPAKLS(0.972)PT(0.028)QLR ; 112.62 0.00022474 3116100000 2606200 2880100 1758680 1024340 2729500 2837000 3118500 3043300 2230400 3114700 TRUE FALSE FALSE 2423518.838 2651870.387 2439687.995 2384715.287 2387140.658 2486999.785 2338218.316 2350407.025 2423732.868 2334758.847 1.038016771 1.135821967 1.044942178 1.021396831 1.022435641 1.065206279 1.001481724 1.006702267 1.038108442 1 21.15484211 -4.987264473 24.66996658 1.024159939 1.087785083 0.447869689 0.028420366 161.1052317 312071.1579 0.007052305 0.014666939 1.03E-05 4.987264473 0.063625144 IPAKLS(ph)PTQLRR ddPTM_HeLa_A485_30min_R1 1 IPAKLSPTQLRR 12 2 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 IPAKLS(0.946)PT(0.054)QLRR 88.768 0.0010342 315230000 144900 222430 136770 122090 229290 280950 301060 456350 163280 190190 TRUE FALSE FALSE 177132.5051 248441.2536 187366.9145 128759.4676 206461.0825 295660.1076 236736.0716 344429.447 196048.7983 142779.1332 1.24060499 1.740038954 1.312284998 0.901808721 1.446017201 2.070751523 1.658057913 2.412323421 1.373091389 1 17.12342562 -6.017010102 23.60041246 1.784990264 1.311522719 0.169721738 0.404191815 513.6949068 712718.8654 0.127242291 0.130439405 9.62E-07 6.017010102 -0.473467545 IPAKLSPT(ph)QLR ddPTM_HeLa_A485_30min_R1 1 IPAKLSPTQLR 11 1 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 IPAKLS(0.348)PT(0.652)QLR 127.36 6.42E-05 1152100000 1180200 1137200 925800 1428900 1442000 1193700 1605400 1491400 1108000 1889300 TRUE FALSE FALSE 1442731.418 1270185.648 1268291.946 1506957.189 1298429.417 1256200.286 1262393.175 1125631.812 1330365.437 1418332.28 1.017202696 0.895548713 0.894213552 1.062485294 0.915462078 0.885688286 0.890054603 0.793630539 0.937978678 1 20.43576413 -5.990389137 24.99902196 0.889271756 0.961003775 0.162934996 0.067820293 342.0170551 889621.1424 0.020792178 0.023546256 1.02E-06 5.990389137 0.071732019 IPASQTS(ph)VPFDHLGK ddPTM_HeLa_A485_30min_R1 2 IPASQTSVPFDHLGK 15 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IPAS(0.18)QT(0.112)S(0.708)VPFDHLGK;IPAS(0.008)QT(0.185)S(0.807)VPFDHLGK ; 140.35 1.39E-06 223660000 136488 165342 137060 160311 179317 192542 232353 259764 172956 242901 TRUE FALSE FALSE 166849.2847 184677.3086 187764.1975 169068.384 161463.5699 202623.2014 182708.8834 196056.4717 207666.6828 182350.251 0.914993447 1.012761472 1.029689822 0.927162881 0.885458446 1.111175884 1.001966723 1.075164255 1.138834094 1 17.47635266 -6.271359606 24.99829392 1.066159615 0.959989575 0.489410442 0.056733665 670.159779 1688751.619 0.020502245 0.01829992 5.35E-07 6.271359606 -0.10617004 IPASQTS(ph)VPFDHLGK ddPTM_HeLa_A486_30min_R1 1 IPASQTSVPFDHLGK 15 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IPASQT(0.203)S(0.797)VPFDHLGK 151.57 3.40E-08 105700000 103130 120970 84116 37821 134600 114010 134900 149810 102230 155430 TRUE FALSE FALSE 95901.11956 111383.8966 116687.9679 88049.19937 117717.2129 99944.60537 101146.5932 115701.5333 111091.3787 116509.3163 0.823119752 0.956008499 1.001533367 0.755726685 1.010367382 0.857825009 0.868141676 0.993066795 0.953497816 1 16.83008579 -7.269854705 24.63822493 0.979961736 0.899985694 0.214886851 0.075112461 889.5840649 2604486.759 0.038920233 0.019167587 5.37E-08 7.269854705 -0.079976042 IPAVTLAVTSVAGS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 IPAVTLAVTSVAGSPAR 17 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 IPAVTLAVTSVAGS(1)PAR;IPAVTLAVT(0.001)S(0.01)VAGS(0.989)PAR ; 138.23 3.81E-06 647720000 67606 105061 93856 85996 127526 74887 101055 112936 92078 109974 TRUE FALSE FALSE 82644.72146 117346.97 128577.2401 90693.74373 114829.0637 78807.96752 79463.77371 85238.26892 110557.21 82559.50572 1.001032174 1.421362313 1.557388685 1.098525759 1.390864234 0.954559585 0.962503021 1.032446454 1.339121511 1 16.33314671 -6.259625067 24.9982929 1.053802572 1.304710905 0.300702986 0.179597215 205.074771 2825613.648 0.06137226 0.058370347 5.50E-07 6.259625067 0.250908333 IPAVTLAVTSVAGS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 IPAVTLAVTSVAGSPAR 17 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 IPAVTLAVTS(0.005)VAGS(0.994)PAR;IPAVTLAVTSVAGS(1)PAR ; 201.22 4.72E-25 720550000 236919 213854 159413 94529 217775 201015 230798 229094 160743 226763 TRUE FALSE FALSE 220312.2016 196907.4302 221141.9828 220068.2892 190459.6288 176215.8131 173049.8993 176934.2973 174676.3327 169980.0688 1.296106085 1.158414816 1.300987724 1.294671139 1.120482126 1.03668515 1.018059944 1.040912023 1.027628321 1 17.37500607 -5.976185634 3.108587459 1.027980957 1.257523707 0.883041598 0.040665949 0.084228805 1.679321472 0.013946361 0.01537331 1.06E-06 5.976185634 0.22954275 IPCDS(ph)PQSDPVDT(ph)PTSTK ddPTM_HeLa_A486_30min_R1 1 IPCDSPQSDPVDTPTSTK 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 IPCDS(0.952)PQS(0.048)DPVDT(0.945)PT(0.021)S(0.018)T(0.016)K 90.972 0.00067099 0 48831 55986 45011 24303 61187 63296 68526 74744 47332 63373 TRUE FALSE FALSE 45408.19906 51549.46546 62440.46464 56578.61221 53512.35591 55487.18307 51380.07001 57726.42285 51434.77587 47503.98831 0.955881825 1.08516079 1.314425733 1.191028674 1.12648133 1.168053148 1.081594869 1.21519108 1.082746475 1 15.53576102 -8.005051465 22.83317103 0.999999993 1.146191724 0.196452716 0.08947388 92.41840039 417749.2175 0.088922065 0.022959578 9.88E-09 8.005051465 0.146191731 DSS(ph)QEYTDSTGIDLHEFLVNTLK ddPTM_HeLa_A485_30min_R1 1 DSSQEYTDSTGIDLHEFLVNTLK 23 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9;H7C2F9;Q15032-2;Q15032-4;Q15032;Q15032-3 A0A0U1RRA6;Q15032-2 R3HDM2;R3HDM1 R3H domain-containing protein 2;R3H domain-containing protein 1 1 0 DS(0.026)S(0.974)QEYTDSTGIDLHEFLVNTLK 315.82 3.78E-105 73170000 50082 45055 35742 78518 73425 65836 109560 117660 82264 167380 TRUE FALSE FALSE 61222.56812 50323.79032 48964.45315 82807.23952 66114.54919 69283.07116 86151.61098 88803.70052 98773.63023 125655.2464 0.487226518 0.400490961 0.389672971 0.659003439 0.526158287 0.551374281 0.685618893 0.706724972 0.786068493 1 16.93911138 -7.478689617 0.297375146 1.057637371 0.369839988 0.875476964 0.062897562 0.519308304 0.16746294 0.130662231 0.118491449 3.32E-08 7.478689617 -0.687797383 IPCKS(ph)PPPELTDTATSTKR ddPTM_HeLa_A485_30min_R1 1 IPCKSPPPELTDTATSTKR 19 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(1)PPPELTDTATSTKR 80.293 0.0011076 288930000 294070 269070 182340 345460 416260 293100 402670 554550 310670 608230 TRUE FALSE FALSE 359484.857 300535.3959 249795.1538 364331.605 374815.6928 308446.2628 316636.265 418545.743 373018.6194 456609.4546 0.787291751 0.658189165 0.547065224 0.797906398 0.820867131 0.675514402 0.693450961 0.916638363 0.81693144 1 18.80060121 -7.804108956 0.582494164 1.003270244 0.691701185 0.524870662 0.086434638 0.658123304 0.540984738 0.093261472 0.044352324 1.57E-08 7.804108956 -0.31156906 IPCKS(ph)PPPELTDTATSTKR ddPTM_HeLa_A486_30min_R1 1 IPCKSPPPELTDTATSTKR 19 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(1)PPPELTDTATSTKR 80.683 0.0010547 280670000 347130 264620 165710 139450 276880 310060 391760 344080 234250 456760 TRUE FALSE FALSE 322797.9796 243650.5475 229877.3499 324646.6474 242151.1286 271807.9497 293737.5044 265740.4952 254554.9786 342384.323 0.942794275 0.711628807 0.671401505 0.948193669 0.707249463 0.793867976 0.857917506 0.776146796 0.743477319 1 18.38525712 -10.37549113 5.114321313 1.000133151 0.791895226 0.315042846 0.090708989 0.000132429 1.62E-05 0.084456891 0.020470758 4.21E-11 10.37549113 -0.208237925 IPCKS(ph)SPELEDTATSSK ddPTM_HeLa_A485_30min_R1 2 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(0.614)S(0.386)PELEDTATSSK;IPCKS(0.5)S(0.5)PELEDTATSSK ; 178.32 2.53E-14 1432480000 418760 359410 181853 719950 475840 344190 676650 1018220 493480 1971430 TRUE FALSE FALSE 511911.7173 401439.873 249127.9922 759279.0455 428463.6988 362211.2562 532078.1998 768499.9485 592516.9095 1479988.782 0.345888917 0.271245213 0.168331 0.513030271 0.289504693 0.24473919 0.359515022 0.519260658 0.400352298 1 20.49715481 -9.532427704 0.387226978 1.192400841 0.28528403 0.820946008 0.094322857 3.465307837 0.498195848 0.946111253 0.068301065 2.93E-10 9.532427704 -0.907116811 IPCKS(ph)SPELEDTATSSK ddPTM_HeLa_A486_30min_R1 1 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(0.599)S(0.401)PELEDTATSSK 120.75 2.20E-05 555920000 359970 294700 154500 154130 315240 491460 506920 439250 232210 699240 TRUE FALSE FALSE 334737.9619 271346.8987 214326.5377 358822.4293 275699.6597 430828.662 380083.2543 339242.3638 252338.1498 524145.7527 0.638635265 0.517693594 0.408906371 0.684585208 0.52599808 0.821963471 0.725148019 0.647229062 0.481427444 1 18.99960852 -6.241039927 24.5240779 0.712480074 0.552146694 0.281679481 0.14137419 966.9168726 1162420.887 0.046097013 0.046039925 5.74E-07 6.241039927 -0.160333379 IPCKSS(ph)PELEDTATSSK ddPTM_HeLa_A485_30min_R1 1 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(0.46)S(0.54)PELEDTATSSK 172.69 1.35E-12 790150000 207200 178500 65261 348650 225630 163720 332810 423690 219950 965520 TRUE FALSE FALSE 253290.9252 199374.0223 89403.75964 367695.8667 203165.485 172292.126 261702.4247 319779.3632 264091.9475 724833.6331 0.349446981 0.27506177 0.123343834 0.50728312 0.280292574 0.237698857 0.361051713 0.441176221 0.364348363 1 19.46729037 -11.89370419 0.292432245 2.326082522 0.273229712 0.82093648 0.095656855 24.61664749 0.706118435 20.2507777 0.104119662 1.28E-12 11.89370419 -2.05285281 IPEISIQDMTAQVTS(ph)PSGK ddPTM_HeLa_A485_30min_R1 2 IPEISIQDMTAQVTSPSGK 19 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 IPEISIQDMTAQVT(0.05)S(0.947)PS(0.004)GK;IPEISIQDMTAQVT(0.138)S(0.86)PS(0.002)GK ; 141.6 2.82E-08 208408000 158133 112938 101251 242440 182702 122800 172097 127214 140043 325020 TRUE FALSE FALSE 193309.1403 126145.1167 138707.9583 255683.8833 164511.5474 129229.6181 135327.07 96014.56704 168148.3455 243998.4955 0.79225546 0.516991371 0.568478744 1.047891229 0.67423181 0.529632848 0.554622559 0.39350475 0.689136813 1 17.89651273 -8.031224417 23.43368783 1.000000009 0.631478649 0.289689056 0.170605914 2486.900607 1866398.655 0.174268438 0.044995917 9.31E-09 8.031224417 -0.36852136 IPEISIQDMTAQVTS(ph)PSGK ddPTM_HeLa_A486_30min_R1 2 IPEISIQDMTAQVTSPSGK 19 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 IPEISIQDMTAQVT(0.027)S(0.973)PSGK;IPEISIQDMTAQVT(0.001)S(0.901)PS(0.097)GK ; 251 1.58E-46 211712000 200490 304160 180254 148490 277890 364590 407180 383220 309480 351320 TRUE FALSE FALSE 186436.6863 280057.2539 250053.1762 345692.2243 243034.445 319610.5927 305299.2573 295969.1716 336305.9756 263347.1853 0.707950177 1.063452619 0.949519076 1.312686232 0.922867069 1.213647271 1.159303286 1.123874445 1.277044124 1 18.00660651 -3.756494113 1.023961448 1.140803181 4.51E-12 0.506278022 0.122787686 3.624316511 1.506859641 0.036367029 5.789809066 0.000175189 3.756494113 -1.140803181 IPEPES(ph)PAKPNVPTASTAPPADSR ddPTM_HeLa_A485_30min_R1 1 IPEPESPAKPNVPTASTAPPADSR 24 1 K7EL81;Q9BZL4-3;Q9BZL4-5;Q9BZL4-2;Q9BZL4-4;Q9BZL4;K7ER83 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 IPEPES(1)PAKPNVPTASTAPPADSR 147.55 1.41E-09 166610000 75498 55042 47906 121080 83085 58661 94412 61298 61336 152110 TRUE FALSE FALSE 92292.26963 61478.6831 65628.42293 127694.2938 74812.76567 61732.39925 74240.10492 46264.56939 73645.57259 114191.7764 0.808221683 0.538381003 0.574721097 1.118244219 0.655150205 0.540602846 0.650135301 0.405147996 0.644928864 1 16.80109923 -10.26379113 5.134168852 1.000057186 0.655558303 0.237953986 0.182677907 0.000124424 1.78E-05 0.184044201 0.044629887 5.45E-11 10.26379113 -0.344498883 IPEPS(ph)PVTR ddPTM_HeLa_A486_30min_R1 1 IPEPSPVTR 9 0 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 IPEPS(1)PVTR 90.827 0.0034313 34006000 52042 64494 48691 15482 68646 58165 51803 49955 59713 52498 TRUE FALSE FALSE 48394.12455 59383.26056 67545.45919 36042.87842 60035.77858 50989.19368 38841.34148 38581.33701 64888.97092 39352.1591 1.229770505 1.509021663 1.716435915 0.915905995 1.525603168 1.295715276 0.987019324 0.980412203 1.648930387 1 15.26415517 -5.752615363 0.984322 1.174801781 1.446358655 0.110490577 0.271498467 1.2161379 2.525270287 0.126898441 0.200798511 1.77E-06 5.752615363 0.271556873 IPETS(ph)LDCLENTLGVEEQR ddPTM_HeLa_A485_30min_R1 1 IPETSLDCLENTLGVEEQR 19 0 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein 1 0 IPET(0.012)S(0.988)LDCLENTLGVEEQR 127.78 4.74E-06 32773000 21494 26698 27596 31331 45543 29835 27584 30276 25776 39326 TRUE FALSE FALSE 26275.26615 29820.09886 37804.90877 33042.5332 41008.57901 31397.11447 21690.45306 22850.76353 30949.00677 29522.75194 0.890000573 1.010071789 1.280534716 1.119222668 1.389050014 1.063488747 0.734702954 0.7740052 1.048310362 1 14.84953959 -6.575112937 7.543740725 0.872822719 1.146287775 0.365376234 0.154210461 0.242052001 29.51242694 0.061334989 0.047489278 2.66E-07 6.575112937 0.273465056 IPEVPLHDT(ph)PER ddPTM_HeLa_A485_30min_R1 3 IPEVPLHDTPER 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 IPEVPLHDT(1)PER;IPEVPLHDT(1)PER;IPEVPLHDT(1)PER ;; 147.64 2.06E-07 421907000 192619 304764 316298 168901 344051 272389 267968 318593 267648 238344 TRUE FALSE FALSE 235466.432 340403.4987 433309.7925 178127.634 309796.0744 286650.8668 210714.4477 240457.5672 321362.4986 178929.2272 1.315975236 1.902447711 2.421682579 0.995520054 1.731388881 1.602034901 1.1776413 1.343869702 1.796031334 1 17.44902954 -5.270965483 24.9950996 1.408099743 1.882276449 0.287021738 0.360372699 883.0163085 2316903.844 0.100557899 0.151321923 5.36E-06 5.270965483 0.474176707 IPEVPLHDT(ph)PER ddPTM_HeLa_A486_30min_R1 4 IPEVPLHDTPER 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 IPEVPLHDT(1)PER;IPEVPLHDT(1)PER;IPEVPLHDT(1)PER;IPEVPLHDT(1)PER ;;; 129.05 4.13E-05 38045000 253134 278108 274023 69498 323906 233351 242984 290298 234467 236105 TRUE FALSE FALSE 235390.6138 256069.7092 380132.0442 161794.8562 283278.6892 204562.5262 182186.8332 224203.4826 254790.7883 176982.7712 1.330019935 1.446862355 2.147847734 0.914184218 1.60060037 1.155832993 1.029404342 1.266809651 1.43963611 1 17.4332494 -5.282792593 24.99704917 1.219668791 1.622105411 0.344218467 0.277488171 944.7284181 1105940.305 0.077312598 0.114791086 5.21E-06 5.282792593 0.40243662 IPGGNIYIS(ph)PLKS(ph)PYK ddPTM_HeLa_A486_30min_R1 2 IPGGNIYISPLKSPYK 16 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 2 0 IPGGNIYIS(1)PLKS(1)PYK;IPGGNIYIS(1)PLKS(0.996)PY(0.004)K ; 112.58 0.00018151 713030000 947200 907280 280960 728060 535860 1238420 1473170 1254320 686670 2180990 TRUE FALSE FALSE 880806.1713 835383.8285 389755.2364 1694960.474 468647.4421 1085636.332 1104567.284 968738.7176 746191.1085 1634855.908 0.538766852 0.510983154 0.238403418 1.036764442 0.286659784 0.664056279 0.675635864 0.592552966 0.456426224 1 20.64073206 -14 0.327704142 5.357151857 0.542140454 0.281436945 0.211387866 454.8341197 3.968265922 1379.595384 0.174782744 1.00E-14 14 -4.815011403 IPGT(ph)PGAGGRLS(ph)PENNQVLTK ddPTM_HeLa_A486_30min_R1 1 IPGTPGAGGRLSPENNQVLTK 21 1 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 2 0 IPGT(1)PGAGGRLS(1)PENNQVLTK 81.346 0.0023815 217740000 189810 195170 138560 69804 209220 197830 260790 226280 144590 207450 TRUE FALSE FALSE 176505.2992 179704.0184 192214.1428 162507.2397 182977.6767 173423.746 195537.5836 174760.9837 157123.1776 155503.1697 1.135059173 1.155629295 1.236078616 1.045041332 1.176681331 1.115242514 1.25745079 1.123841938 1.010417845 1 17.24658446 -7.715045169 4.006697321 1.000519253 1.15926246 0.540560688 0.056235748 0.156156653 4.97191105 0.045404552 0.014106552 1.93E-08 7.715045169 0.158743207 IPGTPGAGGRLS(ph)PENNQVLTK ddPTM_HeLa_A485_30min_R1 4 IPGTPGAGGRLSPENNQVLTK 21 1 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 0 IPGTPGAGGRLS(1)PENNQVLTK;IPGTPGAGGRLS(1)PENNQVLTK;IPGTPGAGGRLS(1)PENNQVLTK;IPGT(0.007)PGAGGRLS(0.993)PENNQVLTK ;;; 196.55 5.10E-21 6480000000 2060950 2162640 1974260 2176590 2982000 2645360 3262990 3351550 2183790 3160630 TRUE FALSE FALSE 2519401.217 2415541.936 2704620.93 2295491.6 2685101.61 2783866.959 2565825.53 2529577.107 2622056.622 2372743.108 1.061809519 1.0180377 1.139870945 0.967442111 1.131644467 1.173269432 1.08137519 1.066098179 1.10507396 1 21.17812448 -4.732236098 24.99978616 1.086219768 1.039923615 0.075030337 0.059835862 543.7667967 465490.0806 0.015059071 0.039827824 1.85E-05 4.732236098 -0.046296153 IPGTPGAGGRLS(ph)PENNQVLTK ddPTM_HeLa_A486_30min_R1 4 IPGTPGAGGRLSPENNQVLTK 21 1 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 0 IPGTPGAGGRLS(1)PENNQVLTK;IPGTPGAGGRLS(1)PENNQVLTK;IPGTPGAGGRLS(1)PENNQVLTK;IPGTPGAGGRLS(1)PENNQVLTK ;;; 190.92 7.96E-20 7199240000 3078910 3224410 2259900 1180302 3547570 3201690 3745990 3677380 2785550 3757650 TRUE FALSE FALSE 2863094.309 2968896.009 3134993.802 2747802.705 3102600.691 2806698.04 2808703.681 2840120.851 3027003.717 2816709.982 1.016467555 1.054029711 1.112998435 0.975536254 1.101498099 0.996445519 0.99715757 1.008311423 1.07465935 1 21.4255796 -6.307835826 24.99991451 1.014699412 1.051342042 0.159701579 0.042166469 817.8288231 440670.4251 0.014452448 0.012745912 4.92E-07 6.307835826 0.03664263 IPGTPGAGGRLS(ph)PENNQVLTKK ddPTM_HeLa_A485_30min_R1 2 IPGTPGAGGRLSPENNQVLTKK 22 2 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 0 IPGTPGAGGRLS(1)PENNQVLTKK;IPGT(0.001)PGAGGRLS(0.999)PENNQVLTKK ; 94.96 0.00050774 1035070000 314910 536250 300870 249870 571080 703160 861020 1235690 384780 424560 TRUE FALSE FALSE 384960.6431 598959.7727 412174.3332 263519.7654 514221.27 739976.3703 677056.0431 932635.09 462001.8166 318725.0054 1.207814374 1.879236842 1.293197353 0.826793508 1.613369711 2.321676548 2.124263963 2.926143459 1.449531128 1 18.28195268 -6.050879891 5.760381242 2.086818143 1.327379035 0.235227119 0.540480475 0.259704247 20.02309715 0.173582241 0.177014004 8.89E-07 6.050879891 -0.759439108 IPHS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 IPHSPAR 7 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 IPHS(1)PAR;IPHS(1)PAR ; 100.02 0.0033229 165501000 18933.6 26794 23098 5610 29553 22009.6 24213.2 25538.1 25855 21515.2 TRUE FALSE FALSE 17606.45241 24670.74586 32042.16419 13060.36351 25846.18717 19294.27933 18154.80126 19723.63212 28096.13222 16127.65388 1.091693345 1.529716972 1.986783969 0.809811744 1.602600562 1.196347558 1.125693879 1.222969706 1.742109077 1 13.97724896 -5.261553895 25 1.260258736 1.535429947 0.145970446 0.323149037 21.61393472 4719025.737 0.087761819 0.140152866 5.48E-06 5.261553895 0.275171211 IPLFNTDVDNLEGKT(ph)PPVFASEGK ddPTM_HeLa_A486_30min_R1 2 IPLFNTDVDNLEGKTPPVFASEGK 24 1 Q96PZ0;Q96PZ0-2 Q96PZ0 PUS7 Pseudouridylate synthase 7 homolog 1 0 IPLFNTDVDNLEGKT(1)PPVFASEGK;IPLFNTDVDNLEGKT(1)PPVFASEGK ; 161.24 8.00E-14 121869000 208048 200690 85934 126361 164848 262380 318670 303970 168345 393060 TRUE FALSE FALSE 193464.9096 184786.5935 119209.9462 294174.7939 144171.2267 230010.2233 238935.3955 234762.6666 182937.2801 294635.2176 0.656625203 0.627170761 0.404601823 0.998437309 0.489321093 0.780660999 0.810953278 0.796790922 0.62089414 1 18.16857036 -14 0.086322083 1.986203224 0.42172238 0.284813891 0.157964612 288.800168 1.741382479 53.3034166 4.142875162 1.00E-14 14 -1.564480845 IPLNLDGPHPS(ph)PPTPDSVGQLHIMDYNETHHEHS ddPTM_HeLa_A485_30min_R1 4 IPLNLDGPHPSPPTPDSVGQLHIMDYNETHHEHS 34 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1 Q92574 TSC1 Hamartin 1 0 IPLNLDGPHPS(0.985)PPT(0.015)PDSVGQLHIMDYNETHHEHS;IPLNLDGPHPS(0.969)PPT(0.031)PDSVGQLHIMDYNETHHEHS;IPLNLDGPHPS(0.966)PPT(0.034)PDSVGQLHIMDYNETHHEHS;IPLNLDGPHPS(0.77)PPT(0.23)PDSVGQLHIMDYNETHHEHS ;;; 238.83 3.34E-51 1780390000 370985 558381 487305 306072 576223 469517 534734 633586 498882 504672 TRUE FALSE FALSE 453509.3334 623678.8007 667579.398 322791.9383 518852.2149 494100.1841 420483.7125 478198.0401 599003.0414 378866.5582 1.197016004 1.646170102 1.76204361 0.851993747 1.369485386 1.304153596 1.109846471 1.262180654 1.581039626 1 18.53133028 -5.242110738 24.99956165 1.22840682 1.546185894 0.288332439 0.231852429 1087.196623 1406172.477 0.061912656 0.107029465 5.73E-06 5.242110738 0.317779074 IPLNLDGPHPS(ph)PPTPDSVGQLHIMDYNETHHEHS ddPTM_HeLa_A486_30min_R1 2 IPLNLDGPHPSPPTPDSVGQLHIMDYNETHHEHS 34 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1 Q92574 TSC1 Hamartin 1 0 IPLNLDGPHPS(0.966)PPT(0.034)PDSVGQLHIMDYNETHHEHS;IPLNLDGPHPS(1)PPTPDSVGQLHIMDYNETHHEHS ; 228.14 5.85E-40 1205200000 248000 251130 205740 41533 293500 204032 211846 231210 229720 210150 TRUE FALSE FALSE 230616.4807 231229.5442 285408.0379 96690.92296 256686.4932 178860.6063 158839.8901 178568.5303 249632.3146 157527.0722 1.463979985 1.467871783 1.811803102 0.613805117 1.629475427 1.135427732 1.00833392 1.1335736 1.584694689 1 17.26524026 -5.22199366 24.99998316 1.175947053 1.569883574 0.310068563 0.288340529 686.8647087 435321.53 0.075123683 0.13011546 6.00E-06 5.22199366 0.393936521 IPLNLDGPHPSPPT(ph)PDSVGQLHIMDYNETHHEHS ddPTM_HeLa_A486_30min_R1 1 IPLNLDGPHPSPPTPDSVGQLHIMDYNETHHEHS 34 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1 Q92574 TSC1 Hamartin 1 0 IPLNLDGPHPS(0.349)PPT(0.651)PDSVGQLHIMDYNETHHEHS 247.21 1.28E-51 334530000 216490 217450 203710 34326 258920 195070 227670 242020 216500 203530 TRUE FALSE FALSE 201315.169 200218.4701 282591.9675 79912.66274 226443.8393 171004.2467 170704.558 186917.3293 235266.3943 152564.7632 1.319539091 1.312350675 1.852275463 0.523795017 1.484247309 1.120863318 1.11889898 1.225167105 1.542075571 1 17.21906227 -5.216439528 24.99997071 1.166428335 1.47648427 0.222378377 0.29721587 747.9496158 415527.2719 0.077713849 0.134603618 6.08E-06 5.216439528 0.310055935 IPMPPS(ph)SPQPR ddPTM_HeLa_A485_30min_R1 3 IPMPPSSPQPR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 IPMPPS(0.5)S(0.5)PQPR;IPMPPS(0.5)S(0.5)PQPR;IPMPPS(0.678)S(0.322)PQPR ;; 95.477 0.00088326 256130000 366420 451080 366643 344468 482950 423500 464790 469530 336634 459880 TRUE FALSE FALSE 447928.8649 503829.8821 502279.503 363285.4146 434865.8023 445673.8051 365483.8195 354377.0313 404193.356 345240.3795 1.297440541 1.459359658 1.454868934 1.052268032 1.259602955 1.290908688 1.058635783 1.02646461 1.170759216 1 18.39724169 -5.77813486 0.430475633 1.025250283 1.469137616 0.543855772 0.110114804 1.30540365 0.441338294 0.106975656 0.259514084 1.67E-06 5.77813486 0.443887333 IPMPPS(ph)SPQPR ddPTM_HeLa_A486_30min_R1 3 IPMPPSSPQPR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 IPMPPS(0.767)S(0.233)PQPR;IPMPPS(0.5)S(0.5)PQPR;IPMPPS(0.5)S(0.5)PQPR ;; 105.2 0.00074605 1653200000 577787 628782 546327 213308 722050 545771 673690 657256 489798 633770 TRUE FALSE FALSE 537287.115 578955.0243 757879.4455 496591.804 631483.7562 478439.323 505125.6364 507613.1566 532254.085 475069.8668 1.130964417 1.21867343 1.595301025 1.045302678 1.329243971 1.007092549 1.063265999 1.068502113 1.120370123 1 18.85778018 -6.263394801 24.98097613 1.056841274 1.267651874 0.369375295 0.138415358 199.9981267 2555007.145 0.047343229 0.043823215 5.45E-07 6.263394801 0.2108106 IPMTPTSSFVSPPPPT(ph)ASPHSNR ddPTM_HeLa_A486_30min_R1 2 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 IPMTPTSSFVSPPPPT(0.615)AS(0.371)PHS(0.014)NR;IPMTPTSSFVSPPPPT(0.427)AS(0.389)PHS(0.183)NR ; 122.8 7.65E-06 493010000 101578 114098 95789 29379 108646 116646 103734 105412 114843 112733 TRUE FALSE FALSE 94457.90675 105056.4589 132881.0661 68395.79673 95018.6056 102255.4025 77778.65601 81411.98873 124797.6837 84503.92303 1.117793155 1.243213986 1.572483991 0.809380136 1.124428336 1.210066927 0.920414736 0.96341076 1.476827101 1 16.3667307 -5.262237406 24.99998396 1.072162706 1.304368722 0.228406405 0.201259863 111.0628568 3479323.087 0.055436563 0.087887776 5.47E-06 5.262237406 0.232206016 IPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_HeLa_A485_30min_R1 4 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 IPMTPTSSFVSPPPPT(0.005)AS(0.982)PHS(0.013)NR;IPMTPTSSFVSPPPPT(0.25)AS(0.742)PHS(0.008)NR;IPMTPTSSFVSPPPPT(0.163)AS(0.728)PHS(0.109)NR;IPMTPTSSFVSPPPPT(0.241)AS(0.725)PHS(0.034)NR ;;; 159.13 8.02E-11 2739020000 297107 313443 342145 337062 344386 257062 270291 178342 323911 463049 TRUE FALSE FALSE 363197.4271 350097.4323 468718.6733 355474.8436 310097.7206 270521.3688 212541.1198 134603.3449 388916.9666 347619.4061 1.044813439 1.007128561 1.348367396 1.022597811 0.892061016 0.778211354 0.611419029 0.387214702 1.118801079 1 18.4071491 -5.902298988 2.100111906 0.73094359 1.125377897 0.349401158 0.207700284 0.314620367 2.831177643 0.072858166 0.085296969 1.25E-06 5.902298988 0.394434307 IPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_HeLa_A486_30min_R1 2 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 IPMTPTSSFVSPPPPT(0.096)AS(0.9)PHS(0.004)NR;IPMTPTSSFVSPPPPT(0.127)AS(0.653)PHS(0.22)NR ; 128.58 2.17E-06 3422400000 213097 296046 163177 54210.5 246306 211813 216607 181386 225183 251462 TRUE FALSE FALSE 198160.0007 272586.2368 226363.5044 126204.7836 215412.0048 185681.6656 162409.6376 140088.3674 244702.0437 188494.2785 1.051278598 1.446124726 1.200903849 0.669541721 1.142803944 0.985078524 0.861615742 0.743196921 1.298193482 1 17.52416121 -5.023688777 24.33147452 0.950170414 1.26740484 0.301803687 0.192357237 545.6094861 560413.3941 0.049690197 0.086798902 9.47E-06 5.023688777 0.317234426 IPNSYEVLFPES(ph)PAR ddPTM_HeLa_A485_30min_R1 2 IPNSYEVLFPESPAR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 IPNSYEVLFPES(1)PAR;IPNSYEVLFPES(1)PAR ; 163.41 3.65E-08 65151000 66858 82031 75442 59677 98943 77091 94005 95791 59735 84832 TRUE FALSE FALSE 81730.33144 91623.81188 103351.1352 62937.0034 89091.88751 81127.36555 73920.0638 72298.10706 71723.26658 63684.94362 1.283354068 1.438704451 1.622850384 0.988255619 1.398947419 1.273886117 1.160714913 1.135246464 1.126220147 1 15.95866471 -6.667976103 0.375925579 0.996500712 1.449527703 0.409496404 0.146901393 1.402601603 0.469011232 0.171384473 0.228290052 2.15E-07 6.667976103 0.453026991 IPNSYEVLFPES(ph)PAR ddPTM_HeLa_A486_30min_R1 1 IPNSYEVLFPESPAR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 IPNSYEVLFPES(1)PAR 133.93 1.27E-05 53446000 33173 38628 33102 13268 43572 36989 36390 40900 29480 38672 TRUE FALSE FALSE 30847.74401 35566.9766 45919.9809 30888.57453 38106.79347 32425.67326 27284.83711 31587.96284 32035.35014 28988.27949 1.064145391 1.226943345 1.584087835 1.065553909 1.314558647 1.118578744 0.941236858 1.089680498 1.105113884 1 14.82318209 -6.454800489 4.77774167 1.039534347 1.256611359 0.340910398 0.142627493 0.260803816 11.47896511 0.052671094 0.045235872 3.51E-07 6.454800489 0.217077011 IPNYQLS(ph)PTKLPSINK ddPTM_HeLa_A485_30min_R1 1 IPNYQLSPTKLPSINK 16 1 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 IPNYQLS(0.999)PT(0.001)KLPSINK 220.62 4.40E-34 3533800000 703520 509420 383940 1015100 703190 620860 1090300 874240 526890 1259900 TRUE FALSE FALSE 860015.5969 568992.2376 525975.3831 1070552.343 633177.9346 653367.2696 857348.4981 659831.2692 632631.9901 945830.1167 0.909270684 0.601579742 0.556099212 1.131865357 0.669441503 0.690787128 0.906450834 0.697621336 0.668864291 1 19.85122155 -10.13564968 3.844983074 1.000101846 0.757346629 0.160070267 0.16549768 90231990.04 151446420.1 126544.0829 0.040764285 7.32E-11 10.13564968 -0.242755217 IPPMLS(ph)PVHVQDSTDLAPPS(ph)PEPPMLAPVAK ddPTM_HeLa_A485_30min_R1 2 IPPMLSPVHVQDSTDLAPPSPEPPMLAPVAK 31 0 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 2 0 IPPMLS(0.532)PVHVQDS(0.224)T(0.245)DLAPPS(1)PEPPMLAPVAK;IPPMLS(0.843)PVHVQDS(0.075)T(0.083)DLAPPS(1)PEPPMLAPVAK ; 112.14 7.51E-05 184630000 96124 117987 101143 113881 144758 118036 158437 169953 107238 151539 TRUE FALSE FALSE 117506.4522 131784.5533 138560.0046 120102.0307 130345.3852 124216.1824 124585.6406 128271.7603 128759.683 113763.1162 1.032904654 1.158411951 1.21796949 1.055720296 1.145761382 1.091884493 1.095132103 1.127533814 1.13182275 1 16.79567336 -10.74682088 2.415769864 0.97077783 1.1195246 0.330815003 0.050040341 9114784.448 6385161.698 1590672.445 0.012199564 1.79E-11 10.74682088 0.14874677 IPPMLS(ph)PVHVQDSTDLAPPS(ph)PEPPMLAPVAK ddPTM_HeLa_A486_30min_R1 2 IPPMLSPVHVQDSTDLAPPSPEPPMLAPVAK 31 0 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 2 0 IPPMLS(0.958)PVHVQDS(0.021)T(0.022)DLAPPS(1)PEPPMLAPVAK;IPPMLS(0.873)PVHVQDS(0.061)T(0.067)DLAPPS(1)PEPPMLAPVAK ; 97.718 0.00020128 226518000 110688 109841 81232 50267 116434 113598 131506 131503 89041 135638 TRUE FALSE FALSE 102929.3428 101136.7991 112687.2059 117024.1164 101829.762 99583.43374 98601.80787 101562.6376 96759.14557 101673.3619 1.012353096 0.99472268 1.108325757 1.150981084 1.00153826 0.979444683 0.969789982 0.99891098 0.951666629 1 16.63358222 -5.980464847 24.87226486 0.980506693 1.065919754 0.47602746 0.043172376 220.9243348 281280.7269 0.014661798 0.016622795 1.05E-06 5.980464847 0.085413062 IPQNPS(ph)PHTHQQQNAPVTVIQSK ddPTM_HeLa_A485_30min_R1 1 IPQNPSPHTHQQQNAPVTVIQSK 23 0 F8W108;F8WCU9;Q68CP9-3;Q68CP9 F8W108 ARID2 AT-rich interactive domain-containing protein 2 1 0 IPQNPS(0.781)PHT(0.219)HQQQNAPVTVIQSK 108.1 0.00015558 159600000 135290 146570 115650 146480 171420 151040 187260 222100 145660 196330 TRUE FALSE FALSE 165384.7938 163710.0865 158433.7476 154481.8315 154352.8229 158948.2208 147250.3712 167629.6268 174892.6259 147388.5442 1.122100735 1.110738202 1.074939362 1.048126449 1.047251153 1.078429953 0.999062526 1.137331451 1.186609359 1 17.16926487 -9.835659685 10.61973078 1.000000489 1.085577843 0.217713286 0.050372096 0 0 0.051574666 0.012508694 1.46E-10 9.835659685 0.085577354 IPRPLS(ph)LIGSTLR ddPTM_HeLa_A485_30min_R1 2 IPRPLSLIGSTLR 13 1 Q96BY6;H7C0I3;A0A2R8YD85;Q96BY6-3 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 IPRPLS(0.998)LIGS(0.001)T(0.001)LR;IPRPLS(1)LIGSTLR ; 134.82 6.10E-06 1042620000 276790 211209 217600 308820 275420 223301 218766 169323 195639 321940 TRUE FALSE FALSE 338360.9806 235908.0553 298099.2951 325690.0546 247998.2177 234992.6951 172024.8569 127796.2688 234901.9528 241686.2829 1.400000764 0.976092033 1.233414208 1.347573601 1.026116231 0.972304643 0.71176922 0.528769226 0.971929189 1 17.88277607 -6.294658071 1.943867013 0.77091108 1.214611681 0.551220773 0.169529944 0.243268786 1.807760462 0.068626777 0.061471099 5.07E-07 6.294658071 0.443700601 IPRPLS(ph)LIGSTLR ddPTM_HeLa_A486_30min_R1 2 IPRPLSLIGSTLR 13 1 Q96BY6;H7C0I3;A0A2R8YD85;Q96BY6-3 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 IPRPLS(1)LIGSTLR;IPRPLS(1)LIGSTLR ; 112.16 0.00013383 1034710000 162470 138453 93671 104811 134704 123379 135817 115693 75125 113262 TRUE FALSE FALSE 151081.692 127481.48 129942.9198 244005.3049 117808.1683 108157.7534 101834.1501 89352.22946 81636.89549 84900.45799 1.77951563 1.501540546 1.530532613 2.874016356 1.387603448 1.273936042 1.199453483 1.052435188 0.961560131 1 16.37348472 -5.988025224 24.99954743 1.131976678 1.89690682 0.529707141 0.365589983 199.1916849 415846.6628 0.118277019 0.134020916 1.03E-06 5.988025224 0.764930142 IPRPLS(ph)PTK ddPTM_HeLa_A485_30min_R1 4 IPRPLSPTK 9 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 IPRPLS(0.903)PT(0.097)K;IPRPLS(0.682)PT(0.318)K;IPRPLS(0.888)PT(0.112)K;IPRPLS(0.996)PT(0.004)K ;;; 98.407 0.0010632 11719920000 3789360 3675800 2904450 4745160 4457230 3939970 5612230 4927210 3437040 6210380 TRUE FALSE FALSE 4632290.059 4105652.835 3978926.919 5004376.075 4013452.531 4146260.737 4413131.213 3718804.022 4126822.402 4662246.56 0.993574664 0.88061684 0.853435542 1.073382974 0.860840901 0.889326784 0.946567531 0.797642075 0.885157477 1 22.15259387 IPRPLS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 IPRPLSPTK 9 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 IPRPLS(0.5)PT(0.5)K;IPRPLS(0.5)PT(0.5)K ; 114.72 0.00034709 5738970000 2698150 2686640 1503820 1187740 2614320 2839310 3431700 3334010 2014990 3530800 TRUE FALSE FALSE 2509023.618 2473740.862 2086139.378 2765118.745 2286407.608 2489024.8 2573052.363 2574928.704 2189650.956 2646664.698 0.947994515 0.934663489 0.788214457 1.04475597 0.86388261 0.940438281 0.972186754 0.9728957 0.827324654 1 21.335744 -5.26437227 24.99984145 0.942243964 0.894728093 0.111035496 0.071279793 664.6548312 5665509 0.019277964 0.030054338 5.44E-06 5.26437227 -0.04751587 IPRPLS(ph)PTKLLPFLSNPYR ddPTM_HeLa_A485_30min_R1 2 IPRPLSPTKLLPFLSNPYR 19 2 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 IPRPLS(0.99)PT(0.01)KLLPFLSNPYR;IPRPLS(0.75)PT(0.25)KLLPFLSNPYR ; 206.94 4.33E-26 396860000 118628 343020 160163 73350 368860 485380 627310 1281540 172321 153944 TRUE FALSE FALSE 145016.3893 383133.2051 219413.9586 77356.92477 332135.0033 510793.7463 493280.0938 967240.3056 206904.2441 115568.5939 1.254807941 3.315201752 1.898560424 0.669359401 2.87392095 4.419831798 4.268288443 8.369404461 1.790315492 1 16.81838987 -6.119147075 3.512870779 4.451159401 1.888615826 0.194695266 1.960383456 0.335815549 7.590597332 0.653199681 0.660824625 7.60E-07 6.119147075 -2.562543575 IPRPLS(ph)PTKLLPFLSNPYR ddPTM_HeLa_A486_30min_R1 2 IPRPLSPTKLLPFLSNPYR 19 2 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 IPRPLS(0.5)PT(0.5)KLLPFLSNPYR;IPRPLS(0.903)PT(0.097)KLLPFLSNPYR ; 181.69 2.05E-18 123285000 116635 75768 69599 68260 192585 76078 154784 172334 50231 155635 TRUE FALSE FALSE 108459.4888 69763.86774 96549.59673 158912.7297 168429.1935 66692.26986 116055.4061 133097.3102 54585.06352 116662.983 0.929682115 0.597994891 0.827594103 1.362152121 1.443724386 0.571666077 0.994792033 1.14087011 0.467886746 1 16.83198734 -10.2914824 13.05327805 1.000084236 0.939657258 0.003391424 0.310400998 4.49E-10 0 0.31034725 0.075270264 5.11E-11 10.2914824 -0.060426978 IPRPLSPT(ph)K ddPTM_HeLa_A486_30min_R1 2 IPRPLSPTK 9 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 IPRPLS(0.335)PT(0.665)K;IPRPLS(0.09)PT(0.91)K ; 106.67 0.0013047 7143910000 1264340 1312770 763650 590200 1265070 1453300 1738390 1681630 1012610 1884820 TRUE FALSE FALSE 1175716.295 1208741.324 1059355.731 1374015.427 1106393.124 1274006.622 1303426.435 1298759.559 1100383.85 1412848.804 0.832160024 0.855534804 0.749801202 0.972514131 0.78309379 0.901728917 0.922551961 0.919248794 0.778840487 1 20.43017565 -14 0.13934923 1.450368544 0.812542057 0.268087631 0.06925512 187.6162638 1.602905829 23.79197912 0.418871393 1.00E-14 14 -0.637826487 IPRPSVS(ph)QGCS(ph)R ddPTM_HeLa_A485_30min_R1 4 IPRPSVSQGCSR 12 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 IPRPS(0.001)VS(0.999)QGCS(1)R;IPRPS(0.074)VS(0.926)QGCS(1)R;IPRPS(0.002)VS(0.998)QGCS(1)R;IPRPS(0.004)VS(0.996)QGCS(1)R ;;; 74.618 0.01044 9896300000 2812060 3048230 3300160 2631300 4015340 2922150 3605770 3833590 3041510 3334420 TRUE FALSE FALSE 3437593.046 3404693.982 4521026.515 2775041.256 3615558.651 3075149.255 2835367.783 2893396.042 3651913.159 2503210.459 1.373273682 1.360130935 1.806091253 1.108592866 1.444368626 1.228482105 1.132692528 1.155874062 1.458891778 1 21.25534816 -5.721379309 1.384322966 1.209292136 1.475340921 0.25927895 0.190756138 0.596440221 2.384777698 0.071162756 0.103563358 1.90E-06 5.721379309 0.266048785 IPRPSVS(ph)QGCS(ph)R ddPTM_HeLa_A486_30min_R1 1 IPRPSVSQGCSR 12 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 IPRPS(0.001)VS(0.999)QGCS(1)R 81.854 0.0056049 2448000000 1090800 1462900 1266900 445660 1588100 1195800 1436700 1429200 1113200 1209400 TRUE FALSE FALSE 1014340.553 1346974.476 1757477.609 1037519.002 1388905.69 1048274.354 1077222.464 1103802.359 1209693.072 906558.3681 1.118891611 1.485811089 1.938625984 1.144459131 1.532064276 1.156323068 1.188254945 1.217574508 1.334379688 1 19.79004038 -6.266530512 24.61733603 1.193464119 1.457136251 0.253670447 0.225769512 524.6377658 2536789.828 0.078801189 0.071611174 5.41E-07 6.266530512 0.263672132 IPRPSVSQGCS(ph)R ddPTM_HeLa_A485_30min_R1 4 IPRPSVSQGCSR 12 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 IPRPSVSQGCS(1)R;IPRPSVS(0.001)QGCS(0.998)R;IPRPSVSQGCS(1)R;IPRPSVSQGCS(1)R ;;; 109.1 0.00022203 2532990000 681506 1053890 1081440 892190 1203750 1027950 1084060 1297880 1150920 1286870 TRUE FALSE FALSE 833104.6585 1177133.268 1481509.658 940928.0806 1083900.423 1081771.872 852441.725 979572.895 1381899.087 966076.9921 0.862358451 1.218467345 1.533531665 0.973968005 1.121960705 1.119757412 0.882374523 1.013969801 1.43042335 1 19.88177864 IPRPSVSQGCS(ph)R ddPTM_HeLa_A486_30min_R1 3 IPRPSVSQGCSR 12 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 IPRPSVS(0.001)QGCS(0.999)R;IPRPS(0.005)VS(0.024)QGCS(0.97)R;IPRPSVSQGCS(1)R ;; 101.01 0.00047099 1761800000 1042790 1062820 972380 372656 1275650 1077700 1120170 1184390 996280 1306940 TRUE FALSE FALSE 969695.806 978598.2725 1348911.577 867562.001 1115646.082 944744.3313 839891.618 914730.2521 1082638.353 979673.7172 0.989815067 0.998902242 1.376898812 0.885562188 1.138793521 0.964345899 0.8573177 0.933709087 1.105100947 1 19.90194181 -6.286351012 20.54048793 0.960777757 1.079515431 0.133379776 0.133390506 161.2702183 132970.2757 0.046739585 0.041266599 5.17E-07 6.286351012 0.118737674 IPS(ph)AKK ddPTM_HeLa_A486_30min_R1 1 IPSAKK 6 1 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 IPS(1)AKK 48.283 0.036326 269830000 845960 402600 302270 534990 301460 1246400 920300 863490 646480 1321200 TRUE FALSE FALSE 786662.5725 370696.5098 419317.0391 1245483.757 263648.0758 1092631.84 690031.2061 666892.1769 702517.4069 990362.9204 0.794317473 0.374303704 0.423397353 1.257603381 0.266213597 1.103264084 0.696745801 0.673381609 0.709353503 1 19.91759777 IPS(ph)PIGFTPGPQQLLGDPFQGMR ddPTM_HeLa_A485_30min_R1 2 IPSPIGFTPGPQQLLGDPFQGMR 23 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7;H7C0J7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 IPS(1)PIGFTPGPQQLLGDPFQGMR;IPS(0.998)PIGFT(0.002)PGPQQLLGDPFQGMR ; 184.02 6.00E-21 296460000 150956 197941 191768 173380 249392 201265 253490 256624 183071 237642 TRUE FALSE FALSE 184535.6414 221088.4781 262710.9633 182851.3104 224561.6568 211802.9242 199329.7907 193686.5616 219811.6705 178402.2229 1.03437972 1.23926975 1.472576738 1.024938521 1.258737998 1.187221329 1.117305533 1.085673477 1.232112846 1 17.44477407 -9.043354449 0.290269148 0.944683285 1.226274326 0.162190529 0.124958697 10.78279029 1.351253391 0.863705703 0.169645769 9.05E-10 9.043354449 0.281591041 IPS(ph)PIGFTPGPQQLLGDPFQGMR ddPTM_HeLa_A486_30min_R1 2 IPSPIGFTPGPQQLLGDPFQGMR 23 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7;H7C0J7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 IPS(1)PIGFTPGPQQLLGDPFQGMR;IPS(0.974)PIGFT(0.026)PGPQQLLGDPFQGMR ; 226.9 2.02E-38 332400000 186812 217607 174603 82756 256900 194834 226041 240868 181530 228890 TRUE FALSE FALSE 173717.4435 200363.0288 242213.9576 192660.1503 224677.2065 170797.362 169483.151 186027.6145 197265.1666 171574.4542 1.012490142 1.167790565 1.411713409 1.122895312 1.309502674 0.995470817 0.987811104 1.084238417 1.149735067 1 17.38847524 -6.27243843 24.77309984 1.045238479 1.209754202 0.352886141 0.109186809 762.6334432 1717669.823 0.039111624 0.034830075 5.34E-07 6.27243843 0.164515722 IPS(ph)PNILK ddPTM_HeLa_A485_30min_R1 4 IPSPNILK 8 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK ;;; 113.93 0.0010499 3054780000 1235870 1388900 1149800 1606560 1785600 1533940 2051750 2123180 1316760 2055340 TRUE FALSE FALSE 1510785.018 1551319.773 1575158.867 1694322.305 1607819.394 1614254.726 1613376.851 1602466.776 1581021.654 1542981.564 0.979133551 1.005403959 1.020853978 1.098083311 1.042021131 1.046191843 1.045622896 1.038552121 1.024653626 1 20.55728939 -4.757883348 2.663722639 1.044619319 0.986136788 0.410028619 0.023753672 0.247349371 3.466975125 0.006356338 0.020107135 1.75E-05 4.757883348 -0.058482532 IPS(ph)PNILK ddPTM_HeLa_A486_30min_R1 5 IPSPNILK 8 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK;IPS(1)PNILK ;;;; 123.51 0.00063545 3464600000 4417440 4941300 3151420 1879360 5030350 4900340 5890660 5735860 3988920 5739590 TRUE FALSE FALSE 4107800.268 4549733.392 4371734.222 4375245.058 4399396.597 4295785.874 4416754.563 4429929.891 4334682.797 4302359.306 0.954778524 1.05749731 1.016124854 1.01694088 1.022554437 0.998472133 1.02658896 1.029651309 1.007512969 1 22.03669658 -4.238120416 24.54523479 1.019886284 0.95477843 0.592360751 0.016099513 3755.223706 3952624.832 0.003842813 0.22182516 5.78E-05 4.238120416 -0.065107854 IPS(ph)TPK ddPTM_HeLa_A485_30min_R1 3 IPSTPK 6 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 IPS(0.988)T(0.012)PK;IPS(0.956)T(0.044)PK;IPS(0.966)T(0.034)PK ;; 73.248 0.026309 1122100000 2478480 2093360 1711390 2862770 2595440 2277020 2933480 2773920 1990290 3269160 TRUE FALSE FALSE 3029809.325 2338160.242 2344504.378 3019155.876 2337028.88 2396241.246 2306718.034 2093611.771 2389722.947 2454218.576 1.234531168 0.952710677 0.955295669 1.230190296 0.952249691 0.97637646 0.939899183 0.853066549 0.973720503 1 21.22683231 -5.957281343 24.9999702 0.941709737 1.075539521 0.343563026 0.096034282 174.5834935 102169.6107 0.029746802 0.03372968 1.10E-06 5.957281343 0.133829783 IPS(ph)TPK ddPTM_HeLa_A486_30min_R1 4 IPSTPK 6 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 IPS(0.988)T(0.012)PK;IPS(0.991)T(0.009)PK;IPS(0.979)T(0.021)PK;IPS(0.984)T(0.016)PK ;;; 84.568 0.01829 1440550000 3922640 3993660 2186510 1825040 3811880 4787180 5418700 5790800 3216670 5920900 TRUE FALSE FALSE 3647683.193 3677187.837 3033185.229 4248785.352 3333758.466 4196586.404 4062883.947 4472361.252 3495493.546 4438268.101 0.821870853 0.828518637 0.683416405 0.957307052 0.751139496 0.945545945 0.915421028 1.007681634 0.78758053 1 22.08156539 -6.275350881 24.61172753 0.930736888 0.810888857 0.339269197 0.085647194 771.0383666 1364088.719 0.028601189 0.025356275 5.30E-07 6.275350881 -0.119848032 IPSIVS(ph)SPLNSPLDR ddPTM_HeLa_A485_30min_R1 1 IPSIVSSPLNSPLDR 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 IPSIVS(0.603)S(0.397)PLNSPLDR 132.05 1.85E-05 0 83497 89159 95092 80124 109730 90317 92009 93707 88409 89124 TRUE FALSE FALSE 102070.6196 99585.36947 130270.4879 84500.97124 98804.89591 95045.85846 72350.52551 70725.21132 106151.8754 66907.02701 1.525559036 1.488414206 1.94703746 1.262961082 1.47674916 1.42056616 1.081359145 1.057067015 1.586557946 1 16.02987012 -6.080969011 1.070106993 1.193629063 1.609690931 0.377217446 0.217486521 0.546802262 1.328391741 0.108737822 0.117257911 8.30E-07 6.080969011 0.416061869 IPSIVS(ph)SPLNSPLDR ddPTM_HeLa_A486_30min_R1 1 IPSIVSSPLNSPLDR 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 IPS(0.012)IVS(0.548)S(0.44)PLNSPLDR 68.283 0.010826 167710000 159380 176500 121670 78837 169960 165640 197840 200290 132820 207600 TRUE FALSE FALSE 148208.285 162513.4972 168783.8824 183536.5202 148642.032 145205.0209 148338.3395 154688.3393 144332.9445 155615.6088 0.952399867 1.044326456 1.08462052 1.179422307 0.955187164 0.933100619 0.953235608 0.994041283 0.927496578 1 17.24762725 -5.876126687 20.48416881 0.958449206 1.065423446 0.456989636 0.055872622 2.308966558 402.0665534 0.018001468 0.020411803 1.33E-06 5.876126687 0.10697424 IPSIVSS(ph)PLNSPLDR ddPTM_HeLa_A486_30min_R1 1 IPSIVSSPLNSPLDR 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 IPSIVS(0.278)S(0.722)PLNSPLDR 140.96 7.61E-06 0 93577 116520 84637 25218 108840 83747 88729 83541 94695 83292 TRUE FALSE FALSE 87017.73553 107286.5308 117410.7131 58708.77845 95188.27231 73415.14662 66528.06572 64520.53799 102903.2388 62435.14106 1.393730102 1.718367718 1.880522908 0.940316262 1.524594494 1.175862589 1.065554824 1.033401013 1.64816219 1 15.93007065 -5.25724678 24.9989363 1.206795293 1.66962299 0.438289651 0.241561494 333.9610576 1991279.834 0.064712479 0.107154403 5.53E-06 5.25724678 0.462827697 IPSLGWS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 IPSLGWSPSK 10 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IPSLGWS(1)PSK;IPSLGWS(1)PSK ; 192.99 3.82E-10 4033400000 2257340 1277360 1443310 3964200 2927510 1408230 2691110 1779950 1994640 5273600 TRUE FALSE FALSE 2759477.495 1426736.14 1977250.43 4180754.208 2636036.825 1481962.745 2116132.364 1343414.472 2394945.952 3958988.573 0.697015777 0.360378949 0.499433225 1.05601573 0.665835927 0.374328624 0.53451338 0.339332748 0.604938839 1 21.91670047 -10.42297967 2.91389027 1.009049254 0.56544759 0.290973446 0.201153427 40130957.6 46651800.77 2997764.51 0.053383235 3.78E-11 10.42297967 -0.443601663 IPSLGWS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 IPSLGWSPSK 10 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IPSLGWS(1)PSK;IPSLGWS(1)PSK ; 180.47 1.59E-09 6938700000 1192810 2168430 1412130 1145300 2273340 2516070 3105800 2762980 1731870 2327630 TRUE FALSE FALSE 1109200.179 1996595.71 1958944.554 2666316.28 1988196.499 2205662.865 2328695.99 2133909.769 1881989.886 1744776.298 0.635726299 1.144327621 1.122748261 1.528170851 1.139513703 1.26415224 1.334667369 1.223027716 1.078642511 1 20.73461065 -4.136151275 1.981314473 1.235014552 0.311038798 0.595489436 0.140549738 0.746787154 2.376627602 0.036330066 1.399789784 7.31E-05 4.136151275 -0.923975754 IPSTENSSQEISVEERT(ph)PTK ddPTM_HeLa_A485_30min_R1 4 IPSTENSSQEISVEERTPTK 20 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 IPSTENSSQEISVEERT(0.999)PT(0.001)K;IPSTENSSQEIS(0.001)VEERT(0.997)PT(0.003)K;IPSTENSSQEIS(0.001)VEERT(0.995)PT(0.004)K;IPSTENSSQEIS(0.001)VEERT(0.998)PT(0.001)K ;;; 117.08 1.55E-05 1483240000 647258 600922 555267 909070 885140 780145 1045710 983250 690341 1230940 TRUE FALSE FALSE 791238.3091 671194.6006 760683.3699 958730.1922 797012.3537 820992.1859 822285.5158 742106.3958 828886.1065 924089.3118 0.856235754 0.726330877 0.823170834 1.037486507 0.862484117 0.888433808 0.88983338 0.803067827 0.896976186 1 19.81767277 -13.85984598 0.017133498 2.046633792 8.65E-07 0.229350352 0.07514165 7582.578123 10.03947933 770.7691036 464.2744902 1.38E-14 13.85984598 -2.046632927 IPSTENSSQEISVEERT(ph)PTK ddPTM_HeLa_A486_30min_R1 2 IPSTENSSQEISVEERTPTK 20 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 IPSTENSSQEISVEERT(1)PTK;IPSTENSSQEISVEERT(0.981)PT(0.019)K ; 144.44 2.65E-09 717720000 411430 390910 288130 237640 469140 492010 632910 569940 336630 564150 TRUE FALSE FALSE 382590.8816 359932.8679 399701.6524 553237.9297 410296.0866 431310.8086 474549.2238 440177.1037 365809.3594 422883.168 0.904720052 0.851140209 0.945182222 1.308252424 0.970235085 1.019929005 1.122175721 1.040895304 0.865036462 1 18.68989961 -5.009650909 24.89000399 1.053316989 0.882987846 0.287987241 0.108482293 522.1492855 1346651.763 0.028828995 0.055064283 9.78E-06 5.009650909 -0.170329144 IPTHLFTFIQFK ddPTM_HeLa_A485_30min_R1 2 IPTHLFTFIQFK 12 0 P10155-3;P10155-5;P10155-4;P10155;P10155-2;H0Y9N5 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 0 ; ; 180.24 1.75E-09 94900000 148726 138568 129711 175505 176992 131412 200091 173857 94645 256800 FALSE FALSE TRUE 181809.5856 154772.3222 177696.4966 185092.3937 159370.055 138292.5291 157339.9233 131218.2982 113639.3834 192784.4861 0.943071662 0.802825608 0.921736496 0.960100045 0.826674689 0.717342624 0.816144112 0.680647602 0.589463321 1 17.55662943 -6.022537494 4.528817401 0.745568334 0.90064304 0.286491918 0.107062322 0.246288268 12.47986687 0.034388426 0.036332907 9.49E-07 6.022537494 0.155074705 IPTHLFTFIQFK ddPTM_HeLa_A486_30min_R1 2 IPTHLFTFIQFK 12 0 P10155-3;P10155-5;P10155-4;P10155;P10155-2;H0Y9N5 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 0 ; ; 212.09 7.49E-21 87804000 101508 152114 115569 67260 157245 144107 189890 169017 135808 201651 FALSE FALSE TRUE 94392.81339 140059.9327 160320.4118 156584.6791 137521.8658 126328.5435 142377.5135 130535.5187 147579.9468 151156.2771 0.624471674 0.926590251 1.060626889 1.035912515 0.909799239 0.835747916 0.9419226 0.863579874 0.97634018 1 17.20568137 -4.266166946 5.240974872 0.947839844 0.611612924 0.679270706 0.067240774 0.096027471 9.195372668 0.018411153 0.116240375 5.42E-05 4.266166946 -0.33622692 IPTYNT(ph)PLK ddPTM_HeLa_A485_30min_R1 2 IPTYNTPLK 9 0 Q02241;H7BYN4 Q02241 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 IPT(0.008)YNT(0.991)PLK;IPTYNT(1)PLK ; 110.64 0.0044093 260210000 538030 421010 376240 650840 562150 420340 581880 465300 424400 835560 TRUE FALSE FALSE 657712.9173 470243.4572 515426.8327 686393.7412 506180.3722 442348.3524 457556.5845 351184.4454 509573.1872 627270.2693 1.048531948 0.74966642 0.82169817 1.09425518 0.806957379 0.705195789 0.729440891 0.559861455 0.812366235 1 19.25872766 -5.993275027 24.91303625 0.73455824 0.913439534 0.231080419 0.139320884 220.1710319 815628.077 0.042325421 0.047878505 1.02E-06 5.993275027 0.178881294 IPTYNT(ph)PLK ddPTM_HeLa_A486_30min_R1 2 IPTYNTPLK 9 0 Q02241;H7BYN4 Q02241 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 IPTYNT(1)PLK;IPTYNT(1)PLK ; 124.39 0.0014852 294960000 601630 678540 435530 267480 580150 672230 750700 754530 527210 707630 TRUE FALSE FALSE 559458.8438 624770.0192 604178.8799 622706.9577 507382.1773 589297.0973 562866.9199 582739.9903 572908.9873 530434.8421 1.054717374 1.177844986 1.139025629 1.173955608 0.956540063 1.110969813 1.061142435 1.098608055 1.080074199 1 19.01681602 -5.716592919 24.99999059 1.059635558 1.139535832 0.371963697 0.053484553 148.0981193 82557.61543 0.015224852 0.019655115 1.92E-06 5.716592919 0.079900274 IPVEGPLS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 IPVEGPLSPSR 11 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 IPVEGPLS(0.5)PS(0.5)R 69.578 0.01387 190720000 1194400 1705400 2152600 108240 2380800 1150300 878930 1249500 1495800 338720 TRUE FALSE FALSE 1110678.728 1570257.893 2986144.369 251988.1901 2082177.864 1008387.681 659012.4176 965016.1264 1625457.148 253902.3073 4.374433378 6.184496351 11.76099737 0.992461206 8.200704775 3.97155777 2.595535364 3.800737916 6.401899871 1 17.95391398 -6.149224123 1.132610418 3.587130814 6.638831477 0.163334055 2.892540852 0.931942402 2.49897586 1.427063091 1.429525009 7.09E-07 6.149224123 3.051700663 IPVEGPLS(ph)PSRGDFPK ddPTM_HeLa_A485_30min_R1 3 IPVEGPLSPSRGDFPK 16 1 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 IPVEGPLS(0.964)PS(0.036)RGDFPK;IPVEGPLS(0.985)PS(0.015)RGDFPK;IPVEGPLS(1)PSRGDFPK ;; 217.97 5.28E-34 1003537000 1180290 1447390 1115830 1318020 1706680 1724050 2385540 2704800 1242960 1885120 TRUE FALSE FALSE 1442841.439 1616649.67 1528621.951 1390020.095 1536756.947 1814318.592 1875849.891 2041443.559 1492410.671 1415194.277 1.019535948 1.142351758 1.080149896 0.982211501 1.08589822 1.282027932 1.325506979 1.442518241 1.054562398 1 20.43256869 -6.211571828 5.731284253 1.255123875 1.061551666 0.262697081 0.127042504 0.239013385 18.78218834 0.041397435 0.040963247 6.14E-07 6.211571828 -0.193572208 IPVEGPLS(ph)PSRGDFPK ddPTM_HeLa_A486_30min_R1 2 IPVEGPLSPSRGDFPK 16 1 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 IPVEGPLS(0.953)PS(0.047)RGDFPK;IPVEGPLS(0.999)PS(0.001)RGDFPK ; 183.65 4.93E-18 812320000 1358950 1209190 788370 527200 1528420 1264400 1672290 1587140 973580 1703770 TRUE FALSE FALSE 1263694.623 1113369.381 1093647.977 1227348.243 1336711.312 1108411.183 1253865.354 1225782.869 1057970.698 1277134.902 0.989476226 0.871771164 0.856329253 0.961016914 1.046648486 0.867888883 0.981779882 0.959791222 0.82839385 1 20.28447949 -5.294405861 24.84320898 0.949694428 0.902450081 0.080084297 0.067259361 1441.863803 1086570.175 0.018837537 0.027942568 5.08E-06 5.294405861 -0.047244348 IPWFQYPIIYDIR ddPTM_HeLa_A485_30min_R1 1 IPWFQYPIIYDIR 13 0 Q99623-2;Q99623;F5H0C5;F5GY37;J3KPX7 Q99623-2 PHB2 Prohibitin-2 0 0 131.43 0.00044175 13043000 2967.4 3841 4662.1 3075.9 4522.5 4062.5 6450.2 5844.8 2909 5118.8 FALSE FALSE TRUE 3627.487893 4290.171538 6386.804796 3243.928628 4072.224021 4275.206218 5072.062077 4411.353636 3492.809617 3842.777365 0.943975554 1.116424693 1.662028317 0.844162521 1.059708548 1.112530291 1.319894856 1.147959722 0.908928435 1 11.90793368 -7.750322911 21.83627836 0.954464317 1.157826931 0.121751387 0.210295119 86.32117405 169575.9919 0.147505161 0.05420088 1.78E-08 7.750322911 0.203362614 IPWFQYPIIYDIR ddPTM_HeLa_A486_30min_R1 2 IPWFQYPIIYDIR 13 0 Q99623-2;Q99623;F5H0C5;F5GY37;J3KPX7 Q99623-2 PHB2 Prohibitin-2 0 0 ; ; 154.15 2.79E-05 32135000 34800 46605 50153 23756.3 62191 47306 63127 64889 51871 60554 FALSE FALSE TRUE 32360.69971 42911.85007 69573.58474 55305.86698 54390.42487 41469.86669 47331.95691 50115.19122 56367.22004 45390.88426 0.71293389 0.945384757 1.532765574 1.218435549 1.198267576 0.91361663 1.042763491 1.104080523 1.241818065 1 15.47011497 -4.526246372 24.99980061 1.157018557 0.771046472 0.43149119 0.160307005 79.97089207 593674.4393 0.043238578 0.11566191 2.98E-05 4.526246372 -0.385972084 IPYQS(ph)PVSSSESAPGTIMNGHGGGR ddPTM_HeLa_A485_30min_R1 2 IPYQSPVSSSESAPGTIMNGHGGGR 25 0 Q5T6F2;H0YDN2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 IPYQS(0.967)PVS(0.022)S(0.006)S(0.006)ESAPGTIMNGHGGGR;IPYQS(0.996)PVS(0.004)SSESAPGTIMNGHGGGR ; 191.98 7.49E-21 2854500000 416860 453220 598950 402040 653500 353930 501520 462140 512260 545510 TRUE FALSE FALSE 509589.0689 506220.1365 820526.5294 424002.4272 588435.2454 372461.2275 394366.155 348799.4404 615065.8833 409524.3964 1.244343618 1.236117167 2.003608422 1.03535328 1.436874703 0.909497043 0.962985743 0.851718343 1.501902912 1 18.64358987 -5.969104413 1.823566039 1.037935472 1.434941839 0.236188836 0.292739959 0.48640969 3.283738961 0.1082298 0.121955977 1.07E-06 5.969104413 0.397006367 IPYQS(ph)PVSSSESAPGTIMNGHGGGR ddPTM_HeLa_A486_30min_R1 5 IPYQSPVSSSESAPGTIMNGHGGGR 25 0 Q5T6F2;H0YDN2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 IPYQS(0.986)PVS(0.014)SSESAPGTIMNGHGGGR;IPYQS(0.608)PVS(0.329)S(0.032)S(0.032)ESAPGTIMNGHGGGR;IPYQS(0.987)PVS(0.012)SSESAPGTIMNGHGGGR;IPYQS(0.998)PVS(0.001)SSESAPGTIMNGHGGGR;IPYQS(0.992)PVS(0.001)S(0.003)S(0.003)ESAPGTIMNGHGGGR ;;;; 252.81 1.69E-61 3790850000 505834 665187 531237 128218.3 695791 523867 598074 583720 502811 462740 TRUE FALSE FALSE 470377.6487 612475.1596 736946.1934 298498.6822 608518.4048 459237.6158 448429.5594 450819.6985 546395.0623 346866.8921 1.356075369 1.765735426 2.124579227 0.860556856 1.754328299 1.323959208 1.292800119 1.299690771 1.575229792 1 18.40402262 -9.408587272 0.067047232 3.58E-19 2.363911485 0.194316378 0.321490522 141.8150246 2.390860783 54.89587419 30.12700734 3.90E-10 9.408587272 2.363911485 IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVK ddPTM_HeLa_A485_30min_R1 6 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVK 43 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 0 IQALGLHLPDPPLES(0.94)EDEDEEGAT(0.053)ALNNHS(0.003)S(0.003)IPMDPEHVELVK;IQALGLHLPDPPLES(0.79)EDEDEEGAT(0.151)ALNNHS(0.03)S(0.03)IPMDPEHVELVK;IQALGLHLPDPPLES(0.999)EDEDEEGAT(0.001)ALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(0.25)EDEDEEGAT(0.25)ALNNHS(0.25)S(0.25)IPMDPEHVELVK;IQALGLHLPDPPLES(0.965)EDEDEEGAT(0.035)ALNNHSSIPMDPEHVELVK ;;;;; 166.5 2.75E-16 3290056000 156082 267636 281999 80712.5 386878 190475 251577 226640 278084 187103.3 TRUE FALSE FALSE 190801.9024 298933.7021 386322.1651 85121.6195 348359.0679 200447.9765 197825.5188 171056.1846 333892.9081 140461.8907 1.358389108 2.128219267 2.750369963 0.606012201 2.480096674 1.427063067 1.408392823 1.217812061 2.377106747 1 17.09981923 -5.242060669 24.98200697 1.545117181 2.083915238 0.150864941 0.62110682 1658.686509 2138287.995 0.161944705 0.279950605 5.73E-06 5.242060669 0.538798056 IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVK ddPTM_HeLa_A486_30min_R1 5 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVK 43 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 0 IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVK;IQALGLHLPDPPLES(0.25)EDEDEEGAT(0.25)ALNNHS(0.25)S(0.25)IPMDPEHVELVK;IQALGLHLPDPPLES(0.827)EDEDEEGAT(0.16)ALNNHS(0.006)S(0.006)IPMDPEHVELVK;IQALGLHLPDPPLES(0.25)EDEDEEGAT(0.25)ALNNHS(0.25)S(0.25)IPMDPEHVELVK;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVK ;;;; 161.03 3.73E-16 2923404000 254501 277894 257494.6 24249.2 334267 190799 203180 200724 280703.7 69621.2 TRUE FALSE FALSE 236661.7941 255872.6674 357203.4051 56453.36309 292340.1159 167260.1593 152342.215 155023.527 305035.3227 52187.59836 4.534828227 4.902940074 6.844603244 1.08173905 5.601716215 3.204979047 2.919126761 2.970505098 5.844977203 1 15.67141939 -5.245512313 24.99069386 3.398560574 5.375005249 0.280089815 1.596829125 1150.860471 1805778.968 0.412615164 0.711709013 5.68E-06 5.245512313 1.976444675 IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVKR ddPTM_HeLa_A485_30min_R1 7 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVKR 44 1 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 0 IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVKR;IQALGLHLPDPPLES(0.92)EDEDEEGAT(0.061)ALNNHS(0.015)S(0.004)IPMDPEHVELVKR;IQALGLHLPDPPLES(0.983)EDEDEEGAT(0.017)ALNNHSSIPMDPEHVELVKR;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVKR;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVKR;IQALGLHLPDPPLES(0.751)EDEDEEGAT(0.115)ALNNHS(0.115)S(0.019)IPMDPEHVELVKR;IQALGLHLPDPPLES(0.98)EDEDEEGAT(0.019)ALNNHSS(0.001)IPMDPEHVELVKR ;;;;;; 233.1 3.94E-42 3576880000 370347 988097 772012 142995.1 1242341 705967 949387 1324375 641926 342010 TRUE FALSE FALSE 452729.4125 1103646.349 1057611.365 150806.5602 1118649.168 742930.3405 746542.7117 999569.9547 770754.6601 256753.2012 1.76328634 4.29847162 4.119174989 0.58736 4.356904461 2.893558238 2.907627668 3.89311584 3.001928141 1 17.97002274 -8.053468536 21.64923444 0.99999999 3.141144837 0.233989884 1.134707916 4800.230894 1943596.586 1.053881123 0.272110938 8.84E-09 8.053468536 2.141144846 IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVKR ddPTM_HeLa_A486_30min_R1 4 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVKR 44 1 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 0 IQALGLHLPDPPLES(0.304)EDEDEEGAT(0.087)ALNNHS(0.304)S(0.304)IPMDPEHVELVKR;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVKR;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVKR;IQALGLHLPDPPLES(1)EDEDEEGATALNNHSSIPMDPEHVELVKR ;;; 163.13 2.29E-16 1012000000 335360 282531 298220 49900 544012 191189 294802 309526 253223 106700 TRUE FALSE FALSE 311852.9958 260142.2146 413698.7706 116169.7218 475776.9422 167602.045 221039.4215 239053.6867 275172.5735 79981.6255 3.899057988 3.252524726 5.172422641 1.452455124 5.948578055 2.095506862 2.763627522 2.988857568 3.440447375 1 16.28738098 -9.3972173 0.248092277 4.86E-13 4.011626862 0.282093885 1.2378371 12.9722181 1.04286267 13.94488345 2.205185186 4.01E-10 9.3972173 4.011626862 IQAQFGPLAQLS(ph)PQER ddPTM_HeLa_A485_30min_R1 1 IQAQFGPLAQLSPQER 16 0 P51692 P51692 STAT5B Signal transducer and activator of transcription 5B 1 0 IQAQFGPLAQLS(1)PQER 178.14 1.33E-13 71712000 25472 36393 47390 39661 65262 33462 46859 48346 37366 64126 TRUE FALSE FALSE 31138.15852 40648.84477 64921.53306 41827.58 58764.28613 35214.01858 36847.19185 36489.0677 44865.01346 48140.56835 0.646817426 0.844378165 1.348582605 0.868863444 1.220681187 0.731483233 0.765408326 0.757969192 0.931958533 1 15.55496555 -6.301724464 24.99995783 0.817739713 0.99165543 0.11823355 0.198883793 1043.017283 647268.2969 0.070875417 0.062506904 4.99E-07 6.301724464 0.173915717 IQAQFGPLAQLS(ph)PQER ddPTM_HeLa_A486_30min_R1 2 IQAQFGPLAQLSPQER 16 0 P51692 P51692 STAT5B Signal transducer and activator of transcription 5B 1 0 IQAQFGPLAQLS(1)PQER;IQAQFGPLAQLS(1)PQER ; 144.97 7.91E-08 83220000 53732 65717 60046 21735.6 66948 49956 61143 69398 58143 70933 TRUE FALSE FALSE 49965.66427 60509.34558 83297.41929 50601.57526 58550.75757 43792.93664 45844.3747 53597.59035 63182.88205 53170.9151 0.939717968 1.138015877 1.566597436 0.95167772 1.101180175 0.823625784 0.862207743 1.008024598 1.188297812 1 15.69834968 IQASTMAFK ddPTM_HeLa_A485_30min_R1 2 IQASTMAFK 9 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ; ; 166.09 7.37E-06 94107000 132130 121246 128688 150795 172963 160089 196470 199407 129636 200758 FALSE FALSE TRUE 161521.8627 135424.665 176295.0464 159032.549 155742.1964 168471.0125 154492.5795 150502.1206 155652.7561 150712.7253 1.071720137 0.898561583 1.169742276 1.055203194 1.033371244 1.117828718 1.025079861 0.998602608 1.032777795 1 17.20144171 -6.985351494 24.81821126 1.011782345 1.055794514 0.098389197 0.065623659 561.3736261 951104.3386 0.027402558 0.018465327 1.03E-07 6.985351494 0.04401217 IQDPTEDAEAEDT(ph)PR ddPTM_HeLa_A485_30min_R1 4 IQDPTEDAEAEDTPR 15 0 O96028;O96028-5;O96028-3;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR ;;; 224.86 4.80E-33 2758330000 689772 957697 951670 759438 1172430 937984 1076740 1190120 939212 1029364 TRUE FALSE FALSE 843209.4017 1069691.333 1303732.335 800924.1749 1055698.753 987095.3918 846685.7028 898241.204 1127703.233 772762.4988 1.091162424 1.384243328 1.687106112 1.036442861 1.366136108 1.277359335 1.095660962 1.162376804 1.45931413 1 19.55966556 -5.292239642 24.99448331 1.212225189 1.387178235 0.169186944 0.189363626 1252.612327 1016495.241 0.052987236 0.078602794 5.10E-06 5.292239642 0.174953045 IQDPTEDAEAEDT(ph)PR ddPTM_HeLa_A486_30min_R1 3 IQDPTEDAEAEDTPR 15 0 O96028;O96028-5;O96028-3;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR ;; 310.9 3.62E-77 2591130000 1105590 1256200 1117970 370800 1453010 1094020 1283750 1260290 1112710 1143090 TRUE FALSE FALSE 1028093.85 1156654.137 1550877.924 863241.1392 1270759.937 959050.9356 962542.1719 973349.4789 1209160.599 856852.8237 1.199848821 1.349886591 1.809970022 1.007455557 1.483055085 1.119271489 1.123345976 1.135958769 1.411164864 1 19.7086879 -5.921975932 1.348921421 1.170591974 1.404353624 0.161107444 0.219025902 0.786536246 2.981168374 0.089227944 0.107993815 1.20E-06 5.921975932 0.233761651 IQEAGTEVVK(ac)AK ddPTM_HeLa_A485_30min_R1 1 IQEAGTEVVKAK 12 1 P40926;P40926-2;G3XAL0 P40926 MDH2 "Malate dehydrogenase, mitochondrial;Malate dehydrogenase" 0 1 IQEAGTEVVK(1)AK 144.47 0.0011004 7357500 9490.1 8946.9 8861.4 10077 13752 11922 14240 14098 9235.4 15960 FALSE TRUE FALSE 11601.14 9993.162127 12139.60061 10627.48099 12382.80259 12546.21749 11197.50767 10640.4434 11088.86007 11981.46572 0.968257163 0.834051723 1.013198293 0.886993398 1.033496475 1.047135449 0.934569103 0.888075269 0.92550113 1 13.54851679 -4.771389929 24.99945971 0.963470601 0.901154425 0.148084208 0.062069665 365.9208004 919334.8951 0.01674802 0.035547526 1.69E-05 4.771389929 -0.062316176 IQEIIEQLDVTTSEYEKEK ddPTM_HeLa_A485_30min_R1 2 IQEIIEQLDVTTSEYEKEK 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 164.94 2.66E-12 41598000 32086 22308.6 29663 67113 69634 44739 88008 94408 44297 123817 FALSE FALSE TRUE 39223.42 24917.39671 40636.57808 70779.21325 62700.99446 47081.46486 69204.37184 71254.28997 53187.00158 92951.70058 0.421976357 0.268068218 0.437179501 0.761462273 0.67455457 0.506515368 0.744519696 0.76657328 0.572200414 1 16.50419364 -5.305933942 0.174755632 1.026714301 2.50E-18 0.627623619 0.124434216 8.722531603 0.419454621 0.508989885 2.148939467 4.94E-06 5.305933942 -1.026714301 IQEIIEQLDVTTSEYEKEK ddPTM_HeLa_A486_30min_R1 1 IQEIIEQLDVTTSEYEKEK 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 69.737 0.0073065 19271000 830.23 1393.2 1016.2 1181.4 1226.3 783.88 1587.9 1283.8 0 2048.5 FALSE FALSE TRUE 772.0351643 1282.797758 1409.699855 2750.358905 1072.486019 687.1728555 1190.590625 991.5067652 0 1535.542267 0.502776889 0.835403744 0.918046924 1.791132009 0.698441223 0.447511521 0.775355163 0.645704639 0 1 10.58453251 -5.984481422 24.9964196 0.565151303 1.024068883 0.225138237 0.384703701 360.9837511 581448.4154 0.121767956 0.138030515 1.04E-06 5.984481422 0.45891758 IQEIIEQLDVTTSEYEKEK(ac)LNER ddPTM_HeLa_A485_30min_R1 1 IQEIIEQLDVTTSEYEKEKLNER 23 2 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 IQEIIEQLDVTTSEYEK(0.004)EK(0.996)LNER 134.31 5.12E-09 10840000 3327 1827.2 3755.6 4923.3 5950 4804.2 7769.1 8164.3 4220.2 9533 FALSE TRUE FALSE 4067.079672 2040.875145 5144.952724 5192.247413 5357.597108 5055.740483 6109.168317 6161.992624 5067.15543 7156.598542 0.568297865 0.285173904 0.718910345 0.725518888 0.748623397 0.706444612 0.853641333 0.861022536 0.708039636 1 12.80505834 -4.09849208 0.299910618 0.915902362 3.70E-19 0.604412297 0.114143801 5.773768246 0.39434382 0.128223564 1.983393374 7.97E-05 4.09849208 -0.915902362 IQEIIEQLDVTTSEYEKEK(ac)LNER ddPTM_HeLa_A486_30min_R1 1 IQEIIEQLDVTTSEYEKEKLNER 23 2 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 IQEIIEQLDVTTSEYEK(0.011)EK(0.989)LNER 120.33 2.57E-08 7886900 5503.6 6449.9 5675.5 4345.2 9713.3 7889.3 10682 11937 7565.4 7803 FALSE TRUE FALSE 5117.826061 5938.786434 7873.205595 10115.84519 8494.967341 6915.998379 8009.250617 9219.205683 8221.174963 5849.078011 0.874979963 1.01533719 1.346059256 1.729476881 1.452360069 1.182408298 1.369318481 1.576181009 1.405550575 1 12.51399352 -4.724800308 3.471181169 1.414194916 0.908913785 0.464853229 0.188968488 0.185290651 4.531118822 0.049878906 0.14497159 1.88E-05 4.724800308 -0.505281132 IQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_HeLa_A485_30min_R1 5 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 2 0 IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER ;;;; 265.96 3.82E-58 5917620000 2145540 2449270 2547530 2474890 3053130 2546110 3076940 3041240 2439920 3073860 TRUE FALSE FALSE 2622807.971 2735690.821 3489967.359 2610086.974 2749149.657 2679420.383 2419526.633 2295371.122 2929589.564 2307603.272 1.136593973 1.185511762 1.512377539 1.131081328 1.191344149 1.161126964 1.048501994 0.994699197 1.269537792 1 21.13796378 -6.104422403 1.421438685 1.082569294 1.259775472 0.260412192 0.122966542 0.571717108 2.346898232 0.053762178 0.055247424 7.86E-07 6.104422403 0.177206178 IQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_HeLa_A486_30min_R1 5 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 2 0 IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(0.971)S(0.879)GEEDS(0.149)DLSPEER;IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER;IQEQES(1)S(1)GEEDSDLSPEER ;;;; 246.67 1.31E-45 6552240000 2344650 2711340 2334570 909606 3135490 2630450 2907640 2831800 2374970 2627460 TRUE FALSE FALSE 2180302.143 2496483.544 3238578.026 2117608.737 2742207.607 2305931.823 2180117.718 2187060.958 2580834.312 1969526.914 1.107018202 1.267554927 1.644343118 1.075186494 1.392317915 1.170804931 1.106924563 1.110449896 1.310382861 1 20.9094177 -6.415926381 6.305972608 1.140837647 1.302116851 0.1905011 0.163321597 0.427293241 21.65222055 0.057565817 0.050480332 3.84E-07 6.415926381 0.161279204 IQEQES(ph)SGEEDSDLSPEER ddPTM_HeLa_A485_30min_R1 1 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 1 0 IQEQES(0.693)S(0.307)GEEDSDLSPEER 249.14 3.61E-46 196040000 57240 78133 80928 65285 87585 79199 90827 90304 76503 93478 TRUE FALSE FALSE 69972.84052 87269.97468 110866.6349 68851.35424 78864.72987 83345.73718 71421.06946 68156.80241 91856.45037 70175.65494 0.997109904 1.243593305 1.579844677 0.981128773 1.123818936 1.187673093 1.017747102 0.97123144 1.308950383 1 16.098683 IQEQES(ph)SGEEDSDLSPEER ddPTM_HeLa_A486_30min_R1 2 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 1 0 IQEQES(0.5)S(0.5)GEEDSDLSPEER;IQEQES(0.5)S(0.5)GEEDSDLSPEER ; 325.11 1.51E-90 673590000 251963 275880 241960 89857 344070 283400 302760 316530 238325 292268 TRUE FALSE FALSE 234301.6948 254018.2641 335653.3919 209191.6371 300913.5323 248436.9894 227006.2457 244463.0288 258983.2029 219082.1905 1.069469382 1.159465603 1.532088899 0.954854599 1.373518914 1.133989892 1.036169326 1.11585076 1.182128051 1 17.74111268 -6.509782387 24.22153531 1.092032435 1.221105508 0.144836103 0.154239503 854.0721472 1579601.303 0.054316459 0.045738453 3.09E-07 6.509782387 0.129073073 IQEQESS(ph)GEEDSDLSPEER ddPTM_HeLa_A485_30min_R1 1 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 1 0 IQEQES(0.085)S(0.915)GEEDSDLSPEER 316.54 1.10E-89 151820000 99372 132960 139100 133370 170370 120110 160230 163770 133340 172060 TRUE FALSE FALSE 121476.9586 148508.5154 190558.8784 140655.6654 153407.3646 126398.7739 125995.5515 123605.1507 160100.1149 129168.6085 0.940452637 1.14972606 1.475272364 1.088930716 1.187652065 0.978556441 0.975434767 0.956928716 1.239466127 1 16.97889597 -6.252428468 23.79297029 1.023970103 1.180001719 0.182981004 0.144832083 562.9071311 1486333.569 0.049402156 0.048656907 5.59E-07 6.252428468 0.156031615 IQEQESS(ph)GEEDSDLSPEER ddPTM_HeLa_A486_30min_R1 2 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 1 0 IQEQES(0.115)S(0.885)GEEDSDLSPEER;IQEQES(0.23)S(0.77)GEEDSDLSPEER ; 342.94 1.04E-102 431690000 413828 524120 422742 172102 590550 545210 560440 544440 450880 560770 TRUE FALSE FALSE 384820.7942 482586.8224 586439.0238 400662.1536 516477.7123 477947.5335 420211.9843 420482.897 489962.6414 420349.542 0.915478086 1.148060778 1.395122309 0.953164244 1.228686274 1.137024038 0.999672754 1.000317248 1.165607649 1 18.68122998 -6.743337246 23.13152552 1.04142589 1.138983747 0.092095291 0.133713826 237.4729843 303450.495 0.050899099 0.039316203 1.81E-07 6.743337246 0.097557857 IQEQSTS(ph)PDTSLGSTTPSSHTLELVALDSEVLR ddPTM_HeLa_A485_30min_R1 1 IQEQSTSPDTSLGSTTPSSHTLELVALDSEVLR 33 0 A0A5F9ZGW8;A0A494C0H4;H0Y9M2;Q17R98-2;Q17R98 A0A5F9ZGW8 ZNF827 Zinc finger protein 827 1 0 IQEQS(0.032)T(0.159)S(0.808)PDT(0.001)S(0.001)LGSTTPSSHTLELVALDSEVLR 143.09 1.72E-09 81959000 20855 36077 38699 14048 40993 27658 33486 42143 28326 23858 TRUE FALSE FALSE 25494.1228 40295.89132 53015.3705 14815.40667 36911.59298 29106.13011 26331.44254 31807.36317 34010.76838 17910.63967 1.423406604 2.249829825 2.959993136 0.827184676 2.060875192 1.625074852 1.470156456 1.775892082 1.898914221 1 14.12852924 -5.261045588 24.99979811 1.579428813 2.214951795 0.282479081 0.497085483 49.33928526 3132192.353 0.134974835 0.216358837 5.48E-06 5.261045588 0.635522982 IQESEVFRVTS(ph)TEFISLRIDSSDEDR ddPTM_HeLa_A485_30min_R1 2 IQESEVFRVTSTEFISLRIDSSDEDR 26 2 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2;C9J1Z6;C9JW66;O43426-5 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 IQES(0.018)EVFRVT(0.018)S(0.193)T(0.193)EFIS(0.193)LRIDS(0.193)S(0.193)DEDR;IQES(0.063)EVFRVT(0.063)S(0.226)T(0.162)EFIS(0.162)LRIDS(0.162)S(0.162)DEDR ; 48.226 0.020237 1328640000 198311 242869 221278 177165 205926 190865 201799 157182 149902 206438 TRUE FALSE FALSE 242424.5978 271270.4169 303137.9403 186843.0753 185423.2844 200858.3963 158682.9951 118632.868 179985.9564 154976.8058 1.564263739 1.750393651 1.956021346 1.205619605 1.196458292 1.296054563 1.023914477 0.76548789 1.161373507 1 17.24169279 -5.3867546 4.588861365 1.080606843 1.753300906 0.784931886 0.160193069 0.109072666 3.583758221 0.050023636 0.07549574 4.10E-06 5.3867546 0.672694063 IQESEVFRVTS(ph)TEFISLRIDSSDEDR ddPTM_HeLa_A486_30min_R1 2 IQESEVFRVTSTEFISLRIDSSDEDR 26 2 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2;C9J1Z6;C9JW66;O43426-5 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 IQES(0.042)EVFRVT(0.042)S(0.183)T(0.183)EFIS(0.183)LRIDS(0.183)S(0.183)DEDR;IQES(0.033)EVFRVT(0.033)S(0.335)T(0.335)EFIS(0.088)LRIDS(0.088)S(0.088)DEDR ; 53.895 0.015421 1126440000 117260 114100 83263 38476 116860 103590 124080 107210 115580 130480 TRUE FALSE FALSE 109040.6795 105058.3005 115504.6635 89574.07247 102202.3291 90810.11903 93033.87162 82800.62338 125598.5675 97806.95872 1.114856049 1.074139323 1.180945251 0.915825148 1.04493924 0.928462762 0.951198901 0.846571905 1.284147561 1 16.57764949 -5.259194087 24.98642894 0.986858724 1.118396118 0.208250622 0.11279103 296.9851746 3304938.448 0.029814015 0.048616961 5.51E-06 5.259194087 0.131537395 IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_HeLa_A485_30min_R1 2 IQFTSLYHKEEAPASPLRPLYPQISPLK 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 0 IQFTSLYHKEEAPAS(1)PLRPLY(0.001)PQIS(1)PLK;IQFTSLYHKEEAPAS(0.936)PLRPLY(0.064)PQIS(1)PLK ; 94.45 0.0012926 2071370000 407530 430540 307950 282030 758820 558930 890160 938620 363450 586090 TRUE FALSE FALSE 498183.6425 480887.9078 421873.5199 297436.5848 683269.2164 588194.7105 699970.0441 708421.9733 436391.0812 439988.5492 1.132265018 1.092955507 0.958828407 0.676009831 1.552924997 1.336840951 1.590882411 1.610091841 0.991823724 1 18.74710645 -5.773061771 24.99987658 1.389275358 0.973711407 0.378764599 0.235933372 213.7389135 459753.0093 0.072378052 0.082744777 1.69E-06 5.773061771 -0.415563951 IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 IQFTSLYHKEEAPASPLRPLYPQISPLK 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 2 0 IQFTSLYHKEEAPAS(1)PLRPLYPQIS(1)PLK;IQFTSLYHKEEAPAS(1)PLRPLYPQIS(1)PLK ; 176.71 6.47E-15 2727970000 619220 681840 471120 82820 972230 788400 1230260 1135000 699370 572770 TRUE FALSE FALSE 575815.8757 627808.5152 653550.281 192809.1455 850283.8477 691135.2239 922435.9356 876585.2769 759991.9547 429344.6639 1.341150651 1.462248324 1.522204271 0.449077773 1.980422535 1.609744529 2.148474205 2.041682011 1.770120881 1 18.71177674 IQFTSLYHKEEAPAS(ph)PLRPLYPQISPLK ddPTM_HeLa_A485_30min_R1 1 IQFTSLYHKEEAPASPLRPLYPQISPLK 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 0 IQFTSLYHKEEAPAS(1)PLRPLYPQISPLK 137.35 8.21E-07 1125400000 322850 399360 272380 146860 599750 425450 608260 821910 317980 329320 TRUE FALSE FALSE 394666.8687 446061.678 373144.6967 154882.5899 540036.7842 447725.9041 478300.282 620335.2838 381795.6693 247226.5847 1.596377142 1.80426259 1.509322701 0.62648032 2.184379907 1.810994172 1.934663631 2.509177096 1.544314782 1 17.91547436 IQFTSLYHKEEAPAS(ph)PLRPLYPQISPLK ddPTM_HeLa_A486_30min_R1 2 IQFTSLYHKEEAPASPLRPLYPQISPLK 28 2 P85037;P85037-2;U3KQ26 P85037 FOXK1 Forkhead box protein K1 1 0 IQFTSLYHKEEAPAS(1)PLRPLYPQISPLK;IQFTSLYHKEEAPAS(1)PLRPLYPQISPLK ; 314.33 5.06E-109 2810240000 1855240 2270800 1718730 173428 3386000 2118630 2753930 2687200 2172800 1193420 TRUE FALSE FALSE 1725197.256 2090853.538 2384268.285 403749.1486 2961296.307 1857254.971 2064867.586 2075383.221 2361140.053 894579.8641 1.928499987 2.337246367 2.665238042 0.451328232 3.31026488 2.076119803 2.308198148 2.319952979 2.639384306 1 19.77085076 IQFVEGPVEPGKPT(ph)SPEHVVYEGETVTR ddPTM_HeLa_A485_30min_R1 2 IQFVEGPVEPGKPTSPEHVVYEGETVTR 28 1 Q9H7C4-2;Q9H7C4;C9JTN4;C9JSS1 Q9H7C4-2 SYNC Syncoilin 1 0 IQFVEGPVEPGKPT(0.5)S(0.5)PEHVVYEGETVTR;IQFVEGPVEPGKPT(0.5)S(0.5)PEHVVYEGETVTR ; 102.58 0.00084035 1269960000 240864 206591 169130 280500 264490 216036 308810 282360 219846 365440 TRUE FALSE FALSE 294443.3658 230750.0203 231698.2251 295823.0047 238156.4469 227347.3109 242830.2208 213110.7673 263967.0757 274342.5334 1.073269107 0.841101879 0.844558159 1.078297999 0.868098883 0.828698737 0.885135155 0.776805421 0.962180645 1 18.06561879 IQFVEGPVEPGKPT(ph)SPEHVVYEGETVTR ddPTM_HeLa_A486_30min_R1 1 IQFVEGPVEPGKPTSPEHVVYEGETVTR 28 1 Q9H7C4-2;Q9H7C4;C9JTN4;C9JSS1 Q9H7C4-2 SYNC Syncoilin 1 0 IQFVEGPVEPGKPT(0.5)S(0.5)PEHVVYEGETVTR 128.42 6.56E-06 852700000 318010 353510 199950 142430 295210 375020 410870 440180 296890 491930 TRUE FALSE FALSE 295719.1412 325496.5801 277375.9948 331584.238 258182.0091 328753.8453 308065.9803 339960.6231 322624.6642 368747.5261 0.801955594 0.882708512 0.752211134 0.899217526 0.700159298 0.891541833 0.835438772 0.921933299 0.874920214 1 18.49227384 -7.899715197 0.631625871 0.997591125 0.814430186 0.449604875 0.061036772 0.682120651 0.646742181 0.0576776 0.025153997 1.26E-08 7.899715197 -0.183160939 IQFVEGPVEPGKPTS(ph)PEHVVYEGETVTR ddPTM_HeLa_A486_30min_R1 1 IQFVEGPVEPGKPTSPEHVVYEGETVTR 28 1 Q9H7C4-2;Q9H7C4;C9JTN4;C9JSS1 Q9H7C4-2 SYNC Syncoilin 1 0 IQFVEGPVEPGKPT(0.116)S(0.884)PEHVVYEGETVTR 227.77 6.00E-39 451820000 285390 275830 149230 109400 260900 304920 316850 290030 243980 322550 TRUE FALSE FALSE 265385.6348 253972.2262 207015.8525 254688.7288 228175.4892 267302.0706 237570.7787 223996.5003 265128.3828 241781.3806 1.097626435 1.050420945 0.856210896 1.053384376 0.943726472 1.105552752 0.982585086 0.926442308 1.096562449 1 17.88334362 IQIISTDSAVAS(ph)PQR ddPTM_HeLa_A485_30min_R1 5 IQIISTDSAVASPQR 15 0 P49116;P49116-2;C9JKS0;C9JMI6;C9J2Y1 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR;IQIISTDS(0.009)AVAS(0.991)PQR ;;;; 303.07 1.23E-67 1919813000 407427 514362 505874 468575 631639 498373 644802 776549 529981 617824 TRUE FALSE FALSE 498057.7305 574512.1615 693017.8438 494172.0658 568750.8033 524467.0396 507034.7852 586099.1402 636343.3254 463811.847 1.073835724 1.238675047 1.494178832 1.065458049 1.22625329 1.130775428 1.093190673 1.263657114 1.371985924 1 18.82318015 IQIISTDSAVAS(ph)PQR ddPTM_HeLa_A486_30min_R1 4 IQIISTDSAVASPQR 15 0 P49116;P49116-2;C9JKS0;C9JMI6;C9J2Y1 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR ;;; 325.94 2.54E-79 1373810000 637420 743740 628030 228772 746780 616450 723730 681160 553629 743000 TRUE FALSE FALSE 592740.1496 684803.3337 871220.0352 532592.7775 653111.889 540398.6666 542645.0992 526074.7376 601618.0075 556947.9639 1.064264865 1.229564301 1.564275465 0.956270266 1.172662316 0.970285739 0.974319208 0.944567126 1.080205058 1 19.08718302 -5.304892978 24.9988502 1.014865105 1.280388314 0.475460729 0.130874423 394.6841299 227060.9421 0.037210295 0.055192219 4.96E-06 5.304892978 0.26552321 IQILEGWKK ddPTM_HeLa_A485_30min_R1 1 IQILEGWKK 9 1 B4DLR8;P15559-3;P15559-2;P15559;H3BNV2;H3BRK3 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 98.943 0.00087744 0 180010 207750 158940 195890 252550 262020 315510 358670 198050 260390 FALSE FALSE TRUE 220052.6035 232044.5553 217738.52 206590.9747 227405.2352 275738.962 248098.711 270705.6201 237796.8184 195479.5651 1.12570643 1.18705275 1.113868449 1.056841796 1.163319732 1.410576916 1.269179778 1.38482823 1.216479166 1 17.57665827 -6.019922383 23.60244059 1.281727639 1.123218175 0.243027666 0.109357866 424.2223814 502584.4047 0.033704619 0.034192842 9.55E-07 6.019922383 -0.158509465 IQILEGWKK ddPTM_HeLa_A486_30min_R1 2 IQILEGWKK 9 1 B4DLR8;P15559-3;P15559-2;P15559;H3BNV2;H3BRK3 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 ; ; 103.22 0.00078048 0 354373 317452 200631 161917 398787 295671 358970 347027 213589 382813 FALSE FALSE TRUE 329533.2827 292295.9474 278320.6963 376950.9588 348767.4159 259194.1182 269151.9092 268016.5276 232103.0665 286954.1331 1.14838312 1.018615568 0.96991353 1.313627912 1.215411718 0.903259749 0.937961431 0.934004765 0.808850752 1 18.13046063 -6.274671765 24.71158813 0.91401225 1.127778474 0.541309084 0.09951068 590.0669248 1101951.038 0.037687103 0.033439945 5.31E-07 6.274671765 0.213766224 IQIVTAVDASGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 IQIVTAVDASGSPK 14 0 P49116;P49116-2;C9JKS0;C9JMI6 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIVTAVDAS(0.044)GS(0.956)PK;IQIVTAVDAS(0.01)GS(0.99)PK ; 132.59 1.59E-05 248028000 175862 167740 124808 284140 221050 193116 290830 288940 142307 356780 TRUE FALSE FALSE 214981.8952 187355.7339 170979.6729 299661.8487 199041.4858 203227.2551 228691.7946 218077.012 170866.7096 267841.312 0.802646513 0.699502748 0.63836184 1.118803692 0.743132134 0.75875993 0.853833163 0.814202299 0.637940086 1 18.03101897 -11.36847834 2.304293216 2.490510468 0.789063034 0.195438017 0.130513808 9419076.474 838902.2928 73771436 0.032768939 4.28E-12 11.36847834 -1.701447433 IQIVTAVDASGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 IQIVTAVDASGSPK 14 0 P49116;P49116-2;C9JKS0;C9JMI6 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIVTAVDASGS(1)PK;IQIVTAVDAS(0.013)GS(0.987)PK ; 191.36 8.74E-18 424690000 290230 269630 152105 282610 253280 326790 476330 387090 231380 595150 TRUE FALSE FALSE 269886.3757 248263.5368 211004.1295 657930.3623 221511.2607 286473.9724 357147.1959 298958.0571 251436.2047 446120.5662 0.604962865 0.556494265 0.472975571 1.47478151 0.496527794 0.642144734 0.800562052 0.670128391 0.563605948 1 18.76707413 -11.44234255 2.053845641 3.392059784 0.704710705 0.097475671 0.274986658 9930060.738 742679.9201 110569169.5 0.068650255 3.61E-12 11.44234255 -2.68734908 IQKSISQK(ac)K ddPTM_HeLa_A485_30min_R1 1 IQKSISQKK 9 2 O75446 O75446 SAP30 Histone deacetylase complex subunit SAP30 0 1 IQKSISQK(1)K 77.677 0.030775 0 9651.1 10537 8125.8 12006 15108 19032 25428 33266 22231 31572 FALSE TRUE FALSE 11797.9539 11769.21049 11131.87156 12661.85738 13603.79447 20028.48609 19995.10007 25107.46134 26692.55779 23701.68144 0.497768647 0.496555931 0.469665901 0.534217685 0.573959046 0.84502385 0.843615257 1.0593114 1.126188361 1 14.53270179 -6.537248157 1.038995436 1.075862171 0.481300241 0.956444897 0.051171195 0.094586631 0.209507428 0.032476375 0.02263445 2.90E-07 6.537248157 -0.59456193 down IQLLCLMEMTFTRPANHR ddPTM_HeLa_A485_30min_R1 2 IQLLCLMEMTFTRPANHR 18 1 E9PL38;A0A087WUL9;Q9UNM6;Q9UNM6-2 E9PL38 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 ; ; 150.28 5.11E-10 19491300 9532.2 9149.5 10387.9 9677.3 12829.9 6903.8 10733.6 9503.5 7827.1 13161.3 FALSE FALSE TRUE 11652.605 10219.45443 14230.81649 10205.94639 11552.51011 7265.272293 8440.278675 7172.751724 9397.927176 9880.430126 1.179362118 1.034312708 1.440303338 1.032945557 1.169231497 0.735319434 0.854242029 0.725955412 0.951165795 1 13.27035813 -6.250063224 24.18937787 0.836265344 1.170890438 0.592112908 0.131541927 315.1180857 670042.7765 0.041899447 0.041514034 5.62E-07 6.250063224 0.334625094 IQLLCLMEMTFTRPANHR ddPTM_HeLa_A486_30min_R1 2 IQLLCLMEMTFTRPANHR 18 1 E9PL38;A0A087WUL9;Q9UNM6;Q9UNM6-2 E9PL38 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 ; ; 149.09 6.13E-10 27509000 10493.4 10938.8 9400.8 4618.4 13096.3 9615.5 13692 11636.4 9723.7 11159.2 FALSE FALSE TRUE 9757.866848 10071.96965 13041.04152 10751.8686 11453.63994 8429.237373 10266.11678 8987.045741 10566.55815 8364.863686 1.166530288 1.204080548 1.559026185 1.285360886 1.369256017 1.007695725 1.227290386 1.074380418 1.263207452 1 13.03012631 -6.24801587 24.75204182 1.126212043 1.322290529 0.388937545 0.126291285 767.4347727 1415098.075 0.041782477 0.041543677 5.65E-07 6.24801587 0.196078486 IQLLVFK ddPTM_HeLa_A485_30min_R1 1 IQLLVFK 7 0 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 143.46 0.0035713 7377500 15653 17069 17756 21844 26507 19167 22396 19552 16176 27514 FALSE FALSE TRUE 19134.95585 19065.07107 24324.68329 23037.28241 23867.87001 20170.55448 17610.91164 14756.84134 19422.37482 20655.26616 0.926395995 0.923012607 1.17765044 1.115322467 1.155534372 0.976533264 0.852611218 0.714434819 0.940311041 1 14.33422203 -6.602973209 3.829113577 0.853841353 1.062277912 0.390760067 0.105594457 0.221903376 6.374797286 0.044476708 0.033925821 2.49E-07 6.602973209 0.208436559 IQLLVFK ddPTM_HeLa_A486_30min_R1 2 IQLLVFK 7 0 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 ; ; 143.46 0.0035713 25411000 45222 52795 38308 20329.7 56963 53850 58102 55035 46500 59711 FALSE FALSE TRUE 42052.17133 48611.33192 53141.88352 47328.56901 49818.16938 47206.53451 43564.26506 42504.73191 50530.65744 44758.97695 0.939524855 1.086068879 1.187289951 1.057409535 1.113031905 1.054683054 0.973307882 0.949635912 1.128950233 1 15.44988944 -6.554221217 7.0919908 1.009149699 1.082468983 0.14438921 0.072292561 0.336626853 55.37047321 0.027841583 0.021714463 2.79E-07 6.554221217 0.073319284 IQNS(ph)DDEER ddPTM_HeLa_A485_30min_R1 2 IQNSDDEER 9 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 IQNS(1)DDEER;IQNS(1)DDEER ; 174.29 3.21E-06 2021380000 3165000 3554600 2765000 2985900 2221720 2517710 2395580 2088890 2340440 3534700 TRUE FALSE FALSE 3869043.331 3970279.549 3787888.561 3149012.156 2000517.756 2649533.402 1883744.763 1576586.452 2810144.84 2653564.341 1.458055217 1.496206249 1.427471911 1.186710308 0.753898341 0.998480934 0.709892251 0.594139146 1.059007613 1 21.3395001 -5.517753549 2.461842768 0.830135585 1.469649242 0.79238495 0.139683948 0.120673656 1.465492322 0.04321324 0.064783515 3.04E-06 5.517753549 0.639513657 IQNS(ph)DDEER ddPTM_HeLa_A486_30min_R1 2 IQNSDDEER 9 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 IQNS(1)DDEER;IQNS(1)DDEER ; 176.97 1.15E-06 1799270000 2541900 2694800 1823740 486280 1957320 2320300 1950830 1686660 2530600 2574100 TRUE FALSE FALSE 2363725.936 2481254.234 2529940.969 1132084.415 1711814.674 2034044.977 1462711.7 1302644.338 2749954.446 1929528.605 1.225027672 1.28593804 1.311170491 0.586715539 0.887167295 1.05416679 0.758066865 0.675110145 1.425194961 1 20.879817 -5.229326404 24.91469438 0.897240633 1.275234781 0.361183173 0.219792272 660.6786693 512583.5097 0.058311674 0.100987892 5.90E-06 5.229326404 0.377994148 IQNWHEEHR ddPTM_HeLa_A485_30min_R1 5 IQNWHEEHR 9 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4 A0A2R8Y7M3 RDX Radixin 0 0 ;;;; ;;;; 147.75 0.00016718 889079000 144518.5 191268 164948 179557 197329 203046 222531 215865 175046 248508 FALSE FALSE TRUE 176666.1417 213635.1288 225969.1293 189365.7442 177682.2319 213677.1746 174985.4339 162923.7703 210176.1266 186559.5291 0.946969274 1.145131154 1.211244102 1.015041929 0.95241574 1.145356529 0.937960311 0.873307148 1.126590143 1 17.50927653 -5.488431876 24.03521126 1.001407772 1.106787618 0.158929158 0.098566074 650.9559129 454201.7122 0.027845405 0.041271585 3.25E-06 5.488431876 0.105379845 IQNWHEEHR ddPTM_HeLa_A486_30min_R1 4 IQNWHEEHR 9 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4 A0A2R8Y7M3 RDX Radixin 0 0 ;;; ;;; 123.86 0.00061024 556606000 163631 165607 146921 58237.6 202901 169246 179668 179217 162764 176066 FALSE FALSE TRUE 152161.3119 152483.6982 203812.7459 135580.076 177451.2646 148366.1493 134713.1661 138413.2014 176872.5146 131977.9276 1.152929999 1.155372728 1.544294183 1.027293567 1.344552592 1.124173958 1.020724969 1.048760228 1.340167388 1 17.00993714 -6.427428205 7.959863529 1.101728924 1.244129497 0.16683889 0.154912672 0.559833372 41.84521312 0.053524786 0.047089542 3.74E-07 6.427428205 0.142400573 IQPAGNTS(ph)PR ddPTM_HeLa_A485_30min_R1 7 IQPAGNTSPR 10 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IQPAGNT(0.074)S(0.926)PR;IQPAGNT(0.487)S(0.513)PR;IQPAGNTS(1)PR;IQPAGNT(0.001)S(0.999)PR;IQPAGNT(0.048)S(0.952)PR;IQPAGNT(0.001)S(0.999)PR;IQPAGNT(0.051)S(0.949)PR ;;;;;; 145.09 5.44E-06 18354710000 13421780 20280680 18659620 15343660 22141240 18653340 21325270 24080230 17745350 20750130 TRUE FALSE FALSE 16407408.66 22652329.11 25562589.93 16181845.29 19936780.4 19630000.04 16768951.85 18174515.84 21306678.98 15577504.47 1.053275811 1.454169322 1.640993908 1.038795741 1.279844306 1.2601505 1.076485125 1.166715495 1.36778513 1 23.89296079 -5.28148456 24.97809994 1.18135519 1.38994871 0.241428957 0.171926312 1135.947913 1415491.053 0.04822841 0.07163528 5.23E-06 5.28148456 0.208593521 IQPAGNTS(ph)PR ddPTM_HeLa_A486_30min_R1 7 IQPAGNTSPR 10 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IQPAGNT(0.132)S(0.868)PR;IQPAGNT(0.003)S(0.997)PR;IQPAGNT(0.026)S(0.974)PR;IQPAGNTS(1)PR;IQPAGNTS(1)PR;IQPAGNT(0.002)S(0.998)PR;IQPAGNT(0.009)S(0.991)PR ;;;;;; 151.13 3.48E-06 17128600000 18083330 19744710 16789260 5715490 21494850 15743240 18346660 18995430 16002550 18459090 TRUE FALSE FALSE 16815781.95 18180067.27 23290511.1 13305949.56 18798765.48 13800999.11 13756131.62 14670585.26 17389663.92 13836813.72 1.215292935 1.313891163 1.683227915 0.961633931 1.358605086 0.997411644 0.994169026 1.060257481 1.256767944 1 23.72200843 -5.281232371 24.96164825 1.095707441 1.395112777 0.438180621 0.162899552 748.099949 943453.7567 0.04575453 0.067968356 5.23E-06 5.281232371 0.299405335 IQPEDMFVCDINEKDISGPS(ph)PSKK ddPTM_HeLa_A485_30min_R1 1 IQPEDMFVCDINEKDISGPSPSKK 24 2 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 IQPEDMFVCDINEKDIS(0.001)GPS(0.953)PS(0.047)KK 176.87 2.74E-15 407060000 202560 102800 69766 350090 341980 280280 641640 694240 168880 588830 TRUE FALSE FALSE 247618.7732 114821.5658 95575.34661 369214.5302 307931.2704 294955.0274 504548.3723 523976.5515 202772.6669 442045.5176 0.560165782 0.259750549 0.21621155 0.835240977 0.696605345 0.667250352 1.141394612 1.185345243 0.458714451 1 18.75383541 -5.272133173 23.19763059 0.860177099 0.336813428 0.521211307 0.223720443 207.2963911 449680.2344 0.064826624 0.097460713 5.34E-06 5.272133173 -0.52336367 IQPEDMFVCDINEKDISGPS(ph)PSKK ddPTM_HeLa_A486_30min_R1 1 IQPEDMFVCDINEKDISGPSPSKK 24 2 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 IQPEDMFVCDINEKDIS(0.046)GPS(0.743)PS(0.211)KK 104.91 0.00017246 583390000 142760 144680 56522 233950 209480 255400 469500 419490 109490 364190 TRUE FALSE FALSE 132753.2612 133215.0299 78408.83211 544647.4232 183205.0651 223891.3447 352026.1341 323981.2844 118980.6814 272994.4535 0.486285562 0.487977057 0.287217675 1.99508604 0.671094459 0.820131478 1.289499217 1.186768743 0.435835526 1 18.05851211 IQPEEKPVEVS(ph)PAVTK ddPTM_HeLa_A485_30min_R1 2 IQPEEKPVEVSPAVTK 16 1 Q8N0X7 Q8N0X7 SPG20 Spartin 1 0 IQPEEKPVEVS(1)PAVTK;IQPEEKPVEVS(1)PAVTK ; 169.85 1.88E-12 881440000 602040 406970 275240 827800 694850 573780 812620 801850 443900 1076510 TRUE FALSE FALSE 735961.721 454561.6013 377062.7297 873020.6179 625668.2942 603822.2336 638997.0985 605195.0302 532986.6583 808155.8687 0.91066804 0.562467735 0.466571789 1.080262672 0.774192601 0.747160612 0.790685465 0.74885929 0.659509729 1 19.62427405 -11.19684844 2.29353267 1.716177858 0.74680394 0.178528716 0.161510505 7646684.3 1521194.061 28454374.55 0.040710485 6.36E-12 11.19684844 -0.969373918 IQPEEKPVEVS(ph)PAVTK ddPTM_HeLa_A486_30min_R1 1 IQPEEKPVEVSPAVTK 16 1 Q8N0X7 Q8N0X7 SPG20 Spartin 1 0 IQPEEKPVEVS(1)PAVTK 93.006 0.00043444 477890000 298190 255300 106370 148650 247970 338890 388670 371900 210540 434780 TRUE FALSE FALSE 277288.4209 235069.0982 147559.3127 346064.7124 216867.2904 297081.1974 291420.6551 287226.4885 228789.7767 325908.2581 0.850817413 0.721273832 0.452763344 1.061847019 0.665424349 0.911548542 0.894180027 0.881310864 0.702006688 1 18.31410638 -5.266707637 24.9978692 0.862559001 0.679583764 0.281446696 0.14474216 593.3445411 2815420.186 0.039315245 0.060309673 5.41E-06 5.266707637 -0.182975237 IQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_HeLa_A485_30min_R1 6 IQPQPPDEDGDHSDKEDEQPQVVVLK 26 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK ;;;;; 244.72 7.41E-50 16339570000 2464638 1706575 1148660 4654079 2682019 2376211 4050186 3672837 1851363 5848040 TRUE FALSE FALSE 3012888.22 1906144.101 1573597.134 4908319.551 2414987.771 2500625.734 3184830.674 2772067.967 2222914.572 4390231.253 0.686270961 0.434178518 0.358431491 1.118009341 0.550082133 0.569588614 0.725435744 0.631417301 0.506332 1 22.0658655 -11.18093836 2.215922653 1.953189335 0.621364156 0.251411152 0.196714921 10576315.97 2116049.293 50602296.66 0.049247353 6.59E-12 11.18093836 -1.331825179 IQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_HeLa_A486_30min_R1 7 IQPQPPDEDGDHSDKEDEQPQVVVLK 26 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK ;;;;;; 222.92 1.64E-38 14953740000 2634460 2667740 1174783 2223820 2355560 3427010 4388480 3994070 2078270 5503140 TRUE FALSE FALSE 2449797.958 2456338.567 1629690.439 5177165.346 2060103.7 3004220.349 3290435.887 3084707.451 2258416.117 4125117.925 0.593873437 0.595458993 0.395065176 1.255034508 0.499404802 0.728275023 0.797658624 0.747786489 0.547479165 1 21.97600393 -14 0.179635654 2.165854259 0.631848501 0.143846177 0.224140882 280.7847598 2.700386206 118.5093539 0.698233079 1.00E-14 14 -1.534005758 IQPQPPDEDGDHS(ph)DKEDEQPQVVVLKK ddPTM_HeLa_A486_30min_R1 2 IQPQPPDEDGDHSDKEDEQPQVVVLKK 27 2 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 IQPQPPDEDGDHS(1)DKEDEQPQVVVLKK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLKK ; 325.88 3.11E-110 1999470000 1284760 944270 334561 972360 921290 1297010 1939980 1769620 703530 2577500 TRUE FALSE FALSE 1194704.959 869442.6062 464111.9791 2263703.22 805733.2175 1136998.093 1454576.485 1366716.157 764512.5469 1932077.223 0.618352592 0.450004066 0.24021399 1.171642206 0.41702951 0.588484808 0.752856287 0.707381744 0.395694612 1 20.88172133 -11.50903974 2.22681942 6.46033749 0.598605656 0.20128233 0.242725896 9249950.888 777897.4217 254591303.9 0.061995527 3.10E-12 11.50903974 -5.861731834 IQPS(ph)SPPPNHPNNHLFR ddPTM_HeLa_A485_30min_R1 1 IQPSSPPPNHPNNHLFR 17 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2-8;Q9Y2K2 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 0 IQPS(0.585)S(0.415)PPPNHPNNHLFR 57.798 0.022268 376080000 117290 113130 111740 164220 165350 136900 201540 192870 109660 145890 TRUE FALSE FALSE 143380.7559 126359.5694 153077.2759 173190.9228 148887.1734 144067.8723 158479.3326 145568.3301 131667.7561 109522.3079 1.309146589 1.153733626 1.397681247 1.581330106 1.359423265 1.315420347 1.447005049 1.329120367 1.202200343 1 16.74086523 -8.016631678 2.126404897 1.001471812 1.366574655 0.551666796 0.102656045 0.270043425 2.814292413 0.106916567 0.029691965 9.62E-09 8.016631678 0.365102844 IQPSS(ph)PPPNHPNNHLFR ddPTM_HeLa_A486_30min_R1 2 IQPSSPPPNHPNNHLFR 17 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2-8;Q9Y2K2 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 0 IQPS(0.026)S(0.974)PPPNHPNNHLFR;IQPS(0.227)S(0.773)PPPNHPNNHLFR ; 61.181 0.015493 1300490000 723330 772800 620880 254580 847660 683700 807440 870650 604980 848510 TRUE FALSE FALSE 672628.3023 711560.5135 861301.3637 592675.1058 741338.5787 599352.0454 605409.9718 672422.0012 657420.1535 636037.5731 1.057529194 1.118739747 1.354167427 0.931824048 1.165557838 0.94232176 0.951846239 1.057204841 1.033618423 1 19.27875247 -5.287811944 24.99977372 1.015168758 1.171004973 0.38685897 0.095065286 782.2150635 741496.1399 0.02670149 0.039617833 5.15E-06 5.287811944 0.155836215 IQQALTSPLPMT(ph)PILEGSHR ddPTM_HeLa_A485_30min_R1 2 IQQALTSPLPMTPILEGSHR 20 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 IQQALTSPLPMT(1)PILEGSHR;IQQALTSPLPMT(0.998)PILEGS(0.002)HR ; 140.07 7.48E-08 610860000 197114 226494 218194 182213 244762 210617 260230 260040 193137 255012 TRUE FALSE FALSE 240961.3293 252980.5031 298913.0404 192166.8348 220392.6359 221644.5804 204629.7346 196264.7823 231897.8243 191442.2015 1.258663593 1.321445852 1.561374859 1.003785128 1.151222845 1.157762388 1.068885193 1.025190792 1.211320297 1 17.54654937 -5.273899847 24.99988305 1.094065044 1.374589885 0.654167042 0.097263255 453.2506881 909372.1474 0.027069317 0.040478274 5.32E-06 5.273899847 0.280524841 IQQALTSPLPMT(ph)PILEGSHR ddPTM_HeLa_A486_30min_R1 2 IQQALTSPLPMTPILEGSHR 20 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 IQQALTSPLPMT(1)PILEGSHR;IQQALTS(0.001)PLPMT(0.997)PILEGS(0.001)HR ; 163.71 3.19E-13 679520000 243631 260771 224479 86821 318240 235663 290766 240350 238876 309200 TRUE FALSE FALSE 226553.725 240106.5562 311403.2806 202123.6757 278323.3717 206589.2951 218013.2714 185627.5518 259581.964 231774.3074 0.977475577 1.035949838 1.343562554 0.872071102 1.200837896 0.891338205 0.940627431 0.800897881 1.119977304 1 17.82236112 -6.279179658 24.73166387 0.937502981 1.085626363 0.185460304 0.140563029 1142.646128 1592954.351 0.047654388 0.042112405 5.26E-07 6.279179658 0.148123382 IQQFDDGGS(ph)DEEDIWEEKHIAFTPESQR ddPTM_HeLa_A485_30min_R1 5 IQQFDDGGSDEEDIWEEKHIAFTPESQR 28 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR ;;;; 352.87 4.04E-146 3602710000 339874 595427 458657 320300 968270 890825 1291330 2008880 512885 554534 TRUE FALSE FALSE 415477.7987 665057.0081 628333.3106 337797.178 871865.639 937467.2195 1015426.796 1516199.03 615816.315 416298.8792 0.998027666 1.597546958 1.509332218 0.811429468 2.094326174 2.251909064 2.439177348 3.64209251 1.479264888 1 18.66726015 -5.905409145 5.787543049 2.327115181 1.279556473 0.287703654 0.684524283 0.236654522 11.86912545 0.208334247 0.237203084 1.24E-06 5.905409145 -1.047558708 IQQFDDGGS(ph)DEEDIWEEKHIAFTPESQR ddPTM_HeLa_A486_30min_R1 3 IQQFDDGGSDEEDIWEEKHIAFTPESQR 28 1 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR ;; 322 2.48E-109 2432770000 579060 508844 509620 361815 1193850 585110 1010890 1204130 445097 810870 TRUE FALSE FALSE 538470.8843 468521.3483 706958.5121 842323.6051 1044106.201 512925.0772 757954.6299 929975.885 483678.3663 607822.8741 0.885900987 0.770818882 1.163099551 1.385804386 1.717780369 0.843872613 1.246999187 1.530011332 0.795755453 1 19.21329144 -4.845387015 4.846410577 1.247236351 0.828963952 0.231419623 0.27509522 0.256832894 10.45908414 0.071833941 0.160166313 1.43E-05 4.845387015 -0.418272399 IQQFDDGGS(ph)DEEDIWEEKHIAFTPESQRR ddPTM_HeLa_A485_30min_R1 1 IQQFDDGGSDEEDIWEEKHIAFTPESQRR 29 2 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YEN2;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-3 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 IQQFDDGGS(1)DEEDIWEEKHIAFTPESQRR 182.11 7.88E-21 155140000 17520 45984 25070 12641 56126 79766 101080 285180 31367 19233 TRUE FALSE FALSE 21417.26356 51361.42879 34344.43625 13331.54582 50537.89837 83942.42442 79483.43225 215239.1579 37662.06918 14438.56706 1.483337195 3.55723865 2.378659608 0.923328871 3.500201798 5.813764211 5.504939094 14.90723816 2.608435383 1 13.81763995 -2.271471054 10.91480867 4.461490653 2.703236728 0 3.935920741 0 0 0.948695624 0 0.005352158 2.271471054 -1.758253925 IQQHVGEEAS(ph)PR ddPTM_HeLa_A485_30min_R1 3 IQQHVGEEASPR 12 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR ;; 130.27 2.15E-05 1413540000 959460 1240720 1277440 1135770 1478670 1252100 1417270 1486080 1170080 1499670 TRUE FALSE FALSE 1172888.567 1385811.411 1750018.215 1197814.239 1331448.423 1317658.02 1114458.686 1121616.55 1404904.323 1125829.868 1.041799121 1.230924361 1.554425108 1.063938942 1.182637324 1.170388224 0.989899733 0.996257589 1.247883328 1 20.1025574 -6.022963979 1.365270006 1.067716638 1.254045156 0.191379495 0.148306846 0.685923248 2.632993686 0.06484737 0.07160569 9.48E-07 6.022963979 0.186328518 IQQHVGEEAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 IQQHVGEEASPR 12 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR ;;; 140.8 1.37E-06 2328720000 1402350 1646130 1479470 549080 1918340 1425320 1673380 1673190 1464460 1794630 TRUE FALSE FALSE 1304052.507 1515684.664 2052360.406 1278285.989 1677723.909 1249478.51 1254682.625 1292241.162 1591400.572 1345242.967 0.969380654 1.126699564 1.525642918 0.950226852 1.24715308 0.92881252 0.932681051 0.960600571 1.182983752 1 20.35943533 -6.263756791 24.97203225 0.994282206 1.169993252 0.197405068 0.16361961 338.8964046 3651869.973 0.056571952 0.052277269 5.45E-07 6.263756791 0.175711047 IQRPNTTQEGEEMETDMDVADVAMES(ph)SPGSSISMEHR ddPTM_HeLa_A485_30min_R1 5 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 0 IQRPNTTQEGEEMETDMDVADVAMES(0.497)S(0.497)PGS(0.005)S(0.001)ISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.392)S(0.392)PGS(0.161)S(0.048)IS(0.007)MEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.565)S(0.431)PGS(0.004)SISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.587)S(0.413)PGSSISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.565)S(0.435)PGSSISMEHR ;;;; 218.53 1.07E-39 1446880000 244221 325021 334814 284173 440685 249451 346591 310571 369694 411761 TRUE FALSE FALSE 298547.1189 363029.3786 458675.6314 299696.6514 396808.8541 262511.8686 272539.0015 234402.9753 443888.1948 309116.5606 0.965807585 1.174409349 1.483827429 0.969526352 1.283686818 0.849232626 0.881670658 0.758299636 1.435989692 1 18.23779142 -6.259578957 24.990726 0.963471759 1.181085318 0.155227686 0.219036814 290.1953053 3898152.958 0.073132395 0.069584172 5.50E-07 6.259578957 0.217613559 IQRPNTTQEGEEMETDMDVADVAMES(ph)SPGSSISMEHR ddPTM_HeLa_A486_30min_R1 2 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 0 IQRPNTTQEGEEMETDMDVADVAMES(0.653)S(0.346)PGS(0.001)SISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.445)S(0.364)PGS(0.148)S(0.031)IS(0.013)MEHR ; 152.87 1.67E-09 202936000 46250 55479 52374 5469.4 59149 49101.7 46145 51124 38380 45517 TRUE FALSE FALSE 43008.11384 51082.64199 72654.61542 12733.03961 51729.98088 43044.03148 34599.03293 39484.18123 41706.8093 34119.24693 1.260523537 1.497179644 2.129431976 0.373192282 1.516152481 1.261576247 1.014062034 1.157240701 1.222383641 1 15.05829818 -5.245266942 24.99995742 1.107618847 1.615858412 0.350486894 0.342061218 992.8612849 1534799.952 0.090709587 0.156507799 5.69E-06 5.245266942 0.508239566 IQRPNTTQEGEEMETDMDVADVAMESS(ph)PGSSISMEHR ddPTM_HeLa_A485_30min_R1 2 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 0 IQRPNTTQEGEEMETDMDVADVAMES(0.011)S(0.989)PGSSISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.126)S(0.874)PGSSISMEHR ; 251.24 1.25E-52 642160000 130684 164815 186451 131420 238410 154442 173050 158726 188970 215210 TRUE FALSE FALSE 159754.2049 184088.6806 255426.9838 138599.1418 214673.0633 162528.3443 136076.4538 119798.1996 226894.5457 161562.1076 0.988809859 1.139429803 1.580983236 0.857869112 1.328733986 1.00598059 0.842254758 0.741499361 1.404379709 1 17.30172935 -6.436386613 8.019142308 0.968294557 1.180875572 0.117968371 0.241539042 0.608097891 50.98312427 0.08381916 0.073722975 3.66E-07 6.436386613 0.212581015 IQRPNTTQEGEEMETDMDVADVAMESS(ph)PGSSISMEHR ddPTM_HeLa_A486_30min_R1 4 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 0 IQRPNTTQEGEEMETDMDVADVAMES(0.414)S(0.585)PGS(0.001)SISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.177)S(0.82)PGS(0.002)SISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.12)S(0.879)PGSSISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.135)S(0.865)PGSSISMEHR ;;; 218.63 1.06E-39 1600210000 421118 433726 455690 54096.4 515088 450791 452478 433294 446397 330014 TRUE FALSE FALSE 391599.8029 399355.9722 632145.3718 125939.1531 450480.86 395176.9897 339263.2186 334642.4149 485091.0514 247376.3464 1.583012315 1.614366038 2.555399419 0.509099414 1.821034495 1.59747282 1.371445668 1.352766422 1.960943552 1 17.91634803 -11.95320165 0.24613621 1.80E-39 1.650936748 0.106857638 0.492485049 137.9259891 3.378245252 75.14207373 0.756300228 1.11E-12 11.95320165 1.650936748 IQS(ph)GLGALSR ddPTM_HeLa_A485_30min_R1 1 IQSGLGALSR 10 0 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 1 0 IQS(1)GLGALSR 100.73 0.0015892 61047000 55720 58190 63915 82035 78365 53801 92143 78479 51415 93434 TRUE FALSE FALSE 68114.72177 64994.81431 87559.81823 86516.36433 70562.70544 56617.93717 72455.89531 59231.9022 61733.51889 70142.62333 0.971088883 0.926609403 1.248311142 1.233434968 1.005988971 0.807183058 1.032979548 0.844449486 0.880114201 1 16.09800377 -6.000869066 24.99525129 0.910265544 1.097042369 0.369958556 0.111970851 36.82194647 1059093.485 0.037152057 0.041623507 9.98E-07 6.000869066 0.186776826 IQS(ph)GLGALSR ddPTM_HeLa_A486_30min_R1 2 IQSGLGALSR 10 0 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 1 0 IQS(1)GLGALSR;IQS(1)GLGALSR ; 157.33 1.46E-06 168545000 195186 272440 178340 105789 255140 285150 308480 296250 188309 263500 TRUE FALSE FALSE 181504.4693 250850.8622 247398.0241 246282.1383 223137.9621 249971.0922 231295.0412 228800.3421 204631.7757 197517.8849 0.918926757 1.27001594 1.252534798 1.246885255 1.129710164 1.265561811 1.17100809 1.158377846 1.036016439 1 17.59162377 -7.770110977 2.504545023 0.998739557 1.189089794 0.29599254 0.098283372 0.322930377 3.822409666 0.08901052 0.025305598 1.70E-08 7.770110977 0.190350237 IQS(ph)TPVK ddPTM_HeLa_A486_30min_R1 2 IQSTPVK 7 0 E7END7;P62820-3;P62820-2;P62820 E7END7 RAB1A Ras-related protein Rab-1A 1 0 IQS(0.5)T(0.5)PVK;IQS(0.643)T(0.357)PVK ; 110.88 0.0029376 1159720000 2630800 3285600 2340000 1350130 3577700 4253100 4506300 4012000 3390000 4641900 TRUE FALSE FALSE 2446394.505 3025237.09 3246110.667 3143170.872 3128951.505 3728395.764 3378776.077 3098555.181 3683847.929 3479538.026 0.703080262 0.869436421 0.932914267 0.903329939 0.899243371 1.071520339 0.971041573 0.890507636 1.058717537 1 21.73046434 -3.311827268 0.645045294 0.980731054 1.77E-14 0.686338395 0.056442468 6.006541888 0.761392907 0.024814292 5.731437128 0.000487722 3.311827268 -0.980731054 IQSS(ph)YRRWMIR ddPTM_HeLa_A486_30min_R1 2 IQSSYRRWMIR 11 2 Q8IZT6 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 IQS(0.1)S(0.9)YRRWMIR;IQS(0.079)S(0.92)YRRWMIR ; 89.805 0.00085054 294260000 174301 302310 635600 6786.7 572260 99661 78171 152451 287550 29428 TRUE FALSE FALSE 162083.4 278353.8546 881721.342 15799.78058 500481.8147 87365.8391 58611.78899 117741.2353 312475.0655 22059.03726 7.347709608 12.61858581 39.97098023 0.71624978 22.68828911 3.960546332 2.657042024 5.337550951 14.16539906 1 14.42908221 -6.275613163 24.32406782 5.522262034 16.8517367 0.232448342 10.21274739 870.9771629 1494705.66 3.552601312 3.149060082 5.30E-07 6.275613163 11.32947467 IQSSLSSAS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 IQSSLSSASPSK 12 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 IQSSLSS(0.001)AS(0.998)PS(0.001)K;IQSSLSSAS(0.999)PSK;IQSSLSSAS(0.975)PS(0.025)K;IQSSLS(0.003)S(0.001)AS(0.992)PS(0.004)K ;;; 190.24 3.34E-13 1044640000 1121190 981880 830950 1641340 1426470 1149700 1662520 1457460 1032210 2165460 TRUE FALSE FALSE 1370594.847 1096702.325 1138352.984 1731002.248 1284445.638 1209896.514 1307309.02 1100015.65 1239365.079 1625650.674 0.843105391 0.674623609 0.700244525 1.064805788 0.790111712 0.744253691 0.804175855 0.676661762 0.762380934 1 20.63258585 -11.20787499 2.201604842 1.621427423 0.783410784 0.265957996 0.107398721 9062784.596 1631930.139 28067229.26 0.028559297 6.20E-12 11.20787499 -0.83801664 IQSSLSSAS(ph)PSK ddPTM_HeLa_A486_30min_R1 3 IQSSLSSASPSK 12 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 IQSSLSSAS(0.999)PS(0.001)K;IQSSLSS(0.001)AS(0.999)PSK;IQSSLSSAS(1)PSK ;; 195.87 5.30E-14 1307180000 1146590 1193810 713320 576370 1177770 1277340 1575100 1438700 919020 1690200 TRUE FALSE FALSE 1066219.962 1099208.148 989536.6074 1341818.488 1030043.104 1119754.778 1180993.32 1111139.417 998681.3936 1266962.919 0.841555776 0.867592991 0.781030441 1.059082684 0.813001777 0.883810222 0.932145135 0.877010211 0.788248321 1 20.27294287 -11.64130579 2.204158396 4.244230456 0.874826654 0.201229822 0.076548221 4717145.512 458063.2361 79188198.11 0.018709803 2.28E-12 11.64130579 -3.369403802 IQST(ph)PVK ddPTM_HeLa_A485_30min_R1 3 IQSTPVK 7 0 E7END7;P62820-3;P62820-2;P62820 E7END7 RAB1A Ras-related protein Rab-1A 1 0 IQS(0.233)T(0.767)PVK;IQS(0.086)T(0.914)PVK;IQS(0.021)T(0.979)PVK ;; 124.92 0.0085339 1662750000 4573800 3247620 2671980 6352600 4330600 3224440 4496600 3733800 3546100 9025000 TRUE FALSE FALSE 5591226.031 3627400.908 3660456.592 6699626.452 3899430.258 3393266.692 3535864.676 2818079.696 4257769.743 6775233.593 0.825244762 0.535391269 0.540270168 0.988840659 0.575541818 0.500833904 0.521880851 0.415938382 0.628431431 1 22.69183926 -8.055472073 22.27759837 1.000000002 0.606842334 0.340116645 0.160947113 6831.357792 2743471.446 0.161432164 0.041681606 8.80E-09 8.055472073 -0.393157668 IQST(ph)PVK ddPTM_HeLa_A486_30min_R1 2 IQSTPVK 7 0 E7END7;P62820-3;P62820-2;P62820 E7END7 RAB1A Ras-related protein Rab-1A 1 0 IQS(0.223)T(0.777)PVK;IQS(0.26)T(0.74)PVK ; 104.42 0.017184 920360000 2625800 3270600 2152700 1651460 3608500 4633100 4499300 4238100 3300400 4848000 TRUE FALSE FALSE 2441744.98 3011425.745 2986283.091 3844682.34 3155888.282 4061515.228 3373527.551 3273177.147 3586481.329 3634029.245 0.671911208 0.828674053 0.821755382 1.057966813 0.868426771 1.117634162 0.928316016 0.900701928 0.986915924 1 21.7931386 -4.589811005 1.19399068 0.975431235 0.635423897 0.620823043 0.075813286 0.592321887 1.078565221 0.02319163 0.218530179 2.57E-05 4.589811005 -0.340007338 IQTQLNLIHPDIFPLLTSFR ddPTM_HeLa_A485_30min_R1 1 IQTQLNLIHPDIFPLLTSFR 20 0 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;H7C2I4;Q9BQ52-4 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 0 121.63 2.68E-07 11122000 6760.7 7777.4 8985.7 7174 8099 8091.7 11673 11330 5435.1 10740 FALSE FALSE TRUE 8264.594391 8686.899276 12309.88436 7565.897454 7292.635123 8515.3689 9178.96819 8551.299735 6525.874716 8062.715655 1.025038553 1.077416053 1.526766524 0.938380786 0.90448869 1.056141536 1.138446224 1.060597955 0.809389168 1 12.97705013 IQTQLNLIHPDIFPLLTSFR ddPTM_HeLa_A486_30min_R1 2 IQTQLNLIHPDIFPLLTSFR 20 0 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;H7C2I4;Q9BQ52-4 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 0 ; ; 164.98 2.91E-15 20566700 9897.2 16667.7 15028.6 4864.2 18027.4 13418.8 18233.2 15127.1 14922 17559 FALSE FALSE TRUE 9203.457389 15346.89075 20848.0764 11324.10342 15766.23539 11763.32489 13671.06051 11682.98955 16215.45097 13162.11211 0.699238641 1.165989973 1.583946119 0.860356098 1.197849955 0.893726234 1.038667685 0.887622705 1.2319794 1 13.68410339 -6.251218127 24.6883917 1.0051424 1.118468578 0.033868384 0.233759425 2150.709263 5194821.76 0.077930823 0.077067839 5.61E-07 6.251218127 0.113326178 IQTS(ph)GEPDVAERVDLEELIECATGK ddPTM_HeLa_A486_30min_R1 1 IQTSGEPDVAERVDLEELIECATGK 25 1 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 IQT(0.037)S(0.963)GEPDVAERVDLEELIECATGK 143.82 2.56E-09 18534000 7989.5 8750.9 5002.5 3952.1 8166.4 9178.8 11178 11953 6984.1 10472 TRUE FALSE FALSE 7429.477308 8057.446814 6939.601972 9200.688528 7142.093963 8046.412979 8381.146171 9231.562832 7589.487411 7849.743039 0.946461212 1.026459946 0.884054667 1.1721006 0.90985067 1.025054316 1.067696883 1.176033761 0.966845332 1 12.93842971 -6.587614301 4.797981055 1.066263683 0.992041205 0.095314092 0.089734338 0.431359262 19.61789039 0.033516971 0.025841992 2.58E-07 6.587614301 -0.074222478 IQVDAYFS(ph)PIHSQLDHLLDPSSFTGR ddPTM_HeLa_A485_30min_R1 2 IQVDAYFSPIHSQLDHLLDPSSFTGR 26 0 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNT0;A0A096LP76;A0A096LNY6 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 IQVDAYFS(1)PIHSQLDHLLDPSSFTGR;IQVDAY(0.002)FS(0.996)PIHS(0.002)QLDHLLDPSSFTGR ; 133.47 3.14E-06 89276000 22080 28492 28224 21854.2 37419 28396 36956 42130 28434 33559 TRUE FALSE FALSE 26991.61982 31823.89155 38665.2321 23048.03961 33693.43297 29882.77065 29060.0487 31797.55144 34140.44299 25193.35891 1.071378371 1.263185734 1.534739065 0.914845841 1.337393442 1.186136821 1.153480519 1.262140216 1.35513661 1 14.62075586 -10.16767018 4.661137723 0.999972967 1.231977397 0.158670192 0.159516992 4.88E-05 8.72E-06 0.148583397 0.036032017 6.80E-11 10.16767018 0.232004429 IQVDAYFS(ph)PIHSQLDHLLDPSSFTGR ddPTM_HeLa_A486_30min_R1 2 IQVDAYFSPIHSQLDHLLDPSSFTGR 26 0 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNT0;A0A096LP76;A0A096LNY6 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 IQVDAYFS(0.999)PIHS(0.001)QLDHLLDPSSFTGR;IQVDAYFS(0.995)PIHS(0.005)QLDHLLDPSSFTGR ; 131.79 3.80E-06 95010000 28969 28659.3 29591 14995.5 40250 24630.1 34129 33232 28278.9 31583 TRUE FALSE FALSE 26938.4227 26388.23269 41049.42767 34910.28183 35201.46968 21591.48868 25589.56322 25665.79905 30730.13782 23674.41123 1.137870861 1.114631001 1.733915462 1.47459979 1.486899477 0.912017979 1.080895443 1.084115622 1.298031766 1 14.53104093 -6.252473 24.90482838 1.080637091 1.398160897 0.408942843 0.188890465 690.2502635 1917225.687 0.067348161 0.066397419 5.59E-07 6.252473 0.317523806 IQVEQTRDEDLDT(ph)DSLD ddPTM_HeLa_A485_30min_R1 1 IQVEQTRDEDLDTDSLD 17 1 V9GYT7 V9GYT7 PSIP1 1 0 IQVEQTRDEDLDT(0.5)DS(0.5)LD 113.47 1.49E-05 0 43532 56013 95858 89153 201380 82990 151290 171610 98476 139880 TRUE FALSE FALSE 53215.54322 62563.2331 131319.8632 94023.20264 181329.9001 87335.22807 118965.6556 129522.3784 118239.2299 105010.4903 0.506764068 0.595780792 1.250540425 0.895369619 1.726778911 0.831680986 1.132893059 1.233423233 1.125975411 1 16.68017393 -4.730272881 7.455336726 1.157572209 0.544571041 0.512970187 0.233135874 0.144565259 26.13371896 0.056805792 0.14732161 1.86E-05 4.730272881 -0.613001168 IQVEQTRDEDLDTDS(ph)LD ddPTM_HeLa_A485_30min_R1 1 IQVEQTRDEDLDTDSLD 17 1 V9GYT7 V9GYT7 PSIP1 1 0 IQVEQTRDEDLDT(0.017)DS(0.983)LD 207.21 3.67E-24 159730000 55291 64526 115080 87581 244990 127810 158620 207700 142950 151110 TRUE FALSE FALSE 67590.2922 72071.7544 157652.8809 92365.32826 220597.9354 134501.934 124729.5412 156761.2493 171638.7538 113441.058 0.595818599 0.635323363 1.389733873 0.814214271 1.944604003 1.185654792 1.099509679 1.381874007 1.513021448 1 16.79158337 -4.755786015 24.67920352 1.300417627 0.615570519 0.460144242 0.292531768 95.83650849 418350.0311 0.072961509 0.181941484 1.75E-05 4.755786015 -0.684847109 IQVEQTRDEDLDTDS(ph)LD ddPTM_HeLa_A486_30min_R1 1 IQVEQTRDEDLDTDSLD 17 1 V9GYT7 V9GYT7 PSIP1 1 0 IQVEQTRDEDLDT(0.066)DS(0.934)LD 183.31 1.67E-16 153760000 115060 144380 216630 93753 366510 197100 276310 301430 148340 140690 TRUE FALSE FALSE 106994.8882 132938.803 300514.9376 218261.722 320538.8982 172783.806 207174.3155 232800.9692 161198.2306 105460.3083 1.014551256 1.260557694 2.849554894 2.069610127 3.039426904 1.638377593 1.964476673 2.207474765 1.528520382 1 16.68634059 -8.001007935 3.917264813 1.002009667 2.02966161 0.223303526 0.592410044 0.287976322 12.01317127 0.592811789 0.15602946 9.98E-09 8.001007935 1.027651943 IQVLVEPDHFK ddPTM_HeLa_A485_30min_R1 2 IQVLVEPDHFK 11 0 P17931 P17931 LGALS3 Galectin-3 0 0 ; ; 149.38 0.00011819 48856000 71575 73345 59528 77971 93209 84819 115217 115892 68015 125667 FALSE FALSE TRUE 87496.61182 81922.05973 81549.88437 82230.3583 83928.78468 89259.99168 90599.94671 87469.30529 81664.98663 94340.52963 0.927455169 0.868365485 0.864420464 0.871633418 0.889636565 0.946146816 0.960350202 0.927165722 0.865640536 1 16.52559008 -6.184488419 5.014793966 0.936530963 0.880816538 0.37925727 0.035378106 0.251727855 11.49438396 0.011878336 0.011821992 6.54E-07 6.184488419 -0.055714425 IQVLVEPDHFK ddPTM_HeLa_A486_30min_R1 2 IQVLVEPDHFK 11 0 P17931 P17931 LGALS3 Galectin-3 0 0 ; ; 127.37 0.00062395 34245000 19762 24045.9 16549.6 11580.1 29287 26910.1 30709.9 30831 22614.4 30814 FALSE FALSE TRUE 18376.78585 22140.41531 22958.04833 26959.05803 25613.55137 23590.20546 23025.9582 23811.45434 24574.6344 23097.97383 0.795601639 0.958543614 0.993942088 1.167161164 1.108909013 1.021310598 0.996882167 1.030889311 1.063930307 1 14.49547868 -4.357736616 1.739682516 1.054330288 0.74088625 0.700888173 0.051001214 0.439924514 1.556994454 0.015463214 0.214868637 4.39E-05 4.357736616 -0.313444038 IQVTPPGFQLVFLPFADDKR ddPTM_HeLa_A485_30min_R1 2 IQVTPPGFQLVFLPFADDKR 20 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 196.36 4.33E-23 67263000 58771.7 42196.3 38270.2 73434.6 58326.6 48665.6 67848.5 50990.4 39645.1 101465.9 FALSE FALSE TRUE 71845.26191 47130.79023 52427.93954 77446.14625 52519.39891 51213.65556 53352.1137 38484.92445 47601.50792 76172.31847 0.943193845 0.61873908 0.688280738 1.016722975 0.689481428 0.672339461 0.700413415 0.505235041 0.624918722 1 16.21697919 -5.9688752 24.98613628 0.670899168 0.800877144 0.100559261 0.158567026 412.7290905 331325.8552 0.048396178 0.054875664 1.07E-06 5.9688752 0.129977976 IQVTPPGFQLVFLPFADDKR ddPTM_HeLa_A486_30min_R1 2 IQVTPPGFQLVFLPFADDKR 20 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 177.47 2.08E-18 87705000 105286 131742 75417 52510 101032 142068 164077 129137 126872 154583 FALSE FALSE TRUE 97905.9951 121302.2841 104620.4821 122245.9337 88359.62447 124541.0946 123023.1992 99735.32414 137869.3671 115874.4106 0.844931979 1.046842728 0.902878224 1.054986455 0.762546485 1.07479377 1.061694282 0.860719149 1.189817203 1 16.82220248 IQVTSLS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 IQVTSLSPSR 10 0 Q9NXG0-2;Q9NXG0 Q9NXG0-2 CNTLN Centlein 1 0 IQVT(0.001)S(0.002)LS(0.984)PS(0.013)R 74.524 0.01113 120530000 134560 206290 179610 162650 229940 195980 244800 311910 169380 191130 TRUE FALSE FALSE 164492.4078 230413.821 246055.2132 171535.1576 207046.3662 206241.2098 192496.4802 235413.5834 203373.0124 143484.8085 1.14640992 1.605841228 1.714852017 1.195493512 1.442984581 1.43737314 1.341580912 1.640686467 1.417383586 1 17.13053847 -8.049213829 22.73673574 0.999999998 1.449120634 0.365571296 0.17308175 5202.847363 2403706.196 0.164362886 0.042438315 8.93E-09 8.049213829 0.449120636 IQVTSLS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 IQVTSLSPSR 10 0 Q9NXG0-2;Q9NXG0 Q9NXG0-2 CNTLN Centlein 1 0 IQVTSLS(0.987)PS(0.013)R;IQVTSLS(0.88)PS(0.12)R;IQVTSLS(0.596)PS(0.403)R ;; 141.34 7.16E-06 464490000 542760 564940 403820 279332 681760 524970 717030 734400 420000 706030 TRUE FALSE FALSE 504715.3268 520172.0969 560189.9187 650299.0127 596247.3036 460204.5389 537621.51 567193.1518 456405.9382 529235.4925 0.953668705 0.982874551 1.058488946 1.228751703 1.126620025 0.869564769 1.015845531 1.071721681 0.862387245 1 19.01355029 -6.243230291 24.94865512 0.971632795 1.073407053 0.246983149 0.092113663 1370.545274 1877814.128 0.032842219 0.032780711 5.71E-07 6.243230291 0.101774258 IQVWHEEHR ddPTM_HeLa_A485_30min_R1 7 IQVWHEEHR 9 0 P26038 P26038 MSN Moesin 0 0 ;;;;;; ;;;;;; 177.06 2.12E-06 3523294000 966048 1186968 1176521 960309 1161993 1222015 1322898 1433825 1067313 1466842 FALSE FALSE TRUE 1180942.045 1325773.582 1611765.077 1012768.249 1046300.897 1285997.816 1040250.035 1082177.171 1281512.929 1101185.285 1.072428102 1.203951416 1.463663835 0.919707395 0.950158808 1.167830549 0.944663945 0.982738496 1.163757768 1 20.07062581 -5.282822795 24.99885144 1.017998445 1.242408199 0.431273758 0.120095883 750.203592 877043.9134 0.034130533 0.050678042 5.21E-06 5.282822795 0.224409754 IQVWHEEHR ddPTM_HeLa_A486_30min_R1 4 IQVWHEEHR 9 0 P26038 P26038 MSN Moesin 0 0 ;;; ;;; 170.47 1.20E-05 2440040000 662071 735780 672950 207854 933750 668070 730490 733850 706113 842820 FALSE FALSE TRUE 615663.2418 677474.1131 933534.2622 483894.6164 816630.3681 585650.3158 547713.6757 566768.3748 767319.4434 631772.3862 0.974501664 1.072338912 1.477643345 0.765931888 1.292602187 0.926995748 0.866947793 0.897108495 1.214550462 1 19.26904535 -6.319835756 24.99947919 0.967553919 1.114721549 0.104487335 0.196279174 599.7967401 256770.9696 0.06751559 0.059543171 4.79E-07 6.319835756 0.14716763 IRAENGTGS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 IRAENGTGSSPR 12 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 0 IRAENGT(0.157)GS(0.739)S(0.104)PR 69.92 0.0059859 482520000 360660 345270 347390 134740 458090 348270 403240 403570 291480 389790 TRUE FALSE FALSE 335379.5965 317909.5477 481908.7114 313681.5294 400632.0807 305303.9883 302345.087 311685.9209 316745.7211 292184.0469 1.147836783 1.088045535 1.649332729 1.073575141 1.371163433 1.044903004 1.034776163 1.06674517 1.084062338 1 18.15651788 -6.279778602 23.52663167 1.049561285 1.266711898 0.330411226 0.156475505 475.7457519 610311.7666 0.054248199 0.047955602 5.25E-07 6.279778602 0.217150613 IRAENGTGSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 IRAENGTGSSPR 12 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 0 IRAENGT(0.033)GS(0.124)S(0.843)PR 55.885 0.019045 595140000 334080 502840 410640 263490 521780 525540 517040 614760 442520 394820 TRUE FALSE FALSE 408394.9434 561642.7639 562552.8242 277883.7915 469829.7511 553056.4618 406570.1802 463989.1461 531329.705 296398.6401 1.377857008 1.894889813 1.897960206 0.937533962 1.58512789 1.86592105 1.371700558 1.565422655 1.792618565 1 18.1771793 -10.69139635 2.699581183 0.913774243 1.587813273 0.27390977 0.287042568 78956085.82 70233477.71 46668587.72 0.071677187 2.04E-11 10.69139635 0.67403903 IRAENGTGSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 IRAENGTGSSPR 12 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 0 IRAENGT(0.019)GS(0.173)S(0.808)PR;IRAENGT(0.226)GS(0.319)S(0.455)PR;IRAENGT(0.018)GS(0.073)S(0.909)PR ;; 77.192 0.0038439 3060650000 2944750 2810150 2634550 1204110 3563300 2881350 3240330 3371680 2412430 3356980 TRUE FALSE FALSE 2738338.232 2587463.48 3654718.316 2803228.932 3116357.688 2525878.332 2429565.161 2604022.067 2621541.375 2516370.358 1.088209541 1.028252249 1.452376954 1.113996961 1.238433634 1.003778448 0.965503807 1.034832595 1.041794729 1 21.26291284 -6.271235378 23.98885587 1.008629051 1.186579677 0.395459624 0.108209937 431.7179596 1057205.44 0.038527503 0.034431736 5.36E-07 6.271235378 0.177950626 IRANS(ph)ISR ddPTM_HeLa_A485_30min_R1 4 IRANSISR 8 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRANS(0.914)IS(0.086)R;IRANS(0.732)IS(0.268)R;IRANS(0.963)IS(0.037)R;IRANS(0.889)IS(0.111)R ;;; 129.88 0.0002694 2381710000 564509 663340 722560 498605 920510 867270 940400 1119000 666060 628870 TRUE FALSE FALSE 690082.0795 740911.8427 989865.0122 525842.5286 828860.7923 912678.9161 739475.8576 844563.4955 799732.1325 472104.2825 1.461715356 1.569381745 2.096708395 1.113827068 1.755673107 1.933214652 1.566340076 1.788934197 1.693973476 1 18.84874604 -10.28985394 3.938708603 0.99893201 1.669511278 0.380328157 0.254353149 29797285.11 19463366.32 254699.2111 0.059721414 5.13E-11 10.28985394 0.670579268 IRANS(ph)ISR ddPTM_HeLa_A486_30min_R1 4 IRANSISR 8 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRANS(0.995)IS(0.005)R;IRANS(0.953)IS(0.047)R;IRANS(0.814)IS(0.186)R;IRANS(0.991)IS(0.009)R ;;; 139.54 0.00021035 2900980000 788070 734680 719230 275425 1002790 661590 838960 879360 610550 831580 TRUE FALSE FALSE 732830.3626 676461.2811 997735.1176 641203.3192 877010.7276 579969.7524 629043.3344 679148.9243 663472.9656 623346.9553 1.175637992 1.085208286 1.600609595 1.028645947 1.406938335 0.930412425 1.009138376 1.089519919 1.064371872 1 19.24967587 -6.270293048 24.94612641 1.023686628 1.255865796 0.371920671 0.156308245 719.6690635 2027736.256 0.052953874 0.047398452 5.37E-07 6.270293048 0.232179168 IRANSIS(ph)R ddPTM_HeLa_A485_30min_R1 2 IRANSISR 8 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRANS(0.46)IS(0.54)R;IRANS(0.295)IS(0.705)R ; 123.38 0.00030908 2852800000 483540 625820 689020 385540 775300 692110 891000 1007540 553560 546000 TRUE FALSE FALSE 591101.8048 699004.2051 943917.1705 406601.074 698108.4098 728347.8094 700630.5712 760439.2352 664654.4144 409892.2484 1.442090713 1.705336483 2.302842208 0.991970635 1.703151042 1.776925063 1.709304272 1.85521741 1.621534481 1 18.64488518 -8.044466253 21.33661582 0.999999995 1.691462353 0.303335201 0.309843065 1819.905315 873261.0375 0.293660361 0.075822779 9.03E-09 8.044466253 0.691462358 IRANSIS(ph)R ddPTM_HeLa_A486_30min_R1 1 IRANSISR 8 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRANS(0.399)IS(0.601)R 119.03 0.00039732 1077000000 367960 302710 314940 122380 392090 312880 340100 368750 255350 366880 TRUE FALSE FALSE 342167.9041 278722.1571 436893.2024 284906.8247 342910.4161 274280.0467 255003.3828 284793.6748 277483.9436 275010.86 1.24419779 1.013495093 1.588639817 1.035983905 1.246897726 0.997342602 0.92724841 1.035572467 1.008992676 1 18.06912907 -6.266111702 23.13333836 0.991893047 1.223653444 0.379420279 0.148336931 154.1347929 763138.8752 0.049789767 0.045439035 5.42E-07 6.266111702 0.231760397 IREEFPDR ddPTM_HeLa_A485_30min_R1 2 IREEFPDR 8 1 P04350;M0QYM7;M0R042;Q9BUF5;K7ESM5;K7ES63 P04350;Q9BUF5 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ; ; 128.27 0.0017314 349200000 168073 237890 218330 195325 311340 240550 277700 294120 226820 270520 FALSE FALSE TRUE 205460.259 265709.1661 299099.3525 205995.1102 280341.8964 253144.826 218367.1264 221986.6088 272340.6935 203084.3426 1.011699161 1.308368547 1.472783912 1.014332802 1.380421026 1.246500951 1.075253383 1.093075941 1.341022602 1 17.63171949 -6.738150159 22.92049985 1.135094368 1.249010377 0.104895629 0.157564795 210.7394307 207401.9198 0.059037247 0.045685888 1.83E-07 6.738150159 0.11391601 IREEYPDR ddPTM_HeLa_A485_30min_R1 11 IREEYPDR 8 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;A0A075B736;Q5SQY0 Q5JP53;P68371;Q3ZCM7 TUBB;TUBB1;TUBB4B;TUBB8 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain 0 0 ;;;;;;;;;; ;;;;;;;;;; 191.45 9.51E-07 27761683000 7321606 9895000 9502820 7533721 11398100 9539340 11016430 12493110 8735380 10144760 FALSE FALSE TRUE 8950271.995 11052134.17 13018308.56 7945269.102 10263265.14 10038805.09 8662679.735 9429155.184 10488490.64 7615858.032 1.175215184 1.451200131 1.709368597 1.04325331 1.347617708 1.318144988 1.137452891 1.238094926 1.377190934 1 22.86057515 -13.98482202 0.109982691 2.51E-10 1.492528921 0.227810616 0.17500982 248.2152658 1.818097323 55.96524505 2.243374943 1.04E-14 13.98482202 1.49252892 IREEYPDR ddPTM_HeLa_A486_30min_R1 9 IREEYPDR 8 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;A0A075B736;Q5SQY0 Q5JP53;P68371;Q3ZCM7 TUBB;TUBB1;TUBB4B;TUBB8 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain 0 0 ;;;;;;;; ;;;;;;;; 193.01 4.71E-06 19694213000 7736777 8421619 7583984 2795160 10016900 7785597 8605895 9250081 7348975 8175670 FALSE FALSE TRUE 7194468.885 7754259.239 10520705.71 6507273.74 8760486.998 6825089.2 6452609.047 7144039.484 7985990.07 6128429.017 1.173949941 1.265293147 1.716705159 1.061817592 1.42948331 1.113676797 1.052897738 1.165721176 1.303105583 1 22.54708587 -6.276047778 24.45915318 1.132801407 1.332531297 0.245258776 0.17731835 931.2059606 1559132.887 0.061830071 0.054779337 5.30E-07 6.276047778 0.199729889 IRFHDFLGDSWGILFSHPR ddPTM_HeLa_A485_30min_R1 2 IRFHDFLGDSWGILFSHPR 19 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 182.34 2.79E-18 78722000 40246 77124 43430 27330.3 49924 70410 93035 203635 30483.1 48205.7 FALSE FALSE TRUE 49198.58385 86142.98091 59496.56427 28823.28509 44953.39127 74096.55873 73157.31222 153693.197 36600.77856 36188.90615 1.359493532 2.380369845 1.644055336 0.79646743 1.242187069 2.047493738 2.021539748 4.246969951 1.011381179 1 15.14325988 -6.523535153 3.090871597 2.332126949 1.509537363 0.059784768 0.931420948 0.526442276 10.35399912 0.368437725 0.292617944 3.00E-07 6.523535153 -0.822589585 IRFHDFLGDSWGILFSHPR ddPTM_HeLa_A486_30min_R1 2 IRFHDFLGDSWGILFSHPR 19 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 124.63 5.93E-07 14494900 13599.1 5074.7 5364.9 3575.9 13929.7 5908.7 7061.7 7491.7 3935.7 8559.8 FALSE FALSE TRUE 12645.87332 4672.56229 7442.332957 8324.875916 12182.50714 5179.744669 5294.787969 5786.003453 4276.849645 6416.370365 1.970876461 0.728225153 1.159897658 1.297443172 1.898660215 0.807270213 0.825199867 0.901756464 0.666552802 1 12.6475417 -6.365826283 24.99990369 0.833073977 1.35296697 0.405103449 0.342242041 38.40984084 9185.282633 0.120273098 0.106070908 4.31E-07 6.365826283 0.519892993 IRHDS(ph)S(ph)DT(ph)SPPRR ddPTM_HeLa_A485_30min_R1 1 IRHDSSDTSPPRR 13 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 3 0 IRHDS(1)S(1)DT(0.675)S(0.325)PPRR 90.561 0.0022088 292850000 144390 218800 208870 159830 254760 197670 242970 279790 197500 222140 TRUE FALSE FALSE 176509.0574 244386.7567 286139.7048 168561.1082 229395.1999 208019.6955 191057.4746 211171.0638 237136.4384 166764.5862 1.058432497 1.465459558 1.715830149 1.010772803 1.375563032 1.247385313 1.145671746 1.26628242 1.421983191 1 17.34745343 -5.277211193 24.99406941 1.22657827 1.418462668 0.179951658 0.19674918 1417.9795 2247111.891 0.05488236 0.081704046 5.28E-06 5.277211193 0.191884398 IRHDS(ph)S(ph)DTS(ph)PPRR ddPTM_HeLa_A486_30min_R1 1 IRHDSSDTSPPRR 13 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 3 0 IRHDS(0.992)S(0.999)DT(0.265)S(0.744)PPRR 64.454 0.019561 299000000 216700 257360 210160 96021 282760 203760 211220 261750 195100 246070 TRUE FALSE FALSE 201510.449 236965.8563 291539.5803 223541.7406 247293.6042 178622.1629 158370.5219 202155.239 212011.4251 184452.4704 1.092478993 1.28469874 1.580567502 1.211920557 1.340690118 0.968391275 0.858597999 1.09597469 1.149409518 1 17.49288959 -6.25990612 24.90693637 1.010730814 1.311569705 0.529316009 0.135429336 109.0170799 1770929.19 0.048095344 0.045664204 5.50E-07 6.25990612 0.300838891 IRHRS(ph)EPQHPK ddPTM_HeLa_A485_30min_R1 6 IRHRSEPQHPK 11 2 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 IRHRS(1)EPQHPK;IRHRS(1)EPQHPK;IRHRS(1)EPQHPK;IRHRS(1)EPQHPK;IRHRS(1)EPQHPK;IRHRS(1)EPQHPK ;;;;; 101.3 0.00047032 733779000 66208.8 178080 146294 63243.6 482207 361834 665321 1668920 202637 157282 TRUE FALSE FALSE 80936.71914 198904.9069 200414.2384 66698.43773 434196.7779 380779.0687 523169.7332 1259614.753 243304.3872 118074.492 0.68547167 1.684571355 1.69735423 0.564884393 3.677312269 3.224905417 4.430844668 10.66796674 2.060600754 1 16.8493378 -6.202339969 1.474877168 5.206635229 1.244249986 0.233451644 2.490895427 0.485914094 2.121451382 1.072931683 1.018109207 6.28E-07 6.202339969 -3.962385243 IRHRS(ph)EPQHPK ddPTM_HeLa_A486_30min_R1 2 IRHRSEPQHPK 11 2 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 IRHRS(1)EPQHPK;IRHRS(1)EPQHPK ; 80.746 0.0025955 189948000 90502 33360 57093 58576 202407 56181 120307 167172 28599 67880 TRUE FALSE FALSE 84158.27715 30716.4321 79200.9386 136367.8883 177019.2267 49249.95943 90204.91612 129110.5849 31077.98435 50882.40618 1.653975971 0.603674913 1.55654861 2.68005974 3.478986943 0.967917265 1.772811526 2.537430807 0.610780556 1 15.63487928 -4.998785333 24.9135515 1.966835217 1.116646796 0.094968557 0.864978094 77.59062773 1591260.703 0.227434105 0.46752185 1.00E-05 4.998785333 -0.850188421 IRIDS(ph)LSAQLSQLQK ddPTM_HeLa_A485_30min_R1 1 IRIDSLSAQLSQLQK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 IRIDS(0.986)LS(0.014)AQLSQLQK 145.88 3.79E-08 117250000 177400 247010 174850 149250 288870 271270 288210 337960 202800 210010 TRUE FALSE FALSE 216862.018 275895.6708 239534.2911 157403.1496 260109.0885 285473.2777 226631.579 255074.7801 243500.0998 157658.3719 1.375518568 1.749958898 1.519324906 0.998381168 1.649827315 1.810708015 1.437485217 1.617895561 1.54447935 1 17.26644226 -9.982313136 5.254868465 0.999997637 1.526303473 0.346072045 0.215467106 6.13E-06 1.19E-06 0.214463547 0.052014817 1.04E-10 9.982313136 0.526305836 IRIDSLSAQLSQLQK ddPTM_HeLa_A485_30min_R1 2 IRIDSLSAQLSQLQK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 179.17 4.12E-11 79692000 106680 168542 119776 101387 178555 188333 216950 282730 130763 150656 FALSE FALSE TRUE 130410.598 188251.5208 164086.1267 106925.5151 160777.4373 198193.8247 170596.8602 213390.0242 157005.9347 113100.2318 1.153053321 1.664466268 1.450802744 0.945404915 1.421548256 1.752373284 1.508368793 1.886733747 1.388201705 1 16.78724236 -6.006084301 24.97606913 1.565336499 1.320212768 0.085188294 0.282222214 548.6167776 2252084.548 0.086910106 0.095386406 9.86E-07 6.006084301 -0.24512373 IRIDSLSAQLSQLQK ddPTM_HeLa_A486_30min_R1 3 IRIDSLSAQLSQLQK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 170.49 1.67E-08 116699000 213971 199538 155447 95035 256033 193613 258928 253018 158014 248893 FALSE FALSE TRUE 198972.7378 183725.8822 215640.2414 221246.2828 223918.9537 169726.9966 194141.4757 195411.3247 171710.7807 186568.5728 1.066485823 0.984763293 1.155822967 1.185871122 1.20019653 0.909729833 1.040590453 1.047396793 0.920362836 1 17.50934646 -6.262204741 24.99999638 0.990139188 1.116993143 0.473273063 0.071039336 74.85086711 2444907.627 0.026454579 0.024736348 5.47E-07 6.262204741 0.126853954 IRIENMNR ddPTM_HeLa_A485_30min_R1 1 IRIENMNR 8 1 J3KS15;Q14197 J3KS15 ICT1 "Peptidyl-tRNA hydrolase ICT1, mitochondrial" 0 0 52.786 0.033633 96140000 118460 161550 162390 138160 197910 165220 188180 214430 155630 179850 FALSE FALSE TRUE 144811.0183 180441.8672 222464.8186 145707.331 178205.3855 173870.6637 147973.8057 161840.7063 186863.5135 135016.7049 1.072541494 1.336441053 1.647683661 1.079180025 1.319876571 1.287771494 1.09596665 1.198671723 1.384002917 1 17.04277839 -6.20509519 1.189133907 1.190105345 1.318917095 0.078334603 0.17671307 1.324077594 3.867330848 0.088961996 0.084345425 6.24E-07 6.20509519 0.12881175 IRIFDLGR ddPTM_HeLa_A485_30min_R1 1 IRIFDLGR 8 1 X1WI28;P27635;Q96L21;B8A6G2;A6QRI9 X1WI28 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 0 108.98 0.0016353 163560000 22629 79800 54734 10247 50422 70732 68271 124060 36260 14294 FALSE FALSE TRUE 27662.74298 89131.91583 74982.38427 10806.76766 45401.80864 74435.41815 53684.34313 93634.09048 43537.0494 10730.76886 2.577890116 8.306200327 6.987605943 1.007082326 4.230993065 6.936634188 5.002842184 8.725757836 4.057216213 1 13.38946583 -4.01761478 21.558571 5.339354196 1.426282798 0.077373171 2.571421781 1775.096054 95502.12083 0.614367169 97028.25159 9.60E-05 4.01761478 -3.913071398 IRITLTSR ddPTM_HeLa_A485_30min_R1 2 IRITLTSR 8 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 0 ; ; 170.69 2.10E-05 571710000 156212 289430 214743 95056 242350 251130 306780 414540 117353 121283 FALSE FALSE TRUE 190960.8205 323276.3208 294185.3719 100248.6686 218220.7831 264278.7785 241233.9468 312873.415 140904.6707 91049.38015 2.09733246 3.550560369 3.231052989 1.101036256 2.396730024 2.902587344 2.649484779 3.436304723 1.547563206 1 16.47436158 IRITLTSR ddPTM_HeLa_A486_30min_R1 2 IRITLTSR 8 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 0 ; ; 174.48 2.79E-06 270020000 194106 140794 104171 58412 133063 80553 143430 133025 80377 176655 FALSE FALSE TRUE 180500.1718 129636.9707 144508.801 135986.088 116372.9978 70615.18986 107542.297 102738.1114 87344.14308 132419.4382 1.363094227 0.978987469 1.091295983 1.026934488 0.878821111 0.533269064 0.812133766 0.775853703 0.659602127 1 17.01475539 -5.767792222 2.355183558 0.743139231 1.122120214 0.583348442 0.144020829 0.20339879 2.3140371 0.046190447 0.058592767 1.71E-06 5.767792222 0.378980983 IRLNYSDES(ph)PEAGK ddPTM_HeLa_A486_30min_R1 1 IRLNYSDESPEAGK 14 1 Q9GZR1-2;Q9GZR1 Q9GZR1-2 SENP6 Sentrin-specific protease 6 1 0 IRLNYS(0.003)DES(0.997)PEAGK 61.167 0.013069 404010000 132380 150380 112900 53055 167160 159530 208610 174680 110990 187450 TRUE FALSE FALSE 123100.8456 138463.3411 156617.9036 123514.7213 146193.2341 139848.8106 156413.5715 134909.1772 120610.7026 140511.2999 0.876092141 0.985424953 1.114628529 0.879037638 1.04043756 0.995285153 1.113174326 0.960130447 0.858370129 1 17.10032663 -4.275070213 5.272976663 0.998618546 0.871958973 0.163206918 0.079906546 0.255486291 24.24235304 0.019791607 0.113714356 5.31E-05 4.275070213 -0.126659573 IRLS(ph)PEPWTPETGLVTDAFK ddPTM_HeLa_A485_30min_R1 2 IRLSPEPWTPETGLVTDAFK 20 1 O95573 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 1 0 IRLS(0.994)PEPWT(0.006)PETGLVTDAFK;IRLS(1)PEPWTPETGLVTDAFK ; 248.07 6.37E-47 190796000 173176 157959 91433 196744 143997 188953 206140 278760 149942 419930 TRUE FALSE FALSE 211698.4037 176430.931 125257.8715 207491.6265 129660.1531 198846.2869 162096.505 210393.6729 180033.9841 315249.1792 0.671527216 0.559655481 0.397329731 0.658182924 0.411294181 0.630759095 0.514185335 0.667388488 0.571084703 1 18.26613309 -9.403912339 0.538550457 1.062718967 0.542869102 0.664866906 0.093317025 4.712925126 1.236172834 0.666165043 0.040419811 3.95E-10 9.403912339 -0.519849865 IRLS(ph)PEPWTPETGLVTDAFK ddPTM_HeLa_A486_30min_R1 1 IRLSPEPWTPETGLVTDAFK 20 1 O95573 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 1 0 IRLS(1)PEPWTPETGLVTDAFK 230.93 2.64E-36 57510000 75508 62949 47252 18506 66739 67606 76099 62703 60398 92636 TRUE FALSE FALSE 70215.27912 57960.69198 65549.23985 43082.90324 58367.9723 59265.45909 57058.22531 48426.8957 65633.34727 69439.34264 1.011174306 0.834695286 0.943978404 0.620439388 0.840560554 0.853485313 0.821698811 0.697398533 0.94518964 1 16.08346567 -3.766004973 1.333483808 0.820311552 1.397316994 0.166932259 0.109154109 6.892379618 4.361885471 0.029935872 7.443811269 0.000171394 3.766004973 0.577005442 IRLS(ph)SSASR ddPTM_HeLa_A485_30min_R1 1 IRLSSSASR 9 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 IRLS(0.777)S(0.1)S(0.099)AS(0.025)R 62.924 0.012519 133900000 20025 26606 25888 28630 32931 23645 28654 26548 27905 33261 TRUE FALSE FALSE 24479.49216 29717.34026 35465.04849 30193.98441 29652.27401 24883.01564 22531.83882 20037.06137 33505.27754 24969.64482 0.980370059 1.190138685 1.42032651 1.209227629 1.187532871 0.99653062 0.902369216 0.802456804 1.341840374 1 14.60788768 -6.239304835 4.412731616 0.988272325 1.212592359 0.246486729 0.16270484 0.274066752 13.42619721 0.057085935 0.054653942 5.76E-07 6.239304835 0.224320034 IRLS(ph)SSASR ddPTM_HeLa_A486_30min_R1 2 IRLSSSASR 9 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 IRLS(0.84)S(0.137)S(0.023)ASR;IRLS(0.997)S(0.002)SASR ; 130.56 0.00013651 139450000 82180 95168 87388 32611 112488 97193 93706 104428 91019 101864 TRUE FALSE FALSE 76419.60638 87626.54108 121226.9739 75920.05607 98378.70613 85202.31585 70259.76768 80652.02405 98908.6002 76356.59138 1.000825273 1.147596291 1.587642556 0.994282939 1.288411444 1.115847556 0.920153276 1.056254903 1.295351173 1 16.22046508 -6.511652712 23.49328391 1.064823858 1.209502841 0.11431967 0.179237983 542.8131956 1135981.041 0.065954164 0.05479214 3.08E-07 6.511652712 0.144678983 IRLSS(ph)SASR ddPTM_HeLa_A485_30min_R1 1 IRLSSSASR 9 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 IRLS(0.162)S(0.675)S(0.162)ASR 100.04 0.00093389 120130000 24696 30700 26376 26283 42422 34591 36708 30926 29670 43697 TRUE FALSE FALSE 30189.54 34290.09795 36133.58 27718.77374 38198.31673 36402.13127 28865.03592 23341.35001 35624.49685 32804.14208 0.920296587 1.045297812 1.101494436 0.844977859 1.164435779 1.109680941 0.879920464 0.71153667 1.085975569 1 15.00159037 -6.778312397 24.98272733 0.895319514 1.032488917 0.14924449 0.12544439 387.6985169 574033.4986 0.051543798 0.034852315 1.67E-07 6.778312397 0.137169403 IRNIS(ph)GHR ddPTM_HeLa_A485_30min_R1 5 IRNISGHR 8 1 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 IRNIS(1)GHR;IRNIS(1)GHR;IRNIS(1)GHR;IRNIS(1)GHR;IRNIS(1)GHR ;;;; 97.734 0.0012757 599381000 248549 525887 404711 162451 493699 493090 568417 823261 378354 263805 TRUE FALSE FALSE 303837.8676 587384.91 554430.4403 171325.2868 444544.5941 518907.4299 446970.0644 621354.9489 454286.1773 198043.2685 1.53419942 2.965942314 2.799541962 0.86509018 2.244684192 2.620172016 2.256931366 3.137470684 2.293873358 1 17.59545614 -5.999488003 24.99999882 2.399144549 2.085598943 0.00204272 0.752415634 76.2940785 3724959.286 0.234404826 0.263404073 1.00E-06 5.999488003 -0.313545605 IRNIS(ph)GHR ddPTM_HeLa_A486_30min_R1 4 IRNISGHR 8 1 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 IRNIS(1)GHR;IRNIS(1)GHR;IRNIS(1)GHR;IRNIS(1)GHR ;;; 96.229 0.0014012 301355000 313551 273117 232091 79715 346056 202233 258061 281936 181207 297579 TRUE FALSE FALSE 291572.6941 251474.2142 321962.8508 185580.5486 302650.4296 177283.5486 193491.4083 217745.3274 196914.1687 223063.2815 1.307129941 1.127367142 1.44337001 0.83196368 1.356791793 0.794767957 0.867428324 0.976159438 0.88277267 1 17.76709353 -5.804098119 1.016235881 0.908577431 1.263429964 0.389846446 0.17503536 0.541234344 1.200515282 0.077564337 0.114161162 1.57E-06 5.804098119 0.354852533 IRNPFRGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 IRNPFRGSPK 10 2 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LPI0;A0A096LNQ0;A0A096LNR2;A0A096LNX0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 IRNPFRGS(1)PK;IRNPFRGS(1)PK ; 68.44 0.010614 1883890000 1585780 1263000 655170 662010 1085570 1214080 1746000 1513370 941100 2216200 TRUE FALSE FALSE 1474625.011 1162915.28 908869.3701 1541192.736 949407.6881 1064299.153 1309132.333 1168808.688 1022675.306 1661249.095 0.887660385 0.700024628 0.547099994 0.927731272 0.571502306 0.640661991 0.788040961 0.703572204 0.615606238 1 20.66383698 -10.10372387 5.498001315 1.000003465 0.706598038 0.34468955 0.120285639 4.92E-06 8.02E-07 0.112093095 0.027186248 7.88E-11 10.10372387 -0.293405427 IRNYLSIFR ddPTM_HeLa_A485_30min_R1 1 IRNYLSIFR 9 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 0 151.22 6.51E-05 14947000 24683 28554 30487 30664 37689 26726 42195 41254 29474 42718 FALSE FALSE TRUE 30173.64819 31893.14191 41765.40997 32339.09667 33936.55083 28125.33203 33179.69355 31136.39182 35389.16145 32069.18877 0.940892157 0.994510405 1.30235318 1.008416425 1.058229164 0.877020377 1.034628403 0.970912986 1.103525309 1 14.96890024 -5.474381107 24.99786798 1.003733855 1.084878883 0.090176376 0.103548883 898.9163152 463340.7585 0.029669583 0.044006051 3.35E-06 5.474381107 0.081145028 IRPFAVAAVLR ddPTM_HeLa_A485_30min_R1 1 IRPFAVAAVLR 11 1 Q9NSD9-2;Q9NSD9 Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit 0 0 95.483 0.0068869 13705000 11067 8832.9 8486.2 8921.8 10280 11604 14684 14995 7322.1 13365 FALSE FALSE TRUE 13528.81597 9865.830819 11625.59852 9409.175343 9256.487105 12211.5675 11546.64344 11317.45274 8791.578308 10033.35146 1.348384537 0.98330362 1.158695433 0.937789868 0.922571798 1.217097551 1.15082617 1.127983284 0.876235457 1 13.29251597 -4.253117898 24.27599142 1.051202301 1.348384762 0.407099432 0.110521375 760.933758 2219772.72 0.028061046 0.305632086 5.58E-05 4.253117898 0.297182461 IRPLEVPTTAGPASAS(ph)TPTDGAK ddPTM_HeLa_A486_30min_R1 1 IRPLEVPTTAGPASASTPTDGAK 23 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 IRPLEVPTTAGPASAS(0.499)T(0.499)PT(0.001)DGAK 160.91 1.65E-14 155620000 93479 91281 47880 38247 93993 83198 104680 106080 70024 134720 TRUE FALSE FALSE 86926.60483 84047.56112 66420.41827 89040.9489 82203.52149 72933.87666 78487.95681 81927.89971 76093.7367 100985.2351 0.860785289 0.832275738 0.657724054 0.88172245 0.814015251 0.72222317 0.777222103 0.811285923 0.753513487 1 16.62378485 -10.37945314 5.823713633 1.000051313 0.789081503 0.498829391 0.063114811 4.15E-05 4.43E-06 0.060352392 0.014634052 4.17E-11 10.37945314 -0.21096981 IRPLS(ph)DGNSPWSTILIK ddPTM_HeLa_A485_30min_R1 2 IRPLSDGNSPWSTILIK 17 1 Q5TCX8;Q5TCX8-3 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 1 0 IRPLS(0.996)DGNS(0.002)PWS(0.001)T(0.001)ILIK;IRPLS(1)DGNSPWSTILIK ; 212.39 4.93E-26 804590000 82930.3 74594.1 63356 114290 103004.7 85304 119190 112490 77569 154988.8 TRUE FALSE FALSE 101377.8591 83317.23111 86794.02086 120533.3733 92749.1904 89770.38553 93724.08281 84901.65112 93136.38679 116352.9445 0.871296034 0.71607325 0.745954657 1.035928861 0.797136598 0.771535142 0.80551535 0.729690611 0.800464373 1 16.8281482 -10.91349802 2.499893861 1.117556784 0.806547619 0.303552799 0.087134805 30073992.71 16668119.73 20742790.99 0.023376687 1.22E-11 10.91349802 -0.311009165 IRPLS(ph)DGNSPWSTILIK ddPTM_HeLa_A486_30min_R1 2 IRPLSDGNSPWSTILIK 17 1 Q5TCX8;Q5TCX8-3 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 1 0 IRPLS(0.999)DGNS(0.001)PWSTILIK;IRPLS(0.999)DGNS(0.001)PWSTILIK ; 238.03 1.37E-42 948290000 729740 723500 479740 276280 723350 687560 807430 763150 595280 827580 TRUE FALSE FALSE 678588.9944 666167.2251 665508.1759 643193.8024 632620.698 602735.8378 605402.4739 589397.4044 646879.3497 620348.5814 1.093883366 1.073859512 1.072797127 1.036826426 1.019782614 0.971608312 0.975906921 0.950106798 1.042767517 1 19.24271959 -5.609136987 1.362271625 0.984401506 1.084113569 0.737974167 0.023668102 0.206452745 0.790331107 0.00861733 0.014125409 2.46E-06 5.609136987 0.099712062 IRQEVGPPLPPLLAPLIAT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 IRQEVGPPLPPLLAPLIATPPR 22 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 IRQEVGPPLPPLLAPLIAT(1)PPR;IRQEVGPPLPPLLAPLIAT(1)PPR ; 163.06 1.10E-13 838630000 483080 611360 674040 417520 844560 703300 685010 850720 636900 583670 TRUE FALSE FALSE 590539.4794 682853.2339 923395.4451 440328.0604 760472.641 740123.7005 538652.0175 642079.5861 764719.988 438171.8107 1.347734987 1.558414342 2.107382133 1.004921014 1.735558113 1.689117562 1.229316913 1.465360323 1.74525145 1 18.74113715 -10.61050519 3.052267543 0.964900251 1.542330615 0.23758562 0.291578564 115360678.5 115187144.7 32085873.03 0.070765143 2.45E-11 10.61050519 0.577430364 IRQEVGPPLPPLLAPLIAT(ph)PPR ddPTM_HeLa_A486_30min_R1 2 IRQEVGPPLPPLLAPLIATPPR 22 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 IRQEVGPPLPPLLAPLIAT(1)PPR;IRQEVGPPLPPLLAPLIAT(1)PPR ; 144.55 2.35E-09 805880000 465330 554500 522850 194256 659880 499130 629070 600570 462420 536170 TRUE FALSE FALSE 432712.77 510559.4005 725311.5224 452237.7852 577111.6973 437552.4154 471670.0324 463833.3214 502502.9379 401909.5421 1.076642191 1.27033411 1.804663603 1.125222812 1.435924348 1.088683819 1.173572615 1.154073921 1.250288648 1 18.6165113 -6.266038511 24.80659925 1.145468969 1.352143429 0.220752539 0.195478191 587.2873178 3167673.89 0.068117426 0.062059533 5.42E-07 6.266038511 0.206674461 IRQPS(ph)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR ddPTM_HeLa_A485_30min_R1 2 IRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 40 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRQPS(0.995)VDLT(0.005)DDDQTSSVPHSAISDIMSSDQETYSCKPHGR;IRQPS(0.991)VDLT(0.009)DDDQTSSVPHSAISDIMSSDQETYSCKPHGR ; 199.47 2.36E-30 725980000 240023 241353 206171 231398 335923 248342 390940 426312 251808 431031 TRUE FALSE FALSE 293415.2883 269577.1339 282442.2324 244038.6868 302477.3266 261344.8031 307412.4753 321758.3136 302343.5559 323582.9042 0.906770056 0.833100669 0.872858945 0.7541767 0.934775363 0.807659489 0.950026937 0.994361288 0.934361958 1 18.30377586 -6.875808788 5.734256365 0.97281477 0.851339961 0.575548998 0.049971222 0.147705706 6.837366083 0.020073611 0.013447547 1.33E-07 6.875808788 -0.121474809 IRQPS(ph)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR ddPTM_HeLa_A486_30min_R1 2 IRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 40 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRQPS(1)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR;IRQPS(1)VDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR ; 280.76 8.20E-80 1042650000 204220 176465 104829 25357.5 182755 163942 247930 244750 151645 173400 TRUE FALSE FALSE 189905.2326 162481.2707 145421.5962 59033.5415 159832.1638 143716.5029 185895.2917 189025.7679 164789.7107 129979.5114 1.461039749 1.250052943 1.118803992 0.454175746 1.229671985 1.105685822 1.430189187 1.454273569 1.267812973 1 16.9879247 -6.687905931 7.545985091 1.32541843 1.085577063 0.093301393 0.269375056 0.488378383 42.71263229 0.108759824 0.083791994 2.05E-07 6.687905931 -0.239841367 IRQPSVDLTDDDQTSSVPHSAISDIMS(ph)SDQETYSCKPHGR ddPTM_HeLa_A485_30min_R1 1 IRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 40 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRQPSVDLTDDDQTSSVPHSAISDIMS(0.5)S(0.5)DQETYSCKPHGR 206.23 1.36E-30 223950000 53132 84869 74931 32156 112890 72960 96686 117410 86181 72429 TRUE FALSE FALSE 64951.0301 94793.69129 102651.095 33912.60086 101650.2752 76780.07278 76028.24625 88615.01341 103476.7362 54373.78326 1.194528433 1.743371265 1.887878475 0.623693972 1.869472182 1.412078913 1.398251909 1.629737864 1.903063021 1 15.73062359 IRQPSVDLTDDDQTSSVPHSAISDIMS(ph)SDQETYSCKPHGR ddPTM_HeLa_A486_30min_R1 1 IRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 40 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRQPSVDLTDDDQTSSVPHSAISDIMS(0.5)S(0.5)DQETYSCKPHGR 247.09 1.13E-52 703480000 93424 88909 71993 2986.2 112910 42234 80603 64826 79318 35032 TRUE FALSE FALSE 86875.46004 81863.52704 99870.61764 6952.024514 98747.77496 37023.59848 60435.27687 50066.53494 86193.3481 26259.75918 3.308311377 3.117451553 3.803181018 0.264740604 3.760421955 1.40989863 2.301440636 1.906587741 3.282335817 1 14.68056607 IRQPSVDLTDDDQTSSVPHSAISDIMSS(ph)DQETYSCKPHGR ddPTM_HeLa_A486_30min_R1 1 IRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCKPHGR 40 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 IRQPSVDLTDDDQTSSVPHSAISDIMS(0.208)S(0.788)DQET(0.003)YS(0.001)CKPHGR 111.73 4.68E-06 165640000 120250 118580 97707 13489 130760 83800 119070 99636 118720 48678 TRUE FALSE FALSE 111821.096 109183.2889 135541.7671 31403.0737 114358.8615 73461.60802 89277.42661 76951.05784 129010.7452 36488.71196 3.064539414 2.992248372 3.71462186 0.860624341 3.134088746 2.013269421 2.446713567 2.108900361 3.535634399 1 15.1551626 -5.205512444 24.99978952 2.250020359 3.230647717 0.280427287 0.797538135 408.9552068 182805.386 0.20286477 0.351371863 6.23E-06 5.205512444 0.980627358 IRS(ph)EDEEDLGNARPSAPSTLFDFLESK ddPTM_HeLa_A485_30min_R1 1 IRSEDEEDLGNARPSAPSTLFDFLESK 27 2 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 0 IRS(0.951)EDEEDLGNARPS(0.033)APS(0.008)T(0.008)LFDFLESK 83.992 0.0022902 55008000 37077 35013 23422 50514 45416 36481 55607 61333 33794 58592 TRUE FALSE FALSE 45324.65074 39107.46578 32086.77247 53273.45191 40894.22357 38391.08875 43726.11018 46290.98558 40576.14582 43986.09271 1.030431392 0.889087058 0.729475398 1.211143083 0.929708029 0.872800615 0.994089438 1.052400492 0.922476704 1 15.42475983 -5.236989305 24.99476188 0.991535626 0.883606919 0.185220256 0.10956457 1456.636712 1489085.257 0.029900042 0.051757743 5.79E-06 5.236989305 -0.107928707 IRS(ph)EDEEDLGNARPSAPSTLFDFLESK ddPTM_HeLa_A486_30min_R1 1 IRSEDEEDLGNARPSAPSTLFDFLESK 27 2 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 0 IRS(0.997)EDEEDLGNARPS(0.003)APSTLFDFLESK 135.72 1.42E-06 72510000 49996 54145 26807 24696 48160 55767 77247 63434 44338 73402 TRUE FALSE FALSE 46491.53858 49854.35301 37187.38832 57493.53607 42119.32373 48887.03454 57918.98356 48991.46295 48181.25354 55021.66143 0.844967916 0.906085925 0.675868146 1.044925482 0.765504396 0.888505241 1.052657845 0.890403192 0.875677911 1 15.74771208 -6.530615823 24.9624548 0.949127375 0.849647233 0.201546321 0.100384232 317.4210449 1024096.557 0.036786629 0.028551352 2.95E-07 6.530615823 -0.099480142 IRS(ph)LT(ph)EYMQSVELK ddPTM_HeLa_A485_30min_R1 1 IRSLTEYMQSVELK 14 1 J3KNA1;Q12840 J3KNA1 KIF5A Kinesin-like protein;Kinesin heavy chain isoform 5A 2 0 IRS(0.728)LT(0.741)EY(0.311)MQS(0.22)VELK 62.765 0.017162 605810000 679890 816840 719240 413850 1072300 886620 969270 1055100 855830 531210 TRUE FALSE FALSE 831129.1849 912362.3324 985316.8061 436457.5776 965538.0469 933042.0522 762177.5463 796335.0707 1027587.231 398789.1232 2.08413203 2.287831536 2.470771515 1.094457076 2.421174477 2.339687815 1.911229524 1.996882624 2.57676845 1 18.60526654 -10.29027664 5.242491404 0.999786993 2.11973058 0.416760856 0.401327574 0.000984201 0.000133241 0.382767476 0.092817717 5.13E-11 10.29027664 1.119943587 IRS(ph)SVEKENQK ddPTM_HeLa_A485_30min_R1 3 IRSSVEKENQK 11 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IRS(0.636)S(0.364)VEKENQK;IRS(0.625)S(0.375)VEKENQK;IRS(0.5)S(0.5)VEKENQK ;; 174.44 1.22E-08 4754900000 1602420 1478540 1074650 2493710 2432960 2204740 3899910 4414680 1632290 3467590 TRUE FALSE FALSE 1958872.801 1651442.391 1472207.755 2629935.063 2190725.96 2320176.777 3066662.369 3331972.808 1959875.631 2603183.629 0.752491211 0.634393353 0.565541262 1.01027643 0.841556445 0.89128433 1.178043045 1.279960726 0.752876443 1 21.31184565 -5.645929551 1.060174805 1.051508939 0.645195051 0.455154397 0.160409943 0.461505387 1.089169322 0.069577356 0.121370259 2.26E-06 5.645929551 -0.406313888 IRS(ph)SVEKENQK ddPTM_HeLa_A486_30min_R1 1 IRSSVEKENQK 11 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IRS(0.91)S(0.09)VEKENQK 190.34 5.71E-11 3535600000 2237100 2218400 1042200 1574500 2648200 2761000 4195300 4034700 1834600 4221700 TRUE FALSE FALSE 2080290.842 2042605.905 1445767.751 3665515.571 2316038.063 2420375.892 3145591.567 3116086.887 1993624.605 3164558.841 0.657371516 0.645463083 0.456862338 1.158302233 0.731867593 0.764838328 0.994006345 0.984682871 0.629985001 1 21.59357296 -5.243923057 24.98892449 0.886101777 0.592455392 0.455327391 0.154248438 776.6107524 1107917.674 0.041041983 0.070878537 5.70E-06 5.243923057 -0.293646384 IRSS(ph)VEK ddPTM_HeLa_A485_30min_R1 8 IRSSVEK 7 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IRS(0.023)S(0.977)VEK;IRS(0.051)S(0.949)VEK;IRS(0.038)S(0.962)VEK;IRS(0.112)S(0.888)VEK;IRS(0.167)S(0.833)VEK;IRS(0.079)S(0.921)VEK;IRS(0.163)S(0.837)VEK;IRS(0.308)S(0.692)VEK ;;;;;;; 105.35 0.0016802 16675650000 8627900 8236620 5302370 11473420 6209140 7156580 9809280 8667180 6746310 12814520 TRUE FALSE FALSE 10547146.59 9199821.06 7263937.313 12100183.88 5590936.22 7531287.463 7713447.194 6541540.515 8100232.536 9620095.998 1.096366044 0.956312812 0.755079504 1.257802821 0.581172602 0.782870302 0.801805636 0.679987031 0.842011612 1 23.19761986 -5.774078714 24.99999574 0.766410272 0.99343405 0.34780244 0.155647817 257.820568 509954.972 0.046258959 0.052797578 1.68E-06 5.774078714 0.227023778 IRSS(ph)VEK ddPTM_HeLa_A486_30min_R1 8 IRSSVEK 7 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IRS(0.008)S(0.992)VEK;IRS(0.294)S(0.706)VEK;IRS(0.048)S(0.952)VEK;IRS(0.044)S(0.956)VEK;IRS(0.491)S(0.509)VEK;IRS(0.221)S(0.779)VEK;IRS(0.004)S(0.996)VEK;IRS(0.143)S(0.857)VEK ;;;;;;; 112.95 0.00057477 14991830000 10434400 8285129 5175419 3834950 5901848 11069660 10392940 8086130 8442090 13457680 TRUE FALSE FALSE 9703002.443 7628585.204 7179479.839 8927957.408 5161583.191 9703997.897 7792516.487 6245094.718 9173857.158 10087789.33 0.961856173 0.756219718 0.711700017 0.885026155 0.511666434 0.961954852 0.772470184 0.619074657 0.909402135 1 23.26610672 -7.992307016 23.97440927 1.000000036 0.770856798 0.241180748 0.134152042 110.9073976 345628.6933 0.12283683 0.031716333 1.02E-08 7.992307016 -0.229143238 IRSS(ph)VEKENQK ddPTM_HeLa_A485_30min_R1 3 IRSSVEKENQK 11 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IRS(0.215)S(0.785)VEKENQK;IRS(0.132)S(0.868)VEKENQK;IRS(0.131)S(0.869)VEKENQK ;; 213.69 9.90E-16 11797800000 3109270 2857860 1867290 4913050 4821720 4652690 7737400 8651700 3313680 7086200 TRUE FALSE FALSE 3800916.385 3192061.867 2558078.275 5181437.481 4341652.627 4896297.654 6084241.281 6529857.01 3978705.181 5319740.752 0.714492785 0.60004087 0.480865214 0.974001878 0.816139889 0.920401554 1.14371011 1.227476547 0.74791336 1 22.34292451 -5.615670082 1.262640201 1.026616918 0.599107654 0.533418347 0.152538988 0.343938821 1.136212268 0.059145111 0.099206421 2.42E-06 5.615670082 -0.427509264 IRSS(ph)VEKENQK ddPTM_HeLa_A486_30min_R1 5 IRSSVEKENQK 11 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 IRS(0.013)S(0.987)VEKENQK;IRS(0.091)S(0.909)VEKENQK;IRS(0.16)S(0.84)VEKENQK;IRS(0.132)S(0.868)VEKENQK;IRS(0.055)S(0.945)VEKENQK ;;;; 184.44 1.08E-10 13608900000 5091260 4305300 2077900 3047220 4869670 5381500 7933440 7560580 3409670 7686790 TRUE FALSE FALSE 4734388.965 3964132.348 2882518.528 7094082.158 4258870.581 4717585.245 5948409.401 5839200.98 3705222.941 5761967.751 0.82166183 0.687982391 0.500266342 1.231190882 0.739134748 0.818745513 1.032357288 1.013403968 0.643048191 1 22.45813016 -5.238721801 24.98531042 0.918220185 0.671771439 0.315444524 0.172208096 998.6299567 1098314.477 0.045817669 0.07928435 5.77E-06 5.238721801 -0.246448746 IRSTST(ph)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR ddPTM_HeLa_A485_30min_R1 2 IRSTSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 38 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 IRS(0.214)T(0.214)S(0.214)T(0.357)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR;IRS(0.178)T(0.178)S(0.178)T(0.267)PNVHMVS(0.066)T(0.066)T(0.066)APMDSNLIQLTGQSFSTDAAGSR ; 351.64 1.08E-149 1554390000 100731 296160 226050 45698 256870 280270 330300 564000 173904 97935 TRUE FALSE FALSE 123138.2634 330793.3358 309675.3017 48194.36603 231295.1209 294944.5038 259728.7067 425678.1157 208804.9377 73521.60686 1.674858163 4.499266949 4.212031197 0.655512959 3.145947576 4.011671078 3.532685394 5.789836945 2.840048614 1 16.16588068 -6.011882858 24.65857422 3.722381642 2.852360698 0.023565154 1.528318492 1488.724315 3089313.353 0.488145685 0.515020261 9.73E-07 6.011882858 -0.870020944 IRSTST(ph)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR ddPTM_HeLa_A486_30min_R1 1 IRSTSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 38 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 IRS(0.218)T(0.218)S(0.218)T(0.346)PNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 352.8 9.78E-150 329180000 74699 52879 51120 8747.1 97247 30936 57453 66085 31904 53427 TRUE FALSE FALSE 69462.98585 48688.67546 70915.03304 20363.69085 85049.37447 27119.43085 43077.65172 51038.88813 34669.46441 40048.53145 1.734470237 1.215741844 1.770727427 0.508475345 2.123657757 0.677164177 1.075636238 1.27442596 0.865686285 1 15.28946172 -1 0.245596305 0.966702012 5.161061879 0.174512849 0.443529983 92.33380237 1.245864885 0.554612224 159.0984432 0.1 1 4.194359868 IRT(ph)LTEPSVDFNHSDDFTPISTVQK ddPTM_HeLa_A486_30min_R1 1 IRTLTEPSVDFNHSDDFTPISTVQK 25 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 IRT(0.495)LT(0.495)EPS(0.008)VDFNHS(0.001)DDFTPISTVQK 132.51 4.69E-06 471040000 335390 289750 251020 113740 397440 232750 360090 396520 180820 360430 TRUE FALSE FALSE 311880.893 266789.1547 348221.6665 264792.4681 347589.3692 204035.6714 269991.6734 306241.052 196493.6232 270175.982 1.154362022 0.987464366 1.28886981 0.980074047 1.286529493 0.755195447 0.99931782 1.133487328 0.72728013 1 18.0435399 -6.256961754 24.99942355 0.93616546 1.130461518 0.34853757 0.147128673 484.2795013 2703827.915 0.047194611 0.045673822 5.53E-07 6.256961754 0.194296058 IRT(ph)PEKKPTEPK ddPTM_HeLa_A486_30min_R1 2 IRTPEKKPTEPK 12 3 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 IRT(0.997)PEKKPT(0.003)EPK;IRT(0.999)PEKKPT(0.001)EPK ; 69.729 0.015638 1773240000 1482220 1176590 352020 1162980 1010100 1855800 2553500 2246030 931250 2925100 TRUE FALSE FALSE 1378324.032 1083352.723 488331.5714 2707476.214 883403.8392 1626850.264 1914587.292 1734657.999 1011971.5 2192635.921 0.628615093 0.494086918 0.22271439 1.234804277 0.402895816 0.741960965 0.873189787 0.791129062 0.461531935 1 21.06423485 -5.225492416 24.99993082 0.763571637 0.453033696 0.283128688 0.24455627 824.4511968 573377.7652 0.063800785 0.110501605 5.95E-06 5.225492416 -0.310537942 IRT(ph)SPTFR ddPTM_HeLa_A486_30min_R1 2 IRTSPTFR 8 1 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 1 0 IRT(0.613)S(0.384)PT(0.003)FR;IRT(0.633)S(0.365)PT(0.002)FR ; 100.55 0.0025404 2607060000 96958 100520 86387 32094 122940 89462 96158 104009 86603 112620 TRUE FALSE FALSE 90161.74489 92554.42911 119838.3599 74716.45394 107519.7188 78425.08802 72098.25134 80328.4212 94109.81777 84419.21897 1.068023917 1.096366802 1.419562528 0.885064501 1.273640294 0.92899566 0.854050206 0.951541867 1.114791382 1 16.36528386 -6.281932409 24.43456497 0.95960807 1.146053783 0.27816747 0.143393252 803.9329916 958554.3826 0.049453216 0.043669961 5.22E-07 6.281932409 0.186445713 IRTLT(ph)EPSVDFNHSDDFTPISTVQK ddPTM_HeLa_A485_30min_R1 1 IRTLTEPSVDFNHSDDFTPISTVQK 25 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 IRT(0.387)LT(0.612)EPS(0.001)VDFNHSDDFTPISTVQK 205.58 1.77E-28 600550000 328580 466440 354500 182460 486560 506170 652870 966980 329510 300070 TRUE FALSE FALSE 401671.4874 520986.1005 485644.302 192427.3278 438116.378 532672.2785 513378.991 729826.6388 395639.6346 225268.0714 1.783082196 2.312738318 2.155850578 0.854214832 1.944866733 2.364615079 2.278969176 3.239813944 1.756305863 1 17.78128332 -6.124392082 5.458426818 2.273730794 1.792820275 0.037833274 0.641926288 0.544465406 22.01916991 0.211919336 0.212786218 7.51E-07 6.124392082 -0.480910518 IRTLTEPS(ph)VDFNHSDDFTPISTVQK ddPTM_HeLa_A485_30min_R1 1 IRTLTEPSVDFNHSDDFTPISTVQK 25 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 IRT(0.285)LT(0.285)EPS(0.372)VDFNHS(0.058)DDFTPISTVQK 90.534 0.0019525 69870000 167190 259490 162570 121120 228410 240980 321820 436340 144450 167060 TRUE FALSE FALSE 204380.8387 289835.0982 222711.4081 127736.4789 205668.6984 253597.3402 253060.528 329326.9308 173439.79 125415.0165 1.629636102 2.311007934 1.77579539 1.018510243 1.639904886 2.022065198 2.017784911 2.625897121 1.38292682 1 16.93635057 -6.252502906 23.51121972 1.924356507 1.679437613 0 0.500704513 1041.410538 2739874.692 0.167821833 0.165230587 5.59E-07 6.252502906 -0.244918894 IRTPS(ph)GEFLER ddPTM_HeLa_A485_30min_R1 4 IRTPSGEFLER 11 1 B3KT28;Q9UNN5;B1ANM7;Q9UNN5-2 B3KT28 FAF1 FAS-associated factor 1 1 0 IRTPS(1)GEFLER;IRT(0.001)PS(0.999)GEFLER;IRTPS(1)GEFLER;IRTPS(1)GEFLER ;;; 239.51 4.39E-22 1721040000 482387 656445 672370 517677 787390 676913 800180 896230 649262 646719 TRUE FALSE FALSE 589692.3239 733210.5324 921107.6427 545956.3837 708994.6869 712355.118 629215.0061 676428.1873 779562.928 485503.8553 1.214598643 1.510205376 1.897220038 1.124515033 1.460327615 1.467249148 1.296004139 1.393249878 1.605678141 1 18.88912323 -10.79023857 2.654312556 0.877218636 1.442821038 0.296186607 0.20392681 14667955.75 10360194.82 11623266.26 0.049955414 1.62E-11 10.79023857 0.565602402 IRTPS(ph)GEFLER ddPTM_HeLa_A486_30min_R1 5 IRTPSGEFLER 11 1 B3KT28;Q9UNN5;B1ANM7;Q9UNN5-2 B3KT28 FAF1 FAS-associated factor 1 1 0 IRTPS(1)GEFLER;IRT(0.002)PS(0.998)GEFLER;IRT(0.001)PS(0.999)GEFLER;IRT(0.001)PS(0.999)GEFLER;IRT(0.006)PS(0.994)GEFLER ;;;; 209.66 2.23E-15 1697150000 688878 742818 674851 265066 934783 700590 823652 841738 659321 800958 TRUE FALSE FALSE 640591.2096 683954.3964 936171.3803 617087.0437 817533.7996 614158.3289 617565.5579 650092.6324 716471.4751 600392.9034 1.066953333 1.139178016 1.559264567 1.027805359 1.361664662 1.022927362 1.028602361 1.082778675 1.193337681 1 19.1955474 -6.281105664 24.67685279 1.068394947 1.232824775 0.232557792 0.150208151 1094.046365 1372781.996 0.052252256 0.046152632 5.23E-07 6.281105664 0.164429828 IRTS(ph)PTFR ddPTM_HeLa_A485_30min_R1 9 IRTSPTFR 8 1 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 1 0 IRT(0.097)S(0.903)PT(0.001)FR;IRT(0.029)S(0.97)PTFR;IRT(0.115)S(0.885)PTFR;IRT(0.001)S(0.999)PTFR;IRT(0.135)S(0.865)PT(0.001)FR;IRT(0.065)S(0.935)PTFR;IRT(0.132)S(0.868)PTFR;IRT(0.035)S(0.962)PT(0.003)FR;IRT(0.006)S(0.994)PTFR ;;;;;;;; 115.89 0.0004663 28905380000 686396 1030001 1094133 730983 1133398 1059028 1184680 1298880 852098 1093067 TRUE FALSE FALSE 839082.4222 1150450.657 1498898.327 770914.7503 1020552.916 1114477.069 931563.4401 980327.6434 1023106.253 820585.5133 1.022541111 1.40198753 1.826620508 0.93946912 1.243688682 1.358148603 1.135242367 1.194668475 1.246800286 1 19.64629416 -8.250847322 0.278840779 0.949283741 1.360295252 0.119387495 0.228425878 6.306861055 1.296671443 0.866328478 0.405412346 5.61E-09 8.250847322 0.411011511 IRTS(ph)PTFR ddPTM_HeLa_A486_30min_R1 6 IRTSPTFR 8 1 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 1 0 IRT(0.044)S(0.953)PT(0.002)FR;IRT(0.118)S(0.882)PTFR;IRT(0.055)S(0.945)PTFR;IRT(0.278)S(0.721)PT(0.001)FR;IRT(0.041)S(0.958)PTFR;IRT(0.109)S(0.888)PT(0.004)FR ;;;;; 103.69 0.00077849 23290060000 565802 647190 549594 173976 698383 559370 610092 673289 508331 601406 TRUE FALSE FALSE 526142.2016 595904.3074 762411.5154 405024.9203 610785.292 490360.6167 457440.5287 519995.7925 552393.5404 450810.0231 1.167104045 1.321852392 1.691203559 0.898438144 1.354861828 1.087732285 1.014707982 1.153469901 1.225335534 1 18.78216007 -5.272975602 24.99276454 1.117267054 1.386233258 0.376257438 0.169599093 794.3453154 1720915.709 0.047132929 0.070587707 5.33E-06 5.272975602 0.268966205 IRVDFSITK ddPTM_HeLa_A485_30min_R1 2 IRVDFSITK 9 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ; ; 132.32 0.00053698 114289000 215813 253210 189157 218174 298760 243190 307150 324810 156102 297110 FALSE FALSE TRUE 263819.8573 282820.7069 259134.0458 230092.2932 269014.4054 255923.0524 241524.8933 245149.8382 187430.2395 223045.9449 1.182804993 1.267993045 1.161796714 1.031591465 1.206094132 1.147400606 1.08284817 1.09910018 0.840321216 1 17.76698139 -7.617821936 4.780328647 0.922651984 1.152152072 0.62856117 0.07075171 0.139096215 5.305888728 0.054092513 0.018982183 2.41E-08 7.617821936 0.229500088 IRVDFSITK ddPTM_HeLa_A486_30min_R1 2 IRVDFSITK 9 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ; ; 131.82 0.00056548 83457000 245980 192222 137109 91805 202482 196187 238760 220430 175799 263290 FALSE FALSE TRUE 228738.0722 176989.6287 190201.2767 213726.6796 177084.8195 171983.4426 179019.7227 170242.901 191037.3989 197360.4703 1.158986255 0.896783578 0.963725291 1.082925468 0.897265898 0.87141788 0.907069802 0.86259878 0.967961814 1 17.59047353 -5.784410001 24.99297192 0.908001416 1.011983628 0.315310557 0.076037695 284.9671602 310054.34 0.022947347 0.026035854 1.64E-06 5.784410001 0.103982212 IRVDVADQAQDKDRDDR ddPTM_HeLa_A485_30min_R1 4 IRVDVADQAQDKDRDDR 17 3 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;; ;;; 206.62 2.08E-25 4473910000 2071690 2181960 1640660 2396890 2740460 2647390 3536740 4125660 2007600 3383610 FALSE FALSE TRUE 2532530.293 2437121.241 2247608.408 2527826.031 2467610.18 2786003.247 2781086.606 3113835.416 2410506.905 2540138.298 0.997004886 0.959444312 0.884837022 0.995152915 0.971447178 1.096791954 1.094856374 1.22585271 0.948966797 1 21.27647562 -6.21561455 4.344865725 1.089223873 0.957230183 0.353343006 0.074005958 0.213132084 8.936640807 0.024702882 0.024096823 6.09E-07 6.21561455 -0.13199369 IRVDVADQAQDKDRDDR ddPTM_HeLa_A486_30min_R1 3 IRVDVADQAQDKDRDDR 17 3 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;; ;; 233.63 6.70E-36 2414580000 1928760 1523210 1047540 921800 1974520 2070990 2457220 2538460 1370260 2679440 FALSE FALSE TRUE 1793563.884 1402505.292 1453175.542 2145996.985 1726857.29 1815492.31 1842397.566 1960508.072 1489035.24 2008490.784 0.892990846 0.698288139 0.723516161 1.068462451 0.859778548 0.903908708 0.917304466 0.976110066 0.741370213 1 20.93768041 -5.231181664 24.99269889 0.919079409 0.764267336 0.349434501 0.094884172 742.0824005 612955.0133 0.024611674 0.042621863 5.87E-06 5.231181664 -0.154812074 IRVMLYPSR ddPTM_HeLa_A485_30min_R1 2 IRVMLYPSR 9 1 P18077 P18077 RPL35A 60S ribosomal protein L35a 0 0 ; ; 150.61 7.24E-05 48935000 25289 45078 35241 23730 36244 34450 42310 45093 28384 29939 FALSE FALSE TRUE 30914.4508 50349.47997 48278.1124 25026.30981 32635.4201 36253.74873 33270.12286 34033.87105 34080.40845 22475.75829 1.375457522 2.240168244 2.148008169 1.11348011 1.452027544 1.6130156 1.480266981 1.514247956 1.516318516 1 14.45608217 -7.245984828 0.067277891 1.80E-08 2.945614863 0.299597555 0.310678905 28.67262848 1.854272213 38.0816951 40.30472763 5.68E-08 7.245984828 2.945614845 IRVMLYPSRI ddPTM_HeLa_A485_30min_R1 1 IRVMLYPSRI 10 2 P18077 P18077 RPL35A 60S ribosomal protein L35a 0 0 147.91 0.0011958 49992000 43534 140470 93343 28329 91710 106550 132390 201730 49627 37776 FALSE FALSE TRUE 53217.98811 156896.7446 127874.46 29876.54154 82579.03039 112128.7932 104103.795 152255.4012 59586.68369 28359.13842 1.876572812 5.532493346 4.509109485 1.053506672 2.911901948 3.953885749 3.670908243 5.368830286 2.101145769 1 14.79152608 -9.083961021 15.62715562 1.000000002 3.527520649 0.210897188 1.408407119 0 0 1.366918457 0.331526422 8.24E-10 9.083961021 2.527520647 IRVMLYPSRI ddPTM_HeLa_A486_30min_R1 1 IRVMLYPSRI 10 2 P18077 P18077 RPL35A 60S ribosomal protein L35a 0 0 128.01 0.0054685 21312000 63798 36489 31058 19329 46887 24943 39255 41518 18602 59851 FALSE FALSE TRUE 59326.08965 33597.47875 43084.48936 44998.88883 41005.99526 21865.78626 29432.9838 32065.25773 20214.43634 44863.92004 1.322356352 0.748875237 0.960337156 1.003008404 0.914008299 0.487380199 0.656050202 0.714722604 0.450572226 1 15.45326806 -6.109689834 5.548990874 0.644797231 0.983511957 0.42658204 0.191058446 0.219193001 9.40259218 0.060081691 0.060399577 7.77E-07 6.109689834 0.338714727 IS(ph)APNVDFNLEGPK ddPTM_HeLa_A485_30min_R1 6 ISAPNVDFNLEGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK ;;;;; 321.26 3.92E-69 18708650000 3601680 2483350 1593750 4940230 3193110 2779720 4751470 4278740 2554230 6943510 TRUE FALSE FALSE 4402861.29 2773756.18 2183344.446 5210102.256 2875192.757 2925261.841 3736279.619 3229372.306 3066840.532 5212620.743 0.844654063 0.532123152 0.418857338 0.999516848 0.551582956 0.561188313 0.71677565 0.619529497 0.588349063 1 22.31357747 -10.20135722 4.344948277 1.000117975 0.644038364 0.304526041 0.159451544 214698698.8 491782.684 258931.8287 0.037563102 6.29E-11 10.20135722 -0.356079611 IS(ph)APNVDFNLEGPK ddPTM_HeLa_A486_30min_R1 8 ISAPNVDFNLEGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK ;;;;;;; 267.92 2.94E-42 20115740000 5319990 5708950 2611083 3513613 4840770 6549960 9005090 7921270 4011430 7505200 TRUE FALSE FALSE 4947086.173 5256552.01 3622164.265 8179868.632 4233595.488 5741892.53 6751921.236 6117769.741 4359143.982 5625849.069 0.879349252 0.934357098 0.643843128 1.453979396 0.752525607 1.020626835 1.200160394 1.087439365 0.774841971 1 22.42363942 IS(ph)ASS(ph)ATR ddPTM_HeLa_A485_30min_R1 2 ISASSATR 8 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 2 0 IS(1)AS(0.028)S(0.972)ATR;IS(0.992)AS(0.236)S(0.772)ATR ; 141.1 0.00086209 1294730000 2563600 2774800 2239840 3178200 3870200 2620100 3820000 4005600 2707400 3921400 TRUE FALSE FALSE 3133863.976 3099288.722 3068450.024 3351817.018 3484869.299 2757284.385 3003825.793 3023220.319 3250750.346 2943867.148 1.064539878 1.052795037 1.042319463 1.138576182 1.183772611 0.936619843 1.020367307 1.026955419 1.104244921 1 21.48928114 -6.265020731 24.99989957 1.01949283 1.093316676 0.341438078 0.054579121 439.0909209 3065092.82 0.020173503 0.018507341 5.43E-07 6.265020731 0.073823846 IS(ph)ASS(ph)ATR ddPTM_HeLa_A486_30min_R1 2 ISASSATR 8 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 2 0 IS(1)AS(0.343)S(0.657)ATR;IS(1)AS(0.23)S(0.77)ATR ; 124.18 0.0013057 1425580000 2647600 3371800 2419600 1404680 3265800 3153700 3926600 3830100 2370100 2955900 TRUE FALSE FALSE 2462016.912 3104606.288 3356533.919 3270166.029 2856172.912 2764628.558 2944123.149 2958069.84 2575542.176 2215723.4 1.111157156 1.401170511 1.514870457 1.475890911 1.289047591 1.247731805 1.328741281 1.3350357 1.162393364 1 21.07934636 -8.182670805 0.708790069 0.993917287 1.364101256 0.483692329 0.110162783 0.850417119 0.922107358 0.118167775 0.044782226 6.57E-09 8.182670805 0.370183969 IS(ph)ASSATR ddPTM_HeLa_A485_30min_R1 7 ISASSATR 8 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 IS(1)ASSATR;IS(1)ASSATR;IS(1)ASSATR;IS(0.999)AS(0.001)SATR;IS(0.994)AS(0.003)S(0.003)ATR;IS(1)ASSATR;IS(0.968)AS(0.031)S(0.002)ATR ;;;;;; 197.79 2.18E-09 12763260000 3198220 3545270 3199900 3428330 4814620 3446640 4753170 4920750 3534040 4504430 TRUE FALSE FALSE 3909653.005 3959858.487 4383676.169 3615610.987 4335259.528 3627100.741 3737616.4 3713928.347 4243289.412 3381558.499 1.15616897 1.171015817 1.296347873 1.069214384 1.282030025 1.072612153 1.105294024 1.098288954 1.254832472 1 21.68925688 -6.287039433 24.93776439 1.112291613 1.19227276 0.216326313 0.083984233 1288.951804 1255601.384 0.028247725 0.024920451 5.16E-07 6.287039433 0.079981146 IS(ph)ASSATR ddPTM_HeLa_A486_30min_R1 7 ISASSATR 8 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 IS(0.999)AS(0.001)SATR;IS(1)ASSATR;IS(1)ASSATR;IS(1)ASSATR;IS(1)ASSATR;IS(0.995)AS(0.005)SATR;IS(0.998)AS(0.002)SATR ;;;;;; 196.06 2.64E-06 16020860000 5707490 6857140 5393090 2599820 7438990 6385860 7601740 7621030 5077620 5682590 TRUE FALSE FALSE 5307424.425 6313755.253 7481438.88 6052512.348 6505922.508 5598037.52 5699704.249 5885887.835 5517752.19 4259632.477 1.245981773 1.482230049 1.756357836 1.420900132 1.527343625 1.314206695 1.338074184 1.381783022 1.295358748 1 22.02229753 -8.357163161 0.426035875 0.96776569 1.50014166 0.539173184 0.127172233 1.476746277 0.567045332 0.243138279 0.091974273 4.39E-09 8.357163161 0.53237597 IS(ph)CESMGASK ddPTM_HeLa_A485_30min_R1 1 ISCESMGASK 10 0 Q9GZX9 Q9GZX9 TWSG1 Twisted gastrulation protein homolog 1 1 0 IS(0.5)CES(0.5)MGASK 82.171 0.0034617 903860000 390750 1204400 1761600 248290 627400 1278000 505450 974950 1248900 286270 TRUE FALSE FALSE 477670.9894 1345244.103 2413289.146 261853.454 564933.8531 1344914.104 397456.4784 735841.9838 1499542.774 214908.1574 2.222675003 6.25962327 11.2293976 1.21844353 2.628722241 6.258087734 1.849424811 3.423983495 6.97759821 1 17.71336072 -5.299085085 24.99912263 3.467875293 6.539480875 0.22485246 2.743861633 861.2318433 571910.4404 0.776291289 1.151453722 5.02E-06 5.299085085 3.071605582 IS(ph)DAELEAELEK ddPTM_HeLa_A485_30min_R1 5 ISDAELEAELEK 12 0 Q8WUX9 Q8WUX9 CHMP7 Charged multivesicular body protein 7 1 0 IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK ;;;; 268.35 5.07E-34 1188946000 1081510 700214 513763 1590003 890256 712241 1283903 971806 665072 1988350 TRUE FALSE FALSE 1322088.168 782097.9362 703825.3132 1676860.838 801618.9868 749532.8374 1009586.636 733469.0548 798545.85 1492690.938 0.885707908 0.523951688 0.471514428 1.123381134 0.537029446 0.502135317 0.67635343 0.49137369 0.534970656 1 20.50948406 -10.10733988 4.848301347 1.00001719 0.634264477 0.226958587 0.200019169 3.70E-05 6.82E-06 0.192937794 0.046792091 7.81E-11 10.10733988 -0.365752713 IS(ph)DAELEAELEK ddPTM_HeLa_A486_30min_R1 4 ISDAELEAELEK 12 0 Q8WUX9 Q8WUX9 CHMP7 Charged multivesicular body protein 7 1 0 IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK ;;; 249.32 2.31E-28 1257150000 1156070 1188290 506174 679744 869370 1344840 1778250 1497360 799262 1674890 TRUE FALSE FALSE 1075035.463 1094125.573 702178.1286 1582478.384 760325.508 1178927.314 1333313.042 1156443.815 868542.6737 1255486.642 0.856269933 0.87147528 0.559287614 1.260450196 0.605602228 0.939020197 1.06198903 0.921112002 0.691797622 1 20.25981525 -5.205621016 24.99999057 0.915321421 0.773257802 0.133482286 0.188838852 693.5983992 310648.1746 0.04963236 0.085965729 6.23E-06 5.205621016 -0.142063619 IS(ph)DAHLADTMIGK ddPTM_HeLa_A485_30min_R1 6 ISDAHLADTMIGK 13 0 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK ;;;;; 255.91 2.39E-41 1933287000 2434680 2033750 1620836 3180980 3367540 2481790 3902710 3940050 2105730 4394170 TRUE FALSE FALSE 2976266.166 2271579.371 2220450.685 3354748.883 3032255.893 2611732.687 3068864.126 2973746.56 2528330.696 3298784.288 0.902231218 0.688611068 0.673111817 1.016965218 0.919204055 0.791725817 0.930301547 0.90146742 0.766443173 1 21.65350301 -5.250486924 24.97037975 0.896709191 0.74804734 0.345012654 0.093647767 823.1813885 1876758.763 0.025312504 0.043312316 5.62E-06 5.250486924 -0.148661851 IS(ph)DAHLADTMIGK ddPTM_HeLa_A486_30min_R1 5 ISDAHLADTMIGK 13 0 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK ;;;; 246.18 2.31E-35 2276705000 2514370 2758810 1492601 1378471 2861000 3295000 4152020 3942420 2263421 3656910 TRUE FALSE FALSE 2338125.647 2540191.848 2070576.08 3209150.152 2502146.702 2888496.401 3113140.68 3044817.028 2459616.155 2741195.934 0.852958236 0.92667285 0.75535501 1.1707117 0.912793818 1.053735841 1.135687034 1.110762274 0.897278492 1 21.38637402 -5.256131142 24.97982664 1.043995269 0.853163116 0.484795367 0.092012247 377.4920122 1776418.792 0.024715257 0.041225311 5.54E-06 5.256131142 -0.190832153 IS(ph)DS(ph)ESEDPPR ddPTM_HeLa_A485_30min_R1 2 ISDSESEDPPR 11 0 Q96ST2;Q96ST2-3;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 IS(1)DS(1)ESEDPPR;IS(1)DS(0.999)ES(0.001)EDPPR ; 178.15 2.97E-09 1448580000 1532420 1158320 1089270 2240200 1565050 1130740 1615640 1152620 1219850 2699100 TRUE FALSE FALSE 1873301.542 1293775.448 1492236.301 2362576.454 1409228.127 1189943.798 1270445.315 869938.1378 1464662.706 2026264.043 0.924510085 0.63850289 0.736447111 1.165976597 0.695480992 0.587259988 0.626989024 0.429331084 0.722839015 1 20.95039075 -5.983343156 24.9982538 0.635462066 0.852044862 0.184000304 0.186594536 361.5716226 542636.5856 0.057198766 0.064841998 1.04E-06 5.983343156 0.216582796 IS(ph)DS(ph)ESEDPPR ddPTM_HeLa_A486_30min_R1 1 ISDSESEDPPR 11 0 Q96ST2;Q96ST2-3;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 IS(1)DS(1)ESEDPPR 199.8 2.59E-14 1263100000 867920 992910 576710 355250 820240 1104700 1133000 1034700 851520 1212300 TRUE FALSE FALSE 807083.2899 914228.1955 800027.5568 827039.9533 717357.8508 968413.3458 849511.4163 799121.3973 925330.4392 908732.1893 0.888142073 1.006047993 0.880377702 0.910103068 0.789405129 1.065675187 0.934831435 0.879380533 1.018265282 1 19.79349566 -6.269343979 24.97977739 0.969291821 0.901042036 0.272503718 0.067872887 1054.101938 3331117.996 0.024078862 0.021626535 5.38E-07 6.269343979 -0.068249785 IS(ph)DS(ph)ESEDPPRHQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A485_30min_R1 1 ISDSESEDPPRHQASDSENEELPKPR 26 2 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 4 0 IS(1)DS(0.837)ES(0.164)EDPPRHQAS(0.998)DS(1)ENEELPKPR 82.765 0.0022916 528850000 415430 365370 237120 828660 516610 485310 820860 770810 350930 1116400 TRUE FALSE FALSE 507840.9703 408096.8432 324840.5554 873927.5975 465174.4945 510720.0812 645476.5552 581767.6389 421358.4321 838102.0258 0.605941705 0.48692979 0.387590705 1.042746075 0.555033254 0.60937698 0.770164652 0.694148947 0.502753148 1 19.67676635 -14 0.209682648 2.693019204 0.58248341 0.284428576 0.1734615 200.2602756 1.99601993 143.3867086 0.379169101 1.00E-14 14 -2.110535793 IS(ph)DS(ph)ESEDPPRHQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A486_30min_R1 1 ISDSESEDPPRHQASDSENEELPKPR 26 2 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 4 0 IS(0.998)DS(0.924)ES(0.079)EDPPRHQAS(1)DS(1)ENEELPKPR 88.814 0.0021839 436940000 319680 296680 148340 221330 293870 377810 560050 496500 232750 586940 TRUE FALSE FALSE 297272.0828 273169.9963 205781.2207 515267.4254 257010.0844 331199.6435 419919.5664 383457.7885 252924.9574 439966.4037 0.675669961 0.620888309 0.467720305 1.171151754 0.584158432 0.752783942 0.954435527 0.871561522 0.574873343 1 18.74703384 -2.088086164 0.149609903 0.958419788 5.16E-31 0.146990108 0.19668155 102.1439786 1.35050095 0.760163811 20.07866716 0.008164204 2.088086164 -0.958419788 IS(ph)DSESEDPPRHQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A485_30min_R1 2 ISDSESEDPPRHQASDSENEELPKPR 26 2 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 0 IS(0.735)DS(0.218)ES(0.247)EDPPRHQAS(0.8)DS(0.999)ENEELPKPR;IS(0.907)DS(0.051)ES(0.061)EDPPRHQAS(0.982)DS(0.999)ENEELPKPR ; 69.094 0.011698 1199540000 396580 362800 275765 702410 563740 502920 702680 725230 433680 976320 TRUE FALSE FALSE 484797.8528 405226.3041 377781.949 740780.8797 507612.0662 529252.1135 552546.6776 547366.2054 520715.5981 732941.3918 0.661441499 0.552876817 0.515432684 1.010695927 0.692568426 0.722093362 0.753875663 0.746807605 0.710446434 1 19.48333832 -14 0.055350478 2.012990363 0.238121222 0.371539004 0.121801378 542.3801115 2.201338543 78.85128922 15.03329098 1.00E-14 14 -1.77486914 IS(ph)DSESEDPPRHQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A486_30min_R1 1 ISDSESEDPPRHQASDSENEELPKPR 26 2 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 0 IS(0.876)DS(0.052)ES(0.072)EDPPRHQAS(1)DS(1)ENEELPKPR 89.266 0.0041471 445160000 330520 303750 141240 170310 305220 359260 477770 434980 255210 583790 TRUE FALSE FALSE 307352.2548 279679.7438 195931.9105 396490.287 266936.4615 314938.1539 358226.8927 335944.5495 277331.8083 437605.1842 0.70235058 0.639114329 0.447736722 0.906045681 0.609993828 0.71968561 0.818607516 0.767688688 0.63374891 1 18.7392703 -14 0.140513384 2.036307324 0.588286513 0.38965452 0.117272925 142.7697019 1.22565221 41.52301217 0.708017534 1.00E-14 14 -1.448020811 IS(ph)EDETER ddPTM_HeLa_A485_30min_R1 1 ISEDETER 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 IS(1)EDETER 187.55 5.51E-06 1162400000 1651900 1278600 1116400 2282600 1319700 994110 1444600 885490 1313300 2507900 TRUE FALSE FALSE 2019359.456 1428121.148 1529402.817 2407292.658 1188306.034 1046160.062 1135949.409 668322.1891 1576867.264 1882726.684 1.072571751 0.758538751 0.812333957 1.278620353 0.631162263 0.555662206 0.603353327 0.354975682 0.837544438 1 20.84439215 -5.93756821 24.91324166 0.622208583 0.95292978 0.339113565 0.210531912 68.43450507 27307.90942 0.063311042 0.071787971 1.15E-06 5.93756821 0.330721197 IS(ph)EDETER ddPTM_HeLa_A486_30min_R1 3 ISEDETER 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 IS(1)EDETER;IS(1)EDETER;IS(1)EDETER ;; 187.97 5.37E-06 3842260000 2537460 2780780 1434170 825319 1664540 2490350 2384890 2086850 2286970 3112090 TRUE FALSE FALSE 2359597.157 2560420.865 1989519.032 1921384.341 1455757.872 2183115.937 1788165.297 1611719.811 2485206.401 2332802.408 1.011486078 1.097572969 0.85284507 0.823637842 0.624038224 0.935834055 0.766530972 0.690894267 1.065330862 1 21.15363268 -4.820443803 5.867174822 0.824105921 1.05420153 0.287149272 0.129179626 0.195318905 13.35977999 0.032609518 0.0710726 1.51E-05 4.820443803 0.230095609 IS(ph)EDETERNGDDGTHDK ddPTM_HeLa_A485_30min_R1 2 ISEDETERNGDDGTHDK 17 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 IS(0.911)EDET(0.089)ERNGDDGTHDK;IS(0.969)EDET(0.031)ERNGDDGTHDK ; 163.91 3.41E-12 4003900000 584160 453790 362220 1063310 648170 547140 839590 655560 475170 1365060 TRUE FALSE FALSE 714104.3767 506856.7931 496220.2512 1121395.933 583635.9189 575787.4044 660204.7377 494782.8821 570532.2605 1024775.664 0.69683971 0.494602683 0.484223297 1.094284312 0.569525545 0.561866782 0.644243185 0.482820679 0.55673869 1 19.96687669 -10.42421565 3.331109736 1.004551597 0.620205916 0.305649156 0.171564288 208145245.5 287172358.4 9068337.509 0.045247514 3.77E-11 10.42421565 -0.384345681 IS(ph)EDETERNGDDGTHDK ddPTM_HeLa_A486_30min_R1 1 ISEDETERNGDDGTHDK 17 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 IS(0.683)EDET(0.317)ERNGDDGTHDK 227.7 8.92E-35 2394800000 1424500 1364800 630050 819280 1069800 1579200 1970100 1821700 1011000 2501700 TRUE FALSE FALSE 1324649.906 1256648.277 874022.2333 1907325.244 935615.7085 1384374.36 1477160.142 1406938.677 1098634.294 1875258.037 0.706382738 0.670120193 0.466081049 1.017100157 0.498926383 0.738231397 0.787710338 0.750264044 0.585857665 1 20.83865769 -11.10902408 2.447937052 1.566146092 0.693836926 0.279847642 0.14856261 25515993.77 7850891.377 80311010.36 0.037399645 7.78E-12 11.10902408 -0.872309166 IS(ph)EQFTAMFR ddPTM_HeLa_A486_30min_R1 1 ISEQFTAMFR 10 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;P04350 Q5JP53;P68371;A0A0B4J269;P04350 TUBB;TUBB4B;TUBB3;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain 1 0 IS(1)EQFTAMFR 132.79 6.42E-05 9551000 12502 12272 12174 8641.4 15483 13905 13286 14511 12895 15257 TRUE FALSE FALSE 11625.67436 11299.52203 16888.09883 20117.61591 13540.97777 12189.54248 9961.702275 11207.16207 14012.74898 11436.54789 1.016537024 0.988018599 1.476678014 1.75906367 1.184009186 1.065841073 0.871041014 0.979942739 1.225260377 1 13.48136402 -6.160654847 3.948863011 1.016715019 1.314343171 0.25726893 0.222146594 0.356346611 9.946348858 0.084415097 0.084168611 6.91E-07 6.160654847 0.297628152 IS(ph)FFLEK ddPTM_HeLa_A485_30min_R1 2 ISFFLEK 7 0 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 IS(1)FFLEK;IS(1)FFLEK ; 114.97 0.0025498 109525000 191500 128856 96171 230280 185403 148774 244550 180738 118374 265340 TRUE FALSE FALSE 234098.5143 143924.5883 131748.6549 242859.6133 166943.6263 156563.5766 192299.8947 136411.7221 142130.576 199195.6212 1.175219179 0.722528876 0.661403369 1.219201566 0.838088836 0.785979007 0.965382138 0.684812855 0.713522592 1 17.60382641 -5.974884801 24.99607939 0.817963801 0.923517524 0.076093047 0.185583554 700.6958946 697369.4019 0.058251602 0.066048892 1.06E-06 5.974884801 0.105553723 IS(ph)FFLEK ddPTM_HeLa_A486_30min_R1 2 ISFFLEK 7 0 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 IS(1)FFLEK;IS(1)FFLEK ; 138.66 0.0015455 143947000 217017 234310 123519 106866 192190 274080 340890 289200 183543 313590 TRUE FALSE FALSE 201805.229 215742.4223 171348.8648 248789.4487 168083.7381 240266.7962 255595.7164 223355.4732 199452.655 235065.0229 0.858508112 0.917798912 0.728942412 1.058385657 0.715052099 1.022129083 1.087340487 0.950185912 0.848499928 1 17.84270036 -6.315464432 24.99982777 0.985124577 0.863398764 0.257865624 0.106308135 465.2807243 215304.9519 0.036425016 0.032123864 4.84E-07 6.315464432 -0.121725812 IS(ph)FVEEDVHPK ddPTM_HeLa_A485_30min_R1 4 ISFVEEDVHPK 11 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK ;;; 220.4 5.49E-18 665210000 1001470 749750 570380 1378460 1022180 713420 1120360 1031080 711080 1769240 TRUE FALSE FALSE 1224243.546 837426.7405 781387.2975 1453761.779 920408.1701 750773.568 880985.9335 778206.0133 853787.2336 1328201.028 0.921730612 0.630496982 0.588304994 1.094534448 0.692973541 0.565255976 0.663292615 0.585909811 0.642814766 1 20.34104209 -4.24730773 22.30881959 0.705656905 0.921731291 0.107710112 0.17240668 1179.496752 1861854.992 0.043063193 0.754883724 5.66E-05 4.24730773 0.216074386 IS(ph)FVEEDVHPK ddPTM_HeLa_A486_30min_R1 4 ISFVEEDVHPK 11 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK ;;; 199.31 9.35E-15 680490000 1002660 931610 463300 396734 698140 1016850 1223170 1046990 718130 1343210 TRUE FALSE FALSE 932378.7117 857785.8307 642702.1676 923616.8018 610572.7713 891401.3856 917119.9286 808613.2326 780378.0866 1006861.473 0.926024817 0.851940265 0.638322336 0.917322617 0.606411892 0.88532674 0.910870018 0.803102765 0.775060033 1 19.94143378 IS(ph)GLIYEETR ddPTM_HeLa_A485_30min_R1 1 ISGLIYEETR 10 0 P62805 P62805 HIST1H4A Histone H4 1 0 IS(1)GLIYEETR 68.069 0.015236 10627000 2290.6 4184 3529.6 5034.9 4690.5 2100.4 5403.7 4474 4070.2 6709.1 TRUE FALSE FALSE 2800.136068 4673.282404 4835.345919 5309.943838 4223.497351 2210.373696 4249.155351 3376.744485 4887.051806 5036.644842 0.555952654 0.927856252 0.960033131 1.054262114 0.838553736 0.43885836 0.843648001 0.670435298 0.97029907 1 12.29824729 -4.249869297 23.55717727 0.841175889 0.555952267 0.208556691 0.173196106 1410.112854 2870927.939 0.045650089 0.66430746 5.63E-05 4.249869297 -0.285223623 IS(ph)GLIYEETR ddPTM_HeLa_A486_30min_R1 2 ISGLIYEETR 10 0 P62805 P62805 HIST1H4A Histone H4 1 0 IS(1)GLIYEETR;IS(1)GLIYEETR ; 122.51 0.00014949 18182100 12200.4 11969.5 8803.5 5612.5 12995.6 12839.3 15101.7 12661 11993.5 15579.6 TRUE FALSE FALSE 11345.21496 11020.99323 12212.45097 13066.18364 11365.57067 11255.31771 11323.09493 9778.366688 13033.10624 11678.36675 0.971472741 0.943710149 1.045732783 1.118836556 0.973215768 0.963774982 0.969578638 0.837306012 1.116004191 1 13.5115509 -5.965253008 24.99991913 0.966881321 1.020046994 0.063238535 0.076646639 454.4089631 326938.1935 0.023898031 0.027097708 1.08E-06 5.965253008 0.053165673 IS(ph)IPDVDLDLKGPK ddPTM_HeLa_A485_30min_R1 1 ISIPDVDLDLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)IPDVDLDLKGPK 123.14 1.60E-05 108020000 148770 105320 67657 205710 133070 137640 210590 192340 106410 311760 TRUE FALSE FALSE 181863.3732 117636.2578 92686.13974 216947.4164 119821.0836 144846.6176 165595.7261 145168.3134 127765.5109 234043.9695 0.777047892 0.502624605 0.396020201 0.926951533 0.511959713 0.618886348 0.707541094 0.620260858 0.54590388 1 17.83642007 -10.84149593 2.601569075 1.146729723 0.620759785 0.381118191 0.144089826 28267219.22 18408646.26 25831851.52 0.034563458 1.44E-11 10.84149593 -0.525969939 IS(ph)IPDVDLDLKGPK ddPTM_HeLa_A486_30min_R1 1 ISIPDVDLDLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)IPDVDLDLKGPK 66.977 0.0062845 101000000 284210 357230 279490 125690 324130 308110 370340 347780 312210 364000 TRUE FALSE FALSE 264288.3467 328921.7938 387716.013 292612.672 283474.593 270098.5208 277677.0149 268598.086 339272.6142 272852.0308 0.968614182 1.205495128 1.420975361 1.072422555 1.038931586 0.989908413 1.017683519 0.984409334 1.243430783 1 18.05775926 -5.496920229 24.93976442 1.042111169 1.207012272 0.235978847 0.12311805 976.2164793 937904.2728 0.035001149 0.051704849 3.18E-06 5.496920229 0.164901103 IS(ph)LPSDFQHK ddPTM_HeLa_A486_30min_R1 2 ISLPSDFQHK 10 0 Q5TCX8;Q5TCX8-2;G3V4P9;G3V347;A0A087WW79;J3KPI6;P80192;P80192-4 Q5TCX8 MLK4;MAP3K9 Mitogen-activated protein kinase kinase kinase MLK4;Mitogen-activated protein kinase kinase kinase 9 1 0 IS(0.999)LPS(0.001)DFQHK;IS(0.998)LPS(0.002)DFQHK ; 122.46 0.00011099 97667000 151697 160779 97201 42225 140800 159449 182573 169854 135148 168589 TRUE FALSE FALSE 141063.8237 148038.2865 134839.8303 98301.93393 123139.5511 139777.8035 136891.3043 131181.9521 146862.7375 126373.2171 1.116247785 1.171437192 1.066996896 0.777869997 0.974411778 1.106071419 1.083230351 1.038051853 1.162134991 1 16.94733121 -9.24346702 14.49813628 0.999999999 1.05021842 0.021225923 0.107767521 0 0 0.113693377 0.027574694 5.71E-10 9.24346702 0.05021842 IS(ph)MPDFDLHLK ddPTM_HeLa_A486_30min_R1 2 ISMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDFDLHLK;IS(1)MPDFDLHLK ; 179.46 1.56E-10 280630000 269070 331820 178983 165896 279670 413480 451840 428880 306300 401330 TRUE FALSE FALSE 250209.5825 305525.3747 248290.0109 386214.2719 244591.1808 362469.0416 338784.8529 331233.3864 332850.3306 300834.3558 0.831718777 1.015593362 0.825337951 1.283810391 0.813042713 1.204879146 1.126150808 1.101049066 1.106423931 1 18.19860981 -4.648878118 0.735656198 1.09783672 0.789670379 0.241312503 0.136200725 2.539377394 1.500393782 0.056320826 0.594020311 2.24E-05 4.648878118 -0.308166341 IS(ph)MPDLDLHLK ddPTM_HeLa_A485_30min_R1 2 ISMPDLDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDLDLHLK;IS(1)MPDLDLHLK ; 161.63 5.24E-08 92746000 244768 159536 123333 302940 249090 192617 285080 219700 179530 443820 TRUE FALSE FALSE 299215.7972 178192.3474 168959.009 319488.8451 224289.725 202702.1283 224170.3291 165818.2305 215560.0243 333183.8419 0.898050144 0.534816894 0.50710445 0.958896576 0.673171075 0.608379227 0.672812727 0.497677887 0.646970222 1 18.34595891 -10.06809324 5.156327003 1.000005321 0.660191072 0.317457251 0.146476515 8.95E-06 1.62E-06 0.141622588 0.034347985 8.55E-11 10.06809324 -0.339814249 IS(ph)MPDLDLHLK ddPTM_HeLa_A486_30min_R1 2 ISMPDLDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDLDLHLK;IS(1)MPDLDLHLK ; 168.89 2.98E-08 124125000 161430 166714 83977 88671 151480 214374 243320 252680 161988 246160 TRUE FALSE FALSE 150114.5906 153502.9755 116495.1434 206430.5692 132479.9659 187926.7155 182438.7624 195150.28 176029.2503 184519.9338 0.813541321 0.831904566 0.63134178 1.118744002 0.717971025 1.018462947 0.988721157 1.057610828 0.953985007 1 17.49341715 -5.874059715 0.804149827 1.014111673 0.779137849 0.325456374 0.122697575 0.764976308 1.089501529 0.067840997 0.100372281 1.34E-06 5.874059715 -0.234973823 IS(ph)MPDVDLHLK ddPTM_HeLa_A485_30min_R1 2 ISMPDVDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDVDLHLK;IS(1)MPDVDLHLK ; 186.13 9.67E-11 74821000 172135 85055 78397 255060 167433 122087 173200 107547 147508 410150 TRUE FALSE FALSE 210425.8369 95001.44237 107399.3127 268993.282 150762.7826 128479.2865 136194.4051 81170.92962 177111.5026 307907.1533 0.683406782 0.308539251 0.348804214 0.873618164 0.489637155 0.417266326 0.442322965 0.263621448 0.575210744 1 18.23213586 -8.02665172 23.53859477 1.000000008 0.475020906 0.451559384 0.171831125 1197.347491 1057487.799 0.168787488 0.043580733 9.40E-09 8.02665172 -0.524979102 IS(ph)MPDVDLHLK ddPTM_HeLa_A486_30min_R1 3 ISMPDVDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDVDLHLK;IS(1)MPDVDLHLK;IS(1)MPDVDLHLK ;; 191.06 5.26E-11 96786000 261778 317127 160928 156488 278398 408320 427020 409130 291890 376070 TRUE FALSE FALSE 243428.714 291996.7016 223243.6314 364311.9725 243478.7269 357945.6299 320175.0794 315980.0302 317191.2602 281899.6242 0.863529757 1.035817988 0.791925963 1.292346428 0.863707171 1.269762707 1.135776893 1.120895536 1.125192207 1 18.10482203 -5.251745763 24.99757134 1.11721605 0.910963919 0.376990147 0.12820989 726.3404213 1873058.874 0.032659713 0.055676122 5.60E-06 5.251745763 -0.206252131 IS(ph)MPDVDLHLKGPK ddPTM_HeLa_A485_30min_R1 1 ISMPDVDLHLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDVDLHLKGPK 209.67 1.95E-22 118640000 282910 208140 114490 298520 324430 335600 478940 472170 211870 501710 TRUE FALSE FALSE 345842.3535 232480.1624 156844.6153 314827.3917 292128.6101 353171.4971 376610.5564 356369.5672 254390.3656 376642.9303 0.918223404 0.617242868 0.416427876 0.835877608 0.775611558 0.937682533 0.999914046 0.94617352 0.675415215 1 18.52283792 -5.710595561 2.161225792 0.905604733 0.651638557 0.322118585 0.149723604 0.355053054 3.401988633 0.050736675 0.067646877 1.95E-06 5.710595561 -0.253966176 IS(ph)MSEVDLNVAAPK ddPTM_HeLa_A485_30min_R1 5 ISMSEVDLNVAAPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(0.998)MS(0.002)EVDLNVAAPK;IS(0.999)MS(0.001)EVDLNVAAPK;IS(1)MSEVDLNVAAPK;IS(0.695)MS(0.305)EVDLNVAAPK;IS(0.999)MS(0.001)EVDLNVAAPK ;;;; 359.65 1.62E-95 2352820000 2175084 1646382 1016316 2431960 2110210 1710047 2661940 2437480 1444383 3254160 TRUE FALSE FALSE 2658923.932 1838912.053 1392293.581 2564811.817 1900110.083 1799582.417 2093194.773 1839684.208 1734257.419 2442957.8 1.088403546 0.752739999 0.569921257 1.049879706 0.777790792 0.736640812 0.856828052 0.753056073 0.709900686 1 21.22019751 IS(ph)MSEVDLNVAAPK ddPTM_HeLa_A486_30min_R1 5 ISMSEVDLNVAAPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MSEVDLNVAAPK;IS(1)MSEVDLNVAAPK;IS(0.978)MS(0.022)EVDLNVAAPK;IS(0.977)MS(0.023)EVDLNVAAPK;IS(1)MSEVDLNVAAPK ;;;; 383.47 4.38E-125 2932355000 2642430 3040330 1648799 1455629 2744750 3230160 4063980 3703320 2167790 3076040 TRUE FALSE FALSE 2457209.303 2799403.178 2287258.129 3388777.875 2400477.861 2831655.701 3047129.22 2860154.879 2355695.783 2305779.562 1.065673988 1.214081009 0.991967388 1.469688573 1.041069971 1.228068696 1.32151801 1.240428585 1.021648305 1 21.13682316 -7.772174537 22.78728646 1.010823424 1.199462729 0.237593637 0.133006028 111.9561969 237622.0697 0.117443323 0.031838003 1.69E-08 7.772174537 0.188639305 IS(ph)PDLNIK ddPTM_HeLa_A485_30min_R1 1 ISPDLNIK 8 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 IS(1)PDLNIK 78.488 0.010327 76770000 321580 210660 180200 446130 332840 260010 440650 368850 239640 674930 TRUE FALSE FALSE 393114.3616 235294.8545 246863.4787 470500.9522 299701.2809 273623.7215 346501.5277 278388.9592 287733.5499 506682.3722 0.775859558 0.464383344 0.487215448 0.928591516 0.591497351 0.540030079 0.683863396 0.549434862 0.567877561 1 18.95072211 -9.968255488 4.367153041 1.000011271 0.617978687 0.417308878 0.13432188 43370928.11 113588945.8 8313.058193 0.033466126 1.08E-10 9.968255488 -0.382032585 IS(ph)PDLNIK ddPTM_HeLa_A486_30min_R1 2 ISPDLNIK 8 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 IS(1)PDLNIK;IS(1)PDLNIK ; 96.113 0.0029082 234610000 379140 367180 182875 222670 323250 457130 506910 437650 301180 592830 TRUE FALSE FALSE 352564.2439 338083.3196 253689.0976 518387.0131 282704.9708 400733.9484 380075.7565 338006.6488 327286.5249 444381.5093 0.793381895 0.760795201 0.570881309 1.166535966 0.636176269 0.901779079 0.855291565 0.760622667 0.736498972 1 18.76143926 -11.43360045 2.241755845 2.876001828 0.799940318 0.135415836 0.153055545 11911471.96 814227.2184 114128591.5 0.036342417 3.68E-12 11.43360045 -2.07606151 IS(ph)PIQKPQGLDPVEILQER ddPTM_HeLa_A485_30min_R1 2 ISPIQKPQGLDPVEILQER 19 1 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RRJ8 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 IS(1)PIQKPQGLDPVEILQER;IS(1)PIQKPQGLDPVEILQER ; 187.75 1.34E-18 612700000 366510 343700 246020 495830 444950 403870 582160 536370 325050 671680 TRUE FALSE FALSE 448038.8851 383892.7252 337033.0357 522915.9374 400649.2157 425016.0087 457776.7602 404824.4165 390284.5535 504242.5374 0.888538455 0.761325546 0.668394693 1.037032576 0.79455656 0.842880117 0.907850342 0.802836704 0.774001645 1 18.9437583 -11.45071498 2.309915673 2.860169623 0.830797837 0.225495265 0.094059589 3384589.887 625862.7562 33136632.08 0.023946104 3.54E-12 11.45071498 -2.029371786 IS(ph)PIQKPQGLDPVEILQER ddPTM_HeLa_A486_30min_R1 3 ISPIQKPQGLDPVEILQER 19 1 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RRJ8 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 IS(1)PIQKPQGLDPVEILQER;IS(1)PIQKPQGLDPVEILQER;IS(1)PIQKPQGLDPVEILQER ;; 178.53 2.69E-18 1882040000 744130 745410 412876 346807 732460 772060 964040 952770 622600 1016790 TRUE FALSE FALSE 691970.3297 686340.9969 572752.6444 807384.2227 640588.0369 676811.0869 722826.9954 735845.0698 676567.4693 762179.1658 0.907884079 0.900498239 0.751467201 1.059310276 0.840469099 0.887994736 0.948368872 0.965448943 0.887675103 1 19.53977065 -11.41868926 0.101061368 1.19028934 0.823459335 0.149470932 0.074777599 171.2884109 2.166959052 8.891431285 1.478645942 3.81E-12 11.41868926 -0.366830006 IS(ph)PPIKEEETKGDSVEK ddPTM_HeLa_A485_30min_R1 4 ISPPIKEEETKGDSVEK 17 2 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;A0A087WTC9 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK ;;; 159.98 3.98E-12 6430410000 3353110 1447780 794770 7953200 2596480 2802090 6078140 4266300 1805080 10568200 TRUE FALSE FALSE 4098997.751 1617085.277 1088788.496 8387663.177 2337965.334 2948803.1 4779495.735 3219983.236 2167342.999 7933742.233 0.516653759 0.203823773 0.137235174 1.057213977 0.294686324 0.371678713 0.602426395 0.405859321 0.273180415 1 22.91957009 -10.22572848 4.30793245 1.000240652 0.431211683 0.323041983 0.247875194 125156198.5 74271326.14 291326.3402 0.059810907 5.95E-11 10.22572848 -0.569028968 IS(ph)PPIKEEETKGDSVEK ddPTM_HeLa_A486_30min_R1 6 ISPPIKEEETKGDSVEK 17 2 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;A0A087WTC9 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(0.995)PPIKEEET(0.004)KGDS(0.001)VEK;IS(1)PPIKEEETKGDSVEK;IS(1)PPIKEEETKGDSVEK;IS(0.999)PPIKEEETKGDSVEK ;;;;; 140.11 7.23E-07 7989560000 3957600 3063540 823438 3718420 2367160 5657160 8496330 7131600 2552660 11052190 TRUE FALSE FALSE 3680192.677 2820773.933 1142295.246 8656669.679 2070248.72 4959237.117 6370458.369 5507890.362 2773926.624 8284649.686 0.444218261 0.340481981 0.137880935 1.044904734 0.249889711 0.59860553 0.768947223 0.66483081 0.334827268 1 22.98200926 -14 0.073472622 2.503953479 2.92E-14 0.262748478 0.253478286 401.749093 2.109148846 102.6015052 11.53655931 1.00E-14 14 -2.503953479 IS(ph)PTAGNQNGLLNK ddPTM_HeLa_A486_30min_R1 1 ISPTAGNQNGLLNK 14 0 A0A2R8Y568;A0A024RDL5;A0A2R8Y522;A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-5;Q8WXX7-2;Q8WXX7 A0A2R8Y568 AUTS2 Autism susceptibility gene 2 protein 1 0 IS(0.981)PT(0.019)AGNQNGLLNK 143.93 9.47E-08 112730000 57851 62685 41204 27972 65409 57301 77204 70999 51556 76416 TRUE FALSE FALSE 53795.94364 57717.61231 57159.29228 65120.22963 57204.79331 50231.78521 57886.74262 54834.0776 56024.91559 57280.93622 0.939159644 1.00762341 0.997876363 1.136856936 0.998670711 0.876937224 1.010576056 0.957283194 0.978072624 1 15.80576745 -6.006463571 24.99983341 0.961781913 1.024098523 0.176491217 0.056757239 492.918696 1906523.568 0.018229616 0.01995334 9.85E-07 6.006463571 0.06231661 IS(ph)RESSVDCLK ddPTM_HeLa_A486_30min_R1 2 ISRESSVDCLK 11 1 H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4;H3BMM1 H3BRD5 MYO9A Unconventional myosin-IXa 1 0 IS(0.993)RES(0.006)SVDCLK;IS(0.99)RES(0.01)SVDCLK ; 62.891 0.011753 1618210000 301633 630570 1428490 33338.6 1242260 198453 174575 334184 619740 59155 TRUE FALSE FALSE 280490.0843 580601.3367 1981639.584 77613.94564 1086444.167 173969.8866 130894.4885 258097.5984 673459.5622 44342.20297 6.325578469 13.09365115 44.68969631 1.750340318 24.5013575 3.923347848 2.951916679 5.820585833 15.18777862 1 15.43639283 -6.273650739 24.65255214 5.901461151 18.36753111 0.224694117 11.41189306 1008.0276 2035021.24 3.985788745 3.54150999 5.33E-07 6.273650739 12.46606996 IS(ph)S(ph)KSPGHMVILDQTK ddPTM_HeLa_A485_30min_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 2 0 IS(0.891)S(0.64)KS(0.469)PGHMVILDQTK 252.55 5.04E-50 242850000 217510 132760 84162 534010 239790 209430 429250 352020 171080 781130 TRUE FALSE FALSE 265894.3491 148285.1271 115297.0261 563181.6141 215915.6656 220395.431 337537.2308 265686.5431 205414.1868 586408.6666 0.45342841 0.252869945 0.196615488 0.960391014 0.368199991 0.375839314 0.575600686 0.453074039 0.350291867 1 19.1615469 -10.86483729 2.747344443 1.2358731 0.445338903 0.410452555 0.200273379 48982899.76 31185750.29 75370704.44 0.051209208 1.37E-11 10.86483729 -0.790534196 IS(ph)S(ph)SFSK ddPTM_HeLa_A485_30min_R1 1 ISSSFSK 7 0 Q9NQW1-4;Q9NQW1-5;Q9NQW1 Q9NQW1-4 SEC31B Protein transport protein Sec31B 2 0 IS(0.667)S(0.667)S(0.667)FSK 86.113 0.016041 38748000 82803 267990 332570 19447 228200 191980 108740 172120 227080 35001 TRUE FALSE FALSE 101222.2417 299329.0993 455601.4824 20509.34037 205479.6067 202031.7759 85506.81068 129907.3001 272652.8731 26275.89485 3.852285232 11.39177566 17.3391424 0.780538227 7.820080266 7.688863771 3.254192148 4.943972447 10.37653997 1 14.68145228 -5.273112524 24.99805482 5.429153144 10.914139 0.283705813 4.157775349 972.1093334 2081771.385 1.162415015 1.740050363 5.33E-06 5.273112524 5.484985857 IS(ph)S(ph)SFSK ddPTM_HeLa_A486_30min_R1 2 ISSSFSK 7 0 Q9NQW1-4;Q9NQW1-5;Q9NQW1 Q9NQW1-4 SEC31B Protein transport protein Sec31B 2 0 IS(0.667)S(0.667)S(0.667)FSK;IS(0.667)S(0.667)S(0.667)FSK ; 75.311 0.03472 214900000 360140 697710 1129850 37076 1051700 293120 214248 385000 611330 83881 TRUE FALSE FALSE 334896.0458 642420.9186 1567358.178 86314.80172 919785.9793 256957.8346 160640.8843 297343.9045 664320.5766 62876.65163 5.32623855 10.21716173 24.92750708 1.372763967 14.62841859 4.086697176 2.554857489 4.729003482 10.56545728 1 15.94023677 -6.275898178 24.20933971 4.693243497 11.44076124 0.225658146 6.20779717 844.7230947 1414371.774 2.168074096 1.921353281 5.30E-07 6.275898178 6.747517748 IS(ph)SIYAR ddPTM_HeLa_A485_30min_R1 1 ISSIYAR 7 0 Q14683;G8JLG1;V9GY57 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 1 0 IS(0.992)S(0.008)IYAR 111.95 0.0016639 0 89010 83927 86171 109760 135070 88520 101390 94867 89206 151800 TRUE FALSE FALSE 108809.9674 93741.53258 118049.2388 115755.9109 121621.9565 93154.77032 79727.19822 71600.7195 107108.826 113959.0537 0.954816348 0.822589602 1.035891708 1.015767569 1.067242598 0.817440715 0.699612674 0.628302159 0.939888692 1 16.79815602 -6.399585214 6.054795422 0.782488414 0.975054504 0.302054664 0.118496984 0.25957281 11.77581949 0.042385299 0.037174928 3.98E-07 6.399585214 0.19256609 IS(ph)SIYAR ddPTM_HeLa_A486_30min_R1 3 ISSIYAR 7 0 Q14683;G8JLG1;V9GY57 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 1 0 IS(0.992)S(0.008)IYAR;IS(0.989)S(0.011)IYAR;IS(0.939)S(0.061)IYAR ;; 136.21 0.0015844 708187000 665250 805900 490120 280264 751640 797370 851280 813170 667800 890750 TRUE FALSE FALSE 618619.4104 742037.549 679907.5899 652468.7558 657362.3024 698998.5965 638280.7401 628028.9424 725685.4417 667700.4022 0.926492493 1.111333087 1.018282433 0.977187903 0.984516859 1.046874607 0.955938828 0.940584939 1.0868429 1 19.34884138 -5.010575555 24.83026877 0.996123985 1.030386513 0.015136047 0.057757786 1431.842736 3361834.681 0.01475909 0.027927061 9.76E-06 5.010575555 0.034262528 IS(ph)SKSPGHMVILDQTK ddPTM_HeLa_A485_30min_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 IS(0.402)S(0.402)KS(0.196)PGHMVILDQTK 240.21 1.10E-41 1925800000 1895900 2137700 1527500 1777200 3601000 3335200 4860400 5851300 2222400 3442200 TRUE FALSE FALSE 2317636.414 2387685.419 2092585.815 1874283.936 3242471.796 3509825.915 3821935.834 4416259.501 2668415.295 2584122.889 0.896875464 0.923982923 0.80978572 0.725307587 1.254766873 1.358227169 1.479006997 1.708997478 1.032619349 1 21.30124325 -5.870691222 4.835252777 1.363589104 0.844387493 0.560134912 0.200394979 0.144985583 5.549042754 0.062218835 0.071422987 1.35E-06 5.870691222 -0.519201611 IS(ph)SPMHPSAGGQR ddPTM_HeLa_A485_30min_R1 2 ISSPMHPSAGGQR 13 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 IS(0.5)S(0.5)PMHPSAGGQR;IS(0.5)S(0.5)PMHPSAGGQR ; 135.72 7.96E-06 1587930000 606560 917430 979590 361650 1303560 837110 1116600 1094070 862900 764170 TRUE FALSE FALSE 741487.1794 1024715.458 1341981.105 381406.0238 1173772.989 880939.7852 878029.2882 825747.6171 1036076.115 573676.4825 1.292517999 1.786225319 2.339264631 0.664845144 2.046053874 1.535603798 1.530530386 1.43939597 1.806028566 1 19.12987785 -10.93620699 2.571843721 0.583521182 1.607744595 0.152557043 0.427357376 17920760.92 8796370.872 44725806.24 0.10110865 1.16E-11 10.93620699 1.024223413 IS(ph)SPMHPSAGGQR ddPTM_HeLa_A486_30min_R1 5 ISSPMHPSAGGQR 13 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 IS(0.5)S(0.5)PMHPSAGGQR;IS(0.5)S(0.5)PMHPSAGGQR;IS(0.5)S(0.5)PMHPSAGGQR;IS(0.5)S(0.5)PMHPSAGGQR;IS(0.5)S(0.5)PMHPSAGGQR ;;;; 166.04 4.95E-12 2923499000 1791950 1899070 1661570 194738 2362080 1384420 1696330 1637430 1784290 868466 TRUE FALSE FALSE 1666343.559 1748580.777 2304974.402 453359.9055 2065805.901 1213624.336 1271890.292 1264622.934 1938953.694 650996.4608 2.559681441 2.686006579 3.540686534 0.696409171 3.173298205 1.864256427 1.95375915 1.942595713 2.978439685 1 19.31229017 -10.31707572 0.165183969 6.91E-23 2.83021678 0.207494351 0.778177242 48.75098788 1.50916198 28.80787732 3.843326771 4.82E-11 10.31707572 2.83021678 IS(ph)TPERK ddPTM_HeLa_A485_30min_R1 6 ISTPERK 7 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK ;;;;; 107.47 0.0019143 5145150000 1872970 1521600 1017875 3021780 2064620 1752820 2936800 2595700 1521300 3757050 TRUE FALSE FALSE 2289605.715 1699537.884 1394429.32 3186852.19 1859059.183 1844594.945 2309328.689 1959100.505 1826610.956 2820486.578 0.811776852 0.602569038 0.494393177 1.129894471 0.659127116 0.653998838 0.818769607 0.694596642 0.647622637 1 21.42751264 -10.37503016 3.406880635 1.002052125 0.723282177 0.206141721 0.162698442 221174897.2 299302174.1 4450254.965 0.04045412 4.22E-11 10.37503016 -0.278769948 IS(ph)TPERK ddPTM_HeLa_A486_30min_R1 6 ISTPERK 7 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK;IS(0.608)T(0.392)PERK;IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK;IS(0.5)T(0.5)PERK ;;;;; 107.57 0.0019082 5691290000 3980580 3503470 1854040 2255130 3264840 4480430 5730530 4982640 3121890 6152590 TRUE FALSE FALSE 3701561.898 3225842.278 2571973.941 5250056.608 2855333.324 3927680.1 4296690.783 3848201.642 3392497.939 4611941.417 0.802603841 0.699454305 0.557677062 1.138361513 0.619117431 0.851632695 0.931644701 0.834399506 0.73558999 1 22.13694276 -13.99992561 0.030899519 2.071221392 0.079422443 0.143478002 0.154438281 2716.805879 6.301643035 321.1494137 126.4854319 1.00E-14 13.99992561 -1.991798949 IS(ph)YTPPESPVPSYASSTPLHVPVPR ddPTM_HeLa_A486_30min_R1 1 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 IS(0.417)Y(0.161)T(0.417)PPES(0.005)PVPSYASSTPLHVPVPR 63.085 0.013543 51548000 26577 33015 25816 5971 34928 26238 28308 32115 31643 27484 TRUE FALSE FALSE 24714.08954 30398.77116 35812.64658 13900.78976 30547.00455 23001.02233 21225.03899 24803.11557 34385.84072 20601.82751 1.199606663 1.475537602 1.738323775 0.674735761 1.482732759 1.116455437 1.030250301 1.203927931 1.669067499 1 14.3304847 -5.220193499 24.99988844 1.181869076 1.471594002 0.19487931 0.281253185 872.5384779 528860.3814 0.074507207 0.129048718 6.02E-06 5.220193499 0.289724926 ISAISEKPLS(ph)PHPIR ddPTM_HeLa_A486_30min_R1 1 ISAISEKPLSPHPIR 15 1 Q2KHM9;Q2KHM9-2;I3L341 Q2KHM9 KIAA0753 Uncharacterized protein KIAA0753 1 0 ISAISEKPLS(1)PHPIR 137.61 3.86E-06 281990000 297000 294750 166050 136680 281500 333200 380210 381830 278860 395370 TRUE FALSE FALSE 276181.8337 271392.9365 230349.007 318197.9474 246191.6451 292093.1717 285077.4365 294895.6443 303031.8093 296366.7786 0.931892012 0.915733328 0.77724301 1.073662672 0.830699197 0.985580007 0.961907532 0.995036103 1.022489129 1 18.17702421 -6.648707894 0.82454579 1.01368753 0.900795437 0.244046531 0.073806281 0.903468447 1.23806926 0.055081503 0.03609944 2.25E-07 6.648707894 -0.112892093 ISAPELLLHS(ph)PAR ddPTM_HeLa_A485_30min_R1 6 ISAPELLLHSPAR 13 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR ;;;;; 176.49 7.75E-13 657986000 620288 822625 821121 710770 1081168 823671 884082 954330 745992 854506 TRUE FALSE FALSE 758268.9256 918823.8379 1124887.828 749597.5653 973523.1177 866797.1399 695190.6584 720279.0712 895705.7518 641493.3802 1.182037023 1.432320062 1.753545496 1.168519565 1.51758872 1.351217591 1.083706675 1.122816062 1.396282143 1 19.29107485 -6.62111213 5.283580547 1.162550693 1.41908744 0.314966011 0.181677008 0.264441011 11.63835787 0.070041692 0.053702602 2.39E-07 6.62111213 0.256536746 ISAPELLLHS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 ISAPELLLHSPAR 13 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR ;;; 212.69 2.56E-22 609450000 775800 889600 720190 243838 913540 731570 814520 825130 705420 769050 TRUE FALSE FALSE 721420.4262 819104.8561 999066.8554 567667.1869 798955.2948 641316.3315 610718.4809 637265.9115 766566.3736 576474.8743 1.251434292 1.420885615 1.733062272 0.984721472 1.385932554 1.112479242 1.059401733 1.105453056 1.329748108 1 19.1368982 -5.273433624 24.99666033 1.149853132 1.463703232 0.456971758 0.163955964 672.7979474 1402146.213 0.045643351 0.068302002 5.33E-06 5.273433624 0.3138501 ISDYFEFAGGSAPGT(ph)SPGR ddPTM_HeLa_A486_30min_R1 3 ISDYFEFAGGSAPGTSPGR 19 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 ISDYFEFAGGSAPGT(0.5)S(0.5)PGR;ISDYFEFAGGSAPGT(0.5)S(0.5)PGR;ISDYFEFAGGSAPGT(0.5)S(0.5)PGR ;; 175.39 2.26E-12 429040000 716010 894130 723690 324170 931790 800880 891850 897110 755320 842180 TRUE FALSE FALSE 665821.3965 823275.8824 1003922.149 754684.1426 814916.2096 702075.5684 668699.697 692857.6368 820791.7458 631292.6463 1.054695315 1.304111314 1.590264285 1.195458472 1.290869162 1.112123787 1.059254691 1.097522109 1.300176314 1 19.26794942 -6.246269497 5.555669855 1.115967051 1.300761154 0.264144704 0.14369527 0.248326658 27.38806691 0.050431771 0.048315989 5.67E-07 6.246269497 0.184794102 ISDYFEFAGGSAPGTS(ph)PGR ddPTM_HeLa_A485_30min_R1 4 ISDYFEFAGGSAPGTSPGR 19 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 ISDYFEFAGGSAPGT(0.21)S(0.79)PGR;ISDYFEFAGGSAPGT(0.005)S(0.995)PGR;ISDYFEFAGGSAPGT(0.26)S(0.74)PGR;ISDYFEFAGGSAPGT(0.189)S(0.811)PGR ;;; 295.52 5.29E-79 537540000 700653 922380 886520 736366 1112460 818870 1005240 1054230 766574 876900 TRUE FALSE FALSE 856510.8426 1030244.317 1214480.639 776591.81 1001699.576 861744.767 790462.2619 795678.4395 920418.3704 658304.9681 1.301085187 1.564995507 1.844860206 1.179683957 1.521634538 1.309035794 1.200753906 1.208677555 1.398164096 1 19.32839656 -6.215484198 0.903908207 1.198661693 1.535580348 0.338434682 0.185588301 0.690937818 1.21728179 0.111961646 0.108514751 6.09E-07 6.215484198 0.336918655 ISDYFEYQGGNGS(ph)SPVR ddPTM_HeLa_A485_30min_R1 2 ISDYFEYQGGNGSSPVR 17 0 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;B3KRP1;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 ISDYFEYQGGNGS(0.5)S(0.5)PVR;ISDYFEYQGGNGS(0.5)S(0.5)PVR ; 195.27 1.52E-18 2043650000 921740 1295220 1153190 897280 1578450 1146250 1352550 1441130 1120530 1347280 TRUE FALSE FALSE 1126777.883 1446684.712 1579802.969 946296.1344 1421293.976 1206265.878 1063566.643 1087690.608 1345410.093 1011427.891 1.114046679 1.430338955 1.561953139 0.935604152 1.405235102 1.192636557 1.051549649 1.075401042 1.330208614 1 19.94796204 -5.961534052 0.908026265 1.122849803 1.334827177 0.148183301 0.183920081 1.107129269 1.99675738 0.099286351 0.126612517 1.09E-06 5.961534052 0.211977374 ISDYFEYQGGNGS(ph)SPVR ddPTM_HeLa_A486_30min_R1 2 ISDYFEYQGGNGSSPVR 17 0 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;B3KRP1;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 ISDYFEY(0.001)QGGNGS(0.802)S(0.197)PVR;ISDYFEY(0.001)QGGNGS(0.499)S(0.499)PVR ; 93.495 0.00075176 766626000 524526 610505 530267 205734 705959 569351 616408 626489 521593 607435 TRUE FALSE FALSE 487759.4361 562126.3604 735600.5834 478959.1492 617411.0394 499110.2624 462176.1987 483851.1309 566805.1012 455329.3223 1.071223425 1.234549002 1.615535278 1.051896124 1.355965911 1.096152253 1.015037196 1.062639956 1.244824512 1 18.79655084 -6.328024561 7.959984865 1.082628528 1.271486368 0.246186576 0.159200248 0.479368928 52.50126764 0.05616764 0.04952692 4.70E-07 6.328024561 0.18885784 ISDYFEYQGGNGSS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 ISDYFEYQGGNGSSPVR 17 0 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;B3KRP1;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 ISDYFEYQGGNGS(0.017)S(0.983)PVR;ISDYFEYQGGNGS(0.017)S(0.983)PVR ; 297.87 1.69E-68 589065000 293841 372357 349343 299048 464254 384337 440895 493644 354532 431518 TRUE FALSE FALSE 359204.9167 415900.9121 478579.5131 315384.235 418031.2417 404460.291 346694.1815 372577.035 425683.3204 323948.5041 1.108833386 1.283848843 1.477332067 0.973562869 1.290424979 1.248532671 1.070213868 1.150111917 1.314046261 1 18.30540497 -14 0.198923617 0.059611369 1.246947156 0.168654838 0.136982903 252.7158725 2.497597975 94.71652202 0.333213064 1.00E-14 14 1.187335787 ISDYFEYQGGNGSS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 ISDYFEYQGGNGSSPVR 17 0 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;B3KRP1;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 ISDYFEYQGGNGS(0.319)S(0.681)PVR;ISDYFEYQGGNGS(0.389)S(0.611)PVR;ISDYFEYQGGNGS(0.023)S(0.977)PVR ;; 255.22 2.12E-51 1563290000 1488640 1746910 1405740 498111 1815920 1523540 1709540 1668430 1315080 1687740 TRUE FALSE FALSE 1384294.023 1608478.489 1950080.175 1159627.581 1588150.381 1335581.125 1281795.01 1288564.911 1429072.193 1265118.919 1.094200713 1.271404977 1.541420452 0.916615477 1.255336836 1.055696113 1.013181442 1.018532639 1.129595149 1 20.27084157 -5.276395215 24.99934246 1.062900839 1.299248367 0.424547345 0.131451628 770.4855312 1287899.186 0.036894391 0.054969538 5.29E-06 5.276395215 0.236347528 ISEDET(ph)ERNGDDGTHDK ddPTM_HeLa_A486_30min_R1 1 ISEDETERNGDDGTHDK 17 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 IS(0.166)EDET(0.83)ERNGDDGT(0.004)HDK 151.2 5.21E-08 2452600000 1155400 1084400 399250 575910 779950 1267100 1487600 1400400 770450 1803900 TRUE FALSE FALSE 1074412.426 998468.1947 553850.2923 1340747.585 682121.3983 1110778.085 1115386.746 1081559.491 837233.2263 1352191.699 0.794571086 0.73840728 0.409594507 0.991536619 0.504456135 0.821464949 0.824873239 0.799856627 0.619167554 1 20.36686826 ISEGLPT(ph)PTKMT(ph)PR ddPTM_HeLa_A485_30min_R1 3 ISEGLPTPTKMTPR 14 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 2 0 ISEGLPT(1)PTKMT(1)PR;ISEGLPT(1)PT(0.001)KMT(1)PR;IS(0.1)EGLPT(0.9)PT(0.001)KMT(0.999)PR ;; 113.47 5.74E-05 470290000 869820 636090 501030 1296910 927060 692930 1129430 969300 637020 1548250 TRUE FALSE FALSE 1063308.458 710475.1923 686381.8466 1367756.909 834758.6513 729210.7433 888118.0539 731577.6552 764864.0709 1162299.768 0.914831515 0.611266742 0.590537713 1.176767772 0.718195662 0.627386121 0.76410413 0.629422525 0.658060934 1 20.14855077 -5.958342723 24.99998336 0.709777426 0.811060919 0.04522102 0.183346231 460.0258643 276075.5709 0.057224578 0.064886505 1.10E-06 5.958342723 0.101283494 ISEGLPT(ph)PTKMT(ph)PR ddPTM_HeLa_A486_30min_R1 1 ISEGLPTPTKMTPR 14 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 2 0 IS(0.114)EGLPT(0.885)PT(0.001)KMT(0.999)PR 101.38 0.0004719 215000000 283710 275930 147580 151060 279520 378450 427050 410660 257380 455230 TRUE FALSE FALSE 263823.3941 254064.3019 204726.9283 351675.3141 244459.9952 331760.6868 320197.5731 317161.6826 279689.9056 341237.445 0.773137292 0.744538167 0.599954464 1.030588288 0.716392643 0.972228258 0.938342429 0.92944572 0.819634275 1 18.38041644 -5.259070174 24.99999939 0.907345995 0.709742796 0.501893876 0.095326767 179.2667165 1891620.699 0.025316514 0.041307344 5.51E-06 5.259070174 -0.197603199 ISELEIINS(ph)SFENILQEK ddPTM_HeLa_A485_30min_R1 1 ISELEIINSSFENILQEK 18 0 P49454 P49454 CENPF Centromere protein F 1 0 IS(0.005)ELEIINS(0.497)S(0.497)FENILQEK 52.453 0.011274 0 5507.2 6534 3780.6 7276.7 7261.6 4467.8 7436.9 8633.9 4496 8519.3 TRUE FALSE FALSE 6732.25764 7298.094462 5179.201264 7674.207695 6538.609607 4701.727099 5847.945561 6516.422488 5398.30596 6395.595296 1.05263972 1.141112613 0.809807535 1.19992078 1.022361376 0.735150816 0.914370796 1.018892251 0.844066222 1 12.64286293 -6.026420479 24.86186418 0.901567513 1.048977776 0.264711382 0.119627472 955.0498931 898707.2157 0.038692577 0.038820931 9.41E-07 6.026420479 0.147410264 ISELEIINSS(ph)FENILQEK ddPTM_HeLa_A486_30min_R1 1 ISELEIINSSFENILQEK 18 0 P49454 P49454 CENPF Centromere protein F 1 0 ISELEIINS(0.178)S(0.822)FENILQEK 113.51 6.12E-05 6133900 29410 28560 14446 17690 26365 31137 33428 33594 21039 37173 TRUE FALSE FALSE 27348.51087 26296.80159 20039.87808 41183.214 23058.05586 27295.63352 25063.96083 25945.37955 22862.67746 27864.63884 0.981477313 0.943733803 0.719186715 1.477974082 0.827502412 0.979579663 0.899489887 0.931122047 0.820490715 1 14.76614783 ISELGS(ph)QLSDEAVEDGLFHEFKR ddPTM_HeLa_A485_30min_R1 1 ISELGSQLSDEAVEDGLFHEFKR 23 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 IS(0.032)ELGS(0.968)QLSDEAVEDGLFHEFKR 110.08 0.0001658 10227000 8529.9 12361 7600.3 9497.4 11782 11203 15698 20885 8298.9 12614 TRUE FALSE FALSE 10427.34683 13806.51142 10411.96724 10016.21891 10608.94271 11789.57176 12343.99406 15762.921 9964.413108 9469.561943 1.101143526 1.457988395 1.099519419 1.057727799 1.120320325 1.24499653 1.30354436 1.664588193 1.052257028 1 13.20908197 -6.53901922 4.005026755 1.308585754 1.173791101 0.016478421 0.198937319 0.575007377 21.03576489 0.076650567 0.060843112 2.89E-07 6.53901922 -0.134794653 ISELGSQLS(ph)DEAVEDGLFHEFKR ddPTM_HeLa_A485_30min_R1 1 ISELGSQLSDEAVEDGLFHEFKR 23 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 IS(0.001)ELGS(0.002)QLS(0.998)DEAVEDGLFHEFKR 59.282 0.019212 12973000 10951 15113 11886 13898 17417 15910 21510 23837 11708 18291 TRUE FALSE FALSE 13387.01217 16880.33388 16283.12602 14657.21255 15682.90233 16743.023 16914.21278 17990.93838 14057.68821 13731.39032 0.974920373 1.229324452 1.185832289 1.067423779 1.142120496 1.219324672 1.231791711 1.310205154 1.023762917 1 13.74519009 -6.015061267 23.38462458 1.181038645 1.124825237 0.00614401 0.108924133 981.3474616 1523675.187 0.034408624 0.035598948 9.66E-07 6.015061267 -0.056213408 ISEQFTAMFR ddPTM_HeLa_A485_30min_R1 5 ISEQFTAMFR 10 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;P04350 Q5JP53;P68371;A0A0B4J269;P04350 TUBB;TUBB4B;TUBB3;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain 0 0 ;;;; ;;;; 235.66 1.36E-19 272728000 237850 286292 296024 264058 387434 280179 344497 364800 293110 361469 FALSE FALSE TRUE 290758.9119 319771.359 405535.5962 278482.8199 348859.7106 294848.7392 270892.4017 275332.228 351934.4884 271361.4306 1.071482087 1.178396496 1.49444818 1.026243189 1.285590623 1.086553599 0.998271571 1.014632873 1.296921554 1 18.04985616 -6.349912973 7.319760622 1.074138486 1.214662063 0.174663824 0.143225708 0.492182809 35.66007113 0.050342007 0.04432897 4.47E-07 6.349912973 0.140523577 ISEQFTAMFR ddPTM_HeLa_A486_30min_R1 5 ISEQFTAMFR 10 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;P04350 Q5JP53;P68371;A0A0B4J269;P04350 TUBB;TUBB4B;TUBB3;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain 0 0 ;;;; ;;;; 270.19 5.20E-26 704265000 249776 281700 231887 114784.6 374101 286342 285036 305739 272180 324927 FALSE FALSE TRUE 232267.9922 259377.0661 321679.8565 267224.3497 327177.7642 251016.0354 213716.978 236128.9039 295772.7815 243563.1643 0.953625286 1.064927313 1.320724575 1.097145993 1.343297396 1.030599336 0.87746018 0.969477074 1.214357608 1 17.89393644 -6.494934228 24.78957403 1.004387202 1.159792831 0.210153575 0.132830006 974.2812267 864286.2642 0.047854924 0.042099342 3.20E-07 6.494934228 0.155405628 ISESVLRDS(ph)PPPHEDYEDEVFVR ddPTM_HeLa_A485_30min_R1 1 ISESVLRDSPPPHEDYEDEVFVR 23 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 IS(0.174)ES(0.174)VLRDS(0.652)PPPHEDYEDEVFVR 55.366 0.017845 119390000 349460 203360 151870 621410 312150 278440 495820 351780 258610 829190 TRUE FALSE FALSE 427196.1714 227141.183 208053.0328 655356.0548 281071.25 293018.6878 389884.0065 265505.4034 310510.6549 622488.1931 0.686271926 0.364892355 0.334228079 1.052800779 0.451528644 0.47072168 0.626331569 0.426522794 0.498821758 1 19.24768695 -10.38842438 2.963264425 1.007015008 0.543040723 0.321458373 0.19793526 27969516.09 33982304.44 1680394.603 0.050837174 4.09E-11 10.38842438 -0.463974285 ISESVLRDS(ph)PPPHEDYEDEVFVRDPHPK ddPTM_HeLa_A485_30min_R1 2 ISESVLRDSPPPHEDYEDEVFVRDPHPK 28 2 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 IS(0.16)ES(0.16)VLRDS(0.627)PPPHEDY(0.053)EDEVFVRDPHPK;IS(0.052)ES(0.044)VLRDS(0.904)PPPHEDYEDEVFVRDPHPK ; 131.96 1.66E-06 744100000 228668 236485 178195 276835 358510 280156 370880 442480 235644 390990 TRUE FALSE FALSE 279534.4077 264139.8636 244116.7458 291957.7951 322815.4856 294824.535 291638.4582 333961.0862 282935.5893 293523.3886 0.952341171 0.899893752 0.831677322 0.994666205 1.099794763 1.004432854 0.993578261 1.137766526 0.963928601 1 18.16311594 -5.456582845 5.993651461 1.037708654 0.896473993 0.551328484 0.0558285 0.158585335 10.91846796 0.015441569 0.022827683 3.49E-06 5.456582845 -0.141234661 ISESVLRDS(ph)PPPHEDYEDEVFVRDPHPK ddPTM_HeLa_A486_30min_R1 1 ISESVLRDSPPPHEDYEDEVFVRDPHPK 28 2 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 IS(0.041)ES(0.109)VLRDS(0.848)PPPHEDY(0.001)EDEVFVRDPHPK 51.628 0.013394 660340000 136530 133980 93543 53007 152590 143160 168980 162360 102600 131400 TRUE FALSE FALSE 126959.952 123362.9369 129765.3548 123402.9748 133450.7394 125498.3747 126699.4167 125394.1723 111493.4506 98496.58473 1.288978216 1.252459029 1.317460449 1.25286552 1.354876819 1.274139353 1.286333095 1.273081423 1.131952452 1 16.58778608 -7.954735695 2.210129035 1.000458581 1.290243695 0.914633378 0.028551705 0.070904051 0.779751635 0.026067124 0.007236641 1.11E-08 7.954735695 0.289785114 ISFKFDHLR ddPTM_HeLa_A485_30min_R1 2 ISFKFDHLR 9 1 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 0 ; ; 141.95 0.00014791 35675000 17322.5 24364.1 17872.3 9582.7 25583.6 25165.9 30061.1 41390 16100.6 15192.3 FALSE FALSE TRUE 21175.83036 27213.26956 24484.0075 10106.17864 23036.40695 26483.54761 23638.30041 31239.0376 19331.84274 11405.1392 1.856691969 2.386053258 2.146752184 0.886107434 2.019826899 2.322071405 2.07260078 2.739031681 1.695011555 1 13.47739643 -5.982899802 24.99879193 2.091093498 1.82909738 0 0.558746679 905.7505274 1324110.493 0.173003672 0.196127978 1.04E-06 5.982899802 -0.261996119 ISFKFDHLR ddPTM_HeLa_A486_30min_R1 1 ISFKFDHLR 9 1 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 0 150.61 6.09E-05 5302200 21737 19750 16534 6254.7 27747 18114 22563 23294 15114 24293 FALSE FALSE TRUE 20213.34855 18184.93807 22936.4076 14561.2577 24266.71253 15879.27885 16917.49875 17990.4647 16424.09369 18209.87468 1.110021288 0.9986306 1.259558783 0.79963525 1.332612824 0.872014724 0.92902884 0.987951044 0.901933373 1 14.15243337 ISFPAIQAAPSFSNSFPQIFR ddPTM_HeLa_A485_30min_R1 2 ISFPAIQAAPSFSNSFPQIFR 21 0 P23381;P23381-2;H0YJP3 P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS" 0 0 ; ; 102.52 2.48E-05 9283200 4590.4 5655.4 6954.6 4693.7 7373.8 5216.9 6653 6636.6 4864.3 6881.5 FALSE FALSE TRUE 5611.518643 6316.749835 9527.395945 4950.104946 6639.638581 5490.048817 5231.5322 5008.963444 5840.520392 5166.068695 1.086226099 1.222738258 1.844225563 0.958195726 1.285240087 1.062713088 1.012671822 0.969589013 1.130554148 1 12.33485111 -5.88661403 1.445475147 1.03218152 1.33916447 0.242501411 0.218067545 0.574177437 2.49180101 0.086853511 0.107275854 1.30E-06 5.88661403 0.30698295 ISFPAIQAAPSFSNSFPQIFR ddPTM_HeLa_A486_30min_R1 2 ISFPAIQAAPSFSNSFPQIFR 21 0 P23381;P23381-2;H0YJP3 P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS" 0 0 ; ; 151.56 5.27E-12 12453000 6117.5 8179.3 7952.3 1983 10288.9 9367.7 9075.5 9513.2 8507.9 10046 FALSE FALSE TRUE 5688.694841 7531.14248 11031.64353 4616.524215 8998.370222 8212.008418 6804.713909 7347.252032 9245.371622 7530.416212 0.755429007 1.000096445 1.464944728 0.61305034 1.194936637 1.09051189 0.903630519 0.975676752 1.227737135 1 12.87851389 -4.292227049 4.94966117 1.053282074 0.746368877 0.15323669 0.211554571 0.288402843 18.72008568 0.050702518 0.270655246 5.10E-05 4.292227049 -0.306913198 ISFPGSSES(ph)PLSSK ddPTM_HeLa_A485_30min_R1 3 ISFPGSSESPLSSK 14 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ISFPGS(0.007)S(0.036)ES(0.955)PLS(0.001)SK;ISFPGS(0.002)S(0.037)ES(0.961)PLSSK;ISFPGS(0.003)S(0.095)ES(0.902)PLSSK ;; 211.45 2.27E-22 417370000 405504 386623 306315 512182 555355 497217 596959 580146 379202 662400 TRUE FALSE FALSE 495706.9658 431835.1967 419633.6653 540161.2057 500061.9062 523250.5133 469413.8329 437864.2839 455304.3632 497275.8706 0.996845001 0.86840167 0.843864925 1.086240531 1.005602596 1.052233869 0.943970662 0.880525901 0.915597137 1 18.9236869 -5.236416567 24.93384428 0.980618568 0.899573658 0.225177205 0.068125525 1254.321312 1249859.682 0.020090027 0.034778107 5.80E-06 5.236416567 -0.081044911 ISFPGSSES(ph)PLSSK ddPTM_HeLa_A486_30min_R1 2 ISFPGSSESPLSSK 14 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ISFPGS(0.005)S(0.022)ES(0.972)PLS(0.001)SK;ISFPGS(0.001)S(0.032)ES(0.967)PLSSK ; 177.39 4.90E-13 326420000 483560 486560 307090 155936 480580 532350 577060 541100 404160 567340 TRUE FALSE FALSE 449664.9411 448003.2136 426003.4722 363026.8886 420301.1752 466674.0695 432673.4845 417903.3421 439192.9142 425274.3712 1.057352551 1.053445126 1.001714425 0.853629828 0.988305912 1.097348209 1.017398446 0.982667592 1.032728384 1 18.69803439 ISGWTQALPDMVVSHLFGK ddPTM_HeLa_A485_30min_R1 4 ISGWTQALPDMVVSHLFGK 19 0 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 0 ;;; ;;; 176.46 5.19E-18 41814300 59794 55713 47576.9 58089 65727 60419 79672 78971 42625.4 81560 FALSE FALSE TRUE 73094.96901 62228.15071 65177.57515 61262.25498 59182.9891 63582.44541 62649.42634 59603.23843 51179.9268 61228.593 1.193804486 1.016325015 1.064495719 1.000549775 0.966590709 1.03844368 1.023205389 0.973454321 0.835882784 1 15.90191791 -1 0.492880881 0.967697377 7.083734988 0.565441461 0.055736283 83.33923985 0.905007864 0.031852587 525.7095666 0.1 1 6.116037611 ISGWTQALPDMVVSHLFGK ddPTM_HeLa_A486_30min_R1 3 ISGWTQALPDMVVSHLFGK 19 0 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 0 ;; ;; 203.77 5.29E-23 27413300 34010.3 44236.6 31454.9 13243.6 42014.5 46697.1 51403.2 46715.9 40244.5 49432.9 FALSE FALSE TRUE 31626.3536 40731.13071 43635.07967 30831.77009 36744.64964 40936.08658 38541.57567 36079.70937 43732.92566 37054.58009 0.853507273 1.09921987 1.177589371 0.832063675 0.99163584 1.104751059 1.040129873 0.973690952 1.180229962 1 15.17736426 -6.229466999 23.69823668 1.056889165 0.998384485 0.088588045 0.109051657 1150.249083 852574.8826 0.03656027 0.036556011 5.90E-07 6.229466999 -0.05850468 ISHEGS(ph)PVKPVAIR ddPTM_HeLa_A485_30min_R1 1 ISHEGSPVKPVAIR 14 1 Q96II8-3;Q96II8;Q96II8-2 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 ISHEGS(1)PVKPVAIR 150.91 3.17E-08 515360000 606000 537270 468840 779370 790000 528580 770610 776220 571620 1150400 TRUE FALSE FALSE 740802.6093 600099.0529 642283.4261 821945.0096 711344.8261 556255.6315 605962.8782 585850.8279 686338.8908 863626.4515 0.857781287 0.69485951 0.743705134 0.951736724 0.823671884 0.64409286 0.70164928 0.678361376 0.79471731 1 19.72004791 -8.034362533 22.46426446 1.000000003 0.760011506 0.391153728 0.088538601 1489.435244 973707.8086 0.09182362 0.023708757 9.24E-09 8.034362533 -0.239988497 ISHEGS(ph)PVKPVAIR ddPTM_HeLa_A486_30min_R1 3 ISHEGSPVKPVAIR 14 1 Q96II8-3;Q96II8;Q96II8-2 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 IS(0.001)HEGS(0.999)PVKPVAIR;ISHEGS(1)PVKPVAIR;ISHEGS(1)PVKPVAIR ;; 163.56 4.17E-12 1334940000 1860460 1936660 1107470 719930 1929700 2064800 2274220 2273000 1628340 2276110 TRUE FALSE FALSE 1730051.361 1783192.008 1536312.043 1676033.423 1687659.032 1810065.969 1705186.102 1755487.519 1769485.822 1706157.241 1.014004641 1.045151036 0.900451615 0.982344055 0.98915797 1.060902199 0.999430803 1.02891309 1.03711767 1 20.70231918 -6.0768954 10.9387421 1.025460206 0.983932273 0.209906875 0.037885844 1.180681254 164.6731403 0.012883596 0.012889705 8.38E-07 6.0768954 -0.041527933 ISHSLYSGIEGLDES(ph)PSR ddPTM_HeLa_A485_30min_R1 4 ISHSLYSGIEGLDESPSR 18 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 ISHSLYSGIEGLDES(1)PSR;ISHSLYSGIEGLDES(1)PSR;ISHSLYSGIEGLDES(0.996)PS(0.004)R;ISHSLYSGIEGLDES(0.943)PS(0.057)R ;;; 333.33 1.00E-101 1196470000 411309 546839 558453 361467 728630 514476 607650 680170 512607 579332 TRUE FALSE FALSE 502803.2681 610787.0642 765048.0039 381213.0269 656085.0388 541413.1678 477820.6135 513357.241 615482.523 434915.1942 1.156094969 1.404381986 1.759073985 0.876522669 1.508535566 1.244870667 1.098652381 1.180361707 1.415178249 1 18.73037459 -5.946080442 0.91956101 1.191078787 1.380572154 0.082486636 0.237280228 1.566970809 2.89355319 0.125145174 0.161768664 1.13E-06 5.946080442 0.189493366 ISHSLYSGIEGLDES(ph)PSR ddPTM_HeLa_A486_30min_R1 4 ISHSLYSGIEGLDESPSR 18 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 ISHSLYSGIEGLDES(1)PSR;ISHSLYSGIEGLDES(1)PSR;ISHSLYSGIEGLDES(1)PSR;ISHSLYSGIEGLDES(0.998)PS(0.002)R ;;; 293.76 1.02E-78 1006970000 706650 791580 710080 119716 964310 682270 812880 837180 670870 581040 TRUE FALSE FALSE 657117.4841 728852.3179 985041.9926 278704.8981 843357.248 598098.4642 609488.8262 646572.3895 729021.5518 435543.8021 1.508728814 1.673430581 2.261637034 0.639900962 1.936331648 1.373222306 1.399374353 1.484517485 1.673819139 1 18.73245829 -12.17823518 0.189952569 1.75E-17 1.662826271 0.144115417 0.397574827 125.7463387 2.295793013 52.71473137 1.131117879 6.63E-13 12.17823518 1.662826271 ISICS(ph)SDKR ddPTM_HeLa_A485_30min_R1 4 ISICSSDKR 9 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IS(0.179)ICS(0.807)S(0.015)DKR;IS(0.002)ICS(0.955)S(0.043)DKR;ISICS(0.833)S(0.167)DKR;IS(0.004)ICS(0.823)S(0.174)DKR ;;; 120.57 0.0002553 1472600000 1583340 1405690 1104940 2152660 2016180 1603550 2348660 2205130 1394350 2664710 TRUE FALSE FALSE 1935548.521 1570073.218 1513703.286 2270254.365 1815442.04 1687509.398 1846849.604 1664318.41 1674183.255 2000446.837 0.96755809 0.784861256 0.756682586 1.134873631 0.907518263 0.843566231 0.923218538 0.831973327 0.836904648 1 20.93189086 ISICS(ph)SDKR ddPTM_HeLa_A486_30min_R1 3 ISICSSDKR 9 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IS(0.001)ICS(0.983)S(0.016)DKR;ISICS(0.972)S(0.027)DKR;ISICS(0.98)S(0.02)DKR ;; 119.39 0.00028869 1707830000 1310980 1353220 805900 625030 1335020 1505460 1891140 1791210 1074100 1863670 TRUE FALSE FALSE 1219087.072 1245985.919 1117966.063 1455101.427 1167569.343 1319731.652 1417956.77 1383390.585 1167203.853 1396994.902 0.872649621 0.891904414 0.800264956 1.041593943 0.835772086 0.944693248 1.015004971 0.990261728 0.83551046 1 20.41389532 -5.247540715 24.98948717 0.948926726 0.858636145 0.291544589 0.06904065 1100.422732 1978532.687 0.018468197 0.031783119 5.66E-06 5.247540715 -0.090290581 ISIEMHGTLEDQLSHLR ddPTM_HeLa_A485_30min_R1 4 ISIEMHGTLEDQLSHLR 17 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H0YJW3 P12814-2 ACTN1 Alpha-actinin-1 0 0 ;;; ;;; 195.92 1.34E-18 70372100 52068.5 67805 64582 42082.1 77566 56404 72665 80812 59329 70615 FALSE FALSE TRUE 63650.95819 75734.20492 88473.56928 44380.93857 69843.25669 59357.22622 57139.52913 60992.73029 71235.7861 53011.98007 1.200690072 1.428624338 1.668935383 0.837186962 1.31749949 1.11969457 1.077860685 1.150546163 1.343767692 1 15.69403081 -5.254382493 24.95760117 1.133552815 1.432337348 0.40613095 0.172316906 561.6450644 1986326.278 0.045968832 0.077516227 5.57E-06 5.254382493 0.298784533 ISIEMHGTLEDQLSHLR ddPTM_HeLa_A486_30min_R1 3 ISIEMHGTLEDQLSHLR 17 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H0YJW3 P12814-2 ACTN1 Alpha-actinin-1 0 0 ;; ;; 188.27 2.51E-14 35669900 47257 37451.9 36365.7 10498.8 46496 36523.1 41430 40911.4 35778 39194 FALSE FALSE TRUE 43944.52834 34484.07505 50447.47295 24441.73698 40664.03812 32017.25126 31063.7758 31596.76731 38879.26585 29379.56729 1.495751381 1.173743463 1.717093804 0.831929781 1.384092479 1.089779538 1.057325845 1.075467416 1.323343719 1 14.84252553 -5.26090097 24.99999824 1.120520073 1.433350924 0.413376544 0.191620849 50.86710863 2361869.22 0.050046012 0.080299258 5.48E-06 5.26090097 0.312830852 ISIEMNGTLEDQLSHLK ddPTM_HeLa_A485_30min_R1 1 ISIEMNGTLEDQLSHLK 17 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 138.97 1.13E-08 19048000 9572 11757 12824 10433 14122 9689.2 12495 12855 10655 13570 FALSE FALSE TRUE 11701.25838 13131.87888 17568.13125 11002.92837 12715.96409 10196.51153 9825.341175 9702.291094 12793.36077 10187.24874 1.148618109 1.289050578 1.724521675 1.080068687 1.248223581 1.000909254 0.964474455 0.952395622 1.255820987 1 13.31447686 -5.465923101 24.9981913 1.068706111 1.381684684 0.426505032 0.167745676 273.6488989 120105.8088 0.048149077 0.07141635 3.42E-06 5.465923101 0.312978572 ISIEMNGTLEDQLSHLK ddPTM_HeLa_A486_30min_R1 2 ISIEMNGTLEDQLSHLK 17 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 136.66 5.11E-07 26255000 21125.7 22261.2 20540 11443.9 30699 23835 28723 26266 22805.7 26814 FALSE FALSE TRUE 19644.89752 20497.14144 28493.63808 26641.97754 26848.44516 20894.48004 21536.2016 20285.80518 24782.51644 20099.59987 0.977377542 1.019778581 1.417622155 1.325497906 1.335770132 1.039547064 1.071474146 1.00926413 1.232985562 1 14.29487916 -6.283202068 24.51345905 1.071284425 1.221724322 0.20748437 0.140968561 1120.646068 1262289.745 0.054044793 0.04771016 5.21E-07 6.283202068 0.150439897 ISINQT(ph)PGK ddPTM_HeLa_A485_30min_R1 4 ISINQTPGK 9 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 ISINQT(1)PGK;ISINQT(1)PGK;ISINQT(1)PGK;ISINQT(1)PGK ;;; 205.97 2.78E-09 10217600000 14089400 12159900 9017800 20369300 18029500 13158900 21514900 20955800 12217500 26713700 TRUE FALSE FALSE 17223538.42 13581894.53 12353859.48 21482023.28 16234419.67 13847879.66 16918065.85 15816357.19 14669440.18 20054466.22 0.858838038 0.677250363 0.616015373 1.071183997 0.809516419 0.6905135 0.843605892 0.788670066 0.731479962 1 24.25742023 -10.61167936 3.055698632 1.013858464 0.786999307 0.221003442 0.119711363 895083775.6 981905428.9 99461060.98 0.030349521 2.45E-11 10.61167936 -0.226859157 ISINQT(ph)PGK ddPTM_HeLa_A486_30min_R1 5 ISINQTPGK 9 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 ISINQT(1)PGK;ISINQT(1)PGK;ISINQT(1)PGK;ISINQT(1)PGK;ISINQT(1)PGK ;;;; 205.12 3.02E-09 10723050000 15975330 16808300 8616750 9327440 15079940 18631290 24614100 22158200 11522940 22859000 TRUE FALSE FALSE 14855541.86 15476349.09 11953386.36 21714751.7 13188473.31 16332750.87 18455391.84 17113261.57 12521757.72 17134957.61 0.866972782 0.903203232 0.697602331 1.267277818 0.769682284 0.953183033 1.07706084 0.998733814 0.730772611 1 24.03043929 ISIPDVGLHLKGPK ddPTM_HeLa_A485_30min_R1 1 ISIPDVGLHLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 98.592 0.0019247 5534600 10697 21253 7573 6378.4 14984 24656 27062 49344 10945 9543 FALSE FALSE TRUE 13076.51075 23738.35347 10374.56784 6726.835841 13492.14035 25946.95003 21279.98262 37242.30663 13141.56111 7164.105726 1.825281654 3.313512444 1.448131593 0.938963787 1.883297213 3.621798872 2.970361332 5.198458545 1.834361693 1 12.80657091 -6.248595172 23.13205235 3.190235027 1.884897953 0.144413938 1.184615056 442.328191 796619.5271 0.383918519 0.38099494 5.64E-07 6.248595172 -1.305337074 ISKLEVTEIVKPS(ph)PK ddPTM_HeLa_A486_30min_R1 1 ISKLEVTEIVKPSPK 15 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 ISKLEVTEIVKPS(1)PK 67.43 0.0050349 266170000 182390 124000 61704 172180 211350 162230 324080 354740 87769 287000 TRUE FALSE FALSE 169605.4029 114173.7884 85597.44129 400843.7415 184840.5122 142215.712 242991.7562 273973.4459 95376.88759 215133.3319 0.78837343 0.530711756 0.397880889 1.863234013 0.859190487 0.661058474 1.129493761 1.273505335 0.443338495 1 17.71487154 ISKPGAVS(ph)TPVK ddPTM_HeLa_A486_30min_R1 1 ISKPGAVSTPVK 12 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ISKPGAVS(0.5)T(0.5)PVK 109.48 0.00021663 2674700000 5999800 6054900 2726000 2189200 4570200 6222900 7159300 6517700 4894500 7796600 TRUE FALSE FALSE 5579245.003 5575087.672 3781580.205 5096568.236 3996962.901 5455181.868 5367967.417 5033761.99 5318759.201 5844280.613 0.954650431 0.95393908 0.647056576 0.872060836 0.683910162 0.933422303 0.91849926 0.861314219 0.910079367 1 22.47859402 ISKPGAVS(ph)TPVKHADDHTPK ddPTM_HeLa_A485_30min_R1 2 ISKPGAVSTPVKHADDHTPK 20 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 IS(0.004)KPGAVS(0.498)T(0.498)PVKHADDHTPK;IS(0.001)KPGAVS(0.499)T(0.499)PVKHADDHTPK ; 139.79 2.74E-08 3947900000 1891370 1503630 749210 2101140 2500600 2706000 4380600 5416500 1600730 3949200 TRUE FALSE FALSE 2312098.731 1679466.449 1026373.956 2215919.958 2251631.484 2847681.976 3444649.024 4088094.882 1921981.828 2964737.12 0.779866355 0.56648073 0.346193917 0.747425444 0.759470871 0.96051753 1.161873341 1.378906364 0.648280691 1 21.49947276 -6.081297157 1.668699006 1.075298503 0.577515966 0.498110613 0.20137338 0.289867045 1.62007392 0.080589783 0.083893327 8.29E-07 6.081297157 -0.497782536 ISKPGAVST(ph)PVK ddPTM_HeLa_A485_30min_R1 1 ISKPGAVSTPVK 12 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ISKPGAVS(0.055)T(0.945)PVK 91.657 0.0023685 3360600000 5067900 3906700 3267900 5762500 5169100 4180200 5416100 4476500 4024200 7738400 TRUE FALSE FALSE 6195236.871 4363554.581 4476832.199 6077290.784 4654446.254 4399068.808 4258905.99 3378631.356 4831820.028 5809359.295 1.066423431 0.751124928 0.770624086 1.046120661 0.801197863 0.757238206 0.733111136 0.581584162 0.831730279 1 22.46994763 -5.988348208 24.92246614 0.754673464 0.891996693 0.15121233 0.136128369 371.2613738 794099.9459 0.04147053 0.046986188 1.03E-06 5.988348208 0.137323229 ISKPGAVST(ph)PVK ddPTM_HeLa_A486_30min_R1 1 ISKPGAVSTPVK 12 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 ISKPGAVS(0.082)T(0.918)PVK 136.01 1.70E-05 3001300000 4450100 4424800 1874800 1665900 3201300 4555800 4965300 4421900 3187200 5261300 TRUE FALSE FALSE 4138170.97 4074162.733 2600772.769 3878299.39 2799763.103 3993751.716 3722929.422 3415129.899 3463469.062 3943836.235 1.049275559 1.033045616 0.659452526 0.983382463 0.70990856 1.012656581 0.943986819 0.865941103 0.878197992 1 21.91116822 -9.228546522 20.30172988 1 0.900468098 0.049507649 0.125365426 0 0 0.11876394 0.028804486 5.91E-10 9.228546522 -0.099531902 ISLEQPPNGS(ph)DTPNPEKYQESPGIQMK ddPTM_HeLa_A485_30min_R1 1 ISLEQPPNGSDTPNPEKYQESPGIQMK 27 1 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 ISLEQPPNGS(0.835)DT(0.164)PNPEKYQESPGIQMK 86.081 0.0021364 301120000 51435 52748 35047 49583 90611 70552 99833 120230 46450 93612 TRUE FALSE FALSE 62876.5383 58916.41975 48012.34373 52291.59374 81589.45069 74245.99363 78502.86399 90743.40399 55772.08894 70276.2512 0.894705355 0.838354618 0.683194435 0.744086272 1.160981829 1.056487681 1.117061065 1.29123854 0.79361218 1 16.10074961 -5.75760248 24.99999348 1.08614657 0.785897892 0.523717342 0.130147242 73.73163941 480407.8023 0.038243391 0.047497246 1.75E-06 5.75760248 -0.300248678 ISLPLPNFSS(ph)LNLR ddPTM_HeLa_A485_30min_R1 2 ISLPLPNFSSLNLR 14 0 P08670;B0YJC4 P08670 VIM Vimentin 1 0 ISLPLPNFS(0.063)S(0.937)LNLR;ISLPLPNFS(0.011)S(0.989)LNLR ; 240.5 2.69E-35 1625100000 452120 532360 500970 398030 620440 486760 677350 679030 411460 521330 TRUE FALSE FALSE 552692.5342 594614.8711 686299.6501 419773.371 558666.8151 512246.0009 532628.6391 512496.8278 494036.2479 391372.0254 1.412192232 1.519308567 1.753573597 1.072568666 1.427457199 1.308846744 1.3609267 1.309487635 1.262318755 1 18.57818111 -11.22362475 0.06808024 9.55E-13 1.99725722 0.444236129 0.151223091 160.4034141 1.436001458 36.41809748 11.30997419 5.98E-12 11.22362475 1.99725722 ISLPLPNFSS(ph)LNLR ddPTM_HeLa_A486_30min_R1 2 ISLPLPNFSSLNLR 14 0 P08670;B0YJC4 P08670 VIM Vimentin 1 0 ISLPLPNFS(0.081)S(0.919)LNLR;ISLPLPNFS(0.018)S(0.982)LNLR ; 248.81 8.19E-36 1522830000 414930 467380 448570 171569 525110 410570 503240 536710 398810 443060 TRUE FALSE FALSE 385845.5497 430343.1066 622268.3171 399421.3026 459245.8073 359918.0478 377324.0293 414512.8493 433379.1719 332114.8922 1.161783343 1.295765763 1.873653762 1.202660019 1.382791974 1.083715474 1.136124992 1.24810076 1.304907374 1 18.34132289 -5.934560387 2.072393138 1.173002542 1.42082484 0.229411413 0.200415124 0.501765763 4.380707723 0.073142919 0.083826517 1.16E-06 5.934560387 0.247822297 ISLPLPNFSSLNLR ddPTM_HeLa_A485_30min_R1 3 ISLPLPNFSSLNLR 14 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;; ;; 295.37 4.69E-65 841432000 234432 303817 303849 218476 329947 295796 371060 387491 227891 305070 FALSE FALSE TRUE 286580.5896 339345.7553 416255.3893 230410.7907 297096.3182 311283.4212 291779.9997 292458.2247 273626.6334 229021.6634 1.251325247 1.481719023 1.817537185 1.006065484 1.297241116 1.359187671 1.274027947 1.276989348 1.194763104 1 17.80512455 -8.144763259 0.16561131 0.81340407 1.575062594 0.282666248 0.188483989 8.715512089 0.952062552 2.279725209 1.41422912 7.17E-09 8.144763259 0.761658524 ISLPLPNFSSLNLR ddPTM_HeLa_A486_30min_R1 2 ISLPLPNFSSLNLR 14 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ; ; 294.49 5.15E-65 937280000 291779 368460 319250 111787 411190 307120 404430 371470 319290 359850 FALSE FALSE TRUE 271326.7988 339261.8877 442872.1498 260245.7854 359614.716 269230.657 303237.3364 286894.3901 346966.3143 269741.2178 1.005878156 1.257730986 1.641840848 0.964797993 1.33318415 0.99810722 1.124178718 1.063591217 1.286293275 1 18.04121646 ISLSKS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 ISLSKSPTK 9 1 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 ISLS(0.077)KS(0.916)PT(0.007)K;ISLS(0.028)KS(0.971)PT(0.001)K ; 93.614 0.0014435 4687300000 5541200 3828900 2380300 9382800 6170100 5451400 9280600 8130300 4323300 12844600 TRUE FALSE FALSE 6773820.823 4276656.548 3260872.023 9895358.605 5555783.179 5736826.875 7297723.994 6136331.177 5190946.654 9642677.607 0.702483387 0.443513381 0.338170802 1.026204443 0.57616602 0.594941271 0.756815098 0.636372119 0.538330417 1 23.20100238 -13.99999998 0.293926681 3.968145107 0.603587089 0.283701373 0.177112545 348.8830749 3.272014206 636.7727325 0.189362432 1.00E-14 13.99999998 -3.364558018 ISLSKS(ph)PTK ddPTM_HeLa_A486_30min_R1 1 ISLSKSPTK 9 1 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 ISLS(0.016)KS(0.966)PT(0.018)K 75.695 0.0053889 3308300000 3409600 3304500 1537100 2129500 3353100 4867700 6222900 5604500 2760700 6240100 TRUE FALSE FALSE 3170604.647 3042639.385 2132306.285 4957583.619 2932522.932 4267172.665 4665864.601 4328477.695 2999999.699 4677538.344 0.677836164 0.650478769 0.455860782 1.059870225 0.62693723 0.91226888 0.997504298 0.925375139 0.64136293 1 22.15731805 -5.255989364 24.99939703 0.873001736 0.600300595 0.443638871 0.146434615 436.0075221 1999974.399 0.039384091 0.065772313 5.55E-06 5.255989364 -0.27270114 ISLSKS(ph)PTKTDPK ddPTM_HeLa_A486_30min_R1 1 ISLSKSPTKTDPK 13 2 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 IS(0.017)LS(0.073)KS(0.8)PT(0.08)KT(0.03)DPK 81.713 0.0019409 10209000000 3377300 2447700 928170 2764600 2323800 3772400 6397300 5808100 1876000 6277600 TRUE FALSE FALSE 3140568.71 2253735.338 1287582.281 6436128.515 2032327.335 3306999.643 4796627.876 4485722.42 2038613.19 4705648.1 0.667404074 0.4789426 0.273624855 1.367745394 0.431891058 0.702772407 1.019334165 0.953263467 0.433226868 1 22.16596201 -5.190602112 24.9999845 0.826348624 0.473885897 0.268665979 0.279215041 222.3427983 78468.44904 0.073839726 0.127894148 6.45E-06 5.190602112 -0.352462726 ISMPDFDLHLK ddPTM_HeLa_A485_30min_R1 1 ISMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 90.685 0.0081472 12570000 8120 7308.8 6865.6 11806 11078 7206.5 8451.9 8735.5 7597.5 16291 FALSE FALSE TRUE 9926.265986 8163.500582 9405.471141 12450.93189 9975.035423 7583.821197 6646.082519 6593.104928 9122.248562 12229.95351 0.811635627 0.667500541 0.769052076 1.018068619 0.815623331 0.62010221 0.543426638 0.539094848 0.745893969 1 13.5781313 -6.253877112 23.08292849 0.651754653 0.816681239 0.129792874 0.148550657 321.82612 982335.6562 0.049619811 0.048598705 5.57E-07 6.253877112 0.164926586 ISMPDFDLHLK ddPTM_HeLa_A486_30min_R1 2 ISMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 113.63 0.0014768 63816000 81246 106731 71271 42870.3 141202 113393 118357 118304 93852 109124 FALSE FALSE TRUE 75551.07495 98273.24685 98869.0399 99804.22495 123491.1285 99403.72456 88742.82675 91368.76176 101987.1669 81798.64012 0.923622628 1.201404409 1.208688063 1.220120833 1.509696595 1.215224659 1.084893668 1.116996097 1.246807609 1 16.31978924 -10.3973707 7.733761649 0.999995675 1.198217294 0.143923442 0.139681975 1.09E-05 8.51E-07 0.141586974 0.034339135 4.01E-11 10.3973707 0.19822162 ISMPDFDLHLKGPK ddPTM_HeLa_A485_30min_R1 1 ISMPDFDLHLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 127.76 7.76E-05 5935300 24622 30925 17967 20246 27921 33566 38330 50328 23908 32663 FALSE FALSE TRUE 30099.07896 34541.40974 24613.74097 21351.98771 25141.0872 35323.46386 30140.48237 37984.97909 28706.1163 24520.71522 1.227495964 1.408662408 1.003793762 0.870773447 1.025299914 1.440556017 1.229184471 1.549097518 1.170688377 1 14.58171344 -6.252394903 24.81872853 1.309178824 1.10507256 0.153488561 0.193562044 1018.629359 2795196.4 0.066845153 0.065919726 5.59E-07 6.252394903 -0.204106264 ISMPDIDLNLT(ph)GPK ddPTM_HeLa_A485_30min_R1 4 ISMPDIDLNLTGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMPDIDLNLT(1)GPK;ISMPDIDLNLT(1)GPK;ISMPDIDLNLT(1)GPK;ISMPDIDLNLT(1)GPK ;;; 308.04 6.71E-68 549631000 444751 320711 237016 601996 551018 363730 551342 581083 300980 816608 TRUE FALSE FALSE 543684.3256 358215.3616 324698.0815 634881.5171 496156.7132 382774.3404 433543.2777 438571.4831 361383.9252 613042.6542 0.886862149 0.584323716 0.529650065 1.035623725 0.809334734 0.624384515 0.707199205 0.715401253 0.589492302 1 19.22562793 -10.53212754 3.17520188 1.009143564 0.719198006 0.245482638 0.14712314 183724281.5 241700193.9 14716497.79 0.038808729 2.94E-11 10.53212754 -0.289945558 ISMPDIDLNLT(ph)GPK ddPTM_HeLa_A486_30min_R1 2 ISMPDIDLNLTGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMPDIDLNLT(1)GPK;ISMPDIDLNLT(1)GPK ; 259.68 5.29E-41 533210000 625300 574070 339530 408620 530160 610470 871300 749080 409540 969420 TRUE FALSE FALSE 581469.6991 528578.6025 471005.1089 951288.0105 463662.3893 535156.4182 653291.5243 578530.8363 445039.2569 726670.9221 0.800182973 0.727397487 0.648168372 1.309104275 0.638063772 0.736449474 0.899019769 0.79613869 0.612435758 1 19.47094265 -11.38185226 2.350998587 2.568090286 0.801624229 0.092706639 0.190500506 24079114.15 2059036.137 202255727.4 0.049529367 4.15E-12 11.38185226 -1.766466057 ISMPDLDLHLKS(ph)PK ddPTM_HeLa_A485_30min_R1 6 ISMPDLDLHLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK ;;;;; 240.59 1.59E-35 11785210000 5471120 3686590 2109237 8722610 5501460 4567940 8280350 7373640 3284490 11836450 TRUE FALSE FALSE 6688151.769 4117704.631 2889531.539 9199104.097 4953715.326 4807110.275 6511185.578 5565243.229 3943657.016 8885840.849 0.75267517 0.463400673 0.325183805 1.035254204 0.557484138 0.540985412 0.732759644 0.626304626 0.4438136 1 23.08307687 -10.61887139 4.629369317 1.006722007 0.609263421 0.280092452 0.188220772 0.013077116 0.001076617 0.182505152 0.043739951 2.41E-11 10.61887139 -0.397458586 ISMPDLDLHLKS(ph)PK ddPTM_HeLa_A486_30min_R1 6 ISMPDLDLHLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK;ISMPDLDLHLKS(1)PK ;;;;; 221.41 5.87E-28 18264180000 4608280 4070360 1676530 3228110 3450180 5199000 7565180 6502890 3158810 8470350 TRUE FALSE FALSE 4285263.369 3747809.85 2325727.315 7515203.22 3017426.253 4557600.24 5672291.948 5022323.904 3432618.194 6349319.227 0.674916982 0.590269557 0.36629554 1.183623464 0.475236186 0.717809276 0.893370099 0.791001952 0.540627754 1 22.59817048 -14 0.084117671 1.870477938 0.44648294 0.145611333 0.219593053 471.8143133 2.783772393 77.35169242 6.403288906 1.00E-14 14 -1.423994998 ISMPDLDLNLKGPK ddPTM_HeLa_A485_30min_R1 2 ISMPDLDLNLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 140.1 8.12E-06 58862000 66686 63450 45748 77234 85493 88526 113765 130057 65854 119665 FALSE FALSE TRUE 81520.07064 70869.92556 62672.08893 81453.09785 76981.01674 93161.08447 89458.17838 98160.31683 79070.29375 89834.71777 0.907445058 0.788892394 0.697637734 0.906699546 0.856918335 1.03702763 0.995808531 1.092676854 0.880175234 1 16.45498548 -5.993093775 1.831826961 1.007062446 0.806083305 0.551257558 0.075805975 0.246744317 1.674409432 0.028033861 0.031033409 1.02E-06 5.993093775 -0.200979141 ISMPDVDLHLK ddPTM_HeLa_A485_30min_R1 1 ISMPDVDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 127.42 0.00018744 106400000 86833 84140 84001 124590 131100 94800 113860 101890 100980 177450 FALSE FALSE TRUE 106148.7013 93979.44108 115076.4655 131396.0362 118047.2237 99763.58141 89532.88085 76901.31774 121245.7598 133214.9807 0.796822555 0.705472016 0.863840274 0.986345796 0.886140756 0.74889161 0.672093186 0.577272296 0.910151089 1 17.0233968 -6.277367234 21.93495071 0.748411824 0.848417893 0.030896497 0.129749868 377.6265158 520041.5894 0.046423365 0.041141928 5.28E-07 6.277367234 0.100006069 ISMPDVDLHLKGPK ddPTM_HeLa_A485_30min_R1 2 ISMPDVDLHLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 172.1 3.63E-08 76124000 134761 152455 91855 117459 175784 186268 255505 308100 128944 202901 FALSE FALSE TRUE 164738.1195 170283.2861 125835.9869 123875.4877 158282.3277 196020.7045 200914.2695 232537.9919 154821.8781 152321.5148 1.081515764 1.11792012 0.8261209 0.813250104 1.039133099 1.286887835 1.319014387 1.526626046 1.016415037 1 17.21676021 -6.163007059 4.124281729 1.268339073 0.958480048 0.355830412 0.169008411 0.232760277 6.990577782 0.058132082 0.057964134 6.87E-07 6.163007059 -0.309859026 ISMPDVDLHLKGPK ddPTM_HeLa_A486_30min_R1 2 ISMPDVDLHLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 184.21 9.21E-11 63222000 251129 215478 114847 88123 237386 223496 293140 287220 157798 316870 FALSE FALSE TRUE 233526.1539 198402.7385 159318.8341 205154.7975 207610.8343 195923.3359 219793.2715 221826.276 171476.0577 237523.6895 0.98316995 0.835296635 0.670749239 0.863723521 0.874063698 0.824858086 0.925353054 0.933912219 0.721932444 1 17.85771188 -6.257177772 1.534381734 0.885474158 0.830108488 0.043875935 0.098430157 1.391456376 6.535482095 0.044424152 0.040424528 5.53E-07 6.257177772 -0.05536567 ISMQDVDLSLGS(ph)PK ddPTM_HeLa_A485_30min_R1 8 ISMQDVDLSLGSPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK ;;;;;;; 320.92 4.17E-69 8589100000 4372330 3411477 2244714 6551974 4737679 3660458 5958610 5645270 2874644 8761130 TRUE FALSE FALSE 5344939.724 3810419.559 3075127.119 6909891.749 4265979.044 3852113.921 4685504.296 4260758.681 3451558.683 6577141.528 0.812653902 0.579342796 0.467547658 1.050591921 0.648606849 0.585682079 0.712392196 0.647813136 0.524780966 1 22.64902928 -10.69392607 2.847314813 1.044341335 0.67000621 0.285523631 0.156636885 56780936.32 52598342.23 18155664.54 0.040105046 2.02E-11 10.69392607 -0.374335125 ISMQDVDLSLGS(ph)PK ddPTM_HeLa_A486_30min_R1 9 ISMQDVDLSLGSPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLSLGS(1)PK ;;;;;;;; 243.61 1.92E-34 6123950000 3514844 3413283 1718115 2564298 3126942 3917685 5254798 4583721 2544937 6627740 TRUE FALSE FALSE 3268471.586 3142802.024 2383415.141 5969815.336 2734731.777 3434360.857 3939991.961 3540107.79 2765534.188 4968110.765 0.657890241 0.632594999 0.479742754 1.20162686 0.550457086 0.691281056 0.793056385 0.712566196 0.556657112 1 22.24426591 -11.15949424 2.419424812 1.723396844 0.702615987 0.186545137 0.189328009 27765534.89 7315658 109961176.2 0.048942299 6.93E-12 11.15949424 -1.020780858 ISMS(ph)EVDLNVAAPK ddPTM_HeLa_A486_30min_R1 1 ISMSEVDLNVAAPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(0.411)MS(0.589)EVDLNVAAPK 108.89 0.00291 72084000 155560 186080 127520 110730 188680 201170 239600 247730 147310 195700 TRUE FALSE FALSE 144656.0473 171334.3431 176899.1591 257785.036 165013.995 176351.6907 179649.5458 191327.2869 160078.9494 146695.4462 0.986097735 1.167959521 1.205894005 1.757280425 1.124874693 1.202161998 1.224642962 1.304248304 1.091233256 1 17.16246456 -7.931444805 4.242294209 1.001617666 1.252929869 0.159644633 0.189187951 0.351963341 11.85764528 0.187172902 0.04917023 1.17E-08 7.931444805 0.251312204 ISNIVHISNLVRPFTLGQLK ddPTM_HeLa_A485_30min_R1 4 ISNIVHISNLVRPFTLGQLK 20 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 0 ;;; ;;; 242.34 5.74E-38 182363000 212837 494563 488275 72222.3 524603 319037 329480 409421 276511 194641 FALSE FALSE TRUE 260181.8564 552397.8407 668908.2413 76167.62137 472371.6833 335741.284 259083.9064 309009.8578 332004.2214 146120.5808 1.780596922 3.780424617 4.577782525 0.521265526 3.232752571 2.297700174 1.773082922 2.114759304 2.272124978 1 17.15679987 -7.155377893 0.193530419 0.61457049 3.680373068 0.200316595 1.045703431 5.105962757 0.936213657 5.256346299 6.481009524 6.99E-08 7.155377893 3.065802578 ISNIVHISNLVRPFTLGQLK ddPTM_HeLa_A486_30min_R1 3 ISNIVHISNLVRPFTLGQLK 20 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 0 ;; ;; 237.09 1.04E-37 131240000 179545 255246 259658 19020.4 293933 161505 157036 189971 208287 107262 FALSE FALSE TRUE 166959.8227 235019.3774 360204.5315 44280.45244 257065.1823 141580.1552 117743.9318 146718.7503 226341.4849 80402.89704 2.076539886 2.923021259 4.479994437 0.550732052 3.197212934 1.760883754 1.464423997 1.824794326 2.815091162 1 16.29495986 -5.261879891 24.99999999 1.878613773 3.136168721 0.315381881 0.911775759 50.71085685 2878018.708 0.246535039 0.39269922 5.47E-06 5.261879891 1.257554948 ISNLIVLHLR ddPTM_HeLa_A485_30min_R1 2 ISNLIVLHLR 10 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ; ; 125.22 0.0010542 92431000 38868.5 45131.1 52712.6 47484 74925 35462.9 52138 48886.3 40423.2 68024 FALSE FALSE TRUE 47514.66373 50408.78956 72213.18429 50077.93068 67465.20392 37319.68261 40998.29037 36896.85827 48535.76546 51066.86869 0.930440126 0.987113384 1.414090704 0.98063445 1.321114955 0.730800293 0.802835408 0.722520476 0.950435511 1 15.64009998 -6.273716015 24.99872407 0.821570677 1.12677886 0.430642574 0.163270505 701.4546952 1428357.677 0.056263136 0.049982032 5.32E-07 6.273716015 0.305208183 ISNLIVLHLR ddPTM_HeLa_A486_30min_R1 2 ISNLIVLHLR 10 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ; ; 125.22 0.0010542 103562000 84355 81875 70386 30863.5 101155 75384 103650 95251 72679 92408 FALSE FALSE TRUE 78442.15011 75386.92682 97641.3442 71851.78775 88467.19667 66083.88853 77715.6737 73564.42661 78978.87424 69268.43532 1.132437159 1.088330153 1.409608052 1.0372948 1.277164646 0.954026004 1.121949317 1.062019465 1.140185625 1 16.07991047 -6.255859263 24.99910206 1.063656876 1.187207632 0.271856441 0.108689056 674.1223262 3020094.434 0.034960316 0.034048608 5.55E-07 6.255859263 0.123550755 ISNLS(ph)PEEEQGLWK ddPTM_HeLa_A485_30min_R1 5 ISNLSPEEEQGLWK 14 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 0 ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;IS(0.204)NLS(0.796)PEEEQGLWK ;;;; 373.79 1.55E-109 2817712000 1734183 1719018 1233708 2196685 2250851 1822638 2825856 2932538 1706789 3081682 TRUE FALSE FALSE 2119946.025 1920042.202 1690107.928 2316684.339 2026748.371 1918068.507 2222088.78 2213328.457 2049325.897 2313475.392 0.91634691 0.829938459 0.730549343 1.001387068 0.876062213 0.82908533 0.960498127 0.956711476 0.885821351 1 21.14163032 -7.211072398 0.29946749 1.005436134 0.828740233 0.246414929 0.070965916 2.275858729 0.698308752 0.130262989 0.144325228 6.15E-08 7.211072398 -0.176695901 ISNLS(ph)PEEEQGLWK ddPTM_HeLa_A486_30min_R1 7 ISNLSPEEEQGLWK 14 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 0 IS(0.004)NLS(0.996)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK;ISNLS(1)PEEEQGLWK ;;;;;; 391.74 2.25E-125 3150391000 1928223 1981992 1066548 808173 1798118 2001676 2559370 2338550 1518745 2382440 TRUE FALSE FALSE 1793064.525 1824931.736 1479543.949 1881467.587 1572581.274 1754729.567 1918988.556 1806113.215 1650391.039 1785861.517 1.004033352 1.021877519 0.828476304 1.053534985 0.88057291 0.982567545 1.074544996 1.011340016 0.924142787 1 20.76818878 -6.52186452 24.99981482 1.007038281 0.956625722 0.081411356 0.070427162 93.93684614 2315608.987 0.026097006 0.020473784 3.01E-07 6.52186452 -0.050412559 ISPMLS(ph)PFISSVVR ddPTM_HeLa_A485_30min_R1 2 ISPMLSPFISSVVR 14 0 C9J2G0;F8W733;Q9NXR7-4;Q9NXR7-3;Q9NXR7;Q9NXR7-1 C9J2G0 BRE BRCA1-A complex subunit BRE 1 0 IS(0.001)PMLS(0.999)PFISSVVR;ISPMLS(1)PFISSVVR ; 149.3 7.80E-07 22116000 32738 40550 35278 35545 45051 37815 47173 53904 34438 45810 TRUE FALSE FALSE 40020.45516 45291.96976 48328.80024 37486.73335 40565.56426 39794.93493 37094.10318 40683.95948 41349.39072 34390.41007 1.16370974 1.316994176 1.405298749 1.090034497 1.179560353 1.157152091 1.078617647 1.183003035 1.20235236 1 15.0697187 -5.275483436 24.874956 1.136270542 1.297500223 0.483364205 0.079241727 619.4418103 1097159.757 0.021991937 0.032802032 5.30E-06 5.275483436 0.161229681 ISPMLS(ph)PFISSVVR ddPTM_HeLa_A486_30min_R1 1 ISPMLSPFISSVVR 14 0 C9J2G0;F8W733;Q9NXR7-4;Q9NXR7-3;Q9NXR7;Q9NXR7-1 C9J2G0 BRE BRCA1-A complex subunit BRE 1 0 ISPMLS(1)PFISSVVR 138.28 5.74E-06 30635000 50221 55859 48685 24867 70843 46032 60580 59064 44279 54182 TRUE FALSE FALSE 46700.76724 51432.52941 67537.13583 57891.63271 61957.21036 40353.03986 45422.24325 45616.41656 48117.13937 40614.47453 1.149855262 1.266359592 1.662883408 1.425394108 1.525495801 0.993563017 1.118375746 1.123156635 1.184728842 1 15.30970636 -6.262706618 24.99670042 1.093812815 1.413588982 0.570475251 0.13950742 93.18614434 1838115.806 0.05068607 0.047175632 5.46E-07 6.262706618 0.319776167 ISQDADLKT(ph)PTKPK ddPTM_HeLa_A485_30min_R1 1 ISQDADLKTPTKPK 14 2 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 ISQDADLKT(0.947)PT(0.053)KPK 158.45 8.55E-09 1877700000 1920800 959020 419110 3353400 1462500 1420000 2918900 2565600 862770 3851900 TRUE FALSE FALSE 2348075.333 1071169.047 574156.2296 3536587.751 1316888.365 1494349.004 2295253.17 1936382.577 1035920.025 2891692.219 0.812007349 0.370429826 0.198553714 1.223016657 0.455404056 0.516773187 0.79374048 0.669636473 0.358240071 1 21.46348257 -10.60676393 3.225231005 1.021529063 0.600616466 0.156739601 0.278501661 264098122.3 357089042.7 49175240.65 0.068504918 2.47E-11 10.60676393 -0.420912597 ISQDADLKT(ph)PTKPK ddPTM_HeLa_A486_30min_R1 2 ISQDADLKTPTKPK 14 2 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 ISQDADLKT(0.981)PT(0.019)KPK;ISQDADLKT(0.915)PT(0.085)KPK ; 157.51 1.40E-08 4252400000 3713050 3041120 970880 2644850 2230680 4542700 6122530 5423910 2160870 7196230 TRUE FALSE FALSE 3452784.369 2800130.576 1346830.737 6157344.463 1950887.314 3982267.861 4590608.236 4189004.096 2348175.951 5394247.168 0.640086422 0.519095712 0.249679092 1.141465022 0.36166072 0.738243491 0.851019261 0.776568808 0.435311152 1 22.3629902 -13.99999998 0.086000027 2.050383029 0.348384807 0.158127116 0.247978111 425.5310426 2.557823447 85.14042624 6.678523977 1.00E-14 13.99999998 -1.701998222 ISQRDPS(ph)PESNK ddPTM_HeLa_A485_30min_R1 5 ISQRDPSPESNK 12 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 ISQRDPS(0.516)PES(0.483)NK;ISQRDPS(0.995)PES(0.005)NK;ISQRDPS(0.942)PES(0.058)NK;IS(0.007)QRDPS(0.993)PESNK;IS(0.003)QRDPS(0.991)PES(0.006)NK ;;;; 126.46 1.91E-05 1218490000 1497909 1272952 1151133 2322580 2084550 1586762 2406050 1884780 1511565 3102920 TRUE FALSE FALSE 1831113.689 1421812.663 1576984.999 2449456.664 1877004.883 1669842.405 1891977.762 1422534.75 1814922.231 2329419.149 0.786081668 0.610372188 0.676986364 1.051531093 0.80578237 0.716849265 0.812210101 0.610682174 0.779130811 1 21.15153883 -11.00573079 2.312036856 1.247601744 0.759802692 0.262512951 0.120125032 22569319.19 8435936.657 29724322.99 0.031562461 9.87E-12 11.00573079 -0.487799052 ISQRDPS(ph)PESNK ddPTM_HeLa_A486_30min_R1 5 ISQRDPSPESNK 12 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 IS(0.026)QRDPS(0.972)PES(0.002)NK;ISQRDPS(0.995)PES(0.005)NK;ISQRDPS(0.998)PES(0.002)NK;ISQRDPS(0.997)PES(0.003)NK;ISQRDPS(1)PESNK ;;;; 164.88 3.24E-09 786420000 1534460 1566700 879070 801630 1638680 1795350 2229510 2189190 1284350 2236500 TRUE FALSE FALSE 1426902.278 1442548.986 1219469.446 1866235.152 1433141.474 1573857.971 1671663.017 1690759.227 1395678.492 1676465.843 0.851137101 0.860470252 0.727404887 1.113196049 0.854858738 0.938795131 0.997135148 1.008525902 0.832512334 1 20.67699166 -5.244845728 24.99223421 0.959766044 0.817750707 0.412117349 0.082264417 840.6622316 1266146.558 0.021530984 0.03715421 5.69E-06 5.244845728 -0.142015337 ISQRDPS(ph)PESNKK ddPTM_HeLa_A485_30min_R1 2 ISQRDPSPESNKK 13 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 IS(0.001)QRDPS(0.952)PES(0.047)NKK;ISQRDPS(0.999)PES(0.001)NKK ; 95.873 0.00051132 662390000 1384430 1190420 621650 1719520 1209360 1497370 2213970 2202840 967520 2223350 TRUE FALSE FALSE 1692391.677 1329629.264 851624.204 1813453.024 1088951.872 1575769.978 1740937.223 1662590.036 1161692.389 1669109.763 1.013948702 0.796609842 0.510226603 1.08647919 0.652414776 0.944078103 1.043033395 0.99609389 0.695995204 1 20.6706474 -6.40848131 19.68374035 0.942385467 0.808427912 0.109455069 0.176069088 10.06776432 1703.382276 0.061045647 0.053836984 3.90E-07 6.40848131 -0.133957555 ISQRDPS(ph)PESNKK ddPTM_HeLa_A486_30min_R1 2 ISQRDPSPESNKK 13 2 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 IS(0.003)QRDPS(0.705)PES(0.292)NKK;ISQRDPS(0.716)PES(0.284)NKK ; 84.375 0.0020034 233990000 402430 324270 119394 182635 274390 382470 489700 439460 229990 650880 TRUE FALSE FALSE 374221.7352 298573.6642 165626.5543 425183.5099 239973.4476 335284.7401 367171.8805 339404.5513 249925.7184 487895.4115 0.767012205 0.611962435 0.339471433 0.871464457 0.491854283 0.687206176 0.752562684 0.695650222 0.512252652 1 18.89621239 -11.23036387 2.314325478 2.241031258 0.636425921 0.353910875 0.147299082 15350311.79 2647793.82 99788887.19 0.03551407 5.88E-12 11.23036387 -1.604605337 ISQRDPS(ph)PESNKKGESPSLESR ddPTM_HeLa_A486_30min_R1 1 ISQRDPSPESNKKGESPSLESR 22 3 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 ISQRDPS(1)PESNKKGESPSLESR 170.27 4.79E-14 828710000 514910 346960 181110 325710 538500 502540 826210 820370 261320 862480 TRUE FALSE FALSE 478817.468 319465.626 251240.6423 758269.3405 470956.3087 440541.7243 619483.5192 633589.6596 283971.428 646509.3942 0.740619506 0.494139186 0.388610969 1.172866701 0.728460117 0.681415813 0.958197243 0.980016169 0.439237899 1 19.30231181 -5.237649403 24.9974834 0.842861345 0.536424824 0.317691978 0.208112155 961.3015286 1010092.962 0.055301226 0.095718252 5.79E-06 5.237649403 -0.306436521 ISQRDPSPES(ph)NKKGESPSLESR ddPTM_HeLa_A486_30min_R1 1 ISQRDPSPESNKKGESPSLESR 22 3 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 ISQRDPS(0.38)PES(0.616)NKKGES(0.003)PS(0.001)LESR 128.55 1.22E-05 760270000 504330 321270 149780 300850 493000 472780 756380 828330 277050 761070 TRUE FALSE FALSE 468979.0714 295811.3952 207778.8272 700394.0041 431163.343 414453.2105 567125.7238 639737.3413 301064.9171 570493.1183 0.822059121 0.518518779 0.364209174 1.227699304 0.755773083 0.726482401 0.994097397 1.121376088 0.527727518 1 19.12184996 -5.247848433 24.99246457 0.902383193 0.563288016 0.33797537 0.21751569 913.3185735 1679503.831 0.058140092 0.099993096 5.65E-06 5.247848433 -0.339095177 ISQSALPPLPGS(ph)PAIQINGEWETHK ddPTM_HeLa_A485_30min_R1 1 ISQSALPPLPGSPAIQINGEWETHK 25 0 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 0 ISQSALPPLPGS(1)PAIQINGEWETHK 80.554 0.0045771 153010000 87123 80131 64383 98848 93169 78495 113170 87749 57092 110430 TRUE FALSE FALSE 106503.2108 89501.6234 88200.9509 104247.8159 83892.76722 82604.87682 88990.30499 66228.42016 68549.84072 82901.83331 1.284690658 1.0796097 1.063920391 1.257485049 1.0119531 0.996417974 1.073441942 0.798877631 0.826879672 1 16.33911639 -6.542794458 0.94846938 0.873664949 1.157774081 0.552845199 0.098793976 0.425567548 0.786860337 0.067581768 0.047126572 2.87E-07 6.542794458 0.284109132 ISRATEGLETYR ddPTM_HeLa_A485_30min_R1 1 ISRATEGLETYR 12 1 A0A5F9ZHA4;Q8IX94;P0CG41 A0A5F9ZHA4 CTAGE4;CTAGE8 cTAGE family member 4;cTAGE family member 8 0 0 69.01 0.016549 641340000 191330 240550 259110 224300 380400 255230 326080 338670 242300 382780 FALSE FALSE TRUE 233890.6984 268680.23 354965.5715 236552.941 342526.0403 268593.4481 256410.3442 255610.6515 290927.3875 287359.9905 0.813929239 0.934995263 1.235264418 0.823193725 1.191975402 0.934693266 0.892296606 0.889513711 1.012414383 1 18.13249968 ISRATEGLETYR ddPTM_HeLa_A486_30min_R1 1 ISRATEGLETYR 12 1 A0A5F9ZHA4;Q8IX94;P0CG41 A0A5F9ZHA4 CTAGE4;CTAGE8 cTAGE family member 4;cTAGE family member 8 0 0 78.653 0.0090331 855060000 231460 242390 191760 106270 285080 212520 310350 298220 226380 296390 FALSE FALSE TRUE 215235.8493 223182.1336 266014.6075 247401.9306 249322.6081 186301.4431 232697.1475 230321.8161 246002.8007 222172.0148 0.968780201 1.004546562 1.197336252 1.113560278 1.12220528 0.83854595 1.0473738 1.036682393 1.107262771 1 17.76131758 ISREPEPAAGPQAEESATVSAPAPMS(ph)PTR ddPTM_HeLa_A485_30min_R1 4 ISREPEPAAGPQAEESATVSAPAPMSPTR 29 1 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 0 ISREPEPAAGPQAEESATVSAPAPMS(0.966)PT(0.034)R;ISREPEPAAGPQAEESATVSAPAPMS(0.994)PT(0.006)R;ISREPEPAAGPQAEES(0.008)AT(0.025)VS(0.042)APAPMS(0.688)PT(0.237)R;ISREPEPAAGPQAEESATVSAPAPMS(0.822)PT(0.178)R ;;; 282.83 8.84E-78 3049280000 321257 507457 464058 338609 670662 505819 632411 749298 477460 478129 TRUE FALSE FALSE 392719.5113 566799.6819 635732.3653 357106.3523 603888.5364 532302.9007 497291.2235 565531.4906 573281.8425 358940.2396 1.094108344 1.579092059 1.771137073 0.994890828 1.682420832 1.482984748 1.385442947 1.575558904 1.597151222 1 18.45338414 -10.3293191 5.465907371 0.999898686 1.469408478 0.259127002 0.234367816 0.000277268 3.40E-05 0.217445118 0.052726894 4.68E-11 10.3293191 0.469509793 ISREPEPAAGPQAEESATVSAPAPMS(ph)PTR ddPTM_HeLa_A486_30min_R1 5 ISREPEPAAGPQAEESATVSAPAPMSPTR 29 1 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 0 ISREPEPAAGPQAEESATVSAPAPMS(0.995)PT(0.005)R;ISREPEPAAGPQAEESATVSAPAPMS(0.899)PT(0.101)R;ISREPEPAAGPQAEESATVSAPAPMS(0.999)PT(0.001)R;ISREPEPAAGPQAEESATVSAPAPMS(0.993)PT(0.007)R;ISREPEPAAGPQAEESATVSAPAPMS(0.941)PT(0.059)R ;;;; 306.01 2.68E-93 2736460000 986763 1008995 966476 381431 1366866 1007087 1197916 1282520 813051 1130923 TRUE FALSE FALSE 917596.0093 929038.5615 1340721.39 887990.6445 1195420.921 882842.8453 898184.7465 990518.1932 883526.9153 847732.5197 1.082412185 1.095910019 1.581538232 1.047489183 1.410139275 1.04141675 1.059514323 1.16843246 1.042223691 1 19.69324961 -6.299219308 24.99073868 1.072669245 1.243189191 0.249899614 0.156435112 874.5560153 578500.2628 0.054033769 0.047654133 5.02E-07 6.299219308 0.170519946 ISRPGDS(ph)DDSR ddPTM_HeLa_A485_30min_R1 1 ISRPGDSDDSR 11 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;B4DVF8;M0QYL7;M0R1W6 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 0 IS(0.01)RPGDS(0.99)DDSR 121.45 0.0015764 0 98900 151530 135730 126240 193700 151200 185010 177790 139240 187900 TRUE FALSE FALSE 120899.9638 169250.1154 185942.1752 133136.1715 174414.5479 159116.5982 145481.1021 134186.7237 167184.1908 141059.988 0.857081909 1.199844958 1.318178016 0.943826619 1.236456562 1.128006605 1.031342084 0.951274175 1.185199241 1 17.1059493 -6.76000588 24.17192328 1.037893379 1.124931381 0.057484714 0.138067606 68.81841058 1160472.042 0.053860031 0.039395833 1.74E-07 6.76000588 0.087038002 ISRPGDS(ph)DDSR ddPTM_HeLa_A486_30min_R1 2 ISRPGDSDDSR 11 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;B4DVF8;M0QYL7;M0R1W6 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 0 ISRPGDS(0.908)DDS(0.092)R;ISRPGDS(0.998)DDS(0.002)R ; 157.33 3.10E-06 931660000 1230800 1373730 1123670 532060 1630290 1355840 1506990 1522430 1198670 1429490 TRUE FALSE FALSE 1144527.276 1264870.632 1558785.117 1238662.569 1425803.826 1188570.246 1129925.163 1175805.923 1302571.681 1071536.4 1.068117962 1.180427125 1.454719707 1.155968728 1.330616325 1.109220598 1.054490695 1.097308429 1.21561123 1 20.03124943 -6.365843666 7.675904433 1.097736007 1.242052468 0.297759694 0.10949816 0.380426432 24.90592972 0.038987086 0.034324453 4.31E-07 6.365843666 0.144316461 ISRPGDSDDSR ddPTM_HeLa_A485_30min_R1 8 ISRPGDSDDSR 11 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;B4DVF8;M0QYL7;M0R1W6 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ;;;;;;; ;;;;;;; 129.34 6.00E-05 2365416000 1609875 2115869 2075937 1827754 2518899 2084625 2519475 2746811 1960376 2340367 FALSE FALSE TRUE 1967986.14 2363301.474 2843912.483 1927599.573 2268108.571 2193772.742 1981168.584 2073151.295 2353805.482 1756956.578 1.120110858 1.345110917 1.618658377 1.097124196 1.29093035 1.248620921 1.127613857 1.179967292 1.339706121 1 20.74464711 ISRPGDSDDSR ddPTM_HeLa_A486_30min_R1 5 ISRPGDSDDSR 11 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;B4DVF8;M0QYL7;M0R1W6 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ;;;; ;;;; 128.08 6.61E-05 2049686000 1639984 1878720 1542978 641231 2135480 1645911 1938230 1922950 1455600 1749210 FALSE FALSE TRUE 1525029.59 1729843.385 2140460.404 1492818.174 1867628.186 1442855.235 1453264.353 1485136.263 1581772.58 1311196.431 1.163082476 1.319286222 1.632448315 1.138516045 1.424369486 1.100411198 1.10834984 1.132657341 1.206358211 1 20.3224524 -6.272414495 24.53397042 1.117771042 1.340186567 0.40449544 0.136860082 603.4330845 1348921.127 0.047569644 0.042352049 5.34E-07 6.272414495 0.222415525 ISRPNGLLSEDVGMDIPFEEGVLSPSAADMRPEPPNSLDLNDT(ph)HPR ddPTM_HeLa_A485_30min_R1 1 ISRPNGLLSEDVGMDIPFEEGVLSPSAADMRPEPPNSLDLNDTHPR 46 2 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 ISRPNGLLSEDVGMDIPFEEGVLS(0.013)PS(0.069)AADMRPEPPNS(0.435)LDLNDT(0.483)HPR 59.67 0.0033322 76051000 16766 19708 17142 17426 21625 19167 24158 18484 13273 19079 TRUE FALSE FALSE 20495.53886 22012.67916 23483.53914 18377.93826 19471.93907 20170.55448 18996.44595 13950.77002 15936.76935 14322.95642 1.430957287 1.53688097 1.639573454 1.283110673 1.359491609 1.408267531 1.326293636 0.974014694 1.112673172 1 13.80604169 -7.000429304 0.804899974 0.977963158 1.490931253 0.757521714 0.102780412 0.318445594 0.386425104 0.093537774 0.047859224 9.99E-08 7.000429304 0.512968095 ISS(ph)KS(ph)PGHMVILDQTK ddPTM_HeLa_A485_30min_R1 3 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 2 0 IS(0.518)S(0.773)KS(0.709)PGHMVILDQTK;IS(0.108)S(0.898)KS(0.993)PGHMVILDQTK;IS(0.06)S(0.942)KS(0.998)PGHMVILDQTK ;; 159.14 4.57E-09 942850000 1019880 613000 364210 2319270 1050770 949320 1852620 1513320 718480 3219380 TRUE FALSE FALSE 1246748.787 684685.0176 498946.435 2445965.847 946151.6493 999024.9273 1456792.602 1142175.897 862672.3457 2416847.814 0.515857383 0.283296703 0.206445119 1.012047938 0.391481683 0.413358641 0.60276555 0.472589085 0.356941112 1 21.2046952 -10.53756325 3.074235869 1.019817035 0.474892187 0.362456095 0.209761808 166750746.5 192569460.3 27550050.18 0.056237431 2.90E-11 10.53756325 -0.544924848 ISS(ph)KS(ph)PGHMVILDQTK ddPTM_HeLa_A486_30min_R1 4 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 2 0 IS(0.499)S(0.589)KS(0.912)PGHMVILDQTK;IS(0.372)S(0.631)KS(0.996)PGHMVILDQTK;IS(0.092)S(0.914)KS(0.994)PGHMVILDQTK;IS(0.354)S(0.663)KS(0.983)PGHMVILDQTK ;;; 158.44 8.69E-09 1780640000 1615250 1400130 463950 1219450 1064410 1938240 2901510 2275200 1109750 3556820 TRUE FALSE FALSE 1502029.316 1289178.6 643603.865 2838941.228 930901.7726 1699119.655 2175521.509 1757186.627 1205944.024 2666169.121 0.563366106 0.483532192 0.241396489 1.064801631 0.34915331 0.637288776 0.81597281 0.659067954 0.452313401 1 21.34633687 -14 0.143035901 2.355610106 0.455440862 0.236654607 0.222523419 205.1386856 1.778996453 80.0242865 1.273219025 1.00E-14 14 -1.900169244 ISS(ph)LLEEQFQQGK ddPTM_HeLa_A485_30min_R1 2 ISSLLEEQFQQGK 13 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 1 0 IS(0.041)S(0.959)LLEEQFQQGK;IS(0.016)S(0.984)LLEEQFQQGK ; 238.02 7.28E-35 156379000 379390 350630 263970 536550 527290 417560 653240 622200 358250 745710 TRUE FALSE FALSE 463783.9966 391633.1284 361623.4877 565860.3679 474791.1562 439422.7959 513669.9375 469604.4744 430147.4889 559818.2208 0.828454629 0.699571957 0.645965912 1.010793052 0.848116654 0.78493836 0.917565593 0.838851715 0.768369933 1 19.09459892 -13.29573605 0.025287052 2.069737628 4.00E-06 0.246050999 0.097540134 2728.848621 5.832199796 333.8822312 168.8778448 5.06E-14 13.29573605 -2.069733627 ISS(ph)LLEEQFQQGK ddPTM_HeLa_A486_30min_R1 2 ISSLLEEQFQQGK 13 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 1 0 IS(0.025)S(0.975)LLEEQFQQGK;ISS(1)LLEEQFQQGK ; 283.82 1.35E-67 78945000 321890 339160 183739 162540 365030 399500 468040 452840 287442 437040 TRUE FALSE FALSE 299327.1732 312283.7264 254887.6615 378401.3343 319244.5336 350213.7518 350931.4416 349738.2174 312357.704 327602.3393 0.913690585 0.953240221 0.778039809 1.15506298 0.974487955 1.069020913 1.071211647 1.067569353 0.953466036 1 18.32158613 -5.261363269 25 1.04394777 0.88881521 0.536244858 0.068014809 5.234535962 1719111.213 0.018035341 0.028881844 5.48E-06 5.261363269 -0.15513256 ISS(ph)PMHPSAGGQR ddPTM_HeLa_A485_30min_R1 3 ISSPMHPSAGGQR 13 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 IS(0.039)S(0.927)PMHPS(0.034)AGGQR;IS(0.22)S(0.777)PMHPS(0.004)AGGQR;IS(0.426)S(0.574)PMHPSAGGQR ;; 126.07 2.13E-05 739589000 593830 920760 938230 383582 1302830 783150 991940 1077770 835210 744270 TRUE FALSE FALSE 725925.4348 1028434.872 1285320.32 404536.1134 1173115.671 824154.523 780003.9156 813445.2176 1002828.986 558737.1863 1.299225204 1.840641535 2.300402321 0.724018596 2.099584025 1.475030736 1.396012177 1.455863754 1.794813395 1 19.09181032 -11.73735455 0.276692726 1.67E-08 1.65498 0.146682828 0.422718194 103.7031525 3.071869052 62.79109703 0.503015197 1.83E-12 11.73735455 1.654979984 ISS(ph)PTETER ddPTM_HeLa_A486_30min_R1 1 ISSPTETER 9 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 1 0 IS(0.033)S(0.889)PT(0.077)ETER 146.48 9.31E-05 1458400000 1033200 1220900 862370 355790 1381500 1111700 1167900 1293500 1014900 1277200 TRUE FALSE FALSE 960778.0155 1124151.438 1196302.759 828297.1006 1208219.388 974549.7569 875679.0672 998998.2869 1102872.349 957380.8068 1.00354844 1.174194667 1.249557909 0.865169946 1.262005024 1.017933251 0.914661189 1.043470142 1.151968309 1 19.86873336 ISS(ph)TPPSGSR ddPTM_HeLa_A485_30min_R1 3 ISSTPPSGSR 10 0 Q3Y452 Q3Y452 TDRG1 Testis development-related protein 1 1 0 ISS(0.499)T(0.499)PPS(0.002)GSR;ISS(0.333)T(0.333)PPS(0.333)GS(0.002)R;IS(0.002)S(0.494)T(0.494)PPS(0.01)GSR ;; 123.96 0.00012306 7007200000 4410660 6639900 7115200 4438560 7545200 6363200 6563000 7337400 5937000 5896100 TRUE FALSE FALSE 5391796.1 7416378.546 9747408.568 4681027.294 6793973.395 6696367.313 5160761.435 5537891.145 7128501.443 4426310.78 1.21812416 1.675521425 2.202151872 1.057546008 1.534906547 1.512855207 1.165928398 1.251130212 1.610483718 1 22.07767332 -5.287754025 24.99897949 1.32764047 1.696291674 0.273769499 0.292324878 1017.408476 966538.4158 0.082173976 0.121924165 5.16E-06 5.287754025 0.368651204 ISS(ph)TPPSGSR ddPTM_HeLa_A486_30min_R1 6 ISSTPPSGSR 10 0 Q3Y452 Q3Y452 TDRG1 Testis development-related protein 1 1 0 IS(0.005)S(0.494)T(0.494)PPS(0.003)GS(0.004)R;ISS(0.495)T(0.495)PPS(0.009)GS(0.001)R;ISS(0.49)T(0.49)PPS(0.018)GS(0.001)R;ISS(0.466)T(0.466)PPS(0.067)GS(0.001)R;IS(0.001)S(0.494)T(0.494)PPS(0.008)GS(0.002)R;IS(0.001)S(0.495)T(0.495)PPS(0.007)GS(0.002)R ;;;;; 125.74 0.0001112 9070210000 6820790 8351290 7684760 2530200 9489880 6986840 7565710 8058820 6703870 7222390 TRUE FALSE FALSE 6342687.844 7689503.366 10660504.88 5890433.469 8299570.761 6124874.718 5672689.336 6224002.609 7284966.849 5413856.534 1.171565557 1.420337483 1.969114772 1.088029103 1.533023771 1.13133303 1.04780932 1.149643063 1.345615053 1 22.36822523 -6.271138894 23.8276397 1.138790823 1.445760746 0.28979534 0.235755328 489.7726042 1203161.071 0.082811112 0.074025484 5.36E-07 6.271138894 0.306969922 ISS(ph)VPNSLSK ddPTM_HeLa_A485_30min_R1 2 ISSVPNSLSK 10 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 ISS(0.994)VPNS(0.006)LSK;IS(0.053)S(0.842)VPNS(0.102)LS(0.002)K ; 117.21 0.00034547 180850000 909520 839130 592330 1087000 1064830 789190 1143890 1040720 725480 1322580 TRUE FALSE FALSE 1111839.586 937258.954 811457.5159 1146380.058 958811.7864 830510.7681 899488.5568 785481.7882 871077.1815 992885.1463 1.119806848 0.943975199 0.817272289 1.154594831 0.965682476 0.836462073 0.905934146 0.791110423 0.877319179 1 19.92126732 -6.131815914 5.431111968 0.871268981 0.998238546 0.258571574 0.100298697 0.324490316 13.00390614 0.033367564 0.033483067 7.38E-07 6.131815914 0.126969565 ISS(ph)VPNSLSK ddPTM_HeLa_A486_30min_R1 2 ISSVPNSLSK 10 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 IS(0.002)S(0.919)VPNS(0.079)LSK;IS(0.001)S(0.725)VPNS(0.274)LSK ; 114.71 0.00052337 329040000 1438260 1422130 723910 569610 1341890 1511560 1729530 1665430 1095750 1761200 TRUE FALSE FALSE 1337445.401 1309435.239 1004227.339 1326080.866 1173577.644 1325079.096 1296783.301 1286247.945 1190730.492 1320184.057 1.013074953 0.991858092 0.760672221 1.004466657 0.88895002 1.003707846 0.982274626 0.974294409 0.901942791 1 20.33230765 -6.268607915 24.88636916 0.97145175 0.929670156 0.071263755 0.073108699 1643.305981 5704901.16 0.025622332 0.023080966 5.39E-07 6.268607915 -0.041781595 ISSDLDGHPVPK ddPTM_HeLa_A485_30min_R1 1 ISSDLDGHPVPK 12 0 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 0 83.182 0.0095031 19040000 57802 65906 59347 60318 93666 62345 89130 80733 73524 105360 FALSE FALSE TRUE 70659.85549 73613.13339 81301.92493 63613.01961 84340.28416 65609.2878 70086.64737 60933.10517 88279.5924 79095.69101 0.893346459 0.930684497 1.027893225 0.804253921 1.066306939 0.829492567 0.886099438 0.770371994 1.116111273 1 16.27131148 -7.780843938 24.99999757 1.058055673 0.90566923 0.32106251 0.091125215 329.8031616 424892.2926 0.083883185 0.021789445 1.66E-08 7.780843938 -0.152386442 ISSGKSS(ph)PFKVS(ph)PLTFGR ddPTM_HeLa_A486_30min_R1 1 ISSGKSSPFKVSPLTFGR 18 2 O95810 O95810 SDPR Serum deprivation-response protein 2 0 IS(0.173)S(0.197)GKS(0.293)S(0.336)PFKVS(0.972)PLT(0.028)FGR 73.981 0.0034141 117120000 142540 111760 65889 135710 144150 155730 251250 258030 79865 267320 TRUE FALSE FALSE 132548.6821 102903.7306 91402.98537 315939.7384 126069.3629 136517.6159 188384.5925 199282.2018 86787.7625 200381.332 0.661482189 0.513539508 0.456145213 1.576692475 0.629147244 0.681289093 0.940130453 0.994514807 0.433113013 1 17.61238858 ISSILSSLTSVMK ddPTM_HeLa_A485_30min_R1 2 ISSILSSLTSVMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 0 0 ; ; 191.52 3.10E-10 2883300 12613.4 12937 12616.1 13979.7 17526.5 12097.3 19158.7 17960.7 10613.4 19204.5 FALSE FALSE TRUE 15419.20731 14449.86961 17283.32039 14743.37561 15781.50012 12730.69592 15065.28723 13555.81016 12743.41203 14417.17158 1.069502934 1.002267992 1.198801047 1.022626077 1.094632191 0.883023126 1.044954424 0.94025448 0.883905137 1 13.81550054 -6.245765376 24.66695565 0.952601274 1.077065888 0.477271753 0.066507226 620.2689676 976148.0948 0.021447199 0.021374805 5.68E-07 6.245765376 0.124464614 ISSILSSLTSVMK ddPTM_HeLa_A486_30min_R1 1 ISSILSSLTSVMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 0 0 139.86 0.00017967 7558200 10725 9810.8 6910.8 3147.8 10699 9073 13308 10486 8136.2 12012 FALSE FALSE TRUE 9973.232884 9033.356478 9586.846838 7328.237481 9357.031656 7953.665508 9978.197642 8098.566708 8841.452367 9004.117015 1.107630306 1.003247344 1.064718153 0.813876304 1.039194808 0.883336533 1.108181694 0.899429305 0.981934414 1 13.13636909 -4.398610763 1.433210699 0.965761083 1.132265389 0.197023585 0.083459923 1.46936931 3.369953703 0.022877697 0.326690679 3.99E-05 4.398610763 0.166504306 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR ddPTM_HeLa_A485_30min_R1 4 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR 34 0 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 0 ;;; ;;; 229.5 5.49E-59 70952000 24057.1 31141.9 40718 16688.2 43826.5 24583 32261.2 37257.7 26295.8 30666.3 FALSE FALSE TRUE 29408.5189 34783.67431 55781.28262 17599.83411 39462.97978 25870.12787 25368.33107 28120.19066 31573.12586 23021.75578 1.277422938 1.510904496 2.422981251 0.764487048 1.714160299 1.123725232 1.101928598 1.2214616 1.371447346 1 14.49071025 -5.28150442 24.99502409 1.210537796 1.714483265 0.331604025 0.35730975 975.063003 1214633.98 0.098875662 0.146861511 5.23E-06 5.28150442 0.50394547 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR ddPTM_HeLa_A486_30min_R1 3 ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR 34 0 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 0 ;; ;; 210.78 2.05E-49 62331000 16794.3 20171.4 22289.8 4059.09 29795.6 18586.7 24854.7 22566.4 19700.7 17897.1 FALSE FALSE TRUE 15617.1063 18572.9448 30921.0075 9449.766655 26058.35802 16293.66193 18635.79117 17428.52334 21408.37254 13415.54967 1.16410484 1.384434127 2.304863257 0.704389077 1.942399578 1.214535545 1.389118719 1.299128531 1.595787952 1 13.71161855 -12.07555344 0.308092725 3.48E-09 1.475275534 0.090069167 0.415332617 190.4042712 5.156476159 123.9154908 0.387082568 8.40E-13 12.07555344 1.47527553 ISSIQSIVPALEIANAHR ddPTM_HeLa_A485_30min_R1 4 ISSIQSIVPALEIANAHR 18 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 219.79 5.30E-29 886602000 351568 421474 392287 376786 443487 432188 501758 520013 367802 622590 FALSE FALSE TRUE 429773.0887 470761.718 537410.2857 397368.8651 399331.8771 454816.6954 394553.3043 392478.9964 441616.4877 467389.7709 0.919517532 1.007214422 1.149811826 0.850187338 0.854387284 0.973099378 0.844163328 0.839725259 0.944856981 1 18.83426663 -5.287646024 24.99868078 0.892943077 1.023684618 0.36412466 0.074925037 735.9134771 701990.9368 0.020967543 0.031109862 5.16E-06 5.287646024 0.130741541 ISSIQSIVPALEIANAHR ddPTM_HeLa_A486_30min_R1 4 ISSIQSIVPALEIANAHR 18 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 205.88 6.80E-23 592877000 316074 473243 371342 132120 581201 387969 475602 472311 452878 419812 FALSE FALSE TRUE 293918.8448 435741.5012 515135.5673 307582.037 508301.3511 340105.3294 356601.3492 364776.0958 492133.8297 314688.3427 0.933999786 1.384676335 1.636970607 0.977417957 1.615253195 1.080768758 1.133188939 1.159166217 1.5638769 1 18.26356421 ISSIQSIVPALEIANAHRK ddPTM_HeLa_A485_30min_R1 2 ISSIQSIVPALEIANAHRK 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 86.479 0.00063215 20387300 24578 19547.8 17876.1 25721 22466 22222 28148 24895 21161 46091 FALSE FALSE TRUE 30045.29131 21833.74517 24489.21328 27126.0731 20229.20616 23385.50956 22133.94985 18789.46222 25407.8186 34601.36194 0.868326841 0.631008259 0.707752872 0.783959693 0.584636125 0.675855176 0.639684354 0.543026666 0.734301113 1 15.0785412 -12.77305816 11.1096377 0.878732986 0.696432679 0 0.132242164 0 0 0 0.028262489 1.69E-13 12.77305816 -0.182300307 ISSIQSIVPALEIANAHRK ddPTM_HeLa_A486_30min_R1 1 ISSIQSIVPALEIANAHRK 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 84.035 0.00073192 8494300 15820 23817 19900 8065.4 29670 25173 29011 27976 25742 24503 FALSE FALSE TRUE 14711.09969 21929.65418 27605.81294 18776.6588 25948.51194 22067.4112 21752.14095 21606.47551 27973.33729 18367.28931 0.800940163 1.193951585 1.502987865 1.022287964 1.412756749 1.201451713 1.184286945 1.176356246 1.522997586 1 14.16485111 -4.280815789 4.417409598 1.257529377 0.776048033 0.381869936 0.170996605 0.176476251 8.287152276 0.039841102 0.255055295 5.24E-05 4.280815789 -0.481481344 ISSKS(ph)PGHMVILDQTK ddPTM_HeLa_A485_30min_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 IS(0.174)S(0.174)KS(0.653)PGHMVILDQTK 244.89 6.83E-42 1777400000 955500 1154300 744860 928300 1814400 1642800 2625500 3248400 1140200 1749900 TRUE FALSE FALSE 1168047.679 1289285.344 1020414.71 979010.6784 1633751.965 1728814.468 2064540.477 2451724.807 1369027.681 1313682.135 0.889140263 0.981428696 0.77675922 0.745241678 1.243643285 1.316006683 1.57156775 1.866299877 1.04213009 1 20.32518481 -5.943318787 3.135316163 1.421298305 0.852948361 0.486953696 0.243996808 0.198082952 3.974842347 0.080866636 0.090961237 1.14E-06 5.943318787 -0.568349945 ISSKS(ph)PGHMVILDQTK ddPTM_HeLa_A486_30min_R1 2 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 IS(0.172)S(0.172)KS(0.655)PGHMVILDQTK;IS(0.173)S(0.173)KS(0.654)PGHMVILDQTK ; 264.69 3.90E-51 3311400000 3945200 3276200 1978580 579620 4889700 3636900 5895500 5481700 2732500 3817100 TRUE FALSE FALSE 3668661.853 3016581.98 2744739.164 1349384.652 4276388.231 3188216.255 4420383.544 4233636.575 2969355.3 2861273.315 1.282178055 1.054279563 0.959271926 0.471602851 1.494575233 1.114264841 1.544900839 1.479633754 1.037774086 1 21.44822588 -5.801678688 24.99999955 1.307612246 0.95110772 0.282893401 0.259984356 191.1286328 118743.9618 0.08098897 0.091833987 1.58E-06 5.801678688 -0.356504525 ISSLPVSRPIS(ph)PSPSAILER ddPTM_HeLa_A485_30min_R1 3 ISSLPVSRPISPSPSAILER 20 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 ISSLPVSRPIS(0.95)PS(0.035)PS(0.015)AILER;ISSLPVS(0.002)RPIS(0.931)PS(0.051)PS(0.016)AILER;ISSLPVS(0.026)RPIS(0.895)PS(0.061)PS(0.018)AILER ;; 248.16 6.25E-47 2506290000 967764 1206633 1279071 976287 1618695 1173518 1445725 1491759 1226683 1439111 TRUE FALSE FALSE 1183039.763 1347738.233 1752252.589 1029619.087 1457532.042 1234961.588 1136834.043 1125902.766 1472867.026 1080367.113 1.095034965 1.247481729 1.621904785 0.953027054 1.349108118 1.143094392 1.052266429 1.042148315 1.363302353 1 20.0430902 -6.105966656 1.285318029 1.117451652 1.274191038 0.096727468 0.18754433 1.055050768 3.586182402 0.084841042 0.087549658 7.83E-07 6.105966656 0.156739386 ISSLPVSRPIS(ph)PSPSAILER ddPTM_HeLa_A486_30min_R1 4 ISSLPVSRPISPSPSAILER 20 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 ISSLPVSRPIS(0.958)PS(0.039)PS(0.003)AILER;ISSLPVSRPIS(0.985)PS(0.013)PS(0.003)AILER;ISSLPVSRPIS(0.984)PS(0.008)PS(0.008)AILER;ISSLPVS(0.007)RPIS(0.819)PS(0.137)PS(0.037)AILER ;;; 251.37 1.57E-47 6772580000 854016 1030016 859609 302274 1190620 867399 1028043 998240 770256 889260 TRUE FALSE FALSE 794153.8885 948393.7809 1192472.626 703709.1481 1041281.338 760388.1304 770815.7679 770962.5434 837022.4103 666583.5079 1.191379443 1.422768145 1.788932087 1.055695408 1.562116862 1.140724488 1.156367895 1.156588086 1.255690248 1 19.3464261 -6.284677729 23.74590387 1.152566696 1.407226191 0.314150655 0.19343674 543.5283866 555397.0681 0.066709749 0.058877916 5.19E-07 6.284677729 0.254659495 ISSLPVSRPISPS(ph)PSAILER ddPTM_HeLa_A485_30min_R1 1 ISSLPVSRPISPSPSAILER 20 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 ISSLPVSRPIS(0.081)PS(0.867)PS(0.052)AILER 281.28 6.28E-73 2974800000 808980 1124100 1106500 801720 1313400 932970 1028400 1142300 1033700 1245700 TRUE FALSE FALSE 988934.8101 1255553.717 1515840.395 845515.9335 1182633.284 981818.8666 808673.9387 862149.1339 1241154.108 935169.9154 1.057492113 1.342594213 1.620925107 0.90413081 1.264618616 1.049882861 0.864734767 0.921917097 1.327196361 1 19.83486899 -5.279219396 24.95342898 1.045774789 1.340562895 0.3358272 0.188711 895.3871606 1256632.577 0.05384109 0.080061553 5.26E-06 5.279219396 0.294788106 ISSPTETER ddPTM_HeLa_A485_30min_R1 2 ISSPTETER 9 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 ; ; 171.75 2.64E-06 127461000 28666 36195 38421 31017 42948 35762 44708 48894 35793 44799 FALSE FALSE TRUE 35042.6528 40427.6904 52634.52673 32711.38017 38671.94632 37634.44302 35155.77057 36902.66984 42976.32679 33631.43376 1.041961311 1.20208049 1.565039632 0.972643046 1.149875042 1.119025828 1.045324764 1.09726722 1.277861868 1 15.03752266 ISSWLSTFFGRPCHLIK ddPTM_HeLa_A485_30min_R1 2 ISSWLSTFFGRPCHLIK 17 1 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 0 0 ; ; 252.17 4.95E-43 72939000 75817 121211 89580 59182 134118 90530 175097 174063 54310 79629 FALSE FALSE TRUE 92682.23008 135385.5721 122719.3697 62414.9628 120764.741 95270.01081 137686.0955 131373.7763 65209.51884 59778.95576 1.550415676 2.264769773 2.052885805 1.044095903 2.020188199 1.593704835 2.303253608 2.197659271 1.090844061 1 15.86735008 -7.779882375 22.08652615 1.045415375 1.878660364 0.447406472 0.37028007 66.35964069 79459.94288 0.357508621 0.093432573 1.66E-08 7.779882375 0.833244988 ISSWLSTFFGRPCHLIK ddPTM_HeLa_A486_30min_R1 2 ISSWLSTFFGRPCHLIK 17 1 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 0 0 ; ; 217.48 4.20E-25 43813000 81919 63683 48913 24093 71250 79622 118130 99746 73643 111038 FALSE FALSE TRUE 76176.90113 58636.52715 67853.42354 56089.72159 62313.16062 69799.04718 88572.62455 77036.01324 80026.43453 83233.36206 0.915220763 0.704483463 0.815219064 0.673885089 0.748656057 0.838594591 1.064148105 0.925542491 0.961470648 1 16.34487429 -6.577932452 5.130193819 0.980633392 0.766967509 0.683563993 0.069439571 0.114065217 6.335631235 0.026292048 0.020349005 2.64E-07 6.577932452 -0.213665883 IST(ph)PQTNTVPIKPLISTPPVSSQPK ddPTM_HeLa_A486_30min_R1 1 ISTPQTNTVPIKPLISTPPVSSQPK 25 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 IS(0.107)T(0.893)PQTNTVPIKPLISTPPVSSQPK 176.26 1.50E-14 133300000 267770 257320 94312 117250 193730 267810 320360 316940 174470 369810 TRUE FALSE FALSE 249000.7058 236929.0261 130832.1322 272963.9255 169430.5769 234770.3251 240202.5396 244779.6808 189593.2001 277207.1689 0.898247714 0.854700212 0.471965183 0.98469288 0.611205611 0.846912892 0.866509118 0.883020745 0.683940465 1 18.08060504 -6.463967594 24.99887277 0.849776475 0.76159556 0.081640424 0.153320399 746.1093516 316610.172 0.052145729 0.045988122 3.44E-07 6.463967594 -0.088180915 ISTKNEEPVRS(ph)PERR ddPTM_HeLa_A485_30min_R1 4 ISTKNEEPVRSPERR 15 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 ISTKNEEPVRS(1)PERR;ISTKNEEPVRS(1)PERR;ISTKNEEPVRS(1)PERR;ISTKNEEPVRS(1)PERR ;;; 115.57 0.00086313 5925270000 703130 1670290 1433960 730540 4220630 3023690 4878800 10707400 1756960 1672630 TRUE FALSE FALSE 859538.8427 1865615.886 1964441.476 770447.5504 3800409.258 3182005.733 3836404.524 8081393.361 2109565.756 1255674.123 0.684523816 1.485748453 1.564451667 0.61357285 3.026588815 2.534101542 3.055254904 6.435900215 1.680026463 1 20.26003067 -5.814411486 6.950469363 3.222711566 1.151612854 0.295074007 1.377208338 0.243534495 25.23977811 0.423654479 0.485101887 1.53E-06 5.814411486 -2.071098712 ISTKNEEPVRS(ph)PERR ddPTM_HeLa_A486_30min_R1 4 ISTKNEEPVRSPERR 15 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 ISTKNEEPVRS(1)PERR;ISTKNEEPVRS(1)PERR;ISTKNEEPVRS(1)PERR;ISTKNEEPVRS(1)PERR ;;; 102.39 0.002613 2755420000 2330750 1134980 1595280 1475310 4687620 1485770 2989210 4103860 900400 1830550 TRUE FALSE FALSE 2167376.461 1045040.051 2213015.139 3434596.238 4099654.989 1302470.804 2241278.041 3169500.665 978447.397 1372168.365 1.579526621 0.76159754 1.612786882 2.503042867 2.987720089 0.949206261 1.633384137 2.309848227 0.713066575 1 20.38802608 -7.776802099 24.99579919 0.856532477 1.781969207 0.253591366 0.641867654 419.0805959 681842.0724 0.654912327 0.171630751 1.67E-08 7.776802099 0.92543673 ISTS(ph)PSVALSKPYMTVSSEFPAAR ddPTM_HeLa_A485_30min_R1 2 ISTSPSVALSKPYMTVSSEFPAAR 24 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 IS(0.006)T(0.032)S(0.934)PS(0.027)VALSKPYMTVSSEFPAAR;IS(0.004)T(0.125)S(0.869)PS(0.002)VALSKPYMTVSSEFPAAR ; 136.67 8.15E-07 250923000 143887 173508 132889 152129 192132 149568 198194 225750 129218 164946 TRUE FALSE FALSE 175894.1667 193798.2513 182050.1711 160439.4221 173002.6635 157399.1492 155848.2328 170384.4585 155150.8673 123827.9978 1.420471702 1.565060041 1.470185857 1.295663541 1.397120736 1.271111154 1.258586391 1.375976851 1.252954664 1 16.91797802 -11.39060932 0.064267989 1.80E-12 1.988772161 0.77898154 0.068819636 93.64722246 0.75633557 20.16493544 6.355339555 4.07E-12 11.39060932 1.988772161 ISTS(ph)PSVALSKPYMTVSSEFPAAR ddPTM_HeLa_A486_30min_R1 2 ISTSPSVALSKPYMTVSSEFPAAR 24 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 IS(0.013)T(0.109)S(0.813)PS(0.066)VALSKPYMTVSSEFPAAR;IS(0.01)T(0.334)S(0.62)PS(0.037)VALSKPYMTVSSEFPAAR ; 170.46 1.52E-14 273620000 240810 237880 164550 86929 238580 195082 235200 225740 165333 222338 TRUE FALSE FALSE 223930.4625 219029.5225 228268.1668 202375.1051 208655.0717 171014.7663 176350.4723 174343.9299 179664.1976 166663.1176 1.343611386 1.31420512 1.369638166 1.214276488 1.25195709 1.026110448 1.058125366 1.046085855 1.078008141 1 17.34657535 -5.989638672 1.358978706 1.038924457 1.335164275 0.902605597 0.042494096 0.115607417 0.441516673 0.017125533 0.019481776 1.02E-06 5.989638672 0.296239818 ISVAGVTSSNVGYLAHAIHQVTK ddPTM_HeLa_A485_30min_R1 1 ISVAGVTSSNVGYLAHAIHQVTK 23 0 P00505-2;P00505 P00505-2 GOT2 "Aspartate aminotransferase, mitochondrial" 0 0 183.01 3.77E-24 13709000 7117.6 11213 6985.4 6163.3 8928.7 12047 15246 18795 6220 12909 FALSE FALSE TRUE 8700.885565 12524.26281 9569.590147 6499.985473 8039.727277 12677.76229 11988.56755 14185.49678 7468.296947 9691.023873 0.89782934 1.292357028 0.987469464 0.670722264 0.829605559 1.308196374 1.23707956 1.46377689 0.770640651 1 13.24243338 -6.260843942 24.99987833 1.189996055 0.943583317 0.182524378 0.227202159 90.75010758 3810281.984 0.079626471 0.075109994 5.48E-07 6.260843942 -0.246412738 ISVAGVTSSNVGYLAHAIHQVTK ddPTM_HeLa_A486_30min_R1 1 ISVAGVTSSNVGYLAHAIHQVTK 23 0 P00505-2;P00505 P00505-2 GOT2 "Aspartate aminotransferase, mitochondrial" 0 0 199.89 2.14E-29 9766800 5703.5 6229.8 7911.1 2451.8 10792 9464.2 10859 9568.7 9116.7 8211.3 FALSE FALSE TRUE 5303.714103 5736.127959 10974.48979 5707.914307 9438.366729 8296.603229 8141.963345 7390.115893 9906.942896 6155.137033 0.86167279 0.931925305 1.782980578 0.927341548 1.533412933 1.347915275 1.322791564 1.200641976 1.609540591 1 12.58757526 -4.558481841 24.99048094 1.340696327 0.87923535 0.341316202 0.247439852 147.4671515 103509.4768 0.05739408 0.151851552 2.76E-05 4.558481841 -0.461460976 ISVGRLS(ph)PQQESSASSKR ddPTM_HeLa_A485_30min_R1 1 ISVGRLSPQQESSASSKR 18 2 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 IS(0.002)VGRLS(0.998)PQQESSASSKR 95.624 0.00023543 124660000 115190 180420 140960 97334 190770 224160 228670 287210 136390 146510 TRUE FALSE FALSE 140813.6181 201518.5496 193106.9698 102651.11 171776.269 235896.671 179812.7864 216771.2972 163762.222 109987.7533 1.280266337 1.832190798 1.755713377 0.933295816 1.561776323 2.144753974 1.634843708 1.97086758 1.488913238 1 16.74698337 -6.009508797 24.98728527 1.723909842 1.467960989 0.039866474 0.369033937 1155.564374 3036607.44 0.115383986 0.123843457 9.78E-07 6.009508797 -0.255948853 ISVIVETVYTHVLHPYPTQITQSEK ddPTM_HeLa_A485_30min_R1 1 ISVIVETVYTHVLHPYPTQITQSEK 25 0 P04843 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 0 129.34 8.54E-12 4387400 3968.9 2309.6 1570.9 3368 2643.7 2225.6 3013.7 4105.5 1894.5 6831.4 FALSE FALSE TRUE 4851.768112 2579.687629 2152.041281 3551.985312 2380.483945 2342.128975 2369.798375 3098.619688 2274.708773 5128.457703 0.946048187 0.503014313 0.419627382 0.692603024 0.464171508 0.456692657 0.462087924 0.604201081 0.443546365 1 12.32430931 -10.19137262 4.887115124 1.000043612 0.5464228 0.430949298 0.153258448 8.22E-05 1.36E-05 0.144093406 0.034943892 6.44E-11 10.19137262 -0.453620812 ISVIVETVYTHVLHPYPTQITQSEK ddPTM_HeLa_A486_30min_R1 2 ISVIVETVYTHVLHPYPTQITQSEK 25 0 P04843 P04843 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 0 ; ; 155.97 1.46E-17 12900700 8213.7 7173.8 5600.8 1773.63 9884.2 7257.4 8908.3 7053.9 8705.3 8908 FALSE FALSE TRUE 7637.962046 6605.321961 7769.579755 4129.100274 8644.431469 6362.055776 6679.349118 5447.880956 9459.882413 6677.378819 1.143856332 0.989208811 1.163567317 0.618371428 1.294584552 0.952777422 1.000295071 0.815871183 1.416705967 1 12.70506617 -7.757156072 24.99999435 1.208352944 0.99848005 0.150265621 0.200722346 181.4217777 1058936.877 0.137100005 0.047715309 1.75E-08 7.757156072 -0.209872894 ISVLYSFLR ddPTM_HeLa_A486_30min_R1 1 ISVLYSFLR 9 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 0 0 130.56 0.0037096 0 4809.3 5223 4309.5 1829.7 5220.4 4500.6 5160.6 4832.6 4013.5 5331.4 FALSE FALSE TRUE 4472.192905 4809.110458 5978.253812 4259.634068 4565.608754 3945.361731 3869.363297 3732.322475 4361.393412 3996.382738 1.11906021 1.203365837 1.495916233 1.065872402 1.14243531 0.987233203 0.968216397 0.933925182 1.091335264 1 11.96447904 -5.792272722 1.777357285 0.994169412 1.258385402 0.502809573 0.108893647 0.283289271 1.849052487 0.039223851 0.050694992 1.61E-06 5.792272722 0.26421599 ISVS(ph)SPGR ddPTM_HeLa_A485_30min_R1 1 ISVSSPGR 8 0 O75864-2;O75864 O75864-2 PPP1R37 Protein phosphatase 1 regulatory subunit 37 1 0 IS(0.015)VS(0.768)S(0.218)PGR 95.358 0.0025008 0 813540 1172300 1276900 813540 1211100 1057900 1062100 1120800 946200 1062000 TRUE FALSE FALSE 994509.1663 1309390.287 1749278.446 857981.6302 1090518.632 1113290.008 835173.6584 845922.0427 1136093.661 797262.9447 1.247404226 1.642356886 2.194104791 1.076158921 1.367828066 1.396390006 1.04755108 1.061032685 1.42499243 1 19.60469609 -5.297276237 24.99971018 1.208110853 1.689395904 0.437771534 0.258540093 550.6760498 384149.1479 0.073683534 0.109294291 5.04E-06 5.297276237 0.48128505 ISVS(ph)SPGR ddPTM_HeLa_A486_30min_R1 2 ISVSSPGR 8 0 O75864-2;O75864 O75864-2 PPP1R37 Protein phosphatase 1 regulatory subunit 37 1 0 IS(0.01)VS(0.495)S(0.495)PGR;IS(0.011)VS(0.494)S(0.494)PGR ; 107.69 0.0013319 1255950000 2621500 2960100 2666900 797210 3518700 2493300 2778700 2870900 2432400 2851300 TRUE FALSE FALSE 2437746.387 2725530.896 3699595.102 1855945.169 3077351.835 2185701.996 2083439.87 2217258.741 2643242.39 2137315.921 1.14056437 1.275211993 1.730953794 0.868353223 1.439820761 1.02263871 0.974792659 1.037403371 1.236711131 1 21.02736874 -6.001056099 1.274432506 1.056037707 1.322674141 0.187886035 0.220940645 0.730532522 2.469082206 0.095502194 0.108420106 9.98E-07 6.001056099 0.266636434 ISVSFYHVK ddPTM_HeLa_A485_30min_R1 2 ISVSFYHVK 9 0 P55884-2;P55884 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 0 ; ; 133.13 0.00038585 178495000 394780 507210 483130 283830 762930 415550 550070 572130 410360 526380 FALSE FALSE TRUE 482597.449 566523.7974 661859.8917 299334.9142 686970.0104 437307.5554 432543.0508 431814.2204 492715.488 395163.1533 1.221261256 1.4336453 1.67490285 0.757497028 1.738446524 1.106650637 1.09459358 1.092749202 1.246865969 1 18.5920889 ISVSFYHVK ddPTM_HeLa_A486_30min_R1 2 ISVSFYHVK 9 0 P55884-2;P55884 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 0 ; ; 164.96 1.92E-06 143010000 382930 389530 285440 59079 413280 344310 402580 358900 330220 272320 FALSE FALSE TRUE 356088.5845 358662.2242 395970.0123 137538.8977 361442.5687 301832.5329 301850.2259 277186.3047 358843.7355 204129.2995 1.744426622 1.757034512 1.939799986 0.673783225 1.770655019 1.47863405 1.478720726 1.357895733 1.75792371 1 17.63912375 -10.92277657 0.064785844 6.66E-32 2.272107676 0.184559758 0.339393003 327.2208368 3.033403071 85.90398645 30.79364026 1.19E-11 10.92277657 2.272107676 ISVYYNEATGGK ddPTM_HeLa_A485_30min_R1 2 ISVYYNEATGGK 12 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 0 ; ; 275.76 2.96E-50 381570000 415370 457710 362760 495820 591910 539940 678620 690690 433200 686790 FALSE FALSE TRUE 507767.6235 511235.203 496960.0197 522905.3911 532977.3621 568210.4235 533627.2932 521297.1945 520139.2665 515585.8924 0.984836146 0.991561659 0.963874355 1.014196468 1.033731469 1.102067438 1.034992037 1.011077305 1.008831456 1 18.97585326 -5.496423492 3.743991947 1.035615725 0.981457024 0.411537327 0.027317291 0.231282061 6.944586536 0.008745071 0.012657886 3.19E-06 5.496423492 -0.0541587 ISVYYNEATGGK ddPTM_HeLa_A486_30min_R1 2 ISVYYNEATGGK 12 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 0 ; ; 334.89 1.09E-91 270550000 406060 431270 284690 149717 467430 459330 531970 531210 357000 526850 FALSE FALSE TRUE 377597.2909 397094.5945 394929.5923 348548.7423 408800.5708 402662.5347 398865.4794 410265.0792 387945.0474 394923.3308 0.956128092 1.005497937 1.000015855 0.882573186 1.035139074 1.019596725 1.009982061 1.03884741 0.98233003 1 18.59121307 ISYIPDEEVS(ph)SPSPPQR ddPTM_HeLa_A486_30min_R1 1 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 0 ISYIPDEEVS(0.499)S(0.499)PS(0.002)PPQR 83.54 0.0021282 212870000 35394 38994 29505 15199 53455 42489 58959 48584 31593 45917 TRUE FALSE FALSE 32913.06337 35903.97343 40930.12617 35384.04011 46750.17545 37247.13918 44206.8346 37522.48378 34331.50668 34419.08433 0.956244596 1.043141447 1.189169525 1.028035487 1.358263195 1.082165313 1.284369862 1.090165079 0.99745555 1 15.0709211 -4.531291946 3.7058995 1.14028907 0.966815639 0.181734308 0.113907735 0.32872538 9.553653873 0.028495446 0.108459431 2.94E-05 4.531291946 -0.173473431 ISYIPDEEVSSPS(ph)PPQR ddPTM_HeLa_A485_30min_R1 2 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 0 ISYIPDEEVS(0.001)S(0.48)PS(0.52)PPQR;ISYIPDEEVSS(0.029)PS(0.971)PPQR ; 282.67 1.04E-59 355430000 133496 185880 177917 157252 203072 173667 212823 231452 175746 214017 TRUE FALSE FALSE 163191.7246 207617.0491 243735.902 165842.2786 182853.4387 182759.9356 167351.6274 174688.0341 211016.6102 160666.5006 1.015717178 1.292223633 1.517030004 1.032214419 1.138093118 1.137511148 1.041608716 1.087271046 1.313382749 1 17.29370963 ISYIPDEEVSSPS(ph)PPQR ddPTM_HeLa_A486_30min_R1 2 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 0 ISYIPDEEVSSPS(1)PPQR;ISYIPDEEVSSPS(1)PPQR ; 324.45 6.47E-80 333450000 159056 192467 155489 66560 218902 165816 204300 199684 151252 178733 TRUE FALSE FALSE 147906.9958 177215.214 215698.5049 154955.0438 191445.27 145359.3078 153181.9791 154220.3123 164362.6451 133977.0934 1.103972268 1.32272771 1.60996555 1.156578634 1.428940314 1.084956421 1.143344546 1.151094626 1.226796618 1 17.03162683 -6.270572448 24.92959942 1.132063482 1.330879186 0.340308512 0.140912289 786.8922905 2147893.163 0.049014354 0.043823899 5.36E-07 6.270572448 0.198815704 ISYMLS(ph)IY(ph)K ddPTM_HeLa_A485_30min_R1 1 ISYMLSIYK 9 0 Q14571 Q14571 ITPR2 "Inositol 1,4,5-trisphosphate receptor type 2" 2 0 IS(0.001)Y(0.029)MLS(0.992)IY(0.978)K 41.399 0.012446 0 137870 129630 148690 199270 199240 114170 157270 131390 145240 222360 TRUE FALSE FALSE 168538.7059 144789.1009 203696.6185 210155.6155 179402.966 120147.7647 123667.9797 99166.39649 174388.3358 166929.7442 1.009638556 0.867365499 1.220253583 1.25894649 1.074721386 0.719750487 0.74083849 0.594060675 1.044681022 1 17.34888152 -6.249349959 21.11654514 0.789555722 1.091074779 0.402095334 0.160204055 90.41491538 157926.3631 0.054552995 0.053962173 5.63E-07 6.249349959 0.301519057 ISYT(ph)PPES(ph)PVPSYASSTPLHVPVPR ddPTM_HeLa_A485_30min_R1 4 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 2 0 IS(0.014)Y(0.03)T(0.957)PPES(1)PVPSYASSTPLHVPVPR;IS(0.024)Y(0.004)T(0.972)PPES(0.999)PVPSYASSTPLHVPVPR;IS(0.019)Y(0.023)T(0.959)PPES(0.998)PVPS(0.002)YASSTPLHVPVPR;IS(0.011)Y(0.03)T(0.958)PPES(0.822)PVPS(0.177)YASSTPLHVPVPR ;;; 156.52 1.80E-09 2477730000 556309 826957 822342 527662 968803 771137 879491 990929 713332 779815 TRUE FALSE FALSE 680058.0178 923662.4276 1126560.526 556486.8389 872345.5716 811512.5409 691580.5631 747902.109 856491.1893 585421.4719 1.161655406 1.577773402 1.924358057 0.950574698 1.490115436 1.386202215 1.181337884 1.277544718 1.463033439 1 19.15911614 -13.1129979 0.126562547 1.54E-08 1.565254497 0.171906416 0.25184625 197.575522 1.97846188 52.85435513 2.202585779 7.71E-14 13.1129979 1.565254482 ISYT(ph)PPES(ph)PVPSYASSTPLHVPVPR ddPTM_HeLa_A486_30min_R1 4 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 2 0 IS(0.119)Y(0.106)T(0.781)PPES(0.99)PVPS(0.003)YASSTPLHVPVPR;IS(0.01)Y(0.028)T(0.962)PPES(0.998)PVPS(0.002)YASSTPLHVPVPR;IS(0.013)Y(0.029)T(0.957)PPES(1)PVPSYASSTPLHVPVPR;IS(0.024)Y(0.073)T(0.905)PPES(0.987)PVPS(0.011)YASSTPLHVPVPR ;;; 141.78 9.56E-09 2013020000 367743 439056 427340 83634 556580 401512 455310 471282 390328 395545 TRUE FALSE FALSE 341966.1147 404263.6035 592817.4926 194704.1786 486768.5465 351977.5317 341386.6222 363981.3766 424161.9453 296497.9574 1.153350659 1.363461681 1.999398234 0.656679663 1.641726475 1.187116211 1.151396202 1.227601633 1.430572908 1 18.17766264 -5.255485418 24.99746814 1.212213328 1.491209265 0.176452068 0.312906388 968.3731859 4065662.423 0.082849441 0.138887231 5.55E-06 5.255485418 0.278995937 ISYT(ph)PPESPVPSYASSTPLHVPVPR ddPTM_HeLa_A485_30min_R1 3 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 IS(0.006)YT(0.994)PPESPVPSYASSTPLHVPVPR;IS(0.006)Y(0.001)T(0.993)PPESPVPSYASSTPLHVPVPR;IS(0.026)Y(0.046)T(0.925)PPES(0.003)PVPSYASSTPLHVPVPR ;; 177.35 7.97E-15 819306000 212471 349768 376106 209438 439801 327505 415026 425929 341217 331267 TRUE FALSE FALSE 259734.4409 390670.325 515243.2605 220879.0676 396012.8682 344652.6554 326352.3046 321469.2449 409696.1221 248688.2334 1.044417894 1.570924043 2.071844146 0.888176592 1.592406938 1.385882439 1.312294917 1.292659651 1.647428656 1 17.92397872 -10.86908105 2.278562883 0.784988841 1.427420436 0.140670376 0.313386993 10385925.2 5437605.96 12069822.81 0.077672538 1.35E-11 10.86908105 0.642431595 ISYT(ph)PPESPVPSYASSTPLHVPVPR ddPTM_HeLa_A486_30min_R1 3 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 IS(0.033)Y(0.011)T(0.948)PPES(0.008)PVPSYASSTPLHVPVPR;IS(0.16)Y(0.09)T(0.696)PPES(0.054)PVPSYASSTPLHVPVPR;IS(0.031)Y(0.122)T(0.702)PPES(0.144)PVPSYASSTPLHVPVPR ;; 134.45 4.16E-06 698972000 208032.9 292272 260864 28166.9 357341 258014 290849 289144 262406 235032 TRUE FALSE FALSE 193450.868 269111.3023 361877.527 65573.96668 312519.9597 226182.856 218075.5039 223312.2232 285151.5634 176178.4574 1.098039288 1.52749267 2.054039593 0.372201957 1.773882938 1.28382811 1.23781027 1.267534218 1.6185382 1 17.426678 -11.06251669 2.5463627 0.48143467 1.359320335 0.059949016 0.426794071 8447513.163 5347465.452 25426159.11 0.102078772 8.66E-12 11.06251669 0.877885664 IT(ph)ESSLVEITEHK ddPTM_HeLa_A485_30min_R1 1 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.373)ES(0.313)S(0.313)LVEITEHK 109.83 0.00041569 46251000 74832 59873 38746 74010 63099 51400 62338 58937 43229 95493 TRUE FALSE FALSE 91478.12023 66874.62652 53079.75776 78052.9789 56816.64201 54091.22452 49018.97705 44482.60834 51904.66378 71688.35252 1.276052762 0.932852049 0.740423735 1.088781875 0.792550533 0.754532956 0.683778819 0.620499799 0.724032035 1 16.12945112 -5.908971262 5.45020115 0.732801296 0.983904028 0.365686798 0.156718844 0.232424562 11.00307934 0.049294631 0.056134994 1.23E-06 5.908971262 0.251102732 IT(ph)ESSLVEITEHK ddPTM_HeLa_A486_30min_R1 1 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.393)ES(0.303)S(0.303)LVEITEHK 109.84 0.0004156 30103000 61664 61735 34545 21314 51676 57514 65569 64154 43742 66516 TRUE FALSE FALSE 57341.67203 56842.89376 47921.74915 49620.06915 45194.31422 50418.50744 49162.94268 49547.53467 47533.59178 49859.96065 1.150054498 1.140050915 0.961126895 0.995188694 0.906424988 1.011202311 0.986020487 0.99373393 0.953341943 1 15.60559412 -4.757452719 24.9898211 0.975488856 1.145052794 0.847731267 0.028678801 32.52466917 203868.3549 0.007190863 0.017620502 1.75E-05 4.757452719 0.169563938 IT(ph)GCDPFR ddPTM_HeLa_A486_30min_R1 1 ITGCDPFR 8 0 A0A087WT90 A0A087WT90 MRPL46 1 0 IT(1)GCDPFR 85.666 0.023465 39864000 103410 139480 164170 49048 162120 177730 159860 151800 197360 172440 TRUE FALSE FALSE 96161.49301 128427.0968 227741.0206 114186.2227 141785.3979 155803.4796 119861.3372 117238.4538 214467.3237 129259.9016 0.743939086 0.99355713 1.761884527 0.883384726 1.096901639 1.205350443 0.927289404 0.906997857 1.659194546 1 16.97991527 -7.735907678 24.99993392 1.329598834 1.08087612 0.107808533 0.301789471 467.9572381 458213.0592 0.202150093 0.07634529 1.84E-08 7.735907678 -0.248722714 IT(ph)PPAAKPGS(ph)PQAK ddPTM_HeLa_A485_30min_R1 3 ITPPAAKPGSPQAK 14 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 IT(1)PPAAKPGS(1)PQAK;IT(1)PPAAKPGS(1)PQAK;IT(1)PPAAKPGS(1)PQAK ;; 80.316 0.0041462 2269420000 2847260 1829980 1019430 5671800 2846920 2402420 4974100 4254670 1825450 7155300 TRUE FALSE FALSE 3480623.164 2043980.242 1396559.579 5981636.072 2563470.649 2528206.996 3911342.9 3211205.511 2191801.071 5371615.394 0.647965818 0.380515002 0.259988751 1.11356373 0.477225278 0.470660465 0.728150214 0.597810021 0.40803388 1 22.35692458 -11.07940578 2.392342656 1.670605508 0.567048616 0.25267447 0.22446637 11908336.42 4071376.446 43495419.09 0.059765552 8.33E-12 11.07940578 -1.103556892 IT(ph)PPAAKPGS(ph)PQAK ddPTM_HeLa_A486_30min_R1 2 ITPPAAKPGSPQAK 14 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 IT(1)PPAAKPGS(1)PQAK;IT(1)PPAAKPGS(1)PQAK ; 87.49 0.0013704 2238500000 2006980 1701340 521770 1334030 1348600 2435200 3399400 2977000 1253840 3747700 TRUE FALSE FALSE 1866301.066 1566519.622 723813.3175 3105689.258 1179446.013 2134769.783 2548834.165 2299202.087 1362523.861 2809251.527 0.664341035 0.557628823 0.257653439 1.105521962 0.419843507 0.759906959 0.907300091 0.818439383 0.485013125 1 21.42175437 -5.248180605 24.99989672 0.766398557 0.499649908 0.268526244 0.219203839 1150.941834 2170138.585 0.057844878 0.099439907 5.65E-06 5.248180605 -0.266748648 IT(ph)PVTVK ddPTM_HeLa_A485_30min_R1 2 ITPVTVK 7 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R349;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 IT(1)PVTVK;IT(0.998)PVT(0.002)VK ; 110.76 0.014275 1301730000 2094450 1379160 1117400 3103800 1993660 1673660 2429990 1923710 1560570 4006400 TRUE FALSE FALSE 2560353.177 1540440.765 1530772.759 3273352.735 1795164.21 1761290.25 1910802.785 1451917.106 1873762.085 3007678.212 0.851272309 0.512169406 0.508954965 1.088332097 0.596860463 0.585597968 0.635308251 0.48273685 0.622992871 1 21.52021879 -10.14428533 5.14865819 1.000013793 0.648901045 0.259295507 0.175361416 2.80E-05 4.65E-06 0.171090879 0.041494005 7.17E-11 10.14428533 -0.351112747 IT(ph)PVTVK ddPTM_HeLa_A486_30min_R1 4 ITPVTVK 7 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R349;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 IT(1)PVTVK;IT(0.992)PVT(0.008)VK;IT(1)PVTVK;IT(0.998)PVT(0.002)VK ;;; 112.8 0.013335 1660290000 4608210 4828780 2221180 2213220 3873520 5381550 6072700 5566380 3468730 6436600 TRUE FALSE FALSE 4285198.276 4446129.887 3081280.381 5152488.01 3387667.002 4717629.077 4553246.23 4299036.787 3769402.309 4824833.465 0.88815465 0.921509503 0.638629375 1.067910022 0.702131385 0.977780707 0.943710547 0.891022834 0.781250241 1 22.20204772 ITAHSS(ph)PPLTK ddPTM_HeLa_A485_30min_R1 2 ITAHSSPPLTK 11 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 ITAHS(0.036)S(0.964)PPLTK;ITAHS(0.174)S(0.825)PPLTK ; 95.981 0.0014311 1991380000 2599500 2789100 2381400 2846800 3610100 3051900 3829900 3908500 2636700 3752700 TRUE FALSE FALSE 3177749.807 3115260.983 3262378.958 3002313.476 3250665.768 3211692.765 3011610.578 2949934.247 3165861.505 2817220.953 1.127973226 1.10579221 1.158013167 1.065700392 1.153855456 1.140021609 1.069000489 1.047107875 1.123753357 1 21.42584129 -9.08756744 0.290072569 0.964665335 1.132436201 0.507705755 0.034498304 5.25302567 0.639334401 0.249881478 0.046655994 8.17E-10 9.08756744 0.167770866 ITAHSS(ph)PPLTK ddPTM_HeLa_A486_30min_R1 3 ITAHSSPPLTK 11 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 ITAHS(0.065)S(0.935)PPLTK;ITAHS(0.312)S(0.688)PPLTK;ITAHS(0.232)S(0.768)PPLTK ;; 112.42 0.00034398 2435140000 2880800 3022930 1852720 892281 3113920 2742430 3137900 3261500 2251700 3194590 TRUE FALSE FALSE 2678870.796 2783382.017 2570142.802 2077275.261 2723343.117 2404096.87 2352764.231 2518927.648 2446879.169 2394643.871 1.118692775 1.162336518 1.073288113 0.867467304 1.137264355 1.003947559 0.98251112 1.051900735 1.021813389 1 21.19137968 -4.999908917 18.50789113 1.01196513 1.134840807 0.407600356 0.063531973 0.128601566 23373.55181 0.01617474 0.032710459 1.00E-05 4.999908917 0.122875677 ITDQY(ph)RPKWR ddPTM_HeLa_A486_30min_R1 1 ITDQYRPKWR 10 2 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 1 0 IT(0.003)DQY(0.997)RPKWR 42.001 0.036325 214340000 31768 15801 16560 4369.5 43083 19006 12388 14419 7979.5 15196 TRUE FALSE FALSE 29541.22725 14548.87121 22972.47549 10172.41682 37679.12841 16661.23296 9288.391373 11136.10846 8671.169485 11390.82269 2.5934235 1.27724499 2.01675297 0.893036183 3.307849611 1.462689168 0.815427614 0.977638645 0.761241722 1 13.47558433 -6.526512047 11.34725117 0.922193698 1.961044334 0.420988172 0.622218884 0.168445408 443.1934813 0.227578278 0.180941932 2.98E-07 6.526512047 1.038850636 ITEAPAS(ph)EKEIVEVK ddPTM_HeLa_A486_30min_R1 1 ITEAPASEKEIVEVK 15 1 Q5JSK8;Q5JSL0;Q5JSK6;P82970;Q5JSK9 Q5JSK8 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 1 0 ITEAPAS(1)EKEIVEVK 102.37 0.00021982 116460000 261450 200880 78322 116850 130950 256670 343560 242460 163820 452540 TRUE FALSE FALSE 243123.7051 184961.5372 108650.3759 272032.7053 114525.0299 225004.665 257597.6542 187257.1509 178020.0495 339221.0385 0.716711753 0.545253732 0.320293742 0.801933472 0.337611813 0.663298084 0.759379947 0.552021041 0.52479071 1 18.37186612 -14 0.385542165 7.165653521 0.568525254 0.395790574 0.154867788 647.5156984 4.774881774 3344.107788 0.100950758 1.00E-14 14 -6.597128267 ITEFCHR ddPTM_HeLa_A485_30min_R1 5 ITEFCHR 7 0 H7BZ94;P07237;I3L398;H0Y3Z3 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ;;;; ;;;; 190.88 0.0013422 632566000 518980 707575.1 748805.9 598484 873340 678360 829992 883416 669880 811041 FALSE FALSE TRUE 634425.3105 790319.8529 1025820.363 631177.6655 786387.2031 713877.8807 652657.4288 666756.8409 804318.7715 608863.4048 1.041982989 1.298024888 1.684811987 1.036649042 1.291565886 1.172476248 1.071927502 1.09508444 1.321016775 1 19.21575908 ITEFCHR ddPTM_HeLa_A486_30min_R1 4 ITEFCHR 7 0 H7BZ94;P07237;I3L398;H0Y3Z3 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ;;; ;;; 170.06 0.0018137 834960000 668725 787235 675356 220412 999430 716897 780220 825180 640617 768361 FALSE FALSE TRUE 621850.8308 724851.6315 936871.9299 513130.275 874072.1701 628453.537 585000.7037 637304.5276 696146.1974 575958.4044 1.079680105 1.258513854 1.626631234 0.890915509 1.517595999 1.091143965 1.01569957 1.106511378 1.208674432 1 19.1356051 -6.460285144 24.99956487 1.08614199 1.275240671 0.185937543 0.199060964 388.3360384 155099.0644 0.067648633 0.05966043 3.47E-07 6.460285144 0.189098681 ITES(ph)DLSQLTASIR ddPTM_HeLa_A486_30min_R1 1 ITESDLSQLTASIR 14 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 IT(0.008)ES(0.984)DLS(0.005)QLT(0.001)AS(0.001)IR 60.209 0.029243 29269000 28466 37198 37908 13112 56433 37603 43906 48793 31332 34571 TRUE FALSE FALSE 26470.6804 34250.29501 52586.99281 30525.39864 49354.64692 32963.92418 32920.25441 37683.89904 34047.88299 25914.19658 1.021474091 1.321680759 2.029273516 1.177941155 1.904540886 1.272041141 1.270355973 1.454179717 1.313869905 1 14.66145505 ITES(ph)SLVEITEHK ddPTM_HeLa_A486_30min_R1 1 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.079)ES(0.461)S(0.461)LVEITEHK 173.03 2.16E-12 170740000 52101 50774 26579 17125 37029 48207 52689 48107 37878 59002 TRUE FALSE FALSE 48448.98895 46750.48332 36871.10061 39867.86545 32384.47754 42259.71047 39505.65491 37154.08627 41161.29554 44227.51516 1.095449038 1.057045216 0.833668825 0.901426754 0.732224666 0.955507229 0.893237044 0.840067233 0.930671673 1 15.43265657 -4.699789292 6.070978217 0.878067403 1.082363435 0.537656204 0.070449458 0.135188492 9.529643421 0.017223426 0.046229382 2.00E-05 4.699789292 0.204296033 ITES(ph)SLVEITEHKDFTLK ddPTM_HeLa_A485_30min_R1 1 ITESSLVEITEHKDFTLK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.064)ES(0.468)S(0.468)LVEITEHKDFTLK 147.67 2.46E-08 42793000 50243 38099 30547 67887 70558 48726 87921 86869 38778 93000 TRUE FALSE FALSE 61419.38201 42554.34663 41847.60647 71595.49491 63532.99778 51277.21802 69135.9601 65564.24154 46560.38891 69816.81154 0.879721956 0.609514323 0.599391544 1.025476434 0.909995693 0.734453735 0.99024803 0.939089599 0.666893659 1 16.09128685 -5.253237329 24.87407476 0.890510772 0.68753978 0.329950906 0.129630714 668.9672243 2028749.11 0.034974766 0.05928034 5.58E-06 5.253237329 -0.202970992 ITES(ph)SLVEITEHKDFTLK ddPTM_HeLa_A486_30min_R1 3 ITESSLVEITEHKDFTLK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.013)ES(0.494)S(0.494)LVEITEHKDFTLK;IT(0.007)ES(0.497)S(0.497)LVEITEHKDFTLK;IT(0.05)ES(0.475)S(0.475)LVEITEHKDFTLK ;; 276.25 2.58E-69 203372000 251551 243418 138043 138428 292103 307984 402990 405472 207148 334544 TRUE FALSE FALSE 233918.5739 224128.6712 191496.9465 322267.3798 255464.718 269988.0654 302157.6396 313154.877 225103.7554 250772.0049 0.93279381 0.893754753 0.763629683 1.285101102 1.018713066 1.076627615 1.204909774 1.248763302 0.897643082 1 17.93601678 -5.251662169 24.99027863 1.114345318 0.866428948 0.461365596 0.11905849 586.8200939 1499892.758 0.031610719 0.053908628 5.60E-06 5.251662169 -0.24791637 ITESEEVVSR ddPTM_HeLa_A485_30min_R1 1 ITESEEVVSR 10 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 192.91 2.20E-10 37444000 17818 21244 22176 18656 42717 18270 31983 26735 22430 41674 FALSE FALSE TRUE 21781.55263 23728.301 30379.82522 19675.13004 38463.94549 19226.58895 25149.57077 20178.19933 26931.49526 31285.43875 0.696220143 0.758445524 0.971053194 0.628890974 1.229452008 0.614553918 0.803874639 0.644970956 0.860831631 1 14.93320372 -11.13729239 1.650987238 1.333325571 0.802238484 0.10092619 0.178216456 881829.8 176022.6414 1098819.739 0.046444009 7.29E-12 11.13729239 -0.531087087 ITESS(ph)LVEITEHK ddPTM_HeLa_A485_30min_R1 3 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.003)ES(0.019)S(0.979)LVEITEHK;ITES(0.03)S(0.97)LVEITEHK;ITES(0.226)S(0.774)LVEITEHK ;; 270.79 2.67E-43 331476000 589060 457219 322158 646148 419094 372824 472490 378129 331749 702640 TRUE FALSE FALSE 720094.3648 510686.7848 441337.6503 681445.4291 377367.5298 392344.4881 371538.6516 285392.2699 398327.9813 527484.7791 1.365147191 0.968154542 0.836683195 1.291876953 0.715409325 0.743802482 0.704359 0.541043611 0.755145925 1 19.00876994 -5.783226244 24.99785529 0.718424167 1.085030213 0.512195446 0.175936236 192.4635189 220828.0932 0.053749445 0.060996765 1.65E-06 5.783226244 0.366606046 ITESS(ph)LVEITEHK ddPTM_HeLa_A486_30min_R1 2 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 ITES(0.033)S(0.967)LVEITEHK;IT(0.014)ES(0.01)S(0.976)LVEITEHK ; 299.17 6.60E-58 184149000 347769 360860 165811 97452 230909 325728 352590 306271 263845 393450 TRUE FALSE FALSE 323392.189 332264.1394 230017.4598 226873.181 201946.2401 285542.9911 264368.2527 236539.7791 286715.297 294927.5591 1.096513971 1.126595766 0.77991172 0.769250529 0.68473167 0.968180091 0.896383687 0.802026707 0.972154986 1 18.17000111 -2.36231476 9.600512438 0.897621632 0.974991863 0 0.140641098 0 0 0.034482353 0 0.004341954 2.36231476 0.077370231 ITFLLQAIR ddPTM_HeLa_A485_30min_R1 2 ITFLLQAIR 9 0 H0Y8C6;O00410;O00410-3;C9J875;C9JQT6;C9JZD8;E7ETV8;E7ESZ1;E7EWK4;E7EX05;E7EV12;E7EQT5;E7ETV3 H0Y8C6 IPO5 Importin-5 0 0 ; ; 233.89 1.68E-23 135814000 119146 140858 142310 138381 191690 113938 152939 153930 99079 185329 FALSE FALSE TRUE 145649.6167 157330.1178 194956.391 145940.4036 172604.6705 119903.6175 120262.3333 116178.4261 118963.2465 139129.891 1.046860711 1.130814641 1.401254537 1.048950751 1.240600918 0.861810619 0.864388898 0.835035701 0.855051676 1 17.08607288 -6.267640133 24.86111018 0.871767813 1.177025814 0.660502777 0.103936393 276.4835652 1108521.208 0.035748036 0.032302264 5.40E-07 6.267640133 0.305258 ITFLLQAIR ddPTM_HeLa_A486_30min_R1 2 ITFLLQAIR 9 0 H0Y8C6;O00410;O00410-3;C9J875;C9JQT6;C9JZD8;E7ETV8;E7ESZ1;E7EWK4;E7EX05;E7EV12;E7EQT5;E7ETV3 H0Y8C6 IPO5 Importin-5 0 0 ; ; 233.89 1.68E-23 141457000 114424 107467 95070 46277 119677 98422 124973 113658 91435 116153 FALSE FALSE TRUE 106403.4685 98950.92353 131883.6501 107735.1947 104665.9947 86279.69432 93703.43357 87780.55454 99360.65942 87067.53277 1.222079748 1.136484754 1.514728233 1.237375073 1.202124275 0.99095141 1.07621556 1.008189296 1.141190709 1 16.40984722 -6.039889813 2.975047315 1.046213617 1.2832417 0.55662937 0.099233052 0.206446473 3.662196469 0.034748076 0.036792153 9.12E-07 6.039889813 0.237028083 ITGHFYACQVAQR ddPTM_HeLa_A485_30min_R1 2 ITGHFYACQVAQR 13 0 O00425;O00425-2 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 0 0 ; ; 99.011 0.011269 8508900 15198 18006.8 21193.9 18271.7 27965 15657.1 24005.1 25312 20140.3 25713.8 FALSE FALSE TRUE 18578.74267 20112.53862 29034.40556 19269.8367 25180.70641 16476.88155 18876.21428 19104.19231 24182.27347 19303.82289 0.962438517 1.041894071 1.504075422 0.998239407 1.304441434 0.853555363 0.977848501 0.989658495 1.252719402 1 14.23659896 -6.257065459 24.97909373 1.01180327 1.165415295 0.151772848 0.174152071 732.8204952 4185084.159 0.058668646 0.05667923 5.53E-07 6.257065459 0.153612025 ITGS(ph)PTLVK ddPTM_HeLa_A485_30min_R1 1 ITGSPTLVK 9 0 A0A0U1RQE0;O15409;A0A0U1RQM2;A0A0U1RQY3;A0A0U1RQR8;O15409-9;A8MUV4;O15409-4;O15409-2;Q0PRL4 A0A0U1RQE0 FOXP2 Forkhead box protein P2 1 0 IT(0.022)GS(0.954)PT(0.024)LVK 57.019 0.037821 228580000 203630 396100 517560 188260 466120 294440 313650 324170 325200 226130 TRUE FALSE FALSE 248926.791 442420.4494 709026.9815 198544.1671 419711.4562 309856.4231 246636.1152 244666.7992 390464.6571 169759.9526 1.466345785 2.606153233 4.176644553 1.169558332 2.472382029 1.825262191 1.452852168 1.441251576 2.300098763 1 17.37313663 -5.308902105 24.99970265 1.715665174 2.735365872 0.304794211 0.747353632 503.420236 265161.9038 0.21021436 0.311799215 4.91E-06 5.308902105 1.019700698 ITHS(ph)PDSVK ddPTM_HeLa_A486_30min_R1 2 ITHSPDSVK 9 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 IT(0.035)HS(0.965)PDSVK;ITHS(0.97)PDS(0.03)VK ; 130.01 0.00024614 441537000 556950 563770 328400 138356 567490 618450 664030 636520 459880 582300 TRUE FALSE FALSE 517910.6811 519094.812 455565.2749 322099.7601 496310.1126 542151.9269 497882.6706 491598.2911 499742.7687 436488.2899 1.186539692 1.189252551 1.043705605 0.737934482 1.137052526 1.242076682 1.140655276 1.126257686 1.144916783 1 18.73558342 -5.955652431 24.99999918 1.144877602 1.036265303 0.105314721 0.128781147 292.3434791 164801.1015 0.042776409 0.048503864 1.11E-06 5.955652431 -0.108612298 ITITNDKGR ddPTM_HeLa_A485_30min_R1 4 ITITNDKGR 9 1 P11142;E9PKE3;E9PNE6;A8K7Q2;P54652;E9PS65;E9PM13;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;Q53FA3;P34931 P11142;A0A0G2JIW1;P17066;Q53FA3 HSPA8;HSPA2;HSPA1B;HSPA1A;HSPA6;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like 0 0 ;;; ;;; 215.06 4.33E-17 1279147000 473524 809020 532973 440370 828800 870120 1052460 1420620 578560 583452 FALSE FALSE TRUE 578857.7802 903627.8515 730141.8916 464426.298 746281.7619 915678.1377 827593.3232 1072210.718 694671.6851 438008.154 1.321568502 2.06303888 1.666959587 1.060314274 1.70380792 2.090550437 1.889447298 2.447924103 1.585978888 1 18.7405982 -6.004310927 24.9852613 1.898524024 1.5518603 0.062170306 0.425796906 393.3397461 2279737.54 0.130344082 0.144286355 9.90E-07 6.004310927 -0.346663724 ITITNDKGR ddPTM_HeLa_A486_30min_R1 1 ITITNDKGR 9 1 P11142;E9PKE3;E9PNE6;A8K7Q2;P54652;E9PS65;E9PM13;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;Q53FA3;P34931 P11142;A0A0G2JIW1;P17066;Q53FA3 HSPA8;HSPA2;HSPA1B;HSPA1A;HSPA6;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like 0 0 123.75 0.0010254 36525000 31077 28352 22042 10973 41241 28298 33789 36767 20926 36319 FALSE FALSE TRUE 28898.66278 26105.28426 30577.25271 25545.69854 36068.16922 24806.88047 25334.63482 28395.95672 22739.88253 27224.486 1.061495258 0.958889885 1.123152617 0.938335385 1.324842982 0.911197386 0.930582668 1.04303004 0.835273163 1 14.73261719 ITITNDQNR ddPTM_HeLa_A485_30min_R1 1 ITITNDQNR 9 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 197.81 2.23E-11 48714000 22760 30740 29531 28534 39540 29648 34523 40785 30133 44860 FALSE FALSE TRUE 27822.88348 34334.7756 40455.74579 30092.74017 35603.25877 31200.32344 27146.87902 30782.4148 36180.4167 33677.22759 0.826163122 1.019525004 1.201278985 0.893563465 1.057190907 0.926451661 0.806090078 0.914042426 1.074328836 1 15.03948576 -6.289190463 23.02565354 0.930179435 1.005973996 0.048422953 0.112803081 726.9008942 603120.7986 0.040501479 0.035731374 5.14E-07 6.289190463 0.075794561 ITKFENAFLSHVVSQHQALLGTIR ddPTM_HeLa_A485_30min_R1 2 ITKFENAFLSHVVSQHQALLGTIR 24 1 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 210.22 2.54E-36 54888000 54603 78571 80299 37722 108913 81928 102278 135115 63454 93477 FALSE FALSE TRUE 66749.24897 87759.19497 110004.9416 39782.65734 98069.2393 86217.6234 80425.46977 101977.8344 76188.63577 70174.90422 0.951184041 1.250578051 1.567582355 0.566907184 1.397497302 1.228610489 1.146071671 1.453195206 1.085696327 1 16.09866757 ITKPGS(ph)IDSNNQLFAPGGR ddPTM_HeLa_A486_30min_R1 2 ITKPGSIDSNNQLFAPGGR 19 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 ITKPGS(1)IDSNNQLFAPGGR;IT(0.006)KPGS(0.994)IDSNNQLFAPGGR ; 240.71 6.23E-46 796170000 487040 544800 228380 240170 466510 604360 721750 802130 410710 647530 TRUE FALSE FALSE 452901.0111 501628.0639 316814.8522 559127.8975 407995.9658 529800.2079 541160.5161 619502.5094 446310.6735 485384.2733 0.933077226 1.033465836 0.652709347 1.151928334 0.840562804 1.091506744 1.114911516 1.276313518 0.919499658 1 18.88876784 -6.313636971 10.28366072 1.100039199 0.926335812 0.216731522 0.147854719 0.995722334 193.1613323 0.049862079 0.043997487 4.86E-07 6.313636971 -0.173703386 ITKPGSIDSNNQLFAPGGRLS(ph)WGK ddPTM_HeLa_A486_30min_R1 2 ITKPGSIDSNNQLFAPGGRLSWGK 24 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 ITKPGSIDSNNQLFAPGGRLS(1)WGK;ITKPGSIDSNNQLFAPGGRLS(1)WGK ; 196.45 4.74E-22 3751400000 538770 595400 345310 336910 562170 637490 943780 802160 517470 934550 TRUE FALSE FALSE 501005.0052 548218.3356 479023.2797 784343.5065 491657.3966 558842.9653 707636.2617 619525.679 562324.7162 700532.5971 0.715177291 0.782573627 0.683798701 1.119638843 0.701833717 0.79774013 1.010140377 0.884363813 0.802710279 1 19.41809266 -1.782327443 0.243234904 0.936031896 3.63E-40 0.212140896 0.125306969 59.4629536 1.115774203 0.17151657 20.88795251 0.016507167 1.782327443 -0.936031896 ITLDNAYMEK ddPTM_HeLa_A485_30min_R1 2 ITLDNAYMEK 10 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 201.84 5.04E-14 122104000 174694 181533 145647 193106 248230 219700 271660 280580 181964 276400 FALSE FALSE TRUE 213554.0776 202761.7052 199527.8862 203654.8918 223515.3496 231203.1523 213617.6217 211767.3151 218482.5057 207498.5668 1.029183386 0.977171594 0.961586816 0.981476137 1.077189848 1.114239755 1.029489625 1.020572423 1.052935011 1 17.66274185 -5.749978778 24.97365532 1.052379089 0.984786568 0.444700855 0.033615534 200.1420915 436124.982 0.010494627 0.013429376 1.78E-06 5.749978778 -0.067592522 ITLET(ph)DEDMVT(ph)EIRLK ddPTM_HeLa_A485_30min_R1 1 ITLETDEDMVTEIRLK 16 1 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 2 0 IT(0.402)LET(0.598)DEDMVT(1)EIRLK 41.967 0.029033 107780000 192820 268930 309110 115230 315490 274270 250980 258000 235790 133730 TRUE FALSE FALSE 235712.1438 300379.0241 423462.6521 121524.7231 284078.7078 288630.3531 197356.0727 194725.0955 283110.8902 100393.5721 2.347880833 2.992014506 4.218025549 1.210483107 2.829650364 2.874988378 1.965823792 1.939617162 2.820010128 1 16.61530738 -9.615770877 0.192261866 2.45E-11 3.143432352 0.302958266 0.747518612 19.9856946 1.016088119 14.89323541 2.699562639 2.42E-10 9.615770877 3.143432352 ITLPVDFVTADKFDENAK ddPTM_HeLa_A486_30min_R1 2 ITLPVDFVTADKFDENAK 18 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 208.13 2.20E-25 222980000 209428 194477 94158.1 134926.3 299671 268183 307656 326416 184783 349841 FALSE FALSE TRUE 194748.1787 179065.9342 130618.638 314115.2452 262083.4689 235097.3081 230677.2147 252098.2024 200800.1392 262238.5365 0.742637529 0.68283608 0.498090935 1.197822598 0.999408677 0.896501755 0.879646515 0.96133164 0.765715603 1 18.00052018 -5.249793303 24.99944913 0.951590378 0.645352975 0.598217078 0.118604737 546.1192305 1172296.818 0.033080017 0.056680094 5.63E-06 5.249793303 -0.306237403 ITNFFIDNILR ddPTM_HeLa_A486_30min_R1 1 ITNFFIDNILR 11 0 P19622 P19622 EN2 Homeobox protein engrailed-2 0 0 89.886 0.037315 46510000 62490 134350 129490 42482 175790 131390 142460 149650 110700 82774 FALSE FALSE TRUE 58109.7737 123703.6167 179631.9959 98900.24292 153740.779 115180.4377 106815.0012 115577.9618 120295.5651 62046.85163 0.936546693 1.993713032 2.895102509 1.593960698 2.477817568 1.856346207 1.721521695 1.862753045 1.938785965 1 15.92107039 -9.557110842 0.550619322 0.843944604 1.97978598 0.237174236 0.490123931 16.06992169 3.916937157 5.290433535 0.217982475 2.77E-10 9.557110842 1.135841375 ITNYGIEK ddPTM_HeLa_A485_30min_R1 1 ITNYGIEK 8 0 O60938 O60938 KERA Keratocan 0 0 95.352 0.037813 2500400000 3616300 2816300 4002400 5722600 8778400 3704700 6733600 6237100 4478500 8136900 FALSE FALSE TRUE 4420733.459 3145641.786 5483054.314 6035211.148 7904391.673 3898672.363 5294911.352 4707441.446 5377293.871 6108520.579 0.723699528 0.514959677 0.89760757 0.987998824 1.293994441 0.63823512 0.866807484 0.770635277 0.880293977 1 22.54239159 -4.777901601 22.84264111 0.913014107 0.619329859 0.336386543 0.167134583 89.11841707 123660.2042 0.045497525 0.095304669 1.67E-05 4.777901601 -0.293684248 ITPENLPQILLQLK ddPTM_HeLa_A485_30min_R1 2 ITPENLPQILLQLK 14 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 ; ; 218.01 2.18E-21 17654800 23143.3 22262.7 20515 26191.3 28052 20800.8 29538 25224.8 21028.6 37172 FALSE FALSE TRUE 28291.44724 24866.12911 28104.3522 27622.0644 25259.04438 21889.89772 23226.965 19038.37825 25248.84713 27905.7045 1.013823078 0.891076916 1.007118534 0.989835766 0.905157022 0.784423763 0.832337524 0.682239656 0.904791604 1 14.76827245 -6.024634878 3.86501667 0.821007556 0.970746788 0.352871946 0.083589952 0.217565341 7.112748191 0.026594 0.028206532 9.45E-07 6.024634878 0.149739232 ITPENLPQILLQLK ddPTM_HeLa_A486_30min_R1 2 ITPENLPQILLQLK 14 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 ; ; 238.98 8.94E-30 20470600 24453 32424 20554.7 10648.5 32170 28278 33995 34466 26952 33909 FALSE FALSE TRUE 22738.97098 29854.60415 28514.03031 24790.24615 28134.93863 24789.34787 25489.09144 26618.84419 29288.22106 25417.96569 0.894602316 1.174547346 1.121806153 0.9753041 1.106891833 0.97526876 1.002798247 1.047245264 1.15226456 1 14.63356095 -11.24452799 2.289892052 0.812633908 1.051648452 0.030136499 0.08481345 11886811.93 3250122.289 11431452 0.02041242 5.69E-12 11.24452799 0.239014544 ITPHTS(ph)PAPR ddPTM_HeLa_A485_30min_R1 2 ITPHTSPAPR 10 0 A0A0C4DFZ9;Q58A45-2;Q58A45-4;Q58A45-3;Q58A45 A0A0C4DFZ9 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 1 0 IT(0.001)PHT(0.158)S(0.841)PAPR;ITPHT(0.024)S(0.976)PAPR ; 107.97 0.00061842 792480000 175888 252680 242020 179999 302650 255200 271850 298910 210960 251380 TRUE FALSE FALSE 215013.6788 282228.728 331553.2693 189831.8896 272517.1033 268561.8774 213767.0267 225601.8538 253297.737 188715.5923 1.139353014 1.495524162 1.756893881 1.005915236 1.444062465 1.423103805 1.13274703 1.195459533 1.342219442 1 17.5258541 -8.259397899 0.290290824 0.942940929 1.43433403 0.209853132 0.203760205 4.301348348 0.934957608 0.70359838 0.322144617 5.50E-09 8.259397899 0.491393101 ITPHTS(ph)PAPR ddPTM_HeLa_A486_30min_R1 2 ITPHTSPAPR 10 0 A0A0C4DFZ9;Q58A45-2;Q58A45-4;Q58A45-3;Q58A45 A0A0C4DFZ9 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 1 0 ITPHT(0.003)S(0.997)PAPR;ITPHT(0.013)S(0.987)PAPR ; 130.1 6.00E-05 912750000 281160 363210 318470 108611 409070 308720 377070 351920 289420 324200 TRUE FALSE FALSE 261452.1359 334427.9168 441790.1129 252851.8969 357760.6262 270633.2652 282723.0978 271795.4984 314507.1586 243018.2098 1.075854094 1.376143446 1.817930077 1.040464816 1.472155632 1.113633688 1.163382357 1.118416182 1.294171161 1 17.8907049 -6.273914434 24.22669842 1.146913029 1.365676808 0.208182658 0.212414594 858.6686005 1667537.925 0.074230361 0.065932708 5.32E-07 6.273914434 0.218763779 ITPLSLQTQGS(ph)SHETLNIVEEK ddPTM_HeLa_A485_30min_R1 2 ITPLSLQTQGSSHETLNIVEEK 22 0 O43491;E9PMV8;Q6R5J7 O43491 EPB41L2 Band 4.1-like protein 2 1 0 ITPLSLQT(0.001)QGS(0.521)S(0.478)HETLNIVEEK;IT(0.001)PLS(0.028)LQT(0.025)QGS(0.471)S(0.471)HET(0.005)LNIVEEK ; 136.53 5.88E-07 847770000 44563 53661 54596 39605 69560 57838 78072 80031 55884 82310 TRUE FALSE FALSE 54475.88561 59936.18716 74793.33233 41768.52086 62634.36216 60866.30825 61391.27941 60403.27177 67099.4062 61791.6318 0.881606198 0.969972558 1.210411995 0.675957563 1.01363826 0.985025099 0.993520929 0.977531585 1.085897948 1 15.91512385 -7.060304134 1.248097362 1.031115167 0.955403346 0.058655542 0.125856814 1.71700589 4.966862793 0.097440126 0.043151266 8.70E-08 7.060304134 -0.075711821 ITPLSLQTQGSS(ph)HETLNIVEEK ddPTM_HeLa_A485_30min_R1 1 ITPLSLQTQGSSHETLNIVEEK 22 0 O43491;E9PMV8;Q6R5J7 O43491 EPB41L2 Band 4.1-like protein 2 1 0 ITPLSLQTQGS(0.011)S(0.989)HETLNIVEEK 245.49 4.39E-47 1352000000 148150 157480 124650 148300 187460 196040 222080 245910 164720 275320 TRUE FALSE FALSE 181105.4564 175895.9161 170763.2221 156401.2535 168795.8242 206304.3513 174630.7938 185600.1869 197777.7931 206687.7909 0.876227162 0.851022285 0.826189207 0.756702913 0.816670513 0.998144837 0.844901351 0.897973635 0.956891514 1 17.65709365 -6.236177675 24.85407601 0.927288064 0.823019467 0.542040589 0.051859849 629.2249983 619071.9856 0.017492373 0.017485813 5.81E-07 6.236177675 -0.104268597 ITPLSLQTQGSS(ph)HETLNIVEEK ddPTM_HeLa_A486_30min_R1 5 ITPLSLQTQGSSHETLNIVEEK 22 0 O43491;E9PMV8;Q6R5J7 O43491 EPB41L2 Band 4.1-like protein 2 1 0 IT(0.009)PLS(0.02)LQT(0.017)QGS(0.4)S(0.549)HET(0.005)LNIVEEK;ITPLSLQTQGS(0.063)S(0.936)HET(0.001)LNIVEEK;ITPLSLQTQGS(0.035)S(0.965)HETLNIVEEK;ITPLSLQTQGS(0.001)S(0.999)HETLNIVEEK;ITPLSLQTQGS(0.381)S(0.619)HETLNIVEEK ;;;; 313.19 1.97E-102 6428172000 990998 1056491 658398 99378 1048457 991485 1134859 1099116 916957 980572 TRUE FALSE FALSE 921534.1577 972770.8055 913347.3381 231357.0063 916949.7466 869165.6614 850905.2749 848871.2803 996439.5711 735030.3887 1.253736134 1.323442976 1.242598064 0.314758423 1.247499097 1.182489425 1.157646388 1.154879163 1.355644047 1 19.48744437 ITPPAAKPGS(ph)PQAK ddPTM_HeLa_A485_30min_R1 4 ITPPAAKPGSPQAK 14 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK ;;; 190.18 1.42E-16 2269250000 1723670 1308060 851420 2575810 1897730 1630200 2754000 2736290 1277540 3101780 TRUE FALSE FALSE 2107094.445 1461026.238 1166395.689 2716519.978 1708785.338 1715554.751 2165585.402 2065210.587 1533930.56 2328563.33 0.904890332 0.627436763 0.500907866 1.166607729 0.733836746 0.736743867 0.930009235 0.886903337 0.658745476 1 21.15100869 -14 0.110468636 1.596027124 0.687380369 0.092070922 0.179604537 417.7602583 3.059647262 57.64742394 2.262325793 1.00E-14 14 -0.908646755 ITPPAAKPGS(ph)PQAK ddPTM_HeLa_A486_30min_R1 4 ITPPAAKPGSPQAK 14 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK ;;; 167.99 2.39E-12 13751460000 11821600 10975380 4182700 5819720 9558420 12826450 15500500 15081030 7925950 18629120 TRUE FALSE FALSE 10992966.89 10105650.92 5802353.457 13548602.27 8359513.835 11244053.01 11622110.95 11647408.69 8612977.728 13964267.1 0.787221185 0.723679291 0.415514356 0.970233681 0.59863606 0.8052018 0.83227504 0.834086644 0.616786951 1 23.73523652 -13.99999999 0.17460965 2.040692355 0.675197606 0.221805693 0.148087747 199.6756259 1.901415893 72.24833845 0.487308901 1.00E-14 13.99999999 -1.365494749 ITS(ph)PLMEPSSIEK ddPTM_HeLa_A485_30min_R1 1 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 IT(0.045)S(0.955)PLMEPSSIEK 59.607 0.031274 64459000 179970 170080 166170 201340 235670 194820 259670 230620 168680 264700 TRUE FALSE FALSE 220003.7056 189969.3765 227643.1979 212338.6944 212205.8673 205020.474 204189.3832 174060.0834 202532.5288 198715.1614 1.107130951 0.955988336 1.145575387 1.068558095 1.067889666 1.031730405 1.027548083 0.875927544 1.019210247 1 17.60034243 -7.039094052 7.475374392 0.958582628 1.05968209 0.360800716 0.057913046 0.260417301 42.6996398 0.025840704 0.015163984 9.14E-08 7.039094052 0.101099462 ITS(ph)PLMEPSSIEK ddPTM_HeLa_A486_30min_R1 3 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 IT(0.023)S(0.977)PLMEPSSIEK;IT(0.272)S(0.728)PLMEPSSIEK;IT(0.003)S(0.997)PLMEPSSIEK ;; 188.09 2.47E-17 501680000 1183520 1304340 793190 553818 1344040 1455500 1671920 1577000 1045980 1380530 TRUE FALSE FALSE 1100561.36 1200979.348 1100334.41 1289316.292 1175457.971 1275935.208 1253587.932 1217951.526 1136646.389 1034836.302 1.063512516 1.160550075 1.063293207 1.245913281 1.135887838 1.232982652 1.211387665 1.176950908 1.098382794 1 19.98097114 -4.26024655 22.98350507 1.157576903 1.06351244 0.089515562 0.073799314 69.51335534 1338845.441 0.017498042 0.103694073 5.49E-05 4.26024655 -0.094064464 ITS(ph)PNIR ddPTM_HeLa_A486_30min_R1 2 ITSPNIR 7 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 IT(0.092)S(0.908)PNIR;IT(0.125)S(0.875)PNIR ; 93.598 0.0045661 123890000 368930 445510 337560 129624 435730 392890 427720 414270 377950 398080 TRUE FALSE FALSE 343069.9122 410206.1651 468272.2722 301771.2228 381076.6804 344419.2264 320699.932 319949.7645 410711.0103 298398.1769 1.149705121 1.374693938 1.569286639 1.011303842 1.277074426 1.154226979 1.074738242 1.07222426 1.376385789 1 18.1868792 -5.272882015 24.99886046 1.144838526 1.365575115 0.340268363 0.144349105 831.085432 1815680.63 0.040007419 0.059929417 5.33E-06 5.272882015 0.220736589 ITSIS(ph)PTPEPPAALEDNPDAWGDGSPR ddPTM_HeLa_A485_30min_R1 1 ITSISPTPEPPAALEDNPDAWGDGSPR 27 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18;G3V5H0 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 IT(0.04)S(0.175)IS(0.775)PT(0.01)PEPPAALEDNPDAWGDGSPR 136.34 2.07E-06 88014000 22866 42593 47110 34856 51500 45070 52708 54610 40848 53346 TRUE FALSE FALSE 27952.46281 47573.88084 64537.94941 36760.09502 46372.47917 47429.79551 41446.50522 41216.81187 49045.81892 40047.82396 0.69797707 1.187926737 1.611522001 0.917904929 1.157927562 1.184328905 1.034925275 1.029189799 1.224681245 1 15.28943623 -6.762215835 24.99994549 1.074631565 1.143092855 0.010393572 0.224481718 123.4156242 3973462.414 0.091770711 0.066053962 1.73E-07 6.762215835 0.06846129 ITSIS(ph)PTPEPPAALEDNPDAWGDGSPR ddPTM_HeLa_A486_30min_R1 1 ITSISPTPEPPAALEDNPDAWGDGSPR 27 0 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18;G3V5H0 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 IT(0.002)S(0.007)IS(0.94)PT(0.051)PEPPAALEDNPDAWGDGSPR 164.03 7.66E-14 84688000 41158 54247 41450 15880 56185 42752 52108 44221 45050 60986 TRUE FALSE FALSE 38273.03674 49948.27016 57500.55007 36969.44253 49137.7534 37477.69291 39070.02726 34152.84364 48954.97027 45714.70865 0.837214933 1.092608301 1.257812896 0.808699074 1.074878411 0.819816948 0.854648939 0.747086543 1.070880067 1 15.4803708 -5.286050705 24.87446322 0.901019204 1.065551753 0.192544612 0.141305826 1060.752165 1072091.087 0.03945527 0.058552457 5.18E-06 5.286050705 0.164532549 ITSLSSS(ph)LDTSLDFSK ddPTM_HeLa_A486_30min_R1 1 ITSLSSSLDTSLDFSK 16 0 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 ITSLS(0.013)S(0.102)S(0.874)LDT(0.004)S(0.006)LDFSK 85.845 0.001312 116040000 171830 191920 125900 89595 183020 218230 209070 192270 170370 220410 TRUE FALSE FALSE 159785.6043 176711.5602 174651.8517 208581.6879 160063.925 191307.0014 156758.4747 148494.3182 185137.8088 165217.9014 0.967120409 1.069566668 1.05710005 1.262464213 0.968804976 1.157907223 0.948798365 0.898778625 1.120567488 1 17.33401049 -6.776821267 24.99842058 0.983600997 1.082128489 0.166430354 0.0962037 409.6060527 665679.9598 0.039309036 0.026613982 1.67E-07 6.776821267 0.098527492 ITVGNDHFCVS(ph)TPER ddPTM_HeLa_A486_30min_R1 2 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.809)T(0.191)PER;ITVGNDHFCVS(0.8)T(0.2)PER ; 107.41 0.00020473 263387000 278700 363060 296499 101132 406700 320006 347109 366853 321867 307182 TRUE FALSE FALSE 259164.5692 334289.8034 411311.3533 235440.4069 355687.8937 280526.9133 260258.6569 283328.5802 349766.6907 230261.6278 1.12552218 1.451782507 1.786278319 1.022490847 1.544711974 1.218296405 1.130273678 1.230463725 1.518996865 1 17.81291449 -6.309003091 24.6191236 1.228426744 1.391828377 0.113709244 0.231568227 825.7727622 427419.6922 0.080623826 0.071103662 4.91E-07 6.309003091 0.163401634 ITVGNDHFCVS(ph)TPERR ddPTM_HeLa_A485_30min_R1 2 ITVGNDHFCVSTPERR 16 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.605)T(0.395)PERR;ITVGNDHFCVS(0.5)T(0.5)PERR ; 113.51 0.00012634 275360000 165679 228534 208121 183995 285490 194064 250520 252890 190229 217465 TRUE FALSE FALSE 202533.722 255259.0633 285113.6185 194046.181 257065.6132 204224.891 196994.3554 190868.331 228406.2154 163254.9776 1.24059753 1.563560677 1.746431396 1.188608052 1.574626495 1.250956595 1.206666763 1.169142489 1.399076578 1 17.31676745 -6.38063317 5.569015563 1.210905076 1.468236697 0.349836962 0.176038096 0.277606529 11.60106294 0.061833164 0.054220505 4.16E-07 6.38063317 0.257331621 ITVGNDHFCVS(ph)TPERR ddPTM_HeLa_A486_30min_R1 2 ITVGNDHFCVSTPERR 16 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.5)T(0.5)PERR;ITVGNDHFCVS(0.5)T(0.5)PERR ; 113.17 0.00013022 262970000 153692 219232 136614 75341 195082 171441 183365 166492 160778 180506 TRUE FALSE FALSE 142918.9845 201859.2579 189514.5994 175397.6555 170612.9965 150290.3525 137485.1376 128585.4061 174714.3665 135306.1227 1.056263986 1.491870832 1.4006358 1.296302429 1.260940696 1.110743176 1.016104333 0.950329546 1.29125248 1 17.0458676 -6.201794507 2.220556162 1.059551057 1.329756832 0.424398609 0.133571821 0.28714697 2.780339151 0.050300628 0.048243781 6.28E-07 6.201794507 0.270205775 ITVGNDHFCVST(ph)PER ddPTM_HeLa_A485_30min_R1 4 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.149)T(0.851)PER;ITVGNDHFCVS(0.187)T(0.813)PER;ITVGNDHFCVS(0.215)T(0.785)PER;ITVGNDHFCVS(0.221)T(0.779)PER ;;; 139.11 5.05E-06 563646000 476518 548348 612641 576667 783600 570783 595558 660455 551285 676092 TRUE FALSE FALSE 582517.7851 612472.5286 839282.4 608168.858 705582.0326 600668.3153 468312.168 498477.3757 661922.8428 507554.707 1.147694578 1.206712341 1.653580173 1.198233116 1.390159569 1.183455314 0.922683135 0.982115561 1.304140881 1 18.95320381 -6.513461438 5.56404418 1.049814426 1.322433325 0.377094345 0.161778483 0.182377741 19.49921831 0.061063467 0.050161242 3.07E-07 6.513461438 0.2726189 ITVGNDHFCVST(ph)PER ddPTM_HeLa_A486_30min_R1 2 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.049)T(0.951)PER;ITVGNDHFCVS(0.25)T(0.75)PER ; 104.45 0.0004156 337642000 245234 377331 304889 144181 438730 377747 462798 431212 329457 362327 TRUE FALSE FALSE 228044.363 347429.9173 422950.186 335660.6545 383700.3924 331144.4158 347001.0454 333034.4409 358014.598 271597.9608 0.839639452 1.279206649 1.55726569 1.23587325 1.412751374 1.219244853 1.27762758 1.22620376 1.31817852 1 18.05111312 -10.39300669 3.399480381 0.997635329 1.273710192 0.170807161 0.172287996 59664879.34 107890830.6 1456715.541 0.042772804 4.05E-11 10.39300669 0.276074864 ITVGNDHFCVST(ph)PERR ddPTM_HeLa_A485_30min_R1 2 ITVGNDHFCVSTPERR 16 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.25)T(0.75)PERR;ITVGNDHFCVS(0.192)T(0.808)PERR ; 133.16 9.97E-06 310180000 201766 244010 235440 189343 293050 229640 259400 280530 209720 232660 TRUE FALSE FALSE 246648.1506 272544.8469 322539.0535 199686.3286 263872.913 241663.5953 203977.0709 211729.5776 251808.8803 174662.1438 1.412144299 1.560411667 1.846645452 1.143271944 1.510761905 1.38360603 1.167837898 1.212223628 1.441691227 1 17.41420743 -6.762794667 0.1740835 0.884205263 1.798830213 0.399554457 0.180796444 5.165992577 0.620212615 1.060862239 1.691599955 1.73E-07 6.762794667 0.91462495 ITVGNDHFCVST(ph)PERR ddPTM_HeLa_A486_30min_R1 1 ITVGNDHFCVSTPERR 16 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.045)T(0.955)PERR 144.57 6.88E-08 130620000 102180 137290 116570 32522 160140 122920 124920 140260 122620 126040 TRUE FALSE FALSE 95017.70966 126410.6404 161709.0259 75712.85957 140053.748 107755.3802 93663.69473 108325.8599 133248.8003 94478.76362 1.005704415 1.33797941 1.711591258 0.801374369 1.482383369 1.140524876 0.991372994 1.146563055 1.410357156 1 16.52770246 -6.457814169 24.99787564 1.137378652 1.274547662 0.06084627 0.254791717 632.4653594 242992.9891 0.088717171 0.078241135 3.48E-07 6.457814169 0.137169009 ITVNGDS(ph)SAEAEELANEI ddPTM_HeLa_A485_30min_R1 1 ITVNGDSSAEAEELANEI 18 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 "N-alpha-acetyltransferase 15, NatA auxiliary subunit" 1 0 IT(0.176)VNGDS(0.412)S(0.412)AEAEELANEI 114.69 7.51E-05 103130000 90476 88816 88467 87857 96467 80611 112150 91543 79433 109110 TRUE FALSE FALSE 110602.0741 99202.2586 121194.6247 92656.40544 86862.40676 84831.66731 88188.23632 69091.93572 95374.4745 81910.88502 1.350273215 1.211099826 1.479591201 1.1311855 1.060450107 1.035658048 1.076636351 0.843501272 1.164368746 1 16.32176756 -5.48153356 4.262474653 1.028295085 1.333455187 0.678217568 0.097228618 0.122628563 4.866525651 0.027367761 0.039873636 3.30E-06 5.48153356 0.305160102 ITVNGDS(ph)SAEAEELANEI ddPTM_HeLa_A486_30min_R1 1 ITVNGDSSAEAEELANEI 18 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 "N-alpha-acetyltransferase 15, NatA auxiliary subunit" 1 0 IT(0.116)VNGDS(0.442)S(0.442)AEAEELANEI 90.367 0.00075242 46215000 56249 72496 49482 22141 67768 62510 70527 57650 60675 62553 TRUE FALSE FALSE 52306.23557 66751.15293 68642.75557 51545.36694 59267.90553 54798.15176 52880.39864 44524.35349 65934.35785 46889.32165 1.115525534 1.423589649 1.463931513 1.099298628 1.263995798 1.168670175 1.127770605 0.949562756 1.406170009 1 15.51697179 -5.274880469 24.94352089 1.148183464 1.343272979 0.256250832 0.147472832 963.1492177 1787378.032 0.040359025 0.060247587 5.31E-06 5.274880469 0.195089515 ITVQAS(ph)PGLDR ddPTM_HeLa_A486_30min_R1 1 ITVQASPGLDR 11 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 ITVQAS(1)PGLDR 141.87 1.14E-06 150320000 209590 254800 230660 107130 293520 223040 249370 271730 217690 233510 TRUE FALSE FALSE 194898.8233 234608.72 319977.7293 249404.0541 256703.9846 195523.5925 186974.9884 209863.0108 236559.5445 175037.5761 1.113468477 1.34033346 1.828051647 1.424860076 1.46656501 1.11703782 1.068199141 1.198959763 1.351478635 1 17.41730514 -6.25882332 24.43529195 1.154636555 1.450726746 0.374381555 0.185130428 196.3109431 1833645.66 0.065708975 0.062844456 5.51E-07 6.25882332 0.296090192 ITVQAS(ph)PNLDK ddPTM_HeLa_A485_30min_R1 1 ITVQASPNLDK 11 0 Q5TCX8;Q5TCX8-2 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 1 0 ITVQAS(1)PNLDK 109.1 0.00049736 0 138800 137160 85080 149290 136310 137870 163180 173290 99052 183210 TRUE FALSE FALSE 169675.5811 153199.6689 116554.6325 157445.3347 122738.4978 145088.66 128315.2599 130790.3558 118930.8278 137539.1187 1.233653252 1.113862516 0.847428961 1.144731304 0.892389736 1.054890139 0.93293647 0.950932048 0.864705467 1 17.06948248 -4.552872686 5.747833846 0.965779409 1.207492318 0.518667484 0.085383043 0.111457608 10.58856592 0.020575474 0.059744679 2.80E-05 4.552872686 0.241712909 ITVQAS(ph)PNLDK ddPTM_HeLa_A486_30min_R1 1 ITVQASPNLDK 11 0 Q5TCX8;Q5TCX8-2 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 1 0 ITVQAS(1)PNLDK 88.075 0.0030683 232440000 214250 218070 135800 116600 229960 236040 277870 264000 175040 318020 TRUE FALSE FALSE 199232.1814 200789.339 188385.3969 271450.6926 201116.2725 206919.7847 208343.987 203892.9631 190212.6081 238385.722 0.835755513 0.842287606 0.790254531 1.138703654 0.843659053 0.868004102 0.873978463 0.855306943 0.797919466 1 17.8629383 -4.853837979 0.008563833 1.739279146 1.85E-05 0.052753442 0.098005035 35272.92738 57.65439756 5561.643483 6155.781038 1.40E-05 4.853837979 -1.739260614 IVADKDYSVTANSK ddPTM_HeLa_A485_30min_R1 2 IVADKDYSVTANSK 14 1 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ; ; 140.96 7.71E-06 173251000 99843 103687 86201 112791 165908 128965 191729 181279 116048 237810 FALSE FALSE TRUE 122052.7309 115812.2927 118090.337 118952.4867 149389.617 135717.408 150764.5329 136820.041 139337.7691 178528.3436 0.683660244 0.648705356 0.661465483 0.666294687 0.836783751 0.760200903 0.844485138 0.766377138 0.780479818 1 17.44579361 -14 0.039949138 2.279888235 3.26E-07 0.782377106 0.048381956 391.158606 1.164667462 59.83763408 17.98804374 1.00E-14 14 -2.279887909 IVADKDYSVTANSK ddPTM_HeLa_A486_30min_R1 1 IVADKDYSVTANSK 14 1 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 181.97 1.36E-10 41051000 63527 62306 38291 25232 67967 72032 86598 81770 57686 88282 FALSE FALSE TRUE 59074.08535 57368.64565 53118.30067 58741.37115 59441.94509 63145.42421 64930.26446 63152.75603 62686.26893 66175.61258 0.892686642 0.866915219 0.802686951 0.887658895 0.898245483 0.954209893 0.981181162 0.954320686 0.947271457 1 16.01401202 -6.063045234 1.767615959 0.967797794 0.856428567 0.788011165 0.026069301 0.165122678 1.034185773 0.010447976 0.011007613 8.65E-07 6.063045234 -0.111369227 IVAHAVEVPAVQS(ph)PR ddPTM_HeLa_A485_30min_R1 4 IVAHAVEVPAVQSPR 15 0 Q96FF9;B5MBX0;H0YCL8 Q96FF9 CDCA5 Sororin 1 0 IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR ;;; 163.11 4.65E-12 2704910000 1277330 1561400 1604820 1195760 1752870 1539680 1611360 1764410 1326780 1572310 TRUE FALSE FALSE 1561467.652 1743992.148 2198509.7 1261081.341 1578348.108 1620295.264 1267079.772 1331685.681 1593052.576 1180362.053 1.322871781 1.477506112 1.86257233 1.068385194 1.337172865 1.372710398 1.073467051 1.128201027 1.349630456 1 20.17079802 -5.281752087 24.99972832 1.204177177 1.546635737 0.476229976 0.174613431 717.3075831 882819.783 0.049431319 0.073418807 5.23E-06 5.281752087 0.34245856 IVAHAVEVPAVQS(ph)PR ddPTM_HeLa_A486_30min_R1 4 IVAHAVEVPAVQSPR 15 0 Q96FF9;B5MBX0;H0YCL8 Q96FF9 CDCA5 Sororin 1 0 IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR ;;; 172.37 1.84E-12 2984060000 1838690 2217220 1884560 638182 2222580 1880980 2059440 1955190 1695530 2119890 TRUE FALSE FALSE 1709807.326 2041519.412 2614312.102 1485719.948 1943803.292 1648923.812 1544146.329 1510035.918 1842499.906 1589055.746 1.075989518 1.284737441 1.645198483 0.934970313 1.223244242 1.037675246 0.9717383 0.950272464 1.159493561 1 20.59973831 -5.29304714 24.99987405 1.042296351 1.330251593 0.434109325 0.154649855 617.8953334 488717.4495 0.043920818 0.065152252 5.09E-06 5.29304714 0.287955242 IVATKPLYVALAQR ddPTM_HeLa_A485_30min_R1 2 IVATKPLYVALAQR 14 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YB86 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ; ; 148.57 4.03E-06 98294000 72579 100085 89011 67210 113723 100677 105534 128390 84768 99412 FALSE FALSE TRUE 88723.94816 111789.0701 121939.873 70881.51212 102400.3388 105948.292 82985.79877 96902.15119 101780.1601 74630.41794 1.188844316 1.497902239 1.633916522 0.949767053 1.372099228 1.419639538 1.111956774 1.29842702 1.363789228 1 16.18747615 -13.53775708 0.16730068 2.27E-16 1.396417084 0.204765737 0.185337824 183.0217743 1.973280711 61.81029001 0.721731892 2.90E-14 13.53775708 1.396417084 IVATKPLYVALAQR ddPTM_HeLa_A486_30min_R1 2 IVATKPLYVALAQR 14 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YB86 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ; ; 144.68 5.91E-06 112353000 119240 141856 109485 50908 158982 131907 165672 160778 120447 162000 FALSE FALSE TRUE 110881.8918 130614.8139 151880.5241 118516.3967 139040.9951 115633.6555 124219.1133 124172.3592 130887.4429 121434.1456 0.913103075 1.075602034 1.250723373 0.975972583 1.144990929 0.952233451 1.022933976 1.022548959 1.077847111 1 16.88981462 -6.263388447 24.99933931 1.017010842 1.076859663 0.090584355 0.08950908 454.5869955 5830617.989 0.030844339 0.028551522 5.45E-07 6.263388447 0.059848821 IVDS(ph)PEK ddPTM_HeLa_A485_30min_R1 4 IVDSPEK 7 0 E9PQC4;Q9BZD4 E9PQC4 NUF2 Kinetochore protein Nuf2 1 0 IVDS(1)PEK;IVDS(1)PEK;IVDS(1)PEK;IVDS(1)PEK ;;; 150.35 0.0009135 2604210000 4730800 3585360 3144250 8913900 4851670 3634900 5691200 4354340 3896660 10535500 TRUE FALSE FALSE 5783150.139 4004636.664 4307438.918 9400843.786 4368620.7 3825217.743 4475228.627 3286431.288 4678683.92 7909193.742 0.731193384 0.506326788 0.544611633 1.188596979 0.55234716 0.483641932 0.565826148 0.415520392 0.591550046 1 22.9150992 -10.10698461 5.05682865 1.000009378 0.617521012 0.234970825 0.205682143 2.82E-05 4.99E-06 0.207912786 0.050424721 7.82E-11 10.10698461 -0.382488366 IVDS(ph)PEK ddPTM_HeLa_A486_30min_R1 4 IVDSPEK 7 0 E9PQC4;Q9BZD4 E9PQC4 NUF2 Kinetochore protein Nuf2 1 0 IVDS(1)PEK;IVDS(1)PEK;IVDS(1)PEK;IVDS(1)PEK ;;; 158.57 0.00037236 3495600000 6289860 7293830 3313990 3563760 5125950 8140140 9280100 7863210 5954330 11187600 TRUE FALSE FALSE 5848973.295 6715840.347 4597255.68 8296613.382 4483005.553 7135892.29 6958120.825 6072928.736 6470456.119 8386152.141 0.697456139 0.800825007 0.548196074 0.989323022 0.534572409 0.850913765 0.829715549 0.724161526 0.771564361 1 22.99957757 -13.99999998 0.209980065 2.196925827 0.715023736 0.265745413 0.1282003 194.4433289 1.938372862 97.94448917 0.256972216 1.00E-14 13.99999998 -1.481902092 IVDS(ph)PEKLK ddPTM_HeLa_A485_30min_R1 4 IVDSPEKLK 9 1 E9PQC4;Q9BZD4 E9PQC4 NUF2 Kinetochore protein Nuf2 1 0 IVDS(1)PEKLK;IVDS(1)PEKLK;IVDS(1)PEKLK;IVDS(1)PEKLK ;;; 136.38 8.60E-05 5856890000 9165260 9227890 8011140 15205130 13384350 10347930 15982540 15626680 9199440 21035430 TRUE FALSE FALSE 11204040.47 10307011.46 10974794.06 16035747.75 12051757.12 10889731.61 12567739.76 11794212.23 11045683.23 15791684.43 0.709489891 0.652686008 0.694972984 1.01545518 0.763171096 0.689586451 0.795845422 0.746862203 0.699462003 1 23.91266173 -10.72596886 2.64478003 1.046189379 0.754740383 0.372592993 0.096504173 46457116.31 37084515.73 14157352.9 0.025107088 1.88E-11 10.72596886 -0.291448996 IVDS(ph)PEKLK ddPTM_HeLa_A486_30min_R1 5 IVDSPEKLK 9 1 E9PQC4;Q9BZD4 E9PQC4 NUF2 Kinetochore protein Nuf2 1 0 IVDS(1)PEKLK;IVDS(1)PEKLK;IVDS(1)PEKLK;IVDS(1)PEKLK;IVDS(1)PEKLK ;;;; 143.42 5.39E-05 8140840000 18200600 21306700 14751520 12001080 21447500 20537500 28471800 27270100 17513570 29898300 TRUE FALSE FALSE 16924831.93 19618279.49 20463703.6 27939120.74 18757354.56 18003792.06 21347854.5 21061293.53 19031660.35 22411571.07 0.755182752 0.875363866 0.913086527 1.246638205 0.83694956 0.803325746 0.95253717 0.939750875 0.849189032 1 24.41774045 -4.39943043 2.473474907 0.942087599 0.742122838 0.196763801 0.116576771 0.695021738 6.454856599 0.032061165 0.256076616 3.99E-05 4.39943043 -0.199964761 IVEMS(ph)TSK ddPTM_HeLa_A485_30min_R1 1 IVEMSTSK 8 0 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 1 0 IVEMS(0.922)T(0.072)S(0.006)K 83.438 0.0052415 0 152380 148760 106570 185110 220810 153950 195780 186080 140100 208180 TRUE FALSE FALSE 186276.4053 166156.188 145994.6777 195222.0906 198825.3811 162010.5839 153950.0036 140443.5882 168216.7849 156284.5573 1.191905384 1.063164467 0.934159333 1.249145111 1.272201071 1.036638468 0.98506216 0.898640216 1.076349371 1 17.2538157 -6.509118381 20.58075404 0.98574942 1.13435178 0.351278639 0.098304079 79.0170841 118185.0369 0.038266083 0.032273837 3.10E-07 6.509118381 0.14860236 IVEMSTSK(ac)TGK ddPTM_HeLa_A485_30min_R1 6 IVEMSTSKTGK 11 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 0 1 ;;;;; IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK 267.24 1.89E-37 3226451000 3316280 3250560 3181480 2851410 3498110 4319350 5422350 4718630 2701910 4344820 FALSE TRUE FALSE 4053975.045 3630684.716 4358441.844 3007175.308 3149825.886 4545504.487 4263820.626 3561378.594 3244158.554 3261736.334 1.242888643 1.113114104 1.336233649 0.921955364 0.965689916 1.393584282 1.307224186 1.091865874 0.994610913 1 21.63720873 -7.544075105 5.147660907 1.006569726 1.177595529 0.210175841 0.144115297 0.327006853 24.49820365 0.105274196 0.039872118 2.86E-08 7.544075105 0.171025803 IVEMSTSK(ac)TGK ddPTM_HeLa_A486_30min_R1 6 IVEMSTSKTGK 11 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 0 1 ;;;;; IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK 268.73 1.72E-45 2769733000 3011000 3313580 2318480 1022252 3782100 3305290 3785970 3785730 2803930 3523830 FALSE TRUE FALSE 2799944.449 3050999.853 3216257.547 2379854.318 3307713.751 2897516.926 2838680.262 2923801.921 3046976.91 2641440.032 1.06000682 1.15505172 1.217615206 0.900968521 1.252238821 1.096945943 1.074671478 1.106896952 1.153528709 1 21.33289323 -10.69426192 2.335644602 0.978086625 1.113475332 0.1214507 0.091254345 6979048.448 4945708.665 898895.4363 0.022076367 2.02E-11 10.69426192 0.135388707 IVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_HeLa_A485_30min_R1 3 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 IVEPEVVGES(1)DS(1)EVEGDAWR;IVEPEVVGES(1)DS(1)EVEGDAWR;IVEPEVVGES(1)DS(1)EVEGDAWR ;; 166.29 4.32E-13 5808830000 441701 559810 554600 441680 647810 501841 574610 586550 474340 538820 TRUE FALSE FALSE 539955.8636 625274.9098 759769.6188 465807.86 583311.7618 528116.6188 451839.8794 442697.6928 569535.6871 404502.0902 1.334865447 1.54578907 1.878283542 1.151558598 1.44204882 1.305596761 1.117027304 1.094426218 1.407991951 1 18.62578763 -5.943848287 1.062317267 1.167949183 1.55185596 0.38150422 0.193915739 0.542236411 1.310029334 0.092815154 0.115460818 1.14E-06 5.943848287 0.383906777 IVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_HeLa_A486_30min_R1 3 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 IVEPEVVGES(1)DS(1)EVEGDAWR;IVEPEVVGES(1)DS(1)EVEGDAWR;IVEPEVVGES(1)DS(1)EVEGDAWR ;; 221.41 4.71E-35 2438723000 503514 557594 474035 197488 632333 533410 533591 571984 479006 533377 TRUE FALSE FALSE 468220.2687 513408.2207 657594.0471 459762.0445 553019.8989 467603.2975 400080.888 441755.7295 520526.6258 399815.9275 1.171089585 1.284111476 1.644741997 1.149934289 1.383186264 1.169546447 1.000662706 1.104897777 1.301915682 1 18.60897642 -6.402902361 4.607632846 1.107507155 1.331348957 0.338925781 0.149358498 0.278227518 9.262692494 0.054536691 0.047448181 3.95E-07 6.402902361 0.223841802 IVEPEVVGES(ph)DSEVEGDAWR ddPTM_HeLa_A485_30min_R1 5 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 IVEPEVVGES(0.999)DS(0.001)EVEGDAWR;IVEPEVVGES(0.929)DS(0.071)EVEGDAWR;IVEPEVVGES(0.999)DS(0.001)EVEGDAWR;IVEPEVVGES(0.999)DS(0.001)EVEGDAWR;IVEPEVVGES(0.993)DS(0.007)EVEGDAWR ;;;; 372.43 5.33E-142 1658676000 367796 542363 636363 457091 610907 502733 522517 597094 545353 570419 TRUE FALSE FALSE 449610.9513 605787.6349 871780.155 482060.7239 550082.9541 529055.3225 410876.9744 450655.7603 654800.3448 428224.0411 1.049943273 1.414651156 2.035803858 1.125720832 1.284568126 1.23546385 0.959490675 1.052383138 1.529106921 1 18.70800627 IVEPEVVGES(ph)DSEVEGDAWR ddPTM_HeLa_A486_30min_R1 4 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 IVEPEVVGES(0.999)DS(0.001)EVEGDAWR;IVEPEVVGES(0.916)DS(0.084)EVEGDAWR;IVEPEVVGES(1)DSEVEGDAWR;IVEPEVVGES(0.974)DS(0.026)EVEGDAWR ;;; 346.73 1.46E-127 1517930000 462499 528524 474805 151626 560481 455951 467958 501431 468122 530178 TRUE FALSE FALSE 430080.2084 486641.8334 658662.2117 352992.9908 490180.2467 399700.4014 350869.9588 387266.1075 508699.1919 397417.9779 1.082186092 1.224508856 1.65735384 0.88821596 1.233412362 1.005743131 0.882873897 0.974455432 1.280010518 1 18.60029761 -5.292741852 24.99961352 1.037109122 1.311665823 0.338376739 0.181531751 764.0132354 610174.9189 0.05141803 0.076273582 5.10E-06 5.292741852 0.274556701 IVEVLLMK ddPTM_HeLa_A485_30min_R1 2 IVEVLLMK 8 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BR27;P38159-3;O75526 P38159 RBMX;RBMXL2 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2" 0 0 ; ; 138.9 0.00092232 24511000 39298 45629 38558 36729 51617 46404 50033 58526 39077 53196 FALSE FALSE TRUE 48039.70452 50964.91463 52822.20873 38735.41227 46477.83024 48833.64169 39343.04082 44172.40673 46919.39546 39935.2162 1.20294089 1.276189776 1.322697452 0.969956243 1.16383069 1.222821518 0.985171599 1.106101605 1.174887729 1 15.2853739 -1.000000016 0.163953691 1.009956679 2.043197065 0.299442883 0.098362635 79.01205231 0.831965988 0.28472424 19.84307915 0.099999996 1.000000016 1.033240386 IVEVLLMK ddPTM_HeLa_A486_30min_R1 2 IVEVLLMK 8 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BR27;P38159-3;O75526 P38159 RBMX;RBMXL2 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2" 0 0 ; ; 132.69 0.0021751 25261000 52068 55039 42686 18583.3 60942 51103 56775 54198 45465 57570 FALSE FALSE TRUE 48418.30208 50677.50919 59215.16237 43262.86155 53298.0861 44798.43144 42569.2945 41858.29853 49405.94281 43154.09728 1.121986211 1.174338299 1.372179378 1.002520369 1.235064327 1.038103778 0.986448499 0.969972753 1.144872583 1 15.39720992 -6.33156765 6.542867148 1.022204758 1.181336564 0.382980744 0.097248865 0.26121773 20.10341449 0.03395735 0.029943445 4.66E-07 6.33156765 0.159131806 IVEYS(ph)PPSAPR ddPTM_HeLa_A485_30min_R1 4 IVEYSPPSAPR 11 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 IVEYS(1)PPSAPR;IVEY(0.001)S(0.997)PPS(0.002)APR;IVEY(0.036)S(0.939)PPS(0.024)APR;IVEY(0.02)S(0.93)PPS(0.05)APR ;;; 178.95 2.20E-10 1514870000 908400 1257850 1260750 1179140 1532980 1305020 1467210 1661400 1187760 1588970 TRUE FALSE FALSE 1110470.446 1404944.616 1727153.889 1243553.432 1380351.129 1373348.829 1153728.597 1253939.045 1426132.537 1192869.022 0.930924038 1.177786153 1.447899021 1.042489502 1.157169063 1.151298931 0.967187995 1.051195917 1.195548305 1 20.18600421 -6.600947555 11.91945096 1.057782137 1.162273331 0.109916564 0.134271627 1.375549807 204.049286 0.052591343 0.040724998 2.51E-07 6.600947555 0.104491193 IVEYS(ph)PPSAPR ddPTM_HeLa_A486_30min_R1 3 IVEYSPPSAPR 11 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 IVEYS(1)PPSAPR;IVEYS(0.993)PPS(0.007)APR;IVEYS(1)PPSAPR ;; 162.23 6.91E-08 1221220000 1316210 1563730 1343810 528894 1820750 1380090 1618990 1645640 1288740 1612000 TRUE FALSE FALSE 1223950.476 1439814.34 1864169.22 1231291.961 1592374.557 1209828.528 1213901.578 1270963.696 1400449.021 1208344.708 1.012914997 1.191559272 1.542746212 1.018990651 1.317814815 1.001227977 1.004598746 1.051822123 1.158981383 1 20.20460064 -6.272024648 24.82367063 1.044144467 1.222520778 0.257431546 0.147154305 939.4643737 2203145.083 0.051629839 0.04600788 5.35E-07 6.272024648 0.178376311 IVFSGNLFQHQEDSKK ddPTM_HeLa_A485_30min_R1 1 IVFSGNLFQHQEDSKK 16 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 0 0 158.45 1.81E-10 13802000 29452 26891 25298 36516 43768 36843 54007 51850 32481 56488 FALSE FALSE TRUE 36003.49579 30035.66853 34656.78294 38510.77662 39410.30424 38772.04251 42467.96325 39133.7062 38999.63877 42406.58118 0.849007272 0.708278472 0.817250105 0.908132076 0.929344058 0.914293051 1.001447466 0.922821532 0.919660055 1 15.37200056 -5.278867493 2.389616146 0.944390234 0.77508155 0.724281858 0.043441934 0.146646561 1.642798335 0.012494569 0.022875832 5.26E-06 5.278867493 -0.169308684 IVIGLFGK ddPTM_HeLa_A485_30min_R1 1 IVIGLFGK 8 0 P45877 P45877 PPIC Peptidyl-prolyl cis-trans isomerase C 0 0 99.384 0.023807 18348000 20509 21005 23229 18283 29032 15173 17957 20053 18965 28936 FALSE FALSE TRUE 25071.15629 23461.35203 31822.37374 19281.75399 26141.47214 15967.43482 14120.34025 15134.97031 22771.10154 21722.78773 1.154140832 1.080034125 1.464930475 0.887627971 1.203412401 0.73505459 0.650024317 0.696732413 1.048258715 1 14.40692164 -6.260152069 24.99489634 0.796060419 1.155723897 0.462051224 0.177651186 99.57001038 1933297.379 0.059571689 0.05648591 5.49E-07 6.260152069 0.359663478 IVIGLFGK ddPTM_HeLa_A486_30min_R1 2 IVIGLFGK 8 0 P45877 P45877 PPIC Peptidyl-prolyl cis-trans isomerase C 0 0 ; ; 132.94 0.0021148 39123000 132534 150781 99008 45427 150642 123937 148129 137449 115810 147528 FALSE FALSE TRUE 123244.051 138832.5644 137346.5491 105756.3518 131747.0757 108646.913 111065.5575 106154.8632 125848.504 110586.0286 1.114463125 1.2554259 1.241988259 0.956326519 1.191353713 0.982465095 1.004336252 0.959930152 1.1380145 1 16.7548096 -5.252125582 24.9775158 1.034806829 1.209105786 0.488590831 0.079992567 540.1383782 1448526.781 0.021247958 0.036192042 5.60E-06 5.252125582 0.174298957 IVIQK(ac)YHTVNGHNCEVR ddPTM_HeLa_A486_30min_R1 1 IVIQKYHTVNGHNCEVR 17 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 IVIQK(1)YHTVNGHNCEVR 57.745 0.021194 11590000 6212 9801.4 12480 3064.6 16116 9421.9 7868.6 10242 8248.9 6417.4 FALSE TRUE FALSE 5776.570879 9024.701368 17312.59023 7134.543676 14094.581 8259.521773 5899.793054 7910.120181 8963.921294 4810.44127 1.200840121 1.87606518 3.598960938 1.48313705 2.929997523 1.716998776 1.226455687 1.644364776 1.863430149 1 12.23195353 -6.50798315 23.90319797 1.485040668 2.243608164 0.230742081 0.676725517 602.0941944 966194.2274 0.242029438 0.205917631 3.10E-07 6.50798315 0.758567496 IVLLDS(ph)SLEYK ddPTM_HeLa_A485_30min_R1 1 IVLLDSSLEYK 11 0 B4DUR8;P49368-2;P49368;Q5SZX6 B4DUR8 CCT3 T-complex protein 1 subunit gamma 1 0 IVLLDS(0.838)S(0.162)LEYK 143.42 1.05E-06 14728000 45965 46517 28417 69185 57123 53844 76210 67663 42971 92419 TRUE FALSE FALSE 56189.75567 51956.75851 38929.63083 72964.40136 51435.63355 56663.18858 59927.11092 51068.54316 51594.88555 69380.64415 0.809876535 0.748865323 0.561102182 1.051653559 0.741354223 0.816700238 0.86374394 0.736063261 0.743649561 1 16.08224561 -11.45773032 2.2413922 3.267433193 0.78642674 0.232264948 0.116777358 8157487.941 553668.6636 94460187.07 0.028527068 3.49E-12 11.45773032 -2.481006453 IVLLDS(ph)SLEYK ddPTM_HeLa_A486_30min_R1 1 IVLLDSSLEYK 11 0 B4DUR8;P49368-2;P49368;Q5SZX6 B4DUR8 CCT3 T-complex protein 1 subunit gamma 1 0 IVLLDS(0.5)S(0.5)LEYK 117.23 0.00028758 10205000 52124 57041 37165 32734 60426 59054 76809 69537 49400 82254 TRUE FALSE FALSE 48470.37677 52520.86342 51556.28331 76206.40628 52846.80763 51768.5179 57590.5758 53704.94308 53682.03177 61657.06302 0.786128537 0.851822336 0.83617806 1.235972045 0.857108741 0.839620238 0.934046693 0.871026618 0.870655026 1 15.91197855 -5.038810383 24.99969764 0.938432306 0.825230993 0.19887257 0.109585787 926.0177556 596493.2365 0.030698261 0.053184197 9.15E-06 5.038810383 -0.113201313 IVLPGNFLYCTFYGRPYK ddPTM_HeLa_A485_30min_R1 2 IVLPGNFLYCTFYGRPYK 18 1 Q8NB90-3;Q8NB90-2;Q8NB90 Q8NB90-3 SPATA5 Spermatogenesis-associated protein 5 0 0 ; ; 215.23 9.67E-29 122785000 93317 124620 114773 85741 133444 118207 167600 192152 68053 131929 FALSE FALSE TRUE 114075.0447 139193.225 157232.3088 90424.81372 120157.8468 124396.1357 131790.8908 145026.4207 81710.61288 99041.52827 1.151790029 1.405402636 1.587539202 0.912998974 1.213206711 1.25599976 1.330662936 1.4642991 0.825013651 1 16.59574596 -7.76968812 24.99998766 0.91250666 1.28905028 0.418270608 0.178181685 199.4821106 604559.6302 0.164991193 0.045492169 1.70E-08 7.76968812 0.37654362 IVLPGNFLYCTFYGRPYK ddPTM_HeLa_A486_30min_R1 1 IVLPGNFLYCTFYGRPYK 18 1 Q8NB90-3;Q8NB90-2;Q8NB90 Q8NB90-3 SPATA5 Spermatogenesis-associated protein 5 0 0 207.53 6.24E-23 42068000 31009 44997 39148 15360 54028 42685 58029 49440 40104 54076 FALSE FALSE TRUE 28835.42923 41431.27384 54307.15402 35758.85625 47251.30445 37418.95869 43509.53043 38183.59127 43580.24701 40535.01762 0.711370832 1.022110666 1.339758984 0.882171968 1.165690981 0.92312674 1.073381313 0.941990247 1.075125893 1 15.30688115 -4.270723625 5.536159509 1.050823493 0.700949387 0.393165074 0.125381349 0.132501948 15.85466855 0.029893024 0.173319934 5.36E-05 4.270723625 -0.349874106 IVLYAK ddPTM_HeLa_A486_30min_R1 1 IVLYAK 6 0 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 105.82 0.036732 25629000 90021 94318 72795 28709 109340 91769 100930 104620 82187 101490 FALSE FALSE TRUE 83710.99277 86843.89818 100983.1735 66836.00287 95625.55764 80447.47382 75676.24647 80800.30984 89311.03533 76076.24341 1.10035655 1.141537677 1.327394322 0.878539737 1.256970026 1.057458547 0.994742157 1.062096473 1.173967474 1 16.21515839 -5.246408426 24.98326489 1.068441256 1.184940302 0.220256765 0.1106117 1369.619376 2276470.737 0.029181655 0.050299714 5.67E-06 5.246408426 0.116499046 IVNHWAS(ph)PELR ddPTM_HeLa_A485_30min_R1 5 IVNHWASPELR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR ;;;; 164.88 4.23E-08 4401480000 1985840 2706130 2691000 1916820 3126310 2448260 2706250 3210460 2252820 2472620 TRUE FALSE FALSE 2427583.257 3022588.363 3686512.882 2021531.023 2815043.599 2576447.108 2128037.579 2423089.651 2704940.31 1856241.339 1.307795062 1.628338029 1.986009472 1.089045363 1.51652888 1.38799145 1.1464229 1.305374253 1.4572137 1 20.82395286 -5.276548448 24.98899304 1.294335305 1.639476613 0.377379712 0.215793853 860.8585033 1423777.846 0.060299575 0.089826565 5.29E-06 5.276548448 0.345141308 IVNHWAS(ph)PELR ddPTM_HeLa_A486_30min_R1 7 IVNHWASPELR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR;IVNHWAS(1)PELR ;;;;;; 171.95 2.78E-08 4908440000 2211658.2 2434925.4 2150760 736193 2760830 2054890 2232580 2334740 1894829 2211300 TRUE FALSE FALSE 2056632.381 2241973.043 2983591.871 1713894.509 2414540.958 1801378.564 1673964.87 1803170.669 2059074.303 1657576.087 1.240746894 1.352561165 1.799972801 1.033976372 1.456669758 1.086754677 1.009887198 1.087835837 1.242220083 1 20.66064366 -6.107168602 1.447478254 1.081667017 1.409213804 0.337574141 0.194660207 0.473311339 2.010125168 0.082878648 0.084915456 7.81E-07 6.107168602 0.327546787 IVPASFS(ph)CEAAQTK ddPTM_HeLa_A485_30min_R1 1 IVPASFSCEAAQTK 14 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 IVPAS(0.005)FS(0.994)CEAAQTK 109.14 0.00017005 0 65898 62180 66248 72825 91985 85819 95887 90555 73789 132400 TRUE FALSE FALSE 80556.78275 69451.41011 90755.89201 76803.24535 82826.65042 90312.35014 75399.95913 68346.24427 88597.77547 99395.11664 0.810470227 0.698740667 0.913082001 0.772706426 0.83330704 0.90861959 0.758588165 0.687621752 0.8913695 1 16.60088735 -8.003117212 24.75031908 1.00000001 0.800420075 0.443643786 0.071527981 78.81894541 625820.5052 0.069321656 0.017898775 9.93E-09 8.003117212 -0.199579935 IVPQSQVPNPES(ph)PGK ddPTM_HeLa_A485_30min_R1 1 IVPQSQVPNPESPGK 15 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 IVPQSQVPNPES(1)PGK 227 7.58E-34 175720000 150100 122200 94030 213740 140620 120700 202630 140670 109760 238830 TRUE FALSE FALSE 183489.2272 136490.227 128815.6099 225416.075 126619.3791 127019.6654 159336.4452 106170.4619 131787.8252 179294.0763 1.023398156 0.761264565 0.718459932 1.257242178 0.70621061 0.708443179 0.888687727 0.592158225 0.735037252 1 17.4519683 IVPQSQVPNPES(ph)PGK ddPTM_HeLa_A486_30min_R1 2 IVPQSQVPNPESPGK 15 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 IVPQSQVPNPES(1)PGK;IVPQSQVPNPES(1)PGK ; 231.06 3.14E-34 374900000 314640 324910 150341 147502 264138 347160 420480 375670 234024 527920 TRUE FALSE FALSE 292585.3608 299162.9483 208557.0615 343392.1103 231007.3491 304330.9289 315271.4566 290138.1418 254309.3887 395725.3958 0.73936463 0.755986225 0.527024709 0.867753533 0.583756695 0.769045737 0.796692504 0.733180496 0.642641062 1 18.59414013 -11.06671428 2.415243877 1.414320235 0.714111077 0.443006819 0.096591908 12246052.53 4303483.48 27944405.44 0.023250687 8.58E-12 11.06671428 -0.700209158 IVPVEITISLLKR ddPTM_HeLa_A485_30min_R1 1 IVPVEITISLLKR 13 1 P30085;Q5T0D2;P30085-3 P30085 CMPK1 UMP-CMP kinase 0 0 86.772 0.0019413 0 6217.8 6943.6 6233.4 5532.8 7247.5 6884.1 11076 11838 3083.2 7998.4 FALSE FALSE TRUE 7600.928159 7755.593619 8539.394053 5835.042854 6525.913452 7244.540831 8709.522117 8934.711939 3701.969959 6004.54608 1.265862241 1.291620302 1.422154804 0.971770851 1.086828774 1.206509324 1.450488014 1.487991235 0.616527862 1 12.55183947 -7.763741748 24.99999927 0.808263897 1.265968293 0.531534178 0.174384145 50.71637565 550637.1733 0.151073922 0.046236447 1.72E-08 7.763741748 0.457704396 IVQK(ac)HPHTGDTK ddPTM_HeLa_A485_30min_R1 2 IVQKHPHTGDTK 12 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 1 ; IVQK(1)HPHTGDTK;IVQK(1)HPHTGDTK 183.06 1.08E-09 39851000 15957.4 16464.8 13127.5 16057.3 21618 33703 61610 92149 82879 154507 FALSE TRUE FALSE 19507.06858 18390.21514 17983.90853 16934.46964 19465.63601 35467.63697 48446.52019 69549.31327 99512.05509 115991.2484 0.168177072 0.158548299 0.155045392 0.145997822 0.167819868 0.305778561 0.417673927 0.599608283 0.85792727 1 16.82365643 -7.392001631 0.887894845 1.009765769 0.149536834 0.993588446 0.02414338 0.040821177 0.059481807 0.02289475 0.009239118 4.06E-08 7.392001631 -0.860228935 down IVQK(ac)HPHTGDTK ddPTM_HeLa_A486_30min_R1 2 IVQKHPHTGDTK 12 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 1 ; IVQK(1)HPHTGDTK;IVQK(1)HPHTGDTK 218.5 3.84E-21 98597000 170457 198188 130779 84847 205112 243080 251200 243720 216720 352790 FALSE TRUE FALSE 158508.8445 182482.8611 181420.1312 197528.1039 179384.9404 213091.2611 188347.1031 188230.2764 235505.4641 264449.0877 0.599392669 0.690049123 0.686030467 0.7469419 0.678334503 0.805793141 0.712224439 0.711782665 0.890551244 1 18.01263047 -14 0.095745409 1.949327047 0.50742626 0.792539263 0.0506636 86.70981457 0.569053605 16.32919292 0.970536294 1.00E-14 14 -1.441900788 IVQQIAILMGCAILPHLR ddPTM_HeLa_A485_30min_R1 1 IVQQIAILMGCAILPHLR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 0 80.609 0.0028335 69234000 5856.5 6738 4965.5 5205.7 8521.7 5234.9 7065.2 6622.8 5064.5 9849.2 FALSE FALSE TRUE 7159.25822 7525.950487 6802.445082 5490.074209 7673.249626 5508.991269 5555.662303 4998.547916 6080.898696 7393.975701 0.968255579 1.017848961 0.919998301 0.742506391 1.037770468 0.745064833 0.751376868 0.6760298 0.822412589 1 12.85213459 -6.280882195 24.53965347 0.775753672 0.929971826 0.27208707 0.109542555 793.1737373 1001096.655 0.03805434 0.033612667 5.24E-07 6.280882195 0.154218154 IVRGDQPAASGDS(ph)DDDEPPPLPR ddPTM_HeLa_A485_30min_R1 2 IVRGDQPAASGDSDDDEPPPLPR 23 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 IVRGDQPAASGDS(1)DDDEPPPLPR;IVRGDQPAASGDS(1)DDDEPPPLPR ; 213.84 3.42E-38 654180000 255100 281370 242530 276390 357910 269210 364910 393310 271480 509100 TRUE FALSE FALSE 311846.1149 314273.7739 332251.9395 291488.4858 322275.2237 283305.4193 286943.9975 296850.1058 325963.5458 382190.7393 0.815943671 0.822295628 0.869335401 0.762678045 0.843231378 0.741267096 0.750787416 0.776706695 0.852881853 1 18.5439333 -8.109478223 3.84125044 0.999947528 0.798250807 0.709570934 0.039049046 0.291761849 8.776151265 0.039914179 0.010501544 7.77E-09 8.109478223 -0.201696721 IVRGDQPAASGDS(ph)DDDEPPPLPR ddPTM_HeLa_A486_30min_R1 2 IVRGDQPAASGDSDDDEPPPLPR 23 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 IVRGDQPAASGDS(1)DDDEPPPLPR;IVRGDQPAASGDS(1)DDDEPPPLPR ; 253.49 2.69E-61 604780000 274970 315450 348430 145084 510150 361860 370760 369770 311140 360580 TRUE FALSE FALSE 255696.0229 290452.5932 483351.4273 337762.8841 446162.23 317217.3923 277991.9265 285581.443 338109.8657 270288.421 0.946011753 1.074602427 1.788280184 1.249638748 1.650689395 1.173625534 1.028501056 1.056580382 1.250922494 1 18.04414018 -6.509072772 24.22576356 1.090479859 1.353225201 0.207549194 0.238926845 720.0593953 1263515.592 0.089254431 0.07547179 3.10E-07 6.509072772 0.262745342 IVSGS(ph)PISTPSPS(ph)PLPR ddPTM_HeLa_A486_30min_R1 2 IVSGSPISTPSPSPLPR 17 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 2 0 IVS(0.01)GS(0.988)PIS(0.133)T(0.096)PS(0.002)PS(0.772)PLPR;IVS(0.024)GS(0.972)PIS(0.004)T(0.004)PS(0.001)PS(0.995)PLPR ; 143.39 1.74E-07 102565000 241121 258370 208998 87369 288670 222025 257680 257750 218996 257850 TRUE FALSE FALSE 224219.6631 237895.8202 289927.6228 203399.4474 252462.3169 194633.8129 193205.7385 199065.9516 237978.7496 193282.6817 1.160060804 1.230818086 1.500018627 1.052341812 1.306181778 1.006990441 0.999601914 1.029921304 1.231247143 1 17.56035285 -6.263072438 24.98738216 1.052050348 1.251746771 0.385907842 0.123814546 160.2103306 2451357.149 0.042330687 0.03931472 5.46E-07 6.263072438 0.199696424 IVSGS(ph)PISTPSPSPLPR ddPTM_HeLa_A485_30min_R1 2 IVSGSPISTPSPSPLPR 17 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 IVS(0.115)GS(0.878)PIS(0.003)T(0.003)PS(0.001)PSPLPR;IVS(0.01)GS(0.911)PIS(0.037)T(0.037)PS(0.004)PS(0.002)PLPR ; 73.279 0.0065025 283130000 164889 237793 230742 222767 244545 222363 254130 271250 177244 288820 TRUE FALSE FALSE 201567.9892 265600.8228 316103.0678 234936.1971 220197.2412 234005.5828 199833.0494 204725.5122 212815.245 216822.4893 0.929645213 1.224968976 1.457888749 1.083541647 1.015564584 1.079249591 0.921643553 0.944207922 0.981518318 1 17.72615488 -5.512226778 16.29622713 0.994121639 1.216993016 0.36867217 0.125023018 5.547576596 8485.58672 0.037384788 0.051771205 3.07E-06 5.512226778 0.222871377 IVSGS(ph)PISTPSPSPLPR ddPTM_HeLa_A486_30min_R1 2 IVSGSPISTPSPSPLPR 17 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 IVSGS(0.999)PISTPSPSPLPR;IVS(0.001)GS(0.578)PIS(0.194)T(0.194)PS(0.032)PS(0.001)PLPR ; 193.54 3.10E-18 761070000 206383 262438 191235 91501 285730 241112 247881 257250 215457 263280 TRUE FALSE FALSE 191916.6175 241641.4571 265286.3135 213018.9522 249891.0791 211366.0529 185858.552 198679.7907 234132.9862 197352.9743 0.972453636 1.224412543 1.344222525 1.0793805 1.266213899 1.071005155 0.941757035 1.006723063 1.186366646 1 17.59041874 -6.453513464 6.883902158 1.030375699 1.183039382 0.276791983 0.111085498 0.327233694 27.57613302 0.039534812 0.034597179 3.52E-07 6.453513464 0.152663684 IVSQLLTLMDGLK ddPTM_HeLa_A485_30min_R1 2 IVSQLLTLMDGLK 13 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 176.51 8.96E-10 27311000 26379.7 28593.2 25434.9 30965 35092 32629 39959 41888 22209.9 44713 FALSE FALSE TRUE 32247.77326 31936.92601 34844.32794 32656.53954 31598.11726 34337.40399 31421.43321 31614.90232 26667.22321 33566.87198 0.960702364 0.951441827 1.038057045 0.972880034 0.941348282 1.022955133 0.936084638 0.94184833 0.794450648 1 15.03475048 -7.225468666 2.48418769 0.895764838 0.979494179 0.228669288 0.055815759 0.379880531 4.533605887 0.033440149 0.015116023 5.95E-08 7.225468666 0.083729341 IVSQLLTLMDGLK ddPTM_HeLa_A486_30min_R1 2 IVSQLLTLMDGLK 13 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 146.07 3.48E-05 21662700 22646.2 27368 17497.7 11741 26345.2 26715.9 30881.9 28601.3 21564.9 32408 FALSE FALSE TRUE 21058.81833 25199.26001 24273.27804 27333.64136 23040.73936 23419.96389 23154.92198 22089.40835 23434.1629 24292.82586 0.866873967 1.037312833 0.999195326 1.125173395 0.94845859 0.964069146 0.953158851 0.909297604 0.96465364 1 14.5682427 IVSRPEELREDDVGTGAGLLEIK(ac)K ddPTM_HeLa_A485_30min_R1 1 IVSRPEELREDDVGTGAGLLEIKK 24 3 B4DUR8;P49368-2;P49368 B4DUR8 CCT3 T-complex protein 1 subunit gamma 0 1 IVSRPEELREDDVGTGAGLLEIK(1)K 58.627 0.036904 57707000 25693 25117 27558 40213 52522 34208 49136 51159 33254 57621 FALSE TRUE FALSE 31408.31921 28054.21466 37752.85098 42409.73437 47292.72526 35999.07798 38637.6922 38612.17504 39927.77278 43257.14514 0.726083959 0.648545219 0.872754105 0.980409924 1.093292799 0.832211138 0.893209482 0.892619587 0.923033008 1 15.40065083 -4.882328428 4.310387195 0.939036222 0.688352286 0.677419764 0.069878403 0.125191398 4.051346479 0.019694394 0.044301199 1.31E-05 4.882328428 -0.250683937 IVTGGSDNHLILVDLR ddPTM_HeLa_A486_30min_R1 1 IVTGGSDNHLILVDLR 16 0 P34896-4;P34896-2;P34896 P34896-4 SHMT1 "Serine hydroxymethyltransferase, cytosolic" 0 0 67.416 0.017618 3438000 6108 6871.4 6433.8 6327.9 8457.5 6101.2 8111.5 8378.3 5698.6 9673.2 FALSE FALSE TRUE 5679.860742 6326.885239 8925.139663 14731.67099 7396.681487 5348.495976 6081.916905 6470.743987 6192.559236 7250.967758 0.783324507 0.872557354 1.230889443 2.031683423 1.020095763 0.737625122 0.838773128 0.892397291 0.854032102 1 12.82395784 -5.994276953 24.99988836 0.858742936 1.244411812 0.226645188 0.317337891 243.4914623 1063628.364 0.107506875 0.121555642 1.01E-06 5.994276953 0.385668876 IVVAGNNEDVS(ph)FSRPADLDLIQSTPFKPLALK ddPTM_HeLa_A486_30min_R1 1 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALK 32 2 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 IVVAGNNEDVS(0.83)FS(0.169)RPADLDLIQSTPFKPLALK 79.018 0.00037771 21338000 22549 24963 15290 16356 27082 33600 32659 28732 23330 33241 TRUE FALSE FALSE 20968.43154 22984.84097 21210.69748 38077.59459 23685.12303 29454.77362 24487.37277 22190.35082 25352.26318 24917.23724 0.841523133 0.92244741 0.851245958 1.528162782 0.950551733 1.182104314 0.982748309 0.890562248 1.017458836 1 14.60485649 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKTPPR 36 3 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKT(1)PPR;IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKT(1)PPR ; 228.07 3.42E-40 4132000000 639990 450200 269940 801620 462100 631910 944930 958070 392790 1350680 TRUE FALSE FALSE 782353.5676 502846.9738 369802.0391 845410.4708 416091.7015 664995.8305 743037.9861 723101.8303 471619.3501 1013980.333 0.771566806 0.495913932 0.364703365 0.833754308 0.410354804 0.655827148 0.732793292 0.713132007 0.465116861 1 19.95159824 -14 0.303786121 4.354745852 0.584510513 0.359961175 0.155613193 303.7360777 2.795567041 650.1942068 0.15053452 1.00E-14 14 -3.770235339 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKT(ph)PPR ddPTM_HeLa_A486_30min_R1 2 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKTPPR 36 3 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKT(1)PPR;IVVAGNNEDVSFSRPADLDLIQSTPFKPLALKT(1)PPR ; 211.8 2.66E-30 5274100000 1689710 1773410 1072970 1005190 2075100 2399800 2925600 2807400 2378400 3450100 TRUE FALSE FALSE 1571270.055 1632878.533 1488452.719 2340133.119 1814821.608 2103737.075 2193583.936 2168216.305 2584561.627 2586172.504 0.607565834 0.631388096 0.575542705 0.904863506 0.701740354 0.81345582 0.848197068 0.838388121 0.999377119 1 21.30238708 -5.114922621 0.240790015 1.034427757 0.347170691 0.742212336 0.075238094 3.536527744 0.255770571 0.127375225 0.720152896 7.67E-06 5.114922621 -0.687257066 IVVLFYK ddPTM_HeLa_A485_30min_R1 2 IVVLFYK 7 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;E9PFD4;B5MCE7;B5MCH7;E7ETZ4;Q9Y6E2 Q7L1Q6-2 BZW1;BZW2 Basic leucine zipper and W2 domain-containing protein 1;Basic leucine zipper and W2 domain-containing protein 2 0 0 ; ; 142.42 0.0036498 44809000 88271 77148 98056 125511 142849 77424 100144 84067 92024 175236 FALSE FALSE TRUE 107906.5794 86169.7875 134330.9949 132367.3481 128626.452 81477.80092 78747.4163 63449.43644 110492.3727 131552.8902 0.820252442 0.655020102 1.021117778 1.006191106 0.977754664 0.619353941 0.598598907 0.482311231 0.839908364 1 17.00528342 -6.266466322 24.93941599 0.668839211 0.89574096 0.224125272 0.167151786 540.3319049 2680658.397 0.058920341 0.053585954 5.41E-07 6.266466322 0.226901749 IVVLFYK ddPTM_HeLa_A486_30min_R1 2 IVVLFYK 7 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;E9PFD4;B5MCE7;B5MCH7;E7ETZ4;Q9Y6E2 Q7L1Q6-2 BZW1;BZW2 Basic leucine zipper and W2 domain-containing protein 1;Basic leucine zipper and W2 domain-containing protein 2 0 0 ; ; 161.68 0.0018615 59993000 186945 238580 194366 79208 243990 253630 260460 246380 223330 234450 FALSE FALSE TRUE 173841.1209 219674.0519 269629.7205 184400.227 213386.4991 222339.7093 195290.1531 190284.6524 242688.4242 175742.194 0.989182603 1.249979 1.534234405 1.049265534 1.214201862 1.265146999 1.111230881 1.082748816 1.380934303 1 17.42310108 -6.761711973 24.9996489 1.150624238 1.225168726 0.044120425 0.163210408 28.69615089 2631231.908 0.065519816 0.047323467 1.73E-07 6.761711973 0.074544488 IVVLLQR ddPTM_HeLa_A485_30min_R1 2 IVVLLQR 7 0 Q06323;H0YLU2;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 0 ; ; 138.61 0.003939 77515000 74623 107198 103610 71751 112251 96478 115949 141372 92375 100502 FALSE FALSE TRUE 91222.6289 119733.8736 141939.6506 75670.57545 101074.8963 101529.4389 91175.54893 106700.2953 110913.8152 75448.701 1.20906825 1.58695739 1.881273616 1.002940732 1.339650583 1.345675108 1.20844425 1.41420984 1.470055995 1 16.20320844 -5.267002141 24.99969288 1.277121233 1.561885513 0.299038859 0.211762082 604.3876075 2716188.219 0.059206167 0.09070287 5.41E-06 5.267002141 0.28476428 IVVLLQR ddPTM_HeLa_A486_30min_R1 2 IVVLLQR 7 0 Q06323;H0YLU2;Q06323-3;Q06323-2 Q06323 PSME1 Proteasome activator complex subunit 1 0 0 ; ; 160.24 0.0020576 72460000 88780 99556 92931 34445 113855 86943 95218 99291 90791 110175 FALSE FALSE TRUE 82556.98046 91666.81998 128916.372 80189.70075 99574.24424 76216.85663 71393.44929 76684.60681 98660.83698 82586.46288 0.999643011 1.109949703 1.560986722 0.970978753 1.205696924 0.922873483 0.864469149 0.928537246 1.194636912 1 16.3336177 -6.258266652 24.68977779 0.970284795 1.176871146 0.228452671 0.171190008 349.6760851 2721140.767 0.05868256 0.056316214 5.52E-07 6.258266652 0.206586351 IVVNLTGR ddPTM_HeLa_A485_30min_R1 2 IVVNLTGR 8 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 0 ; ; 169.57 8.98E-05 223290000 159549 210020 226500 167854 257050 192722 228800 243700 214120 242090 FALSE FALSE TRUE 195040.1246 234580.0121 310291.7755 177023.439 231457.1994 202812.6259 179915.0109 183932.1929 257091.92 181741.4183 1.073173778 1.290735014 1.707325596 0.974040153 1.27355229 1.115940592 0.989950516 1.012054349 1.414602804 1 17.47152772 -5.316037832 24.99997218 1.113830022 1.350448175 0.24881793 0.195446033 432.9718117 198251.5493 0.054975905 0.081542506 4.83E-06 5.316037832 0.236618153 IVVNLTGR ddPTM_HeLa_A486_30min_R1 2 IVVNLTGR 8 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 0 ; ; 178.99 3.44E-06 213010000 209405 217058 221331 63890 262730 201551 237440 224606 221796 233270 FALSE FALSE TRUE 194726.7909 199857.5336 307036.2906 148739.1488 229775.9535 176685.6868 178030.0006 173468.1169 241021.4559 174857.6737 1.113630227 1.142972621 1.755921168 0.850629805 1.314074177 1.010454292 1.018142338 0.992053213 1.378386495 1 17.41582158 -5.30823582 24.99993666 1.084414464 1.318057424 0.221331301 0.219887974 648.2233461 346297.3016 0.060528552 0.0897787 4.92E-06 5.30823582 0.23364296 IVVQK(ac)YHTINGHNCEVKK ddPTM_HeLa_A485_30min_R1 1 IVVQKYHTINGHNCEVKK 18 2 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 1 IVVQK(1)YHTINGHNCEVKK 76.713 0.0051229 14049000 18874 17513 18063 22629 32087 18689 30321 30327 21423 36441 FALSE TRUE FALSE 23072.45619 19560.99301 24745.25536 23865.16497 28892.30562 19667.52714 23842.67065 22889.2557 25722.3996 27356.92935 0.843386182 0.715028824 0.904533365 0.872362708 1.056123853 0.718923052 0.871540455 0.836689506 0.94025171 1 14.73961868 -14 0.103469494 1.432886372 0.773005014 0.198802229 0.092151429 321.8596981 2.244428355 30.05911141 1.436128517 1.00E-14 14 -0.659881358 IVVVTAGVR ddPTM_HeLa_A485_30min_R1 2 IVVVTAGVR 9 0 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ; ; 261.6 2.05E-32 906800000 353390 466690 519540 354780 565120 425130 528230 565520 377000 487810 FALSE FALSE TRUE 432000.3863 521265.3358 711739.4659 374160.733 508854.6685 447389.1494 415369.3453 426825.3333 452660.442 366207.9445 1.179658696 1.423413511 1.943539119 1.021716592 1.389523838 1.221680622 1.134244496 1.165527236 1.236074883 1 18.48230356 -5.305446548 24.99961414 1.184053305 1.506326233 0.379097865 0.203503036 490.298488 278527.9203 0.05721792 0.084868293 4.95E-06 5.305446548 0.322272928 IVVVTAGVR ddPTM_HeLa_A486_30min_R1 2 IVVVTAGVR 9 0 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ; ; 231.69 1.93E-23 723330000 414680 410720 386830 127094 487520 379540 433100 457010 339480 437690 FALSE FALSE TRUE 385613.0734 378173.0514 536620.9357 295881.255 426370.6957 332716.2137 324733.7991 352958.7995 368906.3997 328089.5751 1.175328638 1.152651837 1.635592766 0.901830712 1.299555755 1.014101754 0.989771769 1.075800105 1.124407563 1 18.32373023 -5.291603219 24.99834949 1.066484699 1.304337444 0.368296874 0.157259649 765.6482516 634531.0206 0.043455312 0.064464011 5.11E-06 5.291603219 0.237852745 IVYLYTK ddPTM_HeLa_A485_30min_R1 2 IVYLYTK 7 0 P49207 P49207 RPL34 60S ribosomal protein L34 0 0 ; ; 167.25 0.0010994 204250000 380300 462540 416890 399340 600410 474260 548500 621860 458270 627170 FALSE FALSE TRUE 464896.423 516630.0294 571114.9592 421154.933 540631.0722 499091.5203 431308.4942 469347.86 550240.5855 470828.0612 0.987401689 1.097279606 1.213001107 0.894498369 1.148255843 1.060029258 0.916063697 0.996856175 1.168665657 1 18.84484078 -6.546223188 24.85892888 1.015550414 1.071718749 0.048568707 0.099459335 677.822023 721789.3648 0.037702979 0.029206885 2.84E-07 6.546223188 0.056168335 IVYLYTK ddPTM_HeLa_A486_30min_R1 2 IVYLYTK 7 0 P49207 P49207 RPL34 60S ribosomal protein L34 0 0 ; ; 170.17 0.00070125 228820000 624260 684660 489970 202415 740800 618440 701450 710340 565370 694690 FALSE FALSE TRUE 580502.5977 630405.0481 679699.5059 471232.3495 647881.9563 542143.1606 525939.7908 548611.0886 614376.7268 520735.1023 1.114775238 1.210606017 1.30526923 0.904936785 1.244168011 1.041111226 1.009994887 1.05353199 1.179825835 1 18.99019014 -5.242989617 24.98851105 1.068729666 1.210255734 0.320375662 0.098620793 1023.077903 1385663.752 0.02593245 0.044817237 5.71E-06 5.242989617 0.141526068 IVYLYTK(ac)K ddPTM_HeLa_A485_30min_R1 2 IVYLYTKK 8 1 P49207 P49207 RPL34 60S ribosomal protein L34 0 1 ; IVYLYTK(1)K;IVYLYTK(1)K 182.68 3.67E-06 54224000 70070 100711 83393 73451 115439 104398 118479 143772 86987 127652 FALSE TRUE FALSE 85656.82976 112488.2754 114243.541 77463.44214 103945.4878 109864.1179 93164.99377 108511.6916 104444.493 95830.70566 0.893834906 1.173822885 1.192139202 0.808336343 1.08467831 1.146439621 0.972183113 1.13232696 1.089885463 1 16.54820037 IVYLYTK(ac)K ddPTM_HeLa_A486_30min_R1 2 IVYLYTKK 8 1 P49207 P49207 RPL34 60S ribosomal protein L34 0 1 ; IVYLYTK(1)K;IVYLYTK(1)K 155.01 0.00050578 49521000 79981 84402 63831 32639.8 96051 76844 91698 94650 67779 99285 FALSE TRUE FALSE 74374.74492 77713.67813 88548.07265 75987.10392 84003.38794 67363.76857 68754.19052 73100.26119 73654.13829 74423.38976 0.999346377 1.044210407 1.189788223 1.021011058 1.128722949 0.90514244 0.923825033 0.982221603 0.989663848 1 16.18346848 -6.261171063 24.99999956 0.956787837 1.078013708 0.506265863 0.057440651 20.38905902 1899774.75 0.019783065 0.01865015 5.48E-07 6.261171063 0.12122587 IVYYLMNIHVQPR ddPTM_HeLa_A485_30min_R1 1 IVYYLMNIHVQPR 13 0 O60825;F2Z2I2;O60825-2;Q5W015;Q5VX20;A0A1W2PR17;Q16875-3;Q16875-2;Q16875;Q16875-4 O60825;Q5W015 PFKFB2;PFKFB3 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 0 0 163.9 7.11E-07 11092000 11744 14384 12866 13702 13438 10679 15436 11702 9154.6 18607 FALSE FALSE TRUE 14356.41228 16066.08368 17625.6688 14450.50556 12100.06554 11238.13593 12137.9725 8832.066152 10991.84425 13968.61734 1.027761871 1.150155616 1.261804828 1.034497919 0.866232158 0.804527439 0.868945881 0.632279197 0.786895652 1 13.7699016 -5.714362188 2.578520111 0.801415695 1.14805186 0.674947947 0.101160104 0.152617424 2.073177214 0.032678971 0.042518922 1.93E-06 5.714362188 0.346636164 IVYYLMNIHVQPR ddPTM_HeLa_A486_30min_R1 2 IVYYLMNIHVQPR 13 0 O60825;F2Z2I2;O60825-2;Q5W015;Q5VX20;A0A1W2PR17;Q16875-3;Q16875-2;Q16875;Q16875-4 O60825;Q5W015 PFKFB2;PFKFB3 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 0 0 ; ; 145.91 2.66E-05 18380700 33306 40976 31085 14769 37404 41144 43039 38713 36159 43343 FALSE FALSE TRUE 30971.42139 37728.91253 43121.94449 34382.97838 32712.44154 36068.0716 32270.18698 29898.895 39293.29123 32489.63068 0.953270959 1.161260123 1.327252529 1.058275445 1.006857907 1.110141016 0.993245731 0.920259614 1.209410215 1 14.98769172 -5.496180646 24.61249791 1.036751024 1.156011587 0.157137207 0.11106721 1016.709098 937285.2784 0.031267041 0.046210084 3.19E-06 5.496180646 0.119260563 IWDANGS(ph)RDFLDSLGFSTR ddPTM_HeLa_A485_30min_R1 2 IWDANGSRDFLDSLGFSTR 19 1 P04818-2;P04818 P04818-2 TYMS Thymidylate synthase 1 0 IWDANGS(1)RDFLDSLGFSTR;IWDANGS(1)RDFLDSLGFSTR ; 180.83 2.36E-18 81563000 50504 64396 67248 54588 90845 64914 78298 81941 59794 77533 TRUE FALSE FALSE 61738.44056 71926.55203 92125.83362 57570.00422 81800.15282 68312.79666 61568.99266 61844.84127 71794.10734 58205.44999 1.060698621 1.235735692 1.582769889 0.98908271 1.405369305 1.173649489 1.057787418 1.062526641 1.233460223 1 15.82886662 -6.519283351 14.47959855 1.096795774 1.260379928 0.184548925 0.16425041 1.196249313 4813.587347 0.059824095 0.048188669 3.02E-07 6.519283351 0.163584154 IWDANGS(ph)RDFLDSLGFSTR ddPTM_HeLa_A486_30min_R1 1 IWDANGSRDFLDSLGFSTR 19 1 P04818-2;P04818 P04818-2 TYMS Thymidylate synthase 1 0 IWDANGS(1)RDFLDSLGFSTR 119.32 9.88E-06 42854000 17314 21710 16643 10334 23476 20149 25290 22325 19091 26161 TRUE FALSE FALSE 16100.37801 19989.62053 23087.61531 24058.07425 20531.42117 17663.22124 18962.17451 17242.08485 20745.82325 19610.11532 0.821024137 1.019352523 1.17733195 1.226819621 1.046981154 0.900719907 0.966958848 0.879244439 1.057914393 1 14.2593104 -6.106902893 6.342927685 0.95457418 1.074668674 0.156903899 0.110742941 0.420208849 21.46391769 0.039078855 0.039215531 7.82E-07 6.106902893 0.120094493 IWDMTPVVGCSLATGFS(ph)PH ddPTM_HeLa_A485_30min_R1 1 IWDMTPVVGCSLATGFSPH 19 0 Q8IWB7 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 1 0 IWDMTPVVGCSLATGFS(1)PH 281.99 1.06E-69 136210000 116080 172380 162660 120600 203580 128580 154370 183130 136380 144970 TRUE FALSE FALSE 141901.5955 192538.3415 222834.7028 127188.0726 183310.8604 135312.25 121387.5884 138217.0804 163750.215 108831.647 1.303863347 1.769139279 2.04751751 1.168668087 1.684352534 1.243317121 1.115370315 1.270008166 1.504619471 1 16.73173861 -5.966446602 1.273278544 1.235364724 1.664724914 0.312348324 0.261103829 0.544710374 1.843722056 0.112984036 0.132472268 1.08E-06 5.966446602 0.429360191 IWDMTPVVGCSLATGFS(ph)PH ddPTM_HeLa_A486_30min_R1 2 IWDMTPVVGCSLATGFSPH 19 0 Q8IWB7 Q8IWB7 WDFY1 WD repeat and FYVE domain-containing protein 1 1 0 IWDMTPVVGCSLATGFS(1)PH;IWDMTPVVGCSLATGFS(1)PH ; 191.78 1.56E-18 254160000 86148 102190 105310 35317 143240 104670 120200 119290 90411 93022 TRUE FALSE FALSE 80109.47007 94092.09223 146088.8523 82219.76082 125273.5035 91756.87961 90124.68865 92130.27108 98247.89828 69728.68573 1.148873942 1.349402921 2.095104056 1.179138255 1.796584895 1.315912937 1.292505197 1.321267856 1.409002583 1 16.08946467 -6.48881151 24.43297961 1.28557224 1.522172808 0.160157888 0.280808687 951.5212067 682430.7659 0.097234419 0.085697512 3.24E-07 6.48881151 0.236600568 IWDPTPSHT(ph)PAGAATPGRGDT(ph)PGHATPGHGGATSSAR ddPTM_HeLa_A485_30min_R1 2 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 IWDPTPS(0.003)HT(0.96)PAGAAT(0.037)PGRGDT(0.965)PGHAT(0.034)PGHGGATSSAR;IWDPTPSHT(0.978)PAGAAT(0.021)PGRGDT(0.994)PGHAT(0.006)PGHGGATSSAR ; 155.96 1.88E-10 4611200000 889000 1773820 1821150 793010 1988480 1327380 1487820 1650750 1414270 1221210 TRUE FALSE FALSE 1086754.983 1981252.819 2494869.169 836330.1283 1790499.949 1396879.564 1169935.103 1245900.974 1698101.017 916784.8217 1.185398097 2.161088155 2.721324689 0.912242555 1.953020935 1.52367222 1.276128351 1.35898953 1.85223509 1 19.80622363 -5.270461682 24.9999323 1.447528238 2.036452119 0.264438046 0.464544475 883.8270346 2448998.121 0.128977966 0.194397536 5.36E-06 5.270461682 0.588923881 IWDPTPSHTPAGAAT(ph)PGR ddPTM_HeLa_A485_30min_R1 4 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 IWDPTPSHTPAGAAT(1)PGR;IWDPTPSHTPAGAAT(1)PGR;IWDPTPSHTPAGAAT(1)PGR;IWDPTPSHT(0.004)PAGAAT(0.996)PGR ;;; 169.51 3.74E-12 1481940000 1940410 2168640 2079560 2015060 2013840 1512300 1780310 1483150 1821540 2192190 TRUE FALSE FALSE 2372047.51 2422243.583 2848875.782 2125137.625 1813335.019 1591481.69 1399932.225 1119405.137 2187106.37 1645717.377 1.441345606 1.471846635 1.731084463 1.29131384 1.101850806 0.967044349 0.850651664 0.680192816 1.328968388 1 20.65028517 -5.712301307 2.105455687 0.943885055 1.540123785 0.683184301 0.171970695 0.172485394 1.569738909 0.057114974 0.076358574 1.94E-06 5.712301307 0.59623873 IWDPTPSHTPAGAAT(ph)PGR ddPTM_HeLa_A486_30min_R1 4 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 IWDPTPSHTPAGAAT(1)PGR;IWDPTPSHT(0.007)PAGAAT(0.993)PGR;IWDPTPSHTPAGAAT(1)PGR;IWDPTPSHT(0.002)PAGAAT(0.998)PGR ;;; 159.67 1.11E-09 1498870000 2112960 2581690 1833850 502671 1881710 1942850 1836370 1871520 2045750 2061830 TRUE FALSE FALSE 1964852.415 2377107.482 2543965.832 1170243.492 1645688.386 1703160.92 1376890.803 1445415.751 2223077.257 1545534.348 1.271309446 1.538048951 1.646010544 0.757177279 1.064802208 1.101988398 0.890883341 0.935220724 1.438387481 1 20.55967429 -5.253063298 24.99962405 1.023261371 1.490415588 0.556406168 0.187445072 454.1263548 1355402.629 0.050615502 0.085844678 5.58E-06 5.253063298 0.467154217 IWDPTPSHTPAGAAT(ph)PGRGDT(ph)PGHAT(ph)PGHGGATSSAR ddPTM_HeLa_A485_30min_R1 2 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 3 0 IWDPT(0.006)PS(0.028)HT(0.202)PAGAAT(0.798)PGRGDT(0.965)PGHAT(0.901)PGHGGAT(0.035)S(0.033)S(0.032)AR;IWDPTPSHTPAGAAT(1)PGRGDT(1)PGHAT(0.989)PGHGGAT(0.004)S(0.004)S(0.004)AR ; 155.03 1.89E-10 1450340000 330880 463990 513310 385680 550550 412430 492240 582490 471190 511770 TRUE FALSE FALSE 404483.1145 518249.5943 703204.7296 406748.7218 495735.3089 434024.1971 387068.9028 439633.4142 565753.511 384195.1574 1.052806384 1.348922766 1.830332101 1.058703406 1.290321597 1.129697209 1.00747991 1.144297125 1.472568043 1 18.55147981 IWDPTPSHTPAGAAT(ph)PGRGDT(ph)PGHATPGHGGATSSAR ddPTM_HeLa_A485_30min_R1 2 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 IWDPTPS(0.001)HT(0.001)PAGAAT(0.999)PGRGDT(0.998)PGHAT(0.002)PGHGGATSSAR;IWDPTPS(0.002)HT(0.029)PAGAAT(0.969)PGRGDT(0.967)PGHAT(0.029)PGHGGAT(0.001)S(0.001)S(0.001)AR ; 127.76 2.55E-06 1277150000 111017 197374 232000 98555 263760 144163 210480 215213 183809 168186 TRUE FALSE FALSE 135712.3486 220455.1724 317826.4543 103938.8101 237499.1283 151711.1518 165509.2285 162431.6743 220697.7803 126260.3254 1.074861388 1.746036782 2.517231389 0.823210377 1.881027373 1.201574218 1.310856977 1.286482304 1.747958272 1 16.94604185 -5.28060559 24.99063959 1.351386287 1.776042769 0.185066071 0.437086565 1416.935805 1847525.649 0.120711178 0.179361402 5.24E-06 5.28060559 0.424656482 IWDPTPSHTPAGAAT(ph)PGRGDT(ph)PGHATPGHGGATSSAR ddPTM_HeLa_A486_30min_R1 3 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 IWDPTPSHTPAGAAT(1)PGRGDT(0.999)PGHAT(0.001)PGHGGATSSAR;IWDPTPS(0.006)HT(0.028)PAGAAT(0.966)PGRGDT(0.795)PGHAT(0.17)PGHGGAT(0.012)S(0.013)S(0.012)AR;IWDPTPS(0.002)HT(0.006)PAGAAT(0.989)PGRGDT(0.939)PGHAT(0.053)PGHGGAT(0.004)S(0.003)S(0.003)AR ;; 205.6 1.70E-29 3719600000 607110 615210 591600 78553 793660 493030 607340 582830 555950 401050 TRUE FALSE FALSE 564554.7241 566458.519 820683.3636 182875.3538 694111.7622 432204.9714 455377.1082 450132.3321 604140.1936 300624.4696 1.877940026 1.884272826 2.729928687 0.608318259 2.308899748 1.437690591 1.5147706 1.497324329 2.009617495 1 18.19760292 -9.153365632 0.081768477 9.43E-11 2.718612856 0.16460189 0.534298715 98.91585451 2.346612444 50.73892397 26.98682842 7.02E-10 9.153365632 2.718612856 IWDPTPSHTPAGAAT(ph)PGRGDTPGHATPGHGGATSSAR ddPTM_HeLa_A485_30min_R1 3 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 IWDPTPSHT(0.003)PAGAAT(0.997)PGRGDTPGHATPGHGGATSSAR;IWDPTPSHTPAGAAT(1)PGRGDTPGHATPGHGGATSSAR;IWDPTPSHTPAGAAT(1)PGRGDTPGHATPGHGGATSSAR ;; 206.89 6.05E-29 17551500000 2833590 5914400 6550400 1338240 7047400 3376790 4460980 5077600 4709400 2871030 TRUE FALSE FALSE 3463912.32 6606037.632 8973665.545 1411344.663 6345736.111 3553593.503 3507855.18 3832310.639 5654533.383 2155335.058 1.607134031 3.064970157 4.163466608 0.654814506 2.944199365 1.64874296 1.627521979 1.778057951 2.623505501 1 21.03948073 -5.262511946 24.99955945 1.826210411 2.957168191 0.287267202 0.8545778 127.9960512 2983378.894 0.231380338 0.366434073 5.46E-06 5.262511946 1.13095778 IWDPTPSHTPAGAAT(ph)PGRGDTPGHATPGHGGATSSAR ddPTM_HeLa_A486_30min_R1 5 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 IWDPT(0.001)PS(0.014)HT(0.194)PAGAAT(0.778)PGRGDT(0.013)PGHAT(0.001)PGHGGATSSAR;IWDPTPSHT(0.001)PAGAAT(0.999)PGRGDT(0.001)PGHATPGHGGATSSAR;IWDPTPS(0.018)HT(0.016)PAGAAT(0.964)PGRGDTPGHATPGHGGATSSAR;IWDPTPSHTPAGAAT(0.999)PGRGDT(0.001)PGHATPGHGGATSSAR;IWDPTPSHT(0.013)PAGAAT(0.985)PGRGDT(0.002)PGHAT(0.001)PGHGGATSSAR ;;;; 127.14 1.09E-05 12460730000 3662373 4143360 4762810 125497 5444850 2430674 3009380 3227320 3940540 1062042 TRUE FALSE FALSE 3405659.565 3815025.064 6607097.584 292163.3583 4761906.142 2130802.155 2256401.294 2492529.688 4282109.18 796099.7705 4.277930596 4.792144409 8.299333613 0.366993396 5.981544423 2.676551651 2.834319739 3.130926274 5.378859961 1 19.60258972 -5.257702028 24.98345535 3.238788726 5.690036764 0.303601291 1.88313647 431.6726056 2885634.069 0.495492344 0.817526547 5.52E-06 5.257702028 2.451248038 IWHHT(ph)FYNELR ddPTM_HeLa_A485_30min_R1 2 IWHHTFYNELR 11 0 C9JUM1;C9JZR7;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;A6NL76 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1;ACTA1;ACTC1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1" 1 0 IWHHT(1)FYNELR;IWHHT(1)FYNELR ; 166.03 6.72E-08 518110000 147933 243270 179803 199834 194859 242050 231170 258320 162184 200587 TRUE FALSE FALSE 180840.1855 271718.3103 246319.6119 210750.4254 175458.1538 254723.3637 181778.641 194966.615 194732.8412 150584.3524 1.200922822 1.804425931 1.63575835 1.399550631 1.165181846 1.691565954 1.207154914 1.294733562 1.293181118 1 17.20021234 -7.843443681 0.303030911 0.94412902 1.577176845 0.339033637 0.200655494 2.008895192 0.608382475 0.472113761 0.314834055 1.43E-08 7.843443681 0.633047825 IWHHT(ph)FYNELR ddPTM_HeLa_A486_30min_R1 2 IWHHTFYNELR 11 0 C9JUM1;C9JZR7;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;A6NL76 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1;ACTA1;ACTC1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1" 1 0 IWHHT(1)FYNELR;IWHHT(1)FYNELR ; 155.43 4.34E-07 579120000 431750 386810 363100 226990 489720 400940 392180 420360 391170 426040 TRUE FALSE FALSE 401486.5546 356157.7669 503702.0442 528444.1914 428294.7511 351476.0993 294052.4159 324653.2044 425076.9306 319356.8109 1.257172356 1.115234605 1.577239085 1.654714017 1.341116696 1.100574928 0.920764505 1.016584564 1.331040754 1 18.28480969 -6.242741969 4.171269616 1.062189709 1.403271184 0.457219095 0.172501079 0.21386254 8.975226465 0.06573366 0.062593313 5.72E-07 6.242741969 0.341081475 IWHHTFYNELR ddPTM_HeLa_A485_30min_R1 7 IWHHTFYNELR 11 0 C9JUM1;C9JZR7;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;A6NL76 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1;ACTA1;ACTC1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1" 0 0 ;;;;;; ;;;;;; 186.87 3.66E-10 68307480000 8765527 14122088 14062906 4875510 13803723 9928896 11760236 12958322 10410448 9101831 FALSE FALSE TRUE 10715388.24 15773543.35 19265360.14 5141846.766 12429375.87 10448757.64 9247565.506 9780273.212 12499729.42 6832912.038 1.56820228 2.30846574 2.819494826 0.752511775 1.819045204 1.529180763 1.353385709 1.431347741 1.82934148 1 22.70406912 -5.257313488 24.99984659 1.428224897 2.239695393 0.457474524 0.419666879 328.7495893 1991971.122 0.112804462 0.186780753 5.53E-06 5.257313488 0.811470495 IWHHTFYNELR ddPTM_HeLa_A486_30min_R1 8 IWHHTFYNELR 11 0 C9JUM1;C9JZR7;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;A6NL76 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1;ACTA1;ACTC1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1" 0 0 ;;;;;;; ;;;;;;; 212.15 1.82E-20 25716129000 2889974 3160864 3098958 196857.2 4113533 2344454 2748745 2750319 2658303 1562548 FALSE FALSE TRUE 2687401.746 2910385.625 4298957.531 458293.5102 3597575.334 2055219.102 2060979.928 2124131.403 2888726.844 1171275.81 2.294422648 2.484799566 3.670320426 0.391277192 3.071501437 1.754684152 1.759602571 1.813519398 2.466307952 1 20.15964941 -8.192243938 0.101474179 3.75E-11 3.483056084 0.173425779 0.821676292 31.3395133 1.852325153 34.783079 24.78406039 6.42E-09 8.192243938 3.483056084 IWHHTFYNELRV ddPTM_HeLa_A485_30min_R1 2 IWHHTFYNELRV 12 1 C9JUM1 C9JUM1 ACTB 0 0 ; ; 131.37 0.00020409 17969400 15664.3 29583 24626 12926.4 26826 15563.4 18107.7 17003.8 21815.8 20819.8 FALSE FALSE TRUE 19148.76949 33042.47451 33736.18217 13632.5365 24155.10925 16378.27556 14238.84197 12833.59139 26194.03095 15629.80702 1.225144333 2.114067977 2.158451613 0.872214 1.545451535 1.047887254 0.911005616 0.821097239 1.675902391 1 13.93201235 -5.263664872 24.99989876 1.122754817 1.860705984 0.454296586 0.355064498 168.5879322 1893826.353 0.097684296 0.153237822 5.45E-06 5.263664872 0.737951167 IWHHTFYNELRV ddPTM_HeLa_A486_30min_R1 1 IWHHTFYNELRV 12 1 C9JUM1 C9JUM1 ACTB 0 0 97.911 0.0021541 5648500 7802.6 6262 4906.5 1586.7 6894.9 4932.6 5675.5 6418.5 3155.6 3963.4 FALSE FALSE TRUE 7255.678033 5765.776314 6806.428201 3693.917787 6030.07735 4324.065963 4255.429871 4957.147665 3429.129949 2970.938843 2.442217231 1.940725346 2.291002461 1.243350329 2.029687472 1.455454384 1.432351891 1.668545846 1.154224348 1 11.53670319 -1 0.162191613 0.935443921 6.54201045 0.670257839 0.268352086 37.06937051 0.387246507 0.739562919 49.8355426 0.1 1 5.606566528 IWLS(ph)TETLANED ddPTM_HeLa_A485_30min_R1 2 IWLSTETLANED 12 0 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 IWLS(0.5)T(0.5)ETLANED;IWLS(0.497)T(0.497)ET(0.005)LANED ; 131.17 2.70E-05 41777100 54483.8 76116 68138 56660.2 80910 70010 72470 86770 64049 77928 TRUE FALSE FALSE 66603.53334 85017.10408 93345.08166 59755.40325 72854.31631 73675.61534 56986.19247 65489.52145 76903.04681 58501.98376 1.138483331 1.453234551 1.595588314 1.021425248 1.245330699 1.259369522 0.974089917 1.119441038 1.31453742 1 15.83619793 -5.271594183 24.98197297 1.141700531 1.401515321 0.387888545 0.150703969 700.6914836 1723779.821 0.042581685 0.063953651 5.35E-06 5.271594183 0.25981479 IWLS(ph)TETLANED ddPTM_HeLa_A486_30min_R1 1 IWLSTETLANED 12 0 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 IWLS(0.491)T(0.491)ET(0.017)LANED 61.78 0.026263 12063000 21340 23654 22758 7941.6 28688 20378 21303 25603 20895 22770 TRUE FALSE FALSE 19844.1762 21779.57089 31570.50708 18488.44615 25089.68354 17863.96955 15972.76408 19773.75581 22706.19542 17068.24379 1.16263726 1.276028815 1.849663472 1.083207293 1.469962806 1.046620248 0.935817667 1.158511447 1.330318204 1 14.059027 -6.267512877 24.90633891 1.094258229 1.374077697 0.285086589 0.216889887 646.2291392 2650062.962 0.07616983 0.068905053 5.40E-07 6.267512877 0.279819468 IWNVHSVLNVLHSLVDK ddPTM_HeLa_A485_30min_R1 2 IWNVHSVLNVLHSLVDK 17 0 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 ; ; 223.29 1.89E-25 15505700 42304 43713 35806 42073 53413 31427.9 60359 51024 26570.1 60921 FALSE FALSE TRUE 51714.37885 48824.8551 49052.12941 44371.34146 48095.01418 33073.41625 47462.80656 38510.284 31902.47535 45734.51587 1.130751641 1.067571268 1.072540695 0.97019375 1.05161306 0.723160957 1.037789636 0.842039831 0.697557955 1 15.48099576 -5.726050047 0.899317788 0.855142484 1.109583964 0.433658235 0.10864475 0.573985116 0.996197753 0.052436627 0.088961052 1.88E-06 5.726050047 0.25444148 IWNVHSVLNVLHSLVDK ddPTM_HeLa_A486_30min_R1 2 IWNVHSVLNVLHSLVDK 17 0 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 ; ; 198.85 1.09E-18 9320500 25752 24751 15304 10530.2 19786.3 19581.5 29537 25991 20483 28307 FALSE FALSE TRUE 23946.91778 22789.64062 21230.11866 24514.83777 17304.51775 17165.73362 22146.53019 20073.41668 22258.48293 21218.74295 1.12857382 1.074033493 1.000536116 1.155338835 0.815529826 0.808989187 1.043724892 0.946022897 1.049001017 1 14.37305157 -5.748533478 24.99914216 0.939427005 1.08214402 0.408892129 0.085557318 254.4657721 492906.1451 0.026584668 0.034099575 1.78E-06 5.748533478 0.142717015 IWNVHSVLNVLHSLVDKSNINR ddPTM_HeLa_A485_30min_R1 2 IWNVHSVLNVLHSLVDKSNINR 22 1 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 ; ; 158.73 3.42E-17 11370000 6685.1 14911.5 10972 5542.5 14187.8 10517.4 18075.3 28057 6157.3 10861.6 FALSE FALSE TRUE 8172.177432 16655.27021 15030.99938 5845.272741 12775.21282 11068.0748 14213.36449 21175.97676 7393.013632 8154.003013 1.002228895 2.042588185 1.843388991 0.716859281 1.566741243 1.357379288 1.743114943 2.597003794 0.906672909 1 12.99329277 -6.766739115 24.82958512 1.694781591 1.443506151 0 0.564298629 474.267729 2221941.36 0.227802632 0.158729694 1.71E-07 6.766739115 -0.251275441 IWPYVYTLFSNK ddPTM_HeLa_A485_30min_R1 2 IWPYVYTLFSNK 12 0 F8VS11;P27144 F8VS11 AK4 "Adenylate kinase 4, mitochondrial" 0 0 ; ; 182.71 6.16E-09 7029700 12642 8824.8 10112.4 13298 11752.2 10699.2 16043.9 11586.9 7375.1 22421.9 FALSE FALSE TRUE 15454.16929 9856.783594 13853.39757 14024.43607 10582.1097 11259.39357 12615.9897 8745.194607 8855.214922 16832.53297 0.918113115 0.585579343 0.823013244 0.83317443 0.628670071 0.668906669 0.74950037 0.519541213 0.526077384 1 14.03896467 -5.768464957 24.98263719 0.660801761 0.77773093 0.098976632 0.149626236 347.9158824 1237170.005 0.044601762 0.051650377 1.70E-06 5.768464957 0.116929169 IWPYVYTLFSNK ddPTM_HeLa_A486_30min_R1 2 IWPYVYTLFSNK 12 0 F8VS11;P27144 F8VS11 AK4 "Adenylate kinase 4, mitochondrial" 0 0 ; ; 182.71 6.16E-09 8137500 10331.6 14048.5 10313.6 4988.7 11991.3 13532.4 16761.6 16074.9 15263.2 14439.4 FALSE FALSE TRUE 9607.408192 12935.2457 14307.30213 11613.94571 10487.23934 11862.91008 12567.67039 12414.99618 16586.22647 10823.68026 0.887628604 1.195087566 1.321851883 1.073012639 0.968916218 1.09601446 1.161127278 1.147021705 1.532401741 1 13.40190351 -7.54633692 24.99771103 1.290704585 1.109783787 0.132402703 0.16387518 417.4756243 444865.3409 0.107162807 0.04050821 2.84E-08 7.54633692 -0.180920798 IWSLAETAT(ph)SPDNPRR ddPTM_HeLa_A486_30min_R1 1 IWSLAETATSPDNPRR 16 1 P78415 P78415 IRX3 Iroquois-class homeodomain protein IRX-3 1 0 IWS(0.014)LAET(0.073)AT(0.456)S(0.456)PDNPRR 56.851 0.02985 38373000 20596 20341 16123 9135.6 22056 16366 18871 18791 13791 22654 TRUE FALSE FALSE 19152.32676 18729.10508 22366.25739 21268.13849 19289.53082 14346.92932 14149.2762 14512.6995 14986.41498 16981.29095 1.127848691 1.102925869 1.317111724 1.252445327 1.135928409 0.844866822 0.833227359 0.854628753 0.88252507 1 14.05165852 -6.181896092 4.16446539 0.870374427 1.200171304 0.819154918 0.071686183 0.094410902 3.072992649 0.025591717 0.025356492 6.58E-07 6.181896092 0.329796877 IWSLAETATSPDNPRRS(ph)PPGAGGSPPGAAVAPSALQLSPAAAAAAAHR ddPTM_HeLa_A486_30min_R1 1 IWSLAETATSPDNPRRSPPGAGGSPPGAAVAPSALQLSPAAAAAAAHR 48 2 P78415 P78415 IRX3 Iroquois-class homeodomain protein IRX-3 1 0 IWS(0.013)LAET(0.049)AT(0.06)S(0.067)PDNPRRS(0.77)PPGAGGS(0.042)PPGAAVAPSALQLSPAAAAAAAHR 134.62 1.36E-11 190950000 62822 82306 81787 23444 115640 75470 85930 112490 68390 88934 TRUE FALSE FALSE 58418.50221 75783.77281 113457.1167 54578.81679 101135.3529 66159.27872 64429.40513 86878.48264 74318.10026 66664.34754 0.876308017 1.136796138 1.701915955 0.818710732 1.517083068 0.992423704 0.966474698 1.303222575 1.114810285 1 16.02462779 IWSTVPT(ph)DEEDEMEESTNRPR ddPTM_HeLa_A486_30min_R1 2 IWSTVPTDEEDEMEESTNRPR 21 1 Q9GZL7 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 1 0 IWSTVPT(1)DEEDEMEESTNRPR;IWS(0.001)T(0.004)VPT(0.995)DEEDEMEESTNRPR ; 165.85 1.71E-13 155536000 67253 79280 67176 20356.4 84335 72394 81188 71190 57432 65292 TRUE FALSE FALSE 62538.91199 72997.56407 93188.34624 47390.72796 73756.91791 63462.76433 60873.90368 54981.59107 62410.252 48942.45822 1.277804881 1.491497704 1.904038939 0.968294803 1.507012941 1.296681177 1.243785169 1.123392512 1.27517608 1 15.57879894 -6.852740381 0.393571388 1.018684343 1.525265064 0.276331227 0.22168825 1.62398591 0.617687881 0.252869608 0.283511025 1.40E-07 6.852740381 0.506580722 IWTHPGWS(ph)PLK ddPTM_HeLa_A485_30min_R1 2 IWTHPGWSPLK 11 0 O43172-2;O43172 O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 1 0 IWTHPGWS(1)PLK;IWTHPGWS(1)PLK ; 93.494 0.00066611 108580000 356890 356320 289730 452820 466610 413000 580310 590870 333570 614690 TRUE FALSE FALSE 436278.9492 397988.5244 396913.1837 477556.41 420152.67 434624.0414 456322.0278 445958.2061 400514.4393 461459.0955 0.945433633 0.862456777 0.860126472 1.034883513 0.910487352 0.941847383 0.988867772 0.966408963 0.867930534 1 18.81584325 -5.226779166 24.98886128 0.955787035 0.886650738 0.293119201 0.049119916 777.0526343 560228.1948 0.012977545 0.022476619 5.93E-06 5.226779166 -0.069136297 IWTHPGWS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 IWTHPGWSPLK 11 0 O43172-2;O43172 O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 1 0 IWTHPGWS(1)PLK;IWTHPGWS(1)PLK ; 143.21 7.74E-07 453950000 419870 456360 278310 228880 451520 494530 629980 571860 366710 685850 TRUE FALSE FALSE 390439.2812 420196.3716 386079.0854 532844.207 394886.1513 433519.9166 472352.3408 441659.9616 398496.7181 514108.6959 0.759448895 0.817329827 0.750967818 1.036442704 0.768098565 0.843245641 0.918779131 0.859078956 0.775121528 1 18.97171389 -14 0.182678595 1.618144369 0.810819495 0.24878055 0.08377602 204.1530057 1.97404097 46.37518199 0.251798242 1.00E-14 14 -0.807324874 IWYEHR ddPTM_HeLa_A486_30min_R1 2 IWYEHR 6 0 O75874;H0YL11;P48735-2;P48735 O75874 IDH1;IDH2 "Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial" 0 0 ; ; 133.99 0.018175 431520000 88467 109102 92032 31090 133995 99768 113080 118433 97808 112890 FALSE FALSE TRUE 82265.92014 100456.3602 127669.2551 72379.0912 117188.0976 87459.63853 84786.18796 91468.39127 106286.0762 84621.60921 0.972162086 1.1871242 1.508707484 0.855326339 1.384848371 1.033537879 1.001944879 1.080910563 1.256015776 1 16.3687385 IYCKPHFNQLFK ddPTM_HeLa_A486_30min_R1 1 IYCKPHFNQLFK 12 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 0 0 91.937 0.0060531 5097800 28651 30749 22751 12282 34827 30230 39477 35898 23727 31694 FALSE FALSE TRUE 26642.71285 28312.33725 31560.79649 28593.1167 30458.67291 26500.52996 29599.43705 27724.80905 25783.67546 23757.61611 1.121438815 1.191716253 1.328449637 1.203534756 1.28205931 1.115454086 1.245892556 1.166986154 1.085280415 1 14.53610246 -7.873972174 1.615677703 1.000052772 1.216291061 0.559374147 0.061655518 0.260411213 1.467827673 0.058442056 0.017267119 1.34E-08 7.873972174 0.21623829 IYCQITQHLLQNHK ddPTM_HeLa_A486_30min_R1 1 IYCQITQHLLQNHK 14 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 0 0 132.86 2.61E-05 6920000 7512.6 7921 7068.8 3204.6 10544 8438.6 9235.6 9467.3 8361 9939.3 FALSE FALSE TRUE 6986.005535 7293.311112 9806.028669 7460.470752 9221.473201 7397.531329 6924.755196 7311.80246 9085.738212 7450.434586 0.937664166 0.978910831 1.316168682 1.001347058 1.237709438 0.992899306 0.929443124 0.981392746 1.219491039 1 12.86310887 IYEFPET(ph)DDEEENKLVK ddPTM_HeLa_A486_30min_R1 2 IYEFPETDDEEENKLVK 17 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181 G3V1Q4 7-Sep Septin-7 1 0 IYEFPET(1)DDEEENKLVK;IYEFPET(1)DDEEENKLVK ; 224.56 3.28E-34 215193000 401430 374910 171136 298414 338330 526930 684690 615040 264066 863230 TRUE FALSE FALSE 373291.83 345200.7662 237404.4424 694722.873 295893.4966 461922.734 513373.3201 475008.8182 286955.4535 647071.5893 0.576894174 0.533481568 0.366890536 1.07364144 0.457280928 0.713866505 0.793379479 0.734090054 0.443467861 1 19.30356581 -14 0.166302375 2.277544872 0.556851706 0.222337893 0.198920243 209.4177131 1.956356403 89.57109018 0.756073747 1.00E-14 14 -1.720693166 IYFMAGSSR ddPTM_HeLa_A485_30min_R1 2 IYFMAGSSR 9 0 P14625 P14625 HSP90B1 Endoplasmin 0 0 ; ; 242.52 7.08E-24 230680000 146375 179124 208270 148229 229070 164693 213860 181876 176396 201176 FALSE FALSE TRUE 178935.6138 200070.9936 285317.7398 156326.3749 206262.9865 173316.0708 168167.0639 137270.6258 211797.0592 151026.5256 1.184795936 1.324740756 1.889189589 1.035092176 1.365740129 1.147586956 1.113493562 0.908917326 1.40238318 1 17.20444243 -5.899221042 1.364006613 1.106569428 1.420987721 0.220088553 0.234905319 0.626255356 2.428951533 0.095107277 0.117309947 1.26E-06 5.899221042 0.314418294 IYFMAGSSR ddPTM_HeLa_A486_30min_R1 3 IYFMAGSSR 9 0 P14625 P14625 HSP90B1 Endoplasmin 0 0 ;; ;; 211.39 6.58E-13 265523000 227871 276839 278852 67217 330575 254887 262540 261621 249221 253751 FALSE FALSE TRUE 211898.4196 254901.2694 386830.9623 156484.573 289111.201 223441.6334 196849.7151 202055.6094 270823.6769 190210.098 1.114022977 1.34010377 2.033703607 0.822693299 1.519957164 1.174709628 1.034906754 1.062275934 1.423813351 1 17.53723431 -5.864724156 1.245909282 1.144013591 1.420812275 0.104033573 0.310505291 1.026644352 3.356252187 0.130014832 0.16886019 1.37E-06 5.864724156 0.276798683 IYHLPDAES(ph)DEDEDFK ddPTM_HeLa_A485_30min_R1 5 IYHLPDAESDEDEDFK 16 0 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 0 IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK ;;;; 326.85 1.22E-90 4075230000 3761080 3272590 1850100 5302110 2469690 3066570 4046410 3191670 2367840 5953220 TRUE FALSE FALSE 4597719.27 3655290.933 2534528.979 5591750.844 2223798.992 3227130.863 3181861.447 2408907.928 2843043.769 4469191.815 1.028758545 0.817886339 0.567111255 1.251177187 0.497584146 0.722083768 0.71195455 0.53900303 0.636142705 1 22.09158253 -5.814315861 24.99999997 0.664667576 0.884282613 0.224549389 0.205668513 149.340963 70607.41607 0.061408413 0.069630666 1.53E-06 5.814315861 0.219615037 IYHLPDAES(ph)DEDEDFK ddPTM_HeLa_A486_30min_R1 5 IYHLPDAESDEDEDFK 16 0 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 0 IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK ;;;; 324.63 3.35E-79 3529618000 4634150 4434480 1702600 2006620 2496740 4234150 4710900 4070100 3175970 7767020 TRUE FALSE FALSE 4309320.016 4083075.655 2361892.317 4671512.769 2183575.588 3711783.623 3532182.993 3143427.08 3451265.637 5822107.637 0.740164951 0.701305422 0.405676512 0.802374855 0.37504899 0.637532635 0.606684591 0.539912223 0.592786299 1 22.47311008 -10.25693614 3.678219839 1.00074361 0.596264549 0.466359691 0.128250461 167129230.2 238907440.8 1361323.182 0.030245605 5.53E-11 10.25693614 -0.404479062 IYHLPDAES(ph)DEDEDFKEQTR ddPTM_HeLa_A485_30min_R1 12 IYHLPDAESDEDEDFKEQTR 20 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 0 IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR ;;;;;;;;;;; 272.18 1.63E-72 2.05E+11 7732540 7022090 5493470 12026750 9360160 8761680 13027330 12879230 6778850 15542140 TRUE FALSE FALSE 9452616.846 7843262.341 7525733.155 12683740.9 8428229.605 9220428.017 10243934.52 9720578.649 8139303.016 11667770.53 0.810147647 0.672216026 0.645001814 1.087074936 0.722351334 0.790247631 0.87796846 0.833113629 0.697588541 1 23.47602558 IYHLPDAES(ph)DEDEDFKEQTR ddPTM_HeLa_A486_30min_R1 18 IYHLPDAESDEDEDFKEQTR 20 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 0 IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR ;;;;;;;;;;;;;;;;; 321.38 2.14E-102 2.40E+11 11325549 11303163 6060986 7272547 10673306 12821415 16720360 15379570 8689381 19560537 TRUE FALSE FALSE 10531686.5 10407459.2 8407962.098 16930856.95 9334560.437 11239639.18 12536749.08 11877977.64 9442583.541 14662451.22 0.718275979 0.7098035 0.573434958 1.154708493 0.636630281 0.766559357 0.855024095 0.810094947 0.64399761 1 23.80562297 -11.40763782 2.289202304 2.989345443 0.767995392 0.176071212 0.153375286 9361566.526 1160179.873 96301128.55 0.037949112 3.91E-12 11.40763782 -2.221350051 IYISLLK ddPTM_HeLa_A485_30min_R1 2 IYISLLK 7 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28 O60716-5 CTNND1 Catenin delta-1 0 0 ; ; 135.87 0.0047061 40248000 120387 128622 104581 117853 143949 134639 165102 172875 108881 180723 FALSE FALSE TRUE 147166.6728 143663.224 143269.8639 124291.011 129616.9321 141688.4898 129826.6089 130477.1352 130732.418 135672.0821 1.084723331 1.058900415 1.05600107 0.91611339 0.955369227 1.044345216 0.956914694 0.961709537 0.963591153 1 17.04976435 -5.132782959 6.58139393 0.971514608 1.068186543 0.653137328 0.031948244 0.152981678 7.497007499 0.008995765 0.015763624 7.37E-06 5.132782959 0.096671935 IYISLLK ddPTM_HeLa_A486_30min_R1 2 IYISLLK 7 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28 O60716-5 CTNND1 Catenin delta-1 0 0 ; ; 166.34 0.0012245 45916000 133207 139404 104777 50955 165141 145098 160231 157596 128857 166111 FALSE FALSE TRUE 123869.8772 128357.1193 145349.4604 118625.8151 144427.4759 127197.284 120139.509 121714.8311 140026.4285 124515.7244 0.994813127 1.030850681 1.167318113 0.952697466 1.15991355 1.021535911 0.964854115 0.977505706 1.124568236 1 16.92596842 -6.497524842 24.52708688 1.011762824 1.062454724 0.078423434 0.07372436 1439.822082 1392869.997 0.025328891 0.022241709 3.18E-07 6.497524842 0.0506919 IYITLTGVHQVPTENVQVHFTER ddPTM_HeLa_A485_30min_R1 2 IYITLTGVHQVPTENVQVHFTER 23 0 Q9HB71-3;Q9HB71 Q9HB71-3 CACYBP Calcyclin-binding protein 0 0 ; ; 312.01 5.72E-93 155673000 52911 79008 81517 38858 88924 73780 81562 87884 67082 69539 FALSE FALSE TRUE 64680.86941 88247.29832 111673.5305 40980.71415 80070.41433 77643.00671 64135.6124 66330.3112 80544.74209 52204.20707 1.238997258 1.69042503 2.139167258 0.785007884 1.533792367 1.487294053 1.228552563 1.270593213 1.542878373 1 15.67187846 -12.14574204 0.090000891 1.01E-11 1.845879848 0.140859215 0.332423785 265.3445454 2.47639792 61.63413795 9.189679028 7.15E-13 12.14574204 1.845879848 IYITLTGVHQVPTENVQVHFTER ddPTM_HeLa_A486_30min_R1 2 IYITLTGVHQVPTENVQVHFTER 23 0 Q9HB71-3;Q9HB71 Q9HB71-3 CACYBP Calcyclin-binding protein 0 0 ; ; 310.4 6.58E-93 131611000 70188 65009 82043 6996.1 90799 62547 73729 77548 76096 56523 FALSE FALSE TRUE 65268.18365 59857.45008 113812.2468 16287.27436 79410.14275 54830.58707 55281.22437 59892.01326 82692.06255 42369.2729 1.540460319 1.412756132 2.68619778 0.384412411 1.874238978 1.294112061 1.304748007 1.413571892 1.951698882 1 15.37073075 -5.252581284 24.99778154 1.356459055 1.833099726 0.193578419 0.519063647 1243.929593 3510395.283 0.136221112 0.231520586 5.59E-06 5.252581284 0.476640671 IYLYLTK ddPTM_HeLa_A485_30min_R1 1 IYLYLTK 7 0 P41250 P41250 GARS Glycine--tRNA ligase 0 0 105.12 0.025728 25954000 36330 74566 79453 34954 90482 61759 57908 71508 58643 53497 FALSE FALSE TRUE 44411.48316 83285.84506 108845.971 36863.44851 81473.29438 64992.60574 45535.48274 53970.55088 70412.11219 40161.18244 1.105831065 2.073789665 2.710228245 0.917887529 2.028657759 1.618294129 1.133818278 1.343848652 1.753238025 1 15.29351413 -6.553748251 7.042589348 1.339612173 1.793096571 0.154457645 0.50425186 0.372558262 60.8746375 0.192523744 0.150214158 2.79E-07 6.553748251 0.453484398 IYLYLTK ddPTM_HeLa_A486_30min_R1 2 IYLYLTK 7 0 P41250 P41250 GARS Glycine--tRNA ligase 0 0 ; ; 123.96 0.0090777 66959000 134376 149736 102333 45666 154485 129701 148506 142024 114857 139115 FALSE FALSE TRUE 124956.9363 137870.374 141959.0782 106312.7558 135108.0508 113699.8093 111348.2281 109688.2356 124812.8972 104279.6985 1.198286321 1.32212095 1.361329964 1.019496195 1.29563139 1.090335041 1.067784331 1.051865676 1.196905045 1 16.67009879 -5.749642225 0.836556692 1.078891061 1.291197965 0.38035533 0.099081096 0.693574567 1.048449516 0.05169275 0.08782159 1.78E-06 5.749642225 0.212306904 IYNISGNGS(ph)PLADSK ddPTM_HeLa_A485_30min_R1 4 IYNISGNGSPLADSK 15 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 IYNIS(0.001)GNGS(0.999)PLADSK;IYNIS(0.057)GNGS(0.942)PLADS(0.001)K;IYNIS(0.028)GNGS(0.972)PLADSK;IYNIS(0.003)GNGS(0.997)PLADSK ;;; 136.66 8.09E-06 1830200000 1075657 1069910 862690 1339360 1262100 1123650 1512330 1446380 1077950 1924370 TRUE FALSE FALSE 1314933.189 1195026.668 1181834.931 1412525.845 1136440.892 1182482.577 1189208.341 1091653.037 1294284.677 1444659.974 0.910202547 0.827202725 0.818071347 0.977756614 0.786649393 0.81851965 0.823175254 0.755647043 0.895909557 1 20.46229854 -4.249355068 22.50354297 0.84651919 0.910202707 0.031408107 0.075876538 1440.406408 2682132.708 0.018039429 0.260922349 5.63E-05 4.249355068 0.063683517 IYNISGNGS(ph)PLADSK ddPTM_HeLa_A486_30min_R1 2 IYNISGNGSPLADSK 15 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 IYNISGNGS(1)PLADSK;IYNIS(0.001)GNGS(0.999)PLADSK ; 264.66 1.27E-50 1888040000 2383000 2726100 1604180 981200 2475100 2717900 3289300 2958500 2129610 3312800 TRUE FALSE FALSE 2215964.006 2510073.908 2225361.457 2284283.187 2164649.879 2382593.132 2466282.349 2284914.134 2314206.309 2483253.317 0.892363252 1.010800586 0.896147583 0.919875218 0.871699179 0.959464391 0.993165833 0.920129299 0.931925186 1 21.24380001 IYNISGNGS(ph)PLADSKEIFLTVPVGGGESLR ddPTM_HeLa_A485_30min_R1 1 IYNISGNGSPLADSKEIFLTVPVGGGESLR 30 1 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 IYNIS(0.001)GNGS(0.99)PLADS(0.01)KEIFLTVPVGGGESLR 169.13 1.10E-14 142760000 40326 104670 71099 38030 130880 136810 187280 337200 68028 67045 TRUE FALSE FALSE 49296.37958 116910.246 97401.47878 40107.4826 117849.1277 143973.1601 147266.0981 254501.1713 81680.59561 50331.91537 0.979425862 2.322785555 1.935183234 0.796859851 2.341439359 2.860474492 2.925898945 5.056457109 1.622839008 1 15.61918588 -6.012314215 4.427779419 2.939773159 1.587766315 0.192895886 1.08019604 0.285391028 13.91221684 0.345712465 0.369148372 9.72E-07 6.012314215 -1.352006844 IYPTFLHLHGK ddPTM_HeLa_A485_30min_R1 2 IYPTFLHLHGK 11 0 Q08945;E9PMD4 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 ; ; 185.08 1.20E-09 44373000 73300 79295 81692 80334 105806 88100 113044 109693 78071 111404 FALSE FALSE TRUE 89605.33212 88567.86048 111913.2703 84722.443 95271.58313 92712.77977 88891.22592 82790.61976 93739.13359 83633.03304 1.071410768 1.059005721 1.338146737 1.013026073 1.139162119 1.108566513 1.062872201 0.989927266 1.120838623 1 16.35178526 -6.77811568 3.000528245 1.039227089 1.125990413 0.166197101 0.087283888 0.477933945 8.837156477 0.038789198 0.026215075 1.67E-07 6.77811568 0.086763323 IYPTFLHLHGK ddPTM_HeLa_A486_30min_R1 2 IYPTFLHLHGK 11 0 Q08945;E9PMD4 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 ; ; 185.08 1.20E-09 38643000 88511 101085 76835 32118 104767 88686 107137 106350 84345 105554 FALSE FALSE TRUE 82306.83597 93074.65645 106587.5697 74772.32715 91626.14595 77744.82301 80330.18942 82136.4266 91656.09251 79122.59136 1.040244443 1.176334784 1.347119298 0.945018684 1.158027617 0.982586916 1.015262367 1.038090704 1.1584061 1 16.27180206 -5.277212258 24.99192555 1.045256038 1.186743059 0.330625368 0.094755012 927.5571965 1469700.663 0.026398884 0.039306437 5.28E-06 5.277212258 0.141487021 IYPTIWWLFR ddPTM_HeLa_A485_30min_R1 1 IYPTIWWLFR 10 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 108.74 0.010846 132560000 10094 8337.5 10412 9020.3 12698 7649.2 13041 9235.8 6293.5 13061 FALSE FALSE TRUE 12339.37548 9312.498098 14263.83208 9513.056148 11433.74253 8049.700284 10254.68381 6970.705569 7556.547723 9805.13307 1.258460787 0.949757442 1.454731106 0.970211835 1.16609764 0.820967979 1.04584851 0.710924117 0.770672633 1 13.25932149 -6.220276537 1.177931368 0.836151215 1.182347585 0.423098889 0.165138786 0.436649502 1.252080889 0.079138707 0.074026854 6.02E-07 6.220276537 0.34619637 IYPTIWWLFR ddPTM_HeLa_A486_30min_R1 2 IYPTIWWLFR 10 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 241.52 8.99E-27 149833000 41033 75802 75281 33881 102703 79194 105737 97661 68754 66978 FALSE FALSE TRUE 38156.79859 69795.17345 104431.8193 78876.68025 89821.03207 69423.84947 79280.48423 75425.72222 74713.65208 50206.27285 0.760000622 1.390168389 2.080055208 1.571052296 1.789040034 1.382772421 1.579095195 1.502316702 1.48813381 1 15.61558001 -8.803954069 1.195485276 0.998769526 1.533709236 0.181768409 0.317750326 10.97739929 14.65097107 0.341398621 0.095202669 1.57E-09 8.803954069 0.53493971 IYQNIQDGS(ph)LDLNAAESGVQHKPSAPQGGR ddPTM_HeLa_A485_30min_R1 2 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR 30 1 P61106 P61106 RAB14 Ras-related protein Rab-14 1 0 IYQNIQDGS(1)LDLNAAESGVQHKPSAPQGGR;IYQNIQDGS(1)LDLNAAESGVQHKPSAPQGGR ; 152.77 6.50E-10 522680000 101840 108279 74427 103776 124425 112530 136613 146506 101230 193896 TRUE FALSE FALSE 124493.9567 120941.2871 101960.6445 109445.0201 112036.8101 118421.8968 107424.5165 110575.1738 121545.9325 145561.2956 0.855268264 0.830861574 0.700465354 0.751882701 0.76968819 0.813553468 0.738001926 0.75964681 0.835015462 1 17.15126727 -8.129483159 3.331344211 0.999928759 0.775770023 0.704636914 0.043387545 0.321924234 6.851551486 0.044088682 0.01168684 7.42E-09 8.129483159 -0.224158736 IYQNIQDGS(ph)LDLNAAESGVQHKPSAPQGGR ddPTM_HeLa_A486_30min_R1 2 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR 30 1 P61106 P61106 RAB14 Ras-related protein Rab-14 1 0 IYQNIQDGS(1)LDLNAAESGVQHKPSAPQGGR;IYQNIQDGS(1)LDLNAAESGVQHKPSAPQGGR ; 246.6 9.49E-51 370540000 268380 276160 235508 44520 298230 271670 276070 254253 269766 323310 TRUE FALSE FALSE 249567.9479 254276.0758 326703.0047 103644.8099 260823.2125 238154.1175 206994.366 196365.1422 293149.5341 242351.0716 1.029778603 1.049205494 1.348056778 0.427663923 1.076220587 0.982682337 0.854109555 0.810250769 1.209606923 1 17.88673894 IYQY(ph)IQSR ddPTM_HeLa_A485_30min_R1 8 IYQYIQSR 8 0 A0A2R8Y6L5;A0A2R8Y6I6;Q13627-5;Q13627-2;Q13627;A0A2R8Y443;A0A2R8YDF3;Q13627-4;Q13627-3;Q9Y463-2;Q9Y463-3;Q9Y463 A0A2R8Y6L5 DYRK1A;DYRK1B Dual specificity tyrosine-phosphorylation-regulated kinase 1A;Dual specificity tyrosine-phosphorylation-regulated kinase 1B 1 0 IYQY(1)IQSR;IY(0.001)QY(0.999)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR ;;;;;;; 205.58 1.05E-06 16222500000 2077026 2884480 2851160 2139090 3407570 2681870 3259230 3569260 2655670 3043530 TRUE FALSE FALSE 2539053.268 3221794.844 3905922.731 2255943.07 3068300.366 2822288.566 2562868.885 2693893.389 3188638.61 2284833.983 1.111263788 1.410078311 1.709499578 0.987355356 1.342898604 1.235226974 1.121687135 1.179032441 1.39556687 1 21.12365791 -5.277332153 24.95115668 1.194339487 1.410260385 0.249933736 0.181466297 1135.365824 1782486.198 0.050577979 0.075299649 5.28E-06 5.277332153 0.215920898 IYQY(ph)IQSR ddPTM_HeLa_A486_30min_R1 8 IYQYIQSR 8 0 A0A2R8Y6L5;A0A2R8Y6I6;Q13627-5;Q13627-2;Q13627;A0A2R8Y443;A0A2R8YDF3;Q13627-4;Q13627-3;Q9Y463-2;Q9Y463-3;Q9Y463 A0A2R8Y6L5 DYRK1A;DYRK1B Dual specificity tyrosine-phosphorylation-regulated kinase 1A;Dual specificity tyrosine-phosphorylation-regulated kinase 1B 1 0 IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR ;;;;;;; 221.7 8.61E-09 15916600000 2977410 3294960 2872420 998394 3780830 2834850 3386700 3511320 2878850 3314660 TRUE FALSE FALSE 2768708.934 3033855.37 3984697.95 2324311.688 3306603.047 2485115.03 2539311.839 2711869.088 3128391.036 2484647.561 1.114326626 1.221040528 1.603727632 0.93546937 1.330813713 1.000188143 1.022000818 1.091450204 1.259088446 1 21.24460979 -5.289400948 24.99958241 1.098395225 1.303832705 0.279739256 0.16257314 972.7538801 869707.3157 0.045267154 0.067156684 5.14E-06 5.289400948 0.20543748 IYS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 IYSPVR 6 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 IYS(1)PVR;IYS(1)PVR ; 98.009 0.012867 368150000 390800 435580 299920 130913 452010 414670 461310 450200 368000 502730 TRUE FALSE FALSE 363406.9381 401063.0544 416057.0561 304772.08 395314.691 363512.2315 345885.3588 347699.2878 399898.5363 376843.1358 0.964345383 1.064270558 1.104059001 0.808750515 1.049016563 0.964624792 0.917849699 0.922663185 1.061180365 1 18.52360459 IYSFTDNAPS(ph)PSIGGSSR ddPTM_HeLa_A485_30min_R1 3 IYSFTDNAPSPSIGGSSR 18 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 IYSFTDNAPS(0.999)PS(0.001)IGGSSR;IYSFTDNAPS(0.998)PS(0.002)IGGSSR;IYSFT(0.001)DNAPS(0.987)PS(0.012)IGGSSR ;; 303.79 4.10E-79 358290000 251915 270493 277732 305513 324999 215167 259447 222901 250508 377532 TRUE FALSE FALSE 307952.6227 302124.8034 380476.6242 322202.4016 292640.9584 226432.8114 204014.029 168234.1803 300782.6578 283420.2204 1.086558405 1.065995937 1.342446999 1.136836324 1.032533805 0.798929629 0.719828771 0.593585666 1.061260405 1 18.11258316 -6.082152606 2.67962439 0.800890255 1.16320019 0.526232852 0.14341359 0.206410606 2.907607495 0.050824988 0.052595179 8.28E-07 6.082152606 0.362309936 IYSFTDNAPS(ph)PSIGGSSR ddPTM_HeLa_A486_30min_R1 3 IYSFTDNAPSPSIGGSSR 18 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 IYSFTDNAPS(0.999)PS(0.001)IGGSSR;IYSFTDNAPS(0.984)PS(0.014)IGGS(0.001)S(0.001)R;IYSFTDNAPS(0.995)PS(0.004)IGGSSR ;; 242.59 2.07E-45 474356000 320148 383490 278107 110029 333692 333192 330246 338033 309839 336689 TRUE FALSE FALSE 297707.2784 353100.8558 385797.4784 256153.0726 291837.2378 292086.1587 247614.9578 261070.2651 336696.094 252379.8829 1.179599875 1.399084791 1.528637996 1.014950437 1.156341125 1.15732742 0.981120028 1.034433736 1.334084516 1 17.94523739 -5.270968961 24.91542036 1.09849975 1.372105282 0.494288891 0.126158788 516.4816708 1350358.611 0.035398026 0.053300232 5.36E-06 5.270968961 0.273605531 IYVDDGLISLQVK ddPTM_HeLa_A485_30min_R1 2 IYVDDGLISLQVK 13 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 328 4.77E-92 78832000 156117 177855 157309 166566 232524 209985 254559 276644 171645 264274 FALSE FALSE TRUE 190844.6881 198653.5951 215504.1453 175665.0788 209373.0941 220979.4899 200170.3901 208796.6252 206092.5771 198395.3554 0.96194131 1.001301642 1.086235839 0.885429392 1.05533264 1.113833988 1.008946957 1.052426983 1.038797388 1 17.59801873 IYVDDGLISLQVK ddPTM_HeLa_A486_30min_R1 3 IYVDDGLISLQVK 13 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;; ;; 351.42 1.59E-109 145051000 379451 419002 288609 180228 622281 421897 492938 488479 378629 477519 FALSE FALSE TRUE 352853.4444 385798.7555 400366.134 419579.8922 544228.7144 369847.6377 369599.6986 377262.9951 411448.8666 357945.1343 0.985775223 1.077815337 1.118512575 1.172190518 1.520424954 1.033252312 1.032559639 1.053968776 1.149474674 1 18.44937894 IYVLLR ddPTM_HeLa_A485_30min_R1 2 IYVLLR 6 0 P84090 P84090 ERH Enhancer of rudimentary homolog 0 0 ; ; 170.44 0.0030131 537350000 559610 632530 823820 619180 857410 527850 712370 560950 659010 834750 FALSE FALSE TRUE 684093.3139 706498.8812 1128585.3 653004.2356 772043.2499 555487.4098 560166.33 423376.133 791267.2622 626662.1874 1.09164607 1.12739989 1.800946862 1.042035484 1.231992715 0.886422415 0.893888831 0.675605041 1.26266955 1 19.25732842 -6.038499072 1.938136765 0.919564237 1.302229653 0.29177392 0.240631138 0.403052022 3.032502817 0.090386946 0.096671818 9.15E-07 6.038499072 0.382665415 IYVLLR ddPTM_HeLa_A486_30min_R1 2 IYVLLR 6 0 P84090 P84090 ERH Enhancer of rudimentary homolog 0 0 ; ; 157.88 0.010823 679510000 798350 944910 876660 289040 1092180 863660 957360 974340 855020 843790 FALSE FALSE TRUE 742389.7877 870031.8903 1216126.23 672899.7273 955188.6002 757110.4103 717818.4021 752504.0517 929133.822 632499.4918 1.173739738 1.375545596 1.922730762 1.063873941 1.510180818 1.197013468 1.134891666 1.189730682 1.46898746 1 19.2707048 -6.132840997 1.567058159 1.205205657 1.434247093 0.141246854 0.241263765 0.793553742 3.908483607 0.100860584 0.101070389 7.36E-07 6.132840997 0.229041436 IYVLLRR ddPTM_HeLa_A485_30min_R1 2 IYVLLRR 7 1 P84090 P84090 ERH Enhancer of rudimentary homolog 0 0 ; ; 201.2 1.08E-08 452250000 165588 394570 272930 79936 321800 388060 470660 712340 167044 122752 FALSE FALSE TRUE 202422.4793 440711.5292 373898.1646 84302.70127 289760.4621 408378.2215 370099.6461 537637.4981 200568.1986 92152.18548 2.196610729 4.782431658 4.057398776 0.914820423 3.144368857 4.431563065 4.016178717 5.834234916 2.176488789 1 16.49173076 -6.038900728 21.65276859 3.822320385 3.047052476 0.00070748 1.56310003 388.1507166 216048.9671 0.511164979 0.511387029 9.14E-07 6.038900728 -0.775267909 IYVLLRR ddPTM_HeLa_A486_30min_R1 2 IYVLLRR 7 1 P84090 P84090 ERH Enhancer of rudimentary homolog 0 0 ; ; 201.2 1.08E-08 196432000 185485 138805 156306 58031 249880 101587 179418 197180 100267 223220 FALSE FALSE TRUE 172483.4593 127805.5863 216831.8692 135099.1007 218537.7204 89054.2288 134525.7187 152286.4184 108958.2243 167324.2591 1.030833546 0.763819825 1.295878257 0.807408928 1.306073139 0.532225448 0.803982157 0.910127553 0.651180079 1 17.3522871 -6.266490279 24.999258 0.775415979 1.026619336 0.291761756 0.202905601 569.487756 2818651.735 0.066581144 0.060547278 5.41E-07 6.266490279 0.251203357 IYWGTATTGKPHVAYFVPMSK ddPTM_HeLa_A485_30min_R1 1 IYWGTATTGKPHVAYFVPMSK 21 1 P54577;A0A0C4DGZ5 P54577 YARS "Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase" 0 0 105.56 5.01E-06 9864400 27649 32678 29524 28501 44380 33661 42078 42620 31910 46113 FALSE FALSE TRUE 33799.42466 36499.40784 40446.1562 30057.93746 39961.37137 35423.43791 33087.69155 32167.37817 38314.0443 34617.87775 0.976357503 1.054351399 1.168360363 0.868277879 1.154356476 1.023270062 0.955797805 0.929212888 1.106770455 1 15.07922966 -6.528160538 24.59068745 0.991687429 1.046686349 0.053273967 0.090408096 337.3205855 1570454.711 0.033353145 0.025933735 2.96E-07 6.528160538 0.054998919 K(ac)AVTK(ac)AQK ddPTM_HeLa_A486_30min_R1 1 KAVTKAQK 8 2 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 K(1)AVTK(1)AQK 81.95 0.002339 0 8844.1 32611 13402 17313 20162 17464 21051 18945 13760 25844 FALSE TRUE FALSE 8224.174261 30026.78559 18591.61332 40305.53895 17633.09396 15309.46924 15783.81715 14631.63707 14952.72788 19372.49418 0.424528416 1.54997004 0.959691258 2.080554965 0.910212892 0.790268362 0.814754001 0.75527895 0.771853523 1 14.24172209 -5.976272841 24.99996318 0.814831753 1.284041445 0.205631383 0.398673025 329.9567754 347655.0876 0.11898198 0.134906752 1.06E-06 5.976272841 0.469209692 K(ac)AVTK(ac)AQK(ac)K ddPTM_HeLa_A485_30min_R1 2 KAVTKAQKK 9 3 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; K(1)AVTK(1)AQK(1)K;K(1)AVTK(1)AQK(1)K 212.21 5.76E-17 628220000 152510 183229 173969 198776 292050 556370 1277480 2218000 1727050 2495000 FALSE TRUE FALSE 186435.3233 204656.0377 238327.3726 209634.6296 262972.4766 585500.6729 1004535.962 1674032.022 2073653.094 1873042.417 0.099536093 0.109263963 0.127240777 0.111921987 0.14039857 0.312593387 0.536312447 0.893750193 1.107104182 1 20.83695214 -7.035306001 1.302782184 1.074252426 0.112979207 0.990068707 0.038730084 0.039697491 0.126701621 0.028957269 0.013124923 9.22E-08 7.035306001 -0.96127322 down K(ac)AVTK(ac)AQK(ac)K ddPTM_HeLa_A486_30min_R1 2 KAVTKAQKK 9 3 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; K(1)AVTK(1)AQK(1)K;K(1)AVTK(1)AQK(1)K 208.11 1.17E-16 1325210000 1238330 1638380 1375320 692570 1990090 1877820 2269300 2192500 1608820 2021050 FALSE TRUE FALSE 1151529.462 1508548.802 1907880.736 1612337.961 1740474.355 1646153.661 1701497.138 1693315.612 1748273.813 1514965.925 0.760102549 0.99576418 1.259355544 1.064273416 1.148853797 1.086594512 1.123125682 1.117725213 1.15400207 1 20.53085391 -4.380375482 3.334169977 1.121969485 0.750705967 0.738109247 0.064929246 0.118559319 2.133274356 0.015272014 0.092040928 4.17E-05 4.380375482 -0.371263518 K(ac)EESTTGNANLLEK ddPTM_HeLa_A485_30min_R1 1 KEESTTGNANLLEK 14 1 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9;F5H7D5;F5H797;F5H8B8;F5H692;A0A0A0MSJ1 F8WE42 NOL8 Nucleolar protein 8 0 1 K(1)EESTTGNANLLEK 98.531 0.012228 101150000 111460 235300 552450 20730 364210 135570 47273 54117 148630 15300 FALSE TRUE FALSE 136253.8925 262816.2882 756824.2444 21862.42741 327947.9736 142668.2356 37172.73737 40844.7209 178458.6777 11485.99158 11.8626147 22.88146273 65.89106734 1.90339922 28.55199496 12.42106392 3.236354225 3.556046566 15.53707196 1 13.48758779 -6.142744422 1.263963504 5.851230498 29.52714087 0.26672884 15.93055153 0.61023526 2.004220657 7.482021534 7.481395509 7.20E-07 6.142744422 23.67591037 K(ac)ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A486_30min_R1 1 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 34 2 Q01105-2 Q01105-2 SET Protein SET 0 1 K(0.973)ELNSNHDGADETSEK(0.027)EQQEAIEHIDEVQNEIDR 146.67 1.66E-20 7937800 5044.5 6533.9 4487.1 1991.2 8574.9 6993.8 8283.7 7219.9 7108.1 5929.6 FALSE TRUE FALSE 4690.9066 6016.129968 6224.625289 4635.61423 7499.356084 6130.976064 6211.030644 5576.086379 7724.235831 4444.789565 1.055372033 1.353524139 1.400431944 1.042932216 1.687224102 1.379362504 1.397373386 1.254522019 1.737818117 1 12.1178994 -4.262345355 4.670231831 1.373862639 1.03644158 0.143991611 0.222595046 0.339808851 20.3387162 0.052326623 0.375386644 5.47E-05 4.262345355 -0.337421058 K(ac)FAETQPK ddPTM_HeLa_A485_30min_R1 1 KFAETQPK 8 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 K(1)FAETQPK 100.25 0.0011488 0 8396.8 7311.1 11811 12052 14126 8053 11876 10959 11095 19728 FALSE TRUE FALSE 10264.63919 8166.069547 16180.3804 12710.37024 12719.56584 8474.642628 9338.595582 8271.288067 13321.66473 14810.17267 0.693080319 0.551382467 1.092518012 0.85821891 0.858839807 0.572217679 0.630552782 0.558486944 0.899494221 1 13.85430084 -6.231034883 24.91932471 0.698205862 0.814679889 0.027808252 0.183499269 1834.737947 1503740.08 0.061432391 0.061425197 5.87E-07 6.231034883 0.116474027 K(ac)FGLSVGHHLGK ddPTM_HeLa_A485_30min_R1 2 KFGLSVGHHLGK 12 1 B4DLR8;P15559-3;P15559-2;P15559;H3BNV2 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 1 ; K(1)FGLSVGHHLGK;K(1)FGLSVGHHLGK 103.44 0.0010436 25091000 17886 31458 39410 10171.8 41851 23744 26650 27778 30462 23293 FALSE TRUE FALSE 21864.67899 35136.73945 53989.39899 10727.45968 37684.16749 24987.19912 20956.00979 20965.40195 36575.44399 17486.48378 1.250375963 2.009365628 3.087493156 0.613471514 2.155045461 1.428943603 1.198411874 1.198948983 2.091640861 1 14.0939526 -5.270627703 24.99901149 1.418364084 2.10510702 0.235691455 0.601691815 990.0496863 2693663.288 0.16633554 0.25055345 5.36E-06 5.270627703 0.686742936 K(ac)FLDGDELTLADCNLLPK ddPTM_HeLa_A485_30min_R1 3 KFLDGDELTLADCNLLPK 18 1 A0A2R8Y4M1;A0A5F9ZHK1;A0A2R8YGW2;A0A2R8Y615;Q9NZA1-3;Q9NZA1-2;Q9NZA1;Q96NY7-2;Q96NY7 A0A2R8Y4M1 CLIC5;CLIC6 Chloride intracellular channel protein 5;Chloride intracellular channel protein 6 0 1 ;; K(1)FLDGDELTLADCNLLPK;K(1)FLDGDELTLADCNLLPK;K(1)FLDGDELTLADCNLLPK 212.24 5.68E-28 226049000 127955.3 76526.5 116320 218144 216640 106536.6 185523 150994 127109 307165 FALSE TRUE FALSE 156418.515 85475.60848 159351.6085 230060.6544 195070.5609 112114.6916 145884.4955 113962.4848 152618.6104 230594.4185 0.678327412 0.370675097 0.691047119 0.997685269 0.845946586 0.486198636 0.632645389 0.494211809 0.661848675 1 17.81499807 -4.916080836 10.95994367 0.711631768 0.525148594 0.159144599 0.183619451 0.858983775 106.5932712 0.050506136 0.105283588 1.21E-05 4.916080836 -0.186483174 K(ac)FLDGDELTLADCNLLPK ddPTM_HeLa_A486_30min_R1 2 KFLDGDELTLADCNLLPK 18 1 A0A2R8Y4M1;A0A5F9ZHK1;A0A2R8YGW2;A0A2R8Y615;Q9NZA1-3;Q9NZA1-2;Q9NZA1;Q96NY7-2;Q96NY7 A0A2R8Y4M1 CLIC5;CLIC6 Chloride intracellular channel protein 5;Chloride intracellular channel protein 6 0 1 ; K(1)FLDGDELTLADCNLLPK;K(1)FLDGDELTLADCNLLPK 222.75 2.38E-28 228070000 65493 203676 170432 94650 306430 261510 306210 300910 205960 179045 FALSE TRUE FALSE 60902.27891 187535.972 236427.8347 220349.9833 267994.6921 229247.555 229593.0192 232399.3618 223812.7786 134210.9666 0.453780197 1.397322266 1.761613381 1.641818019 1.996816645 1.708113434 1.710687472 1.731597407 1.667619154 1 17.03414304 -4.275727051 2.506033768 1.694157928 0.203857164 0.684392322 0.242251386 0.248118381 2.014123294 0.058065479 0.778786813 5.30E-05 4.275727051 -1.490300764 K(ac)FLPLFDR ddPTM_HeLa_A485_30min_R1 2 KFLPLFDR 8 1 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 1 ; K(1)FLPLFDR;K(1)FLPLFDR 154.49 0.00053232 92978000 78406 100863 127490 67705 98947 103571 120104 119814 80991 121968 FALSE TRUE FALSE 95847.1442 112658.0505 174653.8563 71403.55271 89095.48926 108993.8174 94442.79924 90429.42864 97245.15081 91563.62225 1.046781919 1.23038001 1.90745901 0.779824465 0.973044612 1.190361573 1.031444551 0.987613054 1.062050063 1 16.48248692 -5.300677925 24.9999603 1.010644976 1.378425484 0.389455704 0.224163047 563.8787069 359261.5093 0.063940643 0.09484096 5.00E-06 5.300677925 0.367780508 K(ac)FLPLFDR ddPTM_HeLa_A486_30min_R1 2 KFLPLFDR 8 1 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 1 ; K(1)FLPLFDR;K(1)FLPLFDR 128.38 0.0045989 98266000 70222 98373 127928 32619 116899 85728 102025 104402 92222 112423 FALSE TRUE FALSE 65299.80043 90577.56521 177465.1476 75938.68047 102236.4374 75151.75098 76497.26589 80631.94368 100215.8772 84271.54905 0.774873622 1.074829717 2.105872618 0.901118839 1.21317857 0.891780818 0.907747238 0.956810983 1.189201793 1 16.36275802 K(ac)FQGIKHECQANGPEDLNR ddPTM_HeLa_A485_30min_R1 2 KFQGIKHECQANGPEDLNR 19 2 P60981;P60981-2 P60981 DSTN Destrin 0 1 ; K(1)FQGIKHECQANGPEDLNR;K(1)FQGIKHECQANGPEDLNR 357.85 1.35E-122 177112000 100580 158763 135403 84554 219430 223360 303950 469930 139492 130887 FALSE TRUE FALSE 122953.674 177328.9518 185494.2043 89172.97092 197582.7787 235054.7842 239008.5995 354678.9307 167486.7649 98259.2797 1.251318699 1.804704373 1.88780342 0.90752722 2.010830726 2.392189165 2.432427758 3.609622743 1.704538904 1 16.58430604 -5.986059911 8.337076079 2.38212623 1.509235442 0.207176112 0.673658784 0.219781336 95.69675288 0.20527582 0.228573207 1.03E-06 5.986059911 -0.872890788 K(ac)FQGIKHECQANGPEDLNR ddPTM_HeLa_A486_30min_R1 2 KFQGIKHECQANGPEDLNR 19 2 P60981;P60981-2 P60981 DSTN Destrin 0 1 ; K(0.998)FQGIK(0.002)HECQANGPEDLNR;K(1)FQGIKHECQANGPEDLNR 323.47 4.40E-103 126147000 76284 79741 87951 45057 161945 82053 129819 139071 65055 98651 FALSE TRUE FALSE 70936.88553 73422.03275 122007.9826 104894.9731 141632.348 71930.13511 97336.91311 107407.5692 70694.01978 73948.14749 0.959278737 0.992885356 1.649912631 1.418493588 1.915292713 0.97271044 1.316286025 1.452471398 0.955994466 1 16.17422639 -7.769972228 24.7849419 0.977996904 1.34325245 0.193102301 0.291213041 314.223367 912670.1892 0.274241383 0.075386656 1.70E-08 7.769972228 0.365255547 K(ac)FTGIKHEWQVNGLDDIKDR ddPTM_HeLa_A486_30min_R1 1 KFTGIKHEWQVNGLDDIKDR 20 3 Q9Y281;Q9Y281-3 Q9Y281 CFL2 Cofilin-2 0 1 K(0.5)FTGIK(0.5)HEWQVNGLDDIKDR 54.637 0.020157 20796000 21290 31365 26572 22935 64308 42528 69866 67465 30281 47257 FALSE TRUE FALSE 19797.68094 28879.52317 36861.39002 53393.83907 56241.89099 37281.32775 52384.78783 52104.69225 32905.78146 35423.53961 0.558884887 0.815263621 1.040590252 1.507298245 1.587698226 1.052445017 1.478812914 1.470905867 0.928924151 1 15.11242076 -4.793488777 2.198781858 1.317413083 0.609258588 0.534566115 0.22465043 0.232004002 2.173523145 0.061740567 0.210340964 1.61E-05 4.793488777 -0.708154495 K(ac)FTNKEWETIR ddPTM_HeLa_A485_30min_R1 1 KFTNKEWETIR 11 2 E9PNF3;E9PLW6;Q9NRN7 E9PNF3 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0 1 K(0.998)FTNK(0.002)EWETIR 125.82 0.0060225 36876000 53308 73557 58357 46221 94370 82250 103390 117240 68118 74884 FALSE TRUE FALSE 65166.18069 82158.85129 79945.68274 48745.93619 84974.19145 86556.48282 81299.88188 88486.70617 81788.65778 56216.79694 1.159194124 1.461464469 1.422096012 0.867106254 1.511544522 1.53969076 1.446184883 1.57402611 1.454879364 1 15.77871364 K(ac)FTNKEWETIR ddPTM_HeLa_A486_30min_R1 1 KFTNKEWETIR 11 2 E9PNF3;E9PLW6;Q9NRN7 E9PNF3 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 0 1 K(1)FTNKEWETIR 120.53 0.0074698 30402000 74288 73919 58858 33098 107850 76302 98172 98221 64161 92596 FALSE TRUE FALSE 69080.79482 68061.38923 81649.39387 77053.81668 94322.44734 66888.63502 73608.32724 75858.22245 69722.52714 69409.3589 0.995266286 0.980579425 1.176345599 1.110135836 1.358929816 0.963683228 1.060495708 1.092910576 1.004511902 1 16.08284258 -7.456977704 1.035299737 1.002997856 1.105389177 0.093892125 0.108910231 1.393234604 2.708932316 0.104911761 0.038737596 3.49E-08 7.456977704 0.102391321 K(ac)GEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A485_30min_R1 1 KGEKEQQEAIEHIDEVQNEIDR 22 2 Q01105;A0A087X027;P0DME0 Q01105 SET;SETSIP Protein SET;Protein SETSIP 0 1 K(0.596)GEK(0.404)EQQEAIEHIDEVQNEIDR 169.42 2.64E-17 20824000 28897 28608 28520 29491 32348 23447 29493 25026 24257 40586 FALSE TRUE FALSE 35325.03796 31953.45674 39070.73482 31102.01865 29127.31954 24674.64866 23191.57961 18888.33426 29125.1574 30468.65713 1.159389395 1.048732033 1.282325462 1.020787313 0.955976478 0.809837091 0.761161856 0.619926706 0.955905516 1 14.8950383 -5.853925265 1.804968902 0.801187532 1.150398629 0.602074191 0.115383188 0.215932868 1.448323452 0.040651413 0.049974099 1.40E-06 5.853925265 0.349211096 K(ac)GSK(ac)K(ac)AINK ddPTM_HeLa_A485_30min_R1 1 KGSKKAINK 9 3 Q99879 Q99879 HIST1H2BM Histone H2B type 1-M 0 3 K(1)GSK(1)K(1)AINK 116.77 0.00063997 0 12729 11696 12538 21437 24763 20406 38389 55810 37147 73721 FALSE TRUE FALSE 15560.52214 13063.74546 17176.32795 22608.04903 22297.50877 21474.42661 30186.87654 42122.50999 44602.06217 55343.71143 0.281161522 0.236047513 0.310357356 0.408502582 0.402891461 0.388019272 0.54544366 0.76110743 0.805910211 1 15.75613178 -7.290778481 0.664110448 1.00835772 0.284383586 0.968666894 0.043204827 0.120532842 0.106672828 0.045232405 0.023014011 5.12E-08 7.290778481 -0.723974134 down K(ac)GSK(ac)K(ac)AVTK ddPTM_HeLa_A485_30min_R1 2 KGSKKAVTK 9 3 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; K(1)GSK(1)K(1)AVTK;K(1)GSK(1)K(1)AVTK 190.57 3.12E-11 3025300000 93891 119352 104794 149650 357390 1072470 3108700 6574900 4968100 8384800 FALSE TRUE FALSE 114776.729 133309.1782 143561.6614 157825.0006 321806.9967 1128622.871 2444500.849 4962395.466 5965152.1 6294623.671 0.018234089 0.02117826 0.022807028 0.025072984 0.051124104 0.179299499 0.388347418 0.78835459 0.947658258 1 22.5856887 -7.142004529 1.247775374 1.013526808 0.021622746 0.998657084 0.01429786 0.016175846 0.045673744 0.012319062 0.005132052 7.21E-08 7.142004529 -0.991904062 down K(ac)GSK(ac)K(ac)AVTK ddPTM_HeLa_A486_30min_R1 2 KGSKKAVTK 9 3 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; K(1)GSK(1)K(1)AVTK;K(1)GSK(1)K(1)AVTK 183.03 6.88E-11 7539000000 4251600 5617200 4490000 2274700 7691400 6024900 7244000 7064500 5830300 7318700 FALSE TRUE FALSE 3953584.795 5172072.615 6228648.246 5295616.557 6726672.893 5281609.095 5431474.581 5456067.567 6335675.098 5486049.883 0.720661474 0.942768062 1.135361212 0.965287715 1.226141401 0.962734428 0.990051986 0.994534808 1.154870122 1 22.38733631 -4.357966324 2.993008012 1.050872449 0.698541609 0.57838066 0.086294255 0.212169921 2.99575657 0.021423985 0.156385454 4.39E-05 4.357966324 -0.35233084 K(ac)HEAFESDLAAHQDR ddPTM_HeLa_A485_30min_R1 1 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;A0A494C1A0;P35609;P35609-2;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H7C5W8 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 1 K(1)HEAFESDLAAHQDR 173.03 3.54E-09 10553000 3168.8 5173.3 7054.5 4215.7 7566.2 3872.1 5926.1 6022.4 4833.8 8470.4 FALSE TRUE FALSE 3873.688628 5778.272433 9664.253112 4445.993016 6812.882561 4074.837169 4659.940323 4545.396957 5803.899322 6358.885166 0.609177321 0.908692685 1.519803057 0.699178063 1.071395753 0.640809995 0.732823475 0.714810354 0.912722776 1 12.63455814 -6.254038994 24.8726017 0.778195851 0.975134133 0.091628427 0.247521109 1182.598478 3974701.185 0.083014522 0.08141624 5.57E-07 6.254038994 0.196938282 K(ac)HEAFESDLAAHQDR ddPTM_HeLa_A486_30min_R1 1 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;A0A494C1A0;P35609;P35609-2;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H7C5W8 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 1 K(1)HEAFESDLAAHQDR 104.44 0.00045367 5829700 3461.8 4987.1 4302.7 1305.7 4999.7 3264.8 4057.6 3743.5 4020.2 3362.9 FALSE TRUE FALSE 3219.145697 4591.904033 5968.82067 3039.735586 4372.591006 2862.02217 3042.345563 2891.18677 4368.674173 2520.807951 1.277029333 1.821600107 2.367820471 1.205857664 1.734599022 1.13535907 1.206893037 1.146928614 1.733045221 1 11.29967049 -5.80646204 1.606815725 1.266946382 1.780938549 0.257580933 0.353366036 0.504268224 2.699872846 0.129977573 0.168933813 1.56E-06 5.80646204 0.513992167 K(ac)ISSIQSIVPALEIANAHR ddPTM_HeLa_A485_30min_R1 1 KISSIQSIVPALEIANAHR 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 K(1)ISSIQSIVPALEIANAHR 183.45 2.04E-17 15215000 11104 17059 17557 11968 14156 17641 17271 20654 12942 19017 FALSE TRUE FALSE 13574.04649 19053.90166 24052.06491 12621.78154 12746.57894 18564.65548 13580.90976 15588.57412 15539.34069 14276.41188 0.950802387 1.334642193 1.684741594 0.884100406 0.892841916 1.300372645 0.951283129 1.091911206 1.088462621 1 13.80134581 -5.293159083 24.97096363 1.035971867 1.324520393 0.312591851 0.199333044 786.4417324 619115.3356 0.057054468 0.08463427 5.09E-06 5.293159083 0.288548526 K(ac)ISSIQSIVPALEIANAHR ddPTM_HeLa_A486_30min_R1 2 KISSIQSIVPALEIANAHR 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; K(1)ISSIQSIVPALEIANAHR;K(1)ISSIQSIVPALEIANAHR 136.04 6.44E-07 20359600 12504.3 18187.7 18866.7 7240.6 22955.8 17345.7 21510.8 22050.8 16493.9 19616.3 FALSE TRUE FALSE 11627.81314 16746.44041 26172.39151 16856.48272 20076.46951 15205.76389 16128.57032 17030.31421 17923.60453 14704.2508 0.790779027 1.138884302 1.779920097 1.146368009 1.365351406 1.034106674 1.096864474 1.158189862 1.218940344 1 13.84394566 -6.267431774 24.64175609 1.111209905 1.262726718 0.079750611 0.237057601 1143.896567 4703882.394 0.085636172 0.077520789 5.40E-07 6.267431774 0.151516812 K(ac)KFQGIKHECQANGPEDLNR ddPTM_HeLa_A485_30min_R1 1 KKFQGIKHECQANGPEDLNR 20 3 P60981;P60981-2 P60981 DSTN Destrin 0 1 K(0.333)K(0.333)FQGIK(0.333)HECQANGPEDLNR 81.967 0.00055531 10146000 15928 21641 31540 19509 39694 27937 34612 40907 25027 29214 FALSE TRUE FALSE 19471.12865 24171.7267 43207.95849 20574.72727 35741.92599 29399.73812 27216.86345 30874.49411 30049.68934 21931.48744 0.887816146 1.102147164 1.970133517 0.938136427 1.629708248 1.34052641 1.240994872 1.407770184 1.370161938 1 14.42071604 -4.532221746 24.99879322 1.377390389 0.941398591 0.232085643 0.27824184 211.7477274 566567.7074 0.065412343 0.173556113 2.94E-05 4.532221746 -0.435991799 K(ac)KGAKLTPEEEEILNK ddPTM_HeLa_A485_30min_R1 1 KKGAKLTPEEEEILNK 16 3 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 1 K(0.333)K(0.333)GAK(0.333)LTPEEEEILNK 150.59 2.01E-08 33462000 104420 90623 53242 90491 104380 131470 175510 215280 78432 140360 FALSE TRUE FALSE 127647.8688 101220.5715 72938.43138 95434.29419 93987.5607 138353.5659 138010.8547 162482.2425 94172.58298 105370.8351 1.211415555 0.960612786 0.692207016 0.905699324 0.891969401 1.313015748 1.309763319 1.542003935 0.893725316 1 16.68511608 -6.257828694 24.79243239 1.251705769 0.919123952 0.30587711 0.205541486 304.1860685 2088668.563 0.068826232 0.066273108 5.52E-07 6.257828694 -0.332581817 K(ac)KGAKLTPEEEEILNK ddPTM_HeLa_A486_30min_R1 1 KKGAKLTPEEEEILNK 16 3 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 1 K(0.333)K(0.333)GAK(0.333)LTPEEEEILNK 118.47 9.62E-05 19553000 107990 91698 47166 38366 93039 93804 121650 113450 72106 143150 FALSE TRUE FALSE 100420.4587 84431.51652 65429.93835 89317.98691 81369.18107 82231.41621 91211.88332 87619.9116 78356.20614 107304.3082 0.935847407 0.786841814 0.60976059 0.83238025 0.758303021 0.76633844 0.85003002 0.816555393 0.730224233 1 16.71134848 -10.64642487 2.589995314 1.026125531 0.784678028 0.384583502 0.080630469 28076021.36 24008898.49 4887637.977 0.020704141 2.26E-11 10.64642487 -0.241447503 K(ac)LNVTEQEK ddPTM_HeLa_A485_30min_R1 1 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 K(1)LNVTEQEK 143.89 0.00074846 52567000 13088 11999 18536 15746 14682 12054 18626 14580 12369 31781 FALSE TRUE FALSE 15999.38045 13402.17867 25393.23775 16606.16411 13220.20853 12685.1288 14646.40294 11004.23214 14851.34484 23858.58159 0.670592273 0.561734092 1.064323026 0.696024785 0.554107061 0.531679922 0.61388406 0.461227425 0.622473922 1 14.54222066 -2.871393214 16.23078766 0.661420002 0.689043876 0 0.189838945 0 0 0.043921868 0 0.001344642 2.871393214 0.027623874 K(ac)LNVTEQEK ddPTM_HeLa_A486_30min_R1 2 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; K(1)LNVTEQEK;K(1)LNVTEQEK 218.58 1.64E-16 119671000 83559 101987 117301 35998.9 93098 113612 141413 130825 91426 220351 FALSE TRUE FALSE 77701.9456 93905.17869 162723.0886 83807.25848 81420.78074 99595.70656 106029.9717 101039.0034 99350.87929 165173.6754 0.470425723 0.568523879 0.985163576 0.507388713 0.492940419 0.602975664 0.641930207 0.61171372 0.601493422 1 17.33362425 -10.49782312 2.58464805 1.019454757 0.613479464 0.422747762 0.1369255 7075508.68 6887528.096 974540.3297 0.036538307 3.18E-11 10.49782312 -0.405975292 K(ac)QEAEENEITEK(ac)QQK ddPTM_HeLa_A485_30min_R1 1 KQEAEENEITEKQQK 15 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 0 2 K(1)QEAEENEITEK(1)QQK 92.063 0.0062232 25189000 14863 30905 34182 4033.2 36195 29852 23400 35021 39516 8241.1 FALSE TRUE FALSE 18169.22307 34519.07091 46827.34423 4253.523503 32591.29871 31415.00456 18400.39884 26432.04484 47446.49874 6186.745436 2.936798234 5.579520164 7.568978668 0.687521985 5.267923022 5.077791689 2.974164531 4.272366644 7.669056247 1 12.59496496 -5.210935129 24.99990303 4.059928857 5.383537748 0.085082899 2.197328565 1075.316065 532285.8979 0.583603191 1.010828422 6.15E-06 5.210935129 1.323608892 K(ac)QLATK ddPTM_HeLa_A485_30min_R1 2 KQLATK 6 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; K(1)QLATK;K(1)QLATK 127.84 0.024942 359860000 125109 174043 186276 203550 373840 366320 707240 2735600 959150 3330200 FALSE TRUE FALSE 152939.0654 194395.8149 255187.244 214669.4211 336619.177 385499.9488 556132.3964 2064689.811 1151642.607 2500042.428 0.061174588 0.077757006 0.102073165 0.085866311 0.134645386 0.154197363 0.222449183 0.825861909 0.460649225 1 21.25352115 -7.435546855 0.793904932 0.948057126 0.064600897 0.839866799 0.128854661 0.212571505 0.259477317 0.113205808 0.047972623 3.67E-08 7.435546855 -0.883456229 K(ac)QLATK ddPTM_HeLa_A486_30min_R1 2 KQLATK 6 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; K(1)QLATK;K(1)QLATK 134.06 0.021243 419750000 1009980 1012750 744350 372380 1187730 1046850 1249110 1104370 845930 1039340 FALSE TRUE FALSE 939185.6175 932496.0016 1032582.254 866919.459 1038753.828 917700.2906 936569.4663 852929.0592 919255.8935 779082.499 1.205502137 1.196915606 1.325382428 1.112744106 1.33330402 1.177924407 1.202144147 1.094786573 1.179921118 1 19.57141658 -8.111747683 0.539264263 0.997469644 1.235180663 0.50029909 0.067126059 0.856194432 0.580515709 0.073585743 0.032256214 7.73E-09 8.111747683 0.237711019 K(ac)QLATK(ac)AAR ddPTM_HeLa_A485_30min_R1 1 KQLATKAAR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 2 K(1)QLATK(1)AAR 185.6 1.01E-08 18391000000 758830 1639100 1712200 1210900 2545300 2351500 4568400 19590000 6708600 21565000 FALSE TRUE FALSE 927629.1156 1830778.487 2345614.031 1277048.401 2291880.995 2474620.904 3592324.02 14785521.78 8054954.485 16189242.37 0.057299106 0.113086113 0.144887202 0.07888253 0.141568144 0.152855881 0.221895746 0.913293003 0.497549811 1 23.94853214 -7.17422866 4.708660979 0.778046734 0.121560433 0.857805185 0.125885916 0.073961649 2.829216724 0.05799885 0.032274901 6.70E-08 7.17422866 -0.656486301 K(ac)QLATK(ac)AAR ddPTM_HeLa_A486_30min_R1 2 KQLATKAAR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 2 ; K(1)QLATK(1)AAR;K(1)QLATK(1)AAR 196.88 1.73E-11 20380000000 7165300 7469000 6688300 2342880 9195800 6488600 7824700 7390100 6564900 5787200 FALSE TRUE FALSE 6663049.472 6877129.238 9278188.879 5454343.043 8042377.017 5688102.503 5866877.299 5707535.555 7133950.818 4338047.452 1.535955876 1.585305213 2.138793774 1.257326736 1.853916331 1.311212606 1.352423496 1.315692283 1.644507327 1 22.0486144 -6.278836293 24.26862441 1.346226395 1.671962197 0.314662397 0.256906544 743.3150468 1036917.884 0.086847735 0.076785399 5.26E-07 6.278836293 0.325735802 K(ac)RGEKGEVVETVEDVIVR ddPTM_HeLa_A485_30min_R1 1 KRGEKGEVVETVEDVIVR 18 3 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 K(0.5)RGEK(0.5)GEVVETVEDVIVR 157.12 7.04E-14 15151000 8286.2 9836.6 11072 6417.6 14972 13209 23773 36598 32108 44799 FALSE TRUE FALSE 10129.4366 10986.9048 15167.99354 6768.177238 13481.33511 13900.60282 18693.70434 27622.28312 38551.78109 33631.43376 0.301189556 0.326685591 0.45100645 0.201245575 0.4008552 0.413321743 0.555840244 0.821323388 1.146302039 1 15.03752266 -7.257293644 1.495556725 1.081438638 0.34028251 0.934821768 0.077203331 0.092920177 0.37303757 0.060184595 0.023246276 5.53E-08 7.257293644 -0.741156128 down K(ac)RGEKGEVVETVEDVIVR ddPTM_HeLa_A486_30min_R1 2 KRGEKGEVVETVEDVIVR 18 3 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 ; K(0.5)RGEK(0.5)GEVVETVEDVIVR;K(0.5)RGEK(0.5)GEVVETVEDVIVR 203.89 2.08E-22 50597000 78427 52108 64165 44987 94134 94267 101495 104333 70014 131026 FALSE TRUE FALSE 72929.6723 47978.77231 89011.4064 104732.0095 82326.83596 82637.29598 76099.8775 80578.65347 76082.86989 98216.23676 0.742541913 0.488501432 0.906279953 1.066341096 0.838220224 0.841381208 0.774819724 0.820420901 0.774646559 1 16.58367393 -4.774567118 24.99992246 0.871696893 0.615521661 0.496501708 0.105491851 168.7748207 321409.0882 0.028382224 0.059651091 1.68E-05 4.774567118 -0.256175231 K(ac)SAPATGGVK(ac)KPHR ddPTM_HeLa_A485_30min_R1 1 KSAPATGGVKKPHR 14 3 Q5TEC6;Q71DI3;P68431;Q16695 Q5TEC6 HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.2;Histone H3.1;Histone H3.1t 0 2 K(1)SAPATGGVK(0.5)K(0.5)PHR 91.207 0.005662 11525000 5376.4 4672.1 6411.1 5904.2 11297 8094.2 14901 42599 27733 68671 FALSE TRUE FALSE 6572.361632 5218.461453 8782.832678 6226.731496 10172.23101 8517.999796 11717.27962 32151.52846 33298.75872 51552.5835 0.127488502 0.101225993 0.17036649 0.120784082 0.19731758 0.165229349 0.227287923 0.623664738 0.645918332 1 15.65375711 -7.609743409 0.97162663 0.98203283 0.128743289 0.963704264 0.055616539 0.081112482 0.149793765 0.049370896 0.017918079 2.46E-08 7.609743409 -0.853289541 down K(ac)SAPSTGGVK(ac)KPHR ddPTM_HeLa_A486_30min_R1 2 KSAPSTGGVKKPHR 14 3 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00 K7EK07 H3F3B;H3F3A Histone H3;Histone H3.3 0 2 ; K(1)SAPSTGGVK(0.5)K(0.5)PHR;K(1)SAPSTGGVK(0.5)K(0.5)PHR 143.38 6.68E-06 82940000 61974 77631 63770 15128.3 101410 76234 89001 89578 73587 81297 FALSE TRUE FALSE 57629.94263 71479.23683 88463.45182 35219.44694 88690.21219 66829.02417 66732.00844 69183.04487 79965.58041 60939.70205 0.945687962 1.172950219 1.45165547 0.57793927 1.455376531 1.096641794 1.095049798 1.135270481 1.31220826 1 15.89509483 K(ac)STGGK(ac)APR ddPTM_HeLa_A485_30min_R1 4 KSTGGKAPR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 2 ;;; K(1)STGGK(1)APR;K(1)STGGK(1)APR;K(1)STGGK(1)APR;K(1)STGGK(1)APR 153.97 1.62E-05 6206210000 926057.6 1809887.2 1747218.6 1194359.5 1907044.1 1190230.7 1923215 7101728 2230372.9 8159100 FALSE TRUE FALSE 1132055.918 2021537.764 2393587.468 1259604.335 1717172.093 1252549.339 1512304.404 5360018.073 2677988.283 6125186.527 0.184819828 0.330036931 0.39077789 0.205643425 0.28034609 0.204491624 0.246899323 0.875078342 0.437209262 1 22.54632235 -7.695898293 0.887872381 0.950866569 0.256996965 0.665879373 0.158269818 0.315525497 0.518815596 0.144661309 0.053750481 2.01E-08 7.695898293 -0.693869604 K(ac)STGGK(ac)APR ddPTM_HeLa_A486_30min_R1 2 KSTGGKAPR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 2 ; K(1)STGGK(1)APR;K(1)STGGK(1)APR 160.75 8.36E-06 3271300000 2066460 2239200 1672530 610570 2278900 1702750 1884650 1990840 1582410 1667490 FALSE TRUE FALSE 1921611.825 2061757.637 2320178.408 1421437.816 1993059.112 1492682.017 1413090.636 1537569.192 1719574.573 1249939.65 1.537363684 1.649485746 1.856232345 1.137205157 1.594524273 1.19420327 1.13052709 1.230114743 1.375726078 1 20.25342701 -5.675043484 1.036856045 1.199072928 1.66903226 0.502967142 0.185444464 0.452763465 1.028290418 0.079602543 0.135364904 2.11E-06 5.675043484 0.469959332 K(ac)TAKEHLRK ddPTM_HeLa_A485_30min_R1 1 KTAKEHLRK 9 3 H0YEP2;H0YED6;A0A0J9YW05;E9PNV8;A0A0J9YWV6;A0A0B4J2F6;H0YFN8;E9PJ88;E9PNS9;H0YF59;F8WB45;A0A0J9YW65;A0A0J9YW10;A0A0J9YYG0;H0YH09;A0A0B4J1W7;E9PKD4-2;Q9UND3;E9PKD4;F8WFD2;E9PIF3;E9PJI5;P0DM63 H0YEP2 NPIPA5;NPIPA3;NPIPA8;NPIPA2;NPIPA1;NPIPA7 Nuclear pore complex-interacting protein family member A5;Nuclear pore complex-interacting protein family member A1;Nuclear pore complex-interacting protein family member A3;Nuclear pore complex-interacting protein family member A2;Nuclear pore complex-interacting protein family member A7;Nuclear pore complex-interacting protein family member A8 0 1 K(1)TAKEHLRK 63.076 0.032492 0 13543 24257 21972 12311 20950 19206 19787 23529 18331 20404 FALSE TRUE FALSE 16555.59363 27093.64514 30100.35713 12983.51876 18864.14444 20211.59646 15559.34581 17758.47586 22009.86356 15317.65831 1.080817531 1.768785058 1.965075635 0.84761773 1.231529263 1.319496496 1.015778358 1.159346651 1.436894799 1 13.90290814 -5.264048035 24.99749101 1.1565892 1.621281964 0.393838278 0.261265785 230.2430667 2206315.201 0.072608471 0.113486203 5.44E-06 5.264048035 0.464692764 K(ac)YHNVGLSK ddPTM_HeLa_A485_30min_R1 1 KYHNVGLSK 9 1 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 1 K(1)YHNVGLSK 85.958 0.0050783 0 21444 32641 65959 26077 45029 37471 52486 60575 43184 70968 FALSE TRUE FALSE 26214.14382 36458.08101 90359.97888 27501.52048 40545.75465 39432.92362 41271.93733 45718.88627 51850.63269 53276.98367 0.492035059 0.684312033 1.696041567 0.516198902 0.761036978 0.740149327 0.774667304 0.858135786 0.973227633 1 15.70122478 -7.741577197 3.286642777 0.997768844 0.822341597 0.045932811 0.315935399 0.972884028 20.16344336 0.288163977 0.0835867 1.81E-08 7.741577197 -0.175427247 K(ac)YVIYIER ddPTM_HeLa_A485_30min_R1 2 KYVIYIER 8 1 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 1 ; K(1)YVIYIER;K(1)YVIYIER 108.98 0.018601 70847000 43644 55017 74191 53434 83572 59618 72283 73680 61936 75968 FALSE TRUE FALSE 53352.45723 61450.75957 101637.3382 56352.96412 75251.27824 62739.50629 56839.14655 55609.86447 74365.98709 57030.57569 0.935506201 1.07750551 1.782155221 0.988118451 1.319490069 1.10010298 0.996643395 0.975088605 1.303966972 1 15.79944798 -6.426232212 6.302887137 1.064334878 1.230292917 0.087076915 0.235708424 0.610225316 33.277506 0.084759157 0.074266017 3.75E-07 6.426232212 0.165958039 KAAAGPLDMSLPST(ph)PDIK ddPTM_HeLa_A485_30min_R1 1 KAAAGPLDMSLPSTPDIK 18 1 P17544;K7ELQ4;P17544-2;P17544-4 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 KAAAGPLDMSLPS(0.026)T(0.974)PDIK 100.94 0.00025925 139120000 309050 235420 161470 353590 281430 277810 386110 370710 184530 343250 TRUE FALSE FALSE 377797.1063 262950.3211 221204.4723 372905.7264 253409.841 292355.702 303614.4443 279792.7912 221563.4784 257684.092 1.466125065 1.020436764 0.858432783 1.447142986 0.983412825 1.134550836 1.17824287 1.085797687 0.859825985 1 17.97524395 -7.610568822 5.269170283 0.93347224 1.142033775 0.190992149 0.181661684 0.357501851 16.15911477 0.12641203 0.04527213 2.45E-08 7.610568822 0.208561535 KAAAGPLDMSLPST(ph)PDIK ddPTM_HeLa_A486_30min_R1 2 KAAAGPLDMSLPSTPDIK 18 1 P17544;K7ELQ4;P17544-2;P17544-4 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 KAAAGPLDMSLPS(0.152)T(0.848)PDIK;KAAAGPLDMSLPS(0.121)T(0.879)PDIK ; 122.3 1.62E-05 289280000 830480 646970 332870 318640 615900 690450 826750 770610 490340 1011560 TRUE FALSE FALSE 772267.6406 595701.741 461766.1786 741810.0232 538648.079 605269.299 619888.4055 595158.9253 532843.066 758258.7918 1.018475023 0.785617981 0.608982294 0.978307184 0.710374986 0.798235781 0.817515619 0.78490211 0.702719272 1 19.5323308 -4.260852998 23.89412999 0.78932136 1.018475118 0.251592532 0.112811077 33.84621082 1378535.411 0.026054894 0.150124779 5.48E-05 4.260852998 0.229153758 KAALLAQYADVT(ph)DEEDEADEKDDSGATTMNIGSDK ddPTM_HeLa_A485_30min_R1 2 KAALLAQYADVTDEEDEADEKDDSGATTMNIGSDK 35 2 Q96MW1 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 1 0 KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK;KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK ; 282.6 9.63E-79 8205700000 612450 333600 168152 1171400 534750 508170 1045580 913500 374500 1472290 TRUE FALSE FALSE 748687.3896 372611.6181 230358.4222 1235390.616 481508.4124 534776.9954 822183.2914 689462.6927 449658.7149 1105275.198 0.677376449 0.337121125 0.208417254 1.11772219 0.435645722 0.483840582 0.743872017 0.623792784 0.406829643 1 20.0759742 -11.584207 2.121750005 8.631404729 0.560419556 0.231264691 0.240982715 5974459.12 278783.4914 220456764.9 0.062655137 2.60E-12 11.584207 -8.070985174 KAALLAQYADVT(ph)DEEDEADEKDDSGATTMNIGSDK ddPTM_HeLa_A486_30min_R1 5 KAALLAQYADVTDEEDEADEKDDSGATTMNIGSDK 35 2 Q96MW1 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 1 0 KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK;KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK;KAALLAQYADVT(0.998)DEEDEADEKDDSGAT(0.001)T(0.001)MNIGSDK;KAALLAQY(0.006)ADVT(0.992)DEEDEADEKDDS(0.002)GATTMNIGSDK;KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK ;;;; 345.88 3.12E-148 4828890000 427981 388043 118917.6 379342 290926 534332 754345 638679 268874 989618 TRUE FALSE FALSE 397981.742 357293.0595 164965.6794 883127.3469 254435.3483 468411.5505 565599.9024 493265.734 292180.2148 741811.2115 0.536500036 0.481649581 0.222382295 1.190501482 0.34299205 0.631443072 0.762458013 0.664947801 0.393874089 1 19.50069255 -14 0.26267697 3.632330848 0.55694947 0.187439319 0.255648786 347.8219993 3.41307568 496.2799408 0.328670063 1.00E-14 14 -3.075381378 KAALS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KAALSSPR 8 1 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 KAALS(0.5)S(0.5)PR 54.416 0.026922 841920000 1034300 1347500 1104000 847820 1477400 1317600 1547000 1754900 1200300 1322500 TRUE FALSE FALSE 1264376.467 1505078.403 1512415.541 894134.2598 1330304.869 1386587.499 1216470.812 1324508.023 1441189.2 992825.0888 1.273513815 1.515955248 1.523345409 0.900595956 1.339918666 1.396608037 1.225261958 1.334079928 1.451604332 1 19.92118005 -11.16070649 2.531355288 0.165606182 1.327012214 0.251450517 0.170257311 10169715.32 2221925.76 49537340.97 0.044404407 6.91E-12 11.16070649 1.161406032 KAAS(ph)LGSSQSSR ddPTM_HeLa_A485_30min_R1 1 KAASLGSSQSSR 12 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 KAAS(0.998)LGS(0.002)SQSSR 114.01 0.00018323 178590000 81336 98129 80196 88190 108360 110320 139840 168570 87110 116830 TRUE FALSE FALSE 99428.91259 109604.3329 109863.8376 93007.59639 97571.29792 116096.1846 109962.0416 127227.9432 104592.178 87706.4311 1.133655894 1.249672704 1.252631492 1.06044215 1.11247598 1.323690671 1.253751181 1.450611336 1.192525755 1 16.42039501 -6.262347942 24.98835835 1.272881209 1.166076723 0.08063925 0.120424061 156.9921765 4317706.923 0.040284092 0.037529745 5.47E-07 6.262347942 -0.106804485 KAAS(ph)LGSSQSSR ddPTM_HeLa_A486_30min_R1 1 KAASLGSSQSSR 12 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 KAAS(0.998)LGS(0.001)SQSSR 125.45 2.46E-05 219670000 135070 129240 87019 56452 150660 121090 161910 158690 95711 185910 TRUE FALSE FALSE 125602.2905 118998.5517 120715.0872 131423.1089 131762.818 106151.147 121398.4055 122559.7512 104007.3065 139356.9259 0.901299233 0.853912003 0.86622955 0.94306837 0.94550606 0.761721359 0.871132918 0.879466524 0.746337549 1 17.08842518 -6.231484339 24.99973986 0.845410857 0.899625301 0.109083269 0.070525744 1518.426204 1267241.449 0.022481249 0.022478724 5.87E-07 6.231484339 0.054214444 KAAS(ph)LMNLENI ddPTM_HeLa_A486_30min_R1 1 KAASLMNLENI 11 1 D6RBP0;Q96NL6-3;Q96NL6-2;Q96NL6 D6RBP0 SCLT1 Sodium channel and clathrin linker 1 1 0 KAAS(1)LMNLENI 97.767 0.0045733 114100000 497800 557070 350000 204000 564860 499750 621300 579610 418600 641930 TRUE FALSE FALSE 462906.7906 512925.7444 485529.3733 474922.3096 494009.9917 438095.9261 465844.1686 447645.4558 454884.585 481186.5497 0.962011076 1.06596027 1.009025239 0.986981681 1.026649627 0.910449235 0.968115524 0.93029503 0.94533936 1 18.87623679 -6.248828548 24.96748782 0.947562999 1.011880606 0.439669394 0.033332296 646.426521 1279825.081 0.010453525 0.010389843 5.64E-07 6.248828548 0.064317607 KAAS(ph)LSSIPSGIER ddPTM_HeLa_A485_30min_R1 2 KAASLSSIPSGIER 14 1 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 1 0 KAAS(0.914)LS(0.085)SIPSGIER;KAAS(0.995)LS(0.004)S(0.001)IPSGIER ; 143.46 5.72E-08 287500000 411540 432370 214251 390290 310170 540460 563520 639210 356420 840520 TRUE FALSE FALSE 503085.6532 482931.9104 293511.3606 411610.5544 279288.3857 568757.6499 443119.3485 482442.7453 427950.2247 630993.8326 0.79729092 0.765351237 0.465157257 0.652321042 0.442616665 0.901368002 0.702256227 0.764576007 0.678216177 1 19.26726638 -6.277148643 24.98773619 0.787880082 0.625057813 0.307797074 0.136644733 1193.667827 1898686.502 0.048281381 0.042726033 5.28E-07 6.277148643 -0.162822269 KAAS(ph)LTEDR ddPTM_HeLa_A485_30min_R1 2 KAASLTEDR 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.82)LT(0.18)EDR;KAAS(0.951)LT(0.049)EDR ; 175.21 1.47E-06 1160730000 1162520 1319850 1023160 1680160 1241130 1535420 1884010 1785390 1230960 2097840 TRUE FALSE FALSE 1421118.563 1474194.976 1401669.461 1771942.886 1117558.739 1615812.217 1481475.873 1347520.303 1478002.381 1574887.096 0.902362187 0.936063912 0.890012665 1.125123757 0.709611973 1.025986067 0.940687035 0.855629782 0.938481485 1 20.58681697 KAAS(ph)LTEDR ddPTM_HeLa_A486_30min_R1 2 KAASLTEDR 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.99)LT(0.01)EDR;KAAS(0.998)LT(0.002)EDR ; 155.08 2.50E-05 973970000 1403720 1549860 744940 488480 1139970 1501850 1714850 1616050 1374950 2187760 TRUE FALSE FALSE 1305326.477 1427043.449 1033400.718 1137206.126 996984.3328 1316567.017 1285776.392 1248110.693 1494131.773 1639930.656 0.795964434 0.870185239 0.630149034 0.693447691 0.607942982 0.802818712 0.784043147 0.761075286 0.911094483 1 20.64520338 -7.888291881 1.210603299 1.003659059 0.731163655 0.564702755 0.076401804 0.353664469 1.14473749 0.077378614 0.024581375 1.29E-08 7.888291881 -0.272495403 KAAS(ph)LTEDRDR ddPTM_HeLa_A485_30min_R1 2 KAASLTEDRDR 11 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.983)LT(0.017)EDRDR;KAAS(0.982)LT(0.018)EDRDR ; 79.875 0.0051305 7259500000 1042470 1225210 1103710 1567830 1771850 1794390 2307610 2606880 1460850 2312910 TRUE FALSE FALSE 1274363.855 1368487.652 1512018.258 1653476.583 1595438.393 1888341.486 1814570.272 1967538.593 1754029.195 1736344.103 0.733935084 0.788143116 0.870805652 0.952274713 0.918849202 1.087538744 1.045052227 1.133150157 1.010185246 1 20.72762145 -5.145522049 0.715092715 1.066368051 0.691913527 0.851861602 0.046758303 0.395142873 0.321144291 0.02301453 0.100491963 7.15E-06 5.145522049 -0.374454523 KAAS(ph)PS(ph)PQS(ph)VR ddPTM_HeLa_A485_30min_R1 2 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KAAS(1)PS(1)PQS(1)VR;KAAS(1)PS(1)PQS(1)VR ; 116.87 0.00012474 800830000 1173740 1228580 1046450 1857180 1671830 1417110 2105390 2126650 1107180 2265130 TRUE FALSE FALSE 1434834.414 1372251.744 1433575.401 1958633.041 1505376.735 1491307.688 1655556.227 1605085.753 1329380.87 1700474.778 0.84378459 0.806981534 0.843044202 1.151815403 0.885268488 0.876994889 0.9735847 0.943904475 0.781770414 1 20.69750618 -5.029999386 24.99820824 0.942870279 0.82529038 0.248952764 0.09063899 914.4957579 762040.5005 0.024587398 0.04266769 9.33E-06 5.029999386 -0.117579899 KAAS(ph)PS(ph)PQS(ph)VR ddPTM_HeLa_A486_30min_R1 4 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KAAS(1)PS(1)PQS(1)VR;KAAS(1)PS(1)PQS(1)VR;KAAS(1)PS(1)PQS(1)VR;KAAS(1)PS(1)PQS(1)VR ;;; 137.21 1.49E-05 1270620000 2036190 2144430 1319620 1248920 2288310 2505590 3100270 3089240 1832430 3237800 TRUE FALSE FALSE 1893463.596 1974497.557 1830612.205 2907548.877 2001288.822 2196475.781 2324549.655 2385887.49 1991266.508 2427033.805 0.780155427 0.813543492 0.754259047 1.197984499 0.824582178 0.905004197 0.957773909 0.983046666 0.820452728 1 21.21076277 KAAS(ph)PS(ph)PQSVR ddPTM_HeLa_A485_30min_R1 3 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KAAS(0.981)PS(0.942)PQS(0.077)VR;KAAS(0.999)PS(0.916)PQS(0.085)VR;KAAS(0.998)PS(0.986)PQS(0.016)VR ;; 103.79 0.00038314 2546840000 1237240 1423460 1170300 1727000 1753280 1574990 2158900 2244510 1384350 2286430 TRUE FALSE FALSE 1512459.77 1589921.265 1603242.67 1821341.637 1578717.287 1657454.041 1697633.378 1694040.403 1662176.347 1716465.08 0.881147999 0.926276499 0.934037452 1.061100315 0.919749144 0.965620601 0.989028789 0.986935548 0.968371781 1 20.71100908 -4.827621581 2.585974293 0.981040382 0.896471368 0.461152158 0.035232036 0.24901197 3.303308051 0.009442405 0.027427394 1.49E-05 4.827621581 -0.084569014 KAAS(ph)PS(ph)PQSVR ddPTM_HeLa_A486_30min_R1 5 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KAAS(0.997)PS(0.968)PQS(0.034)VR;KAAS(0.989)PS(0.69)PQS(0.321)VR;KAAS(0.975)PS(0.72)PQS(0.305)VR;KAAS(1)PS(0.999)PQS(0.001)VR;KAAS(0.998)PS(0.996)PQS(0.005)VR ;;;; 152.88 2.32E-07 1763700000 1712160 1719570 1017460 826180 1730530 1729250 2240430 2190590 1268450 2329930 TRUE FALSE FALSE 1592146.426 1583305.011 1411447.761 1923388.793 1513470.791 1515912.717 1679850.717 1691840.477 1378400.267 1746500.363 0.911621011 0.90655865 0.808157725 1.101281645 0.866573419 0.867971601 0.961838173 0.968703193 0.789235603 1 20.73603551 -6.85465585 0.00625911 1.842323483 2.55E-05 0.029299888 0.087444305 20939.50478 86.90861703 12681.11174 12892.28067 1.40E-07 6.85465585 -1.842298016 KAAS(ph)PSPQS(ph)VR ddPTM_HeLa_A485_30min_R1 5 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KAAS(0.682)PS(0.321)PQS(0.998)VR;KAAS(0.996)PS(0.243)PQS(0.761)VR;KAAS(0.984)PS(0.438)PQS(0.578)VR;KAAS(0.986)PS(0.021)PQS(0.993)VR;KAAS(0.685)PS(0.37)PQS(0.945)VR ;;;; 131.72 1.78E-05 5771640000 1567630 1609460 1267870 1935680 2034260 1800720 2612880 2669820 1478210 2548890 TRUE FALSE FALSE 1916343.885 1797672.347 1736907.873 2041421.297 1831721.932 1895002.915 2054616.843 2015042.459 1774873.188 1913498.632 1.001486938 0.939468843 0.907713151 1.06685276 0.957263257 0.990334084 1.073748791 1.053067102 0.927553936 1 20.86778144 -5.253422606 24.99256549 1.011703043 0.948547567 0.242138568 0.048778029 857.6689789 2673805.032 0.01342528 0.02275432 5.58E-06 5.253422606 -0.063155476 KAAS(ph)PSPQS(ph)VR ddPTM_HeLa_A486_30min_R1 4 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KAAS(0.982)PS(0.018)PQS(1)VR;KAAS(0.753)PS(0.251)PQS(0.996)VR;KAAS(0.985)PS(0.032)PQS(0.983)VR;KAAS(0.987)PS(0.013)PQS(1)VR ;;; 110.12 0.00024788 1156100000 2291170 2384320 1517830 1092360 2480940 2625650 3206050 3174970 1884060 3299830 TRUE FALSE FALSE 2130570.815 2195377.8 2105574.425 2543069.285 2169757.371 2301723.999 2403862.38 2452098.64 2047371.838 2473531.09 0.861347902 0.887548092 0.851242353 1.028112925 0.877190257 0.93054177 0.97183431 0.991335282 0.827712191 1 21.2381406 -5.21200604 24.99736104 0.943795202 0.868796275 0.293716592 0.056671958 497.7833667 251717.3147 0.014735661 0.025522866 6.14E-06 5.21200604 -0.074998927 KAAS(ph)PSPQSVR ddPTM_HeLa_A485_30min_R1 9 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KAAS(0.728)PS(0.266)PQS(0.006)VR;KAAS(0.934)PS(0.066)PQSVR;KAAS(0.9)PS(0.1)PQSVR;KAAS(0.838)PS(0.162)PQSVR;KAAS(0.882)PS(0.118)PQSVR;KAAS(0.854)PS(0.146)PQSVR;KAAS(0.66)PS(0.34)PQSVR;KAAS(0.963)PS(0.037)PQSVR;KAAS(0.824)PS(0.175)PQS(0.001)VR ;;;;;;;; 171.46 1.75E-08 24487230000 4403430 5277280 4368690 5082730 6258840 5877540 7556450 8144460 4646740 7184430 TRUE FALSE FALSE 5382957.812 5894411.99 5984850.227 5360386.67 5635687.913 6185278.906 5941952.727 6147018.415 5579298.096 5393483.821 0.998048384 1.09287655 1.109644606 0.993863493 1.044906799 1.14680587 1.101691027 1.139712034 1.034451624 1 22.36278603 KAAS(ph)PSPQSVR ddPTM_HeLa_A486_30min_R1 8 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KAAS(0.9)PS(0.1)PQSVR;KAAS(0.796)PS(0.204)PQSVR;KAAS(0.497)PS(0.497)PQS(0.006)VR;KAAS(0.853)PS(0.147)PQSVR;KAAS(0.898)PS(0.102)PQSVR;KAAS(0.785)PS(0.215)PQSVR;KAAS(0.798)PS(0.202)PQSVR;KAAS(0.981)PS(0.019)PQSVR ;;;;;;; 163.8 3.66E-08 26147770000 9515620 9245580 5860000 3815120 9634000 9172820 11168520 11039030 6835420 11067420 TRUE FALSE FALSE 8848624.177 8512926.569 8129148.936 8881792.165 8425613.887 8041170.731 8374038.167 8525683.849 7427919.709 8296065.995 1.066604844 1.02614017 0.979879975 1.070602882 1.015615581 0.969275164 1.009398692 1.02767792 0.895354462 1 22.98399594 -6.521325384 0.698639436 0.96981756 1.035536755 0.27697391 0.040899284 1.062477651 1.083297566 0.032932146 0.026172126 3.01E-07 6.521325384 0.065719194 KAASDSCKEPVANS(ph)R ddPTM_HeLa_A485_30min_R1 2 KAASDSCKEPVANSR 15 2 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 KAASDSCKEPVANS(1)R;KAASDSCKEPVANS(1)R ; 163.85 4.29E-12 188634000 447240 454600 300710 485400 493190 581950 783590 822260 459630 766540 TRUE FALSE FALSE 546726.995 507761.5155 411955.1426 511916.1729 444086.2719 612420.0021 616169.5952 620599.4457 551873.525 575455.6851 0.950076625 0.882364235 0.715876397 0.889584005 0.771712372 1.064234863 1.07075073 1.078448718 0.959020024 1 19.13434531 -6.269445628 24.89847986 1.041660163 0.839814751 0.659509722 0.069078227 346.4092017 1077288.386 0.024317462 0.021812149 5.38E-07 6.269445628 -0.201845412 KAASDSCKEPVANS(ph)R ddPTM_HeLa_A486_30min_R1 1 KAASDSCKEPVANSR 15 2 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 KAASDSCKEPVANS(1)R 90.972 0.00081173 82093000 95907 101380 57581 47239 93112 119610 128200 123870 92969 155330 TRUE FALSE FALSE 89184.41456 93346.27958 79877.90527 109974.7793 81433.02473 104853.7343 96123.00404 95667.50506 101027.6278 116434.357 0.765963045 0.801707348 0.686033808 0.944521722 0.699389998 0.900539472 0.82555533 0.821643264 0.86767884 1 16.8291573 -13.99999998 0.113326802 1.627137186 0.707236681 0.436226859 0.071693149 148.4217698 1.107388931 21.32716966 0.77258355 1.00E-14 13.99999998 -0.919900505 KAASLT(ph)EDR ddPTM_HeLa_A486_30min_R1 1 KAASLTEDR 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.266)LT(0.734)EDR 166.7 7.79E-06 679770000 1205500 1204100 583800 382560 846180 1186100 1364000 1245800 1089200 1816600 TRUE FALSE FALSE 1121000.675 1108682.731 809862.9947 890619.0135 740044.2141 1039771.041 1022712.773 962158.5356 1183612.733 1361711.536 0.823229183 0.814183255 0.594739028 0.654043819 0.543466215 0.763576583 0.751049504 0.706580293 0.869209595 1 20.37698969 -7.961921272 1.912804117 1.001459223 0.698940945 0.554407298 0.085535512 0.263214718 2.180483067 0.088023111 0.024945551 1.09E-08 7.961921272 -0.302518278 KAASLT(ph)EDRDR ddPTM_HeLa_A485_30min_R1 5 KAASLTEDRDR 11 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.096)LT(0.904)EDRDR;KAAS(0.094)LT(0.906)EDRDR;KAAS(0.016)LT(0.984)EDRDR;KAAS(0.049)LT(0.951)EDRDR;KAAS(0.186)LT(0.814)EDRDR ;;;; 149.3 3.44E-06 27205340000 10171600 11371440 10199940 14678820 14710450 14143390 22218590 24478740 12293470 19466770 TRUE FALSE FALSE 12434237.33 12701230.99 13973322.26 15480686.77 13245825.95 14883916.03 17471406.74 18475290.63 14760656.67 14614062.5 0.850840574 0.869110214 0.956155912 1.059300709 0.906375346 1.018465333 1.195520187 1.264213194 1.010031035 1 23.80085395 -6.554660759 4.369790845 1.138389725 0.935410293 0.481149585 0.091219336 0.172020597 7.597913012 0.036355909 0.028528826 2.79E-07 6.554660759 -0.202979432 KAASLT(ph)EDRDR ddPTM_HeLa_A486_30min_R1 7 KAASLTEDRDR 11 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.121)LT(0.879)EDRDR;KAAS(0.11)LT(0.89)EDRDR;KAAS(0.087)LT(0.913)EDRDR;KAAS(0.085)LT(0.915)EDRDR;KAAS(0.058)LT(0.942)EDRDR;KAAS(0.124)LT(0.876)EDRDR;KAAS(0.144)LT(0.856)EDRDR ;;;;;; 165.86 2.63E-07 33857700000 14600760 15652900 9761170 7225440 16538690 15761280 21829440 21937960 13375400 21581440 TRUE FALSE FALSE 13577322.12 14412507.2 13540956.44 16821189.47 14464253.28 13816813.52 16367483.22 16943165.41 14534790.44 16177306.95 0.839281975 0.890908928 0.83703403 1.039801589 0.894107612 0.854086132 1.011755744 1.04734153 0.898467865 1 23.94746813 -1 0.219851335 1.001393323 0.123084009 0.308658914 0.066433859 63.95093321 0.816708424 0.106714187 19.93169766 0.1 1 -0.878309314 KAASPSPQS(ph)VRR ddPTM_HeLa_A485_30min_R1 1 KAASPSPQSVRR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KAAS(0.176)PS(0.042)PQS(0.781)VRR 59.862 0.021574 41582000 24698 55795 30289 16007 50497 64392 76930 136300 28909 25413 TRUE FALSE FALSE 30191.98489 62319.7399 41494.16153 16881.42188 45469.34137 67763.46555 60493.27704 102872.2113 34710.77113 19078.00679 1.582554468 3.266574993 2.174973622 0.884862977 2.383338148 3.55191537 3.170838427 5.392188629 1.819412872 1 14.21962283 -6.122983776 5.071346805 3.265980631 2.035458681 0.110926962 1.221660346 0.39656207 14.77435788 0.397275448 0.399327471 7.53E-07 6.122983776 -1.230521951 KAAVLS(ph)DS(ph)EDEEK ddPTM_HeLa_A485_30min_R1 2 KAAVLSDSEDEEK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KAAVLS(1)DS(1)EDEEK;KAAVLS(1)DS(1)EDEEK ; 102.89 9.62E-05 0 983770 683360 365530 1646710 739000 728370 1307630 1063150 533210 1963600 TRUE FALSE FALSE 1202606.243 763273.0076 500754.758 1736665.598 665422.5652 766506.3269 1028244.168 802410.7955 640220.3561 1474110.657 0.815818159 0.517785421 0.339699571 1.17811074 0.451406115 0.519978825 0.697535265 0.544335523 0.434309563 1 20.4914134 -10.14032556 4.969207721 1.000007084 0.610170265 0.206666987 0.228641901 5.15E-05 8.91E-06 0.215995914 0.052383906 7.24E-11 10.14032556 -0.389836819 KAAVLS(ph)DS(ph)EDEEK ddPTM_HeLa_A486_30min_R1 1 KAAVLSDSEDEEK 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KAAVLS(1)DS(1)EDEEK 76.704 0.00081564 0 553090 461840 154330 359390 309470 662780 747620 631950 323550 1218300 TRUE FALSE FALSE 514321.2472 425242.1164 214090.7091 836678.0826 270653.3869 581012.9423 560557.5685 488068.7804 351595.5745 913229.7502 0.563189326 0.465646368 0.234432473 0.916174799 0.296369437 0.636217712 0.613818777 0.534442489 0.385002322 1 19.80061833 -11.08404472 2.385421973 1.763803003 0.51861715 0.386764923 0.182755646 8232078.274 2753359.319 34134046.35 0.043041645 8.24E-12 11.08404472 -1.245185854 KAAVLS(ph)DS(ph)EDEEKASAK ddPTM_HeLa_A485_30min_R1 1 KAAVLSDSEDEEKASAK 17 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KAAVLS(1)DS(1)EDEEKASAK 138.35 2.37E-06 221310000 216640 125360 76877 478220 248390 209560 447250 411560 145040 717480 TRUE FALSE FALSE 264830.8206 140019.7615 105317.0014 504343.9477 223659.4194 220532.2376 351691.3838 310624.2647 174148.1976 538625.4402 0.491679005 0.259957572 0.1955292 0.936353744 0.415241098 0.409435242 0.652942393 0.576698094 0.323319666 1 19.03892285 -14 0.227378141 3.707361435 0.418634286 0.36761437 0.20427461 180.2127838 1.804615759 224.8805914 0.373081387 1.00E-14 14 -3.288727149 KAAVLS(ph)DS(ph)EDEEKASAK ddPTM_HeLa_A486_30min_R1 1 KAAVLSDSEDEEKASAK 17 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KAAVLS(1)DS(1)EDEEKASAK 169.05 2.93E-12 314870000 403270 316990 87743 421110 276610 505850 841650 725790 220740 982960 TRUE FALSE FALSE 375002.8555 291870.5579 121719.4394 980365.3617 241914.9945 443443.3701 631060.2679 560543.4609 239873.9209 736820.418 0.508947426 0.396121702 0.16519553 1.330535009 0.32832287 0.601833716 0.856464143 0.760759945 0.32555276 1 19.49095351 -14 0.05791106 2.329491882 4.44E-10 0.130910803 0.318312506 927.7676352 3.927035388 182.7824028 32.32595401 1.00E-14 14 -2.329491882 KAAVLS(ph)DS(ph)EDEEKASAKK ddPTM_HeLa_A485_30min_R1 1 KAAVLSDSEDEEKASAKK 18 3 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KAAVLS(1)DS(1)EDEEKASAKK 84.573 0.00068393 117360000 73186 47407 24274 152170 90916 103810 237830 234990 58768 257130 TRUE FALSE FALSE 89465.97321 52950.83626 33253.96273 160482.6618 81864.08381 109245.3311 187015.6776 177358.334 70562.19855 193032.2231 0.463476884 0.274310866 0.172271563 0.831377576 0.424095431 0.565943495 0.968831393 0.918801696 0.365546215 1 17.55848217 -5.789183847 0.813366605 0.795491659 0.303110229 0.37639003 0.22967861 0.726611094 1.046310484 0.127522087 0.208607168 1.62E-06 5.789183847 -0.492381429 KACEVALEEIKAETEKQS(ph)PPHGEAK ddPTM_HeLa_A486_30min_R1 1 KACEVALEEIKAETEKQSPPHGEAK 25 3 Q9Y6D6;E5RJN9 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 0 KACEVALEEIKAET(0.192)EKQS(0.808)PPHGEAK 82.492 0.0022226 117160000 94805 84529 46683 75987 93458 127290 188660 172620 80581 198950 TRUE FALSE FALSE 88159.65907 77830.61419 64759.90781 176901.5762 81735.62618 111586.254 141455.2726 133318.1943 87565.82596 149131.6251 0.591153346 0.521892081 0.434246645 1.186211014 0.548077084 0.748240046 0.948526327 0.893963264 0.587171406 1 17.1862267 -5.212847347 24.99985445 0.828141118 0.516376694 0.404266677 0.182161655 402.592987 207127.2359 0.047906821 0.082976825 6.13E-06 5.212847347 -0.311764424 KADRDQS(ph)PFSK ddPTM_HeLa_A485_30min_R1 2 KADRDQSPFSK 11 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 KADRDQS(0.998)PFS(0.002)K;KADRDQS(0.997)PFS(0.003)K ; 91.076 0.0024516 231290000 377930 725120 550970 287160 1277790 1146640 1683320 3295300 608160 573140 TRUE FALSE FALSE 461999.2247 809916.4763 754796.7308 302846.8237 1150568.741 1206676.297 1323664.931 2487122.508 730212.1336 430266.7459 1.073750712 1.882358988 1.754253002 0.703858308 2.67408242 2.804484216 3.076382136 5.780420012 1.697114966 1 18.71487182 -5.926499291 5.036808916 3.142213476 1.424795263 0.250106069 1.214111739 0.255716121 11.9746034 0.375747736 0.426634582 1.18E-06 5.926499291 -1.717418213 KADS(ph)DS(ph)EDKGEESKPK ddPTM_HeLa_A485_30min_R1 1 KADSDSEDKGEESKPK 16 3 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 2 0 KADS(1)DS(1)EDKGEESKPK 91.725 0.00056643 283870000 148910 84740 29800 692890 131920 93175 316870 214720 65030 829290 TRUE FALSE FALSE 182034.5158 94649.60586 40824.26008 730740.8262 118785.5816 98053.49892 249168.1359 162059.5833 78080.92451 622563.265 0.292395209 0.152032109 0.065574476 1.173761555 0.19080082 0.157499654 0.400229422 0.260310225 0.125418458 1 19.24786093 -10.21325373 4.591710905 1.000163365 0.319243354 0.317162015 0.302239663 836963075.7 441.9606813 1470196.843 0.074041948 6.12E-11 10.21325373 -0.680920011 KADS(ph)DS(ph)EDKGEESKPK ddPTM_HeLa_A486_30min_R1 1 KADSDSEDKGEESKPK 16 3 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 2 0 KADS(1)DS(1)EDKGEESKPK 123.43 1.50E-05 341160000 263260 178050 34277 934610 109540 405260 742090 562880 136820 1583700 TRUE FALSE FALSE 244806.8335 163940.6696 47549.97237 2175819.313 95800.47178 355263.1416 556411.233 434724.5116 148679.6678 1187131.212 0.206217165 0.138098188 0.040054521 1.832838098 0.080699143 0.2992619 0.468702387 0.366197525 0.125242826 1 20.17904797 -10.68151999 2.912245583 1.069841471 0.408758442 0.116502149 0.49835967 439345177.9 424661795.6 227582308.9 0.133823465 2.08E-11 10.68151999 -0.661083029 KADS(ph)DSEDKGEESKPK ddPTM_HeLa_A485_30min_R1 5 KADSDSEDKGEESKPK 16 3 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 0 KADS(0.998)DS(0.002)EDKGEESKPK;KADS(0.984)DS(0.016)EDKGEESKPK;KADS(0.934)DS(0.066)EDKGEESKPK;KADS(0.949)DS(0.051)EDKGEESKPK;KADS(0.845)DS(0.155)EDKGEESKPK ;;;; 167.51 5.07E-12 32389130000 4730200 1849140 817775 16733650 2940560 2819600 9511580 6965780 1837345 20201360 TRUE FALSE FALSE 5782416.671 2065380.838 1120304.003 17647766.93 2647787.521 2967229.896 7479353.231 5257411.533 2206083.288 15165532.73 0.381286749 0.136189139 0.073871721 1.16367603 0.17459245 0.19565616 0.493181042 0.346668437 0.145466917 1 23.85429284 -10.54348512 3.046032842 1.026401771 0.35045885 0.299247294 0.300330325 231890869.8 264187052.1 50317708.12 0.079828235 2.86E-11 10.54348512 -0.675942922 KADS(ph)DSEDKGEESKPK ddPTM_HeLa_A486_30min_R1 10 KADSDSEDKGEESKPK 16 3 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 0 KADS(0.999)DS(0.001)EDKGEESKPK;KADS(0.996)DS(0.004)EDKGEESKPK;KADS(0.97)DS(0.03)EDKGEESKPK;KADS(0.997)DS(0.003)EDKGEESKPK;KADS(0.998)DS(0.002)EDKGEESKPK;KADS(0.976)DS(0.024)EDKGEESKPK;KADS(0.997)DS(0.003)EDKGEESKPK;KADS(0.701)DS(0.299)EDKGEESKPK;KADS(0.998)DS(0.002)EDKGEESKPK;KADS(0.998)DS(0.002)EDKGEESKPK ;;;;;;;;; 194.24 7.22E-18 87218430000 9442620 5703010 1456097 18770920 4182329 15130920 25046150 18798620 5159466 43228410 TRUE FALSE FALSE 8780741.1 5251082.718 2019936.754 43699650.39 3657742.298 13264220.93 18779338.36 14518584.6 5606692.667 32403734.77 0.270979292 0.162051774 0.062336541 1.348599188 0.112880269 0.40934235 0.579542404 0.448052816 0.173026125 1 24.94965677 -11.17343384 2.377579457 2.534169323 0.406565819 0.206524632 0.354476136 36835905.38 8426145.797 304215028.3 0.087649179 6.71E-12 11.17343384 -2.127603504 KADS(ph)EEERDDVSTLGSMLPAK ddPTM_HeLa_A486_30min_R1 1 KADSEEERDDVSTLGSMLPAK 21 2 J3KQH6;P78364;H0YGZ1;H0YGK7 J3KQH6 PHC1 Polyhomeotic-like protein 1 1 0 KADS(0.754)EEERDDVS(0.121)T(0.121)LGS(0.004)MLPAK 67.995 0.002965 80872000 199090 192470 78019 114190 167610 219860 299650 275210 170560 415010 TRUE FALSE FALSE 185134.8191 177217.9762 108230.0462 265840.0908 146586.7909 192735.9086 224674.4006 212550.6908 185344.2781 311088.7947 0.595118893 0.569670072 0.347907247 0.854547304 0.471205628 0.619552719 0.722219522 0.683247659 0.595792202 1 18.24696691 -14 0.166073756 2.517239485 0.508539091 0.485622301 0.125674566 111.0611293 1.036920746 55.35420862 0.470147675 1.00E-14 14 -2.008700394 KADSDS(ph)EDKGEESKPK ddPTM_HeLa_A485_30min_R1 1 KADSDSEDKGEESKPK 16 3 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 1 0 KADS(0.012)DS(0.988)EDKGEESKPK 107.33 0.00022775 4281300000 455530 182380 107280 1536200 274190 394140 960450 667380 244420 2048900 TRUE FALSE FALSE 556861.0769 203707.7545 146967.3363 1620118.716 246890.6809 414776.5609 755242.0113 503704.0086 293472.852 1538146.937 0.362033733 0.132437123 0.095548307 1.053292554 0.160511766 0.269659908 0.491007714 0.327474571 0.19079637 1 20.5527619 -10.99942167 4.307230254 1.649843768 0.346418179 0.358940668 0.263547905 0.077520937 1.04E-05 0.012028079 0.061774671 1.00E-11 10.99942167 -1.30342559 KADSLS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 KADSLSSPR 9 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 KADS(0.02)LS(0.49)S(0.49)PR 60.255 0.01833 304880000 417580 544290 716800 151090 780880 465760 465140 531210 471390 454100 TRUE FALSE FALSE 388309.7984 501158.4781 994364.1566 351745.1557 682934.749 408299.2667 348757.0523 410265.0792 512250.4647 340390.4043 1.140777747 1.472304953 2.921246146 1.033358024 2.006327853 1.199502869 1.024579565 1.20527804 1.504891026 1 18.37683084 -6.284613561 22.0235741 1.189537859 1.730497298 0.21382996 0.505700656 286.0131874 271810.0167 0.177718604 0.156911753 5.19E-07 6.284613561 0.540959439 KADSLSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KADSLSSPR 9 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 KADS(0.172)LS(0.172)S(0.655)PR 59.367 0.019391 273370000 240370 359090 473570 211660 494150 329760 308190 369410 362580 323130 TRUE FALSE FALSE 293839.4772 401082.4518 648763.2499 223222.4498 444950.6909 347025.7237 242342.6888 278811.6183 435346.4802 242579.6378 1.211311386 1.653405271 2.674434078 0.92020275 1.834245838 1.43056411 0.999023212 1.149361178 1.794653847 1 17.88809893 -6.175997245 1.347245229 1.251360246 1.721707061 0.1330072 0.478288739 0.873020506 3.220539391 0.219926757 0.213229915 6.67E-07 6.175997245 0.470346814 KADT(ph)EEEFLAFR ddPTM_HeLa_A485_30min_R1 2 KADTEEEFLAFR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 KADT(1)EEEFLAFR;KADT(1)EEEFLAFR ; 150.27 1.11E-07 110170000 140153 131677 104238 153407 218410 96303 156800 164763 102152 261893 TRUE FALSE FALSE 171329.5513 147075.4797 142799.9739 161787.236 196664.3335 101345.2762 123298.3991 124354.6159 122652.9694 196607.8949 0.871427627 0.748064974 0.726318615 0.822892875 1.000287062 0.515469006 0.627128423 0.632500623 0.623845596 1 17.58496173 -6.269775731 24.99746747 0.653528758 0.822458331 0.22521458 0.137812029 865.2470431 2594531.797 0.046520706 0.04169243 5.37E-07 6.269775731 0.168929573 KADTEGKS(ph)PSHSSSNRPFTPPT(ph)STGGSK ddPTM_HeLa_A486_30min_R1 1 KADTEGKSPSHSSSNRPFTPPTSTGGSK 28 3 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 KADT(0.292)EGKS(0.705)PS(0.029)HS(0.103)S(0.095)S(0.088)NRPFT(0.266)PPT(0.203)S(0.187)T(0.033)GGSK 69.885 0.0034131 120480000 326090 302920 121730 18768 250540 256140 316430 282920 272550 130910 TRUE FALSE FALSE 303232.7749 278915.516 168867.116 43692.85248 219114.937 224540.051 237255.8671 218505.2921 296174.8534 98129.28392 3.090135409 2.842327029 1.720863633 0.445258039 2.232920982 2.288206355 2.417788632 2.226708311 3.018210687 1 16.58239611 -5.969756323 24.99983902 2.278800624 1.971070959 0.003367641 0.812790205 990.60883 818846.7614 0.267364247 0.303159273 1.07E-06 5.969756323 -0.307729665 KADTT(ph)TPTTSAITASR ddPTM_HeLa_A486_30min_R1 1 KADTTTPTTSAITASR 16 1 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 KADT(0.144)T(0.495)T(0.354)PT(0.005)T(0.001)S(0.001)AITASR 66.636 0.010281 183970000 257500 267820 179070 97258 290560 276900 287350 309130 230000 316820 TRUE FALSE FALSE 239450.5797 246596.9678 248410.6997 226421.5391 254115.2554 242738.8933 215451.9907 238747.8473 249936.5852 237486.2098 1.008271511 1.038363314 1.046000523 0.953409208 1.0700211 1.022117846 0.907218953 1.005312466 1.052425677 1 17.85748422 -6.574085066 24.99999694 0.987822931 1.023906362 0.110377517 0.043775224 222.8316262 108789.143 0.016881729 0.013076535 2.67E-07 6.574085066 0.036083431 KADTTT(ph)PTTSAITASR ddPTM_HeLa_A485_30min_R1 1 KADTTTPTTSAITASR 16 1 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 KADT(0.005)T(0.016)T(0.97)PT(0.005)T(0.002)S(0.002)AITASR 77.66 0.0045129 181110000 254450 250550 222670 315770 400750 318910 400140 423320 282420 457230 TRUE FALSE FALSE 311051.5247 279849.643 305044.8991 333019.7155 360849.9229 335607.6345 314646.8202 319500.1063 339099.1035 343250.9757 0.906192689 0.815291617 0.888693465 0.970193063 1.051271368 0.9777325 0.916666936 0.930806112 0.987904267 1 18.3889043 -5.185337966 3.85568451 0.97443134 0.859654717 0.596794251 0.04034411 0.168742141 4.820584958 0.012077301 0.021801902 6.53E-06 5.185337966 -0.114776623 KADTTT(ph)PTTSAITASR ddPTM_HeLa_A486_30min_R1 1 KADTTTPTTSAITASR 16 1 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 KADT(0.006)T(0.021)T(0.964)PT(0.006)T(0.002)S(0.001)AITASR 79.293 0.0038392 172810000 302560 312330 180150 116830 324980 329610 349380 353650 245570 383670 TRUE FALSE FALSE 281352.1064 287579.8333 249908.9046 271986.1443 284217.9781 288946.0694 261961.4286 273131.6151 266856.2053 287596.5347 0.97828754 0.999941928 0.868956592 0.945721215 0.988252443 1.004692458 0.910864343 0.949704124 0.927883938 1 18.13368677 KADTTTPTPTAILAPGS(ph)PAS(ph)PPGSLEPK ddPTM_HeLa_A485_30min_R1 2 KADTTTPTPTAILAPGSPASPPGSLEPK 28 1 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;U3KQA6;A0A140T9V2;E9PIQ3;A0A0G2JHL0;A0A140T9F7;U3KPW0;H0YDJ7 P25440-2 BRD2 Bromodomain-containing protein 2 2 0 KADTTTPTPTAILAPGS(1)PAS(0.953)PPGS(0.047)LEPK;KADTTTPTPTAILAPGS(1)PAS(0.955)PPGS(0.045)LEPK ; 96.027 0.00075202 840930000 257738 202688 141163 351190 281390 309804 499600 489020 242538 517220 TRUE FALSE FALSE 315070.9289 226390.5984 193385.068 370374.6204 253373.8236 326024.8584 392856.3786 369087.0782 291213.1519 388286.5727 0.811439156 0.583050289 0.498047271 0.953869246 0.652543357 0.839650097 1.011769158 0.950553288 0.749995422 1 18.56676229 -6.013236291 1.032067807 0.923860259 0.65252394 0.37312971 0.136015077 0.554717986 1.266541368 0.068778219 0.080055001 9.70E-07 6.013236291 -0.271336319 KADTTTPTPTAILAPGS(ph)PAS(ph)PPGSLEPK ddPTM_HeLa_A486_30min_R1 2 KADTTTPTPTAILAPGSPASPPGSLEPK 28 1 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;U3KQA6;A0A140T9V2;E9PIQ3;A0A0G2JHL0;A0A140T9F7;U3KPW0;H0YDJ7 P25440-2 BRD2 Bromodomain-containing protein 2 2 0 KADTTTPTPTAILAPGS(1)PAS(1)PPGSLEPK;KADTTTPTPTAILAPGS(1)PAS(0.99)PPGS(0.01)LEPK ; 185.96 9.61E-21 788150000 568510 547500 226334 258125 553380 678600 803830 766670 442040 856560 TRUE FALSE FALSE 528660.3848 504114.106 313976.5862 600928.0449 483969.9203 594881.2315 602703.232 592115.9773 480356.3831 642071.8007 0.823366459 0.785136655 0.489005413 0.93592032 0.753762928 0.92650266 0.938685099 0.922195892 0.748134995 1 19.29237511 -5.323851167 24.99999805 0.884031407 0.707762248 0.376525359 0.111817765 240.245061 96233.16237 0.031178423 0.046245082 4.74E-06 5.323851167 -0.176269159 KADTTTPTPTAILAPGS(ph)PASPPGSLEPK ddPTM_HeLa_A485_30min_R1 2 KADTTTPTPTAILAPGSPASPPGSLEPK 28 1 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;U3KQA6;A0A140T9V2;E9PIQ3;A0A0G2JHL0;A0A140T9F7;U3KPW0;H0YDJ7 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 KADTTTPTPTAILAPGS(0.982)PAS(0.017)PPGSLEPK;KADTTTPTPTAILAPGS(0.991)PAS(0.009)PPGSLEPK ; 129.59 3.13E-06 963100000 366411 290902 254153 479180 423840 476290 622440 635700 379800 760670 TRUE FALSE FALSE 447917.8628 324920.4584 348174.7709 505356.3901 381641.0014 501227.8079 489450.6091 479793.5783 456022.3763 571048.9681 0.784377326 0.568988785 0.609710884 0.884961568 0.668315718 0.877731746 0.857107948 0.84019691 0.798569653 1 19.12325494 -5.924246041 0.170123545 1.054577099 0.465948995 0.485369511 0.09189433 7.889088725 0.505792181 0.443232182 1.222934718 1.19E-06 5.924246041 -0.588628104 KADTTTPTPTAILAPGS(ph)PASPPGSLEPK ddPTM_HeLa_A486_30min_R1 3 KADTTTPTPTAILAPGSPASPPGSLEPK 28 1 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;U3KQA6;A0A140T9V2;E9PIQ3;A0A0G2JHL0;A0A140T9F7;U3KPW0;H0YDJ7 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 KADTTTPTPTAILAPGS(0.989)PAS(0.011)PPGS(0.001)LEPK;KADTTTPTPTAILAPGS(0.97)PAS(0.028)PPGS(0.001)LEPK;KADTTTPTPTAILAPGS(0.987)PAS(0.012)PPGSLEPK ;; 103.96 6.01E-09 1237890000 1158710 1101830 511760 484656 1029930 1259270 1552570 1460600 881173 1734340 TRUE FALSE FALSE 1077490.413 1014516.978 709927.1774 1128303.661 900746.5757 1103914.071 1164100.565 1128053.265 957553.7851 1300049.975 0.828806917 0.780367676 0.546076836 0.867892529 0.692855346 0.849132027 0.89542755 0.867699924 0.73655152 1 20.31013565 -6.357018734 6.097435999 0.864628813 0.741492061 0.282968939 0.100724077 0.338524585 17.8705627 0.035156773 0.030915595 4.40E-07 6.357018734 -0.123136752 KADVSEQVSNGPVESVTLENS(ph)PLVWK ddPTM_HeLa_A485_30min_R1 1 KADVSEQVSNGPVESVTLENSPLVWK 26 1 Q9NRL3;Q9NRL3-3;M0R0W8;F5GYK2;Q9NRL3-2;M0QXN2;M0R2A7;M0QYS2;M0R0P4 Q9NRL3 STRN4 Striatin-4 1 0 KADVSEQVSNGPVESVTLENS(1)PLVWK 181.9 2.42E-20 257780000 45682 46828 41307 57260 66582 54124 72148 82718 48655 78547 TRUE FALSE FALSE 55843.8033 52304.12725 56588.17823 60387.96881 59952.8623 56957.84895 56732.99041 62431.2808 58419.61221 58966.67845 0.947040002 0.887011591 0.959663656 1.02410328 1.016724426 0.965932802 0.962119487 1.058755257 0.990722451 1 15.84761231 -5.004766454 5.014769628 1.002022075 0.917414577 0.574984374 0.029633127 0.12143955 9.073158839 0.008152294 0.016172158 9.89E-06 5.004766454 -0.084607498 KAEAAAAPTVAPGPAQPGHVS(ph)PTPAT(ph)TSPGEKGEAGTPVAAGTTAAAIPR ddPTM_HeLa_A485_30min_R1 1 KAEAAAAPTVAPGPAQPGHVSPTPATTSPGEKGEAGTPVAAGTTAAAIPR 50 2 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 2 0 KAEAAAAPTVAPGPAQPGHVS(0.929)PT(0.142)PAT(0.331)T(0.308)S(0.286)PGEKGEAGT(0.002)PVAAGTTAAAIPR 100.15 6.95E-06 149780000 25343 15610 13068 29921 28409 27109 41109 38924 19397 45413 TRUE FALSE FALSE 30980.46292 17435.45371 17902.397 31555.50847 25580.50021 28528.38532 32325.72632 29377.82797 23289.79998 34092.37486 0.908721174 0.511417987 0.525114401 0.925588452 0.750329078 0.836796657 0.948180537 0.86171257 0.683138094 1 15.05716148 -5.267058389 24.99770188 0.85059396 0.634717865 0.338729082 0.133480934 494.9651879 2201988.725 0.036772198 0.056297127 5.41E-06 5.267058389 -0.215876095 KAEAAAS(ph)ALADADADLEER ddPTM_HeLa_A485_30min_R1 1 KAEAAASALADADADLEER 19 1 M0R1T5;O43633 M0R1T5 CHMP2A Charged multivesicular body protein 2a 1 0 KAEAAAS(1)ALADADADLEER 57.238 0.015474 24207000 32271 33088 25317 30895 35712 30530 44720 48980 27361 50706 TRUE FALSE FALSE 39449.57262 36957.35377 34682.81183 32582.71562 32156.38789 32128.50359 35165.20667 36967.5782 32852.10173 38065.92737 1.036348654 0.970877536 0.911124836 0.855954862 0.844755142 0.844022616 0.923797451 0.971146134 0.863031693 1 15.21621261 -4.554370082 2.234418247 0.894863163 1.038065557 0.42082544 0.050465196 0.35272846 3.023067273 0.014083812 0.07819207 2.79E-05 4.554370082 0.143202394 KAEAAVVAVAEK(ac)R ddPTM_HeLa_A485_30min_R1 1 KAEAAVVAVAEKR 13 2 A0A087WYP2;Q8IZQ5 A0A087WYP2 C11orf31;SELH Selenoprotein H 0 1 KAEAAVVAVAEK(1)R 116.35 0.0036208 45337000 61776 72185 72970 62360 96598 89535 110330 138850 97498 147810 FALSE TRUE FALSE 75517.85808 80626.40782 99964.63954 65766.5689 86980.36394 94222.91415 86757.09419 104796.8198 117064.9543 110963.6872 0.680563705 0.726601736 0.900877053 0.592685504 0.783863317 0.849132869 0.781851219 0.944424454 1.054984358 1 16.75972811 -7.278597854 1.309495035 1.038543847 0.746773759 0.65744825 0.081049139 0.285939864 0.866108365 0.068439339 0.026001708 5.27E-08 7.278597854 -0.291770088 KAEAAVVAVAEK(ac)R ddPTM_HeLa_A486_30min_R1 2 KAEAAVVAVAEKR 13 2 A0A087WYP2;Q8IZQ5 A0A087WYP2 C11orf31;SELH Selenoprotein H 0 1 ; KAEAAVVAVAEK(1)R;KAEAAVVAVAEK(1)R 124.92 0.0014223 111746000 131048 144975 124475 64428 183660 148775 172913 179541 156797 192718 FALSE TRUE FALSE 121862.2119 133486.653 172675.0536 149991.64 160623.6502 130420.6531 129648.3385 138663.4337 170388.2902 144460.1584 0.843569696 0.924037842 1.195312642 1.038290707 1.111888925 0.902813998 0.897467786 0.959873194 1.179482925 1 17.14031213 -4.532575981 24.99870529 1.029502532 0.863686662 0.290106158 0.098213215 228.1455578 588141.4925 0.026383575 0.069987755 2.93E-05 4.532575981 -0.165815869 KAEAGAGS(ph)ATEFQFR ddPTM_HeLa_A485_30min_R1 4 KAEAGAGSATEFQFR 15 1 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 KAEAGAGS(0.801)AT(0.199)EFQFR;KAEAGAGS(0.985)AT(0.015)EFQFR;KAEAGAGS(0.788)AT(0.212)EFQFR;KAEAGAGS(0.884)AT(0.116)EFQFR ;;; 225.69 5.29E-34 2291470000 804210 1008540 921660 893140 1433160 1136310 1555090 1789510 1081170 1442800 TRUE FALSE FALSE 983103.74 1126479.98 1262620.387 941929.9766 1290469.558 1195805.435 1222832.318 1350629.867 1298150.902 1083136.513 0.907645277 1.040016624 1.165707529 0.86963182 1.191419127 1.10402098 1.128973406 1.24696181 1.198510886 1 20.04678365 -5.793591134 24.99908443 1.154480785 1.011051783 0.35513694 0.097142635 221.9421083 172566.4029 0.029745907 0.0337314 1.61E-06 5.793591134 -0.143429002 KAEAGAGS(ph)ATEFQFR ddPTM_HeLa_A486_30min_R1 4 KAEAGAGSATEFQFR 15 1 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 KAEAGAGS(0.713)AT(0.287)EFQFR;KAEAGAGS(0.961)AT(0.039)EFQFR;KAEAGAGS(0.958)AT(0.042)EFQFR;KAEAGAGS(0.538)AT(0.462)EFQFR ;;; 191.71 1.86E-18 2023540000 620752 698825 543557 279235 849345 699327 886315 919723 547793 820766 TRUE FALSE FALSE 577240.4904 643447.5619 754036.8274 650073.1918 742812.2303 613051.145 664549.6125 710322.1503 595276.1383 615240.8513 0.938234984 1.045846615 1.225596164 1.05661578 1.207351932 0.996440896 1.08014546 1.154543215 0.96754976 1 19.23079177 -7.778081464 24.83760569 0.983774771 1.090877402 0.194559729 0.084752634 414.1036151 618013.2237 0.080000759 0.02089289 1.67E-08 7.778081464 0.107102631 KAEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_A485_30min_R1 8 KAEDSDSEPEPEDNVR 16 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR ;;;;;;; 199.89 1.80E-25 14118760000 8298593 7292020 5505361 13842110 10417430 8433417 14030340 13222340 6996200 18647100 TRUE FALSE FALSE 10144586.38 8144758.307 7542023.131 14598269.42 9380234.091 8874977.674 11032643.24 9979540.383 8400273.167 13998721.14 0.72467951 0.581821598 0.538765152 1.042828789 0.67007793 0.633984889 0.788117938 0.712889433 0.600074327 1 23.7387917 -11.02684758 2.667727865 1.352137152 0.701417777 0.309752111 0.13465144 20121955.06 5820777.424 43422350.41 0.034036917 9.40E-12 11.02684758 -0.650719375 KAEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_A486_30min_R1 7 KAEDSDSEPEPEDNVR 16 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR ;;;;;; 199.94 1.79E-25 21978400000 5638990 5333230 2824390 3729920 5208190 6440350 8565700 7853410 4450260 10067850 TRUE FALSE FALSE 5243725.921 4910605.432 3918069.448 8683442.26 4554930.246 5645805.098 6422471.261 6065359.982 4836012.12 7546794.829 0.694828207 0.650687549 0.519169997 1.150613268 0.603558245 0.748106345 0.851019725 0.80370013 0.640803444 1 22.84743262 -14 0.135961681 1.791777096 0.65491192 0.17583493 0.165664788 261.2496259 2.199692792 57.31052329 1.107579228 1.00E-14 14 -1.136865177 KAEEDAALQAK(ac)K ddPTM_HeLa_A486_30min_R1 1 KAEEDAALQAKK 12 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;A0A2R8Y4M7;H0YA99;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 KAEEDAALQAK(1)K 117.92 0.0052891 19132000 32263 33777 19653 14373 40745 39431 42155 43158 26198 44504 FALSE TRUE FALSE 30001.53031 31100.38751 27263.16793 33461.07037 35634.38217 34566.40413 31607.37313 33331.86553 28468.86373 33359.90873 0.899328909 0.932268363 0.817243481 1.003032432 1.068179846 1.036166028 0.947465816 0.999159374 0.85338554 1 15.02582772 -5.283928137 24.80358178 0.990547431 0.887879057 0.383002062 0.060156087 750.0968726 827304.4306 0.017539876 0.026037256 5.20E-06 5.283928137 -0.102668375 KAEGAATEEEGT(ph)PK ddPTM_HeLa_A485_30min_R1 5 KAEGAATEEEGTPK 14 1 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAAT(0.001)EEEGT(0.999)PK ;;;; 157.14 1.42E-08 4012620000 3873016 2209236 1090173 6948920 2186218 2739912 4831780 3601884 2114088 11638450 TRUE FALSE FALSE 4734555.047 2467586.932 1493473.359 7328521.904 1968550.46 2883369.556 3799430.731 2718516.301 2538366.07 8737198.605 0.541884792 0.282423125 0.170932747 0.838772499 0.225306823 0.33001076 0.434856858 0.311142784 0.290524021 1 23.05873935 -10.49771364 3.230023854 1.014815552 0.378559083 0.509644412 0.182244412 157626347.2 199181399.3 20793904.63 0.043804498 3.18E-11 10.49771364 -0.63625647 KAEGAATEEEGT(ph)PK ddPTM_HeLa_A486_30min_R1 6 KAEGAATEEEGTPK 14 1 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK ;;;;; 160.02 7.50E-12 4089880000 4567270 4086760 1582421 3062120 3329410 6042050 6456260 5433490 3747440 12019570 TRUE FALSE FALSE 4247127.958 3762910.254 2195176.79 7128770.111 2911804.352 5296643.302 4840835.461 4196402.939 4072271.116 9009791.438 0.471390263 0.417646766 0.243643463 0.791224765 0.323182215 0.58787635 0.537286073 0.465760275 0.451982839 1 23.10306228 -14 0.360055017 7.429564914 0.462929197 0.554524864 0.140571095 356.1096995 2.845238686 1774.336185 0.100382395 1.00E-14 14 -6.966635717 KAEGEPQEES(ph)PLK ddPTM_HeLa_A485_30min_R1 11 KAEGEPQEESPLK 13 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK ;;;;;;;;;; 229.39 2.16E-27 56495420000 26036360 14145510 10691530 51140300 21540910 19303630 34446760 23027900 16474440 61176500 TRUE FALSE FALSE 31828058.46 15799704.34 14646771.86 53933965.09 19396221.37 20314338.22 27086928.32 17380271.42 19780709 45926324.42 0.693024292 0.344022835 0.318918878 1.174358405 0.422333414 0.442324494 0.589790902 0.37843811 0.430705249 1 25.45281799 -10.31171328 3.280884462 1.002584117 0.530939316 0.254223208 0.240117664 187440799.8 263282537.4 4745245.128 0.059274285 4.88E-11 10.31171328 -0.4716448 KAEGEPQEES(ph)PLK ddPTM_HeLa_A486_30min_R1 11 KAEGEPQEESPLK 13 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK ;;;;;;;;;; 201.9 1.01E-21 67759260000 39442520 36158420 12286460 23582950 24733390 47753890 60088120 49456220 29260760 73690780 TRUE FALSE FALSE 36677803.03 33293095.11 17044106.35 54902299.42 21631097.6 41862500.58 45053436.83 38196118.33 31797106.24 55238129.04 0.663994304 0.602719456 0.308556909 0.993920329 0.391597217 0.75785515 0.815622064 0.691481029 0.575636916 1 25.71916112 -14 0.153655105 2.262658553 0.543167097 0.251391079 0.18633405 186.8374149 1.683057345 72.13819882 0.858503294 1.00E-14 14 -1.719491457 KAEGEPQEES(ph)PLKSK ddPTM_HeLa_A485_30min_R1 7 KAEGEPQEESPLKSK 15 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(1)PLKSK;KAEGEPQEES(0.855)PLKS(0.145)K;KAEGEPQEES(0.999)PLKS(0.001)K;KAEGEPQEES(1)PLKSK;KAEGEPQEES(0.998)PLKS(0.002)K;KAEGEPQEES(1)PLKSK;KAEGEPQEES(1)PLKSK ;;;;;; 193.54 1.46E-18 15493800000 3046120 1948370 961342 5489550 3496180 3449300 7136080 7026320 2087400 7544290 TRUE FALSE FALSE 3723718.885 2176214.923 1316982.411 5789430.216 3148088.043 3629900.014 5611398.212 5303104.003 2506322.033 5663637.345 0.657478341 0.384243339 0.23253297 1.022210615 0.555842094 0.640913214 0.990776399 0.936342439 0.442528693 1 22.43329746 -5.256960339 24.99989155 0.787071438 0.420700732 0.393301333 0.212307669 403.0562187 2249662.02 0.057991506 0.096238195 5.53E-06 5.256960339 -0.366370706 KAEGEPQEES(ph)PLKSK ddPTM_HeLa_A486_30min_R1 6 KAEGEPQEESPLKSK 15 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(1)PLKSK;KAEGEPQEES(1)PLKSK;KAEGEPQEES(1)PLKSK;KAEGEPQEES(0.999)PLKS(0.001)K;KAEGEPQEES(1)PLKSK;KAEGEPQEES(0.995)PLKS(0.005)K ;;;;; 254.32 1.50E-50 44381000000 6701180 4984590 1626390 5682230 4732230 7741310 12506500 11169360 3754370 14751400 TRUE FALSE FALSE 6231461.887 4589592.935 2256171.764 13228518.6 4138669.587 6786265.88 9377241.42 8626340.553 4079801.814 11057553.42 0.563547979 0.415064052 0.204038966 1.19633323 0.374284385 0.613722188 0.848039441 0.780131031 0.368960624 1 23.39852888 -13.99999999 0.057534736 2.345558942 8.55E-14 0.165859722 0.272950041 800.0274528 3.365956142 157.9618285 28.24618781 1.00E-14 13.99999999 -2.345558942 KAELMGISTDIFPVDNSDTS(ph)SSVDGR ddPTM_HeLa_A485_30min_R1 1 KAELMGISTDIFPVDNSDTSSSVDGR 26 1 A0A0U1RRH6;O94880;B4DG57;O94880-2 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 KAELMGISTDIFPVDNS(0.001)DT(0.077)S(0.307)S(0.307)S(0.307)VDGR 80.593 0.0041585 64573000 50593 57684 55866 57820 72065 73672 79870 95906 58853 83375 TRUE FALSE FALSE 61847.23831 64429.64202 76533.15818 60978.56019 64889.95556 77529.352 62805.12202 72384.90313 70664.25727 62591.1469 0.988114795 1.029373086 1.222747337 0.974236185 1.036727377 1.238663227 1.003418616 1.156471909 1.128981665 1 15.93367099 KAEPEPMREEEK ddPTM_HeLa_A486_30min_R1 1 KAEPEPMREEEK 12 2 M0R3F6;M0R2Z9;Q8IX01-4;Q8IX01-3;Q8IX01 M0R3F6 SUGP2 SURP and G-patch domain-containing protein 2 0 0 55.064 0.03229 211600000 722440 338360 279400 20662 360760 263100 427780 511550 449690 412930 FALSE FALSE TRUE 671800.6867 311547.1213 387591.1626 48102.1802 315510.1168 230641.397 320744.9194 395081.2321 488669.4913 309529.6403 2.170392102 1.006517893 1.252194014 0.155404116 1.019321176 0.745135092 1.036233296 1.276392244 1.578748616 1 18.23971804 -4.259952364 6.16221015 0.988640344 2.200070819 0.491087519 0.354611733 0.114684755 22.56704726 0.091999072 0.578673225 5.50E-05 4.259952364 1.211430475 KAEPSEVDMNS(ph)PK ddPTM_HeLa_A485_30min_R1 2 KAEPSEVDMNSPK 13 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK ; 109.87 0.00019193 2162700000 2935600 1950070 1347870 4953900 3193300 2639900 4797000 4464800 1972890 7716400 TRUE FALSE FALSE 3588614.092 2178113.723 1846503.203 5224519.013 2875363.84 2778121.082 3772081.762 3369800.799 2368830.927 5792843.49 0.619490946 0.376000789 0.318755928 0.901891968 0.496364841 0.479578136 0.651162381 0.581717909 0.408923688 1 22.46584026 -11.15169484 2.366772591 2.055121535 0.538445049 0.435549225 0.15808325 6611512.662 1474874.251 37495020.89 0.03952806 7.05E-12 11.15169484 -1.516676485 KAEPSEVDMNS(ph)PK ddPTM_HeLa_A486_30min_R1 3 KAEPSEVDMNSPK 13 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK ;; 133.93 8.37E-06 1912840000 3711260 3273840 1465760 3131570 2942120 4340600 6001600 5268200 2826340 7651000 TRUE FALSE FALSE 3451119.839 3014408.995 2033341.526 7290453.221 2573091.875 3805100.904 4499936.202 4068745.864 3071329.427 5735139.8 0.601749907 0.525603403 0.354540883 1.27119015 0.448653732 0.663471343 0.784625372 0.709441444 0.535528258 1 22.45139722 -14 0.217931755 2.636297017 0.618259554 0.152775108 0.238850841 304.2110013 3.042877536 219.6442161 0.467132022 1.00E-14 14 -2.018037464 KAEPYETSQGKGT(ph)PR ddPTM_HeLa_A485_30min_R1 2 KAEPYETSQGKGTPR 15 2 Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3;J3KST4 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 KAEPYETSQGKGT(1)PR;KAEPYET(0.004)S(0.025)QGKGT(0.971)PR ; 104.45 0.00032099 798280000 705400 678240 507270 843200 959960 859520 1059150 1177980 620570 1136020 TRUE FALSE FALSE 862313.7964 757554.2681 694930.2823 889261.8809 864383.0118 904523.1381 832853.95 889078.558 745112.7068 852831.1209 1.011119054 0.888281689 0.814850989 1.042717437 1.013545344 1.060612255 0.976575467 1.042502479 0.873693148 1 19.70190056 -5.280468394 24.85430494 1.005090582 0.903103674 0.308333559 0.06614336 837.1925853 1093477.705 0.018462146 0.027436259 5.24E-06 5.280468394 -0.101986908 KAEPYETSQGKGT(ph)PR ddPTM_HeLa_A486_30min_R1 1 KAEPYETSQGKGTPR 15 2 Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3;J3KST4 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 KAEPYETS(0.001)QGKGT(0.999)PR 78.794 0.0051286 482380000 557090 551050 290400 229680 577700 596800 670020 691020 406830 642570 TRUE FALSE FALSE 518040.8678 507382.7911 402850.6572 534706.6474 505239.4792 523172.8838 502373.9093 533689.8309 442094.352 481666.2896 1.075518215 1.053390702 0.836368801 1.110118476 1.048940916 1.086172927 1.042991632 1.108007437 0.917843664 1 18.87767443 -4.532464703 24.99125562 1.024577436 1.069986478 0.047060873 0.081519163 652.2973578 1700584.286 0.020780543 0.055128446 2.93E-05 4.532464703 0.045409042 KAEQGS(ph)EEEGEGEEEEEEGGESK ddPTM_HeLa_A485_30min_R1 8 KAEQGSEEEGEGEEEEEEGGESK 23 1 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK ;;;;;;; 262.7 1.54E-61 14559600000 4144330 2351845 1534255 7225350 3193950 3102020 5470950 4224390 2461276 10472640 TRUE FALSE FALSE 5066221.911 2626872.814 2101839.77 7620052.575 2875949.123 3264436.971 4302036.839 3188351.729 2955231.517 7862003.583 0.644393234 0.334122566 0.267341492 0.969225274 0.365803589 0.415216927 0.547193447 0.405539338 0.375887836 1 22.90646559 -10.23054364 3.772939772 1.000646919 0.478782757 0.395589277 0.192621796 288429651.7 463524250.6 2167182.917 0.048932202 5.88E-11 10.23054364 -0.521864162 KAEQGS(ph)EEEGEGEEEEEEGGESK ddPTM_HeLa_A486_30min_R1 8 KAEQGSEEEGEGEEEEEEGGESK 23 1 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK ;;;;;;; 305.23 5.49E-90 18161450000 5756440 5019160 1636305 3610840 3675832 6581120 8983590 7378900 4093180 10790690 TRUE FALSE FALSE 5352943.282 4621423.482 2269926.118 8406218.002 3214774.875 5769208.326 6735800.763 5698885.55 4447980.138 8088630.988 0.661786066 0.571348043 0.280631682 1.039263383 0.397443632 0.713249045 0.832749173 0.704555018 0.549905187 1 22.94746411 -14 0.140427457 2.208624776 0.515694266 0.22819955 0.201230381 206.7288061 1.77410398 70.24130714 1.200529897 1.00E-14 14 -1.69293051 KAEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_HeLa_A485_30min_R1 2 KAEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 33 2 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK ; 261.64 3.10E-64 2271590000 318033 238118 151460 357594 524395 378747 828980 862600 308595 896570 TRUE FALSE FALSE 388778.3436 265963.8287 207491.3568 377128.4547 472184.3925 398577.6073 651861.6509 651045.9975 370527.1859 673071.5991 0.577618108 0.395149385 0.308275311 0.560309565 0.701536647 0.592177129 0.968487828 0.96727599 0.550501888 1 19.36040046 -6.058490211 1.149361211 0.856453647 0.426221414 0.572282604 0.151134242 0.345927973 0.960018733 0.072106389 0.078647817 8.74E-07 6.058490211 -0.430232234 KAEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_HeLa_A486_30min_R1 4 KAEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 33 2 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK;KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK ;;; 334.53 3.09E-128 2111480000 831821 590108 272303 281979.9 686469 819272 1423706 1273205 501015 1146401 TRUE FALSE FALSE 773514.6434 543345.6929 377746.0141 656463.4577 600365.657 718198.5504 1067479.7 983324.0154 544443.3836 859334.7278 0.900131949 0.632286437 0.439579598 0.76392055 0.69864005 0.835761115 1.24221641 1.144285205 0.633563809 1 19.71286067 -6.501868871 4.507235393 1.021093564 0.679315116 0.400017571 0.1823598 0.200438423 10.08027665 0.070333345 0.058068937 3.15E-07 6.501868871 -0.341778448 KAGAVTS(ph)TPNR ddPTM_HeLa_A486_30min_R1 1 KAGAVTSTPNR 11 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 KAGAVT(0.098)S(0.529)T(0.373)PNR 54.524 0.023964 95836000 89129 100930 78147 48058 123140 103300 120270 119060 93763 115620 TRUE FALSE FALSE 82881.51736 92931.93922 108407.6112 111881.4527 107694.633 90555.89628 90177.17391 91952.63706 101890.4523 86667.99944 0.956310494 1.072275117 1.250837817 1.290919987 1.242611271 1.044859658 1.040489852 1.06097565 1.175640986 1 16.40321178 -6.28081314 24.45636262 1.066710239 1.169605393 0.193833436 0.099562897 1158.283243 1462147.084 0.038637285 0.034123292 5.24E-07 6.28081314 0.102895154 KAGLAS(ph)PEEEDAVGKEPLK ddPTM_HeLa_A485_30min_R1 1 KAGLASPEEEDAVGKEPLK 19 2 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 KAGLAS(1)PEEEDAVGKEPLK 180.37 2.23E-18 322180000 382580 193850 108750 610530 303270 301580 626800 435610 229300 855230 TRUE FALSE FALSE 467683.6011 216519.0712 148981.1505 643881.708 273075.374 317370.2625 492879.0595 328775.9645 275318.4067 642036.9003 0.728437261 0.337237737 0.23204453 1.002873367 0.425326603 0.494317791 0.767680268 0.512082661 0.428820223 1 19.29229669 -11.19319632 2.275843543 2.250070983 0.54582424 0.283470775 0.215737944 14871849.3 3056032.447 95730757.74 0.053297995 6.41E-12 11.19319632 -1.704246743 KAGLAS(ph)PEEEDAVGKEPLK ddPTM_HeLa_A486_30min_R1 2 KAGLASPEEEDAVGKEPLK 19 2 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 KAGLAS(1)PEEEDAVGKEPLK;KAGLAS(1)PEEEDAVGKEPLK ; 153.94 4.12E-09 500030000 982660 867140 260680 613370 702430 1268440 1628970 1488990 638580 1728370 TRUE FALSE FALSE 913780.6085 798424.6683 361622.2773 1427956.358 614324.6795 1111952.769 1221384.477 1149979.481 693932.6286 1295574.902 0.705308977 0.616270558 0.279121089 1.102179701 0.474171488 0.858269767 0.942735518 0.887620993 0.53561753 1 20.305161 -5.258345245 24.99240031 0.815190944 0.541837265 0.29397859 0.208716364 368.8622762 2979415.219 0.055964899 0.091903095 5.52E-06 5.258345245 -0.273353679 KAGSALPGFANS(ph)PAGSTSVVLVPPAHGTLVPDGNK ddPTM_HeLa_A486_30min_R1 1 KAGSALPGFANSPAGSTSVVLVPPAHGTLVPDGNK 35 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 KAGS(0.008)ALPGFANS(0.983)PAGS(0.003)T(0.003)S(0.003)VVLVPPAHGTLVPDGNK 77.126 0.00041253 315780000 123710 111670 61221 12895 104210 107200 125450 120030 97395 90472 TRUE FALSE FALSE 115038.5678 102820.8625 84927.41076 30020.21168 91139.01008 93974.75393 94061.08313 92701.78924 105837.277 67817.22233 1.69630315 1.516146769 1.252298573 0.44266354 1.343891816 1.385706325 1.386979294 1.366935803 1.56062536 1 16.04936407 -5.967907163 24.99997756 1.365793383 1.204827741 0.023086824 0.330790921 742.5172971 578409.9539 0.10992235 0.124639459 1.08E-06 5.967907163 -0.160965642 KAHNS(ph)GEDSDLKQR ddPTM_HeLa_A486_30min_R1 1 KAHNSGEDSDLKQR 14 2 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 KAHNS(0.999)GEDS(0.001)DLKQR 102.58 0.00023044 79644000 45650 28020 26573 16207 54054 47851 62207 58500 36059 80848 TRUE FALSE FALSE 42450.17074 25799.59315 36862.77725 37730.71506 47274.04329 41947.63013 46642.15064 45180.82705 39184.62315 60603.13457 0.700461635 0.42571384 0.608265191 0.622586857 0.780059375 0.692169315 0.769632643 0.74551964 0.646577499 1 15.8871048 -14 0.069608691 2.144954035 0.251422149 0.597366425 0.08880726 211.4465141 1.058152747 39.02513901 4.907387248 1.00E-14 14 -1.893531887 KAHS(ph)NMLTVK ddPTM_HeLa_A485_30min_R1 1 KAHSNMLTVK 10 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 KAHS(1)NMLTVK 73.887 0.0051255 712300000 846820 1019900 952240 700740 1370300 975640 1283900 1319700 1029200 1162200 TRUE FALSE FALSE 1035192.188 1139168.433 1304513.202 739019.6518 1233868.121 1026723.002 1009584.277 996041.5058 1235751 872484.9287 1.186487186 1.305659726 1.495169898 0.847028559 1.414199925 1.176780215 1.157136637 1.141614569 1.41635799 1 19.73477068 -10.74325995 2.698506314 0.952564569 1.234085107 0.14122341 0.175723363 33179174.96 25089180.18 10489402.78 0.042646467 1.81E-11 10.74325995 0.281520538 KAHS(ph)NMLTVK ddPTM_HeLa_A486_30min_R1 2 KAHSNMLTVK 10 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 KAHS(1)NMLTVK;KAHS(1)NMLTVK ; 79.974 0.0034053 1018160000 1198440 1268910 877730 72782 1373810 1077150 1225020 1192480 1052190 757160 TRUE FALSE FALSE 1114435.545 1168356.95 1217610.562 169440.1742 1201493.94 944262.1847 918507.0391 920978.3357 1143394.676 567562.2077 1.963547836 2.058553114 2.145334108 0.298540269 2.116937885 1.663715751 1.618337209 1.622691439 2.01457155 1 19.114419 -11.06538313 2.304395893 0.000108686 1.706787938 0.150222371 0.514281383 8336846.358 3079400.667 43773647.76 0.127397511 8.60E-12 11.06538313 1.706679251 KAIIIFVPVPQLK ddPTM_HeLa_A485_30min_R1 2 KAIIIFVPVPQLK 13 1 P62081;B5MCP9 P62081 RPS7 40S ribosomal protein S7 0 0 ; ; 162.6 1.16E-06 132343000 592330 615730 428730 619390 722880 612300 858920 920240 329530 850740 FALSE FALSE TRUE 724091.765 687734.2674 587335.0679 653225.7073 650907.529 644359.0812 675404.7253 694549.6971 395663.6484 638666.1747 1.133756246 1.076829014 0.919627641 1.022796781 1.019167062 1.008913744 1.057523871 1.087500363 0.619515584 1 19.28470252 -7.736619372 24.99999816 0.809757429 1.036106777 0.45649732 0.100721892 164.3712979 165564.1304 0.063843873 0.024108382 1.83E-08 7.736619372 0.226349348 KAIIIFVPVPQLK ddPTM_HeLa_A486_30min_R1 2 KAIIIFVPVPQLK 13 1 P62081;B5MCP9 P62081 RPS7 40S ribosomal protein S7 0 0 ; ; 156.14 2.29E-06 127911000 609860 487700 309380 266430 469780 502670 688360 571590 379730 745020 FALSE FALSE TRUE 567111.9633 449052.8758 429180.2215 620262.5046 410855.8119 440655.6862 516125.0473 441451.4347 412645.3021 558462.1427 1.015488643 0.804088302 0.768503697 1.110661685 0.735691429 0.789052028 0.924189856 0.79047692 0.738895747 1 19.09109996 KAILCLLLGGVER ddPTM_HeLa_A485_30min_R1 1 KAILCLLLGGVER 13 1 J3KQ69;A0A499FHX9;P25205;P25205-2 J3KQ69 MCM3 DNA replication licensing factor MCM3 0 0 145.71 1.15E-05 0 7395 11685 8211.9 6649 12247 8853.5 12297 14232 6581.3 10788 FALSE FALSE TRUE 9039.992238 13051.4591 11249.82354 7012.218034 11027.64568 9317.05557 9669.645493 10741.57969 7902.106543 8098.750138 1.116220662 1.611539914 1.389081444 0.865839533 1.361647846 1.15043129 1.193967628 1.326325606 0.975719266 1 12.98348356 -1.000015849 0.069281447 0.73524958 2.326647123 0.175563457 0.194460189 447.3035549 2.295558607 9.310921833 69.57722931 0.099996351 1.000015849 1.591397544 KAINK(ac)AQK ddPTM_HeLa_A486_30min_R1 1 KAINKAQK 8 2 Q99879 Q99879 HIST1H2BM Histone H2B type 1-M 0 1 KAINK(1)AQK 97.635 0.012147 0 39273 59351 117220 11171 102090 51799 39884 49083 79275 44641 FALSE TRUE FALSE 36520.16551 54647.81061 162610.7233 26006.65255 89284.92025 45408.56603 29904.60135 37907.87237 86146.62083 33462.60304 1.091372523 1.633101004 4.859476207 0.77718558 2.668200085 1.356994433 0.893672298 1.132842903 2.57441481 1 15.03026206 -6.281299429 22.55248368 1.368767658 2.24209821 0.114534405 1.128908161 525.2992764 596510.1729 0.39792869 0.351650218 5.23E-07 6.281299429 0.873330552 KAIS(ph)S(ph)VK ddPTM_HeLa_A485_30min_R1 2 KAISSVK 7 1 Q8NGP0 Q8NGP0 OR4C13 Olfactory receptor 4C13 2 0 KAIS(1)S(1)VK;KAIS(1)S(1)VK ; 60.398 0.01618 673040000 1402800 1943490 1714580 859880 2241340 1962000 1678230 2157180 1646580 1162140 TRUE FALSE FALSE 1714848.02 2170764.249 2348874.492 906853.0671 2018184.32 2064727.286 1319662.451 1628128.223 1977033.503 872439.8856 1.965577284 2.488153379 2.692305258 1.03944476 2.313264619 2.366612669 1.512611324 1.866178117 2.266097109 1 19.7346962 -10.85218603 0.242782437 2.07E-15 2.215910665 0.312774265 0.467204443 36.79573855 1.422621722 23.13931288 0.814746356 1.41E-11 10.85218603 2.215910665 KAIS(ph)S(ph)VK ddPTM_HeLa_A486_30min_R1 2 KAISSVK 7 1 Q8NGP0 Q8NGP0 OR4C13 Olfactory receptor 4C13 2 0 KAIS(1)S(1)VK;KAIS(1)S(1)VK ; 49.06 0.025609 542610000 1619090 1855910 1675780 314187 2203830 1561720 1437180 1673670 1493360 1105490 TRUE FALSE FALSE 1505600.152 1708840.932 2324686.895 731443.2141 1927405.092 1369050.865 1077582.363 1292611.877 1622805.647 828668.1085 1.816891632 2.062153611 2.805329264 0.8826733 2.325907166 1.652109995 1.300378707 1.559866808 1.958330037 1 19.66043488 -8.129109516 0.088630918 4.01E-10 2.992536885 0.237524087 0.490197688 30.56899406 1.650467032 30.06802687 22.84703499 7.43E-09 8.129109516 2.992536885 KAIS(ph)SANLLVR ddPTM_HeLa_A485_30min_R1 2 KAISSANLLVR 11 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 KAIS(0.789)S(0.211)ANLLVR;KAIS(0.792)S(0.208)ANLLVR ; 145.49 2.48E-06 1810700000 984140 1094930 871730 796740 1155510 1080320 1417860 1750400 683840 836710 TRUE FALSE FALSE 1203058.548 1222972.539 1194219.203 840263.8887 1040463.367 1136883.885 1114922.628 1321111.655 821080.4154 628133.5955 1.915290881 1.946994314 1.901218485 1.337715248 1.656436425 1.809939626 1.77497691 2.103233556 1.307174813 1 19.26071191 -7.963216961 5.679594357 1.001509839 1.79034592 0.658622454 0.19373888 0.097642519 7.834718544 0.199059023 0.05173421 1.09E-08 7.963216961 0.788836082 KAIS(ph)SANLLVR ddPTM_HeLa_A486_30min_R1 3 KAISSANLLVR 11 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 KAIS(0.665)S(0.335)ANLLVR;KAIS(0.948)S(0.052)ANLLVR;KAIS(0.5)S(0.5)ANLLVR ;; 154.72 2.26E-07 2917570000 1107960 884060 600350 392504 948030 814290 1027090 1062760 644520 936290 TRUE FALSE FALSE 1030297.726 814003.8659 832821.5979 913769.1481 829119.2374 713831.1789 770101.2185 820792.7479 700387.5125 701836.8898 1.468001669 1.159819151 1.186631267 1.301967966 1.181356024 1.017089853 1.097265233 1.169492171 0.99793488 1 19.42077625 -1 0.231214997 1.01267537 3.084768977 0.644640309 0.082699268 35.60130732 0.466977934 0.123855386 27.97624378 0.1 1 2.072093607 KAKDKDVES(ph)K ddPTM_HeLa_A486_30min_R1 1 KAKDKDVESK 10 3 F8VW41;Q86VP3-4;Q86VP3;Q86VP3-3;Q86VP3-2 F8VW41 PACS2 Phosphofurin acidic cluster sorting protein 2 1 0 KAKDKDVES(1)K 46.426 0.010855 0 45798 46846 35645 12367 45194 44948 56438 48954 47650 49352 TRUE FALSE FALSE 42587.7967 43133.75235 49447.69861 28791.00099 39525.3471 39402.77276 42316.61546 37808.24286 51780.34037 36993.93797 1.151210145 1.165968121 1.33664328 0.778262671 1.068427674 1.065114311 1.143879721 1.022011847 1.399697983 1 15.17500126 KAKPAMPQDSVPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KAKPAMPQDSVPSPR 15 2 P53396 P53396 ACLY ATP-citrate synthase 1 0 KAKPAMPQDSVPS(1)PR 180.05 4.58E-18 442900000 603840 502210 305010 193530 558500 470700 555840 578180 368220 625050 TRUE FALSE FALSE 561513.9342 462413.0506 423118.0405 450547.6205 488447.7222 412629.8197 416762.9529 446541.0356 400137.6061 468533.4116 1.198450143 0.986937194 0.903069087 0.961612575 1.042503502 0.880683873 0.8895053 0.953061243 0.854021498 1 18.83779241 -4.279929889 3.026345676 0.935107116 1.235187718 0.676105811 0.054375835 0.204102938 2.854379885 0.014063311 0.14430255 5.25E-05 4.279929889 0.300080602 KAKS(ph)PAPGLASGDRPPSVSSVHSEGDCNR ddPTM_HeLa_A485_30min_R1 2 KAKSPAPGLASGDRPPSVSSVHSEGDCNR 29 3 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 KAKS(1)PAPGLASGDRPPSVSSVHSEGDCNR;KAKS(1)PAPGLASGDRPPSVSSVHSEGDCNR ; 160.11 7.09E-14 1472630000 625780 895840 741430 461017 1428360 950070 1528140 1865110 995610 1090300 TRUE FALSE FALSE 764982.6021 1000600.695 1015715.81 486201.1914 1286147.463 999814.1961 1201640.405 1407688.848 1195419.795 818508.2755 0.934605825 1.222468636 1.240935298 0.594008889 1.571331044 1.221507743 1.468085835 1.719822377 1.460485899 1 19.64263748 -5.794997288 24.99999693 1.436655821 1.031389074 0.387804375 0.248580721 193.7741075 144356.9836 0.076198359 0.086405674 1.60E-06 5.794997288 -0.405266747 KALEIS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KALEISPR 8 1 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 KALEIS(1)PR 67.456 0.011014 0 135190 171900 141290 135810 204320 172920 205170 236070 167120 217350 TRUE FALSE FALSE 165262.5491 192002.2097 193559.0506 143228.9564 183977.1834 181973.8238 161333.7534 178173.4624 200659.4511 163168.645 1.01283276 1.176710205 1.186251504 0.877797057 1.1275278 1.115249954 0.988754631 1.09195895 1.229767221 1 17.31600433 -9.914832244 14.01803812 1.000000019 1.087788245 0.067414119 0.099816437 0 0 0.095922445 0.02326461 1.22E-10 9.914832244 0.087788226 KALPASET(ph)PK ddPTM_HeLa_A485_30min_R1 2 KALPASETPK 10 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 KALPAS(0.036)ET(0.964)PK;KALPAS(0.008)ET(0.992)PK ; 112.02 0.000564 1436730000 2318200 1844020 1170080 3466000 2679200 2291200 3425500 3191000 1660550 4756500 TRUE FALSE FALSE 2833875.592 2059662.098 1602941.283 3655338.804 2412449.441 2411163.689 2693613.941 2408402.247 1993807.154 3570792.087 0.793626603 0.576808184 0.448903561 1.0236773 0.675606247 0.675246172 0.75434634 0.674472831 0.558365512 1 21.7678127 -11.18803609 2.425434763 1.893629143 0.687418205 0.291047569 0.146650422 17907039.06 3286595.688 88142698.68 0.038708154 6.49E-12 11.18803609 -1.206210938 KALPASET(ph)PK ddPTM_HeLa_A486_30min_R1 3 KALPASETPK 10 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 KALPAS(0.203)ET(0.797)PK;KALPAS(0.015)ET(0.985)PK;KALPAS(0.01)ET(0.99)PK ;; 91.207 0.0026526 2067930000 3295160 2769740 1459520 2388740 2699170 3359570 4618900 4140470 2079680 5958200 TRUE FALSE FALSE 3064186.3 2550255.715 2024685.231 5561107.44 2360614.93 2945100.411 3463202.366 3197775.367 2259948.337 4466227.939 0.686079247 0.571008858 0.453332266 1.245146355 0.528547795 0.659415608 0.775419977 0.715990185 0.506008284 1 22.09062545 -10.82018358 2.847233682 1.096089843 0.68740314 0.168545419 0.211400722 291665401 196556824.3 191662907.3 0.053540971 1.51E-11 10.82018358 -0.408686703 KALVVPEPEPDSDS(ph)NQER ddPTM_HeLa_A485_30min_R1 6 KALVVPEPEPDSDSNQER 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 KALVVPEPEPDS(0.035)DS(0.965)NQER;KALVVPEPEPDS(0.022)DS(0.978)NQER;KALVVPEPEPDS(0.014)DS(0.986)NQER;KALVVPEPEPDS(0.016)DS(0.984)NQER;KALVVPEPEPDS(0.013)DS(0.987)NQER;KALVVPEPEPDS(0.127)DS(0.873)NQER ;;;;; 178.35 1.52E-14 8162710000 2440570 3534120 3280120 2601930 4266670 3661280 4448540 5576120 3512790 3449540 TRUE FALSE FALSE 2983466.377 3947404.591 4493572.885 2744066.847 3841865.354 3852978.959 3498073.088 4208567.827 4217774.732 2589633.162 1.152080696 1.524310334 1.735215995 1.059635352 1.483555822 1.487847397 1.350798692 1.625159844 1.628715138 1 21.30431631 -4.25225938 23.73820086 1.450872775 1.152080374 0.116209381 0.227387588 1236.052244 3196118.208 0.054275924 0.626830836 5.59E-05 4.25225938 -0.298792402 KALVVPEPEPDSDS(ph)NQER ddPTM_HeLa_A486_30min_R1 8 KALVVPEPEPDSDSNQER 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 KALVVPEPEPDS(0.072)DS(0.928)NQER;KALVVPEPEPDS(0.164)DS(0.836)NQER;KALVVPEPEPDS(0.023)DS(0.977)NQER;KALVVPEPEPDS(0.248)DS(0.752)NQER;KALVVPEPEPDS(0.005)DS(0.995)NQER;KALVVPEPEPDS(0.049)DS(0.951)NQER;KALVVPEPEPDS(0.005)DS(0.995)NQER;KALVVPEPEPDS(0.092)DS(0.908)NQER ;;;;;;; 186.92 3.74E-18 12284140000 4902060 5345540 4611040 1971780 6831910 5089220 6156080 6721050 4598160 6042770 TRUE FALSE FALSE 4558450.908 4921939.942 6396558.176 4590403.488 5974988.143 4461363.78 4615763.672 5190813.634 4996732.211 4529621.06 1.006364737 1.086611855 1.412161876 1.013418877 1.319092274 0.984930907 1.01901762 1.145970836 1.103123671 1 22.11095893 -6.292207362 24.98477278 1.05775736 1.168063495 0.175758628 0.126122817 1343.890621 1091285.649 0.044104834 0.038900651 5.10E-07 6.292207362 0.110306136 KANLLDSMFGS(ph)PGGLR ddPTM_HeLa_A485_30min_R1 2 KANLLDSMFGSPGGLR 16 1 Q9HBE1-4;Q9HBE1-2;Q9HBE1-3;Q9HBE1 Q9HBE1-4 PATZ1 "POZ-, AT hook-, and zinc finger-containing protein 1" 1 0 KANLLDSMFGS(1)PGGLR;KANLLDSMFGS(1)PGGLR ; 152.81 2.21E-08 152116000 195584 266640 221351 177590 351670 296260 326380 416070 241460 258879 TRUE FALSE FALSE 239090.986 297821.2285 303237.9461 187291.292 316656.5 311771.7155 256646.2467 314028.1801 289918.8072 194345.2296 1.230238512 1.532433953 1.560305579 0.963704087 1.629350515 1.604215941 1.3205688 1.615826541 1.491772182 1 17.56826217 -10.35975534 5.641195075 0.999891623 1.443283934 0.299490214 0.201178508 0.000270561 3.07E-05 0.192194831 0.046602793 4.37E-11 10.35975534 0.443392311 KANLLDSMFGS(ph)PGGLR ddPTM_HeLa_A486_30min_R1 2 KANLLDSMFGSPGGLR 16 1 Q9HBE1-4;Q9HBE1-2;Q9HBE1-3;Q9HBE1 Q9HBE1-4 PATZ1 "POZ-, AT hook-, and zinc finger-containing protein 1" 1 0 KANLLDSMFGS(1)PGGLR;KANLLDSMFGS(1)PGGLR ; 166.27 3.22E-12 180794000 408900 387950 335990 175691 500600 359160 445550 472950 311250 458150 TRUE FALSE FALSE 380238.2216 357207.4291 466094.3261 409017.5269 437810.0801 314850.4909 334068.6775 365269.6094 338229.4006 343426.2579 1.1071903 1.040128473 1.357188961 1.190990839 1.274829952 0.916792131 0.972752286 1.063604197 0.984867618 1 18.38964082 -6.262559465 24.9999501 0.990650322 1.194405215 0.584873924 0.086950913 80.42019143 1794935.157 0.031345511 0.029244627 5.46E-07 6.262559465 0.203754893 KANLQIDQINTDLNLER ddPTM_HeLa_A486_30min_R1 1 KANLQIDQINTDLNLER 17 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 135.09 1.76E-06 14544000 12752 14798 13079 6247.5 20613 15050 21287 20236 11712 17002 FALSE FALSE TRUE 11858.15065 13625.35259 18143.53907 14544.49573 18027.52533 13193.28402 15960.76745 15628.70455 12727.20559 12744.58854 0.930445939 1.069108865 1.4236269 1.141229133 1.41452392 1.035206745 1.252356434 1.226301226 0.998636053 1 13.63759718 -7.767196635 24.89375983 0.999317862 1.193814987 0.202888259 0.147934467 220.3493505 952716.2205 0.128979932 0.036930048 1.71E-08 7.767196635 0.194497125 KANLQQAIVT(ph)PLKPVDNTYYK ddPTM_HeLa_A485_30min_R1 2 KANLQQAIVTPLKPVDNTYYK 21 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KANLQQAIVT(1)PLKPVDNTYYK;KANLQQAIVT(1)PLKPVDNTYYK ; 171.52 7.75E-14 692120000 489150 392860 242009 550030 600240 560500 698930 735250 402500 771480 TRUE FALSE FALSE 597959.73 438801.5596 331538.1999 580076.7462 540477.998 589846.9133 549597.8958 554928.7847 483278.0581 579164.234 1.032452791 0.757646163 0.572442462 1.001575567 0.933203341 1.018444991 0.948949993 0.958154444 0.83444044 1 19.14361299 -5.33425968 24.99992734 0.955960923 0.784515444 0.314586624 0.114207545 164.5966627 56506.89377 0.032412196 0.048075062 4.63E-06 5.33425968 -0.171445479 KANLQQAIVT(ph)PLKPVDNTYYK ddPTM_HeLa_A486_30min_R1 1 KANLQQAIVTPLKPVDNTYYK 21 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KANLQQAIVT(1)PLKPVDNTYYK 180.42 4.41E-19 471690000 899110 718330 296390 349960 672180 786940 992780 883330 537910 1035400 TRUE FALSE FALSE 836087.032 661406.9147 411160.1456 814724.566 587868.9166 689855.3438 744375.9434 682215.042 584536.4719 776129.1007 1.077252523 0.852186723 0.529757414 1.049728151 0.757437024 0.888840971 0.959087789 0.878996859 0.753143351 1 19.56593712 -6.480976795 24.92708614 0.892900795 0.843851788 0.016856248 0.154476425 2563.512125 1525011.337 0.054502964 0.048063222 3.30E-07 6.480976795 -0.049049007 KANNS(ph)QEPS(ph)PQLASSVASTR ddPTM_HeLa_A485_30min_R1 1 KANNSQEPSPQLASSVASTR 20 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 2 0 KANNS(1)QEPS(0.997)PQLAS(0.002)S(0.002)VASTR 61.109 0.0076816 365780000 158460 157410 119190 169630 197620 162420 235090 259630 124520 219400 TRUE FALSE FALSE 193708.8803 175817.7302 163283.3409 178896.4574 177944.2589 170924.0601 184861.101 195955.3354 149510.0218 164707.6178 1.176077239 1.067453543 0.991352696 1.086145619 1.080364475 1.037742288 1.122359145 1.189716287 0.907729854 1 17.32954776 -7.776771494 24.99856221 0.953864889 1.087968398 0.464173299 0.059912199 256.9782781 418983.2167 0.058058988 0.015216323 1.67E-08 7.776771494 0.134103509 KANNSQEPS(ph)PQLASSVASTR ddPTM_HeLa_A485_30min_R1 4 KANNSQEPSPQLASSVASTR 20 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 KANNSQEPS(1)PQLASSVASTR;KANNSQEPS(1)PQLASSVASTR;KANNSQEPS(1)PQLASSVASTR;KANNSQEPS(1)PQLASSVASTR ;;; 182.66 3.57E-19 2641940000 1065810 1148190 964050 975820 1528820 1302690 1575420 1809020 1067090 1456020 TRUE FALSE FALSE 1302895.757 1282460.833 1320692.212 1029126.576 1376605.313 1370896.834 1238818.647 1365355.009 1281245.175 1093061.01 1.19196984 1.173274704 1.208251141 0.941508814 1.259403913 1.254181442 1.133348126 1.249111437 1.172162545 1 20.0599425 -9.761474422 4.364703296 0.999999475 1.175550454 0.266790633 0.087485751 20677191.14 43972370.78 229.4103871 0.021930806 1.73E-10 9.761474422 0.175550979 KANNSQEPS(ph)PQLASSVASTR ddPTM_HeLa_A486_30min_R1 4 KANNSQEPSPQLASSVASTR 20 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 KANNS(0.002)QEPS(0.998)PQLASSVASTR;KANNS(0.004)QEPS(0.995)PQLASSVASTR;KANNSQEPS(1)PQLASSVASTR;KANNSQEPS(1)PQLASSVASTR ;;; 182.4 3.64E-19 2256130000 1626758 1617388 1101135 620437 1886665 1585353 1903090 1959920 1186588 1747565 TRUE FALSE FALSE 1512730.665 1489220.284 1527523.961 1444408.691 1650021.883 1389768.266 1426916.753 1513689.001 1289442.403 1309963.349 1.154788541 1.136841184 1.16608145 1.102632903 1.25959393 1.060921488 1.089279905 1.155520116 0.984334717 1 20.32109502 -7.629693018 0.850275384 0.990356477 1.152452451 0.489752484 0.055833795 0.491142297 0.725711954 0.051043605 0.019689561 2.35E-08 7.629693018 0.162095974 KAPAGPSLEETSVSS(ph)PK ddPTM_HeLa_A485_30min_R1 3 KAPAGPSLEETSVSSPK 17 1 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 KAPAGPSLEETSVS(0.007)S(0.993)PK;KAPAGPSLEETSVS(0.04)S(0.96)PK;KAPAGPSLEETSVS(0.038)S(0.962)PK ;; 170.91 2.14E-12 1972960000 2206340 1698840 1140320 4229000 2309740 2066370 3157000 2737800 1692480 5620300 TRUE FALSE FALSE 2697132.721 1897504.56 1562171.821 4460019.562 2079774.176 2174561.938 2482481.16 2066350.257 2032145.212 4219262.644 0.639242671 0.44972421 0.370247589 1.057061373 0.49292361 0.515389091 0.588368483 0.489742031 0.481635154 1 22.00855947 -11.07343823 2.88379456 1.708081216 0.565189971 0.347652098 0.178793107 261775846.9 255699766 1200265127 0.04599089 8.44E-12 11.07343823 -1.142891245 KAPAGPSLEETSVSS(ph)PK ddPTM_HeLa_A486_30min_R1 3 KAPAGPSLEETSVSSPK 17 1 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 KAPAGPSLEETS(0.002)VS(0.01)S(0.988)PK;KAPAGPSLEETSVS(0.084)S(0.916)PK;KAPAGPSLEETSVS(0.031)S(0.969)PK ;; 207.07 1.63E-25 2588420000 2924430 2598390 1183240 1903500 2219380 3368850 4232700 3739110 2011170 5845100 TRUE FALSE FALSE 2719442.559 2392484.113 1641422.216 4431444.198 1941004.666 2953235.539 3173633.691 2887796.277 2185499.835 4381448.915 0.620671977 0.546048615 0.374630002 1.011410673 0.443005203 0.674031718 0.724334291 0.659096188 0.498807558 1 22.06297661 -11.12659727 2.454928564 1.776918791 0.620254865 0.320188028 0.167404064 25268611.9 7066597.54 109377574.8 0.042728662 7.47E-12 11.12659727 -1.156663926 KAPAGQEEPGT(ph)PPS(ph)SPLSAEQLDR ddPTM_HeLa_A485_30min_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 KAPAGQEEPGT(1)PPS(0.749)S(0.25)PLSAEQLDR 153.39 1.18E-09 1580700000 808880 949760 875410 891340 1203700 1078000 1383400 1556500 911550 1315500 TRUE FALSE FALSE 988812.5654 1060826.17 1199260.588 940031.6472 1083855.402 1134442.413 1087825.289 1174765.935 1094489.724 987570.06 1.001258144 1.07417814 1.214354947 0.95186325 1.097497226 1.148720946 1.10151708 1.189551994 1.108265396 1 19.91352357 -5.99529269 24.99594993 1.121191871 1.066428574 0.071924672 0.077451458 326.0288199 1731199.04 0.023654466 0.026734049 1.01E-06 5.99529269 -0.054763297 KAPAGQEEPGT(ph)PPS(ph)SPLSAEQLDR ddPTM_HeLa_A486_30min_R1 5 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 KAPAGQEEPGT(0.997)PPS(0.693)S(0.31)PLSAEQLDR;KAPAGQEEPGT(1)PPS(0.657)S(0.34)PLS(0.003)AEQLDR;KAPAGQEEPGT(1)PPS(0.667)S(0.333)PLSAEQLDR;KAPAGQEEPGT(1)PPS(0.529)S(0.467)PLS(0.005)AEQLDR;KAPAGQEEPGT(0.958)PPS(0.53)S(0.483)PLS(0.03)AEQLDR ;;;; 115.27 0.00012885 3738130000 2494258 2571199 1726663 932255 2704370 2471104 2953933 2903280 2059577 2951000 TRUE FALSE FALSE 2319423.395 2367447.827 2395273.155 2170336.754 2365162.697 2166244.313 2214827.72 2242266.522 2238102.793 2212050.392 1.048540034 1.070250405 1.08282938 0.981142546 1.069217368 0.979292479 1.001255544 1.013659784 1.01177749 1 21.07695282 -5.253324987 24.92191935 1.009685867 1.067510988 0.547035151 0.024636534 447.6634196 1374916.572 0.006531684 0.011039455 5.58E-06 5.253324987 0.057825122 KAPAGQEEPGT(ph)PPSS(ph)PLSAEQLDR ddPTM_HeLa_A485_30min_R1 3 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 KAPAGQEEPGT(0.999)PPS(0.036)S(0.965)PLSAEQLDR;KAPAGQEEPGT(1)PPS(0.011)S(0.989)PLSAEQLDR;KAPAGQEEPGT(1)PPS(0.152)S(0.845)PLS(0.004)AEQLDR ;; 179.17 1.87E-20 3381920000 2143870 2489000 2077410 2366870 2994950 2619510 3488120 3572940 2196160 3164420 TRUE FALSE FALSE 2620766.485 2780066.899 2845930.407 2496166.115 2696762.262 2756663.493 2742854.667 2696670.863 2636909.168 2375588.331 1.103207341 1.170264588 1.197989723 1.05075702 1.135197638 1.160412963 1.15460016 1.135159164 1.110002576 1 21.17985342 -8.259969696 2.051107152 1.000052538 1.139899186 0.546390889 0.037767761 0.855894101 5.462294298 0.036951159 0.010214811 5.50E-09 8.259969696 0.139846648 KAPAGQEEPGT(ph)PPSS(ph)PLSAEQLDR ddPTM_HeLa_A486_30min_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 KAPAGQEEPGT(1)PPS(0.251)S(0.749)PLSAEQLDR 145.29 2.63E-09 1435600000 1045100 1096800 743400 440080 1128100 1028000 1119000 1157000 866650 1220200 TRUE FALSE FALSE 971843.8869 1009885.574 1031264.389 1024528.48 986603.1789 901175.8119 839014.3644 893576.3571 941771.9198 914653.9778 1.062526278 1.10411762 1.127491285 1.120126852 1.078662754 0.985264191 0.917302482 0.976955634 1.029648307 1 19.80286654 -6.212916778 3.572516841 0.975264437 1.104503007 0.782567242 0.030902625 0.110431322 2.903081933 0.011441394 0.011076428 6.12E-07 6.212916778 0.12923857 KAPAGQEEPGT(ph)PPSSPLSAEQLDR ddPTM_HeLa_A485_30min_R1 3 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGT(0.957)PPS(0.04)S(0.003)PLSAEQLDR;KAPAGQEEPGT(0.996)PPS(0.004)SPLSAEQLDR;KAPAGQEEPGT(0.999)PPS(0.001)SPLSAEQLDR ;; 127.23 4.34E-06 6337920000 990050 1157380 1020130 1120770 1387790 1300090 1541790 1768680 1029830 1400830 TRUE FALSE FALSE 1210283.207 1292725.523 1397518.538 1181994.827 1249616.755 1368160.702 1212373.971 1334908.457 1236507.435 1051628.861 1.15086534 1.229260218 1.328908505 1.123965755 1.188267839 1.300991968 1.15285346 1.269372215 1.175802111 1 20.00419421 -8.028744099 21.2619906 0.999999998 1.218839962 0.512760989 0.06358983 333.248255 246504.3766 0.059576059 0.015382472 9.36E-09 8.028744099 0.218839964 KAPAGQEEPGT(ph)PPSSPLSAEQLDR ddPTM_HeLa_A486_30min_R1 4 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGT(0.925)PPS(0.074)S(0.001)PLSAEQLDR;KAPAGQEEPGT(0.994)PPS(0.006)SPLSAEQLDR;KAPAGQEEPGT(0.991)PPS(0.009)SPLSAEQLDR;KAPAGQEEPGT(0.959)PPS(0.039)S(0.002)PLSAEQLDR ;;; 170.32 2.75E-14 6525930000 2441070 2585750 1722230 872019 2779430 2389260 2751820 2864650 2112130 2861640 TRUE FALSE FALSE 2269963.599 2380845.753 2389123.579 2030104.301 2430807.972 2094497.393 2063285.53 2212431.73 2295211.129 2145066.718 1.058225173 1.109916877 1.113775884 0.946406135 1.133208563 0.976425291 0.961874758 1.031404623 1.069995217 1 21.03259109 -5.230261091 24.98813111 1.01920236 1.09556708 0.303389161 0.053331489 852.7185964 683418.2266 0.014338898 0.024832884 5.88E-06 5.230261091 0.07636472 KAPAGQEEPGTPPS(ph)SPLSAEQLDR ddPTM_HeLa_A485_30min_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGTPPS(0.499)S(0.499)PLS(0.002)AEQLDR 116.72 8.05E-05 251250000 175540 205550 145170 134780 188120 185780 206640 210370 122740 180670 TRUE FALSE FALSE 214588.2674 229587.2845 198874.424 142142.6901 169390.1123 195507.1535 162489.6759 158776.4277 147372.7922 135632.294 1.582132552 1.692718435 1.466276343 1.048000339 1.248892187 1.441449877 1.19801613 1.170638813 1.08656123 1 17.0493412 -1 0.232693573 1.040787001 4.777901983 0.656213504 0.132394845 33.45804567 0.44026776 0.206554401 47.82017762 0.1 1 3.737114983 KAPAGQEEPGTPPS(ph)SPLSAEQLDR ddPTM_HeLa_A486_30min_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGT(0.001)PPS(0.5)S(0.5)PLSAEQLDR 104.91 0.00022673 213740000 193080 197860 118740 62356 185080 156470 187210 161060 131650 177970 TRUE FALSE FALSE 179546.0891 182180.853 164719.308 145167.9193 161865.5406 137166.3223 140368.0779 124390.1539 143061.528 133405.1536 1.345870712 1.365620803 1.23472972 1.088173248 1.213337987 1.028193578 1.052193818 0.932423902 1.072383818 1 17.02545488 -5.093711855 0.544064678 0.992795863 1.472183466 0.828636954 0.058153114 0.707023835 0.294942114 0.038026094 0.194816618 8.06E-06 5.093711855 0.479387602 KAPAGQEEPGTPPSS(ph)PLSAEQLDR ddPTM_HeLa_A485_30min_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGTPPS(0.045)S(0.955)PLSAEQLDR 172.83 1.29E-14 212420000 169380 202320 137640 160540 198770 189290 214540 203330 143350 191410 TRUE FALSE FALSE 207057.9966 225979.564 188558.7637 169309.8937 178979.7609 199200.9317 168701.7764 153462.9987 172119.0301 143695.0096 1.44095468 1.572633348 1.312215116 1.178258689 1.245553073 1.38627592 1.174026689 1.067977232 1.197807986 1 17.13265043 -1 0.15297081 0.96185454 3.043264998 0.68293868 0.092817972 40.35572316 0.403610014 0.332810254 18.72719609 0.1 1 2.081410458 KAPAQK(ac)VPAQK ddPTM_HeLa_A485_30min_R1 1 KAPAQKVPAQK 11 2 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 K(0.1)APAQK(0.9)VPAQK 77.305 0.026639 0 23723 28670 26223 25650 35643 29545 34943 49686 25219 48864 FALSE TRUE FALSE 29000.09951 32022.7071 35923.97893 27051.19455 32094.25777 31091.93051 27477.14259 37500.4306 30280.22198 36683.10408 0.790557403 0.872955218 0.979305864 0.737429267 0.874905725 0.847581776 0.749040826 1.022280735 0.82545419 1 15.1628281 -8.220013258 0.787035775 0.9966557 0.846531077 0.207153371 0.085903146 1.483567733 1.910022164 0.082256761 0.029576625 6.03E-09 8.220013258 -0.150124624 KAPAQK(ac)VPAQK ddPTM_HeLa_A486_30min_R1 1 KAPAQKVPAQK 11 2 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 K(0.013)APAQK(0.987)VPAQK 101.93 0.0037172 0 46101 50173 32719 19294 58634 49046 56293 54019 38409 61843 FALSE TRUE FALSE 42869.55797 46197.10875 45388.67305 44917.40706 51279.57698 42995.20318 42207.89599 41720.05293 41738.32305 46357.11027 0.924767694 0.996548501 0.979109198 0.968943206 1.106185797 0.92747807 0.910494544 0.899970958 0.900365075 1 15.50050302 -6.486079195 24.97929706 0.919316741 0.995246405 0.302710364 0.050546815 643.1151221 436542.9834 0.017520995 0.015447475 3.27E-07 6.486079195 0.075929664 KAPDFVFYAPR ddPTM_HeLa_A485_30min_R1 2 KAPDFVFYAPR 11 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;E7EQR4;P15311;P26038 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 ; ; 125.54 0.00014806 313080000 533140 543600 440750 515930 557840 596630 701550 809670 445680 710170 FALSE FALSE TRUE 651735.1537 607169.2913 603801.7661 544113.9495 502299.4909 627868.6242 551658.1114 611097.163 535123.888 533137.6887 1.22245185 1.138860193 1.132543767 1.020588041 0.94215716 1.177685685 1.034738536 1.146227655 1.00372549 1 19.02414865 -4.734348005 1.729341459 1.054824288 1.21196576 0.398822479 0.068128773 0.474859342 2.504906516 0.019622676 0.091999338 1.84E-05 4.734348005 0.157141472 KAPDFVFYAPR ddPTM_HeLa_A486_30min_R1 2 KAPDFVFYAPR 11 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;E7EQR4;P15311;P26038 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 ; ; 126.1 0.00014294 324560000 542930 572300 438540 296580 721420 538620 612610 610590 509380 721820 FALSE FALSE TRUE 504873.4107 526948.8637 608354.4325 690453.2283 630932.7766 472170.5407 459328.4985 471571.9861 553533.4685 541071.5737 0.933099123 0.973898629 1.124351125 1.276084832 1.166080066 0.872658191 0.84892373 0.871551952 1.023031879 1 19.04545992 -6.266711297 24.98043972 0.910560803 1.09971533 0.403893834 0.103496259 470.0642238 2227343.635 0.040100639 0.036394617 5.41E-07 6.266711297 0.189154527 KAPEPEEEIEEVEES(ph)EDEGEDPALDSLSQAIAFQQAK ddPTM_HeLa_A485_30min_R1 2 KAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAK 37 1 G3V1V1;Q8TBF4 G3V1V1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 1 0 KAPEPEEEIEEVEES(0.965)EDEGEDPALDS(0.017)LS(0.017)QAIAFQQAK;KAPEPEEEIEEVEES(1)EDEGEDPALDSLSQAIAFQQAK ; 127.8 1.78E-06 59210000 21844 15330 15071 31507 24322 24183 33684 34239 18537.3 40324 TRUE FALSE FALSE 26703.12244 17122.71015 20646.39006 33228.14763 21900.41628 25449.18449 26487.13823 25841.83157 22257.56608 30271.96891 0.882107223 0.56562922 0.68202997 1.097653996 0.723455298 0.840684812 0.874972431 0.853655461 0.735253334 1 14.88569489 -12.85948466 0.026729284 2.0395726 6.24E-06 0.142319617 0.136696928 2973.393 7.259879774 384.351783 197.322278 1.38E-13 12.85948466 -2.039566359 KAPEPEEEIEEVEES(ph)EDEGEDPALDSLSQAIAFQQAK ddPTM_HeLa_A486_30min_R1 1 KAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAK 37 1 G3V1V1;Q8TBF4 G3V1V1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 1 0 KAPEPEEEIEEVEES(0.999)EDEGEDPALDSLSQAIAFQQAK 119.89 1.19E-05 23944000 14071 16784 6388.3 7853.1 14915 18208 19805 14934 10523 18897 TRUE FALSE FALSE 13084.69556 15453.97471 8862.020845 18282.41367 13044.22162 15961.68209 14849.57952 11533.85421 11435.14211 14165.0682 0.923729796 1.090991903 0.625625004 1.290668948 0.92087249 1.126834115 1.048323899 0.814246288 0.80727759 1 13.79004993 -1.023624701 9.783280835 0.968424242 0.417055829 0 0.179679804 0 0 0.039789451 0 0.094705521 1.023624701 -0.551368413 KAPEPPKTDK(ac)PGAAPPSTEER ddPTM_HeLa_A485_30min_R1 2 KAPEPPKTDKPGAAPPSTEER 21 3 Q93074-3;Q93074;Q93074-2;Q7Z3Z5 Q93074-3 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 0 1 ; KAPEPPKTDK(1)PGAAPPSTEER;KAPEPPKTDK(1)PGAAPPSTEER 156.74 1.78E-16 32514000 50660 39135 30067 58877 52645 49176 78269 84302 46339 89601 FALSE TRUE FALSE 61929.14223 43711.49782 41190.03449 62093.30143 47403.47895 51750.77932 61546.18875 63626.80232 55638.81225 67265.11968 0.920672445 0.649838996 0.612353545 0.923112926 0.704726003 0.769355344 0.91497925 0.945910787 0.827156965 1 16.03757097 -6.747865451 5.422525449 0.918552204 0.754966857 0.363233367 0.102673874 0.193534223 16.9623283 0.041237311 0.030003123 1.79E-07 6.747865451 -0.163585348 KAPEPPKTDK(ac)PGAAPPSTEER ddPTM_HeLa_A486_30min_R1 2 KAPEPPKTDKPGAAPPSTEER 21 3 Q93074-3;Q93074;Q93074-2;Q7Z3Z5 Q93074-3 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 0 1 ; K(0.001)APEPPK(0.065)TDK(0.933)PGAAPPSTEER;KAPEPPK(0.009)TDK(0.991)PGAAPPSTEER 97.253 0.00013527 31306000 37999.1 33935.1 18515.7 15028.1 31308.4 34347.5 43603 41957.2 24752.2 46778 FALSE TRUE FALSE 35335.55932 31245.95909 25685.47491 34986.17628 27381.40853 30110.05467 32693.06821 32404.46148 26897.74063 35064.48433 1.007730757 0.891099917 0.732521108 0.997766742 0.780887244 0.85870519 0.932369856 0.924139114 0.767093575 1 15.09772289 -6.731634339 24.96799383 0.899578972 0.873109452 0.016524004 0.095801203 1236.063371 1035461.929 0.035903855 0.027807009 1.86E-07 6.731634339 -0.026469519 KAPGFGGFGSSAVS(ph)GGSTAAMITETIIETDKPK ddPTM_HeLa_A486_30min_R1 1 KAPGFGGFGSSAVSGGSTAAMITETIIETDKPK 33 2 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 1 0 KAPGFGGFGSS(0.001)AVS(0.988)GGS(0.005)T(0.006)AAMITETIIETDKPK 88.149 9.03E-05 23961000 11127 10902 8060.9 6888.1 12623 14007 16729 12581 8540.7 16407 TRUE FALSE FALSE 10347.05476 10038.08582 11182.29636 16035.84491 11039.70564 12278.95875 12543.22726 9716.580941 9281.014753 12298.58041 0.841321064 0.816198739 0.909234724 1.303877714 0.897640644 0.998404559 1.019892284 0.790057114 0.754641141 1 13.58620418 -7.263436329 24.87400225 0.829261843 0.972502522 0.129339468 0.141502499 319.153052 3975293.594 0.075939558 0.039409032 5.45E-08 7.263436329 0.143240679 KAPLNIPGT(ph)PVLEDFPQNDDEK ddPTM_HeLa_A486_30min_R1 1 KAPLNIPGTPVLEDFPQNDDEK 22 1 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 KAPLNIPGT(1)PVLEDFPQNDDEK 136.67 6.75E-07 44085000 78872 75340 26462 27987 45313 69406 83446 61100 43543 119850 TRUE FALSE FALSE 73343.4801 69369.78402 36708.79508 65155.15038 39629.42101 60843.39339 62566.9282 47188.8638 47317.3423 89838.77991 0.816389984 0.772158572 0.408607453 0.725245272 0.441117088 0.677250887 0.69643564 0.525261628 0.526691729 1 16.45505071 -10.07506853 5.424815628 1.000003668 0.618045627 0.422808515 0.132799008 5.86E-06 9.99E-07 0.127821561 0.031000985 8.41E-11 10.07506853 -0.381958041 KAPPPPIS(ph)PTQLSDVSSPR ddPTM_HeLa_A485_30min_R1 4 KAPPPPISPTQLSDVSSPR 19 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 0 KAPPPPIS(0.939)PT(0.061)QLSDVSSPR;KAPPPPIS(0.999)PT(0.001)QLSDVSSPR;KAPPPPIS(0.754)PT(0.246)QLSDVSSPR;KAPPPPIS(0.978)PT(0.022)QLSDVSSPR ;;; 264.08 1.48E-58 2366240000 1026450 1351810 1197720 1034580 1496890 1349560 1534140 1713940 1199040 1402990 TRUE FALSE FALSE 1254780.261 1509892.42 1640806.469 1091096.486 1347854.376 1420220.875 1206358.456 1293593.528 1439676.33 1053250.413 1.191340868 1.433555023 1.557850297 1.035932644 1.279709325 1.348417107 1.145367181 1.228191807 1.36688893 1 20.00641705 -13.97114434 0.154887563 6.25E-14 1.368762715 0.262684368 0.142426521 186.2931299 1.698671301 57.7263991 0.677938397 1.07E-14 13.97114434 1.368762715 KAPPPPIS(ph)PTQLSDVSSPR ddPTM_HeLa_A486_30min_R1 3 KAPPPPISPTQLSDVSSPR 19 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 0 KAPPPPIS(0.994)PT(0.006)QLSDVSSPR;KAPPPPIS(0.989)PT(0.011)QLSDVSSPR;KAPPPPIS(0.97)PT(0.03)QLSDVSSPR ;; 210.32 3.43E-26 1284230000 1188970 1223480 993350 420620 1348390 1087220 1300590 1343790 1017970 1357640 TRUE FALSE FALSE 1105629.343 1126526.989 1378001.723 979224.617 1179262.353 953089.8504 975168.6258 1037838.352 1106208.459 1017678.107 1.086423433 1.106958066 1.354064427 0.962214486 1.158777362 0.936533707 0.958228952 1.01981004 1.086992489 1 19.95684988 -5.298251717 24.99962301 1.018375875 1.1749298 0.407709928 0.090979797 574.3351828 390035.6527 0.025703368 0.038125725 5.03E-06 5.298251717 0.156553925 KAPS(ph)PPSK ddPTM_HeLa_A486_30min_R1 2 KAPSPPSK 8 1 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2;A0A0B4J1Z0 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 KAPS(0.978)PPS(0.022)K;KAPS(0.958)PPS(0.042)K ; 51.286 0.030753 400530000 1175990 1267070 518180 776050 996570 1740690 1923760 1758220 1037240 2147020 TRUE FALSE FALSE 1093559.174 1166662.759 718833.1733 1806683.619 871570.898 1525941.366 1442414.901 1357911.688 1127148.798 1609392.217 0.67948581 0.72490891 0.446648844 1.122587521 0.541552823 0.948147599 0.896248214 0.843741925 0.700356809 1 20.61808453 -5.246103949 24.99897947 0.849483151 0.627803989 0.318664815 0.164673408 1055.465533 1720559.645 0.042423024 0.073119241 5.67E-06 5.246103949 -0.221679162 KAPS(ph)RDEPCSSTSRPALEEDVIYHVK ddPTM_HeLa_A486_30min_R1 2 KAPSRDEPCSSTSRPALEEDVIYHVK 26 3 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 KAPS(0.925)RDEPCS(0.024)S(0.024)T(0.024)S(0.004)RPALEEDVIYHVK;KAPS(0.482)RDEPCS(0.129)S(0.129)T(0.129)S(0.129)RPALEEDVIYHVK ; 124.9 9.32E-06 516870000 287041 285440 150139 157868 269496 353230 429740 396960 260206 448710 TRUE FALSE FALSE 266920.9082 262820.6948 208276.8417 367524.6822 235693.2987 309652.074 322214.5067 306580.8736 282760.8656 336350.0954 0.793580593 0.781390279 0.619226349 1.092684935 0.700738017 0.920624308 0.957973585 0.911493345 0.840674254 1 18.35960414 -5.246587141 24.99691358 0.906808117 0.736398209 0.391482747 0.105795854 888.6463478 1495625.598 0.027643792 0.047628994 5.67E-06 5.246587141 -0.170409908 KAPSTSHSGFPPVANGPRS(ph)PPSLR ddPTM_HeLa_A485_30min_R1 1 KAPSTSHSGFPPVANGPRSPPSLR 24 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 KAPSTSHSGFPPVANGPRS(0.992)PPS(0.008)LR 121.7 1.44E-05 775320000 325240 610900 553890 226220 964210 614540 787150 1194400 553320 426020 TRUE FALSE FALSE 397588.5159 682339.4409 758796.9603 238577.8258 868209.8669 646716.3641 618968.9721 901471.5273 664366.2486 319821.0543 1.243159294 2.133503819 2.372567253 0.745972858 2.714673894 2.022119418 1.935360301 2.81867474 2.077306168 1 18.28690539 -4.256781052 23.73500825 2.033434506 1.243158624 0.105083387 0.627927541 512.6064824 2611625.661 0.149808766 1.156073573 5.54E-05 4.256781052 -0.790275882 KAPT(ph)PQEK ddPTM_HeLa_A485_30min_R1 2 KAPTPQEK 8 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 KAPT(1)PQEK;KAPT(1)PQEK ; 78.342 0.0090275 708050000 3407700 1457550 513930 5924500 764580 3429500 1984260 2917900 1565450 5278800 TRUE FALSE FALSE 4165731.109 1627997.794 704054.0934 6248140.433 688455.7306 3609063.317 1560306.641 2202280.45 1879621.456 3962892.309 1.051184535 0.410810506 0.177661677 1.576661677 0.173725571 0.910714457 0.393729256 0.555725535 0.474305459 1 21.91812233 KAPT(ph)PQEK ddPTM_HeLa_A486_30min_R1 2 KAPTPQEK 8 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 KAPT(1)PQEK;KAPT(1)PQEK ; 57.175 0.034696 315360000 1350130 515800 722470 1321820 384150 3833200 1192380 1108310 1718450 3262800 TRUE FALSE FALSE 1255492.859 474926.1295 1002229.732 3077263.761 335966.3249 3360298.757 894033.9123 855972.0072 1867406.63 2445773.643 0.513331584 0.194182373 0.409780249 1.258196469 0.137366075 1.373920586 0.365542378 0.34998006 0.7635239 1 21.22185946 -5.026111454 24.8427274 0.71693748 0.34081285 0.168005461 0.381075487 1149.033799 1093204.191 0.098938833 0.17217279 9.42E-06 5.026111454 -0.37612463 KAQLDYVDLYLIHSPMS(ph)LKPGEELSPTDENGK ddPTM_HeLa_A485_30min_R1 1 KAQLDYVDLYLIHSPMSLKPGEELSPTDENGK 32 2 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 1 0 KAQLDYVDLYLIHS(0.009)PMS(0.709)LKPGEELS(0.227)PT(0.054)DENGK 83.854 0.00017452 141130000 34791 13194 11350 57728 18829 31418 49754 45261 18660 72435 TRUE FALSE FALSE 42530.13792 14736.92353 15548.83731 60881.53446 16954.31865 33062.9979 39123.65145 34160.66878 22404.89084 54378.28757 0.782116169 0.271007496 0.285938341 1.119592712 0.311784711 0.608018372 0.719471929 0.628204203 0.412019058 1 15.7307431 -11.07043427 2.425564022 1.638313213 0.569366963 0.206685769 0.252181483 31279873.23 9786251.788 110496165.6 0.063966069 8.50E-12 11.07043427 -1.06894625 KAQQELEEQTRR ddPTM_HeLa_A485_30min_R1 1 KAQQELEEQTRR 12 2 P26038 P26038 MSN Moesin 0 0 104.87 0.00047635 76037000 84330 122110 80865 77250 101750 118470 147240 169320 87735 137230 FALSE FALSE TRUE 103088.9176 136389.7023 110780.3286 81469.97189 91619.41273 124672.906 115780.9712 127794.0045 105342.6097 103021.0865 1.000658419 1.323900833 1.075317028 0.790808704 0.889326795 1.210168813 1.123857019 1.240464538 1.022534447 1 16.65258014 -6.28216191 24.9328911 1.134712242 1.023892306 0.105815219 0.146065608 1982.043232 2384742.719 0.056091251 0.049531185 5.22E-07 6.28216191 -0.110819936 KAQVS(ph)PQS ddPTM_HeLa_A485_30min_R1 2 KAQVSPQS 8 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KAQVS(0.992)PQS(0.008);KAQVS(1)PQS ; 92.445 0.0094735 19296600000 11865260 14611870 9371890 13668750 11411010 13565130 17146420 21378740 11910470 17241200 TRUE FALSE FALSE 14504646.15 16320601.09 12838942.11 14415439.2 10274889.78 14275379.23 13482947.29 16135570.49 14300792.08 12943286.14 1.120630881 1.2609318 0.991938366 1.11373874 0.793839344 1.102917688 1.041694292 1.246636312 1.104881088 1 23.62570061 -4.763719748 24.99896519 1.053062995 1.190781342 0.196747466 0.114036417 94.81875814 1039519.69 0.030638232 0.069135208 1.72E-05 4.763719748 0.137718347 KAQVS(ph)PQS ddPTM_HeLa_A486_30min_R1 1 KAQVSPQS 8 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KAQVS(1)PQS 86.189 0.012354 3568900000 2990100 1811200 1835400 957550 2008500 2920500 2646000 2183700 2398400 3038900 TRUE FALSE FALSE 2780509.431 1667673.916 2546116.034 2229224.792 1756575.201 2560198.403 1983942.813 1686519.18 2606295.243 2277939.66 1.220624707 0.732097494 1.117727602 0.978614505 0.771124553 1.123909666 0.870937386 0.740370436 1.144145865 1 21.1192981 -4.227064199 23.63191519 0.938733343 1.220625924 0.233692846 0.151196183 11994.75015 8245737.99 0.035596503 6.024354155 5.93E-05 4.227064199 0.281892581 KAQVS(ph)PQS(ph) ddPTM_HeLa_A485_30min_R1 2 KAQVSPQS 8 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KAQVS(1)PQS(1);KAQVS(1)PQS(1) ; 58.674 0.0070928 187620000 1014550 1300590 606990 1577030 746700 1457220 1336840 1823450 1227390 2007640 TRUE FALSE FALSE 1240233.147 1452682.687 831540.86 1663179.156 672355.9262 1533517.786 1051213.213 1376246.028 1473715.915 1507172.296 0.822887437 0.963846463 0.551722495 1.103509639 0.446104223 1.017480078 0.697473816 0.913131188 0.977801887 1 20.52341292 -7.491561241 5.469234313 0.977642134 0.803122217 0.1399244 0.191007465 0.350319229 30.27356625 0.106238265 0.046039865 3.22E-08 7.491561241 -0.174519916 KAS(ph)DVHEVR ddPTM_HeLa_A485_30min_R1 2 KASDVHEVR 9 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 KAS(1)DVHEVR;KAS(1)DVHEVR ; 105.95 0.00066642 423480000 496670 484270 325420 729180 528390 543860 754430 724450 485390 907220 TRUE FALSE FALSE 607152.528 540901.1639 445806.3999 769013.257 475781.6363 572335.6686 593239.8674 546777.5016 582803.3207 681066.7501 0.891472866 0.794196991 0.654570789 1.129130525 0.698582975 0.840351799 0.871045117 0.802825129 0.855721294 1 19.37743668 -13.99997463 0.461785491 5.039296892 0.833631711 0.140555137 0.120524571 3074.706475 17.05323158 12733.99192 0.060655514 1.00E-14 13.99997463 -4.205665181 KAS(ph)DVHEVR ddPTM_HeLa_A486_30min_R1 3 KASDVHEVR 9 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 KAS(1)DVHEVR;KAS(1)DVHEVR;KAS(1)DVHEVR ;; 101.39 0.001 429905000 629493 514313 381809 349303 533787 783040 796020 661088 563692 803930 TRUE FALSE FALSE 585368.7914 473556.9648 529655.67 813195.0368 466834.4571 686436.4862 596847.3766 510572.6938 612553.2764 602620.6953 0.97137187 0.785829243 0.878920479 1.349430982 0.774673789 1.139085484 0.990419647 0.847253833 1.01648231 1 19.20089069 -5.04206804 24.99997413 1.012762381 0.867043202 0.146195656 0.152163932 840.1708376 499291.3774 0.039848496 0.069028276 9.08E-06 5.04206804 -0.145719179 KAS(ph)EEIEDFR ddPTM_HeLa_A485_30min_R1 2 KASEEIEDFR 10 1 Q96FT9-3;Q96FT9 Q96FT9-3 IFT43 Intraflagellar transport protein 43 homolog 1 0 KAS(1)EEIEDFR;KAS(1)EEIEDFR ; 88.561 0.0020412 168140000 349420 318230 299800 551340 547420 386790 599040 671420 451920 868500 TRUE FALSE FALSE 427147.2735 355444.2303 410708.4957 581458.3081 492916.9427 407041.7263 471050.2103 506753.1923 542616.1987 651998.9336 0.655134927 0.545160754 0.629922036 0.89180868 0.756008817 0.624298147 0.722470829 0.777230094 0.832234795 1 19.31451008 -13.99999999 0.069665184 2.033078037 0.343675854 0.592375212 0.083648282 244.9700512 1.226804277 40.36525749 5.067596116 1.00E-14 13.99999999 -1.689402184 KAS(ph)EEIEDFR ddPTM_HeLa_A486_30min_R1 1 KASEEIEDFR 10 1 Q96FT9-3;Q96FT9 Q96FT9-3 IFT43 Intraflagellar transport protein 43 homolog 1 0 KAS(1)EEIEDFR 95.264 0.0014304 75581000 221920 249780 119080 125950 225730 362550 426580 468710 232930 430060 TRUE FALSE FALSE 206364.554 229986.5231 165190.9651 293217.9652 197416.8386 317822.2671 319845.1721 361994.9649 253120.5599 322370.1768 0.640147783 0.713423696 0.512426325 0.909569142 0.612391756 0.985892276 0.992167375 1.122917041 0.785186032 1 18.29835876 -6.269922562 24.43311315 0.985848313 0.683294181 0.602906264 0.12144387 313.404044 902657.7925 0.040752384 0.036529413 5.37E-07 6.269922562 -0.302554132 KAS(ph)FLR ddPTM_HeLa_A485_30min_R1 1 KASFLR 6 1 P46777;A0A2R8Y4A2 P46777 RPL5 60S ribosomal protein L5 1 0 KAS(1)FLR 94.302 0.0083552 354770000 558060 590670 498510 604900 731840 703940 890830 970100 644850 901960 TRUE FALSE FALSE 682198.5217 659743.7184 682929.5937 637944.1553 658975.44 740797.2099 700496.8931 732181.4539 774265.4801 677117.9713 1.007503198 0.974340877 1.00858288 0.942146247 0.973206247 1.094044526 1.034527103 1.081320368 1.143472058 1 19.36904768 -6.256332416 24.99145151 1.073496228 0.980133794 0.565090823 0.039221669 310.1124651 1517569.135 0.012888144 0.012508175 5.54E-07 6.256332416 -0.093362434 KAS(ph)FLR ddPTM_HeLa_A486_30min_R1 1 KASFLR 6 1 P46777;A0A2R8Y4A2 P46777 RPL5 60S ribosomal protein L5 1 0 KAS(1)FLR 80.165 0.012564 448810000 928680 984710 559610 352070 961190 912740 1087600 1267800 794630 1076700 TRUE FALSE FALSE 863584.3277 906677.9933 776305.9789 819636.7526 840628.5875 800135.4189 815470.9765 979149.6159 863509.1682 807087.3119 1.07000112 1.123395177 0.961861211 1.01554905 1.041558423 0.991386442 1.010387556 1.213189207 1.069907996 1 19.62236523 KAS(ph)GPPVSELITK ddPTM_HeLa_A485_30min_R1 2 KASGPPVSELITK 13 1 P16402;P10412;P16403 P16402;P10412;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 1 0 KAS(0.999)GPPVS(0.001)ELITK;KAS(1)GPPVSELITK ; 138.97 2.78E-06 848290000 860450 812500 645050 1455130 1344960 988010 1470320 2586700 1001050 3129800 TRUE FALSE FALSE 1051854.134 907514.8072 883680.8378 1534620.067 1211051.06 1039740.676 1156174.121 1952307.769 1201951.553 2349598.46 0.447673997 0.38624251 0.376098662 0.653141417 0.515428947 0.442518453 0.492073067 0.83091124 0.511556155 1 21.16398279 -14 0.115673188 2.641217833 0.256487493 0.670911412 0.11105021 93.00704376 0.704161058 35.44732083 1.202571991 1.00E-14 14 -2.384730341 KAS(ph)GPPVSELITK ddPTM_HeLa_A486_30min_R1 2 KASGPPVSELITK 13 1 P16402;P10412;P16403 P16402;P10412;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 1 0 KAS(0.999)GPPVS(0.001)ELITK;KAS(0.997)GPPVS(0.003)ELITK ; 164.49 4.47E-12 649490000 1620000 1707760 841560 796530 1570010 1900610 2407900 2243950 1169480 2243450 TRUE FALSE FALSE 1506446.366 1572430.878 1167434.57 1854362.094 1373084.706 1666132.062 1805417.952 1733051.57 1270851.468 1681675.518 0.895800855 0.935038217 0.694209173 1.102687216 0.816498006 0.990757161 1.073582824 1.030550515 0.755705518 1 20.68146793 -5.267972996 24.9956077 0.967530502 0.851018296 0.193719513 0.116796526 908.9809216 3477480.438 0.032302838 0.049206372 5.40E-06 5.267972996 -0.116512206 KAS(ph)GS(ph)ENEGDYNPGR ddPTM_HeLa_A485_30min_R1 2 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDY(0.001)NPGR ; 83.849 0.0011318 836630000 677190 702250 556380 1022300 886050 636070 985140 856080 658150 1320420 TRUE FALSE FALSE 827828.5792 784372.0287 762208.1149 1078145.66 797831.7509 669373.6416 774656.7911 646125.0377 790234.6681 991263.5945 0.835124566 0.791285015 0.768925762 1.087647793 0.804863364 0.675273101 0.781484154 0.651819598 0.797199325 1 19.91890922 -5.994858733 24.99748871 0.757264912 0.86885444 0.095517029 0.119980838 265.6116236 1291421.998 0.036607877 0.041372955 1.01E-06 5.994858733 0.111589528 KAS(ph)GS(ph)ENEGDYNPGR ddPTM_HeLa_A486_30min_R1 2 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 KAS(1)GS(1)ENEGDYNPGR;KAS(1)GS(1)ENEGDYNPGR ; 179.1 5.10E-18 564330000 851920 906190 495990 426770 755860 899760 1161400 1013750 828300 1283550 TRUE FALSE FALSE 792204.8073 834380.2041 688050.6111 993542.1278 661052.9907 788756.7593 870805.436 782941.255 900097.7109 962140.7255 0.823377274 0.86721223 0.715124714 1.032637016 0.687064764 0.819793548 0.905070758 0.81374921 0.935515655 1 19.8758884 -7.93519016 3.490540163 0.999401395 0.833939377 0.272704132 0.090728561 0.264579746 6.563338083 0.082102209 0.021818168 1.16E-08 7.93519016 -0.165462019 KAS(ph)GS(ph)ENEGDYNPGRK ddPTM_HeLa_A485_30min_R1 1 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 KAS(1)GS(1)ENEGDYNPGRK 86.136 0.0046481 536610000 541350 466480 239300 793590 570160 629560 1072800 1137900 360580 964830 TRUE FALSE FALSE 661771.4399 521030.7782 327827.0281 836941.8122 513392.8684 662522.7881 843587.516 858828.2408 432945.0986 724315.6374 0.913650632 0.719342164 0.452602445 1.155493226 0.708797162 0.914687954 1.164668375 1.185709926 0.597729879 1 19.466259 -5.268603081 24.9956602 0.964796784 0.697612787 0.25362265 0.208881578 770.2787723 2687664.234 0.059002497 0.089610808 5.39E-06 5.268603081 -0.267183997 KAS(ph)GS(ph)ENEGDYNPGRK ddPTM_HeLa_A486_30min_R1 2 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 KAS(0.996)GS(0.98)ENEGDY(0.024)NPGRK;KAS(1)GS(1)ENEGDYNPGRK ; 121.21 0.00018025 859920000 1909610 1581160 631510 1149910 1376260 1825340 2800000 2399600 1393810 3328100 TRUE FALSE FALSE 1775756.2 1455863.123 876047.5844 2677048.593 1203636.638 1600148.109 2099410.385 1853263.463 1514626.573 2494722.098 0.711805215 0.583577275 0.35116039 1.073084892 0.482473234 0.641413371 0.841540782 0.742873711 0.607132383 1 21.25044768 -13.99999999 0.158740835 2.206911098 0.581548505 0.224009906 0.185972524 202.0929297 1.849344725 76.88414085 0.796703112 1.00E-14 13.99999999 -1.625362593 KAS(ph)GSENEGDYNPGR ddPTM_HeLa_A485_30min_R1 1 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.654)GS(0.346)ENEGDYNPGR 147.1 4.19E-08 627720000 373820 307380 257250 459310 397560 357790 492580 420100 291880 564990 TRUE FALSE FALSE 456974.9693 343325.4171 352417.4801 484400.9423 357977.5305 376523.3312 387336.259 317069.8163 350457.6387 424148.3909 1.077394089 0.809446469 0.830882511 1.142055358 0.84399125 0.887716043 0.913209309 0.747544546 0.826261861 1 18.69420956 KAS(ph)GSENEGDYNPGR ddPTM_HeLa_A486_30min_R1 2 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.873)GS(0.127)ENEGDYNPGR;KAS(0.5)GS(0.5)ENEGDYNPGR ; 186.15 3.84E-18 1108270000 648800 718820 415830 268447 590780 670330 824890 676610 636210 874210 TRUE FALSE FALSE 603322.4704 661858.0853 576850.5123 624958.1826 516678.8636 587631.5 618493.7972 522560.6733 691357.1951 655302.1258 0.920678335 1.010004484 0.880281766 0.953694728 0.788459007 0.8967337 0.943829987 0.797434729 1.055020528 1 19.32180069 -7.785965767 24.99886644 1.027510409 0.901545105 0.384654441 0.065002688 278.4895235 283846.3047 0.062102914 0.016065061 1.64E-08 7.785965767 -0.125965305 KAS(ph)GSENEGDYNPGRK ddPTM_HeLa_A485_30min_R1 2 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.852)GS(0.148)ENEGDYNPGRK;KAS(0.5)GS(0.5)ENEGDYNPGRK ; 196.3 2.18E-19 803770000 516610 502870 257925 565219 550252 648180 908120 1085500 378421 738940 TRUE FALSE FALSE 631528.1122 561676.2721 353342.1907 596095.4828 495466.9788 682117.7025 714092.7433 819279.423 454366.6236 554735.8572 1.138430307 1.012511207 0.636955744 1.074557332 0.893158379 1.229626125 1.287266244 1.476882037 0.819068423 1 19.08144146 -6.264417992 24.31665107 1.20016731 0.943936839 0.196630834 0.206575925 252.6647022 2062679.723 0.070358427 0.064765967 5.44E-07 6.264417992 -0.256230471 KAS(ph)GSENEGDYNPGRK ddPTM_HeLa_A486_30min_R1 1 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.976)GS(0.024)ENEGDYNPGRK 154.19 1.36E-08 410840000 549710 455640 213120 216150 416470 437650 649980 600360 337690 660120 TRUE FALSE FALSE 511178.1677 419533.427 295645.7716 503208.1236 364232.4492 383657.1927 487348.1292 463671.1338 366961.2411 494821.6553 1.033055369 0.84784775 0.597479452 1.016948467 0.736088337 0.775344386 0.984896526 0.937046972 0.741603034 1 18.91654911 -6.752171647 24.96865424 0.910640555 0.828120703 0.077486224 0.136111736 548.7466905 1478408.697 0.052215337 0.039879745 1.77E-07 6.752171647 -0.082519851 KAS(ph)ISYFK ddPTM_HeLa_A485_30min_R1 2 KASISYFK 8 1 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 KAS(0.988)IS(0.012)YFK;KAS(0.999)IS(0.001)YFK ; 126.19 0.0003531 626450000 986070 887310 697910 1251680 1225390 1192410 1539700 1697690 895670 1554000 TRUE FALSE FALSE 1205417.87 991073.1859 956095.9515 1320056.109 1103385.869 1254842.744 1210730.517 1281328.866 1075422.753 1166616.399 1.033259836 0.849527905 0.819546127 1.131525418 0.945800067 1.075625839 1.03781373 1.098329208 0.92183065 1 20.15389883 -5.255693812 24.98903306 1.032930983 0.895652954 0.354570195 0.079824464 477.9262193 2078625.338 0.020979182 0.035101251 5.55E-06 5.255693812 -0.137278028 KAS(ph)ISYFK ddPTM_HeLa_A486_30min_R1 2 KASISYFK 8 1 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 KAS(0.984)IS(0.016)YFK;KAS(0.999)IS(0.001)YFK ; 133.32 0.00030041 979550000 980700 1255130 756720 584040 1574480 1588220 1899750 1831560 1140260 1938900 TRUE FALSE FALSE 911957.9943 1155668.928 1049742.25 1359674.636 1376994.037 1392281.564 1424412.456 1414553.771 1239098.655 1453386.82 0.62747094 0.795155778 0.722273131 0.935521512 0.947438093 0.957956647 0.980064245 0.973280995 0.852559441 1 20.4709873 -5.275590695 4.611156184 0.951421336 0.720640103 0.806064128 0.05273839 0.080157394 4.645256795 0.014426003 0.023315735 5.30E-06 5.275590695 -0.230781233 KAS(ph)PEAAS(ph)TPRDPIDVDLPEEAER ddPTM_HeLa_A485_30min_R1 1 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 2 0 KAS(1)PEAAS(0.53)T(0.47)PRDPIDVDLPEEAER 82.492 0.0030249 92495000 46763 51896 54423 63837 80024 55688 71803 77603 54455 88495 TRUE FALSE FALSE 57165.26802 57964.78576 74556.33243 67324.25367 72056.52958 58603.73757 56461.70247 58570.74257 65383.61901 66434.82513 0.860471416 0.872506034 1.122247741 1.013387986 1.084619843 0.882123757 0.849881103 0.881627105 0.984176881 1 16.01965208 -6.297911607 24.96242589 0.907808414 0.992657879 0.134641622 0.087534095 1097.755529 751325.915 0.032815039 0.028941235 5.04E-07 6.297911607 0.084849465 KAS(ph)PEAASTPR ddPTM_HeLa_A485_30min_R1 4 KASPEAASTPR 11 1 H3BT57;H3BUJ5;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;H3BT29;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 KAS(0.983)PEAAS(0.002)T(0.014)PR;KAS(0.992)PEAAS(0.008)TPR;KAS(0.999)PEAAS(0.001)T(0.001)PR;KAS(0.998)PEAAS(0.002)TPR ;;; 148.7 4.33E-07 3199778000 754844 787901 577595 919042 726203 697514 845474 665381 589533 1160623 TRUE FALSE FALSE 922756.4436 880039.1681 791271.4262 969246.9373 653899.6795 734034.7545 664831.573 502195.2665 707846.8656 871301.0458 1.05905582 1.010028821 0.90814929 1.112413375 0.750486508 0.84245825 0.76303314 0.576373997 0.812402176 1 19.73281175 -5.773139246 24.9999547 0.770806337 1.013365717 0.51090331 0.109841204 169.6441043 362489.6838 0.033444445 0.038229864 1.69E-06 5.773139246 0.24255938 KAS(ph)PEAASTPR ddPTM_HeLa_A486_30min_R1 4 KASPEAASTPR 11 1 H3BT57;H3BUJ5;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;H3BT29;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 KAS(1)PEAASTPR;KAS(1)PEAASTPR;KAS(0.999)PEAASTPR;KAS(1)PEAASTPR ;;; 144.29 5.84E-07 2984540000 808285 838311 520825 242021 669155 803443 796943 782522 700129 1003890 TRUE FALSE FALSE 751628.3955 771880.1833 722502.3882 563437.1191 585223.3403 704322.3715 597539.4322 604358.8229 760816.7454 752509.4098 0.998829232 1.02574157 0.960124058 0.748744284 0.777695711 0.935964869 0.794062406 0.803124606 1.011039511 1 19.5213501 -5.040606073 8.309322506 0.854902972 1.007727078 0.314822965 0.087191424 0.321320521 61.9610652 0.02319682 0.041007637 9.11E-06 5.040606073 0.152824106 KAS(ph)PEAASTPRDPIDVDLDVSNTTTAQK ddPTM_HeLa_A486_30min_R1 2 KASPEAASTPRDPIDVDLDVSNTTTAQK 28 2 H3BT57;H3BUJ5;P29590-11;P29590-12;P29590-13 H3BT57;P29590-11 PML Protein PML 1 0 KAS(0.994)PEAAS(0.003)T(0.003)PRDPIDVDLDVSNTTTAQK;KAS(0.849)PEAAS(0.076)T(0.076)PRDPIDVDLDVSNTTTAQK ; 235.29 4.39E-50 1778650000 680540 630050 293877 315340 636480 707690 939070 926300 482760 956690 TRUE FALSE FALSE 632837.6603 580122.5434 407674.0447 734127.4564 556646.7435 620382.4031 704104.7535 715401.711 524606.0255 717128.597 0.8824605 0.808951903 0.568481088 1.02370406 0.776216073 0.865092266 0.981838901 0.997591944 0.731536893 1 19.45187232 -5.280339036 24.91597453 0.906194974 0.758863191 0.2706762 0.118238372 1073.201144 1414830.312 0.033075111 0.0491504 5.24E-06 5.280339036 -0.147331783 KAS(ph)PEAASTPRDPIDVDLDVSNTTTAQKR ddPTM_HeLa_A485_30min_R1 1 KASPEAASTPRDPIDVDLDVSNTTTAQKR 29 3 H3BT57;H3BUJ5;P29590-11;P29590-12;P29590-13 H3BT57;P29590-11 PML Protein PML 1 0 KAS(0.99)PEAAS(0.005)T(0.005)PRDPIDVDLDVSNTTTAQKR 77.044 0.0037426 127250000 33148 33381 22751 40074 41271 47729 64357 89517 26059 54345 TRUE FALSE FALSE 40521.65824 37284.61757 31167.54165 42263.14115 37161.91433 50228.01664 50606.6012 67562.81539 31288.80227 40797.79165 0.993231658 0.913888131 0.763951684 1.035917373 0.910880536 1.231145477 1.240425012 1.656040993 0.766923919 1 15.31620344 -6.261684848 24.91800199 1.223754523 0.920409178 0.238094303 0.22118362 26.3147419 2671147.499 0.072656793 0.06810392 5.47E-07 6.261684848 -0.303345345 KAS(ph)PEAASTPRDPIDVDLPEEAER ddPTM_HeLa_A485_30min_R1 6 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 1 0 KAS(1)PEAASTPRDPIDVDLPEEAER;KAS(1)PEAASTPRDPIDVDLPEEAER;KAS(0.999)PEAASTPRDPIDVDLPEEAER;KAS(0.921)PEAAS(0.069)T(0.01)PRDPIDVDLPEEAER;KAS(0.995)PEAAS(0.002)T(0.003)PRDPIDVDLPEEAER;KAS(1)PEAASTPRDPIDVDLPEEAER ;;;;; 205.42 5.11E-29 6316310000 1326751 1382646 1267749 1569892 1884674 1850476 2465787 2448244 1324136 2262623 TRUE FALSE FALSE 1621882.183 1544334.422 1736742.111 1655651.225 1697029.239 1947364.062 1938951.464 1847808.32 1589877.95 1698592.727 0.954838766 0.909184643 1.022459406 0.974719366 0.999079539 1.146457318 1.141504631 1.087846599 0.935997149 1 20.69590855 -6.04923874 7.084811506 1.073115776 0.96782466 0.334994622 0.064084706 0.280072897 34.17177795 0.021989047 0.02225632 8.93E-07 6.04923874 -0.105291115 KAS(ph)PEAASTPRDPIDVDLPEEAER ddPTM_HeLa_A486_30min_R1 3 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 1 0 KAS(1)PEAASTPRDPIDVDLPEEAER;KAS(1)PEAASTPRDPIDVDLPEEAER;KAS(0.984)PEAAS(0.007)T(0.009)PRDPIDVDLPEEAER ;; 177.39 1.82E-15 3951740000 919380 969370 799644 374356 1190580 931010 1145790 1226160 885870 1159450 TRUE FALSE FALSE 854936.2097 892553.5908 1109287.572 871519.6869 1041246.355 816151.452 859101.2231 946990.1349 962657.9249 869116.1732 0.983684617 1.026966956 1.276339811 1.002765469 1.198051983 0.939059101 0.988476857 1.089601326 1.107628594 1 19.72918951 -6.266710289 24.97009207 1.028273497 1.098305484 0.127991432 0.094552273 1063.295027 5037179.208 0.033252858 0.030247974 5.41E-07 6.266710289 0.070031988 KAS(ph)PEPEGEAAGK ddPTM_HeLa_A485_30min_R1 8 KASPEPEGEAAGK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK ;;;;;;; 214.46 7.34E-23 13299520000 12246790 8304120 6071080 20315530 12904300 12001950 19761980 17182130 9616400 27200300 TRUE FALSE FALSE 14971046.18 9275214.598 8317025.131 21425315.96 11619502.58 12630353.54 15539671.53 12968185.68 11546323.27 20419765.79 0.733164442 0.454227276 0.40730267 1.049243962 0.569032118 0.618535671 0.761011252 0.63508004 0.565448369 1 24.28346298 -11.3079149 2.131471737 2.616506741 0.643340299 0.282365763 0.170417868 11683136.14 1501008.541 90976116.32 0.043021279 4.92E-12 11.3079149 -1.973166442 KAS(ph)PEPEGEAAGK ddPTM_HeLa_A486_30min_R1 8 KASPEPEGEAAGK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK ;;;;;;; 166.77 3.74E-12 16151110000 10991200 10885010 4515860 6966810 9132790 13684640 17588490 15935930 8401140 18780820 TRUE FALSE FALSE 10220773.64 10022442.17 6264521.931 16219085.76 7987270.318 11996368.25 13187663.77 12307666.62 9129357.579 14077980.43 0.726011354 0.711923292 0.44498726 1.152088955 0.567359101 0.852137017 0.936758212 0.874249448 0.648484889 1 23.74693705 -5.24036045 24.99909809 0.846822403 0.636068945 0.278451935 0.171263921 1169.960738 1387543.55 0.044704616 0.077329663 5.75E-06 5.24036045 -0.210753458 KAS(ph)PEPPDSAEGALK ddPTM_HeLa_A485_30min_R1 5 KASPEPPDSAEGALK 15 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK ;;;; 172.24 1.51E-12 13256360000 4062220 2469780 1898940 6323590 3875200 3124900 5838910 3924070 2778410 8189800 TRUE FALSE FALSE 4965846.825 2758599.287 2601436.927 6669031.71 3489371.481 3288514.932 4591379.179 2961685.68 3336011.402 6148233.582 0.807686754 0.448681601 0.423119404 1.084706952 0.567540487 0.534871502 0.746780212 0.481713266 0.542596724 1 22.55174055 -10.09180242 4.906233257 1.000011062 0.623544239 0.253244141 0.192401007 2.76E-05 5.11E-06 0.185454434 0.044977733 8.09E-11 10.09180242 -0.376466823 KAS(ph)PEPPDSAEGALK ddPTM_HeLa_A486_30min_R1 10 KASPEPPDSAEGALK 15 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK;KAS(0.822)PEPPDS(0.178)AEGALK;KAS(1)PEPPDSAEGALK;KAS(1)PEPPDSAEGALK ;;;;;;;;; 207.56 8.48E-26 19557720000 10038769 9631043 3901946 5196466 8170106 12132665 15356060 13532370 7347294 15470450 TRUE FALSE FALSE 9335103.133 8867844.077 5412883.989 12097635.46 7145335.122 10635860.15 11513811.37 10451344.76 7984163.36 11596548.62 0.804989781 0.764696839 0.466766808 1.043209998 0.616160493 0.91715738 0.992865355 0.901246147 0.688494794 1 23.46719216 -6.291642735 24.42415329 0.899587691 0.742341393 0.204988876 0.158260703 895.8813361 724457.3964 0.054617336 0.048174765 5.11E-07 6.291642735 -0.157246298 KAS(ph)PEPPDSAEGALKLGEEQQR ddPTM_HeLa_A485_30min_R1 4 KASPEPPDSAEGALKLGEEQQR 22 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 KAS(1)PEPPDSAEGALKLGEEQQR;KAS(1)PEPPDSAEGALKLGEEQQR;KAS(1)PEPPDSAEGALKLGEEQQR;KAS(1)PEPPDSAEGALKLGEEQQR ;;; 175.46 8.03E-15 3497970000 898750 1361460 627086 686696 1422940 2096700 3367740 4683670 774760 1167630 TRUE FALSE FALSE 1098673.837 1520670.904 859071.2066 724208.4637 1281267.097 2206479.97 2648194.837 3534992.589 930247.2255 876561.3296 1.253390721 1.734814043 0.980046892 0.826192577 1.461697036 2.517199761 3.021117573 4.032795504 1.061246024 1 19.74149551 -6.216897496 4.059328248 2.567289142 1.217196636 0.259097047 0.869897143 0.255471084 9.137383707 0.294730097 0.286290075 6.07E-07 6.216897496 -1.350092506 KAS(ph)PEPPDSAEGALKLGEEQQR ddPTM_HeLa_A486_30min_R1 4 KASPEPPDSAEGALKLGEEQQR 22 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 KAS(1)PEPPDSAEGALKLGEEQQR;KAS(1)PEPPDSAEGALKLGEEQQR;KAS(1)PEPPDSAEGALKLGEEQQR;KAS(1)PEPPDSAEGALKLGEEQQR ;;; 170.1 2.26E-14 1657930000 811010 550588 277352 444208 855910 594302 1149600 1170470 314811 1373900 TRUE FALSE FALSE 754162.3871 506957.4017 384750.1221 1034138.673 748553.7868 520983.0617 861957.9208 903979.5322 342099.071 1029866.497 0.732291408 0.492255455 0.373592231 1.004148281 0.726845459 0.505874366 0.836960832 0.877763802 0.332178075 1 19.9740259 -11.57872883 2.219450152 7.533291091 0.660681485 0.193500941 0.211740781 8014180.185 588501.1199 263648798.2 0.052887282 2.64E-12 11.57872883 -6.872609606 KAS(ph)PPSGLWSPAYASH ddPTM_HeLa_A485_30min_R1 1 KASPPSGLWSPAYASH 16 1 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 0 KAS(0.985)PPS(0.015)GLWSPAYASH 93.5 0.00050974 386430000 453330 492140 290170 424100 432330 490170 536390 886770 351170 810640 TRUE FALSE FALSE 554171.6945 549691.492 397515.958 447267.5091 389285.7072 515834.5433 421785.8946 669288.2671 421646.5979 608562.3667 0.910624325 0.90326238 0.653204963 0.734957555 0.639680875 0.847628068 0.693085734 1.099785829 0.692856839 1 19.2150456 -10.16347908 5.787851832 1.000002924 0.796966621 0.163463652 0.137609719 5.18E-06 7.49E-07 0.1330255 0.032262958 6.86E-11 10.16347908 -0.203036303 QKS(ph)EEPSVSIPFLQTALLR ddPTM_HeLa_A485_30min_R1 2 QKSEEPSVSIPFLQTALLR 19 1 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 QKS(0.999)EEPS(0.001)VSIPFLQTALLR;QKS(0.999)EEPS(0.001)VSIPFLQTALLR ; 81.48 0.0010287 228350000 105488 113464 85389 164010 192083 160251 267980 358600 202404 378510 TRUE FALSE FALSE 128953.4417 126732.6278 116977.9444 172969.451 172958.5421 168641.4946 210723.8838 270652.7877 243024.6262 284154.423 0.453814656 0.445999138 0.411670328 0.608716378 0.608677987 0.593485376 0.741582276 0.952484867 0.855255476 1 18.11631565 -6.759225659 0.579933575 1.008111213 0.427372478 0.9183852 0.057498169 0.219966696 0.152755156 0.054779216 0.042135328 1.74E-07 6.759225659 -0.580738734 down KAS(ph)SPNLHR ddPTM_HeLa_A485_30min_R1 2 KASSPNLHR 9 1 A0A087X030;P51956-2;P51956 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 KAS(0.5)S(0.5)PNLHR;KAS(0.5)S(0.5)PNLHR ; 113.63 0.00063648 87291000 91110 88769 80921 102648 115937 106268 119756 119984 100639 153314 TRUE FALSE FALSE 111377.1052 99149.76236 110857.0453 108255.4003 104393.9052 111832.0282 94169.15228 90557.73587 120836.3242 115095.6413 0.967691773 0.861455405 0.963173271 0.94056907 0.907018754 0.971644337 0.818181742 0.786804216 1.0498775 1 16.81247367 KAS(ph)SPNLHR ddPTM_HeLa_A486_30min_R1 1 KASSPNLHR 9 1 A0A087X030;P51956-2;P51956 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 KAS(0.698)S(0.302)PNLHR 114.02 0.0004396 170520000 283560 285260 226790 65520 279450 325870 364600 305400 289460 327690 TRUE FALSE FALSE 263683.9083 262654.9587 314609.1616 152533.8712 244398.7752 285667.4726 273373.2237 235867.0868 314550.6259 245634.2911 1.073481667 1.069292718 1.280803101 0.620979549 0.9949701 1.162978798 1.112927769 0.960236805 1.280564796 1 17.90615245 -6.239055234 23.11258002 1.101455572 1.004980908 0.07065711 0.172828331 974.8696465 1006592.773 0.058257565 0.058195399 5.77E-07 6.239055234 -0.096474664 KAS(ph)SPSPLTIGTPESQR ddPTM_HeLa_A485_30min_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.621)S(0.368)PS(0.011)PLTIGTPESQR 159.14 2.32E-09 692070000 196870 213570 183790 199380 309990 220060 327020 357960 226350 300500 TRUE FALSE FALSE 240663.0523 238545.1537 251781.5691 210271.6245 279126.3072 231582.0013 257149.5055 270169.7487 271776.3688 225590.8803 1.066811974 1.057423746 1.116098172 0.932092752 1.237312017 1.026557461 1.139893178 1.197609355 1.204731186 1 17.78334922 -5.768927991 24.99999092 1.139118456 1.049342986 0.224616938 0.082442158 263.8875911 880961.4691 0.024706819 0.028571871 1.70E-06 5.768927991 -0.089775471 KAS(ph)SPSPLTIGTPESQR ddPTM_HeLa_A486_30min_R1 2 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.499)S(0.499)PS(0.001)PLTIGTPESQR;KAS(0.744)S(0.253)PS(0.003)PLTIGTPESQR ; 173.43 1.42E-12 1578570000 668690 806330 530860 340650 858750 787990 960060 879140 529780 963930 TRUE FALSE FALSE 621818.2841 742433.4742 736423.2089 793050.4155 751037.5675 690775.8055 719842.8335 678979.0135 575701.757 722555.6539 0.860581854 1.027510435 1.019192369 1.097563089 1.039418297 0.956017439 0.996245521 0.939690956 0.796757667 1 19.46274919 -7.388141789 3.490911342 0.891080634 1.005273353 0.229015391 0.074193525 0.321176996 7.077455948 0.046980038 0.019903393 4.09E-08 7.388141789 0.114192719 KASATCSSATAAASSGLEEWTSRS(ph)PR ddPTM_HeLa_A485_30min_R1 4 KASATCSSATAAASSGLEEWTSRSPR 26 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 KASATCSSATAAASSGLEEWT(0.002)S(0.02)RS(0.978)PR;KASATCSSATAAASSGLEEWT(0.002)S(0.022)RS(0.976)PR;KASATCSSATAAASSGLEEWT(0.029)S(0.049)RS(0.922)PR;KASATCSSATAAASSGLEEWT(0.083)S(0.11)RS(0.807)PR ;;; 250.72 1.24E-50 3786160000 1256820 2125280 1744760 1327100 2871790 2454810 3019410 4144570 1870860 2078040 TRUE FALSE FALSE 1536395.273 2373813.009 2390219.33 1399596.113 2585864.504 2583340.056 2374288.387 3128107.709 2246324.441 1560022.871 0.984854326 1.521652696 1.532169414 0.897163842 1.657581149 1.655962937 1.521957422 2.005167851 1.439930454 1 20.57313575 -5.845412061 24.99999994 1.601247359 1.275686622 0.186330387 0.302866001 39.33811457 11706.72907 0.09036582 0.102465244 1.43E-06 5.845412061 -0.325560736 KASATCSSATAAASSGLEEWTSRS(ph)PR ddPTM_HeLa_A486_30min_R1 3 KASATCSSATAAASSGLEEWTSRSPR 26 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 KASATCSSATAAASSGLEEWT(0.001)S(0.007)RS(0.991)PR;KASATCSSATAAAS(0.076)S(0.225)GLEEWT(0.148)S(0.148)RS(0.402)PR;KASATCSSATAAASSGLEEWT(0.106)S(0.259)RS(0.635)PR ;; 296.35 1.91E-90 2327740000 1374150 1404258 1338394 701212 2412576 1546897 1975304 2231512 1166022 1598511 TRUE FALSE FALSE 1277829.181 1292979.482 1856656 1632456.973 2109968.222 1356056.576 1481062.047 1723445.431 1267093.726 1198233.441 1.066427574 1.079071438 1.549494395 1.362386424 1.760899128 1.131713178 1.236037984 1.438321926 1.057468171 1 20.19247757 -7.85396 5.945079027 1.007825485 1.332641418 0.251493642 0.206948532 0.305833104 15.2221823 0.206366474 0.053796942 1.40E-08 7.85396 0.324815933 KASDVHEVR ddPTM_HeLa_A485_30min_R1 6 KASDVHEVR 9 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;; ;;;;; 112.75 0.0010984 757529000 2931313 2228860 1344428 2245939 1148509 3791841 2127415 3362650 2256148 2787839 FALSE FALSE TRUE 3583373.464 2489505.788 1841787.864 2368628.961 1034159.411 3990375.931 1672875.406 2537954.815 2708936.209 2092882.044 1.712171727 1.189510797 0.880024686 1.131754638 0.494131723 1.906641582 0.799316622 1.212660227 1.29435685 1 20.99705957 -4.282740968 3.956191407 1.093367324 1.757176067 0.220007684 0.349079452 0.325306237 10.4327164 0.083884309 0.598352657 5.22E-05 4.282740968 0.663808742 KASDVHEVR ddPTM_HeLa_A486_30min_R1 4 KASDVHEVR 9 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 103.7 0.001798 263115000 1041800 709030 1500310 332353 1605190 2498350 946720 953850 1681020 1196530 FALSE FALSE TRUE 968775.1999 652843.8806 2081270.212 773734.5802 1403852.102 2190128.978 709840.6426 736679.1774 1826732.167 896911.0999 1.080123994 0.727880256 2.320486626 0.862665854 1.565207636 2.441857369 0.791428094 0.821351389 2.036692563 1 19.77460547 -10.18558752 3.775560894 0.999688369 1.396292899 0.036225168 0.625611562 211164118.7 339937561 823020.1762 0.154462922 6.52E-11 10.18558752 0.39660453 KASGS(ph)ENEGDYNPGR ddPTM_HeLa_A485_30min_R1 1 KASGSENEGDYNPGR 15 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.122)GS(0.878)ENEGDYNPGR 150.23 3.17E-08 721950000 274570 258070 213370 346120 351810 280020 397990 397300 267960 442890 TRUE FALSE FALSE 335647.1492 288249.0416 292304.4421 365027.6592 316782.5611 294681.4142 312956.1852 299861.5521 321737.1141 332485.6738 1.009508607 0.866951765 0.879148983 1.09787485 0.952770559 0.88629808 0.941262165 0.901878113 0.967672112 1 18.34293265 -6.790336721 0.003155215 1.894361178 3.96E-07 0.012284699 0.067839204 138306.6643 271.6133696 81155.66032 81907.11349 1.62E-07 6.790336721 -1.894360782 KASGS(ph)ENEGDYNPGRK ddPTM_HeLa_A486_30min_R1 1 KASGSENEGDYNPGRK 16 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.431)GS(0.569)ENEGDYNPGRK 75.533 0.0044114 182450000 102980 91035 38804 43885 81998 78329 120000 119250 64097 138270 TRUE FALSE FALSE 95761.63379 83821.05506 53829.94801 102166.4978 71713.04624 68665.56437 89974.73077 92099.37821 69652.97957 103646.292 0.923927252 0.808722178 0.519362024 0.985722652 0.691901706 0.662498996 0.868094063 0.888593083 0.672025774 1 16.66130898 -10.5790123 2.777427694 1.014948745 0.77904229 0.190765172 0.135861368 37884836.37 37531152.38 4169356.991 0.033008619 2.64E-11 10.5790123 -0.235906455 KASPEAAST(ph)PRDPIDVDLPEEAER ddPTM_HeLa_A486_30min_R1 1 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 1 0 KAS(0.085)PEAAS(0.174)T(0.74)PRDPIDVDLPEEAER 134.21 1.25E-05 948370000 300190 304930 182940 136390 395130 323780 400210 418330 263100 410260 TRUE FALSE FALSE 279148.2312 280766.2363 253779.2673 317522.8128 345569.111 283835.3156 300073.225 323085.3911 285905.7198 307528.2257 0.907715806 0.912977128 0.825222682 1.032499739 1.123698842 0.922956958 0.975758321 1.050587764 0.929689362 1 18.2303593 -5.271600742 24.99116265 1.007440621 0.885072396 0.474637829 0.059262872 600.4116624 1476669.559 0.017031287 0.025593766 5.35E-06 5.271600742 -0.122368225 KASS(ph)EGGTAAGAGLDSLHK ddPTM_HeLa_A486_30min_R1 1 KASSEGGTAAGAGLDSLHK 19 1 A0A1W2PNV4;C9JEY1;C9K057;O15143 A0A1W2PNV4 ARPC1B Actin-related protein 2/3 complex subunit 1B 1 0 KAS(0.317)S(0.681)EGGT(0.002)AAGAGLDSLHK 277.27 1.44E-69 413030000 342160 310580 146100 31994 300480 325320 448000 456890 329700 429950 TRUE FALSE FALSE 318176.3509 285968.5097 202673.8327 74483.64889 262790.9965 285185.326 335905.6615 352866.1208 358278.6615 322287.7215 0.987243167 0.887308112 0.628859926 0.231109173 0.815392517 0.884878036 1.042253983 1.094879194 1.11167332 1 18.2979897 -6.469306949 2.17814492 1.071708393 0.686894749 0.434541512 0.190101172 0.326856425 3.083913463 0.089802154 0.071931703 3.39E-07 6.469306949 -0.384813644 KASS(ph)PNLHR ddPTM_HeLa_A485_30min_R1 2 KASSPNLHR 9 1 A0A087X030;P51956-2;P51956 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 KAS(0.137)S(0.863)PNLHR;KAS(0.185)S(0.815)PNLHR ; 143.97 8.94E-05 243210000 475790 509650 423910 547860 625370 539260 695530 697830 539440 813790 TRUE FALSE FALSE 581627.844 569249.1341 580731.9494 577788.2045 563105.967 567494.8197 546924.3335 526686.0983 647700.66 610927.1297 0.952041276 0.931779105 0.950574825 0.945756337 0.921723622 0.928907544 0.895236612 0.862109526 1.060192989 1 19.22064078 -7.772469163 24.99997752 1.030096534 0.92461215 0.680398345 0.029210909 143.0955162 324327.8452 0.028346517 0.007597512 1.69E-08 7.772469163 -0.105484384 KASS(ph)PNLHR ddPTM_HeLa_A486_30min_R1 1 KASSPNLHR 9 1 A0A087X030;P51956-2;P51956 A0A087X030 NEK3 Serine/threonine-protein kinase Nek3 1 0 KAS(0.097)S(0.903)PNLHR 107.17 0.00063228 151640000 327590 312090 255910 62779 319290 382300 410510 378110 335110 342060 TRUE FALSE FALSE 304627.6327 287358.8518 355005.2055 146152.6847 279241.6709 335135.7129 307796.0561 292022.6071 364157.6046 256405.9496 1.188067723 1.120718346 1.384543557 0.570005044 1.089060809 1.307051235 1.200424782 1.138907298 1.420238513 1 17.96807021 -6.124018077 7.398428071 1.220351435 1.060817679 0.098027034 0.216492758 0.642555239 36.01602756 0.07232884 0.072439116 7.52E-07 6.124018077 -0.159533756 KASS(ph)PS(ph)PLTIGTPESQR ddPTM_HeLa_A485_30min_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 0 KAS(0.471)S(0.529)PS(0.988)PLT(0.01)IGT(0.001)PESQR 52.03 0.0043416 0 128480 145050 114400 179320 190520 154700 214150 207200 123000 255970 TRUE FALSE FALSE 157059.9327 162012.3357 156721.3206 189115.7975 171551.1598 162799.8528 168395.1031 156383.8751 147684.9718 192161.3898 0.817333456 0.843105558 0.815571332 0.984150863 0.892745208 0.847203764 0.876321218 0.813815279 0.768546543 1 17.55195896 KASS(ph)PSPLTIGTPESQR ddPTM_HeLa_A485_30min_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.013)S(0.945)PS(0.043)PLTIGTPESQR 160.52 5.09E-12 712350000 196300 229640 184000 250980 330150 297610 353250 411720 231210 372770 TRUE FALSE FALSE 239966.2578 256494.4004 252069.2569 264690.4019 297279.1068 313192.3994 277775.2517 310745.0244 277611.7262 279845.2993 0.857496118 0.91655783 0.90074501 0.945845446 1.062298018 1.119162624 0.992602886 1.110417167 0.992018543 1 18.09426999 -5.615197559 3.25134177 1.052745644 0.89626817 0.710396301 0.044827285 0.125383605 2.640478335 0.013234577 0.017835818 2.43E-06 5.615197559 -0.156477474 KASSPS(ph)PLTIGT(ph)PESQR ddPTM_HeLa_A485_30min_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 0 KAS(0.007)S(0.009)PS(0.984)PLT(0.005)IGT(0.994)PESQR 115.01 8.30E-05 463510000 173920 226750 199470 234760 277800 239150 299610 315810 219490 284970 TRUE FALSE FALSE 212607.904 253266.44 273262.2536 247584.3444 250141.2566 251671.5242 235595.8759 238357.1023 263539.6297 213932.2235 0.993809631 1.183862982 1.277330966 1.157302721 1.169254694 1.176407743 1.101264092 1.114171107 1.23188375 1 17.70679428 -9.836430131 5.703098595 0.999999963 1.158689923 0.29239948 0.072773167 3.40E-08 7.01E-09 0.070642761 0.017133382 1.46E-10 9.836430131 0.158689959 KASSPS(ph)PLTIGTPESQR ddPTM_HeLa_A485_30min_R1 4 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 KASS(0.001)PS(0.999)PLTIGTPESQR;KASS(0.001)PS(0.997)PLT(0.002)IGTPESQR;KAS(0.001)S(0.004)PS(0.995)PLTIGTPESQR;KASSPS(0.985)PLT(0.014)IGTPESQR ;;; 168.4 2.85E-12 5571100000 2237760 2960720 2424770 2256340 3404380 3093350 4089360 4657410 2530250 3273300 TRUE FALSE FALSE 2735541.992 3306950.449 3321793.326 2379598.141 3065427.974 3255313.023 3215634.829 3515172.895 3038047.966 2457326.551 1.11321875 1.34575132 1.351791574 0.96836871 1.247464637 1.324737659 1.308590764 1.430486678 1.236322444 1 21.22865816 -5.99910797 24.99973888 1.289538481 1.203172986 0.023152884 0.146210028 91.29874666 2558565.531 0.045243081 0.050852062 1.00E-06 5.99910797 -0.086365496 KASSPS(ph)PLTIGTPESQR ddPTM_HeLa_A486_30min_R1 5 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.063)S(0.063)PS(0.871)PLT(0.004)IGTPESQR;KAS(0.001)S(0.003)PS(0.98)PLT(0.016)IGTPESQR;KAS(0.014)S(0.005)PS(0.981)PLTIGTPESQR;KASSPS(1)PLTIGTPESQR;KASSPS(0.999)PLTIGTPESQR ;;;; 180.44 8.85E-18 7210600000 4120390 4103860 2918420 1488200 4752380 3696200 4375330 4539560 2884209 4352530 TRUE FALSE FALSE 3831571.939 3778655.188 4048510.382 3464604.809 4156292.186 3240200.424 3280576.156 3506001.286 3134214.558 3262628.158 1.174382048 1.158162992 1.240873978 1.06190612 1.273909249 0.993125869 1.005501086 1.074594197 0.960641056 1 21.63760314 -6.279328391 24.99618542 1.011355106 1.177147015 0.691191724 0.05842874 473.1596379 661140.2495 0.019282425 0.017041221 5.26E-07 6.279328391 0.165791909 KASVVDPSTESSPAPQEGSEQPASPAS(ph)PLSSR ddPTM_HeLa_A485_30min_R1 3 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14-2;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 0 KASVVDPSTESSPAPQEGSEQPAS(0.002)PAS(0.76)PLS(0.119)S(0.119)R;KASVVDPSTESSPAPQEGSEQPASPAS(1)PLSSR;KASVVDPSTESSPAPQEGSEQPAS(0.017)PAS(0.982)PLSSR ;; 310.14 2.14E-109 2491520000 987970 1294670 1121270 926960 1403560 1440640 1605100 1833770 1174580 1367770 TRUE FALSE FALSE 1207740.518 1446070.394 1536074.433 977597.4776 1263816.638 1516069.683 1262157.273 1384035.032 1410307.432 1026810.111 1.176206297 1.408313357 1.495967381 0.952072313 1.230818264 1.476484957 1.229202225 1.347897744 1.373484169 1 19.96973798 -10.10772386 4.734195177 0.999984587 1.300355775 0.254807347 0.153349596 2.94E-05 5.54E-06 0.150510753 0.036502042 7.80E-11 10.10772386 0.300371189 KASVVDPSTESSPAPQEGSEQPASPAS(ph)PLSSR ddPTM_HeLa_A486_30min_R1 3 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14-2;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 0 KASVVDPSTESSPAPQEGSEQPAS(0.006)PAS(0.74)PLS(0.127)S(0.127)R;KASVVDPSTESSPAPQEGSEQPAS(0.002)PAS(0.971)PLS(0.014)S(0.014)R;KASVVDPSTESSPAPQEGSEQPASPAS(0.999)PLS(0.001)S(0.001)R ;; 240.71 9.97E-51 2724090000 1036300 996890 783600 316412 1167480 925270 1082440 1164340 888890 1183310 TRUE FALSE FALSE 963660.7215 917892.8058 1087030.906 736623.1266 1021043.772 811119.5949 811602.0631 899245.1994 965939.7009 887001.4739 1.086425164 1.034826697 1.225511949 0.830464377 1.151118462 0.914451237 0.914995169 1.013803501 1.088994471 1 19.75857698 -5.249042073 24.96427564 0.988993745 1.107511793 0.26889159 0.096351956 1088.647669 2192189.89 0.025367408 0.043530014 5.64E-06 5.249042073 0.118518048 KATATISAK(ac)PQITNPK ddPTM_HeLa_A485_30min_R1 1 KATATISAKPQITNPK 16 2 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 0 1 KATATISAK(1)PQITNPK 110.12 0.0026275 13880000 24921 32895 24014 28809 39067 38059 47111 62077 32428 46760 FALSE TRUE FALSE 30464.59047 36741.7841 32897.77791 30382.76272 35177.35231 40051.71039 37045.34999 46852.51842 38936.00215 35103.59255 0.867848225 1.046667347 0.937162709 0.865517188 1.002101202 1.140957591 1.055315063 1.334692976 1.109174284 1 15.09933107 -6.166780174 3.053876064 1.14677769 0.937391692 0.492485907 0.094410704 0.216038777 3.890282026 0.033028323 0.03264768 6.81E-07 6.166780174 -0.209385998 KATDHPHPS(ph)TPATAR ddPTM_HeLa_A486_30min_R1 2 KATDHPHPSTPATAR 15 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 KATDHPHPS(0.493)T(0.493)PAT(0.014)AR;KATDHPHPS(0.497)T(0.497)PAT(0.005)AR ; 93.5 0.00082339 138978000 316920 347010 372230 25109 500190 243940 300600 318520 289170 107268 TRUE FALSE FALSE 294705.5446 319511.6638 516367.4247 58455.02094 437451.5061 213845.163 225386.7006 245999.9492 314235.4884 80407.3946 3.665154754 3.973660201 6.421889768 0.726985636 5.440438759 2.659521106 2.803059367 3.059419478 3.908042164 1 16.29504056 -9.12835548 0.205603181 9.56E-13 4.513619794 0.239519681 1.455749123 15.38462839 1.110789483 17.94230008 4.529199501 7.44E-10 9.12835548 4.513619794 KATDHPHPST(ph)PATAR ddPTM_HeLa_A486_30min_R1 1 KATDHPHPSTPATAR 15 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 KATDHPHPS(0.083)T(0.899)PAT(0.018)AR 77.969 0.0048046 18230000 55216 53551 56102 4270.2 76442 38232 48654 44569 43362 20409 TRUE FALSE FALSE 51345.64354 49307.42373 77826.19686 9941.241404 66853.93157 33515.32455 36480.25459 34421.61163 47120.65307 15298.45356 3.356263647 3.2230332 5.087193719 0.64982002 4.369979705 2.190765519 2.384571385 2.250005956 3.080092566 1 13.90109821 -7.648327289 0.133482108 1.16E-13 4.725550084 0.25654511 1.122757961 8.78097155 1.12567986 18.53316886 16.46788335 2.25E-08 7.648327289 4.725550084 KATLELTHNWGTEDDETQSYHNGNSDPR ddPTM_HeLa_A486_30min_R1 1 KATLELTHNWGTEDDETQSYHNGNSDPR 28 1 Q04760 Q04760 GLO1 Lactoylglutathione lyase 0 0 76.198 0.0017358 7824500 13614 15358 15617 3170.4 24306 13553 16763 15846 16407 8035.6 FALSE FALSE TRUE 12659.7289 14140.97615 21664.32064 7380.851423 21257.31484 11880.96866 12568.7201 12238.21172 17829.17197 6023.433457 2.101746287 2.347660391 3.596673026 1.225356182 3.529102627 1.972457858 2.086637163 2.031766733 2.95996828 1 12.55637037 -10.92884129 2.571070468 0.06710863 2.421875285 0.272356465 0.700131414 17659977.53 9650679.405 99003505.55 0.167426677 1.18E-11 10.92884129 2.354766655 KATSCFPRPMT(ph)PR ddPTM_HeLa_A485_30min_R1 1 KATSCFPRPMTPR 13 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KATSCFPRPMT(1)PR 88.427 0.0085747 2617300000 2687900 3597800 3327300 2712200 4128800 3976400 4345700 5138800 3340700 3668600 TRUE FALSE FALSE 3285814.082 4018531.413 4558206.731 2860360.618 3717722.175 4184598.155 3417205.694 3878501.243 4011147.847 2754085.536 1.193069002 1.459116415 1.655070865 1.038588156 1.349893504 1.519414739 1.240776893 1.40827189 1.456435465 1 21.39314194 -10.02157552 4.398292059 0.999982853 1.371560095 0.305214225 0.166961108 23409975.31 17779995.72 3640.435824 0.039936655 9.52E-11 10.02157552 0.371577242 KATSCFPRPMT(ph)PR ddPTM_HeLa_A486_30min_R1 1 KATSCFPRPMTPR 13 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KATSCFPRPMT(1)PR 87.429 0.0017958 2597200000 630630 638340 493790 218290 741440 591180 670700 741010 541770 713480 TRUE FALSE FALSE 586426.0936 587755.6136 684998.7122 508190.1518 648441.6815 518246.2223 502883.7661 572298.1991 588731.0598 534819.964 1.096492527 1.098978447 1.280802435 0.950207894 1.212448534 0.969010615 0.940286077 1.070076358 1.100802325 1 19.02869379 -6.275153052 24.98949569 1.015680535 1.12482102 0.27478101 0.090709309 1136.964951 2071808.182 0.031522354 0.027956893 5.31E-07 6.275153052 0.109140485 KAVIFCLSADKK ddPTM_HeLa_A485_30min_R1 1 KAVIFCLSADKK 12 2 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 0 98.942 0.0037162 19948000 56917 43956 37990 79209 70456 67398 90248 100040 41918 105020 FALSE FALSE TRUE 69577.99029 49096.27183 52044.0819 83535.9871 63441.15325 70926.85506 70965.77754 75505.03314 50330.55811 78840.44675 0.882516439 0.622729498 0.660119064 1.059557506 0.804677749 0.89962523 0.900118917 0.957694131 0.638384994 1 16.26664833 -5.2333764 24.99462667 0.889262177 0.711882431 0.284459481 0.124903615 895.6808804 797747.739 0.032356032 0.056027778 5.84E-06 5.2333764 -0.177379746 KAVIFCLSADKK ddPTM_HeLa_A486_30min_R1 1 KAVIFCLSADKK 12 2 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 0 0 141.32 0.0002076 19085000 35945 34348 23181 20162 36133 43296 58992 45080 32823 55153 FALSE FALSE TRUE 33425.44112 31626.13939 32157.30401 46938.15493 31600.86221 37954.57972 44231.57765 34816.26809 35668.12407 41342.32981 0.808504051 0.76498203 0.777829991 1.135353405 0.764370619 0.91805614 1.069885946 0.842145768 0.862750702 1 15.33533207 KAVLFCLSEDK(ac)K ddPTM_HeLa_A485_30min_R1 1 KAVLFCLSEDKK 12 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 1 KAVLFCLSEDK(1)K 131.66 0.0025329 16212000 47390 40149 45124 64777 58372 48832 92709 75639 40820 117620 FALSE TRUE FALSE 57931.74201 44844.0763 61817.24537 68315.60349 52560.27872 51388.76801 72900.96479 57088.41665 49012.19958 88299.49864 0.656082344 0.507863317 0.700086029 0.773680537 0.595250024 0.581982557 0.825610178 0.646531606 0.5550677 1 16.43011763 -11.19942581 2.436205217 2.066195843 0.651690209 0.564067648 0.092511941 3489868.257 707067.1928 20678757.93 0.024020884 6.32E-12 11.19942581 -1.414505634 KAVLFCLSEDK(ac)K ddPTM_HeLa_A486_30min_R1 1 KAVLFCLSEDKK 12 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 1 KAVLFCLSEDK(1)K 96.591 0.032415 15625000 30199 37356 27447 16385 35566 36525 45702 46043 32525 58011 FALSE TRUE FALSE 28082.20605 34395.77451 38075.21346 38145.10805 31104.98064 32018.91686 34266.87621 35560.01401 35344.29319 43484.66801 0.645795572 0.790986251 0.875600877 0.877208216 0.715309144 0.73632658 0.788022027 0.817759814 0.812798966 1 15.4082192 -8.614738967 1.003384063 1.000685924 0.781383077 0.498436424 0.06606847 2.3904958 3.110971641 0.070983132 0.021781686 2.43E-09 8.614738967 -0.219302847 KAVLFCLSEDKK ddPTM_HeLa_A485_30min_R1 2 KAVLFCLSEDKK 12 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ; ; 155.98 1.04E-05 55262000 69097 56551 38189 99122 81350 85605 127724 127649 59499 142099 FALSE FALSE TRUE 84467.38927 63164.14752 52316.70028 104536.7839 73250.50836 90087.14543 100434.724 96342.8826 71439.90354 106676.3344 0.791810008 0.592110217 0.490424615 0.979943531 0.68666128 0.844490448 0.941490205 0.903132669 0.669688398 1 16.70288063 -5.261938413 24.9999515 0.852166424 0.621514475 0.426444991 0.125122708 43.4687212 2177684.098 0.034178669 0.054405195 5.47E-06 5.261938413 -0.230651949 KAVLFCLSEDKK ddPTM_HeLa_A486_30min_R1 3 KAVLFCLSEDKK 12 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ;; ;; 164.81 2.00E-07 358503000 829684 775122 538260 393850 987984 871725 1031030 990536 629028 1130594 FALSE FALSE TRUE 771527.4361 713698.5098 746688.6871 916902.7041 864061.8341 764180.4326 773055.3889 765012.576 683552.6535 847485.9035 0.910371999 0.842136143 0.881063253 1.081909092 1.019558946 0.901702824 0.912174923 0.902684721 0.806565219 1 19.69282985 -9.843697191 13.73279531 1.000004302 0.921050919 0.094694771 0.07577414 0 0 0.080085757 0.019423649 1.43E-10 9.843697191 -0.078953383 KAVPMAPAPAS(ph)PGSSNDSSAR ddPTM_HeLa_A485_30min_R1 4 KAVPMAPAPASPGSSNDSSAR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 KAVPMAPAPAS(0.906)PGS(0.069)S(0.024)NDSSAR;KAVPMAPAPAS(0.999)PGS(0.001)SNDSSAR;KAVPMAPAPAS(0.934)PGS(0.056)S(0.01)NDSSAR;KAVPMAPAPAS(0.999)PGS(0.001)SNDSSAR ;;; 179.2 2.84E-19 3146410000 1406410 2239930 1889950 1378170 2434200 2427670 2694830 3457920 1870720 1901970 TRUE FALSE FALSE 1719261.052 2501870.329 2589121.152 1453455.937 2191842.501 2554779.047 2119057.556 2609859.698 2246156.345 1427843.882 1.204095962 1.752201596 1.813308293 1.017937574 1.535071536 1.78925657 1.484096113 1.827832672 1.573110599 1 20.44540682 -5.997094636 24.99766522 1.592174739 1.467571898 0.000486525 0.304832671 385.2906479 3314974.094 0.093276849 0.105213848 1.01E-06 5.997094636 -0.124602841 KAVPMAPAPAS(ph)PGSSNDSSAR ddPTM_HeLa_A486_30min_R1 3 KAVPMAPAPASPGSSNDSSAR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 KAVPMAPAPAS(0.994)PGS(0.002)S(0.003)NDSSAR;KAVPMAPAPAS(1)PGSSNDSSAR;KAVPMAPAPAS(0.999)PGS(0.001)SNDSSAR ;; 220.98 8.73E-36 2200480000 1682790 1445310 1267830 572910 2071020 1335600 1675750 1838600 1120390 1728460 TRUE FALSE FALSE 1564835.111 1330778.372 1758767.73 1333763.433 1811253.36 1170827.251 1256459.626 1419990.916 1217506.307 1295642.366 1.207767786 1.027118599 1.357448457 1.029422523 1.397957807 0.903665458 0.969758059 1.09597444 0.93969319 1 20.30523612 -6.28501931 24.99891086 0.987062869 1.192951983 0.458030203 0.120447581 759.3832284 805078.2294 0.039987429 0.035285197 5.19E-07 6.28501931 0.205889114 KAVPVES(ph)PVQKV ddPTM_HeLa_A486_30min_R1 1 KAVPVESPVQKV 12 2 Q8TB61-5;Q8TB61-4;Q8TB61-3;Q8TB61-2;Q8TB61 Q8TB61-5 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 1 0 KAVPVES(1)PVQKV 58.671 0.023433 116530000 261210 236720 174080 112340 265410 259340 270440 270400 216450 372250 TRUE FALSE FALSE 242900.5279 217961.4451 241488.438 261533.1973 232119.803 227345.2676 202773.0516 208835.8228 235212.0603 279036.1771 0.870498336 0.781122532 0.865437738 0.937273439 0.831862755 0.814751944 0.726690903 0.748418449 0.842944677 1 18.09009265 -5.997369144 24.99055624 0.806674547 0.861168284 0.01865937 0.078007211 207.789998 1973762.318 0.024000851 0.027058753 1.01E-06 5.997369144 0.054493738 KAVS(ph)PLLLTTTNSSEGLSMGNYIGLINR ddPTM_HeLa_A485_30min_R1 3 KAVSPLLLTTTNSSEGLSMGNYIGLINR 28 1 P19525;P19525-2;C9JZT2 P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 KAVS(0.999)PLLLTTTNSSEGLSMGNYIGLINR;KAVS(0.998)PLLLT(0.001)T(0.001)TNSSEGLSMGNYIGLINR;KAVS(0.985)PLLLT(0.004)T(0.004)T(0.004)NS(0.001)SEGLSMGNYIGLINR ;; 327.6 1.20E-126 588707000 170060 197353 151641 178444 244938 240021 297180 373710 157403 255673 TRUE FALSE FALSE 207889.2603 220431.7166 207739.3162 188191.9439 220551.1127 252588.1284 233685.0653 282057.0365 188992.3383 191938.4264 1.083103911 1.14845016 1.082322702 0.98048081 1.149072215 1.3159852 1.217500162 1.469518334 0.984650869 1 17.55028404 -6.001898133 24.83434834 1.228613318 1.0777124 0.132262388 0.138593808 106.265563 1390367.03 0.041321286 0.046151053 9.96E-07 6.001898133 -0.150900918 KAVS(ph)PLLLTTTNSSEGLSMGNYIGLINR ddPTM_HeLa_A486_30min_R1 1 KAVSPLLLTTTNSSEGLSMGNYIGLINR 28 1 P19525;P19525-2;C9JZT2 P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 KAVS(0.953)PLLLT(0.037)T(0.008)T(0.002)NSSEGLSMGNYIGLINR 356.96 2.45E-146 470270000 166110 150500 130290 70686 223580 147630 236060 227690 124450 217570 TRUE FALSE FALSE 154466.5468 138573.8319 180741.7773 164560.5803 195536.5116 129416.9116 176995.2912 175849.9574 135237.4262 163089.0559 0.947130057 0.84968198 1.108239767 1.009022827 1.198955445 0.793535231 1.085267741 1.07824499 0.829224411 1 17.31530045 -4.74834618 24.99665755 1.016874917 0.898406014 0.129298449 0.118377602 445.8274026 851128.8318 0.029005141 0.075734342 1.79E-05 4.74834618 -0.118468903 KAVS(ph)PSSSEKR ddPTM_HeLa_A485_30min_R1 4 KAVSPSSSEKR 11 2 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 1 0 KAVS(0.391)PS(0.391)S(0.109)S(0.109)EKR;KAVS(0.387)PS(0.387)S(0.205)S(0.022)EKR;KAVS(0.529)PS(0.456)S(0.007)S(0.007)EKR;KAVS(0.47)PS(0.47)S(0.03)S(0.03)EKR ;;; 132.31 1.59E-05 1714460000 1869890 1683100 894890 2236190 1640780 1978230 2759470 3634020 1669660 2909120 TRUE FALSE FALSE 2285840.579 1879923.904 1225947.05 2358347.397 1477418.182 2081807.064 2169886.692 2742770.897 2004745.447 2183929.922 1.046663886 0.860798639 0.561349079 1.079864044 0.676495233 0.953238949 0.993569743 1.255887778 0.917953194 1 21.05849513 -6.677227913 2.86057539 1.068962653 0.842003486 0.232241193 0.165474471 0.349099598 5.779117977 0.069494662 0.049883132 2.10E-07 6.677227913 -0.226959167 KAVS(ph)PSSSEKR ddPTM_HeLa_A486_30min_R1 3 KAVSPSSSEKR 11 2 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 1 0 KAVS(0.437)PS(0.437)S(0.063)S(0.063)EKR;KAVS(0.399)PS(0.399)S(0.101)S(0.101)EKR;KAVS(0.497)PS(0.497)S(0.006)S(0.001)EKR ;; 132.86 1.49E-05 343920000 835580 478150 379013 379556 493970 965750 894960 742680 648020 1068830 TRUE FALSE FALSE 777010.1569 440259.6526 525776.9839 883625.5497 432011.6765 846605.584 671031.5421 573587.9766 704190.8954 801188.0111 0.969822496 0.549508538 0.656246694 1.102894124 0.539213856 1.056687784 0.837545661 0.715921817 0.878933391 1 19.61178131 KAVSPS(ph)SSEKR ddPTM_HeLa_A486_30min_R1 1 KAVSPSSSEKR 11 2 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F8WE42 NOL8 Nucleolar protein 8 1 0 KAVS(0.29)PS(0.675)S(0.026)S(0.008)EKR 135.91 9.79E-06 342710000 609830 329960 256840 258890 333210 671210 638920 481180 425620 735160 TRUE FALSE FALSE 567084.0662 303812.7679 356295.3264 602709.0036 291415.6947 588402.9346 479055.4582 371625.8181 462513.0843 551071.1509 1.0290578 0.551313142 0.646550497 1.093704511 0.528816822 1.067744036 0.869316888 0.674369938 0.839298308 1 19.07187908 KAVTK(ac)AQK ddPTM_HeLa_A485_30min_R1 2 KAVTKAQK 8 2 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; KAVTK(1)AQK;KAVTK(1)AQK 116.52 0.0043725 0 2859700 848960 519930 3200900 889210 10367400 2870400 5506200 5182100 8387700 FALSE TRUE FALSE 3495830.399 948238.487 712273.7431 3375757.062 800677.1302 10910221.03 2257115.591 4155795.817 6222099.937 6296800.754 0.555175642 0.150590518 0.113116767 0.536106698 0.12715618 1.732660991 0.358454345 0.659985281 0.988136703 1 22.58618759 KAVTK(ac)AQK ddPTM_HeLa_A486_30min_R1 2 KAVTKAQK 8 2 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; KAVTK(1)AQK;KAVTK(1)AQK 112.75 0.0053548 0 1431490 968840 3366100 1228040 788570 6288700 1507130 1694160 3320500 2709900 FALSE TRUE FALSE 1331149.943 892065.5899 4669544.067 2858939.182 689660.1975 5512864.133 1130030.133 1308436.751 3608323.614 2031323.402 0.655311676 0.439154883 2.298769395 1.407426892 0.339512752 2.713927348 0.556302425 0.644130201 1.776341281 1 20.95398851 KAVTK(ac)AQK(ac)K ddPTM_HeLa_A485_30min_R1 2 KAVTKAQKK 9 3 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; KAVTK(1)AQK(1)K;KAVTK(1)AQK(1)K 181.53 1.34E-13 0 1365690 1445820 1178090 1682810 2105970 2894800 4784500 6798900 3953300 5786800 FALSE TRUE FALSE 1669483.029 1614896.072 1613914.515 1774737.649 1896292.232 3046367.252 3762252.489 5131459.115 4746691.048 4344257.258 0.384296539 0.371731225 0.371505281 0.408524989 0.436505511 0.701240067 0.866028936 1.181205166 1.09263581 1 22.05067811 -6.646544322 1.408715668 1.106702509 0.378547056 0.968517897 0.055247811 0.06206846 0.251134696 0.030281195 0.019748026 2.26E-07 6.646544322 -0.728155454 down KAVTK(ac)AQK(ac)K ddPTM_HeLa_A486_30min_R1 2 KAVTKAQKK 9 3 P58876;P62807;O60814;P57053;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; KAVTK(1)AQK(1)K;KAVTK(1)AQK(1)K 176.65 1.70E-10 0 4441300 4731700 3097600 1815130 5147100 4631000 5825900 5695400 4015200 5728500 FALSE TRUE FALSE 4129987.805 4356742.859 4297073.677 4225714.372 4501502.723 4059674.305 4368198.2 4398681.75 4363240.769 4294046.314 0.961793959 1.014600808 1.000705014 0.984086818 1.048312569 0.94541931 1.017268534 1.024367561 1.016114045 1 22.03390632 -4.253744205 24.17324238 1.005399493 0.961793926 0.206636576 0.025777325 1014.003387 3185219.447 0.006189472 0.066187537 5.58E-05 4.253744205 -0.043605567 KAVTK(ac)VQK(ac)K ddPTM_HeLa_A485_30min_R1 2 KAVTKVQKK 9 3 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 2 ; K(0.055)AVTK(0.945)VQK(1)K;KAVTK(1)VQK(1)K 143.24 4.36E-05 0 47683 58603 47336 59187 81284 96848 136829 193316 114246 163629 FALSE TRUE FALSE 58289.91885 65456.11107 64847.55622 62420.23594 73191.07955 101918.8115 107594.3664 145904.9479 137174.1243 122839.3017 0.474521737 0.532859681 0.527905608 0.50814548 0.595827871 0.829692209 0.875895295 1.1877709 1.116695735 1 16.90641269 -6.58537365 1.229563963 1.112926676 0.507147553 0.940015411 0.063073126 0.09683452 0.298506679 0.036587406 0.024662686 2.60E-07 6.58537365 -0.605779123 KAVTK(ac)VQK(ac)K ddPTM_HeLa_A486_30min_R1 2 KAVTKVQKK 9 3 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 2 ; KAVTK(1)VQK(1)K;KAVTK(1)VQK(1)K 146.71 3.30E-05 0 293020 293010 199276 121289 344320 324830 383090 366930 269320 382090 FALSE TRUE FALSE 272480.8112 269790.8205 276441.004 282366.9216 301132.1749 284755.7772 287236.8301 283388.049 292664.8744 286412.177 0.951359031 0.941967005 0.965185932 0.985876105 1.051394456 0.994216727 1.002879253 0.989441343 1.021831116 1 18.12773331 -5.280881267 2.672871003 1.008646716 0.948764116 0.684139476 0.017320434 0.158701388 2.24803908 0.005120322 0.009068154 5.24E-06 5.280881267 -0.0598826 KAVVLPGGTATS(ph)PK ddPTM_HeLa_A485_30min_R1 2 KAVVLPGGTATSPK 14 1 Q8N1G0;F8WCX2;Q8N1G0-2;H0Y5I5 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 KAVVLPGGTAT(0.038)S(0.962)PK;KAVVLPGGTAT(0.131)S(0.868)PK ; 131.67 1.03E-05 709490000 1302110 1159640 822670 1921280 1433660 1456780 2210700 2160900 1027890 2655600 TRUE FALSE FALSE 1591759.877 1295249.81 1127009.867 2026234.661 1290919.777 1533054.748 1738365.885 1630935.887 1234178.095 1993607.793 0.798431809 0.649701418 0.565311728 1.016365741 0.64752946 0.76898513 0.871969849 0.81808262 0.619067652 1 20.92695018 -14 0.269851663 2.654100385 0.736070411 0.238601059 0.129705835 314.9008327 3.064404721 290.9512952 0.160171917 1.00E-14 14 -1.918029974 KAVVLPGGTATS(ph)PK ddPTM_HeLa_A486_30min_R1 2 KAVVLPGGTATSPK 14 1 Q8N1G0;F8WCX2;Q8N1G0-2;H0Y5I5 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 KAVVLPGGTAT(0.033)S(0.967)PK;KAVVLPGGTAT(0.02)S(0.98)PK ; 151.95 2.77E-08 848210000 1445190 1283970 595970 911700 1226000 1549210 2002940 1926840 1128420 2697800 TRUE FALSE FALSE 1343889.644 1182223.541 826745.5446 2122483.675 1072223.648 1358084.221 1501783.227 1488140.595 1226232.354 2022253.32 0.664550593 0.584607047 0.408823927 1.049563699 0.530212332 0.671569782 0.742628637 0.735882384 0.606369312 1 20.9475323 -14 0.206148252 2.535058929 0.619198292 0.284181372 0.158972682 189.8354545 1.887788584 120.5396688 0.350030258 1.00E-14 14 -1.915860637 KAWENS(ph)PNVR ddPTM_HeLa_A485_30min_R1 1 KAWENSPNVR 10 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 KAWENS(1)PNVR 86.467 0.002232 191200000 141730 161750 139270 100450 160950 159840 133230 179340 117570 135440 TRUE FALSE FALSE 173257.3495 180665.2555 190791.7685 105937.3291 144925.2529 168208.9752 104764.3221 135356.5838 141165.2206 101677.3006 1.70399242 1.776849448 1.876444078 1.041897538 1.425345205 1.654341473 1.03036097 1.331236992 1.388365149 1 16.63363811 -1 0.168892439 1.016969439 4.329325701 0.460238783 0.226594529 55.95074541 0.60196079 0.611294316 46.76304153 0.1 1 3.312356261 KAYGQALAK ddPTM_HeLa_A485_30min_R1 1 KAYGQALAK 9 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 101.65 0.0040315 468900000 280590 328700 262240 270010 378770 386630 424460 591370 301810 402160 FALSE FALSE TRUE 343006.2775 367138.6057 359253.4887 284759.9626 341058.3289 406873.349 333770.6535 446335.5803 362380.4986 301908.9132 1.136125045 1.216057525 1.189939989 0.943198263 1.129672938 1.347669218 1.105534282 1.478378281 1.20029745 1 18.20375382 -6.136486692 9.167833438 1.248568584 1.121127588 0.111902144 0.138870376 0.631615287 44.16523003 0.044703596 0.044729366 7.30E-07 6.136486692 -0.127440996 KAYGQALAK ddPTM_HeLa_A486_30min_R1 2 KAYGQALAK 9 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 113.62 0.00054417 0 680760 602850 461640 301019 1082130 666690 732220 727330 510420 798730 FALSE FALSE TRUE 633042.2394 555077.9705 640399.3711 700787.4447 946399.1649 584440.5662 549010.8114 561732.8365 554663.6166 598722.8091 1.057321067 0.927103431 1.06960911 1.170470598 1.580696694 0.976145484 0.916969928 0.938218534 0.926411368 1 19.19152871 -6.494347029 24.99956001 0.941152245 1.156981393 0.302474532 0.15949932 994.6336028 871501.9053 0.061597039 0.05421474 3.20E-07 6.494347029 0.215829148 KAYILVT(ph)PLK ddPTM_HeLa_A485_30min_R1 2 KAYILVTPLK 10 1 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 KAYILVT(1)PLK;KAYILVT(1)PLK ; 97.273 0.0005403 0 824180 878230 560890 939270 1100380 940750 1316210 1511990 737980 1361380 TRUE FALSE FALSE 1007515.998 980931.3589 768386.5516 990579.9417 990822.3035 990006.2153 1034990.981 1141172.082 886085.8168 1022013.02 0.985815227 0.959803192 0.751836362 0.969243955 0.969481096 0.968682586 1.01269843 1.116592508 0.867000517 1 19.96298215 -5.503447834 24.87284369 0.9927302 0.897770655 0.197801967 0.081004267 1110.125941 1421034.663 0.023032699 0.033588387 3.14E-06 5.503447834 -0.094959545 KAYILVT(ph)PLK ddPTM_HeLa_A486_30min_R1 1 KAYILVTPLK 10 1 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 KAYILVT(1)PLK 89.231 0.0010354 0 415230 390130 238470 183780 380080 411800 496130 480070 336890 558700 TRUE FALSE FALSE 386124.5212 359214.678 330811.9704 427849.1277 332406.8223 360996.3029 371993.0265 370768.5409 366091.8965 418797.8835 0.921982981 0.857728017 0.78990841 1.02161244 0.793716576 0.861982157 0.888239987 0.885316176 0.874149347 1 18.67589463 -10.13174105 0.697798772 1.030955614 0.875056894 0.261322177 0.061877477 71.18817053 16.41115298 4.556218261 0.021660113 7.38E-11 10.13174105 -0.15589872 KAYS(ph)FCGTVEYMAPEVVNR ddPTM_HeLa_A485_30min_R1 4 KAYSFCGTVEYMAPEVVNR 19 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32-2;Q9UK32 E9PGT3;B1AXG1 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 0 KAYS(1)FCGTVEYMAPEVVNR;KAYS(1)FCGTVEYMAPEVVNR;KAYS(0.999)FCGT(0.001)VEYMAPEVVNR;KAYS(1)FCGTVEYMAPEVVNR ;;; 278.02 9.54E-70 6160690000 2607870 2696400 2498770 2584910 3894570 2893100 4020890 4128010 2484990 3463030 TRUE FALSE FALSE 3187981.684 3011720.524 3423169.005 2726117.088 3506812.936 3044578.242 3161794.004 3115609.075 2983704.699 2599760.353 1.226259828 1.158460825 1.316724829 1.048603224 1.348898537 1.171099574 1.216186715 1.198421643 1.147684515 1 21.30994721 -8.229947119 1.504007841 1.000030306 1.212227786 0.401083373 0.078219965 0.791608737 3.229493716 0.068628488 0.020005116 5.89E-09 8.229947119 0.21219748 KAYS(ph)FCGTVEYMAPEVVNR ddPTM_HeLa_A486_30min_R1 4 KAYSFCGTVEYMAPEVVNR 19 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32-2;Q9UK32 E9PGT3;B1AXG1 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 0 KAYS(0.983)FCGT(0.017)VEYMAPEVVNR;KAYS(0.999)FCGT(0.001)VEYMAPEVVNR;KAYS(0.998)FCGT(0.002)VEYMAPEVVNR;KAYS(0.972)FCGT(0.028)VEYMAPEVVNR ;;; 247.73 3.03E-46 5909140000 2379620 2723030 2178120 1234570 3326980 2740200 3408920 3537310 2319010 3076710 TRUE FALSE FALSE 2212820.926 2507247.186 3021546.396 2874141.352 2909679.146 2402141.984 2555972.16 2731941.732 2520023.654 2306281.79 0.959475523 1.087138266 1.31013756 1.246222974 1.261632103 1.041564823 1.108265335 1.184565452 1.092678122 1 21.13713737 -6.272530956 24.79333 1.098378254 1.179851007 0.145956714 0.10280735 1578.692551 3528888.735 0.038957915 0.034690903 5.34E-07 6.272530956 0.081472753 KAYS(ph)FDR ddPTM_HeLa_A486_30min_R1 1 KAYSFDR 7 1 Q58EX7-2;Q58EX7 Q58EX7-2 PLEKHG4 Puratrophin-1 1 0 KAYS(1)FDR 70.056 0.0134 0 466550 488790 306340 191800 505220 555200 640360 684270 451660 687580 TRUE FALSE FALSE 433847.2543 450056.5003 424963.0521 446520.093 441850.5966 486705.0689 480135.155 528476.6585 490810.2525 515405.4926 0.841759082 0.873208584 0.824521776 0.866347176 0.857287326 0.944314866 0.931567789 1.025360936 0.952279825 1 18.97534839 -6.503501148 1.260526285 0.990086378 0.848043759 0.85022869 0.025321901 0.152012933 0.49272017 0.01307409 0.009522015 3.14E-07 6.503501148 -0.142042618 KCEDPDS(ph)PVTKK ddPTM_HeLa_A485_30min_R1 1 KCEDPDSPVTKK 12 2 Q9BUB4-2;Q9BUB4 Q9BUB4-2 ADAT1 tRNA-specific adenosine deaminase 1 1 0 KCEDPDS(0.999)PVT(0.001)KK 77.746 0.0033867 150600000 420650 267940 158440 607200 423150 422340 721370 721160 282040 799660 TRUE FALSE FALSE 514222.1413 299273.2522 217053.5492 640369.7985 381019.7002 444453.0693 567243.4064 544294.3793 338642.841 600319.4787 0.856580803 0.498523308 0.361563396 1.06671501 0.634694881 0.7403609 0.94490255 0.906674527 0.564104369 1 19.19537095 -5.256263062 24.99985074 0.824957898 0.564852599 0.292717332 0.187718749 562.940928 2718804.513 0.050663512 0.084463087 5.54E-06 5.256263062 -0.260105299 KCHS(ph)LGYNFIHK ddPTM_HeLa_A485_30min_R1 2 KCHSLGYNFIHK 12 1 Q86X27;Q86X27-3 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 KCHS(1)LGYNFIHK;KCHS(1)LGYNFIHK ; 121.32 7.94E-05 2307980000 1570120 1419220 924110 1634230 1709970 1711080 2357600 2683300 1290650 2170250 TRUE FALSE FALSE 1919387.777 1585185.433 1265976.744 1723503.847 1539719.383 1800669.503 1853879.5 2025216.468 1549671.616 1629246.615 1.178083022 0.9729561 0.777031993 1.057853262 0.945049919 1.105216046 1.137875312 1.243038622 0.951158408 1 20.63577357 -6.271446211 23.14972336 1.105798719 0.977820238 0.141760199 0.119538687 418.5397673 968241.7625 0.041935184 0.037488321 5.35E-07 6.271446211 -0.127978481 KCHS(ph)LGYNFIHK ddPTM_HeLa_A486_30min_R1 2 KCHSLGYNFIHK 12 1 Q86X27;Q86X27-3 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 KCHS(1)LGYNFIHK;KCHS(0.999)LGY(0.001)NFIHK ; 113.11 0.00028111 1588330000 1781840 1629630 1117680 815360 1825970 1858510 2219980 2283190 1213000 2031040 TRUE FALSE FALSE 1656942.217 1500492.184 1550475.629 1898199.286 1596939.816 1629225.932 1664517.523 1763357.479 1318143.817 1522454.364 1.088336213 0.98557449 1.018405323 1.246802092 1.048924588 1.070131211 1.093311933 1.15823339 0.865801858 1 20.53796755 -7.762508898 24.99999961 0.93290092 1.086410246 0.4075652 0.075101777 28.74864545 671846.9318 0.060971253 0.019191002 1.73E-08 7.762508898 0.153509326 KCQEQAVS(ph)PK ddPTM_HeLa_A486_30min_R1 1 KCQEQAVSPK 10 1 Q5T7V8-3;Q5T7V8-4;Q5T7V8 Q5T7V8-3 GORAB RAB6-interacting golgin 1 0 KCQEQAVS(1)PK 86.944 0.0021885 71683000 106160 93922 49316 80279 92721 126270 145640 143760 81255 205950 TRUE FALSE FALSE 98718.73221 86479.27866 68412.47593 186893.5691 81091.06759 110692.0912 109199.3316 111028.9863 88298.24882 154378.7795 0.639457913 0.560175945 0.443146889 1.210616962 0.525273408 0.717016235 0.707346774 0.719198498 0.571958459 1 17.23611493 -11.43921172 2.213913425 3.991111861 0.681333768 0.192452007 0.198244285 9115041.687 733873.7853 137011502.2 0.049375892 3.64E-12 11.43921172 -3.309778094 KCS(ph)LPAEEDSVLEK ddPTM_HeLa_A485_30min_R1 7 KCSLPAEEDSVLEK 14 1 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK;KCS(0.842)LPAEEDS(0.158)VLEK;KCS(0.99)LPAEEDS(0.01)VLEK;KCS(0.991)LPAEEDS(0.009)VLEK;KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK ;;;;;; 236.27 9.74E-35 17067400000 15985772 11657878 7643548 23149179 18149277 14617571 24790834 24772563 13541583 29856705 TRUE FALSE FALSE 19541751.83 13021165.42 10471214.48 24413760.03 16342271.26 15382924.41 19494069.79 18697053.08 16259254.5 22413977.92 0.871855585 0.580939513 0.467173409 1.089220313 0.729110706 0.68630943 0.86972825 0.834169336 0.725406912 1 24.41789538 -14 0.102079052 1.765246838 0.601783889 0.170622041 0.161629208 324.547849 2.239772365 52.68436387 2.617743313 1.00E-14 14 -1.163462949 KCS(ph)LPAEEDSVLEK ddPTM_HeLa_A486_30min_R1 7 KCSLPAEEDSVLEK 14 1 E7EVA0;P27816;P27816-6 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KCS(1)LPAEEDSVLEK;KCS(0.999)LPAEEDS(0.001)VLEK;KCS(0.999)LPAEEDS(0.001)VLEK;KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK ;;;;;; 235.56 2.23E-35 17421810000 12326650 11635970 5364866 6540223 10556880 13671850 18848600 17059640 9488110 16519490 TRUE FALSE FALSE 11462615.49 10713893.36 7442285.791 15225969.67 9232737.671 11985156.15 14132480.92 13175532.38 10310547.01 12382902.18 0.925680856 0.865216668 0.601013049 1.229596216 0.745603699 0.967879418 1.141289878 1.064010051 0.832643823 1 23.56184614 -5.255485337 24.99963482 0.994243845 0.804094861 0.266752179 0.15175856 706.3048577 2965601.219 0.041249688 0.069123128 5.55E-06 5.255485337 -0.190148984 KCS(ph)QTQCPR ddPTM_HeLa_A485_30min_R1 3 KCSQTQCPR 9 1 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 KCS(0.996)QT(0.004)QCPR;KCS(0.992)QT(0.008)QCPR;KCS(0.958)QT(0.042)QCPR ;; 101.89 0.00095199 214669000 383462 388149 223554 415978 277595 342993 384645 393892 289241 466773 TRUE FALSE FALSE 468761.799 433539.6491 306255.9275 438701.8248 249956.6671 360951.5831 302462.4535 297289.3694 347289.0156 350415.0814 1.337732945 1.237217438 0.873980441 1.25194904 0.713315951 1.030068631 0.863154783 0.84839205 0.991078963 1 18.41870534 -4.107735053 0.786200253 0.917718358 1.71707345 0.474012939 0.13996008 2.562972334 1.038077423 0.050385859 1.898242368 7.80E-05 4.107735053 0.799355092 KCS(ph)QTQCPR ddPTM_HeLa_A486_30min_R1 1 KCSQTQCPR 9 1 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 KCS(0.971)QT(0.029)QCPR 59.57 0.019149 30359000 53065 20068 28979 16479 21791 53073 33569 30691 48739 58214 TRUE FALSE FALSE 49345.41753 18477.73859 40200.44488 38363.9448 19057.76959 46525.39287 25169.68114 23703.32928 52963.73576 43636.83549 1.130820257 0.423443597 0.921250233 0.879164228 0.43673583 1.066195391 0.576798956 0.543195422 1.213739153 1 15.41325886 -7.770297516 24.96846649 1.106869693 0.741213327 0.258911126 0.243232485 266.2736198 750517.9644 0.207650921 0.056846712 1.70E-08 7.770297516 -0.365656366 KCSPGS(ph)PTDPNATLSKDEAAVHQDGKPR ddPTM_HeLa_A485_30min_R1 1 KCSPGSPTDPNATLSKDEAAVHQDGKPR 28 3 Q9P0K8-2;Q9P0K8 Q9P0K8-2 FOXJ2 Forkhead box protein J2 1 0 KCS(0.248)PGS(0.733)PT(0.019)DPNATLSKDEAAVHQDGKPR 161.61 9.14E-14 404790000 466080 376460 203140 555930 575570 582350 920220 1071900 396380 799950 TRUE FALSE FALSE 569757.888 420483.7222 278289.9394 586299.0482 518264.2299 612840.9455 723607.4795 809014.8443 475929.8302 600537.187 0.948747056 0.700179325 0.463401677 0.976290996 0.863001062 1.020487921 1.204933675 1.347151953 0.792506843 1 19.19589406 -5.948915417 1.469330883 1.108043647 0.722426112 0.381056033 0.186021873 0.384309109 1.710904824 0.075290348 0.087890244 1.12E-06 5.948915417 -0.385617535 KCSPGS(ph)PTDPNATLSKDEAAVHQDGKPR ddPTM_HeLa_A486_30min_R1 2 KCSPGSPTDPNATLSKDEAAVHQDGKPR 28 3 Q9P0K8-2;Q9P0K8 Q9P0K8-2 FOXJ2 Forkhead box protein J2 1 0 KCS(0.017)PGS(0.888)PT(0.095)DPNATLSKDEAAVHQDGKPR;KCS(0.02)PGS(0.908)PT(0.071)DPNATLSKDEAAVHQDGKPR ; 168.01 5.66E-14 1239420000 1391650 1217840 561550 627990 1333850 1441220 1982150 1964700 896370 1845260 TRUE FALSE FALSE 1294102.521 1121333.923 778997.1988 1461992.457 1166546.095 1263416.93 1486195.105 1517380.699 974068.0733 1383194.885 0.935589435 0.810683972 0.563186871 1.056967801 0.843370741 0.913404859 1.074465443 1.097011502 0.704216075 1 20.39957301 -5.285950598 24.97722999 0.958190072 0.773906397 0.269889917 0.139958997 1001.410763 1020447.447 0.039520602 0.058648098 5.18E-06 5.285950598 -0.184283674 KCSPGSPT(ph)DPNATLSKDEAAVHQDGKPR ddPTM_HeLa_A485_30min_R1 1 KCSPGSPTDPNATLSKDEAAVHQDGKPR 28 3 Q9P0K8-2;Q9P0K8 Q9P0K8-2 FOXJ2 Forkhead box protein J2 1 0 KCS(0.022)PGS(0.227)PT(0.75)DPNATLSKDEAAVHQDGKPR 75.897 0.002399 279040000 291260 227720 136680 393010 424840 373600 584070 667970 271230 506490 TRUE FALSE FALSE 356049.7822 254349.8731 187243.6197 414479.1411 382541.4379 393161.1183 459278.6731 504149.3102 325663.3731 380231.3643 0.936402979 0.668934488 0.49244654 1.090070889 1.006075442 1.034004965 1.207892658 1.325901431 0.856487401 1 18.53651802 -5.281782368 24.3783149 1.088965579 0.696228669 0.548350296 0.155592976 409.0681448 490211.7952 0.044550445 0.066178548 5.23E-06 5.281782368 -0.392736911 KDAPT(ph)SPASVASSSSTPSSK ddPTM_HeLa_A485_30min_R1 1 KDAPTSPASVASSSSTPSSK 20 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 KDAPT(0.499)S(0.499)PAS(0.001)VASSSSTPSSK 83.362 0.0012518 141120000 54794 49734 31760 64824 66376 65713 87682 94812 46921 90849 TRUE FALSE FALSE 66982.73626 55549.95867 43509.34564 68365.17098 59767.37238 69153.63107 68948.0244 71559.20834 56337.61432 68202.01625 0.982122523 0.814491444 0.637948085 1.002392227 0.876328526 1.013952884 1.010938213 1.049224235 0.826040305 1 16.05752677 -5.311619059 24.9986531 0.970294749 0.811817159 0.339353737 0.100290085 394.1532431 196359.4904 0.028306755 0.041985762 4.88E-06 5.311619059 -0.158477591 KDDDS(ph)DDESQSSHTGK ddPTM_HeLa_A485_30min_R1 11 KDDDSDDESQSSHTGK 16 1 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 KDDDS(0.999)DDES(0.001)QSSHTGK;KDDDS(0.998)DDES(0.002)QSSHTGK;KDDDS(0.999)DDES(0.001)QSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(0.947)DDES(0.053)QSSHTGK;KDDDS(0.999)DDESQSSHTGK;KDDDS(0.659)DDES(0.341)QSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(1)DDESQSSHTGK ;;;;;;;;;; 320.34 8.96E-79 8713249000 4030732 3213025 1341012.6 6853882 2897702 3703370 5810971 7222729 3239120 9748853 TRUE FALSE FALSE 4927354.428 3588760.324 1837108.965 7228292.219 2609196.614 3897272.727 4569409.575 5451343.388 3889181.673 7318643.361 0.673260628 0.490358684 0.251017692 0.98765466 0.356513699 0.532512999 0.624351994 0.744857089 0.531407459 1 22.80314481 -14 0.212395167 3.093518949 0.515748794 0.306960344 0.192715748 178.6762215 1.783452794 159.0417741 0.391457197 1.00E-14 14 -2.577770155 KDDDS(ph)DDESQSSHTGK ddPTM_HeLa_A486_30min_R1 6 KDDDSDDESQSSHTGK 16 1 O94874-3;O94874-2;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 0 KDDDS(1)DDESQSSHTGK;KDDDS(1)DDESQSSHTGK;KDDDS(0.936)DDES(0.064)QSSHTGK;KDDDS(0.998)DDES(0.002)QSSHTGK;KDDDS(0.888)DDES(0.112)QSSHTGK;KDDDS(0.992)DDES(0.008)QSSHTGK ;;;;; 320.6 8.59E-79 6891632000 3171344 1048206 1061553 435652 1095104 4936900 3409815 2484778 3066111 4002724 TRUE FALSE FALSE 2949049.162 965142.3391 1472614.751 1014219.873 957745.8449 4327835.473 2556643.222 1919048.292 3331883.97 3000415.857 0.982880142 0.321669524 0.490803549 0.338026434 0.319204367 1.442411879 0.85209629 0.639594104 1.110474057 1 21.51673104 -6.236258443 24.99956213 0.976588792 0.472680619 0.490911111 0.262612181 695.7118043 690701.1446 0.086783238 0.086750659 5.80E-07 6.236258443 -0.503908173 KDDEDEEEEEEVS(ph)DS ddPTM_HeLa_A485_30min_R1 1 KDDEDEEEEEEVSDS 15 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 KDDEDEEEEEEVS(0.979)DS(0.021) 148.7 1.67E-07 298320000 498150 377420 219830 666800 345920 362350 550760 421150 307290 905980 TRUE FALSE FALSE 608961.7489 421555.9859 301154.2649 703225.5956 311478.9902 381322.0857 433085.6267 317862.3022 368960.2844 680135.8593 0.895353098 0.619811439 0.442785453 1.033948712 0.45796584 0.560655758 0.636763407 0.467351188 0.54248027 1 19.37546343 -10.22261741 4.896697795 1.000058809 0.623253744 0.268524823 0.183722655 0.000115548 1.83E-05 0.174261266 0.042257988 5.99E-11 10.22261741 -0.376805065 KDDEDEEEEEEVS(ph)DS ddPTM_HeLa_A486_30min_R1 1 KDDEDEEEEEEVSDS 15 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 KDDEDEEEEEEVS(0.926)DS(0.074) 191.06 9.56E-18 226290000 615860 555770 235200 289570 354820 592700 675740 595430 435960 984440 TRUE FALSE FALSE 572691.3943 511728.7611 326275.7389 674133.5941 310315.167 519578.7001 506662.7048 459863.5871 473749.3638 737929.8164 0.776078404 0.693465354 0.442150096 0.913547033 0.420521248 0.704103139 0.686600126 0.623180656 0.641997861 1 19.49312408 -10.70745047 2.557892995 1.061960484 0.65260292 0.361860756 0.137093501 20157744.28 15853069.37 8023980.638 0.032763808 1.96E-11 10.70745047 -0.409357564 KDDS(ph)DDDGGGWITPSNIK ddPTM_HeLa_A485_30min_R1 4 KDDSDDDGGGWITPSNIK 18 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK ;;; 247.13 6.56E-46 9116300000 3267720 2020123 1224679 6420820 2595420 2402300 4182990 3011480 1980231 8098440 TRUE FALSE FALSE 3994613.04 2256358.812 1677738.725 6771573.138 2337010.872 2528080.713 3289260.015 2272909.808 2377645.198 6079647.949 0.657046769 0.371133137 0.275959848 1.113810075 0.384399046 0.415826827 0.54102804 0.373855497 0.39108271 1 22.53555635 -10.68628624 2.709587696 1.070403725 0.501424655 0.300512256 0.227614599 138997910.1 120448533.3 67194124.33 0.056158148 2.06E-11 10.68628624 -0.568979071 KDDS(ph)DDDGGGWITPSNIK ddPTM_HeLa_A486_30min_R1 5 KDDSDDDGGGWITPSNIK 18 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK ;;;; 266.5 1.88E-58 10157370000 5799770 4926720 1629050 3358280 3292730 6491350 8130090 6714720 4057380 10266020 TRUE FALSE FALSE 5393236.073 4536308.764 2259861.787 7818245.558 2879725.1 5690513.236 6095855.491 5185924.837 4409076.965 7695341.771 0.700844255 0.589487628 0.293666202 1.015971193 0.374216661 0.739475049 0.792148766 0.673904421 0.572954015 1 22.87555397 -14 0.200541741 2.624484317 0.582410971 0.236282163 0.194245428 204.1862797 2.021139683 133.0800581 0.448457255 1.00E-14 14 -2.042073346 KDDS(ph)HS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 3 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 KDDS(1)HS(1)AEDS(1)EDEKEDHK;KDDS(1)HS(1)AEDS(1)EDEKEDHK;KDDS(1)HS(1)AEDS(1)EDEKEDHK ;; 131.32 7.72E-06 4355200000 3168320 1710650 982385 12659140 2776160 1354430 4553000 2253270 1249840 14514000 TRUE FALSE FALSE 3873101.853 1910695.637 1345810.092 13350676.76 2499755.763 1425345.86 3580214.355 1700652 1500671.424 10895926.91 0.355463274 0.175358705 0.123514971 1.225290595 0.229421121 0.130814558 0.328582817 0.156081443 0.137727743 1 23.3772856 -10.44421133 4.188334098 1.003185702 0.322230291 0.298222395 0.313786853 904590526.1 113320.7275 27794281.02 0.07825498 3.60E-11 10.44421133 -0.680955411 KDDS(ph)HS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 3 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 KDDS(1)HS(1)AEDS(1)EDEKEDHK;KDDS(1)HS(1)AEDS(1)EDEKEDHK;KDDS(1)HS(1)AEDS(1)EDEKEDHK ;; 144.26 2.39E-08 3483940000 1543270 1739740 418817 4284480 1102910 3278740 4932260 3935370 1418910 7854500 TRUE FALSE FALSE 1435094.742 1601876.666 580994.1587 9974485.966 964572.7436 2874242.395 3698156.38 3039372.16 1541902.261 5887682.076 0.243745284 0.272072548 0.098679608 1.694127814 0.163828945 0.48817894 0.62811754 0.516225591 0.261886128 1 22.48926834 -11.49319922 2.065232238 6.230746414 0.498877015 0.111308203 0.434839682 30613841.14 1841241.343 750595837 0.110127646 3.21E-12 11.49319922 -5.7318694 KDDS(ph)HS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 6 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR ;;;;; 116.94 3.03E-05 7766360000 1007165 597675 353069 3997120 1124043 774558 2295180 1779300 594126 5133100 TRUE FALSE FALSE 1231205.38 667567.8922 483683.9155 4215472.544 1012129.332 815112.6592 1804796.043 1342923.885 713361.6386 3853512.638 0.3195021 0.173236202 0.125517667 1.093929861 0.2626511 0.211524584 0.468350882 0.348493443 0.185119839 1 21.87774269 -10.31370187 3.525374746 1.002427052 0.360255317 0.347468524 0.265360117 474278528 740753527.2 12225964.79 0.067845954 4.86E-11 10.31370187 -0.642171736 KDDS(ph)HS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A486_30min_R1 7 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR;KDDS(1)HS(1)AEDS(1)EDEKEDHKNVR ;;;;;; 131.97 9.11E-07 5155530000 1805150 1707230 468468 4609200 1383600 2983610 5519910 4692460 1319160 8572160 TRUE FALSE FALSE 1678618.307 1571942.877 649871.3556 10730450.54 1210055.986 2615522.533 4138770.134 3624089.294 1433505.851 6425635.341 0.261237717 0.244636179 0.101137292 1.669943899 0.18831694 0.407044968 0.644102865 0.564004818 0.223091691 1 22.61540768 -11.46632625 2.142385389 6.069957057 0.492051078 0.11597722 0.430679795 22998894.83 1496227.06 567197051.9 0.107468437 3.42E-12 11.46632625 -5.57790598 KDDS(ph)HSAEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 2 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 KDDS(0.5)HS(0.5)AEDS(1)EDEKEDHK;KDDS(0.5)HS(0.5)AEDS(1)EDEKEDHK ; 208.17 1.10E-25 1953590000 1173680 466760 313615 3371420 818120 612220 1521740 766270 468460 4110890 TRUE FALSE FALSE 1434761.067 521343.5217 429634.2391 3555592.138 736665.1002 644274.8925 1196607.818 578341.081 562475.625 3086120.778 0.46490762 0.168931665 0.139214979 1.152123456 0.238702615 0.208765288 0.387738492 0.187400663 0.182259758 1 21.55736309 -10.74612083 3.421439865 1.088064809 0.349206199 0.317712086 0.286728048 192151002.2 313148611.2 146259174.7 0.072969545 1.79E-11 10.74612083 -0.73885861 KDDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 4 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 KDDS(0.165)HS(0.835)AEDS(1)EDEKEDHK;KDDS(0.084)HS(0.916)AEDS(1)EDEKEDHK;KDDS(0.085)HS(0.915)AEDS(1)EDEKEDHK;KDDS(0.02)HS(0.98)AEDS(1)EDEKEDHK ;;; 182.02 6.35E-18 9660238000 1461663 726548 520138 4604990 1167071 920464 1990229 1009618 758678 5515030 TRUE FALSE FALSE 1786804.892 811511.4685 712558.6909 4856548.943 1050873.313 968658.0717 1565000.315 762007.6025 910937.7156 4140234.518 0.431570937 0.19600616 0.172105877 1.173013007 0.253819756 0.233962126 0.377997988 0.184049382 0.220020801 1 21.98128106 -10.7368291 3.475629391 1.077606781 0.362311541 0.313517886 0.283968935 108887650.1 94494227.02 63187494.13 0.070379523 1.83E-11 10.7368291 -0.71529524 KDDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 7 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 KDDS(0.058)HS(0.942)AEDS(1)EDEKEDHK;KDDS(0.065)HS(0.935)AEDS(1)EDEKEDHK;KDDS(0.006)HS(0.994)AEDS(1)EDEKEDHK;KDDS(0.027)HS(0.973)AEDS(1)EDEKEDHK;KDDS(0.008)HS(0.992)AEDS(1)EDEKEDHK;KDDS(0.003)HS(0.997)AEDS(1)EDEKEDHK;KDDS(0.427)HS(0.573)AEDS(1)EDEKEDHK ;;;;;; 185.18 5.01E-18 14963070000 4481580 3960242 1154924 7535032 2685130 8334270 11545610 9068800 3750263 16981150 TRUE FALSE FALSE 4167444.385 3646418.001 1602141.503 17541935.3 2348335.958 7306072.504 8656776.261 7004032.211 4075338.816 12728959.51 0.327398668 0.286466305 0.125865865 1.378112271 0.18448766 0.573972484 0.680085144 0.550243891 0.320162761 1 23.60161116 -14 0.115615534 2.37756622 0.273622527 0.159680709 0.341833735 325.9837939 2.467168474 109.550799 3.722566984 1.00E-14 14 -2.103943694 KDDSHS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 13 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 KDDS(0.167)HS(0.833)AEDS(1)EDEKEDHKNVR;KDDS(0.104)HS(0.896)AEDS(1)EDEKEDHKNVR;KDDS(0.122)HS(0.878)AEDS(1)EDEKEDHKNVR;KDDS(0.25)HS(0.75)AEDS(1)EDEKEDHKNVR;KDDS(0.095)HS(0.905)AEDS(1)EDEKEDHKNVR;KDDS(0.003)HS(0.997)AEDS(1)EDEKEDHKNVR;KDDS(0.309)HS(0.691)AEDS(1)EDEKEDHKNVR;KDDS(0.118)HS(0.882)AEDS(1)EDEKEDHKNVR;KDDS(0.117)HS(0.883)AEDS(1)EDEKEDHKNVR;KDDS(0.422)HS(0.578)AEDS(1)EDEKEDHKNVR;KDDS(0.018)HS(0.982)AEDS(1)EDEKEDHKNVR;KDDS(0.179)HS(0.821)AEDS(1)EDEKEDHKNVR;KDDS(0.062)HS(0.938)AEDS(1)EDEKEDHKNVR ;;;;;;;;;;;; 179.86 2.22E-19 79393160000 3213814 1776413 973624 9681280 2982097 2542802 6634154 5367844 1678908 11159300 TRUE FALSE FALSE 3928715.837 1984149.048 1333808.033 10210143.81 2685188.952 2675939.181 5216712.802 4051371.843 2015849.436 8377491.882 0.468960865 0.236842849 0.159213289 1.218759022 0.320524208 0.319420086 0.622705802 0.483602002 0.240626844 1 22.99808695 -10.78225378 2.859635567 1.129105102 0.458030357 0.245194917 0.28813193 241939176.9 189006174.3 218045716.6 0.07156874 1.65E-11 10.78225378 -0.671074744 KDDSHS(ph)AEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A486_30min_R1 9 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 KDDS(0.169)HS(0.831)AEDS(1)EDEKEDHKNVR;KDDS(0.031)HS(0.969)AEDS(1)EDEKEDHKNVR;KDDS(0.155)HS(0.845)AEDS(1)EDEKEDHKNVR;KDDS(0.013)HS(0.987)AEDS(1)EDEKEDHKNVR;KDDS(0.251)HS(0.749)AEDS(1)EDEKEDHKNVR;KDDS(0.172)HS(0.828)AEDS(1)EDEKEDHKNVR;KDDS(0.006)HS(0.994)AEDS(1)EDEKEDHKNVR;KDDS(0.136)HS(0.864)AEDS(1)EDEKEDHKNVR;KDDS(0.463)HS(0.539)AEDS(0.998)EDEKEDHKNVR ;;;;;;;; 179.86 2.22E-19 76084590000 3581439 2830525 872471.3 5164326 2329809.1 4817578 7953916 6781050 2100901.2 11131662 TRUE FALSE FALSE 3330398.621 2606223.89 1210315.553 12022811.92 2037582.718 4223234.208 5963762.089 5237152.944 2283009.008 8344221.38 0.39912635 0.312338776 0.145048351 1.440854859 0.244190875 0.506126817 0.714717625 0.627638303 0.2736036 1 22.992346 -11.54348754 2.211485601 8.501898932 0.52887802 0.144209688 0.351250787 13065699.43 939074.1055 491209817.3 0.086733508 2.86E-12 11.54348754 -7.973020912 KDDSHS(ph)AEDSEDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 1 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KDDSHS(0.68)AEDS(0.32)EDEKEDHKNVR 164.28 6.52E-14 535480000 286010 204340 139360 724910 330540 298580 615980 592440 227010 1012300 TRUE FALSE FALSE 349631.9378 228235.7855 190915.0633 764509.9977 297630.277 314213.1871 484370.8409 447143.1611 272568.8247 759952.24 0.460070935 0.300329117 0.251219818 1.005997427 0.391643397 0.413464387 0.637370108 0.58838324 0.35866573 1 19.53554923 -14 0.26330703 4.279658989 0.456457875 0.348348196 0.207181534 237.7296124 2.331188004 423.0898536 0.27568058 1.00E-14 14 -3.823201114 KDDSHSAEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 3 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK ;; 322.63 3.83E-90 8942500000 3104660 1062660 684230 8179300 1804140 1555350 3515430 1870070 1194510 9405000 TRUE FALSE FALSE 3795280.906 1186928.843 937355.1502 8626114.448 1624513.487 1636785.721 2764329.662 1411432.4 1434237.2 7060506.586 0.537536629 0.16810817 0.132760325 1.221741577 0.230084551 0.231822703 0.391520017 0.199905259 0.203135169 1 22.75134027 -10.19717113 4.571397339 1.000130847 0.368405465 0.27494164 0.307646535 621263668.8 219.5373076 882930.3118 0.077847901 6.35E-11 10.19717113 -0.631725382 KDDSHSAEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 5 KDDSHSAEDSEDEKEDHK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK;KDDSHSAEDS(1)EDEKEDHK ;;;; 332.66 5.62E-102 6131239000 3195500 2031698 582361 3383417 1307638 4640460 5876790 4193590 1979943 8019320 TRUE FALSE FALSE 2971511.952 1870698.851 807866.7754 7876765.764 1143621.849 4067967.226 4406354.984 3238801.102 2151566.053 6011230.075 0.494326771 0.311200674 0.134392922 1.310341755 0.190247559 0.67672792 0.733020518 0.538791738 0.357924423 1 22.51922881 -14 0.207762091 3.093589585 0.469356629 0.155657048 0.321394538 286.4049377 2.85125458 251.7771138 0.700521145 1.00E-14 14 -2.624232956 KDDSHSAEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A485_30min_R1 5 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDS(0.015)HS(0.056)AEDS(0.929)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR ;;;; 224.53 1.05E-35 5029360000 823715 393693 214545.7 1621981 674096 701567 1369078 1218925 414830 2227853 TRUE FALSE FALSE 1006947.56 439731.9717 293915.0824 1710585.715 606980.6353 738299.9633 1076563.301 919981.7325 498082.576 1672490.248 0.602064832 0.2629205 0.175735005 1.022777692 0.362920284 0.44143753 0.643688836 0.550067024 0.297808957 1 20.67356637 -10.85191352 2.633162877 1.209174711 0.486406142 0.311347075 0.230035683 72894532.67 47490801.1 95861032.55 0.05860108 1.41E-11 10.85191352 -0.722768569 KDDSHSAEDS(ph)EDEKEDHKNVR ddPTM_HeLa_A486_30min_R1 6 KDDSHSAEDSEDEKEDHKNVR 21 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHS(0.001)AEDS(0.999)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHSAEDS(1)EDEKEDHKNVR;KDDSHS(0.001)AEDS(0.999)EDEKEDHKNVR ;;;;; 226.03 8.79E-36 16927420000 1747977 1140514 381527 1813290 963309 2084046 2854150 2413220 806031 3999360 TRUE FALSE FALSE 1625452.839 1050135.517 529264.472 4221430.759 842481.8027 1826937.594 2140011.482 1863782.486 875898.4161 2997894.225 0.542198196 0.35029105 0.176545412 1.408131989 0.281024526 0.609406956 0.713838222 0.621697214 0.292171221 1 21.51551805 -11.45092974 2.274313572 5.634730632 0.563142651 0.140054094 0.330227689 35439790.55 1776363.83 852155602 0.083401396 3.54E-12 11.45092974 -5.071587981 KDDVS(ph)PVMQFSSK ddPTM_HeLa_A485_30min_R1 1 KDDVSPVMQFSSK 13 1 Q8IZE3-2;Q8IZE3 Q8IZE3-2 SCYL3 Protein-associating with the carboxyl-terminal domain of ezrin 1 0 KDDVS(1)PVMQFSSK 128.1 1.48E-05 128840000 110630 87179 56575 136010 132320 118580 184660 178270 78082 219030 TRUE FALSE FALSE 135239.2618 97373.82569 77504.44678 143439.8819 119145.7562 124788.6654 145205.8825 134549.003 93752.34119 164429.8519 0.822473901 0.592190679 0.471352652 0.872346963 0.724599303 0.758917337 0.883087108 0.818276009 0.570166184 1 17.32711272 -5.278165832 24.99292299 0.794460769 0.625024218 0.265171908 0.132990919 1084.917526 1621098.191 0.036816138 0.054767794 5.27E-06 5.278165832 -0.169436551 KDEET(ph)EES(ph)EYDS(ph)EHENSEPVTNIR ddPTM_HeLa_A486_30min_R1 1 KDEETEESEYDSEHENSEPVTNIR 24 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 3 0 KDEET(1)EES(0.918)EY(0.084)DS(0.998)EHENS(0.001)EPVTNIR 119.35 4.11E-05 655490000 347600 408210 148580 195860 258190 477820 507180 439900 358240 575240 TRUE FALSE FALSE 323235.035 375861.9529 206114.1551 455971.9782 225805.4027 418871.4265 380278.1996 339744.3729 389292.5316 431196.1598 0.749624104 0.871672774 0.478005544 1.057458347 0.52367211 0.97141734 0.881914625 0.787911407 0.902820034 1 18.7179848 KDEET(ph)EESEY(ph)DS(ph)EHENSEPVTNIR ddPTM_HeLa_A485_30min_R1 1 KDEETEESEYDSEHENSEPVTNIR 24 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 3 0 KDEET(0.866)EES(0.54)EY(0.598)DS(0.932)EHENS(0.062)EPVT(0.001)NIR 45.135 0.0061855 0 67322 47503 35774 116390 62543 41295 62239 38810 42031 142890 TRUE FALSE FALSE 82297.54664 53058.06263 49008.29128 122748.091 56315.99932 43457.14235 48941.1292 29291.78665 50466.23617 107270.1527 0.767198933 0.494620929 0.456867918 1.144289328 0.524992255 0.405118677 0.456241815 0.273065582 0.470459255 1 16.71088918 -10.20063544 4.676223618 1.000052955 0.550992958 0.253343468 0.22922595 0.000207154 3.54E-05 0.23440346 0.056840845 6.30E-11 10.20063544 -0.449059997 KDEGEGAAGAGDHKDPS(ph)LGAGEAASK ddPTM_HeLa_A485_30min_R1 1 KDEGEGAAGAGDHKDPSLGAGEAASK 26 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 KDEGEGAAGAGDHKDPS(1)LGAGEAASK 184.03 1.58E-20 532430000 479440 271880 138460 948680 445430 386190 843040 830200 311910 1353700 TRUE FALSE FALSE 586089.774 303674.001 189682.1158 1000503.986 401081.4252 406410.3112 662917.617 626592.1483 374507.476 1016247.503 0.576719522 0.298818939 0.186649527 0.984508186 0.394669039 0.399912728 0.652319061 0.616574355 0.368519947 1 19.95482038 -14 0.250174048 4.008031984 0.455265414 0.325653944 0.214386365 222.3769325 2.206892471 342.4310133 0.313412004 1.00E-14 14 -3.552766571 KDEGEGAAGAGDHKDPS(ph)LGAGEAASK ddPTM_HeLa_A486_30min_R1 2 KDEGEGAAGAGDHKDPSLGAGEAASK 26 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 KDEGEGAAGAGDHKDPS(1)LGAGEAASK;KDEGEGAAGAGDHKDPS(1)LGAGEAASK ; 175.3 1.07E-14 1747560000 2704900 2905600 1742160 1273080 2524610 3015900 3730600 3284500 2218810 3774800 TRUE FALSE FALSE 2515300.478 2675349.674 2416771.009 2963794.578 2207949.873 2643828.921 2797164.422 2536691.05 2411138.237 2829565.51 0.888935234 0.945498404 0.854113821 1.047438049 0.780314103 0.934358619 0.988549094 0.8964949 0.852123136 1 21.43214911 KDELS(ph)DWS(ph)LAGEDDRDSR ddPTM_HeLa_A485_30min_R1 1 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114-3;P51114;H7C4S4;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 2 0 KDELS(1)DWS(1)LAGEDDRDSR 73.672 0.019794 113810000 159990 118110 75865 206540 134210 114620 172670 147290 98844 224340 TRUE FALSE FALSE 195579.2235 131921.9371 103930.6205 217822.7572 120847.5812 120621.326 135777.6439 111166.8966 118681.0841 168416.1667 1.161285329 0.783309226 0.617105962 1.293360142 0.71755333 0.7162099 0.806203149 0.660072597 0.70468938 1 17.36167111 KDELS(ph)DWS(ph)LAGEDDRDSR ddPTM_HeLa_A486_30min_R1 1 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114-3;P51114;H7C4S4;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 2 0 KDELS(1)DWS(1)LAGEDDRDSR 72.227 0.021724 118390000 316950 314480 159670 185000 232330 371960 455090 399220 270740 492280 TRUE FALSE FALSE 294733.4417 289559.4595 221498.5001 430689.3494 203189.005 326071.357 341221.6685 308326.3209 294207.9612 369009.8838 0.798714221 0.784692964 0.60025086 1.167148546 0.550632961 0.883638546 0.924695201 0.835550305 0.797290192 1 18.49329993 -13.99999996 0.113649303 1.580533349 0.719440734 0.116830009 0.159814917 362.4279136 2.709637853 48.90323234 1.755625167 1.00E-14 13.99999996 -0.861092615 KDELS(ph)DWSLAGEDDRDSR ddPTM_HeLa_A485_30min_R1 1 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114-3;P51114;H7C4S4;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 KDELS(0.998)DWS(0.002)LAGEDDRDSR 138.08 1.16E-06 291180000 190120 150420 116510 284680 200440 175740 214170 208790 176760 346400 TRUE FALSE FALSE 232411.5381 168010.3105 159611.8974 300231.3476 180483.4898 184941.4747 168410.8299 157583.9251 212234.1107 260048.855 0.893722597 0.646072103 0.613776582 1.154519013 0.694036856 0.711179731 0.647612272 0.605978154 0.816131687 1 17.98842316 KDELSDWSLAGEDDRDS(ph)R ddPTM_HeLa_A486_30min_R1 1 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114-3;P51114;H7C4S4;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 KDELSDWSLAGEDDRDS(1)R 128.12 4.54E-06 70906000 56262 57660 33178 21375 54581 61523 66638 60689 46669 73134 TRUE FALSE FALSE 52318.32434 53090.81161 46025.41014 49762.08023 47734.94203 53932.91778 49964.46758 46871.43953 50714.3065 54820.77038 0.954352228 0.96844337 0.839561535 0.907723111 0.870745553 0.983804449 0.911414911 0.854994178 0.925092919 1 15.74243498 KDELSDWSLAGEDDRDSR ddPTM_HeLa_A485_30min_R1 1 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114-3;P51114;H7C4S4;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 0 0 101.49 0.00022566 83908000 102210 87650 79664 118090 119480 92499 122250 104230 97912 154220 FALSE FALSE TRUE 124946.2619 97899.90505 109135.0287 124540.9577 107584.1517 97342.10461 96130.28881 78667.42907 117562.0403 115775.7922 1.07920887 0.845599094 0.942641174 1.075708102 0.929245653 0.840781158 0.830314239 0.67948081 1.015428511 1 16.8209741 -6.10496975 4.383614397 0.851248356 0.975686684 0.174967473 0.108714787 0.35582521 11.42142327 0.035775003 0.036189013 7.85E-07 6.10496975 0.124438327 KDES(ph)PATWR ddPTM_HeLa_A486_30min_R1 1 KDESPATWR 9 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KDES(0.999)PAT(0.001)WR 92.247 0.0018774 308610000 65742 64944 42215 38215 74643 89512 97557 71018 53221 95054 TRUE FALSE FALSE 61133.82529 59797.60092 58561.77856 88966.45128 65280.57892 78468.91953 73147.20675 54848.75171 57834.23913 71251.8597 0.857996206 0.839242669 0.821898247 1.248619357 0.916194738 1.101289424 1.026600668 0.769786949 0.811687433 1 16.12064005 -13.8797846 13.75401128 0.977876298 0.941766087 0 0.144652216 0 0 0 0.034671126 1.32E-14 13.8797846 -0.036110211 KDEWGLVAPIS(ph)PGPLT(ph)PMR ddPTM_HeLa_A485_30min_R1 4 KDEWGLVAPISPGPLTPMR 19 1 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 KDEWGLVAPIS(1)PGPLT(1)PMR;KDEWGLVAPIS(1)PGPLT(1)PMR;KDEWGLVAPIS(1)PGPLT(1)PMR;KDEWGLVAPIS(1)PGPLT(1)PMR ;;; 137.26 1.12E-06 763263000 1175529 1188584 952775 1249450 1288970 1178473 1374620 1005610 865337 1417090 TRUE FALSE FALSE 1437021.371 1327578.559 1305246.121 1317704.29 1160635.621 1240176.024 1080921.207 758982.5708 1039002.199 1063835.543 1.35079278 1.247917095 1.226924716 1.238635331 1.090991581 1.165759156 1.016060438 0.713439757 0.976656783 1 20.02084371 -6.545811933 1.080842403 0.88091152 1.261153773 0.712145124 0.093872165 0.26354084 0.630487779 0.058879499 0.040726078 2.85E-07 6.545811933 0.380242254 KDEWGLVAPIS(ph)PGPLT(ph)PMR ddPTM_HeLa_A486_30min_R1 3 KDEWGLVAPISPGPLTPMR 19 1 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 KDEWGLVAPIS(1)PGPLT(1)PMR;KDEWGLVAPIS(1)PGPLT(1)PMR;KDEWGLVAPIS(1)PGPLT(1)PMR ;; 160.52 2.11E-12 638183000 1536900 1465110 966453 522391 1414370 1272260 1379690 1276860 1234710 1635460 TRUE FALSE FALSE 1429171.247 1349009.348 1340689.484 1216152.648 1236966.526 1115301.497 1034476.969 986146.8517 1341735.657 1225930.171 1.165785198 1.100396564 1.093609992 0.992024405 1.009002434 0.9097594 0.843830255 0.804407033 1.094463362 1 20.22544537 -5.379641616 1.050496692 0.916469461 1.14924669 0.509204265 0.078690472 0.451692301 0.974038272 0.031213912 0.076818304 4.17E-06 5.379641616 0.232777229 KDEWGLVAPIS(ph)PGPLTPMR ddPTM_HeLa_A485_30min_R1 3 KDEWGLVAPISPGPLTPMR 19 1 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KDEWGLVAPIS(1)PGPLTPMR;KDEWGLVAPIS(1)PGPLTPMR;KDEWGLVAPIS(1)PGPLTPMR ;; 195.64 2.29E-19 5850930000 2617810 2830820 2568180 3201130 3885390 3052400 3956550 3579520 3008800 4095950 TRUE FALSE FALSE 3200132.803 3161859.774 3518256.653 3375999.626 3498546.929 3212218.944 3111200.77 2701637.108 3612638.562 3074905.045 1.040725732 1.028278834 1.144183837 1.097919961 1.137773973 1.044656305 1.011803852 0.878608304 1.174878088 1 21.55211043 -6.536534483 4.251420321 1.007495069 1.090229754 0.172441487 0.075038087 0.335218636 14.48171446 0.028484269 0.022681807 2.91E-07 6.536534483 0.082734685 KDEWGLVAPIS(ph)PGPLTPMR ddPTM_HeLa_A486_30min_R1 5 KDEWGLVAPISPGPLTPMR 19 1 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KDEWGLVAPIS(1)PGPLTPMR;KDEWGLVAPIS(1)PGPLTPMR;KDEWGLVAPIS(0.988)PGPLT(0.012)PMR;KDEWGLVAPIS(1)PGPLTPMR;KDEWGLVAPIS(1)PGPLTPMR ;;;; 145.63 1.29E-08 6005622000 3257022 3489170 2258608 1244017 3723000 3323920 3851920 3819490 3126220 3935350 TRUE FALSE FALSE 3028721.577 3212675.462 3133201.505 2896134.445 3256026.624 2913848.546 2888128.875 2949875.506 3397203.267 2949912.745 1.026715648 1.089074742 1.062133621 0.981769529 1.103770486 0.987774486 0.979055696 0.999987376 1.15162839 1 21.49224085 -5.086463778 24.99997192 1.027940277 1.062331663 0.05746824 0.055434122 212.3642411 61397.54635 0.014890243 0.025790691 8.19E-06 5.086463778 0.034391386 KDGADFAK(ac)WR ddPTM_HeLa_A485_30min_R1 1 KDGADFAKWR 10 2 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;J3KSV6;K7EKH5;A8MVZ9;C9J8F3;J3QKP5 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 KDGADFAK(1)WR 116.03 0.015276 70100000 31075 41286 38319 33159 56570 41824 52844 63322 37790 44394 FALSE TRUE FALSE 37987.52654 46114.03856 52494.79269 34970.39221 50937.69217 44013.83997 41553.4477 47792.18021 45374.10637 33327.39281 1.139828932 1.383667748 1.575124492 1.049298768 1.528403151 1.32065056 1.246825635 1.434020971 1.361465826 1 15.02442084 -10.05689767 10.29457704 1.000000004 1.342819043 0.302773904 0.153559991 2.09E-10 0 0.140933363 0.034181361 8.77E-11 10.05689767 0.34281904 KDGADFAK(ac)WR ddPTM_HeLa_A486_30min_R1 1 KDGADFAKWR 10 2 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78;P09972;J3KSV6;K7EKH5;A8MVZ9;C9J8F3;J3QKP5 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 KDGADFAK(1)WR 142.97 0.0028235 44117000 46422 50831 32554 17452 59091 46668 55188 57790 39875 51494 FALSE TRUE FALSE 43168.05752 46802.96644 45159.78063 40629.13798 51679.25578 40910.57665 41379.37868 44632.47855 43331.39711 38599.56723 1.118355998 1.212525678 1.16995562 1.052580142 1.338855834 1.059871381 1.072016648 1.156294792 1.122587641 1 15.23629705 KDGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_HeLa_A485_30min_R1 2 KDGNASGTTLLEALDCILPPTRPTDKPLR 29 3 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ; ; 180.71 1.58E-20 538710000 350610 215763 209973 492850 357600 243640 335040 259120 302340 625180 FALSE FALSE TRUE 428601.9849 240994.606 287650.7504 519773.1475 321996.0884 256396.6137 263455.967 195570.4137 363016.8648 469334.1316 0.913212903 0.513481952 0.612891181 1.107469311 0.686070044 0.546298674 0.561339884 0.416697616 0.773472118 1 18.84025586 -4.229753485 22.44977824 0.674497799 0.913214568 0.089387494 0.207067141 7922.218245 5612599.871 0.052721804 5.61017113 5.89E-05 4.229753485 0.238716768 KDGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_HeLa_A486_30min_R1 1 KDGNASGTTLLEALDCILPPTRPTDKPLR 29 3 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 139.81 4.01E-07 237360000 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 KDGS(ph)SPPLLEK ddPTM_HeLa_A485_30min_R1 1 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 KDGS(0.751)S(0.249)PPLLEK 128.96 2.82E-05 1101600000 889090 674830 456030 1363400 1044500 889640 1502600 1527100 715190 1720000 TRUE FALSE FALSE 1086865.003 753745.4983 624734.474 1437879.09 940505.9125 936220.1748 1181557.235 1152576.331 858722.0729 1291235.654 0.841724746 0.583739688 0.483826846 1.113568298 0.72837666 0.725057561 0.915059332 0.892615013 0.665039004 1 20.30032089 -6.020462533 0.045387736 1.55046053 1.38E-09 0.148102389 0.169516808 257.9950395 3.978351318 57.76364378 77.37083148 9.54E-07 6.020462533 -1.550460529 KDGS(ph)SPPLLEK ddPTM_HeLa_A486_30min_R1 1 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 KDGS(0.852)S(0.148)PPLLEK 146 5.26E-07 1109800000 1175500 970140 412430 506460 935310 1184300 1503000 1347900 817880 1592500 TRUE FALSE FALSE 1093103.52 893262.5732 572133.9413 1179064.475 817994.6984 1038193.107 1126933.503 1041012.594 888774.4969 1193727.635 0.915705969 0.748296804 0.479283485 0.987716495 0.685243999 0.869706855 0.944045752 0.872068774 0.744537088 1 20.18704227 -6.379853678 7.188168457 0.883104673 0.759357065 0.160471716 0.140496543 0.520289283 28.82743787 0.049498902 0.043546001 4.17E-07 6.379853678 -0.123747609 KDGSS(ph)PPLLEK ddPTM_HeLa_A485_30min_R1 3 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 KDGS(0.252)S(0.748)PPLLEK;KDGS(0.248)S(0.752)PPLLEK;KDGS(0.205)S(0.795)PPLLEK ;; 136.81 1.09E-05 2107950000 2062630 1557640 1026850 3214370 2461460 2145330 3465470 3563140 1724870 4006300 TRUE FALSE FALSE 2521454.928 1739792.448 1406724.546 3389962.894 2216388.4 2257656.161 2725044.024 2689274.328 2071035.588 3007603.14 0.838360252 0.578464766 0.467722795 1.127131053 0.736928476 0.750649622 0.906051729 0.894158638 0.688600022 1 21.52018278 -1.875137458 0.08220819 1.138866759 3.94E-12 0.152348388 0.17147754 289.6555524 2.066663647 4.912301853 37.89808195 0.013330994 1.875137458 -1.138866759 KDGSS(ph)PPLLEK ddPTM_HeLa_A486_30min_R1 3 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 KDGS(0.249)S(0.751)PPLLEK;KDGS(0.483)S(0.517)PPLLEK;KDGS(0.431)S(0.569)PPLLEK ;; 124.25 3.87E-05 2672080000 3287130 3065330 1303030 1672360 2895030 3785360 4685200 4241810 2479770 4946700 TRUE FALSE FALSE 3056719.162 2822422.087 1807598.112 3893338.596 2531908.342 3318360.77 3512913.405 3276042.461 2694718.46 3708014.122 0.824354779 0.761168106 0.48748415 1.049979441 0.682820577 0.894915893 0.947384041 0.883503232 0.726728208 1 21.82221531 -5.268278137 24.98049457 0.873525738 0.698018921 0.30529126 0.132414221 694.0975829 2535387.432 0.036310157 0.055232734 5.39E-06 5.268278137 -0.175506817 KDIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_HeLa_A485_30min_R1 4 KDIDHETVVEEQIIGENSPPDYSEYMTGK 29 1 P25490;A0A494C032;H0YJU4;H0YJV7 P25490 YY1 Transcriptional repressor protein YY1 1 0 KDIDHETVVEEQIIGENS(0.995)PPDY(0.001)S(0.004)EYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK ;;; 273.54 3.63E-77 1332380000 884247 763556 615116 1076960 1056770 964470 1194760 1247170 816068 1618560 TRUE FALSE FALSE 1080944.695 852847.2321 842673.0055 1135791.598 951554.2683 1014968.158 939489.7657 941299.602 979845.3622 1215082.779 0.889605805 0.701884058 0.69351078 0.934744214 0.783118882 0.835307828 0.773189927 0.774679403 0.806402147 1 20.21262317 -8.065725017 19.08809053 1.000000001 0.795654993 0.42032201 0.070762385 1383.876454 401912.0258 0.068017654 0.017562061 8.60E-09 8.065725017 -0.204345008 KDIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_HeLa_A486_30min_R1 4 KDIDHETVVEEQIIGENSPPDYSEYMTGK 29 1 P25490;A0A494C032;H0YJU4;H0YJV7 P25490 YY1 Transcriptional repressor protein YY1 1 0 KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(1)PPDYSEYMTGK;KDIDHETVVEEQIIGENS(0.997)PPDY(0.002)SEYMTGK ;;; 200.86 1.22E-28 1559052000 660407 726399 522397 160337.8 797025 727260 874250 768404 675362 753171 TRUE FALSE FALSE 614115.8796 668836.4977 724683.1087 373274.5014 697054.6925 637538.0554 655503.4031 593455.1833 733902.9219 564572.0793 1.087754606 1.184678666 1.283597144 0.661163588 1.234660229 1.129241206 1.161062382 1.051159285 1.299927766 1 19.10679826 KDKS(ph)PVREPIDNLTPEER ddPTM_HeLa_A485_30min_R1 7 KDKSPVREPIDNLTPEER 18 3 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;H0Y4X3;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER ;;;;;; 194.75 8.04E-18 70111700000 6506480 4598750 3345540 10842890 7245430 6786440 11740600 10505590 5138160 13374300 TRUE FALSE FALSE 7953824.029 5136533.809 4583194.466 11435209.63 6524049.549 7141767.505 9232124.898 7929077.58 6169341.582 10040333.15 0.792187262 0.511589978 0.456478326 1.13892731 0.649784171 0.711307822 0.919503842 0.789722559 0.614455864 1 23.2593038 -14 0.036881987 2.183856631 1.71E-09 0.149215098 0.188593581 1916.037774 5.280781517 269.4418378 88.74669647 1.00E-14 14 -2.183856629 KDKS(ph)PVREPIDNLTPEER ddPTM_HeLa_A486_30min_R1 9 KDKSPVREPIDNLTPEER 18 3 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;H0Y4X3;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER;KDKS(1)PVREPIDNLTPEER ;;;;;;;; 208.69 1.76E-25 1.05E+11 12790400 11466610 5081970 7016260 10979440 15126270 19592220 17688120 9658850 20558600 TRUE FALSE FALSE 11893859.01 10557954.06 7049844.884 16334207.86 9602296.256 13260144.6 14690039.33 13660921.2 10496086.89 15410592.75 0.771797633 0.685110186 0.457467471 1.059933783 0.623097139 0.860456494 0.953242979 0.88646306 0.681095599 1 23.87741902 -5.258194918 24.99687479 0.854838615 0.642823621 0.339833223 0.145093449 347.3720951 2676307.787 0.039028252 0.064134996 5.52E-06 5.258194918 -0.212014995 KDLGSTEDGDGT(ph)DDFLT(ph)DKEDEK ddPTM_HeLa_A486_30min_R1 1 KDLGSTEDGDGTDDFLTDKEDEK 23 2 Q15527 Q15527 SURF2 Surfeit locus protein 2 2 0 KDLGSTEDGDGT(1)DDFLT(1)DKEDEK 162.12 5.23E-14 92333000 95285 78719 22518 122370 45641 112300 206550 143300 56577 334910 TRUE FALSE FALSE 88606.01355 72481.01975 31237.57265 284883.5442 39916.28019 98445.56778 154869.0053 110673.7182 61481.13991 251046.3561 0.352946822 0.288715681 0.1244295 1.134784622 0.15899964 0.392140995 0.616894058 0.44084973 0.244899551 1 17.93759426 -10.67540639 2.497432491 1.088919589 0.424141053 0.286799493 0.275523937 16832514.91 13342672.14 9506268.914 0.069963312 2.11E-11 10.67540639 -0.664778535 KDLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_HeLa_A485_30min_R1 2 KDLGSTEDGDGTDDFLTDKEDEK 23 2 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 KDLGSTEDGDGT(1)DDFLTDKEDEK;KDLGS(0.001)T(0.001)EDGDGT(0.998)DDFLTDKEDEK ; 243.55 7.11E-49 524150000 430870 244436 131664 1076060 337770 340536 696980 539780 258263 1315040 TRUE FALSE FALSE 526715.545 273020.6639 180371.9926 1134842.433 304140.4328 358365.9384 548064.5292 407398.1087 310094.0152 987224.7295 0.533531555 0.276553712 0.182706113 1.149527964 0.308076189 0.363003405 0.555156808 0.412670081 0.314106815 1 19.91301901 -10.11620763 4.544679278 1.000048609 0.4568733 0.289384037 0.256179185 131852526 73374154.89 64329.8603 0.061692251 7.65E-11 10.11620763 -0.543175309 KDLGSTEDGDGTDDFLT(ph)DKEDEK ddPTM_HeLa_A485_30min_R1 2 KDLGSTEDGDGTDDFLTDKEDEK 23 2 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 KDLGSTEDGDGTDDFLT(1)DKEDEK;KDLGS(0.003)T(0.003)EDGDGT(0.168)DDFLT(0.825)DKEDEK ; 286.37 1.93E-75 895520000 739990 299076 188462 1716830 427453 588710 1023820 688940 335578 2310240 TRUE FALSE FALSE 904598.2226 334050.3366 258181.9364 1810616.076 384894.2784 619533.9453 805072.4932 519976.3848 402925.4265 1734339.685 0.521580767 0.192609521 0.148864688 1.043980076 0.221925544 0.357216035 0.464195394 0.299812309 0.232322094 1 20.72595506 -10.15516893 4.289286922 1.000129265 0.387533025 0.356763303 0.246952771 207775387.7 362119898.8 396472.3468 0.061200961 7.00E-11 10.15516893 -0.61259624 KDLSLGLDDS(ph)RT(ph)NTPQGVLPSSQLK ddPTM_HeLa_A485_30min_R1 1 KDLSLGLDDSRTNTPQGVLPSSQLK 25 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 KDLSLGLDDS(0.872)RT(0.634)NT(0.493)PQGVLPSSQLK 111.89 0.0015664 80681000 90707 73793 54704 113510 126510 106220 171920 178930 74847 169250 TRUE FALSE FALSE 110884.4592 82422.44944 74941.28602 119710.7639 113914.2202 111781.515 135187.8875 135047.1369 89868.10636 127059.0898 0.872699933 0.648693844 0.589814441 0.942166074 0.896545224 0.879760079 1.063976515 1.062868758 0.707293799 1 16.95514006 -5.278275558 24.33516632 0.940040936 0.698231858 0.449877029 0.117639562 486.9650396 703862.6817 0.03328583 0.049534458 5.27E-06 5.278275558 -0.241809078 KDLSLGLDDS(ph)RTNT(ph)PQGVLPSSQLK ddPTM_HeLa_A485_30min_R1 2 KDLSLGLDDSRTNTPQGVLPSSQLK 25 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 KDLSLGLDDS(0.997)RT(0.005)NT(0.997)PQGVLPSSQLK;KDLSLGLDDS(0.873)RT(0.526)NT(0.601)PQGVLPSSQLK ; 237.32 2.90E-48 960040000 473980 375390 234540 657370 641150 543810 827180 908580 432830 867580 TRUE FALSE FALSE 579415.2158 419288.595 321306.106 693280.4586 577314.8548 572283.0507 650446.2356 685749.3304 519695.0108 651308.2726 0.889617467 0.643763656 0.493324159 1.064442888 0.886392633 0.878666946 0.998676453 1.05287981 0.797924781 1 19.31298103 -5.269903218 24.99898223 0.952231933 0.672387946 0.536417285 0.118654707 462.2096055 1365191.72 0.033284199 0.050267528 5.37E-06 5.269903218 -0.279843987 KDLSLGLDDS(ph)RTNT(ph)PQGVLPSSQLK ddPTM_HeLa_A486_30min_R1 2 KDLSLGLDDSRTNTPQGVLPSSQLK 25 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 KDLSLGLDDS(0.656)RT(0.344)NT(1)PQGVLPSSQLK;KDLSLGLDDS(0.992)RT(0.086)NT(0.922)PQGVLPSSQLK ; 198.81 1.38E-27 886410000 594250 591110 301880 286200 642640 732500 867280 900280 485750 842340 TRUE FALSE FALSE 552596.1437 544268.2908 418776.0206 666288.0637 562034.0988 642131.5975 650277.3708 695305.897 527855.2011 631412.5813 0.875174426 0.861985185 0.663236738 1.055234063 0.890121793 1.016976247 1.02987712 1.101191072 0.835990946 1 19.26822348 -5.277522697 24.99287216 0.992764167 0.806317411 0.481998246 0.090055775 662.8556628 1030051.213 0.024899244 0.037065015 5.28E-06 5.277522697 -0.186446757 KDLYANTVLSGGTTMYPGIADR ddPTM_HeLa_A485_30min_R1 4 KDLYANTVLSGGTTMYPGIADR 22 1 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 209.41 9.84E-30 1231572000 293639 382073 375077 328431 478227 436856 526769 549491 399145 483367 FALSE FALSE TRUE 358957.9825 426753.1138 513833.5906 346372.3539 430613.0407 459729.1047 414220.4998 414727.4707 479249.7403 362872.5026 0.989212409 1.176041477 1.416016884 0.954529074 1.18667862 1.266916345 1.141504239 1.142901343 1.320711095 1 18.46910321 -5.286168638 24.99390642 1.157405157 1.191985574 0.019430164 0.140526855 5399.165008 5456934.531 0.0395177 0.058651062 5.17E-06 5.286168638 0.034580417 KDLYANTVLSGGTTMYPGIADR ddPTM_HeLa_A486_30min_R1 2 KDLYANTVLSGGTTMYPGIADR 22 1 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ; ; 222.57 1.86E-35 522486000 227741 245049 216846 102933 314679 271479 291158 306586 230553 271717 FALSE FALSE TRUE 211777.532 225630.4248 300814.5785 239633.2259 275209.0256 237986.6812 218307.1888 236783.0605 250537.5197 203677.2946 1.039769957 1.107783885 1.476917587 1.176533822 1.351201301 1.168449736 1.071828793 1.162540287 1.230070932 1 17.63592564 -6.513099361 23.66679786 1.128295611 1.236875304 0.149745256 0.126896067 500.8937744 1212208.795 0.047703265 0.03923397 3.07E-07 6.513099361 0.108579693 KDNDFIYHDR ddPTM_HeLa_A485_30min_R1 2 KDNDFIYHDR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 0 ; ; 107.18 0.0011995 193513000 493220 411540 399510 643930 623430 434580 589100 440950 491810 831020 FALSE FALSE TRUE 602935.0874 459666.0231 547305.374 679106.2654 561359.1202 457333.9368 463233.9725 332806.3211 590511.7559 623862.0078 0.966455851 0.736807206 0.87728595 1.088552047 0.899812961 0.733069062 0.742526339 0.533461434 0.946542262 1 19.25086743 -6.235520783 8.792371472 0.758920061 0.911805887 0.133028383 0.145351475 0.5481698 175.1314365 0.048010344 0.047347956 5.81E-07 6.235520783 0.152885826 KDNDFIYHDR ddPTM_HeLa_A486_30min_R1 1 KDNDFIYHDR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 0 116.54 0.0005909 112020000 244660 290430 189660 90255 298140 298370 309720 305560 256060 282330 FALSE FALSE TRUE 227510.5974 267415.2691 263101.4313 210118.2012 260744.5012 261560.143 232224.7801 235990.6583 278255.487 211632.7303 1.075025574 1.263581813 1.243198209 0.992843597 1.23206132 1.235915364 1.097300875 1.115095278 1.314803653 1 17.69120324 -10.20008144 4.758930184 0.999972971 1.173219809 0.229622257 0.095823348 2.68E-05 4.51E-06 0.090636242 0.02197909 6.31E-11 10.20008144 0.173246838 KDNEESEQPPVPGT(ph)PTLR ddPTM_HeLa_A485_30min_R1 3 KDNEESEQPPVPGTPTLR 18 1 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 0 KDNEESEQPPVPGT(0.978)PT(0.022)LR;KDNEESEQPPVPGT(1)PTLR;KDNEESEQPPVPGT(0.959)PT(0.041)LR ;; 158.37 4.53E-09 1182500000 953000 673750 408490 1246340 603030 901860 1182410 1021350 717280 2402800 TRUE FALSE FALSE 1164991.562 752539.2017 559607.4497 1314424.398 542990.2158 949079.9951 929778.4441 770862.3111 861231.5167 1803826.18 0.645844691 0.417190531 0.310233578 0.72868684 0.301021363 0.526148254 0.515447915 0.427348444 0.477447066 1 20.78262889 -10.27675677 2.826978829 1.004677998 0.478652428 0.599510992 0.126652692 4240983.07 5184974.407 170486.4017 0.030777585 5.29E-11 10.27675677 -0.52602557 KDNEESEQPPVPGT(ph)PTLR ddPTM_HeLa_A486_30min_R1 1 KDNEESEQPPVPGTPTLR 18 1 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 0 KDNEESEQPPVPGT(0.864)PT(0.136)LR 101.6 0.00023491 527440000 220610 266780 206670 93358 320270 341160 324460 291550 347680 497730 TRUE FALSE FALSE 205146.3782 245639.3812 286698.1588 217342.1421 280098.7502 299071.1479 243276.6762 225170.4295 377817.1823 373095.1683 0.54985 0.658382638 0.768431712 0.582538077 0.75074344 0.801594803 0.652049924 0.60352009 1.012656326 1 18.50918415 -7.768647021 24.99978544 1.006328437 0.677169084 0.746970085 0.078023842 90.41088489 313577.8072 0.071467656 0.019987441 1.70E-08 7.768647021 -0.329159353 KDPFS(ph)PDK ddPTM_HeLa_A485_30min_R1 1 KDPFSPDK 8 1 H0YHD0;Q5PSV4-2;Q5PSV4 H0YHD0 BRMS1L Breast cancer metastasis-suppressor 1-like protein 1 0 KDPFS(1)PDK 63.727 0.015526 168820000 287160 159390 104360 694050 259060 200790 403890 259970 193400 897550 TRUE FALSE FALSE 351037.7513 178029.274 142967.1068 731964.1941 233267.0768 211303.0539 317595.602 196211.9499 232213.606 673807.3032 0.520976472 0.264213928 0.212178031 1.086310865 0.346192562 0.313595672 0.47134485 0.291198907 0.344629102 1 19.36197654 -10.28131825 3.297665273 1.00243584 0.427557528 0.343633289 0.237223146 75986892.95 109136850.1 1849960.257 0.061247025 5.23E-11 10.28131825 -0.574878312 KDPFS(ph)PDK ddPTM_HeLa_A486_30min_R1 3 KDPFSPDK 8 1 H0YHD0;Q5PSV4-2;Q5PSV4 H0YHD0 BRMS1L Breast cancer metastasis-suppressor 1-like protein 1 0 KDPFS(1)PDK;KDPFS(1)PDK;KDPFS(1)PDK ;; 84.289 0.0034621 717420000 1020040 1032350 319288 829520 701620 1445940 1840110 1546080 808110 2557420 TRUE FALSE FALSE 948540.4635 950542.8262 442924.8644 1931164.482 613616.2773 1267554.624 1379695.015 1194071.335 878157.6255 1917025.386 0.494798071 0.495842587 0.231047991 1.007375539 0.320087716 0.661209097 0.719706179 0.622877163 0.458083462 1 20.87043801 -14 0.166962387 2.626647738 0.45729216 0.296482903 0.205637215 169.0173833 1.581554053 91.61232684 0.759615933 1.00E-14 14 -2.169355578 KDPSGASNPSADS(ph)PLHR ddPTM_HeLa_A485_30min_R1 4 KDPSGASNPSADSPLHR 17 1 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 0 KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR ;;; 180.45 1.25E-17 2054260000 1600010 1882070 1699120 1743050 2473150 1956400 2404320 2964800 1918230 2382320 TRUE FALSE FALSE 1955926.705 2102161.715 2327695.194 1838268.408 2226914.502 2058834.079 1890617.391 2237678.151 2303201.166 1788451.467 1.093642595 1.175408868 1.301514319 1.02785479 1.245163508 1.151182527 1.057125354 1.251181926 1.287818657 1 20.77027954 -1.010533844 9.262267527 1.166169692 0.005832202 0 0.105255853 0 0 0.023024239 0 0.097603672 1.010533844 -1.16033749 KDPSGASNPSADS(ph)PLHR ddPTM_HeLa_A486_30min_R1 5 KDPSGASNPSADSPLHR 17 1 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 0 KDPSGASNPSADS(1)PLHR;KDPSGASNPSADS(1)PLHR;KDPSGASNPS(0.002)ADS(0.998)PLHR;KDPSGASNPSADS(1)PLHR;KDPS(0.001)GAS(0.001)NPS(0.065)ADS(0.933)PLHR ;;;; 217.86 3.93E-34 2385343000 1690142 1719120 1320710 425493 1891790 1615480 1747461 1810757 1398043 1687411 TRUE FALSE FALSE 1571671.774 1582890.67 1832124.282 990569.2072 1654504.058 1416178.503 1310227.775 1398487.16 1519226.493 1264872.302 1.242553711 1.2514233 1.448465808 0.783137717 1.308040389 1.11962172 1.035857748 1.105635057 1.201090806 1 20.27056031 -5.224506787 24.99922414 1.092887485 1.307875134 0.37146302 0.139255496 656.4739528 444358.3878 0.036240217 0.062768103 5.96E-06 5.224506787 0.21498765 KDRHDT(ph)PDPS(ph)PR ddPTM_HeLa_A485_30min_R1 6 KDRHDTPDPSPR 12 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR ;;;;; 131.56 0.00013433 1486355000 1000604 1368497 1079035 1000388 1670502 1563129 1956359 2467701 1116443 1534488 TRUE FALSE FALSE 1223184.908 1528530.82 1478214.949 1055036.663 1504180.955 1644972.017 1538366.918 1862493.461 1340502.869 1151968.382 1.061821598 1.326886088 1.283207918 0.915855574 1.305748473 1.427966291 1.335424602 1.616792171 1.163662901 1 20.13566969 -5.97992969 24.99567584 1.350970588 1.162188194 0.131500071 0.186445712 401.3659952 499861.0415 0.055924399 0.063405375 1.05E-06 5.97992969 -0.188782394 KDRHDT(ph)PDPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 KDRHDTPDPSPR 12 2 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR;KDRHDT(1)PDPS(1)PR ;; 155.22 3.23E-07 514441000 748660 665238 471799 358708 816425 635513 898094 895440 507079 948801 TRUE FALSE FALSE 696182.8001 612522.1181 654492.208 835090.3521 714021.3636 557109.8675 673381.3821 691567.8593 551033.016 711215.0539 0.978863982 0.861233342 0.920245156 1.174174179 1.003945796 0.783321253 0.946804175 0.97237517 0.77477693 1 19.43992634 KDS(ph)DTESSDLFTNLNLGR ddPTM_HeLa_A486_30min_R1 2 KDSDTESSDLFTNLNLGR 18 1 Q9Y3S2 Q9Y3S2 ZNF330 Zinc finger protein 330 1 0 KDS(0.995)DT(0.005)ESSDLFTNLNLGR;KDS(0.678)DT(0.322)ESSDLFTNLNLGR ; 172.49 1.15E-12 199775000 247861 249939 110791 125338 170244 248145 270625 239556 175868 396760 TRUE FALSE FALSE 230487.2239 230132.9234 153692.2423 291793.1982 148890.4101 217531.3929 202911.7626 185014.3283 191112.3798 297408.7135 0.774984771 0.77379348 0.516771148 0.981118525 0.500625581 0.731422393 0.682265695 0.622087786 0.64259173 1 18.18208739 -12.58394628 9.90239341 0.843201746 0.707918488 0 0.161598242 0 0 0 0.033895011 2.61E-13 12.58394628 -0.135283258 KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR ddPTM_HeLa_A485_30min_R1 2 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 0 KDS(1)EEEVSLLGSQDIEEGNHQVEDGCR;KDS(1)EEEVSLLGSQDIEEGNHQVEDGCR ; 334.58 1.40E-126 1542100000 254880 159092 113328 470150 253906 189781 365128 271863 186986 769050 TRUE FALSE FALSE 311577.1767 177696.4255 155252.7432 495833.104 228626.2271 199717.6397 287115.42 205188.173 224512.3751 577339.9883 0.539677111 0.307784718 0.268910428 0.858823421 0.395999293 0.345927259 0.497307351 0.355402669 0.388873765 1 19.13906163 -10.55990018 2.883881653 1.030199276 0.438419798 0.524526389 0.15998749 65111454.91 68650312.94 15165060.14 0.040677111 2.75E-11 10.55990018 -0.591779478 KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR ddPTM_HeLa_A486_30min_R1 1 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 0 KDS(1)EEEVSLLGSQDIEEGNHQVEDGCR 162.29 9.75E-14 595680000 103130 92888 37205 62733 94611 125560 155240 129100 84954 178390 TRUE FALSE FALSE 95901.11956 85527.21659 51611.77238 146045.5944 82744.00617 110069.6838 116397.31 99706.74823 92317.88112 133719.9829 0.717178671 0.639599368 0.385969032 1.092174791 0.618785647 0.823135641 0.870455616 0.745638356 0.690382089 1 17.02885555 -14 0.038560873 2.226440726 3.71E-10 0.205028086 0.170417435 1466.828973 4.220796341 215.0972586 67.38949216 1.00E-14 14 -2.226440725 KDS(ph)ISEDEMVLR ddPTM_HeLa_A485_30min_R1 2 KDSISEDEMVLR 12 1 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 0 KDS(0.999)IS(0.001)EDEMVLR;KDS(0.999)IS(0.001)EDEMVLR ; 135.23 9.63E-06 356570000 240870 225380 159755 361150 308310 284450 383050 357900 214020 474010 TRUE FALSE FALSE 294450.7005 251736.2305 218855.0225 380878.71 277613.5739 299343.3622 301208.2383 270124.4638 256971.8509 355848.0305 0.827461937 0.707426229 0.615023841 1.070340925 0.780146439 0.841211238 0.846451891 0.759100629 0.722139309 1 18.44090173 -11.43414809 2.320116001 3.055599868 0.797870838 0.224585516 0.113366615 7770699.873 669817.2226 85510265.58 0.030139712 3.68E-12 11.43414809 -2.257729029 KDS(ph)ISEDEMVLR ddPTM_HeLa_A486_30min_R1 2 KDSISEDEMVLR 12 1 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 0 KDS(0.998)IS(0.002)EDEMVLR;KDS(0.81)IS(0.19)EDEMVLR ; 195.89 3.08E-14 360690000 254749 263505 142720 168136 282560 317844 409580 401070 225440 484420 TRUE FALSE FALSE 236892.4106 242623.9041 197985.0062 391429.1051 247118.69 278631.6389 307098.7519 309755.1163 244981.3207 363118.079 0.652383961 0.668168065 0.545235882 1.077966446 0.680546369 0.76733067 0.845726968 0.853042397 0.674660214 1 18.47007924 -2.523632328 0.07041159 1.193626434 4.23E-18 0.264855279 0.136047254 270.0237853 1.907445803 7.147201927 33.97036725 0.002994799 2.523632328 -1.193626434 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR ddPTM_HeLa_A485_30min_R1 4 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR 41 1 H0YLG5;Q96TC7;H0YMB1;Q96TC7-2 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR ;;; 182.81 3.57E-22 436738000 12917.7 7587.4 8621.12 30153.3 14959.6 10479.9 17605.5 14923.2 12717.4 49046.4 TRUE FALSE FALSE 15791.1978 8474.680428 11810.43104 31800.49843 13470.1697 11028.61136 13843.9411 11263.2618 15269.66553 36820.03511 0.428875142 0.23016492 0.320760993 0.863673767 0.365838046 0.299527454 0.375989351 0.305900355 0.414710781 1 15.16820338 -9.88781623 3.083217206 1.000179131 0.399358099 0.543231814 0.164884813 1108628.245 1804753.622 2793.155205 0.04432425 1.29E-10 9.88781623 -0.600821033 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR ddPTM_HeLa_A486_30min_R1 3 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR 41 1 H0YLG5;Q96TC7;H0YMB1;Q96TC7-2 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 KDS(0.993)LDLEEEAAS(0.007)GASSALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHR ;; 306.2 1.13E-95 413360000 18023.7 18372.9 9153 14608.2 16714.5 25424.3 33802.2 26563.4 20622.8 36981.1 TRUE FALSE FALSE 16760.3317 16916.96449 12697.28673 34008.62786 14618.01155 22287.70836 25344.53204 20515.49369 22410.40091 27720.79185 0.604612299 0.610262671 0.458041992 1.226827431 0.52733023 0.804006916 0.91427879 0.740076034 0.808432927 1 14.75868085 -3.056883047 0.253331504 0.909584807 6.25E-36 0.217439525 0.1968182 30.65549788 1.020033847 0.262633523 9.658559055 0.000877237 3.056883047 -0.909584807 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGK ddPTM_HeLa_A485_30min_R1 2 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGK 47 2 H0YLG5;Q96TC7;H0YMB1;Q96TC7-2 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGK;KDS(0.975)LDLEEEAAS(0.014)GAS(0.005)S(0.005)ALEAGGSSGLEDVLPLLQQADELHRGDEQGK ; 172.99 3.90E-19 67361000 15019.2 8043 8107.8 36285 15750.3 16333.7 24322 17378.8 11478.9 59717 TRUE FALSE FALSE 18360.16922 8983.558885 11107.21261 38267.15767 14182.14483 17188.90728 19125.40601 13116.62205 13782.60994 44830.65091 0.409545007 0.200388768 0.247759343 0.853593622 0.316349295 0.383418642 0.426614506 0.292581566 0.307437203 1 15.45219783 -10.41917846 3.320099906 1.00723095 0.383346165 0.538974907 0.171475178 321634028.3 430522754.1 22066075.57 0.045361057 3.81E-11 10.41917846 -0.623884785 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGK ddPTM_HeLa_A486_30min_R1 1 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGK 47 2 H0YLG5;Q96TC7;H0YMB1;Q96TC7-2 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 KDS(0.998)LDLEEEAAS(0.002)GASSALEAGGSSGLEDVLPLLQQADELHRGDEQGK 84.239 2.63E-05 49798000 10805 10556 3471.4 10854 10817 18592 20744 19339 11202 29693 TRUE FALSE FALSE 10047.6253 9719.504116 4815.619047 25268.66053 9460.230995 16298.30807 15553.63179 14935.93187 12172.99838 22257.67953 0.451422858 0.436680926 0.216357641 1.135278298 0.425032222 0.732255492 0.698798443 0.671046227 0.546912285 1 14.44201557 -7.314907541 0.089862454 1.38140447 1.71E-20 0.270809372 0.225659499 17.64190367 1.585049854 11.17595679 11.72864429 4.84E-08 7.314907541 -1.38140447 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR ddPTM_HeLa_A485_30min_R1 3 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR 48 3 H0YLG5;Q96TC7;H0YMB1;Q96TC7-2 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR ;; 239.82 1.50E-54 760177000 134134.5 108188.8 50972.2 240318 129759.6 164700.3 323287 288643 92848.8 468985 TRUE FALSE FALSE 163972.2568 120840.539 69828.93791 253445.9638 116840.2786 173323.753 254214.0914 217852.8517 111482.7025 352075.6705 0.465730155 0.343223202 0.198335028 0.719862192 0.331861268 0.492291196 0.722043903 0.618767129 0.316644153 1 18.42552601 -14 0.149006238 2.841407342 0.308860013 0.483081679 0.166468426 116.9143501 1.036721372 63.95911124 0.864146328 1.00E-14 14 -2.532547328 KDS(ph)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR ddPTM_HeLa_A486_30min_R1 4 KDSLDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR 48 3 H0YLG5;Q96TC7;H0YMB1;Q96TC7-2 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 KDS(0.999)LDLEEEAAS(0.001)GASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR;KDS(1)LDLEEEAASGASSALEAGGSSGLEDVLPLLQQADELHRGDEQGKR ;;; 243.27 1.09E-54 1006810000 166549 129471 56602.4 146599 128677 203248 300091 246910 143642 395766 TRUE FALSE FALSE 154874.7752 119211.2464 78520.36514 341289.8807 112537.1308 178173.3282 225005.0578 190693.983 156093.0042 296663.6176 0.522055169 0.401839792 0.264678108 1.150427152 0.379342542 0.600590425 0.75845181 0.642795313 0.526161602 1 18.17846848 -14 0.08774955 2.225102734 0.25698266 0.242066886 0.229639711 336.7698742 2.058556398 79.42925477 5.92680497 1.00E-14 14 -1.968120073 KDS(ph)LESDSSTAIIPHELIR ddPTM_HeLa_A485_30min_R1 1 KDSLESDSSTAIIPHELIR 19 1 Q9UMX1;Q9UMX1-2;Q9UMX1-3 Q9UMX1 SUFU Suppressor of fused homolog 1 0 KDS(0.968)LES(0.024)DS(0.007)S(0.001)T(0.001)AIIPHELIR 91.618 0.00046342 212790000 115910 85552 63119 166690 101120 94158 143450 103500 86723 206100 TRUE FALSE FALSE 141693.7796 95556.5622 86469.3447 175795.8526 91052.13775 99087.96728 112800.7356 78116.46272 104127.5106 154723.063 0.915789649 0.617597405 0.558865259 1.136196823 0.588484587 0.640421443 0.729049267 0.504879242 0.672992821 1 17.23932874 -4.245563819 23.36260868 0.703229916 0.915790047 0.086285622 0.190195222 2968.124655 4367738.63 0.046282476 1.038878857 5.68E-05 4.245563819 0.212560131 KDS(ph)LESDSSTAIIPHELIR ddPTM_HeLa_A486_30min_R1 2 KDSLESDSSTAIIPHELIR 19 1 Q9UMX1;Q9UMX1-2;Q9UMX1-3 Q9UMX1 SUFU Suppressor of fused homolog 1 0 KDS(0.954)LES(0.046)DSSTAIIPHELIR;KDS(0.891)LES(0.104)DS(0.005)STAIIPHELIR ; 136.4 1.03E-06 450260000 245173 238403 149617 123850 256609 271756 396350 315017 246875 425070 TRUE FALSE FALSE 227987.6388 219511.078 207552.7093 288329.059 224422.7064 238229.5077 297179.0378 243294.5059 268274.3238 318629.7053 0.715525373 0.688922202 0.651391587 0.90490326 0.704337049 0.747668858 0.932678382 0.763565047 0.84196269 1 18.28152125 -13.99999994 0.037981911 2.186695902 0.068100325 0.542509442 0.075592811 713.8065178 2.024133457 98.83198176 31.50249725 1.00E-14 13.99999994 -2.118595576 KDS(ph)LPDADLASCGSLSQSSASFFTPR ddPTM_HeLa_A485_30min_R1 3 KDSLPDADLASCGSLSQSSASFFTPR 26 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;A0A1W2PQ63;E9PGF6 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KDS(1)LPDADLASCGSLSQSSASFFTPR;KDS(1)LPDADLASCGSLSQSSASFFTPR;KDS(1)LPDADLASCGSLSQSSASFFTPR ;; 203.49 1.43E-28 563430000 111966 79902 65990 151842 119807 98720 168049 107616 78605 200528 TRUE FALSE FALSE 136872.4504 89245.84385 90402.44707 160136.744 107878.5944 103888.8265 132143.9583 81223.00726 94380.30249 150540.06 0.909209485 0.592837839 0.600520865 1.063748373 0.716610545 0.690107514 0.877799293 0.53954414 0.626944764 1 17.19978793 -7.243003965 24.92224059 0.687433278 0.769858711 0.008148562 0.176033033 2880.119938 3893549.546 0.081891658 0.047164132 5.71E-08 7.243003965 0.082425433 KDS(ph)LPDADLASCGSLSQSSASFFTPR ddPTM_HeLa_A486_30min_R1 3 KDSLPDADLASCGSLSQSSASFFTPR 26 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;A0A1W2PQ63;E9PGF6 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KDS(1)LPDADLASCGSLSQSSASFFTPR;KDS(1)LPDADLASCGSLSQSSASFFTPR;KDS(1)LPDADLASCGSLSQSSASFFTPR ;; 237.42 1.42E-49 556850000 149605 147897 77563 74104 148918 168606 205140 202101 132777 231656 TRUE FALSE FALSE 139118.4621 136177.1031 107597.4708 172517.857 130239.3158 147805.106 153811.8023 156087.0141 144286.2173 173647.8298 0.801152898 0.784214253 0.61963038 0.993492733 0.75001983 0.851177387 0.885768641 0.898871091 0.830912874 1 17.40580485 -10.58233147 0.030429145 1.960127092 7.83E-11 0.343876891 0.08731083 731.9648975 3.499516809 139.4332927 89.76776823 2.62E-11 10.58233147 -1.960127091 KDS(ph)LSQLEEYLR ddPTM_HeLa_A486_30min_R1 1 KDSLSQLEEYLR 12 1 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 KDS(0.998)LS(0.002)QLEEYLR 118.31 0.0001086 34687000 33886 33765 28566 14517 36226 33607 37245 40540 29882 40167 TRUE FALSE FALSE 31510.76639 31089.33843 39627.52022 33796.30965 31682.19729 29460.91003 27925.90706 31309.92698 32472.19582 30108.92176 1.046559111 1.032562331 1.316138802 1.122468281 1.052252802 0.978477751 0.927496085 1.039888683 1.078490823 1 14.87790342 -5.887767001 3.370254091 1.003487799 1.136103511 0.346318766 0.080465276 0.287902378 6.431069492 0.027936324 0.032298993 1.29E-06 5.887767001 0.132615711 KDS(ph)LTQAQEQGNLLN ddPTM_HeLa_A485_30min_R1 6 KDSLTQAQEQGNLLN 15 1 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 KDS(0.962)LT(0.038)QAQEQGNLLN;KDS(0.943)LT(0.057)QAQEQGNLLN;KDS(0.999)LT(0.001)QAQEQGNLLN;KDS(0.98)LT(0.02)QAQEQGNLLN;KDS(0.995)LT(0.005)QAQEQGNLLN;KDS(0.693)LT(0.307)QAQEQGNLLN ;;;;; 146.3 2.03E-07 4073660000 3450600 3238150 2478200 5411620 4731790 4108260 6781350 6242460 3535180 7679180 TRUE FALSE FALSE 4218174.066 3616823.474 3394989.307 5707243.098 4260676.373 4323362.141 5332459.174 4711486.897 4244658.199 5764901.751 0.731699212 0.627386837 0.588906707 0.989998329 0.73907181 0.749945503 0.924987 0.817270979 0.736293242 1 22.45886459 -2.289443898 0.075868429 1.176745444 2.63E-12 0.354681116 0.107903333 194.5848751 1.404392667 4.345982596 25.09204868 0.005135185 2.289443898 -1.176745444 KDS(ph)LTQAQEQGNLLN ddPTM_HeLa_A486_30min_R1 6 KDSLTQAQEQGNLLN 15 1 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 KDS(0.949)LT(0.051)QAQEQGNLLN;KDS(0.999)LT(0.001)QAQEQGNLLN;KDS(0.984)LT(0.016)QAQEQGNLLN;KDS(0.999)LT(0.001)QAQEQGNLLN;KDS(0.979)LT(0.021)QAQEQGNLLN;KDS(0.971)LT(0.029)QAQEQGNLLN ;;;;; 146.26 2.03E-07 3438230000 5272380 5008850 2552370 2357260 4957230 5985030 7742140 7651620 4345620 7959160 TRUE FALSE FALSE 4902813.389 4611930.484 3540716.019 5487820.409 4335447.989 5246657.85 5804974.684 5909513.16 4722301.841 5966134.531 0.821773858 0.773018185 0.593469021 0.919828472 0.726676203 0.879406561 0.972987561 0.990509538 0.791517827 1 22.50836508 -6.44104358 4.047910856 0.937365043 0.766628197 0.43104117 0.093658443 0.22766496 6.90742386 0.034311264 0.029295979 3.62E-07 6.44104358 -0.170736846 KDS(ph)PWVKPSR ddPTM_HeLa_A485_30min_R1 1 KDSPWVKPSR 10 2 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 KDS(1)PWVKPSR 116.19 0.00020201 472850000 361340 237390 193670 518050 367920 323400 499890 445600 232510 660920 TRUE FALSE FALSE 441718.8364 265150.6955 265316.5923 546349.7597 331288.593 340332.7239 393084.4178 336315.9013 279172.6243 496164.8073 0.890266359 0.534400448 0.534734807 1.101145732 0.667698692 0.685926771 0.792245665 0.677831028 0.562661076 1 18.92045988 -11.27797654 2.390494429 2.313064509 0.715726909 0.206338486 0.166902441 27712489.29 6041435.361 195279077.9 0.043236656 5.27E-12 11.27797654 -1.597337601 KDS(ph)PWVKPSR ddPTM_HeLa_A486_30min_R1 1 KDSPWVKPSR 10 2 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 KDS(1)PWVKPSR 95.428 0.0010767 364310000 262460 223900 172000 137130 199330 296240 347540 311060 186960 356220 TRUE FALSE FALSE 244062.9093 206157.3486 238603.0063 319245.5702 174328.1727 259692.9207 260581.8161 240238.4284 203165.8433 267020.1934 0.914024165 0.772066509 0.893576637 1.19558587 0.652865128 0.972559107 0.975888051 0.89970135 0.760863217 1 18.02658932 -4.988778355 24.67050942 0.921637085 0.840489358 0.048295581 0.139779017 616.2852133 1354862.245 0.035854999 0.074529649 1.03E-05 4.988778355 -0.081147727 KDS(ph)QNSSQHSVSSHR ddPTM_HeLa_A485_30min_R1 1 KDSQNSSQHSVSSHR 15 1 A0A087WXD2;H7C5T8;H7C4U7;H7C535;A0A087WT53;Q96QZ7-4;Q96QZ7-3;Q96QZ7-5;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7 A0A087WXD2 MAGI1 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" 1 0 KDS(0.752)QNS(0.124)S(0.124)QHSVSSHR 55.589 0.032813 23686000 10314 16580 10078 3932.8 15948 11575 14803 19449 15344 8382.1 TRUE FALSE FALSE 12608.31372 18518.88677 13806.27158 4147.638906 14360.16112 12181.0491 11640.21812 14679.10226 18423.40006 6292.596731 2.003674199 2.942964179 2.194049956 0.65912994 2.282072368 1.935774629 1.849827443 2.332757506 2.927789726 1 12.61943977 -7.265324708 23.92681123 2.222705162 1.985248826 0 0.695190765 1034.6778 6371681.599 0.366581669 0.186881288 5.43E-08 7.265324708 -0.237456336 KDS(ph)QNSSQHSVSSHR ddPTM_HeLa_A486_30min_R1 2 KDSQNSSQHSVSSHR 15 1 A0A087WXD2;H7C5T8;H7C4U7;H7C535;A0A087WT53;Q96QZ7-4;Q96QZ7-3;Q96QZ7-5;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7 A0A087WXD2 MAGI1 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" 1 0 KDS(0.951)QNS(0.024)S(0.024)QHSVSSHR;KDS(0.333)QNS(0.333)S(0.333)QHSVSSHR ; 114.96 0.00013174 27599000 29788 14983.7 15901.3 5708.6 16186.3 24338.2 16581.9 16681.3 23778 10079.7 TRUE FALSE FALSE 27700.01503 13796.33704 22058.70921 13289.9093 14156.06332 21335.60034 12432.93323 12883.33214 25839.09619 7555.677512 3.666119283 1.825956312 2.919487918 1.758930192 1.873566374 2.823783877 1.64550872 1.705119378 3.419825177 1 12.88334541 -4.253854993 24.39057722 2.145091567 3.666120319 0.31318639 0.690242428 792.7713196 2549381.777 0.160450929 1.624915134 5.57E-05 4.253854993 1.521028752 KDS(ph)SSEVFSDAAK ddPTM_HeLa_A486_30min_R1 1 KDSSSEVFSDAAK 13 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3;A0A1B0GTZ9 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 KDS(0.896)S(0.094)S(0.01)EVFSDAAK 156 7.02E-07 0 89448 68091 31688 36527 54740 84391 97102 85958 47876 123070 TRUE FALSE FALSE 83178.15711 62695.22118 43958.44223 85036.70197 47873.99877 73979.69644 72806.05256 66387.23985 52025.93023 92252.47095 0.901636089 0.67960479 0.476501516 0.921782377 0.518945436 0.801926449 0.789204363 0.719625601 0.563951618 1 16.49329993 KDSEEEVS(ph)LLGSQDIEEGNHQVEDGCR ddPTM_HeLa_A485_30min_R1 1 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 0 KDS(0.387)EEEVS(0.602)LLGS(0.01)QDIEEGNHQVEDGCR 200.66 1.66E-28 420770000 28698 19944 9764 45879 21514 18607 37939 32782 14707 80450 TRUE FALSE FALSE 35081.77109 22276.27731 13376.10991 48385.2536 19371.99062 19581.23375 29833.02272 24742.1631 17658.56 60395.29557 0.580869267 0.368841267 0.221476024 0.801142757 0.320753304 0.324217864 0.493962691 0.40967037 0.292383038 1 15.88214856 -10.34215334 3.34214728 1.003635264 0.422941589 0.540657938 0.159357138 86792254.43 121463043.5 3111354.949 0.038296617 4.55E-11 10.34215334 -0.580693675 KDSEEEVS(ph)LLGSQDIEEGNHQVEDGCR ddPTM_HeLa_A486_30min_R1 1 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 0 KDS(0.104)EEEVS(0.833)LLGS(0.063)QDIEEGNHQVEDGCR 115.77 0.00013088 423810000 32333 32412 16907 19413 30385 39918 51445 38053 28193 63864 TRUE FALSE FALSE 30066.62367 29843.55508 23453.84319 45194.44508 26573.82997 34993.32302 38572.91687 29389.16259 30636.79194 47872.03872 0.628062319 0.623402635 0.489927812 0.944067692 0.55510128 0.730976243 0.805750453 0.613910821 0.639972576 1 15.54689563 -14 0.333599973 4.364876455 0.6604735 0.390689365 0.123123867 389.4548067 3.348037682 931.1185533 0.101766775 1.00E-14 14 -3.704402955 KDSGSSSVSSTSSSSSSS(ph)PGDK ddPTM_HeLa_A486_30min_R1 2 KDSGSSSVSSTSSSSSSSPGDK 22 1 Q9H7S9 Q9H7S9 ZNF703 Zinc finger protein 703 1 0 KDSGSSSVSSTSSSSS(0.001)S(0.028)S(0.972)PGDK;KDSGSSSVSSTSSSSSSS(1)PGDK ; 228.8 1.57E-36 216136000 205980 184964 82591 102988 149521 223603 271980 249750 160383 358730 TRUE FALSE FALSE 191541.8657 170306.779 114572.4471 239761.2687 130766.682 196017.1353 203927.7273 192887.377 174285.1276 268901.6731 0.712311915 0.633342207 0.42607562 0.891631748 0.48629925 0.728954688 0.758372847 0.717315645 0.648137015 1 18.03671921 -13.99999999 0.19843162 2.51305631 0.61101046 0.396937849 0.125038725 138.3573672 1.366709505 82.79014905 0.295093124 1.00E-14 13.99999999 -1.90204585 KDSNELS(ph)DS(ph)AGEEDSADLKR ddPTM_HeLa_A485_30min_R1 2 KDSNELSDSAGEEDSADLKR 20 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 2 0 KDS(0.007)NELS(0.993)DS(1)AGEEDSADLKR;KDS(0.036)NELS(0.967)DS(0.953)AGEEDS(0.044)ADLKR ; 144 8.41E-09 501270000 1195170 754260 480640 2287000 1171500 1082570 1967550 1633790 833390 3067150 TRUE FALSE FALSE 1461031.443 842464.1458 658448.7371 2411933.019 1054861.347 1139251.691 1547166.869 1233100.441 1000643.729 2302565.952 0.634523168 0.365880571 0.28596303 1.047497909 0.45812427 0.494774836 0.67193162 0.535533169 0.434577662 1 21.13481105 -10.26798899 3.306291207 1.001666162 0.548415415 0.316276426 0.199526728 104830829.1 153425337.2 1812931.97 0.049242078 5.40E-11 10.26798899 -0.453250747 KDSNELS(ph)DS(ph)AGEEDSADLKR ddPTM_HeLa_A486_30min_R1 3 KDSNELSDSAGEEDSADLKR 20 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 2 0 KDS(0.074)NELS(0.926)DS(0.998)AGEEDS(0.002)ADLKR;KDS(0.001)NELS(0.999)DS(0.999)AGEEDS(0.001)ADLKR;KDS(0.004)NELS(0.995)DS(0.986)AGEEDS(0.015)ADLKR ;; 110.68 9.73E-05 1571640000 2072470 1942110 724900 1484230 1649430 2617060 3692500 3222650 1522210 4043670 TRUE FALSE FALSE 1927200.555 1788210.131 1005600.693 3455362.449 1442543.109 2294193.746 2768597.445 2488922.945 1654156.388 3031108.712 0.635807138 0.589952489 0.331760022 1.13996652 0.475912693 0.7568827 0.913394308 0.821126255 0.545726513 1 21.53141417 -4.766404522 0.079723682 1.256348444 4.53E-16 0.178019471 0.216156967 137.3183441 2.084085776 9.72023133 25.2152945 1.71E-05 4.766404522 -1.256348444 KDSQNS(ph)SQHSVSSHR ddPTM_HeLa_A485_30min_R1 1 KDSQNSSQHSVSSHR 15 1 A0A087WXD2;H7C5T8;H7C4U7;H7C535;A0A087WT53;Q96QZ7-4;Q96QZ7-3;Q96QZ7-5;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7 A0A087WXD2 MAGI1 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" 1 0 KDS(0.128)QNS(0.436)S(0.436)QHSVSSHR 85.203 0.0015177 15987000 6663 19499 18300 3047.7 16910 12937 10453 14605 15310 5460.1 TRUE FALSE FALSE 8145.161363 21779.23843 25069.93153 3214.188134 15226.38103 13614.36132 8219.631157 11023.10085 18382.57657 4098.997556 1.987110568 5.31330847 6.116112827 0.784140046 3.714659699 3.321388005 2.005278375 2.689218693 4.484651752 1 12.00105541 -5.254760456 24.99857729 2.697023103 4.556290251 0.259775966 1.457581004 747.9465564 2799486.133 0.390769809 0.657319492 5.56E-06 5.254760456 1.859267147 KDSSGSVS(ph)PNTLSQEEGDQICLYHIR ddPTM_HeLa_A485_30min_R1 2 KDSSGSVSPNTLSQEEGDQICLYHIR 26 1 H7C4T3;H7C4L8;G5E9U9;Q9H0J9 H7C4T3 PARP12 Poly [ADP-ribose] polymerase 12 1 0 KDS(0.207)S(0.207)GS(0.207)VS(0.378)PNT(0.002)LSQEEGDQICLYHIR;KDS(0.047)S(0.047)GS(0.047)VS(0.86)PNTLSQEEGDQICLYHIR ; 241.4 1.48E-49 997960000 195945 221785 168897 181073 288720 224000 301110 331060 206801 277080 TRUE FALSE FALSE 239532.2892 247720.8265 231379.0287 190964.5595 259974.023 235728.2936 236775.3887 249867.0159 248304.0638 208009.0553 1.151547412 1.190913665 1.11235075 0.918058876 1.2498207 1.133259768 1.138293659 1.201231435 1.193717569 1 17.66628681 KDSSGSVS(ph)PNTLSQEEGDQICLYHIR ddPTM_HeLa_A486_30min_R1 2 KDSSGSVSPNTLSQEEGDQICLYHIR 26 1 H7C4T3;H7C4L8;G5E9U9;Q9H0J9 H7C4T3 PARP12 Poly [ADP-ribose] polymerase 12 1 0 KDS(0.059)S(0.059)GS(0.038)VS(0.843)PNTLSQEEGDQICLYHIR;KDS(0.087)S(0.087)GS(0.297)VS(0.529)PNTLSQEEGDQICLYHIR ; 236.29 2.16E-49 967930000 200160 218747 161191 83824 277100 237745 308849 304548 171339 265423 TRUE FALSE FALSE 186129.8176 201412.6911 223608.472 195146.5082 242343.5341 208414.4391 231571.7135 235209.0686 186190.8025 198959.3532 0.935516801 1.01233085 1.123890224 0.980836061 1.218055499 1.047522701 1.163914688 1.182196589 0.93582332 1 17.6021142 -4.492329803 2.862965324 1.091184082 0.935469726 0.206950516 0.088160384 0.408752682 6.035907186 0.022006434 0.113817842 3.22E-05 4.492329803 -0.155714355 KDTDDIES(ph)PKR ddPTM_HeLa_A485_30min_R1 6 KDTDDIESPKR 11 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;G5EA03;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;D6R8Y0;Q9UPQ0-7;D6RGH8 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 KDTDDIES(1)PKR;KDT(0.003)DDIES(0.997)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR ;;;;; 142.1 5.02E-07 8958630000 4832980 3234810 2244477 9212150 4969960 4823710 8546880 7908740 3578230 11830720 TRUE FALSE FALSE 5908059.727 3613092.89 3074802.443 9715386.428 4475133.332 5076271.997 6720769.266 5969109.115 4296347.94 8881539.232 0.665206736 0.406809315 0.346201527 1.093885437 0.503869117 0.571553181 0.75671222 0.672080476 0.483739116 1 23.0823783 -14 0.273381893 3.66376398 0.58744303 0.243894594 0.201731517 325.614929 3.154225524 491.3516825 0.247035642 1.00E-14 14 -3.07632095 KDTDDIES(ph)PKR ddPTM_HeLa_A486_30min_R1 6 KDTDDIESPKR 11 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;G5EA03;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;D6R8Y0;Q9UPQ0-7;D6RGH8 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 KDTDDIES(1)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR;KDTDDIES(1)PKR ;;;;; 145.7 4.08E-07 10231630000 8976760 7712090 2967760 7263770 6495090 11004710 15345310 13754040 5968310 18617800 TRUE FALSE FALSE 8347535.48 7100955.901 4116956.151 16910423.65 5680415.248 9647060.768 11505751.13 10622545.34 6485647.916 13955781.7 0.598141735 0.508818213 0.295000039 1.211714544 0.407029529 0.691259076 0.82444333 0.761157316 0.464728387 1 23.7343596 -14 0.077440535 2.008051342 0.318530744 0.155271991 0.246213277 520.4974653 2.86112978 93.8966821 9.415771936 1.00E-14 14 -1.689520597 KDTGS(ph)PPASEGPTDGSR ddPTM_HeLa_A486_30min_R1 1 KDTGSPPASEGPTDGSR 17 1 Q969R8 Q969R8 ITFG2 Integrin-alpha FG-GAP repeat-containing protein 2 1 0 KDT(0.173)GS(0.827)PPASEGPTDGSR 78.324 0.0025539 168220000 93463 119010 73930 38626 109690 121340 148020 138750 101080 128930 TRUE FALSE FALSE 86911.72634 109579.2142 102557.6759 89923.28005 95931.65738 106370.3045 110983.8304 107159.6539 109841.6958 96645.08881 0.899287563 1.133831171 1.06117835 0.930448522 0.992618027 1.100628142 1.148364928 1.108795648 1.136547104 1 16.5604088 -6.293289172 7.732892049 1.109008664 1.009865153 0.301372375 0.071475084 0.328763597 69.91710701 0.025135952 0.022423593 5.09E-07 6.293289172 -0.09914351 KDVGRPQPGR ddPTM_HeLa_A485_30min_R1 5 KDVGRPQPGR 10 2 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ;;;; ;;;; 166.69 3.24E-07 1646694000 603414.5 591514 589027 630497 812353 703645 821072 850946 666848 872202 FALSE FALSE TRUE 737641.9738 660686.4168 806932.5988 664939.4546 731472.283 740486.7642 645643.2597 642250.1593 800678.2769 654778.0931 1.126552616 1.009023399 1.232375682 1.015518787 1.117130049 1.13089728 0.986048963 0.980866901 1.222823863 1 19.32064653 -6.739499861 24.9879288 1.045840456 1.103115513 0.095102256 0.087162669 594.9254614 677587.6913 0.03216156 0.02489059 1.82E-07 6.739499861 0.057275057 KDVGRPQPGR ddPTM_HeLa_A486_30min_R1 4 KDVGRPQPGR 10 2 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ;;; ;;; 163.84 4.02E-07 1877039900 873634.2 1025726.8 818715.1 442055.7 1350822.2 980038.8 1140354.5 1116795.5 1006535.4 1178164.8 FALSE FALSE TRUE 812396.954 944444.4727 1135743.513 1029128.01 1181389.484 859131.5772 855025.7427 862525.5441 1093782.699 883144.6655 0.919891141 1.069410833 1.286022049 1.165299469 1.337707773 0.972809564 0.968160457 0.976652612 1.238509093 1 19.75229026 -6.324564304 24.99973245 1.025825482 1.158653924 0.186751749 0.129520046 384.4935751 152271.8329 0.047458449 0.041854422 4.74E-07 6.324564304 0.132828442 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK ddPTM_HeLa_A485_30min_R1 1 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK 33 1 Q3ZCM7;A0A075B736;Q5SQY0 Q3ZCM7 TUBB8 Tubulin beta-8 chain 0 0 244.91 2.05E-69 60985000 10966 11852 10737 10297 20242 18574 23222 24810 12830 21461 FALSE FALSE TRUE 13405.34887 13237.9883 14709.0631 10859.49904 18226.63541 19546.50592 18260.42999 18725.3086 15404.86332 16111.16766 0.832053216 0.821665355 0.912973126 0.674035505 1.131304434 1.213227144 1.133402021 1.162256454 0.956160574 1 13.97577344 -5.777473031 24.9999958 1.114896948 0.818344298 0.711000466 0.089944766 123.4975949 192559.2002 0.027408992 0.031175212 1.67E-06 5.777473031 -0.29655265 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK ddPTM_HeLa_A486_30min_R1 2 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK 33 1 Q3ZCM7;A0A075B736;Q5SQY0 Q3ZCM7 TUBB8 Tubulin beta-8 chain 0 0 ; ; 224.94 4.31E-58 222740000 55156 63095 34034 20897.6 78796 74578 81830 72711 52334 72401 FALSE FALSE TRUE 51289.84923 58095.12241 47212.87626 48650.66891 68912.67094 65377.32461 61355.26849 56156.29257 56870.35326 54271.31835 0.945063632 1.07045718 0.869941577 0.896434256 1.269780669 1.204638594 1.130528433 1.03473242 1.047889659 1 15.72790233 -5.739771386 24.99998594 1.121630488 0.949006305 0.459051782 0.089711733 232.8343521 268637.2277 0.028315267 0.036522109 1.82E-06 5.739771386 -0.172624183 KECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 KECSEAMEVETSVISIDSPQK 21 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KECSEAMEVETSVISIDS(1)PQK;KECSEAMEVETSVISIDS(1)PQK ; 224.83 6.14E-36 1055520000 1213550 713000 526870 1881190 916510 721260 1282240 834180 880770 2558330 TRUE FALSE FALSE 1483500.011 796379.1477 721781.1379 1983954.646 825259.0463 759024.0583 1008278.949 629596.0471 1057532.46 1920585.414 0.772420742 0.414654377 0.375813089 1.032994749 0.429691406 0.395204531 0.524985216 0.327814656 0.550630268 1 20.8731147 -8.060759428 21.13233342 1.000000002 0.527266441 0.316431446 0.20450643 4800.892055 1669765.902 0.19797175 0.051116086 8.69E-09 8.060759428 -0.472733562 KECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_A486_30min_R1 4 KECSEAMEVETSVISIDSPQK 21 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KECSEAMEVETSVISIDS(1)PQK;KECSEAMEVETSVISIDS(1)PQK;KECSEAMEVETSVISIDS(1)PQK;KECSEAMEVETSVISIDS(1)PQK ;;; 230.9 4.13E-36 2002470000 1574570 1554140 644724 1450910 1009340 1805390 2391650 1798820 1256620 2448970 TRUE FALSE FALSE 1464200.774 1430984.286 894378.3991 3377791.805 882739.1655 1582659.338 1793233.874 1389267.954 1365544.833 1835731.972 0.797611414 0.779517004 0.487205329 1.840024501 0.480864951 0.862140749 0.976849508 0.756792372 0.743869396 1 20.807924 -9.389382206 14.06775809 1.000001136 0.863471179 0.013615034 0.359381008 0 0 0.336068741 0.081508642 4.08E-10 9.389382206 -0.136529957 KEDKPEGQS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 KEDKPEGQSPVK 12 2 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 KEDKPEGQS(1)PVK;KEDKPEGQS(1)PVK ; 129.25 1.43E-05 900330000 1129020 611150 264670 1839820 538870 734760 1283580 994790 468470 2126700 TRUE FALSE FALSE 1380166.604 682618.6762 362582.4468 1940324.708 485218.2107 773230.8974 1009332.647 750816.1927 562487.6319 1596552.829 0.864466605 0.427557838 0.227103319 1.21532133 0.303916164 0.484312754 0.632194957 0.470273316 0.352313824 1 20.60652886 -10.83904373 2.601529195 1.17163109 0.549795882 0.18765501 0.278903552 106843335.4 72437592.28 114469034 0.068225661 1.45E-11 10.83904373 -0.621835209 KEDKPEGQS(ph)PVK ddPTM_HeLa_A486_30min_R1 4 KEDKPEGQSPVK 12 2 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 KEDKPEGQS(1)PVK;KEDKPEGQS(1)PVK;KEDKPEGQS(1)PVK;KEDKPEGQS(1)PVK ;;; 126.91 1.70E-05 1805780000 2091750 1538970 411797 1044857 731518 2067590 2445940 1908030 1186049 4463680 TRUE FALSE FALSE 1945129.127 1417016.412 571255.8267 2432479.9 639764.1913 1812511.768 1833939.941 1473613.221 1288856.682 3345945.474 0.581339159 0.423502542 0.170730764 0.726993287 0.191205803 0.541703916 0.548108137 0.440417584 0.385199547 1 21.6739825 -10.93512536 2.555438615 1.380013287 0.443243064 0.513818372 0.161811126 37431094.55 18797315.26 84773426.78 0.038264973 1.16E-11 10.93512536 -0.936770222 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPK 33 2 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2;A8MXE8;Q7Z5J4-4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 KEDLEAEEEYSSLCELLGS(0.042)PEQRPGMQDPLS(0.958)PK;KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK ; 227.23 1.12E-39 286550000 135753 98374 61515 299885 156136 128736 231192 187226 104672 411521 TRUE FALSE FALSE 165950.7865 109877.9836 84271.95835 316266.9582 140590.5516 135476.4179 181795.9405 141308.5299 125678.7103 308936.3882 0.537168145 0.355665398 0.27278094 1.023728412 0.455079288 0.438525286 0.588457519 0.457403321 0.406810965 1 18.23695028 -10.38212798 4.647268667 1.000664434 0.505838176 0.373034379 0.192910646 0.001340672 0.000178247 0.188563152 0.04567422 4.15E-11 10.38212798 -0.494826258 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(ph)PK ddPTM_HeLa_A486_30min_R1 3 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPK 33 2 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2;A8MXE8;Q7Z5J4-4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK;KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK;KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(1)PK ;; 259.74 3.74E-64 390451000 147321 127724 56938 151355 120513 178931 276408 237333 121135 361514 TRUE FALSE FALSE 136994.5587 117602.6851 78985.91845 352362.0891 105397.1358 156856.3125 207247.7949 183297.4568 131635.0793 270988.5413 0.505536352 0.433976597 0.291473278 1.300284091 0.388935766 0.578830056 0.764784348 0.67640298 0.485758839 1 18.04787232 -14 0.121552603 2.141525686 0.440664418 0.16339964 0.267444396 303.6225697 2.379173949 87.31424584 2.514466034 1.00E-14 14 -1.700861268 KEDLVFIFWAPESAPLK ddPTM_HeLa_A485_30min_R1 4 KEDLVFIFWAPESAPLK 17 1 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 0 ;;; ;;; 150.29 5.83E-09 367313000 748680 725816 527025 786354 944560 905840 1201460 1312570 701259 1086400 FALSE FALSE TRUE 915221.2831 810693.8674 721993.4788 829310.5279 850516.2898 953268.3817 944758.256 990660.1495 841995.249 815580.4737 1.122171647 0.994008432 0.88525106 1.016834702 1.042835523 1.168821977 1.158387537 1.214668793 1.032387699 1 19.63746771 -6.041048906 3.37559617 1.130594022 0.996607014 0.284107464 0.080534455 0.27129372 6.286281623 0.027456857 0.028935137 9.10E-07 6.041048906 -0.133987008 KEDLVFIFWAPESAPLK ddPTM_HeLa_A486_30min_R1 4 KEDLVFIFWAPESAPLK 17 1 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 0 ;;; ;;; 161.86 1.17E-10 399345000 404810 395934 245118 250156 543689 439036 554522 534557 380597 511929 FALSE FALSE TRUE 376434.9094 364558.7479 340034.2541 582375.8102 475494.4559 384872.2021 415774.7305 412850.0404 413587.4544 383738.6463 0.980966898 0.95001833 0.886108963 1.517636589 1.239110161 1.002953979 1.083484123 1.075862555 1.077784212 1 18.54976454 KEDLVFIFWAPESAPLKS(ph)K ddPTM_HeLa_A485_30min_R1 2 KEDLVFIFWAPESAPLKSK 19 2 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 1 0 KEDLVFIFWAPES(0.209)APLKS(0.791)K;KEDLVFIFWAPES(0.211)APLKS(0.789)K ; 115.88 1.51E-05 48469000 147054 116211 52995 288802 171368 153173 285085 276479 106046 381150 TRUE FALSE FALSE 179765.655 129800.8655 72600.05581 304578.522 154306.0002 161192.9014 224174.2608 208672.0917 127328.4595 286136.3195 0.62825179 0.45363296 0.253725413 1.064452505 0.539274429 0.563343031 0.783452661 0.729275095 0.444992302 1 18.12634311 -14 0.145527359 2.2840529 0.489139031 0.231020275 0.210472819 209.911537 1.83789942 79.02234923 1.174283487 1.00E-14 14 -1.794913869 KEDLVFIFWAPESAPLKS(ph)K ddPTM_HeLa_A486_30min_R1 2 KEDLVFIFWAPESAPLKSK 19 2 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 1 0 KEDLVFIFWAPES(0.02)APLKS(0.98)K;KEDLVFIFWAPES(0.046)APLKS(0.954)K ; 130.6 1.68E-06 62868000 244300 174970 54850 295570 142190 243240 432820 359530 122928 478010 TRUE FALSE FALSE 227175.8316 161104.74 76089.38893 688101.8973 124355.2043 213231.5219 324523.8581 277672.8675 133583.498 358313.1847 0.634014715 0.449619905 0.212354421 1.920392346 0.347057294 0.595098174 0.905698902 0.7749446 0.37281212 1 18.45086161 KEDLYLKPIQR ddPTM_HeLa_A485_30min_R1 2 KEDLYLKPIQR 11 2 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 91.858 0.0034394 409374000 374436 332731 253355 591437 458859 461069 590316 548722 374436 788458 FALSE FALSE TRUE 457727.9964 371640.9961 347081.5575 623745.7057 413173.3868 485209.8599 464190.1642 414147.0691 449581.8707 591909.9311 0.773306837 0.627867479 0.586375628 1.053784829 0.69803422 0.819735967 0.784224322 0.699679204 0.759544395 1 19.17501814 KEDLYLKPIQR ddPTM_HeLa_A486_30min_R1 2 KEDLYLKPIQR 11 2 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 113.65 0.00034654 719280000 1286090 1299720 609940 749780 1318470 1766040 1942260 1826660 1079960 2194510 FALSE FALSE TRUE 1195941.732 1196725.454 846125.1028 1745525.732 1153095.198 1548163.941 1456286.005 1410769.394 1173571.802 1644990.412 0.727020488 0.727496917 0.514364763 1.061116052 0.700973811 0.94113858 0.885285406 0.857615572 0.713421667 1 20.64964774 -5.254119768 24.99895541 0.869319444 0.663414354 0.422249048 0.119342253 575.3597682 1965043.926 0.031079183 0.05246166 5.57E-06 5.254119768 -0.20590509 KEDS(ph)DEEEDDDS(ph)EEDEEDDEDEDEDEDEIEPAAMK ddPTM_HeLa_A486_30min_R1 5 KEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMK 35 1 P19338;C9J1H7;C9JWL1 P19338 NCL Nucleolin 2 0 KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK;KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK;KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK;KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK;KEDS(1)DEEEDDDS(1)EEDEEDDEDEDEDEDEIEPAAMK ;;;; 447.76 6.22E-263 3763390000 1135947 958215 384682 1305720 852840 1511838 2184114 1826399 843468 2877780 TRUE FALSE FALSE 1056322.981 882282.5536 533641.1725 3039782.147 745868.8548 1325322.799 1637625.576 1410567.818 916580.4854 2157165.157 0.489681088 0.409000929 0.247380768 1.409155965 0.345763444 0.614381701 0.759156326 0.653898851 0.424900468 1 21.04070521 -14 0.184725054 2.534558992 0.531790666 0.126049386 0.309911943 310.3306902 3.010918592 177.5056381 0.912324871 1.00E-14 14 -2.002768326 KEDTAFS(ph)DWS(ph)DEDVPDR ddPTM_HeLa_A486_30min_R1 2 KEDTAFSDWSDEDVPDR 17 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 KEDT(0.109)AFS(0.891)DWS(1)DEDVPDR;KEDT(0.011)AFS(0.989)DWS(1)DEDVPDR ; 115.55 4.53E-05 165042000 364900 380270 174995 116784 230579 342530 351390 315590 273210 473090 TRUE FALSE FALSE 339322.3943 350136.0203 242757.7505 271879.0539 201657.6318 300272.1312 263468.5054 243737.0463 296892.0628 354625.1847 0.956847988 0.987341101 0.684547407 0.766665949 0.568650058 0.846730983 0.742949223 0.687308902 0.8371996 1 18.43593547 -4.753341954 24.99809978 0.750516479 0.972094658 0.350279949 0.110099386 166.7587977 514800.5471 0.02631443 0.067076338 1.76E-05 4.753341954 0.221578179 KEDTDRS(ph)QS(ph)RS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 KEDTDRSQSRSPSR 14 3 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 3 0 KEDT(0.003)DRS(0.996)QS(0.959)RS(0.521)PS(0.521)R;KEDT(0.002)DRS(0.996)QS(0.975)RS(0.584)PS(0.443)R ; 69.763 0.0077804 598420000 412330 238900 266830 262295 359690 559900 525860 419580 401010 612150 TRUE FALSE FALSE 383427.7963 219968.6939 370153.722 610636.0157 314574.3262 490825.2306 394284.266 324050.7934 435769.8697 458863.6556 0.835602889 0.479377025 0.806674744 1.330756987 0.685550757 1.069653752 0.859262357 0.706202789 0.949671791 1 18.80770602 -4.996709043 24.97300967 0.933130639 0.653873849 0.264899226 0.190581623 126.5369414 960170.0038 0.048425522 0.100004528 1.01E-05 4.996709043 -0.27925679 KEEAAAAAAAAAAAAAAAAAAATGPQGLHLLFERPRPPPFLGPS(ph)PPDR ddPTM_HeLa_A486_30min_R1 1 KEEAAAAAAAAAAAAAAAAAAATGPQGLHLLFERPRPPPFLGPSPPDR 48 3 J3KNZ9;Q9HAH7;Q9HAH7-1 J3KNZ9 FBRS Probable fibrosin-1 1 0 KEEAAAAAAAAAAAAAAAAAAAT(0.036)GPQGLHLLFERPRPPPFLGPS(0.964)PPDR 119.06 7.28E-09 141180000 31909 38848 20857 13101 35499 31087 35869 39470 22514 32063 TRUE FALSE FALSE 29672.34388 35769.543 28933.38897 30499.79009 31046.3844 27251.80201 26894.19682 30483.54262 24465.53165 24034.2161 1.234587546 1.488275833 1.203841592 1.269015389 1.291757729 1.133875217 1.118996214 1.268339375 1.017945896 1 14.55280213 -6.583782942 0.273791489 0.975863753 1.416893695 0.548156989 0.091717667 1.82465892 0.355993636 0.156302996 0.285422437 2.61E-07 6.583782942 0.441029942 KEEELQAALAR ddPTM_HeLa_A485_30min_R1 3 KEEELQAALAR 11 1 P35579;Q7Z406;Q7Z406-6;Q7Z406-2;A0A0C4DFM8;Q7Z406-5;Q7Z406-4;P35749-4;P35749-3;P35749;P35749-2 P35579;P35749-4 MYH9;MYH14;MYH11 Myosin-9;Myosin-14;Myosin-11 0 0 ;; ;; 153.38 1.12E-06 531052000 374909 380768 341378 447639 530577 468696 585284 563072 429670 646860 FALSE FALSE TRUE 458306.2136 425295.5054 467667.9281 472092.3851 477750.8909 493236.1978 460233.2921 424977.7091 515900.8278 485609.7066 0.94377482 0.875796961 0.963053089 0.972164227 0.983816601 1.015704981 0.947743189 0.875142534 1.062377504 1 18.88943773 -4.895702589 6.69009711 0.974171202 0.910300261 0.241540906 0.048062498 0.302486345 16.98296832 0.012411075 0.026254335 1.27E-05 4.895702589 -0.063870941 KEEELQAALAR ddPTM_HeLa_A486_30min_R1 2 KEEELQAALAR 11 1 P35579;Q7Z406;Q7Z406-6;Q7Z406-2;A0A0C4DFM8;Q7Z406-5;Q7Z406-4;P35749-4;P35749-3;P35749;P35749-2 P35579;P35749-4 MYH9;MYH14;MYH11 Myosin-9;Myosin-14;Myosin-11 0 0 ; ; 120.87 0.00036119 274690000 317270 331330 221870 142828 430630 361650 398990 401530 279120 397030 FALSE FALSE TRUE 295031.0114 305074.2041 307784.0059 332510.8021 376616.3699 317033.3 299158.4819 310110.3843 303314.3463 297611.1038 0.991330658 1.025076687 1.034181863 1.117266116 1.26546478 1.065260321 1.005199329 1.041998704 1.019163407 1 18.18306883 -9.712568466 8.207700286 0.999997753 1.0661551 0.05682125 0.075599777 0 0 0.08083934 0.01960642 1.94E-10 9.712568466 0.066157347 KEEENADS(ph)DDEGELQDLLSQDWR ddPTM_HeLa_A485_30min_R1 7 KEEENADSDDEGELQDLLSQDWR 23 1 J3QQQ3;Q96NB3 J3QQQ3 ZNF830 Zinc finger protein 830 1 0 KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR ;;;;;; 217.67 3.74E-38 2853045000 296504 261355 218964 393057 350751 304109 453923 454061 238411 532647 TRUE FALSE FALSE 362460.2919 291918.1938 299967.8955 414528.7086 315828.9989 320031.677 356938.6428 342701.8278 286257.9009 399867.9055 0.906450072 0.730036569 0.750167471 1.036664116 0.789833329 0.800343495 0.89264139 0.857037594 0.715881162 1 18.60916397 -10.95153715 2.595909644 1.125598521 0.832173222 0.231896604 0.092246786 27443239.22 15236132.84 20816288.42 0.023103686 1.12E-11 10.95153715 -0.293425299 KEEENADS(ph)DDEGELQDLLSQDWR ddPTM_HeLa_A486_30min_R1 7 KEEENADSDDEGELQDLLSQDWR 23 1 J3QQQ3;Q96NB3 J3QQQ3 ZNF830 Zinc finger protein 830 1 0 KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR ;;;;;; 247.62 2.31E-49 5112310000 283514 272179 169891 140339 276964 311361 369953 357800 234078 395084 TRUE FALSE FALSE 263641.1327 250610.5448 235677.345 326716.2843 242224.5925 272948.4455 277386.8464 276336.7507 254368.0695 296152.3948 0.890221174 0.846221571 0.795797532 1.10320325 0.81790523 0.921648618 0.9366355 0.933089705 0.858909379 1 18.17598023 -9.94323301 0.013611082 1.924810639 3.50E-06 0.115031155 0.081684889 6214.814336 16.5189286 1261.857414 1077.929197 1.14E-10 9.94323301 -1.924807142 KEEIPVQEKT(ph)PK ddPTM_HeLa_A485_30min_R1 2 KEEIPVQEKTPK 12 2 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 KEEIPVQEKT(1)PK;KEEIPVQEKT(1)PK ; 119.46 0.00014786 1849920000 1722930 986900 536858 3506460 1741420 1714020 3420570 2997190 1146270 4830870 TRUE FALSE FALSE 2106189.834 1102309.37 735464.1147 3698009.031 1568038.11 1803763.437 2689737.276 2262124.453 1376315.875 3626623.015 0.580757864 0.303949257 0.202795855 1.019683881 0.432368654 0.497367228 0.741664426 0.623755059 0.37950343 1 21.79019536 -14 0.171554563 2.749380633 0.431202739 0.278380628 0.222338536 181.9792601 1.721450922 109.2150674 0.799898982 1.00E-14 14 -2.318177893 KEEIPVQEKT(ph)PK ddPTM_HeLa_A486_30min_R1 1 KEEIPVQEKTPK 12 2 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 KEEIPVQEKT(1)PK 110.12 0.00041854 1016800000 2180300 1833300 559280 1863700 1311800 2753400 3940700 3410700 1325300 4676400 TRUE FALSE FALSE 2027472.229 1688022.631 775848.194 4338787.786 1147261.812 2413713.503 2954695.18 2634158.065 1440178.071 3505399.002 0.578385578 0.481549356 0.221329496 1.237744344 0.32728423 0.68857026 0.842898391 0.751457413 0.41084569 1 21.74114724 -14 0.061707273 2.171243897 0.126290174 0.142092745 0.277155245 782.1348674 3.50990235 141.75314 22.43433091 1.00E-14 14 -2.044953723 KEEPSQNDIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 KEEPSQNDISPK 12 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KEEPSQNDIS(1)PK;KEEPSQNDIS(1)PK ; 89.866 0.0012888 867150000 259940 195995 139208 482950 335480 269440 434830 439360 220362 767370 TRUE FALSE FALSE 317762.7562 218914.9103 190706.8321 509332.3356 302078.4333 283547.4618 341925.0183 331606.2711 264586.6321 576078.7814 0.551596008 0.380008633 0.331042972 0.884136601 0.524370005 0.492202579 0.593538643 0.575626601 0.459288973 1 19.13590659 -10.83594602 2.406162274 1.187764093 0.534010555 0.495258392 0.14160141 22605385.04 13430023.22 24469453.63 0.036513561 1.46E-11 10.83594602 -0.653753538 KEEPSQNDIS(ph)PK ddPTM_HeLa_A486_30min_R1 3 KEEPSQNDISPK 12 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KEEPSQNDIS(1)PK;KEEPSQNDIS(1)PK;KEEPSQNDIS(1)PK ;; 103.5 0.00040893 1043770000 1184490 1087570 472400 1091070 905490 1426710 1929480 1649820 894370 2616840 TRUE FALSE FALSE 1101463.368 1001386.992 655325.9313 2540066.1 791915.0008 1250697.026 1446703.696 1274192.001 971894.7117 1961566.231 0.561522395 0.510503788 0.334083 1.294917326 0.403715658 0.637601222 0.737524776 0.649578883 0.495468721 1 20.90357462 -11.46195315 2.062267604 4.312537468 0.630666823 0.166969292 0.251002113 11729700.36 771159.2006 181822245.4 0.062796493 3.45E-12 11.46195315 -3.681870645 KEEQLSSYEDKLFDVCGS(ph)QDFESDLDR ddPTM_HeLa_A485_30min_R1 1 KEEQLSSYEDKLFDVCGSQDFESDLDR 27 2 E7EN38;A0A494C1B7;A0A1W2PQ90;Q92878-3;Q92878;Q92878-2 E7EN38 RAD50 DNA repair protein RAD50 1 0 KEEQLSSYEDKLFDVCGS(1)QDFESDLDR 191.82 5.93E-21 72375000 59377 37366 30454 82796 53890 55789 71331 66989 43577 114380 TRUE FALSE FALSE 72585.2088 41735.62866 41720.2019 87318.93583 48524.52238 58710.02577 56090.54913 50559.84272 52322.50419 85867.17101 0.845319672 0.486048721 0.485869063 1.0169071 0.56511146 0.683730756 0.653224608 0.588814586 0.609342355 1 16.38981904 -10.87559574 2.440167493 1.171256645 0.655376799 0.303161896 0.15482036 43833614.96 24551003.78 43391265.95 0.037730462 1.33E-11 10.87559574 -0.515879847 KEEQLSSYEDKLFDVCGS(ph)QDFESDLDR ddPTM_HeLa_A486_30min_R1 1 KEEQLSSYEDKLFDVCGSQDFESDLDR 27 2 E7EN38;A0A494C1B7;A0A1W2PQ90;Q92878-3;Q92878;Q92878-2 E7EN38 RAD50 DNA repair protein RAD50 1 0 KEEQLSSYEDKLFDVCGS(1)QDFESDLDR 234.64 5.81E-50 84612000 68551 86222 44378 47083 74937 101400 107900 106590 66679 104190 TRUE FALSE FALSE 63745.9289 79389.4547 61562.35008 109611.6034 65537.7027 88890.29896 80902.27875 82321.78384 72458.78941 78100.14584 0.816207553 1.016508405 0.788248849 1.403475016 0.839149556 1.138157913 1.035878716 1.054054163 0.927767658 1 16.25303762 KEES(ph)DEEETASK ddPTM_HeLa_A485_30min_R1 4 KEESDEEETASK 12 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KEES(1)DEEETASK;KEES(1)DEEETASK;KEES(0.91)DEEET(0.09)ASK;KEES(0.953)DEEET(0.047)ASK ;;; 263.56 1.05E-53 3494900000 2071320 1388097 821473 4219220 2099760 1955126 3480200 2855110 1491945 5791510 TRUE FALSE FALSE 2532077.988 1550422.869 1125370.047 4449705.305 1890700.522 2057493.374 2736626.839 2154889.796 1791364.677 4347793.142 0.58238235 0.356599962 0.258837072 1.023439975 0.434864415 0.473227062 0.629428942 0.495628409 0.412016998 1 22.05185187 -10.47919018 3.727056864 1.005498499 0.519744159 0.350934512 0.196445267 275469174.9 397972689.9 15560755.85 0.048963818 3.32E-11 10.47919018 -0.48575434 KEES(ph)DEEETASK ddPTM_HeLa_A486_30min_R1 4 KEESDEEETASK 12 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KEES(0.953)DEEET(0.047)ASK;KEES(0.996)DEEET(0.004)ASK;KEES(1)DEEETASK;KEES(1)DEEETASK ;;; 245.66 2.94E-28 2870780000 3366430 2665280 957350 2903390 2207310 4214460 5906150 4682150 2335590 7187640 TRUE FALSE FALSE 3130460.641 2454073.506 1328061.559 6759238.649 1930448.597 3694522.775 4428368.801 3616126.656 2538040.822 5387808.16 0.581026746 0.45548643 0.246493847 1.254543304 0.358299431 0.685719065 0.821923994 0.671168414 0.471071119 1 22.36126705 -14 0.09659349 2.048463831 0.377609798 0.151097784 0.267283039 393.5616628 2.601048688 86.65624821 5.028128578 1.00E-14 14 -1.670854033 KEES(ph)EES(ph)DDDMGFGLFD ddPTM_HeLa_A485_30min_R1 44 KEESEESDDDMGFGLFD 17 1 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 2 0 KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 169.43 2.05E-12 98124020000 10707313 9431656 6697476 19916787 13834315 10810724 19635227 17591447 8763987 26882674 TRUE FALSE FALSE 13089117.84 10534606.12 9175151.078 21004790.64 12456922.02 11376756.79 15440000.35 13277117.04 10522838.8 20181318.11 0.648575963 0.521997922 0.454635868 1.040803704 0.617250169 0.563727143 0.765064019 0.65789147 0.521414842 1 24.26651707 -11.00527241 3.186736796 1.366995947 0.646925106 0.317776612 0.156638891 233709253 147491813 628780997.7 0.039555368 9.88E-12 11.00527241 -0.720070841 KEES(ph)EES(ph)DDDMGFGLFD ddPTM_HeLa_A486_30min_R1 60 KEESEESDDDMGFGLFD 17 1 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 2 0 KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD;KEES(1)EES(1)DDDMGFGLFD ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 225.3 1.41E-34 95161478900 16124939 15718299.2 7245491.8 14957824.5 13497123.3 19011370 25332312 23040235 12439556.1 31890831 TRUE FALSE FALSE 14994664.05 14472723.93 10051140.27 34822571.36 11804188.24 16665940.46 18993899.6 17794476.46 13517826.84 23905159.34 0.627256394 0.605422609 0.420459037 1.456696894 0.493792494 0.697169185 0.794552311 0.744378073 0.565477379 1 24.51081869 -11.51259798 2.080841194 4.282857697 0.718473061 0.091837746 0.271236012 11072108.2 678126.7825 171655771.8 0.06802247 3.07E-12 11.51259798 -3.564384635 KEES(ph)EESDDDMGFGLFD ddPTM_HeLa_A485_30min_R1 8 KEESEESDDDMGFGLFD 17 1 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 1 0 KEES(0.626)EES(0.374)DDDMGFGLFD;KEES(0.5)EES(0.5)DDDMGFGLFD;KEES(0.603)EES(0.397)DDDMGFGLFD;KEES(0.761)EES(0.239)DDDMGFGLFD;KEES(0.715)EES(0.285)DDDMGFGLFD;KEES(0.702)EES(0.298)DDDMGFGLFD;KEES(0.554)EES(0.446)DDDMGFGLFD;KEES(0.676)EES(0.324)DDDMGFGLFD ;;;;;;; 115.31 0.00027104 763691000 679888 607914 473446 1008152 817436 743114 1123774 1077525 589375 1342068 TRUE FALSE FALSE 831126.74 679004.2542 648593.3771 1063224.791 736049.2016 782022.3 883670.5045 813260.3043 707657.1564 1007515.147 0.824927291 0.6739395 0.643755461 1.055294101 0.730558944 0.776189125 0.877079126 0.807194122 0.702378678 1 19.9423701 -11.49348932 2.268927071 3.775171291 0.789351748 0.243475204 0.112123964 6581718.385 528946.5215 94517455.06 0.02853428 3.21E-12 11.49348932 -2.985819543 KEES(ph)EESDDDMGFGLFD ddPTM_HeLa_A486_30min_R1 5 KEESEESDDDMGFGLFD 17 1 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 1 0 KEES(0.954)EES(0.046)DDDMGFGLFD;KEES(0.555)EES(0.445)DDDMGFGLFD;KEES(0.627)EES(0.373)DDDMGFGLFD;KEES(0.604)EES(0.396)DDDMGFGLFD;KEES(0.758)EES(0.242)DDDMGFGLFD ;;;; 233.79 1.22E-35 8576879000 588699 548209 283319 324196 509529 568789 768466 733482 431471 933552 TRUE FALSE FALSE 547434.2401 504766.9223 393027.7043 754744.672 445619.1217 498617.5962 576187.6788 566484.1604 468871.2537 699784.5028 0.782289745 0.721317663 0.561641052 1.078538706 0.636794784 0.712530206 0.823378735 0.809512297 0.670022345 1 19.41655119 -10.27656919 3.801121764 1.000430533 0.756817354 0.236025209 0.132141895 128557681.7 166641416.2 604988.3805 0.032953023 5.29E-11 10.27656919 -0.243613179 KEES(ph)PPPPK ddPTM_HeLa_A485_30min_R1 5 KEESPPPPK 9 1 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 0 KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK ;;;; 64.121 0.013713 6631940000 7850990 5764090 4021990 12955400 8340640 6794040 11812900 9621060 6292020 16038600 TRUE FALSE FALSE 9597415.64 6438150.185 5509891.47 13663120.7 7510216.596 7149765.429 9288977.412 7261479.95 7554770.7 12040472.19 0.797096284 0.534709111 0.457614235 1.134766186 0.62374768 0.59381105 0.771479496 0.6030893 0.627448042 1 23.52138864 -10.53244613 3.417130603 1.008056076 0.680897094 0.221392683 0.178519362 251441105.8 326308659.8 18754253.55 0.044466892 2.93E-11 10.53244613 -0.327158982 KEES(ph)PPPPK ddPTM_HeLa_A486_30min_R1 5 KEESPPPPK 9 1 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 0 KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK;KEES(1)PPPPK ;;;; 73.848 0.0072481 6925770000 8127080 6790950 3227060 4723760 5857970 9578510 11874800 10032490 5949580 13270400 TRUE FALSE FALSE 7557413.66 6252810.39 4476664.056 10997152.01 5123208.779 8396810.823 8903599.441 7748311.035 6465294.385 9947405.464 0.759737168 0.628587063 0.450033335 1.105529683 0.515029652 0.844120696 0.89506751 0.778927838 0.649947809 1 23.24588885 -13.99999983 0.08263732 1.79023254 0.506305757 0.164665869 0.180045874 440.1999744 2.558498432 64.00399968 5.527905005 1.00E-14 13.99999983 -1.283926783 KEESDEEET(ph)ASK ddPTM_HeLa_A486_30min_R1 1 KEESDEEETASK 12 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KEES(0.037)DEEET(0.962)AS(0.002)K 266.07 1.25E-33 275390000 223590 210700 98442 213820 191040 309120 401170 322350 179340 529360 TRUE FALSE FALSE 207917.4956 194003.3646 136561.3788 497783.7659 167077.9818 270983.9173 300793.0229 248957.9419 194885.3356 396804.8104 0.523979272 0.488913843 0.344152528 1.254480169 0.421058358 0.6829149 0.758037743 0.627406562 0.491136525 1 18.59806999 -11.65385784 2.038831635 9.009800985 0.628035407 0.180335421 0.241805431 6037945.822 280329.0847 223937470.3 0.060434814 2.22E-12 11.65385784 -8.381765578 KEESEES(ph)DDDMGFGLFD ddPTM_HeLa_A485_30min_R1 21 KEESEESDDDMGFGLFD 17 1 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 1 0 KEES(0.022)EES(0.978)DDDMGFGLFD;KEES(0.03)EES(0.97)DDDMGFGLFD;KEES(0.328)EES(0.672)DDDMGFGLFD;KEES(0.44)EES(0.56)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEES(0.245)EES(0.755)DDDMGFGLFD;KEES(0.043)EES(0.957)DDDMGFGLFD;KEES(0.313)EES(0.687)DDDMGFGLFD;KEES(0.147)EES(0.853)DDDMGFGLFD;KEES(0.039)EES(0.961)DDDMGFGLFD;KEES(0.001)EES(0.999)DDDMGFGLFD;KEES(0.02)EES(0.98)DDDMGFGLFD;KEES(0.191)EES(0.809)DDDMGFGLFD;KEES(0.082)EES(0.918)DDDMGFGLFD;KEES(0.005)EES(0.995)DDDMGFGLFD;KEES(0.014)EES(0.986)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEES(0.374)EES(0.626)DDDMGFGLFD;KEES(0.208)EES(0.792)DDDMGFGLFD;KEES(0.248)EES(0.752)DDDMGFGLFD;KEES(0.007)EES(0.993)DDDMGFGLFD ;;;;;;;;;;;;;;;;;;;; 237.86 7.63E-42 30069222000 18963774 16884553 12762761 27759036 22872718 20188702 31363333 29896497 16425566 37687803 TRUE FALSE FALSE 23182200.1 18859054.6 17484237.4 29275441.85 20595429.88 21245751.22 24662300.69 22564334.23 19722026.43 28292927.3 0.819363788 0.666564276 0.617972019 1.034726507 0.727935631 0.750920928 0.871677237 0.797525615 0.697065603 1 24.75393812 -11.63122763 2.16297271 6.172284059 0.777016973 0.266074689 0.111609112 5264957.164 220343.3958 135081919.5 0.029538032 2.34E-12 11.63122763 -5.395267086 KEESEES(ph)DDDMGFGLFD ddPTM_HeLa_A486_30min_R1 19 KEESEESDDDMGFGLFD 17 1 P05386;P05386-2;P05387;H0YDD8 P05386;P05387 RPLP1;RPLP2 60S acidic ribosomal protein P1;60S acidic ribosomal protein P2 1 0 KEES(0.083)EES(0.917)DDDMGFGLFD;KEES(0.058)EES(0.942)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEES(0.185)EES(0.815)DDDMGFGLFD;KEES(0.004)EES(0.996)DDDMGFGLFD;KEES(0.034)EES(0.966)DDDMGFGLFD;KEES(0.177)EES(0.823)DDDMGFGLFD;KEES(0.203)EES(0.797)DDDMGFGLFD;KEES(0.316)EES(0.684)DDDMGFGLFD;KEES(0.002)EES(0.998)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEES(0.006)EES(0.994)DDDMGFGLFD;KEES(0.068)EES(0.932)DDDMGFGLFD;KEESEES(1)DDDMGFGLFD;KEES(0.111)EES(0.889)DDDMGFGLFD;KEES(0.337)EES(0.663)DDDMGFGLFD;KEES(0.24)EES(0.76)DDDMGFGLFD ;;;;;;;;;;;;;;;;;; 231.37 2.03E-34 27786408000 23361191 21214210 11418180 13421031 20953512 25598059 32430759 30019501 18310225 37809389 TRUE FALSE FALSE 21723692.15 19533118.74 15839605.09 31244838.43 18325327.14 22440030.74 24316240.08 23184715.94 19897370.05 28341671.9 0.766492966 0.689201357 0.558880406 1.102434554 0.64658596 0.791768066 0.857967736 0.81804334 0.702053503 1 24.75642153 -14 0.154583523 1.785132269 0.709463121 0.194543587 0.138874705 227.5242345 2.055699963 55.37690286 0.642565792 1.00E-14 14 -1.075669148 KEETPGT(ph)PK ddPTM_HeLa_A485_30min_R1 3 KEETPGTPK 9 1 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 KEET(0.004)PGT(0.996)PK;KEET(0.001)PGT(0.999)PK;KEETPGT(1)PK ;; 89.43 0.003584 2790280000 4505490 2580110 1040120 5566720 1949250 2719560 3608580 4204440 2188100 12358670 TRUE FALSE FALSE 5507720.707 2881831.421 1424903.671 5870815.818 1755175.826 2861951.956 2837577.404 3173294.498 2627231.6 9277881.013 0.593639938 0.310613104 0.153580723 0.632775502 0.189178523 0.308470431 0.305843263 0.342027936 0.283171513 1 23.14536391 -10.19517082 4.027285601 1.000367167 0.341188008 0.642477844 0.14617789 214037733.9 402825057.6 1031836.112 0.034932976 6.38E-11 10.19517082 -0.659179158 KEETPGT(ph)PK ddPTM_HeLa_A486_30min_R1 4 KEETPGTPK 9 1 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 KEET(0.011)PGT(0.989)PK;KEET(0.056)PGT(0.944)PK;KEET(0.029)PGT(0.971)PK;KEET(0.095)PGT(0.905)PK ;;; 91.62 0.0028551 4555390000 10215496 7637309 3301139 3952446 5960263 9749680 10709700 7306871 7312651 16713750 TRUE FALSE FALSE 9499442.483 7032100.82 4579428.428 9201494.034 5212671.237 8546863.609 8030019.784 5643255.981 7946517.477 12528518.21 0.75822554 0.561287512 0.365520355 0.734443921 0.416064466 0.682192695 0.640939307 0.450432835 0.634274329 1 23.57871246 -8.034723231 22.19470061 1.000000005 0.572264844 0.499839071 0.126407725 932.1960257 595849.4798 0.116469247 0.030072216 9.23E-09 8.034723231 -0.42773516 KEFAPS(ph)DEELDSYR ddPTM_HeLa_A485_30min_R1 1 KEFAPSDEELDSYR 14 1 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 KEFAPS(1)DEELDSYR 100.67 0.00038196 128330000 71785 74984 63926 79868 93641 87047 92107 92958 70698 106470 TRUE FALSE FALSE 87753.32559 83752.72653 87574.88758 84230.9866 84317.77325 91604.64632 72427.587 70159.90475 84886.44012 79928.98844 1.097891107 1.04783919 1.09565865 1.053822753 1.054908549 1.146075387 0.906149176 0.877777964 1.062023201 1 16.28643121 -6.76742186 24.99849322 0.951302408 1.079128004 0.541939298 0.054211101 106.9833172 447037.2094 0.02177752 0.015114668 1.71E-07 6.76742186 0.127825596 KEFAPS(ph)DEELDSYR ddPTM_HeLa_A486_30min_R1 1 KEFAPSDEELDSYR 14 1 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 KEFAPS(1)DEELDSYR 114.75 0.00011106 187520000 169790 176910 129060 63035 193450 201100 215250 208080 153420 200600 TRUE FALSE FALSE 157888.5978 162891.0073 179035.4883 146748.6656 169185.6972 176290.3266 161392.1733 160704.7264 166718.5691 150368.4543 1.050011444 1.083279123 1.190645266 0.975927207 1.125140894 1.172389032 1.073311381 1.068739631 1.108733676 1 17.19814241 -10.63661108 0.732623937 0.948316436 1.095412883 0.190933013 0.05809987 291.1276413 48.16212787 27.46505033 0.0203113 2.31E-11 10.63661108 0.147096448 KEFS(ph)PFGTITSAK ddPTM_HeLa_A485_30min_R1 2 KEFSPFGTITSAK 13 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;H0YAP2;H0YB86 P11940 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1 0 KEFS(1)PFGTITSAK;KEFS(1)PFGTITSAK ; 114.29 0.00013388 415160000 561890 524210 338190 675350 725720 595140 856750 993320 487880 958740 TRUE FALSE FALSE 686880.492 585511.7995 463300.5543 712242.6604 653464.7686 626300.6101 673698.3635 749706.7125 585793.0409 719743.7623 0.954340319 0.813500346 0.643702076 0.989578094 0.90791307 0.87017164 0.93602529 1.041630024 0.813891098 1 19.45712386 -5.301408423 24.9998183 0.934723656 0.804812547 0.300588384 0.093047092 635.9946799 397800.2835 0.026099497 0.038712408 5.00E-06 5.301408423 -0.129911109 KEFS(ph)PFGTITSAK ddPTM_HeLa_A486_30min_R1 1 KEFSPFGTITSAK 13 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;H0YAP2;H0YB86 P11940 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1 0 KEFS(1)PFGTITSAK 142.39 6.49E-08 253680000 551380 488190 261360 256940 500890 586780 696460 734390 416170 729830 TRUE FALSE FALSE 512731.1093 449504.0464 362565.5915 598169.305 438063.7056 514389.0495 522198.3416 567185.4286 452243.9507 547075.8176 0.937221301 0.821648539 0.66273372 1.093393796 0.800736738 0.94025185 0.954526456 1.036758362 0.826656811 1 19.06138126 -5.260906678 24.99997644 0.945385223 0.808645932 0.287152067 0.103130493 63.93285863 3000345.079 0.027792466 0.044657447 5.48E-06 5.260906678 -0.136739292 KEGGLGPLNIPLLADVTR ddPTM_HeLa_A485_30min_R1 1 KEGGLGPLNIPLLADVTR 18 1 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 0 0 104.06 0.00013672 11739000 30979 37594 31601 31602 45349 41424 47439 57329 28761 45365 FALSE FALSE TRUE 37870.17167 41990.29128 43291.52493 33328.33724 40833.89433 43592.89659 37303.27011 43268.97286 34533.06889 34056.34038 1.11198594 1.232965457 1.271173721 0.978623565 1.199010048 1.28002293 1.095339948 1.270511522 1.013998231 1 15.05563579 -7.808078044 12.23399647 1.006575075 1.179185795 0.3681837 0.090622517 1.100828386 283.9304728 0.085285416 0.022085736 1.56E-08 7.808078044 0.17261072 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_HeLa_A485_30min_R1 2 KEGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGK 38 2 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(0.999)PT(0.001)AAGK;KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(0.997)PT(0.003)AAGK ; 245.6 4.07E-52 6892400000 735230 453063 333790 1100000 753720 651280 1147420 979290 541920 1417800 TRUE FALSE FALSE 898779.377 506044.7767 457272.8112 1160090.215 678676.9903 685380.0137 902264.3434 739117.592 650678.3732 1064368.553 0.844424964 0.475441308 0.429618867 1.089932817 0.637633448 0.643931101 0.847699174 0.694418855 0.61132807 1 20.02156636 -11.7560605 1.944813688 9.999275748 0.695351794 0.198513458 0.182520617 8460536.808 213383.5301 337726136.6 0.045972454 1.75E-12 11.7560605 -9.303923953 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_HeLa_A486_30min_R1 2 KEGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGK 38 2 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(1)PTAAGK;KEGITGPPADSSKPIGPDDAIDALSSDFT(0.006)CGS(0.99)PT(0.004)AAGK ; 350.53 4.73E-150 7517400000 1437630 1390480 560143 713400 1247440 1848410 2268120 2112520 1134190 2377320 TRUE FALSE FALSE 1336859.561 1280293.301 777045.3707 1660831.253 1090974.443 1620371.967 1700612.386 1631545.312 1232502.502 1782023.598 0.750191839 0.718449128 0.436046622 0.931991728 0.612210997 0.909287604 0.954315301 0.915557635 0.691630854 1 20.76508501 -6.272604066 24.63120496 0.892640459 0.690731024 0.354553141 0.137868489 704.9689496 1555276.811 0.047455208 0.042243775 5.34E-07 6.272604066 -0.201909436 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGKK ddPTM_HeLa_A485_30min_R1 1 KEGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGKK 39 3 P20810-6;P20810-7;P20810-10;P20810-9;A0A0C4DGB5;H0YA91;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(0.777)PT(0.223)AAGKK 191.99 7.75E-22 472410000 296370 166820 79506 384390 257470 270010 544800 502260 157430 511750 TRUE FALSE FALSE 362296.484 186328.1479 108918.5779 405388.2524 231835.3828 284147.3061 428399.0294 379079.9475 189024.757 384180.1431 0.943038027 0.485002026 0.283509129 1.055203554 0.603454882 0.739619971 1.115099354 0.986724469 0.492021153 1 18.55142343 -5.270559048 24.99834443 0.850886193 0.561964949 0.226461959 0.241517162 965.9907852 2647920.525 0.068521535 0.103270949 5.36E-06 5.270559048 -0.288921244 KEGPVAS(ph)PPFMDLEQAVLPAVIPK ddPTM_HeLa_A485_30min_R1 2 KEGPVASPPFMDLEQAVLPAVIPK 24 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 KEGPVAS(1)PPFMDLEQAVLPAVIPK;KEGPVAS(1)PPFMDLEQAVLPAVIPK ; 103.16 0.00035395 62075000 77275 74966 52764 91275 93084 93576 133891 146497 74748 133571 TRUE FALSE FALSE 94464.55715 83732.62158 72283.59929 96261.12213 83816.23012 98475.49466 105284.0941 110568.3811 89749.23797 100274.2079 0.942062362 0.83503648 0.72085934 0.959978883 0.835870279 0.982062055 1.049961862 1.102660229 0.895038115 1 16.61359104 -6.36518158 3.831397405 1.020172829 0.855110699 0.468705812 0.078383742 0.20720223 5.483703876 0.028845682 0.025219625 4.31E-07 6.36518158 -0.16506213 KEGVFAK(ac)EVR ddPTM_HeLa_A486_30min_R1 2 KEGVFAKEVR 10 2 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; KEGVFAK(1)EVR;KEGVFAK(1)EVR 130.1 0.007298 41512000 98173 92065 72784 22766.5 98576 83823 89295 88218 80207 103408 FALSE TRUE FALSE 91291.57967 84769.43411 100967.914 53001.56256 86211.6789 73481.77051 66952.44653 68132.68719 87159.40734 77513.96373 1.177743664 1.093602108 1.302577099 0.68376793 1.112208365 0.947981073 0.863746908 0.878973077 1.124434917 1 16.24216861 -5.238396151 24.99908596 0.943176893 1.181537065 0.436540925 0.128374463 753.374918 817318.7271 0.03334953 0.057714343 5.78E-06 5.238396151 0.238360172 KEIPAS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 KEIPASPSR 9 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 KEIPAS(0.919)PS(0.081)R;KEIPAS(0.824)PS(0.176)R;KEIPAS(0.915)PS(0.085)R;KEIPAS(0.971)PS(0.029)R ;;; 94.191 0.0016907 2597840000 2947780 3720440 3073970 2844030 4101230 3573290 4129040 4630530 3050800 3897530 TRUE FALSE FALSE 3603503.491 4155513.094 4211159.422 2999392.157 3692897.141 3760381.939 3246836.873 3494885.257 3663067.576 2925947.5 1.231568062 1.420228181 1.439246405 1.025101154 1.262120097 1.285184351 1.109670243 1.194445648 1.251925257 1 21.48047245 -7.30360159 0.032674798 2.47E-09 2.375792617 0.353881923 0.112105415 102.8980554 3.325651871 118.7566668 121.0092422 4.97E-08 7.30360159 2.375792615 KEIPAS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 KEIPASPSR 9 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 KEIPAS(0.92)PS(0.08)R;KEIPAS(0.908)PS(0.092)R;KEIPAS(0.959)PS(0.041)R;KEIPAS(0.616)PS(0.384)R ;;; 87.719 0.002312 1699370000 2012750 2017660 1532980 701930 2189240 1878590 2204270 2133970 1770960 2046740 TRUE FALSE FALSE 1871666.619 1857773.273 2126590.911 1634128.514 1914645.105 1646828.666 1652738.332 1648111.615 1924468.239 1534222.982 1.219944324 1.210888701 1.386102891 1.065118 1.247957518 1.073395905 1.0772478 1.074232126 1.254360195 1 20.54907675 -5.650635698 1.409477872 1.10635279 1.257494851 0.312134962 0.094652236 0.514410693 2.116577153 0.033939463 0.052676037 2.24E-06 5.650635698 0.151142061 KEIPASPS(ph)R ddPTM_HeLa_A486_30min_R1 1 KEIPASPSR 9 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 KEIPAS(0.409)PS(0.591)R 63.944 0.013925 963330000 722910 738910 500350 263180 746840 658520 791010 740170 557770 766190 TRUE FALSE FALSE 672237.7421 680356.0805 694098.9198 612696.3404 653164.3632 577278.4977 593090.9315 571649.4488 606117.9527 574331.0369 1.170470859 1.184606154 1.208534582 1.066799983 1.137261128 1.005131989 1.032663905 0.995330936 1.055345983 1 19.131523 -5.775274577 1.01841625 1.014811894 1.190898587 0.790166022 0.035720855 0.22423445 0.498262356 0.015670062 0.02382994 1.68E-06 5.775274577 0.176086693 KEIS(ph)SPARPCSFEEAMK ddPTM_HeLa_A485_30min_R1 1 KEISSPARPCSFEEAMK 17 2 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 KEIS(0.5)S(0.5)PARPCSFEEAMK 154.79 1.16E-08 256540000 197150 176250 129120 229770 227940 226340 309630 290920 159870 305390 TRUE FALSE FALSE 241005.3373 196860.9043 176886.8611 242321.7533 205245.4933 238190.8124 243475.0211 219571.4139 191954.4426 229261.8933 1.051222835 0.858672593 0.771549334 1.056964809 0.895244693 1.038946373 1.06199516 0.957731835 0.837271471 1 17.80663705 -5.278749439 24.98091691 0.979099205 0.890300663 0.148753751 0.092495805 1485.421622 2143674.861 0.02649318 0.039403339 5.26E-06 5.278749439 -0.088798542 KEISS(ph)PARPCSFEEAMK ddPTM_HeLa_A486_30min_R1 1 KEISSPARPCSFEEAMK 17 2 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 KEIS(0.084)S(0.915)PARPCSFEEAMK 130.87 5.54E-06 192250000 216310 198830 97072 81428 176860 223150 269430 250060 140580 295910 TRUE FALSE FALSE 201147.786 183073.9867 134660.8781 189568.4991 154676.5696 195620.0218 202015.7643 193126.7968 152765.5876 221812.2099 0.906838204 0.825355767 0.607094073 0.854635095 0.697331178 0.881917284 0.910751326 0.870677033 0.688715863 1 17.75897926 -6.290987775 24.68850668 0.864850816 0.775602643 0.157955363 0.105918238 1241.563674 1037356.486 0.03708703 0.03271274 5.12E-07 6.290987775 -0.089248173 KEKPELSEPSHLNGPS(ph)SDPEAAFLSR ddPTM_HeLa_A486_30min_R1 1 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 KEKPELSEPSHLNGPS(0.556)S(0.444)DPEAAFLSR 74.769 0.0042115 543980000 150950 146710 96901 40643 185270 144440 181680 174890 141630 171640 TRUE FALSE FALSE 140369.1845 135084.1653 134423.6623 94618.95798 162031.709 126620.4614 136221.7424 135071.3648 153906.6024 128660.2268 1.091006817 1.049929482 1.044795782 0.735417311 1.259376833 0.984146107 1.058771197 1.049829992 1.196225176 1 16.97320661 KEKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_HeLa_A485_30min_R1 5 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 KEKPELSEPSHLNGPS(0.287)S(0.713)DPEAAFLSR;KEKPELSEPSHLNGPS(0.249)S(0.751)DPEAAFLSR;KEKPELSEPSHLNGPS(0.249)S(0.751)DPEAAFLSR;KEKPELSEPSHLNGPS(0.051)S(0.949)DPEAAFLSR;KEKPELSEPSHLNGPS(0.215)S(0.785)DPEAAFLSR ;;;; 256.79 2.10E-62 13758980000 2517686.3 2789402 1828989.4 2532611.7 3523541 3208425 4580080 5579175 2499397 3500992 TRUE FALSE FALSE 3077736.932 3115598.299 2505608.69 2670961.864 3172724.886 3376413.172 3601508.492 4210873.583 3001003.052 2628259.125 1.17101731 1.185422803 0.953333964 1.016247538 1.207158326 1.284657642 1.370301907 1.60215313 1.141821605 1 21.32567609 -6.07148178 2.787586087 1.324281408 1.081001137 0.227095584 0.161278713 0.334929277 5.116873073 0.056265301 0.058552265 8.48E-07 6.07148178 -0.243280271 KEKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_HeLa_A486_30min_R1 5 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 KEKPELSEPSHLNGPS(0.008)S(0.992)DPEAAFLSR;KEKPELSEPSHLNGPS(0.041)S(0.959)DPEAAFLSR;KEKPELSEPSHLNGPS(0.024)S(0.976)DPEAAFLSR;KEKPELSEPSHLNGPS(0.037)S(0.963)DPEAAFLSR;KEKPELSEPSHLNGPS(0.052)S(0.948)DPEAAFLSR ;;;; 295.08 2.12E-90 19381750000 6230600 5594830 3356150 994788 6424300 5392680 7247970 7155460 4601170 5696020 TRUE FALSE FALSE 5793867.115 5151475.295 4655741.161 2315916.738 5618504.39 4727385.97 5434451.245 5526317.961 5000003.12 4269699.517 1.356973036 1.206519399 1.090414242 0.542407429 1.315901591 1.107194066 1.272794777 1.294310744 1.171043325 1 22.02570311 KEKT(ph)PAT(ph)TPEAR ddPTM_HeLa_A485_30min_R1 1 KEKTPATTPEAR 12 2 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 2 0 KEKT(1)PAT(0.835)T(0.165)PEAR 79.346 0.01093 154730000 97494 108640 91982 159890 140510 115640 171340 182890 98750 237090 TRUE FALSE FALSE 119181.2039 121344.503 126009.9695 168624.3858 126520.331 121694.7316 134731.8093 138035.9407 118568.2192 177987.8263 0.669603121 0.681757317 0.707969596 0.947392804 0.710836992 0.683725028 0.756972047 0.775535853 0.666159151 1 17.44141904 -10.59056913 3.143315926 1.013569186 0.737177805 0.50287423 0.079460099 41983347.85 46652618.61 4715894.59 0.020705936 2.57E-11 10.59056913 -0.276391381 KEKT(ph)PATT(ph)PEAR ddPTM_HeLa_A485_30min_R1 1 KEKTPATTPEAR 12 2 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 2 0 KEKT(1)PAT(0.462)T(0.539)PEAR 80.638 0.0096343 156430000 121230 153140 153900 219150 209390 160160 206930 231610 146710 263350 TRUE FALSE FALSE 148197.1953 171048.3909 210834.0143 231121.6096 188542.3964 168545.7299 162717.715 174807.2843 176153.3513 197701.6916 0.749600037 0.865184256 1.066424939 1.169042145 0.953671134 0.852525482 0.82304665 0.884197211 0.891005787 1 17.59296569 -6.160775603 5.963138946 0.879069086 0.974170919 0.080808426 0.112958282 0.543291028 26.81815894 0.041165237 0.041202053 6.91E-07 6.160775603 0.095101832 KEKT(ph)PELPEPSVK ddPTM_HeLa_A485_30min_R1 3 KEKTPELPEPSVK 13 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KEKT(1)PELPEPSVK;KEKT(1)PELPEPSVK;KEKT(1)PELPEPSVK ;; 185.33 3.17E-17 7433400000 4581090 2441180 1444200 11188200 4442560 4164280 9269200 7400960 3041820 14980400 TRUE FALSE FALSE 5600137.666 2726654.766 1978469.678 11799383.04 4000243.128 4382315.262 7288759.698 5585862.956 3652285.373 11246061.97 0.497964326 0.242454183 0.175925554 1.049201317 0.355701679 0.389675539 0.648116622 0.496695018 0.32476127 1 23.42291657 -11.1351351 2.241131817 2.06926768 0.467625183 0.320343998 0.233960956 17564396.59 4341033.084 95474145.87 0.061769441 7.33E-12 11.1351351 -1.601642498 KEKT(ph)PELPEPSVK ddPTM_HeLa_A486_30min_R1 4 KEKTPELPEPSVK 13 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KEKT(1)PELPEPSVK;KEKT(1)PELPEPSVK;KEKT(1)PELPEPSVK;KEKT(1)PELPEPSVK ;;; 185.33 3.17E-17 8599050000 2910970 2404290 669646 2734840 1935090 3645940 5843910 4740560 1679380 7274950 TRUE FALSE FALSE 2706926.035 2213765.304 928950.8649 6366845.731 1692372.968 3196140.992 4381701.907 3661237.974 1824950.011 5453255.168 0.496387195 0.405953002 0.170347955 1.167531233 0.31034179 0.586097825 0.803502087 0.67138578 0.334653332 1 22.37868623 -14 0.121403627 2.301721048 0.36496763 0.18880851 0.272560828 267.8785174 2.097337622 87.59561485 2.533044358 1.00E-14 14 -1.936753418 KELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_A485_30min_R1 1 KELEEVSPETPVVPATTQR 19 1 Q15149 Q15149 PLEC Plectin 1 0 KELEEVS(1)PETPVVPATTQR 78.428 0.0017889 175370000 78551 71765 51439 89475 94150 69781 87496 81197 68851 130990 TRUE FALSE FALSE 96024.39895 80157.29248 70468.42666 94362.79269 84776.09542 73434.62526 68801.76482 61283.30844 82668.76416 98336.60369 0.976486835 0.815131797 0.716604235 0.959589707 0.862101112 0.746767963 0.699655695 0.62319936 0.840671338 1 16.58544091 -6.259845964 23.20980299 0.753358628 0.860059274 0.090141431 0.115925853 99.09090274 1443370.63 0.038577875 0.036622152 5.50E-07 6.259845964 0.106700646 KELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A485_30min_R1 1 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 34 2 Q01105-2 Q01105-2 SET Protein SET 1 0 KELNS(0.007)NHDGADET(0.497)S(0.497)EKEQQEAIEHIDEVQNEIDR 50.583 0.016267 1205200000 29501 27318 20223 34024 32912 25816 41407 35200 24191 49059 TRUE FALSE FALSE 36063.39567 30512.60246 27704.32925 35882.64497 29635.16572 27167.68584 32560.05619 26567.14481 29045.91181 36829.49416 0.979198778 0.8284828 0.752232141 0.974291007 0.804658505 0.737661118 0.884075574 0.721355137 0.788658994 1 15.16857396 KELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_A485_30min_R1 2 KELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 34 2 Q01105-2 Q01105-2 SET Protein SET 1 0 KELNSNHDGADET(0.192)S(0.808)EKEQQEAIEHIDEVQNEIDR;KELNSNHDGADET(0.059)S(0.941)EKEQQEAIEHIDEVQNEIDR ; 195.42 4.28E-22 823600000 202430 180590 124285 216024 212776 173911 280380 228732 152123 333169 TRUE FALSE FALSE 247459.8551 201708.4296 170263.1934 227824.8441 191591.2743 183016.711 220474.5225 172635.1184 182652.6907 250116.0998 0.989379953 0.806459199 0.68073664 0.910876366 0.766009363 0.731727031 0.881488727 0.690219936 0.730271625 1 17.9322384 -4.270608823 5.054329716 0.788460336 0.997772276 0.245326792 0.098396131 0.19747096 16.08492755 0.023043368 0.142544831 5.36E-05 4.270608823 0.20931194 KELQAEATVSGS(ph)PEAPGTNVVSEPR ddPTM_HeLa_A485_30min_R1 2 KELQAEATVSGSPEAPGTNVVSEPR 25 1 K7EJ02;Q9BZV1-2;Q9BZV1 K7EJ02 UBXN6 UBX domain-containing protein 6 1 0 KELQAEATVS(0.083)GS(0.916)PEAPGTNVVSEPR;KELQAEATVS(0.098)GS(0.902)PEAPGTNVVSEPR ; 174.6 1.31E-14 680080000 244573 288590 264450 254801 350250 319930 383500 418230 244790 341940 TRUE FALSE FALSE 298977.4201 322338.0901 362281.0597 268720.1334 315377.8802 336681.0401 301562.0921 315658.4367 293917.1077 256700.6509 1.164692879 1.255696427 1.411297783 1.046822953 1.228582316 1.311570652 1.174761696 1.229675249 1.144979986 1 17.96972743 -8.181754013 1.391503749 0.999706077 1.232927151 0.375395545 0.090167944 0.75479648 2.875741338 0.085794784 0.025517597 6.58E-09 8.181754013 0.233221074 KELQAEATVSGS(ph)PEAPGTNVVSEPR ddPTM_HeLa_A486_30min_R1 3 KELQAEATVSGSPEAPGTNVVSEPR 25 1 K7EJ02;Q9BZV1-2;Q9BZV1 K7EJ02 UBXN6 UBX domain-containing protein 6 1 0 KELQAEATVS(0.14)GS(0.86)PEAPGTNVVSEPR;KELQAEATVS(0.016)GS(0.984)PEAPGTNVVSEPR;KELQAEATVS(0.1)GS(0.9)PEAPGTNVVSEPR ;; 208.29 6.73E-29 1209820000 722360 826810 553665 326275 908340 834090 890880 921770 685200 917170 TRUE FALSE FALSE 671726.2943 761290.5644 768058.9157 759584.689 794407.5273 731188.4562 667972.4012 711903.0931 744593.6877 687504.6622 0.977049802 1.107324221 1.117169029 1.104842964 1.155494022 1.063539633 0.971589631 1.035488386 1.083038019 1 19.39100997 -6.525785671 24.9355891 1.024354687 1.096700501 0.297847544 0.050315093 111.5062 956478.5046 0.019374238 0.015085781 2.98E-07 6.525785671 0.072345814 KELS(ph)PAGSISK ddPTM_HeLa_A485_30min_R1 2 KELSPAGSISK 11 1 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 KELS(1)PAGSISK;KELS(1)PAGSISK ; 167.29 2.80E-08 1852790000 3228500 2694000 1808380 4755300 3922000 3600400 5496000 5498500 2906300 6067600 TRUE FALSE FALSE 3946668.687 3009039.865 2477375.015 5015069.998 3531511.909 3788911.377 4321734.702 4149984.254 3489567.752 4555058.986 0.866436351 0.660592953 0.543873312 1.100989035 0.775294441 0.831802923 0.948776891 0.911071463 0.766086183 1 22.11903831 -5.250530208 24.99327293 0.894542026 0.687330094 0.398119366 0.120410672 757.519543 1735499.174 0.032177526 0.055046768 5.62E-06 5.250530208 -0.207211932 KELS(ph)PAGSISK ddPTM_HeLa_A486_30min_R1 3 KELSPAGSISK 11 1 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 KELS(1)PAGSISK;KELS(1)PAGSISK;KELS(1)PAGSISK ;; 161.94 4.13E-08 1913520000 2723610 2595130 1189310 1207880 2319350 2890900 3710800 3380810 2062290 3800290 TRUE FALSE FALSE 2532699.004 2389482.447 1649842.683 2812005.683 2028435.496 2534250.151 2782318.591 2611073.366 2241050.958 2848672.648 0.889080395 0.838805557 0.579161907 0.987128403 0.712063388 0.889624911 0.976707026 0.916592985 0.786700065 1 21.44185841 -6.499807458 22.8088166 0.915923227 0.801275114 0.201532505 0.113320521 421.2396798 416448.6916 0.039185832 0.034266283 3.16E-07 6.499807458 -0.114648113 KELSDIAHR ddPTM_HeLa_A485_30min_R1 4 KELSDIAHR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 169.37 9.45E-06 422187000 836684 1102291 957096 811615 1259244 1168352 1348912 1630184 1006302 1182382 FALSE FALSE TRUE 1022801.469 1231194.344 1311165.638 855951.4723 1133869.246 1229525.104 1060705.932 1230378.818 1208257.581 887635.9275 1.15227588 1.387048795 1.477143497 0.964304672 1.277403506 1.38516825 1.194978593 1.386130034 1.361208513 1 19.75960854 -5.146893837 22.51597462 1.245863868 1.343628449 0.087700856 0.158755672 29.90583252 5821.855675 0.042899835 0.07430515 7.13E-06 5.146893837 0.09776458 KELSDIAHR ddPTM_HeLa_A486_30min_R1 2 KELSDIAHR 9 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 157.78 3.63E-05 396880000 990460 1005630 815120 242485 1322520 978550 1064350 1126990 966410 1103760 FALSE FALSE TRUE 921033.8687 925940.2164 1130756.294 564517.3345 1156637.21 857826.4502 798038.3725 870398.979 1050179.197 827371.3117 1.113204985 1.119135028 1.366685402 0.682302283 1.397966298 1.036809517 0.964546826 1.052005269 1.269296121 1 19.65817541 KENNS(ph)PEHLKDEVSIIQSMGYR ddPTM_HeLa_A485_30min_R1 2 KENNSPEHLKDEVSIIQSMGYR 22 2 P38398;P38398-4;P38398-8;P38398-7;P38398-5;Q5YLB2;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A0U1RRA9;E9PH68;E7EWN5;Q3B891;A0A494C182;H0Y8D8;H0Y881;E7EQW4 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 KENNS(1)PEHLKDEVSIIQSMGYR;KENNS(1)PEHLKDEVSIIQSMGYR ; 98.967 0.00033115 1082120000 219273 185351 115297 281740 264660 210560 310780 309021 149604 349240 TRUE FALSE FALSE 268049.5224 207026.1871 157950.1582 297130.7428 238309.5211 221584.596 244379.3142 233233.1152 179628.1506 262180.8953 1.022383885 0.789631094 0.602447246 1.133304326 0.908950749 0.845159201 0.932101913 0.889588522 0.685130586 1 18.00020304 -10.89316456 2.49905362 1.071093511 0.868449284 0.069481916 0.145292986 72861077.93 38312261.88 30488822.32 0.036765616 1.28E-11 10.89316456 -0.202644227 KENNS(ph)PEHLKDEVSIIQSMGYR ddPTM_HeLa_A486_30min_R1 2 KENNSPEHLKDEVSIIQSMGYR 22 2 P38398;P38398-4;P38398-8;P38398-7;P38398-5;Q5YLB2;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A0U1RRA9;E9PH68;E7EWN5;Q3B891;A0A494C182;H0Y8D8;H0Y881;E7EQW4 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 KENNS(1)PEHLKDEVSIIQSMGYR;KENNS(1)PEHLKDEVSIIQSMGYR ; 226.96 1.41E-36 174614000 377330 322510 162095 166158 308500 372360 477160 441910 244310 457850 TRUE FALSE FALSE 350881.1155 296953.133 224862.5251 386824.2212 269805.0534 326422.0091 357769.5211 341296.7398 265486.9875 343201.3799 1.022376762 0.865244578 0.655191203 1.12710567 0.7861421 0.951109256 1.042447793 0.994450372 0.773560373 1 18.38869583 -6.484800753 24.47702539 0.958527444 0.88764868 0.04713729 0.135867283 1411.704381 907462.4589 0.047359025 0.04175595 3.27E-07 6.484800753 -0.070878764 KENPS(ph)PLFSIK ddPTM_HeLa_A485_30min_R1 2 KENPSPLFSIK 11 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 KENPS(1)PLFSIK;KENPS(1)PLFSIK ; 94.461 0.0012749 505750000 693450 503180 408090 1058060 741130 629860 886090 720840 512300 1344310 TRUE FALSE FALSE 847705.5601 562022.5239 559059.473 1115859.139 667340.4949 662838.4957 696769.6328 544052.8598 615113.9109 1009198.257 0.839979215 0.556900014 0.55396397 1.105688729 0.661258073 0.656797107 0.690418981 0.539094133 0.609507504 1 19.94477819 KENPS(ph)PLFSIK ddPTM_HeLa_A486_30min_R1 2 KENPSPLFSIK 11 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 KENPS(1)PLFSIK;KENPS(1)PLFSIK ; 125.67 3.55E-05 379410000 989400 1038290 424060 477050 844720 1290920 1357220 1219250 856130 1392760 TRUE FALSE FALSE 920048.1693 956012.119 588267.3887 1110596.509 738767.3409 1131659.416 1017629.201 941653.391 930340.0377 1044003.831 0.881268959 0.915717061 0.563472443 1.063785856 0.707628956 1.08396098 0.974737037 0.90196354 0.891127035 1 19.99369557 -6.262171657 24.99999553 0.964504143 0.829921958 0.227120011 0.132503098 112.2615073 3832567.021 0.043992135 0.041112775 5.47E-07 6.262171657 -0.134582185 KENPS(ph)PLFSIKK ddPTM_HeLa_A485_30min_R1 1 KENPSPLFSIKK 12 2 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 KENPS(1)PLFSIKK 118.31 8.26E-05 288060000 277450 233770 125520 297610 325670 364710 490640 581500 218260 472520 TRUE FALSE FALSE 339167.7953 261107.368 171955.0713 313867.6807 293245.1513 383805.6517 385810.7558 438886.2132 262062.78 354729.4601 0.956130893 0.736074664 0.484749903 0.884808611 0.826672674 1.081967231 1.087619719 1.237242075 0.738768018 1 18.43635962 -6.001720281 2.059330277 1.047276425 0.736618321 0.365654088 0.164384814 0.324770754 2.770740413 0.060140673 0.065849035 9.96E-07 6.001720281 -0.310658104 KENPS(ph)PLFSIKK ddPTM_HeLa_A486_30min_R1 1 KENPSPLFSIKK 12 2 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 KENPS(0.992)PLFS(0.008)IKK 120.29 5.64E-05 378920000 477700 376850 143230 257280 367750 442580 621200 611180 288770 733680 TRUE FALSE FALSE 444215.6968 346987.0335 198692.4918 598960.8422 321623.3659 387978.9794 465769.1896 472027.656 313800.8161 549961.7525 0.807721073 0.630929391 0.3612842 1.08909545 0.584810424 0.705465385 0.846911967 0.858291788 0.570586617 1 19.06897176 -13.99999996 0.159177942 2.012635722 0.644179328 0.157788287 0.189964404 245.7355437 2.25159979 78.98897606 0.808849136 1.00E-14 13.99999996 -1.368456394 KEPAITSQNS(ph)PEAR ddPTM_HeLa_A485_30min_R1 4 KEPAITSQNSPEAR 14 1 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 KEPAITSQNS(1)PEAR;KEPAITSQNS(1)PEAR;KEPAITS(0.001)QNS(0.999)PEAR;KEPAITS(0.002)QNS(0.998)PEAR ;;; 205 3.47E-22 5211400000 2314610 2841390 2235400 2339360 2649760 2831180 3038010 3784550 2306730 2973130 TRUE FALSE FALSE 2829487.009 3173665.844 3062367.483 2467153.313 2385940.591 2979416.207 2388914.345 2856383.179 2769669.552 2231983.407 1.267700736 1.42190387 1.372038642 1.105363644 1.068977745 1.334873815 1.070310083 1.279751081 1.240900601 1 21.08989487 -1 0.038686349 0.462680758 2.445494627 0.326768943 0.113090045 1058.721453 3.128966494 44.84658773 140.0440335 0.1 1 1.982813869 KEPAITSQNS(ph)PEAR ddPTM_HeLa_A486_30min_R1 4 KEPAITSQNSPEAR 14 1 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 KEPAITS(0.001)QNS(0.999)PEAR;KEPAITSQNS(1)PEAR;KEPAITSQNS(1)PEAR;KEPAITSQNS(1)PEAR ;;; 212.34 1.03E-22 5174700000 2452770 2891950 1891350 857780 2715920 2574790 2860380 2718100 2243630 3064600 TRUE FALSE FALSE 2280843.489 2662781.35 2623731.372 1996955.19 2375263.989 2257138.588 2144682.67 2099247.966 2438109.655 2297204.213 0.992877985 1.159140025 1.142141111 0.869298071 1.033980338 0.982558963 0.933605579 0.913827318 1.061337795 1 21.13144768 -5.244453366 24.97670344 0.968658179 1.104161746 0.430021466 0.067073621 720.0738659 1058815.066 0.017659973 0.030489812 5.70E-06 5.244453366 0.135503567 KEPIQPET(ph)PQPKPSVQK ddPTM_HeLa_A485_30min_R1 1 KEPIQPETPQPKPSVQK 17 2 A0A5F9ZHU7;P49643 A0A5F9ZHU7 PRIM2 DNA primase large subunit 1 0 KEPIQPET(1)PQPKPSVQK 78.916 0.0040143 502610000 438830 337740 167910 530770 404800 403390 636800 633540 283170 655600 TRUE FALSE FALSE 536446.2196 377235.7551 230026.8963 559764.6211 364496.6907 424510.8766 500742.4778 478163.3216 339999.6216 492170.9854 1.08995905 0.766472966 0.467371916 1.137337709 0.740589554 0.86252723 1.01741568 0.97153903 0.690816061 1 18.90880008 -6.532767848 24.21929372 0.920771034 0.828974638 0.034807159 0.1941004 543.9175924 1332083.105 0.073860324 0.057289776 2.93E-07 6.532767848 -0.091796396 KEPIQPET(ph)PQPKPSVQK ddPTM_HeLa_A486_30min_R1 1 KEPIQPETPQPKPSVQK 17 2 A0A5F9ZHU7;P49643 A0A5F9ZHU7 PRIM2 DNA primase large subunit 1 0 KEPIQPET(1)PQPKPSVQK 126.51 1.71E-05 545930000 629980 617440 240650 274530 542690 749230 906350 833210 473670 905330 TRUE FALSE FALSE 585821.6552 568511.8057 333836.1248 639119.714 474620.7598 656797.6202 679571.6436 643506.2718 514728.097 678629.4753 0.86324228 0.83773521 0.491926945 0.941780069 0.699381293 0.967829492 1.00138834 0.948243917 0.758481787 1 19.37226457 -6.268513282 24.81946983 0.936091435 0.7652022 0.299018259 0.128884665 662.7073476 2325166.096 0.044641509 0.040220097 5.39E-07 6.268513282 -0.170889235 KEPPLT(ph)PVPLKR ddPTM_HeLa_A485_30min_R1 2 KEPPLTPVPLKR 12 2 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 KEPPLT(1)PVPLKR;KEPPLT(1)PVPLKR ; 106.6 0.00052075 1815510000 3518600 3370100 2404930 4031000 4259600 4057300 5321700 5612400 2995100 5233300 TRUE FALSE FALSE 4301300.431 3764203.879 3294613.684 4251203.323 3835499.268 4269733.954 4184675.321 4235950.1 3596189.097 3928734.622 1.094830994 0.958121187 0.838594103 1.082079533 0.97626835 1.086796225 1.065145835 1.078197055 0.915355564 1 21.90563329 KEPPLT(ph)PVPLKR ddPTM_HeLa_A486_30min_R1 2 KEPPLTPVPLKR 12 2 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 KEPPLT(1)PVPLKR;KEPPLT(1)PVPLKR ; 109.35 0.00044088 2516500000 4096200 3992300 1958260 1574110 3870700 4165500 4628500 4396900 3032100 4792500 TRUE FALSE FALSE 3809077.533 3675935.608 2716550.716 3664607.631 3385200.713 3651602.962 3470400.345 3395821.854 3294924.869 3592426.806 1.060307624 1.023245791 0.756188188 1.020092497 0.942315848 1.016472474 0.966032304 0.945272385 0.917186361 1 21.77652733 -4.540780368 24.99999955 0.945343327 1.051042411 0.233438417 0.071224768 279.3323381 390092.7591 0.017791016 0.047086688 2.88E-05 4.540780368 0.105699084 KEPVT(ph)PSALVLMSR ddPTM_HeLa_A486_30min_R1 2 KEPVTPSALVLMSR 14 1 J3KRF8;J3KTD6;Q96GD4-3;Q96GD4-2;Q96GD4;Q96GD4-5 J3KRF8 AURKB Aurora kinase B 1 0 KEPVT(0.996)PS(0.004)ALVLMSR;KEPVT(0.999)PS(0.001)ALVLMSR ; 146.78 6.72E-08 438720000 689480 713460 467090 274576 771810 704050 828810 804850 550390 765000 TRUE FALSE FALSE 641151.0125 656922.8312 647959.7571 639226.8043 675002.393 617191.4693 621432.9717 621603.2248 598098.2484 573439.0207 1.118080544 1.145584461 1.129954073 1.114724986 1.177112768 1.076298346 1.083694952 1.08399185 1.043002354 1 19.12928055 -7.519217574 0.60220248 1.000553499 1.137502447 0.784957144 0.022585932 0.332809214 0.270481214 0.022251524 0.011324529 3.03E-08 7.519217574 0.136948948 KEPVVGGTLS(ph)PLALANK ddPTM_HeLa_A485_30min_R1 2 KEPVVGGTLSPLALANK 17 1 O15534;J3KTM2;J3KRL7;O15534-4 O15534 PER1 Period circadian protein homolog 1 1 0 KEPVVGGTLS(1)PLALANK;KEPVVGGT(0.003)LS(0.997)PLALANK ; 188.49 4.53E-18 664370000 1109510 1055500 696230 1190240 1214770 1155290 1495420 1425430 887410 1583560 TRUE FALSE FALSE 1356316.672 1178931.543 953794.4495 1255259.797 1093823.233 1215779.198 1175911.301 1075841.058 1065505.047 1188807.635 1.140905081 0.991692439 0.802311847 1.055898162 0.920101117 1.022687912 0.989151874 0.904974889 0.896280454 1 20.18108386 -7.251995364 23.55812717 0.925470755 0.983112956 0.073249298 0.086809326 810.5713592 2021984.34 0.041615672 0.023553288 5.60E-08 7.251995364 0.057642202 KEPVVGGTLS(ph)PLALANK ddPTM_HeLa_A486_30min_R1 1 KEPVVGGTLSPLALANK 17 1 O15534;J3KTM2;J3KRL7;O15534-4 O15534 PER1 Period circadian protein homolog 1 1 0 KEPVVGGT(0.001)LS(0.999)PLALANK 194.68 1.21E-18 461750000 648170 593830 278730 241030 516120 658460 724770 710300 522300 798190 TRUE FALSE FALSE 602736.6302 546772.7481 386661.7206 561130.021 451383.417 577225.8999 543424.8802 548580.1957 567573.3845 598318.0287 1.007385038 0.913849695 0.646247818 0.937845751 0.754420551 0.96474763 0.90825423 0.916870576 0.948614879 1 19.19055301 -6.296391888 24.8915167 0.940036682 0.848732723 0.195195687 0.096474583 1072.449604 763744.4864 0.034158177 0.030126043 5.05E-07 6.296391888 -0.09130396 KEQES(ph)DEEEEEEEEDEPSGATTR ddPTM_HeLa_A485_30min_R1 1 KEQESDEEEEEEEEDEPSGATTR 23 1 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 KEQES(1)DEEEEEEEEDEPSGATTR 157.66 1.83E-10 559050000 128340 132130 77772 192730 110640 114260 149630 132870 87099 182590 TRUE FALSE FALSE 156888.7902 147581.4541 106543.0992 203258.3519 99624.29312 120242.4769 117660.3281 100283.4242 104578.9704 137073.6733 1.144558152 1.076657906 0.77726887 1.482840191 0.72679378 0.877210583 0.858372912 0.731602369 0.762939869 1 17.06459198 KEQES(ph)DEEEEEEEEDEPSGATTR ddPTM_HeLa_A486_30min_R1 2 KEQESDEEEEEEEEDEPSGATTR 23 1 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 KEQES(1)DEEEEEEEEDEPSGATTR;KEQES(1)DEEEEEEEEDEPSGATTR ; 255.56 2.87E-61 711830000 285170 270000 121168 103502 162483 270382 289554 261471 208759 463170 TRUE FALSE FALSE 265181.0556 248604.2167 168087.4946 240957.8867 142102.867 237025.0179 217104.5266 201939.7612 226854.3982 347189.2173 0.763794042 0.716048207 0.484138004 0.694024684 0.409295162 0.682696945 0.625320476 0.5816418 0.653402776 1 18.40536262 -8.121332048 7.981640534 0.999999938 0.616137238 0.553404146 0.101864388 5.378032066 354.0811091 0.096639136 0.024994027 7.56E-09 8.121332048 -0.3838627 KEQSEVSVS(ph)PR ddPTM_HeLa_A485_30min_R1 3 KEQSEVSVSPR 11 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 KEQSEVSVS(1)PR;KEQSEVSVS(1)PR;KEQSEVS(0.001)VS(0.999)PR ;; 150.76 3.62E-07 6352240000 4852720 6059710 4908340 5358400 7007020 6471200 7764740 8868400 5182950 7099690 TRUE FALSE FALSE 5932190.822 6768340.372 6724139.219 5651115.824 6309376.486 6810022.026 6105739.867 6693410.995 6223120.524 5329867.943 1.113008969 1.269888944 1.261595839 1.060273141 1.183777263 1.277709335 1.145570572 1.255830551 1.167593755 1 22.34566836 -8.033223821 22.45721636 0.999999998 1.197662605 0.415470657 0.069313474 1180.643103 798040.7385 0.066161781 0.017082898 9.26E-09 8.033223821 0.197662607 KEQSEVSVS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KEQSEVSVSPR 11 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 KEQSEVS(0.001)VS(0.999)PR;KEQSEVS(0.003)VS(0.997)PR;KEQSEVS(0.001)VS(0.999)PR;KEQSEVS(0.01)VS(0.99)PR ;;; 149.6 4.02E-07 5684170000 7919910 7997680 5268920 2884770 8569490 8090180 8665130 8663820 6442530 8995570 TRUE FALSE FALSE 7364765.207 7363914.71 7309186.931 6715890.348 7494624.657 7092095.847 6497022.824 6691257.316 7000973.688 6743020.721 1.092205632 1.092079502 1.083963291 0.995976525 1.111463981 1.05176836 0.963518146 0.99232341 1.038254809 1 22.6849636 -6.590543118 6.427337619 0.998400186 1.073093755 0.541022745 0.033350432 0.170153602 12.54081073 0.013031344 0.010062849 2.57E-07 6.590543118 0.074693569 KERPISLGIFPLPAGDGLLT(ph)PDAQK ddPTM_HeLa_A485_30min_R1 1 KERPISLGIFPLPAGDGLLTPDAQK 25 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 KERPISLGIFPLPAGDGLLT(1)PDAQK 58.284 0.026019 48520000 28602 26340 22261 35361 34003 31568 40504 46456 24114 43723 TRUE FALSE FALSE 34964.41622 29420.23387 30496.27026 37292.68189 30617.54193 33220.85167 31849.98951 35062.59316 28953.45861 32823.66076 1.065219887 0.896311782 0.929094121 1.136152429 0.932788763 1.01210075 0.970336299 1.068210929 0.882091087 1 15.00244853 KERPISLGIFPLPAGDGLLT(ph)PDAQK ddPTM_HeLa_A486_30min_R1 1 KERPISLGIFPLPAGDGLLTPDAQK 25 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 KERPISLGIFPLPAGDGLLT(1)PDAQK 119.79 9.04E-05 28776000 51943 45734 20034 26060 39141 54055 61618 53713 33329 66116 TRUE FALSE FALSE 48302.06393 42109.87128 27791.70133 60668.997 34231.5708 47386.24369 46200.52467 41483.72245 36217.98456 49560.12326 0.974615492 0.849672449 0.560767397 1.224149437 0.690707943 0.956136518 0.932211658 0.837038323 0.730788831 1 15.59689216 KES(ph)APPSLR ddPTM_HeLa_A485_30min_R1 7 KESAPPSLR 9 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 KES(0.976)APPS(0.024)LR;KES(0.918)APPS(0.082)LR;KES(0.904)APPS(0.096)LR;KES(0.999)APPS(0.001)LR;KES(1)APPSLR;KES(0.604)APPS(0.396)LR;KES(0.998)APPS(0.002)LR ;;;;;; 116.84 0.00036037 3822660000 2322220 2649840 2146220 3876760 3695270 3424390 5098810 5115470 2978820 5437560 TRUE FALSE FALSE 2838789.827 2959715.737 2940196.09 4088537.582 3327355.944 3603685.765 4009407.59 3860892.962 3576641.851 4082076.363 0.695427909 0.725051536 0.720269742 1.001582827 0.815113596 0.882807044 0.982198086 0.945815957 0.876182005 1 21.96087174 -5.245788497 24.05059623 0.92237638 0.714729854 0.751533928 0.05669382 248.6479987 382094.278 0.015411552 0.026558474 5.68E-06 5.245788497 -0.207646526 KES(ph)APPSLR ddPTM_HeLa_A486_30min_R1 6 KESAPPSLR 9 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 KES(0.989)APPS(0.011)LR;KES(0.98)APPS(0.02)LR;KES(1)APPSLR;KES(1)APPSLR;KES(0.998)APPS(0.002)LR;KES(0.983)APPS(0.017)LR ;;;;; 147.72 5.04E-05 3189790000 3013460 2943530 1825630 1191930 3033150 3268300 3979060 4003240 2666410 4256740 TRUE FALSE FALSE 2802232.016 2710273.963 2532562.828 2774873.277 2652704.044 2865090.376 2983457.102 3091789.642 2897536.566 3190824.597 0.878215624 0.849396098 0.793701675 0.869641433 0.831353766 0.897915347 0.935011315 0.968962583 0.908083938 1 21.60549787 -6.582084217 2.002544875 0.953962458 0.842623112 0.738732255 0.030481195 0.168268744 1.368255191 0.01368531 0.010022409 2.62E-07 6.582084217 -0.111339346 KES(ph)APPSLRR ddPTM_HeLa_A486_30min_R1 1 KESAPPSLRR 10 2 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 KES(1)APPSLRR 79.466 0.0035654 65750000 83480 62050 43279 27214 74644 63913 87527 92786 47967 106860 TRUE FALSE FALSE 77628.48309 57132.93202 60037.78785 63355.56732 65281.45349 56028.06388 65626.81883 71660.6533 52124.81818 80101.56046 0.969125728 0.713256167 0.749520827 0.790940488 0.814983542 0.699462826 0.819295136 0.894622438 0.650734117 1 16.28954273 -10.10065072 4.597636455 1.000015549 0.787879566 0.334419159 0.089242133 113875102.7 1.879607021 18744.88158 0.020372536 7.93E-11 10.10065072 -0.212135983 KES(ph)APQVLLPEEEK ddPTM_HeLa_A485_30min_R1 1 KESAPQVLLPEEEK 14 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 KES(1)APQVLLPEEEK 92.993 0.00070022 187930000 318960 227080 146800 500840 293580 277480 462940 428050 244240 611550 TRUE FALSE FALSE 389911.5516 253635.0307 201107.4289 528199.621 264350.1444 292008.4237 364029.0871 323070.0663 293256.7277 459101.8397 0.84929207 0.55245919 0.438045356 1.150506435 0.575798486 0.636042809 0.792915766 0.703700222 0.638761822 1 18.80845469 -10.52964827 2.600971087 1.01782238 0.701824546 0.184709711 0.186397272 15716224.5 14978610.49 1967132.514 0.047418717 2.95E-11 10.52964827 -0.315997834 KES(ph)FGVK ddPTM_HeLa_A486_30min_R1 1 KESFGVK 7 1 Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 KES(1)FGVK 74.944 0.0099656 28431000 120790 102490 40816 69594 100470 162250 205950 222480 93751 236050 TRUE FALSE FALSE 112323.2448 94368.31914 56621.04829 162018.3491 87868.11575 142233.2446 154419.1317 171826.1607 101877.4122 176941.5436 0.634804255 0.533330484 0.319998612 0.915660313 0.496594039 0.803843132 0.872712697 0.971089984 0.575768755 1 17.43291329 -6.025708316 0.93558879 0.860925374 0.52732878 0.34833576 0.177287579 0.633767692 1.206729885 0.09380594 0.110360399 9.43E-07 6.025708316 -0.333596594 KES(ph)KEEETSIDVAGKPNEVTK ddPTM_HeLa_A485_30min_R1 1 KESKEEETSIDVAGKPNEVTK 21 3 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 KES(1)KEEETSIDVAGKPNEVTK 178.91 4.75E-19 2376600000 235760 77945 27509 662540 84479 141070 325230 210850 79011 1464000 TRUE FALSE FALSE 288203.9986 87059.98972 37685.72384 698732.8826 76067.97414 148456.2071 255741.9536 159138.7069 94867.78297 1099051.743 0.262229691 0.079213732 0.034289308 0.635759769 0.069212368 0.135076631 0.232693279 0.144796374 0.08631785 1 20.06782788 -10.62174476 2.991289085 1.059977154 0.187347307 0.685982244 0.165094704 80257532.33 84124123.31 37584126.39 0.041847268 2.39E-11 10.62174476 -0.872629847 KES(ph)KEEETSIDVAGKPNEVTK ddPTM_HeLa_A486_30min_R1 2 KESKEEETSIDVAGKPNEVTK 21 3 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 KES(0.998)KEEET(0.001)S(0.001)IDVAGKPNEVTK;KES(1)KEEETSIDVAGKPNEVTK ; 172.06 7.06E-14 1894700000 343910 282591 61276 385670 210060 675690 717270 548190 307580 1829810 TRUE FALSE FALSE 319803.685 260197.46 85003.70823 897859.2507 183712.3161 592330.2377 537801.4595 423379.1039 334241.2821 1371613.666 0.233158719 0.189701712 0.061973506 0.654600689 0.13393882 0.431849181 0.392093979 0.30867227 0.243684713 1 20.38744275 -14 0.298423641 6.747240008 0.261126302 0.636241844 0.159971386 169.1200664 1.572954791 607.6857399 0.161192505 1.00E-14 14 -6.486113706 KES(ph)KEETPEVTK ddPTM_HeLa_A485_30min_R1 2 KESKEETPEVTK 12 2 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KES(1)KEETPEVTK;KES(0.999)KEET(0.001)PEVTK ; 158.15 1.06E-08 483690000 561890 288320 143287 1241020 469970 436790 984240 781170 277230 1606410 TRUE FALSE FALSE 686880.492 322036.5159 196294.824 1308813.78 423178.1366 459659.649 773949.0835 589586.8327 332867.5181 1205961.551 0.569570806 0.267037134 0.162770383 1.085286491 0.350905165 0.381156139 0.641769286 0.488893557 0.276018351 1 20.20175248 -10.22132057 4.423782767 1.000188005 0.472001179 0.292270947 0.247730811 141086352.6 108662248.3 235585.678 0.059607295 6.01E-11 10.22132057 -0.528186826 KES(ph)KEETPEVTK ddPTM_HeLa_A486_30min_R1 2 KESKEETPEVTK 12 2 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KES(0.999)KEET(0.001)PEVTK;KES(0.999)KEET(0.001)PEVTK ; 120.71 8.06E-05 146040000 141488 111447 32815.4 134402 94219 172048 250366 236406 94712 380640 TRUE FALSE FALSE 131570.4218 102615.5338 45522.40171 312894.6483 82401.17446 150822.467 187721.7787 182581.5145 102921.7124 285325.2664 0.461124328 0.359644048 0.159545638 1.096624397 0.288797328 0.528598357 0.657922031 0.639906577 0.360717134 1 18.12224798 -14 0.174480066 2.873164772 0.406742809 0.263888418 0.245962157 186.6881808 1.777259784 121.8908788 0.825019192 1.00E-14 14 -2.466421962 KES(ph)LSPGKLK ddPTM_HeLa_A485_30min_R1 1 KESLSPGKLK 10 2 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 KES(0.605)LS(0.395)PGKLK 82.55 0.004264 691500000 609370 524980 212350 762710 614160 733440 1303600 1467700 415630 1131700 TRUE FALSE FALSE 744922.2542 586371.8443 290907.1016 804374.916 553012.074 771841.7843 1025075.211 1107744.274 499043.1286 849588.0174 0.876804097 0.690183751 0.34240961 0.946782322 0.65091793 0.90848949 1.206555636 1.30386052 0.587394265 1 19.69640389 -6.448275543 4.052095222 1.051677296 0.696104255 0.303148934 0.23026724 0.270067112 8.411243139 0.085499172 0.072765938 3.56E-07 6.448275543 -0.355573041 KES(ph)PPKPKDPVSAAVPAPGR ddPTM_HeLa_A485_30min_R1 2 KESPPKPKDPVSAAVPAPGR 20 3 Q68EM7-2 Q68EM7-2 ARHGAP17 Rho GTPase-activating protein 17 1 0 KES(1)PPKPKDPVSAAVPAPGR;KES(0.999)PPKPKDPVS(0.001)AAVPAPGR ; 102.21 0.0007386 2693490000 1916360 1138350 586270 3511300 1751130 1824000 3654300 3316100 1199370 4629700 TRUE FALSE FALSE 2342647.671 1271470.13 803155.6697 3703113.428 1576781.349 1919501.82 2873528.952 2502821.276 1440072.558 3475600.993 0.674026643 0.365827416 0.231083968 1.065459883 0.453671567 0.552279109 0.826771818 0.720111797 0.41433771 1 21.72883104 -14 0.126603037 2.273304991 0.421718244 0.211225398 0.232931465 235.8647187 1.899008552 77.4118409 1.937606487 1.00E-14 14 -1.851586747 KES(ph)PPKPKDPVSAAVPAPGR ddPTM_HeLa_A486_30min_R1 1 KESPPKPKDPVSAAVPAPGR 20 3 Q68EM7-2 Q68EM7-2 ARHGAP17 Rho GTPase-activating protein 17 1 0 KES(1)PPKPKDPVSAAVPAPGR 105.79 0.00021352 1113700000 1443800 1212600 331450 1133300 950700 1709600 2564500 2367500 807060 3193100 TRUE FALSE FALSE 1342597.076 1116509.16 459796.3165 2638379.674 831454.3411 1498686.934 1922834.975 1828471.932 877016.6106 2393526.976 0.560928324 0.466470264 0.19209991 1.102297864 0.347376215 0.626141652 0.803347944 0.763923678 0.366411835 1 21.19070664 -14 0.103243074 2.210849422 0.340383363 0.197141214 0.250259544 297.524877 2.071256966 78.57978585 3.778327807 1.00E-14 14 -1.870466059 KES(ph)PTSSSFGK ddPTM_HeLa_A486_30min_R1 1 KESPTSSSFGK 11 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 KES(0.701)PT(0.278)S(0.02)S(0.001)SFGK 86.548 0.0019264 171460000 203290 203980 85076 74214 184610 240550 243200 261160 169770 284350 TRUE FALSE FALSE 189040.4208 187815.8819 118019.7056 172773.9426 161454.4924 210873.3867 182348.7877 201699.5691 184485.8003 213146.9092 0.886902003 0.881156957 0.553701229 0.810586197 0.757479867 0.989333542 0.855507539 0.946293661 0.865533547 1 17.70148861 -6.249061984 24.56248965 0.923237879 0.773051276 0.385238763 0.096501002 688.2452972 1365797.983 0.032555824 0.032314126 5.64E-07 6.249061984 -0.150186603 KES(ph)SSMLATVK ddPTM_HeLa_A485_30min_R1 2 KESSSMLATVK 11 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 KES(0.727)S(0.137)S(0.137)MLATVK;KES(0.692)S(0.13)S(0.177)MLATVK ; 81.373 0.0036898 391520000 343910 273220 193691 488630 346440 324380 497520 554320 269920 549050 TRUE FALSE FALSE 420411.593 305170.7023 265345.3611 515322.6196 311947.2172 341364.0352 391220.7876 418372.1509 324090.4681 412181.9395 1.01996607 0.740378636 0.643757855 1.250230954 0.756819228 0.828187755 0.949145875 1.015018153 0.786280128 1 18.65292177 -13.99998975 0.099201683 1.356891088 0.80941323 0.031189085 0.168314108 732.2470699 4.942285465 54.29238039 2.926058253 1.00E-14 13.99998975 -0.547477858 KES(ph)YSVYVYK ddPTM_HeLa_A485_30min_R1 1 KESYSVYVYK 10 1 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 1 0 KES(0.999)YS(0.001)VYVYK 122.97 0.00020722 0 194170 196710 131170 279220 247100 232380 287520 326050 177640 351410 TRUE FALSE FALSE 237362.4466 219713.5234 179695.2414 294473.0816 222497.8564 244547.0575 226089.0032 246085.7263 213290.7186 263809.9542 0.899747878 0.832847737 0.681154136 1.116231882 0.843402051 0.926981918 0.857014679 0.932814408 0.808501405 1 18.00913948 KESAPPS(ph)LRR ddPTM_HeLa_A485_30min_R1 1 KESAPPSLRR 10 2 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 KES(0.414)APPS(0.586)LRR 49.423 0.035758 62129000 65029 88678 74343 89822 110290 113440 161770 190600 93222 124340 TRUE FALSE FALSE 79494.4767 99048.1207 101845.5694 94728.74842 99309.14035 119379.543 127206.518 143855.0512 111930.8003 93344.32631 0.85162623 1.061104886 1.09107402 1.014831347 1.063901195 1.278915899 1.362766469 1.541122603 1.199117341 1 16.51027471 -6.250125041 3.03682107 1.321656929 1.016416836 0.444317463 0.142560057 0.219629504 4.131073399 0.050751848 0.047574738 5.62E-07 6.250125041 -0.305240093 KESKEEET(ph)SIDVAGKPNEVTK ddPTM_HeLa_A486_30min_R1 1 KESKEEETSIDVAGKPNEVTK 21 3 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 KES(0.061)KEEET(0.913)S(0.027)IDVAGKPNEVTK 115.63 6.28E-05 2845700000 129260 117570 29010 152750 87882 287810 296930 228420 120680 729940 TRUE FALSE FALSE 120199.5415 108253.325 40243.44891 355609.7196 76859.02009 252302.9284 222634.9734 176413.7524 131140.6396 547158.2729 0.219679657 0.197846456 0.073549923 0.649921124 0.140469447 0.461115076 0.406893187 0.32241814 0.239675878 1 19.06159869 -14 0.274873543 5.877431289 0.259123126 0.630034921 0.160576649 141.4515706 1.367472224 392.7906861 0.190064122 1.00E-14 14 -5.618308163 KESKEEETS(ph)IDVAGKPNEVTK ddPTM_HeLa_A485_30min_R1 3 KESKEEETSIDVAGKPNEVTK 21 3 P53985 P53985 SLC16A1 Monocarboxylate transporter 1 1 0 KES(0.001)KEEET(0.029)S(0.97)IDVAGKPNEVTK;KESKEEET(0.028)S(0.972)IDVAGKPNEVTK;KESKEEET(0.019)S(0.981)IDVAGKPNEVTK ;; 217.93 1.78E-35 1554620000 781411 311450 165545 1933800 443848 731386 1553640 1211540 449790 4173930 TRUE FALSE FALSE 955233.1811 347871.3682 226786.9844 2039438.597 399656.9347 769680.24 1221692.122 914407.9154 540058.7273 3133446.066 0.304850685 0.111018783 0.072376221 0.650861242 0.127545497 0.245633792 0.389887713 0.291821814 0.172352967 1 21.57931873 -10.98327596 2.480126384 1.668619872 0.264358561 0.656837604 0.159824751 64588648.42 27861682.88 247338154.4 0.041783152 1.04E-11 10.98327596 -1.40426131 KESLS(ph)PGK ddPTM_HeLa_A485_30min_R1 5 KESLSPGK 8 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 KES(0.039)LS(0.961)PGK;KES(0.002)LS(0.998)PGK;KES(0.012)LS(0.988)PGK;KES(0.006)LS(0.994)PGK;KES(0.097)LS(0.903)PGK ;;;; 112.43 0.00065586 7640699000 3426040 2068400 1248343 5567330 2531540 2353950 3924690 3034910 2234750 6716240 TRUE FALSE FALSE 4188150.778 2310281.387 1710157.024 5871459.141 2279490.989 2477199.182 3086147.92 2290593.564 2683243.827 5042004.971 0.830651854 0.458206884 0.339181939 1.164508796 0.452100107 0.491312324 0.612087441 0.454302123 0.532177942 1 22.26556611 -10.78263665 3.439076929 1.073770922 0.587508466 0.222956705 0.227910442 324681365.7 225694551.4 197115929.7 0.056087056 1.65E-11 10.78263665 -0.486262456 KESLS(ph)PGK ddPTM_HeLa_A486_30min_R1 4 KESLSPGK 8 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 KES(0.005)LS(0.995)PGK;KESLS(1)PGK;KES(0.002)LS(0.998)PGK;KES(0.028)LS(0.972)PGK ;;; 125.54 0.00035792 13864300000 8641900 7935400 3076010 5215340 5115130 10730500 12736100 9967900 6532980 15128000 TRUE FALSE FALSE 8036147.437 7306570.004 4267123.45 12141575.09 4473542.699 9406680.01 9549393.071 7698426.768 7099263.967 11339850.33 0.70866433 0.644326846 0.376294512 1.070699765 0.394497508 0.829524177 0.842109269 0.678882573 0.626045649 1 23.43489826 -14 0.192811794 2.335718361 0.633078258 0.188356441 0.195036873 231.8309926 2.275472528 119.4300792 0.494462336 1.00E-14 14 -1.702640104 KESLS(ph)PGKLK ddPTM_HeLa_A485_30min_R1 1 KESLSPGKLK 10 2 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 KES(0.013)LS(0.987)PGKLK 102.52 0.00058514 1431000000 1075700 783860 353800 1332800 1050900 1259200 2188900 2370100 720580 1794500 TRUE FALSE FALSE 1314985.754 875525.6083 484685.3428 1405607.489 946268.7061 1325129.765 1721223.633 1788829.259 865193.7964 1347164.175 0.976113957 0.64990268 0.359781942 1.043382473 0.702415283 0.983643857 1.277664345 1.327848002 0.642233376 1 20.36149425 -6.385785784 3.929994558 1.093960744 0.735878424 0.269136332 0.246112325 0.300457072 8.059723989 0.091340806 0.079361848 4.11E-07 6.385785784 -0.35808232 KESLS(ph)PGKLK ddPTM_HeLa_A486_30min_R1 3 KESLSPGKLK 10 2 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 KES(0.128)LS(0.872)PGKLK;KES(0.058)LS(0.942)PGKLK;KES(0.113)LS(0.887)PGKLK ;; 103.83 0.00078315 3015610000 1963470 1460960 564625 1404150 1544040 2053140 3163250 2954500 1054050 3843220 TRUE FALSE FALSE 1825840.892 1345188.209 783262.9212 3268932.162 1350372.106 1799844.462 2371771.393 2281824.846 1145415.903 2880852.697 0.633784884 0.46694099 0.271885793 1.13470993 0.468740421 0.624761017 0.823287978 0.792065783 0.397596137 1 21.45806446 -14 0.108878752 2.059196375 0.433403733 0.171725294 0.237377099 308.9500904 2.238687039 75.08244137 3.080936475 1.00E-14 14 -1.625792642 KESPT(ph)SSSFGK ddPTM_HeLa_A485_30min_R1 1 KESPTSSSFGK 11 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 KES(0.134)PT(0.622)S(0.174)S(0.062)S(0.008)FGK 90.476 0.0023621 247750000 152280 133910 99202 201020 185150 162690 201150 232140 136820 280650 TRUE FALSE FALSE 186154.1606 149569.6096 135900.9479 212001.2136 166715.8159 171208.1968 158172.6593 175207.301 164278.519 210689.12 0.883548997 0.709906661 0.645030688 1.006227629 0.791288207 0.812610527 0.75073957 0.831591594 0.779719992 1 17.68475629 -10.18990973 3.702069487 1.000193731 0.799393719 0.293099981 0.092590293 63054474.03 102872050.5 146471.4946 0.023051839 6.46E-11 10.18990973 -0.200800012 KESSVK(ac)TVR ddPTM_HeLa_A485_30min_R1 2 KESSVKTVR 9 2 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ; KESSVK(1)TVR;KESSVK(1)TVR 120.06 0.0087174 120750000 100739 117936 102831 87534 119043 125783 124435 152226 103636 126704 FALSE TRUE FALSE 123148.043 131727.5893 140872.4661 92315.76077 107190.6609 132368.8034 97848.44571 114892.3348 124434.7946 95119.02461 1.294673106 1.384871111 1.481012517 0.970528884 1.126910851 1.391612287 1.028694797 1.207879657 1.30820091 1 16.5374463 -1 0.133334942 1.025967539 2.171239715 0.214928017 0.151965814 135.84764 1.221976783 0.786834337 29.3810434 0.1 1 1.145272176 KESSVK(ac)TVR ddPTM_HeLa_A486_30min_R1 1 KESSVKTVR 9 2 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 KESSVK(1)TVR 118.9 0.009467 50840000 78552 73919 53055 24984 82666 68331 72108 75347 62105 79519 FALSE TRUE FALSE 73045.91044 68061.38923 73599.31686 58164.01462 72297.25945 59901.01596 54065.81572 58192.13291 67488.3114 59606.92482 1.22546014 1.14183695 1.234744404 0.97579291 1.212900341 1.004933842 0.907039172 0.976264639 1.132222667 1 15.86319232 -5.569630813 0.835335954 1.001454612 1.209959992 0.41247026 0.088356433 0.710150557 1.019339935 0.0442246 0.095270843 2.69E-06 5.569630813 0.20850538 KESVS(ph)PEDSEK ddPTM_HeLa_A485_30min_R1 4 KESVSPEDSEK 11 1 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 0 KES(0.001)VS(0.999)PEDSEK;KES(0.003)VS(0.997)PEDSEK;KES(0.001)VS(0.999)PEDSEK;KESVS(1)PEDSEK ;;; 125.41 3.61E-05 1042650000 1481350 1274310 781030 2555720 1783480 1536280 2548200 3106340 1198330 5104120 TRUE FALSE FALSE 1810871.197 1423329.469 1069965.498 2695332.512 1605910.469 1616717.245 2003756.253 2344505.244 1438823.839 3831756.818 0.472595544 0.371456107 0.279236274 0.703419512 0.419105529 0.421925848 0.522934087 0.611861701 0.375499779 1 21.86957457 -14 0.263336884 4.504402659 0.425798658 0.650986623 0.11747333 123.2040241 1.208105315 233.9522971 0.152323385 1.00E-14 14 -4.078604001 KESVS(ph)PEDSEK ddPTM_HeLa_A486_30min_R1 1 KESVSPEDSEK 11 1 P35251-2;P35251;A0A1W2PP02 P35251-2 RFC1 Replication factor C subunit 1 1 0 KESVS(1)PEDSEK 142.45 6.48E-07 318550000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 KESYSIYVYK ddPTM_HeLa_A485_30min_R1 4 KESYSIYVYK 10 1 P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P23527;Q16778 HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;;; ;;; 164.9 4.92E-06 1220320000 2220530 2698890 2070330 2382210 3072160 3160840 3596830 4538900 2315460 3601120 FALSE FALSE TRUE 2714479.238 3014501.708 2836231.221 2512344.1 2766284.963 3326336.695 2828337.887 3425727.658 2780151.583 2703427.058 1.004088211 1.115066782 1.049124374 0.929318249 1.023251194 1.230414812 1.046204624 1.267179615 1.028380468 1 21.366358 -6.153948435 24.99999908 1.126889087 1.025334906 0.19471975 0.090003639 42.56708536 9875.146833 0.028436348 0.028436348 7.02E-07 6.153948435 -0.10155418 KESYSIYVYK ddPTM_HeLa_A486_30min_R1 3 KESYSIYVYK 10 1 P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P23527;Q16778 HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;; ;; 153.34 0.00010843 594420000 1938970 1835720 1169770 633770 2067960 1810870 2071930 1947500 1658450 2269860 FALSE FALSE TRUE 1803058.216 1690250.862 1622736.272 1475448.589 1808577.174 1587463.271 1553511.199 1504096.764 1802205.781 1701472.282 1.059704725 0.993404876 0.953724776 0.867159933 1.062948361 0.932993907 0.913039381 0.883997218 1.059203727 1 20.69835222 -4.396681731 2.497479284 0.953091238 1.0678698 0.186782913 0.063043972 0.607287167 5.756884049 0.016223709 0.129340754 4.01E-05 4.396681731 0.114778562 KESYSVYVYK ddPTM_HeLa_A485_30min_R1 4 KESYSVYVYK 10 1 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 ;;; ;;; 150.06 9.82E-06 4086210000 4133500 4805400 3464590 4218320 5165940 5656110 6388850 7556500 3786890 5948090 FALSE FALSE TRUE 5052982.815 5367349.729 4746286.015 4448756.14 4651600.875 5952255.174 5023820.005 5703256.527 4546884.088 4465340.629 1.131600752 1.202002305 1.062916899 0.996285952 1.041712438 1.332990172 1.125069826 1.277227652 1.018261419 1 22.0903388 KESYSVYVYK ddPTM_HeLa_A486_30min_R1 3 KESYSVYVYK 10 1 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 ;; ;; 155.48 3.49E-05 555720000 2524270 2333580 1469990 818530 2543880 2337460 2567940 2638130 2117600 2878440 FALSE FALSE TRUE 2347331.708 2148658.622 2039209.496 1905579.206 2224802.85 2049087.951 1925414.251 2037485.389 2301155.273 2157659.889 1.087906264 0.995828227 0.94510238 0.883169408 1.031118417 0.949680699 0.892362258 0.944303317 1.066505099 1 21.04103604 -4.328754771 2.802652955 0.958768213 1.101830775 0.317762671 0.054072641 0.412753487 4.866098892 0.014040098 0.124877916 4.69E-05 4.328754771 0.143062562 KET(ph)EGKMY(ph)SLR ddPTM_HeLa_A485_30min_R1 1 KETEGKMYSLR 11 2 Q9NQW5 Q9NQW5 PRDM7 Probable histone-lysine N-methyltransferase PRDM7 2 0 KET(0.968)EGKMY(0.961)S(0.07)LR 40.025 0.033302 479380000 128700 340600 311650 30846 453620 327520 291110 548990 257490 86956 TRUE FALSE FALSE 157328.871 380430.2072 426942.3038 32531.03887 408456 344668.4408 228911.9703 414349.3417 309165.8812 65279.46951 2.410081947 5.827715973 6.540223244 0.498334915 6.257036142 5.279890345 3.506645689 6.347314781 4.736035441 1 15.99434171 KET(ph)ERASPIKMDLAPSK ddPTM_HeLa_A486_30min_R1 1 KETERASPIKMDLAPSK 17 3 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KET(0.5)ERAS(0.5)PIKMDLAPSK 56.303 0.016321 126280000 360180 323040 137370 214420 296530 444660 582460 564090 264260 747060 TRUE FALSE FALSE 334933.242 297441.1339 190563.3429 499180.5962 259336.4424 389802.3702 436722.3474 435659.021 287166.2696 559991.3135 0.598104353 0.531153121 0.340296962 0.891407749 0.463107974 0.696086458 0.779873432 0.777974605 0.512804864 1 19.09504492 -13.99999999 0.091933301 2.180785859 0.333589541 0.37085822 0.154987228 219.1800983 1.392069014 50.7718339 3.362706827 1.00E-14 13.99999999 -1.847196318 KET(ph)ES(ph)EAEDNLDDLEK ddPTM_HeLa_A485_30min_R1 3 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK ;; 276.27 1.21E-58 6524400000 2631780 1593640 1039030 6088920 2562970 2220460 5043990 4215350 1604450 7667400 TRUE FALSE FALSE 3217210.381 1780002.335 1423410.435 6421542.282 2307791.708 2336719.852 3966300.331 3181528.803 1926448.398 5756058.288 0.558925956 0.309239804 0.247289093 1.115614533 0.400932651 0.405958337 0.689065352 0.552726995 0.334681878 1 22.45664977 -10.78961022 2.718352821 1.129521417 0.516592075 0.27399079 0.237886557 44898906.96 34285862.74 38550661.55 0.061336298 1.62E-11 10.78961022 -0.612929342 KET(ph)ES(ph)EAEDNLDDLEK ddPTM_HeLa_A486_30min_R1 2 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK ; 251.7 8.76E-43 4771550000 3482540 2806570 926775 3980190 2291150 4562480 7078840 5618230 2320690 9164270 TRUE FALSE FALSE 3238431.93 2584167.172 1285647.1 9266083.468 2003772.603 3999607.605 5307639.36 4339081.674 2521849.278 6869477.143 0.47142335 0.376181057 0.18715356 1.348877546 0.291692157 0.582228825 0.772640952 0.63164657 0.367109348 1 22.71176886 -14 0.161112506 2.476483922 0.461563218 0.144088386 0.312123851 279.8482132 2.578406796 134.5227469 1.307013498 1.00E-14 14 -2.014920704 KET(ph)ESEAEDNLDDLEK ddPTM_HeLa_A485_30min_R1 1 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KET(0.586)ES(0.414)EAEDNLDDLEK 82.482 0.0008977 0 75588 57978 41018 134420 73454 65644 125690 114510 49859 170170 TRUE FALSE FALSE 92402.28982 64758.02276 56192.2651 141763.0242 66140.66185 69081.01834 98835.30471 86426.24296 59865.24397 127749.7507 0.723307007 0.506913105 0.439862033 1.109693157 0.517736132 0.540752666 0.773663386 0.676527684 0.468613392 1 16.96296095 -10.18340568 4.301111 1.0001093 0.642245701 0.24559729 0.189406872 53153704.31 62924010.99 44883.93798 0.045300454 6.56E-11 10.18340568 -0.357863598 KET(ph)ESEAEDNLDDLEK ddPTM_HeLa_A486_30min_R1 7 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KET(0.989)ES(0.011)EAEDNLDDLEK;KET(0.607)ES(0.393)EAEDNLDDLEK;KET(0.974)ES(0.026)EAEDNLDDLEK;KET(0.998)ES(0.002)EAEDNLDDLEK;KET(0.591)ES(0.409)EAEDNLDDLEK;KET(0.578)ES(0.422)EAEDNLDDLEK;KET(0.5)ES(0.5)EAEDNLDDLEK ;;;;;; 252.4 6.37E-44 18080540000 1726682 1445261 623117 1050015 1270853 1769460 2522441 2257871 1137774 3101677 TRUE FALSE FALSE 1605650.508 1330733.255 864404.5901 2444487.985 1111450.767 1551162.016 1891299.582 1743803.062 1236397.166 2324996.891 0.690603293 0.572359155 0.371787418 1.051394088 0.47804398 0.667167351 0.813463274 0.750023826 0.531784439 1 21.14879736 -14 0.204490843 2.536552114 0.61123097 0.234664292 0.181632756 212.6333185 2.111883125 134.1904241 0.407178826 1.00E-14 14 -1.925321144 KET(ph)PPKEVK ddPTM_HeLa_A485_30min_R1 5 KETPPKEVK 9 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK ;;;; 125.54 0.00028827 21288100000 13310770 6163280 3310560 29059700 10502470 10455790 22546900 16936200 7881770 37843000 TRUE FALSE FALSE 16271704.86 6884021.983 4535273.908 30647157.83 9456807.21 11003239 17729570.62 12782570.4 9463568.943 28409436.55 0.572757043 0.242314626 0.159639699 1.078766831 0.332875564 0.3873093 0.624073293 0.449941004 0.333113574 1 24.75986688 -11.07659784 2.385502307 1.814548524 0.465214501 0.301591455 0.244453483 40740345.55 12860781.06 180431155.2 0.061916926 8.38E-12 11.07659784 -1.349334023 KET(ph)PPKEVK ddPTM_HeLa_A486_30min_R1 6 KETPPKEVK 9 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK;KET(1)PPKEVK ;;;;; 114.72 0.00070056 27852720000 11813690 9733990 2425120 9224150 7104440 16178780 22546100 19467000 7994620 25387100 TRUE FALSE FALSE 10985611.34 8962633.182 3364191.411 21474287.36 6213334.889 14182806.62 16904827.31 15034789.06 8687600.099 19030004.92 0.577278429 0.470973771 0.176783528 1.128443606 0.326502012 0.745286545 0.888324905 0.790057025 0.456521169 1 24.1817726 -5.243996684 24.99927568 0.739815707 0.41460813 0.308701861 0.240960582 1087.320256 1558370.54 0.063304071 0.109311727 5.70E-06 5.243996684 -0.325207577 KET(ph)PPKEVKK ddPTM_HeLa_A486_30min_R1 1 KETPPKEVKK 10 3 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KET(1)PPKEVKK 81.494 0.0026592 892480000 1713200 895210 219580 1362800 952700 1256600 2629600 2419500 497440 3252100 TRUE FALSE FALSE 1593113.527 824270.2993 304607.2566 3172667.272 833203.4824 1101573.468 1971646.267 1868632.667 540558.4997 2437752.992 0.653517207 0.338127079 0.12495411 1.301472004 0.341791595 0.451880675 0.808796573 0.76653897 0.221744574 1 21.21712052 -11.41347541 2.352902951 5.100847548 0.563530278 0.140996835 0.327968071 9345010.788 1094121.423 207258616 0.080561816 3.86E-12 11.41347541 -4.53731727 KET(ph)PPPLVPPAAR ddPTM_HeLa_A485_30min_R1 3 KETPPPLVPPAAR 13 1 Q9BQA1;Q9BQA1-2 Q9BQA1 WDR77 Methylosome protein 50 1 0 KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR ;; 106.38 0.00035047 18421600000 2779370 2430650 1780690 4408800 3600370 2805550 4442660 3959480 2322380 5977740 TRUE FALSE FALSE 3397631.268 2714893.374 2439441.332 4649641.58 3241904.521 2952444.26 3493449.398 2988411.322 2788460.364 4487599.43 0.75711554 0.604976762 0.543596052 1.036108871 0.72241397 0.65791172 0.778467297 0.665926487 0.621370157 1 22.09751247 -11.04185297 2.804344046 1.378724824 0.710972404 0.315237626 0.128316965 12386271.76 10054454.94 30356050.94 0.032352721 9.08E-12 11.04185297 -0.66775242 KET(ph)PPPLVPPAAR ddPTM_HeLa_A486_30min_R1 5 KETPPPLVPPAAR 13 1 Q9BQA1;Q9BQA1-2 Q9BQA1 WDR77 Methylosome protein 50 1 0 KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR;KET(1)PPPLVPPAAR ;;;; 86.455 0.0016546 27649380000 3027600 3210280 1566540 1504375 3004770 3754690 4578480 4238390 2590980 4621320 TRUE FALSE FALSE 2815380.875 2955885.721 2173146.241 3502261.027 2627883.728 3291474.523 3432895.878 3273401.12 2815568.233 3464111.392 0.812728159 0.8532883 0.627331513 1.01101282 0.758602548 0.950164169 0.990988883 0.944946842 0.812782244 1 21.72405389 -5.781798566 1.177476744 0.934662334 0.787977211 0.255550015 0.102531474 0.672239426 1.972411432 0.042134757 0.06053833 1.65E-06 5.781798566 -0.146685124 KET(ph)PSAPAK ddPTM_HeLa_A485_30min_R1 2 KETPSAPAK 9 1 P49454 P49454 CENPF Centromere protein F 1 0 KET(0.988)PS(0.012)APAK;KET(0.985)PS(0.015)APAK ; 122.46 0.00029809 1412830000 2264900 1472620 1056960 3543200 2610500 2084500 3339000 2864700 1784970 4817800 TRUE FALSE FALSE 2768719.191 1644830.099 1447973.488 3736756.044 2350589.454 2193641.197 2625595.373 2162127.833 2143197.106 3616811.125 0.7655139 0.454773568 0.400345342 1.033163169 0.649906609 0.606512511 0.725942075 0.597799487 0.592565393 1 21.78628683 -10.61057109 2.806899993 1.02856211 0.645529673 0.289725438 0.165605021 54189837.83 53364257.89 11386741.08 0.044559942 2.45E-11 10.61057109 -0.383032437 KET(ph)PSAPAK ddPTM_HeLa_A486_30min_R1 3 KETPSAPAK 9 1 P49454 P49454 CENPF Centromere protein F 1 0 KET(0.827)PS(0.173)APAK;KET(0.982)PS(0.018)APAK;KET(0.556)PS(0.444)APAK ;; 96.067 0.0022261 1652520000 3777410 3604880 1456510 2053090 3100110 4719260 5485270 5240130 2754870 6072370 TRUE FALSE FALSE 3512633.066 3319216.18 2020509.679 4779697.277 2711265.296 4137045.683 4112797.429 4047066.79 2993664.35 4551809.028 0.771700448 0.729208137 0.443891575 1.050065424 0.595645661 0.908879449 0.903552281 0.889111728 0.65768672 1 22.1180086 -5.263038541 24.99939369 0.846333865 0.656360873 0.278272325 0.153727416 201.401904 3148498.805 0.04126576 0.065103638 5.46E-06 5.263038541 -0.189972992 KET(ph)SFGSSENITMTSLSK ddPTM_HeLa_A486_30min_R1 3 KETSFGSSENITMTSLSK 18 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 KET(0.402)S(0.402)FGS(0.19)S(0.007)ENITMTSLSK;KET(0.412)S(0.412)FGS(0.171)S(0.005)ENITMTSLSK;KET(0.358)S(0.358)FGS(0.225)S(0.058)ENITMTSLSK ;; 159.74 2.15E-11 674290000 820400 789840 425830 357558 817990 837550 974200 959850 605100 1066460 TRUE FALSE FALSE 762894.1965 727250.2019 590722.7801 832413.094 715390.0667 734221.5966 730444.856 741313.1084 657550.5552 799411.4745 0.954319798 0.909732003 0.738947087 1.041282394 0.89489592 0.918452662 0.91372826 0.927323577 0.822543304 1 19.60857876 -10.41511834 3.05159384 1.001580537 0.903177556 0.132371638 0.074967479 105202731.6 126931247.8 1446156.774 0.017951015 3.84E-11 10.41511834 -0.098402981 KET(ph)SPESSLIQDEIAVK ddPTM_HeLa_A485_30min_R1 4 KETSPESSLIQDEIAVK 17 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KET(0.634)S(0.346)PES(0.007)S(0.013)LIQDEIAVK;KET(0.454)S(0.454)PES(0.074)S(0.017)LIQDEIAVK;KET(0.495)S(0.495)PES(0.005)S(0.005)LIQDEIAVK;KET(0.5)S(0.5)PESSLIQDEIAVK ;;; 287.67 2.37E-60 2783900000 1094670 834455 672198 1764060 1125510 1098940 1666610 1537410 944526 2230210 TRUE FALSE FALSE 1338175.565 932037.2535 920872.0127 1860426.131 1013450.272 1156478.799 1310525.159 1160357.787 1134083.704 1674259.691 0.79926404 0.556686193 0.55001743 1.111193288 0.605312472 0.690740394 0.782749036 0.693057232 0.677364277 1 20.67509189 -10.41979955 2.795679552 1.006744002 0.717320854 0.23253383 0.153415322 19307065.37 21603826.79 1033522.366 0.038983641 3.80E-11 10.41979955 -0.289423148 KET(ph)SPESSLIQDEIAVK ddPTM_HeLa_A486_30min_R1 4 KETSPESSLIQDEIAVK 17 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KET(0.492)S(0.492)PES(0.01)S(0.006)LIQDEIAVK;KET(0.493)S(0.493)PES(0.007)S(0.007)LIQDEIAVK;KET(0.498)S(0.498)PES(0.005)SLIQDEIAVK;KET(0.499)S(0.499)PES(0.001)S(0.001)LIQDEIAVK ;;; 238.28 2.40E-42 3960270000 1046780 991470 431119 502746 846990 1138140 1450850 1299660 817570 1548100 TRUE FALSE FALSE 973406.1276 912902.3063 598059.8226 1170418.095 740752.6163 997727.8586 1087831.984 1003755.789 888437.6259 1160445.684 0.83882093 0.786682496 0.515370802 1.008593605 0.638334587 0.859779887 0.937426025 0.864974383 0.765600354 1 20.14624757 -6.496163756 23.71364312 0.883298776 0.758608406 0.192424242 0.131940427 682.8793841 606161.1446 0.045059974 0.039594784 3.19E-07 6.496163756 -0.12469037 KETERAS(ph)PIK ddPTM_HeLa_A485_30min_R1 2 KETERASPIK 10 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KETERAS(1)PIK;KET(0.006)ERAS(0.994)PIK ; 81.904 0.0028734 841680000 1274630 980580 650770 1734410 1214290 1109080 1639220 1454620 979520 2358800 TRUE FALSE FALSE 1558167.046 1095250.301 891516.9038 1829156.427 1093391.024 1167149.714 1288987.256 1097872.164 1176100.679 1770794.57 0.879925358 0.618507827 0.50345586 1.032958005 0.617457859 0.659110737 0.727914619 0.619988441 0.66416551 1 20.75596542 -10.1395021 4.179317243 1.000074223 0.698524882 0.278770093 0.143368034 189832424.7 317834530.5 186520.5884 0.034872558 7.25E-11 10.1395021 -0.30154934 KETERAS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 KETERASPIK 10 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KET(0.228)ERAS(0.772)PIK;KET(0.008)ERAS(0.992)PIK ; 67.234 0.0071364 1714610000 1720560 1495270 827560 727380 1299610 1694910 2094790 1774590 1388900 2114820 TRUE FALSE FALSE 1599957.629 1376779.36 1148013.395 1693377.4 1136600.795 1485809.237 1570651.386 1370554.596 1509290.97 1585255.307 1.009274419 0.868490617 0.724182023 1.068204845 0.716982804 0.937268105 0.990787653 0.864563954 0.952080692 1 20.59628378 -6.483706201 24.99528201 0.943922796 0.873826635 0.099132572 0.107171034 1354.834321 864495.6049 0.036434268 0.032126422 3.28E-07 6.483706201 -0.070096161 KETERAS(ph)PIKMDLAPSK ddPTM_HeLa_A485_30min_R1 3 KETERASPIKMDLAPSK 17 3 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KET(0.069)ERAS(0.931)PIKMDLAPSK;KET(0.143)ERAS(0.857)PIKMDLAPSK;KET(0.003)ERAS(0.997)PIKMDLAPSK ;; 122.3 0.00016455 8252350000 757450 685670 559330 1138250 999320 1004720 1490950 1463020 711850 1643000 TRUE FALSE FALSE 925942.1393 765853.142 766249.4427 1200429.715 899824.192 1057325.586 1172396.353 1104212.051 854711.7655 1233430.337 0.750704852 0.620913171 0.621234471 0.973244843 0.729529804 0.857223593 0.950516877 0.895236656 0.692955037 1 20.23424481 -5.248740145 24.81484962 0.863692808 0.65994705 0.478416669 0.098776002 607.7075652 1187484.234 0.026212005 0.045006006 5.64E-06 5.248740145 -0.203745758 KETERAS(ph)PIKMDLAPSK ddPTM_HeLa_A486_30min_R1 3 KETERASPIKMDLAPSK 17 3 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KET(0.003)ERAS(0.997)PIKMDLAPSK;KET(0.057)ERAS(0.943)PIKMDLAPSK;KETERAS(1)PIKMDLAPSK ;; 156.05 1.13E-07 6684010000 6472180 4755000 1968240 3501640 5176410 6489490 9590590 8848330 3738760 8953920 TRUE FALSE FALSE 6018513.604 4378196.483 2730395.239 8151994.883 4527136.39 5688882.704 7190922.943 6833758.417 4062838.727 6711800.152 0.896706318 0.652313297 0.406805205 1.214576522 0.674504051 0.847594174 1.07138514 1.018170724 0.605327727 1 22.67826833 -5.253752996 24.93987567 0.912763714 0.651978806 0.266682271 0.202609479 805.9099877 2614915.432 0.054642307 0.092424716 5.58E-06 5.253752996 -0.260784908 KETES(ph)EAEDNLDDLEK ddPTM_HeLa_A485_30min_R1 6 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KET(0.02)ES(0.98)EAEDNLDDLEK;KET(0.304)ES(0.696)EAEDNLDDLEK;KET(0.125)ES(0.875)EAEDNLDDLEK;KET(0.019)ES(0.981)EAEDNLDDLEK;KET(0.037)ES(0.963)EAEDNLDDLEK;KET(0.45)ES(0.55)EAEDNLDDLEK ;;;;; 250.42 1.81E-42 44259480000 21143390 13573480 8135250 43236200 20536140 19177580 38254800 32427050 13229140 55649800 TRUE FALSE FALSE 25846664.16 15160780.41 11144817.51 45598084.13 18491489.79 20181688.43 30081349.47 24474265.14 15884107.05 41777329.02 0.618676798 0.362894919 0.266767114 1.091455227 0.442620202 0.483077519 0.720040035 0.585826469 0.380208774 1 25.31621692 -10.40202783 3.273653575 1.004911185 0.553158313 0.271578065 0.220960307 121261999.3 164462454.9 5618596.482 0.05449942 3.96E-11 10.40202783 -0.451752872 KETES(ph)EAEDNLDDLEK ddPTM_HeLa_A486_30min_R1 2 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KET(0.46)ES(0.54)EAEDNLDDLEK;KET(0.45)ES(0.55)EAEDNLDDLEK ; 244.16 7.38E-42 4684310000 5003660 4200400 1488740 3977310 3455870 6345200 9210500 7408480 3444750 11297400 TRUE FALSE FALSE 4652929.273 3867545.006 2065219.998 9259378.682 3022402.56 5562393.737 6905935.481 5721730.83 3743343.704 8468457.506 0.549442359 0.456700055 0.243872039 1.093396132 0.35690119 0.656836706 0.815489182 0.675652068 0.442033712 1 23.01366778 -14 0.103067691 2.185771304 0.349745658 0.223566763 0.230513899 281.6879871 1.958452329 72.8962023 3.52241796 1.00E-14 14 -1.836025646 KETQS(ph)PEQVK ddPTM_HeLa_A485_30min_R1 7 KETQSPEQVK 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KET(0.001)QS(0.999)PEQVK;KET(0.078)QS(0.922)PEQVK;KETQS(1)PEQVK;KET(0.029)QS(0.971)PEQVK;KETQS(1)PEQVK;KET(0.058)QS(0.942)PEQVK;KET(0.099)QS(0.901)PEQVK ;;;;;; 210.73 7.92E-14 9692410000 3477680 2700300 1660872 5454800 3393910 3344120 5547550 4775520 2551200 6744990 TRUE FALSE FALSE 4251277.918 3016076.596 2275297.667 5752781.912 3056000.404 3519212.952 4362270.623 3604316.232 3063202.439 5063588.125 0.839578144 0.59564019 0.449344933 1.136107789 0.60352468 0.695003793 0.861497917 0.711810705 0.604946999 1 22.27172863 -10.67393792 2.788736894 1.034200942 0.721920455 0.176958222 0.179902067 65579100.46 59719714.95 15961433.4 0.04424138 2.12E-11 10.67393792 -0.312280487 KETQS(ph)PEQVK ddPTM_HeLa_A486_30min_R1 8 KETQSPEQVK 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KETQS(1)PEQVK;KET(0.002)QS(0.998)PEQVK;KETQS(1)PEQVK;KET(0.176)QS(0.824)PEQVK;KET(0.003)QS(0.997)PEQVK;KET(0.089)QS(0.911)PEQVK;KET(0.005)QS(0.995)PEQVK;KET(0.036)QS(0.964)PEQVK ;;;;;;; 218.02 1.88E-16 32710980000 5812150 5133580 1963870 2649320 4054410 6075320 7570800 6574470 3785040 8514870 TRUE FALSE FALSE 5404748.299 4726776.425 2724333.058 6167750.849 3545868.092 5325808.788 5676505.764 5077606.701 4113130.315 6382691.129 0.846782053 0.740561674 0.426831411 0.966324505 0.555544365 0.834414306 0.889359308 0.79552756 0.644419451 1 22.6057334 -6.392997688 18.88370625 0.823544588 0.706560059 0.131287547 0.160566453 6.359135596 918.2724069 0.05498223 0.048489474 4.05E-07 6.392997688 -0.116984529 KETQS(ph)PEQVKSEK ddPTM_HeLa_A485_30min_R1 4 KETQSPEQVKSEK 13 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KET(0.01)QS(0.99)PEQVKSEK;KET(0.003)QS(0.997)PEQVKSEK;KET(0.006)QS(0.994)PEQVKSEK;KET(0.052)QS(0.948)PEQVKSEK ;;; 138.66 3.78E-06 7981250000 756600 617770 488220 1478400 2056930 1586440 3203850 4475830 954710 2368210 TRUE FALSE FALSE 924903.0598 690012.8276 668832.8945 1559161.248 1852134.827 1669503.545 2519321.274 3378125.675 1146311.54 1777858.831 0.520234252 0.388114521 0.376201351 0.876988218 1.041778343 0.939052931 1.41705361 1.900109062 0.644770845 1 20.76170934 -5.652998776 1.202762152 1.26637284 0.394501589 0.506363217 0.317676596 0.362069007 1.094014586 0.126406932 0.207472108 2.22E-06 5.652998776 -0.871871251 KETQS(ph)PEQVKSEK ddPTM_HeLa_A486_30min_R1 5 KETQSPEQVKSEK 13 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KET(0.001)QS(0.999)PEQVKSEK;KET(0.002)QS(0.763)PEQVKS(0.235)EK;KET(0.044)QS(0.912)PEQVKS(0.044)EK;KETQS(1)PEQVKSEK;KET(0.003)QS(0.997)PEQVKSEK ;;;; 189.59 1.45E-17 6006200000 1841070 1400310 709140 2202210 2892120 2444560 4596960 5111030 1143380 3424270 TRUE FALSE FALSE 1712020.5 1289344.336 983737.9994 5126856.174 2529363.342 2142975.042 3446751.986 3947360.042 1242489.099 2566810.504 0.666983596 0.502313799 0.383253068 1.997364498 0.985411014 0.834878554 1.342815132 1.537846302 0.484059535 1 21.29154536 -5.152758553 21.67899586 1.178239987 0.515957765 0.366832145 0.39201965 10.51456547 2086.043272 0.104131799 0.180362116 7.03E-06 5.152758553 -0.662282221 KETS(ph)PQVK ddPTM_HeLa_A485_30min_R1 2 KETSPQVK 8 1 Q9GZR2;A0A0C4DG22 Q9GZR2 REXO4 RNA exonuclease 4 1 0 KET(0.121)S(0.879)PQVK;KET(0.224)S(0.776)PQVK ; 83.045 0.0040194 600870000 1058830 678040 259660 1663810 449410 927320 1009520 1311560 730500 1991820 TRUE FALSE FALSE 1294363.081 757330.8798 355719.0394 1754699.727 404665.1624 975873.0413 793827.805 989897.8536 877104.6495 1495295.931 0.865623355 0.506475584 0.237892067 1.173479905 0.270625469 0.652628701 0.530883412 0.66200799 0.586575962 1 20.5119996 -9.953533634 1.010288513 1.034874063 0.602102538 0.171712679 0.25672732 241.8878766 106.3491476 28.54064725 0.07433384 1.11E-10 9.953533634 -0.432771526 KETS(ph)PQVK ddPTM_HeLa_A486_30min_R1 2 KETSPQVK 8 1 Q9GZR2;A0A0C4DG22 Q9GZR2 REXO4 RNA exonuclease 4 1 0 KET(0.204)S(0.796)PQVK;KET(0.194)S(0.806)PQVK ; 76.332 0.0070266 482110000 768020 355690 340370 420910 280020 1336620 733670 537070 745710 1197080 TRUE FALSE FALSE 714185.7641 327503.829 472170.3794 979899.7516 244897.2805 1171721.414 550098.006 414790.8852 810348.7432 897323.3763 0.795906786 0.364978599 0.526198684 1.092025214 0.27291976 1.305796155 0.613043213 0.462253515 0.903073256 1 19.77526847 KETSFGS(ph)SENITMTSLSK ddPTM_HeLa_A485_30min_R1 1 KETSFGSSENITMTSLSK 18 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 KET(0.137)S(0.137)FGS(0.699)S(0.028)ENITMTSLSK 92.336 0.00039209 282170000 177910 199080 122090 231940 237400 233280 267950 311930 165110 300770 TRUE FALSE FALSE 217485.4657 222360.6742 167256.1716 244610.2949 213763.6224 245494.1801 210700.2935 235428.6784 198246.0625 225793.5743 0.96320485 0.98479629 0.740748146 1.083335944 0.946721461 1.087250516 0.933154516 1.04267218 0.877996919 1 17.7846449 -5.304904559 24.99992077 0.996799694 0.905103672 0.215056228 0.086715912 718.1709808 413069.8958 0.023363734 0.034654234 4.96E-06 5.304904559 -0.091696022 KETTSGTSTEPVKNS(ph)SPAPPQPAPGK ddPTM_HeLa_A486_30min_R1 1 KETTSGTSTEPVKNSSPAPPQPAPGK 26 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 KETTSGTSTEPVKNS(0.566)S(0.434)PAPPQPAPGK 115.76 0.00010733 214490000 171840 159220 58018 81700 130360 176440 218610 200590 99790 241440 TRUE FALSE FALSE 159794.9034 146602.8273 80484.12338 190201.7289 114009.0332 154672.6267 163911.4658 154920.0358 108439.8775 180981.8525 0.882933295 0.810041589 0.444708253 1.050943651 0.629947322 0.854630586 0.905679014 0.855997625 0.59917542 1 17.46548552 KETTSGTSTEPVKNSS(ph)PAPPQPAPGK ddPTM_HeLa_A485_30min_R1 4 KETTSGTSTEPVKNSSPAPPQPAPGK 26 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 KETTSGTSTEPVKNS(0.015)S(0.985)PAPPQPAPGK;KETTSGTSTEPVKNS(0.44)S(0.56)PAPPQPAPGK;KETTSGTSTEPVKNS(0.25)S(0.75)PAPPQPAPGK;KETTSGTSTEPVKNS(0.113)S(0.887)PAPPQPAPGK ;;; 175.39 1.04E-14 4951310000 2444000 2029120 1038846 2834870 2289560 2640090 4015690 3828160 1809020 3876130 TRUE FALSE FALSE 2987659.368 2266407.933 1423158.365 2989731.77 2061603.367 2778321.03 3157705.026 2889297.758 2172073.721 2909882.126 1.026728657 0.77886589 0.489077668 1.027440852 0.708483464 0.95478817 1.085165959 0.992926047 0.746447322 1 21.47252928 -6.332924449 8.901852905 0.963951772 0.799389413 0.169072306 0.165189662 0.724946596 85.56841791 0.0585799 0.051639683 4.65E-07 6.332924449 -0.164562359 KETTSGTSTEPVKNSS(ph)PAPPQPAPGK ddPTM_HeLa_A486_30min_R1 3 KETTSGTSTEPVKNSSPAPPQPAPGK 26 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 KETTSGTSTEPVKNS(0.193)S(0.807)PAPPQPAPGK;KETTSGTSTEPVKNS(0.157)S(0.843)PAPPQPAPGK;KET(0.014)T(0.014)S(0.014)GT(0.014)S(0.014)T(0.014)EPVKNS(0.198)S(0.716)PAPPQPAPGK ;; 151.41 1.58E-09 4352480000 1330640 1124540 429654 529780 945630 1295640 1636120 1481160 897020 2021750 TRUE FALSE FALSE 1237369.007 1035427.355 596027.5353 1233354.614 827020.2678 1135797.11 1226745.471 1143932.201 974774.4158 1515490.641 0.816480798 0.683229132 0.393290146 0.813831891 0.545711234 0.749458347 0.809470833 0.754826306 0.64320715 1 20.53135351 -6.477835811 11.29230664 0.781175014 0.647109524 0.199425356 0.141742028 1.867095464 465.6640753 0.048895485 0.042965434 3.33E-07 6.477835811 -0.13406549 KETWDTAEEDS(ph)GT(ph)DSEYDESGK ddPTM_HeLa_A486_30min_R1 1 KETWDTAEEDSGTDSEYDESGK 22 1 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 2 0 KETWDTAEEDS(0.987)GT(0.958)DS(0.041)EY(0.013)DESGK 77.984 0.0034962 152930000 106400 95351 39213 68951 87458 124560 137930 132830 80050 157200 TRUE FALSE FALSE 98941.90945 87795.0395 54397.32376 160521.4126 76488.20213 109193.0536 103418.4551 102587.5087 86988.79845 117836.0968 0.83965705 0.745060655 0.461635486 1.362243124 0.649106719 0.92665199 0.877646646 0.870594932 0.7382186 1 16.84642202 KEVLAS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 KEVLASPDR 9 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 KEVLAS(1)PDR 59.871 0.018789 167530000 272990 285070 249480 315870 334130 260090 322710 281760 286080 383120 TRUE FALSE FALSE 333715.6837 318406.4567 341773.0337 333125.1783 300862.844 273707.9102 253760.3722 212657.9182 343493.6319 287615.2348 1.160285142 1.107056992 1.188299479 1.158232034 1.046060179 0.951646078 0.882291136 0.739383358 1.194281771 1 18.13378057 -6.040329434 2.424308136 0.93151177 1.15303205 0.424402191 0.108188462 0.264241671 3.093638856 0.037816977 0.040210301 9.11E-07 6.040329434 0.221520279 KEVLAS(ph)PDR ddPTM_HeLa_A486_30min_R1 2 KEVLASPDR 9 1 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 KEVLAS(1)PDR;KEVLAS(1)PDR ; 84.892 0.0028871 320010000 1328250 1374570 1167460 295750 1341260 1093410 1015280 1057310 1191270 1063170 TRUE FALSE FALSE 1235146.534 1265644.067 1619531.778 688520.9464 1173026.664 958516.1912 761246.2055 816583.5939 1294530.243 796945.3119 1.549851057 1.588119094 2.032174295 0.863950055 1.471903588 1.202737725 0.955205074 1.024641944 1.624365215 1 19.6041212 -5.262479173 24.99997537 1.1701208 1.70985524 0.509743043 0.251559134 77.32242548 1859097.307 0.068836089 0.10902444 5.46E-06 5.262479173 0.53973444 KEVLAS(ph)PDRLWGSR ddPTM_HeLa_A485_30min_R1 2 KEVLASPDRLWGSR 14 2 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 KEVLAS(1)PDRLWGSR;KEVLAS(1)PDRLWGSR ; 219.96 7.80E-28 6928600000 322796 433080 367890 327541 526170 453230 518490 615070 403880 500180 TRUE FALSE FALSE 394600.8566 483724.9387 503987.8202 345433.7355 473782.6673 476960.422 407710.3758 464223.1181 484935.0114 375494.3311 1.050883659 1.288234997 1.342198213 0.919943943 1.261757177 1.270220034 1.085796354 1.236298606 1.29145761 1 18.5184316 -10.00299159 4.384383414 0.999992169 1.195435915 0.174916672 0.12642941 18017704.68 20553738.77 1119.756354 0.029962046 9.93E-11 10.00299159 0.195443746 KEVLAS(ph)PDRLWGSR ddPTM_HeLa_A486_30min_R1 2 KEVLASPDRLWGSR 14 2 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 KEVLAS(1)PDRLWGSR;KEVLAS(1)PDRLWGSR ; 203.82 4.66E-22 6088500000 923020 921410 688850 306240 989770 822020 940380 1003420 671360 916910 TRUE FALSE FALSE 858321.0645 848394.1159 955591.168 712942.1965 865623.8174 720607.5301 705086.9777 774963.1705 729554.0254 687309.7679 1.248812551 1.234369356 1.390335497 1.037293852 1.259437677 1.048446514 1.025864917 1.127531146 1.0614632 1 19.39060094 -5.773789577 0.99469495 1.057049122 1.279809025 0.522352612 0.086167854 0.4475181 0.950392997 0.039067371 0.060038732 1.68E-06 5.773789577 0.222759903 KEVS(ph)PEVVR ddPTM_HeLa_A485_30min_R1 6 KEVSPEVVR 9 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR ;;;;; 160.22 8.19E-06 10330160000 13105680 13286350 10549390 18021730 18548490 15213610 21219450 22011690 13622290 23703600 TRUE FALSE FALSE 16020993.3 14840073.06 14452048.36 19006211.48 16701737.21 16010171.09 16685741.16 16613288.51 16356158.65 17794728.75 0.900322423 0.833958936 0.812153338 1.068080989 0.938577791 0.899714253 0.937678871 0.933607292 0.919157515 1 24.08494661 -5.222538681 24.99998952 0.950001253 0.847326287 0.494064004 0.049697434 486.7273444 312800.4228 0.013632135 0.023611102 5.99E-06 5.222538681 -0.102674966 KEVS(ph)PEVVR ddPTM_HeLa_A486_30min_R1 6 KEVSPEVVR 9 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR;KEVS(1)PEVVR ;;;;; 167.71 2.96E-09 10745400000 16922570 17954770 10195400 7874930 18068810 18769730 22525780 22204340 13993240 22682440 TRUE FALSE FALSE 15736385.23 16531968.64 14143331.92 18333235.02 15802451.36 16454111.55 16889591.59 17148896.5 15206185.31 17002609.39 0.925527657 0.972319499 0.831833021 1.078260084 0.929413304 0.967740373 0.993352915 1.008603804 0.894344213 1 24.01925284 -5.25355451 24.99989702 0.979760604 0.916136015 0.253423066 0.056085245 933.6657382 2960289.904 0.014643283 0.024802196 5.58E-06 5.25355451 -0.063624588 KFALS(ph)S(ph)PSK ddPTM_HeLa_A486_30min_R1 2 KFALSSPSK 9 1 A0A1B0GVP4;A8MVM7 A0A1B0GVP4 Putative uncharacterized protein ENSP00000382790 2 0 KFALS(1)S(1)PSK;KFALS(1)S(1)PSK ; 56.225 0.017501 901930000 1343820 2041820 1905580 64654 1935580 1051010 656060 985750 1800100 236855 TRUE FALSE FALSE 1249625.157 1880018.747 2643471.609 150517.7794 1692801.508 921347.0721 491906.8489 761316.2438 1956134.117 177544.9663 7.038358695 10.58897239 14.88902594 0.847772722 9.534494516 5.189373099 2.77060431 4.288019309 11.01768278 1 17.43782493 -5.259743576 24.99986221 5.196930533 10.81380416 0.363364998 3.561604289 171.4316391 2527259.428 0.962019335 1.561040661 5.50E-06 5.259743576 5.616873623 KFAT(ph)LPR ddPTM_HeLa_A485_30min_R1 1 KFATLPR 7 1 Q9NV70 Q9NV70 EXOC1 Exocyst complex component 1 1 0 KFAT(1)LPR 90.629 0.0057753 233700000 285180 255390 219770 259640 318060 306580 388510 397860 253040 398950 TRUE FALSE FALSE 348617.3071 285255.6389 301072.0684 273823.4758 286392.8296 322632.0547 305501.6647 300284.2112 303822.807 299499.1071 1.164001157 0.952442368 1.005251973 0.914271426 0.956239344 1.077238787 1.020041988 1.00262139 1.014436437 1 18.19219218 -6.236767229 24.88892215 1.02285497 0.991588039 0.028630074 0.065299995 2664.567008 2687976.007 0.021639652 0.021634416 5.80E-07 6.236767229 -0.031266931 KFDGVEGPRT(ph)PK ddPTM_HeLa_A485_30min_R1 5 KFDGVEGPRTPK 12 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YAN4 Q6PKG0 LARP1 La-related protein 1 1 0 KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK ;;;; 105.53 0.00055178 3906850000 7342570 6203880 3657970 10034340 8937700 7997840 12635200 13231800 5838390 13775200 TRUE FALSE FALSE 8975899.365 6929369.799 5011205.324 10582490.59 8047831.206 8416594.535 9935586.3 9986680.303 7010101.32 10341296.15 0.867966571 0.670067823 0.484581937 1.023323424 0.77822268 0.813881975 0.960767988 0.965708762 0.677874535 1 23.30191369 -5.269632228 24.99796455 0.882413307 0.673791678 0.351287911 0.133291539 680.1344451 2075221.205 0.03710044 0.056106063 5.37E-06 5.269632228 -0.208621629 KFDGVEGPRT(ph)PK ddPTM_HeLa_A486_30min_R1 6 KFDGVEGPRTPK 12 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YAN4 Q6PKG0 LARP1 La-related protein 1 1 0 KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK;KFDGVEGPRT(1)PK ;;;;; 113.47 0.00032139 4596010000 7758300 6690690 3095200 4155000 6934280 8094600 11188530 10348470 5114440 11872350 TRUE FALSE FALSE 7214483.234 6160495.357 4293744.332 9673049.982 6064517.943 7095970.552 8389041.454 7992349.287 5557763.777 8899436.284 0.81066744 0.692234335 0.482473743 1.086928393 0.681449673 0.797350565 0.942648634 0.898073657 0.624507396 1 23.08528252 -5.251022795 24.9947588 0.850516567 0.664836116 0.267787005 0.15058212 1033.130992 2479009.377 0.040031123 0.068396958 5.61E-06 5.251022795 -0.185680451 KFDHES(ph)S(ph)PGT(ph)DEDKSG ddPTM_HeLa_A485_30min_R1 2 KFDHESSPGTDEDKSG 16 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 3 0 KFDHES(1)S(1)PGT(1)DEDKSG;KFDHES(1)S(1)PGT(1)DEDKSG ; 107.25 0.00027983 983700000 1016400 672500 483000 2240830 1207910 938090 1826670 1398100 834120 3091700 TRUE FALSE FALSE 1242494.673 751143.025 661681.7993 2363240.869 1087646.239 987206.9418 1436387.032 1055213.783 1001520.233 2320996.089 0.535328207 0.323629595 0.285085271 1.018201142 0.468611836 0.425337615 0.618866632 0.454638329 0.43150449 1 21.14631266 -11.01874212 2.651682358 1.551575951 0.508175876 0.369135501 0.193420392 31466000.8 14552555.19 105619002.8 0.049898071 9.58E-12 11.01874212 -1.043400074 KFDHES(ph)S(ph)PGT(ph)DEDKSG ddPTM_HeLa_A486_30min_R1 2 KFDHESSPGTDEDKSG 16 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 3 0 KFDHES(1)S(1)PGT(1)DEDKSG;KFDHES(1)S(1)PGT(1)DEDKSG ; 104.23 0.00033639 1232140000 1462040 1444810 539010 1461680 1240800 1943890 2857500 2505300 1121460 3393700 TRUE FALSE FALSE 1359558.546 1330317.994 747729.1072 3402864.909 1085167.294 1704072.616 2142523.276 1934897.88 1218669.056 2543895.431 0.534439635 0.522945235 0.293930756 1.337659114 0.426577005 0.669867399 0.842221441 0.76060433 0.47905627 1 21.27860794 -13.99999994 0.046882329 2.232266303 5.09E-10 0.128026799 0.274936154 1411.47999 4.899143473 231.6182984 56.68154688 1.00E-14 13.99999994 -2.232266302 KFDHES(ph)SPGTDEDKSG ddPTM_HeLa_A485_30min_R1 1 KFDHESSPGTDEDKSG 16 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 KFDHES(0.5)S(0.5)PGTDEDKSG 134.52 4.40E-06 345030000 182710 175450 153410 114030 305750 180150 302490 279230 212570 234730 TRUE FALSE FALSE 223353.2092 195967.3513 210162.7429 120259.1702 275308.4564 189582.3754 237860.5404 210748.4047 255230.8492 176216.1309 1.267495819 1.112085201 1.19264191 0.682452676 1.562334022 1.075851425 1.349822739 1.195965452 1.448396625 1 17.42698647 -5.782355414 24.99999539 1.275937357 1.076339161 0.188244798 0.211255204 415.2787325 496361.6669 0.062475806 0.070915286 1.65E-06 5.782355414 -0.199598197 KFDHES(ph)SPGTDEDKSG ddPTM_HeLa_A486_30min_R1 1 KFDHESSPGTDEDKSG 16 2 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 KFDHES(0.5)S(0.5)PGTDEDKSG 175.33 6.25E-13 313610000 305420 300830 170620 25119 339080 263400 314940 315930 248710 147180 TRUE FALSE FALSE 284011.6352 276991.1352 236688.6334 58478.30144 296549.4246 230904.3861 236138.6809 243999.6357 270268.3831 110325.17 2.574314049 2.510679432 2.145372931 0.530054034 2.687958011 2.09294385 2.140388099 2.211640695 2.449743635 1 16.75140245 -4.841915806 4.73249314 1.935547965 2.543956619 0.148417301 0.619689499 0.40402193 16.10976676 0.163635527 0.367587529 1.44E-05 4.841915806 0.608408654 KFDLGQDVIDFTGHALALYR ddPTM_HeLa_A485_30min_R1 2 KFDLGQDVIDFTGHALALYR 20 1 P50395-2;P50395;Q5SX91;Q5SX87;P31150 P50395-2 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 0 ; ; 179.58 8.79E-19 91950000 65421 75340 64544 54138 75250 78305 93784 117252 55216 76754 FALSE FALSE TRUE 79973.67575 84150.35763 88421.5115 57095.42186 67757.84578 82404.92872 73746.28226 88495.76316 66297.34473 57620.64035 1.387934519 1.460420383 1.534545797 0.99088489 1.175930107 1.430128652 1.279858776 1.535834427 1.150583269 1 15.81429807 -7.995256955 21.94026325 0.999999982 1.342025095 0.341169559 0.159143104 25.83922415 119521.401 0.161107174 0.041597693 1.01E-08 7.995256955 0.342025114 KFDQLLAEEK ddPTM_HeLa_A485_30min_R1 1 KFDQLLAEEK 10 1 P35579;P35579-2;Q7Z406;Q7Z406-6;Q7Z406-2;A0A0C4DFM8;A1L2Z2;P35749-4;P35749-3;P35749;P35749-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35749-4;P35580 MYH9;MYH14;MYH11;MYH10 Myosin-9;Myosin-14;Myosin-11;Myosin-10 0 0 85.288 0.022785 19153000 30145 27507 23768 33956 39082 34589 40992 46648 27338 51844 FALSE FALSE TRUE 36850.65125 30723.70437 32560.77227 35810.9303 35190.85885 36400.02656 32233.72433 35207.50486 32824.48584 38920.24492 0.946824752 0.78940162 0.83660245 0.92011061 0.904178762 0.935246595 0.828199422 0.904606457 0.843378193 1 15.24823317 -11.27322633 2.261162913 1.507060741 0.877764485 0.351299687 0.049423008 3608816.174 629955.3663 9346442.877 0.012578484 5.33E-12 11.27322633 -0.629296256 KFDVNTSAVQVLIEHIGNLDR ddPTM_HeLa_A485_30min_R1 2 KFDVNTSAVQVLIEHIGNLDR 21 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 193.54 1.23E-28 28302200 43879 50234 51488 52197 66022 49264 58432 58250 51816 74095 FALSE FALSE TRUE 53639.73217 56108.42932 70535.55379 55048.38994 59448.61786 51843.38686 45947.52585 43964.09617 62214.99592 55624.48012 0.964318805 1.008700292 1.268066751 0.989643226 1.068749186 0.932024655 0.826030657 0.790373161 1.11848229 1 15.76343233 -6.295580176 4.768724652 0.911844127 1.065267198 0.22134823 0.115321829 0.276946347 15.94746445 0.041364702 0.037335886 5.06E-07 6.295580176 0.153423071 KFDVNTSAVQVLIEHIGNLDR ddPTM_HeLa_A486_30min_R1 2 KFDVNTSAVQVLIEHIGNLDR 21 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 209.75 1.38E-29 29817100 47381 47772 39111 18102.1 55090 44500 54589 51104 42826 53161 FALSE FALSE TRUE 44059.83658 43986.37274 54255.82663 42142.60363 48180.09851 39010.04244 40930.25482 39468.73479 46538.19216 39849.13958 1.105665945 1.103822396 1.361530693 1.057553665 1.209062454 0.978943155 1.027130203 0.990453877 1.167859398 1 15.28226095 -6.258220323 24.87904526 1.031921498 1.168656236 0.352071136 0.091321154 306.6959101 2370360.308 0.030260861 0.029067586 5.52E-07 6.258220323 0.136734738 KFEEFQTDMAAHEER ddPTM_HeLa_A486_30min_R1 1 KFEEFQTDMAAHEER 15 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 74.789 0.0099901 63722000 136910 79417 50631 41324 81020 94849 112320 112630 77045 168240 FALSE FALSE TRUE 127313.316 73123.70769 70236.67915 96204.3604 70857.71612 83147.49473 84216.348 86986.6077 83723.32263 126111.6089 1.009528917 0.579833279 0.556940632 0.762850948 0.561865134 0.659316739 0.667792194 0.689758924 0.663882757 1 16.94434156 -10.16030579 4.333130317 1.000074583 0.674519601 0.364119118 0.124954702 81104941.78 8.860666385 60545.96946 0.028849361 6.91E-11 10.16030579 -0.325554983 KFELLPT(ph)PPLS(ph)PSRR ddPTM_HeLa_A485_30min_R1 3 KFELLPTPPLSPSRR 15 2 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 2 0 KFELLPT(0.998)PPLS(0.9)PS(0.103)RR;KFELLPT(1)PPLS(0.991)PS(0.009)RR;KFELLPT(1)PPLS(0.956)PS(0.044)RR ;; 92.993 0.00084003 427408000 407878 500422 452204 430020 656187 741590 1011820 1171460 740016 947238 TRUE FALSE FALSE 498609.0539 558941.9998 619493.0774 453510.9037 590854.7183 780418.5057 795636.3912 884157.5982 888530.4234 711108.9992 0.701171064 0.786014522 0.871164727 0.637751602 0.830891915 1.097466783 1.118866998 1.243350315 1.249499619 1 19.43971119 -6.27773856 2.686214278 1.168915784 0.756592208 0.827914276 0.086529449 0.109753701 1.576258974 0.03265352 0.029938686 5.28E-07 6.27773856 -0.412323576 KFELLPT(ph)PPLS(ph)PSRR ddPTM_HeLa_A486_30min_R1 1 KFELLPTPPLSPSRR 15 2 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 2 0 KFELLPT(0.993)PPLS(0.962)PS(0.044)RR 69.765 0.0082335 437520000 338500 404050 310120 138710 527650 387880 504810 489360 349330 471490 TRUE FALSE FALSE 314772.898 372031.6065 430206.7693 322923.89 461467.2169 340027.3093 378501.1987 377943.4107 379610.2057 353425.8351 0.890633527 1.052644061 1.217247656 0.913696334 1.305697465 0.962089569 1.070949436 1.069371204 1.074087313 1 18.43104798 -4.283406671 4.595389297 1.080347998 0.881830125 0.204891846 0.10871309 0.250361551 13.37594854 0.025147334 0.151919882 5.21E-05 4.283406671 -0.198517873 KFELLPTPPLS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 KFELLPTPPLSPSR 14 1 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1;P04198 H0YBT0 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 0 KFELLPT(0.01)PPLS(0.962)PS(0.028)R;KFELLPT(0.01)PPLS(0.925)PS(0.065)R ; 84.499 0.0013831 599430000 860830 995180 831750 814270 1144540 1140490 1393400 1589070 1124030 1668060 TRUE FALSE FALSE 1052318.664 1111557.644 1139448.937 858751.5083 1030585.579 1200204.293 1095688.707 1199348.091 1349612.511 1252243.34 0.840346784 0.887653069 0.90992613 0.685770473 0.822991463 0.958443343 0.874980662 0.957759608 1.07775579 1 20.25608351 -7.159786216 1.136021288 1.035941003 0.837608715 0.547089799 0.068823985 0.419355682 0.971397488 0.060956677 0.02526684 6.92E-08 7.159786216 -0.198332288 KFELLPTPPLS(ph)PSRR ddPTM_HeLa_A485_30min_R1 2 KFELLPTPPLSPSRR 15 2 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 0 KFELLPT(0.018)PPLS(0.943)PS(0.04)RR;KFELLPTPPLS(0.5)PS(0.5)RR ; 105.38 0.00022141 1551200000 732630 961020 805230 637180 1061440 1148910 1412270 1801930 1080890 1339650 TRUE FALSE FALSE 895601.016 1073402.929 1103118.085 671987.53 955759.3067 1209065.151 1110526.977 1360003.842 1297814.708 1005699.909 0.890525104 1.067319306 1.096866048 0.66817897 0.950342441 1.202212648 1.10423295 1.352295878 1.290459208 1 19.93976845 -6.256044743 6.057465383 1.207341163 0.935347848 0.448560271 0.14088907 0.148893522 25.05111785 0.049934658 0.047256484 5.55E-07 6.256044743 -0.271993315 KFELLPTPPLS(ph)PSRR ddPTM_HeLa_A486_30min_R1 2 KFELLPTPPLSPSRR 15 2 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 0 KFELLPTPPLS(0.969)PS(0.031)RR;KFELLPT(0.018)PPLS(0.936)PS(0.046)RR ; 108.71 0.00018354 2147200000 1289910 1342050 1052380 461120 1515100 1181490 1471060 1429670 1037700 1389580 TRUE FALSE FALSE 1199493.97 1235701.07 1459889.72 1073510.664 1325062.03 1035729.776 1102985.229 1104165.35 1127648.672 1041620.123 1.151565665 1.186326034 1.401556755 1.030616287 1.272116389 0.994345014 1.058913133 1.060046101 1.082591097 1 19.9903978 -6.264466554 24.98978245 1.044165327 1.208057916 0.462545892 0.091144587 255.1909043 2106628.096 0.030723432 0.028251787 5.44E-07 6.264466554 0.163892589 KFFVGGNWK ddPTM_HeLa_A485_30min_R1 2 KFFVGGNWK 9 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 159.37 4.35E-06 253140000 523060 676510 536640 510390 777740 696960 877410 1045450 526510 729170 FALSE FALSE TRUE 639412.8925 755621.9596 735165.4675 538271.3133 700305.4748 733451.7479 689944.1857 789051.7483 632175.7276 547401.3384 1.168087923 1.380380183 1.343009993 0.98332115 1.279327297 1.339879347 1.260399158 1.441450163 1.154866975 1 19.06223944 -8.004621498 24.59712201 0.99999998 1.274068759 0.339203234 0.120159561 145.2826697 773247.1372 0.117463264 0.030328884 9.89E-09 8.004621498 0.27406878 KFFVGGNWK ddPTM_HeLa_A486_30min_R1 2 KFFVGGNWK 9 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 166.16 2.45E-06 248620000 792950 772530 521730 251170 829490 729110 834270 773910 608130 857950 FALSE FALSE TRUE 737368.2998 711311.9093 723757.8284 584736.4534 725447.6295 639159.8212 625526.822 597707.5873 660843.198 643113.7357 1.146559712 1.106043721 1.125396315 0.909227126 1.128023846 0.99385192 0.972653494 0.929396395 1.02756816 1 19.29471438 -4.679327971 0.610766254 0.98151821 1.214894018 0.443258345 0.061590889 2.130198221 0.850532908 0.032554855 0.326373487 2.09E-05 4.679327971 0.233375808 KFGLHGS(ph)SGK ddPTM_HeLa_A485_30min_R1 2 KFGLHGSSGK 10 1 Q9NV70-2 Q9NV70-2 EXOC1 Exocyst complex component 1 1 0 KFGLHGS(0.893)S(0.107)GK;KFGLHGS(0.998)S(0.002)GK ; 134.56 4.34E-05 2112930000 3033300 2471520 1685110 3376500 3545990 3212860 4316700 4329470 2799230 4707850 TRUE FALSE FALSE 3708047.12 2760542.765 2308502.312 3560949.645 3192938.785 3381080.382 3394401.781 3267660.694 3361009.785 3534269.637 1.049169277 0.781078709 0.653176625 1.007548945 0.903422521 0.956656036 0.960425245 0.924564629 0.950977184 1 21.75298068 -5.310514152 24.99990071 0.952327177 0.823134347 0.280111966 0.095035189 477.7663024 243384.8385 0.026831629 0.039797802 4.89E-06 5.310514152 -0.12919283 KFGLHGS(ph)SGK ddPTM_HeLa_A486_30min_R1 2 KFGLHGSSGK 10 1 Q9NV70-2 Q9NV70-2 EXOC1 Exocyst complex component 1 1 0 KFGLHGS(0.982)S(0.018)GK;KFGLHGS(0.551)S(0.449)GK ; 102.62 0.0010384 1599190000 1196980 1130080 607270 443820 1085300 1280740 1503700 1376870 937460 1548960 TRUE FALSE FALSE 1113077.883 1040528.345 842421.2073 1033235.389 949171.554 1122735.32 1127458.355 1063386.758 1018719.788 1161090.334 0.958648824 0.89616485 0.725543209 0.889883723 0.817482952 0.966966383 0.971034141 0.915851874 0.877382024 1 20.14704879 -6.266289571 24.96198118 0.942536832 0.85415347 0.320085619 0.064431643 531.1136128 2733421.277 0.023044785 0.020968568 5.42E-07 6.266289571 -0.088383362 KFHS(ph)S(ph)DS(ph)EEEEHKK ddPTM_HeLa_A486_30min_R1 1 KFHSSDSEEEEHKK 14 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 3 0 KFHS(1)S(1)DS(1)EEEEHKK 80.585 0.0020513 267670000 194260 147560 56995 276560 158750 278890 374030 346380 143280 566800 TRUE FALSE FALSE 180643.3772 135866.8082 79064.99038 643845.6566 138838.0947 244483.3873 280443.7379 267516.8354 155699.6258 424869.5908 0.425173703 0.319784732 0.186092373 1.515395949 0.32677814 0.575431598 0.660070158 0.629644581 0.366464509 1 18.69666056 -14 0.056166943 2.172557723 8.08E-12 0.106393636 0.355293764 1219.442453 5.017240689 219.2389604 40.80854537 1.00E-14 14 -2.172557723 KFHSS(ph)DS(ph)EEEEHKK ddPTM_HeLa_A485_30min_R1 2 KFHSSDSEEEEHKK 14 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KFHS(0.455)S(0.556)DS(0.989)EEEEHKK;KFHS(0.437)S(0.564)DS(1)EEEEHKK ; 156.39 1.40E-08 1195620000 644459 365017 246528 1167010 622310 526517 1100930 937470 396295 1619410 TRUE FALSE FALSE 787816.6812 407702.5629 337728.9661 1230760.801 560350.6313 554084.616 865707.3117 707554.0126 475827.7715 1215720.89 0.648024302 0.335358688 0.277801401 1.012371188 0.46092046 0.455766303 0.712093803 0.582003664 0.391395571 1 20.21338062 -11.11312603 2.454135229 1.866208613 0.543044756 0.314332532 0.203034564 10437472.39 3581782.71 50304801.03 0.052157091 7.71E-12 11.11312603 -1.323163857 KFHSS(ph)DS(ph)EEEEHKK ddPTM_HeLa_A486_30min_R1 4 KFHSSDSEEEEHKK 14 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 KFHS(0.014)S(0.986)DS(1)EEEEHKK;KFHS(0.083)S(0.917)DS(1)EEEEHKK;KFHS(0.443)S(0.562)DS(0.995)EEEEHKK;KFHS(0.441)S(0.56)DS(0.999)EEEEHKK ;;; 128.26 1.59E-05 1295670000 814830 585160 226681 715310 597670 991970 1325030 1201240 488861 1675230 TRUE FALSE FALSE 757714.6248 538789.7905 314457.9539 1665277.83 522704.6555 869590.827 993493.4793 927743.8749 531235.8651 1255741.504 0.60340016 0.429061068 0.250416151 1.326131074 0.416251795 0.692491906 0.791160821 0.738801634 0.423045558 1 20.26010808 -14 0.048221972 2.194530253 4.18E-19 0.117788295 0.285380022 1390.882087 4.958573265 228.3087628 53.70153345 1.00E-14 14 -2.194530253 KFIEDR ddPTM_HeLa_A485_30min_R1 1 KFIEDR 6 1 P40227;P40227-2;Q92526-3;Q92526;J3KRI6;Q92526-2 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 0 67.757 0.012739 0 84543 99012 93062 78059 123010 113780 130680 147490 93509 108940 FALSE FALSE TRUE 103349.2987 110590.5921 127489.5064 82323.16551 110762.6925 119737.3449 102759.1504 111317.8462 112275.3986 81783.26289 1.263697424 1.352239911 1.558870384 1.006601627 1.354344258 1.464081288 1.256481422 1.361132368 1.372840782 1 16.319518 -10.24981876 4.690154122 0.999899056 1.333077048 0.345020734 0.137331398 0.000142278 2.28E-05 0.130513326 0.031644579 5.63E-11 10.24981876 0.333177992 KFKMHLEDY(ph)PPQK ddPTM_HeLa_A485_30min_R1 1 KFKMHLEDYPPQK 13 2 Q96P20-3;Q96P20-2;Q96P20-5;Q96P20-4;Q96P20-6;Q96P20 Q96P20-3 NLRP3 "NACHT, LRR and PYD domains-containing protein 3" 1 0 KFKMHLEDY(1)PPQK 45.257 0.033761 1136100000 370270 2273700 3238700 77489 2058900 1181600 623470 934500 1671400 99268 TRUE FALSE FALSE 452635.2841 2539589.436 4436829.904 81722.02786 1853908.687 1243466.749 490260.5412 705312.4098 2006834.649 74522.31449 6.073822145 34.07824158 59.5369311 1.09661151 24.87722905 16.68583105 6.578707929 9.464445845 26.92931188 1 16.18538486 -5.294695609 24.98873107 10 33.31454487 0.288458227 14.68043218 693.8188593 521334.0094 4.195937562 6.224014814 5.07E-06 5.294695609 23.31454487 KFLMECRNS(ph)PVTK ddPTM_HeLa_A485_30min_R1 2 KFLMECRNSPVTK 13 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 KFLMECRNS(1)PVTK;KFLMECRNS(1)PVTK ; 124.18 2.31E-05 3049800000 1685980 2357000 1908640 1639070 3783300 3050000 4450800 6169300 1961670 2451700 TRUE FALSE FALSE 2061020.434 2632630.647 2614725.361 1728608.244 3406621.368 3209693.284 3499850.22 4656269.502 2355359.175 1840536.31 1.119793412 1.430360614 1.420632316 0.939187254 1.850885174 1.743890227 1.901538264 2.52984387 1.279713507 1 20.81169478 -5.78018632 24.9935072 1.80464442 1.255779543 0.243478675 0.405032743 295.6453404 394154.0148 0.121253017 0.137717843 1.66E-06 5.78018632 -0.548864877 KFLMECRNS(ph)PVTK ddPTM_HeLa_A486_30min_R1 2 KFLMECRNSPVTK 13 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 KFLMECRNS(1)PVTK;KFLMECRNS(1)PVTK ; 99.021 0.0006289 2713000000 2057840 2272270 1840950 1457310 4437200 2725600 3968500 4516500 1753930 3149700 TRUE FALSE FALSE 1913596.043 2092207.05 2553815.142 3392691.328 3880645.001 2389343.184 2975539.325 3488191.545 1905962.065 2360994.619 0.810504195 0.886154942 1.081669192 1.43697546 1.643648389 1.012007043 1.2602906 1.477424606 0.807270821 1 21.17096332 -4.893520507 3.162074407 1.262821896 0.840190556 0.286327421 0.237933538 0.284633353 5.610434646 0.064274214 0.157080229 1.28E-05 4.893520507 -0.422631341 KFLPLFDR ddPTM_HeLa_A485_30min_R1 4 KFLPLFDR 8 1 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 156.92 0.00022814 1004940000 1161932 1456136 1254750 999732 1428631 1675620 1700018 2044407 1192622 1576391 FALSE FALSE TRUE 1420399.765 1626418.439 1718934.24 1054344.828 1286391.481 1763352.872 1336795.266 1543012.978 1431970.296 1183425.735 1.200244107 1.374330801 1.452507064 0.89092606 1.087006513 1.490041006 1.129597935 1.303852817 1.210021257 1 20.17453774 -8.040269143 20.49222193 0.999999993 1.241368827 0.151751505 0.169947691 1336.790277 680270.1871 0.168363802 0.043471306 9.11E-09 8.040269143 0.241368834 KFLPLFDR ddPTM_HeLa_A486_30min_R1 4 KFLPLFDR 8 1 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 158.76 0.00016111 1000969000 1346911 1654406 1359022 580587 2333001 1380596 1601491 1656082 1473647 1541567 FALSE FALSE TRUE 1252499.494 1523304.843 1885271.714 1351635.877 2040374.26 1210272.102 1200781.013 1279028.281 1601383.908 1155548.589 1.083900327 1.318252523 1.631494973 1.169691945 1.765719139 1.047357172 1.03914368 1.106858069 1.385821352 1 20.14014649 KFNGEDIDTIS(ph)PTLGFNIK ddPTM_HeLa_A485_30min_R1 2 KFNGEDIDTISPTLGFNIK 19 1 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 1 0 KFNGEDIDTIS(0.999)PT(0.001)LGFNIK;KFNGEDIDTIS(0.97)PT(0.03)LGFNIK ; 235.76 1.07E-45 729390000 1024120 999080 685760 1077240 1309910 1346080 2025600 2092000 935910 1620150 TRUE FALSE FALSE 1251931.961 1115913.715 939451.1609 1136086.893 1179490.761 1416558.667 1592814.012 1578933.72 1123738.552 1216276.422 1.029315325 0.917483637 0.772399386 0.934069652 0.96975551 1.164668362 1.30958225 1.29817013 0.923917074 1 20.21403971 -6.161743202 3.196700487 1.169715881 0.90707998 0.414371284 0.126253138 0.231854805 4.527451762 0.045171021 0.044817011 6.89E-07 6.161743202 -0.262635901 KFNGEDIDTIS(ph)PTLGFNIK ddPTM_HeLa_A486_30min_R1 2 KFNGEDIDTISPTLGFNIK 19 1 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 1 0 KFNGEDIDTIS(1)PTLGFNIK;KFNGEDIDTIS(0.999)PT(0.001)LGFNIK ; 222.78 5.38E-35 613040000 1326700 1226420 687460 588710 1312250 1439810 1735440 1727390 973670 1751690 TRUE FALSE FALSE 1233705.181 1129234.013 953662.9228 1370546.632 1147655.369 1262180.881 1301214.556 1334101.006 1058068.5 1313055.422 0.939568247 0.860004836 0.72629297 1.043784298 0.874034218 0.961254841 0.990982204 1.016027947 0.805806428 1 20.32449638 -5.270586677 24.99191232 0.954915372 0.843760296 0.289338264 0.081867537 825.3503907 2254990.864 0.022540723 0.033967304 5.36E-06 5.270586677 -0.111155076 KFNSLPQYS(ph)PVTFDR ddPTM_HeLa_A485_30min_R1 1 KFNSLPQYSPVTFDR 15 1 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 KFNSLPQY(0.005)S(0.985)PVT(0.01)FDR 81.003 0.0023844 314550000 240940 268550 227060 285830 327480 295050 318280 309470 244930 384210 TRUE FALSE FALSE 294536.2718 299954.5864 311058.9428 301444.1691 294874.9413 310498.3618 250276.8779 233571.9973 294085.2044 288433.5179 1.021158269 1.039943584 1.078442426 1.045107973 1.022332437 1.07649889 0.867710798 0.809794919 1.019594417 1 18.1378793 -6.758597418 24.99999978 0.908424601 1.047103517 0.499785162 0.059429332 54.67441708 480962.9745 0.022804458 0.01686637 1.74E-07 6.758597418 0.138678915 KFNSLPQYS(ph)PVTFDR ddPTM_HeLa_A486_30min_R1 2 KFNSLPQYSPVTFDR 15 1 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 KFNSLPQYS(0.999)PVT(0.001)FDR;KFNSLPQYS(0.998)PVT(0.002)FDR ; 119.38 5.17E-05 726360000 408320 393340 298370 191748 430050 373860 421300 417390 361070 466700 TRUE FALSE FALSE 379698.8766 362170.3059 413906.8546 446399.0344 376109.1189 327736.9543 315886.2839 322359.4086 392367.8383 349835.2823 1.08536473 1.035259518 1.183147829 1.276026339 1.07510345 0.936832192 0.902957191 0.921460541 1.121578806 1 18.41631627 -6.0652144 5.053349203 0.968967948 1.143919045 0.486371014 0.081508343 0.193505618 9.718068868 0.028997684 0.029540831 8.61E-07 6.0652144 0.174951097 KFPTTATKIS(ph)PK ddPTM_HeLa_A485_30min_R1 1 KFPTTATKISPK 12 2 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KFPTTAT(0.001)KIS(0.999)PK 130.29 1.31E-05 2145900000 956030 784210 414000 1499900 1101200 1062200 2022500 2181300 744590 2093000 TRUE FALSE FALSE 1168695.575 875916.5378 567155.828 1581835.739 991560.6615 1117815.15 1590376.353 1646332.755 894022.3832 1571253.619 0.743798176 0.557463497 0.360957532 1.006734826 0.631063407 0.711416118 1.012170367 1.047782952 0.568986682 1 20.58348464 -5.866650567 0.901121757 0.894750211 0.58206932 0.244967844 0.198281484 0.838789484 1.486728963 0.104268417 0.148865554 1.36E-06 5.866650567 -0.312680891 KFPTTATKIS(ph)PK ddPTM_HeLa_A486_30min_R1 2 KFPTTATKISPK 12 2 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KFPTTATKIS(1)PK;KFPTTAT(0.001)KIS(0.999)PK ; 149 6.46E-08 4376000000 3093100 2360910 839880 2519900 2136260 3111100 4917400 4750600 1570320 5697700 TRUE FALSE FALSE 2876289.663 2173822.893 1165104.029 5866454.549 1868310.351 2727284.113 3687014.509 3668992.085 1706436.602 4270958.834 0.673452912 0.508977721 0.272796829 1.373568507 0.437445179 0.638564833 0.86327559 0.85905583 0.399544146 1 22.02612856 -14 0.087758423 1.850125866 0.443575799 0.083260224 0.299467969 609.9601193 3.728786255 102.8239977 7.670519158 1.00E-14 14 -1.406550067 KFPVFK ddPTM_HeLa_A485_30min_R1 2 KFPVFK 6 1 P04080;A0A1W2PS52 P04080 CSTB Cystatin-B 0 0 ; ; 103.71 0.0041626 0 200606 243713 210979 215783 288730 267056 312000 322820 237898 308380 FALSE FALSE TRUE 245230.1126 272213.1153 289028.9117 227570.6789 259983.0274 281038.6392 245338.6512 243647.8888 285641.9465 231506.5413 1.059279411 1.175833364 1.248469741 0.982998915 1.123005104 1.2139555 1.059748246 1.052444944 1.233839635 1 17.82069343 -10.17367987 3.845046229 0.999918253 1.126622953 0.170187558 0.084582152 18973154.86 2.265923338 14142.3586 0.020219872 6.70E-11 10.17367987 0.1267047 KFQEQECPPS(ph)PEPTRK ddPTM_HeLa_A485_30min_R1 2 KFQEQECPPSPEPTRK 16 2 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 0 KFQEQECPPS(1)PEPTRK;KFQEQECPPS(0.999)PEPT(0.001)RK ; 171.07 1.48E-12 1497360000 895590 584050 349010 1145290 554060 685960 1085120 927130 656690 2320210 TRUE FALSE FALSE 1094810.906 652349.5669 478123.3225 1207854.293 498895.841 721875.8049 853275.2474 699749.9138 788481.6595 1741824.347 0.628542658 0.374520868 0.274495717 0.693442077 0.286421442 0.414436626 0.489874452 0.401733915 0.45267576 1 20.73216771 -8.084311448 19.3680104 1 0.439937632 0.633350125 0.126355638 3047.241096 700012.9206 0.116364888 0.030045262 8.24E-09 8.084311448 -0.560062368 KFQEQECPPS(ph)PEPTRK ddPTM_HeLa_A486_30min_R1 4 KFQEQECPPSPEPTRK 16 2 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 0 KFQEQECPPS(1)PEPTRK;KFQEQECPPS(1)PEPTRK;KFQEQECPPS(1)PEPTRK;KFQEQECPPS(0.999)PEPT(0.001)RK ;;; 193.54 1.16E-18 2189710000 1134010 1394370 961693 610414 1881230 1870000 1843740 1702410 1581510 2470710 TRUE FALSE FALSE 1054521.755 1283875.043 1334086.285 1421074.641 1645268.592 1639298.413 1382416.751 1314808.406 1718596.56 1852028.134 0.569387546 0.693226533 0.720338023 0.767307264 0.888360474 0.885136884 0.746433991 0.709928959 0.927953808 1 20.82067458 -3.308757522 0.468589204 0.856273811 2.07E-29 0.581105034 0.080203871 9.043156927 0.778564999 0.052494726 5.171071404 0.000491182 3.308757522 -0.856273811 KFS(ph)FKKPFK ddPTM_HeLa_A485_30min_R1 1 KFSFKKPFK 9 3 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 KFS(1)FKKPFK 83.617 0.0055892 3292500000 4106800 2294000 1237600 4257700 2940300 3317500 5231100 6323300 2808500 8658100 TRUE FALSE FALSE 5020343.492 2562263.345 1695439.741 4490287.37 2647553.408 3491199.17 4113432.751 4772500.76 3372140.189 6499795.011 0.772384896 0.394206793 0.260845109 0.690835228 0.407328755 0.537124504 0.632855766 0.734254042 0.51880716 1 22.63196279 -9.161491677 0.345989655 1.115130078 0.478560968 0.450728555 0.15222068 5.238293833 0.8004709 0.957804556 0.13798498 6.89E-10 9.161491677 -0.636569111 KFS(ph)FKKPFK ddPTM_HeLa_A486_30min_R1 1 KFSFKKPFK 9 3 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 KFS(1)FKKPFK 84.169 0.03128 10587000000 23809000 16451000 4918700 11828000 10114000 20277000 26079000 28760000 10046000 26929000 TRUE FALSE FALSE 22140112.05 15147362.85 6823352.367 27536181.75 8845407.811 17775429.9 19553758.36 22211975.83 10916795.37 20185803.12 1.096816011 0.750396839 0.338027292 1.364136051 0.438199449 0.88059067 0.968688649 1.100376125 0.540815508 1 24.26683765 -6.504147465 24.79261789 0.912806946 0.786703886 0.025618938 0.30626245 2810.707107 3720245.403 0.105737213 0.091654818 3.13E-07 6.504147465 -0.12610306 KFSGFSAKPNNSGEAPSS(ph)PTPK ddPTM_HeLa_A485_30min_R1 2 KFSGFSAKPNNSGEAPSSPTPK 22 2 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 KFSGFSAKPNNSGEAPS(0.037)S(0.961)PT(0.001)PK;KFSGFSAKPNNSGEAPS(0.162)S(0.833)PT(0.005)PK ; 127.24 1.04E-06 4918500000 3645360 2700680 1689590 5101100 3787250 3776670 5939100 5013400 2871640 6866800 TRUE FALSE FALSE 4456257.756 3016501.033 2314639.651 5379760.176 3410178.092 3974410.601 4670162.767 3783855.789 3447951.808 5155033.134 0.864447937 0.585156478 0.449005776 1.043593714 0.661523991 0.770976732 0.905942337 0.734011924 0.668851532 1 22.29755027 -14 0.162834188 1.930609432 0.676914636 0.177921176 0.161080461 235.510285 2.180231798 71.41286971 0.662179916 1.00E-14 14 -1.253694796 KFSGFSAKPNNSGEAPSS(ph)PTPK ddPTM_HeLa_A486_30min_R1 1 KFSGFSAKPNNSGEAPSSPTPK 22 2 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 KFSGFSAKPNNSGEAPS(0.022)S(0.974)PT(0.004)PK 162.91 6.66E-14 374640000 349740 325540 122970 166550 267010 370070 466830 445550 254870 575090 TRUE FALSE FALSE 325225.0321 299743.0248 170587.2773 387736.817 233519.116 324414.526 350024.1964 344107.9913 276962.3368 431083.7208 0.754435893 0.695324389 0.39571728 0.89944667 0.541702469 0.752555734 0.811963383 0.798239355 0.64247923 1 18.71760856 -14 0.158963892 2.134519787 0.615274717 0.314474817 0.136086035 156.6884614 1.434789878 55.81905191 0.574922703 1.00E-14 14 -1.51924507 KFT(ph)PERNPIT(ph)PVK ddPTM_HeLa_A486_30min_R1 2 KFTPERNPITPVK 13 2 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8;F8VXV5 F8VSE7 E2F7 Transcription factor E2F7 2 0 KFT(1)PERNPIT(1)PVK;KFT(1)PERNPIT(1)PVK ; 97.776 0.0016363 340130000 335050 342850 131961 205650 257890 422390 521680 446510 264890 583760 TRUE FALSE FALSE 311564.7252 315681.3174 183059.8332 478763.593 225543.0315 370279.8163 391150.1462 344849.4202 287850.8785 437582.6964 0.712013358 0.721420934 0.418343401 1.094109975 0.515429502 0.846193918 0.893888514 0.788078284 0.657820524 1 18.73919616 -13.99999998 0.090107382 1.779087247 0.541551369 0.168357666 0.179151292 385.6476083 2.409506353 58.68104 4.093902372 1.00E-14 13.99999998 -1.237535878 KFTFGLDWVPK ddPTM_HeLa_A485_30min_R1 1 KFTFGLDWVPK 11 1 P45974;P45974-2;H7C5J3;Q92995-2;Q92995 P45974;Q92995-2 USP5;USP13 Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13 0 0 91.03 0.011561 11929000 21579 21115 15855 21847 24533 23184 34585 33687 15698 33037 FALSE FALSE TRUE 26379.1741 23584.21557 21720.42428 23040.44629 22090.40838 24397.87839 27195.63222 25425.21043 18848.44461 24801.4839 1.063612734 0.950919536 0.875771158 0.928994668 0.890688979 0.983726558 1.096532463 1.025148759 0.759972455 1 14.59813882 -6.38720964 15.23818714 0.982407297 0.937952889 0.021385645 0.093155922 4.389555176 516.9094204 0.033778621 0.02978874 4.10E-07 6.38720964 -0.044454407 KFTFGLDWVPK ddPTM_HeLa_A486_30min_R1 1 KFTFGLDWVPK 11 1 P45974;P45974-2;H7C5J3;Q92995-2;Q92995 P45974;Q92995-2 USP5;USP13 Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13 0 0 99.671 0.004412 11396000 27531 32028 21833 13993 35907 33755 40863 39105 29284 46156 FALSE FALSE TRUE 25601.21907 29489.98464 30287.32231 32576.41117 31403.20924 29590.6513 30638.6452 30201.64516 31822.3607 34598.23717 0.739957326 0.852355121 0.875400737 0.941562745 0.907653447 0.85526471 0.885555095 0.872924392 0.919768268 1 15.07841091 -4.199063742 1.570196086 0.902542508 0.661779515 0.633564592 0.038935993 0.811816251 1.691133818 0.010608447 0.314018001 6.32E-05 4.199063742 -0.240762992 KFTNFQSPNIDPTEENDLDDSLS(ph)VK ddPTM_HeLa_A485_30min_R1 1 KFTNFQSPNIDPTEENDLDDSLSVK 25 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9 Q6ULP2-7 AFTPH Aftiphilin 1 0 KFTNFQSPNIDPTEENDLDDS(0.007)LS(0.993)VK 193.03 4.74E-21 102340000 237050 160030 107360 389010 228180 206480 388560 320800 156810 502430 TRUE FALSE FALSE 289780.9547 178744.1164 147076.9316 410260.6313 205461.598 217290.9735 305540.9818 242123.297 188280.3287 377183.4475 0.768275905 0.47389173 0.389934745 1.087695216 0.544725913 0.576088306 0.810059359 0.641924503 0.49917442 1 18.52490684 -10.34693906 3.356997511 1.002280089 0.644106766 0.23668382 0.192046541 162087860.7 235873478.1 3673881.761 0.046541014 4.50E-11 10.34693906 -0.358173323 KFTNFQSPNIDPTEENDLDDSLS(ph)VK ddPTM_HeLa_A486_30min_R1 1 KFTNFQSPNIDPTEENDLDDSLSVK 25 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9 Q6ULP2-7 AFTPH Aftiphilin 1 0 KFTNFQSPNIDPTEENDLDDS(0.002)LS(0.998)VK 185.47 1.39E-20 142010000 115070 118070 48010 84606 89511 133390 175200 153410 78056 219750 TRUE FALSE FALSE 107004.1872 108713.7032 66600.75775 196967.0438 78283.69572 116933.698 131363.1069 118481.8919 84821.95693 164723.1697 0.649600098 0.659978213 0.404319307 1.195745833 0.475243986 0.709880087 0.797478018 0.719278849 0.514936406 1 17.32968397 -11.1633989 2.262574738 1.734417801 0.68650902 0.175697612 0.20712885 17738984.86 3987502.838 66774454.1 0.049445217 6.86E-12 11.1633989 -1.047908781 KFTYLGS(ph)QDR ddPTM_HeLa_A486_30min_R1 2 KFTYLGSQDR 10 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 KFTYLGS(1)QDR;KFTYLGS(1)QDR ; 130.61 4.62E-05 466830000 517240 521329 435593 199667 653039 512379 562713 587389 446091 605933 TRUE FALSE FALSE 480984.147 480016.9914 604266.2752 464834.8666 571128.7593 449166.8885 421916.2556 453653.3473 484758.5271 454203.4328 1.058961937 1.056832592 1.330386852 1.023406767 1.25742942 0.988911259 0.928914722 0.998788901 1.067271826 1 18.79297908 -6.294722751 23.97456665 0.992460174 1.143982163 0.388602608 0.093125298 408.2627084 294076.8449 0.032146762 0.028353018 5.07E-07 6.294722751 0.151521989 KFVDKYSISLS(ph)PPEQQK ddPTM_HeLa_A486_30min_R1 1 KFVDKYSISLSPPEQQK 17 2 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3K3 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KFVDKYS(0.005)IS(0.065)LS(0.929)PPEQQK 84.946 0.00068238 263960000 294170 265320 123540 164100 283050 326880 406060 374110 197350 486940 TRUE FALSE FALSE 273550.2021 244295.0769 171377.9965 382033.0932 247547.2297 286552.8691 304459.4931 288933.3198 214456.4569 365007.0546 0.749438124 0.669288645 0.469519683 1.04664578 0.67819848 0.78506118 0.834119476 0.791582837 0.587540581 1 18.47756482 -11.61065749 2.28916482 7.537180828 0.738488249 0.229173695 0.145865386 6961585.678 647873.6947 242957911 0.036302184 2.45E-12 11.61065749 -6.798692578 KFVDKYSISLS(ph)PPEQQKK ddPTM_HeLa_A485_30min_R1 2 KFVDKYSISLSPPEQQKK 18 3 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3K3 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KFVDKYSIS(0.035)LS(0.965)PPEQQKK;KFVDKYSIS(0.034)LS(0.966)PPEQQKK ; 199.89 3.54E-25 1094730000 737150 691490 387620 848990 840100 1165900 1804570 2294500 648170 1397440 TRUE FALSE FALSE 901126.4744 772353.7403 531016.7682 895368.1739 756456.6942 1226944.721 1419008.878 1731770.277 778251.7736 1049083.926 0.858965095 0.736217305 0.506171866 0.853476211 0.72106404 1.169539148 1.352617119 1.650745221 0.741839384 1 20.00069867 -6.301502996 4.212178879 1.242346061 0.726483987 0.459966275 0.239149456 0.179839763 7.181694375 0.084247994 0.07593786 4.99E-07 6.301502996 -0.515862073 KFVDKYSISLS(ph)PPEQQKK ddPTM_HeLa_A486_30min_R1 1 KFVDKYSISLSPPEQQKK 18 3 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3K3 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KFVDKYSIS(0.001)LS(0.999)PPEQQKK 124.86 1.22E-05 428660000 154480 107690 54217 75544 109170 146070 205370 175440 101950 237370 TRUE FALSE FALSE 143651.7497 99156.2522 75211.27438 175870.2498 95476.88063 128049.3685 153984.2538 135496.1418 110787.1081 177931.007 0.80734523 0.557273597 0.422699088 0.988418223 0.536594955 0.719657415 0.865415514 0.761509442 0.62264082 1 17.44095842 -14 0.149845746 2.072675766 0.603343528 0.242327079 0.160091963 191.9927295 1.707488474 61.36833799 0.810338623 1.00E-14 14 -1.469332238 KGAAEEEQQDS(ph)GSEPRGDEDDIPLGPQSNVSLLDQHQHLK ddPTM_HeLa_A485_30min_R1 1 KGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLK 40 2 D6RGI7;A0A499FJW5;Q9UJV9 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 KGAAEEEQQDS(0.5)GS(0.5)EPRGDEDDIPLGPQSNVSLLDQHQHLK 67.804 0.00095573 236140000 171490 158610 111660 208590 234220 207590 283830 320970 162830 277150 TRUE FALSE FALSE 209637.3589 177158.0598 152967.6806 219984.7435 210900.2344 218459.0914 223187.4018 242251.6042 195508.4874 208061.6056 1.007573494 0.851469253 0.735203788 1.057305806 1.013643213 1.049973112 1.072698642 1.164326323 0.93966634 1 17.66665124 -5.288641207 24.61993727 1.049728424 0.863420884 0.496330627 0.081834562 458.9391501 415377.3486 0.023023576 0.034159849 5.14E-06 5.288641207 -0.18630754 KGAAIPAK(ac)GAK ddPTM_HeLa_A485_30min_R1 1 KGAAIPAKGAK 11 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 KGAAIPAK(1)GAK 77.062 0.027006 0 16335 19341 15690 18752 26095 30312 40071 51863 39734 55673 FALSE TRUE FALSE 19968.66439 21602.76171 21494.38392 19776.37428 23496.89017 31899.08945 31509.5035 39143.51793 47708.24934 41794.74569 0.477779301 0.516877453 0.514284357 0.473178481 0.562197228 0.76323205 0.753910641 0.936565525 1.141489165 1 15.35103396 -6.849955173 0.923902517 1.072174266 0.490493185 0.935833311 0.058518671 0.133255296 0.218619762 0.046927707 0.025188651 1.41E-07 6.849955173 -0.581681081 down KGAAIPAK(ac)GAK ddPTM_HeLa_A486_30min_R1 1 KGAAIPAKGAK 11 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 KGAAIPAK(1)GAK 135.66 0.00059467 0 114290 117760 70308 49387 139660 129080 142320 140980 103470 159610 FALSE TRUE FALSE 106278.8612 108428.2687 97533.14051 114975.4319 122142.5405 113155.422 106710.0307 108881.9316 112438.8629 119642.6171 0.888302712 0.906267945 0.815204004 0.960990612 1.020894924 0.945778559 0.891906524 0.910059761 0.939789396 1 16.86837185 -5.286410447 24.92451474 0.949037468 0.873559184 0.449635436 0.041803672 758.4174686 757001.6288 0.012723836 0.01888117 5.17E-06 5.286410447 -0.075478284 KGAANAS(ph)GSSPDAPAK ddPTM_HeLa_A486_30min_R1 1 KGAANASGSSPDAPAK 16 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.39)GS(0.305)S(0.305)PDAPAK 66.246 0.034239 84915000 136800 148150 76572 66421 133250 173490 189560 176310 114940 187630 TRUE FALSE FALSE 127211.0264 136410.0544 106222.7291 154631.4447 116536.5425 152086.5677 142130.083 136168.0618 124903.0917 140646.2267 0.904475217 0.969880655 0.755247628 1.09943543 0.828579232 1.081341258 1.010550275 0.968160078 0.888065714 1 17.10171132 -5.265547079 24.99804182 0.979876111 0.88586912 0.220759422 0.090475828 579.9700546 3529505.804 0.024322496 0.037579365 5.43E-06 5.265547079 -0.094006991 KGAANASGS(ph)SPDAPAK ddPTM_HeLa_A485_30min_R1 2 KGAANASGSSPDAPAK 16 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.028)GS(0.486)S(0.486)PDAPAK;KGAANASGS(0.5)S(0.5)PDAPAK ; 176.28 1.80E-12 1776590000 3502620 2426700 1866001 4443230 3568540 3089910 4461850 3441790 2844200 6113880 TRUE FALSE FALSE 4281765.735 2710481.456 2556312.421 4685952.404 3213243.628 3251692.91 3508539.298 2597685.606 3415004.851 4589802.234 0.93288676 0.59054428 0.556954808 1.020948652 0.700083242 0.708460353 0.764420583 0.565968962 0.74404183 1 22.13000056 -8.048544296 22.84680873 1.000000001 0.724132065 0.24005354 0.143155587 7176.56716 3377563.031 0.136424451 0.035224642 8.94E-09 8.048544296 -0.275867936 KGAANASGS(ph)SPDAPAKDAR ddPTM_HeLa_A485_30min_R1 1 KGAANASGSSPDAPAKDAR 19 2 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.012)GS(0.494)S(0.494)PDAPAKDAR 91.128 0.00025776 1096700000 404530 576740 306270 340800 635660 730600 969340 1365200 383340 538290 TRUE FALSE FALSE 494516.3029 644184.726 419572.018 359417.041 572371.4585 768853.0863 762232.5902 1030382.559 460272.8218 404104.2095 1.223734599 1.594105458 1.038276781 0.889416721 1.416395685 1.902610931 1.886227791 2.549794175 1.138995366 1 18.62436785 -6.086415162 4.446503253 1.800300478 1.198870758 0.21095225 0.440470101 0.293417323 10.2629916 0.144546298 0.146937307 8.20E-07 6.086415162 -0.60142972 KGAANASGS(ph)SPDAPAKDAR ddPTM_HeLa_A486_30min_R1 2 KGAANASGSSPDAPAKDAR 19 2 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.011)GS(0.569)S(0.42)PDAPAKDAR;KGAANAS(0.012)GS(0.564)S(0.425)PDAPAKDAR ; 98.74 0.00013006 916480000 1393670 1070480 597010 723850 1498070 999820 1803330 1830350 668320 1652360 TRUE FALSE FALSE 1295980.93 985651.2662 828188.2605 1685159.381 1310168.092 876472.3738 1352117.76 1413619.261 726250.5157 1238598.301 1.046328684 0.795779605 0.668649602 1.360537456 1.057782891 0.707632469 1.091651554 1.141305668 0.58634871 1 20.24027694 -3.934358848 19.15322513 0.944080303 2.896200766 0.019234639 0.230629923 1033.905412 358797.2168 0.055680109 15969.03064 0.000116316 3.934358848 1.952120463 KGAANASGSS(ph)PDAPAK ddPTM_HeLa_A485_30min_R1 4 KGAANASGSSPDAPAK 16 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.001)GS(0.078)S(0.922)PDAPAK;KGAANAS(0.001)GS(0.204)S(0.796)PDAPAK;KGAANAS(0.005)GS(0.103)S(0.892)PDAPAK;KGAANAS(0.007)GS(0.15)S(0.843)PDAPAK ;;; 152.81 2.21E-08 3628460000 4341020 2941140 2221970 5261580 4419940 3576580 5305230 4124480 3313930 6892700 TRUE FALSE FALSE 5306664.923 3285080.738 3043969.167 5549006.792 3979875.254 3763844.198 4171724.271 3112944.813 3979005.354 5174476.741 1.025546193 0.634862403 0.588266084 1.072380275 0.76913579 0.727386437 0.806211812 0.601596059 0.768967676 1 22.30298155 -5.977913823 24.99888264 0.756489614 0.814237997 0.008668912 0.167717565 1201.76625 1360247.017 0.052118618 0.059093221 1.05E-06 5.977913823 0.057748383 KGAANASGSS(ph)PDAPAK ddPTM_HeLa_A486_30min_R1 5 KGAANASGSSPDAPAK 16 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANASGS(0.249)S(0.751)PDAPAK;KGAANAS(0.012)GS(0.419)S(0.569)PDAPAK;KGAANAS(0.016)GS(0.106)S(0.878)PDAPAK;KGAANASGS(0.008)S(0.992)PDAPAK;KGAANAS(0.002)GS(0.239)S(0.759)PDAPAK ;;;; 235.53 6.87E-41 3191260000 6360240 6436740 3382383 3265212 5800580 7660050 9147810 8376340 5400930 8091950 TRUE FALSE FALSE 5914420.02 5926669.28 4692132.281 7601578.551 5073017.168 6715030.913 6858931.182 6469230.236 5869086.961 6065673.05 0.975064098 0.977083537 0.773555093 1.253212708 0.836348601 1.107054544 1.130778254 1.066531312 0.967590391 1 22.53223631 -5.244835973 24.99988901 1.051052522 0.915419201 0.242613617 0.115653049 1243.985611 1873077.179 0.030250383 0.052215875 5.69E-06 5.244835973 -0.135633321 KGAANASGSS(ph)PDAPAKDAR ddPTM_HeLa_A485_30min_R1 2 KGAANASGSSPDAPAKDAR 19 2 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.002)GS(0.111)S(0.887)PDAPAKDAR;KGAANASGS(0.209)S(0.791)PDAPAKDAR ; 165.1 9.13E-13 2663440000 580820 837150 401330 452940 970400 1050060 1312040 1931900 601270 720780 TRUE FALSE FALSE 710021.4052 935047.4103 549798.6677 477682.9653 873783.5687 1105039.518 1031711.936 1458098.496 721939.3738 541102.811 1.312174675 1.728040201 1.016070618 0.882795202 1.614819866 2.042198812 1.906683748 2.694679211 1.334200006 1 19.04554321 -5.987561526 7.340030282 1.900531786 1.252157545 0.226733955 0.469566476 0.185196558 54.76149207 0.145175683 0.160722269 1.03E-06 5.987561526 -0.648374241 KGAANASGSS(ph)PDAPAKDAR ddPTM_HeLa_A486_30min_R1 2 KGAANASGSSPDAPAKDAR 19 2 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANASGS(0.123)S(0.877)PDAPAKDAR;KGAANAS(0.006)GS(0.175)S(0.819)PDAPAKDAR ; 179.06 3.81E-18 1069590000 820360 570460 368690 390880 900460 672800 1028350 1003680 419630 996910 TRUE FALSE FALSE 762857.0003 525254.672 511456.6419 909988.394 787515.9103 589796.7765 771045.9532 775163.9742 456003.8663 747277.2472 1.020848692 0.702891295 0.684426889 1.21773866 1.053847034 0.789260985 1.031807078 1.037317779 0.610220461 1 19.51128407 -5.21773093 24.99989831 0.963867433 0.792739231 0.146821636 0.176424236 873.0561706 499360.3202 0.047850932 0.082879574 6.06E-06 5.21773093 -0.171128202 KGAAPAPPGK(ac)TGPAVAK ddPTM_HeLa_A486_30min_R1 1 KGAAPAPPGKTGPAVAK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 KGAAPAPPGK(1)TGPAVAK 141 8.99E-08 10683000 19681 19951 12344 8302.1 25651 20905 24033 27298 18319 28017 FALSE TRUE FALSE 18301.46353 18370.0101 17123.92738 19327.70836 22433.61239 18325.95365 18019.6892 21082.84131 19906.90567 21001.36084 0.871441792 0.874705703 0.815372276 0.920307427 1.068198036 0.872607913 0.858024837 1.003879771 0.947886464 1 14.35819519 -1 0.148402133 1.010861015 0.417095311 0.273326761 0.064648445 102.1878725 0.99880421 0.253947408 13.03291653 0.1 1 -0.593765704 KGAAPT(ph)PPGK ddPTM_HeLa_A485_30min_R1 2 KGAAPTPPGK 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KGAAPT(1)PPGK;KGAAPT(1)PPGK ; 72.958 0.010487 3207700000 3820400 3227700 2338800 4817800 4837700 4179300 6072100 6196900 3489000 6413400 TRUE FALSE FALSE 4670234.8 3605151.438 3204019.446 5080984.215 4356041.602 4398121.686 4774746.231 4677100.559 4189210.297 4814657.41 0.970003554 0.748786701 0.665471948 1.055315837 0.90474591 0.913485906 0.991710484 0.971429566 0.870095199 1 22.19900172 -5.266473869 24.99642914 0.954238355 0.790157332 0.427561526 0.086489004 389.393787 1933355.698 0.024097841 0.037025946 5.41E-06 5.266473869 -0.164081023 KGAAPT(ph)PPGK ddPTM_HeLa_A486_30min_R1 4 KGAAPTPPGK 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KGAAPT(1)PPGK;KGAAPT(1)PPGK;KGAAPT(1)PPGK;KGAAPT(1)PPGK ;;; 62.924 0.021055 7344200000 11058400 10487500 5321700 4776800 10438200 11987900 14140500 13956600 8245500 14112300 TRUE FALSE FALSE 10283263.27 9656432.305 7382404.76 11120631.81 9128943.624 10508954.78 10602397.34 10778986.85 8960226.579 10578488.22 0.972091952 0.912836702 0.697869545 1.051249628 0.862972424 0.993426902 1.002260163 1.018953429 0.847023354 1 23.33463013 -5.30300134 24.99737489 0.966886255 0.866122545 0.231114633 0.089312072 738.9166251 444418.6905 0.024823812 0.036820003 4.98E-06 5.30300134 -0.10076371 KGAGDGS(ph)DEEVDGK ddPTM_HeLa_A485_30min_R1 18 KGAGDGSDEEVDGK 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK ;;;;;;;;;;;;;;;;; 228.45 1.16E-27 89394720000 28643150 15247070 8820700 55433400 19640190 18657640 33535970 22998490 15044950 66153170 TRUE FALSE FALSE 35014719.9 17030082.2 12083843.99 58461586.28 17684743.72 19634525.18 26370736.05 17358074.27 18064333.46 49662402.18 0.705054898 0.342917005 0.243319764 1.177179994 0.356099241 0.395359957 0.53100001 0.349521439 0.363742644 1 25.56565071 -10.31783693 5.187763042 1.00014637 0.493764184 0.255801974 0.257858744 0.000434462 5.71E-05 0.24848687 0.060249686 4.81E-11 10.31783693 -0.506382186 KGAGDGS(ph)DEEVDGK ddPTM_HeLa_A486_30min_R1 16 KGAGDGSDEEVDGK 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK ;;;;;;;;;;;;;;; 237.06 9.26E-35 1.55E+11 24029660 22393840 6966491 15619180 13796010 29828900 39050640 31005740 17354570 44488580 TRUE FALSE FALSE 22345304.92 20619270.56 9664102.884 36362240.39 12065585.78 26148913.6 29279756.84 23946409.85 18858878.1 33348350 0.670057287 0.618299573 0.289792535 1.090375997 0.361804581 0.784114165 0.877997167 0.718068806 0.56551158 1 24.99111205 -13.99999999 0.119683572 2.045795982 0.508735855 0.177216676 0.220276271 269.5877793 2.090221958 68.82821364 2.087944512 1.00E-14 13.99999999 -1.537060127 KGAGDGS(ph)DEEVDGKADGAEAK ddPTM_HeLa_A485_30min_R1 4 KGAGDGSDEEVDGKADGAEAK 21 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGKADGAEAK;KGAGDGS(1)DEEVDGKADGAEAK;KGAGDGS(1)DEEVDGKADGAEAK;KGAGDGS(1)DEEVDGKADGAEAK ;;; 240.34 1.03E-46 3288350000 2529500 914660 611869 6888280 1862590 1679860 3750940 2238460 1210650 9764730 TRUE FALSE FALSE 3092178.548 1021621.531 838224.8051 7264569.294 1677144 1767814.872 2949521.027 1689474.175 1453616.35 7330562.518 0.421820091 0.139364684 0.114346587 0.990997523 0.228787899 0.241156783 0.40235944 0.230469922 0.198295335 1 22.80549248 -10.28380048 4.016576958 1.00088835 0.330890519 0.41124798 0.240589596 669975577 1421791374 7585248.411 0.060674384 5.20E-11 10.28380048 -0.669997831 KGAGDGS(ph)DEEVDGKADGAEAK ddPTM_HeLa_A486_30min_R1 2 KGAGDGSDEEVDGKADGAEAK 21 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGKADGAEAK;KGAGDGS(1)DEEVDGKADGAEAK ; 205 9.52E-27 1570220000 1432120 1202850 308960 1459040 920000 2397030 3303950 2666880 1185430 3937800 TRUE FALSE FALSE 1331735.783 1107531.785 428597.5862 3396718.856 804605.0213 2101308.81 2477266.764 2059689.642 1288184.027 2951749.249 0.451168331 0.375212016 0.145201218 1.150747766 0.272585831 0.711885947 0.839253797 0.697786115 0.436413773 1 21.49313874 -5.526498071 0.142958995 1.071678356 6.39E-25 0.228935551 0.271429632 26.38667158 1.085385427 2.021286198 6.295221386 2.98E-06 5.526498071 -1.071678356 KGAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_HeLa_A485_30min_R1 15 KGAGDGSDEEVDGKADGAEAKPAE 24 3 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE ;;;;;;;;;;;;;; 167.07 5.01E-14 2.04E+11 9835090 4888915 2598397 21571300 8968490 9476010 20977550 18765600 5836540 30283720 TRUE FALSE FALSE 12022871.84 5460631.081 3559652.179 22749685.5 8075555.645 9972159.231 16495525.07 14163307.18 7007880.042 22734545.93 0.528837122 0.240190901 0.156574589 1.000665928 0.355210773 0.438634634 0.725570905 0.622986147 0.308248076 1 24.43838285 -14 0.158063346 2.800777121 0.354657771 0.287963899 0.238704669 177.1267055 1.617628809 100.8594919 1.064571427 1.00E-14 14 -2.44611935 KGAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_HeLa_A486_30min_R1 18 KGAGDGSDEEVDGKADGAEAKPAE 24 3 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE ;;;;;;;;;;;;;;;;; 178.72 2.56E-20 2.16E+11 12865870 10125840 2734885 13965562 7931954 16496420 26777790 22425350 7564215 31841320 TRUE FALSE FALSE 11964038.95 9323431.561 3793905.715 32512534.12 6937054.367 14461259.42 20077703.72 17319587.35 8219887.247 23868046.22 0.501257574 0.390623995 0.158953342 1.362178279 0.290641903 0.605883669 0.841195946 0.72563909 0.344388777 1 24.50857714 -14 0.058171556 2.313593107 1.58E-14 0.126928087 0.326257311 946.0562579 4.021111944 185.7134745 32.59457776 1.00E-14 14 -2.313593107 KGAILSEEELAAMS(ph)PTAAAVAK ddPTM_HeLa_A485_30min_R1 3 KGAILSEEELAAMSPTAAAVAK 22 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 KGAILSEEELAAMS(0.967)PT(0.033)AAAVAK;KGAILSEEELAAMS(0.999)PT(0.001)AAAVAK;KGAILSEEELAAMS(0.999)PT(0.001)AAAVAK ;; 153.06 5.21E-10 664730000 1214280 1197770 927070 1275100 1737860 1522310 1809210 2153010 1158470 1681410 TRUE FALSE FALSE 1484392.397 1337838.782 1270031.772 1344755.484 1564832.556 1602015.798 1422657.504 1624980.922 1390964.303 1262265.431 1.175974847 1.059871204 1.0061527 1.065350798 1.239701665 1.26915921 1.127066834 1.287352788 1.101958644 1 20.26758388 -5.746729183 24.74942284 1.18796481 1.070576566 0.192556778 0.089991529 272.9408304 459211.5146 0.025514598 0.032793028 1.79E-06 5.746729183 -0.117388244 KGAILSEEELAAMS(ph)PTAAAVAK ddPTM_HeLa_A486_30min_R1 2 KGAILSEEELAAMSPTAAAVAK 22 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 KGAILSEEELAAMS(0.992)PT(0.008)AAAVAK;KGAILSEEELAAMS(0.994)PT(0.006)AAAVAK ; 167.23 3.99E-14 777610000 708110 696580 354620 306855 777800 730170 912790 908160 521150 881530 TRUE FALSE FALSE 658475.1457 641380.4639 491938.3611 714373.9476 680241.0713 640089.0492 684400.2875 701391.793 566323.7016 660789.1502 0.99649812 0.970628019 0.744471002 1.081092127 1.02943741 0.968673667 1.035731727 1.061445686 0.857041465 1 19.33383047 KGATPGK(ac)ALVATPGK ddPTM_HeLa_A485_30min_R1 1 KGATPGKALVATPGK 15 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 K(0.07)GATPGK(0.93)ALVATPGK 97.579 0.013349 23143000 11585 10455 11921 13723 20933 22084 41905 55558 42196 71994 FALSE TRUE FALSE 14162.04328 11677.6213 16331.07397 14472.65274 18848.83702 23240.28409 32951.65442 41932.31339 50664.35016 54047.22075 0.262030926 0.216063308 0.302163067 0.267777927 0.348747572 0.429999615 0.60968268 0.775845877 0.937408981 1 15.72193281 -7.072704526 0.853990981 1.012954766 0.251213847 0.993346049 0.022859012 0.041588735 0.05583673 0.01911109 0.00909203 8.46E-08 7.072704526 -0.761740919 down KGATPGK(ac)ALVATPGK ddPTM_HeLa_A486_30min_R1 1 KGATPGKALVATPGK 15 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 K(0.023)GATPGK(0.977)ALVATPGK 121.79 0.0003164 174190000 121910 150370 97395 55764 168970 179120 179100 182400 138930 190890 FALSE TRUE FALSE 113364.7385 138454.1336 135108.9523 129821.4102 147776.207 157021.9956 134287.2857 140871.5018 150972.5643 143089.9015 0.792262328 0.96760241 0.944224232 0.907271644 1.032750777 1.097366019 0.938481921 0.984496462 1.055088882 1 17.12656233 -3.03852486 0.650636584 1.010036044 2.47E-12 0.580848078 0.052461305 10.9011959 1.033702384 0.023442535 11.71655597 0.000915114 3.03852486 -1.010036044 KGATPGK(ac)ALVATPGKK ddPTM_HeLa_A485_30min_R1 1 KGATPGKALVATPGKK 16 3 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 KGATPGK(1)ALVATPGKK 102.58 0.0011907 21871000 24422 20194 16013 27352 40221 52114 87347 125580 71922 119240 FALSE TRUE FALSE 29854.58965 22555.51264 21936.87506 28846.1705 36216.45602 54842.60846 68684.59989 94781.3081 86356.08569 89515.66245 0.33351247 0.251972806 0.245061864 0.322247188 0.404582338 0.61265936 0.767291422 1.058823735 0.964703643 1 16.44985251 -6.626033045 1.123002428 1.029173933 0.274088945 0.97824688 0.04581619 0.062134699 0.159164229 0.028878322 0.018574925 2.37E-07 6.626033045 -0.755084988 down KGATPGK(ac)ALVATPGKK ddPTM_HeLa_A486_30min_R1 2 KGATPGKALVATPGKK 16 3 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; KGATPGK(1)ALVATPGKK;K(0.003)GATPGK(0.997)ALVATPGKK 121.27 3.61E-05 119401000 47487 47363 33961 19666 59905 59007 64130 66853 43364 65856 FALSE TRUE FALSE 44158.40652 43609.78339 47111.60871 45783.44186 52391.15631 51727.31628 48083.9957 51632.03129 47122.82644 49365.22895 0.894524496 0.883410942 0.954348024 0.927443118 1.061296735 1.047849212 0.974045836 1.045919008 0.954575264 1 15.5912076 -5.655460262 6.366314211 1.015713049 0.913544543 0.649791132 0.035691721 0.134989639 7.168783852 0.010746488 0.013887904 2.21E-06 5.655460262 -0.102168506 KGDECELLGHSK ddPTM_HeLa_A485_30min_R1 1 KGDECELLGHSK 12 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 76.728 0.012554 7206000 53186 90097 100090 53311 114470 69500 90404 86083 75540 101040 FALSE FALSE TRUE 65017.04221 100633.0604 137117.4561 56223.24494 103072.9649 73138.91253 71088.44687 64971.00928 90700.18511 75852.5875 0.857149958 1.326692519 1.807683305 0.741217232 1.358858917 0.964224359 0.937192114 0.856543085 1.195742797 1 16.21091077 -5.847848376 1.352808181 0.988418939 1.277999752 0.111500597 0.287468787 0.847131003 3.243591614 0.115490434 0.149671319 1.42E-06 5.847848376 0.289580812 KGDIFLVR ddPTM_HeLa_A486_30min_R1 2 KGDIFLVR 8 1 P55072;C9JUP7;C9IZA5 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 94.692 0.0011753 237140000 377290 441370 375660 165187 650890 448460 498030 530410 426410 514320 FALSE FALSE TRUE 350843.9193 406394.2338 521125.6125 384563.6841 569249.3069 393133.5648 373417.6264 409647.2218 463371.5621 385530.9243 0.910027957 1.054115787 1.35170898 0.997491147 1.476533453 1.019719924 0.968580217 1.062553471 1.201905043 1 18.55648706 KGDILTLLNSTNKDWWK ddPTM_HeLa_A485_30min_R1 1 KGDILTLLNSTNKDWWK 17 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 195.27 2.29E-18 8280600 11962 12168 6722.7 12358 13610 13903 20977 23250 9791.8 18656 FALSE FALSE TRUE 14622.90563 13590.94175 9209.706485 13033.08625 12254.94061 14630.93958 16495.09258 17547.90105 11756.92444 14005.40254 1.04409035 0.970407078 0.657582419 0.930575627 0.875015236 1.044663982 1.177766404 1.252938 0.839456375 1 13.77369583 -6.34559734 4.157847913 1.090867733 0.888120212 0.260179653 0.138572022 0.290360081 9.258812746 0.051140591 0.045044805 4.51E-07 6.34559734 -0.20274752 KGDILTLLNSTNKDWWK ddPTM_HeLa_A486_30min_R1 1 KGDILTLLNSTNKDWWK 17 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 155.49 9.13E-10 11809000 20146 18879 8936.1 8717.7 17923 20798 26148 25302 16293 27146 FALSE FALSE TRUE 18733.86943 17382.95928 12396.39724 20295.24617 15674.93021 18232.15422 19605.49383 19541.28694 17705.29036 20348.46491 0.920652713 0.854263914 0.609205524 0.997384631 0.77032495 0.895996543 0.963487611 0.960332243 0.870104474 1 14.31263234 -6.500744577 5.44487441 0.943781955 0.828627425 0.239596659 0.099216063 0.276324436 25.21075618 0.036196617 0.030230647 3.16E-07 6.500744577 -0.115154531 KGDRS(ph)PEPGQTWTR ddPTM_HeLa_A485_30min_R1 13 KGDRSPEPGQTWTR 14 2 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 KGDRS(1)PEPGQTWTR;KGDRS(0.983)PEPGQT(0.001)WT(0.017)R;KGDRS(1)PEPGQTWTR;KGDRS(1)PEPGQTWTR;KGDRS(1)PEPGQTWTR;KGDRS(0.825)PEPGQT(0.168)WT(0.007)R;KGDRS(1)PEPGQTWTR;KGDRS(1)PEPGQTWTR;KGDRS(0.999)PEPGQT(0.001)WT(0.001)R;KGDRS(0.998)PEPGQT(0.002)WTR;KGDRS(0.995)PEPGQT(0.001)WT(0.004)R;KGDRS(1)PEPGQTWTR;KGDRS(0.931)PEPGQT(0.069)WTR ;;;;;;;;;;;; 189.84 4.97E-18 1.67E+11 24704982 25545620 20655316 28463000 33931076 31899894 41640343 44388010 25956903 43929700 TRUE FALSE FALSE 30200520.01 28532958.04 28296576.93 30017861.62 30552778.93 33570123.12 32743543.55 33501780.95 31166215.34 32978834.26 0.915754626 0.865190013 0.858022352 0.91021597 0.926435989 1.017929344 0.992865402 1.01585704 0.945036902 1 24.97503707 -5.966060229 2.221357492 0.995183181 0.881188753 0.798381398 0.025400135 0.127031943 1.267387108 0.008859257 0.009907977 1.08E-06 5.966060229 -0.113994429 KGDRS(ph)PEPGQTWTR ddPTM_HeLa_A486_30min_R1 6 KGDRSPEPGQTWTR 14 2 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 KGDRS(0.97)PEPGQT(0.028)WT(0.002)R;KGDRS(1)PEPGQTWTR;KGDRS(0.967)PEPGQT(0.002)WT(0.03)R;KGDRS(0.998)PEPGQTWT(0.001)R;KGDRS(0.999)PEPGQT(0.001)WTR;KGDRS(1)PEPGQTWTR ;;;;; 195.46 1.03E-18 1.36E+11 23685490 26812820 18231630 11651970 30785890 30517530 36545250 35348600 23425960 34710480 TRUE FALSE FALSE 22025259.46 24688074.49 25291405.4 27126375.02 26924436.61 26752587.43 27401241.91 27300495.43 25456541.07 26018749.88 0.8465149 0.948857059 0.972045372 1.042570267 1.034809002 1.028204182 1.053134453 1.04926238 0.978392167 1 24.63304831 -4.275909511 1.102832144 1.030445476 0.761144673 0.841974504 0.02394321 0.589863207 0.604152707 0.007472046 0.184730486 5.30E-05 4.275909511 -0.269300803 KGDS(ph)SAEELKLATQLTGPVMPVR ddPTM_HeLa_A485_30min_R1 1 KGDSSAEELKLATQLTGPVMPVR 23 2 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 0 KGDS(0.639)S(0.361)AEELKLATQLTGPVMPVR 241.22 4.09E-49 491820000 106530 100170 62759 126630 134370 154040 218620 287960 98183 193710 TRUE FALSE FALSE 130227.231 111884.0101 85976.16572 133547.4763 120991.651 162105.2962 171910.051 217337.3585 117887.4275 145421.662 0.895514666 0.769376506 0.591219799 0.918346513 0.832005695 1.114725922 1.182148854 1.494532214 0.810659333 1 17.14988266 -6.220821113 2.233695834 1.165540748 0.778388646 0.428197315 0.181721992 0.270609644 2.652390623 0.068513088 0.064896921 6.01E-07 6.220821113 -0.387152101 KGDSS(ph)AEELK ddPTM_HeLa_A485_30min_R1 2 KGDSSAEELK 10 1 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 0 KGDS(0.296)S(0.704)AEELK;KGDS(0.156)S(0.844)AEELK ; 107.61 0.00050689 698590000 530110 298826 224376 926500 455480 401340 661280 510450 362190 1245110 TRUE FALSE FALSE 648031.1406 333771.1013 307382.0195 977112.349 410130.8119 422353.5418 519992.1258 385261.3371 434878.2108 934726.9916 0.693283864 0.357078702 0.328846842 1.045345173 0.438770695 0.451846952 0.556303745 0.412164558 0.465246232 1 19.83418553 -10.30913781 4.442933892 1.00040508 0.524618146 0.33645816 0.198957501 274409617.8 732.6356068 1137293.672 0.048099185 4.91E-11 10.30913781 -0.475786934 KGDSS(ph)AEELK ddPTM_HeLa_A486_30min_R1 2 KGDSSAEELK 10 1 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 0 KGDS(0.204)S(0.796)AEELK;KGDS(0.415)S(0.585)AEELK ; 137.46 1.94E-05 734670000 673560 565530 205431 420720 417880 822450 939740 855570 507480 1333520 TRUE FALSE FALSE 626346.9223 520715.3432 284979.3848 979457.422 365465.5938 720984.4811 704607.1124 660775.388 551468.775 999597.9122 0.62659887 0.520924801 0.285094018 0.979851408 0.365612602 0.721274497 0.70489054 0.661041185 0.551690603 1 19.93098836 -14 0.177251535 2.584962145 0.518322958 0.303832279 0.182749719 163.3324097 1.563692839 91.23902941 0.573148613 1.00E-14 14 -2.066639187 KGDSS(ph)AEELKLATQLTGPVMPVR ddPTM_HeLa_A485_30min_R1 1 KGDSSAEELKLATQLTGPVMPVR 23 2 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 0 KGDS(0.418)S(0.582)AEELKLATQLTGPVMPVR 125.52 2.60E-06 154810000 32911 40964 26702 54498 69629 66286 90530 110000 36127 78104 TRUE FALSE FALSE 40231.93841 45754.38346 36580.18096 57475.08774 62696.49228 69756.63246 71187.52594 83022.32753 43377.35752 58634.1102 0.686152451 0.780337304 0.623872023 0.980232966 1.069283597 1.189693716 1.214097489 1.415939071 0.739797319 1 15.83945257 -5.496684741 2.511102595 1.137496238 0.703785435 0.532273176 0.168484089 0.209414169 2.63286688 0.050933802 0.077284038 3.19E-06 5.496684741 -0.433710803 KGDVEGSQS(ph)QDEGEGSGESER ddPTM_HeLa_A485_30min_R1 9 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGS(0.002)QS(0.998)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER ;;;;;;;; 271.64 1.05E-72 13689920000 3156803 2775969 2323501 4057214 3967384 3090041 4517692 4297469 2975339 5191873 TRUE FALSE FALSE 3859022.937 3100594.427 3183060.709 4278849.327 3572377.319 3251830.769 3552450.198 3243507.99 3572462.246 3897634.61 0.990093562 0.795506695 0.816664728 1.097806684 0.916550081 0.834308778 0.911437462 0.832173437 0.916571871 1 21.89416742 -11.59410309 1.692890309 2.03227054 0.898170153 0.104166183 0.086471887 3647785.109 183094.0764 14419590.15 0.02294629 2.55E-12 11.59410309 -1.134100387 KGDVEGSQS(ph)QDEGEGSGESER ddPTM_HeLa_A486_30min_R1 7 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGS(0.003)QS(0.997)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER ;;;;;; 271.53 1.06E-72 18605530000 3382794 3474968 2003945 1530307 3355328 3648389 4596415 4218583 2736324 4256133 TRUE FALSE FALSE 3145677.609 3199598.88 2779926.172 3562632.033 2934471.475 3198287.859 3446343.351 3258103.742 2973510.768 3190369.594 0.985991596 1.002892858 0.871349256 1.116683171 0.919790447 1.002481927 1.080233261 1.021230815 0.932027052 1 21.60529213 -6.512188439 24.7964189 1.01460138 0.980165983 0.037786562 0.067865227 1635.21716 3792937.004 0.024278416 0.02013232 3.07E-07 6.512188439 -0.034435398 KGDVEGSQS(ph)QDEGEGSGESERGSGSQSSVPSVDQFTGVGIR ddPTM_HeLa_A485_30min_R1 1 KGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIR 41 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 KGDVEGS(0.213)QS(0.52)QDEGEGS(0.058)GES(0.058)ERGS(0.058)GS(0.058)QS(0.016)S(0.018)VPSVDQFTGVGIR 86.029 3.15E-05 621210000 44487 77156 45830 41637 98790 98033 130580 179090 54363 70940 TRUE FALSE FALSE 54382.97967 86178.72303 62784.42415 43911.52388 88954.12073 103165.8563 102680.5163 135167.8967 65273.15545 53255.96355 1.021162252 1.618198551 1.17891819 0.824537215 1.670312859 1.937170026 1.92805668 2.538080014 1.225649694 1 15.70065547 -5.933426619 7.104197691 1.831422105 1.196585042 0.261661871 0.438856989 0.264223735 23.23335693 0.132632148 0.150517741 1.17E-06 5.933426619 -0.634837062 KGDVVHCWYTGTLQDGTVFDTNIQT(ph)SAKK ddPTM_HeLa_A486_30min_R1 1 KGDVVHCWYTGTLQDGTVFDTNIQTSAKK 29 2 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 KGDVVHCWYTGTLQDGTVFDTNIQT(0.5)S(0.5)AKK 133.71 1.78E-06 706790000 204070 185210 90573 103270 181220 265720 327580 302240 128250 281060 TRUE FALSE FALSE 189765.7468 170533.2851 125645.2912 240417.779 158489.6978 232938.168 245616.0192 233426.5499 139366.8133 210680.7466 0.900726573 0.809439343 0.596377663 1.141147366 0.752274236 1.105645256 1.165820908 1.107963369 0.661507117 1 17.68469895 -5.266535484 24.98999251 0.997282435 0.772907009 0.258844679 0.171671686 576.2585872 2825826.183 0.048242751 0.074106397 5.41E-06 5.266535484 -0.224375426 KGDVVHCWYTGTLQDGTVFDTNIQTS(ph)AK ddPTM_HeLa_A485_30min_R1 1 KGDVVHCWYTGTLQDGTVFDTNIQTSAK 28 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 KGDVVHCWYTGTLQDGTVFDTNIQT(0.002)S(0.998)AK 373.07 5.42E-167 427560000 342250 313360 266160 471390 424340 347490 553650 552460 340650 657110 TRUE FALSE FALSE 418382.3318 350004.7261 364623.6598 497140.8421 382091.2197 365684.0391 435358.1546 416968.3188 409015.3304 493304.5702 0.848121743 0.709510406 0.739145108 1.00777668 0.774554388 0.741294651 0.882534201 0.845255333 0.829133471 1 18.91211913 -14 0.179778916 1.74723318 0.780586136 0.318225083 0.081298017 168.3143622 1.619154563 44.81279415 0.263013552 1.00E-14 14 -0.966647045 KGDVVHCWYTGTLQDGTVFDTNIQTS(ph)AK ddPTM_HeLa_A486_30min_R1 1 KGDVVHCWYTGTLQDGTVFDTNIQTSAK 28 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 KGDVVHCWYTGTLQDGTVFDTNIQT(0.021)S(0.979)AK 164.84 6.32E-14 409190000 64532 64750 47257 63742 76883 101330 125390 105970 68786 117900 TRUE FALSE FALSE 60008.64004 59618.97418 65556.17599 148394.5973 67239.61723 88828.93485 94016.09576 81842.94431 74748.42586 88377.0726 0.679006877 0.674597748 0.741778089 1.679107408 0.760826482 1.00511289 1.063806404 0.926065346 0.845789792 1 16.43138452 -5.028678893 24.98252368 1.039185443 0.684648342 0.31429494 0.232511793 784.4023686 683302.1722 0.062320322 0.108221241 9.36E-06 5.028678893 -0.3545371 KGDVVHCWYTGTLQDGTVFDTNIQTS(ph)AKK ddPTM_HeLa_A485_30min_R1 1 KGDVVHCWYTGTLQDGTVFDTNIQTSAKK 29 2 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 KGDVVHCWYTGTLQDGTVFDTNIQT(0.121)S(0.879)AKK 166.03 1.93E-14 641630000 584780 402060 246900 726320 546460 639430 892940 967270 438670 1085100 TRUE FALSE FALSE 714862.2935 449077.4195 338238.5844 765997.0225 492052.5237 672909.5661 702156.0744 730045.5159 526707.0453 814604.5398 0.877557463 0.551282736 0.415218143 0.940329921 0.604038524 0.826056735 0.861959442 0.896196228 0.646580051 1 19.63574033 -6.03021288 1.101721485 0.846471005 0.641205794 0.190390861 0.165137931 0.818031637 2.104327576 0.079159264 0.089377633 9.33E-07 6.03021288 -0.205265211 KGDVVIVLTGWRPGSGFTNTMR ddPTM_HeLa_A485_30min_R1 8 KGDVVIVLTGWRPGSGFTNTMR 22 2 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;;; ;;;;;;; 226.16 1.98E-35 2823074000 1871115 2133450 1948491 2025190 2607650 2026475 2897108 2992930 1369796.5 2683369 FALSE FALSE TRUE 2287338.076 2382938.419 2669318.904 2135821.002 2348023.21 2132578.097 2278117.209 2258909.225 1644702.093 2014454.492 1.135462769 1.182919956 1.325082753 1.060247829 1.165587617 1.058638011 1.130885417 1.121350338 0.816450359 1 20.94195778 -7.674120762 6.572494974 0.910480951 1.150411191 0.581639093 0.081353299 0.138509458 8.3377668 0.057290329 0.020936375 2.12E-08 7.674120762 0.23993024 KGDVVIVLTGWRPGSGFTNTMR ddPTM_HeLa_A486_30min_R1 6 KGDVVIVLTGWRPGSGFTNTMR 22 2 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;; ;;;;; 222.24 3.86E-35 2077264000 1570034 1493062 1321439 810134 1879381 1755723 2240210 1922240 1551374 2156888 FALSE FALSE TRUE 1459982.724 1374746.329 1833135.57 1886032.894 1643651.51 1539119.747 1679685.763 1484587.914 1685848.347 1616789.206 0.903013651 0.850294104 1.133812351 1.166529865 1.016614599 0.951960677 1.038902139 0.918232203 1.042713757 1 20.62470016 -4.743046736 24.99558911 1.032090588 0.876653776 0.437604725 0.071150576 247.2083576 335950.7258 0.01986997 0.052352098 1.81E-05 4.743046736 -0.155436813 KGEITGEVR ddPTM_HeLa_A485_30min_R1 4 KGEITGEVR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 97.456 0.0013684 308968000 1004344 1163370 940758 1109831 1380170 1226747 1509720 1708780 1077624 1544630 FALSE FALSE TRUE 1227756.858 1299416.002 1288783.532 1170458.257 1242755.429 1290977.576 1187155.989 1289699.026 1293893.252 1159582.168 1.058792462 1.120589845 1.11142062 1.009379318 1.071726923 1.113312719 1.023779101 1.112210123 1.115827139 1 20.14517362 KGEITGEVR ddPTM_HeLa_A486_30min_R1 1 KGEITGEVR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 0 78.653 0.02212 73398000 518950 493690 346150 245640 681930 531580 623160 636130 430020 643700 FALSE FALSE TRUE 482574.2849 454568.2064 480188.5502 571862.334 596395.9807 465999.0643 467238.7769 491297.0856 467294.4798 482513.3302 1.000126327 0.942084245 0.995181936 1.185174166 1.236019698 0.965774488 0.968343769 1.018204171 0.968459213 1 18.88020927 KGELSIIPYEITLLSPCLHMLPHLHFGLK ddPTM_HeLa_A485_30min_R1 1 KGELSIIPYEITLLSPCLHMLPHLHFGLK 29 1 J3KRL2;H3BPV7;H3BVA8;Q15046;Q15046-2 J3KRL2 KARS Lysine--tRNA ligase 0 0 59.691 0.010716 3739600 16681 9111.8 6962.7 12526 6408.9 13100 23339 25343 2737.8 21855 FALSE FALSE TRUE 20391.6309 10177.34575 9538.492472 13210.26366 5770.807413 13785.89574 18352.43199 19127.58951 3287.251347 16406.95071 1.242865372 0.620306962 0.581368997 0.805162635 0.351729429 0.840247282 1.118576651 1.16582233 0.200357239 1 14.00201951 -6.507510952 24.80102929 0.89849394 0.700155778 0.043221843 0.326350486 1814.636673 2928526.69 0.11596649 0.09903017 3.11E-07 6.507510952 -0.198338163 KGES(ph)PSLESR ddPTM_HeLa_A485_30min_R1 1 KGESPSLESR 10 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 KGES(0.93)PS(0.07)LESR 119.17 0.00018174 211620000 418300 299510 295240 682620 507520 360760 511850 402770 402410 871650 TRUE FALSE FALSE 511349.3919 334535.0891 404461.562 719909.8021 456989.5268 379648.8358 402489.0661 303990.026 483169.9959 654363.6965 0.781445234 0.511237238 0.618099024 1.100167699 0.698372372 0.580180162 0.615084651 0.464558208 0.738381421 1 19.31973319 -8.024528876 23.70434084 1.000000011 0.669797332 0.257591419 0.167171251 1733.383785 1675116.026 0.170560459 0.044038521 9.45E-09 8.024528876 -0.330202679 KGES(ph)PSLESR ddPTM_HeLa_A486_30min_R1 2 KGESPSLESR 10 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 KGES(0.866)PS(0.134)LESR;KGES(0.989)PS(0.011)LESR ; 148.85 2.48E-06 742000000 1081410 1252440 660410 481850 1063690 1333850 1485400 1425680 1017970 1508010 TRUE FALSE FALSE 1005608.743 1153192.093 916138.4384 1121771.151 930272.0817 1169293.149 1113737.209 1101083.786 1106208.459 1130394.481 0.889608682 1.020167838 0.810459051 0.992371398 0.822962335 1.034411587 0.985264196 0.974070385 0.978603911 1 20.1083949 -6.285510143 24.97896302 0.992274048 0.912761437 0.32443886 0.062723395 1002.114817 1039921.562 0.020696617 0.018261928 5.18E-07 6.285510143 -0.079512612 KGES(ph)QTDIEITR ddPTM_HeLa_A486_30min_R1 1 KGESQTDIEITR 12 1 B4DUR8;P49368-2;P49368 B4DUR8 CCT3 T-complex protein 1 subunit gamma 1 0 KGES(0.995)QT(0.005)DIEITR 71.601 0.0066419 163230000 119140 119830 65591 67227 117010 142730 152220 144480 100080 197940 TRUE FALSE FALSE 110788.9012 110334.2344 90989.59179 156507.8535 102333.5147 125121.4238 114132.946 111585.058 108755.015 148374.5356 0.746684064 0.743619745 0.613242639 1.05481613 0.689697287 0.84328098 0.769221925 0.752049922 0.732976279 1 17.17888399 -11.46042637 2.201845247 3.337418285 0.773608692 0.280096469 0.109749507 11166759.59 622502.565 130906764.4 0.027856162 3.46E-12 11.46042637 -2.563809593 KGESGQSWPR ddPTM_HeLa_A485_30min_R1 1 KGESGQSWPR 10 1 A0A087WYT3;Q15185-4;Q15185;B4DDC6;Q15185-3 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 0 79.659 0.031626 27130000 13581 17979 15686 18233 33094 19578 26808 27861 19048 28166 FALSE FALSE TRUE 16602.0466 20081.48765 21488.90415 19229.02262 29799.04516 20603.07381 21080.2518 21028.04607 22870.75888 21144.73456 0.785162214 0.94971576 1.016276846 0.909400048 1.409289158 0.974383185 0.996950411 0.99448144 1.081629037 1 14.36801083 -4.188276394 1.179459039 1.058401022 0.627827268 0.292154402 0.127777332 2.377509409 2.50982588 0.039539117 1.311007519 6.48E-05 4.188276394 -0.430573754 KGESGQSWPR ddPTM_HeLa_A486_30min_R1 2 KGESGQSWPR 10 1 A0A087WYT3;Q15185-4;Q15185;B4DDC6;Q15185-3 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 0 ; ; 68.44 0.0071603 271580000 440060 468760 353610 201664 604260 463490 511650 535160 390440 533730 FALSE FALSE TRUE 409214.0665 431613.7504 490537.262 469483.9835 528468.0763 406309.3162 383629.7583 413315.7505 424283.6536 400080.534 1.022829235 1.078817172 1.226096299 1.173473698 1.320904246 1.015568821 0.958881339 1.033081381 1.060495619 1 18.60993091 -6.459154272 24.9954078 1.011778769 1.164061273 0.480355084 0.078430678 199.4632415 78237.64921 0.02940799 0.025935385 3.47E-07 6.459154272 0.152282505 KGESPS(ph)LESR ddPTM_HeLa_A485_30min_R1 1 KGESPSLESR 10 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;Q8NDX5-3 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 KGES(0.261)PS(0.738)LESR 77.894 0.0052739 233620000 245280 177430 155450 388050 296840 201570 290900 226440 217570 497280 TRUE FALSE FALSE 299841.6898 198178.8951 212957.4238 409248.1889 267285.5673 212123.8935 228746.8386 170905.235 261234.3033 373317.2478 0.80318199 0.530859199 0.570446249 1.096247739 0.715974333 0.568213483 0.612741147 0.457801604 0.699764891 1 18.51004264 -8.040706967 23.3766105 1.000000003 0.666201446 0.25109966 0.170163905 5714.995656 3281920.634 0.173102762 0.044694853 9.11E-09 8.040706967 -0.333798557 KGFNGCDS(ph)PEPDGEDSLEQSPLLEDKYR ddPTM_HeLa_A485_30min_R1 2 KGFNGCDSPEPDGEDSLEQSPLLEDKYR 28 2 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 KGFNGCDS(1)PEPDGEDSLEQSPLLEDKYR;KGFNGCDS(1)PEPDGEDSLEQSPLLEDKYR ; 125.02 3.30E-06 876620000 119049 114595 77978 187470 156393 153774 196460 187166 98347 208308 TRUE FALSE FALSE 145531.0393 127995.8884 106825.3071 197711.0114 140821.9638 161825.3689 154484.7161 141263.245 118084.3408 156380.6492 0.930620509 0.818489302 0.683110779 1.264293328 0.900507604 1.034817093 0.987876165 0.903329445 0.755108393 1 17.25470248 KGFNGCDS(ph)PEPDGEDSLEQSPLLEDKYR ddPTM_HeLa_A486_30min_R1 2 KGFNGCDSPEPDGEDSLEQSPLLEDKYR 28 2 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 KGFNGCDS(1)PEPDGEDSLEQSPLLEDKYR;KGFNGCDS(1)PEPDGEDSLEQSPLLEDKYR ; 148.12 1.65E-09 800540000 265750 285860 125475 158832 229943 325230 412660 404570 195617 397530 TRUE FALSE FALSE 247122.2973 263207.4125 174062.2803 369768.9229 201101.4048 285106.4293 309408.1033 312458.2427 212573.2391 297985.9005 0.829308692 0.883288142 0.584129249 1.240894023 0.674868859 0.956778253 1.038331353 1.048567205 0.713366769 1 18.18488454 -5.237898976 24.9992703 0.947373605 0.7773467 0.203021333 0.169646814 1393.30028 1479645.22 0.044298364 0.076666847 5.78E-06 5.237898976 -0.170026906 KGGEFDEFVNDDT(ph)DDDLPISK ddPTM_HeLa_A485_30min_R1 7 KGGEFDEFVNDDTDDDLPISK 21 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK ;;;;;; 223.75 1.01E-35 10312680000 4631940 3476050 2303218 6630530 5001740 4644790 7329660 7215240 3690790 8756120 TRUE FALSE FALSE 5662299.073 3882543.81 3155274.183 6992739.065 4503749.203 4887984.022 5763618.263 5445691.077 4431497.699 6573380.428 0.861398353 0.590646449 0.480007846 1.063796496 0.685149635 0.743602789 0.876811912 0.828446054 0.674158106 1 22.64820405 -14 0.117252452 1.763041412 0.634848446 0.17684406 0.155740005 274.3041647 2.096699455 50.21963793 1.630257289 1.00E-14 14 -1.128192966 KGGEFDEFVNDDT(ph)DDDLPISK ddPTM_HeLa_A486_30min_R1 11 KGGEFDEFVNDDTDDDLPISK 21 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(0.999)DDDLPIS(0.001)K;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK ;;;;;;;;;; 272.27 1.50E-72 20007120000 3180779.4 3027596.5 1320574.1 1639452 2789764 3705264.7 4546528 4199232 2410384.8 4570712.7 TRUE FALSE FALSE 2957823.19 2787678.727 1831935.758 3816727.109 2439845.786 3248146.814 3408938.606 3243158.542 2619318.895 3426176.49 0.863301467 0.81364131 0.534688088 1.113990222 0.71211912 0.948038381 0.99496877 0.946582452 0.764502034 1 21.70816804 -5.264369627 24.99979584 0.918429645 0.744853399 0.289759875 0.134764283 349.8729317 2984994.458 0.036685275 0.057211847 5.44E-06 5.264369627 -0.173576246 KGGEFDEFVNDDT(ph)DDDLPISKK ddPTM_HeLa_A485_30min_R1 2 KGGEFDEFVNDDTDDDLPISKK 22 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 KGGEFDEFVNDDT(1)DDDLPISKK;KGGEFDEFVNDDT(1)DDDLPISKK ; 162.07 9.72E-14 1122150000 475840 389240 178014 617130 549810 630010 1091160 1232450 347880 835430 TRUE FALSE FALSE 581688.9664 434758.2321 243868.7864 650842.2492 495068.9859 662996.3494 858024.752 930189.7051 417696.3251 627172.6759 0.927478171 0.693203401 0.388838347 1.037740122 0.789366318 1.057119315 1.368083759 1.483147689 0.66599892 1 19.25850318 -6.084934753 1.591116093 1.16866913 0.712673496 0.303911891 0.259543572 0.426164865 2.172552957 0.106711267 0.110926934 8.22E-07 6.084934753 -0.455995634 KGGEFDEFVNDDT(ph)DDDLPISKK ddPTM_HeLa_A486_30min_R1 1 KGGEFDEFVNDDTDDDLPISKK 22 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 KGGEFDEFVNDDT(1)DDDLPISKK 212.01 1.96E-27 1450700000 514350 371680 113210 270910 378870 480060 725710 720870 250500 802340 TRUE FALSE FALSE 478296.7211 342226.7232 157047.9439 630692.171 331348.5918 420835.0781 544129.6822 556743.6375 272213.5417 601428.8416 0.79526735 0.569022799 0.26112473 1.048656345 0.550935653 0.699725469 0.904728281 0.925701594 0.452611386 1 19.19803453 -5.264233682 24.99062551 0.784506955 0.544526757 0.225903451 0.215936809 387.0669967 3461714.712 0.059191518 0.092389002 5.44E-06 5.264233682 -0.239980198 KGGHERPPS(ph)PGLR ddPTM_HeLa_A485_30min_R1 4 KGGHERPPSPGLR 13 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR ;;; 123.14 1.55E-05 13776800000 430333 565206 426188 403539 538100 547066 643147 786657 465461 537022 TRUE FALSE FALSE 526059.0912 631301.9251 583852.6764 425583.3138 484524.8746 575709.5298 505733.3894 593728.1373 558874.7532 403152.2986 1.304864422 1.56591424 1.448218647 1.055639061 1.201840784 1.428019961 1.254447491 1.472714256 1.386262103 1 18.62096542 -10.95133441 2.444678627 0.736547544 1.346486983 0.352537653 0.140847226 7874051.64 3824916.358 11788970.04 0.038340562 1.12E-11 10.95133441 0.609939438 KGGHERPPS(ph)PGLR ddPTM_HeLa_A486_30min_R1 4 KGGHERPPSPGLR 13 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR;KGGHERPPS(1)PGLR ;;; 124.84 1.40E-05 10411000000 556648 524470 444345 208965 640418 517661 592253 602346 464080 566442 TRUE FALSE FALSE 517629.8497 482909.0871 616407.284 486481.0805 560090.8028 453797.249 444065.0352 465204.9649 504306.8281 424601.2363 1.219096426 1.13732379 1.451732193 1.145736373 1.31909838 1.068761017 1.045840184 1.09562791 1.187718699 1 18.69574905 -6.272360218 24.90527106 1.08345696 1.252986325 0.460743888 0.094612012 660.4698855 1506214.96 0.032357133 0.028807087 5.34E-07 6.272360218 0.169529365 KGGS(ph)WIQEINVAEK ddPTM_HeLa_A485_30min_R1 2 KGGSWIQEINVAEK 14 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 KGGS(1)WIQEINVAEK;KGGS(1)WIQEINVAEK ; 189.55 6.80E-18 345000000 669060 501010 381360 968490 622710 651430 1004380 998760 605500 1199820 TRUE FALSE FALSE 817890.0888 559598.7613 522440.9337 1021396.156 560710.8059 685537.8675 789786.008 753812.544 727018.296 900726.9551 0.908033322 0.621274581 0.580021427 1.13396868 0.622509189 0.761093985 0.876831767 0.836893511 0.807146152 1 19.78073031 -14 0.135254721 1.739079934 0.706908408 0.147177151 0.154993519 268.8763268 2.256793644 53.21573536 1.04867604 1.00E-14 14 -1.032171526 KGGS(ph)WIQEINVAEK ddPTM_HeLa_A486_30min_R1 2 KGGSWIQEINVAEK 14 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 KGGS(1)WIQEINVAEK;KGGS(1)WIQEINVAEK ; 159.06 3.02E-09 334870000 847850 844330 374720 445880 762040 911200 1155350 1050590 670620 1237300 TRUE FALSE FALSE 788420.0933 777422.2158 519821.6193 1038031.174 666457.8375 798785.4084 866269.21 811393.5912 728749.8816 927472.0265 0.850074256 0.838216349 0.56047148 1.119204832 0.718574597 0.861250135 0.934011146 0.874844273 0.785737856 1 19.82294424 -13.99999999 0.119356071 1.501602626 0.762947746 0.115075567 0.135657623 346.0261115 2.677818364 42.32228088 1.295636792 1.00E-14 13.99999999 -0.73865488 KGGS(ph)YSQAASSDSAQGSDVSLTACKV ddPTM_HeLa_A486_30min_R1 1 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGS(0.821)YS(0.16)QAAS(0.009)S(0.01)DSAQGSDVSLTACKV 157.88 5.30E-19 0 65710 77131 37483 37298 73890 108010 83460 131190 92289 149510 TRUE FALSE FALSE 61104.06833 71018.85865 51997.42143 86831.62894 64622.0272 94684.82437 62577.42525 101320.9009 100288.6848 112071.7229 0.545222887 0.633691147 0.463965576 0.774786242 0.576613133 0.844859184 0.558369441 0.904071949 0.894861632 1 16.77406279 -7.231251312 0.442018404 1.023145304 0.552928701 0.6225266 0.108467573 0.639125695 0.315114417 0.114078819 0.090040229 5.87E-08 7.231251312 -0.470216603 KGGSSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A485_30min_R1 1 KGGSSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 35 2 H7C2H0 H7C2H0 CHD3 1 0 KGGSSDEGPEPEAEES(0.991)DLDS(0.005)GS(0.001)VHS(0.001)AS(0.001)GRPDGPVR 96.886 4.47E-05 376580000 47376 43420 38470 27878 58904 47308 59610 62531 41406 51056 TRUE FALSE FALSE 57914.62775 48497.5913 52701.65387 29400.90455 53039.31094 49784.97373 46873.83653 47195.17421 49715.8044 38328.67882 1.510999845 1.265308192 1.374992708 0.767073258 1.383802223 1.29889616 1.222944228 1.231327968 1.297091524 1 15.22613665 -13.99998953 0.033329263 1.44E-08 1.925932027 0.154906288 0.184113183 2817.81097 7.037580062 332.9948776 121.9538184 1.00E-14 13.99998953 1.925932013 KGGSYSQAASS(ph)DSAQGSDVSLTACKV ddPTM_HeLa_A485_30min_R1 1 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGS(0.007)YS(0.005)QAAS(0.098)S(0.823)DS(0.067)AQGSDVSLTACKV 186.17 2.09E-20 1261600000 57553 40530 29825 77311 48719 56367 65858 65789 51001 144650 TRUE FALSE FALSE 70355.46629 45269.63094 40858.50862 81534.30417 43868.3653 59318.28896 51786.90029 49654.1446 61236.43289 108591.4171 0.647891594 0.416880377 0.376259098 0.750835622 0.403976359 0.546252094 0.476896809 0.457256622 0.563915957 1 16.72855055 -8.12838404 6.874682702 0.999999574 0.506810384 0.640339663 0.109575323 2.418519923 129.5210804 0.101308895 0.026239389 7.44E-09 8.12838404 -0.493189191 KGGSYSQAASS(ph)DSAQGSDVSLTACKV ddPTM_HeLa_A486_30min_R1 2 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGS(0.007)YS(0.005)QAAS(0.225)S(0.759)DS(0.004)AQGSDVSLTACKV;KGGSYSQAAS(0.108)S(0.878)DS(0.014)AQGSDVSLTACKV ; 187.69 1.79E-20 1715370000 246270 309650 202162 95737 403760 404670 382430 377650 398260 554630 TRUE FALSE FALSE 229007.7447 285112.2063 280444.5405 222880.5743 353116.6559 354745.9298 286741.9691 291667.339 432781.4975 415747.038 0.550834339 0.685782893 0.674555715 0.536096602 0.849354592 0.853273499 0.689702975 0.701550011 1.040973135 1 18.66534646 -6.635533859 0.203628572 1.081947043 0.456215478 0.576775102 0.106550121 3.291237811 0.4365925 0.392803279 0.711091555 2.31E-07 6.635533859 -0.625731566 KGGSYSQAASSDS(ph)AQGSDVSLTACK ddPTM_HeLa_A486_30min_R1 1 KGGSYSQAASSDSAQGSDVSLTACK 25 1 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGSYSQAASS(0.01)DS(0.989)AQGSDVSLTACK 145.29 2.81E-09 111000000 85352 97808 49414 24557 100960 124920 96004 94548 118670 159570 TRUE FALSE FALSE 79369.26556 90057.33787 68548.42415 57169.93704 88296.65539 109508.6405 71982.78377 73021.48437 128956.4111 119612.6334 0.663552531 0.752908245 0.573086824 0.47795902 0.738188374 0.915527377 0.601799172 0.610483043 1.078116981 1 16.86801025 -7.763234932 24.99974756 1.039058671 0.668666077 0.631738073 0.113714104 32.47880752 452145.0415 0.099646659 0.030836402 1.72E-08 7.763234932 -0.370392594 KGGSYSQAASSDSAQGS(ph)DVS(ph)LTACKV ddPTM_HeLa_A485_30min_R1 2 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 2 0 KGGSYSQAASS(0.001)DS(0.003)AQGS(0.996)DVS(0.997)LT(0.003)ACKV;KGGSYSQAASSDSAQGS(1)DVS(1)LTACKV ; 171.03 2.08E-13 1518310000 847400 480040 347170 1199740 569130 700240 1207790 873770 620600 2337530 TRUE FALSE FALSE 1035901.207 536176.5022 475602.6299 1265278.758 512465.4189 736903.4836 949735.7998 659476.5375 745148.7275 1754826.79 0.590315359 0.305543832 0.271025398 0.721027719 0.29203191 0.41992947 0.541213415 0.375807197 0.424628078 1 20.74289721 -10.88272539 2.337655861 1.301096204 0.433857226 0.605405287 0.136093098 8950820.281 4637463.543 14885125.06 0.033709489 1.31E-11 10.88272539 -0.867238978 KGGSYSQAASSDSAQGS(ph)DVS(ph)LTACKV ddPTM_HeLa_A486_30min_R1 2 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 2 0 KGGSYSQAASSDSAQGS(1)DVS(1)LTACKV;KGGSYSQAASSDSAQGS(1)DVS(0.922)LT(0.078)ACKV ; 173.7 1.33E-13 1177300000 747840 918140 461600 353960 998060 1134710 1184550 1066020 1076110 1856950 TRUE FALSE FALSE 695420.2778 845383.2426 640343.8821 824036.7681 872874.0083 994721.0171 888163.0611 823310.5171 1169388.081 1391957.633 0.499598739 0.607334033 0.460031158 0.591998455 0.627083747 0.714620182 0.638067596 0.591476707 0.840103214 1 20.40868387 -10.47462561 0.145385161 1.500284371 0.406911802 0.805266878 0.066968858 15.68512337 0.395295251 3.271134241 0.487937061 3.35E-11 10.47462561 -1.093372569 KGGSYSQAASSDSAQGS(ph)DVSLTACKV ddPTM_HeLa_A485_30min_R1 1 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGSYSQAASSDSAQGS(1)DVSLTACKV 273.6 1.65E-62 617820000 723090 570790 421870 945390 521030 749360 984760 785190 627920 1925100 TRUE FALSE FALSE 883938.8759 637538.9253 577937.2685 997034.2618 469154.4238 788595.3309 774357.9813 592620.9214 753937.7844 1445207.999 0.611634364 0.441139909 0.399899024 0.689889803 0.324627614 0.545662169 0.53581075 0.410059259 0.521681159 1 20.46284571 -8.05764499 20.94943434 1.000000001 0.492029324 0.686173467 0.102013518 1513.636842 550088.4646 0.092599554 0.023909102 8.76E-09 8.05764499 -0.507970677 KGGSYSQAASSDSAQGS(ph)DVSLTACKV ddPTM_HeLa_A486_30min_R1 2 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGSYSQAASSDSAQGS(1)DVSLTACKV;KGGSYSQAASSDSAQGS(1)DVSLTACKV ; 231.41 5.52E-39 1012690000 384120 419110 242598 138889 497320 535810 449740 475020 494870 781080 TRUE FALSE FALSE 357195.1716 385898.1972 336538.4426 323340.6111 434941.4883 469707.2099 337210.2951 366868.3156 537765.7301 585492.484 0.610076442 0.659100173 0.574795496 0.552254076 0.742864341 0.802242937 0.575942996 0.626597823 0.918484429 1 19.15929113 -7.839112826 4.170913005 0.992774368 0.644161695 0.745547106 0.074423931 0.110902772 3.403907404 0.076392501 0.020422922 1.45E-08 7.839112826 -0.348612673 KGGSYSQAASSDSAQGSDVS(ph)LTACKV ddPTM_HeLa_A485_30min_R1 2 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGSYSQAASSDSAQGS(0.012)DVS(0.974)LT(0.014)ACKV;KGGSYSQAASSDSAQGS(0.003)DVS(0.992)LT(0.005)ACKV ; 207.7 1.12E-28 1030740000 815520 482320 344230 945290 572250 611890 905880 738760 548090 1827570 TRUE FALSE FALSE 996929.6105 538723.1284 471575.0016 996928.7991 515274.7807 643927.6142 712331.3376 557577.9517 658086.6356 1371990.433 0.726630147 0.392658079 0.343715955 0.726629556 0.375567328 0.469338269 0.519195557 0.406400758 0.479658327 1 20.38783899 -10.27422472 3.42230596 1.001681797 0.48684963 0.583578803 0.128299961 92164912.43 140696247.6 1619218.254 0.030632243 5.32E-11 10.27422472 -0.514832167 KGGSYSQAASSDSAQGSDVS(ph)LTACKV ddPTM_HeLa_A486_30min_R1 1 KGGSYSQAASSDSAQGSDVSLTACKV 26 2 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42 A0A140T913 HLA-A 1 0 KGGSYSQAASSDSAQGSDVS(0.964)LT(0.036)ACKV 274.22 7.82E-76 773820000 633190 749550 471220 262330 782650 836490 897480 850270 767280 1196000 TRUE FALSE FALSE 588806.6508 690152.9282 653689.0037 610717.4974 684482.7391 733292.3686 672921.0114 656682.0823 833788.4482 896513.8153 0.65677365 0.769818509 0.729145488 0.681213705 0.763493799 0.817937611 0.750597481 0.732484063 0.930034132 1 19.77396629 -7.857467894 3.597704261 0.9971202 0.739910495 0.819100994 0.043223774 0.089457974 2.078024517 0.042537617 0.01141437 1.39E-08 7.857467894 -0.257209705 KGGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A485_30min_R1 3 KGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 39 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KGGSYVFQSDEGPEPEAEES(0.999)DLDSGSVHSASGRPDGPVR;KGGSYVFQSDEGPEPEAEES(0.976)DLDS(0.023)GS(0.001)VHSASGRPDGPVR;KGGSYVFQSDEGPEPEAEES(0.993)DLDS(0.004)GS(0.001)VHS(0.001)AS(0.001)GRPDGPVR ;; 167.03 3.45E-15 651750000 475450 634830 559940 280879 737990 706890 655300 799120 648690 495329 TRUE FALSE FALSE 581212.2122 709067.8462 767085.107 296222.7085 664513.1244 743901.6673 515289.8017 603134.567 778876.1329 371852.5962 1.563017761 1.906851945 2.062874147 0.796613259 1.78703371 2.000528368 1.385736733 1.621972183 2.094583017 1 18.50437132 -10.23052322 4.565988014 0.999790614 1.682918933 0.238851372 0.369816268 0.000786503 0.000132544 0.357274341 0.086625628 5.88E-11 10.23052322 0.683128319 KGGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A486_30min_R1 1 KGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 39 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KGGSYVFQSDEGPEPEAEES(0.823)DLDS(0.116)GS(0.018)VHS(0.021)AS(0.021)GRPDGPVR 108.68 9.87E-06 217990000 122660 126310 91684 11185 142830 107240 146010 127620 97570 74197 TRUE FALSE FALSE 114062.1674 116300.7356 127186.5002 26039.24526 124914.9296 94009.81914 109476.7537 98563.71193 106027.4462 55617.58826 2.050829081 2.091078366 2.286803584 0.468183646 2.245960918 1.690289387 1.968383691 1.772168032 1.906365405 1 15.76325357 -10.89742173 2.400795845 0.533532653 1.822442773 0.205448192 0.490068934 8386856.384 4563664.554 22127213.62 0.126362996 1.27E-11 10.89742173 1.28891012 KGHAVGDIPGVR ddPTM_HeLa_A485_30min_R1 1 KGHAVGDIPGVR 12 1 P62266;D6RD47 P62266 RPS23 40S ribosomal protein S23 0 0 50.145 0.036161 8022600 4336.2 6253 5076.5 4149.9 7585.1 6276.2 6426.2 8447.4 4950 6261.8 FALSE FALSE TRUE 5300.77273 6984.233956 6954.508601 4376.598529 6829.900811 6604.812127 5053.189873 6375.661905 5943.419596 4700.8485 1.127620414 1.485739001 1.479415599 0.931023097 1.452908089 1.405025524 1.074952718 1.356278958 1.264329109 1 12.19870547 -12.85137997 0.273655599 1.52E-08 1.31432763 0.18725726 0.178987222 183.9063017 3.18457124 103.2779605 0.217052643 1.41E-13 12.85137997 1.314327615 KGLEFPMTDLDMLS(ph)PIHT(ph)PQR ddPTM_HeLa_A485_30min_R1 2 KGLEFPMTDLDMLSPIHTPQR 21 1 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 2 0 KGLEFPMTDLDMLS(1)PIHT(1)PQR;KGLEFPMTDLDMLS(1)PIHT(1)PQR ; 168.72 6.26E-14 112866000 99933 118285 109390 106625 156813 136016 144729 181976 111540 135145 TRUE FALSE FALSE 122162.7511 132117.4018 149857.9131 112449.6538 141200.1471 143137.5874 113806.4668 137346.1007 133925.0549 101455.8387 1.20409779 1.302215856 1.477075298 1.108360596 1.391739982 1.410836373 1.121734031 1.353752554 1.320032998 1 16.63049237 -10.36512604 3.064423705 0.996590267 1.301036799 0.376461114 0.115362272 26354185 33789404.48 803095.617 0.027847353 4.31E-11 10.36512604 0.304446532 KGLEFPMTDLDMLS(ph)PIHT(ph)PQR ddPTM_HeLa_A486_30min_R1 3 KGLEFPMTDLDMLSPIHTPQR 21 1 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 2 0 KGLEFPMTDLDMLS(1)PIHT(1)PQR;KGLEFPMTDLDMLS(1)PIHT(1)PQR;KGLEFPMTDLDMLS(1)PIHT(1)PQR ;; 163.94 9.34E-14 163146000 271042 266100 194059 107298 332904 256132 304070 327824 225902 297783 TRUE FALSE FALSE 252043.3555 245013.2669 269203.8419 249795.1665 291148.0761 224533.038 227988.4699 253185.6315 245483.3672 223216.1986 1.129144556 1.097650029 1.206022877 1.119072756 1.304332203 1.00589939 1.021379592 1.134261909 1.099756061 1 17.7680822 -6.2990271 24.99995496 1.058720774 1.166189731 0.443535373 0.066319715 612.5767141 407428.8942 0.02365878 0.020865507 5.02E-07 6.2990271 0.107468958 KGLEFPMTDLDMLS(ph)PIHTPQR ddPTM_HeLa_A485_30min_R1 2 KGLEFPMTDLDMLSPIHTPQR 21 1 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 KGLEFPMTDLDMLS(1)PIHTPQR;KGLEFPMTDLDMLS(1)PIHTPQR ; 250.45 3.16E-47 559710000 261166 366925 308615 253656 393652 394926 446189 531957 282480 302181 TRUE FALSE FALSE 319261.4757 409833.6869 422784.531 267512.585 354458.6247 415603.7147 350857.0751 401493.7117 339171.1449 226852.8379 1.407350592 1.806605951 1.863695138 1.179234024 1.562504697 1.832041065 1.546628547 1.769842138 1.495115283 1 17.79139718 -8.028215263 20.74311295 0.999999992 1.623730516 0.457491368 0.20244976 275.3798925 202453.1587 0.19643515 0.050719329 9.37E-09 8.028215263 0.623730524 KGLEFPMTDLDMLS(ph)PIHTPQR ddPTM_HeLa_A486_30min_R1 2 KGLEFPMTDLDMLSPIHTPQR 21 1 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 KGLEFPMTDLDMLS(1)PIHTPQR;KGLEFPMTDLDMLS(1)PIHTPQR ; 239.21 2.09E-46 327520000 475620 475610 376030 188803 602530 429280 512740 567250 373810 549710 TRUE FALSE FALSE 442281.4941 437920.9315 521638.8864 439542.9256 526955.069 376319.7982 384447.0288 438099.558 406212.1518 412059.038 1.073344966 1.062762592 1.265932399 1.066698907 1.278833906 0.913266701 0.932990162 1.06319609 0.985810562 1 18.65249153 -6.275906235 24.9391463 0.980123549 1.146561796 0.5294178 0.080328215 652.2813794 1124452.891 0.028083483 0.024873796 5.30E-07 6.275906235 0.166438247 KGLEFPMTDLDMLSPIHT(ph)PQR ddPTM_HeLa_A485_30min_R1 2 KGLEFPMTDLDMLSPIHTPQR 21 1 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 KGLEFPMTDLDMLS(0.004)PIHT(0.996)PQR;KGLEFPMTDLDMLSPIHT(1)PQR ; 87.439 0.0011102 225108000 212990 242810 212890 212076 265920 243596 276520 262950 223560 278290 TRUE FALSE FALSE 260368.8907 271204.5173 291646.8701 223661.1749 239444.0711 256350.3099 217439.243 198461.1002 268426.4414 208917.4245 1.246276567 1.298142163 1.395991123 1.070572143 1.146118241 1.227041308 1.040790367 0.949949965 1.28484468 1 17.6725733 -5.269974244 24.85961186 1.105077077 1.311937174 0.480216054 0.100434916 493.8278488 1438378.283 0.02817663 0.042533019 5.37E-06 5.269974244 0.206860097 KGLEFPMTDLDMLSPIHT(ph)PQR ddPTM_HeLa_A486_30min_R1 2 KGLEFPMTDLDMLSPIHTPQR 21 1 O60784-4;O60784;O60784-2;V9GYF4;B0QY02;B0QY01 O60784-4 TOM1 Target of Myb protein 1 1 0 KGLEFPMTDLDMLSPIHT(1)PQR;KGLEFPMTDLDMLSPIHT(1)PQR ; 95.652 0.00062376 187467000 305180 307670 252230 99449 351930 299220 337600 339320 273550 331320 TRUE FALSE FALSE 283788.458 283289.1087 349900.211 231522.2979 307787.6578 262305.2786 253128.9092 262064.2433 297261.5343 248355.3155 1.142671166 1.140660542 1.408869427 0.932222036 1.239303686 1.056169376 1.019220824 1.05519885 1.196920363 1 17.9220461 -5.271768493 24.99965636 1.077791598 1.221726404 0.306148039 0.109440523 903.6172333 2187032.554 0.030009809 0.045050662 5.35E-06 5.271768493 0.143934806 KGLIAAICAGPTALLAHEIGFGSK ddPTM_HeLa_A486_30min_R1 2 KGLIAAICAGPTALLAHEIGFGSK 24 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 247.39 1.67E-51 87489000 135505 112435 82565 44379 123734 115590 154683 137768 105201 149601 FALSE FALSE TRUE 126006.7992 103525.2411 114536.3792 103316.5548 108214.1279 101329.681 115979.6773 106401.2339 114319.9074 112139.9359 1.12365678 0.923179065 1.021370115 0.921318119 0.964991884 0.903600312 1.034240625 0.948825528 1.019439743 1 16.77494062 -4.250806805 24.88639232 0.968913836 1.123656873 0.517548821 0.044249598 1110.483196 2599123.695 0.010282351 0.143561615 5.61E-05 4.250806805 0.154743037 KGLPLGSAVSS(ph)PVLFS(ph)PVGR ddPTM_HeLa_A485_30min_R1 2 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 KGLPLGSAVS(0.159)S(0.841)PVLFS(1)PVGR;KGLPLGSAVS(0.123)S(0.877)PVLFS(1)PVGR ; 170.82 5.78E-14 1267870000 593530 764250 672200 582440 934570 774900 868160 1010920 679020 761890 TRUE FALSE FALSE 725558.7008 853622.3894 920874.7526 614257.2224 841520.9293 815472.5658 682670.5238 762990.2849 815293.0857 571964.8445 1.268537232 1.492438561 1.610019849 1.073942268 1.471280862 1.425738966 1.193553293 1.333981087 1.42542517 1 19.12556695 -12.5946732 0.25473038 1.73E-12 1.403102058 0.349695557 0.14867446 96.67435293 1.832196843 50.92273013 0.212179699 2.54E-13 12.5946732 1.403102058 KGLPLGSAVSS(ph)PVLFS(ph)PVGR ddPTM_HeLa_A486_30min_R1 2 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 KGLPLGSAVS(0.101)S(0.899)PVLFS(1)PVGR;KGLPLGSAVS(0.142)S(0.858)PVLFS(1)PVGR ; 178.95 3.40E-19 1184740000 2047090 1844850 1347110 651760 2142270 1750940 1988740 2024690 1478750 2026030 TRUE FALSE FALSE 1903599.562 1698657.367 1868747.069 1517330.218 1873566.521 1534926.825 1491136.217 1563712.286 1606929.241 1518698.901 1.253441061 1.118495158 1.230492146 0.999098779 1.233665554 1.010685413 0.98185112 1.02963944 1.058096006 1 20.53440444 -5.161076153 0.439981116 1.001949274 1.281309119 0.486701225 0.074071981 2.169499377 0.57503271 0.060682701 0.294896221 6.90E-06 5.161076153 0.279359845 KGLPLGSAVSSPVLFS(ph)PVGR ddPTM_HeLa_A485_30min_R1 2 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 KGLPLGSAVSSPVLFS(1)PVGR;KGLPLGSAVSSPVLFS(1)PVGR ; 169.13 9.33E-14 2098330000 812180 970180 895110 763760 1109660 988980 1244360 1252060 840830 969820 TRUE FALSE FALSE 992846.639 1083634.112 1226248.438 805482.2749 999178.3541 1040761.464 978492.3205 944990.3218 1009576.868 728061.7222 1.363684711 1.488382205 1.684264397 1.106337897 1.372381384 1.429496198 1.343968912 1.297953584 1.386663847 1 19.47370124 -12.92187831 0.1728254 5.85E-15 1.483805656 0.439273752 0.134740931 84.74842722 1.127988712 30.19065211 0.497803235 1.20E-13 12.92187831 1.483805656 KGLPLGSAVSSPVLFS(ph)PVGR ddPTM_HeLa_A486_30min_R1 2 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 KGLPLGSAVSSPVLFS(1)PVGR;KGLPLGSAVSSPVLFS(1)PVGR ; 220.13 1.46E-35 2722900000 785800 737470 603350 253340 901690 681440 763940 799710 595830 823400 TRUE FALSE FALSE 730719.4779 679030.1914 836983.2783 589788.3231 788591.6323 597370.8612 572794.1319 617633.4905 647477.0241 617215.2806 1.183897257 1.100151297 1.356063767 0.955563386 1.277660578 0.967848464 0.928029733 1.000677576 1.049029479 1 19.23541425 -6.280651327 24.89697463 0.985341424 1.168432629 0.448651326 0.102687819 728.713892 944345.5083 0.034371849 0.030358142 5.24E-07 6.280651327 0.183091205 KGLTPSQIGVILR ddPTM_HeLa_A486_30min_R1 2 KGLTPSQIGVILR 13 1 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 0 0 ; ; 158.31 8.02E-07 0 96634 88616 67156 29977 115712 72225 93065 95986 65892 96535 FALSE FALSE TRUE 89860.45562 81593.74543 93160.6017 69787.97095 101198.322 63314.61383 69779.15266 74132.08316 71603.57161 72362.00766 1.241818166 1.127577137 1.287424226 0.96442834 1.39850075 0.874970387 0.964306477 1.024461393 0.989518864 1 16.14294482 -6.28074776 24.99107864 0.971783702 1.191037551 0.522459908 0.111177069 682.1449614 882906.1567 0.0367725 0.032478696 5.24E-07 6.28074776 0.21925385 KGNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_A485_30min_R1 4 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK ;;; 152.88 6.20E-10 2096660000 1730890 688570 423038 5123800 988690 970390 2049070 1062410 712390 6250700 TRUE FALSE FALSE 2115920.509 769092.2717 579537.3603 5403700.22 890252.5521 1021198.12 1611269.455 801852.2817 855360.1386 4692515.526 0.450913907 0.163897651 0.123502492 1.151557238 0.189717551 0.217622747 0.343370085 0.170878983 0.182281792 1 22.16193009 -10.50894524 3.777848748 1.009302059 0.333581591 0.323193552 0.28972052 828572165.6 896684756.7 76368689.91 0.073429678 3.10E-11 10.50894524 -0.675720468 KGNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_A486_30min_R1 7 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK;KGNAEGS(1)S(1)DEEGKLVIDEPAK ;;;;;; 164.39 5.88E-13 3590880000 3321020 2781310 632113 3165240 1385156 4977940 6443670 4752720 2332710 10246250 TRUE FALSE FALSE 3088233.648 2560908.866 876884.0822 7368838.682 1211416.818 4363812.375 4831395.612 3670629.407 2534911.181 7680522.308 0.402086411 0.333428999 0.11416985 0.959418954 0.157725838 0.568166096 0.62904519 0.477914035 0.330044114 1 22.87277299 -14 0.23298837 3.978685823 0.387210111 0.340401545 0.231857418 189.5819276 1.897049297 267.2492721 0.38276929 1.00E-14 14 -3.591475712 KGNAEGS(ph)S(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_A485_30min_R1 2 KGNAEGSSDEEGKLVIDEPAKEK 23 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 KGNAEGS(1)S(1)DEEGKLVIDEPAKEK;KGNAEGS(1)S(1)DEEGKLVIDEPAKEK ; 116.28 5.04E-05 4039570000 1056030 422570 273470 3406260 841490 850890 2000660 1366290 461380 4758500 TRUE FALSE FALSE 1290940.23 471985.8856 374637.933 3592335.359 757708.3009 895441.2847 1573202.647 1031205.235 553974.734 3572293.524 0.361375744 0.132124049 0.104873222 1.005610355 0.212106955 0.250662853 0.440390085 0.288667554 0.155075368 1 21.7684192 -10.83894009 2.435654025 1.270695101 0.331973336 0.399045215 0.247399958 20355140.5 12240543.68 32131781.34 0.067192502 1.45E-11 10.83894009 -0.938721765 KGNAEGS(ph)SDEEGKLVIDEPAKEK ddPTM_HeLa_A486_30min_R1 1 KGNAEGSSDEEGKLVIDEPAKEK 23 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 KGNAEGS(0.635)S(0.365)DEEGKLVIDEPAKEK 209.18 2.41E-28 506850000 297650 223640 45604 288170 135280 411430 645120 513170 176430 844920 TRUE FALSE FALSE 276786.2721 205917.9519 63263.09012 670874.3233 118311.921 360671.9497 483704.1526 396332.3934 191723.0945 633346.5325 0.437021848 0.325126832 0.099887008 1.059253172 0.186804403 0.569470158 0.763727482 0.625774948 0.302714367 1 19.27263555 -14 0.104359213 2.507165177 0.190836196 0.24900876 0.270030779 256.9540803 1.803568021 85.00467433 3.96071438 1.00E-14 14 -2.316328981 KGNAEGSS(ph)DEEGKLVIDEPAK ddPTM_HeLa_A485_30min_R1 1 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 KGNAEGS(0.173)S(0.827)DEEGKLVIDEPAK 95.366 0.00033789 783650000 696510 313570 167590 1590900 348450 315420 631550 407420 291000 1789800 TRUE FALSE FALSE 851446.2466 350239.2838 229588.515 1677806.839 313757.0945 331934.9035 496614.1832 307499.6062 349401.0308 1343635.799 0.633688271 0.260665341 0.170871091 1.248706562 0.233513497 0.247042319 0.369604757 0.228856366 0.260041472 1 20.35771071 -10.86728832 7.211035447 1.06586252 0.403477322 0.251062499 0.30781224 0.16619758 0.003058691 0.151975144 0.072884633 1.36E-11 10.86728832 -0.662385198 KGNAEGSS(ph)DEEGKLVIDEPAK ddPTM_HeLa_A486_30min_R1 2 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 KGNAEGS(0.025)S(0.975)DEEGKLVIDEPAK;KGNAEGS(0.1)S(0.9)DEEGKLVIDEPAK ; 267.48 9.14E-60 1429600000 1403410 1193130 246501 864830 614981 1937900 2154140 1693320 975300 3133190 TRUE FALSE FALSE 1305038.206 1098582.033 341952.7887 2013367.946 537844.3485 1698821.601 1615151.388 1307788.001 1059839.789 2348618.83 0.555661987 0.467756632 0.145597397 0.857256154 0.229004529 0.723327932 0.687702648 0.556832801 0.451260875 1 21.16338116 -13.99999999 0.18046858 2.942900374 0.422777296 0.337385776 0.203672214 152.5936067 1.469772927 106.4597602 0.613360414 1.00E-14 13.99999999 -2.520123078 KGNAEGSS(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_A485_30min_R1 1 KGNAEGSSDEEGKLVIDEPAKEK 23 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 KGNAEGS(0.205)S(0.795)DEEGKLVIDEPAKEK 150.11 7.81E-09 565260000 171320 73000 38973 451760 145740 141850 315720 238100 93583 677740 TRUE FALSE FALSE 209429.543 81536.71498 53390.7345 476438.5049 131229.6139 149277.0467 248263.8428 179705.6017 112364.2497 508791.8909 0.411621228 0.160255532 0.104936292 0.936411357 0.257923949 0.293395098 0.487947719 0.353200601 0.220845206 1 18.95671615 -10.95022702 2.717537396 1.467989997 0.360990632 0.430166464 0.221481896 127400860.5 63972169.96 376511217 0.056371659 1.12E-11 10.95022702 -1.106999365 KGNS(ph)PNSEPPTPK ddPTM_HeLa_A485_30min_R1 4 KGNSPNSEPPTPK 13 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 KGNS(0.988)PNS(0.012)EPPTPK;KGNS(0.991)PNS(0.009)EPPTPK;KGNS(0.975)PNS(0.025)EPPTPK;KGNS(0.999)PNS(0.001)EPPTPK ;;; 132.59 9.86E-06 2630120000 2840200 2185330 1447960 3935950 3003200 2879100 4591280 4289340 2341270 5483720 TRUE FALSE FALSE 3471992.691 2440885.334 1983620.659 4150960.982 2704190.863 3029845.224 3610315.521 3237372.64 2811141.414 4116729.524 0.843386157 0.592918558 0.481843815 1.008315207 0.656878439 0.735983553 0.876986331 0.786394302 0.682857933 1 21.97306723 -14 0.138458106 1.877131711 0.645152779 0.230042659 0.142197899 207.5113626 1.766235625 50.43177115 0.909907593 1.00E-14 14 -1.231978932 KGNS(ph)PNSEPPTPK ddPTM_HeLa_A486_30min_R1 5 KGNSPNSEPPTPK 13 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 KGNS(0.999)PNS(0.001)EPPTPK;KGNS(0.942)PNS(0.058)EPPTPK;KGNS(0.995)PNS(0.005)EPPTPK;KGNS(0.976)PNS(0.024)EPPTPK;KGNS(0.998)PNS(0.002)EPPTPK ;;;; 143.67 6.02E-08 2811254000 2428340 2203301 956418 1134522 1977795 2581570 3253480 2960660 1765847 3212060 TRUE FALSE FALSE 2258125.906 2028703.404 1326768.663 2641224.552 1729721.509 2263082.141 2439424.892 2286582.349 1918912.04 2407739.269 0.937861477 0.842576034 0.55104333 1.096972827 0.718400672 0.939919937 1.013159906 0.949680216 0.796976676 1 21.19924774 -6.446587791 23.86922086 0.941586574 0.829473368 0.130918793 0.142424876 170.8654481 53457.39672 0.049254992 0.043438792 3.58E-07 6.446587791 -0.112113205 KGPAAPPPT(ph)PVKPPR ddPTM_HeLa_A485_30min_R1 2 KGPAAPPPTPVKPPR 15 2 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 1 0 KGPAAPPPT(1)PVKPPR;KGPAAPPPT(1)PVKPPR ; 100.67 0.00054476 6043300000 3221760 2678160 1874420 3043630 3519800 3481200 4672300 4654000 2306060 4389800 TRUE FALSE FALSE 3938429.397 2991347.515 2567845.959 3209895.8 3169356.353 3663470.249 3674024.936 3512599.203 2768865.09 3295503.648 1.195091803 0.907705721 0.779196819 0.974022833 0.961721391 1.111657167 1.114859921 1.06587629 0.840194818 1 21.65206754 -6.064295061 12.12437231 1.036253769 0.949409757 0.056238388 0.120071946 3.095241246 580.2209154 0.040887767 0.040907261 8.62E-07 6.064295061 -0.086844011 KGPAAPPPT(ph)PVKPPR ddPTM_HeLa_A486_30min_R1 1 KGPAAPPPTPVKPPR 15 2 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 1 0 KGPAAPPPT(1)PVKPPR 88.264 0.0012848 2834400000 688100 744730 422270 292820 666510 718160 882080 889550 503630 785460 TRUE FALSE FALSE 639867.7434 685714.8825 585784.2528 681699.7583 582910.1008 629560.7209 661374.2543 687018.8837 547285.0539 588775.7035 1.086776746 1.164645345 0.994919201 1.157825899 0.990037628 1.069270891 1.123304257 1.166860113 0.929530636 1 19.16735861 -7.670698451 0.010863181 5.02E-07 2.114357367 0.123786918 0.075936987 2181.698332 21.65709195 2118.444876 2092.872151 2.13E-08 7.670698451 2.114356865 KGPAS(ph)PTRPAAPR ddPTM_HeLa_A485_30min_R1 2 KGPASPTRPAAPR 13 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 KGPAS(0.891)PT(0.109)RPAAPR;KGPAS(0.963)PT(0.037)RPAAPR ; 170.47 1.94E-12 1435600000 477710 347610 382340 706460 516470 375070 564170 376960 471480 860970 TRUE FALSE FALSE 583974.9414 388259.9657 523783.4765 745052.1209 465048.4334 394708.0852 443630.4707 284509.9689 566101.7113 646346.024 0.903502025 0.600699859 0.810376265 1.152714016 0.71950382 0.610676125 0.686366829 0.440182129 0.875849298 1 19.3019472 -5.977122193 24.99729825 0.683108309 0.855323147 0.104497056 0.189593084 447.1508007 488574.2621 0.05852271 0.066354916 1.05E-06 5.977122193 0.172214838 KGPAS(ph)PTRPAAPR ddPTM_HeLa_A486_30min_R1 3 KGPASPTRPAAPR 13 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 KGPAS(0.966)PT(0.034)RPAAPR;KGPAS(0.77)PT(0.23)RPAAPR;KGPAS(0.587)PT(0.413)RPAAPR ;; 169.15 2.27E-12 2093530000 840830 1009640 580556 328116 857130 1008050 987200 1024970 916280 1029280 TRUE FALSE FALSE 781892.1591 929632.4494 805362.831 763870.6301 749620.763 883687.0401 740192.1185 791606.7059 995703.8882 771541.5885 1.013415441 1.204902578 1.043835929 0.990057622 0.971588277 1.145352439 0.959367751 1.026006527 1.290538194 1 19.5573844 -9.436475521 7.083180282 1 1.066950159 0.039754156 0.103356827 0 0 0.098547533 0.023901288 3.66E-10 9.436475521 0.066950159 KGPAS(ph)PTRPAAPRPAEAPLLDL ddPTM_HeLa_A485_30min_R1 3 KGPASPTRPAAPRPAEAPLLDL 22 3 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 KGPAS(0.959)PT(0.041)RPAAPRPAEAPLLDL;KGPAS(0.99)PT(0.01)RPAAPRPAEAPLLDL;KGPAS(0.75)PT(0.25)RPAAPRPAEAPLLDL ;; 168.17 6.41E-14 11285360000 2214830 2336530 1991000 2249030 2930110 2829480 3466160 3999660 2325030 3165640 TRUE FALSE FALSE 2707511.292 2609766.858 2727553.752 2371888.814 2638377.96 2977627.198 2725586.6 3018737.114 2791642.195 2376504.207 1.139283189 1.098153687 1.147716778 0.998057907 1.110192842 1.252944215 1.146889028 1.270242697 1.174684306 1 21.18040953 -6.028582176 23.06099065 1.184141686 1.093984769 0.155321752 0.078543589 390.2581027 314871.3857 0.024520229 0.024585177 9.36E-07 6.028582176 -0.090156917 KGPAS(ph)PTRPAAPRPAEAPLLDL ddPTM_HeLa_A486_30min_R1 4 KGPASPTRPAAPRPAEAPLLDL 22 3 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 KGPAS(0.988)PT(0.012)RPAAPRPAEAPLLDL;KGPAS(0.969)PT(0.031)RPAAPRPAEAPLLDL;KGPAS(0.764)PT(0.236)RPAAPRPAEAPLLDL;KGPAS(0.969)PT(0.031)RPAAPRPAEAPLLDL ;;; 168.17 3.60E-13 8453190000 3214440 3123340 1969210 1159200 3340650 3074000 3489340 3597200 2568130 3616450 TRUE FALSE FALSE 2989124.355 2875835.163 2731740.849 2698676.183 2921634.527 2694761.134 2616270.226 2778196.086 2790737.576 2710867.381 1.102644997 1.060854243 1.007699922 0.995502842 1.07774897 0.994058637 0.96510447 1.024836591 1.029462967 1 21.37032311 -4.535715784 2.705665512 1.012059742 1.101724286 0.523537628 0.027995763 0.247275801 3.306310322 0.007746882 0.037400221 2.91E-05 4.535715784 0.089664544 KGPASPT(ph)RPAAPR ddPTM_HeLa_A485_30min_R1 3 KGPASPTRPAAPR 13 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 KGPAS(0.175)PT(0.825)RPAAPR;KGPAS(0.373)PT(0.627)RPAAPR;KGPAS(0.017)PT(0.983)RPAAPR ;; 121.13 7.36E-05 808230000 312304 250664 218571 416140 323227 236187 299359 325010 256231 536590 TRUE FALSE FALSE 381774.9474 279976.9743 299429.5084 438872.6745 291045.385 248553.3861 235398.5041 245300.7879 307654.2114 402827.9882 0.947736896 0.695028604 0.743318531 1.089479101 0.722505371 0.617021144 0.584364818 0.608946734 0.763735938 1 18.6198044 -5.979926317 24.99563116 0.680835712 0.854813837 0.177815006 0.151311022 359.788695 448004.5105 0.046168068 0.052344292 1.05E-06 5.979926317 0.173978124 KGPASPT(ph)RPAAPR ddPTM_HeLa_A486_30min_R1 1 KGPASPTRPAAPR 13 2 A0A0D9SFE4 A0A0D9SFE4 DNM1 1 0 KGPAS(0.423)PT(0.577)RPAAPR 119.56 0.00010797 544580000 188480 201260 125110 52126 150930 197230 186310 194540 174360 179890 TRUE FALSE FALSE 175268.5253 185311.4246 173555.9426 121351.9623 131998.952 172897.7679 139693.2674 150247.4888 189473.6652 134844.3731 1.299783753 1.374261457 1.287083314 0.899940869 0.978898481 1.282202319 1.035959189 1.114228835 1.405128452 1 17.0409358 -5.02423897 23.69133906 1.105668711 1.335435117 0.338586653 0.140752251 423.356596 413793.0897 0.038827783 0.067797104 9.46E-06 5.02423897 0.229766406 KGPELPLVPVK(ac)R ddPTM_HeLa_A485_30min_R1 1 KGPELPLVPVKR 12 2 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 1 KGPELPLVPVK(1)R 76.357 0.02623 0 9842.2 10657 14370 16453 22395 33822 62153 117320 104340 173220 FALSE TRUE FALSE 12031.56343 11903.24345 19686.06099 17351.78573 20165.27517 35592.86762 48873.50381 88547.08605 125280.0809 130039.4419 0.092522417 0.091535639 0.151385308 0.133434791 0.155070453 0.273708247 0.375836001 0.680924839 0.963400635 1 16.98858974 -7.303799729 1.101405162 1.033605332 0.122225155 0.99049341 0.033132616 0.044262313 0.094689811 0.030013942 0.011556497 4.97E-08 7.303799729 -0.911380177 down KGPELPLVPVK(ac)R ddPTM_HeLa_A486_30min_R1 2 KGPELPLVPVKR 12 2 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 1 ; KGPELPLVPVK(1)R;KGPELPLVPVK(1)R 90.861 0.0058606 0 122185 171700 136683 78509 216971 203241 199640 224136 176927 238428 FALSE TRUE FALSE 113620.4625 158093.8667 189610.3181 182772.9196 189756.474 178167.1918 149687.9604 173105.1257 192263.1748 178724.0769 0.635731147 0.884569496 1.060910882 1.022654154 1.061728656 0.996884107 0.837536626 0.968560748 1.075754191 1 17.44737448 -4.345098834 2.829561232 0.998154537 0.602686312 0.745257448 0.06511037 0.18275003 2.235228586 0.018286157 0.150308343 4.52E-05 4.345098834 -0.395468225 KGPGQPS(ph)SPQR ddPTM_HeLa_A485_30min_R1 5 KGPGQPSSPQR 11 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.979)S(0.021)PQR;KGPGQPS(0.788)S(0.212)PQR;KGPGQPS(0.5)S(0.5)PQR;KGPGQPS(0.5)S(0.5)PQR;KGPGQPS(0.718)S(0.282)PQR ;;;; 129.37 0.00012474 7156930000 2588670 2057520 1952030 3304660 2789390 2054690 2772710 2167240 2359700 4102900 TRUE FALSE FALSE 3164510.711 2298129.066 2674167.128 3485185.208 2511668.537 2162270.391 2180297.858 1635720.992 2833270.146 3080122.538 1.027397667 0.746116116 0.868201539 1.131508622 0.815444355 0.702007912 0.707860752 0.531057116 0.919856308 1 21.55455632 -5.99248682 24.97380099 0.741039781 0.930058918 0.205850081 0.152797547 253.3318173 842067.2865 0.046664107 0.052811418 1.02E-06 5.99248682 0.189019137 KGPGQPS(ph)SPQR ddPTM_HeLa_A486_30min_R1 4 KGPGQPSSPQR 11 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.975)S(0.025)PQR;KGPGQPS(0.917)S(0.083)PQR;KGPGQPS(0.5)S(0.5)PQR;KGPGQPS(0.617)S(0.383)PQR ;;; 99.481 0.00086158 8038500000 4897400 5705800 3345260 1854420 4732720 5697900 5772800 5645200 4731140 5660700 TRUE FALSE FALSE 4554117.55 5253651.628 4640634.261 4317183.477 4139098.127 4994951.03 4328384.382 4359911.194 5141239.025 4243223.875 1.073268271 1.238127373 1.093657652 1.017430049 0.975460699 1.177159438 1.020069765 1.027499685 1.21163511 1 22.01672937 -4.987466124 24.16461896 1.061501591 1.158246559 0.175621623 0.080944161 240.7544343 464150.5358 0.020473723 0.04256766 1.03E-05 4.987466124 0.096744968 KGPGQPS(ph)SPQRLDR ddPTM_HeLa_A486_30min_R1 1 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.572)S(0.428)PQRLDR 42.059 0.034658 270310000 336120 365120 257090 155360 461610 405020 477410 522570 353800 456830 TRUE FALSE FALSE 312559.7237 336186.5615 356642.1331 361685.9315 403710.5695 355052.7503 357956.9685 403592.2186 384467.6689 342436.7945 0.912751576 0.981747776 1.041483096 1.056212233 1.178934553 1.036841706 1.04532274 1.17858894 1.122740532 1 18.3854782 -4.623981978 1.203917021 1.097322781 0.885920723 0.518526489 0.055707043 0.67055577 1.291776359 0.017787575 0.15258534 2.38E-05 4.623981978 -0.211402058 KGPGQPSS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 KGPGQPSSPQR 11 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.046)S(0.954)PQR 96.371 0.0011176 3999500000 1147900 833660 791810 1519700 1164100 892810 1201100 918930 925130 1827400 TRUE FALSE FALSE 1403246.395 931149.2851 1084733.469 1602717.363 1048198.117 939556.1511 944475.1729 693560.9767 1110795.105 1371862.811 1.02287662 0.678748106 0.790701126 1.168278162 0.764069197 0.684876172 0.688461824 0.505561468 0.809698387 1 20.38770479 -5.985339617 24.99191928 0.706042296 0.898975547 0.188261173 0.16917571 363.8857792 620321.6783 0.052066502 0.05901555 1.03E-06 5.985339617 0.192933251 KGPGQPSS(ph)PQR ddPTM_HeLa_A486_30min_R1 4 KGPGQPSSPQR 11 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.28)S(0.72)PQR;KGPGQPS(0.023)S(0.977)PQR;KGPGQPS(0.015)S(0.985)PQR;KGPGQPS(0.011)S(0.989)PQR ;;; 137.58 9.19E-06 17712500000 5056050 6097440 3299890 1890230 4955150 6013730 6227320 5952750 5145310 6277780 TRUE FALSE FALSE 4701647.004 5614256.648 4577695.782 4400550.967 4333628.882 5271817.136 4669178.67 4597438.773 5591309.614 4705783.027 0.999121077 1.193054719 0.972780886 0.935136818 0.920915575 1.120284787 0.99222141 0.97697636 1.188178372 1 22.16600337 -7.730833454 24.99969957 1.094089841 1.015528972 0.11427714 0.089294748 400.9654196 327519.9695 0.061208714 0.023129167 1.86E-08 7.730833454 -0.078560868 KGPGQPSS(ph)PQRLDR ddPTM_HeLa_A485_30min_R1 5 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.175)S(0.825)PQRLDR;KGPGQPS(0.458)S(0.542)PQRLDR;KGPGQPS(0.002)S(0.998)PQRLDR;KGPGQPS(0.398)S(0.602)PQRLDR;KGPGQPS(0.205)S(0.795)PQRLDR ;;;; 146.3 3.60E-08 32482930000 8753660 9828450 7838230 9249920 12672880 12496260 15573870 18802940 8708350 12967400 TRUE FALSE FALSE 10700881.47 10977801.73 10737917.45 9755219.708 11411123.57 13150544.85 12246385.45 14191489.48 10456035.97 9734865.827 1.099232558 1.127678791 1.103037026 1.002090823 1.17219115 1.350870683 1.257992217 1.457800214 1.074081159 1 23.21472966 -6.000433138 24.99999981 1.258949288 1.087569689 0.209663537 0.125902242 19.80255085 1143094.517 0.037265761 0.041797827 9.99E-07 6.000433138 -0.171379598 KGPGQPSS(ph)PQRLDR ddPTM_HeLa_A486_30min_R1 5 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.117)S(0.883)PQRLDR;KGPGQPS(0.018)S(0.982)PQRLDR;KGPGQPS(0.02)S(0.98)PQRLDR;KGPGQPS(0.21)S(0.79)PQRLDR;KGPGQPS(0.319)S(0.681)PQRLDR ;;;; 153.72 1.64E-08 18019660000 6901960 7333780 5124100 3099330 8974210 7710300 9483320 9778600 6248690 9763170 TRUE FALSE FALSE 6418168.246 6752624.564 7108288.748 7215396.871 7848580.901 6759081.579 7110493.032 7552226.245 6790331.48 7318408.684 0.876989592 0.922690281 0.971288849 0.985924288 1.072443647 0.923572578 0.971590046 1.031949235 0.927842619 1 22.80309855 -4.598599558 1.924546908 0.988819033 0.873375637 0.42863696 0.0415994 0.407565217 2.521479878 0.0114696 0.066293713 2.52E-05 4.598599558 -0.115443396 KGPPTQELDRDS(ph)EEEEEEDDEDGEDEEEVPK ddPTM_HeLa_A485_30min_R1 2 KGPPTQELDRDSEEEEEEDDEDGEDEEEVPK 31 2 H0Y613;Q14687-2;Q14687-3;Q14687;H7C3B5 H0Y613 GSE1 Genetic suppressor element 1 1 0 KGPPTQELDRDS(1)EEEEEEDDEDGEDEEEVPK;KGPPTQELDRDS(1)EEEEEEDDEDGEDEEEVPK ; 343.36 9.31E-129 1065490000 303420 184262 153786 540680 302960 307940 485290 438670 225297 660990 TRUE FALSE FALSE 370914.7322 205809.838 210677.841 570215.9793 272796.2386 324063.2622 381603.827 331085.4947 270512.0414 496217.3576 0.747484397 0.414757434 0.424567657 1.14912542 0.549751504 0.653067164 0.769025551 0.667218689 0.545148285 1 18.92061268 -11.47284592 2.217548205 4.820286254 0.658469172 0.20863068 0.199940547 17782625.63 948819.8119 343189505.9 0.051724984 3.37E-12 11.47284592 -4.161817081 KGPPTQELDRDS(ph)EEEEEEDDEDGEDEEEVPK ddPTM_HeLa_A486_30min_R1 2 KGPPTQELDRDSEEEEEEDDEDGEDEEEVPK 31 2 H0Y613;Q14687-2;Q14687-3;Q14687;H7C3B5 H0Y613 GSE1 Genetic suppressor element 1 1 0 KGPPT(0.001)QELDRDS(0.999)EEEEEEDDEDGEDEEEVPK;KGPPT(0.044)QELDRDS(0.956)EEEEEEDDEDGEDEEEVPK ; 253.02 1.10E-63 1208450000 143533 134572 49445 101768 118097 176116 281777 239537 103764 290573 TRUE FALSE FALSE 133472.0779 123908.0246 68591.42818 236921.0471 103284.173 154388.5985 211273.4143 184999.6542 112758.3471 217811.6295 0.612786738 0.568876992 0.314911689 1.087733688 0.474190351 0.708817059 0.969982249 0.849356183 0.51768745 1 17.73272146 -5.246575061 24.99707888 0.784401965 0.505860349 0.320600905 0.200523946 1049.993137 1765753.617 0.053514045 0.092199138 5.67E-06 5.246575061 -0.278541616 KGPPVPPPPKHT(ph)PSK ddPTM_HeLa_A485_30min_R1 2 KGPPVPPPPKHTPSK 15 2 O00499-6;O00499-2;O00499;O00499-11 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 KGPPVPPPPKHT(0.999)PS(0.001)K;KGPPVPPPPKHT(0.954)PS(0.046)K ; 100.67 0.00036926 637420000 1440910 759510 480450 1980290 1197410 1020570 1521180 1178860 853310 2563690 TRUE FALSE FALSE 1761435.458 848328.0876 658188.4482 2088468.228 1078191.656 1074005.467 1196167.466 889742.7366 1024561.49 1924609.264 0.915217177 0.440779385 0.341985493 1.085138821 0.560213273 0.558038188 0.621511851 0.462297856 0.532347791 1 20.87613415 -11.28315697 2.105781069 2.553005776 0.60654571 0.228828239 0.212799554 31312945.46 4268763.732 231468382.8 0.057546596 5.21E-12 11.28315697 -1.946460066 KGPSS(ph)TGASGQAK ddPTM_HeLa_A485_30min_R1 2 KGPSSTGASGQAK 13 1 Q9NWH9;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 KGPS(0.169)S(0.792)T(0.038)GAS(0.001)GQAK;KGPS(0.141)S(0.827)T(0.032)GASGQAK ; 51.265 0.030141 225950000 255660 225193 100728 392270 198196 305370 300990 451520 234580 471980 TRUE FALSE FALSE 312530.685 251527.3624 137991.4788 413698.7168 178462.9103 321358.701 236681.0276 340784.012 281658.0543 354324.0721 0.882047565 0.709879408 0.389449912 1.16757158 0.503671425 0.906962654 0.667978967 0.961786226 0.794916508 1 18.43470996 -7.902187616 0.484632278 1.004736534 0.724057765 0.114798966 0.210668926 2.169686263 1.308045704 0.238121897 0.123365206 1.25E-08 7.902187616 -0.280678769 KGPST(ph)PYTK ddPTM_HeLa_A485_30min_R1 3 KGPSTPYTK 9 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 KGPS(0.118)T(0.723)PY(0.15)T(0.009)K;KGPS(0.167)T(0.833)PYTK;KGPS(0.087)T(0.913)PYTK ;; 131.06 0.00020301 8916200000 18170800 16349300 11217500 20560700 21297400 21609300 27247900 29425300 15302600 28131400 TRUE FALSE FALSE 22212831.77 18261208.41 15367320.05 21683878.98 19176956.08 22740729.53 21426163.57 22208699.04 18373691.46 21118759.7 1.051805697 0.86469133 0.727662053 1.026759113 0.908053141 1.076802324 1.014555962 1.051610007 0.870017544 1 24.33202177 KGPST(ph)PYTK ddPTM_HeLa_A486_30min_R1 4 KGPSTPYTK 9 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 KGPS(0.076)T(0.924)PYTK;KGPS(0.122)T(0.877)PY(0.001)TK;KGPS(0.121)T(0.878)PYTK;KGPS(0.105)T(0.706)PY(0.022)T(0.168)K ;;; 131.69 0.00019711 10486000000 17517800 17369800 8570440 6899470 15742300 17988400 19301430 20699200 12594860 20286100 TRUE FALSE FALSE 16289892.68 15993353.79 11889143.89 16062314.84 13767753.94 15769174.1 14472008.06 15986444.02 13686592.61 15206328.52 1.071257448 1.051756429 0.781854994 1.056291453 0.905396324 1.037013904 0.951709549 1.051302029 0.900058985 1 23.85816853 KGPTRPPRPS(ph)TPDLSK ddPTM_HeLa_A486_30min_R1 1 KGPTRPPRPSTPDLSK 16 3 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 KGPT(0.007)RPPRPS(0.497)T(0.497)PDLSK 92.492 0.00089341 567450000 831270 730920 415530 326740 723520 831080 970720 925270 587740 1141000 TRUE FALSE FALSE 773002.2657 672999.2372 576434.3443 760667.2325 632769.375 728549.7994 727835.5888 714606.2195 638685.7764 855286.1733 0.903793712 0.786870241 0.673966635 0.8893716 0.739833514 0.85181992 0.850984865 0.835517096 0.746750966 1 19.70604769 -6.369699101 22.97765865 0.846359019 0.79615252 0.098449093 0.084947074 42.72791055 9030.000612 0.029020573 0.025593746 4.27E-07 6.369699101 -0.050206499 KGPTRPPRPST(ph)PDLSK ddPTM_HeLa_A486_30min_R1 1 KGPTRPPRPSTPDLSK 16 3 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 KGPT(0.007)RPPRPS(0.393)T(0.6)PDLSK 85.77 0.0016924 482980000 994730 917050 463960 479770 891200 973970 1174100 1129200 686730 1318400 TRUE FALSE FALSE 925004.5638 844379.6182 643617.7373 1116928.806 779417.3859 853811.484 880327.7616 872105.8103 746256.3093 988264.0587 0.935989279 0.854406887 0.651260897 1.130192681 0.788673208 0.863950759 0.890781926 0.882462336 0.755118334 1 19.91453705 -10.22524346 5.032685314 1.000017364 0.86235993 0.109888256 0.118290598 2.20E-05 3.39E-06 0.10931037 0.026508316 5.95E-11 10.22524346 -0.137657433 KGQASLYGK(ac)R ddPTM_HeLa_A486_30min_R1 1 KGQASLYGKR 10 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 1 KGQASLYGK(1)R 122.33 0.010734 45514000 31473 46873 40269 21799 65283 53683 54550 62026 48893 61296 FALSE TRUE FALSE 29266.90523 43158.61277 55862.23524 50749.17366 57094.5974 47060.13727 40901.01303 47904.03382 53131.08461 45947.08263 0.636969826 0.939311275 1.215795042 1.104513513 1.242616378 1.024224708 0.890176496 1.042591413 1.156353822 1 15.48768564 -4.359628122 3.169237217 1.083344761 0.613688416 0.646399016 0.100274191 0.186561943 3.004649414 0.027583736 0.186569142 4.37E-05 4.359628122 -0.469656346 KGQGGAGAGDDEEED ddPTM_HeLa_A485_30min_R1 4 KGQGGAGAGDDEEED 15 1 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 ;;; ;;; 107.03 0.00039421 1409686000 1364082 1243718 887246 1826873 1744991 1543164 2253096 2345106 1225048 2627709 FALSE FALSE TRUE 1667517.335 1389160.001 1215475.217 1926670.446 1571253.569 1623961.681 1771703.633 1769965.077 1470903.897 1972669.506 0.845310038 0.70420311 0.616157554 0.976681822 0.796511308 0.823230489 0.898124916 0.897243594 0.745641321 1 20.91171784 -13.99999997 0.036508989 1.927404027 0.243571526 0.272014032 0.097150679 1306.911964 3.56662818 140.9920954 46.95836033 1.00E-14 13.99999997 -1.683832501 KGQGGAGAGDDEEED ddPTM_HeLa_A486_30min_R1 5 KGQGGAGAGDDEEED 15 1 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 ;;;; ;;;; 111.63 0.00029242 1552480000 1788370 1702670 927632 916930 1940690 1994980 2405900 2217200 1465615 2608800 FALSE FALSE TRUE 1663014.498 1567744.228 1286835.953 2134659.379 1697270.564 1748859.651 1803918.373 1712391.961 1592655.688 1955539.5 0.850412123 0.801693972 0.658046515 1.091596145 0.867929574 0.894310573 0.922465833 0.87566217 0.814432891 1 20.89913525 -5.245314188 24.99925877 0.914981666 0.773215199 0.402525997 0.085327802 900.9173955 1396711.259 0.022916714 0.039534438 5.68E-06 5.245314188 -0.141766467 KGRS(ph)PDELPSAGGDGGK ddPTM_HeLa_A485_30min_R1 1 KGRSPDELPSAGGDGGK 17 2 A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610;B4E2I7 A0A2R8Y5N1 DIAPH1 Protein diaphanous homolog 1 1 0 KGRS(1)PDELPSAGGDGGK 212.69 4.09E-26 547060000 278580 245060 167390 381470 414320 372920 604800 743210 271150 573150 TRUE FALSE FALSE 340549.1599 273717.6353 229314.5267 402308.7402 373068.846 392445.5146 475579.5392 560936.5822 325567.3179 430274.253 0.791469993 0.636146907 0.532949683 0.935005377 0.867048966 0.912082263 1.105293974 1.3036722 0.756650707 1 18.71489699 -5.781556546 1.190295507 1.04841746 0.657588369 0.476119251 0.15382606 0.384457703 1.151670278 0.064528659 0.09242546 1.65E-06 5.781556546 -0.390829091 KGS(ph)DALRPPVPQGEDEVPK ddPTM_HeLa_A485_30min_R1 3 KGSDALRPPVPQGEDEVPK 19 2 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 KGS(1)DALRPPVPQGEDEVPK;KGS(1)DALRPPVPQGEDEVPK;KGS(1)DALRPPVPQGEDEVPK ;; 162.47 1.09E-12 2288400000 1363770 683506 431899 2679810 999511 972857 1967670 1467470 832123 4475900 TRUE FALSE FALSE 1667135.932 763436.081 591676.4129 2826201.235 899996.1753 1023794.288 1547261.23 1107570.682 999122.4534 3360140.503 0.496150661 0.227203619 0.176086807 0.841096148 0.267844804 0.30468794 0.460475158 0.329620348 0.297345439 1 21.68009013 -10.33827841 3.053955871 1.005935417 0.376721985 0.517280807 0.180303559 25798616.7 33183250.32 1377957.165 0.045161996 4.59E-11 10.33827841 -0.629213432 KGS(ph)DALRPPVPQGEDEVPK ddPTM_HeLa_A486_30min_R1 4 KGSDALRPPVPQGEDEVPK 19 2 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 KGS(1)DALRPPVPQGEDEVPK;KGS(1)DALRPPVPQGEDEVPK;KGS(1)DALRPPVPQGEDEVPK;KGS(1)DALRPPVPQGEDEVPK ;;; 187.51 1.27E-18 3790200000 2601170 2282280 829660 1964290 1794560 3347990 4403510 3728900 1899980 5705440 TRUE FALSE FALSE 2418841.415 2101423.821 1150926.571 4572966.39 1569469.551 2934949.034 3301705.222 2879910.871 2064671.796 4276760.688 0.56557792 0.491358758 0.269111754 1.069259359 0.366976239 0.686255147 0.772010749 0.673386023 0.482765333 1 22.02808705 -14 0.136014544 2.27997864 0.457544222 0.244329964 0.212745279 206.0363706 1.735208996 72.48858844 1.398870304 1.00E-14 14 -1.822434418 KGS(ph)FSALVGR ddPTM_HeLa_A485_30min_R1 2 KGSFSALVGR 10 1 Q13619;A0A087WWN2 Q13619 CUL4A Cullin-4A 1 0 KGS(0.991)FS(0.009)ALVGR;KGS(0.795)FS(0.205)ALVGR ; 184.11 7.29E-10 1763750000 778680 677010 514016 967180 910750 853000 1238030 1463550 896710 1540380 TRUE FALSE FALSE 951894.6796 756180.4303 704171.9084 1020014.594 820072.5322 897661.761 973514.7767 1104612.068 1076671.472 1156391.615 0.823159445 0.653913796 0.608938961 0.882066751 0.709165063 0.776261043 0.841855617 0.955223173 0.931061293 1 20.14119862 -7.04597078 0.899044277 0.994590272 0.720211065 0.641975367 0.074170267 0.376684614 0.560079665 0.064169203 0.030321776 9.00E-08 7.04597078 -0.274379207 KGS(ph)FSALVGR ddPTM_HeLa_A486_30min_R1 1 KGSFSALVGR 10 1 Q13619;A0A087WWN2 Q13619 CUL4A Cullin-4A 1 0 KGS(0.92)FS(0.08)ALVGR 166.6 2.34E-07 828030000 1470500 1437200 733730 596580 1233200 1444700 1941600 1802200 1094100 2052200 TRUE FALSE FALSE 1367425.544 1323311.038 1017849.906 1388868.389 1078520.557 1266467.603 1455791.144 1391878.402 1188937.469 1538315.762 0.888910832 0.860233686 0.661665135 0.902850002 0.701104795 0.823281951 0.946353915 0.904806696 0.772882589 1 20.55292024 -6.604252059 6.948863468 0.897350803 0.79982137 0.230387431 0.089187826 0.353471473 25.05238425 0.033473071 0.025837362 2.49E-07 6.604252059 -0.097529433 KGS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_A485_30min_R1 6 KGSGSEQEGEDEEGGER 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER ;;;;; 166.85 2.49E-12 4848590000 3797970 2796850 2267710 7119970 4288940 3517230 6324630 5297650 2819600 9137550 TRUE FALSE FALSE 4642815.324 3123917.278 3106630.296 7508915.932 3861918.074 3701386.724 4973321.133 3998393.031 3385467.857 6859726.949 0.676822176 0.455399654 0.452879585 1.094637729 0.562984227 0.539582224 0.725002784 0.582879328 0.493528078 1 22.70971972 -10.65451494 2.824748289 1.039847515 0.622485673 0.287241106 0.179356036 83244198.03 76975072.86 24045398.07 0.045195407 2.22E-11 10.65451494 -0.417361842 KGS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_A486_30min_R1 5 KGSGSEQEGEDEEGGER 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER ;;;; 207.1 1.30E-25 3941930000 3558420 3415560 1661860 2932810 3184940 4341450 5948470 5229940 2694340 7211330 TRUE FALSE FALSE 3308993.134 3144898.586 2305376.698 6827729.896 2785455.127 3805846.04 4460099.89 4039196.831 2927887.561 5405566.03 0.612145539 0.58178895 0.426482016 1.263092497 0.515293886 0.704060596 0.825093961 0.747229209 0.541643103 1 22.36601426 -11.66971511 2.121906791 8.979195353 0.697456784 0.148730033 0.221427542 11208704.6 281893.2531 434888810.9 0.057926709 2.14E-12 11.66971511 -8.281738569 KGS(ph)ITEYTAAEEK ddPTM_HeLa_A485_30min_R1 4 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.996)IT(0.004)EYTAAEEK;KGS(0.974)IT(0.026)EYTAAEEK;KGS(0.499)IT(0.499)EYT(0.002)AAEEK;KGS(0.985)IT(0.015)EYTAAEEK ;;; 268.55 3.07E-42 3572560000 6165610 3958680 2254860 10342970 4472420 5147350 8786950 6365320 3885570 14047160 TRUE FALSE FALSE 7537128.673 4421613.19 3089026.547 10907980.26 4027130.161 5416857.287 6909546.35 4804215.29 4665368.258 10545461.53 0.714727246 0.419290628 0.292924737 1.034376753 0.38188278 0.513667161 0.655215168 0.455571838 0.442405318 1 23.3301189 -10.75930986 2.736482455 1.10014485 0.543620998 0.314026126 0.201477599 66093704.49 53729122.33 44690532.03 0.051637049 1.74E-11 10.75930986 -0.556523852 KGS(ph)ITEYTAAEEK ddPTM_HeLa_A486_30min_R1 6 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.996)IT(0.004)EYTAAEEK;KGS(0.5)IT(0.5)EYTAAEEK;KGS(0.995)IT(0.005)EYTAAEEK;KGS(0.5)IT(0.5)EYTAAEEK;KGS(0.934)IT(0.066)EYTAAEEK;KGS(1)ITEYTAAEEK ;;;;; 270.78 1.00E-42 6004660000 9753270 8568860 2502828 4805246 5192330 10550400 12765220 10758070 6123230 16152840 TRUE FALSE FALSE 9069616.139 7889832.326 3471990.03 11186855.53 4541059.555 9248798.917 9571226.939 8308692.308 6653996.507 12108063.73 0.749055864 0.651618005 0.286750228 0.923917794 0.37504424 0.763854496 0.790483694 0.686211478 0.549550833 1 23.52946484 KGS(ph)ITEYTAAEEKEDGR ddPTM_HeLa_A485_30min_R1 2 KGSITEYTAAEEKEDGR 17 2 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.99)IT(0.01)EYTAAEEKEDGR;KGS(0.998)IT(0.001)EYTAAEEKEDGR ; 69.922 0.0035415 605670000 486130 301660 256130 929940 509890 459850 742360 673680 397870 1376020 TRUE FALSE FALSE 594267.9414 336936.5129 350883.1455 980740.2675 459123.5613 483927.0349 583748.7215 508458.9237 477718.8595 1033003.538 0.575281613 0.326171693 0.339672743 0.949406494 0.444454975 0.468466 0.565098473 0.492214117 0.46245617 1 19.97841376 -10.6498014 2.756879266 1.052676725 0.513386802 0.439308404 0.164819901 47889943.72 43843534.16 17879864.13 0.041014266 2.24E-11 10.6498014 -0.539289923 KGS(ph)ITEYTAAEEKEDGR ddPTM_HeLa_A486_30min_R1 1 KGSITEYTAAEEKEDGR 17 2 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.98)IT(0.02)EYTAAEEKEDGR 96.881 0.00026251 84728000 169710 154040 57351 94419 159750 189980 248460 230180 126770 282700 TRUE FALSE FALSE 157814.2054 141833.3094 79558.84311 219812.2037 139712.6654 166542.1992 186292.6801 177773.0388 137758.5257 211910.0799 0.744722504 0.669308933 0.375436804 1.037289985 0.65930165 0.785909756 0.879111933 0.838907894 0.650080099 1 17.69309269 -5.263437306 24.9997148 0.821459792 0.603771376 0.355308928 0.146736729 209.9658766 2627278.304 0.039730979 0.062439635 5.45E-06 5.263437306 -0.217688417 KGS(ph)ITEYTAAEEKEDGRR ddPTM_HeLa_A485_30min_R1 3 KGSITEYTAAEEKEDGRR 18 3 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.868)IT(0.132)EYTAAEEKEDGRR;KGS(0.997)IT(0.003)EYTAAEEKEDGRR;KGS(0.981)IT(0.019)EYTAAEEKEDGRR ;; 229.78 6.63E-35 9083760000 2385200 1783550 1188280 4123300 3300170 3165800 6149260 6622140 2354400 6684840 TRUE FALSE FALSE 2915779.511 1992120.658 1627874.22 4348545.438 2971593.487 3331556.393 4835420.366 4998049.782 2826906.484 5018432.413 0.581014004 0.396960743 0.324379026 0.866514696 0.592135799 0.663863956 0.963532029 0.995938447 0.563304684 1 22.25880536 -5.772668186 0.818151294 0.870752376 0.428763768 0.45617421 0.173447013 0.610751447 0.887192925 0.095290575 0.158761746 1.69E-06 5.772668186 -0.441988608 KGS(ph)ITEYTAAEEKEDGRR ddPTM_HeLa_A486_30min_R1 4 KGSITEYTAAEEKEDGRR 18 3 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.926)IT(0.074)EYTAAEEKEDGRR;KGS(0.999)IT(0.001)EYTAAEEKEDGRR;KGS(0.977)IT(0.023)EYTAAEEKEDGRR;KGS(0.916)IT(0.084)EYTAAEEKEDGRR ;;; 219.35 1.39E-33 4713540000 1551960 1325030 612700 1228604 1495660 1819250 2767690 2661860 1071609 2890620 TRUE FALSE FALSE 1443175.618 1220029.797 849953.8487 2860252.202 1308060.376 1594809.432 2075184.688 2055812.586 1164496.931 2166789.937 0.666043161 0.563058641 0.392264074 1.320041298 0.603685828 0.736024016 0.95772306 0.948782598 0.537429545 1 21.04712787 -5.171811827 24.66949733 0.856668586 0.54271545 0.326467868 0.217414065 73.81906213 20315.52107 0.057236425 0.099136401 6.73E-06 5.171811827 -0.313953137 KGS(ph)LAALYDLAVLK ddPTM_HeLa_A485_30min_R1 1 KGSLAALYDLAVLK 14 1 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 KGS(0.999)LAALY(0.001)DLAVLK 79.311 0.0031351 25678000 48201 34049 25477 66298 47870 45948 70927 69404 33803 86640 TRUE FALSE FALSE 58923.14616 38030.73436 34902.00249 69919.69186 43103.89472 48353.76623 55772.86703 52382.56018 40586.95204 65042.24249 0.905921197 0.584708228 0.536605153 1.074988949 0.662706159 0.743420958 0.857486841 0.805362149 0.624009113 1 15.98908938 -11.04762648 2.592869491 1.326329649 0.754438373 0.183250512 0.155151392 39327379.86 8018113.88 76356395.41 0.037688384 8.96E-12 11.04762648 -0.571891276 KGS(ph)LAALYDLAVLK ddPTM_HeLa_A486_30min_R1 2 KGSLAALYDLAVLK 14 1 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 KGS(0.999)LAALY(0.001)DLAVLK;KGS(1)LAALYDLAVLK ; 127.5 1.47E-05 39893000 153579 158296 68906 111081 143568 195382 251410 225050 123864 260770 TRUE FALSE FALSE 142813.9052 145752.0485 95588.24857 258602.1817 125560.3627 171277.7553 188504.5589 173811.0278 134600.6313 195471.4947 0.730612437 0.745643495 0.48901375 1.322966206 0.642346153 0.876228811 0.964358303 0.889188616 0.68859468 1 17.57659871 KGS(ph)PCDTLASSTEK ddPTM_HeLa_A486_30min_R1 1 KGSPCDTLASSTEK 14 1 Q15788-2;Q15788-3;Q15788 Q15788-2 NCOA1 Nuclear receptor coactivator 1 1 0 KGS(0.999)PCDT(0.001)LASSTEK 66.893 0.0077911 0 90780 91525 36399 52003 74456 103240 131610 121000 64698 146290 TRUE FALSE FALSE 84416.79079 84272.22567 50493.6676 121065.6121 65117.03421 90503.29847 98679.78597 93450.94141 70306.07473 109658.0318 0.769818584 0.768500257 0.460464836 1.10402868 0.593819104 0.825323024 0.899886532 0.852203344 0.641139309 1 16.74265196 -14 0.149557971 1.7665331 0.704573409 0.137686781 0.168688112 272.4413203 2.420526382 62.78732636 0.835619852 1.00E-14 14 -1.06195969 KGS(ph)PTPGFSTR ddPTM_HeLa_A485_30min_R1 3 KGSPTPGFSTR 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 KGS(0.877)PT(0.123)PGFSTR;KGS(0.855)PT(0.145)PGFSTR;KGS(0.68)PT(0.32)PGFSTR ;; 87.447 0.0018523 4621200000 1536010 1663900 1409610 1632710 2174760 1757280 2384680 2385110 1488450 2504430 TRUE FALSE FALSE 1877690.125 1858478.631 1931083.398 1721900.813 1958233.258 1849288.464 1875173.637 1800158.033 1787168.262 1880121.692 0.998706697 0.988488479 1.027105536 0.915845406 1.041546016 0.983600408 0.997368226 0.957468892 0.950559887 1 20.84239461 -7.25680431 24.38395045 0.965510792 0.992868006 0.094083263 0.033333701 577.0700833 3035848.235 0.015504499 0.008557205 5.54E-08 7.25680431 0.027357215 KGS(ph)PTPGFSTR ddPTM_HeLa_A486_30min_R1 6 KGSPTPGFSTR 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 KGS(0.627)PT(0.373)PGFSTR;KGS(0.716)PT(0.283)PGFSTR;KGS(0.676)PT(0.267)PGFS(0.047)T(0.011)R;KGS(0.941)PT(0.059)PGFSTR;KGS(0.754)PT(0.246)PGFSTR;KGS(0.923)PT(0.077)PGFSTR ;;;;; 102.63 0.00060228 8123700000 3804100 4064700 2717610 1601430 4462540 3725100 4662410 4560970 3196830 4692740 TRUE FALSE FALSE 3537452.234 3742598.369 3769941.372 3728209.972 3902806.622 3265535.036 3495825.704 3522536.696 3473933.798 3517647.359 1.005630148 1.063949278 1.071722372 1.059858932 1.109493426 0.928329279 0.99379652 1.001389945 0.987573069 1 21.74617943 -6.258004884 24.99979213 0.983028307 1.062638502 0.63206183 0.030481278 204.0949729 1485618.797 0.0103179 0.009919154 5.52E-07 6.258004884 0.079610195 KGS(ph)QITQQSTNQSR ddPTM_HeLa_A485_30min_R1 2 KGSQITQQSTNQSR 14 1 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 KGS(0.998)QIT(0.002)QQSTNQSR;KGS(0.995)QIT(0.005)QQSTNQSR ; 200.73 4.90E-22 282890000 135455 76317 66733 236283 132158 84343 138588 109565 88304 288350 TRUE FALSE FALSE 165586.4974 85241.60928 91420.31369 249190.542 118999.8855 88759.06906 108977.5416 82694.01196 106025.8028 216469.6517 0.764940933 0.393780877 0.422323928 1.151156941 0.54973011 0.410030082 0.503431039 0.382012034 0.48979523 1 17.72380525 -10.00171939 4.817680576 1.000006152 0.55923731 0.255457328 0.223719123 310714350.1 1.855437351 23562.80625 0.056137401 9.96E-11 10.00171939 -0.440768842 KGS(ph)QITQQSTNQSR ddPTM_HeLa_A486_30min_R1 2 KGSQITQQSTNQSR 14 1 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 KGS(1)QITQQSTNQSR;KGS(1)QITQQSTNQSR ; 193.42 3.24E-18 376310000 173603 203629 106520 124981 188570 232690 286530 245150 169972 312920 TRUE FALSE FALSE 161434.3262 187492.6964 147767.3967 290962.0842 164917.7923 203983.0736 214837.1634 189334.6966 184705.3098 234562.7952 0.688235003 0.799328369 0.629969457 1.240444308 0.703085893 0.869630981 0.915904686 0.807181277 0.787445041 1 17.83961468 KGS(ph)QTNLKDPVGVYCR ddPTM_HeLa_A485_30min_R1 1 KGSQTNLKDPVGVYCR 16 2 Q02241;A0A2U3TZL8;H7BYN4;A0A2R8Y531;H0YME6;H0YMJ4;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 KGS(0.942)QT(0.058)NLKDPVGVYCR 83.849 0.001011 442480000 263600 207580 130740 425820 339420 256640 401040 388470 215660 622890 TRUE FALSE FALSE 322236.9106 231854.6753 179106.1665 449081.4684 305626.153 270077.2736 315354.5278 293197.1234 258940.9838 467614.9864 0.689107321 0.495823877 0.383020587 0.960365859 0.653585026 0.57756334 0.674389267 0.627005404 0.553748257 1 18.83496164 -10.58420455 2.581575641 1.031724392 0.623987647 0.386192797 0.142266013 14528501.42 13154465.68 3141918.15 0.037850666 2.60E-11 10.58420455 -0.407736745 KGS(ph)SGNASEVSVACLTER ddPTM_HeLa_A485_30min_R1 4 KGSSGNASEVSVACLTER 18 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 KGS(0.99)S(0.01)GNASEVSVACLTER;KGS(0.975)S(0.025)GNASEVSVACLTER;KGS(0.962)S(0.038)GNASEVSVACLTER;KGS(0.799)S(0.201)GNASEVSVACLTER ;;; 236.64 1.95E-45 3199210000 1367180 1041470 832920 1776070 1578480 1125780 1771740 1513850 1012350 2311770 TRUE FALSE FALSE 1671304.474 1163260.857 1141051.769 1873092.207 1421320.989 1184724.1 1393193.275 1142575.914 1215519.359 1735488.284 0.963016858 0.670278715 0.657481689 1.079288304 0.818974695 0.68264598 0.802767318 0.658359912 0.700390415 1 20.7269102 -6.02810974 24.11226098 0.749735464 0.833513718 0.045141043 0.146812565 1409.022353 1208642.649 0.04854739 0.048670085 9.37E-07 6.02810974 0.083778254 KGS(ph)SGNASEVSVACLTER ddPTM_HeLa_A486_30min_R1 4 KGSSGNASEVSVACLTER 18 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 KGS(0.993)S(0.007)GNASEVSVACLTER;KGS(0.918)S(0.082)GNASEVSVACLTER;KGS(0.972)S(0.028)GNASEVSVACLTER;KGS(0.927)S(0.072)GNASEVSVACLTER ;;; 252.71 7.69E-58 3173600000 1651450 1722670 916225 893677 1617670 1785630 2364250 2191610 1313760 2315690 TRUE FALSE FALSE 1535691.883 1586159.355 1271011.857 2080525.22 1414766.744 1565337.126 1772689.644 1692628.246 1427637.775 1735826.151 0.884703737 0.913777773 0.732223015 1.198579258 0.815039423 0.9017822 1.021236857 0.975113921 0.822454353 1 20.72719103 KGS(ph)VSHDTVQPR ddPTM_HeLa_A485_30min_R1 1 KGSVSHDTVQPR 12 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 KGS(0.968)VS(0.032)HDTVQPR 91.657 0.00078642 0 41467 50344 42947 50368 67389 45168 71210 59061 40122 75652 TRUE FALSE FALSE 50691.19109 56231.29287 58834.88247 53119.4763 60679.51454 47532.92664 55995.40177 44576.19715 48174.11738 56793.34867 0.892555066 0.990103492 1.035946706 0.935311573 1.068426426 0.836945307 0.985949994 0.784884114 0.848235198 1 15.79343436 -6.274713166 24.91282487 0.883679873 0.984910646 0.270820653 0.076017601 954.3959231 1791247.113 0.025883348 0.022961796 5.31E-07 6.274713166 0.101230773 KGS(ph)VSHDTVQPR ddPTM_HeLa_A486_30min_R1 1 KGSVSHDTVQPR 12 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 KGS(0.798)VS(0.202)HDTVQPR 132.59 1.37E-05 139160000 61536 63704 50507 9412.8 75802 49188 63694 56945 52071 53787 TRUE FALSE FALSE 57222.64417 58655.86303 70064.66302 21913.4741 66294.20633 43119.68467 47757.08751 43979.8666 56584.55621 40318.38511 1.41926925 1.454816776 1.737784458 0.54351071 1.644267402 1.069479458 1.184499017 1.09081419 1.403443021 1 15.29915023 KGS(ph)WSER ddPTM_HeLa_A485_30min_R1 2 KGSWSER 7 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0U1RQT6 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 KGS(0.905)WS(0.095)ER;KGS(0.96)WS(0.04)ER ; 80.706 0.0071184 367700000 404750 374530 297310 478140 468620 361640 523830 474890 439150 681420 TRUE FALSE FALSE 494785.2411 418328.0255 407297.3411 504259.5775 421962.5474 380574.9112 411909.4412 358422.4829 527283.3769 511554.5346 0.967218953 0.817758415 0.796195349 0.98573963 0.824863272 0.743957653 0.805211201 0.700653515 1.030747147 1 18.96452852 -7.78631537 24.99876916 1.015373921 0.829950641 0.440709848 0.083441034 248.5815117 249801.2849 0.082049457 0.021221685 1.64E-08 7.78631537 -0.18542328 KGS(ph)WSER ddPTM_HeLa_A486_30min_R1 1 KGSWSER 7 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0U1RQT6 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 KGS(0.998)WS(0.002)ER 100.88 0.0027366 0 214030 215340 110500 83540 207270 260950 291150 281840 183110 288480 TRUE FALSE FALSE 199027.6023 198275.6741 153288.5593 194485.3419 181272.2639 228756.6421 218301.1905 217671.1845 198982.1222 216242.7303 0.920389795 0.916912554 0.708872659 0.899384417 0.838281424 1.057869746 1.009519211 1.006605791 0.920179476 1 17.72229211 -6.250966148 24.59652297 0.99991548 0.854260668 0.548037759 0.064483343 449.3786522 1055372 0.021823388 0.021590936 5.61E-07 6.250966148 -0.145654812 KGSDDAPYS(ph)PTAR ddPTM_HeLa_A485_30min_R1 2 KGSDDAPYSPTAR 13 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 KGSDDAPYS(0.96)PT(0.04)AR;KGSDDAPY(0.001)S(0.963)PT(0.037)AR ; 112.82 0.00022607 209940000 725750 766120 629660 854150 1120540 786230 1042890 1373910 771210 1272730 TRUE FALSE FALSE 887190.5837 855711.0696 862597.4363 900810.0517 1008975.103 827395.7871 820068.0319 1036956.418 925984.773 955461.8339 0.928546335 0.895599426 0.902806795 0.942800664 1.056007752 0.865964247 0.858294913 1.085293396 0.969148887 1 19.86583872 -7.261587803 24.99999999 1.020415854 0.923586127 0.365741865 0.058293876 15.46360574 2604095.182 0.030699958 0.016191097 5.48E-08 7.261587803 -0.096829727 KGSDDAPYS(ph)PTAR ddPTM_HeLa_A486_30min_R1 2 KGSDDAPYSPTAR 13 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 KGSDDAPYS(0.968)PT(0.032)AR;KGSDDAPY(0.173)S(0.761)PT(0.065)AR ; 90.422 0.00093303 515650000 876030 857200 548010 274460 889010 871470 1004470 946360 688340 892660 TRUE FALSE FALSE 814624.8208 789272.3501 760214.1482 638956.7504 777502.0761 763956.8919 753140.9818 730894.4869 748005.8654 669132.1258 1.217434927 1.17954634 1.136119638 0.954903712 1.161955982 1.141713067 1.12554898 1.092302191 1.117874687 1 19.35193159 -1.000000004 0.014135127 2.34E-09 2.441308412 0.304096732 0.063236674 9350.573896 10.22938954 715.5617284 1087.044363 0.099999999 1.000000004 2.44130841 KGSGKRPAAAAAAGSAS(ph)PR ddPTM_HeLa_A485_30min_R1 2 KGSGKRPAAAAAAGSASPR 19 3 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 KGSGKRPAAAAAAGS(0.001)AS(0.999)PR;KGSGKRPAAAAAAGS(0.001)AS(0.999)PR ; 159.98 1.64E-11 2966000000 1122320 2645600 788110 441590 1486020 3521300 3662300 8044800 953250 636350 TRUE FALSE FALSE 1371976.212 2954979.906 1079664.685 465712.9435 1338066.631 3705669.823 2879819.687 6071800.186 1144558.531 477719.6562 2.871927488 6.185594141 2.260038228 0.974866614 2.800945311 7.756996756 6.028262915 12.70996516 2.395879082 1 18.86580471 -6.25329666 23.77949101 6.713221267 3.038922669 0.156243889 3.219518105 466.7380496 1363032.4 1.038561885 1.020105485 5.58E-07 6.25329666 -3.674298598 KGSGKRPAAAAAAGSAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 KGSGKRPAAAAAAGSASPR 19 3 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 KGSGKRPAAAAAAGS(0.019)AS(0.981)PR;KGSGKRPAAAAAAGS(0.002)AS(0.998)PR ; 109.41 0.00034032 1291840000 1444390 572120 319962 421294 843960 447873 963130 1020310 401888 1738130 TRUE FALSE FALSE 1343145.72 526783.1276 443859.8553 980793.723 738102.6672 392618.9829 722144.687 788007.6862 436723.9754 1302890.935 1.030896512 0.404318668 0.340673071 0.752782675 0.566511477 0.301344474 0.554263345 0.604814774 0.335196112 1 20.31328489 -10.60334026 6.158538005 1.001676538 0.535209171 0.294079174 0.211874148 0.00473631 0.000305056 0.199219944 0.048171579 2.49E-11 10.60334026 -0.466467368 KGSIT(ph)EYTAAEEK ddPTM_HeLa_A485_30min_R1 1 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.422)IT(0.484)EYT(0.095)AAEEK 195.98 3.51E-18 325500000 205180 146640 82746 364410 171670 189870 362840 245570 152870 554430 TRUE FALSE FALSE 250821.5831 163788.2724 113357.1887 384316.7956 154577.932 199811.2996 285316.2699 185343.5725 183549.6068 416220.8045 0.602616641 0.39351294 0.272348685 0.923348356 0.371384444 0.480060817 0.685492572 0.445301077 0.440990947 1 18.66698955 -10.92772721 2.46527464 1.323551247 0.512253477 0.408557496 0.175861122 23098706.89 11438669.43 43044026.31 0.044969515 1.18E-11 10.92772721 -0.811297769 KGSLLPT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KGSLLPTSPR 10 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 KGSLLPT(0.591)S(0.409)PR 70.412 0.011887 780570000 1321100 1681100 1434000 1473100 2136800 1813800 2260000 2529900 1586600 1975100 TRUE FALSE FALSE 1614974.137 1877690.021 1964496.274 1553571.723 1924052.689 1908767.763 1777132.537 1909438.058 1905016.067 1482743.919 1.089179403 1.26636164 1.324905972 1.047768062 1.297629796 1.287321255 1.19854313 1.287773319 1.284791016 1 20.49983802 -9.945682618 4.215833003 0.99999188 1.234209528 0.380170693 0.088654614 57642126.4 122000440.2 7187.942285 0.021590659 1.13E-10 9.945682618 0.234217648 KGSLLPT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 KGSLLPTSPR 10 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 KGS(0.001)LLPT(0.914)S(0.085)PR 68.809 0.012768 774630000 1601500 1776800 1426100 639540 2058800 1672200 1950500 2103700 1555900 2009600 TRUE FALSE FALSE 1489243.12 1635999.897 1978324.112 1488881.441 1800566.106 1465900.966 1462464.27 1624733.433 1690766.665 1506383.08 0.988621779 1.086045057 1.313294167 0.988381681 1.195290979 0.973126282 0.97084486 1.078565908 1.122401524 1 20.52265727 -6.270230635 24.8729308 1.03026416 1.116812329 0.157516234 0.098575633 1207.840166 3417309.249 0.034807082 0.031149487 5.37E-07 6.270230635 0.086548169 KGSLLPTS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KGSLLPTSPR 10 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 KGSLLPT(0.013)S(0.986)PR 72.659 0.007228 849020000 1214900 1599100 1474300 1271500 1863700 1863000 2036000 2349400 1431000 1866600 TRUE FALSE FALSE 1485150.314 1786100.835 2019704.921 1340958.825 1678143.484 1960543.799 1600991.967 1773205.966 1718188.574 1401290.972 1.059844346 1.274610962 1.4413173 0.956945311 1.197569611 1.399098287 1.142512154 1.265408828 1.226146895 1 20.41832513 -9.284305118 8.401540897 1 1.222583045 0.185233092 0.136981848 0 0 0.130835341 0.031732231 5.20E-10 9.284305118 0.222583045 KGSLLPTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KGSLLPTSPR 10 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;Q9H0E9-3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 KGSLLPT(0.336)S(0.664)PR 73.927 0.0067546 764030000 2147500 2432000 1822000 845230 2730900 2352800 2578000 2603900 1971100 2509500 TRUE FALSE FALSE 1996971.34 2239279.463 2527527.195 1967738.156 2388365.057 2062535.458 1932957.133 2011048.813 2141956.535 1881104.866 1.061594904 1.190406502 1.343639709 1.046054471 1.269660773 1.096448951 1.027564793 1.069078524 1.138669393 1 20.84314885 -6.485725803 11.69044616 1.06420776 1.18404295 0.30748969 0.088266659 1.540222375 483.1843359 0.030578179 0.026786118 3.27E-07 6.485725803 0.11983519 KGSPT(ph)PGFSTR ddPTM_HeLa_A485_30min_R1 1 KGSPTPGFSTR 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 KGS(0.363)PT(0.637)PGFSTR 85.976 0.0029079 2102700000 639870 679860 498350 808190 742670 646040 1029800 959200 491830 1108900 TRUE FALSE FALSE 782206.874 759363.713 682710.4031 852339.3733 668727.1671 679865.6554 809774.8173 723954.696 590535.7697 832471.6378 0.939619848 0.912179681 0.820100496 1.023865961 0.803303244 0.816683265 0.972735623 0.869644878 0.709376443 1 19.6670416 KGSTFRPHDS(ph)FPK ddPTM_HeLa_A485_30min_R1 2 KGSTFRPHDSFPK 13 2 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 KGSTFRPHDS(1)FPK;KGSTFRPHDS(1)FPK ; 104.76 0.00019703 1121810000 1344320 1176800 669320 1651090 1283910 1399500 1965340 1876060 951440 2478190 TRUE FALSE FALSE 1643359.346 1314416.523 916929.3207 1741284.866 1156079.412 1472775.656 1545429.054 1415953.343 1142385.281 1860422.841 0.88332572 0.706514935 0.492860709 0.935961883 0.621406804 0.791634903 0.830686992 0.761092216 0.614046042 1 20.82719913 KGSTFRPHDS(ph)FPK ddPTM_HeLa_A486_30min_R1 1 KGSTFRPHDSFPK 13 2 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 KGS(0.003)T(0.008)FRPHDS(0.989)FPK 64.275 0.0089434 687560000 731290 642670 314640 276930 665100 733050 866720 786890 489730 1081000 TRUE FALSE FALSE 680030.3474 591742.4886 436477.0344 644707.0353 581676.9562 642613.7441 649857.4888 607732.3247 532180.1907 810310.5639 0.839221871 0.730266289 0.53865401 0.795629557 0.717844469 0.793046238 0.801985705 0.749999262 0.656760771 1 19.62811542 -5.949479102 1.825600291 0.783819441 0.709941591 0.092847992 0.1087454 0.974164185 6.60987182 0.04013376 0.045876955 1.12E-06 5.949479102 -0.073877851 KGTAVFWYNLLR ddPTM_HeLa_A485_30min_R1 2 KGTAVFWYNLLR 12 1 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 ; ; 99.011 0.0037093 33038000 39446 41440 33824 35033 46336 52003 66629 82260 25294 45800 FALSE FALSE TRUE 48220.62661 46286.04752 46336.90513 36946.76408 41722.62514 54725.79667 52393.16984 62085.60602 30370.27379 34382.90289 1.402459437 1.346193708 1.347672862 1.07456791 1.213470116 1.59165725 1.523814613 1.805711584 0.883295802 1 15.06940373 -6.227860832 24.87414131 1.421435352 1.273418139 0 0.269244143 1834.212149 1358738.944 0.086853969 0.086849991 5.92E-07 6.227860832 -0.148017213 KGTAVFWYNLLR ddPTM_HeLa_A486_30min_R1 1 KGTAVFWYNLLR 12 1 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 108.59 0.0017957 16420000 10796 20524 20882 9254.8 29712 25234 31288 24757 24175 29378 FALSE FALSE TRUE 10039.25615 18897.60349 28968.06964 21545.64211 25985.24391 22120.88564 23459.41147 19120.37154 26270.50846 22021.55758 0.45588311 0.858141093 1.31544145 0.978388655 1.179991189 1.004510492 1.065293015 0.868257001 1.192945066 1 14.42662889 -4.37760856 3.382397433 1.069292223 0.440529106 0.700356073 0.123226848 0.134937815 2.496970044 0.029911968 0.178738839 4.19E-05 4.37760856 -0.628763117 down KGTENGVNGTLTSNVADS(ph)PR ddPTM_HeLa_A485_30min_R1 4 KGTENGVNGTLTSNVADSPR 20 1 G3XAN4;Q15629-2;Q15629 G3XAN4 TRAM1 Translocating chain-associated membrane protein 1 1 0 KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR ;;; 232.93 1.08E-36 6126300000 2682940 2244440 1178090 1933380 1630900 1831290 2063420 3509530 1782070 4578130 TRUE FALSE FALSE 3279750.747 2506907.734 1613914.515 2038995.654 1468521.87 1927173.513 1622553.46 2648812.265 2139715.103 3436886.445 0.954279636 0.729412442 0.46958622 0.593268264 0.427282627 0.560732379 0.472099817 0.770701129 0.622573698 1 21.71267076 -8.537693935 1.093032616 0.999635436 0.601132548 0.353663676 0.152687633 2.51812881 4.047180679 0.155436686 0.047994991 2.90E-09 8.537693935 -0.398502888 KGTENGVNGTLTSNVADS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KGTENGVNGTLTSNVADSPR 20 1 G3XAN4;Q15629-2;Q15629 G3XAN4 TRAM1 Translocating chain-associated membrane protein 1 1 0 KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLT(0.005)S(0.026)NVADS(0.97)PR ;;; 228.62 5.65E-36 2899900000 1859114 1603365 1174845 378788 1738608 1401857 1445656 1118014 1278199 1535830 TRUE FALSE FALSE 1728799.709 1476308.518 1629776.447 881837.6069 1520535.573 1228910.136 1083937.578 863466.6183 1388994.318 1151248.171 1.501674228 1.282354713 1.415660401 0.765983937 1.320771325 1.067458926 0.941532508 0.750026484 1.206511639 1 20.13476743 -4.419705195 0.602628508 0.97598429 1.772991779 0.436402179 0.186657823 2.859251436 0.900642404 0.095435358 1.546457675 3.80E-05 4.419705195 0.797007489 KGVAINFVK ddPTM_HeLa_A485_30min_R1 2 KGVAINFVK 9 1 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 0 0 ; ; 114.84 0.0013472 0 94610 95278 91590 108597 140179 114686 130164 148075 106563 170603 FALSE FALSE TRUE 115655.6681 106419.9333 125472.9524 114529.3791 126222.2866 120690.7816 102353.3981 111759.3741 127949.2166 128074.8118 0.903032114 0.830920083 0.979684847 0.894238121 0.9855356 0.942345961 0.799168834 0.872610098 0.999019361 1 16.96662725 KGVAINMVTEEDKR ddPTM_HeLa_A485_30min_R1 2 KGVAINMVTEEDKR 14 2 P60842 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 ; ; 208.47 6.32E-16 67744000 82324 73581 56008 105830 101801 102653 140988 149234 80109 163467 FALSE FALSE TRUE 100636.6898 82185.65788 76727.68989 111611.2249 91665.335 108027.7523 110864.762 112634.1275 96186.1415 122717.6853 0.820066721 0.669713234 0.625237428 0.909495845 0.746961082 0.880294899 0.90341308 0.917831258 0.783800161 1 16.90498365 -5.777610509 1.068886162 0.89462257 0.710928783 0.414030243 0.086406651 0.507064092 1.236141742 0.037902631 0.056495079 1.67E-06 5.777610509 -0.183693787 KGVDLLLEGVQGES(ph)SPTRR ddPTM_HeLa_A485_30min_R1 2 KGVDLLLEGVQGESSPTRR 19 2 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 KGVDLLLEGVQGES(0.496)S(0.496)PT(0.008)RR;KGVDLLLEGVQGES(0.491)S(0.491)PT(0.019)RR ; 90.1 0.00027501 566600000 153133 365430 364470 118524 286330 248230 243280 304500 275860 186368 TRUE FALSE FALSE 187196.9075 408163.8597 499302.6199 124998.666 257821.9798 261226.939 191301.2406 229820.8976 331222.5717 139909.8874 1.337981975 2.917333915 3.568744347 0.893422676 1.842771691 1.867108492 1.367317522 1.64263514 2.367399315 1 17.0941384 -5.268719371 24.99912898 1.610908247 2.638951474 0.345170668 0.653800402 624.3799857 2144089.864 0.182421033 0.276967416 5.39E-06 5.268719371 1.028043226 KGVDLLLEGVQGES(ph)SPTRR ddPTM_HeLa_A486_30min_R1 2 KGVDLLLEGVQGESSPTRR 19 2 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 KGVDLLLEGVQGES(0.486)S(0.38)PT(0.134)RR;KGVDLLLEGVQGES(0.434)S(0.434)PT(0.131)RR ; 50.783 0.017431 343607000 235392 253970 238770 131465 332360 288902 331593 312857 244689 353349 TRUE FALSE FALSE 218892.2364 233844.4923 331228.1385 306057.1639 290672.3097 253260.2086 248624.9242 241626.2907 265898.8395 264868.1105 0.826419745 0.882871448 1.250539893 1.155507786 1.097422824 0.956174785 0.938674436 0.912251348 1.00389148 1 18.01491463 -6.283347219 21.0726201 0.955243759 1.051511322 0.100881257 0.117530683 258.1049716 248261.3506 0.045879566 0.04053418 5.21E-07 6.283347219 0.096267563 KGVDLLLEGVQGESS(ph)PTRR ddPTM_HeLa_A486_30min_R1 1 KGVDLLLEGVQGESSPTRR 19 2 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 KGVDLLLEGVQGES(0.158)S(0.809)PT(0.033)RR 60.943 0.013508 257240000 172840 172620 90323 89430 191140 205660 256530 240700 148470 238990 TRUE FALSE FALSE 160724.8085 158940.9625 125298.4845 208197.5595 167165.4389 180287.7602 192343.4807 185897.8644 161339.4991 179145.3484 0.89717545 0.887217915 0.6994236 1.162171172 0.933127432 1.00637701 1.07367276 1.037692946 0.900606689 1 17.45077106 -5.259265339 24.99999621 1.016325589 0.833866888 0.512855054 0.084037983 158.154131 1818653.428 0.022659964 0.036917206 5.50E-06 5.259265339 -0.182458701 KGVEFPMADLDALS(ph)PIHT(ph)PQR ddPTM_HeLa_A486_30min_R1 2 KGVEFPMADLDALSPIHTPQR 21 1 Q6ZVM7-2;Q6ZVM7-5;Q6ZVM7 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 2 0 KGVEFPMADLDALS(1)PIHT(1)PQR;KGVEFPMADLDALS(1)PIHT(1)PQR ; 136.66 2.81E-07 75456000 112893 111622 86888 44317 141729 119028 136890 144533 91962 138330 TRUE FALSE FALSE 104979.7837 102776.6662 120533.3605 103172.2157 123952.0272 104343.5355 102638.6741 111625.991 99933.3402 103691.2676 1.012426466 0.991179571 1.162425374 0.994994256 1.195395042 1.006290481 0.989848774 1.076522581 0.963758497 1 16.66193488 KGVEPSPS(ph)PIKPGDIKR ddPTM_HeLa_A485_30min_R1 1 KGVEPSPSPIKPGDIKR 17 3 Q92890;Q92890-1;Q92890-3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 KGVEPS(0.016)PS(0.984)PIKPGDIKR 119.38 0.00034916 674410000 332230 243240 165780 472330 393070 426030 653200 728160 260950 672970 TRUE FALSE FALSE 406133.4173 271684.8021 227108.9207 498132.1919 353934.5706 448336.272 513638.4838 549577.6183 313320.2714 505210.9641 0.803888764 0.537765055 0.449532842 0.985988483 0.700567873 0.887423876 1.016681189 1.087818075 0.620177102 1 18.94652642 -5.26772283 24.98017942 0.899519204 0.591132502 0.432242485 0.158959264 454.5966514 1807272.692 0.044621223 0.068044038 5.40E-06 5.26772283 -0.308386703 KGVEPSPS(ph)PIKPGDIKR ddPTM_HeLa_A486_30min_R1 2 KGVEPSPSPIKPGDIKR 17 3 Q92890;Q92890-1;Q92890-3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 KGVEPSPS(1)PIKPGDIKR;KGVEPS(0.01)PS(0.99)PIKPGDIKR ; 153.19 3.28E-08 1527880000 957530 760180 238234 512180 681580 997490 1357780 1264610 548070 1575820 TRUE FALSE FALSE 890412.0917 699940.5683 330484.5849 1192380.924 596089.8809 874429.8255 1018049.083 976685.9092 595577.1489 1181224.415 0.753804341 0.592555114 0.27978137 1.009444868 0.504637284 0.740274087 0.861859161 0.826841959 0.504203216 1 20.17185165 -5.843173936 1.002608157 0.779001993 0.587065414 0.113681523 0.209807621 1.252006787 2.712920553 0.098821146 0.139705114 1.43E-06 5.843173936 -0.191936579 KGVITVK ddPTM_HeLa_A485_30min_R1 2 KGVITVK 7 1 P10809;E7EXB4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 91.853 0.0058214 0 207758 263840 170445 216891 251152 278870 303200 352250 214596 371310 FALSE FALSE TRUE 253973.0503 294693.7929 233499.6983 228739.2061 226146.425 293471.202 238418.8431 265860.1352 257663.4488 278749.2505 0.911116532 1.057200306 0.837669332 0.820591287 0.811289805 1.052814318 0.855316535 0.953760897 0.924355665 1 18.0886084 -6.244791912 24.9977438 0.947988744 0.890503494 0.152077093 0.08064754 2125.635995 3191843.952 0.028135266 0.028057623 5.69E-07 6.244791912 -0.057485249 KGVITVK ddPTM_HeLa_A486_30min_R1 2 KGVITVK 7 1 P10809;E7EXB4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 91.318 0.0059619 0 123365 125932 85241 44599 140056 126264 138289 146153 121377 164761 FALSE FALSE TRUE 114717.7506 115952.6897 118248.598 103828.7259 122488.8705 110686.8314 103687.6295 112877.1524 131898.0561 123503.7732 0.92886029 0.938859491 0.957449274 0.840692743 0.991782416 0.896222266 0.839550298 0.913957116 1.067967825 1 16.91419559 -7.751084195 24.99412756 1.033983908 0.912889255 0.510260124 0.047242923 143.6249499 346670.84 0.032650541 0.012040287 1.77E-08 7.751084195 -0.121094653 KGVITVK(ac)DGK ddPTM_HeLa_A486_30min_R1 1 KGVITVKDGK 10 2 P10809;E7EXB4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 KGVITVK(1)DGK 102.62 0.0037888 0 37064 38929 24800 12321 38804 33770 37150 40724 31608 39085 FALSE TRUE FALSE 34466.005 35844.12426 34403.22417 28683.91067 33936.84049 29603.80075 27854.67707 31452.0342 34347.80689 29297.8616 1.176400021 1.223438241 1.174257174 0.979044514 1.158338481 1.010442371 0.95074096 1.073526615 1.172365661 1 14.83850775 -5.124899487 5.940505735 1.051430646 1.199483746 0.473877853 0.068886492 0.203132082 8.948296237 0.019091583 0.033664058 7.50E-06 5.124899487 0.1480531 KGVLGKS(ph)PLSALAR ddPTM_HeLa_A485_30min_R1 1 KGVLGKSPLSALAR 14 2 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KGVLGKS(0.933)PLS(0.067)ALAR 116.51 6.94E-05 524010000 343550 442710 271160 353210 794370 741730 860730 1379400 414480 577330 TRUE FALSE FALSE 419971.5123 494481.0834 371473.3679 372504.9679 715279.7336 780565.8359 676828.004 1041099.987 497662.3342 433412.256 0.968988547 1.140902401 0.857090133 0.859470314 1.650344963 1.800977765 1.561626361 2.402100939 1.148242412 1 18.72538042 -5.767694216 24.82115504 1.672729257 0.962667589 0.411106608 0.366405608 116.3101316 461554.3577 0.107084682 0.124448225 1.71E-06 5.767694216 -0.710061669 KGVLGKS(ph)PLSALAR ddPTM_HeLa_A486_30min_R1 2 KGVLGKSPLSALAR 14 2 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KGVLGKS(0.939)PLS(0.061)ALAR;KGVLGKS(0.702)PLS(0.298)ALAR ; 140.89 4.71E-07 671430000 1009920 827190 641460 608540 1688600 1089950 1692440 1661370 697540 1264140 TRUE FALSE FALSE 939129.8232 761640.4518 889850.4909 1416711.874 1476800.042 955483.0508 1268973.611 1283112.318 758003.3288 947591.1158 0.991070735 0.803764872 0.939065886 1.495066649 1.558478143 1.008328418 1.339157354 1.354078037 0.799926589 1 19.85390515 -5.109006543 7.647451441 1.246392419 0.891198922 0.279899137 0.226693887 0.317659154 19.78121975 0.06175522 0.107696647 7.78E-06 5.109006543 -0.355193498 KGVNLPGAAVDLPAVSEK ddPTM_HeLa_A485_30min_R1 2 KGVNLPGAAVDLPAVSEK 18 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 168.2 1.67E-14 285600000 438860 435250 310120 484450 415950 483180 618640 593220 400420 672130 FALSE FALSE TRUE 536482.893 486148.7013 424846.2932 510914.2768 374536.5575 508478.5577 486462.5102 447731.8649 480780.6211 504580.3606 1.06322587 0.963471311 0.841979447 1.012552839 0.742273356 1.007725622 0.964093231 0.8873351 0.952832608 1 18.94472453 -4.344336392 3.671174709 0.921961136 1.068157684 0.205394369 0.080366541 0.341519059 7.659193595 0.019200285 0.114138717 4.53E-05 4.344336392 0.146196547 KGVNLPGAAVDLPAVSEK ddPTM_HeLa_A486_30min_R1 1 KGVNLPGAAVDLPAVSEK 18 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 157.51 1.98E-08 290130000 448930 405320 210850 189020 492680 425470 477740 468900 345300 535980 FALSE FALSE TRUE 417462.3253 373200.967 292496.7668 440048.1125 430883.4803 372979.8373 358204.399 362141.706 375230.882 401767.1194 1.039065432 0.92889873 0.728025646 1.095281548 1.072470741 0.928348337 0.891572211 0.901372184 0.933951197 1 18.61599997 -4.257458215 22.7638482 0.939276011 1.039065574 0.081427291 0.097139329 325.8528565 1862903.465 0.025374196 0.183343111 5.53E-05 4.257458215 0.099789562 KGVSASAVPFTPS(ph)SPLLSCSQEGSR ddPTM_HeLa_A486_30min_R1 1 KGVSASAVPFTPSSPLLSCSQEGSR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 KGVSASAVPFT(0.008)PS(0.616)S(0.375)PLLSCSQEGSR 90.741 0.0019024 557320000 312810 317100 262480 98056 415080 281710 318330 347930 244780 346360 TRUE FALSE FALSE 290883.6344 291971.8411 364119.2855 228279.3235 363016.7959 246955.4844 238680.467 268713.9343 265997.7275 259629.2016 1.120381038 1.124572426 1.402458904 0.87925134 1.398212504 0.951185317 0.919312872 1.034991182 1.024529313 1 17.98609313 -6.339695934 24.99999999 0.98402209 1.176726 0.325704339 0.142883654 137.9475385 44067.84063 0.047582482 0.041963808 4.57E-07 6.339695934 0.19270391 KGVSQTGT(ph)PVCEEDGDAGLGIR ddPTM_HeLa_A485_30min_R1 1 KGVSQTGTPVCEEDGDAGLGIR 22 1 Q12888;Q12888-2;Q12888-3 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KGVS(0.004)QT(0.008)GT(0.989)PVCEEDGDAGLGIR 65.125 0.010355 297740000 168530 182930 117500 120620 255670 142780 218300 218840 148620 196790 TRUE FALSE FALSE 206018.9171 204322.0722 160968.1396 127209.1652 230214.5971 150255.74 171658.4217 165169.1469 178446.6708 147733.8747 1.394527271 1.38304145 1.08958179 0.861069714 1.558306094 1.017070326 1.161943542 1.118018107 1.207892714 1 17.17264114 -4.754336881 24.52399728 1.134216233 1.388784561 0.270757321 0.171672948 168.855382 583016.6016 0.042738417 0.107958078 1.76E-05 4.754336881 0.254568328 KGWDAEGS(ph)PFR ddPTM_HeLa_A485_30min_R1 1 KGWDAEGSPFR 11 1 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 1 0 KGWDAEGS(1)PFR 72.315 0.0071068 154280000 221400 243460 223730 292780 383730 276350 318880 317340 265500 388290 TRUE FALSE FALSE 270649.6662 271930.5292 306497.0372 308773.83 345524.4938 290819.2587 250748.683 239511.8674 318783.4147 291496.4489 0.928483579 0.932877674 1.051460621 1.059271326 1.18534718 0.997676849 0.860211793 0.821663071 1.093609942 1 18.15311878 -6.533992152 23.88324621 0.929000381 1.034947735 0.147027305 0.096761377 220.6386659 474155.3928 0.038729064 0.030032802 2.92E-07 6.533992152 0.105947354 KGWDAEGS(ph)PFR ddPTM_HeLa_A486_30min_R1 1 KGWDAEGSPFR 11 1 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 1 0 KGWDAEGS(1)PFR 76.341 0.0055881 115630000 291010 330480 206500 181420 353970 369190 469580 429680 251690 506810 TRUE FALSE FALSE 270611.7018 304291.5612 286462.3303 422354.9285 309571.782 323643.0914 352086.1173 331851.2438 273506.6919 379901.4772 0.712320741 0.800974935 0.754043739 1.111748582 0.814873857 0.851913222 0.926782701 0.873519225 0.719941112 1 18.5352658 KHAAS(ph)DVDLEIESLLNQQSTK ddPTM_HeLa_A485_30min_R1 1 KHAASDVDLEIESLLNQQSTK 21 1 F5H6D8;B4DTN4;Q86U44;H0YFV6 F5H6D8 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 KHAAS(0.999)DVDLEIES(0.001)LLNQQSTK 135.04 5.53E-07 17317000 21135 20575 15615 22990 26217 25372 35729 42397 21273 37179 TRUE FALSE FALSE 25836.40784 22981.06727 21391.63829 24245.88549 23606.74343 26700.43869 28095.20727 31999.06927 25542.29597 27910.95953 0.925672505 0.823370735 0.766424324 0.868686921 0.845787598 0.956629193 1.006601269 1.146469696 0.915135001 1 14.7685441 -6.442368525 2.164678339 1.030066737 0.839013385 0.609009173 0.064786169 0.200059581 1.856098332 0.026887507 0.021921697 3.61E-07 6.442368525 -0.191053352 KHDS(ph)GAADLER ddPTM_HeLa_A485_30min_R1 1 KHDSGAADLER 11 1 J3QT56;Q9NX55-3;Q9NX55 J3QT56 HYPK Huntingtin-interacting protein K 1 0 KHDS(1)GAADLER 94.882 0.0012402 520770000 608890 613740 509030 789080 831660 718030 978590 993570 592120 928170 TRUE FALSE FALSE 744335.4799 685511.5542 697341.3795 832185.4423 748857.0103 755624.9405 769506.2522 749895.3996 710953.0528 696794.3007 1.068228427 0.983807637 1.000785137 1.194305754 1.074717473 1.084430426 1.104352104 1.076207711 1.020319845 1 19.4103733 KHDS(ph)GAADLER ddPTM_HeLa_A486_30min_R1 1 KHDSGAADLER 11 1 J3QT56;Q9NX55-3;Q9NX55 J3QT56 HYPK Huntingtin-interacting protein K 1 0 KHDS(1)GAADLER 71.685 0.0073446 394770000 787460 764380 438000 414990 722080 806360 1004900 969570 627770 1156500 TRUE FALSE FALSE 732263.1204 703807.745 607605.33 966117.6924 631509.9933 706879.5017 753463.3913 748820.0766 682185.6091 866904.8724 0.844686821 0.811862717 0.700890431 1.114444875 0.728465156 0.815406078 0.86914195 0.863785751 0.786920954 1 19.72551417 -10.27463573 4.733213618 1.000056968 0.838553269 0.174423274 0.106165281 140423557.6 8.96855883 91102.50021 0.024696715 5.31E-11 10.27463573 -0.161503699 KHDSGAADLER ddPTM_HeLa_A486_30min_R1 1 KHDSGAADLER 11 1 J3QT56;Q9NX55-3;Q9NX55 J3QT56 HYPK Huntingtin-interacting protein K 0 0 71.176 0.017416 11600000 9092.8 12370 23803 2783.9 27102 6035.3 2914.3 7921.1 13008 3254.9 FALSE FALSE TRUE 8455.441675 11389.75615 33020.15907 6481.059891 23702.61444 5290.726048 2185.111316 6117.638446 14135.54391 2439.851854 3.465555362 4.668216281 13.53367378 2.656333367 9.714776085 2.168462007 0.895591801 2.507381108 5.793607464 1 11.25257784 -6.286059484 24.01152595 2.468630308 6.831882751 0.314348946 3.20081727 596.0524704 581316.1982 1.113401945 0.982467475 5.18E-07 6.286059484 4.363252442 KHEAFESDLAAHQDR ddPTM_HeLa_A485_30min_R1 7 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;A0A494C1A0;P35609;P35609-2;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H7C5W8 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 0 ;;;;;; ;;;;;; 209.66 4.91E-26 9311899000 2686917 3482436 2702999 2297018.5 3044964 2979418 3446395 3878851 2806149 3442618 FALSE FALSE TRUE 3284612.417 3889676.597 3702950.811 2422498.804 2741796.693 3135415.719 2710044.554 2927556.71 3369317.365 2584436.689 1.270920054 1.505038453 1.432788362 0.937341129 1.060887544 1.21319115 1.048601641 1.132763949 1.303695068 1 21.30141843 -5.242889159 24.81233984 1.106036906 1.413127956 0.605881484 0.111965022 501.6280224 670964.7852 0.030390958 0.052516098 5.72E-06 5.242889159 0.30709105 KHEAFESDLAAHQDR ddPTM_HeLa_A486_30min_R1 4 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;A0A494C1A0;P35609;P35609-2;F6THM6;A0A494C060;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H7C5W8 O43707;P12814-2 ACTN4;ACTN2;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-1 0 0 ;;; ;;; 220.27 6.93E-34 6488700000 2137070 1748790 1403440 322115 1939910 1750680 1853250 1831580 1471570 1806410 FALSE FALSE TRUE 1987272.429 1610209.511 1946889.553 749899.9988 1696588.399 1534698.901 1389547.248 1414569.217 1599126.872 1354073.178 1.467625576 1.18915989 1.437802317 0.553810541 1.25295178 1.133394358 1.026198045 1.044677082 1.180975222 1 20.36887428 KHFPSVNWLISYSK ddPTM_HeLa_A485_30min_R1 1 KHFPSVNWLISYSK 14 1 P38606-2;P38606 P38606-2 ATP6V1A V-type proton ATPase catalytic subunit A 0 0 83.729 0.0044749 12157000 21490 22534 18068 18428 23274 23265 33833 39991 12921 31630 FALSE FALSE TRUE 26270.37636 25169.15528 24752.10507 19434.67498 20956.75884 24483.11943 26604.30316 30183.14455 15514.12618 23745.22311 1.106343631 1.0599671 1.042403559 0.818466724 0.882567359 1.031075569 1.120406536 1.271124908 0.653357777 1 14.53534969 -5.011582934 23.76422469 0.980655439 1.075162944 0.078836677 0.158452719 921.0704769 1889746.152 0.043472088 0.081316424 9.74E-06 5.011582934 0.094507505 KHGLAHDEMKS(ph)PR ddPTM_HeLa_A485_30min_R1 11 KHGLAHDEMKSPR 13 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR ;;;;;;;;;; 197.49 8.86E-22 17102966000 18849270 17119274 10266778 22886330 18563460 17958300 24707130 27426570 15171830 29434530 TRUE FALSE FALSE 23042225.08 19121224.18 14064886.42 24136552.26 16715216.74 18898568.82 19428249.84 20700160.7 18216677.12 22097043.37 1.042774126 0.865329531 0.636505354 1.092297818 0.756445849 0.85525328 0.879223954 0.936784182 0.824394323 1 24.39735001 -10.41368229 3.047772333 1.00205886 0.873201918 0.081577927 0.123798332 57758261.22 69720959.86 1033994.931 0.029710379 3.86E-11 10.41368229 -0.128856942 KHGLAHDEMKS(ph)PR ddPTM_HeLa_A486_30min_R1 11 KHGLAHDEMKSPR 13 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR;KHGLAHDEMKS(1)PR ;;;;;;;;;; 170.16 1.75E-12 15308170000 25870110 17891480 9822337 10352273 17014230 22952670 24227820 23246950 13226819 31005130 TRUE FALSE FALSE 24056748.88 16473693.97 13625808.94 24100614.72 14880146.62 20121002.94 18165763.18 17954126.96 14373330.32 23241243.64 1.035088709 0.708812928 0.586277101 1.036976123 0.640247435 0.865745536 0.781617519 0.772511456 0.618440671 1 24.47018393 KHIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_HeLa_A486_30min_R1 2 KHIKEEPLSEEEPCTSTAIASPEK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 KHIKEEPLS(1)EEEPCTSTAIAS(1)PEK;KHIKEEPLS(1)EEEPCTSTAIAS(1)PEK ; 214.92 3.81E-30 815560000 365550 291126 129045 335233 300586 420410 681300 624680 260003 765280 TRUE FALSE FALSE 339926.8327 268056.1155 179014.6799 780439.3657 262883.701 368544.0886 510831.5339 482454.0007 282540.2694 573648.9069 0.592569477 0.467282535 0.312063141 1.360482616 0.458265845 0.642455837 0.890495088 0.841026619 0.492531697 1 19.1298085 KHLEINPDHPIVETLR ddPTM_HeLa_A485_30min_R1 4 KHLEINPDHPIVETLR 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;; ;;; 223.76 6.97E-26 2671506000 826462 1332628 978949 722371 1258660 1354111 1483992 2037435 959506 1062970 FALSE FALSE TRUE 1010305.621 1488467.252 1341102.973 761832.2986 1133343.391 1425010.158 1166924.986 1537750.872 1152070.053 797991.1415 1.266061198 1.865267889 1.680598822 0.954687664 1.420245579 1.785746838 1.462328246 1.927027497 1.443712835 1 19.60601321 KHLEINPDHPIVETLR ddPTM_HeLa_A486_30min_R1 2 KHLEINPDHPIVETLR 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ; ; 137.73 6.50E-08 926644000 460959 337140 332186 178199.5 492398 354920 497276 436470 280239 455819 FALSE FALSE TRUE 428648.1545 310423.7986 460817.3154 414857.4417 430636.8514 311133.579 372852.2852 337095.3091 304530.3422 341678.9555 1.254534842 0.908524782 1.348685098 1.214173232 1.260355209 0.910602113 1.091235732 0.986584932 0.891276262 1 18.38228187 -6.261119579 24.9999787 0.982307359 1.190566813 0.466243282 0.118192102 29.17509715 2280789.156 0.040432907 0.038044327 5.48E-07 6.261119579 0.208259454 KHLEINPDHSIIETLR ddPTM_HeLa_A485_30min_R1 2 KHLEINPDHSIIETLR 16 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 235.16 1.22E-41 403440000 134202 222381 157391 115797 192082 207082 230855 316393 154357 165653 FALSE FALSE TRUE 164054.7719 248386.5235 215616.4805 122122.6969 172957.6416 217924.4933 181530.9433 238797.1207 185335.0341 124358.7557 1.31920564 1.997338443 1.733826293 0.982019289 1.390795852 1.752385604 1.459735925 1.920227645 1.490325574 1 16.92414856 -8.032585528 23.43876168 0.999999989 1.574789319 0.260435417 0.286094181 2940.883271 2115374.759 0.285254858 0.073652488 9.28E-09 8.032585528 0.57478933 KHLEINPDHSIIETLR ddPTM_HeLa_A486_30min_R1 1 KHLEINPDHSIIETLR 16 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 202.41 1.79E-18 12815000 6683.4 6051.7 5401.8 3371.4 8904.7 7068.3 8946.1 7824.8 5565.3 6937.3 FALSE FALSE TRUE 6214.928173 5572.141252 7493.521625 7848.789581 7787.789493 6196.285011 6707.691158 6043.263854 6047.704685 5200.154926 1.195142887 1.071533701 1.441018918 1.509337643 1.497607207 1.191557771 1.289902177 1.162131502 1.162985482 1 12.34433889 -7.66637679 0.958786585 1.015001846 1.330093472 0.368813926 0.133572527 0.633650627 1.176589257 0.140884154 0.050777272 2.16E-08 7.66637679 0.315091625 KHNGVGGS(ph)PPK ddPTM_HeLa_A485_30min_R1 1 KHNGVGGSPPK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 KHNGVGGS(1)PPK 65.528 0.011145 62512000 62236 63294 30137 98944 63642 62812 103940 101490 52997 124380 TRUE FALSE FALSE 76080.18349 70695.68272 41285.93041 104349.0602 57305.57902 66100.73919 81732.36989 76599.41837 63633.01178 93374.35504 0.814786709 0.757120975 0.442154919 1.117534468 0.613718606 0.707911066 0.875319244 0.820347496 0.681482745 1 16.51073875 -14 0.272130972 2.661160228 0.742997258 0.15352057 0.167482166 408.1450414 3.960235872 381.5765732 0.198108182 1.00E-14 14 -1.91816297 KHNGVGGS(ph)PPK ddPTM_HeLa_A486_30min_R1 2 KHNGVGGSPPK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 KHNGVGGS(1)PPK;KHNGVGGS(1)PPK ; 67.234 0.012935 525600000 1215500 874880 420740 659900 689250 1201280 1473980 1100020 778070 2032530 TRUE FALSE FALSE 1130299.727 805551.3225 583661.7958 1536280.549 602797.838 1053078.287 1105174.614 849569.4593 845513.7341 1523571.258 0.741875197 0.528725728 0.383087954 1.008341777 0.395647945 0.691190702 0.725384263 0.557617148 0.554955162 1 20.53902555 -10.17361813 4.578314463 1.00006271 0.619131563 0.298068854 0.174576661 0.0001064 1.92E-05 0.16094704 0.039028982 6.70E-11 10.17361813 -0.380931147 KHPEVDVLINFASLR ddPTM_HeLa_A485_30min_R1 1 KHPEVDVLINFASLR 15 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 44.045 0.034288 7697600 16335 17043 12349 14271 12693 16915 20735 26764 10823 22139 FALSE FALSE TRUE 19968.66439 19036.0306 16917.40898 15050.58859 11429.24035 17800.64324 16304.79786 20200.08704 12995.07683 16620.15474 1.201472833 1.145358205 1.017885167 0.905562483 0.687673522 1.071027528 0.981025635 1.21539705 0.781886633 1 14.02064619 -4.789736633 2.76512181 0.953876084 1.189724117 0.296323625 0.137294429 0.350368752 5.33513271 0.038362369 0.11313881 1.62E-05 4.789736633 0.235848033 KHPEVDVLINFASLR ddPTM_HeLa_A486_30min_R1 1 KHPEVDVLINFASLR 15 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 86.39 0.0026363 6060800 14607 11629 9885.8 8399.3 16242 13163 14951 13326 11087 19044 FALSE FALSE TRUE 13583.12473 10707.47569 13713.84651 19553.99488 14204.77691 11539.08289 11210.10166 10291.9607 12048.03009 14275.25844 0.951515154 0.750072283 0.96067238 1.369782197 0.995062679 0.808327424 0.785281871 0.72096493 0.843979822 1 13.80122924 -6.24998361 7.124081378 0.811126351 1.009400534 0.227755046 0.15765485 0.233287083 72.95163136 0.058021999 0.055676629 5.62E-07 6.24998361 0.198274183 KHQEVQDQDPVFQGSDSSGYQS(ph)DHKK ddPTM_HeLa_A485_30min_R1 1 KHQEVQDQDPVFQGSDSSGYQSDHKK 26 2 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 KHQEVQDQDPVFQGS(0.009)DS(0.267)S(0.267)GY(0.145)QS(0.311)DHKK 87.21 0.0017993 335870000 55934 44956 19039 78548 60978 55619 98011 82145 45415 111680 TRUE FALSE FALSE 68376.32533 50213.21313 26082.31838 82838.87835 54906.81621 58531.12484 77070.14917 61998.80995 54529.37393 83840.23132 0.815555065 0.598915489 0.311095496 0.988056414 0.654898196 0.698126948 0.919250197 0.739487582 0.650396272 1 16.35535508 -5.273054406 24.99580197 0.790100394 0.577561345 0.286121679 0.166385959 1000.786308 2153713.287 0.046425806 0.069514226 5.33E-06 5.273054406 -0.212539049 KHRS(ph)PT(ph)PK ddPTM_HeLa_A486_30min_R1 1 KHRSPTPK 8 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 KHRS(1)PT(1)PK 83.397 0.033984 39966000 110670 32979 18948 42037 18107 97439 68207 52065 88565 176330 TRUE FALSE FALSE 102912.6045 30365.62393 26285.17305 97864.26043 15835.85122 85417.96687 51140.88718 40210.93607 96241.88551 132175.8203 0.778603865 0.229736603 0.198865216 0.740409707 0.119808988 0.646245029 0.386915603 0.304223087 0.728135337 1 17.01209875 -7.981056398 4.141997304 0.99837534 0.419241252 0.419449973 0.217715694 0.156702263 6.823422675 0.196981481 0.05172728 1.04E-08 7.981056398 -0.579134089 KHS(ph)DPHLLER ddPTM_HeLa_A485_30min_R1 2 KHSDPHLLER 10 1 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-14;Q9Y6M7-4;Q9Y6M7-3;Q9Y6M7-11;C9JRP1 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 KHS(1)DPHLLER;KHS(1)DPHLLER ; 109.84 0.00062748 1307570000 2644400 2281600 1272060 3185200 1811890 2695500 3832100 3822000 2180120 6347600 TRUE FALSE FALSE 3232637.657 2548413.273 1742647.929 3359199.411 1631491.87 2836632.212 3013340.53 2884648.507 2617650.087 4765260.139 0.678375905 0.534789959 0.365698383 0.704935158 0.342372047 0.595273318 0.632355935 0.60534964 0.549319452 1 22.18412354 -11.01685958 0.366419392 1.474319844 0.531665369 0.580778474 0.113323557 28.28015444 1.585254274 11.37354431 0.081186268 9.62E-12 11.01685958 -0.942654475 KHS(ph)DPHLLER ddPTM_HeLa_A486_30min_R1 2 KHSDPHLLER 10 1 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-14;Q9Y6M7-4;Q9Y6M7-3;Q9Y6M7-11;C9JRP1 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 KHS(1)DPHLLER;KHS(1)DPHLLER ; 100.22 0.0013824 1142570000 2047200 1785470 1280620 658560 2341400 2316000 2293100 2023800 2375900 4126700 TRUE FALSE FALSE 1903701.852 1643982.855 1776510.36 1533160.962 2047719.779 2030275.467 1719342.126 1563024.919 2581844.925 3093347.46 0.615418047 0.531457548 0.574300296 0.495631668 0.661975354 0.656336055 0.55581927 0.505285921 0.834644332 1 21.56073746 -7.941305612 3.999239782 0.997521487 0.576223683 0.867282907 0.055359712 0.064061451 2.054837062 0.055738659 0.014681055 1.14E-08 7.941305612 -0.421297804 KHS(ph)EEAEFTPPLK ddPTM_HeLa_A485_30min_R1 2 KHSEEAEFTPPLK 13 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 KHS(0.881)EEAEFT(0.119)PPLK;KHS(0.996)EEAEFT(0.004)PPLK ; 64.65 0.01586 226342000 423060 369510 226250 539820 391370 403230 573980 482510 289390 686440 TRUE FALSE FALSE 517168.2375 412720.9802 309949.29 569308.9997 352403.8286 424342.4993 451344.484 364173.666 347467.9186 515323.141 1.003580465 0.800897432 0.601465887 1.104761177 0.683850191 0.823449338 0.875847499 0.706689914 0.67427191 1 18.97511785 KHS(ph)EEAEFTPPLK ddPTM_HeLa_A486_30min_R1 1 KHSEEAEFTPPLK 13 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 KHS(0.881)EEAEFT(0.119)PPLK 61.641 0.021866 95758000 50495 40158 17716 19026 36263 43778 58235 53720 34806 72845 TRUE FALSE FALSE 46955.56126 36975.73383 24576.10965 44293.48952 31714.5564 38377.11546 43663.98705 41489.1287 37823.0121 54604.13786 0.859926795 0.677159924 0.450077789 0.811174597 0.580808665 0.702824309 0.799646121 0.759816569 0.692676665 1 15.73672266 -9.723873233 0.358591487 1.112780642 0.670604821 0.385787011 0.112902011 11.17783899 1.273249732 1.520512924 0.091675953 1.89E-10 9.723873233 -0.44217582 KHS(ph)EEAEFTPPLKCS(ph)PK ddPTM_HeLa_A485_30min_R1 1 KHSEEAEFTPPLKCSPK 17 2 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 2 0 KHS(1)EEAEFT(0.156)PPLKCS(0.844)PK 97.542 0.00035866 682040000 356310 190930 103550 767270 324310 263860 651680 460270 179870 822990 TRUE FALSE FALSE 435569.9302 213257.6026 141857.4541 809184.0173 292020.5577 277675.3016 512443.2443 347388.0608 215968.2591 617833.739 0.704995378 0.345169888 0.229604577 1.309711604 0.472652332 0.449433697 0.829419327 0.562267871 0.349557244 1 19.23685913 -11.09122194 2.455690089 1.692109631 0.586961624 0.151947828 0.294992158 50743095.97 19067022.92 195789792.9 0.077483916 8.11E-12 11.09122194 -1.105148008 KHS(ph)EEAEFTPPLKCS(ph)PK ddPTM_HeLa_A486_30min_R1 2 KHSEEAEFTPPLKCSPK 17 2 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 2 0 KHS(1)EEAEFT(0.19)PPLKCS(0.81)PK;KHS(1)EEAEFT(0.124)PPLKCS(0.876)PK ; 157.31 8.51E-09 1608520000 779070 661450 188116 709970 483500 959400 1437600 1152860 486550 2124600 TRUE FALSE FALSE 724461.2161 609034.293 260959.5531 1652846.04 422854.9215 841038.9825 1077897.275 890378.9448 528724.5458 1592586.331 0.45489604 0.382418385 0.163858968 1.03783764 0.265514599 0.528096321 0.67682188 0.559077349 0.331991136 1 20.60294015 -14 0.294875582 5.009232065 0.467643929 0.297092526 0.232771465 332.7425935 3.115275171 823.4373947 0.239032271 1.00E-14 14 -4.541588136 KHS(ph)PS(ph)PPPPT(ph)PTESR ddPTM_HeLa_A485_30min_R1 4 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 3 0 KHS(1)PS(0.999)PPPPT(0.968)PT(0.03)ES(0.003)R;KHS(0.999)PS(0.997)PPPPT(0.939)PT(0.059)ES(0.006)R;KHS(1)PS(0.999)PPPPT(0.508)PT(0.366)ES(0.126)R;KHS(1)PS(1)PPPPT(0.976)PT(0.02)ES(0.004)R ;;; 76.492 0.003241 1041050000 1005430 1122710 847100 1120710 1543620 1221510 1585930 1730890 993420 1489710 TRUE FALSE FALSE 1229084.435 1254001.168 1160477.541 1181931.55 1389931.773 1285466.375 1247083.1 1306386.514 1192790.282 1118352.713 1.099013237 1.121293089 1.037666853 1.056850433 1.242838468 1.149428405 1.115107144 1.168134613 1.066560011 1 20.09294384 -2.045059456 20.4519393 1.112833216 0.408796463 0 0.067248158 0 0 0.015453253 0 0.009014477 2.045059456 -0.704036753 KHS(ph)PS(ph)PPPPT(ph)PTESR ddPTM_HeLa_A486_30min_R1 3 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 3 0 KHS(1)PS(0.989)PPPPT(0.565)PT(0.417)ES(0.029)R;KHS(1)PS(1)PPPPT(0.991)PT(0.008)ES(0.002)R;KHS(1)PS(1)PPPPT(0.819)PT(0.133)ES(0.048)R ;; 76.614 0.0032086 938210000 1129150 1151790 919430 506198 1203920 1237530 1375890 1331210 1016680 1316300 TRUE FALSE FALSE 1050002.416 1060517.966 1275457.919 1178454.526 1052913.127 1084856.131 1031627.769 1028122.543 1104806.641 986689.9123 1.064166566 1.074823967 1.292663382 1.194351448 1.067116542 1.099490445 1.045544052 1.041991542 1.11971008 1 19.91223723 -5.775658805 24.10650943 1.065429161 1.160393094 0.32209385 0.066757302 198.0337104 335729.3238 0.022024374 0.025102965 1.68E-06 5.775658805 0.094963933 KHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_A485_30min_R1 9 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(0.981)PS(0.993)PPPPT(0.027)PTESR;KHS(1)PS(0.999)PPPPT(0.001)PTESR;KHS(1)PS(0.998)PPPPT(0.001)PT(0.001)ESR;KHS(0.999)PS(0.999)PPPPT(0.002)PTESR;KHS(1)PS(0.968)PPPPT(0.026)PT(0.006)ESR ;;;;;;;; 146.13 3.41E-08 33546690000 12902906 12283555 9863724 18429690 17333912 13823400 21225740 18891980 12369369 24128590 TRUE FALSE FALSE 15773112.93 13720009.9 13512725.97 19436457.3 15608086.86 14547171.85 16690687.25 14258692.28 14851787.9 18113776.57 0.870779921 0.757435086 0.745991645 1.073020705 0.861669393 0.803099883 0.921436079 0.787173908 0.8199167 1 24.11058403 -11.60804684 2.175681078 4.173096706 0.849158724 0.200590129 0.090464082 6073555.403 341562.0533 95656235.06 0.023355547 2.47E-12 11.60804684 -3.323937982 KHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_A486_30min_R1 10 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 KHS(0.998)PS(0.941)PPPPT(0.054)PT(0.007)ESR;KHS(1)PS(0.999)PPPPT(0.001)PTESR;KHS(1)PS(0.999)PPPPT(0.001)PTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(0.999)PPPPT(0.001)PTESR;KHS(1)PS(0.988)PPPPT(0.01)PT(0.002)ESR ;;;;;;;;; 158.44 1.13E-08 22330250000 7200000 7072030 4165361 3828356 6928560 8224980 9502300 9173180 5902991 10468000 TRUE FALSE FALSE 6695317.181 6511616.587 5778300.331 8912606.242 6059515.399 7210265.593 7124724.035 7084647.163 6414667.013 7846744.665 0.853260488 0.82984943 0.736394591 1.135834875 0.772233029 0.918886226 0.907984692 0.90287724 0.817494042 1 22.90366282 KHS(ph)PS(ph)PPPPTPTESRK ddPTM_HeLa_A486_30min_R1 2 KHSPSPPPPTPTESRK 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 KHS(0.999)PS(0.849)PPPPT(0.051)PT(0.051)ES(0.051)RK;KHS(1)PS(0.999)PPPPT(0.001)PTESRK ; 65.149 0.0098852 875960000 555820 437510 212967 321730 473460 460530 735950 713310 300010 815620 TRUE FALSE FALSE 516859.8883 402840.1142 295433.5259 749003.6993 414074.232 403714.4909 551807.5259 550904.8844 326015.1084 611383.4432 0.84539399 0.658899286 0.483221339 1.225096472 0.677274199 0.660329447 0.90255556 0.901079168 0.533241637 1 19.22171796 -11.50091068 2.093327062 3.575627642 0.76969792 0.105559901 0.204643673 8928140.801 451081.7956 109658527.2 0.050921903 3.16E-12 11.50091068 -2.805929721 KHS(ph)PSPPPPTPTESR ddPTM_HeLa_A485_30min_R1 5 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 KHS(0.846)PS(0.154)PPPPTPTESR;KHS(0.659)PS(0.341)PPPPTPTESR;KHS(0.974)PS(0.026)PPPPTPTESR;KHS(0.99)PS(0.01)PPPPTPTESR;KHS(0.751)PS(0.249)PPPPTPTESR ;;;; 122.49 2.23E-05 1130540000 340097 370339 302800 408723 502996 390574 594705 510888 356660 609559 TRUE FALSE FALSE 415750.4043 413646.9245 414818.3206 431050.5025 452915.9521 411023.8507 467641.4185 385591.917 428238.3905 457607.1594 0.90853125 0.903934556 0.906494385 0.941966256 0.989748396 0.898202404 1.021927671 0.842626495 0.935821002 1 18.8037501 -5.265059238 7.053067957 0.943523877 0.905980849 0.12555884 0.048763483 0.306083165 107.2567059 0.013219597 0.021090517 5.43E-06 5.265059238 -0.037543028 KHS(ph)PSPPPPTPTESR ddPTM_HeLa_A486_30min_R1 5 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 KHS(0.987)PS(0.013)PPPPTPTESR;KHS(0.975)PS(0.025)PPPPTPTESR;KHS(0.991)PS(0.009)PPPPTPTESR;KHS(0.802)PS(0.198)PPPPTPTESR;KHS(0.881)PS(0.119)PPPPTPTESR ;;;; 122.94 1.83E-05 1385690000 391884 405180 268446 125485 440169 430190 515887 485962 352095 481672 TRUE FALSE FALSE 364414.9553 373072.0612 372395.4804 292135.4217 384958.8996 377117.5317 386806.6161 375319.0611 382614.8781 361058.196 1.009297003 1.033274041 1.031400158 0.80910896 1.066196264 1.044478524 1.071313767 1.039497414 1.059704176 1 18.46187187 KHS(ph)QFIGYPITLYLEK ddPTM_HeLa_A486_30min_R1 1 KHSQFIGYPITLYLEK 16 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 KHS(0.533)QFIGY(0.434)PIT(0.033)LYLEK 100.45 0.00040625 33239000 90347 57210 29873 35427 50766 62556 77800 81544 50836 122180 TRUE FALSE FALSE 84014.14185 52676.47124 41440.62563 82475.84638 44398.45491 54838.47674 58333.61712 62978.21129 55242.50541 91585.33274 0.917331841 0.575162744 0.452481029 0.900535532 0.484776913 0.598769204 0.636931869 0.687645166 0.603180703 1 16.48282895 -10.32336876 3.658114934 1.001190502 0.644316102 0.339414186 0.145917854 96613099.63 147182168.6 1239644.546 0.034863805 4.75E-11 10.32336876 -0.356874401 KHSEEAEFTPPLKCS(ph)PK ddPTM_HeLa_A486_30min_R1 2 KHSEEAEFTPPLKCSPK 17 2 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 KHSEEAEFT(0.007)PPLKCS(0.993)PK;KHSEEAEFT(0.004)PPLKCS(0.996)PK ; 166.27 2.63E-12 1810730000 1875080 1536870 584820 1602010 1383170 2436720 3340100 3007000 1236750 3926700 TRUE FALSE FALSE 1743646.575 1415082.824 811277.966 3729560.241 1209679.921 2136102.261 2504371.652 2322371.742 1343952.486 2943428.761 0.592386199 0.480760004 0.275623442 1.267080179 0.410976456 0.725719028 0.85083481 0.789002191 0.456594195 1 21.48906628 -6.773671695 0.070306749 1.408309089 1.43E-21 0.139202695 0.266189947 65.42044428 2.879961177 24.99788807 30.8151885 1.68E-07 6.773671695 -1.408309089 KHSPS(ph)PPPPTPTESR ddPTM_HeLa_A485_30min_R1 1 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 KHS(0.137)PS(0.863)PPPPTPTESR 94.387 0.00077858 534170000 116960 133590 112960 125930 166880 134040 187530 182530 129030 212570 TRUE FALSE FALSE 142977.3485 149212.1884 154748.6047 132809.237 150264.8412 141058.1271 147462.6835 137764.2313 154925.1375 159580.2111 0.895959139 0.935029396 0.969723023 0.832241267 0.941625783 0.883932451 0.924066227 0.863291447 0.970829255 1 17.28392223 -7.944334442 6.273415048 0.999786745 0.907660644 0.422524721 0.03794608 0.157927968 11.97732362 0.035030298 0.009087176 1.14E-08 7.944334442 -0.092126101 KHSQFIGY(ph)PITLYLEK ddPTM_HeLa_A485_30min_R1 1 KHSQFIGYPITLYLEK 16 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 KHS(0.457)QFIGY(0.539)PIT(0.005)LYLEK 109.08 0.00010972 46891000 56671 53583 36023 59794 63007 76249 112520 111670 52077 77834 TRUE FALSE FALSE 69277.26844 59849.06574 49349.40674 63060.39481 56733.80185 80241.27974 88479.1828 84282.75741 62528.37622 58431.41623 1.185616795 1.024261769 0.844569752 1.079220715 0.97094689 1.373255774 1.514239916 1.442421951 1.070115706 1 15.83445664 -6.260608742 24.9962098 1.322297626 1.014549993 0.357080092 0.169019203 72.45292532 2180334.878 0.057386778 0.054224349 5.49E-07 6.260608742 -0.307747634 KHSQFIGY(ph)PITLYLEK ddPTM_HeLa_A486_30min_R1 1 KHSQFIGYPITLYLEK 16 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 KHS(0.423)QFIGY(0.497)PIT(0.08)LYLEK 107.66 0.0001196 40160000 94839 64085 29065 33948 57671 73051 90557 82343 56261 126650 TRUE FALSE FALSE 88191.27585 59006.67121 40319.74639 79032.65964 50437.36542 64038.71035 67898.68079 63595.29644 61137.74878 94936.01565 0.928954889 0.621541475 0.42470443 0.832483427 0.531277462 0.674546008 0.71520466 0.669875347 0.643988989 1 16.53466788 -10.42046704 2.883597174 1.007143134 0.664628317 0.351727979 0.133550033 21762802.05 25059456.1 1272409.362 0.033444795 3.80E-11 10.42046704 -0.342514817 KHSQFIGYPITLYLEK ddPTM_HeLa_A485_30min_R1 2 KHSQFIGYPITLYLEK 16 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 126.88 7.40E-06 98897000 179579 206161 139695 154210 198916 222492 284850 355670 167065 239130 FALSE FALSE TRUE 219525.729 230269.7356 191373.9937 162634.1018 179111.2246 234141.3371 223989.4705 268441.3748 200593.4131 179519.2919 1.222853136 1.282701893 1.06603581 0.905942198 0.997726889 1.304268386 1.247718104 1.495334413 1.117391958 1 17.45377936 -6.273432928 24.63983681 1.264824451 1.093358869 0.147905367 0.15636119 1039.146293 2134840.338 0.057038768 0.050684279 5.33E-07 6.273432928 -0.171465581 KHSQFIGYPITLYLEK ddPTM_HeLa_A486_30min_R1 2 KHSQFIGYPITLYLEK 16 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 128.9 6.04E-06 66036000 194654 150643 95717 67657 165309 152362 195957 187653 133564 198785 FALSE FALSE TRUE 181009.7598 138705.5 132781.1858 157508.9152 144574.4038 133565.1255 146926.486 144928.5083 145141.4351 149007.9421 1.214765852 0.930859779 0.8911014 1.05705047 0.970246295 0.89636246 0.98603124 0.972622709 0.974051671 1 17.1850297 -4.256975042 24.76351365 0.962762268 1.214765968 0.722719037 0.046541418 214.5836727 1190239.562 0.011706495 0.090193648 5.53E-05 4.256975042 0.2520037 KHT(ph)GERPYSCPHCPAR ddPTM_HeLa_A485_30min_R1 2 KHTGERPYSCPHCPAR 16 2 O15156;O15156-2 O15156 ZBTB7B Zinc finger and BTB domain-containing protein 7B 1 0 KHT(1)GERPYSCPHCPAR;KHT(1)GERPYSCPHCPAR ; 191.78 2.62E-18 158308000 136591 95358 71396 202997 132985 114313 162570 151491 99882 292940 TRUE FALSE FALSE 166975.1967 106509.2886 97808.35144 214086.2121 119744.5465 120298.2519 127835.5914 114337.5947 119927.4012 219915.4492 0.759269971 0.484319265 0.444754344 0.973493281 0.544502657 0.547020468 0.581294274 0.519916155 0.545334135 1 17.74658943 -10.18737887 3.591930239 1.000478798 0.596912179 0.397582858 0.147672304 48970237.49 83478804.9 272558.54 0.037930727 6.50E-11 10.18737887 -0.403566619 KHT(ph)GERPYSCPHCPAR ddPTM_HeLa_A486_30min_R1 1 KHTGERPYSCPHCPAR 16 2 O15156;O15156-2 O15156 ZBTB7B Zinc finger and BTB domain-containing protein 7B 1 0 KHT(1)GERPYSCPHCPAR 96.79 0.00045763 83806000 66891 58561 39061 24090 66321 76005 85334 89861 52494 105080 TRUE FALSE FALSE 62202.28633 53920.41308 54186.46529 56082.73744 58002.40176 66628.27586 63982.53063 69401.61195 57044.22219 78767.28404 0.78969698 0.684553412 0.687931112 0.712005474 0.736376815 0.845887689 0.812298296 0.881096927 0.724212125 1 16.26530891 -6.202346898 3.504760266 0.843787318 0.714657725 0.46617947 0.06961176 0.226671961 5.594244191 0.023061467 0.022455749 6.28E-07 6.202346898 -0.129129593 KHVTTAEGTPGTTDQEGPPPDGPPEK(ac)R ddPTM_HeLa_A485_30min_R1 1 KHVTTAEGTPGTTDQEGPPPDGPPEKR 27 2 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 0 1 KHVTTAEGTPGTTDQEGPPPDGPPEK(1)R 127.38 6.24E-12 5479700 2941.8 4558.3 3655.5 1958.7 4726.9 3754.4 4241.3 6698 4139.9 3687 FALSE TRUE FALSE 3596.193261 5091.353533 5007.821568 2065.698821 4256.273239 3950.974579 3335.111607 5055.304998 4970.739957 2767.898754 1.299250291 1.839429107 1.80925027 0.746305774 1.537727214 1.42742742 1.204925434 1.826405316 1.795853244 1 11.43457546 KHVTTAEGTPGTTDQEGPPPDGPPEK(ac)R ddPTM_HeLa_A486_30min_R1 1 KHVTTAEGTPGTTDQEGPPPDGPPEKR 27 2 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 0 1 KHVTTAEGTPGTTDQEGPPPDGPPEK(1)R 131.56 3.73E-12 4944000 3505.3 4190 3674.1 539.54 4190.5 3166.9 3956.4 4597.4 3510.6 4328.3 FALSE TRUE FALSE 3259.596571 3857.96914 5096.809916 1256.076387 3664.888415 2776.200077 2966.466873 3550.672381 3814.901635 3244.465507 1.004663654 1.189092358 1.570924365 0.387144318 1.129581562 0.855672551 0.914316046 1.094378218 1.175818213 1 11.66376511 -1.592943198 11.82857491 1.03071904 10.94986887 0 0.284918559 0 0 0.064527964 0 0.025530352 1.592943198 9.919149827 KIAELEEEQSQGSTTNS(ph)DWMK ddPTM_HeLa_A485_30min_R1 1 KIAELEEEQSQGSTTNSDWMK 21 1 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KIAELEEEQSQGSTT(0.006)NS(0.994)DWMK 182.89 2.25E-19 268820000 156870 108720 76521 166700 176070 164780 235430 309170 111560 252400 TRUE FALSE FALSE 191765.1903 121433.8583 104829.3022 175806.3989 158539.8526 173407.626 185128.4572 233345.5727 133949.0687 189481.3251 1.012053247 0.640875074 0.553243451 0.927829689 0.836704369 0.915170009 0.977027457 1.231496416 0.70692491 1 17.53169614 -5.983792644 1.333446948 0.989865714 0.742636666 0.220251562 0.168496757 0.581099769 2.142377978 0.071153546 0.081562125 1.04E-06 5.983792644 -0.247229048 KIAELEEEQSQGSTTNS(ph)DWMK ddPTM_HeLa_A486_30min_R1 1 KIAELEEEQSQGSTTNSDWMK 21 1 P46821;D6RA32;D6RA40 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KIAELEEEQSQGST(0.001)T(0.003)NS(0.996)DWMK 203.78 8.82E-27 365180000 160250 133660 72145 97082 146070 190570 222820 223060 107550 229530 TRUE FALSE FALSE 149017.3025 123068.2948 100081.4761 226011.8023 127748.5386 167059.411 167068.0793 172274.1074 116872.5206 172054.194 0.866106772 0.715287968 0.581685769 1.313608213 0.742490116 0.970969711 0.971020092 1.001278163 0.679277371 1 17.39250353 -5.168737775 23.73809039 0.946914007 0.720453915 0.277985917 0.171848988 50.10162104 12825.59564 0.044564392 0.077187801 6.78E-06 5.168737775 -0.226460092 KIAFAITAIK ddPTM_HeLa_A485_30min_R1 1 KIAFAITAIK 10 1 P62269;A0A0G2JQH2;Q5GGW2 P62269 RPS18 40S ribosomal protein S18 0 0 104.79 0.00076549 0 39446 29173 24153 24498 31077 33260 40244 46448 20836 37577 FALSE FALSE TRUE 48220.62661 32584.52858 33088.19979 25836.26371 27982.86476 35001.44217 31645.54064 35056.55517 25017.59408 28209.74545 1.709360572 1.15508056 1.172935071 0.915863057 0.991957365 1.240757107 1.121794618 1.242710794 0.886842248 1 14.78390603 -4.14084576 2.143475715 1.078862205 2.02823176 0.718538483 0.118893091 0.573087013 2.230790351 0.031799154 1.168555027 7.23E-05 4.14084576 0.949369554 KIALESEGRPEEQMES(ph)DNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A485_30min_R1 3 KIALESEGRPEEQMESDNCSGGDDDWTHLSSK 32 2 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 KIALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;KIALES(0.003)EGRPEEQMES(0.99)DNCS(0.771)GGDDDWT(0.236)HLSSK;KIALES(0.004)EGRPEEQMES(0.996)DNCS(1)GGDDDWTHLSSK ;; 222.75 3.40E-39 1106290000 368653 458426 400680 221780 965585 428589 644934 721519 559317 472829 TRUE FALSE FALSE 450658.588 512034.9329 548908.2057 233895.2798 869447.967 451029.2573 507138.5823 544565.334 671566.7915 354961.4321 1.269598743 1.442508641 1.5463883 0.658931531 2.449415312 1.270642995 1.428714605 1.53415353 1.891942986 1 18.43730275 -5.728777374 24.99999937 1.597908695 1.267228035 0.150439198 0.422787849 415.4432421 317984.8348 0.120456669 0.155497815 1.87E-06 5.728777374 -0.33068066 KIALESEGRPEEQMES(ph)DNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A486_30min_R1 3 KIALESEGRPEEQMESDNCSGGDDDWTHLSSK 32 2 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 KIALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;KIALESEGRPEEQMES(1)DNCS(1)GGDDDWTHLSSK;KIALES(0.017)EGRPEEQMES(0.983)DNCS(0.999)GGDDDWT(0.001)HLSSK ;; 155.86 3.45E-10 792740000 389610 513410 418100 45973 681580 448980 535340 502210 418100 203816 TRUE FALSE FALSE 362300.3509 472725.5218 579999.5171 107027.4673 596089.8809 393589.4125 401392.2698 387867.7462 454341.2446 152779.147 2.371399226 3.094175685 3.796326453 0.700537144 3.901644254 2.576198521 2.627271311 2.53874795 2.973843313 1 17.22108812 -10.21592432 3.618551771 0.99751418 2.734568615 0.277553567 0.837859203 170572142.9 284005586.7 4879348.208 0.204666152 6.08E-11 10.21592432 1.737054435 KIALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A485_30min_R1 6 KIALESEGRPEEQMESDNCSGGDDDWTHLSSK 32 2 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 KIALESEGRPEEQMESDNCS(0.999)GGDDDWTHLSSK;KIALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK;KIALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK;KIALESEGRPEEQMES(0.019)DNCS(0.981)GGDDDWTHLSSK;KIALESEGRPEEQMES(0.112)DNCS(0.869)GGDDDWT(0.017)HLS(0.001)S(0.001)K;KIALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK ;;;;; 278.63 5.13E-78 7261180000 1358851 1715338 1652258 700629 3103359 1536457 2170812 2407857 1731212 1617157 TRUE FALSE FALSE 1661122.717 1915931.858 2263496.99 738902.5882 2794377.681 1616903.513 1707000.282 1817326.295 2078650.369 1214029.521 1.368272095 1.578159199 1.864449711 0.608636425 2.301737834 1.331848595 1.406061592 1.496937482 1.712190957 1 20.21137207 -10.15176598 8.009556966 0.999999917 1.517432721 0.126456415 0.408974135 5.68E-07 6.07E-08 0.370568366 0.089876016 7.05E-11 10.15176598 0.517432804 KIALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_A486_30min_R1 5 KIALESEGRPEEQMESDNCSGGDDDWTHLSSK 32 2 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 KIALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK;KIALESEGRPEEQMESDNCS(1)GGDDDWTHLSSK;KIALES(0.001)EGRPEEQMES(0.043)DNCS(0.957)GGDDDWTHLSSK;KIALES(0.005)EGRPEEQMES(0.149)DNCS(0.841)GGDDDWT(0.005)HLSSK;KIALESEGRPEEQMES(0.007)DNCS(0.993)GGDDDWTHLSSK ;;;; 276.24 6.26E-78 5610550000 1218240 1381439 1088963.7 140117 1775616 1054523 1437929 1352253 1192431 572053 TRUE FALSE FALSE 1132847.667 1271968.743 1510639.608 326199.4571 1552901.684 924426.6739 1078143.955 1044374.511 1295791.879 428807.2054 2.641857816 2.966295171 3.52288765 0.760713563 3.621444941 2.155809563 2.514286005 2.435533961 3.021851925 1 18.70996962 -10.29249898 3.904058749 0.997213131 2.614676842 0.290327262 0.762791203 249315248.9 284687478.4 7538201.155 0.180475444 5.10E-11 10.29249898 1.617463712 KIALESEGRPEEQMESDNCSGGDDDWTHLS(ph)SK ddPTM_HeLa_A485_30min_R1 1 KIALESEGRPEEQMESDNCSGGDDDWTHLSSK 32 2 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 KIALESEGRPEEQMESDNCSGGDDDWT(0.019)HLS(0.814)S(0.168)K 161.4 1.44E-14 578930000 89398 78246 57836 114510 102330 84357 147200 116350 87126 184080 TRUE FALSE FALSE 109284.2767 87396.18905 79231.94316 120765.3913 92141.6659 88773.80208 115749.5175 87814.98007 104611.389 138192.2437 0.79081339 0.632424705 0.573345804 0.873894135 0.666764381 0.642393521 0.837597787 0.635455201 0.756998991 1 17.07631712 -13.99999992 0.322599669 3.813325854 0.696556518 0.46134331 0.093725405 294.0212602 2.596975761 565.0481185 0.081375678 1.00E-14 13.99999992 -3.116769335 KIALESEGRPEEQMESDNCSGGDDDWTHLS(ph)SK ddPTM_HeLa_A486_30min_R1 2 KIALESEGRPEEQMESDNCSGGDDDWTHLSSK 32 2 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 KIALESEGRPEEQMESDNCSGGDDDWTHLS(0.981)S(0.019)K;KIALESEGRPEEQMESDNCSGGDDDWTHLS(0.997)S(0.003)K ; 314.91 1.00E-109 1140180000 355620 401360 217576 152862 413580 471450 605760 580310 345260 560510 TRUE FALSE FALSE 330692.8744 369554.7719 301827.2541 355870.4612 361704.9399 413287.2924 454192.4409 448186.0811 375187.4148 420154.6477 0.787074179 0.879568449 0.718371808 0.84699875 0.860885252 0.983655172 1.081012535 1.066716942 0.892974567 1 18.68056092 -6.178711213 2.297735927 1.01809468 0.807564442 0.704529186 0.061192398 0.168062273 1.740999695 0.02308841 0.022501652 6.63E-07 6.178711213 -0.210530239 KICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_HeLa_A485_30min_R1 2 KICTLPSPPSPLASLAPVADSSTR 24 1 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 KICTLPSPPS(1)PLASLAPVADSSTR;KICTLPSPPS(1)PLASLAPVADSSTR ; 200.79 9.83E-29 2269540000 1962970 2071580 1873540 2256720 2219100 2149530 2662000 2470100 1854230 2917700 TRUE FALSE FALSE 2399625.904 2313833.261 2566640.411 2379998.899 1998158.612 2262076.067 2093241.953 1864304.102 2226356.953 2190371.086 1.095533957 1.056365871 1.171783369 1.086573373 0.912246616 1.032736453 0.955656312 0.85113619 1.016429119 1 21.06274388 -5.685754646 6.375833879 0.957433495 1.106229041 0.604103816 0.056028214 0.141606306 9.380710008 0.016624339 0.02142861 2.06E-06 5.685754646 0.148795545 KICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_HeLa_A486_30min_R1 2 KICTLPSPPSPLASLAPVADSSTR 24 1 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 KICTLPSPPS(1)PLASLAPVADSSTR;KICTLPSPPS(0.998)PLAS(0.002)LAPVADSSTR ; 145.86 1.93E-09 1992700000 1163910 1051390 657470 581250 976710 1220170 1394640 1298430 884410 1829950 TRUE FALSE FALSE 1082325.919 968074.0273 912059.9917 1353179.375 854201.9243 1069637.831 1045686.321 1002805.834 961071.3709 1371718.609 0.789029115 0.705738058 0.664903126 0.986484667 0.622723873 0.77977934 0.76231839 0.731057979 0.700633034 1 20.38755313 -10.48044242 3.780350923 1.002720853 0.749441417 0.39510878 0.093100561 91078976.14 7024.217429 2157545.292 0.022208491 3.31E-11 10.48044242 -0.253279436 KIDAGTMAEPS(ph)ASPSK ddPTM_HeLa_A486_30min_R1 1 KIDAGTMAEPSASPSK 16 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 KIDAGTMAEPS(0.5)AS(0.5)PS(0.001)K 141.47 5.73E-08 270770000 747410 666890 312340 346590 632810 744460 957000 913660 467100 1106500 TRUE FALSE FALSE 695020.4186 614043.2076 433286.4128 806879.0357 553437.0691 652616.0943 717548.4779 705639.5631 507588.6041 829425.1979 0.837954309 0.740323792 0.522393597 0.972817124 0.667253745 0.786829356 0.865115359 0.850757325 0.611976349 1 19.66175235 -11.21807132 2.383404766 1.781597331 0.763875095 0.243368552 0.125994608 14954422.82 3103525.944 62965244.48 0.032242701 6.05E-12 11.21807132 -1.017722236 KIDAGTMAEPSAS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 KIDAGTMAEPSASPSK 16 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 KIDAGTMAEPS(0.001)AS(0.997)PS(0.001)K;KIDAGTMAEPSAS(0.999)PSK;KIDAGTMAEPS(0.007)AS(0.992)PS(0.001)K;KIDAGTMAEPSAS(0.999)PS(0.001)K ;;; 184.38 5.64E-18 1938620000 3534170 3107210 2096980 5028500 4047000 3990580 6000600 5724000 2991380 6728300 TRUE FALSE FALSE 4320333.924 3470571.18 2872740.165 5303194.222 3644066.47 4199520.598 4718522.79 4320180.025 3591722.527 5051058.635 0.855332364 0.687097781 0.568740213 1.049917375 0.721446084 0.831413947 0.934165119 0.855301896 0.711083119 1 22.26815436 -5.248581593 24.99097494 0.86051291 0.702060906 0.287702398 0.120328123 1052.977632 2046611.829 0.031927225 0.054867317 5.64E-06 5.248581593 -0.158452004 KIDAGTMAEPSAS(ph)PSK ddPTM_HeLa_A486_30min_R1 3 KIDAGTMAEPSASPSK 16 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 KIDAGTMAEPS(0.006)AS(0.992)PS(0.001)K;KIDAGTMAEPS(0.001)AS(0.999)PSK;KIDAGTMAEPS(0.003)AS(0.966)PS(0.031)K ;; 163.85 3.86E-12 1765510000 3762060 3398020 1855930 1918420 3328840 4262400 5309700 4829800 2903490 6243700 TRUE FALSE FALSE 3498359.021 3128748.52 2574595.8 4466178.712 2911305.847 3736548.425 3981156.9 3730159.974 3155166.851 4680236.88 0.747474778 0.668502172 0.550099464 0.95426339 0.622042414 0.798367373 0.850631496 0.797002389 0.674146829 1 22.15815012 -14 0.138068733 1.855318004 0.649439834 0.334008514 0.110997068 162.3857825 1.379858399 38.49652191 0.702048068 1.00E-14 14 -1.205878169 KIDAGTMAEPSAS(ph)PSKR ddPTM_HeLa_A485_30min_R1 1 KIDAGTMAEPSASPSKR 17 2 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 KIDAGTMAEPS(0.04)AS(0.946)PS(0.014)KR 152.38 1.70E-08 315500000 226240 201370 148800 325740 280880 284820 378700 378090 201190 428150 TRUE FALSE FALSE 276566.3075 224918.4698 203847.3121 343534.3514 252914.601 299732.7348 297787.6513 285362.8347 241566.9876 321420.0845 0.860451231 0.699764827 0.634208383 1.068801758 0.786866201 0.932526464 0.926474933 0.887818927 0.751561583 1 18.29410056 -5.245179039 24.99773268 0.899826515 0.728303822 0.387468484 0.101185416 862.1302742 1325388.833 0.026599293 0.045894508 5.69E-06 5.245179039 -0.171522693 KIDS(ph)PPIRR ddPTM_HeLa_A485_30min_R1 2 KIDSPPIRR 9 2 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 KIDS(1)PPIRR;KIDS(1)PPIRR ; 105.25 0.00052188 587660000 468600 468000 353260 603300 586550 508370 754510 765190 425870 917320 TRUE FALSE FALSE 572838.4533 522728.5289 483945.5744 636256.7514 528151.0225 534987.4671 593302.7747 577525.9527 511338.2027 688649.006 0.831829348 0.759063796 0.702746348 0.923920235 0.7669379 0.776865228 0.861545968 0.838636152 0.742523692 1 19.39340932 -10.80720298 2.623856166 1.061988107 0.801232989 0.487168269 0.06141623 29814470.79 20817476.66 11741680.29 0.016503195 1.56E-11 10.80720298 -0.260755119 KIDS(ph)PPIRR ddPTM_HeLa_A486_30min_R1 4 KIDSPPIRR 9 2 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 KIDS(1)PPIRR;KIDS(1)PPIRR;KIDS(1)PPIRR;KIDS(1)PPIRR ;;; 132.86 9.61E-05 1247850000 1062760 1006490 626796 645023 1073880 1139850 1430930 1304740 789520 1717360 TRUE FALSE FALSE 988266.0121 926732.0668 869508.1974 1501646.142 939183.9569 999226.8961 1072896.179 1007679.184 857956.2293 1287321.878 0.76769146 0.719891492 0.675439618 1.166488481 0.729564201 0.776205946 0.833432724 0.782771738 0.666465974 1 20.29594139 KIDTHPS(ph)PSHSSTVK ddPTM_HeLa_A485_30min_R1 5 KIDTHPSPSHSSTVK 15 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477;H0Y594 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 KIDT(0.001)HPS(0.986)PS(0.014)HSSTVK;KIDT(0.001)HPS(0.995)PS(0.004)HSSTVK;KIDTHPS(0.939)PS(0.061)HSSTVK;KIDT(0.001)HPS(0.794)PS(0.206)HSSTVK;KIDTHPS(0.979)PS(0.021)HSSTVK ;;;; 211.49 6.00E-26 8461410000 5697020 8667640 7321180 2316340 11099000 6450050 8530690 8960600 7770030 5867920 TRUE FALSE FALSE 6964302.445 9681245.1 10029589.14 2442875.789 9993944.589 6787764.644 6708038.392 6762998.8 9329403.75 4405155.535 1.580943599 2.197707895 2.276784341 0.554549271 2.268692787 1.540868328 1.522769931 1.535246315 2.117837537 1 22.07076153 -11.02425221 2.619546566 0.159636199 1.72596526 0.163025285 0.497918615 28083693.02 9594367.195 141932532.5 0.123210292 9.46E-12 11.02425221 1.566329061 KIDTHPS(ph)PSHSSTVK ddPTM_HeLa_A486_30min_R1 3 KIDTHPSPSHSSTVK 15 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477;H0Y594 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 KIDT(0.001)HPS(0.959)PS(0.04)HSSTVK;KIDT(0.001)HPS(0.965)PS(0.034)HSSTVK;KIDTHPS(0.71)PS(0.29)HSSTVK ;; 181.14 7.96E-18 5818410000 7041600 6509130 4973040 418558 6980700 4500620 5506770 5191550 6179190 1815910 TRUE FALSE FALSE 6548020.203 5993322.833 6898734.271 974424.1768 6105115.514 3945379.263 4128917.901 4009547.396 6714807.164 1361194.316 4.810496285 4.402988435 5.068148013 0.715859716 4.485116812 2.898468805 3.033305276 2.945609857 4.933026155 1 20.3764416 -1 0.069454622 3.10E-14 11.49294539 0.253778733 1.305924838 410.9926909 2.11401978 61.6120609 462.6319732 0.1 1 11.49294539 KIDTHPS(ph)PSHSSTVKDSLIELK ddPTM_HeLa_A485_30min_R1 2 KIDTHPSPSHSSTVKDSLIELK 22 2 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y594 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 KIDTHPS(0.987)PS(0.013)HSSTVKDSLIELK;KIDT(0.051)HPS(0.913)PS(0.036)HSSTVKDSLIELK ; 182.54 7.02E-20 972760000 107263 217331 126130 75087 269067 250901 313066 636280 167095 148334 TRUE FALSE FALSE 131123.2843 242745.9699 172790.7357 79188.81268 242277.7447 264037.7884 246176.8916 480231.3324 200629.4338 111357.0637 1.177503069 2.179888387 1.55168186 0.711125186 2.175683668 2.371091511 2.210698481 4.312535877 1.801676761 1 16.76483355 -5.970100691 10.86471107 2.50897192 1.466795371 0.200846264 0.854900132 0.759635497 270.7478435 0.261632372 0.296023418 1.07E-06 5.970100691 -1.042176549 KIEEAMDGS(ph)ETPQLFTVLPEKR ddPTM_HeLa_A485_30min_R1 1 KIEEAMDGSETPQLFTVLPEKR 22 2 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KIEEAMDGS(0.652)ET(0.348)PQLFT(0.001)VLPEKR 60.419 0.02335 71115000 60355 53620 37907 68956 70339 62179 96343 96315 45802 84668 TRUE FALSE FALSE 73780.76153 59890.39257 51930.37674 72722.89167 63335.80218 65434.59629 75758.531 72693.59523 54994.04128 63561.8258 1.160771589 0.942238393 0.817005743 1.144128426 0.996444035 1.029463762 1.19188727 1.143667513 0.8652055 1 15.95587295 -5.297164131 24.99908067 1.061410488 0.97022827 0.084417697 0.117774748 1327.330605 928822.267 0.03351047 0.049706117 5.04E-06 5.297164131 -0.091182218 KIEEAMDGSET(ph)PQLFTVLPEK ddPTM_HeLa_A485_30min_R1 2 KIEEAMDGSETPQLFTVLPEK 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KIEEAMDGS(0.005)ET(0.995)PQLFTVLPEK;KIEEAMDGS(0.004)ET(0.996)PQLFTVLPEK ; 208.11 8.17E-27 264900000 336770 178392 163940 462940 298360 249340 373570 248110 207250 527980 TRUE FALSE FALSE 411683.3247 199253.3926 224588.2281 488229.24 268654.2308 262395.0568 293753.7177 187260.6335 248843.174 396364.3028 1.038648843 0.502702668 0.566620724 1.231768947 0.677796232 0.662004764 0.741120519 0.472445758 0.627814292 1 18.59646751 -5.95021416 24.99999656 0.670190432 0.812381648 0.068392289 0.231981289 311.1654176 156250.3058 0.072607651 0.08232932 1.12E-06 5.95021416 0.142191216 KIEEAMDGSET(ph)PQLFTVLPEK ddPTM_HeLa_A486_30min_R1 2 KIEEAMDGSETPQLFTVLPEK 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KIEEAMDGS(0.014)ET(0.986)PQLFTVLPEK;KIEEAMDGS(0.006)ET(0.994)PQLFTVLPEK ; 179.86 4.02E-19 264740000 298025 356580 172766 147004 296989 442800 473050 425540 323644 439840 TRUE FALSE FALSE 277134.9865 328323.3022 239665.622 342232.7412 259737.8703 388171.8381 354687.8866 328653.8315 351697.7225 329701.2011 0.840564079 0.995820764 0.726917649 1.038008779 0.787797768 1.177344325 1.075785849 0.996823276 1.066716534 1 18.33079962 -6.258260018 24.99823485 1.063913692 0.884893019 0.477952559 0.096798543 252.1195754 1982334.334 0.030835045 0.029622968 5.52E-07 6.258260018 -0.179020673 KIEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_A485_30min_R1 3 KIEEAMDGSETPQLFTVLPEKR 22 2 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KIEEAMDGSET(1)PQLFTVLPEKR;KIEEAMDGSET(1)PQLFTVLPEKR;KIEEAMDGSET(1)PQLFTVLPEKR ;; 317.59 1.76E-102 1953630000 2111640 1715830 1282480 2107900 2287960 2259290 3555840 3533520 1507430 2721850 TRUE FALSE FALSE 2581367.033 1916481.393 1756922.72 2223049.24 2060162.669 2377582.931 2796105.735 2666918.68 1809957.374 2043342.887 1.263305855 0.93791473 0.859827654 1.087947233 1.008231502 1.163575113 1.368397714 1.305174328 0.885782502 1 20.96249989 -6.285544351 6.689900272 1.178241668 1.019724852 0.088081935 0.163130166 0.343520874 62.98108762 0.057767985 0.052141647 5.18E-07 6.285544351 -0.158516815 KIEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_A486_30min_R1 4 KIEEAMDGSETPQLFTVLPEKR 22 2 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KIEEAMDGS(0.001)ET(0.999)PQLFTVLPEKR;KIEEAMDGSET(1)PQLFTVLPEKR;KIEEAMDGSET(1)PQLFTVLPEKR;KIEEAMDGS(0.019)ET(0.981)PQLFTVLPEKR ;;; 271.18 8.18E-73 3617470000 2408630 2349520 1409390 1174766 2517050 2699850 3463700 3308460 1884680 3282790 TRUE FALSE FALSE 2239797.475 2163335.478 1955143.553 2734914.617 2201338.118 2366769.957 2597045.625 2555195.881 2048045.58 2460758.017 0.91020631 0.879133773 0.794528978 1.111411443 0.894577241 0.961805241 1.055384401 1.03837755 0.832282397 1 21.23067136 -5.243319164 24.9952332 0.984652478 0.863074102 0.33635332 0.079512744 972.6973748 1341748.373 0.021190883 0.036603436 5.71E-06 5.243319164 -0.121578376 KIEEIKDFLLTAR ddPTM_HeLa_A485_30min_R1 1 KIEEIKDFLLTAR 13 2 J3KSP2;J3KT73;J3QL01;P63173 J3KSP2 RPL38 60S ribosomal protein L38 0 0 132.08 1.45E-05 50084000 52173 50049 41812 57613 65700 64500 82802 90865 45323 86202 FALSE FALSE TRUE 63778.70386 55901.79518 57279.99874 60760.25231 59158.67731 67877.12026 65110.67627 68580.21628 54418.91037 64713.42783 0.98555595 0.863836101 0.885133127 0.938912593 0.914163865 1.048887728 1.006138578 1.05975249 0.840921462 1 15.98177748 -6.232603443 23.39135111 0.99581198 0.91392701 0.250065382 0.063335537 420.9606075 341477.5431 0.020356925 0.02035178 5.85E-07 6.232603443 -0.08188497 KIEEIKDFLLTAR ddPTM_HeLa_A486_30min_R1 2 KIEEIKDFLLTAR 13 2 J3KSP2;J3KT73;J3QL01;P63173 J3KSP2 RPL38 60S ribosomal protein L38 0 0 ; ; 198.16 1.80E-21 108023000 227319 199079 118665 100453 371030 231270 272890 263440 164436 285420 FALSE FALSE TRUE 211385.112 183303.255 164615.266 233859.6606 324491.9577 202738.2588 204610.0357 203460.4629 178689.4449 213948.9742 0.988016478 0.856761551 0.769413672 1.09306278 1.516679194 0.947600985 0.956349692 0.950976576 0.835196549 1 17.70690724 -3.326008243 19.94136647 0.99536158 0.985823312 0 0.195724637 0 0 0.048455649 0 0.000472054 3.326008243 -0.009538268 KIEIDNKVS(ph)DEEDKTSEGQER ddPTM_HeLa_A486_30min_R1 1 KIEIDNKVSDEEDKTSEGQER 21 3 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 0 KIEIDNKVS(0.999)DEEDKTSEGQER 104.33 0.00075232 243430000 85656 56474 23203 97828 48527 106940 150540 119480 50219 264350 TRUE FALSE FALSE 79651.95673 51998.79457 32187.823 227748.528 42440.29116 93746.83009 112873.2998 92277.01223 54572.02335 198155.0394 0.401967858 0.262414697 0.16243757 1.149345122 0.214177198 0.47309839 0.569621142 0.465680876 0.275400633 1 17.59627013 -10.79818233 2.741635918 1.15434742 0.447623689 0.283024034 0.266485906 315807441.6 242892149.4 325383499.6 0.065790227 1.59E-11 10.79818233 -0.706723731 KIEPELDGSAQVTSHDASTNGLINFIK ddPTM_HeLa_A486_30min_R1 2 KIEPELDGSAQVTSHDASTNGLINFIK 27 1 P06744-2;P06744;A0A2U3TZU2;K7EQ48 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 146.5 3.53E-17 25281000 19129.5 17545.3 13617.5 6496.7 21715.3 20386.1 24901 22053 15039 23244 FALSE FALSE TRUE 17788.62083 16154.94653 18890.56069 15124.64593 18991.56459 17871.07025 18670.50642 17032.01331 16342.59263 17423.55111 1.020952659 0.92719024 1.084196934 0.868057598 1.089993909 1.025684727 1.071567232 0.977528244 0.937959922 1 14.08875107 -2.074217777 13.05401993 1.001488609 1.042598105 0 0.069631503 0 0 0.015203026 0 0.00842912 2.074217777 0.041109497 KIESFGS(ph)PK ddPTM_HeLa_A485_30min_R1 4 KIESFGSPK 9 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 KIESFGS(1)PK;KIESFGS(1)PK;KIES(0.001)FGS(0.999)PK;KIES(0.002)FGS(0.998)PK ;;; 130.15 0.00014351 3571110000 6235060 4816150 3404410 11075770 7057690 6384240 10802400 10964540 5155830 15274600 TRUE FALSE FALSE 7622027.586 5379356.848 4663842.928 11680811.27 6355001.603 6718508.934 8494378.993 8275469.373 6190557.789 11466923.33 0.66469683 0.469119457 0.406721384 1.018652601 0.554202851 0.585903362 0.740772285 0.721681757 0.539862142 1 23.45097502 -14 0.208306847 2.695324888 0.583726876 0.307258243 0.163364653 185.8628624 1.850973248 131.9466032 0.361857654 1.00E-14 14 -2.111598012 KIESFGS(ph)PK ddPTM_HeLa_A486_30min_R1 4 KIESFGSPK 9 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 KIESFGS(1)PK;KIESFGS(1)PK;KIESFGS(1)PK;KIES(0.004)FGS(0.996)PK ;;; 118.73 0.00076918 2312390000 5317230 4539160 2173900 3548100 4260770 6010150 7898010 7603720 3447580 11071800 TRUE FALSE FALSE 4944519.635 4179460.43 3015692.299 8260156.111 3726344.496 5268678.8 5921844.361 5872518.944 3746419.01 8299349.215 0.59577197 0.503588935 0.363364912 0.995277569 0.448992373 0.634830354 0.713531171 0.707587883 0.451411179 1 22.98456678 -14 0.285426465 3.937136288 0.583006085 0.317680175 0.172270392 291.6994309 2.775796353 509.5865978 0.188205461 1.00E-14 14 -3.354130202 KIFLAQKPAPLLES(ph)PFKDR ddPTM_HeLa_A485_30min_R1 1 KIFLAQKPAPLLESPFKDR 19 3 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 KIFLAQKPAPLLES(1)PFKDR 80.303 0.0023975 72304000 95434 72801 40121 124140 77011 90263 132480 130970 69251 154390 TRUE FALSE FALSE 116662.9641 81314.44367 54963.42747 130921.4539 69343.51444 94989.03111 104174.5657 98849.40215 83149.04049 115903.4143 1.006553299 0.701570736 0.474217501 1.129573746 0.598287072 0.819553347 0.898804978 0.85286014 0.717399405 1 16.82256354 -13.99999997 0.274364838 2.431007334 0.782463756 0.093215771 0.181578948 532.2869894 5.149421246 432.5873421 0.212071358 1.00E-14 13.99999997 -1.648543578 KIFLAQKPAPLLES(ph)PFKDR ddPTM_HeLa_A486_30min_R1 2 KIFLAQKPAPLLESPFKDR 19 3 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 KIFLAQKPAPLLES(1)PFKDR;KIFLAQKPAPLLES(1)PFKDR ; 103.67 0.00010257 198164000 352440 289020 116547 209780 226360 306530 407760 375450 212579 583940 TRUE FALSE FALSE 327735.776 266117.0026 161677.1196 488378.4417 197967.8181 268713.4452 305734.1352 289968.231 231005.5189 437717.6232 0.748737905 0.607965018 0.369363971 1.115738585 0.452272898 0.613896793 0.698473443 0.662455007 0.527750099 1 18.73964094 -10.29583805 5.195464245 1.000078071 0.644415497 0.238158947 0.190976247 0.000164765 2.23E-05 0.176412698 0.04277701 5.06E-11 10.29583805 -0.355662575 KIFVGTK ddPTM_HeLa_A485_30min_R1 2 KIFVGTK 7 1 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 ; ; 103.56 0.0034183 0 382910 455340 372580 392640 531110 509130 626590 698310 403530 555170 FALSE FALSE TRUE 468087.0085 508588.0521 510412.8463 414088.929 478230.8236 535787.2595 492713.9277 527048.3776 484514.7696 416776.3361 1.123113209 1.220290136 1.22466849 0.99355192 1.147451959 1.285551057 1.182202263 1.264583259 1.162529461 1 18.66891384 -6.03874343 24.81731137 1.198021486 1.141927058 0.018567567 0.093899092 1425.538735 913133.3583 0.0305042 0.030510743 9.15E-07 6.03874343 -0.056094429 KIFVGTK ddPTM_HeLa_A486_30min_R1 2 KIFVGTK 7 1 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 ; ; 103.56 0.0034183 0 400460 402170 288960 138602 462360 390850 449440 432080 361700 471230 FALSE FALSE TRUE 372389.822 370300.5845 400853.0506 322672.4606 404366.4975 342630.9009 336985.3583 333704.8162 393052.4472 353230.9408 1.054238967 1.048324316 1.134818625 0.913488665 1.144765225 0.969991191 0.954008608 0.944721364 1.112735046 1 18.43025219 KIHPQTIIAGWR ddPTM_HeLa_A486_30min_R1 1 KIHPQTIIAGWR 12 1 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 130.01 0.00022072 9020500 21151 18309 18438 8694.6 25139 20260 24024 24269 16621 23930 FALSE FALSE TRUE 19668.42412 16858.12816 25577.68739 20241.4682 21985.83221 17760.52719 18012.9411 18743.47849 18061.72166 17937.77224 1.096480871 0.939811696 1.42591215 1.128427094 1.225672392 0.990118893 1.004190535 1.04491674 1.006909967 1 14.13071311 -6.271088742 24.65588601 1.011719722 1.163503531 0.312757913 0.114135665 761.6111544 1946051.04 0.040817257 0.036475348 5.36E-07 6.271088742 0.151783809 KIHSQEEALR ddPTM_HeLa_A485_30min_R1 1 KIHSQEEALR 10 1 O00764-2;O00764;F2Z2Y4;O00764-3 O00764-2 PDXK Pyridoxal kinase 0 0 84.658 0.0063533 37095000 26040 37892 38270 24049 42572 39323 43916 59536 37673 31162 FALSE FALSE TRUE 31832.50816 42323.13978 52427.66555 25362.73597 38333.3822 41381.89148 34532.98784 44934.70265 45233.62554 23393.88689 1.360719076 1.809153818 2.241083997 1.084160836 1.638606802 1.76891902 1.476154347 1.920788232 1.933566053 1 14.51384396 KIHVVDSGLTFNLPYPLILRPQR ddPTM_HeLa_A486_30min_R1 1 KIHVVDSGLTFNLPYPLILRPQR 23 2 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 0 0 141.97 6.88E-13 14279000 15269 13885 11985 6667 19351 14536 17442 15362 13780 24591 FALSE FALSE TRUE 14198.72195 12784.70203 16625.91297 15521.11293 16923.81714 12742.69611 13077.82712 11864.40795 14974.4615 18433.25354 0.770277581 0.693567308 0.901952167 0.842017005 0.918113403 0.691288496 0.70946928 0.643641554 0.812361283 1 14.17002311 -6.281949143 24.87727994 0.74521205 0.823073288 0.030968603 0.109133103 1841.061222 2233105.397 0.03786873 0.033438396 5.22E-07 6.281949143 0.077861238 KIILNAVFGFINNPKPK ddPTM_HeLa_A485_30min_R1 2 KIILNAVFGFINNPKPK 17 2 A0A494BZT7;O14656-2;O14656 A0A494BZT7 TOR1A Torsin-1A 0 0 ; ; 202.13 1.34E-18 20755400 69598 52424 34908 71526 53568 42854 91627 81555 24565 114504 FALSE FALSE TRUE 85079.83499 58554.53077 47821.92184 75433.28427 48234.58183 45097.76918 72050.14293 61553.50838 29494.97018 85960.26009 0.989757766 0.681181405 0.556325932 0.877536715 0.561126523 0.524635094 0.838179676 0.716069359 0.343123324 1 16.39138223 -4.263965008 5.895063768 0.66712657 0.99865429 0.2057118 0.183180183 0.196225875 31.78963577 0.043320008 0.262442657 5.45E-05 4.263965008 0.331527721 KIIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK ddPTM_HeLa_A485_30min_R1 1 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 37 1 P61978;P61978-2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 KIIPTLEEGLQLPS(0.95)PT(0.044)AT(0.005)S(0.001)QLPLESDAVECLNYQHYK 117.58 1.91E-05 1942900000 13837 13703 12634 12935 16134 19476 23550 26832 11338 22639 TRUE FALSE FALSE 16914.99291 15305.44665 17307.84234 13641.6063 14527.64231 20495.73324 18518.35011 20251.40993 13613.4326 16995.51394 0.995262219 0.900558036 1.018377109 0.80265924 0.854792762 1.2059496 1.089602243 1.191573847 0.801001526 1 14.05286637 -6.243282549 24.99681667 1.07159737 0.913141246 0.258135769 0.120293376 1069.117277 1471873.053 0.039166565 0.039088881 5.71E-07 6.243282549 -0.158456123 KIIQQVLQGLDYLHTK ddPTM_HeLa_A486_30min_R1 2 KIIQQVLQGLDYLHTK 16 1 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4 H3BLV9 SRPK1 SRSF protein kinase 1 0 0 ; ; 169.92 5.41E-11 8337100 26621 24440 17904.7 9279.6 25367 24094 28763 26437 21996 28542 FALSE FALSE TRUE 24755.00537 22503.28539 24837.87934 21603.37777 22185.23432 21121.52725 21566.19318 20417.87222 23902.63099 21394.89742 1.157051837 1.051806183 1.160925376 1.009744396 1.036940439 0.987222646 1.008006383 0.954333728 1.117211759 1 14.38497914 -5.276474258 24.43179945 1.013620044 1.116115636 0.503462572 0.04851619 460.422882 748190.1798 0.012894141 0.019218681 5.29E-06 5.276474258 0.102495591 KIKNENT(ph)EGSPQEDGVELEGLK ddPTM_HeLa_A485_30min_R1 1 KIKNENTEGSPQEDGVELEGLK 22 2 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 KIKNENT(0.798)EGS(0.202)PQEDGVELEGLK 97.057 0.000911 136140000 79135 81239 52242 120930 113240 112330 199730 296540 87970 218990 TRUE FALSE FALSE 96738.30774 90739.19436 71568.48977 127536.0997 101965.428 118211.4251 157056.0539 223813.1 105624.7721 164399.8232 0.588433162 0.551942165 0.435331914 0.775767864 0.620228331 0.719048371 0.955329822 1.361395017 0.642487139 1 17.32684922 -6.678109083 2.733724046 1.027790727 0.596284281 0.518725628 0.179648202 0.205628365 3.118370387 0.076441646 0.05454725 2.10E-07 6.678109083 -0.431506447 KILALLDALSTVHSQK ddPTM_HeLa_A485_30min_R1 2 KILALLDALSTVHSQK 16 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 0 ; ; 208.43 5.77E-19 11974100 46180 70113 48304 34851 69621 67141 88498 135199 42962 58884 FALSE FALSE TRUE 56452.58168 78312.10545 66173.6597 36754.82188 62689.28879 70656.39894 69589.67934 102041.2333 51584.07933 44205.30248 1.277054528 1.771554566 1.496962038 0.83145731 1.418139573 1.598369313 1.57423828 2.308348265 1.166920628 1 15.43193181 -6.224790809 4.794627292 1.615328428 1.357529297 0.024156826 0.392119932 0.555455307 31.88636726 0.133773873 0.130237871 5.96E-07 6.224790809 -0.257799131 KILALLDALSTVHSQK ddPTM_HeLa_A486_30min_R1 2 KILALLDALSTVHSQK 16 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 0 ; ; 179.81 1.37E-13 8814600 29084 23169.6 17804.8 9313.2 29815.5 22964.2 30517.5 28097.7 21893 28770.4 FALSE FALSE TRUE 27045.36179 21333.55651 24699.29539 21681.60026 26075.76197 20131.11049 22881.69872 21700.46708 23790.70287 21566.10458 1.254068007 0.989216965 1.145283113 1.005355426 1.209108575 0.933460673 1.061002864 1.006230263 1.103152532 1 14.39647799 -6.265825362 24.9929211 1.023673264 1.108275096 0.245109148 0.086181964 620.2392248 3534338.849 0.027904476 0.025457108 5.42E-07 6.265825362 0.084601833 KILDPNTGEPAPVLSS(ph)PPPADVSTFLAFPS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 KILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 33 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 2 0 KILDPNTGEPAPVLS(0.48)S(0.508)PPPADVS(0.014)T(0.014)FLAFPS(0.984)PEK 67.829 0.0020241 117930000 67188 58930 29526 40040 59326 69544 96646 90889 43603 115290 TRUE FALSE FALSE 62478.46816 54260.17218 40959.25793 93215.14351 51884.77989 60964.36835 72464.14858 70195.55879 47382.54315 86420.63359 0.722957766 0.62786131 0.473952299 1.078621385 0.600374907 0.705437646 0.838505176 0.812254619 0.548278127 1 16.39908819 -11.66879218 2.223156442 9.698453463 0.716521683 0.220097934 0.162425922 9876197.295 418979.2809 436809097.6 0.039754371 2.14E-12 11.66879218 -8.98193178 KILDPNTGEPAPVLSS(ph)PPPADVSTFLAFPSPEK ddPTM_HeLa_A485_30min_R1 1 KILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 33 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 1 0 KILDPNTGEPAPVLS(0.021)S(0.366)PPPADVS(0.297)T(0.297)FLAFPS(0.018)PEK 67.809 0.0012276 104580000 85581 89578 57307 93177 103010 97724 128520 149010 78330 121320 TRUE FALSE FALSE 104618.1982 100053.3679 78507.24404 98267.02357 92753.96271 102840.6775 101060.6521 112465.0639 94050.11251 91077.15673 1.148676594 1.09855612 0.86198611 1.078942592 1.018410829 1.129159948 1.1096158 1.234832837 1.032642167 1 16.47480163 -6.263891021 24.44336494 1.116450058 1.036622308 0.084289646 0.091553011 322.6137477 3216505.14 0.031606899 0.02915547 5.45E-07 6.263891021 -0.07982775 KILDPNTGEPAPVLSSPPPADVSTFLAFPS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 KILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK 33 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 1 0 KILDPNTGEPAPVLSSPPPADVS(0.002)T(0.003)FLAFPS(0.995)PEK 90.376 0.00015857 151700000 143900 133720 80762 85712 150360 168910 187490 183660 101510 246210 TRUE FALSE FALSE 133813.3531 123123.5402 112035.2093 199541.8676 131500.4467 148071.6016 140578.0189 141844.6273 110308.9685 184557.4134 0.725050003 0.667128662 0.607048003 1.081191289 0.712517825 0.802306441 0.761703452 0.768566402 0.597694595 1 17.49371016 -11.39215678 2.354710707 3.079062945 0.752061242 0.257318014 0.128678399 4905764.198 889710.3678 54425785.91 0.032051398 4.05E-12 11.39215678 -2.327001702 KILDSVGIEADDDRLNK ddPTM_HeLa_A485_30min_R1 1 KILDSVGIEADDDRLNK 17 2 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 100.35 0.00034327 220350000 53606 52305 40153 71097 69484 80923 98968 103310 56421 93765 FALSE FALSE TRUE 65530.46976 58421.61476 55007.26561 74980.84908 62565.92899 85160.00315 77822.67831 77973.06052 67744.17718 70391.11112 0.93094808 0.829957275 0.781451873 1.065203374 0.888832808 1.20981189 1.105575364 1.107711745 0.962396759 1 16.10310564 -5.270816005 24.62883371 1.055438661 0.845702896 0.512852013 0.089612068 413.7568245 1086781.412 0.025735403 0.038762629 5.36E-06 5.270816005 -0.209735766 KIMSS(ph)PLSK ddPTM_HeLa_A486_30min_R1 1 KIMSSPLSK 9 1 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 1 0 KIMS(0.168)S(0.832)PLSK 64.121 0.013713 245900000 793180 657700 370830 442850 690980 736040 855440 870320 514850 967940 TRUE FALSE FALSE 737582.178 605581.4567 514425.3072 1030977.18 604310.8453 645234.8683 641399.8641 672167.135 559477.6125 725561.5238 1.016567381 0.834638328 0.709003014 1.420936952 0.832887116 0.889290359 0.884004792 0.926409564 0.771096033 1 19.46873843 KINLELR ddPTM_HeLa_A485_30min_R1 2 KINLELR 7 1 Q5TB25;Q5TB19;Q9BTT0-2;Q9BTT0;E9PI45;E9PPH5;E9PLC4 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 ; ; 100.15 0.010847 48534000 66178 91233 73362 67975 103278 94594 107725 125591 79876 103293 FALSE FALSE TRUE 80899.06779 101901.9057 100501.6566 71688.30213 92995.27969 99546.79557 84708.67372 94789.61033 95906.38053 77543.95607 1.043267224 1.314117965 1.296060476 0.924486005 1.199258903 1.283746672 1.092395565 1.222398432 1.236800202 1 16.24272672 -11.39062301 1.897434148 4.78E-05 1.181472329 0.171527959 0.118031849 1609658.331 177255.1096 6876398.472 0.030468268 4.07E-12 11.39062301 1.181424575 KINLELR ddPTM_HeLa_A486_30min_R1 1 KINLELR 7 1 Q5TB25;Q5TB19;Q9BTT0-2;Q9BTT0;E9PI45;E9PPH5;E9PLC4 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 89.752 0.022302 16439000 37948 40961 34522 12493 46828 37113 41870 46664 35680 46011 FALSE FALSE TRUE 35288.04116 37715.10118 47889.84293 29084.33536 40954.39559 32534.3754 31393.68314 36039.62587 38772.77113 34489.54612 1.023151799 1.093522688 1.38853213 0.843279736 1.187443739 0.943311208 0.910237642 1.044943466 1.12418908 1 15.07387152 -5.276262793 24.99883964 1.010256292 1.160914287 0.248633297 0.127820602 1169.268226 1971901.107 0.035719127 0.053228631 5.29E-06 5.276262793 0.150657995 KINRLS(ph)TPIAGLDNINVFLK ddPTM_HeLa_A486_30min_R1 1 KINRLSTPIAGLDNINVFLK 20 2 Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 KINRLS(0.5)T(0.5)PIAGLDNINVFLK 102.48 5.21E-05 73655000 165670 172800 115770 86977 221190 170740 221780 232380 122340 198040 TRUE FALSE FALSE 154057.3885 159106.6987 160599.2444 202486.8516 193446.2877 149675.8348 166288.2983 179472.1468 132944.5297 148449.495 1.037776441 1.071790097 1.08184433 1.364011724 1.303111794 1.00826099 1.12016749 1.20897782 0.895553937 1 17.17961266 -7.762382443 24.99999974 0.947776912 1.151233622 0.346874313 0.110695704 30.113685 798088.6194 0.095739539 0.030191145 1.73E-08 7.762382443 0.20345671 KINS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNERLSK ddPTM_HeLa_A485_30min_R1 2 KINSSPNVNTTASGVEDLNIIQVTIPDDDNERLSK 35 2 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 KINS(0.5)S(0.5)PNVNTTASGVEDLNIIQVTIPDDDNERLSK;KINS(0.5)S(0.5)PNVNTTASGVEDLNIIQVTIPDDDNERLSK ; 219.35 1.21E-39 89997000 22612 30459 23636 27660 37404 49546 69808 162270 26689 33046 TRUE FALSE FALSE 27641.96139 34020.91509 32379.93998 29170.99576 33679.92643 52140.15195 54892.95052 122473.0281 32045.23749 24808.24037 1.114224991 1.371355428 1.305209055 1.175859123 1.357610452 2.101727135 2.212690207 4.936788191 1.291717471 1 14.59853179 -6.483076538 2.183233602 2.687355975 1.257503777 0.192687274 1.003815669 0.402173707 3.821867173 0.413626342 0.328288923 3.29E-07 6.483076538 -1.429852198 KIPDPDS(ph)DDVSEVDAR ddPTM_HeLa_A485_30min_R1 2 KIPDPDSDDVSEVDAR 16 1 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;A0A2R8Y7R0;A0A2R8YGP5;A0A2R8Y583 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KIPDPDS(1)DDVSEVDAR;KIPDPDS(1)DDVSEVDAR ; 141.1 3.24E-07 593220000 602860 608420 483680 683990 689680 594690 701110 775770 577510 1016720 TRUE FALSE FALSE 736964.1272 679569.4264 662613.3596 721354.6417 621013.0376 625827.0488 551312.121 585511.1911 693410.9598 763270.4153 0.965534773 0.890339011 0.868123992 0.94508398 0.813621261 0.819928346 0.722302489 0.767108458 0.908473518 1 19.54183475 -5.771895964 24.90558674 0.820182059 0.911836304 0.177487807 0.076767206 283.6063468 675494.1443 0.023257235 0.026655723 1.69E-06 5.771895964 0.091654245 KIPDPDS(ph)DDVSEVDAR ddPTM_HeLa_A486_30min_R1 2 KIPDPDSDDVSEVDAR 16 1 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;A0A2R8Y7R0;A0A2R8YGP5;A0A2R8Y583 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KIPDPDS(1)DDVSEVDAR;KIPDPDS(1)DDVSEVDAR ; 142.99 5.26E-08 306430000 652740 637790 395330 200160 578110 608960 692540 666630 518690 674820 TRUE FALSE FALSE 606986.2968 587249.1976 548412.3633 465982.5955 505598.0531 533832.7067 519259.1671 514852.9014 563650.4668 505840.6797 1.199955482 1.160937072 1.084160261 0.921204273 0.99952035 1.055337635 1.026527102 1.017816325 1.114284575 1 18.94832354 -4.848516693 3.152595646 1.020061453 1.186304814 0.651698367 0.04673505 0.148647772 2.913590059 0.013028423 0.033371414 1.42E-05 4.848516693 0.166243361 KIPEFEVENS(ph)PLSDVAK ddPTM_HeLa_A485_30min_R1 3 KIPEFEVENSPLSDVAK 17 1 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9;Q7Z4H7-2 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 KIPEFEVENS(0.979)PLS(0.021)DVAK;KIPEFEVENS(1)PLSDVAK;KIPEFEVENS(1)PLSDVAK ;; 200.17 2.98E-25 717010000 846359 673844.3 494701.8 1073950.7 1075662 898511.5 1301215.9 1375124 731082.5 1462588 TRUE FALSE FALSE 1034628.64 752644.5292 677712.5821 1132617.907 968565.3144 945556.1728 1023200.493 1037872.683 877804.0519 1097991.729 0.942291834 0.68547377 0.617229224 1.03153592 0.882124418 0.861168758 0.931883608 0.945246358 0.799463265 1 20.06643576 -5.263221058 24.99963111 0.915612086 0.742045828 0.389776358 0.099074076 160.5385414 2252608.608 0.027249172 0.04287936 5.45E-06 5.263221058 -0.173566258 KIPEFEVENS(ph)PLSDVAK ddPTM_HeLa_A486_30min_R1 2 KIPEFEVENSPLSDVAK 17 1 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9;Q7Z4H7-2 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 KIPEFEVENS(1)PLSDVAK;KIPEFEVENS(1)PLSDVAK ; 154.95 1.47E-08 677250000 740770 764670 366330 383240 692810 838570 1023040 956590 545010 1077740 TRUE FALSE FALSE 688845.8483 704074.7643 508182.7867 892202.0879 605911.3096 735115.7594 767064.5714 738795.3392 592251.9056 807866.8891 0.852672461 0.871523235 0.629042722 1.104392444 0.750013793 0.909946638 0.949493762 0.914501323 0.733105804 1 19.62375808 -5.24783375 24.99850491 0.900346545 0.793123884 0.183330166 0.118936141 1557.466898 2861630.037 0.031070729 0.053422507 5.65E-06 5.24783375 -0.10722266 KIPEPS(ph)PVTR ddPTM_HeLa_A485_30min_R1 3 KIPEPSPVTR 10 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 KIPEPS(1)PVTR;KIPEPS(1)PVTR;KIPEPS(1)PVTR ;; 143.93 3.41E-06 7069310000 4100010 4565800 3886400 4380450 4965720 4667940 5821200 5607540 4116480 5355450 TRUE FALSE FALSE 5012043.08 5099730.593 5324141.087 4619742.892 4471315.481 4912346.12 4577453.065 4232282.023 4942619.777 4020434.875 1.246642026 1.268452481 1.324269949 1.149065471 1.112147223 1.22184447 1.138546751 1.052692595 1.229374416 1 21.93892013 -1 0.074340383 0.835296446 2.019329045 0.543437974 0.065101823 170.3106852 0.93193112 2.432725242 20.90665052 0.1 1 1.184032599 KIPEPS(ph)PVTR ddPTM_HeLa_A486_30min_R1 5 KIPEPSPVTR 10 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 KIPEPS(1)PVTR;KIPEPS(0.999)PVT(0.001)R;KIPEPS(0.994)PVT(0.006)R;KIPEPS(1)PVTR;KIPEPS(0.999)PVT(0.001)R ;;;; 127.32 5.91E-05 11297130000 3808500 3701210 2762010 1141113 3958310 3404190 3726740 3643580 3165950 3749710 TRUE FALSE FALSE 3541543.817 3407912.64 3831534.241 2656568.733 3461821.85 2984215.649 2794270.235 2814016.373 3440377.095 2810758.209 1.259995899 1.212453148 1.3631675 0.945143102 1.231632745 1.061711975 0.994133976 1.001159176 1.224003219 1 21.42252792 -5.255754499 24.99889428 1.069249602 1.271930279 0.506147408 0.096361087 397.977995 1750077.13 0.025797905 0.04315144 5.55E-06 5.255754499 0.202680677 KIPEPS(ph)PVTRR ddPTM_HeLa_A485_30min_R1 4 KIPEPSPVTRR 11 2 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 KIPEPS(1)PVTRR;KIPEPS(1)PVTRR;KIPEPS(0.999)PVT(0.001)RR;KIPEPS(0.999)PVT(0.001)RR ;;; 108.38 0.00027898 1794930000 935040 1626560 1155240 727480 1637000 1759910 1902650 2754020 1147190 1078510 TRUE FALSE FALSE 1143036.422 1816772.043 1582611.35 767220.3903 1474014.532 1852056.166 1496133.284 2078592.277 1377420.51 809657.3055 1.411753361 2.243877787 1.954668153 0.947586572 1.820541261 2.287456871 1.847859921 2.567249456 1.701238908 1 19.62695188 -6.000997566 24.99842869 1.985251313 1.665020791 0.028832854 0.499813655 102.5139327 2569056.618 0.153195227 0.171577536 9.98E-07 6.000997566 -0.320230523 KIPEPS(ph)PVTRR ddPTM_HeLa_A486_30min_R1 4 KIPEPSPVTRR 11 2 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 KIPEPS(1)PVTRR;KIPEPS(1)PVTRR;KIPEPS(1)PVTRR;KIPEPS(1)PVTRR ;;; 150.37 2.85E-07 1350700000 2298750 1847460 1509910 836735 2553150 1527740 2150670 2321920 1321220 2409090 TRUE FALSE FALSE 2137619.496 1701060.541 2094587.589 1947961.366 2232910.12 1339262.972 1612549.619 1793269.503 1435744.413 1805838.183 1.183727045 0.941978388 1.159897718 1.078702059 1.23649513 0.741629557 0.892964626 0.993039974 0.795057069 1 20.78423719 -6.25886658 24.99999935 0.884629893 1.110165509 0.56442136 0.103308044 179.4343518 1743576.806 0.033947243 0.032456727 5.51E-07 6.25886658 0.225535615 KIPKS(ph)PLRNPLQAK ddPTM_HeLa_A485_30min_R1 1 KIPKSPLRNPLQAK 14 3 F5H212;P15822;C9JZF8;C9JAW2;C9J2N3 F5H212 HIVEP1 Zinc finger protein 40 1 0 KIPKS(1)PLRNPLQAK 104.44 0.0022342 224850000 85840 65880 46490 93732 81107 125430 173560 193990 75612 157590 TRUE FALSE FALSE 104934.8119 73584.09292 63688.58561 98852.34182 73031.7023 131997.3208 136477.4881 146413.6483 90786.63485 118305.7132 0.886980087 0.621982581 0.538339053 0.835566932 0.617313402 1.115730739 1.153600147 1.237587301 0.767390115 1 16.85216022 -6.264827225 24.99179707 1.075882036 0.694246369 0.578855695 0.150753974 203.0155712 1497619.462 0.051258944 0.047043969 5.43E-07 6.264827225 -0.381635667 KIPLKPS(ph)PSK ddPTM_HeLa_A485_30min_R1 1 KIPLKPSPSK 10 2 A6PW57;Q99755-4;Q99755-3;Q99755;A2A3N6 A6PW57 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein 1 0 KIPLKPS(0.657)PS(0.343)K 61.038 0.012502 464100000 398750 567280 393610 475930 653410 617200 655910 946160 499360 793450 TRUE FALSE FALSE 487450.5618 633618.4613 539222.7185 501928.8508 588354.2061 649515.6376 515769.4702 714112.7765 599576.9716 595657.5174 0.818340317 1.06372948 0.905256297 0.842646716 0.987739077 1.090417931 0.865882584 1.198864709 1.006580047 1 19.18412354 -5.992699931 23.20666187 1.034896682 0.918080567 0.259924773 0.098777502 107.9991909 343317.5801 0.029895289 0.033806972 1.02E-06 5.992699931 -0.116816114 KIPLKPS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 KIPLKPSPSK 10 2 A6PW57;Q99755-4;Q99755-3;Q99755;A2A3N6 A6PW57 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein 1 0 KIPLKPS(0.714)PS(0.286)K 85.457 0.0018645 762040000 503560 505940 235750 325220 526020 739220 890130 766330 438720 998730 TRUE FALSE FALSE 468263.0444 465847.4718 327038.7136 757128.5957 460041.6667 648022.5522 667410.0592 591853.3879 476748.6028 748641.5074 0.625483679 0.622257071 0.436842882 1.011336652 0.614501951 0.865597948 0.891494865 0.790569828 0.636818288 1 19.51391551 -5.252265784 24.99854033 0.816380135 0.567600802 0.45886623 0.132999159 623.2067903 1698268.409 0.034899329 0.059369186 5.59E-06 5.252265784 -0.248779333 KIPLKPS(ph)PSKK ddPTM_HeLa_A486_30min_R1 1 KIPLKPSPSKK 11 3 A6PW57;Q99755-4;Q99755-3;Q99755;A2A3N6 A6PW57 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein 1 0 KIPLKPS(0.966)PS(0.034)KK 113.65 0.00041018 1123700000 1396900 1359400 399260 1000600 1070200 2119700 2684900 2469900 963610 3311000 TRUE FALSE FALSE 1298984.524 1251676.193 553864.1646 2329447.368 935965.5368 1858192.966 2013109.622 1907557.688 1047136.491 2481904.049 0.523382249 0.504320944 0.22316099 0.938572693 0.377115923 0.748696537 0.811115008 0.768586396 0.421908531 1 21.24301591 -5.591615629 0.9902901 0.728762885 0.443145901 0.213529668 0.216887788 0.947851925 1.93308224 0.092460893 0.178010938 2.56E-06 5.591615629 -0.285616985 KIPLKPSPS(ph)K ddPTM_HeLa_A486_30min_R1 1 KIPLKPSPSK 10 2 A6PW57;Q99755-4;Q99755-3;Q99755;A2A3N6 A6PW57 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein 1 0 KIPLKPS(0.273)PS(0.727)K 90.731 0.0014023 701360000 1223200 1127600 528510 679120 992640 1453700 1810000 1665400 954400 2073100 TRUE FALSE FALSE 1137459.997 1038244.869 733163.226 1581025.681 868133.8352 1274357.274 1357118.856 1286224.775 1037128.16 1553982.266 0.731964593 0.668118866 0.471796392 1.017402653 0.558651057 0.820059084 0.873316823 0.827695916 0.667400255 1 20.56753861 -13.99999998 0.06966479 1.879813142 0.421250623 0.245350483 0.146952463 440.0176917 2.203587241 62.59719132 7.858761912 1.00E-14 13.99999998 -1.458562519 KIPLKPSPS(ph)KK ddPTM_HeLa_A485_30min_R1 2 KIPLKPSPSKK 11 3 A6PW57;Q99755-4;Q99755-3;Q99755;A2A3N6 A6PW57 PIP5K1A;PIPSL Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha;Putative PIP5K1A and PSMD4-like protein 1 0 KIPLKPS(0.384)PS(0.616)KK;KIPLKPS(0.402)PS(0.598)KK ; 93.494 0.013354 5329700000 4810920 2509020 1146320 7125200 3562620 4918060 7922600 8307800 3214140 10843000 TRUE FALSE FALSE 5881092.557 2802428.063 1570391.47 7514431.634 3207913.044 5175562.017 6229871.788 6270299.024 3859188.416 8140039.651 0.722489424 0.344276955 0.192921845 0.923144353 0.394090592 0.635815332 0.765336787 0.770303253 0.474099462 1 22.95660439 -14 0.093896521 2.384142883 0.251661476 0.278436691 0.211759092 254.6720125 1.645406396 69.55087594 4.356481904 1.00E-14 14 -2.132481407 KIQLLCLMEMTFTRPANHR ddPTM_HeLa_A486_30min_R1 2 KIQLLCLMEMTFTRPANHR 19 2 E9PL38;A0A087WUL9;Q9UNM6;Q9UNM6-2 E9PL38 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 ; ; 92.307 0.00048221 13790300 27853 25775 23691 16038.4 36737 28734 39154 35804 25917.2 40530 FALSE FALSE TRUE 25900.64853 23732.49513 32864.78967 37338.20574 32129.1029 25189.09123 29357.25507 27652.2108 28163.72376 30381.02419 0.852527169 0.781161786 1.081753843 1.228997597 1.057538505 0.829106059 0.96630235 0.910180336 0.92701693 1 14.89088289 -9.453484068 14.02401832 0.999990922 0.963493947 0.008203415 0.126933651 0 0 0.136324118 0.033063455 3.52E-10 9.453484068 -0.036496975 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEK ddPTM_HeLa_A485_30min_R1 3 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.927)ENS(0.069)YS(0.004)LDDLEIGPGQLSSSTFDSEK;KIS(0.545)ENS(0.192)Y(0.001)S(0.262)LDDLEIGPGQLSSSTFDSEK;KIS(0.763)ENS(0.17)YS(0.067)LDDLEIGPGQLSSSTFDSEK ;; 195.19 2.02E-21 2075820000 376500 261856 144219 426718 260410 249518 366301 303634 198563 481721 TRUE FALSE FALSE 460251.1261 292477.7814 197571.6096 450028.5238 234482.666 262582.3767 288037.7989 229167.2854 238412.7728 361636.8201 1.272688787 0.808761069 0.546326034 1.244421195 0.648392677 0.726094142 0.796483607 0.633694559 0.659260229 1 18.46418205 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEK ddPTM_HeLa_A486_30min_R1 1 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.783)ENS(0.128)YS(0.088)LDDLEIGPGQLSSSTFDSEK 256.66 2.88E-63 219780000 286630 265620 105530 151770 190780 325230 374490 306270 193010 402640 TRUE FALSE FALSE 266538.7172 244571.3038 146394.0422 353328.23 166850.5934 285106.4293 280788.641 236539.0068 209740.2622 301816.3233 0.883115646 0.810331599 0.485043488 1.170673031 0.552821636 0.944635553 0.93032954 0.783718403 0.694926835 1 18.20331131 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEKNESR ddPTM_HeLa_A485_30min_R1 2 KISENSYSLDDLEIGPGQLSSSTFDSEKNESR 32 2 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.415)ENS(0.415)Y(0.004)S(0.166)LDDLEIGPGQLSSSTFDSEKNESR;KIS(0.974)ENS(0.023)YS(0.003)LDDLEIGPGQLSSSTFDSEKNESR ; 148.78 6.55E-10 2419350000 100703 91115 71445 188660 144474 102506 201558 175478 113122 232311 TRUE FALSE FALSE 123104.0349 101770.1067 97875.47857 198966.0181 130089.6613 107873.0557 158493.4867 132441.7454 135824.5478 174400.1431 0.705871181 0.583543711 0.561212146 1.14085926 0.745926345 0.618537656 0.908792183 0.759413055 0.778809842 1 17.4120417 -7.576537159 0.044412368 1.648469573 5.88E-14 0.215171377 0.157187849 86.20968294 3.744617229 69.43837613 67.40259253 2.65E-08 7.576537159 -1.648469573 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEKNESR ddPTM_HeLa_A486_30min_R1 3 KISENSYSLDDLEIGPGQLSSSTFDSEKNESR 32 2 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.731)ENS(0.25)YS(0.019)LDDLEIGPGQLSSSTFDSEKNESR;KIS(0.993)ENS(0.007)YSLDDLEIGPGQLSSSTFDSEKNESR;KIS(0.999)ENS(0.001)YSLDDLEIGPGQLSSSTFDSEKNESR ;; 219.4 3.06E-39 5841340000 378260 391730 217930 333250 417350 537980 670570 605680 277920 571330 TRUE FALSE FALSE 351745.9273 360687.8881 302318.3324 775822.8415 365002.0714 471609.4974 502786.2934 467779.8859 302010.3294 428265.2493 0.821327268 0.84220676 0.70591376 1.8115475 0.852280385 1.101208884 1.17400675 1.092266736 0.705194572 1 18.70814509 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEKNESRR ddPTM_HeLa_A485_30min_R1 2 KISENSYSLDDLEIGPGQLSSSTFDSEKNESRR 33 3 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.971)ENS(0.028)YS(0.001)LDDLEIGPGQLSSSTFDSEKNESRR;KIS(0.79)ENS(0.209)YS(0.001)LDDLEIGPGQLSSSTFDSEKNESRR ; 211.59 6.54E-29 1568150000 291323 316020 188457 242489 464500 396730 684950 962200 228457 357170 TRUE FALSE FALSE 356126.7963 352975.79 258175.0867 255735.5601 418252.749 417502.1693 538604.837 726218.9413 274306.2244 268134.0922 1.328166789 1.316415183 0.962858115 0.953759956 1.559864117 1.557064847 2.008714492 2.708417029 1.023018826 1 18.03259514 -6.078662164 2.292285134 1.800297567 1.145762088 0.176896981 0.481757831 0.418011798 4.343489984 0.173794528 0.180501876 8.34E-07 6.078662164 -0.654535479 KIS(ph)ENSYSLDDLEIGPGQLSSSTFDSEKNESRR ddPTM_HeLa_A486_30min_R1 1 KISENSYSLDDLEIGPGQLSSSTFDSEKNESRR 33 3 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.921)ENS(0.079)YS(0.001)LDDLEIGPGQLSSSTFDSEKNESRR 160.59 3.42E-14 390270000 99302 65713 48121 76795 107540 78090 146310 152680 42586 136820 TRUE FALSE FALSE 92341.4426 60505.66256 66754.73993 178782.641 94051.33043 68456.04976 109701.6905 117918.097 46277.38877 102559.3815 0.90037051 0.589957366 0.650888675 1.743210991 0.917042684 0.66747721 1.069640719 1.14975437 0.451225311 1 16.64609994 KIS(ph)GTTALQEALK ddPTM_HeLa_A486_30min_R1 1 KISGTTALQEALK 13 1 Q9UDT6;Q9UDT6-2;J3KP58;P30622-2;P30622-1;P30622;F5H0N7 Q9UDT6;J3KP58 CLIP2;CLIP1 CAP-Gly domain-containing linker protein 2;CAP-Gly domain-containing linker protein 1 1 0 KIS(0.688)GT(0.145)T(0.167)ALQEALK 170.16 2.65E-12 115340000 155570 154860 72370 72181 114710 176370 212380 206680 121490 226840 TRUE FALSE FALSE 144665.3464 142588.3296 100393.6021 168041.0158 100322.0022 154611.2626 159240.2777 159623.4758 132020.851 170037.7875 0.850783514 0.838568483 0.590419363 0.988256894 0.58999828 0.909275902 0.936499351 0.938752957 0.776420659 1 17.37549587 -6.435548954 24.99990009 0.909991219 0.774529545 0.24627497 0.122888568 110.2093089 31547.05034 0.040941655 0.036107134 3.67E-07 6.435548954 -0.135461674 KIS(ph)LPIEDYFNK ddPTM_HeLa_A486_30min_R1 1 KISLPIEDYFNK 12 1 Q9UBD5;Q9UBD5-2 Q9UBD5 ORC3 Origin recognition complex subunit 3 1 0 KIS(1)LPIEDYFNK 70.529 0.0070239 73563000 74440 76776 44665 46190 94875 86422 102660 95009 67598 107420 TRUE FALSE FALSE 69222.14041 70691.99015 61960.48417 107532.6543 82974.89283 75760.13231 76973.38217 73377.52473 73457.44907 80521.33281 0.859674548 0.877928714 0.769491537 1.335455469 1.030470931 0.940870322 0.955937756 0.911280553 0.912273139 1 16.29708343 KIS(ph)PPSYAR ddPTM_HeLa_A485_30min_R1 5 KISPPSYAR 9 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 KIS(0.96)PPS(0.04)YAR;KIS(0.488)PPS(0.488)Y(0.024)AR;KIS(0.824)PPS(0.176)YAR;KIS(0.751)PPS(0.249)YAR;KIS(0.969)PPS(0.031)YAR ;;;; 98.902 0.0012386 8192400000 640350 771580 674967 694600 915610 760690 1016180 1105460 693220 977760 TRUE FALSE FALSE 782793.6483 861809.5691 924665.381 732544.2392 824448.6535 800518.5521 799064.8416 834344.2017 832342.8954 734022.4263 1.066443776 1.174091606 1.25972361 0.997986183 1.123192731 1.090591409 1.088610937 1.136673992 1.1339475 1 19.48546462 -14 0.265642443 0.211035885 1.128892337 0.224054919 0.065493557 323.1482903 3.160567275 139.7809459 0.085757591 1.00E-14 14 0.917856452 KIS(ph)PPSYAR ddPTM_HeLa_A486_30min_R1 6 KISPPSYAR 9 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 KIS(0.755)PPS(0.245)YAR;KIS(0.889)PPS(0.111)YAR;KIS(0.948)PPS(0.052)YAR;KIS(0.804)PPS(0.196)YAR;KIS(0.963)PPS(0.037)YAR;KIS(0.826)PPS(0.174)YAR ;;;;; 130.15 0.00014351 9236410000 2001789 2054885 1527629 702734 2186384 1946746 2210850 2280074 1607034 2243800 TRUE FALSE FALSE 1861473.928 1892048.429 2119167.86 1636000.266 1912147.331 1706576.272 1657671.946 1760950.924 1746333.001 1681937.875 1.10674357 1.124921709 1.259956085 0.97268769 1.136871557 1.014648815 0.985572636 1.046977388 1.038286269 1 20.68169299 -5.272865273 24.99842955 1.032050145 1.159978585 0.544770317 0.056852249 569.4292008 1245838.879 0.015902246 0.023814363 5.34E-06 5.272865273 0.12792844 KIS(ph)PVKFSNTDSVLPPK ddPTM_HeLa_A485_30min_R1 1 KISPVKFSNTDSVLPPK 17 2 G3V3Q0;G3V5F9;G3V5B8;G3V554;G3V4W8;G3V5H9;G3V2U6;Q9BRS7;G3V2F4;E7EPD8;Q9NUW8 G3V3Q0 TDP1 Tyrosyl-DNA phosphodiesterase 1 1 0 KIS(0.895)PVKFS(0.043)NT(0.043)DS(0.02)VLPPK 50.883 0.02051 99519000 196580 192890 152530 277580 252110 248140 346510 325250 204880 401980 TRUE FALSE FALSE 240308.5428 215446.8076 208957.1943 292743.4925 227009.0432 261132.2267 272475.3078 245481.9275 245997.5367 301773.7839 0.796320143 0.713934805 0.692429911 0.970075958 0.752249053 0.865324427 0.902912454 0.813463398 0.815171993 1 18.20310795 -13.73750265 0.026909015 2.130759969 2.97E-06 0.395599724 0.075817329 1813.942385 3.829506003 222.6004282 102.0716527 1.83E-14 13.73750265 -2.130756995 KIS(ph)PVKFSNTDSVLPPK ddPTM_HeLa_A486_30min_R1 1 KISPVKFSNTDSVLPPK 17 2 G3V3Q0;G3V5F9;G3V5B8;G3V554;G3V4W8;G3V5H9;G3V2U6;Q9BRS7;G3V2F4;E7EPD8;Q9NUW8 G3V3Q0 TDP1 Tyrosyl-DNA phosphodiesterase 1 1 0 KIS(0.963)PVKFS(0.016)NT(0.021)DSVLPPK 79.635 0.0016932 197400000 268620 222160 96537 147040 238610 304200 382950 368620 182340 474410 TRUE FALSE FALSE 249791.1252 204555.2325 133918.7118 342316.551 208681.3089 266670.8969 287131.8596 284693.2729 198145.378 355614.6481 0.702420799 0.575215992 0.376583789 0.962605317 0.586818653 0.749887268 0.807424163 0.800566778 0.557191272 1 18.43995523 -14 0.09596276 1.95715112 0.461156794 0.27943164 0.155384576 257.6276262 1.693803826 50.45231906 2.980243972 1.00E-14 14 -1.495994326 KIS(ph)PVKFSNTDSVLPPKR ddPTM_HeLa_A485_30min_R1 2 KISPVKFSNTDSVLPPKR 18 3 G3V3Q0;G3V5F9;G3V5B8;G3V554;G3V4W8;G3V5H9;G3V2U6;Q9BRS7;G3V2F4;E7EPD8;Q9NUW8 G3V3Q0 TDP1 Tyrosyl-DNA phosphodiesterase 1 1 0 KIS(0.998)PVKFS(0.002)NTDSVLPPKR;KIS(0.999)PVKFS(0.001)NTDSVLPPKR ; 115.06 0.00041878 3525400000 1254210 1147790 617300 1702400 1490320 1837310 2983120 3323800 1039440 2576370 TRUE FALSE FALSE 1533204.688 1282014.056 845664.958 1795397.801 1341938.508 1933508.711 2345752.042 2508632.838 1248046.074 1934128.374 0.792710923 0.662838141 0.437233107 0.928272304 0.693820806 0.999679616 1.212821276 1.297035333 0.645275717 1 20.88325212 -6.311628449 3.732442944 1.068795903 0.695634243 0.405183339 0.197327326 0.22700846 6.55889488 0.072001354 0.064606886 4.88E-07 6.311628449 -0.37316166 KIS(ph)PVKFSNTDSVLPPKR ddPTM_HeLa_A486_30min_R1 2 KISPVKFSNTDSVLPPKR 18 3 G3V3Q0;G3V5F9;G3V5B8;G3V554;G3V4W8;G3V5H9;G3V2U6;Q9BRS7;G3V2F4;E7EPD8;Q9NUW8 G3V3Q0 TDP1 Tyrosyl-DNA phosphodiesterase 1 1 0 KIS(0.988)PVKFS(0.009)NT(0.003)DSVLPPKR;KIS(1)PVKFSNTDSVLPPKR ; 151.84 2.64E-08 2255120000 1991660 1524550 624290 1019560 1509410 1868100 2697700 2552300 1151950 3158800 TRUE FALSE FALSE 1852054.919 1403739.106 866031.8071 2373587.206 1320085.723 1637632.815 2022706.927 1971197.006 1251801.954 2367815.92 0.782178591 0.592841316 0.365751324 1.002437388 0.557511972 0.691621676 0.854250075 0.832495884 0.528673679 1 21.1751255 -13.99999999 0.156246726 2.097195319 0.606407706 0.204980191 0.177922579 211.0345006 1.916694614 72.16198186 0.800254985 1.00E-14 13.99999999 -1.490787613 KIS(ph)VVSATK ddPTM_HeLa_A486_30min_R1 1 KISVVSATK 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KIS(0.893)VVS(0.107)ATK 101.53 0.00098615 420400000 687540 674910 301920 329130 674580 1004600 1113900 1278700 503450 1179500 TRUE FALSE FALSE 639346.9965 621427.6736 418831.5097 766231.2733 589967.8862 880662.666 835190.4384 987567.9238 547089.4514 884145.5227 0.723124169 0.702856778 0.473713319 0.866634794 0.667274641 0.996060765 0.94463006 1.11697441 0.618777608 1 19.75392432 -6.256741595 24.83845923 0.943183316 0.685778656 0.41070552 0.148720567 358.8496524 1897337.136 0.048301726 0.046806408 5.54E-07 6.256741595 -0.25740466 KISENS(ph)YSLDDLEIGPGQLSSSTFDSEK ddPTM_HeLa_A486_30min_R1 1 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.351)ENS(0.543)Y(0.03)S(0.076)LDDLEIGPGQLSSSTFDSEK 203.52 1.44E-28 43224000 182760 174550 72673 99181 122780 225280 269490 211280 127850 274740 TRUE FALSE FALSE 169949.4678 160718.0223 100813.9319 230898.3803 107379.7875 197487.2441 202060.7516 163176.1562 138932.1409 205943.3157 0.82522449 0.780399314 0.489522719 1.121174433 0.521404577 0.95893981 0.981147414 0.792335287 0.6746135 1 17.65188778 KISSDLDGHPVPK ddPTM_HeLa_A485_30min_R1 2 KISSDLDGHPVPK 13 1 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 0 ; ; 87.18 0.0048333 20149400 95516 103770 98564 95772 153711 110514 149353 155611 114818 160974 FALSE FALSE TRUE 116763.2047 115904.9988 135026.9252 101003.7819 138406.9931 116300.3422 117442.5114 117447.1583 137860.9194 120846.1443 0.966213737 0.959112097 1.117345745 0.835804753 1.145315756 0.962383557 0.97183499 0.971873442 1.140797004 1 16.88281192 -7.735194233 24.97528855 1.070398694 0.992714961 0.115071209 0.087735038 398.6636383 379376.2428 0.055145039 0.02082917 1.84E-08 7.735194233 -0.077683733 KISSDLDGHPVPK ddPTM_HeLa_A486_30min_R1 2 KISSDLDGHPVPK 13 1 P29401;P29401-2;E9PFF2;F8W888 P29401 TKT Transketolase 0 0 ; ; 73.624 0.014813 7061600 42010 41852 33580 12731.4 53212 40329 45205 46689 35821 38296 FALSE FALSE TRUE 39065.31594 38535.4951 46583.0753 29639.34261 46537.65478 35353.61802 33894.23087 36058.93391 38925.99312 28706.43233 1.360855835 1.342399315 1.622739975 1.032498301 1.621157733 1.23155736 1.180719028 1.25612732 1.356002469 1 14.80908642 -13.57765689 0.125485971 7.81E-10 1.488866609 0.286486539 0.168587155 166.5364194 1.476512392 42.7202995 1.40261177 2.64E-14 13.57765689 1.488866608 KISSIQSIVPALEIANAHR ddPTM_HeLa_A485_30min_R1 4 KISSIQSIVPALEIANAHR 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 201.37 2.18E-25 323828000 345940 507999 401813 281428 416747 567156 566435 728105 360433 461748 FALSE FALSE TRUE 422893.1595 567405.064 550460.3495 296801.699 375254.2054 596851.4112 445411.5349 549536.1071 432768.597 346642.7214 1.219968381 1.636858439 1.587976079 0.856217889 1.082538828 1.721805693 1.28492972 1.585309811 1.248457187 1 18.40308994 -8.012797291 23.4799461 0.99999997 1.372840894 0.162479027 0.257911008 566.9210659 1040167.062 0.258413815 0.06672216 9.71E-09 8.012797291 0.372840924 KISSIQSIVPALEIANAHR ddPTM_HeLa_A486_30min_R1 3 KISSIQSIVPALEIANAHR 19 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ;; ;; 200.26 2.35E-25 296193000 159763.7 182795 157077.7 60132.4 270079 168668 188757 194167 160649.9 202871 FALSE FALSE TRUE 148565.0897 168309.6585 217902.3921 139991.2661 236203.1734 147859.4571 141528.0021 149959.4127 174575.1627 152070.7811 0.976946975 1.106784993 1.432901117 0.920566496 1.553244954 0.972306816 0.930671896 0.986115884 1.14798623 1 17.21438345 KIT(ph)PPS(ph)SPHSLTSTLVSLGHEEALEMAGSK ddPTM_HeLa_A486_30min_R1 1 KITPPSSPHSLTSTLVSLGHEEALEMAGSK 30 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 2 0 KIT(0.276)PPS(0.276)S(0.276)PHS(0.276)LT(0.276)S(0.276)T(0.276)LVS(0.071)LGHEEALEMAGSK 48.422 0.025449 71851000 138120 120810 58974 23350 124180 131440 154260 134850 98921 118230 TRUE FALSE FALSE 128438.5013 111236.5756 81810.31218 54359.98004 108604.1865 115224.2692 115662.5164 104147.5988 107495.5519 88624.43845 1.44924474 1.255145619 0.923112333 0.613374606 1.225442873 1.300141036 1.305086028 1.175156656 1.212933518 1 16.43541696 KIT(ph)PPSS(ph)PHSLTSTLVSLGHEEALEMAGSK ddPTM_HeLa_A485_30min_R1 1 KITPPSSPHSLTSTLVSLGHEEALEMAGSK 30 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 2 0 KIT(0.862)PPS(0.525)S(0.586)PHS(0.009)LT(0.006)S(0.006)T(0.005)LVS(0.001)LGHEEALEMAGSK 110.79 7.07E-05 109040000 21401 22228 16929 18607 32364 21806 31680 31898 21042 36898 TRUE FALSE FALSE 26161.57862 24827.37124 23191.74157 19623.45329 29141.72652 22947.72844 24911.3092 24074.96549 25264.93639 27700.00766 0.944461061 0.896294743 0.837246757 0.708427721 1.052047598 0.828437621 0.899324993 0.869132088 0.912091314 1 14.75759875 -8.138568013 2.867769022 0.999974892 0.87763574 0.161527785 0.082762367 1.035700349 16.33517147 0.078189356 0.020939592 7.27E-09 8.138568013 -0.122339152 KITES(ph)PR ddPTM_HeLa_A485_30min_R1 1 KITESPR 7 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KIT(0.084)ES(0.916)PR 57.281 0.024824 871780000 1980200 2533900 1912700 2279000 2505800 2578100 3163500 3613700 2140700 3021400 TRUE FALSE FALSE 2420688.658 2830217.563 2620287.324 2403495.999 2256313.754 2713085.329 2487592.382 2727434.409 2570318.854 2268220.585 1.067219244 1.247769984 1.155217152 1.059639444 0.994750585 1.196129401 1.096715372 1.20245554 1.133187341 1 21.11312952 -5.024524875 23.22738702 1.105905389 1.168494312 0.09867701 0.077810164 668.5268681 633161.8256 0.021158753 0.036948461 9.45E-06 5.024524875 0.062588923 KITPPS(ph)SPHSLTSTLVSLGHEEALEMAGSK ddPTM_HeLa_A485_30min_R1 1 KITPPSSPHSLTSTLVSLGHEEALEMAGSK 30 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KIT(0.113)PPS(0.147)S(0.147)PHS(0.147)LT(0.147)S(0.147)T(0.147)LVS(0.003)LGHEEALEMAGSK 104.3 0.00011734 227800000 129300 162460 115770 70351 228970 153280 217310 201420 163220 189260 TRUE FALSE FALSE 158062.3389 181458.2838 158598.1406 74194.09699 206172.9428 161305.5038 170879.9432 152021.4292 195976.7569 142080.9651 1.112480752 1.277147039 1.116251853 0.522195897 1.451094752 1.135306927 1.202694134 1.069963377 1.379331544 1 17.11635376 KITSLSSS(ph)LDTSLDFSK ddPTM_HeLa_A486_30min_R1 2 KITSLSSSLDTSLDFSK 17 1 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 KIT(0.001)S(0.001)LS(0.007)S(0.035)S(0.956)LDTSLDFSK;KITSLS(0.001)S(0.056)S(0.943)LDTSLDFSK ; 192.63 2.31E-18 877310000 580410 439530 293810 284200 487920 457870 559660 619470 324150 659600 TRUE FALSE FALSE 539726.2562 404700.0421 407581.1005 661631.9627 426720.5239 401382.6547 419627.1485 478430.2039 352247.583 494431.8667 1.091608961 0.818515289 0.824342297 1.3381661 0.863052228 0.811805795 0.84870571 0.967636263 0.712428965 1 18.9154122 KIVDQIRPDR ddPTM_HeLa_A485_30min_R1 2 KIVDQIRPDR 10 2 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;J3QSF1;J3KRZ1;P17844;P17844-2;J3KTA4 A0A1X7SBZ2;P17844 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 126.19 0.0012792 419805000 166527 221608 192757 150750 246210 264531 277437 333965 202008 209686 FALSE FALSE TRUE 203570.3566 247523.1279 264065.8356 158985.0908 221696.4679 278381.4341 218160.3185 252059.5601 242549.1527 157415.1392 1.293206979 1.572422634 1.677512322 1.00997332 1.408355442 1.76845401 1.385891596 1.601240906 1.540824815 1 17.26421477 -10.20872191 4.576654227 0.999886973 1.47639695 0.324757796 0.204605241 0.000240901 4.17E-05 0.200683854 0.048661421 6.18E-11 10.20872191 0.476509977 KIVDQIRPDR ddPTM_HeLa_A486_30min_R1 1 KIVDQIRPDR 10 2 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;J3QSF1;J3KRZ1;P17844;P17844-2;J3KTA4 A0A1X7SBZ2;P17844 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 0 0 137.01 2.95E-05 362570000 966290 991520 837480 364380 1344500 923480 1066700 1111300 842100 1115100 FALSE FALSE TRUE 898558.0609 912948.3441 1161774.684 848295.0547 1175860.273 809550.4269 799800.3776 858281.2495 915093.906 835871.7019 1.074995192 1.092211092 1.38989594 1.014862751 1.406747316 0.968510389 0.95684586 1.026809793 1.094777947 1 19.67292199 -6.331742932 24.99999964 1.007780261 1.1907323 0.362424216 0.123486103 181.7226223 64619.83608 0.041910345 0.036961453 4.66E-07 6.331742932 0.182952039 KIVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_HeLa_A485_30min_R1 4 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR ;;; 144.28 9.48E-10 1519560000 642492 910998 762589 616123 1077340 1010921 1204790 1471180 759875 872920 TRUE FALSE FALSE 785412.1288 1017531.291 1044702.405 649780.2394 970076.2468 1063851.26 947376.7743 1110370.798 912374.9425 655317.1089 1.198522239 1.552731155 1.594193698 0.991550855 1.480315764 1.623414445 1.445676851 1.694402272 1.392264798 1 19.32183367 -8.034850571 23.11209078 0.999999992 1.453655355 0.310023028 0.19893521 2534.842343 1681047.369 0.194058968 0.05010581 9.23E-09 8.034850571 0.453655363 KIVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_HeLa_A486_30min_R1 5 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR ;;;; 141.64 1.11E-09 1941756000 418552 422850 344130 178787.7 549495 412067 503922 525058 320656 476700 TRUE FALSE FALSE 389213.6662 389341.826 477386.3521 416226.801 480572.2133 361230.3631 377835.3857 405513.7553 348450.7203 357331.2172 1.0892238 1.089582458 1.335977181 1.164820707 1.34489289 1.010911854 1.057381408 1.134839991 0.975147716 1 18.44690243 -6.290004183 24.96287933 1.045441503 1.203548439 0.46627917 0.090225797 714.5783166 624470.281 0.032280266 0.028473398 5.13E-07 6.290004183 0.158106936 KIVEPEVVGES(ph)DSEVEGDAWR ddPTM_HeLa_A485_30min_R1 3 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 KIVEPEVVGES(0.996)DS(0.004)EVEGDAWR;KIVEPEVVGES(0.991)DS(0.009)EVEGDAWR;KIVEPEVVGES(0.971)DS(0.029)EVEGDAWR ;; 196.3 1.01E-20 924350000 581077 972710 806590 617960 1176350 1102410 1140900 1584560 980020 945230 TRUE FALSE FALSE 710335.574 1086459.973 1104981.206 651717.59 1059228.464 1160130.483 897137.3947 1195944.176 1176701.025 709601.5567 1.001034408 1.53108454 1.557185431 0.918427509 1.492708765 1.634904084 1.264283296 1.685374228 1.65825598 1 19.43664965 -5.907122868 23.79941483 1.489678512 1.282660375 0.109271403 0.269716425 26.5388438 6784.683363 0.081871767 0.092833855 1.24E-06 5.907122868 -0.207018136 KIVEPEVVGES(ph)DSEVEGDAWR ddPTM_HeLa_A486_30min_R1 6 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 KIVEPEVVGES(1)DSEVEGDAWR;KIVEPEVVGES(0.999)DS(0.001)EVEGDAWR;KIVEPEVVGES(0.983)DS(0.017)EVEGDAWR;KIVEPEVVGES(0.997)DS(0.003)EVEGDAWR;KIVEPEVVGES(0.999)DS(0.001)EVEGDAWR;KIVEPEVVGES(1)DSEVEGDAWR ;;;;; 219.96 9.42E-36 1526554000 1754830 1634900 1351397 609791 2273990 1579537 1906600 2132550 1351117 2043640 TRUE FALSE FALSE 1631825.479 1505344.57 1874694.11 1419624.265 1988764.97 1384669.784 1429548.514 1647014.918 1468232.909 1531899.242 1.065230293 0.982665523 1.223771158 0.926708641 1.298234842 0.9038909 0.933187037 1.075145723 0.958439608 1 20.54688998 KIVEPEVVGESDS(ph)EVEGDAWR ddPTM_HeLa_A485_30min_R1 1 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 KIVEPEVVGES(0.474)DS(0.526)EVEGDAWR 249.09 3.76E-47 447510000 336470 519570 454830 347820 604960 601880 653320 913410 505770 498420 TRUE FALSE FALSE 411316.5907 580329.1918 623090.5441 366820.5259 544728.0583 633393.5061 513732.8449 689394.7653 607273.3998 374173.0667 1.099268299 1.55096463 1.665246912 0.980349893 1.455818461 1.692782197 1.372981891 1.842448927 1.622974644 1 18.51334619 -5.997950214 24.99614219 1.553199717 1.346241846 0.072825846 0.280191686 155.7243919 1898933.021 0.085126375 0.095894509 1.00E-06 5.997950214 -0.206957871 KIYPTIWWLFR ddPTM_HeLa_A485_30min_R1 2 KIYPTIWWLFR 11 1 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 193.73 4.85E-14 343850000 171088 217707 209761 140156 298850 186318 320150 240533 97775 259675 FALSE FALSE TRUE 209145.9354 243165.9399 287360.3228 147812.3674 269095.4447 196073.3224 251747.3371 181541.9046 117397.5457 194942.8015 1.072857955 1.247370706 1.474075065 0.75823455 1.380381541 1.005799244 1.291390783 0.931257288 0.602215341 1 17.57269136 -7.465393497 5.1814891 0.788577319 1.173389739 0.351713438 0.210574681 0.20245917 11.47481291 0.117924695 0.052505203 3.42E-08 7.465393497 0.38481242 KIYPTIWWLFR ddPTM_HeLa_A486_30min_R1 2 KIYPTIWWLFR 11 1 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 185.25 1.94E-09 199761000 147268 191597 156396 102374 223510 220940 268670 237050 156199 203144 FALSE FALSE TRUE 136945.2737 176414.1559 216956.7196 238331.8457 195475.2917 193682.6692 201445.9243 183078.8898 169738.4551 152275.4202 0.899326192 1.158520238 1.424765201 1.565136681 1.283695632 1.271923394 1.322905063 1.202287865 1.114680589 1 17.21632356 -7.830654265 1.69470324 1.003882951 1.288075784 0.227296692 0.163183907 0.535957631 3.198904925 0.16711898 0.049237873 1.48E-08 7.830654265 0.284192833 KK(ac)YVIYIER ddPTM_HeLa_A485_30min_R1 2 KKYVIYIER 9 2 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 1 ; K(0.141)K(0.859)YVIYIER;K(0.087)K(0.913)YVIYIER 110.39 0.019366 104652000 117186 154744 150766 121421 186905 140303 176323 207971 145752 180589 FALSE TRUE FALSE 143253.6214 172839.9647 206540.6173 128053.9218 168296.0819 147649.0481 138650.1506 156965.7862 175003.0895 135571.4858 1.056664833 1.274899096 1.523481255 0.944549077 1.241382588 1.089086302 1.022708793 1.157808261 1.290854699 1 17.04869425 -5.276571903 24.99396094 1.114589809 1.284003501 0.24081541 0.144660356 1178.401363 1946329.675 0.040694176 0.06064094 5.29E-06 5.276571903 0.169413691 KK(ac)YVIYIER ddPTM_HeLa_A486_30min_R1 1 KKYVIYIER 9 2 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 1 K(0.141)K(0.859)YVIYIER 110.39 0.019366 36219000 90587 111940 92349 44148 152620 114850 127720 132960 108420 137480 FALSE TRUE FALSE 84237.31909 103069.4667 128109.006 102778.7751 133476.9765 100680.9747 95763.10512 102687.9105 117817.9329 103054.1132 0.817408607 1.000148985 1.243123657 0.997328219 1.295212509 0.976971919 0.929250684 0.996446501 1.14326279 1 16.65304256 -4.337376502 3.856338886 1.071706961 0.809364696 0.308621935 0.114536719 0.27235251 6.900895734 0.029301617 0.168168315 4.60E-05 4.337376502 -0.262342265 KKAENAEGQTPAIGPDGEPLDETS(ph)QMSDLPVK ddPTM_HeLa_A485_30min_R1 1 KKAENAEGQTPAIGPDGEPLDETSQMSDLPVK 32 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;A0A2R8Y7R0;A0A2R8YGP5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KKAENAEGQTPAIGPDGEPLDET(0.099)S(0.451)QMS(0.451)DLPVK 94.606 9.34E-05 129560000 127710 97959 49187 142390 138360 119690 205570 221750 109800 246440 TRUE FALSE FALSE 156118.6489 109414.4529 67383.31814 150168.4051 124584.3926 125956.7833 161648.2901 167365.4648 131835.8529 185007.0434 0.843852461 0.591406959 0.364220285 0.811690206 0.673403511 0.680821557 0.873741276 0.904643746 0.712599101 1 17.49722067 -6.569167704 1.016592281 0.882825174 0.62502523 0.340828278 0.14066622 0.632501162 1.33639525 0.094590513 0.064017182 2.70E-07 6.569167704 -0.257799944 KKAEPSEVDMNS(ph)PK ddPTM_HeLa_A485_30min_R1 2 KKAEPSEVDMNSPK 14 2 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK ; 202.5 3.28E-22 4112600000 2842700 1670180 910340 4472400 2430050 2651090 4937300 5262400 1917390 7252100 TRUE FALSE FALSE 3475048.808 1865493.022 1247112.648 4716715.887 2188105.69 2789896.973 3882405.521 3971788.149 2302192.586 5444284.935 0.638292971 0.342651614 0.229068218 0.866360953 0.401908738 0.51244507 0.713115784 0.729533483 0.422864088 1 22.37631114 -14 0.140097205 2.588336632 0.37494562 0.362303123 0.185915788 149.2760644 1.27931549 66.12238702 1.140433449 1.00E-14 14 -2.213391011 KKAEPSEVDMNS(ph)PK ddPTM_HeLa_A486_30min_R1 6 KKAEPSEVDMNSPK 14 2 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK;KKAEPSEVDMNS(1)PK ;;;;; 156.22 2.52E-08 4233490000 4948620 3422950 1305613 4010960 2899740 4846700 7269630 6125880 2843430 9809040 TRUE FALSE FALSE 4601747.293 3151702.976 1811181.319 9337717.583 2536027.57 4248763.432 5450691.684 4731150.851 3089900.802 7352792.538 0.625850283 0.42864027 0.246325639 1.269955263 0.344906722 0.577843508 0.741309054 0.643449523 0.420235004 1 22.80986085 -11.34311377 2.170072511 3.263035442 0.592587525 0.17387055 0.26882766 12429649.61 1131921.484 138574223.7 0.067102862 4.54E-12 11.34311377 -2.670447916 KKASLVALPEQT(ph)ASEEETPPPLLTK ddPTM_HeLa_A485_30min_R1 1 KKASLVALPEQTASEEETPPPLLTK 25 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KKAS(0.008)LVALPEQT(0.496)AS(0.496)EEETPPPLLTK 84.097 0.0048035 109690000 110600 186080 65734 71744 135310 202500 233640 431570 99780 91720 TRUE FALSE FALSE 135202.5884 207840.4373 90051.74202 75663.19305 121838.0613 213102.5869 183720.9053 325726.7808 119804.9308 68855.89198 1.963558739 3.018484422 1.30782914 1.098863015 1.76946457 3.09490707 2.668194399 4.730557857 1.739937242 1 16.07129249 -6.256030479 23.84855919 2.881221383 1.827765269 0.115683092 1.029266445 400.9342156 1767772.657 0.339342025 0.329581972 5.55E-07 6.256030479 -1.053456114 KKDAS(ph)DDLDDLNFFNQK ddPTM_HeLa_A485_30min_R1 1 KKDASDDLDDLNFFNQK 17 2 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 KKDAS(1)DDLDDLNFFNQK 225.5 1.11E-34 278800000 456020 258800 147320 724790 397890 389720 753950 726910 280180 1071800 TRUE FALSE FALSE 557460.0757 289064.4087 201819.7985 764383.4424 358274.6745 410125.1366 592862.4233 548634.1827 336409.556 804619.985 0.692824049 0.359255815 0.250826231 0.949993111 0.445271906 0.509712839 0.736822891 0.681855028 0.41809744 1 19.61794805 -14 0.211863322 3.094792702 0.50089114 0.298622009 0.19843119 187.3901907 1.869943655 167.2636673 0.417521889 1.00E-14 14 -2.593901561 KKDAS(ph)DDLDDLNFFNQK ddPTM_HeLa_A486_30min_R1 1 KKDASDDLDDLNFFNQK 17 2 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 KKDAS(1)DDLDDLNFFNQK 253.99 1.02E-51 407800000 477060 340800 132120 325920 312990 556070 778190 669770 295460 979460 TRUE FALSE FALSE 443620.5575 313793.7668 183280.4023 758758.2311 273731.8757 487467.7371 583478.6311 517277.992 321070.7107 734196.8408 0.604225642 0.427397326 0.249633875 1.033453413 0.372831726 0.663946928 0.794716892 0.704549466 0.437308761 1 19.48580738 -14 0.111034038 2.23251672 0.373098841 0.245378158 0.216852182 239.9652728 1.764067291 68.1421533 2.63213688 1.00E-14 14 -1.859417879 KKDELS(ph)DYAEK ddPTM_HeLa_A485_30min_R1 4 KKDELSDYAEK 11 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 1 0 KKDELS(1)DYAEK;KKDELS(1)DYAEK;KKDELS(1)DYAEK;KKDELS(1)DYAEK ;;; 188 4.89E-11 5300620000 5256990 2995160 1570210 9697340 4155140 4721140 9083110 7879550 3060320 12267500 TRUE FALSE FALSE 6426389.289 3345417.908 2151096.021 10227081.13 3741439.672 4968331.59 7142429.346 5947078.008 3674498.153 9209438.017 0.697804717 0.363259724 0.233575167 1.110500023 0.406261453 0.539482603 0.775555396 0.645759057 0.398992658 1 23.13468169 -11.51141773 2.223146776 6.810414194 0.576116642 0.222471064 0.238580799 19981487.77 1300040.853 585729682.4 0.064339531 3.08E-12 11.51141773 -6.234297552 KKDELS(ph)DYAEK ddPTM_HeLa_A486_30min_R1 3 KKDELSDYAEK 11 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 1 0 KKDELS(1)DYAEK;KKDELS(1)DYAEK;KKDELS(1)DYAEK ;; 185.62 6.19E-11 4079850000 2612630 2048490 554140 1661390 1427390 3048830 4094390 3598920 1526440 5695700 TRUE FALSE FALSE 2429498.129 1886160.192 768717.8484 3867799.882 1248353.436 2672696.353 3069930.316 2779524.48 1658753.048 4269459.647 0.569041127 0.441779604 0.180050384 0.905922576 0.292391436 0.626003423 0.719044228 0.651024886 0.388515921 1 22.02562206 -14 0.17690085 2.841521188 0.434891831 0.322722249 0.202861474 157.4589643 1.506420288 102.1597832 0.647834967 1.00E-14 14 -2.406629358 KKDFQHLIS(ph)SPLKK ddPTM_HeLa_A485_30min_R1 1 KKDFQHLISSPLKK 14 3 Q15361 Q15361 TTF1 Transcription termination factor 1 1 0 KKDFQHLIS(0.5)S(0.5)PLKK 161.35 7.78E-12 608110000 1474100 1056500 481560 1764900 1151000 1637600 2641200 2828200 995800 2558600 TRUE FALSE FALSE 1802008.459 1180048.485 659709.0834 1861312.018 1036402.399 1723342.204 2076886.043 2134579.516 1195647.926 1920788.108 0.938160983 0.614356409 0.343457501 0.96903558 0.539571437 0.897205786 1.08126765 1.111304004 0.622477785 1 20.87326695 -6.426253693 5.80853188 0.966596158 0.675674 0.280821015 0.210136869 0.294497503 14.40670134 0.074369556 0.065009794 3.75E-07 6.426253693 -0.290922158 KKDFQHLIS(ph)SPLKK ddPTM_HeLa_A486_30min_R1 1 KKDFQHLISSPLKK 14 3 Q15361 Q15361 TTF1 Transcription termination factor 1 1 0 KKDFQHLIS(0.5)S(0.5)PLKK 167.99 4.76E-12 612440000 2005300 897260 400410 644070 1039600 1422000 2054500 1778800 830770 2677200 TRUE FALSE FALSE 1864738.825 826157.8498 555459.4754 1499427.509 909203.6741 1246568.098 1540442.37 1373806.071 902781.8125 2006811.694 0.929204684 0.411676817 0.276787043 0.747169011 0.453058788 0.621168444 0.767606833 0.68457149 0.449858756 1 20.93647382 -6.524248886 18.44887144 0.698533683 0.548177302 0.109119703 0.210665459 4.178735538 56158.72977 0.078159943 0.061514432 2.99E-07 6.524248886 -0.150356381 KKDFQHLISS(ph)PLKK ddPTM_HeLa_A486_30min_R1 1 KKDFQHLISSPLKK 14 3 Q15361 Q15361 TTF1 Transcription termination factor 1 1 0 KKDFQHLIS(0.1)S(0.9)PLKK 170.89 3.44E-12 1092100000 1710900 809480 358270 563590 845650 1252100 1854200 1548800 752840 2275600 TRUE FALSE FALSE 1590974.745 745333.8567 497001.7388 1312066.002 739580.6916 1097628.632 1390259.548 1196172.05 818096.7774 1705774.948 0.932699092 0.436947358 0.291364192 0.769190569 0.4335746 0.643477988 0.815031051 0.701248457 0.479604169 1 20.70199589 -6.52206757 24.70297081 0.724814915 0.558294105 0.132302211 0.207542152 57.34333425 1746433.986 0.077097829 0.060496882 3.01E-07 6.52206757 -0.16652081 KKEEPSQNDIS(ph)PK ddPTM_HeLa_A485_30min_R1 6 KKEEPSQNDISPK 13 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK ;;;;; 154.82 1.44E-08 9822460000 3897110 2329700 1183762 7257670 3610330 3529310 6861450 6848610 2554740 11372750 TRUE FALSE FALSE 4764008.675 2602138.149 1621684.824 7654138.135 3250872.869 3714099.214 5395445.155 5168977.659 3067452.885 8537732.725 0.55799459 0.304780933 0.189943264 0.896507115 0.380765359 0.435021725 0.631952923 0.605427439 0.359281906 1 23.02542157 -14 0.236036977 3.832928548 0.433266923 0.391673993 0.190811726 175.1004734 1.750710179 237.9169654 0.314652704 1.00E-14 14 -3.399661625 KKEEPSQNDIS(ph)PK ddPTM_HeLa_A486_30min_R1 5 KKEEPSQNDISPK 13 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK ;;;; 145.43 6.47E-08 19584800000 5142950 3774160 1354125 4542770 2839413 5590630 8629980 6927190 3143410 11666600 TRUE FALSE FALSE 4782455.763 3475081.816 1878478.465 10575798.14 2483267.345 4900914.912 6470667.725 5350020.056 3415883.31 8745207.423 0.546865904 0.397369856 0.214800905 1.20932502 0.283957512 0.560411512 0.739910149 0.611765942 0.390600605 1 23.06006117 -11.49909161 2.186504648 6.486174628 0.555369502 0.204414669 0.265848739 15072200.96 582670.291 413066203.9 0.066157951 3.17E-12 11.49909161 -5.930805126 KKEESTAASETTEGSQGDSK(ac)NAK ddPTM_HeLa_A485_30min_R1 2 KKEESTAASETTEGSQGDSKNAK 23 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 1 ; KKEESTAASETTEGSQGDSK(1)NAK;KKEESTAASETTEGSQGDSK(1)NAK 302.11 2.28E-78 390740000 31156.9 28178.38 15931.74 65455.8 56721.1 138236.7 331267.8 448107 233284.2 575060 FALSE TRUE FALSE 38087.64491 31473.59642 21825.5536 69031.48461 51073.74812 145474.5599 260489.7283 338208.0556 280102.1991 431708.1252 0.088225453 0.072904804 0.050556272 0.15990314 0.118306201 0.336974338 0.603393156 0.783418323 0.648823089 1 18.71969672 -6.821802327 0.879459147 0.888127867 0.05906715 0.947281516 0.075304737 0.121704654 0.182006762 0.05899856 0.032835503 1.51E-07 6.821802327 -0.829060717 down KKEESTAASETTEGSQGDSK(ac)NAK ddPTM_HeLa_A486_30min_R1 1 KKEESTAASETTEGSQGDSKNAK 23 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 1 KKEESTAASETTEGSQGDSK(1)NAK 149.85 8.16E-13 487980000 8706.9 7763.7 3461.7 4160.3 7907.1 10287 14220 12285 6416.2 15945 FALSE TRUE FALSE 8096.591272 7148.476137 4802.162948 9685.38865 6915.317787 9017.894531 10662.0056 9487.97368 6972.361382 11952.26822 0.67741044 0.598085318 0.401778379 0.810338965 0.578577862 0.754492316 0.892048723 0.793822018 0.583350478 1 13.54499681 -6.098832472 1.260400919 0.803441915 0.587306876 0.320187507 0.137523432 0.569815154 1.86885923 0.062595024 0.065098901 7.96E-07 6.098832472 -0.216135039 KKEIQNGNLHES(ph)DSESVPR ddPTM_HeLa_A485_30min_R1 3 KKEIQNGNLHESDSESVPR 19 2 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 KKEIQNGNLHES(0.989)DS(0.01)ES(0.001)VPR;KKEIQNGNLHES(1)DSESVPR;KKEIQNGNLHES(1)DSESVPR ;; 285.82 2.31E-70 2852730000 2484470 2476320 917530 1586040 1517410 2587980 3028330 5175340 1665030 4305680 TRUE FALSE FALSE 3037131.78 2765904.083 1256962.529 1672681.349 1366331.332 2723482.631 2381302.556 3906079.75 1999186.248 3232353.216 0.939603928 0.855693638 0.388869175 0.517480992 0.422704835 0.842569623 0.736708644 1.208432213 0.618492508 1 21.62415343 -6.672292754 2.266219759 0.924626188 0.622871573 0.24424821 0.219468326 0.432637403 4.536121164 0.104189666 0.072775859 2.13E-07 6.672292754 -0.301754614 KKEIQNGNLHES(ph)DSESVPR ddPTM_HeLa_A486_30min_R1 3 KKEIQNGNLHESDSESVPR 19 2 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 KKEIQNGNLHES(1)DSESVPR;KKEIQNGNLHES(0.998)DS(0.002)ESVPR;KKEIQNGNLHES(0.999)DS(0.001)ESVPR ;; 314.76 5.81E-90 1582070000 2625250 1716700 1217133 511752 2347840 1802430 2141420 1880370 1525460 2484620 TRUE FALSE FALSE 2441233.532 1580662.44 1688439.494 1191384.519 2053352.014 1580064.512 1605614.066 1452250.799 1657688.101 1862454.98 1.310761097 0.848698335 0.906566608 0.639685003 1.10249753 0.848377292 0.862095505 0.779750821 0.890055394 1 20.82877412 -4.259923365 24.82701521 0.86787975 1.310761256 0.557414355 0.116237249 85.39161259 1398271.078 0.027534879 0.168797787 5.50E-05 4.259923365 0.442881506 KKELQGDGPPSS(ph)PTNDPTVK ddPTM_HeLa_A486_30min_R1 2 KKELQGDGPPSSPTNDPTVK 20 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KKELQGDGPPS(0.111)S(0.886)PT(0.003)NDPTVK;KKELQGDGPPS(0.169)S(0.662)PT(0.169)NDPTVK ; 166.89 8.81E-14 588910000 441750 394110 226341 157776 409770 401680 474010 471060 324900 569790 TRUE FALSE FALSE 410785.6062 362879.2883 313986.2968 367310.5016 358372.8256 352124.8056 355407.6844 363809.9212 353062.5936 427110.8753 0.961777445 0.849613787 0.735140019 0.859988642 0.83906275 0.824434183 0.832120428 0.851792689 0.826629838 1 18.70425111 -10.75422711 3.416520015 1.023254982 0.839230348 0.452571623 0.051939774 38829111.43 2793232.672 7140276.147 0.012609469 1.76E-11 10.75422711 -0.184024634 KKELQGDGPPSS(ph)PTNDPTVKYETQPR ddPTM_HeLa_A485_30min_R1 1 KKELQGDGPPSSPTNDPTVKYETQPR 26 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KKELQGDGPPS(0.006)S(0.967)PT(0.026)NDPTVKYETQPR 100.66 0.0014355 59969000 27200 38722 19362 27432 63365 74485 105400 174440 30125 43736 TRUE FALSE FALSE 33250.54616 43250.20106 26524.80952 28930.5407 57056.15811 78384.91942 82880.42896 131658.3165 36170.81118 32833.4201 1.012704313 1.317261526 0.807860084 0.881130891 1.737746416 2.387351643 2.524270353 4.009887367 1.10164616 1 15.00287742 -6.014065014 2.794335139 2.412414058 1.013847351 0.314740896 0.803327329 0.279729 4.40949526 0.268975181 0.289898961 9.68E-07 6.014065014 -1.398566706 KKEPAITSQNS(ph)PEAR ddPTM_HeLa_A485_30min_R1 8 KKEPAITSQNSPEAR 15 2 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 KKEPAITS(0.005)QNS(0.995)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR ;;;;;;; 276.3 1.35E-58 93036280000 11758880 11802500 9020700 11895540 13398210 14626440 18925330 20362440 11332760 16484560 TRUE FALSE FALSE 14374602.29 13182699.71 12357832.31 12545363.23 12064237.17 15392257.78 14881778.64 15368519.66 13607140.98 12375262.57 1.161559378 1.065246061 0.998591524 1.013745216 0.974867168 1.24379242 1.202542456 1.241874229 1.099543618 1 23.5609558 -6.260618316 24.99969329 1.175479679 1.03997838 0.313655431 0.082720971 80.07727485 2438216.734 0.027854377 0.026299785 5.49E-07 6.260618316 -0.135501298 KKEPAITSQNS(ph)PEAR ddPTM_HeLa_A486_30min_R1 9 KKEPAITSQNSPEAR 15 2 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITS(0.002)QNS(0.998)PEAR;KKEPAITS(0.002)QNS(0.998)PEAR;KKEPAITSQNS(1)PEAR;KKEPAIT(0.001)S(0.002)QNS(0.997)PEAR;KKEPAITSQNS(1)PEAR;KKEPAITSQNS(1)PEAR ;;;;;;;; 225.83 3.95E-34 92378200000 19365630 17292890 10153060 6678406 17762020 17681130 20964150 20608760 14320320 23445740 TRUE FALSE FALSE 18008199.34 15922538.42 14084596.74 15547666.68 15534141.83 15499811.95 15718697.93 15916595.23 15561616.87 17574774.1 1.024661782 0.905988227 0.801409831 0.884658124 0.883888563 0.881935202 0.894389757 0.905650061 0.885451886 1 24.06700281 -9.644384989 5.20444797 1.000000003 0.893000592 0.265620242 0.051367505 67713502.85 184068059.6 13.10737122 0.013077686 2.27E-10 9.644384989 -0.106999411 KKEPPRAS(ph)PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR ddPTM_HeLa_A485_30min_R1 1 KKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR 47 3 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 0 KKEPPRAS(1)PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR 194.91 1.29E-25 1872900000 121990 122280 108670 130960 151550 156860 190010 215870 125180 190060 TRUE FALSE FALSE 149126.2546 136579.5823 148871.5551 138114.0132 136461.1499 165072.947 149412.8113 162927.544 150302.4778 142681.5398 1.045168526 0.957233728 1.043383435 0.967987964 0.956403681 1.156932756 1.047176891 1.141896452 1.053412221 1 17.12243916 -6.248467601 24.99837591 1.086708022 0.993285396 0.405485408 0.051641553 699.3757115 1347793.028 0.015957223 0.015856716 5.64E-07 6.248467601 -0.093422626 KKEPPRAS(ph)PPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR ddPTM_HeLa_A486_30min_R1 1 KKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR 47 3 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 0 KKEPPRAS(0.995)PPGGLAEPPGS(0.004)AGPQAGPTVVPGSATPMETGIAETPEGR 64.993 0.0016257 1679400000 61992 54330 35880 21764 64737 63807 62247 67171 45833 65428 TRUE FALSE FALSE 57646.68093 50024.69293 49773.6969 50667.69189 56617.08181 55935.14108 46672.14222 51877.62963 49805.84134 49044.40294 1.175397751 1.019987806 1.014870075 1.033098353 1.154404548 1.140499991 0.951630348 1.057768604 1.01552549 1 15.58180088 -6.760278132 24.99996882 1.011045168 1.083506193 0.326315201 0.05818992 46.56928447 1002604.637 0.02458955 0.017943303 1.74E-07 6.760278132 0.072461025 KKEQSEVSVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 KKEQSEVSVSPR 12 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 KKEQSEVSVS(1)PR;KKEQSEVS(0.005)VS(0.995)PR;KKEQSEVSVS(1)PR;KKEQSEVSVS(1)PR ;;; 200.77 3.38E-17 5148030000 3348840 3538100 2574780 3587190 4178800 4514700 5842180 6883700 3557380 4844480 TRUE FALSE FALSE 4093777.905 3951850.018 3527298.268 3783149.106 3762743.999 4751082.711 4593950.517 5195461.782 4271313.536 3636840.292 1.125641374 1.086616321 0.969879891 1.040229651 1.034618982 1.306376505 1.263170815 1.428564733 1.174457274 1 21.79425414 -6.256573914 24.83328 1.263090224 1.048204686 0.398719646 0.109627841 322.8267294 1647705.135 0.035272207 0.034214637 5.54E-07 6.256573914 -0.214885537 KKEQSEVSVS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KKEQSEVSVSPR 12 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 KKEQSEVS(0.008)VS(0.992)PR;KKEQSEVS(0.016)VS(0.984)PR;KKEQSEVSVS(1)PR;KKEQSEVSVS(1)PR ;;; 151.62 7.79E-08 4222740000 6347100 5310300 2850980 2259890 5162100 5487800 6537000 6832300 4057150 7507500 TRUE FALSE FALSE 5902201.066 4889492.488 3954955.808 5261138.129 4514621.283 4810771.032 4901373.459 5276734.438 4408827.029 5627573.134 1.04880042 0.868845659 0.70278177 0.934885785 0.802232361 0.854857132 0.870956866 0.937657195 0.783433093 1 22.42408147 -7.019417446 22.39197517 0.8971885 0.861323692 0.024917882 0.097176561 977.0717307 1126738.337 0.044408311 0.026228644 9.56E-08 7.019417446 -0.035864808 KKES(ph)SSMLATVK ddPTM_HeLa_A485_30min_R1 2 KKESSSMLATVK 12 2 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 KKES(0.992)S(0.007)S(0.002)MLATVK;KKES(0.627)S(0.263)S(0.11)MLATVK ; 217.32 3.11E-23 2833000000 1948780 1240460 602790 2567000 1482190 1924720 2853100 2816200 1195860 3266200 TRUE FALSE FALSE 2382279.388 1385521.006 825787.1052 2707228.71 1334617.959 2025495.363 2243511.877 2125522.534 1435858.133 2451996.45 0.971567225 0.565058325 0.336781526 1.104091611 0.544298488 0.826059664 0.914973542 0.866853838 0.585587362 1 21.22552546 -5.261018784 24.99999997 0.819907452 0.618527977 0.164607442 0.214992183 71.98025315 4278359.132 0.05838783 0.093667923 5.48E-06 5.261018784 -0.201379474 KKES(ph)SSMLATVK ddPTM_HeLa_A486_30min_R1 2 KKESSSMLATVK 12 2 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 KKES(0.989)S(0.01)S(0.001)MLATVK;KKES(0.957)S(0.017)S(0.025)MLATVK ; 127.78 2.54E-05 1169400000 785470 565030 199710 300134 453170 832140 1075150 1090660 521775 1300510 TRUE FALSE FALSE 730412.6092 520254.965 277043.0604 698727.1199 396329.193 729479.0274 806136.0982 842340.5269 567002.8771 974853.8311 0.749253463 0.533674843 0.284189333 0.716750653 0.406552429 0.7482958 0.826930225 0.86406854 0.581628608 1 19.89482639 -6.415245717 5.590082108 0.804418035 0.534507289 0.417658213 0.158320218 0.234738058 10.24737783 0.055221665 0.048276634 3.84E-07 6.415245717 -0.269910745 KKESS(ph)SMLATVK ddPTM_HeLa_A486_30min_R1 1 KKESSSMLATVK 12 2 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 KKES(0.293)S(0.695)S(0.012)MLATVK 218.98 2.80E-23 1434100000 1121500 750240 263730 541500 631120 1279300 1528700 1517800 836010 2013700 TRUE FALSE FALSE 1042888.641 690788.2501 365853.3189 1260639.366 551959.0446 1121472.973 1146203.091 1172230.073 908476.0199 1509456.413 0.690903449 0.457640409 0.242374219 0.835161158 0.365667428 0.742964794 0.759348254 0.776590873 0.601856411 1 20.52559767 -6.37116985 7.461645524 0.763358939 0.517614669 0.34406993 0.177684914 0.336004834 20.39341166 0.060911569 0.053611598 4.25E-07 6.37116985 -0.24574427 KKEVDAT(ph)SPAPSTSSTVK ddPTM_HeLa_A485_30min_R1 1 KKEVDATSPAPSTSSTVK 18 2 Q16666-3;Q16666-2;Q16666;H3BM18;X6RHM1;Q16666-6 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 KKEVDAT(0.5)S(0.5)PAPSTSSTVK 122.34 1.80E-05 224480000 251270 196270 115100 391560 243640 307320 531500 516140 219650 591470 TRUE FALSE FALSE 307164.1446 219222.0692 157680.2797 412949.9313 219382.3461 323410.8 417940.683 389555.8557 263731.7403 444027.4142 0.691768424 0.493712915 0.355113839 0.930009991 0.494073877 0.728357731 0.941249728 0.877323884 0.593953733 1 18.76028923 -6.121332059 0.893319923 0.84841153 0.545671357 0.304510688 0.176409558 0.744756138 1.294667863 0.103270962 0.110873902 7.56E-07 6.121332059 -0.302740173 KKFS(ph)FK ddPTM_HeLa_A485_30min_R1 2 KKFSFK 6 2 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 KKFS(1)FK;KKFS(1)FK ; 66.621 0.018274 2816100000 5839300 2897000 1694800 6483100 2996900 3477000 5101900 4679900 3292200 10542200 TRUE FALSE FALSE 7138232.14 3235778.949 2321777.047 6837255.337 2698518.113 3659050.344 4011837.386 3532147.187 3952914.342 7914223.555 0.901949773 0.408856147 0.293367635 0.863919915 0.340970671 0.462338512 0.506914842 0.446303691 0.499469634 1 22.91601639 -9.975012505 5.141193133 1.00000191 0.514557173 0.353339864 0.192361251 246102792.7 35.73795217 7601.005876 0.044582944 1.06E-10 9.975012505 -0.485444738 KKFS(ph)FK ddPTM_HeLa_A486_30min_R1 1 KKFSFK 6 2 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 KKFS(1)FK 78.934 0.015766 1261100000 4481000 3196600 687620 1597400 1307100 3563900 3923800 4212700 2142600 5458800 TRUE FALSE FALSE 4166905.04 2943289.774 953884.8791 3718827.928 1143151.33 3124222.253 2942023.738 3253560.173 2328322.293 4091880.949 1.018334866 0.719299953 0.233116479 0.90883092 0.279370623 0.763517388 0.718990551 0.795125815 0.569010272 1 21.96433274 -10.64744718 6.116788316 1.002372325 0.659854187 0.150008374 0.237001819 0.007445147 0.000429115 0.222822713 0.05372818 2.25E-11 10.64744718 -0.342518138 KKGDDS(ph)DEEDLCISNK ddPTM_HeLa_A486_30min_R1 2 KKGDDSDEEDLCISNK 16 2 Q9Y3M8-4;H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-2;Q9Y3M8 Q9Y3M8-4 STARD13 StAR-related lipid transfer protein 13 1 0 KKGDDS(1)DEEDLCISNK;KKGDDS(1)DEEDLCISNK ; 146.89 3.08E-08 492200000 466202 500634 126363 506331 373992 762040 1156040 991880 337180 1134800 TRUE FALSE FALSE 433523.6473 460961.9386 175294.1377 1178764.157 327082.436 668027.2527 866786.5647 766050.5766 366407.0339 850638.6937 0.509644871 0.541900976 0.206073553 1.38574011 0.38451394 0.785324319 1.018983231 0.900559288 0.430743436 1 19.69818696 -5.217705031 24.99884952 0.825291407 0.431475974 0.317197921 0.284335862 589.3143101 336855.2269 0.074462627 0.128972117 6.06E-06 5.217705031 -0.393815433 KKGEDLVGS(ph)LNGGHANVHPSQEQGEALSGHR ddPTM_HeLa_A485_30min_R1 1 KKGEDLVGSLNGGHANVHPSQEQGEALSGHR 31 2 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 KKGEDLVGS(1)LNGGHANVHPSQEQGEALSGHR 199.58 3.27E-29 294960000 94825 150750 106130 55399 164630 110570 156660 172680 103130 99840 TRUE FALSE FALSE 115918.4941 168378.9011 145391.9034 58425.30709 148238.8591 116359.2742 123188.3112 130329.9592 123827.245 74951.72542 1.546575392 2.246497999 1.939807291 0.779505832 1.977791149 1.552456245 1.643568717 1.738852021 1.652093322 1 16.19367407 -11.47330204 0.337134625 1.55E-18 1.715096508 0.235655018 0.364453142 85.2128443 3.410062364 63.71090958 0.312909911 3.36E-12 11.47330204 1.715096508 KKGEDLVGS(ph)LNGGHANVHPSQEQGEALSGHR ddPTM_HeLa_A486_30min_R1 1 KKGEDLVGSLNGGHANVHPSQEQGEALSGHR 31 2 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 KKGEDLVGS(1)LNGGHANVHPSQEQGEALSGHR 95.371 0.00013443 535090000 236490 238730 317230 63827 305560 174510 212880 189970 215160 138270 TRUE FALSE FALSE 219913.2722 219812.1654 440069.9517 148592.4816 267233.8156 152980.7305 159615.1724 146717.978 233810.242 103646.292 2.121766905 2.120791406 4.245882252 1.43364976 2.578324901 1.475988456 1.539998868 1.415564177 2.255847628 1 16.66130898 -5.933694686 1.468909361 1.566510356 2.664028868 0.292125046 0.734357218 0.521402025 2.323787123 0.289072073 0.34187858 1.16E-06 5.933694686 1.097518512 KKGEEEVTAVDGYET(ph)DHQDYCEVCQQGGEIILCDTCPR ddPTM_HeLa_A486_30min_R1 1 KKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPR 38 2 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 KKGEEEVT(0.04)AVDGY(0.311)ET(0.338)DHQDY(0.311)CEVCQQGGEIILCDTCPR 103.16 3.57E-05 255560000 77023 134280 101220 56127 148470 108630 155750 160330 100900 105150 TRUE FALSE FALSE 71624.08545 123639.1638 140415.0948 130666.4925 129847.5082 95228.33507 116779.7026 123826.359 109646.0932 78819.75559 0.908707277 1.568631656 1.781470822 1.657788603 1.647398006 1.208178513 1.481604476 1.571006635 1.391099128 1 16.26626966 -6.248300395 24.92010358 1.375517326 1.538882225 0.090266194 0.264858083 2169.094925 4114023.19 0.089447293 0.088956953 5.65E-07 6.248300395 0.163364899 KKGFNGCDS(ph)PEPDGEDSLEQSPLLEDK ddPTM_HeLa_A485_30min_R1 1 KKGFNGCDSPEPDGEDSLEQSPLLEDK 27 2 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 KKGFNGCDS(0.992)PEPDGEDS(0.008)LEQSPLLEDK 75.654 0.0036323 290340000 36396 22387 17204 74669 43136 32495 67600 59965 25997 96938 TRUE FALSE FALSE 44492.16464 25004.96491 23568.47552 78747.9784 38841.22838 34196.38795 53156.70776 45258.48973 31214.35944 72773.14061 0.611381675 0.343601564 0.323862284 1.082102239 0.533730275 0.469903974 0.730444053 0.621912004 0.428926925 1 16.15111845 -11.39654535 2.185105227 4.127135197 0.57479857 0.274715692 0.208693474 13226889.61 1154117.661 204871980 0.055575656 4.01E-12 11.39654535 -3.552336627 KKGGSSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A485_30min_R1 2 KKGGSSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 36 3 H7C2H0 H7C2H0 CHD3 1 0 KKGGSSDEGPEPEAEES(1)DLDSGSVHSASGRPDGPVR;KKGGSSDEGPEPEAEES(1)DLDSGSVHSASGRPDGPVR ; 131.79 1.89E-06 781130000 144171 134188 101018 120689 209112 177538 273390 302760 140658 250440 TRUE FALSE FALSE 176241.3416 149880.1193 138388.7619 127281.9345 188292.075 186833.6152 214977.9931 228507.6353 168886.7704 188009.917 0.937404496 0.797192625 0.736071608 0.676995855 1.001500761 0.993743405 1.143439647 1.215402033 0.898286501 1 17.52044924 -5.900161078 5.280568368 1.062257798 0.785056339 0.60240806 0.10175179 0.142404182 6.230521841 0.033121136 0.037773346 1.26E-06 5.900161078 -0.277201459 KKGGSSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_HeLa_A486_30min_R1 1 KKGGSSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 36 3 H7C2H0 H7C2H0 CHD3 1 0 KKGGSSDEGPEPEAEES(0.999)DLDS(0.001)GSVHSASGRPDGPVR 104.51 9.00E-05 327310000 201060 152970 74127 7089.5 166560 165880 202710 189400 124470 126460 TRUE FALSE FALSE 186966.7323 140848.1001 102830.9596 16504.71428 145668.4917 145415.4121 151989.814 146277.7546 135259.1598 94793.59288 1.972356217 1.485839874 1.08478808 0.174112129 1.536691323 1.534021527 1.603376445 1.543118581 1.426880823 1 16.53250193 KKGVEPSPS(ph)PIKPGDIK ddPTM_HeLa_A486_30min_R1 1 KKGVEPSPSPIKPGDIK 17 3 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 KKGVEPS(0.002)PS(0.998)PIKPGDIK 164.35 6.59E-12 618500000 1182700 835190 242630 625660 599460 1263800 1742000 1472500 687650 2410400 TRUE FALSE FALSE 1099798.837 769006.5027 336582.8339 1456568.099 524270.1371 1107885.205 1306133.175 1137243.894 747256.0557 1806820.151 0.608693033 0.425613198 0.186284636 0.806150019 0.290161772 0.613168502 0.722890529 0.629417319 0.413575228 1 20.78502148 -14 0.177096012 2.915944382 0.420179742 0.381797456 0.183013395 138.2507889 1.32316453 93.15568948 0.587642608 1.00E-14 14 -2.49576464 KKHIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 KKHIKEEPLSEEEPCTSTAIASPEK 25 3 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 KKHIKEEPLS(0.999)EEEPCT(0.001)STAIAS(0.999)PEK 112.73 0.00013422 141540000 108360 46595 24236 92336 68058 104960 186730 168410 47830 236220 TRUE FALSE FALSE 100764.5236 42902.6425 33620.82826 214962.8744 59521.53102 92011.10236 140008.179 130066.7194 51975.94291 177068.9745 0.569069335 0.242293392 0.189874191 1.214006435 0.336148844 0.519634242 0.790698537 0.734553977 0.293535008 1 17.43395192 -14 0.072532638 2.312218458 0.085700121 0.164227208 0.297274647 555.1317515 2.88148193 124.690104 14.40648708 1.00E-14 14 -2.226518337 KKIEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_A485_30min_R1 2 KKIEEAMDGSETPQLFTVLPEKR 23 3 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KKIEEAMDGS(0.002)ET(0.998)PQLFTVLPEKR;KKIEEAMDGSET(1)PQLFTVLPEKR ; 224.91 1.41E-38 934140000 501930 406670 215815 465720 496060 675650 963670 1140080 328231 600890 TRUE FALSE FALSE 613582.5969 454226.5189 295653.9493 491161.1043 446670.5246 711025.9892 757774.032 860473.5924 394103.951 451099.1816 1.360194436 1.006932705 0.65540786 1.088809567 0.990182521 1.576207669 1.679839075 1.90750422 0.873652552 1 18.78308514 -6.255179404 24.06419609 1.48118462 1.003096151 0.241490242 0.329667995 361.6829299 1390358.776 0.109013654 0.10634805 5.56E-07 6.255179404 -0.478088469 KKIEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_A486_30min_R1 2 KKIEEAMDGSETPQLFTVLPEKR 23 3 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KKIEEAMDGSET(1)PQLFTVLPEKR;KKIEEAMDGS(0.008)ET(0.992)PQLFTVLPEKR ; 202.14 3.51E-29 1110330000 1321770 919410 431350 643370 1036520 1094950 1620270 1533880 737630 1649560 TRUE FALSE FALSE 1229120.749 846552.6032 598380.272 1497797.874 906509.9964 959866.2016 1214861.309 1184649.008 801568.3623 1236499.439 0.994032597 0.684636464 0.483930888 1.211321111 0.733126088 0.776277102 0.982500493 0.958066758 0.648256147 1 20.23783015 -5.242223771 24.99136877 0.890775606 0.717243699 0.159377144 0.188814773 1616.833622 2102813.256 0.05052805 0.08733872 5.73E-06 5.242223771 -0.173531907 KKIYPTIWWLFR ddPTM_HeLa_A485_30min_R1 2 KKIYPTIWWLFR 12 2 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 198.32 3.09E-14 378050000 705720 747360 474280 330200 656530 723230 1324860 1224960 213540 571900 FALSE FALSE TRUE 862704.9793 834757.2508 649735.9084 348237.9899 591163.568 761097.2045 1041792.838 924536.6393 256395.5193 429335.855 2.009394205 1.944298947 1.513351146 0.811108566 1.376925689 1.772731524 2.426521861 2.153411201 0.597191025 1 18.71174714 -6.276590613 23.307391 1.71434374 1.512999672 0 0.583549334 1768.719052 2720836.393 0.215201417 0.190699775 5.29E-07 6.276590613 -0.201344068 KKIYPTIWWLFR ddPTM_HeLa_A486_30min_R1 2 KKIYPTIWWLFR 12 2 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 203.61 1.88E-14 276430000 645000 532280 261060 404090 527180 525610 832210 693710 380880 774660 FALSE FALSE TRUE 599788.8308 490100.1943 362149.4234 940741.9416 461056.1686 460765.5822 623982.2558 535767.3766 413894.9851 580680.0938 1.032907512 0.844010669 0.623664264 1.620069211 0.793993411 0.793492987 1.074571459 0.922654974 0.712776259 1 19.14738405 -7.534064045 24.25862554 0.843497261 0.965020924 0.028242189 0.26021517 678.3406916 1471133.38 0.173576148 0.065745545 2.92E-08 7.534064045 0.121523663 KKLDDQS(ph)EDEALELEGPLITPGSGSIYSSPGLYSK ddPTM_HeLa_A486_30min_R1 1 KKLDDQSEDEALELEGPLITPGSGSIYSSPGLYSK 35 2 Q96AC1;Q96AC1-3;Q96AC1-2;G3V3J0 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 KKLDDQS(0.844)EDEALELEGPLIT(0.095)PGS(0.026)GS(0.028)IY(0.004)S(0.003)SPGLYSK 48.388 0.012174 631310000 65145 60407 16094 42113 51645 74830 99077 95282 33103 105240 TRUE FALSE FALSE 60578.67191 55620.12932 22326.02781 98041.19227 45167.20253 65598.23542 74286.88667 73588.36859 35972.39469 78887.219 0.767914913 0.705058817 0.283011977 1.242801984 0.572554123 0.83154453 0.941684694 0.932830052 0.455997754 1 16.26750396 -5.248627235 24.99803805 0.842118884 0.597301654 0.20989333 0.237693159 1335.697458 2606102.584 0.062445065 0.107278872 5.64E-06 5.248627235 -0.24481723 KKLGAGEGGEASVS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 KKLGAGEGGEASVSPEK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KKLGAGEGGEASVS(1)PEK;KKLGAGEGGEASVS(1)PEK ; 151.45 1.91E-08 2131620000 1097830 712190 343610 1618060 848150 1027670 1640490 1404590 701530 2184770 TRUE FALSE FALSE 1342038.496 795474.4253 470725.6378 1706450.521 763705.208 1081477.212 1289985.91 1060112.1 842320.6362 1640147.047 0.81824279 0.485001895 0.287002095 1.040425323 0.465632157 0.659378203 0.786506254 0.646351864 0.513564097 1 20.64539373 -10.51945599 2.955287242 1.013981325 0.631665053 0.228170487 0.202156654 67139681.71 74215186.22 7544480.954 0.049912484 3.02E-11 10.51945599 -0.382316272 KKLGAGEGGEASVS(ph)PEK ddPTM_HeLa_A486_30min_R1 3 KKLGAGEGGEASVSPEK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KKLGAGEGGEASVS(1)PEK;KKLGAGEGGEASVS(1)PEK;KKLGAGEGGEASVS(1)PEK ;; 172 1.39E-12 3459360000 1417600 1065830 328782 844440 762720 1419260 1858710 1531760 847540 2729410 TRUE FALSE FALSE 1318233.56 981369.7491 456095.1955 1965898.996 667052.5455 1244166.131 1393641.099 1183011.686 921005.4496 2045947.971 0.644314313 0.479665057 0.222926097 0.960874384 0.326035928 0.608112303 0.681171329 0.578221784 0.450160739 1 20.96433803 -11.21715521 2.264503851 2.395384096 0.550336841 0.329169042 0.192651121 10643482.86 1803331.508 76193670.72 0.046072612 6.07E-12 11.21715521 -1.845047255 KKLGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_A485_30min_R1 2 KKLGAGEGGEASVSPEKTSTTSK 23 3 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KKLGAGEGGEAS(0.03)VS(0.969)PEKTSTTSK;KKLGAGEGGEAS(0.178)VS(0.816)PEKT(0.002)S(0.003)T(0.001)TSK ; 116.34 0.00060441 1493750000 825340 665110 294540 915440 1062670 1238420 2253800 3011600 675480 1302600 TRUE FALSE FALSE 1008934.036 742888.8288 403502.6028 965448.1692 956866.8435 1303261.756 1772257.218 2273000.378 811042.6401 977885.7926 1.031750377 0.759688743 0.412627534 0.987281108 0.978505722 1.332734115 1.812335583 2.324402701 0.829383806 1 19.89930646 -6.232192974 2.027884783 1.596456797 0.772776367 0.352534281 0.421382214 0.318474887 2.573494565 0.165720651 0.155278684 5.86E-07 6.232192974 -0.823680431 KKLGVSVS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 KKLGVSVSPSR 11 2 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 KKLGVSVS(0.687)PS(0.313)R;KKLGVSVS(0.997)PS(0.003)R ; 179.79 1.49E-10 4820000000 2138330 3452800 2107920 1556780 2837400 3810900 4548200 6583400 2228670 2342900 TRUE FALSE FALSE 2613994.131 3856574.925 2887727.326 1641822.949 2554898.493 4010432.831 3576439.915 4968810.828 2675943.626 1758858.148 1.486188147 2.192658305 1.641819341 0.933459558 1.452589281 2.280134322 2.033387354 2.825020786 1.521409575 1 20.7462077 -6.251992202 24.50117662 2.052391517 1.549337821 0.097618419 0.534202401 944.7337182 2450159.397 0.176435803 0.174155445 5.60E-07 6.251992202 -0.503053696 KKLGVSVS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 KKLGVSVSPSR 11 2 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 KKLGVSVS(0.966)PS(0.034)R;KKLGVS(0.004)VS(0.993)PS(0.002)R ; 139.58 5.73E-06 2464100000 2794300 2051550 1209330 780870 2256100 1751530 2336500 2496600 1339960 2895000 TRUE FALSE FALSE 2598434 1888977.706 1677614.963 1817904.823 1973118.901 1535444.037 1751882.987 1928178.68 1456108.812 2170073.157 1.197394655 0.870467293 0.773068391 0.837715916 0.90924073 0.707554044 0.807292133 0.888531649 0.670995264 1 21.04931225 -4.269223078 3.571588749 0.818955798 1.238312642 0.598490692 0.090987508 0.171782966 3.965026157 0.021492648 0.191422437 5.38E-05 4.269223078 0.419356844 KKLPVDSVFNKFEDEDS(ph)DDVPR ddPTM_HeLa_A485_30min_R1 1 KKLPVDSVFNKFEDEDSDDVPR 22 3 P49756 P49756 RBM25 RNA-binding protein 25 1 0 KKLPVDSVFNKFEDEDS(1)DDVPR 131.95 1.50E-06 180750000 86595 50885 35574 111150 91917 84205 146060 158760 70721 146990 TRUE FALSE FALSE 105857.759 56835.55811 48734.30296 117221.8431 82765.42074 88613.84359 114853.0878 119823.8611 84914.05601 110348.0982 0.959307508 0.515056979 0.441641531 1.062291467 0.750039395 0.803039156 1.040825259 1.085871556 0.769510825 1 16.75170224 -5.267057881 24.99788081 0.925604514 0.626307502 0.37959941 0.17051605 472.3019738 2101370.468 0.048389815 0.074096403 5.41E-06 5.267057881 -0.299297012 KKLPVDSVFNKFEDEDS(ph)DDVPR ddPTM_HeLa_A486_30min_R1 1 KKLPVDSVFNKFEDEDSDDVPR 22 3 P49756 P49756 RBM25 RNA-binding protein 25 1 0 KKLPVDSVFNKFEDEDS(1)DDVPR 138.11 3.15E-06 339630000 340690 290130 82084 199100 273580 388250 565400 555680 222460 605200 TRUE FALSE FALSE 316809.3903 267139.0422 113869.1231 463514.862 239265.0454 340351.6624 423930.9398 429163.7944 241743.0119 453653.9808 0.698350293 0.588860791 0.251004351 1.021736569 0.527417493 0.75024507 0.934480811 0.946015714 0.532879732 1 18.79123279 -5.862174744 0.966300081 0.841011818 0.55646104 0.203997001 0.214294673 0.899845517 1.820125266 0.104791657 0.146750195 1.37E-06 5.862174744 -0.284550777 KKPCSETS(ph)QIEDTPSSKPTLLANGGHGVEGSDTTGS(ph)PTEFLEEK ddPTM_HeLa_A485_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 2 0 KKPCS(0.08)ET(0.39)S(0.427)QIEDT(0.06)PS(0.018)S(0.02)KPT(0.006)LLANGGHGVEGSDT(0.008)T(0.083)GS(0.866)PT(0.042)EFLEEK 104.33 6.33E-07 826030000 151660 86779 48684 198390 126320 147370 237060 241530 105500 282630 TRUE FALSE FALSE 185396.2438 96927.04917 66694.23751 209227.5433 113743.1373 155086.0653 186410.1944 182294.3888 126672.8823 212175.5424 0.873787062 0.456824797 0.314335181 0.986105849 0.536080342 0.730932809 0.878565891 0.859167775 0.597019246 1 17.69489884 -6.117516156 0.900203247 0.826752866 0.585422095 0.159480508 0.205035431 1.077531185 1.900520046 0.119223969 0.128266161 7.63E-07 6.117516156 -0.241330771 KKPCSETSQIEDTPS(ph)SKPTLLANGGHGVEGSDTTGSPT(ph)EFLEEK ddPTM_HeLa_A486_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 2 0 KKPCS(0.001)ET(0.001)S(0.001)QIEDT(0.025)PS(0.293)S(0.293)KPT(0.293)LLANGGHGVEGS(0.089)DT(0.029)T(0.093)GS(0.405)PT(0.478)EFLEEK 59.53 0.0092662 868580000 149550 94786 31037 44285 82685 140690 200860 160960 83296 184600 TRUE FALSE FALSE 139067.3173 87274.81216 43055.3576 103097.718 72313.87629 123333.0982 150602.7035 124312.9217 90516.16435 138374.9585 1.005003498 0.630712472 0.311149923 0.745060517 0.522593662 0.89129637 1.088366748 0.898377301 0.654136885 1 17.07822336 -6.314416407 8.386516335 0.912169237 0.629610098 0.316344505 0.193143338 0.448144552 66.69840301 0.069749809 0.06159437 4.85E-07 6.314416407 -0.28255914 KKPCSETSQIEDTPSSKPT(ph)LLANGGHGVEGSDTTGSPTEFLEEK ddPTM_HeLa_A486_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 1 0 KKPCS(0.002)ET(0.002)S(0.002)QIEDT(0.024)PS(0.118)S(0.118)KPT(0.159)LLANGGHGVEGS(0.159)DT(0.127)T(0.127)GS(0.127)PT(0.037)EFLEEK 41.284 0.017924 3780400000 1580100 1093700 380240 303700 783230 1359400 1547400 1470900 865980 1611800 TRUE FALSE FALSE 1469343.15 1007031.229 527479.1112 707028.9481 684989.9901 1191691.049 1160224.153 1136008.18 941043.8437 1208194.789 1.216147564 0.833500722 0.436584494 0.585194502 0.566953273 0.986340167 0.960295611 0.940252507 0.77888421 1 20.20442164 -6.276076853 24.70416028 0.931116609 0.70946785 0.200489254 0.203526965 1191.065789 2010195.991 0.077010842 0.068209834 5.30E-07 6.276076853 -0.221648759 KKPCSETSQIEDTPSSKPTLLANGGHGVEGS(ph)DT(ph)TGSPTEFLEEK ddPTM_HeLa_A486_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 2 0 KKPCS(0.003)ET(0.003)S(0.003)QIEDT(0.027)PS(0.03)S(0.031)KPT(0.034)LLANGGHGVEGS(0.799)DT(0.444)T(0.147)GS(0.437)PT(0.043)EFLEEK 63.444 0.0054016 429460000 276560 215640 61092 111270 162240 240710 372550 308380 171860 383430 TRUE FALSE FALSE 257174.5722 198551.9011 84748.4585 259042.1833 141890.3464 211013.6476 279334.0496 238168.6059 186756.9632 287416.6323 0.894779714 0.690815627 0.29486275 0.901277637 0.493674793 0.734173405 0.971878514 0.828652831 0.649777856 1 18.13278402 -6.527877236 23.95801093 0.848973805 0.647051786 0.211418207 0.188011502 136.3263525 653402.2805 0.070484365 0.054820287 2.97E-07 6.527877236 -0.20192202 KKPCSETSQIEDTPSSKPTLLANGGHGVEGS(ph)DTT(ph)GSPTEFLEEK ddPTM_HeLa_A486_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 2 0 KKPCS(0.008)ET(0.008)S(0.009)QIEDT(0.038)PS(0.154)S(0.163)KPT(0.193)LLANGGHGVEGS(0.409)DT(0.18)T(0.504)GS(0.308)PT(0.027)EFLEEK 68.545 0.0014039 681060000 190520 139090 54421 74406 121120 176350 257760 214480 114920 270670 TRUE FALSE FALSE 177165.5318 128068.0018 75494.26864 173220.9283 105928.0002 154593.73 193265.7217 165647.5861 124881.3581 202892.4702 0.873199147 0.631211211 0.372090046 0.853757303 0.522089361 0.761949075 0.95255246 0.816430427 0.615505139 1 17.6303558 -6.514299157 24.13496082 0.834599732 0.644906894 0.235919846 0.165843075 402.4608995 1132158.475 0.060586278 0.049394304 3.06E-07 6.514299157 -0.189692837 KKPCSETSQIEDTPSSKPTLLANGGHGVEGS(ph)DTTGS(ph)PTEFLEEK ddPTM_HeLa_A485_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 2 0 KKPCSETSQIEDT(0.003)PS(0.002)S(0.002)KPT(0.002)LLANGGHGVEGS(0.99)DT(0.16)T(0.147)GS(0.605)PT(0.09)EFLEEK 102.91 2.28E-06 1081200000 69618 32943 23482 74362 45671 69158 105950 96373 43084 110220 TRUE FALSE FALSE 85104.28392 36795.39728 32168.96897 78424.20777 41123.83488 72779.00594 83312.91697 72737.37064 51730.56361 82744.18245 1.028522869 0.444688632 0.388776202 0.947791197 0.496999712 0.879566439 1.006873408 0.879063258 0.625186715 1 16.33637026 -6.291668537 23.0545861 0.878625502 0.650088463 0.202159506 0.214746473 433.0487256 330266.9185 0.075109603 0.06625395 5.11E-07 6.291668537 -0.228537039 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT(ph)GSPTEFLEEK ddPTM_HeLa_A486_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 1 0 KKPCSETSQIEDTPSSKPTLLANGGHGVEGS(0.001)DT(0.019)T(0.406)GS(0.287)PT(0.287)EFLEEK 114.57 2.13E-07 4083800000 547860 426730 127190 144520 340360 508450 607260 549720 325200 617720 TRUE FALSE FALSE 509457.8432 392914.3607 176441.3743 336449.8636 297668.8751 445722.6085 455317.1251 424560.7563 353388.5978 463038.8913 1.100248495 0.848555851 0.381050874 0.726612537 0.642859338 0.962602963 0.98332372 0.916900857 0.763194203 1 18.82077385 -6.269228995 24.79806333 0.92364312 0.725233363 0.210621981 0.178267523 892.8279718 2842288.796 0.065862586 0.059181829 5.38E-07 6.269228995 -0.198409757 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGS(ph)PTEFLEEK ddPTM_HeLa_A485_30min_R1 2 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 1 0 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDT(0.005)T(0.031)GS(0.85)PT(0.114)EFLEEK;KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDT(0.005)T(0.03)GS(0.859)PT(0.106)EFLEEK ; 191.18 8.00E-23 8134600000 3898710 2534700 1292613 4901010 3286680 3995020 6427610 6562380 3082390 7522870 TRUE FALSE FALSE 4765964.589 2831111.116 1770804.339 5168739.766 2959446.599 4204193.07 5054298.615 4952946.016 3700997.4 5647556.957 0.843898455 0.501298373 0.313552276 0.915216935 0.524022444 0.744426856 0.894953102 0.877006828 0.655327149 1 22.42919548 -6.501033037 4.828560531 0.84480355 0.61302961 0.280801316 0.178465077 0.268975053 16.62193936 0.066538609 0.055198261 3.15E-07 6.501033037 -0.23177394 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPT(ph)EFLEEK ddPTM_HeLa_A485_30min_R1 1 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 44 3 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 1 0 KKPCSETSQIEDTPSSKPTLLANGGHGVEGSDT(0.008)T(0.023)GS(0.442)PT(0.527)EFLEEK 115.33 1.95E-07 5314100000 257760 146010 75915 258170 202470 239810 357370 375260 179420 429250 TRUE FALSE FALSE 315097.8227 163084.5994 103999.1176 272273.1734 182311.3759 252366.0808 281014.9801 283226.8966 215427.9483 322245.8748 0.977818019 0.50608747 0.322732192 0.844923689 0.565752396 0.783147592 0.872051443 0.878915508 0.668520422 1 18.29780236 -6.42516678 4.369463021 0.843362062 0.629799362 0.226752955 0.184037924 0.358482838 11.69186522 0.067573776 0.05832524 3.76E-07 6.42516678 -0.2135627 KKPEDS(ph)PSDDDVLIVYELTPTAEQK ddPTM_HeLa_A485_30min_R1 1 KKPEDSPSDDDVLIVYELTPTAEQK 25 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 KKPEDS(0.5)PS(0.5)DDDVLIVYELTPTAEQK 138.62 5.91E-07 205790000 140340 74527 36918 296630 119500 131110 262100 231400 87230 406390 TRUE FALSE FALSE 171558.1488 83242.28435 50575.50449 312834.1458 107602.1604 137974.7169 206100.1938 174648.7872 104736.2609 305084.4521 0.562330029 0.272849972 0.165775424 1.025401798 0.35269631 0.452250896 0.675551286 0.572460465 0.343302519 1 18.21884913 -14 0.264896267 4.31542222 0.456364465 0.297111073 0.231123044 264.5133757 2.589275824 479.1776058 0.299690406 1.00E-14 14 -3.859057754 KKPEDS(ph)PSDDDVLIVYELTPTAEQK ddPTM_HeLa_A486_30min_R1 2 KKPEDSPSDDDVLIVYELTPTAEQK 25 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 KKPEDS(0.5)PS(0.5)DDDVLIVYELTPTAEQK;KKPEDS(0.984)PS(0.016)DDDVLIVYELTPTAEQK ; 168.26 2.65E-14 370630000 518410 432550 120880 510290 314500 631780 940050 815600 338960 1305140 TRUE FALSE FALSE 482072.1361 398273.1627 167687.9733 1187980.909 275052.4774 553837.4071 704839.5472 629905.6844 368341.3257 978324.449 0.492752825 0.407097219 0.171403233 1.214301564 0.281146482 0.566108112 0.720455824 0.643861742 0.376502219 1 19.89995347 -14 0.199168085 2.961957713 0.477601558 0.194513751 0.274780988 240.3188504 2.375654606 188.7764941 0.659810254 1.00E-14 14 -2.484356155 KKPEEEGSAHQDTAEKNAS(ph)SPEK ddPTM_HeLa_A485_30min_R1 1 KKPEEEGSAHQDTAEKNASSPEK 23 3 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KKPEEEGSAHQDT(0.003)AEKNAS(0.59)S(0.408)PEK 126.42 3.35E-06 324950000 207660 222850 63086 164360 305450 418260 930650 1226700 163220 366350 TRUE FALSE FALSE 253853.2506 248910.369 86424.13663 173338.5706 275038.3255 440159.4468 731809.0248 925849.9016 195976.7569 275025.6872 0.923016512 0.905044076 0.314240235 0.630263203 1.000045953 1.600430314 2.66087518 3.366412465 0.712576192 1 18.06920685 -6.321441952 2.651822713 2.126953841 0.701581896 0.358613404 0.736380683 0.269681343 3.7349614 0.279566369 0.248963231 4.77E-07 6.321441952 -1.425371945 KKPEEEGSAHQDTAEKNAS(ph)SPEK ddPTM_HeLa_A486_30min_R1 1 KKPEEEGSAHQDTAEKNASSPEK 23 3 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KKPEEEGSAHQDT(0.004)AEKNAS(0.561)S(0.435)PEK 102.6 0.000501 191680000 164620 99020 53391 51626 110920 118490 234270 226480 76033 232110 TRUE FALSE FALSE 153080.9881 91173.29458 74065.42506 120187.937 97007.37931 103871.9085 175653.1681 174915.448 82623.60166 173988.1452 0.879835738 0.524020154 0.425692365 0.690782334 0.557551661 0.597005666 1.009569749 1.00532969 0.474880639 1 17.40862949 -6.742743677 24.78007335 0.872889138 0.601032198 0.325047426 0.183073277 249.8931824 331218.8424 0.069087972 0.053416535 1.81E-07 6.742743677 -0.27185694 KKPNATRPVT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 KKPNATRPVTPPR 13 3 F8W0W8;P36873;P36873-2 F8W0W8 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit 1 0 KKPNATRPVT(1)PPR 105.31 0.00053873 2931500000 4235700 3968500 2821600 4578100 4543100 5271800 6554600 6349700 4063900 6745800 TRUE FALSE FALSE 5177916.852 4432581.554 3865427.257 4828190.011 4090773.012 5547823.296 5154156.164 4792426.119 4879487.454 5064196.207 1.022455813 0.8752784 0.763285445 0.953397106 0.807783278 1.095499279 1.017763916 0.946335 0.963526541 1 22.27190187 -6.255598087 24.99405674 1.00209207 0.881031173 0.382825642 0.076204472 533.6285042 2283320.805 0.025825386 0.025172677 5.55E-07 6.255598087 -0.121060897 KKPNATRPVT(ph)PPR ddPTM_HeLa_A486_30min_R1 2 KKPNATRPVTPPR 13 3 F8W0W8;P36873;P36873-2 F8W0W8 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit 1 0 KKPNAT(0.001)RPVT(0.999)PPR;KKPNATRPVT(1)PPR ; 94.544 0.0015742 5431500000 10140600 8911400 4766800 3584800 8157300 9997900 10464000 10200000 7205200 12248600 TRUE FALSE FALSE 9429796.306 8205228.209 6612632.619 8345595.566 7134135.37 8764460.749 7845796.523 7877682.664 7829752.537 9181470.835 1.027046371 0.893672523 0.720214957 0.908960636 0.777014435 0.954581342 0.854525017 0.857997897 0.852777586 1 23.13029386 -10.12289336 5.293233726 1.000003008 0.867862915 0.181987613 0.081099179 2.83E-06 4.68E-07 0.077061661 0.018689773 7.54E-11 10.12289336 -0.132140093 KKPS(ph)MPNVSNDLSQK ddPTM_HeLa_A485_30min_R1 1 KKPSMPNVSNDLSQK 15 2 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 KKPS(0.5)MPNVS(0.5)NDLSQK 64.52 0.02088 31727000 15851 78918 82529 5341.6 48965 81222 24578 84814 63079 5680.4 TRUE FALSE FALSE 19377.00026 88146.7736 113059.9114 5633.398082 44089.87267 85474.65833 19326.70952 64013.23352 75738.37671 4264.38082 4.54391882 20.67047417 26.51262075 1.321035414 10.33910303 20.04386145 4.532125608 15.01114376 17.76069725 1 12.05812056 -5.262578041 24.99999936 10 17.58515105 0.148003445 7.948892714 194.0995047 4261607.963 2.21694424 3.508752417 5.46E-06 5.262578041 7.585151049 KKPS(ph)SEERETEISLK ddPTM_HeLa_A485_30min_R1 1 KKPSSEERETEISLK 15 3 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 KKPS(0.5)S(0.5)EERETEISLK 83.423 0.016066 516440000 414460 230150 197720 632260 488810 417290 745350 656550 329150 958120 TRUE FALSE FALSE 506655.1971 257064.0405 270864.8558 666798.7628 440142.3601 439138.6591 586099.8836 495530.0831 395207.3859 719278.3169 0.704393814 0.357391617 0.376578648 0.927038599 0.611922186 0.610526758 0.814844365 0.688926764 0.549449881 1 19.45619059 -14 0.088455192 2.131542259 0.327628904 0.321909938 0.165186847 268.2510895 1.650646718 58.43900999 4.27364099 1.00E-14 14 -1.803913355 KKPS(ph)SEERETEISLK ddPTM_HeLa_A486_30min_R1 1 KKPSSEERETEISLK 15 3 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 KKPS(0.5)S(0.5)EERETEISLK 137.12 4.23E-05 572160000 646400 674390 347040 352990 766950 959610 1186100 1220200 596650 930710 TRUE FALSE FALSE 601090.698 620948.8803 481423.1821 821778.5591 670751.9795 841223.0748 889325.2347 942387.0968 648368.1024 697654.1581 0.861588354 0.890052576 0.690059934 1.177916808 0.961439091 1.20578809 1.274736522 1.350794066 0.929354602 1 19.41215251 -5.272555435 24.68098477 1.145535235 0.821515516 0.521364436 0.137438297 460.1300495 1021626.19 0.03931992 0.058952602 5.34E-06 5.272555435 -0.324019719 KKPSS(ph)EERETEISLK ddPTM_HeLa_A485_30min_R1 1 KKPSSEERETEISLK 15 3 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 KKPS(0.091)S(0.909)EERETEISLK 186.11 3.80E-17 426510000 458280 197280 189930 639450 554240 522030 844780 832300 407690 1096800 TRUE FALSE FALSE 560222.805 220350.1799 260193.0106 674381.5343 499057.9195 549362.6836 664285.8518 628177.12 489509.6434 823387.9451 0.680387426 0.267614047 0.316002939 0.819032557 0.606103019 0.667197871 0.806771408 0.762917558 0.594506692 1 19.6512128 -5.261946385 24.99992351 0.733857386 0.40596272 0.498242702 0.150656233 36.64261272 1806846.219 0.040348211 0.064211624 5.47E-06 5.261946385 -0.327894666 KKQPAS(ph)PDGRT(ph)SPINEDIR ddPTM_HeLa_A485_30min_R1 3 KKQPASPDGRTSPINEDIR 19 3 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 2 0 KKQPAS(1)PDGRT(0.533)S(0.467)PINEDIR;KKQPAS(1)PDGRT(0.539)S(0.461)PINEDIR;KKQPAS(1)PDGRT(0.542)S(0.458)PINEDIR ;; 112.86 0.0003145 4278300000 2166330 2763780 1828590 2310180 3236200 3807990 5148700 6642600 2493510 3206890 TRUE FALSE FALSE 2648222.635 3086980.029 2505061.535 2436379.284 2913992.565 4007370.468 4048638.184 5013491.935 2993934.585 2407471.341 1.100001728 1.282249959 1.040536388 1.012007596 1.210395536 1.664555835 1.681697354 2.082472114 1.24360134 1 21.19908719 -6.180745485 4.429110881 1.6114592 1.11689941 0.329796969 0.280330722 0.222601604 8.027335752 0.091644579 0.091014655 6.60E-07 6.180745485 -0.49455979 KKQPAS(ph)PDGRT(ph)SPINEDIR ddPTM_HeLa_A486_30min_R1 2 KKQPASPDGRTSPINEDIR 19 3 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 2 0 KKQPAS(1)PDGRT(0.798)S(0.202)PINEDIR;KKQPAS(1)PDGRT(0.713)S(0.287)PINEDIR ; 114.74 0.00026419 2758900000 2935200 2262650 1290640 1197180 2669500 2327980 3451800 3467900 1710190 3454500 TRUE FALSE FALSE 2729457.637 2083349.374 1790410.373 2787095.542 2334666.418 2040777.497 2588123.131 2678334.874 1858430.646 2589470.715 1.054060052 0.804546412 0.691419433 1.076318618 0.901599854 0.788106035 0.999479591 1.034317499 0.717687455 1 21.30422581 -5.26391882 24.9999116 0.928167915 0.845462419 0.071736348 0.133042525 624.4052204 6295826.653 0.036926095 0.05779728 5.45E-06 5.26391882 -0.082705496 KKRDS(ph)EEEFGSER ddPTM_HeLa_A485_30min_R1 4 KKRDSEEEFGSER 13 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KKRDS(1)EEEFGSER;KKRDS(1)EEEFGSER;KKRDS(1)EEEFGSER;KKRDS(1)EEEFGSER ;;; 158.17 6.41E-08 1110160000 580430 531990 233434 575420 379734 622920 844390 874120 325842 777470 TRUE FALSE FALSE 709544.651 594201.6028 319790.9506 606853.7376 341926.3496 655535.128 663979.1785 659740.6994 391235.5006 583661.0373 1.215679317 1.018059396 0.547905257 1.039736592 0.58583035 1.123143548 1.137610935 1.130349051 0.670312862 1 19.15477124 KKRDS(ph)EEEFGSER ddPTM_HeLa_A486_30min_R1 3 KKRDSEEEFGSER 13 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KKRDS(1)EEEFGSER;KKRDS(1)EEEFGSER;KKRDS(1)EEEFGSER ;; 154.74 1.89E-07 642550000 605340 379870 138605 227395 264733 431200 549070 487270 269047 874980 TRUE FALSE FALSE 562908.792 349767.7177 192276.568 529387.0519 231527.7186 378002.9281 411686.8785 376329.258 292368.2106 655879.3128 0.858250567 0.533280606 0.293158458 0.80714095 0.353003539 0.576330006 0.627686939 0.57377821 0.445765257 1 19.32307085 -10.28607499 3.553963436 1.00127503 0.557928303 0.377309028 0.168238463 217404986.6 355081506.6 3031234.105 0.041052739 5.18E-11 10.28607499 -0.443346727 KKS(ph)MEELTVIQCTSQELPAQTGLLSQTGDVPLPAGR ddPTM_HeLa_A485_30min_R1 1 KKSMEELTVIQCTSQELPAQTGLLSQTGDVPLPAGR 36 2 A0A096LNZ0;A0A096LP25;Q6ZSR9 A0A096LNZ0 AAK1 Uncharacterized protein FLJ45252 1 0 KKS(0.979)MEELT(0.021)VIQCTSQELPAQTGLLSQTGDVPLPAGR 179.93 3.20E-21 332970000 200860 140270 103520 294580 241480 210250 373920 372080 176090 436100 TRUE FALSE FALSE 245540.614 156673.3563 141816.3558 310672.1595 217437.4033 221258.3649 294028.9374 280826.7966 211429.6478 327388.2958 0.749998143 0.478555154 0.433174789 0.948940947 0.664157534 0.675828573 0.898104609 0.857778974 0.645806984 1 18.32064322 -4.474628106 0.092951739 1.219723326 1.81E-08 0.320331071 0.150043517 73.05529296 1.17594647 3.938141993 13.33608762 3.35E-05 4.474628106 -1.219723307 KKS(ph)MEELTVIQCTSQELPAQTGLLSQTGDVPLPAGR ddPTM_HeLa_A486_30min_R1 1 KKSMEELTVIQCTSQELPAQTGLLSQTGDVPLPAGR 36 2 A0A096LNZ0;A0A096LP25;Q6ZSR9 A0A096LNZ0 AAK1 Uncharacterized protein FLJ45252 1 0 KKS(0.872)MEELT(0.123)VIQCT(0.003)S(0.003)QELPAQTGLLSQTGDVPLPAGR 179.78 3.23E-21 438920000 122920 97224 44812 65419 96114 127530 173220 167020 78529 203460 TRUE FALSE FALSE 114303.9428 89519.61616 62164.40651 152298.7381 84058.48589 111796.6452 129878.5239 128993.192 85335.95695 152512.2917 0.749473642 0.586966566 0.407602599 0.998599761 0.551158762 0.733033672 0.851593812 0.845788825 0.559534946 1 17.218566 -14 0.105699887 1.926990593 0.520966205 0.228535357 0.166429427 256.6486716 1.81894337 52.24350365 2.344081548 1.00E-14 14 -1.406024387 KKS(ph)PIINESR ddPTM_HeLa_A485_30min_R1 5 KKSPIINESR 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 KKS(0.993)PIINES(0.007)R;KKS(1)PIINESR;KKS(1)PIINESR;KKS(0.987)PIINES(0.013)R;KKS(0.996)PIINES(0.004)R ;;;; 122.97 9.18E-05 27510970000 12235710 10787440 7108440 14977540 13194560 13956720 20612060 22458830 10163063 20725120 TRUE FALSE FALSE 14957501.48 12048937.27 9738147.763 15795725.09 11880863.28 14687472.28 16208125 16950766.73 12202696.52 15558729 0.961357542 0.774416552 0.625896097 1.015232355 0.763613999 0.944002063 1.04173837 1.089469887 0.78429906 1 23.89122088 -6.425821943 5.164007449 0.987309038 0.824958123 0.250990324 0.124775468 0.309357846 12.85799614 0.044672159 0.038879979 3.75E-07 6.425821943 -0.162350915 KKS(ph)PIINESR ddPTM_HeLa_A486_30min_R1 5 KKSPIINESR 10 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 KKS(0.998)PIINES(0.002)R;KKS(1)PIINESR;KKS(1)PIINESR;KKS(1)PIINESR;KKS(0.992)PIINES(0.008)R ;;;; 129.77 5.96E-05 48050730000 21577150 18163600 8200559 7822393 15450680 19693580 24459650 23083230 13118830 26654680 TRUE FALSE FALSE 20064703.21 16724250.19 11376035.06 18210926.23 13512711.64 17263986.33 18339586.86 17827682.43 14255980.75 19980174.64 1.004230622 0.837042243 0.569366148 0.911449803 0.676305983 0.864055828 0.917889218 0.892268599 0.713506314 1 24.25206586 -6.489612331 24.89604523 0.87465762 0.792670213 0.081834797 0.129653456 1640.442205 1227681.843 0.045427151 0.040035329 3.24E-07 6.489612331 -0.081987406 KKS(ph)PNELVDDLFK ddPTM_HeLa_A485_30min_R1 2 KKSPNELVDDLFK 13 2 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 KKS(1)PNELVDDLFK;KKS(1)PNELVDDLFK ; 208.2 4.11E-22 5366600000 1912160 1087010 589330 3222200 1532950 1878120 3599900 3300500 1253230 4538600 TRUE FALSE FALSE 2337513.395 1214126.364 807347.6911 3398220.627 1380324.115 1976455.459 2830751.957 2491047.2 1504741.766 3407210.547 0.686049002 0.356340281 0.236952686 0.997361502 0.405118526 0.580080225 0.830812161 0.731110439 0.441634512 1 21.70015967 -14 0.106580578 2.289850852 0.34025014 0.244855117 0.220413216 246.2253157 1.756009854 70.12043792 3.069216291 1.00E-14 14 -1.949600712 KKS(ph)PNELVDDLFK ddPTM_HeLa_A486_30min_R1 2 KKSPNELVDDLFK 13 2 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 KKS(1)PNELVDDLFK;KKS(1)PNELVDDLFK ; 158.17 4.94E-09 7278500000 910300 673410 262245 785310 531100 1059880 1462880 1297910 599630 2024980 TRUE FALSE FALSE 846492.6708 620046.5391 363793.2872 1828241.367 464484.4857 929122.7817 1096851.951 1002404.226 651606.4112 1517911.828 0.557669198 0.408486532 0.239666943 1.204445037 0.306002284 0.612105898 0.72260584 0.660383698 0.42927817 1 20.53365656 -14 0.203982446 2.898972194 0.513403232 0.193541452 0.258110004 244.3441288 2.425863776 190.4151591 0.585630274 1.00E-14 14 -2.385568962 KKS(ph)RS(ph)QSPK ddPTM_HeLa_A486_30min_R1 1 KKSRSQSPK 9 3 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 KKS(0.998)RS(0.579)QS(0.423)PK 47.288 0.034337 137140000 148630 75199 45291 71455 101150 87248 136350 130510 57266 152920 TRUE FALSE FALSE 138211.8045 69239.95737 62828.88814 166350.8511 88462.82381 76484.22883 102233.7878 100795.722 62229.86299 114627.8367 1.20574381 0.604041386 0.548111959 1.451225601 0.771739452 0.667239573 0.89187575 0.87933023 0.542886133 1 16.80659791 KKS(ph)SSEAKPTSLGLAGGHK ddPTM_HeLa_A485_30min_R1 1 KKSSSEAKPTSLGLAGGHK 19 3 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 KKS(0.836)S(0.075)S(0.075)EAKPT(0.012)S(0.001)LGLAGGHK 158.8 1.68E-09 907260000 1052100 504140 281760 1151600 646350 806920 1328800 838550 494950 1554000 TRUE FALSE FALSE 1286136.015 563094.7876 385994.749 1214508.992 581997.1245 849169.0835 1044891.025 632894.2977 594281.925 1166616.399 1.102449799 0.482673472 0.330866898 1.041052563 0.498876173 0.727890577 0.895659469 0.542504201 0.509406456 1 20.15389883 -5.251420209 24.99070617 0.721295788 0.623064464 0.027637364 0.259152467 3291.103508 8208949.895 0.069649237 0.11884762 5.61E-06 5.251420209 -0.098231324 KKS(ph)SSEAKPTSLGLAGGHK ddPTM_HeLa_A486_30min_R1 1 KKSSSEAKPTSLGLAGGHK 19 3 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 KKS(0.932)S(0.055)S(0.014)EAKPTSLGLAGGHK 95.926 0.00038419 942310000 1058300 668460 182920 122030 501650 862740 1016900 860150 473170 1085200 TRUE FALSE FALSE 984118.6351 615488.7951 253751.5228 284092.0071 438728.3793 756303.9105 762460.8643 664312.6219 514184.7566 813458.8565 1.209795218 0.756631746 0.311941435 0.349239553 0.539336902 0.929738369 0.937307226 0.816651779 0.63209682 1 19.63370985 -6.260583455 24.99426255 0.856333852 0.606591513 0.169404941 0.250675183 148.5864525 4338991.232 0.09256248 0.08746396 5.49E-07 6.260583455 -0.24974234 KKT(ph)LCGTPNYIAPEVLSK ddPTM_HeLa_A485_30min_R1 2 KKTLCGTPNYIAPEVLSK 18 2 P53350 P53350 PLK1 Serine/threonine-protein kinase PLK1 1 0 KKT(0.479)LCGT(0.479)PNY(0.042)IAPEVLSK;KKT(0.484)LCGT(0.484)PNY(0.033)IAPEVLSK ; 126.63 1.11E-05 728670000 1675230 807320 542570 1818480 1582380 1371870 2445900 2287200 1002150 2216900 TRUE FALSE FALSE 2047879.134 901729.0512 743289.2212 1917818.958 1424832.691 1443698.992 1923313.484 1726260.614 1203272.313 1664267.629 1.230498688 0.541817335 0.446616402 1.152350093 0.85613195 0.867468048 1.155651561 1.037249409 0.723004096 1 20.66645602 -5.274721005 24.99772313 0.970502759 0.719861436 0.173971087 0.229071863 1232.487342 2319696.825 0.064460098 0.096233531 5.31E-06 5.274721005 -0.250641323 KKT(ph)LCGTPNYIAPEVLSK ddPTM_HeLa_A486_30min_R1 2 KKTLCGTPNYIAPEVLSK 18 2 P53350 P53350 PLK1 Serine/threonine-protein kinase PLK1 1 0 KKT(0.969)LCGT(0.031)PNYIAPEVLSK;KKT(0.5)LCGT(0.5)PNYIAPEVLSK ; 138.08 2.55E-06 539410000 1089560 1149200 530320 645870 1001900 1666720 2074710 1829490 905470 1651680 TRUE FALSE FALSE 1013187.47 1058133.207 735674.1065 1503618 876232.3597 1461097.032 1555595.614 1412955.064 983956.8686 1238088.577 0.818348129 0.854650649 0.594201513 1.214467226 0.707729944 1.180123183 1.256449371 1.141239076 0.794738669 1 20.2396831 -5.262138645 24.99991813 1.048740998 0.765625156 0.349303657 0.178800979 72.94647833 2607998.509 0.050228438 0.079817193 5.47E-06 5.262138645 -0.283115842 KKT(ph)QEKDDDMLFAL ddPTM_HeLa_A486_30min_R1 1 KKTQEKDDDMLFAL 14 3 O60784-4;O60784;O60784-2;O60784-3 O60784-4 TOM1 Target of Myb protein 1 1 0 KKT(1)QEKDDDMLFAL 70.235 0.013009 83775000 211650 147370 45882 170240 104400 211630 294410 253560 99984 475370 TRUE FALSE FALSE 196814.428 135691.8645 63648.73916 396327.3235 91305.17851 185521.2423 220745.504 195829.9232 108650.6936 356334.2579 0.552330919 0.38079938 0.178620881 1.112234692 0.256234635 0.520638244 0.619489985 0.54956805 0.304912287 1 18.44287166 -10.73222437 2.852768327 1.085799572 0.501237443 0.271606463 0.246937403 71489834.81 63056642.81 43664793.5 0.05932129 1.85E-11 10.73222437 -0.584562129 KKTEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KKTEFLDLDNSPLSPPSPR 19 2 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 KKTEFLDLDNSPLSPPS(1)PR 160.92 1.20E-12 5083000000 975810 1022200 641390 410460 1109300 1078200 1281000 1226400 835640 1345800 TRUE FALSE FALSE 907410.7581 941197.1492 889753.385 955571.6235 970161.2502 945182.6463 960480.251 947175.4921 908073.948 1008802.92 0.899492596 0.932984164 0.881989303 0.947233205 0.961695521 0.936934883 0.952098999 0.938910339 0.900149999 1 19.94421293 -5.288521874 24.05404682 0.945862864 0.907638236 0.363152462 0.026089496 519.664162 461552.3389 0.007052954 0.010464658 5.15E-06 5.288521874 -0.038224629 KKVQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_A485_30min_R1 1 KKVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 31 3 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KKVQIPVSRPDPEPVS(1)DNEEDS(0.672)Y(0.328)DEEIHDPR 131.11 1.03E-06 1028900000 750830 592890 347160 809320 765910 890450 1449800 1583500 590060 1180100 TRUE FALSE FALSE 917849.5432 662223.328 475588.9305 853531.1023 689653.3111 937072.5851 1140038.386 1195144.142 708479.6296 885922.7881 1.036037853 0.747495535 0.536828871 0.963437349 0.778457582 1.057736179 1.286837184 1.349038718 0.7997081 1 19.75682144 -6.353921192 3.973862732 1.141629026 0.801231329 0.359310164 0.189045027 0.238819329 6.872943472 0.069469351 0.06100349 4.43E-07 6.353921192 -0.340397697 KKVQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_A486_30min_R1 1 KKVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 31 3 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KKVQIPVSRPDPEPVS(1)DNEEDS(0.692)Y(0.308)DEEIHDPR 168.32 8.72E-15 867250000 781990 448060 207940 324320 520300 620650 893410 824500 380750 1032000 TRUE FALSE FALSE 727176.5392 412554.0938 288459.9368 755033.3502 455039.1224 544080.5133 669869.3685 636779.3487 413753.7166 773580.4828 0.940014071 0.533304683 0.372889367 0.976024301 0.588224668 0.703327612 0.865933647 0.823158499 0.534855423 1 19.56119187 -6.260106823 0.944630762 0.791943115 0.652948882 0.060817906 0.200879857 1.735657399 3.303032193 0.120183552 0.110333672 5.49E-07 6.260106823 -0.138994232 KKVQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_HeLa_A485_30min_R1 2 KKVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 31 3 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KKVQIPVS(0.01)RPDPEPVS(0.889)DNEEDS(0.5)Y(0.601)DEEIHDPR;KKVQIPVS(0.006)RPDPEPVS(0.909)DNEEDS(0.481)Y(0.604)DEEIHDPR ; 52.106 0.0094005 254660000 166484 139398 79079 211440 189319 225600 326400 377650 134164 299570 TRUE FALSE FALSE 203517.7914 155699.3835 108333.6129 222990.4318 170469.7356 237412.0672 256661.9736 285030.7454 161089.4842 224892.7122 0.904955032 0.692327386 0.481712421 0.991541387 0.758004712 1.055668122 1.141264077 1.267407657 0.716294817 1 17.77887738 -6.006352151 1.545266475 1.060110237 0.721230935 0.337009728 0.183489776 0.408810955 1.990685963 0.07329196 0.08117855 9.85E-07 6.006352151 -0.338879301 KKYNDDS(ph)DDSYFTSSSR ddPTM_HeLa_A486_30min_R1 1 KKYNDDSDDSYFTSSSR 17 2 H0Y6A0 H0Y6A0 ARFGAP3 1 0 KKYNDDS(1)DDSYFTSSSR 136.62 2.54E-06 73082000 95905 83086 35894 50562 94936 93771 137230 139000 69757 165990 TRUE FALSE FALSE 89182.55475 76501.96277 49793.11807 117710.8913 83028.24164 82202.48741 102893.6025 107352.7343 75803.59293 124425.0236 0.716757387 0.614843868 0.400185723 0.94603873 0.667295366 0.660658805 0.826952646 0.862790549 0.609231091 1 16.92491713 -14 0.084422968 1.967011732 0.43160683 0.306090882 0.142379914 285.0053312 1.686717429 50.55217367 4.148367185 1.00E-14 14 -1.535404902 KKYPS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 KKYPSPQK 8 2 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 KKYPS(1)PQK;KKY(0.002)PS(0.998)PQK ; 110.66 0.00053461 2146200000 3815100 2669000 1264280 5587600 2962100 4116500 6771700 6713200 2794500 7379700 TRUE FALSE FALSE 4663755.833 2981116.333 1731989.783 5892836.439 2667182.923 4332033.575 5324870.975 5066777.174 3355330.517 5540076.603 0.841821543 0.538100201 0.312629212 1.06367418 0.481434304 0.781944707 0.961154756 0.914568071 0.605646954 1 22.40147449 -6.513189122 22.88140053 0.864412696 0.644538014 0.194797139 0.214454986 261.5971364 617752.0656 0.077810515 0.063973079 3.07E-07 6.513189122 -0.219874683 KKYPS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 KKYPSPQK 8 2 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 KKYPS(1)PQK;KKY(0.03)PS(0.97)PQK ; 85.813 0.0021144 1259310000 3552390 2598780 891280 1971380 1949000 3864590 5005790 4022290 2112570 6364300 TRUE FALSE FALSE 3303385.806 2392843.208 1236407.485 4589472.268 1704538.246 3387816.178 3753288.396 3106502.373 2295689.269 4770637.855 0.692441117 0.501577206 0.259170267 0.962024871 0.357297766 0.710139038 0.786747708 0.651171283 0.481212227 1 22.18575074 -14 0.20796371 2.854973978 0.544136782 0.262029009 0.198133165 198.4565097 1.975957919 153.8318254 0.425727966 1.00E-14 14 -2.310837196 KKYVDAETS(ph)L ddPTM_HeLa_A485_30min_R1 1 KKYVDAETSL 10 2 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-4;E9PFN4;A0A0A0MST8;Q9Y6M7-12;H7C3C4;Q9Y6M7-5 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 KKYVDAET(0.127)S(0.873)L 57.802 0.024259 240670000 463610 467770 197290 412890 293790 568820 691590 790990 327480 831960 TRUE FALSE FALSE 566738.4451 522471.6324 270275.7809 435445.1352 264539.236 598602.5356 543826.1467 596998.4623 393202.2322 624567.6831 0.907409173 0.836533248 0.432740579 0.697194471 0.423555754 0.958427008 0.870724121 0.955858714 0.629559042 1 19.2524984 -6.292148353 24.99605792 0.879393103 0.658820363 0.3004366 0.170424173 935.0536819 761098.7872 0.061013786 0.053815027 5.10E-07 6.292148353 -0.22057274 KLANDFPLDLS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 KLANDFPLDLSPVK 14 1 Q96JM2;Q96JM2-3 Q96JM2 ZNF462 Zinc finger protein 462 1 0 KLANDFPLDLS(1)PVK 123.41 1.90E-05 179190000 410840 313800 239040 487900 454820 425760 602610 532840 373970 670380 TRUE FALSE FALSE 502229.9406 350496.1803 327470.8433 514552.7416 409536.5238 448052.1352 473857.4506 402160.1545 449022.3487 503266.6034 0.997940132 0.696442359 0.65069059 1.022425764 0.813756607 0.890287836 0.941563472 0.799099626 0.892215668 1 18.94096334 -5.260548566 24.99995484 0.896781433 0.773166168 0.218764103 0.107867527 125.1687674 3512724.401 0.029270605 0.047168002 5.49E-06 5.260548566 -0.123615265 KLANDFPLDLS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 KLANDFPLDLSPVK 14 1 Q96JM2;Q96JM2-3 Q96JM2 ZNF462 Zinc finger protein 462 1 0 KLANDFPLDLS(1)PVK;KLANDFPLDLS(1)PVK ; 137.69 3.99E-06 305340000 773050 747200 451220 432770 816580 932520 1158160 1106830 632420 1132760 TRUE FALSE FALSE 718863.187 687989.1507 625944.4681 1007510.431 714156.9221 817475.1636 868376.1182 854828.9709 687238.6748 849109.523 0.84660832 0.810247833 0.737177539 1.186549442 0.841065732 0.962744077 1.022690354 1.006735819 0.809363994 1 19.69559113 -5.212707489 24.99992382 0.971695584 0.799234848 0.396795868 0.100251775 395.3275035 202806.1592 0.026162879 0.045315307 6.13E-06 5.212707489 -0.172460735 KLAT(ph)PPAAQESSR ddPTM_HeLa_A485_30min_R1 1 KLATPPAAQESSR 13 1 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 0 KLAT(1)PPAAQESSR 81.51 0.0038603 533040000 597720 614330 540520 756520 826590 742550 987440 990440 684510 1050600 TRUE FALSE FALSE 730680.7519 686170.5495 740480.8409 797846.772 744291.7973 781428.7698 776465.3774 747533.0371 821884.8783 788704.7549 0.926431275 0.86999672 0.938856824 1.011591178 0.943688741 0.990774767 0.984481674 0.947798314 1.042069131 1 19.58912581 -5.013009202 5.136026201 0.984168918 0.898716194 0.597728696 0.029966304 0.110488923 8.80844449 0.007602002 0.014807929 9.70E-06 5.013009202 -0.085452724 KLAT(ph)PPAAQESSR ddPTM_HeLa_A486_30min_R1 1 KLATPPAAQESSR 13 1 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 0 KLAT(1)PPAAQESSR 68.129 0.010454 677840000 690370 639140 401880 289810 662200 669450 851130 817740 518570 843460 TRUE FALSE FALSE 641978.6281 588492.2187 557498.6987 674692.3262 579140.7012 586860.0655 638168.2717 631558.4531 563520.0651 632252.126 1.015383898 0.930787252 0.881766428 1.067125437 0.915996447 0.928205761 1.009357257 0.998902854 0.891290107 1 19.27014046 -6.747229159 24.98579227 0.974796142 0.955157794 0.023015646 0.058127683 1190.261451 2092835.138 0.022180187 0.017091834 1.79E-07 6.747229159 -0.019638348 KLAVNMVPFPR ddPTM_HeLa_A485_30min_R1 7 KLAVNMVPFPR 11 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;A0A075B736;Q5SQY0;A0A0B4J269;Q13509;Q13509-2;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB1;TUBB4B;TUBB8;TUBB3;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;;;;; ;;;;;; 172.56 1.07E-06 1348785000 1497356 1963818 1815928 1419443 2198331 2197162 2472028 2956917 1548528 1896771 FALSE FALSE TRUE 1830437.676 2193469.432 2487715.334 1496983.577 1979457.447 2312202.005 1943859.023 2231728.469 1859303.366 1423940.897 1.28547307 1.540421682 1.747063617 1.051296146 1.390126129 1.623804759 1.365126198 1.567290099 1.30574476 1 20.44145784 -8.049080538 6.801373903 1.000014034 1.447280208 0.353678304 0.183613139 0.51142702 68.67170625 0.176623662 0.045753368 8.93E-09 8.049080538 0.447266174 KLAVNMVPFPR ddPTM_HeLa_A486_30min_R1 7 KLAVNMVPFPR 11 1 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;A0A075B736;Q5SQY0;A0A0B4J269;Q13509;Q13509-2;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB1;TUBB4B;TUBB8;TUBB3;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;;;;; ;;;;;; 190.86 5.89E-10 1426727000 2105771 2306727 2058503 797969 3106040 2265089 2614291 2523109 2071014 2578899 FALSE FALSE TRUE 1958167.327 2123933.552 2855610.49 1857712.159 2716451.501 1985645.349 1960167.741 1948652.16 2250531.161 1933125.905 1.01295385 1.098704201 1.477198398 0.960988705 1.405211887 1.027168145 1.013988657 1.008031683 1.164192749 1 20.88250417 KLCERPLASSPPRLY(ph)EDDET(ph)PGALSGLTK ddPTM_HeLa_A485_30min_R1 1 KLCERPLASSPPRLYEDDETPGALSGLTK 29 3 O75969 O75969 AKAP3 A-kinase anchor protein 3 2 0 KLCERPLAS(0.221)S(0.235)PPRLY(0.544)EDDET(0.375)PGALS(0.324)GLT(0.3)K 47.487 0.015492 2674700000 818890 321940 135610 1107000 385430 496000 1126800 889620 287590 1171500 TRUE FALSE FALSE 1001049.255 359588.0825 185777.7822 1167472.607 347055.2359 521969.793 886049.9749 671439.3001 345306.6751 879466.6099 1.138245891 0.408870648 0.211239154 1.327478035 0.394620139 0.593507232 1.007485634 0.763461958 0.392631933 1 19.74626928 KLCLNICVGESGDR ddPTM_HeLa_A485_30min_R1 1 KLCLNICVGESGDR 14 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 0 130.06 6.76E-05 0 15025 13838 15703 15952 22078 18199 22833 26375 15362 25382 FALSE FALSE TRUE 18367.25941 15456.23373 21512.19316 16823.41737 19879.8368 19151.8715 17954.54302 19906.4899 18445.01249 19054.73452 0.963921035 0.811149256 1.128968401 0.882899594 1.043301694 1.005097787 0.942261515 1.044700459 0.968001547 1 14.21786189 -4.743064376 24.99999697 0.998712679 0.887535211 0.292911044 0.070939613 286.9136713 390352.5748 0.016457578 0.043366581 1.81E-05 4.743064376 -0.111177468 KLCLNICVGESGDR ddPTM_HeLa_A486_30min_R1 1 KLCLNICVGESGDR 14 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 0 113.72 0.00058996 18716000 8099.6 8170.8 10293 3911.3 14139 8803.9 11039 10967 8945.3 9990.3 FALSE FALSE TRUE 7531.859866 7523.31605 14278.72526 9105.704066 12365.55478 7717.764329 8276.925441 8470.053508 9720.685806 7488.663854 1.005768187 1.004627287 1.906712003 1.215931739 1.651236458 1.030592971 1.105260645 1.131050034 1.298053431 1 12.87049262 -6.303917079 24.99939246 1.120698849 1.360005828 0.172663357 0.266594456 953.4504435 561131.3 0.096007106 0.084670905 4.97E-07 6.303917079 0.239306978 KLCQPQSTGSLLGDPAASS(ph)PPGER ddPTM_HeLa_A485_30min_R1 1 KLCQPQSTGSLLGDPAASSPPGER 24 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 KLCQPQSTGSLLGDPAAS(0.051)S(0.949)PPGER 121.66 1.94E-05 481800000 316260 471080 405260 263200 506400 393540 460620 556970 378600 354660 TRUE FALSE FALSE 386610.9459 526168.7081 555182.5383 277577.9495 455981.0379 414145.1459 362204.7741 420372.2342 454581.5473 266249.789 1.452061041 1.976222066 2.085194284 1.042547115 1.712606194 1.555475959 1.360394596 1.578864103 1.707349887 1 18.02242086 -11.93478461 0.16369906 1.38E-15 1.793679971 0.291084195 0.282484344 81.02089154 1.408804786 30.84076002 1.288259416 1.16E-12 11.93478461 1.793679971 KLCQPQSTGSLLGDPAASS(ph)PPGER ddPTM_HeLa_A486_30min_R1 2 KLCQPQSTGSLLGDPAASSPPGER 24 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 KLCQPQSTGSLLGDPAAS(0.092)S(0.908)PPGER;KLCQPQSTGSLLGDPAAS(0.027)S(0.973)PPGER ; 152.98 9.56E-10 833960000 684600 631930 548890 203429 795910 600210 710570 667130 519580 668630 TRUE FALSE FALSE 636613.0753 581853.5654 761434.9078 473592.9927 696079.5462 526162.1927 532777.8704 515239.0623 564617.6127 501200.6959 1.27017596 1.160919308 1.519221569 0.94491687 1.388823982 1.049803396 1.063003054 1.028009471 1.126529986 1 18.93502889 -6.292552411 23.93779247 1.055815573 1.248735047 0.337473674 0.142211664 488.0092072 375463.3506 0.047294301 0.04171537 5.10E-07 6.292552411 0.192919474 KLDDDSDS(ph)PSFFEEKPEEPVVLALDPK ddPTM_HeLa_A486_30min_R1 2 KLDDDSDSPSFFEEKPEEPVVLALDPK 27 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 KLDDDS(0.016)DS(0.964)PS(0.021)FFEEKPEEPVVLALDPK;KLDDDS(0.001)DS(0.986)PS(0.013)FFEEKPEEPVVLALDPK ; 219.76 1.64E-38 240390000 273090 230570 71517 241500 167690 388370 576780 471720 188361 761420 TRUE FALSE FALSE 253947.8012 212298.7935 99210.29769 562224.2047 146656.7566 340456.8581 432463.5434 364319.6536 204688.2831 570755.476 0.444932746 0.371961028 0.17382277 0.985052669 0.256951992 0.596502132 0.757703713 0.638311271 0.358626928 1 19.12251327 -14 0.101916345 2.448629862 0.213380253 0.299910546 0.229283426 232.939585 1.605586943 72.52581296 3.620192693 1.00E-14 14 -2.235249609 KLDDDSDSPS(ph)FFEEKPEEPVVLALDPK ddPTM_HeLa_A486_30min_R1 1 KLDDDSDSPSFFEEKPEEPVVLALDPK 27 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 KLDDDS(0.034)DS(0.16)PS(0.806)FFEEKPEEPVVLALDPK 60.104 0.010294 28725000 14416 16711 8595.4 20641 15800 30607 43854 33549 14500 51667 TRUE FALSE FALSE 13405.51284 15386.7595 11923.76907 48053.29114 13818.21667 26831.01953 32881.26536 25910.62507 15756.87167 38729.2469 0.346134095 0.397290439 0.307875056 1.240749433 0.356790224 0.692784437 0.849003479 0.669019595 0.406846839 1 15.24113583 KLDDQSEDEALELEGPLITPGSGSIYS(ph)SPGLYSK ddPTM_HeLa_A485_30min_R1 1 KLDDQSEDEALELEGPLITPGSGSIYSSPGLYSK 34 1 Q96AC1;Q96AC1-3;Q96AC1-2;G3V3J0 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 KLDDQSEDEALELEGPLITPGS(0.001)GS(0.001)IY(0.015)S(0.483)S(0.483)PGLY(0.015)S(0.003)K 92.817 0.00011259 26814000 10998 9277 5278.4 14185 11788 9560 13958 16265 9086.2 19576 TRUE FALSE FALSE 13444.46716 10361.86445 7231.099813 14959.89063 10614.34533 10060.54682 10975.75927 12275.98325 10909.717 14696.06347 0.914834587 0.705077552 0.492043317 1.017952233 0.722257722 0.684574263 0.746850291 0.835324594 0.742356415 1 13.84314214 -9.957663712 0.511006449 1.072774911 0.751430914 0.219343274 0.133814661 29.4179561 4.882748172 3.390352141 0.063474303 1.10E-10 9.957663712 -0.321343997 KLDDQSEDEALELEGPLITPGSGSIYSS(ph)PGLYSK ddPTM_HeLa_A486_30min_R1 1 KLDDQSEDEALELEGPLITPGSGSIYSSPGLYSK 34 1 Q96AC1;Q96AC1-3;Q96AC1-2;G3V3J0 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 KLDDQSEDEALELEGPLITPGSGSIY(0.037)S(0.308)S(0.655)PGLYSK 185.16 4.94E-21 91235000 138730 133820 66932 72506 127810 157560 197620 184160 100060 191510 TRUE FALSE FALSE 129005.7434 123215.6158 92849.8629 168797.6323 111778.878 138121.8492 148173.3858 142230.7882 108733.2814 143554.6495 0.898652491 0.858318531 0.646791053 1.175842321 0.77865035 0.962155177 1.032174063 0.990777998 0.757434759 1 17.13124053 -5.245194694 24.99609298 0.952285917 0.806960509 0.234377945 0.128464355 1288.754003 1983034.179 0.033853061 0.058406349 5.69E-06 5.245194694 -0.145325408 KLDEAVAEAHLGK ddPTM_HeLa_A485_30min_R1 2 KLDEAVAEAHLGK 13 1 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 0 0 ; ; 87.18 0.0048333 26553000 31469 33428 30679 40139 44737 45675 52431 60539 35100 59922 FALSE FALSE TRUE 38469.17048 37337.11382 42028.43876 42331.69193 40282.8272 48066.47237 41228.68853 45691.71533 42144.24804 44984.54818 0.855164096 0.82999864 0.934286115 0.941027389 0.895481423 1.068510729 0.916507783 1.015720223 0.936860539 1 15.45714191 -4.965003312 0.812070695 0.980570812 0.814625574 0.510741518 0.048318751 0.868422714 0.835920323 0.019615183 0.109241159 1.08E-05 4.965003312 -0.165945238 KLDEKENLSAK(ac)R ddPTM_HeLa_A485_30min_R1 1 KLDEKENLSAKR 12 3 U3KQ93;Q9UBT2-2;Q9UBT2 U3KQ93 UBA2 SUMO-activating enzyme subunit 2 0 1 KLDEKENLSAK(1)R 94.551 0.010332 20137000 21315 22449 21809 25321 34942 28596 45863 57589 25121 42257 FALSE TRUE FALSE 26056.44821 25074.21527 29877.05665 26704.22211 31463.05179 30093.24234 36063.99538 43465.20745 30162.55428 31723.10758 0.82137124 0.790408544 0.941807374 0.841790863 0.991802323 0.948622144 1.136836777 1.370143431 0.950807048 1 14.95324648 -6.327884807 1.348906664 1.140587983 0.850725131 0.47434975 0.117096508 0.341135752 1.255050977 0.056405528 0.048146846 4.70E-07 6.327884807 -0.289862852 KLDEKENLSAK(ac)R ddPTM_HeLa_A486_30min_R1 1 KLDEKENLSAKR 12 3 U3KQ93;Q9UBT2-2;Q9UBT2 U3KQ93 UBA2 SUMO-activating enzyme subunit 2 0 1 KLDEKENLSAK(1)R 169.04 3.10E-06 31056000 52126 47347 36019 27692 67516 58791 69954 80892 41143 79053 FALSE TRUE FALSE 48472.23658 43595.05129 49966.52142 64468.37548 59047.51372 51537.96416 52450.7693 62474.65746 44709.30837 59257.61425 0.817991699 0.735686913 0.843208456 1.087934037 0.996454455 0.869727288 0.885131303 1.054289111 0.754490523 1 15.85471292 -5.009521348 23.57606279 0.949262499 0.779991316 0.368347055 0.093189834 217.0589396 537475.8385 0.024355814 0.046522676 9.78E-06 5.009521348 -0.169271183 KLDELYGTWR ddPTM_HeLa_A485_30min_R1 1 KLDELYGTWR 10 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 89.301 0.0081598 498650000 350680 495190 410530 379580 557000 528770 633050 655870 436890 472250 FALSE FALSE TRUE 428687.5562 553098.1629 562402.1306 400315.4943 501543.1243 556455.5796 497793.696 495016.8541 524569.8156 354526.7661 1.209182485 1.560102694 1.586346037 1.129154503 1.414683381 1.56957283 1.404107513 1.396274982 1.479633883 1 18.43553503 -10.68848137 6.384872323 0.995684058 1.420806378 0.434358482 0.142535117 0.008767488 0.000427766 0.138175532 0.033306035 2.05E-11 10.68848137 0.425122321 KLDELYGTWR ddPTM_HeLa_A486_30min_R1 2 KLDELYGTWR 10 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ; ; 127.17 0.00024652 753980000 890680 873120 673570 348130 1085340 851360 952650 966210 714080 1028100 FALSE FALSE TRUE 828247.9315 803930.7914 934394.3428 810464.2335 949206.5368 746327.8592 714286.8939 746225.0752 775977.0293 770657.0682 1.07472956 1.043175784 1.212464508 1.05165354 1.231684722 0.968430564 0.926854399 0.968297192 1.00690315 1 19.5557295 -6.296182949 23.92883231 0.969162899 1.119356559 0.592726671 0.061507753 254.3069463 175147.0323 0.021063003 0.018577046 5.06E-07 6.296182949 0.15019366 KLDEMTDRDWR ddPTM_HeLa_A485_30min_R1 1 KLDEMTDRDWR 11 2 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 0 65.395 0.01573 70289000 82681 102850 93544 91376 120750 123360 145810 180870 101760 132230 FALSE FALSE TRUE 101073.1032 114877.4128 128149.8183 96367.6395 108727.706 129818.9388 114656.5023 136511.3489 122182.2986 99267.49451 1.018189325 1.157251056 1.290954495 0.970787466 1.095300194 1.307768867 1.15502565 1.375186808 1.230838949 1 16.59903376 -6.242902197 24.09181417 1.233542083 1.112024467 0.151428394 0.122221487 883.068274 1147678.361 0.039565015 0.039490662 5.72E-07 6.242902197 -0.121517616 KLDEMTDRDWR ddPTM_HeLa_A486_30min_R1 1 KLDEMTDRDWR 11 2 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 0 82.362 0.0046174 72271000 109260 105480 80511 44476 129770 107030 129070 129070 87086 128670 FALSE FALSE TRUE 101601.4382 97121.38065 111687.0154 103542.3757 113493.0365 93825.7268 96775.32084 99683.57858 94634.6846 96450.1945 1.053408329 1.006958889 1.157976051 1.073532057 1.176700961 0.9727894 1.003370925 1.033523873 0.981176711 1 16.55749653 -6.287450632 24.99051129 1.000592341 1.091344229 0.499105419 0.04779686 706.2539289 678536.8325 0.017176105 0.015153366 5.16E-07 6.287450632 0.090751889 KLDFNSPGGS(ph)SPVENSDCSTNSR ddPTM_HeLa_A485_30min_R1 1 KLDFNSPGGSSPVENSDCSTNSR 23 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 KLDFNSPGGS(0.568)S(0.432)PVENSDCSTNSR 94.006 0.00094849 178540000 79422 80504 77184 102470 109280 76105 105230 96231 85700 131690 TRUE FALSE FALSE 97089.1499 89918.24251 105737.5735 108067.6766 98399.69949 80089.74012 82746.75085 72630.19637 102899.2039 98862.10657 0.982066368 0.909531929 1.069546029 1.093115253 0.995322707 0.810115654 0.836991581 0.73466163 1.040835639 1 16.59313003 -6.175683084 6.358740672 0.865276766 1.013608555 0.291450502 0.095558968 0.275354059 16.86235492 0.031676861 0.031673916 6.67E-07 6.175683084 0.148331789 KLDFNSPGGSS(ph)PVENSDCSTNSR ddPTM_HeLa_A486_30min_R1 1 KLDFNSPGGSSPVENSDCSTNSR 23 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 KLDFNSPGGS(0.172)S(0.828)PVENSDCSTNSR 117.88 4.76E-05 295950000 127240 144890 116260 49711 145850 146420 149810 150400 127540 136380 TRUE FALSE FALSE 118321.1331 133408.3887 161278.9856 115729.7203 127556.133 128356.1891 112325.9535 116157.2032 138595.2699 102229.5603 1.15740626 1.304988384 1.577615956 1.132057302 1.247742166 1.25556824 1.098761974 1.1362389 1.355725971 1 16.6414529 KLDKENLS(ph)DER ddPTM_HeLa_A485_30min_R1 3 KLDKENLSDER 11 2 Q9BZI7-2;Q9BZI7 Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B 1 0 KLDKENLS(1)DER;KLDKENLS(1)DER;KLDKENLS(1)DER ;; 85.457 0.0016347 616800000 1049710 869990 549660 1472600 1181430 1126760 1703830 1711270 919440 2367840 TRUE FALSE FALSE 1283214.368 971727.7626 753002.1073 1553044.409 1063802.681 1185755.411 1339792.801 1291578.349 1103963.174 1777581.065 0.72188796 0.546657355 0.423610558 0.873684154 0.598455228 0.66706123 0.75371685 0.72659322 0.621048005 1 20.76148392 -14 0.172186465 2.340245917 0.580357325 0.443860198 0.115848039 123.4114068 1.16906964 56.50068048 0.40681926 1.00E-14 14 -1.759888592 KLDKENLS(ph)DER ddPTM_HeLa_A486_30min_R1 4 KLDKENLSDER 11 2 Q9BZI7-2;Q9BZI7 Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B 1 0 KLDKENLS(1)DER;KLDKENLS(1)DER;KLDKENLS(1)DER;KLDKENLS(1)DER ;;; 87.083 0.0014318 834470000 1437220 1323490 597390 766130 1278180 1577940 2016560 1878160 1043440 2347790 TRUE FALSE FALSE 1336478.3 1218611.832 828715.4067 1783589.358 1117858.746 1383269.806 1511995.359 1450543.968 1133886.219 1759888.102 0.759410952 0.69243711 0.470890965 1.013467479 0.635187399 0.785998726 0.859142895 0.824225112 0.644294497 1 20.74705227 -14 0.131859759 1.816890204 0.646076838 0.232284636 0.13933064 212.9356637 1.759528537 46.36890074 1.003488486 1.00E-14 14 -1.170813366 KLDLDNS(ph)GSLSVEEFMSLPELQQNPLVQR ddPTM_HeLa_A486_30min_R1 1 KLDLDNSGSLSVEEFMSLPELQQNPLVQR 29 1 F6U1T9;D3YTA9;H7BYZ3;P63098 F6U1T9 PPP3R1 Calcineurin subunit B type 1 1 0 KLDLDNS(0.333)GS(0.333)LS(0.333)VEEFMSLPELQQNPLVQR 78.228 0.0021267 37401000 12448 15831 11205 6321.3 14961 17187 20021 18599 11942 17923 TRUE FALSE FALSE 11575.45948 14576.4939 15543.87608 14716.30586 13084.45187 15066.64268 15011.53404 14364.41371 12977.14218 13434.96414 0.861592138 1.084967087 1.156971907 1.095373661 0.973910443 1.12145016 1.117348277 1.069181396 0.965923097 1 13.71370485 -4.259181834 24.61714879 1.071550438 0.861592047 0.48944496 0.062006118 140.7511897 1534679.106 0.015657384 0.100855782 5.51E-05 4.259181834 -0.209958391 KLDPAQS(ph)ASRENLLEEQGSIALR ddPTM_HeLa_A486_30min_R1 1 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 KLDPAQS(0.5)AS(0.5)RENLLEEQGSIALR 70.647 0.0035215 102340000 8698.8 10873 11155 4535.5 14453 10319 14795 10210 9932 11864 TRUE FALSE FALSE 8089.059041 10011.38388 15474.51474 10558.87321 12640.16997 9045.946696 11093.13451 7885.405883 10792.91376 8893.177178 0.909580331 1.125737594 1.740043455 1.187300444 1.421333424 1.017178283 1.247375858 0.886680398 1.213617309 1 13.11848321 -6.273906854 24.79474615 1.076788233 1.289170405 0.172179626 0.222563046 1283.248645 2552058.659 0.079520801 0.070646456 5.32E-07 6.273906854 0.212382173 KLDPAQSAS(ph)RENLLEEQGSIALR ddPTM_HeLa_A485_30min_R1 1 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 KLDPAQS(0.167)AS(0.833)RENLLEEQGSIALR 147.54 7.60E-10 515130000 40957 45948 56291 41882 81497 57805 77479 93260 64422 68199 TRUE FALSE FALSE 50067.74335 51321.21891 77115.38336 44169.90761 73382.87253 60831.58042 60924.9787 70387.83877 77350.90449 51198.24441 0.977919144 1.002401928 1.506211478 0.86272309 1.433308376 1.188157546 1.189981793 1.374809617 1.510811657 1 15.64380672 -3.307622253 0.684203376 1.274336384 7.94E-12 0.155464205 0.209058208 17.16334942 2.312013452 0.082510459 22.88808476 0.000492468 3.307622253 -1.274336384 KLDPAQSAS(ph)RENLLEEQGSIALR ddPTM_HeLa_A486_30min_R1 1 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 KLDPAQS(0.002)AS(0.998)RENLLEEQGSIALR 221.86 2.12E-38 302500000 32715 30647 24482 10563 45595 26476 46142 42178 35683 34334 TRUE FALSE FALSE 30421.84744 28218.42011 33962.08605 24591.19782 39876.04994 23209.66031 34596.78356 32574.99014 38776.03117 25736.54292 1.182048713 1.096433977 1.319605596 0.955497321 1.549394185 0.901817326 1.344266931 1.265709627 1.506652672 1 14.65153066 KLDPDSIPS(ph)PIQVIENDR ddPTM_HeLa_A485_30min_R1 1 KLDPDSIPSPIQVIENDR 18 1 O94855;O94855-2 O94855 SEC24D Protein transport protein Sec24D 1 0 KLDPDS(0.002)IPS(0.998)PIQVIENDR 52.061 0.023439 42086000 30212 38356 34868 32823 43047 36027 45886 46133 27265 47571 TRUE FALSE FALSE 36932.55517 42841.40055 47767.12418 34616.03738 38761.08953 37913.31801 36082.08125 34818.80942 32736.83541 35712.42518 1.03416542 1.19962171 1.337549157 0.969299542 1.085367049 1.06162821 1.010350909 0.974977455 0.916679146 1 15.12413849 -6.058990135 0.840893926 0.966248213 1.174825455 0.405559853 0.091190655 0.622097323 0.969554333 0.056154491 0.065767248 8.73E-07 6.058990135 0.208577242 KLDPDSIPS(ph)PIQVIENDR ddPTM_HeLa_A486_30min_R1 1 KLDPDSIPSPIQVIENDR 18 1 O94855;O94855-2 O94855 SEC24D Protein transport protein Sec24D 1 0 KLDPDS(0.001)IPS(0.999)PIQVIENDR 68.88 0.0041982 45605000 35965 39522 31268 18712 46814 39615 46152 47174 27909 50747 TRUE FALSE FALSE 33444.03922 36390.13278 43375.80699 43562.48165 40942.1516 34727.70408 34604.28145 36433.51 30328.17459 38039.62089 0.879189604 0.95663763 1.140279687 1.145187061 1.076302829 0.912935073 0.909690492 0.957777947 0.797278571 1 15.21521525 -6.269825633 23.87733364 0.912532152 1.046383046 0.32711989 0.088584043 422.4804603 1202881.321 0.033225614 0.029811325 5.37E-07 6.269825633 0.133850894 KLDPELHLDIK ddPTM_HeLa_A485_30min_R1 2 KLDPELHLDIK 11 1 Q12905;B4DY09 Q12905 ILF2 Interleukin enhancer-binding factor 2 0 0 ; ; 114.82 0.00088129 27311000 82242 62917 55974 115807 89728 83947 121253 107024 80787 164501 FALSE FALSE TRUE 100536.4492 70274.59584 76681.11187 122133.2432 80794.36527 88342.33511 95346.306 80776.19619 97000.20988 123493.9281 0.814100342 0.569053045 0.620930219 0.988981766 0.654237552 0.715357722 0.772072825 0.654090427 0.785465418 1 16.91408058 -14 0.373902784 4.707053249 0.719639988 0.33915913 0.113193035 655.5374899 5.019781313 1965.462819 0.078986362 1.00E-14 14 -3.987413261 KLDPGSEETQTLVR ddPTM_HeLa_A485_30min_R1 1 KLDPGSEETQTLVR 14 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 90.707 0.0060896 24879000 36381 40883 38009 39184 54118 43413 59067 63591 42523 55382 FALSE FALSE TRUE 44473.82794 45663.91122 52070.11079 41324.5227 48729.8219 45686.03755 46446.85292 47995.20754 51056.97606 41576.28663 1.069692162 1.09831625 1.252399264 0.993944531 1.172058061 1.098848436 1.117147698 1.15438899 1.228031173 1 15.34347329 -7.240781373 19.70792691 1.143407528 1.116260949 0 0.082006332 270.3537609 257922.0042 0.036870338 0.021206342 5.74E-08 7.240781373 -0.027146579 KLDVEEPDSANS(ph)SFYSTR ddPTM_HeLa_A486_30min_R1 1 KLDVEEPDSANSSFYSTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KLDVEEPDS(0.004)ANS(0.59)S(0.406)FYSTR 103.84 0.00010314 138140000 254620 288200 185330 109440 290770 347140 315530 318270 275930 406490 TRUE FALSE FALSE 236772.4529 265361.9824 257094.7393 254781.8508 254298.9153 304313.3963 236581.0567 245806.8688 299847.8346 304702.2582 0.777061694 0.870889451 0.84375725 0.836166599 0.834581656 0.998723797 0.776433552 0.806711674 0.984068304 1 18.21704067 -14 0.127972693 1.498290844 0.793305873 0.352667686 0.067740285 179.0292152 1.451511679 22.65648105 0.545971156 1.00E-14 14 -0.704984971 KLDVEEPDSANSS(ph)FYSTR ddPTM_HeLa_A485_30min_R1 3 KLDVEEPDSANSSFYSTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KLDVEEPDS(0.001)ANS(0.147)S(0.852)FYSTR;KLDVEEPDSANS(0.096)S(0.904)FYSTR;KLDVEEPDSANS(0.204)S(0.795)FYSTR ;; 169.88 1.66E-12 1309440000 2621590 2031000 1388230 2740350 2282820 2181130 3070140 2789150 1825230 4353880 TRUE FALSE FALSE 3204753.651 2268507.783 1901794.046 2890048.382 2055534.425 2295330.594 2414179.508 2105106.589 2191536.919 3268537.843 0.980485405 0.694043603 0.581848563 0.884202209 0.628885001 0.702249967 0.73861146 0.644051466 0.670494583 1 21.64021397 -9.87792775 4.184268847 1.000005455 0.719073796 0.339449064 0.114824983 125400168.9 294607255.8 11164.27769 0.027206472 1.32E-10 9.87792775 -0.280931659 KLDVEEPDSANSS(ph)FYSTR ddPTM_HeLa_A486_30min_R1 2 KLDVEEPDSANSSFYSTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KLDVEEPDSANS(0.125)S(0.874)FYSTR;KLDVEEPDSANS(0.233)S(0.766)FYS(0.001)T(0.001)R ; 158.05 3.71E-09 1078320000 1364580 1451520 962070 541000 1549290 1544770 1744690 1585480 1111370 1575440 TRUE FALSE FALSE 1268929.989 1336496.269 1334609.269 1259475.341 1354963.602 1354191.983 1308150.109 1224500.815 1207704.446 1180939.57 1.074508824 1.131722828 1.130124948 1.066502786 1.147360658 1.146707265 1.10771977 1.036886938 1.022664053 1 20.17150371 -7.327102439 2.845090935 1.014537758 1.117639064 0.739471121 0.026171076 0.145242212 2.27759798 0.017568638 0.007423881 4.71E-08 7.327102439 0.103101306 KLDYGQHVVAGT(ph)PGR ddPTM_HeLa_A485_30min_R1 2 KLDYGQHVVAGTPGR 15 1 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 0 KLDYGQHVVAGT(1)PGR;KLDYGQHVVAGT(1)PGR ; 148.2 5.52E-08 1110610000 795100 852710 766980 830750 1098010 797060 957170 979060 867740 1052300 TRUE FALSE FALSE 971967.2519 952427.0169 1050717.819 876131.7689 988688.2691 838792.8291 752662.8101 738943.9999 1041887.459 789980.9761 1.230367922 1.205632852 1.330054584 1.109054263 1.251534276 1.061788644 0.952760678 0.935394677 1.318876644 1 19.59145839 -6.305941985 6.076833856 1.042168631 1.223624412 0.371318945 0.111182309 0.226768607 22.00155677 0.038766458 0.03449543 4.94E-07 6.305941985 0.181455782 KLDYGQHVVAGT(ph)PGR ddPTM_HeLa_A486_30min_R1 2 KLDYGQHVVAGTPGR 15 1 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 0 KLDYGQHVVAGT(1)PGR;KLDYGQHVVAGT(1)PGR ; 159.75 8.48E-10 1007470000 1223390 1473170 1143630 445970 1523340 1381250 1506940 1487470 1154590 1318840 TRUE FALSE FALSE 1137636.679 1356430.644 1586474.163 1038240.698 1332268.493 1210845.419 1129887.673 1148805.552 1254670.791 988593.8798 1.150762413 1.372080762 1.604778459 1.050219629 1.347639835 1.224815815 1.142924002 1.16206015 1.269146832 1 19.91501845 -8.061528318 0.227394014 0.931876222 1.383443067 0.261362719 0.143730218 4.600603157 0.813229655 0.745312071 0.443252519 8.68E-09 8.061528318 0.451566845 KLDYGQHVVAGT(ph)PGRVFDMIR ddPTM_HeLa_A485_30min_R1 2 KLDYGQHVVAGTPGRVFDMIR 21 2 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 0 KLDYGQHVVAGT(1)PGRVFDMIR;KLDYGQHVVAGT(1)PGRVFDMIR ; 87.952 0.0012492 530210000 136307 236340 162362 118821 319380 265600 338440 553810 175044 169581 TRUE FALSE FALSE 166628.0219 263977.9071 222426.4602 125311.8904 287581.4058 279506.4053 266129.5292 417987.2292 210173.7252 127307.5776 1.308861774 2.073544341 1.747158059 0.984323893 2.258949634 2.19552057 2.090445315 3.283286329 1.650912924 1 16.95795877 -5.80846144 24.99956527 2.200330632 1.58302422 0.147943855 0.602672287 194.6025135 103460.4843 0.180609271 0.204792263 1.55E-06 5.80846144 -0.617306412 KLEAAEER ddPTM_HeLa_A485_30min_R1 5 KLEAAEER 8 1 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2;E5RIR6;E7EVN3;Q9H169-3;Q9H169;Q9H169-4;Q9H169-2 P16949 STMN1;STMN2;STMN4 Stathmin;Stathmin-2;Stathmin-4 0 0 ;;;; ;;;; 104.05 0.0037439 543007000 839726 1057094 907189 989603 1221380 1150625 1447230 1614553 1040504 1432635 FALSE FALSE TRUE 1026520.152 1180711.948 1242795.962 1043662.506 1099775.119 1210869.946 1138017.488 1218581.345 1249323.609 1075505.46 0.954453687 1.097820505 1.155545935 0.970392569 1.022565816 1.125861272 1.058123394 1.133031296 1.16161531 1 20.03658342 -6.260914811 24.99780141 1.101690532 1.045894141 0.136371258 0.068353805 106.8825334 5093447.23 0.023566232 0.022315852 5.48E-07 6.260914811 -0.05579639 KLEAAEER ddPTM_HeLa_A486_30min_R1 2 KLEAAEER 8 1 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2;E5RIR6;E7EVN3;Q9H169-3;Q9H169;Q9H169-4;Q9H169-2 P16949 STMN1;STMN2;STMN4 Stathmin;Stathmin-2;Stathmin-4 0 0 ; ; 108.43 0.00058975 0 883690 887530 654630 363900 1232430 904690 1038410 983430 778260 1046090 FALSE FALSE TRUE 821747.8944 817198.8905 908120.2676 847177.5905 1077847.137 793078.546 778588.8348 759524.4571 845720.2034 784142.2551 1.047957675 1.042156427 1.158106532 1.080387627 1.374555612 1.011396262 0.992917841 0.968605444 1.078529053 1 19.58075588 -6.465782947 24.99999452 1.006646712 1.138804721 0.336029727 0.091544824 338.6331105 148274.0112 0.032926119 0.029038019 3.42E-07 6.465782947 0.132158009 KLEDVKNS(ph)PTFK ddPTM_HeLa_A485_30min_R1 1 KLEDVKNSPTFK 12 2 H0YC42;P55327-2;P55327;P55327-3 H0YC42 TPD52 Tumor protein D52 1 0 KLEDVKNS(0.93)PT(0.07)FK 91.616 0.00089442 6265200000 8984800 4550200 2185100 12049000 5898800 6148400 11578000 10902000 4265300 13736000 TRUE FALSE FALSE 10983437.76 5082306.309 2993459.42 12707206.36 5311494.76 6470320.717 9104265.716 8228267.406 5121306.586 10311867.99 1.065125908 0.492859908 0.290292644 1.232289472 0.515085605 0.627463494 0.882891996 0.797941499 0.496641985 1 23.29780236 -10.91065269 3.514258527 1.142155753 0.707076534 0.09079464 0.273915047 388589793.6 13061694.41 446615854.6 0.064358623 1.23E-11 10.91065269 -0.43507922 KLEESASFESLSPSSRPAS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 KLEESASFESLSPSSRPASPTR 22 2 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 KLEESASFESLSPS(0.003)S(0.003)RPAS(0.993)PT(0.001)R;KLEESASFESLS(0.001)PS(0.087)S(0.061)RPAS(0.851)PT(0.001)R;KLEESASFESLSPS(0.098)S(0.019)RPAS(0.879)PT(0.004)R ;; 249.96 9.62E-48 988920000 433372 594880 527984 498660 660720 665430 716930 851710 592130 772610 TRUE FALSE FALSE 529774.1063 664446.0412 723307.2528 525900.5331 594936.3969 700270.8858 563752.0487 642826.7871 710965.0597 580012.5458 0.913383874 1.145571843 1.247054496 0.906705444 1.025730221 1.207337481 0.971965267 1.108298073 1.225775313 1 19.14572458 KLEEVLS(ph)TEGAEENGNSDK ddPTM_HeLa_A485_30min_R1 2 KLEEVLSTEGAEENGNSDK 19 1 O15355 O15355 PPM1G Protein phosphatase 1G 1 0 KLEEVLS(0.861)T(0.139)EGAEENGNSDK;KLEEVLS(0.808)T(0.192)EGAEENGNSDK ; 140.55 1.94E-07 265341000 176753 139637 112892 179353 178471 181793 217080 254720 137363 264350 TRUE FALSE FALSE 216071.0951 155966.3325 154655.4486 189150.6002 160701.8006 191311.4004 170699.0846 192249.5206 164930.4941 198452.41 1.088780404 0.785913018 0.779307485 0.95312826 0.809775001 0.964016513 0.86015123 0.968743693 0.831083352 1 17.59843356 -6.280305485 24.85705137 0.918804947 0.876058947 0.038728037 0.097640532 2928.381546 3858279.822 0.033226412 0.029351953 5.24E-07 6.280305485 -0.042745999 KLEEVLS(ph)TEGAEENGNSDK ddPTM_HeLa_A486_30min_R1 1 KLEEVLSTEGAEENGNSDK 19 1 O15355 O15355 PPM1G Protein phosphatase 1G 1 0 KLEEVLS(0.864)T(0.136)EGAEENGNSDK 100.88 0.00012382 162780000 95210 90592 68708 49776 95065 123140 120070 131730 80386 135100 TRUE FALSE FALSE 88536.27066 83413.15999 95313.57766 115881.0435 83141.06125 107948.2388 90027.21603 101737.9546 87353.9232 101270.0806 0.874258913 0.823670323 0.941182006 1.144277192 0.82098346 1.065944039 0.88898138 1.004620061 0.862583723 1 16.62784848 -4.864982656 5.603525102 0.969724719 0.85015586 0.211930018 0.091360452 0.280931165 12.81383143 0.02259741 0.048782142 1.36E-05 4.864982656 -0.119568859 KLEEVLS(ph)TEGAEENGNSDKK ddPTM_HeLa_A485_30min_R1 1 KLEEVLSTEGAEENGNSDKK 20 2 O15355 O15355 PPM1G Protein phosphatase 1G 1 0 KLEEVLS(0.976)T(0.024)EGAEENGNSDKK 103.29 3.78E-05 113690000 81632 49116 41815 118660 78575 86109 134830 128370 63659 183600 TRUE FALSE FALSE 99790.75677 54859.68895 57284.10857 125142.0953 70751.79711 90617.53409 106022.469 96887.05622 76434.77739 137831.8989 0.724003352 0.398018814 0.415608499 0.907932752 0.513319469 0.657449653 0.769215761 0.702936381 0.55455071 1 17.07255029 -14 0.145276094 2.286164259 0.504266318 0.35524476 0.151451508 151.7891586 1.327746096 56.60584873 0.846980493 1.00E-14 14 -1.781897941 KLEFSPQTLCCYGK(ac)QLCTIPR ddPTM_HeLa_A485_30min_R1 2 KLEFSPQTLCCYGKQLCTIPR 21 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 ; KLEFSPQTLCCYGK(1)QLCTIPR;KLEFSPQTLCCYGK(1)QLCTIPR 250.81 1.51E-51 121331000 52677 66926 67912 62253 81734 66995 80063 99538 69523 85114 FALSE TRUE FALSE 64394.81692 74752.41352 93035.47485 65653.72376 73596.27597 70502.75461 62956.886 75126.14943 83475.6284 63896.64621 1.007796508 1.169895729 1.456030643 1.027498745 1.15180186 1.103387404 0.985292495 1.175744799 1.30641643 1 15.96345259 KLEFSPQTLCCYGK(ac)QLCTIPR ddPTM_HeLa_A486_30min_R1 2 KLEFSPQTLCCYGKQLCTIPR 21 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 ; KLEFSPQTLCCYGK(1)QLCTIPR;KLEFSPQTLCCYGK(1)QLCTIPR 263.32 3.66E-52 128790000 73177 80144 69158 28857 93340 73405 92765 85941 70360 89462 FALSE TRUE FALSE 68047.67019 73793.09756 95937.82972 67180.55435 81632.42684 64349.03743 69554.21583 66374.11038 76458.86145 67060.1329 1.014726146 1.100401899 1.430623913 1.001795723 1.217301895 0.959572173 1.037191739 0.989770039 1.140153742 1 16.03316772 -6.259949448 24.9977761 1.025439053 1.157076126 0.218217738 0.120664199 217.6232388 3651256.519 0.040696014 0.038688904 5.50E-07 6.259949448 0.131637072 KLEKEEEEGISQES(ph)S(ph)EEEQ ddPTM_HeLa_A486_30min_R1 4 KLEKEEEEGISQESSEEEQ 19 2 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 KLEKEEEEGIS(0.015)QES(0.987)S(0.998)EEEQ;KLEKEEEEGIS(0.057)QES(0.958)S(0.985)EEEQ;KLEKEEEEGIS(0.017)QES(0.992)S(0.991)EEEQ;KLEKEEEEGIS(0.039)QES(0.971)S(0.99)EEEQ ;;; 103.14 0.00046165 3584700000 1590930 1540740 1708700 3677780 6485710 3914330 7872470 9200290 1753210 3166000 TRUE FALSE FALSE 1479414.023 1418646.151 2370354.401 8562057.705 5672211.775 3431419.763 5902694.74 7105584.808 1905179.654 2373212.993 0.623380214 0.597774475 0.998795476 3.607791518 2.390098062 1.445896248 2.487216595 2.994077999 0.802784942 1 21.17841016 -5.022911325 23.79519866 2.196441434 0.65750368 0.37077249 0.818045648 374.6463194 389100.8008 0.216208485 0.378461296 9.49E-06 5.022911325 -1.538937754 KLEKEEEEGISQES(ph)SEEEQ ddPTM_HeLa_A486_30min_R1 1 KLEKEEEEGISQESSEEEQ 19 2 P17096-2;P17096 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KLEKEEEEGIS(0.009)QES(0.813)S(0.177)EEEQ 78.837 0.002069 212660000 64867 68998 74098 144270 260190 173170 299710 364680 78795 134040 TRUE FALSE FALSE 60320.15827 63530.34719 102790.73 335867.851 227554.544 151806.0461 224719.388 281650.3249 85625.01404 100475.5115 0.600346864 0.632296828 1.023042614 3.34278319 2.264776168 1.51087607 2.236558785 2.803173834 0.852197841 1 16.6164844 -5.020591309 23.17785573 2.085089012 0.669158049 0.391377999 0.720133603 261.1110948 293912.2373 0.189577995 0.334240509 9.54E-06 5.020591309 -1.415930963 KLELSDNR ddPTM_HeLa_A485_30min_R1 1 KLELSDNR 8 1 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 77.677 0.0031904 0 260070 315720 282680 282790 379000 374260 403510 463460 319060 387320 FALSE FALSE TRUE 317921.6743 352640.7076 387255.0953 298238.1016 341265.4293 393855.6749 317296.7921 349795.7083 383092.4154 290768.2521 1.0933851 1.212789584 1.331834176 1.025690045 1.173668125 1.354534658 1.091236027 1.203005162 1.317518032 1 18.14951023 -10.22209421 4.983108525 0.999973401 1.200110015 0.248146588 0.104650501 3.04E-05 4.74E-06 0.099484429 0.024125314 6.00E-11 10.22209421 0.200136614 KLENCNYAVELGKHPAK ddPTM_HeLa_A485_30min_R1 2 KLENCNYAVELGKHPAK 17 2 P13797-3;P13797;A0A0A0MSQ0;P13797-2 P13797-3 PLS3 Plastin-3 0 0 ; ; 107.57 0.00017072 21222500 23038.4 25075.4 19525.8 23250.3 34255 30163 41871 49750 25527 35246 FALSE FALSE TRUE 28163.2126 28007.7499 26749.20596 24520.40502 30844.45192 31742.28804 32924.9188 37548.7345 30650.03475 26459.82085 1.064376541 1.058501116 1.010936775 0.926703365 1.165709023 1.199641079 1.244336421 1.419084986 1.158361386 1 14.69151567 -5.937692639 5.11003687 1.228405972 1.018460031 0.421935035 0.103446975 0.177039095 9.204185721 0.032467716 0.036754723 1.15E-06 5.937692639 -0.209945941 KLENS(ph)PLGEALR ddPTM_HeLa_A485_30min_R1 6 KLENSPLGEALR 12 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR ;;;;; 214.63 1.54E-18 4554080000 4144770 4435810 3440400 5466280 4981630 5011000 6737320 6999270 4241140 8688940 TRUE FALSE FALSE 5066759.787 4954539.393 4713147.127 5764889.035 4485641.426 5273368.212 5297836.543 5282688.058 5092297.896 6522947.166 0.776759287 0.759555346 0.72254872 0.883785946 0.687670973 0.808433378 0.812184494 0.809862156 0.780674405 1 22.63709251 -14 0.250696517 2.329976141 0.763273397 0.636670497 0.049826296 111.7600896 1.108690753 76.11219 0.068724103 1.00E-14 14 -1.566702745 KLENS(ph)PLGEALR ddPTM_HeLa_A486_30min_R1 6 KLENSPLGEALR 12 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR;KLENS(1)PLGEALR ;;;;; 233.14 1.97E-24 4321560000 6012240 6722230 4760830 2922530 7618870 7412020 8397210 8260010 6994150 9194020 TRUE FALSE FALSE 5590813.023 6189536.013 6604350.875 6803797.536 6663240.281 6497600.332 6296139.241 6379386.038 7600408.553 6891777.549 0.811229466 0.89810444 0.958294261 0.987234061 0.96683914 0.94280471 0.913572616 0.925651763 1.102822675 1 22.7164447 -4.412974837 1.835410151 0.969976752 0.786326401 0.518320448 0.049811525 0.518155257 2.288380918 0.013816165 0.147901423 3.86E-05 4.412974837 -0.183650352 KLEPGGFGEKPVRPGGGDT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KLEPGGFGEKPVRPGGGDTSPR 22 3 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 KLEPGGFGEKPVRPGGGDT(0.833)S(0.167)PR 117.73 7.46E-05 4288500000 3977000 3796600 2587200 4112400 4464700 4682400 5780700 6103700 3504700 5755600 TRUE FALSE FALSE 4861669.93 4240579.344 3544312.942 4337049.999 4020178.791 4927563.224 4545606.221 4606758.005 4208061.143 4320834.844 1.125169118 0.981425927 0.82028429 1.003752783 0.930417139 1.140419248 1.052020358 1.066173129 0.97390002 1 22.04287866 -6.235246561 24.78141709 1.05098326 0.966033931 0.169320335 0.081404471 1144.523193 1082850.924 0.027410375 0.027401666 5.82E-07 6.235246561 -0.084949329 KLEPGGFGEKPVRPGGGDT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 KLEPGGFGEKPVRPGGGDTSPR 22 3 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 KLEPGGFGEKPVRPGGGDT(0.848)S(0.152)PR 75.71 0.0066254 210880000 360060 391300 227110 131660 354680 359000 416590 414240 303530 450050 TRUE FALSE FALSE 334821.6534 360291.9629 315053.0742 306511.1337 310192.7271 314710.23 312354.7758 319926.5948 329840.2248 337354.5507 0.992491883 1.067992005 0.933893062 0.908572696 0.919485824 0.932876789 0.925894656 0.948339349 0.977725731 1 18.3639061 -4.774609501 24.99860583 0.938411902 1.030241941 0.549518208 0.031214866 131.4161277 249446.0432 0.007929698 0.016668012 1.68E-05 4.774609501 0.091830039 KLEPGGFGEKPVRPGGGDTS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KLEPGGFGEKPVRPGGGDTSPR 22 3 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 KLEPGGFGEKPVRPGGGDT(0.137)S(0.863)PR 103.21 0.0018684 3687700000 3056400 3131200 2182500 3283100 3313300 3620500 4438800 4494400 2601700 4193600 TRUE FALSE FALSE 3736285.636 3497366.602 2989897.571 3462447.44 2983416.218 3810063.782 3490414.118 3392141.353 3123837.326 3148212.697 1.186795809 1.110905437 0.949712697 1.099813695 0.947653956 1.21023074 1.108697046 1.077481631 0.992257394 1 21.58610158 -7.745591936 6.771055582 0.995514843 1.083564906 0.166990182 0.080491051 0.262492664 52.13108414 0.061806501 0.020743588 1.80E-08 7.745591936 0.088050063 KLES(ph)TESR ddPTM_HeLa_A485_30min_R1 5 KLESTESR 8 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 KLES(0.81)T(0.19)ESR;KLES(0.834)T(0.166)ESR;KLES(0.763)T(0.237)ESR;KLES(0.949)T(0.051)ESR;KLES(0.853)T(0.147)ESR ;;;; 142.08 0.00023283 4879230000 7738390 8100280 5815460 9867810 8860900 7271870 10725010 10928420 6312060 10859070 TRUE FALSE FALSE 9459768.158 9047537.283 7966840.655 10406863.47 7978677.683 7652613.869 8433523.998 8248207.86 7578832.544 8152103.695 1.160408222 1.1098408 0.977274205 1.276586248 0.978726226 0.93872872 1.034521188 1.011788879 0.929678133 1 22.95874097 KLES(ph)TESR ddPTM_HeLa_A486_30min_R1 6 KLESTESR 8 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 KLES(0.878)T(0.121)ES(0.001)R;KLES(0.81)T(0.19)ESR;KLES(0.5)T(0.5)ESR;KLES(0.676)T(0.324)ESR;KLES(0.821)T(0.179)ESR;KLES(0.929)T(0.071)ESR ;;;;; 134.3 0.00029315 4532620000 8526590 6982040 4768270 3657440 7106160 8125500 9865730 8419310 5946270 10685220 TRUE FALSE FALSE 7928920.072 6428757.722 6614671.843 8514705.157 6214839.15 7123058.424 7397220.005 6502416.905 6461697.471 8009571.363 0.989930636 0.802634427 0.825845921 1.06306627 0.775926559 0.889318304 0.92354755 0.811830822 0.806746975 1 22.93329361 KLESGGGGEGGEGT(ph)EEEDGAER ddPTM_HeLa_A485_30min_R1 1 KLESGGGGEGGEGTEEEDGAER 22 1 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 0 KLESGGGGEGGEGT(1)EEEDGAER 157.08 3.18E-10 581590000 182050 203050 173550 244820 279940 215850 264520 259060 160660 294210 TRUE FALSE FALSE 222546.3944 226794.9312 237753.367 258193.8967 252068.1907 227151.5722 208003.1411 195525.1288 192902.9883 220868.8615 1.007595153 1.026830716 1.076445839 1.168991839 1.141257255 1.028445434 0.941749505 0.885254388 0.873382454 1 17.75283051 -6.702317247 2.881581698 0.910929289 1.085260447 0.649248298 0.055013484 0.16891531 2.851750994 0.026205908 0.018534983 1.98E-07 6.702317247 0.174331158 KLESGGGGEGGEGT(ph)EEEDGAER ddPTM_HeLa_A486_30min_R1 2 KLESGGGGEGGEGTEEEDGAER 22 1 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 0 KLESGGGGEGGEGT(1)EEEDGAER;KLESGGGGEGGEGT(1)EEEDGAER ; 210.68 2.40E-27 454370000 355810 387860 237010 154351 411650 407960 486860 442380 334230 488400 TRUE FALSE FALSE 330869.5564 357124.561 328786.6193 359336.9285 360017.0185 357630.043 365042.4785 341659.7311 363201.3255 366101.461 0.903764643 0.975479748 0.898075136 0.981522793 0.983380447 0.976860464 0.997107407 0.933237825 0.992078328 1 18.48188401 -5.287317167 24.36154756 0.978464503 0.930743831 0.474447607 0.026219535 487.9140251 459324.8666 0.006981465 0.010359368 5.16E-06 5.287317167 -0.047720672 KLESSEENLS(ph)S(ph)EDEELPCFQHLLFGK ddPTM_HeLa_A485_30min_R1 1 KLESSEENLSSEDEELPCFQHLLFGK 26 1 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 2 0 KLESSEENLS(1)S(1)EDEELPCFQHLLFGK 200.48 4.18E-28 140790000 49685 38277 29173 69548 62654 53171 78228 81793 42128 87411 TRUE FALSE FALSE 60737.25684 42753.16218 39965.30669 73347.23114 56415.94777 55954.95134 61513.94874 61733.1385 50582.70318 65621.04638 0.925575866 0.651516008 0.609031841 1.117739432 0.85972338 0.852698249 0.937411884 0.94075212 0.770830488 1 16.00187098 -5.244700576 24.94204533 0.917835525 0.720988725 0.372589074 0.116648227 856.685654 1276522.827 0.031135747 0.053737575 5.69E-06 5.244700576 -0.196846799 KLESSEENLS(ph)S(ph)EDEELPCFQHLLFGK ddPTM_HeLa_A486_30min_R1 2 KLESSEENLSSEDEELPCFQHLLFGK 26 1 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 2 0 KLES(0.046)S(0.048)EENLS(0.956)S(0.95)EDEELPCFQHLLFGK;KLES(0.005)S(0.005)EENLS(0.996)S(0.995)EDEELPCFQHLLFGK ; 85.866 0.0067862 136542000 123650 124295 60547 75461 126109 141444 169926 152113 105131 183789 TRUE FALSE FALSE 114982.7735 114445.4115 83992.4199 175677.0216 110291.2333 123994.0774 127408.7175 117480.1905 114243.8397 137767.0381 0.834617446 0.830716934 0.609669926 1.275174555 0.80056329 0.900027169 0.92481278 0.852745273 0.829253799 1 17.07187123 KLESTESRSS(ph)FSQHAR ddPTM_HeLa_A485_30min_R1 2 KLESTESRSSFSQHAR 16 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 KLESTESRS(0.037)S(0.959)FS(0.005)QHAR;KLESTES(0.007)RS(0.145)S(0.83)FS(0.018)QHAR ; 149.53 2.46E-08 300150000 56149 155777 149809 55100 220800 201460 230460 498920 114533 67995 TRUE FALSE FALSE 68639.15134 173993.7651 205229.5832 58109.97348 198816.3767 212008.1341 181220.3383 376559.0877 137518.7225 51045.09786 1.344676653 3.408628299 4.020554212 1.138404586 3.894916164 4.153349548 3.550200625 7.376988262 2.694063256 1 15.6394848 -5.970132452 24.52219875 4.127737276 2.637454771 0.101036489 1.707515669 320.5872716 263210.4107 0.5125273 0.581143731 1.07E-06 5.970132452 -1.490282505 KLESVFFHSLS(ph)GSK ddPTM_HeLa_A485_30min_R1 1 KLESVFFHSLSGSK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 KLESVFFHS(0.019)LS(0.777)GS(0.203)K 70.335 0.0085438 91871000 73305 75049 58939 82510 95297 82281 112150 117340 72886 122190 TRUE FALSE FALSE 89611.44435 83825.32771 80742.98876 87017.31237 85808.89607 86589.10593 88188.23632 88562.18102 87513.55165 91730.28174 0.97690144 0.913823943 0.880221746 0.948621445 0.935447863 0.943953341 0.961386302 0.965462869 0.95403121 1 16.48511045 -7.522828785 0.457847598 0.998164307 0.923668977 0.416045218 0.024160351 0.937234582 0.516812806 0.028242795 0.01852407 3.00E-08 7.522828785 -0.07449533 KLESVFFHSLS(ph)GSK ddPTM_HeLa_A486_30min_R1 1 KLESVFFHSLSGSK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 KLESVFFHS(0.001)LS(0.992)GS(0.008)K 100.77 0.00053362 102680000 160390 144560 74225 61584 139920 150710 217430 199800 125490 203970 TRUE FALSE FALSE 149147.4893 133104.5391 102966.9078 143370.6643 122369.9289 132116.9325 163026.7143 154309.9016 136367.5742 152894.5844 0.975492297 0.870564119 0.673450327 0.937709238 0.800354894 0.864104723 1.06626873 1.009256817 0.89190585 1 17.22217778 -6.658117899 7.135591118 0.992116197 0.846212168 0.383363861 0.085799969 0.234571365 14.29981597 0.033223791 0.025607484 2.20E-07 6.658117899 -0.145904029 KLET(ph)SKRPPSGTSTTSK ddPTM_HeLa_A486_30min_R1 1 KLETSKRPPSGTSTTSK 17 3 A0A0A0MRS7;Q68DC2 A0A0A0MRS7 ANKS6 Ankyrin repeat and SAM domain-containing protein 6 1 0 KLET(0.29)S(0.29)KRPPS(0.29)GT(0.044)S(0.044)T(0.044)TSK 60.474 0.030763 342200000 651510 546290 202800 476050 466950 830770 1113200 942480 415570 1353800 TRUE FALSE FALSE 605842.5134 502999.9908 281329.5912 1108268.458 408380.7769 728278.0441 834665.5858 727897.8782 451591.9422 1014799.668 0.597007008 0.495664323 0.277226728 1.092105657 0.40242502 0.717656959 0.822492963 0.717282338 0.445006001 1 19.95276352 -14 0.100756006 2.072752573 0.393894784 0.201640238 0.223426065 306.9044397 2.09672711 70.91525271 3.65767308 1.00E-14 14 -1.678857789 KLEYDSGS(ph)LK ddPTM_HeLa_A486_30min_R1 2 KLEYDSGSLK 10 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 KLEYDS(0.262)GS(0.738)LK;KLEYDS(0.157)GS(0.843)LK ; 71.692 0.007589 266080000 648090 517630 196279 251710 330020 523270 635410 555360 405070 1186590 TRUE FALSE FALSE 602662.2377 476611.1136 272283.4853 585993.6007 288625.8143 458714.2676 476423.6973 428916.6514 440181.7937 889460.1406 0.677559578 0.535843139 0.306122189 0.658819405 0.324495501 0.515722118 0.535632431 0.482221329 0.494886475 1 19.76257043 -10.16247632 3.063085446 1.001361312 0.498610657 0.633232336 0.113309139 5889316.466 8300037.283 78477.38591 0.028025504 6.88E-11 10.16247632 -0.502750655 KLFAPQQILQCS(ph)PAN ddPTM_HeLa_A485_30min_R1 2 KLFAPQQILQCSPAN 15 1 K7ERV3;P04183 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 KLFAPQQILQCS(1)PAN;KLFAPQQILQCS(1)PAN ; 162.46 1.78E-11 1595790000 2777600 3166600 3090300 2635800 4316500 2877200 3411800 3426700 3026300 3609000 TRUE FALSE FALSE 3395467.537 3536906.324 4233530.568 2779787.08 3886734.104 3027845.743 2682841.058 2586296.452 3633650.651 2709342.719 1.253244012 1.305448107 1.562567385 1.026000535 1.434567165 1.117557304 0.990218417 0.954584459 1.341155781 1 21.36951147 -6.417046483 5.921585472 1.065856295 1.31244504 0.348811067 0.161723934 0.265436339 12.54753663 0.056160555 0.049169075 3.83E-07 6.417046483 0.246588745 KLFAPQQILQCS(ph)PAN ddPTM_HeLa_A486_30min_R1 1 KLFAPQQILQCSPAN 15 1 K7ERV3;P04183 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 KLFAPQQILQCS(1)PAN 124.16 7.78E-05 844150000 1549100 1868300 1712300 655080 2277000 1565500 1825500 1783500 1405500 1628400 TRUE FALSE FALSE 1440516.09 1720249.104 2375348.417 1525059.346 1991397.428 1372364.527 1368740.592 1377435.984 1527329.872 1220638.041 1.180133702 1.409303205 1.945989177 1.24939523 1.631439756 1.124300965 1.121332079 1.128455723 1.251255344 1 20.21920403 -6.275202356 24.14291027 1.132863713 1.491859485 0.432254414 0.205033888 501.6865459 880051.6255 0.072005226 0.063867027 5.31E-07 6.275202356 0.358995772 KLFIGGLSFETTDDSLR ddPTM_HeLa_A485_30min_R1 1 KLFIGGLSFETTDDSLR 17 1 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 132.13 3.67E-06 24489000 13005 16600 13917 11472 15627 17030 19256 21973 14376 18418 FALSE FALSE TRUE 15897.91738 18541.2256 19065.47743 12098.68631 14071.12101 17921.66447 15141.79829 16584.0873 17261.13134 13826.73156 1.149795765 1.340969521 1.378885339 0.875021422 1.017675143 1.296160585 1.095110455 1.199422092 1.248388403 1 13.75517254 -5.212665898 24.99984953 1.116820384 1.294992143 0.295917949 0.129978866 534.3864625 273909.8808 0.036587926 0.063371981 6.13E-06 5.212665898 0.17817176 KLFIGGLSFETTDESLR ddPTM_HeLa_A485_30min_R1 3 KLFIGGLSFETTDESLR 17 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ;; ;; 242.45 2.00E-33 218057000 181536 292992 228119 153103 296683 282448 340523 438420 209254 259312 FALSE FALSE TRUE 221918.0569 327254.8657 312509.7109 161466.6292 267144.1988 297236.5405 267767.4792 330896.8076 251249.3584 194670.2907 1.139968796 1.681072466 1.605328218 0.829436421 1.372290542 1.526871612 1.375492266 1.699780724 1.290640485 1 17.5706732 KLFIGGLSFETTDESLR ddPTM_HeLa_A486_30min_R1 1 KLFIGGLSFETTDESLR 17 1 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 253.48 6.14E-43 83776000 155360 134230 103530 60954 177560 140420 183990 177800 119630 187750 FALSE FALSE TRUE 144470.0663 123593.1259 143619.5886 141903.9924 155288.7691 123096.4081 137953.756 137318.8213 129999.6247 140736.178 1.026531119 0.878190155 1.020488056 1.008297898 1.103403342 0.87466073 0.980229519 0.975717995 0.923711491 1 17.10263371 -6.281471246 24.99100828 0.951181685 1.000983789 0.173385552 0.060904623 1771.451631 2209990.035 0.021792242 0.019243014 5.23E-07 6.281471246 0.049802104 KLFIGGLSFETTEESLR ddPTM_HeLa_A485_30min_R1 3 KLFIGGLSFETTEESLR 17 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;; ;; 247.46 4.24E-34 186168000 123698 170970 140685 121269 188040 179273 211524 286885 133459 164540 FALSE FALSE TRUE 151214.1933 190963.4543 192730.2359 127893.6184 169318.0774 188659.4571 166330.1694 216526.0039 160242.9971 123523.2061 1.224176396 1.545972293 1.56027553 1.035381305 1.370739011 1.52731995 1.346549969 1.752917615 1.297270385 1 16.91442258 -6.020249678 23.74723945 1.431650028 1.3506116 0 0.228356742 1959.006655 2297368.876 0.07343363 0.074437067 9.54E-07 6.020249678 -0.081038428 KLFIGGLSFETTEESLR ddPTM_HeLa_A486_30min_R1 2 KLFIGGLSFETTEESLR 17 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 240.21 2.71E-33 91762000 53204 58883 58329 34353 75597 62240 74139 72843 56969 77044 FALSE FALSE TRUE 49474.67435 54216.89663 80915.5509 79975.5201 66114.91935 54561.46161 55588.63804 56258.23905 61907.11879 57751.68093 0.856679382 0.938793395 1.401094299 1.384817183 1.144813766 0.944759715 0.962545802 0.974140287 1.07195354 1 15.81757532 -6.217721557 7.61254019 0.987372337 1.161796005 0.183262083 0.161243759 0.508427093 78.99682198 0.059937912 0.059589621 6.06E-07 6.217721557 0.174423668 KLFQHIADYLPSYARPR ddPTM_HeLa_A486_30min_R1 1 KLFQHIADYLPSYARPR 17 2 G3V1R7;O14975-2;O14975 G3V1R7 SLC27A2 Very long-chain acyl-CoA synthetase 0 0 49.049 0.035357 3755000 10110 6229.1 8144.9 3797.2 11024 6620.1 9771.5 8366.7 7464.5 10578 FALSE FALSE TRUE 9401.341208 5735.48343 11298.82341 8840.0735 9641.267125 5803.37937 7326.567348 6461.785054 8111.52887 7929.199949 1.185660756 0.723336966 1.424963865 1.114875846 1.215919284 0.731899739 0.923998309 0.814935314 1.022994618 1 12.95295959 -6.251374736 24.87160463 0.888776095 1.125413714 0.29549582 0.180282189 851.138553 2103322.161 0.05894883 0.058288848 5.61E-07 6.251374736 0.23663762 KLFVGGIKEDTEEHHLR ddPTM_HeLa_A485_30min_R1 2 KLFVGGIKEDTEEHHLR 17 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 170.91 2.60E-12 501410000 600220 959710 553390 522320 901010 1156520 1486180 2557440 670830 821660 FALSE FALSE TRUE 733736.8683 1071939.736 758111.9895 550853.019 811302.2808 1217073.599 1168645.502 1930223.83 805459.4278 616835.2835 1.189518317 1.73780548 1.229034735 0.893030982 1.315265683 1.973093355 1.894582773 3.129237062 1.305793377 1 19.23452577 -6.257548172 5.377101505 1.999245978 1.271791134 0.196959071 0.560061667 0.232046226 23.94809859 0.188534766 0.177687918 5.53E-07 6.257548172 -0.727454845 KLFVGGIKEDTEEHHLR ddPTM_HeLa_A486_30min_R1 2 KLFVGGIKEDTEEHHLR 17 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 139.67 7.25E-07 384630000 604960 304254 332414 288933 781930 477400 685770 639770 245379 770020 FALSE FALSE TRUE 562555.428 280143.805 461133.6032 672650.6259 683853.0482 418503.2418 514183.0927 494108.3371 266648.6493 577201.98 0.97462491 0.485347963 0.798912026 1.165364377 1.184772527 0.725055104 0.890820043 0.856040613 0.461967662 1 19.13871672 -13.01859023 13.20752704 0.995047209 0.853750787 0 0.235125861 0 0 0 0.055753048 9.58E-14 13.01859023 -0.141296422 KLFVGGLK ddPTM_HeLa_A485_30min_R1 2 KLFVGGLK 8 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 ; ; 131.06 0.00024656 0 431250 533310 409700 442970 522960 536680 637520 666330 448910 612790 FALSE FALSE TRUE 527180.0747 595675.9653 561265.079 467168.3294 470892.2662 564779.7349 501308.6439 502911.5227 539002.1194 460032.7306 1.145962102 1.294855617 1.220054665 1.015511068 1.023606006 1.227694678 1.089723862 1.093208134 1.17166037 1 18.81137698 -1 0.176934691 1.045679095 1.787468488 0.22013621 0.084285603 94.85293232 1.054793919 0.21228048 18.83480588 0.1 1 0.741789394 KLFVGGLK ddPTM_HeLa_A486_30min_R1 4 KLFVGGLK 8 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 ;;; ;;; 131.06 0.00024656 0 649469 696315 404977 189465 656327 672965 693155 673050 546858 844392 FALSE FALSE TRUE 603944.577 641136.4635 561794.9401 441084.095 574004.3477 589941.4205 519720.2876 519811.2076 594260.0917 632950.7471 0.954173101 1.012932628 0.887580815 0.696869538 0.90687048 0.932049489 0.821106998 0.821250642 0.938872565 1 19.27173372 -4.857285231 5.836116325 0.862726958 0.982522942 0.216636544 0.08016468 0.257130877 12.71365373 0.020882953 0.044920447 1.39E-05 4.857285231 0.119795984 KLFYVLSTLAFSK ddPTM_HeLa_A485_30min_R1 1 KLFYVLSTLAFSK 13 1 H7BZJ7;Q9BXW9-3;Q9BXW9;Q9BXW9-1 H7BZJ7 FANCD2 Fanconi anemia group D2 protein 0 0 72.089 0.0063635 0 2547.1 2096.4 1967.3 3428 3053.7 1333.3 3205.7 3252.9 1151.3 5019.6 FALSE FALSE TRUE 3113.693608 2341.555744 2695.086136 3615.26296 2749.662906 1403.109526 2520.776007 2455.121175 1382.35535 3768.306099 0.826284682 0.621381513 0.715198305 0.959386755 0.72968141 0.372344892 0.668941413 0.65151851 0.36683733 1 11.87970044 -4.2500698 22.67886854 0.667279432 0.826285014 0.048780598 0.195404587 1573.154877 3137740.611 0.048903211 0.667587032 5.62E-05 4.2500698 0.159005582 KLGAGEGGEAS(ph)VSPEKTSTTSK ddPTM_HeLa_A486_30min_R1 1 KLGAGEGGEASVSPEKTSTTSK 22 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.498)VS(0.498)PEKT(0.001)S(0.001)T(0.001)TSK 71.085 0.0030125 915680000 275010 245980 117500 191970 303310 279380 400730 439120 188550 510130 TRUE FALSE FALSE 255733.2192 226487.649 162999.1468 446915.8616 265266.0315 244912.9361 300463.1155 339141.9619 204893.6658 382390.1276 0.668775684 0.592294708 0.426264004 1.168743201 0.69370523 0.640479234 0.78575019 0.886900413 0.535823629 1 18.54468575 -14 0.058770329 1.853145656 0.334104867 0.149537775 0.196529022 860.8586469 3.693781091 111.7804017 19.27747602 1.00E-14 14 -1.519040789 KLGAGEGGEASVS(ph)PEK ddPTM_HeLa_A485_30min_R1 3 KLGAGEGGEASVSPEK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.012)VS(0.988)PEK;KLGAGEGGEAS(0.002)VS(0.998)PEK;KLGAGEGGEAS(0.004)VS(0.996)PEK ;; 162.72 4.16E-12 10699500000 7647100 5271600 3526160 11991400 6689200 5713700 9824100 7221600 4908900 14230100 TRUE FALSE FALSE 9348171.013 5888067.763 4830633.32 12646459.82 6023199.761 6012860.497 7725100.779 5450491.277 5894071.203 10682797.96 0.87506766 0.55117281 0.452188026 1.183815314 0.563822304 0.562854462 0.723134596 0.510211959 0.551734782 1 23.34878622 -10.09402914 5.013533564 1.000008672 0.660858977 0.190343151 0.207953163 2.25E-05 4.06E-06 0.199864969 0.048472985 8.05E-11 10.09402914 -0.339149695 KLGAGEGGEASVS(ph)PEK ddPTM_HeLa_A486_30min_R1 5 KLGAGEGGEASVSPEK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.008)VS(0.992)PEK;KLGAGEGGEAS(0.003)VS(0.997)PEK;KLGAGEGGEAS(0.004)VS(0.996)PEK;KLGAGEGGEAS(0.003)VS(0.997)PEK;KLGAGEGGEAS(0.192)VS(0.808)PEK ;;;; 202.16 9.25E-25 11620460000 6460320 6287600 2352101 3697380 4460950 7016490 8824090 7469120 4557220 10456520 TRUE FALSE FALSE 6007484.929 5789347.677 3262897.499 8607687.495 3901416.054 6150866.802 6616209.35 5768564.426 4952243.499 7838139.331 0.766442733 0.738612499 0.416284702 1.098179955 0.497747729 0.784735578 0.844104585 0.735960945 0.63181366 1 22.90207979 -11.22873361 2.159427822 1.856985876 0.725213913 0.179103156 0.177391679 9740929.858 1792894.542 40702073 0.043075451 5.91E-12 11.22873361 -1.131771962 KLGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_A485_30min_R1 5 KLGAGEGGEASVSPEKTSTTSK 22 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.003)VS(0.995)PEKTSTTSK;KLGAGEGGEAS(0.054)VS(0.936)PEKT(0.002)S(0.002)T(0.006)T(0.002)SK;KLGAGEGGEAS(0.004)VS(0.976)PEKT(0.008)S(0.002)T(0.008)T(0.002)SK;KLGAGEGGEASVS(0.993)PEKT(0.004)S(0.001)T(0.001)TSK;KLGAGEGGEAS(0.037)VS(0.947)PEKT(0.005)S(0.005)T(0.005)T(0.001)SK ;;;; 227.04 1.60E-36 9697350000 3832660 3185990 1649290 5347810 4922150 5174610 9699680 10761400 3212720 8044330 TRUE FALSE FALSE 4685221.994 3558563.816 2259431.004 5639947.319 4432083.463 5445544.578 7627264.129 8122149.777 3857483.435 6039026.576 0.77582404 0.589261162 0.374138278 0.933916625 0.733906931 0.901725553 1.262995622 1.344943539 0.638759142 1 22.52588459 -6.04764163 1.332440135 1.08012778 0.612980214 0.397703519 0.22025786 0.40941401 1.497178142 0.097097976 0.105173923 8.96E-07 6.04764163 -0.467147566 KLGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_A486_30min_R1 5 KLGAGEGGEASVSPEKTSTTSK 22 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.03)VS(0.97)PEKTSTTSK;KLGAGEGGEAS(0.02)VS(0.979)PEKTSTTSK;KLGAGEGGEAS(0.015)VS(0.985)PEKTSTTSK;KLGAGEGGEAS(0.005)VS(0.995)PEKTSTTSK;KLGAGEGGEAS(0.061)VS(0.921)PEKT(0.012)S(0.003)T(0.003)TSK ;;;; 219.27 3.40E-36 5327300000 4715255 3725970 1438219 3528385 4272543 4861509 8302060 7821260 2798460 8446110 TRUE FALSE FALSE 4384739.974 3430710.567 1995135.914 8214258.595 3736640.817 4261745.448 6224796.778 6040529.835 3041032.766 6331149.081 0.692566218 0.541878026 0.315130143 1.297435661 0.590199468 0.67313933 0.983201738 0.954096919 0.480328725 1 22.59403594 -5.223701531 24.99995325 0.838993826 0.519060176 0.297782104 0.236726921 746.7293489 494680.1844 0.062866706 0.108885534 5.97E-06 5.223701531 -0.31993365 KLGDVS(ph)PTQIDVSQFGSFK ddPTM_HeLa_A485_30min_R1 1 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.971)PT(0.029)QIDVSQFGSFK 197.28 1.22E-25 20446000000 1083000 1005200 779310 1278200 1572500 986640 1320300 1128700 1310400 1837500 TRUE FALSE FALSE 1323909.614 1122749.396 1067609.199 1348024.829 1415936.379 1038298.945 1038207.119 851884.5553 1573385.26 1379445.067 0.959740729 0.813913814 0.773941076 0.977222553 1.026453617 0.752693217 0.75262665 0.617555984 1.140592908 1 20.39565658 -6.292145663 24.96106308 0.822536824 0.901049678 0.014006869 0.152695098 2272.280617 1847124.116 0.053698156 0.047362459 5.10E-07 6.292145663 0.078512854 KLGDVS(ph)PTQIDVSQFGSFK ddPTM_HeLa_A486_30min_R1 2 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.964)PT(0.036)QIDVSQFGSFK;KLGDVS(0.963)PT(0.037)QIDVSQFGSFK ; 268.12 6.11E-59 16280869000 8347907 7597919 4001804 2809123 6411218 7648333 9461560 8684350 5880614 8787410 TRUE FALSE FALSE 7762761.828 6995832.227 5551409.681 6539780.309 5607063.256 6704759.437 7094177.614 6707113.083 6390350.356 6586985.34 1.17849994 1.062068893 0.842784581 0.992833591 0.851233602 1.017879818 1.07699915 1.018237135 0.970147955 1 22.65118691 -4.523336694 24.99884158 0.972412801 1.149392228 0.460186824 0.069730731 12.0028823 655270.6292 0.018681681 0.050441901 3.00E-05 4.523336694 0.176979427 KLGDVS(ph)PTQIDVSQFGSFKEDTK ddPTM_HeLa_A485_30min_R1 1 KLGDVSPTQIDVSQFGSFKEDTK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.873)PT(0.127)QIDVSQFGSFKEDTK 85 0.0020965 1426900000 217180 196810 89310 256730 249380 286410 507410 588210 167020 399110 TRUE FALSE FALSE 265490.9417 219825.2175 122349.4855 270754.5098 224550.8516 301405.9847 398997.7083 443950.5752 200539.382 299619.2221 0.88609449 0.733681958 0.40834992 0.903662015 0.74945409 1.005963445 1.331682612 1.481715933 0.66931414 1 18.19277066 -6.364503352 2.986675151 1.161917961 0.722439637 0.367529089 0.237061951 0.266224281 4.578198373 0.090397925 0.078679887 4.32E-07 6.364503352 -0.439478324 KLGDVS(ph)PTQIDVSQFGSFKEDTK ddPTM_HeLa_A486_30min_R1 2 KLGDVSPTQIDVSQFGSFKEDTK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.746)PT(0.254)QIDVSQFGSFKEDTK;KLGDVS(0.941)PT(0.059)QIDVSQFGSFKEDTK ; 319.15 2.52E-105 8790200000 3496600 2385500 952180 1991480 2527400 2879200 5023600 4589200 1668970 5057400 TRUE FALSE FALSE 3251506.396 2196464.292 1320889.596 4636266.084 2210389.925 2523993.578 3766642.146 3544339.342 1813637.663 3790994.122 0.857692281 0.579390055 0.348428289 1.222968418 0.583063401 0.665786729 0.993576361 0.934936649 0.478406878 1 21.85414479 -5.234122748 24.99910602 0.825565896 0.593592281 0.180687333 0.237372659 1367.733794 1251694.697 0.063427345 0.10982376 5.83E-06 5.234122748 -0.231973615 KLGDVSPT(ph)QIDVSQFGSFK ddPTM_HeLa_A485_30min_R1 1 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.218)PT(0.782)QIDVSQFGSFK 250.82 1.54E-46 15565000000 5928700 5038000 3388300 6977200 5856900 4987200 7325000 6190200 4876100 9164300 TRUE FALSE FALSE 7247518.861 5627150.275 4641773.169 7358346.769 5273766.471 5248322.08 5759953.91 4672043.744 5854688.544 6879808.666 1.053447736 0.817922496 0.674695096 1.069556891 0.766557142 0.762858727 0.837225887 0.679095011 0.850995838 1 22.71393701 KLGDVSPT(ph)QIDVSQFGSFK ddPTM_HeLa_A486_30min_R1 1 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.48)PT(0.52)QIDVSQFGSFK 298.32 3.55E-79 20139000000 11652000 11047000 5188000 4286900 8707400 11381000 13183000 12012000 8735500 12345000 TRUE FALSE FALSE 10835254.97 10171595.49 7196932.539 9980119.848 7615236.699 9976927.934 9884473.964 9277129.82 9492700.173 9253731.648 1.170906547 1.099188508 0.777733007 1.078496787 0.822936842 1.078151854 1.068160861 1.002528512 1.025824017 1 23.14160383 -9.30625845 14.40219429 1.000018159 1.008793446 0 0.116578923 0 0 0.111785714 0.027112018 4.94E-10 9.30625845 0.008775287 KLGDVSPT(ph)QIDVSQFGSFKEDTK ddPTM_HeLa_A485_30min_R1 1 KLGDVSPTQIDVSQFGSFKEDTK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.349)PT(0.651)QIDVSQFGSFKEDTK 309.78 3.97E-104 878830000 394210 340530 164150 510310 512490 563870 999610 1149100 372750 807310 TRUE FALSE FALSE 481900.6545 380352.0213 224875.9159 538186.9431 461464.6961 593393.3613 786035.1574 867281.4233 447557.5059 606062.4744 0.795133629 0.6275789 0.371044117 0.888005719 0.761414401 0.979096028 1.296954011 1.431009937 0.738467608 1 19.20910699 -6.153099769 1.587002823 1.148486844 0.634329503 0.479498871 0.212188117 0.31052182 1.563879597 0.089624649 0.088418423 7.03E-07 6.153099769 -0.514157342 KLGNS(ph)LLR ddPTM_HeLa_A486_30min_R1 1 KLGNSLLR 8 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KLGNS(1)LLR 93.258 0.001995 165530000 278320 290130 194850 107680 309850 276750 312020 334270 239520 340930 TRUE FALSE FALSE 258811.2052 267139.0422 270301.1383 250684.4818 270985.7238 242607.3988 233949.2958 258164.0181 260281.7865 255558.9089 1.01272621 1.04531297 1.057686227 0.980926405 1.060365005 0.949320843 0.915441754 1.010193772 1.018480583 1 17.96329636 -6.263623697 24.99990106 0.975371649 1.030832003 0.354101907 0.035453052 236.5754134 2707620.893 0.012769443 0.011798867 5.45E-07 6.263623697 0.055460355 KLGPGRPLPTFPTSECT(ph)SDVEPDTR ddPTM_HeLa_A485_30min_R1 1 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 KLGPGRPLPTFPT(0.008)S(0.008)ECT(0.58)S(0.403)DVEPDTR 66.879 0.011938 684050000 140720 211760 205510 174750 295610 224310 272420 348950 212470 242370 TRUE FALSE FALSE 172022.6785 236523.4899 281536.701 184296.15 266178.0305 236054.5248 214215.2415 263369.4654 255110.7801 181951.6195 0.945430873 1.29992517 1.547316269 1.012885461 1.462905531 1.297347753 1.177319785 1.447469751 1.402080294 1 17.47319537 -4.263084705 7.222448449 1.309281954 0.940881654 0.257964198 0.175798715 0.127749768 57.79626104 0.041023535 0.233843093 5.46E-05 4.263084705 -0.368400301 KLGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_HeLa_A485_30min_R1 3 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 KLGPGRPLPTFPTSECT(0.21)S(0.79)DVEPDTR;KLGPGRPLPTFPTSECT(0.027)S(0.973)DVEPDTR;KLGPGRPLPTFPTSECT(0.063)S(0.937)DVEPDTR ;; 219.65 2.13E-38 4887210000 1271680 1665900 1463390 1200760 2259510 1768170 2163070 2637040 1526150 1751490 TRUE FALSE FALSE 1554560.829 1860712.514 2004758.858 1266354.478 2034545.251 1860748.647 1700912.424 1990301.805 1832434.306 1314875.777 1.182287222 1.415124186 1.524675481 0.963098188 1.547328871 1.415151667 1.293591725 1.513680486 1.393617814 1 20.32649508 -10.02006816 5.344454966 0.999997885 1.365244633 0.28996528 0.169327819 4.13E-06 7.57E-07 0.15852002 0.038446529 9.55E-11 10.02006816 0.365246748 KLGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_HeLa_A486_30min_R1 3 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 KLGPGRPLPTFPTSECT(0.024)S(0.976)DVEPDTR;KLGPGRPLPTFPTSECT(0.206)S(0.794)DVEPDTR;KLGPGRPLPTFPTSECT(0.276)S(0.724)DVEPDTR ;; 260.76 5.81E-62 4841950000 1489930 1846840 1645800 771318 2609650 1674140 2256420 2339040 1490470 1795250 TRUE FALSE FALSE 1385493.601 1700489.672 2283097.836 1795667.284 2282323.363 1467601.628 1691839.85 1806491.653 1619665.14 1345707.715 1.029565028 1.263639685 1.696577801 1.334366493 1.696002288 1.090579783 1.257211972 1.342410118 1.203578698 1 20.35993366 -6.305007233 24.99950168 1.205060255 1.408613769 0.230146833 0.203092632 821.8409943 471574.9576 0.073092443 0.064461746 4.95E-07 6.305007233 0.203553514 KLGPIS(ph)PPQPPSVSAWNKPLTSFGSAPSSEGAK ddPTM_HeLa_A485_30min_R1 1 KLGPISPPQPPSVSAWNKPLTSFGSAPSSEGAK 33 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2 E7EPN9 PRRC2C Protein PRRC2C 1 0 KLGPIS(1)PPQPPSVSAWNKPLTSFGSAPSSEGAK 110.33 3.77E-05 912790000 268110 227350 166870 276830 335010 320220 413930 462670 262960 402590 TRUE FALSE FALSE 327750.1445 253936.6048 228602.157 291952.5219 301655.2281 336986.224 325490.474 349199.4571 315733.66 302231.7221 1.084433302 0.840205002 0.75638042 0.96598901 0.998092543 1.114992899 1.076956686 1.155403062 1.044674125 1 18.20529557 -5.839775222 2.242694334 1.086488754 0.888574176 0.443798399 0.087714472 0.256038533 2.637159601 0.030218559 0.036718099 1.45E-06 5.839775222 -0.197914578 KLGPIS(ph)PPQPPSVSAWNKPLTSFGSAPSSEGAK ddPTM_HeLa_A486_30min_R1 2 KLGPISPPQPPSVSAWNKPLTSFGSAPSSEGAK 33 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2 E7EPN9 PRRC2C Protein PRRC2C 1 0 KLGPIS(1)PPQPPSVSAWNKPLTSFGSAPSSEGAK;KLGPIS(1)PPQPPSVSAWNKPLTSFGSAPSSEGAK ; 254.78 5.39E-64 2218600000 770560 675670 296750 293640 656160 768850 950600 904380 539360 1008280 TRUE FALSE FALSE 716547.7232 622127.4485 411659.5472 683608.7597 573858.2944 673997.1041 712749.8256 698472.4165 586112.1591 755800.1252 0.948065103 0.82313753 0.544667212 0.904483523 0.759272558 0.89176633 0.9430401 0.924149644 0.77548566 1 19.52764523 -6.329939872 5.933630902 0.90553647 0.7896176 0.193125137 0.113158942 0.399486728 26.56225748 0.040635829 0.035861975 4.68E-07 6.329939872 -0.115918871 KLGVSVS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 KLGVSVSPSR 10 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 KLGVS(0.006)VS(0.895)PS(0.099)R 102.52 0.00076925 637400000 701190 837270 813570 796340 997560 893950 1151300 1206900 888130 1072100 TRUE FALSE FALSE 857167.2964 935181.4432 1114543.398 839842.0378 898239.4238 940755.8397 905315.3497 910905.8827 1066369.545 804845.2005 1.065008893 1.161939517 1.384792253 1.043482694 1.116039983 1.168865565 1.124831644 1.131777741 1.324937446 1 19.6183518 KLGVSVS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 KLGVSVSPSR 10 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 KLGVS(0.03)VS(0.485)PS(0.485)R;KLGVS(0.056)VS(0.944)PSR;KLGVS(0.058)VS(0.904)PS(0.039)R;KLGVS(0.039)VS(0.958)PS(0.003)R ;;; 115.12 0.00029563 1304030000 2281990 2492730 1931880 823605 2911510 2420630 2574950 2725220 2177820 2706620 TRUE FALSE FALSE 2122034.285 2295196.996 2679955.674 1917394.063 2546321.267 2121997.282 1930670.275 2104746.897 2366595.191 2028864.735 1.045922012 1.131271571 1.320913922 0.945057613 1.255047329 1.045903773 0.951601278 1.037401292 1.166462776 1 20.95224125 -6.483265571 24.42788422 1.03580726 1.139641607 0.17260593 0.10878451 709.6768812 437630.1901 0.037475284 0.033044316 3.29E-07 6.483265571 0.103834347 KLHMELK ddPTM_HeLa_A485_30min_R1 1 KLHMELK 7 1 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 0 0 73.26 0.021538 3739400 14631 15440 12252 14730 19460 19581 23207 26037 16438 22833 FALSE FALSE TRUE 17885.61547 17245.57369 16784.52465 15534.6626 17522.49407 20606.23088 18248.63487 19651.38493 19736.95582 17141.15331 1.043431276 1.006091794 0.979194594 0.906278727 1.022247089 1.202149617 1.064609512 1.146444733 1.151436865 1 14.06517656 -6.038762924 9.998370891 1.118397716 0.982423749 0.51372793 0.05991239 0.455752927 115.7446063 0.01909234 0.019259213 9.15E-07 6.038762924 -0.135973967 KLIDLES(ph)PTPESQK ddPTM_HeLa_A485_30min_R1 2 KLIDLESPTPESQK 14 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 KLIDLES(0.842)PT(0.158)PESQK;KLIDLES(0.942)PT(0.058)PESQK ; 101.64 0.00034191 276180000 390080 385220 268490 482340 480840 476890 667040 719580 337490 672370 TRUE FALSE FALSE 476851.9502 430268.128 367815.6238 508689.0129 432965.8813 501859.223 524521.4548 543101.8767 405221.1474 504760.5331 0.944709261 0.852420306 0.72869331 1.007782858 0.857764926 0.994252106 1.039149102 1.075959472 0.802798794 1 18.94523959 -5.859093357 1.424365333 0.987459381 0.855567872 0.210436555 0.095888752 0.589044191 2.489417599 0.037612765 0.047740131 1.38E-06 5.859093357 -0.131891509 KLIDLES(ph)PTPESQK ddPTM_HeLa_A486_30min_R1 1 KLIDLESPTPESQK 14 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 KLIDLES(0.981)PT(0.019)PESQK 114.9 0.00010933 131030000 419600 400040 208290 157870 339630 457770 496730 502120 269730 529150 TRUE FALSE FALSE 390188.2068 368339.3735 288945.4662 367529.3383 297030.4385 401294.9917 372442.9001 387798.2372 293110.4136 396647.3958 0.983715539 0.928631771 0.728469339 0.926589566 0.748852612 1.011717197 0.938977298 0.977690113 0.738969716 1 18.59749755 -6.280556145 24.96880407 0.932420636 0.862914824 0.105537051 0.10218722 2067.990479 2701036.435 0.035570165 0.03141991 5.24E-07 6.280556145 -0.069505813 KLIELQAGKK ddPTM_HeLa_A485_30min_R1 1 KLIELQAGKK 10 2 K7ELL7;P14314-2;P14314;K7EPW7 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 97.214 0.008926 7581000 14505 15225 12468 16806 21757 18289 24985 26667 16472 24725 FALSE FALSE TRUE 17731.58721 17005.43131 17080.43204 17724.06922 19590.79669 19246.58376 19646.75064 20126.87644 19777.77931 18561.51253 0.95528784 0.916166249 0.920206907 0.954882809 1.055452601 1.036908158 1.058467116 1.084333855 1.065526275 1 14.18002666 -5.697835804 3.731549712 1.054803882 0.93011061 0.853459602 0.023117229 0.076816943 2.142505903 0.007074134 0.009081207 2.01E-06 5.697835804 -0.124693272 KLIELQAGKK ddPTM_HeLa_A486_30min_R1 1 KLIELQAGKK 10 2 K7ELL7;P14314-2;P14314;K7EPW7 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 105.86 0.0040533 11478000 12340 12728 8947.2 5659.2 14335 12583 13823 14609 9717.7 17229 FALSE FALSE TRUE 11475.02972 11719.38693 12411.79545 13174.9036 12536.97063 11030.63739 10364.3392 11282.84961 10560.03806 12914.74626 0.888521501 0.90744229 0.961056083 1.020144209 0.970748506 0.854111817 0.80251977 0.873640828 0.817672903 1 13.65673168 -6.267355643 24.44856298 0.857499778 0.951798909 0.295866044 0.06022849 404.1955586 1670305.614 0.020959021 0.018996217 5.40E-07 6.267355643 0.094299131 KLIGTAVPQRT(ph)SPTGPK ddPTM_HeLa_A485_30min_R1 1 KLIGTAVPQRTSPTGPK 17 2 C9JB30;Q9UPY8 C9JB30 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 KLIGTAVPQRT(0.497)S(0.497)PT(0.007)GPK 128.41 1.50E-05 1551900000 798250 1106700 661660 792860 1133200 1348400 1800200 2175500 762930 1091700 TRUE FALSE FALSE 975817.9586 1236118.938 906435.568 836171.9342 1020374.629 1419000.139 1415572.564 1641955.214 916043.053 819559.2812 1.190661836 1.508272759 1.106003664 1.020270227 1.245028459 1.731418546 1.727236328 2.003461191 1.11772641 1 19.64448878 -6.199744514 7.491052302 1.591524319 1.212122206 0.178382285 0.303175378 0.395939073 42.89029378 0.098247507 0.098096 6.31E-07 6.199744514 -0.379402113 KLIGTAVPQRT(ph)SPTGPK ddPTM_HeLa_A486_30min_R1 1 KLIGTAVPQRTSPTGPK 17 2 C9JB30;Q9UPY8 C9JB30 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 KLIGTAVPQRT(0.603)S(0.395)PT(0.003)GPK 159.46 2.29E-09 1537000000 1841600 1418800 935230 865000 1922900 1707900 2339000 2501300 1166300 2610000 TRUE FALSE FALSE 1712513.35 1306369.121 1297376.102 2013763.715 1681711.952 1497196.663 1753757.461 1931808.593 1267395.823 1956439.012 0.875321612 0.667728006 0.66313138 1.029300532 0.85957801 0.765266207 0.896402827 0.987410587 0.647807479 1 20.89979871 -11.14488685 0.024836494 1.935744336 8.75E-06 0.120469635 0.129764863 2461.990784 8.163407708 391.3193258 256.0694988 7.16E-12 11.14488685 -1.935735582 KLIGTAVPQRTS(ph)PTGPK ddPTM_HeLa_A485_30min_R1 1 KLIGTAVPQRTSPTGPK 17 2 C9JB30;Q9UPY8 C9JB30 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 KLIGTAVPQRT(0.191)S(0.805)PT(0.004)GPK 146.19 3.09E-08 1141800000 1056100 1304100 824640 950960 1529100 1723600 2219300 2723800 999070 1340300 TRUE FALSE FALSE 1291025.801 1456603.151 1129708.652 1002908.537 1376857.435 1813845.031 1745128.425 2055783.779 1199574.185 1006187.876 1.283086223 1.447645301 1.122761145 0.996740828 1.368390007 1.802690207 1.734396196 2.043141075 1.192197017 1 19.94046828 -6.040191383 6.594042 1.627712882 1.217634511 0.20374457 0.302235993 0.273496015 33.95380218 0.096917444 0.098985416 9.12E-07 6.040191383 -0.410078371 KLIGTAVPQRTS(ph)PTGPK ddPTM_HeLa_A486_30min_R1 1 KLIGTAVPQRTSPTGPK 17 2 C9JB30;Q9UPY8 C9JB30 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 KLIGTAVPQRT(0.031)S(0.964)PT(0.005)GPK 158.78 2.58E-09 1688600000 1805400 1553300 929680 792780 2017400 1651300 2267600 2480500 1167600 2508400 TRUE FALSE FALSE 1678850.783 1430210.851 1289676.994 1845631.905 1764358.88 1447579.395 1700222.496 1915744.299 1268808.508 1880280.313 0.892872606 0.76063704 0.685896132 0.981572743 0.938348856 0.76987425 0.904238844 1.01886101 0.674797528 1 20.84251632 -14 0.082088626 1.415720072 0.726125751 0.106448797 0.116283574 548.7189612 3.171211911 42.58826634 3.736601101 1.00E-14 14 -0.689594321 KLIHLEIKPAIR ddPTM_HeLa_A486_30min_R1 1 KLIHLEIKPAIR 12 2 Q02750;Q02750-2;P36507;G5E9C7;A0A1B0GUL7 Q02750;P36507;A0A1B0GUL7 MAP2K1;MAP2K2 Dual specificity mitogen-activated protein kinase kinase 1;Dual specificity mitogen-activated protein kinase kinase 2 0 0 90.926 0.0052987 28417000 41300 24171 18823 15564 32084 32738 41568 30832 22799 45274 FALSE FALSE TRUE 38405.08327 22255.60193 26111.7697 36233.77856 28059.72555 28699.11842 31167.24674 23812.22666 24775.23568 33937.09572 1.131654977 0.655789821 0.769416744 1.067674702 0.826815759 0.845656289 0.918382852 0.701657763 0.730034057 1 15.05057549 -7.242303389 24.24662111 0.786884402 0.877366412 0.043382186 0.149260275 1543.41337 1955615.591 0.068729201 0.039589512 5.72E-08 7.242303389 0.090482009 KLILDSAR ddPTM_HeLa_A485_30min_R1 4 KLILDSAR 8 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ;;; ;;; 128.86 0.0013783 1025289000 3829640 3836680 3423430 2825718 4831320 3590360 3258850 3481130 2505490 2544500 FALSE FALSE TRUE 4681530.206 4285346.351 4689899.218 2980079.819 4350296.817 3778345.698 2562570.075 2627377.409 3008318.861 1910202.978 2.450802485 2.243398424 2.455183701 1.560085422 2.27740029 1.977981262 1.341517161 1.375444097 1.57486869 1 20.86529452 -6.310474825 0.298534956 0.946130336 2.720238248 0.742993033 0.250475945 1.239325407 0.239093453 0.366668926 0.777083659 4.89E-07 6.310474825 1.774107912 up KLILDSAR ddPTM_HeLa_A486_30min_R1 4 KLILDSAR 8 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ;;; ;;; 136.57 0.00041948 893536000 3155733 2826190 2194798 1109174 3583180 2278547 2455205 2329602 1701121 2326114 FALSE FALSE TRUE 2934532.413 2602232.412 3044682.564 2582213.127 3133744.153 1997443.038 1840886.74 1799202.479 1848575.538 1743639.914 1.682992222 1.492413881 1.746164756 1.480932563 1.797242726 1.145559368 1.05577231 1.031865849 1.060181935 1 20.7336707 -6.369502544 4.979689011 1.048288961 1.627531216 0.902799644 0.09565522 0.063087554 2.38936198 0.032064816 0.028104119 4.27E-07 6.369502544 0.579242255 KLIT(ph)SEEER ddPTM_HeLa_A485_30min_R1 1 KLITSEEER 9 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KLIT(0.677)S(0.323)EEER 117.2 0.00060769 0 198250 261480 177470 215130 250700 258480 287390 291630 199080 285220 TRUE FALSE FALSE 242350.0285 292057.8114 243123.5381 226882.0072 225739.4277 272013.6131 225986.7787 220107.2852 239033.5299 214119.9031 1.131842603 1.363991891 1.13545511 1.059602605 1.054266439 1.270379863 1.055421638 1.027962754 1.116353625 1 17.70805938 -1 0.139769391 0.976539961 1.890806502 0.281234699 0.091909205 95.91661998 0.89524034 0.408370513 17.51632146 0.1 1 0.914266541 KLITS(ph)EEER ddPTM_HeLa_A485_30min_R1 1 KLITSEEER 9 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KLIT(0.148)S(0.852)EEER 120.84 0.00024787 124370000 212870 279900 198700 221190 246340 252800 296840 299290 215060 284680 TRUE FALSE FALSE 260222.1971 312631.8702 272207.3986 233273.0496 221813.5246 266036.2171 233417.709 225888.6582 258220.5694 213714.5151 1.217615925 1.46284809 1.273696353 1.091517108 1.037896394 1.244820535 1.09219399 1.056964512 1.20825003 1 17.70532537 -5.136457835 4.077272827 1.109761342 1.345611557 0.550816284 0.089206903 0.160639203 4.514430863 0.023542525 0.043140554 7.30E-06 5.136457835 0.235850215 KLITSEEERS(ph)PAK ddPTM_HeLa_A486_30min_R1 2 KLITSEEERSPAK 13 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KLITSEEERS(1)PAK;KLITSEEERS(1)PAK ; 141.13 3.00E-07 684980000 739120 676300 318180 371300 636750 729460 1009650 947640 521220 1153640 TRUE FALSE FALSE 687311.5048 622707.525 441387.8172 864405.1645 556882.8775 639466.6418 757024.891 731883.0588 566399.7693 864761.0351 0.794799346 0.720092025 0.510415941 0.999588475 0.643973138 0.739472081 0.875415127 0.846341393 0.654978365 1 19.72194199 -14 0.185509546 2.010153613 0.709298976 0.237359385 0.130223717 196.9564234 1.913318812 73.59078928 0.370367248 1.00E-14 14 -1.300854638 KLITSEEERS(ph)PAKR ddPTM_HeLa_A485_30min_R1 4 KLITSEEERSPAKR 14 3 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KLITSEEERS(1)PAKR;KLITSEEERS(1)PAKR;KLITSEEERS(1)PAKR;KLITSEEERS(1)PAKR ;;; 177.07 6.18E-13 6560270000 3801590 3849567 2643442 4510570 4997070 5432870 7775130 8842660 3695385 6575600 TRUE FALSE FALSE 4647240.58 4299740.374 3621361.199 4756971.018 4499544.165 5717326.672 6113909.959 6673983.77 4437014.873 4936423.935 0.941418452 0.871023322 0.733600122 0.963647183 0.911498734 1.158191992 1.238530167 1.351987564 0.898831813 1 22.23503487 -6.207492055 3.441200192 1.160462682 0.872942873 0.462822682 0.130239737 0.201984661 4.840381948 0.045568219 0.044195483 6.20E-07 6.207492055 -0.287519809 KLITSEEERS(ph)PAKR ddPTM_HeLa_A486_30min_R1 4 KLITSEEERSPAKR 14 3 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KLITSEEERS(1)PAKR;KLITSEEERS(1)PAKR;KLITSEEERS(1)PAKR;KLITSEEERS(1)PAKR ;;; 144.25 5.37E-07 9052900000 7899200 6509200 3394980 3684900 7330300 7535700 9945700 9666000 5000150 11095400 TRUE FALSE FALSE 7345506.872 5993387.286 4709607.177 8578633.425 6410865.422 6606021.951 7457180.665 7465262.807 5433567.028 8317039.621 0.883187673 0.720615454 0.566260039 1.031452754 0.770810975 0.794275638 0.896614782 0.897586539 0.653305416 1 22.98763867 -14 0.242524267 2.097987322 0.785402825 0.161130926 0.128912168 328.3250504 3.273890895 178.869948 0.199734261 1.00E-14 14 -1.312584496 KLIYFQLHR ddPTM_HeLa_A485_30min_R1 2 KLIYFQLHR 9 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 0 ; ; 164.57 1.42E-06 207280000 336900 463800 458610 382530 558510 339400 485280 443930 287270 503810 FALSE FALSE TRUE 411842.2427 518037.3755 628268.9234 403426.6453 502902.7834 357170.4592 381595.9636 335055.4714 344922.454 378219.4389 1.088897609 1.369674115 1.661122773 1.066647041 1.329658742 0.944347176 1.008927422 0.885875862 0.911963846 1 18.52886399 -6.18956942 1.493139088 0.929134508 1.342645176 0.530649278 0.161855079 0.307396989 1.374751833 0.070784973 0.067861094 6.46E-07 6.18956942 0.413510667 KLIYFQLHR ddPTM_HeLa_A486_30min_R1 2 KLIYFQLHR 9 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 0 ; ; 155.07 1.07E-05 144790000 447790 436730 359900 151593 428250 410710 541840 437390 355470 494270 FALSE FALSE TRUE 416402.2334 402121.9243 499262.9185 352916.1651 374534.8917 360040.776 406265.901 337805.8452 386282.4258 370501.5748 1.123887891 1.08534471 1.347532514 0.952536208 1.010886099 0.971765845 1.096529485 0.911752792 1.042593209 1 18.49912015 -5.2924491 24.99945566 0.997880202 1.175564087 0.54096546 0.079021317 497.6582711 401201.7145 0.021506783 0.031903559 5.10E-06 5.2924491 0.177683885 KLKDVLLQVDDERR ddPTM_HeLa_A485_30min_R1 1 KLKDVLLQVDDERR 14 3 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 116.86 0.0001058 365480000 172040 308810 179240 123900 267530 323180 359720 590790 192150 165640 FALSE FALSE TRUE 210309.7045 344922.6432 245548.3348 130668.3433 240893.7738 340101.2051 282862.8834 445897.8262 230712.7425 124348.9964 1.691285902 2.773827319 1.974670821 1.050819444 1.93723939 2.73505388 2.274750031 3.585857861 1.855364733 1 16.92403534 -6.182439667 7.992195593 2.450187959 1.891180444 0.049693927 0.734308281 0.720014035 66.24228752 0.238772901 0.238812938 6.57E-07 6.182439667 -0.559007515 KLLAPDMFTES(ph)DDMFAAYFDSAR ddPTM_HeLa_A485_30min_R1 2 KLLAPDMFTESDDMFAAYFDSAR 23 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 KLLAPDMFTES(1)DDMFAAYFDSAR;KLLAPDMFT(0.032)ES(0.968)DDMFAAYFDSAR ; 200.94 5.66E-29 170917000 34546 57207 39086 26563.5 60056 48449 68410 88740 42280 42668 TRUE FALSE FALSE 42230.63852 63896.86102 53545.5379 28014.59674 54076.61377 50985.71472 53793.64464 66976.37586 50765.20818 32031.65285 1.318403353 1.994803744 1.67164455 0.874591045 1.688224271 1.591729124 1.679390224 2.090943486 1.584845104 1 14.96721062 KLLAPDMFTES(ph)DDMFAAYFDSAR ddPTM_HeLa_A486_30min_R1 1 KLLAPDMFTESDDMFAAYFDSAR 23 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 KLLAPDMFT(0.024)ES(0.976)DDMFAAYFDSAR 128.43 1.76E-06 40451000 15556 15005 16563 6573.8 26686 14085 20012 21787 13173 17110 TRUE FALSE FALSE 14465.60473 13815.94915 22976.63717 15304.13862 23338.79304 12347.33591 15004.78593 16826.57571 14314.84625 12825.54463 1.127874499 1.077221245 1.791474579 1.193254482 1.819711654 0.962714353 1.169914133 1.311957986 1.116119951 1 13.64673247 -6.338109579 25 1.135249729 1.393958067 0.24678631 0.251305904 204.4447216 66662.14358 0.088212006 0.077795682 4.59E-07 6.338109579 0.258708339 KLLEDTLFPS(ph)SK ddPTM_HeLa_A485_30min_R1 2 KLLEDTLFPSSK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KLLEDTLFPS(0.729)S(0.271)K;KLLEDTLFPS(0.807)S(0.193)K ; 60.489 0.014387 134500000 343900 259320 180888 418950 399470 346710 512340 529660 238670 523040 TRUE FALSE FALSE 420399.3686 289645.2182 247805.9986 441836.1777 359697.3642 364863.1995 402874.3736 399760.0545 286568.8798 392655.7538 1.070656331 0.73765688 0.631102425 1.12525074 0.916062889 0.929219032 1.026024373 1.018092949 0.729822184 1 18.58290551 -5.264238015 24.99866222 0.96345065 0.805590386 0.193046898 0.140619001 388.545882 3470671.661 0.038852894 0.06065094 5.44E-06 5.264238015 -0.157860265 KLLEDTLFPS(ph)SK ddPTM_HeLa_A486_30min_R1 1 KLLEDTLFPSSK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KLLEDTLFPS(0.981)S(0.019)K 84.14 0.0021742 71115000 148150 138300 68957 85739 151930 201610 218290 199920 109010 229210 TRUE FALSE FALSE 137765.45 127340.6043 95658.99713 199604.725 132873.5227 176737.408 163671.5332 154402.5802 118459.0746 171814.3241 0.801827501 0.741152433 0.556757986 1.161746706 0.773355327 1.028653513 0.952607031 0.898659533 0.689459829 1 17.39049079 -5.246144848 24.99643336 0.923613397 0.704036637 0.37308984 0.136042719 898.5955533 1468606.629 0.035942242 0.061955405 5.67E-06 5.246144848 -0.21957676 KLLEGEESRIS(ph)LPLPNFSSLNLR ddPTM_HeLa_A485_30min_R1 3 KLLEGEESRISLPLPNFSSLNLR 23 2 P08670;B0YJC4 P08670 VIM Vimentin 1 0 KLLEGEES(0.001)RIS(0.999)LPLPNFSSLNLR;KLLEGEES(0.043)RIS(0.957)LPLPNFSSLNLR;KLLEGEES(0.131)RIS(0.868)LPLPNFSSLNLR ;; 207.9 2.24E-29 1805672000 255026 375831 326738 221849 477156 510415 618672 914482 324850 388456 TRUE FALSE FALSE 311755.6539 419781.1662 447611.9829 233968.0491 429648.6732 537139.5401 486487.6731 690203.8556 390044.4153 291621.0682 1.069043659 1.439474757 1.53490962 0.802301598 1.473311499 1.84190924 1.668218542 2.366783237 1.33750424 1 18.15373543 -6.000855 24.99929463 1.721859384 1.236699128 0.207936868 0.380641952 43.14582501 1261605.05 0.114620127 0.128435131 9.98E-07 6.000855 -0.485160256 KLLEGEESRIS(ph)LPLPNFSSLNLR ddPTM_HeLa_A486_30min_R1 3 KLLEGEESRISLPLPNFSSLNLR 23 2 P08670;B0YJC4 P08670 VIM Vimentin 1 0 KLLEGEES(0.006)RIS(0.994)LPLPNFSSLNLR;KLLEGEESRIS(1)LPLPNFSSLNLR;KLLEGEES(0.145)RIS(0.855)LPLPNFSSLNLR ;; 285.75 1.06E-75 1812412600 539603 547920 508855 329413 936734 603138 815828 894602 464144 696804 TRUE FALSE FALSE 501779.6162 504500.8237 705897.2836 766890.1116 819240.087 528728.9658 611699.2055 690920.6536 504376.3756 522319.743 0.960675186 0.965885036 1.351465827 1.468238798 1.568464715 1.012270688 1.171120207 1.322792529 0.965646776 1 18.99457371 -7.771813491 24.86068723 0.982823157 1.233339474 0.197440306 0.197142781 387.1866004 927826.3065 0.199726586 0.053870114 1.69E-08 7.771813491 0.250516317 KLLLDPSS(ph)PPTK ddPTM_HeLa_A485_30min_R1 2 KLLLDPSSPPTK 12 1 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 KLLLDPS(0.002)S(0.998)PPTK;KLLLDPS(0.206)S(0.794)PPT(0.001)K ; 125.28 2.49E-05 2038100000 2555700 1950400 1137100 2651300 2063900 2407900 4035300 3514200 1990500 5066000 TRUE FALSE FALSE 3124206.648 2178482.314 1557760.609 2796133.806 1858410.869 2533973.921 3173125.19 2652336.94 2389975.092 3803139.433 0.821480964 0.572811582 0.409598606 0.735217274 0.488651784 0.66628478 0.834343638 0.697407231 0.628421633 1 21.8587594 -6.543516358 7.936024578 0.763266802 0.59776332 0.26654632 0.141598396 0.274649096 80.38559572 0.052517816 0.041184415 2.86E-07 6.543516358 -0.165503482 KLLLDPSS(ph)PPTK ddPTM_HeLa_A486_30min_R1 2 KLLLDPSSPPTK 12 1 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 KLLLDPS(0.003)S(0.997)PPTK;KLLLDPS(0.048)S(0.952)PPTK ; 120.77 6.59E-05 2147730000 1804940 1713360 1150560 778210 1982050 2295810 2540750 2264560 2066080 3164600 TRUE FALSE FALSE 1678423.027 1577587.114 1596087.645 1811712.209 1733442.807 2012576.304 1905027.477 1748969.123 2245169.478 2372163.562 0.707549451 0.665041458 0.67284047 0.763738318 0.730743375 0.848413801 0.803075938 0.737288588 0.94646487 1 21.17777206 -7.540940261 0.204644323 1.080787052 0.595743531 0.774597864 0.050961873 1.294089726 0.274257982 0.257467022 0.237954697 2.88E-08 7.540940261 -0.485043521 KLLMT(ph)PR ddPTM_HeLa_A485_30min_R1 2 KLLMTPR 7 1 Q13123;D6RCQ4;D6RAY9;D6REL4;E7EQZ7 Q13123 IK Protein Red 1 0 KLLMT(1)PR;KLLMT(1)PR ; 79.148 0.011624 728570000 1270700 1485820 1123430 1177900 1753580 1707920 1928690 2096270 1173570 1534100 TRUE FALSE FALSE 1553362.831 1659573.724 1539033.507 1242245.694 1578987.418 1797344.05 1516609.626 1582156.496 1409094.734 1151677.103 1.348783289 1.441006094 1.336341152 1.078640611 1.371033091 1.560631922 1.31687052 1.373784797 1.223515455 1 20.13530485 -8.0779426 2.834420274 1.000269368 1.35282965 0.477682879 0.113556109 0.325685104 6.024799229 0.116466786 0.031260176 8.36E-09 8.0779426 0.352560282 KLLMT(ph)PR ddPTM_HeLa_A486_30min_R1 2 KLLMTPR 7 1 Q13123;D6RCQ4;D6RAY9;D6REL4;E7EQZ7 Q13123 IK Protein Red 1 0 KLLMT(1)PR;KLLMT(1)PR ; 73.039 0.016073 601050000 828260 888080 657510 325110 1000590 810750 977790 991070 706070 988390 TRUE FALSE FALSE 770203.2511 817705.3065 912115.4807 756872.5101 875086.6721 710727.9081 733136.6 765424.9959 767272.7161 740890.7107 1.03956392 1.103678714 1.23110665 1.021571062 1.181127877 0.959288459 0.98953407 1.033114581 1.035608498 1 19.49890122 -6.26766934 24.99764314 1.004705342 1.115972283 0.461758212 0.06039804 483.5986099 1940427.904 0.020752003 0.018751081 5.40E-07 6.26766934 0.111266942 KLLS(ph)PSNEK ddPTM_HeLa_A485_30min_R1 1 KLLSPSNEK 9 1 Q14694;Q14694-3;Q14694-2;H3BNA1;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 KLLS(0.973)PS(0.027)NEK 121.21 0.00023747 162650000 383040 325370 226810 491860 468490 452360 647990 645520 323050 711990 TRUE FALSE FALSE 468245.9265 363419.1912 310716.4574 518729.0663 421845.4906 476044.8701 509541.6429 487205.2079 387883.1718 534503.9962 0.876038215 0.679918567 0.58131737 0.970486788 0.789227945 0.890629207 0.953298098 0.911509009 0.725688067 1 19.02784121 -5.270163264 24.98772958 0.886132566 0.709174099 0.389051983 0.102682349 637.0299071 1824636.74 0.028536738 0.043057943 5.37E-06 5.270163264 -0.176958467 KLLS(ph)PSNEK ddPTM_HeLa_A486_30min_R1 2 KLLSPSNEK 9 1 Q14694;Q14694-3;Q14694-2;H3BNA1;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 KLLS(0.979)PS(0.021)NEK;KLLS(0.919)PS(0.081)NEK ; 155.86 2.23E-05 572820000 1536560 1412920 704620 710160 1334980 1586990 2038230 1989580 1121080 2303800 TRUE FALSE FALSE 1428855.079 1300955.073 977467.7344 1653288.369 1167534.36 1391203.309 1528243.296 1536596.066 1218256.117 1726913.485 0.827403973 0.753341198 0.566020095 0.957366066 0.676081559 0.805601046 0.88495649 0.88979331 0.705452895 1 20.71976438 -14 0.136118832 1.73100056 0.704561097 0.261974454 0.109211736 187.6009136 1.580676525 37.20871551 0.715986466 1.00E-14 14 -1.026439463 KLMHQAALLGQALQDSR ddPTM_HeLa_A485_30min_R1 2 KLMHQAALLGQALQDSR 17 1 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9;A0A0B4J225;E9PIZ5 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 156.49 8.09E-11 136398500 84429 133347 116925 75604 153734 152953 160312 234570 110799 100732 FALSE FALSE TRUE 103209.9398 148940.7717 160180.4232 79734.05508 138427.7032 160961.3826 126060.0316 177041.3397 133035.343 75621.36624 1.364825114 1.969559386 2.118190019 1.054385276 1.830536924 2.128517251 1.666989607 2.341155001 1.759229562 1 16.20650629 -5.974034498 24.99941631 1.869715683 1.655847098 0.010669465 0.430995382 759.4179299 731159.1698 0.12977881 0.147151539 1.06E-06 5.974034498 -0.213868586 KLMVALAK ddPTM_HeLa_A485_30min_R1 2 KLMVALAK 8 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 117.04 0.00095554 0 440230 503890 306320 452370 479410 591710 717390 839500 443770 790350 FALSE FALSE TRUE 538157.6447 562815.5522 419640.515 477081.8276 431678.2571 622691.0206 564113.766 633611.3087 532830.5685 593330.2903 0.907011918 0.948570402 0.707262922 0.80407462 0.727551356 1.049484631 0.950758414 1.067889705 0.898033654 1 19.17847591 -6.268835862 24.99967731 0.994821711 0.819073421 0.537891457 0.080789099 478.2590995 1616483.308 0.029063167 0.026129627 5.38E-07 6.268835862 -0.17574829 KLMVALAK ddPTM_HeLa_A486_30min_R1 2 KLMVALAK 8 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 117.04 0.00095554 0 423370 443430 311820 157226 507740 484530 521600 549390 406250 643790 FALSE FALSE TRUE 393693.9493 408290.9919 432565.0548 366030.0738 444054.5147 424753.6149 391090.1631 424305.8901 441464.0771 482580.7936 0.815809403 0.846057276 0.896357792 0.758484545 0.920166158 0.88017099 0.810413859 0.879243218 0.914798274 1 18.88041097 -8.021559164 1.684237023 0.999252479 0.849137283 0.53468537 0.044079634 0.309643794 1.987719659 0.041060532 0.011841398 9.52E-09 8.021559164 -0.150115196 KLNCQVIGASVDSHFCHLAWVNTPK ddPTM_HeLa_A485_30min_R1 1 KLNCQVIGASVDSHFCHLAWVNTPK 25 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 102.94 1.32E-07 73298000 85241 74128 73029 60702 103300 107570 142320 166310 59367 117100 FALSE FALSE TRUE 104202.5664 82796.62477 100045.4661 64017.99655 93015.08929 113202.1989 111912.1694 125522.2117 71281.41235 87909.12507 1.185344141 0.941843349 1.138055532 0.728229254 1.058082301 1.287718411 1.273043831 1.427863281 0.810853393 1 16.42372531 -6.011968689 24.60323197 1.191396945 0.990414229 0.122383679 0.196010783 793.3373525 1630813.59 0.061444028 0.064783998 9.73E-07 6.011968689 -0.200982717 KLNCQVIGASVDSHFCHLAWVNTPK ddPTM_HeLa_A486_30min_R1 2 KLNCQVIGASVDSHFCHLAWVNTPK 25 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 120.67 1.56E-11 122076000 161205 201480 193505 37564 277690 262970 313570 251160 269450 250230 FALSE FALSE TRUE 149905.362 185513.991 268435.3182 87450.89038 242859.5308 230527.4351 235111.4694 193976.3508 292806.143 187570.7793 0.799193577 0.989034602 1.4311148 0.466228752 1.294762072 1.229015713 1.253454671 1.034150157 1.561043485 1 17.51707557 KLNDS(ph)DHQSSTS(ph)PLMEGT(ph)PTIK ddPTM_HeLa_A485_30min_R1 1 KLNDSDHQSSTSPLMEGTPTIK 22 1 Q96JC1-2;Q96JC1 Q96JC1-2 VPS39 Vam6/Vps39-like protein 3 0 KLNDS(0.304)DHQS(0.305)S(0.307)T(0.307)S(0.777)PLMEGT(0.502)PT(0.498)IK 42.64 0.020762 270320000 0 0 4421.7 0 7309.1 3997.2 5675.8 0 5270.1 6105.7 TRUE FALSE FALSE 0 0 6057.470832 0 6581.38034 4206.487211 4463.118963 0 6327.76073 4583.661357 0 0 1.321535419 0 1.435834768 0.917713348 0.973701723 0 1.38050354 1 12.16228475 -4.738078969 24.64881209 0.8362541 1.39E-06 0.342649843 0.483961227 221.1862307 233380.9904 0.116490481 0.307769471 1.83E-05 4.738078969 -0.836252714 KLNDS(ph)DHQSSTS(ph)PLMEGT(ph)PTIK ddPTM_HeLa_A486_30min_R1 1 KLNDSDHQSSTSPLMEGTPTIK 22 1 Q96JC1-2;Q96JC1 Q96JC1-2 VPS39 Vam6/Vps39-like protein 3 0 KLNDS(0.262)DHQS(0.267)S(0.268)T(0.268)S(0.935)PLMEGT(0.504)PT(0.496)IK 49.973 0.012516 257020000 6349.7 0 0 0 0 0 7379.7 0 0 0 TRUE FALSE FALSE 5904.61882 0 0 0 0 0 5533.221005 0 0 0 0 KLNDSDHQSST(ph)S(ph)PLMEGT(ph)PTIK ddPTM_HeLa_A485_30min_R1 1 KLNDSDHQSSTSPLMEGTPTIK 22 1 Q96JC1-2;Q96JC1 Q96JC1-2 VPS39 Vam6/Vps39-like protein 3 0 KLNDS(0.086)DHQS(0.355)S(0.383)T(0.408)S(0.767)PLMEGT(0.547)PT(0.453)IK 41.908 0.034442 139770000 12810 7983.2 9430.2 15477 11071 6716.3 16038 10546 8162.7 20811 TRUE FALSE FALSE 15659.54031 8916.765795 12918.8234 16322.46932 9968.732367 7067.955083 12611.35028 7959.576965 9800.879017 15623.2007 1.002326003 0.570738735 0.82689992 1.044758346 0.638072349 0.452401222 0.807219374 0.509471594 0.627328497 1 13.93140243 -4.242152862 23.24512258 0.709671662 1.002326704 0.165799239 0.189026199 3026.438618 3647472.796 0.047905618 1.523343715 5.73E-05 4.242152862 0.292655042 KLNFSIS(ph)PPTFVSGVGMLSK ddPTM_HeLa_A485_30min_R1 1 KLNFSISPPTFVSGVGMLSK 20 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 KLNFS(0.038)IS(0.962)PPTFVSGVGMLSK 107.17 1.99E-05 61648000 92013 102760 80946 75492 117860 108990 147940 160250 81635 120190 TRUE FALSE FALSE 112480.9744 114776.8881 110891.2938 79615.9368 106125.4446 114696.5479 116331.4104 120948.4362 98018.3957 90228.84493 1.2466188 1.272064252 1.229000481 0.882377879 1.176180906 1.271173846 1.289292914 1.340463089 1.086331048 1 16.4613011 -7.993668509 23.75277008 0.999999977 1.208387566 0.261097345 0.118824476 98.29388446 368748.0133 0.124706083 0.032198972 1.01E-08 7.993668509 0.208387589 KLNLTLS(ph)PAK ddPTM_HeLa_A486_30min_R1 2 KLNLTLSPAK 10 1 A0A087WTW5;Q9UKL3 A0A087WTW5 CASP8AP2 CASP8-associated protein 2 1 0 KLNLT(0.001)LS(0.999)PAK;KLNLTLS(1)PAK ; 100.45 0.00095753 408500000 873580 765200 395240 324180 707990 796250 956310 845630 616130 1154500 TRUE FALSE FALSE 812346.5532 704562.7652 548287.5129 754707.4232 619187.2925 698016.7707 717031.1232 653098.509 669536.6445 865405.6855 0.938688718 0.814141595 0.633561256 0.872085122 0.715487895 0.806577519 0.828549125 0.754673236 0.773667952 1 19.72301707 -10.33406422 9.616245848 1.000000083 0.7893345 0.379693386 0.07922772 1.38E-07 9.56E-09 0.074752264 0.01813008 4.63E-11 10.33406422 -0.210665583 KLNS(ph)GGGLSEELGSAR ddPTM_HeLa_A486_30min_R1 2 KLNSGGGLSEELGSAR 16 1 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 KLNS(1)GGGLSEELGSAR;KLNS(1)GGGLSEELGSAR ; 116.35 6.71E-05 472640000 280910 268550 179015 118087 271120 258240 321360 278710 201311 316590 TRUE FALSE FALSE 261219.6596 247269.12 248334.4022 274912.5038 237113.6015 226380.9744 240952.329 215253.8172 218760.7996 237313.8033 1.100735212 1.041950011 1.046438929 1.158434528 0.999156384 0.953930918 1.015332128 0.907042971 0.921820798 1 17.85643649 -5.961590103 7.906114401 0.959335641 1.080913525 0.666361381 0.042515999 0.145861439 25.6775508 0.013555337 0.015321604 1.09E-06 5.961590103 0.121577884 KLNSSSSSSSNSSNEREDFDS(ph)TSSSSSTPPLQPR ddPTM_HeLa_A486_30min_R1 1 KLNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 34 2 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 KLNSSSSSS(0.001)S(0.001)NS(0.003)S(0.003)NEREDFDS(0.43)T(0.43)S(0.047)S(0.015)S(0.013)S(0.013)S(0.034)T(0.011)PPLQPR 56.108 0.0075274 782390000 308610 311990 252310 99260 367900 315610 402860 339370 203630 306590 TRUE FALSE FALSE 286978.0327 287266.7762 350011.1891 231082.2963 321754.5515 276673.2471 302060.167 262102.8594 221280.8124 229817.8684 1.248719408 1.24997581 1.522993801 1.005501869 1.400041492 1.203880486 1.314345873 1.140480769 0.962852949 1 17.81013145 -7.547710451 3.02260911 0.981518544 1.277273122 0.468060314 0.126257394 0.222315133 4.000394365 0.093830702 0.032010917 2.83E-08 7.547710451 0.295754579 KLNSSSSSSSNSSNEREDFDSTS(ph)SSSSTPPLQPR ddPTM_HeLa_A486_30min_R1 1 KLNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 34 2 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 KLNSSSSSSSNSSNEREDFDS(0.026)T(0.113)S(0.449)S(0.36)S(0.02)S(0.025)S(0.004)T(0.002)PPLQPR 93.656 6.00E-05 754120000 547990 530370 520340 235830 775120 581960 766440 804890 501040 654760 TRUE FALSE FALSE 509578.7308 488341.5496 721829.5832 549024.1582 677897.2219 510163.6921 574668.6054 621634.1176 544470.5506 490803.8342 1.038253362 0.994983159 1.470708933 1.11862239 1.381197893 1.039445205 1.170872282 1.266563287 1.109344534 1 18.90478699 -8.007787059 18.8588756 0.999999986 1.187302664 0.136192592 0.144999301 25.23755532 61126.92119 0.137624406 0.035535271 9.82E-09 8.007787059 0.187302678 KLNSSSSSSSNSSNEREDFDSTSSSSS(ph)TPPLQPR ddPTM_HeLa_A485_30min_R1 1 KLNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 34 2 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 KLNSSSSSSSNSSNEREDFDS(0.001)T(0.007)S(0.034)S(0.16)S(0.106)S(0.106)S(0.478)T(0.106)PPLQPR 244.51 2.40E-51 1802100000 1114500 1334300 1312700 1123000 1925400 1535500 1919400 2408000 1476100 1662400 TRUE FALSE FALSE 1362416.68 1490334.778 1798322.356 1184346.646 1733700.416 1615896.406 1509304.51 1817434.224 1772339.73 1247994.274 1.091685041 1.194183987 1.440970037 0.949000064 1.389189399 1.294794727 1.209384162 1.456284105 1.42015053 1 20.25117988 KLNTTTMSNATANSSIRPIFGGTVYHS(ph)PVSR ddPTM_HeLa_A485_30min_R1 1 KLNTTTMSNATANSSIRPIFGGTVYHSPVSR 31 2 O43663-2;O43663-4;O43663;O43663-3;G3V3N7 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 KLNTTTMSNATANSSIRPIFGGTVYHS(0.962)PVS(0.038)R 244.25 6.77E-51 5196200000 669850 859950 831490 627720 1192600 957840 1008900 1224900 772110 853860 TRUE FALSE FALSE 818855.8215 960513.6719 1139092.752 662010.7541 1073860.557 1007991.021 793340.273 924491.3544 927065.3948 641008.4161 1.277449408 1.498441593 1.777032444 1.032764528 1.675267484 1.572508248 1.237644082 1.442245267 1.446260878 1 19.28998377 -11.94464022 0.355580085 3.55E-10 1.462098444 0.291370363 0.205747204 113.2494206 3.597400232 85.28380894 0.153446082 1.14E-12 11.94464022 1.462098443 KLNTTTMSNATANSSIRPIFGGTVYHS(ph)PVSR ddPTM_HeLa_A486_30min_R1 1 KLNTTTMSNATANSSIRPIFGGTVYHSPVSR 31 2 O43663-2;O43663-4;O43663;O43663-3;G3V3N7 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 KLNTTTMSNATANSSIRPIFGGTVYHS(1)PVSR 345.39 6.94E-148 2325600000 687030 755620 579370 108840 751630 597460 679910 716930 609980 679510 TRUE FALSE FALSE 638872.7448 695741.9193 803717.5801 253385.0205 657353.5567 523751.4597 509789.3266 553700.6895 662853.5575 509356.2731 1.254274814 1.365923924 1.577908475 0.497461274 1.290557497 1.028261528 1.000850198 1.087059724 1.301355441 1 18.95831559 KLNVTEQEK ddPTM_HeLa_A485_30min_R1 4 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;; ;;; 228.64 5.42E-18 1725380000 1840870 1597920 1242700 2309050 1829150 1823640 2350150 2170590 1550070 2877310 FALSE FALSE TRUE 2250365.181 1784782.844 1702426.443 2435187.555 1647033.403 1919122.971 1848021.254 1638249.399 1861154.831 2160049.57 1.041811823 0.826269392 0.788142303 1.127375773 0.762497966 0.888462467 0.855545761 0.758431391 0.861625982 1 21.04263299 KLNVTEQEK ddPTM_HeLa_A486_30min_R1 2 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 125.54 0.00071424 492825000 480988 481427 306099 214593 722691 533668 549292 530352 412344 574599 FALSE FALSE TRUE 447273.225 443276.9712 424628.7304 499583.3489 632044.356 467829.4681 411853.3318 409602.4271 448086.3099 430715.6704 1.03844196 1.029163789 0.985867846 1.159891277 1.467428281 1.086167744 0.956206983 0.950981019 1.040329713 1 18.71637629 -6.617353115 5.78992325 0.984707393 1.137388179 0.236226907 0.126315949 0.347908216 17.46118681 0.054734241 0.04208255 2.41E-07 6.617353115 0.152680786 KLNVTEQEK(ac)IDK ddPTM_HeLa_A485_30min_R1 2 KLNVTEQEKIDK 12 2 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; KLNVTEQEK(1)IDK;KLNVTEQEK(1)IDK 157.2 3.71E-05 113808000 113141 98386 120551 164476 140915 145843 255253 231906 104013 345300 FALSE TRUE FALSE 138308.8251 109891.3869 165147.8314 173460.9074 126885.0078 153479.114 200716.1113 175030.6899 124887.455 259223.0648 0.533551385 0.423925961 0.637087721 0.669156919 0.489481937 0.592073526 0.774298813 0.67521264 0.481776015 1 17.98383456 -14 0.182339557 2.655861329 0.510566206 0.602360065 0.100936836 96.26611031 0.930296891 57.96474867 0.317600768 1.00E-14 14 -2.145295123 KLNVTEQEK(ac)IDK ddPTM_HeLa_A486_30min_R1 2 KLNVTEQEKIDK 12 2 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; KLNVTEQEK(1)IDK;KLNVTEQEK(1)IDK 180.3 1.56E-08 90504000 143834 140560 111424 66705 130896 171272 248620 217770 125061 370630 FALSE TRUE FALSE 133751.9794 129421.5137 154570.3568 155292.6111 114477.8031 150142.202 186412.6464 168188.5249 135901.3882 277821.8356 0.481430767 0.465843563 0.556365041 0.558964744 0.412054736 0.540426211 0.670979104 0.605382671 0.489167411 1 18.08380047 -14 0.234603823 3.579909967 0.484293334 0.81449075 0.067698565 70.24111585 0.702588068 86.17074421 0.118312842 1.00E-14 14 -3.095616633 KLPEPLSWRS(ph)DEEDEDS(ph)DFGEEQR ddPTM_HeLa_A486_30min_R1 1 KLPEPLSWRSDEEDEDSDFGEEQR 24 2 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 2 0 KLPEPLS(0.479)WRS(0.521)DEEDEDS(1)DFGEEQR 63.403 0.010976 27950000 35292 40951 32090 15748 49668 37478 50035 42174 41465 41716 TRUE FALSE FALSE 32818.21305 37705.89362 44516.1074 36662.13986 43438.1763 32854.34541 37515.71378 32571.90085 45059.21959 31270.04207 1.049509718 1.205815251 1.423602415 1.172436538 1.389130728 1.050665213 1.199733396 1.04163278 1.440970865 1 14.93249354 -6.274744796 24.91959456 1.152523322 1.251296573 0.100273341 0.151346917 1954.977413 3661446.702 0.051482576 0.045632701 5.31E-07 6.274744796 0.098773251 KLPFQR ddPTM_HeLa_A485_30min_R1 1 KLPFQR 6 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;A0A590UJL8;P0DPK2;P0DPK5;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 105.42 0.024841 341970000 221660 443940 367690 296450 555770 404610 538160 894100 578410 975120 FALSE FALSE TRUE 270967.5023 495854.9212 503713.8319 312644.3128 500435.5874 425794.754 423177.7196 674820.5731 694491.5815 732040.5298 0.370153689 0.677359929 0.688095551 0.42708607 0.683617323 0.581654617 0.578079631 0.921834988 0.948706463 1 19.481564 -7.288734987 4.441297241 0.960944628 0.578547654 0.754544231 0.10063747 0.102735279 5.032713746 0.055116083 0.026472393 5.14E-08 7.288734987 -0.382396974 KLPFQR ddPTM_HeLa_A486_30min_R1 2 KLPFQR 6 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;A0A590UJL8;P0DPK2;P0DPK5;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 ; ; 109.88 0.02204 519330000 590530 608960 511600 228672 2254300 525320 659590 739100 521480 527630 FALSE FALSE TRUE 549136.8965 560703.7918 709705.2211 532359.9724 1971544.673 460511.3595 494553.6056 570823.0644 566682.3063 395508.0137 1.388434311 1.417679977 1.794414264 1.346015641 4.984841281 1.164354055 1.250426258 1.443265483 1.432796016 1 18.5933474 KLPFTIS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 KLPFTISPSR 10 1 Q6UB98-2;Q6UB98;J3KSU9;F5GYX2 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 0 KLPFT(0.06)IS(0.933)PS(0.007)R 123.02 7.59E-05 130480000 229460 290810 225430 225280 227980 266500 279990 273470 222390 287180 TRUE FALSE FALSE 280502.5854 324817.6998 308825.9379 237586.476 205281.5107 280453.5279 220167.8492 206401.0537 267021.6331 215591.3112 1.301084834 1.506636321 1.432460039 1.102022501 0.952178961 1.300857286 1.021227841 0.957371856 1.238554707 1 17.71793951 -5.274549928 6.66904037 1.080465889 1.42353636 0.626752159 0.117240585 0.092900927 21.69039468 0.032022279 0.050173912 5.31E-06 5.274549928 0.343070471 KLPFTIS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 KLPFTISPSR 10 1 Q6UB98-2;Q6UB98;J3KSU9;F5GYX2 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 0 KLPFT(0.006)IS(0.975)PS(0.019)R 106.32 0.00054305 163380000 352380 358000 217540 90799 245850 263060 287740 250080 280730 352830 TRUE FALSE FALSE 327679.9817 329630.7762 301777.3139 211384.6607 215013.2005 230606.3318 215744.4086 193142.2432 305063.9024 264479.0715 1.238963748 1.246339736 1.141025308 0.799249103 0.812968676 0.871926578 0.815733386 0.730274203 1.153451957 1 18.01279404 -5.124854915 3.958598654 0.866425335 1.234196845 0.633872716 0.114167225 0.13537274 3.643645509 0.030675297 0.056761916 7.50E-06 5.124854915 0.36777151 KLPFTISPS(ph)R ddPTM_HeLa_A486_30min_R1 1 KLPFTISPSR 10 1 Q6UB98-2;Q6UB98;J3KSU9;F5GYX2 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 0 KLPFT(0.002)IS(0.18)PS(0.818)R 104.94 0.00058206 127880000 274940 260840 153390 68584 191150 204950 207330 198520 223730 279610 TRUE FALSE FALSE 255668.1258 240170.0884 212786.7159 159667.018 167174.1846 179665.3528 155453.8411 153321.3297 243123.0965 209593.836 1.219826549 1.145883357 1.015233654 0.761792527 0.797610215 0.857207236 0.741690901 0.731516406 1.15997255 1 17.67723676 -4.927131906 2.629939197 0.845436022 1.193730997 0.500091982 0.126464397 0.20784556 2.876310629 0.034524878 0.087639551 1.18E-05 4.927131906 0.348294975 KLPPLPLTLALGAFLNHR ddPTM_HeLa_A485_30min_R1 1 KLPPLPLTLALGAFLNHR 18 1 O96008 O96008 TOMM40 Mitochondrial import receptor subunit TOM40 homolog 0 0 84.14 0.0011261 1933200 4247.3 2215 1733.5 3409.5 2783.9 2014.3 3566.8 2626.1 1116.3 6575.9 FALSE FALSE TRUE 5192.097232 2474.024982 2374.793787 3595.752352 2506.725141 2119.765633 2804.724042 1982.044857 1340.331171 4936.64915 1.051745237 0.501154712 0.481053791 0.728379158 0.50777867 0.429393617 0.56814328 0.401495994 0.271506265 1 12.2693164 -10.02269467 4.243120731 1.00003139 0.542333865 0.309624917 0.201832195 269668565.5 455765364.8 119418.5634 0.05011592 9.49E-11 10.02269467 -0.457697525 KLPPLPLTLALGAFLNHRK ddPTM_HeLa_A485_30min_R1 1 KLPPLPLTLALGAFLNHRK 19 2 O96008 O96008 TOMM40 Mitochondrial import receptor subunit TOM40 homolog 0 0 56.851 0.020126 1766700 3757.1 2785.8 1516.6 2527.9 1468.8 2824.7 5033.1 5802.8 1646.1 5605.8 FALSE FALSE TRUE 4592.853933 3111.575077 2077.653451 2665.992776 1322.561115 2972.596924 3957.737068 4379.654202 1976.457171 4208.377227 1.091359849 0.739376465 0.493694681 0.633496626 0.31426867 0.706352298 0.940442564 1.040699055 0.469648291 1 12.03904831 -6.596223518 6.347777482 0.863274765 0.635893007 0.147711196 0.235196261 0.398903295 27.00781401 0.092783132 0.07159123 2.53E-07 6.596223518 -0.227381757 KLPPPPGS(ph)PLGHSPTASPPPTAR ddPTM_HeLa_A485_30min_R1 2 KLPPPPGSPLGHSPTASPPPTAR 23 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 KLPPPPGS(0.5)PLGHS(0.5)PTASPPPTAR;KLPPPPGS(0.91)PLGHS(0.089)PT(0.001)ASPPPTAR ; 134.11 1.40E-06 1727990000 419070 601810 504420 345310 605690 529020 611920 698990 487360 506380 TRUE FALSE FALSE 512290.6757 672186.4444 691025.9487 364173.4109 545385.3769 556718.6692 481178.2931 527561.6065 585168.6817 380148.7852 1.347605716 1.768219367 1.817777606 0.957975995 1.434662948 1.464475728 1.265763069 1.387776647 1.53931488 1 18.53620466 -12.91892797 0.100940701 9.81E-14 1.735911259 0.244499879 0.231793859 214.8923935 1.861297281 50.86093724 4.279475194 1.21E-13 12.91892797 1.735911259 KLPPPPGSPLGHS(ph)PTASPPPTAR ddPTM_HeLa_A486_30min_R1 1 KLPPPPGSPLGHSPTASPPPTAR 23 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 KLPPPPGS(0.167)PLGHS(0.819)PT(0.015)ASPPPTAR 107.15 0.00020276 748180000 296190 272150 236500 49616 300490 206290 271170 227900 218340 233280 TRUE FALSE FALSE 275428.6105 250583.8428 328079.1337 115508.5555 262799.7422 180840.0372 203320.3979 176012.145 237265.887 174865.1696 1.575091318 1.433011751 1.87618343 0.660557821 1.502870714 1.034168426 1.162726679 1.006559199 1.356850467 1 17.41588343 -5.247035239 24.9999917 1.119896854 1.608587108 0.509453423 0.23532307 663.8327999 1152154.089 0.059663552 0.102743517 5.66E-06 5.247035239 0.488690254 KLPS(ph)DSGDLEALEGK ddPTM_HeLa_A486_30min_R1 2 KLPSDSGDLEALEGK 15 1 G3V5V3;O60524-4;O60524-5;O60524-3;O60524;O60524-2 G3V5V3 NEMF Nuclear export mediator factor NEMF 1 0 KLPS(0.975)DS(0.025)GDLEALEGK;KLPS(0.973)DS(0.027)GDLEALEGK ; 146.1 4.51E-08 67738000 190585 161278 76240 97959 130809 211339 239300 203731 128257 335166 TRUE FALSE FALSE 177225.9757 148497.7439 105762.1698 228053.5026 114401.7155 185266.1429 179424.6089 157345.8987 139374.42 251238.252 0.705410001 0.591063434 0.420963643 0.907718075 0.455351502 0.737412163 0.71416119 0.626281617 0.554749999 1 17.93869661 -10.94472603 2.464250836 1.26663098 0.635067248 0.396616836 0.135136747 22393243.23 10335974.95 34233362.55 0.03177885 1.14E-11 10.94472603 -0.631563732 KLPSDPDVLEGEVT(ph)DEDEEAEMSR ddPTM_HeLa_A486_30min_R1 2 KLPSDPDVLEGEVTDEDEEAEMSR 24 1 H3BUD4;A0A0A0MT40;Q15111-2;Q15111 H3BUD4 PLCL1 Phosphoinositide phospholipase C;Inactive phospholipase C-like protein 1 1 0 KLPSDPDVLEGEVT(1)DEDEEAEMSR;KLPSDPDVLEGEVT(1)DEDEEAEMSR ; 182.56 1.70E-20 618900000 824800 811000 489280 315350 743720 853230 922620 943020 710120 1058910 TRUE FALSE FALSE 766985.7793 746733.4064 678742.3194 734150.7369 650435.7027 747967.1576 691770.7175 728314.932 771673.7734 793752.0437 0.966278809 0.940764074 0.855106232 0.924911933 0.819444445 0.942318402 0.87151992 0.917559757 0.972184928 1 19.59832888 -7.812306437 2.771158451 0.998394226 0.90119827 0.383829802 0.042189297 0.257422558 3.754641314 0.039136962 0.010877743 1.54E-08 7.812306437 -0.097195957 KLPSDPDVLEGEVT(ph)DEDEEAEMSRR ddPTM_HeLa_A485_30min_R1 1 KLPSDPDVLEGEVTDEDEEAEMSRR 25 2 H3BUD4;A0A0A0MT40;Q15111-2;Q15111 H3BUD4 PLCL1 Phosphoinositide phospholipase C;Inactive phospholipase C-like protein 1 1 0 KLPSDPDVLEGEVT(1)DEDEEAEMSRR 229.48 1.46E-38 150690000 67232 66989 58242 81944 86278 99575 107940 140290 61150 114130 TRUE FALSE FALSE 82187.52645 74822.78082 79788.13945 86420.39323 77687.85938 104788.593 84877.73721 105883.6575 73422.2441 85679.49141 0.959243865 0.873286939 0.931239648 1.008647365 0.90672643 1.223030054 0.990642402 1.235810995 0.856940709 1 16.3866623 -6.210179014 24.99861599 1.071608259 0.936144771 0.247066369 0.108759971 452.602274 220724.6972 0.033413902 0.033413881 6.16E-07 6.210179014 -0.135463489 KLPSDPDVLEGEVT(ph)DEDEEAEMSRR ddPTM_HeLa_A486_30min_R1 3 KLPSDPDVLEGEVTDEDEEAEMSRR 25 2 H3BUD4;A0A0A0MT40;Q15111-2;Q15111 H3BUD4 PLCL1 Phosphoinositide phospholipase C;Inactive phospholipase C-like protein 1 1 0 KLPSDPDVLEGEVT(1)DEDEEAEMSRR;KLPSDPDVLEGEVT(1)DEDEEAEMSRR;KLPSDPDVLEGEVT(1)DEDEEAEMSRR ;; 208.3 1.12E-28 447710000 144855 136561 88231 58014.1 174398 143728 187289 189902 103261 189934 TRUE FALSE FALSE 134701.4125 125739.409 122396.4061 135059.7567 152523.3766 125996.3007 140427.3113 146665.4601 112211.7466 142373.2901 0.946114348 0.883167123 0.859686575 0.948631281 1.07129207 0.884971476 0.986331854 1.030147298 0.788151672 1 17.11931899 -5.432669199 7.275031745 0.963643757 0.89582896 0.121619527 0.076708266 0.540488409 38.04362767 0.021094129 0.031310905 3.69E-06 5.432669199 -0.067814797 KLPVDSVFNKFEDEDS(ph)DDVPR ddPTM_HeLa_A485_30min_R1 2 KLPVDSVFNKFEDEDSDDVPR 21 2 P49756 P49756 RBM25 RNA-binding protein 25 1 0 KLPVDSVFNKFEDEDS(1)DDVPR;KLPVDSVFNKFEDEDS(1)DDVPR ; 157.11 1.72E-10 1249020000 1508670 1217290 904020 2137800 1877000 1773930 2598500 2687600 1402240 3063700 TRUE FALSE FALSE 1844268.437 1359641.476 1238454.617 2254582.601 1690119.289 1866810.232 2043309.247 2028461.886 1683656.706 2299975.973 0.801864219 0.591154643 0.538464154 0.980263545 0.73484215 0.811665102 0.888404606 0.881949164 0.732032302 1 21.13318736 -5.256482696 24.99934782 0.850180484 0.63856037 0.473200954 0.104650806 366.645672 1849195.216 0.027873395 0.046378858 5.54E-06 5.256482696 -0.211620115 KLPVDSVFNKFEDEDS(ph)DDVPR ddPTM_HeLa_A486_30min_R1 2 KLPVDSVFNKFEDEDSDDVPR 21 2 P49756 P49756 RBM25 RNA-binding protein 25 1 0 KLPVDSVFNKFEDEDS(1)DDVPR;KLPVDSVFNKFEDEDS(1)DDVPR ; 168.11 5.27E-14 1330430000 820500 834470 432530 449250 823830 965190 1240680 1217510 673220 1218880 TRUE FALSE FALSE 762987.1871 768343.5581 600017.1996 1045876.704 720497.5595 846114.6711 930248.7414 940309.5511 731575.2517 913664.5144 0.835084624 0.840947138 0.656715009 1.1447054 0.788579996 0.926067126 1.018151331 1.029162823 0.80070446 1 19.801305 -5.24764445 24.99698404 0.95350312 0.783918762 0.358718623 0.110442232 924.4365715 1675114.718 0.02916395 0.050184885 5.65E-06 5.24764445 -0.169584359 KLQANGPVAK(ac)K ddPTM_HeLa_A485_30min_R1 1 KLQANGPVAKK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 KLQANGPVAK(1)K 113.69 0.0022011 0 6451.4 9006.9 7319.8 7575.9 10710 9190.5 9493.9 15173 9298.3 13507 FALSE TRUE FALSE 7886.491673 10060.17861 10027.69862 7989.752234 9643.674795 9671.700369 7465.450707 11451.79796 11164.38352 10139.95348 0.777764088 0.992132619 0.988929451 0.787947622 0.951057105 0.953820981 0.73624112 1.129373817 1.101029067 1 13.30776341 -7.285232021 24.99483535 1.086401109 0.893752556 0.476866525 0.09198531 700.4519069 735840.181 0.049083537 0.023599791 5.19E-08 7.285232021 -0.192648553 KLQANGPVAK(ac)K ddPTM_HeLa_A486_30min_R1 1 KLQANGPVAKK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 KLQANGPVAK(1)K 113.22 0.0022399 0 18953 22440 14809 8017.5 26643 25296 24488 26211 19077 25761 FALSE TRUE FALSE 17624.49257 20661.77267 20543.4414 18665.14518 23301.1865 22175.23671 18360.84339 20243.32748 20730.60972 19310.27792 0.912700099 1.069988364 1.063860473 0.966591224 1.206672768 1.148364451 0.950832684 1.048318805 1.073553151 1 14.23708131 -4.259387848 24.04188406 1.06153707 0.91270002 0.261163793 0.073522978 155.8397795 1826051.856 0.018809016 0.119464243 5.50E-05 4.259387848 -0.14883705 KLQAQEIAR ddPTM_HeLa_A485_30min_R1 2 KLQAQEIAR 9 1 A0A0A0MR97;Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 A0A0A0MR97 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 0 0 ; ; 80.755 0.030379 470300000 211472 404110 353890 260820 427290 266750 385500 1557090 477430 1624170 FALSE FALSE TRUE 258513.2168 451367.1492 484808.6376 275067.9362 384747.5073 280716.6175 303134.7758 1175211.236 573245.8218 1219294.31 0.212018718 0.370187202 0.397614123 0.225596014 0.315549334 0.23022876 0.248614935 0.96384542 0.470145573 1 20.21761497 -7.251766438 24.93152677 0.787746624 0.28994624 0.732621026 0.145295344 312.4125483 805230.3767 0.064762673 0.036773821 5.60E-08 7.251766438 -0.497800384 KLQAQEIAR ddPTM_HeLa_A486_30min_R1 2 KLQAQEIAR 9 1 A0A0A0MR97;Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 A0A0A0MR97 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 0 0 ; ; 90.906 0.016979 308150000 328660 338560 272260 122679 382780 314940 343110 343500 279620 313970 FALSE FALSE TRUE 305622.6312 311731.2726 377686.3634 285602.9119 334768.1631 276085.9049 257260.249 265292.5486 303857.6867 235349.8684 1.298588494 1.32454407 1.604786805 1.213524842 1.422427662 1.173087144 1.093097059 1.127226246 1.291089257 1 17.84444752 -6.338779603 5.100799681 1.138540085 1.373980784 0.509149032 0.116058966 0.192756482 9.035113227 0.040780021 0.035953135 4.58E-07 6.338779603 0.235440699 KLQDLYMALQAFSFK ddPTM_HeLa_A486_30min_R1 1 KLQDLYMALQAFSFK 15 1 Q7Z478;A0A087WYN9;H0Y8L1 Q7Z478 DHX29 ATP-dependent RNA helicase DHX29 0 0 114.59 0.00017857 4134700 7250.2 7319.9 5936.9 2255.4 7683.2 6573 8668.2 7624.8 6067.1 10444 FALSE FALSE TRUE 6741.99842 6739.844465 8235.826676 5250.685182 6719.501413 5762.090089 6499.324677 5888.799488 6593.001113 7828.754421 0.861184048 0.860908914 1.051997065 0.670692284 0.85831041 0.736016201 0.830186301 0.75220133 0.84215199 1 12.93456707 -5.26217962 24.99951675 0.801891246 0.918317891 0.213596648 0.096593851 93.20163892 3147658.885 0.02501823 0.039753023 5.47E-06 5.26217962 0.116426645 KLQFSLK ddPTM_HeLa_A485_30min_R1 1 KLQFSLK 7 1 P20290;P20290-2 P20290 BTF3 Transcription factor BTF3 0 0 98.392 0.0044795 0 15444 18005 18290 18868 24465 17990 22975 24500 17714 27268 FALSE FALSE TRUE 18879.46452 20110.52813 25056.23211 19898.71106 22029.1787 18931.92858 18066.20356 18491.33659 21269.03732 20470.58943 0.922272638 0.982410799 1.224011267 0.972063415 1.076137977 0.924835538 0.882544375 0.903312367 1.039004636 1 14.32126502 -6.26927323 24.74306123 0.939684214 1.039398543 0.1899458 0.086742517 808.3899635 2553275.151 0.030865355 0.027705252 5.38E-07 6.26927323 0.09971433 KLQLEETMPS(ph)PYGR ddPTM_HeLa_A486_30min_R1 1 KLQLEETMPSPYGR 14 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KLQLEETMPS(1)PYGR 93.869 0.00066391 158210000 257450 278770 214760 86319 286270 245500 291030 274440 200880 266750 TRUE FALSE FALSE 239404.0845 256679.2499 297920.8235 200954.9943 250363.3472 215212.7061 218211.2158 211956.003 218292.4401 199954.0637 1.197295419 1.283691089 1.48994633 1.005005803 1.252104321 1.076310739 1.091306732 1.060023482 1.091712947 1 17.60930908 -5.27476593 24.99937189 1.092047388 1.319648971 0.579504368 0.093917837 556.4986912 1043938.723 0.026209272 0.039119584 5.31E-06 5.27476593 0.227601583 KLQLERPVS(ph)PETQADLQR ddPTM_HeLa_A485_30min_R1 2 KLQLERPVSPETQADLQR 18 2 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 KLQLERPVS(0.987)PET(0.013)QADLQR;KLQLERPVS(1)PETQADLQR ; 238.03 1.35E-45 1935830000 1162080 1941770 1317350 1008300 1746180 1943780 2184390 2763850 1459970 1596970 TRUE FALSE FALSE 1420580.687 2168843.11 1804692.585 1063380.876 1572324.188 2045553.315 1717677.232 2086011.454 1752972.587 1198874.769 1.184928337 1.809065606 1.505322016 0.886982447 1.31149994 1.706227679 1.432741164 1.739974439 1.462181566 1 20.19324954 -6.194729697 24.99990762 1.512258639 1.349709044 0.035841754 0.289598112 587.0664528 220006.3127 0.09718721 0.097187203 6.39E-07 6.194729697 -0.162549595 KLQLERPVS(ph)PETQADLQR ddPTM_HeLa_A486_30min_R1 2 KLQLERPVSPETQADLQR 18 2 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 KLQLERPVS(0.962)PET(0.038)QADLQR;KLQLERPVS(0.965)PET(0.035)QADLQR ; 111.11 7.19E-05 777260000 543182 467704 343732 190250 588380 541901 722981 646906 420556 732062 TRUE FALSE FALSE 505107.7468 430641.4317 476834.2359 442911.6147 514579.894 475046.7643 542083.5069 499619.6257 457010.1327 548748.9103 0.920471526 0.784769543 0.868947941 0.80712983 0.937732876 0.865690583 0.987853455 0.910470374 0.832821941 1 19.06578664 -5.769011825 24.95668525 0.918386111 0.842690998 0.297559182 0.057775669 213.6053244 703982.3744 0.017067376 0.019720371 1.70E-06 5.769011825 -0.075695112 KLRPVS(ph)PEEIRR ddPTM_HeLa_A485_30min_R1 1 KLRPVSPEEIRR 12 3 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4;K7EMJ7 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 KLRPVS(1)PEEIRR 93.909 0.010134 832580000 376830 499280 436180 300040 561740 498510 544570 733080 441140 488210 TRUE FALSE FALSE 460654.5335 557666.4528 597541.133 316430.4255 505811.1932 524611.2128 428218.1708 553290.9806 529672.7516 366508.2318 1.256873635 1.521565969 1.630362107 0.863365125 1.380081399 1.431376344 1.168372586 1.509627704 1.445186508 1 18.48348608 -10.41641418 3.060532578 0.994193999 1.356623099 0.210626684 0.206935513 42423743.14 51272544.05 2146349.894 0.05193926 3.83E-11 10.41641418 0.3624291 KLRPVS(ph)PEEIRR ddPTM_HeLa_A486_30min_R1 1 KLRPVSPEEIRR 12 3 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4;K7EMJ7 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 KLRPVS(1)PEEIRR 83.633 0.023216 609780000 489950 499380 399290 164890 645140 394390 470360 536420 338730 432550 TRUE FALSE FALSE 455607.0351 459807.3101 553905.7814 383872.2531 564220.5255 345734.1717 352670.953 414288.876 368091.3891 324236.6646 1.405168153 1.418122502 1.708337896 1.18392611 1.740150289 1.066301901 1.087696092 1.277736053 1.135255291 1 18.30668771 -6.283083302 24.99672696 1.129149983 1.482083424 0.576202111 0.161603686 612.8268574 707756.0041 0.053996308 0.047660424 5.21E-07 6.283083302 0.352933441 KLS(ph)DASDER ddPTM_HeLa_A486_30min_R1 5 KLSDASDER 9 1 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 0 KLS(0.998)DAS(0.002)DER;KLS(0.617)DAS(0.383)DER;KLS(0.999)DAS(0.001)DER;KLS(1)DASDER;KLS(1)DASDER ;;;; 141.46 7.19E-05 2185150000 7282360 6982010 3506390 2457920 4963110 6980620 7361720 6577030 5641730 10404240 TRUE FALSE FALSE 6771904.17 6428730.1 4864158.112 5722161.976 4340590.465 6119422.078 5519739.792 5079583.845 6130759.699 7798950.584 0.868309665 0.824307069 0.623693927 0.733709223 0.556560837 0.784646859 0.707754169 0.651316326 0.786100596 1 22.89484858 -8.05965826 8.134564129 0.999999114 0.716150289 0.477480773 0.088398503 1.136484306 154.8023625 0.0869777 0.022492287 8.72E-09 8.05965826 -0.283848824 KLS(ph)FLSWGTNK ddPTM_HeLa_A485_30min_R1 1 KLSFLSWGTNK 11 1 Q8IUC4-2;A8MT19;Q8IUC4 Q8IUC4-2 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 0 KLS(0.999)FLS(0.001)WGTNK 97.45 0.0010288 88438000 168260 139550 88795 190700 209830 168780 297010 297370 164090 276520 TRUE FALSE FALSE 205688.8565 155869.1586 121643.9656 201117.4581 188938.5884 177617.0598 233551.3872 224439.5412 197021.3579 207588.653 0.990848264 0.75085587 0.58598562 0.968826837 0.910158555 0.855620272 1.125068176 1.081174419 0.949095025 1 17.66336806 -6.130319151 1.155016009 1.035815045 0.792921593 0.363911853 0.12018071 0.500327982 1.392838222 0.060850578 0.061941346 7.41E-07 6.130319151 -0.242893452 KLS(ph)FLSWGTNK ddPTM_HeLa_A486_30min_R1 2 KLSFLSWGTNK 11 1 Q8IUC4-2;A8MT19;Q8IUC4 Q8IUC4-2 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 0 KLS(0.999)FLS(0.001)WGTNK;KLS(0.636)FLS(0.364)WGTNK ; 138.28 7.63E-06 289420000 544790 511180 267060 246420 464740 566540 718150 806340 384720 624810 TRUE FALSE FALSE 506603.0343 470672.2351 370472.7841 573678.2134 406447.9757 496646.055 538461.2742 622753.9843 418067.8394 468353.5092 1.081668066 1.004950803 0.791011014 1.224882919 0.86782306 1.060408527 1.149689847 1.329666528 0.892633088 1 18.83723835 -6.519764351 21.25132158 1.11826687 0.993004224 0.079047233 0.151267373 38.32757802 261562.6728 0.054762462 0.043503416 3.02E-07 6.519764351 -0.125262647 KLS(ph)FTESLTSGASLLTLNK ddPTM_HeLa_A485_30min_R1 1 KLSFTESLTSGASLLTLNK 19 1 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 KLS(0.454)FT(0.454)ES(0.068)LT(0.011)S(0.014)GASLLTLNK 72.184 0.0029034 112740000 48805 49100 31399 59647 57186 57471 96584 106510 53398 99627 TRUE FALSE FALSE 59661.50387 54841.81789 43014.79672 62905.36458 51492.36105 60480.09269 75948.03938 80388.2555 64114.4888 74791.8224 0.797700898 0.733259548 0.575127004 0.841072761 0.688475817 0.808645795 1.015459136 1.074826805 0.857239291 1 16.19059292 -6.629494141 3.7644602 0.993039071 0.726662546 0.685110209 0.083062446 0.130068537 3.505532895 0.033152262 0.024991646 2.35E-07 6.629494141 -0.266376525 KLS(ph)FTESLTSGASLLTLNK ddPTM_HeLa_A486_30min_R1 1 KLSFTESLTSGASLLTLNK 19 1 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 KLS(0.633)FT(0.136)ES(0.23)LTSGASLLTLNK 252.84 3.90E-58 148680000 305480 263300 142600 167500 246950 297800 355990 336570 226660 387600 TRUE FALSE FALSE 284067.4295 242435.1491 197818.539 389948.465 215975.2283 261060.4638 266917.5367 259940.3583 246307.0713 290542.4371 0.977714073 0.834422508 0.680859364 1.342139444 0.743351747 0.898527824 0.91868692 0.894672602 0.847749037 1 18.14838938 KLS(ph)GDQITLPTTVDYSSVPK ddPTM_HeLa_A485_30min_R1 2 KLSGDQITLPTTVDYSSVPK 20 1 E9PJ38;E9PND3;E9PN10;O00559;O00559-2 E9PJ38 EBAG9 Receptor-binding cancer antigen expressed on SiSo cells 1 0 KLS(0.928)GDQIT(0.072)LPTTVDYSSVPK;KLS(0.945)GDQIT(0.055)LPTTVDYSSVPK ; 122.04 1.54E-06 246560000 143268 130433 97223 179292 156466 166240 235620 217670 118521 286580 TRUE FALSE FALSE 175137.4723 145686.0047 133189.8335 189086.268 140887.6957 174944.0693 185277.8622 164286.0912 142307.0776 215140.8801 0.814059477 0.677165607 0.61908194 0.878895112 0.654862505 0.813160517 0.861193196 0.763620987 0.661459958 1 17.71492216 -6.306451555 24.47645959 0.807694925 0.728185323 0.150125357 0.106381844 790.5969377 429903.4796 0.036667221 0.032337626 4.94E-07 6.306451555 -0.079509602 KLS(ph)GDQITLPTTVDYSSVPK ddPTM_HeLa_A486_30min_R1 4 KLSGDQITLPTTVDYSSVPK 20 1 E9PJ38;E9PND3;E9PN10;O00559;O00559-2 E9PJ38 EBAG9 Receptor-binding cancer antigen expressed on SiSo cells 1 0 KLS(1)GDQITLPTTVDYSSVPK;KLS(0.88)GDQIT(0.12)LPTTVDYSSVPK;KLS(0.999)GDQIT(0.001)LPTTVDYSSVPK;KLS(1)GDQITLPTTVDYSSVPK ;;; 201.17 1.70E-26 8029140000 1445830 1236260 757804 580870 1285810 1493050 1836710 1592780 1317340 2103940 TRUE FALSE FALSE 1344484.783 1138294.255 1051246.003 1352294.716 1124531.72 1308852.671 1377145.731 1230138.764 1431528.092 1577099.73 0.852504606 0.721764283 0.666569136 0.857456691 0.713037799 0.829911163 0.873214106 0.780000618 0.907696619 1 20.58884246 -8.056850874 0.424117269 1.013162019 0.750316577 0.545077965 0.064592389 1.02028816 0.466694187 0.094523562 0.047104888 8.77E-09 8.056850874 -0.262845442 KLS(ph)GDQPAAR ddPTM_HeLa_A485_30min_R1 9 KLSGDQPAAR 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR ;;;;;;;; 167.03 2.26E-07 62834000000 25687050 26071640 23019630 32069510 35128060 27698390 39927860 38858210 26671570 44483550 TRUE FALSE FALSE 31401045.65 29120491.5 31535549.06 33821386.13 31630587 29148634.87 31396946.53 29328173.07 32024309.45 33394619.64 0.940302539 0.872011474 0.944330236 1.012779498 0.947176142 0.872854226 0.940179791 0.878230487 0.958966139 1 24.99311235 -8.004124924 24.87096791 1.000000007 0.926566284 0.244492001 0.040920187 191.5257468 1154801.709 0.041486627 0.010711801 9.91E-09 8.004124924 -0.073433722 KLS(ph)GDQPAAR ddPTM_HeLa_A486_30min_R1 7 KLSGDQPAAR 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR ;;;;;; 181.77 8.61E-10 1.32E+11 38516100 40205400 24953580 16840560 39153800 39836600 49456900 48903100 31481400 47915400 TRUE FALSE FALSE 35816320.29 37019377.68 34616274.46 39205674.75 34242765.31 34921965.32 37082260.52 37768931.68 34210233.1 35917071.96 0.997194881 1.0306903 0.963783309 1.091560993 0.953384099 0.972294327 1.032441079 1.051559317 0.952478341 1 25.09816641 -7.780221993 24.99933629 0.976239203 1.010762645 0.103178404 0.041655995 672.9556205 895667.6496 0.038766446 0.010083 1.66E-08 7.780221993 0.034523442 KLS(ph)GDQPAART(ph)PR ddPTM_HeLa_A485_30min_R1 1 KLSGDQPAARTPR 13 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 2 0 KLS(1)GDQPAART(1)PR 65.022 0.0032084 0 296140 465500 347470 335010 909780 704030 992700 1488800 462790 609830 TRUE FALSE FALSE 362015.3213 519936.1757 476013.6124 353310.748 819199.1088 740891.9222 780601.5354 1123669.466 555667.708 457810.6041 0.790753465 1.135701469 1.039761002 0.771739983 1.789384303 1.61833718 1.705075261 2.454441762 1.213750191 1 18.80439135 -5.766163007 24.99986915 1.7060411 0.956380692 0.442712766 0.376327001 99.56486362 526948.1182 0.111106566 0.130094105 1.71E-06 5.766163007 -0.749660408 KLS(ph)LGQYDNDAGGQLPFSK ddPTM_HeLa_A485_30min_R1 2 KLSLGQYDNDAGGQLPFSK 19 1 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 KLS(1)LGQYDNDAGGQLPFSK;KLS(1)LGQYDNDAGGQLPFSK ; 204.61 7.25E-26 10337000000 1881130 1654550 1097820 2031200 2218700 1878860 2866600 2897600 1686730 2874300 TRUE FALSE FALSE 2299580.879 1848035.23 1503949.302 2142159.313 1997798.438 1977234.204 2254127.492 2186959.057 2025241.239 2157789.908 1.065711203 0.856448176 0.696985975 0.992756202 0.92585401 0.91632378 1.044646415 1.013518067 0.938572023 1 21.04112297 -6.192767023 1.320522987 0.996157306 0.884339344 0.158724962 0.094023474 0.755946334 2.683301215 0.045287567 0.043300172 6.42E-07 6.192767023 -0.111817962 KLS(ph)LGQYDNDAGGQLPFSK ddPTM_HeLa_A486_30min_R1 2 KLSLGQYDNDAGGQLPFSK 19 1 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 KLS(1)LGQYDNDAGGQLPFSK;KLS(1)LGQYDNDAGGQLPFSK ; 209.68 3.86E-26 8933100000 5344100 5353900 2746000 2210100 4932300 5743700 7663700 6989100 3882600 5869900 TRUE FALSE FALSE 4969506.187 4929637.465 3809324.74 5145224.492 4313644.942 5035100.692 5746161.202 5397834.501 4219146.894 4400038.833 1.129423256 1.120362263 0.865747982 1.169358882 0.980365198 1.144330967 1.305934202 1.226769741 0.958888558 1 22.06908483 -6.389826245 8.454628204 1.153438038 1.053010799 0.062942879 0.12421516 0.657787513 42.01225878 0.043734213 0.038516893 4.08E-07 6.389826245 -0.10042724 KLS(ph)LPTDLKPDLDVK ddPTM_HeLa_A485_30min_R1 1 KLSLPTDLKPDLDVK 15 2 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 KLS(0.997)LPT(0.003)DLKPDLDVK 166.25 2.26E-12 803080000 910160 460750 314570 2217200 760940 931510 1811500 1385700 754630 3499400 TRUE FALSE FALSE 1112621.952 514630.7045 430942.5333 2338320.022 685178.1418 980282.4232 1424458.226 1045854.902 906077.3191 2627063.982 0.423522975 0.195895764 0.164039603 0.890088722 0.260815171 0.373147525 0.542224413 0.398107891 0.344901124 1 21.32501991 -14 0.362732508 8.509517323 0.383765776 0.45731136 0.195781075 465.3771796 3.688627282 2731.39209 0.14461984 1.00E-14 14 -8.125751547 KLS(ph)LPTDLKPDLDVK ddPTM_HeLa_A486_30min_R1 2 KLSLPTDLKPDLDVK 15 2 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 KLS(0.752)LPT(0.248)DLKPDLDVK;KLS(0.707)LPT(0.293)DLKPDLDVK ; 168.99 1.75E-12 2405100000 1560500 1242990 379170 896420 866770 1876320 2551160 2352740 1076230 3603300 TRUE FALSE FALSE 1451117.008 1144490.946 525994.7785 2086911.063 758051.6243 1644838.715 1912832.785 1817072.462 1169518.483 2701010.226 0.537249728 0.423726995 0.194740017 0.772640933 0.280654852 0.608971673 0.708191611 0.67273809 0.432992986 1 21.36506767 -14 0.130432605 2.640306209 0.313594796 0.439626958 0.171104401 131.9005956 1.082493468 56.34491696 1.268438969 1.00E-14 14 -2.326711412 KLS(ph)LQER ddPTM_HeLa_A485_30min_R1 1 KLSLQER 7 1 J3KPJ3;Q8N5S9;Q8N5S9-2;F5H4I7;Q96RR4-6;Q96RR4-5;Q96RR4-2;Q96RR4-3;Q96RR4-4;Q96RR4-7;Q96RR4 J3KPJ3 CAMKK1;CAMKK2 Calcium/calmodulin-dependent protein kinase kinase 1;Calcium/calmodulin-dependent protein kinase kinase 2 1 0 KLS(1)LQER 67.704 0.013543 113310000 149880 142750 146500 213710 223850 189390 273610 291470 190210 323320 TRUE FALSE FALSE 183220.2889 159443.3707 200696.4464 225384.4362 201562.708 199306.1675 215150.9883 219986.5255 228383.4023 242722.2743 0.754855686 0.656896328 0.82685632 0.928569233 0.830425261 0.821128461 0.886408093 0.906330192 0.940924779 1 17.88894698 -1.656888768 0.162366803 1.015844815 4.39E-15 0.68970444 0.052627449 31.28696649 0.395227701 0.170082148 7.323962105 0.022034908 1.656888768 -1.015844815 KLS(ph)LQER ddPTM_HeLa_A486_30min_R1 1 KLSLQER 7 1 J3KPJ3;Q8N5S9;Q8N5S9-2;F5H4I7;Q96RR4-6;Q96RR4-5;Q96RR4-2;Q96RR4-3;Q96RR4-4;Q96RR4-7;Q96RR4 J3KPJ3 CAMKK1;CAMKK2 Calcium/calmodulin-dependent protein kinase kinase 1;Calcium/calmodulin-dependent protein kinase kinase 2 1 0 KLS(1)LQER 87.568 0.0055111 0 214980 196170 124970 81320 195560 297280 335120 372190 185930 348700 TRUE FALSE FALSE 199911.0122 180624.7748 173361.7308 189317.0697 171031.0413 260604.6161 251269.4315 287450.4619 202046.5621 261383.2503 0.76481952 0.691034236 0.663247284 0.724289217 0.654330532 0.997021101 0.961306553 1.099727934 0.772989707 1 17.99580717 -6.263883005 24.99282521 0.972135658 0.698429612 0.72975959 0.081095895 107.5517006 1100008.843 0.026461479 0.024436882 5.45E-07 6.263883005 -0.273706046 KLS(ph)LRPTVAELQAR ddPTM_HeLa_A485_30min_R1 1 KLSLRPTVAELQAR 14 2 J3KP75;O75167-5;O75167-2;O75167;O75167-4 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 KLS(1)LRPTVAELQAR 67.995 0.0082083 433400000 197490 214540 173650 197080 253670 226230 306680 336470 196750 310410 TRUE FALSE FALSE 241420.9692 239628.5868 237890.3612 207845.9814 228413.7241 238075.053 241155.3127 253950.2049 236235.9203 233030.4997 1.036005886 1.028314264 1.020855045 0.891926085 0.980188106 1.02164761 1.034865878 1.089772392 1.01375537 1 17.83015927 -6.493751942 3.412947498 1.04143735 0.989940546 0.173608281 0.043749758 0.407728805 9.833441264 0.018358069 0.014985259 3.21E-07 6.493751942 -0.051496804 KLS(ph)LRPTVAELQAR ddPTM_HeLa_A486_30min_R1 1 KLSLRPTVAELQAR 14 2 J3KP75;O75167-5;O75167-2;O75167;O75167-4 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 KLS(0.987)LRPT(0.013)VAELQAR 79.676 0.0036372 482730000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 KLS(ph)LSEGK ddPTM_HeLa_A485_30min_R1 1 KLSLSEGK 8 1 K7EPU6;K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26 K7EPU6 GLYR1 Putative oxidoreductase GLYR1 1 0 KLS(1)LSEGK 121.68 0.0004102 307820000 506590 382670 249430 683170 507450 436690 675270 663370 368860 839730 TRUE FALSE FALSE 619279.1978 427419.9277 341704.5366 720489.8472 456926.4962 459554.4131 530993.0481 500677.4674 442886.8186 630400.7651 0.982357941 0.678013022 0.542043341 1.142907635 0.72481907 0.728987715 0.842310285 0.794220907 0.702548035 1 19.26590976 -10.08852588 4.31558087 1.000023476 0.790233112 0.131472642 0.159351618 105294153.4 27283.41131 25575.82464 0.037673829 8.16E-11 10.08852588 -0.209790363 KLS(ph)LSEGK ddPTM_HeLa_A486_30min_R1 2 KLSLSEGK 8 1 K7EPU6;K7EMM8;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26 K7EPU6 GLYR1 Putative oxidoreductase GLYR1 1 0 KLS(0.679)LS(0.321)EGK;KLS(0.5)LS(0.5)EGK ; 144.1 0.00020936 1169150000 1684140 1801560 903880 1016400 1706860 2409430 2783800 2643700 1714970 3575100 TRUE FALSE FALSE 1566090.483 1658797.824 1253886.543 2366230.566 1492769.703 2112179.024 2087263.796 2041787.222 1863624.98 2679871.69 0.584390099 0.618984047 0.467890514 0.882964127 0.557030289 0.788164236 0.778867064 0.761897381 0.69541575 1 21.3537325 -13.99999962 0.048409279 2.348856148 2.50E-10 0.523901834 0.105487838 458.0139357 1.63885874 80.66343697 18.86848158 1.00E-14 13.99999962 -2.348856148 KLS(ph)NPDIFSSTGK ddPTM_HeLa_A486_30min_R1 1 KLSNPDIFSSTGK 13 1 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 KLS(0.999)NPDIFS(0.001)STGK 193.77 1.40E-15 0 151490 131130 63954 53280 114840 157470 182020 187990 108730 201770 TRUE FALSE FALSE 140871.3333 120738.7812 88718.70155 124038.5326 100435.6964 138042.9524 136476.6708 145188.7808 118154.8039 151245.4787 0.931408559 0.798296797 0.586587462 0.820113987 0.664057512 0.912707961 0.90235207 0.959954519 0.781212139 1 17.20653249 -6.285033741 24.02945373 0.908186701 0.755910625 0.360436652 0.100554528 552.3083828 562490.7519 0.03525707 0.031115341 5.19E-07 6.285033741 -0.152276076 KLS(ph)PIIEDSR ddPTM_HeLa_A485_30min_R1 6 KLSPIIEDSR 10 1 O60566-3;O60566 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 KLS(0.997)PIIEDS(0.003)R;KLS(0.985)PIIEDS(0.015)R;KLS(1)PIIEDSR;KLS(1)PIIEDSR;KLS(1)PIIEDSR;KLS(1)PIIEDSR ;;;;; 119.54 0.00017117 9627970000 7829850 8115170 6484060 9243400 10218810 8781890 11676550 12243010 7504780 12747200 TRUE FALSE FALSE 9571573.12 9064168.539 8882783.618 9748343.536 9201389.396 9241696.181 9181759.704 9240392.601 9010920.508 9569557.635 1.000210614 0.947187831 0.928233463 1.018682776 0.961527141 0.965739121 0.959475877 0.9656029 0.941623516 1 23.19002081 -4.241980683 23.58391793 0.964483724 1.000210686 0.145816515 0.025241653 4069.148099 4931639.535 0.006153353 0.210056871 5.73E-05 4.241980683 0.035726962 KLS(ph)PIIEDSR ddPTM_HeLa_A486_30min_R1 6 KLSPIIEDSR 10 1 O60566-3;O60566 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 KLS(0.992)PIIEDS(0.008)R;KLS(1)PIIEDSR;KLS(1)PIIEDSR;KLS(1)PIIEDSR;KLS(1)PIIEDSR;KLS(1)PIIEDSR ;;;;; 148.7 2.50E-06 9052600000 10241640 10197420 6585750 4309880 10625390 10545460 12779900 12703200 7942190 12941900 TRUE FALSE FALSE 9523753.924 9389339.301 9135928.773 10033618.45 9292654.508 9244468.364 9582233.848 9810958.669 8630625.424 9701164.002 0.981712496 0.967856981 0.941735319 1.034269542 0.957890672 0.952923625 0.98774063 1.01131768 0.88964844 1 23.20972643 KLS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 KLSPLR 6 1 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-6;Q8IZD2-8;Q8IZD2-3;Q8IZD2-4 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 KLS(1)PLR 76.221 0.014203 828660000 966620 979230 649470 408550 992690 988680 1133700 1134600 833940 1229400 TRUE FALSE FALSE 898864.9296 901632.2485 900962.1774 951125.047 868177.5637 866706.7138 850036.2689 876276.3481 906226.5907 921550.2379 0.975383536 0.978386431 0.977659318 1.032092454 0.942083815 0.940487754 0.922398187 0.950872033 0.983371881 1 19.81370329 -5.81176802 24.99999749 0.951569914 0.989044117 0.284789883 0.025892277 126.7202373 62945.52938 0.008067091 0.009147235 1.54E-06 5.81176802 0.037474203 KLS(ph)PPPLPPR ddPTM_HeLa_A485_30min_R1 2 KLSPPPLPPR 10 1 O00750;F5GWN5 O00750 PIK3C2B Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta 1 0 KLS(1)PPPLPPR;KLS(1)PPPLPPR ; 78.486 0.0050531 556140000 209553 241438 178210 276870 300970 244241 294200 381580 222052 344970 TRUE FALSE FALSE 256167.3419 269672.0739 244137.2949 291994.707 271004.37 257029.0811 231341.7666 287996.9067 266615.7996 258975.3277 0.989157323 1.041304113 0.94270484 1.127500097 1.046448604 0.992484818 0.893296549 1.112063104 1.029502702 1 17.98245513 -6.265352769 24.29680913 1.005462575 1.030714109 0.031448522 0.066272866 1067.746425 6629217.464 0.023692631 0.021649302 5.43E-07 6.265352769 0.025251534 KLS(ph)PPPLPPR ddPTM_HeLa_A486_30min_R1 2 KLSPPPLPPR 10 1 O00750;F5GWN5 O00750 PIK3C2B Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta 1 0 KLS(1)PPPLPPR;KLS(1)PPPLPPR ; 96.734 0.0012965 550180000 528050 535120 343800 251732 539020 598960 624090 686610 441030 717990 TRUE FALSE FALSE 491036.4219 492715.1423 476928.5673 586044.8178 471411.0854 525066.405 467936.081 530283.8916 479258.8355 538200.6307 0.912366864 0.915486 0.886153862 1.088896565 0.875902142 0.975596042 0.869445434 0.985290357 0.890483601 1 19.03778456 KLS(ph)PTEPK ddPTM_HeLa_A485_30min_R1 4 KLSPTEPK 8 1 O14828-2;O14828 O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 1 0 KLS(0.843)PT(0.157)EPK;KLS(0.857)PT(0.143)EPK;KLS(0.824)PT(0.176)EPK;KLS(0.743)PT(0.257)EPK ;;; 113.22 0.00063476 6446700000 7941970 5411820 3154990 11996700 6682920 7065560 11951700 11207500 5140480 17238200 TRUE FALSE FALSE 9708633.827 6044685.272 4322152.091 12652049.34 6017545.02 7435501.796 9398121.659 8458843.052 6172127.185 12941033.99 0.750220874 0.467094459 0.333988157 0.977669123 0.464997235 0.574567829 0.726226488 0.653645069 0.476942352 1 23.62544956 -11.11280867 2.475589912 1.756944266 0.602183622 0.316654409 0.175038657 23901537.51 5935615.015 101972465.6 0.045214027 7.71E-12 11.11280867 -1.154760643 KLS(ph)PTEPK ddPTM_HeLa_A486_30min_R1 6 KLSPTEPK 8 1 O14828-2;O14828 O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 1 0 KLS(0.792)PT(0.208)EPK;KLS(0.695)PT(0.305)EPK;KLS(0.883)PT(0.117)EPK;KLS(0.699)PT(0.301)EPK;KLS(0.905)PT(0.095)EPK;KLS(0.95)PT(0.05)EPK ;;;;; 118.77 0.00048757 6762460000 7485990 6449960 3150010 4054860 6084490 8565050 11235280 9571080 5745050 13729900 TRUE FALSE FALSE 6961260.759 5938841.679 4369778.232 9439919.001 5321316.529 7508381.214 8424094.109 7391954.019 6243035.56 10291843.67 0.676386173 0.577043518 0.424586534 0.917223318 0.517042106 0.729546761 0.818521382 0.718234191 0.60660031 1 23.29499811 -14 0.137215434 2.116270497 0.543852506 0.36789771 0.134488392 151.5473749 1.283039229 46.49591441 0.868079386 1.00E-14 14 -1.572417991 KLS(ph)PTKEAFGEQPLQLTTKPDLLAWDPAR ddPTM_HeLa_A485_30min_R1 2 KLSPTKEAFGEQPLQLTTKPDLLAWDPAR 29 3 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 KLS(0.991)PT(0.009)KEAFGEQPLQLTTKPDLLAWDPAR;KLS(0.969)PT(0.031)KEAFGEQPLQLTTKPDLLAWDPAR ; 241.46 4.47E-50 1349460000 517190 405460 246670 682830 607360 682340 1044840 1169310 438860 1089530 TRUE FALSE FALSE 632237.1312 452875.02 337923.4978 720131.2739 546889.1058 718066.2673 821601.3984 882534.8891 526935.1765 817930.2223 0.772971965 0.553684175 0.413144653 0.880431184 0.668625625 0.87790651 1.004488373 1.078985548 0.644229987 1 19.64161825 -5.949615782 1.256729405 0.937028679 0.599490362 0.4175773 0.157081769 0.420672937 1.391158633 0.06775713 0.080891366 1.12E-06 5.949615782 -0.337538318 KLS(ph)PTKEAFGEQPLQLTTKPDLLAWDPAR ddPTM_HeLa_A486_30min_R1 1 KLSPTKEAFGEQPLQLTTKPDLLAWDPAR 29 3 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 KLS(0.99)PT(0.01)KEAFGEQPLQLTTKPDLLAWDPAR 240.83 4.73E-50 698020000 722540 542500 233710 421960 606050 697010 999440 972320 464230 1157200 TRUE FALSE FALSE 671893.6772 499510.3242 324208.771 982344.2047 530033.5578 611019.9929 749369.541 750943.9616 504469.8302 867429.5879 0.774580077 0.575851148 0.373758027 1.13247717 0.611039288 0.704402987 0.86389668 0.865711721 0.581568622 1 19.72638713 -13.99999996 0.068983203 1.890499594 0.393631501 0.152641775 0.196864657 600.4779424 2.980860177 86.96252012 11.13572062 1.00E-14 13.99999996 -1.496868093 KLS(ph)QRPTVAELLAR ddPTM_HeLa_A485_30min_R1 2 KLSQRPTVAELLAR 14 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 KLS(1)QRPTVAELLAR;KLS(1)QRPTVAELLAR ; 157.42 1.05E-08 3795500000 1258250 1204920 989370 1292570 1547170 1547790 1954890 2055890 1275350 1922890 TRUE FALSE FALSE 1538143.372 1345824.913 1355379.134 1363179.826 1393128.322 1628829.891 1537211.782 1551679.754 1531301.047 1443548.911 1.0655291 0.932302953 0.938921517 0.944325347 0.965071784 1.128351023 1.064883753 1.074906255 1.060789167 1 20.46118856 -6.23864089 23.78369735 1.070411282 0.964111192 0.526079017 0.045587702 311.6921264 325161.3229 0.014673827 0.014661857 5.77E-07 6.23864089 -0.10630009 KLS(ph)QRPTVAELLAR ddPTM_HeLa_A486_30min_R1 2 KLSQRPTVAELLAR 14 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 KLS(1)QRPTVAELLAR;KLS(1)QRPTVAELLAR ; 176.69 3.67E-13 3376500000 1245734 1250213 755023 510157 1244172 1298845 1657279 1550861 901610 1396945 TRUE FALSE FALSE 1158414.48 1151141.569 1047388.126 1187671.278 1088116.346 1138606.71 1242610.265 1197763.805 979762.2807 1047140.879 1.106264212 1.099318718 1.000236116 1.134203908 1.039130806 1.087348161 1.186669616 1.143842084 0.935654696 1 19.99802412 -10.52667943 3.828244528 0.99869008 1.084963363 0.107699655 0.069622837 0.000780275 9.65E-05 0.067575148 0.01614261 2.97E-11 10.52667943 0.086273284 KLS(ph)SERPSSDGEGVVENGITTCNGK ddPTM_HeLa_A485_30min_R1 1 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KLS(0.273)S(0.273)ERPS(0.227)S(0.227)DGEGVVENGITTCNGK 69.548 0.0046837 221750000 105170 95477 75493 125290 137090 139210 137040 187660 111650 168840 TRUE FALSE FALSE 128564.7037 106642.2046 103421.0022 132134.2754 123440.8382 146498.8203 107760.2845 141636.0908 134057.1309 126751.2953 1.014306823 0.841350018 0.815936453 1.042468838 0.973882263 1.155797422 0.850171071 1.117433084 1.05763914 1 16.95164096 -5.275897011 24.7998879 1.028727478 0.88561299 0.320735761 0.091723475 769.1110931 1319292.401 0.025067493 0.037376702 5.30E-06 5.275897011 -0.143114488 KLS(ph)SGDLR ddPTM_HeLa_A486_30min_R1 2 KLSSGDLR 8 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KLS(0.968)S(0.032)GDLR;KLS(0.983)S(0.017)GDLR ; 106.29 0.00081891 590610000 2049620 2000320 1185630 802120 1965470 2420720 2581270 2671900 1888480 2681250 TRUE FALSE FALSE 1905952.222 1841807.358 1644737.688 1867375.897 1718942.425 2122076.178 1935408.944 2063566.697 2052174.967 2009847.548 0.948306862 0.916391574 0.818339525 0.929113205 0.855260105 1.055839375 0.96296306 1.026727972 1.021060015 1 20.93865464 -6.259486255 24.99921696 1.011841394 0.892559894 0.682641776 0.040845424 103.5214116 1325036.031 0.013627018 0.012969604 5.50E-07 6.259486255 -0.1192815 KLS(ph)SGDLRVPVTR ddPTM_HeLa_A485_30min_R1 1 KLSSGDLRVPVTR 13 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KLS(0.895)S(0.105)GDLRVPVTR 75.998 0.0053809 719570000 191020 299870 240430 116550 389500 322770 480480 684700 202810 194010 TRUE FALSE FALSE 233511.74 334937.188 329375.0621 122916.8314 350720.0124 339669.7381 377821.5228 516776.2514 243512.1067 145646.8775 1.603273232 2.299652377 2.261463258 0.843937292 2.408016007 2.332145693 2.594092845 3.548145078 1.671934963 1 17.15211525 -5.912482661 22.66331494 2.407478082 1.802366501 0.082460793 0.726634221 21.7987334 5636.805546 0.220215352 0.249700911 1.22E-06 5.912482661 -0.605111581 KLS(ph)SSDAPAQDTGSSAAAVETDASR ddPTM_HeLa_A485_30min_R1 3 KLSSSDAPAQDTGSSAAAVETDASR 25 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 KLS(0.719)S(0.213)S(0.068)DAPAQDTGSSAAAVETDASR;KLS(0.538)S(0.157)S(0.305)DAPAQDTGSSAAAVETDASR;KLS(0.572)S(0.154)S(0.274)DAPAQDTGSSAAAVETDASR ;; 264.1 5.13E-62 3508930000 1124410 1246130 1064020 1488900 1511200 1462680 1807370 1768220 1105740 1956790 TRUE FALSE FALSE 1374531.125 1391854.064 1457645.276 1570234.837 1360739.622 1539263.663 1421210.635 1334561.273 1327651.876 1468998.265 0.935692817 0.947485165 0.992271611 1.068915379 0.926304444 1.047832186 0.96746924 0.9084839 0.903780424 1 20.48640126 -9.751842449 5.170447445 1.000000011 0.96921963 0.032536789 0.052974428 6.87E-09 1.70E-09 0.053553214 0.012988558 1.77E-10 9.751842449 -0.030780381 KLS(ph)SSDAPAQDTGSSAAAVETDASR ddPTM_HeLa_A486_30min_R1 2 KLSSSDAPAQDTGSSAAAVETDASR 25 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;Q7Z4S6-3;H0YHT2;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 0 KLS(0.718)S(0.141)S(0.141)DAPAQDTGSSAAAVETDASR;KLS(0.745)S(0.194)S(0.061)DAPAQDTGSSAAAVETDASR ; 270.23 5.42E-63 3001400000 1411110 1186960 740230 556690 1259830 1282960 1616790 1542750 1091040 1944620 TRUE FALSE FALSE 1312198.476 1092900.967 1026866.88 1296002.454 1101810.374 1124681.439 1212252.041 1191499.503 1185612.226 1457674.495 0.900199929 0.749756527 0.704455545 0.889089065 0.755868596 0.771558701 0.831634254 0.81739751 0.813358696 1 20.47523716 -9.601949012 0.528118532 1.037643513 0.793313283 0.509573024 0.057928642 9.114519265 2.020181665 0.66943747 0.026466826 2.50E-10 9.601949012 -0.24433023 KLS(ph)SSS(ph)EPYEEDEFNDDQSIKK ddPTM_HeLa_A485_30min_R1 1 KLSSSSEPYEEDEFNDDQSIKK 22 2 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 KLS(0.976)S(0.024)S(0.024)S(0.976)EPYEEDEFNDDQSIKK 130.71 1.13E-06 265200000 123200 64988 63355 233730 121830 118760 227590 205480 88814 331170 TRUE FALSE FALSE 150605.415 72587.78128 86792.65092 246498.0781 109700.1774 124978.09 178963.5373 155085.7078 106638.1551 248615.4137 0.60577666 0.291968145 0.349104062 0.99148349 0.441244474 0.502696466 0.719840876 0.623797638 0.428928173 1 17.92355622 -14 0.224198289 3.274997725 0.500298467 0.320907675 0.193224111 195.7186852 1.959805941 202.0704468 0.364426318 1.00E-14 14 -2.774699258 KLS(ph)SSS(ph)EPYEEDEFNDDQSIKK ddPTM_HeLa_A486_30min_R1 2 KLSSSSEPYEEDEFNDDQSIKK 22 2 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 KLS(0.893)S(0.137)S(0.394)S(0.576)EPYEEDEFNDDQSIKK;KLS(0.983)S(0.018)S(0.024)S(0.976)EPYEEDEFNDDQSIKK ; 249.47 1.66E-47 1434220000 1027440 885890 273770 788430 663330 1323340 1855370 1581670 700650 2212600 TRUE FALSE FALSE 955421.7617 815688.85 379781.0758 1835504.885 580128.9661 1160079.766 1391136.802 1221558.269 761382.9061 1658550.558 0.576058268 0.491808251 0.228983719 1.106692151 0.349780694 0.699453966 0.838766593 0.736521574 0.459065238 1 20.66149156 -14 0.060006092 2.299500387 0.056585472 0.20348928 0.237966252 651.2641252 2.848567981 126.7841329 21.08827888 1.00E-14 14 -2.242914915 KLSAS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KLSASSPR 8 1 A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;J3QKD2;Q15326-4;Q15326-5;Q15326-2;Q15326-6;Q15326-3;Q15326 A0A0A0MRY2 ZMYND11 Zinc finger MYND domain-containing protein 11 1 0 KLS(0.088)AS(0.456)S(0.456)PR 46.462 0.037006 154070000 346320 484700 365010 351990 529440 531040 589570 746260 458070 592530 TRUE FALSE FALSE 423357.6892 541381.4487 500042.3883 371218.3224 476727.0946 558844.4333 463603.5532 563238.5649 550000.4473 444823.1757 0.951743777 1.217071138 1.124137445 0.834530085 1.071722699 1.2563294 1.042219872 1.266207778 1.236447374 1 18.76287243 -6.019534182 24.44985398 1.168894077 1.039369317 0.192686863 0.124358684 983.598029 1231114.861 0.04117097 0.041790393 9.56E-07 6.019534182 -0.12952476 KLSAS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 KLSASSPR 8 1 A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;J3QKD2;Q15326-4;Q15326-5;Q15326-2;Q15326-6;Q15326-3;Q15326 A0A0A0MRY2 ZMYND11 Zinc finger MYND domain-containing protein 11 1 0 KLS(0.092)AS(0.454)S(0.454)PR 53.751 0.027736 115990000 441420 444480 361630 154670 474640 476700 500010 469510 466550 534290 TRUE FALSE FALSE 410478.7375 409257.786 501662.8208 360079.5766 415106.2254 417889.6007 374902.2094 362612.8223 506990.9296 400500.3064 1.024914915 1.02186635 1.252590355 0.89907441 1.036469183 1.043418929 0.936084701 0.905399613 1.265893987 1 18.61144382 -5.28648153 24.99361913 1.007516471 1.091998224 0.106805455 0.114647818 1753.324427 1749923.113 0.031697925 0.047041196 5.17E-06 5.28648153 0.084481754 KLSASS(ph)PR ddPTM_HeLa_A485_30min_R1 2 KLSASSPR 8 1 A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;J3QKD2;Q15326-4;Q15326-5;Q15326-2;Q15326-6;Q15326-3;Q15326 A0A0A0MRY2 ZMYND11 Zinc finger MYND domain-containing protein 11 1 0 KLS(0.019)AS(0.125)S(0.857)PR;KLS(0.005)AS(0.387)S(0.608)PR ; 70.977 0.0083628 262640000 1135900 1463690 1118000 1107210 1648820 1610410 1773700 2201870 1377120 1730230 TRUE FALSE FALSE 1388577.036 1634855.813 1531594.724 1167694.079 1484657.691 1694728.577 1394734.505 1661857.93 1653495.352 1298915.504 1.069027995 1.25863138 1.179133454 0.898976166 1.142997899 1.304725806 1.073768464 1.279419582 1.272981459 1 20.30887615 -6.007436018 24.98147081 1.199644322 1.106065386 0.090120147 0.123028522 817.5812052 2746691.382 0.039206478 0.042714001 9.83E-07 6.007436018 -0.093578936 KLSASS(ph)PR ddPTM_HeLa_A486_30min_R1 2 KLSASSPR 8 1 A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;J3QKD2;Q15326-4;Q15326-5;Q15326-2;Q15326-6;Q15326-3;Q15326 A0A0A0MRY2 ZMYND11 Zinc finger MYND domain-containing protein 11 1 0 KLS(0.011)AS(0.076)S(0.912)PR;KLS(0.009)AS(0.089)S(0.901)PR ; 77.379 0.0065575 732790000 1760100 1740490 1475410 585240 1801270 1720370 1930070 1826370 1680690 2055760 TRUE FALSE FALSE 1636726.079 1602567.234 2046728.265 1362468.296 1575337.92 1508128.241 1447146.072 1410545.42 1826373.562 1540984.315 1.062130265 1.039963365 1.328195391 0.884154552 1.022293287 0.978678515 0.939104998 0.915353522 1.18519932 1 20.55542075 -5.287640812 24.99999445 0.984574296 1.133083148 0.308809855 0.105196658 894.3419257 853330.735 0.028995129 0.043022863 5.16E-06 5.287640812 0.148508852 KLSDAS(ph)DER ddPTM_HeLa_A485_30min_R1 1 KLSDASDER 9 1 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 0 KLS(0.317)DAS(0.683)DER 83.226 0.016169 332850000 415430 382340 262580 483750 323020 370940 453640 408190 301610 579390 TRUE FALSE FALSE 507840.9703 427051.3371 359719.2689 510176.0376 290858.9946 390361.8448 356716.1081 308080.7625 362140.3605 434958.7359 1.167561261 0.981820347 0.827019299 1.172929741 0.6687048 0.897468685 0.820114826 0.708298827 0.832585555 1 18.73051901 -1.000000267 0.483899648 0.822756302 10.43339648 0.3267776 0.134495836 109.8066689 1.221101973 0.074379573 1063.517056 0.099999938 1.000000267 9.610640181 KLSFT(ph)ESLTSGASLLTLNK ddPTM_HeLa_A486_30min_R1 1 KLSFTESLTSGASLLTLNK 19 1 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 KLS(0.254)FT(0.46)ES(0.285)LT(0.001)SGASLLTLNK 220.52 9.54E-35 126830000 233880 225480 112580 118210 215750 245210 300270 291190 198600 314560 TRUE FALSE FALSE 217486.2198 207612.1436 156173.991 275198.854 188688.6232 214958.4833 225139.2701 224892.3936 215814.8079 235792.1286 0.922364207 0.880488017 0.662337594 1.167124856 0.800232919 0.911644017 0.954820975 0.953773966 0.91527571 1 17.84715603 -6.402914361 0.215030041 1.011168434 0.820352387 0.081235318 0.118219191 11.64493144 1.409737877 0.33404903 0.721583408 3.95E-07 6.402914361 -0.190816048 KLSFTES(ph)LTSGASLLTLNK ddPTM_HeLa_A485_30min_R1 1 KLSFTESLTSGASLLTLNK 19 1 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 KLS(0.166)FT(0.299)ES(0.534)LTSGASLLTLNK 247.92 2.91E-46 187070000 186120 167460 122110 228620 222570 220410 366260 385530 224140 403970 TRUE FALSE FALSE 227521.7519 187042.9903 167283.5704 241108.9317 200410.1493 231950.3268 288005.5589 290978.163 269122.8421 303267.7135 0.750234007 0.616758666 0.551603626 0.7950366 0.660835758 0.764836863 0.949674318 0.959476232 0.887410133 1 18.21023239 -6.619505213 2.727493016 0.948939972 0.671713744 0.783829564 0.067927093 0.127578275 1.922335015 0.029687435 0.021965939 2.40E-07 6.619505213 -0.277226228 KLSGDQPAAR ddPTM_HeLa_A485_30min_R1 2 KLSGDQPAAR 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 0 ; ; 136.96 4.08E-05 0 208952 256940 238917 235130 343890 245680 348690 364700 263460 343440 FALSE FALSE TRUE 255432.6515 286986.8979 327302.3405 247974.5565 309651.1041 258543.4249 274189.533 275256.7532 316334.0054 257826.7285 0.990714396 1.11309987 1.26946629 0.961787623 1.201004666 1.00277976 1.063464345 1.067603637 1.226924792 1 17.97604231 -5.288418956 24.99410077 1.079397813 1.123294302 0.046914563 0.100994818 2843.256639 2634012.029 0.027815557 0.04126893 5.15E-06 5.288418956 0.043896489 KLSGDQPAAR ddPTM_HeLa_A486_30min_R1 2 KLSGDQPAAR 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 0 ; ; 114.86 0.001252 540280000 252650 284840 198711 124582 284050 317050 323770 347270 223160 351270 FALSE FALSE TRUE 234940.5397 262268.241 275657.2209 290033.192 248421.8003 277935.5945 242759.3215 268204.2019 242503.6885 263309.7056 0.892259323 0.996044716 1.046893506 1.1014907 0.943458578 1.055546334 0.921953564 1.018588362 0.920982718 1 18.00640117 -6.762854955 24.9999499 0.966930202 1.008862131 0.092536064 0.061757779 98.71737691 1743340.894 0.024958257 0.017858114 1.73E-07 6.762854955 0.041931929 KLSLQERPAGSYLEAQAGPYATGPASHIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KLSLQERPAGSYLEAQAGPYATGPASHISPR 31 2 J3KPJ3;Q8N5S9;Q8N5S9-2 J3KPJ3 CAMKK1 Calcium/calmodulin-dependent protein kinase kinase 1 1 0 KLSLQERPAGSYLEAQAGPYATGPAS(0.001)HIS(0.999)PR 154.53 2.57E-10 555080000 182890 231810 207130 78517 284270 178040 212440 199320 190230 213040 TRUE FALSE FALSE 170070.3554 213440.5314 287336.2831 182791.544 248614.2059 156075.235 159285.265 153939.1871 206719.2896 159693.3973 1.064980508 1.336564535 1.799299708 1.144640587 1.556822073 0.977343069 0.997444276 0.963967138 1.294476121 1 17.28494514 -6.27227813 24.95499344 1.041318937 1.388190394 0.386397241 0.210164444 746.6306534 1719027.744 0.073316082 0.065279303 5.34E-07 6.27227813 0.346871457 KLSMTR ddPTM_HeLa_A485_30min_R1 1 KLSMTR 6 1 Q969F1 Q969F1 GTF3C6 General transcription factor 3C polypeptide 6 0 0 52.231 0.0090104 0 379020 690570 648220 118500 561710 492960 383370 402840 683700 179890 FALSE FALSE TRUE 463331.6914 771326.1543 888023.5527 124973.3549 505784.1801 518770.6233 301459.8677 304042.8584 820912.3187 135046.7336 3.430898911 5.711549873 6.575675907 0.925408202 3.745252969 3.841415556 2.232263303 2.251389946 6.078727687 1 17.04309922 -5.249665616 24.9983779 2.970570565 5.286592314 0.315647823 1.594779878 922.9235762 1959573.288 0.42196548 0.723359679 5.63E-06 5.249665616 2.316021749 KLSMTR ddPTM_HeLa_A486_30min_R1 1 KLSMTR 6 1 Q969F1 Q969F1 GTF3C6 General transcription factor 3C polypeptide 6 0 0 46.351 0.036584 236600000 745710 1009100 1250100 16403 1018600 732860 366790 445500 1131200 117280 FALSE FALSE TRUE 693439.5799 929135.2409 1734172.199 38187.01296 890837.6899 642447.1844 275015.2625 344069.3752 1229253.327 87912.32464 7.887853981 10.56888491 19.72615564 0.434376103 10.13325144 7.307817044 3.128290187 3.913778604 13.98271894 1 16.42377781 -5.270576328 24.99934133 5.965993371 12.51175707 0.311188921 4.77662302 819.8793627 2243247.207 1.317264917 1.985073599 5.36E-06 5.270576328 6.545763704 KLSPFVLSAGSGS(ph)PSATSILQK ddPTM_HeLa_A485_30min_R1 1 KLSPFVLSAGSGSPSATSILQK 22 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-4 SYNRG Synergin gamma 1 0 KLSPFVLSAGS(0.276)GS(0.723)PS(0.001)ATSILQK 144.12 1.20E-09 82226000 106930 139300 85336 78605 147980 147450 183310 239430 117010 119520 TRUE FALSE FALSE 130716.2096 155589.9233 116905.3375 82898.99211 133246.5916 155170.254 144144.321 180709.4171 140492.8337 89725.8636 1.456839805 1.734058799 1.302916827 0.923914118 1.48504106 1.72938156 1.606496892 2.014017027 1.565800853 1 16.45323628 -6.003588575 24.99625038 1.643445891 1.35619499 0.097390392 0.301453189 284.0129084 1978316.722 0.095496467 0.10603611 9.92E-07 6.003588575 -0.287250901 KLSPFVLSAGSGS(ph)PSATSILQK ddPTM_HeLa_A486_30min_R1 1 KLSPFVLSAGSGSPSATSILQK 22 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-4 SYNRG Synergin gamma 1 0 KLSPFVLS(0.002)AGS(0.259)GS(0.739)PSATSILQK 126.64 1.42E-06 108580000 153420 110930 79656 50261 135500 104220 140220 150910 78931 155810 TRUE FALSE FALSE 142666.0503 102139.5028 110500.9365 117010.1481 118504.3265 91362.39603 105135.4729 116551.0873 85772.80263 116794.1618 1.221516966 0.874525757 0.946116952 1.001849289 1.014642553 0.782251395 0.900177468 0.997918779 0.734392895 1 16.83360863 -6.227489046 24.84067296 0.883894839 0.999913717 0.24242317 0.112860152 946.0165834 692178.6977 0.03596214 0.035960262 5.92E-07 6.227489046 0.116018878 KLSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_HeLa_A485_30min_R1 3 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KLS(0.12)S(0.12)ERPS(0.469)S(0.29)DGEGVVENGITTCNGK;KLS(0.087)S(0.071)ERPS(0.465)S(0.377)DGEGVVENGITTCNGK;KLS(0.115)S(0.115)ERPS(0.385)S(0.385)DGEGVVENGITTCNGK ;; 248.4 6.70E-50 3595570000 1187936 1235553 817850 1196026 1573386 1522212 1980363 2236359 1183568 1602033 TRUE FALSE FALSE 1452188.265 1380040.175 1120406.749 1261361.872 1416734.165 1601912.667 1557242.267 1687888.449 1421099.241 1202675.656 1.207464587 1.147474939 0.9315951 1.048796378 1.177985235 1.331957339 1.294814823 1.403444428 1.181614705 1 20.19781619 -5.983845684 4.305920632 1.270337227 1.078971832 0.259687091 0.121308918 0.233924823 10.41380745 0.039183202 0.042976865 1.04E-06 5.983845684 -0.191365395 KLSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_HeLa_A486_30min_R1 1 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KLS(0.112)S(0.112)ERPS(0.388)S(0.388)DGEGVVENGITTCNGK 176.53 4.96E-15 1280800000 361360 324580 196840 151140 357300 356200 456080 456350 268770 353370 TRUE FALSE FALSE 336030.5301 298859.0987 273061.7196 351861.5582 312484.1023 312255.6656 341963.9601 352449.0671 292067.2 264883.8519 1.268595755 1.128264696 1.030873409 1.328361679 1.179702349 1.178839945 1.290995874 1.330579665 1.102623651 1 18.01500037 -4.220395553 21.30287621 1.189064913 1.268597317 0.047315138 0.110431425 11947.74642 6200322.793 0.027257455 5.994322213 6.02E-05 4.220395553 0.079532404 KLSSERPSS(ph)DGEGVVENGITTCNGK ddPTM_HeLa_A485_30min_R1 1 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KLS(0.04)S(0.04)ERPS(0.173)S(0.746)DGEGVVENGITTCNGK 233.6 5.18E-40 2253100000 724180 690960 451620 741670 950710 790860 1118100 1265300 701470 986110 TRUE FALSE FALSE 885271.3426 771761.7614 618693.0315 782185.5541 856053.9743 832268.2067 879208.801 954983.1911 842248.5947 740290.925 1.195842489 1.042511444 0.835743099 1.056592115 1.156375075 1.124244778 1.187653085 1.290010669 1.137726489 1 19.49773282 -5.702615396 4.197726038 1.165260662 1.015286775 0.218754415 0.105738083 0.282693551 10.04391522 0.033113375 0.042340781 1.98E-06 5.702615396 -0.149973887 KLSSERPSS(ph)DGEGVVENGITTCNGK ddPTM_HeLa_A486_30min_R1 2 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KLSS(0.002)ERPS(0.108)S(0.889)DGEGVVENGITTCNGK;KLSS(0.003)ERPS(0.098)S(0.899)DGEGVVENGITTCNGK ; 238.42 3.68E-49 1059270000 666160 657170 396840 278790 674500 671220 865350 847370 485380 715670 TRUE FALSE FALSE 619465.6241 605093.4558 550507.0757 649037.2093 589897.9205 588411.7009 648830.2773 654442.349 527453.1292 536461.5738 1.154725062 1.127934386 1.026181748 1.209848461 1.099608899 1.096838487 1.209462726 1.219924 0.983207661 1 19.03311531 -7.779672282 24.96749865 0.991603623 1.140114866 0.525811518 0.05747918 225.0203148 308126.144 0.056432963 0.014686148 1.66E-08 7.779672282 0.148511243 KLSSNCSGVEGDVT(ph)DEDEGAEMSQR ddPTM_HeLa_A485_30min_R1 1 KLSSNCSGVEGDVTDEDEGAEMSQR 25 1 H7C276;Q9UPR0-2;Q9UPR0-3;Q9UPR0 H7C276 PLCL2 Phosphoinositide phospholipase C;Inactive phospholipase C-like protein 2 1 0 KLSSNCSGVEGDVT(1)DEDEGAEMSQR 78.642 0.0060536 236730000 54612 54444 45253 68807 84132 62536 87087 92367 56439 85851 TRUE FALSE FALSE 66760.25099 60810.7522 61993.96783 72565.75218 75755.52267 65810.28826 68480.15101 69713.84842 67765.78961 64449.92567 1.035846827 0.943534869 0.961893551 1.125924529 1.175416758 1.021107279 1.062532661 1.081674613 1.051448685 1 15.97589107 -5.250107915 24.92978395 1.078960204 0.976736053 0.402934121 0.051905694 677.2183562 1489910.635 0.01443944 0.024727679 5.62E-06 5.250107915 -0.102224151 KLSSWDQAET(ph)PGHT(ph)PSLR ddPTM_HeLa_A485_30min_R1 7 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 KLSSWDQAET(1)PGHT(1)PSLR;KLS(0.001)S(0.001)WDQAET(0.998)PGHT(0.959)PS(0.041)LR;KLSSWDQAET(1)PGHT(0.993)PS(0.007)LR;KLSSWDQAET(1)PGHT(0.973)PS(0.027)LR;KLS(0.001)S(0.001)WDQAET(0.979)PGHT(0.889)PS(0.13)LR;KLSSWDQAET(1)PGHT(0.956)PS(0.044)LR;KLS(0.003)S(0.003)WDQAET(0.994)PGHT(0.97)PS(0.03)LR ;;;;;; 188.08 2.00E-18 8778690000 4583450 6745910 5174220 4141220 7348710 7198120 8960570 10967060 4954820 5369000 TRUE FALSE FALSE 5603022.64 7534785.493 7088379.295 4367444.362 6617046.63 7575002.433 7046071.018 8277371.339 5949206.926 4030607.109 1.390118781 1.8693922 1.758638117 1.083569855 1.641699737 1.879370087 1.748141366 2.053628924 1.47600765 1 21.94256573 -5.993482324 24.99546145 1.710793614 1.541153612 0 0.330898087 564.2596149 2163931.356 0.100738034 0.113956274 1.02E-06 5.993482324 -0.169640002 KLSSWDQAET(ph)PGHT(ph)PSLR ddPTM_HeLa_A486_30min_R1 4 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 KLSSWDQAET(1)PGHT(0.987)PS(0.013)LR;KLSSWDQAET(1)PGHT(0.984)PS(0.016)LR;KLSSWDQAET(1)PGHT(0.978)PS(0.022)LR;KLSSWDQAET(1)PGHT(0.964)PS(0.036)LR ;;; 171.58 8.04E-13 4256780000 2288290 2201160 1775990 720660 2712810 1976290 2627250 2795670 1715010 2229670 TRUE FALSE FALSE 2127892.688 2026732.065 2463700.891 1677732.9 2372544.074 1732475.433 1969884.262 2159156.97 1863668.448 1671346.119 1.273160995 1.212634559 1.474081797 1.003821339 1.41954084 1.036574898 1.178621375 1.291867044 1.115070317 1 20.6725791 -13.99999847 0.092532638 0.2544755 1.404951611 0.240016661 0.137875298 300.0598424 1.915847458 43.57013069 2.836959154 1.00E-14 13.99999847 1.150476111 KLSSWDQAET(ph)PGHTPSLR ddPTM_HeLa_A485_30min_R1 2 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLSSWDQAET(1)PGHTPSLR;KLSSWDQAET(1)PGHTPSLR ; 170.56 2.20E-12 716690000 461900 704490 528610 446900 753630 738240 844360 1147290 509820 644920 TRUE FALSE FALSE 564648.0615 786873.9773 724164.8363 471313.0154 678595.951 776893.1049 663955.5882 865915.3286 612136.1977 484153.3129 1.1662588 1.62525786 1.495734547 0.973478861 1.401613772 1.604642753 1.371374667 1.788514724 1.264343714 1 18.88510444 -5.99597068 24.99864948 1.458487443 1.329892249 0.007060126 0.25579708 408.0153438 2531369.311 0.077995836 0.088081713 1.01E-06 5.99597068 -0.128595194 KLSSWDQAET(ph)PGHTPSLR ddPTM_HeLa_A486_30min_R1 1 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLSSWDQAET(1)PGHTPSLR 160.57 5.00E-12 179240000 261270 263440 184260 72144 320230 211790 286650 307340 180740 255630 TRUE FALSE FALSE 242956.3222 242564.055 255610.4067 167954.878 280063.7674 185661.5031 214927.1381 237365.3912 196406.6887 191618.5841 1.267916279 1.265869154 1.333954156 0.876506205 1.461568922 0.968911778 1.121640362 1.238738885 1.024987684 1 17.54787796 -1.000000011 0.119323529 0.954089579 2.016361974 0.192668065 0.158781331 166.0982168 1.366803767 1.077939672 29.3099716 0.099999997 1.000000011 1.062272395 KLSSWDQAETPGHT(ph)PSLR ddPTM_HeLa_A485_30min_R1 4 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLSSWDQAETPGHT(0.998)PS(0.002)LR;KLSSWDQAETPGHT(0.954)PS(0.046)LR;KLSSWDQAETPGHT(1)PSLR;KLSSWDQAETPGHT(1)PSLR ;;; 154.95 1.42E-08 2459240000 1224640 2263830 1783240 1126170 2086000 2233860 2429780 3313530 1649290 1632950 TRUE FALSE FALSE 1497056.943 2528565.226 2442934.683 1187689.815 1878310.516 2350821.455 1910637.654 2500881.572 1980287.375 1225885.617 1.221204427 2.062643684 1.9927917 0.968842279 1.532206993 1.917651551 1.558577429 2.040061109 1.615393269 1 20.22539294 KLSSWDQAETPGHT(ph)PSLR ddPTM_HeLa_A486_30min_R1 4 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLSSWDQAETPGHT(0.972)PS(0.028)LR;KLSSWDQAETPGHT(0.984)PS(0.016)LR;KLSSWDQAETPGHT(0.989)PS(0.01)LR;KLSSWDQAETPGHT(0.974)PS(0.026)LR ;;; 201.61 2.75E-25 1278320000 2215750 2067900 1759900 480988 2669300 1786820 2217720 2340580 1715200 2227760 TRUE FALSE FALSE 2060437.367 1904032.073 2441380.412 1119764.372 2334491.504 1566380.315 1662822.999 1807681.029 1863874.917 1669914.396 1.233858078 1.140197412 1.461979379 0.67055196 1.397970764 0.938000367 0.995753437 1.082499219 1.116149979 1 20.67134272 -5.224655902 24.99949412 1.042374718 1.264830107 0.274421643 0.184926275 830.0554484 564137.3503 0.047192052 0.081736153 5.96E-06 5.224655902 0.222455389 KLSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_HeLa_A485_30min_R1 5 KLSVPTSDEEDEVPAPKPR 19 2 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 0 KLS(0.002)VPT(0.998)S(1)DEEDEVPAPKPR;KLS(0.001)VPT(0.999)S(1)DEEDEVPAPKPR;KLS(0.015)VPT(0.989)S(0.997)DEEDEVPAPKPR;KLSVPT(1)S(1)DEEDEVPAPKPR;KLS(0.003)VPT(0.998)S(0.999)DEEDEVPAPKPR ;;;; 153.1 5.44E-08 2684260000 1261040 1057770 758216 1513350 1506590 1372210 2021440 2126280 1149600 2492930 TRUE FALSE FALSE 1541553.997 1181467 1038711.65 1596020.478 1356588.61 1444056.794 1589542.83 1604806.496 1380314.175 1871488.43 0.823704797 0.631298052 0.555019007 0.852808093 0.724871492 0.771608721 0.849346865 0.857502761 0.737548869 1 20.8357547 -9.140570537 0.155573006 1.191334215 0.605929521 0.446181143 0.089323209 14.52970996 0.725513935 1.986920437 0.651677863 7.23E-10 9.140570537 -0.585404693 KLSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_HeLa_A486_30min_R1 5 KLSVPTSDEEDEVPAPKPR 19 2 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 0 KLS(0.109)VPT(0.904)S(0.987)DEEDEVPAPKPR;KLS(0.002)VPT(0.998)S(1)DEEDEVPAPKPR;KLS(0.001)VPT(0.999)S(1)DEEDEVPAPKPR;KLSVPT(1)S(1)DEEDEVPAPKPR;KLS(0.004)VPT(0.997)S(0.999)DEEDEVPAPKPR ;;;; 142.32 1.40E-07 2809810000 2424620 2113930 1065128 1063955 2153290 2343000 2881810 2775480 1630750 3058160 TRUE FALSE FALSE 2254666.659 1946414.488 1477574.087 2476941.009 1883204.29 2053944.482 2160750.657 2143563.792 1772104.723 2292376.831 0.98354975 0.849081382 0.644559859 1.080512146 0.821507295 0.895989025 0.942580918 0.935083518 0.773042503 1 21.12841279 -5.268480728 24.98241641 0.914221112 0.828065435 0.132186875 0.111086121 1210.849019 4296044.304 0.030652172 0.046569396 5.39E-06 5.268480728 -0.086155676 KLSVPTS(ph)DEEDEVPAPKPR ddPTM_HeLa_A485_30min_R1 4 KLSVPTSDEEDEVPAPKPR 19 2 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KLSVPT(0.205)S(0.795)DEEDEVPAPKPR;KLSVPT(0.207)S(0.793)DEEDEVPAPKPR;KLSVPT(0.327)S(0.673)DEEDEVPAPKPR;KLSVPT(0.159)S(0.841)DEEDEVPAPKPR ;;; 176.34 1.43E-13 13385000000 4283460 3967430 2801180 4527680 4915370 4901420 6476800 7504700 3926340 7444100 TRUE FALSE FALSE 5236300.899 4431386.426 3837453.049 4775015.694 4425978.504 5158050.772 5092978.769 5664160.558 4714320.423 5588422.869 0.936990815 0.792958323 0.686679075 0.854447812 0.791990622 0.922988631 0.911344558 1.013552605 0.843586918 1 22.41400976 -6.327674474 4.100726709 0.940169667 0.806505364 0.42461941 0.073064934 0.225354475 7.531253411 0.026389422 0.023425369 4.70E-07 6.327674474 -0.133664303 KLSVPTS(ph)DEEDEVPAPKPR ddPTM_HeLa_A486_30min_R1 6 KLSVPTSDEEDEVPAPKPR 19 2 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KLSVPT(0.039)S(0.961)DEEDEVPAPKPR;KLSVPT(0.418)S(0.582)DEEDEVPAPKPR;KLSVPT(0.026)S(0.974)DEEDEVPAPKPR;KLSVPT(0.164)S(0.836)DEEDEVPAPKPR;KLSVPT(0.026)S(0.974)DEEDEVPAPKPR;KLSVPT(0.098)S(0.902)DEEDEVPAPKPR ;;;;; 197.46 9.15E-26 4715590000 2146290 1836880 1006370 805851 1822890 1888280 2309990 2287330 1553100 2587640 TRUE FALSE FALSE 1995846.154 1691318.939 1396063.416 1876061.853 1594246.138 1655323.212 1732006.069 1766554.891 1687723.958 1939678.101 1.02895741 0.871958568 0.719739742 0.967202678 0.821912738 0.85340099 0.892934796 0.910746422 0.870105177 1 20.88738582 -9.359217921 0.644293169 1.010844698 0.874682074 0.166265389 0.078205066 16.79930812 5.999922185 0.529366667 0.030107268 4.37E-10 9.359217921 -0.136162624 KLT(ph)GMER ddPTM_HeLa_A485_30min_R1 2 KLTGMER 7 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 KLT(1)GMER;KLT(1)GMER ; 106.29 0.0029173 355350000 471640 465370 356110 563270 621870 527700 762600 767650 451380 787670 TRUE FALSE FALSE 576554.6909 519790.9733 487849.908 594040.0138 559954.4393 555329.556 599664.2801 579382.6339 541967.8257 591318.365 0.975032614 0.879037426 0.825020728 1.004602679 0.946959324 0.939138016 1.014114081 0.979815051 0.916541508 1 19.17357556 -5.276557907 24.99417092 0.970147435 0.891630966 0.392521612 0.044753879 797.8281629 1318979.526 0.01269106 0.018910213 5.29E-06 5.276557907 -0.078516469 KLT(ph)GMER ddPTM_HeLa_A486_30min_R1 1 KLTGMER 7 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 KLT(1)GMER 95.573 0.0048054 175100000 138490 140110 88820 70401 147560 153120 197720 196720 115860 198400 TRUE FALSE FALSE 128782.5662 129007.1733 123213.4827 163897.0859 129051.6489 134229.6112 148248.3647 151931.1504 125902.8381 148719.3486 0.865943587 0.867453862 0.828496654 1.102056238 0.867752919 0.902569924 0.996833069 1.021596395 0.84658008 1 17.18223283 KLT(ph)PSAGK ddPTM_HeLa_A485_30min_R1 1 KLTPSAGK 8 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 KLT(0.917)PS(0.083)AGK 74.376 0.011645 616830000 1472200 1264500 750720 1370500 1622000 1522700 1863100 2113800 1320000 2141200 TRUE FALSE FALSE 1799685.811 1412372.275 1028442.568 1445366.945 1460507.985 1602426.217 1465033.465 1595387.236 1584911.892 1607438.246 1.119598725 0.878647923 0.639802226 0.899174166 0.908593527 0.996881978 0.911408864 0.992502972 0.985986178 1 20.61633188 -5.999609073 2.786998784 0.972598977 0.866951779 0.131424034 0.110611474 0.552728322 8.702340869 0.040019288 0.043533663 1.00E-06 5.999609073 -0.105647199 KLT(ph)SDEEGEPSGK ddPTM_HeLa_A485_30min_R1 1 KLTSDEEGEPSGK 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KLT(0.758)S(0.242)DEEGEPSGK 128.59 2.11E-05 472540000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 KLTAS(ph)PSDPK ddPTM_HeLa_A485_30min_R1 2 KLTASPSDPK 10 1 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 KLT(0.06)AS(0.938)PS(0.002)DPK;KLT(0.04)AS(0.849)PS(0.111)DPK ; 84.468 0.0028203 459240000 932430 741640 481600 1508360 991210 1056610 1641080 1561250 768730 2073840 TRUE FALSE FALSE 1139845.837 828368.3466 659763.881 1590757.887 892521.6521 1111932.466 1290449.852 1178350.99 923007.0598 1556869.854 0.732139449 0.532072957 0.423775873 1.021766773 0.573279552 0.714210287 0.828874583 0.756871865 0.59286077 1 20.57021692 -14 0.125677585 1.979385638 0.554579013 0.256011194 0.159875415 210.3288497 1.68529428 52.66577578 1.352480629 1.00E-14 14 -1.424806625 KLTAS(ph)PSDPK ddPTM_HeLa_A486_30min_R1 2 KLTASPSDPK 10 1 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 KLT(0.002)AS(0.998)PS(0.001)DPK;KLT(0.036)AS(0.942)PS(0.022)DPK ; 135.58 2.67E-05 355320000 1020840 865720 364640 568280 786030 1115770 1424260 1310230 721060 1941950 TRUE FALSE FALSE 949284.3876 797117.1943 505838.3734 1322984.559 687438.788 978117.6417 1067895.084 1011919.231 783562.0614 1455673.08 0.65212746 0.547593553 0.347494489 0.908847307 0.47224806 0.671934966 0.733609145 0.695155557 0.538281618 1 20.47325496 -14 0.201509012 2.717426974 0.560842604 0.378081786 0.146402344 148.606067 1.472281333 102.9602596 0.338153356 1.00E-14 14 -2.15658437 KLTAT(ph)PT(ph)PLGGMTGFHMQTEDR ddPTM_HeLa_A485_30min_R1 1 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 KLT(0.052)AT(0.948)PT(0.978)PLGGMT(0.021)GFHMQTEDR 69.578 0.0025653 559520000 0 4195 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 4685.568758 0 0 0 0 0 0 0 0 0 KLTAT(ph)PT(ph)PLGGMTGFHMQTEDR ddPTM_HeLa_A486_30min_R1 2 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 KLT(0.017)AT(0.983)PT(1)PLGGMTGFHMQTEDR;KLT(0.014)AT(0.986)PT(1)PLGGMTGFHMQTEDR ; 223.15 1.99E-36 916360000 614200 540320 355740 242935 600510 637470 779700 779030 480010 785620 TRUE FALSE FALSE 571147.7517 497503.0754 493492.055 565564.9573 525188.4363 558825.4327 584610.8132 601661.8751 521617.6533 588895.6385 0.969862425 0.84480686 0.837995772 0.960382316 0.891819198 0.948937972 0.992723965 1.021678267 0.885755674 1 19.16765246 -6.407292882 3.047742251 0.976754048 0.897175447 0.313450779 0.05171626 0.317191783 5.627143975 0.019919041 0.016965997 3.91E-07 6.407292882 -0.079578602 KLTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_HeLa_A485_30min_R1 1 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLT(0.048)AT(0.715)PT(0.237)PLGGMTGFHMQTEDR 215.98 7.89E-36 1460300000 606380 846700 703870 694100 1034900 846590 1107500 1266200 797580 1013800 TRUE FALSE FALSE 741267.139 945714.1997 964260.8035 732016.9254 931861.7222 890916.1433 870873.5776 955662.4647 957646.9902 761078.3176 0.973969593 1.242597743 1.266966594 0.961815504 1.224396623 1.170597194 1.144262762 1.255669019 1.258276537 1 19.53768539 KLTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_HeLa_A486_30min_R1 2 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLT(0.028)AT(0.729)PT(0.243)PLGGMTGFHMQTEDR;KLT(0.021)AT(0.979)PT(0.001)PLGGMTGFHMQTEDR ; 249.88 1.88E-47 1907170000 2327040 2016460 1304000 636550 2322610 2072160 2332540 2520130 1677940 2498150 TRUE FALSE FALSE 2163926.513 1856668.366 1808943.722 1481920.569 2031286.596 1816517.967 1748913.821 1946351.413 1823385.19 1872596.98 1.155575138 0.991493838 0.966008032 0.791371868 1.08474307 0.970052813 0.933950999 1.039386175 0.973720032 1 20.83660901 -4.26137559 3.430892249 0.968144145 1.17928903 0.369889733 0.072214305 0.329690509 6.632133642 0.018323698 0.182119977 5.48E-05 4.26137559 0.211144884 KLTGIKHELQANCYEEVKDR ddPTM_HeLa_A485_30min_R1 1 KLTGIKHELQANCYEEVKDR 20 3 P23528;E9PP50;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 123.43 2.61E-07 295520000 305200 333210 191710 282860 395730 467760 658030 912020 268600 453680 FALSE FALSE TRUE 373090.6871 372176.011 262631.5067 298311.9256 356329.7317 492251.1903 517436.5149 688345.665 322505.5563 340585.9254 1.095437771 1.092752176 0.771116735 0.875878606 1.046225652 1.445306907 1.519253957 2.021063155 0.946913928 1 18.37765929 -6.214448407 3.772036284 1.462382995 0.956195884 0.312371327 0.295736877 0.242286976 7.231829484 0.100985162 0.097910272 6.10E-07 6.214448407 -0.50618711 KLTS(ph)DEEGEPSGK ddPTM_HeLa_A485_30min_R1 4 KLTSDEEGEPSGK 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KLT(0.184)S(0.815)DEEGEPS(0.001)GK;KLT(0.341)S(0.659)DEEGEPSGK;KLT(0.162)S(0.838)DEEGEPSGK;KLT(0.197)S(0.803)DEEGEPSGK ;;; 255.21 9.16E-41 5273490000 4269100 3025910 2214710 7342650 4382050 4381810 7357970 6536890 3413870 9612140 TRUE FALSE FALSE 5218746.567 3379763.853 3034023.391 7743760.377 3945757.716 4611234.796 5785879.6 4933707.478 4099002.395 7216010.396 0.723217717 0.468370147 0.420457181 1.073135978 0.546805991 0.639028292 0.801811428 0.683716792 0.568042751 1 22.78276999 -14 0.244868001 2.962357633 0.627772875 0.244049971 0.177382814 263.8068977 2.627185193 259.0749619 0.272173105 1.00E-14 14 -2.334584757 KLTS(ph)DEEGEPSGK ddPTM_HeLa_A486_30min_R1 4 KLTSDEEGEPSGK 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KLT(0.298)S(0.702)DEEGEPSGK;KLT(0.343)S(0.657)DEEGEPSGK;KLT(0.173)S(0.827)DEEGEPSGK;KLT(0.016)S(0.983)DEEGEPS(0.002)GK ;;; 188.1 1.45E-17 7507900000 8469270 7711350 3420388 4580826 6672010 10125540 13325950 11788930 6237880 14826620 TRUE FALSE FALSE 7875617.908 7100274.542 4744853.835 10664394.43 5835144.292 8876353.824 9991656.362 9104847.99 6778584.461 11113937.85 0.708625333 0.638862178 0.426928232 0.959551383 0.525029416 0.798668658 0.899020356 0.819227902 0.609917435 1 23.40586674 -6.060916959 0.902968316 0.824457517 0.625706786 0.198476584 0.160938654 1.010562966 1.7989124 0.089571627 0.102387325 8.69E-07 6.060916959 -0.198750731 KLTS(ph)DEEGEPSGKR ddPTM_HeLa_A485_30min_R1 3 KLTSDEEGEPSGKR 14 2 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KLT(0.062)S(0.938)DEEGEPSGKR;KLT(0.021)S(0.979)DEEGEPSGKR;KLT(0.114)S(0.886)DEEGEPSGKR ;; 150.7 2.44E-08 6204680000 1375460 1235480 804650 1876020 1775180 1653980 2781760 2971200 1215010 2561930 TRUE FALSE FALSE 1681426.332 1379958.639 1102323.519 1978502.222 1598436.846 1740579.835 2187414.251 2242508.541 1458851.362 1923288 0.874245735 0.717499739 0.573145322 1.028708245 0.831095939 0.905002181 1.137330577 1.165976464 0.758519453 1 20.87514338 -5.73266034 1.211388219 1.011511051 0.735436278 0.324362044 0.14685975 0.5216067 1.611735977 0.060697037 0.091076809 1.85E-06 5.73266034 -0.276074772 KLTS(ph)DEEGEPSGKR ddPTM_HeLa_A486_30min_R1 3 KLTSDEEGEPSGKR 14 2 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KLT(0.041)S(0.959)DEEGEPSGKR;KLT(0.495)S(0.498)DEEGEPS(0.007)GKR;KLT(0.132)S(0.868)DEEGEPSGKR ;; 116.51 6.94E-05 821770000 818961 708062 381812 450669 828395 855424 1152792 1119120 542623 1292920 TRUE FALSE FALSE 761556.063 651952.5884 529659.8317 1049180.208 724489.9746 749890.4842 864351.2486 864320.8062 589657.9985 969164.4165 0.78578624 0.672695548 0.546511843 1.082561627 0.747540832 0.773749502 0.891852026 0.891820615 0.608418952 1 19.88638191 -14 0.044244554 1.766423076 0.349591872 0.144008463 0.148469898 1408.726467 4.626819937 141.7548631 37.50925552 1.00E-14 14 -1.416831203 KLTS(ph)TPR ddPTM_HeLa_A486_30min_R1 1 KLTSTPR 7 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 KLT(0.092)S(0.454)T(0.454)PR 60.91 0.020833 510320000 940460 797850 625510 336050 738570 800690 819240 699300 655110 856660 TRUE FALSE FALSE 874538.6105 734625.4603 867724.2237 782341.383 645931.6637 701909.0086 614257.487 540084.6556 711895.4623 642146.7601 1.361898346 1.144014898 1.351286462 1.218321779 1.005894141 1.09306634 0.956568693 0.841061093 1.108618008 1 19.29254353 -5.718926801 3.403900637 0.992191452 1.274344931 0.68944908 0.088748162 0.136502396 3.250597997 0.027521059 0.035019232 1.91E-06 5.718926801 0.282153479 KLVIIEGDLER ddPTM_HeLa_A485_30min_R1 3 KLVIIEGDLER 11 1 J3KN67;A0A087WWU8;P06753-5;P06753-2;A0A2R2Y2Q3;P06753;A0A494C0P6;P06753-4;P06753-3;P06753-6;P06753-7 J3KN67 TPM3 Tropomyosin alpha-3 chain 0 0 ;; ;; 151.78 0.00011523 226422000 370316 512304 467261 342554 561350 516856 551148 695540 465094 476382 FALSE FALSE TRUE 452691.5166 572213.4963 640120.2883 361266.8576 505460.023 543917.7809 433390.7273 524957.7244 558434.0997 357628.7346 1.265814161 1.60002103 1.789901723 1.010172905 1.413365242 1.520900667 1.211845373 1.467884635 1.561491138 1 18.44810313 -10.33602129 3.382866591 0.997609281 1.427596535 0.273086708 0.208906422 143931579.5 225418823.9 3555206.994 0.053513059 4.61E-11 10.33602129 0.429987254 KLVIIEGDLER ddPTM_HeLa_A486_30min_R1 4 KLVIIEGDLER 11 1 J3KN67;A0A087WWU8;P06753-5;P06753-2;A0A2R2Y2Q3;P06753;A0A494C0P6;P06753-4;P06753-3;P06753-6;P06753-7 J3KN67 TPM3 Tropomyosin alpha-3 chain 0 0 ;;; ;;; 137.59 0.00045421 472562000 466942 432611 369703 182085 576623 418710 466551 490329 369009 460289 FALSE FALSE TRUE 434211.7771 398329.3288 512861.9026 423903.0821 504297.5665 367053.8173 349815.0051 378691.7905 400994.9972 345029.6384 1.258476747 1.154478585 1.486428543 1.228599039 1.461606513 1.063832716 1.013869437 1.097563074 1.162204497 1 18.39636077 -6.285079641 24.57414732 1.070240064 1.313237466 0.599289259 0.102338501 459.6989935 477857.2761 0.035547687 0.03136891 5.19E-07 6.285079641 0.242997403 KLVPIKPAPLPLS(ph)PGK ddPTM_HeLa_A485_30min_R1 1 KLVPIKPAPLPLSPGK 16 2 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 1 0 KLVPIKPAPLPLS(1)PGK 123.6 1.13E-05 201140000 337800 227970 146700 478520 267070 267210 418770 326900 227980 624870 TRUE FALSE FALSE 412942.4446 254629.1084 200970.4347 504660.3359 240479.5731 281200.7024 329296.3685 246727.2624 273733.4948 469101.4089 0.880283957 0.542801841 0.428415756 1.075802218 0.512638778 0.599445444 0.70197267 0.525957198 0.583527335 1 18.83954031 -11.11942385 2.232598122 1.655423742 0.645281451 0.24492222 0.184137961 20462396.79 5300601.249 67990182.28 0.045958524 7.60E-12 11.11942385 -1.010142291 KLVPIKPAPLPLS(ph)PGK ddPTM_HeLa_A486_30min_R1 2 KLVPIKPAPLPLSPGK 16 2 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 1 0 KLVPIKPAPLPLS(1)PGK;KLVPIKPAPLPLS(1)PGK ; 148.44 2.71E-08 602650000 828650 714850 290818 366050 477380 814020 976020 789890 573790 1250950 TRUE FALSE FALSE 770565.9142 658202.6826 403430.518 852182.8991 417502.549 713594.4887 731809.4727 610049.2902 623526.5792 937703.9777 0.82175818 0.701930138 0.430232278 0.90879736 0.445239179 0.761001879 0.780426969 0.650577693 0.66495034 1 19.83877303 -10.46556502 2.817631791 1.009897937 0.681557279 0.300096411 0.144236642 21505269.85 23526615.73 1673599.629 0.036322413 3.42E-11 10.46556502 -0.328340658 KLVPIKPAPLPLS(ph)PGKNSFGILSSK ddPTM_HeLa_A485_30min_R1 1 KLVPIKPAPLPLSPGKNSFGILSSK 25 3 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 1 0 KLVPIKPAPLPLS(1)PGKNSFGILSSK 208.58 1.06E-28 348810000 430030 366200 182670 455180 457830 578510 859200 1012500 339200 690640 TRUE FALSE FALSE 525688.6899 409023.9045 250247.2345 480045.3308 412246.8377 608799.8891 675624.901 764182.7875 407274.3287 518476.1583 1.013911019 0.788896264 0.482659097 0.925877349 0.795112429 1.174209999 1.303097337 1.4739015 0.785521807 1 18.98391812 -6.264279165 5.925580963 1.188188522 0.78860916 0.389309256 0.213453306 0.150467796 23.2367672 0.07365122 0.068758544 5.44E-07 6.264279165 -0.399579362 KLVPIKPAPLPLS(ph)PGKNSFGILSSK ddPTM_HeLa_A486_30min_R1 2 KLVPIKPAPLPLSPGKNSFGILSSK 25 3 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 1 0 KLVPIKPAPLPLS(0.993)PGKNS(0.007)FGILSSK;KLVPIKPAPLPLS(1)PGKNSFGILSSK ; 210.06 8.33E-29 880460000 1450800 1017440 486920 638510 1095450 1234760 1834280 1647540 834660 1970510 TRUE FALSE FALSE 1349106.412 936814.3489 675468.4642 1486483.549 958048.4463 1082427.865 1375323.743 1272431.108 907009.0008 1477081.47 0.913359513 0.634233363 0.457299396 1.006365308 0.648609075 0.732815276 0.931108927 0.861449509 0.614054823 1 20.49431797 -6.260650443 0.9474404 0.83744909 0.70669334 0.075558562 0.171807745 1.57832468 3.020048187 0.10293835 0.09440377 5.49E-07 6.260650443 -0.13075575 KLVQTTYECLMQAIDAVKPGVR ddPTM_HeLa_A485_30min_R1 2 KLVQTTYECLMQAIDAVKPGVR 22 2 P53582 P53582 METAP1 Methionine aminopeptidase 1 0 0 ; ; 111.18 2.45E-06 9153200 8832.2 8361.6 7768.4 9395.7 11456.6 14211.8 16459.1 19587.3 7250.6 11107.1 FALSE FALSE TRUE 10796.89242 9339.416384 10642.25443 9908.9633 10315.94068 14955.90787 12942.47883 14783.48396 8705.728914 8338.304381 1.294854676 1.12006182 1.27630918 1.188366705 1.237174875 1.793638993 1.552171549 1.772960459 1.044064658 1 13.02553832 -6.043454692 24.97658383 1.491358582 1.216292974 0.126823984 0.252129052 696.7085271 400447.6832 0.079397222 0.079402447 9.05E-07 6.043454692 -0.275065608 KLVQTTYECLMQAIDAVKPGVR ddPTM_HeLa_A486_30min_R1 1 KLVQTTYECLMQAIDAVKPGVR 22 2 P53582 P53582 METAP1 Methionine aminopeptidase 1 0 0 152.32 8.77E-13 2783200 2488.9 3112.8 2793.5 2314.5 4023.4 3409.6 4362.3 4349.2 3388.2 3987.7 FALSE FALSE TRUE 2314.440963 2866.130391 3875.218013 5388.272968 3518.747655 2988.958218 3270.8064 3358.982102 3681.891904 2989.153964 0.774279609 0.958843347 1.296426366 1.80260804 1.177171767 0.999934515 1.0942248 1.123723349 1.231750505 1 11.54552149 -6.006244977 24.99336427 1.096886309 1.233220025 0.043031783 0.255305481 1052.761037 4213335.223 0.089354026 0.097891167 9.86E-07 6.006244977 0.136333716 KLVWVPSDK ddPTM_HeLa_A486_30min_R1 1 KLVWVPSDK 9 1 P35579;Q5BKV1;B1AH99 P35579 MYH9 Myosin-9 0 0 72.652 0.0033193 0 421620 397490 256390 270540 526460 467310 494240 497870 299160 500890 FALSE FALSE TRUE 392066.6152 365991.4448 355671.0744 629830.7923 460426.4778 409658.0435 370575.9245 384515.8694 325091.4297 375463.8838 1.04421925 0.974771371 0.947284385 1.677473705 1.226286995 1.091071768 0.986981546 1.024108805 0.865839416 1 18.51831461 -6.631356966 3.006742109 0.968482053 1.177110796 0.196548994 0.194812328 0.490332659 8.899253072 0.089805368 0.066553072 2.34E-07 6.631356966 0.208628743 KLVYLYLMNYAK ddPTM_HeLa_A485_30min_R1 2 KLVYLYLMNYAK 12 1 K7ERB2;C9J1E7;A0A087WYD1;A0A087WU93;A0A087WZQ6;A0A087X253;P63010-3;Q10567-4;P63010;Q10567-3;Q10567-2;Q10567;P63010-2;K7EJX1;K7EN71 K7ERB2 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 0 ; ; 178.67 2.85E-09 41353000 60452 65274 50971 68543 76486 66610 93950 97554 37427 102503 FALSE FALSE TRUE 73899.33884 72907.22649 69827.29398 72287.33053 68870.78528 70097.5966 73876.815 73628.72854 44938.2556 76950.88853 0.960344192 0.947451393 0.907426741 0.939395658 0.894996622 0.910939405 0.960051488 0.956827529 0.583986182 1 16.23165036 KLVYLYLMNYAK ddPTM_HeLa_A486_30min_R1 2 KLVYLYLMNYAK 12 1 K7ERB2;C9J1E7;A0A087WYD1;A0A087WU93;A0A087WZQ6;A0A087X253;P63010-3;Q10567-4;P63010;Q10567-3;Q10567-2;Q10567;P63010-2;K7EJX1;K7EN71 K7ERB2 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 0 ; ; 146.16 0.00014383 25931000 44914 44868 38280 25235.2 57461 49495 68951 59427 43014 70540 FALSE FALSE TRUE 41765.76054 41312.49627 53103.04117 58748.82092 50253.70558 43388.81013 51698.73051 45896.76938 46742.48815 52876.32486 0.789876389 0.78130423 1.004287672 1.111060972 0.950400878 0.820571593 0.97772927 0.868002258 0.883996539 1 15.69033429 -4.750184967 24.82324246 0.949139731 0.785590187 0.424193086 0.077497709 207.9105037 458567.4037 0.021637543 0.056109097 1.78E-05 4.750184967 -0.163549544 KLWGDR ddPTM_HeLa_A485_30min_R1 2 KLWGDR 6 1 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 97.602 0.031581 1407370000 2266000 3186500 2854300 2423600 3915600 3526900 4016100 4057600 3115400 3590400 FALSE FALSE TRUE 2770063.882 3559133.456 3910224.347 2555995.131 3525749.115 3711563.03 3158027.426 3062467.238 3740632.204 2695379.356 1.027708354 1.32045734 1.450713918 0.948287715 1.308071573 1.377009519 1.171644881 1.136191546 1.387794336 1 21.36205691 -10.15863478 3.847506292 0.999865093 1.23811806 0.17224712 0.155449556 23494436 45517181.96 38944.45476 0.037855954 6.94E-11 10.15863478 0.238252967 KLWGDR ddPTM_HeLa_A486_30min_R1 1 KLWGDR 6 1 P13639 P13639 EEF2 Elongation factor 2 0 0 95.62 0.033358 589640000 1301200 1417900 1127000 483770 1716400 1331800 1456800 1442400 1217500 1450000 FALSE FALSE TRUE 1209992.599 1305540.44 1563404.582 1126241.008 1501113.107 1167496.057 1092293.232 1113997.007 1323033.88 1086910.562 1.113240262 1.201147993 1.438393035 1.036185541 1.381082455 1.07414179 1.004952265 1.024920583 1.217242638 1 20.0518018 -6.419127121 10.32198329 1.060409455 1.232454681 0.323602796 0.122799835 0.557574124 52.15683023 0.041798904 0.036841395 3.81E-07 6.419127121 0.172045227 KLYESLLVGS(ph)LPDMNK ddPTM_HeLa_A485_30min_R1 1 KLYESLLVGSLPDMNK 16 1 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 1 0 KLYESLLVGS(1)LPDMNK 86.357 0.00073791 66243000 118920 145470 88811 142230 163820 156930 207150 241980 110560 208810 TRUE FALSE FALSE 145373.3437 162481.4511 121665.8846 149999.6648 147509.5056 165146.6121 162890.7102 182634.0256 132748.3779 156757.5099 0.92737722 1.036514622 0.776140708 0.956889816 0.941004394 1.05351643 1.039125401 1.165073531 0.846839032 1 17.25817504 -6.166030508 4.329986197 1.032274725 0.924594088 0.192049777 0.094500169 0.355391995 11.6077821 0.031239887 0.031149713 6.82E-07 6.166030508 -0.107680637 KLYESLLVGS(ph)LPDMNK ddPTM_HeLa_A486_30min_R1 1 KLYESLLVGSLPDMNK 16 1 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 1 0 KLYESLLVGS(1)LPDMNK 113.17 9.22E-05 70289000 194070 185200 95038 82658 162230 182840 218850 211380 132120 224130 TRUE FALSE FALSE 180466.6952 170524.0775 131839.2588 192432.0013 141881.6007 160283.0598 164091.4152 163253.3884 143572.268 168006.3892 1.074165668 1.01498567 0.784727649 1.145385019 0.84450122 0.95402955 0.97669747 0.971709405 0.854564334 1 17.35815657 -4.531311928 24.97631336 0.942895997 1.059370748 0.172202854 0.094381942 255.5366498 756816.3131 0.022426952 0.059543871 2.94E-05 4.531311928 0.116474751 KMAFEFDINSDS(ph)S(ph)ETTDLLSMVSEEETLK ddPTM_HeLa_A485_30min_R1 1 KMAFEFDINSDSSETTDLLSMVSEEETLK 29 1 A0A087WZC3;Q15431 A0A087WZC3 SYCP1 Synaptonemal complex protein 1 2 0 KMAFEFDINS(0.295)DS(0.343)S(0.353)ET(0.352)T(0.341)DLLS(0.258)MVS(0.057)EEETLK 67.353 0.0074161 3819300000 50499 276710 263370 9008.9 262140 122680 84047 158710 167890 0 TRUE FALSE FALSE 61732.32833 309068.8274 360801.5227 9501.033395 236040.4212 129103.3351 66089.67185 119786.1237 201583.983 0 0 KMANSS(ph)PVLSK ddPTM_HeLa_A485_30min_R1 1 KMANSSPVLSK 11 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 0 KMANS(0.179)S(0.821)PVLSK 82.578 0.0032352 604490000 719070 769280 509330 696390 922310 911650 1160500 1207800 720730 974340 TRUE FALSE FALSE 879024.6407 859240.6042 697752.362 734432.0223 830481.578 959382.5843 912549.6946 911585.1562 865373.9001 731454.9694 1.201748129 1.174700617 0.953923879 1.004070043 1.135383055 1.31160854 1.247581509 1.246262852 1.18308568 1 19.48040952 -6.006789805 24.19780377 1.217025104 1.079462836 0.206094913 0.102202924 278.1132429 991159.2224 0.032914722 0.035943431 9.84E-07 6.006789805 -0.137562268 KMANSS(ph)PVLSK ddPTM_HeLa_A486_30min_R1 2 KMANSSPVLSK 11 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 0 KMANS(0.233)S(0.767)PVLSK;KMANS(0.166)S(0.834)PVLSK ; 103.88 0.00053243 495990000 2238700 1916090 1179900 804570 2169500 1986140 2306000 2379600 1504990 2404300 TRUE FALSE FALSE 2081778.691 1764252.05 1636788.879 1873079.621 1897381.08 1741110.24 1729014.41 1837817.026 1635443.745 1802247.631 1.155101361 0.978917669 0.908193109 1.03930203 1.052786003 0.966077142 0.959365617 1.019736131 0.907446744 1 20.78136582 -4.26069057 24.27619134 0.982529164 1.155101442 0.554451609 0.046724995 32.2310999 1044622.654 0.011748655 0.068200046 5.49E-05 4.26069057 0.172572278 KMCLFAGFQR ddPTM_HeLa_A485_30min_R1 2 KMCLFAGFQR 10 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 132.78 0.00099084 173145000 202768 278346 243499 185038 312920 282645 345480 401870 176683 276861 FALSE FALSE TRUE 247873.0421 310896.1434 333579.4129 195146.1574 281764.5861 297443.8551 271665.3757 303310.7524 212141.6575 207844.6479 1.192588044 1.495810195 1.604945887 0.938903933 1.355649947 1.431087392 1.30705976 1.459314711 1.020674141 1 17.66514607 -7.774643923 24.31320474 1.010336442 1.349651212 0.377854636 0.173390219 198.3598293 365219.3413 0.163481461 0.043305709 1.68E-08 7.774643923 0.33931477 KMCLFAGFQR ddPTM_HeLa_A486_30min_R1 2 KMCLFAGFQR 10 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 132.78 0.00099084 159791000 299750 269310 240420 101116 333840 257370 313800 293150 233610 341660 FALSE FALSE TRUE 278739.0729 247968.8948 333517.0627 235403.1581 291966.6743 225618.3061 235283.921 226406.1444 253859.5029 256106.1122 1.088373372 0.968227164 1.302261238 0.919162593 1.140022281 0.880956351 0.918697016 0.88403257 0.991227819 1 17.96638216 -6.264630289 24.98795593 0.926716926 1.080210609 0.343162039 0.102440071 310.2508201 2429555.964 0.033623195 0.030923632 5.44E-07 6.264630289 0.153493683 KMDTTT(ph)PLKGIPK ddPTM_HeLa_A485_30min_R1 1 KMDTTTPLKGIPK 13 2 H0Y3X6;A0A0C4DFX9;Q9H3P2;H7C2C7;C9JEM7;C9JHL4 H0Y3X6 NELFA Negative elongation factor A 1 0 KMDT(0.008)T(0.068)T(0.924)PLKGIPK 119.31 0.00011338 291570000 220220 199570 102390 233110 247160 260960 398010 474630 153590 335730 TRUE FALSE FALSE 269207.1792 222907.9755 140268.3218 245844.209 222551.8826 274623.4621 312971.9121 358226.2483 184414.1042 252038.6897 1.068118469 0.884419673 0.55653488 0.975422501 0.883006823 1.089608355 1.241761384 1.421314516 0.731689664 1 17.94328569 -6.269722188 3.104621045 1.138075478 0.856769585 0.216836517 0.206166937 0.349801143 6.924798245 0.075881362 0.070166735 5.37E-07 6.269722188 -0.281305892 KMDTTT(ph)PLKGIPK ddPTM_HeLa_A486_30min_R1 1 KMDTTTPLKGIPK 13 2 H0Y3X6;A0A0C4DFX9;Q9H3P2;H7C2C7;C9JEM7;C9JHL4 H0Y3X6 NELFA Negative elongation factor A 1 0 KMDT(0.102)T(0.102)T(0.796)PLKGIPK 87.932 0.0017556 146920000 136960 103620 48275 67493 124070 128630 168070 172480 89179 199170 TRUE FALSE FALSE 127359.8113 95408.77382 66968.37285 157127.1149 108507.9837 112760.9384 126017.1083 133210.0692 96909.10752 149296.5356 0.853066086 0.639055511 0.448559456 1.052449839 0.726795054 0.755281681 0.844072555 0.892251576 0.649104864 1 17.18782116 -14 0.104333754 1.726289152 0.618365619 0.166204501 0.156727593 316.9115267 2.223997971 50.13283308 2.337568607 1.00E-14 14 -1.107923533 KMEES(ph)DEEAVQAK ddPTM_HeLa_A485_30min_R1 2 KMEESDEEAVQAK 13 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK ; 170.61 2.51E-12 2050900000 2099540 1616110 1111940 3174000 2517200 2206200 3777700 3793000 1754620 4309200 TRUE FALSE FALSE 2566575.43 1805100.006 1523292.878 3347387.583 2266578.73 2321713.221 2970563.534 2862760.803 2106756.14 3234995.745 0.793378302 0.557991462 0.470879407 1.0347425 0.700643496 0.717686638 0.918258869 0.884934952 0.651239231 1 21.62533238 -3.492916147 0.074388291 1.240989762 2.15E-12 0.220903332 0.15658509 196.9752559 1.861521656 7.706876491 28.80422099 0.000321428 3.492916147 -1.240989762 KMEES(ph)DEEAVQAK ddPTM_HeLa_A486_30min_R1 5 KMEESDEEAVQAK 13 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK ;;;; 194.94 2.45E-17 2623320000 3584740 3273330 1400160 2069560 3602770 4208960 5476620 5126550 2683440 5866590 TRUE FALSE FALSE 3333468.238 3013939.41 1942339.45 4818040.27 3150876.992 3689701.309 4106311.75 3959346.477 2916042.74 4397557.679 0.758027178 0.685366658 0.441685952 1.0956173 0.71650612 0.839034204 0.933770982 0.900351233 0.663105058 1 22.06827107 -5.256185265 24.99782673 0.868117384 0.634060619 0.400285313 0.139774318 466.8534965 2221170.923 0.037251881 0.062124074 5.54E-06 5.256185265 -0.234056765 KMGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_HeLa_A485_30min_R1 6 KMGAPESGLAEYLFDKHTLGDSDNES 26 2 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 KMGAPESGLAEYLFDKHTLGDS(0.994)DNES(0.006);KMGAPESGLAEYLFDKHT(0.005)LGDS(0.969)DNES(0.026);KMGAPESGLAEYLFDKHTLGDS(1)DNES;KMGAPESGLAEYLFDKHT(0.016)LGDS(0.866)DNES(0.118);KMGAPESGLAEYLFDKHT(0.002)LGDS(0.996)DNES(0.001);KMGAPESGLAEYLFDKHTLGDS(0.999)DNES(0.001) ;;;;; 180.71 1.99E-20 21253428000 2867847 3224516 2117030 2016482 3690619 4749430 5992530 8176660 2494115 3240481 TRUE FALSE FALSE 3505789.671 3601595.097 2900207.494 2126637.306 3323168.014 4998102.811 4712177.011 6171321.314 2994661.003 2432688.723 1.441117245 1.480499771 1.192181912 0.874192117 1.366047362 2.054559123 1.937024234 2.536831472 1.231008708 1 21.2141203 -6.14487979 5.454869828 1.857205167 1.24511091 0.220948764 0.432654436 0.282900538 11.62824822 0.140441157 0.140757747 7.16E-07 6.14487979 -0.612094257 KMGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_HeLa_A486_30min_R1 7 KMGAPESGLAEYLFDKHTLGDSDNES 26 2 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 KMGAPESGLAEYLFDKHTLGDS(1)DNES;KMGAPESGLAEYLFDKHTLGDS(0.999)DNES;KMGAPESGLAEYLFDKHT(0.001)LGDS(0.996)DNES(0.003);KMGAPESGLAEYLFDKHTLGDS(1)DNES;KMGAPESGLAEYLFDKHT(0.004)LGDS(0.994)DNES(0.002);KMGAPESGLAEYLFDKHTLGDS(1)DNES;KMGAPESGLAEYLFDKHT(0.001)LGDS(0.963)DNES(0.036) ;;;;;; 200.68 1.35E-28 14602420000 4826150 3590786 2753005.5 2011443 6109320 4337742 6374640 6658860 3282585 5793647.9 TRUE FALSE FALSE 4487861.807 3306239.04 3819042.958 4682740.957 5343032.118 3802595.495 4779637.648 5142782.94 3567122.111 4342880.756 1.033383613 0.761300903 0.87938011 1.078256858 1.230296759 0.875592886 1.100568474 1.184187002 0.821372336 1 22.05022091 -5.255719597 23.47726669 1.052561172 0.878349441 0.205973203 0.133096212 275.6726173 1131508.184 0.035404801 0.059108504 5.55E-06 5.255719597 -0.174211731 KMIDQVFGVLES(ph)PELSR ddPTM_HeLa_A485_30min_R1 2 KMIDQVFGVLESPELSR 17 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 KMIDQVFGVLES(1)PELSR;KMIDQVFGVLES(0.943)PELS(0.057)R ; 170.65 2.21E-12 143438000 158414 223955 181870 142072 239070 231999 279454 353124 177005 189143 TRUE FALSE FALSE 193652.6478 250144.5891 249151.2812 149833.0336 215267.3514 244146.1089 219746.37 266519.7853 212528.2799 141993.131 1.363817013 1.761666831 1.754671367 1.055213252 1.516040599 1.719421969 1.547584509 1.876990693 1.49675043 1 17.11546161 -6.020907309 23.95051083 1.587904484 1.493356154 0 0.283806268 2336.914083 2677066.66 0.09207795 0.093182683 9.53E-07 6.020907309 -0.09454833 KMIDQVFGVLES(ph)PELSR ddPTM_HeLa_A486_30min_R1 2 KMIDQVFGVLESPELSR 17 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 KMIDQVFGVLES(0.998)PELS(0.002)R;KMIDQVFGVLES(0.999)PELS(0.001)R ; 65.753 0.0074509 101073000 167254 171490 138720 81992 195277 177622 210447 217690 141636 207649 TRUE FALSE FALSE 155530.3583 157900.5078 192436.0991 190881.5196 170783.5378 155708.8036 157790.9347 168126.7391 153913.1225 155652.3388 0.999216327 1.014443529 1.236319997 1.226332486 1.09721151 1.000362762 1.013739568 1.08014271 0.988826276 1 17.24796773 -6.138244027 5.058998511 1.021906813 1.124386772 0.298850317 0.075061841 0.333673396 12.40491368 0.027863258 0.027954639 7.27E-07 6.138244027 0.102479959 KMIETEELKS(ph)KQT(ph)R ddPTM_HeLa_A486_30min_R1 1 KMIETEELKSKQTR 14 3 Q5JVD3;Q7Z7A1-5;Q7Z7A1 Q5JVD3 CNTRL Centriolin 2 0 KMIET(0.465)EELKS(0.788)KQT(0.747)R 61.962 0.011037 604160000 1152300 962330 613740 45838 1250400 989630 862310 1109800 749700 391390 TRUE FALSE FALSE 1071529.72 886071.4661 851396.5645 106713.1805 1093563.172 867539.5124 646550.9174 857122.7668 814684.5996 293383.3965 3.652318888 3.020182726 2.901993006 0.363732855 3.727420112 2.957016392 2.203774737 2.921510818 2.776859936 1 18.1624277 -10.10955245 5.269488547 0.999965544 2.696178208 0.251850961 0.890678781 301932278.4 2.888366324 126230.2097 0.215875452 7.77E-11 10.10955245 1.696212664 KMLGEDS(ph)DEEEEMDTSER ddPTM_HeLa_A485_30min_R1 3 KMLGEDSDEEEEMDTSER 18 1 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 KMLGEDS(1)DEEEEMDTSER;KMLGEDS(1)DEEEEMDTSER;KMLGEDS(1)DEEEEMDTSER ;; 240.41 1.49E-45 5540250000 1523620 1364680 1018360 2261430 2086320 1646260 2767830 2844920 1338630 3033900 TRUE FALSE FALSE 1862544.013 1524267.455 1395093.741 2384966.195 1878598.655 1732455.628 2176460.509 2147198.909 1607280.762 2277604.565 0.817764436 0.669241482 0.612526759 1.047137959 0.824813352 0.760648119 0.955591916 0.942744383 0.705689121 1 21.11908586 -5.245481003 24.92661146 0.883069688 0.696783953 0.385036851 0.110340616 849.0320298 1326166.167 0.029565108 0.050998754 5.68E-06 5.245481003 -0.186285734 KMLGEDS(ph)DEEEEMDTSER ddPTM_HeLa_A486_30min_R1 4 KMLGEDSDEEEEMDTSER 18 1 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 KMLGEDS(1)DEEEEMDTSER;KMLGEDS(1)DEEEEMDTSER;KMLGEDS(1)DEEEEMDTSER;KMLGEDS(1)DEEEEMDTSER ;;; 258.47 5.26E-58 6615200000 2642190 2306640 1385060 1479380 2675750 2926630 4051850 3899240 1803360 4272930 TRUE FALSE FALSE 2456986.125 2123853.446 1921392.325 3444071.404 2340132.485 2565572.146 3038034.274 3011468.172 1959676.697 3202960.516 0.767098474 0.663090736 0.599880116 1.075277509 0.730615464 0.801000241 0.948508188 0.940213954 0.611832924 1 21.61097458 -5.230091768 24.99891344 0.864278507 0.675329862 0.313000095 0.132538465 841.0071995 670680.7614 0.034905325 0.060449997 5.89E-06 5.230091768 -0.188948645 KMPLDLS(ph)PLATPIIR ddPTM_HeLa_A485_30min_R1 2 KMPLDLSPLATPIIR 15 1 B8ZZU6;E9PBF9;P15336-4;P15336-5;P15336;C9JCI8;E9PEK8;H7C2N6;P15336-3;P15336-7 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 KMPLDLS(1)PLATPIIR;KMPLDLS(1)PLATPIIR ; 212.26 3.43E-26 1639830000 747830 1004580 829240 670280 1123240 974040 1145720 1348210 753770 816780 TRUE FALSE FALSE 914182.2035 1122056.892 1136010.384 706895.6992 1011406.282 1025039.228 900927.5623 1017559.384 905044.725 613171.7777 1.490907176 1.829922598 1.852678849 1.152851003 1.64946646 1.671699947 1.469290654 1.659501335 1.476005188 1 19.22593177 -11.69541623 0.290154677 3.44E-14 1.637145956 0.467245698 0.189807776 49.5240505 1.556178015 31.10704068 0.215041408 2.02E-12 11.69541623 1.637145956 KMPLDLS(ph)PLATPIIR ddPTM_HeLa_A486_30min_R1 2 KMPLDLSPLATPIIR 15 1 B8ZZU6;E9PBF9;P15336-4;P15336-5;P15336;C9JCI8;E9PEK8;H7C2N6;P15336-3;P15336-7 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 KMPLDLS(1)PLATPIIR;KMPLDLS(1)PLATPIIR ; 238.64 2.37E-41 1098470000 1954310 1798950 1394370 737460 2243290 1714310 2108930 2222200 1447980 2028280 TRUE FALSE FALSE 1817322.961 1656394.65 1934307.407 1716844.149 1961915.65 1502815.862 1581253.408 1716253.57 1573492.072 1520385.486 1.195304071 1.089457026 1.272248008 1.12921635 1.290406721 0.988443968 1.040034532 1.12882791 1.034929685 1 20.53600573 -6.271973523 24.99976239 1.04659817 1.190045442 0.585805406 0.06570372 559.3402557 1327429.888 0.022414438 0.019974733 5.35E-07 6.271973523 0.143447272 KMS(ph)DDEDDDEEEYGKEEHEK ddPTM_HeLa_A485_30min_R1 4 KMSDDEDDDEEEYGKEEHEK 20 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK ;;; 326.87 2.86E-114 5811000000 1859140 888637 534099 4540730 1299024 1391656 2627980 1785378 812991 5389030 TRUE FALSE FALSE 2272699.279 992555.367 731684.4458 4788778.582 1169688.609 1464520.956 2066490.604 1347511.246 976150.8365 4045643.999 0.561764525 0.245339275 0.180857348 1.183687587 0.28912297 0.361999463 0.510793981 0.333077069 0.241284413 1 21.94793794 -10.29217946 4.195704494 1.000604054 0.436136988 0.275525299 0.275219489 252893653.7 1455.010122 1476814.322 0.066601395 5.10E-11 10.29217946 -0.564467066 KMS(ph)DDEDDDEEEYGKEEHEK ddPTM_HeLa_A486_30min_R1 6 KMSDDEDDDEEEYGKEEHEK 20 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK;KMS(1)DDEDDDEEEYGKEEHEK ;;;;; 279.48 6.12E-73 7039020000 2681062 2048183 619267 2664215 1254444 3337460 4426090 3421875 1547485 8018860 TRUE FALSE FALSE 2493133.399 1885877.52 859063.7669 6202427.162 1097099.936 2925718.118 3318635.468 2642788.762 1681622.246 6010885.262 0.414769754 0.313743723 0.142918011 1.031865839 0.182518862 0.486736644 0.552104278 0.439667145 0.279762826 1 22.51914605 -11.07393052 2.58027775 1.881638378 0.43181811 0.344931749 0.236763616 19026859.09 6446786.766 98737011.21 0.058040375 8.43E-12 11.07393052 -1.449820268 KMS(ph)GGSTMSSGGGNTNNSNSK ddPTM_HeLa_A485_30min_R1 9 KMSGGSTMSSGGGNTNNSNSK 21 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 KMS(0.948)GGS(0.044)T(0.008)MSSGGGNTNNSNSK;KMS(0.993)GGS(0.006)TMSSGGGNTNNSNSK;KMS(0.954)GGS(0.039)T(0.007)MSSGGGNTNNSNSK;KMS(0.998)GGS(0.001)T(0.001)MSSGGGNTNNSNSK;KMS(0.957)GGS(0.02)T(0.02)MS(0.002)SGGGNTNNSNSK;KMS(0.307)GGS(0.307)T(0.307)MS(0.065)S(0.015)GGGNTNNSNSK;KMS(0.528)GGS(0.215)T(0.215)MS(0.039)S(0.002)GGGNTNNSNSK;KMS(0.723)GGS(0.214)T(0.064)MSSGGGNTNNSNSK;KMS(0.906)GGS(0.039)T(0.052)MS(0.002)SGGGNTNNSNSK ;;;;;;;; 304.96 7.43E-88 7033021000 2065967 1879584 1393109 2595861 2520923 2471453 3455446 3487030 2085177 3590780 TRUE FALSE FALSE 2525534.232 2099384.999 1908477.991 2737666.313 2269931.055 2600854.457 2717161.734 2631830.425 2503652.898 2695664.629 0.936887402 0.778800514 0.7079805 1.015581198 0.842067307 0.964828647 1.007974695 0.976319679 0.928770171 1 21.36220959 -5.270640194 24.99804178 0.95824231 0.804980574 0.500740838 0.070522342 533.1095701 1448424.76 0.020011956 0.030151451 5.36E-06 5.270640194 -0.153261736 KMS(ph)GGSTMSSGGGNTNNSNSK ddPTM_HeLa_A486_30min_R1 12 KMSGGSTMSSGGGNTNNSNSK 21 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 KMS(0.93)GGS(0.035)T(0.035)MSSGGGNTNNSNSK;KMS(0.92)GGS(0.057)T(0.023)MSSGGGNTNNSNSK;KMS(0.971)GGS(0.022)T(0.006)MSSGGGNTNNSNSK;KMS(0.866)GGS(0.067)T(0.067)MS(0.001)SGGGNTNNSNSK;KMS(0.985)GGS(0.005)T(0.01)MSSGGGNTNNSNSK;KMS(0.884)GGS(0.081)T(0.034)MS(0.001)SGGGNTNNSNSK;KMS(0.317)GGS(0.317)T(0.317)MS(0.024)S(0.024)GGGNTNNSNSK;KMS(0.749)GGS(0.115)T(0.115)MS(0.018)S(0.003)GGGNTNNSNSK;KMS(0.943)GGS(0.028)T(0.028)MS(0.002)SGGGNTNNSNSK;KMS(0.792)GGS(0.099)T(0.099)MS(0.009)SGGGNTNNSNSK;KMS(1)GGSTMSSGGGNTNNSNSK;KMS(0.902)GGS(0.07)T(0.025)MS(0.003)SGGGNTNNSNSK ;;;;;;;;;;; 301.15 1.68E-87 10024666000 4390571 4383272 2618331 1782449 4394369 4739512 5605651 5284375 3639217 5535911 TRUE FALSE FALSE 4082814.646 4035925.563 3632218.885 4149631.352 3843186.264 4154799.197 4203057.829 4081238.17 3954667.26 4149682.853 0.983885948 0.97258651 0.875300357 0.999987589 0.926139756 1.001232948 1.012862423 0.983506045 0.953004699 1 21.98456965 -6.274794529 24.86369541 0.990511677 0.951198607 0.229604725 0.035291844 1144.494241 2130734.966 0.012371232 0.010970276 5.31E-07 6.274794529 -0.03931307 KMS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 KMSPLR 6 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 KMS(1)PLR 60.019 0.024869 805910000 619500 651390 657450 818690 815870 761450 979980 1068600 695430 1062400 TRUE FALSE FALSE 757305.6378 727564.3942 900668.1138 863412.9617 734639.1181 801318.3446 770599.2673 806524.1745 834996.4221 797563.232 0.94952426 0.912234121 1.129274868 1.082563648 0.921104545 1.004708232 0.966192066 1.011235401 1.046934448 1 19.60523938 KMS(ph)PLR ddPTM_HeLa_A486_30min_R1 3 KMSPLR 6 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 KMS(1)PLR;KMS(1)PLR;KMS(1)PLR ;; 63.673 0.021405 1347450000 1667920 1715310 1114540 673790 1790300 1698190 1997810 1972560 1417460 2106280 TRUE FALSE FALSE 1551007.421 1579382.589 1546119.736 1568617.171 1565743.88 1488684.584 1497936.807 1523451.149 1540326.574 1578853.778 0.982362928 1.000334933 0.979267211 0.993516431 0.991696572 0.942889458 0.948749547 0.964909588 0.975597991 1 20.59044614 -6.231519496 24.43642293 0.963131179 0.989702939 0.343085266 0.015584575 526.2635861 429814.5597 0.005037059 0.005036081 5.87E-07 6.231519496 0.02657176 KMS(ph)QPGS(ph)PSPK ddPTM_HeLa_A485_30min_R1 4 KMSQPGSPSPK 11 1 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 KMS(1)QPGS(0.994)PS(0.006)PK;KMS(1)QPGS(0.994)PS(0.006)PK;KMS(1)QPGS(0.987)PS(0.013)PK;KMS(1)QPGS(0.97)PS(0.03)PK ;;; 74.428 0.0019148 1518590000 2568900 1849080 1159957 4815990 2322310 2330360 3727490 2912890 2012180 6238370 TRUE FALSE FALSE 3140342.942 2065313.821 1589073.364 5079075.339 2091092.662 2452374.046 2931081.311 2198499.16 2416006.069 4683259.168 0.670546478 0.440999259 0.339309294 1.084517247 0.446503725 0.523646879 0.625863572 0.46943786 0.515881352 1 22.15908145 -11.16367504 2.337275674 2.04470865 0.567070433 0.30695833 0.194488712 31095436.75 7031119.627 172065183.1 0.047764021 6.86E-12 11.16367504 -1.477638217 KMS(ph)QPGS(ph)PSPK ddPTM_HeLa_A486_30min_R1 2 KMSQPGSPSPK 11 1 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 KMS(0.827)QPGS(0.932)PS(0.241)PK;KMS(1)QPGS(0.956)PS(0.045)PK ; 84.759 0.00096081 238600000 890490 848390 342730 476320 590080 1036500 1293260 1086630 693100 1551120 TRUE FALSE FALSE 828071.2495 781160.4866 475444.2346 1108897.032 516066.6641 908627.1684 969672.6693 839228.07 753178.4661 1162709.456 0.712191034 0.671844959 0.408910612 0.953718082 0.443848342 0.781473965 0.833976764 0.72178657 0.64777874 1 20.1490592 -14 0.17025977 2.224191954 0.612668671 0.278280973 0.154413032 171.7613106 1.620001746 70.95077436 0.538133318 1.00E-14 14 -1.611523283 KMS(ph)VMGR ddPTM_HeLa_A486_30min_R1 2 KMSVMGR 7 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3;H0YCT3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 KMS(1)VMGR;KMS(1)VMGR ; 93.111 0.0038356 0 111651 119722 77754 46670 139655 131290 147385 152021 96753 150312 TRUE FALSE FALSE 103824.8415 110234.7927 107862.4311 108650.1186 122138.1677 115092.7747 110507.7141 117409.1369 105139.6279 112672.8968 0.921471307 0.978361219 0.95730592 0.964296842 1.084006634 1.021477018 0.980783465 1.042035309 0.933140364 1 16.781781 -5.553367301 24.99998433 1.012587638 0.955948206 0.323053533 0.039014774 234.1618564 192006.6971 0.011315707 0.014608698 2.80E-06 5.553367301 -0.056639432 KMSFDIIDK ddPTM_HeLa_A486_30min_R1 1 KMSFDIIDK 9 1 M0R3F6;M0R2Z9;Q8IX01-4;Q8IX01-3;Q8IX01 M0R3F6 SUGP2 SURP and G-patch domain-containing protein 2 0 0 47.261 0.032083 935810000 779420 739850 576030 293080 1016900 727010 883920 758850 640320 818260 FALSE FALSE TRUE 724786.6829 681221.5915 799084.2426 682305.0514 889350.9198 637318.8979 662753.8668 586076.4206 695823.4532 613362.37 1.181661475 1.110634797 1.302793066 1.112401224 1.449960029 1.039057707 1.080525802 0.955514145 1.134441053 1 19.22638013 -6.410544547 22.90767762 1.041482053 1.224365398 0.463701433 0.101795676 11.29097147 2284.086039 0.034236422 0.03019366 3.89E-07 6.410544547 0.182883345 KMTGT(ph)LET(ph)QFT(ph)CPFCNHEKSCDVK ddPTM_HeLa_A485_30min_R1 1 KMTGTLETQFTCPFCNHEKSCDVK 24 2 K7EN05;K7EPC8;A0A024R7E8;K7EQ44;K7EMV4;P60002 K7EN05 ELOF1 Transcription elongation factor 1 homolog 3 0 KMT(0.704)GT(0.745)LET(0.78)QFT(0.728)CPFCNHEKS(0.044)CDVK 49.101 0.015097 882780000 97331 140460 92747 45214 125410 79534 115520 83826 97397 77427 TRUE FALSE FALSE 118981.9452 156885.5752 127057.9748 47683.92633 112923.7401 83698.27726 90838.20829 63267.54207 116943.6845 58125.87384 2.046970433 2.699066092 2.18591079 0.820356292 1.942744816 1.439948714 1.56278439 1.088457478 2.011904111 1 15.82689288 -5.076160647 7.509323702 1.444672932 2.390561364 0.532027267 0.388845649 0.19260069 16.84437133 0.098032853 0.17150734 8.39E-06 5.076160647 0.945888431 KMVT(ph)PK ddPTM_HeLa_A485_30min_R1 2 KMVTPK 6 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 KMVT(1)PK;KMVT(1)PK ; 74.173 0.022185 751230000 434160 283837 155715 665540 268386 378362 512020 676010 301080 828690 TRUE FALSE FALSE 530737.3942 317029.2681 213320.4583 701896.765 241664.5475 398172.4493 402622.7442 510217.4876 361503.9943 622112.8339 0.853120793 0.509600913 0.342896733 1.128246721 0.388457743 0.640032527 0.647186044 0.820136573 0.58109072 1 19.24681674 -13.99999152 0.280033775 3.551204955 0.630807966 0.175987631 0.220834778 392.2887627 3.764479826 581.0812193 0.24634418 1.00E-14 13.99999152 -2.920396989 KMVT(ph)PK ddPTM_HeLa_A486_30min_R1 2 KMVTPK 6 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 KMVT(1)PK;KMVT(1)PK ; 72.643 0.023122 754250000 994850 498070 415050 575870 473660 1223640 988310 813700 695310 1532830 TRUE FALSE FALSE 925116.1524 458601.1193 575768.4754 1340654.463 414249.1461 1072679.738 741024.3847 628438.2729 755580.0306 1148999.391 0.805149384 0.399130864 0.501104248 1.166801718 0.360530344 0.93357729 0.644930181 0.546943957 0.657598286 1 20.1319466 -10.96077963 2.322861933 1.271746071 0.664715214 0.152731479 0.23414603 33486387.62 14186342.93 49028224.79 0.056185787 1.09E-11 10.96077963 -0.607030857 KNAFALLVEMGHAFLR ddPTM_HeLa_A485_30min_R1 2 KNAFALLVEMGHAFLR 16 1 Q5JTH9-2;Q5JTH9-3;Q5JTH9 Q5JTH9-2 RRP12 RRP12-like protein 0 0 ; ; 119.56 1.24E-05 7357500 21643.3 22220.9 18203.9 17814.5 18851.5 14310.1 23718.2 27285.6 9862.4 28521.5 FALSE FALSE TRUE 26457.77742 24819.44096 24938.28014 18787.66103 16974.57847 15059.35471 18650.61281 20593.76382 11841.69322 21411.61495 1.235674071 1.159157822 1.164708043 0.877451844 0.792774319 0.70332643 0.871051196 0.961803389 0.55304998 1 14.38610599 -5.296634732 2.992134794 0.809751212 1.194322938 0.66213698 0.119893572 0.152037938 2.734306504 0.0338761 0.057579064 5.05E-06 5.296634732 0.384571726 KNAFALLVEMGHAFLR ddPTM_HeLa_A486_30min_R1 2 KNAFALLVEMGHAFLR 16 1 Q5JTH9-2;Q5JTH9-3;Q5JTH9 Q5JTH9-2 RRP12 RRP12-like protein 0 0 ; ; 148.33 8.62E-09 5541400 29628.4 18880.1 12756.1 13045.4 20497.6 20136.7 25062.5 19318.1 14701.3 32226.7 FALSE FALSE TRUE 27551.60216 17383.97212 17695.60354 30370.35048 17926.59988 17652.43869 18791.59742 14919.79034 15975.62052 24156.92456 1.140526067 0.719626874 0.732527168 1.257210967 0.742089492 0.730740316 0.777896928 0.617619611 0.661326755 1 14.56014918 -5.942385103 24.9999373 0.735055241 0.937570766 0.233141088 0.180049966 122.9674914 53356.45553 0.055420711 0.062841174 1.14E-06 5.942385103 0.202515525 KNDMDEPPPLDYGS(ph)GEDDGK ddPTM_HeLa_A486_30min_R1 2 KNDMDEPPPLDYGSGEDDGK 20 1 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;H7C2H0 Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KNDMDEPPPLDYGS(1)GEDDGK;KNDMDEPPPLDYGS(1)GEDDGK ; 194.19 6.87E-20 586300000 759770 745840 292440 469400 559880 995060 1182750 1021490 622490 1445300 TRUE FALSE FALSE 706514.0465 686736.9221 405680.5998 1092786.922 489654.6297 872299.6142 886813.4401 788919.026 676447.9344 1083387.473 0.652134222 0.633879327 0.374455686 1.008675981 0.451966302 0.805159406 0.818556115 0.728196556 0.624382275 1 20.04711788 -14 0.112292058 2.000836482 0.507325685 0.259346228 0.169983942 225.7868903 1.673497511 52.14217209 1.944367234 1.00E-14 14 -1.493510797 KNDMDEPPPLDYGS(ph)GEDDGKSDK ddPTM_HeLa_A486_30min_R1 1 KNDMDEPPPLDYGSGEDDGKSDK 23 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;H7C2H0 Q12873-2;H7C2H0 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KNDMDEPPPLDYGS(1)GEDDGKSDK 161.8 1.44E-14 934520000 431000 342560 128210 317180 327680 539640 764090 631400 317390 956330 TRUE FALSE FALSE 400789.1257 315414.298 177856.3456 738411.0694 286579.3189 473064.7035 572906.6003 487644.0034 344901.6208 716858.7433 0.559090796 0.439995049 0.248105149 1.030064955 0.399770975 0.659913418 0.799190364 0.680251176 0.481129126 1 19.45132934 -14 0.07729471 2.254095163 0.189481951 0.274617361 0.207075225 361.0172225 1.981237747 79.45286478 8.000907262 1.00E-14 14 -2.064613213 KNDQVFDINAEVDES(ph)DCGDFPDGSLGDDFDANDEPDHTAVGDHEEFR ddPTM_HeLa_A486_30min_R1 2 KNDQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFR 47 1 E9PHA2;Q15003;C9J470;Q15003-2 E9PHA2 NCAPH Condensin complex subunit 2 1 0 KNDQVFDINAEVDES(0.928)DCGDFPDGS(0.036)LGDDFDANDEPDHT(0.036)AVGDHEEFR;KNDQVFDINAEVDES(1)DCGDFPDGSLGDDFDANDEPDHTAVGDHEEFR ; 135.71 2.10E-11 77138000 24399.1 44535.9 24852.5 21634.2 40123.8 41080.7 42054.5 46839.7 28757.9 35079.6 TRUE FALSE FALSE 22688.84909 41006.71309 34476.05357 50365.51093 35091.09886 36012.58091 31532.01929 36175.32281 31250.65793 26295.43983 0.86284349 1.559461007 1.311103895 1.915370546 1.334493703 1.369537119 1.199144015 1.375726097 1.188444009 1 14.68252501 -6.6218971 2.121555538 1.215736731 1.428178842 0.117994927 0.258950057 0.735811441 6.742290151 0.118888958 0.085264797 2.39E-07 6.6218971 0.212442111 KNGFVVLK ddPTM_HeLa_A486_30min_R1 1 KNGFVVLK 8 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 63.565 0.020226 0 17144 15386 13896 6516.3 19370 18339 19478 18627 14951 22877 FALSE FALSE TRUE 15942.29413 14166.75733 19276.90335 15170.27572 16940.43398 16076.52064 14604.39838 14386.03872 16246.96472 17148.4503 0.929663839 0.82612464 1.124119265 0.88464412 0.987869673 0.937491165 0.851645375 0.838911883 0.947430493 1 14.06579059 -6.544599449 22.68090731 0.895857891 0.950875679 0.040994118 0.08395486 217.1929459 226788.6919 0.031275877 0.024229945 2.85E-07 6.544599449 0.055017787 KNGSTAVAESVAS(ph)PQK ddPTM_HeLa_A485_30min_R1 4 KNGSTAVAESVASPQK 16 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK ;;; 175.85 6.83E-13 12986500000 5300630 4575780 3113770 7010120 5999600 6008400 8955740 8560500 4411460 9286140 TRUE FALSE FALSE 6479736.857 5110877.667 4265683.098 7393065.105 5402258.758 6322990.533 7042272.987 6461023.953 5296799.558 6971276.197 0.929490767 0.733133722 0.611894146 1.06050383 0.774931104 0.907006171 1.010184188 0.92680648 0.759803429 1 22.73299136 -5.260846366 24.99994976 0.914026395 0.755668971 0.291537369 0.115252479 70.11800187 2955934.638 0.03162977 0.050834609 5.48E-06 5.260846366 -0.158357424 KNGSTAVAESVAS(ph)PQK ddPTM_HeLa_A486_30min_R1 3 KNGSTAVAESVASPQK 16 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KNGSTAVAESVAS(1)PQK;KNGSTAVAES(0.008)VAS(0.992)PQK;KNGSTAVAES(0.001)VAS(0.999)PQK ;; 181.51 6.93E-18 8636900000 5607160 4544180 2346420 2234130 3999150 5283130 6929390 6317780 3717730 8162770 TRUE FALSE FALSE 5214127.039 4184082.627 3255016.663 5201167.547 3497539.316 4631351.136 5195583.33 4879359.41 4039985.83 6118759.261 0.852154304 0.683812265 0.531973318 0.85003631 0.571609238 0.756910174 0.849123672 0.797442619 0.660262262 1 22.54480771 -6.519197357 24.1586548 0.808854468 0.693154881 0.190133831 0.122923074 184.5048762 1210817.073 0.044623419 0.035381938 3.03E-07 6.519197357 -0.115699587 KNIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_HeLa_A485_30min_R1 3 KNIIEATHMYDNAAEACSTTEEVFNSPR 28 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 KNIIEATHMYDNAAEACSTTEEVFNS(1)PR;KNIIEATHMYDNAAEACSTTEEVFNS(1)PR;KNIIEATHMYDNAAEACSTTEEVFNS(1)PR ;; 233.11 9.86E-40 1080870000 281975 323687 325656 327185 444668 347528 425827 453884 352048 461444 TRUE FALSE FALSE 344699.3659 361539.3789 446129.7061 345058.2881 400395.2926 365724.0287 334845.5828 342568.2373 422700.8044 346414.503 0.995048888 1.043661209 1.287849389 0.996084994 1.155827164 1.055741101 0.966603822 0.988896926 1.220216823 1 18.40213981 -6.506571481 24.26457272 1.038456758 1.098728945 0.054223074 0.102703069 1473.435318 2192422.34 0.036714697 0.031465981 3.11E-07 6.506571481 0.060272187 KNIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KNIIEATHMYDNAAEACSTTEEVFNSPR 28 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 KNIIEATHMYDNAAEACSTTEEVFNS(1)PR 178.85 2.96E-20 576140000 162680 165700 159990 73968 232120 166250 223640 214200 145240 189550 TRUE FALSE FALSE 151276.9721 152569.3285 221942.4127 172201.2421 203005.3452 145739.7653 167682.9066 165431.336 157829.5201 142085.4462 1.064690129 1.073785758 1.562034808 1.211955529 1.428755376 1.025719165 1.1801554 1.164308804 1.110807083 1 17.11639926 -6.278471132 24.96378556 1.111714728 1.270635619 0.246990404 0.148945843 1356.544328 1988307.873 0.053867427 0.047622886 5.27E-07 6.278471132 0.158920891 KNIVSLLLSMLGHDEDNTR ddPTM_HeLa_A485_30min_R1 2 KNIVSLLLSMLGHDEDNTR 19 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 162.33 1.00E-14 20351700 35005 38003 41459 23622.1 39563 34190 41439 46221 46768 47476 FALSE FALSE TRUE 42791.74148 42447.12027 56796.40935 24912.51551 35623.96881 35980.13553 32585.21912 34885.22728 56153.90862 35641.10693 1.200628857 1.190959651 1.593564685 0.698982654 0.999519147 1.009512292 0.914259459 0.978791914 1.575537727 1 15.12125452 -5.256715092 24.99989801 1.017995519 1.314641897 0.265348902 0.230597505 572.3367516 3028669.639 0.063266457 0.10520125 5.54E-06 5.256715092 0.296646378 KNIVSLLLSMLGHDEDNTR ddPTM_HeLa_A486_30min_R1 2 KNIVSLLLSMLGHDEDNTR 19 1 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 160.13 1.04E-14 4987700 15161.1 12247 8389.8 4427.6 13147.6 9665.6 14190.3 12079.5 9504.2 13456.6 FALSE FALSE TRUE 14098.38518 11276.50312 11638.55525 10307.67656 11498.50541 8473.156545 10639.73685 9329.261544 10328.03171 10086.97977 1.397681516 1.117926612 1.153819628 1.021879372 1.139935409 0.840009273 1.054799067 0.924881556 1.023897335 1 13.30020665 -1 0.504799842 0.97723758 14.20333679 0.706278562 0.07760694 56.41343796 0.592859019 0.039731962 792.9343645 0.1 1 13.22609921 KNKAS(ph)PAVALPK ddPTM_HeLa_A486_30min_R1 1 KNKASPAVALPK 12 2 Q5FBB7-6;Q5FBB7;Q5FBB7-5;Q5FBB7-4;Q5FBB7-3;Q5FBB7-2 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 KNKAS(1)PAVALPK 100.45 0.00046061 392300000 502970 394660 146130 226350 366300 487890 589290 531730 320860 661260 TRUE FALSE FALSE 467714.4003 363385.7043 202715.4495 526954.2391 320355.2384 427699.0923 441843.4091 410666.6866 348672.4031 495676.1919 0.943588593 0.733111072 0.408967493 1.063101774 0.646299426 0.862859866 0.891395262 0.828497905 0.70342778 1 18.91903844 -5.27979401 24.95299806 0.842324911 0.699011171 0.15987244 0.167167385 1581.228176 2149665.629 0.046298248 0.068814156 5.25E-06 5.27979401 -0.14331374 KNKS(ph)PPADPPR ddPTM_HeLa_A485_30min_R1 1 KNKSPPADPPR 11 2 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 KNKS(1)PPADPPR 70.332 0.0059751 509920000 838120 693350 416450 1032200 985930 937050 1314500 1432800 687540 1442500 TRUE FALSE FALSE 1024556.903 774431.2512 570512.1849 1088586.472 887767.3474 986112.489 1033646.337 1081403.553 825522.9715 1082911.297 0.946113412 0.715138214 0.526831871 1.005240665 0.819796921 0.910612431 0.954506929 0.998607694 0.762318182 1 20.04648364 -5.285503415 24.99168186 0.918198851 0.727938802 0.349437056 0.120124476 837.8957918 870193.9522 0.033624358 0.049900026 5.18E-06 5.285503415 -0.190260049 KNKS(ph)PPADPPR ddPTM_HeLa_A486_30min_R1 1 KNKSPPADPPR 11 2 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 KNKS(1)PPADPPR 96.734 0.0008274 424450000 823480 725990 349290 394610 725390 919650 1089900 1069100 578680 1194200 TRUE FALSE FALSE 765758.3045 668459.9084 484544.4423 918672.0225 634404.8222 806192.9333 817195.4922 825689.2683 628840.4483 895164.5471 0.855438597 0.746745289 0.541290921 1.026260508 0.708701908 0.900608649 0.912899751 0.922388259 0.702485873 1 19.77179337 -5.266763675 24.99975616 0.873526386 0.717716973 0.278201057 0.123025411 598.092119 2808288.844 0.033449668 0.051306866 5.41E-06 5.266763675 -0.155809412 KNLS(ph)PGAVESDVR ddPTM_HeLa_A485_30min_R1 2 KNLSPGAVESDVR 13 1 A0A3B3IU78;A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2 A0A3B3IU78 COPA Coatomer subunit alpha;Xenin;Proxenin 1 0 KNLS(1)PGAVESDVR;KNLS(1)PGAVESDVR ; 130.39 1.23E-05 966180000 755290 928510 699480 788510 1128180 1034370 1331700 1652220 782810 1024900 TRUE FALSE FALSE 923301.6548 1037091.168 958246.7598 831584.3047 1015854.438 1088528.014 1047171.416 1247010.454 939912.7866 769411.2919 1.200010533 1.347902193 1.245428511 1.080805953 1.320300922 1.414754404 1.361003441 1.620733238 1.221599938 1 19.55339548 -5.986963431 24.80587314 1.365059188 1.226054924 0.063085461 0.160842071 414.9780172 789611.1807 0.047996746 0.05439165 1.03E-06 5.986963431 -0.139004265 KNLS(ph)PGAVESDVR ddPTM_HeLa_A486_30min_R1 2 KNLSPGAVESDVR 13 1 A0A3B3IU78;A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2 A0A3B3IU78 COPA Coatomer subunit alpha;Xenin;Proxenin 1 0 KNLS(1)PGAVESDVR;KNLS(1)PGAVESDVR ; 122.22 2.98E-05 519420000 1063620 1085150 687300 350200 1163690 934140 1187460 1194150 790310 1167290 TRUE FALSE FALSE 989065.7305 999158.762 953440.9665 815283.2981 1017729.149 818895.3044 890344.9483 922268.1131 858814.7071 874992.9862 1.130369896 1.141904881 1.089655553 0.931759809 1.163128351 0.93588785 1.01754524 1.05402915 0.98151039 1 19.73891193 -5.025074033 9.418801848 1.017019629 1.131205548 0.404848045 0.061835012 0.352632314 129.3554791 0.015809247 0.028451747 9.44E-06 5.025074033 0.11418592 KNNPS(ph)PPPDSDLER ddPTM_HeLa_A485_30min_R1 4 KNNPSPPPDSDLER 14 1 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 KNNPS(1)PPPDSDLER;KNNPS(1)PPPDSDLER;KNNPS(1)PPPDSDLER;KNNPS(1)PPPDSDLER ;;; 153.36 2.28E-08 2400130000 1355900 1296460 1285550 1827590 2188120 1430110 1990850 1708370 1657260 2417820 TRUE FALSE FALSE 1657515.277 1448069.719 1761128.441 1927426.614 1970263.09 1504988.348 1565488.634 1289389.579 1989856.881 1815101.971 0.913180253 0.797789735 0.970264189 1.061883379 1.085483417 0.829148099 0.862479717 0.710367571 1.096278288 1 20.79161917 -9.016778585 14.90450567 0.999999998 0.92053059 0.030930897 0.123109396 0 0 0.123901882 0.03005062 9.62E-10 9.016778585 -0.079469409 KNNPS(ph)PPPDSDLER ddPTM_HeLa_A486_30min_R1 3 KNNPSPPPDSDLER 14 1 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 KNNPS(1)PPPDSDLER;KNNPS(1)PPPDSDLER;KNNPS(1)PPPDSDLER ;; 153.36 2.28E-08 2287040000 1546250 1715170 1183200 678710 1883850 1725370 2101420 1985160 1279340 1769420 TRUE FALSE FALSE 1437865.86 1579253.683 1641366.727 1580071.18 1647559.967 1512511.392 1575622.489 1533182.404 1390234.221 1326345.715 1.084080752 1.190680276 1.237510484 1.19129663 1.242179884 1.140359843 1.187942534 1.155944778 1.048168819 1 20.33902544 -7.805052885 2.289642115 0.999616117 1.18577177 0.685115432 0.04282784 0.159100785 1.62101447 0.040732051 0.011538397 1.57E-08 7.805052885 0.186155652 KNPSVVIKPEACS(ph)PQFGK ddPTM_HeLa_A486_30min_R1 1 KNPSVVIKPEACSPQFGK 18 2 A0A0U1RRM7;A0A0U1RQW3;A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-3;Q8WXE1-2;Q8WXE1 A0A0U1RRM7 ATRIP ATR-interacting protein 1 0 KNPSVVIKPEACS(1)PQFGK 103.9 7.73E-05 236350000 549960 569920 232550 283000 457440 602630 748460 698820 426990 752580 TRUE FALSE FALSE 511410.644 524757.4636 322599.5879 658838.302 400063.6097 528283.6377 561187.3916 539713.9411 464001.837 564129.0695 0.906549 0.93020816 0.571854218 1.167885751 0.70917035 0.936458811 0.994785452 0.95672067 0.822510064 1 19.10566576 -6.481295949 24.98421748 0.943572583 0.858628985 0.073370462 0.151087101 1443.181198 867108.3885 0.051077953 0.045042113 3.30E-07 6.481295949 -0.084943598 KNPTRWS(ph)TTAGFLK ddPTM_HeLa_A485_30min_R1 2 KNPTRWSTTAGFLK 14 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 KNPT(0.123)RWS(0.75)T(0.123)T(0.004)AGFLK;KNPT(0.151)RWS(0.731)T(0.114)T(0.003)AGFLK ; 141.22 2.11E-07 686500000 1288490 1258170 863850 960080 1554580 1524470 2053290 2387890 1052960 1374200 TRUE FALSE FALSE 1575110.155 1405302.037 1183424.063 1012526.739 1399800.557 1604288.892 1614587.818 1802256.233 1264279.414 1031637.23 1.526806235 1.362205624 1.147131984 0.981475571 1.356872858 1.555090147 1.565073235 1.746986422 1.225507743 1 19.97650431 -6.00036061 24.9999795 1.47233309 1.243784017 0.076071245 0.233918321 24.10783973 1671545.938 0.073173125 0.082058899 9.99E-07 6.00036061 -0.228549073 KNPTRWS(ph)TTAGFLK ddPTM_HeLa_A486_30min_R1 1 KNPTRWSTTAGFLK 14 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 KNPTRWS(0.781)T(0.217)T(0.002)AGFLK 164.01 4.81E-12 400370000 452820 421140 302780 235440 523500 426210 571690 624090 359660 538010 TRUE FALSE FALSE 421079.6564 387767.3326 420024.5247 548116.2185 457837.7486 373628.5436 428647.1153 481998.3308 390835.6184 403288.7941 1.044114447 0.961512788 1.041498129 1.359115915 1.135260278 0.926454067 1.062878814 1.195169164 0.969120948 1 18.62145379 -9.382588258 14.12934376 1.000012623 1.081390082 0.0341881 0.121360173 0 0 0.1235814 0.029972892 4.14E-10 9.382588258 0.081377459 KNPVISQTGS(ph)WR ddPTM_HeLa_A486_30min_R1 1 KNPVISQTGSWR 12 1 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5;E9PLU3 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 KNPVISQT(0.022)GS(0.978)WR 88.19 0.0013969 209540000 340950 373270 252990 126780 340880 295510 328300 318310 322740 395990 TRUE FALSE FALSE 317051.1657 343690.7258 350954.5033 295150.2471 298123.6518 259052.9807 246155.8676 245837.7617 350715.3631 296831.5265 1.068118233 1.15786463 1.182335675 0.994335914 1.004353059 0.872727314 0.829278044 0.828206372 1.181530032 1 18.1792848 -5.533216043 2.156262878 0.930530405 1.137675319 0.375841948 0.102783462 0.306979866 2.866331279 0.03331016 0.050737373 2.93E-06 5.533216043 0.207144914 KNQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_HeLa_A485_30min_R1 1 KNQKPSQVNGAPGSPTEPAGQK 22 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KNQKPSQVNGAPGS(0.974)PT(0.026)EPAGQK 98.565 0.00034886 4161500000 2096900 1505000 896150 2330200 1961900 2207500 3053900 3129600 1586300 3490300 TRUE FALSE FALSE 2563348.171 1680996.658 1227673.177 2457492.926 1766566.347 2323081.287 2401409.317 2362060.693 1904655.86 2620232.444 0.978290371 0.641544861 0.46853598 0.93789119 0.67420215 0.886593589 0.916487132 0.901469905 0.726903395 1 21.32126337 -6.27448393 23.69405982 0.882019967 0.730520318 0.191218294 0.149560853 672.3736572 1221290.975 0.052592311 0.046702219 5.32E-07 6.27448393 -0.15149965 KNQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_HeLa_A486_30min_R1 4 KNQKPSQVNGAPGSPTEPAGQK 22 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KNQKPSQVNGAPGS(1)PTEPAGQK;KNQKPSQVNGAPGS(0.989)PT(0.011)EPAGQK;KNQKPSQVNGAPGS(0.999)PT(0.001)EPAGQK;KNQKPSQVNGAPGS(1)PTEPAGQK ;;; 256.85 1.68E-59 8381360000 3973650 3574250 1649940 1605370 3233840 4056340 4809260 4778050 2887150 5605930 TRUE FALSE FALSE 3695117.655 3291013.413 2288840.955 3737382.491 2828221.633 3555910.013 3605932.281 3690192.319 3137410.487 4202168.64 0.879335879 0.783170238 0.54468089 0.889393742 0.673038584 0.846208308 0.858112225 0.878163785 0.746616987 1 22.00270263 -6.412470091 7.822849725 0.859380662 0.751587588 0.209079784 0.108693094 0.491057777 31.27163006 0.037496744 0.032994408 3.87E-07 6.412470091 -0.107793073 KNQS(ph)SEDILR ddPTM_HeLa_A485_30min_R1 1 KNQSSEDILR 10 1 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 KNQS(0.751)S(0.249)EDILR 137.75 1.83E-05 1224000000 1795900 1942900 1561900 1982000 2476100 1983000 2708500 2790600 1597900 2166300 TRUE FALSE FALSE 2195391.759 2170105.254 2139711.806 2090271.641 2229570.79 2086826.814 2129806.849 2106200.975 1918583.873 1626281.278 1.34994591 1.334397243 1.315708319 1.285307572 1.370962588 1.283189349 1.309617763 1.295102516 1.179736802 1 20.63314537 -8.07541871 1.493097135 0.999632422 1.322371645 0.940160043 0.025235115 0.104006092 0.507843174 0.023638841 0.006962908 8.41E-09 8.07541871 0.322739224 KNQS(ph)SEDILR ddPTM_HeLa_A486_30min_R1 2 KNQSSEDILR 10 1 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 KNQS(0.754)S(0.246)EDILR;KNQS(0.775)S(0.225)EDILR ; 201.08 5.28E-14 1344540000 2834500 2594500 1598880 1142920 2933400 2993200 3534000 3767300 2408300 3820500 TRUE FALSE FALSE 2635816.187 2388902.371 2218009.155 2660775.52 2565465.619 2623929.417 2649755.821 2909568.03 2617053.383 2863821.933 0.920384105 0.83416582 0.774492691 0.929099498 0.895818832 0.916233438 0.925251599 1.015973792 0.913832439 1 21.44951036 -6.344195282 0.779638087 0.977529652 0.848363601 0.488072588 0.047643113 0.554701294 0.725561333 0.034128263 0.030318836 4.53E-07 6.344195282 -0.129166051 KNQSS(ph)EDILR ddPTM_HeLa_A485_30min_R1 2 KNQSSEDILR 10 1 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 KNQS(0.306)S(0.694)EDILR;KNQS(0.411)S(0.589)EDILR ; 137.93 1.75E-05 1875230000 2907500 3062800 2423790 2971300 3959500 3481800 4316000 4906400 2586700 3930200 TRUE FALSE FALSE 3554263.344 3420967.817 3320450.783 3133614.595 3565278.277 3664101.664 3393851.342 3703097.707 3105826.963 2950473.47 1.204641689 1.159464016 1.125395913 1.062071775 1.208374965 1.241869043 1.150273465 1.255085919 1.05265375 1 21.49251506 -7.941003589 6.276639898 1.000439597 1.171950051 0.559408482 0.053973019 0.134039387 9.712783415 0.054747447 0.014202115 1.15E-08 7.941003589 0.171510454 KNQSS(ph)EDILR ddPTM_HeLa_A486_30min_R1 2 KNQSSEDILR 10 1 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 KNQS(0.362)S(0.638)EDILR;KNQS(0.286)S(0.714)EDILR ; 136.92 2.15E-05 2138610000 2136260 2000230 1285090 857990 2291210 2422630 2816630 2903530 1908110 2881050 TRUE FALSE FALSE 1986519.206 1841724.49 1782711.264 1997444.08 2003825.077 2123750.542 2111879.383 2242459.603 2073506.511 2159616.328 0.919848207 0.852801707 0.825475915 0.924906917 0.927861607 0.98339252 0.977895636 1.038360182 0.960127262 1 21.0423436 -5.932749989 1.361090734 0.997276611 0.866627076 0.747643024 0.031165222 0.20026139 0.771425424 0.012800488 0.015319052 1.17E-06 5.932749989 -0.130649536 KNQTALDALHAQTVSQTAASS(ph)PQDAYR ddPTM_HeLa_A486_30min_R1 1 KNQTALDALHAQTVSQTAASSPQDAYR 27 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 KNQTALDALHAQTVSQT(0.001)AAS(0.131)S(0.868)PQDAYR 109.68 0.00033531 207280000 365840 391800 292440 113240 437460 356260 415420 429630 300410 384000 TRUE FALSE FALSE 340196.5052 360752.3411 405680.5998 263628.4428 382589.6876 312308.2634 311477.5221 331812.6278 326449.7807 287843.9006 1.181878457 1.253291594 1.409377093 0.915872952 1.329156834 1.084991771 1.082105688 1.152751985 1.13412089 1 18.13492712 -1.00000081 0.0689349 0.817617794 1.950589238 0.215655389 0.124392822 393.6560495 2.010977758 5.866188076 43.41595185 0.099999814 1.00000081 1.132971444 KNRS(ph)SDGGSEEPPDRR ddPTM_HeLa_A485_30min_R1 1 KNRSSDGGSEEPPDRR 16 3 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4 Q9HCD6 TANC2 Protein TANC2 1 0 KNRS(0.443)S(0.443)DGGS(0.115)EEPPDRR 86.453 0.0072451 22617000 7927.9 20036 11959 6315 20645 23111 29782 42082 8715 13319 TRUE FALSE FALSE 9691.434004 22379.03591 16383.13176 6659.97246 18589.51131 24321.05622 23418.8324 31761.32352 10464.02056 9998.818418 0.969257926 2.238168049 1.638506779 0.666075948 1.859170807 2.43239303 2.342159986 3.176507682 1.046525712 1 13.2875419 -5.993705516 24.91821524 2.155721771 1.43362168 0.124394828 0.722035435 271.0639865 1073060.256 0.21896346 0.247637534 1.01E-06 5.993705516 -0.722100091 KNS(ph)ITEIS(ph)DNEDDLLEYHRR ddPTM_HeLa_A485_30min_R1 2 KNSITEISDNEDDLLEYHRR 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 KNS(0.998)IT(0.011)EIS(0.991)DNEDDLLEYHRR;KNS(1)ITEIS(1)DNEDDLLEYHRR ; 153.82 5.68E-10 1224620000 433780 400040 309425 564300 506190 447580 703950 592740 348850 798770 TRUE FALSE FALSE 530272.8645 446821.1981 423894.1837 595126.2801 455791.9463 471014.5967 553545.3318 447369.5856 418860.9952 599651.3393 0.884301976 0.745134996 0.706901087 0.99245385 0.760094936 0.785480772 0.923111974 0.746049506 0.698507562 1 19.19376438 -10.62735729 2.940702524 1.015574899 0.805451091 0.285782161 0.092630003 100408426.6 98864089.97 11929251.99 0.023727887 2.36E-11 10.62735729 -0.210123808 KNS(ph)ITEIS(ph)DNEDDLLEYHRR ddPTM_HeLa_A486_30min_R1 2 KNSITEISDNEDDLLEYHRR 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 KNS(1)ITEIS(1)DNEDDLLEYHRR;KNS(1)IT(0.085)EIS(0.915)DNEDDLLEYHRR ; 151.31 8.02E-10 1768780000 449200 489700 258998 293080 504970 503820 723130 616500 370690 772580 TRUE FALSE FALSE 417713.3997 450894.3885 359288.9618 682305.0514 441631.9539 441663.8109 542195.2255 476136.4081 402821.7077 579120.9393 0.721288718 0.778584157 0.620404025 1.178173685 0.762590202 0.762645211 0.936238338 0.822170942 0.695574413 1 19.14350514 -13.6054917 0.020985656 1.998921604 2.03E-06 0.104446251 0.148718336 7612.847504 12.83942659 820.8557023 452.3053571 2.48E-14 13.6054917 -1.998919575 KNS(ph)ITEISDNEDDLLEYHR ddPTM_HeLa_A486_30min_R1 2 KNSITEISDNEDDLLEYHR 19 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KNS(0.988)IT(0.012)EISDNEDDLLEYHR;KNS(0.998)IT(0.002)EISDNEDDLLEYHR ; 201.15 1.35E-25 260910000 147906 189518 111977 81198 182128 212595 245510 204859 159231 240513 TRUE FALSE FALSE 137538.5532 174499.9035 155337.4932 189033.0475 159283.808 186367.1904 184080.8013 158217.0777 173033.2713 180286.9793 0.76288678 0.967900755 0.86161238 1.048511924 0.883501452 1.033725181 1.021043239 0.877584606 0.959765769 1 17.45993568 -3.53646827 1.2856211 0.964777317 7.78E-11 0.453412138 0.064651271 7.153452491 2.637862931 0.018051675 14.31275671 0.000290758 3.53646827 -0.964777317 KNS(ph)ITEISDNEDDLLEYHRR ddPTM_HeLa_A485_30min_R1 1 KNSITEISDNEDDLLEYHRR 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KNS(0.996)IT(0.004)EISDNEDDLLEYHRR 101.45 6.12E-05 219950000 56501 53361 36079 62967 71229 61618 92729 82161 51000 108180 TRUE FALSE FALSE 69069.45252 59601.10477 49426.12347 66406.72777 64137.19066 64844.2232 72916.69162 62010.88593 61235.2322 81212.71691 0.850475826 0.733888817 0.608600788 0.817688784 0.789743197 0.798449131 0.897848199 0.763561278 0.754010388 1 16.30941803 -5.469042245 24.97079474 0.821733263 0.728256157 0.212172303 0.087404335 513.172547 238022.2925 0.024146473 0.03581472 3.40E-06 5.469042245 -0.093477106 KNS(ph)LISSLEEEVSILNR ddPTM_HeLa_A485_30min_R1 2 KNSLISSLEEEVSILNR 17 1 A0A087WY61;Q14980-2;Q14980;H0YFY6;Q14980-4;Q14980-3 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KNS(1)LISSLEEEVSILNR;KNS(0.922)LIS(0.059)S(0.018)LEEEVSILNR ; 166.34 3.43E-12 232227000 57047 57238 45915 72660 70139 61926 95186 93984 54658 109432 TRUE FALSE FALSE 69736.90834 63931.4862 62900.86918 76629.23182 63155.71489 65168.3496 74848.7335 70934.27664 65627.35925 82152.61635 0.848870206 0.778203897 0.765658746 0.932766785 0.768760847 0.793259576 0.911093728 0.863445132 0.798846856 1 16.3260189 -14 0.217459631 1.852671556 0.807145485 0.45589778 0.056087287 138.8773918 1.388933931 51.79417016 0.111533308 1.00E-14 14 -1.045526071 KNS(ph)LISSLEEEVSILNR ddPTM_HeLa_A486_30min_R1 4 KNSLISSLEEEVSILNR 17 1 A0A087WY61;Q14980-2;Q14980;H0YFY6;Q14980-4;Q14980-3 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KNS(1)LISSLEEEVSILNR;KNS(0.96)LIS(0.038)S(0.001)LEEEVSILNR;KNS(0.999)LIS(0.001)S(0.001)LEEEVSILNR;KNS(1)LISSLEEEVSILNR ;;; 222.48 1.98E-34 409007000 204845 198072 109706 106761 189300 208168 265905 253101 176867 267721 TRUE FALSE FALSE 190486.4233 182376.0534 152187.1012 248545.0034 165556.2288 182486.3487 199372.7565 195475.4275 192197.974 200681.919 0.949195743 0.908781689 0.75834984 1.238502226 0.824968336 0.909331292 0.99347643 0.974056001 0.957724417 1 17.61455111 -1.000037016 0.125600005 1.012913174 0.671076432 0.034847193 0.117873287 366.2596187 3.141537789 0.701714893 22.05068133 0.099991477 1.000037016 -0.341836742 KNS(ph)LRVEGDNIYVR ddPTM_HeLa_A485_30min_R1 4 KNSLRVEGDNIYVR 14 2 O43491;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 KNS(1)LRVEGDNIYVR;KNS(1)LRVEGDNIYVR;KNS(1)LRVEGDNIYVR;KNS(1)LRVEGDNIYVR ;;; 212.78 6.74E-23 2937650000 942620 749250 736790 1138740 1574020 1105290 1933160 2098080 1408100 2461400 TRUE FALSE FALSE 1152302.567 836868.2699 1009359.281 1200946.483 1417305.042 1163161.275 1520124.574 1583522.59 1690692.754 1847818.279 0.623601671 0.45289533 0.546243802 0.649926725 0.767015382 0.629478174 0.822659128 0.856968788 0.914967004 1 20.81739145 -6.638397486 0.432875839 1.009659647 0.491896084 0.846905964 0.064464852 0.422982185 0.177262602 0.067902854 0.078562788 2.30E-07 6.638397486 -0.517763563 KNS(ph)LRVEGDNIYVR ddPTM_HeLa_A486_30min_R1 4 KNSLRVEGDNIYVR 14 2 O43491;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 KNS(1)LRVEGDNIYVR;KNS(1)LRVEGDNIYVR;KNS(1)LRVEGDNIYVR;KNS(1)LRVEGDNIYVR ;;; 226.23 2.71E-28 3786800000 922260 919680 552510 480663 1065280 1398200 1672590 2054060 822950 1283910 TRUE FALSE FALSE 857614.3366 846801.2074 766456.6687 1119007.755 931662.6491 1225704.3 1254090.291 1586395.378 894283.9686 962410.5791 0.891110671 0.879875207 0.796392606 1.162713482 0.96805113 1.273577334 1.303072013 1.64835613 0.929212529 1 19.87629298 -5.794250626 1.203867594 1.274110983 0.862996142 0.340312309 0.201366411 0.45845862 1.4040853 0.081940868 0.115406603 1.61E-06 5.794250626 -0.41111484 KNS(ph)PQEEVELKK ddPTM_HeLa_A485_30min_R1 1 KNSPQEEVELKK 12 2 C9JYK5;J3QTA2;Q99933-4;Q99933-3;Q99933-2;Q99933;A0A0U1RR89 C9JYK5 BAG1 BAG family molecular chaperone regulator 1 1 0 KNS(1)PQEEVELKK 54.7 0.018691 73289000 93759 48933 38264 164450 93491 75364 148540 140220 52097 231490 TRUE FALSE FALSE 114615.3661 54655.28869 52419.4459 173433.4871 84182.70777 79309.94251 116803.2155 105830.8251 62552.39004 173783.8033 0.659528471 0.314501626 0.301635969 0.997984184 0.48441055 0.456371313 0.672117961 0.608979797 0.359943728 1 17.4069341 -10.54133025 3.205248202 1.0155368 0.541247712 0.324939639 0.199109612 108341197.5 136651365.1 14662018.95 0.049217129 2.88E-11 10.54133025 -0.474289089 KNS(ph)SRDS(ph)GRGDSVSDSGSDALR ddPTM_HeLa_A485_30min_R1 2 KNSSRDSGRGDSVSDSGSDALR 22 3 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 2 0 KNS(0.956)S(0.045)RDS(0.97)GRGDS(0.013)VS(0.01)DS(0.003)GS(0.003)DALR;KNS(0.803)S(0.201)RDS(0.995)GRGDS(0.001)VSDSGSDALR ; 100.68 0.00033618 2844300000 888100 883150 614080 1249890 1269100 880950 1236530 1204200 709200 1420710 TRUE FALSE FALSE 1085654.781 986426.7101 841253.746 1318168.326 1142743.948 927075.1798 972335.264 908868.0619 851529.9348 1066553.143 1.017909692 0.924873473 0.788759333 1.235914342 1.071436482 0.869225491 0.911661336 0.852154501 0.798394286 1 20.02452442 -6.279654297 24.1133513 0.878632651 1.003679284 0.213963321 0.115834503 887.8546262 1175358.968 0.043092262 0.038082713 5.25E-07 6.279654297 0.125046633 KNS(ph)SRDS(ph)GRGDSVSDSGSDALR ddPTM_HeLa_A486_30min_R1 2 KNSSRDSGRGDSVSDSGSDALR 22 3 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 2 0 KNS(0.965)S(0.037)RDS(0.853)GRGDS(0.141)VS(0.003)DS(0.001)GSDALR;KNS(0.789)S(0.246)RDS(0.894)GRGDS(0.055)VS(0.011)DS(0.004)GS(0.002)DALR ; 137.36 3.92E-07 3147900000 897933 848714 448593 576624 875980 1022810 1225960 1073710 701011 1245800 TRUE FALSE FALSE 834992.5336 781458.8117 622300.2233 1342409.813 766106.4202 896626.1014 919211.8411 829249.6719 761775.1979 933843.5712 0.894146043 0.836819823 0.666385937 1.437510365 0.820379819 0.960145927 0.984331712 0.887996338 0.81574176 1 19.83282138 KNS(ph)STDQGS(ph)DEEGSLQK ddPTM_HeLa_A485_30min_R1 4 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 0 KNS(0.85)S(0.066)T(0.084)DQGS(1)DEEGSLQK;KNS(0.954)S(0.021)T(0.026)DQGS(1)DEEGSLQK;KNS(0.835)S(0.074)T(0.091)DQGS(1)DEEGSLQK;KNS(0.998)S(0.001)T(0.001)DQGS(1)DEEGSLQK ;;; 130.6 3.82E-08 1338930000 2853360 1449640 776821 5203940 1986500 1564160 3105450 2049200 1311200 5793290 TRUE FALSE FALSE 3488080.088 1619162.788 1064199.414 5488218.065 1788717.085 1646056.999 2441945.238 1546630.487 1574345.813 4349129.421 0.802018002 0.372295839 0.244692515 1.261911876 0.411281641 0.378479654 0.561479092 0.355618409 0.361991024 1 22.05229521 -10.41939998 4.826499095 1.0007496 0.524560682 0.197989456 0.285076355 0.002300711 0.000276762 0.276174843 0.0668815 3.81E-11 10.41939998 -0.476188918 KNS(ph)STDQGS(ph)DEEGSLQK ddPTM_HeLa_A486_30min_R1 4 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 0 KNS(0.987)S(0.009)T(0.004)DQGS(1)DEEGSLQK;KNS(0.964)S(0.013)T(0.023)DQGS(1)DEEGSLQK;KNS(0.882)S(0.11)T(0.008)DQGS(1)DEEGSLQK;KNS(0.624)S(0.136)T(0.24)DQGS(1)DEEGSLQK ;;; 227.59 8.32E-35 2226630000 2269590 2062000 579728 1267486 1339670 2616670 3319500 2759560 1622223 3985160 TRUE FALSE FALSE 2110503.461 1898599.61 804214.2073 2950771.463 1171636.097 2293851.86 2488925.99 2131268.429 1762838.596 2987249.997 0.706503796 0.6355677 0.269215569 0.98778859 0.392212268 0.767880781 0.833183025 0.713454994 0.59012088 1 21.51038655 -6.41419725 23.53188429 0.766340414 0.601323333 0.167688677 0.202121973 35.21429199 7592.129734 0.068435197 0.06035413 3.85E-07 6.41419725 -0.165017081 KNS(ph)TGSGHSAQELPTIR ddPTM_HeLa_A485_30min_R1 2 KNSTGSGHSAQELPTIR 17 1 I3L280;O94763-2;O94763-4;O94763-3;O94763 I3L280 URI1 Unconventional prefoldin RPB5 interactor 1 1 0 KNS(0.933)T(0.054)GS(0.013)GHSAQELPTIR;KNS(0.944)T(0.052)GS(0.004)GHSAQELPTIR ; 160.98 4.96E-12 998580000 515070 519230 375080 445770 699670 496070 656300 627700 421740 679880 TRUE FALSE FALSE 629645.5445 579949.4318 513837.7004 470121.2864 630008.3981 522043.4581 516076.1435 473755.5908 506379.3496 510398.4283 1.233635352 1.13626806 1.006738407 0.921086861 1.234346274 1.022815568 1.011124085 0.928207386 0.992125605 1 18.96126436 -4.556106342 2.964374312 1.016685427 1.226237643 0.434753332 0.081167026 0.264381739 4.424406362 0.022370067 0.094502602 2.78E-05 4.556106342 0.209552216 KNS(ph)TGSGHSAQELPTIR ddPTM_HeLa_A486_30min_R1 2 KNSTGSGHSAQELPTIR 17 1 I3L280;O94763-2;O94763-4;O94763-3;O94763 I3L280 URI1 Unconventional prefoldin RPB5 interactor 1 1 0 KNS(0.793)T(0.195)GS(0.012)GHSAQELPTIR;KNS(0.994)T(0.006)GSGHSAQELPTIR ; 205.53 1.93E-25 1017230000 568790 581600 337420 94108 561770 533760 662940 604890 465510 498900 TRUE FALSE FALSE 528920.7582 535511.8978 468078.0604 219088.18 491307.5683 467910.1181 497065.4001 467169.7517 505860.7816 373972.1927 1.414331783 1.431956462 1.251638677 0.58584083 1.313754279 1.2511896 1.329150696 1.249209863 1.352669507 1 18.51257147 -13.99954136 0.017319277 4.41E-07 2.118836797 0.050327808 0.233545267 22665.34733 29.68390227 2353.395759 1394.20426 1.00E-14 13.99954136 2.118836356 KNSGEPLPPKPGPGS(ph)PSHPGALDLDGVSR ddPTM_HeLa_A485_30min_R1 1 KNSGEPLPPKPGPGSPSHPGALDLDGVSR 29 2 A1X283;G3V144;A0A1B0GUF2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 KNSGEPLPPKPGPGS(0.874)PS(0.126)HPGALDLDGVSR 159.91 1.63E-12 229090000 149440 188620 145650 178640 230950 215410 274730 321160 159680 240120 TRUE FALSE FALSE 182682.4124 210677.4682 199531.996 188398.6509 207955.8071 226688.5345 216031.6912 242395.0064 191726.3113 180262.5031 1.013424363 1.168725967 1.106896845 1.045134998 1.153627646 1.257546803 1.198428334 1.344677913 1.06359508 1 17.4597398 -5.978735441 7.651635278 1.197097882 1.091987998 0.133414365 0.09827981 0.278900044 72.71766516 0.029265762 0.032751342 1.05E-06 5.978735441 -0.105109884 KNSITEIS(ph)DNEDDLLEYHR ddPTM_HeLa_A485_30min_R1 1 KNSITEISDNEDDLLEYHR 19 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KNS(0.002)IT(0.002)EIS(0.995)DNEDDLLEYHR 166.91 1.47E-12 171970000 203270 162420 159760 231110 248920 175940 255720 238230 167720 299120 TRUE FALSE FALSE 248486.7102 181413.6061 218861.8722 243734.9541 224136.6508 185151.9463 201083.333 179803.719 201379.8656 224554.8889 1.106574484 0.807880902 0.974647549 1.085413706 0.998137479 0.824528681 0.895475195 0.800711665 0.89679573 1 17.77670861 -6.249700861 24.54994946 0.871795042 0.988105814 0.26936117 0.090097549 788.8899025 1649885.858 0.029626289 0.029376915 5.63E-07 6.249700861 0.116310772 KNSITEIS(ph)DNEDDLLEYHR ddPTM_HeLa_A486_30min_R1 1 KNSITEISDNEDDLLEYHR 19 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KNSIT(0.004)EIS(0.996)DNEDDLLEYHR 228.18 3.93E-35 156550000 181910 172170 97514 79735 167140 210000 235870 223440 144880 210210 TRUE FALSE FALSE 169159.0484 158526.6222 135274.0323 185627.1096 146175.7427 184092.3351 176852.8312 172567.5897 157438.3151 157572.0478 1.07353462 1.006058019 0.858490032 1.17804593 0.927675592 1.168305786 1.122361699 1.095166256 0.999151292 1 17.26565211 -5.26904192 24.99967507 1.074401203 0.982030601 0.177855142 0.089011672 960.1227601 3157201.89 0.024461495 0.037069925 5.38E-06 5.26904192 -0.092370601 KNSITEIS(ph)DNEDDLLEYHRR ddPTM_HeLa_A486_30min_R1 1 KNSITEISDNEDDLLEYHRR 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KNS(0.006)IT(0.122)EIS(0.872)DNEDDLLEYHRR 92.41 0.00023106 200550000 78301 65173 38909 42065 75345 83684 103610 99155 48208 116070 TRUE FALSE FALSE 72812.50425 60008.45412 53975.60682 97929.44585 65894.52754 73359.91892 77685.68213 76579.57104 52386.70826 87005.31651 0.836874195 0.689710199 0.620371363 1.125557032 0.757362081 0.843165934 0.892884311 0.880171168 0.602109277 1 16.40881594 -11.49793381 2.197770964 3.35615789 0.81040703 0.139080362 0.144791484 7432000.603 718788.9166 86973961.15 0.03647388 3.18E-12 11.49793381 -2.54575086 KNSS(ph)RDS(ph)GRGDSVSDSGSDALR ddPTM_HeLa_A486_30min_R1 1 KNSSRDSGRGDSVSDSGSDALR 22 3 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 2 0 KNS(0.425)S(0.586)RDS(0.964)GRGDS(0.018)VS(0.007)DSGSDALR 67.14 0.0049225 1817100000 704350 706440 365960 341980 658500 727670 849670 812120 454380 846470 TRUE FALSE FALSE 654978.7023 650459.1216 507669.5127 796146.7227 575904.7897 637897.4738 637073.5791 627218.0045 493766.0242 634508.4024 1.032261669 1.025138704 0.80009896 1.254745752 0.907639343 1.005341255 1.004042778 0.988510163 0.778186739 1 19.27527974 -7.557551907 24.69392183 0.88717807 1.002618676 0.128951071 0.118155224 311.4903442 221834.7768 0.074966835 0.02833504 2.77E-08 7.557551907 0.115440605 KNSSQSLMVPQSGS(ph)PEPESIR ddPTM_HeLa_A485_30min_R1 2 KNSSQSLMVPQSGSPEPESIR 21 1 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;A0A075B6R8;B7ZB24;H0YGQ3 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 KNSSQSLMVPQS(0.209)GS(0.791)PEPESIR;KNSSQSLMVPQS(0.026)GS(0.974)PEPESIR ; 148.1 9.47E-10 697280000 646530 800600 673990 650880 963640 875700 1057870 1214760 784450 962740 TRUE FALSE FALSE 790348.368 894223.2057 923326.9481 686435.9263 867696.6181 921550.2979 831847.4325 916838.2053 941881.9196 722746.6359 1.093534482 1.237256822 1.277525072 0.949760113 1.20055435 1.27506688 1.150953033 1.268547178 1.30319793 1 19.46313046 -5.97817303 24.9990815 1.216023246 1.146207909 0.051606795 0.114736587 670.162792 767554.5507 0.03517522 0.039881412 1.05E-06 5.97817303 -0.069815337 KNSSQSLMVPQSGS(ph)PEPESIR ddPTM_HeLa_A486_30min_R1 1 KNSSQSLMVPQSGSPEPESIR 21 1 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;A0A075B6R8;B7ZB24;H0YGQ3 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 KNSSQSLMVPQS(0.028)GS(0.972)PEPESIR 134.03 4.54E-07 204680000 272720 263780 213840 111670 314730 262930 327290 305800 232670 321630 TRUE FALSE FALSE 253603.7363 242877.1121 296644.5748 259973.4035 275253.6287 230492.3699 245398.5803 236176.0156 252838.0229 241091.7545 1.051897178 1.007405303 1.230421901 1.078317274 1.141696568 0.956035889 1.017863845 0.979610506 1.048721154 1 17.87922279 -6.259722786 24.99878218 1.000260533 1.102519953 0.423008866 0.059270204 158.2849481 2305115.508 0.020350225 0.019327181 5.50E-07 6.259722786 0.102259421 KNSSTDQGS(ph)DEEGSLQK ddPTM_HeLa_A485_30min_R1 5 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 KNSSTDQGS(1)DEEGSLQK;KNSSTDQGS(1)DEEGSLQK;KNSSTDQGS(1)DEEGSLQK;KNSSTDQGS(1)DEEGSLQK;KNS(0.004)S(0.004)T(0.004)DQGS(0.989)DEEGSLQK ;;;; 257.96 1.03E-51 3077810000 2224020 1480558 990486 3660270 2197990 2214600 3546130 3105800 1884110 5110630 TRUE FALSE FALSE 2718745.576 1653696.379 1356907.989 3860221.282 1979150.398 2330553.032 2788470.356 2344097.68 2262233.595 3836643.995 0.708625971 0.431026799 0.353670549 1.006145289 0.515854586 0.607445735 0.726799349 0.610976073 0.589638652 1 21.87141347 -14 0.248680939 3.296702158 0.580396184 0.313152736 0.169674907 225.6529936 2.241783275 263.4567532 0.250660618 1.00E-14 14 -2.716305973 KNSSTDQGS(ph)DEEGSLQK ddPTM_HeLa_A486_30min_R1 3 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 KNSSTDQGS(1)DEEGSLQK;KNSSTDQGS(1)DEEGSLQK;KNSSTDQGS(1)DEEGSLQK ;; 217.73 2.80E-34 2729030000 1473380 1402670 551596 731270 1142140 1701990 2158100 1862950 1152930 2401680 TRUE FALSE FALSE 1370103.671 1291517.321 765188.7435 1702433.516 998882.1512 1492015.778 1618120.554 1438796.953 1252866.901 1800283.696 0.761048758 0.717396555 0.425037868 0.945647356 0.55484708 0.828767034 0.898814202 0.799205679 0.695927483 1 20.77979284 -6.389851007 9.984351417 0.836251763 0.683416253 0.240174366 0.145269524 0.623258983 47.23499902 0.049545849 0.043668207 4.08E-07 6.389851007 -0.15283551 KNST(ph)DLDSAPEDPT(ph)SPK ddPTM_HeLa_A485_30min_R1 1 KNSTDLDSAPEDPTSPK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 KNS(0.452)T(0.548)DLDSAPEDPT(0.722)S(0.278)PK 128.98 2.08E-05 368440000 138970 91043 47771 319240 135030 106050 230670 170960 76757 369540 TRUE FALSE FALSE 169883.3971 101689.6869 65443.48082 336679.2728 121585.9391 111602.614 181385.4701 129031.7919 92161.42584 277420.4789 0.612367904 0.366554363 0.235899963 1.213606415 0.438273121 0.402286862 0.653828697 0.465112714 0.332208445 1 18.08171476 -10.16163324 4.444735172 1.000087457 0.527528753 0.232782083 0.25894206 176256996.1 27.192374 160053.1574 0.062687146 6.89E-11 10.16163324 -0.472558704 KNST(ph)DLDSAPEDPT(ph)SPK ddPTM_HeLa_A486_30min_R1 1 KNSTDLDSAPEDPTSPK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4;I3L373 I3L2J0 CIC Protein capicua homolog 2 0 KNS(0.357)T(0.643)DLDSAPEDPT(0.643)S(0.357)PK 130.71 1.14E-07 0 193370 180870 58429 144230 149800 218940 325320 272990 119350 421950 TRUE FALSE FALSE 179815.7616 166537.2025 81054.27358 335774.729 131010.6872 191929.4088 243921.4951 210836.1363 129695.3541 316290.9736 0.568513731 0.526531632 0.256264896 1.061600732 0.414209377 0.606812792 0.771193349 0.666589166 0.41005076 1 18.27089286 -11.49962171 2.228082554 6.287131481 0.592602978 0.258081773 0.209939975 17547117.7 545717.4008 473257618.3 0.05628511 3.17E-12 11.49962171 -5.694528503 KNSVHEQEAINS(ph)DPELSNCENFQK ddPTM_HeLa_A485_30min_R1 1 KNSVHEQEAINSDPELSNCENFQK 24 1 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 KNS(0.069)VHEQEAINS(0.93)DPELS(0.001)NCENFQK 80.733 0.0044193 2513400000 63101 62165 40572 44690 65587 67621 72327 108660 63104 91190 TRUE FALSE FALSE 77137.59975 69434.65599 55581.27114 47131.30154 59056.92799 71161.531 56873.74559 82010.96463 75768.39398 68458.01123 1.126787039 1.014266333 0.811903094 0.688470213 0.862673731 1.039491649 0.830782907 1.197974688 1.106786373 1 16.06293176 -7.259926507 24.99873779 1.114285401 0.905381919 0.318836042 0.127342353 162.6144472 2687098.421 0.06862101 0.036855467 5.50E-08 7.259926507 -0.208903482 KNTFTAWS(ph)DEES(ph)DYEIDDRDVNK ddPTM_HeLa_A485_30min_R1 6 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 KNT(0.005)FT(0.014)AWS(0.981)DEES(0.996)DY(0.004)EIDDRDVNK;KNT(0.001)FT(0.001)AWS(0.999)DEES(0.999)DY(0.001)EIDDRDVNK;KNTFTAWS(1)DEES(1)DYEIDDRDVNK;KNTFT(0.001)AWS(0.998)DEES(0.999)DY(0.001)EIDDRDVNK;KNT(0.003)FT(0.003)AWS(0.994)DEES(0.998)DY(0.002)EIDDRDVNK;KNTFTAWS(0.999)DEES(1)DYEIDDRDVNK ;;;;; 218.55 3.89E-38 4111140000 1270669 872694 633177 1978370 1577194 1234414 2265260 2191180 1015157 2835300 TRUE FALSE FALSE 1553324.935 974747.9719 867415.521 2086443.344 1420163.027 1299046.008 1781268.696 1653789.669 1218889.698 2128511.89 0.729770382 0.457948098 0.407522046 0.980235701 0.667209347 0.610307142 0.83686105 0.7769699 0.572648762 1 21.02141372 -14 0.083788697 2.004004029 0.384387458 0.275037924 0.162309276 320.6165581 1.885434655 59.56597357 4.977632341 1.00E-14 14 -1.61961657 KNTFTAWS(ph)DEES(ph)DYEIDDRDVNK ddPTM_HeLa_A486_30min_R1 4 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 KNT(0.003)FT(0.003)AWS(0.994)DEES(0.998)DY(0.002)EIDDRDVNK;KNTFTAWS(1)DEES(1)DYEIDDRDVNK;KNTFTAWS(1)DEES(1)DYEIDDRDVNK;KNT(0.001)FT(0.004)AWS(0.995)DEES(1)DYEIDDRDVNK ;;; 191.25 2.33E-21 1764810000 859495 791409 319865 605580 692847 944011 1360190 1182195 551257 1455540 TRUE FALSE FALSE 799248.8389 728694.8686 443725.2943 1409820.844 605943.6687 827548.5208 1019856.075 913035.0056 599040.4006 1091063.31 0.732541211 0.66787588 0.406690694 1.292153105 0.555369852 0.75847892 0.934735928 0.836830455 0.54904275 1 20.05730339 -14 0.08330152 1.627704339 0.56624566 0.078174608 0.234371221 688.8943445 4.031215296 83.42510843 7.06940123 1.00E-14 14 -1.061458679 KNTFTAWS(ph)DEESDYEIDDR ddPTM_HeLa_A485_30min_R1 3 KNTFTAWSDEESDYEIDDR 19 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNT(0.004)FT(0.003)AWS(0.994)DEESDYEIDDR;KNTFTAWS(1)DEESDYEIDDR;KNTFTAWS(1)DEESDYEIDDR ;; 239.13 8.55E-46 899850000 298701.3 370925 212294.3 311296.7 289387.7 268032.8 350142.4 308066.1 238823.7 346725 TRUE FALSE FALSE 365146.3737 414301.4521 290830.7959 328302.0505 260575.2445 282066.583 275331.6158 232512.4059 286753.426 260292.8385 1.40282912 1.591674418 1.117321543 1.261279612 1.001084955 1.083650955 1.057776378 0.89327239 1.101656994 1 17.98977609 -5.035543211 0.999929112 1.016146087 1.541927913 0.71497684 0.106543697 0.366899168 0.607067246 0.037270445 0.159848195 9.21E-06 5.035543211 0.525781826 KNTFTAWS(ph)DEESDYEIDDR ddPTM_HeLa_A486_30min_R1 3 KNTFTAWSDEESDYEIDDR 19 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNTFTAWS(1)DEESDYEIDDR;KNTFTAWS(1)DEESDYEIDDR;KNTFTAWS(1)DEESDYEIDDR ;; 250.95 9.65E-47 1113670000 454850 400150 219540 255825 275677 346084 386330 337730 324895 494730 TRUE FALSE FALSE 422967.3638 368440.6567 304551.7675 595573.5287 241099.0201 303387.6748 289666.1478 260836.2516 353057.1602 370846.3878 1.140545999 0.993512863 0.821234283 1.60598444 0.650131774 0.818095267 0.781094699 0.703353896 0.952030738 1 18.50046219 KNTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_HeLa_A485_30min_R1 4 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNT(0.008)FT(0.007)AWS(0.984)DEES(0.001)DYEIDDRDVNK;KNT(0.004)FT(0.009)AWS(0.977)DEES(0.011)DYEIDDRDVNK;KNTFT(0.001)AWS(0.999)DEESDYEIDDRDVNK;KNT(0.027)FT(0.021)AWS(0.947)DEES(0.006)DYEIDDRDVNK ;;; 246.76 3.28E-49 3192820000 248649 188894 151226 331935 315048 285383 404147 430957 230120 494121 TRUE FALSE FALSE 303960.1122 210983.5101 207170.7904 350067.7685 283680.7149 300325.2126 317797.6919 325264.12 276302.9732 370945.7283 0.819419362 0.568771909 0.558493533 0.943716942 0.764749917 0.809620356 0.856722878 0.876850966 0.744860911 1 18.5008486 -2.6346514 0.080693367 1.187485183 9.31E-14 0.347220989 0.110189312 150.9384388 1.250530586 3.68931904 20.88455895 0.002319256 2.6346514 -1.187485183 KNTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_HeLa_A486_30min_R1 4 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNT(0.001)FT(0.001)AWS(0.998)DEES(0.001)DYEIDDRDVNK;KNTFT(0.001)AWS(0.999)DEESDYEIDDRDVNK;KNTFTAWS(0.991)DEES(0.009)DYEIDDRDVNK;KNTFTAWS(0.999)DEES(0.001)DYEIDDRDVNK ;;; 244.62 4.52E-49 1464020000 729185 664141 275601 397390 629465 826291 1041276 1013426 517469 1150429 TRUE FALSE FALSE 678072.897 611512.0484 382321.0881 925144.003 550511.6302 724351.6175 780737.7313 782691.0227 562323.6296 862354.0904 0.786304494 0.709119439 0.443345828 1.072812216 0.638382349 0.839970061 0.905356326 0.907621395 0.652079738 1 19.71792085 -5.258560814 24.99921397 0.847499846 0.652542891 0.292833191 0.150935851 347.0494215 3013973.603 0.040239613 0.065971855 5.51E-06 5.258560814 -0.194956955 KNY(ph)MS(ph)NPSY(ph)NY(ph)EIVNRASLACGPMVK ddPTM_HeLa_A485_30min_R1 1 KNYMSNPSYNYEIVNRASLACGPMVK 26 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 4 0 KNY(0.915)MS(0.592)NPS(0.618)Y(0.686)NY(0.686)EIVNRAS(0.503)LACGPMVK 41.734 0.021084 143040000 24105 15747 9123.7 33183 15282 21673 27352 21789 15987 42423 TRUE FALSE FALSE 29467.07409 17588.47467 12498.9363 34995.70327 13760.47042 22807.76477 21508.02175 16445.21359 19195.44426 31847.72684 0.925248896 0.55226782 0.392459291 1.098844619 0.432070725 0.716150477 0.675339306 0.51637009 0.602725725 1 14.95890278 -10.44026492 3.994376139 1.002030378 0.650527446 0.198825931 0.206311134 35075510.17 91699649.24 415086.1085 0.047555312 3.63E-11 10.44026492 -0.351502931 KNY(ph)MSNPSY(ph)NY(ph)EIVNRAS(ph)LACGPMVK ddPTM_HeLa_A485_30min_R1 2 KNYMSNPSYNYEIVNRASLACGPMVK 26 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 4 0 KNY(0.717)MS(0.625)NPS(0.657)Y(0.717)NY(0.717)EIVNRAS(0.567)LACGPMVK;KNY(0.88)MS(0.5)NPS(0.542)Y(0.63)NY(0.63)EIVNRAS(0.819)LACGPMVK ; 48.088 0.013406 665050000 49255 36418 25699.3 84340 51134 57782 75563 61687 37167 125549 TRUE FALSE FALSE 60211.60482 40676.76831 35206.54051 88947.28064 46042.91942 60807.37617 59418.34776 46558.16653 44626.07598 94251.94486 0.638836736 0.431574843 0.373536488 0.943718252 0.488508958 0.645157787 0.630420389 0.493975659 0.473476447 1 16.52423477 -10.74717058 2.751011365 1.086719577 0.569544383 0.417786633 0.152706222 69377433.41 57608934.1 41039259.57 0.037580223 1.79E-11 10.74717058 -0.517175193 KNYYK(ac)R ddPTM_HeLa_A485_30min_R1 2 KNYYKR 6 2 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5;Q9GZZ1-2 C9J5D1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 0 1 ; KNYYK(1)R;KNYYK(1)R 132.94 0.031524 306610000 466410 495450 484130 418670 621110 601310 700830 796820 481300 609890 FALSE TRUE FALSE 570161.2954 553388.5677 663229.8333 441540.882 559270.1076 632793.6618 551091.9452 601398.6456 577892.4953 457855.6472 1.245286148 1.208652926 1.44855663 0.964367011 1.221498765 1.382081155 1.203636886 1.313511473 1.262171819 1 18.80453329 -9.983442589 7.136049556 0.999999986 1.249752744 0.276257282 0.121380527 2.64E-08 3.86E-09 0.115458787 0.028002867 1.04E-10 9.983442589 0.249752758 KNYYK(ac)R ddPTM_HeLa_A486_30min_R1 2 KNYYKR 6 2 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5;Q9GZZ1-2 C9J5D1;Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 0 1 ; KNYYK(1)R;KNYYK(1)R 145.87 0.026086 298810000 578770 626850 579630 236320 784590 678780 729840 733750 576820 683240 FALSE TRUE FALSE 538201.2118 577176.1231 804078.259 550164.903 686179.4062 595039.0249 547226.3125 566691.1426 626819.222 512152.2569 1.05086174 1.126961983 1.569998469 1.074221378 1.339795729 1.161840091 1.06848365 1.106489594 1.223892336 1 18.96621324 -6.515329141 21.5242634 1.109529172 1.237916796 0.148667502 0.148836775 117.0563064 333744.9132 0.054954266 0.044620902 3.05E-07 6.515329141 0.128387624 KPAAAAGAK(ac)K ddPTM_HeLa_A485_30min_R1 2 KPAAAAGAKK 10 2 P10412 P10412 HIST1H1E Histone H1.4 0 1 ; KPAAAAGAK(1)K;KPAAAAGAK(1)K 100.88 0.0041046 0 276890 258560 146136 377500 181731 369940 284380 800360 376150 749500 FALSE TRUE FALSE 338483.2252 288796.3428 200197.7876 398121.8691 163637.2235 389309.4864 223619.8898 604070.4551 451639.8547 562663.4435 0.601573159 0.513266583 0.355803793 0.707566617 0.290826115 0.691904709 0.397430991 1.073591082 0.802682065 1 19.10191271 -7.260782767 24.99999599 0.953602444 0.509018599 0.675831896 0.142938656 32.12064912 1223025.945 0.066042712 0.035169898 5.49E-08 7.260782767 -0.444583845 KPAAAGVK(ac)K ddPTM_HeLa_A485_30min_R1 2 KPAAAGVKK 9 2 P16401 P16401 HIST1H1B Histone H1.5 0 1 ; KPAAAGVK(1)K;KPAAAGVK(1)K 109.66 0.0073406 0 348860 443220 357450 459580 592840 485850 635180 1481890 693460 1400690 FALSE TRUE FALSE 426462.7034 495050.7235 489685.6297 484685.6917 533814.768 511288.3547 499468.6041 1118454.154 832631.0612 1051523.761 0.405566397 0.470793663 0.465691455 0.460936509 0.507658303 0.486235665 0.474995072 1.063650861 0.791832855 1 20.00405002 -7.252188705 24.88078703 0.945806394 0.469497932 0.913794165 0.068172887 143.4254195 385760.9197 0.029988475 0.017005864 5.60E-08 7.252188705 -0.476308461 KPAAAGVK(ac)K ddPTM_HeLa_A486_30min_R1 2 KPAAAGVKK 9 2 P16401 P16401 HIST1H1B Histone H1.5 0 1 ; KPAAAGVK(1)K;KPAAAGVK(1)K 110.14 0.0072165 0 520120 556830 391940 213730 509650 594640 697370 603620 390710 641560 FALSE TRUE FALSE 483662.2739 512704.7629 543709.6645 497574.2413 445724.9447 521279.3627 522880.65 466188.9029 424577.0574 480909.2001 1.005724727 1.066115522 1.130586947 1.034653197 0.926838049 1.083945498 1.087275207 0.969390693 0.882863246 1 18.875405 -7.436944187 5.318927712 0.936528182 1.047545379 0.375529614 0.057973612 0.226319721 10.43911872 0.03484624 0.015915222 3.66E-08 7.436944187 0.111017197 KPAAATVTK(ac)K ddPTM_HeLa_A485_30min_R1 2 KPAAATVTKK 10 2 P16403 P16403 HIST1H1C Histone H1.2 0 1 ; KPAAATVTK(1)K;KPAAATVTK(1)K 151.13 1.54E-05 0 129390 168808 154002 165495 237050 202457 223150 459460 249980 462870 FALSE TRUE FALSE 158172.3591 188548.6272 210973.7484 174535.5728 213448.4697 213057.3355 175472.1795 346776.7146 300148.693 347485.0275 0.455191869 0.542609357 0.60714486 0.502282283 0.614266667 0.613141052 0.50497767 0.997961602 0.863774463 1 18.40659129 -7.261350567 24.99999881 0.948151046 0.553780205 0.902632895 0.060989438 2.23992533 630748.5928 0.030233436 0.01601163 5.48E-08 7.261350567 -0.394370841 KPAAATVTK(ac)K ddPTM_HeLa_A486_30min_R1 1 KPAAATVTKK 10 2 P16403 P16403 HIST1H1C Histone H1.2 0 1 KPAAATVTK(1)K 117.23 0.0018309 0 15872 20239 16132 6317.4 21037 16440 20017 20188 13456 21192 FALSE TRUE FALSE 14759.45476 18635.18793 22378.74243 14707.22646 18398.3433 14411.79995 15008.53488 15591.6331 14622.37691 15885.38526 0.929121612 1.173102674 1.408762964 0.925833791 1.158193081 0.907236413 0.944801441 0.981508024 0.920492432 1 13.95541246 -5.973458684 1.552182279 0.950997787 1.149237183 0.256802654 0.133201176 0.509255229 2.511976491 0.05291741 0.060168275 1.06E-06 5.973458684 0.198239396 KPAFNLS(ph)AFGTLSPSLGNSSILK ddPTM_HeLa_A486_30min_R1 1 KPAFNLSAFGTLSPSLGNSSILK 23 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 KPAFNLS(0.994)AFGT(0.006)LSPSLGNSSILK 88.001 0.0013989 23681000 87092 101860 71972 40644 94798 99165 118540 112490 77913 118830 TRUE FALSE FALSE 80987.30054 93788.24263 99841.48588 94621.28603 82907.55088 86931.03054 88880.03821 86878.48264 84666.56157 89074.19455 0.909211708 1.052922714 1.12088003 1.062274955 0.930769583 0.975939563 0.997820285 0.975349629 0.950517285 1 16.44271991 -5.750114057 24.99134022 0.972014923 1.043547935 0.258607452 0.053013208 293.6256628 647934.5855 0.016334772 0.0208954 1.78E-06 5.750114057 0.071533011 KPAFNLSAFGTLS(ph)PSLGNSSILK ddPTM_HeLa_A485_30min_R1 1 KPAFNLSAFGTLSPSLGNSSILK 23 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 KPAFNLSAFGTLS(0.999)PSLGNSSILK 275.37 5.27E-75 938780000 196250 189940 173730 208250 236860 242150 283000 289840 180880 278370 TRUE FALSE FALSE 239905.1354 212151.8307 237999.9565 219626.1702 213277.3867 254828.5996 222534.7381 218756.2855 217180.9569 208977.482 1.147995148 1.015189908 1.138878477 1.050956151 1.020575924 1.219406977 1.064874244 1.046793575 1.039255305 1 17.67298797 -7.224940313 3.423066639 1.02981182 1.09401689 0.210410839 0.059725157 0.43348875 10.50920655 0.032893288 0.016394604 5.96E-08 7.224940313 0.06420507 KPAFNLSAFGTLS(ph)PSLGNSSILK ddPTM_HeLa_A486_30min_R1 2 KPAFNLSAFGTLSPSLGNSSILK 23 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 KPAFNLSAFGTLS(0.992)PS(0.008)LGNSSILK;KPAFNLSAFGTLS(0.499)PS(0.499)LGNS(0.001)SILK ; 194.27 9.95E-22 1856510000 1024679 1032597 731220 427254 995479 1007399 1158960 1154276 919134 1245886 TRUE FALSE FALSE 952854.2935 950770.2531 1014367.967 994668.9042 870616.7413 883116.3539 868975.9498 891472.5525 998805.2752 933908.0362 1.02028707 1.018055543 1.086154019 1.065060869 0.932229628 0.945613829 0.930472719 0.954561389 1.069489967 1 19.83292097 -5.754027998 24.99522627 0.966387525 1.048063015 0.424480181 0.04266118 162.1269958 546777.5812 0.013213399 0.016717478 1.76E-06 5.754027998 0.08167549 KPALGFYDT(ph)SEENYQALDADFRK ddPTM_HeLa_A486_30min_R1 1 KPALGFYDTSEENYQALDADFRK 23 2 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 KPALGFYDT(0.973)S(0.027)EENYQALDADFRK 198.06 1.13E-28 81942000 65250 59883 37876 31782 63099 60143 69560 78012 41817 66351 TRUE FALSE FALSE 60676.31195 55137.65299 52542.60155 73990.10217 55184.53505 52723.16815 52155.35227 60250.37059 45441.73123 49736.27773 1.219960856 1.108600312 1.056424082 1.487648565 1.109542925 1.060054563 1.048638029 1.211396858 0.913653641 1 15.60201092 -5.98648194 24.99542305 1.062825592 1.211257311 0.286308137 0.126278018 351.8487792 650578.573 0.039312391 0.044554709 1.03E-06 5.98648194 0.148431719 KPALPVS(ph)PAAR ddPTM_HeLa_A485_30min_R1 3 KPALPVSPAAR 11 1 A0A087WWF4;A0A087X0M4;Q9BWU0 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 KPALPVS(1)PAAR;KPALPVS(1)PAAR;KPALPVS(1)PAAR ;; 103.88 0.00049977 4357730000 3274650 2803840 3195310 3787940 3942820 2879330 3543720 2996730 3433180 4785120 TRUE FALSE FALSE 4003084.595 3131724.698 4377388.137 3994865.571 3550258.997 3030087.267 2786575.272 2261777.269 4122187.735 3592277.648 1.114358351 0.87179361 1.218555069 1.112070381 0.988303061 0.843500298 0.775712666 0.629622065 1.147513678 1 21.77646743 -6.092227122 3.346596002 0.849946681 1.073146376 0.267429284 0.151859616 0.310342379 6.596283975 0.051685127 0.052961186 8.09E-07 6.092227122 0.223199695 KPALPVS(ph)PAAR ddPTM_HeLa_A486_30min_R1 2 KPALPVSPAAR 11 1 A0A087WWF4;A0A087X0M4;Q9BWU0 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 KPALPVS(1)PAAR;KPALPVS(1)PAAR ; 102.15 0.00064148 4503900000 4352600 4995000 3897500 1546160 4801000 4594500 4980400 5053700 4155400 4342300 TRUE FALSE FALSE 4047505.217 4599178.009 5406716.379 3599538.619 4198813.812 4027677.303 3734251.243 3903082.831 4515593.418 3254959.816 1.243488536 1.412975357 1.661070085 1.10586269 1.289974085 1.237396936 1.147249568 1.199118592 1.38729621 1 21.6342083 -5.282301559 24.97196317 1.20726806 1.43655778 0.400705575 0.136127732 802.722133 960853.9902 0.037714681 0.0560048 5.22E-06 5.282301559 0.22928972 KPALVAK ddPTM_HeLa_A485_30min_R1 1 KPALVAK 7 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72;H0YE58;P24534 P29692-2;P24534 EEF1D;EEF1B2 Elongation factor 1-delta;Elongation factor 1-beta 0 0 77.674 0.013354 0 25230 22252 19468 23945 27527 25582 32791 32928 23421 44670 FALSE FALSE TRUE 30842.32646 24854.17783 26670.02333 25253.05472 24786.31523 26921.43396 25784.93497 24852.35637 28121.37987 33534.59109 0.91971679 0.741150467 0.795298898 0.753044957 0.739126807 0.802795952 0.768905603 0.741096151 0.838578285 1 15.03336239 -8.08568929 5.082523207 0.999981459 0.779766703 0.62351886 0.050844377 0.331970191 18.51252271 0.046654869 0.012152433 8.21E-09 8.08568929 -0.220214757 KPAPAPPKPGNPPPGHPGGQSSSGTSQHPPS(ph)LSPKPPTR ddPTM_HeLa_A485_30min_R1 1 KPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTR 39 3 Q68EM7-2;I3L460;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 KPAPAPPKPGNPPPGHPGGQS(0.005)S(0.017)S(0.005)GT(0.003)S(0.004)QHPPS(0.483)LS(0.483)PKPPTR 109.14 9.93E-06 836290000 189010 348130 256130 56133 479030 229730 297070 271770 265350 188150 TRUE FALSE FALSE 231054.6224 388840.7752 350883.1455 59199.40365 431336.0912 241758.3076 233598.5677 205117.9814 318603.3111 141247.6676 1.635811948 2.752900502 2.484169483 0.419117743 3.053757265 1.711591502 1.653822478 1.452186679 2.255635908 1 17.10786752 -10.70109083 0.16565531 5.79E-12 2.278516609 0.133403036 0.712741473 71.19785224 1.907592338 33.66927173 3.377205734 1.99E-11 10.70109083 2.278516609 KPAPEK(ac)KPAEK ddPTM_HeLa_A485_30min_R1 2 KPAPEKKPAEK 11 3 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 1 ; KPAPEK(0.913)K(0.087)PAEK;KPAPEK(0.748)K(0.252)PAEK 100.22 0.0062332 55265000 117665 78215 64798 143672 131607 123525 183538 140850 113964 245655 FALSE TRUE FALSE 143839.1733 87361.56387 88769.47667 151520.4376 118503.745 129992.578 144323.6069 106306.3167 136835.5295 184417.7294 0.77996391 0.473715646 0.481350014 0.821615351 0.642583256 0.704881133 0.782590738 0.57644304 0.741986846 1 17.49261783 -14 0.178490544 2.376305877 0.590100135 0.444163675 0.114863501 125.9347743 1.208551253 61.36719417 0.372864381 1.00E-14 14 -1.786205742 KPAPEK(ac)KPAEK ddPTM_HeLa_A486_30min_R1 2 KPAPEKKPAEK 11 3 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 1 ; KPAPEK(0.968)K(0.032)PAEK;KPAPEK(0.753)K(0.247)PAEK 107.65 0.0042074 161884000 310990 312970 141237 147967 300230 357800 439280 398530 261800 478350 FALSE TRUE FALSE 289191.207 288169.1174 195927.7489 344474.6538 262572.3539 313658.2738 329367.4978 307793.4188 284493.0348 358568.0465 0.806516949 0.803666473 0.546417203 0.960695347 0.732280404 0.874752441 0.918563439 0.858396117 0.793414354 1 18.4518874 -5.851136384 1.176743897 0.881188934 0.744862328 0.227019984 0.107384976 0.752608019 2.207997646 0.045482257 0.060754369 1.41E-06 5.851136384 -0.136326607 KPAPPQHFS(ph)PR ddPTM_HeLa_A485_30min_R1 2 KPAPPQHFSPR 11 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 KPAPPQHFS(1)PR;KPAPPQHFS(1)PR ; 115.04 0.00030779 409240000 200184 234175 228229 183425 308520 217132 231499 288902 226741 253527 TRUE FALSE FALSE 244714.2402 261559.7292 312660.4045 193445.0433 277802.6655 228500.6958 182037.3475 218048.3315 272245.8389 190327.3847 1.285754231 1.374262193 1.64275049 1.016380504 1.459604281 1.200566572 0.956443277 1.145648756 1.430408132 1 17.53812363 -5.921999305 1.123476931 1.147454796 1.394384961 0.211156865 0.191322682 0.788398728 2.116018111 0.087745096 0.110178459 1.20E-06 5.921999305 0.246930165 KPAT(ph)PAEDDEDDDIDLFGS(ph)DNEEEDK ddPTM_HeLa_A486_30min_R1 1 KPATPAEDDEDDDIDLFGSDNEEEDK 26 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 2 0 KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDK 161.29 1.01E-13 97100000 95444 72372 23982 50224 29958 77150 89593 67844 46786 215590 TRUE FALSE FALSE 88753.86847 66636.97915 33268.47266 116924.0102 26200.38829 67632.0174 67175.88378 52397.40222 50841.44815 161604.8607 0.549202964 0.412345141 0.205863069 0.723517904 0.162126239 0.418502371 0.415679847 0.324231598 0.314603459 1 17.30211107 -10.6050162 4.114168457 1.014477994 0.389425998 0.586785703 0.153106277 0.019262583 0.001849317 0.140445567 0.033905209 2.48E-11 10.6050162 -0.625051996 KPAT(ph)PAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_A485_30min_R1 7 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 2 0 KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;;;;;; 250.28 1.62E-50 38284287000 832665 506784 369678.4 1723073 901482 692614 1376729 1151331 586577 2098627 TRUE FALSE FALSE 1017888.457 566047.9804 506437.8238 1817200.115 811727.2868 728878.1981 1082579.602 868965.267 704297.6235 1575477.911 0.646082341 0.359286523 0.321450285 1.15342786 0.515226066 0.462639427 0.687143625 0.551556617 0.447037447 1 20.5873581 -10.77574926 2.800955771 1.100519041 0.573008263 0.249827547 0.222724245 68249570.89 55473795.28 47123516.3 0.055622967 1.68E-11 10.77574926 -0.527510777 KPAT(ph)PAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_A486_30min_R1 4 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 2 0 KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;;; 155.51 3.00E-09 39505830000 357905 339156 282539 260835 318528 411091 560771 448436 272679 650686 TRUE FALSE FALSE 332817.7077 312280.0434 391945.6675 607237.0619 278575.2481 360374.7721 420460.1646 346336.9121 296315.0353 487749.9903 0.682353079 0.640246129 0.803579037 1.244976061 0.571143524 0.738851418 0.862040334 0.710070567 0.60751418 1 18.89578232 KPATPAEDDEDDDIDLFGS(ph)DNEEEDK ddPTM_HeLa_A485_30min_R1 1 KPATPAEDDEDDDIDLFGSDNEEEDK 26 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDK 237.42 1.42E-49 692470000 1064600 817510 301250 1322400 416970 662660 932270 687020 390410 1418300 TRUE FALSE FALSE 1301416.597 913110.6831 412694.9111 1394639.364 375455.0027 697355.8529 733082.8986 518527.2678 468761.7059 1064743.912 1.222281323 0.857587137 0.38760016 1.30983549 0.3526247 0.654951717 0.688506307 0.486997166 0.4402577 1 20.02207505 -1.148743128 0.887359703 0.640341273 199.9999997 0.251154232 0.283953786 831.9957417 2.608649943 0.092153946 334693.0224 0.070999759 1.148743128 199.3596584 KPATPAEDDEDDDIDLFGS(ph)DNEEEDK ddPTM_HeLa_A486_30min_R1 3 KPATPAEDDEDDDIDLFGSDNEEEDK 26 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDK;KPATPAEDDEDDDIDLFGS(1)DNEEEDK;KPATPAEDDEDDDIDLFGS(1)DNEEEDK ;; 282.1 3.13E-76 4399200000 3228220 2184730 485880 1152290 865940 2170760 2536160 2077490 1473070 5761100 TRUE FALSE FALSE 3001938.449 2011604.038 674025.7483 2682589.354 757325.7306 1902953.702 1901585.943 1604490.878 1600756.894 4318483.062 0.695137252 0.46581265 0.156079285 0.621187884 0.175368462 0.440653274 0.440336552 0.371540389 0.370675737 1 22.0420932 -10.18361128 3.630175413 1.000641939 0.408275086 0.547899512 0.159254509 225188575.5 368735761.4 1657039.612 0.039445801 6.55E-11 10.18361128 -0.592366852 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_A485_30min_R1 9 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;;;;;;;; 318.6 7.86E-110 5.66E+11 1929756 1222836.1 845115 3568117 1866524 1589735 2793090 2102601 1399609.7 4532209 TRUE FALSE FALSE 2359023.565 1365836.145 1157758.207 3763034.197 1680686.317 1672971.066 2196323.504 1586934.808 1680498.529 3402412.705 0.693338454 0.40143165 0.340275653 1.105989932 0.493968975 0.491701393 0.645519428 0.466414555 0.493913782 1 21.69812672 -10.13551456 4.705673885 1.00003602 0.568910678 0.284538997 0.204410376 7.91E-05 1.45E-05 0.19795885 0.048007976 7.32E-11 10.13551456 -0.431125342 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_A486_30min_R1 17 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;;;;;;;;;;;;;;;; 425 3.11E-241 5.85E+11 5794981 5784536 2282924 4084560 4309084 7663300 9426922 8266074 4378598 11555180 TRUE FALSE FALSE 5388782.757 5326148.3 3166933.312 9509062.102 3768598.504 6717879.961 7068206.408 6384069.397 4758138.4 8661687.716 0.622140042 0.614908835 0.365625432 1.09783017 0.435088245 0.775585565 0.816031083 0.737046821 0.549331557 1 23.04621673 -14 0.138603128 2.047478901 0.560334343 0.200357886 0.19729566 230.3356802 1.961711066 67.65928581 1.215872511 1.00E-14 14 -1.487144559 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLREER ddPTM_HeLa_A485_30min_R1 6 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 35 3 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER ;;;;; 309.99 1.64E-109 7550090000 130241.1 96824.6 215129.8 556177 1326451 347180.4 1126378 1277208 432682 1177660 TRUE FALSE FALSE 159212.7834 108147.3947 294715.2653 586559.5412 1194384.881 365358.2289 885718.1386 963970.7354 519517.3086 884091.0352 0.180086413 0.122326085 0.33335398 0.663460569 1.350974994 0.413258606 1.001840425 1.090352347 0.587628749 1 19.75383541 -5.283132116 2.787510313 0.897561951 0.171814428 0.609546324 0.248793573 0.176143359 2.729313755 0.070692749 0.12364243 5.21E-06 5.283132116 -0.725747524 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLREER ddPTM_HeLa_A486_30min_R1 6 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 35 3 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER ;;;;; 327.33 7.15E-128 12774860000 445146.3 640342.3 834848 2446915 4087506 1781425 4142225 5455747 606128.1 1164322.6 TRUE FALSE FALSE 413943.8431 589599.2441 1158123.504 5696541.78 3574812.883 1561650.896 3105796.493 4213592.506 658667.7717 872768.6425 0.474288171 0.675550444 1.326953613 6.526978059 4.095945602 1.789306833 3.558556463 4.827845893 0.754687714 1 19.73523974 -3.003353293 9.481453833 2.691429872 1.497406417 0 2.006671126 192353315.4 60929996.99 0.495031682 0 0.000992308 3.003353293 -1.194023455 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDIT(ph)TPPNK ddPTM_HeLa_A485_30min_R1 1 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITTPPNK 40 3 P27816;P27816-6 P27816 MAP4 Microtubule-associated protein 4 1 0 KPCNSQPSELSSETSGIARPEEGRPVVS(0.046)GT(0.211)GNDIT(0.531)T(0.211)PPNK 96.126 1.62E-05 2689700000 262650 194290 167030 304320 227930 224260 259130 222890 214710 379050 TRUE FALSE FALSE 321075.5864 217010.5254 228821.3477 320944.231 205236.4889 236001.9068 203764.7586 168225.878 257800.3276 284559.8109 1.128323727 0.762618322 0.80412391 1.127862118 0.721242006 0.829357828 0.716070052 0.591179329 0.905961832 1 18.1183724 -5.816077413 24.99999448 0.771401873 0.931113202 0.196831807 0.152937734 144.9575253 66325.27641 0.046424503 0.052640478 1.53E-06 5.816077413 0.159711329 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDIT(ph)TPPNK ddPTM_HeLa_A486_30min_R1 2 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITTPPNK 40 3 P27816;P27816-6 P27816 MAP4 Microtubule-associated protein 4 1 0 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDIT(0.537)T(0.462)PPNK;KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDIT(0.5)T(0.5)PPNK ; 179.65 1.73E-21 1105290000 538600 565040 270200 165527 391070 519550 542660 514360 434180 560410 TRUE FALSE FALSE 500846.9213 520264.1726 374828.6762 385355.2213 342018.354 455453.2034 406880.7283 397251.4564 471815.072 420079.6883 1.192266456 1.238489237 0.892279933 0.917338381 0.814174938 1.084206678 0.968579866 0.945657377 1.123156118 1 18.6803035 -4.754792745 24.99939257 0.963076321 1.215377959 0.574241657 0.085052454 106.1995796 399428.673 0.022156835 0.05580737 1.76E-05 4.754792745 0.252301638 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITT(ph)PPNK ddPTM_HeLa_A485_30min_R1 1 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITTPPNK 40 3 P27816;P27816-6 P27816 MAP4 Microtubule-associated protein 4 1 0 KPCNSQPSELSSETSGIARPEEGRPVVS(0.001)GT(0.001)GNDIT(0.2)T(0.798)PPNK 99.221 1.21E-05 313460000 96801 78494 60306 132900 79943 70719 94244 82433 83093 148410 TRUE FALSE FALSE 118334.0485 87673.19049 82615.69894 140159.9905 71983.59422 74421.73749 74107.9995 62216.1775 99769.00293 111414.1183 1.062109994 0.786912753 0.74151912 1.258009242 0.646090418 0.667974029 0.665158066 0.558422743 0.895478997 1 16.76557254 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITT(ph)PPNK ddPTM_HeLa_A486_30min_R1 2 KPCNSQPSELSSETSGIARPEEGRPVVSGTGNDITTPPNK 40 3 P27816;P27816-6 P27816 MAP4 Microtubule-associated protein 4 1 0 KPCNSQPSELSSETSGIARPEEGRPVVS(0.001)GT(0.001)GNDIT(0.22)T(0.778)PPNK;KPCNSQPSELSSETSGIARPEEGRPVVS(0.001)GT(0.002)GNDIT(0.193)T(0.804)PPNK ; 113.88 2.72E-06 6862600000 294513 283242 156070 97049 220131 286188 311939 257721 253220 316410 TRUE FALSE FALSE 273869.1596 260796.8724 216504.4837 225934.9766 192520.1173 250881.0343 233888.5628 199043.5543 275169.3135 237178.8765 1.154694565 1.099578833 0.912832065 0.952593165 0.811708531 1.057771409 0.98612729 0.839212822 1.160176309 1 17.855616 -4.642625315 4.848264688 0.957758617 1.141479133 0.317803829 0.095653836 0.213330642 7.891204557 0.023639187 0.06685279 2.28E-05 4.642625315 0.183720516 KPCSETSQIEDTPSSKPTLLANGGHGVEGSDT(ph)TGSPTEFLEEK ddPTM_HeLa_A486_30min_R1 1 KPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEK 43 2 P27816;P27816-6;P27816-2;H7C456 P27816 MAP4 Microtubule-associated protein 4 1 0 KPCSETSQIEDTPS(0.001)S(0.001)KPT(0.001)LLANGGHGVEGS(0.047)DT(0.266)T(0.236)GS(0.21)PT(0.236)EFLEEK 69.353 0.00078022 560950000 42410 57409 33396 13298 46426 67781 71562 61640 47525 58043 TRUE FALSE FALSE 39437.27801 52859.70176 46327.82558 30958.41604 40602.81817 59418.86937 53656.43069 47605.91759 51644.50527 43508.655 0.906423745 1.21492383 1.064795627 0.711546152 0.933212442 1.365679297 1.233235794 1.094171208 1.186993835 1 15.4090148 -6.233574853 24.90535553 1.185477993 0.971331701 0.333609961 0.147892509 882.6893223 788949.5644 0.051734307 0.051723286 5.84E-07 6.233574853 -0.214146292 KPDS(ph)PPKVLEPENK ddPTM_HeLa_A485_30min_R1 1 KPDSPPKVLEPENK 14 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 KPDS(1)PPKVLEPENK 83.253 0.0014115 533790000 260810 110270 73276 828110 247610 195310 456250 296130 158140 1069400 TRUE FALSE FALSE 318826.2847 123165.1173 100383.8417 873347.5524 222957.079 205536.1296 358768.4603 223503.6532 189877.2475 802818.2608 0.397133823 0.153415939 0.12503931 1.087852127 0.277717997 0.256018254 0.446886273 0.278398816 0.236513364 1 19.61471391 -10.29712259 3.234709277 1.003286727 0.364772248 0.351309884 0.260018166 86726887.51 121002922.3 2847437.531 0.069242446 5.05E-11 10.29712259 -0.638514479 KPDS(ph)PPKVLEPENK ddPTM_HeLa_A486_30min_R1 3 KPDSPPKVLEPENK 14 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 KPDS(1)PPKVLEPENK;KPDS(1)PPKVLEPENK;KPDS(1)PPKVLEPENK ;; 132.79 6.96E-06 1627110000 874800 942320 275305 1262700 733160 1602160 2499030 2059640 763720 2825300 TRUE FALSE FALSE 813481.0375 867647.1313 381910.4689 2939629.413 641200.2364 1404501.789 1873746.262 1590704.934 829919.8645 2117826.49 0.384111277 0.409687543 0.180331331 1.388040723 0.302763347 0.663180763 0.884749657 0.751102577 0.391873399 1 21.01415297 KPEEES(ph)PR ddPTM_HeLa_A485_30min_R1 8 KPEEESPR 8 1 P49321;P49321-3;P49321-4;P49321-2;H0YF33;Q5T624 P49321 NASP Nuclear autoantigenic sperm protein 1 0 KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR;KPEEES(1)PR ;;;;;;; 87.667 0.0025594 7166004000 13171540 8810010 3179352 16453070 2954103 12512440 6319820 9133130 7842830 14417870 TRUE FALSE FALSE 16101503.63 9840264.033 4355526.609 17351859.55 2659982.133 13167572.01 4969538.829 6893215.547 9416814.042 10823760.35 1.487607182 0.909135431 0.402404199 1.603126731 0.245753975 1.216543196 0.459132378 0.636859587 0.870013169 1 23.36769847 -5.770942384 24.99994568 0.729872261 1.037025795 0.158355878 0.398544122 431.7149066 1135727.239 0.119151202 0.136846418 1.69E-06 5.770942384 0.307153535 KPEEES(ph)PRKDDAK ddPTM_HeLa_A485_30min_R1 7 KPEEESPRKDDAK 13 3 P49321;P49321-3;P49321-4;P49321-2;H0YF33;Q5T624 P49321 NASP Nuclear autoantigenic sperm protein 1 0 KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK ;;;;;; 146.76 4.81E-07 49919660000 4911000 2623632 1435604 11662270 4155930 4156350 9201150 8137520 2970737 15118300 TRUE FALSE FALSE 6003435.007 2930442.94 1966693.66 12299350.28 3742151.017 4373970.059 7235249.136 6141780.461 3566936.667 11349586.04 0.528956297 0.258198222 0.173283294 1.083682721 0.329716961 0.385385867 0.637490135 0.541145769 0.31427901 1 23.43613634 -10.87313106 2.764236865 1.23392082 0.475450523 0.295408538 0.244379161 136572320 87773886.42 209338505.8 0.060299435 1.34E-11 10.87313106 -0.758470297 KPEEES(ph)PRKDDAK ddPTM_HeLa_A486_30min_R1 4 KPEEESPRKDDAK 13 3 P49321;P49321-3;P49321-4;P49321-2;H0YF33;Q5T624 P49321 NASP Nuclear autoantigenic sperm protein 1 0 KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK;KPEEES(1)PRKDDAK ;;; 161.86 9.33E-12 4555420000 5340310 3209150 1402711 5743880 2980330 8357160 11146190 7988370 4140490 14320810 TRUE FALSE FALSE 4965981.846 2954845.266 1945878.265 13372042.92 2606509.221 7326138.569 8357295.37 6169592.536 4499391.007 10734785.96 0.462606508 0.27525889 0.181268474 1.245673921 0.242809613 0.68246713 0.778524639 0.574728975 0.419141194 1 23.35579009 -14 0.067179882 2.424890685 1.59E-15 0.190509052 0.294893032 591.8125059 2.868835874 135.893024 18.33698793 1.00E-14 14 -2.424890685 KPEEMPTACPGHS(ph)PR ddPTM_HeLa_A485_30min_R1 2 KPEEMPTACPGHSPR 15 1 C9J8F8;C9J6I8;Q9NZC9 C9J8F8 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 1 0 KPEEMPTACPGHS(1)PR;KPEEMPTACPGHS(1)PR ; 215.98 1.63E-33 550930000 684590 822690 704610 760870 939650 861680 1014970 1100740 716060 990000 TRUE FALSE FALSE 836874.6837 918896.439 965274.5603 802434.4015 846095.1467 906796.2324 798113.368 830781.7891 859766.6739 743211.2196 1.126025363 1.236386662 1.298789005 1.079685533 1.138431612 1.220105683 1.073871528 1.117827298 1.156826823 1 19.50341276 -14 0.094423883 0.452943205 1.289734961 0.401234721 0.064404401 201.4895737 1.307682173 21.71424044 1.339908003 1.00E-14 14 0.836791756 KPEEMPTACPGHS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KPEEMPTACPGHSPR 15 1 C9J8F8;C9J6I8;Q9NZC9 C9J8F8 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 1 0 KPEEMPTACPGHS(1)PR;KPEEMPTACPGHS(1)PR;KPEEMPTACPGHS(1)PR;KPEEMPTACPGHS(1)PR ;;; 212.18 4.96E-26 718160000 1042535 1043606 763847 383275 1131595 1032641 1176135 1187989 914524 1217061 TRUE FALSE FALSE 969458.6802 960906.8598 1059629.015 892283.5696 989659.8034 905244.2525 881853.5831 917509.8383 993795.6767 912301.0039 1.062652212 1.05327831 1.161490572 0.978058301 1.084795259 0.992264887 0.966625685 1.005709557 1.089328711 1 19.79915038 -5.279511999 24.98541826 1.016655942 1.088554172 0.351767103 0.047057722 925.1423917 1279008.388 0.013330845 0.019816655 5.25E-06 5.279511999 0.07189823 KPEESLGK(ac)GAAQENGAPECSPR ddPTM_HeLa_A485_30min_R1 2 KPEESLGKGAAQENGAPECSPR 22 2 Q6IE81;Q6IE81-2;Q6IE81-3 Q6IE81 JADE1 Protein Jade-1 0 1 ; KPEESLGK(1)GAAQENGAPECSPR;KPEESLGK(1)GAAQENGAPECSPR 278.95 1.23E-63 208860000 125631 123896 116890 138066 170450 150034 191286 196965 138914 203282 FALSE TRUE FALSE 153577.1825 138384.5594 160132.4752 145608.196 153479.3995 157889.5482 150416.1834 148659.0249 166792.7656 152607.5385 1.006353841 0.906800285 1.049309076 0.954135014 1.005713093 1.034611722 0.985640584 0.974126353 1.092952335 1 17.2194667 -5.548090311 0.548177294 1.02034718 0.962833673 0.116675047 0.046041924 2.826606109 1.571717582 0.032744496 0.088915315 2.83E-06 5.548090311 -0.057513507 KPEESLGK(ac)GAAQENGAPECSPR ddPTM_HeLa_A486_30min_R1 2 KPEESLGKGAAQENGAPECSPR 22 2 Q6IE81;Q6IE81-2;Q6IE81-3 Q6IE81 JADE1 Protein Jade-1 0 1 ; KPEESLGK(1)GAAQENGAPECSPR;KPEESLGK(1)GAAQENGAPECSPR 317.85 7.49E-92 194536000 218150 260970 185750 82527 273460 247460 277100 278520 209790 274110 FALSE TRUE FALSE 202858.8115 240289.7868 257677.3746 192127.0267 239160.0969 216930.9012 207766.6491 215107.076 227974.7661 205471.0718 0.987286481 1.16945799 1.254081036 0.935056332 1.163959942 1.055773444 1.011172265 1.046897133 1.109522446 1 17.64857577 -5.260286795 24.99999881 1.051872814 1.140193442 0.193618843 0.084337263 173.9274878 3772520.578 0.022971351 0.037069834 5.49E-06 5.260286795 0.088320628 KPEKPLFSSAS(ph)PQDS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 2 0 KPEKPLFS(0.003)S(0.018)AS(0.98)PQDS(0.729)S(0.271)PR 110.94 6.64E-05 650830000 401270 357200 261030 497120 567890 451280 534740 554820 388920 685550 TRUE FALSE FALSE 490531.1271 398971.4328 357595.8594 524276.4068 511348.8776 474908.323 420488.4306 418749.5251 466972.6766 514655.0016 0.953126124 0.775221132 0.694826356 1.018694864 0.993576038 0.922770247 0.817029717 0.813650939 0.907350896 1 18.97324612 -11.82418833 1.313659448 2.521326308 0.874248449 0.125499317 0.096809027 578892.3829 18614.34667 2610218.529 0.029211484 1.50E-12 11.82418833 -1.64707786 KPEKPLFSSAS(ph)PQDS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 2 0 KPEKPLFSSAS(1)PQDS(0.945)S(0.055)PR 171.29 1.52E-12 541630000 1509700 1407700 760980 540130 1453100 1516900 1659600 1753600 1163700 1698000 TRUE FALSE FALSE 1403877.826 1296148.725 1055651.836 1257449.937 1270838.648 1329760.301 1244350.527 1354343.561 1264570.453 1272809.748 1.102975388 1.01833658 0.829386982 0.987932359 0.998451379 1.044743963 0.977640632 1.064058131 0.993526688 1 20.27958536 -5.887412327 3.603452946 1.017805346 0.976070157 0.039478846 0.067057447 0.722770606 18.09486161 0.022712107 0.026207006 1.30E-06 5.887412327 -0.041735189 KPEKPLFSSAS(ph)PQDSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 2 0 KPEKPLFSS(0.004)AS(0.995)PQDS(0.29)S(0.71)PR 115.01 4.69E-05 630040000 218280 178780 141080 290670 265150 248360 285900 285200 201030 347970 TRUE FALSE FALSE 266835.6329 199686.7658 193271.3628 306548.5661 238750.735 261363.7456 224815.1294 215254.2528 241374.877 261227.4829 1.021468453 0.764417142 0.739858459 1.173492784 0.913957185 1.000521624 0.860610556 0.824010745 0.924002614 1 17.99494716 KPEKPLFSSASPQDS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 KPEKPLFS(0.001)S(0.006)AS(0.019)PQDS(0.487)S(0.487)PR;KPEKPLFSSASPQDS(0.839)S(0.161)PR ; 199.75 1.65E-25 3408160000 1520240 1435140 867780 485251 1429090 1442320 1566330 1542030 1165860 1613580 TRUE FALSE FALSE 1413679.027 1321414.28 1203807.656 1129688.851 1249840.206 1264381.223 1174417.667 1190943.431 1266917.684 1209529.065 1.168784668 1.092503122 0.995269721 0.933990661 1.033327964 1.045350012 0.970971017 0.984633991 1.047447077 1 20.20601401 -4.554356076 2.867529593 0.999977348 1.163901957 0.724927555 0.033380813 0.145502004 2.252430451 0.009233629 0.040315386 2.79E-05 4.554356076 0.163924609 KPEKPLFSSASPQDSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 KPEKPLFSSASPQDS(0.25)S(0.75)PR;KPEKPLFS(0.006)S(0.026)AS(0.006)PQDS(0.163)S(0.8)PR ; 211.71 3.91E-26 3851730000 1480760 1534610 1238550 1596800 1845490 1667580 1962200 1841130 1475310 2116290 TRUE FALSE FALSE 1810149.953 1714069.29 1696741.185 1684029.141 1661746.536 1754891.91 1542959.94 1389589.981 1771391.185 1588737.85 1.139363522 1.078887426 1.067980589 1.059979241 1.045953891 1.104582427 0.971185989 0.874650264 1.114967573 1 20.59944966 -6.767358989 24.99671816 0.979755123 1.079229204 0.359938859 0.05972948 148.5957907 627466.7613 0.023765004 0.016490268 1.71E-07 6.767358989 0.099474081 KPEKPLFSSASPQDSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KPEKPLFSSASPQDSSPR 18 2 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 KPEKPLFSSASPQDS(0.249)S(0.751)PR 185.45 3.26E-18 3314400000 1329500 1391500 811130 504780 1308000 1335600 1356800 1455900 1200300 1589800 TRUE FALSE FALSE 1236308.916 1281232.472 1125221.259 1175153.35 1143938.443 1170827.251 1017314.289 1124423.352 1304342.97 1191703.732 1.037429759 1.075126676 0.944212247 0.986112 0.959918487 0.98248182 0.85366376 0.943542696 1.094519498 1 20.18459418 -4.760714002 25 0.964966792 1.056278238 0.259836353 0.05725317 23.3233222 803682.8019 0.015012807 0.035231483 1.73E-05 4.760714002 0.091311446 KPEMFETAIKESTSSKS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 KPEMFETAIKESTSSKSPPR 20 3 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 KPEMFETAIKES(0.02)T(0.02)S(0.003)S(0.02)KS(0.938)PPR;KPEMFETAIKESTSS(0.001)KS(0.999)PPR ; 156.51 2.85E-09 2130410000 585810 1403830 486610 231300 1390160 2659000 3672500 8304300 698520 517730 TRUE FALSE FALSE 716121.4135 1567995.707 666627.2885 243935.3333 1251750.789 2798221.128 2887840.373 6267657.404 838706.5568 388669.4391 1.842494782 4.034265494 1.715152316 0.627616449 3.220605129 7.199488426 7.430068029 16.12593318 2.1578917 1 18.56818415 -1.63593341 17.25474738 4.872602091 2.91347086 0 4.48956609 0 0 1.097755783 0 0.023124193 1.63593341 -1.959131231 KPES(ph)PYGNLCDAPDSPRPVK ddPTM_HeLa_A485_30min_R1 1 KPESPYGNLCDAPDSPRPVK 20 2 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 KPES(0.781)PYGNLCDAPDS(0.219)PRPVK 164.48 1.06E-13 413080000 440820 347940 271430 508870 496630 460910 606490 580860 379220 686310 TRUE FALSE FALSE 538878.8882 388628.5563 371843.2521 536668.2796 447183.7734 485042.5349 476908.4569 438403.1742 455325.9756 515225.5476 1.045908711 0.754288211 0.721709655 1.041618146 0.867937888 0.941417865 0.925630453 0.850895644 0.883741068 1 18.97484461 -5.25767442 24.99936462 0.921650208 0.832000806 0.145966595 0.097070033 641.516427 4259659.514 0.02635282 0.043478277 5.52E-06 5.25767442 -0.089649403 KPES(ph)PYGNLCDAPDSPRPVK ddPTM_HeLa_A486_30min_R1 2 KPESPYGNLCDAPDSPRPVK 20 2 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 KPES(0.965)PYGNLCDAPDS(0.035)PRPVK;KPES(0.979)PYGNLCDAPDS(0.021)PRPVK ; 162.61 1.21E-13 763230000 875990 862630 409580 377380 853130 893270 1084680 1048630 633610 1184460 TRUE FALSE FALSE 814587.6246 794272.0572 568180.3449 878559.7117 746122.4803 783067.4295 813281.5914 809879.8404 688531.825 887863.5065 0.917469429 0.894588021 0.639941095 0.989521143 0.840357189 0.881968257 0.915998445 0.912167056 0.775492877 1 19.75997838 KPEVLRPET(ph)PRPVDIGSGGFGDVGALESLR ddPTM_HeLa_A485_30min_R1 1 KPEVLRPETPRPVDIGSGGFGDVGALESLR 30 3 H0Y3S8;Q5JRU8;Q5JRU2;F8VVS7;P55211-3;P55211-4;P55211 H0Y3S8 CASP9 Caspase;Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10 1 0 KPEVLRPET(1)PRPVDIGSGGFGDVGALESLR 216.53 6.05E-39 340130000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 KPEVLRPET(ph)PRPVDIGSGGFGDVGALESLR ddPTM_HeLa_A486_30min_R1 2 KPEVLRPETPRPVDIGSGGFGDVGALESLR 30 3 H0Y3S8;Q5JRU8;Q5JRU2;F8VVS7;P55211-3;P55211-4;P55211 H0Y3S8 CASP9 Caspase;Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10 1 0 KPEVLRPET(1)PRPVDIGSGGFGDVGALESLR;KPEVLRPET(0.999)PRPVDIGS(0.001)GGFGDVGALESLR ; 220.94 4.52E-39 748060000 340140 375170 305580 143687 445920 347540 383170 374410 322420 431530 TRUE FALSE FALSE 316297.9425 345440.1629 423908.7597 334510.5975 389988.5556 304664.0483 287296.8132 289165.0163 350367.6252 323472.0792 0.977821465 1.067913384 1.310495672 1.034125104 1.205632822 0.941855783 0.888165723 0.893941193 1.083146422 1 18.30328166 -6.278230364 24.17713729 0.950214619 1.12224997 0.378212095 0.100599843 549.2213233 790814.2725 0.035557572 0.031454314 5.27E-07 6.278230364 0.172035351 KPFKLS(ph)GLSFK ddPTM_HeLa_A485_30min_R1 2 KPFKLSGLSFK 11 2 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 KPFKLS(1)GLSFK;KPFKLS(0.993)GLS(0.007)FK ; 119.45 9.07E-05 615510000 691390 365594 315683 973720 524490 498895 779040 582050 705400 1705050 TRUE FALSE FALSE 845187.3202 408347.0381 432467.2784 1026911.858 472269.934 525016.3708 612591.7398 439301.3249 846967.3097 1280012.414 0.66029619 0.319018029 0.337861784 0.802267108 0.368957308 0.410165062 0.478582655 0.343200832 0.661686793 1 20.28772637 -8.046237623 4.914341424 0.999823659 0.463628124 0.555311769 0.14730254 0.172336995 13.27451984 0.139161122 0.036286725 8.99E-09 8.046237623 -0.536195535 KPFKLS(ph)GLSFK ddPTM_HeLa_A486_30min_R1 2 KPFKLSGLSFK 11 2 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 KPFKLS(0.985)GLS(0.015)FK;KPFKLS(0.99)GLS(0.01)FK ; 84.566 0.0029965 515590000 1034870 916420 315480 390610 526970 1147600 1198450 1420730 806670 1529350 TRUE FALSE FALSE 962330.9571 843799.5417 437642.3048 909359.8203 460872.5088 1006020.78 898585.1341 1097260.793 876592.8051 1146390.806 0.839444064 0.736048769 0.381756642 0.793237189 0.402020416 0.877554823 0.783838399 0.957143749 0.764654427 1 20.12866751 -6.319227619 24.99914241 0.868159992 0.631586651 0.387747768 0.154458847 298.7513234 129238.6019 0.052760803 0.046530667 4.79E-07 6.319227619 -0.236573341 KPFSQHVR ddPTM_HeLa_A485_30min_R1 2 KPFSQHVR 8 1 Q02878;F8VR69;F8VZ45;U3KQR5 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 173.37 2.45E-05 347411600 230742 440714 420979 115409.7 469591 345716 390868 425838 350590 267330 FALSE FALSE TRUE 282069.7618 492251.6686 576716.6505 121714.2397 422836.8712 363817.1552 307355.8587 321400.5628 420950.1972 200689.5508 1.40550298 2.452801686 2.873675526 0.606480204 2.106920213 1.812835564 1.531499061 1.6014813 2.097519255 1 17.61460598 -11.09482851 0.159415633 4.78E-11 2.136422404 0.143922829 0.590077486 86.97058401 1.942428733 37.47558378 3.071567957 8.04E-12 11.09482851 2.136422404 KPFSQHVR ddPTM_HeLa_A486_30min_R1 2 KPFSQHVR 8 1 Q02878;F8VR69;F8VZ45;U3KQR5 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 69.423 0.024589 7512000 6344.6 6586 6276.3 1159.29 8353.1 3853.6 4509.2 4855.1 5831.3 3676.8 FALSE FALSE TRUE 5899.876304 6064.101374 8706.651445 2698.885707 7305.376308 3378.182013 3380.950467 3749.699716 6336.761779 2756.105348 2.140657035 2.200242955 3.159041599 0.97923895 2.650615773 1.225708595 1.226713075 1.360506672 2.299172557 1 11.42841532 -5.707369371 1.138104377 1.475955768 2.394094676 0.25752549 0.624658543 0.68933823 1.883861691 0.25445784 0.401426681 1.96E-06 5.707369371 0.918138909 KPGDGEVS(ph)PSTEDAPFQHSPLGK ddPTM_HeLa_A485_30min_R1 2 KPGDGEVSPSTEDAPFQHSPLGK 23 1 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 KPGDGEVS(0.982)PS(0.009)T(0.009)EDAPFQHSPLGK;KPGDGEVS(0.887)PS(0.087)T(0.026)EDAPFQHSPLGK ; 107.2 0.00020216 1136020000 896300 718424 438445 1304460 906800 907080 1387710 1437200 730760 1565880 TRUE FALSE FALSE 1095678.843 802437.4373 600644.0507 1375719.347 816515.808 954573.3062 1091214.422 1084724.447 877416.8291 1175534.934 0.932068296 0.682614709 0.510953808 1.170292185 0.694590849 0.812033125 0.928270518 0.922749648 0.74639792 1 20.16488598 -13.99999997 0.065845594 1.63907608 0.576238874 0.091162797 0.170945977 810.4510091 3.858244535 80.27211357 11.26024963 1.00E-14 13.99999997 -1.062837206 KPGDGEVS(ph)PSTEDAPFQHSPLGK ddPTM_HeLa_A486_30min_R1 1 KPGDGEVSPSTEDAPFQHSPLGK 23 1 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 KPGDGEVS(0.586)PS(0.207)T(0.207)EDAPFQHSPLGK 92.924 0.0014545 940150000 211470 196710 119810 91781 238990 257140 280200 304610 187320 303570 TRUE FALSE FALSE 196647.045 181121.9832 166203.6406 213670.8064 209013.6457 225416.6812 210090.9963 235256.9526 203557.0484 227554.0961 0.864177127 0.79595132 0.730391777 0.938989058 0.918522889 0.990607003 0.92325737 1.033850661 0.894543548 1 17.79585003 -5.365239379 5.860983159 0.958474002 0.797404952 0.688723392 0.049469964 0.124201617 5.851848711 0.013602895 0.020339469 4.31E-06 5.365239379 -0.16106905 KPGDGEVSPSTEDAPFQHS(ph)PLGK ddPTM_HeLa_A486_30min_R1 1 KPGDGEVSPSTEDAPFQHSPLGK 23 1 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 KPGDGEVSPSTEDAPFQHS(1)PLGK 122.09 1.40E-05 642000000 386500 385200 161800 134920 363260 411320 464860 459390 267530 431880 TRUE FALSE FALSE 359408.3459 354675.3491 224453.2932 314100.5785 317696.5435 360575.5204 348547.1112 354796.9254 290719.7158 323734.4369 1.110194977 1.09557498 0.693325354 0.970241478 0.98134924 1.113800323 1.076645149 1.095950523 0.898019125 1 18.30445131 -6.047781011 9.54412108 1.04568982 0.959233424 0.068728865 0.120093591 1.3410532 261.5434659 0.041368757 0.04157996 8.96E-07 6.047781011 -0.086456396 KPGGFDISLFYR ddPTM_HeLa_A485_30min_R1 2 KPGGFDISLFYR 12 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 184.21 1.77E-09 190766000 234666 312880 286670 210617 346220 278810 350530 387670 243360 317370 FALSE FALSE TRUE 286866.6421 349468.5943 392721.1623 222122.4734 311749.1211 293408.0605 275636.4019 292593.3247 292200.1198 238255.4998 1.204029466 1.466780807 1.6483194 0.932286867 1.308465582 1.231484943 1.156894184 1.228065354 1.226415004 1 17.86214999 -1.000003163 0.053785609 0.56965213 2.565173961 0.23704743 0.171104222 613.1375772 2.485663754 20.52837095 99.09419119 0.099999272 1.000003163 1.995521832 KPGGFDISLFYR ddPTM_HeLa_A486_30min_R1 2 KPGGFDISLFYR 12 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 174.39 1.40E-07 191683000 306690 302550 246520 111579 322070 281190 332540 314200 257230 319170 FALSE FALSE TRUE 285192.6147 278574.8361 341979.146 259761.5509 281672.9774 246499.6367 249334.9748 242663.5189 279526.9035 239247.7546 1.192038836 1.164378059 1.429393336 1.0857429 1.17732757 1.030311182 1.042162236 1.014277101 1.16835748 1 17.86814586 -5.765560781 1.736872975 1.055444243 1.245650182 0.451303118 0.090200346 0.323272667 2.017026115 0.031541526 0.041812837 1.72E-06 5.765560781 0.190205939 KPGILGDS(ph)PLGALQPGAQPANPLLGELPAGGGLPPELPPRR ddPTM_HeLa_A486_30min_R1 1 KPGILGDSPLGALQPGAQPANPLLGELPAGGGLPPELPPRR 41 2 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 KPGILGDS(1)PLGALQPGAQPANPLLGELPAGGGLPPELPPRR 125.05 4.64E-08 67179000 16579 19148 17608 8546.5 20052 19433 31692 22940 12923 26613 TRUE FALSE FALSE 15416.89771 17630.64274 24426.28916 19896.68392 17536.89118 17035.55404 23762.3264 17717.06278 14043.17605 19948.93158 0.772818216 0.883788822 1.224440971 0.997380929 0.879089244 0.853958217 1.191157847 0.888120885 0.703956299 1 14.28402386 -7.514649822 24.88671234 0.833331614 0.975922844 0.09721819 0.150683915 773.8112616 2340275.587 0.094564855 0.039402883 3.06E-08 7.514649822 0.142591231 KPGINVASDWSIHLR ddPTM_HeLa_A485_30min_R1 2 KPGINVASDWSIHLR 15 1 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 164.15 2.30E-08 27824000 62424 94114 89602 46064 96449 80579 89939 107431 64666 92821 FALSE FALSE TRUE 76310.00344 105119.8136 122749.5085 48580.35968 86846.19891 84797.99184 70722.79792 81083.3788 77643.87305 69682.43294 1.095111066 1.508555445 1.761556009 0.697167961 1.246314103 1.216920654 1.01493009 1.163612913 1.114253188 1 16.08850738 -5.253460198 24.99708614 1.0833906 1.46042227 0.419632377 0.209528515 612.9040104 1920094.667 0.056733684 0.096072332 5.58E-06 5.253460198 0.37703167 KPGINVASDWSIHLR ddPTM_HeLa_A486_30min_R1 1 KPGINVASDWSIHLR 15 1 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 126.88 1.75E-05 11440000 24932 19581 18632 4520.3 23397 17650 19532 18890 21163 18599 FALSE FALSE TRUE 23184.39555 18029.33025 25846.80938 10523.48684 20462.33009 15472.52245 14644.88701 14589.15937 22997.42588 13941.68934 1.662954537 1.293195524 1.853922344 0.754821499 1.46770808 1.109802555 1.050438484 1.046441289 1.649543704 1 13.76711777 -5.250337335 24.99974119 1.162944042 1.572341246 0.369533479 0.267815371 834.2438351 1878558.656 0.06920952 0.118469139 5.62E-06 5.250337335 0.409397204 KPGIVS(ph)PFKR ddPTM_HeLa_A486_30min_R1 1 KPGIVSPFKR 10 2 Q9BSQ5-3;Q9BSQ5;A0A3B3IRS0;E9PEC4 Q9BSQ5-3 CCM2 Cerebral cavernous malformations 2 protein 1 0 KPGIVS(1)PFKR 122.64 6.40E-05 252460000 488040 237380 125850 119580 227960 261730 289320 295110 173050 345810 TRUE FALSE FALSE 453830.9162 218569.1443 174582.4904 278388.2832 199367.1312 229440.4137 216929.0759 227919.8952 188050.1133 259216.9252 1.750776559 0.843190097 0.673499581 1.073958744 0.769113093 0.885128984 0.836863086 0.87926317 0.72545461 1 17.98380039 -4.261203563 24.91700738 0.849288757 1.750776836 0.849447417 0.113238655 6.084618408 642523.53 0.026297346 0.148501789 5.48E-05 4.261203563 0.901488078 KPGPPLS(ph)PEIR ddPTM_HeLa_A485_30min_R1 5 KPGPPLSPEIR 11 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR ;;;; 128.06 3.02E-05 8169820000 3759810 4594510 4049610 3781400 4397400 4225920 4943930 4563110 3936920 4785990 TRUE FALSE FALSE 4596166.763 5131797.978 5547729.257 3987968.307 3959579.416 4447182.637 3887618.967 3444000.118 4727023.732 3592930.773 1.279224971 1.428304162 1.544067951 1.109948552 1.102047233 1.237759066 1.08201889 0.958548977 1.315645647 1 21.77672971 -5.27610696 24.72021379 1.11659495 1.418309536 0.596522982 0.113835738 441.8349381 744651.618 0.031467853 0.046911808 5.30E-06 5.27610696 0.301714586 KPGPPLS(ph)PEIR ddPTM_HeLa_A486_30min_R1 5 KPGPPLSPEIR 11 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR;KPGPPLS(1)PEIR ;;;; 138.73 6.65E-06 7140650000 4057720 4311780 2965570 1159212 3807730 3529000 3955330 3964390 3373690 4344250 TRUE FALSE FALSE 3773294.782 3970098.85 4113918.125 2698704.119 3330128.998 3093627.86 2965664.599 3061784.939 3666124.166 3256421.524 1.15872431 1.219159995 1.263324817 0.828733043 1.0226345 0.950008418 0.910712749 0.940229917 1.125813762 1 21.63485603 -5.248763151 24.9967029 0.964915947 1.214278753 0.684448685 0.076342319 425.4075318 838874.7316 0.020324658 0.034907318 5.64E-06 5.248763151 0.249362807 KPGPPLS(ph)PEIRS(ph)PAGS(ph)PELR ddPTM_HeLa_A485_30min_R1 6 KPGPPLSPEIRSPAGSPELR 20 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 3 0 KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR ;;;;; 119.8 7.32E-06 4431110000 2694140 3233550 3244880 2934200 4340600 3553510 4128340 3946940 3446490 3965760 TRUE FALSE FALSE 3293442.148 3611685.544 4445296.143 3094487.916 3908434.623 3739566.289 3246286.434 2978946.776 4138168.93 2977169.016 1.106232844 1.213127479 1.493128579 1.039406194 1.312802398 1.256081287 1.090393732 1.000597131 1.389967754 1 21.5055097 -6.75692661 24.9466645 1.120289408 1.241854603 0.123181363 0.151985007 235.8008317 1303518.807 0.057854911 0.043270944 1.75E-07 6.75692661 0.121565195 KPGPPLS(ph)PEIRS(ph)PAGS(ph)PELR ddPTM_HeLa_A486_30min_R1 5 KPGPPLSPEIRSPAGSPELR 20 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 3 0 KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR;KPGPPLS(1)PEIRS(1)PAGS(1)PELR ;;;; 102.53 0.00011466 3712960000 1841510 2017680 1547130 819115 2494500 2033570 2369830 2467450 1736300 2244050 TRUE FALSE FALSE 1712429.659 1857791.689 2146220.17 1906941.116 2181616.55 1782688.809 1776873.468 1905665.499 1886803.882 1682125.274 1.018015534 1.104431232 1.275897939 1.133649881 1.296940593 1.059783618 1.05632648 1.132891544 1.121678576 1 20.68185372 KPGPSGPSES(ph)PK ddPTM_HeLa_A485_30min_R1 4 KPGPSGPSESPK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPGPS(0.004)GPS(0.104)ES(0.892)PK;KPGPSGPS(0.003)ES(0.997)PK;KPGPS(0.001)GPS(0.117)ES(0.882)PK;KPGPSGPSES(1)PK ;;; 123.4 2.78E-05 7855190000 4664960 4034210 2793020 8520230 5224420 5089990 8398810 7346620 3681160 11217890 TRUE FALSE FALSE 5702664.258 4505975.767 3826274.325 8985668.591 4704258.401 5356494.006 6604335.632 5544849.926 4419935.046 8421476.473 0.677157299 0.535057692 0.454347208 1.066994442 0.55860257 0.63605165 0.784225385 0.65841779 0.524840871 1 23.00564176 -11.05365862 2.610096755 1.47191216 0.658258279 0.285094384 0.163790377 20742602.68 8117283.461 58377690.98 0.040636215 8.84E-12 11.05365862 -0.813653881 KPGPSGPSES(ph)PK ddPTM_HeLa_A486_30min_R1 2 KPGPSGPSESPK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPGPS(0.002)GPS(0.152)ES(0.845)PK;KPGPSGPSES(1)PK ; 128.26 2.03E-05 2911460000 4383180 3800630 1455140 3595100 3170150 4699330 6475180 5590190 2713640 8992930 TRUE FALSE FALSE 4075941.717 3499454.237 2018609.178 8369574.486 2772520.227 4119574.444 4855021.477 4317425.77 2948860.5 6741041.794 0.604645668 0.519126619 0.299450625 1.24158472 0.411289577 0.611118366 0.720218273 0.640468625 0.437448779 1 22.68454014 -10.78971524 2.554987781 1.111742168 0.614685604 0.189444811 0.24211679 34919616.68 24219475.31 24279184.05 0.059246462 1.62E-11 10.78971524 -0.497056565 KPIDSLRDS(ph)R ddPTM_HeLa_A485_30min_R1 9 KPIDSLRDSR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 KPIDSLRDS(1)R;KPIDS(0.007)LRDS(0.993)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDS(0.013)LRDS(0.987)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R ;;;;;;;; 151.99 2.26E-06 61951520000 24798410 31933340 25156670 25197570 26445800 29343730 31725400 32847150 25519560 29625880 TRUE FALSE FALSE 30314730.75 35667666.33 34463169.09 26574049.45 23812763.3 30880122.33 24947009.12 24791334.96 30641101.61 22240693.34 1.363029933 1.603711979 1.549554619 1.194839074 1.070684395 1.388451424 1.121683067 1.114683548 1.377704424 1 24.40669843 -5.26605992 24.01021617 1.187484989 1.51526017 0.568443755 0.129314287 152.2650932 791234.158 0.03473479 0.053578519 5.42E-06 5.26605992 0.327775181 KPIDSLRDS(ph)R ddPTM_HeLa_A486_30min_R1 9 KPIDSLRDSR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 KPIDS(0.01)LRDS(0.99)R;KPIDSLRDS(1)R;KPIDS(0.007)LRDS(0.993)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDSLRDS(1)R ;;;;;;;; 162.72 3.75E-07 48694620000 19559950 19485190 11734690 4969453 14456860 15968580 16907340 15628400 14639430 21038580 TRUE FALSE FALSE 18188898.51 17941112.58 16278676.23 11569137.73 12643545.81 13998538.96 12676944.7 12070154.49 15908387.58 15770382.63 1.153358098 1.137645991 1.032230899 0.733599051 0.80172727 0.887647388 0.803845094 0.765368525 1.008750894 1 23.91071433 -5.044194542 4.211503434 0.844712651 1.137265217 0.645290168 0.08719426 0.118440166 4.528345056 0.02324689 0.04486436 9.03E-06 5.044194542 0.292552566 KPIETGS(ph)PK ddPTM_HeLa_A485_30min_R1 7 KPIETGSPK 9 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 KPIET(0.101)GS(0.899)PK;KPIET(0.002)GS(0.998)PK;KPIET(0.037)GS(0.963)PK;KPIETGS(1)PK;KPIET(0.001)GS(0.999)PK;KPIETGS(1)PK;KPIET(0.022)GS(0.978)PK ;;;;;; 136.61 0.00044696 55770590000 16992940 14166360 8780850 31389980 18100130 16745720 30619360 27634070 12851040 39281790 TRUE FALSE FALSE 20772960.88 15822992.57 12029251.82 33104735.12 16298017.5 17622500.01 24077283.6 20856771 15430125.85 29489562.68 0.704417393 0.536562469 0.407915572 1.122591592 0.552670709 0.597584311 0.816467977 0.70725942 0.52324024 1 24.81370109 -11.000611 2.938217683 1.335279271 0.666093562 0.222954471 0.188564517 126522127.5 124229230.8 286940965.9 0.047903229 9.99E-12 11.000611 -0.669185709 KPIETGS(ph)PK ddPTM_HeLa_A486_30min_R1 9 KPIETGSPK 9 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 KPIET(0.005)GS(0.995)PK;KPIET(0.007)GS(0.993)PK;KPIET(0.001)GS(0.999)PK;KPIET(0.021)GS(0.979)PK;KPIET(0.017)GS(0.983)PK;KPIET(0.005)GS(0.995)PK;KPIET(0.005)GS(0.995)PK;KPIETGS(1)PK;KPIET(0.002)GS(0.998)PK ;;;;;;;; 142.76 0.00030756 97095680000 31673760 25800880 11335260 25037290 21595110 33029080 47388960 39648350 19935080 62305380 TRUE FALSE FALSE 29453592.99 23756324.3 15724576.24 58288076.43 18886449.94 28954287.92 35531740.98 30621286.22 21663068.79 46703707.31 0.630647858 0.508660354 0.336687966 1.248039605 0.404388667 0.61995695 0.760790589 0.655650011 0.463840454 1 25.47703374 -11.09936423 2.339684395 1.631969628 0.630004749 0.178810947 0.240645689 17601048.76 5098324.594 59191710.1 0.058756899 7.95E-12 11.09936423 -1.001964878 KPLAAPGDGEGLGQTAQPS(ph)PPAR ddPTM_HeLa_A485_30min_R1 2 KPLAAPGDGEGLGQTAQPSPPAR 23 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 KPLAAPGDGEGLGQT(0.001)AQPS(0.999)PPAR;KPLAAPGDGEGLGQTAQPS(1)PPAR ; 149.84 8.13E-10 591840000 202306 241700 213654 220910 276090 245560 269880 277470 235590 293550 TRUE FALSE FALSE 247308.2718 269964.7125 292693.5055 232977.7539 248601.5102 258417.1419 212217.9333 209420.0474 282870.752 220373.3874 1.122223852 1.225033184 1.328170833 1.057195502 1.128092249 1.172633161 0.962992564 0.950296449 1.283597604 1 17.74959049 -5.283586559 24.71123616 1.078268199 1.225131689 0.287044924 0.105351633 858.3076744 957675.259 0.029938714 0.04444431 5.20E-06 5.283586559 0.146863491 KPLAAPGDGEGLGQTAQPS(ph)PPAR ddPTM_HeLa_A486_30min_R1 2 KPLAAPGDGEGLGQTAQPSPPAR 23 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 KPLAAPGDGEGLGQTAQPS(1)PPAR;KPLAAPGDGEGLGQT(0.019)AQPS(0.981)PPAR ; 155.14 3.86E-10 475440000 360950 375220 264598 115980 366070 349340 361730 365430 283338 357380 TRUE FALSE FALSE 335649.2689 345486.2007 367057.4318 270007.3013 320154.0871 306241.9826 271221.328 282229.5663 307897.966 267889.7218 1.252938211 1.28965829 1.370181093 1.007904669 1.195096568 1.143164361 1.012436484 1.053528909 1.149345947 1 18.0312797 -5.259547014 24.99993414 1.087027379 1.302799112 0.693543741 0.06814189 98.58729493 1302421.978 0.018988791 0.030871806 5.50E-06 5.259547014 0.215771733 KPLHLLDCIHVLLIR ddPTM_HeLa_A485_30min_R1 2 KPLHLLDCIHVLLIR 15 1 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 0 ; ; 131.24 1.23E-05 35233000 24027.3 19924.6 16640.1 24280.1 17313.9 17108.1 29233.7 37901.2 10878.3 32858.6 FALSE FALSE TRUE 29372.08999 22254.60865 22795.96544 25606.46038 15590.06732 18003.85366 22987.68118 28605.87127 13061.47503 24667.55574 1.190717488 0.902181346 0.924127452 1.03806233 0.632006977 0.729859653 0.931899432 1.159655686 0.529500173 1 14.59032715 -1.08324251 0.955347798 0.858931226 199.8260835 0.222421261 0.180822997 1753.0346 3.538678335 0.058329903 761536.0474 0.082557682 1.08324251 198.9671522 KPLHLLDCIHVLLIR ddPTM_HeLa_A486_30min_R1 2 KPLHLLDCIHVLLIR 15 1 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 0 ; ; 159.31 3.73E-08 32561000 28628 29328 29757 25311 43423 36546 36960 36207 24004 42547 FALSE FALSE TRUE 26621.32504 27003.94247 41279.70732 58925.28715 37976.48244 32037.32609 27712.21708 27963.45649 26084.68605 31892.95427 0.834708657 0.846705584 1.294320588 1.847595762 1.190748343 1.004526762 0.868913455 0.876791039 0.817882402 1 14.96095012 -6.410217665 3.236346876 0.885064353 1.223005948 0.23482807 0.265884614 0.420544301 8.304491893 0.114709223 0.097874073 3.89E-07 6.410217665 0.337941595 KPLLS(ph)PIPELPEVPEMTPSIPSIR ddPTM_HeLa_A485_30min_R1 2 KPLLSPIPELPEVPEMTPSIPSIR 24 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 KPLLS(1)PIPELPEVPEMTPSIPSIR;KPLLS(1)PIPELPEVPEMTPSIPSIR ; 145.29 2.01E-09 383590000 127058 141647 124607 138270 185835 129152 165998 175865 130321 178025 TRUE FALSE FALSE 155321.6138 158211.3845 170704.3146 145823.34 167332.6149 135914.199 130531.1712 132733.833 156475.2293 133646.6438 1.162181177 1.183803648 1.277280968 1.091111126 1.252052503 1.016966795 0.976688733 0.993169968 1.17081301 1 17.02806408 -6.272313324 24.92362294 1.027673378 1.191749111 0.580668614 0.068685457 501.31845 1149043.391 0.023624616 0.021036016 5.34E-07 6.272313324 0.164075733 KPLLS(ph)PIPELPEVPEMTPSIPSIR ddPTM_HeLa_A486_30min_R1 2 KPLLSPIPELPEVPEMTPSIPSIR 24 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 KPLLS(1)PIPELPEVPEMTPSIPSIR;KPLLS(1)PIPELPEVPEMTPSIPSIR ; 166.2 2.82E-14 289100000 139976 133268 105679 50343 157355 127778 132785 140120 105796 150021 TRUE FALSE FALSE 130164.4052 122707.3583 146600.739 117201.0482 137618.0686 112014.0495 99560.78854 108217.7348 114966.4825 112454.7651 1.157482345 1.09117082 1.303641858 1.042206153 1.223763782 0.996080952 0.885340772 0.962322358 1.022335357 1 16.77898527 -6.36821337 5.418117742 0.961761721 1.160151579 0.62426912 0.073915668 0.146967162 6.217478008 0.0254099 0.022298609 4.28E-07 6.36821337 0.198389857 KPLS(ph)PVRDNIQLTPEAEEDIFNKPECGR ddPTM_HeLa_A485_30min_R1 1 KPLSPVRDNIQLTPEAEEDIFNKPECGR 28 3 Q9UQ84;H0YAZ2 Q9UQ84 EXO1 Exonuclease 1 1 0 KPLS(1)PVRDNIQLTPEAEEDIFNKPECGR 196.75 3.57E-22 714640000 106360 89551 65513 138100 126470 131480 186510 191890 90671 216540 TRUE FALSE FALSE 130019.4151 100023.2105 89748.98492 145644.0533 113878.2027 138364.0895 146660.6149 144828.6766 108867.838 162560.5631 0.799821387 0.61529813 0.552095682 0.895937185 0.700527856 0.851154098 0.902190618 0.890921352 0.669706329 1 17.31061778 -5.269126694 24.95470275 0.836504428 0.651694371 0.387646282 0.108282498 577.3297856 1874138.046 0.029827102 0.045205668 5.38E-06 5.269126694 -0.184810058 KPLS(ph)PVRDNIQLTPEAEEDIFNKPECGR ddPTM_HeLa_A486_30min_R1 1 KPLSPVRDNIQLTPEAEEDIFNKPECGR 28 3 Q9UQ84;H0YAZ2 Q9UQ84 EXO1 Exonuclease 1 1 0 KPLS(1)PVRDNIQLTPEAEEDIFNKPECGR 189.43 1.43E-20 435850000 193610 210950 99975 101740 190860 243210 294370 307950 184530 324470 TRUE FALSE FALSE 180038.9388 194233.5537 138687.9974 236855.8617 166920.5591 213205.223 220715.5125 237836.5075 200525.209 243220.6001 0.740228989 0.798590061 0.570214848 0.973831417 0.686292851 0.876591962 0.907470471 0.977863337 0.824458162 1 17.8919059 -6.338308137 0.671922717 0.952062939 0.724664043 0.378969046 0.104704996 0.796428133 0.778725301 0.078541854 0.075813061 4.59E-07 6.338308137 -0.227398896 KPLSLAGDEETECQS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 KPLSLAGDEETECQSSPK 18 1 F5H1K3;Q86TN4-2;Q86TN4;Q86TN4-4 F5H1K3 TRPT1 tRNA 2-phosphotransferase 1 1 0 KPLSLAGDEETECQS(0.669)S(0.331)PK 136.64 2.17E-06 305090000 224190 225260 90732 173180 186610 281960 368050 306220 174490 498270 TRUE FALSE FALSE 208475.4387 207409.5772 125865.8603 403171.792 163203.6337 247174.642 275959.9972 236500.3907 189614.9337 373499.9488 0.558167248 0.555313536 0.336990301 1.079442697 0.43695758 0.661779587 0.738848822 0.633200597 0.507670575 1 18.51074852 -11.51814027 2.215208715 6.387929865 0.616695471 0.272577245 0.18999523 6464816.404 369536.8805 176089203.1 0.045735501 3.03E-12 11.51814027 -5.771234394 KPLSLAGDEETECQSS(ph)PK ddPTM_HeLa_A485_30min_R1 4 KPLSLAGDEETECQSSPK 18 1 F5H1K3;Q86TN4-2;Q86TN4;Q86TN4-4 F5H1K3 TRPT1 tRNA 2-phosphotransferase 1 1 0 KPLSLAGDEETECQS(0.02)S(0.98)PK;KPLSLAGDEETECQS(0.202)S(0.798)PK;KPLSLAGDEETECQS(0.005)S(0.995)PK;KPLSLAGDEETECQS(0.047)S(0.953)PK ;;; 213.2 3.09E-26 1617650000 1070570 822810 604134 1936680 1186870 1048410 1747860 1436800 841550 2667810 TRUE FALSE FALSE 1308714.603 919030.472 827628.3067 2042475.924 1068701.055 1103303.126 1374415.432 1084422.547 1010441.366 2002774.064 0.653450944 0.458878756 0.413240975 1.019823434 0.533610393 0.550887465 0.686255857 0.541460251 0.504520896 1 20.93356825 -10.38055829 3.266521092 1.003809118 0.596780707 0.360745132 0.161417209 95286563.55 131179941.7 3452555.798 0.039915231 4.16E-11 10.38055829 -0.407028411 KPLSLAGDEETECQSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 KPLSLAGDEETECQSSPK 18 1 F5H1K3;Q86TN4-2;Q86TN4;Q86TN4-4 F5H1K3 TRPT1 tRNA 2-phosphotransferase 1 1 0 KPLSLAGDEETECQS(0.137)S(0.863)PK;KPLSLAGDEETECQS(0.001)S(0.999)PK ; 219.16 1.43E-34 1026470000 636350 731460 319720 537660 627260 812170 1089870 1006660 508990 1482540 TRUE FALSE FALSE 591745.1511 673496.4457 443524.1464 1251699.652 548583.2018 711972.7229 817172.9985 777465.4932 553109.663 1111302.334 0.532478996 0.606042501 0.399103046 1.126335843 0.493639926 0.640665192 0.735329148 0.699598542 0.49771304 1 20.08381993 -11.44386515 2.242382969 4.5230078 0.643924497 0.246307793 0.190247653 21125623.72 2083628.658 376879466.7 0.047838515 3.60E-12 11.44386515 -3.879083302 KPLSTHSTEYNLDSVPS(ph)PAEEFADFATFSK ddPTM_HeLa_A486_30min_R1 1 KPLSTHSTEYNLDSVPSPAEEFADFATFSK 30 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9 Q6ULP2-7 AFTPH Aftiphilin 1 0 KPLS(0.056)T(0.056)HS(0.056)T(0.056)EY(0.005)NLDS(0.012)VPS(0.749)PAEEFADFAT(0.008)FSK 64.315 0.0071071 72651000 16515 20222 11684 2201.8 15649 13231 16637 15841 16325 9108.2 TRUE FALSE FALSE 15357.38378 18619.53507 16208.35771 5125.901673 13686.1565 11598.69374 12474.24663 12234.35011 17740.06414 6827.447436 2.249359505 2.727159052 2.373999633 0.750778636 2.004578816 1.698833107 1.827073258 1.791936184 2.598345035 1 12.73713059 -5.028599778 24.7798747 1.710070508 2.503839657 0.344923305 0.493493405 661.5068594 573153.3667 0.129909302 0.225617696 9.36E-06 5.028599778 0.793769149 KPLT(ph)SSSAAPQRPISTQR ddPTM_HeLa_A485_30min_R1 1 KPLTSSSAAPQRPISTQR 18 2 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 1 0 KPLT(0.465)S(0.465)S(0.035)S(0.035)AAPQRPISTQR 45.011 0.0098113 0 82816 115920 95444 78951 138900 111160 135420 126660 98692 99043 TRUE FALSE FALSE 101238.1335 129475.8356 130752.7074 83263.89322 125070.6283 116980.1657 106486.4107 95596.4364 118498.5791 74353.40285 1.361580366 1.74135723 1.75853024 1.119839712 1.682110347 1.573299422 1.432165935 1.285703582 1.593720995 1 16.18211115 -12.08518782 0.22158392 3.68E-10 1.587034236 0.376174014 0.196064078 62.096313 1.327344813 29.28163864 0.388948293 8.22E-13 12.08518782 1.587034235 KPLT(ph)TTPR ddPTM_HeLa_A486_30min_R1 1 KPLTTTPR 8 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 KPLT(0.333)T(0.333)T(0.333)PR 60.518 0.028665 289650000 540080 579460 429250 196060 625570 509040 563960 596570 472060 581030 TRUE FALSE FALSE 502223.181 533541.4792 595467.0957 456437.5883 547105.1774 446239.8203 422851.243 460744.034 512978.5409 435536.3061 1.153114388 1.225021822 1.367204266 1.047989759 1.256164342 1.024575481 0.970874843 1.057877443 1.177808907 1 18.73243346 -6.26676378 24.97829047 1.045135138 1.210483311 0.448643025 0.090716098 430.3406148 2018844.581 0.031786626 0.028860911 5.41E-07 6.26676378 0.165348173 KPLTS(ph)SSAAPQRPISTQR ddPTM_HeLa_A485_30min_R1 1 KPLTSSSAAPQRPISTQR 18 2 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 1 0 KPLT(0.045)S(0.866)S(0.045)S(0.045)AAPQRPISTQR 69.765 0.0030494 715950000 416200 476300 349400 133770 690180 559040 495940 646380 511730 207800 TRUE FALSE FALSE 508782.2541 531999.1417 478657.5997 141077.5164 621463.2558 588310.47 389978.3675 487854.2915 614429.5171 155999.2843 3.261439669 3.410266555 3.068332025 0.904347203 3.983757097 3.771238264 2.4998728 3.127285447 3.938668821 1 17.25117988 KPLTS(ph)SSAAPQRPISTQR ddPTM_HeLa_A486_30min_R1 2 KPLTSSSAAPQRPISTQR 18 2 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 1 0 KPLT(0.005)S(0.789)S(0.194)S(0.012)AAPQRPISTQR;KPLT(0.003)S(0.815)S(0.17)S(0.012)AAPQRPISTQR ; 163.18 2.25E-12 1499800000 306270 259900 198851 93107 290930 257840 282350 260170 225840 326010 TRUE FALSE FALSE 284802.0546 239304.5775 275851.4326 216757.8014 254438.8466 226030.3223 211703.0436 200934.9705 245415.993 244374.974 1.165430526 0.979251572 1.128803936 0.88698854 1.041182092 0.924932364 0.866304107 0.822240376 1.004259925 1 17.89873702 -4.807557237 0.651056382 0.912450418 1.177442107 0.400368416 0.081480898 1.802980946 0.918497042 0.040510612 0.322533393 1.56E-05 4.807557237 0.264991688 KPLTSSSAAPQRPIST(ph)QR ddPTM_HeLa_A486_30min_R1 1 KPLTSSSAAPQRPISTQR 18 2 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 1 0 KPLTSSSAAPQRPIS(0.388)T(0.612)QR 136.64 3.62E-06 607390000 189490 185500 148280 56975 231260 163790 177270 196520 147800 178840 TRUE FALSE FALSE 176207.7295 170800.3044 205697.9871 132640.6794 202253.2144 143583.2551 132915.171 151776.686 160611.423 134057.2999 1.314420995 1.274084324 1.534403476 0.989432723 1.508707206 1.071058832 0.991480293 1.132177704 1.198080396 1 17.03249026 -6.298962374 24.72623402 1.081378028 1.314503726 0.401214486 0.149795301 530.9856653 349897.8285 0.050487155 0.044526636 5.02E-07 6.298962374 0.233125698 KPLTSSSAAPQRPISTQR ddPTM_HeLa_A485_30min_R1 1 KPLTSSSAAPQRPISTQR 18 2 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 0 76.713 0.0077354 8782500 3071.1 5027.1 4692.2 3795.4 4979.2 4006 5574 6972.6 4199.3 4891.1 FALSE FALSE TRUE 3754.2556 5614.975615 6428.040039 4002.733092 4483.453365 4215.747966 4383.069365 5262.558917 5042.060992 3671.838784 1.022445652 1.529199931 1.750632426 1.090116785 1.22103764 1.148129919 1.193698749 1.433221671 1.37317058 1 11.842287 -5.298546567 24.98546257 1.223925598 1.443603944 0.200013572 0.204880694 922.9969841 621481.6533 0.058975332 0.087477184 5.03E-06 5.298546567 0.219678346 KPLTT(ph)TPR ddPTM_HeLa_A486_30min_R1 1 KPLTTTPR 8 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 KPLT(0.166)T(0.693)T(0.141)PR 83.869 0.0053793 273950000 689840 761220 577240 293060 850260 671620 790920 810620 645880 811670 TRUE FALSE FALSE 641485.7783 700898.1549 800762.787 682258.4904 743612.4624 588762.3529 593023.4505 626059.5217 701865.3984 608422.5489 1.054342544 1.151992404 1.316129372 1.121356353 1.222197408 0.967686609 0.974690125 1.028988033 1.15358216 1 19.2147141 -6.258976296 24.99942238 1.023657432 1.177085134 0.464686783 0.079478655 205.7434152 2088231.795 0.027628108 0.026440234 5.51E-07 6.258976296 0.153427702 KPLTTT(ph)PR ddPTM_HeLa_A485_30min_R1 1 KPLTTTPR 8 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 KPLT(0.144)T(0.144)T(0.712)PR 67.334 0.016373 458270000 383760 429030 399050 403890 569780 500450 554530 709680 441130 565620 TRUE FALSE FALSE 469126.088 479201.3264 546675.2009 425953.488 513050.7026 526652.7882 436050.1354 535629.8673 529660.7447 424621.3435 1.104810428 1.128538011 1.287441645 1.003137253 1.208254626 1.240288074 1.026915255 1.261429449 1.24737193 1 18.69581736 KPLVLCGDLNVAHEEIDLR ddPTM_HeLa_A486_30min_R1 1 KPLVLCGDLNVAHEEIDLR 19 1 P27695;H7C4A8;G3V5Q1;G3V3M6 P27695 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 0 109.89 2.51E-05 7248300 8704.6 10423 7541.8 4155.2 10325 8406.9 8908.8 8897.4 8286.4 11046 FALSE FALSE TRUE 8094.452491 9597.04352 10462.18694 9673.515592 9029.942223 7369.742153 6679.724012 6871.656249 9004.671824 8280.009703 0.977589735 1.159061869 1.263547666 1.168297616 1.090571454 0.890064434 0.806729008 0.829909202 1.087519477 1 13.01541674 -6.156471403 3.737799495 0.904750899 1.149856128 0.51758308 0.100735213 0.186606321 4.737940223 0.035748301 0.035663083 6.97E-07 6.156471403 0.245105229 KPMSLAS(ph)GLVPAAPPK ddPTM_HeLa_A486_30min_R1 1 KPMSLASGLVPAAPPK 16 1 E7EVA0;B5MEG9;P27816-4;H7C4C5;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KPMS(0.281)LAS(0.719)GLVPAAPPK 88.019 0.00075685 0 137610 154950 91152 80823 136970 181660 208550 182820 130070 179640 TRUE FALSE FALSE 127964.2496 142671.1977 126448.4955 188160.0286 119789.9454 159248.6362 156368.5842 141195.8769 141344.5723 134656.9747 0.950297969 1.05951584 0.939041559 1.3973285 0.889593321 1.182624491 1.161236427 1.048559699 1.049663952 1 17.03892943 KPNAGGS(ph)PAPVR ddPTM_HeLa_A485_30min_R1 2 KPNAGGSPAPVR 12 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 KPNAGGS(1)PAPVR;KPNAGGS(1)PAPVR ; 94.01 0.0010213 650320000 827470 701980 737200 1029220 929210 740980 864860 762960 819000 1427650 TRUE FALSE FALSE 1011537.847 784070.4546 1009920.957 1085443.682 836694.5897 779776.567 680075.5957 575842.8637 983365.7877 1071763.129 0.943807283 0.731570655 0.942298657 1.012764531 0.780671183 0.727564278 0.634539086 0.53728557 0.917521569 1 20.03155466 -5.96059838 8.980438141 0.729419415 0.897739158 0.174057942 0.141234819 0.445993256 94.52179817 0.043456037 0.049191892 1.09E-06 5.96059838 0.168319743 KPNAGGS(ph)PAPVR ddPTM_HeLa_A486_30min_R1 2 KPNAGGSPAPVR 12 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 KPNAGGS(1)PAPVR;KPNAGGS(1)PAPVR ; 93.152 0.0010767 1125100000 1069330 1472700 1074610 417580 1375340 1297410 1269390 1329610 1352220 1219560 TRUE FALSE FALSE 994375.489 1355997.889 1490727.771 972147.3433 1202832.033 1137348.745 951775.1958 1026886.828 1469431.518 914174.238 1.087730815 1.483303546 1.630682324 1.063415816 1.315757962 1.244126883 1.041131063 1.123294428 1.607386707 1 19.80210964 -5.275965326 24.97453215 1.204568713 1.408845387 0.164786761 0.207159449 1368.385798 2352669.648 0.057860909 0.086251465 5.30E-06 5.275965326 0.204276673 KPNIFYSGPAS(ph)PARPR ddPTM_HeLa_A485_30min_R1 2 KPNIFYSGPASPARPR 16 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 KPNIFYSGPAS(1)PARPR;KPNIFYSGPAS(1)PARPR ; 132.74 5.53E-06 16071200000 1124780 1606110 1517370 1122660 1648990 1595010 1792480 1980580 1365290 1516650 TRUE FALSE FALSE 1374983.431 1793930.593 2078708.306 1183988.073 1484810.766 1678522.257 1409502.005 1494839.65 1639291.18 1138577.067 1.207633168 1.575589958 1.825707162 1.039883999 1.304093336 1.474228057 1.237950461 1.312901597 1.439771824 1 20.11880052 -13.06940745 0.161205519 3.92E-10 1.491663676 0.232054301 0.206445241 144.7738368 1.756484678 48.26689448 0.923972677 8.52E-14 13.06940745 1.491663675 KPNIFYSGPAS(ph)PARPR ddPTM_HeLa_A486_30min_R1 2 KPNIFYSGPASPARPR 16 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 KPNIFYSGPAS(1)PARPR;KPNIFYSGPAS(1)PARPR ; 250.27 1.48E-42 12808300000 2755400 2700400 2209100 1002950 2937600 2341600 3031000 2957500 2313100 3180100 TRUE FALSE FALSE 2562260.689 2486410.469 3064522.682 2334918.286 2569138.816 2052717.2 2272611.741 2284141.812 2513601.37 2383782.261 1.074871951 1.043052677 1.285571561 0.979501494 1.077757335 0.861117743 0.953363811 0.958200692 1.054459298 1 21.18482103 -5.421577986 24.99999999 0.979282566 1.126553423 0.4196836 0.0811094 38.40371413 9469.812252 0.022909124 0.033979726 3.79E-06 5.421577986 0.147270857 KPPAPPS(ph)PVQS(ph)QSPSTNWS(ph)PAVPVK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.983)PVQS(0.757)QS(0.259)PS(0.008)T(0.007)NWS(0.987)PAVPVK 116.94 0.00011259 509320000 437610 428140 251480 161270 395250 438060 479260 454380 351450 499450 TRUE FALSE FALSE 406935.7988 394212.6271 348859.7909 375444.7101 345674.0594 384016.6111 359344.0789 350927.593 381913.969 374384.4691 1.086946261 1.052962021 0.931822283 1.002831958 0.923313032 1.025727942 0.959826351 0.937345488 1.020111678 1 18.51416106 -4.614315743 5.502710639 0.973521281 1.078960806 0.545482424 0.035133871 0.125053104 5.783905527 0.008398527 0.023329727 2.43E-05 4.614315743 0.105439525 KPPAPPS(ph)PVQS(ph)QSPSTNWSPAVPVKK ddPTM_HeLa_A485_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(1)PVQS(0.517)QS(0.222)PS(0.222)T(0.04)NWSPAVPVKK 195.92 1.02E-20 1557000000 612570 576310 385330 665280 697880 835920 997660 1171800 610010 1005700 TRUE FALSE FALSE 748834.0832 643704.4413 527879.6019 701622.5618 628396.6168 879687.4786 784501.7909 884414.2127 732433.4117 754997.4985 0.991836509 0.852591489 0.699180597 0.929304485 0.832316157 1.165152839 1.039078662 1.171413434 0.970113693 1 19.52611234 -6.251068292 24.82067592 1.077985499 0.855375782 0.560158287 0.09196856 454.2886952 1087230.15 0.029925833 0.029601143 5.61E-07 6.251068292 -0.222609717 KPPAPPS(ph)PVQSQS(ph)PS(ph)TNWSPAVPVKK ddPTM_HeLa_A485_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.961)PVQS(0.157)QS(0.852)PS(0.479)T(0.358)NWS(0.193)PAVPVKK 55.101 0.033716 1962500000 816510 677250 388880 899630 879700 958160 1285000 1411000 665770 1237500 TRUE FALSE FALSE 998139.8326 756448.4962 532742.8946 948774.5089 792113.9792 1008327.776 1010449.253 1064950.038 799383.9322 929014.0245 1.074407712 0.814248737 0.573449787 1.021270383 0.85263942 1.085374116 1.087657695 1.146322886 0.86046487 1 19.82534085 -6.003810032 1.849074948 1.046516264 0.837271302 0.227625118 0.14615446 0.46693393 3.221843883 0.055616767 0.06106488 9.91E-07 6.003810032 -0.209244962 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVK ddPTM_HeLa_A485_30min_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.988)PVQS(0.156)QS(0.787)PS(0.036)T(0.039)NWS(0.995)PAVPVK;KPPAPPS(0.999)PVQS(0.191)QS(0.793)PS(0.135)T(0.12)NWS(0.762)PAVPVK ; 95.042 0.0015926 672270000 215190 203645 158556 261130 251890 227790 310840 297370 208580 373660 TRUE FALSE FALSE 263058.2731 227459.5113 217212.4625 275394.8707 226810.9472 239716.7322 244426.4947 224439.5412 250440.0928 280513.4387 0.937774227 0.8108685 0.774338882 0.98175286 0.808556439 0.854564164 0.871353957 0.800102634 0.892791782 1 18.09771036 -8.018920721 23.04435786 1.000000003 0.853508248 0.341774795 0.060684249 508.4210645 619228.9939 0.056215064 0.014514667 9.57E-09 8.018920721 -0.146491755 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.983)PVQS(0.183)QS(0.832)PS(0.002)T(0.002)NWS(0.998)PAVPVK 133.94 2.36E-06 544340000 328560 304890 165540 138130 306410 348040 398780 392270 291740 446900 TRUE FALSE FALSE 305529.6407 280729.406 229641.5213 321573.6207 267977.2006 305102.3634 299001.0261 302958.6842 317028.2581 334993.3312 0.912046934 0.838014909 0.685510725 0.959940365 0.799947867 0.910771454 0.892558145 0.904372284 0.946371849 1 18.35377285 -7.410855865 0.505571833 0.999881105 0.827762352 0.352167257 0.069085339 0.969933918 0.596453109 0.071352649 0.044769325 3.88E-08 7.410855865 -0.172118753 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVKK ddPTM_HeLa_A485_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.997)PVQS(0.347)QS(0.636)PS(0.245)T(0.2)NWS(0.576)PAVPVKK 59.748 0.025832 1787100000 768950 740440 420570 924350 937190 986830 1452800 1453000 668240 1288600 TRUE FALSE FALSE 940000.2747 827028.017 576156.3444 974844.8999 843880.0729 1038498.893 1142397.412 1096649.472 802349.6385 967375.7349 0.971701316 0.854919125 0.59558693 1.007721059 0.872339508 1.073521751 1.180924196 1.133633429 0.829408481 1 19.88371682 -5.933065067 1.77308012 1.057124768 0.826434224 0.302389425 0.135655207 0.408019007 2.620441781 0.051569 0.059808565 1.17E-06 5.933065067 -0.230690544 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVKK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.915)PVQS(0.286)QS(0.713)PS(0.395)T(0.319)NWS(0.371)PAVPVKK 59.222 0.026725 1398600000 504380 485170 221110 189120 404120 492400 582650 581670 313620 604760 TRUE FALSE FALSE 469025.5666 446723.3622 306729.7135 440280.9176 353431.5013 431652.6944 436864.8074 449236.4388 340804.8341 453324.1597 1.034636157 0.985439123 0.676623354 0.97122756 0.779644089 0.95219433 0.96369187 0.990982786 0.751790583 1 18.79018353 KPPAPPS(ph)PVQSQS(ph)PSTNWSPAVPVK ddPTM_HeLa_A485_30min_R1 3 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.999)PVQS(0.141)QS(0.855)PS(0.004)T(0.001)NWSPAVPVK;KPPAPPS(0.998)PVQS(0.071)QS(0.906)PS(0.012)T(0.013)NWSPAVPVK;KPPAPPS(0.949)PVQS(0.125)QS(0.921)PS(0.002)T(0.002)NWSPAVPVK ;; 144.2 2.28E-09 4274450000 1543626 1312444 1038495 1787777 1825204 1610585 2004818 1968303 1527175 2486680 TRUE FALSE FALSE 1887000.278 1465922.909 1422677.516 1885438.731 1643480.281 1694912.74 1576472.256 1485573.603 1833665.014 1866796.44 1.010822732 0.785261252 0.762095687 1.009986247 0.88037466 0.907925848 0.844479999 0.795787677 0.982252256 1 20.83213319 -7.886041948 7.524980653 0.998986703 0.87284676 0.248909893 0.081148286 0.309488321 18.09118908 0.077904006 0.020165144 1.30E-08 7.886041948 -0.126139943 KPPAPPS(ph)PVQSQS(ph)PSTNWSPAVPVK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(1)PVQS(0.054)QS(0.877)PS(0.057)T(0.012)NWSPAVPVK 174.46 1.03E-14 2422900000 1188900 1119400 602740 397690 1084400 1192600 1224400 1302000 906830 1392100 TRUE FALSE FALSE 1105564.249 1030694.667 836137.0699 925842.4181 948384.4404 1045469.137 918042.1696 1005563.022 985434.7545 1043509.099 1.059467762 0.987719866 0.801274345 0.88723943 0.908841563 1.001878315 0.879764413 0.963636085 0.944347065 1 19.99301175 -8.274191179 1.010098684 0.999751789 0.929502745 0.06952222 0.06893245 2.838546357 5.484954625 0.069799943 0.022671921 5.32E-09 8.274191179 -0.070249044 KPPAPPS(ph)PVQSQS(ph)PSTNWSPAVPVKK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(1)PVQS(0.157)QS(0.464)PS(0.317)T(0.061)NWS(0.001)PAVPVKK 165.48 3.63E-13 1201600000 1137700 941130 516490 402720 945360 1152200 1356300 1319600 806900 1451700 TRUE FALSE FALSE 1057953.105 866551.4313 716488.7601 937552.5123 826784.1337 1010053.279 1016939.395 1019155.887 876842.7417 1088184.871 0.972218171 0.796327402 0.658425585 0.861574662 0.759782787 0.928200075 0.93452815 0.936565021 0.80578472 1 20.05349225 -6.272269017 24.03484256 0.917895453 0.803406304 0.291085545 0.086541839 570.7659103 1266729.524 0.030444637 0.027141803 5.34E-07 6.272269017 -0.114489149 KPPAPPS(ph)PVQSQSPS(ph)TNWSPAVPVK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.738)PVQS(0.17)QS(0.157)PS(0.333)T(0.302)NWS(0.3)PAVPVK 54.867 0.014329 351140000 95254 129110 72520 86376 173870 143000 207060 208590 84790 114920 TRUE FALSE FALSE 88577.18649 118878.8534 100601.6862 201087.6932 152061.6033 125358.1139 155251.3979 161098.6105 92139.66547 86143.284 1.028254118 1.380013019 1.167841316 2.334339764 1.765217162 1.455227942 1.802246104 1.870123857 1.06960939 1 16.3944507 -2.79598096 9.366333972 1.538711866 1.435123401 0 0.424752537 0 0 0.09756851 0 0.001599628 2.79598096 -0.103588465 KPPAPPS(ph)PVQSQSPSTNWS(ph)PAVPVK ddPTM_HeLa_A485_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(1)PVQSQSPS(0.005)T(0.003)NWS(0.991)PAVPVK 112.09 0.00013223 339850000 148960 141390 121920 178640 199300 182410 216510 237130 150430 251310 TRUE FALSE FALSE 182095.6381 157924.3306 167023.2815 188398.6509 179456.9922 191960.7055 170250.8698 178973.4957 180619.9212 188663.042 0.96518977 0.837070837 0.885299419 0.998598607 0.951203746 1.017479118 0.902407106 0.948640994 0.957367798 1 17.52545231 -5.246629916 24.54943002 0.964450961 0.88997508 0.372852035 0.042479181 649.6773898 1076958.292 0.011245403 0.0193665 5.67E-06 5.246629916 -0.074475881 KPPAPPS(ph)PVQSQSPSTNWS(ph)PAVPVK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.72)PVQS(0.331)QS(0.29)PS(0.224)T(0.207)NWS(0.227)PAVPVK 53.094 0.015645 348430000 110930 103000 68264 47500 123480 115850 150140 152530 88494 140600 TRUE FALSE FALSE 103154.3798 94837.90488 94697.64897 110582.4005 107991.987 101557.6049 112573.384 117802.2487 96164.73117 105392.8448 0.97876075 0.899851456 0.898520664 1.049240114 1.024661467 0.963610054 1.068131182 1.117744273 0.912440795 1 16.6854174 -5.261301527 24.99972536 1.024234611 0.923125004 0.361048767 0.056832477 12.53243339 2272613.908 0.01562206 0.024943219 5.48E-06 5.261301527 -0.101109607 KPPAPPS(ph)PVQSQSPSTNWS(ph)PAVPVKK ddPTM_HeLa_A485_30min_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(1)PVQSQSPS(0.04)T(0.013)NWS(0.948)PAVPVKK;KPPAPPS(0.998)PVQS(0.004)QSPS(0.007)T(0.006)NWS(0.984)PAVPVKK ; 192.69 7.51E-21 6576800000 2701000 2160300 1476140 2747200 3073500 3047100 4438400 4922800 2356800 4054300 TRUE FALSE FALSE 3301828.132 2412928.293 2022225.613 2897272.58 2767491.548 3206641.444 3490099.582 3715475.581 2829788.142 3043637.624 1.084829582 0.792777785 0.664410769 0.951911146 0.90927104 1.053555594 1.146686962 1.220735199 0.929738849 1 21.53736517 -6.148494805 1.96190249 1.094202529 0.851688971 0.360423215 0.125252909 0.336114482 2.553446828 0.049481906 0.049058532 7.10E-07 6.148494805 -0.242513558 KPPAPPS(ph)PVQSQSPSTNWS(ph)PAVPVKK ddPTM_HeLa_A486_30min_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(1)PVQSQSPS(0.005)T(0.003)NWS(0.992)PAVPVKK;KPPAPPS(1)PVQSQSPS(0.001)T(0.001)NWS(0.998)PAVPVKK ; 204.15 1.49E-28 6029500000 2133040 1936130 888820 749420 1793650 2130660 2561560 2353410 1486910 2633110 TRUE FALSE FALSE 1983524.911 1782704.008 1232994.907 1744687.634 1568673.692 1867800.832 1920630.595 1817589.918 1615796.556 1973762.117 1.004946287 0.903201045 0.624692761 0.883940176 0.794763299 0.946315068 0.973081091 0.920875875 0.818637941 1 20.91251669 -6.27081955 24.57763182 0.929417935 0.835914705 0.163462931 0.100614467 1043.932645 2735271.586 0.036431592 0.03256072 5.36E-07 6.27081955 -0.09350323 KPPAPPS(ph)PVQSQSPSTNWSPAVPVK ddPTM_HeLa_A485_30min_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KPPAPPS(0.9)PVQS(0.095)QS(0.004)PSTNWSPAVPVK;KPPAPPS(1)PVQSQSPSTNWSPAVPVK ; 116.57 0.00010467 1315630000 356090 300960 243426 357120 404620 357650 462130 517240 348420 531280 TRUE FALSE FALSE 435300.992 336154.654 333479.4072 376628.5613 364334.6121 376376.001 363392.1502 390386.079 418344.6981 398841.6735 1.091413012 0.842827308 0.836119767 0.94430594 0.913481806 0.943672705 0.911118808 0.978799621 1.048899165 1 18.60545663 -7.466831733 3.46147145 1.023687966 0.920527741 0.256714213 0.067041735 0.314921318 7.403775103 0.045181416 0.017770087 3.41E-08 7.466831733 -0.103160225 KPPAPPS(ph)PVQSQSPSTNWSPAVPVK ddPTM_HeLa_A486_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KPPAPPS(1)PVQSQSPSTNWSPAVPVK 196.01 1.13E-21 724850000 309730 336390 183650 111340 328730 342090 377410 351670 294760 388660 TRUE FALSE FALSE 288019.5264 309733.2313 254764.1983 259205.1468 287497.6181 299886.4139 282978.0262 271602.4179 320310.0341 291337.0062 0.988612913 1.063144141 0.874465629 0.889708967 0.986821488 1.029345423 0.97130821 0.932261992 1.099448499 1 18.15232944 -5.985174421 24.836261 1.000934984 0.953870946 0.131005949 0.062989098 545.7030047 914172.7266 0.020546347 0.023288351 1.03E-06 5.985174421 -0.047064038 KPPAPPS(ph)PVQSQSPSTNWSPAVPVKK ddPTM_HeLa_A485_30min_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KPPAPPS(1)PVQSQSPSTNWSPAVPVKK;KPPAPPS(0.908)PVQS(0.032)QS(0.011)PS(0.046)T(0.003)NWSPAVPVKK ; 160.43 6.16E-14 5588500000 456690 447330 260040 444270 460270 570310 710410 743930 389680 692650 TRUE FALSE FALSE 558279.1149 499641.3522 356239.6172 468539.3451 414443.9027 600170.5497 558625.1 561480.0011 467885.2016 519985.1023 1.073644442 0.960876283 0.685095814 0.901063017 0.79703034 1.154207202 1.074309817 1.079800169 0.899805013 1 18.98811076 -6.256361526 24.99931297 1.048654787 0.877786934 0.328698155 0.112583464 512.152638 2521434.787 0.039105271 0.037974477 5.54E-07 6.256361526 -0.170867853 KPPAPPS(ph)PVQSQSPSTNWSPAVPVKK ddPTM_HeLa_A486_30min_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KPPAPPS(1)PVQSQSPSTNWSPAVPVKK;KPPAPPS(1)PVQSQSPSTNWSPAVPVKK ; 258.38 2.14E-62 6349200000 2411090 2175310 1029280 736630 2174770 2383120 2499560 2497540 1696450 2687300 TRUE FALSE FALSE 2242085.042 2002930.513 1427844.781 1714911.867 1901990.068 2089114.884 1874143.65 1928904.663 1843499.652 2014382.589 1.113038335 0.994314846 0.708825021 0.851333742 0.944204978 1.037099355 0.93038118 0.957566191 0.915168579 1 20.94190629 -5.990285651 24.48537932 0.966105427 0.906325892 0.049582447 0.101309182 525.9240858 1325599.175 0.03402024 0.038526516 1.02E-06 5.990285651 -0.059779536 KPPAPPSPVQS(ph)QSPS(ph)TNWSPAVPVKK ddPTM_HeLa_A485_30min_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.275)PVQS(0.599)QS(0.189)PS(0.454)T(0.41)NWS(0.073)PAVPVKK 80.79 0.025655 1139300000 89961 80033 55855 121580 90099 103880 158540 143350 79139 173340 TRUE FALSE FALSE 109972.5141 89392.16316 76518.08882 128221.6075 81128.4272 109318.9962 124666.6338 108193.1877 95021.47139 130129.5281 0.845100383 0.68694757 0.588014803 0.985338297 0.623443644 0.840078326 0.958019565 0.831426882 0.730206839 1 16.98958884 -6.502285686 23.84318375 0.870606054 0.74551782 0.206801258 0.124980474 725.6598161 840190.3357 0.043571665 0.037934996 3.15E-07 6.502285686 -0.125088234 KPPATTYEGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 KPPATTYEGSPR 12 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 KPPAT(0.001)T(0.002)YEGS(0.997)PR;KPPATTYEGS(1)PR;KPPATT(0.001)YEGS(0.999)PR;KPPATTYEGS(1)PR ;;; 109.04 0.00026963 1404730000 1542180 1938530 1621810 1501470 1867910 1906520 1970130 1994230 1423590 2093820 TRUE FALSE FALSE 1885232.621 2165224.221 2221785.008 1583491.504 1681934.322 2006342.439 1549195.631 1505141.966 1709291.455 1571869.208 1.19935718 1.377483705 1.413466844 1.007393933 1.070021802 1.27640546 0.985575405 0.957549113 1.087426006 1 20.58404975 -5.264726097 24.99676195 1.060111118 1.334840694 0.622100519 0.098209395 190.3270119 1447513.751 0.028680787 0.044595954 5.44E-06 5.264726097 0.274729577 KPPATTYEGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KPPATTYEGSPR 12 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 KPPATT(0.001)YEGS(0.999)PR;KPPATT(0.001)YEGS(0.998)PR;KPPATT(0.001)YEGS(0.999)PR;KPPATTYEGS(1)PR ;;; 111.22 0.00023175 904100000 996150 1096780 911300 356589 1258670 920870 1043680 994440 929870 1117250 TRUE FALSE FALSE 926325.0291 1009867.158 1264179.765 830157.213 1100795.872 807262.4221 782540.2251 768027.7205 1010471.88 837483.3279 1.106081755 1.205835537 1.509498426 0.991252226 1.314409297 0.963914618 0.934394989 0.91706628 1.206557607 1 19.67570094 -6.270067708 24.93903485 0.994828849 1.227100996 0.362884081 0.146152095 673.8364085 1947628.825 0.050436757 0.045157363 5.37E-07 6.270067708 0.232272147 KPPEADMNIFEDIGDYVPS(ph)TTKTPR ddPTM_HeLa_A485_30min_R1 2 KPPEADMNIFEDIGDYVPSTTKTPR 25 2 Q13123 Q13123 IK Protein Red 1 0 KPPEADMNIFEDIGDYVPS(0.419)T(0.419)T(0.096)KT(0.066)PR;KPPEADMNIFEDIGDYVPS(0.25)T(0.25)T(0.25)KT(0.25)PR ; 158.57 1.98E-10 524696000 393405 353253 243847 430265 533962 545167 644129 836730 338413 646292 TRUE FALSE FALSE 480916.585 394562.8655 334056.1526 453769.2875 480798.8684 573711.1011 506505.5771 631520.6556 406329.385 485183.2985 0.991205976 0.813224335 0.688515358 0.935253313 0.990963353 1.182462593 1.043946852 1.301612519 0.837476035 1 18.88817036 -5.757935529 2.484111392 1.088403124 0.829742392 0.367768381 0.134051908 0.267703291 3.385513658 0.042524465 0.054002763 1.75E-06 5.757935529 -0.258660732 KPPEADMNIFEDIGDYVPS(ph)TTKTPR ddPTM_HeLa_A486_30min_R1 2 KPPEADMNIFEDIGDYVPSTTKTPR 25 2 Q13123 Q13123 IK Protein Red 1 0 KPPEADMNIFEDIGDYVPS(0.25)T(0.25)T(0.25)KT(0.25)PR;KPPEADMNIFEDIGDYVPS(0.25)T(0.25)T(0.25)KT(0.25)PR ; 84.097 0.0021898 495856000 153625 128709 89747 81724 167250 149815 193069 193704 104178 192991 TRUE FALSE FALSE 142856.6808 118509.6301 124499.4419 190257.6021 146271.9455 131332.3485 144761.0941 149601.8277 113208.2329 144664.7974 0.987501337 0.819201576 0.86060634 1.315161708 1.011109462 0.907839024 1.000665654 1.034127378 0.7825555 1 17.14235438 KPPEADMNIFEDIGDYVPSTTKT(ph)PR ddPTM_HeLa_A485_30min_R1 1 KPPEADMNIFEDIGDYVPSTTKTPR 25 2 Q13123 Q13123 IK Protein Red 1 0 KPPEADMNIFEDIGDYVPS(0.004)T(0.015)T(0.015)KT(0.966)PR 197.89 2.75E-28 502270000 552620 521840 371510 655370 786050 771890 965770 1213400 478530 932960 TRUE FALSE FALSE 675548.4125 582864.6486 508947.0088 691171.2036 707788.102 812304.9668 759425.3499 915811.7475 574566.5817 700390.2419 0.964531446 0.832199842 0.72666205 0.986837283 1.010562483 1.159789098 1.084288879 1.307573539 0.820352066 1 19.41779946 -5.620606012 2.457393316 1.089387042 0.841763574 0.356576671 0.130029344 0.277893594 3.406039184 0.040127666 0.055864372 2.40E-06 5.620606012 -0.247623468 KPPEADMNIFEDIGDYVPSTTKT(ph)PR ddPTM_HeLa_A486_30min_R1 1 KPPEADMNIFEDIGDYVPSTTKTPR 25 2 Q13123 Q13123 IK Protein Red 1 0 KPPEADMNIFEDIGDYVPS(0.167)T(0.167)T(0.167)KT(0.498)PR 166.74 6.68E-14 317650000 300640 237880 161370 162250 321760 291280 392840 381850 218060 379300 TRUE FALSE FALSE 279566.6885 219029.5225 223856.7856 377726.1997 281401.8605 255344.8351 294547.277 294911.0907 236961.6164 284320.8112 0.98327902 0.770360501 0.787338727 1.32852111 0.989733602 0.898087038 1.035968052 1.037247641 0.833430432 1 18.11716018 KPPLS(ph)PAQTNPVVQR ddPTM_HeLa_A485_30min_R1 2 KPPLSPAQTNPVVQR 15 1 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 0 KPPLS(1)PAQTNPVVQR;KPPLS(1)PAQTNPVVQR ; 149.94 3.26E-08 753440000 317488 480230 475343 269647 467410 444570 383330 416170 393679 369230 TRUE FALSE FALSE 388112.1103 536388.7211 651192.1564 284377.1328 420873.0192 467846.9978 301428.414 314103.655 472686.7643 277187.7562 1.400177683 1.935109719 2.34928182 1.025936848 1.518368001 1.687834283 1.087452123 1.133180121 1.70529453 1 18.08050401 -5.270620562 24.99934206 1.329209682 1.898881752 0.405219414 0.324952106 657.8532884 1791260.61 0.091728598 0.138251287 5.36E-06 5.270620562 0.56967207 KPPLS(ph)PAQTNPVVQR ddPTM_HeLa_A486_30min_R1 1 KPPLSPAQTNPVVQR 15 1 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 1 0 KPPLS(1)PAQTNPVVQR 97.271 0.00035976 0 159410 199750 162290 60050 212000 159120 178910 212120 163980 206290 TRUE FALSE FALSE 148236.1822 183921.0825 225133.0343 139799.4348 185408.9832 139489.3922 134144.8257 163824.9065 178193.9184 154633.6413 0.958628284 1.189398898 1.45591239 0.904068698 1.199021 0.902063685 0.867500917 1.059438976 1.152361911 1 17.23849469 -5.298335177 24.99067827 1.011724598 1.20012219 0.250055219 0.150183797 794.9364462 538433.58 0.04316011 0.064018373 5.03E-06 5.298335177 0.188397592 KPPNLEGIVFPGESGLAPGS(ph)YK ddPTM_HeLa_A485_30min_R1 1 KPPNLEGIVFPGESGLAPGSYK 22 1 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 KPPNLEGIVFPGESGLAPGS(0.994)Y(0.006)K 80.729 0.0021593 212470000 104030 77184 55399 123950 86561 100970 133070 143470 78833 172570 TRUE FALSE FALSE 127171.1146 86209.99739 75893.39544 130721.0746 77942.68291 106256.6331 104638.5074 108283.7575 94654.06 129551.4749 0.981626143 0.665449756 0.58581653 1.00902807 0.601634856 0.820188525 0.807698311 0.835835776 0.730628965 1 16.98316591 -14 0.361092651 3.763050805 0.771423629 0.184300903 0.135903178 810.8711333 6.458691762 1741.623461 0.096032714 1.00E-14 14 -2.991627176 KPPNLEGIVFPGESGLAPGS(ph)YK ddPTM_HeLa_A486_30min_R1 2 KPPNLEGIVFPGESGLAPGSYK 22 1 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 KPPNLEGIVFPGESGLAPGS(1)YK;KPPNLEGIVFPGESGLAPGS(1)YK ; 180.65 1.20E-19 339410000 769410 775710 386920 462600 767910 884190 1139420 1029280 628630 1326320 TRUE FALSE FALSE 715478.3322 714239.9145 536745.7861 1076956.179 671591.5673 775107.6276 854325.0644 794935.413 683120.1545 994200.8391 0.719651708 0.718406067 0.539876617 1.08323805 0.675508952 0.779628821 0.859308332 0.799572261 0.687104786 1 19.9231778 -14 0.160047678 1.816435852 0.706580351 0.214171557 0.134813683 216.3685174 1.987514192 56.80262424 0.568078526 1.00E-14 14 -1.1098555 KPPPT(ph)PQR ddPTM_HeLa_A486_30min_R1 2 KPPPTPQR 8 1 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 KPPPT(1)PQR;KPPPT(1)PQR ; 62.408 0.025258 143331000 270360 315980 211100 141357 285190 261520 313240 299530 232190 379560 TRUE FALSE FALSE 251409.1601 290940.594 292843.5735 329086.2398 249418.8109 229256.3213 234864.0389 231333.5577 252316.4162 284515.7055 0.883638953 1.022581841 1.029270328 1.156654039 0.876643384 0.805777386 0.82548708 0.813078341 0.886827726 1 18.11814877 -5.921010301 9.608026497 0.850816208 1.023223104 0.465564189 0.080609141 0.27252197 30.78248154 0.024757333 0.02808943 1.20E-06 5.921010301 0.172406896 KPPQHLS(ph)PDTTGPPPPPLETLEAEFGSLK ddPTM_HeLa_A485_30min_R1 1 KPPQHLSPDTTGPPPPPLETLEAEFGSLK 29 1 A0A3B3ISF0;A0A3B3IT29;A0A3B3ISF8 A0A3B3ISF0 1 0 KPPQHLS(0.733)PDT(0.12)T(0.12)GPPPPPLET(0.026)LEAEFGSLK 96.887 0.00083891 87909000 69049 64896 45661 78419 74180 78789 99145 108320 55204 93745 TRUE FALSE FALSE 84408.71183 72485.02268 62552.90401 82702.8314 66794.37874 82914.27021 77961.86081 81754.35016 66282.93644 70376.09675 1.19939462 1.029966509 0.88883736 1.175155134 0.949106043 1.178159546 1.107788929 1.161677813 0.941838771 1 16.10279788 -4.255104627 23.94721383 1.054947347 1.199394738 0.169293843 0.099522107 766.4090303 2897103.164 0.024197002 0.21710719 5.56E-05 4.255104627 0.14444739 KPPQHLS(ph)PDTTGPPPPPLETLEAEFGSLK ddPTM_HeLa_A486_30min_R1 2 KPPQHLSPDTTGPPPPPLETLEAEFGSLK 29 1 A0A3B3ISF0;A0A3B3IT29;A0A3B3ISF8 A0A3B3ISF0 1 0 KPPQHLS(0.641)PDT(0.179)T(0.179)GPPPPPLETLEAEFGSLK;KPPQHLS(0.661)PDT(0.168)T(0.168)GPPPPPLET(0.003)LEAEFGSLK ; 99.614 0.00062774 187870000 167729 142907 87209 65087 151832 162001 187422 188727 129850 191895 TRUE FALSE FALSE 155972.0633 131582.5289 120978.6603 151525.8253 132787.8148 142014.9637 140527.0333 145757.982 141105.5026 143843.243 1.084319708 0.914763364 0.841045139 1.053409407 0.923142527 0.98728978 0.976945669 1.013311289 0.980967195 1 17.13413793 -6.663149058 1.740204569 0.996923365 0.958474292 0.038733495 0.065462476 1.207352947 7.474623584 0.0335705 0.022529966 2.17E-07 6.663149058 -0.038449073 KPPTSPSS(ph)PPAPVPR ddPTM_HeLa_A485_30min_R1 1 KPPTSPSSPPAPVPR 15 1 O75161-2;O75161 O75161-2 NPHP4 Nephrocystin-4 1 0 KPPT(0.001)S(0.001)PS(0.173)S(0.824)PPAPVPR 54.004 0.025454 109650000 121890 162550 179230 111910 171610 156980 145460 161890 151610 151500 TRUE FALSE FALSE 149004.01 181558.8085 245534.6354 118023.3599 154523.9058 165199.2301 114381.2827 122186.2237 182036.7364 113733.8382 1.310111506 1.596348206 2.15885298 1.03771544 1.358644959 1.452507299 1.005692629 1.074317245 1.600550367 1 16.79530202 -5.287851661 24.98731635 1.228310245 1.67922883 0.384576004 0.272157113 772.5286353 730848.4078 0.076898935 0.114097036 5.15E-06 5.287851661 0.450918585 KPRPLS(ph)MDLTAR ddPTM_HeLa_A485_30min_R1 2 KPRPLSMDLTAR 12 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KPRPLS(1)MDLTAR;KPRPLS(1)MDLTAR ; 161.08 2.19E-10 5586600000 2684100 3501600 3102100 2361500 3882200 3608900 4151700 4985800 3365900 3549700 TRUE FALSE FALSE 3281168.785 3911081.66 4249695.879 2490502.765 3495674.537 3797856.424 3264655.379 3763024.733 4041405.256 2664825.117 1.231288599 1.467669167 1.59473725 0.934583943 1.311783844 1.425180361 1.225091792 1.412109451 1.516574288 1 21.34560943 KPRPLS(ph)MDLTAR ddPTM_HeLa_A486_30min_R1 2 KPRPLSMDLTAR 12 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KPRPLS(0.993)MDLT(0.007)AR;KPRPLS(0.998)MDLT(0.002)AR ; 163.91 1.83E-10 4658600000 2774800 3017300 2389900 1000200 3227200 2624000 3139700 3300300 2228790 2930000 TRUE FALSE FALSE 2580300.849 2778198.159 3315333.284 2328516.147 2822414.484 2300277.559 2354113.852 2548893.735 2421983.312 2196308.929 1.174835113 1.26493961 1.509502256 1.060195183 1.285071716 1.04733789 1.071850057 1.16053516 1.102751658 1 21.06664956 -5.843043052 1.40939454 1.089733305 1.294121677 0.369838369 0.114414654 0.455020802 1.885699765 0.044510128 0.057446861 1.44E-06 5.843043052 0.204388371 KPRPS(ph)EGDEDCLPASK ddPTM_HeLa_A485_30min_R1 5 KPRPSEGDEDCLPASK 16 2 Q5VU10;P78346;P78346-2 Q5VU10 RPP30 Ribonuclease P protein subunit p30 1 0 KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK ;;;; 200.23 2.80E-25 4165920000 4075860 2732300 2446090 5454290 4201320 3198450 4993060 3536750 2719060 6268200 TRUE FALSE FALSE 4982520.995 3051818.717 3351000.481 5752244.052 3783021.829 3365915.896 3926251.941 2669356.517 3264750.401 4705653.098 1.058837295 0.648543072 0.712122295 1.222411413 0.803931304 0.715291975 0.834369185 0.567265895 0.69379326 1 22.16596354 -5.993435023 24.99980753 0.74183437 0.894546861 0.1208964 0.183570663 361.9612858 1378356.031 0.057757993 0.065341763 1.02E-06 5.993435023 0.15271249 KPRPS(ph)EGDEDCLPASK ddPTM_HeLa_A486_30min_R1 4 KPRPSEGDEDCLPASK 16 2 Q5VU10;P78346;P78346-2 Q5VU10 RPP30 Ribonuclease P protein subunit p30 1 0 KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK;KPRPS(1)EGDEDCLPASK ;;; 167.61 3.45E-12 3107590000 2019350 2505830 1149000 982430 2250940 2620500 3086680 2912350 1986710 3163850 TRUE FALSE FALSE 1877803.993 2307258.905 1593923.571 2287146.689 1968606.116 2297209.353 2314360.016 2249271.481 2158919.622 2371601.367 0.791787363 0.972869613 0.672087474 0.964389177 0.830074625 0.968632159 0.97586384 0.948418867 0.910321462 1 21.1774301 -6.083054766 1.545092573 0.959323406 0.839843249 0.303633747 0.083780682 0.506994669 2.44403557 0.032879788 0.034262776 8.26E-07 6.083054766 -0.119480157 KPRPS(ph)EGDEDCLPASKK ddPTM_HeLa_A485_30min_R1 2 KPRPSEGDEDCLPASKK 17 3 Q5VU10;P78346;P78346-2 Q5VU10 RPP30 Ribonuclease P protein subunit p30 1 0 KPRPS(1)EGDEDCLPASKK;KPRPS(1)EGDEDCLPASKK ; 163.72 4.12E-11 1269410000 1015600 707080 463750 1054210 962910 909370 1559140 1305340 597930 1328610 TRUE FALSE FALSE 1241516.716 789766.8552 635310.4232 1111798.823 867039.2994 956983.207 1226017.002 985203.3183 717929.0665 997411.9783 1.244738126 0.791816092 0.636958887 1.114683648 0.869289038 0.959466327 1.229198194 0.987759662 0.719791904 1 19.92783 KPS(ph)ASERLPDEK ddPTM_HeLa_A486_30min_R1 1 KPSASERLPDEK 12 2 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 KPS(0.862)AS(0.138)ERLPDEK 83.54 0.0028793 151190000 296340 210940 94609 91154 153640 219950 267380 227670 142860 406200 TRUE FALSE FALSE 275568.0963 194224.3462 131244.1385 212211.1187 134369.0386 192814.8053 200478.6959 175834.511 155243.2198 304484.8761 0.905030489 0.637878468 0.431036642 0.696951262 0.441299549 0.633249204 0.658419224 0.57748192 0.509855274 1 18.21601104 -10.92956419 2.609786377 1.259058361 0.604409481 0.445157847 0.130435621 14637999.79 8975331.929 23161958.01 0.033301513 1.18E-11 10.92956419 -0.654648881 KPS(ph)DEEFASR ddPTM_HeLa_A485_30min_R1 4 KPSDEEFASR 10 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 KPS(1)DEEFASR;KPS(1)DEEFASR;KPS(0.995)DEEFAS(0.005)R;KPS(1)DEEFASR ;;; 109.07 0.00046566 2787560000 1005580 1167510 1037440 1319582 1433410 1204970 1633480 1592310 1042380 1793907 TRUE FALSE FALSE 1229267.802 1304040.139 1421232.227 1391667.423 1290694.667 1268060.366 1284473.654 1201793.476 1251576.105 1346718.999 0.912787153 0.968309008 1.055329455 1.033376246 0.95839939 0.941592394 0.953780005 0.892386219 0.929352081 1 20.36101742 -5.968114716 8.223653419 0.938699286 0.995426524 0.217641749 0.043382102 0.334640902 74.8445203 0.01436418 0.016207597 1.08E-06 5.968114716 0.056727238 KPS(ph)DEEFASR ddPTM_HeLa_A486_30min_R1 3 KPSDEEFASR 10 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 KPS(1)DEEFASR;KPS(1)DEEFASR;KPS(1)DEEFASR ;; 143.93 3.41E-06 3282690000 2492390 2283880 1541790 1139110 2228990 2659160 3192080 3005220 1816920 3462770 TRUE FALSE FALSE 2317686.332 2102897.031 2138812.379 2651905.647 1949409.29 2331099.876 2393387.822 2320997.009 1974412.089 2595669.853 0.8929049 0.810155817 0.823992457 1.021665234 0.751023589 0.898072562 0.92206943 0.894180362 0.760656093 1 21.30767547 -10.24782414 4.120400219 1.000099504 0.866038847 0.219613775 0.076891959 14178243.05 35262649.85 7827.918222 0.017964786 5.65E-11 10.24782414 -0.134060657 KPS(ph)DEEFASRK ddPTM_HeLa_A485_30min_R1 1 KPSDEEFASRK 11 2 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 KPS(1)DEEFASRK 75.669 0.0044436 166020000 100920 99435 62255 87940 124960 113620 188640 212880 81861 137310 TRUE FALSE FALSE 123369.3058 111063.0583 85285.71515 92743.93952 112518.5436 119568.9675 148335.523 160670.8462 98289.75183 103081.144 1.196817391 1.077433311 0.827364849 0.899717794 1.091553113 1.159949947 1.439017042 1.558683189 0.953518248 1 16.65342093 -6.301735529 2.652846658 1.282642633 0.997435555 0.204185025 0.195569485 0.366851942 5.109897274 0.075653362 0.068240358 4.99E-07 6.301735529 -0.285207078 KPS(ph)EDEVLNK ddPTM_HeLa_A486_30min_R1 2 KPSEDEVLNK 10 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 KPS(1)EDEVLNK;KPS(1)EDEVLNK ; 113.99 0.0003149 0 741010 635435 239272 355190 524176 712926 948580 819860 462684 1190010 TRUE FALSE FALSE 689069.0256 585080.8164 331924.5263 826900.2703 458428.9583 624972.4386 711235.2509 633195.7754 502789.8217 892023.7503 0.77247834 0.655902734 0.37210279 0.926993558 0.513920126 0.700623093 0.797327706 0.709841835 0.563650712 1 19.7667226 -11.24851486 2.285339112 2.227477054 0.668095132 0.310791401 0.148278409 6380456.034 1180323.967 40417569.92 0.036239064 5.64E-12 11.24851486 -1.559381921 KPS(ph)FSK ddPTM_HeLa_A486_30min_R1 2 KPSFSK 6 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 KPS(0.976)FS(0.024)K;KPS(0.959)FS(0.041)K ; 72.643 0.015691 7843900000 5391700 5116500 2746680 2232820 4376600 5518300 7494600 6824800 4097000 6953900 TRUE FALSE FALSE 5013769.673 4711049.906 3810268.055 5198117.8 3827646.018 4837508.252 5619371.81 5270942.024 4452131.259 5212598.178 0.961856161 0.90378152 0.730972909 0.997222042 0.734306748 0.928041657 1.078036637 1.011192853 0.854109814 1 22.31357122 -6.52203071 24.99901349 0.989092089 0.863937149 0.262708543 0.094954133 42.3440629 1248333.854 0.035038779 0.027486555 3.01E-07 6.52203071 -0.12515494 KPS(ph)GSPDLWK ddPTM_HeLa_A486_30min_R1 1 KPSGSPDLWK 10 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.802)GS(0.198)PDLWK 116.84 0.00024729 406890000 475340 486780 207500 206150 353500 563920 629650 606700 369290 776670 TRUE FALSE FALSE 442021.1207 448205.78 287849.557 479927.6182 309160.7337 494349.2839 472104.9102 468567.6542 401300.3545 582186.7767 0.759242804 0.769865957 0.494428195 0.824353347 0.531033589 0.849124892 0.810916581 0.804840771 0.689298298 1 19.15112255 -6.304153428 24.99903415 0.817393716 0.679189818 0.292934381 0.119478089 684.7922337 400782.7885 0.040132297 0.035393597 4.96E-07 6.304153428 -0.138203898 KPS(ph)LVASK ddPTM_HeLa_A486_30min_R1 1 KPSLVASK 8 1 P56211;H3BMD8;P56211-2;H3BQ52 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 KPS(0.998)LVAS(0.002)K 95.417 0.001777 521760000 646720 795410 296920 307700 432040 869610 996120 1179300 645660 950450 TRUE FALSE FALSE 601388.2677 732378.8148 411895.3758 716341.1503 377849.5146 762326.3597 746880.2401 910799.1339 701626.3287 712451.1336 0.844111602 1.027970594 0.578138424 1.005460047 0.530351482 1.070005119 1.048324867 1.278402252 0.984806249 1 19.44243154 -6.481455076 24.5742005 1.095095233 0.808501001 0.411777585 0.166029409 385.0775613 228443.7965 0.05544617 0.048893124 3.30E-07 6.481455076 -0.286594232 KPS(ph)PAAS(ph)PATK ddPTM_HeLa_A485_30min_R1 4 KPSPAASPATK 11 1 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 KPS(1)PAAS(0.845)PAT(0.155)K;KPS(1)PAAS(0.982)PAT(0.018)K;KPS(1)PAAS(0.997)PAT(0.003)K;KPS(1)PAAS(0.991)PAT(0.009)K ;;; 146.3 3.90E-07 2915340000 6167570 4797230 3395050 10128440 7005150 6511620 10060470 8267240 4973300 13544300 TRUE FALSE FALSE 7539524.669 5358224.318 4651020.275 10681731.03 6307692.669 6852558.354 7910968.398 6239686.427 5971395.692 10167955.27 0.741498607 0.526971665 0.457419427 1.050528916 0.620350159 0.673936713 0.778029425 0.613661868 0.58727596 1 23.27752625 -10.91077055 2.433058138 1.198537068 0.672644598 0.287494436 0.154818934 54783447.51 28362436.6 62097573.41 0.038910751 1.23E-11 10.91077055 -0.52589247 KPS(ph)PAAS(ph)PATK ddPTM_HeLa_A486_30min_R1 3 KPSPAASPATK 11 1 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 KPS(1)PAAS(0.663)PAT(0.337)K;KPS(1)PAAS(1)PATK;KPS(1)PAAS(0.992)PAT(0.008)K ;; 125.52 2.71E-05 2933280000 4949910 4937990 2108570 2706310 4467570 6287540 7387650 6721100 4093970 8429600 TRUE FALSE FALSE 4602946.87 4546685.689 2925064.773 6300426.449 3907205.712 5511847.242 5539181.831 5190852.251 4448838.616 6318773.293 0.728455771 0.719551957 0.462916556 0.997096455 0.618348773 0.87229704 0.876622973 0.821496833 0.70406682 1 22.59121307 -5.263857202 24.99902516 0.827439674 0.645232488 0.33956767 0.129481847 262.4090312 2713178.827 0.034704054 0.054333501 5.45E-06 5.263857202 -0.182207186 KPS(ph)PAASPATK ddPTM_HeLa_A485_30min_R1 2 KPSPAASPATK 11 1 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 KPS(1)PAASPATK;KPS(1)PAASPATK ; 119.45 0.00011926 1419510000 826510 682200 490080 1003480 928560 899720 1064560 957030 763710 1472520 TRUE FALSE FALSE 1010364.298 761977.3556 671380.9859 1058297.571 836109.306 946827.948 837108.0593 722316.8919 916979.5918 1105447.864 0.913986386 0.689292893 0.607338444 0.95734734 0.75635345 0.856510722 0.757256933 0.653415612 0.829509579 1 20.07619955 -8.019348571 24.12005444 1.000000006 0.771297819 0.2954941 0.104957072 1103.928353 1376164.713 0.100494562 0.025947584 9.56E-09 8.019348571 -0.228702187 KPS(ph)PAASPATK ddPTM_HeLa_A486_30min_R1 4 KPSPAASPATK 11 1 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 KPS(1)PAASPATK;KPS(1)PAASPATK;KPS(1)PAASPATK;KPS(1)PAASPATK ;;; 131.56 2.25E-05 3333560000 2622370 3004800 1507710 1251350 2783430 3299500 3538750 3532010 2245100 3425250 TRUE FALSE FALSE 2438555.405 2766688.705 2091535.69 2913206.04 2434306.255 2892441.237 2653317.321 2727848.426 2439707.076 2567545.105 0.949761467 1.07756187 0.814605237 1.134627015 0.94810652 1.1265396 1.033406313 1.062434471 0.950210016 1 21.29195819 -5.287603784 24.99975781 1.039019099 0.960334657 0.187067491 0.083753347 1292.44866 1234915.978 0.022216731 0.032965933 5.16E-06 5.287603784 -0.078684441 KPS(ph)PAQAAETPALELPLPSVPAPAPL ddPTM_HeLa_A485_30min_R1 3 KPSPAQAAETPALELPLPSVPAPAPL 26 1 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 1 0 KPS(0.938)PAQAAET(0.062)PALELPLPSVPAPAPL;KPS(0.999)PAQAAET(0.001)PALELPLPSVPAPAPL;KPS(0.5)PAQAAET(0.5)PALELPLPSVPAPAPL ;; 154.79 1.26E-09 488302000 448282 449437 406427 552932 586115 439254 635303 524520 461736 750824 TRUE FALSE FALSE 548000.7843 501994.7476 556781.2601 583137.2751 527759.3326 462252.6602 499565.3241 395880.6476 554402.1799 563657.3947 0.972223179 0.890602611 0.987800862 1.034559789 0.936312266 0.820095087 0.886292505 0.702342684 0.98358007 1 19.104459 -6.079270132 5.636646017 0.861117296 0.968913545 0.19688003 0.085250985 0.307018538 16.58564532 0.027288403 0.027550423 8.33E-07 6.079270132 0.107796249 KPS(ph)PAQAAETPALELPLPSVPAPAPL ddPTM_HeLa_A486_30min_R1 2 KPSPAQAAETPALELPLPSVPAPAPL 26 1 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 1 0 KPS(0.906)PAQAAET(0.094)PALELPLPSVPAPAPL;KPS(0.911)PAQAAET(0.089)PALELPLPSVPAPAPL ; 137.64 1.30E-06 366894000 421051 444893 281065 170247 427956 445349 502711 531104 360542 485541 TRUE FALSE FALSE 391537.4992 409638.0584 389900.8952 396343.6198 374277.7679 390406.3684 376927.3907 410183.2131 391794.0709 363958.3733 1.075775495 1.125507994 1.071278816 1.088980633 1.028353228 1.072667637 1.035633244 1.127005843 1.076480443 1 18.47341393 -5.17310789 2.108867632 1.063594754 1.099027547 0.151224413 0.035190892 0.652836624 5.646698089 0.010330041 0.021950866 6.71E-06 5.17310789 0.035432793 KPS(ph)PEPEGEVGPPK ddPTM_HeLa_A485_30min_R1 7 KPSPEPEGEVGPPK 14 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK ;;;;;; 154.26 1.97E-08 10680820000 7578760 4355720 3726925 13704950 8428290 6397320 10760240 7885230 6258800 17924740 TRUE FALSE FALSE 9264629.016 4865083.564 5105669.648 14453616.72 7589139.854 6732273.783 8461226.821 5951364.979 7514883.751 13456432.2 0.688490744 0.361543349 0.37942224 1.074104674 0.563978605 0.500301542 0.628786791 0.442269161 0.558460344 1 23.68179261 -10.08774853 3.765917427 1.000147689 0.574778786 0.301374628 0.192949668 88790997.77 163275581 173585.299 0.050363428 8.17E-11 10.08774853 -0.425368904 KPS(ph)PEPEGEVGPPK ddPTM_HeLa_A486_30min_R1 8 KPSPEPEGEVGPPK 14 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK ;;;;;;; 160.82 4.87E-12 12082710000 7005928 7572352 3115191 3879140 6915800 9278039 11368700 10700690 5816622 11115600 TRUE FALSE FALSE 6514848.626 6972291.249 4321476.383 9030833.961 6048355.877 8133408.88 8524131.014 8264376.481 6320811.478 8332181.41 0.781889916 0.83679062 0.518648859 1.083849897 0.725903047 0.976143999 1.023037137 0.991862284 0.75860224 1 22.99026282 -5.270930875 24.99604972 0.933130922 0.724877873 0.37952113 0.13125519 720.9146591 1898542.52 0.036122521 0.054385291 5.36E-06 5.270930875 -0.208253049 KPS(ph)PEPR ddPTM_HeLa_A485_30min_R1 1 KPSPEPR 7 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 KPS(1)PEPR 101.65 0.0024527 1250200000 1097800 931080 507690 1534700 642630 821300 1026000 993250 884770 1814800 TRUE FALSE FALSE 1342001.823 1039961.707 695505.6577 1618536.775 578647.5008 864301.998 806786.7184 749653.8801 1062335.223 1362403.759 0.985025044 0.763328565 0.510498927 1.188000814 0.424725414 0.634394901 0.59217887 0.550243549 0.779750655 1 20.37772289 -4.318176316 3.823565332 0.691156839 0.999439062 0.115673525 0.220834062 0.434460244 11.43821958 0.053590241 0.331170225 4.81E-05 4.318176316 0.308282223 KPS(ph)PQAEEMLK ddPTM_HeLa_A485_30min_R1 1 KPSPQAEEMLK 11 1 Q15013;Q15013-3 Q15013 MAD2L1BP MAD2L1-binding protein 1 0 KPS(1)PQAEEMLK 126.48 3.37E-05 174960000 94800 83217 74241 114130 129270 127700 166630 176590 85453 200090 TRUE FALSE FALSE 115887.9329 92948.50426 101705.8353 120364.6329 116399.4249 134386.1745 131028.1393 133281.0256 102602.6333 150211.2454 0.771499715 0.618785258 0.677085361 0.80130241 0.774904866 0.894647895 0.872292477 0.887290597 0.683055606 1 17.1966333 -5.583122907 1.594815093 0.856824268 0.681718755 0.431357665 0.084253118 0.358651264 1.861940174 0.02837957 0.045107277 2.61E-06 5.583122907 -0.175105513 KPS(ph)PQAEEMLK ddPTM_HeLa_A486_30min_R1 3 KPSPQAEEMLK 11 1 Q15013;Q15013-3 Q15013 MAD2L1BP MAD2L1-binding protein 1 0 KPS(1)PQAEEMLK;KPS(1)PQAEEMLK;KPS(1)PQAEEMLK ;; 150.39 3.75E-07 313510000 512079 502252 248322 264183 491276 606550 757350 726440 429104 825030 TRUE FALSE FALSE 476184.9065 462451.7223 344478.9287 615031.3751 429655.5831 531720.0279 567853.0196 561045.4701 466299.0802 618437.118 0.769981123 0.747774849 0.557015287 0.994492984 0.694744171 0.859780263 0.918206561 0.907198895 0.753995947 1 19.23826739 -5.795413165 0.837191139 0.889431608 0.711300547 0.25755664 0.115152984 0.936539515 1.429061577 0.060733956 0.097367404 1.60E-06 5.795413165 -0.178131061 KPS(ph)PQPS(ph)SPR ddPTM_HeLa_A485_30min_R1 4 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 2 0 KPS(1)PQPS(0.696)S(0.304)PR;KPS(0.833)PQPS(0.655)S(0.512)PR;KPS(1)PQPS(0.555)S(0.446)PR;KPS(1)PQPS(0.558)S(0.443)PR ;;; 95.273 0.0011459 4196386000 2837702 3134600 2639806 3253987 3713200 3311660 4379590 4683370 2872374 4120370 TRUE FALSE FALSE 3468939.02 3501164.203 3616380.091 3431744.07 3343500.77 3485053.397 3443854.819 3534766.164 3448833.115 3093237.589 1.121458963 1.13187691 1.169124578 1.109434362 1.08090655 1.126668514 1.113349596 1.142739949 1.114959008 1 21.56068622 -8.049725425 21.96931801 1 1.124241805 0.747953969 0.021550911 1651.559185 729679.2162 0.022173178 0.00572509 8.92E-09 8.049725425 0.124241805 KPS(ph)PQPS(ph)SPR ddPTM_HeLa_A486_30min_R1 3 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 2 0 KPS(1)PQPS(0.723)S(0.277)PR;KPS(0.995)PQPS(0.857)S(0.148)PR;KPS(1)PQPS(0.864)S(0.136)PR ;; 107.99 0.0003751 2249360000 1966060 2025700 1300480 741956 2021940 2012730 2257960 2346240 1528040 2279000 TRUE FALSE FALSE 1828249.347 1865176.155 1804060.684 1727311.064 1768329.431 1764419.837 1692994.526 1812052.37 1660491.738 1708323.566 1.070200858 1.091816674 1.05604156 1.011114697 1.035125585 1.032837029 0.991026852 1.060719647 0.972000721 1 20.70414982 -5.073219057 3.341704575 1.017872499 1.080624559 0.55775413 0.024151567 0.173117932 3.740847184 0.00627821 0.012505255 8.45E-06 5.073219057 0.06275206 KPS(ph)PQPSS(ph)PR ddPTM_HeLa_A485_30min_R1 5 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 2 0 KPS(1)PQPS(0.001)S(0.999)PR;KPS(0.934)PQPS(0.086)S(0.98)PR;KPS(0.996)PQPS(0.013)S(0.991)PR;KPS(0.996)PQPS(0.092)S(0.912)PR;KPS(1)PQPS(0.431)S(0.569)PR ;;;; 137.62 1.50E-05 7723490000 2397630 2661780 2157810 2797770 3307720 2818760 3681900 3989590 2419160 3494060 TRUE FALSE FALSE 2930974.522 2973052.017 2956073.713 2950605.091 2978391.783 2966345.915 2895231.987 3011136.797 2904663.222 2623055.145 1.117389593 1.133431 1.126958279 1.12487345 1.135466705 1.1308744 1.103763294 1.147950245 1.107358809 1 21.32281671 -8.035049023 20.87401577 1 1.127274924 0.923471175 0.010962717 125.9977255 75040.24433 0.009856395 0.00254491 9.22E-09 8.035049023 0.127274924 KPS(ph)PQPSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 2 0 KPS(1)PQPS(0.444)S(0.556)PR;KPS(0.996)PQPS(0.013)S(0.991)PR;KPS(0.919)PQPS(0.081)S(1)PR ;; 120.84 0.00010803 3583800000 3418560 3498920 2307030 1315210 3560830 3445060 4008960 4046000 2810590 3852400 TRUE FALSE FALSE 3178936.597 3221652.836 3200373.8 3061875.347 3114197.498 3020043.524 3005875.806 3124814.124 3054214.204 2887733.965 1.100841226 1.11563353 1.108264764 1.060303817 1.078422575 1.04581778 1.040911608 1.08209903 1.057650823 1 21.46150641 -1.000000005 0.073486827 0.937001257 1.397769331 0.729258751 0.017477477 129.4159832 0.700788671 0.729238935 6.121642757 0.099999999 1.000000005 0.460768074 KPS(ph)PS(ph)ESPEPWKPFPAVS(ph)PEPR ddPTM_HeLa_A486_30min_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 3 0 KPS(0.914)PS(0.618)ES(0.468)PEPWKPFPAVS(1)PEPR 103.99 0.00024544 321530000 349340 302640 183650 101280 378770 272850 291780 241710 174150 239150 TRUE FALSE FALSE 324853.07 278657.7042 254764.1983 235784.9584 331261.1347 239188.5411 218773.5579 186677.9095 189245.4622 179265.2834 1.81213598 1.554443219 1.42115748 1.315285112 1.847882247 1.334271403 1.220389993 1.041350037 1.05567268 1 17.4517366 -6.758417052 2.03703873 1.044340392 1.564352034 0.702483773 0.157134146 0.19506967 1.657053151 0.080888571 0.051953419 1.74E-07 6.758417052 0.520011642 KPS(ph)PS(ph)ESPEPWKPFPAVSPEPR ddPTM_HeLa_A485_30min_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.976)PS(0.512)ES(0.512)PEPWKPFPAVSPEPR 63.901 0.0091277 562070000 138010 118420 113790 213120 192690 170910 258210 263060 128540 310960 TRUE FALSE FALSE 168709.8484 132268.1889 155885.6562 224762.206 173505.107 179858.5833 203041.3241 198544.1225 154336.799 233443.3948 0.722701315 0.566596408 0.667766404 0.962812446 0.743242734 0.770459081 0.869766841 0.850502207 0.661131574 1 17.83271324 -2.163277116 0.072264624 1.16932097 5.52E-18 0.343496999 0.106207211 229.1589876 1.535604207 5.071000906 28.18223812 0.006866302 2.163277116 -1.16932097 KPS(ph)PSES(ph)PEPWKPFPAVSPEPR ddPTM_HeLa_A485_30min_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.92)PS(0.261)ES(0.818)PEPWKPFPAVSPEPR 91.086 0.00098026 696830000 433690 486520 347790 626540 654320 609220 748540 813760 447490 837410 TRUE FALSE FALSE 530162.8443 543414.2818 476451.9937 660766.2937 589173.6033 641117.8172 588608.314 614184.0841 537297.1384 628659.0984 0.843323266 0.864402159 0.757886102 1.051072506 0.937190927 1.019817925 0.936291729 0.97697478 0.854671697 1 19.26191838 -5.257405234 24.9998345 0.966597252 0.826123675 0.583815831 0.05649768 245.2934924 1520091.471 0.014973164 0.024758969 5.53E-06 5.257405234 -0.140473577 KPS(ph)PSES(ph)PEPWKPFPAVSPEPR ddPTM_HeLa_A486_30min_R1 2 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.974)PS(0.051)ES(0.975)PEPWKPFPAVSPEPR;KPS(0.966)PS(0.198)ES(0.836)PEPWKPFPAVSPEPR ; 132.16 9.81E-07 1378660000 1070060 1069660 522710 546290 1006010 1304720 1637250 1605440 930060 1821520 TRUE FALSE FALSE 995054.3198 984896.246 725117.3107 1271790.728 879826.8451 1143756.912 1227592.733 1239916.359 1010678.35 1365399.536 0.728764214 0.721324579 0.53106603 0.931442186 0.644373183 0.837671965 0.899072177 0.908097832 0.740207041 1 20.38089174 -6.495384975 0.207851451 1.030194139 0.568127752 0.380241487 0.108869582 4.540546149 0.55880997 0.3452664 0.694023159 3.20E-07 6.495384975 -0.462066386 KPS(ph)PSESPEPWKPFPAVSPEPR ddPTM_HeLa_A485_30min_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.888)PS(0.093)ES(0.019)PEPWKPFPAVSPEPR 115.63 5.82E-05 651890000 86539 118140 62273 108930 103770 124990 158800 179590 109970 195140 TRUE FALSE FALSE 105789.302 131955.4453 85310.3741 114880.5701 93438.29444 131534.2831 124871.0827 135545.2709 132039.9703 146495.1893 0.72213499 0.900749342 0.582342495 0.784193465 0.637825002 0.89787442 0.85239033 0.925254075 0.901326323 1 17.16049376 -6.330513586 8.64353905 0.907274688 0.730613829 0.546254205 0.086330301 0.320300853 37.74862106 0.029553229 0.026054093 4.67E-07 6.330513586 -0.176660859 KPS(ph)PSESPEPWKPFPAVSPEPR ddPTM_HeLa_A486_30min_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.841)PS(0.157)ES(0.001)PEPWKPFPAVSPEPR 131.56 1.15E-06 782540000 137060 113770 58619 47406 126140 142410 164390 174890 97975 182380 TRUE FALSE FALSE 127452.8018 104754.4509 81317.84667 110363.5638 110318.345 124840.9021 123257.8833 135071.3648 106467.5519 136710.8609 0.932280003 0.766248198 0.594816287 0.80727722 0.806946458 0.91317472 0.9015954 0.988007565 0.778779032 1 17.06076834 -6.110168833 2.184195518 0.916949493 0.761638264 0.336345978 0.094948368 0.368683977 3.468673933 0.035909456 0.036553863 7.76E-07 6.110168833 -0.155311229 KPS(ph)VSEEVQATPNK ddPTM_HeLa_A485_30min_R1 3 KPSVSEEVQATPNK 14 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 KPS(0.998)VS(0.002)EEVQATPNK;KPS(0.995)VS(0.005)EEVQATPNK;KPS(0.62)VS(0.38)EEVQATPNK ;; 235.64 1.01E-34 3974350000 2851540 2180370 1662755 3413890 2873180 2599470 3679260 3088830 1899155 3749040 TRUE FALSE FALSE 3485855.235 2435345.305 2277877.268 3600382.166 2587116.111 2735574.23 2893156.044 2331289.599 2280297.988 2814473.324 1.238546198 0.86529344 0.80934406 1.279238334 0.919218558 0.971966658 1.027956463 0.828321796 0.810204158 1 21.42443354 -7.257713806 24.77210185 0.864447229 1.006913549 0.147385684 0.147946223 524.7090281 3488928.251 0.071742452 0.039353279 5.52E-08 7.257713806 0.142466319 KPS(ph)VSEEVQATPNK ddPTM_HeLa_A486_30min_R1 4 KPSVSEEVQATPNK 14 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 KPS(0.999)VS(0.001)EEVQATPNK;KPS(0.998)VS(0.002)EEVQATPNK;KPS(0.9)VS(0.1)EEVQATPNK;KPS(0.985)VS(0.015)EEVQATPNK ;;; 224.64 1.96E-27 2811940000 4546970 4106850 2298931 1711433 6050200 4695980 5307050 5128370 3336738 5732210 TRUE FALSE FALSE 4228250.884 3781408.249 3189138.651 3984302.515 5291327.5 4116637.733 3979169.958 3960752.103 3625969.136 4296827.306 0.984040219 0.880046597 0.742207779 0.927266151 1.231449887 0.958064507 0.926071651 0.921785266 0.843871275 1 22.03484036 -3.896166101 16.7190244 0.937153468 3.539187995 0.014021633 0.118920424 16772378.49 17339732.36 13.79523736 1639207635 0.000127009 3.896166101 2.602034527 KPSDGS(ph)PDTKPSR ddPTM_HeLa_A485_30min_R1 5 KPSDGSPDTKPSR 13 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 0 KPSDGS(0.953)PDT(0.039)KPS(0.008)R;KPSDGS(1)PDTKPSR;KPSDGS(1)PDTKPSR;KPS(0.009)DGS(0.989)PDT(0.001)KPS(0.002)R;KPSDGS(1)PDTKPSR ;;;; 163.51 3.64E-12 3549660000 2720470 2216610 1573760 3655880 3117450 2968600 4505830 4507050 2239070 4903420 TRUE FALSE FALSE 3325629.166 2475823.258 2155959.314 3855591.467 2807065.732 3124031.306 3543122.611 3401688.921 2688430.811 3681087.635 0.903436564 0.672579276 0.585685408 1.047405509 0.762564223 0.848670723 0.962520582 0.924098869 0.730335998 1 21.81170067 -5.255593648 24.99972399 0.888526754 0.715768313 0.314010915 0.118699132 593.1389121 2536597.907 0.031932612 0.053474155 5.55E-06 5.255593648 -0.172758442 KPSDGS(ph)PDTKPSR ddPTM_HeLa_A486_30min_R1 3 KPSDGSPDTKPSR 13 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 0 KPSDGS(1)PDTKPSR;KPS(0.001)DGS(0.999)PDTKPSR;KPS(0.024)DGS(0.944)PDT(0.032)KPSR ;; 166.48 2.92E-12 4038660000 4460470 3912330 1784810 2277120 3524740 4868970 6236000 5491200 3070130 6385800 TRUE FALSE FALSE 4147814.087 3602302.722 2475936.231 5301250.439 3082634.242 4268285.985 4675686.842 4240973.632 3336251.34 4786754.115 0.866519146 0.752556458 0.517247423 1.107483341 0.643992603 0.89168691 0.976796955 0.885981091 0.696975708 1 22.19061627 -5.254065786 24.99990948 0.875300308 0.716152581 0.215058561 0.15130919 975.5408079 3307529.354 0.04036422 0.068151356 5.57E-06 5.254065786 -0.159147727 KPSGLNGEAS(ph)KSQEMVHLVNK ddPTM_HeLa_A485_30min_R1 1 KPSGLNGEASKSQEMVHLVNK 21 2 P16070-14;H0YE40;P16070-4;H0YD13;P16070-8;P16070-5;P16070-7;P16070-3;P16070-6;P16070-17;H0Y2P0;P16070-16;P16070-10;P16070-11;P16070-13;P16070-12;P16070-18;P16070 P16070-14 CD44 CD44 antigen 1 0 KPS(0.001)GLNGEAS(0.669)KS(0.33)QEMVHLVNK 116.47 1.72E-05 2015200000 548960 332300 134120 772000 335260 539170 770030 635360 384340 1746200 TRUE FALSE FALSE 671074.2581 371159.5944 183736.5692 814172.4052 301880.3372 567400.1075 605506.7999 479536.9638 461473.5126 1310904.476 0.511916978 0.283132449 0.140160151 0.621076837 0.230284008 0.432831009 0.461900017 0.365806184 0.352026804 1 20.32213113 -13.506638 0.46023729 10 0.367433284 0.663667629 0.132732928 533.0501916 4.819310349 4836.233191 0.067962263 3.11E-14 13.506638 -9.632566716 KPSGLNGEASKS(ph)QEMVHLVNK ddPTM_HeLa_A485_30min_R1 1 KPSGLNGEASKSQEMVHLVNK 21 2 P16070-14;H0YE40;P16070-4;H0YD13;P16070-8;P16070-5;P16070-7;P16070-3;P16070-6;P16070-17;H0Y2P0;P16070-16;P16070-10;P16070-11;P16070-13;P16070-12;P16070-18;P16070 P16070-14 CD44 CD44 antigen 1 0 KPSGLNGEAS(0.057)KS(0.943)QEMVHLVNK 193.88 3.23E-20 2428400000 1499800 952830 434530 1991400 871840 1406400 2167600 1757800 1038600 5165100 TRUE FALSE FALSE 1833425.336 1064255.18 595280.7293 2100185.14 785036.5484 1480036.929 1704474.552 1326696.794 1247037.493 3877535.627 0.472832622 0.274466899 0.153520377 0.541628844 0.202457598 0.38169525 0.439576761 0.342149479 0.321605683 1 21.88670861 -13.32775086 0.487324898 9.999999998 0.338999013 0.748368733 0.113350592 482.4471437 4.836711083 4640.966962 0.054296403 4.70E-14 13.32775086 -9.661000985 KPSGLNGEASKS(ph)QEMVHLVNK ddPTM_HeLa_A486_30min_R1 2 KPSGLNGEASKSQEMVHLVNK 21 2 P16070-14;H0YE40;P16070-4;H0YD13;P16070-8;P16070-5;P16070-7;P16070-3;P16070-6;P16070-17;H0Y2P0;P16070-16;P16070-10;P16070-11;P16070-13;P16070-12;P16070-18;P16070 P16070-14 CD44 CD44 antigen 1 0 KPS(0.001)GLNGEAS(0.165)KS(0.834)QEMVHLVNK;KPSGLNGEAS(0.078)KS(0.922)QEMVHLVNK ; 189.08 8.31E-20 4201200000 1937290 1805860 1073550 1011550 2910000 2901230 3219850 2860530 2233460 4283100 TRUE FALSE FALSE 1801495.975 1662757.077 1489257.311 2354939.521 2545000.665 2543305.74 2414209.474 2209249.764 2427058.111 3210583.882 0.561111636 0.517898656 0.463858714 0.733492601 0.792690912 0.792162994 0.751953403 0.688114638 0.755955365 1 21.61440426 -5.350548347 4.762165398 0.777068304 0.515173811 0.709115286 0.080371165 0.120174011 4.646105477 0.022050496 0.033477486 4.46E-06 5.350548347 -0.261894493 KPSGS(ph)PDLWK ddPTM_HeLa_A485_30min_R1 4 KPSGSPDLWK 10 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.077)GS(0.923)PDLWK;KPS(0.018)GS(0.982)PDLWK;KPS(0.005)GS(0.995)PDLWK;KPS(0.005)GS(0.995)PDLWK ;;; 122.63 8.44E-05 5997560000 8719900 6972470 4950870 13545280 8625690 9520320 14587230 13183010 7495010 17748460 TRUE FALSE FALSE 10659611.67 7787839.714 6782402.836 14285224.35 7766886.017 10018789.23 11470549.14 9949856.127 8999189.759 13324095.56 0.800025159 0.584492935 0.509032888 1.072134636 0.582920318 0.751930155 0.860887637 0.746756587 0.675407176 1 23.66753427 -14 0.183324378 2.086841825 0.679352247 0.212031917 0.15357618 215.054336 2.081721973 85.57050673 0.456634458 1.00E-14 14 -1.407489578 KPSGS(ph)PDLWK ddPTM_HeLa_A486_30min_R1 3 KPSGSPDLWK 10 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.06)GS(0.94)PDLWK;KPSGS(1)PDLWK;KPS(0.045)GS(0.955)PDLWK ;; 141 5.53E-06 6488510000 13518430 13221620 5453490 6623240 10689690 16061920 19397880 18007840 10349410 24283800 TRUE FALSE FALSE 12570857.87 12173890.68 7565227.378 15419237.44 9348889.403 14080363.62 14544325.25 13907847.94 11246505.19 18202978.42 0.690593461 0.668785646 0.415603821 0.847072225 0.513591193 0.773519766 0.799007993 0.764042434 0.617838737 1 24.11767119 -6.354583344 10.80689783 0.77692259 0.629951788 0.260393112 0.136946325 0.906197005 101.163392 0.046077066 0.040621627 4.42E-07 6.354583344 -0.146970802 KPSGS(ph)PDLWKLS(ph)PDQR ddPTM_HeLa_A486_30min_R1 1 KPSGSPDLWKLSPDQR 16 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.398)GS(0.602)PDLWKLS(1)PDQR 110.75 0.00069395 567270000 546610 523270 229650 355140 515440 654380 932390 843820 385850 1042300 TRUE FALSE FALSE 508295.4617 481804.1795 318576.6302 826783.8678 450788.7089 573649.2488 699096.1602 651700.6065 419295.7887 781301.2958 0.650575475 0.61666886 0.407751314 1.05821387 0.576971664 0.73422283 0.894784335 0.834122009 0.536663373 1 19.57551948 -13.99999899 0.041722392 2.235582943 3.36E-11 0.210282088 0.178269119 1232.902165 3.827722558 189.3506575 53.99823006 1.00E-14 13.99999899 -2.235582943 KPSKYPLCSADAAVS(ph)TTPPGS(ph)PPPPPPLPEPPVLK ddPTM_HeLa_A486_30min_R1 1 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 KPSKYPLCSADAAVS(0.749)T(0.134)T(0.117)PPGS(1)PPPPPPLPEPPVLK 196.19 2.41E-22 3939800000 1534000 1501500 720050 515390 1308000 1376200 1546800 1534300 1143700 1758700 TRUE FALSE FALSE 1426474.522 1382515.672 998872.6436 1199853.966 1143938.443 1206418.436 1159774.28 1184973.384 1242836.837 1318310.073 1.082047806 1.048702957 0.757691733 0.910145489 0.867730944 0.915124948 0.879743168 0.89885787 0.942750012 1 20.33025831 -4.613585352 8.85143887 0.892561022 1.073666816 0.574986632 0.058291968 0.154032472 13.1839374 0.014001683 0.037224647 2.43E-05 4.613585352 0.181105794 KPSKYPLCSADAAVSTT(ph)PPGS(ph)PPPPPPLPEPPVLK ddPTM_HeLa_A485_30min_R1 2 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 KPSKYPLCSADAAVS(0.098)T(0.112)T(0.79)PPGS(1)PPPPPPLPEPPVLK;KPSKYPLCS(0.001)ADAAVS(0.118)T(0.137)T(0.743)PPGS(1)PPPPPPLPEPPVLK ; 168.79 1.07E-13 4950000000 1514150 1283190 841075 1662930 1562560 1630980 2173520 1786080 1464190 2406320 TRUE FALSE FALSE 1850967.444 1433247.908 1152223.643 1753771.655 1406986.04 1716375.591 1709129.696 1348041.08 1758039.503 1806468.709 1.024632995 0.793397583 0.637832051 0.970828693 0.778859901 0.950127496 0.946116413 0.746229964 0.973191229 1 20.78474083 -6.26814923 24.84108313 0.908708853 0.834372889 0.099842385 0.118412135 1363.624086 5048368.529 0.041231705 0.037159485 5.39E-07 6.26814923 -0.074335964 KPSKYPLCSADAAVSTT(ph)PPGS(ph)PPPPPPLPEPPVLK ddPTM_HeLa_A486_30min_R1 1 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 KPSKYPLCSADAAVS(0.126)T(0.144)T(0.73)PPGS(1)PPPPPPLPEPPVLK 139.2 2.77E-06 3761300000 2322900 2137000 1029200 812720 1865500 2039200 2497800 2517300 1704900 2394500 TRUE FALSE FALSE 2160076.705 1967656.337 1427733.803 1892053.233 1631511.595 1787624.237 1872824.021 1944165.742 1852682.105 1794901.614 1.203451313 1.096247461 0.795438475 1.054126431 0.90896993 0.995945529 1.043413191 1.083160061 1.032191453 1 20.77547334 -9.569465209 13.99467721 1 1.018121547 0.002088497 0.104311252 0 0 0.103286415 0.025050635 2.69E-10 9.569465209 0.018121547 KPSLVSDLPWEGAAPQS(ph)PSFSGSEDSGSPK ddPTM_HeLa_A485_30min_R1 1 KPSLVSDLPWEGAAPQSPSFSGSEDSGSPK 30 1 Q13425;Q13425-2;H7BY41;H0YCS0 Q13425 SNTB2 Beta-2-syntrophin 1 0 KPSLVSDLPWEGAAPQS(0.993)PS(0.006)FSGSEDSGSPK 105.87 0.00010256 151470000 90849 90299 55366 101370 99447 110970 137370 129000 84569 154760 TRUE FALSE FALSE 111058.0466 100858.6826 75848.18737 106907.5864 89545.7075 116780.2176 108019.7773 97362.54774 101541.2226 116181.1801 0.955903929 0.868115494 0.652844009 0.920179897 0.770741934 1.005156063 0.929752798 0.838023401 0.873990284 1 16.82601686 -6.250806263 24.93436321 0.919283992 0.830249736 0.2125123 0.091092091 1251.863332 2935586.339 0.03068383 0.030372948 5.61E-07 6.250806263 -0.089034256 KPSLVSDLPWEGAAPQS(ph)PSFSGSEDSGSPK ddPTM_HeLa_A486_30min_R1 1 KPSLVSDLPWEGAAPQSPSFSGSEDSGSPK 30 1 Q13425;Q13425-2;H7BY41;H0YCS0 Q13425 SNTB2 Beta-2-syntrophin 1 0 KPSLVSDLPWEGAAPQS(0.996)PS(0.003)FS(0.001)GSEDSGSPK 99.143 0.00022945 136260000 52138 47726 31055 27801 52638 57007 68134 65254 48549 81174 TRUE FALSE FALSE 48483.39544 43944.01794 43080.32768 64722.13298 46035.65121 49974.05594 51086.15255 50397.08868 52757.26641 60847.50205 0.796801739 0.722199211 0.708004868 1.063677732 0.756574217 0.821300041 0.839576825 0.828252385 0.867040793 1 15.89291042 -14 0.09819741 1.553338268 0.699544606 0.289398984 0.091171697 264.5311871 1.771222826 30.26854059 1.678309413 1.00E-14 14 -0.853793662 KPSLVSDLPWEGAAPQSPSFSGSEDSGS(ph)PK ddPTM_HeLa_A486_30min_R1 1 KPSLVSDLPWEGAAPQSPSFSGSEDSGSPK 30 1 Q13425;Q13425-2;H7BY41;H0YCS0 Q13425 SNTB2 Beta-2-syntrophin 1 0 KPSLVSDLPWEGAAPQSPSFSGSEDS(0.022)GS(0.978)PK 156.81 2.80E-10 415270000 164450 152220 67387 129290 123750 198230 258270 216800 136090 387470 TRUE FALSE FALSE 152922.9042 140157.5328 93481.05109 300993.654 108228.1211 173774.3981 193648.1143 167439.3727 147886.3908 290444.99 0.526512453 0.482561372 0.321854583 1.036318974 0.372628638 0.598303996 0.666729057 0.576492549 0.509171774 1 18.14790542 -10.93299752 2.404667576 1.297775053 0.568429683 0.332142252 0.18474845 30441953.07 14828626.61 50875745.6 0.045466864 1.17E-11 10.93299752 -0.72934537 KPSPQPS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 1 0 KPS(0.051)PQPS(0.474)S(0.474)PR 77.062 0.02547 233080000 222490 224290 184530 78456 249280 186510 239470 234600 181920 239060 TRUE FALSE FALSE 206894.5999 206516.4435 255984.9579 182649.5329 218012.978 163500.2925 179552.0731 181186.7013 197688.9721 179197.82 1.154559804 1.152449531 1.428504866 1.019262025 1.216605079 0.912401125 1.001976883 1.011098803 1.103188488 1 17.45119356 -5.873716314 1.678934601 1.011540124 1.22075202 0.400764804 0.108505361 0.359853943 2.090924102 0.039493313 0.048238314 1.34E-06 5.873716314 0.209211897 KPSPQPSS(ph)PR ddPTM_HeLa_A485_30min_R1 4 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 1 0 KPS(0.008)PQPS(0.213)S(0.779)PR;KPS(0.001)PQPS(0.044)S(0.955)PR;KPSPQPS(0.437)S(0.563)PR;KPSPQPS(0.041)S(0.958)PR ;;; 108.32 0.00048677 7291571000 5088550 6706820 5928190 4826280 7096280 6629100 7383360 8538890 5700710 6349580 TRUE FALSE FALSE 6220480.392 7491124.257 8121274.174 5089927.456 6389749.447 6976189.425 5805844.819 6444713.839 6844790.207 4766746.561 1.304974014 1.571538189 1.703735256 1.067799051 1.340484409 1.463511713 1.217988988 1.352015207 1.435945905 1 22.18457349 -13.11962881 0.160001932 2.44E-11 1.493454898 0.320366296 0.168142875 122.1003188 1.452063146 40.53580917 0.769156824 7.59E-14 13.11962881 1.493454898 KPSPQPSS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 1 0 KPS(0.001)PQPS(0.189)S(0.81)PR;KPS(0.001)PQPS(0.018)S(0.981)PR;KPSPQPS(0.125)S(0.875)PR;KPSPQPS(0.019)S(0.98)PR ;;; 101.32 0.00087856 7078730000 8717230 8982417 7074277 3000610 9703230 7976082 8985910 9492220 7163872 8862050 TRUE FALSE FALSE 8106197.193 8270617.564 9813626.51 6985571.722 8486160.414 6992074.098 6737540.275 7331048.72 7784842.193 6642934.998 1.220273448 1.245024611 1.477302806 1.051579117 1.277471542 1.052557958 1.014241488 1.103585798 1.171897993 1 22.66338937 -5.818702197 1.332906366 1.075629419 1.291680401 0.413543019 0.107973543 0.428260108 1.594931354 0.042697824 0.057090318 1.52E-06 5.818702197 0.216050981 KPSPSES(ph)PEPWKPFPAVS(ph)PEPR ddPTM_HeLa_A485_30min_R1 3 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.023)PS(0.138)ES(0.839)PEPWKPFPAVS(1)PEPR;KPS(0.144)PS(0.152)ES(0.705)PEPWKPFPAVS(1)PEPR;KPS(0.142)PS(0.16)ES(0.698)PEPWKPFPAVS(1)PEPR ;; 116.94 4.39E-05 1993360000 927370 849540 629470 1142360 1095440 1062680 1501070 1554000 792200 1487790 TRUE FALSE FALSE 1133660.257 948886.313 862337.1474 1204764.234 986374.1473 1118320.282 1180354.132 1172879.063 951187.2735 1116911.334 1.01499575 0.849562794 0.772073057 1.078657005 0.883126635 1.001261468 1.056802001 1.050109376 0.851622904 1 20.09108323 -5.266059703 24.9892175 0.989834899 0.875945761 0.246278491 0.088062812 528.7643518 2859846.726 0.024527595 0.037745579 5.42E-06 5.266059703 -0.113889137 KPSPSES(ph)PEPWKPFPAVS(ph)PEPR ddPTM_HeLa_A486_30min_R1 3 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.152)PS(0.152)ES(0.696)PEPWKPFPAVS(1)PEPR;KPS(0.064)PS(0.064)ES(0.872)PEPWKPFPAVS(1)PEPR;KPS(0.11)PS(0.139)ES(0.751)PEPWKPFPAVS(1)PEPR ;; 146.83 1.09E-09 1721830000 1246890 1114040 675487 570429 1119640 1300910 1591620 1520550 908046 1726660 TRUE FALSE FALSE 1159489.45 1025759.413 937053.6566 1327987.54 979204.311 1140416.951 1193379.842 1174353.958 986756.1584 1294293.097 0.895847666 0.792524827 0.723988762 1.026033085 0.756555307 0.881111823 0.922032146 0.90733232 0.762390034 1 20.30373293 -14 0.243441016 1.830966891 0.839786898 0.18656001 0.089196323 298.1575654 2.971646351 123.3072852 0.134442646 1.00E-14 14 -0.991179993 KPSPSES(ph)PEPWKPFPAVSPEPR ddPTM_HeLa_A485_30min_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.006)PS(0.011)ES(0.983)PEPWKPFPAVSPEPR 93.278 0.00058187 2660800000 501960 434950 315330 570620 560490 551000 738480 738750 351400 642430 TRUE FALSE FALSE 613619.2703 485813.6189 431983.689 601791.5257 504685.6476 579849.508 580697.7152 557570.4042 421922.7568 482284.024 1.272319297 1.007318498 0.895703916 1.247794859 1.046449027 1.20229881 1.204057539 1.156103823 0.874842905 1 18.8795235 -7.755821513 24.99961898 0.937421429 1.123325344 0.309358384 0.114250619 157.6839792 701720.7061 0.083505065 0.029595587 1.75E-08 7.755821513 0.185903914 KPSPSESPEPWKPFPAVS(ph)PEPR ddPTM_HeLa_A486_30min_R1 2 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPSPSESPEPWKPFPAVS(1)PEPR;KPSPSESPEPWKPFPAVS(1)PEPR ; 119.22 1.93E-05 555160000 847340 884170 549870 341020 934560 835710 929990 935220 681860 1005420 TRUE FALSE FALSE 787945.8417 814105.1491 762794.39 793911.7942 817338.7704 732608.5971 697296.6656 722290.8217 740964.1738 753656.2878 1.045497602 1.080207466 1.012125026 1.053413614 1.084498045 0.97207256 0.925218401 0.958382267 0.983159281 1 19.52354719 -6.335178661 6.430429781 0.961727717 1.053926328 0.736505371 0.026032003 0.12152966 8.68198967 0.009249927 0.008152789 4.62E-07 6.335178661 0.092198611 KPSQTAS(ph)YER ddPTM_HeLa_A485_30min_R1 6 KPSQTASYER 10 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 KPSQT(0.264)AS(0.736)YER;KPSQT(0.079)AS(0.921)YER;KPSQT(0.003)AS(0.997)YER;KPSQT(0.003)AS(0.996)YER;KPSQT(0.113)AS(0.887)YER;KPSQT(0.241)AS(0.759)YER ;;;;; 121.45 0.00011759 3491100000 2214610 2492310 2136560 2034030 2485410 2436930 2537440 2355350 1787510 2563740 TRUE FALSE FALSE 2707242.354 2783763.974 2926962.454 2145143.908 2237953.854 2564523.887 1995295.215 1777696.719 2146246.861 1924646.8 1.406617751 1.446376537 1.520779009 1.114564973 1.162786779 1.332464682 1.03670721 0.923648287 1.11513804 1 20.87616228 -5.711995737 0.540518095 0.99485321 1.523929376 0.675068714 0.111470553 0.727336727 0.419121679 0.090525911 0.201693171 1.94E-06 5.711995737 0.529076166 KPSQTAS(ph)YER ddPTM_HeLa_A486_30min_R1 5 KPSQTASYER 10 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 KPSQT(0.084)AS(0.915)YER;KPSQT(0.067)AS(0.933)YER;KPSQT(0.004)AS(0.996)YER;KPSQT(0.006)AS(0.994)YER;KPSQT(0.161)AS(0.839)YER ;;;; 149.32 2.39E-06 2649480000 2795070 3089550 2304320 994751 3114250 2636260 2884390 2825890 2458750 3273210 TRUE FALSE FALSE 2599150.027 2844722.806 3196614.416 2315830.6 2723631.726 2311025.045 2162685.114 2182496.536 2671876.43 2453576.911 1.059330977 1.15941864 1.302838481 0.94385898 1.110065763 0.941900388 0.881441745 0.889516251 1.088971949 1 21.22645506 -5.280748632 24.94478968 0.974591214 1.172418302 0.497719505 0.08942976 638.9943871 825487.8808 0.026088021 0.038758708 5.24E-06 5.280748632 0.197827088 KPSVGVPPPAS(ph)PSYPR ddPTM_HeLa_A485_30min_R1 4 KPSVGVPPPASPSYPR 16 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 KPSVGVPPPAS(0.977)PS(0.023)YPR;KPSVGVPPPAS(0.964)PS(0.036)YPR;KPSVGVPPPAS(0.878)PS(0.122)YPR;KPSVGVPPPAS(0.826)PS(0.174)YPR ;;; 112.32 9.88E-05 3332900000 2123380 3049590 2510080 1763460 2853940 3057520 3215420 3851050 2407820 2655650 TRUE FALSE FALSE 2595718.555 3406213.023 3438663.045 1859793.354 2569791.713 3217607.019 2528419.249 2906573.949 2891047.388 1993645.329 1.301996157 1.708535101 1.724811829 0.932860689 1.288991415 1.613931512 1.268239247 1.457919274 1.450131248 1 20.92697735 -10.98245042 2.724779143 0.624920982 1.418751132 0.235107479 0.225272012 50158406.79 47293082.12 118748981.4 0.058961986 1.04E-11 10.98245042 0.79383015 KPSVGVPPPAS(ph)PSYPR ddPTM_HeLa_A486_30min_R1 4 KPSVGVPPPASPSYPR 16 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 KPSVGVPPPAS(0.971)PS(0.029)YPR;KPSVGVPPPAS(0.992)PS(0.008)YPR;KPSVGVPPPAS(0.977)PS(0.023)YPR;KPSVGVPPPAS(0.968)PS(0.032)YPR ;;; 110.75 0.00011122 3571420000 3012200 3043930 2562000 932290 3496100 2549460 2803920 2700450 2734760 3138370 TRUE FALSE FALSE 2801060.335 2802717.901 3554075.013 2170418.235 3057586.538 2234933.546 2102349.559 2085616.485 2971811.199 2352501.725 1.190673021 1.191377618 1.510764041 0.922600061 1.299717023 0.95002419 0.89366547 0.886552585 1.263255694 1 21.16576435 -5.861056712 1.322555399 0.993231126 1.26055912 0.268842273 0.171603458 0.550009885 2.015408848 0.068932209 0.088650717 1.38E-06 5.861056712 0.267327994 KPSVS(ph)EEVQATPNK ddPTM_HeLa_A485_30min_R1 1 KPSVSEEVQATPNK 14 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 KPS(0.408)VS(0.592)EEVQATPNK 102.58 0.00030295 566670000 1189700 1078100 797600 1534600 1309900 1223000 1674200 1346100 882330 1692200 TRUE FALSE FALSE 1454344.661 1204174.417 1092665.431 1618431.312 1179481.757 1287034.389 1316493.493 1015966.864 1059405.538 1270365.683 1.144823637 0.947895896 0.860118819 1.273988533 0.928458453 1.013121187 1.036310655 0.799743632 0.833937466 1 20.27681241 -7.249899744 24.59857539 0.862630412 1.024528255 0.248685377 0.119478528 750.9111911 1600691.667 0.055680441 0.031781647 5.62E-08 7.249899744 0.161897842 KPT(ph)SPVKPIPQNTEYR ddPTM_HeLa_A486_30min_R1 1 KPTSPVKPIPQNTEYR 16 2 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 KPT(0.672)S(0.328)PVKPIPQNTEYR 96.848 0.00067205 465610000 343900 382250 196240 199270 404800 429960 484090 499220 282330 458650 TRUE FALSE FALSE 319794.3859 351959.1179 272229.3835 463910.6305 354026.2094 376915.9067 362965.5618 385558.5039 306802.5917 343801.0547 0.930172789 1.023729023 0.791822421 1.349357788 1.029741487 1.096319809 1.055743014 1.121458177 0.892384091 1 18.39121445 -5.215357301 24.99999927 1.080762132 0.926090275 0.272902283 0.12118487 586.0466728 317935.4723 0.03157247 0.054684861 6.09E-06 5.215357301 -0.154671857 KPTAEAS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 KPTAEASPVK 10 1 H3BMJ2;Q6ZRI6-2;Q6ZRI6 H3BMJ2 C15orf39 Uncharacterized protein C15orf39 1 0 KPTAEAS(1)PVK 89.624 0.0019444 576030000 418210 381420 279220 627620 503840 500620 776780 633220 386540 971990 TRUE FALSE FALSE 511239.3717 426023.7511 382515.0973 661905.2914 453675.9205 526831.6891 610814.6073 477921.8021 464115.0324 729690.7812 0.700624682 0.583841488 0.524215335 0.907103815 0.621737224 0.721993073 0.837086918 0.654964835 0.636043437 1 19.4769257 -14 0.251674872 2.871852104 0.662157647 0.420215169 0.109097027 187.5509192 1.859172736 181.1309245 0.159450274 1.00E-14 14 -2.209694456 KPTAEAS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 KPTAEASPVK 10 1 H3BMJ2;Q6ZRI6-2;Q6ZRI6 H3BMJ2 C15orf39 Uncharacterized protein C15orf39 1 0 KPTAEAS(1)PVK;KPTAEAS(1)PVK ; 97.836 0.0011961 954000000 861430 784710 370290 465230 696650 1007300 1158750 1114410 675750 1458730 TRUE FALSE FALSE 801048.2054 722526.7217 513676.2047 1083078.951 609269.661 883029.5675 868818.494 860683.1704 734324.5541 1093454.513 0.732584845 0.660774374 0.469773729 0.990511209 0.557197079 0.807559489 0.794562996 0.787122976 0.671563879 1 20.06046178 -14 0.143612657 1.963414421 0.625927127 0.288023128 0.135284854 173.4323583 1.507426989 47.8586643 0.749501021 1.00E-14 14 -1.337487294 KPTSAKPSSTT(ph)PR ddPTM_HeLa_A485_30min_R1 1 KPTSAKPSSTTPR 13 2 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KPTSAKPS(0.004)S(0.025)T(0.114)T(0.857)PR 86.497 0.00044136 0 1194200 869080 813940 1524600 1315900 972630 1051300 901920 1110600 1940900 TRUE FALSE FALSE 1459845.67 970711.346 1115050.277 1607885.038 1184884.376 1023555.403 826681.1667 680722.7058 1333487.233 1457069.35 1.001905414 0.666208061 0.765269187 1.103506184 0.813196967 0.70247542 0.567358834 0.467186209 0.915184465 1 20.47463811 -6.194895595 4.231911907 0.686324515 0.869445044 0.108274838 0.184038484 0.408704777 14.52408688 0.062831252 0.061941708 6.38E-07 6.194895595 0.18312053 KPTSAKPSSTT(ph)PR ddPTM_HeLa_A486_30min_R1 1 KPTSAKPSSTTPR 13 2 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KPT(0.001)S(0.001)AKPS(0.166)S(0.166)T(0.166)T(0.502)PR 70.197 0.010683 2679400000 5843800 6460200 4121500 2329300 5810200 6675500 6528800 6399800 5759300 5918500 TRUE FALSE FALSE 5434179.797 5948270.224 5717455.178 5422728.116 5081430.538 5851944.682 4895225.185 4942705.247 6258520.761 4436469.077 1.224888465 1.34076675 1.288740004 1.222307205 1.145377202 1.319054541 1.103405682 1.1141079 1.41069861 1 22.08098048 -14 0.196083373 2.42E-08 1.274315327 0.327824041 0.098451476 165.129227 1.627079077 65.13682565 0.247150612 1.00E-14 14 1.274315303 KPVGEVHSQFSTGHANS(ph)PCTIIIGK ddPTM_HeLa_A485_30min_R1 2 KPVGEVHSQFSTGHANSPCTIIIGK 25 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 KPVGEVHSQFS(0.001)T(0.001)GHANS(0.883)PCT(0.115)IIIGK;KPVGEVHSQFSTGHANS(0.999)PCT(0.001)IIIGK ; 149.84 2.74E-09 1140370000 434970 610980 495210 249670 759120 484580 578850 754570 619320 636400 TRUE FALSE FALSE 531727.5759 682428.7962 678408.7864 263308.8399 683539.3474 509951.8595 455173.9687 569510.5244 743611.8433 477757.1921 1.112966136 1.428400885 1.419986549 0.551135272 1.430725395 1.067387091 0.952730752 1.192050133 1.556463944 1 18.86591807 KPVGEVHSQFSTGHANS(ph)PCTIIIGK ddPTM_HeLa_A486_30min_R1 2 KPVGEVHSQFSTGHANSPCTIIIGK 25 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 KPVGEVHSQFS(0.003)T(0.003)GHANS(0.905)PCT(0.089)IIIGK;KPVGEVHSQFSTGHANS(0.999)PCT(0.001)IIIGK ; 173.9 2.19E-14 926830000 820600 754540 587370 75269 781150 573150 715160 646580 734160 414070 TRUE FALSE FALSE 763080.1776 694747.5024 814815.3943 175230.0359 683170.8831 502440.5804 536219.4038 499367.8487 797797.5799 310384.1769 2.458502187 2.238347036 2.625183418 0.564558534 2.201049325 1.618769956 1.727599033 1.608870187 2.57035519 1 18.24369549 KPVNYSQFDHS(ph)DS(ph)DDDFVSATVPLNKK ddPTM_HeLa_A485_30min_R1 1 KPVNYSQFDHSDSDDDFVSATVPLNKK 27 2 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 Q96B01-3 RAD51AP1 RAD51-associated protein 1 2 0 KPVNYSQFDHS(1)DS(1)DDDFVSATVPLNKK 147.73 3.12E-09 311590000 264840 169050 155690 460620 352950 266800 421200 381250 258160 641430 TRUE FALSE FALSE 323752.7443 188818.927 213286.2098 485782.5042 317809.0587 280769.2354 331207.1791 287747.8397 309970.344 481533.3056 0.672337179 0.392120181 0.442931376 1.008824309 0.65999393 0.583073345 0.6878178 0.59756581 0.643715274 1 18.87727606 -14 0.244508665 3.138510432 0.596132085 0.333817778 0.156229836 222.9536626 2.220796695 237.9551399 0.252333474 1.00E-14 14 -2.542378347 KPVNYSQFDHS(ph)DS(ph)DDDFVSATVPLNKK ddPTM_HeLa_A486_30min_R1 1 KPVNYSQFDHSDSDDDFVSATVPLNKK 27 2 Q96B01-3;Q96B01-2;Q96B01;F5H1Y0;H0YGT5;H0YFK6;F5H4V6;F5H031;F5H710 Q96B01-3 RAD51AP1 RAD51-associated protein 1 2 0 KPVNYSQFDHS(1)DS(1)DDDFVSATVPLNKK 143.06 4.31E-09 366450000 269240 326700 157020 168720 309310 431330 433780 422000 261170 381790 TRUE FALSE FALSE 250367.6664 300811.1022 217822.3491 392788.6866 270513.4556 378116.89 325243.6559 325919.8122 283808.4259 286187.299 0.874838497 1.051098715 0.761118156 1.372488185 0.945232219 1.321221771 1.136471315 1.13883395 0.991687706 1 18.12660012 -5.247297445 24.96241142 1.135815206 0.911226498 0.351977515 0.144692956 869.274517 1534383.777 0.036769991 0.06328085 5.66E-06 5.247297445 -0.224588708 KPVTVS(ph)PTTPT(ph)SPTEGEAS ddPTM_HeLa_A486_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVTVS(0.968)PT(0.027)T(0.006)PT(0.496)S(0.496)PT(0.007)EGEAS 170.09 1.04E-10 109010000 178900 178880 132330 67370 198010 165420 200730 200260 138260 182460 TRUE FALSE FALSE 166360.0338 164704.8973 183571.7199 156840.7647 173173.7394 145012.1623 150505.2309 154665.1696 150244.4881 136770.8284 1.216341495 1.204239963 1.342184749 1.146741352 1.266159908 1.060256518 1.100419093 1.130834488 1.098512672 1 17.06140103 -6.262475808 24.99993991 1.087582615 1.234453806 0.656053016 0.05667278 62.25497878 1501657.62 0.01878529 0.017534502 5.46E-07 6.262475808 0.146871191 KPVTVS(ph)PTTPTS(ph)PTEGEAS ddPTM_HeLa_A485_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVT(0.008)VS(0.943)PT(0.022)T(0.028)PT(0.052)S(0.938)PT(0.007)EGEAS(0.002) 97.129 0.00016553 133760000 70158 84102 70799 76123 98705 88342 99307 113010 73792 99886 TRUE FALSE FALSE 85764.40506 93936.99731 96990.49629 80281.40674 88877.58363 92967.45052 78089.24819 85294.12031 88601.37754 74986.25847 1.143734956 1.252722822 1.293443603 1.070614915 1.185251611 1.239793162 1.041380778 1.137463344 1.181568188 1 16.19433862 -14 0.10061007 0.432518587 1.291563697 0.371621404 0.071789026 198.2562537 1.352932818 23.40504638 1.212173643 1.00E-14 14 0.85904511 KPVTVS(ph)PTTPTS(ph)PTEGEAS ddPTM_HeLa_A486_30min_R1 2 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVTVS(0.726)PT(0.227)T(0.047)PT(0.009)S(0.973)PT(0.017)EGEAS;KPVT(0.001)VS(0.897)PT(0.042)T(0.063)PT(0.035)S(0.958)PT(0.003)EGEAS(0.001) ; 159.54 2.84E-10 419110000 662020 621080 463340 224833 701330 599990 656080 679410 489580 636460 TRUE FALSE FALSE 615615.8167 571863.3589 642757.6567 523422.5864 613362.6518 525969.3341 491921.8447 524723.1744 532017.1886 477086.2733 1.290365812 1.198658169 1.347256655 1.097123551 1.28564305 1.102461679 1.031096202 1.099849658 1.115138327 1 18.86389065 -6.375351141 4.903281933 1.06965525 1.238519636 0.61471381 0.069216414 0.161252213 5.882698239 0.023855929 0.020885998 4.21E-07 6.375351141 0.168864386 KPVTVSPT(ph)TPT(ph)SPTEGEAS ddPTM_HeLa_A485_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVTVS(0.101)PT(0.643)T(0.258)PT(0.812)S(0.182)PT(0.003)EGEAS 164.8 5.70E-12 392130000 268000 321560 288080 274160 392370 311220 401670 435040 292940 372160 TRUE FALSE FALSE 327615.6754 359163.6448 394652.78 289136.6666 353304.2651 327514.998 315849.9232 328345.7579 351730.371 279387.3611 1.172621675 1.285540059 1.412564901 1.034895299 1.264567816 1.172261324 1.130508989 1.17523483 1.25893444 1 18.09190723 -14 0.137553758 0.29889259 1.28826582 0.30537395 0.096298332 174.8158878 1.482203162 33.84838897 0.626092619 1.00E-14 14 0.98937323 KPVTVSPTTPTS(ph)PTEGEAS ddPTM_HeLa_A485_30min_R1 4 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 KPVTVSPTTPT(0.014)S(0.96)PT(0.025)EGEAS;KPVTVSPTTPT(0.044)S(0.955)PTEGEAS;KPVTVSPTTPT(0.004)S(0.969)PT(0.026)EGEAS;KPVTVSPTTPT(0.019)S(0.965)PT(0.015)EGEAS ;;; 257.46 1.33E-57 3044020000 1667500 1963950 1737460 1514480 2263220 1819750 2206420 2386850 1719980 1966390 TRUE FALSE FALSE 2038429.622 2193616.868 2380218.756 1597212.208 2037885.87 1915029.296 1735000.342 1801471.295 2065164.209 1476205.162 1.380857942 1.485983741 1.612390213 1.081971699 1.380489598 1.297265005 1.17531112 1.220339382 1.398968289 1 20.49346181 -1 0.034020836 2.06E-09 3.3022224 0.413826369 0.135735794 1049.62839 2.737143799 79.73070459 217.3203595 0.1 1 3.302222397 KPVTVSPTTPTS(ph)PTEGEAS ddPTM_HeLa_A486_30min_R1 5 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 KPVTVSPTTPT(0.001)S(0.996)PT(0.004)EGEAS;KPVTVSPTTPT(0.013)S(0.976)PT(0.01)EGEAS;KPVTVSPTTPT(0.009)S(0.99)PT(0.001)EGEAS;KPVTVSPTTPT(0.023)S(0.96)PT(0.015)EGEAS(0.002);KPVTVSPTTPT(0.001)S(0.333)PT(0.333)EGEAS(0.333) ;;;; 178.01 1.74E-13 4444260000 3196080 3109090 2537570 914324 3391410 2889360 3325230 3378110 2594860 3218820 TRUE FALSE FALSE 2972051.297 2862714.385 3520185.062 2128592.479 2966027.734 2532900.14 2493222.283 2608988.097 2819784.554 2412806.521 1.231781857 1.186466615 1.458958699 0.882206037 1.229285361 1.049773414 1.033328724 1.081308457 1.168674127 1 21.2022808 -5.259347254 24.99991738 1.071976016 1.281808801 0.475699257 0.109698937 170.3874238 2036037.381 0.028989732 0.047211406 5.50E-06 5.259347254 0.209832785 KPVVPSVPMAS(ph)PAPGR ddPTM_HeLa_A485_30min_R1 2 KPVVPSVPMASPAPGR 16 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 KPVVPSVPMAS(1)PAPGR;KPVVPSVPMAS(1)PAPGR ; 114.46 8.20E-05 364680000 569270 797130 751890 508080 871430 783530 752250 912140 669040 684640 TRUE FALSE FALSE 695902.1475 890347.4194 1030045.4 535835.1239 784667.3694 824554.4192 591525.6422 688436.2348 803310.1912 513971.8479 1.353969387 1.732288302 2.004089142 1.042537886 1.52667383 1.604279345 1.150891133 1.339443469 1.562945898 1 18.97132981 -11.64405812 0.093771403 1.33E-11 1.925780352 0.257906621 0.259184445 151.853976 1.675699077 38.80119584 6.630786971 2.27E-12 11.64405812 1.925780352 KPWWWHLR ddPTM_HeLa_A485_30min_R1 2 KPWWWHLR 8 1 P0DN79;P35520;P35520-2;H7C2H4 P0DN79 CBS Cystathionine beta-synthase 0 0 ; ; 73.26 0.021316 10675800 24581.9 24041.3 24485.9 14472.3 22541.3 23465.7 26310.5 25856.8 17167.7 19675.1 FALSE FALSE TRUE 30050.05885 26852.7209 33544.25335 15262.8851 20297.00902 24694.32777 20689.04674 19515.37926 20613.09992 14770.45966 2.03447012 1.818001709 2.271036523 1.033338532 1.374162314 1.671872665 1.400704325 1.321243868 1.395562521 1 13.8504271 -1 0.204795717 1.09409618 6.063415561 0.520311666 0.271518972 44.57781399 0.546088082 0.494835731 71.62881706 0.1 1 4.969319381 KQALYLMFDTSQES(ph)PVK ddPTM_HeLa_A485_30min_R1 1 KQALYLMFDTSQESPVK 17 1 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 KQALYLMFDTSQES(1)PVK 119.27 4.36E-06 0 166780 154180 94584 198680 193540 175470 257520 238350 123060 257540 TRUE FALSE FALSE 203879.6356 172210.0098 129574.5576 209533.3853 174270.478 184657.3379 202498.7483 179894.2888 147757.0132 193340.0177 1.05451338 0.890710634 0.670190058 1.083755902 0.90136786 0.95509114 1.047371107 0.930455531 0.76423399 1 17.56078075 -4.254528182 23.39660357 0.916180008 1.054513539 0.110977738 0.117687375 794.6425107 2689936.53 0.029415287 0.274592152 5.57E-05 4.254528182 0.138333531 KQALYLMFDTSQES(ph)PVK ddPTM_HeLa_A486_30min_R1 1 KQALYLMFDTSQESPVK 17 1 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 KQALYLMFDTSQES(1)PVK 134.29 4.94E-06 129280000 183060 161870 76000 84648 134340 163470 207030 194330 110040 240280 TRUE FALSE FALSE 170228.4393 149042.8317 105429.2354 197064.8219 117489.8245 143302.7334 155228.9043 150085.3012 119578.3558 180112.324 0.945123773 0.827499353 0.585352701 1.094121809 0.652314189 0.795629806 0.861844991 0.833287239 0.663909904 1 17.45853737 -10.20450858 3.911775372 1.00014226 0.806685335 0.144548232 0.141171539 182712677.8 421700876.3 360278.4811 0.033350824 6.24E-11 10.20450858 -0.193456926 KQDAET(ph)PPPPDPPAPETLLAPPPLPS(ph)TPDPPRR ddPTM_HeLa_A486_30min_R1 1 KQDAETPPPPDPPAPETLLAPPPLPSTPDPPRR 33 2 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 2 0 KQDAET(1)PPPPDPPAPET(0.001)LLAPPPLPS(0.52)T(0.479)PDPPRR 69.784 0.0069328 292190000 91924 94944 72725 40305 109220 84633 115620 100770 73353 103810 TRUE FALSE FALSE 85480.6023 87420.29166 100886.0676 93832.0769 95520.60916 74191.84095 86690.6531 77826.87079 79711.2971 77815.30031 1.09850636 1.123433198 1.296481119 1.205830685 1.227529917 0.95343513 1.114056654 1.000148692 1.024365347 1 16.24776623 -6.2537392 24.97364589 1.024388925 1.193393829 0.647602309 0.063326314 390.5357609 1266607.673 0.021844732 0.02144447 5.58E-07 6.2537392 0.169004904 KQDAETPPPPDPPAPET(ph)LLAPPPLPSTPDPPRR ddPTM_HeLa_A486_30min_R1 1 KQDAETPPPPDPPAPETLLAPPPLPSTPDPPRR 33 2 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KQDAETPPPPDPPAPET(0.619)LLAPPPLPS(0.19)T(0.19)PDPPRR 101.6 0.00013334 630950000 452120 428350 290180 154850 483920 408650 435390 426480 347590 438280 TRUE FALSE FALSE 420428.7228 394405.986 402545.4673 360498.6257 423222.2412 358234.9178 326450.8169 329379.814 377719.3811 328531.8353 1.279719886 1.200510707 1.225286027 1.097301957 1.288222923 1.090411581 0.993665703 1.002581116 1.149719268 1 18.32567365 -6.455902791 5.503811543 1.037038941 1.210232829 0.645158495 0.064205531 0.141568251 8.265296559 0.022678438 0.01964259 3.50E-07 6.455902791 0.173193888 KQDAETPPPPDPPAPETLLAPPPLPS(ph)TPDPPRR ddPTM_HeLa_A485_30min_R1 2 KQDAETPPPPDPPAPETLLAPPPLPSTPDPPRR 33 2 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KQDAETPPPPDPPAPETLLAPPPLPS(0.5)T(0.5)PDPPRR;KQDAETPPPPDPPAPETLLAPPPLPS(0.546)T(0.454)PDPPRR ; 125.68 1.58E-06 1324930000 452630 554800 475070 429490 654100 587640 657590 782870 475720 607830 TRUE FALSE FALSE 553315.9819 619679.0339 650818.1623 452951.9512 588975.5073 618407.9217 517090.5245 590869.905 571192.6404 456309.1673 1.212590107 1.358024511 1.426265806 0.992642672 1.290737836 1.355238873 1.133202139 1.294889403 1.251766744 1 18.79965211 -12.8631447 0.305701865 1.17E-09 1.272795884 0.30126728 0.117579305 170.3114473 3.009427963 107.7369734 0.116769653 1.37E-13 12.8631447 1.272795882 KQDAETPPPPDPPAPETLLAPPPLPS(ph)TPDPPRR ddPTM_HeLa_A486_30min_R1 1 KQDAETPPPPDPPAPETLLAPPPLPSTPDPPRR 33 2 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KQDAETPPPPDPPAPET(0.004)LLAPPPLPS(0.498)T(0.498)PDPPRR 92.956 7.97E-05 676250000 412730 446660 345780 157440 488280 426980 468940 480110 315280 477980 TRUE FALSE FALSE 383799.7583 411265.0349 479675.2763 366528.2766 427035.3694 374303.5488 351606.2521 370799.4337 342608.7243 358290.6969 1.07119655 1.147852954 1.338787974 1.02299133 1.191868427 1.044692346 0.981343516 1.034912257 0.956231148 1 18.45077106 -6.422606205 3.744461049 0.997017214 1.156968856 0.481423919 0.079585205 0.218220744 5.563986677 0.029697846 0.025417185 3.78E-07 6.422606205 0.159951642 KQDASEKDSVPMGS(ph)PAFLLSLFDGGTR ddPTM_HeLa_A485_30min_R1 1 KQDASEKDSVPMGSPAFLLSLFDGGTR 27 2 Q9H0E9-2;B5MCW3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 KQDAS(0.001)EKDS(0.004)VPMGS(0.995)PAFLLSLFDGGTR 136.91 1.12E-06 17969000 31301 30093 23327 36229 42210 36000 49300 61855 32654 50679 TRUE FALSE FALSE 38263.79946 33612.11458 31956.62802 38208.09853 38007.42419 37884.90433 38766.65226 46684.96427 39207.35828 38045.65798 1.005733676 0.883467822 0.839954668 1.004269621 0.998995055 0.995774718 1.018950764 1.227077326 1.030534373 1 15.21544419 -6.218910317 1.007676746 1.089018164 0.916130811 0.390636747 0.074921994 0.490332088 1.055373306 0.042335965 0.040124952 6.04E-07 6.218910317 -0.172887353 KQDASEKDSVPMGS(ph)PAFLLSLFDGGTR ddPTM_HeLa_A486_30min_R1 1 KQDASEKDSVPMGSPAFLLSLFDGGTR 27 2 Q9H0E9-2;B5MCW3 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 KQDASEKDS(0.002)VPMGS(0.998)PAFLLSLFDGGTR 117.05 8.25E-05 14340000 22435 20471 10606 10785 21744 24128 26715 26923 14948 27023 TRUE FALSE FALSE 20862.42235 18848.80341 14712.92724 25108.02504 19016.66477 21151.33268 20030.62444 20793.22062 16243.70468 20256.26491 1.029924443 0.930517225 0.726339594 1.239518991 0.938804111 1.044187207 0.988860707 1.026508131 0.801910162 1 14.30608056 -5.238168354 24.98766896 1.004905391 0.899086166 0.144158951 0.122824756 1641.510534 1762598.298 0.032565878 0.056361113 5.78E-06 5.238168354 -0.105819226 KQDDS(ph)PPRPIIGPALPPGFIK ddPTM_HeLa_A485_30min_R1 2 KQDDSPPRPIIGPALPPGFIK 21 2 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 0 KQDDS(1)PPRPIIGPALPPGFIK;KQDDS(1)PPRPIIGPALPPGFIK ; 169.44 4.60E-14 6426300000 2603310 2288190 1645250 3581970 3175840 3001770 4510300 4793900 2267930 4966400 TRUE FALSE FALSE 3182407.328 2555773.916 2253896.44 3777643.951 2859642.219 3158938.036 3546637.559 3618188.508 2723082.748 3728367.88 0.853565804 0.685494028 0.6045263 1.013216526 0.766995723 0.847271014 0.951257406 0.970448364 0.730368578 1 21.83011279 -5.258421388 24.99806154 0.890610222 0.711625246 0.383082435 0.105918377 280.8506905 2326280.324 0.028661775 0.047018757 5.52E-06 5.258421388 -0.178984975 KQDDS(ph)PPRPIIGPALPPGFIK ddPTM_HeLa_A486_30min_R1 2 KQDDSPPRPIIGPALPPGFIK 21 2 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 0 KQDDS(1)PPRPIIGPALPPGFIK;KQDDS(1)PPRPIIGPALPPGFIK ; 160.47 9.18E-14 5935300000 5064300 4898900 2332220 2456600 4757400 5696900 6824500 7037600 4089600 7790500 TRUE FALSE FALSE 4709318.722 4510693.323 3235318.043 5719088.95 4160682.531 4994074.4 5116937.918 5435292.11 4444089.821 5839708.092 0.806430501 0.772417602 0.554020508 0.979345005 0.712481252 0.855192472 0.876231797 0.930747226 0.761012323 1 22.47746482 -7.755091239 0.138454387 1.121046259 0.62353502 0.273184399 0.108663981 8.086625283 1.000708675 1.712051432 1.423763964 1.76E-08 7.755091239 -0.497511238 KQDSDPHLDRNT(ph)LPK ddPTM_HeLa_A486_30min_R1 1 KQDSDPHLDRNTLPK 15 2 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 KQDS(0.005)DPHLDRNT(0.995)LPK 50.387 0.034538 136330000 89636 80259 43797 52612 84367 98365 135090 124050 63507 140460 TRUE FALSE FALSE 83352.97928 73898.98454 60756.37132 122483.3949 73784.90417 86229.7264 101289.0532 95806.52299 69011.83789 105287.9018 0.791667209 0.701875366 0.577049882 1.163318794 0.700791857 0.818989884 0.962019866 0.90994807 0.655458384 1 16.68398015 -5.201954055 24.99999963 0.875974699 0.691365359 0.275235735 0.145708591 355.9699333 149603.1944 0.038359669 0.066440883 6.28E-06 5.201954055 -0.184609341 KQEAESWS(ph)PDACLGVK ddPTM_HeLa_A485_30min_R1 1 KQEAESWSPDACLGVK 16 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 KQEAES(0.001)WS(0.999)PDACLGVK 157.28 8.23E-09 233540000 242030 193250 155710 328200 314600 260500 398520 390490 228370 444560 TRUE FALSE FALSE 295868.7385 215848.9064 213313.6086 346128.735 283277.3194 274139.3772 313372.9464 294721.7152 274201.7643 333739.3735 0.88652632 0.646758889 0.639162249 1.037122864 0.84879802 0.821417546 0.938975054 0.883089436 0.821604479 1 18.34836238 -5.249017144 24.98070172 0.897720931 0.716410126 0.448563438 0.092508019 699.3763768 1406420.108 0.024709175 0.042418225 5.64E-06 5.249017144 -0.181310805 KQEAESWS(ph)PDACLGVK ddPTM_HeLa_A486_30min_R1 3 KQEAESWSPDACLGVK 16 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 KQEAESWS(1)PDACLGVK;KQEAESWS(1)PDACLGVK;KQEAES(0.004)WS(0.996)PDACLGVK ;; 187.86 4.08E-18 464780000 1022490 1030620 557670 460661 1031650 1206340 1406190 1403580 812200 1371370 TRUE FALSE FALSE 950818.7311 948949.9177 773614.7589 1072442.089 902250.8372 1057514.036 1054346.389 1084015.474 882602.15 1027970.026 0.924947914 0.923129949 0.752565483 1.043262023 0.877701503 1.028740147 1.025658689 1.054520508 0.858587437 1 19.97136677 -5.282939473 24.99846015 0.985501322 0.872505968 0.326659597 0.076953872 930.3533703 1081732.959 0.021360212 0.031715272 5.21E-06 5.282939473 -0.112995355 KQEEQMETEHINPVTEK(ac)R ddPTM_HeLa_A486_30min_R1 2 KQEEQMETEHINPVTEKR 18 2 V9GYT7 V9GYT7 PSIP1 0 1 ; KQEEQMETEHINPVTEK(1)R;KQEEQMETEHINPVTEK(1)R 143.71 1.90E-09 28024000 37386 45030 31832 17045.5 51860 46092 50733 55173 42277 56587 FALSE TRUE FALSE 34765.43446 41461.6588 44158.20289 39682.78543 45355.23522 40405.63767 38039.0668 42611.31232 45941.6044 42417.24688 0.819606104 0.977471709 1.041043588 0.935534207 1.069264004 0.952575677 0.896783021 1.004575154 1.083087842 1 15.37236336 -4.268975424 4.50833536 0.994025124 0.809087599 0.478928701 0.055292289 0.167142465 8.711869306 0.014053013 0.09729084 5.38E-05 4.268975424 -0.184937525 KQEGPATQVDSAVGTLPAT(ph)SPQSTSVQAK ddPTM_HeLa_A485_30min_R1 1 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06 E7ETY2 TCOF1 Treacle protein 1 0 KQEGPATQVDSAVGTLPAT(0.607)S(0.339)PQS(0.052)T(0.001)SVQAK 171.11 2.53E-14 1342200000 602720 511920 388340 919080 802170 711760 922270 974970 555160 1109700 TRUE FALSE FALSE 736792.9846 571784.5909 532003.1262 969287.0132 722303.1382 749026.653 725219.4802 735857.0788 666575.5198 833072.2125 0.884428713 0.686356575 0.638603855 1.163508996 0.867035447 0.899113716 0.870536154 0.883305274 0.800141344 1 19.66808203 -5.218600405 24.99999889 0.91545503 0.731452407 0.380478431 0.110315471 519.2986013 303051.9369 0.029704301 0.051448879 6.05E-06 5.218600405 -0.184002623 KQEGPATQVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_HeLa_A485_30min_R1 3 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06 E7ETY2 TCOF1 Treacle protein 1 0 KQEGPATQVDSAVGTLPAT(0.009)S(0.951)PQS(0.033)T(0.006)S(0.001)VQAK;KQEGPATQVDSAVGTLPAT(0.021)S(0.971)PQS(0.003)T(0.003)S(0.001)VQAK;KQEGPATQVDSAVGTLPAT(0.063)S(0.885)PQS(0.043)T(0.008)S(0.002)VQAK ;; 158.77 1.57E-10 2166040000 1306310 1221640 859740 1571060 1659750 1492290 2021410 2182110 1268920 2088420 TRUE FALSE FALSE 1596894.153 1364500.171 1177793.603 1656883.03 1494499.462 1570423.997 1589519.24 1646944.101 1523580.605 1567815.329 1.018547353 0.870319448 0.751232356 1.056810072 0.953236925 1.001663888 1.013843411 1.050470723 0.971785756 1 20.58032421 -5.286022993 24.99881121 1.006776971 0.879061651 0.431390352 0.066707133 697.5322115 709311.4131 0.018889295 0.028031572 5.18E-06 5.286022993 -0.12771532 KQEGPATQVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_HeLa_A486_30min_R1 1 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06 E7ETY2 TCOF1 Treacle protein 1 0 KQEGPATQVDSAVGTLPAT(0.066)S(0.933)PQS(0.001)TSVQAK 190.6 5.09E-21 1388300000 492250 451600 237270 197350 473760 475280 554310 575710 352330 576870 TRUE FALSE FALSE 457745.817 415813.5713 329147.2983 459440.7735 414336.6032 416644.7859 415615.7751 444633.4007 382870.2481 432417.9972 1.058572538 0.961600983 0.761178537 1.062492256 0.95818538 0.963523231 0.961143564 1.028249063 0.885417005 1 18.72206704 KQELEEICHDLEAR ddPTM_HeLa_A485_30min_R1 7 KQELEEICHDLEAR 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;;;;; ;;;;;; 217.48 1.76E-27 1663007000 1843624 1982477 1757363 1997789 2569332 2200426 2737932 2910817 1991174 2952142 FALSE FALSE TRUE 2253731.798 2214310.44 2407484.704 2106923.154 2313520.285 2315636.903 2152950.461 2196934.567 2390784.358 2216227.33 1.016922663 0.999135066 1.086298626 0.950680071 1.04390026 1.044855314 0.971448386 0.991294773 1.078763142 1 21.07967444 KQELEEICHDLEAR ddPTM_HeLa_A486_30min_R1 6 KQELEEICHDLEAR 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;;;; ;;;;; 225.6 8.91E-28 1185760000 1758860 1980689 1439694 747917.7 2365551 1979181 2264324 2271897 1607294 2044584 FALSE FALSE TRUE 1635572.997 1823731.99 1997182.073 1741190.203 2068841.536 1735009.771 1697766.186 1754635.648 1746615.538 1532606.858 1.06718366 1.189954214 1.303127454 1.136097097 1.349884039 1.13206447 1.107763662 1.144870022 1.139637036 1 20.54755624 -8.132670832 0.581220945 1.000315942 1.203029692 0.330490097 0.080291806 1.211740502 0.93251696 0.089722891 0.03771268 7.37E-09 8.132670832 0.20271375 KQELLEALTK ddPTM_HeLa_A486_30min_R1 1 KQELLEALTK 10 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 108.3 0.00023843 0 204150 192910 118640 86773 244820 218350 242210 219160 155810 235200 FALSE FALSE TRUE 189840.1392 177623.109 164580.5853 202011.9293 214112.3927 191412.197 181606.4962 169262.0522 169315.7363 176304.3891 1.07677489 1.007479791 0.933502485 1.145813387 1.214447319 1.085691615 1.030073596 0.960055805 0.960360301 1 17.42770887 -7.039078482 3.399692765 0.971041088 1.076438627 0.300068772 0.070930124 0.358995406 8.426722338 0.040609419 0.02318762 9.14E-08 7.039078482 0.105397539 KQEQANNPFYIKS(ph)SPSPQKR ddPTM_HeLa_A485_30min_R1 2 KQEQANNPFYIKSSPSPQKR 20 3 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617;O14617-4 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 KQEQANNPFYIKS(0.495)S(0.388)PS(0.117)PQKR;KQEQANNPFYIKS(0.589)S(0.396)PS(0.015)PQKR ; 124.51 4.08E-06 2070720000 424510 560590 280264 497720 640760 876390 1228230 1516040 366710 790240 TRUE FALSE FALSE 518940.785 626146.124 383945.3164 524909.1833 576963.6846 922276.4252 965808.6268 1144228.813 440305.3333 593247.7113 0.874745532 1.055454766 0.647192242 0.884806082 0.97255105 1.554622812 1.62800228 1.92875386 0.742194744 1 19.1782751 -6.164688715 4.594403672 1.443895145 0.871587124 0.347701377 0.325305886 0.228150977 8.096903313 0.107431452 0.107263688 6.84E-07 6.164688715 -0.572308021 KQEQANNPFYIKSS(ph)PS(ph)PQKR ddPTM_HeLa_A486_30min_R1 2 KQEQANNPFYIKSSPSPQKR 20 3 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617;O14617-4 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 2 0 KQEQANNPFYIKS(0.173)S(0.829)PS(0.998)PQKR;KQEQANNPFY(0.001)IKS(0.19)S(0.824)PS(0.985)PQKR ; 97.542 0.00018386 1391190000 539790 412880 170916 440450 413300 553230 1008110 833460 321910 1107260 TRUE FALSE FALSE 501953.5085 380161.8851 237099.2525 1025389.859 361460.0601 484978.1074 755870.2153 643699.3523 349813.418 829994.8889 0.604766987 0.458029188 0.285663509 1.235417076 0.43549673 0.584314571 0.910692614 0.775546164 0.421464545 1 19.66274293 -14 0.049929603 2.256221356 1.91E-15 0.140447439 0.265270175 1155.397505 4.256990452 199.3223134 44.57771473 1.00E-14 14 -2.256221356 KQEQANNPFYIKSS(ph)PSPQKR ddPTM_HeLa_A486_30min_R1 1 KQEQANNPFYIKSSPSPQKR 20 3 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617;O14617-4 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 KQEQANNPFYIKS(0.121)S(0.809)PS(0.07)PQKR 131.04 2.51E-06 783690000 332760 288750 142090 171370 388460 338470 538070 481640 212480 509680 TRUE FALSE FALSE 309435.2424 265868.3984 197111.0533 398958.0206 339735.7246 296713.0127 403439.1949 371981.0861 230897.9375 382052.8105 0.809927931 0.695894366 0.515926196 1.044248359 0.889237601 0.776628268 1.055977561 0.973637874 0.604361311 1 18.54341255 -5.264671641 24.99990492 0.90532309 0.676113986 0.353914141 0.143869497 315.8235208 2442740.693 0.039991848 0.062215004 5.44E-06 5.264671641 -0.229209104 KQETAAVCGET(ph)DEEAGES(ph)GGEGIFR ddPTM_HeLa_A485_30min_R1 1 KQETAAVCGETDEEAGESGGEGIFR 25 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 2 0 KQET(0.005)AAVCGET(0.995)DEEAGES(1)GGEGIFR 122.89 7.20E-06 224160000 105830 102640 112260 126950 168360 112450 173980 172330 115550 176930 TRUE FALSE FALSE 129371.5184 114642.8552 153789.6455 133884.957 151597.4873 118337.7081 136807.7517 130065.7973 138739.8251 132824.6072 0.974002643 0.863114581 1.157840018 1.007983083 1.14133586 0.890932115 1.029988002 0.979229678 1.044534052 1 17.01916292 -4.733377591 24.99999515 1.028749995 0.918558631 0.258201782 0.076447689 291.9373982 260080.1289 0.018787846 0.04968684 1.85E-05 4.733377591 -0.110191364 KQETAAVCGET(ph)DEEAGES(ph)GGEGIFR ddPTM_HeLa_A486_30min_R1 1 KQETAAVCGETDEEAGESGGEGIFR 25 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 2 0 KQET(0.001)AAVCGET(0.999)DEEAGES(1)GGEGIFR 76.891 0.0058916 158890000 277420 356500 246090 153880 341230 349240 354370 383680 260910 357440 TRUE FALSE FALSE 257974.2906 328249.6416 341382.6385 358240.4167 298429.7516 306154.3196 265702.8779 296324.4397 283525.8889 267934.6975 0.962825245 1.225110614 1.274126277 1.337043765 1.113815248 1.142645288 0.991670285 1.105957692 1.058190266 1 18.0315219 -6.343805753 2.117038512 1.0503246 1.203631349 0.307657964 0.099166413 0.407620336 3.589418928 0.041820348 0.036377517 4.53E-07 6.343805753 0.153306749 KQFKDLFDLNS(ph)S(ph)EEDDTEGFSER ddPTM_HeLa_A485_30min_R1 2 KQFKDLFDLNSSEEDDTEGFSER 23 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 KQFKDLFDLNS(1)S(1)EEDDTEGFSER;KQFKDLFDLNS(1)S(1)EEDDTEGFSER ; 191.51 2.23E-21 447540000 235979 329094 190759 252880 449890 528490 789500 1221530 273021 437610 TRUE FALSE FALSE 288471.7144 367578.6806 261328.6922 266694.1941 405097.3719 556160.9192 620816.8754 921947.8522 327813.8104 328521.8806 0.878089806 1.118886449 0.795468149 0.8118004 1.233090993 1.692918956 1.889727632 2.806351438 0.997844679 1 18.32562994 -6.15361903 2.503593398 1.818847351 0.912088873 0.342546264 0.490250927 0.287054586 3.517512251 0.174608424 0.173190364 7.02E-07 6.15361903 -0.906758478 KQFS(ph)LENVQEGEILHDAK ddPTM_HeLa_A486_30min_R1 1 KQFSLENVQEGEILHDAK 18 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 KQFS(1)LENVQEGEILHDAK 169.6 2.42E-12 108280000 74930 67125 30528 37391 64030 71624 100290 98892 47452 101570 TRUE FALSE FALSE 69677.79394 61805.77053 42349.25917 87048.13764 55998.76034 62787.7591 75196.38124 76376.4504 51565.17757 76136.21089 0.915172861 0.811778913 0.556230192 1.143321116 0.735507582 0.824676699 0.987655944 1.003155391 0.677275333 1 16.21629515 -5.253498401 24.98929354 0.902740494 0.766132515 0.162796209 0.154234632 1216.838775 3829234.461 0.041333745 0.069967453 5.58E-06 5.253498401 -0.136607978 KQFY(ph)S(ph)T(ph)AK ddPTM_HeLa_A485_30min_R1 2 KQFYSTAK 8 1 C9JF76;Q5FBZ4;Q3BDU3;Q5FBZ9;E9PC65;P54277-2;P54277-3;P54277 C9JF76 PMS1 PMS1 protein homolog 1 3 0 KQFY(1)S(1)T(1)AK;KQFY(1)S(1)T(1)AK ; 45.718 0.026187 3446070000 1151950 743210 1166430 1806360 2248930 831140 1424930 1069900 1271590 2497780 TRUE FALSE FALSE 1408197.303 830121.9444 1597940.996 1905036.873 2025018.633 874657.2052 1120482.065 807505.3475 1526786.449 1875129.414 0.750986728 0.442701148 0.85217638 1.015949544 1.079935399 0.466451648 0.597549191 0.430639795 0.814229907 1 20.83855874 -6.282298844 24.98749717 0.622175057 0.818670859 0.109726284 0.222578933 1672.878399 2003930.022 0.08200208 0.072390313 5.22E-07 6.282298844 0.196495802 KQGGLGPMNIPLVSDPKR ddPTM_HeLa_A485_30min_R1 4 KQGGLGPMNIPLVSDPKR 18 2 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 170.11 1.68E-14 842968000 401130 491789 342370 399427 586725 619824 765150 957729 458924 551958 FALSE FALSE TRUE 490359.9846 549299.4456 469026.9102 421246.6856 528308.5989 652277.0262 601669.4518 722844.4611 551025.8373 414365.0286 1.183400989 1.325641421 1.131917217 1.016607717 1.274983559 1.574160417 1.452027585 1.744463 1.329807776 1 18.66054272 -6.056003259 5.656407823 1.466279585 1.169972 0.264851174 0.19363855 0.239605581 16.6692258 0.061631872 0.062724834 8.79E-07 6.056003259 -0.296307586 KQGGLGPMNIPLVSDPKR ddPTM_HeLa_A486_30min_R1 4 KQGGLGPMNIPLVSDPKR 18 2 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 236.16 2.80E-45 1204389000 922505 720796 476454 376097.8 955279 787327 980730 1073197 571081 1084503 FALSE FALSE TRUE 857842.1633 663677.4999 660949.7487 875574.6853 835459.0002 690194.5997 735340.9809 828853.4708 620582.7609 812936.3899 1.055238976 0.816395364 0.813039934 1.077051903 1.027705255 0.849014275 0.904549224 1.019579737 0.763384157 1 19.63278294 -4.219491045 22.30753153 0.921971883 1.055240665 0.137148857 0.102290783 14311.74731 7610128.312 0.025683383 7.751422445 6.03E-05 4.219491045 0.133268782 KQGGS(ph)PDEPDSK ddPTM_HeLa_A485_30min_R1 6 KQGGSPDEPDSK 12 1 V9GZ50;Q9ULX6-2;Q9ULX6 V9GZ50 AKAP8L A-kinase anchor protein 8-like 1 0 KQGGS(1)PDEPDSK;KQGGS(0.999)PDEPDS(0.001)K;KQGGS(0.99)PDEPDS(0.01)K;KQGGS(0.74)PDEPDS(0.26)K;KQGGS(1)PDEPDSK;KQGGS(1)PDEPDSK ;;;;; 191.95 6.66E-13 1596560000 1999000 1464530 683632.9 3826543 1332998 1984344 2969986 3587789 1577489 5015516 TRUE FALSE FALSE 2443670.654 1635794.044 936537.158 4035577.355 1200280.039 2088241.183 2335424.229 2707878.122 1894076.573 3765240.165 0.649007911 0.434446137 0.248732383 1.071798127 0.318779145 0.554610355 0.620259034 0.719178061 0.503042698 1 21.84431046 -13.99999985 0.21802045 3.171023399 0.512576716 0.263005067 0.21709902 206.002687 2.060597915 196.0471928 0.415973244 1.00E-14 13.99999985 -2.658446684 KQGGS(ph)PDEPDSK ddPTM_HeLa_A486_30min_R1 4 KQGGSPDEPDSK 12 1 V9GZ50;Q9ULX6-2;Q9ULX6 V9GZ50 AKAP8L A-kinase anchor protein 8-like 1 0 KQGGS(0.583)PDEPDS(0.417)K;KQGGS(0.976)PDEPDS(0.024)K;KQGGS(0.931)PDEPDS(0.069)K;KQGGS(0.659)PDEPDS(0.341)K ;;; 159 7.94E-07 171273000 595320 241851 184759 359208 280067 870080 700100 530250 451123 1061120 TRUE FALSE FALSE 553591.1422 222685.846 256302.6328 836254.3774 244938.3853 762738.3759 524927.5751 409523.6503 490226.7049 795408.6453 0.695983311 0.279964075 0.322227618 1.051351884 0.307940311 0.958926434 0.659947033 0.514859441 0.616320564 1 19.60133672 -5.207344107 24.9999952 0.698739088 0.417448795 0.233813735 0.241490243 469.362002 216913.5183 0.062139209 0.107628168 6.20E-06 5.207344107 -0.281290292 KQHSDLEEEHR ddPTM_HeLa_A485_30min_R1 1 KQHSDLEEEHR 11 1 F8W785;O00461 F8W785 GOLIM4 Golgi integral membrane protein 4 0 0 59.542 0.030897 47424000 18346 23071 24424 18161 29388 20022 27496 24155 19589 27228 FALSE FALSE TRUE 22427.00441 25768.95276 33459.45397 19153.08944 26462.02753 21070.32096 21621.25498 18230.94838 23520.33262 20440.56069 1.097181469 1.260677393 1.636914685 0.937013898 1.29458423 1.030809344 1.057762324 0.891900601 1.15066964 1 14.31914715 -6.013354073 1.172332192 1.012722686 1.29035095 0.268803789 0.176944284 0.608856594 1.759122407 0.080823892 0.091821697 9.70E-07 6.013354073 0.277628264 KQHSDLEEEHR ddPTM_HeLa_A486_30min_R1 1 KQHSDLEEEHR 11 1 F8W785;O00461 F8W785 GOLIM4 Golgi integral membrane protein 4 0 0 59.542 0.030897 24459000 13740 16558 12907 5765.1 17360 13336 16317 15452 14342 16026 FALSE FALSE TRUE 12776.89695 15245.88378 17904.93606 13421.44415 15182.54692 11690.73991 12234.31402 11933.91691 15585.17611 12012.98529 1.063590494 1.269116994 1.490465162 1.117244701 1.263844628 0.973175246 1.018424124 0.993418091 1.297360792 1 13.55230709 -6.248803843 24.15765406 1.053686062 1.249422951 0.314543629 0.135764201 597.2897174 1141947.448 0.045366313 0.045046691 5.64E-07 6.248803843 0.19573689 KQHYLS(ph)S(ph)EDEPDDNPDVLDSR ddPTM_HeLa_A485_30min_R1 2 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 KQHY(0.034)LS(0.987)S(0.978)EDEPDDNPDVLDSR;KQHY(0.005)LS(0.998)S(0.997)EDEPDDNPDVLDSR ; 164.7 6.98E-14 726590000 595820 652500 538840 830000 873910 789860 1021610 1062470 711640 1133640 TRUE FALSE FALSE 728358.1034 728804.199 738179.339 875340.7983 786900.4519 831215.8482 803334.6777 801897.5666 854459.6205 851044.4111 0.855840299 0.856364473 0.867380514 1.028548906 0.924629128 0.976700907 0.943939784 0.94225114 1.004012963 1 19.69887489 -5.164302662 7.214846318 0.968527678 0.858056139 0.748181594 0.030314664 0.129244233 8.373029689 0.007863774 0.013717084 6.85E-06 5.164302662 -0.110471539 KQHYLS(ph)S(ph)EDEPDDNPDVLDSR ddPTM_HeLa_A486_30min_R1 3 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 KQHY(0.183)LS(0.908)S(0.908)EDEPDDNPDVLDSR;KQHY(0.074)LS(0.973)S(0.952)EDEPDDNPDVLDSR;KQHY(0.059)LS(0.97)S(0.97)EDEPDDNPDVLDSR ;; 136.01 2.51E-07 1016410000 961540 1057710 660930 442704 1039440 1022110 1273020 1216530 920030 1275000 TRUE FALSE FALSE 894141.0114 973893.2075 916859.7963 1030637.285 909063.7428 896012.4603 954496.9314 939552.6757 999778.9412 955731.7011 0.935556506 1.019002725 0.959327597 1.078375117 0.95117044 0.937514638 0.998708037 0.983071582 1.046087453 1 19.86624615 -7.73884578 24.43024497 1.023043719 0.98440927 0.127169902 0.041969237 335.402621 362670.8976 0.027891472 0.01052303 1.82E-08 7.73884578 -0.038634449 KQIFILLFQR ddPTM_HeLa_A485_30min_R1 1 KQIFILLFQR 10 1 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 159.4 1.47E-06 0 27486 26574 24045 32430 30274 25559 37393 37951 20281 52166 FALSE FALSE TRUE 33600.16587 29681.59814 32940.2461 34201.56878 27259.81426 26897.22972 29403.68008 28643.45775 24351.21067 39161.97624 0.857979323 0.757918802 0.84112829 0.87333613 0.696078617 0.68682003 0.750822172 0.731409916 0.621807503 1 15.25716595 -4.258826252 22.62144357 0.764298734 0.857979424 0.051527375 0.102767555 192.7539357 1668229.673 0.025024546 0.16338397 5.51E-05 4.258826252 0.09368069 KQIFILLFQR ddPTM_HeLa_A486_30min_R1 2 KQIFILLFQR 10 1 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 ; ; 161.63 9.25E-07 0 42659 43749 31898 35540 51627 39130 50843 48771 28684 55440 FALSE FALSE TRUE 39668.82439 40282.16991 44249.75986 82738.91609 45151.46026 34302.53844 38121.54364 37666.90796 31170.35222 41557.46315 0.95455356 0.969312534 1.064784915 1.990952042 1.086482592 0.825424264 0.91732124 0.906381312 0.750054259 1 15.34281997 -6.003281832 24.99340713 0.885175099 1.253146258 0.274573083 0.280366223 197.4543701 1503768.718 0.094040022 0.104553139 9.92E-07 6.003281832 0.367971158 KQIS(ph)VR ddPTM_HeLa_A485_30min_R1 4 KQISVR 6 1 P11217-2;P11217;P11216 P11217-2 PYGM;PYGB "Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form" 1 0 KQIS(1)VR;KQIS(1)VR;KQIS(1)VR;KQIS(1)VR ;;; 120.46 0.0037251 5992520000 8527600 8984700 7367000 7558600 8684700 6801600 7952300 9057200 5135100 7008600 TRUE FALSE FALSE 10424535.2 10035382.51 10092359.87 7971507.179 7820020.774 7157721.259 6253226.141 6835907.499 6165667.468 5261485.004 1.98129144 1.90732892 1.91815806 1.515067927 1.486276359 1.360399441 1.188490728 1.299235386 1.17184929 1 22.32703861 -5.407493228 0.449003129 1.076009458 2.245614884 0.948034492 0.075067237 0.412174241 0.131236709 0.065574663 0.233648488 3.91E-06 5.407493228 1.169605426 KQIS(ph)VR ddPTM_HeLa_A486_30min_R1 2 KQISVR 6 1 P11217-2;P11217;P11216 P11217-2 PYGM;PYGB "Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form" 1 0 KQIS(1)VR;KQIS(1)VR ; 107.9 0.0056328 2109790000 5121200 5095900 3465600 2001690 3977200 3875400 4215900 4779200 3264230 4714200 TRUE FALSE FALSE 4762230.326 4692082.325 4807573.132 4660035.48 3478342.49 3397292.55 3161037.229 3691080.489 3547176.085 3533733.636 1.347648356 1.327797398 1.360479772 1.318728563 0.984325037 0.961388973 0.894531834 1.044527084 1.003804036 1 21.75276187 -5.75282336 5.632200663 0.976946608 1.342201258 0.957806255 0.03675304 0.031619718 3.240011009 0.011833254 0.014565863 1.77E-06 5.75282336 0.36525465 KQISGQYSGS(ph)PQLLK ddPTM_HeLa_A485_30min_R1 2 KQISGQYSGSPQLLK 15 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 KQISGQYSGS(1)PQLLK;KQISGQYS(0.001)GS(0.999)PQLLK ; 218.25 1.01E-33 1695210000 2157100 2350600 1542600 1956450 2804700 2745400 3352800 4660600 1968460 2751100 TRUE FALSE FALSE 2636939.453 2625482.222 2113271.933 2063325.91 2525454.22 2889144.899 2636446.89 3517580.542 2363511.866 2065301.4 1.276781903 1.271234417 1.023226892 0.999043485 1.222801776 1.398897468 1.276543409 1.703180244 1.144390773 1 20.97792091 -6.039748342 5.869099018 1.344267327 1.139198597 0.12141523 0.190909655 0.326288292 30.50531048 0.061857898 0.063537269 9.13E-07 6.039748342 -0.20506873 KQISGQYSGS(ph)PQLLK ddPTM_HeLa_A486_30min_R1 2 KQISGQYSGSPQLLK 15 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 KQISGQYSGS(1)PQLLK;KQISGQYS(0.002)GS(0.998)PQLLK ; 191.8 1.83E-18 1239550000 2556400 1995020 1271110 863960 2365000 1951240 2501500 2567600 1509480 2586500 TRUE FALSE FALSE 2377209.561 1836927.349 1763317.834 2011342.542 2068359.647 1710515.848 1875598.242 1983013.53 1640322.942 1938823.565 1.226109278 0.947444307 0.909478235 1.037403598 1.066811692 0.882244201 0.967389852 1.022792154 0.846040337 1 20.88675009 -4.258880502 24.82318961 0.966404149 1.22610938 0.580049986 0.066784907 154.5302363 1498971.881 0.01648638 0.108839754 5.51E-05 4.258880502 0.259705231 KQIT(ph)MEELVR ddPTM_HeLa_A485_30min_R1 19 KQITMEELVR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR ;;;;;;;;;;;;;;;;;; 192.39 3.80E-10 55890450000 28516300 27184950 23936430 30021130 34986900 30316390 39800030 42816440 24628310 37820250 TRUE FALSE FALSE 34859652.55 30363993.42 32791511.53 31661108.31 31503481.39 31903709.3 31296428.45 32315640.96 29570985.91 28392357.71 1.227782945 1.06944248 1.154941477 1.115127833 1.109576095 1.12367242 1.102283536 1.13818096 1.041512164 1 24.75899932 -14 0.095806072 0.596930379 1.211268703 0.546413514 0.040051109 153.5313262 1.008095046 12.32662671 0.731381908 1.00E-14 14 0.614338323 KQIT(ph)MEELVR ddPTM_HeLa_A486_30min_R1 21 KQITMEELVR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR;KQIT(1)MEELVR ;;;;;;;;;;;;;;;;;;;; 192.39 3.80E-10 42629680000 34790560 30758430 18209450 13708615 33880020 39662340 47509620 52814640 31521010 43870790 TRUE FALSE FALSE 32351921.4 28321019.99 25260636.71 31914348.52 29630471.97 34769203.75 35622210.57 40789899.41 34253276.53 32885258.63 0.983781875 0.861207154 0.768144687 0.970475825 0.901025967 1.057288438 1.08322732 1.240370339 1.04159973 1 24.97093768 -6.31756401 1.861838912 1.113022903 0.88336886 0.567332046 0.081310529 0.234116978 1.599247948 0.033944118 0.029847289 4.81E-07 6.31756401 -0.229654043 KQITT(ph)SPITVR ddPTM_HeLa_A486_30min_R1 1 KQITTSPITVR 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 KQIT(0.129)T(0.542)S(0.327)PIT(0.001)VR 79.614 0.0064152 140100000 188240 206430 164470 63791 220340 170460 190420 184100 139870 188470 TRUE FALSE FALSE 175045.3481 190071.735 228157.1887 148508.6718 192702.9026 149430.3783 142774.9019 142184.4489 151994.0442 141275.8853 1.239032038 1.345394047 1.614976174 1.051196186 1.364018369 1.057720346 1.010610563 1.00643113 1.075866868 1 17.1081557 -6.125696318 1.192226252 1.013041175 1.363501385 0.534432051 0.1342971 0.358697691 1.05896803 0.06345227 0.064686667 7.49E-07 6.125696318 0.35046021 KQITTS(ph)PITVR ddPTM_HeLa_A485_30min_R1 4 KQITTSPITVR 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 KQIT(0.021)T(0.128)S(0.851)PITVR;KQIT(0.012)T(0.211)S(0.776)PIT(0.001)VR;KQIT(0.001)T(0.013)S(0.986)PITVR;KQIT(0.002)T(0.014)S(0.983)PITVR ;;; 169.04 2.36E-08 1759420000 1202800 1296450 1127910 1276490 1593140 1337980 1559170 1501670 1251430 1450970 TRUE FALSE FALSE 1470358.71 1448058.55 1545170.845 1346221.416 1434521.388 1408034.564 1226040.592 1133383.078 1502580.522 1089269.882 1.349857124 1.329384548 1.418538115 1.235893362 1.316956809 1.292640683 1.125561821 1.040497949 1.379438234 1 20.05493002 -6.777377651 0.088084092 0.690182544 1.768719316 0.496656674 0.097740882 16.10945194 0.903241303 4.579511251 5.930003618 1.67E-07 6.777377651 1.078536772 KQITTS(ph)PITVR ddPTM_HeLa_A486_30min_R1 3 KQITTSPITVR 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 KQIT(0.001)T(0.045)S(0.953)PIT(0.001)VR;KQIT(0.002)T(0.014)S(0.983)PITVR;KQIT(0.029)T(0.152)S(0.817)PIT(0.002)VR ;; 162.37 4.02E-08 1216630000 1319550 1418570 1079120 516522 1495310 1276380 1500690 1402520 1061430 1427430 TRUE FALSE FALSE 1227056.359 1306157.347 1496984.164 1202489.32 1307754.277 1118913.213 1125201.489 1083196.813 1153435.607 1069992.237 1.146789964 1.220716657 1.399060771 1.123829948 1.222209126 1.04572087 1.051597806 1.012340815 1.077985024 1 20.0291689 -6.19139105 1.67604185 1.03166798 1.239690407 0.615071814 0.072391973 0.250338567 1.396062152 0.030209629 0.028974673 6.44E-07 6.19139105 0.208022427 KQKVEGTEPTTAFNLFVGNLNFNK ddPTM_HeLa_A485_30min_R1 1 KQKVEGTEPTTAFNLFVGNLNFNK 24 2 P19338 P19338 NCL Nucleolin 0 0 92.932 0.00012145 17993000 6242.2 8103.2 5255.3 4612.9 9623.3 12706 15721 30426 6207.5 7704 FALSE FALSE TRUE 7630.755855 9050.798752 7199.454161 4864.891047 8665.170463 13371.26651 12362.07992 22963.97579 7453.288311 5783.534582 1.31939314 1.564925155 1.244819074 0.841162265 1.498248232 2.311954104 2.137461054 3.970578108 1.288708178 1 12.49773574 -6.199148202 3.685833742 2.33489545 1.257110088 0.219735704 0.76630766 0.298092509 8.115235383 0.257856394 0.252114635 6.32E-07 6.199148202 -1.077785362 KQLATK(ac)AAR ddPTM_HeLa_A485_30min_R1 3 KQLATKAAR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 1 ;; KQLATK(1)AAR;KQLATK(1)AAR;KQLATK(1)AAR 172.27 4.56E-06 93006863000 14777553 27197368 21703164 15509105 26072775 16519598 22690173 92755940 25932161 87893140 FALSE TRUE FALSE 18064768.68 30377863.6 29732067.51 16356328.14 23476877.97 17384538.61 17842232.18 70007400.28 31136507.85 65982997.75 0.273779145 0.460389261 0.450601951 0.247887012 0.35580193 0.263469973 0.270406511 1.060991508 0.471886833 1 25.97559099 -7.248801954 24.99720216 0.824829381 0.336352194 0.678113526 0.161630575 415.2552282 821389.1755 0.072055557 0.041241404 5.64E-08 7.248801954 -0.488477187 KQLATK(ac)AAR ddPTM_HeLa_A486_30min_R1 1 KQLATKAAR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 1 KQLATK(1)AAR 167.09 1.35E-05 33583000000 1078700 981210 721010 295920 1010400 780310 938680 900190 636680 703000 FALSE TRUE FALSE 1003088.7 903455.3461 1000204.381 688916.715 883666.2104 684043.2858 703812.3357 695236.388 691867.935 526964.2242 1.90352334 1.714452907 1.898049878 1.307331092 1.676899815 1.298082971 1.335597946 1.319323696 1.312931511 1 19.00734549 -1 0.14117012 0.898526288 4.545924899 0.778553479 0.134396019 32.23006624 0.303157721 0.53787152 23.76447155 0.1 1 3.647398611 KQMVIDVLHPGK ddPTM_HeLa_A486_30min_R1 1 KQMVIDVLHPGK 12 1 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4 E7ETK0 RPS24 40S ribosomal protein S24 0 0 53.967 0.033162 6507800 89338 91957 73528 24905 95200 80617 101400 84312 80980 75700 FALSE FALSE TRUE 83075.86754 84669.99242 102000.0107 57980.09863 83259.1283 70671.29419 76028.6475 65115.99812 87999.4116 56744.22728 1.464040864 1.492134028 1.797539867 1.021779684 1.467270457 1.245435837 1.339848142 1.147535199 1.550808176 1 15.79218601 -1 0.036048321 3.07E-09 3.474075063 0.282769154 0.202151375 1212.264831 3.344987731 93.82002813 271.3057344 0.1 1 3.47407506 KQNHHQPPTQQQPPLPEREETGDEEDGS(ph)PIALHR ddPTM_HeLa_A486_30min_R1 2 KQNHHQPPTQQQPPLPEREETGDEEDGSPIALHR 34 2 P79522-2 P79522-2 1 0 KQNHHQPPTQQQPPLPEREETGDEEDGS(1)PIALHR;KQNHHQPPTQQQPPLPEREETGDEEDGS(1)PIALHR ; 171.24 8.33E-15 903370000 695870 572990 624810 305000 1002370 800100 884260 922690 687490 841250 TRUE FALSE FALSE 647093.1065 527584.1856 866753.165 710055.4138 876643.4079 701391.7968 663008.7953 712613.6292 747082.1867 630595.5244 1.026161908 0.836644355 1.374499392 1.126007697 1.390183365 1.11226891 1.051401048 1.130064521 1.184724848 1 19.26635541 -4.745616848 24.99999996 1.175620557 0.931403104 0.366827113 0.125878824 246.4714915 389425.0123 0.031412303 0.082508198 1.80E-05 4.745616848 -0.244217452 KQNS(ph)PVAPTAQPK ddPTM_HeLa_A485_30min_R1 2 KQNSPVAPTAQPK 13 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 KQNS(1)PVAPTAQPK;KQNS(1)PVAPTAQPK ; 141.1 4.25E-07 3179900000 4339300 3211800 2400400 5900600 4695400 4582400 6474800 5574400 4003300 8437800 TRUE FALSE FALSE 5304562.315 3587392.071 3288407.849 6222934.837 4227909.489 4822327.378 5091406.086 4207269.66 4806725.59 6334411.746 0.837419878 0.566333894 0.519133896 0.982401379 0.667451006 0.761290483 0.803769362 0.66419264 0.758827462 1 22.59477922 -14 0.230326141 2.472643736 0.694471406 0.292081055 0.12707024 210.4876799 2.107239219 144.5801681 0.222022742 1.00E-14 14 -1.77817233 KQNS(ph)PVAPTAQPK ddPTM_HeLa_A486_30min_R1 3 KQNSPVAPTAQPK 13 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 KQNS(1)PVAPTAQPK;KQNS(1)PVAPTAQPK;KQNS(1)PVAPTAQPK ;; 152.32 2.82E-08 5074100000 5695100 5481500 2446350 2536180 4660800 6356000 7413300 7005400 4393350 7598500 TRUE FALSE FALSE 5295902.9 5047125.977 3393642.236 5904355.211 4076199.004 5571861.343 5558413.93 5410423.347 4774169.115 5695786.142 0.929793143 0.886115779 0.595816302 1.036618136 0.715651694 0.978242723 0.975881782 0.949899314 0.838193183 1 22.44146355 -6.296952893 24.93171907 0.947027019 0.833918572 0.192534793 0.118384782 1028.499556 722039.1512 0.04044654 0.035672039 5.05E-07 6.296952893 -0.113108447 KQPAFPASYIPPS(ph)PPTPPVPVPPPTLPK ddPTM_HeLa_A486_30min_R1 1 KQPAFPASYIPPSPPTPPVPVPPPTLPK 28 1 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 KQPAFPASYIPPS(0.801)PPT(0.198)PPVPVPPPTLPK 80.112 0.0028477 48543000 40013 42872 21787 15614 43901 33038 42009 44474 34595 45737 TRUE FALSE FALSE 37208.29533 39474.66658 30223.50988 36350.18109 38394.52722 28962.10747 31497.90387 34348.24106 37593.72245 34284.1575 1.085291226 1.151396723 0.881559066 1.060261758 1.119891227 0.844766492 0.918730579 1.001869189 1.096533361 1 15.06525445 -6.231808005 24.99771574 0.969143597 1.054912075 0.189470869 0.089887009 1338.828974 1129468.068 0.031157954 0.031153897 5.86E-07 6.231808005 0.085768479 KQPPKEPSEVPT(ph)PK ddPTM_HeLa_A485_30min_R1 3 KQPPKEPSEVPTPK 14 2 P17096-2 P17096-2 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPKEPSEVPT(1)PK;KQPPKEPSEVPT(1)PK;KQPPKEPSEVPT(1)PK ;; 105.77 0.00035312 9949100000 3534100 2260320 1087560 5856200 3405330 3179530 6177300 6105400 2123360 8087200 TRUE FALSE FALSE 4320248.352 2524644.762 1489893.701 6176109.377 3066283.388 3346005.274 4857469.391 4608041.077 2549498.875 6071209.874 0.711595949 0.415838822 0.245403096 1.017278188 0.505053103 0.551126603 0.800082602 0.758998811 0.419932588 1 22.53355262 -14 0.158578639 2.408092309 0.499939873 0.22442523 0.215229318 203.1421421 1.858057219 90.61064716 0.943090849 1.00E-14 14 -1.908152436 KQPPKEPSEVPT(ph)PK ddPTM_HeLa_A486_30min_R1 4 KQPPKEPSEVPTPK 14 2 P17096-2 P17096-2 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPKEPSEVPT(1)PK;KQPPKEPSEVPT(1)PK;KQPPKEPSEVPT(1)PK;KQPPKEPSEVPT(1)PK ;;; 126.07 0.00013516 11170850000 6858370 5514080 1764650 4849670 4321470 7491580 10851900 9067800 4025480 12274200 TRUE FALSE FALSE 6377633.68 5077124.219 2447969.739 11290276.85 3779430.936 6567345.028 8136639.84 7003259.889 4374411.848 9200660.428 0.693171292 0.551821715 0.266064568 1.227115916 0.410778222 0.713790611 0.88435389 0.76116926 0.475445418 1 23.13330599 -14 0.132564543 2.01290652 0.547586949 0.123251194 0.256450199 313.07988 2.595638483 85.87042327 1.822535292 1.00E-14 14 -1.465319571 KQPPVS(ph)PGTALVGSQK ddPTM_HeLa_A485_30min_R1 2 KQPPVSPGTALVGSQK 16 1 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVS(0.984)PGT(0.016)ALVGSQK;KQPPVS(0.952)PGT(0.048)ALVGSQK ; 199.73 2.40E-25 7080300000 3345900 2627250 1925360 3353600 2859580 2717050 3223400 2684710 2422560 4269100 TRUE FALSE FALSE 4090183.912 2934484.033 2637630.785 3536798.676 2574870.175 2859310.537 2534694.257 2026280.663 2908745.571 3204891.937 1.276231459 0.915626514 0.823001473 1.103562537 0.803418719 0.892170654 0.790882909 0.632246173 0.907595522 1 21.61184428 -1.411356226 1.03274724 0.848495216 199.9631197 0.491843195 0.121417519 659.6807555 1.993508452 0.038432602 309455.7302 0.038783212 1.411356226 199.1146245 KQPPVS(ph)PGTALVGSQK ddPTM_HeLa_A486_30min_R1 4 KQPPVSPGTALVGSQK 16 1 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVS(0.924)PGT(0.076)ALVGSQK;KQPPVS(0.976)PGT(0.024)ALVGSQK;KQPPVS(0.999)PGT(0.001)ALVGSQK;KQPPVS(0.993)PGT(0.007)ALVGSQK ;;; 139.2 1.90E-06 551430000 786240 777078 401626 256258 611114 800710 797440 732570 594598 894230 TRUE FALSE FALSE 731128.6361 715499.5092 557146.3431 596581.5746 534462.3837 701926.5412 597912.0775 565779.8029 646138.2334 670308.9875 1.090733751 1.067417449 0.831178387 0.89000981 0.797337338 1.047168626 0.89199472 0.844058208 0.963940877 1 19.35446675 -4.703231261 8.313303758 0.902513711 1.081136975 0.461259963 0.073677465 0.223081956 28.27300409 0.018342084 0.04862877 1.98E-05 4.703231261 0.178623264 KQPPVS(ph)PGTALVGSQKEPS(ph)EVPTPK ddPTM_HeLa_A485_30min_R1 1 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 KQPPVS(0.92)PGT(0.08)ALVGSQKEPS(0.518)EVPT(0.482)PK 167.32 4.18E-14 2456000000 988430 585790 356020 1445200 1092300 984420 1658800 1788400 597350 2040400 TRUE FALSE FALSE 1208302.843 654293.0448 487726.6132 1524147.617 983546.7767 1035962.709 1304383.829 1349792.096 717232.6658 1531765.831 0.788830002 0.427149524 0.318408077 0.995026515 0.642099959 0.676319244 0.851555638 0.88120003 0.468239108 1 20.54676433 -5.256856981 24.99901484 0.77477068 0.503031245 0.306720766 0.189537482 485.1660833 2646788.167 0.050707745 0.084188871 5.54E-06 5.256856981 -0.271739436 KQPPVS(ph)PGTALVGSQKEPSEVPT(ph)PK ddPTM_HeLa_A485_30min_R1 1 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 KQPPVS(0.926)PGT(0.074)ALVGS(0.012)QKEPS(0.381)EVPT(0.608)PK 93.968 0.013403 2236800000 471320 361970 186670 838550 651130 529500 924680 976710 339420 1132900 TRUE FALSE FALSE 576163.508 404299.2428 255727.001 884357.8632 586301.2109 557223.8012 727114.5641 737170.3411 407538.4807 850488.8795 0.677449784 0.475372756 0.300682357 1.039822959 0.689369638 0.655180585 0.85493718 0.866760705 0.479181434 1 19.69793285 -5.252870836 24.99411306 0.784250236 0.483588757 0.395304472 0.177060077 667.5496432 1947212.745 0.047180654 0.080086577 5.59E-06 5.252870836 -0.300661479 KQPPVS(ph)PGTALVGSQKEPSEVPT(ph)PK ddPTM_HeLa_A486_30min_R1 3 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 KQPPVS(0.999)PGT(0.001)ALVGSQKEPSEVPT(1)PK;KQPPVS(0.997)PGT(0.003)ALVGSQKEPSEVPT(1)PK;KQPPVS(0.749)PGT(0.251)ALVGSQKEPS(0.33)EVPT(0.67)PK ;; 246.13 1.21E-48 9438200000 2440980 1851730 764543 1955360 1750600 2753900 4341100 3723220 1394210 4534410 TRUE FALSE FALSE 2269879.907 1704992.171 1060594.525 4552176.898 1531023.424 2414151.818 3254910.865 2875524.083 1515061.245 3398964.222 0.667815181 0.5016211 0.312034625 1.339283559 0.450438229 0.710261027 0.957618454 0.846000103 0.44574204 1 21.69666375 KQPPVS(ph)PGTALVGSQKEPSEVPTPK ddPTM_HeLa_A485_30min_R1 2 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVS(1)PGTALVGSQKEPSEVPTPK;KQPPVS(0.786)PGT(0.214)ALVGSQKEPSEVPTPK ; 181.9 1.39E-20 3297500000 1301930 1344210 749440 1534850 1670230 1798860 2508000 2884300 1224260 2400300 TRUE FALSE FALSE 1591539.837 1501403.666 1026689.043 1618694.969 1503936.037 1893045.528 1972145.312 2176920.903 1469957.752 1801949.384 0.883232265 0.833210788 0.56976575 0.898302129 0.834616138 1.050554219 1.094451003 1.208092148 0.815759735 1 20.78112706 -6.12600135 2.20722865 1.053506944 0.78167133 0.453151619 0.125285677 0.271892792 2.606817824 0.046740668 0.047097004 7.48E-07 6.12600135 -0.271835614 KQPPVS(ph)PGTALVGSQKEPSEVPTPK ddPTM_HeLa_A486_30min_R1 1 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVS(0.998)PGT(0.002)ALVGSQKEPSEVPTPK 183.49 1.24E-20 1289000000 1013500 884920 353640 505480 839400 972970 1204700 1232000 646940 1211700 TRUE FALSE FALSE 942458.8837 814795.7164 490578.8788 1176782.986 734114.6249 852934.8538 903271.318 951500.4944 703017.2801 908282.4332 1.037627559 0.897073076 0.540117106 1.295613504 0.808244879 0.93906347 0.994482867 1.047582183 0.774007351 1 19.79278145 -5.253958878 24.9886997 0.973598175 0.832152682 0.138662258 0.176179171 1281.170679 4279755.511 0.046901686 0.079230934 5.57E-06 5.253958878 -0.141445492 KQPPVSPGTALVGSQKEPSEVPT(ph)PK ddPTM_HeLa_A485_30min_R1 2 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVSPGTALVGSQKEPSEVPT(1)PK;KQPPVSPGTALVGSQKEPS(0.001)EVPT(0.999)PK ; 233.44 1.64E-39 8752600000 1522000 933870 567330 2171700 1522400 1701400 2751900 3209900 1018400 3323300 TRUE FALSE FALSE 1860563.649 1043077.973 777208.9756 2290334.472 1370824.511 1790482.673 2163934.084 2422666.992 1222783.539 2494862.471 0.745758001 0.41809037 0.311523775 0.918020331 0.549458949 0.717667885 0.86735606 0.971062341 0.490120619 1 21.25052886 -5.857583723 0.957243524 0.822256047 0.513190288 0.243729503 0.201806359 0.791799126 1.572981531 0.09944456 0.140455366 1.39E-06 5.857583723 -0.309065759 KQPPVSPGTALVGSQKEPSEVPT(ph)PK ddPTM_HeLa_A486_30min_R1 2 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVSPGTALVGSQKEPSEVPT(1)PK;KQPPVSPGTALVGSQKEPS(0.01)EVPT(0.99)PK ; 244.31 2.95E-49 8428700000 4651200 3582880 1438290 3169600 3345370 4722700 7509700 6751600 2774080 8274400 TRUE FALSE FALSE 4325174.899 3298959.54 1995234.407 7378988.983 2925762.5 4140061.291 5630693.63 5214408.066 3014539.488 6202436.383 0.697334827 0.531881238 0.32168559 1.189692006 0.471711811 0.667489521 0.907819651 0.840703192 0.486025056 1 22.5644036 -14 0.051498681 2.132208207 0.12452237 0.135542742 0.239190677 1071.229269 4.063722097 167.7803763 35.8265963 1.00E-14 14 -2.007685837 KQS(ph)AGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_A486_30min_R1 2 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 2 0 KQS(1)AGPNS(0.876)PT(0.105)GGGGGGGS(0.014)GGT(0.005)R;KQS(1)AGPNS(0.958)PT(0.042)GGGGGGGSGGTR ; 71.118 0.0029901 182850000 472750 492910 305025 239857 530580 506640 613800 603500 416680 654250 TRUE FALSE FALSE 439612.6663 453850.0165 423138.8489 558399.2177 464029.7089 444135.9079 460220.7479 466096.2243 452798.1579 490421.5415 0.896397546 0.925428388 0.862806408 1.138610706 0.946185413 0.905620717 0.938418705 0.950399166 0.923283583 1 18.90366282 KQS(ph)FDDNDS(ph)EELEDKDSK ddPTM_HeLa_A486_30min_R1 1 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 KQS(1)FDDNDS(1)EELEDKDSK 127.83 3.81E-05 572000000 583140 437570 99057 733480 360090 911190 1386600 1237800 365290 2333200 TRUE FALSE FALSE 542264.8973 402895.3596 137414.5232 1707578.508 314924.1545 798776.6421 1039658.014 955979.961 396953.6313 1748951.533 0.310051415 0.230363936 0.078569658 0.976344098 0.180064541 0.456717426 0.594446441 0.546601746 0.226966628 1 20.73805888 -14 0.168092142 3.192949047 0.270090821 0.342787518 0.248177655 155.6972571 1.460963461 114.7101594 0.92251221 1.00E-14 14 -2.922858226 KQS(ph)LGELIGTLNAAK ddPTM_HeLa_A485_30min_R1 2 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 0 KQS(1)LGELIGTLNAAK;KQS(1)LGELIGTLNAAK ; 283.64 7.84E-59 4985720000 2159500 1638200 1268620 2465230 2438040 2407840 3748000 3777360 1728470 3486380 TRUE FALSE FALSE 2639873.325 1829773.24 1737935.33 2599899.273 2195300.177 2533910.779 2947209.182 2850956.537 2075358.075 2617289.628 1.008628658 0.699109957 0.66402102 0.993355586 0.838768531 0.968143056 1.126053896 1.089278201 0.792941695 1 21.31964215 -5.89285946 1.403907165 1.007327889 0.799035707 0.251930249 0.131195328 0.526403939 2.158720459 0.053479348 0.06601236 1.28E-06 5.89285946 -0.208292182 KQS(ph)LGELIGTLNAAK ddPTM_HeLa_A486_30min_R1 2 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 0 KQS(1)LGELIGTLNAAK;KQS(1)LGELIGTLNAAK ; 256.4 1.72E-50 5413580000 2813690 2884320 1529250 1529210 2938800 3259400 4452700 4104400 2459260 4195000 TRUE FALSE FALSE 2616464.861 2655755.979 2121416.555 3560078.162 2570188.301 2857288.367 3338587.364 3169917.718 2672430.637 3144544.695 0.832064771 0.844559781 0.674633933 1.132144239 0.817348313 0.90864931 1.061707715 1.008068902 0.849862507 1 21.58441971 -5.250437428 24.96971105 0.96371322 0.789833534 0.424110277 0.098347451 739.314289 1677923.193 0.026490381 0.045314665 5.62E-06 5.250437428 -0.173879686 KQS(ph)LYLK ddPTM_HeLa_A485_30min_R1 1 KQSLYLK 7 1 A0A494BZT8;Q9Y6A5;A0A494C117;H0Y8F2 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 KQS(1)LYLK 94.692 0.0033784 463770000 432280 245020 218030 477980 441510 543160 858950 890870 282450 659700 TRUE FALSE FALSE 528439.1947 273672.9576 298688.37 504090.8371 397551.7142 571599.0177 675428.3155 672382.7357 339135.1242 495248.9309 1.067017336 0.552596766 0.603107551 1.017853458 0.80273109 1.154165071 1.363815797 1.357666203 0.684777095 1 18.91779434 -6.257320798 7.825907364 1.150511586 0.794224557 0.288318487 0.233961325 0.148870801 87.21397398 0.08062712 0.076392476 5.53E-07 6.257320798 -0.356287029 KQS(ph)LYLK ddPTM_HeLa_A486_30min_R1 2 KQSLYLK 7 1 A0A494BZT8;Q9Y6A5;A0A494C117;H0Y8F2 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 KQS(1)LYLK;KQS(1)LYLK ; 111.06 0.0014101 403570000 592050 931790 673340 516770 1113540 1457780 1784670 1574330 945850 1391390 TRUE FALSE FALSE 550550.3523 857951.5669 934075.2807 1203066.676 973869.4299 1277933.925 1338126.69 1215889.426 1027837.04 1042976.888 0.527864384 0.822598829 0.895585791 1.153493131 0.933740183 1.225275402 1.282987864 1.165787508 0.985484004 1 19.99227576 -4.141532388 0.790579442 1.13506515 0.080581464 0.738846815 0.108617725 1.50606096 0.639492208 0.042334072 1.462490655 7.22E-05 4.141532388 -1.054483686 KQS(ph)PVPALPIVVQLMEMGFSR ddPTM_HeLa_A485_30min_R1 2 KQSPVPALPIVVQLMEMGFSR 21 1 O95714 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 0 KQS(1)PVPALPIVVQLMEMGFSR;KQS(1)PVPALPIVVQLMEMGFSR ; 215.71 1.23E-35 1623150000 129935.4 128428 105268.1 162734.6 167366.8 124228.2 163896.7 140378 110323.7 214180.5 TRUE FALSE FALSE 158839.0815 143446.5374 144211.1508 171624.3791 150703.1737 130732.5965 128878.8311 105950.0754 132464.6546 160789.243 0.987871318 0.892140138 0.896895514 1.067387195 0.937271492 0.813068051 0.801538888 0.658937584 0.823840278 1 17.29481137 -6.263818482 4.084314915 0.79501931 0.957144756 0.350089341 0.090814391 0.216182496 8.723064148 0.031707197 0.029565842 5.45E-07 6.263818482 0.162125446 KQS(ph)PVPALPIVVQLMEMGFSR ddPTM_HeLa_A486_30min_R1 2 KQSPVPALPIVVQLMEMGFSR 21 1 O95714 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 0 KQS(1)PVPALPIVVQLMEMGFSR;KQS(1)PVPALPIVVQLMEMGFSR ; 84.948 0.0009969 1143900000 15571.2 12464.9 7710.3 2986 16196.7 13141.7 14852 12026.1 12013.2 10692.6 TRUE FALSE FALSE 14479.73929 11477.13593 10695.93465 6951.558904 14165.15886 11520.41067 11135.87251 9288.019558 13054.51385 8015.103363 1.806556776 1.431938605 1.334472453 0.867307456 1.76730832 1.437337754 1.389361061 1.158814695 1.628739301 1 12.96850541 -11.19228971 2.02773269 0.000148135 1.407413242 0.186014754 0.264288506 3886973.141 701154.1677 17837294.81 0.067944995 6.42E-12 11.19228971 1.407265107 KQS(ph)SDYEELIQVLKK ddPTM_HeLa_A485_30min_R1 2 KQSSDYEELIQVLKK 15 2 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;F8WCI3 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 KQS(0.882)S(0.117)DY(0.001)EELIQVLKK;KQS(0.977)S(0.023)DYEELIQVLKK ; 72.184 0.0039068 142114000 95949 76372 46783 109656 111918 117197 151626 177530 72881 133647 TRUE FALSE FALSE 117292.524 85303.04105 64089.9785 115646.2296 100775.051 123333.2537 119229.8664 133990.4891 87507.5482 100331.2625 1.169052608 0.850213971 0.638783734 1.152644019 1.004423232 1.229260458 1.188362067 1.335480944 0.872186256 1 16.61441168 -5.311254771 24.99930725 1.129358319 0.882436083 0.260515595 0.172488923 438.3176049 219963.9231 0.048349841 0.071714526 4.88E-06 5.311254771 -0.246922236 KQS(ph)SDYEELIQVLKK ddPTM_HeLa_A486_30min_R1 1 KQSSDYEELIQVLKK 15 2 A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8;F8WCI3 A0A0A0MRG9 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 KQS(0.987)S(0.013)DYEELIQVLKK 234.49 2.34E-41 74952000 100580 96170 42763 50424 96330 106780 144410 135490 69000 142110 TRUE FALSE FALSE 93529.8614 88549.13895 59321.97883 117389.6203 84247.39316 93606.56926 108277.0906 104641.8847 74980.97556 106524.731 0.878010773 0.831254283 0.556884568 1.101994055 0.790871682 0.878730867 1.01645026 0.982324797 0.703883266 1 16.70082888 -5.26690139 24.99802372 0.920464257 0.762970319 0.252059366 0.133465598 666.1914128 3048963.442 0.03681484 0.05641728 5.41E-06 5.26690139 -0.157493938 KQSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_A485_30min_R1 4 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 KQSAGPNS(0.999)PT(0.001)GGGGGGGSGGTR;KQSAGPNS(0.995)PT(0.005)GGGGGGGSGGTR;KQS(0.014)AGPNS(0.969)PT(0.009)GGGGGGGS(0.004)GGT(0.004)R;KQS(0.001)AGPNS(0.752)PT(0.207)GGGGGGGS(0.02)GGT(0.02)R ;;; 140.55 8.55E-08 1333890000 691997 945776 783152 634732 947331 991418 1200373 1424320 720575 941085 TRUE FALSE FALSE 845929.3453 1056376.276 1072872.514 669405.8019 853011.3994 1043327.113 943903.5024 1075003.287 865187.793 706489.8289 1.197369461 1.495246262 1.518595839 0.947509468 1.207393744 1.476775844 1.336046839 1.521611838 1.224628802 1 19.43030927 KQSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_A486_30min_R1 4 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 KQS(0.005)AGPNS(0.986)PT(0.008)GGGGGGGS(0.001)GGT(0.001)R;KQSAGPNS(0.886)PT(0.114)GGGGGGGSGGTR;KQSAGPNS(0.998)PT(0.002)GGGGGGGSGGTR;KQSAGPNS(0.936)PT(0.064)GGGGGGGSGGTR ;;; 174.19 1.51E-14 891745000 619169 597404 447585 224846 694234 535307 638596 660317 492844 696727 TRUE FALSE FALSE 575768.4505 550063.5313 620901.8987 523452.8511 607156.6982 469266.2649 478812.5264 509977.2337 535564.1147 522262.0243 1.102451306 1.053232871 1.188870471 1.002280133 1.16255188 0.898526493 0.916805175 0.976477726 1.025470147 1 18.99441428 -6.262320249 24.99982354 0.959070094 1.098474637 0.574024924 0.059525142 58.81735545 1669270.992 0.019913184 0.018583459 5.47E-07 6.262320249 0.139404542 KQSEEPFTTVLENGAGMVSSTSFNGGVS(ph)PHNWGDSGPPCKK ddPTM_HeLa_A485_30min_R1 1 KQSEEPFTTVLENGAGMVSSTSFNGGVSPHNWGDSGPPCKK 41 2 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 KQSEEPFTTVLENGAGMVSSTSFNGGVS(1)PHNWGDSGPPCKK 195.51 1.68E-23 273880000 154530 143970 82936 135550 148650 154200 232350 269190 119020 184930 TRUE FALSE FALSE 188904.6654 160806.0391 113617.4777 142954.7533 133849.8841 162273.6736 182706.5244 203170.7304 142906.2223 138830.3544 1.36068705 1.158291642 0.818390749 1.029708192 0.964125494 1.168863065 1.316041619 1.463446026 1.029358622 1 17.08296351 -6.494970423 7.107911049 1.241348801 1.056215757 0.099276916 0.180825739 0.356305668 68.88269947 0.066915833 0.057058755 3.20E-07 6.494970423 -0.185133044 KQSFDDNDS(ph)EELEDK ddPTM_HeLa_A485_30min_R1 1 KQSFDDNDSEELEDK 15 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KQSFDDNDS(1)EELEDK 108.18 0.00015721 74935000 38271 37288 28046 30781 29630 29148 37465 29386 24125 56634 TRUE FALSE FALSE 46784.25192 41648.50724 38421.38249 32462.48809 26679.93316 30674.14421 29460.29669 22179.03742 28966.66621 42516.18607 1.100386847 0.9795918 0.903688361 0.763532459 0.627524141 0.721469799 0.692919554 0.52166103 0.681309141 1 15.37572456 -4.990883771 1.298422435 0.681079481 1.091700767 0.565347793 0.116732242 0.351345892 1.052534687 0.03638147 0.136031418 1.02E-05 4.990883771 0.410621286 KQSFDDNDS(ph)EELEDK ddPTM_HeLa_A486_30min_R1 1 KQSFDDNDSEELEDK 15 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KQSFDDNDS(1)EELEDK 83.063 0.0017418 138650000 68851 66213 40952 41921 44638 90205 103300 75359 48192 170720 TRUE FALSE FALSE 64024.90045 60966.04074 56809.71113 97594.20657 39039.08581 79076.42424 77453.2474 58201.40078 52369.32136 127970.6008 0.500309446 0.476406615 0.44392783 0.762629901 0.305062925 0.61792649 0.605242508 0.454802903 0.409229315 1 16.96545289 -10.78727126 2.844027565 1.121280328 0.51154744 0.599256904 0.120580284 62063746.98 47385258.04 52106208.59 0.030583519 1.63E-11 10.78727126 -0.609732888 KQSFDDNDS(ph)EELEDKDSK ddPTM_HeLa_A485_30min_R1 5 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KQSFDDNDS(1)EELEDKDSK;KQS(0.015)FDDNDS(0.985)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK;KQS(0.002)FDDNDS(0.998)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK ;;;; 206.32 9.57E-26 11008310000 5115166 2252179 1190419 12431490 3739875 3962703 9461100 7760650 2289997 15230300 TRUE FALSE FALSE 6253017.03 2515551.743 1630804.526 13110590.82 3367519.914 4170184.002 7439658.695 5857338.419 2749578.393 11433666.5 0.546895174 0.220012692 0.142631808 1.146665492 0.294526687 0.364728497 0.65068005 0.512288724 0.240480898 1 23.44678478 -10.47136986 3.109339491 1.01221059 0.461419529 0.257942953 0.275897529 186231229.6 225195317.3 19663722.31 0.068107721 3.38E-11 10.47136986 -0.550791061 KQSFDDNDS(ph)EELEDKDSK ddPTM_HeLa_A486_30min_R1 8 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KQSFDDNDS(1)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK;KQS(0.01)FDDNDS(0.989)EELEDKDSK;KQS(0.003)FDDNDS(0.997)EELEDKDSK;KQSFDDNDS(1)EELEDKDSK;KQS(0.035)FDDNDS(0.965)EELEDKDSK;KQSFDDNDS(0.999)EELEDKDSK;KQS(0.031)FDDNDS(0.969)EELEDKDSK ;;;;;;; 228.63 6.18E-35 26918840000 2770900 2202191 612089 3116700 1675789 3739760 6230190 4929630 1707952 8124810 TRUE FALSE FALSE 2576674.219 2027681.365 849106.2531 7255835.109 1465595.918 3278386.434 4671330.566 3807260.862 1855998.655 6090304.692 0.423078048 0.332935948 0.139419339 1.19137473 0.240644104 0.538295964 0.767010979 0.625134711 0.304746437 1 22.53808298 -14 0.11664784 2.408826105 0.288166309 0.200674388 0.290256367 270.4364669 2.05964885 92.52547359 3.054716799 1.00E-14 14 -2.120659797 KQSLGELIGTLNAAK ddPTM_HeLa_A485_30min_R1 3 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ;; ;; 148.03 1.20E-06 300281000 792209 867691 626625 803587 1058092 1144944 1422026 1700220 735979 1093270 FALSE FALSE TRUE 968433.159 969159.9145 858439.6635 847484.923 952744.6453 1204891.497 1118198.528 1283238.379 883683.2345 820737.9091 1.179954219 1.18083971 1.045936412 1.032588983 1.160839087 1.468058785 1.362430705 1.56351786 1.076693576 1 19.64656207 -6.077913231 6.900972827 1.332859492 1.108608029 0.207294404 0.163965614 0.320791024 24.22883736 0.052195997 0.052439952 8.36E-07 6.077913231 -0.224251462 KQSLGELIGTLNAAK ddPTM_HeLa_A486_30min_R1 2 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 152.94 9.43E-08 243880000 992980 1087470 744430 533360 1593450 1148810 1336170 1363610 902190 1516130 FALSE FALSE TRUE 923377.2298 1001294.917 1032693.233 1241689.035 1393584.643 1007081.502 1001846.133 1053145.77 980392.5556 1136481.18 0.81248792 0.881048393 0.908676053 1.092573337 1.226227647 0.886140062 0.881533413 0.926672425 0.862656217 1 20.11614236 -4.846709881 2.900160276 0.981557348 0.838781039 0.208753927 0.105771006 0.455108982 7.598648893 0.032224252 0.085929223 1.42E-05 4.846709881 -0.142776309 KQTDFEHR ddPTM_HeLa_A485_30min_R1 1 KQTDFEHR 8 1 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 132.9 0.00070142 38721000 115180 108280 101910 140830 126070 113420 139520 125270 121840 179670 FALSE FALSE TRUE 140801.3936 120942.4041 139610.7498 148523.1863 113518.0281 119358.4958 109710.4122 94547.33608 146292.1704 134881.5756 1.043889004 0.896656223 1.035061677 1.101137688 0.84161256 0.884913268 0.813383235 0.700965537 1.084597135 1 17.04133377 -5.777724913 24.98878649 0.86878384 1.011567988 0.248110253 0.109017331 309.6262202 475093.5577 0.033212055 0.037768514 1.67E-06 5.777724913 0.142784149 KQTDFEHR ddPTM_HeLa_A486_30min_R1 1 KQTDFEHR 8 1 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 147.51 0.00039229 41904000 99192 98283 100550 39646 108440 130830 122350 104770 118430 126140 FALSE FALSE TRUE 92239.15303 90494.69714 139485.6528 92297.8916 94838.44404 114689.5248 91736.73591 80916.15811 128695.6078 94553.72297 0.975521113 0.95707175 1.475200007 0.976142332 1.00301121 1.212956203 0.97020755 0.855769139 1.361084511 1 16.52884664 KQTETEMLYGSAPRT(ph)PSK ddPTM_HeLa_A485_30min_R1 2 KQTETEMLYGSAPRTPSK 18 2 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 KQTETEMLYGSAPRT(1)PSK;KQTETEMLYGS(0.011)APRT(0.989)PSK ; 169.6 2.86E-12 1086720000 834230 1305870 847740 929300 2196830 2222620 3319100 4932300 1271720 1666240 TRUE FALSE FALSE 1019801.585 1458580.137 1161354.303 980065.3059 1978105.892 2338992.946 2609947.17 3722645.691 1526942.539 1250877.033 0.815269254 1.166045981 0.92843203 0.783502519 1.581375179 1.869882398 2.086493797 2.976028493 1.220697558 1 20.25450854 -5.968262192 2.899393355 1.966356332 0.940461348 0.396556832 0.514212928 0.238140919 4.088344059 0.169819967 0.188314223 1.08E-06 5.968262192 -1.025894984 KQTETEMLYGSAPRT(ph)PSK ddPTM_HeLa_A486_30min_R1 2 KQTETEMLYGSAPRTPSK 18 2 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 KQTETEMLYGS(0.014)APRT(0.986)PSK;KQTETEMLYGS(0.001)APRT(0.999)PSK ; 149.93 3.30E-08 714850000 711660 581800 533250 501410 1352460 803640 1402090 1510660 526600 985970 TRUE FALSE FALSE 661776.309 535696.0491 739738.6809 1167307.82 1182821.856 704495.0676 1051272.252 1166715.695 572246.112 739076.6944 0.895409521 0.724817943 1.000895694 1.57941365 1.600404754 0.953209691 1.422412938 1.578612483 0.774271623 1 19.49536456 -5.032657744 6.505620494 1.30342526 0.820626582 0.315017319 0.276400671 0.197211152 27.63205422 0.073691383 0.134443717 9.28E-06 5.032657744 -0.482798679 KQVAPEK(ac)PVKK ddPTM_HeLa_A485_30min_R1 2 KQVAPEKPVKK 11 3 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ; KQVAPEK(0.997)PVK(0.003)K;KQVAPEK(0.999)PVK(0.001)K 145.17 0.00042752 127338000 434950 386870 277120 469410 483900 561910 735030 870850 454530 761920 FALSE TRUE FALSE 531703.1269 432111.0812 379638.2199 495052.6797 435721.2169 591330.7387 577984.8359 657272.6721 545750.0018 571987.3661 0.929571453 0.755455639 0.663717841 0.865495829 0.761767205 1.033817832 1.010485319 1.149103479 0.954129469 1 19.12562376 -6.266004473 24.40561324 1.037637336 0.789594063 0.678824389 0.080440037 157.563842 842354.5889 0.027617315 0.025181616 5.42E-07 6.266004473 -0.248043274 KQVAPEK(ac)PVKK ddPTM_HeLa_A486_30min_R1 2 KQVAPEKPVKK 11 3 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ; KQVAPEK(0.998)PVK(0.002)K;KQVAPEK(0.993)PVK(0.007)K 142.83 0.00051436 160061000 441810 396730 207182 156566 378030 432800 501190 496960 322150 548150 FALSE TRUE FALSE 410841.4005 365291.6699 287408.4189 364493.5604 330613.9524 379405.5364 375786.961 383813.0566 350074.2214 410889.6721 0.999882519 0.889026166 0.699478323 0.887083772 0.804629502 0.923375695 0.914569011 0.934102467 0.851990802 1 18.64839154 -6.288307296 23.46482986 0.920049111 0.850882728 0.158957132 0.078289019 695.766303 607637.4016 0.028088134 0.024780959 5.15E-07 6.288307296 -0.069166383 KQVSS(ph)PCAQR ddPTM_HeLa_A485_30min_R1 2 KQVSSPCAQR 10 1 Q6NSI8-3;Q6NSI8-2;Q6NSI8 Q6NSI8-3 KIAA1841 Uncharacterized protein KIAA1841 1 0 KQVS(0.202)S(0.798)PCAQR;KQVS(0.02)S(0.98)PCAQR ; 124.12 7.16E-05 179117000 346710 382140 365710 392170 479060 413310 481800 485440 411650 604480 TRUE FALSE FALSE 423834.4434 426827.9488 501001.3475 413593.2541 431363.1043 434950.2725 378859.4941 366385.0789 494264.3791 453794.2606 0.933979294 0.940575908 1.10402751 0.911411382 0.950569766 0.9584746 0.834870616 0.807381474 1.089181645 1 18.79167884 KQVSS(ph)PCAQR ddPTM_HeLa_A486_30min_R1 2 KQVSSPCAQR 10 1 Q6NSI8-3;Q6NSI8-2;Q6NSI8 Q6NSI8-3 KIAA1841 Uncharacterized protein KIAA1841 1 0 KQVS(0.062)S(0.938)PCAQR;KQVS(0.036)S(0.964)PCAQR ; 84.892 0.0026622 183688000 456420 504730 357190 166616 523970 486880 498380 483680 421100 521630 TRUE FALSE FALSE 424427.315 464733.3566 495503.5339 387890.4683 458248.7968 426813.6958 373680.0527 373556.6227 457601.2871 391010.4528 1.085462836 1.188544586 1.267238588 0.992020713 1.171960477 1.091565949 0.955677911 0.955362242 1.170304486 1 18.57684765 -6.548981576 6.389079812 1.016861459 1.141573203 0.298908237 0.087070735 0.216369199 29.77975936 0.033332539 0.026143531 2.82E-07 6.548981576 0.124711744 KQVVAK(ac)APVK ddPTM_HeLa_A485_30min_R1 1 KQVVAKAPVK 10 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R349;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 KQVVAK(1)APVK 112.13 0.0022743 0 64829 73268 56238 71636 92968 89331 95085 116060 69825 99496 FALSE TRUE FALSE 79249.98739 81836.05525 77042.77646 75549.29329 83711.77949 94008.23303 74769.31298 87596.10302 83838.23703 74693.47829 1.06100277 1.095625175 1.031452521 1.011457694 1.120737465 1.258586897 1.001015279 1.172740981 1.122430485 1 16.18869466 -5.789938483 21.06820368 1.122944111 1.051835286 0.137797329 0.074103392 65.20193347 48199.72256 0.022370748 0.025378846 1.62E-06 5.789938483 -0.071108825 KQVVAK(ac)APVK ddPTM_HeLa_A486_30min_R1 1 KQVVAKAPVK 10 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R349;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 KQVVAK(1)APVK 117.67 0.0017927 0 70204 74378 46564 25344 82140 75133 78781 81822 58605 85645 FALSE TRUE FALSE 65283.06213 68484.0164 64594.82783 59002.11281 71837.23527 65863.85436 59069.16054 63192.91676 63684.92859 64198.93454 1.016887003 1.066746931 1.006166664 0.919051278 1.118978621 1.025933761 0.920095652 0.984329681 0.991993544 1 15.97026173 -6.651580523 21.76975488 0.972798961 1.026018362 0.195180104 0.051223803 6.221760307 1201.61568 0.019965312 0.015465034 2.23E-07 6.651580523 0.0532194 KQYQDS(ph)PNQK ddPTM_HeLa_A485_30min_R1 1 KQYQDSPNQK 10 1 H0Y9T5;Q8IU60 H0Y9T5 DCP2 m7GpppN-mRNA hydrolase 1 0 KQYQDS(1)PNQK 135.02 2.89E-05 126440000 364090 285010 170020 421350 340510 338220 494210 573510 275500 560930 TRUE FALSE FALSE 445080.5644 318339.4402 232917.4731 444367.2836 306607.6288 355928.6762 388617.9962 432855.7733 330790.323 421100.4742 1.056946244 0.755970273 0.55311615 1.055252394 0.728110386 0.845234565 0.92286288 1.027915663 0.785537759 1 18.68380497 -6.734940786 4.167513493 0.937925935 0.820096691 0.095946086 0.151863573 0.488844447 18.86123314 0.062180448 0.044823946 1.84E-07 6.734940786 -0.117829244 KRAEFTVETR ddPTM_HeLa_A485_30min_R1 2 KRAEFTVETR 10 2 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 187.31 1.11E-09 183475000 192451 296420 248850 179304 276110 282360 312050 424600 238160 271700 FALSE FALSE TRUE 235261.061 331083.7405 340909.9705 189098.9235 248619.5189 297143.933 245377.9683 320466.1843 285956.5275 203970.1903 1.153409038 1.623196704 1.671371538 0.92709098 1.218901245 1.456800783 1.203008969 1.571142253 1.401952546 1 17.6379988 -11.05422559 2.368398209 0.511609132 1.36329808 0.188634584 0.222882428 21184268.55 6840303.539 56002883.16 0.058853641 8.83E-12 11.05422559 0.851688947 KRAEFTVETR ddPTM_HeLa_A486_30min_R1 1 KRAEFTVETR 10 2 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 149.96 0.00022011 24081000 30179 20796 19108 12578 34273 21008 26777 24296 17852 30914 FALSE FALSE TRUE 28063.60794 19148.04922 26507.12933 29282.21966 29974.16076 18416.24655 20077.11138 18764.33118 19399.42573 23172.93318 1.211051174 0.826310984 1.143883216 1.263638894 1.293498778 0.794730922 0.866403542 0.809752094 0.837158834 1 14.50015305 -6.27442714 24.98614056 0.850018226 1.136054571 0.544091341 0.13049895 655.4941434 1261050.334 0.048611056 0.0431308 5.32E-07 6.27442714 0.286036345 KRAPS(ph)PLPK ddPTM_HeLa_A485_30min_R1 2 KRAPSPLPK 9 2 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 0 KRAPS(1)PLPK;KRAPS(1)PLPK ; 98.105 0.0010004 2363280000 2549440 2769820 1770650 2914340 3051840 3580590 4630200 5459800 2208850 3977280 TRUE FALSE FALSE 3116554.133 3093726.355 2425687.118 3073543.015 2747988.094 3768064.156 3640919.945 4120775.489 2652145.934 2985817.292 1.043785948 1.036140544 0.812403064 1.029380807 0.920347036 1.261987519 1.219404802 1.380116426 0.888247898 1 21.50969446 -6.255212212 24.96184267 1.178049449 0.966894251 0.275829418 0.143498993 571.9642451 2292741.793 0.046507303 0.045414169 5.56E-07 6.255212212 -0.211155197 KRAPS(ph)PLPK ddPTM_HeLa_A486_30min_R1 2 KRAPSPLPK 9 2 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 0 KRAPS(1)PLPK;KRAPS(1)PLPK ; 98.156 0.0015798 1932750000 6661600 5866800 2932800 2560200 5570000 5713900 7368400 7060100 4389700 8273200 TRUE FALSE FALSE 6194656.241 5401893.401 4068458.703 5960274.985 4871358.662 5008977.113 5524748.385 5452669.351 4770202.73 6201536.871 0.998890496 0.87105721 0.656040396 0.961096436 0.785508296 0.80769932 0.890867619 0.879244849 0.769196867 1 22.56419436 -10.08469747 4.494100859 1.000011475 0.844421135 0.194469968 0.093551357 20373796.01 45718503.66 1371.551379 0.022033627 8.23E-11 10.08469747 -0.155590339 KRDAEDDGEEEDD ddPTM_HeLa_A485_30min_R1 1 KRDAEDDGEEEDD 13 2 Q5TB25;Q5TB19;Q9BTT0-2;Q9BTT0;H0YCE2;Q9BTT0-3 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 145.81 1.26E-07 558490000 443920 420250 347410 649060 552040 525480 766410 768500 470590 833160 FALSE FALSE TRUE 542668.4725 469394.5818 475931.4159 684516.5043 497076.9593 552993.3203 602660.2425 580024.17 565033.0965 625468.5452 0.867619126 0.750468725 0.760919825 1.094405961 0.79472735 0.884126507 0.963534053 0.927343468 0.903375719 1 19.25457781 -1 0.15367501 1.00569915 0.210508881 0.236724122 0.090113361 97.19533929 0.975446738 0.30368687 17.32964824 0.1 1 -0.795190269 KRDAEDDGEEEDD ddPTM_HeLa_A486_30min_R1 2 KRDAEDDGEEEDD 13 2 Q5TB25;Q5TB19;Q9BTT0-2;Q9BTT0;H0YCE2;Q9BTT0-3 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 ; ; 180.09 6.63E-17 917140000 925330 870150 575800 555770 936810 1131420 1374980 1227840 806470 1452750 FALSE FALSE TRUE 860469.1454 801196.145 798765.1805 1293860.647 819306.5544 991836.9038 1030945.461 948287.6356 876375.4689 1088971.944 0.790166496 0.73573626 0.733503911 1.188148743 0.752367 0.910801154 0.946714437 0.870809979 0.80477323 1 20.05453535 KRDFS(ph)PVPWSQYFESMEDVEVENETGKDTFR ddPTM_HeLa_A485_30min_R1 2 KRDFSPVPWSQYFESMEDVEVENETGKDTFR 31 3 Q9Y570-4;Q9Y570 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 KRDFS(1)PVPWSQYFESMEDVEVENETGKDTFR;KRDFS(0.982)PVPWS(0.018)QYFESMEDVEVENETGKDTFR ; 214.74 2.50E-30 492620000 192223 190735 97377.4 205938 235135 282662 447888 567142 163682 312401 TRUE FALSE FALSE 234982.3432 213039.7991 133401.3525 217187.8715 211724.1338 297461.7452 352193.0699 428049.5353 196531.476 234525.18 1.001949314 0.908387744 0.568814626 0.926074852 0.902777833 1.26835739 1.501728172 1.82517517 0.837997336 1 17.8393833 -6.275323245 3.115294202 1.363454832 0.842258681 0.364595533 0.274422504 0.247048905 4.922426106 0.099639968 0.091768039 5.30E-07 6.275323245 -0.521196152 KRDFS(ph)PVPWSQYFESMEDVEVENETGKDTFR ddPTM_HeLa_A486_30min_R1 1 KRDFSPVPWSQYFESMEDVEVENETGKDTFR 31 3 Q9Y570-4;Q9Y570 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 KRDFS(0.962)PVPWS(0.038)QYFESMEDVEVENETGKDTFR 274.79 1.97E-77 326270000 284360 273750 131400 219450 348790 358550 502310 497370 221720 480420 TRUE FALSE FALSE 264427.8324 252057.053 182281.599 510890.6904 305041.5059 314315.7465 376626.7251 384129.7085 240938.8681 360119.705 0.734277599 0.699925746 0.506169467 1.41866908 0.847055858 0.872809075 1.045837592 1.066672285 0.669052165 1 18.45811702 -5.214339291 24.99994797 0.983028416 0.652104392 0.404606817 0.189885962 420.1414666 223003.4532 0.05023689 0.087012524 6.10E-06 5.214339291 -0.330924024 KRDFTNEAPPAPLPDAS(ph)ASPLSPHRR ddPTM_HeLa_A486_30min_R1 1 KRDFTNEAPPAPLPDASASPLSPHRR 26 3 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDAS(0.353)AS(0.353)PLS(0.294)PHRR 55.442 0.030968 113560000 143500 104110 92460 36650 153610 101460 130860 143910 85836 131770 TRUE FALSE FALSE 133441.391 95859.94444 128262.9882 85323.05219 134342.8014 88942.89677 98117.4439 111144.8345 93276.33359 98773.93432 1.350977785 0.970498392 1.298550969 0.863821541 1.36010378 0.900469313 0.993353607 1.125244583 0.944341584 1 16.59184276 KRDFTNEAPPAPLPDASAS(ph)PLSPHRR ddPTM_HeLa_A485_30min_R1 1 KRDFTNEAPPAPLPDASASPLSPHRR 26 3 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDAS(0.019)AS(0.588)PLS(0.393)PHRR 131.94 5.35E-06 2232700000 1266200 2028100 1471200 916470 1913000 2175500 2301300 3231000 1445800 1451400 TRUE FALSE FALSE 1547861.822 2265268.653 2015458.102 966534.4355 1722535.003 2289405.816 1809608.455 2438592.184 1735958.798 1089592.691 1.420587559 2.079005 1.849735335 0.887060315 1.580898089 2.101157464 1.660811852 2.238076856 1.593218101 1 20.0553575 -6.050722396 24.93653609 1.797818808 1.569115912 0.015701399 0.425321449 1114.715662 548022.3994 0.140028526 0.140030165 8.90E-07 6.050722396 -0.228702896 KRDFTNEAPPAPLPDASAS(ph)PLSPHRR ddPTM_HeLa_A486_30min_R1 1 KRDFTNEAPPAPLPDASASPLSPHRR 26 3 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDAS(0.009)AS(0.677)PLS(0.315)PHRR 158.57 5.46E-10 2452200000 1976900 1326300 1117500 465570 1963400 1316800 1736100 1776300 1172800 1745300 TRUE FALSE FALSE 1838329.519 1221199.158 1550225.928 1083870.489 1717132.064 1154346.604 1301709.417 1371875.266 1274459.248 1308265.52 1.405165458 0.933449012 1.184947477 0.828478984 1.312525659 0.882348871 0.994988706 1.048621435 0.974159472 1 20.31922394 -4.253083716 24.75690913 1.022827187 1.405165677 0.428283182 0.134176003 853.309245 2528197.425 0.030602566 0.336030803 5.58E-05 4.253083716 0.38233849 KRDFTNEAPPAPLPDASASPLS(ph)PHR ddPTM_HeLa_A485_30min_R1 2 KRDFTNEAPPAPLPDASASPLSPHR 25 2 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDASASPLS(1)PHR;KRDFTNEAPPAPLPDASASPLS(1)PHR ; 155.92 5.86E-10 2217700000 1194210 1514520 1224330 1151800 1727850 1635030 1927690 2295000 1328330 1516780 TRUE FALSE FALSE 1459857.895 1691629.939 1677260.616 1214719.917 1555819.187 1720637.643 1515823.284 1732147.652 1594913.647 1138674.66 1.282067605 1.485613054 1.472993713 1.066784008 1.366342153 1.511088024 1.331217192 1.521196275 1.400675454 1 20.11892417 -10.26694626 3.479706081 0.998920443 1.384387261 0.439197771 0.129470723 74801091.89 117331977 862069.4457 0.032527467 5.41E-11 10.26694626 0.385466818 KRDFTNEAPPAPLPDASASPLS(ph)PHR ddPTM_HeLa_A486_30min_R1 2 KRDFTNEAPPAPLPDASASPLSPHR 25 2 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDASASPLS(1)PHR;KRDFTNEAPPAPLPDASASPLS(1)PHR ; 168.87 2.49E-14 1668350000 2201400 1939780 1594580 707920 2413800 1848080 2460900 2507300 1585730 2461000 TRUE FALSE FALSE 2047093.228 1786064.768 2212044.08 1648073.536 2111038.696 1620082.68 1845156.791 1936442.524 1723182.353 1844749.582 1.109686241 0.968188195 1.199102633 0.893386047 1.144349736 0.878212791 1.00022074 1.049704818 0.934100959 1 20.81499356 -5.270224279 24.91214077 0.990517229 1.079911944 0.224812141 0.089530095 1009.543257 2862852.542 0.023653974 0.035681812 5.37E-06 5.270224279 0.089394714 KRDFTNEAPPAPLPDASASPLS(ph)PHRR ddPTM_HeLa_A485_30min_R1 2 KRDFTNEAPPAPLPDASASPLSPHRR 26 3 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDAS(0.003)AS(0.23)PLS(0.768)PHRR;KRDFTNEAPPAPLPDASAS(0.138)PLS(0.862)PHRR ; 156.9 1.22E-09 5461600000 2135480 4008800 2792390 1704460 3608000 3904300 4529200 6023200 2851400 2709230 TRUE FALSE FALSE 2610510.159 4477594.288 3825411.262 1797570.334 3248774.852 4108723.111 3561499.42 4546000.756 3423649.825 2033868.821 1.283519435 2.201515773 1.88085447 0.883818226 1.597337458 2.020151481 1.751095933 2.23514944 1.6833189 1 20.9557952 -6.10744954 11.26652398 1.815639715 1.582222394 0.020167858 0.442092538 1.854797577 184.5020302 0.146564875 0.146599982 7.81E-07 6.10744954 -0.233417321 KRDFTNEAPPAPLPDASASPLS(ph)PHRR ddPTM_HeLa_A486_30min_R1 2 KRDFTNEAPPAPLPDASASPLSPHRR 26 3 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 KRDFTNEAPPAPLPDAS(0.002)AS(0.217)PLS(0.781)PHRR;KRDFTNEAPPAPLPDASAS(0.218)PLS(0.782)PHRR ; 143.85 6.48E-09 4206500000 4420000 3219900 2891500 1094540 4472000 3312500 4006000 4373700 2646800 4004300 TRUE FALSE FALSE 4110180.825 2964743.397 4011166.237 2548144.435 3911080.06 2903837.429 3003656.429 3377903.987 2876226.755 3001597.216 1.369331236 0.987721931 1.336343936 0.848929504 1.302999629 0.967430744 1.000686039 1.125368843 0.958232084 1 21.51729896 -1 0.625817271 1.042326062 21.3135918 0.258861368 0.149698807 285.0072825 2.01394606 0.060085984 7956.461485 0.1 1 20.27126573 KRDHANYEEDENGDIT(ph)PIK ddPTM_HeLa_A485_30min_R1 1 KRDHANYEEDENGDITPIK 19 2 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 KRDHANYEEDENGDIT(1)PIK 138.08 1.16E-06 698020000 225210 186440 116990 295530 244550 276670 353960 386910 180140 365610 TRUE FALSE FALSE 275307.1875 208242.5362 160269.4694 311674.0556 220201.7433 291156.0134 278333.5544 292019.7158 216292.4457 274470.1556 1.003049628 0.758707393 0.583923119 1.135548071 0.802279369 1.060792977 1.014075843 1.063939776 0.788036299 1 18.06628976 -5.268577502 24.99823431 0.980629368 0.77957478 0.296938986 0.140148993 663.8319843 2324788.536 0.038459071 0.058423018 5.39E-06 5.268577502 -0.201054588 KRDHANYEEDENGDIT(ph)PIK ddPTM_HeLa_A486_30min_R1 1 KRDHANYEEDENGDITPIK 19 2 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 KRDHANYEEDENGDIT(1)PIK 154.71 7.87E-09 566490000 193090 121620 57760 73290 131800 190990 221290 230060 104970 298870 TRUE FALSE FALSE 179555.3881 111982.3883 80126.21887 170622.8239 115268.415 167427.5956 165920.9014 177680.3602 114068.8841 224031.0067 0.801475612 0.499852185 0.357656826 0.761603612 0.514519917 0.747341174 0.740615792 0.79310611 0.50916561 1 17.77333889 -6.275784642 23.63847409 0.744025526 0.579135398 0.21302545 0.162897885 656.1217215 1081168.646 0.055738841 0.049418304 5.30E-07 6.275784642 -0.164890129 KRDS(ph)DAGSST(ph)PTTSTR ddPTM_HeLa_A485_30min_R1 2 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 2 0 KRDS(0.989)DAGS(0.025)S(0.212)T(0.767)PT(0.007)TSTR;KRDS(0.987)DAGS(0.037)S(0.24)T(0.543)PT(0.101)T(0.086)S(0.003)T(0.003)R ; 104.38 0.00022646 509250000 729810 670500 541350 886680 955300 787820 1017790 1035140 657170 1201980 TRUE FALSE FALSE 892153.7167 748909.1424 741617.8925 935117.0832 860186.9777 829069.037 800330.8519 781270.292 789057.9911 902348.5068 0.988701937 0.82995554 0.821875237 1.036314768 0.953275781 0.91879028 0.886942069 0.86581879 0.874449268 1 19.78332522 -4.791130021 0.004494956 1.810496012 5.91E-07 0.025619528 0.069477609 173235.691 145.2637198 28463.35709 30058.7836 1.62E-05 4.791130021 -1.810495421 KRDS(ph)DAGSSTPT(ph)TSTR ddPTM_HeLa_A486_30min_R1 2 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 2 0 KRDS(0.968)DAGS(0.114)S(0.042)T(0.165)PT(0.385)T(0.237)S(0.047)T(0.041)R;KRDS(0.936)DAGS(0.062)S(0.02)T(0.22)PT(0.34)T(0.293)S(0.069)T(0.06)R ; 70.345 0.0071451 480536000 480740 479391 255815 243027 501887 547389 643897 579031 383107 628838 TRUE FALSE FALSE 447042.6085 441402.3112 354873.419 565779.1379 438935.6525 479857.7106 482787.1602 447198.2815 416315.0232 471372.8718 0.948384252 0.936418572 0.752850748 1.200279379 0.931185647 1.01800027 1.024214988 0.948714507 0.883196824 1 18.84650921 -5.235755439 24.99947207 0.997453816 0.884937975 0.263598488 0.09285872 1139.702323 1109328.589 0.024843721 0.043010188 5.81E-06 5.235755439 -0.112515841 KRDS(ph)DAGSSTPTTSTR ddPTM_HeLa_A485_30min_R1 3 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KRDS(1)DAGSSTPTTSTR;KRDS(0.974)DAGS(0.022)S(0.002)T(0.001)PTTSTR;KRDS(1)DAGSSTPTTSTR ;; 155.16 1.78E-08 432132000 260657 277772 221925 299006 313135 289632 388994 416324 257574 398767 TRUE FALSE FALSE 318639.2504 310255.0191 304024.2926 315339.9407 281958.1799 304796.6837 305882.2541 314219.8862 309266.7392 299361.7257 1.064395422 1.036388397 1.015575027 1.053374275 0.941864493 1.018155153 1.021781437 1.0496328 1.033087107 1 18.19153025 -4.222172468 1.370310429 1.016482648 1.08817353 0.204611457 0.02933173 2.45507921 3.854073657 0.008856332 0.250206856 6.00E-05 4.222172468 0.071690882 KRDS(ph)DAGSSTPTTSTR ddPTM_HeLa_A486_30min_R1 2 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KRDS(0.987)DAGS(0.007)S(0.002)T(0.002)PT(0.001)T(0.001)S(0.001)TR;KRDS(0.999)DAGS(0.001)STPTTSTR ; 148.52 4.27E-08 332580000 104966 108264 74974 40879.9 106365 105160 130533 114715 87633 129770 TRUE FALSE FALSE 97608.42544 99684.76635 104005.9407 95170.47316 93023.70989 92186.42839 97872.26276 88596.89871 95229.099 97274.74734 1.003430264 1.024775382 1.069197747 0.978367724 0.956298653 0.947691265 1.006142554 0.910790325 0.978970407 1 16.56977771 -5.431537668 6.147459964 0.963536685 1.03136435 0.498541732 0.029555958 0.181551614 10.00843028 0.008119145 0.012065076 3.70E-06 5.431537668 0.067827665 KRDS(ph)EEEFGS(ph)ERDEYR ddPTM_HeLa_A485_30min_R1 1 KRDSEEEFGSERDEYR 16 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 KRDS(1)EEEFGS(1)ERDEYR 85.932 0.00075148 801240000 304180 293410 236530 512480 408450 329490 515540 439250 310190 656060 TRUE FALSE FALSE 371843.7916 327721.7472 324032.2898 540475.4847 367783.2838 346741.5869 405390.6674 331523.2488 372442.2878 492516.3159 0.754987763 0.665402823 0.657911788 1.097375797 0.74674335 0.704020508 0.82310099 0.673121353 0.756202943 1 18.90981199 -11.09636219 2.331659988 1.394667831 0.764831722 0.252602571 0.121616691 34023898.36 8806547.624 71313111.26 0.031645901 8.01E-12 11.09636219 -0.629836109 KRDS(ph)EEEFGS(ph)ERDEYR ddPTM_HeLa_A486_30min_R1 2 KRDSEEEFGSERDEYR 16 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 KRDS(1)EEEFGS(1)ERDEYR;KRDS(1)EEEFGS(1)ERDEYR ; 107.21 0.00013905 2043100000 800270 801350 487210 472670 761160 898640 1127490 968280 690120 1362020 TRUE FALSE FALSE 744175.2056 737848.1075 675870.7599 1100399.647 665688.2153 787774.9335 845380.0766 747823.7814 749940.1573 1020961.327 0.728896567 0.72269937 0.661994477 1.077807375 0.65202099 0.77160115 0.828023603 0.732470234 0.734543158 1 19.96149679 -10.5970352 2.811740793 1.016906952 0.769905528 0.2712359 0.114143659 47145871.03 47194437.13 5910878.286 0.028011009 2.53E-11 10.5970352 -0.247001424 KRDS(ph)EEEFGSER ddPTM_HeLa_A485_30min_R1 2 KRDSEEEFGSER 12 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KRDS(0.999)EEEFGS(0.001)ER;KRDS(0.999)EEEFGS(0.001)ER ; 90.561 0.0014999 1394080000 501470 500930 386200 566870 511800 471220 492500 379180 333890 545860 TRUE FALSE FALSE 613020.2714 559509.406 529071.4511 597836.6727 460843.395 495892.3506 387273.3516 286185.5105 400898.6604 409787.1478 1.495948018 1.36536592 1.291088444 1.458895614 1.124592114 1.210121775 0.94505978 0.698376003 0.978309502 1 18.64451521 -6.40434977 1.164187877 0.866657942 1.393400039 0.775189965 0.114495902 0.209396117 0.582988169 0.062374131 0.049345829 3.94E-07 6.40434977 0.526742097 KRDS(ph)EEEFGSER ddPTM_HeLa_A486_30min_R1 2 KRDSEEEFGSER 12 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KRDS(0.819)EEEFGS(0.181)ER;KRDS(1)EEEFGSER ; 132.4 1.68E-05 1206240000 548350 561520 398920 212916 398000 490100 523380 438860 452090 830620 TRUE FALSE FALSE 509913.4967 517023.1102 553392.5074 495679.2082 348079.1288 429636.445 392424.7883 338941.1582 491277.5252 622627.3456 0.818970609 0.830389339 0.888802124 0.796108959 0.559048894 0.690037866 0.630272331 0.544372425 0.789039429 1 19.24800942 -5.562264945 10.17194934 0.675226202 0.844173163 0.201872937 0.12414101 0.526958253 132.2225612 0.034375746 0.044453743 2.74E-06 5.562264945 0.168946961 KRDS(ph)EEEFGSERDEYR ddPTM_HeLa_A485_30min_R1 4 KRDSEEEFGSERDEYR 16 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KRDS(1)EEEFGSERDEYR;KRDS(0.996)EEEFGS(0.004)ERDEYR;KRDS(0.997)EEEFGS(0.003)ERDEYR;KRDS(1)EEEFGSERDEYR ;;; 252.4 4.26E-43 3263170000 1143160 938740 994850 1951910 1750970 1240570 1843620 1726780 1123510 2648300 TRUE FALSE FALSE 1397451.998 1048517.477 1362886.414 2058537.901 1576637.279 1305524.327 1449715.526 1303284.498 1348988.152 1988127.548 0.702898564 0.527389441 0.685512564 1.03541541 0.793026222 0.656660247 0.729186378 0.655533645 0.678521935 1 20.92297889 -11.39049599 2.240239761 3.099989697 0.71985756 0.317742142 0.12384212 5215420.452 712995.8643 55284677.57 0.034570855 4.07E-12 11.39049599 -2.380132136 KRDS(ph)EEEFGSERDEYR ddPTM_HeLa_A486_30min_R1 3 KRDSEEEFGSERDEYR 16 3 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KRDS(0.976)EEEFGS(0.024)ERDEYR;KRDS(1)EEEFGSERDEYR;KRDS(1)EEEFGSERDEYR ;; 254.32 1.01E-49 3151050000 1256310 1170000 871140 861370 1486860 1469870 1930870 1829370 1135200 1941960 TRUE FALSE FALSE 1168249.157 1077284.939 1208468.738 2005312.891 1300364.154 1288532.384 1447745.903 1412862.386 1233600.05 1455680.576 0.802544992 0.740055859 0.830174393 1.377577557 0.893303226 0.885175227 0.994549166 0.970585449 0.847438697 1 20.47326239 -5.018917002 24.95398298 0.994509727 0.774754001 0.318296201 0.13897714 841.8872223 1110561.164 0.038153702 0.06754557 9.57E-06 5.018917002 -0.219755726 KRDS(ph)QGTYSSR ddPTM_HeLa_A485_30min_R1 5 KRDSQGTYSSR 11 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 KRDS(1)QGTYSSR;KRDS(1)QGTYSSR;KRDS(0.909)QGT(0.082)YS(0.007)S(0.002)R;KRDS(0.998)QGT(0.002)YSSR;KRDS(0.395)QGT(0.03)YS(0.287)S(0.287)R ;;;; 194.23 1.48E-11 1975162000 798081 770912 349059 797429 356933 849851 660529 1038832 669001 877930 TRUE FALSE FALSE 975611.3651 861063.4524 478190.4497 840990.5271 321395.4973 894347.8842 519401.5831 784056.8232 803263.3643 659078.2081 1.480266459 1.306466276 0.725544319 1.276010217 0.487643945 1.356967767 0.788072761 1.189626381 1.218767901 1 19.33009014 -4.564118993 8.555763975 1.008041263 1.437683931 0.274417536 0.259203478 0.270496715 51.23192017 0.061509813 0.164894399 2.73E-05 4.564118993 0.429642668 KRDS(ph)QGTYSSR ddPTM_HeLa_A486_30min_R1 4 KRDSQGTYSSR 11 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 KRDS(0.999)QGTYSSR;KRDS(1)QGTYSSR;KRDS(0.932)QGT(0.037)YS(0.014)S(0.018)R;KRDS(0.934)QGT(0.008)YS(0.054)S(0.003)R ;;; 181.26 8.57E-11 1034280000 495937 220932 422816 235523 176828 860857 368255 331076 608242 577665 TRUE FALSE FALSE 461174.3773 203424.5437 586541.6786 548309.4467 154648.5834 754653.2159 276113.704 255697.2221 660964.9063 433013.924 1.065033598 0.469787534 1.354556161 1.266262853 0.357144597 1.74279203 0.637655486 0.590505773 1.526428758 1 18.72405389 -4.758788159 24.99999652 1.036442758 0.76741073 0.065349634 0.434839446 208.6676128 1967547.138 0.108156854 0.260488486 1.74E-05 4.758788159 -0.269032028 KRDSDAGSS(ph)TPTTSTR ddPTM_HeLa_A485_30min_R1 1 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KRDSDAGS(0.059)S(0.47)T(0.47)PTTSTR 96.487 0.00049954 35334000 10721 23402 13488 7979 23393 30776 34012 54118 15140 11727 TRUE FALSE FALSE 13105.84946 26138.66033 18477.77248 8414.872566 21063.91078 32387.38377 26745.05835 40845.47565 18178.45913 8803.674719 1.48867943 2.969062484 2.098870423 0.955836379 2.392627108 3.6788483 3.037942586 4.639593914 2.064871739 1 13.10389013 -6.008125017 24.11753504 3.111821339 1.934608903 0.159001965 1.023273391 361.6161649 1073393.141 0.313039809 0.338953447 9.81E-07 6.008125017 -1.177212437 KRDSDAGSST(ph)PTTSTR ddPTM_HeLa_A485_30min_R1 3 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KRDSDAGS(0.029)S(0.388)T(0.581)PT(0.002)TSTR;KRDSDAGSS(0.01)T(0.99)PTTSTR;KRDS(0.012)DAGS(0.012)S(0.052)T(0.922)PT(0.001)T(0.001)STR ;; 112.56 0.00016177 176766000 109943 245415 126012 66301 218218 256468 295225 514750 133613 112512 TRUE FALSE FALSE 134399.4411 274114.1494 172629.0826 69922.85575 196491.4497 269896.2679 232147.767 388506.7554 160427.9035 84464.82903 1.591188221 3.245305207 2.043798402 0.827833982 2.326310868 3.195368664 2.748454826 4.599627559 1.899345626 1 16.36606311 -6.008479141 24.81577378 2.899897427 1.972976684 0.090009148 1.033972176 719.9338202 2107026.164 0.322800653 0.348962499 9.81E-07 6.008479141 -0.926920743 KRDSDAGSST(ph)PTTSTR ddPTM_HeLa_A486_30min_R1 1 KRDSDAGSSTPTTSTR 16 2 P51532-5;A0A2R8YF58;A0A2R8YG32;A0A2R8Y440;A0A2R8Y4P4;A0A2R8Y7F3;Q9HBD4;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8Y7S2;A0A2R8YGG3;A0A0A0MT49;A0A2R8YDA1;A0A2R8Y6V2;A0A2R8Y4C5;P51532-2;P51532-3;P51532-4;P51532;K7EP28;A0A2R8Y5K3;K7EQF0;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KRDS(0.001)DAGS(0.006)S(0.032)T(0.961)PTTSTR 67.449 0.009883 39136000 73373 41563 33465 22564 73777 32232 58145 65234 25200 55641 TRUE FALSE FALSE 68229.9316 38269.39651 46423.54422 52530.13232 64523.20072 28255.54355 43596.506 50381.64225 27384.35629 41708.13144 1.635890395 0.91755241 1.113057397 1.259469809 1.547017296 0.677458869 1.045275933 1.20795731 0.656571161 1 15.34804106 -6.264070811 24.9928518 0.938438953 1.261613413 0.368069328 0.24441651 310.0778131 2945049.563 0.084093613 0.077551944 5.44E-07 6.264070811 0.32317446 KREDS(ph)APPSSVAR ddPTM_HeLa_A485_30min_R1 3 KREDSAPPSSVAR 13 2 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 KREDS(1)APPSSVAR;KREDS(0.995)APPS(0.004)S(0.001)VAR;KREDS(1)APPSSVAR ;; 123.92 0.00037175 340890000 295984 357145 274054 370660 457510 412760 467140 585140 332118 575960 TRUE FALSE FALSE 361824.6197 398910.001 375437.9789 390908.2172 411958.698 434371.4754 367331.7228 441633.4975 398771.0362 432383.7718 0.836813598 0.922583194 0.868298034 0.904076986 0.952761701 1.004597082 0.849550207 1.021392398 0.922261801 1 18.72195285 -1 0.189396582 0.993808457 0.362441275 0.385600633 0.048984492 58.4135632 0.680544647 0.097181409 10.77414615 0.1 1 -0.631367181 KREDS(ph)APPSSVAR ddPTM_HeLa_A486_30min_R1 4 KREDSAPPSSVAR 13 2 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 KREDS(0.999)APPS(0.001)S(0.001)VAR;KREDS(1)APPSSVAR;KREDS(1)APPSSVAR;KREDS(0.994)APPS(0.004)S(0.001)VAR ;;; 82.259 0.0018021 741730000 632754 631989 425810 255027 675590 579719 696932 720112 490363 727229 TRUE FALSE FALSE 588401.2121 581907.89 590695.0356 593715.7444 590851.2026 508199.1639 522552.2422 556158.2175 532868.0597 545126.1249 1.079385458 1.067473862 1.083593335 1.089134637 1.083879813 0.932259785 0.958589615 1.020237688 0.977513341 1 19.05623054 -6.246243439 24.96000168 0.977789288 1.080589072 0.841229193 0.022367749 319.8952824 525442.4415 0.007793983 0.007765421 5.67E-07 6.246243439 0.102799784 KREEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_A485_30min_R1 7 KREEGSDIEDEDMEELLNDTR 21 2 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR ;;;;;; 323.8 5.35E-103 2990954000 2038157 1846567 1510898 2773482 2710304 2292429 3498512 3395900 1846222 3854310 TRUE FALSE FALSE 2491537.993 2062506.948 2069842.044 2924990.299 2440456.617 2412457.038 2751026.331 2563050.2 2216741.821 2893501.45 0.86108061 0.712806606 0.71534163 1.01088261 0.843426782 0.83375007 0.950760308 0.885795374 0.766110492 1 21.46438494 -1.000000008 0.033866482 1.418083701 3.15E-08 0.219190208 0.089940048 1680.358152 4.362570943 54.94892781 149.0966957 0.099999998 1.000000008 -1.418083669 KREEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_A486_30min_R1 6 KREEGSDIEDEDMEELLNDTR 21 2 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR ;;;;; 370.62 1.80E-142 2436294000 1064669 1028251 637420 524599 1144712 1151361 1468592 1384624 868135 1497469 TRUE FALSE FALSE 990041.2011 946768.6459 884246.0947 1221292.984 1001131.547 1009317.786 1101134.748 1069375.341 943385.6408 1122493.016 0.882002104 0.843451703 0.787751979 1.088018337 0.891882206 0.899175115 0.980972472 0.952678838 0.840437872 1 20.09827504 -5.216030207 24.99989683 0.945175358 0.838306905 0.369640402 0.067205134 491.4150538 270546.4566 0.017862792 0.030939072 6.08E-06 5.216030207 -0.106868452 KREELSNVLAAMR ddPTM_HeLa_A485_30min_R1 2 KREELSNVLAAMR 13 2 Q9Y3U8 Q9Y3U8 RPL36 60S ribosomal protein L36 0 0 ; ; 158.2 8.89E-09 344650000 635320 765570 701010 614500 866740 868670 999400 1198710 732230 941610 FALSE FALSE TRUE 776644.7422 855096.7519 960342.7705 648068.579 780444.3223 914152.218 785870.0257 904724.493 879181.8446 706883.956 1.098687749 1.209670618 1.358557882 0.916796277 1.10406286 1.293213985 1.111738382 1.279876966 1.24374282 1 19.43111387 KREELSNVLAAMR ddPTM_HeLa_A486_30min_R1 1 KREELSNVLAAMR 13 2 Q9Y3U8 Q9Y3U8 RPL36 60S ribosomal protein L36 0 0 84.892 0.0020726 123050000 233910 203250 176250 89172 288760 223470 255270 243360 178280 276880 FALSE FALSE TRUE 217514.1169 187143.7298 244498.7201 207596.9225 252541.0282 195900.5435 191398.746 187952.2405 193733.4539 207547.4458 1.04802117 0.901691317 1.178037721 1.000238387 1.216786972 0.943883182 0.922192732 0.905586864 0.933441764 1 17.66308165 -6.481940526 24.99591426 0.932523266 1.063748244 0.358970724 0.085095517 550.7761 336291.387 0.029335734 0.025868664 3.30E-07 6.481940526 0.131224977 KREENTSNESTDVTK(ac)GDSK ddPTM_HeLa_A485_30min_R1 1 KREENTSNESTDVTKGDSK 19 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 KREENTSNESTDVTK(1)GDSK 105.77 0.0001153 11745000 4829.3 4540.6 3570.4 9874.3 9786.7 19150 36777 46704 28672 56996 FALSE TRUE FALSE 5903.561124 5071.583672 4891.239537 10413.70801 8812.301785 20152.66439 28919.29351 35249.77077 34426.2074 42787.94613 0.137972529 0.118528327 0.114313492 0.243379478 0.205952905 0.47098929 0.675874776 0.823824791 0.804577235 1 15.38491681 -6.698325077 0.863832076 0.939816512 0.114566257 0.980070056 0.045542186 0.073988239 0.109955195 0.034278063 0.021202574 2.00E-07 6.698325077 -0.825250255 down KREENTSNESTDVTK(ac)GDSK ddPTM_HeLa_A486_30min_R1 1 KREENTSNESTDVTKGDSK 19 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 KREENTSNESTDVTK(1)GDSK 95.094 0.00090519 26223000 44756 42857 19187 24127 46071 53883 64037 65142 34179 66622 FALSE TRUE FALSE 41618.83552 39460.85524 26616.72025 56168.87531 40292.34558 47235.4633 48014.26529 50310.58864 37141.66324 49939.41756 0.833386482 0.790174519 0.53298019 1.124740296 0.8068245 0.94585531 0.961450246 1.007432427 0.74373441 1 15.60789137 -5.262330054 24.99979473 0.937153081 0.725979818 0.405627061 0.123307073 81.70681307 2293400.505 0.03306262 0.052435327 5.47E-06 5.262330054 -0.211173263 KRENS(ph)LQEDR ddPTM_HeLa_A486_30min_R1 1 KRENSLQEDR 10 2 P41002 P41002 CCNF Cyclin-F 1 0 KRENS(1)LQEDR 78.814 0.0059452 147900000 192930 160820 119490 66739 193430 184820 200600 196440 146410 202870 TRUE FALSE FALSE 179406.6033 148076.0375 165759.7281 155371.7648 169168.2057 162018.7875 150407.7583 151714.9003 159100.9367 152070.0315 1.179763044 0.973735824 1.090022317 1.021711926 1.112436185 1.0654222 0.989069028 0.997664686 1.046234653 1 17.21437634 -6.736101536 13.55975511 1.008051126 1.069425925 0.268038914 0.052809673 2.074954272 1108.682161 0.019078254 0.014694887 1.84E-07 6.736101536 0.061374799 KREPEDEGEDDD ddPTM_HeLa_A485_30min_R1 4 KREPEDEGEDDD 12 2 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 ;;; ;;; 172.92 1.40E-10 4109220000 1840890 2068860 1758500 2357540 2529700 2316090 2968770 3071580 1995190 3037230 FALSE FALSE TRUE 2250389.63 2310795.18 2409042.327 2486326.441 2277834.186 2437356.891 2334468.037 2318270.189 2395606.332 2280104.457 0.986967778 1.013460227 1.056549107 1.090444095 0.999004313 1.068967206 1.023842583 1.016738589 1.050656396 1 21.12066849 -4.52386496 4.275215811 1.039857154 0.991139382 0.248593408 0.028087295 0.252451316 11.02381983 0.007052719 0.025264319 2.99E-05 4.52386496 -0.048717772 KREPEDEGEDDD ddPTM_HeLa_A486_30min_R1 4 KREPEDEGEDDD 12 2 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 ;;; ;;; 184.03 9.09E-13 4062120000 2933120 2868200 1738550 1369180 3055410 3169500 3663460 3488990 2324760 3877410 FALSE FALSE TRUE 2727523.435 2640913.386 2411763.12 3187520.235 2672171.987 2778479.315 2746823.56 2694623.141 2526272.069 2906481.298 0.938428001 0.908629066 0.829787937 1.096693874 0.919383857 0.955959812 0.945068376 0.927108371 0.86918573 1 21.47084219 KREQS(ph)NDIAR ddPTM_HeLa_A485_30min_R1 1 KREQSNDIAR 10 2 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 KREQS(1)NDIAR 49.149 0.036134 34500000 53780 73055 46995 52822 57376 64570 74871 107840 59015 71437 TRUE FALSE FALSE 65743.17546 81598.14676 64380.40613 55707.53211 51663.44398 67950.78536 58874.19921 81392.07091 70858.76918 53629.0706 1.225886907 1.521528265 1.200475888 1.038756247 0.96334774 1.267051332 1.097803832 1.517685651 1.321275353 1 15.71072763 -4.896891638 9.432318591 1.180943268 1.372990063 0.177324013 0.170716647 0.511467659 42.75453341 0.047194836 0.09857368 1.27E-05 4.896891638 0.192046795 KREQS(ph)NDIAR ddPTM_HeLa_A486_30min_R1 1 KREQSNDIAR 10 2 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 KREQS(1)NDIAR 57.267 0.024992 31686000 57228 44262 46293 25911 49825 75456 61544 54166 56059 76465 TRUE FALSE FALSE 53216.61273 40754.51792 64218.88937 60322.11747 43575.4839 66147.0059 46145.04025 41833.58424 60918.23926 57317.6663 0.928450444 0.711028912 1.120403071 1.052417542 0.760245256 1.154042203 0.80507535 0.729854981 1.062817857 1 15.80669225 -9.352914428 14.91079945 0.999971643 0.920766895 0.019180127 0.158565598 0 0 0.150756817 0.036563899 4.44E-10 9.352914428 -0.079204748 KRES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_HeLa_A485_30min_R1 4 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.917)ES(0.86)ES(0.216)DET(0.007)PPAAPQLIK;KRES(0.912)ES(0.89)ES(0.198)DET(0.001)PPAAPQLIK;KRES(0.616)ES(0.721)ES(0.507)DET(0.156)PPAAPQLIK;KRES(0.583)ES(0.843)ES(0.571)DET(0.003)PPAAPQLIK ;;; 179.81 2.68E-18 4888520000 2557170 1662640 1138300 4311330 2617250 2167700 3811100 2983530 1909310 6160810 TRUE FALSE FALSE 3126003.644 1857071.285 1559404.539 4546847.041 2356667.4 2281197.42 2996827.351 2251814.59 2292491.004 4625033.448 0.675887792 0.401526023 0.33716611 0.983094953 0.509546023 0.493228308 0.647957984 0.486875309 0.495670146 1 22.14103237 -10.27871604 3.792089454 1.000791579 0.557419196 0.375195751 0.170718403 64860295.95 131142593.8 632523.061 0.042605114 5.26E-11 10.27871604 -0.443372383 KRES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_HeLa_A486_30min_R1 3 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.635)ES(0.635)ES(0.635)DET(0.094)PPAAPQLIK;KRES(0.942)ES(0.815)ES(0.235)DET(0.007)PPAAPQLIK;KRES(0.937)ES(0.634)ES(0.427)DET(0.002)PPAAPQLIK ;; 172.06 3.99E-13 3989710000 2414730 2147020 944690 1438950 1960360 2908280 3682160 3162380 1875760 4166400 TRUE FALSE FALSE 2245469.897 1976882.316 1310499.268 3349948.321 1714473.369 2549485.983 2760844.622 2442375.108 2038352.387 3123106.321 0.718986056 0.632985916 0.419614042 1.072633454 0.548964138 0.816330192 0.884005967 0.782033929 0.652668266 1 21.57455025 -14 0.045202339 2.111312219 0.126308838 0.207027704 0.169799894 1061.76792 3.559368583 151.5769837 38.98560602 1.00E-14 14 -1.985003381 KRES(ph)ES(ph)ESDETPPAAPQLIKK ddPTM_HeLa_A485_30min_R1 2 KRESESESDETPPAAPQLIKK 21 3 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.993)ES(0.504)ES(0.504)DETPPAAPQLIKK;KRES(1)ES(0.985)ES(0.01)DET(0.006)PPAAPQLIKK ; 163.46 1.01E-13 1576500000 487500 576370 260210 465040 694410 897880 1446620 2152210 488180 757250 TRUE FALSE FALSE 595942.6931 643771.4577 356472.5072 490443.9577 625272.1022 944891.6084 1137537.819 1624377.123 586153.2481 568481.5112 1.048306201 1.132440449 0.627060863 0.862726312 1.099898748 1.662132523 2.001011109 2.857396575 1.031085861 1 19.1167539 -6.269658015 2.726279291 1.872746274 0.917566877 0.342289295 0.511344529 0.271004722 4.020356106 0.187530864 0.172947359 5.37E-07 6.269658015 -0.955179397 KRES(ph)ES(ph)ESDETPPAAPQLIKK ddPTM_HeLa_A486_30min_R1 1 KRESESESDETPPAAPQLIKK 21 3 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(1)ES(0.986)ES(0.014)DETPPAAPQLIKK 154.14 4.64E-10 547200000 478310 271570 111210 254190 343170 309450 574870 525480 192030 803590 TRUE FALSE FALSE 444782.939 250049.8042 154273.4903 591767.1661 300126.4187 271273.2053 431031.4456 405839.6751 208675.315 602365.8335 0.738393372 0.41511286 0.256112617 0.982404933 0.498246086 0.450346268 0.715564233 0.673742853 0.346426214 1 19.20028042 -11.01148579 2.956193271 1.47004055 0.565311122 0.28839121 0.205437733 185466066.8 177449814.9 591216981.5 0.050561316 9.74E-12 11.01148579 -0.904729428 KRES(ph)ESESDET(ph)PPAAPQLIK ddPTM_HeLa_A486_30min_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.466)ES(0.466)ES(0.466)DET(0.601)PPAAPQLIK 106.67 0.000181 673280000 369360 342580 148970 215060 299400 437580 564670 520350 278790 682450 TRUE FALSE FALSE 343469.7714 315432.7131 206655.1736 500670.5485 261846.4602 383595.8286 423383.5935 401877.6642 302955.7417 511560.078 0.671416293 0.616609323 0.403970486 0.978713098 0.511858668 0.749854895 0.827632201 0.785592312 0.592219281 1 18.96454416 -13.99999999 0.107387716 1.980058955 0.500569652 0.288674665 0.15420641 219.3549783 1.573246897 47.79204195 2.044963568 1.00E-14 13.99999999 -1.479489302 KRES(ph)ESESDETPPAAPQLIK ddPTM_HeLa_A485_30min_R1 2 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KRES(0.315)ES(0.315)ES(0.315)DET(0.056)PPAAPQLIK;KRES(0.316)ES(0.316)ES(0.316)DET(0.053)PPAAPQLIK ; 108.49 1.39E-05 875140000 1124740 997310 950640 1724840 1361450 1267130 1646420 1439400 1130750 2444000 TRUE FALSE FALSE 1374934.533 1113936.729 1302321.295 1819063.642 1225899.258 1333474.967 1294648.917 1086384.893 1357681.153 1834755.778 0.74938286 0.607130792 0.709806346 0.991447289 0.668153916 0.726786084 0.705624657 0.592114169 0.739979222 1 20.80715661 -8.046731461 23.17982616 1.000000001 0.718511908 0.397486962 0.103283656 5677.244703 2816032.772 0.103437731 0.026707507 8.98E-09 8.046731461 -0.281488093 KRES(ph)ESESDETPPAAPQLIK ddPTM_HeLa_A486_30min_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KRES(0.577)ES(0.325)ES(0.084)DET(0.014)PPAAPQLIK 163.18 1.16E-13 549510000 824060 814590 329270 359060 706020 986730 1031300 1007900 677680 1312900 TRUE FALSE FALSE 766297.6495 750038.9217 456772.1622 835909.8259 617464.3882 864997.2849 773257.832 778423.1723 736421.848 984141.2945 0.778645967 0.762125242 0.464132706 0.849379891 0.627414368 0.878936073 0.785718307 0.790966883 0.748288739 1 19.90850593 -6.265112391 24.93890038 0.824275949 0.695596243 0.272751811 0.116376043 477.6201984 3242920.211 0.039083342 0.035782231 5.43E-07 6.265112391 -0.128679707 KRESES(ph)ES(ph)DETPPAAPQLIK ddPTM_HeLa_A485_30min_R1 2 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.222)ES(0.887)ES(0.883)DET(0.007)PPAAPQLIK;KRES(0.166)ES(0.841)ES(0.814)DET(0.18)PPAAPQLIK ; 183.49 2.10E-18 3877600000 1069860 636900 453210 1876820 1072790 928220 1610730 1234250 805040 2456100 TRUE FALSE FALSE 1307846.666 711379.9147 620871.2386 1979345.924 965979.2608 976820.1639 1266584.377 931548.2523 966604.1437 1843839.471 0.709306144 0.385814452 0.336727382 1.073491459 0.523895532 0.529775059 0.686927684 0.505221993 0.524234435 1 20.81428163 -10.74610643 2.63620584 1.0889346 0.584353998 0.287120848 0.195611114 41464766.29 32138683.88 24069945.84 0.051955075 1.79E-11 10.74610643 -0.504580602 KRESES(ph)ES(ph)DETPPAAPQLIK ddPTM_HeLa_A486_30min_R1 3 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.05)ES(0.79)ES(0.623)DET(0.537)PPAAPQLIK;KRES(0.445)ES(0.618)ES(0.8)DET(0.137)PPAAPQLIK;KRES(0.565)ES(0.718)ES(0.717)DETPPAAPQLIK ;; 193.88 4.77E-19 4317900000 2219370 2100360 907540 1370650 1887260 2721310 3441780 3076880 1842880 3897400 TRUE FALSE FALSE 2063803.624 1933919.824 1258963.793 3190942.469 1650542.253 2385582.44 2580610.241 2376341.592 2002622.322 2921465.672 0.706427477 0.661969039 0.430935679 1.092240275 0.564970613 0.816570416 0.883327251 0.81340733 0.685485488 1 21.47826091 -8.966859644 0.045994516 1.759213278 4.19E-11 0.213327176 0.166710862 228.7346018 3.300122584 72.92757077 52.80297717 1.08E-09 8.966859644 -1.759213278 KRET(ph)DDEGEDD ddPTM_HeLa_A485_30min_R1 11 KRETDDEGEDD 11 2 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD ;;;;;;;;;; 227.42 1.77E-17 19508203000 14752730 9557426 3239666 27218180 4228746 17264700 9878744 12558090 9905871 20061940 TRUE FALSE FALSE 18034423.89 10675083.83 4438153.267 28705040.25 3807717.2 18168653 7768069.642 9478198.737 11893888.45 15060867.57 1.197435925 0.708796076 0.294681116 1.905935373 0.252821903 1.206348367 0.515778364 0.629326212 0.789721335 1 23.84430154 -6.784617108 24.99719099 0.702817147 0.902740716 0.03703683 0.463834303 930.8370701 1003898.392 0.186312724 0.125699831 1.64E-07 6.784617108 0.199923569 KRET(ph)DDEGEDD ddPTM_HeLa_A486_30min_R1 7 KRETDDEGEDD 11 2 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD;KRET(1)DDEGEDD ;;;;;; 216.54 4.72E-17 6318103000 4810885 2027964 3745424 3050058 1823359 11638698 4272473 4306421 8546582 9449287 TRUE FALSE FALSE 4473666.805 1867260.747 5195752.479 7100689.165 1594656.312 10202833.77 3203455.066 3325942.947 9287406.609 7083124.031 0.631595153 0.263621072 0.733539672 1.002479857 0.225134602 1.440442625 0.452265844 0.469558761 1.31120203 1 22.75595437 -4.136248038 0.196383172 1.034618328 1.95E-12 0.142373323 0.371755344 34.6548002 1.216794881 0.854483576 8.9895239 7.31E-05 4.136248038 -1.034618328 KREVS(ph)PPGAR ddPTM_HeLa_A485_30min_R1 2 KREVSPPGAR 10 2 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 KREVS(1)PPGAR;KREVS(1)PPGAR ; 72.175 0.008933 977050000 409070 566190 458170 399530 624250 626940 706620 887070 452470 540720 TRUE FALSE FALSE 500066.2102 632400.9953 627666.149 421355.3122 562097.4781 659765.609 555644.8644 669514.6916 543276.5787 405928.4552 1.231907258 1.557912453 1.546248214 1.038003882 1.384720561 1.625324858 1.368824622 1.649341609 1.338355495 1 18.63086595 -8.024116766 23.79616449 0.99999999 1.428611941 0.339943638 0.177409932 1364.911167 1346766.112 0.172834803 0.044625754 9.46E-09 8.024116766 0.428611951 KREVS(ph)PPGAR ddPTM_HeLa_A486_30min_R1 3 KREVSPPGAR 10 2 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 KREVS(1)PPGAR;KREVS(1)PPGAR;KREVS(1)PPGAR ;; 72.496 0.0055443 674887000 250401 207872 173887 84668 233692 203004 246912 254149 170569 261183 TRUE FALSE FALSE 232849.183 191399.4657 241220.7033 197111.3829 204380.1703 177959.4305 185132.006 196284.8207 185354.0583 195781.0768 1.189334469 0.977619844 1.232094068 1.006794866 1.043921985 0.908971558 0.945607252 1.002572996 0.946741438 1 17.5788818 -5.679390718 2.01520341 0.963729165 1.116067502 0.475641575 0.072356441 0.279859155 2.330692418 0.022857016 0.03154462 2.09E-06 5.679390718 0.152338337 KRFVS(ph)EGDGGR ddPTM_HeLa_A485_30min_R1 7 KRFVSEGDGGR 11 2 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR ;;;;;; 182.52 1.25E-10 16463490000 7288664 17580270 10975762 6034421 15378950 16178840 18151950 26488760 9733217 7364251 TRUE FALSE FALSE 8910002.161 19636129.65 15036153.1 6364066.139 13847767.74 17025939.05 14273637.59 19992350.08 11686584.37 5528478.755 1.611655314 3.551814255 2.719763206 1.151142371 2.504806178 3.079678841 2.581838192 3.616247971 2.113887905 1 22.39845112 -5.99692443 24.99258386 2.664307305 2.314415896 0 0.877550277 415.1966801 3373901.513 0.269454134 0.303937523 1.01E-06 5.99692443 -0.349891409 KRFVS(ph)EGDGGR ddPTM_HeLa_A486_30min_R1 6 KRFVSEGDGGR 11 2 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR;KRFVS(1)EGDGGR ;;;;; 148.21 5.42E-07 12925270000 15507900 11333710 8495640 4558320 14808380 9266080 13764070 13927780 7089260 15716080 TRUE FALSE FALSE 14420876.29 10435585.54 11785379.33 10611999.32 12950974.9 8122925.26 10320154.1 10756728.54 7703762.765 11780671.27 1.224113292 0.885822658 1.000399642 0.900797508 1.099340997 0.689512938 0.876024283 0.913082819 0.653932411 1 23.48991841 -6.253312465 24.99571537 0.824172777 1.006580115 0.356555131 0.130521895 721.3493586 2218634.957 0.041377668 0.040695081 5.58E-07 6.253312465 0.182407338 KRGFGFVTFDDHDPVDK ddPTM_HeLa_A485_30min_R1 1 KRGFGFVTFDDHDPVDK 17 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 149.57 4.16E-08 230600000 80474 204310 106030 144240 161950 231650 299680 369360 129930 212470 FALSE FALSE TRUE 98375.16367 228202.2772 145254.9093 152119.466 145825.6894 243778.8358 235650.9198 278773.8809 156005.7592 159505.1392 0.616752314 1.430689183 0.910659744 0.95369633 0.914238187 1.52834471 1.477387631 1.747742312 0.97806102 1 17.28324338 -6.256874912 24.94980227 1.401233564 0.987397352 0.294358364 0.287810788 442.4592949 2418527.407 0.092557821 0.089606137 5.54E-07 6.256874912 -0.413836212 KRGHT(ph)ASESDEQQWPEEK ddPTM_HeLa_A485_30min_R1 1 KRGHTASESDEQQWPEEK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 KRGHT(0.445)AS(0.445)ES(0.11)DEQQWPEEK 106.69 0.00013158 166490000 53018 64887 36076 71131 65201 62377 88923 97849 44102 90606 TRUE FALSE FALSE 64811.67119 72474.97021 49422.01365 75016.70642 58709.35951 65642.96327 69923.87462 73851.37933 52952.86687 68019.59168 0.952838287 1.065501401 0.72658498 1.102869108 0.863124257 0.965059649 1.027996095 1.085736881 0.778494336 1 16.05366273 -6.518559023 24.33929688 0.982533896 0.942794677 0.012186672 0.121873098 698.8051882 3937444.635 0.043894129 0.034879734 3.03E-07 6.518559023 -0.039739219 KRGHT(ph)ASESDEQQWPEEK ddPTM_HeLa_A486_30min_R1 2 KRGHTASESDEQQWPEEK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 KRGHT(0.489)AS(0.489)ES(0.022)DEQQWPEEK;KRGHT(0.496)AS(0.496)ES(0.008)DEQQWPEEK ; 141.47 6.09E-08 517320000 302110 216820 109631 78555 210400 211953 285440 265730 152428 329280 TRUE FALSE FALSE 280933.6491 199638.3936 152083.0592 182880.0099 184009.6701 185804.3938 214019.8929 205229.0798 165640.5818 246826.1447 1.138184326 0.808821909 0.616154579 0.740926413 0.745503157 0.752774363 0.867087614 0.831472209 0.671081996 1 17.91313569 -4.273185482 4.580035258 0.768604987 1.158314896 0.529118564 0.100872095 0.130810222 7.180970655 0.024489429 0.160852579 5.33E-05 4.273185482 0.389709909 KRGHTAS(ph)ESDEQQWPEEK ddPTM_HeLa_A485_30min_R1 1 KRGHTASESDEQQWPEEK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 KRGHT(0.285)AS(0.688)ES(0.028)DEQQWPEEK 160.57 2.64E-12 519230000 457040 502380 263940 526250 479590 486270 683680 818910 367770 683020 TRUE FALSE FALSE 558706.9712 561128.9709 361582.3895 554997.705 431840.3357 511730.3453 537606.1828 618071.0385 441578.0656 512755.6841 1.089616339 1.094339835 0.705174805 1.082382355 0.842195122 0.998000337 1.048464599 1.205390906 0.861186096 1 18.96791205 -6.530504049 9.390565341 1.042790121 0.95818805 0.044387214 0.137836296 0.434317956 393.9471587 0.051073055 0.040527678 2.95E-07 6.530504049 -0.08460207 KRGHTAS(ph)ESDEQQWPEEK ddPTM_HeLa_A486_30min_R1 1 KRGHTASESDEQQWPEEK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 KRGHT(0.099)AS(0.732)ES(0.17)DEQQWPEEK 146.97 1.95E-08 368540000 119730 87735 46504 33273 80746 87810 116060 122780 64115 140980 TRUE FALSE FALSE 111337.5453 80782.55907 64511.59422 77461.22552 70618.08375 76976.89499 87020.56044 94825.67427 69672.53982 105677.6904 1.053557708 0.764423965 0.610456133 0.732995065 0.668240227 0.728411973 0.82345252 0.897310245 0.659292795 1 16.68931132 -10.36575647 7.696610146 1.000003076 0.765873883 0.237543424 0.122835601 6.59E-06 5.43E-07 0.120829813 0.029305149 4.31E-11 10.36575647 -0.234129193 KRGHTAS(ph)ESDEQQWPEEKR ddPTM_HeLa_A485_30min_R1 1 KRGHTASESDEQQWPEEKR 19 3 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 KRGHT(0.006)AS(0.99)ES(0.004)DEQQWPEEKR 145.25 2.19E-08 193970000 104160 191030 92498 91029 156860 195650 226930 363870 106490 117900 TRUE FALSE FALSE 127330.0327 213369.2968 126716.8594 96001.68377 141242.4676 205893.9315 178444.5517 274630.312 127861.5662 88509.69979 1.438599757 2.410688289 1.431672005 1.084645909 1.595785185 2.326230142 2.016101649 3.10282729 1.444605128 1 16.43354795 -6.24505128 23.09216573 2.111763822 1.600620968 0.070891719 0.607925226 610.557903 860324.497 0.196776116 0.196050057 5.69E-07 6.24505128 -0.511142854 KRGHTAS(ph)ESDEQQWPEEKR ddPTM_HeLa_A486_30min_R1 2 KRGHTASESDEQQWPEEKR 19 3 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 KRGHT(0.005)AS(0.993)ES(0.002)DEQQWPEEKR;KRGHT(0.016)AS(0.933)ES(0.051)DEQQWPEEKR ; 152.4 1.12E-08 169699000 307720 146025 102895 73828 217510 159603 219880 219030 103965 271000 TRUE FALSE FALSE 286150.4171 134453.4472 142738.6996 171875.3151 190227.8676 139912.8046 164863.6983 169161.6504 112976.7699 203139.8361 1.408637629 0.66187632 0.702662276 0.846093599 0.936438028 0.688751194 0.811577392 0.832734995 0.556152708 1 17.63211366 -4.254845204 24.78397061 0.778972404 1.408637952 0.689207043 0.12626584 373.6739564 1404398.439 0.030267325 0.28271606 5.56E-05 4.254845204 0.629665548 KRGPRT(ph)PPITTK ddPTM_HeLa_A485_30min_R1 2 KRGPRTPPITTK 12 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KRGPRT(1)PPITTK;KRGPRT(1)PPITTK ; 88.561 0.0029375 612080000 907500 1074970 606160 960580 1068110 1569770 1935890 2567700 831210 1327710 TRUE FALSE FALSE 1109370.244 1200678.391 830403.8084 1013054.053 961765.218 1651960.73 1522271.287 1937967.549 998026.2227 996736.3317 1.113002716 1.204609837 0.833122845 1.016371151 0.964914379 1.657369835 1.527255743 1.944313142 1.001294115 1 19.92685239 -6.253331502 24.7527677 1.491391715 1.025009236 0.32189466 0.28215952 542.0587649 1654867.453 0.090265844 0.08875892 5.58E-07 6.253331502 -0.466382478 KRGPRT(ph)PPITTK ddPTM_HeLa_A486_30min_R1 1 KRGPRTPPITTK 12 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KRGPRT(1)PPITTK 65.467 0.022769 281630000 378570 274520 153580 168690 338280 344140 456440 469030 225820 565240 TRUE FALSE FALSE 352034.1979 252766.0354 213050.289 392718.8451 295849.7681 301683.5058 342233.8843 362242.1079 245394.2594 423700.2249 0.830856764 0.596568094 0.502832608 0.92687901 0.698252563 0.712021113 0.807726464 0.854949057 0.579169528 1 18.69268437 -14 0.208162053 2.276590008 0.685369734 0.275781524 0.129789081 193.1842519 1.923708534 103.2480395 0.28424089 1.00E-14 14 -1.591220274 KRHAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK ddPTM_HeLa_A485_30min_R1 1 KRHAPSPEPAVQGTGVAGVPEESGDAAAIPAK 32 2 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 KRHAPS(0.845)PEPAVQGT(0.155)GVAGVPEESGDAAAIPAK 83.088 0.00022886 347810000 50026 311860 71048 19485 78407 325080 273310 654780 59892 29927 TRUE FALSE FALSE 61154.11111 348329.3142 97331.61175 20549.41621 70600.52378 342100.6861 214915.0858 494194.1783 71911.77504 22466.74967 2.72198302 15.50421487 4.332251581 0.914659064 3.142444939 15.22697725 9.565918033 21.99669225 3.200809023 1 14.4555038 -2.874752437 16.72610969 8.402909233 5.837458941 0 7.054037394 0 0 1.622063775 0 0.001334282 2.874752437 -2.565450292 KRHCAPS(ph)PDRS(ph)PELSSSR ddPTM_HeLa_A485_30min_R1 3 KRHCAPSPDRSPELSSSR 18 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 KRHCAPS(1)PDRS(0.995)PELS(0.002)S(0.002)S(0.002)R;KRHCAPS(1)PDRS(1)PELSSSR;KRHCAPS(1)PDRS(1)PELSSSR ;; 148.29 2.30E-08 894950000 305747 581760 329185 346794 509270 809710 790210 1359620 349916 461539 TRUE FALSE FALSE 373759.3653 649791.7714 450964.23 365738.4781 458565.2906 852105.1636 621375.1781 1026171.063 420140.9316 346485.8213 1.078714748 1.875377667 1.301537328 1.055565497 1.323474909 2.459278594 1.793363941 2.96165384 1.212577559 1 18.40243679 -6.232320411 23.89807101 2.002227466 1.340915973 0.179886788 0.569096145 580.8922198 476740.6193 0.177585058 0.177547274 5.86E-07 6.232320411 -0.661311492 KRHCAPS(ph)PDRS(ph)PELSSSR ddPTM_HeLa_A486_30min_R1 1 KRHCAPSPDRSPELSSSR 18 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 KRHCAPS(1)PDRS(1)PELSSSR 99.366 0.00021552 148910000 85990 52195 48842 36857 82282 67351 71982 88055 34694 105150 TRUE FALSE FALSE 79962.54505 48058.87811 67754.93043 85804.95865 71961.42431 59041.91839 53971.34225 68006.79873 37701.30385 78819.75559 1.014498769 0.609731377 0.859618632 1.088622491 0.912987154 0.749075127 0.684743842 0.862814129 0.478323024 1 16.26626966 -6.270306214 20.40734356 0.742026495 0.88968598 0.145903069 0.169995892 107.2704193 246881.8961 0.05875397 0.052870733 5.37E-07 6.270306214 0.147659485 KRHCAPS(ph)PDRSPELSSSR ddPTM_HeLa_A485_30min_R1 1 KRHCAPSPDRSPELSSSR 18 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 KRHCAPS(0.999)PDRS(0.001)PELSSSR 87.319 0.00085413 42725000 7609.6 21393 11582 5623.2 12552 19187 22680 44051 11665 8745.4 TRUE FALSE FALSE 9302.329267 23894.72526 15866.66377 5930.381177 11302.27881 20191.60165 17834.23272 33247.42318 14006.0585 6565.332727 1.416886189 3.639529975 2.416734144 0.903287225 1.721508913 3.075487944 2.716424812 5.064088076 2.133335672 1 12.68065241 -6.274027855 23.40535199 3.046782819 2.069632841 0.080063607 1.170293712 687.765906 1278735.392 0.410016038 0.364438307 5.32E-07 6.274027855 -0.977149978 KRHS(ph)FTSLTMANK ddPTM_HeLa_A485_30min_R1 2 KRHSFTSLTMANK 13 2 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 KRHS(0.961)FT(0.036)S(0.004)LTMANK;KRHS(0.947)FT(0.053)SLTMANK ; 206.8 4.91E-22 2842000000 2276800 2739100 1782460 2212100 3075600 3060500 3751100 5145400 2787200 3497800 TRUE FALSE FALSE 2783266.305 3059413.918 2441866.128 2332941.422 2769382.465 3220743.048 2949646.841 3883482.582 3346565.474 2625862.832 1.059943524 1.165108048 0.92992905 0.888447558 1.05465618 1.226546569 1.123305759 1.478935813 1.274463172 1 21.32436013 -6.271609875 2.818570988 1.251709098 1.011108718 0.352904221 0.134150961 0.290000882 4.62271418 0.051365376 0.047344462 5.35E-07 6.271609875 -0.24060038 KRHS(ph)FTSLTMANK ddPTM_HeLa_A486_30min_R1 2 KRHSFTSLTMANK 13 2 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 KRHS(0.498)FT(0.498)S(0.003)LTMANK;KRHS(0.941)FT(0.059)SLTMANK ; 198.95 9.37E-22 2994800000 5917300 4493900 3080200 976830 5254300 5126700 6005100 6009500 4104000 5552900 TRUE FALSE FALSE 5502527.827 4137786.997 4272935.931 2274109.606 4595256.7 4494219.878 4502560.465 4641268.036 4459738.024 4162417.697 1.321954746 0.994082598 1.026551452 0.546343441 1.103987402 1.079713812 1.081717596 1.115041395 1.071429719 1 21.98899032 KRHS(ph)STGDSADAGPPAAGSAR ddPTM_HeLa_A485_30min_R1 4 KRHSSTGDSADAGPPAAGSAR 21 2 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 KRHS(0.326)S(0.326)T(0.326)GDS(0.022)ADAGPPAAGSAR;KRHS(0.25)S(0.25)T(0.25)GDS(0.25)ADAGPPAAGSAR;KRHS(0.319)S(0.319)T(0.319)GDS(0.043)ADAGPPAAGSAR;KRHS(0.25)S(0.25)T(0.25)GDS(0.25)ADAGPPAAGSAR ;;; 114.72 2.50E-05 197117600 135802.3 290596 212957 63207 285686 279475 307951 453595 210465 142221.9 TRUE FALSE FALSE 166011.0531 324578.6744 291738.6562 66659.83836 257242.0987 294107.8788 242154.7531 342350.115 252703.395 106768.5977 1.554867786 3.040020018 2.732438773 0.624339364 2.409342299 2.75462903 2.268033469 3.206468216 2.366832574 1 16.70412787 -5.968143092 24.99601194 2.468133789 2.041321759 0.025616739 0.809472276 642.2559128 503933.1837 0.250831704 0.284414472 1.08E-06 5.968143092 -0.426812031 KRHS(ph)STGDSADAGPPAAGSAR ddPTM_HeLa_A486_30min_R1 2 KRHSSTGDSADAGPPAAGSAR 21 2 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 KRHS(0.319)S(0.319)T(0.319)GDS(0.044)ADAGPPAAGSAR;KRHS(0.312)S(0.312)T(0.312)GDS(0.063)ADAGPPAAGSAR ; 113.26 2.93E-05 71335000 109024 85469 68212 7737.8 129358 63511 78202 89866 71838 60975 TRUE FALSE FALSE 101381.9806 78696.12517 94625.51318 18013.98945 113132.7134 55675.65855 58635.03246 69405.47356 78064.97568 45706.46312 2.218110387 1.721772366 2.070287367 0.394123461 2.475201661 1.218113474 1.282860857 1.51850458 1.707963609 1 15.48011056 KRKGS(ph)DDDGGDS(ph)PVQDIDTPEVDLYQLQVNTLR ddPTM_HeLa_A486_30min_R1 1 KRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLR 33 3 O75446 O75446 SAP30 Histone deacetylase complex subunit SAP30 2 0 KRKGS(1)DDDGGDS(1)PVQDIDTPEVDLYQLQVNTLR 202.99 2.14E-29 91750000 16118 12460 4961.6 7882.6 12731 17577 20962 14568 13626 22600 TRUE FALSE FALSE 14988.21143 11472.62422 6882.864396 18351.09116 11134.15927 15408.52845 15717.08589 11251.18442 14807.11265 16940.8129 0.884739801 0.677218047 0.406288909 1.083247379 0.657238784 0.909550713 0.927764564 0.664146667 0.874049713 1 14.04821548 -5.26554952 24.99575727 0.85444558 0.65819584 0.262164106 0.165099451 515.077919 3132442.014 0.045192025 0.069877935 5.43E-06 5.26554952 -0.19624974 KRKHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_A485_30min_R1 2 KRKHSPSPPPPTPTESR 17 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 KRKHS(1)PS(0.998)PPPPT(0.001)PTESR;KRKHS(1)PS(0.998)PPPPT(0.001)PTESR ; 78.708 0.0024578 241889000 129178 281840 67566 83097 82533 413950 442560 1118160 91081 113219 TRUE FALSE FALSE 157913.2004 314798.7363 92561.47506 87636.3787 74315.72473 435623.7819 348003.4406 843929.5068 109360.1213 84995.58694 1.857898817 3.703706835 1.08901507 1.031069751 0.874348039 5.125251764 4.094370698 9.929097935 1.286656463 1 16.37510032 -6.268222108 24.50427123 4.833100123 1.749550386 0.202521882 2.437604488 551.1880053 1991295.317 0.819943836 0.739636203 5.39E-07 6.268222108 -3.083549737 KRKLS(ph)GDQPAAR ddPTM_HeLa_A485_30min_R1 2 KRKLSGDQPAAR 12 3 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KRKLS(1)GDQPAAR;KRKLS(1)GDQPAAR ; 120.21 0.00074568 2858800000 341270 1677580 419080 109569 596760 2083940 2072420 6511900 357710 184370 TRUE FALSE FALSE 417184.3341 1873758.388 574115.1314 115554.477 537344.479 2193051.876 1629630.537 4914846.315 429499.1159 138409.9521 3.014120935 13.5377432 4.147932448 0.834871158 3.882267648 15.84461119 11.77394047 35.50934193 3.103094174 1 17.07858816 -6.200411214 24.99697537 10 5.265073371 0.11213432 9.554533004 873.5649849 357809.0287 3.324837055 3.32483654 6.30E-07 6.200411214 -4.734926629 KRKPS(ph)PEPEGEVGPPK ddPTM_HeLa_A485_30min_R1 2 KRKPSPEPEGEVGPPK 16 3 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 KRKPS(1)PEPEGEVGPPK;KRKPS(1)PEPEGEVGPPK ; 167.16 2.94E-11 3342050000 3166280 2705950 1442920 2863550 2764590 4163000 6265100 6668500 2400900 4003800 TRUE FALSE FALSE 3870608.062 3022387.314 1976716.153 3019978.486 2489337.713 4380968.243 4926510.204 5033039.919 2882738.608 3005726.344 1.287744664 1.005543076 0.657650074 1.004741663 0.828198388 1.457540621 1.639041496 1.674483749 0.959082191 1 21.51928223 -6.26652287 24.74292869 1.406498109 0.945531573 0.334879582 0.267353639 377.8502724 1839108.363 0.09294993 0.084474657 5.41E-07 6.26652287 -0.460966536 KRKPS(ph)PEPEGEVGPPK ddPTM_HeLa_A486_30min_R1 2 KRKPSPEPEGEVGPPK 16 3 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 KRKPS(1)PEPEGEVGPPK;KRKPS(1)PEPEGEVGPPK ; 161.8 4.34E-11 5921200000 4299390 2557430 993700 1561320 2159290 2419680 3831070 3811670 1825240 5859000 TRUE FALSE FALSE 3998024.963 2354769.933 1378487.252 3634831.865 1888451.714 2121164.483 2872495.765 2943835.949 1983453.273 4391868.264 0.910324427 0.536165885 0.313872632 0.827627708 0.429988242 0.482975434 0.654048708 0.670292407 0.451619483 1 22.06640335 -10.5660905 2.698507934 1.028243953 0.580756344 0.335032823 0.174680498 24930539.2 24255601.34 5066427.453 0.043315615 2.72E-11 10.5660905 -0.447487609 KRKS(ph)ELEFETLK ddPTM_HeLa_A485_30min_R1 1 KRKSELEFETLK 12 3 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 KRKS(0.999)ELEFET(0.001)LK 145.46 1.11E-06 5662800000 213330 123550 106050 358940 196350 181660 292560 276770 139540 512210 TRUE FALSE FALSE 260784.5225 137998.0978 145282.3081 378547.9833 176800.7046 191171.4367 230052.166 208891.7235 167544.3981 384525.4735 0.6781983 0.358878949 0.377822324 0.984454891 0.459789316 0.497161956 0.59827549 0.543245475 0.435717292 1 18.55271965 -10.31767068 3.369962169 1.002237006 0.547654717 0.381638296 0.172539008 92029715.48 131702518.7 2090482.049 0.044301889 4.81E-11 10.31767068 -0.454582289 KRKS(ph)ELEFETLK ddPTM_HeLa_A486_30min_R1 1 KRKSELEFETLK 12 3 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 KRKS(1)ELEFETLK 209.67 1.09E-16 5919800000 3688900 2431900 939720 1895100 1967900 4288200 5414700 4848700 2104700 5905500 TRUE FALSE FALSE 3430327.159 2239187.387 1303604.751 4411888.573 1721067.632 3759165.483 4059884.789 3744756.856 2287137.091 4426724.362 0.774913204 0.505833931 0.294485187 0.996648585 0.388790332 0.849198002 0.917130695 0.845943084 0.516665802 1 22.07780811 -6.297701755 24.73437888 0.821867962 0.593276683 0.225039938 0.21673 837.053363 570947.0422 0.074840856 0.066005489 5.04E-07 6.297701755 -0.228591279 KRLS(ph)ELGITQADDNLMSQEMFVGIVGNQFK ddPTM_HeLa_A485_30min_R1 1 KRLSELGITQADDNLMSQEMFVGIVGNQFK 30 2 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 KRLS(0.333)ELGIT(0.333)QADDNLMS(0.333)QEMFVGIVGNQFK 83.216 0.00056113 60366000 21335 24653 24852 25407 31024 20712 29617 37318 25879 30175 TRUE FALSE FALSE 26080.89715 27535.9539 34045.78898 26794.92008 27935.14163 21796.44829 23289.086 28165.70199 31072.67792 22652.92783 1.151325663 1.215558276 1.502931066 1.182845779 1.23318018 0.962191221 1.028082823 1.24335813 1.371684851 1 14.46740991 -5.784087764 2.682252545 1.131209486 1.28386933 0.171777836 0.144483914 0.508586725 7.494452762 0.049968821 0.062000939 1.64E-06 5.784087764 0.152659844 KRLS(ph)IIGPTSR ddPTM_HeLa_A485_30min_R1 1 KRLSIIGPTSR 11 2 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 KRLS(1)IIGPTSR 131.56 2.71E-05 383830000 258610 335480 272510 228100 369290 326830 388300 519630 292010 313740 TRUE FALSE FALSE 316136.9023 374711.4677 373322.7891 240560.5254 332522.1909 343942.3134 305336.5329 392189.9278 350613.7285 235530.392 1.342234009 1.590926184 1.58503022 1.021356622 1.411801629 1.46028846 1.296378486 1.665135121 1.488613531 1 17.84555371 -11.1772272 2.068571446 0.000102262 1.429888536 0.35394202 0.173910775 1817841.725 372604.3172 8507921.404 0.04462522 6.65E-12 11.1772272 1.429786274 KRLS(ph)IIGPTSR ddPTM_HeLa_A486_30min_R1 1 KRLSIIGPTSR 11 2 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 KRLS(1)IIGPTSR 79.652 0.0097564 0 330720 305140 211810 142120 309850 311240 404310 399920 263420 407360 TRUE FALSE FALSE 307538.2358 280959.5951 293828.5045 330862.5423 270985.7238 272842.3733 303147.3616 308866.9462 286253.4577 305354.4045 1.007151792 0.920109849 0.962254024 1.083536171 0.887446586 0.893526896 0.992772192 1.011503164 0.937446631 1 18.22012513 -10.09997886 4.752318904 1.000001805 0.965835023 0.030502737 0.057144163 1.11E-06 2.11E-07 0.056377957 0.013672941 7.94E-11 10.09997886 -0.034166781 KRLS(ph)PDQMK ddPTM_HeLa_A485_30min_R1 3 KRLSPDQMK 9 2 Q86TC9;Q86TC9-3 Q86TC9 MYPN Myopalladin 1 0 KRLS(1)PDQMK;KRLS(1)PDQMK;KRLS(1)PDQMK ;; 75.479 0.007963 1171330000 1093530 981650 679470 1224690 1301230 1276110 1769150 2005240 1009910 1651280 TRUE FALSE FALSE 1336781.976 1096445.428 930834.2281 1291591.714 1171674.972 1342925.146 1391156.65 1513451.746 1212589.674 1239646.286 1.078357586 0.884482486 0.750886958 1.041903427 0.945168784 1.083313169 1.122220642 1.22087386 0.978173926 1 20.2414971 -6.094914243 1.696338823 1.100515062 0.916413537 0.297587846 0.104790687 0.405141919 2.333249762 0.042101868 0.043369388 8.04E-07 6.094914243 -0.184101524 KRLS(ph)PDQMK ddPTM_HeLa_A486_30min_R1 1 KRLSPDQMK 9 2 Q86TC9;Q86TC9-3 Q86TC9 MYPN Myopalladin 1 0 KRLS(1)PDQMK 53.034 0.020504 131310000 24733 30245 26545 13669 51643 43716 49051 42596 32769 41995 TRUE FALSE FALSE 22999.34442 27848.27605 36823.9349 31822.12279 45165.45339 38322.76439 36777.92099 32897.82066 35609.4433 31479.17866 0.730620855 0.884657009 1.16978703 1.010894316 1.434772294 1.217400391 1.168325304 1.045066043 1.131206239 1 14.94211028 -4.591195076 2.234604052 1.161434078 0.719555816 0.572019776 0.11988914 0.253580543 2.23719258 0.033367822 0.168529321 2.56E-05 4.591195076 -0.441878262 KRLS(ph)QSDEDVIR ddPTM_HeLa_A485_30min_R1 3 KRLSQSDEDVIR 12 2 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 0 KRLS(0.996)QS(0.004)DEDVIR;KRLS(1)QSDEDVIR;KRLS(0.953)QS(0.047)DEDVIR ;; 127.29 2.63E-05 1938250000 1434870 1796040 1281990 1559410 1982490 2045160 2483090 2817850 1485260 2093960 TRUE FALSE FALSE 1754051.881 2006071.255 1756251.449 1644596.62 1785106.335 2152241.415 1952557.537 2126767.869 1783338.058 1571974.308 1.115827321 1.276147609 1.11722656 1.046198154 1.135582385 1.369132691 1.242105247 1.35292788 1.134457509 1 20.58414621 KRLS(ph)QSDEDVIR ddPTM_HeLa_A486_30min_R1 2 KRLSQSDEDVIR 12 2 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 0 KRLS(0.992)QS(0.008)DEDVIR;KRLS(0.995)QS(0.005)DEDVIR ; 129.15 2.29E-05 602390000 438290 412040 293520 211240 490920 403910 498520 556950 306170 545500 TRUE FALSE FALSE 407568.1343 379388.4498 407178.8047 491777.3955 429344.236 354079.6909 373785.0232 430144.6431 332709.0621 408903.2494 0.996734888 0.927819601 0.995782756 1.202674217 1.049989788 0.865925354 0.91411605 1.051947236 0.813662065 1 18.6414 -6.242206101 24.3290533 0.93143846 1.035848917 0.256472186 0.089734358 914.4193237 1156691.021 0.031081142 0.031031449 5.73E-07 6.242206101 0.104410457 KRLS(ph)VELTSSLFR ddPTM_HeLa_A485_30min_R1 1 KRLSVELTSSLFR 13 2 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0;A0A2R8Y7Z0;A0A2R8YG06 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 KRLS(1)VELTSSLFR 133.16 1.11E-05 189730000 104170 171090 97209 93509 129580 181730 194890 254130 130930 194870 TRUE FALSE FALSE 127342.2571 191097.4872 133170.6543 98617.15989 116678.5602 191245.1018 153250.1594 191804.219 157206.45 146292.4953 0.870463361 1.306269927 0.910304073 0.674109493 0.797570374 1.307278965 1.047559952 1.311100878 1.074603654 1 17.15849624 -6.258082117 24.99600977 1.161268198 0.920379734 0.303656727 0.178171919 405.2824998 3017477.678 0.063545704 0.061098965 5.52E-07 6.258082117 -0.240888464 KRLS(ph)VELTSSLFR ddPTM_HeLa_A486_30min_R1 2 KRLSVELTSSLFR 13 2 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0;A0A2R8Y7Z0;A0A2R8YG06 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 KRLS(1)VELTSSLFR;KRLS(1)VELTSSLFR ; 106.57 0.00028371 336960000 296400 273210 256530 119762 411720 256170 270570 301680 274360 402000 TRUE FALSE FALSE 275623.8906 251559.8446 355865.2861 278811.9884 360078.2385 224566.3499 202870.5242 232994.0496 298141.7457 301336.5834 0.914671188 0.834813489 1.180956132 0.925251044 1.194937018 0.745234274 0.673235629 0.773202002 0.989397777 1 18.20101631 -6.287763316 24.85477708 0.81185291 1.005161556 0.26362124 0.142330375 903.2540478 852839.4962 0.050309838 0.044382608 5.16E-07 6.287763316 0.193308647 KRLS(ph)VER ddPTM_HeLa_A485_30min_R1 2 KRLSVER 7 2 P11388;P11388-2;P11388-3;P11388-4;J3KTB7 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 KRLS(1)VER;KRLS(1)VER ; 80.755 0.0085538 3082500000 2997300 3624400 2907700 2894200 4178900 3623300 4131600 5399600 3282200 3961700 TRUE FALSE FALSE 3664039.044 4048242.052 3983379.229 3052302.817 3762834.043 3813010.385 3248849.908 4075339.634 3940907.434 2974121.1 1.231973723 1.361155755 1.339346683 1.026287335 1.26519194 1.282062921 1.092373108 1.370266878 1.32506623 1 21.50403196 -11.2919033 2.042025796 3.06E-05 1.253466433 0.333637982 0.108036988 2195407.771 365400.9138 10080628.79 0.0278777 5.11E-12 11.2919033 1.253435856 KRLS(ph)VER ddPTM_HeLa_A486_30min_R1 3 KRLSVER 7 2 P11388;P11388-2;P11388-3;P11388-4;J3KTB7 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 KRLS(1)VER;KRLS(1)VER;KRLS(1)VER ;; 93.598 0.0042492 3868600000 6009900 6615100 4995500 2356200 6350300 5885400 7276600 6856700 5810700 6961100 TRUE FALSE FALSE 5588637.045 6090895.384 6929891.384 5485352.676 5553786.16 5159319.186 5455917.716 5295579.091 6314376.155 5217995.251 1.071031455 1.167286494 1.328075449 1.051237575 1.064352475 0.988755056 1.045596528 1.014868515 1.210115351 1 22.3150642 -5.40613046 24.89894691 1.051584003 1.187153737 0.36406479 0.081869268 19.76441432 4174.990113 0.02298132 0.034086804 3.93E-06 5.40613046 0.135569734 KRNDS(ph)EEEERER ddPTM_HeLa_A485_30min_R1 7 KRNDSEEEERER 12 3 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER ;;;;;; 181.51 4.45E-12 4175032000 1008745 1058448 662188 1248567 710110 1091034 1315631 1642369 881502 1392462 TRUE FALSE FALSE 1233136.845 1182224.286 907158.8971 1316773.054 639408.9551 1148158.853 1034535.689 1239575.428 1058411.366 1045346.85 1.179643719 1.130939732 0.867806602 1.259651812 0.611671576 1.098352048 0.989657824 1.185802997 1.012497781 1 19.99555028 -4.545134273 23.78464896 1.007340084 1.167467852 0.119141331 0.167438929 235.3269515 251494.9135 0.040927944 0.108306973 2.85E-05 4.545134273 0.160127767 KRNDS(ph)EEEERER ddPTM_HeLa_A486_30min_R1 6 KRNDSEEEERER 12 3 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER;KRNDS(1)EEEERER ;;;;; 195.23 4.92E-13 2302802100 1823483 1018251.3 895522.9 661500.2 741195.4 1836720 1500067.2 1058202.2 1600540 2280606 TRUE FALSE FALSE 1695666.258 937561.3586 1242293.35 1540005.896 648227.7616 1610124.161 1124734.52 817272.6595 1739276.096 1709527.413 0.99189182 0.548433065 0.726688171 0.900837204 0.379185356 0.941853373 0.657921313 0.47806935 1.0174017 1 20.70516613 -7.791332859 24.98180463 1.008701735 0.700985246 0.292244303 0.190202613 281.5714469 235300.3642 0.172321086 0.044517377 1.62E-08 7.791332859 -0.307716488 KRNEDEDS(ph)PNKLYTLVTYVPVTTFK ddPTM_HeLa_A486_30min_R1 2 KRNEDEDSPNKLYTLVTYVPVTTFK 25 3 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 1 0 KRNEDEDS(1)PNKLYTLVTYVPVTTFK;KRNEDEDS(1)PNKLYTLVTYVPVTTFK ; 244.26 1.76E-48 995200000 1457080 1105030 408100 1078470 984160 1602900 2373800 2048410 926690 2797800 TRUE FALSE FALSE 1354946.216 1017463.398 566127.2493 2510732.663 860717.4759 1405150.495 1779850.133 1582031.759 1007016.235 2097212.669 0.646070013 0.48515032 0.269942699 1.197175994 0.410410202 0.670008586 0.848674128 0.754349705 0.480168869 1 21.00004174 -14 0.086895706 2.03063347 0.362275959 0.156973747 0.246998341 429.7098748 2.605388508 85.11238876 6.507611954 1.00E-14 14 -1.668357511 KRNEDEDSPNKLYTLVTYVPVTTFK ddPTM_HeLa_A486_30min_R1 1 KRNEDEDSPNKLYTLVTYVPVTTFK 25 3 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 0 0 50.215 0.028472 89419000 48228 26215 18008 21147 36986 37280 44918 49963 28131 58647 FALSE FALSE TRUE 44847.46625 24137.62793 24981.17987 49231.28471 32346.871 32680.77264 33679.04131 38587.51558 30569.41773 43961.40947 1.020155331 0.549064014 0.568252478 1.119875029 0.735801499 0.743396834 0.766104675 0.877758835 0.695369373 1 15.42395002 -10.32909989 3.98704239 1.000460197 0.78198787 0.123303224 0.170697797 232482940.7 700.6676135 983625.8683 0.0406717 4.69E-11 10.32909989 -0.218472327 KRPAS(ph)LSTAPSEK ddPTM_HeLa_A485_30min_R1 1 KRPASLSTAPSEK 13 2 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 KRPAS(0.991)LS(0.008)T(0.001)APSEK 61.477 0.018943 288100000 75171 83107 63050 87623 99030 108330 135090 129080 68291 134940 TRUE FALSE FALSE 91892.52961 92825.64072 86374.81873 92409.62262 89170.22548 114001.9913 106226.9179 97422.92761 81996.3773 101301.9414 0.907115188 0.916326375 0.85264722 0.912219661 0.88024202 1.125368278 1.048616803 0.961708396 0.809425527 1 16.6283023 KRPAS(ph)MAVMEGDLVK ddPTM_HeLa_A485_30min_R1 1 KRPASMAVMEGDLVK 15 2 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 KRPAS(1)MAVMEGDLVK 80.534 0.0019252 66139000 127980 90430 55630 118060 102800 104140 153410 140190 85249 159200 TRUE FALSE FALSE 156448.7095 101005.0019 76209.85196 124509.3189 92564.87105 109592.6094 120632.7003 105808.1827 102357.6923 119514.3699 1.30903681 0.845128515 0.637662668 1.041793711 0.774508297 0.916982698 1.009357288 0.885317664 0.856446739 1 16.86682457 -4.258554402 24.69695813 0.880225465 1.309036996 0.553305407 0.114154436 171.3041334 1466364.186 0.028002205 0.189719435 5.51E-05 4.258554402 0.428811531 KRPAS(ph)MAVMEGDLVK ddPTM_HeLa_A486_30min_R1 1 KRPASMAVMEGDLVK 15 2 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 KRPAS(1)MAVMEGDLVK 110.77 0.00010101 269210000 436420 475240 224230 210380 375750 489090 611600 572710 333960 519600 TRUE FALSE FALSE 405829.2117 437580.2516 311057.8611 489775.272 328619.9313 428751.0485 458571.2112 442316.4352 362907.9217 389488.778 1.041953542 1.123473323 0.798631125 1.257482371 0.84372118 1.100804626 1.177366941 1.135633323 0.9317545 1 18.57122224 KRPAS(ph)MAVMEGDLVKK ddPTM_HeLa_A485_30min_R1 1 KRPASMAVMEGDLVKK 16 3 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 KRPAS(1)MAVMEGDLVKK 113.99 0.00084517 1383900000 1154800 757960 379700 857510 1016800 1065100 1874900 2195500 722510 1250200 TRUE FALSE FALSE 1411681.276 846596.8286 520166.8306 904353.6 915563.8218 1120866.989 1474312.298 1657050.183 867511.1297 938548.1482 1.504111727 0.902028127 0.554224982 0.963566549 0.975510765 1.194256247 1.570843543 1.76554627 0.924311802 1 19.84007123 -6.418349299 3.355265175 1.379625572 0.950584912 0.184895059 0.317447372 0.346823006 7.323776611 0.122054213 0.103953441 3.82E-07 6.418349299 -0.42904066 KRPAS(ph)MAVMEGDLVKK ddPTM_HeLa_A486_30min_R1 2 KRPASMAVMEGDLVKK 16 3 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 KRPAS(1)MAVMEGDLVKK;KRPAS(1)MAVMEGDLVKK ; 194.77 9.58E-18 2645800000 2135300 1637760 776570 1023980 1542100 1922790 2726700 2889400 1062840 2427100 TRUE FALSE FALSE 1985626.497 1507977.933 1077278.701 2383877.189 1348675.438 1685575.719 2044450.82 2231546.695 1154967.827 1819338.362 1.091400334 0.828860626 0.592126634 1.310298974 0.741299951 0.926477314 1.123733145 1.226570462 0.634828491 1 20.79498245 -6.548478138 23.96917557 1.016584182 0.904551124 0.025671474 0.230460536 504.0692505 471962.553 0.086347947 0.066887766 2.83E-07 6.548478138 -0.112033058 KRPAS(ph)PSHNGSSGGGYGASK ddPTM_HeLa_A485_30min_R1 2 KRPASPSHNGSSGGGYGASK 20 2 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 0 KRPAS(0.993)PS(0.007)HNGSSGGGYGASK;KRPAS(0.964)PS(0.036)HNGSSGGGYGASK ; 252.66 7.56E-59 3063540000 1400590 1799940 1208850 1019690 2062970 1939930 2350280 2740730 1603670 1845100 TRUE FALSE FALSE 1712146.414 2010427.326 1656053.919 1075393.083 1857573.463 2041501.735 1848123.478 2068561.67 1925511.859 1385150.527 1.236072456 1.451414332 1.195576862 0.776372721 1.341062525 1.47384829 1.334240173 1.493384026 1.390110188 1 20.40161133 -5.971091454 24.99862106 1.373182776 1.171421007 0.140798865 0.201214577 372.0341121 321714.3589 0.063824717 0.072369534 1.07E-06 5.971091454 -0.20176177 KRPAS(ph)PSHNGSSGGGYGASK ddPTM_HeLa_A486_30min_R1 2 KRPASPSHNGSSGGGYGASK 20 2 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 0 KRPAS(0.968)PS(0.032)HNGSSGGGYGASK;KRPAS(0.246)PS(0.246)HNGS(0.246)S(0.246)GGGY(0.017)GASK ; 231.23 2.19E-36 1532223000 1823967 1521790 996515 102921.5 1530502 1351329 1607660 1579380 1353565 1136364 TRUE FALSE FALSE 1696116.332 1401197.818 1382392.296 239606.4534 1338532.168 1184615.767 1205406.464 1219789.652 1470893.104 851811.0579 1.991188441 1.64496317 1.622886065 0.281290612 1.571395623 1.390702499 1.415110138 1.431995559 1.726783294 1 19.70017393 -9.594123728 13.94741957 0.99997292 1.429037937 0.089404997 0.427566166 0 0 0.424908726 0.103055503 2.55E-10 9.594123728 0.429065017 KRPEQQDVSS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 KRPEQQDVSSPAK 13 2 F8W9F9;H0Y7T5;Q9Y3S1-2;Q9Y3S1-4;Q9Y3S1;H0Y493;H0Y7R3;E9PCD1;H0Y7J9 F8W9F9 WNK2 Serine/threonine-protein kinase WNK2 1 0 KRPEQQDVS(0.155)S(0.845)PAK 80.534 0.002241 85045000 294770 260120 115540 142500 239660 287280 364730 328410 196450 398810 TRUE FALSE FALSE 274108.1452 239507.1439 160280.1823 331747.2016 209599.6081 251838.3144 273470.6963 253638.2121 213478.4442 298945.3802 0.916917147 0.801173591 0.536152063 1.109725132 0.701130113 0.8424225 0.914784822 0.848443324 0.714105179 1 18.18952239 -10.67880803 2.734922995 1.023687063 0.820835093 0.121335806 0.144877728 64137894.38 57128316.82 10573908.9 0.035526557 2.10E-11 10.67880803 -0.202851971 KRPES(ph)GSIR ddPTM_HeLa_A486_30min_R1 1 KRPESGSIR 9 2 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 KRPES(0.5)GS(0.5)IR 66.663 0.012874 162020000 305120 220910 147010 93358 173380 271660 295520 289910 211110 316010 TRUE FALSE FALSE 283732.6636 203404.2871 203936.2091 217342.1421 151633.0637 238145.3512 221577.7703 223903.8217 229409.1848 236879.0391 1.19779557 0.858684195 0.860929738 0.917523741 0.640128668 1.005345818 0.935404716 0.945224291 0.968465533 1 17.85379102 KRPES(ph)PPSILTPPVVPTADK ddPTM_HeLa_A486_30min_R1 1 KRPESPPSILTPPVVPTADK 20 2 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 KRPES(0.468)PPS(0.468)ILT(0.063)PPVVPTADK 87.49 0.00031848 127530000 179930 197080 103990 55160 174080 196230 217420 186710 156990 215710 TRUE FALSE FALSE 167317.8362 181462.663 144257.7129 128415.2676 152245.2632 172021.1377 163019.2164 144200.2089 170598.0196 161694.812 1.034775539 1.122254084 0.89216043 0.79418298 0.941559357 1.063863062 1.008190766 0.891804796 1.055061801 1 17.30291386 -8.556903358 14.8184571 1 0.974281586 0.003260675 0.093972364 19301767.07 0.205093817 0.097826686 0.024456671 2.77E-09 8.556903358 -0.025718414 KRPESGS(ph)IR ddPTM_HeLa_A485_30min_R1 1 KRPESGSIR 9 2 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 KRPES(0.068)GS(0.932)IR 99.539 0.0014198 192880000 400960 377190 273680 369280 355180 386560 537230 590940 442360 541690 TRUE FALSE FALSE 490152.1687 421299.0894 374925.6208 389452.8313 319817.0321 406799.6839 422446.4217 446011.0384 531137.5944 406656.6521 1.2053219 1.03600688 0.921970952 0.957694481 0.786454692 1.000351726 1.038828259 1.096775464 1.306108216 1 18.63345169 -7.190548575 2.347738011 1.159400239 0.975843577 0.233813584 0.120429965 0.422671342 4.475062324 0.078370115 0.036012813 6.45E-08 7.190548575 -0.183556662 KRPESGS(ph)IR ddPTM_HeLa_A486_30min_R1 1 KRPESGSIR 9 2 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 KRPESGS(1)IR 130.56 0.0001699 149760000 435140 304990 219940 120330 243070 421950 402470 388550 337980 437440 TRUE FALSE FALSE 404638.9331 280821.4816 305106.6582 280134.3211 212581.8941 369894.0991 301767.7491 300085.647 367276.3785 327902.1767 1.234023321 0.856418473 0.930480734 0.854322847 0.648308883 1.128062347 0.920298097 0.915168206 1.120079111 1 18.32290595 KRPLDVTDSACSSAPGS(ph)GPS(ph)SPNNSSGSVSAENGIAPAVPSIPAETSLAHR ddPTM_HeLa_A486_30min_R1 1 KRPLDVTDSACSSAPGSGPSSPNNSSGSVSAENGIAPAVPSIPAETSLAHR 51 2 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 2 0 KRPLDVT(0.014)DS(0.044)ACS(0.05)S(0.051)APGS(0.604)GPS(0.406)S(0.394)PNNS(0.143)S(0.138)GS(0.059)VS(0.097)AENGIAPAVPSIPAETSLAHR 67.174 0.00021117 178160000 41114 50104 34552 4843.9 56543 35763 46057 48358 48463 26823 TRUE FALSE FALSE 38232.12091 46133.57656 47931.45973 11276.844 49450.8497 31350.92467 34533.05146 37347.93905 52663.81186 20106.34621 1.901495205 2.294478374 2.383897066 0.560859933 2.459464747 1.559255189 1.717519986 1.857519942 2.619263157 1 14.29536331 KRPLRAPS(ph)PEPAAPR ddPTM_HeLa_A485_30min_R1 1 KRPLRAPSPEPAAPR 15 3 P20749 P20749 BCL3 B-cell lymphoma 3 protein 1 0 KRPLRAPS(1)PEPAAPR 129.11 0.00012007 664350000 234710 617020 383470 107340 464820 830010 892740 1662500 318420 255990 TRUE FALSE FALSE 286920.4298 689175.1216 525331.5105 113203.7124 418540.8887 873468.0402 701998.806 1254769.268 382323.9733 192176.4041 1.493005507 3.586158898 2.733590072 0.589061456 2.17789947 4.545136767 3.652887612 6.529257709 1.989442851 1 17.55207168 -6.245750056 22.72421171 3.895769868 2.147108164 0.153141441 1.57183428 373.2168625 540561.2995 0.504011539 0.501748943 5.68E-07 6.245750056 -1.748661705 KRPQS(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 6 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR ;;;;; 96.745 0.0025785 5534610000 8517320 9176490 4640470 10416980 6488170 9415930 10928200 14231630 8147720 13051730 TRUE FALSE FALSE 10411968.45 10249600.68 6357172.959 10986033.24 5842185.013 9908933.535 8593300.795 10741300.43 9782892.669 9798173.91 1.062643769 1.046072541 0.648812015 1.121232726 0.596252431 1.011304109 0.87703085 1.096255336 0.998440399 1 23.22408147 -7.252191039 24.45719051 1.035510902 0.90437381 0.103632503 0.164594405 1041.782326 2754998.675 0.075636097 0.042871383 5.60E-08 7.252191039 -0.131137092 KRPQS(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 3 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR;KRPQS(1)PS(1)PR ;; 81.565 0.0063199 2175590000 4284190 1993947 2179686 1476297 2023466 4503250 3411401 2899369 3709180 4555480 TRUE FALSE FALSE 3983890.405 1835939.378 3023718.793 3436894.024 1769664.026 3947684.801 2557832.388 2239245.971 4030694.709 3414758.157 1.166668391 0.537648435 0.885485488 1.006482411 0.518239929 1.156065706 0.749052281 0.655755362 1.180374868 1 21.70335198 -7.772945219 24.9976668 1.090187494 0.8293056 0.175776349 0.221311399 402.1872403 873766.3281 0.192970076 0.051558518 1.69E-08 7.772945219 -0.260881894 KRPQS(ph)PSPR ddPTM_HeLa_A485_30min_R1 4 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 KRPQS(1)PSPR;KRPQS(0.5)PS(0.5)PR;KRPQS(0.905)PS(0.095)PR;KRPQS(0.999)PS(0.001)PR ;;; 111.63 0.00061103 2099180000 1800382 1876867 969507 1759222 1055866 2013966 1769338 2714192 1664067 2182509 TRUE FALSE FALSE 2200870.765 2096350.269 1328167.984 1855323.843 950740.2737 2119414.146 1391304.482 2048532.156 1998029.983 1638449.672 1.343264185 1.279471872 0.810624828 1.132365476 0.580268219 1.293548518 0.84915912 1.250286897 1.219463751 1 20.64389993 -4.617320346 7.94126994 1.018675226 1.32717738 0.238746476 0.211515589 0.300482207 21.57803519 0.052270499 0.139500997 2.41E-05 4.617320346 0.308502154 KRPQS(ph)PSPR ddPTM_HeLa_A486_30min_R1 4 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 KRPQS(0.995)PS(0.005)PR;KRPQS(0.968)PS(0.032)PR;KRPQS(0.995)PS(0.005)PR;KRPQS(0.798)PS(0.202)PR ;;; 91.937 0.0014507 630681000 432139 261713 371516 179722 322718 558556 408149 370466 447464 484560 TRUE FALSE FALSE 401848.2877 240973.9087 515376.9447 418401.8986 282239.6992 489647.0397 306025.8032 286118.979 486250.5398 363223.022 1.106340356 0.663432366 1.418899446 1.15191459 0.777042429 1.348061687 0.842528652 0.787722588 1.338710683 1 18.47049612 KRPQSPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 KRPQS(0.387)PS(0.613)PR 50.95 0.022397 302820000 68762 67911 32417 70392 35724 79789 74954 93917 66509 83624 TRUE FALSE FALSE 84057.86967 75852.6007 44409.39728 74237.33672 32167.19313 83966.62866 58939.46558 70883.70849 79856.74624 62778.07579 1.338968559 1.20826578 0.70740297 1.182536033 0.512395334 1.337515169 0.938854287 1.12911566 1.272048326 1 15.93797319 -9.345539342 13.58197416 0.999941948 1.055805635 0.00385618 0.261024567 0 0 0.244863393 0.059388096 4.51E-10 9.345539342 0.055863688 KRPQSPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KRPQSPSPR 9 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 KRPQS(0.201)PS(0.799)PR 85.813 0.0019195 248270000 127730 48380 80293 39253 56418 155690 103710 60019 120410 110490 TRUE FALSE FALSE 118776.7866 44546.1926 111384.5999 91382.96774 49341.52836 136482.5507 77760.66107 46353.98391 130847.2357 82822.58483 1.43411108 0.537850789 1.344857808 1.103358075 0.595749679 1.6478905 0.938882326 0.559678064 1.579849699 1 16.33773661 KRPS(ph)EGNYQK ddPTM_HeLa_A485_30min_R1 2 KRPSEGNYQK 10 2 E5RH92;E5RGC1;Q9UKB1-2;Q9UKB1-3;Q9UKB1 E5RH92 FBXW11 F-box/WD repeat-containing protein 11 1 0 KRPS(1)EGNYQK;KRPS(1)EGNYQK ; 91.28 0.0021625 1132850000 810530 706060 457060 965150 920880 858340 1205130 1346710 688770 1160930 TRUE FALSE FALSE 990829.6022 788627.5751 626145.5139 1017873.701 829193.9538 903281.3552 947644.1305 1016427.261 826999.8212 871531.5163 1.136883272 0.904875567 0.718442767 1.167913818 0.951421651 1.036429938 1.087332027 1.166254165 0.948904091 1 19.73319331 -5.287703195 24.99329546 1.054841856 0.918547916 0.205219332 0.118075457 1112.536231 1058714.699 0.033249898 0.049333547 5.16E-06 5.287703195 -0.13629394 KRPS(ph)EGNYQK ddPTM_HeLa_A486_30min_R1 1 KRPSEGNYQK 10 2 E5RH92;E5RGC1;Q9UKB1-2;Q9UKB1-3;Q9UKB1 E5RH92 FBXW11 F-box/WD repeat-containing protein 11 1 0 KRPS(1)EGNYQK 186.16 4.65E-10 476420000 468030 488340 259090 251730 438590 551040 656700 664730 401240 639760 TRUE FALSE FALSE 435223.5139 449642.1599 359416.5867 586040.1617 383577.9525 483058.2874 492386.7141 513385.49 436019.8063 479559.9319 0.907547702 0.937614112 0.749471678 1.222037378 0.799854047 1.007294929 1.026746985 1.070534579 0.909208166 1 18.8713516 -5.225947133 24.99991807 1.000477621 0.872151518 0.248543961 0.111311309 913.2323509 643258.7371 0.028813083 0.049903877 5.94E-06 5.225947133 -0.128326102 KRPS(ph)LPS(ph)SPSPGLPK ddPTM_HeLa_A486_30min_R1 1 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 2 0 KRPS(1)LPS(0.683)S(0.318)PSPGLPK 157.51 8.66E-09 570410000 534750 521490 228870 287520 409450 636310 777150 723200 381340 839200 TRUE FALSE FALSE 497266.7865 480165.2332 317494.5934 669361.0905 358092.963 557808.5417 582698.8501 558543.1473 414394.8582 629058.8577 0.790493259 0.763307324 0.504713652 1.064067507 0.569251921 0.886735056 0.926302592 0.887902842 0.658753713 1 19.26283548 KRPS(ph)LPSS(ph)PSPGLPK ddPTM_HeLa_A485_30min_R1 4 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 2 0 KRPS(0.992)LPS(0.356)S(0.652)PSPGLPK;KRPS(1)LPS(0.311)S(0.669)PS(0.021)PGLPK;KRPS(0.993)LPS(0.172)S(0.834)PSPGLPK;KRPS(0.998)LPS(0.41)S(0.531)PS(0.06)PGLPK ;;; 181.4 3.46E-17 5035610000 6087810 3805450 2651930 8656900 5193010 4954400 7651700 5659860 4082610 11057400 TRUE FALSE FALSE 7442022.332 4250464.274 3632989.263 9129804.527 4675975.691 5213804.723 6016851.786 4271770.461 4901952.379 8300993.676 0.896521865 0.512042828 0.437657153 1.099844776 0.563303126 0.628094048 0.724835125 0.514609531 0.590525974 1 22.98485261 -11.12069929 2.368690193 1.66013632 0.658314408 0.220085842 0.190102249 12674127.69 3355710.646 45024666 0.046493523 7.57E-12 11.12069929 -1.001821911 KRPS(ph)LPSS(ph)PSPGLPK ddPTM_HeLa_A486_30min_R1 3 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 2 0 KRPS(0.932)LPS(0.257)S(0.811)PS(0.001)PGLPK;KRPS(0.989)LPS(0.175)S(0.835)PSPGLPK;KRPS(0.999)LPS(0.422)S(0.578)PS(0.001)PGLPK ;; 152.06 2.83E-08 3260150000 3628590 3361320 1388740 1867450 2691870 4214500 5182100 4693700 2499380 5242800 TRUE FALSE FALSE 3374244.579 3094956.761 1926497.32 4347517.976 2354230.564 3694557.84 3885483.769 3625046.973 2716028.271 3929968.755 0.858593233 0.787527066 0.490206778 1.106247466 0.599045619 0.940098528 0.988680575 0.922411143 0.691106836 1 21.90608641 KRPS(ph)LPSSPSPGLPK ddPTM_HeLa_A485_30min_R1 1 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 KRPS(0.844)LPS(0.063)S(0.089)PS(0.003)PGLPK 77.391 0.0042339 1003100000 320030 233440 175500 401370 305020 303890 469870 315250 304450 640260 TRUE FALSE FALSE 391219.5694 260738.7773 240424.7532 423295.8268 274651.1378 319801.2105 369478.436 237934.4432 365550.3224 480654.9651 0.813930153 0.542465586 0.500202371 0.88066463 0.571410175 0.665344652 0.768697845 0.495021295 0.760525427 1 18.87464211 -8.014408807 24.14794124 1.000000009 0.653048179 0.409865064 0.125875302 483.203535 809809.3714 0.116353693 0.030042394 9.67E-09 8.014408807 -0.34695183 KRPS(ph)LPSSPSPGLPK ddPTM_HeLa_A486_30min_R1 2 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 KRPS(0.968)LPS(0.031)SPSPGLPK;KRPS(0.944)LPS(0.051)S(0.004)PS(0.001)PGLPK ; 136.68 5.70E-06 1396410000 945540 906910 476680 459710 680270 1042540 1291880 1199840 681300 1183610 TRUE FALSE FALSE 879262.5288 835043.1487 661263.2619 1070228.112 594944.1933 913922.0146 968637.9599 926662.6243 740355.6326 887226.352 0.99102391 0.941183889 0.745315173 1.206262765 0.670566414 1.030088897 1.091759682 1.044448942 0.834460824 1 19.75894269 KRPYEENR ddPTM_HeLa_A485_30min_R1 1 KRPYEENR 8 2 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8;M0QZV6;M0R203 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 0 96.331 0.0023453 35517000 64738 74785 46507 34648 40397 108580 59885 94860 68194 53031 FALSE FALSE TRUE 79138.74476 83530.45521 63711.87462 36540.73251 36374.93284 114265.0809 47090.08053 71595.43627 81879.91029 39811.34766 1.987843904 2.098156935 1.600344584 0.917847163 0.91368253 2.870163599 1.182830607 1.798367563 2.056697778 1 15.28089209 KRQLS(ph)PQSK ddPTM_HeLa_A485_30min_R1 2 KRQLSPQSK 9 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 KRQLS(1)PQSK;KRQLS(0.999)PQS(0.001)K ; 80.014 0.011663 716990000 1278500 2063630 826410 1405550 1042350 2872100 2590800 4748100 1560780 1688690 TRUE FALSE FALSE 1562897.914 2304953.577 1132133.449 1482331.637 938569.9741 3022478.715 2037254.415 3583621.03 1874014.23 1267730.661 1.232831202 1.818172935 0.893039416 1.169279629 0.740354401 2.384164719 1.607008868 2.826799998 1.4782432 1 20.27381684 -6.262542639 24.99995703 1.957653696 1.191195822 0.281586943 0.538022631 118.0996843 2676128.142 0.176276602 0.164219496 5.46E-07 6.262542639 -0.766457874 KRQLS(ph)PQSK ddPTM_HeLa_A486_30min_R1 1 KRQLSPQSK 9 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 KRQLS(1)PQSK 95.401 0.0011978 241160000 478520 180320 168280 210190 170300 444000 345300 245060 291400 594700 TRUE FALSE FALSE 444978.2191 166030.7865 233442.5227 489332.9424 148939.386 389223.7943 258902.2878 189265.1876 316658.7866 445783.2492 0.998194122 0.372447343 0.523668225 1.09769253 0.334107184 0.873123418 0.580780656 0.424567742 0.710342498 1 18.76598288 -8.026691474 23.39640745 1.000000012 0.641577295 0.148579305 0.249096568 2191.01965 1920537.546 0.227955533 0.058857865 9.40E-09 8.026691474 -0.358422717 KRQPS(ph)MSETMPLYTLCK ddPTM_HeLa_A485_30min_R1 1 KRQPSMSETMPLYTLCK 17 2 K7EJD2;A0A0A0MR03;Q9Y5B0 K7EJD2 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 KRQPS(0.333)MS(0.333)ET(0.333)MPLYTLCK 51.193 0.0202 298590000 326880 261070 182690 510480 335520 303700 414170 343450 212390 619100 TRUE FALSE FALSE 399593.3283 291599.8655 250274.6334 538366.2298 302114.4507 319601.2624 325679.196 259218.349 255014.7248 464769.7637 0.859766189 0.627407134 0.538491642 1.158350374 0.650030347 0.687655023 0.700732323 0.557734967 0.548690437 1 18.82615669 KRQS(ph)PEPSPVTLGR ddPTM_HeLa_A485_30min_R1 4 KRQSPEPSPVTLGR 14 2 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 KRQS(0.996)PEPS(0.001)PVT(0.003)LGR;KRQS(0.996)PEPS(0.004)PVTLGR;KRQS(1)PEPSPVTLGR;KRQS(0.998)PEPS(0.002)PVTLGR ;;; 182.7 9.96E-18 2914430000 1871810 2271020 1854800 1685010 2485450 2432960 2988490 3467960 2110010 2781960 TRUE FALSE FALSE 2288187.677 2536596.034 2540967.705 1777057.83 2237989.871 2560346.024 2349974.698 2617437.372 2533469.653 2088468.57 1.095629453 1.21457228 1.216665523 0.850890387 1.071593752 1.225944245 1.125214299 1.25328071 1.213075307 1 20.994014 -6.248159674 23.72749731 1.17693992 1.090565683 0.087070131 0.115163804 969.4444336 1732152.739 0.039749396 0.039495818 5.65E-07 6.248159674 -0.086374237 KRQS(ph)PEPSPVTLGR ddPTM_HeLa_A486_30min_R1 4 KRQSPEPSPVTLGR 14 2 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 KRQS(1)PEPSPVTLGR;KRQS(0.891)PEPS(0.107)PVT(0.002)LGR;KRQS(1)PEPSPVTLGR;KRQS(0.995)PEPS(0.005)PVT(0.001)LGR ;;; 180.14 1.18E-17 2447050000 2228970 2079200 1548220 799060 2280090 2023710 2491220 2414240 1804640 2580700 TRUE FALSE FALSE 2072730.713 1914436.62 2147732.247 1860252.062 1994099.851 1774045.236 1867890.407 1864570.254 1961067.648 1934475.922 1.071468861 0.989640966 1.110239844 0.961631024 1.030821748 0.917067623 0.965579558 0.963863252 1.013746217 1 20.88351134 -5.286038853 24.99372183 0.976477514 1.050369008 0.431845038 0.040793403 704.2211547 715506.5247 0.011093187 0.016462784 5.18E-06 5.286038853 0.073891494 KRQS(ph)VSGLHR ddPTM_HeLa_A485_30min_R1 6 KRQSVSGLHR 10 2 Q8N1G4;J3KRP5 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KRQS(0.997)VS(0.003)GLHR;KRQS(1)VSGLHR;KRQS(0.999)VS(0.001)GLHR;KRQS(1)VSGLHR;KRQS(0.999)VS(0.001)GLHR;KRQS(0.999)VS(0.001)GLHR ;;;;; 166.38 1.81E-07 6905570000 1773525 2391390 1833976 1376906 2705346 2311349 2758874 3426541 1897041 1909727 TRUE FALSE FALSE 2168039.518 2671042.258 2512440.041 1452122.888 2435992.253 2432367.66 2169418.032 2586176.447 2277759.728 1433667.205 1.51223346 1.86308388 1.752456938 1.01287306 1.699133694 1.696605496 1.51319499 1.803888963 1.588764617 1 20.45127874 -8.068005729 21.49938407 0.999999998 1.609075369 0.391051568 0.226457845 8468.896509 2677361.092 0.222286065 0.057394015 8.55E-09 8.068005729 0.609075371 KRQS(ph)VSGLHR ddPTM_HeLa_A486_30min_R1 6 KRQSVSGLHR 10 2 Q8N1G4;J3KRP5 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KRQS(0.95)VS(0.05)GLHR;KRQS(0.999)VS(0.001)GLHR;KRQS(1)VSGLHR;KRQS(1)VSGLHR;KRQS(0.999)VS(0.001)GLHR;KRQS(0.999)VS(0.001)GLHR ;;;;; 162.93 2.33E-07 4334710000 2685725 2575332 1978597 460844.2 3016473 2296190 2865487 2817386 2000331 2244589 TRUE FALSE FALSE 2497469.547 2371253.313 2744762.747 1072868.587 2638118.829 2012909.424 2148511.845 2175928.711 2173721.302 1682529.305 1.484354263 1.409338492 1.631331317 0.637652244 1.56794822 1.196359207 1.276953595 1.293248626 1.291936667 1 20.6822002 -1.000000004 0.033857355 0.176855148 2.963854726 0.145153814 0.25541798 2321.16159 6.024554926 149.1937435 404.715656 0.099999999 1.000000004 2.786999578 KRRMQEEK ddPTM_HeLa_A485_30min_R1 1 KRRMQEEK 8 3 Q5R3F8 Q5R3F8 ELFN2 Protein phosphatase 1 regulatory subunit 29 0 0 61.962 0.014317 709620000 450150 379910 251820 561740 422160 458000 527110 480110 346040 750690 FALSE FALSE TRUE 550284.3145 424337.1697 344978.6971 592426.4338 380128.2681 481980.1718 414488.6424 362362.2697 415487.0539 563556.7984 0.97644872 0.75296256 0.612145392 1.051227552 0.674516338 0.855246841 0.7354869 0.642991568 0.737258525 1 19.1042015 KRRPPS(ph)PEPSTK ddPTM_HeLa_A485_30min_R1 4 KRRPPSPEPSTK 12 3 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 KRRPPS(0.998)PEPS(0.002)TK;KRRPPS(0.999)PEPSTK;KRRPPS(0.996)PEPS(0.004)TK;KRRPPS(0.995)PEPS(0.004)T(0.001)K ;;; 122.33 0.00038218 10933300000 3176260 8154990 4226340 4472060 6780520 10776690 13465820 18039380 5681060 6540070 TRUE FALSE FALSE 3882808.079 9108645.142 5789839.039 4716357.314 6105427.621 11340940.82 10588737.55 13615193.77 6821196.632 4909750.91 0.790836063 1.855215327 1.179253112 0.960610304 1.243531033 2.309881098 2.156675103 2.77309257 1.389316232 1 22.2272184 -6.248434049 23.21726058 2.051041393 1.226856288 0.302583778 0.529193959 322.5601374 575837.3054 0.16811131 0.166895293 5.64E-07 6.248434049 -0.824185104 KRRPPS(ph)PEPSTK ddPTM_HeLa_A486_30min_R1 3 KRRPPSPEPSTK 12 3 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 KRRPPS(1)PEPSTK;KRRPPS(0.998)PEPS(0.002)TK;KRRPPS(1)PEPSTK ;; 125.97 0.00023484 7688610000 3284030 2225600 1042030 1085150 2213960 2038390 2955820 2840500 1471860 4341570 TRUE FALSE FALSE 3053836.456 2049235.351 1445531.923 2526284.04 1936264.492 1786914.167 2216242.573 2193780.158 1599442.01 3254412.613 0.938367939 0.629679022 0.444175983 0.776264211 0.594965889 0.549074251 0.680996185 0.674094044 0.491468723 1 21.63396575 -10.32135039 4.743188319 1.000218741 0.63783848 0.388245218 0.134673563 0.000303337 4.34E-05 0.126969588 0.030776239 4.77E-11 10.32135039 -0.362380261 KRRT(ph)ES(ph)R ddPTM_HeLa_A485_30min_R1 1 KRRTESR 7 3 Q6IQ21 Q6IQ21 ZNF770 Zinc finger protein 770 2 0 KRRT(1)ES(1)R 66.299 0.013774 606920000 908940 743740 721110 1216600 878100 751960 1013300 677830 968600 1719900 TRUE FALSE FALSE 1111130.567 830713.9233 987878.5969 1283059.777 790673.2808 791331.4628 796800.1771 511591.1297 1162989.135 1291160.582 0.860567293 0.643385443 0.765109011 0.993725951 0.612374085 0.612883845 0.617119348 0.396225796 0.900731599 1 20.30023701 -4.244636198 22.7393354 0.706940734 0.860567712 0.036005043 0.183168892 3077.892116 4164996.864 0.045532488 1.069046497 5.69E-05 4.244636198 0.153626978 KRS(ph)DSSGGYNLSDIIQS(ph)PSSTGLLK ddPTM_HeLa_A486_30min_R1 1 KRSDSSGGYNLSDIIQSPSSTGLLK 25 2 E9PDR5;Q9P2D0-2;Q9P2D0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 2 0 KRS(0.204)DS(0.204)S(0.204)GGY(0.189)NLS(0.204)DIIQS(0.694)PS(0.087)S(0.1)T(0.116)GLLK 58.627 0.016768 77597000 82570 65674 40858 34118 62853 66488 91285 85052 45701 89839 TRUE FALSE FALSE 76782.26939 60469.75306 56679.31182 79428.42823 54969.39066 58285.38656 68444.52749 65687.51627 49662.39948 67342.72965 1.140171624 0.897940333 0.841654505 1.179465529 0.81626318 0.865503773 1.016361051 0.975421053 0.737457477 1 16.03923458 KRS(ph)EGFSMDR ddPTM_HeLa_A485_30min_R1 7 KRSEGFSMDR 10 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 KRS(0.977)EGFS(0.023)MDR;KRS(0.982)EGFS(0.018)MDR;KRS(0.5)EGFS(0.5)MDR;KRS(0.888)EGFS(0.112)MDR;KRS(0.898)EGFS(0.102)MDR;KRS(0.895)EGFS(0.105)MDR;KRS(0.89)EGFS(0.11)MDR ;;;;;; 149.32 2.88E-06 13483500000 13273280 14226970 11805310 14014490 17752870 14026760 18165210 19044640 11305070 16832190 TRUE FALSE FALSE 16225875.34 15890690.38 16172585.43 14780066.1 15985331.93 14761179.46 14284064.49 14373912.18 13573893.85 12636234.81 1.284075169 1.25754947 1.279857938 1.169657444 1.265039165 1.168162802 1.130405117 1.137515439 1.07420399 1 23.59106331 -7.067221885 0.34577524 0.985651185 1.303460075 0.889805387 0.030067358 0.402658288 0.138797036 0.039756229 0.044213499 8.57E-08 7.067221885 0.317808891 KRS(ph)EGFSMDR ddPTM_HeLa_A486_30min_R1 7 KRSEGFSMDR 10 2 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 KRS(0.992)EGFS(0.008)MDR;KRS(0.963)EGFS(0.037)MDR;KRS(0.667)EGFS(0.333)MDR;KRS(0.566)EGFS(0.434)MDR;KRS(0.942)EGFS(0.058)MDR;KRS(0.793)EGFS(0.207)MDR;KRS(0.855)EGFS(0.145)MDR ;;;;;; 139.64 1.31E-05 13401820000 17692310 16969580 11877950 6906230 19994210 17918460 21125700 20776820 13216860 20328200 TRUE FALSE FALSE 16452170.43 15624848.68 16477410.34 16078052.46 17486349.74 15707862.59 15839826.42 16046391.64 14362508.07 15237886.41 1.079688481 1.025394747 1.081344873 1.055136653 1.147557429 1.03084261 1.039502854 1.053058883 0.942552509 1 23.86115947 -7.680994516 6.133706759 0.972031156 1.06457695 0.525318083 0.035361693 0.151347452 8.793651281 0.025101093 0.009056996 2.08E-08 7.680994516 0.092545794 KRS(ph)ESPPAELPSLR ddPTM_HeLa_A486_30min_R1 1 KRSESPPAELPSLR 14 2 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 KRS(0.585)ES(0.415)PPAELPSLR 103.85 0.00019028 216650000 98860 87710 69167 38881 119540 85643 112600 106040 68087 111660 TRUE FALSE FALSE 91930.42451 80759.54017 95950.31476 90516.93294 104546.1785 75077.23741 84426.28904 81897.00684 73988.83598 83699.60922 1.098337559 0.964873563 1.146365146 1.081449887 1.249064118 0.896984324 1.008681998 0.978463431 0.883980662 1 16.35293327 -6.286516187 24.99928114 0.95571729 1.100719996 0.51079585 0.075365814 702.3806166 700206.6953 0.026719242 0.023573346 5.17E-07 6.286516187 0.145002706 KRS(ph)FVPEEEKHEER ddPTM_HeLa_A485_30min_R1 1 KRSFVPEEEKHEER 14 3 A0A0U1RRH6;O94880;B4DG57;O94880-2 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 KRS(1)FVPEEEKHEER 142.31 1.01E-07 519320000 621290 479900 350160 795810 587040 497190 725260 626830 413190 872080 TRUE FALSE FALSE 759493.8171 536020.1304 479698.7554 839283.0852 528592.2364 523222.0996 570302.2762 473098.9597 496113.443 654686.5054 1.160087784 0.818743209 0.732715202 1.281961791 0.807397483 0.799194875 0.871107425 0.722634354 0.757787794 1 19.32044472 -5.902811383 22.52181758 0.81326917 0.976336026 0.206706494 0.161589269 11.91099683 2744.22271 0.049869398 0.056546622 1.25E-06 5.902811383 0.163066855 KRS(ph)FVPEEEKHEER ddPTM_HeLa_A486_30min_R1 3 KRSFVPEEEKHEER 14 3 A0A0U1RRH6;O94880;B4DG57;O94880-2 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 KRS(1)FVPEEEKHEER;KRS(1)FVPEEEKHEER;KRS(1)FVPEEEKHEER ;; 146.13 7.90E-08 777690000 1117150 813970 508848 518985 865270 963710 1194950 1083370 661342 1432260 TRUE FALSE FALSE 1038843.554 749468.0528 705887.573 1208223.308 756739.7683 844817.2585 895960.8711 836710.3008 718667.657 1073612.774 0.967614749 0.698080417 0.657488054 1.125380899 0.704853544 0.786891959 0.834528885 0.779340859 0.669391865 1 20.03404231 KRS(ph)GNSDSIER ddPTM_HeLa_A485_30min_R1 7 KRSGNSDSIER 11 2 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 1 0 KRS(0.978)GNS(0.022)DSIER;KRS(0.947)GNS(0.053)DSIER;KRS(0.821)GNS(0.176)DS(0.003)IER;KRS(0.991)GNS(0.009)DSIER;KRS(0.997)GNS(0.003)DSIER;KRS(0.999)GNS(0.001)DSIER;KRS(0.555)GNS(0.425)DS(0.02)IER ;;;;;; 160.04 5.55E-08 5143513000 2182598 2663679 1733942 2774479 2525864 3365940 4311180 6471710 2862152 3976650 TRUE FALSE FALSE 2668109.395 2975173.088 2375399.301 2926041.762 2274380.111 3542175.414 3390061.174 4884512.975 3436559.653 2985344.34 0.893735895 0.996592939 0.795686873 0.980135431 0.761848501 1.186521557 1.13556789 1.636164013 1.151143474 1 21.50946592 -6.471885981 2.873165825 1.281874474 0.892517977 0.476211975 0.171571309 0.211240549 3.464838084 0.065643975 0.053671836 3.37E-07 6.471885981 -0.389356497 KRS(ph)GNSDSIER ddPTM_HeLa_A486_30min_R1 5 KRSGNSDSIER 11 2 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 1 0 KRS(1)GNSDSIER;KRS(1)GNSDSIER;KRS(0.928)GNS(0.072)DSIER;KRS(0.981)GNS(0.018)DS(0.001)IER;KRS(0.571)GNS(0.422)DS(0.007)IER ;;;; 153.94 3.04E-07 1833893000 1840951 1342568 1617532 1068541.9 1657697 2741398 2478718 1988264 2056679 2568062 TRUE FALSE FALSE 1711909.842 1236178.022 2243883.709 2487619.544 1449773.185 2403192.187 1858516.539 1535579.691 2234953.592 1925002.56 0.889302631 0.642169547 1.165652325 1.292268175 0.753127926 1.248409866 0.965461853 0.797702675 1.161013309 1 20.87642893 -4.761571224 25 1.043138534 0.765736078 0.287159634 0.177730985 4.17964998 793251.6922 0.04542376 0.105361968 1.73E-05 4.761571224 -0.277402456 KRS(ph)ISES(ph)SR ddPTM_HeLa_A486_30min_R1 1 KRSISESSR 9 2 Q9H307 Q9H307 PNN Pinin 2 0 KRS(0.947)IS(0.074)ES(0.973)S(0.007)R 83.53 0.002965 0 1483900 1058900 813010 591290 1348700 1394700 1568900 1574600 1061700 1911500 TRUE FALSE FALSE 1379886.273 974988.9076 1127829.245 1376553.002 1179533.47 1222636.094 1176344.626 1216097.953 1153729.011 1432847.958 0.96303747 0.680455244 0.78712416 0.960711145 0.823209094 0.853290879 0.820983566 0.84872784 0.805199885 1 20.4504541 -10.19077578 3.783155117 1.000141463 0.835374111 0.281355005 0.077524261 37759036.73 64690323.72 63755.55223 0.018945429 6.45E-11 10.19077578 -0.164767352 KRS(ph)ISESSR ddPTM_HeLa_A486_30min_R1 1 KRSISESSR 9 2 Q9H307 Q9H307 PNN Pinin 1 0 KRS(1)ISESSR 128.28 0.00011819 18330000 8580.7 4773.8 7945 5254.5 6995.2 5573.5 9514.1 9396.9 5765.3 8368 TRUE FALSE FALSE 7979.237241 4395.506702 11021.51677 12232.74155 6117.796788 4885.898237 7133.57155 7257.431003 6265.040846 6272.598333 1.272078462 0.700747357 1.757089517 1.95018729 0.975320986 0.778927324 1.137259421 1.157005537 0.998795158 1 12.61484747 KRS(ph)PS(ph)PS(ph)PTPEAK ddPTM_HeLa_A485_30min_R1 2 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 3 0 KRS(1)PS(0.953)PS(0.617)PT(0.43)PEAK;KRS(0.999)PS(0.995)PS(0.584)PT(0.422)PEAK ; 94.882 0.0012695 808620000 1025350 781760 551720 1729750 1146750 1079320 1799870 1691000 833780 2312100 TRUE FALSE FALSE 1253435.57 873180.0316 755824.187 1824241.863 1032575.544 1135831.526 1415313.071 1276279.599 1001111.998 1735736.021 0.722134907 0.503060385 0.435448811 1.050990381 0.594892041 0.654380339 0.815396497 0.735295911 0.576765122 1 20.72711612 -14 0.173780358 2.222951123 0.608837534 0.249028846 0.165459767 196.1858469 1.864911937 83.3845988 0.575132281 1.00E-14 14 -1.614113589 KRS(ph)PS(ph)PS(ph)PTPEAK ddPTM_HeLa_A486_30min_R1 1 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 3 0 KRS(0.996)PS(0.945)PS(0.61)PT(0.449)PEAK 77.468 0.0070057 313580000 634400 535830 258880 422940 518420 726610 952330 843920 440660 1203200 TRUE FALSE FALSE 589931.836 493368.8793 359125.269 984625.6942 453394.9295 636968.2458 714046.9613 651777.8386 478856.7636 901910.8885 0.654091046 0.547026193 0.398182652 1.091710619 0.502704796 0.706242994 0.791704558 0.722663233 0.530935783 1 19.78262537 -14 0.218233601 2.625180294 0.623255712 0.226892178 0.183640308 235.5948704 2.356739794 169.0673526 0.356717972 1.00E-14 14 -2.001924582 KRS(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A485_30min_R1 6 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 KRS(0.989)PS(0.94)PS(0.07)PT(0.001)PEAK;KRS(0.964)PS(0.987)PS(0.05)PTPEAK;KRS(0.982)PS(0.93)PS(0.088)PTPEAK;KRS(1)PS(0.998)PS(0.003)PTPEAK;KRS(0.962)PS(0.781)PS(0.258)PTPEAK;KRS(0.988)PS(0.911)PS(0.101)PTPEAK ;;;;; 173.58 1.71E-12 15974660000 7833210 6908160 4896420 12153310 8796730 9034070 14446280 13977780 7073030 16690180 TRUE FALSE FALSE 9575680.54 7716009.219 6707809.515 12817214.55 7920896.674 9507079.936 11359714.26 10549707.54 8492522.243 12529625.29 0.764243169 0.615821227 0.535355955 1.022952743 0.632173468 0.758768097 0.906628411 0.841981089 0.677795389 1 23.57883993 -13.99999997 0.044271908 2.06165137 0.172971987 0.256034905 0.135532981 956.7147618 3.144090045 128.3777453 33.94202789 1.00E-14 13.99999997 -1.888679383 KRS(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A486_30min_R1 5 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 KRS(1)PS(0.994)PS(0.006)PTPEAK;KRS(0.973)PS(0.917)PS(0.11)PTPEAK;KRS(0.997)PS(0.931)PS(0.072)PTPEAK;KRS(0.989)PS(0.7)PS(0.311)PTPEAK;KRS(0.983)PS(0.904)PS(0.113)PTPEAK ;;;; 182.18 2.65E-17 12265090000 4715830 4123250 2069370 2444440 3786520 5110840 6787410 5952170 3260480 7890760 TRUE FALSE FALSE 4385274.67 3796508.653 2870685.484 5690779.855 3311579.354 4480316.524 5089128.228 4596990.826 3543101.032 5914862.336 0.741399279 0.641859174 0.485334285 0.962115351 0.559874291 0.757467591 0.860396733 0.777193207 0.599016652 1 22.49591316 -14 0.180999608 2.149663803 0.654582072 0.282131594 0.136593484 176.0007178 1.696846813 73.1320263 0.415379047 1.00E-14 14 -1.495081731 KRS(ph)PSPS(ph)PTPEAK ddPTM_HeLa_A485_30min_R1 1 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 KRS(0.997)PS(0.428)PS(0.568)PT(0.008)PEAK 109.84 0.0082222 276730000 221490 187610 129620 366110 250960 272850 425430 424430 211920 524880 TRUE FALSE FALSE 270759.6864 209549.3575 177571.8319 386109.6623 225973.5412 287136.0041 334533.4051 320337.877 254450.4002 394037.0757 0.687142665 0.531801118 0.450647523 0.979881554 0.573482941 0.728703012 0.848989665 0.812963796 0.645752433 1 18.58797186 -9.125415534 0.056439452 1.74304632 2.31E-09 0.343337267 0.14197772 120.9735191 1.970050382 36.866253 23.86012191 7.49E-10 9.125415534 -1.743046318 KRS(ph)PSPS(ph)PTPEAK ddPTM_HeLa_A486_30min_R1 1 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 KRS(0.762)PS(0.241)PS(0.993)PT(0.004)PEAK 134.08 5.12E-05 7725100000 11123000 9310500 4072000 5652800 8693400 11981000 15489000 14589000 7647600 17744000 TRUE FALSE FALSE 10343335.14 8572702.072 5648787.452 13160004.08 7602992.709 10502906.03 11613488.37 11267403.18 8310500.126 13300786.91 0.777648361 0.644525932 0.424695734 0.989415451 0.571619767 0.789645463 0.873142954 0.84712305 0.624812666 1 23.66500827 -14 0.093172466 1.865470842 0.519905157 0.228095413 0.154942019 296.1854022 1.901696405 50.64626847 3.238273388 1.00E-14 14 -1.345565685 KRS(ph)SITEPEGPNGPNIQK ddPTM_HeLa_A486_30min_R1 1 KRSSITEPEGPNGPNIQK 18 2 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 KRS(0.333)S(0.333)IT(0.333)EPEGPNGPNIQK 146.78 1.98E-08 134990000 182840 155030 93200 78724 171500 166400 209630 213210 120260 212180 TRUE FALSE FALSE 170023.8602 142744.8582 129289.536 183273.4505 149988.8708 145871.2598 157178.3568 164666.7373 130684.2336 159048.7469 1.069004714 0.897491247 0.812892515 1.15230993 0.943037111 0.917148124 0.988240145 1.035322444 0.82166151 1 17.27910948 -4.24061894 23.00767879 0.954789359 1.069005051 0.118226727 0.095581748 3818.251388 4219172.232 0.023424985 0.848157062 5.75E-05 4.24061894 0.114215692 KRS(ph)SLS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 KRSSLSPGR 9 2 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 KRS(0.818)S(0.205)LS(0.977)PGR 95.659 0.0096702 4405700000 4469300 5578700 3911100 5198100 5740200 6010300 7590200 8395400 4965900 7489600 TRUE FALSE FALSE 5463480.366 6231080.437 5357978.644 5482059.041 5168685.533 6324990.014 5968491.764 6336414.987 5962510.58 5622580.556 0.971703351 1.108224306 0.952939418 0.975007648 0.919272829 1.124926526 1.061521788 1.126958507 1.060458009 1 22.422801 -6.272171729 24.99575212 1.081879673 0.989867444 0.377202418 0.05689387 767.9433592 1788542.967 0.019964601 0.017783202 5.34E-07 6.272171729 -0.092012229 KRS(ph)SLS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 KRSSLSPGR 9 2 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 KRS(0.756)S(0.25)LS(0.994)PGR;KRS(0.943)S(0.25)LS(0.807)PGR ; 102.45 0.0056018 1392190000 2901060 2330720 1827920 1180740 2516450 2847750 3189810 2796540 2208760 3447610 TRUE FALSE FALSE 2697710.675 2146025.259 2535739.577 2748822.391 2200813.376 2496423.559 2391685.8 2159828.89 2400217.095 2584306.016 1.043882055 0.830406788 0.981207164 1.063659789 0.851607109 0.965993788 0.9254654 0.835748118 0.928766594 1 21.30134548 -5.785059206 24.99983819 0.912497551 0.96922022 0.135835486 0.07379404 514.6869138 544755.4997 0.022775661 0.025839302 1.64E-06 5.785059206 0.05672267 KRS(ph)SSEDAESLAPR ddPTM_HeLa_A485_30min_R1 2 KRSSSEDAESLAPR 14 2 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 KRS(0.874)S(0.103)S(0.023)EDAESLAPR;KRS(0.91)S(0.044)S(0.044)EDAES(0.001)LAPR ; 164.01 4.81E-12 1951010000 705440 974200 656240 645560 990530 970830 1318810 1486090 680010 948210 TRUE FALSE FALSE 862362.6943 1088124.216 899010.4844 680825.3082 891909.3552 1021661.158 1037035.47 1121624.097 816481.7696 711838.6975 1.211458013 1.528610652 1.262941292 0.956431999 1.252965536 1.435242508 1.456840536 1.57567171 1.14700391 1 19.44119084 -6.180566553 8.392611617 1.367162745 1.243174868 0.015689178 0.201142574 0.99841799 95.62729085 0.067586884 0.067605129 6.60E-07 6.180566553 -0.123987878 KRS(ph)SSEDAESLAPR ddPTM_HeLa_A486_30min_R1 3 KRSSSEDAESLAPR 14 2 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 KRS(0.435)S(0.435)S(0.129)EDAESLAPR;KRS(0.855)S(0.132)S(0.013)EDAESLAPR;KRS(0.276)S(0.242)S(0.242)EDAES(0.241)LAPR ;; 190.55 7.08E-18 1021260000 769540 627740 500644 243265 844440 587850 788650 863220 502308 839840 TRUE FALSE FALSE 715599.2199 577995.5962 694506.7645 566333.2139 738522.4611 515327.0438 591321.4285 666683.65 545848.4619 629538.5976 1.136704283 0.918125749 1.103199656 0.899600463 1.173117048 0.818578949 0.939293366 1.059003614 0.867061152 1 19.26393531 -6.267832205 24.99820364 0.940631775 1.034064859 0.218575912 0.101990366 935.8580241 3659526.313 0.033593014 0.030373547 5.40E-07 6.267832205 0.093433084 KRS(ph)SSEDDDLDVES(ph)DFDDASINSYSVSDGSTSR ddPTM_HeLa_A485_30min_R1 1 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSR 33 2 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 KRS(0.334)S(0.334)S(0.334)EDDDLDVES(0.414)DFDDAS(0.414)INS(0.075)Y(0.079)S(0.015)VS(0.001)DGSTSR 48.697 0.019053 52317000 15106 15591 16021 19285 21512 19462 29051 30066 15340 29450 TRUE FALSE FALSE 18466.27758 17414.23183 21947.83459 20338.49072 19370.18975 20481.00023 22844.01653 22692.26636 18418.59729 22108.65699 0.835250988 0.787665747 0.992725818 0.919933342 0.876135975 0.926379211 1.033261158 1.026397324 0.833094353 1 14.43232377 -3.695374929 0.508074837 0.96618976 0.58218181 0.312046312 0.069372505 8.932577825 1.157446675 0.04140244 2.305190282 0.000201662 3.695374929 -0.384007951 KRS(ph)SSEDDDLDVES(ph)DFDDASINSYSVSDGSTSR ddPTM_HeLa_A486_30min_R1 2 KRSSSEDDDLDVESDFDDASINSYSVSDGSTSR 33 2 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 KRS(0.341)S(0.341)S(0.341)EDDDLDVES(0.976)DFDDAS(0.002)INSYSVSDGSTSR;KRS(0.333)S(0.333)S(0.333)EDDDLDVES(1)DFDDASINSYSVSDGSTSR ; 222.45 2.77E-39 163300000 48545 48896 27090 30183 45674 51419 69783 60432 41019 72342 TRUE FALSE FALSE 45142.24619 45021.30288 37579.9735 70267.54936 39945.14103 45075.44657 52322.55531 46672.95282 44574.55995 54227.09233 0.832466655 0.830236344 0.693011037 1.295801533 0.736627013 0.831234806 0.964878496 0.860694365 0.821997972 1 15.72672619 -11.6077498 0.013469176 1.925824975 1.16E-05 0.040993391 0.158032636 20717.00641 33.15206953 2693.889295 2079.034438 2.47E-12 11.6077498 -1.925813354 KRS(ph)VSHGSNHTQKPDEQR ddPTM_HeLa_A485_30min_R1 1 KRSVSHGSNHTQKPDEQR 18 3 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 KRS(0.916)VS(0.042)HGS(0.04)NHT(0.002)QKPDEQR 45.784 0.02324 35235000 14944 36117 28836 7115.5 45657 24958 27224 39713 27078 14541 TRUE FALSE FALSE 18268.24124 40340.56897 39503.63637 7504.201748 41111.22877 26264.76229 21407.37 29973.32448 32512.30623 10916.19631 1.673498784 3.69547852 3.618809634 0.687437413 3.766076352 2.406036091 1.961064953 2.745766349 2.978354851 1 13.41418262 -10.7180278 2.565516127 0.691540252 2.631712898 0.211763186 0.93407638 29884452.77 22722335.88 59008052.24 0.225172497 1.91E-11 10.7180278 1.940172646 KRS(ph)WGHES(ph)PEER ddPTM_HeLa_A485_30min_R1 3 KRSWGHESPEER 12 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 0 KRS(1)WGHES(1)PEER;KRS(1)WGHES(1)PEER;KRS(1)WGHES(1)PEER ;; 177.44 1.20E-11 1726300000 1185390 1300930 1110740 1501550 1820430 1543630 2075820 2323360 1291850 1909980 TRUE FALSE FALSE 1449075.916 1453062.447 1521648.948 1583575.874 1639181.597 1624452.08 1632304.099 1753552.317 1551112.445 1433857.137 1.010613874 1.013394159 1.061227726 1.104416775 1.143197293 1.13292464 1.138400791 1.222961669 1.081776145 1 20.45146986 -5.11504376 1.662421334 1.132675425 1.007511143 0.376975223 0.053569079 0.348812748 1.84993729 0.015818006 0.040808645 7.67E-06 5.11504376 -0.125164282 KRS(ph)WGHES(ph)PEER ddPTM_HeLa_A486_30min_R1 4 KRSWGHESPEER 12 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 0 KRS(1)WGHES(1)PEER;KRS(1)WGHES(1)PEER;KRS(1)WGHES(1)PEER;KRS(1)WGHES(1)PEER ;;; 202.96 2.62E-17 1870280000 2187840 2236520 1490440 1108400 2586980 2496530 2950460 3091630 1917230 2867350 TRUE FALSE FALSE 2034483.714 2059290.01 2067578.283 2580411.215 2262496.846 2188533.511 2212223.701 2387733.339 2083417.04 2149346.897 0.94655903 0.958100348 0.96195653 1.200555955 1.052643875 1.018231871 1.029253912 1.110911106 0.969325632 1 21.03546692 -5.043888499 24.99995644 1.058320027 0.954254111 0.357061313 0.060725805 449.825008 256230.8065 0.016236531 0.0281248 9.04E-06 5.043888499 -0.104065916 KRS(ph)YESANGR ddPTM_HeLa_A485_30min_R1 2 KRSYESANGR 10 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 KRS(1)YESANGR;KRS(0.975)YES(0.025)ANGR ; 100.11 0.0011918 122796000 183685 224749 103120 181010 115502 278110 231111 425690 184325 236257 TRUE FALSE FALSE 224545.0945 251031.4405 141268.3792 190898.118 104002.2153 292671.4096 181732.2468 321288.86 221317.3368 177362.4779 1.266023666 1.415358217 0.796495295 1.076316255 0.586382287 1.650131488 1.024637505 1.811481571 1.247825016 1 17.43634131 -6.282116888 24.99808457 1.37739658 1.039438643 0.198349882 0.316980762 1311.950765 1586078.401 0.109683802 0.096838843 5.22E-07 6.282116888 -0.337957937 KRS(ph)YS(ph)PDGK ddPTM_HeLa_A486_30min_R1 2 KRSYSPDGK 9 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 KRS(0.992)Y(0.012)S(0.996)PDGK;KRS(0.977)Y(0.129)S(0.894)PDGK ; 98.105 0.0014453 282250000 798120 440480 255308 406210 335860 995300 892690 637430 603230 1279180 TRUE FALSE FALSE 742175.9095 405574.7606 354170.095 945677.4087 293733.307 872510.0055 669329.5201 492301.104 655518.4621 958865.0019 0.774015016 0.422973786 0.369363877 0.986246663 0.306334371 0.909940402 0.69804354 0.513420662 0.683639992 1 19.87096819 -14 0.216403522 2.859915402 0.574310056 0.214664337 0.214582672 231.5961374 2.315453141 187.5544734 0.415283501 1.00E-14 14 -2.285605346 KRSEDES(ph)ET(ph)EDEEEK ddPTM_HeLa_A485_30min_R1 1 KRSEDESETEDEEEK 15 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 KRS(0.049)EDES(0.988)ET(0.963)EDEEEK 40.432 0.014259 0 507890 330750 136320 872890 272890 360300 666670 555090 179200 927360 TRUE FALSE FALSE 620868.3783 369428.3354 186750.4407 920573.7704 245720.1134 379164.7509 524230.5083 418953.3072 215163.7963 696186.2188 0.891813658 0.530645861 0.268247828 1.322309672 0.352951706 0.544631222 0.753003283 0.601783396 0.309060694 1 19.40911373 KRSEDES(ph)ET(ph)EDEEEK ddPTM_HeLa_A486_30min_R1 1 KRSEDESETEDEEEK 15 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 KRS(0.012)EDES(0.988)ET(1)EDEEEK 145.77 6.46E-08 623360000 1463500 1101800 284860 1070300 520980 1410500 1964900 1478500 753620 4134300 TRUE FALSE FALSE 1360916.208 1014489.355 395165.4208 2491712.49 455633.8305 1236486.851 1473261.237 1141877.825 818944.3884 3099044.37 0.439140601 0.327355544 0.127512024 0.804026078 0.147023978 0.398989722 0.475392108 0.36846127 0.264257071 1 21.56339198 -10.79674712 2.782403751 1.17031246 0.373683408 0.520428153 0.180717194 165739249.3 127811447.4 191037425.9 0.042432479 1.60E-11 10.79674712 -0.796629051 KRSEDES(ph)ET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_A486_30min_R1 3 KRSEDESETEDEEEKSQEDQEQK 23 3 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 KRS(0.374)EDES(0.644)ET(0.976)EDEEEKS(0.007)QEDQEQK;KRS(0.005)EDES(0.995)ET(1)EDEEEKSQEDQEQK;KRS(0.001)EDES(0.999)ET(1)EDEEEKSQEDQEQK ;; 143.8 1.53E-08 2683480000 609581 482275 109333 1213935 355724 1007757 1745360 1417902 378968 2447330 TRUE FALSE FALSE 566852.5198 444057.7726 151669.6656 2826102.029 311105.7789 883430.1875 1308652.467 1095076.667 411817.2514 1834502.639 0.308995205 0.242058945 0.082676177 1.540527645 0.169585899 0.481563869 0.713355457 0.59693382 0.224484415 1 20.80695755 -14 0.069797831 2.306083085 2.18E-12 0.115207799 0.403184194 790.4953816 3.965507654 178.0809751 22.27107805 1.00E-14 14 -2.306083085 KRSES(ph)PPAELPSLR ddPTM_HeLa_A485_30min_R1 5 KRSESPPAELPSLR 14 2 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 KRS(0.237)ES(0.763)PPAELPSLR;KRS(0.155)ES(0.845)PPAELPSLR;KRS(0.034)ES(0.966)PPAELPSLR;KRS(0.204)ES(0.796)PPAELPSLR;KRS(0.137)ES(0.863)PPAELPSLR ;;;; 155.28 1.23E-08 632700000 474337 627076 510010 550199 819443 689854 868001 1126860 596344 797714 TRUE FALSE FALSE 579851.6292 700407.0834 698683.9223 580254.9782 737856.3777 725973.6887 682545.4954 850495.8182 716024.7708 598858.5806 0.968261369 1.169570089 1.16669268 0.968934899 1.232104543 1.212262314 1.139744036 1.42019476 1.19564918 1 19.19185583 -5.794253772 24.96622433 1.218603358 1.082617061 0.22145206 0.116629811 269.2474851 204850.4787 0.035333771 0.04006746 1.61E-06 5.794253772 -0.135986298 KRSES(ph)PPAELPSLR ddPTM_HeLa_A486_30min_R1 2 KRSESPPAELPSLR 14 2 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 KRS(0.007)ES(0.993)PPAELPSLR;KRS(0.155)ES(0.845)PPAELPSLR ; 155.79 1.09E-08 337380000 291800 259759 199674 109389 343810 279006 347720 360720 216363 323540 TRUE FALSE FALSE 271346.3269 239174.7508 276993.1203 254663.1202 300686.1439 244585.0764 260716.7782 278591.9305 235117.519 242523.4781 1.118845602 0.986192152 1.142129094 1.050055534 1.239822826 1.008500613 1.075016655 1.148721487 0.969462919 1 17.88776489 -7.774754318 24.99211852 0.98473137 1.093652293 0.288392114 0.069925581 331.0588742 621378.07 0.063077324 0.016674021 1.68E-08 7.774754318 0.108920924 KRSES(ph)PPAELPSLRR ddPTM_HeLa_A485_30min_R1 1 KRSESPPAELPSLRR 15 3 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 KRS(0.018)ES(0.982)PPAELPSLRR 118.52 0.00058932 392880000 111120 246390 133040 76872 240950 284060 329140 643370 166490 158780 TRUE FALSE FALSE 135838.2606 275203.1672 182257.0323 81071.32271 216960.172 298932.9424 258816.5502 485582.4987 199903.0159 119199.0681 1.139591632 2.308769452 1.529013902 0.680133863 1.8201499 2.507846303 2.171296758 4.073710528 1.677051834 1 16.86301343 -6.130566223 4.068196063 2.469152765 1.464157466 0.177545508 0.831395716 0.346284805 9.734176699 0.275974957 0.277700684 7.40E-07 6.130566223 -1.004995299 KRSGNS(ph)DSIER ddPTM_HeLa_A486_30min_R1 1 KRSGNSDSIER 11 2 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 1 0 KRS(0.47)GNS(0.528)DS(0.002)IER 111.07 0.00036962 972720000 1240800 808790 964860 695720 1065700 1745200 1478300 1311100 1199800 1626400 TRUE FALSE FALSE 1153826.327 744698.5348 1338479.632 1619671.32 932029.9687 1529894.968 1108413.704 1012591.151 1303799.63 1219138.854 0.946427328 0.610839801 1.097889406 1.3285372 0.764498618 1.254898048 0.909177573 0.830579017 1.069443096 1 20.21743102 -4.776107325 24.98358926 1.030455708 0.778633505 0.238307301 0.181086632 287.3633671 489461.1906 0.046660545 0.097794757 1.67E-05 4.776107325 -0.251822203 KRSIS(ph)ESS(ph)R ddPTM_HeLa_A486_30min_R1 1 KRSISESSR 9 2 Q9H307 Q9H307 PNN Pinin 2 0 KRS(0.103)IS(0.902)ES(0.142)S(0.853)R 84.169 0.0028524 0 1344000 1054300 730700 608360 1258500 1357900 1539400 1498600 988230 1890700 TRUE FALSE FALSE 1249792.54 970753.4283 1013646.609 1416292.825 1100647.195 1190376.104 1154225.838 1157401.494 1073890.572 1417256.414 0.881839396 0.684952574 0.715217514 0.999320103 0.776604138 0.839915835 0.814408619 0.816649325 0.757724969 1 20.43466937 -10.39650377 2.941840867 1.003200782 0.809028397 0.316504938 0.083923836 27797747.09 33270826.61 751190.8561 0.022429316 4.01E-11 10.39650377 -0.194172386 KRSPS(ph)PS(ph)PTPEAK ddPTM_HeLa_A486_30min_R1 1 KRSPSPSPTPEAK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 KRS(0.369)PS(0.653)PS(0.973)PT(0.005)PEAK 145.48 3.34E-07 8121900000 14671000 12541000 5979000 7373600 11750000 15894000 20487000 18913000 10483000 25200000 TRUE FALSE FALSE 13642638.66 11547205.49 8294228.923 17166113.44 10276205.44 13933159.88 15360935.91 14606922.77 11391674.88 18889755.98 0.722224187 0.611294582 0.439086081 0.908752525 0.544009433 0.737604017 0.81318869 0.773272179 0.603060987 1 24.17110073 -14 0.151445841 2.120510023 0.589844102 0.350922094 0.13016124 148.4206693 1.327245503 50.08662304 0.633094592 1.00E-14 14 -1.530665921 KRSS(ph)LS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 KRSSLSPGR 9 2 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 KRS(0.025)S(0.975)LS(0.999)PGR 101.43 0.0062135 848810000 571140 634370 451430 647000 647210 690870 862060 1001000 541440 819870 TRUE FALSE FALSE 698188.1226 708554.0532 618432.7426 682343.9717 582771.4999 727042.8849 677873.8386 755503.1805 650102.0416 615491.4976 1.13435868 1.151200392 1.004778693 1.108616406 0.946839237 1.181239526 1.101353701 1.227479475 1.056232367 1 19.2313794 KRSS(ph)LS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 KRSSLSPGR 9 2 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 KRS(0.488)S(0.526)LS(0.985)PGR;KRS(0.078)S(0.923)LS(0.999)PGR ; 98.902 0.0077282 4860200000 8539200 6907300 4989900 3383000 6944100 8038400 8697800 8186100 6129900 9706400 TRUE FALSE FALSE 7940646.176 6359940.392 6922122.914 7875794.967 6073106.227 7046703.936 6521518.444 6322303.731 6661244.668 7275854.262 1.091369603 0.874115968 0.951382843 1.082456394 0.834693221 0.968505372 0.896323402 0.868943151 0.915527501 1 22.79468521 -5.77076304 24.99993107 0.909287511 0.987390954 0.241704125 0.072877518 309.2589476 829226.9594 0.021923177 0.025191605 1.70E-06 5.77076304 0.078103443 KRSWGHES(ph)PEER ddPTM_HeLa_A485_30min_R1 1 KRSWGHESPEER 12 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 KRS(0.013)WGHES(0.987)PEER 64.65 0.0088994 15940000 12304 47598 31688 15617 40581 50713 56627 97563 24543 19020 TRUE FALSE FALSE 15040.98235 53164.17205 43410.70985 16470.11717 36540.61315 53368.25426 44528.17885 73635.52128 29468.55498 14278.66404 1.05338863 3.723329572 3.040250106 1.153477463 2.559105884 3.73762238 3.118511559 5.157031574 2.063817378 1 13.80157338 -6.093176536 6.759913621 3.27499103 2.340134057 0.056988001 1.260693298 0.583659175 36.07792343 0.404510196 0.405938309 8.07E-07 6.093176536 -0.934856973 KRT(ph)EEPDRDER ddPTM_HeLa_A485_30min_R1 10 KRTEEPDRDER 11 3 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 1 0 KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER ;;;;;;;;; 196.18 1.17E-11 76993500000 10624470 10061196 7715304 14785501 12516488 11098025 17102720 17189880 10179358 17317150 TRUE FALSE FALSE 12987846.7 11237765.35 10569516.01 15593195.48 11270302.51 11679100.43 13448584.16 12974034.98 12222261.78 13000303.2 0.99904183 0.864423327 0.813020731 1.1994486 0.866926127 0.898371388 1.034482346 0.997979414 0.940152056 1 23.63204194 KRT(ph)EEPDRDER ddPTM_HeLa_A486_30min_R1 12 KRTEEPDRDER 11 3 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 1 0 KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER;KRT(1)EEPDRDER ;;;;;;;;;;; 192.65 6.59E-11 68148279000 16114622 12362757 9128612 8786940 13773997 17892192 20579491 17701265 13338416 22409486 TRUE FALSE FALSE 14985070.21 11383087.11 12663455.04 20456440.39 12046333.86 15684835.27 15430284.68 13671073.38 14494600.64 16798004.84 0.892074407 0.677645186 0.753866614 1.217789885 0.717128848 0.933732036 0.918578416 0.81385102 0.862876322 1 24.00178655 -1.000097746 0.024305516 1.521222797 8.63E-06 0.072598584 0.143182412 6426.85445 12.04252171 261.9646831 537.0543446 0.099977496 1.000097746 -1.521214171 KRT(ph)PNETTSVLEPK ddPTM_HeLa_A485_30min_R1 2 KRTPNETTSVLEPK 14 2 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 KRT(0.978)PNET(0.007)T(0.007)S(0.009)VLEPK;KRT(0.993)PNET(0.006)T(0.001)SVLEPK ; 103.88 0.0013259 346600000 752600 631790 423488 1143110 903970 831630 1311020 1363750 650750 1440140 TRUE FALSE FALSE 920013.2736 705672.3447 580153.834 1205555.205 813967.5728 875172.8609 1030909.867 1029288.174 781349.556 1081139.602 0.850966214 0.652711586 0.536613249 1.115078203 0.75287925 0.809491077 0.95354001 0.952040026 0.722709218 1 20.04412139 -5.24714203 24.99895378 0.891048498 0.677358489 0.368261456 0.132030962 892.3565407 1560285.421 0.03520071 0.060610976 5.66E-06 5.24714203 -0.213690009 KRT(ph)PNETTSVLEPK ddPTM_HeLa_A486_30min_R1 1 KRTPNETTSVLEPK 14 2 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 KRT(0.536)PNET(0.222)T(0.222)S(0.02)VLEPK 102.78 0.00049175 247130000 718640 656680 277370 344720 632030 833070 1003900 942650 487110 1108100 TRUE FALSE FALSE 668267.0471 604642.2852 384775.0922 802525.5812 552754.904 730294.2934 752713.6018 728029.1729 529333.087 830624.5475 0.804535634 0.727936933 0.463235879 0.966171279 0.66546902 0.879211066 0.906201971 0.876484057 0.637271182 1 19.66383698 -5.279709366 24.99331289 0.838324651 0.671506182 0.271605978 0.135933161 1124.02513 1537662.165 0.037498357 0.055739496 5.25E-06 5.279709366 -0.166818469 KRT(ph)PSPS(ph)YQR ddPTM_HeLa_A486_30min_R1 1 KRTPSPSYQR 10 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 KRT(0.859)PS(0.387)PS(0.754)YQR 93.478 0.0022268 798490000 1517900 1820200 1249300 785090 2168700 1913900 2233600 2396300 1514200 2016700 TRUE FALSE FALSE 1411503.048 1675960.723 1733062.417 1827729.196 1896681.424 1677782.477 1674729.655 1850714.801 1645452.075 1511705.193 0.933715816 1.108655795 1.146428831 1.209051344 1.254663563 1.109860894 1.107841438 1.224256428 1.088474183 1 20.52774539 -4.246112423 2.391964292 1.154387846 0.876865907 0.428766461 0.070931823 0.519090089 3.495959205 0.018006071 0.302935787 5.67E-05 4.246112423 -0.277521939 KRT(ph)SFDDRLEDDDFDLIEENLGVK ddPTM_HeLa_A485_30min_R1 1 KRTSFDDRLEDDDFDLIEENLGVK 24 3 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 KRT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK 120.57 7.03E-05 65242000 98521 74744 54149 115560 114130 107600 167990 184530 73935 176130 TRUE FALSE FALSE 120436.6566 83484.66061 74180.96843 121872.7502 102766.8165 113233.7696 132097.5641 139273.7282 88773.07633 132224.0324 0.910853 0.631387949 0.561024854 0.921714063 0.777217383 0.85637813 0.99904353 1.053316297 0.671383823 1 17.01262489 -5.856124803 1.278358814 0.92623371 0.71070838 0.250567841 0.140139339 0.58545559 2.010661959 0.058145921 0.075707305 1.39E-06 5.856124803 -0.21552533 KRT(ph)SFDDRLEDDDFDLIEENLGVK ddPTM_HeLa_A486_30min_R1 2 KRTSFDDRLEDDDFDLIEENLGVK 24 3 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 KRT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK;KRT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK ; 158.12 5.32E-10 121359000 200582 170618 82447 112566 183464 216767 283610 277960 135619 284880 TRUE FALSE FALSE 186522.2376 157097.6083 114372.6864 262059.3368 160452.2344 190024.4915 212647.7783 214674.5758 147374.5641 213544.1937 0.873459654 0.735667899 0.535592583 1.227190176 0.751377181 0.889860259 0.995802202 1.005293434 0.690136133 1 17.70417515 -5.240290256 24.99924772 0.930054675 0.716982871 0.290759469 0.158746416 1078.770739 1275155.723 0.041827332 0.072356023 5.75E-06 5.240290256 -0.213071805 KRT(ph)SSEDNLYLAVLR ddPTM_HeLa_A485_30min_R1 1 KRTSSEDNLYLAVLR 15 2 Q15149-4 Q15149-4 PLEC Plectin 1 0 KRT(0.333)S(0.333)S(0.333)EDNLYLAVLR 192.69 2.52E-18 665160000 324170 937640 514660 156420 764100 1067700 1149300 2438700 392760 242370 TRUE FALSE FALSE 396280.4981 1047288.842 705054.1508 164964.8285 688023.5211 1123603.121 903742.6661 1840605.001 471583.3294 181951.6195 2.177944331 5.755864359 3.874953973 0.906641166 3.781354203 6.175285079 4.966939391 10.11590337 2.591806166 1 17.47319537 -4.241010336 22.99122523 4.572728609 2.177938272 0.054586432 2.570836272 4834.832 5440953.855 0.651100794 22.70250739 5.74E-05 4.241010336 -2.394790337 KRT(ph)SSEDNLYLAVLR ddPTM_HeLa_A486_30min_R1 2 KRTSSEDNLYLAVLR 15 2 Q15149-4 Q15149-4 PLEC Plectin 1 0 KRT(0.333)S(0.333)S(0.333)EDNLYLAVLR;KRT(0.371)S(0.371)S(0.258)EDNLYLAVLR ; 197.28 3.26E-25 762070000 931145 455331 490807 378007 1153495 414210 788260 874698 316633 752066 TRUE FALSE FALSE 865876.5439 419248.9133 680860.6147 880019.3994 1008812.901 363108.9816 591029.0106 675548.3599 344079.0034 563743.7785 1.535939867 0.743686989 1.207748344 1.561027249 1.78948831 0.644102863 1.048400059 1.198325171 0.610346431 1 19.10468008 -6.277356396 24.99425968 0.921890571 1.334785304 0.364953439 0.306053394 1112.434963 1746835.503 0.113595076 0.100502282 5.28E-07 6.277356396 0.412894733 KRTEEPDRDER ddPTM_HeLa_A485_30min_R1 8 KRTEEPDRDER 11 3 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 0 0 ;;;;;;; ;;;;;;; 187.62 8.10E-11 541145000 326922.2 504553 327883.1 269031.7 410815.1 537174 624935 907323 399829 418446 FALSE FALSE TRUE 399644.9155 563556.0843 449180.703 283728.2205 369912.9062 565299.6 491412.532 684800.6116 480071.0129 314135.1131 1.272207082 1.793992651 1.429896514 0.903204413 1.17755988 1.79954286 1.564334936 2.17995564 1.528230983 1 18.26102569 -6.26467206 24.99321557 1.685030245 1.325426398 0.141715013 0.346398714 486.1435762 3758563.288 0.120943938 0.111162198 5.44E-07 6.26467206 -0.359603847 KRTEEPDRDER ddPTM_HeLa_A486_30min_R1 8 KRTEEPDRDER 11 3 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 0 0 ;;;;;;; ;;;;;;; 131.17 2.83E-05 231818000 240932 153210.9 173703 96173.7 191266 227495.4 247510 227575.9 188516.2 266789 FALSE FALSE TRUE 224043.911 141069.9103 240965.4535 223897.2339 167275.6348 199429.3306 185580.3801 175761.8355 204856.936 199983.2979 1.120313113 0.705408461 1.204927892 1.119579666 0.836448026 0.997229932 0.927979397 0.878882574 1.024370226 1 17.60951999 -5.757496177 24.99752221 0.939941124 1.025787385 0.10071576 0.134560588 278.6923955 1766728.467 0.040284945 0.050073014 1.75E-06 5.757496177 0.085846261 KRTS(ph)SEDNLYLAVLR ddPTM_HeLa_A485_30min_R1 2 KRTSSEDNLYLAVLR 15 2 Q15149-4 Q15149-4 PLEC Plectin 1 0 KRT(0.035)S(0.756)S(0.209)EDNLYLAVLR;KRT(0.109)S(0.86)S(0.03)EDNLYLAVLR ; 186.36 4.55E-18 445300000 131991 393010 226625 103535 360090 479550 468100 1021420 179366 149483 TRUE FALSE FALSE 161351.9426 438969.1008 310463.0182 109190.8549 324238.1752 504658.4965 368086.611 770915.1435 215363.111 112219.6391 1.437822683 3.911695886 2.766565822 0.973010212 2.889317572 4.497060411 3.280055201 6.869699007 1.9191214 1 16.77596565 -6.010975392 23.65893806 3.846330298 2.362992165 0.094978756 1.644686874 495.3530049 1067804.521 0.506753593 0.538068048 9.75E-07 6.010975392 -1.483338133 KRTSS(ph)EDNLYLAVLR ddPTM_HeLa_A485_30min_R1 1 KRTSSEDNLYLAVLR 15 2 Q15149-4 Q15149-4 PLEC Plectin 1 0 KRT(0.249)S(0.249)S(0.501)EDNLYLAVLR 212.69 2.25E-26 803230000 455950 1510000 815810 301150 1216300 1693100 1798500 4201900 648720 493750 TRUE FALSE FALSE 557374.5045 1686581.365 1117612.068 317601.0619 1095200.901 1781748.098 1414235.783 3171377.437 778912.1536 370667.2118 1.503705984 4.550122889 3.015136036 0.856836137 2.954674345 4.806867296 3.815378694 8.555861797 2.101378619 1 18.49976498 -6.185055687 5.163042941 4.511502393 2.588631904 0.094388313 2.081527076 0.415977888 20.05454233 0.677116051 0.674251258 6.53E-07 6.185055687 -1.92287049 KRVS(ph)LEPHQGPGT(ph)PESK ddPTM_HeLa_A485_30min_R1 4 KRVSLEPHQGPGTPESK 17 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 2 0 KRVS(1)LEPHQGPGT(0.999)PES(0.001)K;KRVS(1)LEPHQGPGT(1)PESK;KRVS(1)LEPHQGPGT(0.99)PES(0.01)K;KRVS(1)LEPHQGPGT(1)PESK ;;; 190.33 3.12E-17 3923140000 2248950 1843610 1296810 2931880 2617170 2378260 3557610 3731100 1772650 3695860 TRUE FALSE FALSE 2749221.169 2059204.152 1776553.984 3092041.18 2356595.365 2502782.016 2797497.56 2816041.875 2128404.595 2774550.119 0.99087097 0.742175871 0.640303439 1.114429744 0.849361253 0.902049669 1.008270689 1.014954408 0.767117011 1 21.40382243 -5.25691996 24.99901996 0.94763268 0.786222685 0.265080454 0.121740408 521.944348 2887108.4 0.032920744 0.054616578 5.53E-06 5.25691996 -0.161409995 KRVS(ph)LEPHQGPGT(ph)PESK ddPTM_HeLa_A486_30min_R1 5 KRVSLEPHQGPGTPESK 17 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 2 0 KRVS(1)LEPHQGPGT(1)PESK;KRVS(1)LEPHQGPGT(0.987)PES(0.013)K;KRVS(1)LEPHQGPGT(0.994)PES(0.006)K;KRVS(0.998)LEPHQGPGT(0.955)PES(0.047)K;KRVS(1)LEPHQGPGT(0.998)PES(0.002)K ;;;; 167.28 2.79E-11 3558750000 2025960 1752720 869126 1088899 1805800 2153410 2835460 2696400 1456612 3239010 TRUE FALSE FALSE 1883950.666 1613828.084 1205674.863 2535011.902 1579299.726 1887744.168 2125997.918 2082488.582 1582872.301 2427940.814 0.775945878 0.664690043 0.496583301 1.044099546 0.650468791 0.777508314 0.87563828 0.857718018 0.651940234 1 21.21130182 -13.99999999 0.088759756 1.735857497 0.563887954 0.210313039 0.143331891 341.9653551 2.110226302 48.56091438 3.520537913 1.00E-14 13.99999999 -1.171969543 KRVS(ph)VELTNSLFK ddPTM_HeLa_A485_30min_R1 2 KRVSVELTNSLFK 13 2 P14923 P14923 JUP Junction plakoglobin 1 0 KRVS(1)VELTNSLFK;KRVS(1)VELTNSLFK ; 203.93 1.04E-21 2419700000 1461560 1218900 645900 1199400 1074340 1736650 2025830 2322400 1087160 2385500 TRUE FALSE FALSE 1786678.98 1361439.752 884845.2881 1264920.185 967374.9374 1827578.309 1592994.871 1752827.759 1305343.04 1790838.752 0.997677193 0.760224644 0.494095455 0.706328352 0.54017981 1.020515279 0.889524458 0.978774754 0.728900376 1 20.77220401 -6.269409752 24.98984379 0.920090238 0.692009155 0.364349486 0.147619721 697.5743758 2187128.051 0.052606127 0.047212255 5.38E-07 6.269409752 -0.228081083 KRVS(ph)VELTNSLFK ddPTM_HeLa_A486_30min_R1 2 KRVSVELTNSLFK 13 2 P14923 P14923 JUP Junction plakoglobin 1 0 KRVS(1)VELTNSLFK;KRVS(1)VELTNSLFK ; 228.3 7.06E-28 2129730000 1373760 1265460 768870 631080 1484660 1491140 1745170 1632180 1164880 2073330 TRUE FALSE FALSE 1277466.518 1165180.341 1066597.055 1469186.133 1298440.099 1307178.308 1308510.007 1260568.244 1265852.736 1554154.673 0.821968714 0.749719678 0.686287584 0.945328132 0.835463884 0.841086367 0.841943231 0.811095746 0.814495982 1 20.56769866 -14 0.178276795 1.724100172 0.778468745 0.442832977 0.062465536 134.1809842 1.287161925 34.56055563 0.211198674 1.00E-14 14 -0.945631427 KRVSLEPHQGPGT(ph)PESK ddPTM_HeLa_A485_30min_R1 2 KRVSLEPHQGPGTPESK 17 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KRVSLEPHQGPGT(1)PESK;KRVSLEPHQGPGT(1)PESK ; 155.76 2.06E-08 2796800000 1345990 2994400 1847230 1293570 3051700 3384000 4494000 5882800 2239800 2388100 TRUE FALSE FALSE 1645400.832 3344569.032 2530597.247 1364234.454 2747862.033 3561181.007 3533820.187 4440034.076 2689307.315 1792790.62 0.917787506 1.865565892 1.411540879 0.760955819 1.532728921 1.986389804 1.971128222 2.476604924 1.500067708 1 20.77377557 -6.042566674 5.742465908 1.881210205 1.278299916 0.229886088 0.453633258 0.266243507 22.65809584 0.146797122 0.150589604 9.07E-07 6.042566674 -0.602910288 KRYS(ph)DIFR ddPTM_HeLa_A486_30min_R1 1 KRYSDIFR 8 2 Q9P107;Q9P107-2;K7ELE8 Q9P107 GMIP GEM-interacting protein 1 0 KRYS(1)DIFR 93.345 0.0023948 232880000 348900 333860 278630 145870 393620 287040 351430 368610 256490 336350 TRUE FALSE FALSE 324443.9117 307403.7177 386522.998 339592.7319 344248.5092 251627.9232 263498.497 284685.5497 278722.7597 252125.7707 1.286833594 1.219247508 1.533056287 1.346917972 1.365384063 0.9980254 1.045107353 1.129141019 1.105490958 1 17.94378406 -6.255069956 24.97962512 1.062971408 1.35297446 0.757123052 0.083406536 268.8604548 1054418.704 0.02918193 0.028506526 5.56E-07 6.255069956 0.290003052 KS(ph)ASPEVSEGHENQHGQESEAK ddPTM_HeLa_A486_30min_R1 1 KSASPEVSEGHENQHGQESEAK 22 1 O60930 O60930 RNASEH1 Ribonuclease H1 1 0 KS(0.758)AS(0.242)PEVSEGHENQHGQESEAK 219.26 6.32E-36 732340000 607580 577460 335870 153050 579760 629210 913030 801430 475370 725150 TRUE FALSE FALSE 564991.7795 531699.9665 465927.8589 356308.1347 507041.0948 551584.4675 684580.237 618961.8841 516575.4543 543567.7201 1.039413782 0.978166927 0.857166167 0.65549907 0.932802071 1.014748388 1.259420329 1.138702431 0.950342405 1 19.05210026 -6.337226949 3.353716285 1.100989524 0.88046286 0.356081891 0.122180069 0.272976409 5.989519494 0.048560414 0.042961294 4.60E-07 6.337226949 -0.220526664 KS(ph)ESPFRETEPLVSPHQDK ddPTM_HeLa_A485_30min_R1 1 KSESPFRETEPLVSPHQDK 19 2 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 KS(0.661)ES(0.339)PFRETEPLVSPHQDK 138.62 3.86E-07 277110000 147820 128320 93925 184680 207760 162940 280420 281770 141410 259170 TRUE FALSE FALSE 180702.049 143325.9078 128671.766 194768.6008 187074.6849 171471.2864 220505.9762 212665.4657 169789.6899 194563.6887 0.928755259 0.736652912 0.661334943 1.001053188 0.961508729 0.88131186 1.13333571 1.093037797 0.87266895 1 17.56988296 -5.279564419 24.37160163 0.995747638 0.771688232 0.505493883 0.09794574 458.7715323 616880.2823 0.028446096 0.042297113 5.25E-06 5.279564419 -0.224059405 KS(ph)FTPDHVVYAR ddPTM_HeLa_A485_30min_R1 1 KSFTPDHVVYAR 12 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 KS(0.8)FT(0.199)PDHVVYAR 72.47 0.0063321 658430000 684010 535160 414660 539160 939610 537880 615290 698980 342570 528210 TRUE FALSE FALSE 836165.6647 597742.3067 568059.9894 568612.9456 846059.1292 566042.5651 483828.265 527554.059 411320.6568 396536.968 2.108670142 1.507406257 1.432552411 1.433946874 2.133619807 1.427464803 1.220134071 1.33040322 1.037281994 1 18.59709584 -6.581573804 4.026162949 1.178344517 1.687627103 0.537670752 0.249254222 0.2006162 6.678181113 0.100752999 0.077731538 2.62E-07 6.581573804 0.509282586 KS(ph)FTPDHVVYAR ddPTM_HeLa_A486_30min_R1 2 KSFTPDHVVYAR 12 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 KS(0.5)FT(0.5)PDHVVYAR;KS(0.922)FT(0.078)PDHVVYAR ; 115.78 0.00021547 1956530000 148070 143790 111580 47508 194670 142580 168190 170960 108830 146350 TRUE FALSE FALSE 137691.0576 132395.5567 154786.7642 110601.0249 170252.6734 124989.9292 126107.0831 132036.14 118263.472 109703.0074 1.255125642 1.206854396 1.410961904 1.008185897 1.551941714 1.139348247 1.149531686 1.203578125 1.07803309 1 16.74324355 -7.638647604 0.740956135 1.002138196 1.270140319 0.282157217 0.139053149 0.824381844 0.968658188 0.126536908 0.052940329 2.30E-08 7.638647604 0.268002123 KS(ph)GSELPSILPEIWPK ddPTM_HeLa_A485_30min_R1 2 KSGSELPSILPEIWPK 16 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 KS(0.495)GS(0.495)ELPS(0.011)ILPEIWPK;KS(0.443)GS(0.443)ELPS(0.115)ILPEIWPK ; 90.444 0.00060735 144238000 205170 145286 84459 285830 212160 171557 260240 229520 144960 346420 TRUE FALSE FALSE 250809.3587 162275.9339 115703.8987 301444.1691 191036.6055 180539.4592 204637.598 173229.8601 174052.1423 260063.8694 0.96441447 0.623984924 0.444905703 1.159115912 0.734575725 0.694212001 0.786874388 0.666105063 0.66926691 1 17.98850645 KS(ph)GSELPSILPEIWPK ddPTM_HeLa_A486_30min_R1 1 KSGSELPSILPEIWPK 16 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 KS(0.5)GS(0.5)ELPSILPEIWPK 129.12 1.03E-05 90402000 144070 141330 61928 72152 114070 178610 200490 184630 115540 210510 TRUE FALSE FALSE 133971.437 130130.4961 85908.18009 167973.5024 99762.27694 156574.9142 150325.2814 142593.7794 125555.1002 157796.9258 0.849011705 0.824670667 0.544422394 1.064491602 0.632219395 0.992255796 0.952650254 0.903653723 0.795675198 1 17.26770957 -6.287808572 24.99535409 0.924313053 0.787668402 0.215229581 0.139003067 1285.074099 1218117.264 0.047172278 0.041615025 5.15E-07 6.287808572 -0.136644651 KS(ph)GVSSDNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A485_30min_R1 1 KSGVSSDNEDDDDEEDGNYLHPSLFASK 28 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 KS(0.409)GVS(0.295)S(0.295)DNEDDDDEEDGNYLHPSLFASK 145.86 3.64E-09 168030000 71639 74312 40743 39943 121710 76533 129920 136420 69770 95571 TRUE FALSE FALSE 87574.8484 83002.14197 55815.53116 42124.98495 109592.1251 80540.14954 102161.5307 102962.7811 83772.19903 71746.90855 1.22060797 1.156874124 0.77795033 0.587133102 1.527482191 1.122559162 1.423915437 1.435083172 1.167607089 1 16.13062905 -5.77413676 24.99852821 1.300574909 0.940180002 0.359234124 0.223844783 251.3249949 494805.4047 0.071535444 0.081640474 1.68E-06 5.77413676 -0.360394907 KS(ph)KS(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A486_30min_R1 1 KSKSPPKVPIVIQDDSLPAGPPPQIR 26 3 Q7Z422-4;Q7Z422-5;Q7Z422 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 2 0 KS(1)KS(1)PPKVPIVIQDDSLPAGPPPQIR 131.9 3.26E-06 365110000 185840 165330 27943 221640 112890 260390 399590 344090 103500 511790 TRUE FALSE FALSE 172813.5757 152228.6487 38763.27794 515989.1211 98730.28354 228265.7293 299608.3556 265748.2184 112471.4633 383634.4528 0.450464171 0.396806511 0.101042223 1.345002039 0.257355102 0.595008419 0.780973537 0.692712077 0.293173521 1 18.54937276 -14 0.061584123 2.291909353 2.19E-07 0.132012287 0.333293012 848.7988517 3.802101544 172.1532053 27.34373358 1.00E-14 14 -2.291909134 KS(ph)KSPPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A485_30min_R1 2 KSKSPPKVPIVIQDDSLPAGPPPQIR 26 3 Q7Z422-4;Q7Z422-5;Q7Z422 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 KS(0.583)KS(0.417)PPKVPIVIQDDSLPAGPPPQIR;KS(0.69)KS(0.31)PPKVPIVIQDDSLPAGPPPQIR ; 197.81 2.08E-27 4775900000 1079720 745453 397840 1560220 1049920 1252320 2249690 2429440 754840 2095970 TRUE FALSE FALSE 1319899.989 832627.2438 545017.5715 1645450.868 945386.2783 1317889.539 1769025.353 1833616.031 906329.4642 1573483.252 0.838839554 0.529161809 0.346376468 1.04573777 0.600823858 0.837561847 1.124273392 1.165322877 0.576001977 1 20.58553039 -6.014256518 1.135973626 0.970704645 0.612147096 0.246736618 0.231339838 0.646959448 1.763091032 0.109725872 0.125202489 9.68E-07 6.014256518 -0.358557549 KS(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_HeLa_A485_30min_R1 3 KSLPEEDVAEIQHAEEFLIKPESK 24 2 O60832;O60832-2;H7C2Q9;H7C0M1;C9IYT0 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KS(1)LPEEDVAEIQHAEEFLIKPESK;KS(1)LPEEDVAEIQHAEEFLIKPESK;KS(1)LPEEDVAEIQHAEEFLIKPESK ;; 222.98 1.77E-38 365536000 147399.4 86817.4 51531 218345.4 151336.7 119819.8 225275.9 218821.6 93460.8 301938.4 TRUE FALSE FALSE 180187.888 96969.93972 70594.46128 230273.0563 136269.0868 126093.3795 177143.8636 165155.2595 112217.5253 226670.7136 0.794932372 0.427800919 0.311440592 1.015892405 0.601176414 0.556284389 0.781503092 0.728613136 0.495068478 1 17.79023848 -14 0.244199356 3.103804659 0.600193414 0.229930891 0.195337214 269.1538293 2.681456268 282.3847222 0.301867772 1.00E-14 14 -2.503611245 KS(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_HeLa_A486_30min_R1 3 KSLPEEDVAEIQHAEEFLIKPESK 24 2 O60832;O60832-2;H7C2Q9;H7C0M1;C9IYT0 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KS(1)LPEEDVAEIQHAEEFLIKPESK;KS(1)LPEEDVAEIQHAEEFLIKPESK;KS(1)LPEEDVAEIQHAEEFLIKPESK ;; 236.34 4.23E-49 414900000 225016 204011 68473.8 146083 181103 275812 370404 327365 154887 356486 TRUE FALSE FALSE 209243.5404 187844.4254 94988.68915 340088.6066 158387.373 241785.1197 277725.0015 252831.1358 168312.7299 267219.5853 0.783039687 0.702959048 0.355470536 1.272693415 0.592723669 0.904818108 1.039313796 0.946154959 0.629866743 1 18.02766623 -5.247860278 24.99744133 0.901655125 0.62273673 0.296545389 0.210036389 1063.887889 1958482.654 0.055476871 0.095437634 5.65E-06 5.247860278 -0.278918396 KS(ph)LS(ph)PGVSR ddPTM_HeLa_A486_30min_R1 1 KSLSPGVSR 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 KS(0.999)LS(0.98)PGVS(0.021)R 40.751 0.033463 576510000 622270 641520 408360 340820 712220 778440 892030 930080 578440 1006400 TRUE FALSE FALSE 578652.0864 590683.6188 566487.9283 793446.1841 622886.7264 682403.9874 668834.6591 718321.0875 628579.6449 754390.8894 0.767045433 0.782994104 0.750920956 1.051770634 0.825681666 0.904576125 0.886588993 0.952186854 0.833228044 1 19.52495273 -5.220326389 24.99989133 0.913797153 0.768587491 0.534429707 0.06598823 394.3385774 239787.9625 0.016794772 0.02908895 6.02E-06 5.220326389 -0.145209661 KS(ph)LSDSESDDS(ph)K ddPTM_HeLa_A486_30min_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 KS(0.885)LS(0.151)DS(0.011)ES(0.004)DDS(0.949)K 170.09 7.02E-11 413270000 625630 552740 186840 616260 433280 797880 1199700 1021100 391630 1501600 TRUE FALSE FALSE 581776.5678 508938.8694 259189.4517 1434684.424 378933.9822 699445.6778 899522.3709 788617.8205 425576.8037 1125589.586 0.516863851 0.452153143 0.230269945 1.274607052 0.336653774 0.621403828 0.799156621 0.700626436 0.378092343 1 20.10224946 -14 0.145504076 2.271431908 0.477383507 0.14896972 0.282808165 277.8247388 2.432306719 104.5174346 1.554135057 1.00E-14 14 -1.794048401 KS(ph)LSIR ddPTM_HeLa_A485_30min_R1 1 KSLSIR 6 1 Q68DL7 Q68DL7 C18orf63 Uncharacterized protein C18orf63 1 0 KS(0.81)LS(0.19)IR 50.703 0.033699 278660000 174070 187440 153740 194870 196530 184460 210130 205540 191450 279590 TRUE FALSE FALSE 212791.271 209359.4775 210614.8237 205515.2547 176962.7831 194118.0404 165234.0089 155130.9927 229872.2589 209893.3585 1.013806595 0.997456418 1.003437294 0.979141294 0.843108064 0.924841271 0.787228382 0.739094337 1.095185958 1 17.67929699 -5.650486823 5.413998401 0.881272088 1.001961111 0.197116812 0.096206166 0.295099441 12.88843297 0.028234651 0.036562438 2.24E-06 5.650486823 0.120689023 KS(ph)MKS(ph)S(ph)TYEELDR ddPTM_HeLa_A486_30min_R1 1 KSMKSSTYEELDR 13 2 Q4W5G0 Q4W5G0 TIGD2 Tigger transposable element-derived protein 2 3 0 KS(0.709)MKS(0.781)S(0.598)T(0.545)Y(0.366)EELDR 52.522 0.016188 84462000 1401.8 1929.2 1181.6 0 2137.8 2519.6 1941.7 1313.9 1358.1 2669.7 TRUE FALSE FALSE 1303.541059 1776.323166 1639.147164 0 1869.65719 2208.757369 1455.866123 1014.753652 1475.821201 2001.189743 0.65138304 0.887633555 0.819086331 0 0.934272823 1.103722112 0.727500292 0.507075182 0.7374719 1 10.96664225 KS(ph)NFSNSADDIK ddPTM_HeLa_A485_30min_R1 2 KSNFSNSADDIK 12 1 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 KS(0.99)NFS(0.009)NSADDIK;KS(0.999)NFS(0.001)NSADDIK ; 165.16 1.39E-10 472630000 276210 167256 100439 429961 264430 236975 409361 338212 195825 564910 TRUE FALSE FALSE 337651.9616 186815.1343 137595.5657 453448.6807 238102.4207 249382.6446 321897.6782 255264.9767 235125.2813 424088.3334 0.796183094 0.440509959 0.32445025 1.069231679 0.561445345 0.588044105 0.759034505 0.60191464 0.554425252 1 18.69400527 -10.79225834 2.337850485 1.120721942 0.630304315 0.242248405 0.194783004 13901861.02 8606049.738 9537526.059 0.05138506 1.61E-11 10.79225834 -0.490417627 KS(ph)NFSNSADDIK ddPTM_HeLa_A486_30min_R1 3 KSNFSNSADDIK 12 1 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 KS(0.997)NFS(0.003)NSADDIK;KS(1)NFSNSADDIK;KS(1)NFSNSADDIK ;; 161.75 1.75E-10 420060000 649810 618710 283222 385820 606780 893100 1140630 1009960 511410 1195980 TRUE FALSE FALSE 604261.6746 569681.1663 392893.1433 898208.4583 530671.9944 782918.4024 855232.3096 780014.1553 555739.4306 896498.8235 0.674023946 0.635451103 0.438252827 1.001907013 0.591938305 0.87330667 0.953969249 0.870067127 0.619899788 1 19.77394216 -5.258892299 24.98791784 0.834272741 0.587863479 0.406059701 0.144724655 235.2808171 2308189.479 0.039146486 0.063951992 5.51E-06 5.258892299 -0.246409262 KS(ph)PAKSPNPS(ph)TPR ddPTM_HeLa_A486_30min_R1 1 KSPAKSPNPSTPR 13 2 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 2 0 KS(0.997)PAKS(0.225)PNPS(0.426)T(0.352)PR 55.189 0.027031 118570000 140960 165420 68975 117750 131050 229200 279530 263690 138930 303420 TRUE FALSE FALSE 131079.4319 152311.5168 95683.96721 274127.9508 114612.487 200923.6343 209588.6374 203653.5433 150972.5643 227441.6571 0.576321126 0.669672912 0.420696756 1.205267119 0.503920383 0.883407362 0.921505058 0.89541004 0.663785897 1 17.79513699 -5.229004294 24.99961703 0.851005574 0.566974541 0.370668865 0.185268292 744.7986512 574059.07 0.047727881 0.082659254 5.90E-06 5.229004294 -0.284031032 KS(ph)PAKSPNPST(ph)PR ddPTM_HeLa_A486_30min_R1 1 KSPAKSPNPSTPR 13 2 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 2 0 KS(0.999)PAKS(0.003)PNPS(0.211)T(0.786)PR 73.138 0.0075748 300150000 156180 137040 60489 109660 141400 148180 229990 206520 89804 238910 TRUE FALSE FALSE 145232.5885 126180.4513 83911.96075 255294.0219 123664.2935 129899.0582 172444.0694 159499.9043 97588.28303 179085.381 0.81096842 0.704582645 0.468558407 1.425543618 0.690532599 0.72534708 0.96291539 0.890636095 0.544926015 1 17.45028805 KS(ph)PAKSPNPSTPR ddPTM_HeLa_A485_30min_R1 4 KSPAKSPNPSTPR 13 2 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 KS(1)PAKSPNPSTPR;KS(0.996)PAKS(0.004)PNPSTPR;KS(0.999)PAKS(0.001)PNPSTPR;KS(1)PAKSPNPSTPR ;;; 141.86 5.09E-08 3168300000 1013610 845940 557365 1371810 1444320 1201890 1940840 1808670 890320 2127010 TRUE FALSE FALSE 1239084.048 944865.3243 763557.5074 1446748.507 1300518.429 1264819.102 1526163.679 1365090.847 1068999.058 1596785.552 0.77598651 0.59172963 0.478184128 0.906038075 0.814460294 0.792103298 0.955772475 0.854899298 0.669469395 1 20.60673914 -5.273458271 24.90075658 0.849811 0.612943039 0.504593367 0.109209918 568.3099406 1177424.25 0.030509915 0.045658726 5.33E-06 5.273458271 -0.236867961 KS(ph)PAKSPNPSTPR ddPTM_HeLa_A486_30min_R1 3 KSPAKSPNPSTPR 13 2 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 KS(0.999)PAKS(0.001)PNPSTPR;KS(0.998)PAKS(0.001)PNPSTPR;KS(0.995)PAKS(0.005)PNPSTPR ;; 166.92 4.45E-12 1846320000 1555670 1316630 633205 915310 1497500 1598380 2355240 2099350 966770 2402180 TRUE FALSE FALSE 1446625.566 1212295.444 878398.9338 2130887.937 1309669.586 1401188.127 1765934.041 1621373.833 1050570.402 1800658.492 0.803386968 0.673251174 0.487820949 1.183393712 0.727328137 0.778153177 0.980715693 0.900433836 0.583436785 1 20.78009316 -5.232081052 24.99913158 0.86862573 0.656662894 0.265699667 0.17020807 1021.793621 870074.0029 0.045283935 0.078419715 5.86E-06 5.232081052 -0.211962836 KS(ph)PEIHR ddPTM_HeLa_A485_30min_R1 4 KSPEIHR 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR ;;; 110.38 0.0017519 2638510000 2063180 972030 819130 4068260 1113370 1228710 1592750 1427570 1592880 4271260 TRUE FALSE FALSE 2522127.273 1085700.453 1122160.274 4290498.742 1002518.974 1293043.356 1252445.951 1077456.219 1912556.405 3206513.489 0.78656375 0.338592199 0.349962749 1.338057288 0.312650789 0.403255237 0.390594319 0.336021109 0.596459803 1 21.61257405 -8.033969698 22.31527453 1.00000001 0.526021433 0.176403189 0.30140506 2138.386325 1404742.882 0.293804674 0.07586004 9.25E-09 8.033969698 -0.473978576 KS(ph)PEIHR ddPTM_HeLa_A486_30min_R1 6 KSPEIHR 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR;KS(1)PEIHR ;;;;; 106.62 0.0019615 2409780000 1225212 1134611 1208470 1063711 838749 3537868 1761950 1381320 2183789 2064611 TRUE FALSE FALSE 1139330.966 1044700.292 1676421.948 2476372.965 733545.2794 3101401.817 1321091.474 1066823.59 2373081.589 1547618.967 0.736183124 0.675037147 1.083226546 1.600117999 0.473983128 2.003982816 0.853628381 0.689332202 1.533375875 1 20.56161888 -4.809723941 5.357457742 1.158180887 0.703757102 0.149047792 0.431423466 0.325567969 20.59880281 0.109062084 0.244127496 1.55E-05 4.809723941 -0.454423785 KS(ph)PEIHRR ddPTM_HeLa_A485_30min_R1 3 KSPEIHRR 8 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(1)PEIHRR;KS(1)PEIHRR;KS(1)PEIHRR ;; 59.542 0.015706 58841000 106922 41299 32190.7 123669 43837 106036 53158 54879 50263 98641 TRUE FALSE FALSE 130706.43 46128.5588 44099.3795 130424.7243 39472.43436 111587.881 41800.35904 41419.8392 60350.32306 74051.61405 1.765071993 0.622924421 0.595522192 1.761267813 0.533039487 1.506893299 0.564476002 0.559337426 0.814976471 1 16.17624356 -6.794912252 24.99645897 0.697975477 1.084860204 0.152148758 0.44694756 371.9098996 277727.0362 0.180120817 0.121445558 1.60E-07 6.794912252 0.386884728 KS(ph)PEIHRR ddPTM_HeLa_A486_30min_R1 2 KSPEIHRR 8 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(1)PEIHRR;KS(1)PEIHRR ; 50.284 0.024326 28159400 30096 31619 33170 20858.3 22611 77280 34290 37017 57347 53740 TRUE FALSE FALSE 27986.42582 29113.39529 46014.31232 48559.17652 19774.91754 67745.97933 25710.27932 28589.03718 62317.88413 40283.15421 0.694742663 0.72271886 1.142271831 1.205446234 0.490897943 1.681744656 0.638238982 0.709702051 1.546996142 1 15.29788903 -4.746338096 22.52866834 1.034711494 0.708729611 0.126748648 0.358044424 157.3399209 234710.8694 0.087480203 0.228733123 1.79E-05 4.746338096 -0.325981883 KS(ph)PESEILSLHLLVEELR ddPTM_HeLa_A485_30min_R1 2 KSPESEILSLHLLVEELR 18 1 A0A0A6YYJ5;O94854-2;O94854 A0A0A6YYJ5 MACF1;KIAA0754 Uncharacterized protein KIAA0754 1 0 KS(0.994)PES(0.006)EILSLHLLVEELR;KS(1)PESEILSLHLLVEELR ; 182.17 7.79E-18 35104000 40681 36947 21967.1 37523 34247 35634 50348 51908 32603 84363 TRUE FALSE FALSE 49730.3481 41267.63025 30093.64442 39572.78648 30837.24843 37499.74114 39590.73849 39177.48161 39146.12305 63332.85669 0.785221932 0.651599066 0.475166383 0.624838173 0.486907587 0.592105632 0.625121628 0.61859647 0.618101332 1 15.95066653 -9.248839006 0.920928406 1.009757359 0.599110262 0.673228561 0.081748622 8.481031486 5.471707701 0.39984844 0.026606545 5.64E-10 9.248839006 -0.410647097 KS(ph)PESEILSLHLLVEELR ddPTM_HeLa_A486_30min_R1 2 KSPESEILSLHLLVEELR 18 1 A0A0A6YYJ5;O94854-2;O94854 A0A0A6YYJ5 MACF1;KIAA0754 Uncharacterized protein KIAA0754 1 0 KS(0.993)PES(0.003)EILS(0.004)LHLLVEELR;KS(1)PESEILSLHLLVEELR ; 200.17 2.98E-25 39276000 44988 40202 26909.7 11276.3 51384 41328 47897 44871 52294 48446 TRUE FALSE FALSE 41834.57352 37016.24711 37329.85651 26251.79627 44938.93958 36229.37155 35912.664 34654.85283 56826.88603 36314.80627 1.151997706 1.01931556 1.027951415 0.722895121 1.237482564 0.997647386 0.988926217 0.9542899 1.564840677 1 15.14827026 -7.719910811 24.99999676 1.282423771 1.009857739 0.268065826 0.17831968 154.4219875 92961.37743 0.11279241 0.04263064 1.91E-08 7.719910811 -0.272566032 KS(ph)PGADVTCSLPR ddPTM_HeLa_A486_30min_R1 1 KSPGADVTCSLPR 13 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 KS(1)PGADVTCSLPR 114.52 0.00013089 260350000 42346 45311 25189 25013 52553 56003 74283 70021 41037 62703 TRUE FALSE FALSE 39377.76407 41720.39134 34942.85538 58231.52809 45961.3127 49093.91926 55696.60771 54078.74685 44594.1202 47001.76067 0.837793383 0.887634649 0.743437158 1.238922271 0.977863638 1.044512345 1.184989816 1.150568533 0.948775526 1 15.52042718 -5.251624696 24.99985691 1.083117949 0.829423016 0.608688719 0.093584213 456.4217224 1162590.165 0.024998615 0.042628797 5.60E-06 5.251624696 -0.253694933 KS(ph)PGVEIK ddPTM_HeLa_A485_30min_R1 3 KSPGVEIK 8 1 Q9Y597-3;Q9Y597-2;Q9Y597 Q9Y597-3 KCTD3 BTB/POZ domain-containing protein KCTD3 1 0 KS(1)PGVEIK;KS(1)PGVEIK;KS(1)PGVEIK ;; 93.839 0.0021794 1080240000 2242090 1593480 929830 3206240 2092690 2083470 3315720 3166160 1565720 4548380 TRUE FALSE FALSE 2740835.185 1779823.625 1273812.81 3381388.773 1884334.436 2192557.268 2607289.335 2389654.296 1879945.642 3414552.573 0.802692337 0.521246514 0.373054092 0.990287512 0.551853983 0.642121397 0.763581547 0.699844048 0.550568662 1 21.70326512 -10.82597744 2.36328772 1.134300007 0.653757035 0.286161789 0.163444359 11880649.89 6997233.452 9059517.651 0.041923305 1.49E-11 10.82597744 -0.480542972 KS(ph)PGVEIK ddPTM_HeLa_A486_30min_R1 4 KSPGVEIK 8 1 Q9Y597-3;Q9Y597-2;Q9Y597 Q9Y597-3 KCTD3 BTB/POZ domain-containing protein KCTD3 1 0 KS(1)PGVEIK;KS(1)PGVEIK;KS(1)PGVEIK;KS(1)PGVEIK ;;; 103.44 0.00096704 2445190000 5101170 5004400 1975470 2706880 4466190 6022540 7815120 7092120 3859790 7769090 TRUE FALSE FALSE 4743604.325 4607833.118 2740424.889 6301753.438 3905998.805 5279540.247 5859694.316 5477399.096 4194359.705 5823659.296 0.814540152 0.791226424 0.470567516 1.082095143 0.670712108 0.9065675 1.006187694 0.940542504 0.720227522 1 22.47349452 -5.269713005 24.99383365 0.895958624 0.702022865 0.302223214 0.146808919 799.952284 2416579.016 0.040626405 0.061397475 5.37E-06 5.269713005 -0.193935759 KS(ph)PHKDLGHR ddPTM_HeLa_A485_30min_R1 1 KSPHKDLGHR 10 2 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 KS(1)PHKDLGHR 68.034 0.0059192 31948000 31044 18322 17456 36535 18452 27358 22138 24369 22889 34398 TRUE FALSE FALSE 37949.6307 20464.59852 23913.7008 38530.81454 16614.85409 28790.42258 17408.03545 18392.46454 27482.61235 25823.21165 1.46959376 0.79248851 0.926054479 1.492100017 0.643407734 1.114904798 0.674123563 0.712245432 1.064260043 1 14.65638082 -5.783929159 24.99905981 0.856405009 1.125661315 0.249011879 0.251681564 370.6682495 412023.2435 0.076667456 0.08699482 1.64E-06 5.783929159 0.269256306 KS(ph)PLPR ddPTM_HeLa_A485_30min_R1 2 KSPLPR 6 1 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9;Q9H6P5-2 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 KS(1)PLPR;KS(1)PLPR ; 63.565 0.021508 370240000 213850 198790 169517 279820 311530 246140 308200 277220 216976 375990 TRUE FALSE FALSE 261420.1947 222036.7613 232228.3925 295105.8581 280512.9794 259027.5098 242350.5522 209231.3603 260521.093 282262.6126 0.926159481 0.78663185 0.822738762 1.045501051 0.993801399 0.917682677 0.85859955 0.741264875 0.922974143 1 18.10667852 -3.996612024 0.00647397 1.759529165 8.44E-07 0.036517729 0.091661611 107325.8927 100.2244663 12936.29743 14329.66596 0.000100783 3.996612024 -1.759528321 KS(ph)PLPR ddPTM_HeLa_A486_30min_R1 2 KSPLPR 6 1 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9;Q9H6P5-2 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 KS(1)PLPR;KS(1)PLPR ; 65.038 0.020112 348610000 210783 245160 152428 103666 246177 251611 285905 288536 191433 265002 TRUE FALSE FALSE 196008.2002 225732.6287 211452.2038 241339.687 215299.1852 220569.793 214368.545 222842.6515 208026.5666 198643.7743 0.986732158 1.136369008 1.06447939 1.214937079 1.083845622 1.110378585 1.079160652 1.121820466 1.047234263 1 17.59982405 -7.977054207 3.991534193 1.000286051 1.102543462 0.2545429 0.054799658 0.233990297 9.105619102 0.050291546 0.013231507 1.05E-08 7.977054207 0.102257411 KS(ph)PLSSILFSALDSDTR ddPTM_HeLa_A485_30min_R1 2 KSPLSSILFSALDSDTR 17 1 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A0G2JQF4;A0A1W2PRR3;I3L233;A0A1W2PPV8 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 KS(1)PLSSILFSALDSDTR;KS(0.999)PLS(0.001)SILFSALDSDTR ; 144.22 4.65E-08 213605000 84804 72557 65933 100135 95252 77458 92326 79210 78588 145366 TRUE FALSE FALSE 103668.3572 81041.90999 90324.3604 105605.1215 85768.37643 81513.58111 72599.79587 59783.6233 94359.89075 109128.9315 0.949962176 0.742625341 0.827684824 0.967709663 0.785936188 0.746947487 0.665266258 0.547825609 0.864664296 1 16.7356741 -5.993150081 24.52635228 0.734449236 0.861743897 0.11517368 0.127123758 236.7431114 847656.3705 0.038695345 0.043770946 1.02E-06 5.993150081 0.127294661 KS(ph)PLSSILFSALDSDTR ddPTM_HeLa_A486_30min_R1 2 KSPLSSILFSALDSDTR 17 1 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A0G2JQF4;A0A1W2PRR3;I3L233;A0A1W2PPV8 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 KS(0.999)PLS(0.001)SILFSALDSDTR;KS(0.999)PLS(0.001)SILFSALDSDTR ; 234.64 2.04E-42 334080000 242020 247640 150716 97225 206736 245690 255650 234830 230500 255010 TRUE FALSE FALSE 225055.6478 228016.1045 209077.2715 226344.7135 180805.2431 215379.2658 191683.666 181364.3353 250479.9256 191153.8362 1.177353551 1.192840851 1.093764455 1.184097155 0.945862488 1.126732636 1.002771746 0.948787317 1.310357828 1 17.54437463 -5.723930757 24.99999673 1.054091199 1.159341024 0.203838884 0.10279648 274.6736882 183072.4416 0.029187971 0.03768062 1.89E-06 5.723930757 0.105249826 KS(ph)PMMPENAENEGDALLQFTAEFSSR ddPTM_HeLa_A485_30min_R1 1 KSPMMPENAENEGDALLQFTAEFSSR 26 1 B3KT28;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 0 KS(1)PMMPENAENEGDALLQFTAEFSSR 77.31 0.0049353 27600000 16017 13091 14482 22472 19037 20013 23972 22590 17059 27426 TRUE FALSE FALSE 19579.92639 14621.87857 19839.49445 23699.58846 17141.60944 21060.84973 18850.18637 17049.76708 20482.58483 20589.20294 0.9509803 0.710172153 0.963587299 1.151068768 0.832553328 1.022907482 0.915537451 0.828092624 0.994821649 1 14.32960036 -4.813068965 24.9868771 0.959852522 0.830575734 0.207121416 0.103880737 136.176222 65903.84504 0.026689833 0.055559437 1.54E-05 4.813068965 -0.129276789 KS(ph)PPKADEKER ddPTM_HeLa_A485_30min_R1 2 KSPPKADEKER 11 3 E9PG73;Q13427;C9JM79;Q13427-2 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 KS(1)PPKADEKER;KS(1)PPKADEKER ; 103.88 0.00082391 1192150000 878100 471390 287410 2046320 897500 940750 2138220 2167550 647830 2957300 TRUE FALSE FALSE 1073430.316 526514.96 393734.9191 2158105.28 808141.7487 990006.2153 1681371.829 1635954.964 777843.5388 2220099.535 0.483505491 0.237158268 0.17735012 0.972075912 0.364011494 0.445928752 0.757340742 0.736883612 0.350364264 1 21.08219293 -14 0.078083327 2.623547096 8.12E-13 0.322034334 0.230686376 316.1135645 1.750137097 89.20544818 8.781312207 1.00E-14 14 -2.623547096 KS(ph)PPKADEKER ddPTM_HeLa_A486_30min_R1 3 KSPPKADEKER 11 3 E9PG73;Q13427;C9JM79;Q13427-2 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 KS(1)PPKADEKER;KS(1)PPKADEKER;KS(1)PPKADEKER ;; 86.214 0.003221 596880000 437890 245854 120566 544310 281131 623190 897370 664010 257410 1114020 TRUE FALSE FALSE 407196.1723 226371.6337 167252.3841 1267181.188 245868.9285 546307.1539 672838.5346 512829.4182 279722.5061 835062.1409 0.487623797 0.271083579 0.200287351 1.51746933 0.294431895 0.654211378 0.805734689 0.614121265 0.334972085 1 19.67152403 KS(ph)PPPAKDEAR ddPTM_HeLa_A485_30min_R1 1 KSPPPAKDEAR 11 2 Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 Q8IXJ6-5 SIRT2 NAD-dependent protein deacetylase sirtuin-2 1 0 KS(1)PPPAKDEAR 82.651 0.0024399 276150000 265440 187400 92637 413650 183920 208550 269200 247010 179770 420790 TRUE FALSE FALSE 324486.2122 209314.7998 126907.2812 436246.6521 165608.279 219469.3555 211683.2208 186430.4102 215848.1901 315894.7971 1.027197077 0.662609203 0.401739068 1.380987139 0.524251366 0.694754575 0.670106703 0.590166131 0.683291374 1 18.26908465 KS(ph)PPPSFCLEYTSAIFEFK ddPTM_HeLa_A486_30min_R1 1 KSPPPSFCLEYTSAIFEFK 19 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 KS(0.953)PPPS(0.047)FCLEYTSAIFEFK 74.579 0.00066826 0 59172 58222 25935 49698 48590 76247 91335 81926 52611 85178 TRUE FALSE FALSE 55024.34836 53608.27668 35977.72656 115699.4556 42495.38912 66840.42036 68482.01696 63273.23823 57171.36384 63848.87438 0.861790421 0.83961193 0.56348255 1.812082934 0.665562072 1.046853543 1.072564201 0.990984396 0.895416942 1 15.96237357 KS(ph)PRPAGPQLFLPDPDPQR ddPTM_HeLa_A485_30min_R1 1 KSPRPAGPQLFLPDPDPQR 19 2 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 KS(1)PRPAGPQLFLPDPDPQR 86.006 0.00034367 2826500000 863120 1019000 874560 1309900 1335300 1236400 1543300 1382100 974540 1669100 TRUE FALSE FALSE 1055118.066 1138163.186 1198096.137 1381456.52 1202352.843 1301135.992 1213561.347 1043137.808 1170121.239 1253024.088 0.842057289 0.908333046 0.956163692 1.102497976 0.959560838 1.038396632 0.968506 0.832496213 0.933837785 1 20.25698272 -4.542861766 2.55960836 0.974248682 0.844602015 0.291173537 0.065929491 0.45050115 5.302464644 0.019228495 0.09601396 2.87E-05 4.542861766 -0.129646667 KS(ph)PRPAGPQLFLPDPDPQR ddPTM_HeLa_A486_30min_R1 2 KSPRPAGPQLFLPDPDPQR 19 2 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 KS(1)PRPAGPQLFLPDPDPQR;KS(1)PRPAGPQLFLPDPDPQR ; 130.6 1.68E-06 5563200000 2207650 2557530 1506220 1110990 2504170 2557700 3030300 2895590 2201350 3366700 TRUE FALSE FALSE 2052905.135 2354862.008 2089468.722 2586440.866 2190073.648 2242156.979 2272086.889 2236327.367 2392164.79 2523656.406 0.813464594 0.933115143 0.827952932 1.024878371 0.86781768 0.888455724 0.900315464 0.886145737 0.947896387 1 21.26708407 -14 0.148268343 1.356660367 0.867971692 0.270106044 0.055508784 194.4833515 1.720032303 20.40285414 0.281278662 1.00E-14 14 -0.488688675 KS(ph)PS(ph)PAGGGSS(ph)PYSR ddPTM_HeLa_A486_30min_R1 1 KSPSPAGGGSSPYSR 15 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 KS(1)PS(1)PAGGGS(0.058)S(0.534)PYS(0.407)R 133.3 1.20E-05 193970000 237870 282590 131710 202530 240060 333480 420070 371330 235270 460640 TRUE FALSE FALSE 221196.5414 260196.5392 182711.6393 471500.0753 209949.4363 292338.6282 314964.043 286786.2651 255663.393 345292.7457 0.640605817 0.753553448 0.529149951 1.365508199 0.608033151 0.846639936 0.912165248 0.830559775 0.740425034 1 18.3974605 KS(ph)PSAGDVHILTGFAKPMDIYCHR ddPTM_HeLa_A486_30min_R1 1 KSPSAGDVHILTGFAKPMDIYCHR 24 2 A0A3B3ITL0;A0A3B3IRJ9;Q9Y2H2-4;Q9Y2H2 A0A3B3ITL0 INPP5F Phosphatidylinositide phosphatase SAC2 1 0 KS(0.5)PS(0.5)AGDVHILTGFAKPMDIYCHR 93.505 0.00085143 287810000 251550 197120 117580 91073 226670 204600 313550 289610 145090 309770 TRUE FALSE FALSE 233917.644 181499.4933 163110.1249 212022.5466 198238.935 179358.5322 235096.4736 223672.1251 157666.518 232201.5757 1.007390425 0.78164626 0.702450551 0.913096933 0.85373639 0.772425991 1.012467176 0.963267043 0.679007098 1 17.82501824 -6.741085731 24.99873675 0.91062434 0.833780465 0.090172801 0.116334631 623.9264153 766318.1402 0.044355714 0.03431547 1.82E-07 6.741085731 -0.076843875 KS(ph)PSDTEGLVK ddPTM_HeLa_A485_30min_R1 2 KSPSDTEGLVK 11 1 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 0 KS(0.999)PS(0.001)DTEGLVK;KS(0.997)PS(0.003)DTEGLVK ; 114.69 0.00022561 1144510000 1082830 764410 576030 1563710 791240 897020 1383100 1266270 705720 2891400 TRUE FALSE FALSE 1323701.798 853801.1 789127.4676 1649131.518 712461.3674 943986.5801 1087589.386 955715.2971 847351.5308 2170627.192 0.609824572 0.393343041 0.363548135 0.759748852 0.328228343 0.434891161 0.501048448 0.440294538 0.390371748 1 21.04968053 -10.30761357 3.63874154 1.001609637 0.467205854 0.628044437 0.1225782 74508765.39 109290865.1 1285689.659 0.031584088 4.92E-11 10.30761357 -0.534403783 KS(ph)PSPAGGGS(ph)S(ph)PYSR ddPTM_HeLa_A486_30min_R1 1 KSPSPAGGGSSPYSR 15 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 KS(0.952)PS(0.637)PAGGGS(0.703)S(0.64)PY(0.014)S(0.055)R 73.208 0.0071472 167060000 174830 215550 94910 133450 190960 237590 305210 267210 153840 318510 TRUE FALSE FALSE 162575.3198 198469.033 131661.6938 310678.3442 167008.0162 208278.5614 228843.2298 206372.1162 167174.9751 238753.0228 0.680935127 0.831273383 0.55145561 1.301254076 0.699501159 0.872359893 0.958493539 0.864374883 0.700200454 1 17.86515947 KS(ph)PSSDSWTCADTSTER ddPTM_HeLa_A485_30min_R1 3 KSPSSDSWTCADTSTER 17 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 KS(0.988)PS(0.009)S(0.002)DSWTCADTSTER;KS(0.752)PS(0.21)S(0.036)DS(0.002)WTCADTSTER;KS(0.953)PS(0.04)S(0.008)DSWTCADTSTER ;; 130.19 7.74E-06 1823080000 886659 724545 572763 1169917 1157020 645251 1184430 898572 795028 1933080 TRUE FALSE FALSE 1083893.236 809274.235 784651.8684 1233826.603 1041823.026 679035.3446 931366.8546 678195.8081 954582.8272 1451198.732 0.746895109 0.557659139 0.540692223 0.850212019 0.717905138 0.467913408 0.641791392 0.467334896 0.657789182 1 20.46881367 -10.87496703 2.212053855 1.199303221 0.623178972 0.476667134 0.116986621 5097491.837 2518021.633 5319424.62 0.031566667 1.33E-11 10.87496703 -0.576124249 KS(ph)PSSDSWTCADTSTER ddPTM_HeLa_A486_30min_R1 4 KSPSSDSWTCADTSTER 17 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 KS(0.902)PS(0.093)S(0.005)DSWTCADTSTER;KS(0.724)PS(0.229)S(0.045)DS(0.002)WTCADTSTER;KS(0.96)PS(0.033)S(0.007)DSWTCADTSTER;KS(0.796)PS(0.173)S(0.03)DSWTCADTSTER ;;; 159.67 7.67E-10 2417350000 1239870 1199570 717930 634280 1155790 1388990 1595490 1526530 936710 1687360 TRUE FALSE FALSE 1152961.516 1104511.704 995931.7228 1476635.895 1010820.041 1217630.536 1196281.527 1178972.443 1017904.777 1264834.073 0.911551594 0.873246324 0.787401086 1.167454235 0.799172051 0.962680056 0.945801155 0.932116289 0.804773368 1 20.27051671 KS(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_HeLa_A485_30min_R1 1 KSPTMEQAVQTASAHLPAPAAVGR 24 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 KS(0.838)PT(0.16)MEQAVQT(0.002)ASAHLPAPAAVGR 71.085 0.0051893 105010000 79308 87616 74917 63084 156060 123100 171310 237380 123650 112780 TRUE FALSE FALSE 96949.79099 97861.92904 102631.9159 66530.11918 140522.1184 129545.3257 134708.219 179162.1828 148465.4208 84666.02156 1.145084996 1.155858362 1.212197219 0.785794796 1.659722706 1.53007456 1.59105408 2.116104897 1.753541953 1 16.36949548 -5.78229426 24.849446 1.65943663 1.090347322 0.458231667 0.280812546 187.3913043 223283.3052 0.086190142 0.097833693 1.65E-06 5.78229426 -0.569089309 KS(ph)PVGKSPPSTGSTYGSSQK ddPTM_HeLa_A486_30min_R1 1 KSPVGKSPPSTGSTYGSSQK 20 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.433)PVGKS(0.433)PPS(0.054)T(0.077)GS(0.003)TYGSSQK 96.019 0.00016692 1225000000 885200 807960 348960 345230 704290 898660 1097000 932020 565030 1217200 TRUE FALSE FALSE 823152.0512 743934.3071 484086.6575 803712.887 615951.381 787792.4661 822518.9971 719819.3919 614007.2553 912405.1974 0.90217817 0.815355183 0.530561048 0.880872763 0.675085349 0.863423913 0.90148434 0.788925133 0.672954579 1 19.79931514 -6.292330769 24.60709145 0.835673337 0.757719212 0.098653151 0.125918034 1578.917023 1257709.316 0.044296065 0.039069886 5.10E-07 6.292330769 -0.077954125 KS(ph)PVGKSPPSTGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_A486_30min_R1 1 KSPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 33 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.432)PVGKS(0.432)PPS(0.034)T(0.034)GS(0.034)T(0.034)Y(0.001)GSSQKEESAASGGAAYTK 75.224 0.00093025 222650000 249070 198130 74974 140460 217750 293770 392510 374260 163280 334860 TRUE FALSE FALSE 231611.4792 182429.4572 104005.9407 326997.9785 190437.7646 257527.6442 294299.8465 289049.168 177433.2419 251008.8764 0.922722266 0.726784884 0.414351644 1.30273472 0.758689363 1.025970268 1.172467885 1.151549587 0.706880348 1 17.93737886 -5.260809586 24.99998087 1.019314728 0.691836142 0.351672532 0.20463494 63.93155182 2537745.271 0.055887345 0.089918931 5.49E-06 5.260809586 -0.327478587 KS(ph)PVGMLDLSSWSSPEVLR ddPTM_HeLa_A485_30min_R1 2 KSPVGMLDLSSWSSPEVLR 19 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 KS(1)PVGMLDLSSWSSPEVLR;KS(1)PVGMLDLSSWSSPEVLR ; 150.22 8.78E-09 323630000 242200 205051 186416 344120 288120 211550 305200 234780 218980 466540 TRUE FALSE FALSE 296076.5544 229029.9307 255379.0358 362918.4042 259433.7611 222626.4309 239991.5267 177199.8369 262927.2774 350240.164 0.845352946 0.65392252 0.729154055 1.036198705 0.740731041 0.635639352 0.68521989 0.505938082 0.750705671 1 18.41798501 -5.996829906 24.99986161 0.68333539 0.809618169 0.073152623 0.148961344 201.3133146 1587559.47 0.045736646 0.051602799 1.01E-06 5.996829906 0.126282779 KS(ph)PVGMLDLSSWSSPEVLR ddPTM_HeLa_A486_30min_R1 2 KSPVGMLDLSSWSSPEVLR 19 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 KS(1)PVGMLDLSSWSSPEVLR;KS(1)PVGMLDLSSWSSPEVLR ; 158.29 1.48E-09 398400000 276300 281510 171742 235400 250390 348930 354550 319850 239401 436390 TRUE FALSE FALSE 256932.7968 259202.1224 238245.1018 548023.0965 218983.7514 305882.5643 265837.84 247027.1373 260152.4714 327115.1036 0.78545073 0.792388121 0.728321925 1.675321899 0.669439439 0.935091535 0.812673695 0.755168852 0.795293365 1 18.31943885 KS(ph)PYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK ddPTM_HeLa_A485_30min_R1 1 KSPYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK 33 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 KS(0.999)PY(0.001)GPPPTGLFDDDDGDDDDDFFSAPHSKPSK 233.08 1.26E-40 95627000 72543 54469 32060 96936 90584 63012 105240 101540 47137 123950 TRUE FALSE FALSE 88679.94008 60838.67573 43920.32813 102231.3682 81565.1389 66311.21088 82754.61427 76637.15579 56596.96353 93051.54613 0.953019523 0.653816925 0.471999982 1.098653085 0.876558663 0.712628792 0.889341636 0.823598951 0.608232382 1 16.5057425 -10.92325871 2.863226724 1.12785022 0.787945525 0.11962422 0.172908858 48242845.55 32439565.26 41221531.47 0.044808965 1.19E-11 10.92325871 -0.339904695 KS(ph)PYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK ddPTM_HeLa_A486_30min_R1 1 KSPYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK 33 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 KS(1)PYGPPPTGLFDDDDGDDDDDFFSAPHSKPSK 231.5 3.55E-40 86077000 197600 156560 76074 76464 166210 169500 231130 194280 109480 213490 TRUE FALSE FALSE 183749.2604 144153.6154 105531.8901 178012.0563 145362.392 148588.8133 173298.8294 150046.6851 118969.8145 160030.7144 1.148212461 0.900787177 0.659447722 1.112361817 0.90834058 0.928501844 1.082909803 0.937611793 0.743418631 1 17.2879893 -11.60095293 2.128246076 2.23355327 0.935139322 0.017110257 0.146066832 7710250.258 719381.0703 46691516.37 0.037216925 2.51E-12 11.60095293 -1.298413949 KS(ph)QENLGNPSK ddPTM_HeLa_A486_30min_R1 2 KSQENLGNPSK 11 1 C9J1M4;C9J8V3;C9JJN3;C9JR71;C9JTF7;C9JP72;C9J3Y6;C9IYB9;C9K0C5;B4DGG1;Q9H0X4-2;Q9H0X4 C9J1M4 ITFG3 Protein ITFG3 1 0 KS(1)QENLGNPSK;KS(1)QENLGNPSK ; 118.21 0.00024811 347210000 510400 483700 199703 176240 367050 638670 546790 434100 528790 1065910 TRUE FALSE FALSE 474623.5957 445369.8504 277033.3498 410295.6267 321011.1664 559877.3889 409977.3586 335264.9063 574625.943 798999.1981 0.594022618 0.557409634 0.346725442 0.513511938 0.401766569 0.700723343 0.513113605 0.419606061 0.719182127 1 19.60783453 -8.026597976 4.050652559 0.999449357 0.506882306 0.719876004 0.096399694 0.104071538 5.047024264 0.093816056 0.024642624 9.41E-09 8.026597976 -0.492567051 KS(ph)QS(ph)PSPK ddPTM_HeLa_A486_30min_R1 1 KSQSPSPK 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 KS(0.684)QS(0.79)PS(0.526)PK 41.54 0.033071 269940000 93093 160630 244900 13024 243930 63711 46888 81494 158340 30235 TRUE FALSE FALSE 86567.66143 147901.0938 339731.8386 30320.5302 213334.0248 55850.98459 35156.12647 62939.5952 172065.0387 22663.9592 3.819617775 6.525827746 14.98995986 1.33783025 9.412919558 2.46430838 1.551190864 2.777078561 7.59201149 1 14.46811229 -6.274664161 24.60128239 3.092627082 7.28400465 0.235115972 3.732850911 978.4088355 1820070.725 1.300313397 1.153665794 5.31E-07 6.274664161 4.191377568 KS(ph)REDLSAQPVQTK ddPTM_HeLa_A485_30min_R1 1 KSREDLSAQPVQTK 14 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 KS(0.5)REDLS(0.5)AQPVQTK 57.52 0.015944 214100000 185300 347600 397930 53297 335040 260460 174260 229740 342130 76227 TRUE FALSE FALSE 226519.3457 388248.7963 545140.8662 56208.48015 301682.2412 274097.2829 137027.9274 173395.9048 410792.3528 57225.01175 3.958397539 6.784599677 9.526269188 0.982236236 5.271859838 4.789816104 2.394546077 3.030071982 7.178545538 1 15.80435823 -5.262171528 24.99997321 3.684480116 6.759239758 0.312041176 2.192090154 83.39048827 2847494.576 0.597649106 0.949163218 5.47E-06 5.262171528 3.074759641 KS(ph)RS(ph)PVDLR ddPTM_HeLa_A486_30min_R1 1 KSRSPVDLR 9 2 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 KS(1)RS(1)PVDLR 58.674 0.01325 0 342900 353710 199650 215260 407380 459070 565140 559360 307040 592420 TRUE FALSE FALSE 318864.4807 325680.7314 276959.8268 501136.1586 356282.6017 402434.6109 423735.9946 432005.9387 333654.4744 444074.176 0.718043286 0.733392638 0.6236792 1.128496512 0.802304257 0.906232861 0.954200936 0.972823826 0.751348519 1 18.76044115 -5.238507915 24.99448793 0.924240961 0.695873786 0.537642747 0.10144632 619.8956934 675663.5837 0.026298844 0.045514885 5.77E-06 5.238507915 -0.228367175 KS(ph)SFNVSDVARPEAAGSPPEEGGCTEGTPAK ddPTM_HeLa_A485_30min_R1 1 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAK 31 2 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 KS(0.452)S(0.452)FNVS(0.095)DVARPEAAGSPPEEGGCTEGTPAK 103.21 6.58E-05 1099200000 291520 199560 124480 379100 278740 204420 337370 264460 219100 531310 TRUE FALSE FALSE 356367.6183 222896.8061 170530.332 399809.2731 250987.6669 215123.1151 265288.1434 199600.7703 263071.3603 398864.195 0.893456025 0.558828817 0.427539835 1.002369423 0.629255947 0.539339248 0.665108944 0.500422883 0.659551205 1 18.6055381 -10.89280381 4.129682364 1.127880567 0.645602414 0.280459573 0.166435061 0.10639656 0.002761786 0.087496471 0.038588504 1.28E-11 10.89280381 -0.482278153 KS(ph)SFNVSDVARPEAAGSPPEEGGCTEGTPAK ddPTM_HeLa_A486_30min_R1 2 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAK 31 2 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 KS(0.464)S(0.464)FNVS(0.072)DVARPEAAGSPPEEGGCTEGTPAK;KS(0.458)S(0.458)FNVS(0.084)DVARPEAAGSPPEEGGCTEGTPAK ; 205.84 1.58E-29 2785400000 750200 899870 378120 337290 687060 1034710 1128880 1052440 720660 1116620 TRUE FALSE FALSE 697614.854 828561.0239 524538.1904 785228.1657 600882.5282 907058.0004 846422.2839 812822.3866 783127.389 837011.084 0.833459517 0.989904482 0.626680101 0.938133533 0.717890766 1.083686964 1.011243818 0.971101103 0.935623678 1 19.6748872 -6.26627306 24.99715127 0.999206974 0.826273518 0.437290811 0.101508091 409.0371321 2115309.532 0.034024834 0.030951206 5.42E-07 6.26627306 -0.172933457 KS(ph)SFNVSDVARPEAAGSPPEEGGCTEGTPAKDHR ddPTM_HeLa_A485_30min_R1 1 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAKDHR 34 3 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 KS(0.5)S(0.5)FNVSDVARPEAAGSPPEEGGCTEGTPAKDHR 242.85 6.28E-51 1814400000 378900 428240 257450 318950 575190 561220 820290 1004300 364940 537880 TRUE FALSE FALSE 463184.9978 478318.9428 352691.4684 336373.4309 517922.064 590604.6114 645028.3403 757993.8503 438180.1106 403796.4149 1.147075558 1.184554704 0.87343883 0.833027284 1.282631655 1.462629656 1.597409775 1.877168351 1.085151067 1 18.62326858 -5.979999354 4.425232786 1.464786513 1.012862901 0.336384158 0.254766314 0.20538813 9.776124063 0.082432302 0.090747485 1.05E-06 5.979999354 -0.451923612 KS(ph)SFNVSDVARPEAAGSPPEEGGCTEGTPAKDHR ddPTM_HeLa_A486_30min_R1 2 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAKDHR 34 3 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 KS(0.488)S(0.488)FNVS(0.024)DVARPEAAGSPPEEGGCTEGTPAKDHR;KS(0.499)S(0.499)FNVS(0.002)DVARPEAAGSPPEEGGCTEGTPAKDHR ; 112.62 6.49E-05 1948450000 496950 427070 200885 205376 517720 463590 625590 682050 303050 612160 TRUE FALSE FALSE 462116.3713 393227.4178 278673.0519 478125.7071 452782.7301 406396.9792 469060.7652 526762.104 329318.618 458871.1515 1.007072181 0.856945172 0.607301311 1.041960702 0.986731741 0.885645083 1.022205828 1.147952104 0.717671218 1 18.80772958 KS(ph)SGTGTEPVAK ddPTM_HeLa_A485_30min_R1 1 KSSGTGTEPVAK 12 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9;A0A0U1RR74 Q6ULP2-7 AFTPH Aftiphilin 1 0 KS(0.62)S(0.371)GT(0.009)GTEPVAK 115.82 0.00015191 157070000 163970 165830 107980 248690 216630 206230 314320 361400 162400 363150 TRUE FALSE FALSE 200444.5608 185222.376 147926.2954 262275.305 195061.5566 217027.8839 247162.9642 272766.0833 194992.1904 272623.3883 0.735243451 0.679407505 0.542603099 0.96204257 0.715498248 0.796072139 0.906609539 1.000523415 0.715243808 1 18.05654981 -5.907602396 0.55202413 0.9246987 0.646618088 0.351464845 0.118597289 1.177689233 0.754369581 0.093588976 0.163495203 1.24E-06 5.907602396 -0.278080612 KS(ph)SISSISGRDDLMDYHR ddPTM_HeLa_A485_30min_R1 2 KSSISSISGRDDLMDYHR 18 2 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KS(0.582)S(0.415)IS(0.002)S(0.001)ISGRDDLMDYHR;KS(0.498)S(0.498)IS(0.003)S(0.001)IS(0.001)GRDDLMDYHR ; 92.886 0.00028774 353430000 169143 189742 175257 179555 293110 230450 303290 295740 187127 233630 TRUE FALSE FALSE 206768.2768 211930.6764 240091.8574 189363.635 263926.9392 242516.0057 238489.6138 223209.3013 224681.6725 175390.3406 1.178903445 1.208337219 1.368900114 1.079669692 1.504797461 1.382721561 1.359764814 1.272643068 1.281037893 1 17.42020977 -8.581772493 1.826805104 1.000011196 1.298926508 0.374234382 0.113711165 6.709403606 19.71977603 0.111137512 0.031073569 2.62E-09 8.581772493 0.298915312 KS(ph)SISSISGRDDLMDYHR ddPTM_HeLa_A486_30min_R1 1 KSSISSISGRDDLMDYHR 18 2 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KS(0.49)S(0.49)IS(0.017)S(0.003)IS(0.001)GRDDLMDYHR 72.805 0.0025545 143710000 104380 83004 72831 28122 110470 90641 124510 110310 74019 101190 TRUE FALSE FALSE 97063.50102 76426.46074 101033.1137 65469.43721 96613.82251 79458.63499 93356.28107 85194.82105 80435.02652 75851.36536 1.279653973 1.007581872 1.331988069 0.863127999 1.273725556 1.047557082 1.230779177 1.123181114 1.060429514 1 16.21088753 -14 0.171841896 0.464155069 1.164718999 0.09831412 0.136991011 337.2965473 3.192744085 61.30965056 0.445568024 1.00E-14 14 0.700563931 KS(ph)SLDSNSSEMAIMMGADAK ddPTM_HeLa_A486_30min_R1 1 KSSLDSNSSEMAIMMGADAK 20 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 KS(0.286)S(0.286)LDS(0.109)NS(0.159)S(0.159)EMAIMMGADAK 133.15 2.03E-07 68247000 112500 108620 59087 61478 118420 189050 200170 228540 97138 178430 TRUE FALSE FALSE 104614.331 100012.5556 81967.0688 143123.8909 103566.6594 165726.9331 150085.3488 176506.431 105558.0001 133749.9666 0.782163417 0.747757612 0.612838051 1.070085433 0.774330357 1.239080183 1.122133729 1.31967458 0.789218889 1 17.02917901 -5.695549668 1.322605211 1.103590661 0.725751924 0.403857414 0.173689539 0.395563044 1.444575131 0.06458063 0.097839036 2.02E-06 5.695549668 -0.377838737 KS(ph)SPEMEDAR ddPTM_HeLa_A485_30min_R1 2 KSSPEMEDAR 10 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 KS(0.5)S(0.5)PEMEDAR;KS(0.641)S(0.359)PEMEDAR ; 127.79 5.72E-05 2357200000 2754000 2716300 2196900 3590200 3646600 3176600 4668200 4623300 2556800 4753800 TRUE FALSE FALSE 3366617.799 3033947.656 3009624.731 3786323.535 3283531.7 3342921.864 3670800.934 3489428.426 3069926.308 3568765.147 0.9433565 0.850139343 0.843323841 1.060961811 0.92007503 0.936716687 1.028591343 0.977769139 0.860220883 1 21.76699353 -5.233428792 24.97330644 0.967339888 0.876059834 0.330115755 0.05883099 839.9449479 748865.7462 0.015776716 0.027318925 5.84E-06 5.233428792 -0.091280054 KS(ph)SPEMEDAR ddPTM_HeLa_A486_30min_R1 1 KSSPEMEDAR 10 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 KS(0.5)S(0.5)PEMEDAR 88.092 0.0020839 1178200000 1157000 1093100 678210 504290 1153700 1239600 1525100 1447500 967480 1466800 TRUE FALSE FALSE 1075900.275 1006478.775 940831.0751 1174012.605 1008992.188 1086670.755 1143503.849 1117935.849 1051341.945 1099503.733 0.978532626 0.915393686 0.855687022 1.067765912 0.917679639 0.988328391 1.04001816 1.016764032 0.956196795 1 20.06842107 -5.256989646 24.99587949 0.996793708 0.916423374 0.3793475 0.047792089 404.9944637 2275002.143 0.013097085 0.021720385 5.53E-06 5.256989646 -0.080370335 KS(ph)SPFKDLMTVPESR ddPTM_HeLa_A485_30min_R1 1 KSSPFKDLMTVPESR 15 2 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 KS(0.615)S(0.385)PFKDLMTVPESR 99.413 0.00028257 350510000 324320 278910 168930 454550 398630 378350 585750 648410 263130 685390 TRUE FALSE FALSE 396463.8651 311526.0983 231424.2368 479380.9155 358940.9975 398159.821 460599.7274 489386.4308 315937.7774 514534.8867 0.770528637 0.605451849 0.449773655 0.931678158 0.697602839 0.773824732 0.895176866 0.951123905 0.614025959 1 18.97290937 -5.270488189 24.98599079 0.829501071 0.608271423 0.382651819 0.133040941 668.1708076 1844982.966 0.036763717 0.055429521 5.36E-06 5.270488189 -0.221229648 KS(ph)SPFKDLMTVPESR ddPTM_HeLa_A486_30min_R1 1 KSSPFKDLMTVPESR 15 2 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 KS(0.63)S(0.37)PFKDLMTVPESR 166.91 2.14E-12 362150000 244960 194190 86644 117160 180700 249350 323730 261540 167130 373960 TRUE FALSE FALSE 227789.569 178801.6772 120194.8772 272754.4009 158034.921 218587.7322 242729.3299 201993.0514 181616.963 280317.9819 0.812611333 0.637853041 0.428780474 0.973017853 0.563770187 0.77978491 0.865907097 0.720585422 0.647896227 1 18.09670477 -14 0.208622355 2.340280228 0.672926847 0.244491986 0.148458304 209.0411633 2.082213408 117.4238485 0.319350867 1.00E-14 14 -1.667353381 KS(ph)SPPASSPQPEAPTSSWR ddPTM_HeLa_A485_30min_R1 2 KSSPPASSPQPEAPTSSWR 19 1 P43250-2 P43250-2 1 0 KS(0.499)S(0.499)PPAS(0.002)SPQPEAPTSSWR;KS(0.729)S(0.265)PPAS(0.003)S(0.002)PQPEAPTSSWR ; 88.573 0.00039521 434230000 191486 146749 137971 311350 217168 226020 341870 314410 183140 443390 TRUE FALSE FALSE 234081.4001 163910.019 189012.2144 328358.2621 195545.9914 237854.0577 268826.6817 237300.4545 219894.5181 332861.033 0.703240623 0.492427778 0.567841218 0.98647252 0.587470362 0.714574655 0.807624369 0.712911489 0.660619587 1 18.34456046 -14 0.134614793 1.991513496 0.578766432 0.346178456 0.128707893 168.6438194 1.41142696 45.42432781 0.911069971 1.00E-14 14 -1.412747064 KS(ph)SPPASSPQPEAPTSSWR ddPTM_HeLa_A486_30min_R1 1 KSSPPASSPQPEAPTSSWR 19 1 P43250-2 P43250-2 1 0 KS(0.497)S(0.497)PPAS(0.003)S(0.003)PQPEAPTSSWR 58.373 0.014165 234320000 73134 65072 43838 48387 71899 80152 113290 102740 65960 132330 TRUE FALSE FALSE 68007.68426 59915.45773 60813.24762 112647.3813 62880.75699 70263.66117 84943.64374 79348.3448 71677.46591 99193.70668 0.685604829 0.604024789 0.613075664 1.135630325 0.633918815 0.708347974 0.856341058 0.799933256 0.722600942 1 16.59796097 -13.97529149 0.033830929 2.161169709 5.28E-07 0.222564421 0.147129927 1925.882969 4.899630027 257.6575087 93.31523494 1.06E-14 13.97529149 -2.161169181 KS(ph)SPSTGSLDSGNESK ddPTM_HeLa_A485_30min_R1 3 KSSPSTGSLDSGNESK 16 1 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KS(0.498)S(0.498)PS(0.002)T(0.002)GS(0.001)LDSGNESK;KS(0.378)S(0.378)PS(0.21)T(0.033)GSLDSGNESK;KS(0.498)S(0.497)PS(0.004)TGSLDSGNESK ;; 141.93 5.59E-08 1646900000 599760 474963 346205 1020410 726240 657330 995330 1055330 517630 1439090 TRUE FALSE FALSE 733174.5429 530505.7912 474280.6363 1076152.414 653932.9956 691746.7824 782669.6144 796508.6628 621513.593 1080351.347 0.67864454 0.491049317 0.439005919 0.996113363 0.605296598 0.640297977 0.724458405 0.737268172 0.575288395 1 20.04306915 -14 0.188382561 2.428807042 0.593601718 0.332950455 0.145809543 165.3571587 1.613339241 88.98209222 0.414680543 1.00E-14 14 -1.835205323 KS(ph)SPSTGSLDSGNESK ddPTM_HeLa_A486_30min_R1 3 KSSPSTGSLDSGNESK 16 1 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KS(0.47)S(0.47)PS(0.05)T(0.009)GSLDSGNESK;KS(0.421)S(0.421)PS(0.132)T(0.026)GS(0.001)LDSGNESK;KS(0.683)S(0.317)PSTGSLDSGNESK ;; 204.94 1.60E-25 1530070000 940150 875980 368800 609900 788840 1087500 1454820 1280630 685120 1753320 TRUE FALSE FALSE 874250.3399 806564.1545 511609.2368 1419878.023 689896.3316 953335.3069 1090808.648 989058.505 744506.7532 1314277.26 0.665194755 0.613694065 0.389270402 1.080348923 0.524924499 0.725368487 0.829968441 0.752549356 0.566476174 1 20.32583823 -14 0.156222575 2.084150276 0.602540966 0.215714925 0.178546628 211.6251953 1.92191626 71.9042653 0.797921536 1.00E-14 14 -1.48160931 KS(ph)SPSVKPAVDPAAAK ddPTM_HeLa_A485_30min_R1 2 KSSPSVKPAVDPAAAK 16 2 Q6FI81-3;Q6FI81;H3BPG7;H3BV90;H3BT65 Q6FI81-3 CIAPIN1 Anamorsin 1 0 KS(0.631)S(0.369)PSVKPAVDPAAAK;KS(0.628)S(0.371)PS(0.001)VKPAVDPAAAK ; 191.8 1.76E-18 31486000000 18824400 12267100 7145400 27428500 18398600 18875700 32395400 33025000 13712500 37655000 TRUE FALSE FALSE 23011822.84 13701630.64 9788780.805 28926849.5 16566770.78 19864002.46 25473858.14 24925566.97 16464472.97 28268301.49 0.814050425 0.484699466 0.34628118 1.023296342 0.586054694 0.702695295 0.901145693 0.881749722 0.582435877 1 24.75268187 -5.257093556 24.99961402 0.79599076 0.541979282 0.305443191 0.180467209 476.5221916 2741213.484 0.048784015 0.080935323 5.53E-06 5.257093556 -0.254011478 KS(ph)SPSVKPAVDPAAAK ddPTM_HeLa_A486_30min_R1 1 KSSPSVKPAVDPAAAK 16 2 Q6FI81-3;Q6FI81;H3BPG7;H3BV90;H3BT65 Q6FI81-3 CIAPIN1 Anamorsin 1 0 KS(0.573)S(0.366)PS(0.061)VKPAVDPAAAK 145.9 5.25E-08 4472400000 4891000 4134800 1290500 2332200 3470400 5409500 6832300 6239800 2978300 6976400 TRUE FALSE FALSE 4548166.157 3807143.389 1790216.161 5429479.463 3035110.072 4742130.89 5122786.275 4819133.754 3236461.442 5229464.031 0.869719369 0.728017894 0.342332627 1.038247788 0.580386451 0.906810117 0.979600633 0.921534927 0.618889703 1 22.31823166 -6.287729167 24.02332404 0.88635264 0.71026169 0.165345247 0.195028189 880.2147765 804327.0409 0.067744461 0.059767459 5.16E-07 6.287729167 -0.17609095 KS(ph)SSKDSRPSQAAGDNQGDEAK ddPTM_HeLa_A485_30min_R1 2 KSSSKDSRPSQAAGDNQGDEAK 22 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.305)S(0.305)S(0.185)KDS(0.185)RPS(0.018)QAAGDNQGDEAK;KS(0.323)S(0.323)S(0.323)KDS(0.028)RPS(0.003)QAAGDNQGDEAK ; 174.49 1.38E-13 843040000 971970 466580 268144 1990530 669860 831430 1646600 1339140 520330 2526810 TRUE FALSE FALSE 1188181.373 521142.4723 367341.624 2099267.614 603166.3864 874962.3892 1294790.459 1010713.815 624755.4583 1896922.769 0.626373088 0.274730464 0.193651334 1.106670049 0.317970977 0.461253565 0.682574156 0.532817588 0.329352079 1 20.85522951 -10.258532 4.239015691 1.000354657 0.504289648 0.261957479 0.250345603 169728603.9 359.5601013 590701.0349 0.059795083 5.51E-11 10.258532 -0.496065009 KS(ph)SSKDSRPSQAAGDNQGDEAK ddPTM_HeLa_A486_30min_R1 4 KSSSKDSRPSQAAGDNQGDEAK 22 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.332)S(0.332)S(0.332)KDS(0.003)RPSQAAGDNQGDEAK;KS(0.331)S(0.331)S(0.331)KDS(0.007)RPSQAAGDNQGDEAK;KS(0.344)S(0.344)S(0.233)KDS(0.078)RPS(0.001)QAAGDNQGDEAK;KS(0.374)S(0.374)S(0.247)KDS(0.005)RPSQAAGDNQGDEAK ;;; 170.82 2.67E-13 2869150000 1651670 1236090 444742 1388670 943280 1848760 2634930 2284130 935217 3635030 TRUE FALSE FALSE 1535896.462 1138137.727 616958.013 3232893.939 824965.0267 1620678.788 1975642.645 1764083.461 1016282.363 2724794.828 0.56367417 0.41769667 0.226423658 1.18647243 0.302762255 0.594789293 0.725061067 0.647418823 0.372975738 1 21.37771617 -11.45836592 2.203860032 5.453382924 0.565071962 0.208464203 0.257198499 9954704.214 570534.1282 222680802.5 0.063345064 3.48E-12 11.45836592 -4.888310962 KS(ph)SSLESLQTAVAEVR ddPTM_HeLa_A485_30min_R1 1 KSSSLESLQTAVAEVR 16 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 KS(0.652)S(0.249)S(0.099)LESLQTAVAEVR 138.03 2.87E-06 125870000 85378 93033 75916 76024 132960 104370 144540 137260 94587 119380 TRUE FALSE FALSE 104370.0415 103912.4001 104000.4875 80176.99862 119722.0355 109834.6518 113657.8482 103596.7698 113569.7433 89620.76303 1.164574347 1.159467924 1.160450815 0.894625262 1.33587387 1.225549171 1.268208888 1.155946081 1.267225802 1 16.45154539 -5.800383061 24.99999982 1.220405649 1.104089435 0.194611071 0.11151128 252.6453504 162185.0157 0.033472149 0.037954439 1.58E-06 5.800383061 -0.116316214 KS(ph)SSLESLQTAVAEVR ddPTM_HeLa_A486_30min_R1 2 KSSSLESLQTAVAEVR 16 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 KS(0.333)S(0.333)S(0.333)LESLQTAVAEVR;KS(0.552)S(0.328)S(0.12)LESLQTAVAEVR ; 182.39 6.53E-18 265120000 203368 211755 192618 92720 272063 205753 253085 243551 180436 239021 TRUE FALSE FALSE 189112.9534 194974.7626 267204.8481 215856.8458 237938.3217 180369.2868 189760.4561 188099.754 196076.3378 179168.5858 1.055502852 1.088219577 1.491359921 1.20476949 1.328013617 1.006701515 1.059116782 1.049847846 1.094367837 1 17.45095818 -6.270818881 24.83806743 1.046191653 1.238219188 0.40349258 0.116336504 681.7672431 1805398.473 0.0425137 0.037982776 5.36E-07 6.270818881 0.192027534 KS(ph)SSLESLQTAVAEVTLNGDIPFHRPRPR ddPTM_HeLa_A485_30min_R1 1 KSSSLESLQTAVAEVTLNGDIPFHRPRPR 29 3 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 KS(0.333)S(0.333)S(0.333)LESLQTAVAEVTLNGDIPFHRPRPR 194.99 2.58E-21 256230000 97194 101720 88928 91639 98520 108280 130610 191450 78097 139490 TRUE FALSE FALSE 118814.47 113615.2692 121826.1678 96645.00653 88711.00288 113949.3734 102704.1065 144496.5873 93770.35155 104717.7101 1.13461677 1.084967089 1.163376927 0.922909854 0.84714422 1.088157612 0.980771126 1.379867714 0.895458385 1 16.67614593 -9.888339152 14.03162007 0.99998947 1.057617754 0.012260763 0.147406224 0 0 0.142560184 0.034575923 1.29E-10 9.888339152 0.057628284 KS(ph)SSLESLQTAVAEVTLNGDIPFHRPRPR ddPTM_HeLa_A486_30min_R1 2 KSSSLESLQTAVAEVTLNGDIPFHRPRPR 29 3 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 KS(0.332)S(0.332)S(0.332)LES(0.004)LQTAVAEVTLNGDIPFHRPRPR;KS(0.324)S(0.324)S(0.324)LES(0.023)LQT(0.005)AVAEVTLNGDIPFHRPRPR ; 139.11 7.82E-07 545940000 293070 188507 169133 107866 255609 229456 255886 238932 158333 291400 TRUE FALSE FALSE 272527.3064 173569.0188 234625.8271 251117.4992 223548.1358 201148.0517 191860.6163 184532.3994 172057.4319 218431.5433 1.247655454 0.794615174 1.074138943 1.149639358 1.023424238 0.920874561 0.878355815 0.844806554 0.787694988 1 17.73682168 -6.362366268 2.581164222 0.866296441 1.051336907 0.349087997 0.118132873 0.338349169 4.402995438 0.045618298 0.039567355 4.34E-07 6.362366268 0.185040466 KS(ph)SSSS(ph)EDRNRMK ddPTM_HeLa_A486_30min_R1 1 KSSSSSEDRNRMK 13 3 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 2 0 KS(0.812)S(0.147)S(0.04)S(0.01)S(0.99)EDRNRMK 58.32 0.013651 292790000 147250 197230 256780 0 324370 113220 77578 133250 198330 21605 TRUE FALSE FALSE 136928.5354 181600.7765 356212.0928 0 283684.49 99252.06754 58167.16386 102911.8838 215521.4041 16194.96738 8.455005325 11.21340799 21.99523374 0 17.51682998 6.128574713 3.591681447 6.354559503 13.30792456 1 13.98325794 KS(ph)STGSISNVLFSTQDPVEDAVFGEATNLKK ddPTM_HeLa_A485_30min_R1 1 KSSTGSISNVLFSTQDPVEDAVFGEATNLKK 31 2 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 KS(0.379)S(0.379)T(0.115)GS(0.115)IS(0.011)NVLFSTQDPVEDAVFGEATNLKK 119.23 1.32E-05 181470000 81616 64119 35033 92267 72883 91647 130600 122880 60710 147070 TRUE FALSE FALSE 99771.19763 71617.15929 47993.16454 97307.31258 65626.51261 96445.49521 102696.2431 92743.48733 72893.94013 110408.1556 0.90365786 0.648658234 0.434688581 0.881341709 0.594399139 0.873535969 0.93015088 0.840005766 0.660222424 1 16.75248722 -6.278085961 24.31784677 0.855118877 0.686273616 0.239428751 0.149542941 884.7844324 1292516.278 0.052429204 0.046375736 5.27E-07 6.278085961 -0.168845261 KS(ph)SVNGSSATSSG ddPTM_HeLa_A485_30min_R1 1 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 0 KS(0.5)S(0.5)VNGSSATSSG 71.279 0.027551 516220000 483000 565730 322550 508900 426010 450830 563080 623660 383390 557850 TRUE FALSE FALSE 590441.6837 631887.2023 441874.6674 536699.9184 383594.9486 474434.7617 442773.3581 470706.4071 460332.8563 418788.2615 1.409881169 1.508846499 1.055126679 1.28155435 0.915963946 1.132875024 1.05727261 1.123972304 1.099201909 1 18.67586148 -4.762848066 24.99999985 1.089626356 1.459363921 0.725994663 0.092360046 16.45515785 292054.6187 0.022726164 0.051821707 1.73E-05 4.762848066 0.369737565 KS(ph)T(ph)S(ph)NLADLR ddPTM_HeLa_A485_30min_R1 1 KSTSNLADLR 10 1 A0A0A0MRY4;Q96N96-6 A0A0A0MRY4 3 0 KS(1)T(1)S(1)NLADLR 66.595 0.0086406 460910000 30034 43720 35851 34638 48671 51147 60255 96973 40470 34535 TRUE FALSE FALSE 36714.95968 48832.67369 49113.77678 36530.18623 43825.14435 53824.97783 47381.02701 73190.2197 48591.95779 25926.06007 1.416141118 1.883536239 1.894378731 1.409014179 1.690389678 2.076095546 1.827544443 2.823036725 1.874251531 1 14.66211536 -6.252702791 19.04591768 2.028335447 1.670405314 0.053327144 0.445457934 53.3731729 116352.0187 0.143311092 0.140168568 5.59E-07 6.252702791 -0.357930133 KS(ph)TAALEEDAQILK ddPTM_HeLa_A485_30min_R1 2 KSTAALEEDAQILK 14 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 KS(0.714)T(0.286)AALEEDAQILK;KS(0.958)T(0.042)AALEEDAQILK ; 215.06 1.25E-23 544470000 847950 524640 362670 1087710 780870 688690 1162860 1092050 535480 1392530 TRUE FALSE FALSE 1036573.552 585992.0842 496836.725 1147128.843 703123.841 724748.7435 914405.4613 824223.0252 642945.9243 1045397.899 0.991558863 0.56054454 0.47526088 1.097313133 0.672589683 0.693275493 0.874696097 0.788429962 0.615025078 1 19.99562073 -10.41936413 3.150389855 1.003702002 0.74906444 0.141603179 0.182988837 84519520.79 110522346.3 2828379.433 0.044058131 3.81E-11 10.41936413 -0.254637562 KS(ph)TAALEEDAQILK ddPTM_HeLa_A486_30min_R1 1 KSTAALEEDAQILK 14 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 KS(0.952)T(0.048)AALEEDAQILK 170.14 2.29E-12 291660000 454490 494790 207630 304390 395600 529270 675800 608430 298170 583360 TRUE FALSE FALSE 422632.598 455581.0384 288029.8965 708635.303 345980.1592 463974.0486 506707.6921 469903.7709 324015.6157 437282.859 0.966497061 1.041845179 0.658680967 1.620542147 0.791204485 1.061038728 1.158764131 1.07459911 0.740974884 1 18.73820727 -9.889992442 11.2939012 1.000008023 1.022032789 0 0.254748923 0 0 0.233811046 0.056707508 1.29E-10 9.889992442 0.022024766 KS(ph)VSSPTSSNTPTPTK ddPTM_HeLa_A485_30min_R1 1 KSVSSPTSSNTPTPTK 16 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 KS(0.769)VS(0.08)S(0.108)PT(0.04)S(0.002)S(0.001)NTPTPTK 86.856 0.00072197 267940000 325910 170250 175710 349660 289930 203670 296380 325600 243270 496670 TRUE FALSE FALSE 398407.5551 190159.2565 240712.4409 368761.0404 261063.5512 214333.8463 233055.9918 245746.0895 292092.0576 372859.3095 1.068519801 0.510002705 0.64558517 0.989008537 0.700166375 0.574838393 0.625050752 0.659085299 0.783384108 1 18.50827184 -8.08365573 5.770502472 0.999989593 0.712354854 0.198879909 0.166832904 1.149546875 77.30935559 0.159027445 0.041302151 8.25E-09 8.08365573 -0.28763474 KSAEFLLHMLK ddPTM_HeLa_A485_30min_R1 3 KSAEFLLHMLK 11 1 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3;A0A087WY81;J3KRB3;A0A087WWH0;J3QS96 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 0 ;; ;; 117.94 0.00035355 129306000 365775 427761 303452 356498 444280 524322 623025 832580 315217 567576 FALSE FALSE TRUE 447140.3868 477783.9279 415711.5225 375972.583 400045.9232 551774.6892 489910.6191 628388.4496 378478.1606 426089.7487 1.049404235 1.121322279 0.975643098 0.882378851 0.938877137 1.294972927 1.149782694 1.474779554 0.88825925 1 18.70079782 -6.252427296 24.94929964 1.190496597 0.99345672 0.205869061 0.160043864 879.9989875 2436214.302 0.051671862 0.050979038 5.59E-07 6.252427296 -0.197039877 KSAEFLLHMLK ddPTM_HeLa_A486_30min_R1 3 KSAEFLLHMLK 11 1 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3;A0A087WY81;J3KRB3;A0A087WWH0;J3QS96 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 0 ;; ;; 117.94 0.00035355 87116000 295552 329007 217542 128193 609579 343572 414632 407523 268796 411533 FALSE FALSE TRUE 274835.331 302935.2871 301780.0884 298439.7825 533119.9177 301185.5798 310886.6881 314738.9091 292095.4537 308482.4582 0.890926935 0.982017872 0.978273093 0.967444905 1.728201729 0.976345889 1.007793733 1.020281383 0.946878651 1 18.23482893 -3.29660408 13.1540783 1.059856941 1.049651479 0 0.228926796 0 0 0.053975524 0 0.000505122 3.29660408 -0.010205462 KSAEPSANTTLVS(ph)ETEEEGSVPAFGAAAK ddPTM_HeLa_A485_30min_R1 3 KSAEPSANTTLVSETEEEGSVPAFGAAAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KSAEPSANTT(0.001)LVS(0.798)ET(0.184)EEEGS(0.017)VPAFGAAAK;KSAEPSANTTLVS(0.849)ET(0.151)EEEGSVPAFGAAAK;KSAEPSANTTLVS(0.998)ET(0.001)EEEGSVPAFGAAAK ;; 220.14 1.16E-38 1858160000 1255770 748243 666170 1744770 1314090 1029112 1483930 1080660 1106927 2582890 TRUE FALSE FALSE 1535111.704 835743.51 912614.0046 1840082.367 1183254.586 1082994.713 1166876.233 815626.4406 1329077.096 1939023.058 0.791693373 0.431012672 0.470656603 0.948973948 0.610232344 0.558525959 0.601785641 0.420637825 0.685436457 1 20.88689853 -8.024145841 23.62683209 1.000000009 0.600869263 0.371302905 0.154195378 1164.480411 1139450.107 0.150053528 0.038743654 9.46E-09 8.024145841 -0.399130746 KSAEPSANTTLVS(ph)ETEEEGSVPAFGAAAK ddPTM_HeLa_A486_30min_R1 4 KSAEPSANTTLVSETEEEGSVPAFGAAAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KSAEPS(0.001)ANT(0.001)T(0.004)LVS(0.842)ET(0.153)EEEGSVPAFGAAAK;KSAEPS(0.001)ANT(0.004)T(0.002)LVS(0.99)ET(0.003)EEEGSVPAFGAAAK;KSAEPSANTTLVS(0.995)ET(0.004)EEEGSVPAFGAAAK;KSAEPSANT(0.001)T(0.002)LVS(0.809)ET(0.185)EEEGS(0.002)VPAFGAAAK ;;; 282.43 1.13E-77 2391090000 2094040 2319230 1170400 973180 1986140 2845290 2911410 2939840 2104020 2806830 TRUE FALSE FALSE 1947258.61 2135445.768 1623610.224 2265612.222 1737019.801 2494267.049 2182944.424 2270502.608 2286398.148 2103981.499 0.92551128 1.014954632 0.771684649 1.076821361 0.825587013 1.185498566 1.037530238 1.07914571 1.086700691 1 21.00469059 -6.260821158 24.99999907 1.080206346 0.928174305 0.415718789 0.091668483 55.59424101 2248202.707 0.029094876 0.027472171 5.49E-07 6.260821158 -0.152032041 KSAEPSANTTLVSET(ph)EEEGSVPAFGAAAK ddPTM_HeLa_A486_30min_R1 1 KSAEPSANTTLVSETEEEGSVPAFGAAAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KSAEPSANTTLVS(0.41)ET(0.59)EEEGSVPAFGAAAK 190.22 4.11E-38 0 117570 131730 74401 39527 127400 159510 160020 139740 108800 158110 TRUE FALSE FALSE 109328.9501 121291.235 103211.0597 92020.85358 111420.304 139831.278 119981.3035 107924.2525 118230.8716 118518.2269 0.922465287 1.023397314 0.870845459 0.776427863 0.940111129 1.179829311 1.012344739 0.910613121 0.997575434 1 16.85474942 -6.011607228 24.79212935 1.019110342 0.899386843 0.323008437 0.083858033 679.1608262 1450636.462 0.029231782 0.03088753 9.74E-07 6.011607228 -0.119723499 KSAS(ph)PEVSEGHENQHGQESEAK ddPTM_HeLa_A485_30min_R1 3 KSASPEVSEGHENQHGQESEAK 22 1 O60930 O60930 RNASEH1 Ribonuclease H1 1 0 KS(0.289)AS(0.711)PEVSEGHENQHGQESEAK;KS(0.41)AS(0.586)PEVS(0.004)EGHENQHGQESEAK;KS(0.344)AS(0.64)PEVS(0.015)EGHENQHGQESEAK ;; 251.39 7.59E-48 2807760000 869840 710410 546897 911600 1069160 934240 1613250 1584430 765000 1612440 TRUE FALSE FALSE 1063332.907 793486.2698 749216.9586 961398.3997 962710.6764 983155.3618 1268565.958 1195846.058 918528.483 1210488.383 0.878432972 0.655509199 0.618937752 0.794223566 0.795307654 0.812197272 1.047978631 0.987903788 0.758808177 1 20.2071578 -6.314553421 1.761776707 0.944418166 0.726151292 0.455816411 0.100692126 0.32610977 1.999722214 0.044007197 0.038648142 4.85E-07 6.314553421 -0.218266874 KSAS(ph)PEVSEGHENQHGQESEAK ddPTM_HeLa_A486_30min_R1 2 KSASPEVSEGHENQHGQESEAK 22 1 O60930 O60930 RNASEH1 Ribonuclease H1 1 0 KS(0.249)AS(0.75)PEVS(0.001)EGHENQHGQESEAK;KS(0.058)AS(0.933)PEVS(0.009)EGHENQHGQESEAK ; 227.04 2.97E-36 1616540000 714080 658270 344180 94411 634870 797940 1014530 982380 519530 746710 TRUE FALSE FALSE 664026.6795 606106.2878 477455.7135 219793.5793 555238.6847 699498.2757 760683.8634 758713.5192 564563.2787 559728.9557 1.186336123 1.082856768 0.853012353 0.392678594 0.991977776 1.249708932 1.359021819 1.355501643 1.0086369 1 19.09436886 -6.136763834 4.702964338 1.225393724 0.871114003 0.297767007 0.225914772 0.282695779 9.619877683 0.081398895 0.081716579 7.30E-07 6.136763834 -0.354279721 KSASSCDVSS(ph)SPSLPSR ddPTM_HeLa_A486_30min_R1 2 KSASSCDVSSSPSLPSR 17 1 O75140;A0A2R8Y5T1;A0A2R8Y7U0;H0Y770;A0A2R8Y6H3;A0A2R8Y721;A0A2R8Y5K9;A0A5F9UWT1;A0A2R8Y842;A0A2R8YEW8;A0A2R8Y6V4;A0A2R8Y7U6;A0A2R8Y5E9;A0A2R8YF97;A0A2R8Y6H8;A0A2R8YF50;O75140-6;O75140-8;O75140-5;O75140-1;O75140-4;O75140-9;O75140-2;A0A2R8Y5P2 O75140 DEPDC5 DEP domain-containing protein 5 1 0 KSASSCDVS(0.021)S(0.478)S(0.478)PS(0.021)LPS(0.001)R;KSASSCDVS(0.01)S(0.495)S(0.495)PS(0.001)LPSR ; 113.26 7.12E-06 0 378870 357870 237119 132769 416490 335180 371030 408920 266961 386590 TRUE FALSE FALSE 352313.1695 329511.0779 328937.8271 309092.9418 364249.9406 293828.8995 278194.3696 315817.8427 290101.3944 289785.3477 1.215772889 1.137086745 1.135108554 1.066627227 1.256964658 1.01395361 0.960001504 1.089833717 1.001090623 1 18.14462512 -6.294960133 24.15655172 1.015279546 1.154083483 0.635722059 0.056336658 293.0678435 211196.6933 0.019497468 0.017196299 5.07E-07 6.294960133 0.138803937 KSATVKPGAVGAGEFVSPCES(ph)GDNTGEPSALEEQR ddPTM_HeLa_A485_30min_R1 1 KSATVKPGAVGAGEFVSPCESGDNTGEPSALEEQR 35 2 Q12888;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KSATVKPGAVGAGEFVS(0.004)PCES(0.783)GDNT(0.209)GEPS(0.004)ALEEQR 65.57 0.0014936 93056000 42495 41177 31054 51218 52674 46157 63425 61885 42096 66727 TRUE FALSE FALSE 51947.86614 45992.29196 42542.16686 54015.90965 47429.59161 48573.70915 49873.73062 46707.60672 50544.28107 50093.18692 1.03702458 0.918134676 0.849260538 1.078308508 0.946827194 0.969666977 0.995619039 0.932414358 1.0090051 1 15.61232678 -5.255052795 24.99966402 0.985002129 0.933139418 0.162979047 0.056684024 1023.218143 4005280.614 0.015309043 0.025753531 5.56E-06 5.255052795 -0.051862711 KSDASDMNSDTS(ph)PSCR ddPTM_HeLa_A485_30min_R1 1 KSDASDMNSDTSPSCR 16 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KSDASDMNSDT(0.037)S(0.962)PS(0.001)CR 163.95 3.83E-12 253030000 275920 298500 255910 312890 402650 333420 440720 525230 324060 468890 TRUE FALSE FALSE 337297.4521 333406.9784 350581.7583 329982.3884 362560.7522 350877.3556 346556.5716 396416.519 389095.8695 352004.3523 0.95821955 0.947167205 0.99595859 0.937438376 1.029989402 0.996798345 0.984523542 1.126169368 1.105372326 1 18.42523374 -7.244274746 22.36716183 1.086828111 0.97913985 0.559683746 0.039798266 130.2209298 169690.9112 0.018449721 0.010601403 5.70E-08 7.244274746 -0.107688261 KSDASDMNSDTS(ph)PSCR ddPTM_HeLa_A486_30min_R1 2 KSDASDMNSDTSPSCR 16 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KSDASDMNSDT(0.029)S(0.967)PS(0.004)CR;KSDASDMNS(0.001)DT(0.153)S(0.844)PS(0.002)CR ; 138.35 2.61E-06 462920000 354760 398590 278340 155585 470250 409740 471890 499540 321910 421240 TRUE FALSE FALSE 329893.156 367004.2768 386120.7022 362209.7428 411266.8601 359190.4447 353818.1309 385805.6469 349813.418 315758.7622 1.044763267 1.162293246 1.222834481 1.147109079 1.302471726 1.137547038 1.120533056 1.221836709 1.107850232 1 18.26846324 -8.036715799 6.070222543 1.000021085 1.172136886 0.389117229 0.065457817 0.240377168 33.54247671 0.0627196 0.016275025 9.19E-09 8.036715799 0.172115801 KSDGACDS(ph)PS(ph)SDKENSSQIAQDHQK ddPTM_HeLa_A486_30min_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 2 0 KS(0.005)DGACDS(0.925)PS(0.52)S(0.52)DKENS(0.015)S(0.015)QIAQDHQK 49.287 0.026846 208280000 136860 178690 87036 138730 221330 238160 375250 351750 120290 311930 TRUE FALSE FALSE 127266.8207 164529.9536 120738.6701 322970.451 193568.7276 208778.2406 281358.481 271664.2036 130716.8341 233820.6977 0.544292366 0.703658638 0.516372893 1.381274003 0.827851125 0.892898887 1.203308705 1.161848401 0.559047319 1 17.83504312 -5.230265115 24.99910864 1.006858081 0.599662953 0.435714338 0.216617682 646.1368001 518146.0789 0.057476273 0.099539522 5.88E-06 5.230265115 -0.407195128 KSDGACDS(ph)PSS(ph)DKENSSQIAQDHQK ddPTM_HeLa_A485_30min_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 2 0 KSDGACDS(1)PS(0.002)S(0.997)DKENSSQIAQDHQK 232.38 3.38E-39 668580000 164090 63911 41090 438490 185780 114190 242450 216780 112810 741660 TRUE FALSE FALSE 200591.2544 71384.8355 56290.9009 462443.5984 167283.0909 120168.8118 190648.5769 163614.3651 135449.9322 556777.8112 0.360271639 0.128210633 0.101101193 0.83057117 0.300448559 0.215829024 0.342414107 0.293859349 0.243274659 1 19.08674219 -10.63852485 2.737313581 1.070257288 0.31354044 0.538016848 0.19101293 38190817.92 35275591.17 18992244.08 0.050908177 2.30E-11 10.63852485 -0.756716849 KSDGACDS(ph)PSS(ph)DKENSSQIAQDHQK ddPTM_HeLa_A486_30min_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 2 0 KSDGACDS(1)PS(0.446)S(0.554)DKENSSQIAQDHQK 201.08 1.48E-28 493370000 190410 173150 35588 167980 130910 293490 413190 316380 121570 478290 TRUE FALSE FALSE 177063.2423 159428.9634 49368.62668 391065.9292 114490.0471 257282.1878 309805.4917 244347.1805 132107.7855 358523.0709 0.493868475 0.444682578 0.1377 1.090769217 0.319338019 0.717616825 0.864115916 0.681538234 0.368477781 1 18.45170643 -5.242276818 24.99697564 0.696174078 0.367343607 0.310120108 0.245155146 1088.144208 1419448.953 0.064267168 0.111085255 5.72E-06 5.242276818 -0.32883047 KSDGACDS(ph)PSS(ph)DKENSSQIAQDHQKK ddPTM_HeLa_A485_30min_R1 1 KSDGACDSPSSDKENSSQIAQDHQKK 26 3 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 2 0 KS(0.003)DGACDS(0.994)PS(0.418)S(0.561)DKENS(0.012)S(0.012)QIAQDHQKK 63.23 0.0092022 148040000 42421 32908 15897 75573 56809 51278 132740 164660 38947 177240 TRUE FALSE FALSE 51857.4051 36756.30434 21777.96183 79701.36163 51152.89649 53962.83679 104379.0146 124276.8768 46763.30566 133057.3299 0.389737305 0.276244115 0.163673522 0.599000158 0.38444253 0.405560797 0.784466476 0.934010001 0.351452308 1 17.02168846 -6.78765849 0.288974275 1.003573968 0.153747573 0.51130479 0.190223082 1.599137822 0.380576421 0.321781187 0.493674067 1.63E-07 6.78765849 -0.849826395 KSDGACDS(ph)PSSDKENSSQIAQDHQK ddPTM_HeLa_A485_30min_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 KSDGACDS(0.992)PS(0.004)S(0.004)DKENSSQIAQDHQK 97.771 0.00071127 484510000 171340 94867 56576 298270 172130 132050 246560 224240 111940 507570 TRUE FALSE FALSE 209453.9919 105960.8704 77505.81672 314563.7348 154992.1328 138963.9338 193880.4418 169244.7884 134405.3312 381042.1401 0.549687213 0.278081764 0.203404843 0.825535293 0.406758509 0.364694398 0.508816274 0.444162917 0.352730885 1 18.53959103 -10.44482823 4.178260097 1.002700096 0.436266773 0.52122895 0.16184521 453513597.6 40668.4504 11781972.15 0.039230568 3.59E-11 10.44482823 -0.566433323 KSDGACDSPS(ph)SDKENSSQIAQDHQK ddPTM_HeLa_A486_30min_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 KS(0.001)DGACDS(0.097)PS(0.444)S(0.444)DKENS(0.007)S(0.007)QIAQDHQK 55.046 0.01241 295460000 176660 158840 52145 107430 146330 220210 307830 240240 115060 304950 TRUE FALSE FALSE 164277.0463 146252.9399 72336.94049 250102.4692 127975.9269 193042.7291 230807.6781 185542.5964 125033.4934 228588.5351 0.718658292 0.639808728 0.316450431 1.094116418 0.55985278 0.844498737 1.009708024 0.811688112 0.546980597 1 17.80239352 -5.259024744 24.99997648 0.826095065 0.566456128 0.302584972 0.193952885 286.9861541 2971301.189 0.052741766 0.086078962 5.51E-06 5.259024744 -0.259638937 KSDIDEIVLVGGSTR ddPTM_HeLa_A485_30min_R1 1 KSDIDEIVLVGGSTR 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 145.55 1.54E-06 17571000 58116 59055 49776 65088 72574 65408 78693 82875 56070 97032 FALSE FALSE TRUE 71043.7037 65960.96854 68190.21375 68643.59263 65348.27774 68832.66174 61879.59769 62549.77631 67322.7347 72843.70814 0.9752895 0.905513602 0.936116728 0.942340723 0.897102569 0.944936268 0.849484455 0.858684681 0.924207957 1 16.15251674 -5.905057781 1.504557723 0.90117752 0.937878169 0.039116479 0.044065394 0.911980157 4.269075195 0.016902096 0.02041802 1.24E-06 5.905057781 0.036700649 KSDPVT(ph)PK ddPTM_HeLa_A485_30min_R1 1 KSDPVTPK 8 1 Q8IYW5 Q8IYW5 RNF168 E3 ubiquitin-protein ligase RNF168 1 0 KSDPVT(1)PK 67.726 0.016035 151580000 171360 129390 73222 279920 140010 193500 268570 282410 126920 404130 TRUE FALSE FALSE 209478.4408 144521.035 100309.8648 295211.3208 126070.1128 203631.3608 211187.8255 213148.5047 152391.6798 303387.8285 0.690464222 0.476357393 0.330632463 0.973049322 0.415541103 0.671191596 0.696098543 0.70256116 0.502299913 1 18.21080368 -14 0.233041077 3.127486577 0.56519128 0.307450242 0.175076652 200.4813749 2.006091053 201.6909919 0.288474985 1.00E-14 14 -2.562295298 KSDVEAIFSK ddPTM_HeLa_A485_30min_R1 2 KSDVEAIFSK 10 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;G3V4M8;G3V2H6;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 113.77 0.0013794 455120000 764330 828640 588580 859500 1009950 953530 1227410 1368290 738410 1154090 FALSE FALSE TRUE 934352.5716 925542.2398 806320.2349 906452.3086 909395.8319 1003455.356 965163.8265 1032714.732 886602.1139 866396.6025 1.078435175 1.068266239 0.930659507 1.046232529 1.049629961 1.158194011 1.113997705 1.191965353 1.023321319 1 19.72466806 -6.0716144 5.527148281 1.110507359 1.028649516 0.178151847 0.065362645 0.310115376 17.42191716 0.021301286 0.021564784 8.48E-07 6.0716144 -0.081857842 KSDVEAIFSK ddPTM_HeLa_A486_30min_R1 2 KSDVEAIFSK 10 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;G3V4M8;G3V2H6;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 124.38 0.00019379 280530000 1094720 1074270 638080 471920 1388690 1173180 1355400 1334650 924850 1276220 FALSE FALSE TRUE 1017985.781 989140.9328 885161.6644 1098653.61 1214507.551 1028444.98 1016264.584 1030779.33 1005016.743 956646.2052 1.064119395 1.033967341 0.925275885 1.14844297 1.269547242 1.075052589 1.062320196 1.077492729 1.050562619 1 19.86762595 -5.278045146 24.97813085 1.105611157 1.010405509 0.223780457 0.075617223 1175.609312 1768330.04 0.022647847 0.033704964 5.27E-06 5.278045146 -0.095205648 KSEAPAEVTHFS(ph)PK ddPTM_HeLa_A485_30min_R1 4 KSEAPAEVTHFSPK 14 1 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 0 KSEAPAEVT(0.001)HFS(0.999)PK;KSEAPAEVTHFS(1)PK;KSEAPAEVT(0.001)HFS(0.999)PK;KSEAPAEVTHFS(1)PK ;;; 165.3 3.63E-12 2632490000 3421330 2723110 1857710 5309380 3905420 3615550 5788070 5570540 2793690 6981800 TRUE FALSE FALSE 4182393.055 3041554.027 2544954.235 5599417.985 3516582.672 3804854.607 4551401.56 4204356.331 3354357.958 5241365.751 0.797958634 0.580297993 0.485551735 1.068312774 0.670928693 0.725928086 0.868361755 0.802149007 0.639977845 1 22.32151136 -14 0.123072191 1.797804439 0.624919005 0.198119459 0.154732569 253.3725184 2.002133794 50.97035554 1.407122196 1.00E-14 14 -1.172885434 KSEAPAEVTHFS(ph)PK ddPTM_HeLa_A486_30min_R1 3 KSEAPAEVTHFSPK 14 1 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 0 KSEAPAEVTHFS(1)PK;KSEAPAEVTHFS(1)PK;KSEAPAEVTHFS(1)PK ;; 149.36 5.18E-08 2958490000 4443800 4213200 1895980 2382200 3844700 5232600 6665900 6168800 3387990 7540100 TRUE FALSE FALSE 4132312.568 3879330.688 2630154.232 5545881.99 3362461.876 4587055.013 4998021.315 4764298.904 3681663.701 5652009.882 0.731122672 0.686363041 0.465348484 0.981222982 0.594914366 0.81157944 0.884290973 0.842938884 0.651390174 1 22.43033256 -13.99999996 0.064814922 1.900104543 0.388539733 0.262199602 0.139407464 473.6291217 2.222786665 65.89330757 9.524809814 1.00E-14 13.99999996 -1.511564811 KSES(ph)PFR ddPTM_HeLa_A485_30min_R1 3 KSESPFR 7 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 KS(0.03)ES(0.97)PFR;KS(0.007)ES(0.993)PFR;KS(0.256)ES(0.744)PFR ;; 58.699 0.023265 794080000 826170 805700 620110 882660 781920 769960 883810 827210 675020 1098460 TRUE FALSE FALSE 1009948.666 899919.6063 849514.4939 930877.4808 704069.2993 810273.915 694976.7734 624335.4505 810490.3223 824634.1377 1.224723329 1.0912956 1.030171388 1.128836945 0.853795965 0.982585947 0.842769832 0.757105996 0.982848375 1 19.65339466 -5.333849214 0.803313324 0.879998065 1.191526561 0.556045134 0.089620568 0.600788004 0.713821763 0.041803725 0.128631065 4.64E-06 5.333849214 0.311528496 KSES(ph)PFR ddPTM_HeLa_A486_30min_R1 2 KSESPFR 7 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 KS(0.002)ES(0.998)PFR;KS(0.003)ES(0.997)PFR ; 69.01 0.012898 345220000 763280 818660 411630 225300 590380 765970 784880 689850 623070 936420 TRUE FALSE FALSE 709778.0136 753786.4001 571024.1598 524509.786 516329.0353 671472.4092 588494.7224 532786.2143 677078.2093 701934.3369 1.011174374 1.073870247 0.813500822 0.747234832 0.73558025 0.956602881 0.838389991 0.759025718 0.964589099 1 19.42097655 -4.762499599 24.99988883 0.838628718 1.042522357 0.404007638 0.091504075 23.2572567 548467.1255 0.023393174 0.053595046 1.73E-05 4.762499599 0.20389364 KSES(ph)PFRETEPLVS(ph)PHQDK ddPTM_HeLa_A486_30min_R1 1 KSESPFRETEPLVSPHQDK 19 2 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 2 0 KS(0.121)ES(0.798)PFRET(0.088)EPLVS(0.993)PHQDK 71.506 0.0033237 467410000 1148900 1104700 868950 618860 1253000 1306500 1628600 1542300 1069900 1608100 TRUE FALSE FALSE 1068368.043 1017159.549 1205430.711 1440737.355 1095837.056 1145317.314 1221107.054 1191151.958 1162639.793 1205421.293 0.886302614 0.843820791 1.000007813 1.195214788 0.909090509 0.950138611 1.01301268 0.988162367 0.964509089 1 20.20110602 -4.767925371 24.71058886 1.004143825 0.865061689 0.370616359 0.071625009 126.142525 480590.9315 0.01939987 0.041992757 1.71E-05 4.767925371 -0.139082136 KSES(ph)PFRETEPLVSPHQDK ddPTM_HeLa_A485_30min_R1 1 KSESPFRETEPLVSPHQDK 19 2 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 KS(0.322)ES(0.676)PFRET(0.002)EPLVSPHQDK 192.3 6.24E-19 1081700000 240560 216040 158620 322510 350890 297170 467160 516160 254580 481690 TRUE FALSE FALSE 294071.7421 241303.9987 217300.1387 340127.9047 315954.1596 312729.3617 367347.4497 389570.9507 305671.8709 361613.5478 0.813221031 0.667298004 0.600918135 0.940583965 0.873734298 0.864816497 1.015856435 1.07731293 0.845299831 1 18.4640892 -5.275427525 24.36219201 0.945188856 0.691160958 0.652921959 0.084042434 337.188744 587257.8013 0.024678261 0.036823247 5.30E-06 5.275427525 -0.254027898 KSES(ph)PFRETEPLVSPHQDK ddPTM_HeLa_A486_30min_R1 3 KSESPFRETEPLVSPHQDK 19 2 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 KS(0.022)ES(0.977)PFRET(0.001)EPLVSPHQDK;KS(0.015)ES(0.985)PFRETEPLVSPHQDK;KS(0.13)ES(0.87)PFRETEPLVSPHQDK ;; 259.82 1.59E-58 1635210000 1323840 1335580 646600 277551 1402330 1524700 2045090 1837910 1060410 1697200 TRUE FALSE FALSE 1231045.652 1229743.777 896980.8365 646152.7547 1226436.695 1336598.016 1533386.851 1419458.014 1152327.193 1272210.073 0.967643378 0.96662006 0.705057172 0.507897845 0.964020582 1.050611093 1.205293751 1.115741845 0.905768015 1 20.27890548 -5.990181684 24.98573999 1.064883995 0.786578155 0.44359478 0.141965155 204.7166468 520961.0829 0.048078509 0.054455772 1.02E-06 5.990181684 -0.27830584 KSETQHRGSAPHSES(ph)DLPEQEEEILGS(ph)DDDEQEDPNDYCK ddPTM_HeLa_A486_30min_R1 1 KSETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPNDYCK 40 2 H3BLV9;Q96SB4;Q96SB4-3 H3BLV9 SRPK1 SRSF protein kinase 1 2 0 KS(0.12)ET(0.137)QHRGS(0.194)APHS(0.257)ES(0.297)DLPEQEEEILGS(0.996)DDDEQEDPNDYCK 76.809 0.00059885 226770000 15066 13427 10172 2661.4 20750 17061 20770 25500 11831 16025 TRUE FALSE FALSE 14009.9512 12362.99562 14110.87082 6195.8737 18147.34151 14956.18728 15573.12632 19694.20666 12856.52061 12012.23569 1.166306719 1.02920022 1.17470812 0.515796881 1.510738049 1.245079406 1.296438624 1.639512174 1.07028541 1 13.55221707 -5.806495718 24.999965 1.323359478 0.990133735 0.287042709 0.245387795 156.7610761 86979.56798 0.073185838 0.082985293 1.56E-06 5.806495718 -0.333225743 KSFKLS(ph)GFSFK ddPTM_HeLa_A486_30min_R1 1 KSFKLSGFSFK 11 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 KS(0.001)FKLS(0.999)GFSFK 104.2 0.00036011 520370000 798140 776260 362530 335450 704460 897600 1071000 953460 608620 1120600 TRUE FALSE FALSE 742194.5076 714746.3305 502911.3249 780944.5527 616100.058 786863.2381 803024.4721 736377.9719 661375.6716 839994.4661 0.883570711 0.850894094 0.598707902 0.929702021 0.733457282 0.936748121 0.955987812 0.876646218 0.787357177 1 19.6800203 -6.272966341 24.86598946 0.906428254 0.79823889 0.240941554 0.099268288 1104.694896 2383043.614 0.034582253 0.030756774 5.33E-07 6.272966341 -0.108189363 KSFT(ph)PDHVVYAR ddPTM_HeLa_A485_30min_R1 3 KSFTPDHVVYAR 12 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 KS(0.098)FT(0.902)PDHVVYAR;KS(0.013)FT(0.987)PDHVVYAR;KS(0.082)FT(0.918)PDHVVYAR ;; 139.6 4.23E-06 2440390000 1244250 1445800 1204090 1024260 2017960 1482440 1715340 2099020 1229610 1564900 TRUE FALSE FALSE 1521029.12 1614873.733 1649532.997 1080212.73 1817044.817 1560058.266 1348843.596 1584232.054 1476381.448 1174799.23 1.294714093 1.374595499 1.404097786 0.919487094 1.5466854 1.327936065 1.148148179 1.348513017 1.256709581 1 20.16398279 -12.61812533 0.318635889 1.58E-10 1.306684275 0.23821177 0.157532641 179.4022594 3.668611379 118.6123975 0.141892242 2.41E-13 12.61812533 1.306684275 KSFT(ph)PDHVVYAR ddPTM_HeLa_A486_30min_R1 2 KSFTPDHVVYAR 12 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 KS(0.131)FT(0.869)PDHVVYAR;KS(0.059)FT(0.941)PDHVVYAR ; 131.61 2.19E-05 1431970000 1164870 1026580 776280 315736 1364280 975040 1256030 1321740 815040 963200 TRUE FALSE FALSE 1083218.628 945230.0621 1076876.405 735049.3644 1193159.281 854749.4783 941758.0091 1020808.655 885688.3234 722008.4506 1.500285249 1.309167588 1.49150111 1.018061996 1.652555839 1.183849687 1.304358707 1.413845855 1.226700772 1 19.4616562 -13.01748714 0.198335486 3.85E-11 1.405927681 0.300220174 0.167617539 114.0138972 1.600473104 45.92194203 0.398248066 9.61E-14 13.01748714 1.405927681 KSGGDFKPT(ph)SPSLPASK ddPTM_HeLa_A486_30min_R1 1 KSGGDFKPTSPSLPASK 17 2 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 KS(0.004)GGDFKPT(0.622)S(0.347)PS(0.027)LPASK 95.48 0.00064215 324440000 404230 390590 195310 201370 374100 453770 542440 498490 308360 621370 TRUE FALSE FALSE 375895.5644 359638.2259 270939.2626 468799.5367 327176.8897 397788.471 406715.7747 384994.709 335088.8931 465774.9076 0.807032664 0.772128812 0.581695704 1.006493757 0.702435628 0.854035854 0.873202416 0.826568161 0.719422381 1 18.82927339 -14 0.208214134 1.940162337 0.766832753 0.238554672 0.1083136 213.3382034 2.124470552 84.10417578 0.231218986 1.00E-14 14 -1.173329584 KSGS(ph)ELPSILPEIWPK ddPTM_HeLa_A486_30min_R1 1 KSGSELPSILPEIWPK 16 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 KS(0.411)GS(0.569)ELPS(0.02)ILPEIWPK 100.92 0.00027272 89319000 121820 118140 57623 57483 105100 145890 167670 165290 95097 167520 TRUE FALSE FALSE 113281.0471 108778.1561 79936.1688 133823.329 91917.37798 127891.5751 125717.1926 127657.0753 103340.0845 125571.9016 0.902120981 0.866261916 0.636576876 1.065710778 0.731990014 1.01847287 1.001157034 1.016605416 0.82295548 1 16.93815415 -6.281100106 24.99087324 0.974708432 0.843140617 0.239522506 0.116881409 1230.500368 1564092.177 0.039780288 0.035131153 5.23E-07 6.281100106 -0.131567815 KSGVS(ph)SDNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A485_30min_R1 1 KSGVSSDNEDDDDEEDGNYLHPSLFASK 28 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 KS(0.116)GVS(0.442)S(0.442)DNEDDDDEEDGNYLHPSLFASK 223.4 1.75E-38 171440000 103660 111240 82675 67636 196290 114290 191910 216090 119000 161020 TRUE FALSE FALSE 126718.8094 124248.5503 113259.9229 71330.78342 176746.6784 120274.0477 150906.8607 163093.5887 142882.2085 120880.6774 1.048296652 1.027861136 0.936956389 0.590092519 1.462158239 0.994981583 1.248395228 1.349211406 1.182010323 1 16.88322412 -5.770274049 24.99999995 1.215142879 0.912459806 0.416310398 0.176703753 191.120088 540822.7288 0.054146717 0.062307695 1.70E-06 5.770274049 -0.302683073 KSGVS(ph)SDNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A486_30min_R1 1 KSGVSSDNEDDDDEEDGNYLHPSLFASK 28 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 KS(0.216)GVS(0.65)S(0.134)DNEDDDDEEDGNYLHPSLFASK 253.76 4.89E-63 182350000 320160 286980 158420 24290 308640 265300 351450 320770 252070 139590 TRUE FALSE FALSE 297718.4373 264238.6596 219764.4666 56548.34755 269927.4932 232569.9834 263513.4927 247737.6734 273919.6306 104635.7554 2.845283967 2.525318985 2.100280786 0.540430442 2.579686955 2.22266263 2.518388592 2.367619676 2.617839662 1 16.6750164 KSHS(ph)LDLNIS(ph)EK ddPTM_HeLa_A485_30min_R1 1 KSHSLDLNISEK 12 1 Q86T96-2;Q86T96 Q86T96-2 RNF180 E3 ubiquitin-protein ligase RNF180 2 0 KS(0.51)HS(0.618)LDLNIS(0.872)EK 51.695 0.021519 288760000 176570 187530 133290 77492 218590 230170 256060 350240 253440 146560 TRUE FALSE FALSE 215847.3873 209460.0022 182599.5177 81725.19174 196826.4121 242221.3453 201350.6892 264343.0908 304303.0833 110025.2892 1.961797954 1.903744163 1.659614066 0.742785521 1.788919742 2.201506099 1.830040081 2.402566652 2.765755813 1 16.74747564 -6.005113362 24.98491821 2.101257753 1.556180595 0.14679756 0.527859643 392.280501 1916775.07 0.167530262 0.184784675 9.88E-07 6.005113362 -0.545077158 KSHS(ph)PVKRPR ddPTM_HeLa_A485_30min_R1 2 KSHSPVKRPR 10 3 H3BUV2;P78549-3;P78549-2;P78549;H3BRL9;A0A494C106;H3BPD5 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 KS(0.002)HS(0.998)PVKRPR;KSHS(1)PVKRPR ; 82.85 0.0056449 1538610000 907860 471950 136990 939770 228640 973890 760290 1141040 432330 863410 TRUE FALSE FALSE 1109810.325 527140.4471 187668.3016 991107.2555 205875.7988 1024881.374 597847.8305 861198.1509 519094.6654 648177.7769 1.712200517 0.813265227 0.289532144 1.52906701 0.317622427 1.581173269 0.922351632 1.328644982 0.800852303 1 19.30603003 KSHS(ph)PVKRPR ddPTM_HeLa_A486_30min_R1 2 KSHSPVKRPR 10 3 H3BUV2;P78549-3;P78549-2;P78549;H3BRL9;A0A494C106;H3BPD5 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 KS(0.001)HS(0.999)PVKRPR;KS(0.002)HS(0.998)PVKRPR ; 75.589 0.010113 860120000 684990 377570 330820 391530 214690 1215110 689200 728420 805970 1303780 TRUE FALSE FALSE 636975.7383 347649.9781 458922.3637 911501.6268 187761.5783 1065202.083 516754.8704 562574.6673 875832.1285 977305.0018 0.651767603 0.355723114 0.469579469 0.932668538 0.192121782 1.089938229 0.528754963 0.575638789 0.896170721 1 19.89844935 -11.10303684 0.08623434 1.842925118 0.174678786 0.230553188 0.248396088 157.0580238 1.850171836 34.31124124 8.289046509 7.89E-12 11.10303684 -1.668246333 KSLDS(ph)DES(ph)EDEEDDYQQK ddPTM_HeLa_A485_30min_R1 6 KSLDSDESEDEEDDYQQK 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 KS(0.034)LDS(0.966)DES(1)EDEEDDYQQK;KS(0.171)LDS(0.829)DES(1)EDEEDDYQQK;KS(0.006)LDS(0.994)DES(1)EDEEDDYQQK;KS(0.045)LDS(0.955)DES(1)EDEEDDYQQK;KS(0.005)LDS(0.995)DES(1)EDEEDDYQQK;KS(0.052)LDS(0.948)DES(1)EDEEDDYQQK ;;;;; 236.64 1.48E-45 15849200000 7756090 4278190 2609510 16632500 7366970 6137330 13324100 10925200 4506390 21581000 TRUE FALSE FALSE 9481405.462 4778487.105 3574876.34 17541091.36 6633488.6 6458671.109 10477297.19 8245777.57 5410781.138 16201253.87 0.585226646 0.294945511 0.220654301 1.082699617 0.409442914 0.398652546 0.646696686 0.508959222 0.333972986 1 23.94960214 -10.02019212 4.037034597 1.000053244 0.50017065 0.297931268 0.231198507 81824611.68 157550258.9 61747.30797 0.058078773 9.55E-11 10.02019212 -0.499882594 KSLDS(ph)DES(ph)EDEEDDYQQK ddPTM_HeLa_A486_30min_R1 6 KSLDSDESEDEEDDYQQK 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 KS(0.008)LDS(0.992)DES(1)EDEEDDYQQK;KS(0.003)LDS(0.997)DES(1)EDEEDDYQQK;KS(0.008)LDS(0.992)DES(1)EDEEDDYQQK;KS(0.118)LDS(0.882)DES(1)EDEEDDYQQK;KS(0.023)LDS(0.977)DES(1)EDEEDDYQQK;KS(0.181)LDS(0.819)DES(1)EDEEDDYQQK ;;;;; 259.83 3.55E-58 24868900000 7372150 5707930 1796730 6476760 4611150 8565050 13345700 10718450 4194770 15636480 TRUE FALSE FALSE 6855400.355 5255612.839 2492471.974 15078224.6 4032776.57 7508381.214 10006464.7 8278092.917 4558376.041 11721003.63 0.584881685 0.448392732 0.212650047 1.286427773 0.3440641 0.640592005 0.853720809 0.706261441 0.388906632 1 23.48259277 -14 0.117656315 2.092013267 0.440728509 0.129709337 0.290564181 343.8637688 2.634720832 92.50267524 2.969234081 1.00E-14 14 -1.651284758 KSLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_HeLa_A485_30min_R1 4 KSLDSDESEDEEDDYQQKR 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 KS(0.004)LDS(0.996)DES(1)EDEEDDYQQKR;KS(0.003)LDS(0.997)DES(1)EDEEDDYQQKR;KSLDS(1)DES(1)EDEEDDYQQKR;KS(0.095)LDS(0.905)DES(1)EDEEDDYQQKR ;;; 149.99 5.61E-08 14729300000 6848480 4489470 2553190 13005000 7709620 6495660 14531600 14247900 4559590 17471900 TRUE FALSE FALSE 8371900.749 5014474.463 3497721.228 13715430.22 6942023.163 6835762.713 11426804.95 10753580.19 5474657.89 13116476.88 0.638273587 0.382303458 0.266666214 1.045664194 0.529259742 0.521158447 0.871179438 0.819852792 0.417387835 1 23.64487692 -14 0.057723319 2.39152224 4.99E-12 0.21990971 0.227050241 658.4274466 2.778611956 132.8625097 23.62703338 1.00E-14 14 -2.39152224 KSLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_HeLa_A486_30min_R1 5 KSLDSDESEDEEDDYQQKR 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 KS(0.015)LDS(0.985)DES(1)EDEEDDYQQKR;KS(0.063)LDS(0.937)DES(1)EDEEDDYQQKR;KS(0.012)LDS(0.988)DES(1)EDEEDDYQQKR;KSLDS(1)DES(1)EDEEDDYQQKR;KS(0.007)LDS(0.993)DES(1)EDEEDDYQQKR ;;;; 156.43 1.97E-08 6843680000 6620600 5318000 2034410 5607050 4893930 7516620 12656400 10646200 3889450 14169300 TRUE FALSE FALSE 6156530.129 4896582.312 2822188.035 13053495.76 4280087.665 6589295.848 9489634.854 8222292.665 4226590.658 10621215.05 0.579644617 0.461019035 0.265712352 1.229002115 0.402975332 0.620390023 0.893460382 0.774138611 0.397938526 1 23.34044548 -14 0.051478221 2.270729792 2.33E-16 0.144706825 0.268780276 1071.381073 4.062779674 189.7400842 40.54017182 1.00E-14 14 -2.270729792 KSLS(ph)DS(ph)ESDDSK ddPTM_HeLa_A485_30min_R1 2 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 KS(0.046)LS(0.955)DS(0.765)ES(0.089)DDS(0.145)K;KS(0.008)LS(0.987)DS(0.972)ES(0.02)DDS(0.013)K ; 189.04 1.23E-15 0 613530 354750 236960 1342890 642520 483430 1024240 794980 384240 1676530 TRUE FALSE FALSE 750007.6318 396234.9266 324621.3647 1416248.68 578548.4528 508741.6473 805402.7567 600009.9085 461353.4435 1258601.925 0.595905359 0.314821485 0.25792219 1.125255454 0.459675487 0.404211719 0.63991858 0.476727309 0.366560256 1 20.26339062 -10.35377351 3.901625956 1.00142161 0.517691933 0.28119303 0.23229064 135291501.8 152946219.1 2041996.236 0.058951879 4.43E-11 10.35377351 -0.483729677 KSLS(ph)DS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 KS(0.489)LS(0.848)DS(0.597)ES(0.004)DDS(0.063)K 105.14 0.00020906 0 675690 552860 162580 610340 429660 796680 1202900 1045100 415320 1550800 TRUE FALSE FALSE 628327.6203 509049.3601 225535.33 1420902.365 375768.0364 698393.7216 901921.697 807153.5444 451320.272 1162469.586 0.540511019 0.437903379 0.194013962 1.222313583 0.323249779 0.600784511 0.77586692 0.694343795 0.388242649 1 20.14876154 -14 0.154842208 2.420733725 0.468119374 0.171479193 0.273074586 246.5476328 2.229411784 109.1597651 1.257740829 1.00E-14 14 -1.952614351 KSLS(ph)DSESDDS(ph)K ddPTM_HeLa_A486_30min_R1 2 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 KS(0.267)LS(0.732)DS(0.103)ES(0.001)DDS(0.897)K;KS(0.027)LS(0.873)DS(0.137)ES(0.008)DDS(0.955)K ; 146.2 3.57E-06 262490000 1077180 930410 327270 1052280 831560 1437550 2054390 1702900 779840 2745200 TRUE FALSE FALSE 1001675.245 856680.9231 453997.7086 2449761.019 727257.9908 1260199.697 1540359.893 1315186.844 847437.1591 2057784.052 0.486773743 0.416312354 0.220624564 1.190484987 0.353418032 0.612406193 0.748552741 0.639127727 0.411820258 1 20.97266016 -14 0.141602614 2.358742276 0.432481561 0.201729451 0.255612971 235.6967185 2.032387114 92.05828399 1.523443492 1.00E-14 14 -1.926260715 KSLS(ph)DSESDDSK ddPTM_HeLa_A485_30min_R1 3 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 KSLS(0.988)DS(0.012)ESDDSK;KS(0.144)LS(0.428)DS(0.428)ESDDSK;KS(0.198)LS(0.781)DS(0.021)ESDDSK ;; 212.59 5.45E-18 7543040000 4579860 3018859 2007925 7792300 4183370 4202600 7798120 6436990 3166070 9816430 TRUE FALSE FALSE 5598634.057 3371888.299 2750740.014 8217973.618 3766858.994 4422641.638 6131987.957 4858308.11 3801471.208 7369374.659 0.759716301 0.457554196 0.373266409 1.115152099 0.511150426 0.600137982 0.832090678 0.659256495 0.51584719 1 22.81311077 -11.26042695 2.230031166 2.341920621 0.647680105 0.212635575 0.203704377 17210644.22 2520874.326 116575983.1 0.053883607 5.49E-12 11.26042695 -1.694240517 KSLS(ph)DSESDDSK ddPTM_HeLa_A486_30min_R1 3 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 KS(0.114)LS(0.526)DS(0.359)ES(0.001)DDSK;KS(0.023)LS(0.951)DS(0.022)ES(0.003)DDSK;KS(0.01)LS(0.974)DS(0.01)ES(0.006)DDS(0.001)K ;; 154.34 4.35E-08 2814790000 1675120 1497610 879570 924710 1369480 1772080 2328610 2124570 1250140 2607510 TRUE FALSE FALSE 1557702.738 1378933.929 1220163.06 2152771.612 1197707.049 1553458.787 1745967.148 1640851.79 1358503.142 1954572.524 0.796953154 0.705491309 0.624260827 1.10140278 0.612771864 0.79478186 0.893273146 0.83949394 0.695038493 1 20.89842169 -14 0.226319961 2.091527569 0.763021826 0.17555971 0.136688811 283.9186149 2.843171764 142.1950686 0.242546347 1.00E-14 14 -1.328505743 KSLS(ph)DSESDDSKSK ddPTM_HeLa_A485_30min_R1 2 KSLSDSESDDSKSK 14 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 KSLS(0.815)DS(0.183)ES(0.002)DDSKSK;KSLS(0.995)DS(0.005)ESDDSKSK ; 176.11 4.87E-13 923620000 469770 655400 223433 409780 893900 1400350 2749200 5090000 453500 750660 TRUE FALSE FALSE 574268.7158 732043.3288 306090.1645 432165.2438 804900.1773 1473670.161 2161810.961 3841669.519 544513.2903 563534.2769 1.019048422 1.299021832 0.543161573 0.766883687 1.428307399 2.615049734 3.836165873 6.817100001 0.966246975 1 19.10414384 -6.353731371 2.420410507 3.610267003 0.934339559 0.285098736 1.569065284 0.319084699 3.662460902 0.604498356 0.525792188 4.43E-07 6.353731371 -2.675927444 KSLS(ph)PGVSR ddPTM_HeLa_A485_30min_R1 2 KSLSPGVSR 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KS(0.011)LS(0.989)PGVSR;KSLS(1)PGVSR ; 122.52 0.00020058 2248600000 4196500 6361100 4849000 3104400 6609100 6616500 7159900 9930900 5496000 4248400 TRUE FALSE FALSE 5129996.947 7104975.311 6642846.884 3273985.511 5951074.798 6962929.709 5630128.874 7495331.204 6598996.788 3189352.066 1.608476217 2.227717469 2.082820192 1.02653625 1.865919684 2.183180021 1.765289237 2.350110947 2.069071288 1 21.60483193 -5.996620359 24.99956162 1.959303076 1.75247786 0.003169776 0.453377429 395.6352261 2926508.343 0.139923514 0.157884637 1.01E-06 5.996620359 -0.206825216 KSLS(ph)PGVSR ddPTM_HeLa_A486_30min_R1 1 KSLSPGVSR 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KSLS(1)PGVSR 161.87 7.45E-06 1240800000 2136400 2090000 1617700 742050 2818600 2098300 2447100 2656900 1639000 2306600 TRUE FALSE FALSE 1986649.392 1924380.788 2244116.764 1727529.901 2465064.906 1839433.08 1834809.697 2051981.87 1781069.84 1729012.347 1.149008216 1.112994243 1.297918299 0.999142606 1.425706942 1.063863473 1.061189471 1.186794226 1.030108225 1 20.72151674 -7.692573361 0.71676152 1.000199711 1.179396049 0.193691817 0.117954365 1.10315144 1.251032211 0.109376087 0.046166436 2.03E-08 7.692573361 0.179196338 KSLSDS(ph)ESDDSK ddPTM_HeLa_A485_30min_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 KS(0.001)LS(0.023)DS(0.953)ES(0.023)DDSK 123.14 2.82E-05 6491900000 295380 230740 155740 505540 286820 322080 505570 468710 223290 686090 TRUE FALSE FALSE 361086.262 257723.0358 213354.7069 533156.3701 258263.1937 338943.6108 397550.8394 353758.1376 268102.2549 515060.3896 0.701056166 0.500374405 0.414232411 1.035133706 0.501423132 0.658065768 0.771852869 0.686828467 0.520525865 1 18.97438207 -11.21767505 2.327224534 2.139363878 0.645187916 0.287573047 0.168417077 9641918.403 1512890.464 58046166.43 0.041621416 6.06E-12 11.21767505 -1.494175962 KSLSDS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 2 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 KS(0.002)LS(0.106)DS(0.892)ESDDSK;KS(0.012)LS(0.006)DS(0.972)ES(0.011)DDSK ; 194.53 7.05E-14 1586920000 1230600 1005910 513840 808780 1020880 1493510 2056580 1802070 906910 2391080 TRUE FALSE FALSE 1144341.295 926198.0281 712812.6091 1882880.713 892831.7111 1309255.921 1542001.932 1391778 985521.689 1792338.005 0.638462886 0.516754109 0.39769988 1.050516537 0.498138023 0.730473782 0.860329875 0.776515365 0.549852587 1 20.7734113 -13.99999985 0.047647996 2.292621097 1.03E-12 0.249283949 0.181199531 867.1717561 3.056587249 147.6056674 35.31313777 1.00E-14 13.99999985 -2.292621097 KSLSGS(ph)PLK ddPTM_HeLa_A485_30min_R1 2 KSLSGSPLK 9 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 KSLS(0.004)GS(0.996)PLK;KS(0.001)LS(0.068)GS(0.93)PLK ; 103.14 0.00083231 1147760000 2098140 1845800 1306310 2704000 2921100 2049150 3322500 3595100 2243510 5271600 TRUE FALSE FALSE 2564864.005 2061650.254 1789568.429 2851712.673 2630265.027 2156440.325 2612620.733 2713396.088 2693761.878 3957487.137 0.648104192 0.520949325 0.452198167 0.720586719 0.664630089 0.544901411 0.66017163 0.685636111 0.680674829 1 21.91615323 -14 0.172577375 2.552680511 0.527270259 0.729977909 0.07279247 69.91442516 0.662866875 36.94782768 0.263243356 1.00E-14 14 -2.025410252 KSLSGS(ph)PLK ddPTM_HeLa_A486_30min_R1 1 KSLSGSPLK 9 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 KSLS(0.003)GS(0.997)PLK 69.229 0.0090721 595340000 1023800 857520 407080 401610 766120 1021800 1273900 1218600 725700 1496900 TRUE FALSE FALSE 952036.9069 789566.9922 564712.278 934968.3762 670026.0858 895740.7049 955156.7461 941151.3819 788604.2603 1122066.497 0.848467457 0.703672193 0.503278798 0.833255764 0.597135809 0.798295562 0.851247897 0.838766138 0.702814194 1 20.09772675 -6.464897515 8.056553023 0.833451039 0.6943425 0.27461734 0.115865263 0.464432342 59.71219475 0.039962192 0.035029396 3.43E-07 6.464897515 -0.139108539 KSMS(ph)EDGGLQESNPCADDFVSASTADVSHTNLGTIR ddPTM_HeLa_A485_30min_R1 1 KSMSEDGGLQESNPCADDFVSASTADVSHTNLGTIR 36 1 A0A1W2PRP5;H7C0I1;B8ZZW5;Q8NBF6-2;Q8NBF6 A0A1W2PRP5 AVL9 Late secretory pathway protein AVL9 homolog 1 0 KS(0.439)MS(0.546)EDGGLQES(0.015)NPCADDFVSASTADVSHTNLGTIR 73.027 0.00063466 166030000 13873 17644 18480 15329 23463 17730 17464 22154 16355 20145 TRUE FALSE FALSE 16959.00099 19707.31232 25316.52102 16166.38445 21126.94134 18658.31538 13732.67373 16720.69676 19637.29848 15123.22224 1.121388069 1.303115963 1.674016332 1.06897751 1.396986766 1.233752641 0.908052101 1.105630566 1.298486405 1 13.88447794 -6.532800194 24.74650424 1.084567261 1.318515167 0.278345541 0.178442827 254.5603254 634928.3096 0.067985735 0.052726556 2.93E-07 6.532800194 0.233947906 KSNFAEALAAHK ddPTM_HeLa_A485_30min_R1 2 KSNFAEALAAHK 12 1 H7BZ94;P07237;I3L514;I3L0S0;I3NI03;I3L3U6;I3L312;I3L1Y5;I3L3P5 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ; ; 89.013 0.0049291 17693000 54915 53428 47209 63408 68953 68482 91128 97215 55958 89367 FALSE FALSE TRUE 67130.6523 59675.93984 64673.57363 66871.81848 62087.79721 72067.61163 71657.75835 73372.86882 67188.25732 67089.45158 1.000614116 0.889498102 0.963990197 0.996756076 0.925447977 1.07420183 1.068092773 1.093657305 1.001472746 1 16.03379833 -6.264698633 24.99952823 1.054626505 0.954397986 0.553124682 0.041194131 203.1156227 1557955.206 0.013838613 0.012704928 5.44E-07 6.264698633 -0.100228519 KSNLDEEVNVIPPHT(ph)PVR ddPTM_HeLa_A485_30min_R1 3 KSNLDEEVNVIPPHTPVR 18 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR ;; 139.36 1.38E-06 1432750000 1447850 1554260 1259230 1504580 1988440 1669140 2202550 2479190 1427600 1941080 TRUE FALSE FALSE 1769919.237 1736017.187 1725071.578 1586771.396 1790463.932 1756533.589 1731957.199 1871164.765 1714106.225 1457204.479 1.214599092 1.191333963 1.183822588 1.088914712 1.228697796 1.205413252 1.188547815 1.284078379 1.176297665 1 20.4747719 -8.039091527 23.80714121 0.999999999 1.196979027 0.625125285 0.045747044 2944.721944 1793362.514 0.045697764 0.011799112 9.14E-09 8.039091527 0.196979029 KSNLDEEVNVIPPHT(ph)PVR ddPTM_HeLa_A486_30min_R1 4 KSNLDEEVNVIPPHTPVR 18 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR ;;; 127.05 9.30E-06 1496560000 1390060 1396150 1037850 519564 1553700 1428400 1625530 1673440 1158690 1608550 TRUE FALSE FALSE 1292623.972 1285513.989 1439733.315 1209571.249 1358820.458 1252178.531 1218805.201 1292434.243 1259126.182 1205758.61 1.072042083 1.066145395 1.194047716 1.003162025 1.126942364 1.038498519 1.010820234 1.071884731 1.044260577 1 20.20150968 -6.340982059 9.30132498 1.036046835 1.091656798 0.268500018 0.048875241 0.653472962 72.64949309 0.016709706 0.014728108 4.56E-07 6.340982059 0.055609963 KSPGGGGGGGSGNDNNQAATKS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KSPGGGGGGGSGNDNNQAATKSPR 24 2 Q9NS37;E9PIM0;J3KN20 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 KSPGGGGGGGSGNDNNQAAT(0.013)KS(0.987)PR 141.64 1.91E-09 67152000 74806 72792 50150 79438 99599 101260 134580 142980 70357 109200 TRUE FALSE FALSE 91446.33662 81304.39119 68702.57192 83777.49679 89682.57385 106561.817 105825.8836 107913.9308 84477.00455 81978.44968 1.115492388 0.991777614 0.838056492 1.021945366 1.093977432 1.299875973 1.290898815 1.3163695 1.030478191 1 16.32295709 -5.929842777 3.010557355 1.213147978 0.979614443 0.358209588 0.120097475 0.244566851 4.496997723 0.040076554 0.045456445 1.18E-06 5.929842777 -0.233533535 KSPS(ph)GPVKSPPLSPVGTTPVK ddPTM_HeLa_A485_30min_R1 1 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 KS(0.057)PS(0.564)GPVKS(0.373)PPLS(0.006)PVGTTPVK 101.77 0.00013788 1198700000 871650 667820 390910 1173600 918260 931340 1509500 1569400 678170 1453200 TRUE FALSE FALSE 1065545.535 745915.7397 535523.8761 1237710.796 826834.8102 980103.5223 1186982.994 1184502.189 814272.4985 1090943.984 0.976718833 0.683734225 0.490881185 1.134531941 0.757907667 0.898399493 1.088032943 1.085758945 0.746392583 1 20.0571456 -5.267971684 24.99862983 0.956798735 0.713773695 0.308786222 0.165611327 627.2415173 2400405.475 0.046693135 0.071145199 5.40E-06 5.267971684 -0.24302504 KSPS(ph)LESLSRPPSLGFGDTR ddPTM_HeLa_A485_30min_R1 1 KSPSLESLSRPPSLGFGDTR 20 2 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 KS(0.032)PS(0.963)LES(0.002)LS(0.002)RPPSLGFGDTR 46.839 0.021413 1214500000 309040 263760 212970 293800 332630 353840 439730 478690 262710 442980 TRUE FALSE FALSE 377784.8818 294604.4376 291756.4654 309849.5501 299512.1893 372366.5153 345778.0932 361290.5269 315433.4873 332553.2384 1.13601324 0.885886539 0.877322581 0.931729162 0.900644332 1.119720009 1.039767632 1.086414099 0.948520269 1 18.34322579 -6.248503694 24.97052544 1.044340488 0.938318101 0.241971239 0.081016288 1003.993057 1938068.723 0.026496594 0.026332927 5.64E-07 6.248503694 -0.106022386 KSPS(ph)LESLSRPPSLGFGDTR ddPTM_HeLa_A486_30min_R1 2 KSPSLESLSRPPSLGFGDTR 20 2 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 KS(0.061)PS(0.938)LESLSRPPSLGFGDTR;KS(0.181)PS(0.818)LESLSRPPSLGFGDTR ; 122.79 4.63E-07 2565470000 994360 1150510 838330 544073 1413620 1292190 1554330 1545830 1182300 1549300 TRUE FALSE FALSE 924660.4989 1059339.398 1162953.827 1266629.44 1236310.598 1132772.736 1165420.194 1193878.254 1284782.716 1161345.196 0.796197808 0.912165824 1.001385145 1.090657149 1.064550491 0.9753971 1.00350886 1.028013254 1.106288398 1 20.14736543 -4.523337721 1.946010708 1.036999576 0.781906946 0.794281613 0.039093109 0.211957779 1.251361822 0.011471921 0.08056719 3.00E-05 4.523337721 -0.255092631 KSPSGPVKS(ph)PPLS(ph)PVGTTPVK ddPTM_HeLa_A485_30min_R1 1 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 2 0 KS(0.27)PS(0.307)GPVKS(0.429)PPLS(0.993)PVGT(0.001)T(0.001)PVK 54.441 0.019566 340870000 331930 292280 156610 435790 360090 367550 578790 587200 257190 531040 TRUE FALSE FALSE 405766.6834 326459.6035 214546.5561 459596.1042 324238.1752 386794.3497 455126.7882 443188.2793 308805.6739 398661.5011 1.017822595 0.818889215 0.538167231 1.152847975 0.813316998 0.970232512 1.141637171 1.11169069 0.774606209 1 18.60480476 -5.280323013 24.98020142 0.99707799 0.794352573 0.251232507 0.160767105 1118.556531 1479679.23 0.045684593 0.067884132 5.24E-06 5.280323013 -0.202725417 KSPSGPVKS(ph)PPLS(ph)PVGTTPVK ddPTM_HeLa_A486_30min_R1 1 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 2 0 KS(0.056)PS(0.072)GPVKS(0.875)PPLS(0.99)PVGT(0.005)T(0.002)PVK 60.343 0.012658 315800000 605140 478240 187420 338780 454560 594890 798820 696270 343850 886100 TRUE FALSE FALSE 562722.8109 440342.5207 259994.0433 788696.961 397544.8462 521498.5202 598946.7869 537744.5205 373655.1949 664214.7925 0.847200058 0.662951993 0.391430673 1.187412521 0.598518507 0.78513536 0.901736597 0.809594316 0.562551751 1 19.34129033 -11.38657878 2.259059012 2.851313294 0.752246341 0.117604726 0.205640794 11622265.02 1661535.711 109358301.6 0.052724263 4.11E-12 11.38657878 -2.099066953 KSPSGPVKS(ph)PPLSPVGTTPVK ddPTM_HeLa_A485_30min_R1 1 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 KS(0.005)PS(0.005)GPVKS(0.988)PPLS(0.003)PVGTTPVK 184.29 1.54E-19 1363600000 786830 575040 351910 1089800 799150 895090 1429100 1510600 637130 1441300 TRUE FALSE FALSE 961857.619 642285.9258 482096.1532 1149333.014 719583.82 941955.5283 1123761.11 1140122.981 764996.1469 1082010.435 0.888954106 0.593604188 0.445555918 1.062219898 0.665043327 0.870560484 1.038586204 1.053707935 0.70701365 1 20.04528298 -5.843533169 1.072920633 0.945056196 0.66958499 0.237013339 0.180593749 0.70808174 1.74403547 0.082689402 0.114343352 1.43E-06 5.843533169 -0.275471206 KSPSGPVKS(ph)PPLSPVGTTPVK ddPTM_HeLa_A486_30min_R1 1 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 KS(0.016)PS(0.09)GPVKS(0.888)PPLS(0.006)PVGTTPVK 150.48 5.76E-10 991910000 1187600 996860 385080 527810 801290 1181800 1689400 1422300 750670 1769700 TRUE FALSE FALSE 1104355.373 917865.1831 534193.2888 1228768.354 700784.7365 1036001.532 1266694.251 1098473.339 815738.68 1326555.601 0.832498368 0.691916104 0.40269197 0.926284848 0.528273927 0.780971058 0.954874602 0.828064302 0.614929883 1 20.33925372 -6.512152771 24.28625116 0.839822605 0.673756667 0.196497648 0.165393236 621.1067739 1406346.387 0.059223896 0.049020665 3.08E-07 6.512152771 -0.166065938 KSPTS(ph)LKR ddPTM_HeLa_A485_30min_R1 1 KSPTSLKR 8 2 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 KS(0.295)PT(0.166)S(0.539)LKR 66.56 0.014539 816010000 872920 617760 346680 1226500 549930 666200 898330 914750 759320 1646000 TRUE FALSE FALSE 1067098.042 690001.6582 474931.3586 1293500.589 495177.0383 701081.2019 706394.4568 690406.1282 911708.5591 1235682.492 0.863569767 0.558397212 0.384347404 1.046790415 0.400731613 0.567363547 0.571663402 0.558724537 0.737817817 1 20.23687666 -8.077987958 4.040390868 0.999851278 0.613562117 0.272024413 0.189266233 0.44928531 17.96204075 0.175617943 0.046110569 8.36E-09 8.077987958 -0.386289161 KSPTS(ph)LKR ddPTM_HeLa_A486_30min_R1 1 KSPTSLKR 8 2 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 KS(0.313)PT(0.079)S(0.608)LKR 75.416 0.008967 634380000 1126600 689890 621390 503530 579170 1507700 1180800 851650 1021400 1345400 TRUE FALSE FALSE 1047631.158 635220.6039 862008.8494 1172243.287 506525.0981 1321695.303 885351.3508 657747.8864 1109935.774 1008503.083 1.038798171 0.629864811 0.854740917 1.162359647 0.502254387 1.310551574 0.877886608 0.652202157 1.100577473 1 19.94378406 -5.009572804 24.8956133 0.929903491 0.811324343 0.033274522 0.240904837 1592.323123 4141130.399 0.061390375 0.117315692 9.78E-06 5.009572804 -0.118579148 KSPVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_A485_30min_R1 1 KSPVGKSPPSTGSTYGSSQK 20 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.044)PVGKS(0.785)PPS(0.162)T(0.007)GS(0.002)TYGSSQK 179.64 3.29E-19 1023300000 1362700 885880 555760 1428800 1130200 1420900 2010600 1730000 1056700 2213300 TRUE FALSE FALSE 1665827.914 989475.9599 761358.7511 1506851.726 1017673.32 1495296.127 1581018.885 1305714.787 1268769.997 1661565.043 1.002565576 0.595508412 0.458217844 0.906886993 0.612478774 0.899932346 0.951523921 0.785834291 0.763599356 1 20.66411134 -6.27568632 24.59148386 0.871251756 0.70486589 0.209484667 0.159215209 1083.958549 1871003.005 0.056091372 0.049709995 5.30E-07 6.27568632 -0.166385866 KSPVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_A486_30min_R1 1 KSPVGKSPPSTGSTYGSSQK 20 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KSPVGKS(0.906)PPS(0.072)T(0.022)GSTYGSSQK 98.967 8.00E-05 0 156770 100250 39263 46936 108400 157010 185390 159640 95892 184900 TRUE FALSE FALSE 145781.2326 92305.8249 54466.6851 109269.38 94803.46121 137639.7026 139003.4611 123293.4569 104203.9958 138599.8365 1.051813885 0.665987978 0.39297799 0.788380295 0.684008464 0.993072619 1.002912158 0.889564231 0.751833468 1 17.08056603 -6.253088503 24.412083 0.92528899 0.699825102 0.285266312 0.16578697 602.7546775 1762030.875 0.057149873 0.0562075 5.58E-07 6.253088503 -0.225463888 KSPVGKSPPS(ph)TGSTYGSSQK ddPTM_HeLa_A486_30min_R1 1 KSPVGKSPPSTGSTYGSSQK 20 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.018)PVGKS(0.055)PPS(0.447)T(0.179)GS(0.297)T(0.003)YGSSQK 148.53 7.34E-10 901400000 1426400 1297100 554180 526740 1066000 1682300 1955500 1700500 1129300 2098600 TRUE FALSE FALSE 1326416.726 1194313.072 768773.3375 1226277.34 932292.3399 1474754.93 1466213.217 1313333.272 1227188.633 1573096.9 0.843188189 0.759211382 0.488700561 0.779530708 0.592647751 0.937485116 0.932055245 0.834871184 0.780110007 1 20.58517611 -6.270102521 24.94410966 0.888780698 0.6898488 0.469120657 0.108446185 599.2998427 1725581.618 0.038330172 0.034325122 5.37E-07 6.270102521 -0.198931898 KSQAAPGS(ph)SPCR ddPTM_HeLa_A485_30min_R1 2 KSQAAPGSSPCR 12 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KSQAAPGS(0.612)S(0.388)PCR;KSQAAPGS(0.662)S(0.338)PCR ; 105.63 0.00032892 555560000 694390 851580 650250 637680 1137080 827740 1010120 1231190 832480 883600 TRUE FALSE FALSE 848854.6599 951164.8732 890804.5342 672514.8437 1023868.323 871079.1865 794299.6101 929238.7221 999551.1 663334.7815 1.279677598 1.433913764 1.342918477 1.01383926 1.543516715 1.313181836 1.197433984 1.400859337 1.506857665 1 19.33937765 -9.760756979 6.56479112 1 1.333595861 0.324070642 0.145900527 5.34E-09 9.53E-10 0.139968997 0.033947468 1.73E-10 9.760756979 0.333595861 KSQAAPGS(ph)SPCR ddPTM_HeLa_A486_30min_R1 2 KSQAAPGSSPCR 12 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KSQAAPGS(0.643)S(0.357)PCR;KSQAAPGS(0.5)S(0.5)PCR ; 81.148 0.0032401 314810000 497460 491270 366960 197700 570770 499420 583490 573490 397590 466810 TRUE FALSE FALSE 462590.6229 452339.976 509056.7395 460255.5912 499178.7044 437806.6381 437494.6305 442918.8462 432053.4213 349917.7376 1.32199821 1.292703763 1.454789754 1.315325123 1.426560162 1.251170178 1.250278518 1.265779921 1.234728552 1 18.41665627 -8.519316024 0.410139761 0.967519174 1.365563083 0.768674469 0.056408774 1.11570023 0.356547455 0.131073252 0.041395384 3.02E-09 8.519316024 0.39804391 KSQAAPGSS(ph)PCR ddPTM_HeLa_A485_30min_R1 2 KSQAAPGSSPCR 12 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KSQAAPGS(0.216)S(0.784)PCR;KSQAAPGS(0.136)S(0.864)PCR ; 134.49 1.08E-05 496060000 754770 938480 700830 703110 1189150 856970 1064490 1335930 876140 970220 TRUE FALSE FALSE 922665.9826 1048227.072 960096.181 741519.1189 1070754.051 901839.6241 837053.0154 1008291.073 1051973.262 728362.0096 1.266768407 1.439156709 1.31815796 1.01806397 1.47008498 1.23817499 1.149226627 1.384326831 1.444300015 1 19.47429615 -10.97096264 2.851409292 0.752034867 1.300058045 0.310224966 0.135536219 43542911.48 47235606.04 71649479.5 0.033920015 1.07E-11 10.97096264 0.548023178 KSQAAPGSS(ph)PCR ddPTM_HeLa_A486_30min_R1 1 KSQAAPGSSPCR 12 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KSQAAPGS(0.296)S(0.704)PCR 74.296 0.0056816 333450000 214230 226090 173980 92688 243060 196460 247940 247150 157470 193460 TRUE FALSE FALSE 199213.5833 208173.805 241349.7153 215782.3482 212573.1484 172222.7627 185902.7896 190879.3402 171119.6264 145016.3568 1.373731817 1.435519479 1.664293054 1.487986273 1.465856356 1.187609222 1.281943594 1.316260762 1.180002244 1 17.14585611 -6.216607059 5.267115842 1.218150485 1.49525152 0.654163714 0.105448104 0.139980361 9.557043961 0.035905285 0.035314686 6.07E-07 6.216607059 0.277101035 KSREDLS(ph)AQPVQTK ddPTM_HeLa_A485_30min_R1 2 KSREDLSAQPVQTK 14 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 KS(0.083)REDLS(0.917)AQPVQTK;KS(0.235)REDLS(0.765)AQPVQTK ; 72.11 0.0041624 2584900000 1828210 3673500 4203600 416100 3585100 2779200 1905210 2613800 3378400 658680 TRUE FALSE FALSE 2234889.007 4103083.87 5758686.566 438830.4894 3228154.856 2924714.615 1498146.319 1972761.452 4056413.891 494483.1981 4.519645998 8.297721511 11.64586904 0.887452781 6.528340838 5.91468957 3.029721384 3.989541928 8.203340188 1 18.91556198 -5.26051255 24.99923124 4.463398155 8.168742877 0.305664352 2.698941412 108.4324169 2924691.542 0.732772995 1.181078227 5.49E-06 5.26051255 3.705344722 KSRVS(ph)VS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 KSRVSVSPGR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KS(0.011)RVS(0.989)VS(1)PGR 81.632 0.024202 3565900000 4520800 6177000 4472700 4384800 7291900 7129500 8959700 10650000 4968600 6353000 TRUE FALSE FALSE 5526436.363 6899346.417 6127337.855 4624330.521 6565892.833 7502789.596 7045386.901 8038070.801 5965752.445 4769314.018 1.158748688 1.446611901 1.284741963 0.969600765 1.376695434 1.573138101 1.477232758 1.685372523 1.250861743 1 22.18535034 -5.987400898 24.98472496 1.448458598 1.228547479 0.127129873 0.208637474 371.0147808 735738.6473 0.062859144 0.071233066 1.03E-06 5.987400898 -0.219911119 KSS(ph)FNVSDVARPEAAGS(ph)PPEEGGCTEGTPAKDHR ddPTM_HeLa_A485_30min_R1 1 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAKDHR 34 3 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 2 0 KS(0.463)S(0.493)FNVS(0.048)DVARPEAAGS(0.865)PPEEGGCT(0.033)EGT(0.097)PAKDHR 54.632 0.0090392 125940000 74719 79504 52094 71243 91397 100280 126950 169170 68899 88423 TRUE FALSE FALSE 91339.98377 88801.30121 71365.73841 75134.82469 82297.19377 105530.5057 99826.09541 127680.7923 82726.39732 66380.7734 1.376000596 1.337756351 1.075096519 1.131876308 1.239774554 1.589775176 1.503840499 1.92346045 1.246240336 1 16.01847782 -6.247692482 20.83281212 1.513578089 1.223679855 0.151307764 0.240024021 121.3284436 183866.3891 0.076905141 0.076266283 5.65E-07 6.247692482 -0.289898234 KSS(ph)FNVSDVARPEAAGSPPEEGGCTEGTPAKDHR ddPTM_HeLa_A485_30min_R1 1 KSSFNVSDVARPEAAGSPPEEGGCTEGTPAKDHR 34 3 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 KS(0.21)S(0.79)FNVSDVARPEAAGSPPEEGGCTEGTPAKDHR 222.76 3.01E-39 1468600000 289310 249400 188050 244970 420620 383180 559710 719420 276460 423380 TRUE FALSE FALSE 353666.0114 278565.1605 257617.5204 258352.0908 378741.5959 403242.7123 440123.3861 542981.117 331942.9862 317839.1577 1.112720075 0.876434365 0.810527948 0.812839087 1.191614018 1.268700544 1.384736196 1.708351862 1.044374106 1 18.27793735 -5.933468194 3.421577951 1.32685438 0.895231691 0.433848799 0.200927077 0.202942449 4.817696365 0.065427287 0.073962067 1.17E-06 5.933468194 -0.431622688 KSS(ph)GTGTEPVAK ddPTM_HeLa_A486_30min_R1 1 KSSGTGTEPVAK 12 1 Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;B8ZZI9;A0A0U1RR74 Q6ULP2-7 AFTPH Aftiphilin 1 0 KS(0.014)S(0.986)GTGTEPVAK 173.51 5.19E-11 164250000 275480 231030 114790 117150 220600 274440 308670 301490 221090 388020 TRUE FALSE FALSE 256170.2746 212722.3414 159239.7622 272731.1204 192930.291 240582.3831 231437.5012 232847.3085 240254.2592 290857.2664 0.88074222 0.731363339 0.547484215 0.937680271 0.663316043 0.827149296 0.795708163 0.800555239 0.826021169 1 18.14995182 -8.984200035 0.386842505 1.041427155 0.745303037 0.314476554 0.102766158 5.29130065 1.092030096 0.443391733 0.07556775 1.04E-09 8.984200035 -0.296124118 KSS(ph)ISSISGR ddPTM_HeLa_A485_30min_R1 2 KSSISSISGR 10 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KS(0.046)S(0.932)IS(0.011)S(0.011)ISGR;KS(0.002)S(0.997)IS(0.001)SISGR ; 117.27 0.00023518 1295250000 493340 459520 375690 572450 586580 413090 579180 445790 460550 675080 TRUE FALSE FALSE 603081.781 513256.8667 514673.3648 603721.494 528178.0356 434718.7536 455433.4615 336459.3035 552978.1606 506794.9799 1.189991624 1.012750495 1.015545507 1.191253895 1.042192714 0.857780307 0.898654248 0.663896283 1.091127936 1 18.95104271 -6.163415904 4.355531253 0.88117901 1.092217791 0.388813192 0.117655631 0.223356646 7.294171633 0.038439485 0.038360214 6.86E-07 6.163415904 0.211038781 KSS(ph)ISSISGR ddPTM_HeLa_A486_30min_R1 1 KSSISSISGR 10 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KS(0.012)S(0.925)IS(0.032)S(0.032)ISGR 77.192 0.0055361 522940000 408920 429360 248470 100300 425990 443630 449230 460830 343330 506830 TRUE FALSE FALSE 380256.8197 395335.9499 344684.2383 233503.4689 372558.362 388899.4411 336827.9025 355909.0688 373090.1208 379916.4691 1.000895856 1.040586503 0.907263218 0.614617917 0.980632303 1.023644598 0.886584104 0.93680874 0.982031976 1 18.53532273 KSS(ph)LGNDETDKEK ddPTM_HeLa_A485_30min_R1 3 KSSLGNDETDKEK 13 2 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 KS(0.008)S(0.992)LGNDETDKEK;KSS(1)LGNDETDKEK;KS(0.002)S(0.998)LGNDETDKEK ;; 258.82 1.18E-41 1799340000 1282310 648099 333976 2509360 952360 1125530 2425730 2424420 909900 4284660 TRUE FALSE FALSE 1567555.436 723888.5403 457527.6203 2646439.983 857539.6945 1184461.01 1907452.969 1829827.194 1092508.584 3216573.115 0.487337107 0.225049615 0.142240703 0.822751384 0.266600405 0.36823693 0.593007807 0.56887474 0.339649852 1 21.61709305 -13.99999999 0.1926674 3.505066549 0.323258873 0.455491126 0.190344982 125.5763228 1.232335332 120.7704775 0.50194189 1.00E-14 13.99999999 -3.181807675 KSS(ph)LGNDETDKEK ddPTM_HeLa_A486_30min_R1 3 KSSLGNDETDKEK 13 2 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 KS(0.249)S(0.751)LGNDETDKEK;KS(0.08)S(0.92)LGNDETDKEK;KS(0.284)S(0.716)LGNDETDKEK ;; 194.37 5.06E-18 1753730000 1448700 999070 293416 986760 694570 1419920 2144890 1772810 697020 2735070 TRUE FALSE FALSE 1347153.611 919900.0546 407034.5332 2297227.148 607450.554 1244744.707 1608215.836 1369179.863 757438.2548 2050190.67 0.657086988 0.448690001 0.198534965 1.120494392 0.296289786 0.607136071 0.784422571 0.667830502 0.369447713 1 20.96732666 -11.62778204 2.113005203 9.999948728 0.575682276 0.205726465 0.252083357 19877517.22 642996.7487 862318635.4 0.060948602 2.36E-12 11.62778204 -9.424266452 KSS(ph)LVTSK ddPTM_HeLa_A485_30min_R1 1 KSSLVTSK 8 1 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7 O43768-2 ENSA Alpha-endosulfine 1 0 KS(0.04)S(0.96)LVTSK 118.87 0.00048493 1075600000 804350 648310 355960 930680 597320 897030 1341500 1684000 939880 1719700 TRUE FALSE FALSE 983274.8825 724124.215 487644.4167 981520.6918 537848.7235 943997.1037 1054877.566 1270996.36 1128505.295 1291010.439 0.761632016 0.560897258 0.377723063 0.760273242 0.41661067 0.731207956 0.817094529 0.984497353 0.874125616 1 20.30006924 -6.745503037 2.041935043 0.942899764 0.573671514 0.6363078 0.123419701 0.203208196 1.734976075 0.059542705 0.038652951 1.80E-07 6.745503037 -0.36922825 KSS(ph)LVTSK ddPTM_HeLa_A486_30min_R1 2 KSSLVTSK 8 1 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-7 O43768-2 ENSA Alpha-endosulfine 1 0 KS(0.004)S(0.992)LVT(0.003)S(0.001)K;KS(0.005)S(0.995)LVTSK ; 105.56 0.0008383 1712670000 3503200 2335400 1372660 1556470 1983660 4317700 3916800 3582700 2951300 4955200 TRUE FALSE FALSE 3257643.771 2150334.399 1904190.713 3623540.82 1734850.866 3785026.073 2936775.212 2766997.42 3207121.06 3714385.667 0.877034337 0.578920605 0.512652935 0.97554243 0.467062664 1.019018059 0.790648973 0.744940797 0.863432435 1 21.82469219 -6.273409095 24.99234658 0.861856896 0.683375262 0.26667071 0.164996708 1186.460891 2477281.871 0.056239288 0.049972263 5.33E-07 6.273409095 -0.178481633 KSS(ph)PEMEDAR ddPTM_HeLa_A486_30min_R1 1 KSSPEMEDAR 10 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 KS(0.055)S(0.945)PEMEDAR 115.34 0.00028937 993640000 2865800 2801200 1426400 1329000 2767500 2990200 3415200 3551700 2258600 3943400 TRUE FALSE FALSE 2664922.219 2579222.71 1978740.28 3093979.164 2420374.344 2621299.526 2560680.838 2743055.443 2454377.267 2955946.973 0.901546017 0.872553782 0.669409938 1.046696437 0.818815211 0.886788413 0.866281047 0.927978569 0.830318436 1 21.49518896 -13.99999994 0.217802165 1.651300904 0.852314529 0.158034333 0.089793299 279.9765568 2.800369777 79.96864573 0.170656624 1.00E-14 13.99999994 -0.798986376 KSS(ph)PSTGSLDSGNESK ddPTM_HeLa_A486_30min_R1 1 KSSPSTGSLDSGNESK 16 1 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KS(0.007)S(0.985)PS(0.004)T(0.004)GSLDSGNESK 245.67 2.75E-41 133730000 140470 129980 47099 63484 109730 155540 203340 167440 98127 199320 TRUE FALSE FALSE 130623.7784 119679.9114 65336.99415 147793.9603 95966.64021 136351.0562 152462.1813 129317.5672 106632.7274 149408.9746 0.874269961 0.801022239 0.437303009 0.989190647 0.642308405 0.912602851 1.020435229 0.865527439 0.713696936 1 17.18890728 -6.287621419 23.70679514 0.901421919 0.747766588 0.193963638 0.156578997 697.7477221 631779.6954 0.054767138 0.04832006 5.16E-07 6.287621419 -0.153655332 KSS(ph)PSVKPAVDPAAAK ddPTM_HeLa_A486_30min_R1 1 KSSPSVKPAVDPAAAK 16 2 Q6FI81-3;Q6FI81;H3BPG7;H3BV90;H3BT65 Q6FI81-3 CIAPIN1 Anamorsin 1 0 KS(0.118)S(0.838)PS(0.044)VKPAVDPAAAK 163.68 4.71E-12 4124900000 5629000 5320100 1903300 3116200 4256700 7024100 8687500 8606900 3858600 9289800 TRUE FALSE FALSE 5234436.168 4898515.901 2640308.732 7254671.084 3722784.994 6157537.958 6513795.613 6647296.757 4193066.555 6963573.614 0.751688208 0.70344857 0.379160023 1.041802886 0.534608407 0.884249711 0.935409888 0.954581243 0.602142921 1 22.73139644 -6.297996111 23.55828158 0.876196509 0.686474188 0.210944897 0.18666886 485.7726574 313044.772 0.063692495 0.056174003 5.04E-07 6.297996111 -0.189722321 KSS(ph)SLESLQTAVAEVTLNGDIPFHRPR ddPTM_HeLa_A486_30min_R1 1 KSSSLESLQTAVAEVTLNGDIPFHRPR 27 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 KS(0.183)S(0.271)S(0.271)LES(0.271)LQT(0.004)AVAEVTLNGDIPFHRPR 105.24 0.00020817 37093000 10373 7646.5 6864.2 4418.9 10670 10404 10167 11863 6705 10911 TRUE FALSE FALSE 9645.906266 7040.563492 9522.20207 10287.42252 9331.669106 9120.46026 7623.109064 9162.053867 7286.194799 8178.814581 1.179377056 0.860829332 1.164252102 1.257813393 1.140956188 1.115132293 0.932055494 1.120217823 0.890861961 1 12.99767604 -6.7393793 23.91195747 0.995802003 1.117224264 0.257767697 0.110778512 231.8802611 251345.4222 0.043645993 0.033773418 1.82E-07 6.7393793 0.121422261 KSS(ph)TPEEVK ddPTM_HeLa_A485_30min_R1 8 KSSTPEEVK 9 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.01)S(0.671)T(0.319)PEEVK;KS(0.004)S(0.498)T(0.498)PEEVK;KS(0.104)S(0.576)T(0.32)PEEVK;KS(0.003)S(0.67)T(0.328)PEEVK;KS(0.105)S(0.447)T(0.447)PEEVK;KS(0.01)S(0.495)T(0.495)PEEVK;KS(0.079)S(0.591)T(0.329)PEEVK;KS(0.095)S(0.693)T(0.212)PEEVK ;;;;;;; 147.33 0.0001199 16399680000 13392232 8329772 3789982 22314220 7112903 10887141 15978420 18939570 8845449 26517490 TRUE FALSE FALSE 16371287.81 9303866.376 5192054.056 23533189.34 6404717.402 11457174.87 12564500.04 14294610.76 10620649.48 19907167.76 0.822381566 0.467362635 0.260813297 1.182146532 0.321729212 0.575530131 0.631154576 0.71806351 0.533508815 1 24.24678464 -13.7559806 0.49290643 10 0.605427937 0.17833363 0.248585696 3007.829482 18.98257727 29648.55241 0.117012925 1.75E-14 13.7559806 -9.394572063 KSS(ph)TPEEVK ddPTM_HeLa_A486_30min_R1 2 KSSTPEEVK 9 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.069)S(0.466)T(0.466)PEEVK;KS(0.061)S(0.47)T(0.47)PEEVK ; 93.011 0.0018041 790170000 2181360 1158060 799050 1451630 1022900 3507610 2743480 2055260 1806830 3911840 TRUE FALSE FALSE 2028457.929 1066291.108 1108463.559 3379468.001 894598.3438 3074876.741 2057032.286 1587322.164 1963447.479 2932289.802 0.691765844 0.363637696 0.378019785 1.152501366 0.305085242 1.048626483 0.701510569 0.541325132 0.669595303 1 21.48359626 KSS(ph)TPEEVKK ddPTM_HeLa_A485_30min_R1 1 KSSTPEEVKK 10 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.025)S(0.488)T(0.488)PEEVKK 128.21 4.23E-05 1101700000 4501200 1827500 803310 7381400 1409600 4423000 4502400 6414000 2352300 9074600 TRUE FALSE FALSE 5502476.411 2041210.228 1100487.798 7784627.191 1269255.275 4654581.441 3540425.459 4840956.443 2824385.033 6812469.226 0.807706608 0.299628543 0.161540223 1.142702731 0.186313542 0.683244399 0.519697828 0.710602321 0.414590502 1 22.69974638 -13.99999998 0.322162193 5.368215189 0.524934613 0.177619698 0.288304051 565.2909366 4.998153194 1685.033704 0.245354037 1.00E-14 13.99999998 -4.843280577 KSS(ph)TPEEVKK ddPTM_HeLa_A486_30min_R1 1 KSSTPEEVKK 10 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.038)S(0.481)T(0.481)PEEVKK 80.312 0.0033254 482000000 2090500 913330 687670 2101700 686350 4870700 2641100 2159500 1850400 4453100 TRUE FALSE FALSE 1943966.745 840954.4045 953954.2404 4892863.814 600261.583 4269802.556 1980268.845 1667828.992 2010794.162 3338014.775 0.582372121 0.251932499 0.285784907 1.465800526 0.179825922 1.279144295 0.593247478 0.499646977 0.602392229 1 21.67055891 KSS(ph)TPLSEAK ddPTM_HeLa_A486_30min_R1 1 KSSTPLSEAK 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KS(0.059)S(0.598)T(0.343)PLSEAK 124.86 6.87E-05 550030000 1034400 911940 411680 507370 923050 1125100 1454800 1306000 657340 1395700 TRUE FALSE FALSE 961893.9016 839674.5532 571093.5212 1181183.001 807272.4619 986296.6012 1090793.653 1008652.31 714318.7605 1046207.636 0.919410133 0.802588821 0.545870152 1.129013937 0.771617827 0.942735044 1.042616796 0.964103373 0.682769592 1 19.99673777 -5.264673825 24.99802959 0.929985106 0.760619623 0.232220704 0.147585906 435.2868641 3364205.05 0.040714061 0.063371767 5.44E-06 5.264673825 -0.169365483 KSS(ph)TSGSDFDTK ddPTM_HeLa_A485_30min_R1 2 KSSTSGSDFDTK 12 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 KS(0.071)S(0.691)T(0.146)S(0.031)GS(0.061)DFDTK;KS(0.031)S(0.749)T(0.212)S(0.009)GSDFDTK ; 132.4 1.40E-05 378740000 732680 573519 360123 1037090 741540 691509 1075060 1020340 509989 1457270 TRUE FALSE FALSE 895662.1383 640587.0581 493347.4837 1093743.601 667709.6739 727715.342 845364.6486 770100.0152 612339.1144 1093999.408 0.818704409 0.585546074 0.450957725 0.999766172 0.610338241 0.665188058 0.772728616 0.703930925 0.55972527 1 20.06118053 -11.10440934 2.509689239 1.57595233 0.68497389 0.296762934 0.14537432 26354650.25 9190250.715 86457733.19 0.035137388 7.86E-12 11.10440934 -0.89097844 KSS(ph)TSGSDFDTK ddPTM_HeLa_A486_30min_R1 1 KSSTSGSDFDTK 12 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 KS(0.012)S(0.914)T(0.054)S(0.007)GS(0.014)DFDTK 122.78 0.0001407 95048000 184280 163670 71451 79574 139350 186010 240970 211670 122500 250800 TRUE FALSE FALSE 171362.9236 150700.1931 99118.74072 185252.2934 121871.4236 163061.9774 180676.7573 163477.3617 133118.3986 187998.0476 0.911514379 0.801605097 0.52723282 0.985394773 0.648258986 0.867359951 0.961056562 0.869569465 0.708083942 1 17.52035815 -6.486670618 24.56725481 0.879579753 0.772593468 0.129093118 0.138468959 1039.223478 705115.0392 0.047781965 0.042123997 3.26E-07 6.486670618 -0.106986284 KSS(ph)VNGSSATSSG ddPTM_HeLa_A485_30min_R1 1 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 0 KS(0.187)S(0.806)VNGS(0.007)SATSSG 87.083 0.0049841 909260000 425300 490010 289320 470140 391120 431990 506790 595100 363860 531040 TRUE FALSE FALSE 519906.5177 547312.407 396351.5076 495822.5577 352178.7195 454608.3284 398510.1764 449150.7919 436883.3645 398661.5011 1.304130237 1.372874997 0.994205627 1.243718183 0.883402883 1.14033667 0.999620418 1.126647019 1.095875482 1 18.60480476 -4.756652851 24.99999815 1.065897994 1.338502716 0.574860092 0.095547231 76.21943587 398079.9334 0.022759151 0.056276585 1.75E-05 4.756652851 0.272604722 KSS(ph)VNGSSATSSG ddPTM_HeLa_A486_30min_R1 2 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 0 KS(0.049)S(0.793)VNGS(0.06)S(0.096)AT(0.001)SSG;KS(0.453)S(0.493)VNGS(0.052)S(0.002)ATSSG ; 117.67 0.00040843 1075350000 1455930 875930 792940 391560 945300 1322270 1235490 1039840 1082800 1498830 TRUE FALSE FALSE 1353876.825 806518.1167 1099987.604 911571.4683 826731.6594 1159141.771 926357.3343 803091.1315 1176657.976 1123513.212 1.205038633 0.7178537 0.979060675 0.811358032 0.735845071 1.03171174 0.824518416 0.71480346 1.047302304 1 20.09958566 -4.245000416 24.51710134 0.865145553 1.205038977 0.383867045 0.125557827 2479.104127 3697266.01 0.029349537 0.754322431 5.69E-05 4.245000416 0.339893424 KSSEAS(ph)PTAQR ddPTM_HeLa_A485_30min_R1 7 KSSEASPTAQR 11 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 KS(0.008)S(0.026)EAS(0.966)PT(0.001)AQR;KS(0.002)S(0.004)EAS(0.967)PT(0.027)AQR;KS(0.022)S(0.086)EAS(0.889)PT(0.002)AQR;KS(0.065)S(0.065)EAS(0.87)PTAQR;KS(0.004)S(0.016)EAS(0.609)PT(0.372)AQR;KSSEAS(0.997)PT(0.003)AQR;KS(0.002)S(0.002)EAS(0.996)PTAQR ;;;;;; 171.36 8.11E-08 972097000 933452 1199765 832472 929472 1216523 1238439 1604312 2029440 1031441 1331049 TRUE FALSE FALSE 1141095.177 1340067.08 1140438.035 980246.7018 1095401.699 1303281.751 1261537.635 1531716.658 1238441.748 999242.9804 1.141959663 1.341082306 1.141302023 0.98098933 1.096231567 1.304269108 1.262493367 1.532877076 1.239379983 1 19.93047601 -6.271620588 23.76209731 1.300776836 1.142670464 0.139333709 0.14739458 594.9551474 1388571.083 0.052282541 0.046674051 5.35E-07 6.271620588 -0.158106371 KSSEAS(ph)PTAQR ddPTM_HeLa_A486_30min_R1 4 KSSEASPTAQR 11 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 KSS(0.001)EAS(0.897)PT(0.102)AQR;KSSEAS(0.928)PT(0.072)AQR;KS(0.008)S(0.013)EAS(0.79)PT(0.19)AQR;KSS(0.001)EAS(0.979)PT(0.02)AQR ;;; 145.86 5.31E-07 986235000 1405944 981373 933274 552722 1239020 1398789 1500293 1373008 1068322 1568990 TRUE FALSE FALSE 1307394.586 903605.4294 1294662.687 1286764.749 1083610.558 1226220.635 1124903.823 1060404.051 1160925.011 1176104.692 1.111631129 0.768303567 1.100805648 1.094090312 0.921355527 1.042611805 0.956465722 0.901623859 0.987093257 1 20.16558506 -6.922821299 13.41631367 0.9524277 1.000028218 0.042006635 0.099601164 3.180474492 544.4302947 0.040991168 0.027635422 1.19E-07 6.922821299 0.047600517 KSSEGGVGVGPGGGDEPPT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KSSEGGVGVGPGGGDEPPTSPR 22 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 KSSEGGVGVGPGGGDEPPT(0.655)S(0.345)PR 131.81 1.37E-06 616880000 234400 280860 214080 237750 307940 282040 337100 378930 259020 327320 TRUE FALSE FALSE 286541.4713 313704.1338 293277.1006 250737.6805 277280.4124 296807.1783 265075.8311 285996.8234 311002.9381 245725.1479 1.166105601 1.276646434 1.193516834 1.02039894 1.128416911 1.207882794 1.0787493 1.163889109 1.265653682 1 17.90668599 -10.65110348 2.899728797 0.984068283 1.163919975 0.312281643 0.074150714 16088375.81 17817218.96 1937860.604 0.019656966 2.23E-11 10.65110348 0.179851691 KSSEGGVGVGPGGGDEPPTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KSSEGGVGVGPGGGDEPPTSPR 22 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 KSSEGGVGVGPGGGDEPPT(0.21)S(0.79)PR 145.59 1.09E-09 416270000 277480 259750 200320 78481 258850 234300 273720 264990 189880 280050 TRUE FALSE FALSE 258030.0849 239166.464 277889.2688 182707.7342 226382.6193 205394.4482 205232.3609 204657.5617 206338.9513 209923.6572 1.229161536 1.139302103 1.323763469 0.870353235 1.078404513 0.978424495 0.97765237 0.974914235 0.982923764 1 17.67950523 -5.259877716 24.99997276 0.98322556 1.221598345 0.768892729 0.062826326 63.33544759 1013900.385 0.016353979 0.026500243 5.50E-06 5.259877716 0.238372785 KSSGEIVYCGQVFEKS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 KSSGEIVYCGQVFEKSPLR 19 2 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 1 0 KSSGEIVYCGQVFEKS(1)PLR;KSSGEIVYCGQVFEKS(1)PLR ; 168.45 6.84E-13 1599980000 1352480 1122020 987630 1897980 1922610 1284670 2060570 1747300 1363050 2482850 TRUE FALSE FALSE 1653334.51 1253230.479 1352995.436 2001661.841 1731188.198 1351933.335 1620312.386 1318771.935 1636601.632 1863921.188 0.887019537 0.672362376 0.725886612 1.073898325 0.928788303 0.725316791 0.869303056 0.707525588 0.878042292 1 20.82990943 -11.75042568 1.374432894 2.863104769 0.826689867 0.158390972 0.117508675 675200.0977 25419.66608 3899398.007 0.034184027 1.78E-12 11.75042568 -2.036414902 KSSGEIVYCGQVFEKS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 KSSGEIVYCGQVFEKSPLR 19 2 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 1 0 KSSGEIVYCGQVFEKS(1)PLR 188.8 1.09E-18 844150000 1020600 835210 513620 435370 894240 1024400 1146000 1082900 702320 1201300 TRUE FALSE FALSE 949061.2104 769024.9178 712507.4192 1013563.362 782076.0807 898019.9433 859258.6788 836347.3095 763197.6631 900486.6608 1.053942553 0.854010338 0.791247056 1.125572878 0.868503793 0.997260684 0.954215888 0.928772569 0.84753911 1 19.78034538 -4.234215884 22.92154384 0.930216875 1.053943086 0.142120287 0.091580965 5908.998734 4974995.816 0.022326742 1.58731846 5.83E-05 4.234215884 0.123726211 KSSLDS(ph)NSSEMAIMMGADAK ddPTM_HeLa_A486_30min_R1 1 KSSLDSNSSEMAIMMGADAK 20 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 KS(0.114)S(0.114)LDS(0.258)NS(0.258)S(0.258)EMAIMMGADAK 149.18 9.10E-10 83152000 74905 87163 52686 55444 76554 134160 157640 188510 77200 146290 TRUE FALSE FALSE 69654.54631 80255.88644 73087.43018 129076.434 66951.88348 117608.7032 118196.8047 145590.3881 83891.75816 109658.0318 0.635197852 0.731874219 0.66650321 1.17708144 0.61055157 1.072504232 1.077867282 1.327676466 0.765030676 1 16.74265196 -5.175072657 0.640978842 1.063907497 0.568762342 0.328884075 0.19823804 1.526545523 0.983515102 0.110433319 0.479624823 6.68E-06 5.175072657 -0.495145155 KSSS(ph)KDS(ph)RPSQAAGDNQGDEAK ddPTM_HeLa_A486_30min_R1 1 KSSSKDSRPSQAAGDNQGDEAK 22 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 KS(0.306)S(0.332)S(0.361)KDS(0.562)RPS(0.439)QAAGDNQGDEAK 51.586 0.021165 35248000 10435 8073 2331.5 13769 6680.8 13725 23140 14959 6473.9 36194 TRUE FALSE FALSE 9703.560386 7433.266079 3234.31924 32054.92785 5842.831768 12031.74905 17350.12725 11553.16225 7035.062865 27130.78682 0.357658643 0.273979009 0.119212143 1.181496433 0.215357992 0.443472175 0.639499598 0.425832186 0.259301837 1 14.72764327 -10.76689018 2.433681734 1.150948437 0.442537628 0.26131513 0.284688582 20025208.78 13574780.16 18040813.96 0.074313917 1.71E-11 10.76689018 -0.708410809 KSSS(ph)KDSRPSQAAGDNQGDEAK ddPTM_HeLa_A485_30min_R1 1 KSSSKDSRPSQAAGDNQGDEAK 22 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.156)S(0.156)S(0.635)KDS(0.041)RPS(0.011)QAAGDNQGDEAK 122.79 4.26E-06 262470000 358070 161930 95679 686270 243190 300350 604710 441770 194140 896340 TRUE FALSE FALSE 437721.4362 180866.3049 131074.6436 723759.1924 218977.1497 316075.8616 475508.7685 333425.2148 233102.1172 672898.9339 0.65050101 0.268786731 0.194790981 1.0755838 0.325423535 0.469722637 0.706657039 0.495505637 0.346414752 1 19.36003031 -10.19688584 4.164009594 1.000218377 0.504018492 0.270392594 0.244570198 53186051.78 26048704.27 103685.3045 0.058430779 6.35E-11 10.19688584 -0.496199885 KSSS(ph)LESLQTAVAEVR ddPTM_HeLa_A485_30min_R1 1 KSSSLESLQTAVAEVR 16 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 KS(0.188)S(0.188)S(0.623)LESLQTAVAEVR 133.94 6.27E-06 108690000 76067 91831 76273 87053 107610 89302 117960 139380 88512 112930 TRUE FALSE FALSE 92987.84172 102569.8366 104489.5567 91808.48496 96895.97056 93977.71463 92756.88236 105196.8365 106275.5465 84778.62932 1.096831153 1.209854859 1.232498774 1.082920138 1.142929195 1.108507125 1.094106889 1.24084144 1.253565284 1 16.37141302 -11.36074275 2.193490447 1.51E-05 1.161700677 0.371352171 0.063402558 3058835.06 265274.2983 15292431.25 0.017078131 4.36E-12 11.36074275 1.161685581 KSSS(ph)LESLQTAVAEVR ddPTM_HeLa_A486_30min_R1 1 KSSSLESLQTAVAEVR 16 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 KS(0.169)S(0.169)S(0.661)LESLQTAVAEVR 103.4 0.00017225 0 48274 58421 66969 23204 80099 52156 60546 67484 46172 50897 TRUE FALSE FALSE 44890.24189 53791.50719 92901.19029 54020.08467 70052.23653 45721.523 45396.75041 52119.36637 50174.22614 38152.05992 1.176613844 1.409924059 2.435024229 1.415915282 1.836132484 1.198402474 1.189889891 1.366095736 1.315111851 1 15.21947333 -6.272136286 24.57400769 1.235280312 1.671205181 0.310451748 0.327252929 767.3413014 1762808.026 0.117109047 0.104365519 5.34E-07 6.272136286 0.435924869 KSSSDPGIPGGPQAIPAT(ph)NSPDHSDHTLSVSSDSGHSTASAR ddPTM_HeLa_A485_30min_R1 1 KSSSDPGIPGGPQAIPATNSPDHSDHTLSVSSDSGHSTASAR 42 1 Q68CZ2;E9PCX8;C9JHU5 Q68CZ2 TNS3 Tensin-3 1 0 KSSSDPGIPGGPQAIPAT(0.437)NS(0.437)PDHS(0.022)DHT(0.022)LS(0.024)VS(0.018)S(0.02)DS(0.004)GHS(0.006)T(0.006)AS(0.006)AR 52.88 0.0088666 116700000 17148 34207 43275 7713.8 56640 21857 24785 36459 34876 11271 TRUE FALSE FALSE 20962.51344 38207.21109 59284.22332 8135.185362 51000.72272 23001.39872 19489.48228 27517.37308 41875.2933 8461.347127 2.477443973 4.51549978 7.006475734 0.961452738 6.027494435 2.718408591 2.303354535 3.252126721 4.949010207 1 13.04667166 KSSSISEEKGDS(ph)DDEKPR ddPTM_HeLa_A485_30min_R1 2 KSSSISEEKGDSDDEKPR 18 3 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR ; 170.65 1.49E-11 1592840000 678630 455100 230510 1668700 705800 707220 1644490 1329040 439310 2558700 TRUE FALSE FALSE 829588.9023 508319.9862 315785.2413 1759856.856 635528.0738 744248.9456 1293131.277 1003090.856 527475.4874 1920863.179 0.43188339 0.264631022 0.164397571 0.916180223 0.330855462 0.38745547 0.67320322 0.522208384 0.274603362 1 20.87332333 -14 0.262364338 4.566847569 0.403831008 0.381244586 0.210824145 217.9775396 2.139662038 420.3093421 0.280611696 1.00E-14 14 -4.163016562 KSSSISEEKGDS(ph)DDEKPR ddPTM_HeLa_A486_30min_R1 6 KSSSISEEKGDSDDEKPR 18 3 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR;KSSSISEEKGDS(1)DDEKPR ;;;;; 185.45 7.07E-18 5561690000 4539460 3328350 983165 5300500 2560830 5507020 8634810 7137270 2606560 13552960 TRUE FALSE FALSE 4221267.296 3064599.424 1363872.818 12339831.87 2239626.823 4827619.864 6474289.208 5512269.427 2832498.72 10159210.6 0.415511348 0.301657239 0.134249881 1.214644755 0.220452839 0.475196357 0.637282705 0.542588361 0.278810907 1 23.27628497 -11.0438707 2.667867365 1.685957495 0.476095744 0.233635115 0.288286388 39512418.22 12642316.86 165676376 0.07206293 9.04E-12 11.0438707 -1.209861751 KSST(ph)PEEVK ddPTM_HeLa_A485_30min_R1 1 KSSTPEEVK 9 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.073)S(0.227)T(0.7)PEEVK 77.185 0.008739 187700000 525830 331410 152870 878540 294930 466880 626970 745230 369560 1148000 TRUE FALSE FALSE 642799.0694 370165.5166 209422.9745 926532.4156 265565.7336 491325.1149 493012.7376 562461.174 443727.3022 861824.7274 0.745858234 0.429513687 0.242999496 1.07508219 0.308143553 0.570098651 0.572056849 0.652639865 0.514869541 1 19.71703497 -14 0.405399547 8.291286091 0.556291065 0.253061362 0.221884689 1105.024125 7.611258389 7142.238379 0.132696928 1.00E-14 14 -7.734995026 KSST(ph)PEEVK ddPTM_HeLa_A486_30min_R1 3 KSSTPEEVK 9 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.079)S(0.417)T(0.504)PEEVK;KS(0.034)S(0.165)T(0.801)PEEVK;KS(0.023)S(0.245)T(0.731)PEEVK ;; 105.03 0.0010201 6208710000 4775560 2485030 1759180 3156380 2047460 7038640 5609340 4144560 3562370 7760500 TRUE FALSE FALSE 4440817.905 2288107.172 2440381.608 7348212.155 1790648.475 6170284.16 4205823.802 3200934.163 3871159.1 5817220.288 0.763391738 0.393333424 0.419509918 1.263182722 0.307818578 1.060692883 0.72299545 0.550251496 0.665465447 1 22.47189851 KSST(ph)PEEVKK ddPTM_HeLa_A485_30min_R1 1 KSSTPEEVKK 10 2 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 KS(0.01)S(0.037)T(0.954)PEEVKK 65.295 0.019338 278140000 555200 233110 106020 981700 188630 578590 544640 827490 317060 1201800 TRUE FALSE FALSE 678702.3246 260370.1867 145241.2099 1035327.785 169849.3349 608884.0777 428273.2147 624546.78 380691.0338 902213.3775 0.752263646 0.288590475 0.160983215 1.147542046 0.188258498 0.674878131 0.474691714 0.692238439 0.421952327 1 19.78310915 -14 0.312193024 5.213016142 0.509053444 0.191702496 0.284277694 493.3825306 4.461971001 1368.178286 0.256093295 1.00E-14 14 -4.703962698 KSST(ph)PLSEAK ddPTM_HeLa_A485_30min_R1 2 KSSTPLSEAK 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KS(0.189)S(0.189)T(0.621)PLS(0.001)EAK;KS(0.035)S(0.167)T(0.798)PLSEAK ; 107.17 0.0007653 1196460000 1385400 929760 660230 1837330 1582480 1241060 1706520 1540480 1025530 2489150 TRUE FALSE FALSE 1693577.45 1038487.344 904476.5515 1937698.686 1424922.735 1306039.983 1341908.061 1162674.865 1231344.464 1868650.714 0.906310333 0.555741817 0.484026546 1.03695071 0.762540973 0.698921405 0.718116045 0.622200209 0.658948435 1 20.8335655 -11.32743996 2.12094497 2.425072758 0.71205197 0.236939243 0.152766367 11358166.82 1423217.504 77525271.58 0.03967218 4.71E-12 11.32743996 -1.713020788 KSST(ph)PLSEAK ddPTM_HeLa_A486_30min_R1 1 KSSTPLSEAK 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KS(0.01)S(0.175)T(0.814)PLSEAK 107.99 0.00073096 554770000 1262600 1153300 518450 602790 1102500 1423100 1652800 1593900 833380 1738100 TRUE FALSE FALSE 1174098.26 1061908.308 719207.7246 1403325.583 964214.1696 1247532.391 1239251.958 1231003.765 905618.0494 1302868.447 0.901164091 0.815054129 0.552018683 1.077104589 0.740070244 0.957527519 0.951171979 0.944841183 0.695095542 1 20.31325999 -5.270625806 24.99922478 0.903793493 0.761976477 0.211584318 0.135182204 1063.611958 2894429.675 0.037018354 0.055777618 5.36E-06 5.270625806 -0.141817016 KSSTGS(ph)PTSPLNAEK ddPTM_HeLa_A485_30min_R1 1 KSSTGSPTSPLNAEK 15 1 Q15746-4;Q15746-5;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-10;Q15746-8;Q15746-9;Q15746-11;Q15746-7 Q15746-4 MYLK "Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form" 1 0 KS(0.149)S(0.149)T(0.099)GS(0.507)PT(0.094)S(0.001)PLNAEK 116.98 7.43E-05 251960000 336820 304240 175020 362640 313890 334040 445740 480520 280490 464180 TRUE FALSE FALSE 411744.447 339818.2215 239767.1812 382450.1049 282638.0095 351529.8179 350504.0076 362671.7166 336781.7702 348468.4686 1.181583082 0.975176385 0.688059904 1.097517105 0.811086325 1.008785154 1.005841387 1.040759062 0.96646268 1 18.41066859 KSSTGS(ph)PTSPLNAEK ddPTM_HeLa_A486_30min_R1 1 KSSTGSPTSPLNAEK 15 1 Q15746-4;Q15746-5;Q15746-2;Q15746-3;Q15746-6;Q15746;Q15746-10;Q15746-8;Q15746-9;Q15746-11;Q15746-7 Q15746-4 MYLK "Myosin light chain kinase, smooth muscle;Myosin light chain kinase, smooth muscle, deglutamylated form" 1 0 KS(0.031)S(0.031)T(0.187)GS(0.731)PT(0.02)S(0.001)PLNAEK 135.04 6.34E-06 229700000 540810 506930 229370 214330 371250 550760 618740 569880 371400 743920 TRUE FALSE FALSE 502902.0117 466759.0206 318188.2067 498971.0716 324684.3632 482812.8309 463924.7076 440130.7644 403593.251 557637.5899 0.901843816 0.837029334 0.570600355 0.894794542 0.582249779 0.865818301 0.831946619 0.789277431 0.723755461 1 19.08896829 KSSTPEEVK ddPTM_HeLa_A485_30min_R1 1 KSSTPEEVK 9 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 84.479 0.0018615 0 190310 183310 108380 247180 140840 187130 274680 339050 176910 321540 FALSE FALSE TRUE 232643.8029 204746.5099 148474.2721 260682.8175 126817.4751 196927.8374 215992.3741 255897.4559 212414.2143 241385.9955 0.963783348 0.848212049 0.615090663 1.079941763 0.525372132 0.815821303 0.894800768 1.060117242 0.879977373 1 17.88098245 -6.937614111 3.635623291 0.978314077 0.801163691 0.201603334 0.153145679 0.362967725 9.719796713 0.068575726 0.043184248 1.15E-07 6.937614111 -0.177150386 KST(ph)AALEEDAQILK ddPTM_HeLa_A486_30min_R1 2 KSTAALEEDAQILK 14 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 KS(0.392)T(0.608)AALEEDAQILK;KS(0.398)T(0.602)AALEEDAQILK ; 141.86 9.24E-08 140772000 174415 174299 81955 98296 171658 185306 258170 238880 130743 219320 TRUE FALSE FALSE 162189.4092 160486.9125 113690.1708 228838.0556 150127.053 162444.8298 193573.1354 184492.2387 142075.9085 164400.8445 0.986548516 0.97619275 0.691542499 1.391951826 0.913176897 0.988102162 1.177446113 1.1222098 0.86420425 1 17.32685818 -5.229682948 24.99834356 1.065508855 0.893904504 0.212565376 0.15894229 1104.807184 869692.0575 0.042067861 0.072855767 5.89E-06 5.229682948 -0.171604351 KSTGGK(ac)APR ddPTM_HeLa_A485_30min_R1 2 KSTGGKAPR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; KSTGGK(1)APR;KSTGGK(1)APR 132.32 0.003789 1493490000 870480 700010 378590 898730 329530 1231940 598250 3881700 1140100 4192300 FALSE TRUE FALSE 1064115.273 781870.0802 518646.1954 947825.3442 296720.8361 1296442.473 470429.0002 2929706.989 1368907.612 3147236.764 0.338110969 0.248430652 0.164794146 0.301161119 0.094279795 0.411930392 0.149473661 0.930882297 0.434955396 1 21.58565428 -7.562264352 0.870344612 0.940659458 0.222532517 0.61411369 0.185401702 0.341195091 0.509095371 0.160012408 0.06197787 2.74E-08 7.562264352 -0.718126941 KSTGGK(ac)APR ddPTM_HeLa_A486_30min_R1 2 KSTGGKAPR 9 2 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; KSTGGK(1)APR;KSTGGK(1)APR 134.57 0.0028856 252820000 351360 150557 575210 213300 145018 956370 240540 270450 518300 383060 FALSE TRUE FALSE 326731.4784 138626.315 797946.7167 496573.1796 126828.4902 838382.7931 180354.3478 208874.4389 563226.6613 287139.2827 1.137884985 0.482784221 2.778953507 1.72938086 0.441696758 2.919777417 0.628107538 0.727432474 1.961510303 1 18.13139119 KSTLT(ph)PTQR ddPTM_HeLa_A486_30min_R1 2 KSTLTPTQR 9 1 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 KSTLT(0.998)PT(0.002)QR;KST(0.001)LT(0.998)PTQR ; 111.79 0.00073999 560090000 758900 706660 428050 284060 726790 668970 743920 755600 535910 868550 TRUE FALSE FALSE 705705.029 650661.688 593802.4236 661306.0356 635629.2212 586439.283 557783.3476 583566.3746 582363.1103 651059.4267 1.083933355 0.99938909 0.912055642 1.015738362 0.976299851 0.900746167 0.856731851 0.8963335 0.894485336 1 19.31242971 -6.198344329 3.904661605 0.899454733 0.995843599 0.412012392 0.05217067 0.22849979 6.992964343 0.018069693 0.017720694 6.33E-07 6.198344329 0.096388866 KSTQPDVCAS(ph)PQEKPLR ddPTM_HeLa_A485_30min_R1 2 KSTQPDVCASPQEKPLR 17 2 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 0 KS(0.006)T(0.006)QPDVCAS(0.988)PQEKPLR;KSTQPDVCAS(1)PQEKPLR ; 83.064 0.0010406 479760000 486880 413990 358130 672670 627690 484680 743810 704830 454270 884760 TRUE FALSE FALSE 595184.7763 462402.5293 490617.19 709416.2588 565194.9796 510057.0953 584888.9171 531969.3374 545437.8222 664205.6148 0.896085132 0.696173774 0.738652579 1.068067242 0.850933758 0.767920481 0.88058412 0.80091063 0.821188213 1 19.34127039 -11.62343325 1.915311209 3.591381173 0.834258523 0.204050819 0.097367719 3882247.761 172705.2369 43746186.85 0.025261226 2.38E-12 11.62343325 -2.757122651 KSTYFS(ph)DEEELS(ph)D ddPTM_HeLa_A485_30min_R1 1 KSTYFSDEEELSD 13 1 G3V1V1;Q8TBF4 G3V1V1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 2 0 KS(0.148)T(0.133)Y(0.001)FS(0.718)DEEELS(1)D 61.097 0.013024 76926000 192210 201690 158490 263960 270150 212850 324370 326230 196750 339810 TRUE FALSE FALSE 234966.4514 225275.891 217122.0463 278379.4664 243252.9174 223994.4969 255065.6996 246221.581 236235.9203 255101.6207 0.921070006 0.883082947 0.851119823 1.091249305 0.953553007 0.878059874 0.999859189 0.965190187 0.926046333 1 17.96071254 KSTYFS(ph)DEEELS(ph)D ddPTM_HeLa_A486_30min_R1 2 KSTYFSDEEELSD 13 1 G3V1V1;Q8TBF4 G3V1V1 ZCRB1 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 2 0 KST(0.001)YFS(0.998)DEEELS(1)D;KS(0.003)T(0.002)YFS(0.995)DEEELS(1)D ; 120.29 4.41E-05 227960000 898820 837270 483770 476070 817800 927790 1147840 1085080 692530 1198250 TRUE FALSE FALSE 835817.3595 770921.6759 671098.6998 1108315.019 715223.8983 813328.7029 860638.2914 838030.9711 752559.058 898200.4007 0.930546634 0.858295849 0.747159208 1.23392844 0.796285437 0.905509174 0.958180703 0.93301113 0.837852062 1 19.77667784 KSVAEGLSGS(ph)LVQEPFQLATEKR ddPTM_HeLa_A485_30min_R1 1 KSVAEGLSGSLVQEPFQLATEKR 23 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KSVAEGLS(0.001)GS(0.999)LVQEPFQLATEKR 196.15 2.23E-22 135630000 119860 125780 74291 85554 166840 170800 217060 266360 90762 148180 TRUE FALSE FALSE 146522.4435 140488.8769 101774.3324 90227.59839 150228.8238 179742.8239 170683.3578 201034.7924 108977.1009 111241.4531 1.317156864 1.262918391 0.914895748 0.811096906 1.350475202 1.615789968 1.534350308 1.807193154 0.979644709 1 16.76333497 -5.973634257 16.37969373 1.451041445 1.078583734 0.207977646 0.278535298 6.494009111 4032.280648 0.08617262 0.097662994 1.06E-06 5.973634257 -0.372457711 KSVAEGLSGS(ph)LVQEPFQLATEKR ddPTM_HeLa_A486_30min_R1 1 KSVAEGLSGSLVQEPFQLATEKR 23 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KSVAEGLS(0.003)GS(0.997)LVQEPFQLATEKR 173.96 3.88E-15 169920000 106450 79708 41035 40399 109250 85695 100310 116140 62483 130740 TRUE FALSE FALSE 98988.40471 73391.64779 56924.85096 94050.91365 95546.84628 75122.82218 75211.37703 89697.45732 67899.07675 98001.85303 1.010066664 0.748880205 0.580854843 0.959685054 0.974949384 0.766544916 0.76744852 0.915262871 0.692834622 1 16.58052141 -10.21569678 4.814516093 1.000029736 0.822447266 0.138854894 0.13139074 4.23E-05 6.89E-06 0.128343637 0.031122695 6.09E-11 10.21569678 -0.177582471 KSVS(ph)PKLS(ph)PVIS(ph)PR ddPTM_HeLa_A485_30min_R1 2 KSVSPKLSPVISPR 14 2 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 3 0 KS(0.133)VS(0.912)PKLS(0.955)PVIS(1)PR;KS(0.37)VS(0.648)PKLS(0.983)PVIS(1)PR ; 95.206 0.0010734 1303030000 770750 656390 435150 1520630 930420 808460 1520400 1469900 608350 1861190 TRUE FALSE FALSE 942200.6784 733149.1007 596130.0931 1603698.166 837784.1179 850789.7155 1195554.119 1109404.72 730440.2649 1397229.586 0.674334904 0.524716273 0.426651496 1.147769975 0.599603763 0.608911896 0.855660467 0.79400317 0.522777554 1 20.41413767 -14 0.131152562 1.941739709 0.572317399 0.174749413 0.198418623 268.9729743 2.215102321 68.06965707 1.502191588 1.00E-14 14 -1.369422309 KSVS(ph)PKLS(ph)PVIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KSVSPKLSPVISPR 14 2 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 3 0 KS(0.162)VS(0.838)PKLS(1)PVIS(1)PR 99.923 0.00070219 952080000 1355600 1046700 548670 753400 1046400 1213500 1601900 1362700 726090 1996000 TRUE FALSE FALSE 1260579.44 963755.68 761129.7179 1753953.275 915150.7547 1063790.708 1201087.677 1052442.958 789028.0658 1496188.608 0.842527094 0.644140501 0.508712413 1.172280864 0.611654674 0.711000406 0.802764886 0.703415968 0.527358691 1 20.51286062 KSWSTATS(ph)PLGGERPFR ddPTM_HeLa_A485_30min_R1 2 KSWSTATSPLGGERPFR 17 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 KSWS(0.001)T(0.001)AT(0.035)S(0.963)PLGGERPFR;KSWST(0.001)AT(0.077)S(0.922)PLGGERPFR ; 179.17 1.15E-17 2229820000 680930 966360 766850 567450 1028030 1002940 1213940 1443310 748040 821140 TRUE FALSE FALSE 832400.5293 1079367.396 1050539.726 598448.3566 925675.7236 1055452.388 954571.802 1089335.959 898164.7666 616444.91 1.35032428 1.75095516 1.704190771 0.970805902 1.501635764 1.712160114 1.548511127 1.767126213 1.457007353 1 19.23361245 -8.032149207 22.79497248 0.99999999 1.541547511 0.333924918 0.226771372 1636.343787 1160228.001 0.225902499 0.058327774 9.29E-09 8.032149207 0.541547522 KSWSTATS(ph)PLGGERPFR ddPTM_HeLa_A486_30min_R1 2 KSWSTATSPLGGERPFR 17 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 KSWST(0.001)AT(0.204)S(0.795)PLGGERPFR;KSWS(0.013)T(0.013)AT(0.459)S(0.516)PLGGERPFR ; 177.32 2.39E-13 1654060000 2568460 2290240 1930280 851040 2967960 2226650 2755890 2806860 1950520 2790130 TRUE FALSE FALSE 2388424.218 2108753.041 2677736.111 1981264.129 2595690.782 1951948.562 2066337.173 2167799.251 2119592.644 2091463.287 1.141987159 1.008266822 1.280317052 0.94731002 1.241088379 0.933293247 0.987986347 1.036498831 1.013449606 1 20.99608124 -6.281272112 24.9973265 0.996135582 1.116266803 0.3180311 0.094511546 1054.228186 1328752.393 0.031057067 0.02742486 5.23E-07 6.281272112 0.120131221 KSY(ph)LERS(ph)VK ddPTM_HeLa_A486_30min_R1 2 KSYLERSVK 9 2 O60925 O60925 PFDN1 Prefoldin subunit 1 2 0 KS(0.351)Y(0.679)LERS(0.97)VK;KS(0.314)Y(0.695)LERS(0.99)VK ; 68.069 0.015617 1360440000 1645290 1587880 638010 882510 1231690 1947700 2369200 2074510 1288820 2816400 TRUE FALSE FALSE 1529963.667 1462050.606 885064.5585 2054527.88 1077199.955 1707412.577 1776401.101 1602189.359 1400535.955 2111155.108 0.724704528 0.692535854 0.41923237 0.973177135 0.510241976 0.808757523 0.841435617 0.758915985 0.663397943 1 21.00960115 -13.99999997 0.141931614 1.996524649 0.610908039 0.264047019 0.148928955 184.7886968 1.595518019 52.06577706 0.853873125 1.00E-14 13.99999997 -1.38561661 KSYESSEDCSEAAGS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR ;;; 253.86 7.20E-58 5876700000 2237270 2366720 2278480 2440100 3368670 2575690 3207680 3640610 2479640 3233270 TRUE FALSE FALSE 2734942.993 2643487.316 3121384.567 2573396.484 3033273.387 2710549.146 2522332.964 2747744.689 2977281.003 2427275.293 1.126754349 1.08907602 1.28596232 1.060199678 1.249661872 1.11670446 1.039162295 1.132028451 1.226593873 1 21.21090631 -6.497817951 24.61741696 1.10580349 1.161828355 0.11161184 0.084195568 1564.061123 1536392.339 0.028949709 0.025417076 3.18E-07 6.497817951 0.056024864 KSYESSEDCSEAAGS(ph)PAR ddPTM_HeLa_A486_30min_R1 3 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR ;; 278.43 1.58E-69 4344500000 2898890 3264150 2285080 1216960 3700700 2964400 3505900 3763400 2448100 3313200 TRUE FALSE FALSE 2695692.781 3005486.866 3169924.173 2833144.382 3236523.698 2598682.468 2628686.738 2906555.974 2660303.279 2483553.155 1.085417792 1.210156046 1.27636655 1.140762531 1.303182778 1.046356694 1.058437881 1.170321629 1.071168247 1 21.24397419 -6.281982515 24.92038777 1.079225798 1.204163464 0.473350629 0.070233085 757.3560071 918727.4966 0.024326063 0.02147485 5.22E-07 6.281982515 0.124937667 KSYESSEDCSEAAGS(ph)PARK ddPTM_HeLa_A486_30min_R1 1 KSYESSEDCSEAAGSPARK 19 2 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KSYESSEDCSEAAGS(1)PARK 92.336 0.00023749 416610000 104060 114650 64837 41710 103450 100690 130490 130260 85125 131660 TRUE FALSE FALSE 96765.93137 105564.7165 89943.6228 97102.98791 90474.33637 88267.89154 97840.02182 100602.6416 92503.70354 98691.47904 0.980489221 1.069643676 0.911361585 0.983904475 0.916739087 0.894382093 0.991372536 1.019365021 0.937301826 1 16.59063791 -10.28244189 19.39343872 1 0.967660207 0.035726614 0.051106319 0 0 0.051160761 0.012408307 5.22E-11 10.28244189 -0.032339793 KT(ph)ASFGNILDVPEIVISGNGQPR ddPTM_HeLa_A485_30min_R1 1 KTASFGNILDVPEIVISGNGQPR 23 1 O43318-3;O43318 O43318-3 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 KT(0.5)AS(0.5)FGNILDVPEIVISGNGQPR 128.06 2.67E-06 86223000 84252 101430 81564 93511 113020 103960 142480 144170 87402 126500 TRUE FALSE FALSE 102993.5667 113291.3562 111737.9178 98619.26915 101767.332 109403.1848 112037.984 108812.0815 104942.7797 94965.87806 1.084532348 1.19296908 1.176611221 1.038470566 1.071619976 1.152026255 1.179770949 1.145801878 1.105057752 1 16.53512162 -8.13088104 4.602836712 1.000006734 1.131052507 0.395144225 0.048181172 1.102038692 37.38677188 0.050065964 0.013077698 7.40E-09 8.13088104 0.131045772 KT(ph)ASFGNILDVPEIVISGNGQPR ddPTM_HeLa_A486_30min_R1 2 KTASFGNILDVPEIVISGNGQPR 23 1 O43318-3;O43318 O43318-3 MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 KT(0.597)AS(0.403)FGNILDVPEIVISGNGQPR;KT(0.584)AS(0.416)FGNILDVPEIVISGNGQPR ; 143.92 1.90E-09 155306000 239984 250406 169780 91004 270926 257638 288023 286559 209450 308663 TRUE FALSE FALSE 223162.3609 230562.9166 235523.3629 211861.9111 236943.9348 225853.243 215956.599 221315.7712 227605.2946 231371.7757 0.964518512 0.996504072 1.01794336 0.915677422 1.024083141 0.976148635 0.933374861 0.956537462 0.983721087 1 17.81985336 KT(ph)ETQEKNPLPSK ddPTM_HeLa_A486_30min_R1 1 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 KT(0.517)ET(0.483)QEKNPLPSK 73.464 0.0088602 201200000 276090 261270 110050 153610 188200 458840 533430 530170 241260 556540 TRUE FALSE FALSE 256737.5167 240566.0137 152664.3072 357611.843 164594.2011 402232.9859 399960.172 409461.8645 262172.6111 417178.7615 0.61541368 0.576649714 0.365944581 0.857214882 0.394541181 0.96417417 0.958726112 0.981502182 0.628441894 1 18.67030619 -6.274154709 24.75869899 0.908672604 0.568283403 0.538105567 0.159580679 537.8469465 1047267.454 0.05397017 0.047911316 5.32E-07 6.274154709 -0.340389201 KT(ph)GLY(ph)EYK ddPTM_HeLa_A486_30min_R1 1 KTGLYEYK 8 1 I3L2M9;I3L3H0;Q9UKL6 I3L2M9 PCTP Phosphatidylcholine transfer protein 2 0 KT(1)GLY(1)EY(0.001)K 51.727 0.0073576 0 92219 131300 98522 51725 138150 145510 142630 149280 108780 132330 TRUE FALSE FALSE 85754.92432 120895.3098 136672.3569 120418.414 120821.9388 127558.4556 106942.4654 115292.2028 118209.138 99193.70668 0.864519809 1.21878004 1.377832944 1.213972318 1.218040366 1.28595311 1.078117443 1.162293523 1.191699977 1 16.59796097 -6.776440931 24.99551515 1.121552202 1.207541897 0.08949339 0.132789865 670.827269 1117718.777 0.056537218 0.038289986 1.67E-07 6.776440931 0.085989695 KT(ph)GSPEIK ddPTM_HeLa_A486_30min_R1 1 KTGSPEIK 8 1 E9PKA2;Q9BZ95-3;Q9BZ95-4;Q9BZ95-2;Q9BZ95-5;Q9BZ95 E9PKA2 WHSC1L1 Histone-lysine N-methyltransferase NSD3 1 0 KT(0.793)GS(0.207)PEIK 78.096 0.0091895 484410000 1262600 880720 491020 631950 840880 1432500 1556200 1184200 959670 1905100 TRUE FALSE FALSE 1174098.26 810928.5397 681156.094 1471211.537 735408.9895 1255772.715 1166822.3 914583.5109 1042854.968 1428050.56 0.822168551 0.567857023 0.476983178 1.030223704 0.514974056 0.879361523 0.817073522 0.640441968 0.730264738 1 20.44561563 -14 0.204574713 2.295256104 0.674434382 0.206250094 0.164946102 229.3142281 2.277706857 121.8981282 0.369057638 1.00E-14 14 -1.620821722 KT(ph)GSYGALAEITASK ddPTM_HeLa_A486_30min_R1 1 KTGSYGALAEITASK 15 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KT(0.5)GS(0.5)YGALAEITASK 165.1 4.79E-12 371750000 318200 301120 143190 136840 299760 328080 412670 409450 229330 397820 TRUE FALSE FALSE 295895.8232 277258.1545 198637.0028 318570.4355 262161.3056 287604.8253 309415.6012 316227.1732 249208.509 298203.2826 0.992262126 0.929762248 0.66611273 1.06829956 0.879136217 0.964458951 1.037599581 1.060441624 0.835700086 1 18.18593661 KT(ph)GTTVPESIHSFIGDGLVKPEALNKK ddPTM_HeLa_A486_30min_R1 1 KTGTTVPESIHSFIGDGLVKPEALNKK 27 3 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 KT(0.333)GT(0.333)T(0.333)VPESIHSFIGDGLVKPEALNKK 138.55 6.37E-07 273540000 285830 213170 110340 29601 190040 244340 354670 301360 192980 233680 TRUE FALSE FALSE 265794.793 196277.6328 153066.603 68912.62395 166203.4111 214195.8151 265927.8147 232746.9066 209707.6618 175165.007 1.51739664 1.120529929 0.873842359 0.393415472 0.94883912 1.22282309 1.518156047 1.328729468 1.197200659 1 17.41835507 -6.313279547 4.673736349 1.296027594 0.941108363 0.188252257 0.286069491 0.335130394 16.10066384 0.110724365 0.098763813 4.86E-07 6.313279547 -0.354919231 KT(ph)KT(ph)LLK ddPTM_HeLa_A485_30min_R1 1 KTKTLLK 7 2 O00570;P41225 O00570 SOX1;SOX3 Transcription factor SOX-1;Transcription factor SOX-3 2 0 KT(1)KT(1)LLK 61.398 0.036205 1218000000 830750 585160 544040 1297100 974360 819760 1422800 1053700 844050 1776800 TRUE FALSE FALSE 1015547.471 653589.3718 745303.0354 1367957.289 877349.2972 862681.366 1118807.157 795278.4229 1013443.093 1333876.46 0.761350472 0.489992433 0.558749673 1.025550214 0.657744044 0.646747575 0.838763702 0.596215952 0.75977283 1 20.34719362 -14 0.229104528 2.586215744 0.667070662 0.277497688 0.144951379 223.3604639 2.236426948 164.3666712 0.260618246 1.00E-14 14 -1.919145082 KT(ph)KT(ph)LLK ddPTM_HeLa_A486_30min_R1 1 KTKTLLK 7 2 O00570;P41225 O00570 SOX1;SOX3 Transcription factor SOX-1;Transcription factor SOX-3 2 0 KT(1)KT(1)LLK 65.347 0.028457 977670000 1169800 1172200 598050 630390 1270500 1353000 1832800 1811200 869130 1750100 TRUE FALSE FALSE 1087803.061 1079310.603 829630.9763 1467579.778 1111142.043 1186080.616 1374214.055 1398829.298 944466.8882 1311863.569 0.829204413 0.82273083 0.632406445 1.118698478 0.846995122 0.904118877 1.047528178 1.066291748 0.71994292 1 20.32318626 -5.256609134 24.99949965 0.957319162 0.767575599 0.358692334 0.120140633 464.9414211 2406350.305 0.032306697 0.053728035 5.54E-06 5.256609134 -0.189743563 KT(ph)LDELSQGTTTVK ddPTM_HeLa_A485_30min_R1 1 KTLDELSQGTTTVK 14 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 KT(1)LDELSQGTTTVK 74.364 0.0069853 83370000 70290 75773 57323 136190 85180 72153 107150 96310 49170 114540 TRUE FALSE FALSE 85925.768 84633.99321 78529.16311 143629.7148 76699.18011 75930.81951 84256.52716 72689.82149 59037.96799 85987.28595 0.999284569 0.984261711 0.913264819 1.670359906 0.8919828 0.883047054 0.979871922 0.845355458 0.686589504 1 16.39183574 -5.951728157 24.99990181 0.876931471 1.135086294 0.270344426 0.209742671 166.1249169 86034.96886 0.066532641 0.075440928 1.12E-06 5.951728157 0.258154823 KT(ph)LNT(ph)ESNCEYK ddPTM_HeLa_A485_30min_R1 1 KTLNTESNCEYK 12 1 Q9Y473 Q9Y473 ZNF175 Zinc finger protein 175 2 0 KT(0.667)LNT(0.667)ES(0.667)NCEYK 52.928 0.016245 105870000 5693.9 28992 64415 2896.7 26016 17667 18208 12638 26156 8820.5 TRUE FALSE FALSE 6960.488411 32382.3622 88244.78903 3054.939386 23425.75569 18592.0168 14317.71205 9538.510684 31405.26928 6621.711679 1.051161505 4.890331046 13.32658281 0.461351918 3.537719071 2.807735779 2.162237311 1.440490185 4.742772081 1 12.69298848 KT(ph)PAQPQR ddPTM_HeLa_A485_30min_R1 4 KTPAQPQR 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KT(1)PAQPQR;KT(1)PAQPQR;KT(1)PAQPQR;KT(1)PAQPQR ;;; 104.82 0.0012641 429023000 222241 143320 100979 334982 177506 177750 218889 214742 153600 446541 TRUE FALSE FALSE 271677.7437 160080.0273 138335.3342 353281.2184 159832.8794 187056.7151 172121.577 162076.1878 184426.1111 335226.5467 0.810430279 0.477527895 0.41266223 1.053858121 0.476790639 0.558000901 0.513448528 0.483482557 0.550153659 1 18.35477688 -10.67060667 4.300232168 1.015799796 0.587789273 0.30415713 0.184566292 0.028027787 0.002146898 0.179155202 0.042876028 2.13E-11 10.67060667 -0.428010522 KT(ph)PAQPQR ddPTM_HeLa_A486_30min_R1 4 KTPAQPQR 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KT(1)PAQPQR;KT(1)PAQPQR;KT(1)PAQPQR;KT(1)PAQPQR ;;; 115.57 0.00084341 530273000 224090 167717 126732 97416 163107 320331 264981 198888 225705 284168 TRUE FALSE FALSE 208382.4482 154426.4941 175806.0244 226789.3711 142648.5991 280811.8181 198679.9511 153605.5441 245269.2911 213010.4832 0.978273206 0.724971334 0.825339776 1.064686431 0.669678774 1.318300461 0.932723818 0.721117298 1.151442349 1 17.70056491 -5.23119972 23.42105241 0.967319492 0.831072333 0.09730395 0.187349399 783.3100458 606681.5538 0.04946444 0.085653308 5.87E-06 5.23119972 -0.136247159 KT(ph)PAQPQRR ddPTM_HeLa_A486_30min_R1 2 KTPAQPQRR 9 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KT(1)PAQPQRR;KT(1)PAQPQRR ; 95.401 0.0026274 87637000 60480 37509 55278 35373 38276 98680 67031 61082 73438 85599 TRUE FALSE FALSE 56240.66432 34536.65023 76683.122 82350.13165 33475.06717 86505.8649 50259.13482 47174.96201 79803.66497 64164.45324 0.876508121 0.538252077 1.195102866 1.283422947 0.521707355 1.348189855 0.783286263 0.735219574 1.243736383 1 15.96948665 -4.758364988 24.99998851 1.000136487 0.707380131 0.174844969 0.264962906 135.8988968 1105033.468 0.066304218 0.160561045 1.74E-05 4.758364988 -0.292756357 KT(ph)PELGIVPPPPIPR ddPTM_HeLa_A485_30min_R1 1 KTPELGIVPPPPIPR 15 1 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 KT(1)PELGIVPPPPIPR 54.964 0.035521 209920000 78405 69105 62648 115670 102070 76363 99526 101240 79133 157730 TRUE FALSE FALSE 95845.92176 77186.22862 85824.1022 121988.7592 91907.55241 80361.2486 78261.45705 76410.73126 95014.26725 118410.8138 0.809435546 0.651851179 0.72479953 1.030216374 0.776175329 0.678664777 0.660931671 0.645301969 0.802412079 1 16.85344131 -6.010592023 24.66090023 0.729055836 0.801996861 0.004473647 0.131768503 1405.300631 3271901.433 0.042777013 0.045537846 9.76E-07 6.010592023 0.072941025 KT(ph)PELGIVPPPPIPR ddPTM_HeLa_A486_30min_R1 1 KTPELGIVPPPPIPR 15 1 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 KT(1)PELGIVPPPPIPR 120.4 6.19E-05 243500000 170410 172940 98020 84260 142100 210730 212520 213210 137720 266280 TRUE FALSE FALSE 158465.139 159235.6046 135975.9691 196161.5383 124276.493 184732.2751 159345.2482 164666.7373 149657.6805 199601.7548 0.793906542 0.797766556 0.681236341 0.982764598 0.622622246 0.925504264 0.798315868 0.824976401 0.749781387 1 17.60676488 -10.80554738 2.628443238 1.061963376 0.798935555 0.273849641 0.098931059 85156452.4 58710486.89 33569005.05 0.022391672 1.56E-11 10.80554738 -0.263027821 KT(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK ddPTM_HeLa_A486_30min_R1 2 KTPESFLGPNAALVDLDSLVSRPGPTPPGAK 31 2 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 KT(0.999)PES(0.001)FLGPNAALVDLDSLVSRPGPTPPGAK;KT(0.961)PES(0.039)FLGPNAALVDLDSLVSRPGPTPPGAK ; 199.58 5.72E-29 150498000 22630.3 18644.6 6370.2 7837.7 9832.2 21180.3 23852.5 19647 11142 31684 TRUE FALSE FALSE 21044.03283 17167.13399 8836.91204 18246.5617 8598.953794 18567.28993 17884.35221 15173.80699 12107.79753 23750.12017 0.886060057 0.722823037 0.372078624 0.768272395 0.36205938 0.781776673 0.753021546 0.638893904 0.509799422 1 14.53564719 KT(ph)PPAPS(ph)PFDLPELK ddPTM_HeLa_A485_30min_R1 1 KTPPAPSPFDLPELK 15 1 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 2 0 KT(1)PPAPS(1)PFDLPELK 53.779 0.033721 32630000 103160 57182 43346 164690 105920 70760 121430 109880 59187 215020 TRUE FALSE FALSE 126107.5861 63868.93748 59381.48918 173686.5977 95374.23289 74464.88418 95485.48851 82931.75771 71065.288 161419.4711 0.781241477 0.395670591 0.367870671 1.075995333 0.59084714 0.461312899 0.591536373 0.513765515 0.440252266 1 17.30045509 -10.50384438 5.642785934 1.000669265 0.57801398 0.282349083 0.200940043 0.001717566 0.000151021 0.197517529 0.047832821 3.13E-11 10.50384438 -0.422655285 KT(ph)PPAPS(ph)PFDLPELK ddPTM_HeLa_A486_30min_R1 1 KTPPAPSPFDLPELK 15 1 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 2 0 KT(1)PPAPS(1)PFDLPELK 72.145 0.0067362 60535000 171340 151710 62060 96981 118140 205900 232000 202170 112530 272490 TRUE FALSE FALSE 159329.9508 139687.9471 86091.29402 225776.6691 103321.7796 180498.1514 173951.1462 156140.3043 122284.191 204256.7304 0.780047495 0.683884183 0.421485715 1.105357306 0.505842718 0.883682761 0.851629936 0.764431625 0.598678882 1 17.64002409 -5.23813887 24.99556679 0.797269097 0.634013709 0.172632097 0.184625962 1574.379705 1688910.117 0.047952698 0.082988994 5.78E-06 5.23813887 -0.163255388 KT(ph)PPAPSPFDLPELK ddPTM_HeLa_A485_30min_R1 2 KTPPAPSPFDLPELK 15 1 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 KT(0.999)PPAPS(0.001)PFDLPELK;KT(1)PPAPSPFDLPELK ; 122.53 3.24E-05 514410000 1160640 702990 452750 1865510 1111520 986490 1610500 1336460 828990 2492700 TRUE FALSE FALSE 1418820.364 785198.5653 620241.0655 1967418.088 1000853.166 1038141.091 1266403.518 1008691.09 995360.6891 1871315.765 0.758193989 0.419597045 0.331446503 1.051355482 0.534839275 0.554765321 0.676744963 0.53902773 0.531904186 1 20.83562159 -10.34923101 4.97117602 1.000234482 0.597099994 0.289300542 0.188152391 0.000485466 6.36E-05 0.180872729 0.043842885 4.47E-11 10.34923101 -0.403134488 KT(ph)PPAPSPFDLPELK ddPTM_HeLa_A486_30min_R1 2 KTPPAPSPFDLPELK 15 1 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 KT(1)PPAPSPFDLPELK;KT(1)PPAPSPFDLPELK ; 152.04 3.79E-08 784010000 1961270 1677880 642070 1024600 1222620 2178000 2741400 2454600 1369750 2879900 TRUE FALSE FALSE 1823795.101 1544918.678 890696.6992 2385320.58 1069267.599 1909300.504 2055472.724 1895741.164 1488481.033 2158754.295 0.844836814 0.715652857 0.412597534 1.104952326 0.495316953 0.884445492 0.952156866 0.878164397 0.68950924 1 21.04176762 KT(ph)PPEDCEGPFRPAEILK ddPTM_HeLa_A485_30min_R1 2 KTPPEDCEGPFRPAEILK 18 2 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 KT(1)PPEDCEGPFRPAEILK;KT(1)PPEDCEGPFRPAEILK ; 105.16 0.00014272 642380000 353100 229270 156298 559090 315410 281790 431050 351230 249270 746710 TRUE FALSE FALSE 431645.8768 256081.1321 214119.1343 589631.671 284006.6729 296544.0887 338952.6461 265090.2918 299296.2026 560568.9392 0.770013903 0.45682362 0.381967532 1.051845063 0.506640046 0.529005565 0.604658272 0.472895077 0.533915067 1 19.09653228 -10.51929747 5.985686373 1.000548996 0.586091989 0.311467099 0.182915951 0.001330298 0.000106834 0.175812377 0.042586734 3.02E-11 10.51929747 -0.414457008 KT(ph)PPEDCEGPFRPAEILK ddPTM_HeLa_A486_30min_R1 2 KTPPEDCEGPFRPAEILK 18 2 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 KT(1)PPEDCEGPFRPAEILK;KT(1)PPEDCEGPFRPAEILK ; 123.32 1.35E-05 694850000 502240 450580 156769 218525 294360 569730 660640 566370 383050 770210 TRUE FALSE FALSE 467035.5696 414874.3998 217474.1552 508737.2436 257438.624 499442.5052 495340.8845 437419.9148 416253.0824 577344.4028 0.808937555 0.718590841 0.376680114 0.881167707 0.445901307 0.865068584 0.857964297 0.757641215 0.720978813 1 19.13907266 -6.316582344 24.99870237 0.826285349 0.648347674 0.272894896 0.157544353 448.0184165 203104.8455 0.053587762 0.047259983 4.82E-07 6.316582344 -0.177937675 KT(ph)PSKPPAQLS(ph)PSVPK ddPTM_HeLa_A486_30min_R1 1 KTPSKPPAQLSPSVPK 16 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 2 0 KT(0.999)PS(0.007)KPPAQLS(0.986)PS(0.008)VPK 78.976 0.023706 600020000 261440 240320 60059 174690 133650 318210 363740 322730 179490 464200 TRUE FALSE FALSE 243114.4061 221276.168 83315.45324 406687.1483 116886.3708 278952.4855 272728.4048 249251.4241 195048.3377 347961.2986 0.698682316 0.635921779 0.23943885 1.168771211 0.335917734 0.801676757 0.783789479 0.716319387 0.560546068 1 18.40856733 -14 0.202470544 2.520349833 0.61053363 0.145926804 0.243679297 274.9785758 2.726587249 169.8167824 0.543666572 1.00E-14 14 -1.909816203 KT(ph)PSRPGS(ph)R ddPTM_HeLa_A485_30min_R1 2 KTPSRPGSR 9 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 2 0 KT(0.953)PS(0.053)RPGS(0.994)R;KT(0.984)PS(0.016)RPGS(0.999)R ; 69.716 0.012411 2317500000 3141790 2885820 1970120 3839500 3435110 3259630 4555700 4832100 2600490 5625400 TRUE FALSE FALSE 3840670.346 3223291.546 2698949.372 4049242.163 3093098.387 3430299.186 3582337.478 3647019.899 3122384.49 4223091.308 0.909445254 0.76325405 0.639093303 0.958833676 0.732425174 0.812272086 0.848273745 0.863590113 0.739359929 1 22.00986801 -11.42540274 2.279916755 2.806690266 0.806393652 0.297725145 0.088731516 5584967.226 455607.8736 52547124.63 0.021777352 3.75E-12 11.42540274 -2.000296613 KT(ph)PSRPGS(ph)R ddPTM_HeLa_A486_30min_R1 2 KTPSRPGSR 9 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 2 0 KT(0.988)PS(0.036)RPGS(0.976)R;KT(0.755)PS(0.246)RPGS(1)R ; 76.759 0.008524 1332640000 3344100 2867700 2107010 1587410 3215900 3664600 4357600 3762100 2871100 4601400 TRUE FALSE FALSE 3109695.859 2640453.008 2922900.7 3695570.703 2812531.835 3212498.911 3267282.39 2905551.956 3119969.26 3449179.49 0.901575539 0.765530763 0.847419135 1.071434732 0.815420549 0.931380614 0.947263661 0.842389317 0.904554045 1 21.71782178 -10.33520989 0.014976381 1.928829133 1.92E-06 0.146597206 0.079402767 5405.795697 13.74158206 976.3643486 799.1155907 4.62E-11 10.33520989 -1.928827217 KT(ph)QSFYMSSPGPSEYCPSER ddPTM_HeLa_A485_30min_R1 1 KTQSFYMSSPGPSEYCPSER 20 1 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 KT(0.5)QS(0.5)FYMSSPGPSEYCPSER 92.886 3.28E-05 0 56067 65614 40606 51525 60375 55057 73846 76328 34640 59090 TRUE FALSE FALSE 68538.91072 73286.98653 55627.84916 54339.68028 54363.85301 57939.69939 58068.19883 57608.43832 41591.93026 44359.95047 1.545062832 1.652098024 1.254010624 1.224971618 1.22551654 1.306126332 1.309023076 1.298658761 0.937600918 1 15.43697013 -1 0.192653432 1.019325948 3.676603223 0.641661007 0.121605237 37.92697845 0.446879276 0.256424336 30.09861441 0.1 1 2.657277275 KT(ph)S(ph)LS(ph)LT(ph)PDVP ddPTM_HeLa_A485_30min_R1 1 KTSLSLTPDVP 11 1 C9JHQ1 C9JHQ1 SMARCAL1 4 0 KT(1)S(1)LS(1)LT(1)PDVP 43.544 0.021804 3307300000 2955.9 5103 3092.3 3220.4 4113.6 3186.6 3711.8 3490.6 2979.8 4008.6 TRUE FALSE FALSE 3613.429757 5699.75146 4236.270451 3396.322298 3704.03554 3353.445449 2918.743607 2634.524877 3577.818528 3009.329793 1.20074236 1.894026861 1.407712263 1.128597572 1.230850653 1.114349599 0.969898219 0.875452363 1.188908752 1 11.55522651 -5.219911618 2.822638114 1.063535852 1.566152095 0.536195813 0.184833836 0.191634483 3.032266576 0.052351028 0.096813244 6.03E-06 5.219911618 0.502616243 KT(ph)S(ph)TLQTVRIER ddPTM_HeLa_A485_30min_R1 2 KTSTLQTVRIER 12 2 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 2 0 KT(0.636)S(0.729)T(0.636)LQTVRIER;KT(0.64)S(0.719)T(0.64)LQTVRIER ; 69.314 0.010422 4103700000 3550100 4109300 3595000 4169300 5205600 4698600 5763400 5581700 4007300 5747000 TRUE FALSE FALSE 4339807.497 4589846.889 4924940.1 4397058.302 4687312.186 4944611.431 4532002.507 4212779.323 4811528.353 4314378.666 1.005893973 1.063848875 1.141517813 1.019163741 1.086439682 1.146077295 1.050441526 0.976450991 1.115230889 1 22.04072137 -8.708821054 0.550266873 0.997818133 1.07298072 0.106993416 0.054353844 5.826756904 2.686898017 0.104067728 0.025570341 1.96E-09 8.708821054 0.075162587 KT(ph)S(ph)TLQTVRIER ddPTM_HeLa_A486_30min_R1 1 KTSTLQTVRIER 12 2 Q8N5I9;A0A087WT30;J3KN91 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 2 0 KT(0.642)S(0.717)T(0.642)LQTVRIER 62.68 0.019914 1989000000 1888800 1845800 1329600 758940 2167900 1965700 2340200 2384500 1597100 2539600 TRUE FALSE FALSE 1756404.874 1699532.086 1844456.728 1766850.675 1895981.767 1723191.92 1754657.208 1841601.403 1735537.914 1903667.63 0.922642612 0.892767235 0.968896408 0.928129809 0.995962603 0.905195788 0.92172456 0.9673965 0.91168116 1 20.86035018 KT(ph)SDANETEDHLESLICK ddPTM_HeLa_A485_30min_R1 3 KTSDANETEDHLESLICK 18 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK ;; 322.88 7.81E-90 4750880000 3255250 2106590 1626170 4765610 2828270 2101100 3758800 2582590 1798670 5034330 TRUE FALSE FALSE 3979369.132 2352937.376 2227757.954 5025943.207 2546677.508 2211110.347 2955701.673 1949205.753 2159646.571 3779364.181 1.052920264 0.622574926 0.589453106 1.329838292 0.673837552 0.585048236 0.782063207 0.51574965 0.57143119 1 21.84971211 -5.950573085 24.99996169 0.662194097 0.875003863 0.154877509 0.234073708 210.1532243 106293.6807 0.072411591 0.082107009 1.12E-06 5.950573085 0.212809766 KT(ph)SDANETEDHLESLICK ddPTM_HeLa_A486_30min_R1 6 KTSDANETEDHLESLICK 18 1 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK;KT(0.5)S(0.5)DANETEDHLESLICK ;;;;; 257.2 8.36E-58 7473180000 3146966 2946768 1221976 863216 2218731 2990686 3811627 3500248 2265605 3953197 TRUE FALSE FALSE 2926379.934 2713255.372 1695157.833 2009610.473 1940437.069 2621725.568 2857917.609 2703317.94 2461989.466 2963290.74 0.987543981 0.915622397 0.572052485 0.678168512 0.654825071 0.884734506 0.964440502 0.912268885 0.830829534 1 21.49876875 -6.438081862 6.815381294 0.920329631 0.755478173 0.300239753 0.12068954 0.35946868 24.54155134 0.04693947 0.04116046 3.65E-07 6.438081862 -0.164851458 KT(ph)SFDQDSDVDIFPSDFPTEPPSLPR ddPTM_HeLa_A485_30min_R1 2 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KT(0.362)S(0.362)FDQDS(0.277)DVDIFPSDFPTEPPSLPR;KT(0.364)S(0.364)FDQDS(0.273)DVDIFPSDFPTEPPSLPR ; 142.38 6.19E-09 117987000 127529 130251 91263 155313 167606 146833 212437 239151 131634 232711 TRUE FALSE FALSE 155897.3861 145482.7214 125024.9815 163797.3559 150918.5581 154520.9488 167048.0995 180498.8423 158051.7364 174700.4304 0.892369788 0.832755369 0.71565354 0.937589882 0.863870557 0.884490945 0.956197412 1.033190599 0.904701471 1 17.41452364 -6.435965862 0.981037263 0.984246462 0.829491336 0.488425693 0.060858495 0.461948314 0.925857518 0.038841001 0.029870131 3.66E-07 6.435965862 -0.154755125 KT(ph)SFDQDSDVDIFPSDFPTEPPSLPR ddPTM_HeLa_A486_30min_R1 2 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KT(0.333)S(0.333)FDQDS(0.333)DVDIFPSDFPTEPPSLPR;KT(0.372)S(0.372)FDQDS(0.257)DVDIFPSDFPTEPPSLPR ; 158.77 4.07E-10 96995000 114448 127627 76394 49109 99674 125662 157352 147641 111486 166126 TRUE FALSE FALSE 106425.7862 117513.3717 105975.8027 114328.2338 87171.9575 110159.1001 117980.8653 114026.3673 121149.6962 124526.9683 0.854640466 0.943678091 0.851026923 0.918100195 0.700024731 0.884620429 0.947432246 0.915676089 0.972879192 1 16.92609869 -6.696877504 4.419673029 0.95255632 0.856067212 0.379398321 0.063371531 0.258188855 9.919274495 0.026185091 0.019477963 2.01E-07 6.696877504 -0.096489108 KT(ph)SLFEEDEEDDLFAIAK ddPTM_HeLa_A486_30min_R1 2 KTSLFEEDEEDDLFAIAK 18 1 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 KT(0.887)S(0.113)LFEEDEEDDLFAIAK;KT(0.5)S(0.5)LFEEDEEDDLFAIAK ; 124.81 8.20E-07 28619000 58641 58763 38303 40589 73040 75767 91794 90111 55856 98357 TRUE FALSE FALSE 54530.56872 54106.40587 53134.94739 94493.24325 63878.64213 66419.63788 68826.1703 69594.69241 60697.64305 73727.767 0.739620511 0.733867416 0.720691126 1.281650687 0.866412272 0.900876842 0.93351763 0.943941411 0.823267075 1 16.16992044 KT(ph)SPASLDFPESQK ddPTM_HeLa_A485_30min_R1 5 KTSPASLDFPESQK 14 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KT(0.499)S(0.499)PAS(0.003)LDFPESQK;KT(0.5)S(0.5)PASLDFPESQK;KT(0.499)S(0.499)PAS(0.002)LDFPESQK;KT(0.5)S(0.5)PASLDFPESQK;KT(0.5)S(0.5)PASLDFPESQK ;;;; 204.23 5.50E-22 6760780000 4352750 3775830 2684200 6017110 5179980 4960350 7525280 7325270 3727590 8111470 TRUE FALSE FALSE 5321004.221 4217380.473 3677197.279 6345809.483 4664243.003 5220066.256 5917442.452 5528736.047 4475683.122 6089429.81 0.873809928 0.692573953 0.603865615 1.042102411 0.765957265 0.857233997 0.97175641 0.907923438 0.734992152 1 22.53787572 -5.253843847 24.99683551 0.889282006 0.720332254 0.342659863 0.10986079 683.5627374 2249593.344 0.029484402 0.049846903 5.57E-06 5.253843847 -0.168949752 KT(ph)SPASLDFPESQK ddPTM_HeLa_A486_30min_R1 3 KTSPASLDFPESQK 14 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KT(0.691)S(0.309)PASLDFPESQK;KT(0.5)S(0.5)PASLDFPESQK;KT(0.5)S(0.5)PASLDFPESQK ;; 201.18 7.00E-22 1845770000 3282620 3134480 1380180 1509240 2861180 3704200 4675570 4317870 2557060 5114400 TRUE FALSE FALSE 3052525.289 2886092.389 1914622.659 3513586.993 2502304.125 3247213.466 3505692.933 3334785.259 2778708.02 3833720.951 0.796230432 0.752817544 0.499416281 0.916495237 0.652708989 0.847013517 0.914436126 0.869856023 0.724807062 1 21.8703139 -6.384197338 6.230245775 0.868145842 0.72381367 0.283172334 0.117812446 0.338729767 15.87577524 0.040923488 0.035938495 4.13E-07 6.384197338 -0.144332172 KT(ph)STSPPPEKS(ph)GDEGS(ph)EDEAPS(ph)GED ddPTM_HeLa_A485_30min_R1 1 KTSTSPPPEKSGDEGSEDEAPSGED 25 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 4 0 KT(0.265)S(0.235)T(0.265)S(0.235)PPPEKS(1)GDEGS(1)EDEAPS(1)GED 114.23 1.73E-11 0 297280 213820 159360 645390 347020 329410 617480 579260 238410 826010 TRUE FALSE FALSE 363408.9104 238824.389 218313.8955 680646.0215 312469.4703 346657.3982 485550.3537 437195.5768 286256.7002 620100.9086 0.586048021 0.385137944 0.352061886 1.097637517 0.503901004 0.55903385 0.783018291 0.705039407 0.461629222 1 19.24214348 -14 0.122967748 2.171476151 0.440368806 0.239624769 0.20841822 233.8741104 1.847005783 69.37172075 1.920688911 1.00E-14 14 -1.731107345 KT(ph)TPILR ddPTM_HeLa_A485_30min_R1 4 KTTPILR 7 1 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 KT(0.924)T(0.076)PILR;KT(0.634)T(0.366)PILR;KT(0.985)T(0.015)PILR;KT(0.5)T(0.5)PILR ;;; 145.25 0.00070549 1894760000 1674030 1566080 1288590 1895050 1906920 1462250 1964240 1901830 1475180 2496370 TRUE FALSE FALSE 2046412.198 1749219.433 1765293.064 1998571.783 1717060.349 1538811.149 1544564.078 1435403.211 1771235.095 1874070.901 1.091960927 0.933379538 0.941956392 1.066433389 0.916219524 0.821106153 0.824175903 0.765927911 0.945127046 1 20.8377441 -5.981483598 6.117180406 0.854966637 0.99820531 0.401400193 0.077481655 0.153535481 20.70383686 0.023871969 0.026467388 1.04E-06 5.981483598 0.143238673 KT(ph)TPILR ddPTM_HeLa_A486_30min_R1 3 KTTPILR 7 1 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 KT(0.5)T(0.5)PILR;KT(0.5)T(0.5)PILR;KT(0.5)T(0.5)PILR ;; 121.6 0.00070549 374210000 840250 857090 505067 309007 718820 853270 892880 822860 712480 1007010 TRUE FALSE FALSE 781352.8141 789171.0669 700642.4686 719383.9123 628658.8929 748002.2228 669471.9801 635512.7409 774238.3401 754848.1415 1.035112589 1.045469974 0.928189963 0.953018061 0.832828298 0.990930734 0.886896242 0.841908069 1.025687549 1 19.52582691 -4.76501316 18.79619714 0.924426719 1.040292121 0.323333968 0.061547754 3.815268557 20085.16175 0.01525124 0.034232872 1.72E-05 4.76501316 0.115865402 KT(ph)VSLCDITITQMLEEDSNQGHLIGDFSK ddPTM_HeLa_A486_30min_R1 1 KTVSLCDITITQMLEEDSNQGHLIGDFSK 29 1 P30307-4;P30307-3;P30307-2;P30307;H0Y999 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 KT(0.601)VS(0.399)LCDITITQMLEEDSNQGHLIGDFSK 195.19 2.03E-21 191910000 164610 193960 115000 91384 244520 235720 345810 309010 167700 264500 TRUE FALSE FALSE 153071.689 178589.9032 159531.0798 212746.5703 213850.0215 206639.263 259284.6804 238655.1686 182236.371 198267.4784 0.77204638 0.900752381 0.804625555 1.073028073 1.078593541 1.042224699 1.307751944 1.203703051 0.91914404 1 17.59708853 -5.31832514 4.531424438 1.107291466 0.832392886 0.56404271 0.105433294 0.155438092 6.716414048 0.03096581 0.047994998 4.80E-06 5.31832514 -0.274898579 KTAEISSTALRS(ph)SPIMR ddPTM_HeLa_A485_30min_R1 2 KTAEISSTALRSSPIMR 17 2 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 KTAEISSTALRS(0.82)S(0.179)PIMR;KTAEISSTALRS(0.901)S(0.099)PIMR ; 153.83 1.37E-08 788420000 118139 353310 257530 125854 528860 537600 657710 1497990 231400 198346 TRUE FALSE FALSE 144418.613 394626.5311 352801.0637 132729.0853 476204.8415 565747.9047 517184.8855 1130605.604 277839.8575 148901.9925 0.969890399 2.650243456 2.369350858 0.891385556 3.198109263 3.799464972 3.473324143 7.592951477 1.865924376 1 17.18400353 -5.956142695 5.065811627 3.914916131 1.835702856 0.190648067 1.704386189 0.277532076 16.46209404 0.524871189 0.589601819 1.11E-06 5.956142695 -2.079213275 KTANDMIHAENMR ddPTM_HeLa_A485_30min_R1 2 KTANDMIHAENMR 13 1 P26038 P26038 MSN Moesin 0 0 ; ; 73.887 0.011944 240060000 222381 349530 246930 204742 321430 406130 445460 580620 271219 380090 FALSE FALSE TRUE 271848.8862 390404.493 338279.6826 215926.537 289427.3006 427394.3388 350283.8319 438222.0346 325650.1655 285340.558 0.952717301 1.368205402 1.185529617 0.756732721 1.014322333 1.49783943 1.227599169 1.535786001 1.141268412 1 18.1223253 -6.239406005 24.84543052 1.310679029 1.06349942 0.218840408 0.208413017 1096.385395 1236314.757 0.069339365 0.069285533 5.76E-07 6.239406005 -0.247179609 KTAPT(ph)LSPEHWK ddPTM_HeLa_A485_30min_R1 1 KTAPTLSPEHWK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KT(0.001)APT(0.5)LS(0.5)PEHWK 105.17 0.0004859 1904400000 2559600 2709000 1923500 2896700 3231600 3351100 4593100 5033500 2614000 4296400 TRUE FALSE FALSE 3128974.189 3025793.985 2635082.694 3054939.386 2909850.557 3526558.414 3611746.663 3799026.233 3138605.823 3225386.549 0.970108277 0.93811825 0.816981981 0.947154501 0.902171108 1.093375433 1.119787228 1.177851453 0.973094473 1 21.62104064 -6.262212067 24.98386765 1.086872784 0.912547611 0.580600951 0.066558497 46.24381182 1495217.877 0.022513262 0.02102489 5.47E-07 6.262212067 -0.174325173 KTAPTLS(ph)PEHWK ddPTM_HeLa_A485_30min_R1 1 KTAPTLSPEHWK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KT(0.003)APT(0.139)LS(0.859)PEHWK 123.92 3.81E-05 1752000000 656670 626570 450980 748250 886030 761250 1092700 1055300 592880 951120 TRUE FALSE FALSE 802743.976 699841.9111 617816.2688 789125.0028 797813.7422 801107.8729 859235.7185 796486.0204 711865.5778 714023.2881 1.124254614 0.980138775 0.86526067 1.105181044 1.11734975 1.121963228 1.203372121 1.115490256 0.996978095 1 19.4456116 -5.434019298 24.99986907 1.105857574 0.988294323 0.247680841 0.081696327 87.88986647 24724.40766 0.023343598 0.034624145 3.68E-06 5.434019298 -0.117563251 KTAS(ph)EPNLK ddPTM_HeLa_A485_30min_R1 2 KTASEPNLK 9 1 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 KT(0.003)AS(0.997)EPNLK;KTAS(1)EPNLK ; 148.89 4.63E-05 636730000 672470 564720 370520 994610 789660 817260 1213930 1217680 636330 1365400 TRUE FALSE FALSE 822058.6315 630759.0916 507590.7666 1048943.026 711038.6777 860050.4699 954563.9386 919042.0708 764035.5942 1025030.908 0.801984238 0.615356168 0.495195572 1.023328192 0.693675354 0.839048328 0.93125381 0.896599374 0.745378103 1 19.96723598 -5.258597208 24.99998526 0.864517764 0.635296415 0.456144157 0.118701275 232.1687619 2042166.667 0.032072314 0.052542402 5.51E-06 5.258597208 -0.229221348 KTAS(ph)EPNLK ddPTM_HeLa_A486_30min_R1 2 KTASEPNLK 9 1 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 KT(0.135)AS(0.865)EPNLK;KTAS(1)EPNLK ; 132.79 0.00012679 555140000 1018360 909090 412180 443960 806830 1094980 1354620 1275140 731260 1608180 TRUE FALSE FALSE 946978.2228 837050.3976 571787.1346 1033561.316 705629.858 959892.5005 1015679.748 984818.4581 794646.2056 1205481.261 0.785560302 0.694370311 0.474322707 0.857384806 0.585351163 0.796273266 0.842551254 0.81695045 0.659194159 1 20.20117779 -6.413391238 7.479395207 0.815085512 0.678975668 0.251651693 0.123834769 0.420595588 25.60670664 0.042386715 0.037278116 3.86E-07 6.413391238 -0.136109844 KTAS(ph)PEDSDMPDHDLEPPR ddPTM_HeLa_A486_30min_R1 1 KTASPEDSDMPDHDLEPPR 19 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 KT(0.209)AS(0.786)PEDS(0.006)DMPDHDLEPPR 173.47 6.31E-13 118520000 103430 89669 74315 45145 124450 111810 138520 127750 83382 135400 TRUE FALSE FALSE 96180.09111 82563.30187 103091.7582 105099.8415 108840.3205 98016.019 103860.8309 98664.11376 90609.6189 101494.9587 0.947634172 0.813471949 1.015732796 1.035517851 1.072371692 0.96572303 1.023310243 0.972108517 0.892749946 1 16.63104854 -4.777424463 24.99966649 1.000056215 0.880553051 0.421793772 0.054541552 192.2055167 300598.0309 0.014492689 0.030322973 1.67E-05 4.777424463 -0.119503164 KTATNDEESPLSVS(ph)SPEGTGTWLHYTSGVGTGR ddPTM_HeLa_A485_30min_R1 1 KTATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 33 1 A0A087WZV0;O43314;O43314-2;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 KTATNDEESPLS(0.003)VS(0.852)S(0.138)PEGT(0.006)GT(0.001)WLHYTSGVGTGR 164.2 2.34E-14 441280000 157400 233620 176850 120480 241920 239360 296540 391430 175350 189200 TRUE FALSE FALSE 192413.087 260939.8268 242274.1743 127061.5173 217833.5954 251892.5195 233181.8065 295431.1788 210541.1366 142035.922 1.354679044 1.83713967 1.705724657 0.894573116 1.533651434 1.773442352 1.641710092 2.079975084 1.482309078 1 17.11589632 -6.009888509 24.77688795 1.664504959 1.459214964 0.019730562 0.345413788 1284.464583 3218392.75 0.110269146 0.118040343 9.77E-07 6.009888509 -0.205289995 KTATNDEESPLSVS(ph)SPEGTGTWLHYTSGVGTGR ddPTM_HeLa_A486_30min_R1 2 KTATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 33 1 A0A087WZV0;O43314;O43314-2;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 KTATNDEESPLSVS(0.802)S(0.198)PEGTGTWLHYTSGVGTGR;KTATNDEESPLS(0.001)VS(0.784)S(0.214)PEGTGT(0.001)WLHYTSGVGTGR ; 270.72 1.45E-65 816260000 407350 437380 359370 44748 537830 349980 436820 510800 382190 324080 TRUE FALSE FALSE 378796.8686 402720.4159 498527.6883 104175.6054 470370.3463 306803.0259 327523.0158 394501.9907 415318.5369 242928.2586 1.559295204 1.657775091 2.052160136 0.4288328 1.936252081 1.262936752 1.348229381 1.623944423 1.709634521 1 17.8901708 KTATNDEESPLSVSS(ph)PEGTGTWLHYTSGVGTGR ddPTM_HeLa_A485_30min_R1 1 KTATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 33 1 A0A087WZV0;O43314;O43314-2;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 KTATNDEESPLSVS(0.172)S(0.828)PEGTGTWLHYTSGVGTGR 278.3 6.90E-78 522400000 386870 500640 456350 247490 605900 497400 620890 789710 397470 450440 TRUE FALSE FALSE 472927.8968 559185.493 625172.8553 261009.752 545574.4686 523443.0949 488231.7793 596032.3843 477238.5832 338153.5977 1.398559412 1.653643483 1.848783687 0.771867441 1.613392471 1.547944775 1.443816605 1.762608437 1.411307129 1 18.36731918 -8.028041751 22.83135255 0.999999984 1.505475401 0.227844022 0.277991902 1486.020508 1209905.593 0.266123154 0.068712703 9.37E-09 8.028041751 0.505475418 KTEAPAAPAAQETK ddPTM_HeLa_A485_30min_R1 1 KTEAPAAPAAQETK 14 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 0 188.47 6.65E-11 41526000 63880 53397 27608 84155 52855 61269 85344 78406 48237 144420 FALSE FALSE TRUE 78089.88562 59641.31466 37821.34806 88752.17456 47592.57061 64476.9501 67109.5572 59176.80556 57917.72344 108418.7519 0.720261802 0.550101469 0.348845079 0.818605389 0.438969918 0.594702937 0.618984779 0.545817071 0.534203931 1 16.72625478 -10.21117966 4.413604475 1.000140577 0.57139717 0.511336608 0.124754927 161672073.1 59.58002181 232357.9743 0.028610454 6.15E-11 10.21117966 -0.428743407 KTEAPAAPAAQETK ddPTM_HeLa_A486_30min_R1 1 KTEAPAAPAAQETK 14 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 0 98.694 0.0025711 11731000 7179.4 7170.4 5150.3 3467.4 8886.9 8101.6 8144.8 6964.2 6587.5 8085.3 FALSE FALSE TRUE 6676.161134 6602.19139 7144.63409 8072.282433 7772.222135 7102.106963 6106.884893 5378.603687 7158.509804 6060.688254 1.101551648 1.089346806 1.178848637 1.331908538 1.282399261 1.171831757 1.007622342 0.887457573 1.181138099 1 12.56526592 -6.726276707 5.106654451 1.008829154 1.199480228 0.441555752 0.095538761 0.181898631 11.46927893 0.040786158 0.03020326 1.88E-07 6.726276707 0.190651074 KTEAPAAPAAQETKS(ph)DGAPASDSKPGSSEAAPSSK ddPTM_HeLa_A485_30min_R1 1 KTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSK 35 3 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 KTEAPAAPAAQET(0.083)KS(0.915)DGAPAS(0.002)DSKPGSSEAAPSSK 131.01 1.45E-05 373450000 123700 67087 30623 237010 92444 134950 245180 235160 80565 495560 TRUE FALSE FALSE 151216.6382 74932.24107 41951.72203 249957.2562 83239.95077 142015.7733 192795.2901 177486.6413 96733.65651 372026.0121 0.406467917 0.201416672 0.112765561 0.671881127 0.223747663 0.381736139 0.518230671 0.477081267 0.260018529 1 18.50504397 -14 0.232098847 4.44751489 0.294055099 0.589907846 0.159505214 113.907572 1.140023538 184.713705 0.270787604 1.00E-14 14 -4.153459791 KTEAPAAPAAQETKS(ph)DGAPASDSKPGSSEAAPSSK ddPTM_HeLa_A486_30min_R1 1 KTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSK 35 3 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 KTEAPAAPAAQET(0.06)KS(0.922)DGAPAS(0.014)DS(0.001)KPGS(0.001)S(0.001)EAAPSSK 106.02 8.43E-05 3191600000 1345600 967680 273240 921350 1217900 1872600 2314600 2155200 982070 3474700 TRUE FALSE FALSE 1251280.389 890997.5126 379045.8456 2144949.362 1065139.626 1641577.651 1735462.599 1664508.008 1067196.618 2604612.503 0.480409423 0.34208448 0.14552869 0.823519568 0.408943605 0.630257917 0.666303566 0.639061667 0.409733355 1 21.31263732 -14 0.083597138 2.53185619 0.06941003 0.435920947 0.177134141 225.3346504 1.322553506 63.51376097 5.336732527 1.00E-14 14 -2.462446159 KTEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_A485_30min_R1 4 KTEFLDLDNSPLSPPSPR 18 1 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 KTEFLDLDNSPLS(0.008)PPS(0.992)PR;KTEFLDLDNSPLSPPS(1)PR;KTEFLDLDNSPLS(0.004)PPS(0.996)PR;KTEFLDLDNSPLSPPS(1)PR ;;; 180.83 6.02E-18 795580000 788887 732182 678089 937890 1016300 817560 1070190 1049470 722277 1236290 TRUE FALSE FALSE 964372.1915 817804.3158 928942.3387 989124.5558 915113.6036 860366.1774 841535.1639 792085.837 867231.3688 928105.6552 1.03907587 0.881154329 1.000901496 1.06574564 0.986001538 0.927013183 0.906723452 0.853443606 0.934410176 1 19.82392953 -6.299423165 3.929894704 0.912494089 0.993060397 0.272162229 0.056289624 0.292896741 9.903267856 0.020700648 0.018715044 5.02E-07 6.299423165 0.080566308 KTEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_A486_30min_R1 4 KTEFLDLDNSPLSPPSPR 18 1 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 KTEFLDLDNSPLSPPS(1)PR;KTEFLDLDNSPLS(0.001)PPS(0.999)PR;KTEFLDLDNSPLS(0.001)PPS(0.999)PR;KTEFLDLDNSPLS(0.001)PPS(0.999)PR ;;; 202.98 1.72E-25 777590000 886070 1054040 777740 329174 1091730 1056030 1124780 1108140 1006170 1171390 TRUE FALSE FALSE 823961.0687 970514.0317 1078901.757 766333.7075 954795.0434 925747.7555 843348.1473 855840.7125 1093385.626 878066.3195 0.938381362 1.105285569 1.228724679 0.872751511 1.087383746 1.054302773 0.960460649 0.974688009 1.245219867 1 19.74397038 -11.11337401 2.897958811 0.894381235 1.049564454 0.017665518 0.114938021 83230501.71 1616082.96 58613245.39 0.027066506 7.70E-12 11.11337401 0.155183218 KTEMDKS(ph)PFNSPSPQDSPR ddPTM_HeLa_A485_30min_R1 1 KTEMDKSPFNSPSPQDSPR 19 2 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 KTEMDKS(1)PFNSPSPQDSPR 165.47 8.88E-13 628400000 234450 181950 139510 389080 294300 307330 490440 475550 255860 597670 TRUE FALSE FALSE 286602.5937 203227.4697 191120.5545 410334.4552 264998.4587 323421.3236 385653.4875 358920.6169 307208.7551 448681.8683 0.638765713 0.452943353 0.425960058 0.914533179 0.590615484 0.720825481 0.859525456 0.799944554 0.684691709 1 18.77533336 -4.36274715 0.133921783 1.094696499 2.23E-17 0.474738901 0.130295342 26.85643133 0.625920019 0.96440683 5.442578592 4.34E-05 4.36274715 -1.094696499 KTEMDKS(ph)PFNSPSPQDSPR ddPTM_HeLa_A486_30min_R1 2 KTEMDKSPFNSPSPQDSPR 19 2 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 KT(0.007)EMDKS(0.993)PFNSPSPQDSPR;KTEMDKS(1)PFNSPSPQDSPR ; 165.65 8.76E-13 1296890000 684700 636530 324660 377140 589640 762020 1003610 910700 565880 1089720 TRUE FALSE FALSE 636706.0658 586089.0446 450377.0467 878000.9796 515681.853 668009.7201 752496.1629 703353.4904 614930.934 816847.0191 0.779467943 0.717501602 0.551360336 1.074865867 0.631307749 0.817790485 0.921220431 0.861059016 0.752810403 1 19.63970639 -13.99998934 0.034321598 2.122236989 0.083664728 0.211505179 0.135505383 1728.610331 4.442477216 219.1729639 77.92277058 1.00E-14 13.99998934 -2.038572261 KTEMDKSPFNSPS(ph)PQDSPR ddPTM_HeLa_A485_30min_R1 3 KTEMDKSPFNSPSPQDSPR 19 2 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 KTEMDKSPFNS(0.29)PS(0.709)PQDS(0.001)PR;KTEMDKSPFNS(0.249)PS(0.751)PQDSPR;KTEMDKSPFNS(0.006)PS(0.994)PQDSPR ;; 207.6 3.99E-26 1958100000 1185526 1218842 766849 1532120 1583060 1648980 2231460 2673730 1191360 2073240 TRUE FALSE FALSE 1449242.169 1361374.969 1050538.356 1615815.836 1425444.988 1735318.043 1754690.342 2017993.525 1430455.024 1556419.423 0.931138578 0.874683873 0.674971245 1.038162215 0.915848882 1.114942423 1.127389131 1.296561515 0.919067832 1 20.56979946 -5.908355754 1.481573302 1.112629308 0.844765498 0.407712423 0.12347645 0.354720308 1.611358169 0.047721662 0.057613015 1.23E-06 5.908355754 -0.26786381 KTEMDKSPFNSPS(ph)PQDSPR ddPTM_HeLa_A486_30min_R1 2 KTEMDKSPFNSPSPQDSPR 19 2 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 KTEMDKSPFNS(0.088)PS(0.912)PQDSPR;KTEMDKS(0.002)PFNS(0.068)PS(0.919)PQDS(0.01)PR ; 171.05 5.06E-13 1061140000 700570 603910 289829 415300 642571 726580 1011090 972260 500844 1230810 TRUE FALSE FALSE 651463.6607 556053.9722 402058.5507 966839.3881 561973.7534 636941.9469 758104.5878 750897.6223 544257.5612 922607.1648 0.706111643 0.602698519 0.435785203 1.04794264 0.609114881 0.690371776 0.821698136 0.813886615 0.589912567 1 19.81535697 -14 0.130176533 1.933927038 0.588186229 0.240247641 0.15799239 214.1808468 1.755573634 52.79521436 1.1969735 1.00E-14 14 -1.345740809 KTES(ph)PIKLSPATPSR ddPTM_HeLa_A485_30min_R1 2 KTESPIKLSPATPSR 15 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 KT(0.008)ES(0.992)PIKLSPATPSR;KTES(1)PIKLSPATPSR ; 155.88 1.01E-08 2937800000 1594680 1457170 944540 2211670 1983020 1929740 3370400 3422000 1293890 3050400 TRUE FALSE FALSE 1949411.064 1627573.356 1293964.652 2332487.932 1785583.566 2030778.202 2650286.506 2582749.135 1553561.855 2289991.418 0.851274397 0.710733386 0.565052184 1.018557499 0.779733737 0.886806032 1.157334689 1.127842276 0.678413833 1 21.12691076 -5.798199762 1.178642266 0.98792192 0.727106801 0.26099009 0.161121985 0.615980703 1.811811946 0.06930263 0.097817895 1.59E-06 5.798199762 -0.260815119 KTES(ph)PIKLSPATPSR ddPTM_HeLa_A486_30min_R1 2 KTESPIKLSPATPSR 15 2 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 KT(0.026)ES(0.974)PIKLSPATPSR;KTES(1)PIKLSPATPSR ; 188.86 2.19E-18 3307100000 3920400 3136700 1498880 2046350 3181800 3741900 5655700 5131600 2453200 5846300 TRUE FALSE FALSE 3645600.205 2888136.468 2079286.477 4764006.217 2782708.975 3280262.423 4240584.04 3963246.702 2665845.351 4382348.427 0.831882783 0.659038531 0.474468544 1.087089787 0.634981226 0.748517029 0.967651046 0.904365951 0.608314331 1 22.06327276 -5.247727593 24.90020555 0.837844736 0.655520845 0.22246192 0.165953405 1238.563239 2249191.251 0.044409805 0.076401945 5.65E-06 5.247727593 -0.182323891 KTES(ph)PSLGK ddPTM_HeLa_A485_30min_R1 3 KTESPSLGK 9 1 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 KT(0.172)ES(0.824)PS(0.005)LGK;KT(0.048)ES(0.945)PS(0.007)LGK;KT(0.065)ES(0.929)PS(0.006)LGK ;; 77.597 0.0057677 827250000 1365920 955450 453982 2027020 783860 1328740 1980280 1800140 908720 4138280 TRUE FALSE FALSE 1669764.192 1067181.566 621928.8336 2137750.97 705816.1461 1398310.772 1557177.001 1358652.842 1091091.769 3106682.955 0.537474926 0.343511579 0.200190635 0.688113657 0.227192847 0.450097674 0.501234604 0.437332313 0.351207955 1 21.56694359 -10.82838668 2.42698285 1.224797965 0.413433577 0.619106027 0.137615086 11428610.9 6935054.408 14973557.73 0.033580692 1.48E-11 10.82838668 -0.811364389 KTES(ph)PSLGK ddPTM_HeLa_A486_30min_R1 2 KTESPSLGK 9 1 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 KT(0.204)ES(0.796)PSLGK;KT(0.014)ES(0.984)PS(0.002)LGK ; 113.77 0.00044667 763580000 1718400 1506700 731080 670090 1650580 2153200 2085200 1869600 1749720 3612800 TRUE FALSE FALSE 1597949.034 1387303.605 1014173.755 1560003.384 1443548.865 1887560.076 1563460.905 1443932.893 1901387.138 2708131.365 0.590055953 0.512273379 0.374492083 0.576044207 0.533042409 0.696997236 0.577320925 0.533184214 0.702102994 1 21.36886629 -13.84873046 0.178477111 2.724018684 0.464834142 0.766801594 0.075987675 60.2709697 0.607471082 36.68107499 0.252110643 1.42E-14 13.84873046 -2.259184542 KTET(ph)QEKNPLPSK ddPTM_HeLa_A485_30min_R1 1 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 KT(0.028)ET(0.972)QEKNPLPSK 109.42 0.00033014 633390000 1620600 879710 574570 2920600 1272200 1291500 2346500 1775100 1350000 4712700 TRUE FALSE FALSE 1981096.879 982584.432 787127.3529 3080144.983 1145535.301 1359120.943 1845151.106 1339753.942 1620932.617 3537910.621 0.559962388 0.277730146 0.222483674 0.870611305 0.323788649 0.384159208 0.521536948 0.378685073 0.458160986 1 21.75446617 -10.72085489 1.700656564 1.187547611 0.440302717 0.480273721 0.173436105 81792.23197 36948.58525 64533.17137 0.046548547 1.90E-11 10.72085489 -0.747244893 KTET(ph)QEKNPLPSK ddPTM_HeLa_A486_30min_R1 2 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 KT(0.061)ET(0.939)QEKNPLPSK;KT(0.038)ET(0.962)QEKNPLPSK ; 159.8 7.80E-10 1950800000 2192620 2134260 690910 1284480 1427070 3589100 4404700 4487000 1751310 4427500 TRUE FALSE FALSE 2038928.661 1965133.465 958448.8552 2990334.354 1248073.574 3146313.333 3302597.472 3465408.051 1903114.961 3318825.182 0.614352534 0.592117197 0.288791606 0.901021955 0.376058848 0.948020206 0.995110405 1.044167095 0.573430312 1 21.66224121 -6.278176815 24.34289459 0.920091389 0.561053177 0.459162872 0.193931899 529.9211906 770713.6733 0.065720638 0.058128752 5.27E-07 6.278176815 -0.359038211 KTET(ph)QEKNPLPSKETIEQEK ddPTM_HeLa_A486_30min_R1 1 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 KT(0.187)ET(0.813)QEKNPLPSKETIEQEK 117.21 5.09E-06 657140000 648980 481980 107630 564240 409440 1014100 1724800 1734200 404360 1725400 TRUE FALSE FALSE 603489.8533 443786.1495 149307.2184 1313579.235 358084.2173 888990.6526 1293236.797 1339360.517 439410.2504 1293348.61 0.466610355 0.343129568 0.115442362 1.015642052 0.27686597 0.687355788 0.999913548 1.035575797 0.339746181 1 20.30267976 -5.83525409 0.820415929 0.839830438 0.333547849 0.282811274 0.290034065 0.857365483 1.264336725 0.161024336 0.247784543 1.46E-06 5.83525409 -0.506282589 KTETLLYAMLPK ddPTM_HeLa_A485_30min_R1 1 KTETLLYAMLPK 12 1 O75343 O75343 GUCY1B2 Guanylate cyclase soluble subunit beta-2 0 0 41.54 0.035551 557350000 571280 295830 152250 1032100 277720 558350 650810 508920 350520 1012500 FALSE FALSE TRUE 698359.2651 330424.7451 208573.6107 1088481.01 250069.2217 587584.3426 511759.1269 384106.572 420866.1488 760102.3837 0.918769997 0.434710839 0.274401995 1.43201894 0.328994129 0.773033153 0.673276571 0.505335308 0.553696657 1 19.53583423 -10.28227527 3.887895365 1.000553734 0.650131874 0.094906743 0.319394527 423491382.4 795548598.3 2882950.188 0.076715915 5.22E-11 10.28227527 -0.35042186 KTETQEK(ac)NPLPSKETIEQEK ddPTM_HeLa_A485_30min_R1 1 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 K(0.085)TETQEK(0.914)NPLPSKETIEQEK 85.42 0.0010459 24387000 5410.7 4391.6 3795.2 6791.6 6018.3 6125.8 11047 9976.2 4486.2 13000 FALSE TRUE FALSE 6614.291548 4905.159418 5199.202411 7162.607911 5419.09692 6446.537416 8686.718204 7529.521308 5386.53919 9759.339247 0.677739689 0.502611836 0.532741232 0.733923448 0.555272932 0.660550602 0.890092862 0.771519579 0.551936873 1 13.25256776 -6.563765555 7.451374406 0.783936359 0.599483366 0.374019294 0.12326598 0.253492461 37.6841432 0.04633391 0.035966545 2.73E-07 6.563765555 -0.184452993 KTETQEK(ac)NPLPSKETIEQEK ddPTM_HeLa_A486_30min_R1 2 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ; KTETQEK(1)NPLPSKETIEQEK;KTETQEK(1)NPLPSKETIEQEK 188.8 9.30E-19 36305000 49167 38044 25368 27658 43475 50383 85226 80341 30708 120076 FALSE TRUE FALSE 45720.6472 35029.25489 35191.16898 64389.22176 38021.96011 44167.25772 63901.55337 62049.10813 33369.79416 90008.18804 0.507960978 0.389178536 0.390977418 0.715370714 0.422427792 0.490702665 0.709952669 0.689371817 0.370741761 1 16.45776863 -14 0.181686562 2.925722186 0.430965505 0.546086628 0.130678636 103.2868755 0.997012911 71.97742618 0.401350891 1.00E-14 14 -2.494756681 KTETQEKNPLPSK ddPTM_HeLa_A485_30min_R1 1 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 103.6 0.0018073 29757000 130620 94264 65099 153210 131140 128170 173100 136240 111370 224460 FALSE FALSE TRUE 159675.9684 105287.3548 89181.8291 161579.4744 118083.2411 134880.783 136115.7709 102826.9264 133720.9375 168506.2529 0.947596695 0.624827584 0.529249375 0.958893048 0.700764744 0.80044972 0.807778753 0.610226176 0.793566619 1 17.3624426 -8.026029463 23.35813206 1.000000007 0.742659822 0.244949755 0.132309637 1538.465386 1380576.938 0.124962957 0.032265297 9.42E-09 8.026029463 -0.257340185 KTETQEKNPLPSK ddPTM_HeLa_A486_30min_R1 1 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 120.53 0.00028344 12822000 50052 50364 20373 20803 47878 50719 64551 58870 37532 61961 FALSE FALSE TRUE 46543.61327 46372.97322 28261.97121 48430.43533 41872.6948 44461.80545 48399.65705 45466.58612 40785.30398 46445.5623 1.002111094 0.998437115 0.608496696 1.042735472 0.9015435 0.95728856 1.042072798 0.978922073 0.878131343 1 15.50325314 KTETQEKNPLPSKETIEQEK ddPTM_HeLa_A485_30min_R1 1 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 139.69 2.09E-10 14020000 64506 49305 23771 75598 74157 91117 155850 169490 54148 122530 FALSE FALSE TRUE 78855.13716 55070.79085 32564.88209 79727.72732 66773.6687 95887.74523 122551.3743 127922.3117 65015.00693 91985.526 0.857255925 0.598689742 0.354021807 0.866742093 0.725914952 1.042422101 1.33228976 1.3906787 0.706796055 1 16.48911925 -6.206553371 2.166591703 1.146127856 0.643829176 0.464287557 0.221496566 0.268297962 2.473472212 0.086642364 0.082778498 6.22E-07 6.206553371 -0.50229868 KTEVQAHS(ph)PSR ddPTM_HeLa_A485_30min_R1 5 KTEVQAHSPSR 11 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KTEVQAHS(0.5)PS(0.5)R;KTEVQAHS(0.945)PS(0.055)R;KTEVQAHS(0.811)PS(0.189)R;KTEVQAHS(0.982)PS(0.018)R;KTEVQAHS(0.886)PS(0.114)R ;;;; 184.48 8.96E-11 1013936000 998128 1252680 1062535 1085880 1503640 1233370 1510290 1760690 1240360 1477540 TRUE FALSE FALSE 1220158.13 1399170.029 1455610.912 1145198.875 1353932.322 1297947.346 1187604.204 1328878.017 1489288.875 1109216.47 1.100018042 1.261403943 1.312287503 1.032439479 1.220620464 1.170147921 1.070669464 1.198033073 1.342649442 1 20.08110951 -5.239224544 24.99001484 1.156797913 1.228253216 0.094664356 0.10609731 2163.367035 2433623.024 0.028398599 0.04912749 5.76E-06 5.239224544 0.071455303 KTEVQAHS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 KTEVQAHSPSR 11 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KTEVQAHS(0.724)PS(0.276)R;KTEVQAHS(0.954)PS(0.046)R;KTEVQAHS(0.894)PS(0.106)R;KTEVQAHS(0.974)PS(0.026)R ;;; 119.45 0.00011926 847487000 782700 768310 577000 236420 829270 732860 818190 812150 674100 827370 TRUE FALSE FALSE 727836.7719 707426.3175 800429.8526 550397.708 725255.224 642447.1844 613470.2081 627241.1741 732531.5308 620191.1667 1.173568427 1.140658486 1.290617951 0.887464604 1.169405923 1.035885738 0.989163085 1.011367475 1.181138285 1 19.24235345 -5.246920053 24.99911969 1.042879058 1.195519299 0.415667658 0.088079253 819.2254217 1410525.737 0.023036385 0.039665143 5.66E-06 5.246920053 0.152640241 KTEVQAHS(ph)PSRK ddPTM_HeLa_A485_30min_R1 1 KTEVQAHSPSRK 12 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KTEVQAHS(1)PSRK 78.69 0.002721 72461000 81000 86767 51742 105370 72648 96883 122320 168180 81913 125540 TRUE FALSE FALSE 99018.17055 96913.64588 70883.51896 111126.0963 65414.91004 101955.6441 96185.33274 126933.5913 98352.18775 94245.18839 1.050644306 1.028313992 0.752118174 1.17911692 0.694092835 1.081812725 1.020586137 1.346844263 1.043577815 1 16.52413134 -6.741221267 2.553303468 1.143410493 0.947722626 0.166821765 0.162236235 0.418970409 5.584532358 0.070635117 0.047884989 1.81E-07 6.741221267 -0.195687868 KTEVQAHS(ph)PSRK ddPTM_HeLa_A486_30min_R1 1 KTEVQAHSPSRK 12 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KTEVQAHS(0.997)PS(0.003)RK 134.25 8.47E-06 396740000 397430 234200 208830 140230 224910 492350 403040 322470 335790 446670 TRUE FALSE FALSE 369572.2093 215641.1391 289694.5687 326462.5268 196699.6906 431608.8628 302195.1291 249050.6205 364896.5476 334820.9247 1.10379066 0.644049171 0.865222414 0.975036214 0.587477293 1.289073744 0.902557477 0.743832306 1.089825996 1 18.35303017 -6.246581306 24.99313469 0.982641178 0.833946425 0.162305997 0.189642399 1745.675665 2936445.597 0.061391655 0.061155428 5.67E-07 6.246581306 -0.148694753 KTEVQAHSPS(ph)R ddPTM_HeLa_A486_30min_R1 1 KTEVQAHSPSR 11 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KTEVQAHS(0.325)PS(0.675)R 172.1 1.59E-08 312860000 224300 221000 159980 67395 224100 198530 228840 226260 172580 207490 TRUE FALSE FALSE 208577.7283 203487.1551 221928.5404 156898.966 195991.2884 174037.3871 171581.8116 174745.5372 187539.3734 155533.1535 1.341049954 1.308320127 1.426888965 1.008781488 1.260125472 1.118972921 1.103184805 1.123525971 1.205783906 1 17.24686261 -5.254283641 24.96900632 1.127788868 1.353709732 0.66112546 0.078972096 335.2720619 1169884.802 0.020448382 0.034485685 5.57E-06 5.254283641 0.225920864 KTEVVMNSQQT(ph)PVGT(ph)PK ddPTM_HeLa_A485_30min_R1 1 KTEVVMNSQQTPVGTPK 17 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 2 0 KTEVVMNSQQT(1)PVGT(1)PK 106.43 5.26E-05 0 475050 312920 145550 637810 271150 413350 614540 554650 296200 1209900 TRUE FALSE FALSE 580723.2336 349513.272 199395.0018 672651.9453 244153.3539 434992.3668 483238.5087 418621.2178 355644.6231 908294.1966 0.639355878 0.384801833 0.219526892 0.74056616 0.268804265 0.478911314 0.532028621 0.460887254 0.391552235 1 19.79280014 -10.48238144 3.046712212 1.014448907 0.453965578 0.544938098 0.148727521 64368262.4 76760988.7 7852436.988 0.036662606 3.29E-11 10.48238144 -0.560483329 GSDALS(ph)ET(ph)SS(ph)VSHIEDLEK ddPTM_HeLa_A486_30min_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 3 0 GS(0.001)DALS(0.901)ET(0.653)S(0.584)S(0.855)VS(0.007)HIEDLEK 106.12 0.00012755 399640000 299980 490190 375900 344910 655240 731480 888360 848260 559130 875260 TRUE FALSE FALSE 278952.9511 451345.5592 521458.547 802967.9108 573053.6893 641237.4347 666082.9319 655129.7154 607595.8386 656089.199 0.425175344 0.687933226 0.79479825 1.223870035 0.873438688 0.977363193 1.015232278 0.998537571 0.926087245 1 19.32353245 -4.634655029 1.761324426 0.995341765 0.419822677 0.785621639 0.095580764 0.20051564 1.028398847 0.02638575 0.152679312 2.32E-05 4.634655029 -0.575519088 down KTEVVMNSQQTPVGT(ph)PK ddPTM_HeLa_A485_30min_R1 3 KTEVVMNSQQTPVGTPK 17 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 1 0 KTEVVMNSQQTPVGT(1)PK;KTEVVMNSQQTPVGT(1)PK;KTEVVMNSQQT(0.001)PVGT(0.999)PK ;; 140.17 1.12E-07 846930000 1268870 1082360 533140 2248520 923700 1443990 1885910 1709870 1002450 4500250 TRUE FALSE FALSE 1551125.754 1208932.587 730370.6718 2371350.954 831733.1847 1519595.084 1482969.922 1290521.702 1203632.52 3378420.496 0.459127499 0.357839585 0.216187024 0.701911132 0.246189953 0.449794537 0.438953625 0.381989661 0.356270784 1 21.68791747 -10.89972099 2.4720066 1.338749612 0.400519317 0.668609453 0.126529041 18385739.28 9747254.15 36213172.85 0.031427929 1.26E-11 10.89972099 -0.938230295 KTEVVMNSQQTPVGT(ph)PK ddPTM_HeLa_A486_30min_R1 1 KTEVVMNSQQTPVGTPK 17 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 1 0 KTEVVMNSQQTPVGT(1)PK 161.8 6.96E-12 418260000 388900 318220 193000 185250 366520 503120 488180 438620 441270 1015800 TRUE FALSE FALSE 361640.1183 293003.0883 267734.7687 431271.362 320547.6439 441050.1697 366032.2006 338755.801 479519.6389 761437.0683 0.474944199 0.384802764 0.351617724 0.566391341 0.420977199 0.579233909 0.480712348 0.444890084 0.629756101 1 19.53836528 -14 0.205214271 3.483675496 0.396953862 0.842202794 0.07016391 51.88257226 0.515585061 52.74797815 0.157013081 1.00E-14 14 -3.086721634 KTFSHELSDFGLESTAGEIPVVAIR ddPTM_HeLa_A485_30min_R1 1 KTFSHELSDFGLESTAGEIPVVAIR 25 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 121.35 1.35E-11 7112000 14932 16259 14801 12870 19187 18550 23259 26226 12704 17639 FALSE FALSE TRUE 18253.57189 18160.34862 20276.50582 13573.05551 17276.67491 19521.24932 18289.52464 19794.03238 15253.57627 13241.92192 1.378468473 1.371428462 1.531235869 1.02500646 1.304695422 1.474200606 1.381183543 1.494800566 1.151915588 1 13.69282491 -7.970448887 5.392009451 1.000689311 1.364813549 0.458405615 0.132857511 0.138616851 10.7755145 0.131415192 0.034194781 1.07E-08 7.970448887 0.364124238 KTFTAWCNSHLRK ddPTM_HeLa_A485_30min_R1 1 KTFTAWCNSHLRK 13 2 O43707;F5GXS2;O43707-3;A0A494C1A0;P35609;P35609-2;Q08043;A0A494C166;A0A494C033;A0A494C0Q3;K7EP19;P12814-2;P12814;P12814-3;P12814-4 O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 59.185 0.034466 7497400 11885 21243 12614 8692.8 16060 18211 21398 35150 13155 11676 FALSE FALSE TRUE 14528.77725 23727.18406 17280.44351 9167.665653 14461.01001 19164.4998 16826.14249 26529.40739 15795.08784 8765.388081 1.657516714 2.706917691 1.97144078 1.045893869 1.649785483 2.186383492 1.919611812 3.026609563 1.801983859 1 13.09760225 -6.274240313 23.79892321 2.109374225 1.823273103 0.001394806 0.606063857 1540.983903 2864917.089 0.216369816 0.192214744 5.32E-07 6.274240313 -0.286101123 KTGQIWPNDGEGAFHGDADGSFGT(ph)PPGYGCAADR ddPTM_HeLa_A485_30min_R1 2 KTGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 34 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 KTGQIWPNDGEGAFHGDADGSFGT(1)PPGYGCAADR;KTGQIWPNDGEGAFHGDADGS(0.008)FGT(0.992)PPGYGCAADR ; 174.04 7.70E-15 1440360000 848480 931320 785720 736990 1094710 790270 958880 874470 666290 808520 TRUE FALSE FALSE 1037221.449 1040229.773 1076390.525 777249.8975 985716.8286 831647.3152 754007.4547 660004.8614 800008.2914 606970.8437 1.708848884 1.713805174 1.773380939 1.280539099 1.623993704 1.370160237 1.24224658 1.087374901 1.318034136 1 19.21126769 -5.974338876 0.356664428 1.01233658 1.904002146 0.76150307 0.127960648 0.972530232 0.228578307 0.141258284 0.335711271 1.06E-06 5.974338876 0.891665566 KTGQIWPNDGEGAFHGDADGSFGT(ph)PPGYGCAADR ddPTM_HeLa_A486_30min_R1 1 KTGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 34 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 KTGQIWPNDGEGAFHGDADGS(0.001)FGT(0.999)PPGYGCAADR 124.73 3.29E-06 446440000 768700 751130 559440 187230 898660 548530 684050 581910 395540 408360 TRUE FALSE FALSE 714818.0996 691607.7232 776070.1503 435880.9021 785941.6831 480857.9456 512893.4549 449421.796 429825.7257 306103.998 2.335213209 2.259388076 2.535315302 1.42396344 2.567564253 1.570897305 1.675552943 1.468199693 1.404182005 1 18.22366236 -6.738002219 0.349890983 0.953611443 2.516726015 0.643170521 0.312552882 0.923894225 0.283497088 0.37754238 0.516759872 1.83E-07 6.738002219 1.563114572 KTGQLFHIDFGHILGNFK ddPTM_HeLa_A486_30min_R1 1 KTGQLFHIDFGHILGNFK 18 1 Q68DL0;H0Y871;P42338 Q68DL0 DKFZp779K1237;PIK3CB "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform" 0 0 78.012 0.0035882 2914900 18793 20961 14668 9617.2 25888 21291 23372 20912 12198 24138 FALSE FALSE TRUE 17475.70775 19299.97402 20347.84242 22389.32763 22640.88564 18664.33289 17524.0784 16150.79411 13255.33246 18093.68769 0.965845551 1.066668904 1.124582383 1.23741097 1.251314051 1.031538358 0.968518894 0.892620365 0.7325943 1 14.14319885 -6.838875434 2.028752285 0.8635958 1.130158279 0.551797726 0.098921626 0.252133151 2.112183303 0.055382258 0.03330276 1.45E-07 6.838875434 0.266562479 KTGS(ph)PEIK ddPTM_HeLa_A485_30min_R1 4 KTGSPEIK 8 1 E9PKA2;Q9BZ95-3;Q9BZ95-4;Q9BZ95-2;Q9BZ95-5;Q9BZ95 E9PKA2 WHSC1L1 Histone-lysine N-methyltransferase NSD3 1 0 KT(0.313)GS(0.687)PEIK;KT(0.1)GS(0.9)PEIK;KT(0.001)GS(0.999)PEIK;KT(0.409)GS(0.591)PEIK ;;; 102.97 0.0010144 2572410000 5668800 4277920 2093030 8848800 4334560 5225320 8398300 9341200 4248680 12964000 TRUE FALSE FALSE 6929805.003 4778185.531 2867328.895 9332187.538 3902995.987 5498909.675 6603934.597 7050256.054 5101351.105 9732313.385 0.712040882 0.49096092 0.294619458 0.958886872 0.401034763 0.565015681 0.678557537 0.724417287 0.524166342 1 23.21435135 -14 0.232803613 3.23540769 0.54863783 0.318960855 0.177473766 193.4995138 1.936328175 203.8345763 0.293357773 1.00E-14 14 -2.68676986 KTGS(ph)PEIK ddPTM_HeLa_A486_30min_R1 2 KTGSPEIK 8 1 E9PKA2;Q9BZ95-3;Q9BZ95-4;Q9BZ95-2;Q9BZ95-5;Q9BZ95 E9PKA2 WHSC1L1 Histone-lysine N-methyltransferase NSD3 1 0 KT(0.221)GS(0.779)PEIK;KT(0.038)GS(0.962)PEIK ; 95.018 0.002089 532020000 2570200 1676850 941490 1277110 1400420 2827700 3165100 2316900 1791030 3876800 TRUE FALSE FALSE 2390042.253 1543970.299 1306060.142 2973176.622 1224766.265 2478847.124 2373158.503 1789392.448 1946277.922 2906024.046 0.822444073 0.531299905 0.44943198 1.023108059 0.421457719 0.853002964 0.816634159 0.615752801 0.669739098 1 21.47061521 -14 0.271603459 3.1568204 0.664190299 0.203902816 0.182666378 341.2340642 3.313269682 413.4449899 0.217583095 1.00E-14 14 -2.4926301 KTGS(ph)PGS(ph)PGAGGVQSTAK ddPTM_HeLa_A485_30min_R1 1 KTGSPGSPGAGGVQSTAK 18 1 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 2 0 KT(0.411)GS(0.59)PGS(0.999)PGAGGVQSTAK 89.297 6.79E-05 0 200040 138880 117080 274770 256430 218490 267700 316430 169530 355600 TRUE FALSE FALSE 244538.2079 155120.8079 160392.7641 289779.9893 230898.9288 229929.7986 210503.7081 238825.0464 203553.116 266955.4643 0.916026231 0.581073732 0.60082218 1.085499374 0.864934267 0.86130396 0.788534929 0.894625053 0.762498406 1 18.02623955 -2.455892224 0.040286713 1.40655651 2.85E-14 0.129301492 0.141024647 1219.348207 4.893113281 53.32353395 133.3833463 0.00350032 2.455892224 -1.40655651 KTGS(ph)PGS(ph)PGAGGVQSTAK ddPTM_HeLa_A486_30min_R1 1 KTGSPGSPGAGGVQSTAK 18 1 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 2 0 KT(0.43)GS(0.57)PGS(0.999)PGAGGVQSTAK 103.9 7.68E-05 237710000 245470 212010 111030 105160 233250 266220 296270 291260 175200 288420 TRUE FALSE FALSE 228263.8206 195209.5555 154023.7895 244817.7945 203993.61 233376.4831 222140.1124 224946.4562 190386.4771 216197.7547 1.05581032 0.90292129 0.712420856 1.132378987 0.943551011 1.079458403 1.027485751 1.040466199 0.880612647 1 17.72199201 -5.280914664 24.99961577 1.016784172 0.89163782 0.242817093 0.100673605 1115.698705 1432173.228 0.028063964 0.041688445 5.24E-06 5.280914664 -0.125146351 KTGS(ph)YGALAEITASK ddPTM_HeLa_A485_30min_R1 2 KTGSYGALAEITASK 15 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KTGS(1)YGALAEITASK;KT(0.039)GS(0.961)YGALAEITASK ; 197.72 8.70E-25 4119100000 1665140 1847350 1084190 2088750 2384360 2148760 3265400 3603900 1769170 2934620 TRUE FALSE FALSE 2035544.648 2063381.513 1485276.998 2202853.124 2146964.746 2261265.751 2567720.614 2720037.874 2124226.191 2203073.242 0.923956866 0.936592335 0.674184121 0.999900086 0.974531716 1.026414242 1.16551759 1.234656126 0.964210427 1 21.07108603 -5.952841879 1.480190613 1.103278203 0.860983194 0.444241399 0.10544042 0.344628811 1.555407145 0.042612696 0.049534489 1.11E-06 5.952841879 -0.242295009 KTGS(ph)YGALAEITASK ddPTM_HeLa_A486_30min_R1 2 KTGSYGALAEITASK 15 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KT(0.049)GS(0.951)YGALAEITASK;KT(0.207)GS(0.793)YGALAEITASK ; 143.39 2.46E-07 3581800000 512510 569150 291840 223111 601000 582560 713970 728000 452860 677850 TRUE FALSE FALSE 476585.6956 524048.4812 404848.2637 519413.6834 525616.9759 510689.6702 535327.1544 562250.2921 492114.2694 508111.9479 0.937954121 1.031364217 0.796769817 1.022242609 1.034451124 1.005073139 1.053561438 1.106548064 0.968515445 1 18.95478686 -5.485394605 24.99824018 1.033014768 0.9290534 0.365195366 0.063172715 595.8289529 397358.8822 0.0172945 0.02564411 3.27E-06 5.485394605 -0.103961369 KTHIQDNHDGTYTVAYVPDVTGR ddPTM_HeLa_A486_30min_R1 1 KTHIQDNHDGTYTVAYVPDVTGR 23 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 44.632 0.031466 8784500 12327 16502 20255 5054.4 29587 20011 21006 21297 19008 14969 FALSE FALSE TRUE 11462.94096 15194.32142 28098.27845 11766.89864 25875.92257 17542.24628 15750.07662 16448.13801 20655.62874 11220.66497 1.021591946 1.354137341 2.50415448 1.048681042 2.306095285 1.563387404 1.403666954 1.465879077 1.840856028 1 13.45387056 -10.05385315 4.539396966 0.999971093 1.622686772 0.136262957 0.461586552 67222262 74441916.71 17064.29192 0.107596104 8.83E-11 10.05385315 0.622715679 KTKPYIQVDIGGGQTK ddPTM_HeLa_A486_30min_R1 2 KTKPYIQVDIGGGQTK 16 2 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 130.56 9.96E-06 31797000 68746 52599 36329 27843 64621 67809 71115 69934 51924 80310 FALSE FALSE TRUE 63927.2604 48430.86368 50396.56172 64819.91111 56515.63161 59443.41501 53321.27482 54011.55485 56424.81413 60199.85327 1.061917213 0.804501358 0.837154229 1.076745334 0.938800156 0.98743455 0.885737621 0.897204095 0.937291556 1 15.87747235 KTMAS(ph)RRFQCAS(ph)VLLT(ph)VLEDEK ddPTM_HeLa_A486_30min_R1 1 KTMASRRFQCASVLLTVLEDEK 22 3 A0A1W2PR53;H7BXS7;Q0VDD8-4 A0A1W2PR53 DNAH14 3 0 KT(0.557)MAS(0.668)RRFQCAS(0.907)VLLT(0.868)VLEDEK 51.539 0.017403 352960000 324490 254840 59604 352630 153450 401000 583470 432170 168810 890700 TRUE FALSE FALSE 301744.9267 234645.5503 82684.26505 820940.4609 134202.8701 351528.6971 437479.6347 333774.3252 183442.5867 667662.9225 0.451942015 0.351443135 0.123841331 1.229573237 0.201003928 0.526506243 0.655240272 0.499914424 0.274753293 1 19.3487604 -10.5675698 2.839775588 1.030365353 0.486181652 0.220757188 0.293201663 73207580.71 75367313.72 16829480.67 0.073875141 2.71E-11 10.5675698 -0.544183702 KTPEKLDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_HeLa_A485_30min_R1 3 KTPEKLDNTPASPPRSPAEPNDIPIAK 27 3 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 2 0 KT(0.003)PEKLDNT(0.121)PAS(0.877)PPRS(0.998)PAEPNDIPIAK;KT(0.005)PEKLDNT(0.121)PAS(0.884)PPRS(0.991)PAEPNDIPIAK;KTPEKLDNT(0.001)PAS(0.999)PPRS(1)PAEPNDIPIAK ;; 184.84 1.84E-20 2659380000 1527780 1161120 672220 1791320 1526230 1696080 2684390 2778450 1162200 2515970 TRUE FALSE FALSE 1867629.39 1296902.884 920902.1514 1889175.276 1374273.182 1784884.126 2110848.147 2097030.781 1395442.88 1888784.982 0.988799365 0.686633416 0.487563254 1.000206637 0.727596415 0.944990639 1.11756932 1.110253841 0.738804519 1 20.84902704 -6.379444476 4.426734641 1.00434806 0.769605669 0.267925564 0.168737392 0.303776687 9.655387397 0.061948055 0.054085546 4.17E-07 6.379444476 -0.234742392 KTPEKLDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_HeLa_A486_30min_R1 2 KTPEKLDNTPASPPRSPAEPNDIPIAK 27 3 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 2 0 KTPEKLDNT(0.004)PAS(0.996)PPRS(1)PAEPNDIPIAK;KTPEKLDNT(0.024)PAS(0.979)PPRS(0.998)PAEPNDIPIAK ; 150.79 2.13E-09 757230000 1296160 1016800 378220 548170 946450 1177200 1533100 1507830 740460 1765410 TRUE FALSE FALSE 1205305.877 936225.0649 524676.9131 1276167.463 827737.4157 1031969.033 1149502.165 1164530.025 804643.669 1323339.845 0.910806005 0.707471379 0.396479344 0.964353539 0.625491191 0.779821628 0.86863716 0.87999317 0.608040083 1 20.33575218 -6.516916562 21.62009946 0.82846176 0.714371052 0.094286672 0.170985655 120.9996975 438789.9364 0.062687314 0.05043662 3.04E-07 6.516916562 -0.114090708 KTPESFLGPNAALVDLDSLVSRPGPT(ph)PPGAK ddPTM_HeLa_A485_30min_R1 2 KTPESFLGPNAALVDLDSLVSRPGPTPPGAK 31 2 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 KTPESFLGPNAALVDLDS(0.069)LVS(0.199)RPGPT(0.731)PPGAK;KTPESFLGPNAALVDLDS(0.035)LVS(0.167)RPGPT(0.798)PPGAK ; 143.36 1.99E-09 520270000 191287 167061 124819 243127 247415 230714 310780 349300 171237 345970 TRUE FALSE FALSE 233838.1332 186597.3307 170994.7423 256408.4124 222781.4939 242793.8283 244379.3142 263633.6273 205602.6952 259726.0461 0.900326081 0.718439038 0.658365785 0.987226411 0.85775569 0.934807394 0.940911849 1.015045011 0.791613696 1 17.98663117 -5.26948152 24.95391602 0.930441672 0.754983173 0.468058214 0.084676269 484.8940225 1504574.688 0.023149536 0.03503175 5.38E-06 5.26948152 -0.175458499 KTPESFLGPNAALVDLDSLVSRPGPT(ph)PPGAK ddPTM_HeLa_A486_30min_R1 1 KTPESFLGPNAALVDLDSLVSRPGPTPPGAK 31 2 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 KTPESFLGPNAALVDLDSLVSRPGPT(1)PPGAK 205.66 3.53E-29 318920000 72654 81584 42927 39275 95565 80510 111980 111600 67893 116540 TRUE FALSE FALSE 67561.32979 75118.98672 59549.48402 91434.18485 83578.34659 70577.49477 83961.4196 86191.11621 73778.0199 87357.62545 0.773387892 0.859901884 0.68167471 1.046665181 0.956737848 0.807914528 0.96112296 0.986646738 0.844551572 1 16.41464602 -5.259372465 24.99969048 0.938472439 0.780479538 0.503593193 0.077875449 164.5148912 1989824.408 0.021362582 0.034786443 5.50E-06 5.259372465 -0.157992901 KTPLGEEMT(ph)PPPKPPR ddPTM_HeLa_A485_30min_R1 1 KTPLGEEMTPPPKPPR 16 2 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 KT(0.003)PLGEEMT(0.997)PPPKPPR 65.951 0.013193 111270000 276770 252540 181630 317900 357510 343720 449530 476600 255650 481550 TRUE FALSE FALSE 338336.5317 282072.3562 248822.4953 335266.072 321915.0491 361716.6477 353484.2432 359713.1027 306956.61 361508.4473 0.935902146 0.78026491 0.688289574 0.92740868 0.890477253 1.000575921 0.97780355 0.995033741 0.849099412 1 18.46366983 -5.429280001 7.401921718 0.951547114 0.799416405 0.464747828 0.072749586 0.240548292 16.70446765 0.020770167 0.030833413 3.72E-06 5.429280001 -0.152130709 KTPLGEEMT(ph)PPPKPPR ddPTM_HeLa_A486_30min_R1 1 KTPLGEEMTPPPKPPR 16 2 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 KT(0.02)PLGEEMT(0.98)PPPKPPR 55.763 0.036265 97207000 299680 286340 154240 118260 296640 297820 320360 326430 210440 356460 TRUE FALSE FALSE 278673.9795 263649.3756 213965.8587 275315.2565 259432.6451 261077.9964 240202.5396 252109.0149 228681.1086 267200.0958 1.042941166 0.986711381 0.800770142 1.030371099 0.97093021 0.977087959 0.898961278 0.943521424 0.855842165 1 18.027561 -6.754988233 24.97809207 0.919874668 0.964328125 0.081217015 0.070368375 418.5265467 1620492.133 0.027465797 0.020751466 1.76E-07 6.754988233 0.044453458 KTPLSTGGTLAFVS(ph)PSLAVHK ddPTM_HeLa_A486_30min_R1 1 KTPLSTGGTLAFVSPSLAVHK 21 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 KTPLSTGGTLAFVS(0.999)PS(0.001)LAVHK 166.49 1.13E-13 135620000 278470 245160 132120 75829 289820 246730 285220 295680 178110 233850 TRUE FALSE FALSE 258950.691 225732.6287 183280.4023 176533.7442 253468.0731 216290.9612 213854.9393 228360.1186 193548.7182 175292.4379 1.477249641 1.287748813 1.045569361 1.007081345 1.445972663 1.233886434 1.219989532 1.302737993 1.104147564 1 17.41940423 -7.96719246 4.480840286 1.000761685 1.24277007 0.25818737 0.140439647 0.254386116 12.09776366 0.14138359 0.03701148 1.08E-08 7.96719246 0.242008385 KTPS(ph)RPGSR ddPTM_HeLa_A486_30min_R1 1 KTPSRPGSR 9 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 1 0 KT(0.119)PS(0.881)RPGSR 53.967 0.019657 35898000 22119 15089 13341 9167.7 15322 24568 20865 16767 20406 31032 TRUE FALSE FALSE 20568.57232 13893.29269 18506.99248 21342.86891 13400.17189 21537.04995 15644.35631 12949.52012 22174.80851 23261.38522 0.884236778 0.597268501 0.795610077 0.917523557 0.576069386 0.925871342 0.672546203 0.556696001 0.953288392 1 14.50564939 -7.924237075 8.736536123 0.999735092 0.742285791 0.339339288 0.132438883 0.266454353 26.36267483 0.122535715 0.031674891 1.19E-08 7.924237075 -0.257449301 KTPSKPPAQLS(ph)PSVPK ddPTM_HeLa_A485_30min_R1 3 KTPSKPPAQLSPSVPK 16 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 KTPSKPPAQLS(0.682)PS(0.318)VPK;KTPSKPPAQLS(0.898)PS(0.102)VPK;KTPSKPPAQLS(0.5)PS(0.5)VPK ;; 110.64 8.52E-05 7526200000 6044140 4248650 2743610 7346800 5912270 5821180 9121310 7990570 4505930 9284880 TRUE FALSE FALSE 7388638.091 4745492.659 3758585.51 7748137.081 5323623.64 6125967.984 7172467.604 6030870.179 5410228.82 6970330.292 1.060012622 0.68081317 0.539226314 1.111588226 0.763754861 0.878863372 1.028999675 0.865220144 0.776179692 1 22.73279559 -5.26367324 24.99880011 0.908777323 0.752096961 0.170580409 0.158278348 356.57951 3990441.683 0.043821445 0.068727045 5.45E-06 5.26367324 -0.156680363 KTPSKPPAQLS(ph)PSVPK ddPTM_HeLa_A486_30min_R1 2 KTPSKPPAQLSPSVPK 16 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 KTPSKPPAQLS(0.854)PS(0.146)VPK;KTPSKPPAQLS(0.5)PS(0.5)VPK ; 135.73 3.63E-06 8608000000 6906300 6118600 2461100 2804600 5259300 7139600 8405100 8112100 4490800 8692500 TRUE FALSE FALSE 6422204.034 5633739.852 3414103.831 6529250.537 4599629.553 6258788.742 6302055.08 6265151.916 4880066.16 6515841.421 0.985629272 0.864622002 0.523969755 1.002057925 0.705914901 0.96054958 0.967189757 0.96152615 0.748954102 1 22.63552006 -6.288720415 24.67456542 0.927710926 0.813179489 0.131315495 0.142887521 1349.311268 1220391.238 0.049780683 0.043913747 5.14E-07 6.288720415 -0.114531436 KTPSRPGS(ph)R ddPTM_HeLa_A486_30min_R1 1 KTPSRPGSR 9 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 1 0 KT(0.005)PS(0.019)RPGS(0.976)R 54.259 0.030737 132490000 279760 145110 200290 103310 185760 357910 258380 211580 280210 319810 TRUE FALSE FALSE 260150.2687 133610.9551 277847.652 240510.901 162460.2487 313754.7032 193730.5911 163407.8528 304498.8284 239727.4944 1.085191623 0.557345145 1.159014541 1.003267905 0.677687176 1.308797324 0.808128378 0.681640015 1.27018734 1 17.87103586 -5.716349779 0.138352717 1.045774245 0.816212378 0.01281577 0.247151926 109.2483056 4.767123692 2.113404943 5.741790819 1.92E-06 5.716349779 -0.229561868 KTQMAEVLPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 KTQMAEVLPSPR 12 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 KTQMAEVLPS(1)PR 71.085 0.0062319 0 158000 210040 164070 166590 265340 196670 236740 306990 194740 228470 TRUE FALSE FALSE 193146.5549 234602.3509 224766.3205 175690.3899 238921.8179 206967.3371 186158.565 231700.2212 233822.5317 171516.6337 1.126109758 1.367811074 1.310463689 1.024334411 1.392995028 1.206689594 1.085367413 1.350890676 1.363264464 1 17.38798897 -9.946998488 4.290767194 0.999992751 1.247715594 0.26095879 0.124976077 10545502.41 3492418.91 719.0874247 0.02976225 1.13E-10 9.946998488 0.247722843 KTQQLHPVLQKPSVFGNDS(ph)DDDDETSVSESLQR ddPTM_HeLa_A485_30min_R1 2 KTQQLHPVLQKPSVFGNDSDDDDETSVSESLQR 33 2 Q9H0G5 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 1 0 KTQQLHPVLQKPSVFGNDS(0.999)DDDDETSVS(0.001)ESLQR;KTQQLHPVLQKPSVFGNDS(1)DDDDETSVSESLQR ; 255 5.31E-64 4505900000 395710 375490 235990 447670 592340 534840 822260 976890 363160 577250 TRUE FALSE FALSE 483734.3243 419400.2892 323292.5214 472125.0785 533364.5498 562843.3954 646577.4338 737306.1958 436042.8809 433352.1985 1.116261383 0.967804688 0.746027186 1.089471982 1.230787686 1.29881283 1.492036814 1.701401766 1.006208997 1 18.7251805 -5.7803644 2.198800028 1.351123511 0.94410351 0.330465714 0.215225988 0.306316718 3.041679861 0.072405281 0.091747733 1.66E-06 5.7803644 -0.407020001 KTQQLHPVLQKPSVFGNDS(ph)DDDDETSVSESLQR ddPTM_HeLa_A486_30min_R1 3 KTQQLHPVLQKPSVFGNDSDDDDETSVSESLQR 33 2 Q9H0G5 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 1 0 KTQQLHPVLQKPS(0.019)VFGNDS(0.969)DDDDET(0.01)S(0.002)VSESLQR;KTQQLHPVLQKPSVFGNDS(0.999)DDDDETSVSESLQR;KTQQLHPVLQKPSVFGNDS(0.973)DDDDET(0.022)S(0.005)VSESLQR ;; 116.39 1.78E-05 10461100000 2262440 2018190 1084740 764540 2159660 2136010 2978800 2698150 1332400 2659940 TRUE FALSE FALSE 2103854.639 1858261.274 1504780.378 1779887.758 1888775.305 1872490.804 2233472.733 2083840.145 1447893.505 1993873.711 1.055159426 0.931985443 0.75470195 0.892678282 0.947289337 0.939122069 1.120167602 1.045121431 0.72617112 1 20.9271426 -6.073648708 2.613699409 0.978691007 0.900795304 0.044001076 0.116829229 0.824814302 11.09915177 0.043144072 0.044887182 8.44E-07 6.073648708 -0.077895703 KTS(ph)PASLDFPESQK ddPTM_HeLa_A485_30min_R1 1 KTSPASLDFPESQK 14 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KT(0.477)S(0.52)PAS(0.002)LDFPESQK 145.21 5.11E-08 4129600000 1686300 1291300 918010 2363100 1853600 1627200 2678400 2660700 1330000 2900000 TRUE FALSE FALSE 2061411.617 1442306.302 1257620.101 2492190.169 1669049.076 1712397.676 2106137.959 2008159.153 1596918.801 2177083.371 0.946868478 0.662494749 0.577662811 1.144738049 0.766644538 0.786555857 0.967412635 0.922408016 0.733512929 1 21.05396523 -13.99991626 0.044080067 1.700962037 0.449051711 0.08398605 0.157743387 1718.698431 5.624890816 152.4861813 40.54681107 1.00E-14 13.99991626 -1.251910326 KTS(ph)PASLDFPESQK ddPTM_HeLa_A486_30min_R1 2 KTSPASLDFPESQK 14 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KT(0.175)S(0.825)PASLDFPESQK;KT(0.093)S(0.907)PASLDFPESQK ; 232.01 8.94E-29 8712000000 6704400 6276400 2806700 3048400 5443800 7370800 9400700 8708500 5012600 10079400 TRUE FALSE FALSE 6234456.182 5779035.206 3893529.406 7096829.258 4760987.843 6461465.637 7048545.43 6725764.655 5447096.204 7555452.634 0.825159853 0.764882726 0.515327088 0.93929902 0.630139328 0.855205631 0.932908427 0.89018686 0.720949024 1 22.84908676 -6.439352631 8.462226756 0.879291163 0.736016005 0.257880637 0.123555717 0.505196452 47.23199665 0.042343315 0.037261722 3.64E-07 6.439352631 -0.143275158 KTSAVSS(ph)PLLDQQR ddPTM_HeLa_A485_30min_R1 2 KTSAVSSPLLDQQR 14 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KTSAVS(0.284)S(0.716)PLLDQQR;KTSAVS(0.182)S(0.818)PLLDQQR ; 125.28 1.70E-05 1532510000 1338170 1827900 1449040 1273750 2121000 1876120 2178000 2794800 1586660 1656570 TRUE FALSE FALSE 1635841.3 2041657.004 1985100.196 1343331.737 1909825.793 1974350.742 1712652.507 2109370.918 1905088.108 1243617.586 1.315389327 1.641708052 1.596230399 1.080180718 1.535701822 1.587586702 1.377153658 1.696157196 1.531892223 1 20.24611149 -10.09798582 5.073032864 0.999987037 1.488256437 0.412285417 0.173551954 2.55E-05 4.53E-06 0.168398613 0.04084158 7.98E-11 10.09798582 0.488269399 KTSAVSS(ph)PLLDQQR ddPTM_HeLa_A486_30min_R1 2 KTSAVSSPLLDQQR 14 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KTSAVS(0.108)S(0.892)PLLDQQR;KTSAVS(0.049)S(0.951)PLLDQQR ; 149.72 3.54E-08 1372500000 1611930 1570610 1238400 531730 1838030 1416050 1699320 1816820 1187720 1570720 TRUE FALSE FALSE 1498942.031 1446149.144 1717941.646 1237894.312 1607487.138 1241352.148 1274132.162 1403169.747 1290672.526 1177401.488 1.273093372 1.228254897 1.459095867 1.051378246 1.365283766 1.054315083 1.082156066 1.191751294 1.096204259 1 20.16717493 -6.27223839 24.98868859 1.096699211 1.270558193 0.439408388 0.107120981 744.6076668 1723001.231 0.036138751 0.032187182 5.34E-07 6.27223839 0.173858982 KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR ddPTM_HeLa_A485_30min_R1 5 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KT(0.061)S(0.04)FDQDS(0.9)DVDIFPSDFPTEPPSLPR;KT(0.021)S(0.015)FDQDS(0.963)DVDIFPSDFPTEPPSLPR;KT(0.027)S(0.027)FDQDS(0.946)DVDIFPSDFPTEPPSLPR;KT(0.034)S(0.134)FDQDS(0.832)DVDIFPSDFPTEPPSLPR;KT(0.04)S(0.04)FDQDS(0.92)DVDIFPSDFPTEPPSLPR ;;;; 226.64 1.32E-38 10452520000 547704 579439 431249 782770 796010 679048 1013680 1108363 593591 1133955 TRUE FALSE FALSE 669538.8652 647199.3506 590785.9509 825530.743 716756.4494 714601.9033 797098.987 836535.2364 712719.269 851280.8874 0.786507574 0.760265337 0.693996494 0.969751295 0.841974089 0.839443143 0.9363525 0.982678278 0.837231611 1 19.69927571 -4.913103151 0.278096874 0.98331367 0.613415307 0.483142991 0.07061023 5.211820066 0.448425568 0.095230165 0.643917096 1.22E-05 4.913103151 -0.369898363 KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR ddPTM_HeLa_A486_30min_R1 7 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 KT(0.057)S(0.035)FDQDS(0.907)DVDIFPSDFPTEPPSLPR;KT(0.011)S(0.008)FDQDS(0.981)DVDIFPSDFPTEPPSLPR;KT(0.052)S(0.052)FDQDS(0.896)DVDIFPSDFPTEPPSLPR;KT(0.026)S(0.026)FDQDS(0.948)DVDIFPSDFPTEPPSLPR;KT(0.061)S(0.061)FDQDS(0.878)DVDIFPSDFPTEPPSLPR;KT(0.014)S(0.065)FDQDS(0.921)DVDIFPSDFPTEPPSLPR;KT(0.005)S(0.005)FDQDS(0.99)DVDIFPSDFPTEPPSLPR ;;;;;; 203.59 1.42E-28 9215595000 1183559 1276810 762240 560181.1 1063128 1190274 1601950 1430428 1093801 1584513 TRUE FALSE FALSE 1100597.626 1175630.926 1057399.741 1304129.911 929780.573 1043430.096 1201125.166 1104750.77 1188612.551 1187740.631 0.926631284 0.989804419 0.890261488 1.097992168 0.782814487 0.878499959 1.011268904 0.93012796 1.0007341 1 20.1797884 -7.644140068 1.379710902 1.001889543 0.935564197 0.080509903 0.080158699 1.198998749 4.280415989 0.074250957 0.023830844 2.27E-08 7.644140068 -0.066325346 KTSQIGES(ph)FEEILEETVISTK ddPTM_HeLa_A485_30min_R1 1 KTSQIGESFEEILEETVISTK 21 1 Q16352 Q16352 INA Alpha-internexin 1 0 KT(0.208)S(0.208)QIGES(0.583)FEEILEETVISTK 58.914 0.01304 8492300 9617.6 8073.4 6363.7 9791.6 9281.5 11272 15138 16280 9305.3 18452 TRUE FALSE FALSE 11757.00194 9017.513901 8717.897446 10326.49031 8357.401271 11862.18449 11903.64263 12287.30447 11172.78836 13852.25598 0.848742757 0.650978 0.629348566 0.745473541 0.603324201 0.856335929 0.859328809 0.887025513 0.806568141 1 13.75783333 -6.363651704 6.530492627 0.875460559 0.692551652 0.58433468 0.078538567 0.180264668 9.865723056 0.02680237 0.023571366 4.33E-07 6.363651704 -0.182908907 KTSS(ph)DDES(ph)EEDEDDLLQR ddPTM_HeLa_A485_30min_R1 4 KTSSDDESEEDEDDLLQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 KT(0.252)S(0.326)S(0.422)DDES(1)EEDEDDLLQR;KTS(0.036)S(0.963)DDES(1)EEDEDDLLQR;KT(0.284)S(0.331)S(0.386)DDES(1)EEDEDDLLQR;KT(0.121)S(0.404)S(0.475)DDES(1)EEDEDDLLQR ;;; 165.96 1.83E-12 3735020000 3893360 3662960 2732770 6360050 5143090 3987690 6548710 6478100 3417950 8899550 TRUE FALSE FALSE 4759424.5 4091311.308 3743735.343 6707483.427 4631025.901 4196479.282 5149524.61 4889335.818 4103901.214 6681055.969 0.712376086 0.612374949 0.560350843 1.003955581 0.693157777 0.628116169 0.770765076 0.731820814 0.614259367 1 22.67164471 -10.77725193 2.857381447 1.068013786 0.705355035 0.36455524 0.117590409 69993157.15 59275800.02 33398414.98 0.031595318 1.67E-11 10.77725193 -0.362658751 KTSS(ph)DDES(ph)EEDEDDLLQR ddPTM_HeLa_A486_30min_R1 5 KTSSDDESEEDEDDLLQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 KT(0.256)S(0.198)S(0.546)DDES(1)EEDEDDLLQR;KT(0.259)S(0.327)S(0.414)DDES(1)EEDEDDLLQR;KT(0.037)S(0.17)S(0.792)DDES(1)EEDEDDLLQR;KT(0.02)S(0.13)S(0.849)DDES(1)EEDEDDLLQR;KT(0.058)S(0.421)S(0.521)DDES(1)EEDEDDLLQR ;;;; 202.33 1.37E-25 4851000000 2683770 2480420 1288211 1931850 2295910 2899210 4097030 3574080 2038580 4747960 TRUE FALSE FALSE 2495651.582 2283862.486 1787040.799 4497444.43 2007935.559 2541534.947 3071909.76 2760340.006 2215285.756 3559039.912 0.701214834 0.641707467 0.502113166 1.263667883 0.564178995 0.714106897 0.863128775 0.775585572 0.622439144 1 21.76305668 -11.62149243 2.134047427 6.443643397 0.743203442 0.131699475 0.200993363 9502304.671 426015.5836 251541995.6 0.049221048 2.39E-12 11.62149243 -5.700439955 KTSTS(ph)PPPEK ddPTM_HeLa_A485_30min_R1 4 KTSTSPPPEK 10 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KT(0.181)S(0.036)T(0.164)S(0.618)PPPEK;KT(0.009)S(0.042)T(0.394)S(0.555)PPPEK;KT(0.043)S(0.268)T(0.144)S(0.545)PPPEK;KT(0.048)S(0.038)T(0.056)S(0.858)PPPEK ;;; 68.168 0.0089043 4144160000 3595610 3063410 1683750 3946090 2311280 3036130 3966060 3639640 2362320 4674820 TRUE FALSE FALSE 4395441.04 3421649.151 2306639.192 4161654.905 2081160.848 3195097.072 3118678.881 2747012.583 2836415.956 3509473.408 1.252450305 0.97497509 0.657260769 1.185834574 0.593012286 0.910420653 0.888645822 0.782742099 0.808216968 1 21.74282314 -4.353606099 3.480925761 0.849753951 1.267733116 0.363917218 0.158876657 0.249407992 4.93528942 0.037448084 0.230567695 4.43E-05 4.353606099 0.417979165 KTSTS(ph)PPPEK ddPTM_HeLa_A486_30min_R1 5 KTSTSPPPEK 10 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KT(0.045)S(0.053)T(0.374)S(0.528)PPPEK;KT(0.014)S(0.039)T(0.141)S(0.807)PPPEK;KT(0.01)S(0.009)T(0.114)S(0.867)PPPEK;KT(0.029)S(0.029)T(0.149)S(0.793)PPPEK;KT(0.144)S(0.103)T(0.113)S(0.641)PPPEK ;;;; 94.717 0.0014803 5006610000 4893180 3729160 1641310 1478830 2523430 4174110 4316520 3497040 3192660 6151960 TRUE FALSE FALSE 4550193.35 3433647.78 2276869.188 3442790.976 2206917.879 3659150.747 3236481.041 2700840.332 3469402.339 4611469.173 0.986712299 0.744588688 0.49374052 0.746571395 0.478571535 0.793489148 0.701832956 0.58567893 0.752342086 1 22.13679502 -8.026227565 21.33603864 1.00000001 0.684074084 0.298344868 0.141274422 439.9128002 357869.116 0.134740491 0.034789838 9.41E-09 8.026227565 -0.315925926 KTSYAQHQQVR ddPTM_HeLa_A485_30min_R1 1 KTSYAQHQQVR 11 1 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09;D6RAS7;H0Y8L7;E9PFI5 D6R9B6 RPS3A 40S ribosomal protein S3a 0 0 100.93 0.0016996 6787700 11341 17398 19742 7741.7 22329 18151 16983 23233 16394 15620 FALSE FALSE TRUE 13863.76632 19432.54476 27045.38733 8164.609468 20105.84636 19101.35829 13354.44331 17535.07032 19684.12543 11726.22146 1.182287608 1.657187255 2.306402571 0.696269424 1.714605717 1.628944017 1.13885307 1.495372604 1.678641793 1 13.51745059 -11.13343913 2.229693613 0.000221128 1.503921385 0.120047271 0.405846059 9450238.416 2295135.111 47810483.7 0.103046794 7.35E-12 11.13343913 1.503700256 KTT(ph)PILR ddPTM_HeLa_A485_30min_R1 2 KTTPILR 7 1 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 KT(0.1)T(0.9)PILR;KT(0.297)T(0.703)PILR ; 110.31 0.0025874 569220000 274840 273590 246410 316080 294660 275330 311970 311250 247220 392410 TRUE FALSE FALSE 335977.2098 305583.9706 337567.313 333346.65 265322.6158 289745.8531 245315.0609 234915.4495 296834.7864 294589.4088 1.140493174 1.037321647 1.145890867 1.131563594 0.900652257 0.983558283 0.832735508 0.797433453 1.007622058 1 18.16834604 -5.76361064 24.99792019 0.908986572 1.110644331 0.641074116 0.070603288 35.36070352 407112.3166 0.021672179 0.025788872 1.72E-06 5.76361064 0.201657759 KTT(ph)PILR ddPTM_HeLa_A486_30min_R1 3 KTTPILR 7 1 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 KT(0.348)T(0.652)PILR;KT(0.091)T(0.909)PILR;KT(0.008)T(0.992)PILR ;; 135.43 0.0013808 2123970000 1624050 1744350 1002020 577240 1448010 1671380 1847220 1726380 1375970 1973680 TRUE FALSE FALSE 1510212.482 1606121.353 1390028.979 1343843.892 1266387.084 1465182.129 1385026.018 1333320.961 1495240.187 1479457.681 1.020787888 1.085614934 0.939553051 0.908335472 0.855980607 0.990350821 0.936171433 0.901222777 1.010667764 1 20.496637 -4.772521026 24.65410131 0.936389509 1.053201402 0.453893558 0.048037515 127.6815367 284063.9108 0.012326859 0.026062592 1.69E-05 4.772521026 0.116811893 KTTAS(ph)PSVR ddPTM_HeLa_A485_30min_R1 1 KTTASPSVR 9 1 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 KT(0.057)T(0.035)AS(0.905)PS(0.003)VR 72.29 0.0078631 169470000 173400 209350 171340 196550 247640 183960 263570 247450 225810 329880 TRUE FALSE FALSE 211972.2318 233831.6614 234725.7961 207287.0288 222984.0921 193591.8611 207256.1163 186762.4995 271127.9957 247646.987 0.855945127 0.944213633 0.947824154 0.83702625 0.900411084 0.781725082 0.836901425 0.754148079 1.094816452 1 17.91792554 -7.772852383 24.99997552 1.047408312 0.8607562 0.594539673 0.062753595 179.3816015 392919.2731 0.06163797 0.016479713 1.69E-08 7.772852383 -0.186652111 KTTAS(ph)PSVR ddPTM_HeLa_A486_30min_R1 1 KTTASPSVR 9 1 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 KT(0.001)T(0.028)AS(0.971)PS(0.001)VR 95.477 0.0015673 175450000 314650 286030 195800 116800 320110 330940 319840 351150 260290 338970 TRUE FALSE FALSE 292594.6599 263363.9411 271619.0037 271916.3027 279958.8189 290111.9876 239812.6491 271200.8106 282852.1468 254089.7057 1.151540788 1.036499847 1.06898862 1.070158675 1.101810946 1.141769938 0.94381096 1.067342771 1.113197979 1 17.9549784 -6.72571693 24.99976466 1.036699275 1.090443799 0.261677168 0.052004218 293.285775 205250.7583 0.020046578 0.015531147 1.88E-07 6.72571693 0.053744525 KTTHFVEGGDAGNREDQINR ddPTM_HeLa_A485_30min_R1 2 KTTHFVEGGDAGNREDQINR 20 2 A8MUD9;P18124 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 120.23 5.12E-06 209181000 133146 208050 176142 122559 223461 212794 247843 316744 164625 182701 FALSE FALSE TRUE 162763.8684 232379.6377 241304.2557 129254.0878 201212.4382 223935.5648 194889.3184 239062.0374 197663.7275 137157.0031 1.186697469 1.6942601 1.759328728 0.94238052 1.467022709 1.632695085 1.420921382 1.742980905 1.441149362 1 17.06546876 -8.043076933 22.44936846 0.999999994 1.48873746 0.256175874 0.244054775 3662.997005 1908954.485 0.2358671 0.060900623 9.06E-09 8.043076933 0.488737466 KTTPS(ph)PGR ddPTM_HeLa_A485_30min_R1 2 KTTPSPGR 8 1 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 1 0 KT(0.015)T(0.222)PS(0.763)PGR;KT(0.031)T(0.068)PS(0.901)PGR ; 63.864 0.015359 91940000 291410 350570 301900 364050 242970 328520 340800 401100 306610 443100 TRUE FALSE FALSE 356233.1491 391566.1119 413585.3731 383937.1297 218779.0537 345720.7992 267985.2959 302729.5961 368143.8146 332643.3247 1.070916272 1.177135036 1.243329844 1.154200614 0.657698614 1.039313804 0.805623549 0.910072662 1.106722388 1 18.34361656 -5.569307688 24.99995908 0.914781583 1.170734414 0.477469899 0.12365911 98.18999982 52870.49138 0.035251972 0.045510116 2.70E-06 5.569307688 0.255952831 KTTPS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 KTTPSPGR 8 1 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 1 0 KT(0.004)T(0.022)PS(0.974)PGR 67.726 0.010882 36769000 129330 52076 72421 43641 66087 151580 96006 89822 121440 135800 TRUE FALSE FALSE 120264.6349 47949.3081 100464.3507 101598.4535 57797.75222 132879.6008 71984.28335 69371.4914 131966.517 101794.7961 1.181441876 0.471038893 0.986930124 0.998071192 0.567786905 1.305367326 0.707150917 0.681483672 1.296397479 1 16.63530428 -7.764814617 24.99999592 1.14819872 0.85780527 0.162464747 0.259386018 155.96584 1155130.918 0.205514226 0.061509824 1.72E-08 7.764814617 -0.290393451 KTVEDEDQDS(ph)EEEKDNDSYIK ddPTM_HeLa_A485_30min_R1 4 KTVEDEDQDSEEEKDNDSYIK 21 2 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 KTVEDEDQDS(1)EEEKDNDSYIK;KTVEDEDQDS(1)EEEKDNDSYIK;KTVEDEDQDS(1)EEEKDNDSYIK;KTVEDEDQDS(1)EEEKDNDSYIK ;;; 251.19 1.07E-47 3379270000 1651780 793260 480134 3721500 1425800 1450160 2725340 2193120 947670 4967130 TRUE FALSE FALSE 2019212.762 886024.8566 657755.5466 3924796.122 1283842.346 1526088.135 2143048.845 1655253.881 1137858.676 3728915.904 0.541501287 0.237609235 0.176393237 1.052530071 0.344293725 0.409257858 0.574710962 0.443896812 0.305144633 1 21.83032483 -10.48038977 3.998959735 1.004548435 0.455726628 0.331690347 0.232525864 652144820.3 148672.297 27315583.07 0.056221477 3.31E-11 10.48038977 -0.548821806 KTVEDEDQDS(ph)EEEKDNDSYIK ddPTM_HeLa_A486_30min_R1 2 KTVEDEDQDSEEEKDNDSYIK 21 2 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 KTVEDEDQDS(1)EEEKDNDSYIK;KTVEDEDQDS(1)EEEKDNDSYIK ; 140.55 4.18E-08 2317700000 681270 562940 163700 506040 426650 899580 1180660 1037550 443400 1621180 TRUE FALSE FALSE 633516.4911 518330.5842 227089.024 1178086.694 373135.5786 788598.9659 885246.3803 801322.5146 481834.269 1215225.976 0.521315791 0.426530205 0.186869791 0.969438374 0.307050364 0.648931953 0.728462358 0.659402062 0.396497671 1 20.21279318 -14 0.133543591 2.475939862 0.36930331 0.297580718 0.213788041 180.0400917 1.499453098 71.621379 1.479580862 1.00E-14 14 -2.106636552 KTVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_HeLa_A485_30min_R1 2 KTVFPGAVPVLPASPPPKDSLR 22 2 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 KTVFPGAVPVLPAS(1)PPPKDSLR;KTVFPGAVPVLPAS(0.998)PPPKDS(0.002)LR ; 114.06 4.43E-05 413870000 384300 388000 313700 436600 477080 529780 681810 818910 395880 612070 TRUE FALSE FALSE 469786.2092 433373.2248 429750.6841 460450.3525 429580.2401 557518.4616 536135.7236 618071.0385 475329.4848 459492.2133 1.022402982 0.943156842 0.935273051 1.002085213 0.934902111 1.213336038 1.166800455 1.345117546 1.034466898 1 18.80968089 -6.26019144 24.97255119 1.174442555 0.966331978 0.484758848 0.093614255 83.48558433 1670640.11 0.030114624 0.028546653 5.49E-07 6.26019144 -0.208110577 KTVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_HeLa_A486_30min_R1 1 KTVFPGAVPVLPASPPPKDSLR 22 2 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 KTVFPGAVPVLPAS(1)PPPKDSLR 94.006 0.00054979 269490000 351500 348740 214210 148110 427230 369130 428830 419160 290100 472070 TRUE FALSE FALSE 326861.6651 321104.5723 297157.8487 344807.5651 373642.8296 323590.4936 321532.1983 323726.4182 315246.1016 353860.5993 0.923701779 0.907432398 0.839759638 0.974416382 1.055904021 0.914457541 0.908640857 0.91484166 0.890876526 1 18.43282161 -5.279247321 24.81898807 0.948802293 0.892011376 0.229786286 0.051011397 1256.931954 1751786.726 0.015597045 0.023197354 5.26E-06 5.279247321 -0.056790917 KTVFS(ph)PTLPAAR ddPTM_HeLa_A486_30min_R1 1 KTVFSPTLPAAR 12 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 KTVFS(0.998)PT(0.002)LPAAR 188.9 2.35E-13 435560000 832870 833620 600310 294720 965360 811310 864230 922120 654700 977040 TRUE FALSE FALSE 774490.1139 767560.9152 832766.1089 686123.0543 844275.5472 711218.821 647990.5131 712173.4057 711449.9231 732382.8245 1.057493551 1.048032381 1.137063952 0.936836626 1.15277901 0.97110254 0.88477022 0.972405936 0.971418088 1 19.48223843 -6.494986722 23.51827134 0.951004392 1.062121589 0.430379218 0.0611667 310.6055805 261899.9306 0.020449905 0.017981785 3.20E-07 6.494986722 0.111117198 KTVS(ph)EPNLK ddPTM_HeLa_A485_30min_R1 4 KTVSEPNLK 9 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41;C9JF80;C9JAH2 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 KTVS(1)EPNLK;KTVS(1)EPNLK;KT(0.009)VS(0.991)EPNLK;KTVS(1)EPNLK ;;; 124.48 0.00017946 1622120000 2440180 2023310 1418870 3214650 3113420 2664790 4573260 4262360 2249300 5111490 TRUE FALSE FALSE 2982989.622 2259918.504 1943769.057 3390258.19 2803436.973 2804314.284 3596145.641 3217009.527 2700713.878 3837289.613 0.777368904 0.588936133 0.506547395 0.88350334 0.730577375 0.730806003 0.937157735 0.838354633 0.703807674 1 21.87165622 -5.270705047 24.84690403 0.821229837 0.62074934 0.431390122 0.10878211 573.821125 1538763.715 0.030358697 0.045738934 5.36E-06 5.270705047 -0.200480497 KTVS(ph)EPNLK ddPTM_HeLa_A486_30min_R1 4 KTVSEPNLK 9 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41;C9JF80;C9JAH2 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 KT(0.006)VS(0.994)EPNLK;KT(0.002)VS(0.998)EPNLK;KTVS(1)EPNLK;KTVS(1)EPNLK ;;; 160.38 8.12E-06 2018877000 3137520 2778050 1339420 1398350 2633080 3191350 4105960 3989520 2252180 4406260 TRUE FALSE FALSE 2917596.05 2557907.201 1858079.295 3255429.469 2302814.554 2797633.684 3078605.38 3081193.387 2447400.776 3302903.816 0.883342723 0.774441928 0.562559311 0.985626482 0.697209087 0.847022451 0.932090533 0.932874088 0.740984574 1 21.65530353 -6.51463765 18.54671924 0.894988732 0.778819709 0.183017447 0.120290736 23.67753227 53294.59786 0.043375333 0.035461772 3.06E-07 6.51463765 -0.116169023 KTVSLTPS(ph)PTTQVETPDLVDHDNTSPLFR ddPTM_HeLa_A485_30min_R1 1 KTVSLTPSPTTQVETPDLVDHDNTSPLFR 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 KTVSLT(0.005)PS(0.995)PTTQVETPDLVDHDNTSPLFR 274.5 3.41E-77 512530000 104750 181830 148190 101560 204990 197840 224750 304300 149080 156750 TRUE FALSE FALSE 128051.2761 203093.4368 203011.6477 107107.9656 184580.4758 208198.5965 176730.3265 229669.9479 178998.9886 117675.1098 1.08817639 1.725882705 1.725187664 0.910200686 1.568560048 1.769266219 1.501849684 1.9517292 1.521128715 1 16.84444967 -5.975837924 24.99566057 1.612407335 1.39238591 0.054903889 0.328993116 585.0846363 605267.0143 0.099793431 0.113150712 1.06E-06 5.975837924 -0.220021425 KTVSLTPS(ph)PTTQVETPDLVDHDNTSPLFR ddPTM_HeLa_A486_30min_R1 1 KTVSLTPSPTTQVETPDLVDHDNTSPLFR 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 KTVSLT(0.002)PS(0.978)PT(0.017)T(0.002)QVETPDLVDHDNTSPLFR 86.867 0.0016148 375110000 36128 26093 28526 9193.3 44876 35774 43648 44733 26047 36878 TRUE FALSE FALSE 33595.61377 24025.29565 39572.03115 21402.467 39247.23363 31360.5676 32726.80874 34548.27241 28304.77493 27643.50876 1.215316552 0.869111655 1.431512602 0.774231201 1.419763097 1.134464075 1.183887654 1.249778844 1.02392121 1 14.75465313 -3.932229871 21.39660317 1.133472847 3.522330531 0.015611216 0.203866987 3658.910053 1430098.244 0.045056999 98961.74148 0.000116888 3.932229871 2.388857684 KTVSLTPSPTTQVETPDLVDHDNTS(ph)PLFR ddPTM_HeLa_A485_30min_R1 2 KTVSLTPSPTTQVETPDLVDHDNTSPLFR 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 KTVSLTPSPTTQVETPDLVDHDNT(0.254)S(0.746)PLFR;KTVSLTPSPTTQVETPDLVDHDNT(0.087)S(0.913)PLFR ; 275.4 3.21E-77 1042050000 494470 674310 598040 441370 667100 748390 850610 958980 554010 660370 TRUE FALSE FALSE 604463.1456 753164.6888 819279.8825 465480.9255 600681.1817 787574.5432 668870.2247 723788.6514 665194.7253 495751.9122 1.219285555 1.519237083 1.652600549 0.938939244 1.211656812 1.588646506 1.349203519 1.459981562 1.34178953 1 18.91925881 -8.05107296 20.82691434 0.999999997 1.371272094 0.234467122 0.198024242 2629.532747 1072291.801 0.197098932 0.050890725 8.89E-09 8.05107296 0.371272097 KTYVTPR ddPTM_HeLa_A485_30min_R1 1 KTYVTPR 7 1 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 RPS9 40S ribosomal protein S9 0 0 88.948 0.023189 16446000 12103 18774 16203 18388 27868 21741 25772 31049 22657 34417 FALSE FALSE TRUE 14795.2706 20969.45599 22197.16396 19392.48988 25093.36407 22879.32514 20265.60166 23434.18407 27204.05208 25837.4753 0.57262834 0.811590751 0.859107312 0.750556688 0.971200312 0.885509318 0.784349145 0.906984285 1.052891266 1 14.65717748 -3.067527336 0.372606461 0.950281356 2.10E-59 0.606221618 0.082931085 11.54760093 0.63637633 0.070903424 5.87568654 0.000855998 3.067527336 -0.950281356 KVACIGAWHPAR ddPTM_HeLa_A485_30min_R1 2 KVACIGAWHPAR 12 1 H7C422;P39023;B5MCW2;G5E9G0;Q92901 H7C422 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like 0 0 ; ; 86.313 0.0057712 34363000 43088 65645 54507 37187 66253 64160 68564 92829 55675 55520 FALSE FALSE TRUE 52672.77695 73321.61171 74671.40753 39218.43165 59656.61869 67519.31839 53914.74128 70062.5422 66848.46182 41679.88577 1.263745713 1.759160573 1.791545398 0.940943837 1.431304755 1.619949699 1.293543403 1.680967712 1.603854247 1 15.3470637 KVACIGAWHPAR ddPTM_HeLa_A486_30min_R1 2 KVACIGAWHPAR 12 1 H7C422;P39023;B5MCW2;G5E9G0;Q92901 H7C422 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like 0 0 ; ; 134.2 0.00016959 27065000 56540 56622 67648 21324.3 88041 47242 57886 61313 52134 58549 FALSE FALSE TRUE 52576.83797 52135.06651 93843.11728 49644.04807 76998.07683 41413.76236 43402.31054 47353.36835 56653.0171 43887.94931 1.197978917 1.187913022 2.138243385 1.131154425 1.75442412 0.943624913 0.988934576 1.078960605 1.290855872 1 15.42153724 -6.274847145 24.90013596 1.06093893 1.482580699 0.337693291 0.295121582 902.6208585 1676291.092 0.102589599 0.090983091 5.31E-07 6.274847145 0.421641768 KVAEPELMGT(ph)PDGTCYPPPPVPR ddPTM_HeLa_A485_30min_R1 1 KVAEPELMGTPDGTCYPPPPVPR 23 1 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KVAEPELMGT(0.995)PDGT(0.005)CYPPPPVPR 86.869 0.0021864 357740000 43608 41044 50778 48562 66792 48003 61876 65797 51879 66583 TRUE FALSE FALSE 53308.44915 45843.73876 69562.89525 51214.81909 60141.95396 50516.36285 48655.68712 49660.18258 62290.63944 49985.08347 1.066487149 0.917148389 1.391673084 1.024602052 1.20319803 1.010628759 0.973404139 0.993500043 1.246184564 1 15.60921001 -6.292498044 23.90343748 1.039878541 1.119041703 0.071424405 0.136172591 1178.821508 907241.9538 0.047666749 0.042044248 5.10E-07 6.292498044 0.079163162 KVAGAAT(ph)PK ddPTM_HeLa_A485_30min_R1 2 KVAGAATPK 9 1 P16402 P16402 HIST1H1D Histone H1.3 1 0 KVAGAAT(1)PK;KVAGAAT(1)PK ; 63.76 0.020842 3990400000 4117000 3238900 1609710 7581900 3102600 3792000 5615500 12683900 3905000 15718000 TRUE FALSE FALSE 5032812.447 3617661.18 2205208.715 7996079.999 2793694.25 3990543.256 4415702.551 9573153.637 4688697.681 11799791.87 0.426517052 0.306586864 0.186885391 0.677645851 0.236757926 0.338187597 0.374218681 0.811298516 0.39735427 1 23.49225808 -8.509665697 0.436629698 1.048550298 0.331964496 0.539932308 0.170944829 1.650055625 0.592547897 0.3431179 0.108973446 3.09E-09 8.509665697 -0.716585802 KVAGAAT(ph)PK ddPTM_HeLa_A486_30min_R1 2 KVAGAATPK 9 1 P16402 P16402 HIST1H1D Histone H1.3 1 0 KVAGAAT(1)PK;KVAGAAT(1)PK ; 79.466 0.0074114 2513600000 5680700 3253300 2365900 3352500 2401100 7825400 6685600 4699600 3593100 9056200 TRUE FALSE FALSE 5282512.265 2995496.66 3282039.841 7804789.426 2099931.649 6859981.711 5012792.167 3629603.672 3904552.801 6788468.574 0.778159641 0.441262507 0.48347279 1.149712832 0.309338053 1.010534502 0.738427543 0.534671941 0.575174321 1 22.69465472 KVAIIRT(ph)PPKS(ph)PATPK ddPTM_HeLa_A485_30min_R1 1 KVAIIRTPPKSPATPK 16 3 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 KVAIIRT(1)PPKS(0.998)PAT(0.002)PK 102.33 0.0026871 761930000 579190 463430 260490 903540 638140 753260 1248400 1326500 451530 1305400 TRUE FALSE FALSE 708028.8173 517624.1072 356856.0909 952898.1023 574604.541 792699.5288 981669.1415 1001173.795 542147.9293 979987.8041 0.722487376 0.528194438 0.3641434 0.972357103 0.586338461 0.808887137 1.001715672 1.021618627 0.553219057 1 19.90240427 -5.774249908 1.061176012 0.885687689 0.560084434 0.291225159 0.191341638 0.648203377 1.558103418 0.08540439 0.128112768 1.68E-06 5.774249908 -0.325603256 KVAIIRT(ph)PPKS(ph)PATPK ddPTM_HeLa_A486_30min_R1 1 KVAIIRTPPKSPATPK 16 3 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 KVAIIRT(1)PPKS(0.984)PAT(0.016)PK 124.35 0.00016781 713550000 849330 666240 282880 555180 682840 822470 1513700 1305500 511290 1606400 TRUE FALSE FALSE 789796.3529 613444.716 392418.7118 1292487.097 597191.84 721002.0137 1134956.25 1008266.149 555609.0289 1204146.984 0.655896966 0.509443385 0.325889378 1.073363231 0.495945967 0.598765785 0.942539627 0.837328135 0.461412964 1 20.19958007 -14 0.049814283 2.315977812 6.52E-11 0.189094793 0.219309327 933.5216056 3.431995914 165.0663161 37.04233155 1.00E-14 14 -2.315977812 KVAIIRT(ph)PPKSPAT(ph)PK ddPTM_HeLa_A485_30min_R1 1 KVAIIRTPPKSPATPK 16 3 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 KVAIIRT(0.998)PPKS(0.375)PAT(0.627)PK 76.027 0.022494 341480000 297980 239500 125730 439430 327750 356910 630290 666020 219700 573430 TRUE FALSE FALSE 364264.623 267507.4416 172242.7591 463434.9482 295118.0592 375597.2557 495623.3925 502677.5507 263791.7748 430484.4542 0.846173699 0.621410225 0.400113773 1.07654282 0.685548703 0.872499 1.151315425 1.167701983 0.612778864 1 18.71560161 -5.787503273 1.157033166 0.979878507 0.65151594 0.235881686 0.214761207 0.661353049 1.876947605 0.092317581 0.132557208 1.63E-06 5.787503273 -0.328362567 KVAIIRT(ph)PPKSPATPK ddPTM_HeLa_A485_30min_R1 3 KVAIIRTPPKSPATPK 16 3 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 KVAIIRT(0.976)PPKS(0.024)PATPK;KVAIIRT(1)PPKSPATPK;KVAIIRT(0.999)PPKS(0.001)PATPK ;; 109.89 0.0001791 8817000000 5422030 4776970 2615880 6634000 6307410 7500600 11464600 13521200 5025620 9257600 TRUE FALSE FALSE 6628141.868 5335595.087 3583602.868 6996398.622 5679422.114 7893319.818 9015094.553 10205104.5 6034215.836 6949850.694 0.953709966 0.767728016 0.515637389 1.006697688 0.817200594 1.13575387 1.297163774 1.468391905 0.868251147 1 22.72855055 -6.281059838 2.982548623 1.201719218 0.796482373 0.42630259 0.195289151 0.235412514 4.242414932 0.072363211 0.066333308 5.24E-07 6.281059838 -0.405236845 KVAIIRT(ph)PPKSPATPK ddPTM_HeLa_A486_30min_R1 2 KVAIIRTPPKSPATPK 16 3 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 KVAIIRT(0.995)PPKS(0.005)PATPK;KVAIIRT(0.997)PPKS(0.003)PATPK ; 122.64 1.19E-05 5364400000 7173500 5659400 2398500 3446400 5871700 6827900 9042100 9227500 3959600 9797700 TRUE FALSE FALSE 6670674.694 5210928.533 3327263.434 8023393.371 5135216.635 5985543.119 6779670.942 7126599.685 4302821.316 7344292.148 0.908280139 0.709520867 0.453040724 1.092466532 0.699211923 0.814992514 0.923121086 0.970358959 0.585872842 1 22.80819202 -5.263039239 24.99965265 0.86107316 0.69220462 0.183900497 0.172302783 257.2890577 4020465.7 0.046858863 0.073871769 5.46E-06 5.263039239 -0.16886854 KVAVAT(ph)PAKK ddPTM_HeLa_A485_30min_R1 1 KVAVATPAKK 10 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVAVAT(1)PAKK 85.457 0.020436 1627800000 1138600 729820 553550 1366500 1246400 1284700 1700700 1882600 913420 1793600 TRUE FALSE FALSE 1391877.642 815166.1004 758331.1801 1441148.435 1122304.04 1351964.905 1337331.552 1420889.398 1096735.016 1346488.529 1.033709246 0.605401445 0.563191712 1.070301309 0.833504345 1.004067154 0.993199365 1.05525548 0.814514934 1 20.36077051 -5.269284193 24.9347599 0.966606421 0.721230862 0.363863237 0.140968258 566.9935393 1802189.695 0.038859103 0.058839207 5.38E-06 5.269284193 -0.245375559 KVAVAT(ph)PAKK ddPTM_HeLa_A486_30min_R1 1 KVAVATPAKK 10 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVAVAT(1)PAKK 115.34 0.00048283 3102000000 7192200 6664900 2847100 4054100 6019600 7955100 9821000 9083300 5046000 10325000 TRUE FALSE FALSE 6688063.921 6136749.051 3949573.368 9438149.683 5264565.637 6973680.644 7363681.924 7015230.877 5483391.343 7739552.796 0.864140874 0.792907447 0.510310282 1.219469643 0.680215741 0.901044392 0.951435066 0.906412949 0.708489429 1 22.88381878 -5.236714725 24.99689116 0.897512992 0.729498405 0.211187942 0.164407961 1345.076474 1359885.123 0.042981593 0.074404817 5.80E-06 5.236714725 -0.168014586 KVAVATPAK(ac)K ddPTM_HeLa_A485_30min_R1 1 KVAVATPAKK 10 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 KVAVATPAK(1)K 95.477 0.0050837 0 27118 29040 34068 30724 44007 54831 85553 119190 79404 113640 FALSE TRUE FALSE 33150.30554 32435.97539 46671.17089 32402.37432 39625.50856 57701.86638 67273.90265 89958.46562 95339.65446 85311.63939 0.38857893 0.380205745 0.547066862 0.379811882 0.464479511 0.676365696 0.788566521 1.054468842 1.117545685 1 16.38045497 -6.796552579 1.257563268 1.083605598 0.423698821 0.949727145 0.062415422 0.091485028 0.288756613 0.041498198 0.023101541 1.60E-07 6.796552579 -0.659906778 down KVAVATPAK(ac)K ddPTM_HeLa_A486_30min_R1 1 KVAVATPAKK 10 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 KVAVATPAK(1)K 99.5 0.0043545 0 56512 61236 42561 22454 70231 65394 67245 70173 54540 82892 FALSE TRUE FALSE 52550.80063 56383.43634 59041.75902 52274.04676 61421.9731 57326.35316 50419.58975 54196.13977 59267.57111 62135.30366 0.845747868 0.907429964 0.95021277 0.841293817 0.988519722 0.922605182 0.811448352 0.872227809 0.95384697 1 15.92312558 -7.969524139 4.401765178 0.999594388 0.894965538 0.326173034 0.050571208 0.20964575 9.7463768 0.049843515 0.013056975 1.07E-08 7.969524139 -0.10462885 KVCASGK(ac)R ddPTM_HeLa_A485_30min_R1 1 KVCASGKR 8 2 A0A590UJY3;P63151;P63151-2;E5RFR9;A0A590UJJ1 A0A590UJY3 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 1 KVCASGK(1)R 109.66 0.025723 27487000 39242 37832 24705 29721 20232 45868 37131 59632 34938 40414 FALSE TRUE FALSE 47971.24752 42256.12331 33844.40756 31344.58297 18217.63104 48269.57755 29197.65852 45007.1585 41949.73613 30339.53356 1.581146507 1.392774323 1.115521684 1.033126726 0.600458507 1.590979553 0.962363461 1.483449256 1.382675711 1 14.88891129 -4.564977722 3.152288402 1.149312519 1.562128455 0.214698883 0.271389762 0.399935879 7.710965807 0.072378333 0.284587236 2.72E-05 4.564977722 0.412815937 KVDEGAGDSAAVASGGAQTLALAGS(ph)PAPSGHPK ddPTM_HeLa_A485_30min_R1 4 KVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 33 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK;KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK;KVDEGAGDSAAVASGGAQTLALAGS(0.996)PAPS(0.004)GHPK;KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK ;;; 300.46 4.67E-93 6603600000 2585990 2394740 1731230 2549860 3190540 2993310 4218080 4443550 2584460 4504410 TRUE FALSE FALSE 3161234.554 2674784.012 2371684.019 2689152.395 2872878.635 3150035.083 3316852.749 3353762.395 3103137.416 3381543.485 0.934849594 0.790995007 0.701361384 0.795244068 0.849576132 0.931537654 0.980869465 0.991784494 0.917668937 1 21.68925048 -6.224821941 2.161656457 0.971199793 0.798022257 0.641590487 0.057177305 0.208013757 1.909169944 0.023279908 0.021969317 5.96E-07 6.224821941 -0.173177535 KVDEGAGDSAAVASGGAQTLALAGS(ph)PAPSGHPK ddPTM_HeLa_A486_30min_R1 4 KVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 33 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK;KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK;KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK;KVDEGAGDSAAVASGGAQTLALAGS(1)PAPSGHPK ;;; 318.97 9.49E-110 7816400000 3575320 3567580 1866300 497891 3513250 3656270 4498550 4338920 2927880 3735640 TRUE FALSE FALSE 3324708.531 3284871.968 2588981.341 1159115.41 3072585.425 3205196.582 3372965.209 3351042.634 3181670.996 2800211.429 1.18730625 1.17307998 0.924566379 0.413938533 1.097269082 1.144626634 1.204539477 1.196710577 1.136225273 1 21.41710433 -5.978656228 24.99985521 1.149414217 0.919095532 0.194580925 0.204806209 401.4837659 470253.6491 0.068892119 0.078110315 1.05E-06 5.978656228 -0.230318686 KVDHPLSEQVHQPLLEEQCS(ph)IDEPLFEDQCSFDQPQPEEQCIK ddPTM_HeLa_A485_30min_R1 2 KVDHPLSEQVHQPLLEEQCSIDEPLFEDQCSFDQPQPEEQCIK 43 1 F8VNY5;Q9P031 F8VNY5 CCDC59 Thyroid transcription factor 1-associated protein 26 1 0 KVDHPLS(0.16)EQVHQPLLEEQCS(0.805)IDEPLFEDQCS(0.035)FDQPQPEEQCIK;KVDHPLS(0.002)EQVHQPLLEEQCS(0.998)IDEPLFEDQCSFDQPQPEEQCIK ; 149.27 2.56E-11 244297000 48865 29507.2 42227 52019 72150 39028 64334 48285 50234 97084 TRUE FALSE FALSE 59734.85067 32957.81036 57848.52451 54860.66625 64966.49267 41071.44573 50588.51534 36443.02804 60315.50303 72882.7455 0.819602092 0.452203195 0.793720436 0.752725023 0.891383718 0.563527697 0.694108256 0.500022712 0.82756903 1 16.15328969 -8.0031677 24.78923004 1.000000019 0.683660592 0.356194531 0.134293901 94.91492291 742776.2766 0.127140797 0.032827613 9.93E-09 8.0031677 -0.316339426 KVDHPLSEQVHQPLLEEQCS(ph)IDEPLFEDQCSFDQPQPEEQCIK ddPTM_HeLa_A486_30min_R1 2 KVDHPLSEQVHQPLLEEQCSIDEPLFEDQCSFDQPQPEEQCIK 43 1 F8VNY5;Q9P031 F8VNY5 CCDC59 Thyroid transcription factor 1-associated protein 26 1 0 KVDHPLSEQVHQPLLEEQCS(1)IDEPLFEDQCSFDQPQPEEQCIK;KVDHPLS(0.014)EQVHQPLLEEQCS(0.984)IDEPLFEDQCS(0.003)FDQPQPEEQCIK ; 117.19 3.16E-07 557300000 40715 84231 49694 20527.8 86061 79670 103337 94753 55878 60227 TRUE FALSE FALSE 37861.08875 77556.2288 68936.84765 47789.75582 75266.42689 69841.12543 77480.98961 73179.81034 60721.55003 45145.76719 0.838640943 1.717906985 1.526983634 1.058565593 1.667186795 1.547013813 1.716240402 1.620967256 1.345010924 1 15.46230311 -4.248584519 24.40357313 1.491768237 0.838640359 0.36627604 0.24582942 1570.514222 2981381.087 0.0594346 1.032125795 5.64E-05 4.248584519 -0.653127877 KVDLTLLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 KVDLTLLSPK 10 1 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KVDLT(0.001)LLS(0.999)PK;KVDLTLLS(1)PK ; 82.822 0.0034349 5046800000 13153000 11083400 7729600 17996000 13835500 13400600 19608100 18606200 9089400 25035000 TRUE FALSE FALSE 16078839.47 12379507.22 10589100.7 18979075.91 12457989.04 14102234.69 15418669.25 14043000.28 10913559.21 18794235.24 0.855519752 0.658686404 0.563422803 1.009834967 0.662862249 0.750348951 0.820393544 0.747197218 0.580686528 1 24.16378688 -10.23918059 4.895872763 1.000048991 0.739988335 0.274974724 0.127239896 6.62E-05 1.03E-05 0.119889592 0.029072028 5.77E-11 10.23918059 -0.260060656 KVDLTLLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 KVDLTLLSPK 10 1 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KVDLTLLS(1)PK;KVDLT(0.001)LLS(0.999)PK ; 98.694 0.0011179 2670960000 8851060 7107160 3697400 5578260 6160790 8132870 11754270 9575770 5624780 14216080 TRUE FALSE FALSE 8230646.401 6543962.758 5129132.3 12986471.19 5388046.271 7129519.188 8813227.322 7395576.209 6112340.459 10656281.04 0.772375125 0.614094423 0.481324796 1.218668234 0.505621638 0.66904384 0.827045316 0.694010995 0.573590396 1 23.3452007 -10.31780519 3.719331843 1.000830422 0.708150986 0.162559913 0.200009804 268745794.5 382966893.2 2455402.918 0.048515948 4.81E-11 10.31780519 -0.292679435 KVDT(ph)TPNQGK ddPTM_HeLa_A485_30min_R1 3 KVDTTPNQGK 10 1 Q9P2E9;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 KVDT(0.655)T(0.345)PNQGK;KVDT(0.674)T(0.326)PNQGK;KVDT(0.647)T(0.353)PNQGK ;; 131.69 9.38E-05 892555000 538360 436150 234840 738200 437770 450160 778930 887760 440900 1151040 TRUE FALSE FALSE 658116.3247 487153.9485 321717.0885 778525.9968 394184.0817 473729.6815 612505.2422 670035.468 529384.5858 864106.9113 0.761614467 0.563765828 0.372311671 0.900960271 0.456175129 0.548230404 0.708830394 0.775408065 0.612637833 1 19.72085029 -9.193521756 0.416141377 1.069494178 0.594977126 0.358953364 0.149144838 6.15391386 1.238227505 0.824809932 0.09615261 6.40E-10 9.193521756 -0.474517052 KVDT(ph)TPNQGK ddPTM_HeLa_A486_30min_R1 4 KVDTTPNQGK 10 1 Q9P2E9;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 KVDT(0.5)T(0.5)PNQGK;KVDT(0.651)T(0.349)PNQGK;KVDT(0.5)T(0.5)PNQGK;KVDT(0.642)T(0.358)PNQGK ;;; 96.059 0.0020011 619928000 1754670 1230300 766399 777760 1195530 2031670 2113640 1708560 1541920 2659550 TRUE FALSE FALSE 1631676.694 1132806.547 1063169.218 1810664.586 1045575.48 1781023.212 1584784.916 1319558.186 1675574.867 1993581.369 0.81846506 0.568226893 0.533296124 0.908247144 0.524470932 0.89337874 0.794943683 0.661903349 0.840484814 1 20.92693106 -11.5334203 0.150974606 1.472768169 0.603506373 0.310605408 0.134249807 65.50984541 1.197616094 11.04282879 0.758857223 2.93E-12 11.5334203 -0.869261797 KVDTT(ph)PNQGK ddPTM_HeLa_A485_30min_R1 3 KVDTTPNQGK 10 1 Q9P2E9;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 KVDT(0.091)T(0.909)PNQGK;KVDT(0.093)T(0.907)PNQGK;KVDT(0.086)T(0.914)PNQGK ;; 163.33 4.40E-07 1870210000 2432150 2120670 1196560 3546450 2155120 2326020 3626770 4286100 2224840 5870800 TRUE FALSE FALSE 2973173.377 2368663.909 1639217.337 3740183.583 1940548.686 2447806.81 2851880.962 3234927.255 2671344.981 4407317.604 0.674599301 0.537438896 0.37193084 0.848630373 0.44030153 0.555396055 0.647078613 0.733990047 0.606115833 1 22.07146943 -9.477479091 0.366230408 1.121149446 0.556973824 0.478148154 0.127957281 6.985815903 0.95411288 1.168358273 0.099506521 3.33E-10 9.477479091 -0.564175621 KVDTT(ph)PNQGK ddPTM_HeLa_A486_30min_R1 1 KVDTTPNQGK 10 1 Q9P2E9;A2A2S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 KVDT(0.127)T(0.873)PNQGK 107.37 0.00075676 566690000 1722300 1062400 754580 783430 1064500 2136900 2092200 1702000 1553500 2799900 TRUE FALSE FALSE 1601575.664 978211.5548 1046773.584 1823864.632 930980.4839 1873271.004 1568709.431 1314491.754 1688158.631 2098786.816 0.763095924 0.466084286 0.498751744 0.869009 0.443580299 0.892549444 0.74743629 0.626310278 0.804349741 1 21.0011242 -13.99994249 0.103349225 2.107579118 0.452044985 0.343924403 0.148896811 197.5170546 1.376139331 46.22230974 2.215913157 1.00E-14 13.99994249 -1.655534133 KVEAPETNIDKT(ph)PK ddPTM_HeLa_A485_30min_R1 3 KVEAPETNIDKTPK 14 2 O75152;E9PQ61;E9PBY7 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 KVEAPET(0.003)NIDKT(0.997)PK;KVEAPETNIDKT(1)PK;KVEAPETNIDKT(1)PK ;; 172.84 2.58E-12 3354920000 2344950 1281830 714750 4536300 2091560 2121330 4125600 3577700 1394880 6423100 TRUE FALSE FALSE 2866576.038 1431728.868 979165.7682 4784106.582 1883316.942 2232399.559 3244131.857 2700263.465 1674819.621 4821939.378 0.594486121 0.296919715 0.20306472 0.992154029 0.390572505 0.462967156 0.672785699 0.559995316 0.347333197 1 22.20118208 -11.2111022 2.188076156 2.436530349 0.504096891 0.330980043 0.212284628 7387291.443 1346296.517 52532512.87 0.052958642 6.15E-12 11.2111022 -1.932433458 KVEAPETNIDKT(ph)PK ddPTM_HeLa_A486_30min_R1 2 KVEAPETNIDKTPK 14 2 O75152;E9PQ61;E9PBY7 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 KVEAPETNIDKT(1)PK;KVEAPETNIDKT(1)PK ; 191.64 8.13E-18 2043060000 2329100 1851390 567310 1990140 1270050 2423500 3738300 3158600 1364230 4860300 TRUE FALSE FALSE 2165842.117 1704679.114 786987.6251 4633146.496 1110748.486 2124513.21 2802937.8 2439455.732 1482482.555 3643249.245 0.594480908 0.467900766 0.216012568 1.271707255 0.304878533 0.583136938 0.769351096 0.669582444 0.406912197 1 21.79679427 -11.41884712 2.26274107 4.616770904 0.59218994 0.16539999 0.278035897 32642563.44 3219508.041 604007871.5 0.069300244 3.81E-12 11.41884712 -4.024580964 KVEEDLKADEPS(ph)S(ph)EES(ph)DLEIDK ddPTM_HeLa_A486_30min_R1 1 KVEEDLKADEPSSEESDLEIDK 22 2 F6VDH7;Q3KNR6;P50502 F6VDH7 ST13 Hsc70-interacting protein 3 0 KVEEDLKADEPS(1)S(1)EES(1)DLEIDK 80.984 0.003725 264090000 350680 219630 60202 259330 121740 334520 424790 374770 146260 1013900 TRUE FALSE FALSE 326099.1429 202225.7189 83513.82667 603733.3458 106470.234 293250.3236 318503.049 289443.0522 158937.9346 760012.8406 0.42907057 0.266081977 0.109884757 0.79437256 0.140090046 0.38584917 0.419075879 0.380839687 0.209125328 1 19.53566427 -10.91389008 2.836389232 1.370349288 0.349981294 0.529742636 0.184209582 67472034.79 42690387.94 166332795.6 0.044540088 1.22E-11 10.91389008 -1.020367994 KVEEDLKADEPS(ph)SEES(ph)DLEIDK ddPTM_HeLa_A486_30min_R1 2 KVEEDLKADEPSSEESDLEIDK 22 2 F6VDH7;Q3KNR6;P50502 F6VDH7 ST13 Hsc70-interacting protein 2 0 KVEEDLKADEPS(0.528)S(0.481)EES(0.992)DLEIDK;KVEEDLKADEPS(0.788)S(0.262)EES(0.95)DLEIDK ; 121.7 1.05E-05 1755750000 938450 693400 200204 514930 333460 860440 1152430 907380 453910 2293800 TRUE FALSE FALSE 872669.5012 638452.4587 277728.3504 1198783.063 291634.3374 754287.6611 864079.8248 700789.382 493255.2843 1719417.55 0.507537859 0.371319031 0.161524669 0.697202994 0.169612284 0.438687892 0.502542169 0.407573705 0.286873473 1 20.71348851 -10.72747715 2.89700839 1.098478019 0.393443675 0.584550045 0.153352539 58424131.32 53594472.97 41690422.34 0.036020925 1.87E-11 10.72747715 -0.705034344 KVEEDLKADEPSS(ph)EES(ph)DLEIDK ddPTM_HeLa_A485_30min_R1 3 KVEEDLKADEPSSEESDLEIDK 22 2 F6VDH7;Q3KNR6;P50502 F6VDH7 ST13 Hsc70-interacting protein 2 0 KVEEDLKADEPS(0.143)S(0.857)EES(1)DLEIDK;KVEEDLKADEPS(0.359)S(0.838)EES(0.804)DLEIDK;KVEEDLKADEPS(0.178)S(0.822)EES(1)DLEIDK ;; 175.23 1.25E-14 1465170000 2118480 1398900 496030 3989750 1039840 1604020 2879670 2289710 831092 4396130 TRUE FALSE FALSE 2589728.567 1562489.186 679532.1385 4207699.94 936309.8785 1688004.007 2264404.98 1728155.032 997884.5412 3300255.696 0.784705431 0.473444887 0.205902876 1.274961799 0.283708283 0.511476735 0.686130163 0.523642769 0.302365827 1 21.65414637 -10.21746717 5.255384525 1.000033826 0.56171423 0.168530692 0.292718608 0.000111693 1.66E-05 0.272872391 0.06617618 6.06E-11 10.21746717 -0.438319595 KVEEDLKADEPSS(ph)EES(ph)DLEIDK ddPTM_HeLa_A486_30min_R1 2 KVEEDLKADEPSSEESDLEIDK 22 2 F6VDH7;Q3KNR6;P50502 F6VDH7 ST13 Hsc70-interacting protein 2 0 KVEEDLKADEPS(0.117)S(0.883)EES(1)DLEIDK;KVEEDLKADEPS(0.554)S(0.614)EES(0.832)DLEIDK ; 133.61 8.27E-07 352070000 662040 468200 113568 406840 212149 639880 847600 636930 310711 1829890 TRUE FALSE FALSE 615634.4148 431098.1268 157544.5711 947144.0806 185539.2942 560938.1114 635521.515 491914.9431 337643.6797 1371673.633 0.448819894 0.314286224 0.114855726 0.690502505 0.135264898 0.408944298 0.463318314 0.358623896 0.246154531 1 20.38750583 -10.81911901 2.60497952 1.218360903 0.353767842 0.595614892 0.159830042 24415815.72 16475048.26 33477851.76 0.040656394 1.52E-11 10.81911901 -0.864593061 KVEEDLKADEPSSEES(ph)DLEIDK ddPTM_HeLa_A485_30min_R1 1 KVEEDLKADEPSSEESDLEIDK 22 2 F6VDH7;Q3KNR6;P50502 F6VDH7 ST13 Hsc70-interacting protein 1 0 KVEEDLKADEPSSEES(1)DLEIDK 257.07 1.66E-59 637280000 507190 308080 121040 848330 202500 399950 626290 537200 181930 959380 TRUE FALSE FALSE 620012.6657 344107.2761 165817.7329 894672.1198 182338.389 420890.7636 492478.0252 405450.8577 218441.6822 720224.2221 0.860860614 0.477777983 0.230230708 1.242213317 0.253168921 0.584388515 0.683784313 0.562950877 0.303296773 1 19.45808659 -10.84392469 6.809814865 1.036569395 0.57736855 0.159730586 0.290622002 0.125847814 0.002884325 0.219470627 0.065095027 1.43E-11 10.84392469 -0.459200845 KVEEDLKADEPSSEES(ph)DLEIDK ddPTM_HeLa_A486_30min_R1 2 KVEEDLKADEPSSEESDLEIDK 22 2 F6VDH7;Q3KNR6;P50502 F6VDH7 ST13 Hsc70-interacting protein 1 0 KVEEDLKADEPS(0.095)S(0.095)EES(0.809)DLEIDK;KVEEDLKADEPS(0.034)S(0.034)EES(0.932)DLEIDK ; 85.982 0.00090345 1364460000 598600 488750 140197 311310 292340 562950 668910 568240 299720 1299460 TRUE FALSE FALSE 556641.2312 450019.67 194485.033 724745.4127 255671.9912 493498.9527 501541.643 438864.1566 325699.9709 974066.7579 0.571461069 0.46200085 0.19966294 0.744040803 0.262478921 0.506637711 0.514894527 0.450548336 0.334371303 1 19.89366113 -10.48767746 3.251047107 1.011840454 0.44936922 0.553487037 0.148316449 98614376.6 123753327 10513124.25 0.034156986 3.25E-11 10.48767746 -0.562471234 KVEEEGS(ph)PGDPDHEASTQGR ddPTM_HeLa_A485_30min_R1 5 KVEEEGSPGDPDHEASTQGR 20 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR ;;;; 195.38 3.90E-20 10852340000 3445570 3843450 3349610 4139630 4657990 4171290 6062270 6041450 3629310 5877790 TRUE FALSE FALSE 4212025.159 4292908.044 4588770.128 4365767.505 4194224.16 4389692.294 4767016.49 4559774.915 4357679.227 4412565.126 0.95455252 0.972882648 1.039932556 0.989394463 0.950518359 0.994816432 1.080327736 1.033361499 0.987561453 1 22.07318614 -6.542269904 24.98899904 1.029446994 0.983469296 0.286989503 0.032377347 312.3199948 402477.1885 0.01283915 0.009946314 2.87E-07 6.542269904 -0.045977697 KVEEEGS(ph)PGDPDHEASTQGR ddPTM_HeLa_A486_30min_R1 3 KVEEEGSPGDPDHEASTQGR 20 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(1)PGDPDHEASTQGR ;; 182.41 5.14E-19 11849500000 5700750 5729000 3742400 1724700 5905550 5781490 7230020 7050390 4579090 6936550 TRUE FALSE FALSE 5301156.864 5275013.175 5191557.505 4015188.762 5164820.852 5068228.546 5420992.525 5445170.106 4976009.208 5199592.731 1.019533094 1.014505068 0.998454643 0.772212165 0.993312576 0.974735678 1.042580218 1.047230117 0.956999801 1 22.30996719 -6.437728846 2.811785633 1.014682311 0.954503529 0.102159479 0.07078206 0.636068397 9.821307125 0.029726353 0.024774695 3.65E-07 6.437728846 -0.060178782 KVEEEQEADEEDVS(ph)EEEAESK ddPTM_HeLa_A485_30min_R1 5 KVEEEQEADEEDVSEEEAESK 21 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK ;;;; 355.71 2.53E-128 7623700000 5644789 2888747 1485236 8265637 2593344 3364684 5260628 5375442 2931038 18157200 TRUE FALSE FALSE 6900452.839 3226560.833 2034686.602 8717167.82 2335141.566 3540853.651 4136651.852 4057106.421 3519270.442 13630944.2 0.506234399 0.236708535 0.149269674 0.639513132 0.171311798 0.259765839 0.303475078 0.297639427 0.258182441 1 23.70038216 -10.59446606 4.448855591 1.010838835 0.309528954 0.676236872 0.142465176 0.014809745 0.001349977 0.133382772 0.032245785 2.54E-11 10.59446606 -0.701309881 KVEEEQEADEEDVS(ph)EEEAESK ddPTM_HeLa_A486_30min_R1 4 KVEEEQEADEEDVSEEEAESK 21 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(1)EEEAESK ;;; 312.07 3.80E-102 7165640000 4677110 3693340 1617160 1980510 2993900 4911140 5513590 4195530 3507840 7777820 TRUE FALSE FALSE 4349268.742 3400666.287 2243367.661 4610727.369 2618377.145 4305253.48 4134031.465 3240299.407 3811902.396 5830203.247 0.745989215 0.583284346 0.384783783 0.790834757 0.449105637 0.73843969 0.709071586 0.555778121 0.653819813 1 22.47511475 -13.99999995 0.316437628 4.529558652 0.602283554 0.448397832 0.125528572 281.8670841 2.525287035 664.7793885 0.111799286 1.00E-14 13.99999995 -3.927275098 KVEGNFNPFAS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 KVEGNFNPFASPQK 14 1 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 0 KVEGNFNPFAS(1)PQK;KVEGNFNPFAS(1)PQK ; 153.11 2.37E-08 3132400000 1603360 1303520 955350 2145800 1838840 1666110 2514970 2377580 1408900 2640720 TRUE FALSE FALSE 1960021.9 1455955.325 1308773.72 2263019.621 1655758.633 1753344.943 1977626.114 1794474.777 1691653.307 1982437.103 0.988693108 0.734426995 0.660184234 1.141534134 0.835213703 0.884439128 0.997573195 0.905186235 0.853320039 1 20.91884366 -5.241445873 24.99891388 0.936425506 0.788434027 0.265934529 0.114082267 1144.275074 1430744.476 0.030476754 0.052697868 5.74E-06 5.241445873 -0.147991479 KVEGNFNPFAS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 KVEGNFNPFASPQK 14 1 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 0 KVEGNFNPFAS(1)PQK;KVEGNFNPFAS(1)PQK ; 202.81 4.20E-22 3578700000 6959000 6590200 3141600 3076700 5819800 7446900 9144700 8431800 4932700 9380500 TRUE FALSE FALSE 6471210.036 6067968.551 4358111.655 7162713.088 5089826.417 6528177.193 6856599.337 6512063.205 5360270.408 7031561.743 0.920309068 0.862961711 0.619792845 1.018651809 0.72385433 0.928410705 0.975117561 0.926119039 0.76231577 1 22.74541372 KVELS(ph)ES(ph)EEDKGGK ddPTM_HeLa_A485_30min_R1 4 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK ;;; 116.65 9.87E-05 9396100000 2485790 1460400 878770 5653290 2346620 2253000 4587610 3682510 1369680 7561000 TRUE FALSE FALSE 3038745.41 1631181.076 1203863.592 5962114.918 2112982.273 2370963.596 3607429.646 2779368.649 1644562.213 5676181.85 0.535350257 0.287372942 0.212090385 1.050374191 0.372254154 0.417703953 0.635538068 0.489654617 0.28973036 1 22.43648938 -10.3056547 4.547537351 1.000361295 0.480446914 0.324307877 0.226556277 101800234 230702572.2 251984.1333 0.054761137 4.95E-11 10.3056547 -0.519914381 KVELS(ph)ES(ph)EEDKGGK ddPTM_HeLa_A486_30min_R1 7 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK;KVELS(1)ES(1)EEDKGGK ;;;;;; 159.26 2.56E-09 19050640000 4430040 3581920 1034405 5712490 2559200 5909180 9609560 7751730 2641370 14492010 TRUE FALSE FALSE 4119517.073 3298075.614 1434954.318 13298965.41 2238201.272 5180165.452 7205146.448 5986830.298 2870326.078 10863116.37 0.37922056 0.303603082 0.132094168 1.224231147 0.206036757 0.476858139 0.663266986 0.551115361 0.264226763 1 23.3729347 -11.3372099 2.146715763 3.779026911 0.475269544 0.225746269 0.295893764 13843924.22 1487694.729 186978894.3 0.073049264 4.60E-12 11.3372099 -3.303757367 KVELS(ph)ESEEDKGGK ddPTM_HeLa_A485_30min_R1 4 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KVELS(0.998)ES(0.002)EEDKGGK;KVELS(0.988)ES(0.012)EEDKGGK;KVELS(0.851)ES(0.149)EEDKGGK;KVELS(0.814)ES(0.186)EEDKGGK ;;; 220.34 4.78E-28 13027350000 9522550 5256000 2714736 21611330 8605790 8919390 19404400 15229140 5760850 28255710 TRUE FALSE FALSE 11640808.4 5870643.479 3719029.816 22791902.24 7748967.331 9386395.468 15258491.42 11494169.54 6916999.753 21212081.5 0.548781994 0.276759425 0.17532602 1.074477402 0.365309144 0.442502329 0.719330228 0.541869007 0.326087742 1 24.33838286 -11.34046222 2.143473356 3.683294574 0.500203041 0.278868186 0.242738093 12323836.06 1370171.819 160340455.9 0.060665213 4.57E-12 11.34046222 -3.183091533 KVELS(ph)ESEEDKGGK ddPTM_HeLa_A486_30min_R1 5 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KVELS(1)ESEEDKGGK;KVELS(0.977)ES(0.023)EEDKGGK;KVELS(0.976)ES(0.024)EEDKGGK;KVELS(0.5)ES(0.5)EEDKGGK;KVELS(0.995)ES(0.005)EEDKGGK ;;;; 193.72 2.25E-18 17129130000 10169630 7580400 2195530 9293240 6049210 13002730 18785940 15869070 6037520 26167790 TRUE FALSE FALSE 9456791.453 6979701.497 3045698.014 21635132.37 5290461.675 11398585.37 14085499.11 12256029.18 6560857.095 19615205.06 0.48211535 0.355831177 0.1552723 1.102977629 0.26971228 0.581109672 0.718090842 0.624822893 0.334478129 1 24.22546908 -14 0.163288896 2.715519495 0.402476273 0.237651205 0.256747704 199.4603392 1.848767918 111.990694 1.025716119 1.00E-14 14 -2.313043222 KVELSES(ph)EEDKGGK ddPTM_HeLa_A485_30min_R1 2 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KVELS(0.041)ES(0.959)EEDKGGK;KVELS(0.12)ES(0.88)EEDKGGK ; 96.143 0.00043331 8916000000 792292 454485 262863 1782800 659025 633839 1414960 1197530 438662 1961160 TRUE FALSE FALSE 968534.622 507633.0673 360106.9623 1880189.85 593410.157 667025.8299 1112642.237 903833.8898 526697.4398 1472278.904 0.657847246 0.344794091 0.244591538 1.277060918 0.403055532 0.453056705 0.755727895 0.61390127 0.357742978 1 20.48961957 -11.19490633 2.341090507 2.226993343 0.571044784 0.17603971 0.2805955 16085229.05 3140629.077 104697909.1 0.07072087 6.38E-12 11.19490633 -1.655948559 KVELSES(ph)EEDKGGK ddPTM_HeLa_A486_30min_R1 2 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KVELS(0.205)ES(0.795)EEDKGGK;KVELS(0.012)ES(0.988)EEDKGGK ; 202.07 3.38E-22 6754800000 2825600 2159870 667680 2401100 1639630 3136700 5223100 4080900 1573720 6777500 TRUE FALSE FALSE 2627540.031 1988714.035 926223.5771 5589882.145 1433972.316 2749725.846 3916225.136 3151768.155 1710131.317 5080369.886 0.517194632 0.391450638 0.182314201 1.100290386 0.282257463 0.541245206 0.770854332 0.620381631 0.336615513 1 22.27650211 -14 0.217319947 3.25902863 0.474402355 0.231241772 0.252884227 231.0722448 2.310891572 229.3209479 0.495640356 1.00E-14 14 -2.784626274 KVEQNSRPVS(ph)CSGR ddPTM_HeLa_A485_30min_R1 5 KVEQNSRPVSCSGR 14 2 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 KVEQNSRPVS(0.884)CS(0.116)GR;KVEQNS(0.019)RPVS(0.942)CS(0.04)GR;KVEQNS(0.011)RPVS(0.946)CS(0.043)GR;KVEQNSRPVS(0.998)CS(0.002)GR;KVEQNSRPVS(0.995)CS(0.005)GR ;;;; 260.58 4.49E-42 5695300000 1065150 1179220 996240 971330 1321940 1212500 1432260 1597040 1079270 1250150 TRUE FALSE FALSE 1302088.943 1317119.521 1364790.633 1024391.298 1190323.012 1275984.625 1126245.951 1205363.436 1295869.589 938510.6123 1.387399275 1.403414627 1.454209058 1.091507421 1.268310658 1.359584653 1.200035392 1.284336501 1.380772441 1 19.84001353 -13.60961254 0.177143627 7.87E-16 1.374901429 0.453526388 0.102962732 115.2729854 1.250920761 41.45252656 0.357709726 2.46E-14 13.60961254 1.374901429 KVEQNSRPVS(ph)CSGR ddPTM_HeLa_A486_30min_R1 8 KVEQNSRPVSCSGR 14 2 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 KVEQNS(0.004)RPVS(0.826)CS(0.17)GR;KVEQNS(0.002)RPVS(0.913)CS(0.085)GR;KVEQNSRPVS(0.967)CS(0.032)GR;KVEQNS(0.003)RPVS(0.978)CS(0.019)GR;KVEQNSRPVS(1)CSGR;KVEQNS(0.001)RPVS(0.922)CS(0.076)GR;KVEQNS(0.002)RPVS(0.974)CS(0.024)GR;KVEQNS(0.012)RPVS(0.919)CS(0.069)GR ;;;;;;; 230.48 1.22E-28 5591940000 1573022 1732050 1341140 638453 1820670 1452345 1731317 1768391 1281039 1521203 TRUE FALSE FALSE 1462761.281 1594796.05 1860465.325 1486350.85 1592304.592 1273169.44 1298123.175 1365766.973 1392080.492 1140283.867 1.282804504 1.398595644 1.631580853 1.303491957 1.396410698 1.116537273 1.138421065 1.197742959 1.220819247 1 20.12096159 -6.254365363 20.75526247 1.147295321 1.409573484 0.6237649 0.103718932 38.1823511 112026.8613 0.035222537 0.034328959 5.57E-07 6.254365363 0.262278164 KVES(ph)LQEEIAFLK ddPTM_HeLa_A485_30min_R1 1 KVESLQEEIAFLK 13 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 KVES(1)LQEEIAFLK 130.56 1.21E-05 19938000 121640 116190 85756 165110 131640 142690 171410 173490 94120 220480 TRUE FALSE FALSE 148698.3983 129777.4098 117480.713 174129.5412 118533.4594 150161.0278 134786.8532 130941.3055 113009.0207 165518.3936 0.898379903 0.784066392 0.709774367 1.052025321 0.716134665 0.90721656 0.814331569 0.791098213 0.68275808 1 17.33663202 -9.623290669 9.531396127 1 0.818882421 0.212141043 0.105581587 0 0 0.097846083 0.023731161 2.38E-10 9.623290669 -0.181117579 KVES(ph)LQEEIAFLK ddPTM_HeLa_A486_30min_R1 1 KVESLQEEIAFLK 13 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 KVES(1)LQEEIAFLK 137.44 4.48E-06 15898000 96169 89491 47104 40547 87704 98621 110800 112090 73514 136210 TRUE FALSE FALSE 89428.04972 82399.40724 65343.93029 94395.46513 76703.34651 86454.14372 83076.66808 86569.55391 79886.25271 102102.1294 0.875868606 0.807029273 0.63998597 0.924520043 0.751241399 0.846741828 0.813662443 0.847872169 0.782415148 1 16.63965343 -13.99999996 0.317975502 2.786116295 0.800586573 0.374555451 0.073295008 331.7241976 2.96162626 398.1804249 0.064419356 1.00E-14 13.99999996 -1.985529722 KVESLQEEIAFLK ddPTM_HeLa_A485_30min_R1 2 KVESLQEEIAFLK 13 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 121.31 0.00027629 212136000 322754 308781 257978 364526 394017 388193 491556 521132 343403 539710 FALSE FALSE TRUE 394549.5138 344890.2519 353414.7976 384439.1324 354787.284 408518.1852 386531.045 393323.5599 412320.8322 405170.2296 0.973787028 0.851223083 0.8722625 0.948833612 0.875649932 1.008263084 0.953996658 0.970761253 1.017648391 1 18.62816865 -6.263188408 24.99996799 0.986047881 0.902088202 0.558621284 0.038012371 125.026018 1787069.907 0.012844674 0.011903698 5.46E-07 6.263188408 -0.083959678 KVESLQEEIAFLK ddPTM_HeLa_A486_30min_R1 2 KVESLQEEIAFLK 13 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 134.24 3.86E-05 154300000 821810 770870 496790 372870 1139730 859380 1029320 966190 743920 951260 FALSE FALSE TRUE 764205.3628 709783.4537 689160.3925 868060.2038 996774.4358 753358.4331 771773.249 746209.6288 808403.5846 713058.3043 1.071729139 0.995407317 0.966485333 1.217376193 1.397886302 1.056517298 1.082342418 1.046491744 1.133713162 1 19.44366052 -5.252382998 24.70934164 1.141092464 1.009627266 0.209074568 0.1082579 917.2673456 2502657.408 0.03174525 0.053963871 5.59E-06 5.252382998 -0.131465198 KVESLQEEIAFLK(ac)K ddPTM_HeLa_A486_30min_R1 1 KVESLQEEIAFLKK 14 2 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 1 KVESLQEEIAFLK(1)K 123.07 0.00066713 17529000 30904 33320 36561 18059 33859 36122 52997 46344 27814 84987 FALSE TRUE FALSE 28737.78919 30679.60185 50718.39834 42042.26465 29612.0885 31665.6349 39736.59005 35792.48288 30224.93991 63705.70203 0.451102308 0.481583294 0.79613593 0.65994508 0.464826343 0.497061235 0.623752487 0.561841119 0.474446383 1 15.95913489 -10.45528737 3.251685472 1.007381977 0.562271412 0.619710632 0.104088018 137667759.5 180914708.4 9321570.722 0.027339219 3.51E-11 10.45528737 -0.445110565 KVFS(ph)PVIR ddPTM_HeLa_A485_30min_R1 1 KVFSPVIR 8 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 KVFS(1)PVIR 133.07 0.00030228 800910000 1107100 1404900 1011900 1170700 1389500 1429700 1479300 1840000 1026800 1411000 TRUE FALSE FALSE 1353370.576 1569190.834 1386243.919 1234652.377 1251156.501 1504556.881 1163235.47 1388737.115 1232869.342 1059263.668 1.277652219 1.481397769 1.308686365 1.165576064 1.181156816 1.420379956 1.09815479 1.311040072 1.163892786 1 20.01463031 -14 0.071418729 0.063648593 1.597232753 0.432931362 0.105021227 292.5360001 1.497781119 44.67119516 5.330325139 1.00E-14 14 1.53358416 KVFS(ph)PVIR ddPTM_HeLa_A486_30min_R1 2 KVFSPVIR 8 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 KVFS(1)PVIR;KVFS(1)PVIR ; 113.61 0.00062454 2010670000 3134100 2992600 2029560 945240 3079400 2678300 2912900 3106800 2271600 3095800 TRUE FALSE FALSE 2914415.775 2755455.477 2815459.986 2200566.49 2693152.938 2347878.577 2184061.61 2399449.461 2468504.117 2320591.53 1.255893481 1.187393577 1.213250996 0.948278256 1.160545879 1.01175866 0.941165898 1.033981823 1.063739174 1 21.14606117 -5.245446222 24.52574694 1.026077558 1.215700812 0.690519561 0.060110857 373.1948441 572298.5646 0.016440494 0.028346412 5.68E-06 5.245446222 0.189623254 KVFSDVMEDLYNYINPHNGK ddPTM_HeLa_A485_30min_R1 2 KVFSDVMEDLYNYINPHNGK 20 1 P23921 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit 0 0 ; ; 218.31 7.21E-30 16926100 32578.8 41795.1 32470.3 35420.7 48609 46153.9 59292 65827 37242.5 55120 FALSE FALSE TRUE 39825.84166 46682.67338 44482.41517 37355.64315 43769.31728 48570.44684 46623.77983 49682.82504 44716.72814 41379.59841 0.96245114 1.128156753 1.074984216 0.902755092 1.057751137 1.173777627 1.126733502 1.200659913 1.08064674 1 15.33663202 -6.012633541 24.24760503 1.128020879 1.023043061 0.268682457 0.076087298 520.9209233 999807.4991 0.024397234 0.025607509 9.71E-07 6.012633541 -0.104977818 KVFVGR ddPTM_HeLa_A485_30min_R1 2 KVFVGR 6 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;H0YBN4;G3V162;H0YCC8;A0A087X260;K7EJM5;B1AKP7;A0A087WXQ5;A0A087WYY0;A0A0A0N0M3;A0A087WV68;K7EN94;A0A087WZM1;A0A087WW61;A0A087WZC9;Q13148;Q13148-4;A0A087WXV3;A0A087WX67;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3 P11940;H0Y5F5 PABPC1;TARDBP;PABPC4;TDP43 Polyadenylate-binding protein 1;Polyadenylate-binding protein;TAR DNA-binding protein 43;Polyadenylate-binding protein 4 0 0 ; ; 119.7 0.0069483 49592000 48609 68514 66429 46982 77661 66253 78862 89553 61482 67241 FALSE FALSE TRUE 59421.90435 76526.11631 91003.85144 49548.5077 69928.79816 69721.90463 62012.48946 67589.98634 73820.87345 50479.05618 1.177159576 1.515997368 1.80280414 0.981565652 1.385303202 1.381204601 1.228479575 1.338970881 1.462405977 1 15.62339732 -12.44920572 0.291889568 2.78E-16 1.390357304 0.209195806 0.207666534 150.1508233 3.2564508 91.52152382 0.227185252 3.55E-13 12.44920572 1.390357304 KVFVGR ddPTM_HeLa_A486_30min_R1 2 KVFVGR 6 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;H0YBN4;G3V162;H0YCC8;A0A087X260;K7EJM5;B1AKP7;A0A087WXQ5;A0A087WYY0;A0A0A0N0M3;A0A087WV68;K7EN94;A0A087WZM1;A0A087WW61;A0A087WZC9;Q13148;Q13148-4;A0A087WXV3;A0A087WX67;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3 P11940;H0Y5F5 PABPC1;TARDBP;PABPC4;TDP43 Polyadenylate-binding protein 1;Polyadenylate-binding protein;TAR DNA-binding protein 43;Polyadenylate-binding protein 4 0 0 ; ; 121.87 0.0066467 31942000 37627 42764 34002 13558.2 47822 39728 40033 45120 35584 46083 FALSE FALSE TRUE 34989.54161 39375.2249 47168.48501 31564.17479 41823.71884 34826.76328 30016.31997 34847.16096 38668.44977 34543.51685 1.012911967 1.139873079 1.365480105 0.91375105 1.210754511 1.008199699 0.868942213 1.008790191 1.119412651 1 15.07612735 -6.380672164 7.160574854 0.991742657 1.130101763 0.207422639 0.124235607 0.412630633 22.691802 0.044047034 0.038747747 4.16E-07 6.380672164 0.138359106 KVGLIAAR ddPTM_HeLa_A485_30min_R1 2 KVGLIAAR 8 1 P62917;E9PKU4;E9PP36 P62917 RPL8 60S ribosomal protein L8 0 0 ; ; 133.55 0.00066039 59039000 64179 87418 75198 58802 98434 86965 99374 119658 78541 94807 FALSE FALSE TRUE 78455.39714 97640.77466 103016.8694 62014.20437 88633.56534 91518.35293 78141.93309 90311.68788 94303.45828 71173.35969 1.102314089 1.371872497 1.447407708 0.871312028 1.245319396 1.285851242 1.097909856 1.268897355 1.324982531 1 16.11904972 -11.10849713 2.506961655 0.579710826 1.224593239 0.156486219 0.156002865 5860275.32 2572066.234 14073314.09 0.039176486 7.79E-12 11.10849713 0.644882413 KVGLIAAR ddPTM_HeLa_A486_30min_R1 2 KVGLIAAR 8 1 P62917;E9PKU4;E9PP36 P62917 RPL8 60S ribosomal protein L8 0 0 ; ; 130.27 0.00092192 39656000 48407 48973 41206 13830.5 63441 47089 51371 54229 42339 54373 FALSE FALSE TRUE 45013.91927 45092.20112 57162.06673 32198.10295 55483.63822 41279.63795 38517.43245 41882.24051 46008.97861 40757.64689 1.104428806 1.106349472 1.402486922 0.789989251 1.36130622 1.012807193 0.945035727 1.027592212 1.128842858 1 15.31478314 KVGYTPDWIFLLR ddPTM_HeLa_A485_30min_R1 2 KVGYTPDWIFLLR 13 1 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 ; ; 197.19 1.06E-14 41165000 36218 57929 48471 39021 70208 56793 65939 78639 47384 64383 FALSE FALSE TRUE 44274.56915 64703.29263 66402.43995 41152.61842 63217.845 59766.59366 51850.59398 59352.66195 56893.53417 48333.50298 0.916022353 1.338684114 1.373838763 0.851430496 1.307950823 1.236545873 1.072767145 1.227981799 1.177103472 1 15.56073594 -10.88719852 2.188064535 0.90143344 1.174005114 0.082829719 0.165132419 9220914.23 4399214.422 4691737.731 0.043116764 1.30E-11 10.88719852 0.272571674 KVGYTPDWIFLLR ddPTM_HeLa_A486_30min_R1 2 KVGYTPDWIFLLR 13 1 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 ; ; 111.83 0.0010258 37273000 51881 57122 48291 24704 76327 55979 65133 69604 42122 64557 FALSE FALSE TRUE 48244.40981 52595.44469 66990.56848 57512.16047 66753.35594 49072.88013 48836.03449 53756.68864 45773.16888 48391.507 0.996960268 1.086873461 1.384345573 1.188476326 1.379443627 1.014080428 1.009186064 1.110870315 0.94589261 1 15.56246625 -6.307406801 24.83867652 1.022508946 1.209333006 0.403945293 0.115988596 444.0008129 239916.2235 0.042417054 0.037408452 4.93E-07 6.307406801 0.18682406 KVIQYLAYVASSHK ddPTM_HeLa_A485_30min_R1 4 KVIQYLAYVASSHK 14 1 P35579;P35579-2;Q5BKV1 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 206.2 5.23E-16 220422600 452567 688464 522395 288328.2 752334 572132 697786 814678 420662 557201.1 FALSE FALSE TRUE 553238.9678 768973.876 715650.6492 304078.8395 677428.9854 602087.9468 548698.3207 614876.9431 505085.0049 418301.1203 1.322585432 1.838326121 1.710850424 0.726937665 1.619476861 1.439364892 1.311730459 1.469938552 1.207467493 1 18.67418234 -12.00622661 0.080137509 1.09E-10 1.88466208 0.191497864 0.283594542 278.8178571 2.403864296 61.32374057 11.75249326 9.86E-13 12.00622661 1.88466208 KVIQYLAYVASSHK ddPTM_HeLa_A486_30min_R1 2 KVIQYLAYVASSHK 14 1 P35579;P35579-2;Q5BKV1 P35579 MYH9 Myosin-9 0 0 ; ; 171.76 2.71E-08 189375000 466060 374600 307980 113731 421200 343760 468120 381560 330670 363950 FALSE FALSE TRUE 433391.6007 344915.3317 427238.104 264771.5156 368369.1685 301350.3863 350991.4247 294687.1174 359332.7418 272814.5511 1.588594153 1.264284952 1.56603855 0.970518305 1.350254842 1.104597922 1.286556833 1.080173753 1.317131877 1 18.05756107 -1 0.390140272 1.146126197 7.434496583 0.393811048 0.159777729 71.43687346 0.963602679 0.109575393 342.4744375 0.1 1 6.288370386 KVIS(ph)PPPFAPSPTLPPTFHPEEFLDEDLKVAGK ddPTM_HeLa_A485_30min_R1 1 KVISPPPFAPSPTLPPTFHPEEFLDEDLKVAGK 33 2 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 0 KVIS(1)PPPFAPSPTLPPTFHPEEFLDEDLKVAGK 90.699 7.36E-05 138640000 45313 44047 20586 61125 60190 81838 119760 136650 39253 97724 TRUE FALSE FALSE 55392.72052 49197.91349 28201.61805 64464.10397 54197.27226 86122.91113 94172.29765 103136.3732 47130.71705 73363.20528 0.755047715 0.67060747 0.384410931 0.87869803 0.738752786 1.173925141 1.283644809 1.405832431 0.642429906 1 16.16276905 -6.081508867 2.187578214 1.139172025 0.645569338 0.455039262 0.223899578 0.26800503 2.539372292 0.082438947 0.085493308 8.29E-07 6.081508867 -0.493602687 KVIS(ph)PPPFAPSPTLPPTFHPEEFLDEDLKVAGK ddPTM_HeLa_A486_30min_R1 1 KVISPPPFAPSPTLPPTFHPEEFLDEDLKVAGK 33 2 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 0 KVIS(1)PPPFAPSPTLPPTFHPEEFLDEDLKVAGK 176 1.87E-15 147320000 108820 78735 31275 57855 92154 111170 164600 152840 59885 170910 TRUE FALSE FALSE 101192.2799 72495.75185 43385.51757 134689.3638 80595.18602 97454.97569 123415.339 118041.6685 65075.88002 128113.0236 0.789867237 0.565873397 0.338650329 1.051332332 0.629094403 0.760695306 0.963331718 0.921386953 0.507956789 1 16.96705762 -5.261294259 24.99998678 0.823995865 0.564904641 0.298129501 0.188476327 16.99050546 2926748.566 0.051495755 0.082370468 5.48E-06 5.261294259 -0.259091224 KVLCLAVAVGHVK ddPTM_HeLa_A486_30min_R1 1 KVLCLAVAVGHVK 13 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 53.034 0.03296 7571500 25453 21719 33912 8781.1 42897 15065 18690 21124 19159 20205 FALSE FALSE TRUE 23668.87614 19997.90734 47043.63459 20442.84457 37516.45826 13206.43347 14013.56432 16314.52633 20819.71755 15145.53649 1.562762478 1.320382897 3.106105527 1.349760346 2.477063674 0.871968681 0.925260345 1.077183786 1.374643781 1 13.88660506 -6.275438575 24.77721587 1.046850822 1.956915207 0.437968151 0.517328841 691.2141331 1223378.208 0.178522917 0.158233582 5.30E-07 6.275438575 0.910064385 KVLLYLLSPR ddPTM_HeLa_A485_30min_R1 1 KVLLYLLSPR 10 1 Q15397 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 0 0 120.96 0.00033987 0 21764 30430 28834 20397 32147 24474 31932 31928 18321 32581 FALSE FALSE TRUE 26605.32672 33988.52379 39500.89648 21511.23646 28946.33181 25755.4208 25109.46734 24097.60794 21997.85665 24459.15631 1.087745071 1.389603278 1.614973795 0.879475816 1.183455858 1.052997105 1.026587631 0.985218281 0.899371032 1 14.57808702 -5.273085428 24.99992974 1.013732333 1.366656982 0.572950961 0.142336822 526.2374381 1129643.724 0.040550856 0.060722116 5.33E-06 5.273085428 0.352924649 KVLLYLLSPR ddPTM_HeLa_A486_30min_R1 2 KVLLYLLSPR 10 1 Q15397 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 0 0 ; ; 147.72 4.31E-06 0 55357 55413 46247 19211.3 64178 49486 59068 60827 53903 63773 FALSE FALSE TRUE 51476.76016 51021.87207 64155.07694 44724.87729 56128.1968 43380.92046 44288.56164 46978.01994 58575.35544 47803.82571 1.076833484 1.067317758 1.342049009 0.935592008 1.174136086 0.907478007 0.926464796 0.982725111 1.225327776 1 15.54483846 -5.299085575 24.99510147 1.018582316 1.152592218 0.220428551 0.120496453 863.0294489 573004.6312 0.033989921 0.050416373 5.02E-06 5.299085575 0.134009902 KVLQLLR ddPTM_HeLa_A486_30min_R1 1 KVLQLLR 7 1 A8MUD9;P18124;C9JZ88;C9JIJ5 A8MUD9 RPL7 60S ribosomal protein L7 0 0 110.35 0.0020886 0 26135 23355 19855 7195.4 28448 19726 25020 23332 18919 24057 FALSE FALSE TRUE 24303.07146 21504.26474 27543.38774 16751.25484 24879.78657 17292.40668 18759.73137 18019.81293 20558.91415 18032.97062 1.34770205 1.192497077 1.527390485 0.928923758 1.379683198 0.958932782 1.040301776 0.999270354 1.140073624 1 14.13834945 -5.732351793 0.967558259 1.032566212 1.329621411 0.358197876 0.155917485 0.620859793 1.243770622 0.069236181 0.113042378 1.85E-06 5.732351793 0.297055199 KVLS(ph)DS(ph)EDEEKDADVPGTSTR ddPTM_HeLa_A485_30min_R1 1 KVLSDSEDEEKDADVPGTSTR 21 2 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 2 0 KVLS(1)DS(1)EDEEKDADVPGTSTR 79.558 0.011974 725990000 368240 239000 136570 861190 419000 339480 691680 606860 228110 1273300 TRUE FALSE FALSE 450153.7176 266948.971 187092.9262 908234.6291 377282.8888 357254.6479 543896.9175 458026.6335 273889.5847 955889.7433 0.470926402 0.279267534 0.195726471 0.950145804 0.394692894 0.373740434 0.568995453 0.47916262 0.286528427 1 19.8664847 -10.42555716 3.386109474 1.006219159 0.448214392 0.412939981 0.198706644 234903538.9 326407939.4 14167929.92 0.051398139 3.75E-11 10.42555716 -0.558004767 KVLS(ph)DS(ph)EDEEKDADVPGTSTR ddPTM_HeLa_A486_30min_R1 1 KVLSDSEDEEKDADVPGTSTR 21 2 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 2 0 KVLS(1)DS(1)EDEEKDADVPGTSTR 89.039 0.0043926 401310000 795490 680390 247930 925120 587590 1027200 1557100 1286100 584990 2181800 TRUE FALSE FALSE 739730.2589 626473.4185 343935.1358 2153726.113 513888.9831 900474.5078 1167497.111 993283.1054 635697.4042 1635463.079 0.452306303 0.383055678 0.210298319 1.316890696 0.314216193 0.550592991 0.713863325 0.607340586 0.388695662 1 20.64126776 -11.6803158 1.921098627 9.999749838 0.556118687 0.17652088 0.292092232 10515943.2 317720.5644 414218109.2 0.072417216 2.09E-12 11.6803158 -9.443631151 KVMDS(ph)DEDDDY ddPTM_HeLa_A485_30min_R1 6 KVMDSDEDDDY 11 1 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY ;;;;; 89.433 0.0077027 50898700000 21855150 20077970 16246660 28765540 27317210 22303890 34930160 35352910 19182540 36210410 TRUE FALSE FALSE 26716752.72 22425913.94 22256975.61 30336928.61 24597412.66 23471687.19 27467045.96 26682553.39 23032299.83 27183821.19 0.982818145 0.824972831 0.818758167 1.11599206 0.904854858 0.86344326 1.010418873 0.981560069 0.847279699 1 24.69624493 -1.000172238 0.011217404 1.746031709 1.59E-06 0.037659551 0.09122023 35638.20996 30.95775392 2038.78069 2841.517406 0.099960349 1.000172238 -1.746030115 KVMDS(ph)DEDDDY ddPTM_HeLa_A486_30min_R1 5 KVMDSDEDDDY 11 1 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(1)DEDDDY;KVMDS(0.999)DEDDDY(0.001);KVMDS(0.655)DEDDDY(0.345) ;;;; 90.975 0.0071234 71384530000 29203100 30295600 17285160 13879680 27653300 31772900 39785000 36503800 21631100 38402400 TRUE FALSE FALSE 27156113.49 27894866.32 23978436.86 32312596.48 24184765.26 27853082.64 29830372.2 28192681.61 23506101.16 28786189.08 0.943372998 0.969036445 0.832984067 1.122503447 0.840151685 0.967584926 1.036273753 0.979382215 0.816575654 1 24.77887347 KVMDSDEDDDY(ph) ddPTM_HeLa_A485_30min_R1 1 KVMDSDEDDDY 11 1 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 KVMDSDEDDDY(1) 117.89 0.00012408 434960000 744040 738890 561040 973110 1018800 834200 1324600 1305100 733630 1299400 TRUE FALSE FALSE 909549.1311 825296.758 768592.0428 1026268.535 917364.6948 877877.4221 1041588.389 985022.1787 880862.8117 975483.4937 0.932408531 0.84603867 0.787908814 1.052061405 0.94042052 0.899940827 1.067766288 1.009778418 0.903001248 1 19.89575794 -5.260128452 24.99985396 0.980700507 0.854510673 0.464618487 0.062167733 107.7223607 2054283.165 0.017457588 0.028222684 5.49E-06 5.260128452 -0.126189834 KVMDSDEDDDY(ph) ddPTM_HeLa_A486_30min_R1 1 KVMDSDEDDDY 11 1 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 KVMDSDEDDDY(1) 118.18 0.0001189 424090000 1001500 935470 563020 499180 1002500 1077000 1382000 1290700 851710 1470500 TRUE FALSE FALSE 931300.0218 861339.9503 781036.4222 1162116.267 876757.1021 944130.6901 1036208.983 996835.7858 925536.9086 1102277.229 0.844887291 0.781418619 0.708566232 1.054286741 0.795405257 0.856527438 0.940062042 0.904342174 0.839658921 1 20.07205568 -1.000000304 0.046477167 1.265340411 0.169016229 0.242247842 0.086214092 824.6786754 2.909219755 17.05666669 66.75071977 0.09999993 1.000000304 -1.096324183 KVNEEKDGPIS(ph)PK ddPTM_HeLa_A485_30min_R1 1 KVNEEKDGPISPK 13 2 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 KVNEEKDGPIS(1)PK 88.283 0.00078756 1170500000 1015200 625660 294750 2308000 1286000 1180500 2378400 2454900 812230 3791700 TRUE FALSE FALSE 1241027.738 698825.4945 403790.2906 2434080.196 1157961.325 1242309.155 1870235.41 1852831.926 975237.1108 2846498.971 0.435983905 0.245503512 0.141855063 0.855113675 0.406801947 0.436434078 0.657030067 0.650916071 0.342609332 1 21.44075715 -14 0.099206069 2.631110427 0.112356475 0.423708016 0.194316675 186.4099787 1.258211089 63.59010092 3.426713614 1.00E-14 14 -2.518753952 KVNEEKDGPIS(ph)PK ddPTM_HeLa_A486_30min_R1 1 KVNEEKDGPISPK 13 2 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 KVNEEKDGPIS(1)PK 120.9 3.58E-05 1237300000 1606700 1313300 430310 1920200 1249300 2321300 3505400 2883300 1087800 4416800 TRUE FALSE FALSE 1494078.627 1209229.325 596937.5561 4470322.642 1092601.145 2034921.607 2628311.844 2226835.532 1182091.38 3310804.531 0.451273584 0.365237305 0.180299849 1.350222461 0.330010768 0.614630549 0.79385896 0.672596498 0.357040523 1 21.65875041 KVNQQPNTSDKKSS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 KVNQQPNTSDKKSSPQK 17 3 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 KVNQQPNTSDKKS(0.248)S(0.752)PQK;KVNQQPNTSDKKS(0.126)S(0.874)PQK ; 128.05 1.52E-05 2174510000 671220 493360 205004 955650 659590 790800 1469910 1293830 512520 1463330 TRUE FALSE FALSE 820530.5733 551054.1603 280843.5105 1007854.74 593918.9036 832205.0652 1155851.72 976516.1639 615378.0629 1098548.762 0.746922305 0.501620119 0.255649563 0.91744197 0.540639546 0.7575495 1.052162417 0.888914719 0.560173644 1 20.06716748 -6.005989083 1.210898837 0.862210853 0.540094374 0.285751786 0.203423041 0.598701212 1.83820751 0.092989818 0.105857402 9.86E-07 6.005989083 -0.322116478 KVNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_HeLa_A485_30min_R1 4 KVNVTVDYIRPASPATETVPAFSER 25 2 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 KVNVTVDYIRPAS(1)PATETVPAFSER;KVNVTVDYIRPAS(0.985)PAT(0.012)ET(0.003)VPAFSER;KVNVTVDYIRPAS(0.999)PAT(0.001)ETVPAFSER;KVNVTVDYIRPAS(1)PATETVPAFSER ;;; 205.7 6.97E-29 2762910000 919111 1236850 1236147 905055 1453060 1330284 1456299 1603130 1146031 1329129 TRUE FALSE FALSE 1123564.071 1381488.848 1693449.216 954495.8629 1308388.244 1399935.613 1145148.822 1209959.854 1376028.91 997801.6011 1.126039555 1.384532603 1.697180295 0.956598849 1.311270941 1.403020011 1.147671862 1.212625689 1.379060635 1 19.92839346 -13.23201616 0.220004066 3.41E-10 1.332417726 0.167083163 0.190635553 192.8977588 2.623943509 86.05884817 0.374483259 5.86E-14 13.23201616 1.332417725 KVNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_HeLa_A486_30min_R1 3 KVNVTVDYIRPASPATETVPAFSER 25 2 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 KVNVTVDYIRPAS(1)PATETVPAFSER;KVNVTVDYIRPAS(1)PATETVPAFSER;KVNVTVDYIRPAS(0.999)PAT(0.001)ETVPAFSER ;; 223.42 1.57E-38 1715490000 1325130 1337590 1161870 518628 1661250 1326180 1464500 1567510 1204950 1504150 TRUE FALSE FALSE 1232245.23 1231594.497 1611777.18 1207392.194 1452880.534 1162569.395 1098066.61 1210622.192 1309396.036 1127501.05 1.092899408 1.092322262 1.429512798 1.070856825 1.28858464 1.031102717 0.973894091 1.073721565 1.16132578 1 20.10469735 -6.281587835 24.77114881 1.047984243 1.195289985 0.306889356 0.110326587 945.7280208 1162704.128 0.038746254 0.034215065 5.23E-07 6.281587835 0.147305742 KVNVTVDYIRPASPATETVPAFSER ddPTM_HeLa_A485_30min_R1 2 KVNVTVDYIRPASPATETVPAFSER 25 2 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ; ; 115.11 6.10E-08 34626000 23851 23685 29508 31380 42175 31353 38043 42875 28023 49135 FALSE FALSE TRUE 29156.57267 26454.75472 40424.23713 33094.20994 37975.90891 32994.5946 29914.80227 32359.83902 33646.95906 36886.54876 0.790439161 0.717192462 1.095907275 0.897189112 1.029532721 0.894488525 0.810994882 0.877280204 0.912174226 1 15.17080719 -4.729466477 24.99986724 0.930792466 0.753815587 0.45868064 0.080307959 184.1946457 144020.762 0.020917766 0.05533309 1.86E-05 4.729466477 -0.176976878 KVPCS(ph)PDFQR ddPTM_HeLa_A485_30min_R1 2 KVPCSPDFQR 10 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 KVPCS(1)PDFQR;KVPCS(1)PDFQR ; 113.99 0.00032747 633640000 935290 1088580 990470 1114070 1373190 1137220 1467290 1481570 1076540 1392430 TRUE FALSE FALSE 1143342.034 1215879.962 1356886.07 1174928.823 1236470.382 1196763.081 1153791.505 1118212.634 1292591.703 1045322.827 1.093769317 1.163162164 1.298054568 1.123986574 1.182859831 1.144874148 1.103765722 1.069729471 1.236547859 1 19.99551713 -6.538224057 3.025316053 1.108434038 1.176082511 0.163155835 0.073705471 0.513789711 9.661434666 0.029501993 0.023166221 2.90E-07 6.538224057 0.067648474 KVPCS(ph)PDFQR ddPTM_HeLa_A486_30min_R1 2 KVPCSPDFQR 10 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 KVPCS(1)PDFQR;KVPCS(1)PDFQR ; 121.28 0.00012235 844360000 982150 1173380 836310 393010 1247680 1097160 1238090 1257780 924770 1303430 TRUE FALSE FALSE 913306.3568 1080397.095 1160151.629 914947.1416 1091184.34 961803.5543 928306.7868 971410.9511 1004929.808 977042.6441 0.934766115 1.105782948 1.187411457 0.936445453 1.116823658 0.984402841 0.950119007 0.99423598 1.028542423 1 19.89806201 -6.296703238 23.7645871 0.988515951 1.059629385 0.157115799 0.074667716 608.8137349 410281.587 0.026185523 0.023094817 5.05E-07 6.296703238 0.071113433 KVPLLHNFHSFLYQPDWR ddPTM_HeLa_A485_30min_R1 2 KVPLLHNFHSFLYQPDWR 18 1 E9PS69;E9PJG4;E9PNM1;A0A1W2PQ47;P37268-3;P37268-2;P37268-5;P37268 E9PS69 FDFT1 Squalene synthase 0 0 ; ; 165.45 1.29E-14 45120000 52124 81870 71014 47230 62945 72055 98668 106899 45298 85962 FALSE FALSE TRUE 63718.80397 91443.98433 97285.03374 49810.05531 56677.97479 75827.68838 77586.77576 80681.85264 54388.8931 64533.25541 0.987379353 1.4170056 1.507517839 0.771850963 0.878275463 1.175017251 1.202275869 1.250236829 0.842804113 1 15.97775518 -5.252263962 24.99434332 1.036132783 1.315271381 0.308271504 0.195192249 892.5597105 2431377.115 0.055928639 0.095097971 5.59E-06 5.252263962 0.279138597 KVPLLHNFHSFLYQPDWR ddPTM_HeLa_A486_30min_R1 1 KVPLLHNFHSFLYQPDWR 18 1 E9PS69;E9PJG4;E9PNM1;A0A1W2PQ47;P37268-3;P37268-2;P37268-5;P37268 E9PS69 FDFT1 Squalene synthase 0 0 104.44 7.27E-05 17391000 15325 21377 23617 5736.4 30373 20405 24053 22333 24207 24032 FALSE FALSE TRUE 14250.79664 19683.00867 32762.13489 13354.6291 26563.33512 17887.63856 18034.68499 17248.26343 26305.28225 18014.23078 0.791085493 1.092636644 1.818680758 0.741337738 1.474575043 0.992972655 1.001135448 0.957479875 1.460250098 1 14.13684943 KVPRVS(ph)LER ddPTM_HeLa_A485_30min_R1 4 KVPRVSLER 9 2 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 KVPRVS(1)LER;KVPRVS(1)LER;KVPRVS(1)LER;KVPRVS(1)LER ;;; 147.26 6.26E-05 1900240000 2051830 3623730 2624670 1641790 3169740 3514500 3701040 4806000 2459910 2252830 TRUE FALSE FALSE 2508252.505 4047493.701 3595644.655 1731476.83 2854149.556 3698513.786 2910282.569 3627320.964 2953591.373 1691240.941 1.483084074 2.39320939 2.126039269 1.023790749 1.687606707 2.186863915 1.720797137 2.144768895 1.746404845 1 20.68965078 -10.83484806 1.697259388 0.555566489 1.847671678 0.302556332 0.379748944 193330.2939 73687.7766 348298.2007 0.10565562 1.46E-11 10.83484806 1.292105189 KVPRVS(ph)LER ddPTM_HeLa_A486_30min_R1 4 KVPRVSLER 9 2 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 KVPRVS(1)LER;KVPRVS(1)LER;KVPRVS(1)LER;KVPRVS(1)LER ;;; 115.33 0.00048571 1743650000 2049220 1887510 1624057 677128 2425190 1687349 2221354 2279200 1506403 2485230 TRUE FALSE FALSE 1905580.26 1737936.833 2252935.364 1576388.204 2121000.056 1479181.036 1665547.734 1760275.915 1636979.225 1862912.232 1.022903939 0.932913963 1.209362055 0.846195638 1.138539981 0.794015419 0.894055933 0.944905447 0.878720531 1 20.82912827 -6.264156803 24.99788396 0.89837834 1.024345463 0.267021374 0.105432047 334.9338291 3081080.111 0.034234374 0.031545062 5.44E-07 6.264156803 0.125967123 KVPS(ph)FTFTPTVTYQR ddPTM_HeLa_A485_30min_R1 2 KVPSFTFTPTVTYQR 15 1 A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 KVPS(0.997)FT(0.003)FTPTVTYQR;KVPS(0.904)FT(0.096)FTPTVTYQR ; 164.02 3.51E-12 5822700000 2512180 2194830 1194280 3247720 1441910 2487350 3392600 3333170 1972320 6367400 TRUE FALSE FALSE 3071005.774 2451496.276 1636093.87 3425134.72 1298348.378 2617583.8 2667743.295 2515704.831 2368146.533 4780124.363 0.642453112 0.512851987 0.342270147 0.716536738 0.271613933 0.547597427 0.558090772 0.526284389 0.495415256 1 22.18861672 KVPS(ph)FTFTPTVTYQR ddPTM_HeLa_A486_30min_R1 2 KVPSFTFTPTVTYQR 15 1 A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 KVPS(0.762)FT(0.238)FTPTVTYQR;KVPS(0.961)FT(0.039)FTPTVTYQR ; 195.55 4.95E-19 5430200000 1009860 978270 625540 390670 1237900 1308700 1278960 1165280 1175940 2056560 TRUE FALSE FALSE 939074.0289 900748.3224 867765.8405 909499.5034 1082631.039 1147245.9 958950.6805 899971.1819 1277871.426 1541583.99 0.609161768 0.584300517 0.562905327 0.589977263 0.702284823 0.744199413 0.622055423 0.583796399 0.828934028 1 20.55598206 -14 0.15343042 2.345299619 0.533591289 0.759768541 0.065342006 67.46572645 0.60729676 27.39474668 0.328022754 1.00E-14 14 -1.81170833 KVQAEDEANGLQTT(ph)PASR ddPTM_HeLa_A486_30min_R1 1 KVQAEDEANGLQTTPASR 18 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 KVQAEDEANGLQT(0.017)T(0.491)PAS(0.491)R 117.43 4.74E-05 269330000 164770 209160 195860 99643 229260 206180 272730 285480 121450 188190 TRUE FALSE FALSE 153220.4739 192585.3999 271702.2373 231973.9397 200504.073 180743.6079 204490.0694 220482.436 131977.3838 141065.9991 1.086161618 1.365214872 1.926064672 1.644435521 1.421349399 1.281269824 1.44960565 1.562973625 0.935571893 1 17.10601077 -7.765148859 24.99886875 0.967785635 1.476638866 0.471424784 0.211308576 90.7880003 611793.1888 0.192393813 0.057172928 1.72E-08 7.765148859 0.508853231 KVQAEDEANGLQTTPAS(ph)R ddPTM_HeLa_A485_30min_R1 2 KVQAEDEANGLQTTPASR 18 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 KVQAEDEANGLQTT(0.002)PAS(0.998)R;KVQAEDEANGLQTT(0.001)PAS(0.999)R ; 194.52 9.04E-19 1083580000 642240 525130 455820 533340 910270 481420 947930 1043320 429790 622900 TRUE FALSE FALSE 785104.0723 586539.3855 624446.7863 562475.0137 819640.3226 506626.4068 745397.0116 787444.1341 516044.9107 467622.4936 1.67892709 1.254301052 1.33536516 1.202839943 1.752782071 1.083408976 1.594014449 1.683931258 1.103550231 1 18.8349848 -7.927503434 7.12408373 1.001075862 1.431961381 0.351754708 0.216526384 0.213768273 16.10097403 0.201660837 0.052219211 1.18E-08 7.927503434 0.430885519 KVQAEDEANGLQTTPAS(ph)R ddPTM_HeLa_A486_30min_R1 1 KVQAEDEANGLQTTPASR 18 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 KVQAEDEANGLQTTPAS(1)R 184.53 1.94E-19 0 373450 497920 410480 263080 488010 523780 631660 693230 270140 408110 TRUE FALSE FALSE 347273.0835 458463.0058 569428.849 612463.5353 426799.2353 459161.349 473611.987 535396.6621 293555.9527 305916.5996 1.135188754 1.498653575 1.861385913 2.002060483 1.395148991 1.500936365 1.548173546 1.750139295 0.959594716 1 18.22277887 -7.769112729 24.99178997 0.979796847 1.596047327 0.524405914 0.230951587 154.4996907 503178.4808 0.220088368 0.061128383 1.70E-08 7.769112729 0.61625048 KVQDGLSDIAEK(ac)FLK ddPTM_HeLa_A485_30min_R1 1 KVQDGLSDIAEKFLK 15 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 0 1 KVQDGLSDIAEK(1)FLK 93.153 0.021243 19703000 7428 8739.2 6666.2 6340.8 9160.6 9396.6 12707 16312 7994.4 14355 FALSE TRUE FALSE 9080.332974 9761.173419 9132.304784 6687.181848 8248.538499 9888.591446 9992.045643 12311.45642 9598.802751 10776.56268 0.842600117 0.905778002 0.847422787 0.62053013 0.765414608 0.917601626 0.927201552 1.142428879 0.890710984 1 13.39560947 -6.61707392 2.256785003 1.008739265 0.797621725 0.491753661 0.093020439 0.269287405 2.78918717 0.044169409 0.032055683 2.42E-07 6.61707392 -0.211117539 KVQDGLSDIAEK(ac)FLK ddPTM_HeLa_A486_30min_R1 2 KVQDGLSDIAEKFLK 15 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 0 1 ; KVQDGLSDIAEK(1)FLK;KVQDGLSDIAEK(1)FLK 130.56 0.00015173 44985000 53051 48817 29486.3 22249.4 56059 51043 59029 65657 39698 69030 FALSE TRUE FALSE 49332.39886 44948.56313 40904.18503 51797.72762 49027.55749 44745.83363 44259.31985 50708.33438 43139.0546 51744.43869 0.953385525 0.868664619 0.790503986 1.001029848 0.947494238 0.86474672 0.855344477 0.979976509 0.833694513 1 15.65911619 -11.46517143 2.192688943 2.049660309 0.899772993 0.17704091 0.065047463 5236546.44 439384.3768 27398604.83 0.016966125 3.43E-12 11.46517143 -1.149887316 KVQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_A485_30min_R1 2 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KVQIPVSRPDPEPVS(0.996)DNEEDS(0.886)Y(0.118)DEEIHDPR;KVQIPVSRPDPEPVS(1)DNEEDS(0.559)Y(0.441)DEEIHDPR ; 142.27 1.81E-09 2889400000 1104100 1425180 1116090 1172340 1751710 1520170 1886900 2204400 1362700 1771670 TRUE FALSE FALSE 1349703.236 1591842.404 1528978.135 1236381.966 1577303.602 1599763.751 1483748.4 1663767.444 1636181.391 1330025.274 1.014795179 1.196851244 1.149585775 0.929592835 1.185920022 1.202807031 1.115579102 1.250929194 1.230188194 1 20.34302223 KVQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_A486_30min_R1 1 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KVQIPVSRPDPEPVS(1)DNEEDS(0.62)Y(0.38)DEEIHDPR 160.73 2.79E-14 945700000 246610 301780 210090 115980 346350 329850 349390 353860 274320 362920 TRUE FALSE FALSE 229323.9125 277865.8537 291442.4744 270007.3013 302907.5534 289156.4607 261968.9265 273293.8027 298098.2785 272042.4698 0.842970999 1.021406157 1.071312412 0.992518931 1.113456857 1.062909262 0.962970696 1.00459977 1.09577846 1 18.05347237 -4.26584911 4.460984774 1.037925591 0.830374432 0.61639801 0.045863226 0.128500171 6.450526888 0.011625279 0.083726136 5.42E-05 4.26584911 -0.207551159 KVQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_HeLa_A485_30min_R1 2 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KVQIPVSRPDPEPVS(0.997)DNEEDS(0.407)Y(0.596)DEEIHDPR;KVQIPVSRPDPEPVS(1)DNEEDS(0.346)Y(0.654)DEEIHDPR ; 143.16 6.86E-08 1880430000 541530 623350 568600 625780 899580 765890 857390 1063880 726760 929720 TRUE FALSE FALSE 661991.4802 696245.3601 778948.8014 659964.7768 810014.6566 805990.8161 674201.6223 802961.7619 872614.0658 697957.9142 0.948469051 0.997546336 1.116039786 0.945565289 1.160549426 1.154784264 0.965963146 1.150444383 1.250238801 1 19.41278052 -3.257728072 0.468418303 1.115668998 0.581766068 0.228446791 0.091148998 17.29998538 1.43265623 0.057467596 6.231779986 0.000552423 3.257728072 -0.533902931 KVQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_HeLa_A486_30min_R1 1 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 KVQIPVSRPDPEPVS(1)DNEEDS(0.272)Y(0.728)DEEIHDPR 129.63 7.83E-05 1753200000 319620 335940 259870 117740 353220 271270 391090 417420 283100 328660 TRUE FALSE FALSE 297216.2885 309318.8909 360498.6236 274104.6703 308915.854 237803.4655 293235.1455 322382.5782 307639.3359 246361.3968 1.206423946 1.255549347 1.463291848 1.112612097 1.253913389 0.965262694 1.190264178 1.308575866 1.248731903 1 17.91041669 -5.297895721 24.93170077 1.164837349 1.303134677 0.255127697 0.119698237 851.63474 582412.6433 0.034446388 0.051094014 5.04E-06 5.297895721 0.138297328 KVQIPVSRPDPEPVS(ph)DNEEDSYDEEIHDPR ddPTM_HeLa_A485_30min_R1 1 KVQIPVSRPDPEPVSDNEEDSYDEEIHDPR 30 2 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 KVQIPVSRPDPEPVS(1)DNEEDSYDEEIHDPR 169.75 8.23E-15 401910000 159430 204620 185200 164830 245160 232860 271400 310960 212300 244760 TRUE FALSE FALSE 194894.6535 228548.529 253713.1868 173834.2455 220751.0096 245052.1895 213413.1729 234696.5724 254906.6627 183745.8365 1.060675209 1.243829702 1.380783324 0.946058147 1.201393261 1.333647577 1.16145855 1.2772892 1.387278578 1 17.48735203 -6.004867791 24.96326479 1.247378358 1.1666315 0.048902839 0.144286964 658.8958611 3379003.436 0.044807738 0.049521967 9.89E-07 6.004867791 -0.080746859 KVQVAALQAS(ph)PPLDQDDR ddPTM_HeLa_A485_30min_R1 8 KVQVAALQASPPLDQDDR 18 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR ;;;;;;; 211.68 5.19E-26 15231110000 6090748 7336609 6243988 6753343 8517250 7549300 8317520 8648640 6803531 9290170 TRUE FALSE FALSE 7445613.88 8194561.603 8553898.995 7122261.028 7669242.684 7944569.675 6540413.904 6527547.479 8168937.266 6974301.592 1.067578421 1.174965191 1.226488256 1.021214947 1.099643109 1.139120465 0.937787651 0.935942817 1.171291083 1 22.73361732 -6.154582037 1.06768638 1.015123441 1.142668429 0.230209158 0.084889007 0.716832072 1.724401383 0.045157111 0.045283666 7.01E-07 6.154582037 0.127544989 KVQVAALQAS(ph)PPLDQDDR ddPTM_HeLa_A486_30min_R1 5 KVQVAALQASPPLDQDDR 18 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR ;;;; 197.15 2.52E-25 12653360000 7360840 7905160 5954850 2673940 8140480 7377300 8499790 8479210 6548430 8610960 TRUE FALSE FALSE 6844883.127 7278726.332 8260727.396 6225067.453 7119425.091 6467163.733 6373052.64 6548678.983 7116053.185 6454719.568 1.060446245 1.127659576 1.279796482 0.964421055 1.102979768 1.001927917 0.987347719 1.0145567 1.102457374 1 22.62192299 -5.281051141 24.998955 1.026161822 1.153136674 0.452116286 0.066128806 729.189709 929490.6034 0.018579814 0.027601732 5.24E-06 5.281051141 0.126974852 KVQVAALQAS(ph)PPLDQDDRAFEVMDEFDGR ddPTM_HeLa_A485_30min_R1 3 KVQVAALQASPPLDQDDRAFEVMDEFDGR 29 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR;KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR;KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR ;; 179.85 1.04E-20 466890000 94519 218629 171581 80708 338784 344290 429950 857960 193630 154790 TRUE FALSE FALSE 115544.4255 244195.7597 235055.952 85116.87368 305053.4754 362316.492 338087.6701 647543.9648 232489.7649 116203.7017 0.994326547 2.101445618 2.022792291 0.732479882 2.625161427 3.117942774 2.909439761 5.572489992 2.000708768 1 16.8262965 -5.95501384 5.64734337 3.174150529 1.549882496 0.249443562 1.159498175 0.235995898 17.86195033 0.355019197 0.400011415 1.11E-06 5.95501384 -1.624268033 KVQVAALQAS(ph)PPLDQDDRAFEVMDEFDGR ddPTM_HeLa_A486_30min_R1 3 KVQVAALQASPPLDQDDRAFEVMDEFDGR 29 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR;KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR;KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR ;; 148.77 1.15E-09 317740000 152904 125212 160856 95769 407260 154965 282260 298504 105236 199779 TRUE FALSE FALSE 142186.2192 115289.7451 223143.7511 222955.0719 356177.6533 135846.9939 211635.5626 230541.1555 114357.9412 149753.0381 0.94947135 0.769865818 1.490078291 1.488818356 2.378433572 0.907140153 1.413230511 1.539475649 0.763643547 1 17.19222575 -7.764693146 24.99189753 0.881821619 1.375236936 0.168555954 0.430779322 163.218868 1253567.798 0.379555504 0.113867398 1.72E-08 7.764693146 0.493415316 KVS(ph)FLHR ddPTM_HeLa_A486_30min_R1 2 KVSFLHR 7 1 Q9HCE6-5;Q9HCE6-3;Q9HCE6-2;Q9HCE6 Q9HCE6-5 ARHGEF10L Rho guanine nucleotide exchange factor 10-like protein 1 0 KVS(1)FLHR;KVS(1)FLHR ; 82.261 0.0063501 222280000 518820 571740 360440 227048 488280 540260 540590 643510 502010 613660 TRUE FALSE FALSE 482453.3972 526433.2402 500012.0209 528579.2184 427035.3694 473608.2142 405328.6642 496996.8207 545524.631 459995.5417 1.048821898 1.144431179 1.086993189 1.149096394 0.928346757 1.029593053 0.88115781 1.080438343 1.185934605 1 18.81126035 -5.742404364 24.99483961 1.015380018 1.10853231 0.225435393 0.081433328 385.9417174 506776.9384 0.024889051 0.032077857 1.81E-06 5.742404364 0.093152293 KVS(ph)IVSKPVLYR ddPTM_HeLa_A485_30min_R1 2 KVSIVSKPVLYR 12 2 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 KVS(1)IVSKPVLYR;KVS(0.992)IVS(0.008)KPVLYR ; 168.07 8.26E-11 678910000 969130 768070 576020 976960 985130 968640 1458040 1274530 717400 1275240 TRUE FALSE FALSE 1184709.625 857889.1052 789113.7682 1030328.851 887046.9982 1019356.493 1146517.843 961949.5191 861375.5996 957346.1371 1.237493503 0.896111732 0.82427216 1.076234406 0.926568734 1.064773182 1.197600114 1.004808482 0.899753565 1 19.86868111 -6.284296582 24.17572334 1.043950915 0.98214776 0.019863222 0.125605738 1898.928994 2008460.021 0.045211871 0.039905745 5.20E-07 6.284296582 -0.061803155 KVS(ph)IVSKPVLYR ddPTM_HeLa_A486_30min_R1 2 KVSIVSKPVLYR 12 2 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 KVS(1)IVSKPVLYR;KVS(1)IVSKPVLYR ; 174.49 3.17E-11 1210720000 1157640 1027400 571020 442710 994480 1133160 1425370 1295570 869110 1493160 TRUE FALSE FALSE 1076495.414 945985.0823 792134.2364 1030651.253 869743.0452 993362.2403 1068727.35 1000596.993 944445.1546 1119263.017 0.961789497 0.845185687 0.707728411 0.920830258 0.777067617 0.887514574 0.954849158 0.893978428 0.843809846 1 20.09411767 -6.512672516 23.87806581 0.9153039 0.838806542 0.199019484 0.075624066 476.2408281 1114201.448 0.027486762 0.022681788 3.07E-07 6.512672516 -0.076497359 KVS(ph)LFGK ddPTM_HeLa_A486_30min_R1 1 KVSLFGK 7 1 I3L4G3;O14777 I3L4G3 NDC80 Kinetochore protein NDC80 homolog 1 0 KVS(1)LFGK 54.608 0.027764 282490000 124360 118020 77255 58403 131040 146910 152190 152420 103480 182750 TRUE FALSE FALSE 115643.0062 108667.6654 107170.205 135965.1355 114603.7413 128785.7379 114110.4523 117717.2933 112449.7297 136988.2105 0.84418218 0.793262902 0.782331593 0.992531657 0.836595652 0.940122784 0.832994693 0.859324265 0.820871587 1 17.06369221 KVS(ph)LPK ddPTM_HeLa_A486_30min_R1 1 KVSLPK 6 1 Q9NYQ8 Q9NYQ8 FAT2 Protocadherin Fat 2 1 0 KVS(1)LPK 78.334 0.013325 354450000 479680 392190 192500 246940 262310 726690 597180 445230 450260 809380 TRUE FALSE FALSE 446056.9091 361111.4361 267041.1553 574888.7997 229408.6339 637038.3762 447759.2477 343860.8483 489288.8993 606705.9798 0.735210998 0.595200061 0.440149206 0.947557497 0.378121597 1.049995216 0.738016869 0.566766869 0.806467903 1 19.21063801 -6.260910869 24.99999162 0.799282758 0.626201391 0.223993018 0.193206081 92.30523733 4366352.697 0.06441175 0.060743096 5.48E-07 6.260910869 -0.173081367 KVS(ph)PIKINLK ddPTM_HeLa_A485_30min_R1 1 KVSPIKINLK 10 2 H0Y6F5;Q9H4I2;Q9H4I2-2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 KVS(1)PIKINLK 114.7 0.00023374 1050800000 1433300 1209200 619360 1859900 1655300 1860200 2891100 2979600 1085700 2617600 TRUE FALSE FALSE 1752132.64 1350605.421 848487.0377 1961501.627 1490492.52 1957597.196 2273392.867 2248848.428 1303590.031 1965080.493 0.89163403 0.687302849 0.431782332 0.998178769 0.758489296 0.996191862 1.156895544 1.144405247 0.663377422 1 20.90615698 -5.807937752 1.504569459 1.004117055 0.692563587 0.289434824 0.186173763 0.470364251 2.215169429 0.071248195 0.093665449 1.56E-06 5.807937752 -0.311553468 KVS(ph)PIKINLK ddPTM_HeLa_A486_30min_R1 2 KVSPIKINLK 10 2 H0Y6F5;Q9H4I2;Q9H4I2-2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 KVS(1)PIKINLK;KVS(1)PIKINLK ; 105.03 0.00044077 2971100000 2020850 1614930 655892 996070 1522840 2174530 2855620 2713540 1289190 3423430 TRUE FALSE FALSE 1879198.851 1486957.065 909870.9478 2318901.299 1331831.207 1906258.598 2141113.672 2095726.178 1400938.027 2566180.845 0.732294006 0.579443599 0.354562286 0.90363908 0.518993511 0.74283876 0.83435806 0.816671273 0.545923344 1 21.29119141 -6.191552551 0.954427157 0.792662414 0.591776355 0.187558673 0.170137279 0.987857668 1.928867081 0.096197008 0.094514586 6.43E-07 6.191552551 -0.200886059 KVS(ph)SAEGAAK ddPTM_HeLa_A486_30min_R1 1 KVSSAEGAAK 10 1 P05114;A6NL93;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 KVS(0.868)S(0.132)AEGAAK 66.246 0.01012 0 254370 158320 115350 125590 179890 278950 315430 258580 181430 396890 TRUE FALSE FALSE 236539.9766 145774.1466 160016.6092 292379.867 157326.5188 244535.9852 236506.0777 199706.9788 197156.4985 297506.1607 0.795075894 0.489986985 0.537859817 0.982769117 0.528817684 0.821952677 0.79496195 0.671270061 0.662697196 1 18.18256002 -14 0.209203399 2.414768593 0.654200613 0.270453448 0.14711428 198.718207 1.980089855 118.3167876 0.316867902 1.00E-14 14 -1.76056798 KVS(ph)TSGQIR ddPTM_HeLa_A485_30min_R1 1 KVSTSGQIR 9 1 Q86XP1-2;Q86XP1;A0A087WZ02;C9JY42;A0A096LNI6;Q16760 Q86XP1-2 DGKH;DGKD Diacylglycerol kinase eta;Diacylglycerol kinase delta 1 0 KVS(0.912)T(0.06)S(0.028)GQIR 75.739 0.0065013 377140000 215660 207470 184960 153350 213090 212740 255200 279680 199320 220170 TRUE FALSE FALSE 263632.823 231731.8118 253384.4008 161727.1222 191874.0114 223878.7374 200674.4352 211088.0415 239321.6957 165285.6709 1.595013176 1.402007872 1.533008877 0.978470313 1.160862949 1.354495742 1.214106668 1.277110353 1.447927666 1 17.33460213 -5.227529723 24.96023995 1.221062331 1.499209851 0.487333059 0.142679517 582.8863915 429050.7348 0.038842244 0.067271693 5.92E-06 5.227529723 0.27814752 KVS(ph)TSGQIR ddPTM_HeLa_A486_30min_R1 2 KVSTSGQIR 9 1 Q86XP1-2;Q86XP1;A0A087WZ02;C9JY42;A0A096LNI6;Q16760 Q86XP1-2 DGKH;DGKD Diacylglycerol kinase eta;Diacylglycerol kinase delta 1 0 KVS(0.954)T(0.035)S(0.011)GQIR;KVS(0.832)T(0.114)S(0.054)GQIR ; 110.64 0.00053468 884410000 1096170 1014320 613700 277640 688290 711150 834080 823390 561940 711530 TRUE FALSE FALSE 1019334.144 933941.5891 851341.0755 646359.9511 601958.2502 623415.5434 625384.362 635922.0715 610649.4117 533358.2567 1.911162208 1.75105865 1.596189924 1.211868276 1.128618977 1.168849522 1.172540884 1.192298166 1.144914143 1 19.02474539 -5.06436667 1.644437717 1.141692266 1.877309404 0.96174608 0.057131136 0.067269131 0.347384747 0.017185805 0.047779001 8.62E-06 5.06436667 0.735617138 KVS(ph)VSESNVLLDEEVLTDPK ddPTM_HeLa_A485_30min_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 KVS(0.728)VS(0.136)ES(0.136)NVLLDEEVLTDPK 153.17 5.72E-10 52378000 65186 33801 20998 114140 69681 44422 68793 40818 42586 195430 TRUE FALSE FALSE 79686.40081 37753.73292 28766.034 120375.1792 62743.31498 46747.86723 54094.81356 30807.3215 51132.61958 146712.8976 0.543145164 0.257330702 0.196070246 0.820481233 0.427660526 0.318635021 0.368712052 0.20998373 0.348521639 1 17.16263618 -10.79797323 2.501913547 1.192169354 0.384426302 0.524936123 0.174679956 22674425.89 15098397.42 26458016.88 0.046048543 1.59E-11 10.79797323 -0.807743052 KVS(ph)VSESNVLLDEEVLTDPK ddPTM_HeLa_A486_30min_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 KVS(0.333)VS(0.333)ES(0.333)NVLLDEEVLTDPK 147.41 1.06E-09 66460000 77410 80684 44153 63049 77194 129870 144880 125860 79914 145050 TRUE FALSE FALSE 71983.95875 74290.30599 61250.22406 146781.2583 67511.60871 113847.9598 108629.4916 97204.4255 86841.00986 108728.5359 0.66205213 0.683264107 0.563331637 1.349979167 0.620918953 1.047084456 0.999089068 0.89401025 0.798695661 1 16.7303711 KVSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER ddPTM_HeLa_A485_30min_R1 2 KVSGTLDTPEKTVDSQGPTPVCTPTFLER 29 2 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 KVS(0.022)GT(0.022)LDT(0.955)PEKT(0.001)VDSQGPTPVCTPTFLER;KVS(0.182)GT(0.182)LDT(0.599)PEKT(0.036)VDS(0.001)QGPTPVCTPTFLER ; 107.89 0.00024683 517350000 185622 175718 134849 240377 285439 216364 389195 374208 163225 405457 TRUE FALSE FALSE 226912.9735 196266.6916 184735.2566 253508.1868 257019.6909 227692.4845 306040.3088 282432.9013 195982.7603 304384.0318 0.745482515 0.644799566 0.606915072 0.832856393 0.84439282 0.748043461 1.005441406 0.927883436 0.64386676 1 18.21553315 -5.346000045 5.596112421 0.857270901 0.664235429 0.401571544 0.107477403 0.224630076 11.46493463 0.030367214 0.045624843 4.51E-06 5.346000045 -0.193035472 KVSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER ddPTM_HeLa_A486_30min_R1 1 KVSGTLDTPEKTVDSQGPTPVCTPTFLER 29 2 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 KVS(0.025)GT(0.025)LDT(0.949)PEKTVDSQGPTPVCTPTFLER 175.67 1.08E-14 472590000 100650 98103 43090 51186 100520 96317 131750 120900 55193 155880 TRUE FALSE FALSE 93594.95476 90328.961 59775.60199 119163.5948 87911.84429 84434.38782 98784.75649 93373.70923 59977.17368 116846.6334 0.801006859 0.773055743 0.511573164 1.019829081 0.75236951 0.722608648 0.845422359 0.799113389 0.513298261 1 16.83425664 -11.11942248 2.588570006 1.501292236 0.754082442 0.219364362 0.141892651 16644589.04 4113541.06 49379745.05 0.034417957 7.60E-12 11.11942248 -0.747209794 KVSS(ph)AEGAAK ddPTM_HeLa_A485_30min_R1 2 KVSSAEGAAK 10 1 P05114;A6NL93;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 KVS(0.057)S(0.943)AEGAAK;KVS(0.033)S(0.967)AEGAAK ; 125.73 6.53E-05 560550000 728480 538830 310470 996740 500570 609400 823650 855650 514670 1381400 TRUE FALSE FALSE 890527.8628 601841.4813 425325.7727 1051189.382 450731.4932 641307.2417 647670.4489 645800.4959 617959.5482 1037042.403 0.858718853 0.58034414 0.410133444 1.01364166 0.434631691 0.618400212 0.62453613 0.62273297 0.595886481 1 19.98404345 -10.44516081 6.191211075 1.000134109 0.634749912 0.287104026 0.170060959 0.000299126 2.68E-05 0.156458469 0.037932964 3.59E-11 10.44516081 -0.365384197 KVST(ph)SGQIR ddPTM_HeLa_A485_30min_R1 3 KVSTSGQIR 9 1 Q86XP1-2;Q86XP1;A0A087WZ02;C9JY42;A0A096LNI6;Q16760 Q86XP1-2 DGKH;DGKD Diacylglycerol kinase eta;Diacylglycerol kinase delta 1 0 KVS(0.156)T(0.64)S(0.204)GQIR;KVS(0.317)T(0.633)S(0.05)GQIR;KVS(0.165)T(0.67)S(0.165)GQIR ;; 116.24 0.00055584 1218780000 1274340 1248510 905960 1032440 1206600 1153320 1445080 1695300 1116880 1510590 TRUE FALSE FALSE 1557812.537 1394512.384 1241112.304 1088839.583 1086466.667 1213706.052 1136326.853 1279525.017 1341027.571 1134027.713 1.373698824 1.229698682 1.094428548 0.960152534 0.958060067 1.070261368 1.00202741 1.128301365 1.182535096 1 20.11302447 -4.58711179 2.153161786 1.043487175 1.375904991 0.710976437 0.067910065 0.217477859 1.75066834 0.020302048 0.107556576 2.59E-05 4.58711179 0.332417816 AQLDYVDLYLIHSPMSLKPGEELS(ph)PTDENGK ddPTM_HeLa_A486_30min_R1 2 AQLDYVDLYLIHSPMSLKPGEELSPTDENGK 31 1 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 1 0 AQLDYVDLYLIHSPMSLKPGEELS(0.997)PT(0.003)DENGK;AQLDYVDLYLIHSPMS(0.016)LKPGEELS(0.845)PT(0.14)DENGK ; 282.98 5.34E-78 796670000 176340 288941 154042 141241 260578 479965 504059 426384 375966 584315 TRUE FALSE FALSE 163979.4766 266044.2629 213691.1878 328816.1859 227893.8774 420751.7982 377938.1068 329305.6711 408555.0356 437998.7207 0.37438346 0.607408767 0.487880849 0.750724078 0.520307176 0.96062335 0.86287491 0.751841628 0.932776778 1 18.74056713 -4.49265736 0.263487569 1.005579756 1.06E-20 0.723315308 0.109023433 4.445345272 0.287476106 0.148643646 1.446708942 3.22E-05 4.49265736 -1.005579756 down KVT(ph)YQR ddPTM_HeLa_A485_30min_R1 1 KVTYQR 6 1 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;Q9Y6N7-6 A0A087WZ85 ROBO1 Roundabout homolog 1 1 0 KVT(1)YQR 84.476 0.015873 79218000 92277 70904 44710 81367 41767 49869 75918 92860 70426 176160 TRUE FALSE FALSE 112803.7003 79195.60602 61250.08954 85811.87318 37608.53083 52480.06373 59697.49911 70085.9394 84559.85221 132246.554 0.852980262 0.598848164 0.463150741 0.648877953 0.284381934 0.396835019 0.451410621 0.529964202 0.639410629 1 17.0128706 -8.19346127 2.258413713 0.999696857 0.517118346 0.484164869 0.145913895 0.677203541 5.963480725 0.146868887 0.040189734 6.41E-09 8.19346127 -0.48257851 KVTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_A485_30min_R1 4 KVTAEADSSSPTGILATSESK 21 1 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 KVTAEADS(0.018)S(0.16)S(0.82)PT(0.003)GILATSESK;KVTAEADSSS(0.97)PT(0.029)GILATSESK;KVT(0.005)AEADS(0.01)S(0.091)S(0.891)PT(0.003)GILATSESK;KVTAEADS(0.002)S(0.016)S(0.981)PTGILATSESK ;;; 261.39 3.30E-59 1546680000 1854850 1786700 1346990 2391070 2241530 2223490 3068930 3222490 1790610 3184710 TRUE FALSE FALSE 2267454.983 1995639.023 1845297.654 2521688.1 2018355.403 2339908.498 2413228.035 2432169.275 2149969.003 2390820.407 0.94840038 0.834708879 0.771826126 1.054737567 0.844210379 0.978705256 1.009372359 1.017294845 0.899259934 1 21.18907433 -5.259270847 24.99974532 0.96918016 0.849951507 0.383145651 0.069875235 203.3352642 2344119.573 0.019112067 0.031125044 5.50E-06 5.259270847 -0.119228653 KVTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_A486_30min_R1 4 KVTAEADSSSPTGILATSESK 21 1 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 KVTAEADS(0.024)S(0.17)S(0.8)PT(0.005)GILATSESK;KVT(0.002)AEADS(0.036)S(0.273)S(0.684)PT(0.004)GILATSESK;KVTAEADS(0.022)S(0.13)S(0.846)PT(0.002)GILATSESK;KVT(0.001)AEADS(0.028)S(0.164)S(0.714)PT(0.092)GILATSESK ;;; 191.59 8.55E-20 2692730000 3083260 2747220 1395160 1197061 2623300 3016540 3654820 3511620 2222110 3884800 TRUE FALSE FALSE 2867139.396 2529520.282 1935403.316 2786818.504 2294261.253 2644389.965 2740345.379 2712100.784 2414724.284 2912020.794 0.984587542 0.86864774 0.664625514 0.957005015 0.787858815 0.908094465 0.941045952 0.931346641 0.829226319 1 21.47358923 -6.49017264 20.90967632 0.92038172 0.84872016 0.126789868 0.091308939 194.6264868 124428.4343 0.031987111 0.028161072 3.23E-07 6.49017264 -0.07166156 KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 KVTGTEGSSSTLVDYTSTSSTGGSPVR 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 KVTGTEGSSSTLVDYTSTSSTGGS(1)PVR;KVTGTEGSSSTLVDYTSTSS(0.001)T(0.094)GGS(0.905)PVR;KVTGTEGSSSTLVDYTSTSST(0.001)GGS(0.999)PVR;KVTGTEGSSSTLVDYTSTSS(0.001)T(0.005)GGS(0.994)PVR ;;; 255.87 3.76E-63 1606870000 1483390 1711820 1605840 1503630 2047500 1754600 2041580 2083290 1741460 2145280 TRUE FALSE FALSE 1813364.988 1912002.458 2199907.041 1585769.5 1843643.711 1846468.143 1605379.755 1572359.861 2090955.048 1610501.177 1.125963156 1.1872096 1.365976674 0.98464349 1.144763964 1.146517723 0.996819982 0.976317114 1.298325688 1 20.61907828 -5.27379659 24.93620546 1.079440948 1.2224658 0.276378728 0.109811768 971.7749889 1960988.717 0.030565245 0.045724343 5.32E-06 5.27379659 0.143024851 KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 KVTGTEGSSSTLVDYTSTSSTGGSPVR 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 KVTGTEGSSSTLVDYTSTSSTGGS(1)PVR;KVTGTEGSSSTLVDYTSTSSTGGS(1)PVR;KVTGTEGSSSTLVDYTSTSST(0.001)GGS(0.999)PVR;KVTGTEGSSSTLVDYTSTSSTGGS(1)PVR ;;; 283.45 1.58E-77 1643270000 1609780 1771560 1255140 510006 1802930 1481300 1634760 1599990 1443110 1676030 TRUE FALSE FALSE 1496942.735 1631175.134 1741163.822 1187319.742 1576789.708 1298552.267 1225725.757 1235707.205 1568199.937 1256341.179 1.191509727 1.298353633 1.385900463 0.94506155 1.255064893 1.033598427 0.975631284 0.983576138 1.248227761 1 20.26079687 -5.257276698 24.99690102 1.065472954 1.292564512 0.472308812 0.110852085 316.2785497 1899243.874 0.030165143 0.049882782 5.53E-06 5.257276698 0.227091558 KVTLS(ph)SSK ddPTM_HeLa_A486_30min_R1 1 KVTLSSSK 8 1 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 KVTLS(0.941)S(0.048)S(0.011)K 77.597 0.0064599 440150000 392650 347860 193270 163120 379440 447380 518890 469760 274330 595070 TRUE FALSE FALSE 365127.2626 320294.3067 268109.32 379751.6036 331847.0971 392186.8042 389058.2337 362805.9028 298109.1453 446060.5987 0.818559773 0.718051107 0.601060306 0.851345321 0.743950705 0.879223149 0.87220937 0.813355638 0.66831535 1 18.76688019 -5.296590096 24.93428581 0.824747405 0.713106382 0.245984877 0.095639552 846.3692267 600373.2933 0.026513095 0.039326964 5.05E-06 5.296590096 -0.111641023 KVTLSVLSR ddPTM_HeLa_A485_30min_R1 2 KVTLSVLSR 9 1 O00625 O00625 PIR Pirin 0 0 ; ; 189.58 6.73E-09 198279000 180931 227340 217950 174906 250080 274780 300840 325590 171616 248150 FALSE FALSE TRUE 221178.4767 253925.4354 298578.7747 184460.6719 225181.1571 289167.0559 236563.0764 245738.542 206057.757 186290.7719 1.18727554 1.363059656 1.602756657 0.99017611 1.208761738 1.552234998 1.269859339 1.319112802 1.106108236 1 17.50719668 -7.888678507 3.034637085 1.001570476 1.31680163 0.287366406 0.166518562 0.303993745 5.456118723 0.16152875 0.043657115 1.29E-08 7.888678507 0.315231154 KVTLSVLSR ddPTM_HeLa_A486_30min_R1 2 KVTLSVLSR 9 1 O00625 O00625 PIR Pirin 0 0 ; ; 176.95 2.96E-08 205029000 275580 306330 251420 99868 338780 278650 338430 316710 257700 347140 FALSE FALSE TRUE 256263.2651 282055.2952 348776.5573 232497.751 296287.0534 244272.9961 253751.2345 244602.0467 280037.6435 260213.8845 0.984817799 1.083936377 1.340345685 0.893487108 1.138628917 0.938739286 0.975164085 0.940003825 1.076182557 1 17.98933842 -5.298782488 24.99995116 0.994964743 1.131124018 0.274120307 0.105611942 743.1222668 497493.9002 0.029369122 0.043562466 5.03E-06 5.298782488 0.136159275 KVTPIDS(ph)PPVWS(ph)PEGYMALQSK ddPTM_HeLa_A485_30min_R1 1 KVTPIDSPPVWSPEGYMALQSK 22 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 2 0 KVT(0.014)PIDS(0.986)PPVWS(1)PEGYMALQSK 136 3.95E-07 244040000 133250 182760 147490 146040 222580 200880 254920 326630 165910 203760 TRUE FALSE FALSE 162891.0028 204132.1922 202052.6886 154017.7954 200419.1537 211397.7662 200454.2595 246523.4804 199206.6152 152966.3819 1.064881059 1.334490557 1.320896043 1.006873494 1.310216998 1.381988405 1.310446498 1.611618692 1.302290168 1 17.22285509 -5.984804934 24.98215926 1.357405691 1.197118764 0.117527525 0.169139638 428.8927891 705137.6827 0.050923283 0.057722416 1.04E-06 5.984804934 -0.160286927 KVTPIDSPPVWS(ph)PEGYMALQSK ddPTM_HeLa_A485_30min_R1 2 KVTPIDSPPVWSPEGYMALQSK 22 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 KVTPIDSPPVWS(0.998)PEGY(0.002)MALQSK;KVTPIDSPPVWS(1)PEGYMALQSK ; 213.37 7.10E-28 473610000 328330 346421 251179 317168 410153 393129 507653 618520 316029 428611 TRUE FALSE FALSE 401365.8758 386931.9225 344100.5645 334494.0847 369316.7272 413712.6265 399188.7894 466827.0002 379453.1215 321766.1657 1.247383717 1.202525199 1.069411894 1.039556424 1.147779868 1.285755529 1.240617666 1.450826874 1.17928223 1 18.29565311 -6.214904204 6.731390983 1.260012116 1.134502664 0.100593365 0.119301844 0.38642195 45.23134517 0.039266037 0.038976599 6.10E-07 6.214904204 -0.125509453 KVTSPSSSSSSSSSDS(ph)ESDDEADVSEVTPR ddPTM_HeLa_A486_30min_R1 1 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 1 0 KVTSPSSSSSSSS(0.001)S(0.002)DS(0.611)ES(0.386)DDEADVSEVTPR 210.48 1.69E-29 768870000 235480 233860 172100 76801 243330 245150 256920 222930 212720 262760 TRUE FALSE FALSE 218974.068 215328.0819 238741.729 178796.6093 212809.2824 214905.8855 192635.8986 172173.7055 231158.7409 196963.1857 1.11175125 1.093240247 1.212113462 0.90776664 1.080452074 1.091096718 0.97802997 0.874141555 1.173613942 1 17.58756648 -5.252988764 24.99770515 1.014125958 1.134455507 0.296665139 0.087415915 819.2570491 2423432.067 0.023499916 0.039844327 5.58E-06 5.252988764 0.120329549 KVTSPSSSSSSSSSDSES(ph)DDEADVSEVTPR ddPTM_HeLa_A485_30min_R1 3 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 1 0 KVTSPSSSSSSSSS(0.002)DS(0.221)ES(0.777)DDEADVSEVTPR;KVTSPSSSSSSSSSDS(0.01)ES(0.989)DDEADVSEVTPR;KVTSPSSSSSSSSSDS(0.006)ES(0.993)DDEADVSEVTPR ;; 220.64 6.83E-39 1438120000 589760 726290 574600 631030 815000 769870 865410 987310 687090 1006850 TRUE FALSE FALSE 720950.0774 811223.2976 787168.4511 665501.571 733855.7384 810179.2028 680508.0838 745170.6745 824982.6606 755860.8247 0.95381326 1.073244268 1.041419829 0.88045517 0.970887383 1.071862936 0.90030871 0.985856986 1.091447835 1 19.52776109 -7.723196008 22.85578328 1.045723797 0.985724026 0.124038485 0.064791073 124.9824275 74694.65885 0.044400734 0.016780258 1.89E-08 7.723196008 -0.059999771 KVTSPSSSSSSSSSDSES(ph)DDEADVSEVTPR ddPTM_HeLa_A486_30min_R1 2 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 1 0 KVTSPSSSSSSSS(0.002)S(0.056)DS(0.101)ES(0.841)DDEADVSEVTPR;KVTSPSSSSSSSSSDS(0.001)ES(0.998)DDEADVSEVTPR ; 305.02 3.46E-93 934020000 513750 544140 330847 186285 530870 535470 599400 603630 490150 633410 TRUE FALSE FALSE 477738.778 501020.3647 458959.8188 433680.8943 464283.3344 469409.1557 449423.7802 466196.6262 532636.5966 474800.0132 1.006189479 1.055223991 0.966638176 0.913396972 0.977850298 0.988646046 0.946553849 0.981879977 1.121812514 1 18.85696045 -7.66830145 10.22255019 1.060671226 0.978404033 0.350940091 0.044250927 0.347255209 34.60885509 0.030753383 0.011579845 2.15E-08 7.66830145 -0.082267193 KVTVS(ph)AR ddPTM_HeLa_A485_30min_R1 4 KVTVSAR 7 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 KVT(0.144)VS(0.856)AR;KVT(0.033)VS(0.967)AR;KVT(0.004)VS(0.996)AR;KVT(0.001)VS(0.999)AR ;;; 90.108 0.0039886 1935400000 1962060 2135520 1799010 1859470 2720300 2349460 2635460 3094940 1935820 2468890 TRUE FALSE FALSE 2398513.478 2385250.487 2464538.662 1961048.138 2449457.38 2472474.093 2072372.441 2335901.112 2324321.318 1853441.16 1.294086659 1.286930786 1.329709686 1.058057941 1.321572777 1.333991144 1.118121517 1.260304974 1.254057247 1 20.82177488 -13.19895986 0.261649573 4.56E-15 1.27029944 0.432848014 0.086779818 122.6761695 1.777802061 65.60725915 0.116352066 6.32E-14 13.19895986 1.27029944 KVTVS(ph)AR ddPTM_HeLa_A486_30min_R1 4 KVTVSAR 7 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 KVTVS(1)AR;KVT(0.018)VS(0.982)AR;KVT(0.002)VS(0.998)AR;KVTVS(1)AR ;;; 102.06 0.0023974 1423980000 2581310 2621350 2038460 987250 2762890 2725100 2973310 2833350 2137230 2911180 TRUE FALSE FALSE 2400373.499 2413624.679 2827806.304 2298367.893 2416342.573 2388904.869 2229356.39 2188258.057 2322486.817 2182201.579 1.099977895 1.106050285 1.295850177 1.053233539 1.107295768 1.094722363 1.021608824 1.002775398 1.064286104 1 21.05735295 -6.275692968 1.042439113 1.019311471 1.151531297 0.428230816 0.061036967 0.507561103 1.157479557 0.034724709 0.031025032 5.30E-07 6.275692968 0.132219826 KVVDYSQFQES(ph)DDADEDYGR ddPTM_HeLa_A485_30min_R1 58 KVVDYSQFQESDDADEDYGR 20 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.998)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)SQFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)S(0.004)QFQES(0.995)DDADEDY(0.001)GR;KVVDY(0.001)S(0.001)QFQES(0.996)DDADEDY(0.003)GR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)S(0.001)QFQES(0.997)DDADEDY(0.002)GR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.021)QFQES(0.979)DDADEDYGR;KVVDYS(0.002)QFQES(0.998)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 318.85 3.17E-102 4.33E+11 25782391.5 25134910.2 24026676.6 32579326.8 31891461 26839718 33535370.5 29927849.1 26818656.9 41904269.1 TRUE FALSE FALSE 31517595.54 28074219.3 32915144.11 34359052.93 28716235.17 28245004.13 26370264.63 22587997.18 32200915.34 31458306 1.001884702 0.89242629 1.046310126 1.092209254 0.912834759 0.897855216 0.838260796 0.718029673 1.023606145 1 24.90693765 -5.955737049 9.077878116 0.877732578 1.002894182 0.242578409 0.092609643 0.419544645 80.50903148 0.028958191 0.032807912 1.11E-06 5.955737049 0.125161604 KVVDYSQFQES(ph)DDADEDYGR ddPTM_HeLa_A486_30min_R1 64 KVVDYSQFQESDDADEDYGR 20 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(0.999)DDADEDY(0.001)GR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)S(0.001)QFQES(0.994)DDADEDY(0.004)GR;KVVDYSQFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(0.998)DDADEDY(0.001)GR;KVVDY(0.001)S(0.007)QFQES(0.992)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 297.13 4.21E-87 4.58E+11 26667262.2 29792334.2 20382345.8 10245593.3 28484940.5 28376221.7 30794288.7 29913302.7 23839914.9 31816459.5 TRUE FALSE FALSE 24798024.83 27431481.14 28274935.95 23852258.99 24912093.65 24875451.97 23089231.96 23102696.68 25906377.92 23849410.95 1.039775149 1.150195332 1.185561187 1.000119417 1.044558027 1.043021651 0.96812588 0.968690452 1.086248125 1 24.5074503 -5.275449768 24.97501145 1.01486194 1.127679034 0.520515794 0.048072366 587.4854012 1047253.927 0.013726657 0.020462709 5.30E-06 5.275449768 0.112817094 KVVDYSQFQES(ph)DDADEDYGRDS(ph)GPPTKK ddPTM_HeLa_A486_30min_R1 1 KVVDYSQFQESDDADEDYGRDSGPPTKK 28 3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 KVVDYSQFQES(1)DDADEDYGRDS(0.986)GPPT(0.014)KK 176.01 6.49E-15 338390000 221860 191670 69246 99903 176990 240990 309040 304580 137280 354140 TRUE FALSE FALSE 206308.7597 176481.3711 96059.90567 232579.2328 154790.2638 211259.104 231714.9233 235233.7829 149179.5409 265461.0389 0.777171522 0.664810821 0.361860656 0.876133212 0.583099744 0.795819623 0.872877332 0.886132985 0.561963976 1 18.01814061 -6.370678528 5.729566013 0.822187641 0.649978938 0.219168355 0.16162714 0.381996987 17.09385953 0.056613707 0.049703505 4.26E-07 6.370678528 -0.172208703 KVVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_HeLa_A485_30min_R1 9 KVVDYSQFQESDDADEDYGRDSGPPTK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYS(0.007)QFQES(0.993)DDADEDYGRDSGPPTK;KVVDYS(0.001)QFQES(0.999)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDY(0.001)S(0.336)QFQES(0.663)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYS(0.007)QFQES(0.993)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK ;;;;;;;; 320.88 4.71E-109 65662910000 5584328 6384265 4578029 5872842 8620917 8533233 12451054 14680722 6158417 8472877 TRUE FALSE FALSE 6826542.498 7130849.256 6271632.435 6193660.488 7762588.234 8980019.885 9790784.597 11080251.91 7394354.804 6360744.696 1.073230074 1.121071446 0.985990279 0.973731974 1.220389845 1.411787505 1.539251309 1.741974005 1.162498286 1 22.60076425 -6.060372773 2.970739622 1.428059306 1.041937283 0.373490125 0.195414141 0.241695273 4.213744365 0.066255364 0.069296261 8.70E-07 6.060372773 -0.386122023 KVVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_HeLa_A486_30min_R1 16 KVVDYSQFQESDDADEDYGRDSGPPTK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYS(0.135)QFQES(0.865)DDADEDYGRDSGPPTK;KVVDY(0.013)S(0.014)QFQES(0.969)DDADEDY(0.003)GRDS(0.001)GPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYS(0.069)QFQES(0.931)DDADEDYGRDSGPPTK;KVVDYS(0.001)QFQES(0.998)DDADEDYGRDS(0.001)GPPTK;KVVDYS(0.004)QFQES(0.996)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDY(0.001)S(0.002)QFQES(0.996)DDADEDYGRDSGPPTK ;;;;;;;;;;;;;;; 310.88 1.32E-108 1.14E+11 6029986 5575495 3437970 2778431 6859432 5706465 8003991 8127281 4029181 7379106 TRUE FALSE FALSE 5607315.12 5133672.471 4769244.056 6468327.782 5999058.077 5002459.367 6001307.794 6276876.534 4378433.653 5531329.828 1.013737256 0.928108182 0.86222377 1.169398315 1.084559819 0.904386381 1.084966542 1.13478616 0.791569801 1 22.39919494 -5.230872799 24.98157339 1.029904221 0.934031602 0.120311908 0.110215548 1425.506508 1165042.002 0.029593535 0.051248252 5.88E-06 5.230872799 -0.095872619 KVVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_HeLa_A485_30min_R1 9 KVVDYSQFQESDDADEDYGRDSGPPTKK 28 3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDY(0.004)S(0.005)QFQES(0.987)DDADEDY(0.001)GRDS(0.002)GPPT(0.002)KK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK ;;;;;;;; 299.92 2.86E-92 86151610000 4022708 4751404 2684743 3601424 6269026 7829163 12426357 17903800 4450467 5767082 TRUE FALSE FALSE 4917545.516 5307039.366 3677941.157 3798160.674 5644859.76 8239085.868 9771364.313 13512864.98 5343634.905 4329454.593 1.135834875 1.225798597 0.849516048 0.877283869 1.303826992 1.9030309 2.256950409 3.121147177 1.234251287 1 22.04575386 -6.21589716 2.785687193 2.078547299 1.028956315 0.343177877 0.558001475 0.26506059 4.081980196 0.199410961 0.190815239 6.08E-07 6.21589716 -1.049590985 KVVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_HeLa_A486_30min_R1 9 KVVDYSQFQESDDADEDYGRDSGPPTKK 28 3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK;KVVDY(0.003)S(0.003)QFQES(0.994)DDADEDY(0.001)GRDSGPPTKK;KVVDY(0.001)S(0.001)QFQES(0.998)DDADEDYGRDSGPPTKK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK ;;;;;;;; 344.74 1.61E-127 51406200000 5499930 3557323 1947123 2624754 5214704 4073698 6894009 7301400 2557088 7414254 TRUE FALSE FALSE 5114413.309 3275427.77 2701101.171 6110559.96 4560627.199 3571126.559 5169055.031 5639030.608 2778738.447 5557676.54 0.920243068 0.589351997 0.486012662 1.099481036 0.82059961 0.642557467 0.930074824 1.014638144 0.499982039 1 22.40605044 -14 0.104138152 1.602769746 0.659536887 0.067736382 0.208278724 498.986874 3.4967506 67.06821473 3.144500096 1.00E-14 14 -0.943232858 KVVEAVNS(ph)DS(ph)DSEFGIPK ddPTM_HeLa_A485_30min_R1 2 KVVEAVNSDSDSEFGIPK 18 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 KVVEAVNS(0.999)DS(0.987)DS(0.014)EFGIPK;KVVEAVNS(0.997)DS(0.837)DS(0.166)EFGIPK ; 107.75 5.62E-05 1085810000 300600 273780 221380 440770 353480 399850 570720 588350 328270 631090 TRUE FALSE FALSE 367467.4329 305796.1894 303277.6744 464848.149 318286.2901 420785.5277 448781.0096 444056.24 394150.7779 473770.8774 0.77562267 0.645451639 0.640135747 0.981166575 0.671814806 0.888162502 0.947253263 0.937280574 0.831943872 1 18.85382999 -5.859553829 0.612826131 0.942416852 0.674593609 0.437202281 0.100214259 0.878970081 0.708327918 0.072215122 0.124685549 1.38E-06 5.859553829 -0.267823243 KVVEAVNS(ph)DS(ph)DSEFGIPK ddPTM_HeLa_A486_30min_R1 2 KVVEAVNSDSDSEFGIPK 18 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 KVVEAVNS(1)DS(0.999)DS(0.001)EFGIPK;KVVEAVNS(1)DS(0.964)DS(0.036)EFGIPK ; 153.59 9.58E-12 710400000 649220 635000 287730 280680 490170 646110 912240 736390 492130 984820 TRUE FALSE FALSE 603713.0306 584680.2874 399146.7617 653437.2248 428688.3079 566399.5174 683987.9033 568730.0723 534788.2246 738214.6619 0.817801463 0.792019337 0.540692 0.885158828 0.580709555 0.767255849 0.926543374 0.770412864 0.724434575 1 19.49368087 -6.530165693 24.77828034 0.837741776 0.720748955 0.206119819 0.120476538 287.1687155 976465.6808 0.044393293 0.034460086 2.95E-07 6.530165693 -0.116992821 KVVGCSCVVVK ddPTM_HeLa_A485_30min_R1 2 KVVGCSCVVVK 11 1 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ; ; 124.38 0.0010401 113151000 161342 197258 163928 176391 242640 219660 261320 295710 170330 247920 FALSE FALSE TRUE 197231.9713 220325.6072 224571.7888 186026.7937 218481.9096 231161.0579 205486.8472 223186.6588 204513.6686 186118.1066 1.059714043 1.183794587 1.206609034 0.999509382 1.173888525 1.242012731 1.104066933 1.199166824 1.098838111 1 17.50585889 -8.014620382 21.14502552 0.999999995 1.147317921 0.289750406 0.069713591 132.0367811 190963.3014 0.066299628 0.017118486 9.67E-09 8.014620382 0.147317925 KVVS(ph)LNGELGDSWIVPLDNLTK ddPTM_HeLa_A485_30min_R1 2 KVVSLNGELGDSWIVPLDNLTK 22 1 O00592-2;O00592 O00592-2 PODXL Podocalyxin 1 0 KVVS(0.996)LNGELGDS(0.004)WIVPLDNLTK;KVVS(1)LNGELGDSWIVPLDNLTK ; 155.14 3.63E-10 181997000 113876 92184 37628 122370 57405 97203 136259 120763 64580 222076 TRUE FALSE FALSE 139207.3233 102964.1169 51548.16303 129054.7632 51689.55664 102292.3988 107146.1515 91145.6849 77540.61364 166716.5402 0.834994075 0.61759989 0.309196454 0.774096938 0.310044562 0.613570787 0.642684591 0.546710511 0.465104503 1 17.34703772 -10.47851657 3.462081148 1.006831748 0.563409137 0.384159298 0.163904087 110639137.6 150517114.3 7249068.963 0.039334056 3.32E-11 10.47851657 -0.443422611 KVVS(ph)LNGELGDSWIVPLDNLTK ddPTM_HeLa_A486_30min_R1 2 KVVSLNGELGDSWIVPLDNLTK 22 1 O00592-2;O00592 O00592-2 PODXL Podocalyxin 1 0 KVVS(1)LNGELGDSWIVPLDNLTK;KVVS(1)LNGELGDSWIVPLDNLTK ; 173.96 1.59E-14 127199000 217630 215370 102262 81080 157143 239200 199766 176393 206490 347060 TRUE FALSE FALSE 202375.2608 198303.2968 141860.5851 188758.3376 137432.6596 209689.936 149782.4339 136232.1645 224388.7195 260153.917 0.777905876 0.762253742 0.545294827 0.72556408 0.52827442 0.806022598 0.575745449 0.523659863 0.862522933 1 17.9890059 -7.966924373 5.650069231 0.999386455 0.656707092 0.551523667 0.103109803 0.108715683 9.08847231 0.097634135 0.02537689 1.08E-08 7.966924373 -0.342679363 KVVT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 KVVTSPR 7 1 A0A075B754;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 KVVT(0.5)S(0.5)PR 67.993 0.011063 0 220170 302660 244700 228650 309150 289720 333170 509030 336190 434430 TRUE FALSE FALSE 269146.0569 338053.4542 335224.7128 241140.5705 278369.9405 304889.2912 261985.5078 384189.5944 403660.2493 326134.5961 0.825260675 1.036545826 1.027872286 0.739389729 0.853543119 0.934857249 0.803304865 1.178009322 1.237710608 1 18.31510796 -7.270981479 24.59589892 1.155895009 0.894404979 0.541860603 0.104842558 422.004942 1087760.187 0.057507617 0.028202128 5.36E-08 7.270981479 -0.26149003 KVVTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 KVVTSPR 7 1 A0A075B754;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 KVVT(0.376)S(0.624)PR 59.8 0.022054 103990000 204280 171290 157660 64023 199550 213270 220940 182860 190770 235070 TRUE FALSE FALSE 189961.0269 157716.3566 218710.1743 149048.7795 174520.5783 186958.9158 165658.4751 141226.7698 207306.0972 176206.942 1.078056431 0.895063241 1.24121202 0.845873482 0.990429641 1.061019014 0.940135918 0.80148244 1.176492225 1 17.42691124 -5.296040151 24.99987263 0.968306914 1.053806203 0.107164539 0.125679301 1489.045616 1075867.993 0.03413711 0.050636241 5.06E-06 5.296040151 0.085499289 KVVVS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVVVS(0.799)PT(0.201)K;KVVVS(0.628)PT(0.372)K ; 80.69 0.0050743 18058100000 5185800 4581300 3212310 6998700 5469900 5393800 8545800 8545400 4173390 8706600 TRUE FALSE FALSE 6339363.319 5117043.183 4400677.144 7381021.259 4925297.55 5676211.028 6719920.017 6449627.251 5010951.092 6536204.853 0.96988443 0.782876807 0.673277115 1.129251825 0.753540879 0.868426121 1.028107314 0.986754148 0.766645355 1 22.64002177 -5.238351057 24.99794382 0.926458598 0.806099226 0.164036984 0.128186056 1536.982283 1664102.914 0.034374153 0.059491419 5.78E-06 5.238351057 -0.120359372 KVVVS(ph)PTK ddPTM_HeLa_A486_30min_R1 5 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVVVS(0.5)PT(0.5)K;KVVVS(0.625)PT(0.375)K;KVVVS(0.632)PT(0.368)K;KVVVS(0.816)PT(0.184)K;KVVVS(0.927)PT(0.073)K ;;;; 127.83 0.0013935 10435370000 11631400 11308770 5617010 5409180 9959920 11832420 15070730 14267460 8085070 16147620 TRUE FALSE FALSE 10816098.92 10412621.88 7792066.701 12592844.4 8710653.961 10372656.32 11299873.95 11019070.81 8785890.377 12104150.85 0.893585933 0.860252157 0.643751619 1.040374047 0.719641887 0.856950351 0.933553629 0.910354717 0.725857641 1 23.52899854 -6.52424454 24.9768843 0.886439767 0.829689351 0.055536034 0.117286986 163.4954273 2989759.748 0.04292631 0.033526527 2.99E-07 6.52424454 -0.056750416 KVVVS(ph)PTKK ddPTM_HeLa_A485_30min_R1 1 KVVVSPTKK 9 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVVVS(0.8)PT(0.2)KK 83.617 0.009596 0 130260 1539100 87262 5241500 374710 405670 637230 568840 177910 2075800 TRUE FALSE FALSE 159235.8876 1719084.357 119543.8451 5527829.873 337402.5567 426910.2539 501080.6048 429331.0981 213614.9051 1558341.262 0.102182937 1.103150124 0.076712238 3.547252458 0.216513908 0.27395171 0.321547415 0.275505185 0.137078386 1 20.57157977 KVVVS(ph)PTKK ddPTM_HeLa_A486_30min_R1 1 KVVVSPTKK 9 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVVVS(0.68)PT(0.32)KK 79.639 0.011879 0 164530 2676700 87350 3018300 308000 539970 740800 508440 222480 2357900 TRUE FALSE FALSE 152997.2966 2464588.544 121174.2593 7026754.936 269367.768 473353.9914 555444.0046 392679.3112 241764.7455 1767466.493 0.086563054 1.394418821 0.068558165 3.975608571 0.152403324 0.267814973 0.314259991 0.222170724 0.136786042 1 20.75325143 KVVVSPT(ph)K ddPTM_HeLa_A485_30min_R1 3 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVVVS(0.204)PT(0.796)K;KVVVS(0.229)PT(0.771)K;KVVVS(0.227)PT(0.773)K ;; 105.36 0.0012432 1.26E+11 106403000 96741680 66019450 146944370 117864780 113053130 169092150 170561490 86620710 173074100 TRUE FALSE FALSE 130071980.3 108054777.9 90442791.85 154971568.9 106129748.7 118972417.1 132964230.8 128731017.1 104004692 129929912.1 1.001093422 0.831638968 0.696089072 1.192732038 0.816823062 0.915666109 1.023353504 0.990772757 0.800467655 1 26.95315836 -5.224887582 24.99994288 0.956919432 0.841810428 0.161403221 0.124715023 1131.977991 774225.7732 0.033105197 0.057337458 5.96E-06 5.224887582 -0.115109004 KVVVSPT(ph)K ddPTM_HeLa_A486_30min_R1 2 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 KVVVS(0.218)PT(0.782)K;KVVVS(0.199)PT(0.801)K ; 84.605 0.0048932 1.52E+11 103358000 98600000 49403000 48151000 84377000 105552000 136047000 127767000 73193000 141181000 TRUE FALSE FALSE 96113137.94 90786576.9 68533164.66 112097961.4 73793649.88 92530067.41 102006601.6 98677243.23 79537428.17 105828358.7 0.908198324 0.857866247 0.647587901 1.059243126 0.69729561 0.874340948 0.963887213 0.932427229 0.751570082 1 26.65715104 -6.519104055 24.8851386 0.908164933 0.832345376 0.083892663 0.121206681 416.7267892 2747363.591 0.043971798 0.03483786 3.03E-07 6.519104055 -0.075819558 KVVVSPTK ddPTM_HeLa_A486_30min_R1 1 KVVVSPTK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 0 107.15 0.00064425 0 703290 632720 301140 312760 565020 715420 883970 861450 523470 993120 FALSE FALSE TRUE 653993.0028 582580.9629 417749.4728 728121.086 494149.923 627158.7543 662791.3563 665316.6403 568844.8011 744436.2879 0.878507689 0.782580017 0.561162157 0.978083817 0.663790752 0.842461288 0.890326502 0.893718712 0.764128254 1 19.50578886 -6.509052363 23.27614707 0.876501963 0.771022559 0.172429102 0.117672508 498.7414945 839616.3263 0.041122362 0.034753842 3.10E-07 6.509052363 -0.105479404 KVVVSPTK(ac)K ddPTM_HeLa_A486_30min_R1 1 KVVVSPTKK 9 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 KVVVSPTK(1)K 107.06 0.0080246 0 328650 465230 370040 148080 560030 489920 517400 507550 411920 475440 FALSE TRUE FALSE 305613.3322 428363.4805 513329.398 344737.7235 489785.8153 429478.6515 387941.0475 391991.9447 447625.5573 356386.7294 0.857532862 1.201962489 1.440371809 0.967313581 1.374309914 1.205091593 1.088539543 1.09990612 1.256010733 1 18.44308409 -10.19695491 7.845349905 0.999999914 1.172076794 0.081300809 0.165819608 2.42E-07 2.48E-08 0.155615669 0.037742324 6.35E-11 10.19695491 0.17207688 KVVVVR ddPTM_HeLa_A485_30min_R1 2 KVVVVR 6 1 P40429;M0QYS1 P40429 RPL13A 60S ribosomal protein L13a 0 0 ; ; 83.229 0.021512 43273000 26744.2 41659 33587 21326 38133 34440 40103 52674 33326 33394 FALSE FALSE TRUE 32693.35502 46530.65766 46012.22897 22490.98538 34336.34463 36243.22515 31534.66644 39755.61891 40014.22252 25069.49037 1.304109279 1.856067155 1.835387489 0.897145696 1.369646695 1.445710487 1.257890207 1.585816797 1.596132268 1 14.61364505 -5.219292267 24.99995978 1.338169985 1.684275913 0.28569704 0.255462207 659.415888 391137.956 0.069324956 0.120072961 6.04E-06 5.219292267 0.346105928 KVYEDSGIPLPAES(ph)PK ddPTM_HeLa_A485_30min_R1 1 KVYEDSGIPLPAESPK 16 1 F8W038;F8W1H0;H0YIS7;Q8IXM2-2;Q8IXM2;Q8IXM2-3 F8W038 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 0 KVYEDSGIPLPAES(1)PK 84.946 0.0010217 710390000 617060 473850 330260 1106800 600560 578170 980420 736390 417260 1386700 TRUE FALSE FALSE 754322.8682 529262.6356 452436.9173 1167261.681 540766.1377 608442.0872 770945.2577 555789.1979 501000.2547 1041021.21 0.724598943 0.508407159 0.434608741 1.121265993 0.519457368 0.584466561 0.740566331 0.533888448 0.481258451 1 19.98956803 -10.19535909 4.484822115 1.000089331 0.629065135 0.25682083 0.19002654 257540881.5 40.94007422 242902.3471 0.045646692 6.38E-11 10.19535909 -0.371024196 KVYEDSGIPLPAES(ph)PK ddPTM_HeLa_A486_30min_R1 1 KVYEDSGIPLPAESPK 16 1 F8W038;F8W1H0;H0YIS7;Q8IXM2-2;Q8IXM2;Q8IXM2-3 F8W038 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 0 KVYEDSGIPLPAES(1)PK 134.29 5.98E-06 419160000 692930 710260 288360 590820 504710 762480 1111300 896280 563180 1726400 TRUE FALSE FALSE 644359.1853 653976.4109 400020.7145 1375458.818 441404.5656 668412.9699 833240.9859 692216.6097 611996.8959 1294098.203 0.497921397 0.505353001 0.30911156 1.062870511 0.341090471 0.516508692 0.643877709 0.53490269 0.472913798 1 20.30351567 -10.64825345 2.767083903 1.048196346 0.546098944 0.328116274 0.196250695 76941914.02 71727144.27 26461807.75 0.049324214 2.25E-11 10.64825345 -0.502097402 KWDGS(ph)EEDEDNSK ddPTM_HeLa_A485_30min_R1 7 KWDGSEEDEDNSK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK ;;;;;; 308.78 7.99E-68 13757600000 7462960 4790610 3012271 13460080 6968730 6906260 13021840 11885900 5208330 17369440 TRUE FALSE FALSE 9123069.705 5350830.167 4126635.394 14195370.09 6274898.773 7267861.094 10239617.51 8970864.389 6253594.057 13039558.27 0.69964561 0.410353637 0.31647049 1.088638878 0.481220195 0.557370192 0.785273342 0.687973028 0.479586342 1 23.63639166 -14 0.231681244 3.055109999 0.57185057 0.22717204 0.210230584 252.7460652 2.529759266 244.4306377 0.362270265 1.00E-14 14 -2.483259428 KWDGS(ph)EEDEDNSK ddPTM_HeLa_A486_30min_R1 7 KWDGSEEDEDNSK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK ;;;;;; 314.68 5.33E-68 10140284000 5047250 4192630 1700255 3667324 3653181 5921760 8622700 7299080 3384107 9511840 TRUE FALSE FALSE 4693463.839 3860390.73 2358639.27 8537715.608 3194964.974 5191193.459 6465209.258 5637238.822 3677444.12 7130013.352 0.65826859 0.541428261 0.330804327 1.197433327 0.44810084 0.728076261 0.906759769 0.7906351 0.515769598 1 22.76547335 -13.99999217 0.044810106 2.251819629 8.20E-07 0.146870453 0.23519606 1337.205151 4.44557039 215.4492367 56.06149871 1.00E-14 13.99999217 -2.251818809 KWDGS(ph)EEDEDNSKK ddPTM_HeLa_A485_30min_R1 5 KWDGSEEDEDNSKK 14 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(0.98)EEDEDNS(0.02)KK;KWDGS(1)EEDEDNSKK;KWDGS(0.999)EEDEDNS(0.001)KK;KWDGS(1)EEDEDNSKK;KWDGS(1)EEDEDNSKK ;;;; 215.51 1.03E-27 4083890000 1578359 873977 414557 3055870 1246130 1271614 2832590 2230330 874682 4231680 TRUE FALSE FALSE 1929459.514 976181.0076 567918.8855 3222804.44 1122060.922 1338193.743 2227384.006 1683338.07 1050222.654 3176800.054 0.607359444 0.307284371 0.178770737 1.01448136 0.353204767 0.421239524 0.701140761 0.529884803 0.330591361 1 21.59914286 -11.13723955 2.483745163 2.106613711 0.495231696 0.309708017 0.226719408 20884114.37 5456009.611 130307756.8 0.055680407 7.29E-12 11.13723955 -1.611382014 KWDGS(ph)EEDEDNSKK ddPTM_HeLa_A486_30min_R1 4 KWDGSEEDEDNSKK 14 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(1)EEDEDNSKK;KWDGS(0.994)EEDEDNS(0.006)KK;KWDGS(1)EEDEDNSKK;KWDGS(1)EEDEDNSKK ;;; 165.13 4.44E-12 6765190000 2666280 1939660 506955 2726230 1371820 3289630 5382060 4233540 1510790 7502190 TRUE FALSE FALSE 2479387.541 1785954.277 703261.5527 6346801.216 1199753.544 2883788.897 4035411.662 3269655.36 1641746.494 5623592.793 0.440890305 0.317582432 0.125055561 1.128602559 0.213342891 0.512801869 0.717586036 0.581417517 0.291939078 1 22.4230607 -14 0.198044065 3.209859201 0.407075047 0.23529474 0.27532114 212.7630454 2.100860186 187.105129 0.6738226 1.00E-14 14 -2.802784154 KWDGSEEDEDNS(ph)K ddPTM_HeLa_A486_30min_R1 1 KWDGSEEDEDNSK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(0.23)EEDEDNS(0.77)K 259.96 6.40E-41 1049400000 881690 758450 309620 604090 565950 1042000 1496200 1258900 617430 1783200 TRUE FALSE FALSE 819888.0841 698347.6598 429513.1559 1406352.049 494963.2737 913448.6343 1121834.935 972275.9516 670949.3295 1336675.113 0.61337873 0.522451307 0.321329508 1.052127054 0.370294374 0.683373712 0.839272703 0.727383896 0.501953932 1 20.35021742 -14 0.119093582 2.151305877 0.453748952 0.23323791 0.20557976 231.4376827 1.788323281 64.89155861 2.001143781 1.00E-14 14 -1.697556925 KWGLGPK(ac)ASQK ddPTM_HeLa_A486_30min_R1 1 KWGLGPKASQK 11 2 O60832;O60832-2;H7C2Q2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 1 K(0.012)WGLGPK(0.988)ASQK 60.019 0.030895 0 27107 93699 69786 33437 133600 105710 106170 112600 85194 75577 FALSE TRUE FALSE 25206.93928 86273.94999 96809.00813 77843.02581 116842.6422 92668.57498 79605.14305 86963.43804 92578.68451 56652.02728 0.444943288 1.522874893 1.708835726 1.374055432 2.062461801 1.635750377 1.405159654 1.535045474 1.634163665 1 15.78983996 -4.262635623 5.27649065 1.5768332 0.398519774 0.617799149 0.257908548 0.093753856 9.246494483 0.061313667 0.401601079 5.46E-05 4.262635623 -1.178313426 KWLT(ph)SPVR ddPTM_HeLa_A485_30min_R1 1 KWLTSPVR 8 1 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 KWLT(0.823)S(0.177)PVR 86.911 0.003884 476610000 275170 319660 287960 268990 407700 342090 396340 450340 319410 396200 TRUE FALSE FALSE 336380.6172 357041.4563 394488.387 283684.2426 367107.9565 360001.3034 311658.7212 339893.4089 383512.6572 297434.6315 1.130939647 1.200403109 1.326302808 0.953770047 1.234247521 1.210354361 1.047822574 1.142749945 1.28940149 1 18.18221311 -11.05997084 2.577163498 0.759730746 1.168341908 0.193062107 0.104576985 20967253.32 7198820.319 29677509.48 0.026300016 8.71E-12 11.05997084 0.408611162 KWLTS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 KWLTSPVR 8 1 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 KWLT(0.067)S(0.933)PVR 105.25 0.0008465 587320000 1016800 1162700 986050 852910 1342200 1125400 1444700 1530000 1094000 1331800 TRUE FALSE FALSE 1242983.652 1298667.651 1350830.928 899502.3136 1208565.855 1184324.204 1136028.043 1154765.101 1313555.765 999806.77 1.24322388 1.298918641 1.351092 0.899676158 1.208799432 1.184553095 1.1362476 1.154988279 1.313809633 1 19.93128977 KWLTS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 KWLTSPVR 8 1 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 KWLT(0.116)S(0.884)PVR;KWLT(0.045)S(0.955)PVR ; 95.498 0.0017688 913720000 1376430 1528800 1191070 550470 1710650 1468340 1709060 1665370 1194070 1449820 TRUE FALSE FALSE 1279949.365 1407652.32 1652284.202 1281521.979 1496084.326 1287191.14 1281435.111 1286201.606 1297572.949 1086775.635 1.177749412 1.295255685 1.520354476 1.179196458 1.376626672 1.184412953 1.179116526 1.183502431 1.193965808 1 20.0516227 -7.802182491 0.416980746 0.995038348 1.326331818 0.444708352 0.098969381 1.060057651 0.51446849 0.133705377 0.080510312 1.58E-08 7.802182491 0.33129347 KWNLEISLDSGHEK ddPTM_HeLa_A485_30min_R1 2 KWNLEISLDSGHEK 14 1 A0A087WXZ6;A0A0A0MRM3;Q92637-3;Q92637 A0A087WXZ6 FCGR1B High affinity immunoglobulin gamma Fc receptor IB 0 0 ; ; 65.295 0.0078877 919360000 141097 291200 196217 116953 231117 281640 331040 558920 170926 149715 FALSE FALSE TRUE 172483.5409 325253.3069 268805.8336 123341.8462 208106.18 296386.2349 260310.5997 421843.9936 205229.2804 112393.8058 1.534635647 2.893872172 2.391642775 1.097407863 1.851580507 2.637033534 2.316058236 3.753267279 1.825983905 1 16.778203 -6.259560548 24.85940481 2.479147152 1.982796644 0.024449019 0.793006926 436.4546478 5774892.814 0.265831664 0.253082905 5.50E-07 6.259560548 -0.496350507 KWPQGAVPQLPPSAPAT(ph)SEMTTTPERPR ddPTM_HeLa_A485_30min_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPS(0.028)APAT(0.213)S(0.213)EMT(0.182)T(0.182)T(0.182)PERPR 64.722 0.012605 209750000 131080 142100 132660 126560 170960 147420 163060 175910 129560 144640 TRUE FALSE FALSE 160238.2938 158717.3589 181736.4544 133473.6523 153938.6221 155138.6832 128220.8989 132767.7967 155561.5036 108583.9099 1.475709375 1.461702374 1.673695989 1.229221276 1.417692753 1.428744677 1.180846214 1.222720722 1.432638627 1 16.72845081 -10.56586307 0.062529795 7.71E-09 2.109586053 0.545922517 0.122877793 123.1108497 1.228006509 31.3251245 12.86699565 2.72E-11 10.56586307 2.109586046 KWPQGAVPQLPPSAPATSEMT(ph)TTPERPR ddPTM_HeLa_A485_30min_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPS(0.028)APAT(0.099)S(0.066)EMT(0.287)T(0.287)T(0.233)PERPR 90.03 0.002543 1253300000 266330 342130 323890 284150 380980 363120 390320 445270 317580 389420 TRUE FALSE FALSE 325574.1897 382139.1274 443710.3892 299672.395 343048.2935 382132.4017 306924.9434 336066.8343 381315.393 292344.7607 1.113665211 1.307152303 1.517764122 1.025065044 1.17343746 1.307129297 1.049873248 1.149556549 1.304334622 1 18.15731121 -13.99999999 0.120581167 0.308901243 1.31941224 0.170600535 0.140613581 273.7249838 2.133204428 46.33826703 1.371003699 1.00E-14 13.99999999 1.010510997 KWPQGAVPQLPPSAPATSEMT(ph)TTPERPR ddPTM_HeLa_A486_30min_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPSAPAT(0.003)S(0.01)EMT(0.426)T(0.349)T(0.211)PERPR 126.46 6.60E-06 2694700000 988890 1162500 839950 375960 1260600 1083300 1278900 1183700 957450 1197800 TRUE FALSE FALSE 919573.9176 1070379.266 1165201.135 875253.88 1102483.793 949653.4602 958905.6932 914197.35 1040442.537 897863.0836 1.024180562 1.192140857 1.29774924 0.974818874 1.227897453 1.05768182 1.067986546 1.01819238 1.158798659 1 19.77613594 -6.321925783 24.95831318 1.062134734 1.145281835 0.158069741 0.095488327 465.6643636 192144.1742 0.032819742 0.028944298 4.77E-07 6.321925783 0.083147101 KWPQGAVPQLPPSAPATSEMTTT(ph)PERPR ddPTM_HeLa_A485_30min_R1 2 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPSAPATS(0.001)EMT(0.242)T(0.242)T(0.515)PERPR;KWPQGAVPQLPPSAPAT(0.021)S(0.016)EMT(0.254)T(0.246)T(0.461)PERPR ; 174.05 2.41E-14 5111500000 1476460 1828700 1710040 1502700 2269690 1964820 2214930 2567600 1752540 2079760 TRUE FALSE FALSE 1804893.433 2042550.557 2342654.957 1584788.696 2043711.694 2067694.937 1741692.111 1937892.074 2104258.703 1561314.107 1.156009175 1.308225262 1.500437962 1.015035148 1.308968954 1.324329888 1.115529606 1.241192957 1.347748472 1 20.57432938 -10.69185687 2.778428145 0.964107407 1.257828002 0.263998076 0.128982196 24572167.88 22659100.88 6219398.679 0.032429627 2.03E-11 10.69185687 0.293720595 KWPQGAVPQLPPSAPATSEMTTT(ph)PERPR ddPTM_HeLa_A486_30min_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPS(0.03)APAT(0.079)S(0.049)EMT(0.163)T(0.134)T(0.543)PERPR 93.968 0.0019628 2185600000 1694400 1839500 1503400 609210 1993400 1654800 1893100 1944400 1521200 1985600 TRUE FALSE FALSE 1575631.31 1693731.321 2085556.742 1418271.668 1743369.184 1450647.601 1419426.357 1501702.566 1653058.841 1488392.836 1.058612533 1.137959872 1.401213908 0.952887997 1.171309847 0.974640274 0.953663793 1.00894235 1.11063343 1 20.50532392 -5.300348182 24.99793262 1.026032886 1.193132248 0.374306648 0.103391826 573.970867 368760.7407 0.029300534 0.043460527 5.01E-06 5.300348182 0.167099362 KWS(ph)LNTYK ddPTM_HeLa_A485_30min_R1 2 KWSLNTYK 8 1 P53367;P53367-2 P53367 ARFIP1 Arfaptin-1 1 0 KWS(1)LNTYK;KWS(0.917)LNT(0.076)Y(0.007)K ; 145.23 0.0001963 1768660000 1335720 1244560 974110 2562660 2381590 2082860 3705490 3936200 1931490 3872720 TRUE FALSE FALSE 1632846.306 1390100.466 1334473.825 2702651.627 2144470.537 2191915.329 2913781.79 2970840.778 2319122.326 2907322.176 0.561632391 0.478137744 0.459004453 0.929601696 0.737610216 0.753929285 1.002221843 1.021847803 0.797683293 1 21.47125952 -5.441285688 0.846453569 0.936818206 0.451645092 0.678857853 0.116544317 0.437941153 0.614404901 0.056177847 0.143688811 3.62E-06 5.441285688 -0.485173114 KWS(ph)LNTYK ddPTM_HeLa_A486_30min_R1 1 KWSLNTYK 8 1 P53367;P53367-2 P53367 ARFIP1 Arfaptin-1 1 0 KWS(0.998)LNT(0.002)YK 192.6 2.23E-06 1763000000 1416000 1353800 598180 529940 1336200 1683100 2068300 2080200 1245600 2404500 TRUE FALSE FALSE 1316745.712 1246519.958 829811.3158 1233727.102 1168601.336 1475456.235 1550789.464 1606583.87 1353569.611 1802397.549 0.730552321 0.691589909 0.460393056 0.684492221 0.648359368 0.818607546 0.860403669 0.891359329 0.750982829 1 20.78148583 -6.316622519 2.472258817 0.866859307 0.633180307 0.616399141 0.087924146 0.208500656 2.506361377 0.034348408 0.030622995 4.82E-07 6.316622519 -0.233679 KYAVLYQPLFDKR ddPTM_HeLa_A485_30min_R1 1 KYAVLYQPLFDKR 13 2 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;F8W543;F8VRJ2;F8VVB5 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 160.27 1.36E-06 21076000 42214 47376 36096 35219 51749 54033 64124 80874 40927 52775 FALSE FALSE TRUE 51604.35866 52916.21108 49449.41248 37142.92479 46596.68786 56862.08433 50423.38356 61039.52469 49140.6735 39619.16375 1.302510043 1.335621605 1.248118531 0.937498959 1.176114876 1.435216672 1.272701864 1.540656564 1.240325864 1 15.27391081 -6.234660643 24.47180931 1.330003848 1.195601712 0.063127559 0.166271543 1234.699267 1128332.999 0.055180734 0.055164201 5.83E-07 6.234660643 -0.134402135 KYAVLYQPLFDKR ddPTM_HeLa_A486_30min_R1 1 KYAVLYQPLFDKR 13 2 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;F8W543;F8VRJ2;F8VVB5 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 129.37 0.00017251 23216000 34023 34166 22175 13518 40216 36313 43486 40953 30627 46497 FALSE FALSE TRUE 31638.16339 31458.56173 30761.75387 31470.58716 35171.73428 31833.07126 32605.34285 31628.8959 33281.77302 34853.84856 0.907738018 0.902585024 0.882592745 0.902930048 1.009120534 0.913330165 0.935487592 0.907472122 0.95489521 1 15.08903035 -13.99999995 0.065668729 1.261375248 0.822276993 0.400231319 0.031739733 388.9578369 1.847180967 15.88222314 2.239392284 1.00E-14 13.99999995 -0.439098255 KYDEELEER ddPTM_HeLa_A485_30min_R1 1 KYDEELEER 9 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 87.363 0.021297 13770000 21963 24681 19766 23966 30534 25598 31481 33805 21794 31485 FALSE FALSE TRUE 26848.59358 27567.22825 27078.26593 25275.20189 27493.92775 26938.2717 24754.82717 25514.27075 26167.85589 23636.36894 1.135901781 1.166305549 1.145618686 1.069335225 1.163204375 1.139695855 1.047319376 1.079449674 1.107101347 1 14.5287208 -14 0.074914827 0.577861519 1.254372463 0.603811712 0.032848083 193.4534275 1.03310127 13.57357859 1.463950421 1.00E-14 14 0.676510944 KYDEELEER ddPTM_HeLa_A486_30min_R1 1 KYDEELEER 9 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 79.82 0.020214 263270000 422370 492650 375610 178240 630580 494770 613810 622380 388180 511320 FALSE FALSE TRUE 392764.0441 453610.6198 521056.2512 414951.7278 551486.7765 433730.3079 460228.2458 480677.6605 421827.7549 383282.1439 1.024738696 1.183490092 1.359458716 1.08262734 1.438853297 1.131621482 1.20075577 1.254109194 1.100567198 1 18.54804726 -7.981756538 4.043514384 1.00058 1.213663005 0.251501979 0.115984926 0.236152684 9.734231719 0.106848912 0.028090244 1.04E-08 7.981756538 0.213083004 KYDS(ph)DS(ph)DDD ddPTM_HeLa_A485_30min_R1 2 KYDSDSDDD 9 1 O14530 O14530 TXNDC9 Thioredoxin domain-containing protein 9 2 0 KY(0.101)DS(0.905)DS(0.994)DDD;KY(0.017)DS(0.983)DS(1)DDD ; 48.188 0.026429 2261290000 3453500 2821400 1645610 7224700 2598300 3329800 5011700 4843700 3087200 9196600 TRUE FALSE FALSE 4221719.161 3151338.187 2254389.619 7619367.067 2339604.129 3504143.179 3940909.353 3655774.98 3706772.723 6904056.871 0.611483833 0.45644731 0.326531148 1.103607228 0.338873821 0.507548423 0.570810674 0.529511134 0.536897768 1 22.71901292 -10.87142071 2.402826998 1.219668847 0.552307752 0.30117424 0.204023083 13942808.24 7765888.323 17457122.53 0.052456545 1.34E-11 10.87142071 -0.667361095 KYDS(ph)DS(ph)DDD ddPTM_HeLa_A486_30min_R1 1 KYDSDSDDD 9 1 O14530 O14530 TXNDC9 Thioredoxin domain-containing protein 9 2 0 KY(0.007)DS(0.993)DS(1)DDD 53.567 0.021096 1011300000 2329100 1499600 1007700 1318800 1382300 3374100 2751000 2424300 2399900 4637400 TRUE FALSE FALSE 2165842.117 1380766.235 1397908.427 3070233.048 1208919.045 2957837.847 2062670.703 1872339.812 2607925.264 3476164.856 0.623055064 0.397209653 0.402141005 0.883224236 0.347773795 0.850891132 0.593375397 0.538622272 0.750230605 1 21.72906507 -14 0.129924384 2.389541704 0.420116906 0.375751342 0.169276502 152.5681035 1.249016467 54.91071849 1.253648317 1.00E-14 14 -1.969424798 KYEDICPSTHNMDVPNIK ddPTM_HeLa_A485_30min_R1 1 KYEDICPSTHNMDVPNIK 18 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 47.752 0.026352 153660000 61941 64205 61718 58306 94584 71561 97935 106660 86038 95699 FALSE FALSE TRUE 75719.56176 71713.21624 84550.0565 61491.10914 85166.88486 75307.82331 77010.38719 80501.46776 103305.0374 71843.00051 1.053958788 0.998193502 1.176872568 0.855909535 1.18545835 1.048227702 1.071926098 1.120519288 1.437927657 1 16.13255998 -7.534039109 24.99859053 1.23905043 1.058169509 0.193801368 0.131073322 303.6823031 680215.8946 0.080800089 0.03059614 2.92E-08 7.534039109 -0.180880921 KYEDICPSTHNMDVPNIK(ac)R ddPTM_HeLa_A485_30min_R1 1 KYEDICPSTHNMDVPNIKR 19 2 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 1 KYEDICPSTHNMDVPNIK(1)R 75.358 0.0092278 10392000 6150.4 11094 17186 6445.8 15249 9326.5 16192 17250 9273.8 15891 FALSE TRUE FALSE 7518.535261 12391.3468 23543.81657 6797.917732 13730.75602 9814.821118 12732.44692 13019.41045 11134.9666 11929.66615 0.63023853 1.038700215 1.973552006 0.569833023 1.150975714 0.822723871 1.067292811 1.091347426 0.933384594 1 13.54226605 KYEDICPSTHNMDVPNIKR ddPTM_HeLa_A485_30min_R1 1 KYEDICPSTHNMDVPNIKR 19 2 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 184.8 2.91E-18 226040000 172610 281390 191640 90480 311190 286730 367360 451320 226770 202880 FALSE FALSE TRUE 211006.499 314296.1127 262535.6108 95422.69329 280206.8309 301742.7394 288870.5349 340633.0624 272280.6589 152305.7497 1.385413876 2.063586656 1.723740642 0.626520624 1.839765284 1.981164467 1.896648915 2.236508227 1.787724097 1 17.21661088 -5.956930404 24.99969008 1.870016698 1.478212613 0.104031661 0.452550318 278.8437705 161853.2282 0.140814179 0.159668177 1.10E-06 5.956930404 -0.391804085 KYEFSPQTLCCYGK(ac)QLCTIPR ddPTM_HeLa_A485_30min_R1 2 KYEFSPQTLCCYGKQLCTIPR 21 2 Q92793;Q92793-2;I3L466 Q92793 CREBBP CREB-binding protein 0 1 ; KYEFSPQTLCCYGK(1)QLCTIPR;KYEFSPQTLCCYGK(1)QLCTIPR 195.13 1.42E-27 110813000 43511 49141 47311 46976 67146 59191 71804 76165 56133 72663 FALSE TRUE FALSE 53189.87184 54887.61248 64813.30767 49542.17993 60460.70848 62290.14923 56462.48882 57485.41433 67398.37822 54549.45136 0.975076202 1.006199166 1.188156912 0.90820675 1.108365107 1.141902396 1.035069784 1.053822044 1.235546399 1 15.73527707 KYEFSPQTLCCYGK(ac)QLCTIPR ddPTM_HeLa_A486_30min_R1 2 KYEFSPQTLCCYGKQLCTIPR 21 2 Q92793;Q92793-2;I3L466 Q92793 CREBBP CREB-binding protein 0 1 ; KYEFSPQTLCCYGK(1)QLCTIPR;KYEFSPQTLCCYGK(1)QLCTIPR 207.67 3.51E-28 98675000 52358 62433 49162 20222.4 74010 61513 65294 61819 55045 70111 FALSE TRUE FALSE 48687.97458 57485.5817 68198.843 47078.76918 64726.97568 53924.15148 48956.75059 47744.1632 59816.34492 52554.74925 0.926423877 1.093822776 1.297672313 0.895804277 1.231610399 1.026056679 0.931538087 0.908465246 1.138172016 1 15.68153352 -6.513569751 24.40015781 0.985756131 1.09404837 0.110133387 0.126543167 663.7981389 1739917.797 0.045486719 0.037272314 3.06E-07 6.513569751 0.108292239 KYEMFAQTLQQSR ddPTM_HeLa_A485_30min_R1 1 KYEMFAQTLQQSR 13 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 123.29 7.89E-05 0 98515 115720 100070 110870 144390 117420 151890 154410 106090 136030 FALSE FALSE TRUE 120429.3219 129252.4474 137090.0573 116926.5474 130014.0246 123567.9296 119437.4607 116540.7054 127381.2899 102120.2244 1.179289632 1.265689026 1.342437877 1.144989134 1.273146679 1.21002407 1.16957695 1.141210823 1.247365941 1 16.63990909 -14 0.171370699 0.12328405 1.271505857 0.563773291 0.059098964 94.72812494 0.895719161 28.11944551 0.206973303 1.00E-14 14 1.148221807 KYEQGFITDPVVLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 KYEQGFITDPVVLSPK 16 1 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 KYEQGFITDPVVLS(1)PK 172.24 1.64E-12 355250000 581190 428700 272040 954260 607070 552840 943840 834960 440860 1254800 TRUE FALSE FALSE 710473.7104 478832.7358 372678.9165 1006388.807 546627.9792 581785.8475 742180.8735 630184.7508 529336.5582 942001.4529 0.754217213 0.508314222 0.395624567 1.068351651 0.580283584 0.617606104 0.78787657 0.668984903 0.561927539 1 19.84536976 -11.17934601 2.315041397 1.883313412 0.660488253 0.255372287 0.173992312 32706020.58 6900291.659 151480574.1 0.04299091 6.62E-12 11.17934601 -1.222825159 KYEQGFITDPVVLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 KYEQGFITDPVVLSPK 16 1 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 KYEQGFITDPVVLS(1)PK 125.58 1.32E-05 442070000 556130 565040 239310 426740 453170 678760 894920 760460 399030 1117400 TRUE FALSE FALSE 517148.1589 520264.1726 331977.2409 993472.2862 396329.193 595021.4923 671001.5505 587319.8587 433618.2417 837595.7669 0.617419738 0.621139926 0.396345414 1.186099937 0.47317478 0.710392191 0.801104276 0.701197262 0.517693927 1 19.67589463 -11.50744398 2.196939143 5.229461036 0.675386951 0.186224082 0.206989889 6004980.9 378558.9797 127421244.2 0.050555962 3.11E-12 11.50744398 -4.554074085 KYES(ph)DEDS(ph)LGSSGR ddPTM_HeLa_A485_30min_R1 4 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 KY(0.001)ES(0.999)DEDS(1)LGSSGR;KYES(1)DEDS(0.539)LGS(0.072)S(0.389)GR;KY(0.001)ES(0.999)DEDS(0.977)LGS(0.013)S(0.01)GR;KY(0.002)ES(0.998)DEDS(0.788)LGS(0.116)S(0.097)GR ;;; 183.88 9.62E-18 915700000 1585360 1473440 1151189 2158530 2082390 1722560 2533600 2610580 1402690 2927880 TRUE FALSE FALSE 1938017.863 1645745.991 1577061.716 2276445.028 1875059.94 1812750.578 1992275.662 1970331.162 1684197.017 2198013.4 0.881713398 0.748742474 0.717494132 1.035682962 0.853070295 0.82472226 0.906398324 0.896414536 0.76623601 1 21.06776875 -14 0.193951462 1.624578887 0.824723944 0.19535211 0.088388419 241.0760447 2.369534692 58.80992468 0.236192007 1.00E-14 14 -0.799854943 KYES(ph)DEDS(ph)LGSSGR ddPTM_HeLa_A486_30min_R1 2 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 KYES(1)DEDS(0.877)LGS(0.071)S(0.052)GR;KYES(1)DEDS(0.998)LGS(0.001)S(0.001)GR ; 155.2 1.32E-08 1726070000 2483400 2421400 1344170 1265010 2376900 2825400 3369900 3118300 1933980 3398200 TRUE FALSE FALSE 2309326.484 2229519.445 1864668.622 2945007.21 2078767.038 2476830.875 2526715.377 2408331.162 2101618.944 2547268.601 0.90658931 0.875258873 0.732026698 1.156143176 0.81607689 0.972347743 0.991931269 0.945456306 0.825048031 1 21.28051966 KYES(ph)DEDSLGS(ph)SGR ddPTM_HeLa_A486_30min_R1 1 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 KYES(1)DEDS(0.166)LGS(0.713)S(0.122)GR 178.71 1.34E-17 194580000 420880 421080 252120 222420 414290 445100 562080 504000 327150 582540 TRUE FALSE FALSE 391378.4854 387712.0873 349747.616 517805.0005 362325.8851 390188.0874 421441.6389 389250.2022 355507.6254 436668.1923 0.896283476 0.887887174 0.800945941 1.185808835 0.829751036 0.893557384 0.965130152 0.891409562 0.814136756 1 18.73617792 -4.755984471 0.004654159 1.815569601 4.22E-05 0.015979272 0.106656821 230251.3148 197.426545 37414.33531 39617.34821 1.75E-05 4.755984471 -1.815527407 KYES(ph)DEDSLGSSGR ddPTM_HeLa_A485_30min_R1 3 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 KY(0.006)ES(0.985)DEDS(0.004)LGS(0.003)S(0.001)GR;KYES(0.847)DEDS(0.153)LGSSGR;KYES(0.973)DEDS(0.001)LGS(0.009)S(0.017)GR ;; 199.33 2.45E-21 1062980000 718480 792510 679650 1060980 1130150 947720 1311760 1317210 823140 1589260 TRUE FALSE FALSE 878303.3973 885187.1506 931080.8176 1118938.651 1017628.298 997341.1537 1031491.76 994162.1822 988336.6477 1193086.73 0.736160562 0.741930262 0.780396592 0.937851895 0.852937404 0.83593349 0.864557231 0.833268996 0.828386255 1 20.18626749 -1.000000027 0.040881321 1.345144938 1.33E-12 0.582489163 0.050084802 622.0202978 1.939311105 17.26115456 57.45165576 0.099999994 1.000000027 -1.345144938 KYES(ph)DEDSLGSSGR ddPTM_HeLa_A486_30min_R1 2 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 KYES(0.994)DEDS(0.006)LGSSGR;KYES(0.998)DEDS(0.002)LGSSGR ; 147 4.49E-08 2054200000 1741870 1608090 899370 603220 1686820 1636960 1923180 1954350 1324850 2174390 TRUE FALSE FALSE 1619773.908 1480659.092 1247630.15 1404326.645 1475243.307 1435008.519 1441980.023 1509387.168 1439689.065 1629908.591 0.993782054 0.908430755 0.765460196 0.861598407 0.905108001 0.880422698 0.884699934 0.92605633 0.883294359 1 20.63635963 -9.093924152 0.565034638 1.009563382 0.881215505 0.268721297 0.054108272 7.11962941 2.530504703 0.212740589 0.02516525 8.06E-10 9.093924152 -0.128347877 KYESDEDS(ph)LGSSGR ddPTM_HeLa_A486_30min_R1 1 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 KYES(0.045)DEDS(0.955)LGSSGR 151.07 1.40E-07 308580000 284310 275260 181100 130660 282910 317520 365190 353220 246670 441960 TRUE FALSE FALSE 264381.3372 253447.3951 251226.77 304183.0832 247424.7898 278347.6107 273815.5994 272799.5167 268051.5542 331290.3393 0.798035155 0.765031047 0.758328089 0.918176738 0.746851811 0.840192356 0.826512478 0.823445432 0.809113706 1 18.33773661 -14 0.245309992 2.11855838 0.792061243 0.609555332 0.046147656 117.7544558 1.172382355 65.87271035 0.068411946 1.00E-14 14 -1.326497137 KYGGSVGSQPPPVAPEPGPVPS(ph)SPSQEPPTKR ddPTM_HeLa_A486_30min_R1 2 KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 32 2 A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 0 KYGGSVGSQPPPVAPEPGPVPS(0.533)S(0.385)PS(0.077)QEPPT(0.004)KR;KYGGSVGSQPPPVAPEPGPVPS(0.521)S(0.376)PS(0.103)QEPPTKR ; 181.62 3.55E-21 1823430000 1504000 1279610 797500 455820 1375270 1325390 1522340 1512120 986970 1724120 TRUE FALSE FALSE 1398577.367 1178209.043 1106313.358 1061171.996 1202770.813 1161876.857 1141434.43 1167843.285 1072521.354 1292389.13 1.082164291 0.911651929 0.856021869 0.821093254 0.930656862 0.899014724 0.883197176 0.903631312 0.829874942 1 20.30160909 -4.271376001 3.753745461 0.885836312 1.100679062 0.577105364 0.048776112 0.163918717 4.458298845 0.011687982 0.096424366 5.35E-05 4.271376001 0.21484275 KYHNVGLSK ddPTM_HeLa_A485_30min_R1 2 KYHNVGLSK 9 1 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 ; ; 99.815 0.0029882 27743000 40664.1 47087 40922 39239 56835 53641 62032 72447 45310 54901 FALSE FALSE TRUE 49709.68876 52593.41505 56060.75071 41382.52721 51176.30784 56449.55982 48778.35645 54679.25966 54403.30139 41215.19108 1.206101135 1.276068694 1.360196307 1.00406006 1.241685565 1.369629943 1.183504314 1.32667733 1.319981783 1 15.33088856 -10.05187319 4.829996113 0.999994282 1.253692283 0.357203583 0.102302563 7.41E-06 1.45E-06 0.099745067 0.024191095 8.87E-11 10.05187319 0.253698 KYHNVGLSK ddPTM_HeLa_A486_30min_R1 1 KYHNVGLSK 9 1 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 54.608 0.036057 5413100 6907.9 11814 8627.6 4442 13893 12433 13000 13573 9947.7 10042 FALSE FALSE TRUE 6423.691882 10877.81561 11968.43778 10341.20049 12150.41039 10899.14287 9747.2625 10482.7242 10809.97465 7527.417838 0.853372567 1.445092573 1.589979198 1.373804498 1.614153838 1.44792585 1.294901215 1.392605595 1.436080058 1 12.87793934 -10.17771044 4.22628874 0.999889521 1.397123792 0.246962366 0.199342355 98289543.86 31.96389349 127160.1616 0.049359174 6.64E-11 10.17771044 0.397234271 KYIEIDS(ph)DEEPR ddPTM_HeLa_A485_30min_R1 3 KYIEIDSDEEPR 12 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 KYIEIDS(1)DEEPR;KYIEIDS(1)DEEPR;KYIEIDS(1)DEEPR ;; 165.16 1.39E-10 1282100000 2502330 3937040 2033110 1732280 2164960 2959430 2942100 3903090 1919680 2152460 TRUE FALSE FALSE 3058964.676 4397442.58 2785241.994 1826910.07 1949408.981 3114381.179 2313496.3 2945851.058 2304942.168 1615891.335 1.89305098 2.721372709 1.723656742 1.130589682 1.206398561 1.927345677 1.431715271 1.823050222 1.426421516 1 20.62389875 -4.946708564 6.778002168 1.464402088 2.297950495 0.529203929 0.329151777 0.154588052 15.19885913 0.084395481 0.17729164 1.13E-05 4.946708564 0.833548407 KYIEIDS(ph)DEEPR ddPTM_HeLa_A486_30min_R1 4 KYIEIDSDEEPR 12 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 KYIEIDS(1)DEEPR;KYIEIDS(1)DEEPR;KYIEIDS(1)DEEPR;KYIEIDS(1)DEEPR ;;; 194.58 6.90E-14 1143390000 1844303 1695388 966291 434452 1166750 1215128 1499900 1289020 1211546 2022820 TRUE FALSE FALSE 1715026.884 1561039.28 1340464.753 1011426.212 1020405.335 1065217.862 1124609.156 995538.2851 1316563.783 1516292.706 1.131065841 1.029510512 0.88404089 0.667038896 0.672960657 0.702514665 0.741683417 0.656560756 0.868278122 1 20.53211685 -4.84003893 2.275641835 0.738133379 1.109888751 0.603264339 0.103266729 0.181652758 1.848491299 0.027244991 0.084151045 1.45E-05 4.84003893 0.371755372 KYIEIDS(ph)DEEPRGELLSLR ddPTM_HeLa_A485_30min_R1 4 KYIEIDSDEEPRGELLSLR 19 2 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR ;;; 292.1 3.01E-79 2891510000 949430 1296150 1232200 1188340 2444230 1808170 2435710 3393640 1453830 1796150 TRUE FALSE FALSE 1160627.428 1447723.467 1688042.056 1253256.005 2200873.879 1902842.985 1915300.661 2561344.469 1745600.346 1348402.861 0.860742336 1.073657962 1.251882583 0.929437367 1.632207957 1.411182845 1.420421683 1.89953948 1.294568854 1 20.36282016 -5.759183265 24.99999994 1.485245338 1.048050058 0.413601339 0.237929072 55.00773245 609534.2105 0.068866283 0.084647866 1.74E-06 5.759183265 -0.43719528 KYIEIDS(ph)DEEPRGELLSLR ddPTM_HeLa_A486_30min_R1 4 KYIEIDSDEEPRGELLSLR 19 2 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR;KYIEIDS(1)DEEPRGELLSLR ;;; 278.97 6.65E-70 2751450000 1369730 1483530 1411360 737296 2432930 1591380 2133150 2336030 1247280 1729800 TRUE FALSE FALSE 1273719 1365969.68 1957876.39 1716462.349 2127769.233 1395051.716 1599413.308 1804166.964 1355395.235 1296646.821 0.982317606 1.053463177 1.509953488 1.323770144 1.640978252 1.075891826 1.233499579 1.3914097 1.045307953 1 20.30635414 -7.859334283 6.355731716 1.005977161 1.281962089 0.212824363 0.195436096 0.344307437 18.09447666 0.194892525 0.050659396 1.38E-08 7.859334283 0.275984928 KYPS(ph)PQK ddPTM_HeLa_A485_30min_R1 5 KYPSPQK 7 1 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK ;;;; 78.655 0.0081318 10098890000 7173460 5268220 3854830 11136200 7764900 7225500 11570300 10436800 5875270 14755300 TRUE FALSE FALSE 8769171.429 5884292.502 5280892.03 11744542.41 6991799.292 7603816.007 9098210.884 7877158.436 7054382.798 11077075.26 0.791650433 0.531213553 0.476740647 1.060256623 0.631195431 0.686446181 0.821354976 0.711122589 0.636845253 1 23.40107367 -14 0.281227541 3.145178546 0.686468267 0.238522025 0.155671988 349.2535427 3.345459626 438.133836 0.180151279 1.00E-14 14 -2.458710279 KYPS(ph)PQK ddPTM_HeLa_A486_30min_R1 6 KYPSPQK 7 1 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK;KYPS(1)PQK ;;;;; 71.349 0.011742 10598950000 17191320 16229910 7085820 9141210 13839600 19426300 24550800 23256730 13024900 27493500 TRUE FALSE FALSE 15986297.24 14943792.82 9829639.269 21281198.85 12103708.32 17029680.62 18407930.17 17961680.27 14153908.82 20608948.65 0.775696884 0.725111847 0.476959763 1.032619335 0.587303531 0.826324569 0.893200836 0.871547626 0.686784613 1 24.29676757 -14 0.080561143 1.775777563 0.533717038 0.203916621 0.148141322 388.4045188 2.208990917 53.37102459 4.892521381 1.00E-14 14 -1.242060524 KYQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_HeLa_A485_30min_R1 4 KYQEDSDPERSDYEEQQLQK 20 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 KYQEDS(1)DPERS(1)DYEEQQLQK;KY(0.002)QEDS(0.998)DPERS(1)DYEEQQLQK;KY(0.001)QEDS(0.999)DPERS(0.993)DY(0.007)EEQQLQK;KYQEDS(1)DPERS(1)DYEEQQLQK ;;; 208.96 8.47E-27 2710420000 1902400 1436130 958180 2394720 1486330 1792760 2459100 2070170 1285650 3009240 TRUE FALSE FALSE 2325582.317 1604072.911 1312650.655 2525537.49 1338345.766 1886626.141 1933693.196 1562457.562 1543668.162 2259091.849 1.029432388 0.7100521 0.581052362 1.117943695 0.592426451 0.835125912 0.855960415 0.691630826 0.68331359 1 21.1073115 KYQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_HeLa_A486_30min_R1 1 KYQEDSDPERSDYEEQQLQK 20 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 KYQEDS(1)DPERS(0.998)DY(0.002)EEQQLQK 101.45 0.0001018 761410000 391900 386550 154010 181280 266130 393370 470530 412870 245500 539960 TRUE FALSE FALSE 364429.8338 355918.3702 213646.7965 422029.0014 232749.4938 344840.0089 352798.4172 318868.5139 266780.1377 404750.5015 0.900381426 0.879352512 0.527848133 1.042689261 0.575044362 0.851981672 0.871644176 0.787814994 0.659122439 1 18.62667334 KYQEDS(ph)DPERS(ph)DYEEQQLQKEEEAR ddPTM_HeLa_A486_30min_R1 1 KYQEDSDPERSDYEEQQLQKEEEAR 25 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 KYQEDS(1)DPERS(1)DYEEQQLQKEEEAR 143.47 3.16E-09 774610000 226780 238600 170730 227240 348320 409680 555930 585580 207330 421530 TRUE FALSE FALSE 210883.8931 219692.467 236841.2283 529026.2041 304630.4576 359137.8469 416830.434 452256.2171 225301.5313 315976.1443 0.667404476 0.695281815 0.749554144 1.674259952 0.964093218 1.136597979 1.319183241 1.431298613 0.713033358 1 18.26945612 -5.036193229 24.39075718 1.191938044 0.691611683 0.428529784 0.250576216 360.8786464 243197.3306 0.065222652 0.11302913 9.20E-06 5.036193229 -0.50032636 KYQEDS(ph)DPERSDYEEQQLQK ddPTM_HeLa_A485_30min_R1 1 KYQEDSDPERSDYEEQQLQK 20 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KYQEDS(1)DPERSDYEEQQLQK 186.13 2.06E-19 532710000 332880 311850 163650 416320 286230 356960 418770 445520 293920 501440 TRUE FALSE FALSE 406928.0076 348318.1448 224190.945 439062.5074 257731.9362 375649.8736 329296.3685 336255.5215 352907.048 376440.2363 1.080989672 0.925294671 0.595555213 1.166353819 0.684655654 0.99790043 0.874764004 0.893250745 0.937484928 1 18.52206132 -8.055629664 2.858146372 0.999838518 0.896736888 0.033203847 0.15934601 1.186473699 23.23361028 0.143850877 0.038607893 8.80E-09 8.055629664 -0.10310163 KYQEDS(ph)DPERSDYEEQQLQK ddPTM_HeLa_A486_30min_R1 2 KYQEDSDPERSDYEEQQLQK 20 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KYQEDS(0.998)DPERS(0.002)DYEEQQLQK;KYQEDS(1)DPERSDYEEQQLQK ; 121.35 1.82E-06 1381780000 904180 769560 300360 265260 542290 778170 869630 777690 554480 1068510 TRUE FALSE FALSE 840801.6512 708577.2629 416667.4359 617538.6855 474270.9315 682167.2973 652039.376 600626.9639 602542.7728 800948.1412 1.049757916 0.884673085 0.520217745 0.771009574 0.592136878 0.851699707 0.814084386 0.749894947 0.752286873 1 19.61134931 -8.906271494 12.23729012 0.999999236 0.768852931 0.186187986 0.139613001 0 0 0.138428209 0.033573772 1.24E-09 8.906271494 -0.231146305 KYQEDS(ph)DPERSDYEEQQLQKEEEAR ddPTM_HeLa_A485_30min_R1 1 KYQEDSDPERSDYEEQQLQKEEEAR 25 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KY(0.018)QEDS(0.981)DPERSDYEEQQLQKEEEAR 61.89 0.019871 163130000 88285 64755 78454 193120 210690 132120 244200 265330 131160 298330 TRUE FALSE FALSE 107923.6937 72327.53396 107477.3993 203669.6566 189712.9638 139037.5989 192024.6751 200257.4015 157482.6089 223961.8214 0.481884336 0.32294582 0.479891611 0.909394536 0.84707725 0.620809378 0.857399149 0.894158657 0.703167209 1 17.77289329 -5.164943117 4.839463143 0.820946674 0.404131863 0.749240731 0.107524507 0.107539798 4.102915759 0.028993853 0.051630424 6.84E-06 5.164943117 -0.416814811 KYRPLFDYFLK ddPTM_HeLa_A485_30min_R1 2 KYRPLFDYFLK 11 2 A0A0A0MSX9;P41252;J3KR24;Q5TCD1 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 84.687 0.016643 42492000 79109 85927 69554 75758 91563 88854 121564 130845 60743 112741 FALSE FALSE TRUE 96706.52413 95975.41518 95284.91898 79896.46771 82446.66622 93506.25805 95590.85831 98755.05859 72933.56293 84636.74354 1.142606864 1.133968666 1.125810316 0.943992696 0.9741238 1.104795082 1.12942505 1.166810707 0.861724588 1 16.3689965 -5.039993581 23.18965779 1.037983542 1.136188265 0.24030064 0.086539129 350.2121759 203064.8197 0.024411714 0.04229552 9.12E-06 5.039993581 0.098204723 KYRPLFDYFLK ddPTM_HeLa_A486_30min_R1 2 KYRPLFDYFLK 11 2 A0A0A0MSX9;P41252;J3KR24;Q5TCD1 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 107.06 0.0027144 38484000 232640 193000 113293 79421 197046 186570 239830 203232 145167 243780 FALSE FALSE TRUE 216333.1374 177705.9771 157163.0837 184896.1017 172330.6533 163552.8903 179821.9973 156960.5101 157750.1924 182735.9013 1.183856789 0.972474352 0.860055865 1.011821434 0.943058546 0.895023305 0.984054015 0.858947306 0.863268747 1 17.47940058 -4.286611314 3.540461739 0.925926521 1.207769585 0.65813743 0.055197547 0.152543683 3.424632921 0.013795036 0.110222186 5.17E-05 4.286611314 0.281843064 KYS(ph)SCSTIFLDDSTVSQPNLK ddPTM_HeLa_A485_30min_R1 1 KYSSCSTIFLDDSTVSQPNLK 21 1 Q8ND76-2;Q8ND76;Q8ND76-3;R4GNF3 Q8ND76-2 CCNY Cyclin-Y 1 0 KY(0.001)S(0.385)S(0.385)CS(0.115)T(0.115)IFLDDSTVSQPNLK 131.04 6.36E-07 159830000 135590 108910 79900 167500 103560 135390 180540 158260 134200 297200 TRUE FALSE FALSE 165751.5277 121646.0771 109458.3349 176650.1009 93249.20278 142478.811 141966.1541 119446.4869 161132.709 223113.5096 0.742902248 0.54522058 0.490594833 0.791749909 0.417945121 0.638593384 0.636295643 0.535361965 0.722200594 1 17.76741835 -8.080893352 4.234980001 0.999895907 0.597925658 0.567313275 0.106083945 0.256888899 11.04820504 0.096266157 0.025225885 8.30E-09 8.080893352 -0.401970249 KYSDVEVPASVTGYSFASDGDSGTCS(ph)PLR ddPTM_HeLa_A485_30min_R1 3 KYSDVEVPASVTGYSFASDGDSGTCSPLR 29 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 KYSDVEVPASVTGYSFASDGDSGT(0.013)CS(0.987)PLR;KYSDVEVPASVTGYSFASDGDSGT(0.001)CS(0.999)PLR;KYSDVEVPASVTGYSFASDGDSGTCS(1)PLR ;; 274.55 2.41E-77 1207670000 600710 719560 751490 645140 977960 749340 859320 934680 746230 949580 TRUE FALSE FALSE 734335.8671 803706.2827 1029497.423 680382.3646 880590.8686 788574.2837 675719.262 705448.2645 895991.5162 712867.1817 1.030115968 1.127427806 1.444164424 0.954430758 1.235280416 1.106200852 0.947889424 0.989592848 1.256884226 1 19.44327378 -6.524524561 24.95481358 1.044770176 1.162088124 0.114382704 0.143558656 116.3101747 1763489.692 0.053942283 0.042108498 2.99E-07 6.524524561 0.117317948 KYSDVEVPASVTGYSFASDGDSGTCS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 KYSDVEVPASVTGYSFASDGDSGTCSPLR 29 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 KYSDVEVPASVTGYSFASDGDSGT(0.001)CS(0.999)PLR;KYSDVEVPASVTGYSFASDGDSGTCS(1)PLR ; 319.76 2.70E-109 1058900000 936480 1071360 782790 382770 1209360 988770 1126370 1124470 857200 1034100 TRUE FALSE FALSE 870837.588 986461.5318 1085907.252 891107.9041 1057670.792 866785.6105 844540.3125 868452.728 931502.7862 775154.6291 1.123437254 1.272599678 1.40089114 1.149587283 1.364464266 1.118209939 1.089512054 1.120360629 1.201699314 1 19.5641246 -6.344185292 9.375599567 1.11203789 1.264140838 0.423085238 0.091078319 0.446081479 47.96875749 0.031231672 0.02752714 4.53E-07 6.344185292 0.152102948 KYSQFINFPIYVWSSK ddPTM_HeLa_A485_30min_R1 2 KYSQFINFPIYVWSSK 16 1 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 216.93 1.49E-24 557640000 782310 870930 674720 741110 1005360 1052000 1485830 1727950 520470 1070300 FALSE FALSE TRUE 956332.1606 972777.6874 924327.0054 781594.9627 905262.8284 1107081.093 1168370.282 1304167.553 624923.555 803493.9074 1.190217065 1.210684584 1.150384585 0.972745351 1.126657987 1.377833837 1.454112186 1.62312065 0.777757677 1 19.61592756 -6.241706354 21.9286777 1.298481594 1.126993418 0.036897131 0.230541541 388.0972105 431277.9678 0.07516201 0.07498954 5.73E-07 6.241706354 -0.171488176 KYSQFINFPIYVWSSK ddPTM_HeLa_A486_30min_R1 2 KYSQFINFPIYVWSSK 16 1 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 182.7 2.20E-13 359640000 559560 714590 558090 265300 851590 795920 1076340 939620 695700 1016490 FALSE FALSE TRUE 520337.7336 657963.2859 774197.3942 617631.8075 744775.6414 697727.4827 807028.3476 725689.0378 756003.8362 761954.2878 0.682898885 0.863520682 1.016068033 0.810589057 0.977454492 0.915707798 1.059155858 0.952404953 0.99219054 1 19.53934492 -3.628641261 1.024690995 0.967420906 2.31E-22 0.639025441 0.064559199 3.758459921 1.275178174 0.020230514 5.437908706 0.000235157 3.628641261 -0.967420906 KYSSCS(ph)TIFLDDSTVSQPNLK ddPTM_HeLa_A485_30min_R1 1 KYSSCSTIFLDDSTVSQPNLK 21 1 Q8ND76-2;Q8ND76;Q8ND76-3;R4GNF3 Q8ND76-2 CCNY Cyclin-Y 1 0 KYS(0.214)S(0.214)CS(0.286)T(0.286)IFLDDSTVSQPNLK 121.86 5.23E-06 125500000 130700 93572 55944 140350 110820 119160 174800 152120 96137 261030 TRUE FALSE FALSE 159773.7641 104514.4314 76640.01362 148016.9651 99786.37169 125399.0333 137452.552 114812.3315 115430.8141 195960.0249 0.815338558 0.533345673 0.391100244 0.755342653 0.509217999 0.639921501 0.701431591 0.585896698 0.589052865 1 17.58019985 -10.84934668 2.512614012 1.163882548 0.608182341 0.493766608 0.117326189 15986829.18 9705031.684 15709446.09 0.030309699 1.41E-11 10.84934668 -0.555700206 KYSSCS(ph)TIFLDDSTVSQPNLK ddPTM_HeLa_A486_30min_R1 1 KYSSCSTIFLDDSTVSQPNLK 21 1 Q8ND76-2;Q8ND76;Q8ND76-3;R4GNF3 Q8ND76-2 CCNY Cyclin-Y 1 0 KY(0.03)S(0.209)S(0.209)CS(0.275)T(0.275)IFLDDSTVSQPNLK 82.486 0.0014182 95962000 129050 144790 80993 60844 189190 163960 171110 156110 154230 247690 TRUE FALSE FALSE 120004.2614 133316.3131 112355.6587 141647.9069 165460.0261 143732.2822 128296.4682 120567.1609 167598.7806 185666.8118 0.646342016 0.718040622 0.605146701 0.762914521 0.89116641 0.774140951 0.691003777 0.649373788 0.902685725 1 17.50235643 -14 0.136923343 1.910333984 0.635544313 0.511090123 0.085882612 130.4152106 1.102728325 32.35508245 0.608947311 1.00E-14 14 -1.274789671 KYT(ph)LENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVR ddPTM_HeLa_A486_30min_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVR 47 3 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KY(0.187)T(0.203)LENKEEGS(0.203)LS(0.203)DT(0.203)EADAVS(0.002)GQLPDPTTNPSAGKDGPSLLVVEQVR 77.335 9.99E-05 398480000 235340 159810 69391 168160 231800 241590 386570 390160 128190 426080 TRUE FALSE FALSE 218843.8813 147146.0736 96261.05356 391484.9783 202725.4826 211785.0821 289846.0973 301329.0851 139301.6124 319386.7947 0.685200155 0.460714331 0.301393342 1.225739401 0.634733451 0.663099056 0.907508081 0.943461314 0.436153325 1 18.28494514 -5.232067979 24.97994705 0.815870358 0.4802638 0.334883921 0.223893701 836.1224331 711108.9818 0.059240666 0.102586884 5.86E-06 5.232067979 -0.335606558 KYTLENKEEGS(ph)LSDTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A485_30min_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KYT(0.001)LENKEEGS(0.49)LS(0.49)DT(0.019)EADAVSGQLPDPTTNPSAGK 128.38 1.40E-06 882310000 327210 160780 107620 578870 326310 267200 494510 382690 244370 817380 TRUE FALSE FALSE 399996.7356 179581.8224 147433.1164 610492.2023 293821.4307 281190.1788 388853.8987 288834.6775 293412.8175 613622.2088 0.651861569 0.29265861 0.240266917 0.994899131 0.478831155 0.458246417 0.633702453 0.470704406 0.478165251 1 19.22699117 -10.4832633 2.793960044 1.017288661 0.519626961 0.341885284 0.198867764 30212757.21 32350185.79 4026419.796 0.051192788 3.29E-11 10.4832633 -0.4976617 KYTLENKEEGS(ph)LSDTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A486_30min_R1 4 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KY(0.004)T(0.011)LENKEEGS(0.328)LS(0.328)DT(0.328)EADAVSGQLPDPTTNPSAGK;KY(0.039)T(0.202)LENKEEGS(0.251)LS(0.251)DT(0.251)EADAVS(0.005)GQLPDPTTNPSAGK;KYTLENKEEGS(0.482)LS(0.482)DT(0.036)EADAVSGQLPDPTTNPSAGK;KY(0.009)T(0.059)LENKEEGS(0.309)LS(0.309)DT(0.309)EADAVS(0.004)GQLPDPTTNPSAGK ;;; 291.98 7.20E-94 6200650000 1606934 1518347 652421 1199914 1466754 2377721 3026991 2934698 1426379 3108899 TRUE FALSE FALSE 1494296.225 1398027.654 905055.8836 2793460.432 1282780.036 2084381.958 2269605.836 2266531.329 1550018.68 2330410.455 0.641215895 0.599906189 0.388367586 1.198698893 0.550452404 0.894426968 0.973908193 0.972588895 0.665126899 1 21.15215265 -5.243628368 24.93408911 0.881540988 0.548837526 0.441401024 0.180265454 765.9637575 1072290.691 0.047196393 0.081516814 5.71E-06 5.243628368 -0.332703462 KYTLENKEEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_A485_30min_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KYTLENKEEGS(0.167)LS(0.812)DT(0.021)EADAVSGQLPDPTTNPSAGK 302.61 2.41E-94 3632800000 2323500 1125600 905710 4339000 2441200 2230500 4131700 2943600 1748600 6091000 TRUE FALSE FALSE 2840354.559 1257229.129 1240769.819 4576028.583 2198145.556 2347285.531 3248928.542 2221677.485 2099527.981 4572625.797 0.621164881 0.274946865 0.271347334 1.000744165 0.480718444 0.513334271 0.710517039 0.485864705 0.459151497 1 22.12459143 -11.21851471 2.230246681 2.428371865 0.535024714 0.32487104 0.200965584 10095290.65 1745685.515 72803818.35 0.055625606 6.05E-12 11.21851471 -1.89334715 KYTLENKEEGSLSDTEADAVS(ph)GQLPDPTTNPSAGK ddPTM_HeLa_A485_30min_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KY(0.036)T(0.043)LENKEEGS(0.224)LS(0.224)DT(0.224)EADAVS(0.249)GQLPDPTTNPSAGK 47.006 0.014837 16291000 16125 8179 5478.5 28445 17170 14965 31632 21785 10579 38668 TRUE FALSE FALSE 19711.95062 9135.462902 7505.225129 29998.87832 15460.49451 15748.54426 24873.56479 16442.19459 12702.10826 29028.77923 0.679048556 0.314703654 0.25854429 1.033418529 0.532591963 0.542514865 0.856858795 0.566410129 0.437569495 1 14.82519628 -14 0.195302008 2.759812899 0.514030687 0.229509042 0.223533196 219.2240673 2.158182005 151.5750357 0.58722491 1.00E-14 14 -2.245782212 KYTLENKEEGSLSDTEADAVS(ph)GQLPDPTTNPSAGK ddPTM_HeLa_A486_30min_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KY(0.156)T(0.165)LENKEEGS(0.165)LS(0.165)DT(0.165)EADAVS(0.184)GQLPDPTTNPSAGK 47.96 0.012998 19139000 12881 13800 5130.8 7640.7 12784 24884 24413 23924 13097 25383 TRUE FALSE FALSE 11978.10842 12706.43774 7117.583168 17787.93574 11180.51151 21814.06508 18304.60919 18477.02746 14232.25851 19026.93158 0.629534424 0.667813288 0.374079401 0.934881994 0.587615058 1.146483603 0.962036843 0.971098644 0.748005975 1 14.2157553 -5.795079325 1.4784763 0.951562609 0.588321091 0.458277716 0.166131348 0.35046458 1.595626681 0.061044932 0.081484236 1.60E-06 5.795079325 -0.363241518 KYVATLGVEVHPLVFHTNR ddPTM_HeLa_A485_30min_R1 2 KYVATLGVEVHPLVFHTNR 19 1 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 268.25 1.44E-58 239510000 349440 406310 335220 347010 326200 405690 517660 562420 236820 522610 FALSE FALSE TRUE 427171.7224 453824.4201 459231.8277 365966.2776 293722.3826 426931.3011 407057.7121 424485.6132 284347.6018 392332.9449 1.088799011 1.156732887 1.170515588 0.932795174 0.748655922 1.088186212 1.037531304 1.081952507 0.72476096 1 18.58171896 -5.263801426 24.94403211 0.949915503 1.140487541 0.356532443 0.119192257 232.9071209 2459587.832 0.033966163 0.053219239 5.45E-06 5.263801426 0.190572038 KYVATLGVEVHPLVFHTNR ddPTM_HeLa_A486_30min_R1 2 KYVATLGVEVHPLVFHTNR 19 1 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 315.44 3.76E-87 232830000 481290 261590 358610 185675 499570 430940 487440 417260 360690 615720 FALSE FALSE TRUE 447554.0564 240860.6557 497473.3959 432260.7835 436909.2723 377775.0043 365477.3564 322259.0067 391954.8996 461539.7043 0.969697844 0.521863349 1.077856122 0.936562509 0.946634208 0.818510305 0.791865473 0.698225968 0.849233329 1 18.81609524 -6.458552696 12.95747543 0.80904101 0.882984116 0.024882651 0.152800621 6.040467024 1212.595408 0.053799815 0.047430023 3.48E-07 6.458552696 0.073943106 KYVIS(ph)DEEEEDDD ddPTM_HeLa_A485_30min_R1 6 KYVISDEEEEDDD 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD ;;;;; 127.71 6.96E-05 9812430000 9694790 10642170 8804720 11767960 13764320 11892290 15573350 17401190 10367880 15346180 TRUE FALSE FALSE 11851362.59 11886679.21 12061952.32 12410813.86 12393895.97 12514951.92 12245976.55 13133520.87 12448618.42 11520659.75 1.0287052 1.031770703 1.046984512 1.077265897 1.075797414 1.086305141 1.062957922 1.139997288 1.080547354 1 23.45772 -5.121861474 1.864183764 1.081567229 1.028596371 0.225440822 0.032365079 0.44542054 2.997293301 0.009426703 0.022525478 7.55E-06 5.121861474 -0.052970858 KYVIS(ph)DEEEEDDD ddPTM_HeLa_A486_30min_R1 6 KYVISDEEEEDDD 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD;KYVIS(1)DEEEEDDD ;;;;; 145.43 2.45E-07 7993640000 10270490 10476740 7193830 4293950 11234490 10253830 12696160 13056780 8303600 12368740 TRUE FALSE FALSE 9550581.688 9646524.967 9979473.633 9996532.604 9825355.507 8988816.708 9519446.482 10084036.22 9023362.734 9271526.997 1.030098029 1.040446193 1.07635707 1.078197001 1.059734336 0.969507689 1.026739876 1.087634887 0.973233723 1 23.14437554 LAAAEETAVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 LAAAEETAVSPR 12 0 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR ;;; 215.09 1.15E-18 12678900000 4593460 5647170 5778110 5525070 6127380 5394020 5675890 5469600 5355140 7111000 TRUE FALSE FALSE 5615259.33 6307557.408 7915673.336 5826890.584 5517316.533 5676442.546 4463189.734 4128172.024 6429867.478 5338358.568 1.051870019 1.181553717 1.482791617 1.091513526 1.033523032 1.063331073 0.836060313 0.773303623 1.204465267 1 22.34796478 -5.698834501 2.487703043 0.962260077 1.236625032 0.350755751 0.150896408 0.303482305 3.834869415 0.050224912 0.066262537 2.00E-06 5.698834501 0.274364954 LAAAEETAVS(ph)PR ddPTM_HeLa_A486_30min_R1 6 LAAAEETAVSPR 12 0 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR ;;;;; 185.2 5.85E-13 10518190000 7136720 9282290 7729930 2368227 8616340 7764180 7978160 8405340 7778710 8640630 TRUE FALSE FALSE 6636472.782 8546727.535 10723165.91 5513352.14 7535598.293 6806314.412 5981939.984 6491627.569 8452974.846 6476960.007 1.024627723 1.319558485 1.655586247 0.851225287 1.163446784 1.050850153 0.923572166 1.002264575 1.305083687 1 22.62688541 -5.278584593 24.99250314 1.042894245 1.331887639 0.345164781 0.183615498 894.9508581 1304564.013 0.051817946 0.077071951 5.27E-06 5.278584593 0.288993394 LAAAILGGVDQIHIKPGAK ddPTM_HeLa_A485_30min_R1 2 LAAAILGGVDQIHIKPGAK 19 1 P22087;M0R2U2;M0R1H0;M0R2B0;M0R0P1;M0R299;M0QXL5;M0R2Q4 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 0 0 ; ; 151.48 2.35E-10 17896500 39066 33556 28898 44711 48864 41016 56819 58345 36744 66914 FALSE FALSE TRUE 47756.09692 37480.0823 39588.57275 47153.44872 43998.92859 43163.53434 44679.15648 44035.79727 44118.18376 50233.57126 0.950680904 0.74611622 0.788089952 0.938683982 0.875886931 0.859256733 0.889428232 0.876620877 0.878260945 1 15.61636422 -14 0.161871251 1.5170571 0.827936444 0.331236491 0.057687697 153.3326937 1.41573558 25.36161445 0.241390091 1.00E-14 14 -0.689120656 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_HeLa_A485_30min_R1 2 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 37 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ; ; 161.11 2.03E-14 2894670000 638980 297090 172817 1094600 552560 532130 1028910 852360 361870 1265690 FALSE FALSE TRUE 781118.8965 331832.0912 236749.1998 1154395.226 497545.1862 559991.504 809074.9731 643317.3736 434493.9897 950176.7763 0.822077445 0.349231953 0.24916332 1.214926796 0.523634337 0.589355074 0.851499419 0.677050197 0.457277004 1 19.85783642 -11.69391534 2.009260701 9.999114162 0.63698553 0.145399433 0.263916109 11322078.74 279771.5228 467648736.4 0.070066275 2.02E-12 11.69391534 -9.362128632 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_HeLa_A486_30min_R1 1 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 37 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 422.82 5.14E-247 773700000 330520 297540 93442 274830 246470 455330 621320 560930 228280 642420 FALSE FALSE TRUE 307352.2548 273961.8468 129625.2449 639818.1291 215555.4344 399156.0141 465859.1643 433218.484 248067.4942 481553.8505 0.638251058 0.568912171 0.269181203 1.328653334 0.447624776 0.82889175 0.967408243 0.899626248 0.515139675 1 18.87733761 -5.225968135 24.99997373 0.837732948 0.499794616 0.306540606 0.24928682 783.19219 551989.4548 0.065050285 0.112665188 5.94E-06 5.225968135 -0.337938332 LAAFADALEFADEEKES(ph)PVEFTGHK ddPTM_HeLa_A485_30min_R1 3 LAAFADALEFADEEKESPVEFTGHK 25 1 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 1 0 LAAFADALEFADEEKES(1)PVEFTGHK;LAAFADALEFADEEKES(1)PVEFTGHK;LAAFADALEFADEEKES(1)PVEFTGHK ;; 310.28 1.84E-105 404367000 289341 186112 128663 534050 313251 263471 454113 401876 213505 685660 TRUE FALSE FALSE 353703.9072 207876.1794 176260.7978 563223.7992 282062.6305 277265.9342 357088.0478 303315.2809 256353.4951 514737.5806 0.687153844 0.403848849 0.342428462 1.094195995 0.547973649 0.538654927 0.693728341 0.58926197 0.498027548 1 18.97347759 -11.0528916 2.60807953 1.549717488 0.599879792 0.274069989 0.195553442 28070702.52 12821945.4 91828903.77 0.050351039 8.85E-12 11.0528916 -0.949837696 LAAFADALEFADEEKES(ph)PVEFTGHK ddPTM_HeLa_A486_30min_R1 4 LAAFADALEFADEEKESPVEFTGHK 25 1 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 1 0 LAAFADALEFADEEKES(0.999)PVEFT(0.001)GHK;LAAFADALEFADEEKES(0.999)PVEFT(0.001)GHK;LAAFADALEFADEEKES(0.996)PVEFT(0.004)GHK;LAAFADALEFADEEKES(1)PVEFTGHK ;;; 268.96 1.51E-62 914000000 260070 242246 107332 201417 212322 306192 426827 381853 211609 503642 TRUE FALSE FALSE 241840.436 223049.5447 148893.8249 468908.9551 185690.5949 268417.1442 320030.3701 294913.4077 229951.4385 377526.765 0.640591498 0.590817832 0.394392765 1.242054865 0.491860742 0.710988383 0.847702467 0.781172184 0.609099698 1 18.5262194 -14 0.040439344 2.196283008 2.73E-12 0.148770893 0.218964857 1676.212015 5.049920073 248.6352745 73.66131474 1.00E-14 14 -2.196283008 LAAFGQLHK ddPTM_HeLa_A486_30min_R1 1 LAAFGQLHK 9 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 0 83.005 0.018301 9734400 22876 23724 16771 8427.1 26032 24259 25546 26243 21054 26528 FALSE FALSE TRUE 21272.51053 21844.02384 23265.18034 19618.71468 22766.82382 21266.17123 19154.1206 20268.04178 22878.97767 19885.21613 1.069765115 1.098505729 1.169973723 0.986598011 1.144912063 1.069446321 0.963234218 1.019251772 1.150552125 1 14.27940862 -6.530163618 24.97084569 1.032217613 1.093934993 0.168235996 0.063619734 323.1629065 1107715.555 0.023902126 0.018557702 2.95E-07 6.530163618 0.061717379 LAAGHELQPLAIVDQRPS(ph)SR ddPTM_HeLa_A485_30min_R1 2 LAAGHELQPLAIVDQRPSSR 20 1 P17302 P17302 GJA1 Gap junction alpha-1 protein 1 0 LAAGHELQPLAIVDQRPS(0.5)S(0.5)R;LAAGHELQPLAIVDQRPS(0.5)S(0.5)R ; 159.2 6.24E-11 686910000 277693 303940 206460 261220 175500 258856 283700 274244 220857 456700 TRUE FALSE FALSE 339464.8498 339483.1391 282838.1455 275489.7872 158026.6038 272409.2999 223085.1774 206985.229 265180.9741 342853.0949 0.990117502 0.990170846 0.824954331 0.803521366 0.460916369 0.794536505 0.650672783 0.603714046 0.773453639 1 18.38723102 -5.021729241 1.900489354 0.695767377 0.998619556 0.364384887 0.13537344 0.326630813 2.290348855 0.038098665 0.10206996 9.51E-06 5.021729241 0.302852179 LAAGHELQPLAIVDQRPS(ph)SR ddPTM_HeLa_A486_30min_R1 2 LAAGHELQPLAIVDQRPSSR 20 1 P17302 P17302 GJA1 Gap junction alpha-1 protein 1 0 LAAGHELQPLAIVDQRPS(0.5)S(0.5)R;LAAGHELQPLAIVDQRPS(0.5)S(0.5)R ; 136.34 1.27E-07 606490000 196932 229960 189182 58548 234040 216190 205865 183360 232420 283940 TRUE FALSE FALSE 183128.0838 211737.1321 262438.3369 136302.7029 204684.5209 189518.6759 154355.3996 141612.9307 252566.3527 212839.5759 0.860404288 0.994820307 1.233033546 0.64040112 0.961684499 0.890429682 0.725219447 0.665350559 1.186651269 1 17.69940691 -5.260502167 24.99984035 0.852162252 1.025959456 0.145982572 0.177288512 152.9636562 4080202.055 0.048053809 0.077502359 5.49E-06 5.260502167 0.173797205 LAAGRPFNT(ph)YPR ddPTM_HeLa_A485_30min_R1 6 LAAGRPFNTYPR 12 1 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR ;;;;; 186.67 6.07E-13 3026390000 892914 1097759 1032459 835194 1252398 1103042 1323672 1525145 913054 1069570 TRUE FALSE FALSE 1091539.639 1226132.366 1414408.548 880818.5334 1127704.858 1160795.573 1040858.664 1151100.797 1096295.563 802945.883 1.359418688 1.527042347 1.76152413 1.096983685 1.404459356 1.445670995 1.296299895 1.433596986 1.365341782 1 19.61494323 -12.68362876 0.19038475 3.01E-15 1.49788554 0.39320777 0.156939577 83.2087191 1.279154777 32.91784585 0.453909155 2.07E-13 12.68362876 1.49788554 LAAGRPFNT(ph)YPR ddPTM_HeLa_A486_30min_R1 5 LAAGRPFNTYPR 12 1 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR;LAAGRPFNT(1)YPR ;;;; 165.86 2.66E-10 2988690000 702553 872918 846005 343558 1025460 781087 931396 983454 733376 849875 TRUE FALSE FALSE 653307.6627 803744.7986 1173600.793 799820.3865 896837.2448 684724.4275 698350.8695 759542.9928 796945.6222 637060.7682 1.025502896 1.261645417 1.842211687 1.255485232 1.407773464 1.074818073 1.096207621 1.192261446 1.250972689 1 19.28107147 -6.257776697 24.57238531 1.133203032 1.374288809 0.251291528 0.202090474 385.9029486 2588968.169 0.07062635 0.067996127 5.52E-07 6.257776697 0.241085777 LAALKDEPQTVPDVPSFGES(ph)PPLSPIDMDTQER ddPTM_HeLa_A486_30min_R1 1 LAALKDEPQTVPDVPSFGESPPLSPIDMDTQER 33 1 P17535;U3KPR5 P17535 JUND Transcription factor jun-D 1 0 LAALKDEPQTVPDVPSFGES(1)PPLSPIDMDTQER 271.49 7.97E-78 141110000 230870 226500 160570 109300 277150 266280 303920 301750 186750 317630 TRUE FALSE FALSE 214687.2052 208551.3151 222747.0042 254455.9237 242387.2627 233429.0809 227876.0015 233048.1122 202937.6404 238093.3806 0.901693297 0.875922357 0.935544716 1.068723217 1.018034446 0.980409789 0.957086673 0.978809707 0.852344739 1 17.86116799 -5.001994154 13.94640804 0.98095541 0.893024614 0.329008305 0.051888051 0.330381179 2301.330285 0.014316774 0.02829298 9.95E-06 5.001994154 -0.087930796 LAALKRPDDVPLSLS(ph)PSKR ddPTM_HeLa_A485_30min_R1 1 LAALKRPDDVPLSLSPSKR 19 3 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 LAALKRPDDVPLSLS(0.997)PS(0.003)KR 174.71 5.53E-13 451330000 258120 532220 206160 133640 399940 757780 987310 1859400 237040 220360 TRUE FALSE FALSE 315537.9035 594458.4993 282427.163 140940.4148 360120.5693 797456.189 776363.1529 1403379.235 284611.7537 165428.3074 1.907399697 3.593450895 1.707248097 0.851972779 2.176898107 4.820554604 4.693049001 8.483307702 1.720453761 1 17.3358466 -6.250306444 9.449002986 4.646096134 2.046522488 0.193252415 2.014479967 0.318910568 245.8285553 0.65641525 0.634068067 5.62E-07 6.250306444 -2.599573646 LAAPSVSHVS(ph)PR ddPTM_HeLa_A485_30min_R1 5 LAAPSVSHVSPR 12 0 A0A0U1RRM7;A0A0U1RQW3;A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-3;Q8WXE1-2;Q8WXE1 A0A0U1RRM7 ATRIP ATR-interacting protein 1 0 LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVS(0.001)HVS(0.999)PR ;;;; 181.26 5.71E-13 5185660000 2670888 4385080 4776450 1981480 5075480 3566750 4237980 4729840 3739960 3349590 TRUE FALSE FALSE 3265017.821 4897876.961 6543457.62 2089723.235 4570147.39 3753499.515 3332500.952 3569839.324 4490535.667 2514598.858 1.29842492 1.947776659 2.602187462 0.831036421 1.817445902 1.492683218 1.325261459 1.419645648 1.785786092 1 21.26189684 -5.265679254 24.99985337 1.419608877 1.949294359 0.284282781 0.409755246 490.2255589 2890552.314 0.112544838 0.173848134 5.42E-06 5.265679254 0.529685483 LAAPSVSHVS(ph)PR ddPTM_HeLa_A486_30min_R1 7 LAAPSVSHVSPR 12 0 A0A0U1RRM7;A0A0U1RQW3;A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-3;Q8WXE1-2;Q8WXE1 A0A0U1RRM7 ATRIP ATR-interacting protein 1 0 LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR;LAAPSVSHVS(1)PR ;;;;;; 221.59 3.78E-23 5085220000 4916779 5615486 5264701 363168 6550720 4216118 4905945 4908997 4985253 3120207 TRUE FALSE FALSE 4572138.182 5170494.438 7303334.221 845473.4575 5729067.615 3695976.228 3678425.671 3791325.546 5417378.744 2338886.858 1.954835125 2.210664625 3.122568411 0.361485403 2.449484717 1.580228738 1.57272493 1.620995703 2.316220952 1 21.15739064 -5.231694014 24.99996296 1.621951814 2.407486662 0.286455707 0.624624779 977.0109805 821143.2308 0.161811547 0.280217299 5.87E-06 5.231694014 0.785534848 LAAQLEQCALQDRES(ph)AGEGLGPR ddPTM_HeLa_A486_30min_R1 1 LAAQLEQCALQDRESAGEGLGPR 23 1 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 LAAQLEQCALQDRES(1)AGEGLGPR 88.014 0.0011556 38209000 9005.4 10267 7982.6 3811.1 11289 11562 9589.8 15947 9268.1 9598.1 TRUE FALSE FALSE 8374.167964 9453.405528 11073.6765 8872.433402 9873.028354 10135.59799 7190.330609 12316.21622 10071.46637 7194.673287 1.163939991 1.313945075 1.539149321 1.233194761 1.372269172 1.408764177 0.999396404 1.711852051 1.399850413 1 12.81271346 LAAQLGAPTS(ph)PIPDSAIVNTR ddPTM_HeLa_A485_30min_R1 2 LAAQLGAPTSPIPDSAIVNTR 21 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 LAAQLGAPT(0.409)S(0.591)PIPDSAIVNTR;LAAQLGAPT(0.161)S(0.839)PIPDSAIVNTR ; 298.96 3.79E-87 365810000 296160 347630 385160 327830 413800 323745 382350 392480 354160 413740 TRUE FALSE FALSE 362039.7703 388282.3045 527646.7118 345738.5228 372600.6191 340695.7876 300657.799 296223.6646 425236.6635 310602.2323 1.165605822 1.250095022 1.698785961 1.11312311 1.199607022 1.096887762 0.967983381 0.953707455 1.369071498 1 18.24470867 -5.47686263 24.98889345 1.095139787 1.367122174 0.34382088 0.171896346 481.9394858 261715.0502 0.04880472 0.072386057 3.34E-06 5.47686263 0.271982387 LAAQLGAPTS(ph)PIPDSAIVNTR ddPTM_HeLa_A486_30min_R1 1 LAAQLGAPTSPIPDSAIVNTR 21 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 LAAQLGAPT(0.205)S(0.795)PIPDSAIVNTR 249.06 6.45E-47 253350000 157230 176200 153540 48068 206280 164500 174270 178360 158050 175240 TRUE FALSE FALSE 146208.9889 162237.2703 212994.7999 111904.7332 180406.4389 144205.6625 130665.8028 137751.3216 171749.9013 131358.7634 1.113050893 1.235070018 1.621473851 0.851901543 1.37338716 1.097800092 0.994724672 1.048664878 1.307487196 1 17.00315293 -5.270514319 24.99895057 1.105686409 1.31438544 0.237345118 0.185666282 997.6478257 2748242.484 0.05139301 0.077484723 5.36E-06 5.270514319 0.208699032 LAAVQLLQFLAPK ddPTM_HeLa_A486_30min_R1 1 LAAVQLLQFLAPK 13 0 Q9NXF1-2;Q9NXF1 Q9NXF1-2 TEX10 Testis-expressed sequence 10 protein 0 0 92.062 0.0060079 0 1308.3 1202.6 852.88 261.68 1290.7 1023.7 2111 1766 1362.7 1392.1 FALSE FALSE TRUE 1216.594926 1107.301596 1183.137977 609.2042646 1128.808371 897.4063022 1582.805472 1363.920352 1480.819933 1043.509099 1.165869016 1.06113267 1.133807054 0.5838035 1.08174272 0.859988958 1.516810418 1.307051709 1.419077164 1 10.02722746 -6.755331588 24.99742946 1.336322475 0.978159881 0.392293212 0.199987505 140.0766085 573295.565 0.07651245 0.057722897 1.76E-07 6.755331588 -0.358162594 LADALQELR ddPTM_HeLa_A485_30min_R1 2 LADALQELR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 151.48 0.00021152 63497000 69682 101400 94421 75309 112956 90884 109775 121362 86499 100922 FALSE FALSE TRUE 85182.5205 113257.8479 129351.2571 79422.93998 101709.704 95642.54571 86320.67447 91597.77921 103858.5559 75764.00273 1.124313888 1.494876773 1.707291754 1.048293875 1.342454205 1.262374508 1.139336246 1.20898812 1.370816643 1 16.20922493 -5.276587984 24.99709544 1.21124767 1.447432435 0.297879122 0.171997307 1000.7749 1651402.137 0.047937638 0.071414671 5.29E-06 5.276587984 0.236184765 LADAMAES(ph)PSRDVVGSGTELQR ddPTM_HeLa_A485_30min_R1 2 LADAMAESPSRDVVGSGTELQR 22 1 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 LADAMAES(0.969)PS(0.031)RDVVGSGTELQR;LADAMAES(0.966)PS(0.034)RDVVGSGTELQR ; 178.95 1.10E-19 789700000 180412 277120 263420 177621 282910 257680 282260 341410 223979 275760 TRUE FALSE FALSE 220544.027 309526.7734 360870.0198 187323.9855 254742.487 271171.7264 221952.8451 257678.6622 268929.5308 207018.107 1.065336893 1.495167635 1.743180947 0.904867638 1.230532395 1.309893759 1.072142183 1.244715576 1.299062844 1 17.65939743 -5.26645799 24.99951659 1.168371973 1.440622401 0.299066928 0.19728172 542.5280522 2702528.835 0.055242041 0.084908275 5.41E-06 5.26645799 0.272250428 LADAMAES(ph)PSRDVVGSGTELQR ddPTM_HeLa_A486_30min_R1 1 LADAMAESPSRDVVGSGTELQR 22 1 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 LADAMAES(0.978)PS(0.022)RDVVGSGTELQR 189.66 4.44E-20 286020000 123380 144130 133490 40414 194730 137150 137610 146430 124520 155810 TRUE FALSE FALSE 114731.6991 132708.6139 185180.903 94085.83441 170305.1476 120229.8274 103178.5225 113091.0855 135313.4939 116794.1618 0.982341046 1.136260681 1.585532188 0.80556967 1.458164902 1.029416415 0.883421918 0.968293995 1.15856385 1 16.83360863 -6.495897044 24.78392842 0.993712209 1.19592748 0.157485372 0.21497545 1166.778618 1071741.666 0.073347897 0.064494568 3.19E-07 6.495897044 0.202215271 LADFGVLHR ddPTM_HeLa_A485_30min_R1 1 LADFGVLHR 9 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 104.17 0.0029649 20447000 7954.5 9677.3 9435 7679.8 11141 8969.9 10621 12447 8633.5 13202 FALSE FALSE TRUE 9723.951082 10808.97605 12925.39912 8099.328028 10031.76292 9439.550094 8351.736584 9394.353734 10366.16426 9910.984365 0.981128688 1.090605701 1.304148876 0.817207225 1.012186333 0.952433154 0.842674782 0.947872924 1.04592681 1 13.27481264 -5.272946335 24.99996519 0.942086292 1.121825561 0.407217327 0.099338288 710.0166271 1542578.035 0.027997594 0.041944592 5.33E-06 5.272946335 0.179739269 LADFGVLHR ddPTM_HeLa_A486_30min_R1 2 LADFGVLHR 9 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 110.87 0.0031274 757380000 506490 603450 532620 182026 733010 545650 580460 617240 505020 577310 FALSE FALSE TRUE 470987.6665 555630.4243 738864.7281 423765.7271 641069.0508 478333.2508 435222.7685 476707.9263 548795.5402 432747.8183 1.088365202 1.283958926 1.707379441 0.979244052 1.481391757 1.105339485 1.005719151 1.101583662 1.268164776 1 18.72316702 -6.375587391 9.625084745 1.095851475 1.310516505 0.222001425 0.198381679 0.603107642 47.20973542 0.068770586 0.060607086 4.21E-07 6.375587391 0.214665029 LADILS(ph)PR ddPTM_HeLa_A485_30min_R1 7 LADILSPR 8 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR ;;;;;; 130.98 0.00054137 2725051500 1117224 1436023 1403381.9 1220820.5 1786984 1522120 1770877 1903303 1385380 1677953 TRUE FALSE FALSE 1365746.624 1603953.398 1922551.264 1287510.833 1609065.598 1601815.85 1392514.662 1436514.955 1663413.059 1259670.198 1.084209682 1.273312174 1.526233825 1.022101527 1.277370538 1.271615263 1.105459719 1.140389729 1.320514736 1 20.26461463 -13.76529658 0.218113095 6.82E-09 1.255296636 0.18222462 0.138611322 232.3822421 2.553346251 102.0861169 0.272967648 1.72E-14 13.76529658 1.25529663 LADILS(ph)PR ddPTM_HeLa_A486_30min_R1 7 LADILSPR 8 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR;LADILS(1)PR ;;;;;; 138.22 0.00045022 3549924000 2092210 2373470 2016905 744664 2778300 2142970 2453990 2430730 2094937 2402890 TRUE FALSE FALSE 1945556.883 2185387.593 2797904.631 1733615.425 2429819.707 1878592.15 1839975.746 1877305.841 2276527.826 1801190.704 1.080150413 1.213301617 1.553363908 0.962482996 1.349007466 1.042972377 1.021533002 1.042258234 1.263901607 1 20.78051951 -6.28236333 24.53053555 1.073486668 1.233559327 0.193014267 0.161026074 1109.343794 1300552.828 0.055815923 0.049284476 5.22E-07 6.28236333 0.160072659 LADS(ph)GDGAGPSPEEKDFLK ddPTM_HeLa_A485_30min_R1 1 LADSGDGAGPSPEEKDFLK 19 1 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 0 LADS(0.888)GDGAGPS(0.112)PEEKDFLK 86.557 0.00036346 371860000 107340 56882 51386 157100 113430 108740 174260 144740 76812 241810 TRUE FALSE FALSE 131217.4127 63533.85509 70395.81975 165681.9752 102136.5109 114433.4583 137027.9274 109242.2881 92227.46384 181531.2172 0.722836627 0.349988592 0.387789058 0.912691369 0.562638826 0.630378951 0.754844977 0.601782381 0.508052914 1 17.46985814 -14 0.256722556 3.461624414 0.57086783 0.344305662 0.16125622 227.5777131 2.246371072 295.6087074 0.228331302 1.00E-14 14 -2.890756584 LADS(ph)PPPQVWQLISK ddPTM_HeLa_A485_30min_R1 2 LADSPPPQVWQLISK 15 0 Q5HY81;P11441 Q5HY81 UBL4A Ubiquitin-like protein 4A 1 0 LADS(1)PPPQVWQLISK;LADS(1)PPPQVWQLISK ; 190.46 3.93E-18 731740000 452120 488830 424830 530620 670380 599970 774040 833760 464250 746480 TRUE FALSE FALSE 552692.5342 545994.4162 581992.2957 559606.427 603634.6134 631383.5015 608660.0307 629279.0527 557420.7166 560396.2739 0.98625305 0.974300583 1.038537054 0.998590556 1.077156722 1.126673268 1.086124336 1.122917981 0.994690262 1 19.09608784 -5.762653217 23.92335771 1.07792018 1.000420083 0.349890706 0.044505634 18.45394586 363715.4184 0.013234868 0.015860185 1.73E-06 5.762653217 -0.077500097 LADS(ph)PPPQVWQLISK ddPTM_HeLa_A486_30min_R1 2 LADSPPPQVWQLISK 15 0 Q5HY81;P11441 Q5HY81 UBL4A Ubiquitin-like protein 4A 1 0 LADS(1)PPPQVWQLISK;LADS(1)PPPQVWQLISK ; 205.88 1.75E-25 319380000 451950 560560 350700 155683 583620 537510 592680 654130 477300 622540 TRUE FALSE FALSE 420270.6389 516139.1841 486500.4321 362437.8918 510416.9376 471197.4812 444385.1953 505198.8786 518672.7483 466651.9319 0.900608377 1.10604746 1.042533843 0.776677148 1.093785116 1.00974077 0.952284058 1.082603208 1.111476698 1 18.83198734 -7.272476846 24.10305963 1.072779979 0.98745441 0.133001478 0.094338782 935.3280597 2042504.521 0.050644479 0.024720099 5.34E-08 7.272476846 -0.08532557 LADSGDGAGPS(ph)PEEKDFLK ddPTM_HeLa_A485_30min_R1 3 LADSGDGAGPSPEEKDFLK 19 1 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 0 LADSGDGAGPS(1)PEEKDFLK;LADSGDGAGPS(1)PEEKDFLK;LADS(0.03)GDGAGPS(0.97)PEEKDFLK ;; 194.97 2.88E-19 1243700000 902310 587040 413713 1687780 1065600 928010 1655260 1513930 750090 2412660 TRUE FALSE FALSE 1103025.747 655689.2214 566762.6547 1779979.148 959505.1225 976599.1686 1301600.179 1142636.294 900626.1828 1811228.264 0.608993228 0.362013576 0.312916194 0.982747003 0.529753837 0.539191657 0.718628461 0.630862667 0.497246096 1 20.78853695 -14 0.175697134 2.637593899 0.48759435 0.337234046 0.177713842 161.6998584 1.543254889 92.88057853 0.608388353 1.00E-14 14 -2.149999549 LADSGDGAGPS(ph)PEEKDFLK ddPTM_HeLa_A486_30min_R1 2 LADSGDGAGPSPEEKDFLK 19 1 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 0 LADSGDGAGPS(1)PEEKDFLK;LADSGDGAGPS(1)PEEKDFLK ; 245.41 3.73E-46 1514110000 2258630 2213890 874640 1621700 2018430 3238500 4337000 3698600 1753870 4629300 TRUE FALSE FALSE 2100311.701 2038453.294 1213324.032 3775399.556 1765259.688 2838966.797 3251836.728 2856509.52 1905896.864 3470093.148 0.6052609 0.587434748 0.349651718 1.087982194 0.508706716 0.818124089 0.937103585 0.823179493 0.549235073 1 21.72654296 -5.246534545 24.99967015 0.802504486 0.521447701 0.367156776 0.181836674 934.0586906 1566681.368 0.047862542 0.082469633 5.67E-06 5.246534545 -0.281056785 LAEDEGDS(ph)EPEAVGQSR ddPTM_HeLa_A485_30min_R1 6 LAEDEGDSEPEAVGQSR 17 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR ;;;;; 468.95 9.69E-217 14059260000 1985230 2475700 2448620 2360720 3447680 2244590 2855350 3615000 2712680 4152720 TRUE FALSE FALSE 2426837.565 2765211.579 3354466.434 2489680.156 3104416.874 2362113.262 2245281.146 2728415.582 3257089.994 3117523.329 0.77845049 0.886989859 1.076003635 0.798608348 0.995795876 0.757689041 0.720213102 0.875186901 1.044768443 1 21.57196893 -7.738676131 8.820862599 1.022481503 0.86324678 0.278912417 0.103684785 0.272713415 96.37969246 0.076707006 0.02752042 1.83E-08 7.738676131 -0.159234724 LAEDEGDS(ph)EPEAVGQSR ddPTM_HeLa_A486_30min_R1 4 LAEDEGDSEPEAVGQSR 17 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR ;;; 452.97 4.02E-194 14181600000 2978610 3354750 2481960 925866 3399430 3018760 3385270 3233700 2408750 3064000 TRUE FALSE FALSE 2769824.821 3088907.392 3443041.381 2155462.839 2973041.791 2646336.084 2538239.64 2497457.101 2617542.389 2296754.457 1.205973417 1.344901012 1.499089888 0.938482053 1.294453476 1.152206792 1.105141924 1.087385329 1.139670104 1 21.1311652 -5.869823678 0.413959951 1.038766391 1.368708243 0.318544291 0.130520689 2.061043066 0.655147564 0.127746052 0.292277143 1.35E-06 5.869823678 0.329941852 LAEQAER ddPTM_HeLa_A485_30min_R1 2 LAEQAER 7 0 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;B4DJF2;I3L3T1;I3L0W5;F8WEB6;A2IDB1;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;Q04917;E5RGE1;P31947-2;P31947;P61981;P27348;E9PG15;P62258 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAE;YWHAH;YWHAZ;SFN;YWHAG;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 0 0 ; ; 217.38 1.21E-12 239310000 251140 304610 329640 272800 372220 282720 361830 329980 305580 384340 FALSE FALSE TRUE 307005.2266 340231.4897 451587.5535 287702.3732 335160.4699 297522.782 284522.0646 249051.8876 366907.1031 288531.1113 1.064028157 1.179184762 1.565126033 0.997127734 1.161609465 1.031163609 0.986105323 0.863171692 1.271637923 1 18.13836736 LAEQAER ddPTM_HeLa_A486_30min_R1 2 LAEQAER 7 0 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;B4DJF2;I3L3T1;I3L0W5;F8WEB6;A2IDB1;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;Q04917;E5RGE1;P31947-2;P31947;P61981;P27348;E9PG15;P62258 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAE;YWHAH;YWHAZ;SFN;YWHAG;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 0 0 ; ; 123.45 0.009264 63673000 64703 97079 205376 25537 145862 73321 89507 93734 95277 81049 FALSE FALSE TRUE 60167.65383 89386.10648 284903.0874 59451.42657 127566.6279 64275.40049 67111.40189 72392.8144 103535.6871 60753.80286 0.99035206 1.471284138 4.689469201 0.978563049 2.099730747 1.057965057 1.104645285 1.191576675 1.704184466 1 15.8906871 LAERLS(ph)PFLAESK ddPTM_HeLa_A485_30min_R1 2 LAERLSPFLAESK 13 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 LAERLS(1)PFLAESK;LAERLS(1)PFLAESK ; 156.13 1.16E-08 494560000 367210 372610 290130 411850 465400 427880 555520 651640 364550 633430 TRUE FALSE FALSE 448894.5976 416183.4982 397461.1603 434348.3226 419063.1419 450283.1352 436828.6138 491824.2683 437711.8411 475527.5584 0.943992813 0.875203741 0.835832021 0.913403051 0.881259423 0.946912807 0.918618924 1.0342708 0.920476287 1 18.85916943 -6.664832132 1.263369112 0.981774222 0.885856346 0.474162303 0.040312958 0.378233462 1.226219136 0.023651275 0.014877839 2.16E-07 6.664832132 -0.095917876 LAES(ph)PQLSK ddPTM_HeLa_A485_30min_R1 1 LAESPQLSK 9 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 LAES(1)PQLSK 81.709 0.0070613 249140000 476070 386310 258150 475830 460140 433490 551190 480700 374490 646720 TRUE FALSE FALSE 581970.1291 431485.594 353650.4275 501823.388 414326.846 456186.8661 433423.7537 362807.5713 449646.708 485504.606 1.198691262 0.888736355 0.728418275 1.033612003 0.853394264 0.939613879 0.892728407 0.74727936 0.926143032 1 18.88912546 -4.262631367 7.252788952 0.881760926 1.202618356 0.500903226 0.092135153 0.079141288 36.51371309 0.022019122 0.126317833 5.46E-05 4.262631367 0.32085743 LAFAEER ddPTM_HeLa_A485_30min_R1 1 LAFAEER 7 0 P49454 P49454 CENPF Centromere protein F 0 0 100.27 0.031955 832770000 833520 1343000 1251400 301030 2808700 356700 1558300 931410 909530 2209000 FALSE FALSE TRUE 1018933.648 1500052.167 1714344.935 317474.5067 2529055.966 375376.2604 1225356.475 702980.2371 1092064.328 1658336.954 0.614431009 0.904552096 1.033773583 0.191441496 1.525055545 0.22635705 0.738906814 0.423906755 0.658529816 1 20.66130574 LAFAEER ddPTM_HeLa_A486_30min_R1 1 LAFAEER 7 0 P49454 P49454 CENPF Centromere protein F 0 0 107.55 0.020184 0 2076400 1024400 829190 50878 1047200 739220 1195900 1320900 1188100 1065400 FALSE FALSE TRUE 1930855.083 943222.8132 1150274.574 118446.5552 915850.4112 648022.5522 896673.1711 1020159.905 1291085.465 798616.9054 2.417748822 1.181070432 1.440333365 0.14831461 1.146795673 0.811431048 1.122782607 1.277408352 1.616651809 1 19.60714409 -4.049713905 1.850026059 1.040624426 3.540345371 0.531885538 0.376229305 1.354470218 2.966728468 0.103533436 7.028141514 8.92E-05 4.049713905 2.499720945 LAFLLFK ddPTM_HeLa_A485_30min_R1 2 LAFLLFK 7 0 Q96DV4-2;Q96DV4 Q96DV4-2 MRPL38 "39S ribosomal protein L38, mitochondrial" 0 0 ; ; 142.42 0.0036498 20481300 41025 46210 35266 43346 53420 54353 64679 69027 33110 76682 FALSE FALSE TRUE 50150.86972 51613.85753 48312.36094 45713.88222 48101.31723 57198.83903 50859.80327 52098.02002 39754.8733 57566.58863 0.871180157 0.896593992 0.839243076 0.794104416 0.835576997 0.993611753 0.883495175 0.90500447 0.690589355 1 15.8129441 LAFLLFK ddPTM_HeLa_A486_30min_R1 2 LAFLLFK 7 0 Q96DV4-2;Q96DV4 Q96DV4-2 MRPL38 "39S ribosomal protein L38, mitochondrial" 0 0 ; ; 123.34 0.0093059 22037000 45209 58057 44072 23249 62263 55979 64505 60895 65290 70619 FALSE FALSE TRUE 42040.08256 53456.35188 61137.85869 54124.84694 54453.39396 49072.88013 48365.16674 47030.53783 70949.38977 52935.54275 0.79417496 1.009838553 1.154949123 1.022467026 1.028673574 0.92703083 0.913661488 0.888449148 1.340297768 1 15.6919491 -7.745631759 24.99998499 1.170149053 0.975811824 0.313187745 0.119577132 258.3347198 408564.0631 0.081547166 0.030599192 1.80E-08 7.745631759 -0.194337229 LAFPS(ph)PFGHLSEGFSHSR ddPTM_HeLa_A485_30min_R1 2 LAFPSPFGHLSEGFSHSR 18 0 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 LAFPS(1)PFGHLSEGFSHSR;LAFPS(1)PFGHLSEGFSHSR ; 299.69 5.50E-79 1885230000 160379 299292 352334 56073 466839 201018 228038 308475 257812 125720 TRUE FALSE FALSE 196054.7552 334291.5959 482677.0084 59136.12601 420358.87 211542.9916 179315.8184 232821.0226 309552.5036 94380.31771 2.077284332 3.541963028 5.114170202 0.626572652 4.453882761 2.241388849 1.899928107 2.466838725 3.279841721 1 16.52619841 -9.701568015 0.219015716 1.03E-12 3.364902193 0.167720126 1.238242815 25.66890662 1.481460332 21.69605619 3.025347077 1.99E-10 9.701568015 3.364902193 LAFPS(ph)PFGHLSEGFSHSR ddPTM_HeLa_A486_30min_R1 2 LAFPSPFGHLSEGFSHSR 18 0 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 LAFPS(1)PFGHLSEGFSHSR;LAFPS(1)PFGHLSEGFSHSR ; 250.86 2.26E-46 1431630000 189067 248740 323460 13172.1 347100 143695 176968 186814 222640 56707 TRUE FALSE FALSE 175814.3796 229028.9365 448712.3746 30665.31448 303563.4814 125967.3719 132688.7346 144280.5303 241938.6145 42507.1981 4.136108412 5.388003603 10.55615036 0.721414627 7.141460623 2.963436254 3.121559184 3.394261132 5.691709293 1 15.37541955 -5.274713282 24.99260592 3.655093571 6.562879506 0.281322382 2.366546271 1061.292717 1998239.751 0.646533797 0.965249942 5.31E-06 5.274713282 2.907785935 LAFPSPFGHLSEGFSHSR ddPTM_HeLa_A485_30min_R1 2 LAFPSPFGHLSEGFSHSR 18 0 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 0 0 ; ; 127.32 8.67E-07 10844600 17604 36240 43692 13717.3 47915 26703 30180 36605 30123 22201.3 FALSE FALSE TRUE 21519.94907 40477.95275 59855.48898 14466.64136 43144.41436 28101.12779 23731.79645 27627.56636 36168.4098 16666.92449 1.29117697 2.428639595 3.591273783 0.867985054 2.588624816 1.686041585 1.42388576 1.657628338 2.170071017 1 14.02470029 -6.08885918 1.101264884 1.601977357 2.265572229 0.108622475 0.746712282 1.150121983 2.943325777 0.369562571 0.393694699 8.15E-07 6.08885918 0.663594872 LAFPSPFGHLSEGFSHSR ddPTM_HeLa_A486_30min_R1 1 LAFPSPFGHLSEGFSHSR 18 0 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 0 0 137.45 6.02E-06 272850000 36504 60223 82347 9430.2 94070 33066 39568 44383 59731 15447 FALSE FALSE TRUE 33945.25811 55450.71015 114233.9637 21953.98218 82270.86343 28986.65311 29667.66789 34277.95977 64908.53117 11578.97066 2.931630031 4.788915336 9.865640661 1.89602192 7.105196642 2.503387734 2.562202528 2.960363299 5.605725508 1 13.49921939 -6.282146036 24.74785238 3.026100039 5.350710782 0.212339011 2.298207045 1213.740722 1450614.458 0.79394411 0.700972773 5.22E-07 6.282146036 2.324610744 LAFTLDHETGLPQGCHIYEYRESNKPCCAGTPRPK ddPTM_HeLa_A486_30min_R1 1 LAFTLDHETGLPQGCHIYEYRESNKPCCAGTPRPK 35 3 Q8IYB7-2 Q8IYB7-2 DIS3L2 DIS3-like exonuclease 2 0 0 26.898 0.037663 38128000000 5621300 3096300 507450 911440 2361000 8360700 12522000 10046000 2606300 10616000 FALSE FALSE TRUE 5227275.898 2850937.911 703948.23 2121878.382 2064861.365 7329241.839 9388863.156 7758745.103 2832216.182 7957684.501 0.656884034 0.358262245 0.08846144 0.266645201 0.259480175 0.921026944 1.17984863 0.975000341 0.355909584 1 22.92391727 -6.263434211 24.95440077 0.903137866 0.311253774 0.579950324 0.23809055 128.3318605 1605362.32 0.084861663 0.078581505 5.45E-07 6.263434211 -0.591884092 LAFVIR ddPTM_HeLa_A485_30min_R1 2 LAFVIR 6 0 A8MUD9;P18124;C9JZ88;C9JIJ5 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 183.28 0.00016403 357200000 353020 488870 514170 368060 594070 452420 564910 583800 445870 544470 FALSE FALSE TRUE 431548.0811 546039.0939 704382.8794 388166.1858 534922.3049 476108.0116 444212.3636 440622.1346 535352.0192 408743.6492 1.055791526 1.335896215 1.723287642 0.9496568 1.308698755 1.16480834 1.086774961 1.07799139 1.30975006 1 18.64083679 -5.293284504 24.99781295 1.138804793 1.36808265 0.263812399 0.185726681 911.5065064 715513.2754 0.052020705 0.077166368 5.09E-06 5.293284504 0.229277856 LAFVIR ddPTM_HeLa_A486_30min_R1 2 LAFVIR 6 0 A8MUD9;P18124;C9JZ88;C9JIJ5 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 183.28 0.00016403 351050000 456200 483880 420060 154739 505050 406210 497950 476980 389220 460850 FALSE FALSE TRUE 424222.7358 445535.5865 582718.4816 360240.2121 441701.9196 356095.9402 373357.6432 368382.0664 422957.903 345450.1604 1.228028771 1.289724648 1.686838069 1.042813851 1.27862705 1.030817122 1.080785844 1.066382676 1.224367366 1 18.39811806 -5.301444219 24.99942848 1.109499734 1.390350284 0.492752405 0.138379643 433.4589835 270872.0108 0.038519036 0.057133898 5.00E-06 5.301444219 0.280850551 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSS(ph)GSPR ddPTM_HeLa_A486_30min_R1 1 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGSPR 45 1 O14686;O14686-3;F8VWW4 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVS(0.001)VLS(0.098)S(0.451)GS(0.451)PR 212.83 7.96E-32 375030000 196560 174300 102690 56516 193700 204240 261000 232050 145700 225850 TRUE FALSE FALSE 182782.159 160487.8332 142454.3181 131572.1042 169404.3398 179042.9454 195695.0394 179217.2806 158329.3933 169295.69 1.079662212 0.947973532 0.841452716 0.777173383 1.000641776 1.057575331 1.155936335 1.058605099 0.935224006 1 17.36918572 -5.988562 24.68877855 1.049710062 0.906626654 0.319026142 0.089252346 226.0876294 488003.7913 0.029673501 0.033619212 1.03E-06 5.988562 -0.143083408 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGSPR 45 1 O14686;O14686-3;F8VWW4 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLS(0.231)S(0.166)GS(0.603)PR 266.12 1.26E-66 329690000 141760 118270 112050 184370 178740 158620 246140 241670 138970 244070 TRUE FALSE FALSE 173294.0229 132100.6477 153501.9578 194441.6663 160944.018 166925.0979 193550.1782 182400.0536 166860.0043 183227.8408 0.945784343 0.72096384 0.837765468 1.061201537 0.878381895 0.91102475 1.056336075 0.995482197 0.91066949 1 17.48327921 -5.137459959 7.274430128 0.96977789 0.820578555 0.405389083 0.076406936 0.240090909 13.17866929 0.020394286 0.035593578 7.29E-06 5.137459959 -0.149199335 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGSPR 45 1 O14686;O14686-3;F8VWW4 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLS(0.01)S(0.171)GS(0.819)PR 235.63 9.09E-53 319630000 264650 250830 143540 70162 293700 285600 358640 340680 219620 312040 TRUE FALSE FALSE 246099.4017 230953.3173 199122.5321 163340.6818 256861.4074 250365.5758 268904.4787 263114.601 238656.8384 233903.153 1.052142301 0.987388645 0.851303326 0.698326122 1.098152821 1.070381363 1.149640248 1.124886936 1.020323307 1 17.83555178 -5.86637621 22.78544281 1.086767867 0.900073902 0.457166578 0.095697929 5.174817145 1106.701115 0.031531276 0.035753144 1.36E-06 5.86637621 -0.186693965 LAGGQTSQPTTPLTS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 LAGGQTSQPTTPLTSPQR 18 0 O95155;O95155-4;O95155-2;B1AQ61 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 LAGGQTSQPTTPLT(0.127)S(0.872)PQR 73.464 0.001117 0 52072 53849 49560 54494 56395 37961 54526 40177 36237 57753 TRUE FALSE FALSE 63655.23675 60146.17213 67894.30636 57470.86923 50780.11579 39948.57926 42876.07466 30323.52775 43509.43351 43356.23997 1.468190895 1.387255264 1.565963894 1.325550123 1.171229697 0.921403223 0.988925117 0.699404002 1.003533368 1 15.40395203 -5.940458117 1.587338927 0.896461889 1.467226876 0.867636738 0.09535367 0.119144068 0.616233348 0.035584461 0.041464772 1.15E-06 5.940458117 0.570764987 LAGGQTSQPTTPLTS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 LAGGQTSQPTTPLTSPQR 18 0 O95155;O95155-4;O95155-2;B1AQ61 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 LAGGQTSQPTTPLT(0.15)S(0.85)PQR 88.133 0.00084802 80982000 70231 82191 58735 21193 60257 61599 59711 65007 55832 62959 TRUE FALSE FALSE 65308.16957 75677.88583 81478.76498 49338.37503 52699.00519 53999.54167 44770.67624 50206.32519 60671.56271 47193.65661 1.383833639 1.603560548 1.726477049 1.045445057 1.116654419 1.144211861 0.94865877 1.063836304 1.285587239 1 15.52630534 -5.269451026 24.99627013 1.086939247 1.574517429 0.788004571 0.115262825 250.7527509 782346.3072 0.032600527 0.04934255 5.38E-06 5.269451026 0.487578182 LAGLTVS(ph)SPLKR ddPTM_HeLa_A485_30min_R1 1 LAGLTVSSPLKR 12 1 Q8WYL5-4;Q8WYL5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 LAGLT(0.018)VS(0.491)S(0.491)PLKR 50.155 0.03045 121100000 6598.6 4189.1 2234.1 5142.5 5252.9 4215.9 7262.5 5992.2 3605.7 7945.3 TRUE FALSE FALSE 8066.435805 4678.978805 3060.586559 5423.421754 4729.902832 4436.638005 5710.807546 4522.603555 4329.330917 5964.682932 1.352366236 0.784447197 0.513118064 0.909255666 0.792984788 0.743817912 0.957436902 0.758230338 0.725827503 1 12.54222973 -4.261186948 24.35585789 0.788443701 1.352366432 0.617488728 0.130604823 9.141497333 881301.4765 0.031714214 0.178900093 5.48E-05 4.261186948 0.563922731 LAGS(ph)PIR ddPTM_HeLa_A485_30min_R1 4 LAGSPIR 7 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LAGS(1)PIR;LAGS(1)PIR;LAGS(1)PIR;LAGS(1)PIR ;;; 102.62 0.0039581 583810000 1094430 1445980 1507040 1144730 1803260 1269490 1444960 1485870 1282040 1527270 TRUE FALSE FALSE 1337882.178 1615074.783 2064556.809 1207263.701 1623721.103 1335958.533 1136232.492 1121458.053 1539333.668 1146549.696 1.166876745 1.408639144 1.800669274 1.052953662 1.416180309 1.165198977 0.99100152 0.97811552 1.342579108 1 20.12886746 -6.169563937 1.396160045 1.074340308 1.408510053 0.296587119 0.208472908 0.519365678 2.049218321 0.093802611 0.091392666 6.77E-07 6.169563937 0.334169745 LAGS(ph)PIR ddPTM_HeLa_A486_30min_R1 3 LAGSPIR 7 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LAGS(1)PIR;LAGS(1)PIR;LAGS(1)PIR ;; 113.71 0.0026696 386782000 952040 1123730 912810 309580 1229460 928830 1064760 1073670 815290 967960 TRUE FALSE FALSE 885306.9123 1034681.542 1266274.478 720717.8853 1075249.663 814240.3983 798345.7861 829218.7791 885959.9936 725576.5156 1.220142732 1.426012998 1.745197716 0.993303766 1.481924565 1.12219784 1.100291656 1.14284126 1.221042818 1 19.46876824 -6.024049005 1.063688062 1.116667481 1.419034105 0.28970758 0.190351002 0.660212421 1.592564797 0.092691418 0.106011364 9.46E-07 6.024049005 0.302366624 LAGS(ph)PPGSGQWKPK ddPTM_HeLa_A485_30min_R1 2 LAGSPPGSGQWKPK 14 1 H3BLU1;Q4KMQ1 H3BLU1 TPRN Taperin 1 0 LAGS(1)PPGSGQWKPK;LAGS(0.999)PPGS(0.001)GQWKPK ; 174.35 9.33E-13 1183200000 1376580 1168100 770410 1841590 1715530 1632410 2189290 2455300 953200 2472600 TRUE FALSE FALSE 1682795.472 1304699.134 1055416.718 1942191.399 1544725.81 1717880.463 1721530.307 1853133.825 1144498.497 1856226.325 0.906568046 0.702877185 0.568581915 1.046311741 0.832186134 0.925469292 0.927435563 0.998333986 0.616572711 1 20.82394119 -5.264106878 24.99994544 0.905098049 0.723695867 0.270065236 0.136034414 306.3017702 2870683.661 0.036817626 0.057559251 5.44E-06 5.264106878 -0.181402182 LAGS(ph)PPGSGQWKPK ddPTM_HeLa_A486_30min_R1 2 LAGSPPGSGQWKPK 14 1 H3BLU1;Q4KMQ1 H3BLU1 TPRN Taperin 1 0 LAGS(1)PPGSGQWKPK;LAGS(1)PPGSGQWKPK ; 167.28 2.55E-12 1643610000 3859400 4207600 2143040 1816530 3947300 4684000 5601800 5524300 3175500 4940900 TRUE FALSE FALSE 3588875.99 3874174.452 2972882.481 4228973.642 3452192.827 4106135.703 4200170.39 4266537.485 3450754.897 3703666.48 0.969006256 1.046037615 0.802686337 1.141834359 0.932101431 1.108667782 1.134057403 1.151976699 0.931713186 1 21.82052276 -5.28597543 24.93855319 1.063660656 0.949922754 0.239118551 0.095364392 1065.530373 1083007.539 0.02643008 0.039221328 5.18E-06 5.28597543 -0.113737902 LAHEVGWK ddPTM_HeLa_A485_30min_R1 1 LAHEVGWK 8 0 P40429;M0QYS1;Q8J015 P40429 RPL13A;RPL13a 60S ribosomal protein L13a 0 0 109.86 0.004288 225690000 143840 170980 144160 180930 209440 209590 233030 269420 169210 249690 FALSE FALSE TRUE 175836.7118 190974.6237 197490.783 190813.7478 188587.4182 220563.8083 183241.2368 203344.3226 203168.8949 187446.8782 0.938061564 1.018819974 1.053582673 1.017961726 1.006084604 1.176673682 0.977563556 1.084810398 1.083874519 1 17.51612227 -2.887988601 0.815405813 1.056906904 1.31E-09 0.280058048 0.054057933 24.78770926 2.162203848 0.018551318 39.00339825 0.00129423 2.887988601 -1.056906902 LAHPEGS(ph)LPDLTMMHLTASLEKPEVR ddPTM_HeLa_A486_30min_R1 2 LAHPEGSLPDLTMMHLTASLEKPEVR 26 1 E7EVM7;Q9H5I5-2;Q9H5I5;J3KRQ5 E7EVM7 PIEZO2 Piezo-type mechanosensitive ion channel component;Piezo-type mechanosensitive ion channel component 2 1 0 LAHPEGS(1)LPDLTMMHLTASLEKPEVR;LAHPEGS(1)LPDLTMMHLTASLEKPEVR ; 217.07 3.08E-38 426580000 265730 252820 200807 29052 326420 257410 270940 192106 329660 283250 TRUE FALSE FALSE 247103.6992 232785.6224 278564.8482 67634.52421 285477.3599 225653.3714 203147.9463 148367.6574 358235.1942 212322.3564 1.163813851 1.096378292 1.311990188 0.318546409 1.344546871 1.062786676 0.956790183 0.698784904 1.687223147 1 17.69589676 -9.576788187 5.189512988 1.000000008 1.050364855 0.000525521 0.35265344 107399373.2 3.914775507 2.527531132 0.08106017 2.65E-10 9.576788187 0.050364847 LAHYNK(ac)R ddPTM_HeLa_A485_30min_R1 2 LAHYNKR 7 1 P58876;P62807;O60814;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; LAHYNK(1)R;LAHYNK(1)R 119.57 0.016579 127202000 123086 155723 181006 132316 172449 169430 181699 219580 154310 199306 FALSE TRUE FALSE 150466.0561 173933.4502 247967.6517 139544.088 155279.3721 178301.0928 142877.5243 165727.6607 185278.6016 149622.6822 1.005636671 1.162480499 1.657286503 0.932639932 1.037806366 1.191671545 0.954918882 1.10763728 1.238305576 1 17.19096937 LAHYNK(ac)R ddPTM_HeLa_A486_30min_R1 2 LAHYNKR 7 1 P58876;P62807;O60814;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q6DRA6;Q6DN03;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; LAHYNK(1)R;LAHYNK(1)R 110.63 0.03088 141584000 103468 122690 108545 28876 136849 105679 116647 110423 116924 140393 FALSE TRUE FALSE 96215.42751 112967.5976 150576.5309 67224.78731 119684.1224 92641.39945 87460.68683 85282.09342 127059.0665 105237.679 0.914267859 1.073452005 1.430823374 0.638790098 1.137274439 0.880306372 0.831077687 0.810376039 1.207353371 1 16.68329181 -5.263564331 24.99999178 0.923940368 1.132908156 0.197176088 0.194022298 306.5372361 3606411.911 0.052728868 0.082766476 5.45E-06 5.263564331 0.208967788 LAIEAGFR ddPTM_HeLa_A485_30min_R1 2 LAIEAGFR 8 0 Q04828;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 Q04828;A0A0A0MSS8 AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ; ; 255.97 3.84E-29 488500000 431490 568170 631860 440350 621950 607360 728420 756380 468030 601260 FALSE FALSE TRUE 527473.4619 634612.5391 865611.3079 464405.2055 560026.4742 639160.4304 572787.1164 570876.619 561959.328 451376.9474 1.168587508 1.40594805 1.917712708 1.028863366 1.240706858 1.416023645 1.268977336 1.264744738 1.244988986 1 18.78397321 -8.783025057 0.249537521 0.881074726 1.442589929 0.198008218 0.218555462 9.721593827 1.149411507 1.574826218 0.461585701 1.65E-09 8.783025057 0.561515203 LAIEAGFR ddPTM_HeLa_A486_30min_R1 2 LAIEAGFR 8 0 Q04828;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 Q04828;A0A0A0MSS8 AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ; ; 224.44 5.89E-15 336800000 362500 429450 431740 140786 500050 410300 451820 455900 409770 479520 FALSE FALSE TRUE 337090.622 395418.818 598921.2904 327756.9229 437329.0662 359681.3576 338769.8571 352101.5222 445289.1935 359445.0708 0.937808442 1.100081348 1.666238708 0.911841473 1.216678435 1.000657365 0.942480186 0.979569761 1.238824036 1 18.45541179 LAILGIHNEVSK ddPTM_HeLa_A485_30min_R1 1 LAILGIHNEVSK 12 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H7C5W8 P12814-2 ACTN1 Alpha-actinin-1 0 0 118.48 0.00055034 20052000 26777 27088 27944 30380 41800 32216 38705 38723 28199 43707 FALSE FALSE TRUE 32733.45127 30255.70597 38281.64845 32039.58247 37638.24523 33902.77994 30435.36056 29226.12353 33858.28064 32811.64927 0.997616761 0.922102565 1.166709059 0.976469735 1.147100072 1.033254369 0.927577895 0.890724002 1.031898164 1 15.00192049 -6.7035975 7.245287708 0.953580869 1.043267859 0.19149392 0.077607206 0.335240051 34.625491 0.029717278 0.022814168 1.98E-07 6.7035975 0.089686991 LAILGIHNEVSK ddPTM_HeLa_A486_30min_R1 1 LAILGIHNEVSK 12 0 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H7C5W8 P12814-2 ACTN1 Alpha-actinin-1 0 0 132.32 0.00027104 22729000 40255 42685 30969 18974 48266 45586 49463 50799 37977 48870 FALSE FALSE TRUE 37433.33238 39302.48514 42961.02618 44172.43089 42212.02822 39962.0628 37086.83423 39233.17663 41268.87694 36632.63391 1.021857518 1.072881771 1.17275286 1.205821864 1.152306665 1.090886964 1.01239879 1.070989783 1.126560461 1 15.16084182 -6.520697345 23.72958857 1.057437323 1.128575616 0.25808664 0.057672805 70.96882207 772046.4022 0.023697482 0.018695673 3.02E-07 6.520697345 0.071138293 LAILYAK ddPTM_HeLa_A486_30min_R1 1 LAILYAK 7 0 F6VDH7;Q3KNR6;P50502;H7C3I1;Q8IZP2;Q8NFI4 F6VDH7 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 0 0 126.05 0.0083111 25782000 70052 83728 59281 26238 90979 79122 86167 86200 69017 84401 FALSE FALSE TRUE 65141.71655 77093.08835 82236.1908 61083.39 79567.56547 69360.73209 64607.10522 66574.14173 74999.44913 63266.44024 1.029640933 1.218546327 1.299839069 0.96549434 1.257658328 1.096327402 1.021190776 1.052282086 1.185453913 1 15.9491528 -6.509319001 24.2561928 1.067612887 1.157570126 0.142825259 0.103963089 872.5826863 1560916.282 0.036875079 0.031133345 3.10E-07 6.509319001 0.089957239 LAIQGPEDS(ph)PSR ddPTM_HeLa_A485_30min_R1 9 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 0 LAIQGPEDS(0.999)PS(0.001)R;LAIQGPEDS(0.948)PS(0.052)R;LAIQGPEDS(0.73)PS(0.27)R;LAIQGPEDS(0.728)PS(0.272)R;LAIQGPEDS(0.916)PS(0.084)R;LAIQGPEDS(0.992)PS(0.008)R;LAIQGPEDS(0.994)PS(0.006)R;LAIQGPEDS(0.996)PS(0.004)R;LAIQGPEDS(0.995)PS(0.005)R ;;;;;;;; 270.16 1.55E-34 15591300000 6087460 7864070 7829050 6657600 8901350 7362560 8540500 9522150 6393790 8390830 TRUE FALSE FALSE 7441594.476 8783704.578 10725341.39 7021287.83 8015100.339 7748052.257 6715752.406 7186827.782 7676965.006 6299150.503 1.181364769 1.394426848 1.70266473 1.114640431 1.272409722 1.230015421 1.066136204 1.140920157 1.218730209 1 22.58672585 -5.311016079 24.99999351 1.159918176 1.422980365 0.451138306 0.13972243 340.8593291 171884.0595 0.039675492 0.058848399 4.89E-06 5.311016079 0.26306219 LAIQGPEDS(ph)PSR ddPTM_HeLa_A486_30min_R1 8 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 0 LAIQGPEDS(0.995)PS(0.005)R;LAIQGPEDS(0.574)PS(0.426)R;LAIQGPEDS(0.997)PS(0.003)R;LAIQGPEDS(0.999)PS(0.001)R;LAIQGPEDS(0.999)PS(0.001)R;LAIQGPEDS(0.987)PS(0.013)R;LAIQGPEDS(0.823)PS(0.177)R;LAIQGPEDS(0.885)PS(0.115)R ;;;;;;; 263.51 1.45E-33 15170740000 7598950 8554120 7613640 2946260 10045350 8002760 8809310 8901430 6944320 8266880 TRUE FALSE FALSE 7066302.846 7876260.378 10561845.31 6859042.176 8785368.534 7015460.837 6605127.463 6874768.706 7546259.249 6196799.44 1.140314918 1.271020703 1.704403283 1.106868512 1.417726783 1.132110359 1.065893374 1.109406359 1.217767224 1 22.56309185 -6.344995364 6.288678659 1.10717202 1.333154725 0.321269486 0.162171975 0.305147461 18.81744668 0.057409769 0.050543317 4.52E-07 6.344995364 0.225982704 LAIRES(ph)IESEIR ddPTM_HeLa_A486_30min_R1 2 LAIRESIESEIR 12 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 LAIRES(1)IESEIR;LAIRES(1)IESEIR ; 105.14 0.00027898 150344000 138582 164207 128560 60596 170725 125493 143329 131602 119558 120525 TRUE FALSE FALSE 128868.1174 151194.6393 178341.875 141070.5504 149311.0786 110010.9496 107466.5682 101639.0975 129921.3837 90344.75551 1.426403965 1.673529785 1.974014695 1.561469169 1.652681196 1.217679421 1.189516399 1.125013808 1.438062265 1 16.46315324 -6.259565345 4.664170663 1.198110905 1.674114169 0.668333481 0.163181773 0.121033612 7.437897146 0.057339958 0.053793742 5.50E-07 6.259565345 0.476003264 LAIRES(ph)IESEIRR ddPTM_HeLa_A485_30min_R1 2 LAIRESIESEIRR 13 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 LAIRES(1)IESEIRR;LAIRES(1)IESEIRR ; 193.32 4.50E-18 1477490000 183410 236800 256300 204470 323530 266180 311510 383250 224880 271730 TRUE FALSE FALSE 224208.9217 264491.7001 351116.0355 215639.6784 291318.2172 280116.7732 244953.3437 289257.3366 270011.3533 203992.7118 1.099102609 1.296574264 1.72121853 1.057095013 1.428081497 1.373170496 1.200794585 1.41797878 1.323632354 1 17.63815808 -10.01320965 3.655131605 0.999918364 1.33081934 0.228503303 0.178328435 25546009.91 47486762.61 26403.55408 0.042483614 9.70E-11 10.01320965 0.330900976 LAIRES(ph)IESEIRR ddPTM_HeLa_A486_30min_R1 3 LAIRESIESEIRR 13 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 LAIRES(0.997)IES(0.003)EIRR;LAIRES(1)IESEIRR;LAIRES(1)IESEIRR ;; 168.32 2.47E-12 908642000 497992 532137 561077 255980 784249 511102 597682 670366 484161 542690 TRUE FALSE FALSE 463085.3324 489968.5261 778341.0406 595934.3765 685881.1776 448047.4317 448135.642 517738.2958 526128.4653 406796.8917 1.138369889 1.204454941 1.913340678 1.464943289 1.686053143 1.101403282 1.101620123 1.2727194 1.293344359 1 18.63394913 -6.276480197 24.92039061 1.167600049 1.489123601 0.354146396 0.220698294 982.423735 1627724.741 0.081808574 0.072428383 5.29E-07 6.276480197 0.321523552 LALAGEGEACPLLGS(ph)PGAGR ddPTM_HeLa_A486_30min_R1 1 LALAGEGEACPLLGSPGAGR 20 0 Q96F46-2;Q96F46 Q96F46-2 IL17RA Interleukin-17 receptor A 1 0 LALAGEGEACPLLGS(1)PGAGR 163.45 5.84E-14 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LALDGETLGEEEQEDEQPPWAS(ph)PSPTSR ddPTM_HeLa_A485_30min_R1 1 LALDGETLGEEEQEDEQPPWASPSPTSR 28 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 LALDGETLGEEEQEDEQPPWAS(0.692)PS(0.195)PT(0.057)S(0.057)R 58.612 0.016784 43069000 2463.2 3453.2 1444.5 2974.6 2208.1 1637.7 4206.7 2946.9 1782.2 4617.4 TRUE FALSE FALSE 3011.130342 3857.021701 1978.880661 3137.094866 1988.253811 1723.44744 3307.904179 2224.168154 2139.871193 3466.367157 0.868670342 1.112698548 0.570880282 0.905009401 0.573584309 0.497191256 0.954285576 0.641642404 0.617323871 1 11.75920876 -4.759453219 24.99999933 0.708980864 0.990684456 0.273879727 0.175574223 59.93371969 754337.911 0.043298431 0.103390026 1.74E-05 4.759453219 0.281703591 LALDGETLGEEEQEDEQPPWAS(ph)PSPTSR ddPTM_HeLa_A486_30min_R1 1 LALDGETLGEEEQEDEQPPWASPSPTSR 28 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 LALDGETLGEEEQEDEQPPWAS(0.869)PS(0.108)PT(0.011)S(0.011)R 100.86 0.00070617 49992000 26653 33764 28217 10203 37714 28642 33827 28215 31510 34189 TRUE FALSE FALSE 24784.76234 31088.41767 39143.37808 23753.09963 32983.55845 25108.44125 25363.12681 21791.06043 34241.31217 25627.85187 0.967102606 1.213071538 1.527376476 0.926847078 1.287020021 0.979732573 0.989670416 0.850288215 1.336097631 1 14.64542494 -6.273746971 24.34645017 1.019207813 1.190641572 0.133510649 0.193518011 1049.975336 2077017.685 0.06688337 0.059429209 5.32E-07 6.273746971 0.171433759 LALDMEIHAYR ddPTM_HeLa_A485_30min_R1 4 LALDMEIHAYR 11 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 184.71 1.43E-09 212492000 276398 383531 391046 299718 432546 355754 392286 420517 331991 409402 FALSE FALSE TRUE 337881.7815 428381.6142 535710.1882 316090.8354 389480.2015 374380.7293 308470.8914 317384.5464 398618.5485 307345.6159 1.099354486 1.39381072 1.743022059 1.028454024 1.267238514 1.218109874 1.003661271 1.032663328 1.296971643 1 18.22950238 -5.302342495 24.99996454 1.127623687 1.410237872 0.36084605 0.177349706 549.4419949 335817.5047 0.050556727 0.074988613 4.98E-06 5.302342495 0.282614185 LALDMEIHAYR ddPTM_HeLa_A486_30min_R1 4 LALDMEIHAYR 11 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 137.17 0.0012022 114036000 300320 311796 285040 115508 369078 290594 322160 319087 271809 318293 FALSE FALSE TRUE 279269.1189 287088.1494 395415.1216 268908.4615 322784.7957 254743.4668 241552.1605 246437.8557 295369.623 238590.3611 1.170496233 1.203268012 1.657297134 1.127071774 1.3528828 1.067702256 1.012413743 1.03289108 1.237978021 1 17.86417623 -6.268374116 24.09091396 1.068641235 1.306704712 0.374681411 0.149798003 367.5577923 1276871.573 0.052209962 0.047074399 5.39E-07 6.268374116 0.238063477 LALGEPPPYGAAPIGIPRPPPPRPGMHS(ph)PPPRPAPSPGTWESQPAR ddPTM_HeLa_A485_30min_R1 2 LALGEPPPYGAAPIGIPRPPPPRPGMHSPPPRPAPSPGTWESQPAR 46 3 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;G3V5H0;G3V4K1;G3V4U6 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 LALGEPPPYGAAPIGIPRPPPPRPGMHS(0.825)PPPRPAPS(0.066)PGT(0.102)WES(0.007)QPAR;LALGEPPPYGAAPIGIPRPPPPRPGMHS(0.993)PPPRPAPS(0.006)PGT(0.001)WESQPAR ; 164.83 1.80E-16 1750530000 285901 356220 344750 308389 391340 354100 412470 504440 351240 404480 TRUE FALSE FALSE 349498.6911 397876.8303 472287.3712 325235.5102 352376.8155 372640.1285 324342.4149 380725.2991 421730.6462 303650.5799 1.150989704 1.310311446 1.555364628 1.071084766 1.160468113 1.227200451 1.068143572 1.253827011 1.388868239 1 18.2120526 -5.292643111 24.99956877 1.175767326 1.336031084 0.243527084 0.138140974 1002.927572 803515.5921 0.03926424 0.058245115 5.10E-06 5.292643111 0.160263758 LALGEPPPYGAAPIGIPRPPPPRPGMHS(ph)PPPRPAPSPGTWESQPAR ddPTM_HeLa_A486_30min_R1 1 LALGEPPPYGAAPIGIPRPPPPRPGMHSPPPRPAPSPGTWESQPAR 46 3 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;G3V5H0;G3V4K1;G3V4U6 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 LALGEPPPYGAAPIGIPRPPPPRPGMHS(0.999)PPPRPAPS(0.001)PGTWESQPAR 99.713 7.70E-06 1371200000 256710 213510 176060 89303 220450 241460 259090 268890 190300 347320 TRUE FALSE FALSE 238715.9547 196590.69 244235.1471 207901.8971 192799.1054 211671.1202 194262.9416 207669.6168 206795.3572 260348.8113 0.91690818 0.755105003 0.938107402 0.798551359 0.740541524 0.813028948 0.74616412 0.79765917 0.794301138 1 17.99008629 -4.238932635 23.45363984 0.812013394 0.916908444 0.107139035 0.080388812 5278.130319 5499995.312 0.018892213 0.867267581 5.77E-05 4.238932635 0.10489505 LALGIPLPELR ddPTM_HeLa_A486_30min_R1 1 LALGIPLPELR 11 0 F8VPD4;P27708 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 0 122.13 0.002614 0 5635.1 6670.2 6363.6 3477.8 8223.9 6518.7 6160.8 7265.7 6135.8 6826.8 FALSE FALSE TRUE 5240.10859 6141.62906 8827.756343 8096.494158 7192.381777 5714.489071 4619.302678 5611.458719 6667.656084 5117.324845 1.023993737 1.200164001 1.725072496 1.582173187 1.405496425 1.11669461 0.902679196 1.096560975 1.302957363 1 12.3211741 -6.287083089 5.171283121 1.075615163 1.407506983 0.358663082 0.20242999 0.227537961 17.87221506 0.078189868 0.070973443 5.16E-07 6.287083089 0.33189182 LALLGLAQPSEKPSSPS(ph)PDLPFTTPAPK ddPTM_HeLa_A486_30min_R1 1 LALLGLAQPSEKPSSPSPDLPFTTPAPK 28 1 A0A0C4DGU2;Q9Y4U1 A0A0C4DGU2 MMACHC Methylmalonic aciduria and homocystinuria type C protein 1 0 LALLGLAQPS(0.027)EKPS(0.134)S(0.134)PS(0.688)PDLPFT(0.008)T(0.008)PAPK 61.37 0.0089344 163680000 20689 21641 10637 10352 21506 20082 22804 25238 20209 28928 TRUE FALSE FALSE 19238.80794 19926.08834 14755.93127 24099.97916 18808.51694 17604.48702 17098.198 19491.85834 21960.73239 21684.24051 0.887225353 0.918920279 0.680491035 1.111405269 0.867381864 0.811856288 0.788508041 0.898895137 1.012750822 1 14.40435929 -7.689942554 4.443537 1.007481452 0.867350752 0.219914021 0.103501093 0.315104083 11.43268767 0.080369572 0.026530816 2.04E-08 7.689942554 -0.140130699 LALLLSQFVGSQSVR ddPTM_HeLa_A485_30min_R1 2 LALLLSQFVGSQSVR 15 0 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 0 ; ; 276.47 3.43E-52 49126000 50919 62887 72197 59927 89917 51251 70376 58562 58776 89682 FALSE FALSE TRUE 62245.75588 70241.08761 98905.67467 63200.66027 80964.54776 53934.42311 55339.59268 44199.57768 70571.80407 67325.92787 0.924543602 1.043299214 1.469057728 0.93872691 1.20257604 0.80109439 0.82196554 0.656501575 1.048211385 1 16.03887459 -6.266554937 24.96283712 0.841361602 1.121427466 0.330975782 0.176012085 461.7168979 2253072.336 0.060322273 0.054828432 5.41E-07 6.266554937 0.280065864 LALLLSQFVGSQSVR ddPTM_HeLa_A486_30min_R1 2 LALLLSQFVGSQSVR 15 0 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 0 ; ; 357.99 3.60E-116 45504000 64202 68840 62273 23149.8 73635 57860 72358 68975 59350 67692 FALSE FALSE TRUE 59701.77134 63384.86769 86386.77333 53893.90433 64399.01168 50721.82148 54253.26308 53270.89821 64494.50579 50741.4826 1.17658705 1.249172559 1.70248816 1.062127111 1.269159047 0.999612524 1.06920926 1.049849068 1.27104102 1 15.63087805 LALPGFS(ph)TPR ddPTM_HeLa_A485_30min_R1 1 LALPGFSTPR 10 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 LALPGFS(0.5)T(0.5)PR 66.435 0.017538 13501000 38750 43599 45227 37497 53573 42242 47642 49749 38232 52383 TRUE FALSE FALSE 47369.80381 48697.52379 61958.34935 39545.36616 48239.08401 44453.7258 37462.8975 37547.97975 45904.81172 39324.88214 1.204575862 1.238338709 1.575550796 1.005606731 1.226680956 1.130422353 0.952651234 0.954814807 1.167322296 1 15.26315482 -5.909701139 1.135092342 1.023614741 1.307799817 0.391918838 0.139196973 0.493296291 1.350339105 0.063055915 0.079994927 1.23E-06 5.909701139 0.284185076 LALPGFST(ph)PR ddPTM_HeLa_A485_30min_R1 1 LALPGFSTPR 10 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 LALPGFS(0.194)T(0.806)PR 81.017 0.033882 60193000 97530 96631 101930 92274 122930 97727 103050 100230 95088 126350 TRUE FALSE FALSE 119225.212 107931.1549 139638.1487 97314.69497 110690.6576 102843.8346 81032.52566 75648.43535 114171.2894 94853.2703 1.25694361 1.137874894 1.472149017 1.025949813 1.166967224 1.084241316 0.85429343 0.797531125 1.20366213 1 16.53340989 -6.017635524 1.230466026 0.955750558 1.256667685 0.402319184 0.14409149 0.438920139 1.38708302 0.064376772 0.072314182 9.60E-07 6.017635524 0.300917127 LALPGFST(ph)PR ddPTM_HeLa_A486_30min_R1 1 LALPGFSTPR 10 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 LALPGFS(0.038)T(0.962)PR 87.568 0.017579 87802000 91963 115620 85706 47569 120050 103980 107090 112580 85816 106500 TRUE FALSE FALSE 85516.8686 106457.8501 118893.6585 110743.036 104992.2096 91152.00479 80294.94932 86947.9916 93254.59998 79831.7068 1.071214334 1.333528424 1.489303727 1.387206167 1.315169295 1.141802029 1.005802738 1.089141083 1.168139875 1 16.28467424 -6.332348321 3.288636318 1.073355062 1.335464656 0.55534024 0.107693575 0.201005109 4.272588832 0.042151232 0.037391187 4.65E-07 6.332348321 0.262109594 LALS(ph)PEDKPIRLS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 LALSPEDKPIRLSPSK 16 2 H9KVB4;O15417;O15417-2;O15417-3 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 2 0 LALS(1)PEDKPIRLS(0.861)PS(0.139)K;LALS(1)PEDKPIRLS(0.885)PS(0.115)K ; 109.05 0.00013694 174910000 267090 164532 116796 483780 237320 224930 352420 268240 188680 677020 TRUE FALSE FALSE 326503.2491 183772.5862 160003.7007 510207.6764 213691.5875 236706.987 277122.588 202453.7194 226546.3453 508251.3736 0.64240505 0.36157814 0.314812136 1.003849085 0.420444683 0.46572818 0.545247101 0.398333836 0.445736809 1 18.95518268 -10.13946021 3.921092513 1.000179804 0.508952889 0.381223869 0.186920804 218128506.5 350155018.4 552281.3374 0.046587725 7.25E-11 10.13946021 -0.491226915 LALS(ph)PEDKPIRLS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 LALSPEDKPIRLSPSK 16 2 H9KVB4;O15417;O15417-2;O15417-3 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 2 0 LALS(1)PEDKPIRLS(0.861)PS(0.139)K 72.644 0.00491 171930000 328180 288210 115320 191140 214790 371570 478000 395320 231450 574590 TRUE FALSE FALSE 305176.2767 265371.19 159974.9924 444983.5797 187849.0354 325729.4712 358399.3442 305314.2658 251512.2724 430708.924 0.708544123 0.616126519 0.371422516 1.033142233 0.436139176 0.756263576 0.832114972 0.708864499 0.583949527 1 18.71635369 -14 0.197750602 2.433244768 0.620631007 0.226455642 0.180166532 210.0722712 2.07365672 119.2333194 0.432762648 1.00E-14 14 -1.812613761 LALS(ph)PLSLGK ddPTM_HeLa_A485_30min_R1 2 LALSPLSLGK 10 0 P49454 P49454 CENPF Centromere protein F 1 0 LALS(0.998)PLS(0.002)LGK;LALS(0.981)PLS(0.019)LGK ; 190.36 6.37E-10 2154100000 4083100 4004500 3478800 4842600 5424000 4125300 5352000 4863200 3969300 6131300 TRUE FALSE FALSE 4991371.508 4472791.44 4765752.885 5107138.976 4883967.515 4341294.329 4208501.478 3670492.575 4765902.101 4602879.748 1.084401892 0.971737626 1.035385051 1.109552988 1.061067806 0.943169182 0.914319232 0.797433949 1.03541747 1 22.13410532 -6.331138855 4.443340841 0.921466633 1.05027305 0.407764653 0.067764955 0.210689981 8.103847125 0.024276114 0.021488871 4.67E-07 6.331138855 0.128806416 LALS(ph)PLSLGK ddPTM_HeLa_A486_30min_R1 2 LALSPLSLGK 10 0 P49454 P49454 CENPF Centromere protein F 1 0 LALS(0.999)PLS(0.001)LGK;LALS(0.959)PLS(0.041)LGK ; 200.67 9.26E-14 2715200000 4874500 5361400 3204900 1860710 4855200 5013400 5615500 5485700 3993900 5409300 TRUE FALSE FALSE 4532822.722 4936543.138 4445923.11 4331826.915 4246215.543 4394897.681 4210442.505 4236725.862 4340094.468 4054776.071 1.117897177 1.217463813 1.096465756 1.068327039 1.047213328 1.083881724 1.038390883 1.044872957 1.070366006 1 21.95119081 -4.979950397 4.058825366 1.054244417 1.167768962 0.685045751 0.031380043 0.106511295 4.02223789 0.007937961 0.016803757 1.05E-05 4.979950397 0.113524545 LALS(ph)PLSLGKENLAESSKPTAGGSR ddPTM_HeLa_A485_30min_R1 1 LALSPLSLGKENLAESSKPTAGGSR 25 2 P49454 P49454 CENPF Centromere protein F 1 0 LALS(0.818)PLS(0.182)LGKENLAESSKPTAGGSR 161.68 4.36E-14 264300000 133320 241390 128250 95323 343590 321590 434620 759460 194450 143320 TRUE FALSE FALSE 162976.5741 269618.4607 175695.0119 100530.2541 309380.9732 338427.9551 341759.8865 573201.2442 233474.3314 107592.9616 1.514751259 2.505911694 1.632960087 0.934357161 2.875475947 3.14544697 3.176414901 5.327497595 2.169977737 1 16.71522418 -5.91629482 6.25030673 3.222878306 1.71266234 0.239819438 1.08517382 0.262416001 15.70435106 0.330545371 0.37577472 1.21E-06 5.91629482 -1.510215966 LALSLFRPGGR ddPTM_HeLa_A486_30min_R1 1 LALSLFRPGGR 11 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 0 0 73.499 0.032126 19146000 10659 10453 13290 2295.9 21307 7835 7000.5 10402 8778.8 8947.2 FALSE FALSE TRUE 9911.859143 9624.666211 18436.24392 5344.971228 18634.47738 6868.39736 5248.900856 8033.691674 9539.753452 6706.762884 1.477890201 1.435068807 2.748903493 0.796952467 2.778460742 1.024100222 0.782628065 1.197849367 1.422408041 1 12.71140088 LALYNLLAYVK ddPTM_HeLa_A485_30min_R1 1 LALYNLLAYVK 11 0 Q13325-2;Q13325 Q13325-2 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 0 0 161.92 1.84E-05 2018100 2631.5 2827 2549.1 2561.5 3160 1623.7 2892.1 2890 1879.1 3604.7 FALSE FALSE TRUE 3216.868096 3157.593058 3492.118167 2701.428259 2845.379305 1708.714421 2274.179209 2181.222969 2256.218134 2706.11463 1.188740514 1.166836402 1.290454635 0.998268229 1.051462962 0.631427214 0.840385394 0.806034949 0.833748175 1 11.40200724 -5.769455826 1.794712696 0.816308675 1.202618893 0.695180522 0.106678616 0.178282593 1.186369637 0.03596812 0.047258677 1.70E-06 5.769455826 0.386310218 LALYNLLAYVK ddPTM_HeLa_A486_30min_R1 1 LALYNLLAYVK 11 0 Q13325-2;Q13325 Q13325-2 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 0 0 192.14 5.60E-14 0 3381 3391.5 1935.5 1387.7 3697.2 2506.4 3886.7 3818.9 2649.3 2843 FALSE FALSE TRUE 3144.00936 3122.745188 2684.977434 3230.63573 3233.462701 2197.185851 2914.206551 2949.419836 2878.943457 2131.094295 1.47530279 1.465324737 1.259905505 1.515951564 1.517278099 1.031012967 1.367469547 1.383993117 1.350922605 1 11.05737871 -6.219177947 24.99976821 1.259478234 1.441248336 0.3649837 0.14178832 654.5758113 387214.6653 0.046808486 0.046808048 6.04E-07 6.219177947 0.181770102 LAMAIPDKWIQLLK ddPTM_HeLa_A485_30min_R1 1 LAMAIPDKWIQLLK 14 1 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 165.73 1.45E-07 2528300 8004.7 7158.9 5389.6 9085.6 9973.1 7872.2 7821 8315.3 5061.5 13169 FALSE FALSE TRUE 9785.317899 7996.071081 7383.43732 9581.923322 8980.143146 8284.376219 6149.979458 6275.959637 6077.296623 9886.210657 0.989794598 0.80881051 0.746841998 0.969221035 0.908350374 0.83797286 0.622076514 0.634819533 0.614724573 1 13.27120193 -6.638954154 5.60742202 0.688444275 0.876888613 0.275144933 0.124037251 0.240442901 10.87359039 0.046692994 0.035794614 2.30E-07 6.638954154 0.188444338 LAMAIPDKWIQLLK ddPTM_HeLa_A486_30min_R1 2 LAMAIPDKWIQLLK 14 1 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 ; ; 166.48 1.33E-07 12609700 24773.2 27532.8 19319.9 9209.2 27644.4 26535.9 30204.7 29792.5 23815.9 34380 FALSE FALSE TRUE 23036.72661 25351.00066 26801.08268 21439.48301 24176.98158 23262.17046 22647.16459 23009.39812 25880.28139 25771.02422 0.893900313 0.983701712 1.039969636 0.831922039 0.938145934 0.902648271 0.878784032 0.892839878 1.004239535 1 14.65346226 -7.773694137 24.93752538 1.002119856 0.922030236 0.262987069 0.054763611 363.3838966 739435.2809 0.053492972 0.014225888 1.68E-08 7.773694137 -0.08008962 LAMQEFMILPVGAANFR ddPTM_HeLa_A485_30min_R1 8 LAMQEFMILPVGAANFR 17 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;;;;;; ;;;;;;; 269.93 1.34E-42 319992000 251903 314583 323880 273669 358890 367736 417359 472945 283459 356916 FALSE FALSE TRUE 307937.9533 351370.7453 443696.6898 288618.8445 323157.6515 386990.0883 328186.8401 356954.4972 340346.6213 267943.4098 1.14926489 1.311361775 1.655934327 1.077163438 1.206066803 1.444297841 1.224836395 1.33220107 1.270218296 1 18.03156881 -8.140958625 6.403487026 1.000000361 1.303994944 0.253364085 0.153508272 5.464453404 248.0938175 0.147761303 0.038306908 7.23E-09 8.140958625 0.303994583 LAMQEFMILPVGAANFR ddPTM_HeLa_A486_30min_R1 10 LAMQEFMILPVGAANFR 17 0 P06733;A0A2R8Y6G6;P06733-2;K7EM90 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;;;;;;;; ;;;;;;;;; 278.27 2.13E-54 326251000 295106 361501 377142 141280.8 532063 377727 416616 450969 390112 409530 FALSE FALSE TRUE 274420.5933 332854.3442 523181.4826 328908.8423 465326.6972 331126.8832 312374.2703 348293.2033 423927.2223 306981.0224 0.893933414 1.084283131 1.704279563 1.071430539 1.515815843 1.078655875 1.017568669 1.134575683 1.380955796 1 18.22778995 LANGT(ph)S(ph)S(ph)MIVPKQR ddPTM_HeLa_A485_30min_R1 1 LANGTSSMIVPKQR 14 1 Q5T1W7;B7Z3H4;Q9Y297-2;Q9Y297 Q5T1W7 BTRC F-box/WD repeat-containing protein 1A 3 0 LANGT(1)S(1)S(1)MIVPKQR 50.653 0.035376 107870000 26042 123400 224910 16957 101100 82435 41271 61293 128690 17812 TRUE FALSE FALSE 31834.95306 137830.5566 308113.5683 17883.31797 91034.12902 86751.16913 32453.1137 46260.79565 154516.9026 13371.79621 2.380753682 10.30755737 23.04204787 1.337390856 6.807920762 6.48762274 2.426982374 3.45957977 11.55543356 1 13.70690565 LAPGGHVGR ddPTM_HeLa_A485_30min_R1 5 LAPGGHVGR 9 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ;;;; ;;;; 133.6 0.00036497 205926000 221753.9 297983 310708.3 227045.2 340962.8 298136.1 337158.5 384696.5 295615 313117.7 FALSE FALSE TRUE 271082.29 332829.5197 425652.2298 239448.1044 307015.3464 313746.0452 265121.8321 290349.0802 354942.219 235063.2199 1.153231416 1.415914918 1.810798942 1.018654065 1.306096915 1.334730484 1.127874587 1.235195707 1.509986203 1 17.84268929 -5.28733039 24.99973427 1.233396343 1.455575295 0.221725384 0.205657689 1196.329286 1155143.688 0.057641925 0.085528082 5.16E-06 5.28733039 0.222178952 LAPGGHVGR ddPTM_HeLa_A486_30min_R1 3 LAPGGHVGR 9 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ;; ;; 121.62 0.0013379 286276000 131518 163152 147005 53273 237582 143736 159532 170975 151645 164237 FALSE FALSE TRUE 122299.2674 150223.2413 203929.2729 124022.2363 207782.2502 126003.3137 119615.4062 132047.7249 164789.7107 123110.9862 0.993406609 1.220226123 1.656466894 1.007401858 1.687763673 1.023493659 0.971606271 1.072590911 1.33854594 1 16.90959999 LAPLGPLNPSYKSS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 LAPLGPLNPSYKSSPTR 17 1 Q96T17-2;Q96T17 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LAPLGPLNPSYKS(0.069)S(0.928)PT(0.003)R;LAPLGPLNPSYKS(0.014)S(0.973)PT(0.014)R ; 197.1 2.96E-25 1493100000 441100 725520 543720 407370 918940 889980 1169980 1860470 556530 576390 TRUE FALSE FALSE 539221.1732 810363.2528 744864.6541 429623.5916 827447.107 936577.9766 920004.2151 1404186.815 668220.4662 432706.5807 1.246158938 1.872777741 1.721408195 0.992875105 1.912259124 2.16446437 2.126161829 3.245124706 1.544280804 1 18.72302954 -5.989855175 23.6887427 2.149339261 1.499936015 0.153045686 0.582937615 172.9237589 403780.9877 0.175437553 0.198657047 1.02E-06 5.989855175 -0.649403247 LAPLGPLNPSYKSS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 LAPLGPLNPSYKSSPTR 17 1 Q96T17-2;Q96T17 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LAPLGPLNPSYKS(0.006)S(0.874)PT(0.12)R;LAPLGPLNPSYKS(0.045)S(0.949)PT(0.005)R ; 202.86 2.03E-25 1285420000 1063330 888330 693280 580590 1429370 879320 1467160 1527400 641200 1340100 TRUE FALSE FALSE 988796.058 817935.4956 961736.5827 1351642.861 1250085.086 770838.4387 1100061.05 1179644.363 696779.7323 1004530.237 0.984336779 0.814246764 0.957399336 1.345547213 1.244447444 0.767362106 1.095099987 1.174324395 0.69363739 1 19.93808956 -10.04668776 13.46650661 0.999997098 1.01845975 0 0.200843085 0 0 0.199598948 0.048409856 8.98E-11 10.04668776 0.018462652 LAPPS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 LAPPSPAR 8 0 O75145-2;O75145 O75145-2 PPFIA3 Liprin-alpha-3 1 0 LAPPS(1)PAR;LAPPS(1)PAR ; 74.941 0.013035 1491060000 367840 530260 493400 433840 557890 488830 542130 537520 436540 590740 TRUE FALSE FALSE 449664.739 592269.2944 675929.1921 457539.5807 502344.5127 514424.3829 426299.4967 405692.3772 524149.5738 443479.3898 1.013947321 1.335505794 1.524150181 1.031704271 1.132734743 1.159973597 0.961261124 0.914794208 1.181902893 1 18.75850753 -5.30547703 24.98726943 1.054828115 1.295631771 0.371979488 0.140831424 462.6377079 262502.92 0.040596679 0.06021501 4.95E-06 5.30547703 0.240803656 LAPPS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 LAPPSPAR 8 0 O75145-2;O75145 O75145-2 PPFIA3 Liprin-alpha-3 1 0 LAPPS(1)PAR;LAPPS(1)PAR ; 88.136 0.0042806 1231560000 401690 495150 405560 239960 548060 422160 508820 506650 379200 596520 TRUE FALSE FALSE 373533.6053 455912.5107 562603.6933 558639.0069 479317.2043 370078.1914 381507.8543 391296.8551 412069.3613 447147.5093 0.835369979 1.019602036 1.258206032 1.249339413 1.071944256 0.827642296 0.853203577 0.875095683 0.921551284 1 18.77039131 -6.183433294 5.849615666 0.885435165 1.103932334 0.385675743 0.119829998 0.241829139 14.12812619 0.043236433 0.043160336 6.55E-07 6.183433294 0.218497169 LAPS(ph)EDELTCFSK ddPTM_HeLa_A485_30min_R1 2 LAPSEDELTCFSK 13 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 LAPS(1)EDELTCFSK;LAPS(1)EDELTCFSK ; 293.53 1.48E-57 429270000 332067 277176 236160 377627 412690 315536 420920 426840 269542 443330 TRUE FALSE FALSE 405934.1585 309589.3221 323525.4114 398255.8068 371601.1346 332056.977 330987.0034 322156.8207 323636.607 332815.9899 1.21969548 0.930211683 0.97208494 1.196624618 1.116536302 0.997719422 0.994504511 0.967972785 0.972419045 1 18.34436522 -6.38136405 5.589983597 0.983199486 1.077734766 0.263855018 0.083385832 0.38105888 15.96350318 0.031156955 0.02732109 4.16E-07 6.38136405 0.094535279 LAPS(ph)EDELTCFSK ddPTM_HeLa_A486_30min_R1 1 LAPSEDELTCFSK 13 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 LAPS(1)EDELTCFSK 141.65 1.15E-07 269480000 124160 147990 103320 44641 153140 151210 185950 175380 118630 153770 TRUE FALSE FALSE 115457.0252 136262.7334 143328.271 103926.504 133931.7532 132555.2476 139423.3432 135449.8025 128912.9439 115264.9911 1.001666022 1.182169296 1.243467506 0.901631129 1.161946502 1.150004405 1.209589676 1.175116583 1.118405013 1 16.81459487 LAPVPS(ph)PEPQKPAPVS(ph)PESVK ddPTM_HeLa_A485_30min_R1 6 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 LAPVPS(1)PEPQKPAPVS(0.998)PES(0.002)VK;LAPVPS(1)PEPQKPAPVS(0.986)PES(0.014)VK;LAPVPS(1)PEPQKPAPVS(0.998)PES(0.002)VK;LAPVPS(1)PEPQKPAPVS(0.998)PES(0.002)VK;LAPVPS(1)PEPQKPAPVS(1)PESVK;LAPVPS(1)PEPQKPAPVS(0.954)PES(0.046)VK ;;;;; 246.34 1.28E-46 14689850000 7369950 5660250 3718340 10385860 7921800 7672270 12168580 11750940 5683130 13667140 TRUE FALSE FALSE 9009369.951 6322167 5093908.699 10953213.23 7133077.777 8073978.194 9568663.475 8869003.54 6823682.062 10260173.52 0.878091382 0.616185193 0.496473933 1.067546588 0.695219994 0.786924137 0.9326025 0.864410677 0.665064976 1 23.29055179 -5.250176693 24.98788279 0.846436003 0.658843694 0.267771347 0.146893234 1034.556206 2295307.191 0.039171052 0.067081133 5.62E-06 5.250176693 -0.187592309 LAPVPS(ph)PEPQKPAPVS(ph)PESVK ddPTM_HeLa_A486_30min_R1 6 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 LAPVPS(1)PEPQKPAPVS(0.958)PES(0.042)VK;LAPVPS(1)PEPQKPAPVS(0.999)PES(0.001)VK;LAPVPS(1)PEPQKPAPVS(1)PESVK;LAPVPS(1)PEPQKPAPVS(0.979)PES(0.021)VK;LAPVPS(1)PEPQKPAPVS(0.999)PES(0.001)VK;LAPVPS(1)PEPQKPAPVS(0.965)PES(0.035)VK ;;;;; 205.32 1.44E-26 15956460000 7236150 6627870 2968092 3426853 5963612 7830180 10248750 9532020 5211459 10809300 TRUE FALSE FALSE 6728933.253 6102653.443 4117416.711 7977886.968 5215600.174 6864172.003 7684404.35 7361787.129 5663192.462 8102580.923 0.830467886 0.75317402 0.508161134 0.984610588 0.643696154 0.84715871 0.948389707 0.908573108 0.698936859 1 22.94995009 -6.502355154 21.78169409 0.883701486 0.744856418 0.206996079 0.135500959 243.6729239 258611.6284 0.046976263 0.040809419 3.15E-07 6.502355154 -0.138845068 LAPVPS(ph)PEPQKPAPVSPESVK ddPTM_HeLa_A485_30min_R1 4 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK ;;; 188.22 1.15E-19 3714220000 3055820 2717060 1793070 4068890 3419180 3499490 5213000 5327040 2712740 5302720 TRUE FALSE FALSE 3735576.617 3034796.532 2456401.209 4291163.158 3078754.434 3682717.885 4099199.964 4020575.088 3257162.035 3980849.493 0.9383868 0.762348975 0.617054529 1.077951619 0.773391317 0.925108546 1.029729954 1.009979175 0.818207782 1 21.9246449 -5.265492611 24.99988454 0.943388086 0.771571992 0.331115301 0.113970442 412.3864766 2543555.699 0.031871451 0.049292001 5.43E-06 5.265492611 -0.171816095 LAPVPS(ph)PEPQKPAPVSPESVK ddPTM_HeLa_A486_30min_R1 3 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK ;; 208.12 4.58E-27 2799100000 3877900 3969300 1816380 1553680 3727730 4465600 5359300 5027600 3135430 5627400 TRUE FALSE FALSE 3606079.235 3654758.212 2519730.98 3617045.559 3260163.344 3914679.675 4018346.455 3882925.232 3407211.597 4218262.412 0.854873141 0.866413195 0.597338604 0.857472866 0.772868785 0.92803133 0.952607036 0.920503481 0.807728696 1 22.00821742 -6.262761482 24.71201008 0.918732639 0.787118021 0.375749654 0.084976991 116.653646 2180408.666 0.029273402 0.027254818 5.46E-07 6.262761482 -0.131614617 LAPVPSPEPQKPAPVS(ph)PESVK ddPTM_HeLa_A486_30min_R1 1 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 LAPVPS(0.001)PEPQKPAPVS(0.995)PES(0.005)VK 191.09 7.73E-20 1030700000 1836700 1704700 769470 740230 1727000 1923500 2375300 2296200 1362500 2496100 TRUE FALSE FALSE 1707956.815 1569613.364 1067429.391 1723292.849 1510383.556 1686198.127 1780974.817 1773405.386 1480602.597 1871060.313 0.912828305 0.838889774 0.570494379 0.921024746 0.80723403 0.901199237 0.951853238 0.947807707 0.791317408 1 20.83542463 -6.05855162 1.587637782 0.91909719 0.791310193 0.213382389 0.103255394 0.607963557 3.096702034 0.04225949 0.04484021 8.74E-07 6.05855162 -0.127786998 LAPWQAS(ph)PPHPCR ddPTM_HeLa_A485_30min_R1 1 LAPWQASPPHPCR 13 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 LAPWQAS(1)PPHPCR 70.784 0.0077255 180190000 85771 106260 108750 81708 129760 96578 113490 124100 106970 122600 TRUE FALSE FALSE 104850.463 118686.1827 148981.1505 86171.50114 116840.6388 101634.6747 89241.93437 93664.28042 128437.8978 92038.07629 1.139207459 1.2895335 1.618690399 0.936259259 1.26948154 1.104267699 0.969619727 1.017668819 1.395486553 1 16.48994321 -5.278539884 24.99803996 1.1016412 1.343182804 0.306470215 0.172358412 1001.129185 1463479.024 0.048323127 0.071869829 5.27E-06 5.278539884 0.241541604 LAPWQAS(ph)PPHPCR ddPTM_HeLa_A486_30min_R1 1 LAPWQASPPHPCR 13 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 LAPWQAS(1)PPHPCR 60.489 0.021294 222810000 48950 48250 44294 18041 55578 40455 48623 38550 35517 34393 TRUE FALSE FALSE 45518.85778 44426.49428 61445.82303 42000.35974 48606.889 35464.07342 36457.01112 29773.00654 38595.64216 25780.76894 1.765612883 1.72324163 2.383397608 1.629135261 1.885393299 1.375601849 1.414116515 1.154853318 1.497071024 1 14.65400767 -6.328537103 1.47115928 1.254423009 1.914486809 0.627111629 0.227611185 0.268123118 1.162742258 0.10367493 0.088971258 4.69E-07 6.328537103 0.6600638 LAQANGWGVMVSHR ddPTM_HeLa_A485_30min_R1 7 LAQANGWGVMVSHR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;;;;; ;;;;;; 228.33 8.11E-23 6777723000 1764977 2398045 2255219 1661077 2541461 2275801 2752521 3033357 1897797 2388773 FALSE FALSE TRUE 2157590.045 2678475.503 3089518.356 1751817.43 2288424.219 2394958.421 2164422.402 2289421.44 2278667.45 1793295.853 1.203142271 1.493604916 1.722815759 0.976870285 1.276099655 1.335506585 1.206952215 1.276655737 1.270658964 1 20.77418209 -13.66681825 0.077144018 5.29E-13 1.650963074 0.235933471 0.180476757 371.5406642 2.167479566 65.56040712 7.452973583 2.15E-14 13.66681825 1.650963074 LAQANGWGVMVSHR ddPTM_HeLa_A486_30min_R1 7 LAQANGWGVMVSHR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;;;;; ;;;;;; 207.52 9.42E-17 5718017000 1870434 2345915 2153185 706839.9 3048854 2197567 2499414 2509489 2155464 2451954 FALSE FALSE TRUE 1739326.236 2160016.152 2986955.896 1645559.009 2666438.302 1926453.527 1874034.181 1938133.136 2342301.355 1837968.759 0.946330686 1.175219188 1.625139645 0.895313917 1.450752788 1.048142694 1.019622435 1.054497323 1.274396719 1 20.80968081 LAQGS(ph)PAVAR ddPTM_HeLa_A486_30min_R1 2 LAQGSPAVAR 10 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 LAQGS(1)PAVAR;LAQGS(1)PAVAR ; 110.64 0.0007186 508550000 630540 753740 631340 201010 837030 614790 736260 720730 645390 718800 TRUE FALSE FALSE 586342.4021 694010.8973 875811.7559 467961.4385 732041.8924 538943.4605 552039.9606 556635.5124 701332.9248 538807.8014 1.088221812 1.288049088 1.625462277 0.868512737 1.35863269 1.000251776 1.024558218 1.033087329 1.301638401 1 19.03941121 -5.27257349 24.99979784 1.090690574 1.32932488 0.279684286 0.183652485 951.9836088 2137519.156 0.050681639 0.075975261 5.34E-06 5.27257349 0.238634307 LAQSNGWGVMVSHR ddPTM_HeLa_A485_30min_R1 3 LAQSNGWGVMVSHR 14 0 P13929-3;P13929-2;P13929 P13929-3 ENO3 Beta-enolase 0 0 ;; ;; 143.05 3.47E-07 576698000 308731 469443 415180 315015 605853 568209 641463 817900 416099 479472 FALSE FALSE TRUE 377407.1458 524340.2752 568772.3591 332223.4718 545532.148 597959.5446 504409.1898 617308.7426 499606.2526 359948.4544 1.04850331 1.456709339 1.580149469 0.922975131 1.515584082 1.661236594 1.401337285 1.714992063 1.387993882 1 18.4574308 LAQSNGWGVMVSHR ddPTM_HeLa_A486_30min_R1 5 LAQSNGWGVMVSHR 14 0 P13929-3;P13929-2;P13929 P13929-3 ENO3 Beta-enolase 0 0 ;;;; ;;;; 123.76 0.00033952 519185000 530569 620762 584094 224880 763165 556954 701641 688435 562056 728238 FALSE FALSE TRUE 493378.853 571570.5583 810270.8394 523532.0048 667441.7295 488242.6782 526083.0006 531693.3789 610775.4666 545882.4648 0.903818834 1.04705792 1.484332053 0.959056278 1.222683952 0.894409895 0.963729437 0.974007068 1.118877242 1 19.05823083 -6.261462801 24.99999513 0.986925467 1.130071851 0.15075461 0.157560039 4.179841345 4459001.014 0.054240996 0.05094997 5.48E-07 6.261462801 0.143146385 LAS(ph)DS(ph)DAESDSR ddPTM_HeLa_A485_30min_R1 1 LASDSDAESDSR 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 2 0 LAS(1)DS(1)DAESDSR 90.476 0.00087344 0 156640 195620 168190 185710 240630 186680 233810 240670 178530 223750 TRUE FALSE FALSE 191484.0276 218496.0573 230410.48 195854.8671 216672.0323 196454.2761 183854.5834 181645.3051 214359.3334 167973.2428 1.13996744 1.300778944 1.371709423 1.165988486 1.289919922 1.169556965 1.094546848 1.081394287 1.276151665 1 17.35787191 -6.452183611 4.022497234 1.120470707 1.257531894 0.356372519 0.089044308 0.266630883 8.302598736 0.032626844 0.027698394 3.53E-07 6.452183611 0.137061187 LAS(ph)IDEK ddPTM_HeLa_A485_30min_R1 1 LASIDEK 7 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 LAS(1)IDEK 81.525 0.01144 58014000 154590 130780 112080 265860 199860 172520 281110 220740 165110 381670 TRUE FALSE FALSE 188978.0122 146073.5834 153543.056 280383.2586 179961.2366 181552.8804 221048.552 166603.1689 198246.0625 286526.6931 0.659547668 0.509807941 0.53587697 0.978558945 0.628078434 0.633633392 0.771476296 0.581457759 0.69189387 1 18.12831002 -14 0.324865359 4.257742739 0.651734494 0.387024748 0.126518636 375.1981353 3.296128005 842.2449573 0.114585087 1.00E-14 14 -3.606008245 LAS(ph)IDEK ddPTM_HeLa_A486_30min_R1 2 LASIDEK 7 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 LAS(1)IDEK;LAS(1)IDEK ; 101.65 0.0041793 212371000 503410 584580 286350 336060 468340 738680 844750 800950 461630 1018960 TRUE FALSE FALSE 468123.5586 538255.7518 397232.3887 782364.6635 409596.4301 647549.1719 633384.6151 618591.1696 501644.4601 763805.7837 0.612882972 0.704702378 0.520069888 1.024297904 0.536257304 0.847792968 0.829248257 0.809880185 0.656769654 1 19.54284632 -13.99999983 0.037942534 2.208212408 4.03E-07 0.272414961 0.144023793 1259.900863 3.569102182 181.7256529 57.99269562 1.00E-14 13.99999983 -2.208212005 LAS(ph)LKR ddPTM_HeLa_A485_30min_R1 1 LASLKR 6 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 0 LAS(1)LKR 54.549 0.030054 193450000 141230 100580 77699 151050 149310 112920 229030 212010 189300 306170 TRUE FALSE FALSE 172646.1263 112341.9561 106443.0934 159301.479 134444.1721 118832.3166 180095.8695 160014.2151 227290.7736 229847.4536 0.751133517 0.48876746 0.463103209 0.693074805 0.584927829 0.517005147 0.783545202 0.696175714 0.988876622 1 17.81031716 -7.528780524 1.110684509 1.016731458 0.579738706 0.693850733 0.100583833 0.264660934 0.598717 0.09052018 0.031881542 2.96E-08 7.528780524 -0.436992751 LAS(ph)LKR ddPTM_HeLa_A486_30min_R1 1 LASLKR 6 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 0 LAS(1)LKR 54.549 0.030054 183730000 302480 268960 122890 104050 211090 367390 416540 494390 219870 343150 TRUE FALSE FALSE 281277.714 247646.6301 170476.2991 242233.6584 184613.1239 322065.1571 312317.2863 381828.1895 238928.5086 257223.0065 1.093516936 0.96277014 0.66275681 0.941726254 0.71771622 1.252085346 1.214188772 1.48442472 0.928876899 1 17.97266016 -6.273438372 24.86591251 1.208583813 0.872372904 0.400294204 0.181521082 650.0255336 1347065.704 0.062397532 0.055446931 5.33E-07 6.273438372 -0.336210909 LAS(ph)LSSHVTELEEDLDTAR ddPTM_HeLa_A485_30min_R1 1 LASLSSHVTELEEDLDTAR 19 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 LAS(0.332)LS(0.332)S(0.332)HVT(0.005)ELEEDLDTAR 49.577 0.030253 3985700 2098.2 4317.6 3960 2299.2 4537.7 2446.4 4617.8 3632.4 3224.8 3728.6 TRUE FALSE FALSE 2564.937351 4822.505762 5424.968789 2424.799474 4085.910655 2574.489721 3631.169306 2741.548205 3871.98778 2799.12864 0.916334217 1.72285964 1.938091988 0.866269395 1.459708067 0.91974684 1.297249885 0.979429157 1.383283257 1 11.45076208 -5.271901632 24.99152238 1.140549751 1.545471736 0.259342186 0.306017247 894.4886811 2136692.333 0.083271444 0.12500041 5.35E-06 5.271901632 0.404921986 LAS(ph)PELER ddPTM_HeLa_A485_30min_R1 6 LASPELER 8 0 P05412;P17535 P05412;P17535 JUN;JUND Transcription factor AP-1;Transcription factor jun-D 1 0 LAS(1)PELER;LAS(1)PELER;LAS(1)PELER;LAS(1)PELER;LAS(1)PELER;LAS(1)PELER ;;;;; 195.58 2.80E-06 4608890000 4820230 5245170 4508410 4323240 7051270 4718190 6239490 6335880 4111100 5107770 TRUE FALSE FALSE 5892473.534 5858547.005 6176258.47 4559407.654 6349220.8 4965227.133 4906371.99 4781995.496 4936160.061 3834496.941 1.536700544 1.527852831 1.610708931 1.189049757 1.655815847 1.294883582 1.279534725 1.247098529 1.287303168 1 21.87060589 -7.195040898 0.154816156 0.796953462 1.807004556 0.612666855 0.124042985 3.050075681 0.45043384 1.148173835 1.344772851 6.38E-08 7.195040898 1.010051094 LAS(ph)PELER ddPTM_HeLa_A486_30min_R1 4 LASPELER 8 0 P05412;P17535 P05412;P17535 JUN;JUND Transcription factor AP-1;Transcription factor jun-D 1 0 LAS(1)PELER;LAS(1)PELER;LAS(1)PELER;LAS(1)PELER ;;; 185.27 6.28E-06 3943680000 4330950 4759850 3940610 1833080 5795110 4471500 5620800 5662420 3678990 4278800 TRUE FALSE FALSE 4027372.77 4382662.151 5466519.725 4267502.879 5068233.267 3919851.793 4214416.389 4373210.576 3997887.815 3207360.63 1.255665712 1.366438844 1.704367035 1.330534159 1.580188152 1.222142517 1.313982703 1.363492005 1.24647281 1 21.61295515 -8.314337867 0.471939188 0.979750306 1.442346342 0.459623095 0.135105737 1.44384623 0.684635921 0.207328439 0.080943441 4.85E-09 8.314337867 0.462596036 LAS(ph)PMKPVPGT(ph)PPSSK ddPTM_HeLa_A485_30min_R1 2 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 LAS(1)PMKPVPGT(0.963)PPS(0.031)S(0.006)K;LAS(1)PMKPVPGT(0.996)PPS(0.002)S(0.002)K ; 107.08 0.00020676 858980000 1343590 792840 567350 2165060 1155700 1024040 1761910 1262550 898500 2737630 TRUE FALSE FALSE 1642466.96 885555.7412 777236.3744 2283331.746 1040634.45 1077657.151 1385463.535 952907.6329 1078820.708 2055189.223 0.799180407 0.430887692 0.378182391 1.111008037 0.506344836 0.52435909 0.674129428 0.463659318 0.524925246 1 20.9708398 -10.25145126 5.500177565 1.000030708 0.59784118 0.252521115 0.205648671 7.67E-05 1.04E-05 0.1973059 0.047850063 5.60E-11 10.25145126 -0.402189527 LAS(ph)PMKPVPGT(ph)PPSSK ddPTM_HeLa_A486_30min_R1 2 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 LAS(1)PMKPVPGT(0.963)PPS(0.017)S(0.02)K;LAS(1)PMKPVPGT(0.999)PPS(0.001)SK ; 92.29 0.00080953 802590000 1452600 1398000 507610 628880 975010 1633700 1856400 1726600 1026100 2146100 TRUE FALSE FALSE 1350780.241 1287217.389 704170.1863 1464064.422 852715.1542 1432150.704 1391909.085 1333490.871 1115043.174 1608702.591 0.839670582 0.800158709 0.437725525 0.910090174 0.530063891 0.890252003 0.86523705 0.828923182 0.693131956 1 20.6174662 -6.320347872 24.99941073 0.845424602 0.705615443 0.205574536 0.14868205 463.6379369 196755.7264 0.050611034 0.04463475 4.78E-07 6.320347872 -0.13980916 LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_HeLa_A485_30min_R1 2 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LAS(0.762)PS(0.146)GS(0.029)T(0.029)S(0.029)S(0.006)GLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.777)PS(0.205)GS(0.006)T(0.006)S(0.006)S(0.001)GLEVVAPEGTSAPGGGPGTLDDSATICR ; 208.33 5.67E-30 964860000 486310 552460 653330 685030 860000 526190 702850 699840 637460 854880 TRUE FALSE FALSE 594487.9818 617065.3912 895023.9543 722451.4543 774375.3804 553740.4948 552680.3557 528203.1427 765392.3749 641774.1489 0.926319614 0.961499294 1.394608923 1.125709809 1.206616661 0.862827672 0.861175784 0.823035866 1.192619516 1 19.29170615 -6.262981385 24.98912538 0.931449258 1.129226719 0.238120565 0.154933192 197.8837548 3206796.96 0.055099444 0.051200606 5.46E-07 6.262981385 0.197777461 LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_HeLa_A486_30min_R1 2 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LAS(0.192)PS(0.192)GS(0.192)T(0.192)S(0.192)S(0.039)GLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.578)PS(0.108)GS(0.122)T(0.138)S(0.026)S(0.026)GLEVVAPEGTSAPGGGPGTLDDSATICR ; 136.79 3.87E-07 696710000 109317 168676 133313 58641 196601 157244 158833 170610 132526 152099 TRUE FALSE FALSE 101654.4428 155309.4995 184935.3638 136519.2116 171941.4693 137844.834 119091.3034 131765.8274 144013.4604 114012.4204 0.891608497 1.362215616 1.622063308 1.197406485 1.508094195 1.209033485 1.044546752 1.155714675 1.263138348 1 16.79883147 -6.515162174 23.90237695 1.128535262 1.332148878 0.191305181 0.192503136 347.0100078 1074887.559 0.071522877 0.0579867 3.05E-07 6.515162174 0.203613617 LAS(ph)SVLR ddPTM_HeLa_A485_30min_R1 2 LASSVLR 7 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 0 LAS(0.5)S(0.5)VLR;LAS(0.824)S(0.176)VLR ; 114.28 0.002615 104992000 252654 298308 301739 237569 373488 307184 349094 373258 276613 316887 TRUE FALSE FALSE 308856.0107 333192.5257 413364.8125 250546.7929 336302.2233 323267.6792 274507.2151 281715.8903 332126.6919 237892.9028 1.29829855 1.400598848 1.737608847 1.053191541 1.413670687 1.35887904 1.153910906 1.184213093 1.396118539 1 17.85995271 -13.28060646 0.084203143 3.88E-11 1.662165818 0.285163269 0.171803752 253.1848513 1.724545242 48.75346021 5.301210287 5.24E-14 13.28060646 1.662165818 LAS(ph)TLVHLGEYQAAVDGAR ddPTM_HeLa_A485_30min_R1 2 LASTLVHLGEYQAAVDGAR 19 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 LAS(0.955)T(0.045)LVHLGEYQAAVDGAR;LAS(0.691)T(0.309)LVHLGEYQAAVDGAR ; 198.22 1.44E-25 47171000 21199.3 31109 34829 61565 55004 45479 41413 53704 35072 80252 TRUE FALSE FALSE 25915.01115 34746.92694 47713.69646 64928.14006 49527.60863 47860.21012 32564.77424 40533.0098 42110.6287 60246.65333 0.43014856 0.576744516 0.791972563 1.077705341 0.822080662 0.79440446 0.540524202 0.672784421 0.698970422 1 15.87859348 -13.99999962 0.030008246 1.987801014 2.86E-11 0.175244989 0.172954461 3842.930959 8.661725457 447.8082157 181.1403445 1.00E-14 13.99999962 -1.987801014 LAS(ph)TLVHLGEYQAAVDGAR ddPTM_HeLa_A486_30min_R1 2 LASTLVHLGEYQAAVDGAR 19 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 LAS(0.98)T(0.02)LVHLGEYQAAVDGAR;LAS(0.974)T(0.026)LVHLGEYQAAVDGAR ; 193.87 6.75E-19 64032000 54476 63957 63636 37140 112741 119642 88000 104677 88078 83469 TRUE FALSE FALSE 50657.51371 58888.81439 88277.56343 86463.79695 98599.97251 104881.7865 65981.46923 80844.33218 95712.67196 62567.81911 0.809641673 0.941199729 1.410910028 1.381921221 1.575889553 1.676289632 1.054559199 1.292107242 1.529742819 1 15.9331332 -4.696283566 4.244557379 1.384829616 0.842188649 0.483477599 0.203055668 0.167506283 5.844109303 0.053238005 0.150562457 2.01E-05 4.696283566 -0.542640966 LAS(ph)TSDIEEK ddPTM_HeLa_A486_30min_R1 1 LASTSDIEEK 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LAS(0.333)T(0.333)S(0.333)DIEEK 176.32 7.27E-08 128530000 211980 214370 89714 78527 158090 226730 227300 227840 175790 283640 TRUE FALSE FALSE 197121.2967 197382.5405 124453.6634 182814.8245 138260.8781 198758.3578 170427.1359 175965.8057 191027.6187 212614.6978 0.927129209 0.928357929 0.585348354 0.859840954 0.65028843 0.934828871 0.801577396 0.827627664 0.898468548 1 17.69788181 -8.123893223 0.953423682 1.001018884 0.803586058 0.218243784 0.110522124 1.105968677 2.173985003 0.105363597 0.035506018 7.52E-09 8.123893223 -0.197432826 LAS(ph)TSDIEEKENR ddPTM_HeLa_A485_30min_R1 2 LASTSDIEEKENR 13 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LAS(0.919)T(0.04)S(0.04)DIEEKENR;LAS(0.941)T(0.03)S(0.03)DIEEKENR ; 99.055 0.00042984 187300000 239385 185576 168809 320260 378190 259660 438930 420500 220700 433980 TRUE FALSE FALSE 292635.3674 207277.4989 231258.4738 337754.9929 340536.0757 273255.3961 345149.0198 317371.7157 264992.4656 325796.7728 0.898214445 0.636217164 0.709824323 1.036704538 1.045240788 0.838729597 1.05939975 0.974140146 0.813367374 1 18.31361279 -5.255020288 24.99450356 0.967510704 0.736898481 0.506232943 0.098797866 399.9985906 1557501.142 0.026622604 0.044723018 5.56E-06 5.255020288 -0.230612223 LAS(ph)VSADAEVAR ddPTM_HeLa_A486_30min_R1 2 LASVSADAEVAR 12 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 LAS(0.999)VS(0.001)ADAEVAR;LAS(0.982)VS(0.018)ADAEVAR ; 185.9 5.50E-13 344760000 578490 533760 396650 177841 558750 511420 574720 584790 452860 583010 TRUE FALSE FALSE 537940.8383 491462.9137 550243.5027 414022.8356 488666.3649 448326.2001 430918.9772 451646.0829 492114.2694 437020.5012 1.230928153 1.124576335 1.259079382 0.947376232 1.11817721 1.025869951 0.986038357 1.03346658 1.126066782 1 18.73734143 -5.255575041 24.99775521 1.036439059 1.196832796 0.62377976 0.06073974 317.7395999 1354415.708 0.015993405 0.026765768 5.55E-06 5.255575041 0.160393737 LAS(ph)YLDR ddPTM_HeLa_A485_30min_R1 1 LASYLDR 7 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 LAS(1)YLDR 72.607 0.013626 0 48484 65942 64485 84728 86779 66389 81208 89589 71071 105930 TRUE FALSE FALSE 59269.09853 73653.34328 88340.68494 89356.4761 78138.97806 69865.02538 63857.24739 67617.15728 85334.2978 79523.6005 0.745302 0.9261822 1.110873808 1.123647264 0.982588534 0.878544545 0.802997437 0.850277865 1.073068841 1 16.27909546 -6.214499991 8.096675991 0.904288601 0.990566085 0.037949084 0.121666379 0.864758635 138.2600195 0.043110421 0.042952814 6.10E-07 6.214499991 0.086277484 LAS(ph)YLDR ddPTM_HeLa_A486_30min_R1 3 LASYLDR 7 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 LAS(1)YLDR;LAS(1)YLDR;LAS(1)YLDR ;; 82.287 0.010799 101862000 201639 184997 162296 99821 245340 212791 204924 231208 206433 214419 TRUE FALSE FALSE 187505.1474 170337.164 225141.3576 232388.3327 214567.1695 186539.0099 153649.8477 178566.9856 224326.7787 160727.0868 1.166605773 1.059791274 1.400767986 1.445856684 1.334978278 1.16059473 0.955967353 1.110994974 1.395699898 1 17.29425356 -6.405423928 5.448303955 1.116509829 1.284076738 0.219047303 0.149703936 0.396097769 16.19110203 0.057887434 0.050622894 3.93E-07 6.405423928 0.167566909 LASDDRPS(ph)PPR ddPTM_HeLa_A485_30min_R1 9 LASDDRPSPPR 11 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 LASDDRPS(1)PPR;LAS(0.004)DDRPS(0.996)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR;LAS(0.005)DDRPS(0.995)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR ;;;;;;;; 103.85 0.00041466 38932150000 4397800 5626040 5112800 4980240 6732450 5585160 6413980 7038330 5134540 6425860 TRUE FALSE FALSE 5376075.438 6283956.438 7004237.481 5252297.901 6062143.639 5877590.341 5043580.776 5312168.532 6164995.081 4824011.361 1.114440874 1.302641301 1.451952941 1.088782241 1.256660315 1.218403088 1.045515941 1.101193205 1.277981045 1 22.20180187 -6.269465599 1.180327513 1.116371449 1.265892781 0.211460494 0.117449168 0.763153445 2.190608673 0.061051931 0.054609146 5.38E-07 6.269465599 0.149521332 LASDDRPS(ph)PPR ddPTM_HeLa_A486_30min_R1 7 LASDDRPSPPR 11 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 LAS(0.003)DDRPS(0.997)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR;LAS(0.001)DDRPS(0.999)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR;LASDDRPS(1)PPR ;;;;;; 92.063 0.0012171 37035530000 5574150 6319120 5268200 2065660 7258990 5848810 6448950 6833920 5290160 6444610 TRUE FALSE FALSE 5183430.87 5818369.917 7308188.127 4808960.873 6348499.787 5127243.289 4835354.5 5277985.599 5748715.328 4830837.709 1.072987996 1.204422559 1.512820047 0.99547142 1.314161263 1.061356973 1.000934991 1.092561149 1.19000382 1 22.20384196 -6.283450317 23.77062029 1.070504151 1.222905771 0.229141215 0.138413248 676.0091854 730049.8727 0.048402301 0.042730139 5.21E-07 6.283450317 0.15240162 LASDLLEWIR ddPTM_HeLa_A485_30min_R1 2 LASDLLEWIR 10 0 K7EJH8;O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4 K7EJH8;O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 237.08 1.45E-26 53558000 60071 75509 81197 61204 97575 68993 76898 74429 74569 91628 FALSE FALSE TRUE 73433.58671 84339.12071 111235.1492 64547.41954 87860.09039 72605.3668 60468.1141 56175.17105 89534.31431 68786.82589 1.067553064 1.22609409 1.617099608 0.93836892 1.277280777 1.055512678 0.879065334 0.816655956 1.301620087 1 16.06984466 -6.403525482 4.229247951 0.981882473 1.230656277 0.22214563 0.201197271 0.342268092 10.19344122 0.073741154 0.063925337 3.95E-07 6.403525482 0.248773804 LASDLLEWIR ddPTM_HeLa_A486_30min_R1 2 LASDLLEWIR 10 0 K7EJH8;O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4 K7EJH8;O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 251.23 5.25E-35 83002000 96440 121505 109453 36777 135850 104811 112842 119514 98716 109988 FALSE FALSE TRUE 89680.05402 111876.5013 151836.1329 85618.71461 118810.4262 91880.48446 84607.73808 92303.27117 107272.7824 82446.2889 1.087739123 1.356962245 1.84163696 1.038478696 1.441064575 1.114428383 1.026216452 1.119556409 1.301123238 1 16.33116694 -6.273599842 23.20771697 1.114359092 1.363040143 0.23447126 0.217270674 448.0287418 855039.2073 0.076704442 0.068241059 5.33E-07 6.273599842 0.24868105 LASDLLEWIRR ddPTM_HeLa_A485_30min_R1 2 LASDLLEWIRR 11 1 K7EJH8;O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4 K7EJH8;O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 180.88 3.00E-09 135906000 103683 281100 175914 60047 211317 266833 293810 586680 138883 96546 FALSE FALSE TRUE 126746.9256 313972.1998 240991.909 63327.21556 190277.5375 280803.9633 231035.0933 442795.8101 166755.5442 72478.859 1.748743391 4.331914217 3.3249959 0.873733616 2.625283291 3.874287857 3.187620452 6.10930989 2.30074737 1 16.14527262 -6.250549104 22.2869918 3.607051621 2.624702779 0.033625704 1.491642152 438.8370527 898079.1522 0.48842851 0.482586266 5.62E-07 6.250549104 -0.982348842 LASDLLEWIRR ddPTM_HeLa_A486_30min_R1 2 LASDLLEWIRR 11 1 K7EJH8;O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75;G3V2W4 K7EJH8;O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 196.76 4.04E-14 59212000 102767 77066 85217 35911 148643 64170 101386 103472 58892 112570 FALSE FALSE TRUE 95563.56399 70959.00949 118215.3046 83602.62284 129998.8089 56253.35783 76018.15045 79913.68438 63996.80598 84381.73929 1.132514745 0.8409285 1.400958378 0.990766765 1.540603571 0.666653216 0.900883901 0.947049504 0.758420086 1 16.3646432 -6.286117015 24.99996366 0.854184611 1.163887284 0.392810362 0.202430496 854.6426388 865802.6063 0.068811268 0.060711873 5.17E-07 6.286117015 0.309702673 LASDS(ph)DAESDSR ddPTM_HeLa_A485_30min_R1 4 LASDSDAESDSR 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LAS(0.005)DS(0.995)DAESDSR;LASDS(1)DAESDSR;LAS(0.001)DS(0.999)DAESDSR;LASDS(1)DAESDSR ;;; 289.83 1.31E-49 4361620000 2393470 2970250 2906660 2406910 3425810 2919290 3404730 3429720 2531400 3294290 TRUE FALSE FALSE 2925889.144 3317594.9 3981954.49 2538393.399 3084724.328 3072139.51 2677281.621 2588575.792 3039428.761 2473084.13 1.183093251 1.341480809 1.610116875 1.026408026 1.247318799 1.242230086 1.082567952 1.046699448 1.229003382 1 21.23787989 -5.888929583 0.93137641 1.101396792 1.349095851 0.291973189 0.145931527 0.748848034 1.414632074 0.075934842 0.104388595 1.29E-06 5.888929583 0.247699059 LASDS(ph)DAESDSR ddPTM_HeLa_A486_30min_R1 3 LASDSDAESDSR 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LASDS(1)DAESDSR;LASDS(1)DAESDSR;LASDS(1)DAESDSR ;; 350.49 7.30E-87 2926730000 2184220 2432060 2046080 755610 2724600 2420690 2305130 2241850 2210350 2393730 TRUE FALSE FALSE 2031117.457 2239334.708 2838376.972 1759098.266 2382855.262 2122049.88 1728362.093 1731429.694 2401944.918 1794324.427 1.13196779 1.248009933 1.581863864 0.980368009 1.327995777 1.182645595 0.963238346 0.964947959 1.338634687 1 20.77500933 -6.550082501 7.556347003 1.064384017 1.256692788 0.205185579 0.173868231 0.307528313 65.33293424 0.065511648 0.051167202 2.82E-07 6.550082501 0.192308771 LASELAKT(ph)PQK ddPTM_HeLa_A486_30min_R1 2 LASELAKTPQK 11 1 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 1 0 LASELAKT(1)PQK;LASELAKT(1)PQK ; 135.72 2.69E-05 326830000 484310 436640 235910 307540 594580 597730 837980 844470 376600 848630 TRUE FALSE FALSE 450362.37 402039.0562 327260.6699 715968.6622 520002.2322 523988.1499 628308.5408 652202.6157 409243.9912 636127.5243 0.707974978 0.632010156 0.514457648 1.125511214 0.817449666 0.823715576 0.987708465 1.025270234 0.6433364 1 19.27895649 -5.248186919 24.99860159 0.91346328 0.619533844 0.51144802 0.134062084 642.1573606 1211322.855 0.035553467 0.061128244 5.65E-06 5.248186919 -0.293929437 LASEYNWGGPESSDKGDPFATLSARPSTQPRPDS(ph)WGEDNWEGLETDSR ddPTM_HeLa_A486_30min_R1 1 LASEYNWGGPESSDKGDPFATLSARPSTQPRPDSWGEDNWEGLETDSR 48 3 H0YDH0;E9PPN3;E9PS17;Q96KG9-3;Q96KG9-2;Q96KG9 H0YDH0 SCYL1 N-terminal kinase-like protein 1 0 LASEYNWGGPESSDKGDPFATLSARPS(0.003)T(0.003)QPRPDS(0.995)WGEDNWEGLETDSR 164.36 2.14E-18 245630000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LASFLGFSKQS(ph)PQKK ddPTM_HeLa_A486_30min_R1 1 LASFLGFSKQSPQKK 15 2 H7C5R8;Q460N5-5;Q460N5-3;Q460N5-4;Q460N5-1;Q460N5 H7C5R8 PARP14 Poly [ADP-ribose] polymerase 14 1 0 LASFLGFSKQS(1)PQKK 90.718 0.00051901 90568000 161310 130030 68019 100370 188790 161650 257500 262950 109050 268530 TRUE FALSE FALSE 150003.002 119725.9492 94357.77841 233666.4324 165110.1978 141707.2665 193070.7764 203082.0252 118502.5418 201288.3402 0.745214561 0.594798234 0.468769221 1.160854286 0.820267074 0.704001367 0.959175163 1.008911023 0.588720349 1 17.61890408 -5.241941651 24.98574187 0.884089289 0.602114433 0.389965434 0.165321643 869.9816387 1114853.41 0.044285689 0.076559947 5.73E-06 5.241941651 -0.281974857 LASGNPAIVQDAIVESSEGEAAQQEPEHGEDTIAK ddPTM_HeLa_A486_30min_R1 1 LASGNPAIVQDAIVESSEGEAAQQEPEHGEDTIAK 35 0 Q8IZQ1;Q8IZQ1-2;H0Y9T6 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 0 0 13.641 0.037014 3148000000 180480 192900 206480 70308 244840 177850 208200 211170 160900 199650 FALSE FALSE TRUE 167829.284 177613.9015 286434.5857 163680.5772 214129.8842 155908.6752 156106.1579 163091.2008 174846.9416 149656.3405 1.121431163 1.186811737 1.913948883 1.093709606 1.430810639 1.041777948 1.043097522 1.089771407 1.168322979 1 17.19129388 -6.266705611 24.79171314 1.072611143 1.357478131 0.28805315 0.22045538 540.1620459 2542899.401 0.07703619 0.069965478 5.41E-07 6.266705611 0.284866988 LASLFPALFSR ddPTM_HeLa_A485_30min_R1 2 LASLFPALFSR 11 0 Q9UNW1-3;Q9UNW1-2;Q9UNW1 Q9UNW1-3 MINPP1 Multiple inositol polyphosphate phosphatase 1 0 0 ; ; 250.75 1.74E-35 46332000 29509 41805 43706 31429 50396 34381 45394 45990 31457 40124 FALSE FALSE TRUE 36073.17525 46693.73109 59874.66816 33145.88669 45378.39729 36181.136 35695.20107 34710.88039 37770.13136 30121.82523 1.197576009 1.550162739 1.987750334 1.100394363 1.506495604 1.201160146 1.185027826 1.152349837 1.25391244 1 14.87852157 -6.07071189 1.140757093 1.149989223 1.532796319 0.313875908 0.228901448 0.594297979 1.624990677 0.110542255 0.119277982 8.50E-07 6.07071189 0.382807096 LASLFPALFSR ddPTM_HeLa_A486_30min_R1 2 LASLFPALFSR 11 0 Q9UNW1-3;Q9UNW1-2;Q9UNW1 Q9UNW1-3 MINPP1 Multiple inositol polyphosphate phosphatase 1 0 0 ; ; 260.04 7.62E-36 36502000 35776 36552 35380 12250.1 41464 31977 39810 37399 32275 33830 FALSE FALSE TRUE 33268.28715 33655.4864 49080.08351 28518.85189 36263.19848 28032.00286 29849.11693 28884.06411 35072.62299 25358.7478 1.311905754 1.327174617 1.935430089 1.124615936 1.430007458 1.105417471 1.177073772 1.13901776 1.383058156 1 14.63019589 LASLGDTAS(ph)PLVK ddPTM_HeLa_A485_30min_R1 2 LASLGDTASPLVK 13 0 Q6P4F7-3;Q6P4F7 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 LASLGDT(0.001)AS(0.999)PLVK;LASLGDTAS(1)PLVK ; 218.16 2.79E-27 447190000 180400 175320 134280 224670 234410 191350 262750 271200 155590 297660 TRUE FALSE FALSE 220529.3576 195822.1489 183955.7599 236943.1532 211071.3173 201368.7901 206611.316 204687.7748 186815.4858 223458.84 0.986890282 0.876323125 0.823219882 1.06034361 0.944564634 0.901144882 0.924605695 0.915997661 0.836017433 1 17.76964959 -6.260883267 24.12747143 0.910868774 0.935217289 0.022941542 0.069485733 158.3789881 6871545.153 0.024205182 0.022803595 5.48E-07 6.260883267 0.024348515 LASLGDTAS(ph)PLVK ddPTM_HeLa_A486_30min_R1 4 LASLGDTASPLVK 13 0 Q6P4F7-3;Q6P4F7 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 LASLGDT(0.006)AS(0.994)PLVK;LASLGDT(0.017)AS(0.983)PLVK;LASLGDT(0.004)AS(0.996)PLVK;LASLGDTAS(1)PLVK ;;; 316.32 1.71E-68 671015000 975430 967060 606257 449982 1033200 1053310 1155560 1202960 766866 1317420 TRUE FALSE FALSE 907057.3941 890426.6436 841015.9465 1047580.837 903606.4218 923363.3215 866426.6657 929072.2684 833338.5623 987529.457 0.918511734 0.90167097 0.851636314 1.06080971 0.915017183 0.935023573 0.87736792 0.940804613 0.843861979 1 19.91346426 -6.585246817 0.004183506 1.848004222 4.42E-08 0.038259504 0.061507831 64841.43234 139.0350417 30455.57231 30954.56186 2.60E-07 6.585246817 -1.848004178 LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR ddPTM_HeLa_A485_30min_R1 3 LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR 41 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;D6RCM3;D6REK4;D6R8Z5 D6REM6 MATR3 Matrin-3 0 0 ;; ;; 408.88 1.53E-230 150064000 20404.7 42809 56097 8711.1 53089 23317.3 35025.3 37476.7 27980 21776.6 FALSE FALSE TRUE 24943.65512 47815.14016 76849.61469 9186.965335 47803.27275 24538.15777 27541.85852 28285.48056 33595.32935 16348.09439 1.52578365 2.924814295 4.700830131 0.561959401 2.924088375 1.500979698 1.684713696 1.730200468 2.054999718 1 13.99683486 -5.27552056 24.99764227 1.717117007 3.037910049 0.327317973 0.92369636 942.4604841 1673102.741 0.255558079 0.381135076 5.30E-06 5.27552056 1.320793041 LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR ddPTM_HeLa_A486_30min_R1 1 LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR 41 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;D6RCM3;D6REK4;D6R8Z5 D6REM6 MATR3 Matrin-3 0 0 403 2.09E-230 57648000 15012 21494 26848 2246.3 30797 15124 13601 17042 22248 8795.6 FALSE FALSE TRUE 13959.73632 19790.73716 37244.26461 5229.499922 26934.15309 13258.15465 10197.88594 13161.90862 24176.47455 6593.12451 2.11731726 3.001723558 5.648955144 0.793174756 4.085187994 2.010906154 1.546745542 1.996308215 3.666922188 1 12.68674661 -6.305374132 24.16891266 2.075355631 3.132385428 0.142113877 1.331901043 671.4774223 369383.5663 0.459939391 0.405631352 4.95E-07 6.305374132 1.057029796 LASPMKPVPGT(ph)PPSSK ddPTM_HeLa_A485_30min_R1 2 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 LASPMKPVPGT(0.885)PPS(0.047)S(0.068)K;LASPMKPVPGT(0.999)PPSSK ; 97.69 0.0007588 976780000 736600 643630 520260 868820 899050 784590 1057260 1006730 705180 1177200 TRUE FALSE FALSE 900454.1288 718896.9297 712725.8238 916281.4366 809537.4252 825669.9192 831367.764 759827.889 846703.1577 883745.7048 1.018906371 0.813465826 0.806482928 1.036815717 0.916029827 0.934284506 0.940731886 0.859781139 0.958084609 1 19.75327177 -13.99999998 0.221010272 1.424873353 0.906149976 0.095270855 0.073107358 379.3782497 3.797403967 71.78736352 0.140786088 1.00E-14 13.99999998 -0.518723377 LASPMKPVPGT(ph)PPSSK ddPTM_HeLa_A486_30min_R1 2 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 LASPMKPVPGT(0.96)PPS(0.033)S(0.008)K;LASPMKPVPGT(0.996)PPS(0.003)S(0.001)K ; 105.96 0.00030065 1114980000 913960 860790 541670 320340 859880 988670 1055140 1050710 729840 1197880 TRUE FALSE FALSE 849896.1237 792577.8655 751419.1304 745767.7091 752025.8323 866697.9475 791132.8119 811486.2698 793103.1188 897923.0511 0.946513315 0.88267905 0.836841341 0.83054746 0.837517014 0.96522519 0.881069721 0.903736984 0.883264015 1 19.77623229 -6.247155138 24.98318246 0.917793405 0.864020133 0.284173577 0.046326012 1204.2231 2106190.815 0.01560087 0.015529542 5.66E-07 6.247155138 -0.053773271 LASPSGST(ph)SSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_HeLa_A486_30min_R1 1 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LAS(0.236)PS(0.236)GS(0.236)T(0.28)S(0.009)S(0.002)GLEVVAPEGTSAPGGGPGTLDDSATICR 163.55 1.98E-14 655140000 149060 210120 224880 65184 229130 182760 225870 223620 145200 173100 TRUE FALSE FALSE 138611.6637 193469.326 311959.5585 151751.6462 200390.3788 160212.9294 169354.937 172706.6076 157786.0529 129754.6333 1.068259839 1.491039827 2.404226736 1.169527764 1.54437937 1.234737637 1.305193754 1.33102459 1.216034055 1 16.98542653 -5.936941758 1.615772679 1.24293291 1.61028635 0.169135394 0.344708644 0.701604133 3.757533178 0.135740745 0.158325305 1.16E-06 5.936941758 0.36735344 LASS(ph)VLR ddPTM_HeLa_A485_30min_R1 2 LASSVLR 7 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 0 LAS(0.179)S(0.821)VLR;LAS(0.329)S(0.671)VLR ; 107.9 0.0032212 114441000 221891 264798 276917 230670 330166 255130 303452 309321 261806 266291 TRUE FALSE FALSE 271249.8874 295763.8227 379360.1218 243270.918 297293.5138 268488.2123 238617.0012 233459.5398 314348.0628 199909.5544 1.356863048 1.479488179 1.897658783 1.216904908 1.487140095 1.343048425 1.193624797 1.167825822 1.57245142 1 17.6089879 -6.019799775 1.190890603 1.250411613 1.538436408 0.249982959 0.208266081 0.681515427 2.026242113 0.094652333 0.106605507 9.55E-07 6.019799775 0.288024795 LASS(ph)VLR ddPTM_HeLa_A486_30min_R1 2 LASSVLR 7 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 0 LAS(0.039)S(0.961)VLR;LAS(0.158)S(0.842)VLR ; 129.42 0.001692 146306000 168364 218685 202828 80479 252270 195776 227672 229741 183765 183720 TRUE FALSE FALSE 156562.553 201355.6042 281368.4335 187359.1792 220627.9443 171623.1476 170706.0575 177433.9895 199693.8982 137715.3162 1.136856505 1.462114816 2.043116491 1.360481785 1.602058147 1.246216851 1.239557533 1.288411445 1.450048576 1 17.07132949 -6.267816468 23.98255997 1.262541989 1.537755353 0.249919121 0.237264217 451.6579899 1698559.973 0.083924002 0.075868899 5.40E-07 6.267816468 0.275213364 LAST(ph)PFKGGTLFGGEVCK ddPTM_HeLa_A485_30min_R1 2 LASTPFKGGTLFGGEVCK 18 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 LAS(0.127)T(0.868)PFKGGT(0.004)LFGGEVCK;LAS(0.007)T(0.993)PFKGGTLFGGEVCK ; 151.89 3.21E-08 329020000 441150 371630 238160 452620 589030 473490 610110 669480 337440 658110 TRUE FALSE FALSE 539282.2956 415088.8957 326265.2947 477345.4845 530384.105 498281.2042 479755.0144 505288.9803 405161.1128 494055.2886 1.0915424 0.840166891 0.660382152 0.966178271 1.073531884 1.008553528 0.971055316 1.022737722 0.820072413 1 18.91431297 -5.494075167 24.93285879 0.98772318 0.853583459 0.176075747 0.11475608 1064.919478 921811.7509 0.032754553 0.048478061 3.21E-06 5.494075167 -0.134139721 LAST(ph)PFKGGTLFGGEVCK ddPTM_HeLa_A486_30min_R1 1 LASTPFKGGTLFGGEVCK 18 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 LAS(0.031)T(0.969)PFKGGTLFGGEVCK 154.84 2.03E-08 149180000 251300 277200 146620 173360 300020 336840 444410 437990 193270 457890 TRUE FALSE FALSE 233685.1677 255233.6625 203395.1906 403590.8411 262388.694 295284.1055 333213.9175 338269.2383 210022.7992 343231.3636 0.680838619 0.743619871 0.592589175 1.175856533 0.76446596 0.860306303 0.970814304 0.985542914 0.611898624 1 18.38882186 -5.220536699 24.99959887 0.90365787 0.679476262 0.356939873 0.145819071 582.8152065 356214.1594 0.038055102 0.065912541 6.02E-06 5.220536699 -0.224181608 LASTLVHLGEYQAAVDGAR ddPTM_HeLa_A485_30min_R1 1 LASTLVHLGEYQAAVDGAR 19 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 181.4 3.67E-18 13877000 18403 26336 25348 18015 31638 24026 28740 28687 23194 26238 FALSE FALSE TRUE 22496.68386 29415.76611 34725.28002 18999.11383 28488.00963 25283.96421 22599.46422 21651.46827 27848.82305 19697.34947 1.142117313 1.493387024 1.762941763 0.964551797 1.446286449 1.283622664 1.147335292 1.099207195 1.413836064 1 14.26571389 -6.092800471 0.832082291 1.168149728 1.417940988 0.141789414 0.221432055 1.236541234 1.886090829 0.135486466 0.15335496 8.08E-07 6.092800471 0.24979126 LASTNS(ph)SVLGADLPSSMK ddPTM_HeLa_A485_30min_R1 1 LASTNSSVLGADLPSSMK 18 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;H0YA99;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LAS(0.069)T(0.069)NS(0.499)S(0.363)VLGADLPSSMK 82.707 0.0021109 31474000 90717 82698 74120 91832 111360 85128 120620 129280 78538 120510 TRUE FALSE FALSE 110896.6837 92368.81172 101540.0724 96848.54963 100272.6074 89585.17045 94848.55163 97573.8773 94299.85621 90469.07482 1.225796593 1.020998744 1.122373282 1.070515531 1.108363356 0.990229762 1.048408551 1.078532941 1.042343545 1 16.4651371 -4.253524886 24.80737057 1.058241267 1.225796684 0.610091215 0.041160159 610.6453291 1913971.716 0.010043303 0.105831873 5.58E-05 4.253524886 0.167555417 LASVLLYSDYGIGEVPVEPLDVPLPS(ph)TIRPASPVAGSPKQPVR ddPTM_HeLa_A485_30min_R1 1 LASVLLYSDYGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVR 43 2 Q13057-2;K7EN91;Q13057 Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase 1 0 LASVLLYSDYGIGEVPVEPLDVPLPS(0.315)T(0.315)IRPAS(0.315)PVAGS(0.055)PKQPVR 87.627 2.20E-05 55094000 14154 21247 12149 14906 18392 31106 29168 66269 12306 16580 TRUE FALSE FALSE 17302.50847 23731.65183 16643.42066 15720.27704 16560.8279 32734.66206 22936.01852 50016.42384 14775.70132 12446.91113 1.390104604 1.906629811 1.337152687 1.262986203 1.330517084 2.629942619 1.842707663 4.018380409 1.18709784 1 13.60350014 -6.253052366 24.74423523 2.305967109 1.454941068 0.138827138 0.805218983 851.9031476 2513373.825 0.253695531 0.249678601 5.58E-07 6.253052366 -0.85102604 LATKS(ph)SPVKVGEK ddPTM_HeLa_A485_30min_R1 1 LATKSSPVKVGEK 13 2 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 LAT(0.014)KS(0.493)S(0.493)PVKVGEK 117.18 7.30E-05 1688000000 2309600 2065400 984570 3261200 3301100 3762200 6984200 8394700 1881800 4817000 TRUE FALSE FALSE 2823362.552 2306930.563 1348803.414 3439351.098 2972430.893 3959182.975 5491968.614 6335886.663 2259459.999 3616210.55 0.780751705 0.637941439 0.372988076 0.951092601 0.821973956 1.094843046 1.5187082 1.752079027 0.624814282 1 21.78604725 -6.082953505 1.583367753 1.280594904 0.638443111 0.382899168 0.311366415 0.362261696 1.830029713 0.127423848 0.13268147 8.26E-07 6.082953505 -0.642151792 LATKSS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 LATKSSPVK 9 1 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 LAT(0.001)KS(0.122)S(0.877)PVK;LAT(0.014)KS(0.242)S(0.744)PVK ; 72.846 0.006319 3255000000 6328400 5135500 3401000 8987400 7610400 7322600 11367000 10263500 5556400 12658800 TRUE FALSE FALSE 7736130.747 5736052.052 4659171.427 9478358.905 6852681.854 7706000.013 8938347.59 7746360.532 6671518.514 9503194.128 0.814055847 0.603592011 0.490274256 0.997386645 0.721092483 0.810885257 0.940562454 0.815132305 0.702029068 1 23.17998107 -5.259589944 24.99951175 0.843705712 0.632735841 0.402604599 0.121839446 170.7357881 2307881.465 0.033118469 0.053790127 5.50E-06 5.259589944 -0.210969871 LATKSS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 LATKSSPVK 9 1 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 LAT(0.035)KS(0.142)S(0.823)PVK;LAT(0.003)KS(0.043)S(0.954)PVK ; 92.792 0.0015088 3603300000 8916400 8113800 3381500 5163800 7378700 9886500 13196700 12614800 6083600 15272900 TRUE FALSE FALSE 8291406.404 7470832.938 4690907.36 12021587.36 6453194.642 8666804.149 9894746.08 9742685.419 6610931.346 11448466.43 0.724237299 0.652561894 0.409741111 1.050060935 0.563673282 0.75702752 0.864285722 0.851003536 0.577451258 1 23.44865102 -14 0.097600021 1.84229175 0.531047167 0.197068433 0.171432861 312.4021199 2.08170168 54.55587327 3.07656565 1.00E-14 14 -1.311244583 LATKSS(ph)PVKVGEK ddPTM_HeLa_A485_30min_R1 1 LATKSSPVKVGEK 13 2 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 LAT(0.005)KS(0.016)S(0.98)PVKVGEK 70.41 0.0048159 1872000000 2097500 1795600 943930 2885200 2821700 3625600 6300400 8092000 1878900 4784300 TRUE FALSE FALSE 2564081.639 2005579.8 1293128.987 3042811.17 2540761.64 3815430.81 4954268.07 6107424.312 2255977.996 3591662.059 0.713898356 0.558398805 0.360036375 0.847187492 0.707405541 1.062302284 1.379380351 1.700445146 0.628115329 1 21.77622018 -6.233137554 1.969294927 1.235739952 0.596598139 0.455725485 0.282218454 0.280620021 2.139719965 0.112069046 0.104831387 5.85E-07 6.233137554 -0.639141813 LATKSS(ph)PVKVGEK ddPTM_HeLa_A486_30min_R1 2 LATKSSPVKVGEK 13 2 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 LAT(0.008)KS(0.032)S(0.96)PVKVGEK;LAT(0.001)KS(0.203)S(0.796)PVKVGEK ; 97.579 0.00044924 2674300000 4782200 3150400 1311740 3470400 4053400 4764300 8027300 7897500 2373100 8701700 TRUE FALSE FALSE 4446992.475 2900750.83 1819680.858 8079266.584 3544984.776 4176529.106 6018784.636 6099411.651 2578802.219 6522737.681 0.681767793 0.444713703 0.278975017 1.238631228 0.543481119 0.640303092 0.922739029 0.935099946 0.395355807 1 22.63704618 -5.224899304 24.99967159 0.794519205 0.466108359 0.287982632 0.245719592 780.0356954 533677.1397 0.064982961 0.112549921 5.96E-06 5.224899304 -0.328410846 LATLS(ph)DQVNRR ddPTM_HeLa_A486_30min_R1 1 LATLSDQVNRR 11 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 LAT(0.027)LS(0.973)DQVNRR 113.52 0.00034433 0 86186 98152 120460 25357 129650 83222 97909 114450 85888 82536 TRUE FALSE FALSE 80144.80646 90374.07806 167105.338 59032.37747 113388.0881 72954.91578 73411.13262 88392.23343 93332.84099 61868.44838 1.295406763 1.460745831 2.700978324 0.954159657 1.832728815 1.179194205 1.186568187 1.428712627 1.508569286 1 15.91691623 LATNTS(ph)APDLK ddPTM_HeLa_A485_30min_R1 4 LATNTSAPDLK 11 0 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 LATNT(0.343)S(0.657)APDLK;LATNT(0.071)S(0.929)APDLK;LATNT(0.002)S(0.998)APDLK;LATNT(0.015)S(0.985)APDLK ;;; 212.46 2.37E-15 2724970000 6406560 6155400 4611160 8185200 7715400 6617300 9376000 9643500 5716270 10287300 TRUE FALSE FALSE 7831677.17 6875220.485 6317019.97 8632336.75 6947227.686 6963771.596 7372741.005 7278416.505 6863472.956 7722865.434 1.014089555 0.89024217 0.817963232 1.117763455 0.899566067 0.901708266 0.954663922 0.942450256 0.888721034 1 22.8807048 -10.45121533 3.161831276 1.001184821 0.935466507 0.056914944 0.077651101 56493250.58 99845685.29 636716.52 0.018953093 3.54E-11 10.45121533 -0.065718314 LATNTS(ph)APDLK ddPTM_HeLa_A486_30min_R1 3 LATNTSAPDLK 11 0 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 LATNT(0.049)S(0.951)APDLK;LATNT(0.203)S(0.797)APDLK;LATNT(0.249)S(0.75)APDLK ;; 203.11 9.79E-15 2467900000 3578550 3393220 2035200 1583970 3220480 3479010 4643680 4362860 2841450 4649880 TRUE FALSE FALSE 3327712.125 3124328.889 2823283.945 3687562.209 2816537.369 3049805.118 3481782.148 3369532.019 3087749.174 3485519.782 0.954724785 0.896373879 0.810003707 1.057966226 0.808068106 0.874992916 0.998927668 0.966722965 0.885879113 1 21.73294239 -6.752863982 24.99848161 0.960109353 0.899036398 0.147955008 0.073347881 383.3872698 1117629.847 0.027906035 0.021260051 1.77E-07 6.752863982 -0.061072954 LATQS(ph)NEITIPVTFESR ddPTM_HeLa_A485_30min_R1 4 LATQSNEITIPVTFESR 17 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 0 LAT(0.108)QS(0.892)NEITIPVTFESR;LATQS(1)NEITIPVTFESR;LAT(0.003)QS(0.997)NEITIPVTFESR;LATQS(1)NEITIPVTFESR ;;; 284.84 7.08E-60 290280000 176024 242222 253759 209662 284744 239537 267743 296621 209282 268614 TRUE FALSE FALSE 215179.9315 270547.7558 347635.0139 221115.3042 256393.8876 252078.7869 210537.5208 223874.2347 251282.9778 201653.4733 1.067077735 1.341646893 1.723922768 1.096511261 1.27145783 1.250059237 1.04405601 1.110192803 1.246112818 1 17.62151873 -6.135071754 1.207213394 1.114171349 1.34663692 0.210999742 0.178267273 0.738781606 2.230179505 0.087374616 0.088224184 7.33E-07 6.135071754 0.232465572 LATQS(ph)NEITIPVTFESR ddPTM_HeLa_A486_30min_R1 4 LATQSNEITIPVTFESR 17 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 0 LAT(0.002)QS(0.997)NEITIPVTFESR;LAT(0.048)QS(0.952)NEITIPVTFESR;LAT(0.002)QS(0.998)NEITIPVTFESR;LATQS(1)NEITIPVTFESR ;;; 282.5 1.07E-59 321819000 214485 218181 209751 106647 278465 200857 239650 254229 226806 264257 TRUE FALSE FALSE 199450.7091 200891.543 290972.2045 248279.6056 243537.3231 176077.3055 179687.0352 196346.6065 246465.7267 198085.3272 1.006892898 1.014166702 1.468923563 1.253397257 1.229456652 0.888896255 0.90711936 0.991222365 1.244240198 1 17.59576249 -6.245798833 24.45841757 0.999548515 1.203055501 0.277835389 0.151263519 848.3839457 1326688.305 0.053615707 0.053419829 5.68E-07 6.245798833 0.203506986 LATQSNEITIPVTFESR ddPTM_HeLa_A485_30min_R1 3 LATQSNEITIPVTFESR 17 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 0 0 ;; ;; 367.86 1.23E-138 108754000 85958 134153 115892 96230 142792 114308 131930 133535 116485 153582 FALSE FALSE TRUE 105079.0605 149841.0264 158765.2735 101486.8012 128575.1271 120292.9901 103742.0777 100785.3319 139862.471 115296.8339 0.911378544 1.299610938 1.377013298 0.880221927 1.115166157 1.043332987 0.899782537 0.874137897 1.213064282 1 16.81499337 -5.270133655 24.99169824 1.000397376 1.206361932 0.255171753 0.150193926 805.2763513 2314766.796 0.04206939 0.063490244 5.37E-06 5.270133655 0.205964556 LAVEALS(ph)SLDGDLAGR ddPTM_HeLa_A485_30min_R1 1 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 0 LAVEALS(0.5)S(0.5)LDGDLAGR 58.831 0.029939 6157200 16133 19937 22267 18649 26898 23139 27031 31976 20270 30808 TRUE FALSE FALSE 19721.73019 22268.45872 30504.48991 19667.74765 24219.94068 24350.52226 21255.60603 24133.83586 24338.00307 23128.13258 0.852716064 0.962829949 1.31893441 0.850382 1.047206928 1.052852935 0.919036846 1.043483981 1.052311638 1 14.49736116 -4.520515407 24.99984163 1.034911763 0.880244452 0.193456691 0.11444345 124.8442431 1320598.542 0.028369281 0.077974297 3.02E-05 4.520515407 -0.154667312 LAVEALS(ph)SLDGDLAGR ddPTM_HeLa_A486_30min_R1 1 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 0 LAVEALS(0.5)S(0.5)LDGDLAGR 60.55 0.025964 7829300 20236 25712 26540 12471 32656 25616 27649 32760 23997 25774 TRUE FALSE FALSE 18817.5609 23674.48748 36816.99877 29033.11825 28559.97997 22455.75836 20730.92776 25301.26315 26077.07928 19320.02264 0.973992694 1.225386115 1.905639525 1.502747631 1.478258101 1.162304972 1.07302813 1.309587655 1.349743723 1 14.23780916 -6.262920208 24.85844865 1.191663071 1.438435861 0.194349726 0.239930265 226.3253658 3799261.49 0.088173439 0.0819861 5.46E-07 6.262920208 0.24677279 LAVEALSS(ph)LDGDLAGR ddPTM_HeLa_A486_30min_R1 1 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 0 LAVEALS(0.312)S(0.688)LDGDLAGR 107.63 0.00023128 6831500 20490 24748 23348 10895 34777 26481 27952 29234 22220 29519 TRUE FALSE FALSE 19053.75681 22786.87835 32388.97088 25364.1106 30414.94438 23214.04346 20958.11395 22578.05637 24146.04749 22127.25026 0.861099169 1.029810667 1.463759414 1.146283894 1.374546951 1.049115601 0.947163055 1.020373345 1.091235793 1 14.43353656 -6.499058481 24.48941234 1.01378344 1.184500856 0.189146744 0.159609416 999.7136807 1027799.094 0.059106672 0.051803168 3.17E-07 6.499058481 0.170717415 LAVEAVLR ddPTM_HeLa_A485_30min_R1 2 LAVEAVLR 8 0 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 ; ; 161.6 0.00021989 79011000 85518 106343 114205 92515 137582 127380 134604 156862 101211 125355 FALSE FALSE TRUE 104541.1841 118778.8888 156454.182 97568.86019 123883.853 134049.4198 105844.7558 118391.3485 121523.1193 94106.30549 1.110883947 1.262177791 1.662526025 1.036794078 1.316424573 1.424446738 1.124736066 1.25805968 1.291338755 1 16.52200377 -11.02955318 0.341342144 0.696200303 1.297722617 0.195119447 0.167824612 62.81231661 3.241002942 15.08989556 0.138913963 9.34E-12 11.02955318 0.601522313 LAVEAVLR ddPTM_HeLa_A486_30min_R1 2 LAVEAVLR 8 0 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 ; ; 143.11 0.00077325 67110000 53179 73919 80817 25927 101292 66851 79601 81986 73193 73287 FALSE FALSE TRUE 49451.42672 68061.38923 112111.5068 60359.36628 88587.01285 58603.60331 59683.98787 63319.57754 79537.42817 54935.45818 0.900173191 1.238933678 2.040785869 1.098732372 1.612565286 1.066771904 1.086438338 1.152617629 1.447834073 1 15.74545002 -6.283425823 24.85600425 1.156252609 1.391779093 0.119761642 0.307115537 1720.164585 1944665.155 0.10921918 0.09640057 5.21E-07 6.283425823 0.235526484 LAVLSS(ph)SLTHWK ddPTM_HeLa_A485_30min_R1 2 LAVLSSSLTHWK 12 0 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LAVLS(0.011)S(0.593)S(0.396)LTHWK;LAVLS(0.015)S(0.601)S(0.384)LTHWK ; 171.73 8.76E-11 2273360000 3658000 2885700 2092500 2760700 3132000 2848800 4765000 4354400 2457600 5114800 TRUE FALSE FALSE 4471709.48 3223157.513 2866602.826 2911510.051 2820167.083 2997958.763 3746918.824 3286476.573 2950817.778 3839774.491 1.164576068 0.839413231 0.746554995 0.758250272 0.734461643 0.780764279 0.975817416 0.855903538 0.76848726 1 21.87259015 -9.556930261 14.30378875 0.999999991 0.840113681 0.114498892 0.126178861 0 0 0.125043508 0.030327505 2.77E-10 9.556930261 -0.15988631 LAVLSS(ph)SLTHWK ddPTM_HeLa_A486_30min_R1 2 LAVLSSSLTHWK 12 0 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LAVLS(0.015)S(0.595)S(0.389)LTHWK;LAVLS(0.013)S(0.768)S(0.218)LTHWK ; 176.25 2.90E-11 2705300000 2665000 3088200 2678500 371170 3567800 3537600 3598300 2977700 3526600 3161300 TRUE FALSE FALSE 2478197.262 2843479.785 3715686.933 864102.5179 3120293.256 3101166.88 2697967.281 2299742.713 3832288.527 2369689.903 1.045789687 1.199937503 1.568005555 0.36464793 1.31675172 1.308680463 1.138531787 0.970482555 1.617210979 1 21.17626685 LAVLSSS(ph)LTHWKK ddPTM_HeLa_A485_30min_R1 1 LAVLSSSLTHWKK 13 1 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LAVLSS(0.037)S(0.958)LT(0.004)HWKK 114.21 0.00019068 121660000 114730 101910 58366 78730 108040 108790 182690 199840 77096 142450 TRUE FALSE FALSE 140251.2927 113827.488 79958.01221 83030.82055 97283.15825 114486.0762 143656.7891 150828.9267 92568.46003 106939.8366 1.311497167 1.064406788 0.74769155 0.776425542 0.909699896 1.070565281 1.343342141 1.410409175 0.865612507 1 16.70643985 -6.515928596 6.306782079 1.192141909 0.948993241 0.151054946 0.207540561 0.241983368 43.47476412 0.080837623 0.066304262 3.05E-07 6.515928596 -0.243148668 LAVLSSS(ph)LTHWKK ddPTM_HeLa_A486_30min_R1 2 LAVLSSSLTHWKK 13 1 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LAVLS(0.011)S(0.088)S(0.882)LT(0.019)HWKK;LAVLS(0.001)S(0.151)S(0.842)LT(0.007)HWKK ; 125.97 2.43E-05 167047000 96345 92515 71320.6 30288.8 125881 112482 116912 106005 109492 133058 TRUE FALSE FALSE 89591.71303 85183.77447 98937.84635 70513.85711 110091.8312 98605.11447 87659.38103 81869.97557 118982.8547 99739.41074 0.898257894 0.854063342 0.991963414 0.706980887 1.103794682 0.988627402 0.878884088 0.820838773 1.192937213 1 16.60587606 -6.784318942 0.384905547 1.027877139 0.87224262 0.122727413 0.125905495 3.194728072 1.151170358 0.145290443 0.174510921 1.64E-07 6.784318942 -0.155634518 LAVNMVPFPR ddPTM_HeLa_A485_30min_R1 8 LAVNMVPFPR 10 0 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;A0A075B736;Q5SQY0;A0A0B4J269;Q13509;Q13509-2;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB1;TUBB4B;TUBB8;TUBB3;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;;;;;; ;;;;;;; 253.91 4.37E-35 887247000 710954 884973 900686 735203 1102623 949401 1114780 1236653 810178 1024485 FALSE FALSE TRUE 869103.2645 988462.8941 1233887.232 775365.2783 992841.9826 999110.1683 876598.1461 933361.9128 972773.2932 769099.7437 1.130026725 1.285220678 1.604326672 1.008146582 1.290914463 1.299064493 1.139771731 1.213577199 1.264820722 1 19.55281119 -13.84071684 0.18531454 1.64E-12 1.301348094 0.207061316 0.147123471 201.1012618 2.060598294 74.03868921 0.428474323 1.44E-14 13.84071684 1.301348094 LAVNMVPFPR ddPTM_HeLa_A486_30min_R1 5 LAVNMVPFPR 10 0 Q5JP53;P07437;Q5ST81;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;A0A075B736;Q5SQY0;A0A0B4J269;Q13509;Q13509-2;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB1;TUBB4B;TUBB8;TUBB3;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;;; ;;;; 215.1 1.57E-19 726877000 580576 764305 710446 250819 992800 715450 815940 824330 715574 722923 FALSE FALSE TRUE 539880.6205 703738.6882 985549.7176 583919.3077 868273.7665 627185.0532 611783.1819 636648.054 777600.5305 541898.3754 0.996276507 1.298654361 1.818698417 1.077543935 1.602281546 1.157385004 1.128962938 1.174847689 1.434956379 1 19.0476628 LAVYIDR ddPTM_HeLa_A485_30min_R1 2 LAVYIDR 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 151.51 0.0029601 280490000 328370 494340 479790 313760 557520 441610 547340 601210 459240 475790 FALSE FALSE TRUE 401414.7736 552148.7628 657284.2867 330899.9143 502011.3512 464732.0167 430396.3376 453762.3048 551405.2556 357184.3093 1.123830928 1.545837117 1.84018242 0.926412235 1.405468656 1.301098634 1.204969889 1.270387005 1.543755538 1 18.44630918 -5.261894419 24.99996421 1.255758346 1.507538828 0.213167185 0.233117208 68.1222964 3742748.384 0.06367917 0.101450742 5.47E-06 5.261894419 0.251780482 LAVYIDR ddPTM_HeLa_A486_30min_R1 2 LAVYIDR 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 158.38 0.0023119 271080000 373020 426040 388310 134505 500030 372250 414680 440100 356500 400690 FALSE FALSE TRUE 346873.2243 392279.0388 538674.0313 313134.4375 437311.5748 326325.5798 310922.678 339898.8373 387401.707 300354.6159 1.154878953 1.306052972 1.793460139 1.04254911 1.455984199 1.08646767 1.035185283 1.131658444 1.289814394 1 18.19630731 -6.272613488 24.61680769 1.112263802 1.35560213 0.270772978 0.198407002 844.317757 1860044.551 0.06931466 0.061716541 5.34E-07 6.272613488 0.243338328 LAWEIAMLGY(ph)ACQGNEWSFFMLFS(ph)S(ph)NFVLNRCSEINK ddPTM_HeLa_A485_30min_R1 1 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINK 37 1 Q5T8V1;Q8N4J0 Q5T8V1 C9orf41 UPF0586 protein C9orf41 3 0 LAWEIAMLGY(0.798)ACQGNEWS(0.506)FFMLFS(0.614)S(0.613)NFVLNRCS(0.469)EINK 49.854 0.0078164 710500000 273210 124280 80633 296970 168370 232990 393140 361890 154640 331480 TRUE FALSE FALSE 333984.6219 138813.4649 110462.5021 313192.7191 151606.4916 245188.9961 309142.4273 273135.9101 185674.8296 248848.1364 1.342122255 0.557824008 0.443895235 1.258569679 0.60923298 0.985295689 1.24229352 1.097600786 0.746137111 1 17.92490606 -6.504195563 24.36636023 1.041663161 0.824487484 0.07773458 0.291739696 1277.214213 1665730.519 0.103204646 0.089414974 3.13E-07 6.504195563 -0.217175677 LAWEIAMLGY(ph)ACQGNEWSFFMLFSSNFVLNRCS(ph)EINK ddPTM_HeLa_A486_30min_R1 1 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINK 37 1 Q5T8V1;Q8N4J0 Q5T8V1 C9orf41 UPF0586 protein C9orf41 2 0 LAWEIAMLGY(0.812)ACQGNEWS(0.256)FFMLFS(0.268)S(0.326)NFVLNRCS(0.338)EINK 44.898 0.018234 418090000 459780 360910 115560 48177 257240 510850 499930 430690 323910 413830 TRUE FALSE FALSE 427551.7963 332310.1772 160307.9268 112158.4907 224974.5605 447826.5209 374842.2263 332631.2889 351986.7796 310204.2744 1.378291118 1.071262405 0.516781811 0.361563331 0.725246488 1.443650387 1.208372215 1.072297568 1.134693519 1 18.24285904 -6.241056024 24.73319906 1.178606941 0.783835691 0.285820068 0.283781671 984.1986157 1194228.752 0.103805427 0.10368486 5.74E-07 6.241056024 -0.39477125 LAWVGDVFTAT(ph)PAEPRPLTSPLR ddPTM_HeLa_A485_30min_R1 1 LAWVGDVFTATPAEPRPLTSPLR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 LAWVGDVFT(0.007)AT(0.331)PAEPRPLT(0.331)S(0.331)PLR 65.25 0.014272 20712000 10814 13646 12191 9682.6 18849 16483 17237 15572 13189 18505 TRUE FALSE FALSE 13219.53699 15241.781 16700.95821 10211.53592 16972.32738 17346.02439 13554.17414 11752.94258 15835.91132 13892.04406 0.951590488 1.097158988 1.202195886 0.7350636 1.221730028 1.248630102 0.975678891 0.846019674 1.139926656 1 13.76197127 LAWVGDVFTATPAEPRPLT(ph)SPLR ddPTM_HeLa_A485_30min_R1 1 LAWVGDVFTATPAEPRPLTSPLR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 LAWVGDVFTATPAEPRPLT(0.647)S(0.353)PLR 167.11 2.60E-14 3120800000 1487900 1893600 1664400 1526700 2183600 1882300 2678300 2610300 1633900 2169700 TRUE FALSE FALSE 1818878.222 2115040.048 2280130.821 1610099.755 1966193.117 1980854.317 2106059.325 1970119.832 1961808.743 1628833.72 1.116675201 1.29849967 1.399854873 0.98849854 1.207117149 1.216118191 1.292986079 1.209527902 1.204425423 1 20.6354079 -8.452018235 2.380762318 1.000007668 1.219439374 0.277381404 0.104093721 7.285632992 36.62338055 0.101117539 0.027436565 3.53E-09 8.452018235 0.219431706 LAWVGDVFTATPAEPRPLTS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 LAWVGDVFTATPAEPRPLTSPLR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 LAWVGDVFTATPAEPRPLT(0.167)S(0.833)PLR 209.68 1.86E-29 3069000000 1190400 1375200 1196800 1110400 1580700 1307800 1651700 1821700 1160700 1596800 TRUE FALSE FALSE 1455200.373 1536017.677 1639546.123 1171058.34 1423319.958 1376274.386 1298800.802 1374925.219 1393641.843 1198747.147 1.213934379 1.28135252 1.367716392 0.976901879 1.1873396 1.148093982 1.083465187 1.146968501 1.16258199 1 20.19309595 -1 0.132931655 0.99278445 1.963224623 0.34774042 0.090917837 94.82361682 0.85092076 0.467836958 17.31567679 0.1 1 0.970440173 LAWVGDVFTATPAEPRPLTS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 LAWVGDVFTATPAEPRPLTSPLR 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 LAWVGDVFTATPAEPRPLT(0.139)S(0.861)PLR;LAWVGDVFTATPAEPRPLT(0.205)S(0.795)PLR ; 205 3.37E-29 4833200000 2291000 2380400 1832550 1042690 2784500 2306300 2911300 2914000 2039660 2818600 TRUE FALSE FALSE 2130412.731 2191768.435 2542162.437 2427435.015 2435242.046 2021772.155 2182861.947 2250545.812 2216459.371 2112804.214 1.008334192 1.037374131 1.203217232 1.148916212 1.152611316 0.956914106 1.033158649 1.065193735 1.049060465 1 21.01072765 -6.24923247 24.97075864 1.025708326 1.11338149 0.358954673 0.059361356 971.6468909 1987626.218 0.021490851 0.021327104 5.63E-07 6.24923247 0.087673164 LAYIAHPK ddPTM_HeLa_A485_30min_R1 1 LAYIAHPK 8 0 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 0 0 80.18 0.031406 161530000 319000 387470 340990 338120 446300 441280 491320 586570 425840 505270 FALSE FALSE TRUE 389960.4495 432781.246 467136.3908 356590.6394 401864.8049 464384.7385 386345.4683 442712.7878 511302.182 379315.4878 1.028063609 1.140953269 1.231524696 0.940089848 1.059447394 1.224270438 1.018533334 1.16713607 1.347960203 1 18.53303875 -7.510218701 24.23390315 1.201836079 1.096807235 0.079616901 0.116294103 808.3795676 1547425.971 0.066016855 0.029202216 3.09E-08 7.510218701 -0.105028844 LCAGIMITAS(ph)HNPK ddPTM_HeLa_A485_30min_R1 3 LCAGIMITASHNPK 14 0 Q96G03-2;Q96G03 Q96G03-2 PGM2 Phosphoglucomutase-2 1 0 LCAGIMITAS(1)HNPK;LCAGIMITAS(1)HNPK;LCAGIMIT(0.004)AS(0.996)HNPK ;; 199.15 6.75E-22 5667810000 2484290 2042910 1696491 3099200 3278010 2306600 3279060 3072270 1905220 3646240 TRUE FALSE FALSE 3036911.74 2281810.554 2324093.618 3268501.448 2951639.815 2427370.009 2578462.044 2318790.965 2287580.178 2737299.472 1.109455422 0.833599165 0.849046164 1.194060599 1.078303578 0.886775464 0.941972944 0.847108981 0.835706945 1 21.38432185 -6.287332316 23.61722525 0.895235902 1.003894488 0.193212629 0.111764406 727.9260652 663945.7879 0.042063291 0.037111894 5.16E-07 6.287332316 0.108658586 LCAGIMITAS(ph)HNPK ddPTM_HeLa_A486_30min_R1 1 LCAGIMITASHNPK 14 0 Q96G03-2;Q96G03 Q96G03-2 PGM2 Phosphoglucomutase-2 1 0 LCAGIMIT(0.004)AS(0.996)HNPK 113.11 0.00016116 194860000 131070 174170 122900 91693 194950 198010 253900 207720 135910 204080 TRUE FALSE FALSE 121882.6698 160368.1349 170490.1714 213465.9379 170497.5532 173581.5394 190371.5345 160426.6905 147690.7882 152977.0397 0.796738322 1.048315062 1.114482093 1.395411615 1.114530347 1.134690146 1.244445146 1.048697836 0.965444151 1 17.22295561 -4.296054622 2.324440784 1.141710384 0.729045679 0.416374784 0.116674818 0.516006448 3.531766777 0.031739529 0.419282272 5.06E-05 4.296054622 -0.412664705 LCCTLSSLSSAAETGRDPLDS(ph)EEEATGAQDER ddPTM_HeLa_A485_30min_R1 2 LCCTLSSLSSAAETGRDPLDSEEEATGAQDER 32 1 O43822-3;O43822-4 O43822-3 C21orf2 Protein C21orf2 1 0 LCCTLSSLSSAAETGRDPLDS(1)EEEATGAQDER;LCCTLSSLSSAAETGRDPLDS(1)EEEATGAQDER ; 196.96 2.96E-29 164843000 55184 73620 64006 47978 75203 62183 66537 85876 29689 78095 TRUE FALSE FALSE 67459.49042 82229.21859 87684.48291 50598.91665 67715.52527 65438.80573 52320.82639 64814.77635 35647.30998 58627.35373 1.150648735 1.402574282 1.495624096 0.863059876 1.155015892 1.11618215 0.892430292 1.105538153 0.608032048 1 15.83928632 -5.834967161 0.667610409 0.891792219 1.356499106 0.412217428 0.187914633 0.827919408 0.80110469 0.124616588 0.211343646 1.46E-06 5.834967161 0.464706887 LCCTLSSLSSAAETGRDPLDS(ph)EEEATGAQDER ddPTM_HeLa_A486_30min_R1 2 LCCTLSSLSSAAETGRDPLDSEEEATGAQDER 32 1 O43822-3;O43822-4 O43822-3 C21orf2 Protein C21orf2 1 0 LCCTLSSLSSAAETGRDPLDS(1)EEEATGAQDER;LCCTLSSLSSAAETGRDPLDS(0.998)EEEAT(0.002)GAQDER ; 153.65 4.00E-10 196063000 106283 136193 117963 35952 153715 111477 124052 139157 110576 123605 TRUE FALSE FALSE 98833.11055 125400.5707 163641.4328 83698.07291 134434.6314 97724.10116 93012.87751 107473.9889 120160.8167 92653.50347 1.066695881 1.353435823 1.766165624 0.903344933 1.450939536 1.054726454 1.003878688 1.159956017 1.296883682 1 16.49955791 -5.28324611 24.99643843 1.13661205 1.391232918 0.246060105 0.216739724 1164.268254 1334565.225 0.060775149 0.090228374 5.21E-06 5.28324611 0.254620869 LCCTLSSLSSAAETGRDPLDS(ph)EEEATSGAQDER ddPTM_HeLa_A485_30min_R1 1 LCCTLSSLSSAAETGRDPLDSEEEATSGAQDER 33 1 O43822-2;O43822 O43822-2 C21orf2 Protein C21orf2 1 0 LCCTLSSLSSAAETGRDPLDS(1)EEEATSGAQDER 103.3 6.20E-05 69170000 39450 60347 58515 39661 65299 57764 63769 69460 56142 58079 TRUE FALSE FALSE 48225.5164 67404.0567 80162.13351 41827.58 58797.60228 60788.43372 50144.23221 52424.82609 67409.18444 43600.97416 1.106065113 1.545930062 1.838539965 0.959326731 1.348538729 1.39419898 1.150071373 1.202377403 1.546047668 1 15.41207275 -5.268371034 24.99595428 1.245702896 1.501753549 0.213650246 0.234133098 868.7986672 3132938.971 0.065130038 0.099043674 5.39E-06 5.268371034 0.256050652 LCCTLSSLSSAAETGRDPLDS(ph)EEEATSGAQDER ddPTM_HeLa_A486_30min_R1 2 LCCTLSSLSSAAETGRDPLDSEEEATSGAQDER 33 1 O43822-2;O43822 O43822-2 C21orf2 Protein C21orf2 1 0 LCCTLSSLSSAAETGRDPLDS(1)EEEATSGAQDER;LCCTLSSLSSAAETGRDPLDS(0.985)EEEAT(0.012)S(0.002)GAQDER ; 108.45 4.68E-05 211890000 93386 105661 94736 33473 116488 78722 98536 106898 100171 98606 TRUE FALSE FALSE 86840.12365 97288.03755 131420.3163 77926.83563 101876.9888 69010.08003 73881.25059 82559.65897 108853.9029 73914.41578 1.174873977 1.316225482 1.778006562 1.054284672 1.378310141 0.933648454 0.999551303 1.116962883 1.472701932 1 16.17356815 -5.362245321 20.16687725 1.137280246 1.413392801 0.27380293 0.213655693 11.06862361 2206.63472 0.060804361 0.090187394 4.34E-06 5.362245321 0.276112555 LCDDGPQLPTS(ph)PR ddPTM_HeLa_A485_30min_R1 8 LCDDGPQLPTSPR 13 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LCDDGPQLPT(0.015)S(0.985)PR;LCDDGPQLPT(0.004)S(0.996)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.006)S(0.994)PR;LCDDGPQLPT(0.001)S(0.999)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.144)S(0.856)PR ;;;;;;; 279.55 1.06E-48 17340230000 6868260 7950300 8528400 8248450 10730160 7287620 9596030 9222540 8089860 10700680 TRUE FALSE FALSE 8396080.742 8880018.427 11683410.06 8699041.937 9661827.595 7669188.514 7545759.798 6960697.605 9713420.697 8033197.407 1.045172964 1.105415189 1.454391006 1.082886614 1.202737479 0.954686923 0.939322092 0.866491541 1.209159965 1 22.9375429 -6.259905824 24.94292785 0.982174696 1.184139037 0.321738605 0.133025438 155.5592544 2530154.157 0.045321915 0.043056159 5.50E-07 6.259905824 0.201964341 LCDDGPQLPTS(ph)PR ddPTM_HeLa_A486_30min_R1 8 LCDDGPQLPTSPR 13 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.053)S(0.947)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.001)S(0.999)PR;LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.005)S(0.995)PR ;;;;;;; 301.31 6.84E-58 20258820000 8696370 11853050 10084300 3482110 13020580 10755380 11752730 11700770 9965770 10322060 TRUE FALSE FALSE 8086799.371 10913771.15 13989211.03 8106528.056 11387417.44 9428490.568 8812072.646 9036760.097 10829610.97 7737348.991 1.045164097 1.41053107 1.808010863 1.047713896 1.471746648 1.218568605 1.13890076 1.167940093 1.399653936 1 22.88340792 -6.410296769 6.6155676 1.189050644 1.367068793 0.129514096 0.222715219 0.544573743 28.26440554 0.078940835 0.06931066 3.89E-07 6.410296769 0.178018149 LCDFGSASHVADNDITPY(ph)LVSR ddPTM_HeLa_A485_30min_R1 6 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.001)PY(0.999)LVSR;LCDFGSASHVADNDIT(0.006)PY(0.98)LVS(0.014)R;LCDFGSASHVADNDIT(0.006)PY(0.982)LVS(0.012)R;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.042)PY(0.957)LVSR ;;;;; 288.3 8.49E-73 80781900000 3862540 5858250 6204550 3033910 6856740 4891890 6060310 6820190 5125220 4955720 TRUE FALSE FALSE 4721748.697 6543321.378 8499871.238 3199644.821 6174058.89 5148021.796 4765475.26 5147527.709 6153804.643 3720350.207 1.269167803 1.758791784 2.284696538 0.86003861 1.659537018 1.383746559 1.280921149 1.383613752 1.654092841 1 21.827007 -5.263602054 24.99793294 1.348902863 1.769675989 0.283603099 0.327607957 263.3951046 3044541.833 0.089472345 0.14036508 5.45E-06 5.263602054 0.420773126 LCDFGSASHVADNDITPY(ph)LVSR ddPTM_HeLa_A486_30min_R1 7 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.014)PY(0.972)LVS(0.014)R;LCDFGSASHVADNDITPY(0.999)LVSR;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.02)PY(0.968)LVS(0.012)R;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDITPY(0.999)LVSR ;;;;;; 327.31 2.86E-113 57501930000 6062940 6946190 6992490 575658 8886410 5849380 6714510 6673390 6361670 4241980 TRUE FALSE FALSE 5637959.215 6395748.607 9700169.393 1340160.916 7771793.595 5127742.968 5034468.579 5154004.776 6913104.678 3179760.597 1.773076633 2.011393126 3.050597394 0.42146598 2.444144255 1.612619193 1.583285416 1.620878245 2.174095963 1 21.60048672 -11.27096798 0.18701815 3.87E-16 2.055987255 0.129319527 0.647097006 88.04616281 2.181392656 42.1216186 2.039708532 5.36E-12 11.27096798 2.055987255 LCLAHS(ph)PPVK ddPTM_HeLa_A485_30min_R1 2 LCLAHSPPVK 10 0 Q9UQK1 Q9UQK1 PPP1R3C Protein phosphatase 1 regulatory subunit 3C 1 0 LCLAHS(1)PPVK;LCLAHS(1)PPVK ; 107.09 0.00064917 491400000 508930 505070 447770 648870 687790 848980 1263600 1581290 721510 1238130 TRUE FALSE FALSE 622139.7227 564133.543 613418.7563 684316.1251 619311.2126 893431.28 993621.5373 1193476.148 866310.4389 929486.9771 0.669336675 0.606930013 0.659954116 0.736229922 0.666293588 0.961209035 1.068999956 1.284015998 0.932030744 1 19.82607513 -6.395017669 2.396150551 1.094995645 0.662125938 0.819577347 0.090279261 0.114709358 1.29081597 0.035572775 0.030127352 4.03E-07 6.395017669 -0.432869708 LCLAHS(ph)PPVK ddPTM_HeLa_A486_30min_R1 2 LCLAHSPPVK 10 0 Q9UQK1 Q9UQK1 PPP1R3C Protein phosphatase 1 regulatory subunit 3C 1 0 LCLAHS(1)PPVK;LCLAHS(1)PPVK ; 119.39 0.00021859 418370000 760860 1036780 705570 452030 1116950 1183420 1313880 1249630 912230 1333590 TRUE FALSE FALSE 707527.6431 954621.7769 978785.5998 1052348.684 976851.7159 1037421.673 985133.3272 965116.5282 991302.8309 999650.3838 0.707775093 0.954955645 0.979127919 1.052716731 0.977193358 1.037784499 0.985477866 0.965454067 0.991649528 1 19.93106409 -4.209848768 2.42283362 0.999511444 0.61622605 0.918970608 0.025770452 0.170909343 1.095331068 0.006820628 0.143856954 6.17E-05 4.209848768 -0.383285394 LCLS(ph)TVDLEVK ddPTM_HeLa_A485_30min_R1 3 LCLSTVDLEVK 11 0 Q8N370-4;Q8N370-2;Q8N370;Q8N370-3 Q8N370-4 SLC43A2 Large neutral amino acids transporter small subunit 4 1 0 LCLS(0.974)T(0.026)VDLEVK;LCLS(0.927)T(0.073)VDLEVK;LCLS(0.941)T(0.059)VDLEVK ;; 181.98 1.83E-10 64216000 205495 118099 79932 266744 120598 140386 192724 140046 120496 469172 TRUE FALSE FALSE 251206.6538 131909.6507 109502.173 281315.5493 108590.8397 147736.3939 151546.943 105699.4989 144678.4419 352216.0549 0.713217499 0.374513452 0.310894894 0.798701664 0.308307467 0.41944821 0.430266993 0.300098469 0.410766176 1 18.42610115 -10.49331851 6.107481043 1.000446164 0.445319871 0.507905772 0.161766189 0.0009599 7.96E-05 0.152986338 0.037076285 3.21E-11 10.49331851 -0.555126293 LCLS(ph)TVDLEVK ddPTM_HeLa_A486_30min_R1 2 LCLSTVDLEVK 11 0 Q8N370-4;Q8N370-2;Q8N370;Q8N370-3 Q8N370-4 SLC43A2 Large neutral amino acids transporter small subunit 4 1 0 LCLS(0.981)T(0.019)VDLEVK;LCLS(0.985)T(0.015)VDLEVK ; 184.1 1.57E-10 74153000 131107 163310 113659 57529 161899 181564 184251 158965 151540 227880 TRUE FALSE FALSE 121917.0763 150368.7208 157670.8087 133930.4194 141592.1178 159164.4797 138149.451 122772.1397 164675.6092 170817.3648 0.71372765 0.880289431 0.923037356 0.784056232 0.828909391 0.931781613 0.808755311 0.718733367 0.964044899 1 17.38209512 -7.928207225 8.036340784 0.999766988 0.831007689 0.44571962 0.070808774 0.205213841 18.95634856 0.068611409 0.017745586 1.18E-08 7.928207225 -0.168759299 LCLTLHNNEGSYLAHTQGK ddPTM_HeLa_A485_30min_R1 1 LCLTLHNNEGSYLAHTQGK 19 0 Q15428;K7EMT0 Q15428 SF3A2 Splicing factor 3A subunit 2 0 0 164.02 9.44E-15 31351000 28178 32837 35785 38296 55122 34576 48508 46821 40923 57051 FALSE FALSE TRUE 34446.09889 36677.00151 49023.36064 40388.01351 49633.86013 36386.3459 38143.86953 35338.07634 49135.87073 42829.23565 0.80426602 0.856354333 1.144623758 0.943001034 1.158878028 0.849567949 0.890603555 0.825092389 1.147250704 1 15.38630831 -4.54368168 24.85426371 0.984839143 0.817287984 0.241829037 0.117066515 271.7770941 324704.3171 0.029878604 0.079068177 2.86E-05 4.54368168 -0.167551159 LCLTLHNNEGSYLAHTQGK ddPTM_HeLa_A486_30min_R1 1 LCLTLHNNEGSYLAHTQGK 19 0 Q15428;K7EMT0 Q15428 SF3A2 Splicing factor 3A subunit 2 0 0 224.15 1.56E-29 27587000 72341 93998 77714 24972 113420 94328 111140 110350 86159 80578 FALSE FALSE TRUE 67270.26947 86549.25615 107806.9421 58136.07802 99193.806 82690.77042 83331.59648 85225.71392 93627.33149 60400.74433 1.113732458 1.432917046 1.784861151 0.962505987 1.642261318 1.369035619 1.379645192 1.411004366 1.55010228 1 15.88227871 -9.985136112 5.568757293 0.999999087 1.409424322 0.226034697 0.224766166 2.41E-06 4.39E-07 0.205633765 0.049873402 1.03E-10 9.985136112 0.409425235 LCNLEEGS(ph)PGSGTYTR ddPTM_HeLa_A486_30min_R1 1 LCNLEEGSPGSGTYTR 16 0 R4GNH9;R4GMQ7;B1AMU7;B1AMU3;B1AMU4;Q9Y3B2 R4GNH9 EXOSC1 Exosome complex component CSL4 1 0 LCNLEEGS(0.983)PGS(0.016)GT(0.001)YTR 154.48 2.88E-08 72787000 109490 130670 94030 69824 172650 124040 138300 115200 97217 129870 TRUE FALSE FALSE 101815.3164 120315.2333 130440.9342 162553.8007 150994.6271 108737.2059 103695.8772 88971.4748 105643.8478 97349.70669 1.045871835 1.235907507 1.339921184 1.669792403 1.551053745 1.116975178 1.065189416 0.913936753 1.085199447 1 16.57088901 -6.452349344 4.982305092 1.017825658 1.375671114 0.516021897 0.162943098 0.200382084 9.387737275 0.066512443 0.057344546 3.53E-07 6.452349344 0.357845456 LCNYLSHHLTISPQSGNFR ddPTM_HeLa_A486_30min_R1 1 LCNYLSHHLTISPQSGNFR 19 0 D6R9H8;Q9H074;D6RJ02;D6RJF2;D6REB4;Q9H074-3;Q9H074-2 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 0 0 60.564 0.014636 15007000 11744 12641 13022 4823 17308 11576 14445 15382 12567 11944 FALSE FALSE TRUE 10920.80625 11639.28112 18064.46714 11228.18774 15137.06925 10147.87082 10830.70822 11879.85439 13656.31768 8953.144658 1.219773238 1.300021564 2.017667293 1.254105476 1.690698612 1.13344207 1.209709954 1.326891817 1.52530962 1 13.12817878 -6.271038453 24.94465423 1.257666389 1.501032941 0.202774205 0.253755485 1208.414369 3140239.774 0.088756175 0.079268886 5.36E-07 6.271038453 0.243366553 LCPSCPASS(ph)PK ddPTM_HeLa_A485_30min_R1 4 LCPSCPASSPK 11 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 LCPSCPAS(0.01)S(0.99)PK;LCPSCPAS(0.061)S(0.939)PK;LCPSCPAS(0.008)S(0.992)PK;LCPSCPAS(0.077)S(0.923)PK ;;; 155.88 3.16E-07 2221170000 1593500 1385840 1020590 2484910 1873940 1487410 2349100 2176410 1202610 2998290 TRUE FALSE FALSE 1947968.577 1547901.933 1398148.711 2620654.341 1687363.954 1565288.488 1847195.595 1642642.035 1443962.796 2250871.482 0.86542861 0.687690055 0.621158837 1.164284306 0.749649177 0.695414421 0.820657958 0.729780464 0.641512768 1 21.10205226 LCPSCPASS(ph)PK ddPTM_HeLa_A486_30min_R1 5 LCPSCPASSPK 11 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 LCPSCPAS(0.024)S(0.976)PK;LCPSCPAS(0.002)S(0.998)PK;LCPSCPAS(0.093)S(0.907)PK;LCPSCPAS(0.001)S(0.999)PK;LCPSCPAS(0.004)S(0.996)PK ;;;; 240.31 8.49E-22 3076610000 3627030 3378090 1761460 2314340 3071940 3572030 4996840 4373410 2503270 6170020 TRUE FALSE FALSE 3372793.927 3110397.846 2443544.486 5387900.48 2686628.64 3131349.256 3746577.781 3377680.014 2720255.459 4625006.832 0.729251664 0.67251746 0.528333162 1.164949734 0.580891821 0.677047488 0.810069675 0.730308113 0.588162474 1 22.14102407 -10.09479168 4.545255885 1.000020602 0.723785654 0.198564316 0.16851408 49635332.96 55118828.42 8587.367256 0.039683352 8.04E-11 10.09479168 -0.276234948 LCS(ph)S(ph)SSSDTSSR ddPTM_HeLa_A486_30min_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 LCS(0.981)S(0.459)S(0.306)S(0.251)S(0.003)DTSSR 82.362 0.0024285 0 188640 215350 150270 75006 215110 200440 244380 224960 173570 239070 TRUE FALSE FALSE 175417.3101 198284.8817 208458.5684 174617.7586 188128.898 175711.7507 183233.5392 173741.5188 188615.1874 179205.3159 0.978862202 1.106467633 1.163238754 0.974400551 1.049795298 0.980505237 1.022478258 0.969510965 1.052508886 1 17.45125391 -5.28448818 24.98107965 1.007078639 1.085217362 0.323533601 0.050211102 847.0608087 918071.215 0.01389529 0.02062621 5.19E-06 5.28448818 0.078138723 LCS(ph)SSSSDTSSR ddPTM_HeLa_A485_30min_R1 2 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.972)S(0.024)S(0.001)S(0.001)S(0.002)DTSSR;LCS(0.48)S(0.48)S(0.031)S(0.003)S(0.006)DTSSR ; 188.88 4.02E-13 285330000 335500 365550 334810 364530 455370 325840 413020 407780 284930 428210 TRUE FALSE FALSE 410130.8175 408297.8926 458670.1516 384443.3509 410031.7639 342900.4786 324774.9029 307771.3156 342112.8375 321465.1276 1.275817444 1.27011566 1.426811533 1.195909969 1.275509312 1.066680175 1.010295908 0.957401874 1.064230015 1 18.29430272 -6.29045878 1.838776441 1.00052583 1.302766888 0.841157241 0.058841241 0.128719869 0.85754006 0.024194641 0.021673819 5.12E-07 6.29045878 0.302241058 LCS(ph)SSSSDTSSR ddPTM_HeLa_A486_30min_R1 2 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.988)S(0.011)SSSDTSSR;LCS(0.561)S(0.4)S(0.017)S(0.017)S(0.006)DTSSR ; 150.49 2.33E-06 0 253390 278140 186889 88232 292940 246880 287740 297850 206043 276010 TRUE FALSE FALSE 235628.6695 256099.1734 259257.4259 205408.555 256196.7336 216422.4557 215744.4086 230036.057 223902.9731 206895.2995 1.138878796 1.237820164 1.253085143 0.992814025 1.238291707 1.0460482 1.042770953 1.111847672 1.082204254 1 17.65854134 -5.677213268 0.750883431 1.060062099 1.211576402 0.331338522 0.077199932 0.928687934 1.106724977 0.043234626 0.084796867 2.10E-06 5.677213268 0.151514303 LCSPQCAEVRGFSDK ddPTM_HeLa_A485_30min_R1 1 LCSPQCAEVRGFSDK 15 1 P59044-2;P59044 P59044-2 NLRP6 "NACHT, LRR and PYD domains-containing protein 6" 0 0 76.262 0.012034 42574000 31650 17874 18660 57738 43335 26562 46025 33660 25202 89133 FALSE FALSE TRUE 38690.43331 19964.20882 25563.11051 60892.08074 39020.41524 27952.74525 36191.38276 25404.83222 30259.81023 66913.78347 0.578213207 0.298357196 0.382030565 0.910008037 0.583144656 0.41774271 0.540865886 0.379665159 0.452220883 1 16.0300158 -10.09825752 5.090269374 1.000012744 0.504075268 0.458540089 0.161467725 230524586 7.737647205 34433.16954 0.041251188 7.98E-11 10.09825752 -0.495937476 LCSPQCAEVRGFSDK ddPTM_HeLa_A486_30min_R1 1 LCSPQCAEVRGFSDK 15 1 P59044-2;P59044 P59044-2 NLRP6 "NACHT, LRR and PYD domains-containing protein 6" 0 0 69.716 0.023829 31784000 39501 82312 46396 49603 112150 107640 137420 136010 70891 101370 FALSE FALSE TRUE 36732.18388 75789.29734 64361.77373 115478.2908 98083.10124 94360.4712 103036.0625 105043.4921 77035.88896 75986.29219 0.483405399 0.997407495 0.847018217 1.519725301 1.290799938 1.241809127 1.355982238 1.382400549 1.013812975 1 16.21345156 -4.343600749 1.135092095 1.268788284 0.227692277 0.604202735 0.183241635 0.914660701 1.095763728 0.055742335 1.10014126 4.53E-05 4.343600749 -1.041096007 LCSS(ph)SSSDTSSR ddPTM_HeLa_A485_30min_R1 4 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.05)S(0.943)S(0.007)SSDTSSR;LCS(0.05)S(0.9)S(0.05)SSDTSSR;LCS(0.059)S(0.804)S(0.132)S(0.004)S(0.001)DTSSR;LCS(0.09)S(0.736)S(0.165)S(0.005)S(0.004)DTSSR ;;; 296.27 8.45E-50 6765516000 2046180 2132990 1951146 1969260 2542220 1872250 2423250 2238570 1594813 2345000 TRUE FALSE FALSE 2501345.682 2382424.626 2672956.099 2076835.687 2289107.651 1970278.115 1905502.841 1689557.198 1914877.341 1760434.657 1.420868234 1.353316135 1.518350079 1.179728926 1.300308218 1.1191998 1.082404754 0.95973866 1.087729859 1 20.74750025 -6.054405265 0.812129362 1.006175197 1.430575154 0.82006449 0.075255864 0.245162085 0.357780429 0.044216679 0.052704871 8.82E-07 6.054405265 0.424399956 LCSS(ph)SSSDTSSR ddPTM_HeLa_A486_30min_R1 4 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.001)S(0.495)S(0.495)S(0.009)SDTSSR;LCS(0.044)S(0.95)S(0.006)SSDTSSR;LCS(0.061)S(0.928)S(0.01)SSDTSSR;LCS(0.002)S(0.881)S(0.116)SSDTSSR ;;; 324.67 2.01E-61 7108230000 4679100 5397540 3542880 1615760 5392410 4626550 5413210 5245870 4033470 5109240 TRUE FALSE FALSE 4351119.253 4969819.273 4914778.018 3761570.936 4716043.656 4055773.3 4058767.603 4051499.918 4383094.427 3829853.048 1.136106059 1.297652732 1.283281096 0.982171088 1.231390238 1.058989274 1.059771107 1.057873466 1.144454989 1 21.86885761 -5.246937953 24.86285634 1.083832272 1.24487725 0.475309625 0.07795677 643.8324756 1103855.888 0.020370772 0.035068269 5.66E-06 5.246937953 0.161044978 LCSSS(ph)SSDTSSR ddPTM_HeLa_A485_30min_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.279)S(0.279)S(0.359)S(0.058)S(0.025)DTSSR 160.86 3.13E-10 436730000 230920 253190 231900 248210 308350 217740 267890 249830 188340 276050 TRUE FALSE FALSE 282287.3573 282798.368 317689.4602 261769.0838 277649.5913 229140.5297 210653.113 188558.8008 226138.1104 207235.8153 1.362155267 1.364621109 1.532985308 1.263145964 1.339776095 1.105699463 1.016489899 0.909875547 1.091211527 1 17.66091383 -6.298302875 1.545696949 0.98972412 1.397182627 0.853634029 0.073226919 0.134870355 0.642343586 0.032292478 0.028473339 5.03E-07 6.298302875 0.407458507 LCT(ph)KS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LCTKSPR 7 1 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 2 0 LCT(1)KS(1)PR 56.432 0.038026 285750000 173380 418890 234070 156960 295570 440660 427760 376610 324800 404130 TRUE FALSE FALSE 161226.9573 385695.6308 324708.1726 365410.8123 258496.8545 386295.8495 320729.9236 290864.1243 352953.9255 302933.2176 0.532219473 1.273203493 1.071880381 1.206242139 0.853313006 1.27518485 1.058747952 0.960159228 1.165121238 1 18.20864026 -4.249926611 24.88079982 1.094283887 0.532219121 0.628587756 0.130000214 1036.934714 2240927.07 0.030525033 0.473389176 5.62E-05 4.249926611 -0.562064766 LCTKS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LCTKSPR 7 1 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 LCT(0.057)KS(0.943)PR 57.859 0.019997 235110000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LCWVPLLLALGVGSGSGGGGDSR ddPTM_HeLa_A485_30min_R1 1 LCWVPLLLALGVGSGSGGGGDSR 23 0 Q9H4D0 Q9H4D0 CLSTN2 Calsyntenin-2 0 0 13.057 0.037351 902040000 247360 128140 69845 535230 108410 297390 291750 309990 173500 496810 FALSE FALSE TRUE 302384.3786 143124.8583 95683.57199 564468.2596 97616.31975 312960.8805 229415.2291 233964.4665 208319.8586 372964.4101 0.810759339 0.383749372 0.2565488 1.513464138 0.261730924 0.839117278 0.615112925 0.627310435 0.558551575 1 18.50867844 -11.16294972 2.312232437 1.833830465 0.649884358 0.083723749 0.345503111 18000591.54 3998558.849 78681988.18 0.086059613 6.87E-12 11.16294972 -1.183946107 LCWVPLLLALGVGSGSGGGGDSR ddPTM_HeLa_A486_30min_R1 1 LCWVPLLLALGVGSGSGGGGDSR 23 0 Q9H4D0 Q9H4D0 CLSTN2 Calsyntenin-2 0 0 13.057 0.037351 1012300000 436480 323240 172650 1122700 246550 578430 601210 586980 183410 1373400 FALSE FALSE TRUE 405885.006 297625.2852 239504.7037 2613702.338 215625.4 507069.1876 450780.899 453337.4677 199308.1265 1029491.701 0.394257677 0.289099256 0.232643647 2.538827983 0.20944841 0.49254325 0.437867443 0.440350774 0.193598575 1 19.97350077 LCYFLWSLEQHIPPCQDVPQK ddPTM_HeLa_A486_30min_R1 1 LCYFLWSLEQHIPPCQDVPQK 21 0 C9JYV5;E9PE95;Q6NUI2-3;Q6NUI2;Q6NUI2-4 C9JYV5 GPAT2 "Glycerol-3-phosphate acyltransferase 2, mitochondrial" 0 0 14.614 0.037819 54939000 25326 24189 15367 48617 26889 30782 33618 33344 23675 38003 FALSE FALSE TRUE 23550.77818 22272.17555 21317.51394 113182.833 23516.33089 26984.42981 25206.42083 25752.29909 25727.16806 28486.80144 0.826725957 0.78184192 0.748329502 3.973167475 0.82551672 0.947260782 0.884845597 0.904008095 0.903125895 1 14.79800602 LCYVALDFEQEMATAASS(ph)SSLEK ddPTM_HeLa_A485_30min_R1 3 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;Q6S8J3;A0A2R8YEA7;P63261;I3L4N8 P60709;P63261 ACTB;POTEE;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 LCYVALDFEQEMATAAS(0.021)S(0.785)S(0.161)S(0.033)LEK;LCYVALDFEQEMATAAS(0.124)S(0.73)S(0.124)S(0.021)LEK;LCYVALDFEQEMATAAS(0.148)S(0.684)S(0.157)S(0.011)LEK ;; 140.73 1.18E-07 138987000 101464 85559 76390 135146 134136 98765 156249 156279 93918 170315 TRUE FALSE FALSE 124034.3168 95564.38079 104649.8399 142528.6838 120780.9489 103936.1827 122865.1247 117951.3302 112766.4811 127858.6049 0.970089708 0.747422364 0.818481008 1.114736735 0.944644664 0.812899396 0.960945294 0.922513821 0.881962393 1 16.96418973 -5.306813214 0.013656002 1.796907057 2.67E-06 0.061917456 0.097846662 7126.929357 22.37625187 1375.188945 1571.288107 4.93E-06 5.306813214 -1.796904388 LCYVALDFEQEMATAASS(ph)SSLEK ddPTM_HeLa_A486_30min_R1 2 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;Q6S8J3;A0A2R8YEA7;P63261;I3L4N8 P60709;P63261 ACTB;POTEE;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 LCYVALDFEQEMATAAS(0.011)S(0.829)S(0.137)S(0.023)LEK;LCYVALDFEQEMATAAS(0.005)S(0.835)S(0.143)S(0.017)LEK ; 165.87 1.78E-14 128320000 136037 141269 97185 126597 153252 180716 214058 192771 137924 185939 TRUE FALSE FALSE 126501.5088 130074.3299 134817.6347 294724.2139 134029.7051 158421.0973 160498.4243 148881.2515 149879.3634 139378.6641 0.907610283 0.9332442 0.967275985 2.114557602 0.961622828 1.136623731 1.151527928 1.068178206 1.075339359 1 17.08865021 -7.277078495 1.227323835 1.026699817 1.187335019 0.027694283 0.332425839 2.365187078 6.279037269 0.300134294 0.114803642 5.28E-08 7.277078495 0.160635201 LCYVALDFEQEMATAASSS(ph)SLEK ddPTM_HeLa_A485_30min_R1 1 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;Q6S8J3;A0A2R8YEA7;P63261;I3L4N8 P60709;P63261 ACTB;POTEE;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 LCYVALDFEQEMATAAS(0.025)S(0.142)S(0.822)S(0.011)LEK 169.91 1.21E-14 36348000 38388 30951 27819 58702 48251 40685 60350 56791 33942 76223 TRUE FALSE FALSE 46927.27816 34570.45021 38110.40575 61908.74162 43446.96102 42815.20369 47455.72949 42862.91821 40753.84807 57222.00888 0.820091414 0.604146043 0.666009574 1.081904373 0.759270111 0.74822965 0.82932652 0.749063499 0.712205825 1 15.80428253 -11.47838073 2.214990636 3.582078415 0.774961496 0.238907777 0.120757789 5300094.726 572947.2086 68431541.38 0.03276393 3.32E-12 11.47838073 -2.807116919 LDAFLQPLSKPLSS(ph)QPQAIVTEDKTDISSGR ddPTM_HeLa_A486_30min_R1 1 LDAFLQPLSKPLSSQPQAIVTEDKTDISSGR 31 2 E7EUC9;A0A087WX20;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692 E7EUC9 MLH1 DNA mismatch repair protein Mlh1 1 0 LDAFLQPLS(0.001)KPLS(0.174)S(0.777)QPQAIVT(0.047)EDKT(0.001)DISSGR 64.668 0.0029409 65749000 34262 36543 15839 19027 36360 49488 53808 53617 34805 52782 TRUE FALSE FALSE 31860.41073 33647.19959 21972.28498 44295.81757 31799.38976 43382.67372 40344.66928 41409.57955 37821.92542 39565.04365 0.805266665 0.85042746 0.555345905 1.119569536 0.803724369 1.096489975 1.01970491 1.046620343 0.955942972 1 15.27193873 -5.272290266 24.99997598 1.003862329 0.748354747 0.563619957 0.108316169 514.63405 1185693.528 0.029437265 0.04414383 5.34E-06 5.272290266 -0.255507583 LDAQSLNLSQEDFDRYMSGQT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 LDAQSLNLSQEDFDRYMSGQTSPR 24 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 LDAQSLNLSQEDFDRYMS(0.017)GQT(0.491)S(0.491)PR 106.17 0.0004263 960840000 104440 140820 148500 20566 241470 110020 164730 196350 110010 146430 TRUE FALSE FALSE 97119.29533 129660.9103 206003.177 47878.68735 211182.581 96446.851 123512.8117 151645.3913 119545.7554 109762.9749 0.884809248 1.181280942 1.876800234 0.436200708 1.923987403 0.878682917 1.125268441 1.38157144 1.089126415 1 16.74403196 LDAQSLNLSQEDFDRYMSGQTS(ph)PR ddPTM_HeLa_A485_30min_R1 5 LDAQSLNLSQEDFDRYMSGQTSPR 24 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 LDAQSLNLSQEDFDRYMS(0.002)GQT(0.17)S(0.827)PR;LDAQSLNLSQEDFDRYMS(0.002)GQT(0.457)S(0.54)PR;LDAQSLNLSQEDFDRYMSGQT(0.057)S(0.943)PR;LDAQSLNLSQEDFDRYMSGQT(0.066)S(0.933)PR;LDAQSLNLSQEDFDRYMS(0.001)GQT(0.06)S(0.938)PR ;;;; 202.16 7.36E-29 3601886000 412000 562431 680252 473233.8 878996 776851 934807 1150041 624823 681565 TRUE FALSE FALSE 503647.9786 628202.413 931905.5224 499085.3642 791480.0719 817525.7171 735077.8478 867991.6416 750219.2449 511663.3888 0.984334603 1.227765024 1.821325393 0.975417384 1.5468765 1.597780367 1.436643434 1.69641147 1.46623593 1 18.96483548 -4.527376618 24.93787833 1.464143056 1.045192075 0.234246631 0.257871556 128.5159183 712544.6501 0.062096846 0.165708535 2.97E-05 4.527376618 -0.418950982 LDAQSLNLSQEDFDRYMSGQTS(ph)PR ddPTM_HeLa_A486_30min_R1 3 LDAQSLNLSQEDFDRYMSGQTSPR 24 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 LDAQSLNLSQEDFDRYMSGQT(0.036)S(0.963)PR;LDAQSLNLSQEDFDRYMSGQT(0.011)S(0.989)PR;LDAQSLNLSQEDFDRYMS(0.019)GQT(0.063)S(0.918)PR ;; 187.89 6.00E-21 2224710000 471710 571840 580410 217200 931830 634400 729350 802690 537780 611268 TRUE FALSE FALSE 438645.5649 526525.3158 805160.2959 505652.5767 814951.1924 556134.1781 546858.9157 619935.0096 584395.2034 458202.5141 0.95731811 1.149110491 1.757214924 1.103556967 1.778582979 1.213730089 1.193487375 1.352971646 1.275408112 1 18.80562585 LDAS(ph)ILEDR ddPTM_HeLa_A486_30min_R1 1 LDASILEDR 9 0 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 LDAS(1)ILEDR 107.85 0.0010448 18431000 22385 43100 41266 17676 45559 46011 50005 48918 34901 31263 TRUE FALSE FALSE 20815.9271 39684.59903 57245.30034 41150.6213 39844.5654 40334.63063 37493.2201 37780.43927 37926.24678 23434.54131 0.888258354 1.693423332 2.442774517 1.755981512 1.700249425 1.721161515 1.599912693 1.612168925 1.618390831 1 14.51634894 -8.899915192 0.635072962 0.967671563 1.729122417 0.24636628 0.351027424 5.420147751 2.709484556 0.809505276 0.145690313 1.26E-09 8.899915192 0.761450854 LDEDEDEDDADLSKYNLDAS(ph)EEEDSNKK ddPTM_HeLa_A485_30min_R1 1 LDEDEDEDDADLSKYNLDASEEEDSNKK 28 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 LDEDEDEDDADLSKYNLDAS(1)EEEDSNKK 133.25 1.65E-06 745410000 262710 131430 56503 755950 185370 168370 413600 260380 120080 959170 TRUE FALSE FALSE 321148.9332 146799.5952 77405.81099 797245.6343 166913.9119 177185.5929 325230.9812 196521.3967 144178.9546 720066.5712 0.445998948 0.203869477 0.107498132 1.107183233 0.231803445 0.24606835 0.451667935 0.27292115 0.200230035 1 19.45777077 -10.1530833 4.042257932 1.000238277 0.365374524 0.335020771 0.269203761 623384749.2 1131194968 1916621.103 0.066279501 7.03E-11 10.1530833 -0.634863753 LDEDEDEDDADLSKYNLDAS(ph)EEEDSNKK ddPTM_HeLa_A486_30min_R1 1 LDEDEDEDDADLSKYNLDASEEEDSNKK 28 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 LDEDEDEDDADLSKYNLDAS(1)EEEDSNKK 164.84 3.41E-14 831210000 399900 298140 72198 415830 169630 556970 826080 716400 220940 1207800 TRUE FALSE FALSE 371869.0751 274514.3006 100154.9991 968073.2549 148353.4237 488256.7043 619386.0466 553291.3589 240091.2571 905359.0185 0.410742112 0.303210434 0.110624622 1.069270019 0.16386143 0.539296229 0.684133072 0.611129229 0.265189005 1 19.78813048 -14 0.158498397 2.868501193 0.32955189 0.258241362 0.270414538 188.2878293 1.721782463 111.6762074 1.164882538 1.00E-14 14 -2.538949303 LDEDEDEDDADLSKYNLDAS(ph)EEEDSNKKK ddPTM_HeLa_A485_30min_R1 1 LDEDEDEDDADLSKYNLDASEEEDSNKKK 29 3 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 LDEDEDEDDADLSKYNLDAS(1)EEEDSNKKK 172.58 2.26E-14 2052500000 449970 223760 148760 1294400 352300 355250 789270 748010 247040 1740000 TRUE FALSE FALSE 550064.2741 249926.7855 203792.5144 1365109.794 317223.775 373850.3407 620636.0168 564559.3747 296618.662 1306250.022 0.421101829 0.191331507 0.156013406 1.045060112 0.242850733 0.286201213 0.475128043 0.432198557 0.227076484 1 20.31699963 -9.974064654 4.110134909 1.000035265 0.389990272 0.363883674 0.243369677 299867165.6 611783705 158616.7928 0.059570162 1.06E-10 9.974064654 -0.610044993 LDEDEDEDDADLSKYNLDAS(ph)EEEDSNKKK ddPTM_HeLa_A486_30min_R1 4 LDEDEDEDDADLSKYNLDASEEEDSNKKK 29 3 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 LDEDEDEDDADLSKYNLDAS(0.996)EEEDS(0.004)NKKK;LDEDEDEDDADLSKYNLDAS(1)EEEDSNKKK;LDEDEDEDDADLSKYNLDAS(1)EEEDSNKKK;LDEDEDEDDADLSKYNLDAS(1)EEEDSNKKK ;;; 273.72 4.19E-77 4262440000 1018770 714660 165317 1342050 487460 1396220 2513180 2011130 501920 3420160 TRUE FALSE FALSE 947359.4839 658027.7389 229332.1697 3124360.223 426318.2214 1223968.572 1884355.782 1553239.602 545426.8297 2563729.674 0.369523937 0.256668145 0.089452555 1.218677716 0.166288289 0.477417172 0.735005645 0.605851552 0.212747403 1 21.28981272 -14 0.141911289 2.683468125 0.298084472 0.196556918 0.319479048 238.3585379 2.05788778 115.5969272 1.896835212 1.00E-14 14 -2.385383653 LDEGT(ph)PPEPK ddPTM_HeLa_A485_30min_R1 6 LDEGTPPEPK 10 0 Q9Y4G6;H0YN01;H0YMT1;A0A1B0GVU7 Q9Y4G6 TLN2 Talin-2 1 0 LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK ;;;;; 186.58 4.85E-09 6569520000 10975650 7379730 5982780 18275100 10783100 10166630 16014500 12930220 8475520 23759000 TRUE FALSE FALSE 13417145.48 8242725.228 8196059.286 19273422.44 9709496.702 10698939.03 12592871.25 9759063.271 10176479.12 17836318.55 0.752237377 0.462131533 0.459515189 1.080571777 0.544366635 0.599840096 0.706024128 0.547145603 0.570548182 1 24.08831454 -9.979166651 4.289966673 1.00001438 0.63431578 0.285046115 0.173014171 102570809.8 173260098.6 21642.51221 0.042418977 1.05E-10 9.979166651 -0.3656986 LDEGT(ph)PPEPK ddPTM_HeLa_A486_30min_R1 6 LDEGTPPEPK 10 0 Q9Y4G6;H0YN01;H0YMT1;A0A1B0GVU7 Q9Y4G6 TLN2 Talin-2 1 0 LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK;LDEGT(1)PPEPK ;;;;; 168.02 1.70E-06 8281270000 9568070 11724430 5880100 5683140 10401380 15205940 17728230 15925840 9450940 17529680 TRUE FALSE FALSE 8897397.703 10795343.47 8157032.195 13230637.13 9096741.931 13329985.73 13292439.34 12299873.89 10270155.09 13140134.03 0.677116206 0.82155505 0.620772374 1.006887533 0.692286845 1.014448231 1.011590849 0.936053914 0.781586783 1 23.64747666 -5.506556589 1.036628559 0.936678562 0.71169917 0.350032828 0.119602069 0.652611886 1.425805103 0.048197571 0.1010975 3.11E-06 5.506556589 -0.224979392 LDEIYVAGLVAHSDLDER ddPTM_HeLa_A485_30min_R1 1 LDEIYVAGLVAHSDLDER 18 0 O60506-3;O60506;O60506-4;O60506-2;F6UXX1 O60506-3 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 83.37 0.009448 0 12811 13288 13638 13289 16458 12682 12790 13486 9552.3 19990 FALSE FALSE TRUE 15660.76275 14841.91601 18683.26372 14014.94442 14819.38373 13346.00991 10057.31202 10178.53735 11469.35899 15006.86089 1.043573527 0.989008702 1.24498147 0.933902468 0.987507237 0.889327222 0.670180932 0.678258926 0.764274359 1 13.87333461 -6.25453299 1.640724385 0.753672318 1.063223408 0.53279277 0.114953395 0.266389035 1.422541708 0.0485865 0.044430666 5.57E-07 6.25453299 0.30955109 LDFIESDS(ph)PCSSEALSK ddPTM_HeLa_A485_30min_R1 2 LDFIESDSPCSSEALSK 17 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 LDFIES(0.001)DS(0.629)PCS(0.356)S(0.015)EALSK;LDFIESDS(0.993)PCS(0.007)SEALSK ; 248.25 8.20E-43 284020000 407330 296360 269600 654960 458340 309400 427460 292620 364460 843970 TRUE FALSE FALSE 497939.1532 331016.724 369336.259 690738.8064 412706.0603 325599.7056 336129.679 220854.4862 437603.779 633583.8111 0.785908896 0.52245136 0.58293197 1.090209052 0.651383531 0.513901555 0.530521256 0.34857975 0.690680177 1 19.27317595 -8.028062694 24.04163594 1.000000009 0.625260033 0.258711889 0.187871631 2904.828685 2488598.148 0.193110119 0.049860818 9.37E-09 8.028062694 -0.374739976 LDFIESDS(ph)PCSSEALSK ddPTM_HeLa_A486_30min_R1 2 LDFIESDSPCSSEALSK 17 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 LDFIES(0.002)DS(0.957)PCS(0.033)S(0.008)EALSK;LDFIESDS(0.857)PCS(0.125)S(0.018)EALSK ; 152.71 3.64E-08 213415000 151730 180574 103008 97898 168157 213734 234015 230564 161968 230695 TRUE FALSE FALSE 141094.5105 166264.6586 142895.4562 227911.4915 147065.1811 187365.6722 175461.9718 178069.6104 176007.5167 172927.4704 0.815917276 0.961470483 0.826331733 1.317960015 0.850444297 1.083492818 1.014656442 1.029735819 1.017811203 1 17.39980754 LDFIESDS(ph)PCSSEALSKK ddPTM_HeLa_A486_30min_R1 1 LDFIESDSPCSSEALSKK 18 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 LDFIES(0.018)DS(0.982)PCSSEALSKK 145.9 2.78E-08 252590000 140020 143960 70182 90643 152230 164610 228850 237290 114140 254090 TRUE FALSE FALSE 130205.3211 132552.0853 97358.34994 211021.4848 133135.8939 144302.0918 171589.3095 183264.247 124033.7471 190464.2102 0.683620933 0.69594222 0.511163488 1.107932481 0.699007408 0.757633635 0.900900538 0.962197816 0.651218132 1 17.5391604 -2.001043757 0.161100958 0.972905503 8.35E-12 0.207690332 0.1575152 75.16188563 1.041236482 0.489491004 16.37132351 0.009975995 2.001043757 -0.972905503 LDFLPEMMVDHCS(ph)LNS(ph)SPVSK ddPTM_HeLa_A485_30min_R1 1 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 2 0 LDFLPEMMVDHCS(0.983)LNS(0.831)S(0.185)PVS(0.001)K 89.197 0.0011267 7858500 20557 13900 11051 25407 23769 15480 25301 26737 14108 31540 TRUE FALSE FALSE 25129.83373 15525.48409 15139.22477 26794.92008 21402.4749 16290.50886 19895.23466 20179.70883 16939.34619 23677.65845 1.061331034 0.655701835 0.639388595 1.131654134 0.903910112 0.688011819 0.840253469 0.852267925 0.715414754 1 14.5312388 -4.228834507 23.19818066 0.822977948 1.061332205 0.181731859 0.15026517 9864.556433 7018264.424 0.038091347 4.951724919 5.90E-05 4.228834507 0.238354257 LDFLPEMMVDHCS(ph)LNSSPVSK ddPTM_HeLa_A485_30min_R1 2 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCS(0.316)LNS(0.228)S(0.228)PVS(0.228)K;LDFLPEMMVDHCS(0.667)LNS(0.111)S(0.111)PVS(0.111)K ; 159.73 1.86E-11 1034590000 357090 458150 425040 95330 442000 609580 303260 464300 516380 122852 TRUE FALSE FALSE 436523.4386 511726.6571 582279.9834 100537.6365 397992.928 641496.6662 238466.0236 350429.697 620012.7295 92227.25732 4.733128266 5.548540334 6.313534635 1.090107626 4.315350359 6.955608188 2.58563499 3.799632638 6.722662556 1 16.49290557 LDFLPEMMVDHCS(ph)LNSSPVSK ddPTM_HeLa_A486_30min_R1 2 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCS(0.321)LNS(0.226)S(0.226)PVS(0.226)K;LDFLPEMMVDHCS(0.25)LNS(0.25)S(0.25)PVS(0.25)K ; 150.72 8.49E-10 552280000 357280 738270 778840 34834 940220 436030 241250 443930 585700 74456 TRUE FALSE FALSE 332236.517 679766.7965 1080427.706 81095.31241 822288.8404 382237.0518 180886.6983 342856.8299 636468.9476 55811.73297 5.952807757 12.17963966 19.35843323 1.453015488 14.73326121 6.848686315 3.24101562 6.143095935 11.40385567 1 15.76828082 -6.497695581 22.09308253 5.756906981 10.78022841 0.195743591 5.12314702 302.0301082 264970.4145 1.780753459 1.560858414 3.18E-07 6.497695581 5.023321431 LDFLPEMMVDHCS(ph)LNSSPVSKK ddPTM_HeLa_A485_30min_R1 1 LDFLPEMMVDHCSLNSSPVSKK 22 1 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCS(0.25)LNS(0.25)S(0.25)PVS(0.25)KK 102.07 0.00026375 52742000 55883 69531 56932 11597 72451 105940 56735 99983 70939 21660 TRUE FALSE FALSE 68313.98056 77662.04561 77993.51594 12230.51474 65237.52405 111486.8546 44613.10377 75462.01248 85175.80661 16260.56062 4.201206966 4.776098894 4.79648382 0.752158245 4.012009522 6.856273727 2.743638722 4.640800169 5.238183885 1 13.98908938 -10.61284871 2.81550259 0.740352644 4.194941915 0.288422285 1.518616828 15824097.89 14683349.23 30019996.54 0.389774095 2.44E-11 10.61284871 3.454589271 LDFLPEMMVDHCSLNS(ph)SPVSK ddPTM_HeLa_A486_30min_R1 1 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCS(0.006)LNS(0.497)S(0.497)PVSK 211.71 3.51E-27 78798000 78388 95900 73386 1956.9 114680 76815 90301 80226 91885 37410 TRUE FALSE FALSE 72893.406 88300.53474 101803.0245 4555.762096 100295.7651 67338.3463 67706.73469 61960.29112 99849.66578 28042.2925 2.599409659 3.148834381 3.630338873 0.162460401 3.576589362 2.401313883 2.414450769 2.209530163 3.560681274 1 14.77531668 -10.52636509 3.107713713 0.945778989 2.60748071 0.20305979 0.969710522 59398414.21 67217511.57 27006906.6 0.238772769 2.98E-11 10.52636509 1.661701721 LDFLPEMMVDHCSLNS(ph)SPVSKK ddPTM_HeLa_A485_30min_R1 1 LDFLPEMMVDHCSLNSSPVSKK 22 1 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCSLNS(0.625)S(0.375)PVSKK 221.6 5.31E-36 338330000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LDFLPEMMVDHCSLNS(ph)SPVSKK ddPTM_HeLa_A486_30min_R1 1 LDFLPEMMVDHCSLNSSPVSKK 22 1 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCSLNS(0.7)S(0.3)PVSKK 173.59 2.43E-14 365400000 188180 200860 136590 21145 231100 168240 215190 197860 191430 93099 TRUE FALSE FALSE 174989.5538 184943.1221 189481.306 49226.62861 202113.2831 147484.2593 161347.186 152811.5973 208023.3065 69786.40443 2.507502073 2.650131119 2.715160747 0.705389954 2.896169888 2.113366644 2.312014601 2.189704406 2.980857206 1 16.09065838 -10.86936498 2.624767332 0.401829757 2.317436097 0.301606942 0.611288662 24968323.48 15581968.04 93058053.24 0.152851781 1.35E-11 10.86936498 1.915606341 LDFLPEMMVDHCSLNSS(ph)PVSK ddPTM_HeLa_A485_30min_R1 5 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCSLNS(0.025)S(0.974)PVSK;LDFLPEMMVDHCSLNS(0.019)S(0.981)PVSK;LDFLPEMMVDHCS(0.008)LNS(0.036)S(0.956)PVS(0.001)K;LDFLPEMMVDHCSLNS(0.016)S(0.984)PVSK;LDFLPEMMVDHCS(0.023)LNS(0.119)S(0.858)PVSK ;;;; 254.11 7.25E-59 2111688000 762795 966336 899076 341915 1495871 713270 1087635 1012977 861906 768849 TRUE FALSE FALSE 932476.1161 1079340.589 1231681.626 360592.9507 1346936.831 750615.7143 855252.8971 764542.8025 1034882.628 577189.0939 1.615547012 1.869994774 2.133930871 0.624739716 2.333614486 1.300467598 1.481755123 1.324596758 1.792969824 1 19.13868451 -11.57718863 0.118001617 1.50E-09 1.964553552 0.146526867 0.452306343 148.2919618 2.095187954 45.96607538 5.312956413 2.65E-12 11.57718863 1.964553551 LDFLPEMMVDHCSLNSS(ph)PVSK ddPTM_HeLa_A486_30min_R1 4 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCSLNS(0.161)S(0.839)PVSK;LDFLPEMMVDHCSLNS(0.004)S(0.996)PVSK;LDFLPEMMVDHCS(0.001)LNS(0.088)S(0.911)PVSK;LDFLPEMMVDHCS(0.002)LNS(0.263)S(0.734)PVS(0.001)K ;;; 296.74 3.46E-87 2642200000 834696 984774 785193 65748.9 1193225 753334 874791 867994 946172 342404 TRUE FALSE FALSE 776188.1208 906736.9218 1089240.758 153066.762 1043559.594 660395.3104 655909.0392 670370.7144 1028186.951 256663.8097 3.024143223 3.532780577 4.243842398 0.596370646 4.065861857 2.572997382 2.555518208 2.611863025 4.005967775 1 17.96952036 -10.69482047 2.92434984 0.744536336 2.994331451 0.263242364 1.014409036 16700240.9 17811829.1 31798376.2 0.244780348 2.02E-11 10.69482047 2.249795115 LDFLPEMMVDHCSLNSS(ph)PVSKK ddPTM_HeLa_A485_30min_R1 1 LDFLPEMMVDHCSLNSSPVSKK 22 1 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCSLNS(0.033)S(0.966)PVSKK 252.8 4.02E-59 325020000 145210 160580 116390 56837 259500 153130 227500 244490 138680 147220 TRUE FALSE FALSE 177511.4635 179358.4341 159447.5044 59941.86139 233663.2688 161147.65 178892.7665 184528.4442 166511.804 110520.7634 1.606136785 1.622848311 1.442692753 0.542358373 2.114202451 1.458075796 1.618634915 1.669626942 1.506611055 1 16.75395791 LDFLPEMMVDHCSLNSS(ph)PVSKK ddPTM_HeLa_A486_30min_R1 1 LDFLPEMMVDHCSLNSSPVSKK 22 1 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 0 LDFLPEMMVDHCSLNS(0.128)S(0.871)PVSKK 222.4 4.97E-36 251100000 169290 176440 110340 13962 203390 150020 197390 173130 156820 66368 TRUE FALSE FALSE 157423.6452 162458.2518 153066.603 32504.2416 177878.9297 131512.0577 148000.9342 133712.0784 170413.2839 49749.02082 3.164356657 3.265556772 3.076776196 0.65336445 3.575526246 2.643510476 2.974951703 2.687732868 3.425460061 1 15.60238051 -10.55574555 8.453758482 0.999683993 2.802327206 0.330374267 0.780595624 0.004630151 0.000243319 0.751822427 0.182318651 2.78E-11 10.55574555 1.802643213 LDGLVET(ph)PTGYIESLPR ddPTM_HeLa_A485_30min_R1 6 LDGLVETPTGYIESLPR 17 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;P55209-3;F8VUX1;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 0 LDGLVET(0.906)PT(0.093)GYIES(0.001)LPR;LDGLVET(0.988)PT(0.011)GYIES(0.001)LPR;LDGLVET(0.923)PT(0.077)GYIESLPR;LDGLVET(0.804)PT(0.196)GYIESLPR;LDGLVET(0.994)PT(0.006)GYIESLPR;LDGLVET(0.989)PT(0.011)GYIESLPR ;;;;; 228.9 7.20E-34 1748601000 364932 387384 347424 338214 519094 358844 488418 531410 336661 434795 TRUE FALSE FALSE 446109.8644 432685.189 475950.5951 356689.7744 467411.1787 377632.517 384063.5043 401080.8643 404225.7747 326408.6083 1.366722118 1.325593682 1.458143514 1.092770734 1.431981776 1.156931856 1.176634116 1.228769261 1.238404149 1 18.31631958 -10.52115766 0.043129432 9.40E-13 2.086731251 0.485406894 0.10083119 276.7460662 1.918147185 62.01093745 33.70215388 3.01E-11 10.52115766 2.086731251 LDGLVET(ph)PTGYIESLPR ddPTM_HeLa_A486_30min_R1 5 LDGLVETPTGYIESLPR 17 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;P55209-3;F8VUX1;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 0 LDGLVET(0.979)PT(0.021)GYIESLPR;LDGLVET(0.985)PT(0.015)GYIESLPR;LDGLVET(0.986)PT(0.014)GYIESLPR;LDGLVET(0.929)PT(0.071)GYIESLPR;LDGLVET(0.99)PT(0.01)GYIESLPR ;;;; 287.57 1.40E-59 1616274000 521838 665934 538174 253125 711335 573744 713759 716942 498399 558846 TRUE FALSE FALSE 485259.851 613162.9646 746569.3856 589287.7922 622112.7314 502961.2987 535168.9488 553709.9573 541600.6266 418907.3241 1.158394287 1.463719847 1.782182699 1.406725923 1.485084398 1.200650525 1.277535431 1.321795838 1.292888893 1 18.67627158 -6.256666447 24.55575867 1.242371454 1.474497231 0.342718098 0.164314918 399.5268964 2055484.633 0.056189171 0.05444717 5.54E-07 6.256666447 0.232125777 LDGLVETPTGYIES(ph)LPR ddPTM_HeLa_A485_30min_R1 2 LDGLVETPTGYIESLPR 17 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;P55209-3;F8VUX1;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 0 LDGLVETPT(0.001)GYIES(0.999)LPR;LDGLVETPT(0.045)GYIES(0.955)LPR ; 150.28 4.86E-08 236550000 152688 158617 171501 148784 232765 161704 241730 239630 154872 188884 TRUE FALSE FALSE 186652.9188 177165.8784 234946.3567 156911.6932 209590.0993 170170.5714 190082.4107 180860.3668 185953.3898 141798.695 1.316323249 1.249418258 1.656900698 1.106580658 1.478082005 1.200085596 1.340508887 1.275472717 1.311389995 1 17.11348473 -12.89185476 0.231273913 2.04E-14 1.367885407 0.33126511 0.141936955 103.1455534 1.642780651 48.53672731 0.23394712 1.28E-13 12.89185476 1.367885407 LDGLVETPTGYIES(ph)LPR ddPTM_HeLa_A486_30min_R1 4 LDGLVETPTGYIESLPR 17 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;P55209-3;F8VUX1;F8VXI6;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 0 LDGLVETPT(0.013)GYIES(0.987)LPR;LDGLVETPT(0.008)GYIES(0.992)LPR;LDGLVETPTGYIES(1)LPR;LDGLVETPTGYIES(1)LPR ;;; 186.85 9.21E-18 401911000 320007 400267 356129 173111 475720 391955 484785 474282 370856 409633 TRUE FALSE FALSE 297576.1618 368548.3852 494031.6863 403011.1565 416050.7617 343599.5772 363486.6655 366298.3421 403002.0967 307058.2305 0.96911964 1.20025568 1.608918561 1.312490976 1.354957205 1.119004616 1.18377112 1.192927939 1.31246147 1 18.22815275 -6.260250472 24.99696419 1.175074655 1.303271745 0.12489407 0.164775846 256.7374477 5397982.459 0.058555809 0.055494737 5.49E-07 6.260250472 0.12819709 LDGSLETTNEILDS(ph)ASHDCPLVTQTYGAAAGK ddPTM_HeLa_A486_30min_R1 1 LDGSLETTNEILDSASHDCPLVTQTYGAAAGK 32 0 Q9Y4P8-4;Q9Y4P8;Q9Y4P8-3;Q9Y4P8-2;Q9Y4P8-5;Q9Y4P8-6 Q9Y4P8-4 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 1 0 LDGS(0.001)LET(0.008)T(0.008)NEILDS(0.968)AS(0.016)HDCPLVTQTYGAAAGK 117.17 3.10E-05 32693000 20602 23706 13697 16640 22090 20875 29356 33357 15847 31263 TRUE FALSE FALSE 19157.90619 21827.45022 19000.84522 38738.76094 19319.26622 18299.65474 22010.8183 25762.33928 17220.63072 23434.54131 0.817507197 0.931422123 0.810805083 1.653062478 0.824392761 0.780883846 0.939246816 1.099331919 0.734839675 1 14.51634894 LDHDLS(ph)LDR ddPTM_HeLa_A485_30min_R1 1 LDHDLSLDR 9 0 Q8TDJ6-2;Q8TDJ6;Q8TDJ6-3 Q8TDJ6-2 DMXL2 DmX-like protein 2 1 0 LDHDLS(1)LDR 120.57 0.00031779 108690000 30903 31274 35219 22141 38388 30373 27374 31168 36062 28623 TRUE FALSE FALSE 37777.26574 34931.22225 48247.97368 23350.50677 34565.95593 31963.28331 21525.32127 23523.99913 43299.31262 21487.81287 1.758078683 1.625629489 2.245364569 1.086686063 1.608630722 1.487507524 1.001745567 1.094760052 2.015063743 1 14.39123103 -5.271455143 24.97230929 1.336492706 1.851284785 0.36018277 0.334417556 763.3516836 1903264.01 0.092797062 0.139463112 5.35E-06 5.271455143 0.51479208 LDHDLS(ph)LDR ddPTM_HeLa_A486_30min_R1 1 LDHDLSLDR 9 0 Q8TDJ6-2;Q8TDJ6;Q8TDJ6-3 Q8TDJ6-2 DMXL2 DmX-like protein 2 1 0 LDHDLS(1)LDR 84.479 0.0051972 75278000 151250 149170 97860 39447 109580 121820 112900 118280 129650 155420 TRUE FALSE FALSE 140648.1561 137349.2259 135754.0128 91834.60954 95835.45461 106791.087 84651.22587 91350.22603 140888.1664 116501.8204 1.207261445 1.178944891 1.165252288 0.788267593 0.822609074 0.916647368 0.726608611 0.78410986 1.209321588 1 16.82999297 -5.247556862 22.05541392 0.874694483 1.183332332 0.507665049 0.1306419 128.6939601 204455.5583 0.035260349 0.060503989 5.66E-06 5.247556862 0.308637849 LDHGEES(ph)NES(ph)AESSSNWEK ddPTM_HeLa_A486_30min_R1 2 LDHGEESNESAESSSNWEK 19 0 Q9H4L7-2;Q9H4L7 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 LDHGEES(0.999)NES(0.997)AES(0.003)S(0.001)S(0.001)NWEK;LDHGEES(1)NES(0.997)AES(0.002)S(0.001)SNWEK ; 130.78 3.51E-06 255200000 268170 317300 172293 148286 280780 331890 388420 363100 266510 398380 TRUE FALSE FALSE 249372.6678 292155.9924 239009.4638 345217.302 245561.9542 290944.7862 291233.2077 280430.0564 289611.3014 298623.055 0.835075068 0.978343726 0.800371772 1.156030307 0.822314119 0.974287756 0.975253594 0.939077046 0.969822311 1 18.18796603 -2.932413285 0.821866923 0.961509104 1.55E-08 0.133070653 0.092711306 39.86739051 3.730429011 0.030611084 56.94311839 0.001168387 2.932413285 -0.961509088 LDHK(ac)FDLMYAK ddPTM_HeLa_A486_30min_R1 1 LDHKFDLMYAK 11 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;A6NHL2;A6NHL2-2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 1 LDHK(1)FDLMYAK 92.856 0.0081004 25722000 25474 30123 52414 16063 36628 38234 55321 46257 29909 78274 FALSE TRUE FALSE 23688.40415 27735.94377 72710.1045 37395.47578 32033.7747 33517.07781 41479.10067 35725.29088 32501.5362 58673.68092 0.403731346 0.47271525 1.239228618 0.637346681 0.545964974 0.571245528 0.706945602 0.608881023 0.553937229 1 15.84042588 -11.0116896 2.863115788 1.381156141 0.647126954 0.1997051 0.216808206 138522401 121189674.6 346841661.8 0.057067138 9.73E-12 11.0116896 -0.734029188 LDHKFDLMYAK ddPTM_HeLa_A485_30min_R1 4 LDHKFDLMYAK 11 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;A6NHL2;A6NHL2-2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 154.28 1.40E-06 1512704000 2880133 2711038 2135782 3470686 3968004 3334961 4730402 4481600 2730403 4514463 FALSE FALSE TRUE 3520808.65 3028070.311 2925896.639 3660280.788 3572935.589 3509574.401 3719712.969 3382480.573 3278369.837 3389090.457 1.038865352 0.893475801 0.863327986 1.080018617 1.054246157 1.035550525 1.097554939 0.998049659 0.967330285 1 21.69246671 -5.268406436 24.99594114 1.036818826 0.928048321 0.407220955 0.055867836 499.7818532 1793084.453 0.016027456 0.024353973 5.39E-06 5.268406436 -0.108770505 LDHKFDLMYAK ddPTM_HeLa_A486_30min_R1 5 LDHKFDLMYAK 11 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;A6NHL2;A6NHL2-2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;;; ;;;; 171.05 1.08E-07 1322344000 4922340 5000360 2894211 2213264 6279770 5839930 6825250 6448380 4197660 6353050 FALSE FALSE TRUE 4577309.385 4604113.263 4014927.009 5152590.444 5492102.69 5119458.813 5117500.26 4980224.641 4561516.549 4762204.929 0.961174383 0.966802843 0.843081528 1.081975791 1.153268869 1.075018587 1.074607317 1.045781254 0.957858097 1 22.18319827 -5.280018476 24.98679893 1.063091914 0.927997907 0.514963943 0.058253788 632.6490436 850840.578 0.017131008 0.025462477 5.25E-06 5.280018476 -0.135094007 LDHKFDLMYAK(ac)R ddPTM_HeLa_A485_30min_R1 1 LDHKFDLMYAKR 12 2 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;A6NHL2;A6NHL2-2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 1 LDHKFDLMYAK(1)R 115.8 0.0014019 6961200 10566 10818 12526 11987 15751 10625 15116 15078 10605 19981 FALSE TRUE FALSE 12916.37025 12083.071 17159.88865 12641.81946 14182.77513 11181.30857 11886.34311 11380.09686 12733.32623 15000.10442 0.861085355 0.805532459 1.143984613 0.842782097 0.94551176 0.745415382 0.792417358 0.758667842 0.848882505 1 13.87268492 -6.247093518 24.62105371 0.811702152 0.92161045 0.139159102 0.108531 1097.670106 1883874.612 0.035134638 0.034967229 5.66E-07 6.247093518 0.109908298 LDHKFDLMYAK(ac)R ddPTM_HeLa_A486_30min_R1 1 LDHKFDLMYAKR 12 2 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;Q9NY65;C9J2C0;Q9NY65-2;A6NHL2;A6NHL2-2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 1 LDHKFDLMYAK(1)R 123.84 0.00079431 4835100 9070 11346 9815.9 4286.7 15003 12219 13619 13223 7862.4 12554 FALSE TRUE FALSE 8434.239838 10446.90164 13616.87936 9979.654238 13121.18384 10711.54401 10211.38215 10212.41156 8543.919162 9410.396687 0.896268257 1.110144661 1.447003757 1.060492407 1.394328452 1.138267001 1.085117078 1.085226468 0.907923379 1 13.20003982 -7.247673296 1.52245369 0.965769265 1.186975818 0.22567046 0.151764905 0.62844456 2.625817529 0.122108877 0.047591512 5.65E-08 7.247673296 0.221206554 LDHLAEK ddPTM_HeLa_A485_30min_R1 4 LDHLAEK 7 0 O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ;;; ;;; 122.13 0.0064995 431374000 1535935 1523110 1240722 1850960 2020390 1799130 2319240 2403880 1581990 2559750 FALSE FALSE TRUE 1877598.442 1701224.465 1699716.699 1952073.258 1819232.878 1893329.665 1823715.428 1814324.661 1899480.882 1921651.434 0.977075451 0.885292949 0.884508329 1.015831083 0.946702844 0.985261755 0.949035499 0.944148678 0.988462761 1 20.87391524 -5.251505251 24.97197784 0.971394861 0.912592314 0.406425025 0.032894483 684.1325701 1719738.055 0.008739818 0.014921549 5.60E-06 5.251505251 -0.058802546 LDHLAEK ddPTM_HeLa_A486_30min_R1 1 LDHLAEK 7 0 O43707;O43707-2;P12814-2;P12814;P12814-3;P12814-4;H9KV75 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 86.794 0.026234 236750000 730520 769340 478820 361250 1033500 834300 1046300 942590 637920 913230 FALSE FALSE TRUE 679314.3204 708374.6965 664231.9272 841008.2566 903868.793 731372.5485 784504.6734 727982.8336 693215.4192 684551.2639 0.992349816 1.034801532 0.97031729 1.228554092 1.320381454 1.068397047 1.146013038 1.063445314 1.012656693 1 19.38479906 -5.241234322 24.86026861 1.129857496 1.002720734 0.255157638 0.093421137 1091.428694 1342889.764 0.026966756 0.046629329 5.74E-06 5.241234322 -0.127136762 LDHLLCWLLEHR ddPTM_HeLa_A485_30min_R1 1 LDHLLCWLLEHR 12 0 F8WC68;O77932 F8WC68 DXO Decapping and exoribonuclease protein 0 0 81.92 0.0091247 2700400 1767.3 1667.7 2161 3186 3563.7 1926.4 3160.5 2239.3 2236.6 3721.3 FALSE FALSE TRUE 2160.429788 1862.723008 2960.443827 3360.043113 3208.885515 2027.263325 2485.233356 1690.108164 2685.465105 2793.648395 0.773336327 0.66677074 1.059705234 1.202743738 1.148636142 0.725668745 0.88960134 0.604982419 0.961275266 1 11.44793474 -6.283758423 24.82801591 0.81494795 0.971266493 0.111820319 0.183859333 1638.492563 1822675.619 0.070382272 0.062119947 5.20E-07 6.283758423 0.156318543 LDHVNIVHYNGCWDGFDYDPET(ph)SDDSLESSDYDPENSK ddPTM_HeLa_A486_30min_R1 2 LDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSK 38 0 P19525;P19525-2 P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 LDHVNIVHY(0.001)NGCWDGFDY(0.016)DPET(0.32)S(0.32)DDS(0.32)LES(0.02)S(0.005)DYDPENSK;LDHVNIVHYNGCWDGFDY(0.003)DPET(0.315)S(0.315)DDS(0.315)LES(0.022)S(0.025)DY(0.005)DPENSK ; 78.366 0.0011838 150569000 44361 60055 39169 33942 68390 89120 91653 78962 50899 72918 TRUE FALSE FALSE 41251.52298 55296.02308 54336.28578 79018.69133 59811.88849 78125.28051 68720.44999 60984.07633 55310.9663 54658.85818 0.754708831 1.011657121 0.994098442 1.445670363 1.094276216 1.429325147 1.257260987 1.115721739 1.011930511 1 15.7381677 -4.556402301 1.56942914 1.202830768 0.731724267 0.415853994 0.15431205 0.580404655 2.055904783 0.044422054 0.356455938 2.78E-05 4.556402301 -0.471106502 LDHVNIVHYNGCWDGFDYDPETSDDS(ph)LESSDYDPENSK ddPTM_HeLa_A485_30min_R1 1 LDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSK 38 0 P19525;P19525-2 P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 LDHVNIVHYNGCWDGFDY(0.003)DPET(0.302)S(0.302)DDS(0.392)LES(0.001)SDYDPENSK 114.03 1.77E-05 108030000 24561 25329 22340 38534 38987 29001 39751 40845 28334 62459 TRUE FALSE FALSE 30024.50972 28291.00622 30604.49564 40639.01485 35105.31739 30519.44752 31257.87411 30827.69971 34020.37391 46889.12077 0.640329979 0.603359708 0.652699286 0.866704561 0.748687901 0.650885472 0.666633829 0.657459539 0.72554941 1 15.51696561 -8.134779783 6.44288425 0.999999536 0.688427467 0.641127921 0.070061416 2.421255226 115.6587738 0.074728513 0.019371557 7.33E-09 8.134779783 -0.311572068 LDIDS(ph)PPITAR ddPTM_HeLa_A485_30min_R1 10 LDIDSPPITAR 11 0 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR ;;;;;;;;; 218.4 8.63E-18 19740773000 7507682 9234710 8798651 8328167 10956064 9125413 11527347 11782398 8230050 10919292 TRUE FALSE FALSE 9177739.96 10314629 12053638.15 8783113.675 9865239.799 9603205.514 9064435.144 8892746.416 9881745.545 8197313.459 1.119603393 1.258293837 1.470437627 1.071462464 1.203472314 1.171506441 1.105781204 1.084836692 1.20548587 1 22.96671974 -5.308641308 24.99999876 1.128884638 1.280330595 0.358715815 0.099040319 451.1612375 238951.8229 0.027739275 0.04114408 4.91E-06 5.308641308 0.151445957 LDIDS(ph)PPITAR ddPTM_HeLa_A486_30min_R1 9 LDIDSPPITAR 11 0 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(0.999)PPIT(0.001)AR;LDIDS(1)PPITAR;LDIDS(0.999)PPIT(0.001)AR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR ;;;;;;;; 229.56 2.44E-18 17352440000 7882380 9497670 7479300 3056571 10335720 8344790 9468940 9589560 7486180 8817480 TRUE FALSE FALSE 7329865.867 8745040.039 10375485.26 7115851.759 9039317.621 7315294.653 7099711.06 7406226.527 8135088.11 6609525.616 1.108985167 1.323096474 1.569777601 1.076605519 1.367619727 1.106780589 1.074163483 1.120538289 1.230812706 1 22.6561153 -6.275558571 23.84758115 1.111974158 1.294874056 0.302246053 0.138581029 572.2520486 966540.6447 0.048533501 0.043028911 5.30E-07 6.275558571 0.182899898 LDIDSPPITAR ddPTM_HeLa_A485_30min_R1 4 LDIDSPPITAR 11 0 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 282.72 1.41E-46 388501000 522055 625059 665659 575871 827330 628157 787450 833730 578715 801905 FALSE FALSE TRUE 638184.3337 698154.2128 911913.9645 607329.3745 744958.1203 661046.3292 619204.8746 629256.4103 694857.7922 602004.8415 1.060098341 1.159715279 1.514795068 1.008844668 1.237462009 1.098074772 1.028571254 1.045268023 1.154239542 1 19.19941556 -6.40674851 4.332918944 1.060841486 1.201164139 0.202877937 0.131226552 0.395007556 12.2019613 0.048262603 0.041848134 3.92E-07 6.40674851 0.140322653 LDIDSPPITAR ddPTM_HeLa_A486_30min_R1 2 LDIDSPPITAR 11 0 P14618;P14618-2;H3BTN5;B4DNK4;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 225.87 1.96E-16 239520000 184014 217467 186059 94559 423640 191195 216130 239310 170037 218158 FALSE FALSE TRUE 171115.5688 200234.1229 258106.0276 220138.1307 370503.1209 167607.3048 162051.988 184824.3371 184775.9441 163529.8168 1.046387577 1.224450237 1.578342303 1.346165091 2.265660955 1.024934217 0.99096294 1.130217967 1.129922039 1 17.31919418 LDINLLDNVVNCLYHGEGAQQR ddPTM_HeLa_A486_30min_R1 2 LDINLLDNVVNCLYHGEGAQQR 22 0 O14980;C9JKM9;C9J673;C9JF49;C9IYM2;F8WF71;C9IZS4;C9JQ02;C9JV99 O14980 XPO1 Exportin-1 0 0 ; ; 277.75 1.61E-64 16671600 10785.4 13668.3 10547.5 4222.74 14934.7 10779.1 13278.2 14083.7 12240.7 11854.3 FALSE FALSE TRUE 10029.39916 12585.17413 14631.77447 9830.752125 13061.45067 9449.284236 9955.853918 10877.14896 13301.73373 8885.906121 1.128686148 1.416307347 1.646627172 1.106330856 1.469906444 1.063401313 1.120409532 1.224090015 1.496947362 1 13.11730318 -6.257812725 24.95251357 1.191190266 1.359602178 0.167109944 0.191754504 622.4635891 4282754.967 0.064693777 0.062237005 5.52E-07 6.257812725 0.168411912 LDIPT(ph)GTTPQRK ddPTM_HeLa_A485_30min_R1 2 LDIPTGTTPQRK 12 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPT(0.378)GT(0.311)T(0.311)PQRK;LDIPT(0.445)GT(0.278)T(0.278)PQRK ; 93.959 0.0022899 185443000 610080 553620 418730 664360 642500 547120 683610 609480 503850 820230 TRUE FALSE FALSE 745790.1912 618361.0431 573635.6518 700652.3046 578530.444 575766.3572 537551.1389 460004.0744 604968.0734 615761.7562 1.211166793 1.004221254 0.931587008 1.137862651 0.939536173 0.935047283 0.872985588 0.747048789 0.982471008 1 19.23201274 -5.936101657 5.44965927 0.894129289 1.056247103 0.391510797 0.09583178 0.213514318 12.32815182 0.030336933 0.034379974 1.16E-06 5.936101657 0.162117814 LDIPT(ph)GTTPQRK ddPTM_HeLa_A486_30min_R1 1 LDIPTGTTPQRK 12 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPT(0.647)GT(0.207)T(0.146)PQRK 79.633 0.0084479 117230000 296300 328660 181560 116960 277950 338360 323120 353990 263090 344330 TRUE FALSE FALSE 275530.9001 302615.7846 251864.8943 272288.7908 243086.9192 296616.5834 242271.9584 273394.2045 285894.853 258107.5268 1.067504321 1.172440759 0.97581383 1.054943241 0.941804845 1.149197728 0.938647398 1.059226005 1.107657946 1 17.97761269 -4.760975909 24.99998534 1.029489008 1.119972534 0.221285853 0.068680385 16.84528135 908373.8066 0.01673741 0.039118549 1.73E-05 4.760975909 0.090483526 LDIPTGTT(ph)PQR ddPTM_HeLa_A485_30min_R1 2 LDIPTGTTPQR 11 0 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPT(0.316)GT(0.156)T(0.527)PQR;LDIPT(0.024)GT(0.159)T(0.817)PQR ; 100.38 0.00158 55985000 374680 343290 342810 458240 379730 276590 350320 287740 365720 583930 TRUE FALSE FALSE 458026.2734 383434.7793 469629.6845 483272.4909 341922.7479 291071.8247 275471.2701 217171.3138 439116.6494 438366.9974 1.044846615 0.874688974 1.071316242 1.102438125 0.779991993 0.663991191 0.628403305 0.495409817 1.001710101 1 18.74177966 -5.875225927 5.367876126 0.719002684 1.014963185 0.382429424 0.158829765 0.197184181 8.507942779 0.048817606 0.055823349 1.33E-06 5.875225927 0.2959605 LDIPTGTT(ph)PQR ddPTM_HeLa_A486_30min_R1 4 LDIPTGTTPQR 11 0 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPT(0.018)GT(0.164)T(0.818)PQR;LDIPTGT(0.015)T(0.985)PQR;LDIPT(0.024)GT(0.124)T(0.852)PQR;LDIPT(0.041)GT(0.021)T(0.938)PQR ;;; 158.42 8.10E-07 618760000 1306940 1714620 1153120 415074 1324890 1563230 1427390 1373980 1445120 1362020 TRUE FALSE FALSE 1215330.255 1578747.267 1599638.946 966313.2487 1158709.942 1370374.576 1070241.925 1061154.748 1570384.165 1020961.327 1.190378346 1.546334053 1.566796806 0.9464739 1.134920503 1.342239457 1.048268819 1.039368211 1.538142654 1 19.96149679 -5.250706154 24.99663159 1.154709897 1.445686168 0.317475427 0.190916304 849.8063742 1979112.161 0.051069409 0.087332795 5.61E-06 5.250706154 0.29097627 LDIPTGTT(ph)PQRK ddPTM_HeLa_A485_30min_R1 2 LDIPTGTTPQRK 12 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPTGT(0.003)T(0.997)PQRK;LDIPTGT(0.004)T(0.996)PQRK ; 175.27 4.94E-11 1639420000 1410990 1245140 933560 1677000 1563920 1244610 1523110 1324290 1274150 2175300 TRUE FALSE FALSE 1724859.858 1390748.292 1278922.693 1768610.264 1408210.634 1309775.855 1197685.106 999505.8011 1529860.218 1633037.743 1.056227797 0.851632669 0.783155624 1.083018608 0.862325834 0.802048734 0.733409323 0.612053093 0.936818652 1 20.6391267 -6.095836579 4.091214516 0.78839242 0.929922572 0.151168024 0.130010354 0.383564677 11.37142994 0.043344282 0.044061487 8.02E-07 6.095836579 0.141530152 LDIPTGTT(ph)PQRK ddPTM_HeLa_A486_30min_R1 3 LDIPTGTTPQRK 12 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPTGT(0.003)T(0.997)PQRK;LDIPT(0.002)GT(0.014)T(0.984)PQRK;LDIPT(0.049)GT(0.25)T(0.701)PQRK ;; 152.07 9.02E-08 1486010000 1665250 1828140 1015180 602370 1476180 1734550 1884080 1857870 1309890 1917470 TRUE FALSE FALSE 1548524.574 1683271.528 1408284.883 1402347.802 1291023.74 1520558.857 1412663.256 1434873.558 1423432.32 1437323.031 1.07736712 1.171115672 0.979797062 0.97566641 0.898214049 1.057910312 0.982843262 0.998295809 0.990335707 1 20.45495291 -4.772287853 24.99974658 0.984361326 1.124241394 0.63408494 0.042188129 109.9805928 253446.1663 0.010863436 0.022977242 1.69E-05 4.772287853 0.139880068 LDKENALDR ddPTM_HeLa_A485_30min_R1 1 LDKENALDR 9 1 J3KN67;A0A2R2Y2Q3;P06753;A0A494C0P6;H0YKP3;H0YLS7;D6RGJ6;A0A087WTJ7;P09493-3;P09493-8;P09493-9;Q6ZN40;P09493-7;A0A0S2Z4G6;P09493-10;P09493-4;P09493-6;P09493 J3KN67;P09493-3 TPM3;TPM1 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain 0 0 98.898 0.0063274 26633000 86716 74728 75410 73031 122450 82959 120940 103030 83581 121230 FALSE FALSE TRUE 106005.675 83466.78955 103307.2971 77020.49861 110258.4481 87302.60496 95100.18101 77761.73096 100354.94 91009.59207 1.164774752 0.917120796 1.135125372 0.8462899 1.211503596 0.959268171 1.044946789 0.854434452 1.102685308 1 16.47373099 LDKSIGAAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 LDKSIGAASPR 11 1 Q96L73-2;Q96L73-3;Q96L73 Q96L73-2 NSD1 "Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific" 1 0 LDKS(0.281)IGAAS(0.719)PR 50.563 0.023626 51008000 73782 200090 208140 28838 178490 146110 95479 148450 165680 35452 TRUE FALSE FALSE 90194.55136 223488.7849 285139.6474 30413.34692 160718.9089 153760.0937 75079.13166 112042.4047 198930.4563 26614.46885 3.388929228 8.397266398 10.71370799 1.142737324 6.038779501 5.777312129 2.820989293 4.209830577 7.474522879 1 14.69992315 -5.261070639 24.99999998 4.301642846 7.589697543 0.268294463 2.576834889 46.66430854 3163665.746 0.702492485 1.12686969 5.48E-06 5.261070639 3.288054697 LDKSQIHDIVLVGGSTR ddPTM_HeLa_A485_30min_R1 2 LDKSQIHDIVLVGGSTR 17 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 115.15 7.99E-05 22771000 33480 67584 49974 25138.7 78141 77965 92137 155460 48388 42281 FALSE FALSE TRUE 40927.5105 75487.3609 68461.46219 26511.96353 70361.00767 82047.12684 72451.17726 117333.1912 58099.02776 31741.12482 1.289415883 2.378219465 2.156869442 0.835255955 2.216714375 2.584884036 2.282564895 3.696566895 1.830402296 1 14.95406563 -5.986301684 24.81848643 2.442443731 1.722896269 0.114158525 0.752828387 385.6301764 698676.9605 0.226673653 0.256900702 1.03E-06 5.986301684 -0.719547462 LDLAGR ddPTM_HeLa_A485_30min_R1 2 LDLAGR 6 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;P0CG38;A0A2R8YEA7;P0CG39;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEI;POTEJ;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ; ; 159.65 0.0097198 778040000 1387140 1506700 1670250 1567010 2131300 1512750 1951110 1796380 1587740 2235900 FALSE FALSE TRUE 1695704.507 1682895.458 2288144.98 1652611.788 1919100.289 1591955.251 1534239.409 1355814.988 1906384.854 1678531.279 1.010231104 1.002599999 1.363182807 0.984558232 1.143321136 0.948421558 0.91403683 0.807738888 1.135745803 1 20.67876799 -6.27161917 23.3916054 0.946225282 1.103445601 0.227951229 0.126915568 411.7456796 946124.5493 0.043922628 0.039228742 5.35E-07 6.27161917 0.157220319 LDLAGR ddPTM_HeLa_A486_30min_R1 2 LDLAGR 6 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;P0CG38;A0A2R8YEA7;P0CG39;Q9BYX7;P63261;I3L3I0;I3L1U9;I3L4N8;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEI;POTEJ;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ; ; 159.65 0.0097198 257150000 560470 731730 677710 228710 857920 729510 786820 765190 706010 704310 FALSE FALSE TRUE 521183.9473 673745.0499 940137.4617 532448.4384 750311.6738 639510.4733 589949.3139 590972.941 767207.5153 527946.1917 0.987191414 1.276162345 1.78074485 1.008527851 1.42118967 1.211317523 1.117442124 1.119381009 1.453192631 1 19.01003137 -6.501691055 22.58524883 1.179870542 1.305969569 0.057383092 0.233298406 716.4166429 763674.731 0.082440756 0.071802114 3.15E-07 6.501691055 0.126099027 LDLAGTLPGS(ph)KR ddPTM_HeLa_A485_30min_R1 2 LDLAGTLPGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLAGT(0.002)LPGS(0.998)KR;LDLAGTLPGS(1)KR ; 122.93 0.0002445 0 207118 190166 131826.1 253745 263564 208748 264843 265331 166366 370798 TRUE FALSE FALSE 253190.6846 212404.2595 180594.0601 267606.4468 237322.6427 219677.7225 208257.1295 200258.1562 199754.1302 278364.8826 0.90956403 0.763042584 0.648767396 0.961351318 0.852559563 0.789171825 0.748144405 0.719408836 0.717598169 1 18.08661769 -8.885723185 12.53952705 1 0.788566774 0.330940785 0.089576202 0 0 0.089836751 0.021788613 1.30E-09 8.885723185 -0.211433226 LDLAGTLPGS(ph)KR ddPTM_HeLa_A486_30min_R1 2 LDLAGTLPGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLAGT(0.001)LPGS(0.999)KR;LDLAGTLPGS(1)KR ; 128.06 2.06E-05 546810000 668410 610170 376250 279850 578100 659380 757350 691430 479390 776080 TRUE FALSE FALSE 621557.9107 561817.907 521944.0763 651504.9428 505589.3074 578032.3997 567853.0196 534006.4828 520943.9112 581744.5166 1.068437936 0.965746803 0.897204978 1.119915915 0.86909166 0.993618991 0.976120966 0.917939865 0.895485727 1 19.15002618 -4.267245805 5.543434147 0.958441234 1.072003512 0.186725937 0.06833679 0.229113312 27.94392822 0.016366106 0.098487876 5.40E-05 4.267245805 0.113562277 LDLKS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LDLKSPK 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LDLKS(1)PK 65.347 0.013189 555840000 1166000 685960 298140 2065500 1102900 1020700 1724400 1629100 675270 2870300 TRUE FALSE FALSE 1425372.677 766177.0549 408434.3926 2178333.035 993091.4035 1074142.274 1355967.853 1229560.671 810790.4951 2154787.034 0.661491208 0.355569735 0.189547452 1.010927298 0.460876823 0.498491153 0.62928161 0.570618187 0.376274074 1 21.03911386 -10.2358821 4.339909648 1.00021797 0.528663085 0.314999163 0.208757001 283635841.1 258.2630871 645026.3679 0.050072756 5.81E-11 10.2358821 -0.471554885 LDLLGNLPGS(ph)K ddPTM_HeLa_A485_30min_R1 2 LDLLGNLPGSK 11 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLLGNLPGS(1)K;LDLLGNLPGS(1)K ; 129.01 4.80E-05 90642000 622070 484420 325170 972370 688970 409350 690530 589750 425290 1323510 TRUE FALSE FALSE 760447.3254 541068.7051 445463.9145 1025488.111 620373.7277 430782.933 542992.6244 445112.8878 510641.802 993583.3144 0.76535839 0.544562995 0.448340776 1.032110842 0.624380179 0.433564983 0.546499339 0.447987483 0.513939591 1 19.92228142 -10.02786429 4.714597846 1.000010176 0.592578833 0.328269088 0.173684236 121320118.1 0.042490066 14009.10464 0.043724014 9.38E-11 10.02786429 -0.407431343 LDLLGNLPGS(ph)K ddPTM_HeLa_A486_30min_R1 2 LDLLGNLPGSK 11 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLLGNLPGS(1)K;LDLLGNLPGS(1)K ; 150.12 5.99E-05 116510000 626120 575440 307211 355009 398508 620250 791150 625570 482628 964070 TRUE FALSE FALSE 582232.2213 529840.0387 426171.3266 826478.8932 348523.4107 543729.8612 593195.9021 483141.3671 524462.5836 722660.597 0.80567866 0.733179643 0.589725424 1.143661211 0.482278143 0.752400039 0.820849932 0.668559168 0.725738453 1 19.46295871 -9.843548034 6.271607724 1.000000014 0.745790165 0.177077573 0.163672286 3.08E-08 5.70E-09 0.150053045 0.036393207 1.43E-10 9.843548034 -0.25420985 LDLLGNLPGS(ph)KR ddPTM_HeLa_A485_30min_R1 2 LDLLGNLPGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLLGNLPGS(1)KR;LDLLGNLPGS(1)KR ; 130.29 1.72E-05 622770000 468610 317645 254363 645134 496111 317118 465271 380767 344693 874369 TRUE FALSE FALSE 572850.6778 354790.8196 348462.4586 680376.0369 446716.4469 333721.8081 365862.0499 287383.2962 413869.7234 656404.8999 0.872709326 0.54050605 0.530865109 1.036518827 0.680550141 0.508408466 0.557372515 0.437814063 0.630509802 1 19.32422648 -10.16751034 5.266111274 1.00001497 0.637582296 0.274818793 0.173254299 3.18E-05 5.02E-06 0.174975954 0.042436151 6.80E-11 10.16751034 -0.362432674 LDLLGNLPGS(ph)KR ddPTM_HeLa_A486_30min_R1 2 LDLLGNLPGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLLGNLPGS(1)KR;LDLLGNLPGS(1)KR ; 107.7 0.00029296 765430000 908740 930980 544080 426270 717110 963840 1140610 938570 727750 1149750 TRUE FALSE FALSE 845042.0187 857205.7542 754762.347 992378.1025 627163.377 844931.2204 855217.3139 724878.0998 790831.956 861845.1164 0.980503344 0.994616942 0.875751725 1.151457592 0.727698475 0.980374785 0.992309752 0.841076994 0.917603338 1 19.7170691 -5.752015771 24.99982208 0.909547564 0.99123974 0.166737016 0.098490562 407.2207509 1080307.728 0.028270541 0.036013407 1.77E-06 5.752015771 0.081692176 LDLPNRPET(ph)SFLWFTNPCK ddPTM_HeLa_A485_30min_R1 1 LDLPNRPETSFLWFTNPCK 19 1 Q9NZM1-5;Q9NZM1-2;Q9NZM1-6;Q9NZM1-3;Q9NZM1 Q9NZM1-5 MYOF Myoferlin 1 0 LDLPNRPET(0.5)S(0.5)FLWFTNPCK 92.01 0.0006448 39646000 39749 35863 26711 42084 34716 33811 46218 46958 29794 73598 TRUE FALSE FALSE 48591.02792 40056.86588 36592.51044 44382.94236 31259.55314 35581.29168 36343.14673 35441.47687 35773.38251 55251.37307 0.879453762 0.72499313 0.662291422 0.803291211 0.565769707 0.643989275 0.657778164 0.641458753 0.647465946 1 15.7537227 -10.02523539 4.06362813 1.000033272 0.687618993 0.536836013 0.085792344 58820780.82 109471481.8 27177.75463 0.021857297 9.44E-11 10.02523539 -0.312414279 LDLPNRPET(ph)SFLWFTNPCK ddPTM_HeLa_A486_30min_R1 1 LDLPNRPETSFLWFTNPCK 19 1 Q9NZM1-5;Q9NZM1-2;Q9NZM1-6;Q9NZM1-3;Q9NZM1 Q9NZM1-5 MYOF Myoferlin 1 0 LDLPNRPET(0.496)S(0.496)FLWFT(0.008)NPCK 63.145 0.0032601 0 26227 25748 19247 15168 27610 26469 27750 27667 22982 31816 TRUE FALSE FALSE 24388.62274 23707.63471 26699.95385 35311.87055 24146.89635 23203.5239 20806.65649 21367.82807 24974.09826 23849.06651 1.022623788 0.994069713 1.119538739 1.480639526 1.012488113 0.972932164 0.872430645 0.895960773 1.047172989 1 14.54164518 -5.985550059 24.99824579 0.951072235 1.153584453 0.33469822 0.131167332 290.6933287 502893.375 0.043656782 0.049482552 1.03E-06 5.985550059 0.202512218 LDLQQGQNLLQGLSKLS(ph)PSTSGPHSHDYLPQER ddPTM_HeLa_A485_30min_R1 1 LDLQQGQNLLQGLSKLSPSTSGPHSHDYLPQER 33 1 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 0 LDLQQGQNLLQGLS(0.007)KLS(0.672)PS(0.144)T(0.144)S(0.031)GPHS(0.002)HDYLPQER 146.48 1.12E-09 273160000 101640 122730 112460 95337 162670 140730 170730 177330 130330 169140 TRUE FALSE FALSE 124249.4673 137082.2059 154063.6339 100545.0189 146474.0036 148098.4052 134252.1408 133839.5395 156486.0355 126976.5108 0.978523245 1.079587122 1.213323889 0.791839516 1.153551966 1.166344895 1.057299023 1.054049593 1.232401446 1 16.95420211 LDLQQGQNLLQGLSKLS(ph)PSTSGPHSHDYLPQER ddPTM_HeLa_A486_30min_R1 1 LDLQQGQNLLQGLSKLSPSTSGPHSHDYLPQER 33 1 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 0 LDLQQGQNLLQGLS(0.048)KLS(0.949)PS(0.002)T(0.001)SGPHSHDYLPQER 222.42 2.56E-39 445690000 242940 258250 208760 40540 323900 238630 298330 283010 235530 194040 TRUE FALSE FALSE 225911.1605 237785.3295 289597.4628 94379.16878 283273.4418 209190.2568 223684.6786 218574.8011 255945.93 145451.121 1.553175795 1.634812629 1.991029432 0.648872062 1.947550763 1.438216876 1.537868371 1.502737136 1.759669697 1 17.15017489 -10.49253954 3.050191076 0.984436998 1.55126134 0.184843198 0.350781876 55763667.09 63608085.59 7273021.6 0.084332193 3.22E-11 10.49253954 0.566824342 LDLTENLT(ph)GSKR ddPTM_HeLa_A485_30min_R1 1 LDLTENLTGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLT(0.002)ENLT(0.973)GS(0.025)KR 53.995 0.014541 0 64630 53438 46992 72785 94173 47608 75674 62985 57671 84870 TRUE FALSE FALSE 79006.72053 59687.10925 64376.2963 76761.06025 84796.80546 50100.68126 59505.6317 47537.82999 69245.04071 63713.47092 1.240031651 0.936805175 1.010403222 1.204785411 1.330908586 0.786343618 0.933956836 0.746118981 1.08681947 1 15.95931081 -6.27598248 24.99849974 0.896237035 1.128933118 0.410815897 0.138915898 854.2324054 1468357.081 0.049727891 0.044041262 5.30E-07 6.27598248 0.232696083 LDLTENLT(ph)GSKR ddPTM_HeLa_A486_30min_R1 2 LDLTENLTGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLTENLT(0.98)GS(0.02)KR;LDLTENLT(0.572)GS(0.428)KR ; 70.98 0.010113 147261000 107329 100372 75404 50796 100713 110927 133358 121777 77524 130749 TRUE FALSE FALSE 99805.79135 92418.15717 104602.4482 118255.6551 88080.63643 97241.95456 99990.41788 94051.03547 84243.84274 98008.59937 1.018337085 0.942959677 1.067278268 1.206584482 0.898703144 0.99217778 1.020220864 0.959620238 0.859555624 1 16.58062072 LDLTENLTGS(ph)KR ddPTM_HeLa_A485_30min_R1 2 LDLTENLTGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLTENLT(0.002)GS(0.998)KR;LDLTENLT(0.03)GS(0.97)KR ; 153.23 5.22E-08 348060000 217970 163140 122964 329910 281340 201717 279010 256300 191610 497860 TRUE FALSE FALSE 266456.6745 182217.8039 168453.5006 347932.1479 253328.8018 212278.5902 219397.2342 193442.0231 230064.3694 373752.6644 0.712922475 0.487535799 0.450708494 0.930915498 0.677797982 0.567965423 0.587011826 0.517566941 0.615552453 1 18.51172434 -10.27887433 5.411808416 1.000048351 0.613630372 0.438992509 0.130044357 7.89E-05 1.05E-05 0.130914683 0.031747513 5.26E-11 10.27887433 -0.386417979 LDLTENLTGS(ph)KR ddPTM_HeLa_A486_30min_R1 1 LDLTENLTGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLTENLT(0.002)GS(0.998)KR 137.19 6.63E-06 291490000 232360 214170 123390 110270 182540 209730 305130 250900 168270 294540 TRUE FALSE FALSE 216072.7639 197198.3892 171169.9125 256714.1327 159644.1311 183855.645 228783.2467 193775.5471 182855.7791 220785.2669 0.978655718 0.893168244 0.775277784 1.162732171 0.723074204 0.832735117 1.036225152 0.877665208 0.828206436 1 17.75228438 -10.0901542 4.404794778 1.000009754 0.900708765 0.055391242 0.122820406 1.14E-05 2.35E-06 0.114846263 0.027851574 8.13E-11 10.0901542 -0.099300989 LDLTGPHFESSILS(ph)PCEDVTLTK ddPTM_HeLa_A485_30min_R1 1 LDLTGPHFESSILSPCEDVTLTK 23 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LDLTGPHFESS(0.001)ILS(0.999)PCEDVTLTK 185.68 5.23E-21 161040000 124830 104470 75506 103340 163370 91189 110610 103910 63820 122340 TRUE FALSE FALSE 152598.0028 116686.8577 103438.8115 108985.2025 147104.3092 95963.51504 86977.2699 78425.90958 76628.08861 91842.8895 1.661511345 1.270505081 1.126258244 1.186648233 1.601695134 1.044866027 0.947022359 0.853913787 0.834338826 1 16.48688041 -6.473631835 5.553647413 0.907866158 1.340896254 0.644349501 0.162676478 0.144304135 10.43407649 0.061421596 0.052744046 3.36E-07 6.473631835 0.433030096 LDLTGPHFESSILS(ph)PCEDVTLTK ddPTM_HeLa_A486_30min_R1 2 LDLTGPHFESSILSPCEDVTLTK 23 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LDLTGPHFESSILS(1)PCEDVTLTK;LDLTGPHFES(0.001)S(0.001)ILS(0.999)PCEDVTLTK ; 251.51 5.63E-50 420810000 230070 305000 222118 63994 336720 271380 322420 288940 217570 239050 TRUE FALSE FALSE 213943.2811 280830.6892 308128.0381 148981.2661 294485.4378 237899.8948 241747.1058 223154.6695 236429.1428 179190.324 1.193944384 1.567220165 1.719557346 0.831413565 1.643422653 1.327638063 1.349108034 1.245349997 1.319430299 1 17.45113321 -10.65196675 0.219836642 0.631068146 1.441844345 0.1793147 0.237766589 44.48564912 1.673520987 9.275580534 0.518612671 2.23E-11 10.65196675 0.810776199 LDNARQS(ph)AER ddPTM_HeLa_A485_30min_R1 6 LDNARQSAER 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER ;;;;; 145.1 2.64E-06 9928140000 2082914 3315330 3145200 2346864 4327595 3424874 4356647 5408820 3142139 3312510 TRUE FALSE FALSE 2546251.033 3703029.004 4308740.363 2475067.238 3896724.447 3604195.107 3425813.778 4082298.414 3772737.476 2486762.219 1.023922196 1.489096535 1.732670832 0.995297105 1.566987152 1.449352527 1.377620165 1.641611885 1.517128355 1 21.24583713 LDNARQS(ph)AER ddPTM_HeLa_A486_30min_R1 6 LDNARQSAER 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER;LDNARQS(1)AER ;;;;; 156.6 8.26E-07 9038720000 3788203 3789486 3728354 1744351 5399280 3901105 4858000 4813320 3130607 4028677 TRUE FALSE FALSE 3522669.532 3489193.328 5172072.518 4060937.283 4722051.956 3419826.329 3642477.017 3717432.11 3401970.535 3019870.057 1.166497056 1.155411744 1.712680486 1.34473908 1.563660643 1.13244155 1.206170116 1.230990751 1.126528781 1 21.52605504 -6.287769838 24.46224689 1.157847116 1.391211033 0.358049498 0.166001783 736.802672 684521.9083 0.060392562 0.053278809 5.16E-07 6.287769838 0.233363917 LDNLVAILDINR ddPTM_HeLa_A486_30min_R1 3 LDNLVAILDINR 12 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 ;; ;; 147.71 0.00036656 32731000 19996.7 27052.9 24651.6 16823.6 46887.7 26695.1 29729.1 30300.1 25458.1 25145.9 FALSE FALSE TRUE 18595.03459 24909.12968 34197.35971 39166.19102 41006.60746 23401.72998 22290.56474 23401.42868 27664.82861 18849.20297 0.986515696 1.321495117 1.814260251 2.077869875 2.175508828 1.241523582 1.182573331 1.241507597 1.467692223 1 14.2022159 -6.436190155 24.99999435 1.238618882 1.687882092 0.304580433 0.338313318 110.7005344 31922.40751 0.132421952 0.116785151 3.66E-07 6.436190155 0.44926321 LDNS(ph)PNMNITQPSK ddPTM_HeLa_A485_30min_R1 1 LDNSPNMNITQPSK 14 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 LDNS(1)PNMNITQPSK 225.13 6.95E-28 328860000 137360 115480 103930 193970 181100 118460 163710 125350 94426 192980 TRUE FALSE FALSE 167915.2581 128984.3815 142378.0319 204566.0899 163069.0481 124662.3824 128732.0211 94607.71596 113376.4321 144873.6375 1.159046331 0.890323344 0.982773915 1.412031156 1.125595042 0.860490456 0.88858141 0.653036105 0.782588427 1 17.14443557 -6.333826286 4.054480377 0.811544764 1.111120762 0.456997938 0.150416128 0.224261953 7.149720716 0.058365905 0.051667539 4.64E-07 6.333826286 0.299575998 LDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_HeLa_A485_30min_R1 2 LDNTPASPPRSPAEPNDIPIAK 22 1 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 2 0 LDNT(0.026)PAS(0.974)PPRS(1)PAEPNDIPIAK;LDNT(0.099)PAS(0.901)PPRS(1)PAEPNDIPIAK ; 116.05 8.54E-05 595460000 803870 662010 591770 1031440 949310 715470 923710 762840 658060 1298670 TRUE FALSE FALSE 982688.1082 739426.3108 810690.3486 1087784.955 854793.3632 752930.9029 726351.8125 575752.2939 790126.6059 974935.4693 1.007951951 0.758436157 0.831532316 1.115750724 0.876769171 0.772287938 0.745025528 0.590554259 0.810439902 1 19.8949472 -6.225728202 4.069472472 0.754247172 0.917893393 0.197477231 0.130878623 0.321319793 11.95431339 0.045585811 0.043999653 5.95E-07 6.225728202 0.163646221 LDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_HeLa_A486_30min_R1 1 LDNTPASPPRSPAEPNDIPIAK 22 1 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 2 0 LDNT(0.003)PAS(0.997)PPRS(1)PAEPNDIPIAK 151.31 1.23E-09 283240000 392180 413580 257130 132020 358230 441800 452560 429290 352560 426710 TRUE FALSE FALSE 364690.2072 380806.4146 356697.6222 307349.2319 313297.453 387295.2079 339324.7013 331550.0383 383120.1847 319859.0386 1.140159143 1.190544486 1.115171307 0.960889626 0.979486009 1.210830901 1.060857004 1.036550475 1.197778204 1 18.28707673 -5.001036576 22.62146033 1.065498548 1.162228472 0.209074131 0.079623508 18.55032878 404989.4586 0.021368221 0.043412604 9.98E-06 5.001036576 0.096729924 LDNTPAS(ph)PPRSPAEPNDIPIAK ddPTM_HeLa_A485_30min_R1 1 LDNTPASPPRSPAEPNDIPIAK 22 1 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 LDNT(0.005)PAS(0.978)PPRS(0.017)PAEPNDIPIAK 124.28 3.88E-09 0 106810 89188 91148 168720 136280 100130 167770 127000 111050 217100 TRUE FALSE FALSE 130569.516 99617.76077 124867.4382 177936.7464 122711.4847 105372.652 131924.5689 95853.05087 133336.7164 162980.9654 0.801133529 0.611223283 0.766147371 1.091763973 0.752919118 0.646533487 0.809447708 0.588124206 0.818112201 1 17.31434396 -8.020089553 24.27627599 1.00000001 0.75894217 0.228119352 0.133725399 1651.103017 1995197.399 0.134522549 0.034733573 9.55E-09 8.020089553 -0.24105784 LDNVPHT(ph)PSSY(ph)IETLPK ddPTM_HeLa_A486_30min_R1 1 LDNVPHTPSSYIETLPK 17 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 2 0 LDNVPHT(0.804)PS(0.381)S(0.311)Y(0.492)IET(0.011)LPK 57.496 0.02982 55436000 27962 43982 33256 18644 47999 44017 47600 50407 34579 41336 TRUE FALSE FALSE 26002.0082 40496.70614 46133.61383 43404.17422 41978.51785 38586.63007 35689.97654 38930.42648 37576.33556 30985.19655 0.83917519 1.306969477 1.488892083 1.400803579 1.354792692 1.245324683 1.151839605 1.256420188 1.212718967 1 14.9192915 -6.555775532 4.875894971 1.177778655 1.298694048 0.090023395 0.173419517 0.520717012 30.48752559 0.069571422 0.054521041 2.78E-07 6.555775532 0.120915393 LDNVPHT(ph)PSSYIETLPK ddPTM_HeLa_A485_30min_R1 5 LDNVPHTPSSYIETLPK 17 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHT(0.938)PS(0.062)SYIETLPK;LDNVPHT(0.75)PS(0.25)SYIETLPK;LDNVPHT(0.993)PS(0.007)SYIETLPK;LDNVPHT(0.712)PS(0.287)S(0.001)YIETLPK;LDNVPHT(0.599)PS(0.063)S(0.336)YIET(0.001)LPK ;;;; 187.86 1.05E-17 3815960000 3361278 2998790 2628077 3578871 4666730 3319950 4764940 5627000 3202920 4816530 TRUE FALSE FALSE 4108982.695 3349472.404 3600312.046 3774375.661 4202093.975 3493777.448 3746871.643 4246969.427 3845716.665 3615857.713 1.136378426 0.926328598 0.995700697 1.043839653 1.16212924 0.966237536 1.036233154 1.174539975 1.06356969 1 21.78590648 -5.520809532 24.9720628 1.072323103 1.011757666 0.06669212 0.077112646 180.3453223 2176485.188 0.022535115 0.029564965 3.01E-06 5.520809532 -0.060565436 LDNVPHT(ph)PSSYIETLPK ddPTM_HeLa_A486_30min_R1 4 LDNVPHTPSSYIETLPK 17 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHT(0.954)PS(0.046)SYIETLPK;LDNVPHT(0.992)PS(0.008)SYIETLPK;LDNVPHT(0.749)PS(0.251)S(0.001)YIETLPK;LDNVPHT(0.81)PS(0.187)S(0.004)YIETLPK ;;; 207.17 3.48E-25 3080150000 2899440 3254920 1984490 853500 3380830 3427600 4114370 3846530 2339920 3066090 TRUE FALSE FALSE 2696204.229 2996988.285 2752937.674 1986991.134 2956774.776 3004737.561 3084911.109 2970759.088 2542746.15 2298321.107 1.17311903 1.303990237 1.197803765 0.864540263 1.286493331 1.307361949 1.342245476 1.292577908 1.106349388 1 21.13214895 LDNVPHTPS(ph)SYIETLPK ddPTM_HeLa_A486_30min_R1 1 LDNVPHTPSSYIETLPK 17 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHT(0.184)PS(0.408)S(0.408)YIETLPK 212.72 9.03E-26 148700000 133190 120940 78951 35490 142420 151670 192730 163920 111400 130850 TRUE FALSE FALSE 123854.0688 111356.2739 109522.9416 82622.51357 124556.3556 132958.4975 144506.9155 126598.9943 121056.2417 98084.30831 1.262730715 1.135311814 1.11662042 0.842362198 1.269890747 1.355553195 1.473292905 1.290716084 1.234205999 1 16.58173473 -5.97047338 24.99832191 1.302819985 1.089703686 0.249206662 0.149102955 251.3942657 212838.5402 0.046232014 0.052421504 1.07E-06 5.97047338 -0.213116299 LDNVPHTPSS(ph)YIETLPK ddPTM_HeLa_A485_30min_R1 2 LDNVPHTPSSYIETLPK 17 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHTPS(0.033)S(0.967)YIETLPK;LDNVPHTPS(0.034)S(0.966)YIETLPK ; 209.75 1.38E-25 536130000 420600 389060 317976 479090 592540 420650 717700 723060 385520 620240 TRUE FALSE FALSE 514161.0189 434557.1826 435608.5545 505261.4736 533544.6371 442674.5836 564357.5319 545728.4013 462890.3278 465625.5827 1.104237048 0.933276003 0.93553398 1.085123954 1.145866243 0.950709325 1.212041505 1.172032684 0.994125634 1 18.8288108 -5.292301737 16.26508881 1.090016238 0.985243155 0.163729775 0.089886319 14.69643872 7744.789195 0.025143779 0.037347315 5.10E-06 5.292301737 -0.104773083 LDNVPHTPSS(ph)YIETLPK ddPTM_HeLa_A486_30min_R1 2 LDNVPHTPSSYIETLPK 17 0 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PKI2;E9PP22 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHTPS(0.004)S(0.996)YIETLPK;LDNVPHTPS(0.032)S(0.968)YIETLPK ; 207.17 2.01E-25 494240000 322500 385970 222472 173340 360950 429690 529390 508750 283110 441700 TRUE FALSE FALSE 299894.4154 355384.3315 308619.1164 403544.2801 315676.2853 376679.2166 396931.0227 392918.7309 307650.2027 331095.445 0.905764244 1.073359168 0.932115259 1.21881556 0.953429864 1.137675623 1.198841689 1.186723456 0.929188871 1 18.33688764 -5.236285018 24.83840854 1.09794568 0.980707518 0.20785554 0.104770502 1133.996611 1119750.989 0.027688553 0.047931766 5.80E-06 5.236285018 -0.117238162 LDPFADGGKT(ph)PDPK ddPTM_HeLa_A485_30min_R1 2 LDPFADGGKTPDPK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LDPFADGGKT(1)PDPK;LDPFADGGKT(1)PDPK ; 114.34 0.00023356 1631620000 1962500 1117350 594950 4008930 1469840 1312590 2728770 1963560 976760 4377800 TRUE FALSE FALSE 2399051.354 1248014.363 815046.7629 4227927.695 1323497.569 1381315.183 2145745.997 1481993.831 1172786.773 3286495.027 0.72997261 0.379740226 0.247998782 1.286454919 0.402707918 0.420300402 0.65289799 0.450934451 0.356850311 1 21.64811837 -10.51045118 2.885587107 1.017454506 0.547782573 0.188900602 0.281268716 59017951.37 64610680.38 8129803.776 0.07611819 3.09E-11 10.51045118 -0.469671933 LDPFADGGKT(ph)PDPK ddPTM_HeLa_A486_30min_R1 3 LDPFADGGKTPDPK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LDPFADGGKT(1)PDPK;LDPFADGGKT(1)PDPK;LDPFADGGKT(1)PDPK ;; 144.68 1.07E-07 3289750000 9204800 8329000 2645600 6429500 5210620 10978100 15034100 12201000 6442600 19948700 TRUE FALSE FALSE 8559591.054 7668979.706 3670047.172 14968200.93 4557055.452 9623733.639 11272409.17 9423098.646 7001049.755 14953415.68 0.572417115 0.512858057 0.24543203 1.000988754 0.304750135 0.643580962 0.753835071 0.630163626 0.468190673 1 23.83397173 -14 0.207972957 2.988353427 0.512239642 0.28152738 0.20486257 189.5205732 1.886997008 157.4218328 0.435556156 1.00E-14 14 -2.476113784 LDPHLVLDQLR ddPTM_HeLa_A485_30min_R1 1 LDPHLVLDQLR 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 76.522 0.032689 215820000 390970 511980 528290 450980 582230 484010 590940 548260 480360 603280 FALSE FALSE TRUE 477939.9277 571851.6074 723726.455 475615.8955 524261.1369 509352.0152 464680.8415 413798.3754 576763.8459 452893.3985 1.055303365 1.262662713 1.598006192 1.050171844 1.157581759 1.124662044 1.02602697 0.913677207 1.273509059 1 18.78881198 LDPHLVLDQLR ddPTM_HeLa_A486_30min_R1 2 LDPHLVLDQLR 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 ; ; 86.911 0.011231 253660000 848260 1105440 967900 380370 1341480 1025070 1111730 1166960 936710 1012180 FALSE FALSE TRUE 788801.3544 1017840.908 1342696.801 885520.5828 1173219.07 898607.2855 833563.3953 901268.6826 1017904.777 758723.5398 1.039642654 1.341517503 1.769678586 1.1671189 1.546306405 1.184367215 1.098639164 1.187874944 1.341601682 1 19.53321477 -6.393183451 8.752625453 1.168392803 1.381512905 0.213681862 0.201469442 0.524659298 34.68394254 0.070989607 0.062531977 4.04E-07 6.393183451 0.213120103 LDPHNHVLYSNR ddPTM_HeLa_A486_30min_R1 1 LDPHNHVLYSNR 12 0 P31948;P31948-2;P31948-3;F5GXD8;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 67.964 0.026412 237660000 464430 532250 491370 91725 619470 475760 507640 530710 447100 433450 FALSE FALSE TRUE 431875.8553 490072.5716 681641.6233 213540.4355 541770.2963 417065.5684 380623.1027 409878.9183 485854.988 324911.2987 1.329211563 1.508327268 2.097931423 0.657226869 1.667440617 1.283629009 1.171467734 1.261510203 1.495346545 1 18.30968639 -7.770744954 0.046990191 4.90E-12 2.524683416 0.113692195 0.346324423 114.6490828 4.531887987 124.0765107 115.3332198 1.70E-08 7.770744954 2.524683416 LDPPPS(ph)PHANR ddPTM_HeLa_A485_30min_R1 2 LDPPPSPHANR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211;H7C0A7 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 LDPPPS(1)PHANR;LDPPPS(1)PHANR ; 101.72 0.00070649 302890000 567180 600380 591100 642560 699900 594100 674320 635210 600870 850490 TRUE FALSE FALSE 693347.2343 670589.2184 809772.4877 677661.4258 630215.4985 625206.1573 530246.0233 479423.7515 721459.0975 638478.4951 1.085936707 1.050292568 1.26828467 1.061369225 0.987058301 0.979212553 0.830483763 0.750884729 1.129966166 1 19.2842785 -5.874218079 1.931792105 0.91559854 1.129098818 0.374485573 0.1095563 0.329667436 2.522819673 0.039425759 0.047394612 1.34E-06 5.874218079 0.213500277 LDPPPS(ph)PHANR ddPTM_HeLa_A486_30min_R1 2 LDPPPSPHANR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211;H7C0A7 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 LDPPPS(1)PHANR;LDPPPS(1)PHANR ; 96.067 0.001947 892690000 564090 702360 563400 208435 748250 567550 676120 625980 587140 663210 TRUE FALSE FALSE 524550.204 646702.4356 781563.5684 485247.2137 654397.5078 497531.4514 506947.6247 483458.019 638033.7679 497137.8992 1.055140243 1.300851206 1.572126305 0.976081716 1.316329954 1.000791636 1.019732403 0.972482725 1.283414057 1 18.92328657 -5.891401199 1.457122235 1.057739858 1.280298735 0.194684959 0.17468124 0.620837842 2.735260618 0.068452497 0.084081625 1.28E-06 5.891401199 0.222558876 LDPPPS(ph)PHSNR ddPTM_HeLa_A485_30min_R1 2 LDPPPSPHSNR 11 0 Q96P47;Q96P47-2;Q96P47-4;H0Y873 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 LDPPPS(1)PHSNR;LDPPPS(0.99)PHS(0.01)NR ; 94.728 0.0015595 792630000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LDPPPS(ph)PHSNR ddPTM_HeLa_A486_30min_R1 2 LDPPPSPHSNR 11 0 Q96P47;Q96P47-2;Q96P47-4;H0Y873 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 LDPPPS(0.963)PHS(0.037)NR;LDPPPS(0.999)PHS(0.001)NR ; 89.466 0.0020987 934320000 1486160 1781400 1412550 542230 1947590 1524280 1752950 1773780 1502810 1706880 TRUE FALSE FALSE 1381987.859 1640235.376 1959527.189 1262338.843 1703305.102 1336229.831 1314343.369 1369929.015 1633074.781 1279466.138 1.080128514 1.281968571 1.531519382 0.986613717 1.331262353 1.044365139 1.027259206 1.070703612 1.276372021 1 20.28711054 -5.951426468 1.421631542 1.090243042 1.266692118 0.165899951 0.157312238 0.721767552 3.015573902 0.063890481 0.074733778 1.12E-06 5.951426468 0.176449076 LDQPGNLPGS(ph)NRR ddPTM_HeLa_A485_30min_R1 2 LDQPGNLPGSNRR 13 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDQPGNLPGS(1)NRR;LDQPGNLPGS(1)NRR ; 126.42 1.67E-05 1355950000 506730 566290 554400 551850 787350 455020 584900 564290 571900 831860 TRUE FALSE FALSE 619450.3403 632512.6894 759495.6305 581996.1681 708958.6694 478844.1436 459931.3368 425896.9927 686675.0842 624492.6112 0.991925812 1.012842551 1.216180331 0.931950447 1.135255497 0.766773113 0.736488036 0.681988842 1.099572792 1 19.25232498 -6.26381144 24.9979783 0.829559073 1.056968738 0.338215497 0.13770375 221.0832342 2329876.518 0.046378261 0.042845967 5.45E-07 6.26381144 0.227409665 LDQPGNLPGS(ph)NRR ddPTM_HeLa_A486_30min_R1 1 LDQPGNLPGSNRR 13 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDQPGNLPGS(1)NRR 97.823 0.00044184 0 487930 543650 436340 148600 487960 464770 493790 482250 421730 421570 TRUE FALSE FALSE 453728.6267 500569.1941 605302.5336 345948.3098 426755.5068 407431.4028 370238.5192 372452.2024 458285.896 316006.128 1.43582224 1.584049009 1.915477201 1.094751902 1.350465921 1.289314879 1.171618163 1.178623354 1.450243699 1 18.26959301 -5.273750696 24.99992961 1.233128165 1.639009449 0.588675108 0.162805235 517.7563748 1051378.844 0.044889234 0.067131102 5.32E-06 5.273750696 0.405881284 LDQPVS(ph)APPS(ph)PR ddPTM_HeLa_A485_30min_R1 4 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR ;;; 117.07 0.00046175 5726010000 3440630 4074380 4046980 3958830 5225600 3938470 4882600 4332690 3869430 5127600 TRUE FALSE FALSE 4205986.273 4550843.299 5544126.311 4175090.859 4705320.916 4144682.199 3839392.623 3270090.984 4645989.108 3849383.686 1.092638878 1.182226473 1.440263367 1.08461281 1.222356953 1.076713193 0.997404503 0.849510272 1.206943627 1 21.87619605 -6.420822668 2.580647359 1.001383318 1.211748949 0.35233802 0.122241475 0.310285724 4.043155597 0.048650791 0.040730329 3.79E-07 6.420822668 0.210365632 LDQPVS(ph)APPS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR;LDQPVS(1)APPS(1)PR ;;; 144.25 4.33E-07 6034800000 4701300 5783700 4700480 1825380 6287900 5444900 5979400 6181400 4933340 5757300 TRUE FALSE FALSE 4371763.148 5325378.548 6520631.739 4249576.89 5499212.95 4773163.598 4483290.876 4774030.159 5360965.883 4315634.606 1.01300586 1.233973456 1.510932304 0.984693394 1.274253604 1.106016619 1.038848579 1.106217415 1.242219597 1 22.04114129 -6.064929526 1.419140413 1.102754711 1.222450194 0.089592358 0.149670215 1.02611851 4.217509735 0.064205653 0.068186743 8.61E-07 6.064929526 0.119695482 LDQPVSAPPS(ph)PR ddPTM_HeLa_A485_30min_R1 5 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVS(0.001)APPS(0.999)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR ;;;; 183.23 6.84E-13 3210740000 1529470 1985620 1924890 1941130 2264150 1673390 2026910 1961020 1743800 2373630 TRUE FALSE FALSE 1869695.325 2217820.986 2636986.912 2047169.017 2038723.276 1761006.113 1593844.12 1480076.77 2093764.665 1781927.724 1.049254299 1.244618935 1.479850656 1.148850758 1.144111093 0.988259001 0.894449364 0.830604266 1.174999769 1 20.76500739 -6.039957906 1.956531089 0.958859703 1.253371537 0.458151359 0.130612695 0.289340624 2.217124229 0.050156392 0.053576419 9.12E-07 6.039957906 0.294511835 LDQPVSAPPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR ;; 184.59 6.16E-13 3021000000 2177080 2302180 1780930 750300 2474880 2030720 2196050 2246250 1752940 2316160 TRUE FALSE FALSE 2024477.934 2119746.872 2470553.791 1746736.318 2164457.473 1780190.413 1646575.063 1734827.91 1904886.251 1736178.46 1.166054055 1.220926835 1.422983782 1.00608109 1.246679142 1.025349901 0.948390445 0.999222113 1.097171918 1 20.72748382 -6.021562217 1.264518902 1.006469711 1.242698854 0.463371725 0.103752758 0.392172386 1.30367645 0.045676779 0.050937834 9.52E-07 6.021562217 0.236229143 LDQWLTTMLLR ddPTM_HeLa_A486_30min_R1 2 LDQWLTTMLLR 11 0 M0R213;M0R0Y2;A0A087WZQ7;Q9H115-3;Q9H115-2;P54920;Q9H115 M0R213 NAPA;NAPB Beta-soluble NSF attachment protein;Alpha-soluble NSF attachment protein 0 0 ; ; 174.4 5.76E-07 26289500 11711 13901.5 12596.5 3715 15691.9 10832.7 15830.9 14304.6 10322.5 15020.6 FALSE FALSE TRUE 10890.11938 12799.89451 17474.20215 8648.707746 13723.67558 9496.271613 11869.84138 11047.75485 11217.26261 11259.34399 0.967207271 1.136824181 1.551973379 0.768136026 1.218869908 0.843412513 1.054221399 0.981207684 0.996262537 1 13.45883515 -5.282878595 24.99628877 0.986835094 1.210483993 0.278188799 0.175584365 1053.964363 1228829.646 0.048050642 0.071346355 5.21E-06 5.282878595 0.223648899 LDRETEELHHDR ddPTM_HeLa_A485_30min_R1 4 LDRETEELHHDR 12 1 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 0 ;;; ;;; 192.18 8.11E-13 1895310000 903970 1253010 1316640 1014330 1834880 1310980 1566180 1613990 1360620 1465670 FALSE FALSE TRUE 1105055.008 1399538.62 1803719.926 1069740.279 1652192.905 1379620.886 1231552.848 1218156.422 1633683.954 1100305.443 1.004316588 1.271954646 1.639290197 0.972221202 1.501576599 1.253852641 1.119282702 1.107107513 1.484754951 1 20.06947264 -6.534223351 23.33347987 1.186691238 1.290348633 0.042584948 0.220070052 369.4832066 759933.2564 0.081802664 0.063439583 2.92E-07 6.534223351 0.103657395 LDRETEELHHDR ddPTM_HeLa_A486_30min_R1 4 LDRETEELHHDR 12 1 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 0 ;;; ;;; 146.37 6.14E-07 1457720000 835104.9 896388.6 964210.3 299830 1272230 816207.8 987437.1 1101014.1 743692.8 816863.3 FALSE FALSE TRUE 776568.359 825355.5027 1337578.351 698019.3926 1112655.05 715512.3802 740369.8935 850337.2244 808156.6907 612315.4128 1.268248917 1.347925408 2.184459713 1.139967046 1.817127296 1.168535636 1.209131565 1.388724188 1.31983725 1 19.22391547 -6.286554325 24.88797282 1.241033832 1.552529887 0.244484357 0.292340109 1166.310473 1155765.969 0.100815563 0.088945471 5.17E-07 6.286554325 0.311496055 LDRPAGGPS(ph)AESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_HeLa_A485_30min_R1 1 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 LDRPAGGPS(0.655)AES(0.216)PRPS(0.056)S(0.056)AY(0.018)NGDLNGLLVPDPLCSGDSTSANK 61.001 0.0032553 418290000 18567 22878 42564 21329 53527 22300 21514 22397 29933 28364 TRUE FALSE FALSE 22697.16509 25553.38309 58310.19484 22494.14926 48197.66394 23467.59352 16917.35815 16904.10063 35940.27854 21293.3768 1.065926053 1.200062504 2.73841934 1.056391829 2.263504957 1.102107652 0.794489212 0.7938666 1.687861858 1 14.37811714 -6.483214483 23.66285484 1.03707964 1.66667035 0.223801543 0.547613824 414.3247261 247177.3161 0.190008657 0.167534124 3.29E-07 6.483214483 0.62959071 LDRPAGGPS(ph)AESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_HeLa_A486_30min_R1 1 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 LDRPAGGPS(0.33)AES(0.284)PRPS(0.132)S(0.132)AY(0.121)NGDLNGLLVPDPLCSGDSTSANK 82.157 0.00015994 381550000 38470 47804 27934 17560 48762 40230 50708 49073 34034 46208 TRUE FALSE FALSE 35773.45166 44015.83694 38750.7929 40880.56743 42645.81527 35266.83163 38020.32207 37900.14916 36984.09452 34637.21604 1.032803896 1.270767168 1.118761764 1.180249804 1.23121371 1.018177431 1.097672573 1.0942031 1.067755979 1 15.08003536 -6.266260434 24.99984395 1.064081432 1.170620431 0.410633687 0.066135583 423.2983686 2195033.084 0.021685907 0.019780586 5.42E-07 6.266260434 0.106538999 LDRPAGGPSAES(ph)PRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_HeLa_A485_30min_R1 1 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 LDRPAGGPS(0.424)AES(0.528)PRPS(0.023)S(0.023)AY(0.002)NGDLNGLLVPDPLCSGDSTSANK 116.53 3.24E-07 541560000 49277 43271 68718 60467 80646 51818 59508 51825 58670 82660 TRUE FALSE FALSE 60238.49865 48331.16704 94139.64779 63770.1591 72616.60107 54531.11035 46793.62966 39114.83749 70444.53085 62054.38324 0.970737207 0.778851783 1.517050736 1.027649551 1.170209053 0.878763232 0.754074527 0.630331581 1.135206365 1 15.9212455 -6.342652699 5.895409846 0.845843783 1.094985321 0.188610095 0.216011166 0.360141998 20.62488193 0.077510851 0.068254922 4.54E-07 6.342652699 0.249141538 LDRPAGGPSAES(ph)PRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_HeLa_A486_30min_R1 2 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 LDRPAGGPS(0.091)AES(0.906)PRPS(0.001)S(0.001)AYNGDLNGLLVPDPLCSGDSTSANK;LDRPAGGPS(0.069)AES(0.31)PRPS(0.31)S(0.31)AY(0.001)NGDLNGLLVPDPLCSGDSTSANK ; 240.53 1.30E-52 2084610000 196116 228760 135475 91287 225730 225770 243620 233530 185268 253800 TRUE FALSE FALSE 182369.2811 210632.2245 187934.5481 212520.7494 197416.8386 197916.7929 182663.6993 180360.3169 201327.1794 190246.828 0.958593018 1.107152359 0.987845895 1.117079068 1.037687937 1.040315862 0.960140577 0.948033241 1.058241977 1 17.53751287 -6.680447772 7.536759244 0.987415595 1.045613823 0.174959031 0.052299085 0.351488169 27.92143586 0.019026225 0.014666107 2.09E-07 6.680447772 0.058198228 LDS(ph)LPEHEDSEK ddPTM_HeLa_A486_30min_R1 1 LDSLPEHEDSEK 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 LDS(1)LPEHEDSEK 121.99 5.56E-05 106930000 54960 53054 23107 22676 46360 60963 73467 63311 37202 95360 TRUE FALSE FALSE 51107.58781 48849.80782 32054.64923 52790.87398 40545.09651 53442.00489 55084.77955 48896.46737 40426.69931 71481.23531 0.714979079 0.683393447 0.448434461 0.738527723 0.567213148 0.74763684 0.770618741 0.6840462 0.565556809 1 16.12527695 -6.280648203 22.93119897 0.73489007 0.629333287 0.18250181 0.127179237 576.6129005 688347.6948 0.043430707 0.038385152 5.24E-07 6.280648203 -0.105556783 LDS(ph)PPPS(ph)PITEASEAAEAAEAGNLAVSSR ddPTM_HeLa_A485_30min_R1 2 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 LDS(0.965)PPPS(0.584)PIT(0.44)EAS(0.011)EAAEAAEAGNLAVSSR;LDS(0.996)PPPS(0.892)PIT(0.112)EASEAAEAAEAGNLAVSSR ; 136.91 1.49E-06 120645000 29220 32559 24280.1 42763 37244 26062 46271 39192 30811 58579 TRUE FALSE FALSE 35719.88819 36366.49182 33262.31937 45099.03441 33535.85659 27426.56602 36384.82285 29580.10055 36994.48508 43976.33337 0.812252534 0.826955979 0.756368638 1.025529665 0.762588739 0.623666502 0.827372818 0.672636809 0.841236234 1 15.4244397 -3.029956434 14.46293323 0.803919526 0.868293787 0 0.119915363 0 0 0.026979423 0 0.000933348 3.029956434 0.064374261 LDS(ph)PPPS(ph)PITEASEAAEAAEAGNLAVSSR ddPTM_HeLa_A486_30min_R1 3 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 LDS(0.926)PPPS(0.53)PIT(0.47)EAS(0.074)EAAEAAEAGNLAVSSR;LDS(0.995)PPPS(0.888)PIT(0.114)EAS(0.003)EAAEAAEAGNLAVSSR;LDS(0.869)PPPS(0.869)PIT(0.251)EAS(0.011)EAAEAAEAGNLAVSSR ;; 116.36 0.00010782 241498000 44099.6 41267.2 26346.5 20814.7 42681.8 38641 52335.8 51643.1 38193.5 65348 TRUE FALSE FALSE 41008.44577 37997.03678 36548.57038 48457.67352 37328.25065 33873.86629 39240.82929 39885.09349 41504.14333 48984.43546 0.837172979 0.775696125 0.746126194 0.989246341 0.762043092 0.691523052 0.801087711 0.814240138 0.84729247 1 15.58003579 -8.262428981 1.742770392 0.999836444 0.799768638 0.395841365 0.07347025 1.076951875 5.296644176 0.072815912 0.020616751 5.46E-09 8.262428981 -0.200067805 LDS(ph)PPPSPITEASEAAEAAEAGNLAVSSR ddPTM_HeLa_A485_30min_R1 4 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 LDS(0.757)PPPS(0.108)PIT(0.132)EAS(0.003)EAAEAAEAGNLAVSSR;LDS(0.991)PPPS(0.008)PIT(0.001)EASEAAEAAEAGNLAVSSR;LDS(0.873)PPPS(0.112)PIT(0.015)EASEAAEAAEAGNLAVSSR;LDS(0.862)PPPS(0.121)PIT(0.017)EASEAAEAAEAGNLAVSSR ;;; 193.19 3.74E-21 188804000 110855.5 112928.3 97030.4 159802 154636 114103.6 185102 186663 112808.3 245687 TRUE FALSE FALSE 135514.9235 126134.2823 132925.9827 168531.5786 139239.8969 120077.8881 145553.4456 140883.6066 135447.8911 184441.7524 0.734730188 0.683870548 0.720693558 0.913738762 0.754926122 0.651034196 0.789156705 0.763837931 0.734366754 1 17.49280575 -10.41092273 2.816058441 1.005462251 0.75048006 0.561479387 0.066384281 9305532.653 10564486.46 408623.3745 0.017914187 3.88E-11 10.41092273 -0.254982191 LDS(ph)PPPSPITEASEAAEAAEAGNLAVSSR ddPTM_HeLa_A486_30min_R1 2 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 LDS(0.72)PPPS(0.124)PIT(0.152)EAS(0.003)EAAEAAEAGNLAVSSR;LDS(0.724)PPPS(0.12)PIT(0.151)EAS(0.004)EAAEAAEAGNLAVSSR ; 169.91 2.49E-14 107946000 30342 26034.4 16486 14660.8 31878 32463 39975 39322 27270 43240 TRUE FALSE FALSE 28215.18249 23971.33933 22869.82071 34131.08332 27879.56399 28458.04512 29972.83219 30369.23899 29633.78556 32412.42255 0.870505203 0.739572591 0.705588133 1.053024755 0.860150578 0.877998091 0.924732859 0.936962948 0.914272468 1 14.98425923 -5.247607593 24.9954757 0.929219569 0.768657036 0.570685013 0.065750988 590.0501841 1066280.411 0.017602065 0.030285207 5.65E-06 5.247607593 -0.160562534 LDS(ph)PQIR ddPTM_HeLa_A486_30min_R1 2 LDSPQIR 7 0 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 LDS(1)PQIR;LDS(1)PQIR ; 137.28 0.00049724 233440000 339440 373880 279450 156774 463640 369180 467090 479110 298670 487510 TRUE FALSE FALSE 315647.0089 344252.3872 387660.5239 364977.7949 405485.9479 323634.3251 350219.1416 370027.1119 324558.9561 365434.3228 0.863758517 0.942036272 1.060821329 0.998750725 1.109600064 0.885615567 0.958364116 1.012568029 0.888145792 1 18.47925262 -4.414800023 3.829893205 0.990129818 0.866747863 0.255960312 0.065272739 0.329544379 7.905454727 0.016647815 0.08291094 3.85E-05 4.414800023 -0.123381955 LDS(ph)SIISEGK ddPTM_HeLa_A485_30min_R1 1 LDSSIISEGK 10 0 G5EA36;P30260;P30260-2;I3L328 G5EA36 CDC27 Cell division cycle protein 27 homolog 1 0 LDS(0.5)S(0.5)IIS(0.001)EGK 77.062 0.0051897 0 102370 89562 76018 125280 124570 83052 108680 99145 77885 153890 TRUE FALSE FALSE 125141.8533 100035.4968 104140.2216 132123.7292 112167.3734 87400.4743 85459.63017 74829.5333 93515.8051 115528.0551 1.083216135 0.86589787 0.901427982 1.143650597 0.970910254 0.756530301 0.739730536 0.647717416 0.80946403 1 16.81788372 -6.241727098 6.291895653 0.765135895 0.990101059 0.437672873 0.112876126 0.151660602 24.92397691 0.037780752 0.036572387 5.73E-07 6.241727098 0.224965165 LDS(ph)SPSVSSTLAAKDDPDGK ddPTM_HeLa_A486_30min_R1 1 LDSSPSVSSTLAAKDDPDGK 20 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.5)S(0.5)PS(0.001)VSSTLAAKDDPDGK 158.77 8.10E-11 574630000 633680 543690 218810 360540 469660 771970 1017300 898860 494640 1143400 TRUE FALSE FALSE 589262.3043 500606.0243 303539.0919 839355.3407 410750.8634 676732.1902 762760.7801 694209.2 537515.7935 857085.1977 0.687518937 0.584079652 0.354152764 0.979313775 0.479241579 0.789574003 0.889947443 0.809965219 0.627143947 1 19.7090791 -6.049750213 0.764991704 0.831829063 0.574115076 0.233293546 0.176740442 1.055703633 1.373305237 0.111914987 0.137364003 8.92E-07 6.049750213 -0.257713987 LDSDAGFHS(ph)LPR ddPTM_HeLa_A485_30min_R1 6 LDSDAGFHSLPR 12 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR ;;;;; 208.39 1.68E-17 916704000 1514893 1555480 1808710 1609522 2064730 1706888 2087150 1648780 1752378 2443820 TRUE FALSE FALSE 1851875.722 1737379.855 2477827.096 1697446.111 1859158.231 1796258.016 1641213.352 1244414.12 2104064.191 1834620.649 1.009405254 0.946996784 1.350593703 0.925230026 1.013374744 0.97908961 0.894579134 0.678295058 1.146866079 1 20.80705035 -5.984406252 1.480306887 0.912840895 1.077202412 0.123076244 0.153270394 0.727603168 3.272092245 0.061723672 0.06987025 1.04E-06 5.984406252 0.164361517 LDSDAGFHS(ph)LPR ddPTM_HeLa_A486_30min_R1 4 LDSDAGFHSLPR 12 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR;LDSDAGFHS(1)LPR ;;; 203.2 2.91E-17 885947000 1813800 1960610 1654280 389072 2329320 1922850 2028460 2043100 2138560 2276150 TRUE FALSE FALSE 1686661.986 1805244.123 2294861.519 905779.2786 2037154.966 1685628.317 1520917.853 1577930.731 2323932.103 1706187.225 0.988556216 1.058057461 1.345023269 0.530879182 1.193980904 0.98795038 0.891413223 0.924828593 1.362061601 1 20.70234454 -7.737265882 24.99875541 1.181031277 0.992312393 0.111908303 0.215088458 436.17783 451070.9733 0.139886846 0.052814045 1.83E-08 7.737265882 -0.188718884 LDSDFNIS(ph)S(ph)HSELENSSELK ddPTM_HeLa_A485_30min_R1 1 LDSDFNISSHSELENSSELK 20 0 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 2 0 LDS(0.007)DFNIS(0.655)S(0.681)HS(0.625)ELENS(0.024)S(0.008)ELK 49.25 0.037222 41948000 38305 40433 40122 56549 49882 50473 57339 56109 50125 68409 TRUE FALSE FALSE 46825.8151 45161.28763 54964.79742 59638.12868 44915.57293 53115.68823 45088.05423 42348.17977 60184.62773 51355.89527 0.911790455 0.87937884 1.070272402 1.161271328 0.874594293 1.03426662 0.877952842 0.824602113 1.171912736 1 15.64824228 LDSEDK(ac)DKEGKPLLK ddPTM_HeLa_A486_30min_R1 1 LDSEDKDKEGKPLLK 15 3 P13639 P13639 EEF2 Elongation factor 2 0 1 LDSEDK(0.605)DK(0.395)EGKPLLK 116.43 0.00037934 8144800 20794 26941 18400 17303 30669 35993 54215 46588 21744 68860 FALSE TRUE FALSE 19336.44798 24806.09704 25524.97277 40282.25845 26822.20804 31552.54961 40649.83357 35980.92941 23628.78743 51617.0078 0.374613888 0.480579912 0.494507021 0.780406695 0.519638956 0.611282036 0.787527896 0.697075072 0.457771352 1 15.65555889 -14 0.060428463 2.374680541 7.50E-18 0.537953614 0.124598868 330.4271819 1.454609704 68.45961302 11.24723706 1.00E-14 14 -2.374680541 LDSPPPS(ph)PIT(ph)EASEAAEAAEAGNLAVSSR ddPTM_HeLa_A486_30min_R1 1 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 LDS(0.583)PPPS(0.757)PIT(0.642)EAS(0.018)EAAEAAEAGNLAVSSR 145.64 5.32E-09 42435000 12380 14256 9450.6 9905.5 13705 16550 17925 19164 12638 21565 TRUE FALSE FALSE 11512.22593 13126.30264 13110.12542 23060.5046 11985.99111 14508.22927 13439.97541 14800.77555 13733.47202 16164.98364 0.71217059 0.812020781 0.811020024 1.426571478 0.741478703 0.897509679 0.831425241 0.915607209 0.84958156 1 13.98058443 -5.022764775 24.98986763 0.946543594 0.774451658 0.173111303 0.175111848 1373.182287 1507402.753 0.048034431 0.084003218 9.49E-06 5.022764775 -0.172091936 LDSQEPGRQT(ph)PDR ddPTM_HeLa_A485_30min_R1 4 LDSQEPGRQTPDR 13 1 Q8TB03-2;Q8TB03 Q8TB03-2 CXorf38 Uncharacterized protein CXorf38 1 0 LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR ;;; 235.95 1.86E-34 4500180000 2500160 3003330 2991580 2566460 3698630 2932550 3316780 3252300 2783410 3458690 TRUE FALSE FALSE 3056311.967 3354543.318 4098289.932 2706659.211 3330381.411 3086093.783 2608122.857 2454668.326 3342014.856 2596502.235 1.177088132 1.291947017 1.578388755 1.042425142 1.282641457 1.188558108 1.004475491 0.94537501 1.287121887 1 21.30813804 -6.169387695 1.13973629 1.058241401 1.311942135 0.297489122 0.152379562 0.596616016 1.615824084 0.07676561 0.075407951 6.77E-07 6.169387695 0.253700734 LDSQEPGRQT(ph)PDR ddPTM_HeLa_A486_30min_R1 5 LDSQEPGRQTPDR 13 1 Q8TB03-2;Q8TB03 Q8TB03-2 CXorf38 Uncharacterized protein CXorf38 1 0 LDS(0.002)QEPGRQT(0.998)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR;LDSQEPGRQT(1)PDR ;;;; 170.09 5.40E-12 7782990000 5982850 7219950 5907620 2629284 8415070 6655820 7400460 7409370 6084400 7008310 TRUE FALSE FALSE 5563483.11 6647814.867 8195208.676 6121106.029 7359573.453 5834692.6 5548786.634 5722418.196 6611800.691 5253383.56 1.059028538 1.265434894 1.559986737 1.165174018 1.400920639 1.110654216 1.056231012 1.089282389 1.258579469 1 22.32481549 -6.287251426 21.8289804 1.105609489 1.296790504 0.312336 0.138649058 197.2807375 166836.5033 0.048908761 0.043159216 5.16E-07 6.287251426 0.191181016 LDSQPQET(ph)SPELPR ddPTM_HeLa_A485_30min_R1 2 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 LDSQPQET(0.873)S(0.127)PELPR;LDSQPQET(0.702)S(0.298)PELPR ; 273.09 3.78E-48 4564250000 1439370 2010610 1729950 1611210 2400900 1692220 2140420 2378900 1780510 2201600 TRUE FALSE FALSE 1759552.891 2245733.35 2369930.494 1699226.323 2161857.966 1780822.023 1683101.781 1795471.045 2137842.025 1652781.637 1.064600944 1.358759862 1.433904177 1.02810092 1.308011849 1.077469632 1.018344918 1.086332885 1.29348123 1 20.6564647 -5.857435814 1.334286538 1.101928184 1.269846171 0.174155188 0.140249722 0.722557251 2.693287423 0.057012583 0.073435411 1.39E-06 5.857435814 0.167917988 LDSQPQETS(ph)PELPR ddPTM_HeLa_A485_30min_R1 6 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 LDSQPQET(0.001)S(0.999)PELPR;LDSQPQETS(1)PELPR;LDSQPQETS(1)PELPR;LDSQPQET(0.006)S(0.994)PELPR;LDSQPQET(0.028)S(0.972)PELPR;LDSQPQET(0.003)S(0.997)PELPR ;;;;; 308.03 1.39E-68 15776840000 4168480 5358870 5249300 4395090 6936670 4941600 6333880 6815400 4999040 6132490 TRUE FALSE FALSE 5095743.995 5985543.231 7191234.512 4635182.638 6246030.779 5200334.535 4980594.795 5143912.464 6002301.474 4603773.103 1.106862541 1.300138625 1.562030611 1.006822564 1.356719942 1.12958098 1.081850622 1.117325365 1.303778735 1 22.1343853 -6.078384619 1.287825879 1.130910554 1.286998156 0.140595571 0.157337311 0.887259688 3.03479704 0.070320212 0.074350447 8.35E-07 6.078384619 0.156087603 LDSQPQETS(ph)PELPR ddPTM_HeLa_A486_30min_R1 6 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 LDSQPQET(0.038)S(0.962)PELPR;LDSQPQET(0.025)S(0.975)PELPR;LDSQPQET(0.044)S(0.956)PELPR;LDSQPQET(0.344)S(0.656)PELPR;LDSQPQET(0.498)S(0.502)PELPR;LDSQPQET(0.075)S(0.925)PELPR ;;;;; 293.92 6.43E-58 22305220000 5688260 7085330 6051230 2381150 8065730 6262420 7478270 7660760 5336490 6227600 TRUE FALSE FALSE 5289542.348 6523862.646 8394428.314 5543437.537 7054050.933 5489826.292 5607127.749 5916572.181 5799061.25 4668168.425 1.13310872 1.397520837 1.798227388 1.187497329 1.511096064 1.176012901 1.201140841 1.26742903 1.242256217 1 22.15442518 -6.274467754 24.38777817 1.195567908 1.414755365 0.277315515 0.182648432 817.3057992 1529907.346 0.064071554 0.056871255 5.32E-07 6.274467754 0.219187457 LDSS(ph)IISEGK ddPTM_HeLa_A486_30min_R1 1 LDSSIISEGK 10 0 G5EA36;P30260;P30260-2;I3L328 G5EA36 CDC27 Cell division cycle protein 27 homolog 1 0 LDS(0.264)S(0.736)IISEGK 115.29 0.00049574 98052000 230900 260130 147510 109770 240930 321130 334030 316670 235740 350390 TRUE FALSE FALSE 214715.1024 239516.3514 204629.8225 255550.1075 210710.3128 281512.2456 250452.161 244571.1539 256174.133 262650.0633 0.817494957 0.911921925 0.779096795 0.972968002 0.802247333 1.071814878 0.95355835 0.931167313 0.975343884 1 18.00278241 -6.251754545 24.99913329 0.980023686 0.861954099 0.5155343 0.06257928 606.48955 1565511.477 0.019841544 0.01960202 5.60E-07 6.251754545 -0.118069587 LDSS(ph)PSVSSTLAAK ddPTM_HeLa_A485_30min_R1 6 LDSSPSVSSTLAAK 14 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.043)S(0.956)PS(0.002)VSSTLAAK;LDS(0.057)S(0.942)PS(0.002)VSSTLAAK;LDS(0.001)S(0.983)PS(0.016)VSSTLAAK;LDS(0.017)S(0.983)PSVSSTLAAK;LDS(0.028)S(0.972)PSVSSTLAAK;LDS(0.018)S(0.982)PSVSSTLAAK ;;;;; 307.43 2.45E-59 8963510000 5794590 4207220 3879080 7714680 5815400 4274750 5936460 3928530 4829170 9271320 TRUE FALSE FALSE 7083576.554 4699217.781 5314113.114 8136113.434 5236398.357 4498569.3 4668086.825 2965051.858 5798340.123 6960150.55 1.017733238 0.675160364 0.763505484 1.16895653 0.752339812 0.646332183 0.670687622 0.426003983 0.833076825 1 22.73068708 -5.989069104 24.99571156 0.679092488 0.889751821 0.178383521 0.186604561 337.2939705 771286.1472 0.057095733 0.064683597 1.03E-06 5.989069104 0.210659333 LDSS(ph)PSVSSTLAAK ddPTM_HeLa_A486_30min_R1 6 LDSSPSVSSTLAAK 14 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.049)S(0.569)PS(0.381)VSSTLAAK;LDS(0.299)S(0.562)PS(0.128)VS(0.005)S(0.005)T(0.001)LAAK;LDS(0.001)S(0.999)PSVSSTLAAK;LDS(0.018)S(0.982)PSVSSTLAAK;LDS(0.234)S(0.766)PSVSSTLAAK;LDS(0.226)S(0.762)PS(0.013)VSSTLAAK ;;;;; 353.65 4.17E-95 13296710000 7626110 9341880 4808590 2947480 7298110 9250460 9732870 9144960 7130890 9089710 TRUE FALSE FALSE 7091559.07 8601595.406 6670604.827 6861882.397 6382712.992 8109232.297 7297602.982 7062852.241 7749001.287 6813587.452 1.040796661 1.262417994 0.979015074 1.007088035 0.936762467 1.190156045 1.071036812 1.036583487 1.137286538 1 22.69998317 -6.419048915 0.006146245 0.000432225 2.134614292 0.023759878 0.095128941 32218.6804 88.33571023 15114.70014 15552.23055 3.81E-07 6.419048915 2.134182067 LDSS(ph)PSVSSTLAAKDDPDGK ddPTM_HeLa_A485_30min_R1 4 LDSSPSVSSTLAAKDDPDGK 20 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.395)S(0.524)PS(0.02)VS(0.02)S(0.02)T(0.02)LAAKDDPDGK;LDS(0.112)S(0.883)PS(0.005)VSSTLAAKDDPDGK;LDS(0.089)S(0.897)PS(0.012)VS(0.002)STLAAKDDPDGK;LDS(0.354)S(0.628)PS(0.016)VS(0.001)S(0.001)TLAAKDDPDGK ;;; 173.65 3.96E-14 1591680000 1949090 1150690 739524 3081150 1704230 1588590 2664580 1962370 1302500 4114390 TRUE FALSE FALSE 2382658.346 1285253.186 1013104.702 3249465.423 1534550.877 1671766.116 2095270.715 1481095.681 1563899.803 3088748.293 0.771399324 0.416108101 0.327998466 1.052033094 0.49681966 0.541243882 0.678355928 0.479513233 0.506321543 1 21.55859088 -10.21118077 5.056075894 1.000042898 0.582395649 0.287330785 0.195767298 9.33E-05 1.46E-05 0.186884927 0.045321608 6.15E-11 10.21118077 -0.417647249 LDSS(ph)PSVSSTLAAKDDPDGK ddPTM_HeLa_A486_30min_R1 1 LDSSPSVSSTLAAKDDPDGK 20 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.016)S(0.341)PS(0.275)VS(0.275)S(0.073)T(0.019)LAAKDDPDGK 111.53 1.20E-05 702480000 720210 666810 214640 374060 472610 830860 1095200 835420 475470 1178600 TRUE FALSE FALSE 669726.9982 613969.5471 297754.3563 870830.5839 413330.8469 728356.9408 821169.3762 645213.1031 516684.1224 883470.8886 0.758063459 0.694951645 0.33702792 0.985692449 0.467848859 0.824426645 0.929480967 0.730316201 0.584834349 1 19.75282307 LDSS(ph)PSVSSTLAAKDDPDGKQEAKPQQAAGMLSPK ddPTM_HeLa_A485_30min_R1 1 LDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPK 35 3 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.149)S(0.816)PS(0.021)VS(0.005)S(0.005)T(0.005)LAAKDDPDGKQEAKPQQAAGMLSPK 161.66 2.09E-13 311040000 328620 154350 106490 522570 298250 365630 793080 721760 210890 769620 TRUE FALSE FALSE 401720.3853 172399.8898 145885.0824 551116.6759 268555.1828 384773.8214 623631.9791 544747.2283 253213.6886 577767.8978 0.695297172 0.298389527 0.25249773 0.953872096 0.464814995 0.665966079 1.079381498 0.942847864 0.438261955 1 19.14013052 -5.801353305 0.977856501 0.84165128 0.433285412 0.266682684 0.248124356 0.745077365 1.535416715 0.120432113 0.180297475 1.58E-06 5.801353305 -0.408365868 LDSS(ph)PSVSSTLAAKDDPDGKQEAKPQQAAGMLSPK ddPTM_HeLa_A486_30min_R1 1 LDSSPSVSSTLAAKDDPDGKQEAKPQQAAGMLSPK 35 3 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.102)S(0.465)PS(0.102)VS(0.102)S(0.114)T(0.114)LAAKDDPDGKQEAKPQQAAGMLSPK 103.85 0.00064416 452370000 155640 127210 31719 102650 110110 174490 270130 242380 89330 295120 TRUE FALSE FALSE 144730.4397 117129.4163 44001.44626 238974.3876 96298.97707 152963.1979 202540.6169 187195.3651 97073.19633 221220.0311 0.654237498 0.52947021 0.198903535 1.08025655 0.435308578 0.691452746 0.915561832 0.846195366 0.438808348 1 17.7551225 -5.254469867 24.99995123 0.7546362 0.467730423 0.280486593 0.227395327 782.1688573 2805667.308 0.060803938 0.102451466 5.57E-06 5.254469867 -0.286905777 LDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_HeLa_A485_30min_R1 2 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LDS(0.003)S(0.003)EMDHS(0.994)ENEDYTMSSPLPGK;LDS(0.005)S(0.004)EMDHS(0.99)ENEDYTMSSPLPGK ; 219.67 4.09E-38 330070000 190276 174949 175095 232981 266695 198485 267003 300304 222657 375410 TRUE FALSE FALSE 232602.2398 195407.7637 239869.9268 245708.1621 240141.9094 208877.3677 209955.6278 226653.9731 267342.2176 281827.1959 0.825336387 0.69336021 0.85112413 0.871839786 0.852089198 0.74115405 0.744980012 0.80423031 0.948603334 1 18.10445131 -7.832364556 3.535722647 0.996510468 0.796066402 0.636670498 0.053920874 0.149960009 3.451150297 0.05473108 0.014845087 1.47E-08 7.832364556 -0.200444066 LDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_HeLa_A486_30min_R1 3 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LDS(0.005)S(0.005)EMDHS(0.989)ENEDYTMSSPLPGK;LDSSEMDHS(0.999)ENEDYTMSSPLPGK;LDSSEMDHS(1)ENEDYTMSSPLPGK ;; 273.53 7.42E-75 699820000 557400 623298 372838 149974 569629 662550 700010 630587 551316 591940 TRUE FALSE FALSE 518329.1384 573905.5965 517210.8585 349147.0513 498180.8192 580811.3173 524860.094 487016.1057 599104.5148 443714.3711 1.168159456 1.293412235 1.165639186 0.786873435 1.122751147 1.308975672 1.182878284 1.097589209 1.35020309 1 18.75927175 -6.021156189 24.67689311 1.196174068 1.100683084 0.065815958 0.15140097 1903.187997 2219904.199 0.052051162 0.052602398 9.52E-07 6.021156189 -0.095490985 LDSSEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_HeLa_A486_30min_R1 1 LDSSEMDHSENEDYTMSSPLPGKK 24 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LDSSEMDHS(1)ENEDYTMSSPLPGKK 204.25 1.06E-28 326700000 196580 188210 97281 67858 175820 228850 258000 224530 131600 221350 TRUE FALSE FALSE 182800.7571 173295.5542 134950.8085 157976.8534 153767.0161 200616.8138 193445.6712 173409.4205 143007.194 165922.5193 1.101723611 1.044436614 0.813336303 0.952112191 0.926739883 1.209099372 1.165879544 1.045122876 0.861891409 1 17.34015018 LDT(ph)PDINIVLK ddPTM_HeLa_A485_30min_R1 3 LDTPDINIVLK 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 LDT(1)PDINIVLK;LDT(1)PDINIVLK;LDT(1)PDINIVLK ;; 212.17 1.26E-14 184881000 409906 339489 237018 790020 532760 353434 638750 498040 284450 1052300 TRUE FALSE FALSE 501088.1755 379189.2854 324700.8213 833176.7922 479716.5438 371939.2577 502275.8444 375894.9091 341536.5059 789980.9761 0.634304104 0.479997996 0.411023596 1.054679565 0.607250754 0.470820525 0.635807519 0.475827799 0.432335102 1 19.59145839 -10.41444381 3.090526395 1.006437514 0.580633783 0.33693342 0.177562226 41796988.19 53649761.28 2402839.298 0.04807908 3.85E-11 10.41444381 -0.425803731 LDT(ph)PDINIVLK ddPTM_HeLa_A486_30min_R1 4 LDTPDINIVLK 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 LDT(1)PDINIVLK;LDT(1)PDINIVLK;LDT(1)PDINIVLK;LDT(1)PDINIVLK ;;; 192.4 2.69E-10 203580000 558190 620680 403393 441632 614080 660020 866630 764820 535420 1060960 TRUE FALSE FALSE 519063.7635 571495.0563 559597.5728 1028141.615 537056.3603 578593.443 649790.0077 590687.1819 581830.6367 795288.7103 0.652673371 0.718600741 0.703640786 1.292790406 0.675297352 0.727526288 0.817049204 0.742733015 0.731596751 1 19.60111917 -5.043133047 24.99989439 0.843077496 0.692006346 0.158481194 0.171405198 930.4236711 539272.1366 0.047460493 0.082211847 9.05E-06 5.043133047 -0.15107115 LDTGPQS(ph)LSGKS(ph)TPQPPSGK ddPTM_HeLa_A486_30min_R1 1 LDTGPQSLSGKSTPQPPSGK 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 0 LDT(0.168)GPQS(0.416)LS(0.416)GKS(0.526)T(0.473)PQPPSGK 76.198 0.00011778 0 184070 245490 144050 170050 321820 406080 519110 514200 221590 463140 TRUE FALSE FALSE 171167.6435 226036.4783 199830.0178 395884.9939 281454.3347 355981.9783 389223.1874 397127.8849 240797.5996 347166.7295 0.493041611 0.651089114 0.575602444 1.140331029 0.810718052 1.025391975 1.12114196 1.143911127 0.693607939 1 18.40526917 -5.249264024 24.81041075 0.996102888 0.581028807 0.64904405 0.140608404 421.1561549 858211.9077 0.03758328 0.064476149 5.63E-06 5.249264024 -0.415074081 LDTGPQSLS(ph)GK ddPTM_HeLa_A485_30min_R1 5 LDTGPQSLSGK 11 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 LDTGPQS(0.012)LS(0.988)GK;LDTGPQS(0.041)LS(0.959)GK;LDTGPQS(0.028)LS(0.972)GK;LDTGPQS(0.007)LS(0.993)GK;LDT(0.004)GPQS(0.184)LS(0.812)GK ;;;; 151.08 5.98E-07 2450750000 1772190 1753690 1643930 2761430 2688820 2316890 2902790 2910440 2037360 3720850 TRUE FALSE FALSE 2166407.552 1958768.79 2252088.117 2912279.929 2421111.64 2438198.778 2282585.203 2196650.027 2446239.464 2793310.572 0.775569882 0.701235591 0.806243366 1.042590809 0.866753473 0.872870637 0.817161266 0.786396632 0.875749188 1 21.41354456 -13.99999999 0.020336862 2.064177501 2.95E-11 0.266469116 0.083727175 5407.715221 8.305243621 571.1898846 308.9578184 1.00E-14 13.99999999 -2.064177501 LDTGPQSLS(ph)GK ddPTM_HeLa_A486_30min_R1 2 LDTGPQSLSGK 11 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 LDTGPQS(0.013)LS(0.987)GK;LDTGPQS(0.004)LS(0.996)GK ; 138.21 1.33E-05 1238800000 971220 1262850 639090 503910 1150280 1460000 1651640 1639590 1013540 1913300 TRUE FALSE FALSE 903142.4934 1162777.167 886562.7634 1173127.946 1006001.156 1279880.044 1238382.203 1266291.149 1101394.463 1434197.227 0.629719872 0.810751231 0.618159586 0.817968355 0.701438504 0.892401701 0.863467158 0.882926787 0.767951885 1 20.451812 -6.261494503 24.99998088 0.872914788 0.721166208 0.513834463 0.080308913 4.397977519 1994238.58 0.0255674 0.023998728 5.48E-07 6.261494503 -0.151748579 LDTGS(ph)PEPETR ddPTM_HeLa_A486_30min_R1 2 LDTGSPEPETR 11 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LDT(0.001)GS(0.999)PEPETR;LDT(0.002)GS(0.998)PEPETR ; 162.49 6.80E-08 1887980000 1358900 1655320 1473100 576889 2123030 1720920 1864340 1877440 1563290 1700230 TRUE FALSE FALSE 1263648.127 1524146.415 2043523.771 1343026.746 1856739.781 1508610.387 1397862.413 1449987.896 1698797.236 1274481.341 0.991499904 1.195895432 1.603415997 1.05378298 1.456859132 1.183705354 1.096808849 1.137708218 1.332932214 1 20.28147882 -6.505393257 24.42284741 1.151469274 1.269900958 0.084347843 0.183009687 1476.142106 2061807.574 0.064570004 0.055676129 3.12E-07 6.505393257 0.118431684 LDTIPDIPPPRPPKPHPAHDRS(ph)PVETCSIPR ddPTM_HeLa_A485_30min_R1 1 LDTIPDIPPPRPPKPHPAHDRSPVETCSIPR 31 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 LDTIPDIPPPRPPKPHPAHDRS(0.716)PVET(0.133)CS(0.151)IPR 57.262 0.0075478 229960000 219500 195480 194180 247860 292700 215180 283430 254800 231620 366180 TRUE FALSE FALSE 268327.0177 218339.6856 266015.2625 261399.9642 263557.7603 226446.4921 222872.8651 192309.9005 278104.0095 274898.065 0.976096422 0.794256902 0.967686922 0.950897796 0.958747237 0.82374713 0.810747304 0.69956804 1.011662303 1 18.06853723 -6.266108921 24.87127077 0.846718103 0.925327637 0.062632377 0.098741408 792.6828545 4222033.322 0.033316444 0.030353334 5.42E-07 6.266108921 0.078609534 LDTIPDIPPPRPPKPHPAHDRS(ph)PVETCSIPR ddPTM_HeLa_A486_30min_R1 1 LDTIPDIPPPRPPKPHPAHDRSPVETCSIPR 31 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 LDTIPDIPPPRPPKPHPAHDRS(0.883)PVET(0.053)CS(0.063)IPR 83.185 0.000245 247000000 78013 79612 63457 34546 88287 80704 97527 95188 65586 98958 TRUE FALSE FALSE 72544.69156 73303.25518 88029.24984 80424.83386 77213.22122 70747.56102 73124.71306 73515.77034 71271.04729 74178.27269 0.977977633 0.988203857 1.186725528 1.084210119 1.040914252 0.953750451 0.985796924 0.991068782 0.960807588 1 16.17870905 -6.109664734 4.725134761 0.978575481 1.063270138 0.332854151 0.054999104 0.288264085 10.1186852 0.019891096 0.020061606 7.77E-07 6.109664734 0.084694657 LDVFARPAS(ph)PSLQLLPWR ddPTM_HeLa_A485_30min_R1 2 LDVFARPASPSLQLLPWR 18 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 LDVFARPAS(0.977)PS(0.023)LQLLPWR;LDVFARPAS(0.783)PS(0.217)LQLLPWR ; 251.52 9.47E-47 4407700000 1073310 1452020 1265960 786290 1611330 1430080 1554430 1736600 1062030 1198000 TRUE FALSE FALSE 1312064.107 1621821.108 1734291.285 829243.0317 1450900.327 1504956.777 1222313.332 1310696.127 1275169.679 899360.6476 1.458885387 1.803304506 1.928360208 0.922036153 1.61325752 1.67336294 1.359091412 1.45736433 1.417862437 1 19.77854023 -12.03738464 0.138035511 2.71E-13 1.754346948 0.301323683 0.253406066 95.66908908 1.378492064 30.32063514 1.882547475 9.18E-13 12.03738464 1.754346948 LDVFARPAS(ph)PSLQLLPWR ddPTM_HeLa_A486_30min_R1 2 LDVFARPASPSLQLLPWR 18 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 LDVFARPAS(0.549)PS(0.451)LQLLPWR;LDVFARPAS(0.872)PS(0.128)LQLLPWR ; 143.31 2.72E-08 4710700000 201298 209397 222583 81664 282847 168750 234059 227883 165471 234420 TRUE FALSE FALSE 187188.0497 192803.6191 308773.0986 190117.9191 247369.6918 147931.3407 175494.9626 175999.0156 179814.1595 175719.7062 1.065264982 1.097222522 1.75719107 1.081938521 1.407751567 0.841859709 0.998721011 1.001589516 1.023301048 1 17.42291647 -6.260091958 24.99959839 0.974795272 1.286914341 0.382339922 0.196173066 134.8528064 2502028.637 0.066773948 0.063338258 5.49E-07 6.260091958 0.312119069 LDVTILS(ph)PSR ddPTM_HeLa_A485_30min_R1 6 LDVTILSPSR 10 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.994)PS(0.006)R;LDVTILS(0.973)PS(0.027)R;LDVTILS(0.885)PS(0.115)R;LDVTILS(0.883)PS(0.117)R;LDVTILS(0.928)PS(0.072)R;LDVTILS(0.992)PS(0.007)R ;;;;; 173.6 1.64E-07 4874285000 1917925 1591386 1739810 2619910 2578340 1954482 2716140 2535480 1971364 3587841 TRUE FALSE FALSE 2344560.799 1777484.749 2383438.119 2763029.049 2321631.416 2056815.655 2135814.5 1913649.555 2366998.672 2693458.268 0.870464869 0.659926597 0.884898848 1.025829537 0.86195188 0.763633757 0.79296365 0.710480492 0.878795376 1 21.36102828 -6.215139657 23.20425441 0.808816471 0.85999284 0.003251605 0.110305516 718.603228 360144.5352 0.037661321 0.037661014 6.09E-07 6.215139657 0.051176369 LDVTILS(ph)PSR ddPTM_HeLa_A486_30min_R1 7 LDVTILSPSR 10 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.5)PS(0.5)R;LDVTILS(0.998)PS(0.002)R;LDVTILS(0.998)PS(0.002)R;LDVTILS(0.975)PS(0.025)R;LDVTILS(0.984)PS(0.016)R;LDVTILS(0.978)PS(0.021)R;LDVTILS(0.995)PS(0.005)R ;;;;;; 144.28 5.70E-06 7212242000 1742160 2206120 1850820 889825 2488750 2303530 2626980 2576900 1937730 2223790 TRUE FALSE FALSE 1620043.581 2031299.017 2567507.071 2071557.569 2176587.768 2019343.889 1969681.819 1990196.123 2105693.997 1666938.51 0.971867631 1.218580652 1.540253018 1.242731845 1.305739687 1.211408746 1.181616363 1.193922938 1.263210361 1 20.66876946 -6.495469288 3.839252226 1.176937213 1.26876868 0.082181773 0.143383448 0.666207728 21.31168926 0.056821748 0.046703208 3.20E-07 6.495469288 0.091831466 LDVTILS(ph)PSRK ddPTM_HeLa_A485_30min_R1 3 LDVTILSPSRK 11 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.903)PS(0.097)RK;LDVTILS(0.995)PS(0.005)RK;LDVT(0.034)ILS(0.913)PS(0.054)RK ;; 149.32 4.11E-07 4684580000 3680730 3236200 2792860 4177950 5116300 3371700 4433350 4218910 3680040 5517000 TRUE FALSE FALSE 4499495.69 3614645.439 3826055.135 4406180.829 4606903.208 3548236.998 3486128.555 3184215.708 4418590.273 4141713.433 1.086385083 0.872741559 0.923785577 1.063854586 1.112318194 0.856707509 0.841711676 0.768816037 1.066850796 1 21.98179631 -6.291390981 24.6479403 0.8882991 1.002090963 0.190629543 0.10379582 946.0842319 778553.774 0.037220314 0.032829492 5.11E-07 6.291390981 0.113791863 LDVTILS(ph)PSRK ddPTM_HeLa_A486_30min_R1 4 LDVTILSPSRK 11 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.994)PS(0.006)RK;LDVTILS(0.994)PS(0.006)RK;LDVTILS(0.967)PS(0.033)RK;LDVTILS(0.996)PS(0.004)RK ;;; 210.07 2.51E-15 7241760000 2306615 2237579 1424574 1039873.1 2491123 2524208 2947402 2891209 1791302 2351832 TRUE FALSE FALSE 2144933.2 2060265.091 1976207.204 2420877.129 2178663.125 2212796.881 2209930.845 2232943.825 1946573.5 1762917.959 1.216694849 1.168667595 1.120986484 1.373221661 1.235827857 1.255189936 1.253564202 1.266618117 1.10417702 1 20.74953391 -7.96329091 3.692051207 1.001018711 1.235632589 0.603698689 0.062423163 0.135949802 4.16692082 0.062789456 0.016598782 1.09E-08 7.96329091 0.234613877 LDVTILSPS(ph)R ddPTM_HeLa_A486_30min_R1 1 LDVTILSPSR 10 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.068)PS(0.932)R 122.33 0.00015835 86351000 121940 142500 123390 46347 158900 133970 151410 148310 106080 120330 TRUE FALSE FALSE 113392.6357 131207.781 171169.9125 107898.1582 138969.2803 117442.1435 113525.6165 114543.0506 115275.0998 90198.58478 1.257144289 1.454654542 1.897700645 1.196228949 1.540703556 1.302039758 1.258618601 1.269898534 1.278014506 1 16.46081718 -7.57710243 0.414504032 1.000081312 1.511284128 0.364035008 0.182569431 1.166606085 0.567445333 0.230619708 0.160091719 2.65E-08 7.57710243 0.511202816 LDVTILSPSR ddPTM_HeLa_A485_30min_R1 2 LDVTILSPSR 10 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 169.09 8.47E-06 81536000 41957 45145 47934 46055 54585 46782 53348 50167 46306 63394 FALSE FALSE TRUE 51290.1899 50424.31504 65666.7813 48570.86803 49150.32574 49231.43318 41949.76399 37863.46459 55599.18946 47591.04248 1.077727808 1.059533736 1.379813887 1.020588445 1.032764217 1.034468476 0.881463439 0.795600655 1.168270047 1 15.53840244 -5.500880455 24.17758569 0.977390222 1.167596892 0.318024705 0.122601004 598.1628664 657420.237 0.035186416 0.051633867 3.16E-06 5.500880455 0.19020667 LDVTILSPSR ddPTM_HeLa_A486_30min_R1 2 LDVTILSPSR 10 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 143.03 0.0013588 84068000 42393 56081 46272 17109.8 54080 50681 55456 53818 49036 52067 FALSE FALSE TRUE 39421.46962 51636.93732 64189.75761 39832.47908 47296.78212 44428.49351 41580.32225 41564.81624 53286.47996 39029.0843 1.010053664 1.323037377 1.64466471 1.020584515 1.211834276 1.13834322 1.06536761 1.064970316 1.365301823 1 15.25226199 LDYFLLSHSLLPALCDSK ddPTM_HeLa_A485_30min_R1 1 LDYFLLSHSLLPALCDSK 18 0 P27695 P27695 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 0 180.64 6.82E-18 8753800 14276 12707 13680 18444 21860 16342 24218 23786 14241 28925 FALSE FALSE TRUE 17451.64695 14192.97311 18740.80127 19451.54902 19683.54164 17197.64185 19043.62646 17952.4462 17099.03807 21714.52983 0.803685232 0.653616414 0.863053514 0.89578495 0.906468701 0.791987761 0.876999254 0.826748097 0.787446848 1 14.40637309 -14 0.122897724 1.505731107 0.751436786 0.357337927 0.070037619 189.9604798 1.499626951 24.53547851 0.680634918 1.00E-14 14 -0.754294321 LDYFLLSHSLLPALCDSK ddPTM_HeLa_A486_30min_R1 2 LDYFLLSHSLLPALCDSK 18 0 P27695 P27695 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 0 ; ; 171.56 5.63E-15 24763000 19680.9 27415.3 20795.4 9892 31633 29162.4 37354 37465 28687.3 36095 FALSE FALSE TRUE 18301.37054 25242.81178 28847.9358 23029.07591 27665.29417 25564.63959 28007.63411 28935.03736 31173.93826 27056.57706 0.676411155 0.932963979 1.066207885 0.851145208 1.022497935 0.944858602 1.035150679 1.069427123 1.152175983 1 14.72369171 -4.29221456 2.828162575 1.012566652 0.627583864 0.645825908 0.075816394 0.247489612 2.888857723 0.020258818 0.212180461 5.10E-05 4.29221456 -0.384982788 LDYGQHVVAGT(ph)PGR ddPTM_HeLa_A485_30min_R1 2 LDYGQHVVAGTPGR 14 0 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 0 LDYGQHVVAGT(1)PGR;LDYGQHVVAGT(1)PGR ; 119.38 0.0001279 317840000 424250 389740 431950 443110 521500 354120 435080 374360 390150 541480 TRUE FALSE FALSE 518622.9489 435316.7027 591746.2799 467315.9773 469577.6289 372661.1756 342121.6037 282547.623 468449.5263 406499.0012 1.275828347 1.070892429 1.455713983 1.149611625 1.155175357 0.916757912 0.841629629 0.695075811 1.15240019 1 18.63289228 -6.143912722 2.282533277 0.89197435 1.241330355 0.526165571 0.143173352 0.231943446 2.37201405 0.052200284 0.052016099 7.18E-07 6.143912722 0.349356006 LDYGQHVVAGT(ph)PGR ddPTM_HeLa_A486_30min_R1 2 LDYGQHVVAGTPGR 14 0 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 0 LDYGQHVVAGT(1)PGR;LDYGQHVVAGT(1)PGR ; 137.61 8.80E-06 569460000 511680 692950 551350 204078 626760 653910 669680 668390 547860 593890 TRUE FALSE FALSE 475813.8743 638038.1183 764847.4857 475103.8975 548145.9165 573237.2327 502118.9808 516212.1879 595348.9459 445176.0784 1.068821748 1.433226423 1.718078582 1.067226926 1.231301373 1.287664051 1.127910966 1.159568568 1.337333641 1 18.76401655 -5.305210019 24.9999626 1.18497757 1.409361709 0.274973258 0.173127179 605.1331448 345625.4689 0.048719233 0.072262718 4.95E-06 5.305210019 0.224384138 LDYLDLYLIHWPTGFKPGK ddPTM_HeLa_A486_30min_R1 1 LDYLDLYLIHWPTGFKPGK 19 1 P15121;E9PCX2 P15121 AKR1B1 Aldose reductase 0 0 165.71 9.70E-15 10489000 12020 28239 19321 8914.8 28222 44419 42886 37923 40197 33427 FALSE FALSE TRUE 11177.46007 26001.2388 26802.60863 20754.10493 24682.1336 38939.0354 32155.4692 29288.76075 43681.30833 25056.66163 0.446087361 1.037697646 1.069679953 0.828286914 0.985052756 1.55403924 1.28331019 1.168901156 1.743301202 1 14.61290659 -6.107634933 5.269595458 1.354429091 0.878475638 0.486819681 0.246749131 0.205535979 8.346193434 0.079780631 0.080300031 7.80E-07 6.107634933 -0.475953454 LDYVPS(ph)SAS(ph)R ddPTM_HeLa_A486_30min_R1 1 LDYVPSSASR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 2 0 LDYVPS(0.996)S(0.023)AS(0.981)R 82.543 0.012557 113340000 387320 544960 511230 191260 587460 480490 570240 576760 407160 458790 TRUE FALSE FALSE 360170.8681 501775.3849 709191.9472 445262.9457 513775.289 421212.0291 427559.9206 445444.3386 442452.9566 343905.9978 1.047294524 1.459048077 2.06216801 1.294722827 1.493941054 1.224788261 1.243246478 1.295250276 1.286552021 1 18.39165475 -6.188459158 2.044456201 1.224231365 1.507703263 0.203081719 0.250945209 0.570285435 4.687271143 0.100975886 0.097500918 6.48E-07 6.188459158 0.283471899 LDYVPSSAS(ph)R ddPTM_HeLa_A485_30min_R1 4 LDYVPSSASR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 LDYVPS(0.001)S(0.005)AS(0.994)R;LDYVPS(0.01)S(0.038)AS(0.952)R;LDYVPSS(0.001)AS(0.999)R;LDYVPSSAS(1)R ;;; 177.41 3.61E-08 1308878000 1335590 1742830 1708870 1437160 1934030 1551050 1877420 1708800 1426030 1980460 TRUE FALSE FALSE 1632687.388 1946638.808 2341052.125 1515668.412 1741471.182 1632260.58 1476293.88 1289714.121 1712221.141 1486767.77 1.098145535 1.30930926 1.574591656 1.019438572 1.171313515 1.097858464 0.992955262 0.867461716 1.151639937 1 20.50374789 -5.299660482 24.84409787 1.042982918 1.325544968 0.484100515 0.134535177 429.4789379 279164.6898 0.03901064 0.057863564 5.02E-06 5.299660482 0.28256205 LDYVPSSAS(ph)R ddPTM_HeLa_A486_30min_R1 2 LDYVPSSASR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 LDYVPSSAS(1)R;LDYVPSSAS(1)R ; 202.3 8.24E-14 1189030000 1840410 1920390 1620920 627840 2063600 1627670 1885160 1949210 1587860 1883240 TRUE FALSE FALSE 1711406.763 1768211.302 2248583.634 1461643.249 1804764.046 1426864.624 1413473.029 1505417.434 1725496.983 1411664.446 1.212332554 1.25257196 1.592859861 1.035404167 1.278465326 1.010767558 1.00128117 1.066413083 1.222313835 1 20.42896577 -5.297265581 24.92632786 1.091702581 1.342586704 0.468465122 0.129069783 506.9036848 352680.7271 0.036543157 0.054204749 5.04E-06 5.297265581 0.250884123 LEAEIATYR ddPTM_HeLa_A485_30min_R1 2 LEAEIATYR 9 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 157.68 1.44E-05 141503000 47912 42613 48129 62259 75529 47658 58706 59302 46155 73567 FALSE FALSE TRUE 58569.85911 47596.21967 65933.91991 65660.05152 68009.06756 50153.29919 46162.98352 44758.09152 55417.88514 55228.1008 1.060508297 0.861811632 1.193847316 1.188888457 1.231421443 0.908111966 0.83586042 0.810422428 1.003436373 1 15.7531149 -6.358802097 7.975623065 0.893688819 1.102746473 0.428085691 0.112174122 0.305839825 22.47415801 0.04259422 0.037512683 4.38E-07 6.358802097 0.209057654 LEAEIATYR ddPTM_HeLa_A486_30min_R1 1 LEAEIATYR 9 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 149.82 0.00027933 51037000 21695 31076 26419 17303 40157 34235 39300 38782 25037 32789 FALSE FALSE TRUE 20174.29253 28613.42458 36649.14433 40282.25845 35120.13461 30011.43378 29466.72433 29952.18521 27207.22732 24578.42098 0.820813206 1.164168545 1.491110611 1.638927842 1.428901175 1.221048081 1.19888598 1.218637488 1.106955868 1 14.58510461 -7.645297799 0.998075609 1.010026709 1.314707168 0.168193937 0.207161472 0.966227687 1.906032176 0.214649689 0.076376564 2.26E-08 7.645297799 0.304680459 LEAIIT(ph)PPPAK ddPTM_HeLa_A486_30min_R1 1 LEAIITPPPAK 11 0 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 1 0 LEAIIT(1)PPPAK 94.547 0.010455 221350000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LEAIIT(ph)PPPAKK ddPTM_HeLa_A485_30min_R1 1 LEAIITPPPAKK 12 1 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 1 0 LEAIIT(1)PPPAKK 82.102 0.0042739 295370000 859760 655600 482410 1075300 925800 829370 1069100 1064400 791720 1700700 TRUE FALSE FALSE 1051010.646 732266.717 660873.5338 1134040.916 833624.1013 872794.5308 840678.0513 803354.2311 950610.9419 1276746.789 0.823194274 0.573541068 0.517623024 0.888226958 0.652928293 0.683608166 0.658453233 0.6292197 0.744557143 1 20.284041 -8.110880252 5.103465723 0.999988136 0.675524552 0.467903061 0.102676124 0.793500214 35.50580099 0.097735731 0.025453731 7.75E-09 8.110880252 -0.324463584 LEAIIT(ph)PPPAKK ddPTM_HeLa_A486_30min_R1 2 LEAIITPPPAKK 12 1 D6RCF2;O75367-2;O75367-3;O75367 D6RCF2 H2AFY Histone H2A;Core histone macro-H2A.1 1 0 LEAIIT(1)PPPAKK;LEAIIT(1)PPPAKK ; 109.83 0.00037722 670220000 1337100 2024490 1005690 843000 1922210 2215400 2584300 2271100 1810450 2265500 TRUE FALSE FALSE 1243376.195 1864062.039 1395120.101 1962546.603 1681108.498 1942086.473 1937680.806 1754020.108 1967381.264 1698204.054 0.732171256 1.0976667 0.821526776 1.155660062 0.989933155 1.143611963 1.141017654 1.032867695 1.158506988 1 20.69557839 -3.353231867 0.665247777 1.091164629 2.34E-11 0.460876373 0.10298353 8.410353257 1.154477275 0.040604998 9.151438014 0.000443372 3.353231867 -1.091164629 LEALS(ph)VK ddPTM_HeLa_A485_30min_R1 4 LEALSVK 7 0 P43487-2;P43487;C9JXG8;F6WQW2;Q5T0Z6;Q9C010;Q9C010-2 P43487-2 RANBP1;PKIB Ran-specific GTPase-activating protein;cAMP-dependent protein kinase inhibitor beta 1 0 LEALS(1)VK;LEALS(1)VK;LEALS(1)VK;LEALS(1)VK ;;; 123.35 0.0010815 449207000 1206370 1054230 618870 1417860 726970 906610 1291900 967740 626950 1567300 TRUE FALSE FALSE 1474722.845 1177513.028 847815.7663 1495314.102 654590.3143 954078.6977 1015875.011 730400.2476 752773.1143 1176600.954 1.25337553 1.000775177 0.720563555 1.270876159 0.556340119 0.810877039 0.863398086 0.620771422 0.639786252 1 20.16619368 -1 0.478195806 0.753482441 14.14088919 0.331599793 0.197048585 109.3155929 1.23364067 0.111331754 1452.866725 0.1 1 13.38740675 LEALS(ph)VK ddPTM_HeLa_A486_30min_R1 4 LEALSVK 7 0 P43487-2;P43487;C9JXG8;F6WQW2;Q5T0Z6;Q9C010;Q9C010-2 P43487-2 RANBP1;PKIB Ran-specific GTPase-activating protein;cAMP-dependent protein kinase inhibitor beta 1 0 LEALS(1)VK;LEALS(1)VK;LEALS(1)VK;LEALS(1)VK ;;; 113.62 0.0026776 599510000 1419860 1457170 461420 527760 651360 1250080 1416390 1113340 967920 2453140 TRUE FALSE FALSE 1320335.146 1341698.542 640094.1813 1228651.952 569660.3551 1095857.839 1061994.241 859856.786 1051820.085 1838857.777 0.718019176 0.72963693 0.34809336 0.668160402 0.309790329 0.59594486 0.577529298 0.467603747 0.571996431 1 20.81037847 -8.061811556 20.03611564 1.000000002 0.54728406 0.495058616 0.135176162 1713.721979 555501.2039 0.128378668 0.033147203 8.67E-09 8.061811556 -0.452715942 LEAS(ph)IER ddPTM_HeLa_A485_30min_R1 3 LEASIER 7 0 Q9UBI6 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 1 0 LEAS(1)IER;LEAS(1)IER;LEAS(1)IER ;; 110.76 0.0029496 1649860000 1476310 1529740 1250640 1573460 1221100 1759280 2046520 2091300 1235470 3051510 TRUE FALSE FALSE 1804710.066 1708629.786 1713303.779 1659414.136 1099522.996 1851393.18 1609264.283 1578405.396 1483417.497 2290824.716 0.787799282 0.745857932 0.747898243 0.724374119 0.479968192 0.808177582 0.702482504 0.689011859 0.64754736 1 21.12743564 -12.26020678 15.76549321 0.988311564 0.71936449 0 0.125117193 0 0 0 0.026999288 5.49E-13 12.26020678 -0.268947074 LEAS(ph)IER ddPTM_HeLa_A486_30min_R1 2 LEASIER 7 0 Q9UBI6 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 1 0 LEAS(1)IER;LEAS(1)IER ; 117.89 0.0022724 1314870000 933840 1099720 1063580 412620 1609680 1365080 1288800 1286850 1558560 1794200 TRUE FALSE FALSE 868382.6384 1012574.182 1475426.66 960600.2127 1407778.925 1196670.309 966328.6085 993862.3467 1693657.236 1344920.642 0.645675746 0.75288768 1.097036222 0.714243044 1.046737541 0.8897702 0.718502325 0.738974714 1.259299012 1 20.35908962 -4.535061767 24.26492641 0.911728072 0.67247864 0.235401952 0.169866109 193.2669233 384929.907 0.042032142 0.111398224 2.92E-05 4.535061767 -0.239249433 LEAS(ph)YSDS(ph)PPGEEDLLVHVAEGSK ddPTM_HeLa_A486_30min_R1 2 LEASYSDSPPGEEDLLVHVAEGSK 24 0 Q7Z3C6;C9JS65;C9JFV2;F2Z3I6;C9JX27;C9IYZ9;C9JKV7;C9JDK4;C9JXG2;Q7Z3C6-3 Q7Z3C6 ATG9A Autophagy-related protein 9A 2 0 LEAS(0.9)Y(0.028)S(0.091)DS(0.981)PPGEEDLLVHVAEGSK;LEAS(0.989)Y(0.002)S(0.011)DS(0.999)PPGEEDLLVHVAEGSK ; 124.79 5.57E-06 60044000 86155 87575 55271 37679.2 91863 91257 109082 104410 74522 109686 TRUE FALSE FALSE 80115.9794 80635.23806 76673.41141 87719.0818 80340.68595 79998.63917 81788.52985 80638.12225 80981.62696 82219.91166 0.974410916 0.980726401 0.932540669 1.066883678 0.97714391 0.972983765 0.994753317 0.98076148 0.984939357 1 16.3272002 LEAS(ph)YSDSPPGEEDLLVHVAEGSK ddPTM_HeLa_A485_30min_R1 4 LEASYSDSPPGEEDLLVHVAEGSK 24 0 Q7Z3C6;C9JS65;C9JFV2;F2Z3I6;C9JX27;C9IYZ9;C9JKV7;C9JDK4;C9JXG2;Q7Z3C6-3 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 LEAS(0.959)YS(0.04)DS(0.001)PPGEEDLLVHVAEGSK;LEAS(0.976)YS(0.022)DS(0.001)PPGEEDLLVHVAEGSK;LEAS(0.89)YS(0.095)DS(0.015)PPGEEDLLVHVAEGSK;LEAS(0.992)YS(0.008)DSPPGEEDLLVHVAEGSK ;;; 190.93 6.00E-21 657100000 312066 272670 239078 370784 348815 296104 423908 423439 282774 552749 TRUE FALSE FALSE 381484.0051 304556.3846 327522.9011 391038.991 314085.7538 311607.5476 333336.5928 319589.9213 339524.148 414958.8469 0.919329731 0.733943587 0.789290079 0.942356077 0.7569082 0.750936026 0.803300364 0.770172569 0.818211614 1 18.66260874 -8.053847127 21.21596876 1.000000001 0.805119638 0.428195219 0.066090245 2462.543827 970251.4342 0.062998624 0.016266175 8.83E-09 8.053847127 -0.194880362 LEAS(ph)YSDSPPGEEDLLVHVAEGSK ddPTM_HeLa_A486_30min_R1 5 LEASYSDSPPGEEDLLVHVAEGSK 24 0 Q7Z3C6;C9JS65;C9JFV2;F2Z3I6;C9JX27;C9IYZ9;C9JKV7;C9JDK4;C9JXG2;Q7Z3C6-3 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 LEAS(0.96)YS(0.04)DSPPGEEDLLVHVAEGSK;LEAS(0.999)YS(0.001)DSPPGEEDLLVHVAEGSK;LEAS(0.999)YS(0.001)DSPPGEEDLLVHVAEGSK;LEAS(0.98)YS(0.02)DSPPGEEDLLVHVAEGSK;LEAS(0.352)Y(0.012)S(0.329)DS(0.307)PPGEEDLLVHVAEGSK ;;;; 239.21 5.69E-49 734247000 524382 539986 358834 192307 559379 540000 625642 618997 466649 670283 TRUE FALSE FALSE 487625.5297 497195.5428 497784.1347 447700.4147 489216.4698 473380.2903 469099.7542 478064.8957 507098.511 502439.774 0.970515383 0.989562468 0.990733936 0.891052894 0.973681813 0.94216325 0.933643749 0.951486965 1.00927223 1 18.93859115 -7.76063852 24.99995962 1.004636135 0.954978646 0.331698173 0.027976372 24.80661412 774581.8176 0.022463788 0.007366992 1.74E-08 7.76063852 -0.049657489 LEASDCDHQQNS(ph)PTLERPGR ddPTM_HeLa_A485_30min_R1 2 LEASDCDHQQNSPTLERPGR 20 1 B1AN62;Q9HAN9 B1AN62 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 1 0 LEASDCDHQQNS(0.999)PT(0.001)LERPGR;LEASDCDHQQNS(0.997)PT(0.003)LERPGR ; 261.06 5.45E-59 1707240000 482300 564350 648240 536260 760590 613610 703510 736380 633080 726000 TRUE FALSE FALSE 589585.9711 630345.8233 888050.9515 565554.5259 684862.989 645737.6708 553199.3414 555781.6504 760133.349 545021.561 1.081766325 1.156552086 1.629386826 1.037673674 1.256579625 1.184792891 1.015004508 1.019742502 1.394684914 1 19.05595378 -6.529993782 23.14733441 1.107702489 1.237543055 0.093782654 0.18302083 179.0198068 582386.7873 0.069654654 0.054117034 2.95E-07 6.529993782 0.129840565 LEASDCDHQQNS(ph)PTLERPGR ddPTM_HeLa_A486_30min_R1 2 LEASDCDHQQNSPTLERPGR 20 1 B1AN62;Q9HAN9 B1AN62 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 1 0 LEASDCDHQQNS(0.986)PT(0.014)LERPGR;LEASDCDHQQNS(0.999)PT(0.001)LERPGR ; 179.5 3.61E-19 877980000 258870 389200 314130 79845 403710 329930 374130 394240 350560 354840 TRUE FALSE FALSE 240724.5498 358358.3746 435769.5487 185883.1951 353072.9274 289226.5911 280518.7169 304480.1582 380946.8231 265985.7544 0.905027979 1.347284088 1.638319126 0.698846431 1.327412922 1.087376246 1.054638123 1.144723554 1.432207616 1 18.02098945 -5.244345974 24.99970937 1.118740187 1.301917674 0.109388891 0.247129447 2018.251893 2951760.682 0.065914777 0.113817044 5.70E-06 5.244345974 0.183177486 LEASDCDHQQNS(ph)PTLERPGRK ddPTM_HeLa_A486_30min_R1 1 LEASDCDHQQNSPTLERPGRK 21 2 B1AN62;Q9HAN9 B1AN62 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 1 0 LEAS(0.008)DCDHQQNS(0.968)PT(0.024)LERPGRK 53.998 0.013901 214250000 44854 62106 42944 13409 49118 46479 59192 65416 47868 72523 TRUE FALSE FALSE 41709.96623 57184.49437 59573.06688 31216.82965 42957.16243 40744.89354 44381.53553 50522.20482 52017.23678 54362.76875 0.767252426 1.05190548 1.095843134 0.574231783 0.790194529 0.74949997 0.81639579 0.929353048 0.956854074 1 15.73033132 -9.678528598 10.03579591 1.00001499 0.858882778 0.076478676 0.146929417 0 0 0.150579142 0.036520806 2.10E-10 9.678528598 -0.141132212 LEAYQHLFYLLQTNPTYLAK ddPTM_HeLa_A485_30min_R1 2 LEAYQHLFYLLQTNPTYLAK 20 0 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 205.63 1.19E-23 37168000 66032 58742 60564 86104 82367 59873 81797 67612 58763 129381 FALSE FALSE TRUE 80720.59059 65611.36591 82969.14388 90807.64349 74166.25227 63007.8577 64320.40273 51030.05099 70556.19509 97128.69778 0.831068391 0.675509581 0.854218637 0.934920838 0.763587425 0.648704854 0.662218317 0.525385928 0.726419655 1 16.56761 -6.036960833 6.361770137 0.681883805 0.81960299 0.121394449 0.128298268 0.327841746 39.47489533 0.041159057 0.042226621 9.18E-07 6.036960833 0.137719184 LEAYQHLFYLLQTNPTYLAK ddPTM_HeLa_A486_30min_R1 2 LEAYQHLFYLLQTNPTYLAK 20 0 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 193.54 3.52E-23 41220000 40442 58265.9 43457.7 21161.4 58684.9 55251 63489.7 56458.5 53578.9 58264.8 FALSE FALSE TRUE 37607.22464 53648.69788 60285.68528 49264.80864 51324.09263 48434.69337 47603.90553 43604.13203 58223.16219 43674.91484 0.861071505 1.22836411 1.380327483 1.127988659 1.175138928 1.108981976 1.089959894 0.998379326 1.33310305 1 15.41451727 -6.280924955 7.18930005 1.104805127 1.169783732 0.021033416 0.148157353 0.740118914 189.8434566 0.051879754 0.047010982 5.24E-07 6.280924955 0.064978605 LEDAES(ph)SNPNLQSLLSTDALPSASK ddPTM_HeLa_A486_30min_R1 1 LEDAESSNPNLQSLLSTDALPSASK 25 0 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 LEDAES(0.518)S(0.448)NPNLQS(0.034)LLSTDALPSASK 84.942 0.0033461 46588000 121520 136730 53573 30755 77053 109050 110150 91944 92342 157030 TRUE FALSE FALSE 113002.0755 125895.0168 74317.90033 71599.19427 67388.29425 95596.51974 82589.30495 71010.35832 100346.2789 117708.6659 0.96001492 1.069547564 0.631371529 0.608274622 0.572500705 0.81214513 0.70164167 0.603272136 0.852496952 1 16.84486101 -4.759730374 24.99999972 0.701533649 1.014781325 0.438710252 0.130395771 34.42105281 503483.2674 0.032148818 0.076495702 1.74E-05 4.759730374 0.313247676 LEDAESS(ph)NPNLQSLLSTDALPSASK ddPTM_HeLa_A485_30min_R1 1 LEDAESSNPNLQSLLSTDALPSASK 25 0 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 LEDAES(0.172)S(0.819)NPNLQS(0.009)LLSTDALPSASK 114.79 0.00016489 59781000 84026 87676 54729 82411 62626 81191 96012 95978 66028 105390 TRUE FALSE FALSE 102717.2938 97928.94552 74975.53456 86912.90425 56390.73555 85442.03521 75498.25185 72439.24501 79279.21396 79118.21256 1.298276218 1.237754777 0.947639388 1.098519563 0.712740262 1.079928786 0.954246177 0.915582426 1.002034947 1 16.27172221 -4.716058503 4.417092372 0.959532379 1.283291447 0.595171185 0.10059922 0.125658049 5.177560878 0.02503292 0.068727663 1.92E-05 4.716058503 0.323759068 LEDAESS(ph)NPNLQSLLSTDALPSASK ddPTM_HeLa_A486_30min_R1 1 LEDAESSNPNLQSLLSTDALPSASK 25 0 Q9Y294 Q9Y294 ASF1A Histone chaperone ASF1A 1 0 LEDAES(0.141)S(0.858)NPNLQS(0.001)LLSTDALPSASK 153.1 1.63E-09 43666000 233330 237940 114780 70729 146850 203760 209080 192000 180830 278790 TRUE FALSE FALSE 216974.7719 219084.7678 159225.8899 164660.6864 128430.7037 178622.1629 156765.9726 148285.7913 196504.49 208979.1694 1.038260285 1.048356965 0.761922303 0.787928706 0.614562227 0.854736687 0.75015119 0.709572116 0.940306589 1 17.67299962 -4.759037829 24.98963882 0.784803215 1.043308733 0.447021412 0.105739497 46.86815417 487662.7624 0.025820346 0.061988608 1.74E-05 4.759037829 0.258505519 LEDFRDYR ddPTM_HeLa_A485_30min_R1 4 LEDFRDYR 8 1 K7EJH8;O43707;O43707-2;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;F6THM6;P12814-2;P12814;P12814-3;P12814-4;H9KV75 K7EJH8;O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 ;;; ;;; 90.657 0.0049386 1652550000 2774750 4899100 3999080 2212260 5467800 4942500 5450000 7094200 3820370 3381360 FALSE FALSE TRUE 3391983.565 5472007.128 5478506.108 2333110.162 4923406.633 5201281.657 4285562.978 5354336.327 4587083.216 2538449.181 1.336242455 2.155649665 2.158209882 0.919108477 1.939533267 2.048999718 1.6882603 2.109294275 1.807041579 1 21.27551595 LEDFRDYR ddPTM_HeLa_A486_30min_R1 3 LEDFRDYR 8 1 K7EJH8;O43707;O43707-2;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;F6THM6;P12814-2;P12814;P12814-3;P12814-4;H9KV75 K7EJH8;O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 ;; ;; 89.698 0.0051503 886470000 2448550 2386540 2256040 924160 3600700 2043510 2858390 3092030 1830180 2671880 FALSE FALSE TRUE 2276919.289 2197421.879 3129639.107 2151491.184 3149066.631 1791402.513 2143190.589 2388042.268 1988821.476 2002823.857 1.136854487 1.097161825 1.562613255 1.074228858 1.572313321 0.894438374 1.070084412 1.192337638 0.993008681 1 20.93360411 -6.285263589 24.99752501 1.044501849 1.281306685 0.347826042 0.176390541 990.8536302 1039648.748 0.060369694 0.053267993 5.18E-07 6.285263589 0.236804835 LEDFRDYRR ddPTM_HeLa_A485_30min_R1 1 LEDFRDYRR 9 2 K7EJH8;O43707;O43707-2;A0A494C1A0;P35609;P35609-2;Q08043;A0A087WSZ2;F6THM6;P12814-2;P12814;P12814-3;P12814-4;H9KV75 K7EJH8;O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 57.598 0.029936 683640000 313540 1049200 574630 131280 753680 1095500 1140900 2436900 432880 226370 FALSE FALSE TRUE 383285.8913 1171894.813 787209.5493 138451.494 678640.9729 1152858.686 897137.3947 1839246.454 519755.0454 169940.125 2.255417261 6.895927686 4.632275922 0.814707497 3.993412225 6.783911015 5.279138135 10.82290868 3.058459827 1 17.37466701 -6.199780756 7.48301376 5.993846834 3.775465198 0.060685345 2.821235086 0.627643242 67.91758215 0.912335138 0.910914663 6.31E-07 6.199780756 -2.218381636 LEDIFQQEFS(ph)TPSR ddPTM_HeLa_A486_30min_R1 1 LEDIFQQEFSTPSR 14 0 Q9H4L4;A0A087X0R7;J3QL36 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 LEDIFQQEFS(0.499)T(0.499)PS(0.002)R 68.83 0.011138 20869000 46916 63689 42929 22594 50509 52691 60544 62280 52207 60584 TRUE FALSE FALSE 43627.43067 58642.05169 59552.25848 52599.97384 44173.69024 46190.52014 45395.25083 48100.20356 56732.3448 45413.37206 0.960673667 1.291294811 1.311337515 1.158248583 0.972702273 1.017112759 0.999600971 1.059163884 1.249243168 1 15.47082954 -5.581654621 6.985591058 1.049179244 1.204107324 0.23868695 0.114138633 0.283295575 27.1243537 0.034253709 0.044427567 2.62E-06 5.581654621 0.15492808 LEDLDT(ph)CMMTPK ddPTM_HeLa_A486_30min_R1 1 LEDLDTCMMTPK 12 0 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 LEDLDT(0.5)CMMT(0.5)PK 74.326 0.0025879 0 129370 141890 81026 103570 143690 190340 222230 191850 103400 245950 TRUE FALSE FALSE 120301.8311 130646.1196 112401.4372 241116.1941 125667.0603 166857.786 166625.7035 148169.9431 112362.7953 184362.5191 0.652528679 0.708637093 0.609676184 1.307837381 0.681630198 0.905052647 0.903793809 0.803687993 0.609466587 1 17.49218586 LEDLDTCMMT(ph)PK ddPTM_HeLa_A485_30min_R1 3 LEDLDTCMMTPK 12 0 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK ;; 323.24 1.75E-60 1960430000 1656430 1218580 830380 2313530 1667190 1303840 2309080 1944560 995500 3004460 TRUE FALSE FALSE 2024897.139 1361082.331 1137572.117 2439912.286 1501198.71 1372107.046 1815726.195 1467653.611 1195287.719 2255503.415 0.897758401 0.603449466 0.504353977 1.081759517 0.665571464 0.608337384 0.80502037 0.650698909 0.529942766 1 21.10501804 LEDLDTCMMT(ph)PK ddPTM_HeLa_A486_30min_R1 6 LEDLDTCMMTPK 12 0 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK;LEDLDTCMMT(1)PK;LEDLDT(0.053)CMMT(0.947)PK ;;;;; 281.6 3.03E-40 2639659000 1555448 1757918 875333 1021852 1527283 1961893 2633566 2249890 1376045 2545210 TRUE FALSE FALSE 1446419.128 1618614.175 1214285.38 2378923.098 1335716.925 1719854.589 1974619.932 1737639.162 1495321.689 1907872.849 0.758131826 0.848386818 0.636460328 1.246898135 0.700107937 0.901451367 1.034985079 0.910773044 0.783763807 1 20.8635336 LEDNPSSGS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 LEDNPSSGSPPR 12 0 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 LEDNPSS(0.003)GS(0.997)PPR 183.28 6.81E-13 450810000 290770 298070 346090 292960 391520 308470 321020 342040 320860 374970 TRUE FALSE FALSE 355450.7834 332926.6936 474123.093 308963.663 352538.8941 324621.0122 252431.4545 258154.1537 385253.6589 281496.8798 1.262716601 1.182701186 1.684292534 1.097574024 1.252372297 1.153195774 0.896746901 0.91707643 1.368589446 1 18.10275941 -6.016736882 1.466145121 1.045646332 1.338187274 0.290105983 0.186737818 0.507420927 2.231472849 0.07720411 0.085145906 9.62E-07 6.016736882 0.292540942 LEDNPSSGS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 LEDNPSSGSPPR 12 0 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 LEDNPSSGS(1)PPR;LEDNPSSGS(1)PPR ; 236.42 1.60E-31 0 1029580 1210840 1049580 302980 1174290 1067440 1161710 1124180 962410 1067180 TRUE FALSE FALSE 957411.7588 1114888.629 1456005.485 705352.7518 1026999.598 935750.1057 871037.8707 868228.7547 1045832.474 799951.1818 1.196837733 1.393695833 1.820117924 0.881744746 1.283827841 1.169759014 1.088863784 1.085352174 1.307370371 1 19.60955243 -5.273436249 24.99323296 1.128273204 1.462565056 0.433276304 0.184883177 709.7846793 1478701.744 0.051405827 0.076916489 5.33E-06 5.273436249 0.334291852 LEDQLSEGRNS(ph)PEKAENKR ddPTM_HeLa_A486_30min_R1 1 LEDQLSEGRNSPEKAENKR 19 3 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 LEDQLSEGRNS(1)PEKAENKR 98.002 0.0018464 427770000 276920 225780 106180 137800 177660 290200 345930 349670 184300 451100 TRUE FALSE FALSE 257509.338 207888.3705 147295.7396 320805.364 155376.2262 254398.0745 259374.6551 270057.7742 200275.2724 338141.6238 0.761542856 0.614796747 0.435603692 0.948730773 0.459500444 0.75234179 0.767059234 0.798652858 0.592282222 1 18.36726809 -14 0.1985159 2.433701111 0.629284753 0.285278484 0.150646724 175.9246256 1.737952508 99.92400273 0.355366548 1.00E-14 14 -1.804416359 LEDS(ph)EVR ddPTM_HeLa_A485_30min_R1 3 LEDSEVR 7 0 Q8N163-2;Q8N163;G3V119;H0YB24;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 LEDS(1)EVR;LEDS(1)EVR;LEDS(1)EVR ;; 110.76 0.0025425 387980000 1320020 1476460 1148370 1269320 1281930 1265830 1475130 1442710 1034830 1523300 TRUE FALSE FALSE 1613653.895 1649119.154 1573199.851 1338659.738 1154296.548 1332106.901 1159956.425 1088883.11 1242510.889 1143569.344 1.411067814 1.442080589 1.37569257 1.170597782 1.009380458 1.164867621 1.014329766 0.952179346 1.086519934 1 20.12511242 -5.362761391 2.105415137 1.038882448 1.429376727 0.901170769 0.05510804 0.093062925 0.80700833 0.017478781 0.030887737 4.34E-06 5.362761391 0.390494279 LEDS(ph)EVR ddPTM_HeLa_A486_30min_R1 4 LEDSEVR 7 0 Q8N163-2;Q8N163;G3V119;H0YB24;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 LEDS(1)EVR;LEDS(1)EVR;LEDS(1)EVR;LEDS(1)EVR ;;; 113.74 0.0026664 1017470000 2775750 2763590 1581850 732190 1886580 2256860 2233590 2086490 2050130 3003270 TRUE FALSE FALSE 2581184.259 2544593.064 2194384.683 1704575.323 1649947.545 1978431.559 1674722.157 1611441.775 2227836.919 2251231.644 1.146565377 1.130311521 0.974748507 0.757174557 0.732908828 0.87882185 0.743913742 0.715804515 0.989608033 1 21.10228308 -4.965817365 2.924016412 0.814254911 1.140924328 0.60982488 0.097576844 0.153246046 2.659798565 0.026134099 0.060866415 1.08E-05 4.965817365 0.326669417 LEDT(ph)WAY(ph)CQDTRK ddPTM_HeLa_A485_30min_R1 3 LEDTWAYCQDTRK 13 1 U3KQR7;D6RBT2;Q6ZV65-2;Q6ZV65-1;Q6ZV65 U3KQR7 FAM47E Protein FAM47E 2 0 LEDT(0.852)WAY(0.797)CQDT(0.351)RK;LEDT(0.964)WAY(0.793)CQDT(0.242)RK;LEDT(0.872)WAY(0.725)CQDT(0.402)RK ;; 54.343 0.0074824 2297600000 1124930 895588 736887 743775 1413540 548669 1516850 926349 766314 3347440 TRUE FALSE FALSE 1375166.798 1000319.226 1009492.166 784405.5449 1272802.994 577396.4604 1192762.606 699160.4553 920106.1908 2512984.813 0.547224476 0.398060196 0.401710412 0.312140981 0.506490524 0.229765201 0.474639799 0.278219133 0.366140769 1 21.26097052 -10.53247089 3.932958645 1.008889776 0.386594139 0.786748256 0.095179478 346839234.3 206140580.1 29794713.55 0.022397389 2.93E-11 10.53247089 -0.622295637 LEDT(ph)WAY(ph)CQDTRK ddPTM_HeLa_A486_30min_R1 4 LEDTWAYCQDTRK 13 1 U3KQR7;D6RBT2;Q6ZV65-2;Q6ZV65-1;Q6ZV65 U3KQR7 FAM47E Protein FAM47E 2 0 LEDT(0.969)WAY(0.82)CQDT(0.211)RK;LEDT(0.934)WAY(0.784)CQDT(0.282)RK;LEDT(0.962)WAY(0.738)CQDT(0.3)RK;LEDT(0.984)WAY(0.832)CQDT(0.184)RK ;;; 55.232 0.027263 3289200000 2661830 1689050 867644 364210 1312576 1566340 2443280 2504220 1326170 3190130 TRUE FALSE FALSE 2475249.463 1555203.527 1203618.993 847899.2862 1147940.479 1373100.896 1831945.502 1934063.773 1441123.483 2391300.684 1.035105907 0.650358835 0.50333235 0.354576608 0.480048572 0.574206709 0.766087475 0.808791544 0.602652562 1 21.18936412 -6.776156819 6.90905824 0.779502208 0.580722678 0.196806125 0.18960371 0.275008163 57.80214732 0.081976862 0.057400271 1.67E-07 6.776156819 -0.19877953 LEDTAGDTGHSSLEAPRS(ph)PDTLAPVASER ddPTM_HeLa_A485_30min_R1 2 LEDTAGDTGHSSLEAPRSPDTLAPVASER 29 1 O43310;O43310-2 O43310 CTIF CBP80/20-dependent translation initiation factor 1 0 LEDTAGDTGHSS(0.005)LEAPRS(0.816)PDT(0.178)LAPVAS(0.001)ER;LEDTAGDTGHSSLEAPRS(1)PDTLAPVASER ; 264.97 9.41E-64 535140000 267882 593480 588050 95186 582570 277642 329843 265988 404930 239888 TRUE FALSE FALSE 327471.4267 662882.3234 805594.1658 100385.7702 524567.2853 292178.9058 259369.3485 200754.0259 486195.7368 180088.3364 1.818393313 3.680873157 4.473327823 0.557425162 2.9128332 1.622419928 1.440234019 1.11475307 2.699762497 1 17.45834522 -5.261412588 25 1.672188506 3.359865571 0.420167989 0.915185188 2.322152129 2165672.701 0.247967866 0.396410348 5.48E-06 5.261412588 1.687677066 LEDTAGDTGHSSLEAPRS(ph)PDTLAPVASER ddPTM_HeLa_A486_30min_R1 2 LEDTAGDTGHSSLEAPRSPDTLAPVASER 29 1 O43310;O43310-2 O43310 CTIF CBP80/20-dependent translation initiation factor 1 0 LEDTAGDTGHSSLEAPRS(1)PDTLAPVASER;LEDTAGDTGHSSLEAPRS(1)PDTLAPVASER ; 273.73 2.57E-77 342790000 247780 262350 279250 18679.8 279220 131752 162741 136046 263840 54743 TRUE FALSE FALSE 230411.9015 241560.4305 387383.0786 43487.51842 244197.624 115497.7778 122021.4805 105071.2957 286709.8636 41034.99648 5.615009657 5.886693097 9.440309779 1.059766593 5.950960032 2.814616491 2.973595491 2.560528931 6.986959625 1 15.32456721 -5.26303894 24.99607173 3.472457652 6.871272985 0.403024374 2.027057242 146.3800828 2287470.112 0.539820723 0.85089368 5.46E-06 5.26303894 3.398815334 LEDVKNS(ph)PTFK ddPTM_HeLa_A485_30min_R1 2 LEDVKNSPTFK 11 1 H0YC42;P55327-2;P55327;P55327-3 H0YC42 TPD52 Tumor protein D52 1 0 LEDVKNS(0.985)PT(0.015)FK;LEDVKNS(0.964)PT(0.036)FK ; 110.38 0.00015965 211520000 1291010 871910 465970 1919960 1124280 964960 1417550 1381530 679160 2228000 TRUE FALSE FALSE 1578190.721 973872.2899 638351.6936 2024842.553 1012342.736 1015483.813 1114678.862 1042707.601 815461.1824 1672600.603 0.943555035 0.582250352 0.381652196 1.210595374 0.60525073 0.60712869 0.666434569 0.623405013 0.487540887 1 20.67366156 LEDVKNS(ph)PTFK ddPTM_HeLa_A486_30min_R1 4 LEDVKNSPTFK 11 1 H0YC42;P55327-2;P55327;P55327-3 H0YC42 TPD52 Tumor protein D52 1 0 LEDVKNS(0.987)PT(0.013)FK;LEDVKNS(0.996)PT(0.004)FK;LEDVKNS(0.988)PT(0.012)FK;LEDVKNS(0.991)PT(0.009)FK ;;; 119.32 0.00010101 1830370000 4814090 3691500 1189570 1961620 2700170 4159740 5052530 4523910 2609210 6568400 TRUE FALSE FALSE 4476647.151 3398972.096 1650203.362 4566750.495 2361489.501 3646553.572 3788333.554 3493914.449 2835378.424 4923629.887 0.909216829 0.690338668 0.335159912 0.927517015 0.479623683 0.740623007 0.769418831 0.709621667 0.57587156 1 22.23129089 -6.449747194 24.99990883 0.741752245 0.659941567 0.048330455 0.192005871 556.5916436 190268.3328 0.06585926 0.058082387 3.55E-07 6.449747194 -0.081810678 LEDVSKPPAYAYPATPSSHPTS(ph)PPPAS(ph)PPPTPGITR ddPTM_HeLa_A485_30min_R1 1 LEDVSKPPAYAYPATPSSHPTSPPPASPPPTPGITR 36 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 2 0 LEDVSKPPAYAYPAT(0.016)PS(0.02)S(0.021)HPT(0.167)S(0.776)PPPAS(0.999)PPPTPGITR 111.86 0.00014983 249660000 80785 118370 110140 66515 149900 100570 130600 137240 126010 122300 TRUE FALSE FALSE 98755.34455 132212.3418 150885.3693 70148.54603 134975.4297 105835.6897 102696.2431 103581.6748 151299.0512 91812.86076 1.075615592 1.440019848 1.643401241 0.764038343 1.470114628 1.152732731 1.118538756 1.128182631 1.647906948 1 16.48640863 -5.205139877 24.99984844 1.196417288 1.391712511 0.111253986 0.261249428 683.2446533 303393.8164 0.068496367 0.118639123 6.24E-06 5.205139877 0.195295223 LEDVSKPPAYAYPATPSSHPTS(ph)PPPAS(ph)PPPTPGITR ddPTM_HeLa_A486_30min_R1 2 LEDVSKPPAYAYPATPSSHPTSPPPASPPPTPGITR 36 1 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 2 0 LEDVSKPPAYAYPAT(0.002)PS(0.012)S(0.012)HPT(0.475)S(0.502)PPPAS(0.919)PPPT(0.052)PGIT(0.026)R;LEDVSKPPAYAYPATPSSHPT(0.168)S(0.832)PPPAS(1)PPPTPGITR ; 133.77 4.05E-06 354129000 101570 102342 81256 10357.9 105415 79640 97391 90023 97842 57340 TRUE FALSE FALSE 94450.46751 94232.0472 112720.4993 24113.71466 92192.86774 69814.82652 73022.7417 69526.72809 106323.0233 42981.69078 2.197458169 2.192376463 2.62252362 0.561022943 2.144933484 1.624292234 1.698926691 1.617589416 2.473681733 1 15.39143462 LEEAFS(ph)R ddPTM_HeLa_A486_30min_R1 1 LEEAFSR 7 0 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 LEEAFS(1)R 74.255 0.017562 97422000 36747 28688 19798 41454 33165 37401 40620 42978 22349 53816 TRUE FALSE FALSE 34171.22506 26414.6584 27464.31581 96507.00697 29005.13645 32786.84489 30456.44637 33192.8476 24286.22931 40340.12332 0.847077853 0.654798653 0.680818836 2.392332969 0.719014571 0.812760155 0.754991405 0.822824644 0.602036566 1 15.29992787 LEEAGGS(ph)PHPPGGR ddPTM_HeLa_A485_30min_R1 1 LEEAGGSPHPPGGR 14 0 E9PPP7 E9PPP7 MROH6 1 0 LEEAGGS(1)PHPPGGR 77.597 0.0062899 327580000 210560 262610 307370 264530 396850 265350 325980 316510 280390 315460 TRUE FALSE FALSE 257398.3456 293319.9551 421078.9537 278980.6041 357338.2206 279243.3157 256331.71 238885.4262 336661.7011 236821.6276 1.086886988 1.238569121 1.778042647 1.178019959 1.508891836 1.179129282 1.082383026 1.00871457 1.421583428 1 17.85344131 -6.437110497 6.75947228 1.129039166 1.36419691 0.218352505 0.209408232 0.39482244 26.34871977 0.074088427 0.064960666 3.66E-07 6.437110497 0.235157744 LEEDRQS(ph)LDLSSEWWDDKLHAR ddPTM_HeLa_A486_30min_R1 1 LEEDRQSLDLSSEWWDDKLHAR 22 2 E9PJF5;G5E9I4;Q9HCU9;H0YCF7 E9PJF5 BRMS1 Breast cancer metastasis-suppressor 1 1 0 LEEDRQS(1)LDLSSEWWDDKLHAR 120.13 1.29E-05 207130000 46018 43874 30680 24658 51287 58595 63860 65772 42376 71618 TRUE FALSE FALSE 42792.37584 40397.26445 42560.11764 57405.07015 44854.10623 51366.14465 47881.55256 50797.15139 46049.1858 53684.38665 0.797110268 0.752495595 0.792783904 1.069306622 0.835514924 0.956817203 0.891908347 0.946218343 0.857776137 1 15.71221494 -5.037405226 23.20197069 0.929429845 0.774262102 0.548466054 0.064757648 159.5009167 98936.29278 0.016266434 0.02818968 9.17E-06 5.037405226 -0.155167744 LEEEPSAS(ph)SPQYACDFNLFLEDSADNR ddPTM_HeLa_A485_30min_R1 1 LEEEPSASSPQYACDFNLFLEDSADNR 27 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 LEEEPS(0.003)AS(0.533)S(0.448)PQY(0.017)ACDFNLFLEDSADNR 124.28 6.98E-06 20076000 23554 22369 22075 31800 32488 17884 27286 23196 22956 38724 TRUE FALSE FALSE 28793.50604 24984.85997 30241.46112 33537.15348 29253.38065 18820.37859 21456.12319 17507.14463 27563.05864 29070.81946 0.990460763 0.85944808 1.040268616 1.15363633 1.006279878 0.647397594 0.738063928 0.602223981 0.948134905 1 14.82728412 -6.242865864 23.47209751 0.759234334 1.011313061 0.406079423 0.132618587 338.0615201 427221.5002 0.043536739 0.043442139 5.72E-07 6.242865864 0.252078727 LEEEPSAS(ph)SPQYACDFNLFLEDSADNR ddPTM_HeLa_A486_30min_R1 1 LEEEPSASSPQYACDFNLFLEDSADNR 27 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 LEEEPS(0.079)AS(0.485)S(0.427)PQY(0.01)ACDFNLFLEDSADNR 92.275 0.0022684 18522000 9641.4 16009 9270.4 6601.2 12617 11949 12266 14485 12581 13017 TRUE FALSE FALSE 8965.587648 14740.38854 12860.14715 15367.92721 11034.45821 10474.85387 9196.917063 11187.08171 13671.53121 9757.458474 0.918844561 1.510679095 1.317981233 1.574992837 1.130874217 1.073522772 0.942552519 1.146515943 1.4011365 1 13.2522897 -5.959409685 24.984996 1.11025814 1.343876589 0.220468198 0.197513787 217.6801673 133990.0701 0.060680726 0.068805399 1.10E-06 5.959409685 0.233618449 LEEEPSASS(ph)PQYACDFNLFLEDSADNR ddPTM_HeLa_A486_30min_R1 1 LEEEPSASSPQYACDFNLFLEDSADNR 27 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 LEEEPS(0.017)AS(0.11)S(0.853)PQY(0.019)ACDFNLFLEDSADNR 116.72 0.00014231 28393000 15003 18930 15844 7563 18296 19328 19408 20108 15349 16541 TRUE FALSE FALSE 13951.36718 17429.91786 21979.22112 17607.04621 16001.14508 16943.50787 14551.91312 15529.84735 16679.46368 12399.02594 1.125198644 1.405748963 1.77265708 1.42003463 1.2905163 1.36651927 1.173633574 1.252505433 1.345223711 1 13.59793917 -6.279042577 1.401492315 1.215487776 1.444388521 0.246436839 0.171876361 0.64883259 2.565939636 0.083944446 0.074767617 5.26E-07 6.279042577 0.228900745 LEEFS(ph)PR ddPTM_HeLa_A486_30min_R1 2 LEEFSPR 7 0 Q9UGU0-2;Q9UGU0;I3L1M7 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LEEFS(1)PR;LEEFS(1)PR ; 87.308 0.0074319 152421000 262690 290130 242320 81861 341160 247520 273800 279200 226590 257190 TRUE FALSE FALSE 244276.7875 267139.0422 336152.7936 190576.545 298368.5316 216983.499 205292.344 215632.2549 246231.0036 192787.95 1.267074978 1.385662549 1.743640065 0.98852934 1.547651353 1.12550343 1.06486087 1.118494465 1.277211588 1 17.55665535 -6.290819038 22.29785423 1.12134767 1.384194774 0.329668386 0.191943822 231.7100614 175856.0326 0.065887244 0.058124633 5.12E-07 6.290819038 0.262847103 LEEPPELNRQS(ph)PNPR ddPTM_HeLa_A485_30min_R1 9 LEEPPELNRQSPNPR 15 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR ;;;;;;;; 221.79 6.44E-34 94826330000 11976070 16556739 16363639 13345380 19410892 16230707 18712719 20624433 15061226 18159504 TRUE FALSE FALSE 14640105.45 18492905.6 22417230.01 14074404.32 17478275.44 17080521.72 14714593.72 15566258.47 18083875.91 13632673.85 1.073898313 1.356513462 1.644375143 1.032402335 1.282087111 1.252910611 1.079362264 1.141834583 1.326509832 1 23.70056522 -5.298617894 24.99983635 1.170896471 1.35808799 0.237655694 0.162370332 844.580271 567916.8036 0.045690747 0.067772595 5.03E-06 5.298617894 0.187191518 LEEPPELNRQS(ph)PNPR ddPTM_HeLa_A486_30min_R1 9 LEEPPELNRQSPNPR 15 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR ;;;;;;;; 199.41 1.43E-25 65936370000 9982760 11162753 9298996 3340608 12604590 9508190 10912480 11479510 9286855 11332090 TRUE FALSE FALSE 9283020.075 10278175.8 12899816.29 7777104.249 11023604.79 8335166.19 8182062.084 8865876.169 10091847.07 8494460.904 1.092832162 1.20998565 1.518615064 0.915550067 1.297740364 0.981247225 0.963223232 1.043724407 1.188050329 1 23.01809096 -5.281146165 24.99015611 1.060605931 1.267428491 0.321687921 0.144959854 975.4414253 1236954.226 0.040710972 0.060485164 5.23E-06 5.281146165 0.20682256 LEEPTPAPSTSYS(ph)PQADSLR ddPTM_HeLa_A485_30min_R1 2 LEEPTPAPSTSYSPQADSLR 20 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LEEPTPAPSTSYS(1)PQADSLR;LEEPTPAPSTSYS(1)PQADSLR ; 264.84 5.67E-59 424770000 232243 299669 305641 263152 404250 300360 317554 342900 315270 366050 TRUE FALSE FALSE 283904.6541 334712.6828 418710.3247 277527.3274 364001.4506 316086.3852 249705.9937 258803.2374 378541.7972 274800.4717 1.033130156 1.218020773 1.523688523 1.009923039 1.324602714 1.150239602 0.908681096 0.941786001 1.377515093 1 18.06802495 -6.527614681 24.59543902 1.048903778 1.227728523 0.156248232 0.179970142 195.5581217 1015585.98 0.067816075 0.05273633 2.97E-07 6.527614681 0.178824744 LEEPTPAPSTSYS(ph)PQADSLR ddPTM_HeLa_A486_30min_R1 2 LEEPTPAPSTSYSPQADSLR 20 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LEEPTPAPSTS(0.061)YS(0.939)PQADSLR;LEEPTPAPSTSYS(1)PQADSLR ; 295.53 8.23E-87 252420000 151084 208247 184567 61922 247040 189669 206930 227580 175439 175681 TRUE FALSE FALSE 140493.7918 191744.7493 256036.2853 144157.5454 216053.9396 166269.5672 155153.9253 175765.002 190646.1938 131689.3341 1.066857789 1.456038567 1.944244665 1.094678976 1.640633549 1.262589475 1.17818141 1.334694288 1.447696543 1 17.00677898 -6.437143311 24.90776474 1.261225969 1.45027806 0.123246319 0.25865759 181.0439476 52593.26832 0.090199552 0.079548502 3.65E-07 6.437143311 0.189052091 LEEVKPVVEVHHQS(ph)EQETSVR ddPTM_HeLa_A485_30min_R1 1 LEEVKPVVEVHHQSEQETSVR 21 1 Q5T0V7;Q03001-11 Q5T0V7 DST Dystonin 1 0 LEEVKPVVEVHHQS(1)EQETSVR 229.04 3.35E-36 438660000 217490 201750 129640 238390 158910 179510 219550 310720 186550 435410 TRUE FALSE FALSE 265869.9002 225342.9075 177599.2308 251412.6421 143088.3624 188908.866 172641.3489 234515.4328 223988.8739 326870.3001 0.813380414 0.68939548 0.543332419 0.769151073 0.437752718 0.577932183 0.528164685 0.717457147 0.685253061 1 18.31835877 -8.36908825 1.357855446 0.999265543 0.622934665 0.498634359 0.109772812 1.181650459 3.278913363 0.1064131 0.03155909 4.27E-09 8.36908825 -0.376330879 LEEVKT(ph)PK ddPTM_HeLa_A486_30min_R1 1 LEEVKTPK 8 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 LEEVKT(1)PK 69.979 0.007831 0 101040 104590 42641 82345 86989 139450 193640 151370 77530 234150 TRUE FALSE FALSE 93957.61777 96301.90749 59152.73717 191703.3215 76078.02848 122246.0768 145189.2239 116906.3554 84250.36282 175517.3159 0.535318224 0.548674682 0.337019381 1.092218853 0.433450273 0.696490122 0.827207407 0.666067361 0.480011686 1 17.42125384 -14 0.147586635 2.19646826 0.521462445 0.223234548 0.206258481 216.3147472 1.90841825 77.33499196 1.086223322 1.00E-14 14 -1.675005815 LEFQQQLGEAPSDAS(ph)P ddPTM_HeLa_A485_30min_R1 4 LEFQQQLGEAPSDASP 16 0 Q9BUW7 Q9BUW7 C9orf16 UPF0184 protein C9orf16 1 0 LEFQQQLGEAPS(0.049)DAS(0.951)P;LEFQQQLGEAPS(0.001)DAS(0.999)P;LEFQQQLGEAPS(0.001)DAS(0.999)P;LEFQQQLGEAPS(0.008)DAS(0.992)P ;;; 173.03 2.43E-12 213774000 312818 398642 375248 332227 484252 373264 460307 473877 373495 457419 TRUE FALSE FALSE 382403.2849 445259.7142 514067.8506 350375.7198 436038.1706 392807.5259 361958.6491 357657.9227 448452.0206 343392.8615 1.113602896 1.296648137 1.497025443 1.020334896 1.269793928 1.143901257 1.054065735 1.04154152 1.305944505 1 18.38950052 -5.280988899 24.9993472 1.12566867 1.3018478 0.296564504 0.128939367 1020.901845 1305496.229 0.036084832 0.053606954 5.24E-06 5.280988899 0.176179129 LEFQQQLGEAPSDAS(ph)P ddPTM_HeLa_A486_30min_R1 2 LEFQQQLGEAPSDASP 16 0 Q9BUW7 Q9BUW7 C9orf16 UPF0184 protein C9orf16 1 0 LEFQQQLGEAPS(0.003)DAS(0.997)P;LEFQQQLGEAPS(0.001)DAS(0.999)P ; 195.23 1.30E-18 141126000 232238 280450 218045 85990 290190 237470 259630 280450 226940 267740 TRUE FALSE FALSE 215959.3155 258226.1206 302477.8634 200189.0657 253791.6643 208173.3658 194667.8279 216597.6572 246611.3419 200696.1613 1.076051052 1.286652016 1.507143243 0.997473317 1.264556644 1.03725634 0.969962886 1.079231689 1.228779566 1 17.6146535 -5.287321145 24.99902179 1.08678287 1.289619183 0.338555305 0.132803526 858.4010287 829121.8083 0.037876061 0.056200941 5.16E-06 5.287321145 0.202836313 KVST(ph)SGQIR ddPTM_HeLa_A486_30min_R1 2 KVSTSGQIR 9 1 Q86XP1-2;Q86XP1;A0A087WZ02;C9JY42;A0A096LNI6;Q16760 Q86XP1-2 DGKH;DGKD Diacylglycerol kinase eta;Diacylglycerol kinase delta 1 0 KVS(0.29)T(0.63)S(0.08)GQIR;KVS(0.024)T(0.914)S(0.062)GQIR ; 132.56 0.00018895 929570000 1589940 1396800 784290 404170 1010760 980280 1111040 1160110 746190 964090 TRUE FALSE FALSE 1478493.416 1286112.481 1087988.092 940928.1856 883981.0558 859343.0204 833046.0406 895978.278 810870.35 722675.5888 2.045860465 1.77965397 1.50549999 1.302006322 1.223205916 1.189113115 1.152724754 1.239807034 1.122039214 1 19.46298864 -4.433274422 0.734517506 1.140089273 2.491174927 0.969152702 0.054487214 0.342315357 0.166199745 0.022132594 0.368124576 3.69E-05 4.433274422 1.351085654 up LEGDS(ph)DVDS(ph)ELEDRVDGVK ddPTM_HeLa_A485_30min_R1 1 LEGDSDVDSELEDRVDGVK 19 1 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 LEGDS(1)DVDS(1)ELEDRVDGVK 119.32 2.24E-05 449340000 286480 230220 127110 391410 272020 272370 386910 328560 211610 542560 TRUE FALSE FALSE 350206.4877 257142.2264 174133.2785 412791.7372 244936.7337 286630.872 304243.5177 247980.1448 254078.186 407309.7771 0.859803784 0.631318571 0.427520497 1.013458946 0.601352453 0.703717142 0.746958543 0.608824435 0.623795942 1 18.63576692 -10.14103996 5.020705438 1.000015203 0.687747104 0.273744368 0.151042174 2.48E-05 4.25E-06 0.14137546 0.034286917 7.23E-11 10.14103996 -0.312268099 LEGDS(ph)DVDS(ph)ELEDRVDGVK ddPTM_HeLa_A486_30min_R1 2 LEGDSDVDSELEDRVDGVK 19 1 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 LEGDS(1)DVDS(1)ELEDRVDGVK;LEGDS(1)DVDS(1)ELEDRVDGVK ; 92.8 0.00056632 370530000 512890 510140 265250 242412 433670 544370 689380 589880 421980 730120 TRUE FALSE FALSE 476939.0596 469714.6485 367961.9036 564347.3868 379275.0648 477211.1641 516889.8325 455577.201 458557.5662 547293.1997 0.871450732 0.858250475 0.672330487 1.03116097 0.693001603 0.871947915 0.944447753 0.832418896 0.837864542 1 19.06195441 -14 0.225312267 1.810157858 0.827028928 0.179530323 0.099492259 269.4293375 2.69804179 99.24174014 0.173817619 1.00E-14 14 -0.98312893 LEGDS(ph)DVDSELEDRVDGVK ddPTM_HeLa_A485_30min_R1 1 LEGDSDVDSELEDRVDGVK 19 1 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 LEGDS(1)DVDSELEDRVDGVK 159.74 1.38E-10 99641000 76352 63622 55308 128210 89734 74549 119560 89601 59661 154740 TRUE FALSE FALSE 93336.23899 71062.03946 75768.73076 135213.7877 80799.76788 78452.27037 94015.02928 67626.21426 71634.41546 116166.1658 0.803471806 0.611727511 0.652244397 1.163968758 0.695553368 0.675345268 0.809315076 0.582150696 0.616654729 1 16.82583041 LEGDS(ph)DVDSELEDRVDGVK ddPTM_HeLa_A486_30min_R1 2 LEGDSDVDSELEDRVDGVK 19 1 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 LEGDS(1)DVDSELEDRVDGVK;LEGDS(1)DVDSELEDRVDGVK ; 255.99 2.66E-58 175192000 243990 250060 106481 113958 194350 273790 330520 295930 191421 373510 TRUE FALSE FALSE 226887.561 230244.3349 147713.2949 265299.9831 169972.8108 240012.5735 247820.4001 228553.1991 208013.5264 279980.6649 0.810368677 0.822357983 0.527583913 0.947565373 0.607087675 0.857246959 0.88513398 0.816317795 0.742956756 1 18.09496767 LEGDSDDLLEDS(ph)DSEEHSR ddPTM_HeLa_A485_30min_R1 4 LEGDSDDLLEDSDSEEHSR 19 0 A0A3B3IUB9;Q9NR09 A0A3B3IUB9 BIRC6 Baculoviral IAP repeat-containing protein 6 1 0 LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(0.996)DS(0.004)EEHSR ;;; 312.74 1.11E-89 8440000000 3614500 3971360 3660520 3791040 4301390 3469240 4413220 4186520 3512130 4982860 TRUE FALSE FALSE 4418533.055 4435776.006 5014698.675 3998134.916 3873128.509 3650884.042 3470299.494 3159769.406 4216982.276 3740724.705 1.181197068 1.18580659 1.340568759 1.068812926 1.035395228 0.975983086 0.927707802 0.844694452 1.127316926 1 21.83488637 -5.574899776 2.489045053 0.970517006 1.230192941 0.647783564 0.081417064 0.170311189 2.13431946 0.02552282 0.036615117 2.66E-06 5.574899776 0.259675935 LEGDSDDLLEDS(ph)DSEEHSR ddPTM_HeLa_A486_30min_R1 4 LEGDSDDLLEDSDSEEHSR 19 0 A0A3B3IUB9;Q9NR09 A0A3B3IUB9 BIRC6 Baculoviral IAP repeat-containing protein 6 1 0 LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(1)DSEEHSR;LEGDSDDLLEDS(1)DSEEHSR ;;; 338.76 2.31E-102 8571290000 3945840 4421100 3173630 1129370 3980120 4098190 4402610 4278610 3755560 4218980 TRUE FALSE FALSE 3669256.992 4070755.935 4402544.529 2629230.435 3480896.236 3592596.985 3301030.412 3304463.904 4081094.965 3162519.947 1.160232047 1.287187434 1.392100161 0.831371969 1.10067171 1.135991882 1.043797499 1.044883182 1.290456672 1 21.59264315 -5.237387599 24.99989896 1.06945259 1.280574628 0.404309616 0.119990363 811.1684881 843143.6443 0.032233645 0.055793754 5.79E-06 5.237387599 0.211122038 LEGELQAPDLELS(ph)LPAIHVEGLDIK ddPTM_HeLa_A485_30min_R1 2 LEGELQAPDLELSLPAIHVEGLDIK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LEGELQAPDLELS(1)LPAIHVEGLDIK;LEGELQAPDLELS(1)LPAIHVEGLDIK ; 162.38 6.84E-14 176419000 88925 66975 48282 83917 100855 80135 120148 132337 66498 151092 TRUE FALSE FALSE 108706.0595 74807.14364 66143.52098 88501.17322 90813.52208 84330.74469 94477.39828 99881.14325 79843.53864 113427.545 0.958374436 0.659514791 0.583134555 0.780244104 0.800630235 0.743476769 0.832931703 0.880572203 0.70391666 1 16.79141151 -11.14327822 0.236526851 1.28717418 0.729885348 0.298364805 0.10324221 42.29888997 1.40379309 6.744442974 0.187972797 7.19E-12 11.14327822 -0.557288832 LEGELQAPDLELS(ph)LPAIHVEGLDIK ddPTM_HeLa_A486_30min_R1 2 LEGELQAPDLELSLPAIHVEGLDIK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LEGELQAPDLELS(1)LPAIHVEGLDIK;LEGELQAPDLELS(1)LPAIHVEGLDIK ; 214 1.69E-29 229210000 123939 144858 89039 86439 144252 159624 203844 195412 112907 192112 TRUE FALSE FALSE 115251.5161 133378.9245 123517.2853 201234.3604 126158.5691 139931.2138 152840.0752 150920.9534 122693.8697 144005.9048 0.800324933 0.926204552 0.857723755 1.397403535 0.876065251 0.971704695 1.06134589 1.048019202 0.852005825 1 17.13576844 LEGGRQDS(ph)EDEEER ddPTM_HeLa_A485_30min_R1 4 LEGGRQDSEDEEER 14 1 A0A3B3ISZ4;Q9BYE7-3;Q9BYE7 A0A3B3ISZ4 PCGF6 Polycomb group RING finger protein 6 1 0 LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER ;;; 250.6 5.60E-35 2474800000 1018150 1397430 1464050 1203860 1514730 1265690 1485970 1612050 1263630 1383290 TRUE FALSE FALSE 1244633.955 1560847.282 2005663.019 1269623.823 1363918.163 1331959.571 1168480.37 1216692.21 1517228.95 1038461.261 1.198536722 1.503038526 1.931379721 1.222601046 1.313403027 1.282628079 1.125203621 1.171629849 1.461035676 1 19.98601597 LEGGRQDS(ph)EDEEER ddPTM_HeLa_A486_30min_R1 5 LEGGRQDSEDEEER 14 1 A0A3B3ISZ4;Q9BYE7-3;Q9BYE7 A0A3B3ISZ4 PCGF6 Polycomb group RING finger protein 6 1 0 LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER;LEGGRQDS(1)EDEEER ;;;; 218.14 6.04E-28 3439530000 1447435 1772297 1457359 598266 1847832 1571706 1826730 1843526 1586994 1760530 TRUE FALSE FALSE 1345977.281 1631853.731 2021687.434 1392793.483 1616059.68 1377804.894 1369662.833 1423795.374 1724555.918 1319681.829 1.0199256 1.236550883 1.531950649 1.05540097 1.224582808 1.044043241 1.037873526 1.078892914 1.306796744 1 20.33175871 LEGKKS(ph)PLSSILFSALDSDTR ddPTM_HeLa_A486_30min_R1 2 LEGKKSPLSSILFSALDSDTR 21 2 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A0G2JQF4;A0A1W2PRR3;I3L233;A0A1W2PPV8 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 LEGKKS(0.997)PLS(0.003)SILFSALDSDTR;LEGKKS(0.985)PLS(0.013)S(0.003)ILFSALDSDTR ; 204.05 6.55E-27 155259000 100650 86129 49238 63069 102082 98764 149549 145884 73275 126434 TRUE FALSE FALSE 93594.95476 79303.82436 68304.27224 146827.8193 89277.92368 86579.50184 112130.2584 112669.3978 79626.536 94774.10345 0.987558324 0.836766812 0.720706076 1.549239866 0.942007578 0.913535435 1.18313183 1.188820508 0.840171873 1 16.53220528 LEGKKSPLS(ph)SILFSALDSDTR ddPTM_HeLa_A485_30min_R1 1 LEGKKSPLSSILFSALDSDTR 21 2 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A0G2JQF4;A0A1W2PRR3;I3L233;A0A1W2PPV8 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 LEGKKS(0.411)PLS(0.51)S(0.076)ILFS(0.003)ALDSDTR 74.274 0.0034043 22389000 20897 27272 12326 26626 37389 31159 54635 55914 25405 47573 TRUE FALSE FALSE 25545.46556 30461.22317 16885.90033 28080.51096 33666.41988 32790.43706 42961.78592 42201.00383 30503.55047 35713.92662 0.715280228 0.852922825 0.472809963 0.786262213 0.942669235 0.918141469 1.202942101 1.181639988 0.854108001 1 15.12419914 -5.915695875 1.773129833 1.058393588 0.69112699 0.578967739 0.132436247 0.250090151 1.609798257 0.050061431 0.058827226 1.21E-06 5.915695875 -0.367266598 LEGLTQDLR ddPTM_HeLa_A486_30min_R1 2 LEGLTQDLR 9 0 Q01094 Q01094 E2F1 Transcription factor E2F1 0 0 ; ; 86.953 0.012198 0 94344 108498 99116 36620 115461 103395 114740 113504 87783 106033 FALSE FALSE TRUE 87730.97279 99900.22334 137496.3696 85253.21067 100978.8047 90639.17614 86030.8384 87661.61697 95392.10112 79481.64664 1.10378907 1.25689675 1.729913451 1.072615054 1.270466944 1.140378691 1.082398793 1.102916468 1.200177716 1 16.27833414 LEGPVS(ph)PDVEPGKEETEESK ddPTM_HeLa_A485_30min_R1 3 LEGPVSPDVEPGKEETEESK 20 1 O14686;O14686-3;A0A3B3ISC8 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK ;; 233.91 2.87E-38 657200000 1214740 732430 499970 2319700 1083630 1092320 1910520 1581160 872750 3055160 TRUE FALSE FALSE 1484954.722 818081.3172 684929.7085 2446419.337 975739.9923 1149512.186 1502321.794 1193378.031 1047902.92 2293564.838 0.647443969 0.356685498 0.298631064 1.066644944 0.425425075 0.501190185 0.655016056 0.520315803 0.456888291 1 21.12916026 -10.65904329 2.863334668 1.047796517 0.547312684 0.307218282 0.203814336 66936904.25 64732045.8 23526965.06 0.056468049 2.19E-11 10.65904329 -0.500483833 LEGPVS(ph)PDVEPGKEETEESK ddPTM_HeLa_A486_30min_R1 4 LEGPVSPDVEPGKEETEESK 20 1 O14686;O14686-3;A0A3B3ISC8 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK ;;; 214.17 1.25E-27 1031720000 1848080 1655710 574100 1326810 1348360 2356370 3124430 2660680 1277080 3929310 TRUE FALSE FALSE 1718539.135 1524505.51 796406.8949 3088880.733 1179236.116 2065665.027 2342664.567 2054901.246 1387778.323 2945385.2 0.583468381 0.517591217 0.270391423 1.048718766 0.400367366 0.701322539 0.795367807 0.697668083 0.4711704 1 21.49002489 -14 0.127688295 2.196817597 0.457361132 0.239134046 0.20786053 217.2929944 1.759211832 67.67231044 1.6436496 1.00E-14 14 -1.739456465 LEGPVS(ph)PDVEPGKEETEESKK ddPTM_HeLa_A485_30min_R1 1 LEGPVSPDVEPGKEETEESKK 21 2 O14686;O14686-3;A0A3B3ISC8 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LEGPVS(0.999)PDVEPGKEETEESKK 48.286 0.019084 218610000 177980 87259 49922 363320 122900 124450 281260 250730 83197 462490 TRUE FALSE FALSE 217571.037 97463.181 68390.22523 383167.2516 110663.6445 130966.0096 221166.5033 189238.0744 99893.87477 347199.7545 0.626645135 0.280712125 0.196976594 1.103593095 0.31873192 0.377206515 0.637000748 0.545040922 0.287712976 1 18.4054064 -10.34694843 4.260907111 1.000844006 0.487650648 0.273285397 0.251460759 687557980.2 7245.108694 5701639.823 0.06003881 4.50E-11 10.34694843 -0.513193359 LEGQATAVT(ph)PNKNSSCGGGISSSSSSR ddPTM_HeLa_A485_30min_R1 1 LEGQATAVTPNKNSSCGGGISSSSSSR 27 1 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 LEGQAT(0.001)AVT(0.997)PNKNS(0.002)SCGGGISSSSSSR 183.65 4.09E-20 117080000 66478 63409 42202 72028 69764 65772 78779 80117 56038 101080 TRUE FALSE FALSE 81265.80175 70824.13097 57814.27597 75962.70726 62818.0512 69215.72022 61947.22308 60468.18013 67284.31259 75882.61624 1.070940958 0.933338022 0.761890916 1.001055459 0.827831911 0.912141985 0.816355921 0.796864725 0.886689415 1 16.2114818 -4.359728042 3.588060728 0.869076678 1.076424561 0.368262865 0.076558664 0.234798255 4.915382869 0.018299645 0.107169512 4.37E-05 4.359728042 0.207347883 LEGVDGGQS(ph)PR ddPTM_HeLa_A485_30min_R1 5 LEGVDGGQSPR 11 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 LEGVDGGQS(1)PR;LEGVDGGQS(1)PR;LEGVDGGQS(1)PR;LEGVDGGQS(1)PR;LEGVDGGQS(1)PR ;;;; 200.76 1.17E-14 9767540000 8061680 11293620 10370250 9517740 13872400 10782920 12773180 14283730 9964540 12776310 TRUE FALSE FALSE 9854972.904 12614310.62 14206637.02 10037670.04 12491215.15 11347497.02 10044085.75 10780622.82 11964331.78 9591411.048 1.027478945 1.315167347 1.481183211 1.046526938 1.302333419 1.183089429 1.04719584 1.123987156 1.247400588 1 23.19331164 -6.526456334 16.92318966 1.114999738 1.242318904 0.165242757 0.136340956 3.720886758 17570.08579 0.051487065 0.040433469 2.98E-07 6.526456334 0.127319166 LEGVDGGQS(ph)PR ddPTM_HeLa_A486_30min_R1 2 LEGVDGGQSPR 11 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 LEGVDGGQS(1)PR;LEGVDGGQS(1)PR ; 143.21 1.06E-06 1236360000 1015680 1128800 912080 331560 1323870 1014280 1166540 1134770 867960 1139570 TRUE FALSE FALSE 944486.077 1039349.777 1265261.802 771888.4361 1157817.88 889148.446 874659.3536 876407.6429 943195.4716 854214.2546 1.105678197 1.216731951 1.481199588 0.903623923 1.355418589 1.040896287 1.023934392 1.025981056 1.104167329 1 19.70423845 -6.338724516 14.36548166 1.039629553 1.210522306 0.267926161 0.143404423 3.228165961 597.934112 0.048979186 0.043193165 4.58E-07 6.338724516 0.170892752 LEGVLAEVAQHYQDTLIR ddPTM_HeLa_A485_30min_R1 4 LEGVLAEVAQHYQDTLIR 18 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ;;; ;;; 188.6 1.85E-17 59369800 51199.7 60387 59826.1 51734.4 69148.3 54771.9 67748 73073 57816 78997.6 FALSE FALSE TRUE 62588.89663 67448.73435 81958.26396 54560.51927 62263.65246 57639.67199 53273.08635 55151.73218 69419.14088 59304.95216 1.055373866 1.137320441 1.381980104 0.919999381 1.049889599 0.971920049 0.898290689 0.929968412 1.170545433 1 15.85586496 -5.288269303 24.99897232 0.986329554 1.186134439 0.428888428 0.105609515 676.6172953 630441.5263 0.029881939 0.044333746 5.15E-06 5.288269303 0.199804885 LEGVLAEVAQHYQDTLIR ddPTM_HeLa_A486_30min_R1 2 LEGVLAEVAQHYQDTLIR 18 0 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 198.42 1.54E-22 37916000 34201 32819.3 30344.8 16932.1 45104.8 34580.1 35537.9 34897.4 34149.3 43841.8 FALSE FALSE TRUE 31803.68651 30218.57914 42095.11922 39418.7845 39447.3354 30313.95885 26645.94154 26952.02382 37109.38882 32863.52792 0.967750224 0.919517199 1.280906886 1.199469047 1.200337818 0.922419496 0.810805876 0.820119614 1.129196747 1 15.00419974 -6.279707658 22.65870239 0.917409334 1.116879797 0.304949474 0.132065348 302.8157139 375589.081 0.049732079 0.04398099 5.25E-07 6.279707658 0.199470463 LEHSSFPEGPGPGS(ph)GDEANGPR ddPTM_HeLa_A485_30min_R1 1 LEHSSFPEGPGPGSGDEANGPR 22 0 A4QPE4;O15020;O15020-2 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 LEHSSFPEGPGPGS(1)GDEANGPR 161.49 7.50E-14 526560000 133040 259440 264160 62101 290710 147750 225550 234040 211480 161480 TRUE FALSE FALSE 162634.289 289779.2512 361883.7766 65493.42038 261765.8917 155485.9615 177359.3999 176641.323 253922.0962 121226.0078 1.341579187 2.390404967 2.985199159 0.540258824 2.159321225 1.282612241 1.463047436 1.45712398 2.094617325 1 16.88733972 -5.252253703 24.9915011 1.473043652 2.254195394 0.288231716 0.580826546 869.9748989 2366938.612 0.153012827 0.260405301 5.59E-06 5.252253703 0.781151742 LEHSSFPEGPGPGS(ph)GDEANGPR ddPTM_HeLa_A486_30min_R1 1 LEHSSFPEGPGPGSGDEANGPR 22 0 A4QPE4;O15020;O15020-2 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 LEHSSFPEGPGPGS(1)GDEANGPR 181.24 1.44E-19 416360000 145220 170300 191410 11785 217880 118560 127160 137130 166350 56774 TRUE FALSE FALSE 135040.8279 156804.8078 265529.0781 27436.07558 190551.4587 103933.2726 95343.22304 105908.4925 180769.3519 42557.42086 3.173144076 3.684546775 6.239313209 0.644683701 4.477514259 2.442189177 2.240343073 2.488602231 4.247657595 1 15.3771231 -5.260395898 24.99879589 2.636317504 4.297555739 0.280866147 1.351198408 133.3292884 3194149.114 0.359705005 0.580123988 5.49E-06 5.260395898 1.661238235 LEITSENGEKS(ph)DDGTQDLLHFPTK ddPTM_HeLa_A486_30min_R1 1 LEITSENGEKSDDGTQDLLHFPTK 24 1 E9PRS0;E9PLV1;Q9NQV6-2;Q9NQV6-1;Q9NQV6-5;Q9NQV6;Q9NQV6-4;Q9NQV6-7;Q9NQV6-6 E9PRS0 PRDM10 PR domain zinc finger protein 10 1 0 LEIT(0.048)S(0.04)ENGEKS(0.912)DDGTQDLLHFPTK 147.23 1.77E-09 113430000 73870 72200 30905 42410 50368 93340 111830 85855 55815 144330 TRUE FALSE FALSE 68692.09447 66478.60905 42872.24366 98732.62328 44050.37578 81824.65981 83848.95118 66307.6907 60653.08914 108188.8286 0.634927796 0.614468332 0.396272371 0.912595363 0.407161963 0.756313391 0.775024116 0.612888517 0.560622478 1 16.72319201 -14 0.342372996 5.009860816 0.619784659 0.347548435 0.151049098 453.1696131 3.806973209 1329.90337 0.116748672 1.00E-14 14 -4.390076157 LEK(ac)PAKYDDIKK ddPTM_HeLa_A485_30min_R1 1 LEKPAKYDDIKK 12 3 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 LEK(0.988)PAK(0.012)YDDIKK 99.566 0.005286 90427000 165280 129580 141870 242460 182450 221450 568500 509420 133570 625240 FALSE TRUE FALSE 202045.9658 144733.2538 194353.6167 255704.9759 164284.6374 233044.7796 447035.3308 384483.9463 160376.2738 469379.1747 0.430453622 0.308350395 0.414065274 0.544772733 0.350004104 0.49649578 0.952397028 0.819132946 0.341677438 1 18.84039431 -6.599359702 6.704661501 0.761693468 0.412730043 0.500298195 0.174852214 0.191633482 13.61245876 0.066449685 0.051287231 2.52E-07 6.599359702 -0.348963425 LEK(ac)PAKYDDIKK ddPTM_HeLa_A486_30min_R1 2 LEKPAKYDDIKK 12 3 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; LEK(1)PAKYDDIKK;LEK(0.89)PAK(0.11)YDDIKK 119.77 0.0011152 188691000 309855 264647 241013 191492 289541 380430 707070 591250 261240 1206390 FALSE TRUE FALSE 288135.7646 243675.4079 334339.6882 445803.0535 253224.0679 333496.4145 530153.6074 456635.2819 283884.4935 904302.0917 0.318627776 0.269462396 0.369721237 0.49298023 0.280021544 0.368788724 0.586257195 0.504958781 0.313926614 1 19.78644528 -14 0.211774147 3.927166741 0.309666541 0.783792772 0.097116757 67.71107629 0.67565029 84.2399108 0.210775091 1.00E-14 14 -3.6175002 LEKPAKYDDIKK ddPTM_HeLa_A485_30min_R1 1 LEKPAKYDDIKK 12 3 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 110.77 0.00028997 1608000000 2951100 2101900 975080 3668600 2779900 4139400 6872400 8475900 2124200 5273300 FALSE FALSE TRUE 3607562.014 2347698.921 1335802.668 3869006.329 2503123.395 4356132.583 5404055.598 6397172.235 2550507.456 3958763.358 0.911285088 0.593038459 0.33742928 0.977327003 0.632299324 1.10037711 1.365086798 1.615952169 0.644268734 1 21.9166184 -6.34471538 4.083431957 1.210207823 0.680117615 0.379317618 0.287293706 0.226168744 7.013649126 0.103682483 0.09136042 4.52E-07 6.34471538 -0.530090208 LEKPAKYDDIKK ddPTM_HeLa_A486_30min_R1 2 LEKPAKYDDIKK 12 3 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 83.692 0.0028257 2208964000 3791780 2868722 923804 2334349 3318972 4122163 5675920 5558110 2116833 7569520 FALSE FALSE TRUE 3525995.803 2641394.021 1281525.649 5434482.443 2902675.584 3613612.44 4255744.782 4292649.686 2300321.789 5674062.923 0.621423458 0.465520749 0.225856792 0.957776203 0.511569157 0.636865063 0.750034823 0.756538964 0.405409989 1 22.43595072 -14 0.12506456 2.247251917 0.425419092 0.272103559 0.196346305 201.3977068 1.608539959 64.11506437 1.674744045 1.00E-14 14 -1.821832825 LEKPETQSS(ph)PITVQSSK ddPTM_HeLa_A485_30min_R1 2 LEKPETQSSPITVQSSK 17 1 Q96CB8;A0A087WXN4;E9PGI3 Q96CB8 INTS12 Integrator complex subunit 12 1 0 LEKPETQS(0.07)S(0.926)PIT(0.003)VQSSK;LEKPETQS(0.009)S(0.99)PITVQSSK ; 239.48 1.23E-42 1445580000 902400 629150 495070 1875190 940900 934010 1479050 1359570 661110 1910720 TRUE FALSE FALSE 1103135.767 702723.6196 678216.9946 1977626.881 847220.6923 982913.3193 1163038.885 1026133.326 793788.7129 1434412.668 0.769050491 0.489903384 0.472818603 1.378701489 0.590639438 0.685237478 0.810811917 0.715368282 0.553389363 1 20.4520287 -11.30451024 2.197535084 2.299045427 0.721801239 0.105454349 0.245842755 15077708.43 1918102.076 97395741.46 0.061512214 4.96E-12 11.30451024 -1.577244188 LEKPETQSS(ph)PITVQSSK ddPTM_HeLa_A486_30min_R1 1 LEKPETQSSPITVQSSK 17 1 Q96CB8;A0A087WXN4;E9PGI3 Q96CB8 INTS12 Integrator complex subunit 12 1 0 LEKPETQS(0.085)S(0.899)PIT(0.015)VQSSK 134.09 4.20E-06 710910000 604690 587590 235100 582540 500580 657120 751820 809530 424490 1072200 TRUE FALSE FALSE 562304.3536 541027.2284 326137.0162 1356182.56 437792.5887 576051.2155 563706.6841 625217.6909 461285.135 803714.1411 0.699632276 0.673158777 0.405787331 1.687394175 0.544711815 0.716736444 0.701377088 0.777910527 0.573941793 1 19.61632294 -11.53044464 2.013074176 3.803046126 0.760265522 0.047733983 0.329141352 14385482.22 743905.6466 184443072.2 0.081434729 2.95E-12 11.53044464 -3.042780605 LEKT(ph)IDDLEDKLK ddPTM_HeLa_A486_30min_R1 1 LEKTIDDLEDKLK 13 2 J3KN67;A0A087WWU8;P06753-5;P06753-2;P06753-7 J3KN67 TPM3 Tropomyosin alpha-3 chain 1 0 LEKT(1)IDDLEDKLK 82.707 0.0037034 57810000 38690 39511 14527 55904 34042 48203 81502 69408 24553 96530 TRUE FALSE FALSE 35978.0308 36380.00446 20152.24345 130147.3372 29772.13493 42256.20395 61109.33756 53605.31357 26681.27381 72358.2597 0.497220786 0.502776112 0.278506469 1.79865212 0.411454547 0.583985907 0.84453852 0.740831991 0.368738468 1 16.14287009 LEKVPDS(ph)PENELK ddPTM_HeLa_A485_30min_R1 2 LEKVPDSPENELK 13 1 A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35 A0A0U1RR46 INADL InaD-like protein 1 0 LEKVPDS(1)PENELK;LEKVPDS(1)PENELK ; 173.87 1.21E-12 500160000 813760 593920 349560 1455150 936060 935590 1459580 1591680 639730 1958340 TRUE FALSE FALSE 994778.1046 663373.7776 478876.7904 1534641.16 842862.5797 984576.0457 1147728.809 1201317.984 768117.943 1470161.879 0.676645286 0.451224989 0.325730654 1.043858627 0.573312771 0.669705874 0.780681928 0.817133135 0.522471678 1 20.48754359 -13.99999573 0.050749691 2.319652067 1.03E-10 0.246117587 0.189736162 771.5846987 2.886902941 138.29733 30.19038781 1.00E-14 13.99999573 -2.319652067 LEKVPDS(ph)PENELK ddPTM_HeLa_A486_30min_R1 1 LEKVPDSPENELK 13 1 A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35 A0A0U1RR46 INADL InaD-like protein 1 0 LEKVPDS(1)PENELK 54.974 0.0076717 0 86374 71263 36456 72314 75616 94827 128000 115500 53467 144090 TRUE FALSE FALSE 80319.62864 65615.86034 50572.73953 168350.6465 66131.53619 83128.20887 95973.04615 89203.17135 58101.56261 108008.9261 0.743638804 0.607504053 0.468227408 1.558673459 0.612278434 0.769642027 0.888565877 0.825887031 0.537932972 1 16.72079102 LELASLGLGAPTPPSGLSQGPTSWLRPPPT(ph)SPGPQAR ddPTM_HeLa_A485_30min_R1 1 LELASLGLGAPTPPSGLSQGPTSWLRPPPTSPGPQAR 37 1 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 LELASLGLGAPT(0.001)PPS(0.022)GLS(0.116)QGPT(0.116)S(0.116)WLRPPPT(0.314)S(0.314)PGPQAR 87.948 8.20E-05 30242000 11494 13544 11104 9884 16302 11558 11613 15131 8713.5 13510 TRUE FALSE FALSE 14050.80065 15127.85298 15211.83168 10423.93789 14678.91564 12163.15901 9131.787681 11420.09853 10462.21953 10142.20563 1.385379192 1.491574272 1.499854393 1.027778204 1.447310001 1.199261724 0.900374929 1.125997533 1.031552692 1 13.30808381 -5.9639268 0.634455435 1.000735511 1.4806531 0.580746986 0.139257569 0.623402558 0.551042102 0.102452878 0.153090678 1.09E-06 5.9639268 0.479917588 LELIT(ph)AEAEGNR ddPTM_HeLa_A485_30min_R1 2 LELITAEAEGNR 12 0 B8ZZZ9;F8WA32;A0A669KBL0;Q9BZW7 B8ZZZ9 TSGA10 Testis-specific gene 10 protein 1 0 LELIT(1)AEAEGNR;LELIT(1)AEAEGNR ; 74.678 0.01198 588167000 3770 6510 7075.2 3028.9 5444.8 4497.3 4219.9 2421.4 3297.1 6535.6 TRUE FALSE FALSE 4608.623494 7271.287871 9692.610904 3194.361137 4902.696594 4732.771674 3318.283892 1827.547853 3958.797727 4906.395199 0.939309474 1.482002076 1.975505541 0.651060709 0.999246167 0.964612813 0.676318103 0.372482806 0.80686483 1 12.26044773 -5.283542367 24.85895646 0.767683966 1.46724539 0.532014587 0.293820231 559.0921354 628802.7124 0.086033491 0.127724939 5.21E-06 5.283542367 0.699561425 LELKAS(ph)PNVEAPQPHR ddPTM_HeLa_A485_30min_R1 2 LELKASPNVEAPQPHR 16 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 LELKAS(1)PNVEAPQPHR;LELKAS(1)PNVEAPQPHR ; 173.09 1.43E-12 515910000 506520 562380 421570 698960 630090 616410 783590 860550 482140 953380 TRUE FALSE FALSE 619193.6265 628145.4489 577526.286 737142.4149 567356.0272 648684.2744 616169.5952 649498.7632 578901.0755 715719.9117 0.865133995 0.877641433 0.806916612 1.029931406 0.792706781 0.906338169 0.860908835 0.907476169 0.80883746 1 19.44903559 -10.05428051 4.332268251 1.00000892 0.874987999 0.256112099 0.064906044 17266073.39 20035456.21 1285.594019 0.014563362 8.83E-11 10.05428051 -0.12502092 LELKAS(ph)PNVEAPQPHR ddPTM_HeLa_A486_30min_R1 1 LELKASPNVEAPQPHR 16 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 LELKAS(1)PNVEAPQPHR 153.19 2.12E-08 254780000 412360 409170 242600 180340 401750 468480 549220 495490 363060 575810 TRUE FALSE FALSE 383455.6934 376745.879 336541.2171 419840.6339 351358.7688 410683.7008 411799.3469 382677.7435 394530.3331 431623.4281 0.888403336 0.872857807 0.779710264 0.972701217 0.814040077 0.95148612 0.954070887 0.886600955 0.914061442 1 18.71941365 -6.282478554 24.89094342 0.934958132 0.86713374 0.321912879 0.054530232 1049.011968 1241056.678 0.018640323 0.016456669 5.22E-07 6.282478554 -0.067824392 LELLPDPLLRPS(ph)PLLATGQPAGSEDLTKDR ddPTM_HeLa_A485_30min_R1 1 LELLPDPLLRPSPLLATGQPAGSEDLTKDR 30 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330;H0YGK8;H7C1Y3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 LELLPDPLLRPS(0.995)PLLAT(0.004)GQPAGS(0.001)EDLTKDR 67.767 0.001482 23425000 12844 21228 14067 13584 25372 22667 35363 50660 18001 17733 TRUE FALSE FALSE 15701.10349 23710.42994 19270.96868 14326.05952 22845.87459 23853.80907 27807.40616 38235.55557 21613.63559 13312.48945 1.179426549 1.781066571 1.447585649 1.076136779 1.716123395 1.791836843 2.088820897 2.872156685 1.623560767 1 13.70049276 -6.236256274 2.232162132 2.03341833 1.411147815 0.160515757 0.479798601 0.443888155 4.346078922 0.181535055 0.170182987 5.80E-07 6.236256274 -0.622270515 LELLPSAES(ph)PVCWLEQPESHQR ddPTM_HeLa_A486_30min_R1 1 LELLPSAESPVCWLEQPESHQR 22 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 LELLPS(0.005)AES(0.995)PVCWLEQPESHQR 149.73 9.63E-10 62922000 43127 52733 43402 14285 46268 40399 48944 48912 45504 47927 TRUE FALSE FALSE 40104.02001 48554.24503 60208.41675 33256.20192 40464.63601 35414.98213 36697.69352 37775.80534 49448.32336 35925.76725 1.116302395 1.351515883 1.675911786 0.925692183 1.126340204 0.985782207 1.021486703 1.051496133 1.376402709 1 15.13273135 -5.280510589 24.99637946 1.068612737 1.37827066 0.41243725 0.170443358 779.1830799 1021262.989 0.04819713 0.071610439 5.24E-06 5.280510589 0.309657923 LELQFPRT(ph)PEGR ddPTM_HeLa_A485_30min_R1 3 LELQFPRTPEGR 12 1 P48681 P48681 NES Nestin 1 0 LELQFPRT(1)PEGR;LELQFPRT(1)PEGR;LELQFPRT(1)PEGR ;; 151.8 1.28E-07 622270000 295274 634930 532170 261647 903680 741300 861680 1323630 472730 417840 TRUE FALSE FALSE 360956.6826 709179.5403 729041.8284 275940.1131 813706.4462 780113.3217 677575.0287 999007.6671 567602.5749 313680.1778 1.150715628 2.260836325 2.324156514 0.879686166 2.594063967 2.486970414 2.160082392 3.18479693 1.809494559 1 18.25893484 LELQFPRT(ph)PEGR ddPTM_HeLa_A486_30min_R1 2 LELQFPRTPEGR 12 1 P48681 P48681 NES Nestin 1 0 LELQFPRT(1)PEGR;LELQFPRT(1)PEGR ; 122.96 5.74E-05 454860000 359200 390230 544740 224160 978580 402480 606250 708290 321270 406860 TRUE FALSE FALSE 334021.9349 359306.7536 755677.9166 521855.8084 855837.3715 352826.1097 454559.8377 547027.8289 349117.9423 304979.6078 1.095227112 1.1781337 2.477798178 1.711117055 2.806211791 1.156884266 1.490459775 1.793653788 1.144725527 1 18.21835326 LELQGPR ddPTM_HeLa_A485_30min_R1 1 LELQGPR 7 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 125.01 0.0086925 27004000 17394 28495 30090 18020 36222 24547 27803 29279 23207 32967 FALSE FALSE TRUE 21263.23529 31827.24238 41221.54315 19004.38697 32615.6105 25832.24296 21862.66192 22098.27934 27864.43203 24748.93361 0.859157636 1.286004596 1.665588659 0.767887104 1.317859226 1.043771961 0.883377937 0.892898243 1.125884148 1 14.59507874 -6.488370004 7.946293387 0.965997047 1.188893902 0.138879434 0.240452382 0.519725095 107.7725761 0.086145892 0.074429139 3.25E-07 6.488370004 0.222896855 LELQGPRGS(ph)PNAR ddPTM_HeLa_A485_30min_R1 12 LELQGPRGSPNAR 13 1 P19338;H7BY16 P19338 NCL Nucleolin 1 0 LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR ;;;;;;;;;;; 191.44 7.44E-18 1.11E+11 3874237 12681030 8935580 2761690 15221690 15550290 18938900 41990800 7253620 4932040 TRUE FALSE FALSE 4736047.655 14163966.15 12241222.88 2912554.132 13706165.1 16364479.14 14892449.3 31692490.46 8709355 3702573.195 1.279123303 3.825438526 3.306139335 0.786629724 3.701794502 4.419758442 4.022189032 8.559585128 2.352243842 1 21.82009683 -4.260144849 22.967538 3.741169855 1.279120767 0.09324589 2.052484314 85.88715867 1523221.105 0.521191944 3.130330814 5.49E-05 4.260144849 -2.462049088 LELQGPRGS(ph)PNAR ddPTM_HeLa_A486_30min_R1 8 LELQGPRGSPNAR 13 1 P19338;H7BY16 P19338 NCL Nucleolin 1 0 LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR;LELQGPRGS(1)PNAR ;;;;;;; 169.15 2.46E-12 42084660000 5424920 4356220 6648260 3111630 15939950 4605020 9011580 10713050 3492650 6199440 TRUE FALSE FALSE 5044661.122 4011017.262 9222644.319 7244031.893 13940612.84 4036899.453 6756787.369 8273922.379 3795395.714 4647059.872 1.085559743 0.863130102 1.984619216 1.558841954 2.999878035 0.868699686 1.453991891 1.780463908 0.816730539 1 22.1478868 LELQSLEAAEIEPEAQAQRS(ph)PRPTGSDLLPGAPILSLR ddPTM_HeLa_A485_30min_R1 2 LELQSLEAAEIEPEAQAQRSPRPTGSDLLPGAPILSLR 38 2 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 LELQSLEAAEIEPEAQAQRS(0.994)PRPT(0.003)GS(0.003)DLLPGAPILSLR;LELQSLEAAEIEPEAQAQRS(1)PRPTGSDLLPGAPILSLR ; 178.41 9.13E-18 320420000 25722 30501 23135.9 24792 41990 31221 41250 51990 25197 35513 TRUE FALSE FALSE 31443.77016 34067.82663 31694.83218 26146.32418 37809.32816 32855.68328 32436.60052 39239.37098 30253.80678 26660.26267 1.17942462 1.277850374 1.188841707 0.980722677 1.418190384 1.23238408 1.216664701 1.471829872 1.134790274 1 14.70240337 -5.774556987 24.99988206 1.26712277 1.167657816 0.071274709 0.143185239 551.796663 1051625.127 0.042846804 0.048879807 1.68E-06 5.774556987 -0.099464955 LELSPPPPLLPVPVVSGS(ph)PVGSSGR ddPTM_HeLa_A485_30min_R1 1 LELSPPPPLLPVPVVSGSPVGSSGR 25 0 P78383-2 P78383-2 1 0 LELSPPPPLLPVPVVS(0.214)GS(0.7)PVGS(0.043)S(0.043)GR 73.107 0.0066659 17026000 6045 6822.6 5854.8 5042.5 8894.5 7592.3 8027.8 7678.2 5590.8 8948.6 TRUE FALSE FALSE 7389.689395 7620.443721 8020.734159 5317.959007 8008.93235 7989.821088 6312.594949 5795.109411 6712.822278 6717.878707 1.100003397 1.134352681 1.19393852 0.791612835 1.192181744 1.189336908 0.939670873 0.86263978 0.999247318 1 12.71379003 -6.78644322 23.91043429 0.938942599 1.096198342 0.283134354 0.116133819 187.2937205 179100.6954 0.049542378 0.033420901 1.64E-07 6.78644322 0.157255743 LELSSSAS(ph)PQEER ddPTM_HeLa_A485_30min_R1 1 LELSSSASPQEER 13 0 A0A075B6T1;Q9C0C7-6;Q9C0C7-4;Q9C0C7-2;Q9C0C7-3;Q9C0C7;Q9C0C7-5 A0A075B6T1 AMBRA1 Activating molecule in BECN1-regulated autophagy protein 1 1 0 LELS(0.008)S(0.13)S(0.301)AS(0.561)PQEER 74.62 0.0041464 0 45070 56767 47198 63303 70431 55429 70384 80204 48295 82523 TRUE FALSE FALSE 55095.66601 63405.40684 64658.50427 66761.0826 63418.64234 58331.17673 55345.88342 60533.84325 57987.36351 61951.53482 0.889334964 1.023467893 1.043694954 1.077634037 1.023681536 0.941561446 0.893373886 0.977116119 0.936011734 1 15.9188524 -6.262845002 24.50021651 0.944667469 1.017679837 0.251435294 0.052577016 126.2793341 2201044.603 0.0185419 0.017233411 5.46E-07 6.262845002 0.073012368 LELSVHLQPITR ddPTM_HeLa_A485_30min_R1 1 LELSVHLQPITR 12 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 96.551 0.0036313 34386000 72775 84057 74303 73050 112450 93158 119580 122420 77524 108180 FALSE FALSE TRUE 88963.54768 93886.73495 101790.7717 77040.53653 101254.0832 98035.60883 94030.75612 92396.30305 93082.35571 81212.71691 1.095438634 1.156059525 1.253384637 0.948626514 1.246776207 1.20714603 1.157832907 1.137707327 1.146154928 1 16.30941803 -8.78804633 1.401210531 0.999891655 1.152852641 0.231552645 0.08192241 12.60964516 20.74305924 0.079029505 0.022480147 1.63E-09 8.78804633 0.152960987 LELSVLYK ddPTM_HeLa_A485_30min_R1 1 LELSVLYK 8 0 J3KR44;F5H6Q1;Q96FW1;F5GYN4;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 105.57 0.015451 22131000 16637 16774 15027 17566 23871 16671 23257 22265 13775 21690 FALSE FALSE TRUE 20337.84325 18735.57339 20586.11263 18525.5861 21494.31942 17543.86778 18287.95196 16804.47384 16539.51615 16283.08217 1.249016804 1.150615908 1.264263879 1.137719868 1.320039977 1.077429174 1.123125939 1.032020453 1.015748491 1 13.99108619 -6.832988844 1.233962974 1.010238477 1.216415455 0.680462418 0.059465968 0.267611657 0.805656997 0.03816765 0.020498781 1.47E-07 6.832988844 0.206176978 LELSVLYK ddPTM_HeLa_A486_30min_R1 1 LELSVLYK 8 0 J3KR44;F5H6Q1;Q96FW1;F5GYN4;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 96.711 0.033094 15560000 9978.2 11922 9368.8 5750 15014 12817 14309 13710 10917 15991 FALSE FALSE TRUE 9278.779707 10977.2573 12996.65027 13386.29059 13130.80412 11235.76885 10728.73685 10588.53229 11863.29435 11986.74952 0.774086394 0.915782655 1.084251427 1.116757347 1.095443273 0.937349099 0.895049725 0.883353095 0.989700697 1 13.54915287 -9.594366361 14.64280278 0.999939586 0.970685677 0.007809603 0.103094553 0 0 0.110522552 0.026805656 2.54E-10 9.594366361 -0.029253909 LENARLS(ph)SEMNTSTVNSAR ddPTM_HeLa_A485_30min_R1 1 LENARLSSEMNTSTVNSAR 19 1 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 1 0 LENARLS(0.854)S(0.145)EMNTS(0.001)TVNSAR 55.049 0.014878 181910000 33982 41701 58618 37345 51033 35005 44195 46055 49041 56817 TRUE FALSE FALSE 41541.17866 46577.5692 80303.2375 39385.06279 45951.97533 36837.80767 34752.37721 34759.93904 58883.07887 42653.56754 0.973920379 1.091997033 1.882685134 0.923370894 1.077330174 0.863651268 0.814758981 0.814936265 1.380495988 1 15.38037879 LENARLS(ph)SEMNTSTVNSAR ddPTM_HeLa_A486_30min_R1 1 LENARLSSEMNTSTVNSAR 19 1 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 1 0 LENARLS(0.793)S(0.207)EMNTSTVNSAR 201.97 7.45E-26 477470000 59939 66667 39307 27120 83795 74601 74666 72674 60984 78358 TRUE FALSE FALSE 55737.58563 61384.06412 54527.72308 63136.73057 73284.64974 65397.48711 55983.77706 56127.71666 66270.14222 58736.64678 0.948940545 1.045072667 0.928342459 1.07491207 1.247681878 1.113401781 0.953131991 0.955582583 1.128258862 1 15.84197329 -5.283659636 23.72893749 1.070362752 0.981213969 0.191712102 0.087435947 772.7871839 825255.1574 0.027054469 0.040171965 5.20E-06 5.283659636 -0.089148783 LENEGS(ph)DEDIETDVLYSPQMALK ddPTM_HeLa_A485_30min_R1 4 LENEGSDEDIETDVLYSPQMALK 23 0 O60502-3;O60502 O60502-3 MGEA5 Protein O-GlcNAcase 1 0 LENEGS(0.999)DEDIET(0.001)DVLYSPQMALK;LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(0.995)DEDIET(0.005)DVLYSPQMALK ;;; 170.91 1.07E-14 196259000 190320 193644 168365 270472 291170 207499 313565 291777 204815 365596 TRUE FALSE FALSE 232656.0274 216288.9813 230650.2198 285247.2005 262180.0924 218363.3268 246569.2762 220218.2333 245919.4918 274459.6455 0.847687561 0.788053854 0.840379355 1.039304704 0.955259167 0.795611779 0.898380801 0.802370173 0.896013297 1 18.06623452 -5.017446216 24.69445082 0.903543297 0.816957148 0.224701724 0.073592059 1004.043775 1421190.364 0.020872727 0.037251122 9.61E-06 5.017446216 -0.086586149 LENEGS(ph)DEDIETDVLYSPQMALK ddPTM_HeLa_A486_30min_R1 4 LENEGSDEDIETDVLYSPQMALK 23 0 O60502-3;O60502 O60502-3 MGEA5 Protein O-GlcNAcase 1 0 LENEGS(0.999)DEDIET(0.001)DVLYSPQMALK;LENEGS(1)DEDIETDVLYSPQMALK;LENEGS(0.998)DEDIET(0.002)DVLYSPQMALK;LENEGS(0.996)DEDIET(0.004)DVLYSPQMALK ;;; 250.05 1.43E-49 191611000 460860 501771 305134 206794 508021 547571 640581 598529 424593 600074 TRUE FALSE FALSE 428556.0939 462008.8385 423290.0566 481426.8828 444300.2691 480017.2573 480300.8584 462257.0125 461397.0631 449811.5646 0.952745833 1.027116408 0.941038626 1.070285695 0.987747546 1.067151881 1.06778237 1.027668137 1.025756338 1 18.77896123 -5.264269738 24.99990368 1.037063576 0.978981901 0.407361439 0.033792786 247.9721903 2190290.348 0.009023958 0.014065924 5.44E-06 5.264269738 -0.058081675 LENS(ph)PLGEALR ddPTM_HeLa_A485_30min_R1 6 LENSPLGEALR 11 0 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR ;;;;; 178.67 2.24E-10 1309310000 1799150 2248270 1853210 2011820 2408290 2255260 2691900 2845210 1912510 3209690 TRUE FALSE FALSE 2199364.711 2511185.619 2538789.498 2121720.632 2168512.192 2373341.926 2116753.574 2147417.786 2296333.214 2409573.353 0.912761053 1.042170232 1.053626151 0.880537888 0.899956911 0.984963551 0.878476504 0.891202496 0.953004071 1 21.20034629 -5.263790441 24.99987289 0.921625989 1.006784254 0.295189744 0.053264117 229.7479652 2443022.46 0.014606044 0.022871417 5.45E-06 5.263790441 0.085158265 LENS(ph)PLGEALR ddPTM_HeLa_A486_30min_R1 6 LENSPLGEALR 11 0 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR ;;;;; 171.93 2.79E-08 1385950000 1851319 2260047 1926181 797906 2567652 2220598 2441879 2406012 2420307 2548867 TRUE FALSE FALSE 1721551.098 2080952.645 2672049.868 1857565.492 2245593.144 1946643.196 1830895.047 1858215.59 2630101.159 1910614.113 0.901045945 1.089153812 1.398529326 0.97223478 1.17532532 1.018857331 0.958275684 0.972575036 1.376573711 1 20.865605 LENT(ph)SPMVK ddPTM_HeLa_A486_30min_R1 1 LENTSPMVK 9 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 LENT(0.841)S(0.159)PMVK 119.74 0.0022979 184760000 557630 577210 323090 237860 561950 614800 703060 711410 435520 662600 TRUE FALSE FALSE 518543.0166 531469.7774 448199.1007 553750.1008 491464.991 538952.2268 527146.9518 549437.473 473271.2243 496680.6472 1.044016954 1.070043257 0.902388896 1.114901706 0.989498974 1.085108167 1.061339826 1.106218807 0.95286826 1 18.92195901 LENTS(ph)PMVK ddPTM_HeLa_A485_30min_R1 1 LENTSPMVK 9 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 LENT(0.014)S(0.986)PMVK 155.47 4.03E-05 248850000 398970 376610 296460 477280 530520 425910 530270 568710 328850 556960 TRUE FALSE FALSE 487719.5001 420651.2634 406132.8907 503352.5979 477699.566 448209.989 416973.4826 429232.9808 394847.1786 418120.1221 1.166457853 1.006053622 0.971330652 1.203846864 1.142493606 1.071964647 0.997257631 1.026578149 0.944339097 1 18.67355795 -6.715113486 3.880301042 0.99301051 1.093033905 0.353439405 0.067892801 0.294926775 9.210363679 0.030097661 0.021848082 1.93E-07 6.715113486 0.100023395 LENVSQLSLDKS(ph)PTEK ddPTM_HeLa_A485_30min_R1 1 LENVSQLSLDKSPTEK 16 1 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 0 LENVSQLSLDKS(0.999)PT(0.001)EK 235.92 1.22E-41 1131500000 982700 617640 378150 1922800 961570 829850 1704100 1388700 680680 2450300 TRUE FALSE FALSE 1201298.225 689867.6252 518043.4211 2027837.695 865832.7145 873299.6628 1340005.114 1048119.148 817286.2324 1839485.304 0.653062148 0.375032964 0.281624115 1.102394072 0.470692923 0.474752182 0.72846742 0.569789356 0.444301583 1 20.81087072 -10.5406188 2.973724699 1.018544801 0.567738333 0.263926862 0.217088124 93893638.39 101845519.7 13964529.55 0.053482463 2.88E-11 10.5406188 -0.450806468 LENVSQLSLDKS(ph)PTEK ddPTM_HeLa_A486_30min_R1 3 LENVSQLSLDKSPTEK 16 1 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 0 LENVSQLS(0.09)LDKS(0.831)PT(0.079)EK;LENVSQLS(0.004)LDKS(0.906)PT(0.09)EK;LENVSQLS(0.016)LDKS(0.968)PT(0.016)EK ;; 133.38 2.77E-06 354277000 365343 348892 130094 249993 284187 458370 575240 520450 254585 798160 TRUE FALSE FALSE 339734.3423 321244.5273 180469.8808 581996.3379 248541.6165 401820.9698 431308.8677 401954.8963 276652.6328 598295.5409 0.567836995 0.536932846 0.301640023 0.972757272 0.415416127 0.671609501 0.720896009 0.671833348 0.462401295 1 19.19049878 -14 0.227911005 3.099538162 0.550643744 0.317557289 0.177287128 192.9102613 1.931716428 187.1788949 0.306223361 1.00E-14 14 -2.548894418 LEPAS(ph)PPEDTSAEVSR ddPTM_HeLa_A485_30min_R1 2 LEPASPPEDTSAEVSR 16 0 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 0 LEPAS(1)PPEDTSAEVSR;LEPAS(1)PPEDTSAEVSR ; 239.19 2.01E-41 1779400000 633000 857210 832430 725750 878320 754550 868020 884230 719530 944960 TRUE FALSE FALSE 773808.6662 957453.2528 1140380.497 765395.8848 790871.3768 794057.0712 682560.4359 667371.2061 863933.0711 709398.8627 1.090794907 1.349668435 1.607530766 1.078935878 1.114847258 1.119337954 0.962167367 0.940755957 1.217838252 1 19.43623749 -5.419664619 10.78095037 1.058206104 1.349281258 0.474559042 0.138688974 0.451665597 44.78662612 0.039729204 0.058933983 3.80E-06 5.419664619 0.291075154 LEPAS(ph)PPEDTSAEVSR ddPTM_HeLa_A486_30min_R1 4 LEPASPPEDTSAEVSR 16 0 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 0 LEPAS(1)PPEDTSAEVSR;LEPAS(1)PPEDTSAEVSR;LEPAS(0.989)PPEDT(0.004)S(0.007)AEVSR;LEPAS(0.992)PPEDT(0.003)S(0.005)AEVS(0.001)R ;;; 220.87 8.90E-34 1425560000 929570 1012060 805860 319892 1033810 921240 1065450 1080290 877410 997910 TRUE FALSE FALSE 864411.9433 931860.6797 1117910.574 744724.7424 904139.9099 807586.7753 798863.1408 834331.5496 953464.6053 748026.8407 1.155589474 1.245758346 1.494479226 0.995585589 1.208699823 1.079622724 1.067960529 1.115376487 1.274639563 1 19.51273051 -5.27899564 24.99457269 1.112388077 1.293323984 0.379810686 0.112529313 864.1524743 1230277.96 0.031291879 0.04652128 5.26E-06 5.27899564 0.180935906 LEPGGFGEKPVRPGGGDT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 LEPGGFGEKPVRPGGGDTSPR 21 2 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 LEPGGFGEKPVRPGGGDT(0.5)S(0.5)PR 76.198 0.0041617 351550000 409240 417150 354990 497840 479580 418070 494280 480510 415880 645110 TRUE FALSE FALSE 500274.0261 465932.0638 486315.5734 525035.7386 431831.3313 439959.4987 388673.0401 362664.1691 499343.3013 484295.9494 1.032992382 0.962081274 1.004170227 1.084121681 0.89166827 0.908451742 0.802552738 0.74884824 1.031070572 1 18.88552941 -5.848821504 7.590552118 0.87941492 1.015160657 0.334031279 0.083320952 0.25243314 18.87009969 0.025803186 0.029351125 1.42E-06 5.848821504 0.135745736 LEPGGFGEKPVRPGGGDTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LEPGGFGEKPVRPGGGDTSPR 21 2 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 LEPGGFGEKPVRPGGGDT(0.258)S(0.742)PR 88.573 0.00055009 307700000 343560 461080 248200 148630 384250 396930 443040 461740 378610 424580 TRUE FALSE FALSE 319478.2181 424542.3416 344309.687 346018.1513 336053.782 347960.8123 332186.706 356611.8817 411428.2196 318262.4044 1.003820161 1.333938083 1.08184216 1.08721026 1.0559016 1.093314219 1.04375101 1.12049641 1.292732707 1 18.27985722 LEPGS(ph)DVEVKDAELDKEGASK ddPTM_HeLa_A486_30min_R1 1 LEPGSDVEVKDAELDKEGASK 21 2 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 LEPGS(1)DVEVKDAELDKEGASK 158.61 8.05E-11 205420000 323850 238310 86035 227170 199300 381340 561070 456510 205660 770080 TRUE FALSE FALSE 301149.7874 219425.4477 119350.0561 528863.2405 174301.9356 334294.148 420684.3516 352572.6385 223486.7744 577246.9556 0.521700088 0.380124045 0.206757359 0.916181948 0.301953841 0.579118079 0.728777081 0.610783019 0.387159728 1 19.13882913 -14 0.163972746 2.774358899 0.398281482 0.348678313 0.198810741 150.4994576 1.397504609 87.27462843 0.784663943 1.00E-14 14 -2.376077417 LEPKEES(ph)PTR ddPTM_HeLa_A486_30min_R1 1 LEPKEESPTR 10 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 LEPKEES(0.754)PT(0.246)R 63.185 0.011566 131320000 119850 127880 130770 164030 319510 241160 341420 379160 139070 221790 TRUE FALSE FALSE 111449.1339 117746.3231 181407.6461 381870.1296 279434.0765 211408.1311 255993.1048 292833.545 151124.6996 166252.3404 0.670361293 0.70823859 1.091158451 2.296930851 1.680782814 1.271609955 1.539786473 1.761379986 0.909007953 1 17.34301512 -5.009379876 10.84229373 1.539266241 0.741130218 0.423091029 0.375391915 0.269687008 306.3185843 0.09998323 0.189450434 9.79E-06 5.009379876 -0.798136022 LEPLK(ac)PLK ddPTM_HeLa_A485_30min_R1 2 LEPLKPLK 8 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 0 1 ; LEPLK(1)PLK;LEPLK(1)PLK 134.91 0.0036401 114170000 326010 375500 305860 363280 440430 420340 492530 519510 372640 537410 FALSE TRUE FALSE 398529.7998 419411.4586 419010.3419 383125.0665 396579.2428 442348.3524 387296.9419 392099.3579 447425.4299 403443.5773 0.98782041 1.03957897 1.038584738 0.949637293 0.982985639 1.096431762 0.959977959 0.971881522 1.109016118 1 18.6220074 LEPLK(ac)PLK ddPTM_HeLa_A486_30min_R1 2 LEPLKPLK 8 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 0 1 ; LEPLK(1)PLK;LEPLK(1)PLK 134.91 0.0036401 125709000 486960 497520 328610 157756 506840 480960 546800 534120 425290 542760 FALSE TRUE FALSE 452826.6187 458094.7033 455856.5925 367263.9405 443267.4011 421624.0452 409984.8565 412512.5358 462154.4796 406849.3632 1.113008056 1.125956545 1.120455465 0.902702508 1.089512338 1.036314871 1.007706767 1.013919581 1.135935118 1 18.63413521 -5.096739729 24.99997224 1.028033688 1.12049146 0.358106681 0.057169112 49.27471025 12727.96506 0.014986141 0.025956761 8.00E-06 5.096739729 0.092457772 LEPNS(ph)PMHGGTLLEDVVGGR ddPTM_HeLa_A485_30min_R1 7 LEPNSPMHGGTLLEDVVGGR 20 0 Q5VY60;Q7Z4H7-3;Q7Z4H7 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR ;;;;;; 252.04 8.90E-48 813711000 376881 449154 423457 377673 490365 375264 421263 421178 346854 464687 TRUE FALSE FALSE 460716.8782 501678.6532 580111.3658 398304.3197 441542.5388 394912.2428 331256.7186 317883.4351 416464.4163 348849.0828 1.320676765 1.438096523 1.662929313 1.141766854 1.265712196 1.132043231 0.949570273 0.911234831 1.193824025 1 18.41224352 -5.867601337 1.19887372 1.014529973 1.457615987 0.643949938 0.131273451 0.285927103 0.868779731 0.057088336 0.074619967 1.36E-06 5.867601337 0.443086014 LEPNS(ph)PMHGGTLLEDVVGGR ddPTM_HeLa_A486_30min_R1 7 LEPNSPMHGGTLLEDVVGGR 20 0 Q5VY60;Q7Z4H7-3;Q7Z4H7 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR ;;;;;; 208.89 9.71E-27 599560000 262571 287799 213875 91660.7 283956 245829 270800 269252 227541.3 291890 TRUE FALSE FALSE 244166.1288 264992.7591 296693.1278 213390.7419 248339.5907 215501.1174 203042.9758 207949.1973 247264.7631 218798.8441 1.115938842 1.211125041 1.356008662 0.975282766 1.135013266 0.984928043 0.927989252 0.950412687 1.130100865 1 17.73924559 -5.277612935 24.91861036 1.01289682 1.226034273 0.571368202 0.08447652 546.5890382 842128.8589 0.024412645 0.036339686 5.28E-06 5.277612935 0.213137453 LEPPKSEPLPTFNQFS(ph)PISSPEPEDPIKDNGFGIKPK ddPTM_HeLa_A485_30min_R1 1 LEPPKSEPLPTFNQFSPISSPEPEDPIKDNGFGIKPK 37 3 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 LEPPKSEPLPTFNQFS(0.461)PIS(0.461)S(0.077)PEPEDPIKDNGFGIKPK 76.476 0.00064804 84908000 31822 17084 7254.3 51333 33876 38404 64468 65955 15865 68581 TRUE FALSE FALSE 38900.69412 19081.82519 9937.967447 54137.19181 30503.18649 40414.77406 50693.88514 49779.43284 19048.95998 51485.01884 0.755573077 0.370628692 0.193026392 1.051513489 0.59246723 0.784981242 0.984633711 0.966872188 0.369990347 1 15.65186508 -5.26181479 24.99999966 0.815847039 0.432831323 0.354775567 0.235780803 37.11194769 2471494.491 0.064435836 0.102650505 5.47E-06 5.26181479 -0.383015716 LEPQATPGPSQAASAFGAGPTQPPHPVVPS(ph)PVRPSGGRPEGFLGQR ddPTM_HeLa_A485_30min_R1 1 LEPQATPGPSQAASAFGAGPTQPPHPVVPSPVRPSGGRPEGFLGQR 46 2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 LEPQATPGPSQAASAFGAGPT(0.076)QPPHPVVPS(0.462)PVRPS(0.462)GGRPEGFLGQR 66.842 0.00039046 463340000 14387 13037 21048 17766 18901 16591 18052 23478 13956 20231 TRUE FALSE FALSE 17587.33852 14561.56374 28834.53108 18736.51159 17019.15007 17459.67911 14195.04273 17719.98369 16756.84119 15187.78402 1.157992403 0.95876816 1.898534443 1.233656705 1.120581518 1.149587002 0.93463554 1.166726078 1.103310474 1 13.89062377 -5.684272895 4.218914799 1.082681091 1.337398464 0.201679837 0.23146928 0.36953748 12.50363761 0.07239265 0.093303401 2.07E-06 5.684272895 0.254717374 LEPQELS(ph)PLSATVFPK ddPTM_HeLa_A485_30min_R1 2 LEPQELSPLSATVFPK 16 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q3T8J9-3;Q9H869-7 GON4L;YY1AP1 GON-4-like protein;YY1-associated protein 1 1 0 LEPQELS(0.998)PLS(0.002)ATVFPK;LEPQELS(0.993)PLS(0.007)ATVFPK ; 214.63 2.10E-26 399110000 184251 195372 163999 219034 268508 229067 301587 325630 200859 305087 TRUE FALSE FALSE 225236.9993 218219.0559 224669.0547 230999.2728 241774.4007 241060.5939 237150.4737 245768.7319 241169.5589 229034.4256 0.983419845 0.95277841 0.98094011 1.008578829 1.055624717 1.052508125 1.035435931 1.07306459 1.052983883 1 17.80520494 -5.461693189 2.256684882 1.048614144 0.968759952 0.731129599 0.019662194 0.140708872 1.417279728 0.005853302 0.009333084 3.45E-06 5.461693189 -0.079854193 LEPQELS(ph)PLSATVFPK ddPTM_HeLa_A486_30min_R1 2 LEPQELSPLSATVFPK 16 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q3T8J9-3;Q9H869-7 GON4L;YY1AP1 GON-4-like protein;YY1-associated protein 1 1 0 LEPQELS(0.999)PLS(0.001)ATVFPK;LEPQELS(0.999)PLS(0.001)ATVFPK ; 252.76 1.91E-50 383750000 153599 174069 90152 61900.2 161131 187159 187394 197010 116272 168981 TRUE FALSE FALSE 142832.5033 160275.1385 125061.2688 144106.7939 140920.4475 164069.2255 140506.0391 152155.1237 126350.5506 126667.0577 1.127621545 1.265326134 0.987322758 1.137681702 1.112526414 1.29527936 1.109254779 1.201220952 0.997501267 1 16.95068185 -7.772140168 24.87465476 0.998750462 1.153869735 0.366687013 0.081885994 238.6225235 554673.0521 0.074612965 0.02005538 1.69E-08 7.772140168 0.155119273 LEPTAPALS(ph)PR ddPTM_HeLa_A485_30min_R1 6 LEPTAPALSPR 11 0 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR ;;;;; 216.81 9.51E-18 4811760000 1708060 2214000 2156370 1688420 2515770 2050540 2392830 2585060 1918050 2305080 TRUE FALSE FALSE 2088012.054 2472908.041 2954100.997 1780654.109 2265291.105 2157903.104 1881582.323 1951069.982 2302985.042 1730465.978 1.20661838 1.429041699 1.707113017 1.029002669 1.309064226 1.247006951 1.087326967 1.127482428 1.330846761 1 20.72272915 -5.277393475 24.99872624 1.173461278 1.44573613 0.421121847 0.153242145 787.4995912 1233943.873 0.042951321 0.063939261 5.28E-06 5.277393475 0.272274853 LEPTAPALS(ph)PR ddPTM_HeLa_A486_30min_R1 6 LEPTAPALSPR 11 0 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR;LEPTAPALS(1)PR ;;;;; 180.17 2.05E-10 4007120000 2159780 2429600 2034980 809571 2625760 2061690 2363540 2441950 1846200 2159010 TRUE FALSE FALSE 2008390.575 2237069.648 2822978.755 1884722.201 2296412.697 1807339.65 1772157.293 1885971.292 2006230.102 1618379.843 1.240988377 1.382289613 1.744323971 1.164573452 1.418957797 1.116758626 1.09501938 1.165345268 1.239653417 1 20.62611883 -6.095068629 1.619056884 1.128190991 1.421077817 0.408070667 0.155570025 0.390522104 2.055927122 0.063431228 0.065395572 8.03E-07 6.095068629 0.292886826 LEPTNVQTVT(ph)CSPR ddPTM_HeLa_A485_30min_R1 1 LEPTNVQTVTCSPR 14 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LEPTNVQTVT(0.628)CS(0.372)PR 94.09 0.0053994 154740000 164240 169130 184940 177930 265560 182170 223140 204390 194940 255140 TRUE FALSE FALSE 200774.6214 188908.2823 253357.002 187649.8654 239119.914 191708.1395 175464.3161 154263.032 234062.6699 191538.2935 1.048221834 0.986269006 1.32274856 0.979698952 1.248418317 1.000886747 0.916079562 0.80539003 1.222015011 1 17.54727333 -6.50011913 23.72358517 0.968057848 1.114704606 0.170118259 0.139635574 641.1638974 668321.6474 0.047754631 0.041767545 3.16E-07 6.50011913 0.146646758 LEPTNVQTVTCS(ph)PR ddPTM_HeLa_A485_30min_R1 3 LEPTNVQTVTCSPR 14 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LEPTNVQTVTCS(1)PR;LEPTNVQTVTCS(1)PR;LEPTNVQTVTCS(1)PR ;; 240.53 2.68E-35 1070590000 722760 747000 829590 713360 1142320 745490 934610 912470 744210 949530 TRUE FALSE FALSE 883535.4685 834355.152 1136489.863 752329.0505 1028586.61 784522.7037 734922.9384 688685.3018 893566.1207 712829.6458 1.239476323 1.170483238 1.594335855 1.055412124 1.442962727 1.100575303 1.03099379 0.966128872 1.253547921 1 19.44319781 -6.419333046 6.815188092 1.060653126 1.295485902 0.359076317 0.154356647 0.279475427 15.92755189 0.052271732 0.045898964 3.81E-07 6.419333046 0.234832776 LEPTNVQTVTCS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LEPTNVQTVTCSPR 14 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LEPTNVQTVTCS(1)PR;LEPTNVQTVTCS(1)PR;LEPTNVQTVTCS(1)PR;LEPTNVQTVT(0.428)CS(0.572)PR ;;; 257.72 1.28E-41 1386360000 1302870 1695300 1286710 565420 1754740 1349730 1600220 1594730 1295260 1443120 TRUE FALSE FALSE 1211545.541 1560958.254 1784958.571 1316326.335 1534644.147 1183214.036 1199828.031 1231644.792 1407534.18 1081753.359 1.119983156 1.442989052 1.650060577 1.216845156 1.41866363 1.0937928 1.109151195 1.138563409 1.301159981 1 20.04494017 -6.26081672 24.99969085 1.135982292 1.3808622 0.395374529 0.148659784 60.58453822 2432483.246 0.05100598 0.048133458 5.49E-07 6.26081672 0.244879908 LEPVS(ph)PPS(ph)PPHTDPELELVPPR ddPTM_HeLa_A485_30min_R1 5 LEPVSPPSPPHTDPELELVPPR 22 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330;H0YGK8;H7C1Y3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 LEPVS(1)PPS(0.998)PPHT(0.002)DPELELVPPR;LEPVS(1)PPS(0.995)PPHT(0.005)DPELELVPPR;LEPVS(1)PPS(0.998)PPHT(0.002)DPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR;LEPVS(0.999)PPS(0.971)PPHT(0.03)DPELELVPPR ;;;; 132.35 1.41E-06 2466319000 962675 1289097 1249607 1041397 1542945.3 1283687.6 1435662.6 1595325 1211948.3 1379178.2 TRUE FALSE FALSE 1176818.733 1439845.68 1711888.63 1098285.881 1389324.248 1350899.498 1128921.557 1204069.042 1455175.207 1035374.457 1.136611711 1.390652117 1.653400486 1.060762002 1.341856793 1.304744857 1.090350984 1.16293099 1.405457898 1 19.9817212 -6.021314019 1.035068006 1.186121334 1.358537465 0.123187227 0.178192153 1.138957726 2.613259121 0.090188372 0.104025598 9.52E-07 6.021314019 0.172416131 LEPVS(ph)PPS(ph)PPHTDPELELVPPR ddPTM_HeLa_A486_30min_R1 4 LEPVSPPSPPHTDPELELVPPR 22 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330;H0YGK8;H7C1Y3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 LEPVS(0.963)PPS(0.871)PPHT(0.166)DPELELVPPR;LEPVS(0.998)PPS(0.976)PPHT(0.026)DPELELVPPR;LEPVS(1)PPS(0.999)PPHT(0.001)DPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR ;;; 113.13 0.00010373 2749860000 878064 985449 822524 337854 1110263 880381 987851 1018911 799912 960285 TRUE FALSE FALSE 816516.2479 907358.4323 1141027.321 786541.1862 971003.4617 771768.5433 740680.2314 786927.208 869249.0162 719823.3856 1.134328593 1.26052925 1.585149001 1.092686348 1.348946813 1.072163754 1.028974949 1.093222621 1.207586519 1 19.45728345 -6.27012306 24.26734327 1.083002551 1.289071368 0.36565702 0.134210878 489.7908665 1368760.341 0.046966515 0.042078735 5.37E-07 6.27012306 0.206068817 LEPVSPPS(ph)PPHTDPELELVPPR ddPTM_HeLa_A486_30min_R1 2 LEPVSPPSPPHTDPELELVPPR 22 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330;H0YGK8;H7C1Y3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 LEPVS(0.046)PPS(0.947)PPHT(0.006)DPELELVPPR;LEPVS(0.002)PPS(0.998)PPHTDPELELVPPR ; 156.28 3.44E-10 127100000 63599 83927 73552 23423.4 84083 71321 83745 87938 63437 74402 TRUE FALSE FALSE 59141.03853 77276.31886 102033.3042 54530.85895 73536.5261 62522.14016 62791.11524 67916.43707 68935.77024 55771.25492 1.060421513 1.385594048 1.829496294 0.977759224 1.318538129 1.121045963 1.125868789 1.217767776 1.236044811 1 15.76723411 -5.307282419 24.99996431 1.157262317 1.421214987 0.297183249 0.198308409 546.1769895 297850.0368 0.055681405 0.082589138 4.93E-06 5.307282419 0.26395267 LEPVYSPPGS(ph)PPPGDPR ddPTM_HeLa_A485_30min_R1 3 LEPVYSPPGSPPPGDPR 17 0 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 LEPVYS(0.142)PPGS(0.858)PPPGDPR;LEPVYS(0.133)PPGS(0.867)PPPGDPR;LEPVYS(0.15)PPGS(0.85)PPPGDPR ;; 115.31 0.00010479 710510000 273035 366130 338848 250396 375200 317993 364910 372180 289986 328325 TRUE FALSE FALSE 333770.6938 408945.7186 464201.9758 264074.4994 337843.7706 334642.6218 286943.9975 280902.2714 348183.5303 246479.6199 1.354151284 1.659146175 1.883328026 1.071384724 1.370676289 1.35768881 1.164169263 1.139657192 1.412626044 1 17.91110884 -5.269097535 24.99875543 1.23253327 1.634902267 0.544741109 0.173679395 437.0989503 1426835.634 0.048307337 0.073220725 5.38E-06 5.269097535 0.402368997 LEPVYSPPGS(ph)PPPGDPR ddPTM_HeLa_A486_30min_R1 1 LEPVYSPPGSPPPGDPR 17 0 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 LEPVYS(0.03)PPGS(0.97)PPPGDPR 99.451 0.00021878 0 87569 86365 71990 32639 97458 75514 94688 85725 71487 60508 TRUE FALSE FALSE 81430.86531 79521.12286 99866.45596 75985.24148 85233.90888 66197.85045 70996.06089 66207.28886 77683.55072 45356.40296 1.795355451 1.753250207 2.201816049 1.675292495 1.879203449 1.459503976 1.565293018 1.45971207 1.712736144 1 15.46901861 -10.33745609 0.136347005 0.084495484 2.158325871 0.657207853 0.175212796 22.91372675 0.56592144 8.780687454 1.581908143 4.60E-11 10.33745609 2.073830387 LEQLCEEFS(ph)EEER ddPTM_HeLa_A485_30min_R1 2 LEQLCEEFSEEER 13 0 Q9H3C7-3;Q9H3C7 Q9H3C7-3 GGNBP2 Gametogenetin-binding protein 2 1 0 LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER ; 169.92 4.65E-12 31675000 24845.2 29787 36331 30429 40732 31376 36433 27735 33117 39596 TRUE FALSE FALSE 30371.92903 33270.33054 49771.34876 32091.25922 36676.57906 33018.79884 28648.79192 20932.94776 39763.27813 29725.44591 1.021748475 1.119254212 1.674368449 1.079588825 1.233844538 1.110792381 0.963780056 0.704209714 1.337684832 1 14.85941083 -6.493461833 2.660288994 0.977986141 1.237873792 0.183515361 0.21958013 0.443192483 6.276881284 0.0901072 0.072235322 3.21E-07 6.493461833 0.259887651 LEQLCEEFS(ph)EEER ddPTM_HeLa_A486_30min_R1 4 LEQLCEEFSEEER 13 0 Q9H3C7-3;Q9H3C7 Q9H3C7-3 GGNBP2 Gametogenetin-binding protein 2 1 0 LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER ;;; 189.37 2.11E-17 499704000 174655 264898 205224 91179.3 216372 219734 238373 248997 180362 215191 TRUE FALSE FALSE 162412.5864 243906.5177 284692.2289 212270.0183 189232.6062 192625.4532 178729.5541 192305.8187 195995.9234 161305.7729 1.006861586 1.512075565 1.764922753 1.315948056 1.173129782 1.194163418 1.108017096 1.192181874 1.215058332 1 17.29943855 -5.60363515 4.26148437 1.158380156 1.45082678 0.320686171 0.183098411 0.251026665 8.624426698 0.056171489 0.074234755 2.49E-06 5.60363515 0.292446623 LEQLCEEFS(ph)EEERVR ddPTM_HeLa_A486_30min_R1 1 LEQLCEEFSEEERVR 15 1 Q9H3C7-3;Q9H3C7 Q9H3C7-3 GGNBP2 Gametogenetin-binding protein 2 1 0 LEQLCEEFS(1)EEERVR 232.51 7.59E-35 76700000 33259 56352 64176 30919 104860 63530 81160 85239 50697 48260 TRUE FALSE FALSE 30927.71585 51886.46229 89026.66589 71980.99456 91707.48102 55692.31453 60852.90958 65831.94045 55091.45678 36175.38188 0.854938199 1.434303098 2.460973769 1.98977843 2.535079832 1.539508683 1.682163571 1.819799461 1.522899108 1 15.14272063 -8.263112479 1.07877902 0.998393102 1.836578662 0.209447063 0.46237772 1.542606082 3.384699783 0.469508685 0.149341346 5.46E-09 8.263112479 0.83818556 LEQLDHRKPS(ph)PAQAAETPALELPLPSVPAPAPL ddPTM_HeLa_A485_30min_R1 2 LEQLDHRKPSPAQAAETPALELPLPSVPAPAPL 33 2 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 1 0 LEQLDHRKPS(0.995)PAQAAET(0.005)PALELPLPSVPAPAPL;LEQLDHRKPS(0.963)PAQAAET(0.037)PALELPLPSVPAPAPL ; 121.15 6.89E-06 1000370000 177902 682080 234049 59741 340850 733880 840470 1734460 206684 106321 TRUE FALSE FALSE 217475.6861 761843.3227 320633.4647 63004.49956 306913.7772 772304.822 660896.7185 1309080.965 248163.583 79817.13139 2.724674294 9.544859724 4.017100829 0.78936061 3.845211822 9.675928069 8.280136193 16.40100242 3.109151866 1 16.28441081 -3.323994419 22.19541727 6.380996581 5.754774545 0 4.703054719 0 0 1.104704608 0 0.000474248 3.323994419 -0.626222037 LEQLESGEEELVLAEYES(ph)DEEKK ddPTM_HeLa_A485_30min_R1 3 LEQLESGEEELVLAEYESDEEKK 23 1 F5GXJ8;F6WZM0;F5H235;C9K0E8;B4DMS8;Q96FC9-5;Q96FC9-4;Q96FC9-3;Q96FC9-2;Q96FC9;A8MPP1 F5GXJ8 DDX11;DDX11L8 Probable ATP-dependent RNA helicase DDX11;Putative ATP-dependent RNA helicase DDX11-like protein 8 1 0 LEQLESGEEELVLAEY(0.04)ES(0.96)DEEKK;LEQLESGEEELVLAEYES(1)DEEKK;LEQLESGEEELVLAEYES(1)DEEKK ;; 241.05 5.46E-49 169763000 94359.2 66250.7 47517.9 214782 86157 84914.6 151575 109029 64399.6 268139 TRUE FALSE FALSE 115349.0785 73998.14306 65096.74859 226514.9968 77578.90656 89360.59715 119189.763 82289.4668 77324.00901 201296.882 0.573029633 0.367607001 0.323386771 1.125278218 0.385395471 0.443924398 0.592109335 0.40879653 0.384129194 1 17.6189653 -11.21150616 2.213248149 2.429718734 0.513454919 0.304527018 0.221443719 8857397.205 1721132.195 63345920.77 0.055373839 6.14E-12 11.21150616 -1.916263815 LEQLESGEEELVLAEYES(ph)DEEKK ddPTM_HeLa_A486_30min_R1 3 LEQLESGEEELVLAEYESDEEKK 23 1 F5GXJ8;F6WZM0;F5H235;C9K0E8;B4DMS8;Q96FC9-5;Q96FC9-4;Q96FC9-3;Q96FC9-2;Q96FC9;A8MPP1 F5GXJ8 DDX11;DDX11L8 Probable ATP-dependent RNA helicase DDX11;Putative ATP-dependent RNA helicase DDX11-like protein 8 1 0 LEQLESGEEELVLAEYES(1)DEEKK;LEQLESGEEELVLAEY(0.187)ES(0.813)DEEKK;LEQLESGEEELVLAEYES(1)DEEKK ;; 161.72 1.90E-14 177900000 103799 89810 31287.6 97407 56179.1 120281 157367 118130 70291.9 256767 TRUE FALSE FALSE 96523.22612 82693.12852 43402.99663 226768.4187 49132.59343 105441.9531 117992.1121 91234.37776 76384.85849 192470.8719 0.50149524 0.429639704 0.225504234 1.178196038 0.255272878 0.547833301 0.613038799 0.474016545 0.396864511 1 17.5542806 -10.15592557 4.465795715 1.00007706 0.517326037 0.254043342 0.249999761 163928985.2 22.47878 138342.4381 0.058335362 6.98E-11 10.15592557 -0.482751023 LEQLESGEEELVLAEYES(ph)DEEKKVASR ddPTM_HeLa_A485_30min_R1 2 LEQLESGEEELVLAEYESDEEKKVASR 27 2 F5GXJ8;F6WZM0;F5H235;C9K0E8;B4DMS8;Q96FC9-5;Q96FC9-4;Q96FC9-3;Q96FC9-2;Q96FC9 F5GXJ8 DDX11 Probable ATP-dependent RNA helicase DDX11 1 0 LEQLESGEEELVLAEYES(0.982)DEEKKVAS(0.018)R;LEQLESGEEELVLAEYES(0.958)DEEKKVAS(0.042)R ; 199.15 1.39E-28 193072000 56358 41949 31898 159652 92173 77058 168839 158211 56090 230511 TRUE FALSE FALSE 68894.64267 46854.57064 43698.39759 168373.3845 82995.93248 81092.63773 132765.1684 119409.5042 67346.74851 173048.8499 0.398122511 0.270759214 0.252520589 0.972981817 0.479609847 0.468611249 0.767212081 0.690033503 0.389177672 1 17.40081983 -9.436534948 0.092718941 1.624968228 8.53E-19 0.36310603 0.206819788 56.92111131 1.339104852 16.58867023 7.24934665 3.66E-10 9.436534948 -1.624968228 LEQTSVRDPS(ph)PEADAPVLGS(ph)PEKEEAASEPPAAAPDAAPPPPDRPIEK ddPTM_HeLa_A485_30min_R1 1 LEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 48 3 O15234 O15234 CASC3 Protein CASC3 2 0 LEQT(0.021)S(0.02)VRDPS(0.959)PEADAPVLGS(0.988)PEKEEAAS(0.012)EPPAAAPDAAPPPPDRPIEK 106.21 1.54E-08 267020000 63859 39723 28220 117480 71876 57315 92394 78303 50737 134430 TRUE FALSE FALSE 78064.21424 44368.25931 38659.75233 123897.6349 64719.77307 60315.92477 72653.26711 59099.06648 60919.45051 100919.075 0.773532796 0.439641954 0.383076761 1.22769293 0.641303669 0.597666247 0.719916102 0.585608484 0.603646541 1 16.62283936 -10.83572868 2.66785698 1.123172626 0.662093017 0.175998397 0.21836873 188679955.3 130187105.2 148835736.1 0.054798567 1.46E-11 10.83572868 -0.461079609 LEQTSVRDPS(ph)PEADAPVLGS(ph)PEKEEAASEPPAAAPDAAPPPPDRPIEK ddPTM_HeLa_A486_30min_R1 2 LEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 48 3 O15234 O15234 CASC3 Protein CASC3 2 0 LEQT(0.011)S(0.012)VRDPS(0.976)PEADAPVLGS(0.997)PEKEEAAS(0.003)EPPAAAPDAAPPPPDRPIEK;LEQT(0.043)S(0.038)VRDPS(0.919)PEADAPVLGS(1)PEKEEAASEPPAAAPDAAPPPPDRPIEK ; 173.98 3.34E-19 401050000 117613 91933 41485 66811 82740 144914 174419 143880 85054 195011 TRUE FALSE FALSE 109368.9361 84647.89427 57549.10301 155539.3844 72361.97768 127035.9841 130777.5214 111121.6649 92426.5492 146178.9763 0.748185128 0.579070236 0.393689328 1.064033888 0.495023153 0.869044149 0.89463974 0.760175421 0.632283462 1 17.15737631 -5.247572754 24.98293316 0.798520091 0.574190459 0.282060376 0.175897233 1098.74565 1979561.964 0.046209491 0.079516101 5.65E-06 5.247572754 -0.224329633 LEQTSVRDPS(ph)PEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK ddPTM_HeLa_A485_30min_R1 1 LEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 48 3 O15234 O15234 CASC3 Protein CASC3 1 0 LEQTSVRDPS(1)PEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 290.58 9.34E-97 821770000 63893 51933 43342 99933 80008 59429 122470 105980 65053 141490 TRUE FALSE FALSE 78105.77742 58006.11259 59376.00941 105392.0867 72042.12259 62540.61055 96303.28401 79988.23883 78108.5404 106219.1469 0.735326725 0.54609846 0.558995352 0.992213643 0.678240455 0.588788484 0.906647123 0.753049155 0.735352737 1 16.69668432 -13.99999999 0.094038995 1.89571849 0.508498689 0.318162059 0.131946972 251.7226807 1.628338889 44.78814998 2.794082991 1.00E-14 13.99999999 -1.387219801 LEQTSVRDPS(ph)PEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK ddPTM_HeLa_A486_30min_R1 1 LEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 48 3 O15234 O15234 CASC3 Protein CASC3 1 0 LEQT(0.006)S(0.02)VRDPS(0.973)PEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 145.39 9.58E-14 674590000 122920 132000 68440 77084 126570 174560 167260 192960 104780 176110 TRUE FALSE FALSE 114303.9428 121539.8393 94941.80089 179455.4476 110694.4104 153024.562 125409.7789 149027.2203 113862.4148 132010.9097 0.865867397 0.920680264 0.719196626 1.359398613 0.838524715 1.159181179 0.949995566 1.12890079 0.862522764 1 17.01029764 -5.179037407 24.99999989 1.040544119 0.843791609 0.283353841 0.150937373 121.4342752 36840.44992 0.037654264 0.065219117 6.62E-06 5.179037407 -0.19675251 LERLVPT(ph)AVY(ph)QHMKMHKR ddPTM_HeLa_A486_30min_R1 1 LERLVPTAVYQHMKMHKR 18 3 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 2 0 LERLVPT(1)AVY(1)QHMKMHKR 40.369 0.026552 465880000 151980 113530 35703 1830800 84927 177050 164140 136560 23030 359350 TRUE FALSE FALSE 141326.9868 104533.4693 49528.15776 4262194.924 74274.66375 155207.3711 123070.4359 105468.2691 25026.25894 269366.421 0.524664456 0.388071642 0.183869086 15.82303729 0.275738392 0.576194206 0.456888559 0.391542007 0.092907864 1 18.03921049 LERT(ph)PNGPNIDKK ddPTM_HeLa_A485_30min_R1 2 LERTPNGPNIDKK 13 2 Q5TBM3;A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4 Q5TBM3 HSPH1 Heat shock protein 105 kDa 1 0 LERT(1)PNGPNIDKK;LERT(1)PNGPNIDKK ; 92.211 0.001414 363610000 939330 740180 454830 1092400 920020 966560 1397040 1505970 699790 1410420 TRUE FALSE FALSE 1148280.718 826737.6123 623090.5441 1152075.046 828419.5784 1017167.587 1098550.991 1136628.496 840231.4341 1058828.251 1.084482509 0.780804263 0.588471779 1.088066025 0.78239278 0.960653993 1.037515754 1.073477682 0.793548371 1 20.01403716 -6.42189779 6.719497338 0.984552685 0.857609093 0.109011125 0.153636113 0.534078368 30.52315624 0.054496536 0.047833244 3.79E-07 6.42189779 -0.126943592 LERT(ph)PNGPNIDKK ddPTM_HeLa_A486_30min_R1 2 LERTPNGPNIDKK 13 2 Q5TBM3;A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4 Q5TBM3 HSPH1 Heat shock protein 105 kDa 1 0 LERT(1)PNGPNIDKK;LERT(1)PNGPNIDKK ; 115.31 0.00020103 353690000 1001520 909180 403170 472520 814730 1140000 1407070 1325970 689180 1518190 TRUE FALSE FALSE 931318.6199 837133.2656 559288.2213 1100050.44 712538.9663 999358.3907 1055006.204 1024075.577 748918.6773 1138025.342 0.818363691 0.735601603 0.49145498 0.966630882 0.626118716 0.878151262 0.927049833 0.899870626 0.658086116 1 20.11810125 -6.290672912 23.6750453 0.869774672 0.728233164 0.210032436 0.14054523 622.2240853 503911.127 0.048327797 0.04263057 5.12E-07 6.290672912 -0.141541507 LERT(ph)PQK ddPTM_HeLa_A485_30min_R1 1 LERTPQK 7 1 P35251-2;P35251 P35251-2 RFC1 Replication factor C subunit 1 1 0 LERT(1)PQK 63.216 0.036938 610290000 498250 499930 324150 670160 444680 433810 574660 589040 519300 1067300 TRUE FALSE FALSE 609083.9936 558392.4647 444066.574 706769.1439 400406.0978 456523.6208 451879.1965 444577.0164 623518.7467 801241.7522 0.760175056 0.696908846 0.554222958 0.882092255 0.499731943 0.569770134 0.563973601 0.554860022 0.778190534 1 19.61187808 -8.038537886 4.700605505 0.999806451 0.634527983 0.512403255 0.110148577 0.169363254 12.25545607 0.107178128 0.027986801 9.15E-09 8.038537886 -0.365278468 LERT(ph)PQK ddPTM_HeLa_A486_30min_R1 1 LERTPQK 7 1 P35251-2;P35251 P35251-2 RFC1 Replication factor C subunit 1 1 0 LERT(1)PQK 67.563 0.027482 861230000 582180 486900 416200 172910 497000 592140 562040 525100 493530 560190 TRUE FALSE FALSE 541372.1884 448316.2707 577363.7862 402543.2184 434661.6257 519087.7872 421411.6473 405546.1929 536309.5778 419914.7778 1.289243001 1.067636326 1.374954674 0.95863075 1.035118669 1.236174135 1.003564698 0.96578214 1.27718672 1 18.67973704 -5.269962734 24.99397288 1.069583795 1.226313836 0.291533049 0.124722774 844.5453054 2476553.969 0.034020388 0.051425194 5.37E-06 5.269962734 0.156730041 LERT(ph)SPCQDSSVNYGITK ddPTM_HeLa_A486_30min_R1 1 LERTSPCQDSSVNYGITK 18 1 Q15699 Q15699 ALX1 ALX homeobox protein 1 1 0 LERT(0.5)S(0.5)PCQDSSVNYGITK 98.199 9.22E-05 0 109500 108490 82526 59452 144190 119930 152380 154510 95260 144370 TRUE FALSE FALSE 101824.6155 99892.85729 114482.2773 138407.2605 126104.3457 105134.256 114252.9123 119331.4459 103517.2135 108218.8123 0.940914184 0.9230637 1.057877784 1.27895749 1.165271943 0.971497041 1.055758328 1.102686708 0.9565547 1 16.72359179 -4.809609878 5.387885869 1.084709721 0.931358034 0.27706346 0.09068804 0.224587827 14.41155165 0.025446042 0.05689473 1.55E-05 4.809609878 -0.153351688 LES(ph)LNIQR ddPTM_HeLa_A485_30min_R1 4 LESLNIQR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LES(1)LNIQR;LES(1)LNIQR;LES(1)LNIQR;LES(1)LNIQR ;;; 138.22 0.00045022 218990000 336653 337181 309686 325250 447832 303891 434727 443702 283382 370407 TRUE FALSE FALSE 411540.2984 376611.3849 424251.7385 343017.5839 403244.2736 319802.2629 341844.0251 334883.3888 340254.1681 278071.3517 1.479980932 1.354369598 1.525693804 1.233559595 1.450146774 1.150072673 1.229339243 1.204307408 1.2236218 1 18.08509559 -2.72137665 0.086084113 0.733740931 2.418505373 0.69473644 0.086214005 63.47237833 0.572196848 2.15071193 13.11746934 0.00189943 2.72137665 1.684764442 LES(ph)LNIQR ddPTM_HeLa_A486_30min_R1 3 LESLNIQR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LES(1)LNIQR;LES(1)LNIQR;LES(1)LNIQR ;; 126.71 0.00059522 383910000 344060 388650 304787 153625 416590 354730 464580 460450 287608 379260 TRUE FALSE FALSE 319943.1707 357851.9586 422808.6889 357646.7638 364337.3977 310967.0192 348337.1702 355615.5866 312538.093 284290.8274 1.125407997 1.258753094 1.487239995 1.258031316 1.281565786 1.093834163 1.225284591 1.2508866 1.099360454 1 18.11700803 -6.186281618 7.330112605 1.155439665 1.291639261 0.315693378 0.106428549 0.392378337 33.65902026 0.036027908 0.03601791 6.51E-07 6.186281618 0.136199596 LES(ph)PSFTGTGDTEIAHATEDLENNGSK ddPTM_HeLa_A485_30min_R1 1 LESPSFTGTGDTEIAHATEDLENNGSK 27 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 LES(0.844)PS(0.156)FTGTGDTEIAHATEDLENNGSK 209.96 7.66E-29 167030000 141410 83450 82823 161830 105240 101000 130020 91134 92817 204270 TRUE FALSE FALSE 172866.1666 93208.75158 113462.6743 170670.3631 94761.93608 106288.2038 102240.1648 68783.24361 111444.5205 153349.2483 1.12727104 0.607820075 0.739897166 1.112952069 0.617948488 0.693111998 0.666714483 0.448539816 0.72673666 1 17.22646157 LES(ph)PSFTGTGDTEIAHATEDLENNGSK ddPTM_HeLa_A486_30min_R1 1 LESPSFTGTGDTEIAHATEDLENNGSK 27 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 LES(0.942)PS(0.035)FT(0.01)GT(0.013)GDTEIAHATEDLENNGSK 186.18 2.04E-20 220050000 163240 213550 124830 48055 164860 224890 230730 179330 195670 203310 TRUE FALSE FALSE 151797.719 196627.5203 173167.5191 111874.4686 144181.7215 197145.3583 172998.9136 138500.4737 212630.8331 152399.8527 0.996048988 1.290208073 1.136270909 0.734085149 0.946075203 1.293605964 1.135164572 0.908796638 1.395216789 1 17.21750198 -6.234655675 24.81340018 1.140144637 1.026034963 0.104750076 0.183375636 1972.193118 1827112.598 0.06321821 0.063200543 5.83E-07 6.234655675 -0.114109673 LES(ph)YRPDTDLSR ddPTM_HeLa_A485_30min_R1 3 LESYRPDTDLSR 12 1 Q8ND76-2;Q8ND76 Q8ND76-2 CCNY Cyclin-Y 1 0 LES(1)YRPDTDLSR;LES(1)YRPDTDLSR;LES(1)YRPDTDLSR ;; 143.93 1.03E-07 335862000 647100 595850 453150 759220 686320 586150 936190 929840 632030 1314660 TRUE FALSE FALSE 791045.1625 665529.4743 620789.0421 800694.2662 617987.571 616839.9076 736165.3585 701795.2821 758872.6237 986939.4565 0.801513363 0.674336678 0.629004179 0.811290157 0.626165634 0.625002784 0.745907313 0.711082405 0.768915072 1 19.91260206 -8.405762833 1.209995893 1.00013027 0.696220656 0.656438877 0.064471007 0.901210471 1.992667897 0.061223467 0.01865402 3.93E-09 8.405762833 -0.303909613 LES(ph)YRPDTDLSR ddPTM_HeLa_A486_30min_R1 3 LESYRPDTDLSR 12 1 Q8ND76-2;Q8ND76 Q8ND76-2 CCNY Cyclin-Y 1 0 LES(1)YRPDTDLSR;LES(1)YRPDTDLSR;LES(1)YRPDTDLSR ;; 125.52 2.03E-05 294491000 502774 564509 341888 190736 536671 662748 641093 662276 544134 762690 TRUE FALSE FALSE 467532.1389 519775.2509 474276.1897 444043.0473 469356.7189 580984.8901 480684.7506 511490.2122 591299.9732 571707.4597 0.817782121 0.909162968 0.829578452 0.776696263 0.820973578 1.016227583 0.840787963 0.894671223 1.034270173 1 19.12491759 -7.285183231 0.675579191 1.012620796 0.837895352 0.465864285 0.064532291 0.689431518 0.625886738 0.063222438 0.031785813 5.19E-08 7.285183231 -0.174725444 LESEST(ph)SPSLEMK ddPTM_HeLa_A485_30min_R1 3 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LESEST(0.701)S(0.299)PSLEMK;LESES(0.001)T(0.819)S(0.18)PSLEMK;LESEST(0.44)S(0.44)PS(0.119)LEMK ;; 335.1 2.46E-80 1398430000 2845300 2407520 1880100 3894950 3356370 2878590 4025380 3903130 2508250 5009850 TRUE FALSE FALSE 3478227.169 2689058.521 2575627.227 4107721.256 3022198.018 3029308.521 3165324.679 2945881.248 3011632.768 3760986.594 0.924817752 0.714987532 0.684827548 1.092192475 0.803565219 0.805455815 0.841620835 0.78327353 0.80075605 1 21.84267973 -11.34053183 2.208342526 1.983713565 0.825894505 0.185896398 0.107941099 6594393.539 506107.936 32679156.74 0.027927883 4.57E-12 11.34053183 -1.15781906 LESEST(ph)SPSLEMK ddPTM_HeLa_A486_30min_R1 1 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LESEST(0.819)S(0.175)PS(0.006)LEMK 297.91 2.73E-57 362650000 453630 463060 259890 205250 462980 493380 596300 539810 350160 641470 TRUE FALSE FALSE 421832.8795 426365.4392 360526.3681 477832.3728 404908.7313 432511.7919 447099.433 416907.047 380512.1507 480841.7367 0.877280085 0.886706387 0.749781769 0.993741467 0.842083164 0.899488873 0.929826591 0.867035898 0.791345929 1 18.8752026 -5.258495023 24.9916755 0.896208343 0.842801122 0.151461747 0.069261921 603.9463701 5126271.555 0.018581819 0.030411393 5.51E-06 5.258495023 -0.053407221 LESESTS(ph)PSLEMK ddPTM_HeLa_A485_30min_R1 2 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LESEST(0.002)S(0.997)PS(0.001)LEMK;LESEST(0.161)S(0.837)PS(0.001)LEMK ; 251.84 3.10E-36 1207530000 2230700 2238400 1639400 2943700 3003200 2637300 3691800 3691500 2089820 3953100 TRUE FALSE FALSE 2726911.519 2500161.409 2245882.281 3104506.877 2704190.863 2775384.95 2903016.771 2786153.837 2509227.705 2967664.921 0.918874466 0.842467554 0.756784321 1.046110986 0.911218394 0.935208328 0.978215819 0.938837069 0.845522581 1 21.50089678 -5.25616366 24.99967276 0.947034131 0.839684664 0.402334496 0.062080234 463.5098315 2196393.734 0.01685616 0.028091448 5.54E-06 5.25616366 -0.107349466 LESESTS(ph)PSLEMK ddPTM_HeLa_A486_30min_R1 1 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LESEST(0.007)S(0.993)PSLEMK 247.11 2.69E-35 542170000 791230 750840 439220 334170 819030 850370 1086800 991380 664910 1053000 TRUE FALSE FALSE 735768.8629 691340.7039 609297.7467 777964.648 716299.6202 745459.9953 814871.145 765664.4157 722544.9342 789321.9461 0.932153054 0.875866568 0.771925511 0.985611324 0.907487273 0.944430849 1.03236854 0.970028034 0.915399525 1 19.59025434 -5.28912215 24.98888201 0.963345478 0.861570171 0.474445725 0.050643244 635.6653509 573805.546 0.014645192 0.021727257 5.14E-06 5.28912215 -0.101775307 LESGGGGEGGEGT(ph)EEEDGAER ddPTM_HeLa_A485_30min_R1 2 LESGGGGEGGEGTEEEDGAER 21 0 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 0 LESGGGGEGGEGT(1)EEEDGAER;LESGGGGEGGEGT(1)EEEDGAER ; 283.01 3.14E-72 1050660000 201516 267220 253940 244730 260400 223410 259040 221073 232130 286280 TRUE FALSE FALSE 246342.539 298469.0545 347882.9733 258098.9802 234473.6617 235107.4021 203693.9878 166854.5001 278716.3618 214915.6646 1.146228868 1.388772917 1.618695287 1.200931448 1.091003125 1.093951912 0.947785673 0.77637198 1.296863876 1 17.71341111 -5.648190739 2.729818652 1.015810099 1.387330746 0.474486968 0.163727988 0.225940516 3.405672425 0.052244443 0.070412713 2.25E-06 5.648190739 0.371520647 LESGGGGEGGEGT(ph)EEEDGAER ddPTM_HeLa_A486_30min_R1 2 LESGGGGEGGEGTEEEDGAER 21 0 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 0 LESGGGGEGGEGT(1)EEEDGAER;LESGGGGEGGEGT(1)EEEDGAER ; 324.43 4.43E-102 692420000 400480 454620 385590 151034 506340 456140 467520 452640 389560 488690 TRUE FALSE FALSE 372408.4201 418594.2555 534900.7745 351614.7848 442830.1158 399866.0845 350541.5511 349583.7531 423327.3745 366318.8432 1.016623706 1.142704677 1.460205459 0.959859946 1.208865239 1.091579349 0.956930165 0.954315508 1.15562544 1 18.48274039 -6.529855266 5.543356128 1.013439686 1.161935702 0.195720833 0.13439926 0.273299948 28.57238043 0.050984773 0.040932551 2.95E-07 6.529855266 0.148496016 LESIISGAALMADSS(ph)CTR ddPTM_HeLa_A486_30min_R1 1 LESIISGAALMADSSCTR 18 0 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;H0YBB8 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 LESIISGAALMADS(0.078)S(0.919)CT(0.003)R 247 1.15E-45 42761000 61754 89301 69550 42998 99141 76410 90134 83501 58914 73579 TRUE FALSE FALSE 57425.3635 82224.46353 96481.62261 100101.517 86705.81133 66983.31108 67581.51986 64489.64511 64020.71296 55154.33948 1.041175799 1.490806785 1.749302476 1.814934563 1.572057832 1.21447037 1.225316457 1.169257863 1.160755682 1 15.75118678 -6.306594159 4.512305331 1.163094604 1.559863928 0.468690484 0.201557363 0.210294565 9.715763975 0.077663446 0.069628133 4.94E-07 6.306594159 0.396769324 LESLSETPGPSS(ph)PR ddPTM_HeLa_A485_30min_R1 4 LESLSETPGPSSPR 14 0 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895;Q12774-2;C9J591 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 LESLSETPGPSS(1)PR;LESLSETPGPS(0.001)S(0.999)PR;LESLSETPGPS(0.001)S(0.999)PR;LESLSETPGPSS(1)PR ;;; 388.11 3.19E-125 2100520000 1553820 1901850 1973680 1666890 2198380 1761710 2141300 1862250 1781110 2286980 TRUE FALSE FALSE 1899461.898 2124254.814 2703826.364 1757947.98 1979501.568 1853950.411 1683793.762 1405530.268 2138562.44 1716877.975 1.106346477 1.237277689 1.574850632 1.02392133 1.152965789 1.079838194 0.980730015 0.818654726 1.245611203 1 20.71135607 -5.364544325 24.98293345 1.039054244 1.299403644 0.388802715 0.151009758 35.43731162 8575.234645 0.042918267 0.063658095 4.32E-06 5.364544325 0.2603494 LESLSETPGPSS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LESLSETPGPSSPR 14 0 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895;Q12774-2;C9J591 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 LESLSETPGPS(0.009)S(0.991)PR;LESLSETPGPS(0.01)S(0.99)PR;LESLSETPGPSS(1)PR;LESLSETPGPS(0.008)S(0.992)PR ;;; 326.57 4.23E-81 2349640000 2124830 2537260 2014800 638665 2541270 2226190 2263620 2340700 2093740 2361850 TRUE FALSE FALSE 1975890.39 2336198.277 2794984.518 1486844.396 2222520.22 1951545.312 1697238.334 1807773.707 2275227.069 1770427.387 1.11605277 1.319567407 1.578706102 0.839822298 1.255358021 1.102301809 0.958660234 1.021094522 1.285128713 1 20.75566624 -5.262809361 24.99716731 1.071854647 1.336254614 0.371956068 0.161872828 133.1576921 2429656.251 0.04454247 0.070391238 5.46E-06 5.262809361 0.264399967 LESS(ph)EGEIIQTVDR ddPTM_HeLa_A485_30min_R1 1 LESSEGEIIQTVDR 14 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 LES(0.03)S(0.97)EGEIIQTVDR 175.6 1.33E-12 152140000 236210 278630 207880 341480 210740 239750 329210 308050 238570 347140 TRUE FALSE FALSE 288754.0996 311213.3547 284783.4626 360134.1877 189757.9856 252302.9393 258871.5941 232500.2545 286448.8107 260604.3866 1.108017034 1.194198451 1.092780771 1.381919132 0.728145785 0.968145404 0.99335087 0.89215787 1.099171101 1 17.99150184 -5.758311249 25 0.944828372 1.186980351 0.525080768 0.115174408 66.21436296 529180.7814 0.033519293 0.041441473 1.74E-06 5.758311249 0.242151978 LESS(ph)EGEIIQTVDR ddPTM_HeLa_A486_30min_R1 2 LESSEGEIIQTVDR 14 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 LES(0.024)S(0.976)EGEIIQTVDR;LES(0.008)S(0.992)EGEIIQTVDR ; 211.17 2.42E-22 229611000 206799 247950 181773 71227 213031 182996 198627 199795 189832 221189 TRUE FALSE FALSE 192303.458 228301.539 252160.3736 165820.0556 186310.6655 160419.8141 148928.4237 154306.04 206286.7906 165801.8347 1.159839144 1.376954238 1.520853941 1.000109896 1.123694837 0.967539439 0.898231458 0.930665455 1.244176767 1 17.33910045 -5.277993619 24.80313325 1.017224343 1.354989617 0.596482502 0.123947746 476.0408404 713248.473 0.035587246 0.052957828 5.27E-06 5.277993619 0.337765274 LESS(ph)PR ddPTM_HeLa_A485_30min_R1 1 LESSPR 6 0 Q9HCM1 Q9HCM1 KIAA1551 Uncharacterized protein KIAA1551 1 0 LES(0.037)S(0.963)PR 76.847 0.02376 1093200000 1911200 2582600 1647800 1990100 1954100 2143500 2085700 2867400 2155000 2545100 TRUE FALSE FALSE 2336339.846 2884612.604 2257389.791 2098814.124 1759542.943 2255730.346 1640073.156 2164165.654 2587488.733 1910653.409 1.222796262 1.509751895 1.18147529 1.098479773 0.920911629 1.180606768 0.858383393 1.132683533 1.354242858 1 20.86563467 -4.96591265 5.091691914 1.0759729 1.366626452 0.381531998 0.145260152 0.179834572 11.74716669 0.03830925 0.080500555 1.08E-05 4.96591265 0.290653552 LESSDLT(ph)PPHS(ph)PPPSSR ddPTM_HeLa_A486_30min_R1 1 LESSDLTPPHSPPPSSR 17 0 Q9H7P9;Q9H7P9-3;H7BXC7 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 2 0 LES(0.002)S(0.002)DLT(0.996)PPHS(0.858)PPPS(0.117)S(0.025)R 69.133 0.013312 435520000 327300 336300 283580 83391 395430 304630 335990 344040 304410 347760 TRUE FALSE FALSE 304357.9602 309650.3632 393389.7705 194138.4623 345831.4822 267047.8479 251921.7483 265709.6023 330796.5039 260678.6325 1.167560062 1.187862466 1.509098643 0.744742523 1.326658341 1.024433209 0.966407357 1.01929951 1.268982044 1 17.99191281 -5.247825845 24.99778354 1.057848625 1.278142556 0.280908076 0.174040739 1103.95648 2027131.45 0.045599512 0.078444132 5.65E-06 5.247825845 0.220293931 LESTS(ph)PK ddPTM_HeLa_A485_30min_R1 4 LESTSPK 7 0 Q03111 Q03111 MLLT1 Protein ENL 1 0 LES(0.086)T(0.122)S(0.792)PK;LES(0.134)T(0.098)S(0.768)PK;LES(0.015)T(0.058)S(0.927)PK;LES(0.049)T(0.134)S(0.817)PK ;;; 92.201 0.0063219 4484370000 7336400 6201540 2993060 14842400 5108530 6481500 10179800 11024500 5635880 17330600 TRUE FALSE FALSE 8968356.87 6926756.157 4100317.446 15653202.73 4599906.816 6820861.318 8004802.569 8320724.089 6766949.421 13010400.37 0.689322128 0.532401461 0.3151569 1.20312998 0.353556131 0.524262215 0.615261817 0.639544046 0.520118461 1 23.63316202 -10.68812443 2.527260544 1.065300412 0.598869759 0.213662291 0.230671412 21356942.57 16968890.02 8914216.6 0.058782315 2.05E-11 10.68812443 -0.466430653 LESTS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LESTSPK 7 0 Q03111 Q03111 MLLT1 Protein ENL 1 0 LES(0.07)T(0.17)S(0.759)PK;LES(0.029)T(0.202)S(0.769)PK ; 65.404 0.027078 1669900000 6864500 3920100 2919200 4787700 3522000 9579500 7873000 6216800 5953600 13890700 TRUE FALSE FALSE 6383333.998 3609456.999 4049592.419 11146007.56 3080237.919 8397678.687 5903092.128 4801370.352 6469662.842 10412378.31 0.613052447 0.346650582 0.388920984 1.070457414 0.295824626 0.80650918 0.56693024 0.461121389 0.621343429 1 23.3117963 -11.334631 1.254604229 2.125298808 0.572012926 0.253162249 0.219194407 48937.00735 5382.64197 154422.4689 0.061113855 4.63E-12 11.334631 -1.553285882 LET(ph)PPSK ddPTM_HeLa_A485_30min_R1 1 LETPPSK 7 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0Y837;E9PKD2;B7ZAV2 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 LET(0.999)PPS(0.001)K 89.247 0.033838 368660000 419810 339580 239830 688490 481230 340620 555360 445870 323820 845140 TRUE FALSE FALSE 513195.2862 379290.927 328553.0972 726100.4654 433317.0515 358454.3365 436702.7991 336519.6834 388807.7037 634462.1516 0.808866667 0.597814899 0.51784507 1.144434642 0.682967535 0.564973554 0.688303941 0.53040151 0.612814654 1 19.27517458 -5.986626856 24.97689806 0.647562549 0.759371541 0.032922607 0.195649183 712.0975914 1329970.353 0.060682504 0.068771625 1.03E-06 5.986626856 0.111808992 LET(ph)PPSK ddPTM_HeLa_A486_30min_R1 3 LETPPSK 7 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0Y837;E9PKD2;B7ZAV2 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 LET(1)PPSK;LET(1)PPSK;LET(1)PPSK ;; 113.71 0.012919 680200000 1562040 1541660 733550 738340 1262790 1776010 2068910 1938070 1186850 2374060 TRUE FALSE FALSE 1452549.062 1419493.247 1017600.205 1718892.834 1104399.103 1556903.943 1551246.835 1496813.769 1289727.114 1779579.923 0.816231428 0.797656362 0.571820457 0.965898081 0.620595394 0.874871605 0.871692704 0.841105111 0.724736831 1 20.7631053 LETHASMRKK ddPTM_HeLa_A485_30min_R1 1 LETHASMRKK 10 2 O60518 O60518 RANBP6 Ran-binding protein 6 0 0 85.212 0.011166 98544000 341740 279040 346640 411930 547070 398090 516870 541990 384850 644280 FALSE FALSE TRUE 417758.884 311671.3007 474876.5609 434432.6928 492601.7899 418933.3768 406436.5021 409066.1027 462085.8649 483672.8531 0.863722 0.644384523 0.98181355 0.89819532 1.018460695 0.866150279 0.840312826 0.84574956 0.955368617 1 18.88367204 -4.771322174 24.99999265 0.917393617 0.75405324 0.434140165 0.077944658 166.8584279 422096.1082 0.020045645 0.042538609 1.69E-05 4.771322174 -0.163340377 LETHASMRKK ddPTM_HeLa_A486_30min_R1 2 LETHASMRKK 10 2 O60518 O60518 RANBP6 Ran-binding protein 6 0 0 ; ; 73.26 0.021845 249900000 697190 1222470 1056390 439380 1594980 1323950 1489610 1461200 1238280 1192450 FALSE FALSE TRUE 648320.5813 1125597.025 1465452.499 1022898.845 1394922.736 1160614.51 1116893.823 1128516.658 1345615.107 893852.7585 0.725310265 1.259264475 1.639478634 1.144370631 1.560573285 1.298440374 1.249527746 1.262530822 1.505410253 1 19.76967767 -4.280119885 4.334398841 1.345007363 0.689230383 0.490634031 0.183745273 0.14432566 6.353348835 0.042809795 0.28093505 5.25E-05 4.280119885 -0.655776981 LETLGSASTST(ph)PGRR ddPTM_HeLa_A485_30min_R1 4 LETLGSASTSTPGRR 15 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 LETLGSASTS(0.253)T(0.746)PGRR;LETLGSASTS(0.003)T(0.997)PGRR;LETLGSASTS(0.031)T(0.969)PGRR;LETLGSASTS(0.047)T(0.953)PGRR ;;; 189.87 3.71E-18 2614650000 491251 632490 626090 514246 906270 629890 705840 825830 539910 679050 TRUE FALSE FALSE 600528.0902 706454.2036 857706.7448 542337.9568 816038.5767 662870.0664 555031.5178 623293.8976 648264.9847 509775.332 1.178025009 1.385814807 1.682519124 1.063876423 1.600780825 1.300318052 1.088776728 1.222683521 1.271668015 1 18.95950204 -6.54961642 7.758408853 1.167740394 1.388237993 0.271166327 0.181494361 0.281775598 64.53558367 0.066897305 0.052239357 2.82E-07 6.54961642 0.220497599 LETLGSASTST(ph)PGRR ddPTM_HeLa_A486_30min_R1 4 LETLGSASTSTPGRR 15 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 LETLGSASTS(0.019)T(0.981)PGRR;LETLGSASTS(0.02)T(0.98)PGRR;LETLGSASTS(0.009)T(0.991)PGRR;LETLGSAST(0.002)S(0.091)T(0.907)PGRR ;;; 185.96 5.76E-18 1949770000 611220 686660 571280 251814 824450 632890 724120 783580 537690 709690 TRUE FALSE FALSE 568376.6343 632246.5608 792494.9154 586235.718 721039.7933 554810.4666 542937.517 605175.9394 584297.4021 531979.0047 1.068419297 1.188480288 1.489710888 1.101990328 1.355391448 1.042917975 1.02059952 1.137593653 1.098346734 1 19.02100978 -6.280541659 24.73187632 1.06603541 1.244008795 0.368194682 0.118314865 831.0230718 1075928.667 0.041535522 0.036690384 5.24E-07 6.280541659 0.177973384 LETLPS(ph)FEESEELEAASR ddPTM_HeLa_A485_30min_R1 1 LETLPSFEESEELEAASR 18 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 LETLPS(0.951)FEES(0.025)EELEAAS(0.025)R 61.732 0.019613 16231000 6901.4 9837.7 10070 8387.6 12839 9144.8 15552 17660 13995 15354 TRUE FALSE FALSE 8436.59262 10988.13344 13795.31205 8845.793349 11560.70408 9623.607587 12229.18815 13328.85731 16803.66813 11526.53037 0.7319282 0.953290634 1.196831276 0.767428972 1.002964787 0.834909316 1.060960043 1.156363353 1.457825347 1 13.49267069 -7.155763516 2.624924998 1.239667459 0.927506427 0.386575714 0.162272581 0.287693731 3.815421708 0.092018843 0.045306789 6.99E-08 7.155763516 -0.312161033 LETLPS(ph)FEESEELEAASR ddPTM_HeLa_A486_30min_R1 1 LETLPSFEESEELEAASR 18 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 LETLPS(0.998)FEES(0.002)EELEAASR 80.534 0.0029034 20441000 15859 17259 14151 7642.2 21282 16949 17660 19189 16731 15434 TRUE FALSE FALSE 14747.366 15891.33398 19630.64618 17791.42782 18612.61311 14858.0047 13241.28121 14820.08359 18181.25655 11569.22594 1.274706369 1.373586622 1.696798582 1.537823525 1.608803666 1.28426956 1.144526114 1.280991803 1.571518842 1 13.49800472 -6.328875745 7.829028782 1.265851935 1.504421399 0.328570847 0.172693028 0.408934626 43.16931092 0.062513751 0.055119793 4.69E-07 6.328875745 0.238569464 LETVVCTGS(ph)VPVDK ddPTM_HeLa_A485_30min_R1 1 LETVVCTGSVPVDK 14 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 LETVVCT(0.001)GS(0.999)VPVDK 165.86 5.92E-12 148180000 234300 171490 147310 250940 257400 216180 321780 285140 173210 327130 TRUE FALSE FALSE 286419.2267 191544.2637 201806.0991 264648.2168 231772.3522 227498.8505 253029.0743 215208.9679 207971.6582 245582.5114 1.166285112 0.779958893 0.821744586 1.077634622 0.943765706 0.926364216 1.030322041 0.876320413 0.846850442 1 17.9058483 -10.21931785 5.71279754 1.000002179 0.937172017 0.022367181 0.114437812 3.10E-06 4.24E-07 0.108260215 0.026256048 6.04E-11 10.21931785 -0.062830162 LEVFT(ph)TPKK ddPTM_HeLa_A486_30min_R1 1 LEVFTTPKK 9 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LEVFT(0.578)T(0.422)PKK 101.93 0.0013971 135890000 393990 283080 132520 132790 218030 342510 402540 328370 235130 513120 TRUE FALSE FALSE 366373.3356 260647.7098 183835.293 309141.8308 190682.6444 300254.5986 301820.2344 253607.3193 255511.2577 384631.4121 0.952530979 0.677655807 0.477951845 0.803735267 0.495754216 0.780629426 0.78469991 0.659351554 0.664301588 1 18.55311706 -10.41841787 2.77306196 1.007476322 0.693223814 0.306357624 0.135286015 19294603.94 21304322.28 1135297.972 0.034365898 3.82E-11 10.41841787 -0.314252509 LEVFTT(ph)PK ddPTM_HeLa_A485_30min_R1 1 LEVFTTPK 8 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LEVFT(0.376)T(0.624)PK 90.108 0.019074 51417000 399990 361630 231580 583610 329360 298390 425620 386950 285080 732620 TRUE FALSE FALSE 488966.3956 403919.4827 317251.0788 615491.1365 296567.7619 314013.239 334682.81 292049.9058 342292.9411 549991.3169 0.889043846 0.734410654 0.57682925 1.119092461 0.539222626 0.570942176 0.608523807 0.531008212 0.622360628 1 19.06904932 -4.322905 3.523922527 0.679913878 0.901846057 0.077124021 0.192018944 0.619050057 13.1169015 0.048473143 0.325300837 4.75E-05 4.322905 0.22193218 LEVFTT(ph)PK ddPTM_HeLa_A486_30min_R1 1 LEVFTTPK 8 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LEVFT(0.064)T(0.936)PK 109.66 0.0060145 63163000 340460 322370 130820 123490 188450 314950 346530 275750 235920 499230 TRUE FALSE FALSE 316595.5121 296824.2271 181477.0075 287490.9608 164812.8438 276094.6712 259824.5288 212967.7446 256369.7356 374219.5586 0.846015407 0.793182025 0.484947949 0.768241409 0.440417504 0.737787924 0.694310393 0.56909838 0.685078398 1 18.51352544 -9.452441642 10.38115353 0.999999963 0.663094812 0.382928978 0.125949197 0 0 0.119238461 0.028919575 3.53E-10 9.452441642 -0.336905151 LEVFTT(ph)PKK ddPTM_HeLa_A485_30min_R1 1 LEVFTTPKK 9 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LEVFT(0.183)T(0.817)PKK 67.153 0.014871 151790000 232790 201960 126640 286920 229000 207910 276220 271080 162960 454370 TRUE FALSE FALSE 284573.3324 225577.4652 173489.4059 302593.7131 206199.9559 218795.8461 217203.3405 204597.205 195664.5772 341103.9211 0.834271654 0.661315955 0.508611585 0.887101245 0.604507727 0.641434568 0.636765886 0.599809009 0.573621601 1 18.37985181 -10.92287167 6.539684607 1.106970144 0.658290108 0.463102905 0.109528808 0.061185588 0.000721616 0.037985145 0.02518139 1.19E-11 10.92287167 -0.448680036 LEVNLQAMK ddPTM_HeLa_A485_30min_R1 1 LEVNLQAMK 9 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 159.58 1.28E-05 37916000 57416 61941 54973 63926 82960 67681 79838 91491 61216 98126 FALSE FALSE TRUE 70187.99112 69184.46113 75309.80032 67418.11551 74700.21111 71224.67251 62779.95908 69052.6888 73501.48969 73664.99408 0.952799793 0.939176905 1.022328194 0.915198818 1.014053039 0.966872711 0.852235989 0.9373881 0.997780433 1 16.16869159 -6.5656128 24.99986902 0.937050786 0.969415406 0.029844055 0.04875092 367.5800917 215035.1998 0.018381765 0.014238465 2.72E-07 6.5656128 0.03236462 LEVPAERS(ph)PR ddPTM_HeLa_A485_30min_R1 5 LEVPAERSPR 10 1 Q9UJF2-2 Q9UJF2-2 RASAL2 Ras GTPase-activating protein nGAP 1 0 LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR ;;;; 150.26 1.82E-06 2587880000 1425030 1901600 1972910 1493310 2624950 1921410 2224740 2710110 1757400 1993180 TRUE FALSE FALSE 1742023.007 2123975.578 2702771.509 1574885.744 2363600.761 2022012.057 1749406.125 2045451.273 2110094.06 1496316.908 1.16420726 1.419469076 1.80628281 1.052508152 1.579612413 1.351326077 1.169141454 1.366990684 1.410191951 1 20.51298433 -12.53012043 0.256866777 2.24E-12 1.410259144 0.221756989 0.205878354 124.4505398 2.438266599 66.01522832 0.284581073 2.95E-13 12.53012043 1.410259144 LEVPAERS(ph)PR ddPTM_HeLa_A486_30min_R1 5 LEVPAERSPR 10 1 Q9UJF2-2 Q9UJF2-2 RASAL2 Ras GTPase-activating protein nGAP 1 0 LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR ;;;; 160.84 2.87E-07 2786940000 1509440 1789450 1818140 680025 2521260 1699990 2037490 2195720 1445790 1668450 TRUE FALSE FALSE 1403636.051 1647647.465 2522172.499 1583132.567 2205020.061 1490262.518 1527688.452 1695802.488 1571112.241 1250659.26 1.122316921 1.317423152 2.016674389 1.26583844 1.763086183 1.191581565 1.221506529 1.355926864 1.256227249 1 20.25425735 -6.30123039 24.75419811 1.228322421 1.503108635 0.247991255 0.252528375 749.7180667 466401.216 0.088880587 0.078386447 5.00E-07 6.30123039 0.274786214 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(ph)PPGSGR ddPTM_HeLa_A485_30min_R1 1 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGR 40 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 0 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(0.81)PPGS(0.19)GR 61.608 0.0046782 53151000 26526 31657 38185 39637 49751 40171 43594 38173 41749 53706 TRUE FALSE FALSE 32426.61719 35359.01077 52311.22051 41802.26894 44797.61575 42274.29144 34279.78577 28811.0119 50127.64136 40318.08259 0.804269824 0.877001298 1.297463003 1.036811928 1.111104817 1.048519392 0.850233532 0.714592809 1.243304199 1 15.29913941 -6.736171779 24.7470377 0.928248683 1.038540579 0.035830993 0.175934682 562.2460015 550661.9837 0.068541759 0.053069826 1.84E-07 6.736171779 0.110291897 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(ph)PPGSGR ddPTM_HeLa_A486_30min_R1 1 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGR 40 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 0 LEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPS(0.964)PPGS(0.036)GR 101.55 1.36E-05 209000000 40148 48037 39337 15703 51762 44925 48560 48568 42375 42072 TRUE FALSE FALSE 37333.83252 44230.37317 54569.33988 36557.37759 45269.5273 39382.61026 36409.77438 37510.12663 46048.09912 31536.89736 1.183814378 1.402496025 1.73033318 1.159193854 1.435446448 1.248778845 1.15451352 1.189404468 1.460134096 1 14.94475311 -6.368257571 4.914689828 1.215134694 1.390018787 0.185761091 0.180221773 0.421197081 15.75750803 0.064665986 0.056679356 4.28E-07 6.368257571 0.174884094 LEVTEIVKPS(ph)PK ddPTM_HeLa_A485_30min_R1 4 LEVTEIVKPSPK 12 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK;LEVT(0.001)EIVKPS(0.999)PK ;;; 154.13 3.74E-08 7068140000 3874820 2508550 1546470 7394220 3614900 3150290 6085790 5008380 2536770 9144160 TRUE FALSE FALSE 4736760.341 2801903.101 2118573.607 7798147.515 3254987.863 3315234.313 4785511.25 3780066.952 3045876.47 6864689.198 0.690018179 0.408161684 0.308619013 1.135979691 0.474163909 0.482940191 0.697119871 0.550653765 0.443702021 1 22.71076297 -10.16426058 4.815045113 1.000039976 0.577403326 0.252124776 0.218651021 9.31E-05 1.62E-05 0.210156978 0.050965743 6.85E-11 10.16426058 -0.42263665 LEVTEIVKPS(ph)PK ddPTM_HeLa_A486_30min_R1 4 LEVTEIVKPSPK 12 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK;LEVTEIVKPS(1)PK ;;; 147.7 7.87E-08 9629920000 4801470 4161460 1526920 3516550 3042560 5175810 7660580 6306330 3223680 9250500 TRUE FALSE FALSE 4464911.748 3831690.754 2118184.316 8186706.117 2660933.754 4537271.186 5743821.859 4870516.325 3503111.178 6934114.589 0.6439051 0.552585439 0.305472932 1.180641885 0.383745281 0.654340382 0.828342506 0.702399169 0.505199493 1 22.72528025 -14 0.228321429 2.848438413 0.604085817 0.172109269 0.232359366 290.1471392 2.905326646 248.5100595 0.402208291 1.00E-14 14 -2.244352596 LEWFSTLFPR ddPTM_HeLa_A486_30min_R1 1 LEWFSTLFPR 10 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 0 0 191.85 8.13E-10 3498300 2963.4 2779.1 2902.5 1468.4 4228.3 2931.3 2789.4 2943.5 2279.6 2893.7 FALSE FALSE TRUE 2755.680963 2558.873995 4026.425732 3418.509409 3697.947187 2569.666009 2091.462617 2273.329306 2477.197563 2169.098685 1.270426736 1.179694595 1.856266734 1.576004555 1.704831233 1.18466994 0.964208144 1.048052503 1.142040047 1 11.08287998 -6.443772718 5.02539225 1.045507062 1.518842857 0.599868971 0.186448217 0.169248368 7.558812018 0.073089925 0.06324354 3.60E-07 6.443772718 0.473335795 LFAPQQILQCS(ph)PAN ddPTM_HeLa_A486_30min_R1 2 LFAPQQILQCSPAN 14 0 K7ERV3;P04183 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 LFAPQQILQCS(1)PAN;LFAPQQILQCS(1)PAN ; 87.184 0.0016034 46690000 94225 177186 225661 49779 248220 119819 119762 135689 155589 78593 TRUE FALSE FALSE 87620.31408 163145.1361 313042.9826 115888.0277 217085.933 105036.95 89796.28089 104795.5768 169075.5798 58912.80125 1.487288199 2.769264618 5.313666571 1.967111141 3.684868627 1.782922349 1.524223581 1.778825222 2.869929391 1 15.84629353 -6.278296568 23.80210739 1.82317168 3.095368846 0.260424674 1.053558636 638.6024548 901693.7535 0.372076655 0.329156258 5.27E-07 6.278296568 1.272197166 LFCLTLHR ddPTM_HeLa_A485_30min_R1 2 LFCLTLHR 8 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 198.07 2.84E-10 107564000 134620 162422 166441 127237 193241 138610 188294 190834 117506 173456 FALSE FALSE TRUE 164565.7546 181415.84 228014.4521 134187.6351 174001.2475 145867.4053 148063.4487 144031.6623 141088.3764 130216.6114 1.263784649 1.393185079 1.751039668 1.030495523 1.336244628 1.120190456 1.137054997 1.106092846 1.083489847 1 16.99055398 -5.283996695 24.99690318 1.130845316 1.461721385 0.565422007 0.141410077 583.0438709 646099.0492 0.039758889 0.0590198 5.20E-06 5.283996695 0.330876069 LFCLTLHR ddPTM_HeLa_A486_30min_R1 2 LFCLTLHR 8 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 151.56 0.00010927 107215000 101332 120458 101095 30117 128671 93631 117692 109714 92691 114205 FALSE FALSE TRUE 94229.15008 110912.4694 140241.6914 70113.89803 112531.8834 82079.75919 88244.21678 84734.51724 100725.5305 85607.32465 1.100713642 1.295595556 1.638197339 0.819017512 1.314512325 0.958793649 1.030802179 0.989804524 1.176599443 1 16.38544662 -5.269807347 24.99642624 1.048437575 1.339911524 0.389763435 0.173821728 633.4795147 1892301.507 0.047589219 0.071889304 5.37E-06 5.269807347 0.291473948 LFCVGFTK ddPTM_HeLa_A485_30min_R1 2 LFCVGFTK 8 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09;D6RAS7;H0Y8L7;E9PFI5 D6R9B6 RPS3A 40S ribosomal protein S3a 0 0 ; ; 197.65 1.27E-09 232730000 332080 336100 374530 361660 478360 426690 491390 493900 317980 516750 FALSE FALSE TRUE 405950.0503 375403.9713 513084.2325 381416.57 430732.7988 449030.8286 386400.5122 372770.2506 381795.6693 387933.7351 1.046441734 0.967701278 1.322607925 0.983200314 1.110325707 1.157493634 0.99604772 0.960912179 0.984177541 1 18.56545071 -6.874943875 6.876103783 0.979503717 1.097344587 0.258121697 0.093703775 0.309827471 17.47568198 0.03908238 0.026278439 1.33E-07 6.874943875 0.11784087 LFCVGFTK ddPTM_HeLa_A486_30min_R1 2 LFCVGFTK 8 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09;D6RAS7;H0Y8L7;E9PFI5 D6R9B6 RPS3A 40S ribosomal protein S3a 0 0 ; ; 214.59 1.58E-14 234160000 414260 519750 430160 152262 558790 486570 567860 559860 456180 536580 FALSE FALSE TRUE 385222.5132 478563.1171 596729.4721 354473.6309 488701.3477 426541.9405 425775.4218 432392.0997 495722.0497 402216.8755 0.957748262 1.189813621 1.483601282 0.881299748 1.215019502 1.060477485 1.05857175 1.075022273 1.232474518 1 18.61761409 -5.284928475 24.9993417 1.082403649 1.208330467 0.143971787 0.150782284 1603.58692 1706687.655 0.042022664 0.062366687 5.19E-06 5.284928475 0.125926818 LFDDEAS(ph)VDEPR ddPTM_HeLa_A486_30min_R1 1 LFDDEASVDEPR 12 0 A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;Q8NI35-5 A0A0U1RR46 INADL InaD-like protein 1 0 LFDDEAS(1)VDEPR 155.14 1.61E-06 0 201330 224690 173150 89982 251410 212030 244610 253170 161160 247800 TRUE FALSE FALSE 187217.8067 206884.7461 240198.3171 209482.6434 219875.8135 185871.8944 183405.9908 195528.7177 175129.4786 185749.2671 1.007906032 1.113784993 1.293131978 1.127771036 1.18372372 1.000660176 0.987384735 1.052648663 0.942827292 1 17.50299699 -6.269823972 23.82998949 0.999412231 1.15075785 0.524541943 0.07059866 279.3238407 793868.2936 0.025478927 0.022865488 5.37E-07 6.269823972 0.151345619 LFDEEEDS(ph)SEKLFDDSDER ddPTM_HeLa_A486_30min_R1 1 LFDEEEDSSEKLFDDSDER 19 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFDEEEDS(0.868)S(0.127)EKLFDDS(0.005)DER 41.76 0.033806 30759000 11547 12990 7521.4 7819.5 12072 15317 16528 10481 9987.5 23394 TRUE FALSE FALSE 10737.61493 11960.62509 10433.88751 18204.19118 10557.81719 13427.34427 12392.51958 8094.705099 10853.22454 17535.99013 0.612318714 0.682061577 0.594998482 1.038104552 0.602065644 0.765702089 0.706690611 0.461605249 0.618911419 1 14.09803127 -7.028093173 24.9068568 0.640984605 0.719807379 0 0.175326719 2714.307259 2406440.769 0.079301198 0.045922239 9.37E-08 7.028093173 0.078822773 LFDHPES(ph)PTPNPTEPLFLAQAEVYK ddPTM_HeLa_A485_30min_R1 4 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK;LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK;LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK;LFDHPES(0.499)PT(0.499)PNPT(0.001)EPLFLAQAEVYK ;;; 276.46 2.41E-75 698040000 203126 208069 179220 231454 254492 233906 322178 289050 198998 356849 TRUE FALSE FALSE 248310.6779 232400.8596 245520.936 244097.7459 229153.8829 246152.9565 253342.0383 218160.0343 238935.0733 267893.1116 0.926902063 0.867513383 0.916488425 0.911175896 0.855392964 0.918847652 0.945683287 0.814354774 0.891904506 1 18.03129796 -11.53228682 2.117185774 2.428617331 0.893360152 0.423011264 0.037038133 2053417.317 139446.2001 14131302.21 0.00920223 2.94E-12 11.53228682 -1.535257179 LFDHPES(ph)PTPNPTEPLFLAQAEVYK ddPTM_HeLa_A486_30min_R1 2 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LFDHPES(0.497)PT(0.497)PNPT(0.005)EPLFLAQAEVYK;LFDHPES(0.5)PT(0.5)PNPTEPLFLAQAEVYK ; 164.55 5.92E-14 160429000 109968 82056 60760.9 53724.2 119941 113579 125294 118839 94602 134420 TRUE FALSE FALSE 102259.8111 75553.58372 84289.14771 125072.6527 104896.8814 99566.77777 93944.11598 91781.95394 102802.1775 100760.3571 1.014881388 0.749834418 0.836530856 1.241288303 1.041053093 0.988154277 0.932351956 0.910893496 1.020264125 1 16.62056861 LFDHPESPT(ph)PNPTEPLFLAQAEVYK ddPTM_HeLa_A486_30min_R1 2 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LFDHPES(0.409)PT(0.59)PNPT(0.002)EPLFLAQAEVYK;LFDHPES(0.116)PT(0.884)PNPTEPLFLAQAEVYK ; 206.96 1.72E-28 458430000 161014 156279 107728 69330 170332 172300 193412 183840 138298 216960 TRUE FALSE FALSE 149727.7501 143894.8829 149443.1667 161403.7437 148967.3723 151043.3778 145018.2719 141983.6452 150285.782 162631.8038 0.920654795 0.884789319 0.918904932 0.992448832 0.91597934 0.928744405 0.891696879 0.873037388 0.924086055 1 17.31124989 -6.648651624 0.00481387 1.845724678 9.05E-08 0.130307571 0.037013519 25967.09756 67.80871666 12885.1769 13110.04165 2.25E-07 6.648651624 -1.845724587 LFDTPHT(ph)PK ddPTM_HeLa_A485_30min_R1 6 LFDTPHTPK 9 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK ;;;;; 182.35 4.13E-08 3422990000 5854990 5641000 4266080 6484280 7620740 6139840 8186320 8150330 4790100 8384800 TRUE FALSE FALSE 7157412.326 6300665.88 5844280.518 6838499.797 6861992.368 6461312.528 6437245.856 6151448.788 5751429.133 6294623.671 1.137067552 1.0009599 0.928455905 1.086403279 1.090135444 1.026481147 1.022657778 0.977254417 0.913705002 1 22.5856887 -7.25143497 2.518248671 0.954203408 1.040790271 0.292484474 0.056627129 0.408363062 5.019917378 0.03797195 0.016778353 5.60E-08 7.25143497 0.086586863 LFDTPHT(ph)PK ddPTM_HeLa_A486_30min_R1 6 LFDTPHTPK 9 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK;LFDTPHT(1)PK ;;;;; 181.66 4.32E-08 3196100000 5923170 5572720 3305830 2115410 5898190 5967940 6806940 6695340 4114900 7013300 TRUE FALSE FALSE 5507986.37 5131117.372 4585935.909 4924781.387 5158384.012 5231676.24 5103771.616 5170957.24 4471582.845 5257124.031 1.047718551 0.976031256 0.872327889 0.936782423 0.981217864 0.99515937 0.970829599 0.983609519 0.85057587 1 22.32584234 LFDVCGS(ph)QDFESDLDR ddPTM_HeLa_A485_30min_R1 3 LFDVCGSQDFESDLDR 16 0 E7EN38;A0A494C1B7;A0A1W2PQ90;Q92878-3;Q92878;Q92878-2 E7EN38 RAD50 DNA repair protein RAD50 1 0 LFDVCGS(0.999)QDFES(0.001)DLDR;LFDVCGS(0.999)QDFES(0.001)DLDR;LFDVCGS(1)QDFESDLDR ;; 212.72 7.07E-26 78668000 71240 67094 79790 101370 78454 56797 69742 51270 74972 116177 TRUE FALSE FALSE 87087.09222 74940.05966 109307.6413 106907.5864 70642.84429 59770.8031 54841.05196 38695.95211 90018.19272 87216.21198 0.998519544 0.859244606 1.253294988 1.225776538 0.809973773 0.685317577 0.628794243 0.443678431 1.032126834 1 16.41230871 -5.913568769 5.604769694 0.718374387 1.078508828 0.389200799 0.19228769 0.199619109 10.07953981 0.060921172 0.069320157 1.22E-06 5.913568769 0.360134441 LFDVCGS(ph)QDFESDLDR ddPTM_HeLa_A486_30min_R1 3 LFDVCGSQDFESDLDR 16 0 E7EN38;A0A494C1B7;A0A1W2PQ90;Q92878-3;Q92878;Q92878-2 E7EN38 RAD50 DNA repair protein RAD50 1 0 LFDVCGS(0.988)QDFES(0.012)DLDR;LFDVCGS(1)QDFESDLDR;LFDVCGS(1)QDFESDLDR ;; 239.18 2.01E-41 143292000 94165 144620 103411 37787 106407 110093 105464 105114 113009 116732 TRUE FALSE FALSE 87564.51977 133159.7845 143454.5086 87970.04565 93060.44185 96510.845 79075.79172 81181.83682 122804.7111 87501.5474 1.000719671 1.521799196 1.639451106 1.005354171 1.063529099 1.10296158 0.903707352 0.927776013 1.403457593 1 16.41702091 -5.28342028 24.55985747 1.050763784 1.400770932 0.36152359 0.200082034 627.8295113 701489.5315 0.056228358 0.083482889 5.21E-06 5.28342028 0.350007148 LFDVSEITSAAMVHSLPTAVPES(ph)PR ddPTM_HeLa_A485_30min_R1 2 LFDVSEITSAAMVHSLPTAVPESPR 25 0 A0A3B3ISF0;Q659C4-9;Q659C4;Q659C4-2;D6RJB0 A0A3B3ISF0 LARP1B La-related protein 1B 1 0 LFDVSEITSAAMVHSLPTAVPES(1)PR;LFDVSEITSAAMVHSLPTAVPES(1)PR ; 394.91 2.30E-172 623570000 200674 285590 278280 179754 351990 273370 304880 324930 248410 287910 TRUE FALSE FALSE 245313.239 318987.2662 381227.3522 189573.5059 316944.6397 287683.2305 239739.8974 245240.408 298263.6084 216139.3356 1.134977297 1.475840875 1.763803665 0.877089334 1.466390367 1.331008211 1.109191424 1.134640334 1.379959865 1 17.72160213 -8.290681433 0.185447511 0.872046626 1.469070748 0.141168406 0.232647123 11.52550824 1.288720722 2.224695555 1.187027505 5.12E-09 8.290681433 0.597024123 LFDVSEITSAAMVHSLPTAVPES(ph)PR ddPTM_HeLa_A486_30min_R1 2 LFDVSEITSAAMVHSLPTAVPESPR 25 0 A0A3B3ISF0;Q659C4-9;Q659C4;Q659C4-2;D6RJB0 A0A3B3ISF0 LARP1B La-related protein 1B 1 0 LFDVSEITSAAMVHSLPTAVPES(1)PR;LFDVSEITSAAMVHSLPTAVPES(1)PR ; 263.1 7.32E-62 485780000 194839 237460 245780 61960 301150 212980 247860 271750 227650 198367 TRUE FALSE FALSE 181181.7922 218642.8048 340952.5982 144246.0113 263376.9589 186704.693 185842.8064 209878.4573 247382.8853 148694.612 1.218482565 1.470415113 2.292972109 0.9700823 1.771260944 1.25562514 1.249828786 1.411473182 1.663697708 1 17.18199285 -5.318442614 24.9999981 1.360587508 1.64161851 0.154918855 0.346632071 577.770957 253392.6451 0.095849193 0.142167392 4.80E-06 5.318442614 0.281031002 LFEDDDS(ph)NEK ddPTM_HeLa_A486_30min_R1 1 LFEDDDSNEK 10 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEDDDS(1)NEK 94.09 0.0010055 0 148330 130230 50737 43508 61536 119060 109640 94788 103070 233550 TRUE FALSE FALSE 137932.833 119910.1005 70383.72518 101288.8228 53817.58108 104371.5877 82206.91235 73206.84161 112004.1906 175067.5598 0.78788345 0.68493615 0.402037506 0.578569912 0.307410357 0.596178914 0.469572503 0.418163375 0.639776956 1 17.41755225 -8.05749991 8.69588299 0.999999252 0.525885526 0.525260667 0.133979125 1.308046043 197.8551924 0.13216348 0.034163113 8.76E-09 8.05749991 -0.474113726 LFEDDDS(ph)NEKLFDEEEDS(ph)SEK ddPTM_HeLa_A486_30min_R1 1 LFEDDDSNEKLFDEEEDSSEK 21 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 2 0 LFEDDDS(1)NEKLFDEEEDS(0.52)S(0.48)EK 70.799 0.0064102 16211000 28799 20373 9614.5 19660 12634 26685 31334 25657 15502 72396 TRUE FALSE FALSE 26780.33882 18758.56928 13337.49189 45769.47356 11049.32591 23392.87601 23493.90178 19815.46119 16845.72584 54267.57038 0.493486969 0.345668125 0.245772785 0.843403772 0.203608266 0.431065475 0.432927098 0.365143695 0.310419754 1 15.7278027 -10.62570241 4.170538721 1.016258543 0.408296383 0.528566311 0.167742783 0.024397876 0.002189659 0.156265183 0.037791954 2.37E-11 10.62570241 -0.607962159 LFEDDDS(ph)NEKLFDEEEDSS(ph)EKLFDDSDER ddPTM_HeLa_A486_30min_R1 1 LFEDDDSNEKLFDEEEDSSEKLFDDSDER 29 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 2 0 LFEDDDS(0.994)NEKLFDEEEDS(0.12)S(0.883)EKLFDDS(0.003)DER 76.06 0.002626 43652000 36268 28682 11326 32884 21658 48941 51211 47024 27211 110200 TRUE FALSE FALSE 33725.80049 26409.13386 15711.73052 76555.61387 18941.45169 42903.15702 38397.46615 36317.66173 29569.67139 82605.20272 0.408276953 0.319703033 0.190202675 0.926765038 0.229300953 0.519375967 0.464831087 0.439653442 0.357963789 1 16.33394503 -10.24978094 3.303052877 1.001877298 0.431119146 0.441572097 0.192800882 77470786.31 113169491.1 1484885.331 0.048092462 5.63E-11 10.24978094 -0.570758152 LFEDDDS(ph)NEKLFDEEEDSSEKLFDDSDER ddPTM_HeLa_A485_30min_R1 3 LFEDDDSNEKLFDEEEDSSEKLFDDSDER 29 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEDDDS(1)NEKLFDEEEDSSEKLFDDSDER;LFEDDDS(1)NEKLFDEEEDSSEKLFDDSDER;LFEDDDS(1)NEKLFDEEEDSSEKLFDDSDER ;; 228.34 3.57E-39 162098000 94797 52660 33528.2 195345 68187 68169 110140 68630 47322 227743 TRUE FALSE FALSE 115884.2656 58818.12892 45931.6764 206016.2027 61398.06286 71738.22343 86607.68924 51798.38489 56819.09134 170970.8614 0.677801262 0.344024288 0.268652073 1.204978445 0.359114193 0.419593274 0.506564034 0.302966157 0.332332018 1 17.38339094 -10.35258468 5.930087463 1.000073874 0.489822638 0.250384695 0.264381002 0.000259626 2.83E-05 0.257382278 0.062415397 4.44E-11 10.35258468 -0.510251236 LFEDDDS(ph)NEKLFDEEEDSSEKLFDDSDER ddPTM_HeLa_A486_30min_R1 2 LFEDDDSNEKLFDEEEDSSEKLFDDSDER 29 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEDDDS(1)NEKLFDEEEDSSEKLFDDSDER;LFEDDDS(1)NEKLFDEEEDSSEKLFDDSDER ; 275.48 1.72E-77 99811000 63224 48494 13924 46110 25575.2 62867 96964 70909 32775 149395 TRUE FALSE FALSE 58792.32409 44651.15883 19315.7457 107346.4103 22367.31994 55111.10872 72702.58162 54764.56863 35615.96339 111985.5196 0.524999342 0.398722612 0.172484316 0.958574025 0.199734037 0.492127098 0.649214129 0.489032589 0.318040792 1 16.77295267 -11.01512434 2.638067171 1.581430423 0.469666931 0.355014261 0.215502522 25323723.5 10372107.49 89229630.07 0.051590427 9.66E-12 11.01512434 -1.111763492 LFEDDDSNEKLFDEEEDS(ph)SEKLFDDSDER ddPTM_HeLa_A486_30min_R1 1 LFEDDDSNEKLFDEEEDSSEKLFDDSDER 29 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEDDDSNEKLFDEEEDS(0.5)S(0.5)EKLFDDSDER 122.63 4.96E-06 20580000 8281.6 7768.9 2177.9 6543.1 3780.5 8925 10377 8469.5 5767 16145 TRUE FALSE FALSE 7701.102606 7153.26407 3021.241206 15232.66747 3306.314438 7823.924243 7780.564843 6541.179738 6266.888203 12102.18691 0.636339751 0.59107202 0.249644236 1.25867065 0.27319975 0.646488465 0.642905691 0.540495679 0.517831054 1 13.56298015 -11.16537384 2.280121905 1.962039924 0.596247596 0.178465984 0.260555337 13031437.4 2835633.847 64792475.77 0.061984217 6.83E-12 11.16537384 -1.365792329 LFEES(ph)DDKEDEDADGKEVEDADEK ddPTM_HeLa_A485_30min_R1 1 LFEESDDKEDEDADGKEVEDADEK 24 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEES(1)DDKEDEDADGKEVEDADEK 204.35 5.66E-29 301110000 907750 437540 250120 2601000 565950 441320 1048400 399970 217440 2846100 TRUE FALSE FALSE 1109675.856 488706.4969 342649.7964 2743086.044 509602.0308 464426.8328 824400.7754 301876.7304 261078.2135 2136619.649 0.519360503 0.228728823 0.160370048 1.283843873 0.238508539 0.217365235 0.385843487 0.14128707 0.12219218 1 21.02689868 -10.28830499 5.148159366 1.000136792 0.369071952 0.251379595 0.327997803 0.000526734 7.28E-05 0.324835079 0.078767213 5.15E-11 10.28830499 -0.63106484 LFEES(ph)DDKEDEDADGKEVEDADEK ddPTM_HeLa_A486_30min_R1 2 LFEESDDKEDEDADGKEVEDADEK 24 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEES(1)DDKEDEDADGKEVEDADEK;LFEES(1)DDKEDEDADGKEVEDADEK ; 74.404 0.003408 694760000 183875 151085 39420 219721 69361 238810 273537 206612 92675 812010 TRUE FALSE FALSE 170986.312 139112.4744 54684.4797 511521.5921 60661.09661 209348.0502 205095.1494 159570.9579 100708.1436 608677.4107 0.280914503 0.228548771 0.08984148 0.840382086 0.099660503 0.343939247 0.336952129 0.262160144 0.165454051 1 19.2153183 -10.5577467 2.980938935 1.033658096 0.29838362 0.525628126 0.201114489 118386098.2 130543016.6 31871663.63 0.0485554 2.77E-11 10.5577467 -0.735274476 LFEHYYQELK ddPTM_HeLa_A486_30min_R1 1 LFEHYYQELK 10 0 Q08J23-2;Q08J23;A0A140T9Y7 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 0 97.456 0.013755 0 145050 159870 96998 92144 184810 166240 210500 217810 132730 213500 FALSE FALSE TRUE 134882.744 147201.319 134558.2233 214515.8887 161629.4065 145730.999 157830.6736 168219.4178 144235.1433 160038.2103 0.842815873 0.919788585 0.840788103 1.340404196 1.009942602 0.910601279 0.986206189 1.051120338 0.901254413 1 17.28805688 LFFHVK ddPTM_HeLa_A485_30min_R1 2 LFFHVK 6 0 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 0 0 ; ; 87.758 0.018503 32408000 52445 62735 55500 57450 78819 65947 75787 86879 59681 80923 FALSE FALSE TRUE 64111.20932 70071.31253 76031.75955 60588.34803 70971.50361 69399.88295 59594.48833 65571.78903 71658.42927 60750.38538 1.055321854 1.153429926 1.251543658 0.997332735 1.168247792 1.142377658 0.980973009 1.079364166 1.179555139 1 15.89060594 LFFHVK ddPTM_HeLa_A486_30min_R1 2 LFFHVK 6 0 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 0 0 ; ; 87.758 0.018503 37786000 66060 77492 52625 22847 72280 69548 74399 75901 60893 80655 FALSE FALSE TRUE 61429.53513 71351.2517 73002.80935 53188.97062 63213.96842 60967.87487 55783.58329 58619.99921 66171.25427 60458.46302 1.016061806 1.180169791 1.20748702 0.879760549 1.045576835 1.008425815 0.922676173 0.969591291 1.094491176 1 15.88365668 -5.252102024 24.99951619 0.987826483 1.139132564 0.457052808 0.072830715 588.6494126 1576026.697 0.019631633 0.033432527 5.60E-06 5.252102024 0.151306081 LFFLQVK ddPTM_HeLa_A485_30min_R1 2 LFFLQVK 7 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y5P0;E9PQ82;E9PNV3;P35241-3;E7EQR4;P15311;P26038;V9GZ54 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 ; ; 172.15 0.00043041 619650000 942780 958200 827670 1004730 1162920 1079880 1472550 1352730 841790 1640770 FALSE FALSE TRUE 1152498.158 1070253.155 1133859.575 1059615.856 1047135.602 1136420.847 1157927.663 1020970.847 1010729.532 1231756.235 0.935654414 0.868883895 0.9205227 0.860248015 0.850115933 0.922602066 0.940062351 0.828874105 0.820559704 1 20.23228534 -4.247692494 23.06773956 0.886188485 0.93565451 0.057231796 0.053128056 2337.379189 3921999.297 0.012927844 0.231436146 5.65E-05 4.247692494 0.049466025 LFFLQVK ddPTM_HeLa_A486_30min_R1 3 LFFLQVK 7 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;A0A2R8Y5P0;E9PQ82;E9PNV3;P35241-3;E7EQR4;P15311;P26038;V9GZ54 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 ;; ;; 187.48 2.18E-05 523470000 997081 1126447 903183 455625 1564180 1193456 1429491 1222379 1111612 1386891 FALSE FALSE TRUE 927190.7708 1037183.237 1252919.646 1060718.026 1367985.959 1046219.533 1071817.232 944069.986 1207967.423 1039604.466 0.891868784 0.997671009 1.205188787 1.020309224 1.315871568 1.006363061 1.030985598 0.908104973 1.161949051 1 19.98760331 -9.828834484 13.11635978 1.000002709 1.061747952 0.01982832 0.125497519 0 0 0.121775427 0.029534879 1.48E-10 9.828834484 0.061745243 LFFVGSR ddPTM_HeLa_A485_30min_R1 1 LFFVGSR 7 0 Q01650;H0YJ95;A0A0C4DGL4;G3V4Z6;Q9UM01;Q92536 Q01650 SLC7A5;SLC7A7;SLC7A6 Large neutral amino acids transporter small subunit 1;Y+L amino acid transporter 1;Y+L amino acid transporter 2 0 0 114.72 0.015601 16834000 15209 14655 14873 15733 16176 13697 18626 19754 15630 29976 FALSE FALSE TRUE 18592.18958 16368.77477 20375.14162 16592.45395 14565.46064 14414.15374 14646.40294 14909.30053 18766.79763 22503.53487 0.826189738 0.727386825 0.905419604 0.73732656 0.64725212 0.640528425 0.65084899 0.662531492 0.833948877 1 14.45786402 -8.036144926 4.743647178 0.999847865 0.723985143 0.525841056 0.081030304 0.174540284 13.11237207 0.086472104 0.022573594 9.20E-09 8.036144926 -0.275862722 LFFWMQEPK ddPTM_HeLa_A485_30min_R1 1 LFFWMQEPK 9 0 Q16186 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 0 0 121.62 0.0039129 5201400 4838.8 4870.6 5260.2 7818.4 9279.7 5422.7 8117.7 7294 4602.1 9716.7 FALSE FALSE TRUE 5915.174366 5440.174301 7206.166875 8245.499395 8355.780485 5706.624187 6383.287079 5505.135063 5525.699257 7294.505513 0.810908204 0.74579069 0.987889702 1.130371261 1.145489639 0.782318168 0.875081535 0.754696128 0.757515262 1 12.83259447 LFHFLGIFLAK ddPTM_HeLa_A485_30min_R1 2 LFHFLGIFLAK 11 0 A0A087X2H1;Q9ULT8;H0YJD4 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 0 0 ; ; 107.15 0.0018772 4542000 24463.3 11423.4 10532 12059.4 13599.9 7192.7 17009.4 14843.6 6568.6 18708.5 FALSE FALSE TRUE 29905.07669 12759.26726 14428.22507 12718.17449 12245.8462 7569.29865 13375.20274 11203.18383 7886.857769 14044.81525 2.129260951 0.908468145 1.027299029 0.905542313 0.871912231 0.538938997 0.952323152 0.79767399 0.561549414 1 13.77775003 -2.190441792 1.200889548 0.801255391 199.9999964 0.849186163 0.162377615 81.86357631 1.027201541 0.047224743 43984.97604 0.006449978 2.190441792 199.198741 up LFHFLGIFLAK ddPTM_HeLa_A486_30min_R1 2 LFHFLGIFLAK 11 0 A0A087X2H1;Q9ULT8;H0YJD4 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 0 0 ; ; 120.12 0.00084523 2473290 7161.8 9340.8 6922.6 8048.9 10749.6 9578.2 13772.1 12149.3 6348 12247.8 FALSE FALSE TRUE 6659.794804 8600.600989 9603.216114 18738.24597 9401.284932 8396.539068 10326.17491 9383.169607 6898.249751 9180.87116 0.725399005 0.93679574 1.04600271 2.041009578 1.024007936 0.914568881 1.124748919 1.022034777 0.751372025 1 13.16441534 -5.977728775 24.99978128 0.973529167 1.205964563 0.09172072 0.332420533 629.5486545 706674.3055 0.110263742 0.125019289 1.05E-06 5.977728775 0.232435396 LFIGGLSFETTDESLR ddPTM_HeLa_A485_30min_R1 2 LFIGGLSFETTDESLR 16 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 238.2 2.50E-32 45687000 14810 19286.2 20118 17278 25983.3 19708.4 20480.7 24117.8 18249.2 25461.1 FALSE FALSE TRUE 18104.43341 21541.55332 27560.48538 18221.85339 23396.31142 20740.30135 16104.83113 18202.87173 21911.64705 19114.11635 0.94717606 1.126997081 1.441891683 0.953319163 1.224033117 1.085077697 0.842562159 0.952326093 1.146359405 1 14.22235088 -6.532836786 24.55568285 0.978836308 1.145578512 0.192471439 0.147788499 270.1929607 666264.7389 0.056372654 0.043720373 2.93E-07 6.532836786 0.166742205 LFIGGLSFETTDESLR ddPTM_HeLa_A486_30min_R1 1 LFIGGLSFETTDESLR 16 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 151.1 3.48E-08 18703000 5423.6 6164.1 5971.4 3543 8632.1 6793.8 6824.1 7702.3 5409.8 6670.7 FALSE FALSE TRUE 5043.433647 5675.634267 8283.686 8248.283053 7549.381527 5955.65003 5116.638002 5948.65443 5878.72582 5000.313301 1.008623529 1.135055731 1.656633395 1.649553249 1.509781702 1.191055374 1.023263483 1.189656342 1.175671496 1 12.28780278 -6.425876713 5.118535465 1.11200192 1.40526307 0.330629874 0.198787058 0.308470235 12.66838422 0.080524505 0.070055932 3.75E-07 6.425876713 0.293261149 LFIGGLSFETTEESLR ddPTM_HeLa_A485_30min_R1 3 LFIGGLSFETTEESLR 16 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;; ;; 390.56 2.48E-160 99099000 30058 31550.2 34881.3 27309.9 40132.5 30956.5 36042.8 37378.9 33301.4 43396.2 FALSE FALSE TRUE 36744.2984 35239.72144 47785.3444 28801.77068 36136.76739 32577.33447 28341.96134 28211.66617 39984.68552 32578.32599 1.127875583 1.08169221 1.466783297 0.884077675 1.109227264 0.999969565 0.86996371 0.865964266 1.227340089 1 14.99162485 -5.290262954 24.99931303 0.988114688 1.211074697 0.357602221 0.141750419 768.5490088 666577.5211 0.03959012 0.058733075 5.13E-06 5.290262954 0.222960008 LFIGGLSFETTEESLR ddPTM_HeLa_A486_30min_R1 2 LFIGGLSFETTEESLR 16 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 153.38 2.00E-08 36050000 14524.8 21526 13835.7 11447.2 26504 20413.7 26255 25675 17611.2 19923.3 FALSE FALSE TRUE 13506.68653 19820.20136 19193.25357 26649.66011 23179.62118 17895.26525 19685.7213 19829.36298 19137.753 14934.376 0.904402469 1.327152963 1.285172783 1.784450861 1.552098406 1.198259991 1.318148231 1.327766422 1.281456486 1 13.86634934 -8.579498663 0.854003714 0.997521909 1.359966961 0.17866382 0.213975489 3.797281223 4.039295634 0.240653074 0.075496501 2.63E-09 8.579498663 0.362445051 LFLIDFGLAK ddPTM_HeLa_A485_30min_R1 2 LFLIDFGLAK 10 0 U3KQ83;D6REM4;U3KPX3;A0A590UJ43;P48729-3;Q8N752;P48729 U3KQ83 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like 0 0 ; ; 159.11 2.32E-05 2488300 8887.2 10401.1 8714.5 9221.3 11478.2 8404.5 12225.3 11451.8 9011.8 17276.6 FALSE FALSE TRUE 10864.12698 11617.41817 11938.35619 9725.036269 10335.39011 8844.546624 9613.264783 8643.228094 10820.3856 12969.86157 0.837644019 0.895724145 0.920469052 0.749818047 0.796877441 0.681930688 0.741200261 0.666408662 0.834271479 1 13.66287546 -5.267889589 24.45097118 0.762414028 0.885723581 0.192921644 0.090950812 468.095164 1774421.605 0.024057007 0.036687552 5.40E-06 5.267889589 0.123309553 LFLIDFGLAK ddPTM_HeLa_A486_30min_R1 1 LFLIDFGLAK 10 0 U3KQ83;D6REM4;U3KPX3;A0A590UJ43;P48729-3;Q8N752;P48729 U3KQ83 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like 0 0 147.51 0.00090939 1765500 5120.5 4514.3 2913 1617 4531.7 3589.5 4837.8 4550.3 3849.4 5409 FALSE FALSE TRUE 4761.579392 4156.570427 4040.991613 3764.457719 3963.29193 3146.663985 3627.331271 3514.296022 4183.069091 4054.551193 1.174378905 1.025161659 0.996655714 0.928452383 0.977492142 0.776081947 0.894632007 0.866753398 1.031697195 1 11.98532651 -4.00358452 0.8466464 0.910110765 1.424532758 0.543511661 0.069520294 2.512730575 1.045728351 0.024920955 1.332502044 9.92E-05 4.00358452 0.514421993 LFMLLLEK ddPTM_HeLa_A485_30min_R1 3 LFMLLLEK 8 0 F5GY55;Q16531 F5GY55 DDB1 DNA damage-binding protein 1 0 0 ;; ;; 119.21 0.0040819 12835600 49846 50610 53992 55339 54758 57270 65355 63301 45776 69539 FALSE FALSE TRUE 60934.07073 56528.39925 73965.88759 58362.02944 49306.10125 60268.56864 51391.37035 47776.3305 54962.82332 52204.20707 1.16722529 1.082832255 1.416856835 1.117956439 0.944485206 1.154477235 0.98442967 0.915181614 1.052842796 1 15.67187846 -5.524155187 17.92607949 1.012306771 1.218199071 0.487709563 0.098592428 1.02626629 14392.13378 0.02899971 0.038087151 2.99E-06 5.524155187 0.2058923 LFMLLLEK ddPTM_HeLa_A486_30min_R1 2 LFMLLLEK 8 0 F5GY55;Q16531 F5GY55 DDB1 DNA damage-binding protein 1 0 0 ; ; 127.84 0.0033286 9251900 25254.3 26326 16324.4 8805 21881.1 25755 27590 26415 23342.1 32019 FALSE FALSE TRUE 23484.10398 24239.83188 22645.64486 20498.48498 19136.5684 22577.60996 20686.69018 20400.88114 25365.41202 24001.23399 0.978454024 1.009941068 0.943520024 0.854059628 0.797316022 0.940685382 0.861901109 0.84999301 1.056837829 1 14.55082096 -4.985606787 4.884116336 0.897060494 0.992129301 0.164524945 0.073367791 0.269330691 17.71567633 0.019389152 0.039842287 1.03E-05 4.985606787 0.095068807 LFMVLWLK ddPTM_HeLa_A485_30min_R1 2 LFMVLWLK 8 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 ; ; 145.87 0.00020693 22806000 115882 96471 89895 102301 152393 109734 197379 156053 61592 201188 FALSE FALSE TRUE 141659.5511 107752.4443 123150.9013 107889.4446 137220.2178 115479.5026 155207.3642 117780.7571 73952.94944 151035.5342 0.937922005 0.713424459 0.815377004 0.714331532 0.908529364 0.764584991 1.027621513 0.779821502 0.489639407 1 17.20452849 -9.986689289 5.177931444 1.000001137 0.799336638 0.161851312 0.139859893 1.80E-06 3.53E-07 0.132987827 0.032254103 1.03E-10 9.986689289 -0.200664498 LFMVLWLK ddPTM_HeLa_A486_30min_R1 1 LFMVLWLK 8 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 146.21 0.00020322 15091000 36216 55358 40199 44040 73958 64302 77643 63236 37032 61450 FALSE FALSE TRUE 33677.44542 50971.23047 55765.12937 102527.3457 64681.49801 56369.07301 58215.90018 48838.54323 40241.96358 46062.52003 0.731124684 1.106566259 1.210640003 2.225830146 1.404211015 1.223751392 1.263845316 1.060266421 0.873637907 1 15.49130572 -7.257375164 1.765515397 0.934037111 1.349011125 0.158925584 0.354290449 0.748479966 4.282428105 0.292980063 0.116141441 5.53E-08 7.257375164 0.414974014 LFNAIIHR ddPTM_HeLa_A485_30min_R1 3 LFNAIIHR 8 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;E9PKG0;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;; ;; 147.52 0.00019432 180609000 105637 145805 130544 89320 152251 130303 146633 163561 116554 130373 FALSE FALSE TRUE 129135.5862 162855.6264 178837.658 94199.32543 137092.3559 137125.4636 115303.6617 123447.4083 139945.3187 97873.41044 1.319414391 1.66394147 1.827234355 0.962460846 1.400710931 1.401049202 1.17808975 1.261296687 1.42986045 1 16.57862935 -1.000000564 0.049231408 0.328800499 3.233050862 0.261342106 0.218881664 689.5067216 2.569993582 36.14688926 153.137192 0.09999987 1.000000564 2.904250364 LFNAIIHR ddPTM_HeLa_A486_30min_R1 3 LFNAIIHR 8 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;E9PKG0;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;; ;; 130.34 0.0006304 134064000 100087 113562 99675 36173.2 156851 104219 99471 114040 103400 105299 FALSE FALSE TRUE 93071.41815 104562.9335 138271.8294 84213.03769 137177.285 91361.5194 74582.3037 88075.58148 112362.7953 78931.44502 1.179142459 1.324731018 1.751796503 1.06691367 1.737929478 1.157479372 0.944899763 1.115849095 1.423549198 1 16.26831254 -6.489690458 24.7965998 1.119365816 1.411019517 0.272610807 0.232346096 769.5042957 574935.3194 0.079444158 0.070010684 3.24E-07 6.489690458 0.291653702 LFNHLSAVSESIQALGWVAMAPKPGPYVK ddPTM_HeLa_A485_30min_R1 1 LFNHLSAVSESIQALGWVAMAPKPGPYVK 29 1 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 186.13 4.69E-33 20752000 19906 28033 21603 6936.4 30499 21504 33760 38586 12942 19166 FALSE FALSE TRUE 24334.02103 31311.2155 29594.84868 7315.317968 27462.41247 22629.91619 26546.90021 29122.723 15539.34069 14388.26892 1.691240354 2.176162793 2.056873473 0.508422383 1.908666888 1.572803254 1.845037811 2.024060236 1.080000712 1 13.81260541 -11.53228154 0.211062236 1.16E-11 1.798240471 0.169630997 0.473933584 87.6395137 2.221231019 41.96561686 1.132123729 2.94E-12 11.53228154 1.798240471 LFNHLSAVSESIQALGWVAMAPKPGPYVK ddPTM_HeLa_A486_30min_R1 2 LFNHLSAVSESIQALGWVAMAPKPGPYVK 29 1 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 ; ; 163.46 8.61E-26 16283800 16278.4 21002.1 18911.4 6578 27687.4 19794.1 24051.6 20419 22468.7 17893.7 FALSE FALSE TRUE 15137.36822 19337.81711 26234.40054 15313.91643 24214.58812 17352.10519 18033.63529 15770.03944 24416.30501 13413.00105 1.128559385 1.441721881 1.955893423 1.141721854 1.805307256 1.293678061 1.344489217 1.175727891 1.820346164 1 13.71134444 LFPADT(ph)SPSTATK ddPTM_HeLa_A485_30min_R1 3 LFPADTSPSTATK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 LFPADT(0.497)S(0.497)PS(0.006)T(0.001)ATK;LFPADT(0.586)S(0.408)PS(0.005)T(0.001)ATK;LFPADT(0.682)S(0.314)PS(0.004)T(0.001)ATK ;; 151.78 2.49E-07 722247000 1062720 1124160 882480 1347140 1497510 1309810 1600290 1766230 1072420 1782920 TRUE FALSE FALSE 1299118.398 1255620.733 1208946.075 1420730.847 1348412.646 1378389.626 1258374.968 1333059.323 1287644.857 1338470.856 0.970598943 0.938100914 0.903229285 1.061458186 1.007427723 1.029824161 0.940158661 0.995956929 0.962026817 1 20.3521543 -5.243658486 24.99965423 0.998496875 0.937388837 0.40304254 0.034695397 889.1413199 1250116.966 0.009703839 0.016760074 5.71E-06 5.243658486 -0.061108039 LFPADT(ph)SPSTATK ddPTM_HeLa_A486_30min_R1 1 LFPADTSPSTATK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 LFPADT(0.769)S(0.228)PS(0.003)TATK 141.58 5.60E-07 478110000 1037900 1061100 684660 428830 1070800 1131400 1261400 1243400 834100 1226600 TRUE FALSE FALSE 965148.5697 977014.5715 949778.6878 998337.9119 936490.2792 991819.3712 945784.3783 960304.9632 906400.4596 919451.3762 1.0497005 1.062606024 1.032984139 1.085797398 1.018531598 1.0787078 1.028639907 1.044432569 0.985805757 1 19.81041376 -7.714594106 5.447214919 0.992686027 1.050753174 0.560667326 0.020300411 0.118146675 7.77840602 0.014009895 0.004786541 1.93E-08 7.714594106 0.058067147 LFPADTS(ph)PSTATK ddPTM_HeLa_A485_30min_R1 1 LFPADTSPSTATK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 LFPADT(0.344)S(0.652)PS(0.004)TATK 194.3 7.37E-18 541180000 889440 849600 747960 1011400 1157800 984870 1275100 1363400 948890 1379200 TRUE FALSE FALSE 1087292.859 948953.3295 1024661.529 1066650.221 1042525.367 1036436.27 1002664.468 1029024.012 1139323.519 1035390.822 1.050127967 0.916517038 0.989637446 1.030190917 1.006890678 1.001009713 0.96839227 0.993850815 1.100380161 1 19.981744 -7.660949493 12.65889033 1.050139765 0.992681951 0.230614251 0.040517863 0.648773265 76.31601369 0.026323672 0.009940116 2.18E-08 7.660949493 -0.057457814 LFPADTS(ph)PSTATK ddPTM_HeLa_A486_30min_R1 3 LFPADTSPSTATK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 LFPADT(0.04)S(0.959)PSTATK;LFPADT(0.009)S(0.99)PS(0.001)TATK;LFPADT(0.007)S(0.993)PSTATK ;; 246.73 2.89E-35 1091950000 3239570 3409600 2081020 1288860 3559100 3460100 4225100 4097400 2590180 3989400 TRUE FALSE FALSE 3012492.872 3139410.878 2886846.676 3000531.215 3112684.491 3033228.042 3167935.291 3164511.466 2814698.888 2990428.273 1.007378408 1.049819822 0.965362287 1.003378426 1.040882511 1.014312254 1.059358393 1.058213465 0.941236047 1 21.51192068 LFPDT(ph)PLALDANK ddPTM_HeLa_A485_30min_R1 6 LFPDTPLALDANK 13 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 LFPDT(1)PLALDANK;LFPDT(1)PLALDANK;LFPDT(1)PLALDANK;LFPDT(1)PLALDANK;LFPDT(1)PLALDANK;LFPDT(1)PLALDANK ;;;;; 248.61 2.87E-41 2031258000 2222150 2083290 1688450 2885920 2886530 2328000 3317720 3332850 2056500 3719420 TRUE FALSE FALSE 2716459.601 2326912.643 2313077.917 3043570.502 2599136.938 2449890.48 2608862.019 2515463.312 2469220.687 2792237.045 0.972861386 0.833350681 0.828395971 1.090011504 0.930843942 0.877393445 0.934326841 0.900877422 0.884316284 1 21.41298999 LFPDT(ph)PLALDANK ddPTM_HeLa_A486_30min_R1 3 LFPDTPLALDANK 13 0 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 LFPDT(1)PLALDANK;LFPDT(1)PLALDANK;LFPDT(1)PLALDANK ;; 177.88 1.46E-12 863313000 1366718 1489850 785762 612487 1412738 1457738 1806764 1705252 1091275 1631396 TRUE FALSE FALSE 1270918.126 1371788.86 1090030.09 1425900.689 1235539.227 1277897.107 1354692.537 1317003.345 1185867.596 1222883.823 1.039279531 1.121765481 0.891360299 1.166014843 1.010348819 1.044986517 1.107785148 1.07696522 0.969730381 1 20.22185592 -7.76363944 24.96173475 0.984865165 1.057259291 0.144834153 0.070416685 108.4310862 1230107 0.054691085 0.016775286 1.72E-08 7.76363944 0.072394126 LFPDT(ph)PLALDANKK ddPTM_HeLa_A485_30min_R1 2 LFPDTPLALDANKK 14 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 LFPDT(1)PLALDANKK;LFPDT(1)PLALDANKK ; 203.59 5.81E-22 3823800000 3088100 2370150 1657980 4161900 3405900 3294100 4814600 4910800 2582730 5880700 TRUE FALSE FALSE 3775037.191 2647318.425 2271335.796 4389254.059 3066796.637 3466573.982 3785921.378 3706418.6 3101060.221 4414749.716 0.855096536 0.599653116 0.51448801 0.994224892 0.694670555 0.785225484 0.857561951 0.839553505 0.702431716 1 22.07390022 -14 0.094647744 1.762027067 0.580117671 0.239318742 0.131016446 284.4845424 1.849841181 43.40612702 2.661472048 1.00E-14 14 -1.181909396 LFPDT(ph)PLALDANKK ddPTM_HeLa_A486_30min_R1 3 LFPDTPLALDANKK 14 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 LFPDT(1)PLALDANKK;LFPDT(1)PLALDANKK;LFPDT(1)PLALDANKK ;; 214.54 4.43E-23 4664269000 2407199 2414595 1045537 1204207 2042030 2666813 3576830 3139414 1764970 3184320 TRUE FALSE FALSE 2238466.781 2223253.698 1450396.927 2803454.753 1785899.556 2337808.726 2681869.302 2424637.965 1917959.021 2386945.546 0.937795496 0.931422044 0.607637208 1.174494642 0.748194511 0.979414353 1.123556969 1.015791068 0.803520225 1 21.18673422 -6.491952063 24.65630689 0.996240537 0.881989709 0.101509924 0.154283627 1296.313118 1033487.872 0.053120136 0.046789358 3.22E-07 6.491952063 -0.114250828 LFPEFDDS(ph)DYDEVPEEGPGAPAR ddPTM_HeLa_A485_30min_R1 4 LFPEFDDSDYDEVPEEGPGAPAR 23 0 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 LFPEFDDS(0.875)DY(0.125)DEVPEEGPGAPAR;LFPEFDDS(0.5)DY(0.5)DEVPEEGPGAPAR;LFPEFDDS(0.5)DY(0.5)DEVPEEGPGAPAR;LFPEFDDS(0.815)DY(0.185)DEVPEEGPGAPAR ;;; 113.51 8.08E-05 225689000 94424.7 121829 113148 97340 138094 118127 137015 153704 100684 126952 TRUE FALSE FALSE 115429.1488 136075.8418 155006.1537 102657.4377 124344.8765 124311.9471 107740.6259 116007.853 120890.3553 95305.20278 1.211152648 1.427790276 1.626418592 1.077144109 1.304701872 1.304356357 1.130480003 1.217224764 1.26845494 1 16.54026735 -8.438435478 0.13710783 0.779263148 1.529740448 0.32837053 0.139169786 14.07532565 0.957635967 3.047799896 1.698357569 3.64E-09 8.438435478 0.7504773 LFPEFDDS(ph)DYDEVPEEGPGAPAR ddPTM_HeLa_A486_30min_R1 4 LFPEFDDSDYDEVPEEGPGAPAR 23 0 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 LFPEFDDS(0.91)DY(0.09)DEVPEEGPGAPAR;LFPEFDDS(0.5)DY(0.5)DEVPEEGPGAPAR;LFPEFDDS(0.874)DY(0.126)DEVPEEGPGAPAR;LFPEFDDS(0.975)DY(0.025)DEVPEEGPGAPAR ;;; 115.55 8.51E-05 330084000 97752 112206 101047 38520.3 125446 99772 113570 129248 102134 106719 TRUE FALSE FALSE 90900.08959 103314.3879 140175.1045 89677.20511 109711.3929 87463.14505 85153.58478 99821.05186 110987.0574 79995.86778 1.136309813 1.291496558 1.752279317 1.121022968 1.371463252 1.093345787 1.064474793 1.247827602 1.387409881 1 16.28763786 LFPGS(ph)PAIYK ddPTM_HeLa_A485_30min_R1 2 LFPGSPAIYK 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H0YBN8;C9J6W1;Q7Z3J3-2;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2;C9J1W9;C9JF75 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5;RGPD1;RGPD2;RGPD6 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 LFPGS(1)PAIYK;LFPGS(1)PAIYK ; 136.67 3.83E-05 734310000 1165250 1145290 1064740 1321790 1798660 1347520 1617300 1852320 1226010 1759240 TRUE FALSE FALSE 1424455.842 1279221.703 1458631.634 1393996.041 1619579.095 1418074.064 1271750.643 1398035.616 1472058.961 1320693.844 1.078566277 0.968598217 1.104443425 1.055502792 1.226309263 1.073734136 0.962941297 1.058561469 1.114610299 1 20.33286464 -9.827033947 13.78065769 1 1.069996827 0.084218305 0.070555878 0 0 0.071234913 0.017277004 1.49E-10 9.827033947 0.069996827 LFPGS(ph)PAIYK ddPTM_HeLa_A486_30min_R1 3 LFPGSPAIYK 10 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H0YBN8;C9J6W1;Q7Z3J3-2;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2;C9J1W9;C9JF75 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD5;RGPD1;RGPD2;RGPD6 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 LFPGS(1)PAIYK;LFPGS(1)PAIYK;LFPGS(1)PAIYK ;; 201.09 9.00E-14 741420000 1204384 1252669 769473 489000 1294512 1218394 1364972 1353740 913843 1269482 TRUE FALSE FALSE 1119962.901 1153402.946 1067433.553 1138416.713 1132142.234 1068080.936 1023441.568 1045522.954 993055.647 951595.4443 1.17693176 1.212072791 1.121730415 1.196324257 1.189730616 1.122410729 1.075500702 1.098705296 1.043569148 1 19.85998884 -7.165315563 0.609663816 1.003907632 1.187334964 0.829351465 0.027697108 0.30804611 0.234121224 0.026995046 0.015664123 6.83E-08 7.165315563 0.183427333 LFPLIQAMHPTLAGK ddPTM_HeLa_A485_30min_R1 2 LFPLIQAMHPTLAGK 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;Q9H361;H0YAS6;H0YB75 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ; ; 224.16 6.11E-23 48313000 71187 94658 90584 53489 120754 86990 117770 117940 82753 91637 FALSE FALSE TRUE 87022.30256 105727.4297 124094.7911 56410.96863 108731.3078 91544.66189 92607.47741 89015.03008 99360.76804 68793.58235 1.264977046 1.536879256 1.803871624 0.820003359 1.580544348 1.330715145 1.346164486 1.29394381 1.444331937 1 16.06998636 -12.67436219 0.228563436 1.83E-09 1.430884418 0.178548985 0.242606147 143.0098251 2.473028367 67.58425284 0.43223455 2.12E-13 12.67436219 1.430884416 LFPLIQAMHPTLAGK ddPTM_HeLa_A486_30min_R1 3 LFPLIQAMHPTLAGK 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;Q9H361;H0YAS6;H0YB75 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ;; ;; 204.28 2.40E-16 71538000 110200 112786.3 86986 16416.2 200756 96470.9 110634.7 107579.3 94604.1 79982 FALSE FALSE TRUE 102475.5491 103848.7028 120669.3088 38217.74323 175575.3105 84569.3012 82952.72789 83085.84183 102804.4596 59953.9866 1.709236614 1.732140075 2.012698664 0.637451242 2.928501013 1.410570105 1.383606539 1.385826807 1.714722663 1 15.87156807 -9.07238415 0.328650048 0.83137768 1.763827516 0.125917188 0.544519447 11.96483808 1.786330082 3.20134651 0.544099664 8.46E-10 9.07238415 0.932449836 LFPLIQTMHSNLAGK ddPTM_HeLa_A485_30min_R1 2 LFPLIQTMHSNLAGK 15 0 H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y6X6 H0Y5F5 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 0 ; ; 228.25 2.04E-23 34583000 29065 33796 32482 29086 42752 40196 45961 51836 30821 45540 FALSE FALSE TRUE 35530.40898 37748.14821 44498.44349 30674.89453 38495.46077 42300.60041 36141.05688 39123.13972 37006.49199 34187.7161 1.039274132 1.104143608 1.301591582 0.897249013 1.126002704 1.237304074 1.057135749 1.144362484 1.082449962 1 15.06119043 -8.051436738 7.903582685 1.000000759 1.11476964 0.098368409 0.10361895 2.070870687 316.7671686 0.097681051 0.025265553 8.88E-09 8.051436738 0.11476888 LFPLIQTMHSNLAGK ddPTM_HeLa_A486_30min_R1 2 LFPLIQTMHSNLAGK 15 0 H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;H0Y6X6 H0Y5F5 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 0 0 ; ; 236.3 6.39E-31 36239000 68517 70669 55351 29342 84769 70914 83845 80378 63790 82276 FALSE FALSE TRUE 63714.31212 65068.93107 76784.38955 68309.65886 74136.48158 62165.35168 62866.09418 62077.68404 69319.36856 61673.55407 1.033089678 1.055054019 1.24501321 1.107600492 1.202078957 1.007974206 1.019336329 1.006552727 1.123972335 1 15.91236437 -6.280540904 24.83353862 1.031212235 1.129787604 0.344216349 0.066931776 916.9218553 1192069.963 0.024130934 0.021312473 5.24E-07 6.280540904 0.098575369 LFPS(ph)PGLPTR ddPTM_HeLa_A486_30min_R1 1 LFPSPGLPTR 10 0 M0QYT1;M0R2C2;A0A384DVU0;Q8IY17-5;Q8IY17-2;Q8IY17-3;Q8IY17 M0QYT1 PNPLA6 Neuropathy target esterase 1 0 LFPS(1)PGLPTR 73.951 0.011495 11557000 24076 25771 19770 9320.4 28431 19197 23808 24134 19625 24937 TRUE FALSE FALSE 22388.39673 23728.8121 27425.47346 21698.36223 24864.91887 16828.66932 17850.98658 18639.21504 21326.1108 18692.61289 1.197713603 1.269421897 1.467182444 1.16079878 1.330200279 0.900284483 0.95497546 0.997143372 1.140884419 1 14.19018063 -6.255089265 24.97634099 0.995748875 1.287408572 0.693954571 0.095083547 292.3649322 1149934.104 0.032144826 0.031390734 5.56E-07 6.255089265 0.291659697 LFPSPGLPTRTS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 LFPSPGLPTRTSPVR 15 1 M0QYT1;M0R2C2;A0A384DVU0;Q8IY17-5;Q8IY17-2;Q8IY17-3;Q8IY17 M0QYT1 PNPLA6 Neuropathy target esterase 1 0 LFPSPGLPT(0.102)RT(0.403)S(0.494)PVR 128.1 1.09E-05 288320000 194210 192570 195150 60938 291980 170260 189480 195320 183060 191370 TRUE FALSE FALSE 180596.8819 177310.0519 270717.3063 141866.7436 255357.1458 149255.0523 142070.0999 150849.8998 198927.7882 143449.7064 1.258956093 1.236043324 1.887193171 0.988965033 1.780116197 1.040469556 0.990382647 1.051587372 1.386742387 1 17.13018549 -6.321526058 24.9999452 1.090594481 1.420336243 0.286445505 0.265230708 330.6550111 137572.7457 0.089324477 0.078776801 4.77E-07 6.321526058 0.329741763 LFQCLLHR ddPTM_HeLa_A485_30min_R1 4 LFQCLLHR 8 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 ;;; ;;; 204.65 1.48E-10 655542000 410550 613060 623390 445845 680180 541853 659330 736600 504396 561470 FALSE FALSE TRUE 501875.4311 684752.0341 854007.9024 470200.3834 612458.8909 570223.5852 518458.7593 555947.6951 605623.6506 421505.8621 1.190672482 1.624537392 2.026087842 1.115525134 1.453025796 1.352824804 1.230015537 1.318956022 1.436809556 1 18.68519317 -5.293319767 24.99966463 1.29484554 1.614843441 0.316159814 0.228374138 803.369378 629977.0598 0.063852339 0.094717471 5.09E-06 5.293319767 0.319997901 LFQCLLHR ddPTM_HeLa_A486_30min_R1 4 LFQCLLHR 8 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 ;;; ;;; 187.55 3.19E-07 552782000 734979 805873 725874 255145 1203770 717494 819586 825329 690856 814234 FALSE FALSE TRUE 683460.7675 742012.6885 1006951.852 593990.4543 1052781.942 628976.8852 614516.9141 637419.6035 750739.9543 610344.5066 1.119795067 1.215727643 1.649808987 0.973205211 1.724897874 1.030527642 1.006836151 1.044360352 1.230026561 1 19.21926427 LFQECCPHSTDR ddPTM_HeLa_A485_30min_R1 2 LFQECCPHSTDR 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 167.98 6.49E-10 222560000 146981 221900 243803 144607 275825 172332 249661 247204 193868 220286 FALSE FALSE TRUE 179676.4164 247849.2747 333995.8752 152506.5142 248362.8945 181355.037 196318.8878 186576.8314 232775.5293 165372.7543 1.086493462 1.498731008 2.019654789 0.92219855 1.501836839 1.09664399 1.187129577 1.128219895 1.407580894 1 17.33536204 -5.287918404 24.99988521 1.19352751 1.531337177 0.274716794 0.265149331 993.6539508 938145.4101 0.07353874 0.109108699 5.15E-06 5.287918404 0.337809667 LFQECCPHSTDR ddPTM_HeLa_A486_30min_R1 3 LFQECCPHSTDR 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;; ;; 145.81 6.50E-07 534160000 497190 645020 599550 71547 889600 480820 580490 617790 578840 422550 FALSE FALSE TRUE 462339.5485 593906.2661 831711.8165 166565.0318 778018.0728 421501.317 435245.2622 477132.7033 629014.3173 316740.7297 1.459678233 1.875054928 2.625844227 0.525871845 2.456324684 1.330745552 1.374137335 1.506382535 1.985896534 1 18.27294287 -11.69110886 0.198033239 1.44E-14 1.819939995 0.105873722 0.573149306 113.6480634 2.557031989 52.34851477 1.494871302 2.04E-12 11.69110886 1.819939995 LFQLGPPS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 LFQLGPPSPVK 11 0 Q9NZH5-2;Q9NZH5;O95997 Q9NZH5-2 PTTG2;PTTG1 Securin-2;Securin 1 0 LFQLGPPS(1)PVK 176.87 6.86E-09 907930000 775050 569730 516720 1194300 758500 581420 926330 671500 677210 1494600 TRUE FALSE FALSE 947457.1986 636354.9675 707876.2305 1259541.585 682981.0767 611862.2522 728412.0281 506813.5721 813119.8353 1122023.726 0.84441815 0.567149297 0.63089239 1.122562345 0.608704665 0.545320244 0.649194853 0.451695949 0.724690411 1 20.09767175 -8.031073709 23.58147115 1.000000007 0.673750754 0.227252006 0.177312332 3060.04327 2322228.485 0.176627057 0.04560491 9.31E-09 8.031073709 -0.326249253 LFQLGPPS(ph)PVK ddPTM_HeLa_A486_30min_R1 3 LFQLGPPSPVK 11 0 Q9NZH5-2;Q9NZH5;O95997 Q9NZH5-2 PTTG2;PTTG1 Securin-2;Securin 1 0 LFQLGPPS(1)PVK;LFQLGPPS(1)PVK;LFQLGPPS(1)PVK ;; 215.61 1.02E-17 2452743000 1182867 1425656 880029 594912 1257683 1728275 1874939 1715845 1309913 1847665 TRUE FALSE FALSE 1099954.132 1312681.826 1220799.797 1384985.201 1099932.671 1515058.002 1405809.431 1325184.55 1423457.314 1384997.658 0.794192052 0.947786315 0.881445387 0.999991006 0.794176557 1.093906545 1.015026577 0.956813568 1.027768752 1 20.40145211 -6.267510895 24.96708823 1.015774151 0.893444259 0.505730273 0.066429366 447.1762585 1838858.88 0.022363445 0.020222143 5.40E-07 6.267510895 -0.122329892 LFRLS(ph)FK ddPTM_HeLa_A486_30min_R1 1 LFRLSFK 7 1 Q9P2F5-2;Q9P2F5 Q9P2F5-2 STOX2 Storkhead-box protein 2 1 0 LFRLS(1)FK 67.993 0.011078 38927000 83443 76580 37084 34249 53664 78299 87579 87102 58465 99809 TRUE FALSE FALSE 77594.0766 70511.5219 51443.91794 79733.40285 46932.96072 68639.26547 65665.80788 67270.77602 63532.79327 74816.17675 1.037129669 0.942463582 0.687604208 1.065724103 0.627310333 0.917438827 0.877695316 0.89914747 0.849185244 1 16.19106262 -9.905030507 13.94035667 0.999988562 0.874367061 0.073459273 0.129142618 0 0 0.11818319 0.028663634 1.24E-10 9.905030507 -0.125621501 LFRPPS(ph)PAPAAPGAR ddPTM_HeLa_A485_30min_R1 6 LFRPPSPAPAAPGAR 15 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR ;;;;; 124.25 1.40E-05 20479070000 1241210 1744120 1820240 1372960 2120690 1755740 1949030 2194490 1584110 1690830 TRUE FALSE FALSE 1517312.882 1948079.662 2493622.523 1447961.328 1909546.657 1847667.832 1532603.818 1656287.887 1902026.347 1269337.198 1.1953584 1.534721951 1.96450756 1.140722363 1.50436516 1.455616233 1.207404794 1.304844677 1.498440563 1 20.27564394 -12.599662 0.16518307 8.41E-06 1.554245183 0.244971301 0.225247595 110.3327029 1.570786875 38.1945303 0.948118078 2.51E-13 12.599662 1.554236772 LFRPPS(ph)PAPAAPGAR ddPTM_HeLa_A486_30min_R1 7 LFRPPSPAPAAPGAR 15 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR;LFRPPS(1)PAPAAPGAR ;;;;;; 130.36 9.05E-06 23125390000 2114444 2424556 2124005 789884 2689860 2087991 2278881 2389690 1898028 2290885 TRUE FALSE FALSE 1966232.395 2232425.352 2946476.619 1838889.871 2352472.677 1830395.9 1708680.87 1845609.754 2062550.595 1717232.485 1.145000698 1.300013465 1.715828605 1.070845029 1.369920903 1.065898715 0.995020118 1.074758234 1.201089901 1 20.71165394 -6.267259738 23.75378911 1.067504925 1.327306294 0.363068485 0.16740051 275.2934444 1123510.64 0.058676996 0.053201488 5.40E-07 6.267259738 0.259801369 LFS(ph)ADPFDLEAQAK ddPTM_HeLa_A486_30min_R1 2 LFSADPFDLEAQAK 14 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3;H0YII4;H0YI90 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 LFS(1)ADPFDLEAQAK;LFS(1)ADPFDLEAQAK ; 99.011 0.00076815 16315800 58620 52629 24705 35821 45547 64581 78318 67741 41725 104698 TRUE FALSE FALSE 54511.04071 48458.48637 34271.43762 83393.09829 39834.07055 56613.65283 58722.00804 52317.85308 45341.7566 78480.93933 0.694576813 0.617455484 0.436684855 1.062590471 0.507563631 0.721368186 0.748232737 0.666631331 0.577742277 1 16.26005469 -11.09806178 2.559477631 1.584069888 0.672325413 0.276687116 0.15988467 12727918.77 3554190.297 43426509.39 0.038960953 7.98E-12 11.09806178 -0.911744475 LFSLS(ph)NPSLSTTNLSGPSR ddPTM_HeLa_A485_30min_R1 2 LFSLSNPSLSTTNLSGPSR 19 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LFSLS(1)NPSLSTTNLSGPSR;LFSLS(1)NPSLSTTNLSGPSR ; 365.74 8.65E-130 3764800000 316802 403933 389109 394690 527427 296814 453960 501095 356867 425481 TRUE FALSE FALSE 387273.5119 451169.4506 533056.6113 416250.9153 474914.516 312354.7221 356967.7375 378200.6656 428486.9335 319416.4171 1.212440849 1.412480469 1.668845378 1.30316068 1.48681937 0.977891885 1.117562274 1.184036403 1.341468098 1 18.28507894 -6.24959796 24.98448982 1.135279664 1.424207052 0.501651352 0.145491995 663.809243 1400587.443 0.04900114 0.048616076 5.63E-07 6.24959796 0.288927389 LFSLS(ph)NPSLSTTNLSGPSR ddPTM_HeLa_A486_30min_R1 2 LFSLSNPSLSTTNLSGPSR 19 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LFSLS(1)NPSLSTTNLSGPSR;LFSLS(0.994)NPS(0.006)LSTTNLSGPSR ; 418.86 2.55E-165 2909800000 486720 512030 446910 138641 594230 425920 407180 471550 403230 472470 TRUE FALSE FALSE 452603.4414 471454.878 619965.5207 322763.2545 519696.1324 373374.3208 305299.2573 364188.3589 438182.3011 354160.4367 1.277961609 1.331190131 1.750521674 0.911347573 1.467403127 1.054251921 0.862036596 1.028314631 1.237242378 1 18.43404353 -5.975676542 1.206034431 1.028724609 1.395532342 0.314731476 0.216955039 0.552793564 1.688710404 0.096336505 0.112978293 1.06E-06 5.975676542 0.366807733 LFSLS(ph)NPSLSTTNLSGPSRR ddPTM_HeLa_A485_30min_R1 2 LFSLSNPSLSTTNLSGPSRR 20 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LFS(0.004)LS(0.996)NPSLSTTNLSGPSRR;LFS(0.003)LS(0.996)NPSLSTTNLSGPSRR ; 132.36 2.22E-07 1073030000 97753 163122 122738 85038 145889 145923 163641 251140 105336 96046 TRUE FALSE FALSE 119497.8176 182197.6989 168143.8938 89683.41061 131363.7789 153563.3026 128677.7635 189547.5212 126475.969 72103.4998 1.657309533 2.526891197 2.331979644 1.243814945 1.821877985 2.129762121 1.784625766 2.628825532 1.754089182 1 16.13778167 -8.018644318 24.39779918 0.999999971 2.01866021 0.374347928 0.395672595 1029.729725 1347495.714 0.38728038 0.099995364 9.58E-09 8.018644318 1.018660239 LFSLS(ph)NPSLSTTNLSGPSRR ddPTM_HeLa_A486_30min_R1 2 LFSLSNPSLSTTNLSGPSRR 20 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LFS(0.01)LS(0.99)NPSLSTTNLSGPSRR;LFS(0.001)LS(0.999)NPSLSTTNLSGPSRR ; 156.41 2.97E-10 916860000 200462 149436 165068 56797 221620 113252 174312 177475 118629 179443 TRUE FALSE FALSE 186410.649 137594.1471 228986.7503 132226.2864 193822.3531 99280.1197 130697.2939 137067.8168 128911.8572 134509.3048 1.385856906 1.022934044 1.702385947 0.983027059 1.4409587 0.738091092 0.971659872 1.019021078 0.958386168 1 17.03734645 -6.255810762 24.99861668 0.940759722 1.295213058 0.448616002 0.204650489 444.1146563 1972467.465 0.064586252 0.062874578 5.55E-07 6.255810762 0.354453336 LFSS(ph)FLK ddPTM_HeLa_A485_30min_R1 2 LFSSFLK 7 0 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8Y6T6;A0A3B3ITC5;A0A2R8YFU8 P11171 EPB41 Protein 4.1 1 0 LFS(0.001)S(0.999)FLK;LFS(0.13)S(0.87)FLK ; 156.35 0.00051851 128562000 633270 434220 335790 528950 606060 357470 855760 917810 440760 688800 TRUE FALSE FALSE 774138.7267 484998.2518 460012.6944 557845.1991 545718.5384 376186.5764 672919.8851 692715.6584 529216.4891 517094.8364 1.497092356 0.937929017 0.889609917 1.078806362 1.05535484 0.72750016 1.301347137 1.339629812 1.023441837 1 18.98006937 LFSS(ph)FLK ddPTM_HeLa_A486_30min_R1 2 LFSSFLK 7 0 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8Y6T6;A0A3B3ITC5;A0A2R8YFU8 P11171 EPB41 Protein 4.1 1 0 LFSS(1)FLK;LFSS(1)FLK ; 169.44 0.00035984 149904000 605110 795860 444310 414550 603630 922130 1132260 1281920 462400 672030 TRUE FALSE FALSE 562694.9138 732793.1551 616358.731 965093.3502 527917.0968 808366.9761 848956.5722 990054.8001 502481.2043 503749.3138 1.117013757 1.45467822 1.223542572 1.915820675 1.047975813 1.604700898 1.685275888 1.965372007 0.997482658 1 18.94234644 -3.535790267 1.063199283 1.490237884 3.69E-10 0.052309375 0.346806695 18.62593672 5.647140975 0.103133158 45.46640386 0.000291212 3.535790267 -1.490237884 LFSTETSLQVHRR ddPTM_HeLa_A486_30min_R1 1 LFSTETSLQVHRR 13 1 A0A0C4DFM2;Q6ZN55;Q6ZN55-2 A0A0C4DFM2 ZNF574 Zinc finger protein 574 0 0 41.052 0.037983 33303000 18051 18291 26869 1242.5 21753 21871 9401.2 18739 42015 6070.5 FALSE FALSE TRUE 16785.71812 16841.55455 37273.39638 2892.602792 19024.5359 19172.77839 7048.920324 14472.53877 45656.89403 4550.407288 3.688838615 3.701109259 8.19122202 0.635679975 4.180842439 4.213420289 1.549074595 3.180493054 10.03358406 1 12.15177997 -5.265759304 24.99860003 3.604296573 5.044461768 0.069393042 2.749221377 1236.380662 7154716.889 0.761147725 1.174965966 5.42E-06 5.265759304 1.440165196 LFSWLVNR ddPTM_HeLa_A485_30min_R1 2 LFSWLVNR 8 0 E9PDF6;O43795-2;O43795;A0A0U1RRI3 E9PDF6 MYO1B Unconventional myosin-Ib 0 0 ; ; 150.84 0.00049967 22827000 20017.8 27152 27444 19712.6 25983 19953.4 26374 27847 18608.2 29545 FALSE FALSE TRUE 24470.69055 30327.19021 37596.67764 20789.44942 23396.04129 20998.12917 20738.97944 21017.47959 22342.69506 22179.97524 1.103278533 1.367322997 1.695073022 0.937307152 1.054827205 0.946715627 0.935031677 0.947588055 1.007336339 1 14.43697013 -5.288959128 24.99801267 0.973774157 1.386434695 0.655274647 0.137270847 422.1556034 383470.998 0.039111692 0.058026293 5.14E-06 5.288959128 0.412660538 LFSWLVNR ddPTM_HeLa_A486_30min_R1 1 LFSWLVNR 8 0 E9PDF6;O43795-2;O43795;A0A0U1RRI3 E9PDF6 MYO1B Unconventional myosin-Ib 0 0 137.18 0.0011056 19819000 8846.9 9265.1 9644.3 3707.3 11664 7049.8 8934.4 10093 8984.4 8596.9 FALSE FALSE TRUE 8226.777995 8530.899733 13378.83124 8630.781757 10200.99236 6180.067353 6698.918622 7795.044229 9763.175026 6444.180284 1.276621329 1.323814567 2.076110639 1.339314137 1.582977494 0.959015279 1.039529983 1.209625412 1.515037537 1 12.65378114 -6.247689806 24.31834354 1.151173749 1.52976413 0.349953329 0.255372297 664.772207 1175757.197 0.086791268 0.086322453 5.65E-07 6.247689806 0.378590381 LFTHTIVPGQVLFVPDANS(ph)PSSTLR ddPTM_HeLa_A485_30min_R1 1 LFTHTIVPGQVLFVPDANSPSSTLR 25 0 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3;Q5TF96 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 LFTHTIVPGQVLFVPDANS(0.671)PS(0.196)S(0.059)T(0.074)LR 76.97 0.0055824 327820000 243040 257420 308110 284780 343190 184550 299260 212500 253450 369700 TRUE FALSE FALSE 297103.4095 287523.0297 422092.7105 300336.8103 309020.7986 194212.7526 235320.6563 160384.0418 304315.0902 277540.5938 1.070486322 1.035967481 1.520832339 1.082136513 1.113425587 0.699763411 0.847878334 0.577875977 1.09647056 1 18.08233927 -6.125327296 4.446070021 0.819201603 1.182518004 0.426332718 0.185173127 0.209653408 6.640723455 0.061437863 0.061841244 7.49E-07 6.125327296 0.363316402 LFTHTIVPGQVLFVPDANS(ph)PSSTLR ddPTM_HeLa_A486_30min_R1 2 LFTHTIVPGQVLFVPDANSPSSTLR 25 0 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3;Q5TF96 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 LFTHTIVPGQVLFVPDANS(0.881)PS(0.041)S(0.039)T(0.039)LR;LFTHTIVPGQVLFVPDANS(0.546)PS(0.317)S(0.084)T(0.053)LR ; 146.76 3.15E-09 794600000 512040 702950 630230 226356 790100 633320 697390 719300 611890 621660 TRUE FALSE FALSE 476148.6402 647245.6819 874271.9341 526968.2074 690998.2906 555187.4175 522895.6458 555531.0922 664929.1179 465992.2897 1.021795104 1.388962213 1.876151073 1.130851774 1.482853485 1.191409021 1.122112227 1.192146532 1.426910128 1 18.82994656 -6.278896029 22.73427174 1.19449946 1.394322546 0.144867932 0.233520558 520.6658333 678073.0111 0.082762241 0.073221516 5.26E-07 6.278896029 0.199823086 LFTLTALR ddPTM_HeLa_A486_30min_R1 1 LFTLTALR 8 0 A0A1B0GVU9;P47897;A0A1B0GTT3;A0A0U1RQQ5;H7C0R3;B4DDN1;P47897-2 A0A1B0GVU9 QARS Glutamine--tRNA ligase 0 0 108.46 0.013324 15969000 11953 11946 11399 14915 17759 16643 17097 19640 9348.2 21301 FALSE FALSE TRUE 11115.15643 10999.35545 15812.99808 34722.87376 15531.50062 14589.75587 12819.14977 15168.40074 10158.5095 15967.09095 0.696129086 0.688876608 0.990349346 2.174652469 0.972719493 0.913739135 0.802848171 0.949978978 0.636215422 1 13.96281387 -5.991082386 24.99976444 0.863757118 1.154788592 0.096861323 0.397314079 524.843528 1471342.607 0.134065956 0.151805386 1.02E-06 5.991082386 0.291031475 LFVGGIKEDTEEHHLR ddPTM_HeLa_A485_30min_R1 5 LFVGGIKEDTEEHHLR 16 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;; ;;;; 198.74 3.87E-25 1677403000 693485 879914 790664 783350 1475412 1177837 1587498 1968093 878506 1313618 FALSE FALSE TRUE 847748.3458 982812.2881 1083163.516 826142.427 1328514.801 1239506.724 1248316.084 1485415.106 1054814.096 986157.2079 0.859648278 0.996608127 1.098367996 0.837739075 1.347163302 1.25690581 1.265838827 1.506266033 1.069620632 1 19.91145813 -5.766667691 24.99996839 1.268319745 0.962290459 0.476678006 0.148388474 104.0370521 497468.7391 0.043522232 0.050820315 1.71E-06 5.766667691 -0.306029286 LFVGGIKEDTEEHHLR ddPTM_HeLa_A486_30min_R1 5 LFVGGIKEDTEEHHLR 16 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;; ;;;; 165.33 5.26E-12 1507921700 737112.6 668547.5 636155 433240.8 1239832 882991.6 1107823 1208078 574516.6 904465.5 FALSE FALSE TRUE 685444.8132 615569.3613 882491.2528 1008606.477 1084320.71 774057.074 830633.968 933025.0116 624316.1615 677981.4517 1.011008209 0.907944251 1.301645127 1.487660871 1.599336836 1.141708334 1.225157364 1.376180734 0.920845489 1 19.37088628 -7.770446749 24.99575644 0.960422547 1.260512601 0.265836505 0.196601968 320.2738399 888737.8647 0.200037913 0.054665284 1.70E-08 7.770446749 0.300090054 LFVGGLK ddPTM_HeLa_A485_30min_R1 4 LFVGGLK 7 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 ;;; ;;; 140.79 0.0037736 165199000 488790 502030 456546 566910 555410 495770 604070 500050 483600 777700 FALSE FALSE TRUE 597519.6492 560738.0414 625441.3639 597878.8578 500111.4302 521727.7506 475005.5097 377411.9535 580654.0842 583833.7025 1.023441515 0.960441371 1.071266289 1.024056774 0.85659911 0.893623901 0.813597275 0.646437422 0.994553897 1 19.15519797 -5.771892608 7.254810595 0.847986857 1.019548275 0.360629398 0.097332427 0.139341584 38.67836313 0.029423903 0.034956599 1.69E-06 5.771892608 0.171561418 LFVGGLK ddPTM_HeLa_A486_30min_R1 4 LFVGGLK 7 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 ;;; ;;; 143.22 0.0035888 155753000 399589 443484 280388 138964 384202 448230 415576 419129 384898 494560 FALSE FALSE TRUE 371579.8746 408340.7127 388961.7427 323515.2149 336011.8026 392931.9399 311594.4893 323702.4762 418261.2685 370718.957 1.002322292 1.101483226 1.049209206 0.872669737 0.906378798 1.059918659 0.840514043 0.873174868 1.128243541 1 18.49996636 -5.150616157 8.085866539 0.946886198 1.057370257 0.198143526 0.087966468 0.425397437 28.07244128 0.023608668 0.041079854 7.07E-06 5.150616157 0.110484059 LFVGNLPADITEDEFKR ddPTM_HeLa_A486_30min_R1 1 LFVGNLPADITEDEFKR 17 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 93.152 0.001864 40120000 27613 29619 22307 40517 43038 32099 41345 42731 29821 64920 FALSE FALSE TRUE 25677.47129 27271.88257 30944.8678 94325.62362 37639.77273 28138.95174 31000.0437 33002.08411 32405.90829 48663.60944 0.52765242 0.560416354 0.635893395 1.93831951 0.773468577 0.578233963 0.637027217 0.678167618 0.665916661 1 15.57055571 -5.989821372 24.99924884 0.685829481 0.93093372 0.055270528 0.389218531 637.4025257 1565483.393 0.128858138 0.14596042 1.02E-06 5.989821372 0.245104239 LFVGS(ph)IPK ddPTM_HeLa_A485_30min_R1 2 LFVGSIPK 8 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3;O60506-3;O60506;B7Z645;O60506-4;O60506-2;O60506-5 O43390-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q 1 0 LFVGS(1)IPK;LFVGS(1)IPK ; 96.342 0.0028689 127594000 362650 373930 300060 467220 436370 407900 565630 554060 302300 629790 TRUE FALSE FALSE 443320.2414 417657.8607 411064.6805 492743.0455 392923.4706 429257.0133 444778.5297 418175.9163 362968.8371 472794.9434 0.937658593 0.883380558 0.869435442 1.042191869 0.831065298 0.907913714 0.940742992 0.884476287 0.767708797 1 18.85085508 -7.515903695 24.9650027 0.864600471 0.91415613 0.024417038 0.074339449 893.9858982 3199807.385 0.044244258 0.018113324 3.05E-08 7.515903695 0.049555659 LFVGS(ph)IPK ddPTM_HeLa_A486_30min_R1 2 LFVGSIPK 8 0 O43390-4;O43390;O43390-2;B4DT28;O43390-3;O60506-3;O60506;B7Z645;O60506-4;O60506-2;O60506-5 O43390-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q 1 0 LFVGS(1)IPK;LFVGS(1)IPK ; 88.496 0.0037353 84994000 375300 342560 236320 199930 350360 397470 490790 458750 306660 564550 TRUE FALSE FALSE 348993.4081 315414.298 327829.4329 465447.1439 306414.5818 348434.1926 367989.151 354302.6394 333241.5357 423183.0054 0.824686728 0.745337818 0.774675326 1.099872013 0.724071094 0.823365277 0.869574501 0.837232675 0.787464363 1 18.69092217 -11.09021702 2.487936379 1.279497697 0.833322591 0.20646656 0.098879472 15013600.01 6147219.679 23692033.36 0.025053626 8.12E-12 11.09021702 -0.446175107 LFVLLPEQS(ph)PVSYSK ddPTM_HeLa_A485_30min_R1 2 LFVLLPEQSPVSYSK 15 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 LFVLLPEQS(0.999)PVS(0.001)YSK;LFVLLPEQS(1)PVSYSK ; 223.14 1.18E-33 705600000 1720130 1627430 1656270 2035770 2368360 1647900 2195730 2101440 1922510 2884210 TRUE FALSE FALSE 2102766.984 1817743.782 2268993.196 2146978.96 2132557.763 1734181.496 1726594.348 1586058.545 2308340.123 2165229.527 0.971151999 0.839515515 1.047922711 0.991571071 0.984910715 0.800922708 0.797418623 0.732512893 1.066094885 1 21.04608854 -6.248617604 24.4819466 0.857548677 0.965790301 0.132519594 0.104876126 980.5935531 1872349.548 0.034359508 0.034138463 5.64E-07 6.248617604 0.108241624 LFVLLPEQS(ph)PVSYSK ddPTM_HeLa_A486_30min_R1 2 LFVLLPEQSPVSYSK 15 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 LFVLLPEQS(1)PVSYSK;LFVLLPEQS(0.999)PVS(0.001)YSK ; 232.28 1.82E-34 615570000 1386200 1585880 1131430 582430 1505200 1536040 1745990 1612220 1275390 1546230 TRUE FALSE FALSE 1289034.538 1460209.093 1569549.997 1355926.474 1316403.781 1346539.002 1309124.835 1245152.701 1385941.832 1159043.944 1.112153293 1.259839285 1.354176436 1.169866321 1.135766929 1.161766997 1.1294868 1.074292918 1.195762973 1 20.14450383 -5.502723775 11.74410555 1.125541706 1.246882941 0.363843379 0.073879962 1.032217793 597.8682935 0.020734895 0.029691837 3.14E-06 5.502723775 0.121341236 LFVLLPEQS(ph)PVSYSKR ddPTM_HeLa_A485_30min_R1 2 LFVLLPEQSPVSYSKR 16 1 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 LFVLLPEQS(1)PVSYSKR;LFVLLPEQS(1)PVSYSKR ; 231.77 8.71E-35 415790000 328850 602070 413250 235923 645240 645300 749500 1162400 435050 353400 TRUE FALSE FALSE 402001.548 672476.8492 566128.3718 248810.8761 580997.64 679086.9102 589363.2021 877319.5774 522360.5445 265303.8838 1.515249389 2.534741819 2.133886484 0.937833523 2.18993266 2.559656875 2.22146466 3.306847848 1.96891405 1 18.01728627 -5.986427841 24.97127743 2.358253072 1.822595546 0.068009017 0.666097797 495.4922055 911645.8054 0.201888624 0.228807179 1.03E-06 5.986427841 -0.535657526 LFVLLPEQS(ph)PVSYSKR ddPTM_HeLa_A486_30min_R1 2 LFVLLPEQSPVSYSKR 16 1 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 LFVLLPEQS(1)PVSYSKR;LFVLLPEQS(1)PVSYSKR ; 202.97 1.90E-25 255280000 484240 406110 365150 206333 640980 359230 522980 574970 307930 563250 TRUE FALSE FALSE 450297.2766 373928.3646 506545.8591 480353.6515 560582.3115 314911.855 392124.8725 444061.8825 334621.6203 422208.5339 1.066528127 0.885648523 1.199752772 1.137716585 1.327737993 0.745868048 0.928746913 1.051759609 0.792550585 1 18.68759621 -6.269966112 24.99787932 0.908580135 1.115292774 0.404346317 0.133073868 740.6113212 2171248.392 0.048105902 0.043079996 5.37E-07 6.269966112 0.20671264 LFVT(ph)PPEGSSR ddPTM_HeLa_A485_30min_R1 3 LFVTPPEGSSR 11 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LFVT(0.999)PPEGS(0.001)S(0.001)R;LFVT(1)PPEGSSR;LFVT(0.997)PPEGS(0.002)S(0.002)R ;; 96.067 0.0018791 114900000 720670 870410 876520 899400 1195650 948140 1127860 1289910 910460 1226910 TRUE FALSE FALSE 880980.5552 972196.8779 1200781.223 948531.9446 1076606.888 997783.1443 886883.4972 973557.55 1093180.971 921063.9166 0.956481455 1.055515106 1.303689355 1.029822065 1.168873157 1.083294141 0.962890285 1.056992389 1.186867655 1 19.81294175 -6.5263322 24.98435026 1.05167342 1.109216867 0.051953224 0.10136681 332.501328 2405461.279 0.039163952 0.030483895 2.98E-07 6.5263322 0.057543447 LFVT(ph)PPEGSSR ddPTM_HeLa_A486_30min_R1 4 LFVTPPEGSSR 11 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LFVT(1)PPEGSSR;LFVT(0.995)PPEGS(0.004)S(0.001)R;LFVT(0.993)PPEGS(0.007)SR;LFVT(0.972)PPEGS(0.012)S(0.016)R ;;; 117.03 0.0014293 246310000 1670970 1885410 1640800 627532 2321550 1709090 1939180 1954160 1620680 1836570 TRUE FALSE FALSE 1553843.632 1736003.245 2276161.702 1460926.21 2030359.551 1498239.853 1453976.653 1509240.427 1761161.847 1376680.918 1.128688291 1.261006252 1.653369109 1.061194494 1.474822179 1.088298554 1.056146442 1.096289204 1.279281077 1 20.39276278 -6.289474779 24.53153423 1.107030053 1.317378391 0.281402548 0.169195601 791.2155752 692326.5691 0.058333278 0.051456299 5.13E-07 6.289474779 0.210348338 LFVWEILHSTIR ddPTM_HeLa_A485_30min_R1 2 LFVWEILHSTIR 12 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 0 ; ; 193.73 2.88E-14 25425000 22737.3 23689 35843 22110.7 43440 18849.5 27478 22168.6 27912 40710 FALSE FALSE TRUE 27795.13394 26459.22248 49102.81725 23318.55155 39114.96107 19836.43067 21607.10083 16731.71609 33513.68238 30561.74621 0.909474666 0.865762784 1.606675774 0.76299801 1.279866694 0.649060775 0.706998241 0.547472516 1.096589251 1 14.89943936 -6.270403236 24.63096507 0.765927066 1.083876134 0.214566473 0.268638094 768.1956856 2110848.545 0.091210263 0.081644291 5.37E-07 6.270403236 0.317949068 LFVWEILHSTIR ddPTM_HeLa_A486_30min_R1 2 LFVWEILHSTIR 12 0 Q09161 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 0 ; ; 197.3 2.31E-14 24904000 23538 32911 35190 6960.8 37934 30084 33710 30238 33547 24112 FALSE FALSE TRUE 21888.10775 30303.0125 48816.51042 16205.09418 33175.964 26372.54195 25275.40145 23353.46749 36454.88097 18074.19826 1.211014034 1.676589582 2.700894929 0.896587165 1.835542774 1.459126517 1.398424488 1.292088709 2.016957015 1 14.14164403 -5.297070149 24.9999396 1.445056916 1.844210398 0.16075175 0.465527576 1167.540759 819189.5815 0.128613889 0.190772691 5.05E-06 5.297070149 0.399153482 LFYADHPFIFLVR ddPTM_HeLa_A485_30min_R1 2 LFYADHPFIFLVR 13 0 P50454;E9PKH2;H0YEP8 P50454 SERPINH1 Serpin H1 0 0 ; ; 238.98 6.11E-30 1349390000 935810 1105130 1330170 970880 1456950 1341400 1715980 1818530 858700 1321460 FALSE FALSE TRUE 1143977.706 1234365.34 1822255.236 1023916.716 1311890.942 1411633.63 1349346.855 1372532.666 1031033.214 992044.3417 1.153151788 1.244264282 1.836868736 1.032127974 1.322411597 1.422954167 1.360167886 1.383539635 1.039301542 1 19.92004508 -7.780343145 8.431537506 1.016930786 1.349578755 0.29856712 0.199009331 0.254748359 87.64619652 0.174225612 0.049152552 1.66E-08 7.780343145 0.332647969 LFYADHPFIFLVR ddPTM_HeLa_A486_30min_R1 2 LFYADHPFIFLVR 13 0 P50454;E9PKH2;H0YEP8 P50454 SERPINH1 Serpin H1 0 0 ; ; 263.29 2.30E-40 1123410000 521820 814550 908260 269860 1061340 821590 950240 923130 892480 842140 FALSE FALSE TRUE 485243.1127 750002.0915 1259962.596 628247.718 928216.8406 720230.5791 712479.9014 712953.4508 969840.885 631262.6626 0.768686541 1.188098292 1.995940313 0.995223946 1.470413024 1.140936447 1.128658392 1.129408554 1.536350781 1 19.2678809 LFYLALPPTVYEAVTK ddPTM_HeLa_A485_30min_R1 2 LFYLALPPTVYEAVTK 16 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 213.63 5.55E-24 93839000 139981 163638 148895 158168 200303 172152 230150 242230 150787 233670 FALSE FALSE TRUE 171119.2905 182774.0406 203977.4565 166808.3173 180360.13 181165.6125 180976.5723 182822.7127 181048.5678 175420.3694 0.975481303 1.041920281 1.16279231 0.950906203 1.028159561 1.032751289 1.031673648 1.042197741 1.032084064 1 17.42045675 -5.317862478 24.9999707 1.020337555 1.058252868 0.136445543 0.049234529 642.2344039 284560.4492 0.014047935 0.020836489 4.81E-06 5.317862478 0.037915313 LFYLALPPTVYEAVTK ddPTM_HeLa_A486_30min_R1 2 LFYLALPPTVYEAVTK 16 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 209.64 2.26E-18 94210000 271230 295110 202403 106307 304840 281090 337970 321040 249972 338440 FALSE FALSE TRUE 252218.1776 271724.4088 280778.8621 247488.0685 266604.1247 246411.9737 253406.3313 247946.2003 271639.7742 253692.4211 0.994188855 1.071078149 1.106768822 0.9755438 1.05089511 0.97130207 0.998872297 0.977349655 1.070744538 1 17.9527209 -5.273818007 24.82324179 1.005522565 1.058718566 0.255283135 0.039845267 889.4801435 1783699.715 0.010973525 0.016414586 5.32E-06 5.273818007 0.053196001 LGADEDS(ph)FVILEPETNR ddPTM_HeLa_A486_30min_R1 1 LGADEDSFVILEPETNR 17 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 LGADEDS(1)FVILEPETNR 75.018 0.0057613 23174000 33462 32539 29893 19414 41956 41174 53589 53457 30465 49395 TRUE FALSE FALSE 31116.4866 29960.49113 41468.37016 45196.77313 36693.48726 36094.37051 40180.46539 41286.00806 33105.73073 37026.17049 0.840391706 0.809170669 1.119974591 1.220671015 0.991014916 0.974834017 1.085190957 1.115049369 0.894117061 1 15.17625772 -4.754207 24.99925399 1.056761291 0.824781073 0.514683667 0.087329908 128.3571758 443665.1357 0.023033363 0.058313587 1.76E-05 4.754207 -0.231980218 LGADES(ph)EEEGR ddPTM_HeLa_A485_30min_R1 2 LGADESEEEGR 11 0 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 LGADES(1)EEEGR;LGADES(1)EEEGR ; 228.02 3.29E-18 944070000 598550 656650 569230 608390 677940 587650 665720 707750 557670 777610 TRUE FALSE FALSE 731695.3825 733439.5054 779811.8646 641624.8052 610441.9132 618418.4453 523483.4836 534173.2028 669589.2537 583766.1379 1.253404977 1.256392685 1.33582922 1.09911275 1.045695996 1.059359914 0.896734925 0.915046571 1.147016263 1 19.155031 -5.507793718 2.334240273 1.000106953 1.280338001 0.737728432 0.071685753 0.15246001 1.65945576 0.023131221 0.035310891 3.11E-06 5.507793718 0.280231048 LGADES(ph)EEEGR ddPTM_HeLa_A486_30min_R1 2 LGADESEEEGR 11 0 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 LGADES(1)EEEGR;LGADES(1)EEEGR ; 211.22 3.36E-15 990070000 903970 1010660 719610 349310 917320 869830 941010 987040 803080 1054360 TRUE FALSE FALSE 840606.3711 930571.6208 998262.2638 813211.3331 802261.1719 762519.2184 705559.345 762312.5389 872691.621 790341.3933 1.06359907 1.177429942 1.263077288 1.028936786 1.01508181 0.96479727 0.892727309 0.964535763 1.104195767 1 19.59211644 -5.43776272 5.318839916 0.985263051 1.168369335 0.585242522 0.066977141 0.157217854 7.35899174 0.020010772 0.029748056 3.65E-06 5.43776272 0.183106283 LGADES(ph)EEEGRR ddPTM_HeLa_A485_30min_R1 2 LGADESEEEGRR 12 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 LGADES(1)EEEGRR;LGADES(1)EEEGRR ; 115.04 0.00016544 967590000 509440 565720 502300 618570 730430 621670 754190 847110 553570 826030 TRUE FALSE FALSE 622763.1705 631876.0329 688121.6724 652360.9128 657705.8245 654219.6799 593051.1453 639354.9443 664666.4214 620115.923 1.004268956 1.018964373 1.109666188 1.051998326 1.06061754 1.054995777 0.956355293 1.031024879 1.07184221 1 19.24217841 LGADES(ph)EEEGRR ddPTM_HeLa_A486_30min_R1 1 LGADESEEEGRR 12 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 LGADES(1)EEEGRR 145.49 1.12E-07 699500000 570480 578390 467110 213390 645200 625530 695660 680610 536710 636380 TRUE FALSE FALSE 530492.298 532556.2699 647987.5016 496782.7041 564272.9997 548358.4685 521598.5101 525649.9606 583232.4549 477026.3059 1.112081853 1.116408599 1.358389451 1.041415742 1.182897029 1.149535071 1.093437623 1.101930762 1.222642122 1 18.8637093 -13.82845974 0.282620603 3.30E-09 1.161757062 0.223003561 0.08394007 321.7036731 3.375146567 188.5455269 0.093429895 1.48E-14 13.82845974 1.161757058 LGADESEEEGRRGS(ph)LSNAGDPEIVK ddPTM_HeLa_A485_30min_R1 1 LGADESEEEGRRGSLSNAGDPEIVK 25 2 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 LGADES(0.006)EEEGRRGS(0.994)LSNAGDPEIVK 156.37 5.20E-10 724300000 177130 239890 232520 266140 596650 429530 739780 977340 328050 427800 TRUE FALSE FALSE 216531.9574 267943.0487 318538.824 280678.5543 537245.431 452019.5266 581719.9596 737645.8326 393886.6259 321157.3331 0.674223924 0.834304626 0.991846647 0.873959662 1.672841862 1.40747067 1.81132392 2.296836337 1.22646001 1 18.29292071 -5.758816192 23.35077212 1.63802159 0.853510759 0.518408241 0.338667814 22.48193572 200121.4495 0.100787385 0.124047011 1.74E-06 5.758816192 -0.784510831 LGAGEGGEASVS(ph)PEK ddPTM_HeLa_A485_30min_R1 7 LGAGEGGEASVSPEK 15 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEAS(0.002)VS(0.998)PEK ;;;;;; 305.29 6.70E-68 10907440000 5891840 4454760 3621270 10468360 5862450 4469600 7597170 5471990 4455720 13134810 TRUE FALSE FALSE 7202459.481 4975705.431 4960928.467 11040220 5278763.894 4703621.345 5973972.566 4129975.873 5349942.134 9860543.595 0.730432294 0.50460762 0.503109024 1.119636042 0.535342078 0.477014406 0.605846169 0.418838559 0.542560568 1 23.23323575 -10.08167456 4.786979114 1.00001142 0.602251593 0.280944487 0.189962647 263859167 12.41584265 46478.21894 0.047293904 8.29E-11 10.08167456 -0.397759827 LGAGEGGEASVS(ph)PEK ddPTM_HeLa_A486_30min_R1 6 LGAGEGGEASVSPEK 15 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK;LGAGEGGEASVS(1)PEK ;;;;; 332.77 2.17E-90 9777950000 4891730 5503140 2944860 3084980 4262900 6714800 7660830 6562950 4745170 8709170 TRUE FALSE FALSE 4548844.988 5067051.144 4085188.658 7181989.346 3728207.332 5886396.247 5744009.306 5068709.553 5156485.156 6528337.145 0.696784631 0.776162602 0.625762513 1.100125374 0.571080698 0.901668544 0.879857945 0.776416634 0.789861957 1 22.63828413 -14 0.085926195 1.608773444 0.624442017 0.186913534 0.139706333 407.3454093 2.44675235 47.09728313 3.70217799 1.00E-14 14 -0.984331427 LGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_A485_30min_R1 6 LGAGEGGEASVSPEKTSTTSK 21 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LGAGEGGEAS(0.003)VS(0.997)PEKTSTTSK;LGAGEGGEAS(0.004)VS(0.996)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEAS(0.001)VS(0.999)PEKTSTTSK;LGAGEGGEAS(0.006)VS(0.994)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK ;;;;; 289.57 3.76E-87 23515930000 3540700 2736350 1645269 5560530 4533010 4232510 7814650 7543260 2915920 8423670 TRUE FALSE FALSE 4328316.5 3056342.329 2253922.468 5864287.674 4081687.608 4454117.679 6144986.188 5693263.658 3501118.398 6323804.095 0.684448227 0.48330756 0.356418769 0.927335443 0.645448143 0.704341503 0.971723048 0.90029096 0.553641186 1 22.59236124 -5.264605875 24.99979283 0.805422688 0.505583121 0.447175641 0.155987504 257.7099037 2034648.782 0.043472021 0.067695113 5.44E-06 5.264605875 -0.299839567 LGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_A486_30min_R1 8 LGAGEGGEASVSPEKTSTTSK 21 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK;LGAGEGGEAS(0.001)VS(0.999)PEKTSTTSK;LGAGEGGEASVS(1)PEKTSTTSK ;;;;;;; 258.05 3.69E-59 22553440000 3113380 2595410 1206549 2182890 2932950 3403590 5152390 4864080 2124020 5363280 TRUE FALSE FALSE 2895148.14 2389740.259 1673757.085 5081878.237 2565072.062 2983689.671 3863207.526 3756635.166 2308131.764 4020279.779 0.720135985 0.594421381 0.416328509 1.264060841 0.638033222 0.742159709 0.960930019 0.934421327 0.574122173 1 21.93886447 -5.215750961 24.9996875 0.859031009 0.578707947 0.319304156 0.197554234 541.8824524 296505.2221 0.052197167 0.090407731 6.08E-06 5.215750961 -0.280323062 LGAGGGS(ph)PEK ddPTM_HeLa_A485_30min_R1 7 LGAGGGSPEK 10 0 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK ;;;;;; 163.51 5.03E-07 7225460000 7414920 5194230 4175230 12034750 6321650 5346550 8327990 5944120 5189890 14256370 TRUE FALSE FALSE 9064343.373 5801650.015 5719821.323 12692177.92 5692244.329 5626487.091 6548646.903 4486315.25 6231453.319 10702519.33 0.846935483 0.542082648 0.534436907 1.185905629 0.531860224 0.525716135 0.611879007 0.419183102 0.582241725 1 23.35144711 -10.16322051 5.011013228 1.000023206 0.637993713 0.207493812 0.209601048 5.55E-05 9.27E-06 0.207236227 0.05025895 6.87E-11 10.16322051 -0.362029493 LGAGGGS(ph)PEK ddPTM_HeLa_A486_30min_R1 6 LGAGGGSPEK 10 0 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK;LGAGGGS(1)PEK ;;;;; 187.78 8.86E-10 7322550000 10564590 11542780 5076310 5081260 7566450 12789870 14230620 11939900 8859480 17209570 TRUE FALSE FALSE 9824066.797 10628088.07 7041993.18 11829430.07 6617395.287 11211985.88 10669968.36 9221445.416 9627426.86 12900181.66 0.761544842 0.823871195 0.545883257 0.91699717 0.512969155 0.869133953 0.827117683 0.714830664 0.74630165 1 23.62088805 LGAGGGS(ph)PEKS(ph)PSAQELK ddPTM_HeLa_A486_30min_R1 3 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 2 0 LGAGGGS(1)PEKS(0.743)PS(0.257)AQELK;LGAGGGS(1)PEKS(0.909)PS(0.091)AQELK;LGAGGGS(1)PEKS(0.888)PS(0.112)AQELK ;; 152.48 2.76E-08 4041200000 4000500 3689200 1148340 3397620 2821630 5258400 7439000 6325800 2696780 9534700 TRUE FALSE FALSE 3720085.609 3396854.356 1593008.002 7909831.066 2467714.855 4609672.071 5577683.518 4885553.431 2930539.062 7147149.06 0.520499234 0.475274033 0.222887194 1.106711361 0.345272616 0.64496655 0.780406771 0.683566747 0.410029095 1 22.76893645 -14 0.131133118 2.291970812 0.423729616 0.218823461 0.237123283 228.0556384 1.877956447 78.72354289 1.738240271 1.00E-14 14 -1.868241196 LGAGGGS(ph)PEKSPSAQELK ddPTM_HeLa_A485_30min_R1 4 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGS(0.999)PEKS(0.001)PSAQELK;LGAGGGS(0.95)PEKS(0.04)PS(0.009)AQELK;LGAGGGS(0.997)PEKS(0.003)PSAQELK;LGAGGGS(0.996)PEKS(0.004)PSAQELK ;;; 287.54 8.44E-69 22835790000 6919680 4576120 2935340 11842440 7126470 7064020 12852030 11489600 5060890 15531200 TRUE FALSE FALSE 8458938.943 5111257.427 4021244.416 12489362.51 6416933.624 7433881.164 10106088.8 8671757.585 6076564.202 11659557.67 0.725493984 0.4383749 0.344888248 1.071169496 0.550358239 0.637578318 0.866764339 0.743746704 0.521165929 1 23.47500972 -13.99999999 0.094906576 2.006810276 0.41869908 0.203389066 0.201552792 326.6401478 2.128614088 67.15097204 4.087268543 1.00E-14 13.99999999 -1.588111197 LGAGGGS(ph)PEKSPSAQELK ddPTM_HeLa_A486_30min_R1 7 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGS(0.995)PEKS(0.005)PSAQELK;LGAGGGS(0.975)PEKS(0.025)PSAQELK;LGAGGGS(0.979)PEKS(0.021)PSAQELK;LGAGGGS(0.966)PEKS(0.034)PSAQELK;LGAGGGS(0.998)PEKS(0.002)PSAQELK;LGAGGGS(0.969)PEKS(0.031)PSAQELK;LGAGGGS(0.912)PEKS(0.088)PSAQELK ;;;;;; 282.37 1.13E-69 13822840000 8910750 7527220 2945219 5890060 6722280 10195930 15021560 13362190 5985800 17092300 TRUE FALSE FALSE 8286152.44 6930735.674 4085686.673 13712357.35 5879108.96 8938059.821 11263006.81 10319911.03 6504653.964 12812276.83 0.646735358 0.54094489 0.318888417 1.070251411 0.458865277 0.69761682 0.879079258 0.805470501 0.507689152 1 23.61102354 -14 0.049212554 2.302291512 0.001057842 0.208668614 0.206380158 898.5793034 3.26578941 156.659493 35.78586682 1.00E-14 14 -2.30123367 LGAGGGS(ph)PEKSPSAQELKEQGNR ddPTM_HeLa_A485_30min_R1 1 LGAGGGSPEKSPSAQELKEQGNR 23 2 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGS(0.997)PEKS(0.002)PS(0.001)AQELKEQGNR 117.83 3.65E-05 676120000 107600 257010 87793 68997 279560 539040 841110 2600600 125110 119330 TRUE FALSE FALSE 131535.2488 287065.0838 120271.2841 72766.1314 251726.0248 567263.3009 661399.9773 1962798.772 150218.4294 89583.22711 1.468302193 3.204451247 1.342564763 0.812274058 2.80996826 6.332249007 7.383078268 21.91033786 1.676858875 1 16.45094102 -6.473316766 2.163961734 9.710427034 1.830551013 0.200491864 5.449484751 0.399505879 3.72369205 2.246306496 1.793308447 3.36E-07 6.473316766 -7.879876021 LGAGGGSPEKS(ph)PSAQELK ddPTM_HeLa_A485_30min_R1 1 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGSPEKS(0.994)PS(0.006)AQELK 94.463 0.00027997 236120000 178160 117230 94855 265340 176390 184740 301450 246530 154200 424930 TRUE FALSE FALSE 217791.0774 130939.0287 129945.8117 279834.8523 158827.9923 194412.7007 237042.7449 186068.131 185146.5256 319002.7713 0.682724719 0.410463609 0.407350103 0.877217622 0.497889067 0.609438909 0.74307425 0.58328061 0.58039159 1 18.28320943 -14 0.223861647 3.072404235 0.549193451 0.435278805 0.137137857 150.102415 1.50299686 140.6343058 0.255882235 1.00E-14 14 -2.523210785 LGAHEGLS(ph)PTPFMNSNLMGK ddPTM_HeLa_A485_30min_R1 2 LGAHEGLSPTPFMNSNLMGK 20 0 Q99081;Q99081-3;B4DGI9;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 0 LGAHEGLS(0.991)PT(0.009)PFMNSNLMGK;LGAHEGLS(0.991)PT(0.009)PFMNSNLMGK ; 276.85 1.46E-72 1176170000 437770 456170 386830 511290 618010 509320 561510 593200 413140 538020 TRUE FALSE FALSE 535150.4262 509515.1133 529934.5143 539220.478 556478.7544 535987.2076 441538.8014 447716.7699 496053.4085 403901.5155 1.324952756 1.261483539 1.312038935 1.335029598 1.37775852 1.327024502 1.093184315 1.108480044 1.228154363 1 18.62364403 -6.758218883 24.99988845 1.116494663 1.322780668 0.767390097 0.058064244 41.17147862 319607.1498 0.022701741 0.016840152 1.74E-07 6.758218883 0.206286004 LGAHEGLS(ph)PTPFMNSNLMGK ddPTM_HeLa_A486_30min_R1 2 LGAHEGLSPTPFMNSNLMGK 20 0 Q99081;Q99081-3;B4DGI9;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 0 LGAHEGLS(0.997)PT(0.003)PFMNSNLMGK;LGAHEGLS(0.987)PT(0.013)PFMNSNLMGK ; 251.32 2.48E-47 952830000 811610 742520 488980 254472 789720 784000 803630 838010 591340 902370 TRUE FALSE FALSE 754720.3302 683680.011 678326.1513 592423.6763 690665.9538 687278.0511 602553.2741 647213.4166 642597.8273 676410.6786 1.115772347 1.010746921 1.002831819 0.875834305 1.021074882 1.016066234 0.890809819 0.956835007 0.950011358 1 19.36753991 -4.239135256 1.497466441 0.959301136 1.181562003 0.499152554 0.046606693 1.009970865 2.015348403 0.013359836 0.338640569 5.77E-05 4.239135256 0.222260867 LGANSLLDLVVFGR ddPTM_HeLa_A485_30min_R1 2 LGANSLLDLVVFGR 14 0 D6RFM5;P31040-2;P31040;H0Y8X1;A0A087X1I3;P31040-3 D6RFM5 SDHA "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial" 0 0 ; ; 216.06 2.53E-21 24006400 25386 32066 30339 26090.9 31024 32081 35141 40675 25233 43802 FALSE FALSE TRUE 31033.02812 35815.83976 41562.65861 27516.1798 27935.14163 33760.71155 27632.83827 30699.39247 30297.03165 32882.96752 0.943741714 1.089191228 1.26395705 0.836791259 0.849532258 1.026692969 0.840338946 0.93359556 0.921359413 1 15.00505288 -5.280041728 24.99791553 0.911462122 1.097986145 0.446260904 0.093589298 706.9439651 949992.7445 0.026362227 0.039177594 5.25E-06 5.280041728 0.186524023 LGANSLLDLVVFGR ddPTM_HeLa_A486_30min_R1 2 LGANSLLDLVVFGR 14 0 D6RFM5;P31040-2;P31040;H0Y8X1;A0A087X1I3;P31040-3 D6RFM5 SDHA "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial" 0 0 ; ; 198.57 7.55E-15 26935600 27312 36314 31733 12937.4 40483 31536 35106 34645 35153 35139 FALSE FALSE TRUE 25397.56984 33436.34639 44020.86744 30118.92102 35405.24465 27645.40895 26322.10749 26757.0898 38200.09034 26339.96568 0.964221827 1.269414956 1.671257585 1.143468499 1.344164418 1.049561313 0.999322011 1.015836168 1.450271075 1 14.68496585 -6.262135381 24.97708179 1.097508115 1.29231794 0.150280194 0.207164268 117.8735092 4230015.964 0.072007972 0.067256329 5.47E-07 6.262135381 0.194809825 LGAPENSGIST(ph)LER ddPTM_HeLa_A485_30min_R1 6 LGAPENSGISTLER 14 0 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2;M0QYB0;Q9Y4F1-3 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 LGAPENSGIS(0.031)T(0.968)LER;LGAPENSGIS(0.099)T(0.901)LER;LGAPENSGIS(0.001)T(0.999)LER;LGAPENSGIS(0.031)T(0.969)LER;LGAPENSGIS(0.033)T(0.967)LER;LGAPENSGIS(0.021)T(0.979)LER ;;;;; 276.14 3.07E-48 7235080000 5232770 5711070 4367630 4968400 5168600 5725960 6665110 6889820 4812210 8293050 TRUE FALSE FALSE 6396781.634 6378929.957 5983398.089 5239811.111 4653996.036 6025762.412 5241054.8 5200080.842 5777976.407 6225745.257 1.027472434 1.024605038 0.961073388 0.841635964 0.74754039 0.967878087 0.841835729 0.835254355 0.928077871 1 22.56981512 -5.03112482 3.406974919 0.870445268 1.023770947 0.416805803 0.069174981 0.207630987 4.969307304 0.018742054 0.038710128 9.31E-06 5.03112482 0.153325678 LGAPENSGIST(ph)LER ddPTM_HeLa_A486_30min_R1 4 LGAPENSGISTLER 14 0 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2;M0QYB0;Q9Y4F1-3 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 LGAPENSGIST(1)LER;LGAPENSGIST(1)LER;LGAPENSGIS(0.067)T(0.933)LER;LGAPENSGIS(0.213)T(0.787)LER ;;; 309.98 6.00E-68 5252400000 3017100 3795840 3817350 1107720 4974350 3747590 4093760 3807610 3876710 4042890 TRUE FALSE FALSE 2805616.87 3495043.814 5295530.152 2578828.141 4350420.639 3285250.449 3069457.949 2940700.323 4212746.344 3030524.029 0.92578605 1.15328035 1.747397513 0.850951227 1.435534118 1.084053588 1.012847256 0.970360338 1.390104914 1 21.53113585 -6.421523009 23.40910196 1.084630965 1.230504807 0.059492119 0.258994591 69.1054929 15937.75313 0.089663353 0.079075593 3.79E-07 6.421523009 0.145873843 LGAQSVYHLHIHVLGGR ddPTM_HeLa_A485_30min_R1 2 LGAQSVYHLHIHVLGGR 17 0 Q9BX68 Q9BX68 HINT2 "Histidine triad nucleotide-binding protein 2, mitochondrial" 0 0 ; ; 135.55 8.82E-07 52050800 39388 45282 39805 28195 47011 41629 53629 55812 27376 61435 FALSE FALSE TRUE 48149.72471 50577.336 54530.52592 29735.22146 42330.41977 43808.63007 42170.72604 42124.01949 32870.11209 46120.38513 1.044000925 1.09663733 1.18235192 0.644730554 0.917824508 0.949875634 0.914361967 0.913349257 0.712702463 1 15.49311694 -5.235997127 24.99770069 0.868914326 1.106560803 0.519413752 0.107045511 623.6379605 612740.4073 0.028666795 0.049629622 5.81E-06 5.235997127 0.237646476 LGAQSVYHLHIHVLGGR ddPTM_HeLa_A486_30min_R1 2 LGAQSVYHLHIHVLGGR 17 0 Q9BX68 Q9BX68 HINT2 "Histidine triad nucleotide-binding protein 2, mitochondrial" 0 0 ; ; 147.1 7.14E-09 72301000 20569.4 23373.8 24933.3 7651 34407.2 26534.2 24419.1 24609.9 23805.1 27261.3 FALSE FALSE TRUE 19127.59128 21521.57496 34588.1415 17811.91466 30091.52814 23260.68018 18309.1829 19006.763 25868.54523 20434.89304 0.936026004 1.053177764 1.692602033 0.871642177 1.472556185 1.138282453 0.895976449 0.930113163 1.265900692 1 14.31874707 -6.531099104 23.89371681 1.017167268 1.215313645 0.108741867 0.245113504 242.7103286 705460.5855 0.091581735 0.071086511 2.94E-07 6.531099104 0.198146377 LGAQT(ph)PVGVSTLEPGQTLLPR ddPTM_HeLa_A485_30min_R1 1 LGAQTPVGVSTLEPGQTLLPR 21 0 O94887-3;O94887-2;O94887;C9JWM9;C9JVQ5 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 LGAQT(0.999)PVGVSTLEPGQTLLPR 102.33 0.0013064 50981000 21693 27738 26479 19121 30041 21451 24947 34316 19843 28066 TRUE FALSE FALSE 26518.53301 30981.71781 36274.68398 20165.53181 27050.01256 22574.14119 19616.86965 25899.94719 23825.30809 21069.66272 1.258612127 1.470442039 1.721654707 0.957088497 1.283836999 1.071404962 0.93104811 1.229253052 1.130787351 1 14.3628796 -5.270628704 24.99179678 1.096908332 1.482256872 0.602566583 0.147707162 440.2122311 1197224.862 0.041582604 0.062647812 5.36E-06 5.270628704 0.38534854 LGASEAAAFDS(ph)DESEAVGATR ddPTM_HeLa_A485_30min_R1 2 LGASEAAAFDSDESEAVGATR 21 0 H3BLZ3;Q8IX03-2;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 LGASEAAAFDS(1)DESEAVGATR;LGASEAAAFDS(1)DESEAVGATR ; 233.59 4.11E-37 134690000 77849 83913 90778 74574 112027 77652 92889 96617 82406 100274 TRUE FALSE FALSE 95166.24147 93725.8954 124360.5598 78647.78879 100873.1985 81717.73865 73042.50632 72921.52926 98944.12833 75277.53721 1.264205034 1.245071224 1.652027476 1.044771013 1.340017252 1.085552765 0.970309458 0.968702377 1.314391145 1 16.19993181 -6.021525103 1.387212246 1.05741706 1.343936163 0.328313447 0.169017612 0.48367098 1.91372955 0.070695836 0.078039161 9.52E-07 6.021525103 0.286519103 LGASEAAAFDS(ph)DESEAVGATR ddPTM_HeLa_A486_30min_R1 1 LGASEAAAFDSDESEAVGATR 21 0 H3BLZ3;Q8IX03-2;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 LGASEAAAFDS(1)DESEAVGATR 243.99 1.61E-46 101870000 105550 126730 121020 45281 166770 129030 139770 147130 90924 113590 TRUE FALSE FALSE 98151.49006 116687.4533 167882.185 105416.4564 145852.1515 113111.5905 104798.0677 113631.7108 98805.36553 85146.32465 1.152739011 1.370434411 1.971690331 1.238062322 1.712958864 1.328437733 1.230799663 1.33454628 1.160418444 1 16.37765664 -7.487985674 0.731275896 1.019514664 1.492310096 0.305736973 0.22718949 0.8042634 0.874034636 0.215921962 0.095080387 3.25E-08 7.487985674 0.472795432 LGASNS(ph)PGQPNS(ph)VK ddPTM_HeLa_A485_30min_R1 1 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 2 0 LGAS(0.172)NS(0.828)PGQPNS(1)VK 70.748 0.0041139 0 144620 119720 80520 197010 187930 130230 218280 207930 133240 271230 TRUE FALSE FALSE 176790.2201 133720.2126 110307.6987 207772.1574 169219.0293 137048.6414 171642.6948 156934.8415 159980.0459 203617.3526 0.868247317 0.656723068 0.541740168 1.020404964 0.831063891 0.673069558 0.842966931 0.770734122 0.785689647 1 17.63550099 -13.99999993 0.220871186 2.149217998 0.745697451 0.224996219 0.124635378 243.3718771 2.43598196 124.4946152 0.245048532 1.00E-14 13.99999993 -1.403520547 LGASNS(ph)PGQPNS(ph)VK ddPTM_HeLa_A486_30min_R1 1 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 2 0 LGASNS(1)PGQPNS(1)VK 153.36 4.23E-07 0 493840 481950 230720 296270 478860 536840 766510 662030 339670 937100 TRUE FALSE FALSE 459224.3662 443758.5268 320060.9629 689731.5327 418796.9136 470610.139 574721.0907 511300.221 369112.8691 702444.0605 0.653752223 0.63173504 0.455639076 0.981902434 0.596199665 0.66996102 0.818173465 0.727887457 0.525469414 1 19.42202381 -11.24951891 2.377175702 2.260625647 0.678342869 0.327442374 0.140256089 10016310.11 1346333.691 68260503.14 0.034340836 5.63E-12 11.24951891 -1.582282778 LGASNS(ph)PGQPNS(ph)VKR ddPTM_HeLa_A485_30min_R1 1 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 2 0 LGAS(0.468)NS(0.532)PGQPNS(1)VKR 55.763 0.01738 287330000 302080 254170 193230 419160 420300 334640 493480 522000 267010 561440 TRUE FALSE FALSE 369276.6538 283892.9705 264713.818 442057.6494 378453.4562 352161.2329 388043.9666 393978.6815 320596.4578 421483.3405 0.876135824 0.673556801 0.628052861 1.04881405 0.897908458 0.835528238 0.920662644 0.934743188 0.760638505 1 18.68511608 -5.252177992 24.9132675 0.907655326 0.720679329 0.447697668 0.09551674 589.5157761 1585802.71 0.025717619 0.043768417 5.60E-06 5.252177992 -0.186975997 LGASNS(ph)PGQPNS(ph)VKR ddPTM_HeLa_A486_30min_R1 3 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 2 0 LGAS(0.461)NS(0.539)PGQPNS(1)VKR;LGAS(0.456)NS(0.544)PGQPNS(1)VKR;LGAS(0.055)NS(0.945)PGQPNS(1)VKR ;; 98.76 0.00029855 1184770000 2253170 2221600 1302330 1240770 2512320 2923070 3449500 3429670 1862770 3465250 TRUE FALSE FALSE 2095234.418 2045552.325 1806627.054 2888575.265 2197201.399 2562451.343 2586398.615 2648809.01 2024236.403 2597528.845 0.806626045 0.787499368 0.69551761 1.112047426 0.845881424 0.986495818 0.99571507 1.019741904 0.779293138 1 21.30870834 -5.246143721 24.99784057 0.961056612 0.765642839 0.501736827 0.091096283 664.2225189 1085543.519 0.023657941 0.040786521 5.67E-06 5.246143721 -0.195413773 LGASNS(ph)PGQPNSVK ddPTM_HeLa_A485_30min_R1 8 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK ;;;;;;; 362.17 5.57E-96 39015870000 13449040 12325900 10139060 17496650 16269120 14027310 18704780 18272700 12349340 21634200 TRUE FALSE FALSE 16440732.55 13767306.78 13889920.22 18452447.69 14649309.29 14761758.26 14708350.95 13791291.67 14827739.26 16241192.09 1.012286072 0.847678342 0.855227876 1.136151065 0.901984855 0.908908544 0.905620158 0.849155136 0.912971116 1 23.95315419 LGASNS(ph)PGQPNSVK ddPTM_HeLa_A486_30min_R1 7 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK;LGASNS(1)PGQPNSVK ;;;;;; 334.14 2.49E-81 42501400000 24999500 27561500 16036100 9322150 25471600 27139300 31278100 30364600 21989200 29804800 TRUE FALSE FALSE 23247164.15 25377426.36 22245707.38 21702436.32 22276714.41 23791129.1 23451988.55 23451243.43 23895241.56 22341484.08 1.040538044 1.13588812 0.995713056 0.97139636 0.997100924 1.064885798 1.04970594 1.049672589 1.069545849 1 24.41322169 -9.640353611 14.09669075 0.999999981 1.040814789 0.074208537 0.044006138 0 0 0.045915147 0.011136059 2.29E-10 9.640353611 0.040814808 LGASNS(ph)PGQPNSVKR ddPTM_HeLa_A485_30min_R1 6 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LGAS(0.015)NS(0.985)PGQPNSVKR;LGAS(0.249)NS(0.75)PGQPNSVKR;LGAS(0.095)NS(0.904)PGQPNS(0.001)VKR;LGAS(0.058)NS(0.942)PGQPNSVKR;LGAS(0.001)NS(0.999)PGQPNSVKR;LGASNS(1)PGQPNSVKR ;;;;; 207.05 4.12E-25 21062060000 11354470 12874680 10444120 10619990 15747130 16382880 20747760 25377970 11558030 14834720 TRUE FALSE FALSE 13880232.68 14380261.83 14307834.6 11200133.16 14179290.45 17240662.26 16314831.58 19153983.07 13877620.6 11136697.32 1.246350896 1.291250128 1.284746653 1.005696109 1.273204258 1.548094715 1.46496139 1.719897966 1.246116349 1 23.40881812 -6.08109907 6.329378855 1.443354015 1.209239118 0.154189486 0.194628217 0.339800655 21.65993333 0.062001586 0.062376517 8.30E-07 6.08109907 -0.234114897 LGASNS(ph)PGQPNSVKR ddPTM_HeLa_A486_30min_R1 5 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LGAS(0.012)NS(0.988)PGQPNSVKR;LGASNS(1)PGQPNSVKR;LGAS(0.027)NS(0.973)PGQPNSVKR;LGAS(0.041)NS(0.959)PGQPNSVKR;LGAS(0.004)NS(0.996)PGQPNSVKR ;;;; 175.22 3.57E-12 8769770000 4614380 4459240 2849020 1723110 4932930 4371020 5277200 5573340 3471870 5859880 TRUE FALSE FALSE 4290935.791 4105873.582 3952236.843 4011487.161 4314195.922 3831767.994 3956788.743 4304412.147 3772814.487 4392527.907 0.976871606 0.934740466 0.899763628 0.913252516 0.982166992 0.872337769 0.90079991 0.979939624 0.858916452 1 22.06662002 -10.30811416 3.913966287 1.000146454 0.924687288 0.226837982 0.041916382 55478713.07 17.26107132 73757.07934 0.00972552 4.92E-11 10.30811416 -0.075459166 LGAVFNQVAFPLQYTPR ddPTM_HeLa_A485_30min_R1 1 LGAVFNQVAFPLQYTPR 17 0 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 214 2.17E-24 26801000 8546.8 11329 13608 8908.7 16533 10842 13537 13774 11752 14707 FALSE FALSE TRUE 10448.00617 12653.828 18642.16548 9395.359723 14886.91647 11409.67036 10644.70936 10395.9049 14110.5186 11040.81556 0.946307464 1.146095407 1.688477212 0.850966097 1.348352971 1.033408292 0.964123466 0.941588494 1.278032273 1 13.43055912 -6.314641766 21.97247201 1.03482256 1.201452044 0.099231355 0.228874083 204.8596087 84604.90953 0.079743412 0.070327303 4.85E-07 6.314641766 0.166629484 LGAVFNQVAFPLQYTPR ddPTM_HeLa_A486_30min_R1 2 LGAVFNQVAFPLQYTPR 17 0 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 ; ; 217.91 1.65E-24 45778000 16162.4 19639.3 18387.5 6345.7 22308.2 18098.1 20447.5 21349.6 17603.4 20030.7 FALSE FALSE TRUE 15029.49922 18083.01034 25507.63243 14773.11029 19510.09754 15865.34043 15331.31923 16488.76214 19129.27689 15014.88234 1.000973493 1.20433913 1.698823331 0.983897839 1.299383978 1.056641009 1.021074883 1.098161262 1.274021098 1 13.87410555 LGDAS(ph)DTEAADGER ddPTM_HeLa_A485_30min_R1 1 LGDASDTEAADGER 14 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 LGDAS(0.978)DT(0.022)EAADGER 74.769 0.007854 240050000 92608 102460 110790 128950 168070 117170 147620 157930 129930 167010 TRUE FALSE FALSE 113208.3301 114441.8057 151775.8314 135994.212 151336.3607 123304.84 116079.7811 119197.4199 156005.7592 125377.4806 0.902939903 0.912777998 1.210550975 1.084678136 1.207045794 0.983468797 0.925842348 0.950708367 1.244288516 1 16.93591872 -4.645502168 11.13730971 1.070365372 0.905575959 0.278343405 0.107938395 0.479795939 44.29573704 0.028614126 0.075782122 2.26E-05 4.645502168 -0.164789414 LGDAS(ph)DTEAADGER ddPTM_HeLa_A486_30min_R1 2 LGDASDTEAADGER 14 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 LGDAS(0.993)DT(0.007)EAADGER;LGDAS(0.991)DT(0.009)EAADGER ; 308.03 1.39E-68 502760000 272190 310190 253210 116169 384950 319420 363540 363860 257390 306210 TRUE FALSE FALSE 253110.8866 285609.4147 351259.6932 270447.3029 336665.9815 280013.208 272578.4469 281017.021 279700.7724 229533.0229 1.102721009 1.244306423 1.530323126 1.178250081 1.466743117 1.219925588 1.187534776 1.224298872 1.218564409 1 17.8083422 -8.387373236 0.561434379 0.99340484 1.299537981 0.314726302 0.122718566 1.82162639 1.12206313 0.159594699 0.057567014 4.10E-09 8.387373236 0.306133141 LGDELEMIR ddPTM_HeLa_A485_30min_R1 1 LGDELEMIR 9 0 Q9UMX3 Q9UMX3 BOK Bcl-2-related ovarian killer protein 0 0 117.02 0.005638 72349000 64632 87283 75745 25900 168990 27159 110700 55050 58795 180600 FALSE FALSE TRUE 79009.16542 97489.98759 103766.2275 27314.85142 152164.7622 28581.00324 87048.04066 41548.90118 70594.6172 135579.7437 0.582750515 0.719060126 0.765351996 0.201467053 1.12232667 0.210805851 0.642043113 0.306453605 0.520687053 1 17.04878212 -10.24624944 5.358267578 1.000039862 0.564127834 0.19520895 0.265921246 0.00011923 1.68E-05 0.242429563 0.058792443 5.67E-11 10.24624944 -0.435912028 LGDELEMIR ddPTM_HeLa_A486_30min_R1 2 LGDELEMIR 9 0 Q9UMX3 Q9UMX3 BOK Bcl-2-related ovarian killer protein 0 0 ; ; 111.82 0.0085625 130949000 190525 112388 85931 9545.6 120788 90463 130171 142491 127637 115477 FALSE FALSE TRUE 177170.1814 103481.9656 119205.7845 22222.63921 105637.6427 79302.59482 97600.83899 110048.9099 138700.6779 86560.80757 2.046771355 1.195482904 1.377133461 0.256728649 1.22038652 0.916148971 1.127540763 1.271348003 1.602349629 1 16.40142634 -4.097228071 1.893655096 1.075230263 2.685040238 0.415360021 0.336029449 1.40551212 3.653744071 0.092037555 4.584631615 7.99E-05 4.097228071 1.609809976 LGDLYEEEMR ddPTM_HeLa_A485_30min_R1 3 LGDLYEEEMR 10 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;; ;; 197.66 4.88E-12 631590000 350835 413705 406900 393760 525980 433500 525730 518400 389769 516110 FALSE FALSE TRUE 428877.0354 462084.201 557429.2425 415270.1117 473611.5844 456197.3897 413403.4907 391261.5872 467992.0631 387453.2753 1.106912918 1.192619163 1.438700556 1.071794041 1.222370837 1.17742556 1.066976374 1.009829087 1.207867098 1 18.56366281 -6.672976386 3.880182384 1.071488446 1.210233698 0.272846621 0.10496347 0.313000763 8.985743075 0.042732341 0.031730156 2.12E-07 6.672976386 0.138745253 LGDLYEEEMR ddPTM_HeLa_A486_30min_R1 3 LGDLYEEEMR 10 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;; ;; 195.05 2.80E-14 268140000 443690 525550 425220 180798 742330 480860 551010 553550 446410 493900 FALSE FALSE TRUE 412589.6222 483903.504 589876.5718 420906.881 649220.0494 421536.3822 413141.47 427518.7489 485105.1782 370224.2253 1.114431726 1.307055214 1.593295445 1.136897189 1.753586084 1.138597513 1.115922303 1.154756279 1.310301015 1 18.49803977 LGDS(ph)SLSR ddPTM_HeLa_A485_30min_R1 2 LGDSSLSR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LGDS(0.5)S(0.5)LSR;LGDS(0.5)S(0.5)LSR ; 112.01 0.0011367 1444120000 1863760 1578830 1604010 2341930 2233640 1557630 2414000 2030100 1618860 2841600 TRUE FALSE FALSE 2278346.982 1763460.435 2197400.047 2469863.706 2011250.959 1639185.098 1898229.179 1532214.792 1943750.353 2133241.416 1.068021165 0.826657696 1.030075654 1.157798497 0.942814509 0.768401122 0.889833268 0.718256631 0.911172237 1 21.02461581 -6.006109695 24.89448509 0.843460838 1.01281284 0.342161046 0.105626863 292.1709539 1190482.503 0.033109042 0.036322628 9.86E-07 6.006109695 0.169352002 LGDS(ph)SLSR ddPTM_HeLa_A486_30min_R1 1 LGDSSLSR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LGDS(0.69)S(0.31)LSR 179.81 8.13E-06 807670000 1163200 1483200 1065700 479980 1341000 1367300 1566900 1537300 1188700 1350400 TRUE FALSE FALSE 1081665.687 1365665.83 1478367.58 1117417.697 1172799.276 1198616.428 1174845.047 1187290.349 1291737.473 1012251.05 1.068574526 1.349137479 1.460475225 1.103893838 1.158605146 1.184109838 1.160626158 1.172920837 1.27610386 1 19.94913571 -5.296524243 24.99957075 1.160210039 1.298370093 0.249942538 0.111654423 829.5862562 591116.3154 0.031135855 0.046183939 5.05E-06 5.296524243 0.138160054 LGDSS(ph)LSR ddPTM_HeLa_A485_30min_R1 3 LGDSSLSR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LGDS(0.006)S(0.994)LSR;LGDS(0.03)S(0.97)LSR;LGDS(0.129)S(0.871)LSR ;; 137.28 0.00046208 1566650000 2823170 2436670 2472720 3516350 3500390 2460280 3548090 3112410 2428900 4191280 TRUE FALSE FALSE 3451174.427 2721617.36 3387482.026 3708439.297 3151878.881 2589096.456 2790011.586 2349086.567 2916357.951 3146471.031 1.096839727 0.864974549 1.07659724 1.178602714 1.001718703 0.822857236 0.886711353 0.746578165 0.926866296 1 21.58530323 -6.143513529 4.900711715 0.862050965 1.047221516 0.430635399 0.096425663 0.215742658 7.792705458 0.032596766 0.032684534 7.19E-07 6.143513529 0.185170551 LGDSS(ph)LSR ddPTM_HeLa_A486_30min_R1 4 LGDSSLSR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LGDS(0.007)S(0.993)LSR;LGDS(0.202)S(0.798)LSR;LGDS(0.003)S(0.997)LSR;LGDS(0.269)S(0.731)LSR ;;; 171.33 2.19E-05 2531250000 4652160 6071200 4565310 1944040 5719830 5897970 6484380 6246270 5070020 5829170 TRUE FALSE FALSE 4326067.608 5590096.001 6333120.295 4525823.366 5002395.586 5170338.428 4861919.539 4824130.676 5509493.416 4369507.89 0.990058312 1.279342237 1.449389829 1.03577416 1.14484187 1.183277055 1.112692702 1.104044391 1.260895633 1 22.05903938 -5.339640416 24.99998404 1.127893223 1.24361712 0.160087079 0.124337447 206.8822435 66136.2749 0.034895521 0.051758425 4.57E-06 5.339640416 0.115723897 LGDVS(ph)PTQIDVSQFGSFK ddPTM_HeLa_A485_30min_R1 3 LGDVSPTQIDVSQFGSFK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(1)PTQIDVSQFGSFK;LGDVS(1)PTQIDVSQFGSFK;LGDVS(0.5)PT(0.5)QIDVSQFGSFK ;; 348.63 3.38E-115 1588462000 1487536 1109291 1024778 2144921 1492369 1073218 1460506 994398 1319624 2754700 TRUE FALSE FALSE 1818433.251 1239012.933 1403886.027 2262092.603 1343783.502 1129410.035 1148456.962 750520.3313 1584460.432 2068003.986 0.879318059 0.599134693 0.678860406 1.093853115 0.649797346 0.546135328 0.555345623 0.362920157 0.766178616 1 20.97980754 -5.980886408 24.99931119 0.600329785 0.798446534 0.121630145 0.199097304 417.9444484 546640.9153 0.060565195 0.06866506 1.04E-06 5.980886408 0.198116749 LGDVS(ph)PTQIDVSQFGSFK ddPTM_HeLa_A486_30min_R1 2 LGDVSPTQIDVSQFGSFK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(1)PTQIDVSQFGSFK;LGDVS(0.828)PT(0.172)QIDVSQFGSFK ; 350.9 2.86E-115 2546100000 1221700 1442460 895290 546660 1180130 1546340 1514780 1389980 1351160 1466730 TRUE FALSE FALSE 1136065.139 1328154.216 1241970.265 1272652.107 1032107.091 1355568.293 1135766.022 1073511.897 1468279.637 1099451.261 1.033301956 1.208015547 1.129627396 1.1575339 0.938747471 1.232949873 1.033029896 0.97640699 1.335465872 1 20.06835222 LGDVS(ph)PTQIDVSQFGSFKEDTK ddPTM_HeLa_A485_30min_R1 1 LGDVSPTQIDVSQFGSFKEDTK 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(0.828)PT(0.172)QIDVSQFGSFKEDTK 198.06 4.93E-27 766610000 243150 203070 129700 349550 309690 312710 520210 527590 247960 587820 TRUE FALSE FALSE 297237.8786 226817.27 177681.4273 368645.0314 278856.1762 329083.0121 409062.8838 398197.7253 297723.2976 441287.292 0.673569994 0.513990034 0.402643426 0.83538556 0.631915265 0.745734169 0.926976351 0.902354843 0.674670001 1 18.75135868 -5.952328061 0.920196854 0.869460111 0.54173859 0.498669155 0.12714196 0.488735829 0.903681982 0.067772506 0.086965782 1.12E-06 5.952328061 -0.327721521 LGDVS(ph)PTQIDVSQFGSFKEDTK ddPTM_HeLa_A486_30min_R1 2 LGDVSPTQIDVSQFGSFKEDTK 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(0.893)PT(0.107)QIDVSQFGSFKEDTK;LGDVS(0.931)PT(0.059)QIDVS(0.005)QFGS(0.005)FKEDT(0.001)K ; 251.16 5.40E-48 637802000 726096 612075 270459 474849 647519 778409 1106234 1047369 518043 1054810 TRUE FALSE FALSE 675200.42 563571.9479 375187.9679 1105472.47 566301.1291 682376.8119 829442.5526 808905.9426 562947.3843 790678.7103 0.853950424 0.712769853 0.474513811 1.398131068 0.716221547 0.863026667 1.049026035 1.023052641 0.711979945 1 19.59273205 -5.216797744 24.99999789 0.955652546 0.683647335 0.293662152 0.202456649 593.8625402 332571.2278 0.05345421 0.092584813 6.07E-06 5.216797744 -0.272005211 LGDVSPT(ph)QIDVSQFGSFKEDTK ddPTM_HeLa_A485_30min_R1 1 LGDVSPTQIDVSQFGSFKEDTK 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(0.175)PT(0.825)QIDVSQFGSFKEDTK 185.65 1.68E-19 689850000 173000 140290 96337 259320 203880 241780 379840 398540 130770 355420 TRUE FALSE FALSE 211483.2532 156695.6951 131976.0652 273485.995 183580.9913 254439.2269 298684.081 300797.4401 157014.3395 266820.335 0.792605455 0.587270438 0.494625214 1.024981829 0.688032235 0.953597584 1.119420231 1.127340763 0.588464667 1 18.0255091 -5.265303438 24.99400537 0.933079284 0.621077373 0.383915039 0.176399604 339.1077611 2193463.824 0.049976732 0.07741532 5.43E-06 5.265303438 -0.312001911 LGDVYVNDAFGTAHR ddPTM_HeLa_A485_30min_R1 4 LGDVYVNDAFGTAHR 15 0 P00558;P00558-2;P07205 P00558 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 0 ;;; ;;; 207.39 5.13E-25 1492872000 1019206 1325925 1339140 1154959 1645730 1450600 1661610 1824290 1218663 1645250 FALSE FALSE TRUE 1245924.858 1480980.395 1834543.612 1218051.486 1481875.343 1526551.173 1306593.449 1376880.017 1463237.486 1235119.454 1.00874847 1.199058432 1.48531675 0.98618112 1.199783016 1.235954278 1.057868084 1.11477478 1.184693093 1 20.23621915 -8.953223829 0.327183975 0.961906724 1.19748265 0.118113805 0.134409563 10.58142682 1.697910447 0.719086588 0.142882202 1.11E-09 8.953223829 0.235575925 LGDVYVNDAFGTAHR ddPTM_HeLa_A486_30min_R1 4 LGDVYVNDAFGTAHR 15 0 P00558;P00558-2;P07205 P00558 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 0 ;;; ;;; 161.94 2.38E-11 1341566000 849533 1094655 880224 329711.2 1353628 1008811 1112153 1128817 930402 1061589 FALSE FALSE TRUE 789985.1237 1007910.551 1221070.306 767584.3363 1183843.354 884354.1557 833880.5562 871810.011 1011049.994 795760.2046 0.992742687 1.266600849 1.534470182 0.964592514 1.487688562 1.111332472 1.04790432 1.095568748 1.270546062 1 19.60197423 -6.462424572 24.99978524 1.106916826 1.255148502 0.136571206 0.180920762 494.4720885 204480.1026 0.061844713 0.054541812 3.45E-07 6.462424572 0.148231676 LGEAS(ph)DSELADADK ddPTM_HeLa_A485_30min_R1 2 LGEASDSELADADK 14 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LGEAS(0.879)DS(0.121)ELADADK;LGEAS(0.998)DS(0.002)ELADADK ; 228.9 3.98E-28 1201350000 1121760 678730 527110 2275700 954810 850160 1446530 991150 781330 2689000 TRUE FALSE FALSE 1371291.642 758101.5693 722109.9239 2400015.729 859745.7639 894673.063 1137467.048 748068.9084 938135.7642 2018681.787 0.679300547 0.375542879 0.357713597 1.188902453 0.425894645 0.443196678 0.563470209 0.370572971 0.464726917 1 20.94498208 -10.31295679 3.121954604 1.003295134 0.539213414 0.253535652 0.236238665 37438952.94 50045399.26 1149464.548 0.062569536 4.86E-11 10.31295679 -0.46408172 LGEAS(ph)DSELADADK ddPTM_HeLa_A486_30min_R1 2 LGEASDSELADADK 14 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LGEAS(0.992)DS(0.008)ELADADK;LGEAS(0.97)DS(0.03)ELADADK ; 97.45 0.00087838 1075210000 668680 760820 361820 457280 654400 965270 1180520 1048700 632490 1398230 TRUE FALSE FALSE 621808.9851 700529.8523 501926.3939 1064570.95 572319.05 846184.8015 885141.4097 809933.903 687314.7425 1048104.107 0.593270249 0.66837812 0.478889826 1.015711075 0.54605172 0.807348045 0.844516689 0.772760929 0.655769535 1 19.99935059 -14 0.04156808 2.251130307 3.78E-14 0.308207864 0.143981925 979.0282532 3.028724672 151.0966788 43.28713434 1.00E-14 14 -2.251130307 LGEASDS(ph)ELADADKASVASEVSTTSSTSKPPTGR ddPTM_HeLa_A486_30min_R1 1 LGEASDSELADADKASVASEVSTTSSTSKPPTGR 34 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LGEAS(0.04)DS(0.96)ELADADKASVASEVSTTSSTSKPPTGR 141.76 1.20E-09 745420000 233700 251800 89323 189030 253080 287770 439980 470030 155620 441720 TRUE FALSE FALSE 217318.8368 231846.451 123911.2578 440071.393 221336.3465 252267.8632 329892.3504 363014.4297 169109.2669 331110.4369 0.656333394 0.700208828 0.374229393 1.329077383 0.668466837 0.76188436 0.996321208 1.096354537 0.510733725 1 18.33695296 -5.232227568 24.99930276 0.900481017 0.589252416 0.303509349 0.230030329 933.0485687 798496.5964 0.06050265 0.104772596 5.86E-06 5.232227568 -0.3112286 LGEES(ph)PSLHKR ddPTM_HeLa_A485_30min_R1 1 LGEESPSLHKR 11 1 E7EUN9;Q9NX74 E7EUN9 DUS2 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 1 0 LGEES(0.901)PS(0.099)LHKR 74.133 0.0064212 160830000 161260 176490 144470 173590 249940 204560 268550 279220 165030 237840 TRUE FALSE FALSE 197131.7307 197128.9702 197915.4649 183072.7821 225055.096 215270.4453 211172.0986 210740.8572 198150.0073 178550.8651 1.104064831 1.104049371 1.108454248 1.025325652 1.260453686 1.205653331 1.182699947 1.180284716 1.109767836 1 17.4459756 -5.748845749 24.99998943 1.169260841 1.088441872 0.190810269 0.068558871 328.4065203 651926.6721 0.019601938 0.025124108 1.78E-06 5.748845749 -0.080818969 LGEGT(ph)YAT(ph)VYK ddPTM_HeLa_A486_30min_R1 1 LGEGTYATVYK 11 0 Q00537-2;Q00537;F5H6Z0;E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 Q00537-2;E5RJM2 CDK17;CDK16 Cyclin-dependent kinase 17;Cyclin-dependent kinase 16 2 0 LGEGT(0.999)Y(0.004)AT(0.993)VY(0.004)K 62.694 0.035657 1595500000 76018 132930 238180 7469.1 168140 51477 40277 59898 123660 18022 TRUE FALSE FALSE 70689.53076 122396.1427 330409.6747 17388.44227 147050.3134 45126.29112 30199.26859 46260.53296 134378.9484 13509.1739 5.232705664 9.060224083 24.45817022 1.287158075 10.88521878 3.340418257 2.235463754 3.424379116 9.947236552 1 13.72165183 LGFAGLVQEISFGTTK ddPTM_HeLa_A485_30min_R1 1 LGFAGLVQEISFGTTK 16 0 B7ZAR1;E9PCA1;P48643;E7ENZ3;P48643-2 B7ZAR1 CCT5 T-complex protein 1 subunit epsilon 0 0 169.23 3.78E-10 9047800 4864.4 4390.4 4238.4 5446.1 5979.9 5567.4 7032.5 6911.6 4629.4 7780.6 FALSE FALSE TRUE 5946.468998 4903.819089 5806.360535 5743.606653 5384.520159 5858.900455 5529.948925 5216.519263 5558.478117 5841.039611 1.018049764 0.839545597 0.994062859 0.983319244 0.921842774 1.003057819 0.946740528 0.893080618 0.951624794 1 12.51200945 -4.184747802 0.002574816 1.890175542 1.97E-05 0.011104807 0.053533596 763194.6947 299.3035286 107759.7174 111986.0982 6.54E-05 4.184747802 -1.890155823 LGFAGLVQEISFGTTK ddPTM_HeLa_A486_30min_R1 1 LGFAGLVQEISFGTTK 16 0 B7ZAR1;E9PCA1;P48643;E7ENZ3;P48643-2 B7ZAR1 CCT5 T-complex protein 1 subunit epsilon 0 0 79.82 0.02445 10461000 1576.1 3132.3 4848.1 1069.8 6489.2 3078.1 3349.2 2452.8 2963.4 2936.7 FALSE FALSE TRUE 1465.623529 2884.08514 6725.414157 2490.548465 5675.264027 2698.355318 2511.194736 1894.350984 3220.269898 2201.331205 0.665789648 1.310155025 3.055157779 1.131382892 2.578105472 1.225783431 1.140761885 0.860547917 1.462873869 1 11.10416051 -6.494483388 24.61104175 1.115688655 1.77611792 0.177312631 0.659121191 1012.717589 877751.8904 0.232290825 0.204407956 3.20E-07 6.494483388 0.660429265 LGFHLPLEVAYQR ddPTM_HeLa_A485_30min_R1 2 LGFHLPLEVAYQR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 150.68 1.49E-05 121191000 121657 168418 171420 124911 199430 163546 200631 217517 139912 177720 FALSE FALSE TRUE 148719.1799 188113.0201 234835.3914 131734.5716 179574.049 172109.0157 157764.5478 164170.6147 167991.0551 133417.6747 1.114688742 1.409955769 1.760152033 0.987384707 1.34595397 1.290001614 1.182486115 1.230501244 1.259136433 1 17.02559028 -8.9232268 0.220207419 0.869553513 1.400073599 0.189519337 0.191145529 13.03242752 1.172746242 1.890615728 0.536212633 1.19E-09 8.9232268 0.530520086 LGFHLPLEVAYQR ddPTM_HeLa_A486_30min_R1 2 LGFHLPLEVAYQR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 145.31 2.81E-05 129360000 156776 175824 153853 53388 201368 165145 178246 181815 153159 177960 FALSE FALSE TRUE 145786.812 161891.0659 213429.0019 124289.9621 176110.5478 144771.089 133646.9655 140419.6935 166434.9454 133397.6577 1.092873852 1.213597515 1.599945649 0.931725221 1.320192204 1.085259603 1.001868907 1.052639873 1.247660179 1 17.02537381 -5.986523129 1.287274613 1.078186703 1.258380333 0.14328016 0.174102187 0.85214701 2.93892173 0.075116851 0.086306128 1.03E-06 5.986523129 0.18019363 LGFQVWLK ddPTM_HeLa_A485_30min_R1 1 LGFQVWLK 8 0 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 118.01 0.0063008 71800000 158160 142170 125060 163460 210500 130080 211770 173030 92398 208340 FALSE FALSE TRUE 193342.1464 158795.5448 171324.8982 172389.4059 189541.8809 136890.7877 166523.6095 130594.1212 110941.4311 156404.6722 1.236166053 1.015286452 1.095395014 1.102201126 1.211868407 0.875234644 1.064697155 0.834975831 0.709322999 1 17.25492408 -6.767362651 1.249009295 0.840675647 1.117715803 0.498401611 0.111940074 0.378600554 1.18419749 0.071089958 0.040609251 1.71E-07 6.767362651 0.277040156 LGFQVWLK ddPTM_HeLa_A486_30min_R1 2 LGFQVWLK 8 0 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 ; ; 114.02 0.0092334 151948000 318140 343700 285430 202369 375810 360270 491190 418310 305560 381280 FALSE FALSE TRUE 295840.0289 316463.9603 395956.1401 471125.2592 328672.4055 315823.5504 368289.0667 323069.9446 332046.1868 285805.0063 1.03511143 1.107272278 1.385406593 1.648414999 1.149988273 1.105031554 1.288602574 1.130385884 1.161792759 1 18.12467166 LGFSLT(ph)PSK ddPTM_HeLa_A485_30min_R1 4 LGFSLTPSK 9 0 P38432 P38432 COIL Coilin 1 0 LGFSLT(1)PSK;LGFS(0.001)LT(0.999)PSK;LGFS(0.056)LT(0.94)PS(0.004)K;LGFS(0.058)LT(0.938)PS(0.005)K ;;; 222.18 2.04E-11 4299700000 6016460 5125020 4443830 7711780 6929930 5691820 8391790 6888950 5061440 9222450 TRUE FALSE FALSE 7354800.77 5724346.507 6087787.64 8133055.014 6239961.837 5989834.894 6598815.512 5199424.211 6077224.582 6923462.942 1.062300879 0.82680395 0.879298075 1.174709113 0.901277567 0.865150134 0.953109097 0.750986068 0.877772385 1 22.72306239 -5.979487933 24.9968967 0.878420801 0.975714025 0.150875395 0.107397653 468.8166948 571317.6213 0.033764603 0.038281725 1.05E-06 5.979487933 0.097293224 LGFSLT(ph)PSK ddPTM_HeLa_A486_30min_R1 5 LGFSLTPSK 9 0 P38432 P38432 COIL Coilin 1 0 LGFS(0.002)LT(0.998)PSK;LGFSLT(1)PSK;LGFS(0.094)LT(0.858)PS(0.048)K;LGFSLT(0.998)PS(0.002)K;LGFS(0.009)LT(0.963)PS(0.027)K ;;;; 234.9 4.63E-15 5355073200 11926093 13227501 7427852 5054562 11534170 13175350 14932453 14178504 10016186 15191467 TRUE FALSE FALSE 11090135.47 12179305.65 10304115.22 11767275.78 10087446.85 11549909.27 11196195.32 10950368.15 10884397.07 11387424.78 0.973893192 1.069539942 0.904867906 1.033357059 0.88584092 1.014268765 0.983206961 0.961619362 0.955826034 1 23.44093819 -4.751536408 24.99983803 0.967687642 1.02171653 0.169399797 0.0481291 336.3802813 849167.7026 0.011258424 0.029028817 1.77E-05 4.751536408 0.054028887 LGFSLT(ph)PSKGK ddPTM_HeLa_A485_30min_R1 2 LGFSLTPSKGK 11 1 P38432 P38432 COIL Coilin 1 0 LGFS(0.026)LT(0.747)PS(0.227)KGK;LGFSLT(0.969)PS(0.03)KGK ; 129.77 5.34E-05 1146700000 918270 1280570 685820 810010 1566510 1853610 2622200 3804900 903550 1257090 TRUE FALSE FALSE 1122535.994 1430321.522 939533.3574 854258.7952 1410542.764 1950662.153 2061945.549 2871742.309 1084884.197 943720.598 1.18947917 1.515619692 0.99556305 0.905203083 1.494661415 2.066991181 2.184911035 3.043000561 1.149581984 1 19.84800027 -6.099675447 3.536396697 2.033684067 1.167167535 0.259753226 0.558877435 0.282474903 6.555678469 0.186336175 0.190006559 7.95E-07 6.099675447 -0.866516532 LGFSLT(ph)PSKGK ddPTM_HeLa_A486_30min_R1 2 LGFSLTPSKGK 11 1 P38432 P38432 COIL Coilin 1 0 LGFS(0.039)LT(0.957)PS(0.004)KGK;LGFS(0.004)LT(0.977)PS(0.019)KGK ; 95.631 0.0023791 600190000 666810 434660 261267 314660 666550 498060 849170 896270 330792 866560 TRUE FALSE FALSE 620070.0624 400215.9586 362436.5794 732544.382 582945.0837 436614.4211 636698.6844 692208.8864 359465.3169 649567.7356 0.954588765 0.616126597 0.557965797 1.12774133 0.897435405 0.672161496 0.980188284 1.065645426 0.553391582 1 19.30912045 -5.244301798 24.99595013 0.896046733 0.700217028 0.173264731 0.189705802 1443.936423 2106044.973 0.050897897 0.087879484 5.70E-06 5.244301798 -0.195829705 LGFSS(ph)SPTK ddPTM_HeLa_A485_30min_R1 1 LGFSSSPTK 9 0 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.207)S(0.395)S(0.395)PT(0.002)K 109.16 0.00098204 143100000 283820 297680 228700 418000 360750 326170 450690 448870 293960 595070 TRUE FALSE FALSE 346954.7798 332491.0865 313305.647 440834.2816 324832.4633 343247.7568 354396.3997 338783.9287 352955.0756 446730.0005 0.776654309 0.744277497 0.70133111 0.986802501 0.727133756 0.76835618 0.79331229 0.758363952 0.790085903 1 18.76904362 -8.074227003 19.38318476 1 0.782448691 0.441188845 0.073340023 2672.534831 697891.1284 0.06994718 0.018060284 8.43E-09 8.074227003 -0.21755131 LGFSS(ph)SPTKK ddPTM_HeLa_A486_30min_R1 1 LGFSSSPTKK 10 1 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.1)S(0.45)S(0.45)PTKK 58.511 0.019311 256530000 424060 383550 171910 206110 386790 482600 551480 553460 301150 646350 TRUE FALSE FALSE 394335.5838 353156.1011 238478.1559 479834.4962 338275.1915 423061.7187 413493.871 427449.2399 327253.9245 484499.753 0.813902549 0.728908733 0.492215227 0.990370982 0.698194766 0.873192847 0.853444957 0.882248623 0.675447041 1 18.8861364 -5.271183912 24.99903194 0.842740777 0.683398818 0.292106405 0.123960574 884.847076 2270022.616 0.033599967 0.050546075 5.36E-06 5.271183912 -0.159341959 LGFSSPYEGVLNKS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LGFSSPYEGVLNKSPK 16 1 M0R0P8;M0R240;M0QXP0;Q13459;Q13459-2 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 LGFSSPYEGVLNKS(1)PK;LGFSSPYEGVLNKS(1)PK ; 198.77 2.10E-25 746380000 588360 400560 260780 973210 667870 606090 1070150 967930 446200 1416640 TRUE FALSE FALSE 719238.6522 447402.0076 357253.374 1026373.998 601374.5178 637823.9352 841503.7102 730543.6498 535748.2472 1063497.719 0.676295434 0.420689203 0.335923028 0.965092806 0.565468554 0.599741705 0.791260475 0.68692545 0.503760598 1 20.02038551 -14 0.149739614 2.302054317 0.503519368 0.303718004 0.172200046 173.3432709 1.541059441 67.7608533 0.897346672 1.00E-14 14 -1.798534949 LGFSSPYEGVLNKS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LGFSSPYEGVLNKSPK 16 1 M0R0P8;M0R240;M0QXP0;Q13459;Q13459-2 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 LGFSSPYEGVLNKS(1)PK;LGFSSPYEGVLNKS(1)PK ; 166.29 2.66E-12 711930000 609810 546420 249170 496370 616700 742320 1074960 972870 424470 1199400 TRUE FALSE FALSE 567065.4681 503119.6892 345655.297 1155574.445 539347.7355 650740.1058 805993.6382 751368.7386 461263.4014 899062.4332 0.630729799 0.55960484 0.384461951 1.285310566 0.599900202 0.723798573 0.896482389 0.835724763 0.513049355 1 19.77806178 LGFSSS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 LGFSSSPTK 9 0 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.002)S(0.061)S(0.926)PT(0.011)K;LGFS(0.015)S(0.346)S(0.636)PT(0.003)K ; 149.94 7.28E-05 1252280000 2937440 2506160 1877570 4061900 3257900 2946210 4195600 4054900 2570600 5965100 TRUE FALSE FALSE 3590863.394 2799233.611 2572161.275 4283791.312 2933532.037 3100469 3299175.785 3060429.417 3086495.841 4478110.35 0.801870234 0.625092593 0.574385416 0.956606912 0.65508257 0.692361009 0.736733918 0.683419831 0.689240684 1 22.09445865 -10.1086063 4.688279577 1.00001833 0.710825346 0.426030344 0.100000056 132861635.1 1.578684002 27459.02111 0.023750566 7.79E-11 10.1086063 -0.289192984 LGFSSS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 LGFSSSPTK 9 0 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.007)S(0.043)S(0.865)PT(0.085)K;LGFS(0.012)S(0.043)S(0.943)PT(0.002)K ; 149.94 7.28E-05 1283000000 4083000 4200200 2321400 1751930 4065500 4740700 5646300 5166000 3369300 5660300 TRUE FALSE FALSE 3796802.785 3867360.855 3220308.249 4078581.578 3555567.081 4155840.634 4233536.02 3989814.573 3661353.637 4242924.038 0.894855234 0.911484821 0.758983244 0.961266698 0.837999231 0.979475616 0.997787371 0.940345511 0.862931696 1 22.01662742 -6.266232344 24.99445794 0.954984593 0.873639024 0.317784709 0.060929057 531.1063178 2769615.47 0.020972625 0.019087249 5.42E-07 6.266232344 -0.081345569 LGFSSS(ph)PTKK ddPTM_HeLa_A485_30min_R1 1 LGFSSSPTKK 10 1 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.039)S(0.049)S(0.912)PT(0.001)KK 87.667 0.0021226 6954700000 8946100 6222300 3496800 12225000 8222000 8436300 15105000 13409000 5912500 16117000 TRUE FALSE FALSE 10936129.08 6949943.858 4790411.834 12892820.79 7403388.811 8878011.623 11877693.35 10120421.73 7099084.517 12099328.51 0.903862481 0.574407402 0.395923776 1.065581514 0.611884271 0.733760689 0.981682028 0.836444908 0.586733761 1 23.52842365 -5.257071375 24.94048197 0.817168056 0.619698864 0.197186845 0.189115579 625.7669367 3572998.081 0.051417579 0.085253573 5.53E-06 5.257071375 -0.197469191 LGFSSS(ph)PTKK ddPTM_HeLa_A486_30min_R1 2 LGFSSSPTKK 10 1 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.002)S(0.018)S(0.978)PT(0.001)KK;LGFSS(0.147)S(0.851)PT(0.002)KK ; 122.7 8.24E-05 18094200000 29586000 27639000 11014500 14290500 24568000 34422000 43369000 41722000 20562300 49490000 TRUE FALSE FALSE 27512174.18 25448784.98 15279609.38 33269006.2 21486452.35 30175363.62 32517617.49 32222811.38 22344656.72 37097381.87 0.741620373 0.685999488 0.411878375 0.896801998 0.579190532 0.813409521 0.876547504 0.868600687 0.602324358 1 25.14481404 -6.354101091 7.173058753 0.828033765 0.663650686 0.248594223 0.146997874 0.411551393 27.71362594 0.050614954 0.04455796 4.42E-07 6.354101091 -0.164383079 LGFVDVQNCIS(ph)R ddPTM_HeLa_A485_30min_R1 2 LGFVDVQNCISR 12 0 Q14573 Q14573 ITPR3 "Inositol 1,4,5-trisphosphate receptor type 3" 1 0 LGFVDVQNCIS(1)R;LGFVDVQNCIS(1)R ; 107.61 0.00050187 140473000 215027 204099 158293 188413 179407 183857 202795 281260 189905 370320 TRUE FALSE FALSE 262859.0143 227966.6026 216852.1678 198705.5251 161544.6091 193483.4682 159466.1916 212280.544 228017.1916 278006.0392 0.945515482 0.820005937 0.780026824 0.714752549 0.581083093 0.69596858 0.573606933 0.763582491 0.820187907 1 18.0847567 -10.21817186 14.65338911 0.999999963 0.735682817 0.340480641 0.106400654 0 0 0.111515619 0.02704651 6.05E-11 10.21817186 -0.264317146 LGGAVPFAPPEVS(ph)PEQAK ddPTM_HeLa_A485_30min_R1 2 LGGAVPFAPPEVSPEQAK 18 0 A0A096LNZ0;A0A096LP25;Q6ZSR9 A0A096LNZ0 AAK1 Uncharacterized protein FLJ45252 1 0 LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK ; 271.64 5.84E-69 946920000 1383270 1270930 1026170 1899060 1754600 1461480 2275140 2212590 1216110 2515940 TRUE FALSE FALSE 1690973.639 1419554.208 1405792.985 2002800.839 1579905.863 1538000.833 1789037.753 1669948.833 1460172.122 1888762.46 0.895281262 0.751579004 0.744293163 1.060377301 0.836476739 0.814290238 0.947201033 0.884149737 0.773084045 1 20.84900984 LGGAVPFAPPEVS(ph)PEQAK ddPTM_HeLa_A486_30min_R1 4 LGGAVPFAPPEVSPEQAK 18 0 A0A096LNZ0;A0A096LP25;Q6ZSR9 A0A096LNZ0 AAK1 Uncharacterized protein FLJ45252 1 0 LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK ;;; 256.71 1.02E-57 1322480000 1740970 1849300 1086800 901390 1919400 2054460 2483960 2354110 1548910 2655030 TRUE FALSE FALSE 1618936.993 1702754.733 1507638.066 2098481.474 1678650.954 1801001.613 1862446.935 1818130.543 1683170.766 1990193.207 0.8134572 0.855572578 0.75753352 1.054410932 0.843461302 0.904938077 0.935812126 0.913544744 0.845732344 1 20.92447706 -1.516817879 0.325773166 0.931161107 5.35E-16 0.222924013 0.074102291 65.5708117 1.282064454 0.06730944 34.51294884 0.030421605 1.516817879 -0.931161107 LGGEAAHLPHLRPLPESQPS(ph)SSPLLQTAPGVK ddPTM_HeLa_A486_30min_R1 1 LGGEAAHLPHLRPLPESQPSSSPLLQTAPGVK 32 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 LGGEAAHLPHLRPLPES(0.013)QPS(0.329)S(0.329)S(0.329)PLLQTAPGVK 121.15 9.60E-06 356210000 436580 447990 271180 151800 431800 412660 482120 454840 329200 459930 TRUE FALSE FALSE 405977.9965 412489.6408 376188.1585 353398.0715 377639.6176 361750.2048 361488.4767 351282.8611 357735.3211 344760.5344 1.177565168 1.196452609 1.091157836 1.02505373 1.095367886 1.049279627 1.048520467 1.018918426 1.037634199 1 18.39523511 -4.899835173 3.343505795 1.043576535 1.188114478 0.849093989 0.024556429 0.083694607 1.831876339 0.006702497 0.015974167 1.26E-05 4.899835173 0.144537942 LGGEAAHLPHLRPLPESQPSSS(ph)PLLQTAPGVK ddPTM_HeLa_A485_30min_R1 1 LGGEAAHLPHLRPLPESQPSSSPLLQTAPGVK 32 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 LGGEAAHLPHLRPLPES(0.004)QPS(0.021)S(0.131)S(0.845)PLLQTAPGVK 139 3.13E-07 474020000 173600 175390 158200 184520 226210 207030 230570 258570 164180 229710 TRUE FALSE FALSE 212216.7211 195900.3348 216724.7633 194599.8604 203687.7381 217869.7707 181306.8359 195155.3021 197129.4201 172447.5245 1.230616222 1.135999693 1.256757752 1.128458416 1.181157797 1.263397496 1.051373955 1.131679348 1.143126993 1 17.39579789 -8.78479219 0.278640497 0.950268946 1.212715263 0.499630138 0.05700576 4.207129551 0.587311441 0.32281843 0.087377976 1.64E-09 8.78479219 0.262446316 LGGKPS(ph)SPSLSPLMGFGSNK ddPTM_HeLa_A485_30min_R1 2 LGGKPSSPSLSPLMGFGSNK 20 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5;A0A087WYL6;Q8TEW8-6;Q8TEW8-3 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 LGGKPS(0.497)S(0.497)PS(0.005)LS(0.001)PLMGFGSNK;LGGKPS(0.614)S(0.372)PS(0.014)LSPLMGFGSNK ; 162.61 1.31E-13 619580000 253420 251150 151908 310890 346480 304480 451660 509500 241520 475880 TRUE FALSE FALSE 309792.4047 280519.8078 208105.0906 327873.1335 311983.2346 320422.102 355159.1513 384544.3261 289990.8486 357251.8739 0.867154037 0.785215777 0.582516442 0.917764629 0.873286489 0.896908107 0.994142165 1.076395547 0.811726599 1 18.44658205 -5.443040649 10.55610459 0.941664267 0.74880036 0.465736412 0.095319134 0.563620267 72.49842104 0.027364886 0.040586218 3.61E-06 5.443040649 -0.192863907 LGGKS(ph)PPPPPPPPR ddPTM_HeLa_A485_30min_R1 2 LGGKSPPPPPPPPR 14 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 LGGKS(1)PPPPPPPPR;LGGKS(1)PPPPPPPPR ; 57.595 0.01724 396140000 366530 400200 385560 521180 574070 453950 669480 666040 432460 772090 TRUE FALSE FALSE 448063.334 446999.9087 528194.6885 549650.7437 516913.5751 477718.1201 526440.1289 502692.6457 519250.7552 579622.1723 0.77302656 0.771191873 0.911274126 0.948291439 0.891811252 0.82418883 0.908247051 0.867276425 0.8958435 1 19.14475326 -1 0.070778487 1.092308618 0.367772388 0.476617651 0.050008088 268.8593039 1.407000577 2.487634144 19.37758004 0.1 1 -0.72453623 LGGKS(ph)PPPPPPPPR ddPTM_HeLa_A486_30min_R1 2 LGGKSPPPPPPPPR 14 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 LGGKS(1)PPPPPPPPR;LGGKS(1)PPPPPPPPR ; 63.145 0.010759 505690000 434280 466610 314180 238520 543550 542440 665230 680610 416450 622400 TRUE FALSE FALSE 403839.2146 429634.1242 435838.91 555286.6141 475372.8906 475519.2679 498782.4179 525649.9606 452548.2213 466546.9889 0.865591729 0.920880714 0.934180094 1.190205118 1.018917498 1.019231244 1.069093639 1.126681713 0.969994946 1 18.83166287 -5.04372491 13.40068187 1.05927081 0.90179285 0.555951883 0.061785243 1.663102207 509.53564 0.016254386 0.028234793 9.04E-06 5.04372491 -0.15747796 LGGLRPES(ph)PES(ph)LTSVSR ddPTM_HeLa_A485_30min_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 LGGLRPES(1)PES(0.995)LT(0.004)S(0.001)VSR 102.9 0.00032688 70371000 70096 69157 72804 76226 99104 70851 85648 98687 72849 97141 TRUE FALSE FALSE 85688.61337 77244.30956 99737.22923 80390.03337 89236.85778 74560.6488 67348.60512 74483.85851 87469.12609 72925.53645 1.175015194 1.059221685 1.367658492 1.102357792 1.223670913 1.022421671 0.923525673 1.021368675 1.199430684 1 16.15413647 -6.269406224 24.26949415 1.02782089 1.184056123 0.369011217 0.099393842 456.4545121 1390498.694 0.034686321 0.031145877 5.38E-07 6.269406224 0.156235233 LGGLRPES(ph)PESLTSVSR ddPTM_HeLa_A485_30min_R1 7 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LGGLRPES(0.999)PES(0.001)LTSVSR;LGGLRPES(0.999)PESLTSVSR;LGGLRPES(0.674)PES(0.17)LT(0.078)S(0.078)VSR;LGGLRPES(1)PESLTSVSR;LGGLRPES(0.997)PES(0.002)LTSVSR;LGGLRPES(0.979)PES(0.021)LTSVSR;LGGLRPES(0.999)PES(0.001)LTSVSR ;;;;;; 241.44 1.04E-42 66404400000 3651800 3969560 4057080 3995600 5050170 3824370 4811340 4426870 4020670 5080430 TRUE FALSE FALSE 4464130.311 4433765.511 5557962.721 4213869.511 4547357.343 4024608.1 3783357.904 3341173.191 4827581.589 3813972.299 1.170467418 1.162505955 1.457263526 1.104850581 1.192289032 1.055227407 0.991973094 0.876034992 1.265762101 1 21.86286293 -6.083064682 1.654024116 1.022608208 1.241944305 0.343643906 0.125175112 0.407463041 2.238385732 0.049774504 0.051757783 8.26E-07 6.083064682 0.219336097 LGGLRPES(ph)PESLTSVSR ddPTM_HeLa_A486_30min_R1 9 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LGGLRPES(1)PESLTSVSR;LGGLRPES(1)PESLTSVSR;LGGLRPES(1)PESLTSVSR;LGGLRPES(1)PESLTSVSR;LGGLRPES(0.958)PES(0.04)LT(0.002)SVSR;LGGLRPES(0.992)PES(0.008)LTSVSR;LGGLRPES(0.988)PES(0.012)LTSVSR;LGGLRPES(1)PESLTSVSR;LGGLRPES(0.999)PES(0.001)LTSVSR ;;;;;;;; 273.32 1.33E-59 1.33E+11 4779829 5587371 4730600 1662089 5866436 4878856 5558927 5451648 4518649 4973557 TRUE FALSE FALSE 4444787.67 5144607.373 6562415.01 3869427.189 5130612.895 4276952.351 4168024.668 4210426.759 4910329.134 3728145.955 1.192224694 1.379937222 1.760235541 1.037895843 1.376183486 1.147206253 1.117988598 1.129362104 1.317096807 1 21.83002691 -5.292139431 24.99712479 1.172830826 1.437713212 0.371359405 0.168350884 732.1267072 596123.22 0.046956669 0.069655486 5.10E-06 5.292139431 0.264882386 LGGLRPESPESLTSVS(ph)R ddPTM_HeLa_A485_30min_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LGGLRPES(0.106)PES(0.072)LT(0.138)S(0.138)VS(0.547)R 124.2 0.00027088 14521000000 232570 243860 243580 267280 291700 241010 314520 291200 242360 355780 TRUE FALSE FALSE 284304.3941 272377.3057 333690.3782 281880.8296 262657.3238 253628.9109 247320.2326 219782.7434 290999.4289 267090.5936 1.064449295 1.019793704 1.249352789 1.055375353 0.983401625 0.949598814 0.92597882 0.822877138 1.089515827 1 18.02696964 -5.74490226 3.024999911 0.947194269 1.107873283 0.394091172 0.083437323 0.242970999 4.576356358 0.026481627 0.033372739 1.80E-06 5.74490226 0.160679014 LGGNVVVSLEGKPL ddPTM_HeLa_A486_30min_R1 1 LGGNVVVSLEGKPL 14 1 Q9Y281;Q9Y281-3 Q9Y281 CFL2 Cofilin-2 0 0 106.49 0.032114 6840300 14028 15709 9849.9 7057.3 17934 15870 17393 16579 12766 16837 FALSE FALSE TRUE 13044.70964 14464.16163 13664.04507 16429.75106 15684.55049 13912.12075 13041.08744 12804.32362 13872.56716 12620.90561 1.033579526 1.146047841 1.082651712 1.301788601 1.242743665 1.102307646 1.033292526 1.014532872 1.099173672 1 13.62352781 -6.549654017 4.585373498 1.039704549 1.164967193 0.383417321 0.074233327 0.228405778 11.71040086 0.030758578 0.024228022 2.82E-07 6.549654017 0.125262643 LGGPEGPGS(ph)PLLAT ddPTM_HeLa_A485_30min_R1 2 LGGPEGPGSPLLAT 14 0 Q9C086 Q9C086 INO80B INO80 complex subunit B 1 0 LGGPEGPGS(1)PLLAT;LGGPEGPGS(1)PLLAT ; 73.233 0.0087032 102492000 198042 254010 249770 209890 308120 263700 317550 353740 247560 309330 TRUE FALSE FALSE 242095.7597 283714.2599 342170.3168 221355.7592 277442.4909 277506.9242 249702.8484 266984.7104 297243.0212 232219.7238 1.042528842 1.221749192 1.473476547 0.953216874 1.194741284 1.195018751 1.075286992 1.149707294 1.280007643 1 17.82513099 -5.2787624 24.99788429 1.131612138 1.24350135 0.15317066 0.132825159 1675.872428 2418354.254 0.037278329 0.055441501 5.26E-06 5.2787624 0.111889212 LGGPEGPGS(ph)PLLAT ddPTM_HeLa_A486_30min_R1 2 LGGPEGPGSPLLAT 14 0 Q9C086 Q9C086 INO80B INO80 complex subunit B 1 0 LGGPEGPGS(1)PLLAT;LGGPEGPGS(1)PLLAT ; 151.26 5.13E-08 98092000 211160 234700 194787 77189 262430 207820 246670 235280 194102 233870 TRUE FALSE FALSE 196358.7744 216101.5172 270213.743 179699.8929 229513.5823 182181.2814 184950.557 181711.8801 210926.9176 175307.4298 1.120082444 1.232700277 1.541370741 1.025055773 1.309206248 1.03921027 1.055006951 1.036532681 1.203182991 1 17.41952762 -6.267501938 24.76848803 1.068333638 1.249131848 0.306306138 0.134550085 562.1581773 2296678.986 0.046439897 0.042007066 5.40E-07 6.267501938 0.18079821 LGGQLPVVAISLSEYPASGALSQPTSIPGS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LGGQLPVVAISLSEYPASGALSQPTSIPGSPK 32 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 LGGQLPVVAISLSEYPAS(0.009)GALS(0.024)QPT(0.024)S(0.024)IPGS(0.918)PK 51.871 0.01894 54017000 8209.2 6451.7 6771.7 9560.2 9523.3 10270 11842 9680.9 5904.1 16929 TRUE FALSE FALSE 10035.30822 7206.170193 9276.833624 10082.44952 8575.126814 10807.72132 9311.85996 7306.644096 7088.998714 12708.91186 0.789627651 0.567017088 0.729947121 0.793336962 0.674733361 0.850404932 0.732703167 0.574922871 0.557797457 1 13.63355289 LGGQLPVVAISLSEYPASGALSQPTSIPGS(ph)PK ddPTM_HeLa_A486_30min_R1 1 LGGQLPVVAISLSEYPASGALSQPTSIPGSPK 32 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 LGGQLPVVAISLSEYPASGALSQPT(0.001)S(0.004)IPGS(0.995)PK 119.75 1.84E-05 56970000 21737 22032 11105 18612 28031 26790 31551 30072 16935 40915 TRUE FALSE FALSE 20213.34855 20286.10408 15405.1534 43329.6766 24515.0906 23484.92218 23656.60609 23225.26207 18402.93944 30669.61769 0.65906751 0.661439744 0.502293624 1.412788286 0.79932821 0.765738994 0.771336843 0.757272631 0.60003811 1 14.90452256 LGGS(ph)AVISLEGKPL ddPTM_HeLa_A485_30min_R1 4 LGGSAVISLEGKPL 14 1 P23528;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 1 0 LGGS(0.972)AVIS(0.028)LEGKPL;LGGS(0.999)AVIS(0.001)LEGKPL;LGGS(0.999)AVIS(0.001)LEGKPL;LGGS(0.986)AVIS(0.014)LEGKPL ;;; 158.89 8.21E-08 989607000 1666200 1540020 1196080 1750970 2011300 1638580 2472640 2599150 1272780 2161090 TRUE FALSE FALSE 2036840.442 1720111.943 1638559.765 1846621.057 1811047.91 1724373.515 1944340.264 1961704.387 1528215.271 1622370.035 1.255472178 1.060246371 1.009979061 1.138224337 1.116297682 1.062873129 1.198456716 1.209159652 0.94196468 1 20.62967148 -7.774593772 24.99962503 0.970982235 1.124606826 0.435962956 0.072636169 261.6970117 497333.7418 0.070199137 0.018567045 1.68E-08 7.774593772 0.15362459 LGGS(ph)AVISLEGKPL ddPTM_HeLa_A486_30min_R1 3 LGGSAVISLEGKPL 14 1 P23528;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 1 0 LGGS(0.996)AVIS(0.004)LEGKPL;LGGS(0.981)AVIS(0.019)LEGKPL;LGGS(0.998)AVIS(0.002)LEGKPL ;; 188.39 1.80E-16 1085380000 1252900 1426090 959810 744700 1435490 1467440 1761960 1801130 1101890 1543710 TRUE FALSE FALSE 1165078.18 1313081.435 1331474.137 1733699.235 1255437.459 1286402.173 1321098.972 1391052.017 1197402.712 1157154.968 1.006847148 1.134749857 1.150644618 1.498242917 1.084934597 1.111693946 1.14167852 1.202131137 1.034781637 1 20.14215065 LGGSAVISLEGKPL ddPTM_HeLa_A485_30min_R1 4 LGGSAVISLEGKPL 14 1 P23528;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 ;;; ;;; 196.11 8.13E-14 548479000 1831380 1975410 1668940 2037080 2534300 2335400 2963780 3228060 1797310 2884580 FALSE FALSE TRUE 2238764.163 2206417.016 2286350.356 2148360.522 2281976.194 2457677.933 2330544.191 2436373.224 2158013.631 2165507.293 1.033828965 1.018891519 1.055803582 0.992081869 1.053783657 1.134920183 1.076211657 1.125081976 0.996539535 1 21.0462736 -5.997222755 24.98038016 1.077125418 1.026398645 0.139174435 0.044985747 128.1177987 1152348.868 0.013339809 0.01504365 1.01E-06 5.997222755 -0.050726773 LGGSAVISLEGKPL ddPTM_HeLa_A486_30min_R1 4 LGGSAVISLEGKPL 14 1 P23528;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 ;;; ;;; 178.53 3.23E-11 485089000 1900110 1949730 1478670 905290 2542100 2027040 2326290 2261720 1758550 2185720 FALSE FALSE TRUE 1766922.101 1795226.294 2051250.624 2107560.871 2223246.114 1776964.414 1744227.637 1746775.729 1910982.53 1638401.485 1.078442688 1.09571818 1.251982889 1.286351904 1.356960509 1.084572023 1.064591098 1.066146329 1.166370116 1 20.6438575 -6.46797559 24.95446859 1.079044985 1.214197785 0.390793891 0.085866797 356.4627225 162018.6183 0.033154303 0.029239209 3.40E-07 6.46797559 0.1351528 LGGSVLGQIPFLQNCEDEDS(ph)DEDDELDSVQHKK ddPTM_HeLa_A485_30min_R1 1 LGGSVLGQIPFLQNCEDEDSDEDDELDSVQHKK 33 1 Q9NRL3;Q9NRL3-3;F5GYK2;Q9NRL3-2;R4GN16 Q9NRL3 STRN4 Striatin-4 1 0 LGGSVLGQIPFLQNCEDEDS(1)DEDDELDSVQHKK 129 2.32E-06 959600000 62043 54140 35619 96315 69825 61012 111020 97493 59169 115540 TRUE FALSE FALSE 75844.2513 60471.20204 48795.95033 101576.4446 62872.97783 64206.49398 87299.67005 73582.68889 71043.67557 86738.00436 0.874406229 0.697170779 0.562567132 1.171071958 0.724860784 0.740234854 1.006475428 0.84833274 0.819060527 1 16.40437663 -10.06447516 0.029523908 1.915151687 4.79E-08 0.11811089 0.158536142 1284.349777 7.098422978 273.3268596 191.2335158 8.62E-11 10.06447516 -1.915151639 LGGSVLGQIPFLQNCEDEDS(ph)DEDDELDSVQHKK ddPTM_HeLa_A486_30min_R1 1 LGGSVLGQIPFLQNCEDEDSDEDDELDSVQHKK 33 1 Q9NRL3;Q9NRL3-3;F5GYK2;Q9NRL3-2;R4GN16 Q9NRL3 STRN4 Striatin-4 1 0 LGGSVLGQIPFLQNCEDEDS(1)DEDDELDSVQHKK 191.61 2.26E-21 842770000 48298 63836 28234 28326 58591 68613 90171 88458 49684 80717 TRUE FALSE FALSE 44912.55961 58777.40287 39166.96093 65944.35952 51241.97044 60148.22567 67609.26207 68318.04442 53990.64912 60504.93782 0.742295773 0.971448034 0.647334951 1.089900459 0.846905596 0.994104413 1.117417264 1.129131719 0.892334594 1 15.88476527 -5.665777785 1.00631188 1.0388311 0.807079904 0.332064478 0.124702382 0.634396512 1.356943079 0.053715941 0.093574339 2.16E-06 5.665777785 -0.231751196 LGHDPYRLT(ph)PDPYR ddPTM_HeLa_A485_30min_R1 3 LGHDPYRLTPDPYR 14 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6 P18583-10 SON Protein SON 1 0 LGHDPYRLT(1)PDPYR;LGHDPYRLT(1)PDPYR;LGHDPY(0.001)RLT(0.997)PDPY(0.001)R ;; 145.62 9.47E-08 1149820000 243566 313911 317426 242949 362214 315007 302558 384295 232356 296385 TRUE FALSE FALSE 297746.4164 350620.1608 434855.0866 256220.6887 326150.7023 331500.2794 237914.0116 290046.0487 278987.7179 222501.6741 1.338176073 1.575809091 1.954390179 1.151544993 1.465834825 1.489877687 1.069268412 1.303567939 1.25386795 1 17.76345667 -6.804240608 0.433805867 1.038687712 1.605459611 0.381788859 0.208092045 1.198520307 0.520494404 0.224342521 0.231888663 1.57E-07 6.804240608 0.566771899 LGHDPYRLT(ph)PDPYR ddPTM_HeLa_A486_30min_R1 3 LGHDPYRLTPDPYR 14 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6 P18583-10 SON Protein SON 1 0 LGHDPYRLT(1)PDPYR;LGHDPYRLT(1)PDPYR;LGHDPYRLT(1)PDPYR ;; 141.6 1.21E-07 937490000 176339 184977 162349 66992 219811 169970 176766 174652 157609 187032 TRUE FALSE FALSE 163978.5467 170318.7488 225214.8807 155960.7616 192240.2547 149000.8295 132537.2772 134887.5522 171270.675 140197.9698 1.169621407 1.214844616 1.606406148 1.112432382 1.371205696 1.062788782 0.945358034 0.962122008 1.221634488 1 17.09710593 -6.339671094 5.703014606 1.026949002 1.297262422 0.44104322 0.144369698 0.215214989 12.0430209 0.051101795 0.045022439 4.57E-07 6.339671094 0.27031342 LGHPEALSAGTGS(ph)PQPPSFTYAQQR ddPTM_HeLa_A485_30min_R1 6 LGHPEALSAGTGSPQPPSFTYAQQR 25 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 LGHPEALSAGT(0.002)GS(0.998)PQPPSFTYAQQR;LGHPEALS(0.001)AGT(0.063)GS(0.936)PQPPSFTYAQQR;LGHPEALSAGTGS(1)PQPPSFTYAQQR;LGHPEALSAGT(0.001)GS(0.983)PQPPS(0.016)FT(0.001)YAQQR;LGHPEALSAGT(0.011)GS(0.989)PQPPSFTYAQQR;LGHPEALSAGT(0.1)GS(0.9)PQPPSFTYAQQR ;;;;; 286.71 5.10E-76 35392810000 837354 1063388 965311 760219 1335828 915524 1068237 1251848 940987 1008335 TRUE FALSE FALSE 1023620.508 1187741.976 1322419.709 801747.839 1202828.274 963459.421 839999.4383 944830.3152 1129834.46 756975.6415 1.352250261 1.569062347 1.74697789 1.059146153 1.588992047 1.272774668 1.109678294 1.248164754 1.492563826 1 19.52988735 -5.81079903 0.932481815 1.232354523 1.527178376 0.232031484 0.208090437 0.895581279 1.686830149 0.102780441 0.154868201 1.55E-06 5.81079903 0.294823853 LGHPEALSAGTGS(ph)PQPPSFTYAQQR ddPTM_HeLa_A486_30min_R1 4 LGHPEALSAGTGSPQPPSFTYAQQR 25 0 Q15942;Q15942-2;H0Y2Y8;H7C3D3 Q15942 ZYX Zyxin 1 0 LGHPEALSAGT(0.062)GS(0.938)PQPPSFTYAQQR;LGHPEALSAGT(0.006)GS(0.994)PQPPSFTYAQQR;LGHPEALSAGT(0.005)GS(0.995)PQPPSFTYAQQR;LGHPEALSAGTGS(1)PQPPSFTYAQQR ;;; 307.68 2.80E-91 28019100000 488372 548694 541200 131181 701650 487610 550055 567512 501549 448947 TRUE FALSE FALSE 454139.6448 505213.4891 750767.1338 305395.9975 613642.5144 427453.6359 412425.4211 438301.9063 545023.6711 336527.749 1.349486472 1.501253583 2.230921925 0.907491279 1.823452943 1.270188378 1.22553169 1.302424265 1.619550461 1 18.36036594 -6.059059415 1.099918644 1.299821447 1.596663457 0.109504986 0.351166239 1.188937068 3.042811386 0.168521583 0.184924515 8.73E-07 6.059059415 0.296842009 LGHVVMGNNAVS(ph)PYQQVIEK ddPTM_HeLa_A485_30min_R1 2 LGHVVMGNNAVSPYQQVIEK 20 0 P60228;H0YAW4;E5RGA2 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 1 0 LGHVVMGNNAVS(1)PYQQVIEK;LGHVVMGNNAVS(1)PYQQVIEK ; 293.88 6.81E-87 1944610000 753350 818960 709820 786040 1109070 870090 1155590 1274410 740280 1083660 TRUE FALSE FALSE 920930.1085 914730.248 972411.9561 828979.3748 998647.0966 915646.567 908688.7562 961858.9493 888847.4057 813523.5053 1.132026429 1.124405432 1.195308986 1.018998676 1.227557766 1.12553179 1.116979104 1.182337011 1.092589704 1 19.6338245 -8.036327453 8.19789349 1.000001334 1.139210233 0.39525533 0.053118686 0.523540115 116.8340567 0.047712617 0.012337775 9.20E-09 8.036327453 0.139208899 LGHVVMGNNAVS(ph)PYQQVIEK ddPTM_HeLa_A486_30min_R1 2 LGHVVMGNNAVSPYQQVIEK 20 0 P60228;H0YAW4;E5RGA2 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 1 0 LGHVVMGNNAVS(1)PYQQVIEK;LGHVVMGNNAVS(1)PYQQVIEK ; 169.19 1.15E-13 2361800000 675950 842060 458540 655230 886160 1031880 1396930 1247160 681550 1111150 TRUE FALSE FALSE 628569.3956 775332.0989 636098.9681 1525408.553 775009.5497 904577.137 1047403.339 963208.8933 740627.3028 832910.8076 0.754665914 0.930870499 0.763705984 1.83141885 0.930483243 1.086043222 1.257521609 1.156437021 0.889203617 1 19.66780249 LGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR ddPTM_HeLa_A485_30min_R1 22 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;O60256-4;I3L0S1 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.012)DLVDGRHS(0.988)PPMVR;LGIAVIHGEAQDAES(0.004)DLVDGRHS(0.996)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.014)DLVDGRHS(0.986)PPMVR;LGIAVIHGEAQDAES(0.038)DLVDGRHS(0.962)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR ;;;;;;;;;;;;;;;;;;;;; 295.3 2.83E-92 57964837000 3293328.5 4533083.9 4827496.6 3705448.2 5561055.6 4502778.7 5068265.6 5605732 4549550.9 4969330 TRUE FALSE FALSE 4025918.063 5063188.63 6613388.481 3907867.452 5007377.378 4738537.23 3985389.251 4230917.438 5462604.035 3730567.485 1.079170416 1.357216737 1.772756694 1.047526273 1.342256211 1.270192068 1.068306435 1.134121673 1.464282326 1 21.83096368 LGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR ddPTM_HeLa_A486_30min_R1 23 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;O60256-4;I3L0S1 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAES(0.064)DLVDGRHS(0.936)PPMVR;LGIAVIHGEAQDAES(0.004)DLVDGRHS(0.996)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR;LGIAVIHGEAQDAESDLVDGRHS(1)PPMVR ;;;;;;;;;;;;;;;;;;;;;; 284.98 9.80E-78 56997670000 3866158 4455536 4176597 1309130.4 5354750 4079704 4598419 4617022 4005403 4344221 TRUE FALSE FALSE 3595160.289 4102463.101 5793887.212 3047721.731 4683107.324 3576391.6 3447845.929 3565826.879 4352594.557 3256399.785 1.104029151 1.259815554 1.779230928 0.935917557 1.438124196 1.098265519 1.058790737 1.095021224 1.336627823 1 21.6348464 -6.285397889 24.2788238 1.119995464 1.307017576 0.150113827 0.220792297 1110.357067 1125197.487 0.076777352 0.067749684 5.18E-07 6.285397889 0.187022111 LGIHEDS(ph)TNR ddPTM_HeLa_A486_30min_R1 1 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 LGIHEDS(0.5)T(0.5)NR 67.656 0.011321 163700000 102940 94386 91839 46108 122830 81532 106030 101540 96673 101860 TRUE FALSE FALSE 95724.43758 86906.50961 127401.5203 107341.7542 107423.5161 71473.4108 79500.17253 78421.5586 105052.6935 76353.593 1.253699188 1.138211133 1.668572693 1.405850726 1.406921558 0.936084446 1.041210628 1.027084064 1.375870988 1 16.22040843 -6.247696384 24.46511991 1.075565317 1.379577827 0.444924923 0.166714884 588.5436029 1047718.514 0.057099158 0.056786812 5.65E-07 6.247696384 0.304012509 LGIHEDSQNR ddPTM_HeLa_A485_30min_R1 6 LGIHEDSQNR 10 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;;;; ;;;;; 188.04 2.99E-09 2555590000 1504560 2094910 1961490 1378090 2503690 1943740 2290650 2540220 1862990 2134870 FALSE FALSE TRUE 1839244.181 2339891.501 2687126.775 1453371.567 2254413.833 2045511.221 1801233.915 1917227.062 2236875.005 1602686.198 1.147600936 1.459981064 1.676639368 0.906834768 1.406647062 1.276301763 1.123884336 1.196258546 1.395703667 1 20.61206055 -13.99999975 0.107933625 0.10293323 1.45586832 0.150962116 0.202150358 320.5818123 2.307977071 64.22330326 2.706212745 1.00E-14 13.99999975 1.35293509 LGIHEDSQNR ddPTM_HeLa_A486_30min_R1 4 LGIHEDSQNR 10 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;; ;;; 196.27 2.24E-10 1950140000 1231880 1434990 1251210 273618 1855710 1264420 1441170 1460740 1212450 1227050 FALSE FALSE TRUE 1145531.573 1321276.166 1735712.021 636996.5319 1622949.548 1108428.716 1080574.023 1128161.39 1317546.142 919788.6932 1.245429066 1.436499683 1.887076927 0.6925466 1.764480864 1.205090609 1.174806812 1.226544094 1.432444378 1 19.81094294 -13.633833 0.11059442 1.04E-14 1.538850796 0.101057699 0.312767755 351.6649828 2.797009619 81.45145364 3.827520988 2.32E-14 13.633833 1.538850796 LGIHEDSTNR ddPTM_HeLa_A485_30min_R1 9 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;;;;; ;;;;;;;; 200.6 3.23E-13 4018393000 2132230 3066736 3078813 2070040 3685275 2811551 3339552 3650325 2767102 2896050 FALSE FALSE TRUE 2606537.207 3425364.098 4217794.049 2183121.044 3318356.081 2958759.463 2626029.434 2755077.07 3322433.99 2174118.033 1.198894066 1.575518921 1.94000233 1.004140994 1.526299875 1.360901027 1.207859644 1.26721596 1.528175536 1 21.05199884 -5.271538773 24.99644377 1.293585669 1.571876504 0.247563449 0.237987531 1014.719531 2511473.623 0.065857965 0.098982194 5.35E-06 5.271538773 0.278290836 LGIHEDSTNR ddPTM_HeLa_A486_30min_R1 6 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;; ;;;;; 192.91 1.36E-09 2851686000 1785495 2100206 1854010 416110.6 2712250 1818697 2114590 2163835 1842020 1820415 FALSE FALSE TRUE 1660341.021 1933778.028 2571932.324 968726.5059 2372054.314 1594324.655 1585497.216 1671177.007 2001687.777 1364571.235 1.216749246 1.41713234 1.884791543 0.709912741 1.738314757 1.168370411 1.161901391 1.224690191 1.466898704 1 20.38001628 -13.80149144 0.124626035 5.87E-09 1.479574906 0.091376901 0.310764361 347.1608818 2.901113175 88.62770768 2.621769304 1.58E-14 13.80149144 1.4795749 LGIHEDSTNRR ddPTM_HeLa_A485_30min_R1 6 LGIHEDSTNRR 11 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;; ;;;;; 174.4 2.36E-08 1694950000 862476.2 1194943.6 1206705 715929.6 1370270.3 1109360.5 1321356.5 1504447 1017088.2 1043080.7 FALSE FALSE TRUE 1054331.055 1334681.859 1653115.395 755039.0212 1233841.378 1167444.9 1039037.889 1135479.014 1221208.472 783059.878 1.346424565 1.70444419 2.111097045 0.964216202 1.575666705 1.490875645 1.326894556 1.45005388 1.55953396 1 19.5787631 -12.32664626 0.160280622 5.02E-15 1.663071824 0.232203426 0.276472153 108.9403154 1.645651424 38.41290111 1.285474474 4.71E-13 12.32664626 1.663071824 LGIHEDSTNRR ddPTM_HeLa_A486_30min_R1 6 LGIHEDSTNRR 11 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;;;; ;;;;; 191.52 9.01E-11 1350231800 1017369.9 1070383.6 954970.3 160573.63 1342014.4 941635.2 1051055.8 1075479.6 886060.8 856034.6 FALSE FALSE TRUE 946057.5237 985562.5053 1324760.375 373823.5256 1173686.44 825465.8229 788070.5219 830616.3726 962865.2636 641677.9643 1.474349403 1.535914524 2.064525274 0.582571861 1.829089521 1.286417594 1.228140229 1.294444283 1.500542822 1 19.29148992 -1.000000496 0.038159836 6.01E-10 3.608583959 0.126929768 0.366371616 1793.129131 5.229480839 139.3982103 428.6797833 0.099999886 1.000000496 3.608583959 LGIMAPPKPINRPFLKPSYAFS(ph) ddPTM_HeLa_A485_30min_R1 1 LGIMAPPKPINRPFLKPSYAFS 22 3 H0YNU5;P54132 H0YNU5 BLM Bloom syndrome protein 1 0 LGIMAPPKPINRPFLKPS(0.001)Y(0.008)AFS(0.991) 78.012 0.026292 113720000 61312 71157 54549 64893 100290 82900 94852 106350 65052 101600 TRUE FALSE FALSE 74950.64288 79478.19217 74728.94507 68437.94027 90304.77546 87240.51581 74586.09533 80267.49575 78107.33971 76272.98981 0.982662972 1.042022771 0.979756337 0.897276224 1.183967951 1.143793052 0.977883462 1.052371173 1.024049797 1 16.21888463 -5.746463943 24.99987531 1.066012231 0.980495327 0.293101517 0.066896161 348.6966893 582109.2673 0.020983986 0.026975765 1.79E-06 5.746463943 -0.085516904 LGIMAPPKPINRPFLKPSYAFS(ph) ddPTM_HeLa_A486_30min_R1 1 LGIMAPPKPINRPFLKPSYAFS 22 3 H0YNU5;P54132 H0YNU5 BLM Bloom syndrome protein 1 0 LGIMAPPKPINRPFLKPS(0.01)YAFS(0.99) 89.979 0.0094265 72897000 97572 93183 59139 39320 107360 88630 103850 106830 80357 118610 TRUE FALSE FALSE 90732.70666 85798.83971 82039.2046 91538.94712 93893.90771 77695.73172 77865.63159 82507.14108 87322.40946 88909.28398 1.0205088 0.965015529 0.922729336 1.029576924 1.056064153 0.873876476 0.875787411 0.927992414 0.982151757 1 16.44004645 -6.267215319 24.99463152 0.923950252 0.994389223 0.294515817 0.050731176 628.1401535 2718189.153 0.018598031 0.016850722 5.40E-07 6.267215319 0.070438971 LGLAVIHGEAQCTELDMDDGRHS(ph)PPMVK ddPTM_HeLa_A485_30min_R1 37 LGLAVIHGEAQCTELDMDDGRHSPPMVK 28 1 C9JUN4;C9J168;B4DP31;Q14558;Q14558-2 C9JUN4 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 1 0 LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.003)ELDMDDGRHS(0.997)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.026)ELDMDDGRHS(0.974)PPMVK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 283.8 1.21E-77 23981366000 4888174.9 4964386.5 4639828.2 6262135.7 6973447 5446376.4 7067496.6 7428674.7 5500887.1 8537409.3 TRUE FALSE FALSE 5975532.543 5544928.317 6356293.731 6604220.317 6279146.131 5731540.247 5557468.215 5606780.582 6604864.684 6409190.281 0.93233814 0.865152706 0.991746765 1.030429747 0.979709738 0.89426901 0.867109256 0.874803265 1.030530285 1 22.61171067 -7.780010371 24.99494878 1.015265222 0.931169765 0.28609272 0.054172429 416.0478705 559948.6617 0.058468408 0.015204511 1.66E-08 7.780010371 -0.084095457 LGLAVIHGEAQCTELDMDDGRHS(ph)PPMVK ddPTM_HeLa_A486_30min_R1 39 LGLAVIHGEAQCTELDMDDGRHSPPMVK 28 1 C9JUN4;C9J168;B4DP31;Q14558;Q14558-2 C9JUN4 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 1 0 LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.005)ELDMDDGRHS(0.995)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.012)ELDMDDGRHS(0.988)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.001)ELDMDDGRHS(0.999)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.005)ELDMDDGRHS(0.995)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.022)ELDMDDGRHS(0.978)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCT(0.001)ELDMDDGRHS(0.999)PPMVK;LGLAVIHGEAQCT(0.002)ELDMDDGRHS(0.998)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK;LGLAVIHGEAQCTELDMDDGRHS(1)PPMVK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 292.8 3.32E-92 24665660900 6897032 7908382.7 5677743.8 3395710.09 8822025.7 8078321.2 9429981.4 9333355.3 7138707.7 9112863.3 TRUE FALSE FALSE 6413585.673 7281693.653 7876318.255 7905384.699 7715484.975 7081700.065 7070500.314 7208354.044 7757496.631 6830943.015 0.938901944 1.06598659 1.153035275 1.157290389 1.129490461 1.036708995 1.035069433 1.055250209 1.13564066 1 22.70365333 -9.129585184 14.34098236 0.999999971 1.081028036 0.117146996 0.064419774 0 0 0.066228494 0.016062769 7.42E-10 9.129585184 0.081028065 LGLDFPNLPYLIDGAHK ddPTM_HeLa_A485_30min_R1 1 LGLDFPNLPYLIDGAHK 17 0 H3BRM6;B9ZVX7;A0A3B3IRM5;Q5T8R1;A0A0A0MR85;P09488-2;Q03013-2;Q03013;P46439;P09488 H3BRM6 GSTM1;GSTM5;GSTM4 Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 5 0 0 147.64 5.72E-09 8180800 20914 19851 21051 27448 34612 24612 32007 28389 25392 43184 FALSE FALSE TRUE 25566.24715 22172.40177 28838.64091 28947.41474 31165.90775 25900.64626 25168.44298 21426.55324 30487.94149 32419.02354 0.788618667 0.68393182 0.889559208 0.892914455 0.961346282 0.798933571 0.776347966 0.660925312 0.940433676 1 14.98455302 -4.765862831 24.99998313 0.851851753 0.736275237 0.208694769 0.097634759 175.8794641 994040.1661 0.026307964 0.057921695 1.71E-05 4.765862831 -0.115576517 VEHES(ph)FEK ddPTM_HeLa_A485_30min_R1 4 VEHESFEK 8 0 K7EMC6;A0A0A0MSA9;A0A0C4DG49;P15151-3;P15151-2;P15151-4;P15151 K7EMC6 PVR Poliovirus receptor 1 0 VEHES(1)FEK;VEHES(1)FEK;VEHES(1)FEK;VEHES(1)FEK ;;; 96.964 0.0027618 3407400000 2418590 1711760 1332790 1464850 2522600 1199690 951540 924400 628064 805592 TRUE FALSE FALSE 2956597.001 1911935.442 1825844.483 1544871.046 2271441.087 1262503.913 748235.7056 697689.4506 754110.6839 604772.7402 4.888773592 3.16141141 3.019058832 2.554465411 3.755858913 2.087567493 1.237217976 1.153639052 1.246932333 1 19.20603359 -5.496217659 0.346320334 0.670173663 5.187079592 0.79243384 0.563736847 1.39002128 0.248609526 0.66140581 2.460679212 3.19E-06 5.496217659 4.516905929 up LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDAS(ph)R ddPTM_HeLa_A486_30min_R1 1 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDAS(1)R 57.528 0.010882 95847000 21045 26242 22548 9924.9 22239 27874 27108 22830 20895 27418 TRUE FALSE FALSE 19569.85418 24162.48835 31279.18946 23105.66878 19449.57725 24435.18928 20325.29168 17632.10738 22706.19542 20552.35434 0.95219525 1.175655497 1.521927315 1.124234645 0.946343029 1.188924095 0.988951988 0.857911803 1.104797779 1 14.32701605 -5.52301769 24.83274065 1.016688677 1.230929283 0.260993059 0.152990981 5.886585617 1051856.298 0.046324417 0.060441222 3.00E-06 5.52301769 0.214240606 LGLGTLSSS(ph)LSR ddPTM_HeLa_A485_30min_R1 2 LGLGTLSSSLSR 12 0 O95248;O95248-5;O95248-4 O95248 SBF1 Myotubularin-related protein 5 1 0 LGLGT(0.001)LS(0.004)S(0.13)S(0.862)LS(0.003)R;LGLGT(0.004)LS(0.009)S(0.242)S(0.745)LSR ; 93.772 0.0017666 144051000 334860 394530 373080 310530 401370 375630 465110 509000 323690 424270 TRUE FALSE FALSE 409348.4517 440666.8515 511097.8172 327493.4676 361408.1935 395297.406 365735.4489 384166.9519 388651.6139 318507.2971 1.285209022 1.383537695 1.604665958 1.02821339 1.134693606 1.241093719 1.148279654 1.206148039 1.220228288 1 18.2809669 -5.269328776 24.99886492 1.152757713 1.420377575 0.610055899 0.103917563 407.2346072 1290390.279 0.029248124 0.044299383 5.38E-06 5.269328776 0.267619862 LGLGTLSSS(ph)LSR ddPTM_HeLa_A486_30min_R1 2 LGLGTLSSSLSR 12 0 O95248;O95248-5;O95248-4 O95248 SBF1 Myotubularin-related protein 5 1 0 LGLGTLSS(0.086)S(0.913)LSR;LGLGTLSS(0.004)S(0.996)LSR ; 154.85 6.75E-08 112097000 426660 452360 393420 155489 532080 400580 472760 487820 391250 437760 TRUE FALSE FALSE 396753.3373 416513.3461 545762.7602 361986.25 465341.565 351160.5124 354470.4477 376754.035 425163.865 328142.0467 1.209090214 1.269308065 1.663190578 1.10313888 1.418110144 1.07014787 1.080234768 1.148143125 1.295670181 1 18.32396094 -6.266132717 24.85125166 1.125685354 1.334675066 0.322943446 0.154558547 472.9999755 2504529.69 0.053062479 0.04832435 5.42E-07 6.266132717 0.208989712 LGLLGALMAEDGVRGS(ph)PPVPSGPPMEEDGLR ddPTM_HeLa_A485_30min_R1 3 LGLLGALMAEDGVRGSPPVPSGPPMEEDGLR 31 1 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 LGLLGALMAEDGVRGS(0.999)PPVPS(0.001)GPPMEEDGLR;LGLLGALMAEDGVRGS(1)PPVPSGPPMEEDGLR;LGLLGALMAEDGVRGS(0.999)PPVPS(0.001)GPPMEEDGLR ;; 213.45 3.57E-30 710431200 138030.2 185402.4 206476.8 162497.2 232634 195736.1 224160 249620 159745.8 198272.7 TRUE FALSE FALSE 168734.5418 207083.5979 282861.1605 171374.0106 209472.1421 205984.5395 176266.3848 188400.3036 191805.3168 148846.9648 1.1336109 1.391251734 1.900348864 1.151343669 1.407298714 1.383867919 1.184212154 1.265731578 1.28860751 1 17.18347028 -8.011714545 0.400525994 0.985121464 1.436279764 0.241711655 0.202478321 2.023991426 0.860585886 0.325309618 0.171458323 9.73E-09 8.011714545 0.4511583 LGLLGALMAEDGVRGS(ph)PPVPSGPPMEEDGLR ddPTM_HeLa_A486_30min_R1 2 LGLLGALMAEDGVRGSPPVPSGPPMEEDGLR 31 1 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 LGLLGALMAEDGVRGS(1)PPVPSGPPMEEDGLR;LGLLGALMAEDGVRGS(0.993)PPVPS(0.007)GPPMEEDGLR ; 241.83 9.53E-51 662930000 217402 268530 244045 108134 353060 244178 303740 320750 235794 280530 TRUE FALSE FALSE 202163.2425 247250.7048 338545.7598 251741.4168 308775.9226 214053.801 227741.0394 247722.2269 256232.8138 210283.4621 0.961384412 1.175797195 1.609949525 1.197152712 1.468379489 1.017929793 1.08301926 1.178039512 1.218511486 1 17.68197587 -6.279696713 24.89563873 1.109597437 1.290049431 0.21577804 0.173640239 1350.372925 1841358.079 0.062833057 0.055517651 5.25E-07 6.279696713 0.180451994 LGLPLLTDCAQPS(ph)RPHGSPSR ddPTM_HeLa_A485_30min_R1 1 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 LGLPLLTDCAQPS(0.495)RPHGS(0.495)PS(0.01)R 136.56 3.03E-07 194280000 35771 50221 50842 34334 60657 41636 50934 56750 44139 45488 TRUE FALSE FALSE 43728.13554 56093.90909 69650.57151 36209.57948 54617.7761 43815.99658 40051.53481 42831.97352 52997.29243 34148.67874 1.280522033 1.642637758 2.039627127 1.060350819 1.599411108 1.28309493 1.172857524 1.254279085 1.551957334 1 15.05954214 -5.277208447 24.95582379 1.294812306 1.653099905 0.331123928 0.246124128 926.5016615 1466261.651 0.068468119 0.101932489 5.28E-06 5.277208447 0.358287599 LGLPLLTDCAQPS(ph)RPHGSPSR ddPTM_HeLa_A486_30min_R1 2 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 LGLPLLTDCAQPS(0.709)RPHGS(0.29)PS(0.002)R;LGLPLLTDCAQPS(0.595)RPHGS(0.404)PS(0.001)R ; 250.05 2.72E-47 1833100000 279602 352750 309700 69007 383140 252227 308910 326340 273130 254799 TRUE FALSE FALSE 260003.3437 324796.8053 429624.1341 160651.7834 335083.0086 221109.7972 231617.4507 252039.506 296805.1283 190995.6719 1.361304898 1.700545368 2.249391987 0.841127874 1.754401056 1.15766915 1.212684289 1.319608468 1.553988765 1 17.54318042 -5.264159311 24.9982243 1.290116755 1.763427193 0.349504609 0.315780544 277.1125474 2546880.416 0.08552094 0.133507221 5.44E-06 5.264159311 0.473310438 LGLPLLTDCAQPSRPHGS(ph)PSR ddPTM_HeLa_A485_30min_R1 3 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 LGLPLLTDCAQPS(0.009)RPHGS(0.991)PSR;LGLPLLTDCAQPS(0.001)RPHGS(0.966)PS(0.033)R;LGLPLLTDCAQPS(0.148)RPHGS(0.851)PS(0.001)R ;; 245.41 7.98E-47 3052300000 318821 452787 483851 321846 526080 381361 450816 514460 391354 429084 TRUE FALSE FALSE 389741.6315 505736.5009 662847.6196 339427.632 473701.628 401328.4723 354495.4788 388287.8784 469895.1581 322121.2555 1.209922117 1.570019029 2.05775809 1.053726279 1.470569296 1.245892549 1.10050322 1.205409056 1.458752411 1 18.29724434 -5.292947864 24.94979841 1.234455527 1.608312052 0.359893654 0.239748177 714.5515704 565811.6842 0.067453764 0.100060835 5.09E-06 5.292947864 0.373856525 LGLPLLTDCAQPSRPHGS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 LGLPLLTDCAQPS(0.103)RPHGS(0.897)PSR;LGLPLLTDCAQPS(0.318)RPHGS(0.681)PS(0.001)R ; 248.58 4.39E-47 1287410000 390830 468690 452390 107700 555960 416490 470920 449730 423030 359570 TRUE FALSE FALSE 363434.8352 431549.2975 627567.5234 250731.0429 486226.3127 365107.6984 353090.8351 347336.2965 459698.581 269531.3316 1.348395502 1.601109952 2.328365759 0.930248225 1.803969542 1.354602065 1.310017774 1.288667609 1.705547842 1 18.04009346 -5.275539592 24.98675771 1.37235071 1.743472435 0.236000296 0.340744979 1219.506349 2161064.665 0.093418527 0.139307799 5.30E-06 5.275539592 0.371121725 LGLQS(ph)LR ddPTM_HeLa_A486_30min_R1 2 LGLQSLR 7 0 P18085;C9JAK5;U3KQF2 P18085 ARF4 ADP-ribosylation factor 4 1 0 LGLQS(1)LR;LGLQS(1)LR ; 67.507 0.023244 82895000 217478 237734 164193 98209 258030 276860 286350 279600 209208 325850 TRUE FALSE FALSE 202233.9153 218895.092 227772.9268 228635.5152 225665.4714 242703.8281 214702.2013 215941.1836 227342.3179 244255.0391 0.827962101 0.896174314 0.932520892 0.936052399 0.923892798 0.993649216 0.879008278 0.884080772 0.930757944 1 17.8980288 -4.319637107 2.131415053 0.930733986 0.807350845 0.436964864 0.037047425 0.578422163 3.267983642 0.009949429 0.130333854 4.79E-05 4.319637107 -0.123383141 LGLVLQPDAGGLFLSHES(ph)PK ddPTM_HeLa_A485_30min_R1 1 LGLVLQPDAGGLFLSHESPK 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 LGLVLQPDAGGLFLSHES(1)PK 202.44 1.93E-26 75174000 105830 68387 59639 226290 79751 128300 168640 165200 74334 257980 TRUE FALSE FALSE 129371.5184 76384.26476 81701.94789 238651.6497 71810.71042 135017.5896 132608.6863 124684.441 89252.15197 193670.3338 0.667998634 0.394403538 0.421860934 1.23225713 0.370788386 0.697151634 0.68471347 0.643797316 0.460845759 1 17.56324345 -11.06159271 2.512915485 1.539226707 0.622541849 0.187296142 0.237812558 20188989.95 7528823.114 62424366.48 0.059134447 8.68E-12 11.06159271 -0.916684858 LGLVLQPDAGGLFLSHES(ph)PK ddPTM_HeLa_A486_30min_R1 2 LGLVLQPDAGGLFLSHESPK 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 LGLVLQPDAGGLFLSHES(1)PK;LGLVLQPDAGGLFLSHES(1)PK ; 191.09 1.82E-19 230940000 178811 173782 88075 154598 159849 212060 275160 265120 142810 415950 TRUE FALSE FALSE 166277.2723 160010.8814 122179.9987 359911.957 139799.2479 185898.1933 206312.0577 204757.9635 155188.8858 311793.4126 0.533293089 0.513195196 0.391862027 1.15432829 0.448371397 0.596222325 0.661694729 0.656710358 0.497729841 1 18.25023092 -11.21570245 2.324960767 2.233965983 0.611253123 0.257143823 0.200751306 11815378.94 2330047.223 76652618.58 0.049585773 6.09E-12 11.21570245 -1.62271286 LGLVS(ph)PESMDNYSHFHELR ddPTM_HeLa_A485_30min_R1 3 LGLVSPESMDNYSHFHELR 19 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 LGLVS(0.997)PES(0.003)MDNYSHFHELR;LGLVS(0.95)PES(0.05)MDNYSHFHELR;LGLVS(1)PESMDNYSHFHELR ;; 234.51 1.43E-45 324681000 117233 175125 160610 105222 213556 148294 167898 226277 170061 176612 TRUE FALSE FALSE 143311.0764 195604.3454 220026.3225 110970.0114 192293.6148 156058.4445 132025.2207 170782.211 204190.6828 132585.8787 1.080892459 1.475303006 1.659500429 0.836967047 1.450332544 1.177036695 0.99577136 1.288087484 1.540063578 1 17.0165676 -5.240533185 24.99632039 1.199000119 1.412238996 0.14949604 0.239747382 1658.485972 1982953.238 0.064359735 0.111315455 5.75E-06 5.240533185 0.213238877 LGLVS(ph)PESMDNYSHFHELR ddPTM_HeLa_A486_30min_R1 3 LGLVSPESMDNYSHFHELR 19 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 LGLVS(0.997)PES(0.003)MDNYSHFHELR;LGLVS(0.985)PES(0.015)MDNYSHFHELR;LGLVS(1)PESMDNYSHFHELR ;; 252.6 4.92E-58 353680000 179304 228171 195914 40176 250039 180557 212075 207730 168761 161599 TRUE FALSE FALSE 166735.7155 210089.899 271777.1476 93531.75838 218676.7771 158281.7131 159011.5919 160434.4137 183389.3394 121133.5586 1.376461796 1.734365782 2.243615648 0.772137461 1.805253471 1.306671041 1.312696447 1.32444234 1.5139433 1 16.88623908 -8.186279532 0.063143151 1.51E-10 2.576191968 0.176201542 0.358754105 73.4772639 2.626434025 57.83609287 46.60017645 6.51E-09 8.186279532 2.576191967 LGLVSPES(ph)MDNYSHFHELR ddPTM_HeLa_A485_30min_R1 1 LGLVSPESMDNYSHFHELR 19 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 LGLVSPES(0.999)MDNYS(0.001)HFHELR 75.184 0.0027273 41947000 56444 64682 71806 50831 90523 57041 83808 88496 61603 65706 TRUE FALSE FALSE 68999.77307 72245.99724 98370.0275 53607.76882 81510.21227 60027.57856 65901.73615 66792.21724 73966.15704 49326.70343 1.398832038 1.464642723 1.994255052 1.086790016 1.652456106 1.216938785 1.336025551 1.35407827 1.499515514 1 15.59008125 -5.282059074 24.99997375 1.333204666 1.603783338 0.273951855 0.230026342 1142.389705 1385067.058 0.062308832 0.092532975 5.22E-06 5.282059074 0.270578672 LGLVWAALQGAR ddPTM_HeLa_A486_30min_R1 1 LGLVWAALQGAR 12 0 O15230 O15230 LAMA5 Laminin subunit alpha-5 0 0 94.302 0.0082662 0 2684.3 2524.3 2865.8 1294.7 2846.7 2552.6 3190.6 2467.1 2322.4 2886.6 FALSE FALSE TRUE 2496.144432 2324.265275 3975.514509 3014.127031 2489.640342 2237.686165 2392.278133 1905.395186 2523.707502 2163.776571 1.153605444 1.074170645 1.837303611 1.392993653 1.150599546 1.034157683 1.105603122 0.88058777 1.166343852 1 11.07933582 -5.911302364 3.5576581 1.037839895 1.376655234 0.371395438 0.200452406 0.269214235 6.709521347 0.068758486 0.078556369 1.23E-06 5.911302364 0.338815338 LGMLS(ph)PEGTCK ddPTM_HeLa_A485_30min_R1 4 LGMLSPEGTCK 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LGMLS(1)PEGTCK;LGMLS(1)PEGTCK;LGMLS(0.999)PEGT(0.001)CK;LGMLS(1)PEGTCK ;;; 179.67 2.12E-10 1341150000 1813700 1746640 1292690 2346340 2285640 1975660 2817530 2497550 1589270 3314900 TRUE FALSE FALSE 2217151.308 1950894.354 1770909.824 2474514.613 2058073.656 2079102.503 2215541.698 1885021.946 1908221.911 2488556.436 0.890938729 0.783946197 0.711621323 0.994357442 0.827015062 0.835465281 0.890291924 0.757476069 0.766798729 1 21.24687767 -11.35638355 2.353852538 2.182520936 0.828644282 0.306542258 0.077313093 11129739.96 813735.3124 70842497.21 0.020585535 4.40E-12 11.35638355 -1.353876654 LGMLS(ph)PEGTCK ddPTM_HeLa_A486_30min_R1 6 LGMLSPEGTCK 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LGMLS(1)PEGTCK;LGMLS(0.999)PEGT(0.001)CK;LGMLS(1)PEGTCK;LGMLS(1)PEGTCK;LGMLS(1)PEGTCK;LGMLS(1)PEGTCK ;;;;; 168.02 4.45E-08 1344910000 3421080 3520620 1924230 1458980 3598530 3790450 4481060 4317830 2820350 4638160 TRUE FALSE FALSE 3181279.958 3241633.249 2669343.389 3396579.173 3147168.812 3322822.817 3359851.392 3334754.367 3064820.209 3476734.547 0.915019515 0.932378704 0.767773137 0.976945213 0.905208255 0.955730952 0.966381341 0.959162778 0.881522638 1 21.72930149 LGMT(ph)PIRK ddPTM_HeLa_A485_30min_R1 2 LGMTPIRK 8 1 A6NHR9;J3KTK7;A0A2R8YCU7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 1 0 LGMT(1)PIRK;LGMT(1)PIRK ; 98.048 0.0022271 671130000 456210 469700 409410 542760 681520 583080 715570 809540 489550 678800 TRUE FALSE FALSE 557692.3406 524627.3292 560867.796 572409.6045 613665.4758 613609.1672 562682.6238 610999.0457 587798.1946 509587.6524 1.094399242 1.029513425 1.100630664 1.123279973 1.204239296 1.204128798 1.104192029 1.199006771 1.153478095 1 18.9589708 -5.212540903 2.512148469 1.154872358 1.063326211 0.20032353 0.06025339 0.360777186 4.466449887 0.016713258 0.032084171 6.13E-06 5.212540903 -0.091546147 LGMT(ph)PIRK ddPTM_HeLa_A486_30min_R1 2 LGMTPIRK 8 1 A6NHR9;J3KTK7;A0A2R8YCU7 A6NHR9 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 1 0 LGMT(1)PIRK;LGMT(1)PIRK ; 125.97 0.00052277 539610000 834660 906030 528080 335630 910550 857930 1005660 1009270 687650 918490 TRUE FALSE FALSE 776154.6442 834232.8831 732566.7185 781363.6018 796340.3285 752087.3194 754033.2312 779481.2532 747256.0557 688494.1256 1.127322101 1.211677561 1.064013027 1.134887827 1.156640702 1.09236563 1.09519196 1.132153818 1.085348484 1 19.39308482 -13.99999999 0.135939343 0.571084257 1.171079463 0.539299585 0.036725701 108.5436362 0.913835097 12.56422145 0.242964829 1.00E-14 13.99999999 0.599995205 LGNDFHTNKR ddPTM_HeLa_A485_30min_R1 2 LGNDFHTNKR 10 1 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73;A0A0J9YYC4 H3BNC9 RPS17 40S ribosomal protein S17 0 0 ; ; 110.38 0.0009911 657077000 180319 195000 161353 190543 245373 247293 289040 363212 174913 263160 FALSE FALSE TRUE 220430.3395 217803.5537 221044.1892 200951.8816 220942.8026 260240.8791 227284.2428 274133.6875 210016.4347 197559.0551 1.115769355 1.10247315 1.118876526 1.017173733 1.118363329 1.317281453 1.150462289 1.387603759 1.063056485 1 17.59192445 -6.019911704 23.93854758 1.207162394 1.088735307 0.130704129 0.108872442 666.4311816 801206.4529 0.033233715 0.033715634 9.55E-07 6.019911704 -0.118427087 LGNPYCS(ph)PTLVR ddPTM_HeLa_A485_30min_R1 3 LGNPYCSPTLVR 12 0 Q6ZV89-2;Q6ZV89 Q6ZV89-2 SH2D5 SH2 domain-containing protein 5 1 0 LGNPYCS(0.873)PT(0.127)LVR;LGNPY(0.016)CS(0.562)PT(0.422)LVR;LGNPYCS(0.905)PT(0.095)LVR ;; 100.22 0.0010573 666070000 499740 627790 709030 577740 821510 609390 726450 766920 653590 772130 TRUE FALSE FALSE 610905.4389 701204.5795 971329.7022 609300.4733 739717.5799 641296.7181 571238.0229 578831.6675 784759.5179 579652.201 1.053917225 1.209698813 1.675711229 1.051148382 1.27614038 1.106347422 0.985484092 0.998584438 1.35384549 1 19.144828 -6.078856331 1.706864032 1.081331718 1.281268073 0.148714749 0.190512381 0.682018785 3.983159845 0.076772849 0.080020932 8.34E-07 6.078856331 0.199936355 LGPGRPLPTFPTS(ph)ECTSDVEPDTR ddPTM_HeLa_A486_30min_R1 1 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 LGPGRPLPTFPT(0.05)S(0.358)ECT(0.258)S(0.335)DVEPDTR 165.31 2.50E-14 2018900000 322550 446510 321000 107980 458920 363510 454600 441090 362150 330070 TRUE FALSE FALSE 299940.9106 411126.9214 445299.7967 251382.897 401357.9743 318663.8321 340854.2717 340663.4359 393541.4536 247418.3236 1.212282527 1.661667234 1.799785037 1.016023766 1.622183711 1.287955667 1.377643607 1.376872299 1.590591383 1 17.91659282 -10.91844763 2.575748877 0.728443055 1.440504325 0.25804983 0.222950605 7580956.352 4305085.863 12417062.97 0.05603176 1.21E-11 10.91844763 0.71206127 LGPGRPLPTFPTSECT(ph)SDVEPDTR ddPTM_HeLa_A485_30min_R1 1 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 LGPGRPLPTFPT(0.011)S(0.011)ECT(0.489)S(0.489)DVEPDTR 95.794 0.0021532 422280000 103410 104650 132580 118030 183130 98130 146850 152190 120860 176100 TRUE FALSE FALSE 126413.1977 116887.9072 181626.8591 124477.68 164896.9342 103267.9351 115474.2978 114865.1639 145115.4934 132201.5109 0.956215983 0.884164685 1.373863717 0.941575321 1.24731505 0.781140354 0.873471847 0.868864229 1.097684077 1 17.01237914 -6.269415037 24.99595993 0.912863608 1.078278223 0.194905793 0.158051014 1004.811047 3149099.12 0.054679171 0.049031081 5.38E-07 6.269415037 0.165414615 LGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_HeLa_A485_30min_R1 4 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 LGPGRPLPTFPTS(0.001)ECT(0.031)S(0.967)DVEPDTR;LGPGRPLPTFPTS(0.001)ECT(0.019)S(0.98)DVEPDTR;LGPGRPLPTFPT(0.001)S(0.01)ECT(0.147)S(0.842)DVEPDTR;LGPGRPLPTFPT(0.004)S(0.016)ECT(0.19)S(0.79)DVEPDTR ;;; 199.2 9.01E-29 3698760000 421759 428911 535819 578686 737757 433527 548950 573062 513740 730771 TRUE FALSE FALSE 515577.8345 479068.4104 734040.7454 610298.1509 664303.3227 456225.8034 431662.348 432517.646 616842.9057 548603.2385 0.939800931 0.873251153 1.338017521 1.112458163 1.210899382 0.831613398 0.786838862 0.788397909 1.124388014 1 19.06540361 -6.271695745 24.65749516 0.885559451 1.097056018 0.266979855 0.154372862 781.5274006 1878877.723 0.056435961 0.050342089 5.35E-07 6.271695745 0.211496567 LGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_HeLa_A486_30min_R1 3 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1;H0YHZ9;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 LGPGRPLPTFPT(0.001)S(0.004)ECT(0.044)S(0.951)DVEPDTR;LGPGRPLPTFPTS(0.001)ECT(0.209)S(0.79)DVEPDTR;LGPGRPLPTFPT(0.014)S(0.079)ECT(0.231)S(0.676)DVEPDTR ;; 149.66 1.17E-09 2828320000 848420 1452140 1190900 476578 1555180 1171510 1404690 1414790 1136440 1115680 TRUE FALSE FALSE 788950.1392 1337067.138 1652048.373 1109497.669 1360114.823 1026981.007 1053221.705 1092673.202 1234947.534 836306.4661 0.943374434 1.598776515 1.97541026 1.326663985 1.626335414 1.227996014 1.259372906 1.306546399 1.476668643 1 19.67367219 -6.270865663 24.50698948 1.27360444 1.517362921 0.163415551 0.26713325 997.6617468 2593769.012 0.094207588 0.084193799 5.36E-07 6.270865663 0.243758481 LGPLFSLLNENHR ddPTM_HeLa_A485_30min_R1 1 LGPLFSLLNENHR 13 0 F2Z3J2;Q16401-2;Q16401 F2Z3J2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 0 156.14 1.57E-06 9191900 9328 12953 12275 9260 13173 11597 13167 14735 11476 13105 FALSE FALSE TRUE 11402.98142 14467.74067 16816.03331 9765.850352 11861.44987 12204.20099 10353.76289 11121.21815 13779.12794 9838.16468 1.159055758 1.470573135 1.70926528 0.992649612 1.205656772 1.240495701 1.052407967 1.130415937 1.40057911 1 13.26417349 -5.273608445 24.99868917 1.15398299 1.448725582 0.399554901 0.168476503 750.2510008 1541225.225 0.047293116 0.070737716 5.33E-06 5.273608445 0.294742591 LGPLFSLLNENHR ddPTM_HeLa_A486_30min_R1 1 LGPLFSLLNENHR 13 0 F2Z3J2;Q16401-2;Q16401 F2Z3J2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 0 158.01 1.10E-06 11123000 19177 17439 17647 4927.6 21145 15545 19011 19202 16589 17435 FALSE FALSE TRUE 17832.79133 16057.07013 24480.391 11471.70183 18492.79693 13627.21595 14254.24672 14830.12378 18026.94788 13069.16252 1.364493808 1.22862273 1.873141525 0.877768703 1.414994795 1.042700015 1.090677899 1.134741706 1.37934989 1 13.67387907 -5.278230693 24.99903877 1.145992247 1.462739766 0.358448662 0.21606113 922.8608523 1373960.129 0.058556742 0.087101667 5.27E-06 5.278230693 0.316747519 LGPQNFIDET(ph)SDIENLLK ddPTM_HeLa_A485_30min_R1 1 LGPQNFIDETSDIENLLK 18 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LGPQNFIDET(0.5)S(0.5)DIENLLK 96.993 0.0022689 320720000 75768 86830 40235 66528 41079 69829 77250 81192 42472 81012 TRUE FALSE FALSE 92622.3302 96984.01318 55119.60082 70162.25618 36989.03052 73485.13846 60744.90643 61279.5347 50995.74082 60817.19932 1.522962768 1.594680687 0.906316 1.153658126 0.608200163 1.208295339 0.998811308 1.00760205 0.838508537 1 15.89219176 -4.759838835 24.99973643 0.969312167 1.558821939 0.694115619 0.157615446 20.701928 323325.939 0.038841853 0.092271536 1.74E-05 4.759838835 0.589509772 LGPQNFIDET(ph)SDIENLLK ddPTM_HeLa_A486_30min_R1 2 LGPQNFIDETSDIENLLK 18 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LGPQNFIDET(0.708)S(0.292)DIENLLK;LGPQNFIDET(0.5)S(0.5)DIENLLK ; 115.5 0.00033436 63982000 134606 105678 43508 40603 62691 96016 118176 92454 77803 173447 TRUE FALSE FALSE 125170.8145 97303.69041 60355.46278 94525.83596 54827.71021 84170.52214 88607.11486 71404.24246 84547.02668 130014.7422 0.962743242 0.748405056 0.464220147 0.727039367 0.421703795 0.647392139 0.681515906 0.549201123 0.650288 1 16.98831569 -8.075926173 20.45674167 1 0.640513405 0.340222804 0.145596302 7426.620092 2000949.946 0.141393483 0.03650764 8.40E-09 8.075926173 -0.359486595 LGPQNFIDET(ph)SDIENLLKEEEDYKEENNDSK ddPTM_HeLa_A485_30min_R1 1 LGPQNFIDETSDIENLLKEEEDYKEENNDSK 31 2 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LGPQNFIDET(0.5)S(0.5)DIENLLKEEEDYKEENNDSK 143.22 2.01E-09 16783000 7179.8 2538.4 0 24931 4879.7 5037.5 13531 7460.5 4383 29338 TRUE FALSE FALSE 8776.92174 2835.243799 0 26292.9174 4393.859934 5301.255711 10639.99131 5630.800677 5262.627897 22024.57653 0.398505811 0.128730911 0 1.193798999 0.199498044 0.240697282 0.483096295 0.255659884 0.238943432 1 14.42682666 -10.64989992 2.62525826 1.078160752 0.350537448 0.284603273 0.309737027 28780763.44 24992265.24 15186834.24 0.08035683 2.24E-11 10.64989992 -0.727623304 LGPQNFIDETS(ph)DIENLLK ddPTM_HeLa_A485_30min_R1 1 LGPQNFIDETSDIENLLK 18 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LGPQNFIDET(0.446)S(0.554)DIENLLK 105.39 0.00014402 36331000 86984 92860 46337 62372 46604 67338 82678 86782 39399 81189 TRUE FALSE FALSE 106333.2907 103719.1692 63478.98454 65779.22443 41963.94212 70863.71356 65013.16988 65498.57843 47306.01791 60950.07647 1.74459651 1.701706958 1.041491467 1.079231204 0.688496956 1.162651758 1.066662647 1.074626682 0.776143701 1 15.89534041 -4.767357621 4.657404151 0.986218327 1.74052414 0.823442195 0.136806168 0.067587475 3.697565307 0.035900089 0.089283192 1.71E-05 4.767357621 0.754305813 LGPQNFIDETS(ph)DIENLLK ddPTM_HeLa_A486_30min_R1 2 LGPQNFIDETSDIENLLK 18 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LGPQNFIDET(0.249)S(0.751)DIENLLK;LGPQNFIDET(0.112)S(0.888)DIENLLK ; 141.13 2.86E-07 419320000 224072 192413 76508 53345 95537 164493 162475 134614 155139 309020 TRUE FALSE FALSE 208365.7099 177165.4931 106133.9466 124189.8559 83553.85861 144199.5261 121822.0365 103965.3308 168586.5734 231639.3806 0.899526278 0.764833219 0.458186109 0.536134467 0.360706622 0.622517319 0.52591246 0.448824075 0.727797549 1 17.82152102 -8.038703399 6.157671515 0.999954136 0.571159539 0.429766336 0.149444095 0.256000737 35.54703493 0.152847797 0.039652425 9.15E-09 8.038703399 -0.428794597 LGPQNFIDETS(ph)DIENLLKEEEDYKEENNDSK ddPTM_HeLa_A485_30min_R1 1 LGPQNFIDETSDIENLLKEEEDYKEENNDSK 31 2 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LGPQNFIDET(0.162)S(0.838)DIENLLKEEEDYKEENNDSK 208.55 1.13E-29 89204000 83324 25437 16312 234820 53486 50027 117870 74022 40445 325930 TRUE FALSE FALSE 101859.1363 28411.63588 22346.4876 247647.622 48160.74604 52646.33636 92686.11159 55867.98844 48561.94052 244681.6493 0.416292503 0.116116742 0.091328825 1.012121762 0.196830233 0.215162586 0.378802872 0.228329295 0.198469892 1 17.90054638 -10.42980904 4.739843831 1.001353352 0.317619307 0.398020887 0.251968415 0.003633649 0.000437118 0.246009672 0.059561181 3.72E-11 10.42980904 -0.683734044 LGS(ph)ALLIR ddPTM_HeLa_A485_30min_R1 3 LGSALLIR 8 0 Q14993 Q14993 COL19A1 Collagen alpha-1(XIX) chain 1 0 LGS(1)ALLIR;LGS(1)ALLIR;LGS(1)ALLIR ;; 144.09 0.00035703 639332000 595730 611140 549190 784980 792420 608020 826740 739850 579650 1001800 TRUE FALSE FALSE 728248.0833 682607.5068 752358.2347 827861.4697 713523.8824 639854.987 650100.2452 558400.6275 695980.4381 752069.6968 0.968325258 0.907638627 1.000383659 1.100777592 0.948747018 0.85079214 0.864414891 0.742485211 0.925420132 1 19.52050684 -6.135429627 4.30214655 0.86013365 0.99202653 0.33709881 0.075981245 0.244213162 7.415892489 0.025862913 0.025983355 7.32E-07 6.135429627 0.13189288 LGS(ph)ALLIR ddPTM_HeLa_A486_30min_R1 3 LGSALLIR 8 0 Q14993 Q14993 COL19A1 Collagen alpha-1(XIX) chain 1 0 LGS(1)ALLIR;LGS(1)ALLIR;LGS(1)ALLIR ;; 133.23 0.000513 614684000 717370 861480 634820 312421 913890 841900 942050 911000 708520 867060 TRUE FALSE FALSE 667086.0675 793213.1873 880639.3051 727331.8769 799261.3945 738034.9378 706339.126 703585.187 769935.0841 649942.5324 1.026377001 1.220435881 1.354949494 1.119071057 1.229741638 1.135538761 1.086771662 1.082534458 1.184620248 1 19.30995264 -6.483590344 4.084825304 1.096293727 1.196770557 0.221133586 0.088983368 0.356594454 12.88134253 0.033725563 0.028103693 3.28E-07 6.483590344 0.10047683 LGS(ph)FGK ddPTM_HeLa_A485_30min_R1 5 LGSFGK 6 0 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 LGS(1)FGK;LGS(1)FGK;LGS(1)FGK;LGS(1)FGK;LGS(1)FGK ;;;; 103.83 0.0090374 1822700000 4615920 3054520 2047260 7980380 4767740 3947790 7048880 5792950 3190290 10400330 TRUE FALSE FALSE 5642715.479 3411719.543 2804626.668 8416327.952 4293047.065 4154490.18 5542829.204 4372219.93 3830551.94 7807719.135 0.722709844 0.436967504 0.359212034 1.07794963 0.549846503 0.532100362 0.709916572 0.559986835 0.490610878 1 22.89646973 -10.21368934 4.313407091 1.000159458 0.604231763 0.280887603 0.18990918 54027935.28 63966350.52 67581.6894 0.045915172 6.11E-11 10.21368934 -0.395927696 LGS(ph)FGK ddPTM_HeLa_A486_30min_R1 4 LGSFGK 6 0 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 LGS(1)FGK;LGS(1)FGK;LGS(1)FGK;LGS(1)FGK ;;; 103.83 0.010714 2464580000 5587200 5377300 2270760 3936270 4855070 7063200 9799500 8763500 4113890 11687900 TRUE FALSE FALSE 5195566.132 4951183.164 3150059.085 9163835.488 4246101.849 6191814.197 7347561.451 6768242.356 4470485.298 8761173.765 0.593021697 0.565127835 0.35954761 1.045959792 0.484649884 0.706733409 0.838650351 0.772526894 0.510261001 1 23.06269273 -14 0.066895427 2.070380264 0.246289917 0.242698135 0.186767671 493.4373434 2.382836643 84.94169086 11.55693928 1.00E-14 14 -1.824090347 LGS(ph)FGSITR ddPTM_HeLa_A485_30min_R1 8 LGSFGSITR 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LGS(0.983)FGS(0.017)ITR;LGS(1)FGSITR;LGS(1)FGSITR;LGS(0.999)FGS(0.001)ITR;LGS(0.921)FGS(0.078)ITR;LGS(0.999)FGS(0.001)ITR;LGS(0.943)FGS(0.057)ITR;LGS(0.921)FGS(0.079)ITR ;;;;;;; 185.99 2.47E-08 56121550000 8635027 7183935 6452370 11766730 11329870 8864252 13627570 12966880 8077146 16504900 TRUE FALSE FALSE 10555858.97 8024033.706 8839370.169 12409516.66 10201828.36 9328370.528 10715928.34 9786732.349 9698155.114 12390532.18 0.851929426 0.647593952 0.713397136 1.001532177 0.823356754 0.752862782 0.86484811 0.78985569 0.782706907 1 23.56273482 -14 0.303752023 2.666744862 0.792638729 0.295371623 0.090491054 381.4085758 3.510702973 405.7846505 0.094029588 1.00E-14 14 -1.874106134 LGS(ph)FGSITR ddPTM_HeLa_A486_30min_R1 11 LGSFGSITR 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LGS(1)FGSITR;LGS(1)FGSITR;LGS(0.954)FGS(0.045)ITR;LGS(1)FGSITR;LGS(1)FGSITR;LGS(0.999)FGS(0.001)ITR;LGS(0.996)FGS(0.004)ITR;LGS(0.888)FGS(0.112)ITR;LGS(0.99)FGS(0.01)ITR;LGS(0.549)FGS(0.451)ITR;LGS(0.846)FGS(0.154)ITR ;;;;;;;;;; 198.45 1.02E-09 57859579000 12082836 11623338 7087423 6892512 11813011 12675258 16834360 15377180 9279711 16883490 TRUE FALSE FALSE 11235891.59 10702262.37 9831862.993 16046116.26 10331313.01 11111513.54 12622225.07 11876131.8 10084083.82 12655754.21 0.887808929 0.84564398 0.77686899 1.267890953 0.816333253 0.877981142 0.99735068 0.938397791 0.79679833 1 23.59329015 LGS(ph)LSAR ddPTM_HeLa_A485_30min_R1 6 LGSLSAR 7 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4;Q00G26 H0Y2V6 CEP170;PLIN5 Centrosomal protein of 170 kDa;Perilipin-5 1 0 LGS(0.996)LS(0.004)AR;LGS(0.998)LS(0.002)AR;LGS(0.97)LS(0.03)AR;LGS(0.997)LS(0.003)AR;LGS(0.992)LS(0.008)AR;LGS(0.986)LS(0.014)AR ;;;;; 144.12 0.00037385 2028800000 1766700 1751560 1310606 2033700 1862730 1718370 2330970 1932790 1255248 2440630 TRUE FALSE FALSE 2159696.32 1956389.705 1795453.698 2144795.881 1677270.061 1808341.196 1832939.217 1458770.222 1507164.76 1832225.857 1.178728218 1.067766672 0.979930335 1.170595793 0.915427568 0.986964128 1.000389341 0.796173799 0.822586775 1 20.80516592 -6.195363017 0.777742939 0.873243645 1.103372234 0.473500179 0.087591371 0.573119929 0.762125933 0.058974186 0.061185097 6.38E-07 6.195363017 0.230128588 LGS(ph)LSAR ddPTM_HeLa_A486_30min_R1 4 LGSLSAR 7 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4;Q00G26 H0Y2V6 CEP170;PLIN5 Centrosomal protein of 170 kDa;Perilipin-5 1 0 LGS(0.985)LS(0.015)AR;LGS(0.982)LS(0.018)AR;LGS(0.985)LS(0.015)AR;LGS(0.99)LS(0.01)AR ;;; 146.03 0.0011981 2667030000 1935650 1710440 1065090 771790 1757370 1981540 2443890 2282660 1411340 2741580 TRUE FALSE FALSE 1799970.931 1574898.505 1477521.372 1796766.124 1536944.268 1737077.742 1832402.873 1762948.148 1533676.088 2055070.523 0.875868205 0.766347669 0.718963829 0.874308742 0.747879088 0.845264297 0.891649631 0.857852871 0.746288787 1 20.97075647 -6.483728601 11.5511698 0.863012085 0.795124065 0.191040064 0.074085859 2.132901022 627.0583779 0.02534595 0.022224276 3.28E-07 6.483728601 -0.06788802 LGS(ph)LVDEFK ddPTM_HeLa_A485_30min_R1 2 LGSLVDEFK 9 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 LGS(1)LVDEFK;LGS(1)LVDEFK ; 166.29 9.32E-06 116542000 196222 133019 89062 419760 183906 181551 333620 235040 113862 569430 TRUE FALSE FALSE 239870.9069 148574.4149 122009.74 442690.4259 165595.6729 191056.7296 262339.3616 177396.0715 136713.059 427481.5806 0.561125714 0.347557466 0.285415198 1.035577779 0.38737499 0.446935583 0.613685767 0.414979451 0.319810409 1 18.70550273 -9.964989376 4.3187305 1.000016248 0.493203333 0.353662292 0.206691209 298387782.6 709184731.4 79975.59906 0.05038727 1.08E-10 9.964989376 -0.506812916 LGS(ph)LVDEFK ddPTM_HeLa_A486_30min_R1 2 LGSLVDEFK 9 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 LGS(1)LVDEFK;LGS(1)LVDEFK ; 168.3 7.78E-06 115613000 315770 250760 101138 286260 201944 360990 470280 422740 206120 706250 TRUE FALSE FALSE 293636.1536 230888.8643 140301.3422 666427.7468 176614.3005 316454.7241 352610.9699 326491.3303 223986.6476 529400.4031 0.554657971 0.43613277 0.265019334 1.258834982 0.333611949 0.597760641 0.666057237 0.616719082 0.42309497 1 19.01399977 -11.17897455 2.36803075 2.121658701 0.577347141 0.195664165 0.259897589 16986740.76 2926530.966 102582524.5 0.063850349 6.62E-12 11.17897455 -1.54431156 LGS(ph)PDYGNSALLSLPGYRPTTR ddPTM_HeLa_A485_30min_R1 2 LGSPDYGNSALLSLPGYRPTTR 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LGS(0.998)PDYGNS(0.002)ALLSLPGYRPTTR;LGS(0.987)PDYGNS(0.013)ALLSLPGYRPTTR ; 210.58 1.38E-27 3087600000 680640 684770 584770 1132180 1023840 751590 1028890 1087810 557710 1534240 TRUE FALSE FALSE 832046.0198 764847.8948 801100.7573 1194028.127 921902.8947 790942.0902 809059.2462 821022.8919 669637.2814 1151782.204 0.722398746 0.66405601 0.69553146 1.036678743 0.800414255 0.686711505 0.702441177 0.712828249 0.58139228 1 20.13543651 -6.253054896 23.80773261 0.716586818 0.78630577 0.01813694 0.137790464 1142.463849 3244024.467 0.046646033 0.045860546 5.58E-07 6.253054896 0.069718953 LGS(ph)PDYGNSALLSLPGYRPTTR ddPTM_HeLa_A486_30min_R1 4 LGSPDYGNSALLSLPGYRPTTR 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LGS(0.998)PDYGNS(0.002)ALLSLPGYRPTTR;LGS(0.999)PDYGNS(0.001)ALLSLPGYRPTTR;LGS(0.994)PDYGNS(0.006)ALLSLPGYRPTTR;LGS(1)PDYGNSALLSLPGYRPTTR ;;; 170.68 2.28E-14 4454879000 454353 452854 238793 256527 466374 454984 609356 546843 304686 669726 TRUE FALSE FALSE 422505.201 416968.1998 331260.0447 597207.8202 407877.0242 398852.7 456888.6837 422338.7864 331096.4278 502022.2504 0.841606524 0.83057713 0.65985132 1.189604285 0.812468021 0.794492076 0.910096481 0.841275035 0.659525405 1 18.93739178 -9.511265988 14.03997797 0.999999448 0.842848623 0.107271262 0.13974016 0 0 0.133052846 0.032270055 3.08E-10 9.511265988 -0.157150826 LGS(ph)PGAPQQEDAMDDKELIEYFK ddPTM_HeLa_A485_30min_R1 2 LGSPGAPQQEDAMDDKELIEYFK 23 1 H0YGG4 H0YGG4 EIF2B1 1 0 LGS(1)PGAPQQEDAMDDKELIEYFK;LGS(1)PGAPQQEDAMDDKELIEYFK ; 206.95 2.74E-29 510730000 366680 244591 168908 702180 407520 337030 592360 504870 249340 949840 TRUE FALSE FALSE 448246.701 273193.7898 231394.098 740538.3154 366945.8779 354676.3697 465797.4469 381049.8409 299380.2509 713062.3685 0.628622012 0.383127482 0.324507516 1.038532319 0.514605586 0.497398805 0.653235211 0.53438501 0.419851424 1 19.44366874 -10.58675805 3.099986609 1.023204717 0.556723177 0.334150223 0.1884701 128838915.7 146727115.2 24579577.5 0.046565831 2.59E-11 10.58675805 -0.46648154 LGS(ph)PGAPQQEDAMDDKELIEYFK ddPTM_HeLa_A486_30min_R1 5 LGSPGAPQQEDAMDDKELIEYFK 23 1 H0YGG4 H0YGG4 EIF2B1 1 0 LGS(1)PGAPQQEDAMDDKELIEYFK;LGS(1)PGAPQQEDAMDDKELIEYFK;LGS(1)PGAPQQEDAMDDKELIEYFK;LGS(1)PGAPQQEDAMDDKELIEYFK;LGS(1)PGAPQQEDAMDDKELIEYFK ;;;; 304.05 6.49E-90 1091690000 753997 670465 237365 678131 610542 1045413 1512273 1257185 553422 1864192 TRUE FALSE FALSE 701145.7039 617334.9116 329279.0849 1578723.239 533962.1293 916440.573 1133886.3 970951.4197 601393.0646 1397386.189 0.501755141 0.441778312 0.235639287 1.129768743 0.382114932 0.655824839 0.811433739 0.694833989 0.430369979 1 20.41429936 -14 0.058672347 2.345510971 2.87E-13 0.219831381 0.239156903 668.3495522 2.863345221 133.8376584 23.14776286 1.00E-14 14 -2.345510971 LGS(ph)PHRRPLSVDK ddPTM_HeLa_A485_30min_R1 1 LGSPHRRPLSVDK 13 2 M0QXN6;M0QX46;Q6UUV9-3;Q6UUV9;Q6UUV9-2 M0QXN6 CRTC1 CREB-regulated transcription coactivator 1 1 0 LGS(1)PHRRPLSVDK 91.932 0.00065476 858700000 154110 146500 127960 222600 195750 193710 253260 245110 134820 326280 TRUE FALSE FALSE 188391.2378 163631.9006 175297.7289 234760.0743 176260.4427 203852.3561 199148.9321 184996.3882 161877.1374 244944.4007 0.769118368 0.66803691 0.715663344 0.958421885 0.71959368 0.832239298 0.813037291 0.755258694 0.660872985 1 17.90209479 -11.21625425 2.466514195 1.789642892 0.768793484 0.416061405 0.083166862 5875620.008 1452145.079 25940799.64 0.0217269 6.08E-12 11.21625425 -1.020849408 LGS(ph)PHRRPLSVDK ddPTM_HeLa_A486_30min_R1 3 LGSPHRRPLSVDK 13 2 M0QXN6;M0QX46;Q6UUV9-3;Q6UUV9;Q6UUV9-2 M0QXN6 CRTC1 CREB-regulated transcription coactivator 1 1 0 LGS(1)PHRRPLSVDK;LGS(1)PHRRPLSVDK;LGS(1)PHRRPLSVDK ;; 139.08 2.02E-06 4075360000 1213968 1361600 608499 748458 1274320 1304203 1889870 1618570 967020 2086640 TRUE FALSE FALSE 1128875.112 1253701.857 844126.109 1742448.049 1114482.903 1143303.694 1417004.537 1250056.944 1050842.072 1564131.762 0.721726353 0.801532126 0.53967711 1.114003367 0.712524948 0.730951012 0.905936809 0.799201816 0.671837308 1 20.57693062 -11.42893744 2.185962747 2.886702388 0.782235289 0.175629859 0.144293276 9729065.704 1018103.937 90569940.63 0.036429559 3.72E-12 11.42893744 -2.104467098 LGS(ph)PKPER ddPTM_HeLa_A485_30min_R1 6 LGSPKPER 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER ;;;;; 113.63 0.00051586 25246550000 13165470 10607650 7460100 27580600 14552760 12754020 22392700 19503700 9271210 33643100 TRUE FALSE FALSE 16094083.38 11848122.39 10219901.43 29087258.34 13103836.12 13421800.77 17608316.71 14720386.99 11131856.81 25256494.33 0.637225546 0.469111914 0.404644497 1.151674416 0.518830363 0.531419784 0.697179762 0.582835718 0.440752254 1 24.59015107 -10.97272259 2.569597464 1.333937277 0.607550565 0.25735664 0.201846618 23359080.05 11286819.85 46388577.54 0.05116785 1.06E-11 10.97272259 -0.726386712 LGS(ph)PKPER ddPTM_HeLa_A486_30min_R1 6 LGSPKPER 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER;LGS(1)PKPER ;;;;; 109.6 0.00060435 20914940000 14758920 14141820 6057540 14405070 11324310 18509360 27045600 23072100 10302160 34902900 TRUE FALSE FALSE 13724395.92 13021170.68 8403181.715 33535730.95 9903909.445 16225863.35 20278504.82 17819086.49 11195159.52 26162986.66 0.524572982 0.497694352 0.321185873 1.28180056 0.378546592 0.62018391 0.775083712 0.681079982 0.42790067 1 24.64102391 -11.54869624 2.216682335 7.254471333 0.619991799 0.166716372 0.259676216 21425523.06 1163132.898 675313841.6 0.065861974 2.83E-12 11.54869624 -6.634479534 LGS(ph)PLAVDEALR ddPTM_HeLa_A485_30min_R1 4 LGSPLAVDEALR 12 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 LGS(1)PLAVDEALR;LGS(1)PLAVDEALR;LGS(1)PLAVDEALR;LGS(1)PLAVDEALR ;;; 223.55 4.35E-23 206443000 335884 305211 246640 536520 418995 284390 420598 363953 267019 676270 TRUE FALSE FALSE 410600.237 340902.7715 337882.3995 565828.7291 377278.3866 299280.2206 330733.8013 274692.9561 320607.2641 507688.3348 0.808764371 0.67148041 0.665531147 1.114519854 0.74312991 0.589495957 0.651450464 0.541066117 0.631504098 1 18.95358359 -6.004809407 24.9998875 0.653649559 0.810971767 0.113742557 0.164317293 390.5087738 2029926.574 0.051413144 0.056788366 9.89E-07 6.004809407 0.157322208 LGS(ph)PLAVDEALR ddPTM_HeLa_A486_30min_R1 4 LGSPLAVDEALR 12 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 LGS(1)PLAVDEALR;LGS(1)PLAVDEALR;LGS(1)PLAVDEALR;LGS(1)PLAVDEALR ;;; 212.83 8.49E-18 237458000 323795 349056 197923 206930 318074 365624 465117 434207 268876 512287 TRUE FALSE FALSE 301098.6426 321395.5313 274564.0862 481743.4977 278178.193 320517.0283 348739.8071 335347.5448 292182.3882 384007.0008 0.784096753 0.836952271 0.714997606 1.254517487 0.724409171 0.834664544 0.908160024 0.873284977 0.760877764 1 18.55077309 LGS(ph)PLAVDEALRR ddPTM_HeLa_A485_30min_R1 4 LGSPLAVDEALRR 13 1 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR ;;; 187.75 1.50E-17 765070000 562690 546442 391906 766840 692010 466688 753360 642810 398689 952360 TRUE FALSE FALSE 687858.4492 610343.6385 536888.338 808730.5275 623111.0546 491123.062 592398.4816 485159.8396 478702.2253 714954.1789 0.962101446 0.853682175 0.750940905 1.131164138 0.871539845 0.686929424 0.828582445 0.678588718 0.669556511 1 19.44749126 -6.01567839 24.10041047 0.75870062 0.918812037 0.239207135 0.127284939 608.9981452 936136.603 0.040696856 0.041962475 9.65E-07 6.01567839 0.160111417 LGS(ph)PLAVDEALRR ddPTM_HeLa_A486_30min_R1 2 LGSPLAVDEALRR 13 1 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR ; 180.56 2.68E-17 514690000 439190 440550 240790 268210 405390 435880 582220 528420 317340 635070 TRUE FALSE FALSE 408405.049 405639.2135 334030.3366 624406.4346 354542.2061 382105.5573 436542.3979 408110.3013 344847.2867 476044.3384 0.857913888 0.85210385 0.701679045 1.311656046 0.744767194 0.802668001 0.917020459 0.857294727 0.724401613 1 18.86073643 LGS(ph)PSGK ddPTM_HeLa_A485_30min_R1 6 LGSPSGK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LGS(0.785)PS(0.215)GK;LGS(0.977)PS(0.023)GK;LGS(0.988)PS(0.012)GK;LGS(0.985)PS(0.015)GK;LGS(0.984)PS(0.016)GK;LGS(0.979)PS(0.021)GK ;;;;; 148.62 0.0010275 10656410000 16481400 8020230 2319890 33484900 4018590 16424400 11305800 15491600 9248660 34911100 TRUE FALSE FALSE 20147630.57 8958126.132 3178113.85 35314095.3 3618485.069 17284356.19 8890223.47 11692260.81 11104781.23 26208405.26 0.76874691 0.341803557 0.121263153 1.34743396 0.138065824 0.659496677 0.339212683 0.446126374 0.423710681 1 24.64352623 -10.32497763 4.339941634 1.000582825 0.504440638 0.158372795 0.339007727 0.001820348 0.000283131 0.312547855 0.075717569 4.73E-11 10.32497763 -0.496142187 LGS(ph)PSGK ddPTM_HeLa_A486_30min_R1 5 LGSPSGK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LGS(0.918)PS(0.082)GK;LGS(0.986)PS(0.014)GK;LGS(0.998)PS(0.002)GK;LGS(0.986)PS(0.014)GK;LGS(0.982)PS(0.018)GK ;;;; 159.1 0.0003371 4701500000 13094300 5410870 6958940 7708840 4059060 33590000 10203670 10479960 20807300 30541100 TRUE FALSE FALSE 12176457.19 4982092.955 9653627.935 17946569.1 3549934.846 29446007.32 7650603.843 8093901.884 22610893.52 22893409.77 0.531876086 0.217621272 0.421677157 0.783918572 0.155063614 1.286222001 0.334183676 0.353547242 0.987659494 1 24.44842902 -8.841199589 0.099035479 1.594339597 7.87E-12 0.212109307 0.323287072 49.64208673 1.744892938 17.71482831 9.555681403 1.44E-09 8.841199589 -1.594339597 LGS(ph)PVDNLEDMDRDDLTDDSVFTR ddPTM_HeLa_A485_30min_R1 4 LGSPVDNLEDMDRDDLTDDSVFTR 24 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR ;;; 246.31 1.75E-49 691705000 77529 77596.3 69615.6 120190 111783 82064 127685 105149 66405.2 148959 TRUE FALSE FALSE 94775.05858 86670.51229 95369.30739 126755.6754 100653.492 86360.74414 100404.0567 79361.04288 79732.11454 111826.2627 0.847520576 0.775046131 0.852834612 1.133505425 0.900088133 0.772276047 0.897857572 0.709681617 0.712999904 1 16.77089952 -6.244381292 20.42740762 0.805374068 0.90490962 0.104627673 0.118476618 164.682725 197208.6179 0.041021851 0.040822293 5.70E-07 6.244381292 0.099535551 LGS(ph)PVDNLEDMDRDDLTDDSVFTR ddPTM_HeLa_A486_30min_R1 4 LGSPVDNLEDMDRDDLTDDSVFTR 24 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR ;;; 210.68 2.64E-29 824618000 102185.9 100656 60645.2 58888.8 94157 111443 142111 123276 90151.2 147730 TRUE FALSE FALSE 95023.1961 92679.65198 84128.64557 137096.1025 82346.95108 97694.29573 106553.3247 95208.7459 97965.5786 110737.4464 0.858094521 0.836931453 0.75971271 1.23802839 0.743623352 0.882215537 0.962215837 0.859770104 0.884665321 1 16.75678363 -10.70026709 0.013015194 1.924677039 4.78E-06 0.053501063 0.130564932 14826.23835 29.17337566 2375.92756 1953.037093 1.99E-11 10.70026709 -1.924672254 LGS(ph)QHSPGR ddPTM_HeLa_A486_30min_R1 1 LGSQHSPGR 9 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 LGS(1)QHSPGR 91.961 0.002371 66156000 49798 47988 27144 22555 36104 55970 77240 86567 33164 65055 TRUE FALSE FALSE 46307.41736 44185.25611 37654.88374 52509.17987 31575.49966 49064.99046 57913.73504 66857.58384 36038.68222 48764.80456 0.949607361 0.906089064 0.772173375 1.07678438 0.64750592 1.00615579 1.187613394 1.371021261 0.739030589 1 15.57355265 -6.517438816 24.33329663 1.104127633 0.873259439 0.214689452 0.182168255 233.5276269 1044604.005 0.065544564 0.052393344 3.04E-07 6.517438816 -0.230868194 LGS(ph)SSNLQFK ddPTM_HeLa_A485_30min_R1 1 LGSSSNLQFK 10 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 LGS(0.816)S(0.165)S(0.018)NLQFK 157.22 1.50E-06 291930000 397230 285540 190850 578710 392540 357870 549240 502380 256210 708990 TRUE FALSE FALSE 485592.4431 318931.4191 261453.3569 610323.4619 353457.3393 376607.5198 431890.3871 379170.5173 307628.9969 532251.841 0.912335864 0.599211491 0.491221142 1.14668173 0.66407913 0.707573917 0.811439912 0.712389302 0.577976389 1 19.02174951 -11.33974326 2.17437265 2.450653236 0.735333043 0.165927347 0.177647108 9672120.792 1123330.266 69004327.28 0.044249014 4.57E-12 11.33974326 -1.715320193 LGS(ph)SSNLQFK ddPTM_HeLa_A486_30min_R1 2 LGSSSNLQFK 10 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 LGS(0.388)S(0.388)S(0.224)NLQFK;LGS(0.457)S(0.457)S(0.085)NLQFK ; 176.87 5.42E-08 678790000 995570 999160 477840 641170 845930 1072320 1480230 1266120 705810 1574740 TRUE FALSE FALSE 925785.6841 919982.9227 662872.445 1492676.163 739825.5714 940028.061 1109860.798 977852.1152 766990.1791 1180414.854 0.784288406 0.77937254 0.561558881 1.264535225 0.626750476 0.796353975 0.94022944 0.828396993 0.649763239 1 20.17086255 -11.54935905 2.057770395 3.585311546 0.808557222 0.090614911 0.186148923 10104834.05 458008.9798 122404752.7 0.045917592 2.82E-12 11.54935905 -2.776754325 LGS(ph)VDSFER ddPTM_HeLa_A485_30min_R1 4 LGSVDSFER 9 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 LGS(0.997)VDS(0.003)FER;LGS(1)VDSFER;LGS(0.991)VDS(0.009)FER;LGS(1)VDSFER ;;; 224.13 3.52E-12 1760650000 2144830 1716470 1438240 3337220 2348330 1760400 2836460 2170050 1408310 3892550 TRUE FALSE FALSE 2621940.034 1917196.235 1970304.826 3519523.878 2114522.02 1852571.822 2230427.149 1637841.835 1690944.899 2922208.922 0.89724592 0.656077743 0.674251869 1.204405288 0.723603985 0.633962824 0.763267517 0.560480745 0.578652979 1 21.4786279 -5.980752933 24.99447992 0.682800269 0.847142536 0.129413446 0.182161584 469.9910463 610333.2636 0.056740001 0.064328405 1.05E-06 5.980752933 0.164342267 LGS(ph)VDSFER ddPTM_HeLa_A486_30min_R1 4 LGSVDSFER 9 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 LGS(0.999)VDS(0.001)FER;LGS(0.999)VDS(0.001)FER;LGS(0.999)VDS(0.001)FER;LGS(1)VDSFER ;;; 199.59 9.56E-10 1656500000 2331910 2379910 1233590 1258120 1978860 2420400 2981000 2861710 1820080 4036180 TRUE FALSE FALSE 2168455.151 2191317.264 1711269.085 2928966.942 1730652.927 2121795.657 2235122.27 2210161.104 1977846 3025494.257 0.716727571 0.72428406 0.565616372 0.968095357 0.572023207 0.701305465 0.738762688 0.730512411 0.653726576 1 21.52873942 -10.27956665 4.521264539 1.000160799 0.709228255 0.408409191 0.105457668 0.000160663 2.56E-05 0.095974625 0.023264467 5.25E-11 10.27956665 -0.290932543 LGSFGS(ph)ITR ddPTM_HeLa_A486_30min_R1 2 LGSFGSITR 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LGS(0.002)FGS(0.991)IT(0.006)R;LGS(0.001)FGS(0.999)ITR ; 99.343 0.0020385 150323000 125834 135159 116125 53537 169115 121464 143530 164021 122204 155274 TRUE FALSE FALSE 117013.6864 124448.5086 161091.7099 124636.8416 147903.0198 106479.0066 107617.2759 126676.9989 132796.7411 116392.3797 1.005338036 1.06921526 1.384040006 1.070833347 1.270727689 0.914827989 0.924607574 1.088361619 1.140940166 1 16.82863708 -6.263633284 24.99839169 1.013698831 1.162475089 0.273168407 0.119273868 287.7866508 3279159.717 0.042441705 0.039269915 5.45E-07 6.263633284 0.148776258 LGSIFGLGLAYAGSNR ddPTM_HeLa_A485_30min_R1 2 LGSIFGLGLAYAGSNR 16 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ; ; 236.28 2.95E-32 33998000 21166.7 21261.6 22157.7 24738.4 23332.9 13917.3 19933.6 15215.7 15799.1 30619 FALSE FALSE TRUE 25875.15939 23747.95917 30354.75529 26089.79615 21009.79455 14645.98831 15674.62352 11484.02572 18969.83445 22986.2468 1.125680048 1.033137744 1.320561619 1.135017664 0.914015878 0.637163102 0.681913131 0.499604212 0.825268893 1 14.4884833 -5.959872604 2.827963391 0.695908207 1.158545656 0.667214269 0.140186138 0.146128693 2.38049079 0.04633465 0.051672321 1.10E-06 5.959872604 0.462637449 LGSIFGLGLAYAGSNR ddPTM_HeLa_A486_30min_R1 2 LGSIFGLGLAYAGSNR 16 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ; ; 255.54 3.91E-42 37180000 32062 37400 34231 9790.7 34163 35429 42314 32790 38684 34060 FALSE FALSE TRUE 29814.61937 34436.28779 47486.15994 22793.24439 29877.95798 31058.1302 31726.58965 25324.4328 42037.16027 25531.15431 1.167774046 1.348794785 1.859930004 0.892762001 1.170254882 1.216479671 1.24266178 0.991903166 1.646504493 1 14.63997115 -5.279773877 24.99997954 1.170958253 1.447829227 0.22198162 0.251018893 1251.661053 1706697.722 0.069226638 0.102890408 5.25E-06 5.279773877 0.276870974 LGSLVDEFK ddPTM_HeLa_A486_30min_R1 1 LGSLVDEFK 9 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 96.331 0.0072718 0 58270 58257 33430 148970 60351 57480 60701 63353 39660 75867 FALSE FALSE TRUE 54185.57391 53640.50315 46374.99129 346809.6885 52781.21483 50388.70201 45512.96777 48928.90489 43097.76073 56869.40939 0.952807045 0.943222441 0.815464619 6.098352212 0.92811259 0.886042295 0.800306672 0.860373009 0.757837319 1 15.7953652 -5.950518999 24.99999482 0.854870142 2.200914996 0.173271635 1.424201918 211.5895886 106903.3414 0.462096238 0.523967836 1.12E-06 5.950518999 1.346044854 LGSPDTVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LGSPDTVSPR 10 0 H0Y9Y2 H0Y9Y2 BOD1L1 1 0 LGSPDT(0.006)VS(0.994)PR;LGSPDT(0.002)VS(0.998)PR ; 96.067 0.0010214 221780000 373450 456840 442000 391510 556390 437140 512820 566340 414560 503420 TRUE FALSE FALSE 456522.6641 510263.464 605514.1932 412897.1999 500993.858 460027.9745 403251.8176 427444.227 497758.3894 377926.6588 1.207966291 1.350165309 1.602200266 1.092532613 1.325637783 1.217241398 1.067010777 1.13102428 1.317076681 1 18.52774676 -5.93328134 1.15420177 1.144208759 1.359524706 0.274812026 0.142113603 0.651461912 1.838139006 0.064255204 0.079265639 1.17E-06 5.93328134 0.215315946 LGSPDTVS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LGSPDTVSPR 10 0 H0Y9Y2 H0Y9Y2 BOD1L1 1 0 LGSPDTVS(1)PR 127.78 0.00017244 0 251470 277710 262070 67636 295790 229890 273570 252760 234540 260830 TRUE FALSE FALSE 233843.2516 255703.2482 363550.5225 157460.0261 258689.2601 201528.5092 205119.8925 195212.0657 254870.116 195516.4703 1.196028402 1.307834822 1.859436813 0.80535428 1.323107254 1.030749526 1.049118226 0.998443075 1.303573636 1 17.57693062 -5.276250557 24.99925005 1.080519019 1.439773546 0.401586586 0.213058158 805.3158671 1359261.556 0.058556691 0.087268931 5.29E-06 5.276250557 0.359254527 LGSQHS(ph)PGR ddPTM_HeLa_A485_30min_R1 10 LGSQHSPGR 9 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR ;;;;;;;;; 162.49 8.93E-06 19652290000 3790033 6261382 5630118 2614812 6473594 4841620 6138560 6677700 5221716 5141058 TRUE FALSE FALSE 4633112.765 6993596.158 7712932.937 2757652.559 5829060.251 5095119.737 4827006.509 5039983.605 6269666.505 3859486.855 1.200447868 1.812053369 1.998434825 0.714512748 1.510320017 1.320154707 1.250686086 1.305868836 1.624481891 1 21.87997761 -5.237551599 24.9992363 1.273545836 1.684486089 0.287702564 0.303221656 1040.97755 1089410.992 0.080302236 0.138989082 5.79E-06 5.237551599 0.410940253 LGSQHS(ph)PGR ddPTM_HeLa_A486_30min_R1 12 LGSQHSPGR 9 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGS(0.003)QHS(0.997)PGR;LGSQHS(1)PGR;LGS(0.001)QHS(0.999)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR;LGSQHS(1)PGR ;;;;;;;;;;; 155.48 2.94E-05 16414821000 4076915 3687562 4484712 378722.4 4933358 3509470 3876518.3 3470674 4359767 2216843.2 TRUE FALSE FALSE 3791144.312 3395346.157 6221312.591 881684.8868 4314570.238 3076507.273 2906572.42 2680477.294 4737675.114 1661731.233 2.281442531 2.043258313 3.743874139 0.530582124 2.596430849 1.851386801 1.74912306 1.613063076 2.851047762 1 20.66425563 -5.254629626 24.99881892 1.807704368 2.624898163 0.242928573 0.75800282 873.2155776 3205594.065 0.197810733 0.333074467 5.56E-06 5.254629626 0.817193795 LGSQPIRAS(ph)NPDLR ddPTM_HeLa_A485_30min_R1 4 LGSQPIRASNPDLR 14 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR;LGS(0.004)QPIRAS(0.996)NPDLR;LGS(0.023)QPIRAS(0.977)NPDLR ;;; 112.56 0.00011209 2223370000 2136180 2793320 2608020 2221100 3091760 2914720 3264590 3463470 2582250 3279570 TRUE FALSE FALSE 2611365.871 3119974.475 3572835.127 2342433.069 2783933.519 3067330.232 2567083.677 2614048.552 3100483.889 2462033.555 1.060654054 1.267234749 1.451172393 0.951422073 1.130745563 1.245852326 1.04266803 1.061743674 1.259318291 1 21.23141899 -5.269635058 24.99197505 1.10651082 1.260441838 0.250712365 0.126952769 889.4137842 2712186.285 0.035727055 0.054021754 5.37E-06 5.269635058 0.153931018 LGSQPIRAS(ph)NPDLR ddPTM_HeLa_A486_30min_R1 4 LGSQPIRASNPDLR 14 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR;LGS(0.002)QPIRAS(0.998)NPDLR;LGS(0.336)QPIRAS(0.664)NPDLR ;;; 120.92 3.46E-05 2391830000 2350070 2690450 2516460 893060 3480370 2475030 2837040 2853670 2498610 2820810 TRUE FALSE FALSE 2185342.229 2477248.944 3490900.705 2079088.813 3043829.541 2169685.963 2127182.585 2203951.636 2715191.527 2114460.816 1.033522216 1.17157477 1.650964955 0.983271384 1.439529888 1.026117839 1.006016555 1.042323234 1.284105861 1 21.01185839 -6.294124835 24.82977437 1.070251867 1.257911213 0.182896856 0.194481597 1063.342932 807773.6688 0.067402926 0.059447605 5.08E-07 6.294124835 0.187659346 LGSS(ph)SNLQFK ddPTM_HeLa_A485_30min_R1 2 LGSSSNLQFK 10 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 LGS(0.308)S(0.638)S(0.054)NLQFK;LGS(0.356)S(0.643)S(0.001)NLQFK ; 190.68 6.05E-10 451950000 689220 512477 350372 866720 638920 575100 939070 885330 421385 1181030 TRUE FALSE FALSE 842534.6112 572406.7272 479989.183 914066.7189 575306.8814 605211.3467 738430.023 668201.4294 505953.1043 886620.9562 0.950275995 0.64560478 0.541369093 1.030955464 0.648875799 0.682604378 0.832858752 0.753649488 0.570653221 1 19.75795794 -10.44178918 3.063138718 1.005087942 0.738425255 0.212271068 0.150443819 45855654.25 56850813.3 2022316.864 0.035942202 3.62E-11 10.44178918 -0.266662688 LGSS(ph)SNLQFK ddPTM_HeLa_A486_30min_R1 2 LGSSSNLQFK 10 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 LGS(0.072)S(0.856)S(0.072)NLQFK;LGS(0.327)S(0.623)S(0.05)NLQFK ; 187.78 8.86E-10 613470000 732060 707190 318590 432220 605820 789930 949880 853870 509850 1137100 TRUE FALSE FALSE 680746.3744 651149.6889 441956.5801 1006230.003 529832.4066 692476.468 712209.9772 659462.4409 554044.2085 852362.7587 0.798658045 0.763934935 0.518507614 1.180518497 0.621604359 0.812419901 0.835571439 0.773687534 0.650009873 1 19.70110803 -11.10734108 2.454713044 1.411758797 0.775617087 0.144287491 0.165881761 51846149.85 17500715.62 118872970.6 0.040081305 7.81E-12 11.10734108 -0.63614171 LGSSGLGS(ph)ASSIQAAVR ddPTM_HeLa_A486_30min_R1 1 LGSSGLGSASSIQAAVR 17 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 LGSS(0.001)GLGS(0.584)AS(0.036)S(0.379)IQAAVR 108.45 3.97E-05 0 56767 59061 43820 74821 73972 85222 90518 93936 54570 134390 TRUE FALSE FALSE 52787.92645 54380.79126 60788.27754 174187.0692 64693.742 74708.17611 67869.439 72548.82341 59300.17154 100737.8693 0.524012736 0.539824712 0.603430249 1.729112106 0.642198832 0.741609651 0.673723194 0.720174289 0.588658188 1 16.6202466 -1.000000002 0.028013716 1.328426873 1.45E-11 0.025024429 0.338526216 12068.16133 26.0115969 405.375193 926.7027955 0.1 1.000000002 -1.328426873 LGSSGLGSASS(ph)IQAAVR ddPTM_HeLa_A486_30min_R1 1 LGSSGLGSASSIQAAVR 17 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 LGSSGLGS(0.384)AS(0.175)S(0.441)IQAAVR 110.32 1.03E-05 0 73307 82891 58260 65232 91031 98084 112140 98516 74750 131230 TRUE FALSE FALSE 68168.55786 76322.41528 80819.83226 151863.3926 79613.04315 85983.39333 84081.3859 76086.05739 81229.39019 98369.15384 0.692987133 0.775877522 0.821597311 1.543811111 0.809329348 0.87408898 0.854753575 0.773474757 0.82576079 1 16.58591837 LGSVDS(ph)FER ddPTM_HeLa_A486_30min_R1 3 LGSVDSFER 9 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 LGS(0.004)VDS(0.996)FER;LGSVDS(1)FER;LGSVDS(1)FER ;; 148.19 8.30E-05 699080000 453290 543878 348235 203031 566493 638774 704100 838560 509732 553335 TRUE FALSE FALSE 421516.7118 500779.1265 483080.9181 472666.4286 495438.1656 559968.5585 527926.7328 647638.1936 553915.9802 414776.3144 1.016250681 1.207347452 1.164678168 1.139569479 1.194470727 1.350049506 1.272798649 1.561415566 1.335457115 1 18.66197399 -6.13479228 2.802576291 1.338795543 1.139954521 0.239823808 0.137766548 0.341024626 5.180473888 0.047390414 0.047596125 7.33E-07 6.13479228 -0.198841022 LGTLNGS(ph)QEEMWQK ddPTM_HeLa_A486_30min_R1 1 LGTLNGSQEEMWQK 14 0 H0YDJ4;H9KV85;E9PN67;C9J066;Q8N4C6-11;Q8N4C6-4;Q8N4C6-9;Q8N4C6-2;Q8N4C6;Q8N4C6-5;Q8N4C6-10;Q8N4C6-7 H0YDJ4 NIN Ninein 1 0 LGTLNGS(1)QEEMWQK 133.86 4.40E-05 0 21665 20259 13070 18896 36302 33105 40626 38579 15608 37153 TRUE FALSE FALSE 20146.39538 18653.60306 18131.05403 43990.84295 31748.66466 29020.84169 30460.9451 29795.40387 16960.91401 27849.64697 0.723398591 0.669796751 0.651033532 1.579583504 1.14000241 1.042054203 1.093764137 1.069866483 0.609017199 1 14.76537142 LGVADIIDCVVLTS(ph)SPEATETSQQLQLR ddPTM_HeLa_A486_30min_R1 1 LGVADIIDCVVLTSSPEATETSQQLQLR 28 0 Q8NCF5;Q8NCF5-2;H3BSZ7;Q8NCF5-3 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LGVADIIDCVVLT(0.054)S(0.439)S(0.439)PEAT(0.058)ET(0.008)S(0.001)QQLQLR 56.625 0.019184 32068000 22511 34076 23457 14676 38938 32831 39116 35828 27423 34659 TRUE FALSE FALSE 20933.09515 31375.69366 32540.1786 34166.46968 34054.03296 28780.64502 29328.76307 27670.74652 29800.04772 25980.16081 0.805733856 1.207678963 1.252501047 1.315098468 1.310770676 1.107793182 1.128890744 1.06507218 1.147030919 1 14.66512274 -6.489164681 24.11504629 1.094624044 1.193459585 0.086282716 0.140116004 1033.63706 739341.9336 0.051128252 0.045055189 3.24E-07 6.489164681 0.098835541 LGVAS(ph)T(ph)EAQRGVS(ph)FKLEEK ddPTM_HeLa_A486_30min_R1 1 LGVASTEAQRGVSFKLEEK 19 2 Q8WW59 Q8WW59 SPRYD4 SPRY domain-containing protein 4 3 0 LGVAS(1)T(1)EAQRGVS(1)FKLEEK 41.412 0.010547 0 322570 220550 82634 109210 199790 335540 429400 365610 172340 382440 TRUE FALSE FALSE 299959.5088 203072.8148 114632.0978 254246.3992 174730.4752 294144.4863 321959.5783 282368.5842 187278.57 286674.5347 1.046341661 0.708374097 0.399868436 0.886881702 0.609508185 1.026057255 1.123083983 0.984979655 0.653279407 1 18.12905423 -6.268681536 24.89436109 0.96689154 0.719335914 0.253674613 0.194143946 751.5017897 2583222.38 0.069038839 0.062138939 5.39E-07 6.268681536 -0.247555625 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK ddPTM_HeLa_A485_30min_R1 1 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK 35 0 P00338;P00338-3;P00338-2;P00338-5;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 138.52 1.31E-20 28923000 11354 16230 18320 7923.3 21218 12679 17191 18989 12497 14394 FALSE FALSE TRUE 13879.65813 18127.95732 25097.33036 8356.129816 19105.46142 13342.85283 13518.00241 14331.91798 15005.03327 10805.8407 1.284458888 1.677607307 2.322570825 0.77329752 1.768068024 1.23478156 1.250990347 1.326312165 1.388603967 1 13.3995237 -5.26583713 24.99971938 1.283596391 1.753151822 0.322483897 0.337855032 467.4190787 2657121.613 0.092031146 0.142023613 5.42E-06 5.26583713 0.46955543 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK ddPTM_HeLa_A486_30min_R1 3 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK 35 0 P00338;P00338-3;P00338-2;P00338-5;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ;; ;; 174.53 3.28E-30 94247400 29596.7 37814.7 38399.8 5452 54264.3 31457 35546.1 34545.2 40318.5 20084.9 FALSE FALSE TRUE 27522.12417 34818.12545 53269.23094 12692.53153 47457.9655 27576.15517 26652.08981 26680.01208 43813.34004 15055.51031 1.828043261 2.312649969 3.538188334 0.843048908 3.152199064 1.831632047 1.770254828 1.772109449 2.910119893 1 13.87800399 -10.96737189 2.855528752 0.024765574 2.208671172 0.189720069 0.754682581 221421206.4 206201184.2 1434938693 0.176659824 1.08E-11 10.96737189 2.183905598 LGVIEDHSNR ddPTM_HeLa_A485_30min_R1 5 LGVIEDHSNR 10 0 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 0 ;;;; ;;;; 185.6 3.81E-09 1038539000 1321232 1942445 2064313 1424098 2377061 1907727 2117928 2469536 1766117 1896253 FALSE FALSE TRUE 1615135.5 2169597.046 2827988.282 1501892.868 2140392.46 2007612.636 1665415.381 1863878.424 2120560.482 1423552.025 1.134581295 1.524072888 1.986571781 1.055031949 1.503557596 1.410283994 1.169901311 1.309315284 1.489626262 1 20.44106379 -12.79099836 0.167731688 8.92E-09 1.51488929 0.182773154 0.251103642 141.1699256 1.916592618 49.10305363 1.000411406 1.62E-13 12.79099836 1.514889281 LGVIEDHSNR ddPTM_HeLa_A486_30min_R1 4 LGVIEDHSNR 10 0 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 0 ;;; ;;; 181.87 5.06E-09 802500000 1166800 1414180 1319890 456960 1790640 1266730 1403680 1497640 1190880 1310560 FALSE FALSE TRUE 1085013.345 1302115.226 1830986.756 1063825.973 1566041.234 1110453.732 1052464.417 1156660.065 1294106.437 982387.2457 1.104466034 1.325460232 1.863813648 1.082898804 1.594118044 1.130362529 1.071333552 1.177397274 1.317307857 1 19.9059323 -6.29332703 24.07517551 1.146120823 1.39913574 0.243404239 0.224429004 645.2571981 487166.6922 0.078096907 0.068882467 5.09E-07 6.29332703 0.253014916 LGVS(ph)VS(ph)PSR ddPTM_HeLa_A485_30min_R1 5 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 LGVS(1)VS(0.998)PS(0.002)R;LGVS(1)VS(0.997)PS(0.003)R;LGVS(1)VS(0.999)PS(0.001)R;LGVS(1)VS(1)PSR;LGVS(1)VS(0.98)PS(0.02)R ;;;; 151.55 0.00013194 1527330000 3082120 3344600 3250240 3186780 4507890 3418220 4049680 4187200 3320690 4354650 TRUE FALSE FALSE 3767726.961 3735721.876 4452639.03 3360865.722 4059068.643 3597192.714 3184432.785 3160282.635 3987122.024 3269115.896 1.152521685 1.14273155 1.362031562 1.028065639 1.241641096 1.100356435 0.97409602 0.966708656 1.219633121 1 21.64046909 -6.501901526 6.277033282 1.036915859 1.183301547 0.308697072 0.102805924 0.209315133 31.65441058 0.036717805 0.030819394 3.15E-07 6.501901526 0.146385689 LGVS(ph)VS(ph)PSR ddPTM_HeLa_A486_30min_R1 5 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 LGVS(1)VS(0.909)PS(0.092)R;LGVS(1)VS(1)PSR;LGVS(1)VS(0.997)PS(0.003)R;LGVS(1)VS(0.999)PS(0.001)R;LGVS(1)VS(1)PSR ;;;; 148.18 0.00017305 2228960000 1978879.7 2152295 1642952.9 709658.6 2315595.3 1976680 2103587.2 2204780.4 1686990 2066595 TRUE FALSE FALSE 1840170.452 1981739.306 2279148.263 1652121.085 2025151.745 1732817.319 1577247.433 1702800.033 1833219.651 1549106.161 1.187891765 1.27927921 1.47126667 1.06649959 1.307303396 1.118591716 1.018166135 1.099214551 1.18340479 1 20.56300459 -6.369419125 4.782298994 1.081812331 1.263793889 0.419608311 0.105638407 0.23883127 8.590406735 0.038112333 0.033386514 4.27E-07 6.369419125 0.181981559 LGVSVS(ph)PSR ddPTM_HeLa_A485_30min_R1 8 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 LGVSVS(0.999)PS(0.001)R;LGVS(0.065)VS(0.911)PS(0.024)R;LGVSVS(0.999)PS(0.001)R;LGVSVS(0.99)PS(0.01)R;LGVSVS(0.988)PS(0.012)R;LGVS(0.001)VS(0.999)PSR;LGVSVS(1)PSR;LGVS(0.007)VS(0.888)PS(0.105)R ;;;;;;; 192.14 1.15E-08 30485990000 7422820 9998510 10157850 8425830 11943410 9803650 11509760 12104940 9439260 11071170 TRUE FALSE FALSE 9074000.701 11167748.77 13915661.42 8886111.758 10754282.16 10316953.95 9050605.75 9136184.485 11333632.9 8311331.069 1.091762634 1.343677526 1.674299977 1.069156274 1.293930187 1.241311875 1.088947808 1.099244442 1.363636318 1 22.98664811 LGVSVS(ph)PSR ddPTM_HeLa_A486_30min_R1 10 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 LGVS(0.001)VS(0.998)PS(0.002)R;LGVS(0.002)VS(0.995)PS(0.003)R;LGVS(0.014)VS(0.985)PS(0.001)R;LGVS(0.001)VS(0.998)PS(0.001)R;LGVSVS(0.999)PS(0.001)R;LGVS(0.001)VS(0.999)PSR;LGVSVS(0.999)PS(0.001)R;LGVSVS(0.999)PSR;LGVS(0.048)VS(0.824)PS(0.128)R;LGVS(0.042)VS(0.789)PS(0.168)R ;;;;;;;;; 180.66 3.63E-08 38082830000 8795950 10373280 9077160 3155748 12101390 9020490 10336600 11052850 8479580 9233450 TRUE FALSE FALSE 8179399.327 9551263.514 12592079.45 7346740.827 10583520.83 7907633.657 7750273.351 8536357.337 9214596.822 6921334.02 1.181766304 1.379974364 1.819313937 1.061463123 1.529115745 1.142501378 1.119765832 1.23333989 1.331332485 1 22.7226187 -6.277784611 24.61202288 1.177120264 1.398647328 0.237634468 0.204417053 1066.577852 1606006.888 0.071159463 0.062946865 5.27E-07 6.277784611 0.221527063 LGVSVSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 LGVS(0.019)VS(0.48)PS(0.501)R 88.134 0.0038718 348210000 392540 481990 526180 425960 524960 480610 556170 664620 456870 599640 TRUE FALSE FALSE 479859.1688 538354.5377 720835.8782 449229.1162 472693.1392 505773.9964 437339.736 501620.9029 548559.6183 450160.7836 1.06597284 1.19591612 1.601285373 0.997930368 1.050054017 1.123540777 0.971518959 1.114314976 1.218585977 1 18.78008085 LGVTVLSR ddPTM_HeLa_A485_30min_R1 2 LGVTVLSR 8 0 O75828 O75828 CBR3 Carbonyl reductase [NADPH] 3 0 0 ; ; 169.06 9.81E-05 205765000 108138 125015 128553 110298 140099 134593 162713 173340 118343 166132 FALSE FALSE TRUE 132192.925 139634.4168 176110.1042 116323.3005 126150.2516 141640.0814 127948.0383 130828.0932 142093.3546 124718.3498 1.05993164 1.119598014 1.412062495 0.932687937 1.011481084 1.135679566 1.025895856 1.048988328 1.13931394 1 16.92831422 -5.296220703 24.99974061 1.046007725 1.189437797 0.324819495 0.102235954 754.2994261 542165.5306 0.029067256 0.04311549 5.06E-06 5.296220703 0.143430072 LGVTVLSR ddPTM_HeLa_A486_30min_R1 2 LGVTVLSR 8 0 O75828 O75828 CBR3 Carbonyl reductase [NADPH] 3 0 0 ; ; 167.9 2.61E-05 67113000 116213 138965 124164 45914 172386 137396 158864 158258 136042 150133 FALSE FALSE TRUE 108067.0688 127952.9073 172243.626 106890.1124 150763.7404 120445.4785 119114.5469 122226.1081 147834.2301 112538.7196 0.960265669 1.136967861 1.530527685 0.949807433 1.339661061 1.07025812 1.058431688 1.086080494 1.313629928 1 16.78006193 LGVVEK(ac)K ddPTM_HeLa_A486_30min_R1 2 LGVVEKK 7 1 O15228-2;O15228 O15228-2 GNPAT Dihydroxyacetone phosphate acyltransferase 0 1 ; LGVVEK(1)K;LGVVEK(1)K 112.17 0.026283 94292000 163258 188705 110154 77023 187083 210093 241090 230070 162592 251900 FALSE TRUE FALSE 151814.4573 173751.3285 152808.5788 179313.4365 163617.3057 184173.8617 180766.732 177688.0834 176685.6055 188822.6004 0.804005754 0.920182903 0.809270598 0.949639694 0.866513359 0.975380391 0.957336313 0.941031863 0.935722764 1 17.52667193 -1 0.181735911 0.99989879 0.241499322 0.569624748 0.041923416 40.90525329 0.463418653 0.088812478 8.593798618 0.1 1 -0.758399468 LGWDPKPGEGHLDALLR ddPTM_HeLa_A485_30min_R1 1 LGWDPKPGEGHLDALLR 17 1 P55786-2;E9PLK3;P55786 P55786-2 NPEPPS Puromycin-sensitive aminopeptidase 0 0 76.586 0.017398 48224000 90008 94986 77403 94523 112010 95813 125860 126610 89596 143760 FALSE FALSE TRUE 110029.9691 106093.7864 106037.5907 99686.55215 100857.8911 100829.6205 98968.98282 95558.69898 107577.0954 107923.2777 1.019520269 0.983048224 0.982527523 0.923679805 0.934533247 0.934271296 0.917030922 0.885431772 0.996792329 1 16.71964654 -4.937939543 1.755691931 0.935156367 1.00921032 0.331852241 0.034211837 0.389665329 2.290327122 0.009727745 0.031052121 1.15E-05 4.937939543 0.074053953 LGYFLALTGFR ddPTM_HeLa_A485_30min_R1 2 LGYFLALTGFR 11 0 H7C400;B8ZZZ0;Q6NVY1-2;Q6NVY1 H7C400 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" 0 0 ; ; 282.35 1.58E-46 189515000 126956 127494 130334 130722 141317 168745 213082 242120 79258 211482 FALSE FALSE TRUE 155196.9242 142403.3142 178549.9703 137863.0119 127246.9833 177580.2273 167555.29 182739.6904 95164.3536 158763.4294 0.977535726 0.896952874 1.124629084 0.868354963 0.801487998 1.118520984 1.055377114 1.15101879 0.599409788 1 17.27651911 -6.271878699 24.85688824 0.998710974 0.938712153 0.020361967 0.161803302 3079.793828 7333223.917 0.056397019 0.050271644 5.35E-07 6.271878699 -0.059998821 LGYFLALTGFR ddPTM_HeLa_A486_30min_R1 2 LGYFLALTGFR 11 0 H7C400;B8ZZZ0;Q6NVY1-2;Q6NVY1 H7C400 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" 0 0 ; ; 241.96 2.75E-27 156667000 96268 160220 190953 66086 210359 182766 221669 200201 207186 195674 FALSE FALSE TRUE 89520.11033 147523.5837 264895.1155 153851.5478 183973.8127 160218.1891 166205.0716 154619.6027 225145.0493 146675.9568 0.61032573 1.005778908 1.805988666 1.048921386 1.254287456 1.092327554 1.133144622 1.054157791 1.534982653 1 17.16227288 -4.40910779 4.313407601 1.236168365 0.635906386 0.387614489 0.240793033 0.222414513 6.375924515 0.059103663 0.27479701 3.90E-05 4.40910779 -0.60026198 LGYLPVQTVLEGDNLETPS(ph)QSPQLFHDDTHSR ddPTM_HeLa_A485_30min_R1 2 LGYLPVQTVLEGDNLETPSQSPQLFHDDTHSR 32 0 Q5JT44;Q5JT49;H0Y337 Q5JT44 UTRN 1 0 LGYLPVQTVLEGDNLET(0.018)PS(0.486)QS(0.486)PQLFHDDT(0.005)HS(0.005)R;LGYLPVQTVLEGDNLET(0.094)PS(0.441)QS(0.441)PQLFHDDT(0.013)HS(0.013)R ; 175.67 3.53E-15 375580000 76769 119368 125381 93499 146043 116618 117735 148269 122024 145408 TRUE FALSE FALSE 93845.9992 133327.0492 171764.6494 98606.61362 131502.4461 122723.9382 92579.95544 111905.7953 146513.0975 109160.4616 0.859706874 1.221385905 1.573506074 0.903318034 1.204671033 1.124252649 0.848108867 1.025149524 1.342181 1 16.73609088 LGYLPVQTVLEGDNLETPSQS(ph)PQLFHDDTHSR ddPTM_HeLa_A485_30min_R1 1 LGYLPVQTVLEGDNLETPSQSPQLFHDDTHSR 32 0 Q5JT44;Q5JT49;H0Y337 Q5JT44 UTRN 1 0 LGYLPVQTVLEGDNLET(0.003)PS(0.207)QS(0.789)PQLFHDDTHSR 231.53 7.70E-40 252410000 20107 35715 45152 31339 41700 39224 38885 48734 49010 48097 TRUE FALSE FALSE 24579.73278 39891.55857 61855.60373 33050.97022 37548.20158 41277.70799 30576.90209 36781.91009 58845.85745 36107.30306 0.68074131 1.10480582 1.713105064 0.915354164 1.039906013 1.143195545 0.846834283 1.018683396 1.629749454 1 15.14000305 -4.274856499 5.517744617 1.154928419 0.66706481 0.215946431 0.273171746 0.214949537 24.67259327 0.068637462 0.382879841 5.31E-05 4.274856499 -0.487863609 LGYLPVQTVLEGDNLETPSQS(ph)PQLFHDDTHSR ddPTM_HeLa_A486_30min_R1 2 LGYLPVQTVLEGDNLETPSQSPQLFHDDTHSR 32 0 Q5JT44;Q5JT49;H0Y337 Q5JT44 UTRN 1 0 LGYLPVQTVLEGDNLETPS(0.201)QS(0.765)PQLFHDDT(0.014)HS(0.021)R;LGYLPVQTVLEGDNLETPS(0.017)QS(0.982)PQLFHDDT(0.001)HSR ; 279.42 7.20E-78 363510000 132309 160826 134978 43929 200601 130514 144046 158923 147728 155091 TRUE FALSE FALSE 123034.8223 148081.562 187245.0964 102268.932 175439.752 114412.5096 108004.1672 122739.7022 160533.182 116255.2041 1.058316686 1.273762866 1.610638404 0.879693368 1.5090916 0.984149574 0.929026516 1.055778131 1.380868781 1 16.82693577 -6.30188346 24.99308343 1.064642094 1.26436713 0.161519763 0.223481554 982.4331827 607107.7354 0.077361139 0.068226737 4.99E-07 6.30188346 0.199725036 LGYLVS(ph)PPQQIR ddPTM_HeLa_A485_30min_R1 2 LGYLVSPPQQIR 12 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 LGYLVS(1)PPQQIR;LGYLVS(1)PPQQIR ; 175.29 3.71E-10 167540000 134352 168816 160261 135967 197916 159548 178799 201888 150340 179298 TRUE FALSE FALSE 164238.1389 188557.5627 219548.2129 143394.5329 178210.7881 167901.6866 140597.133 152374.6515 180511.859 134602.3083 1.220173271 1.400849399 1.631088022 1.065320013 1.323980178 1.247390841 1.044537309 1.132035946 1.341075508 1 17.03834363 -5.277829102 24.89444073 1.17545682 1.415718175 0.397784989 0.141931976 791.2626039 1201851.491 0.040038532 0.059584088 5.27E-06 5.277829102 0.240261355 LGYLVS(ph)PPQQIR ddPTM_HeLa_A486_30min_R1 3 LGYLVSPPQQIR 12 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 LGYLVS(1)PPQQIR;LGYLVS(1)PPQQIR;LGYLVS(1)PPQQIR ;; 138.77 7.18E-06 548636000 334555 351050 274919 176289 417860 349020 394100 384010 268070 390810 TRUE FALSE FALSE 311104.4221 323231.5195 381374.9994 410409.7012 365448.1024 305961.461 295492.0116 296579.3059 291306.5234 292948.6323 1.061976019 1.103372687 1.301849394 1.400961315 1.247481852 1.044420172 1.008681998 1.01239355 0.99439455 1 18.16028819 -6.326712944 4.51819086 1.008564738 1.230885794 0.58409866 0.089291478 0.183225344 7.474793939 0.036787 0.032616168 4.71E-07 6.326712944 0.222321056 LGYVCPQEVAPMLQQFIRPWCTSLR ddPTM_HeLa_A485_30min_R1 1 LGYVCPQEVAPMLQQFIRPWCTSLR 25 1 Q92973-3;Q92973-2;Q92973;O14787-2;O14787;S4R398 Q92973-3 TNPO1;TNPO2 Transportin-1;Transportin-2 0 0 65.901 0.0084126 4302300 2612.5 2851.2 3135.7 2082.2 2982 3055.8 4635.1 3524.9 2540.6 3170 FALSE FALSE TRUE 3193.641612 3184.623038 4295.725917 2195.945314 2685.10161 3215.796963 3644.77302 2660.412748 3050.475116 2379.77734 1.341991773 1.338202102 1.805095731 0.922752426 1.128299511 1.351301615 1.53156052 1.11792507 1.281832155 1 11.21661088 -14 0.106202948 8.51E-09 1.50462284 0.171012052 0.224245789 338.3795693 2.406795172 74.08703326 3.277455894 1.00E-14 14 1.504622832 LHAVDEELAS(ph)SPVCMDSFQPMDDSLIAFR ddPTM_HeLa_A486_30min_R1 1 LHAVDEELASSPVCMDSFQPMDDSLIAFR 29 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 0 LHAVDEELAS(0.538)S(0.462)PVCMDSFQPMDDSLIAFR 130.9 2.67E-06 38059000 16313 19917 15170 9401.7 25675 18713 19359 20722 16917 21997 TRUE FALSE FALSE 15169.54294 18338.70438 21044.23027 21887.63274 22454.60209 16404.38032 14515.17344 16004.05296 18383.37918 16488.80802 0.91999027 1.11219103 1.276273593 1.32742359 1.361808692 0.994879696 0.880304593 0.970600964 1.114900432 1 14.00919949 -6.364966895 8.661923337 0.982114825 1.205844014 0.396068355 0.127695314 0.364708717 27.83337658 0.049252433 0.043390175 4.32E-07 6.364966895 0.223729189 LHAVDEELASS(ph)PVCMDSFQPMDDSLIAFR ddPTM_HeLa_A485_30min_R1 1 LHAVDEELASSPVCMDSFQPMDDSLIAFR 29 0 Q3T8J9-3;Q3T8J9;A0A087WUE6;Q3T8J9-2;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 0 LHAVDEELAS(0.153)S(0.807)PVCMDS(0.039)FQPMDDS(0.001)LIAFR 58.08 0.015652 42216000 12274 17046 17420 19868 21368 16155 20173 20682 20626 25122 TRUE FALSE FALSE 15004.30896 19039.38142 23864.38291 20953.33853 19240.52689 17000.85082 15862.87375 15609.70707 24765.44901 18859.54774 0.795581589 1.009535419 1.265374082 1.111020202 1.020200864 0.901445308 0.841105735 0.827681941 1.313151797 1 14.20300746 -6.009818702 20.51408834 0.957810372 1.05941658 0.028123497 0.167019865 133.1585313 278214.586 0.055136191 0.058929929 9.78E-07 6.009818702 0.101606208 LHAWFSWLHQSQAGPLPLSYR ddPTM_HeLa_A486_30min_R1 1 LHAWFSWLHQSQAGPLPLSYR 21 0 A0A3B3IRW2;A0A3B3IRK6;Q13724-2;Q13724 A0A3B3IRW2 MOGS Mannosyl-oligosaccharide glucosidase 0 0 114.88 1.33E-06 5668500 2254.5 2784.5 3757 1079.8 4263 3574.4 3841.6 3757.1 3825 3601.7 FALSE FALSE TRUE 2096.471192 2563.846079 5211.811016 2513.82897 3728.294789 3133.42687 2880.391048 2901.690347 4156.55408 2699.810877 0.776525204 0.94963914 1.930435595 0.931112987 1.380946651 1.160609766 1.06688623 1.074775412 1.539572314 1 11.39864263 -4.537918835 24.99994443 1.258247421 0.81980309 0.249075639 0.283095669 258.7453908 430091.4223 0.069069316 0.182882051 2.90E-05 4.537918835 -0.438444331 LHCPPS(ph)PHLENPPK ddPTM_HeLa_A485_30min_R1 2 LHCPPSPHLENPPK 14 0 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-2 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 LHCPPS(1)PHLENPPK;LHCPPS(1)PHLENPPK ; 157.74 8.75E-09 419950000 503100 515750 405000 521430 606690 522370 638850 669290 431460 664320 TRUE FALSE FALSE 615012.8593 576062.4761 554826.3535 549914.4006 546285.8134 549720.4855 502354.4786 505145.5781 518050.0644 498717.2499 1.233189466 1.155088331 1.112506843 1.10265767 1.095381829 1.102268842 1.007293168 1.012889725 1.038765081 1 18.92786258 -1.000000021 0.230081781 0.991214468 2.315539844 0.896250913 0.022532744 15.79913911 0.206720289 0.035567337 7.883556628 0.099999995 1.000000021 1.324325376 LHCPPS(ph)PHLENPPK ddPTM_HeLa_A486_30min_R1 1 LHCPPSPHLENPPK 14 0 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-2 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 LHCPPS(1)PHLENPPK 105.39 0.00024873 218360000 117090 119600 79123 40591 120760 111650 124270 122130 94336 129960 TRUE FALSE FALSE 108882.5957 110122.4604 109761.5446 94497.89936 105613.1548 97875.75817 93176.33161 94323.66508 102513.1204 97417.1701 1.117694094 1.130421468 1.12671662 0.970033304 1.084132855 1.004707467 0.956467238 0.968244766 1.052310597 1 16.57188845 -5.251238442 24.54948028 1.005051709 1.125491818 0.690048494 0.036798053 320.1626231 770498.4027 0.010410907 0.01775676 5.61E-06 5.251238442 0.120440109 LHDAIVEVVTCLLR ddPTM_HeLa_A485_30min_R1 1 LHDAIVEVVTCLLR 14 0 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;H0YI79 O00429-7 DNM1L Dynamin-1-like protein 0 0 148.91 3.04E-06 7779100 9574.5 9244.9 10496 10081 13693 8708.8 9820.5 10293 9877.9 15403 FALSE FALSE TRUE 11704.31449 10326.01064 14378.90718 10631.6995 12329.67684 9164.779302 7722.269949 7768.625611 11860.30392 11563.31557 1.012193641 0.892997391 1.24349345 0.919433482 1.066275219 0.792573656 0.66782489 0.671833746 1.025683668 1 13.4972675 -6.266577224 24.6294406 0.800837894 1.025505773 0.308837385 0.142404983 384.429221 1842842.762 0.048595761 0.044161573 5.41E-07 6.266577224 0.224667879 LHDAIVEVVTCLLR ddPTM_HeLa_A486_30min_R1 1 LHDAIVEVVTCLLR 14 0 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;H0YI79 O00429-7 DNM1L Dynamin-1-like protein 0 0 139.3 6.70E-06 9401000 9553.8 11539 9767.1 6764.5 11921 12872 11927 12664 10694 12668 FALSE FALSE TRUE 8884.127956 10624.60762 13549.18269 15748.09786 10425.75702 11283.98351 8942.738449 9780.683653 11620.96453 9495.850345 0.935580031 1.118868477 1.426853015 1.658418918 1.097927689 1.188306797 0.941752252 1.029995556 1.223793985 1 13.21308148 -5.959927918 24.99967209 1.07830609 1.295076894 0.213496001 0.19236667 255.5455006 159425.4675 0.064596486 0.073245428 1.10E-06 5.959927918 0.216770805 LHDFLAHSSEESEETS(ph)SPPR ddPTM_HeLa_A485_30min_R1 4 LHDFLAHSSEESEETSSPPR 20 0 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LHDFLAHSSEESEET(0.008)S(0.608)S(0.384)PPR;LHDFLAHSSEESEET(0.014)S(0.933)S(0.054)PPR;LHDFLAHSSEESEET(0.012)S(0.941)S(0.047)PPR;LHDFLAHSSEESEET(0.002)S(0.577)S(0.421)PPR ;;; 215.98 2.19E-35 1749870000 341555 713310 790360 169377 865650 442906 552639 581608 611433 358571 TRUE FALSE FALSE 417532.7314 796725.3995 1082747.054 178629.6366 779462.8465 466095.8733 434563.163 438967.7261 734141.9947 269185.8487 1.551094656 2.959759599 4.022303025 0.663592226 2.895630845 1.731502141 1.614361101 1.630723636 2.727268161 1 18.03824304 -5.261799488 24.99977571 1.819227204 2.855923065 0.25712731 0.845506405 46.77194475 3247140.911 0.228470391 0.364047028 5.47E-06 5.261799488 1.036695861 LHDFLAHSSEESEETS(ph)SPPR ddPTM_HeLa_A486_30min_R1 3 LHDFLAHSSEESEETSSPPR 20 0 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LHDFLAHSSEESEET(0.013)S(0.657)S(0.33)PPR;LHDFLAHSSEESEET(0.041)S(0.545)S(0.413)PPR;LHDFLAHSSEESEET(0.001)S(0.997)S(0.001)PPR ;; 213.15 3.15E-27 1019780000 334579 370720 383290 22463 480770 244338 284076 282161 370622 104900 TRUE FALSE FALSE 311126.7399 341342.7971 531710.1529 52294.99922 420467.3436 214194.0618 212997.1802 217919.0998 402747.8134 78632.35722 3.956726606 4.340996622 6.761976516 0.665056995 5.347255996 2.723993905 2.708772669 2.771366745 5.121909448 1 16.26283548 -5.250193279 24.99973801 3.065268962 4.952009326 0.273452303 1.563119819 1066.58315 2370977.33 0.405213386 0.693742399 5.62E-06 5.250193279 1.886740364 LHDFLAHSSEESEETSS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 LHDFLAHSSEESEETSSPPR 20 0 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LHDFLAHSSEES(0.001)EET(0.031)S(0.247)S(0.72)PPR;LHDFLAHSSEESEET(0.002)S(0.459)S(0.539)PPR ; 179.03 5.16E-19 613560000 139636 283460 323990 61138 347860 194265 222720 233110 258050 141971 TRUE FALSE FALSE 170697.5465 316608.1812 443847.3833 64477.81413 313225.837 204436.415 175134.0525 175939.407 309838.268 106580.2425 1.601587147 2.970608565 4.164443362 0.60496967 2.938873376 1.918145523 1.643213118 1.650769438 2.907089164 1 16.70158049 -5.260451605 24.99993897 1.880840961 2.918052481 0.240051902 0.893111007 135.7068301 3434607.955 0.240792078 0.388099223 5.49E-06 5.260451605 1.037211519 LHDFLAHSSEESEETSS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 LHDFLAHSSEESEETSSPPR 20 0 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LHDFLAHSSEESEET(0.001)S(0.02)S(0.979)PPR;LHDFLAHSSEESEETS(0.003)S(0.997)PPR ; 259.93 7.46E-59 588660000 333920 345780 389340 17060.6 480270 247701 287107 294172 342918 121535 TRUE FALSE FALSE 310513.9324 318379.1335 540102.8749 39717.93899 420030.0583 217142.1691 215269.7919 227195.4573 372642.4083 91101.84494 3.408426389 3.494760547 5.928561329 0.435972938 4.610554907 2.383510117 2.362957545 2.493862308 4.090393653 1 16.47519265 -5.251001932 24.96559823 2.624276585 4.199000256 0.270907043 1.333317603 1031.723341 2467800.559 0.345775127 0.590829243 5.61E-06 5.251001932 1.574723672 LHDMEMERDMDRKK ddPTM_HeLa_A486_30min_R1 1 LHDMEMERDMDRKK 14 3 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y4X4;A0A2R8YGU1;A0A087WXD9;A0A2R8Y6B2;A0A2R8YG52;A0A2R8Y7D9 Q3V6T2 CCDC88A Girdin 0 0 42.789 0.037678 16878000 13488 21566 19749 3216.9 28415 20981 22169 20524 24153 15933 FALSE FALSE TRUE 12542.56085 19857.03162 27396.3417 7489.105773 24850.92574 18392.57754 16622.08172 15851.13324 26246.60149 11943.27309 1.050177849 1.662612205 2.293872164 0.627056395 2.080746672 1.539994723 1.391752628 1.327201774 2.197605404 1 13.54391065 -10.63277694 2.894800789 0.950658606 1.571655764 0.108594328 0.493780177 91784732.26 88176195.53 33923999.54 0.11782827 2.33E-11 10.63277694 0.620997158 LHDS(ph)LYNEDCTFQQLGTYIHSIR ddPTM_HeLa_A485_30min_R1 1 LHDSLYNEDCTFQQLGTYIHSIR 23 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 LHDS(0.999)LY(0.001)NEDCTFQQLGTYIHSIR 152.12 7.26E-10 26947000 12474 14149 14708 13103 18310 14992 16704 18670 13487 19247 TRUE FALSE FALSE 15248.79827 15803.60247 20149.10125 13818.78371 16486.99211 15776.95794 13135.05394 14091.15323 16193.71719 14449.07711 1.055347559 1.093744766 1.394490533 0.956378293 1.141041188 1.091900736 0.909058332 0.975228599 1.120744049 1 13.81868973 -6.16868345 1.32526568 1.003836788 1.148317678 0.191034072 0.116135245 0.703707434 2.518804648 0.054012952 0.052711036 6.78E-07 6.16868345 0.14448089 LHDS(ph)LYNEDCTFQQLGTYIHSIR ddPTM_HeLa_A486_30min_R1 1 LHDSLYNEDCTFQQLGTYIHSIR 23 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 LHDS(0.876)LY(0.124)NEDCTFQQLGTYIHSIR 90.37 0.0014065 27123000 6060.4 5264.4 5654.3 1797 7427.2 6090.1 5293.2 8102 5254.4 6217 TRUE FALSE FALSE 5635.597256 4847.229771 7843.796387 4183.506815 6495.61132 5338.765382 3968.785374 6257.351465 5709.855623 4660.222734 1.209297833 1.040128347 1.68313766 0.897705336 1.393841387 1.145603051 0.851629976 1.342715107 1.225232344 1 12.18618319 -6.502717537 24.07203898 1.114191481 1.241637385 0.077953027 0.229032946 1460.219697 1743475.263 0.079392953 0.069081884 3.14E-07 6.502717537 0.127445904 LHDS(ph)LYNEDCTFQQLGTYIHSIRDPVHNR ddPTM_HeLa_A485_30min_R1 2 LHDSLYNEDCTFQQLGTYIHSIRDPVHNR 29 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 LHDS(0.962)LY(0.038)NEDCTFQQLGTYIHSIRDPVHNR;LHDS(1)LYNEDCTFQQLGTYIHSIRDPVHNR ; 221.13 1.11E-38 771020000 77932 76640 76997 70123 103064 70567 89515 88557 65511 94273 TRUE FALSE FALSE 95267.70454 85602.38132 105481.3944 73953.64193 92802.58628 74261.779 70389.38898 66838.2569 78658.4568 70772.47607 1.346112357 1.2095434 1.490429617 1.044949196 1.311280761 1.049303107 0.994587061 0.944410322 1.111427227 1 16.11090077 -6.087578014 1.071969133 0.999337371 1.316008257 0.563332069 0.113592307 0.360493412 0.878135647 0.054761104 0.05864639 8.17E-07 6.087578014 0.316670886 LHDS(ph)LYNEDCTFQQLGTYIHSIRDPVHNR ddPTM_HeLa_A486_30min_R1 3 LHDSLYNEDCTFQQLGTYIHSIRDPVHNR 29 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 LHDS(1)LYNEDCTFQQLGTYIHSIRDPVHNR;LHDS(0.985)LY(0.015)NEDCTFQQLGTYIHSIRDPVHNR;LHDS(0.995)LY(0.005)NEDCTFQQLGTYIHSIRDPVHNR ;; 202.68 7.83E-29 868716000 58311.3 66959 44874.7 26337.8 81711.1 58068.8 78342.3 73603.7 70306.4 77716.4 TRUE FALSE FALSE 54223.97899 61652.92498 62251.38563 61315.72944 71462.13191 50904.86186 58740.22792 56845.74427 76400.61536 58255.70759 0.930792556 1.058315615 1.06858861 1.052527417 1.226697518 0.873817587 1.008317131 0.975796993 1.311470043 1 15.83011178 -7.722407995 24.99993863 1.155737523 1.029094129 0.177011365 0.112943852 236.1225044 151238.6973 0.073852879 0.027912822 1.89E-08 7.722407995 -0.126643394 LHDS(ph)SGSQVGTGFK ddPTM_HeLa_A486_30min_R1 1 LHDSSGSQVGTGFK 14 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 LHDS(0.333)S(0.333)GS(0.333)QVGTGFK 111.78 0.00010245 0 239140 215590 153370 64724 269610 152670 186380 167270 149200 89117 TRUE FALSE FALSE 222377.5209 198505.8632 212758.9714 150680.743 235792.9998 133835.1276 139745.7527 129186.2725 162132.7761 66801.52315 3.328928899 2.971576903 3.18494192 2.255648313 3.529754842 2.003474192 2.091954586 1.933882139 2.427082026 1 16.02759338 -6.868194622 0.12756359 2.46E-12 4.66983315 0.694865907 0.408923494 4.820499887 0.441086597 6.137974025 8.391197464 1.35E-07 6.868194622 4.66983315 LHEQCRPWR ddPTM_HeLa_A485_30min_R1 2 LHEQCRPWR 9 1 P15328 P15328 FOLR1 Folate receptor alpha 0 0 ; ; 142.43 0.00039929 295947700 79135.2 70003.7 49228.5 82613.7 51683.39 62120.91 72941.9 49569.1 56668.9 167715.7 FALSE FALSE TRUE 96738.55223 78190.02376 67440.17072 87126.67724 46537.61022 65373.46479 57357.26718 37412.2005 68041.82843 125907.2626 0.768331788 0.621012817 0.535633683 0.691990879 0.369618156 0.519219173 0.455551697 0.297140925 0.540412261 1 16.94200198 -10.18815964 3.441098434 1.000760809 0.526085336 0.524403836 0.133204846 40505706.92 62714284.94 333952.9742 0.035780855 6.48E-11 10.18815964 -0.474675473 LHFEDEVT(ph)T(ph)SPVLGLK ddPTM_HeLa_A485_30min_R1 1 LHFEDEVTTSPVLGLK 16 0 Q01101 Q01101 INSM1 Insulinoma-associated protein 1 2 0 LHFEDEVT(0.667)T(0.667)S(0.667)PVLGLK 45.973 0.012953 0 7513.1 28064 27707 4311.1 23259 17175 13770 14136 26316 5336.7 TRUE FALSE FALSE 9184.363175 31345.84068 37956.97228 4546.604477 20943.25229 18074.25644 10827.92701 10669.12384 31597.37982 4006.358905 2.292446432 7.824022116 9.474181716 1.134847023 5.227502775 4.511392232 2.702685223 2.663047443 7.88680709 1 11.96807595 -5.264063492 24.99869157 3.728478125 6.659597186 0.216999411 2.546770984 352.5765737 3358842.184 0.695215581 1.086536597 5.44E-06 5.264063492 2.931119061 LHFFMPGFAPLT(ph)SR ddPTM_HeLa_A485_30min_R1 1 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q3ZCM7;A0A075B736;Q5SQY0;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;P04350;Q9BUF5 TUBB;TUBB4B;TUBB8;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 1 0 LHFFMPGFAPLT(0.829)S(0.171)R 96.208 0.0012248 41917000 13952 23484 18900 19795 22881 28213 25967 31654 19933 26194 TRUE FALSE FALSE 17055.57427 26230.24952 25891.89649 20876.35073 20602.8873 29690.18905 20418.93832 23890.80687 23933.37026 19664.31786 0.867336176 1.333900809 1.316694363 1.061636151 1.04772957 1.509850952 1.038375115 1.21493189 1.217096389 1 14.26329252 -9.968769206 4.371768197 0.999994664 1.186640385 0.08479591 0.174256351 51163347.29 66549164.44 3785.388055 0.041878614 1.07E-10 9.968769206 0.186645721 LHFFMPGFAPLT(ph)SR ddPTM_HeLa_A486_30min_R1 2 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q3ZCM7;A0A075B736;Q5SQY0;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;P04350;Q9BUF5 TUBB;TUBB4B;TUBB8;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 1 0 LHFFMPGFAPLT(0.997)S(0.003)R;LHFFMPGFAPLT(0.956)S(0.044)R ; 140.22 2.88E-06 95204000 75331 93726 94656 40366 116011 98785 102311 104512 111890 102679 TRUE FALSE FALSE 70050.68591 86298.81042 131309.3382 93974.08798 101459.8186 86597.91107 76711.70566 80716.89908 121588.7153 76967.51007 0.910133196 1.121236874 1.706035937 1.220957881 1.3182162 1.125122938 0.996676462 1.048713918 1.579740792 1 16.23196196 -6.269940789 23.49632145 1.143509535 1.270998385 0.042718691 0.242573777 953.1311998 2634267.016 0.087384867 0.078417301 5.37E-07 6.269940789 0.12748885 LHFFMPGFAPLTAR ddPTM_HeLa_A485_30min_R1 4 LHFFMPGFAPLTAR 14 0 A0A0B4J269;Q13509;Q13509-2 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 ;;; ;;; 110.38 0.00059483 275169000 145664 194613 215922 145603 237107 220700 265855 309531 157077 198782 FALSE FALSE TRUE 178066.4543 217371.2974 295800.5331 153556.9232 213499.7945 232255.5107 209052.9074 233618.0369 188600.9131 149229.3057 1.193240519 1.456626072 1.98218796 1.028999783 1.430682757 1.556366624 1.400883737 1.565497044 1.263832946 1 17.18717135 -8.027343176 4.791633528 1.000276626 1.455662822 0.263203514 0.23544702 0.241768957 19.33791992 0.223213017 0.05825425 9.39E-09 8.027343176 0.455386196 LHFFMPGFAPLTAR ddPTM_HeLa_A486_30min_R1 3 LHFFMPGFAPLTAR 14 0 A0A0B4J269;Q13509;Q13509-2 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 ;; ;; 103.85 0.00096382 201905000 120813 139949 155340 51205 179881 142533 169329 169876 151918 164862 FALSE FALSE TRUE 112344.6326 128858.9316 215491.8081 119207.8278 157318.6477 124948.7276 126961.0932 131198.9432 165086.3746 123579.4821 0.909088067 1.042721084 1.743750697 0.964624756 1.273015916 1.011079877 1.027363856 1.06165636 1.335872037 1 16.91507971 -6.261287762 24.67056752 1.087308543 1.197261001 0.042454828 0.233431887 42.79660027 6964051.683 0.080678987 0.075910593 5.48E-07 6.261287762 0.109952458 LHFFMPGFAPLTSR ddPTM_HeLa_A485_30min_R1 15 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q3ZCM7;A0A075B736;Q5SQY0;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;P04350;Q9BUF5 TUBB;TUBB4B;TUBB8;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;;;;;;;;;;;;; ;;;;;;;;;;;;;; 191.53 2.95E-17 19988636000 2755572.8 3840710 4032876 2605364.3 4643466 3902750 4736166 5286749 2958965 3873164 FALSE FALSE TRUE 3368540.463 4289847.625 5524804.654 2747688.755 4181146.221 4107091.955 3724245.443 3990165.518 3552802.134 2907655.495 1.158507419 1.4753631 1.900089149 0.944984287 1.437978546 1.412509825 1.280841368 1.37229652 1.221878637 1 21.47142492 -8.909377033 0.345570306 0.918871495 1.428053564 0.198759012 0.231025925 7.345790535 1.326710929 1.079228839 0.218648564 1.23E-09 8.909377033 0.509182069 LHFFMPGFAPLTSR ddPTM_HeLa_A486_30min_R1 15 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A6NNZ2;P68371;Q3ZCM7;A0A075B736;Q5SQY0;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;Q3ZCM7;P04350;Q9BUF5 TUBB;TUBB4B;TUBB8;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;;;;;;;;;;;;; ;;;;;;;;;;;;;; 208.28 4.64E-16 27036413000 11343399.2 13309387.3 12474924.6 3277394.1 16894282 11754176.4 14093700 14019713 12461196.2 13465412 FALSE FALSE TRUE 10548285.49 12254702.98 17305549.5 7629939.095 14775243.62 10304065.62 10567307.19 10827730.4 13541342.72 10093585.19 1.045048444 1.214108045 1.714509678 0.755919621 1.463825127 1.020852891 1.046932977 1.07273384 1.341579079 1 23.26693537 -5.269187292 24.99956812 1.112911501 1.31351066 0.153858815 0.239335912 1203.003399 3881634.225 0.065312568 0.098966125 5.38E-06 5.269187292 0.200599159 LHGGFDS(ph)DCS(ph)EDGEALNGEPELDLTSK ddPTM_HeLa_A485_30min_R1 2 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 2 0 LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK;LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK ; 124.32 9.04E-06 226451000 86875 76058 65890 137461 119047 86817 144526 132190 86013 186296 TRUE FALSE FALSE 106200.044 84952.32148 90265.45291 144970.1464 107194.2627 91362.60388 113646.8394 99770.19523 103275.0201 139855.8357 0.759353684 0.607427792 0.645417851 1.036568446 0.766462566 0.653262722 0.812599909 0.71337885 0.738439119 1 17.09358093 -11.61543921 1.861193742 4.521815915 0.748054389 0.307740042 0.113341716 2924039.192 123627.3666 43526080.08 0.029670878 2.42E-12 11.61543921 -3.773761526 LHGGFDS(ph)DCS(ph)EDGEALNGEPELDLTSK ddPTM_HeLa_A486_30min_R1 4 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 2 0 LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK;LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK;LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK;LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK ;;; 264.19 2.72E-63 981690000 435330 624522 375144 317973 641274 657540 844990 793240 506723 805240 TRUE FALSE FALSE 404815.615 575032.6022 520409.8035 740257.2135 560839.4353 576419.4002 633564.5646 612636.5683 550646.1576 603602.6628 0.670665721 0.952667438 0.862172809 1.226398191 0.929153349 0.954964972 1.049638452 1.014966643 0.912265952 1 19.20323964 -3.849811911 1.332124782 1.003673617 0.146283547 0.522652388 0.092731643 2.745390532 2.060005585 0.02611909 4.153876821 0.000141315 3.849811911 -0.857390069 LHGS(ph)VPNLSR ddPTM_HeLa_A485_30min_R1 2 LHGSVPNLSR 10 0 J3QLK7;Q9BZF2-2;Q9BZF2 J3QLK7 OSBPL7 Oxysterol-binding protein-related protein 7 1 0 LHGS(1)VPNLSR;LHGS(1)VPNLSR ; 79.089 0.0060099 419090000 167677 192725 146006 101378 131503 136718 141367 162552 109290 149253 TRUE FALSE FALSE 204976.1702 215262.5123 200019.6952 106916.0234 118410.0996 143876.3431 111162.7856 122685.8671 131223.5005 112046.9739 1.829377118 1.921180955 1.78514143 0.954207148 1.056789804 1.284071654 0.992108771 1.094950295 1.171147207 1 16.77374416 -5.217428338 6.286155778 1.087015249 1.860479595 0.931846851 0.094959675 0.049288415 5.186628409 0.025959205 0.044872101 6.06E-06 5.217428338 0.773464346 LHGS(ph)VPNLSR ddPTM_HeLa_A486_30min_R1 2 LHGSVPNLSR 10 0 J3QLK7;Q9BZF2-2;Q9BZF2 J3QLK7 OSBPL7 Oxysterol-binding protein-related protein 7 1 0 LHGS(1)VPNLSR;LHGS(1)VPNLSR ; 102.33 0.0009789 384630000 203142 181871 138195 43371 174012 137630 152211 160319 140003 160942 TRUE FALSE FALSE 188902.7948 167458.8796 191707.805 100969.8798 152185.7924 120650.6099 114126.1979 123817.8634 152138.5728 120641.0756 1.565824855 1.388075154 1.589075727 0.83694446 1.261475758 1.00007903 0.945997847 1.026332555 1.261084353 1 16.88036167 -5.251378441 24.99954443 1.051234465 1.501700263 0.722341443 0.132571662 364.3273181 905283.4482 0.034811211 0.059427408 5.61E-06 5.251378441 0.450465799 LHHCPGNHS(ph)WDSTISGSQR ddPTM_HeLa_A485_30min_R1 1 LHHCPGNHSWDSTISGSQR 19 0 O43353-2;O43353 O43353-2 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 1 0 LHHCPGNHS(1)WDSTISGSQR 150.14 1.02E-08 202540000 23584 34741 37702 42215 40963 33081 44099 52308 31818 47811 TRUE FALSE FALSE 28830.17944 38803.65774 51649.53871 44521.09856 36884.57989 34813.07001 34676.88839 39479.38098 38203.58075 35892.5976 0.803234688 1.08110475 1.439002529 1.240397785 1.027637517 0.969923392 0.96612925 1.099931006 1.064386066 1 15.13139872 -5.834786731 9.622192913 1.020634353 1.157824343 0.12532806 0.152218563 0.721917895 88.61739958 0.051127108 0.058042876 1.46E-06 5.834786731 0.137189989 LHIACFPVQLDTLS(ph)DGAS(ph)VDESHGISPPLQGEISQTQENSK ddPTM_HeLa_A485_30min_R1 1 LHIACFPVQLDTLSDGASVDESHGISPPLQGEISQTQENSK 41 0 E9PG22;Q8IW35;Q8IW35-2 E9PG22 CEP97 Centrosomal protein of 97 kDa 2 0 LHIACFPVQLDT(0.216)LS(0.763)DGAS(0.46)VDES(0.491)HGIS(0.069)PPLQGEISQTQENSK 106.06 1.01E-06 22570000 7678.3 8357.9 5134.9 5135.5 9808.8 6294.9 9386.9 8010.3 6269.5 11849 TRUE FALSE FALSE 9386.311345 9335.283701 7034.513191 5416.039361 8832.201431 6624.49123 7381.312131 6045.761365 7527.731143 8895.262365 1.055203429 1.049466932 0.790815706 0.60886786 0.992910728 0.744721286 0.829802633 0.679660826 0.846262969 1 13.11882144 -4.760082158 24.46370984 0.797681743 1.052335316 0.40324128 0.116140841 22.65840094 408358.241 0.028450051 0.067317299 1.74E-05 4.760082158 0.254653573 LHIACFPVQLDTLSDGAS(ph)VDESHGISPPLQGEISQTQENSK ddPTM_HeLa_A486_30min_R1 1 LHIACFPVQLDTLSDGASVDESHGISPPLQGEISQTQENSK 41 0 E9PG22;Q8IW35;Q8IW35-2 E9PG22 CEP97 Centrosomal protein of 97 kDa 1 0 LHIACFPVQLDT(0.015)LS(0.052)DGAS(0.862)VDES(0.057)HGIS(0.013)PPLQGEISQTQENSK 76.809 0.00060334 91584000 12758 10903 10207 4769.3 13175 13252 12108 13619 10499 12969 TRUE FALSE FALSE 11863.73008 10039.00657 14159.42375 11103.17143 11522.46865 11617.10298 9078.450335 10518.251 11409.06177 9721.477986 1.220362799 1.032662583 1.456509368 1.14212792 1.185258935 1.194993497 0.93385495 1.08196007 1.173593335 1 13.24695995 -6.637736047 9.76484986 1.054364682 1.20608318 0.315101182 0.114009512 0.390534686 31.74988524 0.043178554 0.033411423 2.30E-07 6.637736047 0.151718498 LHIVQVVCK ddPTM_HeLa_A486_30min_R1 2 LHIVQVVCK 9 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 ; ; 80.239 0.021567 72962000 130012 137443 136828 46116 171031 133921 158213 144704 153704 153096 FALSE FALSE TRUE 120898.8302 126551.5161 189811.466 107360.3786 149578.6972 117399.1886 118626.434 111758.0581 167027.1865 114759.7651 1.053494925 1.102751613 1.65398967 0.935522816 1.30340714 1.022999555 1.033693594 0.973843559 1.455450752 1 16.80825739 LHKTEDGGWEWS(ph)DDEFDEESEEGK ddPTM_HeLa_A485_30min_R1 7 LHKTEDGGWEWSDDEFDEESEEGK 24 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKT(0.002)EDGGWEWS(0.996)DDEFDEES(0.002)EEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKT(0.001)EDGGWEWS(0.999)DDEFDEESEEGK ;;;;;; 286.34 6.68E-76 5985210000 1409296 838818 457249 3326130 1080939 1289716 2384375 1779664 702131 3910330 TRUE FALSE FALSE 1722789.033 936910.4684 626404.4328 3507828.06 973316.9178 1357243.535 1874933.803 1343198.614 843042.2514 2935556.695 0.586869617 0.319159385 0.213385227 1.194944749 0.331561274 0.462346218 0.638697868 0.457561803 0.287183093 1 21.48520269 -10.38216452 3.357060902 1.004160756 0.502728948 0.243409012 0.264872935 149192272.8 213861504.2 6109199.1 0.066024867 4.15E-11 10.38216452 -0.501431808 LHKTEDGGWEWS(ph)DDEFDEESEEGK ddPTM_HeLa_A486_30min_R1 6 LHKTEDGGWEWSDDEFDEESEEGK 24 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 LHKT(0.006)EDGGWEWS(0.994)DDEFDEESEEGK;LHKT(0.001)EDGGWEWS(0.999)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKT(0.001)EDGGWEWS(0.999)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK;LHKTEDGGWEWS(1)DDEFDEESEEGK ;;;;; 253.76 2.26E-61 4917480000 1341196 1236573 335097 1662541 811834 1709211 2488182 2089477 645592 4679820 TRUE FALSE FALSE 1247185.086 1138582.452 464855.5326 3870479.468 710006.2097 1498345.925 1865612.546 1613748.7 701552.4344 3507962.611 0.355529755 0.324570863 0.132514392 1.10334114 0.202398454 0.427127108 0.531822244 0.460024487 0.199988572 1 21.74220194 -10.68540113 2.939893574 1.068450597 0.42334558 0.313312542 0.259454235 119137613.1 118016389.8 61133565.25 0.065771137 2.06E-11 10.68540113 -0.645105017 LHKTEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_HeLa_A485_30min_R1 2 LHKTEDGGWEWSDDEFDEESEEGKAAISQLR 31 2 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 LHKTEDGGWEWS(1)DDEFDEESEEGKAAISQLR;LHKTEDGGWEWS(1)DDEFDEESEEGKAAISQLR ; 253.39 1.08E-63 261380000 36675 32966 22434.6 83168 57279 50754 119554 129332 34647 126559 TRUE FALSE FALSE 44833.22722 36821.08693 30734.09212 87711.25725 51576.10164 53411.40096 94010.31123 97613.12422 41600.3351 95010.17045 0.47187819 0.387548899 0.323482128 0.923177559 0.542848217 0.562165089 0.989476293 1.02739658 0.437851389 1 16.53579434 -5.49355121 0.590352913 0.85654116 0.325083163 0.358132701 0.215493447 1.35574609 0.874770903 0.147332765 0.415384096 3.21E-06 5.49355121 -0.531457997 LHKTEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_HeLa_A486_30min_R1 3 LHKTEDGGWEWSDDEFDEESEEGKAAISQLR 31 2 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 LHKTEDGGWEWS(1)DDEFDEESEEGKAAISQLR;LHKTEDGGWEWS(1)DDEFDEESEEGKAAISQLR;LHKT(0.473)EDGGWEWS(0.527)DDEFDEESEEGKAAISQLR ;; 276.45 8.05E-78 701300000 94696.4 82938.5 27134.8 204025.3 115210.3 154765.4 271115.4 258168.6 53107.8 348778 TRUE FALSE FALSE 88058.67137 76366.1512 37642.12126 474981.2093 100759.5499 135672.0185 203279.4594 199389.2456 57711.22686 261441.7186 0.336819509 0.292096271 0.143979015 1.816776648 0.385399662 0.518937908 0.7775326 0.76265275 0.220742226 1 17.99612985 LHLETPQPS(ph)PQEGGSVDIWR ddPTM_HeLa_A485_30min_R1 1 LHLETPQPSPQEGGSVDIWR 20 0 O14613 O14613 CDC42EP2 Cdc42 effector protein 2 1 0 LHLET(0.001)PQPS(0.976)PQEGGS(0.023)VDIWR 46.15 0.037005 116660000 38382 55051 51846 33249 63958 47134 52636 53642 47349 54031 TRUE FALSE FALSE 46919.94348 61488.73557 71025.99289 35065.30868 57590.11695 49601.86336 41389.8886 40486.21539 56851.50999 40562.06607 1.156744417 1.515917248 1.751044751 0.864485271 1.419802356 1.222863334 1.020408786 0.99813001 1.401593052 1 15.30784352 -5.260751738 24.99981683 1.143460543 1.478703636 0.345835282 0.215217379 71.68763787 2606223.679 0.059059688 0.094972732 5.49E-06 5.260751738 0.335243093 LHLGFIEIR ddPTM_HeLa_A485_30min_R1 2 LHLGFIEIR 9 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 0 ; ; 177.36 1.99E-08 317500000 194879 290530 289590 187949 325310 255280 305000 346280 237830 271080 FALSE FALSE TRUE 238229.1612 324504.9562 396721.3918 198216.178 292920.9942 268646.0661 239834.2584 261354.2871 285560.2995 203504.7449 1.170631974 1.59458177 1.949445415 0.974012562 1.439381644 1.320097309 1.178519246 1.284266307 1.403211997 1 17.63470291 -5.272414474 24.99208664 1.250863836 1.573855947 0.321751107 0.226618109 869.5777505 1980169.193 0.063122259 0.094647296 5.34E-06 5.272414474 0.322992111 LHLGFIEIR ddPTM_HeLa_A486_30min_R1 3 LHLGFIEIR 9 0 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 0 ;; ;; 158.37 3.19E-06 345679000 320042 322068 280420 110324 382406 292322 336447 346391 284692 357623 FALSE FALSE TRUE 297608.7085 296546.1587 389006.1339 256839.8475 334441.0737 256258.2838 252264.402 267525.331 309369.3318 268071.8731 1.110182523 1.106218848 1.451126258 0.958100693 1.247579874 0.955931261 0.941032713 0.997961211 1.154053681 1 18.03226033 -6.266409211 24.98640982 1.005370655 1.174170578 0.289772865 0.12894398 555.2904314 2791777.781 0.044155449 0.040144642 5.41E-07 6.266409211 0.168799923 LHLGFIQIR ddPTM_HeLa_A485_30min_R1 2 LHLGFIQIR 9 0 Q9NQ29-3;Q9NQ29;B8ZZ10;A8MYV2;Q9NQ29-2 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 0 0 ; ; 145.63 0.00010369 56508000 53925 76765 75624 52678 84917 73649 81647 102171 70028 80032 FALSE FALSE TRUE 65920.43021 85741.99898 103600.4646 55555.66575 76462.36532 77505.14776 64202.45146 77113.40205 84081.97727 60081.49528 1.097183582 1.427094958 1.724332327 0.924671823 1.27264418 1.290000314 1.068589441 1.283480075 1.399465457 1 15.8746331 -5.267500503 24.99984788 1.192969509 1.417292753 0.233728293 0.197009237 754.6035071 3112454.641 0.055212212 0.084324287 5.40E-06 5.267500503 0.224323245 LHLGFIQIR ddPTM_HeLa_A486_30min_R1 1 LHLGFIQIR 9 0 Q9NQ29-3;Q9NQ29;B8ZZ10;A8MYV2;Q9NQ29-2 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 0 0 111.04 0.0020747 27103000 30289 41807 51617 9342.8 62641 46251 36873 63473 32353 35661 FALSE FALSE TRUE 28165.89751 38494.06106 71604.48475 21750.51056 54783.98168 40545.02187 27646.9854 49021.58351 35157.38409 26731.25349 1.053669164 1.440039506 2.678680399 0.813673424 2.049435568 1.516764707 1.034256976 1.833867743 1.315216442 1 14.70623987 -6.529420307 24.54987358 1.352493762 1.630254406 0.067945029 0.526211333 445.0704921 1670281.745 0.196043289 0.152268208 2.96E-07 6.529420307 0.277760644 LHLGHTFSLSK ddPTM_HeLa_A486_30min_R1 1 LHLGHTFSLSK 11 0 A0A6I8PRU9;A0A6I8PTV8;A0A6I8PIP7;A0A6I8PLB3;A0A6I8PS05;A0A6I8PLB8;A0A6I8PRS0;A0A6I8PL42;B4DER1;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5-2;Q9P2J5 A0A6I8PRU9 LARS "Leucine--tRNA ligase, cytoplasmic" 0 0 104.22 0.0018614 8521300 7740.4 6657.3 5289.8 1910.6 7071.4 6159 7931.6 6290.1 6451.3 6523.6 FALSE FALSE TRUE 7197.837931 6129.751303 7338.152226 4447.973356 6184.439074 5399.1652 5947.029788 4857.981542 7010.503878 4890.048098 1.471936019 1.253515544 1.500629867 0.909597056 1.264699027 1.104112903 1.216149549 0.993442486 1.433626774 1 12.25563294 -5.243195515 24.99516162 1.139303626 1.393175985 0.399862048 0.154982083 853.3521203 1169141.014 0.038857073 0.067137393 5.71E-06 5.243195515 0.253872359 LHLIYLINDVLHHCQR ddPTM_HeLa_A485_30min_R1 2 LHLIYLINDVLHHCQR 16 0 Q8IWX8 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 0 ; ; 190.27 5.08E-14 134900000 41810 47361 45994 36699 46846 39372 52735 65930 41052 49094 FALSE FALSE TRUE 51110.49026 52899.45696 63009.09457 38703.77344 42181.84775 41433.45704 41467.73644 49760.56413 49290.75985 36855.76931 1.386770408 1.435310074 1.709612789 1.050141516 1.14451139 1.124205459 1.125135555 1.350143141 1.337396038 1 15.16960285 -5.270496826 24.9966686 1.172441449 1.503038994 0.600252948 0.130232203 465.1363398 1283678.775 0.038140881 0.057493022 5.36E-06 5.270496826 0.330597545 LHLIYLINDVLHHCQR ddPTM_HeLa_A486_30min_R1 2 LHLIYLINDVLHHCQR 16 0 Q8IWX8 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 0 0 ; ; 191.49 3.03E-14 124721000 18044.2 18680.2 17378.9 9423.6 22146.8 17294.6 22342.9 19912.5 14214.7 20589.6 FALSE FALSE TRUE 16779.39476 17199.91292 24108.4755 21938.61704 19368.94183 15160.96809 16752.4701 15378.85844 15446.84164 15433.83014 1.087182806 1.114429326 1.562053961 1.421462906 1.254966632 0.982320522 1.085438284 0.996438233 1.00084305 1 13.91380851 -6.189781226 4.758916312 1.017211468 1.305339305 0.524775063 0.130856199 0.198112888 8.56363317 0.048688386 0.048308483 6.46E-07 6.189781226 0.288127836 LHLPPALSPEEAESALEAAHYFTEDSSSEEALPQEEQEGS(ph)GSEERGEEK ddPTM_HeLa_A486_30min_R1 1 LHLPPALSPEEAESALEAAHYFTEDSSSEEALPQEEQEGSGSEERGEEK 49 1 Q66K14-2;G3V133 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 0 LHLPPALSPEEAESALEAAHYFTEDS(0.001)S(0.003)S(0.003)EEALPQEEQEGS(0.496)GS(0.496)EERGEEK 44.333 0.013985 48576000 8807.5 7567.9 4765.9 4138.6 10638 10691 13675 12654 7626.6 13557 TRUE FALSE FALSE 8190.139732 6968.192042 6611.384115 9634.869953 9303.682845 9372.053118 10253.37036 9772.960435 8287.679829 10162.23896 0.805938511 0.685694567 0.650583414 0.948105038 0.915515063 0.922242938 1.00896765 0.961693626 0.815536799 1 13.31093067 -5.269439712 24.81810814 0.938525119 0.711234403 0.733276995 0.062121064 262.1322051 813169.2784 0.017469214 0.026448908 5.38E-06 5.269439712 -0.227290716 LHLS(ph)PPLGR ddPTM_HeLa_A485_30min_R1 5 LHLSPPLGR 9 0 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 LHLS(1)PPLGR;LHLS(1)PPLGR;LHLS(1)PPLGR;LHLS(1)PPLGR;LHLS(1)PPLGR ;;;; 138.45 0.00011316 1524170000 313137 448544 397130 310536 464844 399646 456651 514340 378154 437617 TRUE FALSE FALSE 382793.2453 500997.319 544044.913 327499.7954 418562.4992 420570.8466 359083.7834 388197.3085 454046.0392 328527.1356 1.165179992 1.524980023 1.656012104 0.996872891 1.274057616 1.280170802 1.093011031 1.181629359 1.382065558 1 18.32565301 -5.262854255 24.99958738 1.185512111 1.456349632 0.37620032 0.162283674 134.9185141 2383902.593 0.044577895 0.070393018 5.46E-06 5.262854255 0.270837521 LHLS(ph)PPLGR ddPTM_HeLa_A486_30min_R1 5 LHLSPPLGR 9 0 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 LHLS(1)PPLGR;LHLS(1)PPLGR;LHLS(1)PPLGR;LHLS(1)PPLGR;LHLS(1)PPLGR ;;;; 111.63 0.00063079 1354130000 453533 500277 430818 150005 559083 439353 490642 487649 400186 456795 TRUE FALSE FALSE 421742.6787 460633.2285 597642.2673 349219.2208 488957.5969 385150.0939 367878.1821 376621.968 434874.4447 342410.5588 1.231687131 1.345265842 1.745396723 1.019884498 1.427986329 1.124819559 1.074377447 1.099913418 1.270038069 1 18.38536766 -6.004113308 1.206155947 1.113555938 1.394956762 0.284968661 0.18309077 0.604249307 1.842016858 0.081805168 0.093348074 9.91E-07 6.004113308 0.281400824 LHLS(ph)PVGIPGSAR ddPTM_HeLa_A486_30min_R1 1 LHLSPVGIPGSAR 13 0 Q9H7P9;Q9H7P9-3;Q9H7P9-2;C9J7S4;C9JVL3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 LHLS(1)PVGIPGSAR 76.82 0.005213 37869000 42750 47878 41896 15170 48704 43386 46933 49570 43725 46437 TRUE FALSE FALSE 39753.44576 44083.97291 58119.25321 35316.52665 42595.09017 38033.47644 35189.86699 38283.99311 47515.11821 34808.87295 1.142049207 1.266457922 1.669667768 1.014584032 1.223684841 1.0926374 1.010945314 1.09983432 1.365028919 1 15.08716748 -5.31927928 24.99976184 1.118635252 1.350102997 0.322979993 0.161764531 322.4438755 139367.0891 0.045573149 0.067595928 4.79E-06 5.31927928 0.231467744 LHLS(ph)PVGIPGSARPSR ddPTM_HeLa_A485_30min_R1 1 LHLSPVGIPGSARPSR 16 1 Q9H7P9;Q9H7P9-3;Q9H7P9-2;C9J7S4;C9JVL3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 LHLS(0.907)PVGIPGS(0.078)ARPS(0.015)R 55.267 0.018524 259980000 158270 229590 196240 161340 256690 206460 216070 248810 180570 222280 TRUE FALSE FALSE 193476.6155 256438.5533 268837.3422 170153.5957 231133.0423 217269.9264 169904.8794 187788.9574 216808.7427 166869.6868 1.159447346 1.536759362 1.611061586 1.019679481 1.385111022 1.302033524 1.018188999 1.125362917 1.299269789 1 17.34836238 -6.055490061 0.811573801 1.120709092 1.410405517 0.253074167 0.178968112 0.906070894 1.320514506 0.111579748 0.132870152 8.80E-07 6.055490061 0.289696424 LHMVLRPFLLR ddPTM_HeLa_A485_30min_R1 4 LHMVLRPFLLR 11 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 ;;; ;;; 187.64 1.01E-09 277031000 133733 152541 151616.1 136365 158904 110803.2 167456 152125 101949.6 189305 FALSE FALSE TRUE 163481.4445 170379.343 207705.2047 143814.2747 143082.9598 116604.6842 131677.6576 114816.1052 122409.9496 142114.7474 1.150348204 1.198885732 1.461531674 1.011958838 1.006812892 0.820496721 0.926558714 0.807911264 0.861345862 1 17.11669675 -5.569770949 2.623793716 0.886953984 1.261907025 0.714949911 0.101729463 0.141488008 1.971771497 0.031454591 0.044901216 2.69E-06 5.569770949 0.374953041 LHMVLRPFLLR ddPTM_HeLa_A486_30min_R1 4 LHMVLRPFLLR 11 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 ;;; ;;; 159.4 5.43E-06 228501000 117565.6 130460.7 102655.6 42630.1 116865.2 105438.4 136689 110258.9 117683.6 141182.8 FALSE FALSE TRUE 109324.8585 120122.519 142406.5975 99245.02721 102206.8769 92430.48223 102487.9665 85155.3554 127884.5092 105829.7079 1.033026177 1.13505481 1.345620245 0.937780413 0.965767353 0.873388806 0.968423408 0.804645095 1.208398962 1 16.69138514 -5.296125708 24.81437638 0.953643164 1.167615893 0.373870884 0.121312787 527.0456502 377043.9377 0.033124333 0.049133963 5.06E-06 5.296125708 0.21397273 LHPGT(ph)SCPRLSPPLHMAPGAGEHHLAR ddPTM_HeLa_A486_30min_R1 1 LHPGTSCPRLSPPLHMAPGAGEHHLAR 27 1 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 0 LHPGT(0.452)S(0.32)CPRLS(0.228)PPLHMAPGAGEHHLAR 160.86 5.80E-14 552610000 114730 89887 98494 22679 139080 91576 109950 111370 80844 84648 TRUE FALSE FALSE 106688.0195 82764.02676 136633.5146 52797.85813 121635.2895 80278.2842 82439.34707 86013.48219 87851.62301 63451.58983 1.681408137 1.304364902 2.153350529 0.832096694 1.916977807 1.265189484 1.299247935 1.35557647 1.384545655 1 15.95336869 -10.26541932 0.074638963 1.32E-07 2.169570221 0.199785498 0.338568696 169.1784934 2.243064555 50.24729375 19.35257161 5.43E-11 10.26541932 2.169570089 LHPGTSCPRLS(ph)PPLHMAPGAGEHHLAR ddPTM_HeLa_A485_30min_R1 2 LHPGTSCPRLSPPLHMAPGAGEHHLAR 27 1 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 0 LHPGT(0.164)S(0.116)CPRLS(0.72)PPLHMAPGAGEHHLAR;LHPGT(0.217)S(0.217)CPRLS(0.566)PPLHMAPGAGEHHLAR ; 172.26 1.66E-14 977550000 272260 412750 390990 248450 485910 369320 413700 498560 330450 359060 TRUE FALSE FALSE 332823.2977 461017.5221 535633.4715 262022.1944 437531.0943 388657.0241 325309.6154 376287.3783 396768.2839 269552.95 1.234723262 1.710304124 1.987117824 0.972062055 1.623173088 1.441857802 1.206848656 1.395968318 1.471949329 1 18.04020917 -12.44810035 0.128990755 8.74E-10 1.679396757 0.215678211 0.266468208 138.2211262 1.67121833 39.6747441 2.298988799 3.56E-13 12.44810035 1.679396756 LHPPS(ph)PVPQGVCPAHR ddPTM_HeLa_A485_30min_R1 2 LHPPSPVPQGVCPAHR 16 0 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 LHPPS(1)PVPQGVCPAHR;LHPPS(1)PVPQGVCPAHR ; 126.19 1.46E-05 523160000 109501 130952 156846 138970 142448 95337 102849 88004 117133 156157 TRUE FALSE FALSE 133859.1197 146265.6973 214869.8623 146561.5792 128265.377 100328.6979 80874.47095 66420.88102 140640.5187 117229.9338 1.141851022 1.247682163 1.832892465 1.250206108 1.094135029 0.855828325 0.689879013 0.566586356 1.199698014 1 16.83898147 -5.935802433 2.199657 0.825281307 1.402039844 0.509330947 0.233807259 0.242326388 2.380926651 0.084538341 0.09650452 1.16E-06 5.935802433 0.576758536 LHPPS(ph)PVPQGVCPAHR ddPTM_HeLa_A486_30min_R1 2 LHPPSPVPQGVCPAHR 16 0 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 LHPPS(1)PVPQGVCPAHR;LHPPS(1)PVPQGVCPAHR ; 135.18 6.03E-06 461200000 126152 141473 134029 38176 129632 121091 119144 122030 129638 113947 TRUE FALSE FALSE 117309.3962 130262.1642 185928.6182 88875.65731 113372.3458 106152.0236 89332.91102 94246.4329 140875.1262 85413.92953 1.373422308 1.52506933 2.176795041 1.040528843 1.327328533 1.242795223 1.045882229 1.103408231 1.649322622 1 16.38218375 -5.292735752 24.99990823 1.206133786 1.675093257 0.424365148 0.261498628 635.817388 507896.9994 0.073081736 0.108409958 5.10E-06 5.292735752 0.468959471 LHPPS(ph)PVPQGVCPAHREPLAAFCGDELR ddPTM_HeLa_A485_30min_R1 2 LHPPSPVPQGVCPAHREPLAAFCGDELR 28 1 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 LHPPS(1)PVPQGVCPAHREPLAAFCGDELR;LHPPS(1)PVPQGVCPAHREPLAAFCGDELR ; 171.88 2.23E-14 718820000 58444 60461 65292 60830 77230 60810 77994 80784 60191 71337 TRUE FALSE FALSE 71444.66617 67531.38801 89446.22783 64152.98887 69540.71003 63993.91757 61329.94475 60971.59734 72270.7816 53553.99876 1.334067816 1.260996183 1.670206332 1.197912207 1.298515734 1.19494191 1.145198233 1.138506904 1.349493656 1 15.70870668 -5.423023952 24.87874045 1.19789536 1.410413112 0.392647499 0.131995748 43.23296952 10764.24215 0.036175457 0.053656863 3.78E-06 5.423023952 0.212517752 LHPPS(ph)PVPQGVCPAHREPLAAFCGDELR ddPTM_HeLa_A486_30min_R1 2 LHPPSPVPQGVCPAHREPLAAFCGDELR 28 1 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 LHPPS(1)PVPQGVCPAHREPLAAFCGDELR;LHPPS(1)PVPQGVCPAHREPLAAFCGDELR ; 202.66 1.13E-28 891900000 128172 156815 139666 52913 195691 158984 150346 174884 137302 146505 TRUE FALSE FALSE 119187.8047 144388.4083 193748.4156 123184.1381 171145.61 139370.1705 112727.8406 135066.7309 149203.4479 109819.1944 1.085309406 1.314782985 1.764249106 1.121699524 1.558430755 1.269087533 1.026485772 1.229900944 1.358628141 1 16.74477071 -6.521339803 24.96933257 1.169322753 1.378083267 0.192502744 0.206321157 103.1442944 1673577.775 0.077131306 0.060631848 3.01E-07 6.521339803 0.208760514 LHQLAMQQSHFPMTHGNTGFS(ph)GIESSSPEVK ddPTM_HeLa_A485_30min_R1 1 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-4;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMTHGNT(0.063)GFS(0.234)GIES(0.234)S(0.234)S(0.234)PEVK 189.43 1.43E-21 2167000000 276640 246520 218600 155160 192970 413430 271000 438120 255550 146480 TRUE FALSE FALSE 338177.6136 275348.3696 299469.2367 163635.9979 173757.2292 435076.5555 213098.6361 330670.3831 306836.541 109965.2318 3.075313971 2.503958434 2.723308376 1.488070323 1.580110608 3.956491961 1.937872841 3.007044843 2.790305045 1 16.74668793 LHQLAMQQSHFPMTHGNTGFSGIESS(ph)SPEVK ddPTM_HeLa_A485_30min_R1 1 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-4;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMTHGNTGFSGIES(0.003)S(0.91)S(0.087)PEVK 187.86 8.17E-21 2755500000 493310 490680 416950 514500 632050 534490 755360 807390 401420 768370 TRUE FALSE FALSE 603045.1076 548060.7577 571197.1557 542605.8322 569120.8827 562475.0699 593971.1653 609376.3366 481981.312 576829.4998 1.045447758 0.950126091 0.990235687 0.940669353 0.986636229 0.975114952 1.02971704 1.056423669 0.835569804 1 19.13778542 LHQLAMQQSHFPMTHGNTGFSGIESS(ph)SPEVK ddPTM_HeLa_A486_30min_R1 4 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-4;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMTHGNTGFSGIES(0.017)S(0.627)S(0.356)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.02)S(0.552)S(0.428)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.021)S(0.729)S(0.25)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.014)S(0.611)S(0.375)PEVK ;;; 222.6 1.11E-38 9144770000 2458220 2288960 1512240 292005 2477370 2294470 3109730 2803880 2077440 2294660 TRUE FALSE FALSE 2285911.472 2107574.473 2097819.827 679802.3971 2166635.154 2011401.62 2331642.663 2165497.732 2257514.172 1720062.2 1.328970238 1.225289686 1.219618585 0.39521966 1.259626049 1.169377258 1.355557178 1.258964782 1.312460777 1 20.71402931 LHQLAMQQSHFPMTHGNTGFSGIESSS(ph)PEVK ddPTM_HeLa_A485_30min_R1 7 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-4;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMTHGNTGFSGIES(0.003)S(0.164)S(0.834)PEVK;LHQLAMQQSHFPMTHGNTGFSGIESS(0.21)S(0.789)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.001)S(0.249)S(0.75)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.003)S(0.11)S(0.887)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.001)S(0.181)S(0.818)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.004)S(0.115)S(0.881)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.004)S(0.227)S(0.769)PEVK ;;;;;; 344.74 2.05E-129 43016480000 5834430 6198409 4895017 5360562 7517860 6185740 9141630 9156040 4534554 8061400 TRUE FALSE FALSE 7132278.825 6923259.014 6705887.487 5653395.928 6769355.462 6509615.781 7188446.07 6910506.834 5444597.394 6051841.339 1.178530372 1.143992155 1.108073909 0.934161293 1.118561291 1.075642175 1.18781139 1.141884998 0.899659639 1 22.52894273 -1.00000003 0.050915458 0.824525776 1.567504859 0.187705838 0.086319391 1000.113741 3.848995585 13.05511926 58.04950214 0.099999993 1.00000003 0.742979083 LHQLAMQQSHFPMTHGNTGFSGIESSS(ph)PEVK ddPTM_HeLa_A486_30min_R1 5 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-6;Q15366-3;Q15366-5;Q15366-4;F8VRH0 H3BRU6;Q15366-2;Q15366-6;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMTHGNTGFSGIES(0.013)S(0.113)S(0.874)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.013)S(0.179)S(0.807)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.065)S(0.258)S(0.677)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.001)S(0.035)S(0.963)PEVK;LHQLAMQQSHFPMTHGNTGFSGIES(0.009)S(0.249)S(0.742)PEVK ;;;; 215.81 7.02E-39 50366340000 1711870 1675133 1016904 210955 1792150 1744195 2216550 2028590 1349761 1682457 TRUE FALSE FALSE 1591876.753 1542389.36 1410676.462 491113.9011 1567361.836 1529013.955 1661945.746 1566724.341 1466759.37 1261158.816 1.262233378 1.222993758 1.118555763 0.389414794 1.242794972 1.212388111 1.317792592 1.242289489 1.163025109 1 20.26631853 LHQLS(ph)GS(ph)DQLESTAHSR ddPTM_HeLa_A486_30min_R1 1 LHQLSGSDQLESTAHSR 17 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 LHQLS(1)GS(1)DQLESTAHSR 91.091 0.00082284 486610000 229140 279200 211750 31757 323120 238750 242080 258050 230990 157990 TRUE FALSE FALSE 213078.4693 257075.1752 293745.2709 73931.90091 282591.2766 209295.4524 181509.0235 199297.6482 251012.3992 118428.2757 1.799219554 2.170724633 2.480364332 0.624275753 2.386180792 1.767276027 1.532649382 1.682855273 2.11953098 1 16.85365405 -11.2582236 0.322338185 1.77E-31 1.88526581 0.194641788 0.502517624 74.53796667 3.210687864 55.70195447 0.455418359 5.52E-12 11.2582236 1.88526581 LHQLS(ph)GSDQLESTAHSR ddPTM_HeLa_A485_30min_R1 2 LHQLSGSDQLESTAHSR 17 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 LHQLS(0.811)GS(0.189)DQLESTAHSR;LHQLS(0.973)GS(0.027)DQLESTAHSR ; 304.22 4.58E-69 3243100000 749440 958920 1042790 662040 1427010 839050 1082370 1083910 966750 1016170 TRUE FALSE FALSE 916150.3425 1071057.353 1428561.415 698205.5688 1284931.874 882981.3606 851112.8074 818079.373 1160767.857 762857.5202 1.200945548 1.404007071 1.872645123 0.915250293 1.684366792 1.15746563 1.115690394 1.072388161 1.521605053 1 19.5410541 LHQLS(ph)GSDQLESTAHSR ddPTM_HeLa_A486_30min_R1 3 LHQLSGSDQLESTAHSR 17 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 LHQLS(0.996)GS(0.004)DQLESTAHSR;LHQLS(0.968)GS(0.032)DQLESTAHSR;LHQLS(0.991)GS(0.009)DQLESTAHSR ;; 299.25 1.07E-68 3830210000 1369930 1581420 1422670 172586 1948580 1339940 1530360 1695150 1328070 1031850 TRUE FALSE FALSE 1273904.981 1456102.52 1973565.924 401788.93 1704170.927 1174631.826 1147447.742 1309201.35 1443188.177 773468.0438 1.647004025 1.882563257 2.551580431 0.519464163 2.203285501 1.518655923 1.483510212 1.692637932 1.865866584 1 19.56098216 -11.48120605 0.316326771 1.48E-26 1.747993873 0.147224464 0.502859414 101.4648178 3.822835238 72.10556466 0.462043942 3.30E-12 11.48120605 1.747993873 LHQLSGS(ph)DQLESTAHSR ddPTM_HeLa_A486_30min_R1 1 LHQLSGSDQLESTAHSR 17 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 LHQLS(0.358)GS(0.642)DQLESTAHSR 101.29 0.000274 273540000 141930 97151 66454 20548 107630 125850 155840 159240 88571 133890 TRUE FALSE FALSE 131981.4399 89452.40094 92186.7685 47836.78244 94130.04179 110323.9065 116847.1837 122984.5282 96248.40559 100363.0725 1.315039851 0.891287988 0.918532745 0.476637285 0.937895178 1.099247998 1.164244784 1.225396205 0.959002183 1 16.61486902 -6.211850792 4.77730942 1.10901266 0.880673011 0.162644824 0.201474783 0.346397156 17.82171753 0.071007326 0.069745755 6.14E-07 6.211850792 -0.228339649 LHS(ph)PGATSTAELGSR ddPTM_HeLa_A485_30min_R1 1 LHSPGATSTAELGSR 15 0 Q9BV73;Q9BV73-2;H7C0P0 Q9BV73 CEP250 Centrosome-associated protein CEP250 1 0 LHS(1)PGATSTAELGSR 159.75 7.38E-10 426070000 97864 144590 130150 103000 198280 132980 184590 207200 131730 169140 TRUE FALSE FALSE 119633.5092 161498.5427 178297.901 108626.6292 178538.547 139942.6272 145150.8385 156383.8751 158167.0027 126976.5108 0.942170394 1.271877308 1.40418019 0.855486015 1.406075391 1.102114291 1.143131416 1.231596885 1.245639857 1 16.95420211 -10.73782311 6.690978374 0.996777591 1.182978727 0.089980406 0.169192879 0.007777568 0.000304753 0.156659693 0.037429844 1.83E-11 10.73782311 0.186201137 LHS(ph)PGATSTAELGSR ddPTM_HeLa_A486_30min_R1 2 LHSPGATSTAELGSR 15 0 Q9BV73;Q9BV73-2;H7C0P0 Q9BV73 CEP250 Centrosome-associated protein CEP250 1 0 LHS(1)PGATSTAELGSR;LHS(1)PGATSTAELGSR ; 218.85 1.20E-33 937430000 392700 390450 301130 87720 412880 396040 399970 441530 336650 367910 TRUE FALSE FALSE 365173.7579 359509.32 417735.6005 204216.5931 361092.7404 347180.6114 299893.2755 341003.2575 365831.0931 275782.9413 1.324134684 1.303595205 1.514726033 0.740497553 1.309336751 1.258890814 1.087425038 1.236491481 1.326518208 1 18.0731737 LHS(ph)PQTHWK ddPTM_HeLa_A485_30min_R1 4 LHSPQTHWK 9 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 LHS(1)PQTHWK;LHS(1)PQTHWK;LHS(1)PQTHWK;LHS(1)PQTHWK ;;; 179.93 2.56E-08 1306910000 665139 663780 452452 877307 891658 778425 1060150 1111670 545799 1145580 TRUE FALSE FALSE 813096.8758 741403.2969 619832.8229 925232.06 802881.3987 819182.1293 833640.2919 839031.1895 655335.8529 860007.9888 0.945452701 0.862088849 0.720729145 1.075841239 0.933574349 0.952528511 0.969340172 0.975608599 0.762011355 1 19.71399054 -5.261339654 24.99999999 0.95157351 0.844690102 0.238998558 0.089867557 13.53760565 3393261.627 0.024633521 0.039478561 5.48E-06 5.261339654 -0.106883408 LHS(ph)PQTHWK ddPTM_HeLa_A486_30min_R1 4 LHSPQTHWK 9 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 LHS(0.999)PQT(0.001)HWK;LHS(1)PQTHWK;LHS(0.999)PQT(0.001)HWK;LHS(0.958)PQT(0.042)HWK ;;; 145.31 6.76E-05 1949530000 1337120 1284110 725540 598530 1263170 1355810 1676980 1683390 1044100 1839750 TRUE FALSE FALSE 1243394.793 1182352.447 1006488.519 1393408.088 1104731.44 1188543.947 1257381.867 1300118.845 1134603.429 1379064.625 0.901621846 0.85735826 0.729834194 1.010400863 0.801073003 0.861847897 0.911764281 0.942754111 0.822734053 1 20.39525863 -13.99999987 0.17935834 1.524939168 0.844668993 0.212499317 0.074014961 204.8522051 1.969108527 38.26321165 0.227125466 1.00E-14 13.99999987 -0.680270175 LHS(ph)SNPNLSTLDFGEEK ddPTM_HeLa_A486_30min_R1 1 LHSSNPNLSTLDFGEEK 17 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LHS(0.599)S(0.401)NPNLSTLDFGEEK 264.52 6.33E-52 1510400000 1212700 1487100 1699300 407400 1966500 1228800 1309700 1263500 1296900 1249100 TRUE FALSE FALSE 1127695.992 1369256.78 2357314.469 948447.7889 1719843.233 1077203.15 981999.2074 975828.632 1409316.336 936317.2297 1.204395216 1.462385543 2.517645082 1.012955608 1.836816816 1.150468148 1.048788996 1.042198735 1.505169713 1 19.83663788 -6.281084394 23.0275167 1.145678866 1.616421136 0.247549868 0.398624711 434.6416528 509475.82 0.138960792 0.122791271 5.23E-07 6.281084394 0.47074227 LHS(ph)SNPNLSTLDFGEEKNYSDGSETSSEFSK ddPTM_HeLa_A485_30min_R1 1 LHSSNPNLSTLDFGEEKNYSDGSETSSEFSK 31 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LHS(0.539)S(0.457)NPNLS(0.002)T(0.002)LDFGEEKNYSDGSETSSEFSK 137.57 4.78E-07 256570000 61291 79684 53786 63719 141430 149870 220730 305910 81033 122770 TRUE FALSE FALSE 74924.9715 89002.35064 73683.67962 67199.80762 127348.7326 157716.9615 173569.2323 230885.0929 97295.57982 92165.69841 0.812937707 0.965677602 0.799469661 0.729119497 1.38173675 1.711232749 1.883230261 2.505108699 1.055659334 1 16.4919423 -5.961752408 3.00044641 1.736518257 0.83421125 0.45397125 0.407485602 0.209802698 3.867726038 0.133674212 0.148763458 1.09E-06 5.961752408 -0.902307007 LHS(ph)SNPNLSTLDFGEEKNYSDGSETSSEFSK ddPTM_HeLa_A486_30min_R1 1 LHSSNPNLSTLDFGEEKNYSDGSETSSEFSK 31 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LHS(0.55)S(0.436)NPNLS(0.012)T(0.002)LDFGEEKNYSDGSETSSEFSK 252.38 7.31E-53 156100000 63535 58313 36654 33545 82866 63670 100360 101970 39946 71735 TRUE FALSE FALSE 59081.5246 53692.06551 50847.41043 78094.45527 72472.17359 55815.04275 75248.8665 78753.65699 43408.55144 53772.08908 1.098739618 0.998511801 0.945609726 1.452323252 1.347765631 1.037992827 1.399403813 1.464582432 0.807269202 1 15.7145699 -5.235297637 24.83354709 1.240739871 1.012709504 0.157840807 0.207500804 1136.039474 1079187.58 0.055062584 0.09533199 5.82E-06 5.235297637 -0.228030368 LHSS(ph)NPNLSTLDFGEEK ddPTM_HeLa_A486_30min_R1 1 LHSSNPNLSTLDFGEEK 17 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LHS(0.001)S(0.994)NPNLS(0.004)T(0.001)LDFGEEK 361.67 4.12E-106 278170000 129130 130520 56225 42718 91281 114270 137070 130270 81526 135010 TRUE FALSE FALSE 120078.6538 120177.1199 77996.82576 99449.66285 79831.68582 100172.5292 102773.6362 100610.3648 88592.73932 101202.6172 1.186517277 1.187490236 0.77069969 0.982678764 0.78883025 0.989821528 1.015523502 0.994147854 0.875399686 1 16.62688707 -4.736555343 24.9672236 0.929368074 1.187004156 0.603559206 0.084228449 147.8311129 148322.957 0.021231729 0.056121175 1.83E-05 4.736555343 0.257636081 LHSS(ph)SLELGPRPLEQENER ddPTM_HeLa_A485_30min_R1 3 LHSSSLELGPRPLEQENER 19 1 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 LHS(0.001)S(0.998)S(0.001)LELGPRPLEQENER;LHS(0.005)S(0.995)S(0.001)LELGPRPLEQENER;LHS(0.019)S(0.965)S(0.016)LELGPRPLEQENER ;; 239.87 8.18E-46 1442470000 180012 278355 295654 165064 349434 235146 287876 365450 262453 231032 TRUE FALSE FALSE 220055.0484 310906.1959 405028.7178 174081.0284 314643.124 247457.881 226368.9409 275822.8145 315124.9097 173439.9742 1.268767764 1.792586728 2.335267401 1.003696115 1.814132673 1.426763825 1.30517167 1.590307054 1.816910497 1 17.40407692 -5.270007799 24.99426492 1.458638394 1.798245254 0.183570503 0.358152597 1142.530393 3332784.253 0.098959596 0.149512119 5.37E-06 5.270007799 0.33960686 LHSS(ph)SLELGPRPLEQENER ddPTM_HeLa_A486_30min_R1 4 LHSSSLELGPRPLEQENER 19 1 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 LHS(0.001)S(0.997)S(0.003)LELGPRPLEQENER;LHS(0.001)S(0.996)S(0.003)LELGPRPLEQENER;LHS(0.002)S(0.997)S(0.001)LELGPRPLEQENER;LHS(0.073)S(0.891)S(0.037)LELGPRPLEQENER ;;; 226.81 3.49E-35 1492890000 264050 351934 351028 86558 410789 282087 361469 361762 251673 250771 TRUE FALSE FALSE 245541.4586 324045.4681 486955.4425 201511.3984 359264.0132 247285.974 271025.633 279396.6898 273488.2183 187976.3094 1.306236192 1.723863338 2.590514965 1.072004228 1.911219634 1.315516699 1.441807395 1.486339905 1.454907904 1 17.52019133 -6.186718842 1.007780579 1.345739114 1.781043114 0.168319735 0.398525519 1.018649757 2.198886718 0.218266864 0.213614863 6.51E-07 6.186718842 0.435304 LHSYS(ph)SPSTK ddPTM_HeLa_A485_30min_R1 2 LHSYSSPSTK 10 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LHS(0.105)Y(0.012)S(0.534)S(0.341)PS(0.006)T(0.001)K;LHSYS(0.475)S(0.475)PS(0.05)TK ; 181.49 2.72E-10 1359200000 855570 962900 733500 891890 1140960 993180 1381680 1420330 843880 1205600 TRUE FALSE FALSE 1045888.595 1075502.779 1004852.173 940611.6923 1027362.016 1045181.369 1086472.781 1071991.841 1013238.975 905066.1074 1.155593593 1.188314058 1.110252793 1.039274021 1.135123731 1.154812185 1.200434722 1.184434851 1.1195193 1 19.78766365 -8.029922308 22.48768563 0.999999999 1.144902678 0.497948126 0.043814721 893.9239025 671816.1822 0.047492483 0.012262506 9.33E-09 8.029922308 0.144902679 LHSYS(ph)SPSTK ddPTM_HeLa_A486_30min_R1 1 LHSYSSPSTK 10 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LHSYS(0.587)S(0.413)PSTK 135.6 3.32E-05 3612800000 818490 734480 525050 172700 821480 683210 879420 834480 689630 861350 TRUE FALSE FALSE 761118.0777 676277.1299 728363.4213 402054.3278 718442.3184 598922.4966 659379.8144 644487.1206 749407.6837 645662.3536 1.178817494 1.047416078 1.128087176 0.622700589 1.112721401 0.927609444 1.021245564 0.998179803 1.16068047 1 19.30042039 -9.979191212 13.92387216 1.000000056 1.013245121 0 0.152824326 0 0 0.145211445 0.035218949 1.05E-10 9.979191212 0.013245065 LHSYSS(ph)PSTK ddPTM_HeLa_A485_30min_R1 2 LHSYSSPSTK 10 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LHSYS(0.229)S(0.771)PSTK;LHSYS(0.188)S(0.78)PS(0.032)TK ; 108.72 0.00059217 4755020000 2112900 2346400 1902650 2316200 2811000 2454500 3465500 3487400 2163300 3235800 TRUE FALSE FALSE 2582907.316 2620791.069 2606519.411 2442728.141 2531126.97 2583013.825 2725067.614 2632109.682 2597454.467 2429174.61 1.063285984 1.078881303 1.073006197 1.00557948 1.041969959 1.06332983 1.121808042 1.083540751 1.0692745 1 21.21203476 -6.528274599 24.99019169 1.078039175 1.052546773 0.019879787 0.034144012 346.7801652 1606037.895 0.013063008 0.01014326 2.96E-07 6.528274599 -0.025492402 LHSYSS(ph)PSTK ddPTM_HeLa_A486_30min_R1 3 LHSYSSPSTK 10 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LHSYS(0.23)S(0.769)PS(0.001)TK;LHSYS(0.234)S(0.766)PSTK;LHSYS(0.119)S(0.881)PSTK ;; 147.24 3.46E-06 6859800000 2838400 2683500 1708480 583290 2620400 2528800 3158800 3112900 2280600 2901900 TRUE FALSE FALSE 2639442.818 2470849.687 2370049.211 1357928.598 2291724.998 2216822.367 2368434.83 2404160.624 2478284.244 2175245.352 1.213400049 1.135894709 1.08955489 0.624264567 1.05354782 1.019113713 1.08881273 1.10523653 1.139312511 1 21.0527467 -9.130739246 14.6280511 1 1.044818751 0.008440055 0.151932032 0 0 0.155584251 0.037734723 7.40E-10 9.130739246 0.044818751 LHTDDELNWLDHGR ddPTM_HeLa_A485_30min_R1 4 LHTDDELNWLDHGR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ;;; ;;; 257.04 2.63E-41 1059698000 247634.5 320587 310138 270046 387043 292755 324737 352414 293582 370187 FALSE FALSE TRUE 302719.9402 358076.8609 424870.9521 284797.9292 348507.6399 308083.1991 255354.2871 265983.9139 352501.2145 277906.1937 1.08928821 1.288481038 1.528828654 1.024798783 1.254047761 1.10858702 0.918850651 0.957099626 1.268417986 1 18.08423846 -6.05889838 1.381208956 1.035050631 1.272900023 0.268217944 0.153354479 0.544876123 2.129326247 0.066937957 0.071586854 8.73E-07 6.05889838 0.237849392 LHTDDELNWLDHGR ddPTM_HeLa_A486_30min_R1 4 LHTDDELNWLDHGR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ;;; ;;; 287.95 1.41E-49 1195010000 441545 511006 442245 158270 638902 457965 510053 503629 410927 416300 FALSE FALSE TRUE 410594.9756 470512.0235 613494.1077 368460.5585 558764.9536 401465.9345 382432.3446 388963.6708 446546.4832 312055.7703 1.315774341 1.50778184 1.965975848 1.180752268 1.790593242 1.286519823 1.22552563 1.246455627 1.430982939 1 18.25144436 -6.42654105 8.691066246 1.24764176 1.551804842 0.323134743 0.22789156 0.433748623 35.85780248 0.077578886 0.068310414 3.75E-07 6.42654105 0.304163082 LHVAILER ddPTM_HeLa_A485_30min_R1 2 LHVAILER 8 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 119.27 0.0012383 171369000 79108 127105 133857 77160 135635 121828 113161 155247 113829 111717 FALSE FALSE TRUE 96705.30168 141968.8241 183376.2746 81375.05542 122130.7032 128206.7257 88983.22791 117172.4298 136673.4362 83868.0079 1.153065443 1.692764949 2.186486589 0.970275287 1.456225159 1.5286726 1.060991314 1.397105199 1.629625403 1 16.35583297 -5.278129866 24.99722388 1.31548666 1.678971684 0.237765892 0.31438991 1218.30807 1824648.789 0.088601565 0.131808391 5.27E-06 5.278129866 0.363485024 LHVAILER ddPTM_HeLa_A486_30min_R1 2 LHVAILER 8 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 105.57 0.0035619 154391000 117109 119564 111061 36905 144157 108448 119358 124556 103306 123622 FALSE FALSE TRUE 108900.2639 110089.3132 154066.7935 85916.70508 126075.4848 95068.78838 89493.36596 96197.31784 112260.6473 92666.24656 1.175188031 1.188019557 1.662598834 0.927162891 1.360532983 1.025926828 0.965760126 1.038105259 1.211451326 1 16.49975632 -6.016137082 1.377493972 1.048328786 1.288502325 0.219071528 0.186763062 0.639338282 2.497757115 0.07796812 0.086528814 9.64E-07 6.016137082 0.240173539 LHVGNIS(ph)PTCTNK ddPTM_HeLa_A485_30min_R1 6 LHVGNISPTCTNK 13 0 E9PB51;Q9BWF3;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2 E9PB51 RBM4 RNA-binding protein 4 1 0 LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(0.924)PT(0.076)CTNK;LHVGNIS(1)PTCTNK ;;;;; 206.43 1.15E-21 8482790000 4643450 4986280 3937070 5467050 6014280 5340000 6993770 7817840 4591720 7102140 TRUE FALSE FALSE 5676369.433 5569382.071 5393556.028 5765701.098 5415477.166 5619594.143 5499493.906 5900502.482 5513236.086 5331707.203 1.064643878 1.044577629 1.011600192 1.081398674 1.015711658 1.053995264 1.031469602 1.106681642 1.034047046 1 22.34616612 LHVGNIS(ph)PTCTNK ddPTM_HeLa_A486_30min_R1 6 LHVGNISPTCTNK 13 0 E9PB51;Q9BWF3;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2 E9PB51 RBM4 RNA-binding protein 4 1 0 LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK;LHVGNIS(1)PTCTNK ;;;;; 191.18 1.17E-17 10602240000 8692750 8535030 5183640 3408170 8862310 9213220 10589710 10278720 6859770 10973660 TRUE FALSE FALSE 8083433.114 7858683.139 7190884.231 7934391.999 7750716.442 8076586.59 7940052.551 7938479.839 7454380.387 8225784.109 0.982694538 0.955371918 0.8741883 0.964575765 0.942246519 0.981862213 0.965263912 0.965072719 0.906221254 1 22.97172178 LHVGNIS(ph)PTCTNQELR ddPTM_HeLa_A485_30min_R1 3 LHVGNISPTCTNQELR 16 0 Q9BQ04;E9PLB0;E9PM61;U3KQD5 Q9BQ04 RBM4B RNA-binding protein 4B 1 0 LHVGNIS(1)PTCTNQELR;LHVGNIS(0.998)PT(0.002)CTNQELR;LHVGNIS(1)PTCTNQELR ;; 148.52 4.41E-08 1345140000 424150 443320 454760 346517 581010 375728 541720 505970 400730 677500 TRUE FALSE FALSE 518500.7042 495162.4176 622994.6481 365446.3463 523162.6044 395400.5371 425977.0966 381880.0642 481152.8353 508611.7185 1.019443095 0.97355684 1.224892439 0.718517354 1.028609026 0.777411378 0.837529064 0.750828285 0.946012091 1 18.95620518 -5.265438089 24.99861566 0.857129143 1.062723394 0.405062589 0.114495629 323.0361512 2019517.951 0.030423363 0.047077777 5.43E-06 5.265438089 0.205594251 LHVGNIS(ph)PTCTNQELR ddPTM_HeLa_A486_30min_R1 2 LHVGNISPTCTNQELR 16 0 Q9BQ04;E9PLB0;E9PM61;U3KQD5 Q9BQ04 RBM4B RNA-binding protein 4B 1 0 LHVGNIS(0.992)PT(0.008)CTNQELR;LHVGNIS(0.993)PT(0.007)CTNQELR ; 87.496 0.00087322 830880000 639540 653060 559630 122024 596280 529820 634230 648210 623740 607370 TRUE FALSE FALSE 594711.5486 601309.1472 776333.7234 284078.0388 521489.0023 464456.1952 475538.9458 500626.7333 677806.2854 455280.5987 1.306252782 1.320744062 1.705176381 0.62396254 1.145423292 1.020153717 1.044496399 1.099600411 1.488766021 1 18.79639646 -5.244170735 24.99986873 1.06570334 1.431726332 0.385752798 0.221652538 910.2944889 1317834.328 0.059731797 0.103149931 5.70E-06 5.244170735 0.366022991 LHVLLFK ddPTM_HeLa_A485_30min_R1 1 LHVLLFK 7 0 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 0 0 91.26 0.014197 20166000 39513 39533 38516 45688 53337 34146 47711 38965 38560 69641 FALSE FALSE TRUE 48302.53053 44156.04046 52764.67118 48183.81975 48026.581 35933.83176 37517.15509 29408.77266 46298.63831 52280.78035 0.923906074 0.844594135 1.009255616 0.921635435 0.918627853 0.687323937 0.717608935 0.562515947 0.88557665 1 15.67399305 -6.249422265 23.53826213 0.739950084 0.923863504 0.281771362 0.117129157 365.1070947 715145.1526 0.037035389 0.036718606 5.63E-07 6.249422265 0.183913421 LHVLLFK ddPTM_HeLa_A486_30min_R1 2 LHVLLFK 7 0 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 0 0 ; ; 120.96 0.0023465 50302000 183979 234210 167243 76716 220590 229380 252460 234870 203668 223260 FALSE FALSE TRUE 171083.0222 215650.3466 232003.9685 178598.725 192921.5453 201081.4278 189291.8378 181395.2282 221322.1062 167354.2428 1.022280758 1.288586073 1.386304671 1.067189705 1.152773554 1.201531699 1.131084785 1.083899787 1.322476816 1 17.3525456 -5.296167672 24.99904515 1.143589965 1.238010293 0.120397539 0.116920853 1271.915432 915581.5846 0.032336986 0.047965538 5.06E-06 5.296167672 0.094420328 LHY(ph)EELPAQEEPPEPPLQIGS(ph)CSGYMELMVK ddPTM_HeLa_A485_30min_R1 1 LHYEELPAQEEPPEPPLQIGSCSGYMELMVK 31 0 H7C3T2;Q2TAZ0;Q2TAZ0-3 H7C3T2 ATG2A Autophagy-related protein 2 homolog A 2 0 LHY(0.399)EELPAQEEPPEPPLQIGS(0.601)CS(0.574)GY(0.426)MELMVK 47.191 0.025311 2205200000 161540 33816 20005 1183600 87844 107550 190150 96916 78521 815340 TRUE FALSE FALSE 197474.0157 37770.48704 27405.68198 1248257.071 79097.94292 113181.1517 149522.8991 73147.19904 94279.44446 612090.7432 0.322622124 0.061707333 0.044773887 2.039333358 0.129225844 0.184909105 0.244282242 0.119503848 0.154028542 1 19.22338602 -10.73529103 6.674892888 1.010702587 0.374261602 0.101019094 0.566354885 0.091940248 0.003646108 0.558928697 0.136891361 1.84E-11 10.73529103 -0.636440985 LHYCVSCAIHSK ddPTM_HeLa_A485_30min_R1 2 LHYCVSCAIHSK 12 0 Q5JNZ5;P62854 Q5JNZ5 RPS26P11;RPS26 Putative 40S ribosomal protein S26-like 1;40S ribosomal protein S26 0 0 ; ; 131.43 0.00025134 79260000 35885 41469 51566 35013 54656 46977 46919 56499 52098 52098 FALSE FALSE TRUE 43867.49445 46318.43882 70642.40924 36925.67153 49214.25673 49436.64308 36894.37236 42642.53166 62553.59073 39110.92739 1.121617343 1.184283828 1.806206448 0.944126718 1.258324975 1.264011016 0.943326452 1.090297124 1.599389094 1 15.25528413 LHYTPPLQS(ph)PIIDNDPLLGQS(ph)PWR ddPTM_HeLa_A485_30min_R1 1 LHYTPPLQSPIIDNDPLLGQSPWR 24 0 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2 C9J5J4 LIN9 Protein lin-9 homolog 2 0 LHY(0.052)T(0.059)PPLQS(0.889)PIIDNDPLLGQS(1)PWR 65.207 0.013209 28423000 9574 18507 16919 10545 18544 11636 14999 23945 10527 16647 TRUE FALSE FALSE 11703.70327 20671.23266 23178.04216 11121.04665 16697.69425 12245.24297 11794.34112 18072.45121 12639.67234 12497.20927 0.936505345 1.654067898 1.854657441 0.889882406 1.336113839 0.979838195 0.943757992 1.446118955 1.011399591 1 13.60931834 -5.274386787 24.9984607 1.105298418 1.498976021 0.303465961 0.272858012 921.217812 1778657.509 0.076222745 0.113863824 5.32E-06 5.274386787 0.393677603 LHYTPPLQS(ph)PIIDNDPLLGQSPWR ddPTM_HeLa_A485_30min_R1 2 LHYTPPLQSPIIDNDPLLGQSPWR 24 0 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2 C9J5J4 LIN9 Protein lin-9 homolog 1 0 LHYTPPLQS(1)PIIDNDPLLGQSPWR;LHYT(0.043)PPLQS(0.957)PIIDNDPLLGQSPWR ; 226.28 2.03E-38 236220000 73143 104251 103695 58981 131068 100071 107929 104426 87489 79691 TRUE FALSE FALSE 89413.40801 116442.2476 142056.0956 62202.98268 118018.4097 105310.5628 84869.08745 78815.35977 105047.2398 59825.5003 1.494570167 1.946364794 2.374507441 1.039740284 1.972710786 1.760295564 1.418610576 1.317420822 1.755894046 1 15.86847294 -9.3326214 0.187672417 0.548594281 1.969172615 0.278254966 0.350883919 17.38650683 0.99140597 5.981785579 1.406017977 4.65E-10 9.3326214 1.420578334 LHYTPPLQS(ph)PIIDNDPLLGQSPWR ddPTM_HeLa_A486_30min_R1 2 LHYTPPLQSPIIDNDPLLGQSPWR 24 0 C9J5J4;H7C4T7;H0Y322;Q5TKA1-3;Q5TKA1;Q5TKA1-2 C9J5J4 LIN9 Protein lin-9 homolog 1 0 LHYT(0.03)PPLQS(0.97)PIIDNDPLLGQSPWR;LHYTPPLQS(1)PIIDNDPLLGQSPWR ; 165.31 3.76E-14 205495000 129361 122564 108627 21909.6 145669 96250 113144 117512 107859 105378 TRUE FALSE FALSE 120293.4619 112851.5823 150690.2835 51006.65605 127397.8357 84375.6536 84834.17448 90757.08287 117208.305 78990.6629 1.522882041 1.428669897 1.907697416 0.645730194 1.612821453 1.068172497 1.073977244 1.148959631 1.483824805 1 16.26939451 -5.24265578 24.99977841 1.166849465 1.60064175 0.383237573 0.273377981 907.8764446 1208324.429 0.070491052 0.121833282 5.72E-06 5.24265578 0.433792285 LIALFWK ddPTM_HeLa_A485_30min_R1 1 LIALFWK 7 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 0 0 142.42 0.0036498 2903000 7792.3 8702.3 7259.4 7885.4 11466 7909.1 9515.9 9996.3 6786.5 11113 FALSE FALSE TRUE 9525.670252 9719.958285 9944.954149 8316.159435 10324.40478 8323.208246 7482.750227 7544.691751 8148.488301 8342.73362 1.141792449 1.165080743 1.192049825 0.996814691 1.237532594 0.997659595 0.896918273 0.90434288 0.976716826 1 13.02630447 -6.45319628 5.551987379 0.937514985 1.141191396 0.692007494 0.064504874 0.120625745 6.964824103 0.022516795 0.019531041 3.52E-07 6.45319628 0.203676411 LIALFWK ddPTM_HeLa_A486_30min_R1 1 LIALFWK 7 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 0 0 142.42 0.0036498 3033800 5374.4 6681 4241 2496 6079.3 6071.1 6125.2 7042.6 4445.2 7423.6 FALSE FALSE TRUE 4997.682313 6151.573228 5883.228778 5810.814141 5316.777507 5322.109408 4592.610174 5439.153719 4830.513515 5564.68224 0.898107403 1.105467116 1.057244336 1.044231079 0.955450334 0.956408502 0.825314003 0.977441925 0.86806637 1 12.44208359 -5.974932329 2.37315088 0.917543679 1.034322998 0.31701444 0.068798928 0.314934914 3.582239847 0.023243176 0.025786343 1.06E-06 5.974932329 0.116779319 LIALLEVLSQK ddPTM_HeLa_A485_30min_R1 1 LIALLEVLSQK 11 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-4;O75369-5;Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;Q14315-2;Q14315 O75369-8;Q60FE5;Q14315-2 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C 0 0 147.95 2.76E-05 0 20050 17446 16749 17633 21507 19166 20900 23539 15225 29790 FALSE FALSE TRUE 24510.05333 19486.15794 22945.15208 18596.24614 19365.68756 20169.50212 16434.54426 17766.02334 18280.51785 22363.90124 1.095965013 0.871321945 1.025990583 0.831529613 0.865935123 0.901877624 0.734869292 0.794406269 0.817411848 1 14.44888426 -1.000011798 0.496878862 0.831879655 8.404441549 0.400765133 0.083309091 99.45686597 1.068412126 0.044608708 784.7066869 0.099997284 1.000011798 7.572561894 LIALLEVLSQK ddPTM_HeLa_A486_30min_R1 1 LIALLEVLSQK 11 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-4;O75369-5;Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;Q14315-2;Q14315 O75369-8;Q60FE5;Q14315-2 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C 0 0 150.08 2.42E-05 0 34863 33182 25267 20518 36244 35390 41453 37494 30317 41199 FALSE FALSE TRUE 32419.28373 30552.53747 35051.05907 47766.94092 31697.93956 31023.94162 31081.02095 28957.43469 32944.90197 30882.50224 1.049762208 0.989315478 1.134981188 1.546731562 1.026404509 1.00457992 1.006428194 0.937664781 1.066782145 1 14.91450203 -5.968758115 24.99977796 1.001190773 1.178737706 0.267633387 0.140793354 293.1961401 234614.541 0.046815299 0.053083184 1.07E-06 5.968758115 0.177546933 LIALLEVLSQKK ddPTM_HeLa_A485_30min_R1 2 LIALLEVLSQKK 12 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 177.83 3.02E-09 59556000 36184.5 44576.9 28718 32524 54048.9 49534.8 65719 76516 27512 47927.6 FALSE FALSE TRUE 44233.61719 49789.78069 39341.98326 34300.70376 48667.60174 52128.36553 51677.59878 57750.33103 33033.40604 35980.13136 1.229390097 1.383813199 1.093436343 0.953323472 1.352624348 1.448809761 1.436281548 1.605061706 0.918101319 1 15.13491283 LIALLEVLSQKK ddPTM_HeLa_A486_30min_R1 2 LIALLEVLSQKK 12 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 167.44 2.51E-06 39158000 46970 32506.3 17866.1 18646.5 33695 30560.2 46966 37662 22164 45896 FALSE FALSE TRUE 43677.64555 29930.3824 24784.33239 43409.99434 29468.65891 26789.99324 35214.61004 29087.18476 24085.19337 34403.34287 1.269575626 0.869984714 0.720404772 1.261795823 0.856563823 0.778703202 1.023581057 0.845475536 0.700082938 1 15.07026113 LIALSIDSVEDHLAWSK ddPTM_HeLa_A485_30min_R1 3 LIALSIDSVEDHLAWSK 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ;; ;; 235.35 1.17E-41 52978300 71653.3 95313 91267 78529.8 117872 108292 121164 149564 88741 122130 FALSE FALSE TRUE 87592.32938 106459.0262 125030.4612 82819.68413 106136.2498 113962.0017 95276.32158 112883.1945 106550.5047 91685.23864 0.955359125 1.161135945 1.363692379 0.903304451 1.157615461 1.242970007 1.039167515 1.231203585 1.16213369 1 16.48440186 -5.2496021 24.99998858 1.120005853 1.160169779 0.025632465 0.134885097 4471.522031 9443709.754 0.03663459 0.062694688 5.63E-06 5.2496021 0.040163926 LIALSIDSVEDHLAWSK ddPTM_HeLa_A486_30min_R1 3 LIALSIDSVEDHLAWSK 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ;; ;; 194.58 7.48E-18 54416000 118015 123908 103635 39537.9 229552 130949 144112 140318 123678 137104 FALSE FALSE TRUE 109742.7579 114089.0788 143765.2474 92046.22933 200759.4477 114793.8438 108053.6533 108370.6545 134398.5086 102772.266 1.06782464 1.110115435 1.398872021 0.895632965 1.953439926 1.116972976 1.051389227 1.054473729 1.307731296 1 16.64909147 -6.477394415 24.99844768 1.104542212 1.287634278 0.097065261 0.273260354 1102.004884 605668.6162 0.095618665 0.084324158 3.33E-07 6.477394415 0.183092065 LIAMK(ac)TEK ddPTM_HeLa_A485_30min_R1 2 LIAMKTEK 8 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 0 1 ; LIAMK(1)TEK;LIAMK(1)TEK 171.73 0.00012036 112119000 151058 166003 121821 126915 141673 206191 271740 390630 297520 456040 FALSE TRUE FALSE 184660.331 185415.6068 166887.6573 133848.0451 127567.5387 216986.8419 213680.5291 294827.38 357229.535 342357.6208 0.539378474 0.541584576 0.487465875 0.390959736 0.372614865 0.6338017 0.624144217 0.861167861 1.043439705 1 18.3851446 -7.22859796 1.345456383 1.035339936 0.47588421 0.911932862 0.067493892 0.131079135 0.423957768 0.060121939 0.023577397 5.91E-08 7.22859796 -0.559455726 LIAMK(ac)TEK ddPTM_HeLa_A486_30min_R1 2 LIAMKTEK 8 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 0 1 ; LIAMK(1)TEK;LIAMK(1)TEK 186.3 3.73E-06 173225000 484650 496450 287250 143206 411630 491850 478020 445170 428720 678830 FALSE TRUE FALSE 450678.5377 457109.494 398480.8928 333390.8052 359999.5271 431170.5478 358414.34 343814.509 465881.7948 508846.5496 0.885686536 0.898324838 0.78310621 0.655189282 0.707481514 0.847348868 0.704366258 0.675674247 0.915564418 1 18.95687113 -9.71010802 6.236108889 1.000000002 0.779109345 0.323015361 0.09253956 2.74E-09 5.61E-10 0.093943235 0.022784581 1.95E-10 9.71010802 -0.220890657 LIDAS(ph)RVSETEYS(ph)ALEQSTK ddPTM_HeLa_A486_30min_R1 1 LIDASRVSETEYSALEQSTK 20 1 P25106 P25106 ACKR3 Atypical chemokine receptor 3 2 0 LIDAS(0.493)RVS(0.492)ET(0.083)EY(0.013)S(0.919)ALEQSTK 78.991 0.0028615 66849000 87556 70173 67238 35780 92507 89242 100570 90088 88923 129040 TRUE FALSE FALSE 81418.77654 64612.23591 93274.3543 83297.64822 80903.90947 78232.22939 75406.32228 69576.92901 96630.91724 96727.54409 0.84173311 0.667981768 0.96429983 0.861157481 0.836410251 0.808789576 0.779574453 0.719308338 0.999001041 1 16.56163915 -7.780367932 24.9593653 0.999500838 0.811865933 0.500000004 0.075817213 230.7524285 304263.6291 0.073542215 0.019116108 1.66E-08 7.780367932 -0.187634904 LIDAS(ph)RVSETEYSALEQSTK ddPTM_HeLa_A486_30min_R1 1 LIDASRVSETEYSALEQSTK 20 1 P25106 P25106 ACKR3 Atypical chemokine receptor 3 1 0 LIDAS(0.567)RVS(0.432)ET(0.001)EYSALEQSTK 220.76 1.16E-35 875470000 547370 526230 411910 185060 652920 574690 595640 600150 560550 924230 TRUE FALSE FALSE 509002.1896 484529.6183 571412.5833 430829.0324 571024.6854 503790.5908 446604.572 463508.9462 609138.9253 692796.7923 0.734706331 0.699382018 0.824791035 0.621869266 0.824231133 0.727183781 0.644640069 0.66904026 0.879246169 1 19.40207272 -7.962643884 4.088044902 0.998777329 0.719971209 0.6754764 0.063979038 0.10173983 3.832934097 0.0605544 0.015918871 1.09E-08 7.962643884 -0.278806119 LIDASRVS(ph)ETEYS(ph)ALEQSTK ddPTM_HeLa_A485_30min_R1 1 LIDASRVSETEYSALEQSTK 20 1 P25106 P25106 ACKR3 Atypical chemokine receptor 3 2 0 LIDAS(0.006)RVS(0.994)ET(0.001)EYS(1)ALEQSTK 178.15 5.21E-15 94050000 113870 121070 82719 130050 107390 124960 169750 169180 90360 215720 TRUE FALSE FALSE 139199.9887 135228.0833 113320.2003 137154.3022 96697.87453 131502.7124 133481.5258 127688.3397 108494.4232 161944.974 0.85955115 0.835024885 0.699745089 0.846919165 0.597103276 0.812020954 0.824240002 0.788467444 0.66994622 1 17.30514417 -10.1020901 8.729249086 1 0.770663982 0.410916277 0.082494082 5.26E-09 5.35E-10 0.078341706 0.019000654 7.91E-11 10.1020901 -0.229336018 LIDASRVS(ph)ETEYSALEQSTK ddPTM_HeLa_A485_30min_R1 3 LIDASRVSETEYSALEQSTK 20 1 P25106 P25106 ACKR3 Atypical chemokine receptor 3 1 0 LIDAS(0.082)RVS(0.917)ET(0.001)EYSALEQSTK;LIDAS(0.21)RVS(0.788)ET(0.002)EYSALEQSTK;LIDAS(0.392)RVS(0.602)ET(0.006)EYSALEQSTK ;; 298.5 3.04E-87 3414610000 1418250 1487000 1069540 1638500 1280790 1730490 2438250 2331930 1158770 2881880 TRUE FALSE FALSE 1733734.82 1660891.715 1465207.353 1728007.106 1153270.05 1821095.781 1917297.969 1760020.511 1391324.51 2163480.353 0.801363792 0.767694383 0.677245509 0.798716339 0.53306241 0.841743618 0.886210021 0.813513517 0.643095514 1 21.04492259 LIDASRVS(ph)ETEYSALEQSTK ddPTM_HeLa_A486_30min_R1 2 LIDASRVSETEYSALEQSTK 20 1 P25106 P25106 ACKR3 Atypical chemokine receptor 3 1 0 LIDAS(0.018)RVS(0.978)ET(0.004)EYSALEQSTK;LIDAS(0.077)RVS(0.913)ET(0.01)EYSALEQSTK ; 262.79 3.67E-59 1531110000 1650690 1495150 1156340 563530 1842050 1609600 1742370 1669310 1526720 2320310 TRUE FALSE FALSE 1534985.155 1376668.869 1604105.816 1311926.319 1611002.913 1411023.917 1306410.597 1289244.554 1659057.319 1739289.273 0.88253586 0.791512309 0.922276611 0.754288743 0.926242079 0.811264658 0.751117492 0.741247919 0.953870839 1 20.73006647 -7.92139481 6.123752271 0.999107053 0.823658771 0.482700969 0.064712413 0.154899253 8.579492907 0.061840434 0.016051931 1.20E-08 7.92139481 -0.175448283 LIDLES(ph)PTPESQK ddPTM_HeLa_A485_30min_R1 6 LIDLESPTPESQK 13 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LIDLES(0.996)PT(0.004)PESQK;LIDLES(0.895)PT(0.105)PESQK;LIDLES(0.997)PT(0.003)PESQK;LIDLES(0.993)PT(0.007)PESQK;LIDLES(0.944)PT(0.056)PESQK;LIDLES(0.792)PT(0.208)PESQK ;;;;; 320.06 1.08E-68 3759250000 2719530 2536410 2081660 3194100 3184180 2682190 3809510 3900950 2318590 3979230 TRUE FALSE FALSE 3324480.066 2833021.086 2851752.659 3368585.595 2867151.859 2822625.321 2995577.068 2944235.896 2783909.746 2987281.193 1.112878183 0.948361035 0.954631477 1.127642621 0.959786399 0.944881027 1.002777065 0.985590477 0.931920889 1 21.51040161 LIDLES(ph)PTPESQK ddPTM_HeLa_A486_30min_R1 3 LIDLESPTPESQK 13 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LIDLES(0.643)PT(0.357)PESQK;LIDLES(0.948)PT(0.052)PESQK;LIDLES(0.991)PT(0.009)PESQK ;; 308.68 3.00E-68 1756520000 1707540 1691080 1123800 751340 1777200 1818460 2217270 2125850 1318650 2190170 TRUE FALSE FALSE 1587850.264 1557072.662 1558965.456 1749157.491 1554287.004 1594116.894 1662485.594 1641840.362 1432951.644 1641737.176 0.967176894 0.948429922 0.949582844 1.065430884 0.946733147 0.970993967 1.012638087 1.000062851 0.872826457 1 20.64679176 LIDLESPT(ph)PESQK ddPTM_HeLa_A486_30min_R1 2 LIDLESPTPESQK 13 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LIDLES(0.126)PT(0.874)PESQK;LIDLES(0.392)PT(0.608)PESQK ; 270.79 1.69E-42 1397370000 1105930 1187540 711930 390220 1084910 1130720 1397590 1354220 832180 1389700 TRUE FALSE FALSE 1028410.018 1093435.005 987608.3621 908451.8806 948830.4714 991223.2627 1047898.2 1045893.668 904314.0324 1041710.075 0.987232478 1.049653864 0.94806452 0.872077465 0.910839296 0.95153468 1.005940353 1.004016083 0.868105296 1 19.99052238 -4.800968728 11.54098409 0.943760142 1.018408029 0.258773134 0.049631548 0.853188476 247.2243095 0.013602854 0.028444388 1.58E-05 4.800968728 0.074647887 LIDRENFVDIVDAK ddPTM_HeLa_A485_30min_R1 1 LIDRENFVDIVDAK 14 1 C9J6J1;C9JA07;Q9GZY4 C9J6J1 COA1 Cytochrome c oxidase assembly factor 1 homolog 0 0 65.043 0.036709 18204000 21372 38180 38292 11024 32397 48380 28288 52474 39331 15884 FALSE FALSE TRUE 26126.12767 42644.81888 52457.80426 11626.21321 29171.44093 50913.10199 22244.03771 39604.66922 47224.37093 11924.41112 2.190978439 3.576262042 4.399194536 0.97499265 2.446363231 4.269653358 1.865420227 3.321310278 3.96031053 1 13.5416304 -5.180020007 24.99937689 2.68376969 3.407549062 0.09100766 1.162927891 288.1209538 88462.44303 0.314415715 0.54458397 6.61E-06 5.180020007 0.723779373 LIEGVHPGSLVEKLPDS(ph)PALAK ddPTM_HeLa_A485_30min_R1 2 LIEGVHPGSLVEKLPDSPALAK 22 1 H0YDB2;E9PNJ4;G0XQ39;Q13586 H0YDB2 STIM1 Stromal interaction molecule 1 1 0 LIEGVHPGSLVEKLPDS(1)PALAK;LIEGVHPGSLVEKLPDS(1)PALAK ; 252.8 2.88E-59 1790790000 668300 461667 211840 643253 412781 485143 699227 867583 393460 1585350 TRUE FALSE FALSE 816961.0294 515654.9397 290208.4314 678392.2826 371683.0743 510544.3373 549831.4393 654806.9089 472423.813 1190151.421 0.686434528 0.433268348 0.243841604 0.570005018 0.312298979 0.42897427 0.461984441 0.550187898 0.396944292 1 20.18271371 -12.16703187 0.51951171 3.244670143 0.444234912 0.646123765 0.12102234 226.635741 6.901418338 567.2942356 0.054828166 6.81E-13 12.16703187 -2.800435231 LIEGVHPGSLVEKLPDS(ph)PALAK ddPTM_HeLa_A486_30min_R1 2 LIEGVHPGSLVEKLPDSPALAK 22 1 H0YDB2;E9PNJ4;G0XQ39;Q13586 H0YDB2 STIM1 Stromal interaction molecule 1 1 0 LIEGVHPGSLVEKLPDS(1)PALAK;LIEGVHPGSLVEKLPDS(1)PALAK ; 306 2.24E-88 1279660000 1596370 1185890 590570 210370 1193710 1247100 1457020 1202090 1024620 1623320 TRUE FALSE FALSE 1484472.707 1091915.757 819254.52 489751.9915 1043983.761 1093245.482 1092458.185 928400.3484 1113434.887 1216830.106 1.219950673 0.897344463 0.673269437 0.402481817 0.857953593 0.89843724 0.897790234 0.762966287 0.915029042 1 20.21469632 -7.983028355 4.801231683 0.999675591 0.815698366 0.073623672 0.194779978 0.440406397 28.74804268 0.200338131 0.052300137 1.04E-08 7.983028355 -0.183977225 LIES(ph)LSPDFCHQNK ddPTM_HeLa_A485_30min_R1 1 LIESLSPDFCHQNK 14 0 Q9H6R7;Q9H6R7-2 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 LIES(0.578)LS(0.422)PDFCHQNK 155.1 2.09E-08 249480000 259930 240060 240350 310470 363820 258810 341300 339390 274670 400450 TRUE FALSE FALSE 317750.5318 268132.9288 329265.4668 327430.1899 327596.8034 272360.8914 268378.4668 256154.0704 329793.7496 300625.1847 1.056965776 0.891917718 1.095269071 1.089164204 1.089718427 0.905981618 0.892734476 0.852071228 1.097026351 1 18.19760635 -6.26735112 24.83041969 0.936765419 1.041414255 0.237152548 0.083574166 634.5386452 2665171.981 0.029639999 0.026852786 5.40E-07 6.26735112 0.104648836 LIES(ph)PFER ddPTM_HeLa_A485_30min_R1 4 LIESPFER 8 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LIES(1)PFER;LIES(1)PFER;LIES(1)PFER;LIES(1)PFER ;;; 210.08 6.89E-07 3801810000 482930 666800 714960 446590 671590 593380 661410 703830 532840 609970 TRUE FALSE FALSE 590356.1124 744776.4596 979453.456 470986.0809 604724.1415 624448.4593 520094.3503 531214.5889 639776.1005 457915.7047 1.289224428 1.626448825 2.138938337 1.028543193 1.320601446 1.363675569 1.135786227 1.160070693 1.397148196 1 18.80472252 -5.28487522 24.9970989 1.216567076 1.67902849 0.483672391 0.228751916 668.0459005 712548.5323 0.064498846 0.095731818 5.19E-06 5.28487522 0.462461414 LIES(ph)PFER ddPTM_HeLa_A486_30min_R1 4 LIESPFER 8 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LIES(1)PFER;LIES(1)PFER;LIES(1)PFER;LIES(1)PFER ;;; 229.38 3.82E-09 3623360000 677584 740832 671570 207417 829571 613436 697632 693537 581897 711121 TRUE FALSE FALSE 630088.8606 682125.7743 931619.8893 482877.2583 725518.4697 537756.5033 523077.0948 535633.7649 632336.3005 533051.673 1.182040865 1.279661633 1.747710281 0.905873263 1.361065928 1.008826218 0.981287784 1.004843981 1.186257041 1 19.02391587 -5.285520193 24.99733525 1.070853611 1.390790127 0.422277178 0.181473009 755.4559296 784207.0802 0.050916048 0.075564526 5.18E-06 5.285520193 0.319936515 LIESLS(ph)PDFCHQNK ddPTM_HeLa_A485_30min_R1 3 LIESLSPDFCHQNK 14 0 Q9H6R7;Q9H6R7-2 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 LIESLS(1)PDFCHQNK;LIES(0.003)LS(0.997)PDFCHQNK;LIES(0.197)LS(0.803)PDFCHQNK ;; 263.04 5.60E-42 591850000 1384800 1264470 1274270 1719530 1884110 1468540 1892050 1844740 1424790 2191100 TRUE FALSE FALSE 1692843.982 1412338.767 1745675.5 1813463.57 1696521.393 1545430.484 1487798.061 1392314.623 1710732.284 1644899.094 1.029147617 0.858617268 1.061266011 1.102477092 1.031383262 0.93952905 0.904491994 0.846443789 1.040022631 1 20.64956765 -6.283209285 11.17888891 0.933874361 1.015056967 0.165264025 0.076743344 1.458227475 743.1337551 0.028018884 0.025010055 5.21E-07 6.283209285 0.081182606 LIESLS(ph)PDFCHQNK ddPTM_HeLa_A486_30min_R1 3 LIESLSPDFCHQNK 14 0 Q9H6R7;Q9H6R7-2 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 LIES(0.173)LS(0.827)PDFCHQNK;LIES(0.305)LS(0.695)PDFCHQNK;LIES(0.197)LS(0.803)PDFCHQNK ;; 197.88 7.27E-22 781150000 863760 999390 656600 396540 1106530 1011250 1120860 1170820 800100 1098060 TRUE FALSE FALSE 803214.8845 920194.6967 910853.1044 923165.16 967738.6894 886492.2566 840408.9728 904249.8448 869453.3122 823098.6288 0.975842817 1.117964074 1.106614776 1.121572953 1.175726281 1.077018264 1.021030704 1.098592335 1.056317289 1 19.65070579 -6.52135496 24.96627055 1.051747299 1.104602952 0.188585904 0.05286292 104.1768227 1706920.778 0.020125877 0.015810382 3.01E-07 6.52135496 0.052855653 LIGDAAK ddPTM_HeLa_A485_30min_R1 1 LIGDAAK 7 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;P54652;E9PPY6;E9PN25;E9PI65;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;Q53FA3;P34931;P11021 P11142;A0A0G2JIW1;Q53FA3;P11021 HSPA8;HSPA2;HSPA1B;HSPA1A;HSPA1L;HSPA5 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like;78 kDa glucose-regulated protein 0 0 99.139 0.035681 92605000 318150 425400 364060 325960 755120 397120 636160 570430 390420 615470 FALSE FALSE TRUE 388921.3699 475146.8295 498740.9438 343766.3694 679937.6014 417912.5891 500239.2191 430531.1481 468773.7129 462044.6559 0.841739786 1.028356942 1.079421518 0.744011136 1.47158417 0.904485278 1.082664225 0.931795537 1.014563651 1 18.81767277 -4.261884967 7.715383459 1.03088585 0.839939759 0.092261274 0.175660379 0.236420308 152.9492743 0.041436101 0.237586902 5.47E-05 4.261884967 -0.19094609 LIGEPDLVVSVIPNNS(ph)NENIPR ddPTM_HeLa_A485_30min_R1 1 LIGEPDLVVSVIPNNSNENIPR 22 0 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 RMI1 RecQ-mediated genome instability protein 1 1 0 LIGEPDLVVSVIPNNS(1)NENIPR 60.564 0.014675 11713000 8303.3 8837.9 6486.7 5121.8 8483.9 7306.9 8709.9 9175.3 7130.3 7547.2 TRUE FALSE FALSE 10150.34044 9871.415525 8886.400264 5401.590965 7639.213127 7689.477985 6848.958712 6925.043289 8561.285807 5665.821936 1.791503608 1.742274226 1.568422087 0.953364053 1.348297425 1.357169017 1.208819972 1.222248663 1.511040393 1 12.46806955 -5.037188442 5.498310986 1.246670901 1.74536793 0.667355374 0.156304113 0.10801418 8.81651303 0.041446471 0.076754741 9.18E-06 5.037188442 0.498697029 LIHGEDS(ph)DS(ph)EGEEEGR ddPTM_HeLa_A485_30min_R1 4 LIHGEDSDSEGEEEGR 16 0 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 LIHGEDS(1)DS(1)EGEEEGR;LIHGEDS(1)DS(1)EGEEEGR;LIHGEDS(1)DS(1)EGEEEGR;LIHGEDS(1)DS(1)EGEEEGR ;;; 228.46 7.78E-34 1422660000 977000 1064130 962840 1094910 1065800 974630 1063460 937380 968320 1344100 TRUE FALSE FALSE 1194330.279 1188570.747 1319034.583 1154722.161 959685.2097 1025660.12 836243.0833 707486.0852 1162652.942 1009040.606 1.183629551 1.177921621 1.307216553 1.144376305 0.951086808 1.016470609 0.828750675 0.701147289 1.15223603 1 19.9445528 -5.724235608 2.675984862 0.918445927 1.221328906 0.547742446 0.117188893 0.19851931 2.90619367 0.037987027 0.048943712 1.89E-06 5.724235608 0.302882979 LIHGEDS(ph)DS(ph)EGEEEGR ddPTM_HeLa_A486_30min_R1 4 LIHGEDSDSEGEEEGR 16 0 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 LIHGEDS(1)DS(1)EGEEEGR;LIHGEDS(1)DS(1)EGEEEGR;LIHGEDS(1)DS(1)EGEEEGR;LIHGEDS(1)DS(1)EGEEEGR ;;; 287.57 4.69E-59 1743140000 1257200 1515500 1099060 390767 1311150 1280400 1256870 1189620 1290520 1357240 TRUE FALSE FALSE 1169076.772 1395406.261 1524645.466 909725.3243 1146693.341 1122437.266 942387.8322 918769.4952 1402383.313 1017378.27 1.149107276 1.371570734 1.49860235 0.89418592 1.127106186 1.103264439 0.926290506 0.903075604 1.378428608 1 19.95642475 -5.262115263 24.99999412 1.044032939 1.342941181 0.424583916 0.155877184 56.57115147 2092516.49 0.042714245 0.067898905 5.47E-06 5.262115263 0.298908243 LIHGEDS(ph)DS(ph)EGEEEGRGSSGCSEAGGAGHEEGR ddPTM_HeLa_A485_30min_R1 2 LIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGR 33 1 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 LIHGEDS(1)DS(1)EGEEEGRGSSGCSEAGGAGHEEGR;LIHGEDS(1)DS(1)EGEEEGRGSSGCSEAGGAGHEEGR ; 174.69 1.94E-14 1999700000 76909 105432 126616 63259 167791 123411 130636 138494 130753 115990 TRUE FALSE FALSE 94017.14172 117761.3553 173456.5273 66714.67899 151085.1389 129872.6091 102724.5514 104528.1293 156993.9278 87075.82764 1.07971574 1.352400069 1.992016981 0.766167613 1.735098511 1.491488656 1.179713753 1.200426481 1.802956481 1 16.40998466 -10.2755143 5.350846012 0.99994718 1.397566615 0.104881031 0.350502398 0.00021041 2.85E-05 0.323318268 0.078405815 5.30E-11 10.2755143 0.397619435 LIINSLYK ddPTM_HeLa_A485_30min_R1 1 LIINSLYK 8 0 P14625;Q96GW1;A0A1W2PRR1;F8W026 P14625 HSP90B1 Endoplasmin 0 0 143.01 0.00077668 22637000 46427 50808 42063 46979 57201 54056 67242 81323 51350 71937 FALSE FALSE TRUE 56754.52598 56749.55363 57623.85409 49545.34381 51505.8676 56886.28857 52875.19738 61378.40674 61655.47399 54004.4298 1.05092353 1.050831457 1.067020878 0.917431107 0.953734125 1.053363377 0.979090004 1.136543927 1.141674381 1 15.72079013 -7.260953691 24.99998169 1.104331868 1.009983244 0.286615915 0.058720769 51.17252938 2634154.816 0.030459628 0.016228197 5.48E-08 7.260953691 -0.094348624 LILDSAR ddPTM_HeLa_A485_30min_R1 2 LILDSAR 7 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 181.2 4.52E-05 85238000 142055 198413 226691 158731 236588 203118 220071 241420 193778 226250 FALSE FALSE TRUE 173654.6447 221615.6744 310553.4343 167402.0726 213032.468 213752.9444 173051.033 182211.3665 232667.4672 169850.0388 1.022399794 1.304772586 1.828397782 0.985587485 1.254238559 1.258480398 1.018846002 1.072777891 1.36984053 1 17.37390202 LILDVFCGSQMHFVR ddPTM_HeLa_A485_30min_R1 5 LILDVFCGSQMHFVR 15 0 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ;;;; ;;;; 222.29 7.96E-23 332154000 259190 348602 396792 215613 465408 342676 405112 466176 304418 368641 FALSE FALSE TRUE 316845.9213 389367.9715 543581.8727 227391.3922 419070.3454 360617.9855 318556.5117 351845.6051 365511.9003 276745.583 1.144899651 1.406952795 1.96419349 0.821662228 1.514280159 1.303066815 1.151080744 1.271368458 1.32075062 1 18.07820077 -9.782000259 0.177141089 0.730077758 1.465139178 0.121016822 0.275543375 41.23985264 1.74661647 6.801772483 1.210878783 1.65E-10 9.782000259 0.735061421 LILDVFCGSQMHFVR ddPTM_HeLa_A486_30min_R1 6 LILDVFCGSQMHFVR 15 0 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ;;;;; ;;;;; 234.85 6.87E-31 364531000 304176 419473 462530 85945.6 584065 369795 426381 425800 426998 339667 FALSE FALSE TRUE 282854.8332 386232.4318 641634.003 200085.7003 510806.1215 324173.4527 319695.964 328854.6351 464010.5304 254612.1723 1.110924237 1.516944097 2.520044494 0.785844991 2.006212495 1.27320485 1.255619325 1.291590391 1.822420846 1 17.95794187 LILELDPTFEPIPTHMNALGSQANGSVS(ph)PDSVGGGLR ddPTM_HeLa_A486_30min_R1 1 LILELDPTFEPIPTHMNALGSQANGSVSPDSVGGGLR 37 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 LILELDPTFEPIPTHMNALGSQANGS(0.145)VS(0.854)PDSVGGGLR 221.24 1.00E-39 55923000 16174 21031 20973 5255.8 27812 19604 24261 24218 18091 18167 TRUE FALSE FALSE 15040.28612 19364.42697 29094.30728 12235.76801 24323.55962 17185.4578 18190.64119 18704.09008 19659.14245 13617.86495 1.104452583 1.421987003 2.13648082 0.898508544 1.786150744 1.261978868 1.33579245 1.373496517 1.44362883 1 13.73321291 -11.71439021 0.278696136 0.266975545 1.465653514 0.128583326 0.324848696 107.5518082 3.239592396 47.38077312 0.379050062 1.93E-12 11.71439021 1.198677969 LILEVHQFSR ddPTM_HeLa_A485_30min_R1 1 LILEVHQFSR 10 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 133.42 0.0048034 0 142280 87734 141730 151990 264380 84192 96456 96180 90409 117110 FALSE FALSE TRUE 173929.6951 97993.72812 194161.8249 160292.8288 238057.3989 88600.16293 75847.38763 72591.7042 108553.257 87916.63225 1.978348018 1.114621041 2.208476598 1.823236682 2.707762943 1.00777476 0.862719439 0.825687954 1.234729473 1 16.4238485 -6.382913112 9.637362169 0.962346063 1.92409782 0.619744845 0.383132865 0.260785509 19.48729306 0.136614753 0.120395721 4.14E-07 6.382913112 0.961751757 LILEVHQFSR ddPTM_HeLa_A486_30min_R1 2 LILEVHQFSR 10 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 141.1 0.00035814 93780000 81037 163051 163279 67528 256844 114372 135420 104110 75387 64038 FALSE FALSE TRUE 75356.72478 150130.2449 226505.0016 157208.5967 224628.2305 100261.9455 101536.4837 80406.42571 81921.60586 48002.46798 1.56985105 3.127552629 4.718611586 3.275010708 4.6795142 2.088683139 2.115234652 1.675047744 1.706612374 1 15.55082096 -6.435904376 6.626166004 1.736391281 3.511628176 0.510985095 0.865489498 0.219776561 14.0683635 0.316520925 0.277424162 3.67E-07 6.435904376 1.775236895 LILFPR ddPTM_HeLa_A485_30min_R1 2 LILFPR 6 0 P26373 P26373 RPL13 60S ribosomal protein L13 0 0 ; ; 161.85 0.0083535 58605000 55982 72971 79448 58342 85493 70396 82011 77575 70129 86382 FALSE FALSE TRUE 68435.00276 81504.32369 108839.1213 61529.07573 76981.01674 74081.82571 64488.67988 58549.60962 84203.24704 64848.55714 1.055304941 1.256840973 1.678358411 0.948811792 1.187089122 1.14238202 0.994450497 0.902866805 1.298459839 1 15.98478685 -5.31829139 24.99989186 1.068707022 1.32284025 0.306648389 0.180739009 341.6733013 150245.3418 0.050970289 0.07560118 4.81E-06 5.31829139 0.254133228 LILFPR ddPTM_HeLa_A486_30min_R1 1 LILFPR 6 0 P26373 P26373 RPL13 60S ribosomal protein L13 0 0 123.06 0.019339 23481000 16260 18132 16186 7932.1 23045 15423 17945 19805 16076 19112 FALSE FALSE TRUE 15120.25797 16695.15428 22453.65268 18466.32967 20154.48121 13520.26707 13454.9712 15295.83384 17469.48062 14326.2308 1.055424708 1.165355669 1.56731055 1.288987307 1.406823713 0.943742095 0.93918431 1.067680261 1.21940522 1 13.80637147 -6.263254686 24.994836 1.032306261 1.304075522 0.444987702 0.146616617 165.548632 2279415.199 0.053494658 0.049586726 5.45E-07 6.263254686 0.271769261 LILGLMMPPAHYDAK ddPTM_HeLa_A485_30min_R1 2 LILGLMMPPAHYDAK 15 0 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 186.49 1.56E-11 38847000 34403.6 38875 32264 40548.4 47110 42907.1 59575 64158 36340 64718 FALSE FALSE TRUE 42056.56213 43421.09308 44199.79622 42763.45642 42419.56299 45153.64941 46846.31457 48423.1499 43633.10467 48584.99365 0.865628643 0.893714084 0.909741731 0.880178286 0.873100104 0.929374402 0.96421366 0.996668853 0.89807781 1 15.56822316 -6.509594914 3.167873985 0.964120879 0.88635743 0.640859876 0.028317485 0.164367286 3.395647317 0.010910447 0.008763116 3.09E-07 6.509594914 -0.077763449 LILGLMMPPAHYDAK ddPTM_HeLa_A486_30min_R1 1 LILGLMMPPAHYDAK 15 0 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 196.58 4.86E-16 20098000 53160 61295 40308 22949 59430 60031 72967 71715 54791 80838 FALSE FALSE TRUE 49433.75852 56437.76097 55916.33709 53426.43178 51975.73524 52624.98557 54709.88483 55387.06003 59540.328 60595.63863 0.815797302 0.931383219 0.922778245 0.881687742 0.857747132 0.868461605 0.902868359 0.914043672 0.98258438 1 15.88692634 -7.699024275 1.835023804 1.002262143 0.884167271 0.656980962 0.031066612 0.215932954 1.36463114 0.02945314 0.008840001 2.00E-08 7.699024275 -0.118094872 LILIESR ddPTM_HeLa_A485_30min_R1 2 LILIESR 7 0 P62277 P62277 RPS13 40S ribosomal protein S13 0 0 ; ; 154.46 0.002736 56093000 54688 80781 84316 55601 102819 74071 82185 91485 79204 90549 FALSE FALSE TRUE 66853.15693 90227.63525 115507.9971 58638.34184 92581.97934 77949.24302 64625.50336 69048.16031 95099.5163 67976.80073 0.983470187 1.327329828 1.699226734 0.862622854 1.361964352 1.146703613 0.950699395 1.015760665 1.398999589 1 16.05275484 -5.281014345 24.98333608 1.111890837 1.335741121 0.179597978 0.226350475 1413.519957 1804058.631 0.063749119 0.094704486 5.24E-06 5.281014345 0.223850284 LILIESR ddPTM_HeLa_A486_30min_R1 2 LILIESR 7 0 P62277 P62277 RPS13 40S ribosomal protein S13 0 0 ; ; 149.4 0.0031203 51351000 75575 78767 79906 31017 104216 73398 92859 89351 78060 91392 FALSE FALSE TRUE 70277.58277 72525.21606 110847.7432 72209.14351 91144.2575 64342.90102 69624.69604 69007.72782 84826.30365 68506.84834 1.025847554 1.058656438 1.618053462 1.054042702 1.330440091 0.939218525 1.016317313 1.007311378 1.238216408 1 16.06396059 -6.263098303 24.99921962 1.039176224 1.22177074 0.199452727 0.177385209 254.386581 3833467.026 0.061100294 0.05676222 5.46E-07 6.263098303 0.182594517 LILPHVPAILQYLSK ddPTM_HeLa_A485_30min_R1 2 LILPHVPAILQYLSK 15 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 0 0 ; ; 155.98 8.52E-08 6217200 13737.1 16578.4 15474 14702.2 19445.7 14458 18436.8 19163.6 12660.6 21198.9 FALSE FALSE TRUE 16792.8705 18517.09967 21198.47653 15505.34396 17509.61783 15214.99852 14497.62707 14463.69705 15201.46629 15914.40437 1.055199435 1.163543369 1.332030784 0.974296216 1.100237082 0.956052025 0.91097516 0.908843128 0.955201712 1 13.95804554 -5.869361563 1.353759028 0.936902973 1.169236166 0.531958546 0.086054008 0.316208579 1.211153403 0.034924711 0.044348966 1.35E-06 5.869361563 0.232333194 LILPHVPAILQYLSK ddPTM_HeLa_A486_30min_R1 2 LILPHVPAILQYLSK 15 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 0 0 ; ; 164.33 3.18E-08 4603400 14602.9 13138.7 11047 5959 13643.2 13076 15645.9 14484.8 11994.1 17078.6 FALSE FALSE TRUE 13579.31212 12097.54156 15324.69425 13872.85315 11931.94264 11462.81607 11731.13033 11186.92724 13033.75825 12802.0074 1.060717409 0.944972237 1.197054007 1.083646706 0.932036849 0.895392083 0.916350848 0.873841648 1.018102696 1 13.64408243 -5.765065759 24.61862388 0.929637822 1.071514109 0.456873776 0.070201165 67.08630912 455433.3434 0.021676749 0.025561121 1.72E-06 5.765065759 0.141876287 LILS(ph)PDMQAR ddPTM_HeLa_A485_30min_R1 1 LILSPDMQAR 10 0 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 LILS(1)PDMQAR 95.401 0.00096068 0 40048 58075 55456 42920 70549 49895 54578 59885 52882 55174 TRUE FALSE FALSE 48956.53944 64866.36606 75971.48212 45264.61092 63524.89385 52507.42505 42916.96444 45198.10985 63494.93234 41420.1372 1.1819502 1.566058696 1.834167805 1.092816538 1.533671739 1.267678685 1.03613767 1.091211012 1.532948383 1 15.33804471 -6.453458569 4.996273817 1.169521991 1.449370378 0.236865356 0.235094875 0.329273882 15.64087958 0.085678501 0.073848573 3.52E-07 6.453458569 0.279848387 LIMGIGHR ddPTM_HeLa_A485_30min_R1 4 LIMGIGHR 8 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ;;; ;;; 119.89 0.0012041 218817000 175818 253687 266256 171628 277625 236042 264798 282879 212826 242286 FALSE FALSE TRUE 214928.1075 283353.4879 364755.1742 181003.6031 249983.6802 248400.7941 208221.7441 213502.4817 255538.226 181888.5591 1.181647205 1.557841181 2.005377226 0.995134625 1.374378253 1.365675748 1.144776478 1.173809297 1.404916435 1 17.47269527 -5.283039204 24.99454146 1.22644636 1.579243933 0.354942079 0.229668228 897.3656462 1038397.219 0.064649647 0.095983782 5.21E-06 5.283039204 0.352797573 LIMGIGHR ddPTM_HeLa_A486_30min_R1 4 LIMGIGHR 8 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ;;; ;;; 119.89 0.0012041 146477000 205248.5 218862.2 208178 58010.9 250388.4 190165.1 210331.9 219284.6 193872.6 228097.9 FALSE FALSE TRUE 190861.6401 201518.7622 288790.0968 135052.3069 218982.3521 166704.4634 157704.634 169358.2835 210677.6331 170980.7012 1.116275923 1.178605309 1.689021596 0.789868716 1.280743093 0.974989939 0.922353417 0.990511107 1.232172003 1 17.38347397 -5.279540169 24.99837848 1.030854701 1.313031461 0.334309206 0.194080389 957.0544768 1321752.689 0.05383936 0.080030514 5.25E-06 5.279540169 0.28217676 LINRPIIVFR ddPTM_HeLa_A485_30min_R1 2 LINRPIIVFR 10 1 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ; ; 213.53 5.08E-20 465020000 356610 469950 497470 311460 504320 450980 524070 597500 352190 478060 FALSE FALSE TRUE 435936.6642 524906.5645 681504.8545 328474.2711 454108.13 474592.6155 412098.1632 450962.1882 422871.3025 358888.44 1.214685723 1.46258978 1.89893231 0.915254532 1.265318353 1.322395938 1.148262572 1.25655256 1.178280645 1 18.45317593 -6.322573354 0.261025226 0.998941524 1.554874206 0.207777545 0.228747486 5.114965198 0.791338403 0.427597124 0.962429346 4.76E-07 6.322573354 0.555932682 LINRPIIVFR ddPTM_HeLa_A486_30min_R1 2 LINRPIIVFR 10 1 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ; ; 199.46 1.83E-14 538910000 351060 450170 448630 137705 497810 396560 489380 480890 376270 485960 FALSE FALSE TRUE 326452.5069 414496.8897 622351.5507 320584.1992 435370.0279 347636.4591 366931.9479 371401.8448 408885.3866 364272.4529 0.896176761 1.137876022 1.708478217 0.880067094 1.195176919 0.954330904 1.00730084 1.019571592 1.122471335 1 18.47465837 LIPGPLS(ph)PVAR ddPTM_HeLa_A485_30min_R1 8 LIPGPLSPVAR 11 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR ;;;;;;; 190.66 7.69E-11 10263615000 4290508 6076293 5892986 3730054 6124734 5180973 5954235 6458449 4849329 5118121 TRUE FALSE FALSE 5244916.703 6786862.61 8073046.749 3933817.405 5514933.978 5452240.735 4682064.051 4874504.256 5822544.85 3842267.627 1.36505762 1.766369048 2.101115157 1.023827018 1.435333119 1.419016389 1.218567915 1.268652975 1.51539284 1 21.87352658 -5.268202654 24.9994057 1.290997554 1.746399455 0.474947464 0.228259415 466.6244228 1724805.317 0.063255925 0.09626078 5.39E-06 5.268202654 0.455401901 LIPGPLS(ph)PVAR ddPTM_HeLa_A486_30min_R1 9 LIPGPLSPVAR 11 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR ;;;;;;;; 196.67 3.33E-12 9034695000 4026474 4246955 3866170 1298814.5 4562244 3273610 3873976 3959822 3388074 3594032 TRUE FALSE FALSE 3744238.965 3910410.819 5363254.564 3023705.794 3990004.816 2869745.282 2904666.23 3058256.973 3681754.982 2694062.994 1.389811216 1.451491976 1.990768061 1.12235898 1.481036199 1.065210906 1.078173093 1.135183914 1.366618001 1 21.36135215 -5.707495739 1.648691793 1.150365941 1.572714274 0.400646017 0.218668621 0.37254795 2.094159952 0.07675302 0.108004307 1.96E-06 5.707495739 0.422348333 LIPHKGT(ph)MPK ddPTM_HeLa_A485_30min_R1 1 LIPHKGTMPK 10 1 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 LIPHKGT(1)MPK 96.059 0.0025882 190830000 222890 190400 154820 279380 249800 213080 331040 312780 203500 382500 TRUE FALSE FALSE 272471.1115 212665.6237 212094.3606 294641.822 224929.0349 224236.5393 260310.5997 236070.2146 244340.5834 287149.7894 0.94888146 0.74060867 0.738619245 1.026091026 0.783316036 0.780904419 0.906532441 0.822115228 0.850916812 1 18.13144398 -13.99992964 0.397962042 3.533019677 0.837822318 0.217080205 0.088435353 1137.18942 8.040410367 2500.51867 0.055705688 1.00E-14 13.99992964 -2.695197359 LIPHKGT(ph)MPK ddPTM_HeLa_A486_30min_R1 1 LIPHKGTMPK 10 1 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 LIPHKGT(1)MPK 70.089 0.015604 164090000 1353200 1818400 1303400 69056 1529500 1366500 1233800 1320100 1423800 922280 TRUE FALSE FALSE 1258347.668 1674303.362 1808111.386 160765.8579 1337655.848 1197915.124 925090.1902 1019542.048 1547216.13 691335.085 1.820170414 2.421840578 2.61539075 0.232544046 1.934887838 1.732756155 1.338121282 1.47474368 2.238011876 1 19.39902562 LIPITGGNARS(ph)PEDQLGK ddPTM_HeLa_A485_30min_R1 3 LIPITGGNARSPEDQLGK 18 1 Q9UK61;Q9UK61-3;Q9UK61-2 Q9UK61 FAM208A Protein FAM208A 1 0 LIPIT(0.003)GGNARS(0.997)PEDQLGK;LIPITGGNARS(1)PEDQLGK;LIPITGGNARS(1)PEDQLGK ;; 184.2 3.93E-18 1369920000 637680 1031860 827040 756540 1643300 1457380 2084620 2843840 1005180 1263820 TRUE FALSE FALSE 779529.716 1152527.051 1132996.512 797867.8645 1479687.282 1533686.163 1639223.907 2146383.781 1206910.406 948772.9329 0.821618839 1.214755408 1.194170357 0.840947119 1.559579991 1.616494432 1.727730472 2.262273413 1.272075082 1 19.85570333 -5.86002508 5.81081842 1.654971429 1.046436509 0.390287121 0.331220679 0.197014791 9.706404035 0.100699524 0.11509586 1.38E-06 5.86002508 -0.608534921 LIPITGGNARS(ph)PEDQLGK ddPTM_HeLa_A486_30min_R1 4 LIPITGGNARSPEDQLGK 18 1 Q9UK61;Q9UK61-3;Q9UK61-2 Q9UK61 FAM208A Protein FAM208A 1 0 LIPIT(0.01)GGNARS(0.99)PEDQLGK;LIPIT(0.019)GGNARS(0.981)PEDQLGK;LIPIT(0.004)GGNARS(0.996)PEDQLGK;LIPIT(0.001)GGNARS(0.999)PEDQLGK ;;; 172.24 9.93E-13 1408660000 1318200 1052150 1018032 823767 2295340 1368090 2207640 2374540 923358 1849680 TRUE FALSE FALSE 1225800.987 968773.8021 1412241.254 1917771.207 2007437.054 1199308.966 1655265.122 1833909.078 1003395.415 1386508.089 0.884092201 0.698714858 1.018559694 1.38316626 1.447836526 0.864985192 1.193837335 1.322681846 0.723685223 1 20.4030246 -4.950489387 5.536898784 1.155314794 0.799116887 0.272583133 0.21899519 0.229150675 15.73761971 0.057872775 0.122496917 1.12E-05 4.950489387 -0.356197908 LIPNATGTGTFS(ph)PGAS(ph)PGSEAR ddPTM_HeLa_A486_30min_R1 1 LIPNATGTGTFSPGASPGSEAR 22 0 Q16512;Q16512-2;Q16512-3;K7EN76 Q16512 PKN1 Serine/threonine-protein kinase N1 2 0 LIPNATGT(0.001)GT(0.015)FS(0.983)PGAS(1)PGSEAR 140.47 3.30E-07 94143000 63745 72572 55501 21438 83184 67072 86921 75505 56755 77586 TRUE FALSE FALSE 59276.80468 66821.13042 76992.47357 49908.74742 72750.28706 58797.33858 65172.44644 58314.15976 61674.5691 58157.9606 1.019238021 1.148959312 1.323850987 0.858158486 1.250908497 1.010993817 1.120610932 1.002685774 1.060466503 1 15.82768906 -7.035068373 0.566610004 1.003721205 1.127469575 0.083122845 0.123185017 2.088460389 1.399584949 0.114242185 0.076131043 9.22E-08 7.035068373 0.12374837 LIPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LIPSPK 6 0 Q96HE9 Q96HE9 PRR11 Proline-rich protein 11 1 0 LIPS(1)PK 69.825 0.028735 130220000 394290 330400 252160 541830 422560 381110 525420 568480 300470 827140 TRUE FALSE FALSE 481998.4502 369037.4059 345444.4773 571428.8009 380488.4427 401064.3303 413159.7247 429059.3887 360771.5729 620949.2204 0.776228449 0.594311731 0.55631679 0.920250452 0.612752912 0.645889095 0.665367974 0.690973391 0.581000122 1 19.24411577 -10.21929088 5.077259813 1.000035751 0.671033385 0.481084017 0.102364933 4.04E-05 6.22E-06 0.096759015 0.023464962 6.04E-11 10.21929088 -0.329002366 LIPS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LIPSPK 6 0 Q96HE9 Q96HE9 PRR11 Proline-rich protein 11 1 0 LIPS(1)PK;LIPS(1)PK ; 69.825 0.028735 225620000 926720 893820 538680 566190 876160 961880 1293400 1132250 716840 1608030 TRUE FALSE FALSE 861761.7136 822990.448 747271.3224 1318118.934 766263.8429 843213.0253 969777.6398 874461.3918 778976.2684 1205368.821 0.714936124 0.682770645 0.619952424 1.093539928 0.635709029 0.699547732 0.804548469 0.725472052 0.646255531 1 20.20104322 -11.28522733 2.367419481 2.235228308 0.739109884 0.270691069 0.129971024 7513367.083 1147843.736 49868854.09 0.031913742 5.19E-12 11.28522733 -1.496118423 LIPTGAPGSNEQYNVGMVGTHGLETSHADS(ph)FSGSISR ddPTM_HeLa_A485_30min_R1 1 LIPTGAPGSNEQYNVGMVGTHGLETSHADSFSGSISR 37 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 LIPTGAPGSNEQYNVGMVGT(0.062)HGLET(0.062)S(0.062)HADS(0.228)FS(0.196)GS(0.196)IS(0.196)R 68.481 0.00079449 164010000 16792 30705 19342 14539 24445 23238 25346 29515 19356 20751 TRUE FALSE FALSE 20527.32247 34295.68265 26497.41069 15333.22876 22011.16997 24454.70575 19930.62004 22276.39997 23240.57166 15578.15759 1.317698986 2.201523668 1.700933536 0.984277419 1.412950783 1.569807315 1.279395199 1.429976545 1.491869081 1 13.927237 -1 0.054616133 0.334814092 3.647124547 0.229213818 0.292554199 622.4689309 2.560281975 34.13414512 168.7261705 0.1 1 3.312310455 LIPTGAPGSNEQYNVGMVGTHGLETSHADS(ph)FSGSISR ddPTM_HeLa_A486_30min_R1 1 LIPTGAPGSNEQYNVGMVGTHGLETSHADSFSGSISR 37 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 LIPTGAPGSNEQYNVGMVGT(0.005)HGLET(0.058)S(0.058)HADS(0.439)FS(0.177)GS(0.132)IS(0.132)R 126.06 1.64E-06 200570000 73012 75398 91092 19608 119620 67229 84440 77477 83082 65564 TRUE FALSE FALSE 67894.23583 69423.18789 126365.2619 45648.41493 104616.1442 58934.96951 63312.21888 59837.17841 90283.61465 49146.34765 1.38147063 1.412580816 2.571203517 0.928826192 2.128665693 1.199172926 1.288238535 1.217530524 1.837036097 1 15.58479659 -6.318540535 24.9983016 1.320731356 1.676716804 0.142822416 0.46006144 601.8731457 263491.9103 0.155661691 0.137280755 4.80E-07 6.318540535 0.355985448 LIQDSNQY(ph)QFGKT(ph)K ddPTM_HeLa_A485_30min_R1 1 LIQDSNQYQFGKTK 14 1 Q9NQX4 Q9NQX4 MYO5C Unconventional myosin-Vc 2 0 LIQDS(0.05)NQY(0.951)QFGKT(0.999)K 44.511 0.031705 252600000 241350 380920 321610 37272 442940 353470 281130 432490 373070 74754 TRUE FALSE FALSE 295037.4749 425465.2804 440586.9223 39308.07498 398839.3383 371977.1426 221064.2789 326421.1494 447941.727 56119.20355 5.25733539 7.581456143 7.850911889 0.700438932 7.107002829 6.628339661 3.939191309 5.816567748 7.981968715 1 15.77620691 LIRDFQEYVEPGEDFPAS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 LIRDFQEYVEPGEDFPASPQR 21 1 Q9Y6G9;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 LIRDFQEYVEPGEDFPAS(1)PQR 75.226 0.0021994 46821000 9125.5 28402 26624 6155 30220 34367 35777 66001 17026 12679 TRUE FALSE FALSE 11155.43599 31723.36684 36473.32552 6491.232065 27211.19069 36166.40298 28132.95168 49814.15126 20442.96203 9518.35864 1.17199156 3.332861057 3.831892335 0.681969687 2.858811243 3.799647013 2.955651572 5.233481228 2.147740257 1 13.2164971 -5.997555376 24.99261482 3.29206408 2.360105017 0.050474913 1.343246556 192.9506292 1972586.723 0.40671271 0.45842375 1.01E-06 5.997555376 -0.931959063 LIRDFQEYVEPGEDFPAS(ph)PQRR ddPTM_HeLa_A485_30min_R1 4 LIRDFQEYVEPGEDFPASPQRR 22 2 Q9Y6G9;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 LIRDFQEYVEPGEDFPAS(1)PQRR;LIRDFQEYVEPGEDFPAS(1)PQRR;LIRDFQEYVEPGEDFPAS(1)PQRR;LIRDFQEYVEPGEDFPAS(1)PQRR ;;; 154.14 3.34E-10 842900000 98640 315999 225107 54929.4 351273 452316 518410 1394270 181549 109531 TRUE FALSE FALSE 120582.1277 352952.3342 308383.4468 57930.05403 316299.0267 475998.5663 407647.4685 1052323.096 217984.219 82226.93747 1.466455293 4.292417365 3.750394412 0.704514309 3.846659458 5.788839777 4.957590311 12.79779022 2.651007392 1 16.32732348 -6.204835445 2.944207606 6.212947137 2.723072896 0.140214558 3.070158796 0.422135496 7.256799742 1.076873025 1.039778964 6.24E-07 6.204835445 -3.489874241 LIRDFQEYVEPGEDFPAS(ph)PQRR ddPTM_HeLa_A486_30min_R1 1 LIRDFQEYVEPGEDFPASPQRR 22 2 Q9Y6G9;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 LIRDFQEYVEPGEDFPAS(1)PQRR 91.583 0.00065659 88971000 62744 40093 50046 27235 127840 30676 66996 92567 24987 55519 TRUE FALSE FALSE 58345.96961 36915.88466 69425.15148 63404.45638 111805.1151 26891.50701 50232.89219 71491.51482 27152.89328 41616.68103 1.401985169 0.887045381 1.668204906 1.523534669 2.686545692 0.646171351 1.207037441 1.717857192 0.652452156 1 15.34487429 -7.527011555 0.988162509 0.915361743 1.499293068 0.126623943 0.5444294 1.231752647 2.257386357 0.516379989 0.190094693 2.97E-08 7.527011555 0.583931325 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LIRPEYAWIVQPVSGAVYDRPGASPK 26 2 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 1 0 LIRPEYAWIVQPVSGAVYDRPGAS(1)PK;LIRPEYAWIVQPVSGAVYDRPGAS(1)PK ; 197.58 2.58E-28 14885800000 862670 760590 587770 1439830 953870 848230 1312360 1263420 635020 1702530 TRUE FALSE FALSE 1054567.965 849534.3842 805210.5822 1518484.267 858899.3536 892642.0112 1031963.565 953564.264 762462.6893 1278120.604 0.825092689 0.664674665 0.629995776 1.188060237 0.672001806 0.69840202 0.807407033 0.746067516 0.596549877 1 20.28559255 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LIRPEYAWIVQPVSGAVYDRPGASPK 26 2 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 1 0 LIRPEYAWIVQPVSGAVYDRPGAS(1)PK;LIRPEYAWIVQPVSGAVYDRPGAS(1)PK ; 238.01 1.65E-49 12669200000 1960480 2100190 1109950 1315760 1832620 2253270 3038400 2648990 1533100 3900060 TRUE FALSE FALSE 1823060.476 1933763.296 1539752.365 3063155.775 1602755.711 1975284.457 2278160.183 2045872.804 1665990.342 2923459.591 0.623596947 0.661464007 0.526688438 1.047784544 0.548239393 0.675666756 0.779268573 0.69981224 0.569869461 1 21.47924522 -10.74834679 2.82709428 1.060939623 0.686355736 0.310651352 0.142216735 419306588.6 346626030.5 178606972.7 0.034134671 1.79E-11 10.74834679 -0.374583887 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PKR ddPTM_HeLa_A485_30min_R1 4 LIRPEYAWIVQPVSGAVYDRPGASPKR 27 3 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 1 0 LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR;LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR;LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR;LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR ;;; 153.86 2.33E-09 17547400000 2013980 2174510 1660810 2451620 2656720 2644280 3220950 3785640 1940400 3343200 TRUE FALSE FALSE 2461982.903 2428800.029 2275212.731 2585545.793 2392207.628 2782730.412 2532767.72 2857205.854 2329820.482 2509801.767 0.980947155 0.967725842 0.906530851 1.030179286 0.953146045 1.1087451 1.009150505 1.138418935 0.928288645 1 21.25914199 -6.233440028 24.65063349 1.0438362 0.967779076 0.237577361 0.061373992 803.2012704 707138.5785 0.019007848 0.019003942 5.84E-07 6.233440028 -0.076057124 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PKR ddPTM_HeLa_A486_30min_R1 2 LIRPEYAWIVQPVSGAVYDRPGASPKR 27 3 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 1 0 LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR;LIRPEYAWIVQPVSGAVYDRPGAS(1)PKR ; 197.75 1.96E-27 8131100000 447500 423250 283150 218687 487410 473370 621230 608260 342180 630600 TRUE FALSE FALSE 416132.5609 389710.1285 392793.263 509114.3878 426274.4929 414970.4223 465791.6833 469772.4762 371840.4379 472693.6555 0.880343021 0.82444544 0.830967919 1.077049336 0.901798634 0.877884476 0.985398636 0.993820143 0.786641482 1 18.85054598 LIS(ph)PLAS(ph)PADGVK ddPTM_HeLa_A485_30min_R1 1 LISPLASPADGVK 13 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 2 0 LIS(1)PLAS(1)PADGVK 114.31 0.0001879 0 44749 47673 38820 63857 66658 55623 66700 78200 43901 87130 TRUE FALSE FALSE 54703.26067 53247.94265 53181.13343 67345.34622 60021.29547 58535.33427 52449.00011 59021.32739 52711.52802 65410.09451 0.83631221 0.814063075 0.813041685 1.029586438 0.917615177 0.894897565 0.801848713 0.902327505 0.805862282 1 15.99722568 LIS(ph)PYK ddPTM_HeLa_A486_30min_R1 2 LISPYK 6 0 O14929-2;O14929 O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit 1 0 LIS(1)PYK;LIS(1)PYK ; 101.33 0.01164 1935540000 2303600 2576900 1492800 1188710 2335200 2802300 3312600 3101000 1923140 3498200 TRUE FALSE FALSE 2142129.536 2372697.059 2070852.139 2767376.954 2042297.441 2456580.718 2483752.443 2394969.994 2089839.324 2622227.951 0.816912021 0.904840122 0.789730023 1.055353313 0.778840543 0.936829583 0.947191659 0.91333402 0.796970882 1 21.32236167 LIS(ph)QIVSSITASLR ddPTM_HeLa_A485_30min_R1 1 LISQIVSSITASLR 14 0 F5H5D3;Q9BQE3;F8VVB9;Q9NY65;C9J2C0;Q9NY65-2;C9JDS9;Q9H853;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA8;TUBA4A;TUBA4B Tubulin alpha-1C chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 LIS(1)QIVSSITASLR 266.38 4.43E-42 124920000 43515 58022 59639 121710 122720 69193 88150 98766 57745 150060 TRUE FALSE FALSE 53194.76163 64807.16818 81701.94789 128358.7091 110501.5659 72815.83849 69316.03238 74543.48364 69333.89183 112652.8036 0.472200956 0.575282337 0.725254457 1.139418682 0.980903824 0.646373957 0.615306767 0.661709973 0.615465302 1 16.78152369 -4.734128842 3.363031397 0.795393463 0.501112653 0.295703453 0.174042588 0.333902383 7.681024033 0.051539996 0.149701037 1.84E-05 4.734128842 -0.29428081 LIS(ph)QIVSSITASLR ddPTM_HeLa_A486_30min_R1 2 LISQIVSSITASLR 14 0 F5H5D3;Q9BQE3;F8VVB9;Q9NY65;C9J2C0;Q9NY65-2;C9JDS9;Q9H853;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA8;TUBA4A;TUBA4B Tubulin alpha-1C chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 LIS(1)QIVSSITASLR;LIS(1)QIVSSITASLR ; 276.14 6.35E-49 662460000 75224 112632 97109 85115 176880 182255 137134 166350 138530 129255 TRUE FALSE FALSE 69951.18606 103706.6301 134712.2055 198152.0215 154694.0611 159770.2311 102821.6227 128475.7364 150537.8919 96888.70669 0.721974608 1.070368608 1.390380882 2.045150856 1.596616018 1.64900778 1.06123434 1.326013534 1.553719696 1 16.5640409 -4.582116091 2.608866942 1.485921177 0.747027195 0.405640209 0.283781003 0.299065994 3.761513607 0.079377111 0.352997463 2.62E-05 4.582116091 -0.738893981 LIS(ph)WYDNEFGYSNR ddPTM_HeLa_A485_30min_R1 1 LISWYDNEFGYSNR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LIS(1)WYDNEFGYSNR 93.823 0.0011346 17485000 5580 9642.1 8726.4 11843 12550 11640 10935 12684 8253.6 12177 TRUE FALSE FALSE 6821.251749 10769.65972 11954.6585 12489.9531 11300.47793 12249.4524 8598.647919 9573.229112 9910.021813 9141.498001 0.746185335 1.178106665 1.307735176 1.366291728 1.236173539 1.339983053 0.940616945 1.047227611 1.084069789 1 13.15821488 -6.770735959 24.99962391 1.02191422 1.209624261 0.210891186 0.167102176 328.299887 882828.8138 0.072492139 0.049633507 1.70E-07 6.770735959 0.18771004 LISDS(ph)VER ddPTM_HeLa_A485_30min_R1 3 LISDSVER 8 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LISDS(1)VER;LISDS(1)VER;LISDS(1)VER ;; 141.91 0.00040018 1022810000 821510 1074000 985960 793950 1064040 933050 1076410 1124680 950430 1042390 TRUE FALSE FALSE 1004252.065 1199594.957 1350707.633 837321.4781 958100.4415 981903.0552 846426.21 848850.4666 1141172.583 782541.3568 1.283321395 1.53294768 1.726052715 1.070002845 1.224344801 1.254761869 1.08163767 1.084735598 1.458290445 1 19.57780747 -5.272613441 24.99501535 1.173616646 1.515991312 0.505806753 0.156838854 571.3734309 1278091.81 0.043531772 0.065231406 5.34E-06 5.272613441 0.342374666 LISDS(ph)VER ddPTM_HeLa_A486_30min_R1 4 LISDSVER 8 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LIS(0.001)DS(0.999)VER;LISDS(1)VER;LISDS(1)VER;LIS(0.037)DS(0.963)VER ;;; 173.28 1.82E-05 1792440000 1151210 1324770 1028230 379102 1212850 1138120 1177060 1182520 1105420 1333770 TRUE FALSE FALSE 1070516.124 1219790.4 1426388.193 882568.6148 1060723.044 997710.326 882547.1383 913286.0102 1201238.696 999785.3106 1.070746002 1.220052333 1.426694489 0.882758134 1.060950819 0.99792457 0.882736653 0.913482125 1.201496644 1 19.9312588 -5.273824728 24.99765955 0.986380874 1.237253091 0.474122237 0.119522717 627.9657552 1267437.447 0.033714144 0.050405302 5.32E-06 5.273824728 0.250872217 LISLFQAMK ddPTM_HeLa_A485_30min_R1 4 LISLFQAMK 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;;; ;;; 187 3.41E-08 53589400 113836 124702 117166 115800 156650 133590 162194 169461 113808 160582 FALSE FALSE TRUE 139158.4255 139284.8141 160510.5791 122125.8608 141053.376 140584.5658 127539.9269 127900.424 136648.2217 120551.8627 1.15434488 1.155393297 1.331464944 1.013056605 1.170063845 1.166174978 1.057967285 1.060957676 1.133522275 1 16.87929442 -7.009381701 0.25121128 0.985536192 1.227941996 0.316838385 0.076183818 2.715369125 0.614395594 0.182892446 0.250419995 9.79E-08 7.009381701 0.242405804 LISLFQAMK ddPTM_HeLa_A486_30min_R1 3 LISLFQAMK 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;; ;; 180.45 6.94E-08 52835500 86109 89423 68500 35939 126951 88632 106109 98330 77338 96476 FALSE FALSE TRUE 80073.20377 82336.79581 95025.03449 83667.80826 111027.6218 77697.48498 79559.40589 75942.40553 84041.72011 72317.78165 1.107240874 1.138541503 1.313992663 1.156946554 1.535274165 1.074389773 1.10013615 1.050120784 1.162116954 1 16.1420628 LISQIVSS(ph)ITASLR ddPTM_HeLa_A485_30min_R1 1 LISQIVSSITASLR 14 0 F5H5D3;Q9BQE3;F8VVB9;Q9NY65;C9J2C0;Q9NY65-2;C9JDS9;Q9H853;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA8;TUBA4A;TUBA4B Tubulin alpha-1C chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 LISQIVS(0.022)S(0.977)ITASLR 134.85 1.19E-05 168810000 13593 19778 20697 19452 26646 21632 27003 24942 17642 24872 TRUE FALSE FALSE 16616.71595 22090.86505 28353.68157 20514.6135 23993.03068 22764.61807 21233.58846 18824.93539 21182.58758 18671.86814 0.889933232 1.183109526 1.51852409 1.098691002 1.284982869 1.219193383 1.137196787 1.008197747 1.134465359 1 14.18857866 -6.995398267 3.627107167 1.054173283 1.211621374 0.163620673 0.15114206 0.425214847 12.09015348 0.073825095 0.04426418 1.01E-07 6.995398267 0.157448091 LISQIVSSITASLR ddPTM_HeLa_A485_30min_R1 1 LISQIVSSITASLR 14 0 F5H5D3;Q9BQE3;F8VVB9;Q9NY65;C9J2C0;Q9NY65-2;C9JDS9;Q9H853;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA8;TUBA4A;TUBA4B Tubulin alpha-1C chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 360.53 2.31E-133 4018200000 1422300 1747500 1857700 1482700 2273500 1274700 1960200 2369100 1082600 1993300 FALSE FALSE TRUE 1738685.728 1951854.924 2544940.535 1563696.147 2047142.357 1341441.321 1541387.257 1788074.51 1299867.89 1496406.994 1.161906978 1.304361 1.700700776 1.044967147 1.368038485 0.896441494 1.030058843 1.194911891 0.868659325 1 20.51307118 -6.037595171 1.792995552 1.014305929 1.347395191 0.393102449 0.185611823 0.373569911 2.414480955 0.070585487 0.075722906 9.17E-07 6.037595171 0.333089262 LISQIVSSITASLR ddPTM_HeLa_A486_30min_R1 2 LISQIVSSITASLR 14 0 F5H5D3;Q9BQE3;F8VVB9;Q9NY65;C9J2C0;Q9NY65-2;C9JDS9;Q9H853;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA8;TUBA4A;TUBA4B Tubulin alpha-1C chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 297.88 3.37E-65 1901750000 373439.5 410345 343399.4 110061.3 508676 206933 399249.1 393558 345403.1 418381.5 FALSE FALSE TRUE 347263.3195 377827.7677 476372.8442 256228.2686 444873.1129 181403.7104 299352.7524 303953.4347 375342.9188 313616.0492 1.107288101 1.204746277 1.518968323 0.817012615 1.418527891 0.578426107 0.954519876 0.969189668 1.196823057 1 18.25863987 -5.756157963 1.564561425 0.962362382 1.237289894 0.164598128 0.240487452 0.647503266 3.291479444 0.086322881 0.117822119 1.75E-06 5.756157963 0.274927512 LISRIWVY(ph)NHY(ph)R ddPTM_HeLa_A485_30min_R1 1 LISRIWVYNHYR 12 1 P51587;A0A590UJU6 P51587 BRCA2 Breast cancer type 2 susceptibility protein 2 0 LIS(0.017)RIWVY(0.992)NHY(0.992)R 67.563 0.0019725 0 25043 24819 20084 22218 36642 27203 35989 40168 26768 30411 TRUE FALSE FALSE 30613.72895 27721.36615 27513.90736 23431.71308 32993.79382 28627.30702 28299.65615 30316.73502 32140.09207 22830.09737 1.340937292 1.214246514 1.20515944 1.026351868 1.445188484 1.25392838 1.239576673 1.327928415 1.407794787 1 14.47864939 -4.248104802 22.21391475 1.245583034 1.340937578 0.047067198 0.135657971 1751.467736 2917497.286 0.033057733 0.531240712 5.65E-05 4.248104802 0.095354544 LISWYDNEFGYSNR ddPTM_HeLa_A485_30min_R1 4 LISWYDNEFGYSNR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 371.33 9.08E-134 1515310000 380452 522870 537530 369684 586540 501490 588800 663950 443837 511600 FALSE FALSE TRUE 465082.2349 584015.0981 736384.7155 389878.9008 528142.0181 527747.2409 462998.0699 501115.2215 532911.0148 384067.5353 1.210938682 1.520605218 1.917331323 1.015131103 1.375127991 1.374100106 1.205512123 1.304758084 1.387545069 1 18.55100049 -13.13323632 0.105916276 1.77E-13 1.619878363 0.214190052 0.221955195 217.0692043 1.866906965 50.20784753 3.39461076 7.36E-14 13.13323632 1.619878363 LISWYDNEFGYSNR ddPTM_HeLa_A486_30min_R1 4 LISWYDNEFGYSNR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 426.36 3.01E-200 1194340000 439088 555630 487974 183695 614060 499825 526330 569670 494738 558130 FALSE FALSE TRUE 408310.1987 511599.8552 676930.6012 427651.2434 537038.8689 438161.6733 394636.667 439968.5768 537622.2882 418370.6152 0.975953339 1.222838882 1.618016602 1.022182792 1.283643854 1.047305087 0.943270518 1.051623993 1.285038358 1 18.674422 -6.268770635 24.05791717 1.061038009 1.235052484 0.159616848 0.181567036 637.0024463 2090349.682 0.064476253 0.058089833 5.39E-07 6.268770635 0.174014475 LIT(ph)SEEERS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 LITSEEERSPAK 12 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 LIT(0.5)S(0.5)EEERS(1)PAK 156.49 3.97E-08 260670000 410930 484840 247190 242060 396430 528950 629550 534820 388760 705330 TRUE FALSE FALSE 382125.929 446419.5126 342908.588 563527.913 346706.0528 463693.527 472029.9313 413053.161 422458.0298 528710.7771 0.722750406 0.844354857 0.648574992 1.065852896 0.655757491 0.877026811 0.89279423 0.781245965 0.79903427 1 19.01211921 -14 0.213439751 1.892004697 0.787821354 0.196805994 0.116502312 247.8177216 2.474779859 95.12804645 0.227770217 1.00E-14 14 -1.104183344 LITAAQER ddPTM_HeLa_A485_30min_R1 2 LITAAQER 8 0 Q7L1V2;E7EW32;Q7L1V2-2 Q7L1V2 MON1B Vacuolar fusion protein MON1 homolog B 0 0 ; ; 95.352 0.037813 192735000 300290 303970 537650 427240 797930 356710 504220 501550 467750 592920 FALSE FALSE TRUE 367088.4745 339516.6473 736549.1085 450579.0394 718485.2875 375386.784 396489.2779 378544.0761 561623.1345 445115.9559 0.824703023 0.762760002 1.654735353 1.012273394 1.614153072 0.843346052 0.890755033 0.850439242 1.26174568 1 18.76382169 LITAAQER ddPTM_HeLa_A486_30min_R1 2 LITAAQER 8 0 Q7L1V2;E7EW32;Q7L1V2-2 Q7L1V2 MON1B Vacuolar fusion protein MON1 homolog B 0 0 ; ; 99.375 0.023838 195559000 249020 534770 594460 189109 886060 501630 612810 670540 482500 402220 FALSE FALSE TRUE 231564.9839 492392.8776 824650.8322 440255.309 774922.0926 439743.9908 459478.4564 517872.6798 524323.4885 301501.494 0.768039259 1.63313578 2.735146753 1.460209378 2.570209794 1.458513472 1.523967428 1.717645485 1.739041096 1 18.20180563 LITPPPPPPS(ph)PER ddPTM_HeLa_A485_30min_R1 1 LITPPPPPPSPER 13 0 Q96HE9;J3QKY4;J3QR53 Q96HE9 PRR11 Proline-rich protein 11 1 0 LIT(0.003)PPPPPPS(0.997)PER 95.651 0.0011636 299490000 185210 188650 171910 241610 188140 204120 219620 211780 193100 291890 TRUE FALSE FALSE 226409.3255 210710.9765 235506.6628 254808.5425 169408.121 214807.4076 172696.3929 159840.6229 231853.3988 219127.1948 1.033232437 0.961592086 1.074748677 1.162833954 0.773104046 0.980286394 0.788110271 0.729442199 1.058076789 1 17.74140902 -5.76325388 24.99999997 0.874244902 1.052397298 0.36024664 0.109899306 51.50715926 709663.4359 0.033060704 0.039426501 1.72E-06 5.76325388 0.178152396 LITPPPPPPS(ph)PER ddPTM_HeLa_A486_30min_R1 2 LITPPPPPPSPER 13 0 Q96HE9;J3QKY4;J3QR53 Q96HE9 PRR11 Proline-rich protein 11 1 0 LITPPPPPPS(1)PER;LIT(0.046)PPPPPPS(0.954)PER ; 126.48 2.83E-05 427670000 140935 167282 161376 35279 174730 138889 124223 138534 138522 121587 TRUE FALSE FALSE 131056.1843 154025.9651 223865.109 82131.2949 152813.7341 121754.2873 93141.0915 106992.8324 150529.1985 91140.8238 1.437952597 1.689977758 2.456255053 0.901147164 1.676677122 1.335891889 1.021947 1.173928739 1.651611125 1 16.47580979 -5.277118874 24.99647988 1.270502262 1.84425348 0.401575427 0.340386006 826.7777543 1318059.496 0.095386085 0.142031593 5.28E-06 5.277118874 0.573751218 LITQTFSHHNQLAQK ddPTM_HeLa_A485_30min_R1 1 LITQTFSHHNQLAQK 15 0 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 0 0 121.99 3.06E-05 10241000 34869 49229 54235 29299 68561 47429 58665 69843 48994 45763 FALSE FALSE TRUE 42625.48875 54985.90331 74298.78341 30899.53018 61734.82611 49912.3091 46130.7435 52713.89474 58826.6464 34355.12631 1.24073154 1.600515243 2.162669488 0.899415415 1.796961116 1.452834394 1.342761575 1.534382213 1.712310584 1 15.06823777 -10.80416082 2.709146002 0.843814077 1.529920123 0.194889216 0.321261463 32762451.63 21932511.5 33455406.81 0.076221329 1.57E-11 10.80416082 0.686106046 LITS(ph)EEER ddPTM_HeLa_A485_30min_R1 2 LITSEEER 8 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LIT(0.307)S(0.693)EEER;LIT(0.141)S(0.859)EEER ; 131.45 0.00053543 162680000 634410 879440 886860 699160 841210 750430 797950 810370 746570 905960 TRUE FALSE FALSE 775532.3158 982282.8579 1214946.419 737353.3404 757456.1787 789721.3544 627461.4638 611625.4869 896399.7511 680120.845 1.140286056 1.444276948 1.78636845 1.08415048 1.113708225 1.161148582 0.922573493 0.89928943 1.318000702 1 19.37543158 -5.392511811 9.953301456 1.064814023 1.455395313 0.481407666 0.183466385 0.323686606 24.38214608 0.052347494 0.077665389 4.05E-06 5.392511811 0.39058129 LITS(ph)EEER ddPTM_HeLa_A486_30min_R1 2 LITSEEER 8 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LIT(0.203)S(0.797)EEER;LIT(0.041)S(0.959)EEER ; 153.1 0.00017843 342330000 889880 1105510 867440 300510 1079720 925000 903950 935820 856660 1072190 TRUE FALSE FALSE 827504.0073 1017905.361 1203335.999 699602.4669 944291.4496 810882.9047 677772.149 722754.2148 930915.9785 803706.6452 1.029609513 1.266513556 1.49723286 0.87046993 1.174920545 1.008928954 0.843307882 0.899276146 1.158278315 1 19.61630948 -5.276522894 24.99569421 0.991332452 1.264658157 0.415922177 0.147070058 762.7526904 1263996.205 0.04219489 0.06286498 5.29E-06 5.276522894 0.273325704 LITS(ph)EEERS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 LITSEEERSPAK 12 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 LIT(0.425)S(0.575)EEERS(1)PAK 116.86 0.00025078 355690000 456780 550810 276630 272390 441210 652660 748710 641780 466060 842450 TRUE FALSE FALSE 424762.0808 507161.8096 383748.5444 634137.6858 385869.3277 572141.445 561374.839 495660.704 506458.4561 631495.0366 0.672629326 0.803112899 0.607682598 1.004184751 0.611040951 0.906010993 0.888961601 0.784900395 0.801999108 1 19.26841187 -13.29840903 0.031254292 2.126307555 2.47E-06 0.287714177 0.116134725 1574.594748 4.147289162 213.2160417 91.88484032 5.03E-14 13.29840903 -2.126305084 LITS(ph)EEERS(ph)PAKR ddPTM_HeLa_A485_30min_R1 1 LITSEEERSPAKR 13 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 LIT(0.218)S(0.782)EEERS(1)PAKR 79.86 0.0034855 225650000 66316 76059 62138 108670 97234 73345 123840 112880 73236 146590 TRUE FALSE FALSE 81067.76541 84953.43842 85125.43198 114606.3669 87553.04155 77185.23079 97380.57232 85196.00301 87933.79344 110047.8108 0.736659501 0.771968455 0.773531353 1.041423415 0.795590943 0.701379066 0.884893317 0.774172629 0.79905082 1 16.74777092 -10.35586132 2.781643235 1.003035688 0.811146105 0.289250339 0.089871244 11722895.39 13605823.12 290563.8974 0.023522903 4.41E-11 10.35586132 -0.191889582 LITSEEERS(ph)PAK ddPTM_HeLa_A485_30min_R1 7 LITSEEERSPAK 12 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK ;;;;;; 218.12 3.21E-23 6775620000 5031520 3877270 3844560 8522270 6077740 4649560 7377850 5601710 4765690 10958120 TRUE FALSE FALSE 6150764.265 4330682.999 5266822.729 8987820.031 5472618.865 4893003.772 5801512.076 4227881.839 5722120.27 8226462.353 0.747680352 0.526433212 0.64022936 1.092549828 0.665245719 0.594788326 0.705225628 0.513936812 0.695574844 1 22.97184073 -10.19203598 3.76440359 1.000255948 0.684805919 0.272521701 0.153457561 101914385.4 187228289.7 352392.7244 0.041061721 6.43E-11 10.19203598 -0.315450028 LITSEEERS(ph)PAK ddPTM_HeLa_A486_30min_R1 7 LITSEEERSPAK 12 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK;LITSEEERS(1)PAK ;;;;;; 220.72 2.69E-23 9249260000 5248770 5791100 3160730 2718840 4938810 6506970 7480630 6957400 4708910 8734200 TRUE FALSE FALSE 4880858.328 5332192.145 4384649.303 6329596.923 4319338.397 5704206.199 5608897.252 5373351.899 5117082.11 6547099.47 0.745499339 0.814435792 0.669708674 0.966778793 0.659733126 0.871256993 0.856699563 0.820722508 0.781580016 1 22.64242447 -14 0.176391811 1.791500234 0.757785706 0.338686768 0.086533738 150.6776932 1.440081349 41.83067653 0.26892342 1.00E-14 14 -1.033714528 LITSEEERS(ph)PAKR ddPTM_HeLa_A485_30min_R1 7 LITSEEERSPAKR 13 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LIT(0.002)S(0.002)EEERS(0.996)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR ;;;;;; 263.04 7.68E-42 12947600000 4975610 4915376 4518932 7505730 7129440 5674310 8553080 8225660 5148111 9410890 TRUE FALSE FALSE 6082417.279 5490186.465 6190672.995 7915749.024 6419607.921 5971408.097 6725644.586 6208303.988 6181289.656 7064928.318 0.860931209 0.777104341 0.876254184 1.120428781 0.908658607 0.845218497 0.951976338 0.878749749 0.874926026 1 22.75224349 -5.001171503 24.96283885 0.935429234 0.820933106 0.291556122 0.076103007 57.79751366 1231694.298 0.020644342 0.042098514 9.97E-06 5.001171503 -0.114496127 LITSEEERS(ph)PAKR ddPTM_HeLa_A486_30min_R1 6 LITSEEERSPAKR 13 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR;LITSEEERS(1)PAKR ;;;;; 268.17 2.70E-42 11272100000 4381860 4521810 2957000 2122270 4786890 4970000 5982230 5816160 3781120 6306560 TRUE FALSE FALSE 4074714.242 4163485.307 4102029.591 4940751.814 4186473.62 4356851.931 4485412.78 4491947.334 4108870.526 4727356.327 0.861943539 0.880721701 0.867721684 1.045140555 0.885584528 0.921625456 0.948820539 0.950202824 0.869168779 1 22.17260218 LIVALMKPS(ph)R ddPTM_HeLa_A485_30min_R1 1 LIVALMKPSR 10 1 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 1 0 LIVALMKPS(1)R 70.488 0.006645 36656000 37408 54309 45324 55248 53029 63827 69520 79970 42528 78777 TRUE FALSE FALSE 45729.28054 60659.96512 62091.23369 58266.05834 47749.24656 67168.88302 54666.48407 60357.23211 51062.97951 59139.34368 0.773246331 1.025712518 1.049914149 0.985233429 0.807402375 1.135773224 0.924367446 1.02059354 0.863435005 1 15.85183061 -6.250031341 24.97853509 0.986091798 0.943632603 0.067384065 0.104879262 3105.037671 6798657.187 0.034574208 0.034275007 5.62E-07 6.250031341 -0.042459195 LIVALMKPSR ddPTM_HeLa_A485_30min_R1 4 LIVALMKPSR 10 1 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 ;;; ;;; 139.43 0.00050421 785770000 839190 1142950 1045900 869750 1365260 1092190 1365400 1475890 859760 1188270 FALSE FALSE TRUE 1025864.92 1276608.06 1432821.934 917262.2402 1229329.921 1149375.38 1073671.136 1113925.663 1032305.946 892056.1575 1.15000038 1.431084859 1.606201495 1.028256161 1.378085797 1.288456304 1.203591418 1.248716972 1.157220806 1 19.76677501 -8.059162428 0.35986532 0.97023217 1.361006292 0.302471203 0.147044842 2.090271381 0.729618511 0.285577086 0.149428525 8.73E-09 8.059162428 0.390774122 LIVALMKPSR ddPTM_HeLa_A486_30min_R1 5 LIVALMKPSR 10 1 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 ;;;; ;;;; 160.53 6.20E-06 926418000 1997760 2094080 1683820 602110 2174700 1763410 2173520 2059050 1665040 2158950 FALSE FALSE TRUE 1857727.34 1928137.474 2335840.198 1401742.509 1901928.848 1545858.403 1629682.307 1590249.264 1809367.008 1618334.868 1.147925178 1.191432943 1.443360237 0.866163448 1.175238133 0.955215409 1.007011799 0.982645369 1.118042405 1 20.62607873 -5.2670124 24.99998292 1.018044187 1.253958801 0.525738803 0.106981653 355.2038887 1593407.972 0.028894574 0.04428931 5.41E-06 5.2670124 0.235914614 LIVALMYPPYR ddPTM_HeLa_A485_30min_R1 1 LIVALMYPPYR 11 0 A0A087WUP0;B4DTF2;A0A075B765;A0A087WTN9;A0A075B752;P13928-2;P13928-3;Q5VT79-2;Q5VT79;P13928 A0A087WUP0 ANXA8L1;ANXA8;ANXA8L2 Annexin;Annexin A8;Annexin A8-like protein 2 0 0 111.82 0.0064647 5722300 8777 6947.8 7912.9 11046 10157 8330.5 11638 12021 7671.8 14122 FALSE FALSE TRUE 10729.41337 7760.284772 10840.21099 11649.41501 9145.733417 8766.672099 9151.446226 9072.830902 9211.45989 10601.6453 1.012051721 0.73198872 1.022502705 1.098830859 0.862671138 0.826916186 0.863209999 0.85579461 0.868870787 1 13.37200056 LIVENLSS(ph)R ddPTM_HeLa_A485_30min_R1 1 LIVENLSSR 9 0 Q08170;A0A0D9SEM4;Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13243-3;Q13243;B4DJK0;B4DUA4 Q08170;Q13247;Q13243-3 SRSF4;SRSF6;SRSF5 Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 5 1 0 LIVENLS(0.284)S(0.716)R 71.085 0.01421 155070000 171350 200380 214190 146820 287230 158250 240410 257560 196080 170850 TRUE FALSE FALSE 209466.2163 223812.6979 293427.7942 154840.4048 258632.3727 166535.7253 189044.4395 194393.0062 235431.4574 128260.2393 1.633134458 1.744988932 2.287753367 1.207236208 2.016465696 1.29842051 1.473913043 1.515613937 1.835576316 1 16.96871448 -5.89985164 1.170584582 1.471370417 1.819787702 0.173114142 0.334392117 0.903729762 2.622165766 0.142719531 0.181563303 1.26E-06 5.89985164 0.348417285 LIVPS(ph)PDVLK ddPTM_HeLa_A485_30min_R1 1 LIVPSPDVLK 10 0 A0A0A0MR97;Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 A0A0A0MR97 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 1 0 LIVPS(1)PDVLK 96.015 0.0023209 15357000 52777 49148 46370 61420 72536 58392 74465 79076 51212 84919 TRUE FALSE FALSE 64517.06157 54895.43107 63524.19262 64775.21908 65314.06115 61449.31483 58554.94443 59682.48701 61489.77866 63750.25612 1.012028273 0.861101342 0.99645392 1.016077786 1.024530176 0.963906948 0.918505242 0.936192114 0.964541672 1 15.96014352 -1.101830877 0.001376803 1.546397221 0.377144216 0.000933617 0.049149156 3675859.239 370.3085748 154097.9697 160456.438 0.079098659 1.101830877 -1.169253004 LIYFQLHR ddPTM_HeLa_A485_30min_R1 2 LIYFQLHR 8 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 0 ; ; 157.52 6.61E-05 105481000 58526 69509 86610 73201 103765 55011 78068 68822 72080 112011 FALSE FALSE TRUE 71544.90679 77637.4729 118650.6431 77199.78528 93433.79226 57891.2909 61388.13404 51943.29659 86545.79484 84088.71911 0.850826455 0.92328048 1.411017368 0.91807541 1.111133494 0.688454902 0.730040066 0.617720155 1.02922004 1 16.35962465 -6.256918999 24.83656233 0.784004105 1.049742944 0.265031036 0.18805906 436.8142673 2400014.102 0.062915704 0.060898203 5.53E-07 6.256918999 0.265738839 LIYFQLHR ddPTM_HeLa_A486_30min_R1 2 LIYFQLHR 8 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 0 0 ; ; 157.52 6.61E-05 105783000 86857 106254 97542 30289 122529 107887 121797 105532 114930 100872 FALSE FALSE TRUE 80768.77283 97834.04607 135312.8747 70514.32272 107160.2703 94576.99885 91322.10236 81504.66735 124892.2249 75612.99463 1.068186404 1.293878738 1.78954524 0.93256884 1.417220291 1.250803507 1.20775672 1.077918786 1.651729647 1 16.20634657 LKACSLAASEGLSSAQPNGPPEAEPRPPQS(ph)PASTASFIFSK ddPTM_HeLa_A485_30min_R1 1 LKACSLAASEGLSSAQPNGPPEAEPRPPQSPASTASFIFSK 41 2 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 LKACSLAASEGLSSAQPNGPPEAEPRPPQS(0.979)PAS(0.016)T(0.004)AS(0.001)FIFSK 195 2.63E-23 183600000 93103 122610 55472 54086 100120 137170 142920 187250 82958 64814 TRUE FALSE FALSE 113813.4411 136948.1729 75993.40118 57040.58123 90151.70126 144352.0091 112383.9745 141326.6439 99606.90966 48657.06261 2.339093958 2.814558989 1.561816458 1.172298083 1.852797855 2.966722637 2.309715556 2.904545328 2.047121308 1 15.57036161 LKACSLAASEGLSSAQPNGPPEAEPRPPQS(ph)PASTASFIFSK ddPTM_HeLa_A486_30min_R1 1 LKACSLAASEGLSSAQPNGPPEAEPRPPQSPASTASFIFSK 41 2 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 LKACSLAASEGLSSAQPNGPPEAEPRPPQS(0.43)PAS(0.131)T(0.166)AS(0.268)FIFS(0.005)K 109.52 7.69E-07 136710000 66394 35696 27755 14460 44110 32080 36144 41561 28458 57502 TRUE FALSE FALSE 61740.12346 32867.31896 38502.4793 33663.61077 38577.31249 28122.29577 27100.38891 32098.46757 30924.76235 43103.12492 1.43238161 0.76252752 0.893264221 0.781001629 0.895000364 0.652442156 0.628733739 0.744690034 0.717459869 1 15.39550485 LKAEGSEIR ddPTM_HeLa_A485_30min_R1 1 LKAEGSEIR 9 1 H7BZ94;P07237;I3L514;I3L0S0;I3NI03;I3L3U6 H7BZ94 P4HB Protein disulfide-isomerase 0 0 104.22 0.0015926 99917000 165740 244080 178900 191010 233530 270110 288820 355620 205890 262610 FALSE FALSE TRUE 202608.2912 272623.0328 245082.5547 201444.3926 210278.9332 284252.5419 227111.2476 268403.6374 247210.2345 197146.16 1.027705999 1.382847289 1.243151552 1.021802264 1.0666144 1.441836564 1.151994275 1.361444917 1.253943949 1 17.58890608 -6.208952308 24.99998863 1.258820065 1.159675928 0.080900329 0.149769708 863.9859888 411522.8778 0.048899878 0.048899867 6.18E-07 6.208952308 -0.099144136 LKAEVDNRS(ph)PQK ddPTM_HeLa_A485_30min_R1 1 LKAEVDNRSPQK 12 2 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 LKAEVDNRS(1)PQK 114.59 0.0001318 609370000 1012200 742780 550100 1539700 1164500 1067800 1636600 1361600 947680 2312200 TRUE FALSE FALSE 1237360.398 829641.6597 753604.8816 1623809.912 1048558.291 1123708.357 1286927.04 1027665.465 1137870.683 1735811.093 0.712842776 0.477956192 0.434151438 0.93547617 0.604073966 0.647367886 0.741398097 0.592037618 0.655526796 1 20.72717852 -14 0.254738128 3.216258242 0.61233809 0.394704275 0.132248816 200.2792084 1.980389084 231.8123376 0.188492036 1.00E-14 14 -2.603920152 LKAEVDNRS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 LKAEVDNRSPQK 12 2 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 LKAEVDNRS(1)PQK;LKAEVDNRS(1)PQK ; 105.31 0.00025436 1949450000 3464100 3300900 1483520 1774000 2805000 4016300 4717400 4403300 2615400 5423600 TRUE FALSE FALSE 3221284.479 3039324.662 2057978.674 4129961.653 2453170.744 3520809.741 3537056.624 3400764.713 2842104.978 4065495.258 0.792347371 0.747590261 0.506206143 1.01585696 0.603412521 0.866022346 0.870018632 0.836494571 0.699079644 1 21.95499968 -13.99999992 0.129209364 1.741983499 0.678066487 0.205585813 0.13655879 228.1848279 1.86150837 44.07690759 1.026409335 1.00E-14 13.99999992 -1.063917011 LKATVT(ph)PS(ph)PVK ddPTM_HeLa_A485_30min_R1 4 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 LKAT(0.008)VT(0.992)PS(1)PVK;LKAT(0.028)VT(0.973)PS(1)PVK;LKAT(0.226)VT(0.775)PS(0.999)PVK;LKAT(0.007)VT(0.993)PS(1)PVK ;;; 107.34 0.00057582 5931720000 10968540 6694560 4422260 16550200 8777920 8446910 14209550 10490980 6526490 20293700 TRUE FALSE FALSE 13408453.88 7477430.557 6058238 17454295.52 7903959.464 8889177.146 11173563.56 7918050.706 7836296.678 15234854.07 0.880116988 0.490810777 0.397656451 1.145681832 0.518807691 0.583476357 0.733421109 0.519732626 0.514366376 1 23.86087234 -11.05698997 2.517233822 1.501675446 0.639464631 0.202839988 0.212425166 36545380.28 8963181.782 105685086.9 0.054957621 8.77E-12 11.05698997 -0.862210815 LKATVT(ph)PS(ph)PVK ddPTM_HeLa_A486_30min_R1 6 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 LKAT(0.334)VT(0.668)PS(0.998)PVK;LKAT(0.101)VT(0.899)PS(1)PVK;LKAT(0.069)VT(0.933)PS(0.998)PVK;LKAT(0.001)VT(0.999)PS(1)PVK;LKAT(0.006)VT(0.994)PS(1)PVK;LKAT(0.002)VT(0.998)PS(1)PVK ;;;;; 142.45 9.56E-07 6971490000 14261390 12452680 4480290 6775530 7972190 14835690 18788700 15662250 8799770 24155600 TRUE FALSE FALSE 13261740.21 11465884.28 6215178.274 15773776.26 6972243.592 13005413.41 14087568.53 12096297.58 9562541.149 18106880.53 0.732414409 0.633233553 0.343249532 0.871148193 0.385060451 0.718258089 0.778022946 0.668049781 0.528116432 1 24.11003468 -6.453173545 24.99998816 0.720497903 0.592313338 0.136213181 0.180341393 381.1740494 136708.4111 0.060874999 0.053686678 3.52E-07 6.453173545 -0.128184565 LKATVT(ph)PS(ph)PVKGK ddPTM_HeLa_A485_30min_R1 2 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 LKAT(0.07)VT(0.933)PS(0.997)PVKGK;LKAT(0.017)VT(0.984)PS(0.999)PVKGK ; 80.638 0.004069 13844300000 9749200 6912700 3251800 13229300 10144400 10860500 20614400 22145300 6439800 17988400 TRUE FALSE FALSE 11917875.91 7721080.133 4454776.139 13951983.16 9134387.917 11429138.99 16209965.04 16714130.45 7732208.791 13504222.93 0.882529559 0.571753012 0.329880228 1.033157052 0.67640974 0.846338145 1.200362666 1.237696574 0.572577099 1 23.68690729 -6.021739331 1.239883733 1.009433488 0.635274421 0.241690027 0.243670426 0.603802768 1.934748601 0.110608979 0.123643016 9.51E-07 6.021739331 -0.374159067 LKATVT(ph)PS(ph)PVKGK ddPTM_HeLa_A486_30min_R1 2 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 LKAT(0.063)VT(0.954)PS(0.983)PVKGK;LKAT(0.072)VT(0.93)PS(0.998)PVKGK ; 93.754 0.0068072 16936740000 11673300 7739110 2776890 6714490 6877570 9729600 16679100 14765200 5219030 19175500 TRUE FALSE FALSE 10855061.95 7125834.738 3852176.176 15631672.05 6014921.04 8529260.875 12505812.77 11403486.28 5671419.723 14373829.99 0.755196211 0.495750593 0.267999286 1.087509179 0.418463349 0.593388184 0.870040398 0.793350575 0.39456566 1 23.77694119 -14 0.215963398 2.761003854 0.587281415 0.164648502 0.238794231 275.809634 2.757074092 211.8302737 0.474511767 1.00E-14 14 -2.173722439 LKATVT(ph)PSPVKGK ddPTM_HeLa_A486_30min_R1 1 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 LKAT(0.014)VT(0.555)PS(0.431)PVKGK 117.07 0.00016251 53249000000 55263000 34199000 16047000 20827000 32705000 35313000 57302000 57168000 22828000 67375000 TRUE FALSE FALSE 51389349.08 31488946.69 22260828.15 48486308.54 28602833.94 30956441.1 42964433.52 44152094.37 24806749.42 50503861.46 1.017533068 0.623495823 0.440774775 0.960051512 0.566349446 0.612951964 0.850715812 0.874232051 0.491185203 1 25.58989036 -6.769656504 24.99151887 0.793552593 0.693370057 0.053362229 0.202808322 645.5290222 1963287.144 0.082350929 0.05658469 1.70E-07 6.769656504 -0.100182536 LKATVTPS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 LKATVT(0.007)PS(0.992)PVK;LKAT(0.001)VT(0.043)PS(0.956)PVK ; 181.72 2.50E-09 52907300000 17606500 13311600 10007800 20216100 14181100 16458800 24667400 20922500 12919700 24655700 TRUE FALSE FALSE 21523005.18 14868275.82 13710101.68 21320454.35 12769179.89 17320557.32 19397008.48 15791224.07 15512565.28 18509487.74 1.162809338 0.803278623 0.740706705 1.151866256 0.689872138 0.935766433 1.047949503 0.853142145 0.838087228 1 24.14176163 -9.450840878 17.16778548 1 0.908618207 0.026326681 0.154636909 0 0 0.143111873 0.034709728 3.54E-10 9.450840878 -0.091381793 LKATVTPS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 LKATVT(0.004)PS(0.996)PVK 210.14 5.66E-14 5318000000 3388600 2746600 1189400 1140100 2062300 2755500 3577400 3225700 2049300 4333900 TRUE FALSE FALSE 3151076.639 2528949.413 1649967.533 2654210.417 1803627.104 2415554.426 2682296.682 2491278.527 2226934.974 3248663.231 0.969961001 0.778458471 0.50789122 0.817016178 0.555190543 0.743553349 0.825661662 0.76686266 0.685492714 1 21.63141477 -10.03920614 5.958281464 1.000000502 0.733673455 0.276882259 0.126332747 8.41E-07 1.36E-07 0.122051097 0.029601683 9.14E-11 10.03920614 -0.266327047 LKATVTPS(ph)PVKGK ddPTM_HeLa_A485_30min_R1 4 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 LKAT(0.009)VT(0.204)PS(0.787)PVKGK;LKATVT(0.034)PS(0.966)PVKGK;LKAT(0.001)VT(0.083)PS(0.916)PVKGK;LKATVT(0.05)PS(0.949)PVKGK ;;; 136.34 4.34E-06 44347370000 12421750 14273940 6204057 14340500 13443410 17591600 28137990 34435790 9330890 15690330 TRUE FALSE FALSE 15184925.43 15943153.12 8499195.857 15123885.2 12104936.9 18512668.97 22126078.57 25990358.51 11203514.04 11779019.49 1.289150209 1.353521244 0.721553765 1.283968094 1.027669316 1.571664686 1.878431273 2.206495925 0.95114148 1 23.48971612 -6.310003865 6.636880518 1.621981494 1.132775785 0.175173269 0.390185918 0.322143482 35.3187964 0.135156779 0.119817295 4.90E-07 6.310003865 -0.489205709 LKATVTPS(ph)PVKGK ddPTM_HeLa_A486_30min_R1 1 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 LKAT(0.021)VT(0.041)PS(0.938)PVKGK 101.05 0.00051159 14618000000 5687800 3916800 1585700 2275600 3719000 4630900 6365600 6327900 2768400 8557000 TRUE FALSE FALSE 5289114.592 3606418.503 2199725.507 5297711.802 3252528.342 4059586.642 4772859.552 4887175.307 3008367.141 6414271.503 0.824585394 0.562249119 0.342942376 0.825925719 0.507076811 0.632899097 0.74410002 0.761922115 0.469011507 1 22.61285399 -14 0.386129203 6.427080971 0.621084706 0.335456875 0.154211555 746.3783286 5.49319478 3399.189218 0.101147482 1.00E-14 14 -5.805996264 LKCGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_HeLa_A485_30min_R1 28 LKCGSGPVHISGQHLVAVEEDAESEDEEEEDVK 33 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 LKCGS(0.007)GPVHIS(0.007)GQHLVAVEEDAES(0.985)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.999)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.003)GPVHIS(0.055)GQHLVAVEEDAES(0.942)EDEEEEDVK;LKCGS(0.063)GPVHIS(0.063)GQHLVAVEEDAES(0.874)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.999)EDEEEEDVK;LKCGS(0.037)GPVHIS(0.037)GQHLVAVEEDAES(0.925)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.028)GPVHIS(0.156)GQHLVAVEEDAES(0.817)EDEEEEDVK;LKCGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.998)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.004)GPVHIS(0.011)GQHLVAVEEDAES(0.986)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVK;LKCGS(0.018)GPVHIS(0.018)GQHLVAVEEDAES(0.963)EDEEEEDVK;LKCGS(0.064)GPVHIS(0.064)GQHLVAVEEDAES(0.871)EDEEEEDVK;LKCGS(0.113)GPVHIS(0.113)GQHLVAVEEDAES(0.773)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.002)GPVHIS(0.002)GQHLVAVEEDAES(0.997)EDEEEEDVK;LKCGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.997)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.001)GPVHIS(0.001)GQHLVAVEEDAES(0.998)EDEEEEDVK;LKCGS(0.029)GPVHIS(0.029)GQHLVAVEEDAES(0.943)EDEEEEDVK ;;;;;;;;;;;;;;;;;;;;;;;;;;; 328.51 6.49E-128 28391357200 2518707.9 5185246.4 2509996.9 830862.1 4130785.5 4454324.3 4465540.4 6525046 3093011.6 1447197.9 TRUE FALSE FALSE 3078985.783 5791615.861 3438549.203 876249.9927 3719509.992 4687545.833 3511441.213 4924768.238 3713750.657 1086438.097 2.834018607 5.330829134 3.164974803 0.80653467 3.423582072 4.314600017 3.232067453 4.532948771 3.418280956 1 20.05117454 -5.98290397 24.9969431 3.555383617 3.070937698 0 1.359594171 1219.930683 1783711.632 0.431120872 0.48874382 1.04E-06 5.98290397 -0.484445919 LKCGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_HeLa_A486_30min_R1 11 LKCGSGPVHISGQHLVAVEEDAESEDEEEEDVK 33 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.084)GPVHIS(0.084)GQHLVAVEEDAES(0.833)EDEEEEDVK;LKCGS(0.003)GPVHIS(0.003)GQHLVAVEEDAES(0.995)EDEEEEDVK;LKCGS(0.022)GPVHIS(0.022)GQHLVAVEEDAES(0.957)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.067)GPVHIS(0.067)GQHLVAVEEDAES(0.865)EDEEEEDVK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;LKCGS(0.015)GPVHIS(0.015)GQHLVAVEEDAES(0.969)EDEEEEDVK ;;;;;;;;;; 312.88 1.26E-109 11414196000 5399644 3687520 2367428 299255.3 3547540 2351418 2724069 2982185 2355019 1298660 TRUE FALSE FALSE 5021156.839 3395307.485 3284159.524 696681.4619 3102574.454 2061323.955 2042478.124 2303206.576 2559153.943 973467.0831 5.158013996 3.487850328 3.373672906 0.715670282 3.187138535 2.117507608 2.098148113 2.365983007 2.628906501 1 19.89277267 -4.48682143 1.426938467 2.14067899 5.59886421 0.626368166 0.746736685 0.512573872 1.307935286 0.209169447 2.258625931 3.26E-05 4.48682143 3.45818522 LKCGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGK ddPTM_HeLa_A485_30min_R1 3 LKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 40 2 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 LKCGS(0.175)GPVHIS(0.175)GQHLVAVEEDAES(0.649)EDEEEEDVKLLS(0.002)IS(0.001)GK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;LKCGS(0.056)GPVHIS(0.056)GQHLVAVEEDAES(0.889)EDEEEEDVKLLSISGK ;; 213.9 2.29E-31 1383360000 224414 389210 211909 84942 747160 562580 913870 1505720 411996 204631 TRUE FALSE FALSE 274334.1201 434724.7238 290302.9574 89582.16638 672770.127 592035.8189 718614.2089 1136439.809 494679.8181 153620.2577 1.785793907 2.829865868 1.889743982 0.583140321 4.379436262 3.853891589 4.677860979 7.39772102 3.220147041 1 17.22900895 -2.807227872 18.22234365 3.318385269 2.330280514 0 1.933814364 0 0 0.47669554 0 0.001558734 2.807227872 -0.988104755 LKCGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGK ddPTM_HeLa_A486_30min_R1 2 LKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 40 2 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;LKCGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK ; 182.42 4.49E-22 437430000 315584 140716 124876 31818.5 276588 159676 260468 243427 139688 115468 TRUE FALSE FALSE 293463.1913 129565.1517 173231.3315 74075.07602 241895.754 139976.7986 195296.1515 188003.9861 151796.2683 86554.06123 3.390519025 1.496927468 2.001423492 0.855824383 2.794736036 1.617218148 2.256348791 2.172098956 1.753774071 1 16.40131389 -8.097720871 4.501546091 1.000143547 2.024208399 0.193043385 0.659271094 0.909515942 38.22963776 0.601789963 0.157326112 7.99E-09 8.097720871 1.024064853 LKDDEVAQLK(ac)K ddPTM_HeLa_A485_30min_R1 2 LKDDEVAQLKK 11 2 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 1 ; LKDDEVAQLK(1)K;LKDDEVAQLK(1)K 122.46 0.0069415 63713000 91595 76583 110739 149937 113108 117659 249960 216240 93880 368530 FALSE TRUE FALSE 111969.9918 85538.71567 151705.9643 158127.6786 101846.5704 123819.4433 196554.004 163206.8009 112720.8549 276662.2533 0.40471727 0.309181013 0.548343558 0.571554944 0.368126006 0.447547296 0.710447492 0.58991351 0.407431276 1 18.0777663 -14 0.176176602 3.034533632 0.37838289 0.66738795 0.111125226 83.363285 0.796388602 59.37051201 0.383902211 1.00E-14 14 -2.656150742 LKDDEVAQLK(ac)K ddPTM_HeLa_A486_30min_R1 2 LKDDEVAQLKK 11 2 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 1 ; LKDDEVAQLK(1)K;LKDDEVAQLK(1)K 133.71 0.0038627 72969000 140095 168062 161171 79679 175762 209033 327470 267660 148762 471840 FALSE TRUE FALSE 130275.064 154744.155 223580.7275 185496.7388 153716.291 183244.6338 245533.5424 206719.661 161656.8099 353688.1928 0.368333087 0.43751575 0.632140773 0.524464041 0.43460962 0.518096554 0.694209044 0.584468651 0.457060239 1 18.43211853 -14 0.212195796 3.295685047 0.457526028 0.720102229 0.091364466 83.13193525 0.829699568 81.3660683 0.201328261 1.00E-14 14 -2.83815902 LKDDEVAQLKK ddPTM_HeLa_A486_30min_R1 2 LKDDEVAQLKK 11 2 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 ; ; 130.1 3.58E-05 1087970000 1489310 1386020 700020 635030 1625310 1570490 1842250 1872420 1058650 1970830 FALSE FALSE TRUE 1384917.06 1276186.727 971086.4912 1478381.933 1421448.464 1376738.911 1381299.565 1446110.841 1150414.634 1477321.34 0.937451469 0.863851819 0.657329225 1.000717916 0.962179606 0.931915673 0.935002783 0.978873588 0.778716589 1 20.49455224 -5.31514959 24.99952461 0.940424584 0.823973229 0.285029517 0.088105235 407.8167218 189818.1208 0.024622935 0.036521746 4.84E-06 5.31514959 -0.116451355 LKDLEALLNSK ddPTM_HeLa_A485_30min_R1 2 LKDLEALLNSK 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 207.66 9.23E-21 0 513260 537460 354500 551130 647300 680370 864470 1021600 489930 721020 FALSE FALSE TRUE 627432.9163 600311.2717 485644.302 581236.8364 582852.5392 715993.1211 679768.9224 771050.9982 588254.4571 541282.9834 1.159158768 1.109052548 0.897209624 1.073813244 1.076798194 1.322770423 1.255847576 1.424487785 1.086778035 1 19.04602351 -6.16815387 6.104998188 1.246445239 1.055079922 0.254744384 0.127705973 0.273118658 14.713377 0.041340119 0.041355386 6.79E-07 6.16815387 -0.191365316 LKDLEALLNSK ddPTM_HeLa_A486_30min_R1 1 LKDLEALLNSK 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 134.56 0.00086055 0 316090 290230 155360 133490 416220 298620 344690 359680 206440 345280 FALSE FALSE TRUE 293933.7233 267231.1178 215519.5527 310771.4662 364013.8065 261779.3005 258444.9162 277788.7158 224334.3854 258819.6406 1.135670085 1.032499377 0.832701692 1.200725978 1.406438111 1.011435222 0.99855218 1.07329071 0.866759512 1 17.98158758 -6.492998771 24.97610779 0.99279167 1.11539529 0.177157744 0.141998262 1494.012398 1248818.693 0.054681993 0.048149528 3.21E-07 6.492998771 0.122603619 LKDLFDYS(ph)PPLHK ddPTM_HeLa_A485_30min_R1 4 LKDLFDYSPPLHK 13 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDY(0.012)S(0.988)PPLHK ;;; 129.32 1.11E-05 31921950000 424085 721882 277940 1278717 547879 592581 778588 806595 412527 908043 TRUE FALSE FALSE 518421.2452 806299.8204 380761.572 1348570.072 493330.243 623607.6249 612236.3133 608776.3116 495317.385 681684.5914 0.760500166 1.18280482 0.558559746 1.978290384 0.723692818 0.914803756 0.898122564 0.893046901 0.726607864 1 19.37874485 LKDLFDYS(ph)PPLHK ddPTM_HeLa_A486_30min_R1 10 LKDLFDYSPPLHK 13 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDYS(1)PPLHK;LKDLFDY(0.007)S(0.993)PPLHK ;;;;;;;;; 149.34 3.24E-08 2.15E+11 2621891 4011858 1236553 2229800 2432026 2979370 3351857 3286899 2109919 4427622 TRUE FALSE FALSE 2438109.98 3693943.761 1715379.438 5191087.088 2126978.621 2611805.621 2513186.926 2538543.85 2292808.478 3318916.632 0.734610191 1.112996851 0.516849209 1.564090835 0.640865336 0.786945233 0.75723111 0.764871231 0.690830392 1 21.66228096 LKDLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_HeLa_A485_30min_R1 3 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 36 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 0 LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI ;; 340.02 4.79E-130 3144450000 345703.4 214543.9 146033.9 481725 329874 329014 517343 531911 246479.6 639027 TRUE FALSE FALSE 422603.9287 239632.9428 200057.9166 508040.417 297030.5863 346240.6643 406808.4417 401458.9932 295945.7949 479729.3293 0.880921601 0.499516974 0.417022484 1.059014711 0.619162866 0.721741705 0.847995769 0.836844797 0.616901608 1 18.87186112 -14 0.114104063 1.883191325 0.573406372 0.167372968 0.182844012 282.9799423 2.121722476 58.33808195 2.067869863 1.00E-14 14 -1.309784953 LKDLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_HeLa_A486_30min_R1 3 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 36 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 0 LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI;LKDLGHPVEEEDELES(1)GDQEDEDDESEDPGKDLDHI ;; 276.89 4.13E-79 5273800000 625481 519198 263657 357021 504577 674210 944934 867278 413844 909245 TRUE FALSE FALSE 581638.0119 478054.8596 365752.0514 831162.9308 441288.2477 591032.8251 708501.5187 669817.7319 449716.3311 681564.1338 0.853387059 0.701408475 0.536636295 1.219493353 0.647464011 0.867171255 1.039522891 0.982765522 0.659829807 1 19.37848989 -5.230075665 24.99987335 0.907736144 0.697570445 0.245148864 0.175994446 1011.011613 805871.694 0.046665268 0.080816555 5.89E-06 5.230075665 -0.210165699 LKDLGNLVLRPFGLSTENFQIK ddPTM_HeLa_A485_30min_R1 1 LKDLGNLVLRPFGLSTENFQIK 22 2 Q99614;H0YB37 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 0 176.84 2.75E-23 68803000 44373 44054 33890 47537 49232 42681 58609 54858 35484 61404 FALSE FALSE TRUE 54243.62076 49205.73208 46427.32128 50133.82594 44330.28922 44915.71116 46086.70836 41403.98949 42605.31332 46097.11286 1.176724905 1.067436311 1.007163321 1.087569759 0.961671707 0.97437146 0.999774292 0.898190514 0.924251231 1 15.49238877 -1.000000005 0.356531556 0.942735626 3.727770448 0.712110923 0.041831942 33.33566571 0.467420837 0.034935093 62.79304731 0.099999999 1.000000005 2.785034823 LKDLGNLVLRPFGLSTENFQIK ddPTM_HeLa_A486_30min_R1 1 LKDLGNLVLRPFGLSTENFQIK 22 2 Q99614;H0YB37 Q99614 TTC1 Tetratricopeptide repeat protein 1 0 0 170.04 1.76E-17 38816000 49594 43167 28745 21829 43231 45727 63238 54480 39103 67098 FALSE FALSE TRUE 46117.7167 39746.28971 39875.83382 50819.01518 37808.56487 40085.66766 47415.18354 42076.09329 42492.47952 50296.22407 0.916922047 0.790244008 0.792819631 1.010394242 0.75171776 0.796991591 0.942718552 0.836565648 0.844844326 1 15.61816247 -11.00036932 2.38600011 1.148183102 0.852091318 0.248416443 0.076301215 20768492.73 8634365.239 16908301.02 0.018648685 9.99E-12 11.00036932 -0.296091784 LKDLYIRPNIAQK(ac)R ddPTM_HeLa_A485_30min_R1 2 LKDLYIRPNIAQKR 14 3 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 1 ; LKDLYIRPNIAQK(1)R;LKDLYIRPNIAQK(1)R 187.37 1.29E-10 267660000 215186 307351 257150 183941 331590 322754 367220 456300 259230 293653 FALSE TRUE FALSE 263053.3833 343293.0259 352280.4859 193989.2311 298575.7353 339652.9004 288760.4471 344391.7095 311255.0832 220450.7114 1.193252595 1.557232561 1.59800113 0.879966455 1.354387715 1.540720364 1.309863984 1.562216367 1.411903283 1 17.75009661 -10.76334213 2.480687246 0.900877875 1.383088885 0.230693442 0.207276035 23034285.24 15689133.78 13890141.07 0.052821361 1.72E-11 10.76334213 0.48221101 LKDLYIRPNIAQK(ac)R ddPTM_HeLa_A486_30min_R1 1 LKDLYIRPNIAQKR 14 3 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 1 LKDLYIRPNIAQK(1)R 211.75 1.49E-17 133200000 143000 145770 97272 42212 152530 122610 148950 149800 102690 157260 FALSE TRUE FALSE 132976.4385 134218.6543 134938.3234 98271.66928 133398.2651 107483.6248 111681.1346 115693.8101 111591.2519 117881.0724 1.128055893 1.138593767 1.144698811 0.833650961 1.131634302 0.911797141 0.947405146 0.981445178 0.946642659 1 16.84697256 -5.22734406 24.7247436 0.967916991 1.137263992 0.554082315 0.07085737 395.4662297 286777.8521 0.018069197 0.031294515 5.92E-06 5.22734406 0.169347001 LKDRLPS(ph)IVVEPTEGEVESGELR ddPTM_HeLa_A486_30min_R1 2 LKDRLPSIVVEPTEGEVESGELR 23 2 B5MBX5;B5MCP4;Q53QV2 B5MBX5 LBH Protein LBH 1 0 LKDRLPS(1)IVVEPTEGEVESGELR;LKDRLPS(0.999)IVVEPT(0.001)EGEVESGELR ; 126.36 1.55E-06 134485000 86082 100149 80453 35153 114950 119666 148070 209178 104315 134259 TRUE FALSE FALSE 80048.09633 92212.8285 111606.5562 81837.96053 100531.8991 104902.8256 111021.3199 161552.7357 113357.1082 100639.6725 0.795393052 0.916267176 1.108971774 0.81317793 0.998929116 1.042360562 1.103156609 1.605258957 1.126366028 1 16.61883961 -6.801856096 2.459452278 1.280705075 0.938294347 0.372614683 0.170691726 0.264574083 3.265066778 0.078797573 0.05085499 1.58E-07 6.801856096 -0.342410728 LKDVLLQVDDERR ddPTM_HeLa_A485_30min_R1 2 LKDVLLQVDDERR 13 2 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 225.09 1.28E-27 705090000 516470 680390 550330 480760 749770 710760 825280 986420 565950 738420 FALSE FALSE TRUE 631356.9697 759955.6919 753919.9681 507022.7015 675120.2662 747974.2946 648952.1861 744498.9484 679530.9738 554345.4836 1.138923268 1.370906257 1.360018238 0.914633052 1.217869156 1.349292664 1.170663792 1.343023386 1.22582576 1 19.08042586 -8.06454588 20.92989634 0.999999999 1.235881895 0.217114319 0.13234892 7116.094672 2307491.752 0.129960227 0.033555586 8.62E-09 8.06454588 0.235881896 LKDVLLQVDDERR ddPTM_HeLa_A486_30min_R1 2 LKDVLLQVDDERR 13 2 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 202.25 1.37E-21 615520000 535440 524380 366580 193729 627150 507040 605280 594410 466300 605690 FALSE FALSE TRUE 497908.421 482826.219 508529.5934 451010.9025 548486.9991 444486.56 453832.542 459075.8189 506719.2594 454021.2816 1.096663177 1.063444025 1.120056733 0.99336952 1.208064514 0.978999395 0.999584293 1.01113282 1.1160694 1 18.7924004 LKEDILENEDEQNS(ph)PPK ddPTM_HeLa_A485_30min_R1 4 LKEDILENEDEQNSPPK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK ;;; 168.78 2.27E-12 2297310000 1843270 1168700 743240 4038120 1705300 1354450 2599660 1897540 1261160 5596500 TRUE FALSE FALSE 2253299.052 1305369.299 1018195.405 4258712.271 1535514.344 1425366.908 2044221.404 1432165.34 1514263.244 4201395.546 0.536321569 0.310698977 0.242346952 1.013642306 0.365477215 0.339260346 0.486557712 0.340878483 0.36041911 1 22.00243719 -10.39835836 3.429258273 1.004738573 0.443696177 0.393986783 0.206885604 260985443.8 368619851.7 12365670.53 0.051555534 4.00E-11 10.39835836 -0.561042396 LKEDILENEDEQNS(ph)PPK ddPTM_HeLa_A486_30min_R1 5 LKEDILENEDEQNSPPK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK ;;;; 208.63 1.10E-25 3088170000 3265170 2862480 1048871 2094590 2002120 3655370 4936790 3990560 2367180 6602420 TRUE FALSE FALSE 3036298.444 2635646.66 1455021.941 4876311.375 1750995.441 3204407.614 3701552.926 3081996.601 2572369.068 4949131.057 0.613501322 0.532547356 0.293995436 0.98528637 0.35379856 0.647468733 0.747919763 0.622734893 0.51976176 1 22.23874382 -14 0.240641274 3.313879781 0.552338565 0.305888247 0.184133943 211.2378244 2.108274827 239.5032041 0.280888841 1.00E-14 14 -2.761541217 LKEDILENEDEQNS(ph)PPKK ddPTM_HeLa_A485_30min_R1 2 LKEDILENEDEQNSPPKK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK ; 213.2 2.35E-26 2215890000 1579980 795080 468790 3606680 1334200 1141910 2215280 1830040 1041590 5022900 TRUE FALSE FALSE 1931441.1 888057.6897 642214.929 3803703.796 1201362.363 1201698.642 1741967.331 1381219.821 1250627.559 3770783.47 0.512212148 0.235510126 0.170313394 1.008730368 0.318597547 0.318686727 0.461964296 0.366295183 0.331662523 1 21.84643288 -10.87656447 2.683310367 1.273642487 0.413294545 0.38981771 0.220030745 42534242.31 27437767.99 74044336.91 0.056873781 1.33E-11 10.87656447 -0.860347942 LKEDILENEDEQNS(ph)PPKK ddPTM_HeLa_A486_30min_R1 4 LKEDILENEDEQNSPPKK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK ;;; 210.32 5.37E-26 5457100000 2537410 2071850 655886 1863450 1451080 3041200 4164650 3380230 1764250 5437860 TRUE FALSE FALSE 2359550.662 1907669.06 909862.6244 4338205.774 1269072.016 2666007.665 3122610.521 2610625.419 1917176.611 4076184.461 0.578862582 0.468003614 0.223214291 1.064281024 0.31133822 0.654044902 0.766062123 0.640458116 0.470336077 1 21.95878791 -14 0.164070579 2.548436072 0.473612439 0.243978784 0.224145589 192.1653835 1.784867295 97.38332556 0.873230674 1.00E-14 14 -2.074823633 LKEEHGIELS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 LKEEHGIELSSPR 13 1 O14647;O14647-2 O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 1 0 LKEEHGIELS(0.5)S(0.5)PR 55.864 0.019545 199340000 210840 214980 137170 61870 174800 191810 211370 194320 181390 240700 TRUE FALSE FALSE 196061.2048 197944.2019 190285.8975 144036.4867 152874.9541 168146.4324 158482.9904 150077.578 197113.0312 180427.1533 1.086650214 1.097086543 1.054641134 0.79830826 0.847294608 0.931935295 0.878376605 0.831790422 1.09247986 1 17.46105695 -5.109529183 6.197139388 0.901632059 1.088059955 0.472657694 0.081397617 0.184808448 8.976663547 0.02173239 0.038269971 7.77E-06 5.109529183 0.186427896 LKEFLALASSSLLK ddPTM_HeLa_A485_30min_R1 1 LKEFLALASSSLLK 14 1 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 0 165.33 1.51E-07 2930100 16050 11120 9350.6 13912 13990 11550 16254 15086 9659.4 21663 FALSE FALSE TRUE 19620.26713 12420.38727 12809.77605 14671.97733 12597.10648 12154.74014 12781.20012 11386.13485 11597.95298 16262.81278 1.206449794 0.76372934 0.787672848 0.902179563 0.7745958 0.747394704 0.785915714 0.700133181 0.713157874 1 13.98928918 -4.259397881 24.91551734 0.788194647 1.206449944 0.670575268 0.085844624 98.71376203 1204663.439 0.020642219 0.131624635 5.50E-05 4.259397881 0.418255297 LKEFLALASSSLLK ddPTM_HeLa_A486_30min_R1 2 LKEFLALASSSLLK 14 1 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 0 ; ; 131.53 4.55E-05 4470700 24004.9 19370.4 13065.2 8027.1 17567.6 21228.3 25388.2 20040.1 17333.3 26913.3 FALSE FALSE TRUE 22322.28047 17835.41896 18124.39534 18687.49447 15364.1078 18609.36818 19035.80383 15477.4067 18835.7644 20174.0345 1.106485689 0.884077945 0.898402119 0.926314192 0.761578344 0.922441576 0.943579423 0.76719442 0.933663735 1 14.30021201 -4.261232054 24.07768223 0.885352038 1.106485749 0.440678308 0.071676505 8.776910687 1018111.936 0.016920126 0.095424637 5.48E-05 4.261232054 0.221133711 LKEGHETPMDIDS(ph)DDSK ddPTM_HeLa_A485_30min_R1 1 LKEGHETPMDIDSDDSK 17 1 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 LKEGHETPMDIDS(0.999)DDS(0.001)K 138.82 1.86E-06 4161600000 182170 144650 94254 309650 183840 160980 257440 239920 150270 401130 TRUE FALSE FALSE 222693.088 161565.5592 129122.4768 326565.3954 165536.2441 169408.6639 202435.8409 181079.2438 180427.8106 301135.6733 0.739510818 0.536520823 0.428785057 1.084446063 0.549706524 0.562565909 0.672241315 0.601321132 0.599157877 1 18.2000541 -10.33009216 3.000844688 1.003506739 0.639951568 0.291383408 0.167662873 30207749.19 38353071.99 941877.8174 0.040911936 4.68E-11 10.33009216 -0.363555171 LKEGHETPMDIDS(ph)DDSK ddPTM_HeLa_A486_30min_R1 2 LKEGHETPMDIDSDDSK 17 1 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 LKEGHETPMDIDS(0.987)DDS(0.013)K;LKEGHETPMDIDS(1)DDSK ; 110.33 9.47E-05 6516200000 484900 464090 287290 148779 452910 482850 633210 586780 350600 641380 TRUE FALSE FALSE 450911.014 427313.8182 398536.3819 346365.0309 396101.8046 423280.8763 474774.1606 453183.0033 380990.2903 480774.2733 0.937885072 0.88880342 0.82894698 0.720431708 0.823883112 0.880414988 0.987519896 0.94261076 0.792451492 1 18.87500017 -6.524542415 7.843603672 0.927131308 0.83698948 0.251634445 0.07350158 0.185568043 95.83624903 0.029065034 0.023433443 2.99E-07 6.524542415 -0.090141827 LKEIFDKIHSLLSGKPVQSGGR ddPTM_HeLa_A485_30min_R1 2 LKEIFDKIHSLLSGKPVQSGGR 22 3 Q53GS7-2;Q53GS7 Q53GS7-2 GLE1 Nucleoporin GLE1 0 0 ; ; 88.036 0.00015757 7841100 58267.6 69321.9 43578.4 57913.6 68111.4 120413.6 101708 132870 65021.2 111032.1 FALSE FALSE TRUE 71229.0266 77428.49318 59699.86361 61077.27332 61329.98986 126718.2699 79977.25492 100283.4242 78070.35843 83353.84086 0.854538026 0.928913322 0.716222108 0.732746958 0.73577881 1.520245121 0.959490938 1.203105017 0.93661381 1 16.34696106 -6.159477746 20.80296018 1.126771038 0.793459516 0.496961752 0.166113688 8.096002561 1646.650779 0.052848769 0.052848846 6.93E-07 6.159477746 -0.333311521 LKENTNHDDS(ph)SRDSYSSDR ddPTM_HeLa_A485_30min_R1 2 LKENTNHDDSSRDSYSSDR 19 2 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 LKENT(0.001)NHDDS(0.59)S(0.409)RDSYSSDR;LKENTNHDDS(0.88)S(0.12)RDSYSSDR ; 115.11 1.64E-05 1439950000 596850 550530 471990 460100 994130 815990 949450 1109920 671520 1097610 TRUE FALSE FALSE 729617.2234 614909.6945 646598.7421 485234.098 895150.9266 858713.9746 746592.2512 837710.3797 806287.9045 823996.027 0.885462065 0.746253227 0.784710995 0.588879172 1.08635345 1.042133635 0.906062926 1.016643712 0.978509456 1 19.65227786 -5.773120852 24.99968975 1.002697503 0.753348596 0.706169208 0.080135411 123.0782804 263400.7962 0.024970328 0.028542963 1.69E-06 5.773120852 -0.249348907 LKENTNHDDS(ph)SRDSYSSDR ddPTM_HeLa_A486_30min_R1 4 LKENTNHDDSSRDSYSSDR 19 2 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 LKENTNHDDS(0.581)S(0.418)RDSYSSDR;LKENTNHDDS(0.498)S(0.498)RDS(0.003)YSSDR;LKENTNHDDS(0.585)S(0.415)RDSYSSDR;LKENTNHDDS(0.877)S(0.122)RDSYSSDR ;;; 109.39 2.63E-05 2693490000 1358720 1042440 743690 245223 1550280 1333060 1512460 1565360 1095640 1701970 TRUE FALSE FALSE 1263480.744 959833.2579 1031666.685 570891.5369 1355829.427 1168600.611 1134026.511 1208961.7 1190610.957 1275785.634 0.990355049 0.752346815 0.808652063 0.447482337 1.062740785 0.915985084 0.888884841 0.947621346 0.93323747 1 20.28295451 LKENTNHDDSS(ph)RDSYSSDR ddPTM_HeLa_A485_30min_R1 1 LKENTNHDDSSRDSYSSDR 19 2 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 LKENTNHDDS(0.236)S(0.761)RDS(0.002)YS(0.001)S(0.001)DR 66.52 0.003632 727480000 203030 189470 142720 151000 334530 254450 311470 362230 236630 359870 TRUE FALSE FALSE 248193.3231 211626.8683 195518.0671 159248.7476 301223.0186 267772.6085 244921.89 273392.5245 284119.4705 270161.0319 0.918686612 0.783336023 0.723709358 0.589458615 1.114975822 0.99115926 0.906577415 1.011961357 1.051667106 1 18.04346007 -5.769290839 24.99994349 1.006936048 0.753758364 0.667523174 0.089465776 113.6075273 361738.468 0.028988755 0.033464758 1.70E-06 5.769290839 -0.253177684 LKERPS(ph)SREDTPSR ddPTM_HeLa_A485_30min_R1 1 LKERPSSREDTPSR 14 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 LKERPS(0.5)S(0.5)REDTPSR 153.86 2.08E-07 751280000 230660 286780 230910 194890 386880 368980 442850 650840 279140 289660 TRUE FALSE FALSE 281969.5212 320316.4263 316333.218 205536.3472 348360.8688 388299.2222 348231.4797 491220.4695 335160.8376 217453.0928 1.296691243 1.473036885 1.454719332 0.945198546 1.602004664 1.785668887 1.601409643 2.258972099 1.541301773 1 17.7303447 -5.982848849 24.66719742 1.711672965 1.311493459 0.193567788 0.321508241 281.4374157 404767.4664 0.095963688 0.108787626 1.04E-06 5.982848849 -0.400179506 LKERPS(ph)SREDTPSR ddPTM_HeLa_A486_30min_R1 1 LKERPSSREDTPSR 14 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 LKERPS(0.86)S(0.14)REDTPSR 124.18 0.00017952 423140000 179730 181090 149410 73648 278770 159000 223460 229520 155490 201770 TRUE FALSE FALSE 167131.8551 166739.7689 207265.5533 171456.266 243804.0672 139384.1966 167547.9445 177263.3064 168967.9984 151245.4787 1.105037034 1.10244465 1.370391731 1.133629034 1.611975903 0.921575956 1.10778812 1.172023838 1.117177187 1 17.20653249 LKERPSS(ph)REDTPSR ddPTM_HeLa_A485_30min_R1 1 LKERPSSREDTPSR 14 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 LKERPS(0.128)S(0.87)REDT(0.002)PSR 133.32 8.47E-05 844380000 204870 298840 266110 184430 396700 352580 460510 621160 316900 319430 TRUE FALSE FALSE 250442.6247 333786.7384 364555.1628 194504.9439 357203.1551 371040.5436 362118.2765 468819.5361 380498.9232 239801.9797 1.044372632 1.391926534 1.520234167 0.811106498 1.489575506 1.547278901 1.510072089 1.955027797 1.58672136 1 17.87148404 -5.979427437 24.98902904 1.572180916 1.219735052 0.227219597 0.282193316 328.0822171 398512.1404 0.085912629 0.097406042 1.05E-06 5.979427437 -0.352445863 LKERPSS(ph)REDTPSR ddPTM_HeLa_A486_30min_R1 2 LKERPSSREDTPSR 14 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 LKERPS(0.479)S(0.521)REDTPSR;LKERPS(0.346)S(0.652)REDT(0.002)PSR ; 122.49 0.00024009 941890000 438350 462700 331590 210932 642260 451260 594760 643430 357450 504750 TRUE FALSE FALSE 407623.9286 426033.9669 459990.5283 491060.3559 561701.762 395588.1293 445944.7573 496935.035 388434.0538 378357.3146 1.077351786 1.126009596 1.215756933 1.29787462 1.484580158 1.045541117 1.1786339 1.313401422 1.026632865 1 18.52938981 -7.841309934 7.393952929 1.006087578 1.218650017 0.313088126 0.120980905 0.314539293 24.17965859 0.121622294 0.03156263 1.44E-08 7.841309934 0.212562439 LKETCVSGEDPTQGADLS(ph)PDEK ddPTM_HeLa_A485_30min_R1 1 LKETCVSGEDPTQGADLSPDEK 22 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LKETCVSGEDPTQGADLS(1)PDEK 175.23 9.41E-15 402760000 642260 399690 273480 1051100 588930 509760 839330 691380 475930 1364600 TRUE FALSE FALSE 785128.5212 446430.2687 374651.6325 1108518.931 530294.0613 536450.2454 660000.2888 521817.971 571444.7855 1024430.334 0.766404992 0.435783922 0.365717043 1.082083276 0.517647754 0.523657127 0.644260783 0.509373799 0.557817127 1 19.96639045 -10.08176824 4.657113042 1.000018742 0.596669446 0.281528186 0.191475873 256328118 2.46529646 58678.22173 0.045943618 8.28E-11 10.08176824 -0.403349296 LKETCVSGEDPTQGADLS(ph)PDEK ddPTM_HeLa_A486_30min_R1 2 LKETCVSGEDPTQGADLSPDEK 22 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LKETCVSGEDPTQGADLS(1)PDEK;LKETCVSGEDPTQGADLS(1)PDEK ; 213.37 5.87E-28 901240000 821790 792570 342934 563190 686040 899200 1180280 1148880 646220 1511770 TRUE FALSE FALSE 764186.7647 729763.8667 475727.2289 1311134.782 599990.4661 788265.8464 884961.4603 887305.1039 702234.8699 1133212.952 0.674354069 0.643977697 0.419803911 1.157006527 0.529459591 0.695602574 0.780931297 0.782999437 0.619684825 1 20.11198757 -14 0.206041124 2.358370327 0.660506712 0.189244311 0.184733797 247.2412318 2.458462501 139.0282504 0.404866465 1.00E-14 14 -1.697863615 LKFDFQAQS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LKFDFQAQSPK 11 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 LKFDFQAQS(1)PK;LKFDFQAQS(1)PK ; 123.76 3.29E-05 839260000 746380 592900 332830 1163200 861320 741920 1153850 1223980 542240 1592350 TRUE FALSE FALSE 912409.656 662234.4975 455957.6672 1226742.671 775563.9565 780765.784 907320.5214 923796.9859 651062.5943 1195406.45 0.763263119 0.553982704 0.381424801 1.026213863 0.648786826 0.65313834 0.759005877 0.772789026 0.54463701 1 20.1890698 -14 0.310248631 3.81032566 0.66503549 0.249297383 0.164370753 434.6728022 3.947514969 799.07881 0.157099053 1.00E-14 14 -3.14529017 LKFDFQAQS(ph)PK ddPTM_HeLa_A486_30min_R1 1 LKFDFQAQSPK 11 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 LKFDFQAQS(1)PK 172.09 1.32E-08 523490000 831240 706670 292210 551440 565060 838230 1119100 1024400 491680 1365900 TRUE FALSE FALSE 772974.3685 650670.8956 405361.5377 1283780.188 494184.9058 734817.7051 839089.3434 791166.4825 534299.2183 1023869.749 0.75495381 0.635501631 0.395911236 1.253851077 0.482663841 0.717686703 0.819527429 0.772721807 0.521842958 1 19.96560077 -11.04940474 2.547837737 1.387563881 0.710054272 0.133195221 0.224738657 47675840.21 18448949.85 107579385.7 0.05321386 8.92E-12 11.04940474 -0.677509609 LKFGTFGGLGS(ph)K ddPTM_HeLa_A485_30min_R1 2 LKFGTFGGLGSK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LKFGTFGGLGS(1)K;LKFGTFGGLGS(1)K ; 146.37 8.72E-08 1599320000 1814920 1357480 745060 2022780 1657240 1307830 3462400 3852900 2202300 3859700 TRUE FALSE FALSE 2218642.693 1516225.477 1020688.699 2133279.349 1492239.367 1376305.957 2722629.955 2907970.234 2644281.409 2897547.823 0.765696661 0.523278845 0.352259483 0.736236114 0.515000772 0.474989902 0.939632448 1.003596976 0.912592844 1 21.46640104 -6.771132564 23.68595801 0.964255628 0.55587094 0.74467764 0.115495095 53.58677344 130940.5298 0.047930237 0.032821551 1.69E-07 6.771132564 -0.408384688 LKFGTFGGLGS(ph)K ddPTM_HeLa_A486_30min_R1 1 LKFGTFGGLGSK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LKFGTFGGLGS(1)K 164.5 1.21E-10 880990000 1663000 1039400 318190 810900 787800 1591200 2153400 2382600 692870 2061700 TRUE FALSE FALSE 1546432.288 957034.1586 441401.6894 1887816.181 688986.7781 1394893.922 1614596.544 1840133.992 752928.5295 1545436.901 1.000644081 0.619264467 0.285616119 1.221542064 0.445820064 0.902588725 1.044750868 1.19068853 0.487194611 1 20.55958332 -6.497846748 24.18945345 0.950423634 0.709674564 0.109947771 0.297985593 1045.311835 1010130.082 0.102518143 0.089970626 3.18E-07 6.497846748 -0.240749069 LKFS(ph)DDEEEEEVVK ddPTM_HeLa_A485_30min_R1 5 LKFSDDEEEEEVVK 14 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK ;;;; 240.68 1.28E-35 3061172000 3852264 2218296 1396458 7552172 3003310 2710723 4987902 3284762 2374746 9322366 TRUE FALSE FALSE 4709186.837 2477706.421 1913065.926 7964728.033 2704289.911 2852652.265 3922195.99 2479168.969 2851335.74 6998471.722 0.672887885 0.354035355 0.273354813 1.138066759 0.386411494 0.407610744 0.56043607 0.354244336 0.407422628 1 22.73860848 -10.17096129 4.662564614 1.000063174 0.504046172 0.280089612 0.237551175 0.000166577 2.96E-05 0.229499525 0.055654254 6.75E-11 10.17096129 -0.496017003 LKFS(ph)DDEEEEEVVK ddPTM_HeLa_A486_30min_R1 7 LKFSDDEEEEEVVK 14 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK ;;;;;; 243.87 9.36E-36 6199080000 5906520 5477828 1708271 4211285 3718374 7494159 9390970 7833415 4193702 11788170 TRUE FALSE FALSE 5492503.449 5043744.959 2369759.28 9804084.307 3251980.86 6569605.858 7041249.978 6049917.407 4557215.466 8836335.504 0.621581587 0.570796 0.268183488 1.109519246 0.368023697 0.743476281 0.796851814 0.684663615 0.515735903 1 23.07501677 -14 0.169652066 2.361343796 0.551577146 0.195854174 0.221908156 220.3698193 2.075522158 101.750121 0.784505993 1.00E-14 14 -1.80976665 LKFS(ph)DDEEEEEVVKDGRPK ddPTM_HeLa_A485_30min_R1 3 LKFSDDEEEEEVVKDGRPK 19 3 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LKFS(1)DDEEEEEVVKDGRPK;LKFS(1)DDEEEEEVVKDGRPK;LKFS(1)DDEEEEEVVKDGRPK ;; 158.77 1.03E-08 3107390000 2013770 1206620 538830 4151900 1990360 1968360 4592500 4004300 1165260 5524500 TRUE FALSE FALSE 2461726.189 1347723.713 738165.6396 4378707.784 1792192.77 2071420.286 3611274.858 3022239.147 1399116.994 4147343.821 0.593566942 0.324960691 0.177985157 1.055786058 0.432130261 0.499457092 0.870744026 0.728716807 0.337352545 1 21.98375622 -14 0.068929375 2.366893456 0.054893814 0.210848531 0.254169182 509.0141055 2.525056428 113.7867315 14.59339298 1.00E-14 14 -2.311999642 LKFS(ph)DDEEEEEVVKDGRPK ddPTM_HeLa_A486_30min_R1 4 LKFSDDEEEEEVVKDGRPK 19 3 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LKFS(1)DDEEEEEVVKDGRPK;LKFS(1)DDEEEEEVVKDGRPK;LKFS(1)DDEEEEEVVKDGRPK;LKFS(1)DDEEEEEVVKDGRPK ;;; 221.39 5.97E-34 4961680000 2469394 1721672 489868 2808026 1640091 2958013 5399400 4391380 1365261 6197690 TRUE FALSE FALSE 2296302.233 1585240.44 679558.0087 6537226.438 1434375.494 2593083.431 4048413.011 3391558.637 1483602.923 4645748.084 0.494280402 0.341223935 0.14627526 1.407141825 0.308750166 0.558162729 0.871423275 0.730034986 0.319346399 1 22.1474795 LKFS(ph)DEEDGRDS(ph)DEEGAEGHR ddPTM_HeLa_A485_30min_R1 4 LKFSDEEDGRDSDEEGAEGHR 21 2 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR ;;; 194.26 4.70E-20 5209460000 4126880 2858410 2344930 6491430 3920180 2904810 4577760 3222250 2901000 7836090 TRUE FALSE FALSE 5044890.218 3192676.185 3212417.188 6846040.384 3529873.115 3056901.36 3599684.179 2431988.135 3483204.09 5882696.976 0.857581181 0.54272321 0.546078984 1.163758802 0.600043335 0.519642839 0.611910522 0.413413804 0.592110065 1 22.48804629 -4.239338545 22.77165326 0.650746665 0.857581922 0.060060245 0.221091876 4979.049064 5129905.075 0.05570733 2.276336784 5.76E-05 4.239338545 0.206835257 LKFS(ph)DEEDGRDS(ph)DEEGAEGHR ddPTM_HeLa_A486_30min_R1 4 LKFSDEEDGRDSDEEGAEGHR 21 2 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR;LKFS(1)DEEDGRDS(1)DEEGAEGHR ;;; 210.51 4.10E-27 7257320000 3830120 3762330 1853600 2217910 2852110 4222730 4853110 4166670 2972960 5515390 TRUE FALSE FALSE 3561648.367 3464189.269 2571363.561 5163406.567 2494371.769 3701772.506 3638810.547 3218010.199 3230658.567 4134300.445 0.861487551 0.837914253 0.621958562 1.248919046 0.603335873 0.895380623 0.880151454 0.778368733 0.781428106 1 21.9792118 -10.18224478 4.778796824 1.000020388 0.835084151 0.080303221 0.168183408 3.42E-05 5.86E-06 0.152542833 0.0369925 6.57E-11 10.18224478 -0.164936237 LKGDDLQAIKK ddPTM_HeLa_A485_30min_R1 1 LKGDDLQAIKK 11 2 P07910;P07910-2;G3V2Q1;G3V4C1;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 94.191 0.0018056 250960000 676790 640790 437340 716780 773570 853450 1074500 1254800 610580 1036300 FALSE FALSE TRUE 827339.6006 715724.8164 599130.2652 755935.8764 696550.6546 898135.3223 844924.2971 947058.3325 733117.8054 777969.4817 1.063460226 0.919990865 0.770120524 0.97167806 0.895344446 1.154460867 1.08606355 1.21734638 0.942347769 1 19.56935404 -6.25381538 24.8685559 1.094004103 0.917976205 0.380186833 0.098587454 522.6016958 1704664.768 0.032337637 0.031719929 5.57E-07 6.25381538 -0.176027898 LKGEATVSFDDPPSAK ddPTM_HeLa_A486_30min_R1 1 LKGEATVSFDDPPSAK 16 1 H3BPE7;P35637-2;P35637 H3BPE7 FUS RNA-binding protein FUS 0 0 109.38 0.00040071 22797000 40027 39441 20007 17294 38463 40858 47965 48215 30790 51564 FALSE FALSE TRUE 37221.314 36315.55152 27754.24621 40261.30599 33638.61189 35817.35537 35963.64968 37237.49703 33458.90199 38652.03877 0.962984494 0.939550737 0.718053875 1.04163473 0.870293339 0.926661478 0.930446383 0.963403179 0.86564391 1 15.23825689 -13.99999998 0.232248457 1.469288645 0.903747796 0.088621696 0.080800088 413.8893847 4.142218199 91.46899236 0.133568344 1.00E-14 13.99999998 -0.565540848 LKGLGCQT(ph)LGPHNPTPPPSLDMFAEELAEEELETPTPTQR ddPTM_HeLa_A485_30min_R1 1 LKGLGCQTLGPHNPTPPPSLDMFAEELAEEELETPTPTQR 40 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 LKGLGCQT(0.465)LGPHNPT(0.465)PPPS(0.07)LDMFAEELAEEELETPTPTQR 66.658 0.00283 57451000 4456.7 6084.2 3962.3 2276.5 7859.6 7310.2 8264.2 10950 3596.9 5686.6 TRUE FALSE FALSE 5448.07754 6795.694264 5428.119655 2400.859431 7077.070627 7692.950768 6498.486158 8264.495331 4318.764837 4269.035274 1.276184709 1.591857136 1.271509675 0.562389223 1.657768131 1.80203495 1.522237635 1.935916384 1.0116489 1 12.05969437 LKGLGCQTLGPHNPT(ph)PPPSLDMFAEELAEEELETPTPTQR ddPTM_HeLa_A485_30min_R1 1 LKGLGCQTLGPHNPTPPPSLDMFAEELAEEELETPTPTQR 40 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 LKGLGCQT(0.117)LGPHNPT(0.779)PPPS(0.104)LDMFAEELAEEELETPTPTQR 66.658 0.00283 60255000 21965 25698 20348 16423 28455 32589 44103 56134 21558 22036 TRUE FALSE FALSE 26851.03847 28703.15756 27875.57195 17320.1469 25621.92029 34295.30965 34680.03376 42367.04849 25884.49286 16542.83074 1.62312236 1.735081378 1.685054534 1.046988099 1.548823215 2.073122199 2.096378443 2.561051923 1.564695502 1 14.0139185 -6.248466634 19.75833181 1.971448279 1.521351073 0.105338941 0.423243313 76.80045431 116970.2444 0.136928044 0.135460966 5.64E-07 6.248466634 -0.450097206 LKGNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A485_30min_R1 3 LKGNKHDDGTQSDSENAGAHR 21 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LKGNKHDDGT(0.191)QS(0.808)DS(0.001)ENAGAHR;LKGNKHDDGT(0.011)QS(0.989)DSENAGAHR;LKGNKHDDGT(0.008)QS(0.992)DSENAGAHR ;; 253.08 4.08E-59 1764470000 1219062 903235 657227 1337643 1418220 1307940 1964210 2155510 1044272 2002809 TRUE FALSE FALSE 1490238.136 1008860.476 900362.6168 1410715.05 1277017.037 1376421.716 1544540.487 1626867.793 1253847.812 1503545.575 0.991149295 0.670987626 0.598826289 0.938258922 0.849337099 0.915450611 1.027265494 1.082020937 0.833927373 1 20.51993717 -5.917413406 1.34408006 0.985139678 0.759856056 0.331877341 0.120841487 0.464003394 1.747326939 0.050558461 0.061485743 1.21E-06 5.917413406 -0.225283622 LKGNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A486_30min_R1 3 LKGNKHDDGTQSDSENAGAHR 21 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LKGNKHDDGT(0.006)QS(0.994)DSENAGAHR;LKGNKHDDGT(0.022)QS(0.977)DS(0.001)ENAGAHR;LKGNKHDDGT(0.372)QS(0.628)DSENAGAHR ;; 244.71 5.72E-47 1847530000 838395 737239 356170 348021 749948 838090 1084970 1013850 589775 1027510 TRUE FALSE FALSE 779627.84 678817.4967 494088.5626 810210.476 655882.5289 734694.9769 813499.0304 783018.4872 640897.1719 770214.808 1.012221307 0.881335297 0.641494499 1.05192794 0.851557932 0.953883214 1.056197598 1.016623517 0.832101857 1 19.55490133 -5.935179328 1.432509329 0.975671817 0.867144831 0.102004229 0.116780032 0.88052491 3.739232723 0.04779557 0.056646261 1.16E-06 5.935179328 -0.108526987 LKGNKHDDGTQS(ph)DSENAGAHRR ddPTM_HeLa_A485_30min_R1 1 LKGNKHDDGTQSDSENAGAHRR 22 3 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LKGNKHDDGTQS(0.999)DS(0.001)ENAGAHRR 128.19 8.74E-07 317130000 46549 50903 26414 35057 52647 55887 72833 107050 34250 46053 TRUE FALSE FALSE 56903.66446 56855.66305 36185.63778 36972.07514 47405.27983 58813.1569 57271.63456 80795.81965 41123.66084 34572.83464 1.645906824 1.64451841 1.046649433 1.069396696 1.371171335 1.70113783 1.656550154 2.336974115 1.189479002 1 15.07735128 -6.228373023 6.455812288 1.665546744 1.337091066 0.052690938 0.383211484 0.413942929 56.98219506 0.128136386 0.125962052 5.91E-07 6.228373023 -0.328455678 LKGNKHDDGTQS(ph)DSENAGAHRR ddPTM_HeLa_A486_30min_R1 3 LKGNKHDDGTQSDSENAGAHRR 22 3 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LKGNKHDDGT(0.003)QS(0.996)DSENAGAHRR;LKGNKHDDGTQS(1)DSENAGAHRR;LKGNKHDDGT(0.013)QS(0.951)DS(0.035)ENAGAHRR ;; 140.41 6.78E-08 2366100000 625269 423724 224472 178735 503178 429405 541568 582990 280841 662339 TRUE FALSE FALSE 581440.872 390146.5671 311393.57 416104.1128 440064.7233 376429.377 406061.9583 450255.9036 305184.524 496485.0033 1.171114672 0.785817425 0.627196326 0.838100063 0.886360555 0.758188816 0.817873562 0.906887218 0.614690317 1 18.92139062 -4.260277558 24.66783515 0.798123412 1.171114814 0.488091507 0.112679944 67.24876447 1427612.834 0.026723091 0.160091532 5.49E-05 4.260277558 0.372991402 LKGPK(ac)FK ddPTM_HeLa_A486_30min_R1 2 LKGPKFK 7 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 ; LKGPK(1)FK;LKGPK(1)FK 97.798 0.020406 0 157348 162722 104867 64439 172804 154722 172120 170210 134960 170608 FALSE TRUE FALSE 146318.7177 149827.3161 145474.3108 150017.2486 151129.311 135633.9727 129053.7555 131456.8987 146658.4415 127886.6463 1.144128194 1.171563415 1.137525418 1.173048578 1.181744266 1.060579635 1.009126122 1.027917319 1.146784638 1 16.9645061 -6.314137087 5.941065551 1.04720726 1.161421239 0.670913128 0.039502285 0.13236675 10.82151089 0.01387606 0.012304704 4.85E-07 6.314137087 0.114213979 LKGQEDSLASAVDAATEQKTCDS(ph)D ddPTM_HeLa_A486_30min_R1 2 LKGQEDSLASAVDAATEQKTCDSD 24 2 J3KR35;Q8WUD4 J3KR35 CCDC12 Coiled-coil domain-containing protein 12 1 0 LKGQEDSLASAVDAATEQKT(0.001)CDS(0.999)D;LKGQEDSLASAVDAATEQKTCDS(1)D ; 221.77 3.12E-38 580410000 531250 386770 247120 561040 804330 527800 971670 1029420 277570 807590 TRUE FALSE FALSE 494012.1184 356120.9366 342811.4821 1306129.473 703443.4313 462685.4023 728547.8887 795043.5381 301629.9911 605364.2075 0.816057693 0.588275508 0.566289645 2.15759283 1.162016886 0.764309149 1.203486892 1.313330931 0.498262017 1 19.20744385 LKGSGNLEAIHIIK ddPTM_HeLa_A486_30min_R1 1 LKGSGNLEAIHIIK 14 1 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 81.647 0.0080724 7570200 24620 27221 18877 15572 29155 25925 31783 30233 21757 38433 FALSE FALSE TRUE 22894.26514 25063.90882 26186.67994 36252.40297 25498.10804 22726.63709 23830.55723 23349.60588 23642.91428 28809.12664 0.794687927 0.869998912 0.90897167 1.258365219 0.885070497 0.788869353 0.82718777 0.810493361 0.820674454 1 14.81423831 -5.991715313 24.99974837 0.836294174 0.963654808 0.138818368 0.125382216 350.6142007 1057999.5 0.040618753 0.045986261 1.02E-06 5.991715313 0.127360634 LKGSSHS(ph)PDHPGCLMEN ddPTM_HeLa_A485_30min_R1 2 LKGSSHSPDHPGCLMEN 17 1 O95149 O95149 SNUPN Snurportin-1 1 0 LKGS(0.023)S(0.023)HS(0.953)PDHPGCLMEN;LKGS(0.026)S(0.026)HS(0.948)PDHPGCLMEN ; 60.619 0.01173 1145900000 812270 1250200 1136350 515710 1565410 1131140 1355580 1449210 1050420 1026350 TRUE FALSE FALSE 992956.6592 1396400.015 1556733.152 543881.9315 1409552.284 1190364.741 1065949.259 1093788.975 1261229.659 770499.8336 1.288717552 1.812330067 2.020419843 0.705881958 1.829399855 1.544925371 1.383451641 1.419583662 1.636898029 1 19.55543512 -11.84441478 0.324075638 6.64E-16 1.546734067 0.162572544 0.346066729 130.1953159 4.123865914 90.54786351 0.306688818 1.43E-12 11.84441478 1.546734067 LKGSSHS(ph)PDHPGCLMEN ddPTM_HeLa_A486_30min_R1 2 LKGSSHSPDHPGCLMEN 17 1 O95149 O95149 SNUPN Snurportin-1 1 0 LKGS(0.007)S(0.005)HS(0.988)PDHPGCLMEN;LKGS(0.002)S(0.002)HS(0.997)PDHPGCLMEN ; 129.2 6.96E-06 899860000 1254420 1588780 1171500 92520 1928370 1358710 1667170 1585710 1440000 1022100 TRUE FALSE FALSE 1166491.636 1462879.287 1625136.174 215391.2357 1686495.853 1191086.175 1250026.432 1224678.449 1564820.359 766159.5072 1.522517994 1.909366487 2.121146 0.281131062 2.201233343 1.554619062 1.631548549 1.598464076 2.042421121 1 19.54728525 -10.16122015 4.763313489 0.999935297 1.643672108 0.125807288 0.514758947 0.000343318 6.05E-05 0.481148545 0.116683931 6.90E-11 10.16122015 0.64373681 LKGTS(ph)PSSSSRPQR ddPTM_HeLa_A485_30min_R1 3 LKGTSPSSSSRPQR 14 2 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 LKGT(0.074)S(0.524)PS(0.144)S(0.176)S(0.041)S(0.041)RPQR;LKGT(0.104)S(0.896)PSSSSRPQR;LKGT(0.07)S(0.358)PS(0.052)S(0.052)S(0.235)S(0.235)RPQR ;; 130.27 8.97E-06 11880500000 2165880 2520180 2131470 2049400 2888860 2774930 3641160 4112650 2176510 2810240 TRUE FALSE FALSE 2647672.534 2814893.128 2919989.451 2161353.533 2601234.955 2920221.044 2863196.42 3104016.139 2613315.593 2109698.887 1.255000204 1.334262982 1.384078775 1.024484369 1.232988732 1.384188551 1.357158805 1.471307663 1.23871497 1 21.00860567 -6.235653273 23.58524589 1.323911043 1.24640395 0 0.146566377 1215.619003 1111864.389 0.04789415 0.047874292 5.81E-07 6.235653273 -0.077507093 LKGTS(ph)PSSSSRPQR ddPTM_HeLa_A486_30min_R1 3 LKGTSPSSSSRPQR 14 2 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 LKGT(0.166)S(0.831)PS(0.003)SSSRPQR;LKGT(0.163)S(0.832)PS(0.004)SSSRPQR;LKGT(0.008)S(0.989)PS(0.003)SSSRPQR ;; 134.08 5.92E-06 8915430000 1970390 1868930 1228520 777560 2089710 1828160 2370240 2261540 1514380 2328730 TRUE FALSE FALSE 1832275.836 1720829.18 1704235.845 1810198.976 1827599.086 1602620.207 1777180.882 1746636.711 1645647.678 1745600.851 1.049653382 0.985809087 0.976303285 1.037006241 1.046974218 0.918090872 1.01809121 1.000593412 0.942739961 1 20.73529228 -6.224394552 24.9999359 0.978576858 1.015908728 0.268914083 0.03531481 954.1848391 643937.8614 0.011786768 0.011786467 5.96E-07 6.224394552 0.03733187 LKGTSPSS(ph)SSRPQR ddPTM_HeLa_A485_30min_R1 1 LKGTSPSSSSRPQR 14 2 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 LKGT(0.039)S(0.109)PS(0.065)S(0.263)S(0.263)S(0.263)RPQR 72.627 0.0063955 8791700000 1347500 1518400 1222000 1284500 1695500 1602900 2057400 2480300 1232900 1604400 TRUE FALSE FALSE 1647246.726 1695963.672 1674068.652 1354668.982 1526690.067 1686825.365 1617819.683 1872002.536 1480331.721 1204452.607 1.367631003 1.408078377 1.389899978 1.124717548 1.267538513 1.400491274 1.343199121 1.554235115 1.229049373 1 20.1999462 -8.010905022 24.5693144 0.999999984 1.352643199 0.52914989 0.103390812 335.7039138 756351.653 0.105335154 0.02719742 9.75E-09 8.010905022 0.352643215 LKGTSPSSS(ph)SRPQR ddPTM_HeLa_A486_30min_R1 1 LKGTSPSSSSRPQR 14 2 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 LKGT(0.036)S(0.109)PS(0.033)S(0.162)S(0.33)S(0.33)RPQR 85.982 0.0011947 1468100000 939660 913020 504210 336210 948120 772170 1043200 1011200 629910 933050 TRUE FALSE FALSE 873794.6864 840668.97 699453.6152 782713.8711 829197.9487 676907.5162 782180.3262 780971.8343 684511.106 699408.2069 1.249334334 1.201971841 1.000064924 1.119108789 1.185570802 0.967828958 1.118345937 1.116618059 0.97870042 1 19.4157752 -1.000000003 0.58953102 1.059656005 12.96691008 0.414978197 0.07367341 166.2351953 1.337460528 0.033646426 2541.172318 0.099999999 1.000000003 11.90725407 LKIS(ph)LGK ddPTM_HeLa_A485_30min_R1 2 LKISLGK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LKIS(1)LGK;LKIS(1)LGK ; 98.04 0.0024244 1089170000 1807480 1503930 872460 2455600 2104300 1742370 2635400 3037200 1484670 3882500 TRUE FALSE FALSE 2209547.69 1679801.531 1195219.26 2589743.21 1894788.503 1833597.799 2072325.261 2292321.938 1782629.651 2914664.202 0.758079675 0.576327637 0.410070999 0.888521981 0.650088097 0.629094013 0.710999661 0.786478915 0.611607213 1 21.47489825 -14 0.203900293 2.541450028 0.617157717 0.393068886 0.123463824 146.7404652 1.45675266 92.19115294 0.284156759 1.00E-14 14 -1.92429231 LKIS(ph)LGK ddPTM_HeLa_A486_30min_R1 2 LKISLGK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LKIS(1)LGK;LKIS(1)LGK ; 84.882 0.0041787 835880000 1789440 1386920 578110 739490 1085450 1753760 2208960 1861710 1100650 2585820 TRUE FALSE FALSE 1664009.497 1277015.408 801969.6743 1721570.092 949302.7396 1537398.922 1656254.844 1437839.274 1196055.228 1938313.841 0.858483008 0.658827988 0.413746039 0.888179228 0.489756983 0.793163052 0.854482287 0.741799002 0.617059633 1 20.88637075 LKLEDFFAR ddPTM_HeLa_A485_30min_R1 2 LKLEDFFAR 9 1 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 130.98 0.00030244 636800000 690580 795300 613410 755320 939780 902680 1088990 1280830 698890 1030940 FALSE FALSE TRUE 844197.1385 888303.4168 840335.8851 796581.219 846212.2034 949942.929 856318.3903 966704.4342 839150.8124 773945.631 1.090770598 1.147759456 1.085781548 1.029247 1.093374224 1.227402664 1.10643223 1.249059876 1.084250338 1 19.5618727 -6.042472435 24.96052433 1.148761364 1.088552322 0.067089444 0.07166786 923.5568228 542761.3104 0.022446231 0.02244789 9.07E-07 6.042472435 -0.060209042 LKLEDFFAR ddPTM_HeLa_A486_30min_R1 2 LKLEDFFAR 9 1 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 143.96 0.00013849 358700000 713750 723570 482890 311880 968960 806910 929140 948590 666480 1048720 FALSE FALSE TRUE 663719.8108 666231.678 669877.9402 726072.4015 847424.0016 707361.6483 696659.3446 732616.7646 724251.023 786113.686 0.844305121 0.847500419 0.852138758 0.923622645 1.077991665 0.899821058 0.886206864 0.931947602 0.921305704 1 19.58437844 -5.30927856 4.444361096 0.947692482 0.847186386 0.445775878 0.051918534 0.213134906 9.326855773 0.01561996 0.024440786 4.91E-06 5.30927856 -0.100506097 LKLLLPWLEAR ddPTM_HeLa_A485_30min_R1 1 LKLLLPWLEAR 11 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 131.69 0.0027532 0 66982 144670 94854 35671 108410 127430 154850 224120 60929 57131 FALSE FALSE TRUE 81881.91481 161587.898 129944.4418 37619.61641 97616.31975 134102.0378 121765.0325 169154.2186 73156.89143 42889.29312 1.909145823 3.767557968 3.029764129 0.877133048 2.276006729 3.126701981 2.83905431 3.943973106 1.705714553 1 15.38832992 -6.218059483 24.61875405 2.726835991 2.402959925 0 1.02575284 2166.517762 1229531.078 0.342062054 0.342059622 6.05E-07 6.218059483 -0.323876066 LKLLLPWLEAR ddPTM_HeLa_A486_30min_R1 1 LKLLLPWLEAR 11 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 95.417 0.016191 0 14248 10866 7709 4972.9 13624 8560.3 11855 12389 7197.5 15673 FALSE FALSE TRUE 13249.28878 10004.93859 10694.13125 11577.16252 11915.15088 7504.217221 8888.753611 9568.29515 7821.385095 11748.37879 1.127754648 0.851601635 0.910264424 0.985426392 1.014195328 0.638744916 0.756594061 0.814435364 0.665741651 1 13.52017407 -6.247657351 24.83731649 0.762348584 0.967501104 0.440664147 0.113457798 669.5427633 1206618.581 0.035882605 0.035694452 5.65E-07 6.247657351 0.20515252 LKLS(ph)PNKYQPIQPIQTSK ddPTM_HeLa_A485_30min_R1 1 LKLSPNKYQPIQPIQTSK 18 2 H0YDK0;Q9C0D2;Q9C0D2-3 H0YDK0 CEP295 Centrosomal protein of 295 kDa 1 0 LKLS(0.999)PNKY(0.001)QPIQPIQTSK 119.41 1.79E-05 194990000 233370 192040 123560 303710 253840 282360 410230 446160 208600 451390 TRUE FALSE FALSE 285282.3514 214497.4075 169269.9858 320300.9083 228566.7983 297143.933 322581.0092 336738.5604 250464.1066 338866.7802 0.841871697 0.632984465 0.499517792 0.945211886 0.674503409 0.876875369 0.951940491 0.993719598 0.739122632 1 18.37035869 -6.071328238 1.139645165 0.923535172 0.682909264 0.340173355 0.132126621 0.540838091 1.476088219 0.063231238 0.068196547 8.49E-07 6.071328238 -0.240625908 LKLS(ph)PS(ph)PSSR ddPTM_HeLa_A485_30min_R1 6 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 0 LKLS(1)PS(0.992)PS(0.008)SR;LKLS(0.999)PS(0.749)PS(0.245)S(0.007)R;LKLS(0.991)PS(0.796)PS(0.179)S(0.034)R;LKLS(1)PS(0.996)PS(0.004)S(0.001)R;LKLS(0.987)PS(0.835)PS(0.153)S(0.024)R;LKLS(0.998)PS(0.963)PS(0.033)S(0.005)R ;;;;; 93.468 0.0029894 24378900000 15211850 14159590 10863350 22055660 18548030 16842600 23838790 26440240 13456540 28421900 TRUE FALSE FALSE 18595673.55 15815430.88 14882155.23 23260504.86 16701323.01 17724452.49 18745437.77 19955729.68 16157144.15 21336843.4 0.871528801 0.741226365 0.697486266 1.090156797 0.782745728 0.830697033 0.878547844 0.935270945 0.75724154 1 24.34684342 -14 0.133975757 1.488615442 0.787211842 0.150523832 0.107719598 278.5610418 2.324585795 37.03878843 0.756091668 1.00E-14 14 -0.7014036 LKLS(ph)PS(ph)PSSR ddPTM_HeLa_A486_30min_R1 7 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 0 LKLS(0.999)PS(0.985)PS(0.013)S(0.003)R;LKLS(0.995)PS(0.465)PS(0.464)S(0.076)R;LKLS(0.998)PS(0.884)PS(0.116)S(0.002)R;LKLS(1)PS(0.977)PS(0.023)S(0.001)R;LKLS(0.992)PS(0.482)PS(0.481)S(0.045)R;LKLS(1)PS(0.881)PS(0.118)S(0.002)R;LKLS(0.994)PS(0.838)PS(0.158)S(0.01)R ;;;;;; 111.88 0.00072543 21412290000 16371850 15349450 8668740 8279050 14439720 17132330 21320580 20438080 11675110 25187400 TRUE FALSE FALSE 15224267.86 14133103.68 12025508.28 19274046.8 12628555.67 15018717.31 15985945.38 15784775.34 12687117.94 18880311.1 0.806356833 0.748563072 0.6369338 1.020854302 0.668874343 0.795469801 0.846699257 0.83604424 0.671976106 1 24.1703792 -10.35376951 3.515699601 1.001155326 0.783786884 0.277277506 0.105853077 63425913.28 89615975.68 745837.3465 0.025298207 4.43E-11 10.35376951 -0.217368441 LKLS(ph)PSPS(ph)SR ddPTM_HeLa_A485_30min_R1 4 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 0 LKLS(0.959)PS(0.066)PS(0.929)S(0.046)R;LKLS(0.799)PS(0.226)PS(0.851)S(0.123)R;LKLS(0.994)PS(0.153)PS(0.742)S(0.111)R;LKLS(0.957)PS(0.136)PS(0.679)S(0.228)R ;;; 125.97 0.0004501 4270830000 4182880 4233060 3153530 6249630 5312030 4733200 6710580 7414500 3763770 7941100 TRUE FALSE FALSE 5113347.225 4728079.544 4320151.976 6591031.462 4783145.642 4981023.033 5276809.763 5596082.25 4519124.116 5961529.915 0.85772399 0.793098351 0.724671693 1.105593959 0.802335258 0.835527642 0.885143552 0.938699013 0.758047713 1 22.50725119 -11.73843971 2.153043471 6.505617309 0.85845862 0.152089525 0.102056822 5751227.198 284921.7074 156514445.8 0.025336368 1.83E-12 11.73843971 -5.647158689 LKLS(ph)PSPS(ph)SR ddPTM_HeLa_A486_30min_R1 3 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 0 LKLS(0.988)PS(0.014)PS(0.983)S(0.016)R;LKLS(0.765)PS(0.255)PS(0.853)S(0.127)R;LKLS(0.985)PS(0.027)PS(0.863)S(0.125)R ;; 109.84 0.0031068 6852390000 3058520 3062290 1599521 1537404 2677280 3095340 4083610 3830740 2140992 4527660 TRUE FALSE FALSE 2844133.542 2819622.988 2218898.368 3579154.208 2341470.578 2713468.422 3061847.586 2958564.126 2326574.91 3393904.466 0.838012257 0.830790323 0.653789283 1.054583075 0.689904681 0.799512317 0.902160805 0.871728758 0.685515734 1 21.69451452 -10.24034179 4.394079215 1.000082062 0.817072381 0.19558124 0.113010553 16403858486 2835928716 14358076.85 0.025943408 5.75E-11 10.24034179 -0.183009682 LKLS(ph)PSPSS(ph)R ddPTM_HeLa_A486_30min_R1 1 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 0 LKLS(0.948)PS(0.106)PS(0.386)S(0.559)R 164.57 1.92E-06 4434300000 526200 496950 271320 267380 469480 574140 703190 705460 387070 860660 TRUE FALSE FALSE 489316.0973 457569.8721 376382.3702 622474.1526 410593.4407 503308.4442 527244.4244 544842.1581 420621.5393 645145.134 0.758458944 0.709251063 0.583407284 0.964859099 0.636435771 0.780147625 0.817249324 0.844526494 0.651979713 1 19.29926423 -14 0.222376735 2.252752796 0.722481434 0.322983627 0.106950713 182.4438478 1.826557035 102.7172653 0.194332017 1.00E-14 14 -1.530271362 LKLS(ph)PSPSSR ddPTM_HeLa_A485_30min_R1 6 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 0 LKLS(0.499)PS(0.499)PS(0.001)SR;LKLS(0.91)PS(0.09)PSSR;LKLS(0.5)PS(0.5)PS(0.001)SR;LKLS(0.754)PS(0.245)PS(0.001)SR;LKLS(0.5)PS(0.5)PSSR;LKLS(0.675)PS(0.325)PSSR ;;;;; 152.16 1.53E-06 59340530000 11913260 11735410 9796140 14068410 14056390 12995740 18095590 20086300 10397400 17164120 TRUE FALSE FALSE 14563323.59 13107764.12 13420139.84 14836931.62 12656886.46 13676176.85 14229319.37 15160103.43 12484062.81 12885420.77 1.130217154 1.01725542 1.041497991 1.151451077 0.982264117 1.061368278 1.104296059 1.176531501 0.968851777 1 23.61923631 -4.228288124 22.21099379 1.063373684 1.130217716 0.091476163 0.066615163 8061.505515 5400705.667 0.016149164 1.847706113 5.91E-05 4.228288124 0.066844032 LKLS(ph)PSPSSR ddPTM_HeLa_A486_30min_R1 8 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 0 LKLS(0.801)PS(0.194)PS(0.006)SR;LKLS(0.909)PS(0.091)PSSR;LKLS(0.971)PS(0.029)PSSR;LKLS(0.5)PS(0.5)PSSR;LKLS(0.867)PS(0.133)PSSR;LKLS(0.5)PS(0.5)PSSR;LKLS(0.765)PS(0.229)PS(0.006)SR;LKLS(0.714)PS(0.269)PS(0.017)SR ;;;;;;; 164.22 2.32E-07 53296760000 18356220 17447630 10223180 6895400 15828780 16393150 20458410 19365970 12875040 21633610 TRUE FALSE FALSE 17069543.77 16065016.26 14181869.08 16052839.67 13843386.81 14370729.83 15339499.43 14956761.39 13991058.83 16216413.24 1.052609076 0.990663966 0.874537968 0.989913086 0.853665148 0.886184239 0.945924305 0.922322413 0.862771479 1 23.95095142 -4.550751307 4.164805559 0.914584557 1.042506424 0.453499869 0.048046032 0.158586517 6.12329465 0.011796292 0.039609241 2.81E-05 4.550751307 0.127921866 LKLSILYPATTGR ddPTM_HeLa_A485_30min_R1 1 LKLSILYPATTGR 13 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 176.56 3.68E-09 0 293660 446460 351610 195230 408970 354310 468800 509500 213620 268010 FALSE FALSE TRUE 358983.6539 498669.6133 481685.1707 205894.9206 368251.5108 372861.1237 368637.0503 384544.3261 256491.5746 201200.0394 1.784212642 2.478476719 2.394061016 1.023334395 1.830275541 1.853186137 1.83219174 1.911253732 1.274808769 1 17.61827106 -9.197214737 0.108130103 3.96E-11 2.679234749 0.378001064 0.379173999 36.74463568 1.158038093 19.92555374 8.60916019 6.35E-10 9.197214737 2.679234749 LKLSILYPATTGR ddPTM_HeLa_A486_30min_R1 1 LKLSILYPATTGR 13 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 202.25 7.13E-16 0 461290 337990 263040 115920 361820 256820 391660 336800 238590 419990 FALSE FALSE TRUE 428955.9531 311206.4415 364896.1325 269867.6183 316437.1618 225136.1596 293662.5254 260117.9923 259271.1733 314821.7703 1.362535865 0.988516268 1.159056224 0.857207613 1.00513113 0.715122589 0.932789766 0.826238897 0.823549061 1 18.26417578 -1 0.516704803 0.857094106 18.03873004 0.640859545 0.106091583 67.27782674 0.683386752 0.052455913 1264.588177 0.1 1 17.18163594 LKMS(ph)PGR ddPTM_HeLa_A485_30min_R1 5 LKMSPGR 7 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LKMS(1)PGR;LKMS(1)PGR;LKMS(1)PGR;LKMS(1)PGR;LKMS(1)PGR ;;;; 77.677 0.007122 3278737000 4483450 4979010 3848020 4823080 5322460 5445060 6796320 7149000 4043420 6211460 TRUE FALSE FALSE 5480777.985 5561261.908 5271562.727 5086552.648 4792537.194 5730154.922 5344230.711 5395696.541 4854897.306 4663057.335 1.175361483 1.192621387 1.130494941 1.090819238 1.02776716 1.22884076 1.146078705 1.157115633 1.041140384 1 22.15284474 -7.881164617 3.995623836 1.001827818 1.142117497 0.475238454 0.052398325 0.192955889 5.2280028 0.053202376 0.014090125 1.31E-08 7.881164617 0.140289679 LKMS(ph)PGR ddPTM_HeLa_A486_30min_R1 4 LKMSPGR 7 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LKMS(1)PGR;LKMS(1)PGR;LKMS(1)PGR;LKMS(1)PGR ;;; 75.294 0.0080956 3361990000 7691200 6997600 4447520 2488310 7035800 6621400 7929100 7789000 5543800 8739400 TRUE FALSE FALSE 7152086.597 6443084.691 6169718.853 5792911.432 6153304.358 5804518.989 5945155.315 6015614.733 6024341.048 6550997.356 1.091755378 0.983527292 0.941798404 0.884279312 0.939292755 0.886051188 0.907519114 0.918274639 0.919606698 1 22.64328314 -4.297185187 1.599209651 0.917227968 1.148188665 0.72917567 0.031209853 0.438745114 1.135714038 0.008121516 0.15484081 5.04E-05 4.297185187 0.230960697 LKNDMAVPT(ph)PPPPPVPPTK ddPTM_HeLa_A486_30min_R1 1 LKNDMAVPTPPPPPVPPTK 19 1 G3V1P5;Q96RN5-3;Q96RN5-2;Q96RN5 G3V1P5 MED15 Mediator of RNA polymerase II transcription subunit 15 1 0 LKNDMAVPT(1)PPPPPVPPTK 93.966 0.00055772 239480000 395660 318340 195280 134120 326130 364830 396780 401420 287940 437450 TRUE FALSE FALSE 367926.2772 293113.579 270897.6458 312238.138 285223.7344 319820.9839 297501.4473 310025.4289 312898.871 327909.6727 1.12203545 0.893885126 0.826134964 0.95220777 0.869824095 0.97533257 0.907266458 0.945459847 0.954222754 1 18.32293893 -8.125574917 1.357410223 0.999782287 0.928904389 0.056924929 0.074744355 1.713461779 6.641248193 0.070236193 0.021094009 7.49E-09 8.125574917 -0.070877898 LKNDSDLFGLGLEEAGPKES(ph)S(ph)EEGKEGK ddPTM_HeLa_A486_30min_R1 1 LKNDSDLFGLGLEEAGPKESSEEGKEGK 28 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 0 LKNDSDLFGLGLEEAGPKES(1)S(1)EEGKEGK 54.605 0.017372 454550000 94174 76513 52526 61590 83055 62346 90229 89329 53624 126820 TRUE FALSE FALSE 87572.88892 70449.83122 72865.4739 143384.6326 72637.46744 54654.38441 67652.74985 68990.73674 58272.1715 95063.44654 0.921204649 0.741082233 0.76649308 1.508304588 0.764094614 0.574925341 0.711658922 0.725733594 0.612981894 1 16.53660309 -5.978549174 24.99923013 0.702905973 0.974451712 0.233173146 0.223354026 348.1486361 405737.55 0.070536894 0.079975121 1.05E-06 5.978549174 0.271545739 LKNDSDLFGLGLEEAGPKES(ph)SEEGK ddPTM_HeLa_A486_30min_R1 1 LKNDSDLFGLGLEEAGPKESSEEGK 25 2 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 1 0 LKNDSDLFGLGLEEAGPKES(0.787)S(0.213)EEGK 95.435 0.0010274 87156000 84808 58795 20774 71388 36932 103570 135490 109610 47163 229350 TRUE FALSE FALSE 78863.39715 54135.87007 28818.24915 166194.8717 32299.64418 90792.58642 101588.9689 84654.19577 51251.12681 171919.2672 0.458723437 0.314891233 0.16762664 0.966703002 0.187876814 0.528111758 0.5909109 0.492406681 0.298111594 1 17.39137171 -11.24554488 2.390675623 3.129256815 0.44895921 0.36379336 0.220113229 20300919.77 3059230.627 234342767.6 0.05413809 5.68E-12 11.24554488 -2.680297604 LKNDSDLFGLGLEEAGPKES(ph)SEEGKEGK ddPTM_HeLa_A485_30min_R1 1 LKNDSDLFGLGLEEAGPKESSEEGKEGK 28 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 1 0 LKNDSDLFGLGLEEAGPKES(0.939)S(0.061)EEGKEGK 129.13 5.36E-06 405090000 138770 71756 38806 467190 114640 127750 277880 247030 83843 653390 TRUE FALSE FALSE 169638.9077 80147.24001 53161.95425 492711.4067 103226.0391 134438.7925 218508.6679 186445.5052 100669.521 490511.8978 0.345840557 0.163395099 0.10838056 1.004484109 0.210445536 0.274078556 0.445470679 0.38010394 0.205233597 1 18.90392861 -10.16454715 3.461741048 1.000824013 0.352901658 0.397767671 0.24040269 85572597.49 136799748.3 784120.3046 0.061124706 6.85E-11 10.16454715 -0.647922355 LKNDSDLFGLGLEEAGPKES(ph)SEEGKEGK ddPTM_HeLa_A486_30min_R1 1 LKNDSDLFGLGLEEAGPKESSEEGKEGK 28 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 1 0 LKNDSDLFGLGLEEAGPKES(0.835)S(0.165)EEGKEGK 172.4 1.96E-13 230700000 52336 40935 10274 61957 31055 66588 102960 83802 34179 172470 TRUE FALSE FALSE 48667.51666 37691.16152 14252.36795 144239.0271 27159.79232 58373.04958 77198.319 64722.11398 37141.66324 129282.3894 0.376443512 0.291541344 0.110242145 1.115689676 0.210081144 0.451515863 0.597129426 0.500625911 0.287290971 1 16.98016624 -11.26015413 2.272468969 3.169206005 0.444073692 0.289740135 0.263887185 32083689.72 4380757.056 358474827.2 0.06658701 5.49E-12 11.26015413 -2.725132314 LKNGFPHPEPDCNPS(ph)EAASEESNSEIEQEIPVEQK ddPTM_HeLa_A486_30min_R1 1 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 LKNGFPHPEPDCNPS(0.25)EAAS(0.25)EES(0.25)NS(0.25)EIEQEIPVEQK 52.057 0.01246 274960000 27669 28762 14743 14028 29623 29034 38101 35046 23877 44680 TRUE FALSE FALSE 25729.54598 26482.79437 20451.88443 32657.89294 25907.40712 25452.08028 28567.72681 27066.79085 25946.67758 33491.83718 0.768233341 0.790723848 0.610652808 0.975100075 0.773543923 0.759948764 0.852975806 0.808160827 0.774716461 1 15.0315219 -14 0.218076993 2.035994311 0.764997936 0.357939604 0.084846769 170.0771853 1.701269996 77.411552 0.164007358 1.00E-14 14 -1.270996375 LKNGFPHPEPDCNPSEAAS(ph)EES(ph)NSEIEQEIPVEQK ddPTM_HeLa_A485_30min_R1 1 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 2 0 LKNGFPHPEPDCNPS(0.005)EAAS(0.858)EES(0.624)NS(0.513)EIEQEIPVEQK 163.64 8.32E-14 277560000 288020 223290 161820 378880 374320 279400 464380 496650 252150 563920 TRUE FALSE FALSE 352089.0553 249401.8231 221683.9519 399577.255 337051.3865 294028.952 365161.4194 374845.8088 302754.1921 423345.1222 0.83168327 0.589121759 0.523648296 0.943856995 0.796162206 0.694537238 0.86256201 0.885437883 0.715147468 1 18.69147474 -14 0.051947811 1.996433094 0.282531277 0.291914828 0.121824923 645.4569737 2.468630564 86.79651926 18.29023419 1.00E-14 14 -1.713901817 LKNGFPHPEPDCNPSEAAS(ph)EES(ph)NSEIEQEIPVEQK ddPTM_HeLa_A486_30min_R1 1 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 2 0 LKNGFPHPEPDCNPS(0.003)EAAS(0.899)EES(0.601)NS(0.497)EIEQEIPVEQK 138.18 2.04E-06 305440000 180740 189110 73936 104460 173360 210230 289450 266920 152250 271940 TRUE FALSE FALSE 168071.0593 174124.2349 102565.9993 243188.1591 151615.5723 184293.9601 217026.5485 206148.1428 165447.1526 203844.454 0.824506412 0.854201483 0.503158155 1.193008465 0.743780708 0.904091117 1.064667418 1.011301209 0.811634309 1 17.63710918 -5.261174974 24.99999992 0.954553749 0.739979979 0.343664875 0.147629581 29.24236576 2764800.745 0.040140496 0.064336887 5.48E-06 5.261174974 -0.21457377 LKNGFPHPEPDCNPSEAASEES(ph)NSEIEQEIPVEQK ddPTM_HeLa_A485_30min_R1 2 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 LKNGFPHPEPDCNPSEAAS(0.001)EES(0.5)NS(0.5)EIEQEIPVEQK;LKNGFPHPEPDCNPS(0.001)EAAS(0.024)EES(0.487)NS(0.487)EIEQEIPVEQK ; 259.62 1.06E-64 881040000 559364 465486 310252 711280 714440 566896 844550 919850 503720 1104970 TRUE FALSE FALSE 683792.592 519920.5385 425027.1255 750135.4253 643307.845 596577.798 664104.9932 694255.3452 604811.9836 829521.3145 0.824321907 0.626771765 0.512376377 0.904299157 0.775516956 0.719183206 0.800588221 0.836934908 0.729109636 1 19.66191953 -13.99999999 0.118870226 1.843573106 0.617695877 0.366788758 0.103870705 169.3045233 1.306521516 34.20722395 1.061477618 1.00E-14 13.99999999 -1.225877229 LKNGFPHPEPDCNPSEAASEESNS(ph)EIEQEIPVEQK ddPTM_HeLa_A485_30min_R1 3 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 LKNGFPHPEPDCNPS(0.001)EAAS(0.037)EES(0.17)NS(0.793)EIEQEIPVEQK;LKNGFPHPEPDCNPSEAAS(0.017)EES(0.12)NS(0.863)EIEQEIPVEQK;LKNGFPHPEPDCNPS(0.005)EAAS(0.022)EES(0.135)NS(0.839)EIEQEIPVEQK ;; 246.44 1.10E-51 1112740000 457140 356406 257824 519200 547320 483980 691730 796930 415294 837250 TRUE FALSE FALSE 558829.2159 398084.5814 353203.8266 547562.5813 492826.899 509320.4444 543936.2346 601481.668 498639.6965 628538.9834 0.889092372 0.633349071 0.561944185 0.871167256 0.784083266 0.810324352 0.86539777 0.956952049 0.793331376 1 19.2616427 -6.363469168 0.694107931 0.92740759 0.702907749 0.363641093 0.102163386 0.794266585 0.824841233 0.079815226 0.073693916 4.33E-07 6.363469168 -0.224499841 LKNGFPHPEPDCNPSEAASEESNS(ph)EIEQEIPVEQK ddPTM_HeLa_A486_30min_R1 3 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 LKNGFPHPEPDCNPS(0.001)EAAS(0.041)EES(0.177)NS(0.781)EIEQEIPVEQK;LKNGFPHPEPDCNPSEAAS(0.145)EES(0.106)NS(0.748)EIEQEIPVEQK;LKNGFPHPEPDCNPSEAAS(0.001)EES(0.062)NS(0.937)EIEQEIPVEQK ;; 269.15 1.69E-65 1053690000 580940 669950 293837 300247 649220 706990 958680 843310 491960 960480 TRUE FALSE FALSE 540219.106 616860.7221 407618.5556 698990.1896 567788.7739 619768.7619 718808.1241 651306.7223 534603.4889 719969.5563 0.75033604 0.85678723 0.566160822 0.970860759 0.788628865 0.860826345 0.998386832 0.90463092 0.742536242 1 19.45757638 -5.285193578 24.99926841 0.889586783 0.737663891 0.360418135 0.103570328 900.2468368 947430.937 0.028644335 0.042510487 5.19E-06 5.285193578 -0.151922892 LKPFFEGMSQSS(ph)SQTEIGSLNSK ddPTM_HeLa_A486_30min_R1 1 LKPFFEGMSQSSSQTEIGSLNSK 23 1 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 LKPFFEGMS(0.065)QS(0.065)S(0.29)S(0.29)QT(0.29)EIGSLNSK 50.144 0.01898 69063000 38613 40107 26053 23606 40644 39158 49530 43369 28607 54629 TRUE FALSE FALSE 35906.4281 36928.77525 36141.41932 54955.96098 35546.05053 34327.08409 37137.07013 33494.82544 31086.67779 40949.54282 0.87684564 0.901811662 0.882584196 1.342040892 0.868045113 0.83827759 0.906898284 0.817953587 0.759145906 1 15.32155972 -5.95918765 24.9999997 0.855443093 1.000270458 0.18740341 0.137877666 253.6707588 155387.4254 0.043865256 0.049738469 1.10E-06 5.95918765 0.144827365 LKPGGVGAPSSS(ph)SPSPSPSAR ddPTM_HeLa_A485_30min_R1 1 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPSS(0.003)S(0.622)S(0.374)PS(0.002)PSPSAR 134 3.77E-07 1033300000 544160 499260 555540 653800 639240 485870 704810 487100 551660 945470 TRUE FALSE FALSE 665206.5147 557644.114 761057.3639 689515.4385 575595.0211 511309.4019 554221.5857 367637.9613 662373.1019 709781.7291 0.937198701 0.785655774 1.072241413 0.971447151 0.810946517 0.720375548 0.78083383 0.517959178 0.933206752 1 19.43701591 -5.894525869 4.521290706 0.760270224 0.939086068 0.200529303 0.138108221 0.291424397 10.30621211 0.042508023 0.04865369 1.27E-06 5.894525869 0.178815844 LKPGGVGAPSSSS(ph)PS(ph)PSPSARPGPPPSEEAMDFR ddPTM_HeLa_A485_30min_R1 1 LKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFR 34 2 Q92797 Q92797 SYMPK Symplekin 2 0 LKPGGVGAPS(0.027)S(0.096)S(0.421)S(0.459)PS(0.483)PS(0.483)PS(0.03)ARPGPPPSEEAMDFR 71.575 0.0006354 287580000 63664 82199 58183 69160 68930 68409 98841 96372 62168 85846 TRUE FALSE FALSE 77825.83716 91811.45801 79707.3129 72938.03568 62067.08717 71990.78946 77722.81289 72736.61589 74644.54736 64446.17208 1.207609927 1.424622364 1.236804458 1.131766765 0.963084155 1.117068511 1.206011317 1.128641369 1.158246409 1 15.97580705 -5.148219953 3.318665356 1.104757975 1.318095805 0.527803248 0.08366559 0.193519028 3.984152449 0.023727396 0.044868935 7.11E-06 5.148219953 0.21333783 LKPGGVGAPSSSS(ph)PSPS(ph)PSARPGPPPSEEAMDFR ddPTM_HeLa_A485_30min_R1 1 LKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFR 34 2 Q92797 Q92797 SYMPK Symplekin 2 0 LKPGGVGAPS(0.005)S(0.022)S(0.133)S(0.838)PS(0.063)PS(0.934)PS(0.004)ARPGPPPSEEAMDFR 143.17 1.60E-09 563930000 140720 210930 154320 144270 164530 162940 180050 188000 129640 161450 TRUE FALSE FALSE 172022.6785 235596.4287 211409.3898 152151.1048 148148.8155 171471.2864 141580.8466 141892.7052 155657.5589 121203.4863 1.419288205 1.94380901 1.744251723 1.255336043 1.222314804 1.414738897 1.1681252 1.170698217 1.28426635 1 16.88707167 -5.272924091 7.190891668 1.229346766 1.727443818 0.672752176 0.154861336 0.080407527 26.43269364 0.041597523 0.065106707 5.33E-06 5.272924091 0.498097051 LKPGGVGAPSSSS(ph)PSPSPSAR ddPTM_HeLa_A485_30min_R1 3 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPS(0.001)S(0.016)S(0.312)S(0.668)PS(0.001)PSPSAR;LKPGGVGAPS(0.02)S(0.161)S(0.266)S(0.502)PS(0.05)PS(0.002)PSAR;LKPGGVGAPSS(0.026)S(0.238)S(0.728)PS(0.007)PSPSAR ;; 182.23 1.94E-19 2708670000 1539440 1246670 1303610 1978310 1731440 1342270 1919990 1685190 1549090 2843480 TRUE FALSE FALSE 1881883.117 1392457.212 1785869.587 2086380.066 1559051.754 1412549.182 1509768.452 1271894.51 1859978.154 2134652.766 0.881587463 0.652310874 0.836608939 0.977386158 0.730353797 0.661723164 0.707266528 0.595832039 0.871325858 1 21.02556998 -3.932115637 16.39061315 0.768867021 2.342785865 0.042309063 0.131253038 6934672.627 30615946.44 0.032849582 375430007.8 0.000116919 3.932115637 1.573918844 LKPGGVGAPSSSS(ph)PSPSPSAR ddPTM_HeLa_A486_30min_R1 3 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPSS(0.005)S(0.06)S(0.808)PS(0.128)PSPSAR;LKPGGVGAPS(0.002)S(0.007)S(0.093)S(0.43)PS(0.43)PS(0.034)PS(0.003)AR;LKPGGVGAPS(0.001)S(0.014)S(0.048)S(0.887)PS(0.048)PS(0.001)PSAR ;; 175.76 1.49E-14 3837440000 2250250 2429410 1614800 590450 2015370 2341890 2345460 2506310 1990050 2446100 TRUE FALSE FALSE 2092519.095 2236894.704 2240093.806 1374597.44 1762583.502 2052971.422 1758601.1 1935677.925 2162549.136 1833580.639 1.141220109 1.219959819 1.221704548 0.749679295 0.961279512 1.11965156 0.959107586 1.055681918 1.179413161 1 20.80623228 LKPGGVGAPSSSS(ph)PSPSPSARPGPPPSEEAMDFR ddPTM_HeLa_A485_30min_R1 4 LKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFR 34 2 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPS(0.002)S(0.008)S(0.036)S(0.77)PS(0.147)PS(0.029)PS(0.008)ARPGPPPS(0.001)EEAMDFR;LKPGGVGAPS(0.005)S(0.024)S(0.15)S(0.784)PS(0.035)PS(0.001)PSARPGPPPSEEAMDFR;LKPGGVGAPS(0.009)S(0.056)S(0.385)S(0.533)PS(0.016)PS(0.001)PSARPGPPPSEEAMDFR;LKPGGVGAPSS(0.017)S(0.119)S(0.846)PS(0.017)PSPSARPGPPPSEEAMDFR ;;; 237.84 4.41E-51 5532920000 1136032 1731560 1083200 956465 1091387 1477250 1523250 1880910 1027094 1113100 TRUE FALSE FALSE 1388738.399 1934050.879 1483920.756 1008714.261 982724.6782 1554596.526 1197795.194 1419613.873 1233222.345 835624.6551 1.661916496 2.314497146 1.775822131 1.207137983 1.176036002 1.8604005 1.43341294 1.698865471 1.47580895 1 19.67249553 -1.00000096 0.048123804 2.20E-06 4.435314062 0.33028866 0.300060767 700.6967973 2.555559734 57.10301456 234.3344528 0.099999779 1.00000096 4.435311863 LKPGGVGAPSSSS(ph)PSPSPSARPGPPPSEEAMDFR ddPTM_HeLa_A486_30min_R1 2 LKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFR 34 2 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPS(0.003)S(0.021)S(0.129)S(0.826)PS(0.021)PSPSARPGPPPSEEAMDFR;LKPGGVGAPS(0.003)S(0.015)S(0.091)S(0.769)PS(0.121)PS(0.002)PSARPGPPPSEEAMDFR ; 192.06 1.10E-21 3677100000 728620 573280 322924 135767 409659 460918 503580 519580 467922 690070 TRUE FALSE FALSE 677547.5006 527851.205 447968.821 316072.4373 358275.7483 404054.6234 377578.9577 401282.9764 508481.8557 517271.9804 1.309847674 1.020451957 0.866021818 0.611037229 0.69262547 0.781126059 0.7299428 0.775767858 0.983006764 1 18.98056352 -2.163581278 8.216971351 0.855179336 1.035646057 0 0.196207075 0 0 0.047922997 0 0.006861495 2.163581278 0.180466721 LKPGYLEATVDWFR ddPTM_HeLa_A486_30min_R1 1 LKPGYLEATVDWFR 14 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 0 64.675 0.03731 8725000 11792 13260 10016 9361.3 16428 12612 14908 16134 12879 20595 FALSE FALSE TRUE 10965.44169 12209.22931 13894.46344 21793.57949 14367.44705 11056.05967 11177.86072 12460.6404 13995.36209 15437.87795 0.710294623 0.790861888 0.90002418 1.411695284 0.930662045 0.716164469 0.724054223 0.807147229 0.906559965 1 13.91418684 -6.020808667 24.46988631 0.813322506 0.966991898 0.083676057 0.189776027 1374.897332 1616804.391 0.067282335 0.068054858 9.53E-07 6.020808667 0.153669392 LKPQLLQGVYAMGFNRPSK ddPTM_HeLa_A486_30min_R1 1 LKPQLLQGVYAMGFNRPSK 19 2 F6QDS0;Q9NUU7;H3BTB3;H3BMQ5;H3BN59;H3BQK0;Q9UMR2 F6QDS0 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 0 96.391 0.00046148 22403000 89136 109740 66983 37358 107170 104870 128760 114540 94874 125050 FALSE FALSE TRUE 82888.0267 101043.8027 92920.61147 86971.31197 93727.73928 91932.20564 96542.88612 88461.74239 103097.7547 93736.66606 0.884264719 1.077953878 0.991294179 0.927825958 0.999904767 0.980749684 1.029937272 0.943726144 1.099865816 1 16.51632586 -7.756230677 24.99985295 1.049932907 0.983821187 0.201163936 0.055635232 188.7727699 906073.608 0.037763607 0.013308861 1.75E-08 7.756230677 -0.06611172 LKPSASFGS(ph)PVQSEALAPDSMSHPR ddPTM_HeLa_A486_30min_R1 2 LKPSASFGSPVQSEALAPDSMSHPR 25 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 LKPS(0.152)AS(0.152)FGS(0.692)PVQS(0.004)EALAPDSMSHPR;LKPS(0.017)AS(0.013)FGS(0.969)PVQSEALAPDSMSHPR ; 133.36 2.26E-06 355730000 484200 349940 280658 181677 490570 384680 532960 485960 284245 515976 TRUE FALSE FALSE 450260.0804 322209.4799 389336.2939 422953.2374 429038.1362 337222.0927 399607.7709 375317.5164 308883.5855 386772.2512 1.164147839 0.833072897 1.006629335 1.093545972 1.109278483 0.871888021 1.033186248 0.970383773 0.798618785 1 18.56112477 -7.535070819 24.08146139 0.894373251 1.009043976 0.158806899 0.105800253 271.1121289 535475.0035 0.069052475 0.026146353 2.92E-08 7.535070819 0.114670725 LKPVHGLIFLFK ddPTM_HeLa_A486_30min_R1 2 LKPVHGLIFLFK 12 1 Q5LJA5;Q5LJA9;Q9Y5K5-2;Q9Y5K5-4;Q9Y5K5-3;Q9Y5K5;Q5LJB0 Q5LJA5 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 0 0 ; ; 120.15 0.00051389 45277000 98721 105187 66911 65031 102782 115590 164284 132816 105122 181153 FALSE FALSE TRUE 91801.1677 96851.59904 92820.73114 151395.4545 89890.12316 101329.681 123178.4056 102576.6962 114234.0596 135791.1097 0.676046966 0.713239617 0.683555288 1.114914333 0.661973552 0.746217343 0.907116864 0.755400677 0.841248443 1 17.0510295 -13.98308359 0.029145193 2.144926499 1.61E-06 0.240775391 0.126789353 2518.744211 5.531561983 313.4149071 130.3943309 1.04E-14 13.98308359 -2.144924887 LKQLMEQDASSS(ph)PSAQVIGLK ddPTM_HeLa_A485_30min_R1 2 LKQLMEQDASSSPSAQVIGLK 21 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LKQLMEQDAS(0.001)S(0.209)S(0.781)PS(0.009)AQVIGLK;LKQLMEQDAS(0.019)S(0.106)S(0.875)PSAQVIGLK ; 149.73 6.76E-10 565840000 414970 560120 349620 313740 595860 706790 914710 1365620 452350 482740 TRUE FALSE FALSE 507278.6449 625621.1616 478958.9869 330878.8218 536534.0862 743796.4315 719274.736 1030699.554 543132.4958 362401.8022 1.399768549 1.726319124 1.321624186 0.913016491 1.480495083 2.052408203 1.984743817 2.844079548 1.498702525 1 18.4672306 -6.190398181 4.704880195 1.998419167 1.350156016 0.200678063 0.480260703 0.28710058 12.20117024 0.158718848 0.157388313 6.45E-07 6.190398181 -0.648263151 LKQLMEQDASSS(ph)PSAQVIGLK ddPTM_HeLa_A486_30min_R1 1 LKQLMEQDASSSPSAQVIGLK 21 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LKQLMEQDAS(0.006)S(0.16)S(0.827)PS(0.006)AQVIGLK 117.82 1.72E-05 164310000 199570 140140 99998 82153 186750 132880 209000 226500 104170 240310 TRUE FALSE FALSE 185581.1736 129034.796 138719.9036 191256.3358 163326.0736 116486.6166 156705.9894 174930.8945 113199.5395 180134.8118 1.030234921 0.716323484 0.770089369 1.061740004 0.906688007 0.646663548 0.869937287 0.971110984 0.628415676 1 17.45871749 LKQPIGQIPLES(ph)SPPVGLSIEEVER ddPTM_HeLa_A485_30min_R1 2 LKQPIGQIPLESSPPVGLSIEEVER 25 1 Q6V0I7-2;Q6V0I7-3;Q6V0I7 Q6V0I7-2 FAT4 Protocadherin Fat 4 1 0 LKQPIGQIPLES(0.558)S(0.442)PPVGLSIEEVER;LKQPIGQIPLES(0.635)S(0.365)PPVGLSIEEVER ; 158.97 1.52E-10 329810000 310840 313280 193276 350580 208719 328440 392800 459320 309830 595880 TRUE FALSE FALSE 379985.2856 349915.3708 264776.8353 369731.2977 187938.2035 345636.6105 308875.0711 346671.0498 372010.0391 447338.0824 0.849436479 0.782216817 0.591894242 0.826514246 0.420125652 0.77265188 0.690473455 0.774964313 0.831608248 1 18.77100606 -8.013668191 1.245147459 0.998148406 0.698522532 0.369255539 0.118937058 0.523789131 1.825155752 0.11111095 0.034493585 9.69E-09 8.013668191 -0.299625874 LKQPIGQIPLES(ph)SPPVGLSIEEVER ddPTM_HeLa_A486_30min_R1 1 LKQPIGQIPLESSPPVGLSIEEVER 25 1 Q6V0I7-2;Q6V0I7-3;Q6V0I7 Q6V0I7-2 FAT4 Protocadherin Fat 4 1 0 LKQPIGQIPLES(0.658)S(0.341)PPVGLS(0.002)IEEVER 94.261 0.0012306 159200000 122390 137350 117840 45513 188830 160780 143270 154010 156570 208270 TRUE FALSE FALSE 113811.093 126465.8858 163470.8039 105956.5641 165145.1806 140944.5983 107422.3306 118945.285 170141.6137 156117.8364 0.729007624 0.810066862 1.04709883 0.678696083 1.057823913 0.902809068 0.688084931 0.76189427 1.089828155 1 17.25227585 -14 0.156312193 1.547506988 0.817719789 0.106713025 0.14561396 359.2754077 3.263733839 60.17207926 0.666102592 1.00E-14 14 -0.729787199 LKQPIGQIPLESS(ph)PPVGLSIEEVER ddPTM_HeLa_A485_30min_R1 1 LKQPIGQIPLESSPPVGLSIEEVER 25 1 Q6V0I7-2;Q6V0I7-3;Q6V0I7 Q6V0I7-2 FAT4 Protocadherin Fat 4 1 0 LKQPIGQIPLES(0.068)S(0.931)PPVGLSIEEVER 89.659 0.0016779 213390000 44546 49969 27882 47440 38655 54336 59630 61445 44525 85905 TRUE FALSE FALSE 54455.10402 55812.43988 38196.71207 50031.52708 34806.37247 57180.94894 46889.56337 46375.51741 53460.75909 64490.46446 0.844390011 0.86543709 0.592284648 0.775797282 0.539713472 0.886657422 0.727077464 0.719106581 0.828971531 1 15.97679824 -8.084561793 3.271559478 0.999832712 0.741642479 0.352506965 0.105861739 0.391164576 9.719961923 0.100346843 0.026645705 8.23E-09 8.084561793 -0.258190233 LKQSMWSLLTALSGK ddPTM_HeLa_A485_30min_R1 1 LKQSMWSLLTALSGK 15 1 E9PHA2;Q15003;Q15003-2;H7C415 E9PHA2 NCAPH Condensin complex subunit 2 0 0 102.28 0.0010004 1429400 5495.4 6095 4642.2 3292 6368.7 5357.6 10328 10784 2506.3 4661.6 FALSE FALSE TRUE 6717.832771 6807.757231 6359.542958 3471.833624 5734.609866 5638.115652 8121.338428 8139.207091 3009.291421 3499.54891 1.919628199 1.945324213 1.817246485 0.992080326 1.638671158 1.611097829 2.320681504 2.325787494 0.859908376 1 11.77295326 -7.781558402 24.98134837 0.929952922 1.801221781 0.492401175 0.361544363 258.751994 321277.6302 0.381391208 0.09898095 1.65E-08 7.781558402 0.871268859 LKS(ph)DERPVHIK ddPTM_HeLa_A485_30min_R1 3 LKSDERPVHIK 11 2 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 LKS(1)DERPVHIK;LKS(1)DERPVHIK;LKS(1)DERPVHIK ;; 151.56 2.54E-07 3641480000 5647200 3822080 2063080 8087800 4610820 4689860 7782500 6664800 3037450 9087400 TRUE FALSE FALSE 6903400.157 4269039.008 2826299.144 8529616.035 4151750.571 4935413.818 6119705.298 5030247.35 3647038.354 6822078.421 1.011920375 0.625768094 0.414287109 1.250295805 0.608575615 0.723447242 0.897044115 0.737348216 0.534593437 1 22.70177991 -4.242059889 23.16122861 0.750158664 1.011921037 0.10083973 0.230175511 3743.225557 4473490.718 0.055629648 1.757206571 5.73E-05 4.242059889 0.261762373 LKS(ph)DERPVHIK ddPTM_HeLa_A486_30min_R1 1 LKSDERPVHIK 11 2 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 LKS(1)DERPVHIK 166.9 2.20E-08 1833300000 4586200 3484800 1290700 2162500 3034600 4279500 5477100 4899300 2703900 6846000 TRUE FALSE FALSE 4264731.063 3208651.757 1790493.606 5034409.287 2653972.171 3751538.801 4106671.649 3783836.341 2938276.229 5131717.04 0.831053433 0.625258901 0.348907314 0.981037974 0.517170403 0.731049427 0.80025294 0.737343137 0.572571754 1 22.29101019 -14 0.348102959 4.605234244 0.671684092 0.23497589 0.169374545 629.64082 5.206920973 1693.069152 0.128863482 1.00E-14 14 -3.933550152 LKS(ph)EDGVEGDLGETQSR ddPTM_HeLa_A485_30min_R1 11 LKSEDGVEGDLGETQSR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(0.996)EDGVEGDLGET(0.002)QS(0.002)R;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR ;;;;;;;;;; 284.9 3.39E-60 13143301000 8662123 6559132 4399227 12028420 7932783 7386317 11544080 8592940 4716573 13143010 TRUE FALSE FALSE 10588982.38 7326165.431 6026684.134 12685502.13 7142967.271 7773053.137 9077593.002 6485507.992 5663145.938 9866699.486 1.073204104 0.742514297 0.610810549 1.285688507 0.723946977 0.787806819 0.920023257 0.657312813 0.573965585 1 23.23413614 -7.260783296 24.99215367 0.711729397 0.868567335 0.072791883 0.208163208 140.9508279 5369487.968 0.10259418 0.05468744 5.49E-08 7.260783296 0.156837938 LKS(ph)EDGVEGDLGETQSR ddPTM_HeLa_A486_30min_R1 8 LKSEDGVEGDLGETQSR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LKS(0.898)EDGVEGDLGET(0.083)QS(0.019)R;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR ;;;;;;; 245.36 6.72E-43 11719850000 10071590 7806630 4085544 4754513 7658570 9755370 12679960 11655650 7498030 18087490 TRUE FALSE FALSE 9365623.551 7188004.208 5667576.051 11068746.54 6697960.737 8551851.635 9507299.893 9001912.936 8147965.278 13558264.77 0.690768598 0.530156648 0.418016328 0.816383713 0.494013124 0.630748239 0.701218043 0.663942849 0.600959298 1 23.69266921 -14 0.231749545 3.104523204 0.571941378 0.538095941 0.107403052 123.202918 1.233134683 121.565851 0.179850788 1.00E-14 14 -2.532581825 LKS(ph)IEER ddPTM_HeLa_A485_30min_R1 3 LKSIEER 7 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 LKS(1)IEER;LKS(1)IEER;LKS(1)IEER ;; 138.25 0.00075296 880590000 2410660 2260860 1744330 3186440 2781630 2173870 3301130 2861070 1609490 2897730 TRUE FALSE FALSE 2946903 2525247.91 2389630.255 3360507.149 2504681.15 2287690.472 2595816.608 2159388.097 1932499.88 2175379.24 1.354661728 1.160831116 1.098489041 1.544791403 1.151376783 1.051628346 1.193270838 0.992649032 0.888350796 1 21.0528355 -6.873162771 0.978960471 0.943756746 1.261285663 0.474822981 0.13112287 0.529134142 0.971476711 0.105616905 0.054971489 1.34E-07 6.873162771 0.317528917 LKS(ph)IEER ddPTM_HeLa_A486_30min_R1 3 LKSIEER 7 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 LKS(1)IEER;LKS(1)IEER;LKS(1)IEER ;; 135.86 0.00067568 805430000 2096250 1800460 1005890 845960 1765700 1933720 2488570 2383950 1526340 2783960 TRUE FALSE FALSE 1949313.7 1657784.992 1395397.547 1969437.632 1544229.442 1695157.287 1865903.465 1841176.626 1658644.38 2086838.295 0.934099065 0.794400312 0.668665871 0.943742329 0.739985194 0.812308884 0.894129396 0.882280448 0.794812125 1 20.99288738 -11.29968221 0.285617053 1.228683677 0.810931379 0.274523202 0.082477353 52.50556452 1.967779467 7.726183397 0.095046409 5.02E-12 11.29968221 -0.417752299 LKS(ph)IS(ph)REPS(ph)PALGPNLDGSGLLPR ddPTM_HeLa_A486_30min_R1 1 LKSISREPSPALGPNLDGSGLLPR 24 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 3 0 LKS(1)IS(1)REPS(1)PALGPNLDGSGLLPR 90.944 0.0026112 41155000 12143 15614 11933 6435 19202 17407 17595 18216 13551 18900 TRUE FALSE FALSE 11291.83841 14376.68977 16553.77718 14981.00521 16793.50611 15259.50132 13192.5449 14068.61445 14725.61159 14167.31698 0.797034359 1.014778578 1.168448281 1.057434179 1.185369547 1.077091826 0.931195717 0.993033082 1.039407222 1 13.79027894 -9.870770424 13.67733042 0.999996507 1.035844988 0.003448353 0.10600941 0 0 0.107425267 0.026054454 1.35E-10 9.870770424 0.035848481 LKS(ph)ISREPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_HeLa_A485_30min_R1 1 LKSISREPSPALGPNLDGSGLLPRPIFYCSFPTR 34 3 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 0 LKS(0.924)IS(0.163)REPS(0.913)PALGPNLDGSGLLPRPIFYCSFPTR 65.609 0.0021789 221280000 20036 32210 24696 26519 46639 47837 73156 89141 22421 43340 TRUE FALSE FALSE 24492.93908 35976.67931 33832.07809 27967.66582 41995.4574 50341.67135 57525.62297 67279.02998 26920.68904 32536.13561 0.752791892 1.105745308 1.039830866 0.859587818 1.290732799 1.547254165 1.768053332 2.067824857 0.827408927 1 14.98975529 -5.970003897 3.439451833 1.525051127 0.959659961 0.304532693 0.34657893 0.262732844 6.539683336 0.112864644 0.124842459 1.07E-06 5.970003897 -0.565391167 LKS(ph)LPR ddPTM_HeLa_A486_30min_R1 1 LKSLPR 6 1 A6NM36 A6NM36 LRRC30 Leucine-rich repeat-containing protein 30 1 0 LKS(1)LPR 69.423 0.014078 841970000 692450 682510 460370 260910 691110 705020 775590 783930 584460 840900 TRUE FALSE FALSE 643912.8308 628425.4219 638637.5931 607411.6657 604424.5395 618041.8005 581529.1786 605446.2521 635121.4634 630333.1667 1.021543629 0.996973434 1.013174662 0.963635896 0.958896932 0.980500207 0.922574298 0.960517841 1.007596454 1 19.26575505 -5.262084361 24.99999923 0.966818922 1.009204863 0.379368888 0.023105759 57.00594582 2209642.915 0.006412433 0.010184232 5.47E-06 5.262084361 0.042385941 LKS(ph)PSMAVPSPGWVAS(ph)PK ddPTM_HeLa_A486_30min_R1 1 LKSPSMAVPSPGWVASPK 18 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 2 0 LKS(0.88)PS(0.119)MAVPS(0.001)PGWVAS(0.999)PK 72.566 0.0063937 203850000 223920 168470 79115 134610 144430 241810 312690 268050 143350 423380 TRUE FALSE FALSE 208224.3643 155119.8236 109750.4468 313378.8828 126314.2426 211977.9407 234451.6547 207020.8665 155775.6934 317362.8923 0.6561081 0.488777445 0.345820036 0.987446518 0.39801201 0.667935496 0.738749427 0.652315918 0.490844069 1 18.27577392 -13.99999993 0.29253878 4.0977415 0.582924103 0.306401006 0.176945663 314.4758242 2.956654778 595.6889521 0.183514744 1.00E-14 13.99999993 -3.514817397 LKS(ph)PSMAVPSPGWVASPK ddPTM_HeLa_A486_30min_R1 1 LKSPSMAVPSPGWVASPK 18 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 LKS(0.898)PS(0.102)MAVPSPGWVASPK 103.71 8.80E-05 272450000 242450 240490 149550 107210 263580 303110 331180 321870 242870 398820 TRUE FALSE FALSE 225455.507 221432.6966 207459.7651 249590.2981 230519.3386 265715.37 248315.2611 248587.2274 263922.1671 298952.8761 0.754150654 0.740694318 0.693954739 0.834881742 0.771089215 0.88882025 0.830616733 0.831526462 0.88282197 1 18.18955857 -8.364659189 0.038063149 1.788191528 6.44E-10 0.791029151 0.038348422 60.28881515 1.094698688 27.57705123 23.42846429 4.32E-09 8.364659189 -1.788191527 LKS(ph)PSQKQDGGTAPVASASPK ddPTM_HeLa_A485_30min_R1 3 LKSPSQKQDGGTAPVASASPK 21 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LKS(0.75)PS(0.25)QKQDGGTAPVASASPK;LKS(0.603)PS(0.329)QKQDGGT(0.068)APVASASPK;LKS(0.882)PS(0.118)QKQDGGTAPVASASPK ;; 138.54 1.35E-07 2832100000 2011440 1572980 942948 2164900 2100020 2519880 3856260 4664380 1573310 2814750 TRUE FALSE FALSE 2458877.889 1756926.328 1291783.705 2283163.005 1890934.635 2651817.02 3032338.548 3520433.492 1889058.886 2113084.627 1.16364383 0.831451001 0.611326063 1.0804882 0.894869335 1.254950695 1.435029393 1.666016329 0.893981652 1 21.01091912 -6.29790483 4.380045465 1.308829547 0.901864933 0.303262443 0.245306555 0.229920694 10.33829986 0.087034011 0.078588317 5.04E-07 6.29790483 -0.406964613 LKS(ph)PSQKQDGGTAPVASASPK ddPTM_HeLa_A486_30min_R1 3 LKSPSQKQDGGTAPVASASPK 21 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LKS(0.953)PS(0.047)QKQDGGTAPVASASPK;LKS(0.992)PS(0.008)QKQDGGTAPVASASPK;LKS(0.851)PS(0.12)QKQDGGT(0.029)APVASASPK ;; 231.25 1.38E-36 1923990000 3122400 2182050 896690 1448410 2315090 2823170 3865720 3831510 1717020 4475810 TRUE FALSE FALSE 2903535.884 2009136.411 1243912.382 3371971.679 2024709.825 2474875.989 2898475.969 2959158.814 1865852.676 3355038.043 0.865425622 0.598841618 0.370759546 1.005047226 0.603483418 0.737659591 0.863917467 0.882004548 0.556134581 1 21.67789769 -6.028490467 0.913134338 0.813293015 0.651799687 0.089972142 0.190103139 1.471450313 2.678145309 0.104613204 0.123535639 9.37E-07 6.028490467 -0.161493328 LKS(ph)QIVK ddPTM_HeLa_A485_30min_R1 1 LKSQIVK 7 1 A0A0G2JKJ3 A0A0G2JKJ3 1 0 LKS(1)QIVK 40.778 0.037631 1588700000 1104000 878130 652570 1185000 1209600 884760 1704100 1649000 1017800 1680500 TRUE FALSE FALSE 1349580.991 980819.6648 893982.7987 1249733.549 1089167.977 931084.6655 1340005.114 1244580.164 1222063.124 1261582.277 1.069752655 0.777452 0.70862029 0.990608042 0.863334874 0.738029285 1.062162285 0.986523184 0.96867493 1 20.26680287 -6.775348142 24.99995754 1.003217038 0.853791197 0.316695503 0.105218421 297.0341387 533891.6171 0.044106807 0.029905204 1.68E-07 6.775348142 -0.14942584 LKS(ph)VEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_A485_30min_R1 3 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 2 0 LKS(1)VEDEMDS(1)PGEEPFYTGQGR;LKS(1)VEDEMDS(1)PGEEPFYTGQGR;LKS(1)VEDEMDS(1)PGEEPFYTGQGR ;; 130.41 1.99E-06 132480000 174936.8 167202 105067.7 251441.9 185663.3 165049.8 234392 202069 109967.6 253606 TRUE FALSE FALSE 213850.8876 186754.8194 143936.6145 265177.5343 167178.0099 173691.5523 184312.2344 152511.2609 132037.0886 190386.6915 1.123244939 0.980923708 0.756022458 1.392836507 0.878097144 0.912309316 0.968094109 0.801060514 0.69352058 1 17.53857311 -6.662373384 1.301742732 0.825265426 1.028101631 0.178277364 0.1724905 0.77126689 2.657863846 0.102903162 0.065196617 2.18E-07 6.662373384 0.202836205 LKS(ph)VEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_A486_30min_R1 2 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 2 0 LKS(1)VEDEMDS(1)PGEEPFYTGQGR;LKS(1)VEDEMDS(1)PGEEPFYTGQGR ; 99.319 0.00077814 208708000 241840 184379 98259 92826 173297 224760 268680 266660 168115 356960 TRUE FALSE FALSE 224888.2649 169768.1365 136307.5163 216103.6192 151560.4743 197031.3964 201453.4222 205947.3391 182687.3436 267574.8926 0.840468486 0.634469606 0.509418186 0.807637881 0.56642263 0.736359807 0.752886118 0.769681106 0.682752189 1 18.02958322 -10.48143149 0.312107558 1.227718683 0.666865874 0.454320481 0.099118744 19.3954293 1.203146267 3.585923442 0.098297811 3.30E-11 10.48143149 -0.560852809 LKS(ph)VEDEMDSPGEEPFYTGQGR ddPTM_HeLa_A486_30min_R1 2 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 LKS(1)VEDEMDSPGEEPFYTGQGR;LKS(1)VEDEMDSPGEEPFYTGQGR ; 156.73 2.01E-10 184254000 131001 119810 59302 54708 101563 119892 151386 136831 95109 206778 TRUE FALSE FALSE 121818.5064 110315.8193 82265.32256 127362.9888 88824.0215 105100.944 113507.6216 105677.5683 103353.1247 154999.4429 0.785928672 0.711717521 0.530745924 0.821699655 0.573060263 0.678073044 0.732309868 0.681793214 0.666796749 1 17.2419035 -10.71784415 2.634775625 1.056913808 0.684581593 0.562598329 0.082798429 27789291.6 22217656 10421687.3 0.020148636 1.91E-11 10.71784415 -0.372332215 LKSDNENDGYVPDVEMS(ph)DSESEASEKK ddPTM_HeLa_A486_30min_R1 1 LKSDNENDGYVPDVEMSDSESEASEKK 27 2 Q6IE81;Q6IE81-2 Q6IE81 JADE1 Protein Jade-1 1 0 LKSDNENDGYVPDVEMS(0.854)DS(0.046)ES(0.046)EAS(0.053)EKK 81.566 0.0026808 292600000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LKSEDGVEGDLGET(ph)QSR ddPTM_HeLa_A486_30min_R1 2 LKSEDGVEGDLGETQSR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LKS(0.181)EDGVEGDLGET(0.819)QSR;LKS(0.094)EDGVEGDLGET(0.453)QS(0.453)R ; 265.73 1.58E-51 1120720000 1184380 856630 428820 481160 825970 1034520 1478720 1349530 827520 2058950 TRUE FALSE FALSE 1101361.078 788747.519 594870.5882 1120164.796 722369.1407 906891.4406 1108728.616 1042271.479 899250.0999 1543375.518 0.713605383 0.511053538 0.38543477 0.725788885 0.468044965 0.587602583 0.718379035 0.675319432 0.582651525 1 20.5576577 -11.97621527 0.234606778 1.781967217 0.536133112 0.565991421 0.107586926 40.42739584 0.944236334 15.77374738 0.187579847 1.06E-12 11.97621527 -1.245834105 LKSIFR ddPTM_HeLa_A486_30min_R1 1 LKSIFR 6 1 E9PGK7;O94759-3;O94759-2;O94759 E9PGK7 TRPM2 Transient receptor potential cation channel subfamily M member 2 0 0 98.133 0.01474 56280000 187250 110300 71014 33787 108310 75939 119710 106850 66348 154000 FALSE FALSE TRUE 174124.742 101559.4263 98512.52262 78657.8435 94724.74985 66570.41827 89757.29184 82522.58752 72099.09806 115437.3976 1.508391089 0.879779243 0.853384818 0.681389611 0.820572464 0.576679825 0.777540846 0.714868745 0.624573141 1 16.81675116 -3.528010931 1.19204077 0.729150474 4.379752838 0.793618382 0.114460948 2.932167106 0.988598373 0.031403182 20.2826398 0.000296476 3.528010931 3.650602364 LKSVEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_A485_30min_R1 3 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 LKSVEDEMDS(1)PGEEPFYTGQGR;LKSVEDEMDS(1)PGEEPFYTGQGR;LKSVEDEMDS(1)PGEEPFYTGQGR ;; 214.61 2.35E-28 2026240000 1011570 1333650 926230 1074520 1593120 1816510 2394320 3074420 1298360 1643590 TRUE FALSE FALSE 1236590.257 1489608.766 1268881.021 1133218.307 1434503.379 1911619.655 1882753.972 2320413.674 1558928.943 1233873.261 1.002202005 1.207262377 1.028372249 0.918423587 1.162601885 1.549283638 1.525889272 1.880593208 1.263443331 1 20.23476278 -6.154374414 4.066297706 1.503864416 1.049668827 0.411766198 0.224368073 0.202689888 5.838616821 0.07356034 0.073525508 7.01E-07 6.154374414 -0.454195589 LKSVEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_A486_30min_R1 4 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 LKSVEDEMDS(1)PGEEPFYTGQGR;LKSVEDEMDS(1)PGEEPFYTGQGR;LKS(0.001)VEDEMDS(0.999)PGEEPFYTGQGR;LKSVEDEMDS(1)PGEEPFYTGQGR ;;; 257.07 1.80E-59 1806330000 1274520 1050540 717050 609536 1443910 1154490 1642060 1671130 776483 1728340 TRUE FALSE FALSE 1185182.73 967291.3844 994710.9633 1419030.612 1262801.344 1012060.762 1231199.22 1290650.18 843789.1716 1295552.414 0.914808785 0.746624663 0.767789054 1.095309303 0.974720382 0.78118087 0.950327603 0.996216105 0.651296823 1 20.30513595 LKTAPLPPASQTTPLQMALNGKPAPPPQS(ph)QSPEVEQLGR ddPTM_HeLa_A485_30min_R1 1 LKTAPLPPASQTTPLQMALNGKPAPPPQSQSPEVEQLGR 39 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 LKTAPLPPASQTTPLQMALNGKPAPPPQS(0.552)QS(0.448)PEVEQLGR 134.61 2.18E-07 216070000 43340 56432 27570 27270 61659 65524 84426 127950 45515 29324 TRUE FALSE FALSE 52980.83348 63031.23151 37769.29028 28759.69105 55520.01346 68954.73532 66387.6954 96570.06188 54649.44301 22014.06647 2.406680908 2.863225275 1.715688936 1.306423377 2.522024431 3.132303403 3.015694329 4.38674345 2.482478332 1 14.42613805 -6.001587944 24.94065852 3.006023641 2.080213566 0.113466527 0.875898142 99.09443819 1556448.339 0.270303878 0.302221033 9.96E-07 6.001587944 -0.925810076 LKTAPLPPASQTTPLQMALNGKPAPPPQS(ph)QSPEVEQLGR ddPTM_HeLa_A486_30min_R1 1 LKTAPLPPASQTTPLQMALNGKPAPPPQSQSPEVEQLGR 39 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 LKTAPLPPASQTT(0.001)PLQMALNGKPAPPPQS(0.499)QS(0.499)PEVEQLGR 42.461 0.022031 97952000 42875 35381 23925 15036 41898 27057 39628 41643 24208 53015 TRUE FALSE FALSE 39869.68391 32577.2807 33189.40073 35004.56788 36642.76216 23718.98244 29712.65526 32161.79796 26306.36893 39739.69893 1.00327091 0.819766671 0.835169909 0.880846328 0.922069445 0.596858634 0.747681942 0.809311566 0.661966991 1 15.27829332 -6.216101973 24.99990366 0.750277933 0.884397397 0.253382818 0.109248499 582.7878791 321360.3007 0.034253868 0.034253732 6.08E-07 6.216101973 0.134119463 LKTAPLPPASQTTPLQMALNGKPAPPPQSQS(ph)PEVEQLGR ddPTM_HeLa_A485_30min_R1 1 LKTAPLPPASQTTPLQMALNGKPAPPPQSQSPEVEQLGR 39 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 LKTAPLPPASQTTPLQMALNGKPAPPPQS(0.293)QS(0.707)PEVEQLGR 169.99 2.55E-15 166370000 31852 56582 32367 17003 45265 58676 74401 106560 35509 29132 TRUE FALSE FALSE 38937.36751 63198.7727 44340.9002 17931.83084 40758.25766 61748.18463 58504.61855 80425.99292 42635.33059 21869.92853 1.78040671 2.889756709 2.027482629 0.81993093 1.863666706 2.823428734 2.675117043 3.677469398 1.949495652 1 14.41666089 -6.251077839 23.30691796 2.60806993 1.882272184 0.083946912 0.799343602 544.7997618 1225453.928 0.265961778 0.262710943 5.61E-07 6.251077839 -0.725797747 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK(ac)TPASPVVHIR ddPTM_HeLa_A486_30min_R1 1 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR 47 2 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 1 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK(1)TPASPVVHIR 75.659 3.90E-07 4690500 7304.3 6647.4 7190.4 977.33 7579.9 7050.9 9578.2 9911.6 6280.5 8235.8 FALSE TRUE FALSE 6792.306289 6120.635815 9974.715446 2275.273632 6629.158262 6181.031646 7181.633052 7654.945049 6824.898797 6173.502074 1.100235524 0.991436585 1.615730476 0.368554769 1.07380838 1.00121966 1.163299691 1.239968005 1.105514944 1 12.59187341 -9.008459812 13.42258607 0.999986798 1.071568284 0.005689732 0.28990737 0 0 0.274182213 0.066498954 9.81E-10 9.008459812 0.071581486 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPAS(ph)PVVHIR ddPTM_HeLa_A486_30min_R1 1 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR 47 2 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 0 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENY(0.003)DDPHKT(0.162)PAS(0.835)PVVHIR 76.094 0.00015937 458840000 88211 73458 45082 26471 92336 78018 80676 101110 56478 109360 TRUE FALSE FALSE 82027.86442 67636.92055 62538.95774 61625.82577 80754.35788 68392.93239 60490.0115 78089.46022 61373.55851 81975.54419 1.000638242 0.82508657 0.762897744 0.751758666 0.985103041 0.834308977 0.73790314 0.952594594 0.748681319 1 16.32290595 -10.50351623 3.351760346 1.003410374 0.842546165 0.191184774 0.09599267 132045713.6 280190266 4561323.602 0.02341637 3.14E-11 10.50351623 -0.160864209 LKTEAEIALK ddPTM_HeLa_A486_30min_R1 1 LKTEAEIALK 10 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 96.103 0.017138 0 22936 22107 16494 11949 26022 25174 29794 28119 17853 27672 FALSE FALSE TRUE 21328.30484 20355.16081 22880.91852 27817.87587 22758.07811 22068.28783 22339.22607 21716.91753 19400.51241 20742.75109 1.02822932 0.981314423 1.103080225 1.341089027 1.097158136 1.063903613 1.076965441 1.046964187 0.935291193 1 14.34031963 -7.3688809 1.567629057 0.969723539 1.107580115 0.242207436 0.090686472 0.656024771 2.856386709 0.08446767 0.030251978 4.28E-08 7.3688809 0.137856575 LKTEEGEIDYS(ph)AEEGENRR ddPTM_HeLa_A485_30min_R1 4 LKTEEGEIDYSAEEGENRR 19 2 B7WPG3;C9IYN3;V9GYK2;Q8WVV9-3;Q8WVV9-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 LKTEEGEIDYS(1)AEEGENRR;LKTEEGEIDY(0.007)S(0.993)AEEGENRR;LKTEEGEIDYS(1)AEEGENRR;LKTEEGEIDYS(1)AEEGENRR ;;; 200.95 7.38E-26 1508520000 643682 674330 501254 860835 979831 825118 1146788 1247540 656484 1102220 TRUE FALSE FALSE 786866.8402 753187.0276 686688.7135 907860.2363 882275.5852 868319.9026 901767.3754 941578.8589 788234.3172 827456.8389 0.950946084 0.910243281 0.829878589 1.097169295 1.066249675 1.049383922 1.089805937 1.137919 0.95259871 1 19.65832454 -5.268866849 24.98267469 1.063447426 0.898344712 0.626413507 0.056118356 329.789043 1109262.332 0.015331923 0.023247606 5.38E-06 5.268866849 -0.165102714 LKTEEGEIDYS(ph)AEEGENRR ddPTM_HeLa_A486_30min_R1 2 LKTEEGEIDYSAEEGENRR 19 2 B7WPG3;C9IYN3;V9GYK2;Q8WVV9-3;Q8WVV9-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 LKTEEGEIDYS(1)AEEGENRR;LKTEEGEIDYS(1)AEEGENRR ; 224.93 3.31E-35 957880000 685960 621260 401090 305127 787480 721410 906040 946400 588720 934710 TRUE FALSE FALSE 637877.7463 572029.095 556402.7896 710351.0763 688706.9154 632409.769 679339.2089 730925.3798 639750.7236 700652.5321 0.910405254 0.816423361 0.794120857 1.01384216 0.982950727 0.902601133 0.969580752 1.043206649 0.913078444 1 19.41833963 -5.262432382 24.99971564 0.97392162 0.837927175 0.617457222 0.048577263 57.94698768 1458878.728 0.013573879 0.021520809 5.46E-06 5.262432382 -0.135994445 LKTEKEPDAT(ph)PPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LKTEKEPDATPPSPR 15 2 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 2 0 LKTEKEPDAT(1)PPS(1)PR 76.539 0.033239 110290000 133540 98728 62028 74104 132470 131930 188050 184970 83610 198800 TRUE FALSE FALSE 124179.5356 90904.43372 86046.90277 172517.857 115854.3774 115653.818 140997.901 142856.3689 90857.38212 149019.186 0.8333124 0.610018321 0.57742164 1.157688896 0.777446049 0.776100186 0.946172803 0.958644136 0.60970258 1 17.18513856 -5.214064743 24.99959654 0.880651636 0.667227517 0.292231889 0.153390896 520.7382409 274792.801 0.040593671 0.070310067 6.11E-06 5.214064743 -0.213424119 LKTEKEPDAT(ph)PPSPR ddPTM_HeLa_A485_30min_R1 1 LKTEKEPDATPPSPR 15 2 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 LKTEKEPDAT(0.8)PPS(0.2)PR 146.64 3.62E-07 348360000 433910 460810 315520 537310 639690 659890 916760 1020500 483240 834050 TRUE FALSE FALSE 530431.7825 514697.721 432243.9779 566661.8848 576000.2175 694440.82 720886.7368 770220.7749 580221.8355 626136.6846 0.847150144 0.822021347 0.690334856 0.905013073 0.919927281 1.109088219 1.15132487 1.230116034 0.926669607 1 19.2561181 -5.957977717 1.843225784 1.103042404 0.796845912 0.65702016 0.091410824 0.195693386 1.351420268 0.033636903 0.038186587 1.10E-06 5.957977717 -0.306196493 LKTEKEPDATPPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LKTEKEPDATPPSPR 15 2 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 LKTEKEPDAT(0.002)PPS(0.998)PR;LKTEKEPDATPPS(1)PR ; 106.73 0.00012995 1660190000 1828580 1809370 1130420 2048880 2304200 2419390 3362700 3874750 1579680 2905700 TRUE FALSE FALSE 2235341.312 2020960.082 1548609.399 2160805.126 2074785.757 2546065.519 2644231.674 2924461.487 1896707.286 2181362.465 1.024745473 0.926466882 0.70992759 0.990575918 0.951142137 1.167190487 1.212192708 1.340658205 0.869505787 1 21.05679808 -6.126588101 2.847013151 1.145687046 0.902150099 0.315878898 0.142059585 0.294011616 4.599002335 0.050266803 0.050716761 7.47E-07 6.126588101 -0.243536947 LKTEKEPDATPPS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LKTEKEPDATPPSPR 15 2 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 LKTEKEPDAT(0.175)PPS(0.825)PR;LKTEKEPDAT(0.02)PPS(0.98)PR;LKTEKEPDATPPS(1)PR;LKTEKEPDAT(0.001)PPS(0.999)PR ;;; 136.04 6.46E-06 1926990000 1558750 1264930 722092 651325 1522340 1421580 1891090 1905100 1028150 2001930 TRUE FALSE FALSE 1449489.674 1164692.34 1001705.361 1516317.516 1331393.922 1246199.913 1417919.28 1471350.318 1117270.87 1500633.698 0.965918383 0.776133671 0.667521569 1.010451464 0.887221128 0.830449106 0.944880341 0.980485991 0.744532707 1 20.51714043 -5.272046483 24.99504049 0.90987911 0.800485447 0.197432012 0.102102599 1141.375604 2689584.934 0.028415276 0.04263018 5.35E-06 5.272046483 -0.109393663 LKTPTK(ac)PPCQ ddPTM_HeLa_A486_30min_R1 1 LKTPTKPPCQ 10 2 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR70 Q96L91-3 EP400 E1A-binding protein p400 0 1 LK(0.001)TPTK(0.999)PPCQ 111.06 0.0025896 17789000 39342 52715 40148 18243 60001 49942 52293 53166 39867 47463 FALSE TRUE FALSE 36584.32896 48537.67142 55694.3808 42470.62595 52475.11509 43780.66381 39208.7383 41061.26241 43322.70366 35577.95587 1.028286423 1.364262511 1.565418233 1.193734292 1.474933391 1.230555909 1.102051463 1.154120899 1.217683889 1 15.118696 -6.523495345 6.218840797 1.134958626 1.335669668 0.303647438 0.146357876 0.194390126 33.16514163 0.054391007 0.044048743 3.00E-07 6.523495345 0.200711042 LKTS(ph)LGK ddPTM_HeLa_A485_30min_R1 2 LKTSLGK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LKT(0.017)S(0.983)LGK;LKT(0.007)S(0.993)LGK ; 107.15 0.0015969 1457330000 1174560 984260 669340 1564280 1377770 1071410 1602590 1791870 949240 2198600 TRUE FALSE FALSE 1435836.82 1099360.645 916956.7196 1649732.655 1240594.381 1127507.371 1260183.555 1352411.073 1139743.761 1650529.482 0.869924976 0.66606544 0.555553069 0.99951723 0.751634184 0.683118589 0.763502602 0.819380137 0.690532204 1 20.65449748 -11.16885881 2.323623572 1.607200201 0.754013426 0.286075284 0.115867781 6483090.875 1587172.578 20700817.22 0.028778768 6.78E-12 11.16885881 -0.853186775 LKTS(ph)LGK ddPTM_HeLa_A486_30min_R1 2 LKTSLGK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LKT(0.032)S(0.968)LGK;LKT(0.016)S(0.984)LGK ; 121.83 0.00092101 1663310000 1869790 1496720 668090 748920 1200640 1713350 2032790 1861050 1172910 2492700 TRUE FALSE FALSE 1738727.377 1378114.456 926792.3401 1743523.608 1050044.536 1501974.297 1524164.441 1437329.541 1274578.783 1868511.695 0.93054134 0.737546604 0.49600564 0.933108213 0.561968404 0.803834571 0.81571041 0.769237648 0.682135834 1 20.83345816 -10.73527304 2.467776045 1.05676985 0.744343452 0.24259946 0.13356731 17915320.12 12973810.59 6230907.822 0.034273266 1.84E-11 10.73527304 -0.312426398 LKVPEWVDTVK ddPTM_HeLa_A486_30min_R1 1 LKVPEWVDTVK 11 1 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 0 123.64 8.76E-05 93689000 154400 171270 134050 67829 212820 160680 183070 189880 141280 186220 FALSE FALSE TRUE 143577.3573 157697.9414 185957.75 157909.3399 186126.1311 140856.9353 137263.9497 146648.4691 153526.2642 139589.2999 1.028569936 1.129728006 1.332177682 1.131242438 1.333383943 1.009081179 0.983341487 1.05057099 1.09984264 1 17.09082883 -6.294982664 24.83527175 1.028901303 1.19213637 0.443661528 0.090953496 577.9424761 427903.6677 0.032502347 0.028666199 5.07E-07 6.294982664 0.163235067 LKVPPAINQFTQALDR ddPTM_HeLa_A485_30min_R1 2 LKVPPAINQFTQALDR 16 1 P62424;Q5T8U3 P62424 RPL7A 60S ribosomal protein L7a 0 0 ; ; 121.72 5.43E-05 122479000 69579 86530 80137 71897 96725 94472 106784 122174 75501 102115 FALSE FALSE TRUE 85056.60851 96648.93079 109783.0111 75824.55106 87094.71938 99418.40784 83968.72605 92210.63494 90653.35816 76659.60979 1.109536153 1.260754275 1.432084136 0.989106927 1.136122655 1.296881214 1.095345075 1.202858131 1.182543955 1 16.22617903 -13.99999999 0.203066628 0.116092268 1.221656066 0.196478835 0.115581497 241.6884999 2.397705413 86.75106573 0.273372132 1.00E-14 13.99999999 1.105563798 LKVSILPDVVFDS(ph)PLH ddPTM_HeLa_A485_30min_R1 1 LKVSILPDVVFDSPLH 16 1 Q9UMX1 Q9UMX1 SUFU Suppressor of fused homolog 1 0 LKVSILPDVVFDS(1)PLH 52.045 0.022139 22560000 12561 19301 15400 14552 19929 20112 22134 29797 16304 17790 TRUE FALSE FALSE 15355.15112 21558.08405 21097.10085 15346.93891 17944.79879 21165.03322 17404.89008 22489.23903 19576.06325 13355.2804 1.149743821 1.614199283 1.579682359 1.149128918 1.343648224 1.584768914 1.303221614 1.683921142 1.465792006 1 13.70512265 LKVWFR ddPTM_HeLa_A485_30min_R1 1 LKVWFR 6 1 H0YG71;F5GWX2;A0A3B3IRV5;Q9NRV9 H0YG71 HEBP1 Heme-binding protein 1 0 0 126.04 0.0053058 32079000 38693 51586 45063 27986 54394 47014 58835 73047 35505 44731 FALSE FALSE TRUE 47300.12436 57618.53396 61733.67893 29514.80432 48978.34237 49475.58034 46264.42161 55132.10872 42630.52783 33580.38491 1.408564091 1.715838997 1.83838509 0.878929899 1.458540231 1.473347625 1.377721599 1.64179502 1.269506825 1 15.03533115 -12.44724707 0.199487791 1.55E-14 1.543787857 0.245317346 0.246926866 109.0536418 1.881675641 45.97391363 0.650559167 3.57E-13 12.44724707 1.543787857 LKVWFR ddPTM_HeLa_A486_30min_R1 2 LKVWFR 6 1 H0YG71;F5GWX2;A0A3B3IRV5;Q9NRV9 H0YG71 HEBP1 Heme-binding protein 1 0 0 ; ; 106.29 0.010605 45573000 42695 37735 27268 16153.1 39982 36262 41801 42828 30019 48782 FALSE FALSE TRUE 39702.30098 34744.74117 37826.89986 37605.23313 34967.08474 31788.36313 31341.94767 33076.99933 32621.07109 36566.66968 1.085751077 0.950175159 1.034463904 1.028401915 0.956255657 0.869326176 0.857117915 0.904566908 0.892098498 1 15.15824162 -5.980191492 3.525442944 0.896202158 1.019586023 0.579943556 0.047710338 0.158763913 4.212001006 0.015138641 0.016630072 1.05E-06 5.980191492 0.123383865 LLAASGSNS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 LLAASGSNSPTR 12 0 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 LLAASGSNS(0.998)PT(0.001)R;LLAASGS(0.001)NS(0.988)PT(0.011)R ; 188.48 3.86E-15 0 385300 481980 426970 420970 406910 392970 526330 501990 309580 525580 TRUE FALSE FALSE 471008.6557 538343.3683 584923.9707 443966.5251 366396.6117 413545.3016 413875.2958 378876.1654 371709.8664 394562.5786 1.193748929 1.364405541 1.482461851 1.125211942 0.928614703 1.048110804 1.048947159 0.960243535 0.942080893 1 18.58989461 -5.477373435 4.874206943 0.993730134 1.346364229 0.819041045 0.075364613 0.083497985 4.524784606 0.022386544 0.03266908 3.33E-06 5.477373435 0.352634095 LLAASGSNS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 LLAASGSNSPTR 12 0 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 LLAASGS(0.002)NS(0.992)PT(0.006)R 102.33 0.00069717 0 193780 237260 135890 54825 192760 215880 271830 228030 175570 238380 TRUE FALSE FALSE 180197.0227 218458.6535 188510.2473 127635.3707 168582.2434 189246.9205 203815.2589 176112.5469 190788.549 178688.0964 1.00844447 1.222569706 1.054968132 0.714291401 0.943444173 1.059090809 1.140620237 0.98558634 1.067718291 1 17.447084 -5.000726681 24.99996045 0.985779035 1.121322575 0.166350063 0.116084862 47.84458414 1646252.724 0.032530914 0.066474465 9.98E-06 5.000726681 0.13554354 LLAASGSNS(ph)PTRS(ph)ESPEPAATCSLPSDLTR ddPTM_HeLa_A485_30min_R1 1 LLAASGSNSPTRSESPEPAATCSLPSDLTR 30 1 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 2 0 LLAAS(0.269)GS(0.314)NS(0.363)PT(0.199)RS(0.526)ES(0.329)PEPAATCSLPSDLTR 65.736 0.0067999 125230000 23334 28223 50409 36752 58575 38000 58258 48969 41990 51217 TRUE FALSE FALSE 28524.5678 31523.43434 69057.38679 38759.6687 52743.06733 39989.62124 45810.70238 36959.27597 50417.00784 38449.54448 0.74187011 0.819864963 1.796052144 1.008065745 1.371747521 1.040054487 1.191449808 0.961240932 1.311251109 1 15.23067889 -4.555732296 24.99997498 1.207602138 0.76136641 0.348251578 0.235856038 164.2372063 124976.1079 0.056946896 0.150669247 2.78E-05 4.555732296 -0.446235728 LLAAVEAFYS(ph)PPSHDRPR ddPTM_HeLa_A485_30min_R1 2 LLAAVEAFYSPPSHDRPR 18 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 1 0 LLAAVEAFYS(0.978)PPS(0.022)HDRPR;LLAAVEAFY(0.003)S(0.992)PPS(0.005)HDRPR ; 133.09 3.80E-06 528670000 96751 129609 128020 94285 148189 120818 128622 157320 121972 131324 TRUE FALSE FALSE 118272.9262 144765.6451 175379.9254 99435.55081 133434.7828 127143.8437 101140.859 118737.0233 146450.6616 98587.34364 1.199676569 1.468399896 1.778929413 1.008603611 1.353467676 1.289656856 1.025901046 1.204384041 1.485491506 1 16.58911483 -5.274650859 24.9883203 1.20733017 1.480941781 0.306532983 0.197224484 961.3092979 1818227.475 0.055418358 0.082750103 5.31E-06 5.274650859 0.273611611 LLAAVEAFYS(ph)PPSHDRPR ddPTM_HeLa_A486_30min_R1 2 LLAAVEAFYSPPSHDRPR 18 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 1 0 LLAAVEAFY(0.163)S(0.663)PPS(0.174)HDRPR;LLAAVEAFYS(0.976)PPS(0.024)HDRPR ; 123.43 8.17E-06 452260000 133562 140969 147822 62042 173770 134382 156313 157871 127479 138110 TRUE FALSE FALSE 124199.9935 129798.103 205062.6372 144436.9114 151974.1463 117803.3151 117201.8341 121927.2196 138528.9824 103526.3571 1.199694426 1.25376867 1.980777099 1.395170424 1.467975408 1.137906505 1.132096574 1.177740848 1.338103516 1 16.65963859 -6.257077521 22.33117378 1.166711212 1.473437527 0.337312026 0.211200428 106.7165612 546350.9486 0.073725213 0.071104274 5.53E-07 6.257077521 0.306726315 LLACIASRPGQCGR ddPTM_HeLa_A485_30min_R1 2 LLACIASRPGQCGR 14 1 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 ; ; 254.89 3.35E-40 241190000 65737 91556 95787 66770 112287 88272 101806 118466 84080 86306 FALSE FALSE TRUE 80359.96886 102262.6778 131222.5973 70417.47603 101107.312 92893.78543 80054.31642 89412.02775 100954.0848 64791.50254 1.240285619 1.578334716 2.025305668 1.086831965 1.560502659 1.433734082 1.235568142 1.379996207 1.558137731 1 15.98351699 -12.45932314 0.18708778 2.11E-09 1.559723381 0.23339912 0.245275492 104.8658446 1.718331064 41.50514878 0.740583265 3.47E-13 12.45932314 1.559723378 LLACIASRPGQCGR ddPTM_HeLa_A486_30min_R1 2 LLACIASRPGQCGR 14 1 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 ; ; 216.34 7.26E-22 240450000 106351 124140 109294 36192 132142 93251 122036 121045 92971 123950 FALSE FALSE TRUE 98896.3441 114302.6943 151615.5638 84256.80504 115567.5182 81746.63973 91501.30203 93485.69589 101029.8011 92912.11322 1.064407435 1.230223814 1.631816978 0.906844136 1.243836936 0.87982758 0.984815638 1.00617339 1.087369533 1 16.50357908 -5.297426602 24.99459628 1.018385623 1.300957239 0.410263417 0.161018126 571.1374802 396677.0483 0.045129897 0.066940945 5.04E-06 5.297426602 0.282571616 LLALLDALASHK ddPTM_HeLa_A486_30min_R1 1 LLALLDALASHK 12 0 Q69YN4-3;Q69YN4;Q69YN4-2;H0YBN5 Q69YN4-3 KIAA1429 Protein virilizer homolog 0 0 114.86 0.017412 0 8969.7 6660.1 3817.6 2989.5 5362.5 6177.3 6162.6 6338.6 5647.1 8045.6 FALSE FALSE TRUE 8340.97035 6132.32942 5295.876959 6959.707081 4689.885247 5415.207532 4620.652299 4895.439151 6136.595175 6030.929392 1.383032333 1.016813334 0.878119543 1.154002415 0.777638891 0.897905974 0.766159243 0.81172218 1.017520647 1 12.55816463 -1.027128203 0.877168018 0.888244458 199.9789034 0.599165493 0.114495247 501.1427507 1.287757671 0.038242048 199367.2177 0.093944595 1.027128203 199.0906589 LLALYNQGHIKPHIDSVWPFEK ddPTM_HeLa_A485_30min_R1 2 LLALYNQGHIKPHIDSVWPFEK 22 1 Q99536-3;Q99536;K7ESA3;Q99536-2 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 0 0 ; ; 73.758 0.0029331 38831000 35347 41262 34651 36552 50542 48804 61555 59950 35331 55374 FALSE FALSE TRUE 43209.8182 46087.23197 47469.84685 38548.74321 45509.86102 51359.30197 48403.27139 45247.1685 42421.60762 41570.28088 1.039440131 1.108658181 1.141917876 0.927314956 1.094769149 1.235481235 1.164372007 1.08844991 1.020479216 1 15.34326488 -4.250388291 22.34952265 1.093644772 1.039439988 0.022541976 0.083361874 1645.064472 3326653.333 0.02180158 0.28822012 5.62E-05 4.250388291 -0.054204784 LLALYNQGHIKPHIDSVWPFEK ddPTM_HeLa_A486_30min_R1 2 LLALYNQGHIKPHIDSVWPFEK 22 1 Q99536-3;Q99536;K7ESA3;Q99536-2 Q99536-3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 0 0 ; ; 71.535 0.0036448 42872000 84273 73125 53398 19017 88366 74591 98547 89140 68726 85947 FALSE FALSE TRUE 78365.89789 67330.30868 74075.13565 44272.53707 77282.3123 65388.72081 73889.49828 68844.76791 74683.22502 64425.31178 1.216383681 1.045090925 1.149783115 0.687191662 1.199564428 1.01495389 1.146901679 1.068598133 1.159221786 1 15.97533999 -6.750489933 24.82381145 1.099396919 1.046387882 0.017826122 0.144819869 921.2448706 2088586.568 0.054971112 0.042160029 1.78E-07 6.750489933 -0.053009037 LLAQAEGEPCY(ph)IR ddPTM_HeLa_A485_30min_R1 1 LLAQAEGEPCYIR 13 0 H0YE41;E9PPF2;E9PM19;P29597 H0YE41 TYK2 Tyrosine-protein kinase;Non-receptor tyrosine-protein kinase TYK2 1 0 LLAQAEGEPCY(1)IR 72.434 0.0081059 125570000 71439 74132 87780 77952 83428 66816 77551 62234 72482 120870 TRUE FALSE FALSE 87330.35909 82801.09254 120253.4748 82210.32038 75121.61539 70314.38244 60981.59532 46971.01392 87028.47256 90739.33345 0.962431128 0.912515988 1.325262929 0.906005337 0.827883703 0.774905212 0.672052494 0.517647773 0.959104164 1 16.46944044 -5.662245582 2.961193939 0.756628791 1.05763538 0.338549234 0.165763488 0.264335872 4.659473805 0.051852673 0.068713585 2.18E-06 5.662245582 0.301006589 LLAS(ph)PSSR ddPTM_HeLa_A485_30min_R1 4 LLASPSSR 8 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 LLAS(0.988)PS(0.012)SR;LLAS(0.899)PS(0.101)S(0.001)R;LLAS(0.793)PS(0.207)SR;LLAS(0.558)PS(0.442)S(0.001)R ;;; 166.34 3.12E-05 2194400000 1238540 1705940 1718190 1249270 2080220 1603490 1710890 2077600 1537500 1646400 TRUE FALSE FALSE 1514048.95 1905434.843 2353819.981 1317514.457 1873105.993 1687446.257 1345344.375 1568065.342 1846062.147 1235982.78 1.224975764 1.541635429 1.904411631 1.065965059 1.515479037 1.365266802 1.088481488 1.268678956 1.493598598 1 20.23722721 -5.95262576 1.09122548 1.243486474 1.50898291 0.162299414 0.239729254 0.945005516 2.399198566 0.113534499 0.139040775 1.12E-06 5.95262576 0.265496436 LLAS(ph)PSSR ddPTM_HeLa_A486_30min_R1 4 LLASPSSR 8 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 LLAS(0.85)PS(0.15)SR;LLAS(0.56)PS(0.439)SR;LLAS(0.979)PS(0.008)S(0.012)R;LLAS(0.777)PS(0.223)SR ;;; 191.25 4.26E-06 3948320000 2093770 2427870 2232260 731046 2865630 2134220 2387750 2531060 1868090 2154310 TRUE FALSE FALSE 1947007.535 2235476.739 3096650.854 1701912.033 2506195.964 1870921.636 1790309.695 1954792.891 2030017.545 1614856.754 1.205684362 1.384318909 1.917600955 1.053908979 1.551961781 1.158568171 1.108649229 1.210505443 1.257088309 1 20.62297477 -6.280213169 23.24822933 1.157724179 1.427569642 0.280283946 0.22051648 469.2125198 581039.0606 0.076781582 0.067866459 5.25E-07 6.280213169 0.269845463 LLASPS(ph)SR ddPTM_HeLa_A485_30min_R1 4 LLASPSSR 8 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 LLAS(0.282)PS(0.717)S(0.001)R;LLAS(0.052)PS(0.947)S(0.001)R;LLAS(0.268)PS(0.727)S(0.005)R;LLAS(0.338)PS(0.662)SR ;;; 180.74 7.81E-06 4255080000 1784550 2482860 2534630 1763450 2930670 2292280 2569290 2886800 2195220 2353840 TRUE FALSE FALSE 2181516.991 2773208.879 3472295.112 1859782.808 2638882.205 2412300.236 2020340.202 2178807.774 2635780.518 1767071.007 1.234538387 1.569381687 1.96500033 1.05246637 1.493365119 1.365140521 1.143327118 1.233005219 1.491609849 1 20.75292858 -5.280397226 24.9994923 1.27381587 1.587614373 0.312503192 0.22672786 1012.010626 1334524.24 0.063446653 0.094276023 5.24E-06 5.280397226 0.313798503 LLASPS(ph)SR ddPTM_HeLa_A486_30min_R1 4 LLASPSSR 8 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 LLAS(0.066)PS(0.917)S(0.018)R;LLAS(0.168)PS(0.814)S(0.018)R;LLAS(0.024)PS(0.974)S(0.002)R;LLAS(0.015)PS(0.911)S(0.075)R ;;; 155.57 0.00012949 2273120000 1447350 1673650 1577370 517130 2033000 1445290 1680690 1714450 1337860 1531750 TRUE FALSE FALSE 1345898.239 1541023.879 2188169.907 1203904.774 1778002.183 1266984.814 1260163.585 1324107.161 1453826.782 1148189.83 1.172191396 1.342133364 1.905756218 1.048524158 1.54852633 1.103462843 1.097521989 1.153212759 1.266190262 1 20.13092975 -6.276816197 24.24666064 1.131993615 1.408211563 0.282432837 0.22238917 761.4679582 1200703.056 0.077294865 0.068432898 5.29E-07 6.276816197 0.276217948 LLASQGSQGAPLLS(ph)TPKR ddPTM_HeLa_A486_30min_R1 2 LLASQGSQGAPLLSTPKR 18 1 H3BRB3;Q14807-2;Q14807 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 LLASQGSQGAPLLS(0.606)T(0.394)PKR;LLASQGSQGAPLLS(0.629)T(0.371)PKR ; 169.9 1.66E-12 1001110000 376340 362260 282830 141815 407570 397120 460660 464150 301400 391890 TRUE FALSE FALSE 349960.5094 333553.1983 392349.3505 330152.4869 356448.7702 348127.372 345397.9956 358473.1773 327525.5947 293758.1932 1.191321698 1.135468579 1.33562011 1.123892012 1.213408778 1.185081404 1.175790169 1.220300184 1.11494965 1 18.16426956 -8.038065356 3.445038313 1.00022345 1.196781645 0.558317067 0.054725942 0.169730556 5.306402097 0.049862628 0.013208582 9.16E-09 8.038065356 0.196558195 LLASQGSQGAPLLST(ph)PK ddPTM_HeLa_A485_30min_R1 1 LLASQGSQGAPLLSTPK 17 0 H3BRB3;Q14807-2;Q14807 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 LLASQGSQGAPLLS(0.001)T(0.999)PK 153.18 1.65E-07 182280000 190980 204810 143660 285990 286770 249690 311320 359800 148080 371000 TRUE FALSE FALSE 233462.8421 228760.7479 196805.8122 301612.9095 258218.1719 262763.3823 244803.9387 271558.4859 177798.2977 278516.5277 0.838236941 0.821354301 0.706621664 1.082926432 0.927119744 0.9434391 0.878956595 0.97501749 0.638376111 1 18.08740342 -5.236493309 24.97779922 0.919251672 0.791999319 0.222505113 0.113079735 1216.838879 1218384.987 0.029934641 0.051819932 5.80E-06 5.236493309 -0.127252353 LLASS(ph)PALPSSGAQAR ddPTM_HeLa_A485_30min_R1 1 LLASSPALPSSGAQAR 16 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LLAS(0.019)S(0.977)PALPS(0.004)S(0.001)GAQAR 174.95 1.57E-12 282460000 494760 540700 556980 397920 775000 537660 611240 717330 493480 580080 TRUE FALSE FALSE 604817.6551 603930.1615 763030.0799 419657.362 697838.2788 565811.0462 480643.5806 541403.6928 592516.9095 435476.7316 1.388863311 1.386825329 1.752171872 0.963673445 1.602469726 1.299291111 1.103718169 1.243243676 1.360616691 1 18.73223611 -11.25324604 0.060590239 7.54E-08 1.99109339 0.256880215 0.203797 290.2316081 2.291041369 61.86223092 21.59491196 5.58E-12 11.25324604 1.991093315 LLASS(ph)PALPSSGAQAR ddPTM_HeLa_A486_30min_R1 1 LLASSPALPSSGAQAR 16 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LLAS(0.04)S(0.96)PALPSSGAQAR 159.22 3.76E-09 759050000 646270 742120 675080 239360 854420 571330 667190 713390 559770 587330 TRUE FALSE FALSE 600969.8103 683311.7084 936489.0553 557242.1766 747250.6764 500845.1135 500252.0052 550966.6702 608291.3143 440258.7451 1.365037758 1.552068451 2.127133341 1.265715179 1.697298883 1.137615366 1.136268185 1.251461047 1.38166776 1 18.74799214 -6.264074903 24.9499924 1.194297881 1.609259884 0.449148148 0.232290596 224.6037885 2126270.694 0.080070362 0.073825659 5.44E-07 6.264074903 0.414962002 LLCGLLAER ddPTM_HeLa_A485_30min_R1 2 LLCGLLAER 9 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 0 ; ; 171.38 2.95E-06 99360000 76377 78878 88112 78092 98076 119586 135831 167432 69061 105122 FALSE FALSE TRUE 93366.80015 88102.09595 120708.2954 82357.96822 88311.20907 125847.338 106809.5972 126369.0395 82920.90923 78917.02003 1.183100935 1.116389037 1.529559725 1.043602105 1.119038821 1.594679297 1.353441845 1.601290057 1.050735433 1 16.26804886 -6.192631765 24.99981245 1.359706698 1.203590177 0.056388481 0.220338729 403.8617596 146733.8972 0.070237909 0.070237896 6.42E-07 6.192631765 -0.156116521 LLCGLLAER ddPTM_HeLa_A486_30min_R1 2 LLCGLLAER 9 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 0 ; ; 198.87 2.06E-11 77795000 46138 81413 84649 31311 108156 93372 98982 88991 84947 93277 FALSE FALSE TRUE 42903.96446 74961.53738 117427.3598 72893.59037 94590.06597 81852.71198 74215.65668 68729.69196 92310.27436 69919.83207 0.613616526 1.072106942 1.67945712 1.04253097 1.352836 1.170665168 1.061439287 0.982978504 1.320230207 1 16.0934141 -6.709669408 8.080503542 1.089848026 1.17940264 0.008924123 0.265316826 1.342999995 185.3603588 0.104541714 0.080433907 1.95E-07 6.709669408 0.089554614 LLCGSLTR ddPTM_HeLa_A485_30min_R1 1 LLCGSLTR 8 0 I3L2C7;P57678 I3L2C7 GEMIN4 Gem-associated protein 4 0 0 101.64 0.0068248 0 76183 71397 65632 111410 105360 95696 124320 124180 80255 160830 FALSE FALSE TRUE 93129.64552 79746.25808 89912.00798 117496.0462 94869.98846 100706.4946 97758.0164 93724.66029 96361.44236 120738.0409 0.771336398 0.660489913 0.744686657 0.973148524 0.785750603 0.834090846 0.809670388 0.776264545 0.798103412 1 16.88152077 -14 0.183793648 1.817599738 0.756824416 0.414846674 0.073766582 149.6233869 1.449483596 45.02350389 0.237257006 1.00E-14 14 -1.060775322 LLCGSLTR ddPTM_HeLa_A486_30min_R1 1 LLCGSLTR 8 0 I3L2C7;P57678 I3L2C7 GEMIN4 Gem-associated protein 4 0 0 126.28 0.026316 262020000 126490 153490 86776 68831 139060 157190 195270 177040 108200 215750 FALSE FALSE TRUE 117623.7042 141326.8934 120377.9911 160242.0465 121617.7981 137797.496 146411.3806 136731.8568 117578.8631 161724.7957 0.727307793 0.873872759 0.744338496 0.990831652 0.752004648 0.852049282 0.905311891 0.845460068 0.727030525 1 17.30318136 -11.32791667 2.285190197 1.954948843 0.829955593 0.285757354 0.08291785 6654137.392 1105023.331 32689240.19 0.01991718 4.70E-12 11.32791667 -1.12499325 LLCWLCTLSYK ddPTM_HeLa_A485_30min_R1 1 LLCWLCTLSYK 11 0 Q8TAV0-5;Q8TAV0-2;Q8TAV0-4;E9PQL1;Q8TAV0;Q8TAV0-3;F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 Q8TAV0-5;F5GX09 FAM76A;FAM76B Protein FAM76A;Protein FAM76B 0 0 142.92 0.00096735 1042200 3224.4 1936.9 2395.1 2142 2526.1 1707.5 1597.1 2568.8 1353.9 2389.8 FALSE FALSE TRUE 3941.656656 2163.403606 3281.147158 2259.012036 2274.592614 1796.90206 1255.866538 1938.797772 1625.615311 1794.066841 2.197051172 1.205865666 1.828887912 1.25915712 1.267841622 1.001580331 0.700011008 1.080671984 0.906106325 1 10.80901793 -3.285812382 0.371128487 0.870347925 4.015437339 0.697352929 0.233902141 7.065814421 0.441585367 0.193577351 11.44334862 0.00051783 3.285812382 3.145089415 LLCWLCTLSYKR ddPTM_HeLa_A485_30min_R1 1 LLCWLCTLSYKR 12 1 Q8TAV0-5;Q8TAV0-2;Q8TAV0-4;E9PQL1;Q8TAV0;Q8TAV0-3;F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 Q8TAV0-5;F5GX09 FAM76A;FAM76B Protein FAM76A;Protein FAM76B 0 0 176.8 3.22E-09 13551000 8261.9 14425 10925 7216 14084 12781 19911 21625 5340.4 10941 FALSE FALSE TRUE 10099.73115 16111.87827 14966.61213 7610.191808 12681.74751 13450.1934 15656.85219 16321.43484 6412.169295 8213.610054 1.229633631 1.961607401 1.822172227 0.926534345 1.543991914 1.637549544 1.906208365 1.987120734 0.780676128 1 13.00380074 -7.773664565 24.9992197 0.890337507 1.62808395 0.455542308 0.322073974 237.1455425 484922.3735 0.313663682 0.083398597 1.68E-08 7.773664565 0.737746443 LLDESESAAS(ph)SR ddPTM_HeLa_A485_30min_R1 1 LLDESESAASSR 12 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 LLDESESAAS(0.935)S(0.064)R 107.12 0.00058234 0 119720 165240 161960 140110 184670 160490 195770 186420 145850 176600 TRUE FALSE FALSE 146351.301 184563.3806 221875.7437 147763.8545 166283.6064 168893.0082 153942.1402 140700.2027 175120.7572 132576.8701 1.103897693 1.392123532 1.673562995 1.114552293 1.254242963 1.273925143 1.161153828 1.061272623 1.32089977 1 17.01646957 -6.08782213 0.991661812 1.142418992 1.362314275 0.199214707 0.167136762 0.882344393 1.863496553 0.090709062 0.098484291 8.17E-07 6.08782213 0.219895283 LLDESESAAS(ph)SR ddPTM_HeLa_A486_30min_R1 1 LLDESESAASSR 12 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 LLDESESAAS(0.948)S(0.051)R 147.7 2.77E-06 0 258300 340300 250380 85372 295270 280300 294240 282670 288780 325310 TRUE FALSE FALSE 240194.5039 313333.3886 347333.8414 198750.3305 258234.4833 245719.4359 220618.0398 218312.2116 313811.6829 243850.2586 0.985008198 1.284941794 1.42437348 0.815050727 1.058987941 1.007665267 0.904727521 0.895271602 1.28690322 1 17.89563598 -5.263149778 24.99844253 0.990519635 1.236791215 0.326080853 0.155253704 171.0610317 2500166.36 0.042683077 0.067211246 5.46E-06 5.263149778 0.24627158 LLDESESAASS(ph)R ddPTM_HeLa_A486_30min_R1 1 LLDESESAASSR 12 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 LLDESESAAS(0.228)S(0.772)R 174.89 6.38E-11 311300000 495540 652850 486030 201300 570760 600850 571510 539680 560670 693620 TRUE FALSE FALSE 460805.205 601115.7884 674233.8323 468636.5731 499169.9587 526723.236 428512.1532 416806.6451 609269.327 519933.0373 0.886277986 1.156140782 1.296770515 0.901340249 0.96006586 1.013059756 0.824167965 0.801654473 1.171822684 1 18.9879663 -5.298763148 24.98039628 0.942303357 1.11737103 0.223176055 0.135586635 747.3677583 500203.498 0.038338306 0.056866004 5.03E-06 5.298763148 0.175067672 LLDEYNVTPS(ph)PPGTVLTSALS(ph)PVICGPNR ddPTM_HeLa_A486_30min_R1 1 LLDEYNVTPSPPGTVLTSALSPVICGPNR 29 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 2 0 LLDEY(0.001)NVT(0.034)PS(0.76)PPGT(0.168)VLT(0.064)S(0.166)ALS(0.808)PVICGPNR 66.658 0.0067338 9211000 9505.2 13325 15375 5580 19183 14907 13126 12606 15379 16444 TRUE FALSE FALSE 8838.934565 12269.07847 21328.61176 12990.522 16776.88927 13067.9259 9841.735967 9735.888987 16712.0641 12326.31537 0.717078405 0.995356528 1.7303315 1.053885254 1.361062797 1.060164819 0.79843292 0.789845846 1.35580371 1 13.58945399 -6.517863384 24.13921393 0.962906481 1.188697231 0.082969801 0.285272235 327.1981284 1574847.823 0.109322644 0.087240602 3.03E-07 6.517863384 0.22579075 LLDEYNVTPS(ph)PPGTVLTSALSPVICGPNR ddPTM_HeLa_A485_30min_R1 1 LLDEYNVTPSPPGTVLTSALSPVICGPNR 29 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 LLDEY(0.004)NVT(0.032)PS(0.931)PPGT(0.032)VLTSALSPVICGPNR 103.99 0.00025461 48642000 47209 46172 36688 52753 40677 47427 59327 58352 47389 103440 TRUE FALSE FALSE 57710.47918 51571.41376 50260.41792 55634.76281 36627.05505 49910.20438 46651.30179 44041.08051 56899.53762 77654.31167 0.743171602 0.664115265 0.647232804 0.716441388 0.471668015 0.6427229 0.600756105 0.567142758 0.732728633 1 16.24477841 -8.084879341 4.881334766 0.999958132 0.630656672 0.704752508 0.072006547 0.270362915 14.32251131 0.070466934 0.018375593 8.22E-09 8.084879341 -0.36930146 LLDEYNVTPS(ph)PPGTVLTSALSPVICGPNR ddPTM_HeLa_A486_30min_R1 2 LLDEYNVTPSPPGTVLTSALSPVICGPNR 29 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 LLDEYNVT(0.001)PS(0.957)PPGT(0.042)VLTSALSPVICGPNR;LLDEY(0.001)NVT(0.005)PS(0.247)PPGT(0.247)VLT(0.247)S(0.247)ALS(0.006)PVICGPNR ; 134.78 1.69E-06 79598000 113582 142757 143299 50375 198203 148013 139500 134648 167503 175369 TRUE FALSE FALSE 105620.4883 131444.4154 198788.2105 117275.5458 173342.5316 129752.6609 104595.6245 103991.5897 182022.2949 131455.4609 0.803469765 0.999915975 1.512209604 0.892131411 1.31864078 0.987046563 0.795673483 0.791078507 1.384668949 1 17.00421455 -6.493288212 24.73692345 0.963432909 1.114452358 0.045490267 0.244087139 1694.19699 1416307.428 0.0858005 0.075543507 3.21E-07 6.493288212 0.151019449 LLDEYNVTPSPPGTVLTSALS(ph)PVICGPNR ddPTM_HeLa_A485_30min_R1 2 LLDEYNVTPSPPGTVLTSALSPVICGPNR 29 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 LLDEYNVTPSPPGTVLT(0.003)S(0.073)ALS(0.924)PVICGPNR;LLDEYNVTPSPPGTVLTS(0.013)ALS(0.986)PVICGPNR ; 158.1 3.09E-10 173514000 154826 145909 124200 176634 130473 154916 184565 173698 150282 327780 TRUE FALSE FALSE 189266.5096 162971.7883 170146.7484 186283.0682 117482.65 163027.1622 145131.18 131098.2932 180442.2189 246070.4783 0.769155694 0.662297198 0.691455349 0.757031357 0.477434964 0.662522231 0.589795172 0.532767254 0.733294868 1 17.90871206 -8.020383396 22.76824317 1.000000004 0.641686727 0.608599033 0.086268982 312.638078 349217.3477 0.084718138 0.021874124 9.54E-09 8.020383396 -0.358313277 LLDEYNVTPSPPGTVLTSALS(ph)PVICGPNR ddPTM_HeLa_A486_30min_R1 1 LLDEYNVTPSPPGTVLTSALSPVICGPNR 29 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 LLDEYNVTPSPPGT(0.004)VLT(0.008)S(0.08)ALS(0.909)PVICGPNR 85.448 0.0015576 53188000 34135 42415 48692 13195 56458 43119 39840 28194 52741 55724 TRUE FALSE FALSE 31742.31277 39053.88093 67546.84642 30718.62684 49376.51119 37799.41618 29871.61062 21774.84167 57312.63235 41770.3477 0.759924552 0.934966623 1.617100411 0.735417073 1.182094809 0.9049342 0.715139142 0.521299028 1.372088946 1 15.35019153 -6.476630045 10.3294689 0.854810207 1.053283175 0.042172522 0.309026776 1.89804168 418.9646089 0.108131511 0.094925671 3.34E-07 6.476630045 0.198472969 LLDFCK ddPTM_HeLa_A485_30min_R1 1 LLDFCK 6 0 P52895;B4DK69;Q04828;H0Y804;P17516;A0A0A0MSS8;P42330;S4R3Z2;P42330-2 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 106.76 0.035628 24693000 76735 64602 74928 88647 100180 83701 110130 100790 77991 125580 FALSE FALSE TRUE 93804.43602 72156.64194 102646.9852 93489.56114 90205.72745 88083.45493 86599.82582 76071.09447 93643.07832 94275.21713 0.995006311 0.76538293 1.088801366 0.991666357 0.95683394 0.934322483 0.91858527 0.806904474 0.993294751 1 16.52459095 -6.502768388 3.053686933 0.914180872 0.957454216 0.013522474 0.090485709 0.999162283 18.97140662 0.036117741 0.02907273 3.14E-07 6.502768388 0.043273344 LLDFGS(ph)LSNLQVTQPTVGMNFK ddPTM_HeLa_A485_30min_R1 2 LLDFGSLSNLQVTQPTVGMNFK 22 0 H3BNC9;P08708 H3BNC9 RPS17 40S ribosomal protein S17 1 0 LLDFGS(0.785)LS(0.215)NLQVTQPTVGMNFK;LLDFGS(0.855)LS(0.145)NLQVTQPTVGMNFK ; 172.66 1.93E-14 49460000 50661 45263 44678 49371 69046 47352 74800 86886 47504 67284 TRUE FALSE FALSE 61930.36467 50556.11411 61206.25141 52068.01272 62171.5378 49831.2775 58818.36894 65577.07227 57037.61707 50511.33707 1.226068607 1.000886475 1.211732949 1.030818342 1.230843241 0.986536496 1.16445876 1.298264431 1.129204261 1 15.62431961 -6.971271139 24.99555458 1.174513143 1.11191395 0 0.109354703 583.6486688 507802.9468 0.042455397 0.028623155 1.07E-07 6.971271139 -0.062599193 LLDFGS(ph)LSNLQVTQPTVGMNFK ddPTM_HeLa_A486_30min_R1 2 LLDFGSLSNLQVTQPTVGMNFK 22 0 H3BNC9;P08708 H3BNC9 RPS17 40S ribosomal protein S17 1 0 LLDFGS(0.5)LS(0.5)NLQVTQPTVGMNFK;LLDFGS(0.495)LS(0.495)NLQVT(0.01)QPTVGMNFK ; 129.15 1.11E-06 47741000 55065 77533 58279 34745 76487 77915 95809 93936 66080 78761 TRUE FALSE FALSE 51205.22786 71389.00271 80846.18957 80888.11592 66893.28725 68302.63948 71836.57484 72548.82341 71807.86761 59038.73295 0.867315833 1.209189275 1.369375417 1.370085567 1.133040699 1.156912353 1.216770267 1.228834356 1.216284023 1 15.84937414 -10.73309261 8.431984107 0.998845772 1.205518568 0.161263212 0.132938954 0.002982192 9.44E-05 0.133075247 0.032111341 1.85E-11 10.73309261 0.206672795 LLDFGSLSNLQVTQPTVGMNFKT(ph)PR ddPTM_HeLa_A485_30min_R1 1 LLDFGSLSNLQVTQPTVGMNFKTPR 25 1 H3BNC9;P08708 H3BNC9 RPS17 40S ribosomal protein S17 1 0 LLDFGSLSNLQVTQPT(0.056)VGMNFKT(0.943)PR 140.94 2.74E-07 95702000 39479 34237 27163 39036 49277 41223 52912 62129 27677 54106 TRUE FALSE FALSE 48260.96735 38240.71933 37211.72405 41168.43784 44370.80886 43381.37254 41606.91895 46891.76534 33231.52003 40618.36995 1.188156182 0.941463662 0.916130413 1.013542343 1.092382804 1.068023473 1.024337486 1.154447246 0.818140168 1 15.30984472 -7.767203436 24.99998719 0.90907014 1.041711033 0.278195559 0.089926364 208.8473035 905771.676 0.078778772 0.022509433 1.71E-08 7.767203436 0.132640894 LLDFGSLSNLQVTQPTVGMNFKT(ph)PR ddPTM_HeLa_A486_30min_R1 2 LLDFGSLSNLQVTQPTVGMNFKTPR 25 1 H3BNC9;P08708 H3BNC9 RPS17 40S ribosomal protein S17 1 0 LLDFGSLSNLQVTQPT(0.088)VGMNFKT(0.912)PR;LLDFGSLSNLQVTQPT(0.04)VGMNFKT(0.96)PR ; 113.33 0.00031379 252300000 66361 74504 52245 33741 84700 81226 93681 87908 61779 93325 TRUE FALSE FALSE 61709.43659 68600.0317 72475.66317 78550.75318 74076.1362 71205.16197 70241.02294 67893.26742 67134.05346 69955.81256 0.882120218 0.980619468 1.036020604 1.122862423 1.058898946 1.017859122 1.004077008 0.970516458 0.959663694 1 16.09415631 -9.864002096 13.73387686 1.000004884 1.008493172 0 0.060876651 0 0 0.064399136 0.015619085 1.37E-10 9.864002096 0.008488288 LLDGFFIRPFYK ddPTM_HeLa_A486_30min_R1 1 LLDGFFIRPFYK 12 1 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5;K7ERN1;Q96PU5-3;H0Y8X6;P46934-4;P46934-3;P46934-2;P46934 Q96PU5-9;P46934-3 NEDD4L;NEDD4 E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4 0 0 116.54 0.00087081 5865700 16220 14756 11975 6417.3 18197 15912 16028 16914 16146 17796 FALSE FALSE TRUE 15083.06176 13586.68082 16612.0407 14939.79871 15914.56258 13948.93922 12017.62487 13063.05143 17545.54828 13339.76577 1.130684153 1.018509699 1.245302278 1.119944606 1.193016643 1.045665978 0.900887248 0.979256432 1.315281586 1 13.70344571 -6.345626834 7.888807635 1.037176335 1.139108037 0.140010595 0.113956691 0.613424882 51.8096135 0.04079616 0.03593864 4.51E-07 6.345626834 0.101931702 LLDIACWIHHK ddPTM_HeLa_A485_30min_R1 2 LLDIACWIHHK 11 0 F8WD96;C9JH19;A0A1B0GW44;A0A1B0GVP3;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;A0A1B0GU92;A0A1B0GU03;P07339;A0A1B0GV01;F8W787 F8WD96 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 0 ; ; 141.95 0.00020955 98254000 175045 193914 202940 191201 270360 244600 297390 310050 205250 283840 FALSE FALSE TRUE 213983.1564 216590.5555 278015.951 201645.8265 243442.0091 257406.8778 233850.197 234009.7514 246441.7923 213083.9117 1.004220143 1.016456633 1.304725208 0.946321216 1.142470153 1.208007098 1.097455905 1.098204691 1.156548096 1 17.70106214 -4.565369871 24.99999313 1.12249463 1.007276505 0.174955987 0.094523707 188.4232945 110859.6553 0.022727892 0.060132401 2.72E-05 4.565369871 -0.115218125 LLDIACWIHHK ddPTM_HeLa_A486_30min_R1 2 LLDIACWIHHK 11 0 F8WD96;C9JH19;A0A1B0GW44;A0A1B0GVP3;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;A0A1B0GU92;A0A1B0GU03;P07339;A0A1B0GV01;F8W787 F8WD96 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 0 ; ; 130.94 0.00045219 96957000 127528 157746 125646 58117 193546 156219 178050 172035 149017 182965 FALSE FALSE TRUE 118588.9458 145245.6325 174299.4961 135299.3131 169269.6559 136946.2881 133500.0068 132866.386 161933.9135 137149.3731 0.86466998 1.05903242 1.270873444 0.98651062 1.234199268 0.998519242 0.973391301 0.968771369 1.180712021 1 17.0653885 LLDLPAAAS(ph)SEDIER ddPTM_HeLa_A485_30min_R1 4 LLDLPAAASSEDIER 15 0 P22466 P22466 GAL Galanin peptides;Galanin;Galanin message-associated peptide 1 0 LLDLPAAAS(0.989)S(0.011)EDIER;LLDLPAAAS(0.987)S(0.013)EDIER;LLDLPAAAS(0.96)S(0.04)EDIER;LLDLPAAAS(0.986)S(0.014)EDIER ;;; 281.49 1.83E-58 275412000 286093 275730 299519 293899 327378 281951 301547 254731 243815 344906 TRUE FALSE FALSE 349733.4008 307974.225 410323.5421 309953.9582 294783.0968 296713.5184 237119.02 192257.8228 292746.4341 258927.2817 1.350701241 1.189423621 1.584705711 1.197069525 1.13847832 1.145933779 0.91577457 0.742516669 1.130612549 1 17.98218746 -6.135401149 1.21482198 0.932922283 1.350678436 0.592908738 0.139181489 0.310078019 0.946932576 0.066042959 0.066635105 7.32E-07 6.135401149 0.417756153 LLDLPAAAS(ph)SEDIER ddPTM_HeLa_A486_30min_R1 5 LLDLPAAASSEDIER 15 0 P22466 P22466 GAL Galanin peptides;Galanin;Galanin message-associated peptide 1 0 LLDLPAAAS(0.976)S(0.024)EDIER;LLDLPAAAS(0.975)S(0.025)EDIER;LLDLPAAAS(0.987)S(0.013)EDIER;LLDLPAAAS(0.989)S(0.011)EDIER;LLDLPAAAS(0.982)S(0.018)EDIER ;;;; 230.82 3.41E-34 344524000 386826 393971 398384 98047 406611 346773 350452 329116 354780 336337 TRUE FALSE FALSE 359711.495 362751.3031 552648.9539 228258.371 355610.0569 303991.673 262765.2029 254183.4714 385532.6161 252116.026 1.426769653 1.438826833 2.192042143 0.905370335 1.410501595 1.205761005 1.042239191 1.008200373 1.529187264 1 17.9437283 -5.282738149 24.9999613 1.165436735 1.661174408 0.449704566 0.267414831 734.3028387 861904.5304 0.07398979 0.109860475 5.22E-06 5.282738149 0.495737673 LLDLPAAAS(ph)SEDIERS ddPTM_HeLa_A485_30min_R1 4 LLDLPAAASSEDIERS 16 1 P22466 P22466 GAL Galanin peptides;Galanin;Galanin message-associated peptide 1 0 LLDLPAAAS(0.916)S(0.084)EDIERS;LLDLPAAAS(0.969)S(0.031)EDIERS;LLDLPAAAS(0.983)S(0.017)EDIERS;LLDLPAAAS(0.966)S(0.034)EDIERS ;;; 250.27 8.86E-42 627900000 470105 560409 604806 458746 819555 599404 670385 861327 481462 562565 TRUE FALSE FALSE 574678.2354 625943.9576 828548.9075 483806.1324 737957.2266 630787.8666 527151.7682 650085.2027 578087.0072 422327.8987 1.360739457 1.48212789 1.961861648 1.145569909 1.747356092 1.493597436 1.248204937 1.539290217 1.368810843 1 18.68800403 -9.386854212 0.345706497 0.849210297 1.552614887 0.324858375 0.218857927 8.838398328 1.168641199 1.810735311 0.190112035 4.10E-10 9.386854212 0.70340459 LLDLPAAAS(ph)SEDIERS ddPTM_HeLa_A486_30min_R1 5 LLDLPAAASSEDIERS 16 1 P22466 P22466 GAL Galanin peptides;Galanin;Galanin message-associated peptide 1 0 LLDLPAAAS(0.981)S(0.019)EDIERS;LLDLPAAAS(0.911)S(0.089)EDIERS;LLDLPAAAS(0.5)S(0.5)EDIERS;LLDLPAAAS(0.987)S(0.013)EDIERS;LLDLPAAAS(0.869)S(0.127)EDIERS(0.004) ;;;; 281.02 2.69E-58 630502000 579430 510344 586788 181906 739322 411500 533884 561371 442101 475578 TRUE FALSE FALSE 538814.9492 469902.4828 814008.0283 423486.361 646589.3409 360733.3138 400300.5764 433559.0779 480422.6706 356490.1733 1.511444044 1.318135865 2.283395418 1.187932776 1.813764836 1.011902546 1.122893719 1.21618802 1.347646321 1 18.44350278 -6.265553031 24.99819257 1.15218584 1.618526829 0.405848752 0.292109559 380.5356117 2312464.273 0.09820973 0.089733024 5.43E-07 6.265553031 0.46634099 LLDLVVQPVPRPSQCSEFIQQSS(ph)MKSPLYLVSR ddPTM_HeLa_A486_30min_R1 1 LLDLVVQPVPRPSQCSEFIQQSSMKSPLYLVSR 33 2 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LLDLVVQPVPRPSQCSEFIQQS(0.025)S(0.538)MKS(0.437)PLYLVSR 266.41 1.51E-64 227630000 144910 121850 83012 68232 146020 114930 167810 161560 92621 181410 TRUE FALSE FALSE 134752.5573 112194.1622 115156.4695 158847.5443 127704.81 100751.1051 125822.1631 124776.3148 100649.4629 135983.7552 0.990945993 0.825055626 0.846839899 1.168136179 0.939118131 0.740905448 0.925273485 0.917582506 0.740157989 1 17.05307479 -6.028812142 24.52520554 0.860813204 0.954505188 0.132817029 0.114455901 1208.79208 1028934.195 0.038436257 0.038511989 9.36E-07 6.028812142 0.093691984 LLDLVVQPVPRPSQCSEFIQQSSMKS(ph)PLYLVSR ddPTM_HeLa_A485_30min_R1 1 LLDLVVQPVPRPSQCSEFIQQSSMKSPLYLVSR 33 2 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LLDLVVQPVPRPSQCSEFIQQS(0.001)S(0.064)MKS(0.935)PLYLVSR 296.78 3.74E-93 288860000 61470 85387 67878 58926 110120 90995 128520 184790 80800 98791 TRUE FALSE FALSE 75143.78943 95372.26688 92988.89684 62144.97817 99156.06615 95759.35749 101060.6521 139469.9628 97015.81886 74164.22181 1.013208089 1.285960596 1.25382421 0.83793744 1.336979796 1.291179967 1.362660453 1.880555871 1.308121578 1 16.17843575 -6.339282291 1.812057641 1.453274768 1.12921332 0.178980063 0.241796751 0.499575865 3.239374573 0.102106208 0.088244171 4.58E-07 6.339282291 -0.324061448 LLDPEDIS(ph)VDHPDEK ddPTM_HeLa_A486_30min_R1 1 LLDPEDISVDHPDEK 15 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 LLDPEDIS(1)VDHPDEK 88.385 0.00071495 0 88447 111810 58508 36763 91524 93330 112180 122390 78394 106030 TRUE FALSE FALSE 82247.32204 102949.7684 81163.8645 85586.1219 80044.20649 81815.89351 84111.37748 94524.46875 85189.25504 79479.39786 1.034825681 1.295301313 1.021193752 1.07683405 1.007106353 1.029397501 1.058278997 1.18929523 1.07184072 1 16.27829332 -4.807484692 24.9999799 1.061526833 1.16506638 0.23652602 0.077463603 156.0356483 84717.91271 0.019803105 0.041223709 1.56E-05 4.807484692 0.103539547 LLDPSAEIIVLKEPPTIRPNS(ph)PYDLCSR ddPTM_HeLa_A485_30min_R1 1 LLDPSAEIIVLKEPPTIRPNSPYDLCSR 28 2 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 0 LLDPSAEIIVLKEPPTIRPNS(1)PYDLCSR 210.9 2.95E-29 273300000 71597 104260 88196 85012 149890 119510 154520 200260 97738 121670 TRUE FALSE FALSE 87523.50564 116452.3001 120823.3705 89655.9903 134966.4253 125767.3588 121505.5397 151145.921 117353.1201 91339.90817 0.958217579 1.274933404 1.322788395 0.98156427 1.477628213 1.376915757 1.330256863 1.654763225 1.284795687 1 16.47895772 -5.775066159 24.99972769 1.386750759 1.157873735 0.231845323 0.188466503 317.3833438 582270.418 0.056066041 0.063906782 1.68E-06 5.775066159 -0.228877024 LLDPSAEIIVLKEPPTIRPNS(ph)PYDLCSR ddPTM_HeLa_A486_30min_R1 2 LLDPSAEIIVLKEPPTIRPNSPYDLCSR 28 2 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 0 LLDPSAEIIVLKEPPT(0.016)IRPNS(0.941)PY(0.043)DLCS(0.001)R;LLDPSAEIIVLKEPPTIRPNS(0.998)PYDLCS(0.001)R ; 183.55 1.18E-20 495380000 230664 272070 214744 95334 381360 257157 335470 348480 207840 293940 TRUE FALSE FALSE 214495.6448 250510.1823 297898.6278 221942.3699 333526.2728 225431.5839 251531.8578 269138.7113 225855.7385 220335.5108 0.973495575 1.136948744 1.352022771 1.007292783 1.513720015 1.023128696 1.141585652 1.221494939 1.025053736 1 17.7493425 -7.81994093 6.776417344 1.007091695 1.176029362 0.141822545 0.155862288 0.427916355 37.86210901 0.141666468 0.037182382 1.51E-08 7.81994093 0.168937668 LLDPSSPLALALS(ph)ARDR ddPTM_HeLa_A485_30min_R1 1 LLDPSSPLALALSARDR 17 1 A0A590UJF3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;Q9UPX8;Q9UPX8-3 A0A590UJF3 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 0 LLDPS(0.12)S(0.12)PLALALS(0.761)ARDR 43.791 0.03283 538020000 303100 307390 292830 327960 430950 399750 565940 625760 336470 526660 TRUE FALSE FALSE 370523.5493 343336.5866 401160.0027 345875.6244 388043.1048 420680.2919 445022.2957 472291.3788 403996.4427 395373.3545 0.937148508 0.868385749 1.014635908 0.874807623 0.98145993 1.064007696 1.125574829 1.194545291 1.021809988 1 18.59285612 -6.215199002 2.570022766 1.100528457 0.926217671 0.573590121 0.063651554 0.189888417 2.473940496 0.022903848 0.021869859 6.09E-07 6.215199002 -0.174310787 LLDQPS(ph)GPRSPPGPHGLGPLLCPPGAFLPGLK ddPTM_HeLa_A486_30min_R1 1 LLDQPSGPRSPPGPHGLGPLLCPPGAFLPGLK 32 1 Q9UM47 Q9UM47 NOTCH3 Neurogenic locus notch homolog protein 3;Notch 3 extracellular truncation;Notch 3 intracellular domain 1 0 LLDQPS(0.5)GPRS(0.5)PPGPHGLGPLLCPPGAFLPGLK 97.893 0.00010816 125680000 42017 47048 41042 15658 75772 56407 48326 58806 57513 76109 TRUE FALSE FALSE 39071.82528 43319.74513 56934.56154 36452.61531 66267.96921 49448.07784 36234.32366 45417.15753 62498.27315 57050.81101 0.68486012 0.759318656 0.997962352 0.638949993 1.161560511 0.866737509 0.635123726 0.796082592 1.095484394 1 15.79995978 -1 0.069087378 1.15256931 0.173000954 0.137214762 0.168549247 649.3013652 3.323641305 8.345209954 62.02608515 0.1 1 -0.979568356 LLDRS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 LLDRSPSR 8 1 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 LLDRS(0.999)PS(0.001)R;LLDRS(1)PSR ; 146.71 0.00014801 619830000 398710 589710 556980 447640 729830 568600 628570 766830 597690 616010 TRUE FALSE FALSE 487401.664 658671.4547 763030.0799 472093.4397 657165.5626 598371.0168 494270.8846 578763.7402 717640.9007 462450.0438 1.053955277 1.424308341 1.649972986 1.020852838 1.421052006 1.293914932 1.06880925 1.25151624 1.551823619 1 18.818938 -5.273539777 24.99601612 1.244133314 1.38090184 0.088101398 0.21210317 1992.837746 4116637.452 0.059287829 0.088670724 5.33E-06 5.273539777 0.136768526 LLDRS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 LLDRSPSR 8 1 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 LLDRS(0.998)PS(0.002)R;LLDRS(0.996)PS(0.004)R ; 107.06 0.00048339 578890000 203465 242864 228774 81272 311094 216478 244613 259162 214456 243023 TRUE FALSE FALSE 189203.1542 223618.5721 317361.4196 189205.3233 272073.6897 189771.1453 183408.2401 200156.4701 233045.2188 182168.459 1.038616428 1.227537266 1.742131549 1.038628335 1.493527975 1.041734373 1.006805685 1.098743829 1.279284131 1 17.47491366 -6.286083577 24.48334493 1.086578323 1.312756791 0.2246727 0.206822786 947.589668 941401.015 0.072360303 0.063846288 5.18E-07 6.286083577 0.226178467 LLDS(ph)STVTHLFK ddPTM_HeLa_A486_30min_R1 2 LLDSSTVTHLFK 12 0 G3V3U4;G3V3I1;G3V295;G3V5Z7;P60900;P60900-2 G3V3U4 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 1 0 LLDS(0.468)S(0.468)T(0.051)VT(0.014)HLFK;LLDS(0.417)S(0.417)T(0.159)VT(0.008)HLFK ; 89.26 0.0016529 48189000 234265 240175 104243 163776 184722 319420 356500 330690 228310 450600 TRUE FALSE FALSE 217844.2332 221142.6583 144608.6813 381278.8048 161552.4443 280013.208 267299.9293 255399.1059 248100.0946 337766.8271 0.644954495 0.654719885 0.428131687 1.128822531 0.478295769 0.829013348 0.791374131 0.756140288 0.734530672 1 18.36566812 -14 0.05814668 2.022388439 0.269400117 0.219525266 0.17920693 661.5996585 2.81094675 98.37383527 17.27818288 1.00E-14 14 -1.752988322 LLEAIS(ph)SLDGK ddPTM_HeLa_A485_30min_R1 1 LLEAISSLDGK 11 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 LLEAIS(0.711)S(0.289)LDGK 80.245 0.0070128 27319000 98836 93465 69114 131110 132710 106090 142680 139420 94898 193600 TRUE FALSE FALSE 120821.7272 104394.9187 94682.14467 138272.2073 119496.9264 111644.7084 112195.2524 105227.0264 113943.1581 145339.0829 0.831309272 0.718285244 0.651456874 0.951376633 0.822194031 0.768167145 0.771955142 0.724010529 0.783981541 1 17.14906318 -10.66016321 2.288376193 1.036921525 0.778695713 0.430252016 0.075824028 2937439.488 2116731.387 632646.6528 0.020614601 2.19E-11 10.66016321 -0.258225811 LLEAISS(ph)LDGK ddPTM_HeLa_A485_30min_R1 1 LLEAISSLDGK 11 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 LLEAIS(0.346)S(0.654)LDGK 145.6 9.19E-07 25673000 101770 80387 76213 125300 134490 105040 134450 130640 88786 183500 TRUE FALSE FALSE 124408.3854 89787.56038 104407.3602 132144.8217 121099.7034 110539.732 105723.6591 98600.33516 106604.5358 137756.8271 0.903101415 0.651783017 0.757910605 0.959261508 0.879083135 0.802426525 0.767465841 0.715756433 0.773860273 1 17.07176429 -11.35941675 2.113257309 2.155706826 0.798989212 0.321861059 0.086523648 4510255.218 475315.6068 24922841.39 0.022944415 4.37E-12 11.35941675 -1.356717614 LLEAISS(ph)LDGK ddPTM_HeLa_A486_30min_R1 2 LLEAISSLDGK 11 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 LLEAIS(0.199)S(0.801)LDGK;LLEAIS(0.267)S(0.733)LDGK ; 180.09 2.06E-10 68749000 272360 277250 159194 135019 286880 294120 384770 335930 212321 389690 TRUE FALSE FALSE 253268.9705 255279.7003 220838.1802 314331.0555 250896.8354 257834.4648 288496.4763 259446.0723 230725.1552 292109.0875 0.867035574 0.873919064 0.756012701 1.07607421 0.858914858 0.88266499 0.987632664 0.888182133 0.78985956 1 18.15614772 -5.206903281 24.9999994 0.919475198 0.836482217 0.212358682 0.082015492 551.0237611 252594.7749 0.021905978 0.037942253 6.21E-06 5.206903281 -0.082992981 LLEAQIATGGIIDPEESHRLPVEVAYKR ddPTM_HeLa_A485_30min_R1 2 LLEAQIATGGIIDPEESHRLPVEVAYKR 28 2 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 104.87 6.84E-08 23056000 20714.9 29653 25781.1 19527.8 30284 32873 40181 55582 25752 29503 FALSE FALSE TRUE 25322.85804 33120.6604 35318.60173 20594.55427 27268.81863 34594.17945 31596.0011 41950.42735 30920.19019 22148.44506 1.143324417 1.495394386 1.594631209 0.929841992 1.231184336 1.561923618 1.426556176 1.894057449 1.396043384 1 14.4349178 -6.262342321 24.92887666 1.509772223 1.289055365 0.080553651 0.268271317 167.2534213 4617554.199 0.091574115 0.085508168 5.47E-07 6.262342321 -0.220716858 LLEAQIATGGIIDPVHSHRVPVDVAYQR ddPTM_HeLa_A485_30min_R1 1 LLEAQIATGGIIDPVHSHRVPVDVAYQR 28 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 66.012 0.0046808 10949000 4078.6 4983.6 6305.5 5959.7 9171.5 6086.9 7328 8267.5 5452.4 8501.1 FALSE FALSE TRUE 4985.870499 5566.388668 8638.166844 6285.26332 8258.353257 6405.600672 5762.312936 6239.882662 6546.646668 6381.932221 0.781247799 0.872210559 1.35353472 0.984852722 1.294020834 1.003708665 0.902910394 0.97774192 1.025809495 1 12.63977757 -6.510529893 24.68205373 0.971696152 1.068296361 0.049491506 0.163896069 1580.048898 3158108.979 0.061957675 0.051866291 3.09E-07 6.510529893 0.096600209 LLEAQIATGGVIDPVHSHR ddPTM_HeLa_A485_30min_R1 2 LLEAQIATGGVIDPVHSHR 19 0 A0A075B730;P58107;Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 A0A075B730;P58107;Q15149;Q15149-3;Q15149-4 EPPK1;PLEC Epiplakin;Plectin 0 0 ; ; 122.22 7.44E-07 69801000 37191 41261 48294 45892 64563 43389 52117 45880 51614 69287 FALSE FALSE TRUE 45464.00964 46086.11503 66159.96028 48398.96376 58134.88103 45660.78095 40981.77719 34627.85806 61972.45637 52015.02603 0.874055309 0.886015418 1.271939386 0.930480429 1.117655521 0.877838279 0.787883431 0.665727977 1.191433728 1 15.66664083 -6.298543988 20.79975868 0.876390963 1.018270672 0.086161658 0.169401161 162.1237725 90879.9347 0.059215297 0.052228594 5.03E-07 6.298543988 0.141879709 LLEAQIATGGVIDPVHSHR ddPTM_HeLa_A486_30min_R1 2 LLEAQIATGGVIDPVHSHR 19 0 A0A075B730;P58107;Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 A0A075B730;P58107;Q15149;Q15149-3;Q15149-4 EPPK1;PLEC Epiplakin;Plectin 0 0 ; ; 161.95 1.13E-14 76567000 72193 90235 88453 30303 110444 91534 97486 96762 87612 84827 FALSE FALSE TRUE 67132.64351 83084.44997 122704.3705 70546.91543 96591.08367 80241.46573 73093.9717 74731.4049 95206.2787 63585.76707 1.055780981 1.30665169 1.929745855 1.109476518 1.51906768 1.261940674 1.149533537 1.175285105 1.497289143 1 15.95641625 -6.474612838 9.999819094 1.21806195 1.394586228 0.100651205 0.252536389 1.549640711 315.9824079 0.08912124 0.078246783 3.35E-07 6.474612838 0.176524278 LLEAQSLMPCS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LLEAQSLMPCSPK 13 0 Q5T0C7;A0A0A0MR87;E9PSF2;Q15468;Q15468-2;H0Y702 Q5T0C7 STIL SCL-interrupting locus protein 1 0 LLEAQS(0.024)LMPCS(0.976)PK 71.344 0.010257 29627000 69667 72174 43471 102940 99235 56337 103370 109160 67459 121690 TRUE FALSE FALSE 85164.1838 80614.12147 59552.73188 108563.3515 89354.81496 59286.71821 81284.15504 82388.33884 80997.40253 91354.92254 0.932234207 0.88242778 0.651883119 1.18836893 0.978106187 0.648971249 0.88976218 0.901848927 0.886623296 1 16.47919485 -8.639705004 1.579044379 0.999993855 0.881916854 0.053260252 0.146051802 20.85018896 47.43144834 0.14336962 0.040945164 2.29E-09 8.639705004 -0.118077001 LLEDGEDFNLGDALDSSNS(ph)MQTIQK ddPTM_HeLa_A485_30min_R1 2 LLEDGEDFNLGDALDSSNSMQTIQK 25 0 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 LLEDGEDFNLGDALDS(0.008)S(0.356)NS(0.636)MQTIQK;LLEDGEDFNLGDALDS(0.075)S(0.373)NS(0.54)MQT(0.013)IQK ; 244.16 2.24E-49 227835000 112089 80409 65842 105128 127896 89815 131536 139580 96828 143258 TRUE FALSE FALSE 137022.8113 89812.13308 90199.69571 110870.8764 115162.2252 94517.57452 103432.259 105347.7861 116260.4914 107546.4171 1.274080672 0.835101118 0.838704795 1.030911856 1.07081415 0.878853774 0.96174528 0.979556447 1.081026171 1 16.71459994 -7.660316412 8.190663782 1.040048594 0.973860692 0.028022867 0.123601969 0.85447232 60.28784355 0.083101045 0.031038457 2.19E-08 7.660316412 -0.066187901 LLEDGEDFNLGDALDSSNS(ph)MQTIQK ddPTM_HeLa_A486_30min_R1 3 LLEDGEDFNLGDALDSSNSMQTIQK 25 0 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 LLEDGEDFNLGDALDS(0.031)S(0.22)NS(0.748)MQTIQK;LLEDGEDFNLGDALDS(0.056)S(0.357)NS(0.587)MQTIQK;LLEDGEDFNLGDALDS(0.312)S(0.203)NS(0.485)MQTIQK ;; 272.24 3.19E-75 290400000 130507 148897 97679 65043 149954 147693 186853 176371 116189 173685 TRUE FALSE FALSE 121359.1332 137097.8594 135502.9247 151423.3911 131145.3711 129472.1393 140100.4031 136215.1735 126260.3561 130193.1455 0.932146871 1.053034389 1.040783862 1.163067307 1.007313945 0.994462026 1.076096614 1.04625457 0.969792654 1 16.99029397 -9.771609629 10.30040612 0.999999873 1.036172629 0.018800055 0.059919671 0 0 0.058130313 0.014098672 1.69E-10 9.771609629 0.036172756 LLEDS(ph)DS(ph)EDEAAPSPLQPALRPNPTAILDEAPKPK ddPTM_HeLa_A485_30min_R1 1 LLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPK 35 2 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 2 0 LLEDS(1)DS(1)EDEAAPSPLQPALRPNPTAILDEAPKPK 309.06 1.93E-110 567530000 219130 140590 105540 318820 232170 219270 351300 343800 173330 428720 TRUE FALSE FALSE 267874.7125 157030.7775 144583.6379 336236.3293 209054.3396 230750.6381 276241.8851 259482.5109 208115.7411 321847.994 0.832301948 0.487903546 0.449229576 1.044705375 0.649543709 0.716955341 0.858299229 0.806226901 0.64662743 1 18.29601995 -13.99999999 0.077124691 1.896530936 0.433339556 0.204873781 0.167305791 421.9533116 2.311228039 65.68442144 6.646898873 1.00E-14 13.99999999 -1.46319138 LLEDS(ph)DS(ph)EDEAAPSPLQPALRPNPTAILDEAPKPK ddPTM_HeLa_A486_30min_R1 1 LLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPK 35 2 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 2 0 LLEDS(1)DS(1)EDEAAPSPLQPALRPNPTAILDEAPKPK 327.68 7.81E-129 308820000 66346 62141 27990 36087 63148 81903 97550 98026 52143 102770 TRUE FALSE FALSE 61695.48801 57216.72085 38828.4776 84012.35974 55227.38901 71798.64059 73141.95822 75707.61969 56662.79722 77035.72308 0.800868552 0.742729718 0.504032104 1.090563655 0.71690622 0.932017481 0.949455075 0.982759902 0.73553924 1 16.23323999 -5.261821593 24.99999999 0.908452638 0.688562092 0.406503796 0.128643198 35.3367532 2311390.897 0.034521877 0.05497702 5.47E-06 5.261821593 -0.219890546 LLEDS(ph)EES(ph)S(ph)EETVSR ddPTM_HeLa_A486_30min_R1 1 LLEDSEESSEETVSR 15 0 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 3 0 LLEDS(1)EES(1)S(1)EETVSR 133.86 3.72E-06 0 308340 354170 269350 218350 340430 342560 371060 379340 272510 494040 TRUE FALSE FALSE 286726.9583 326104.2793 373649.5334 508329.8348 297730.095 300298.4301 278216.8633 292972.5629 296131.3862 370329.1683 0.774248919 0.880579515 1.008965983 1.372643254 0.803960694 0.81089597 0.751269106 0.791113928 0.7996437 1 18.49844866 LLEDS(ph)EES(ph)SEETVSR ddPTM_HeLa_A485_30min_R1 8 LLEDSEESSEETVSR 15 0 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 2 0 LLEDS(1)EES(0.928)S(0.072)EETVSR;LLEDS(1)EES(0.957)S(0.043)EETVSR;LLEDS(1)EES(0.968)S(0.032)EETVSR;LLEDS(1)EES(0.988)S(0.012)EETVSR;LLEDS(1)EES(0.991)S(0.009)EETVSR;LLEDS(1)EES(0.98)S(0.02)EETVSR;LLEDS(1)EES(0.982)S(0.018)EETVSR;LLEDS(1)EES(0.995)S(0.005)EETVSR ;;;;;;; 328.02 6.28E-90 7735197000 3364228 4189671 3985594 3823040 5300050 4180980 5202690 5675300 3904650 5055480 TRUE FALSE FALSE 4112588.912 4679616.578 5460031.075 4031882.995 4772358.412 4399889.648 4091092.779 4283423.776 4688277.439 3795241.875 1.083617078 1.233021961 1.438651673 1.062352052 1.257458304 1.159317322 1.077953109 1.128629984 1.235303992 1 21.8557604 -6.484696411 5.788738334 1.120599068 1.219371361 0.162996791 0.110640295 0.392602547 36.19205883 0.040211509 0.034316637 3.28E-07 6.484696411 0.098772293 LLEDS(ph)EES(ph)SEETVSR ddPTM_HeLa_A486_30min_R1 4 LLEDSEESSEETVSR 15 0 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 2 0 LLEDS(1)EES(0.988)S(0.012)EETVSR;LLEDS(1)EES(0.994)S(0.006)EETVSR;LLEDS(1)EES(0.896)S(0.103)EET(0.001)VSR;LLEDS(1)EES(0.959)S(0.041)EETVSR ;;; 288.41 5.04E-59 5213840000 3632020 4122740 3368400 1457680 4573760 3863240 4258270 4342900 3405540 3986060 TRUE FALSE FALSE 3377434.154 3796039.068 4672734.689 3393552.707 4000076.372 3386632.727 3192805.807 3354116.475 3700734.949 2987924.631 1.130361228 1.270460114 1.563873011 1.135755792 1.338747414 1.13343981 1.068569727 1.122557256 1.238563688 1 21.51071233 -6.314856816 6.655072364 1.116500338 1.293664923 0.326103124 0.125785636 0.301214482 30.5788018 0.044647415 0.03950965 4.84E-07 6.314856816 0.177164585 LLEEEIQAPT(ph)SSKR ddPTM_HeLa_A485_30min_R1 1 LLEEEIQAPTSSKR 14 1 Q8N7H5;Q8N7H5-3;Q8N7H5-2;B4DGJ5 Q8N7H5 PAF1 RNA polymerase II-associated factor 1 homolog 1 0 LLEEEIQAPT(0.454)S(0.454)S(0.092)KR 63.145 0.019177 250280000 130430 99235 98048 133810 136230 105910 121810 120660 84289 159810 TRUE FALSE FALSE 159443.7035 110839.67 134320.0353 141119.7015 122666.4629 111455.2838 95784.2984 91067.94581 101205.0292 119972.3081 1.329004218 0.923877116 1.119591991 1.176268955 1.022456472 0.929008415 0.798386727 0.759074717 0.84356991 1 16.87234192 -6.266222831 2.063783955 0.832452566 1.119466409 0.568270701 0.111341026 0.233157992 1.95067114 0.043078267 0.039459272 5.42E-07 6.266222831 0.287013843 LLEEEIQAPT(ph)SSKR ddPTM_HeLa_A486_30min_R1 2 LLEEEIQAPTSSKR 14 1 Q8N7H5;Q8N7H5-3;Q8N7H5-2;B4DGJ5 Q8N7H5 PAF1 RNA polymerase II-associated factor 1 homolog 1 0 LLEEEIQAPT(0.459)S(0.459)S(0.083)KR;LLEEEIQAPT(0.429)S(0.429)S(0.142)KR ; 83.758 0.0024927 251070000 239310 242620 140740 84179 246470 281510 270210 263250 195746 277600 TRUE FALSE FALSE 222535.6048 223393.9076 195238.2971 195972.9662 215555.4344 246780.1584 202600.6 203313.7217 212713.4209 208087.1531 1.069434616 1.073559344 0.938252526 0.94178311 1.03589016 1.185946151 0.973633389 0.977060422 1.022232356 1 17.66682837 -8.912609893 0.003797394 2.27E-05 2.020100377 0.018360411 0.07024781 158647.8363 192.6549437 51906.48693 50575.79454 1.22E-09 8.912609893 2.020077644 LLEENETEAVTVPTPS(ph)PTPVR ddPTM_HeLa_A485_30min_R1 4 LLEENETEAVTVPTPSPTPVR 21 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 LLEENETEAVTVPT(0.008)PS(0.988)PT(0.003)PVR;LLEENETEAVTVPT(0.001)PS(0.974)PT(0.025)PVR;LLEENETEAVTVPT(0.001)PS(0.942)PT(0.058)PVR;LLEENETEAVTVPT(0.002)PS(0.984)PT(0.014)PVR ;;; 286.97 2.50E-73 2043820000 821890 1126570 1063950 805630 1212910 1096600 1266070 1367550 1044070 1188460 TRUE FALSE FALSE 1004716.595 1258312.562 1457549.38 849639.5269 1092148.422 1154016.28 995563.8017 1032156.218 1253605.272 892198.794 1.126112927 1.410349992 1.633659886 0.952298448 1.22410883 1.293451962 1.115854234 1.156867982 1.405073937 1 19.76700567 -5.264264765 24.9994478 1.176385391 1.392071831 0.272901786 0.168251404 348.0313506 3079442.046 0.04658714 0.072715409 5.44E-06 5.264264765 0.21568644 LLEENETEAVTVPTPS(ph)PTPVR ddPTM_HeLa_A486_30min_R1 7 LLEENETEAVTVPTPSPTPVR 21 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 LLEENETEAVTVPTPS(0.997)PT(0.003)PVR;LLEENETEAVTVPTPS(0.997)PT(0.003)PVR;LLEENETEAVTVPTPS(0.998)PT(0.002)PVR;LLEENETEAVTVPT(0.003)PS(0.995)PT(0.002)PVR;LLEENETEAVTVPT(0.001)PS(0.991)PT(0.008)PVR;LLEENETEAVTVPTPS(0.998)PT(0.001)PVR;LLEENETEAVTVPT(0.045)PS(0.942)PT(0.013)PVR ;;;;;; 313.81 5.69E-102 2985291000 1754148 2109466 2020352 680151 2598729 1833203 2114418 2181156 1869171 2128935 TRUE FALSE FALSE 1631191.284 1942304.232 2802686.401 1583425.901 2272772.177 1607041.053 1585368.252 1684554.393 2031192.247 1595835.819 1.022154826 1.217107806 1.75624984 0.992223562 1.424189224 1.007021545 0.9934407 1.055593798 1.272807781 1 20.6058808 -6.274267381 24.41200787 1.064726614 1.28896428 0.203933568 0.213782501 945.8611872 1799992.276 0.074948152 0.066549313 5.32E-07 6.274267381 0.224237666 LLEENETEAVTVPTPSPT(ph)PVR ddPTM_HeLa_A485_30min_R1 1 LLEENETEAVTVPTPSPTPVR 21 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 LLEENETEAVTVPT(0.002)PS(0.102)PT(0.895)PVR 156.67 2.15E-09 194400000 62260 93839 89632 72159 98053 91285 110490 114120 84720 103840 TRUE FALSE FALSE 76109.52221 104812.6548 122790.6067 76100.86345 88290.49904 96064.54145 86882.90888 86131.89107 101722.5269 77954.59903 0.976331392 1.344534589 1.575155388 0.976220318 1.132588714 1.23231397 1.114532176 1.104898135 1.304894492 1 16.25034652 -5.290053915 24.99828863 1.132528206 1.303260101 0.193697166 0.162869148 1174.300422 1025892.1 0.046021813 0.068275822 5.13E-06 5.290053915 0.170731895 LLEFQLALK ddPTM_HeLa_A485_30min_R1 2 LLEFQLALK 9 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 ; ; 159.11 1.32E-05 24314100 33294 36413 31273 31899 37641 34005 40882 34544 27251.5 46575 FALSE FALSE TRUE 40700.13544 40671.1836 42842.18408 33641.5616 33893.32987 35785.44922 32147.22672 26072.02984 32720.62608 34964.70965 1.164034704 1.163206673 1.225297865 0.962157614 0.969358253 1.02347337 0.919419239 0.745666991 0.935818613 1 15.0936119 -5.526544175 1.002145715 0.898240642 1.201300326 0.652544255 0.079378853 0.354803114 0.728227451 0.035061789 0.072952578 2.97E-06 5.526544175 0.303059684 LLEFQLALK ddPTM_HeLa_A486_30min_R1 1 LLEFQLALK 9 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 129.1 0.0024584 11236000 10831 13126 17512 4635.4 19611 12256 12468 13108 12117 13386 FALSE FALSE TRUE 10071.80283 12085.84796 24293.11539 10791.44546 17151.20551 10743.97933 9348.374527 10123.59455 13167.31132 10034.05847 1.003761624 1.204482512 2.421065759 1.07548162 1.70929894 1.070751118 0.931664346 1.008923216 1.312261769 1 13.29261763 -6.284227108 21.65449835 1.056961417 1.496849933 0.226021219 0.386276536 225.5460321 214327.3557 0.136992703 0.120977628 5.20E-07 6.284227108 0.439888516 LLEIVGR ddPTM_HeLa_A485_30min_R1 2 LLEIVGR 7 0 I3L3H5;H3BQ57;H3BT20;B4DED4;Q6PII5-3;Q6PII5-4;Q6PII5-2;Q6PII5 I3L3H5 HAGHL Hydroxyacylglutathione hydrolase-like protein 0 0 ; ; 153.61 0.0028006 351290000 202437 323410 326720 78940 746090 116172 428610 278380 229488 491040 FALSE FALSE TRUE 247468.4123 361229.9862 447587.324 83252.29231 671806.6599 122254.5863 337033.9721 210106.8685 275544.1366 368632.7649 0.671314207 0.979918283 1.214182152 0.225840729 1.822427966 0.331643299 0.914281106 0.569962544 0.747475978 1 18.49182478 LLEIVGR ddPTM_HeLa_A486_30min_R1 2 LLEIVGR 7 0 I3L3H5;H3BQ57;H3BT20;B4DED4;Q6PII5-3;Q6PII5-4;Q6PII5-2;Q6PII5 I3L3H5 HAGHL Hydroxyacylglutathione hydrolase-like protein 0 0 ; ; 148.28 0.0032051 273980000 441280 283200 275190 22923.7 334720 221720 333510 400110 321590 300270 FALSE FALSE TRUE 410348.5508 260758.2006 381750.9378 53367.5321 292736.2965 194366.4407 250062.2705 309013.6873 349465.6801 225080.4376 1.823119571 1.158511168 1.696064491 0.237104267 1.300585247 0.863542131 1.110990689 1.372903353 1.552625736 1 17.78008115 -3.803151105 1.247134596 1.110772342 3.03165184 0.224128075 0.382672183 6.228039606 3.831534457 0.111880484 20.26938035 0.000157344 3.803151105 1.920879498 LLELQEVDS(ph)LLR ddPTM_HeLa_A486_30min_R1 1 LLELQEVDSLLR 12 0 P16144-4;P16144-2;P16144-3;P16144 P16144-4 ITGB4 Integrin beta-4 1 0 LLELQEVDS(1)LLR 62.14 0.025468 5871700 6719 7581.6 7448.4 3267.4 9813.4 7530.8 10440 8224.3 9836.5 13646 TRUE FALSE FALSE 6248.032797 6980.806404 10332.61996 7606.672325 8582.511866 6601.726464 7827.801577 6351.806425 10689.13574 10228.95278 0.610818422 0.682455629 1.010134681 0.743641357 0.839041107 0.645396123 0.765259333 0.62096351 1.044988277 1 13.32037083 -7.7753679 24.99871199 1.022494417 0.747968625 0.498610326 0.113185033 230.1566982 413069.5618 0.108688739 0.028641212 1.68E-08 7.7753679 -0.274525793 LLELTSSYS(ph)PDVSDYKEGR ddPTM_HeLa_A485_30min_R1 2 LLELTSSYSPDVSDYKEGR 19 1 P38432 P38432 COIL Coilin 1 0 LLELTS(0.004)S(0.003)YS(0.992)PDVSDYKEGR;LLELT(0.001)S(0.005)S(0.005)YS(0.989)PDVSDYKEGR ; 183.01 2.04E-18 525690000 244475 336080 262110 321040 413780 364240 488960 603100 306240 457780 TRUE FALSE FALSE 298857.6203 375381.6325 359075.3963 338577.6023 372582.6103 383311.0432 384489.7016 455188.7794 367699.559 343663.8708 0.869621877 1.092292977 1.044844765 0.985199874 1.084148326 1.115366135 1.118795818 1.324517408 1.069939526 1 18.39063866 -6.109872932 1.573988595 1.152688644 1.005560785 0.26838908 0.094780445 0.47146394 2.347377414 0.038253759 0.039017025 7.76E-07 6.109872932 -0.147127859 LLELTSSYS(ph)PDVSDYKEGR ddPTM_HeLa_A486_30min_R1 2 LLELTSSYSPDVSDYKEGR 19 1 P38432 P38432 COIL Coilin 1 0 LLELTSSYS(1)PDVSDYKEGR;LLELTSSYS(1)PDVSDYKEGR ; 272.54 1.17E-69 472840000 348290 331852 237578 155387 376980 353960 413260 420470 261301 449390 TRUE FALSE FALSE 323876.6696 305554.8389 329574.5642 361748.7888 329695.6532 310292.014 309857.977 324738.1598 283950.7811 336859.819 0.961458302 0.907068228 0.978373037 1.073885244 0.978732501 0.921130977 0.919842497 0.964015717 0.842934553 1 18.36178883 -6.255299996 20.59971296 0.926726837 0.980993284 0.181437548 0.053241614 79.01148979 265108.9565 0.018452524 0.017911776 5.56E-07 6.255299996 0.054266446 LLEMILNKPGLK ddPTM_HeLa_A485_30min_R1 6 LLEMILNKPGLK 12 1 P52895;B4DK69;S4R3P0 P52895 AKR1C2 Aldo-keto reductase family 1 member C2 0 0 ;;;;; ;;;;; 193.23 2.37E-13 510398000 1080853 1135643 915984 1147916 1358728 1392559 1810707 1874577 1071687 1713528 FALSE FALSE TRUE 1321285.021 1268446.57 1254844.599 1210623.744 1223448.27 1465471.236 1423834.657 1414834.052 1286764.751 1286377.005 1.027136692 0.986061291 0.97548743 0.941111152 0.951080644 1.139223751 1.106856429 1.099859564 1.000301425 1 20.29488209 -6.248107135 24.9974348 1.07783997 0.974738413 0.494722279 0.046616423 627.2748747 1176116.459 0.015673373 0.015584287 5.65E-07 6.248107135 -0.103101557 LLEMILNKPGLK ddPTM_HeLa_A486_30min_R1 6 LLEMILNKPGLK 12 1 P52895;B4DK69;S4R3P0 P52895 AKR1C2 Aldo-keto reductase family 1 member C2 0 0 ;;;;; ;;;;; 189.33 6.77E-10 542850000 1242289 1245203 767412 436590.8 1885511 1274342 1505312 1396071 1126275.1 1701489.3 FALSE FALSE TRUE 1155210.956 1146528.579 1064574.478 1016405.446 1649012.629 1117126.641 1128667.016 1078216.109 1223901.533 1275425.304 0.905745677 0.898938241 0.834681949 0.796914914 1.292911959 0.875885586 0.884933843 0.845377699 0.959602674 1 20.28254698 LLEMNLMHAPQVADAILGNQMFTHYDR ddPTM_HeLa_A485_30min_R1 6 LLEMNLMHAPQVADAILGNQMFTHYDR 27 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ;;;;; ;;;;; 134.69 6.10E-13 84817500 36798.9 45822.5 50516.6 43284.6 62267.9 49862.6 59118.8 67439.4 43784 65656.7 FALSE FALSE TRUE 44984.68835 51181.04277 69204.79251 45649.1281 56068.28924 52473.32863 46487.58542 50899.78141 52571.04719 49289.69301 0.91265913 1.038372115 1.404041865 0.926139428 1.137525633 1.064590291 0.943150232 1.032665823 1.066572826 1 15.58899838 -6.535312387 23.62615629 1.011969462 1.091344201 0.064596222 0.130471755 351.2577579 667441.5596 0.050170424 0.038896472 2.92E-07 6.535312387 0.079374739 LLEMNLMHAPQVADAILGNQMFTHYDR ddPTM_HeLa_A486_30min_R1 3 LLEMNLMHAPQVADAILGNQMFTHYDR 27 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ;; ;; 129.73 1.59E-12 43308000 24747 25365 25359.8 10977.2 31391.5 25806.7 29349.7 30828.4 23999.8 33266.5 FALSE FALSE TRUE 23012.36309 23354.98502 35179.79372 25555.47636 27454.08536 22622.93174 22006.09463 23809.4463 26080.12199 24936.35187 0.922844016 0.936583873 1.410783498 1.02482819 1.100966392 0.907227002 0.88249054 0.954808724 1.04586758 1 14.6059628 -6.253600495 23.97736595 0.95053005 1.086678535 0.169847282 0.13285449 607.6577964 1858687.953 0.046100986 0.045237935 5.58E-07 6.253600495 0.136148486 LLEPLVTQVTTLVNT(ph)NSKGPSNK ddPTM_HeLa_A485_30min_R1 1 LLEPLVTQVTTLVNTNSKGPSNK 23 1 G3XAM7;P35221;P35221-2;E5RIE0;E5RJL0;E5RIB1;E5RG03;E5RGY6;E5RHV7;E5RFM3 G3XAM7 CTNNA1 Catenin alpha-1 1 0 LLEPLVT(0.024)QVT(0.12)T(0.12)LVNT(0.367)NS(0.367)KGPS(0.001)NK 61.37 0.023139 59215000 17526 10242 7546.1 22432 17097 15418 22422 24637 11750 32445 TRUE FALSE FALSE 21424.59824 11439.71281 10337.71641 23657.40336 15394.76265 16225.26264 17631.35653 18594.73712 14108.11722 24357.05861 0.879605316 0.469667253 0.424423843 0.971275052 0.632045228 0.666142119 0.723870514 0.763422933 0.579220892 1 14.5720523 -14 0.317357419 3.996557357 0.662056615 0.257530494 0.160876858 444.7668224 3.976452833 894.195004 0.146936516 1.00E-14 14 -3.334500742 LLEPVLLLGK ddPTM_HeLa_A485_30min_R1 1 LLEPVLLLGK 10 0 M0QX76;M0R1M5;M0R3H0;M0R210;Q6IPX4;P62249 M0QX76 RPS16 40S ribosomal protein S16 0 0 114.89 0.0035611 0 13059 17633 16225 16246 23923 16446 19879 22716 16757 25952 FALSE FALSE TRUE 15963.9295 19695.02596 22227.30268 17133.47784 21541.14212 17307.08713 15631.68925 17144.86538 20119.9762 19482.64401 0.819392352 1.010901085 1.140877114 0.87942262 1.105658047 0.888333592 0.802339213 0.880007117 1.032712818 1 14.24990186 LLES(ph)PGVEAGEGEAEKEEAGAQGRPLR ddPTM_HeLa_A485_30min_R1 4 LLESPGVEAGEGEAEKEEAGAQGRPLR 27 2 A0A0G2JHC2;Q6NYC8;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LLES(1)PGVEAGEGEAEKEEAGAQGRPLR;LLES(1)PGVEAGEGEAEKEEAGAQGRPLR;LLES(1)PGVEAGEGEAEKEEAGAQGRPLR;LLES(1)PGVEAGEGEAEKEEAGAQGRPLR ;;; 205.89 8.16E-29 2220730000 716800 769920 654289 893920 968330 819450 1108250 1109050 731370 1267770 TRUE FALSE FALSE 876249.6871 859955.4466 896337.7283 942752.5861 871919.6652 862355.1349 871463.3339 837053.7486 878149.2505 951738.2706 0.920683463 0.903562958 0.94179015 0.99055866 0.91613387 0.906084332 0.915654399 0.879499937 0.922679352 1 19.86020536 -5.920723634 24.99999084 0.916046479 0.938864376 0.021429281 0.035755913 85.94473417 27097.78969 0.011031565 0.012508619 1.20E-06 5.920723634 0.022817897 LLES(ph)PGVEAGEGEAEKEEAGAQGRPLR ddPTM_HeLa_A486_30min_R1 2 LLESPGVEAGEGEAEKEEAGAQGRPLR 27 2 A0A0G2JHC2;Q6NYC8;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LLES(1)PGVEAGEGEAEKEEAGAQGRPLR;LLES(1)PGVEAGEGEAEKEEAGAQGRPLR ; 249.97 8.09E-51 4127200000 1539000 1565800 929790 815090 1645560 1773810 2305100 2124000 1205350 2411800 TRUE FALSE FALSE 1431124.047 1441720.305 1289829.589 1897570.712 1439158.521 1554975.357 1728339.599 1640411.567 1309830.709 1807869.582 0.791608013 0.797469198 0.713452785 1.049617036 0.796052179 0.860114785 0.956009004 0.907372735 0.72451615 1 20.78585918 -5.219896036 24.99981773 0.891691594 0.770505918 0.300785947 0.091418175 666.2959145 400960.543 0.024028629 0.04161825 6.03E-06 5.219896036 -0.121185676 LLESSLSS(ph)SEGEEPVEYK ddPTM_HeLa_A486_30min_R1 2 LLESSLSSSEGEEPVEYK 18 0 P08648 P08648 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain 1 0 LLESSLS(0.041)S(0.957)S(0.002)EGEEPVEYK;LLESSLS(0.027)S(0.97)S(0.003)EGEEPVEYK ; 171.08 2.43E-12 84031000 130093 144661 91312 55440 162751 169875 175915 163155 147386 248760 TRUE FALSE FALSE 120974.1525 133197.5355 126670.4518 129067.1218 142337.252 148917.5497 131899.2064 126008.1681 160161.5371 186468.8768 0.648763239 0.714315106 0.679311497 0.692164419 0.763329808 0.798618795 0.707352394 0.675759785 0.858918335 1 17.50857533 -14 0.162594974 2.065882249 0.651117363 0.771080182 0.048781536 64.68670223 0.59844654 22.09268898 0.206188938 1.00E-14 14 -1.414764885 LLEVEHPAAK ddPTM_HeLa_A485_30min_R1 2 LLEVEHPAAK 10 0 P17987;E7ERF2;F5H726;F5GZI8;F5H676;F5H136 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 ; ; 71.889 0.032712 25647000 39916 45433 45776 48930 67934 53119 63657 68281 51760 67739 FALSE FALSE TRUE 48795.17649 50745.99414 62710.4473 51602.922 61170.25243 55900.2287 50056.16192 51534.97769 62147.75723 50852.91394 0.959535506 0.997897469 1.233173135 1.014748576 1.202885886 1.099253206 0.984332225 1.013412481 1.222108084 1 15.63404282 -2.644485357 11.41167733 1.07577063 1.037608415 0 0.102073088 0 0 0.022982495 0 0.00226733 2.644485357 -0.038162214 LLEVIILQCK ddPTM_HeLa_A486_30min_R1 1 LLEVIILQCK 10 0 O95373;O15397;O15397-2 O95373;O15397 IPO7;IPO8 Importin-7;Importin-8 0 0 138.1 0.0018546 7066900 8179.8 12839 9153.8 5160.7 12442 11643 12572 13029 9710.7 12558 FALSE FALSE TRUE 7606.438261 11821.59088 12698.39651 12014.37041 10881.40834 10206.60504 9426.352627 10062.58112 10552.43129 9413.395061 0.808044092 1.25582649 1.348970953 1.276305767 1.155949397 1.084263963 1.001376503 1.068964073 1.121001639 1 13.20049943 -6.251197199 3.271639818 1.053315491 1.192554286 0.13840386 0.139431907 0.475812427 10.64527574 0.052120151 0.04891594 5.61E-07 6.251197199 0.139238795 LLFNAGNIANHFFTVPFLR ddPTM_HeLa_A485_30min_R1 2 LLFNAGNIANHFFTVPFLR 19 0 Q16222-2;Q16222-3;Q16222 Q16222-2 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 0 ; ; 265.43 7.50E-48 114094000 44418 56364 57488 38485 60644 48728 71998 74811 31661.8 58979 FALSE FALSE TRUE 54298.63086 62955.2795 78755.20348 40587.3381 54606.07043 51279.32273 56615.03913 56463.48495 38016.03284 44276.62073 1.226349933 1.42186279 1.778708541 0.916676509 1.233293542 1.158158005 1.278666669 1.275243775 0.858602852 1 15.4342575 -6.270714202 0.344791267 0.977982972 1.481326083 0.270337812 0.215112759 2.750939938 0.679762559 0.265615099 0.514593838 5.36E-07 6.270714202 0.503343111 LLFNAGNIANHFFTVPFLR ddPTM_HeLa_A486_30min_R1 2 LLFNAGNIANHFFTVPFLR 19 0 Q16222-2;Q16222-3;Q16222 Q16222-2 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase 0 0 ; ; 279.93 6.08E-59 92541000 30221.3 45692.1 50329 17257.9 60614 53729 66534 58183 48803 57870 FALSE FALSE TRUE 28102.94293 42071.29159 69817.73666 40177.26337 53011.22692 47100.46226 49886.48948 44936.00103 53033.28333 43378.97533 0.64784709 0.969854435 1.609483307 0.926192079 1.22204885 1.085790107 1.150015396 1.035893556 1.222557309 1 15.40470835 -4.518587372 24.99569034 1.158507315 0.728348757 0.42917579 0.178182145 135.1223324 787028.3201 0.043116473 0.120652172 3.03E-05 4.518587372 -0.430158557 LLGEGS(ph)PKPGITASSNVNGR ddPTM_HeLa_A486_30min_R1 1 LLGEGSPKPGITASSNVNGR 20 1 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 LLGEGS(1)PKPGITASSNVNGR 89.272 0.00031171 321880000 232830 224590 141460 110130 198630 238330 276520 252480 179320 319130 TRUE FALSE FALSE 216509.8193 206792.6705 196237.1004 256388.2057 173715.9732 208927.2678 207331.7713 194995.8156 194863.602 239217.7708 0.905074145 0.86445363 0.820328271 1.071777422 0.726183396 0.873376869 0.866707229 0.815139339 0.814586648 1 17.86796504 -5.800454497 24.99999722 0.84216038 0.904978885 0.110878153 0.088352366 366.9652191 235140.9837 0.02633628 0.029862986 1.58E-06 5.800454497 0.062818505 LLGGT(ph)RTPINDAS ddPTM_HeLa_A486_30min_R1 2 LLGGTRTPINDAS 13 1 Q8N357 Q8N357 SLC35F6 Solute carrier family 35 member F6 1 0 LLGGT(0.753)RT(0.247)PINDAS;LLGGT(0.534)RT(0.466)PINDAS ; 104.26 0.0010338 425670000 652360 661570 696690 211370 960080 682000 706840 724950 734960 921870 TRUE FALSE FALSE 606632.9328 609144.7838 966467.026 492080.042 839657.814 597861.7741 529981.1558 559894.7105 798666.9246 691027.7516 0.87787058 0.881505529 1.398593651 0.712098814 1.215085519 0.865177661 0.766946269 0.810234769 1.155766787 1 19.39838412 LLGGTRT(ph)PINDAS ddPTM_HeLa_A485_30min_R1 1 LLGGTRTPINDAS 13 1 Q8N357 Q8N357 SLC35F6 Solute carrier family 35 member F6 1 0 LLGGT(0.222)RT(0.778)PINDAS 95.195 0.0026872 457270000 412690 546570 406120 416310 484660 483390 731680 714660 418640 760470 TRUE FALSE FALSE 504491.4667 610486.607 556360.6881 439051.9611 436405.5487 508699.5529 575350.5907 539388.5145 502657.208 570898.8244 0.883679288 1.069342904 0.974534654 0.769053889 0.76441837 0.891050272 1.00779782 0.944805789 0.880466357 1 19.12287557 -9.338768291 15.16833063 0.999977746 0.91107211 0.081092108 0.091288231 0 0 0.098182822 0.023812832 4.58E-10 9.338768291 -0.088905636 LLGGTRT(ph)PINDAS ddPTM_HeLa_A486_30min_R1 1 LLGGTRTPINDAS 13 1 Q8N357 Q8N357 SLC35F6 Solute carrier family 35 member F6 1 0 LLGGT(0.105)RT(0.895)PINDAS 94.617 0.0027928 249960000 225130 211040 227640 77483 298320 226640 226760 239700 235220 297190 TRUE FALSE FALSE 209349.5496 194316.4218 315788.3044 180384.3398 260901.9239 198679.4611 170022.2496 185125.5426 255609.059 222771.6896 0.939749346 0.872267128 1.41754235 0.809727394 1.171162836 0.891852378 0.763213 0.831010183 1.147403691 1 17.76520638 -6.307472474 24.76340344 0.90591625 1.040604774 0.082896368 0.185548369 901.4616836 484936.7412 0.064368541 0.056767939 4.93E-07 6.307472474 0.134688524 LLGGVTIAQGGVLPNIQAVLLPK ddPTM_HeLa_A485_30min_R1 1 LLGGVTIAQGGVLPNIQAVLLPK 23 0 P16104;Q96QV6;Q8IUE6 P16104;Q96QV6 H2AFX;HIST1H2AA;HIST2H2AB Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B 0 0 64.679 0.0070776 4873700 977.2 1120.4 1001.3 703.58 1237.7 1056.9 1039.7 1079.9 1227.7 996.7 FALSE FALSE TRUE 1194.574769 1251.421034 1371.722538 742.0147938 1114.470242 1112.23765 817.5596014 815.0528318 1474.088129 748.2410329 1.596510638 1.672483837 1.833262916 0.991678832 1.489453523 1.486469735 1.09264203 1.089291814 1.970071226 1 9.547359274 -5.24302123 24.90417851 1.313194922 1.697925613 0.287546933 0.28671696 1046.443899 1414951.73 0.07571949 0.130827057 5.71E-06 5.24302123 0.384730691 LLGGVTIAQGGVLPNIQAVLLPK ddPTM_HeLa_A486_30min_R1 1 LLGGVTIAQGGVLPNIQAVLLPK 23 0 P16104;Q96QV6;Q8IUE6 P16104;Q96QV6 H2AFX;HIST1H2AA;HIST2H2AB Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B 0 0 108.25 9.20E-07 6503400 8167.8 8658.8 5233.1 3943.5 9239.7 8719.9 10060 8729 7845 10589 FALSE FALSE TRUE 7595.279399 7972.645153 7259.496467 9180.667293 8080.770669 7644.127395 7542.881596 6741.597253 8525.010916 7937.445477 0.956892166 1.004434635 0.914588514 1.156627446 1.018056841 0.963046287 0.950290823 0.849340921 1.074024501 1 12.95445906 -6.29853726 6.167536249 0.956506423 1.012645265 0.061304551 0.077977257 0.501553829 56.9314268 0.027567682 0.024638128 5.03E-07 6.29853726 0.056138842 LLGHS(ph)PVLR ddPTM_HeLa_A485_30min_R1 3 LLGHSPVLR 9 0 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0 P30305-2 CDC25B M-phase inducer phosphatase 2 1 0 LLGHS(1)PVLR;LLGHS(1)PVLR;LLGHS(1)PVLR ;; 166.86 6.49E-06 544450000 199209 246470 246045 225739 304118 256691 252956 287861 213250 262647 TRUE FALSE FALSE 243522.3548 275292.5225 337067.2843 238070.55 273838.9441 270130.9438 198909.8841 217262.6384 256047.319 197173.9366 1.235063615 1.396191238 1.709492087 1.207413891 1.388819176 1.370013444 1.008804143 1.10188315 1.298586027 1 17.58910934 -6.705494981 8.056789097 1.111166816 1.392902908 0.46622017 0.147667199 0.236085458 30.03116032 0.057530655 0.044298515 1.97E-07 6.705494981 0.281736092 LLGHS(ph)PVLR ddPTM_HeLa_A486_30min_R1 3 LLGHSPVLR 9 0 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0 P30305-2 CDC25B M-phase inducer phosphatase 2 1 0 LLGHS(1)PVLR;LLGHS(1)PVLR;LLGHS(1)PVLR ;; 152.7 4.14E-05 504951000 263412 301539 257303 90798 351361 270398 284783 307239 236358 301711 TRUE FALSE FALSE 244948.1791 277643.9515 356937.6124 211382.3327 307290.0271 237039.044 213527.2813 237287.3867 256845.7017 226160.6018 1.08307184 1.227640664 1.57824842 0.934655864 1.358724838 1.048100518 0.944140047 1.0491986 1.135678362 1 17.7869881 -6.361050853 7.592478264 1.031254517 1.237898827 0.275145454 0.16321187 0.387335454 26.15459158 0.056978589 0.050165682 4.35E-07 6.361050853 0.20664431 LLGLAGFFPLHPMMITNAER ddPTM_HeLa_A485_30min_R1 1 LLGLAGFFPLHPMMITNAER 20 0 Q9Y3D3 Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" 0 0 56.851 0.010542 0 2732.5 2563.8 1820.4 2500 3098.4 3020.1 3939.4 4567.8 2493.1 4743.1 FALSE FALSE TRUE 3340.335198 2863.614108 2493.841713 2636.56867 2789.912417 3178.227766 3097.715008 3447.539888 2993.442302 3560.73246 0.938103392 0.804220519 0.700373235 0.74045683 0.783522056 0.892576963 0.869965672 0.968210874 0.840681611 1 11.79795833 -6.356851343 2.912169374 0.914910816 0.785117316 0.419109806 0.071208888 0.283360624 4.661990506 0.028081088 0.024529225 4.40E-07 6.356851343 -0.129793499 LLGLAGFFPLHPMMITNAER ddPTM_HeLa_A486_30min_R1 1 LLGLAGFFPLHPMMITNAER 20 0 Q9Y3D3 Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" 0 0 126.19 1.93E-07 5454200 820.92 1474.7 2727.8 955.17 3398.8 1761.8 2692.6 2472 3280.6 2286.2 FALSE FALSE TRUE 763.3777472 1357.839401 3784.077213 2223.684032 2972.490811 1544.447029 2018.883001 1909.179563 3564.965049 1713.720639 0.445450518 0.792334159 2.208106226 1.297576735 1.73452472 0.901224501 1.178070074 1.114055301 2.080248652 1 10.74291623 -4.538500946 24.72897012 1.425577156 0.532171052 0.388580448 0.421267957 170.9157342 270548.632 0.105244078 0.278651742 2.89E-05 4.538500946 -0.893406104 LLGLNELDDLLGKES(ph)PSKDSEPSCWGK ddPTM_HeLa_A486_30min_R1 1 LLGLNELDDLLGKESPSKDSEPSCWGK 27 2 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 LLGLNELDDLLGKES(0.967)PS(0.033)KDSEPSCWGK 97.437 0.0009032 75401000 15081 13243 3412.6 13410 9190.2 21955 25716 19453 10208 41083 TRUE FALSE FALSE 14023.89978 12193.57645 4734.050113 31219.1577 8037.479421 19246.41532 19281.5848 15023.97656 11092.83766 30795.54939 0.455387225 0.395952554 0.153725139 1.013755504 0.260994838 0.624973923 0.626115955 0.487861943 0.360209117 1 14.91043425 -11.23925139 2.314724082 2.8216359 0.491185544 0.320090275 0.224403417 26299948.91 4327943.167 251010745.4 0.053881666 5.76E-12 11.23925139 -2.330450355 LLGLNELDDLLGKESPS(ph)KDSEPSCWGK ddPTM_HeLa_A485_30min_R1 1 LLGLNELDDLLGKESPSKDSEPSCWGK 27 2 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 LLGLNELDDLLGKES(0.413)PS(0.58)KDS(0.007)EPSCWGK 122.57 9.26E-06 57768000 53380 26464 13209 114820 40226 30460 71428 55286 25329 201350 TRUE FALSE FALSE 65254.19684 29558.73459 18095.55877 121092.3259 36220.9582 32054.8385 56166.82429 41727.02181 30412.29797 151157.1506 0.431697717 0.195549694 0.119713548 0.8011022 0.23962451 0.212062998 0.371579009 0.276050598 0.201196555 1 17.2056897 -10.58788855 3.885398947 1.017120345 0.316512148 0.55563651 0.183369941 89523484 124606797.4 11687686.49 0.044255171 2.58E-11 10.58788855 -0.700608196 LLGLTPPEGGAGDRS(ph)EEEASSTEKPTK ddPTM_HeLa_A485_30min_R1 3 LLGLTPPEGGAGDRSEEEASSTEKPTK 27 2 V9GYY5;Q9UGY1 V9GYY5 NOL12 Nucleolar protein 12 1 0 LLGLTPPEGGAGDRS(1)EEEASSTEKPTK;LLGLTPPEGGAGDRS(1)EEEASSTEKPTK;LLGLTPPEGGAGDRS(1)EEEASSTEKPTK ;; 252.47 3.50E-63 3859630000 890800 739140 527278 1179130 1063170 968000 1531450 1541400 769890 1608390 TRUE FALSE FALSE 1088955.387 825575.9933 722340.0741 1243542.886 957317.0618 1018682.983 1204243.197 1163369.233 924399.8612 1207447.973 0.901865265 0.683736286 0.598237017 1.029893555 0.792843322 0.84366615 0.997345826 0.963494295 0.765581525 1 20.2035296 -5.261953681 24.99999785 0.907325982 0.723525203 0.372048546 0.110093402 49.84076715 2422786.322 0.030437129 0.048469865 5.47E-06 5.261953681 -0.183800779 LLGLTPPEGGAGDRS(ph)EEEASSTEKPTK ddPTM_HeLa_A486_30min_R1 3 LLGLTPPEGGAGDRSEEEASSTEKPTK 27 2 V9GYY5;Q9UGY1 V9GYY5 NOL12 Nucleolar protein 12 1 0 LLGLTPPEGGAGDRS(1)EEEASSTEKPTK;LLGLTPPEGGAGDRS(0.933)EEEAS(0.022)S(0.022)T(0.022)EKPTK;LLGLTPPEGGAGDRS(1)EEEASSTEKPTK ;; 247.99 1.45E-50 2495160000 1190640 1119650 566481 545180 1170750 1316140 1643270 1423070 998540 1633860 TRUE FALSE FALSE 1107182.284 1030924.856 785837.6141 1269206.592 1023903.618 1153768.028 1232106.465 1099068.026 1085094.251 1224730.821 0.90402092 0.841756277 0.641641086 1.036314731 0.836023394 0.942058457 1.006022257 0.897395581 0.88598591 1 20.22403327 -5.277678525 24.99488734 0.937204189 0.800401088 0.391375247 0.084037717 855.0910489 1316132.811 0.023513601 0.03498947 5.28E-06 5.277678525 -0.136803101 LLGMS(ph)FMNR ddPTM_HeLa_A485_30min_R1 1 LLGMSFMNR 9 0 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 Q9UIQ6-3 LNPEP "Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form" 1 0 LLGMS(1)FMNR 117.52 0.00058134 22559000 24128 19547 17091 19877 23139 17026 32117 34343 17448 34490 TRUE FALSE FALSE 29495.19036 21832.85161 23413.67212 20962.83018 20835.19991 17917.45503 25254.94058 25920.3254 20949.65356 25892.27774 1.139150084 0.843218655 0.904272399 0.809617075 0.804687796 0.691999955 0.975385048 1.001083244 0.809108174 1 14.66023426 -9.808332034 17.03084511 0.999999992 0.881347983 0.07322177 0.119880846 0 0 0.117681848 0.028542041 1.55E-10 9.808332034 -0.11865201 LLGMS(ph)FMNR ddPTM_HeLa_A486_30min_R1 1 LLGMSFMNR 9 0 Q9UIQ6-3;Q9UIQ6-2;Q9UIQ6 Q9UIQ6-3 LNPEP "Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form" 1 0 LLGMS(1)FMNR 60.518 0.030699 20810000 23172 21907 17477 10727 31849 20086 25219 24651 17455 27113 TRUE FALSE FALSE 21547.76246 20171.00954 24244.56245 24972.99811 27854.20144 17607.99354 18908.93946 19038.50543 18968.01345 20323.72832 1.06022685 0.99248569 1.192919038 1.228760674 1.370526165 0.866376152 0.930387336 0.936762445 0.933293988 1 14.31087746 -6.286281034 24.96329158 0.929225582 1.163828954 0.588458428 0.098443805 610.8920805 613881.1897 0.0381288 0.033639694 5.17E-07 6.286281034 0.234603372 LLGNS(ph)LLK ddPTM_HeLa_A485_30min_R1 1 LLGNSLLK 8 0 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 LLGNS(1)LLK 96.113 0.0029082 45126000 103830 101930 71789 131990 106250 105300 153270 143540 82595 203450 TRUE FALSE FALSE 126926.6253 113849.8268 98346.73849 139200.2795 95671.37693 110813.3452 120522.6124 108336.5899 99171.05889 152733.6592 0.831032439 0.745414124 0.643910052 0.91139229 0.626393536 0.72553323 0.789103155 0.709317059 0.649307163 1 17.22065851 -10.58137231 5.965534301 1.000837984 0.736625665 0.465666578 0.08457409 0.000906107 6.36E-05 0.078718809 0.019034091 2.62E-11 10.58137231 -0.264212319 LLGNS(ph)LLK ddPTM_HeLa_A486_30min_R1 2 LLGNSLLK 8 0 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 LLGNS(1)LLK;LLGNS(1)LLK ; 96.229 0.0028882 77765000 274380 283220 173865 138888 297270 299060 371150 354570 252740 399130 TRUE FALSE FALSE 255147.3789 260776.6157 241190.1843 323338.283 259983.6247 262165.0178 278284.3444 273842.1512 274647.7067 299185.2501 0.852807345 0.871622567 0.806156668 1.080729357 0.868972065 0.876263177 0.930140588 0.915292954 0.917985451 1 18.19067953 -1.000003431 0.018074386 1.637889383 1.05E-05 0.206945678 0.066674202 6663.252922 9.309397029 322.0578423 549.5624992 0.09999921 1.000003431 -1.637878927 LLGPAPEDDGGHNDHSQPQASQDQDSHTLS(ph)PQV ddPTM_HeLa_A485_30min_R1 2 LLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 33 0 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 0 LLGPAPEDDGGHNDHSQPQAS(0.006)QDQDS(0.113)HT(0.103)LS(0.778)PQV;LLGPAPEDDGGHNDHSQPQASQDQDSHTLS(1)PQV ; 192.15 1.66E-21 500750000 91322 126071 150452 109394 162553 110786 141708 135216 129792 162212 TRUE FALSE FALSE 111636.2638 140813.9068 206110.4556 115369.9172 146368.6526 116586.5837 111430.9282 102054.064 155840.0639 121775.5337 0.916738038 1.156339886 1.692544055 0.947398165 1.201954515 0.957389224 0.915051856 0.83805064 1.279732136 1 16.89386478 -5.879568087 1.793662335 0.989121606 1.228360857 0.130364638 0.225766893 0.644807129 4.262271089 0.083592497 0.10084533 1.32E-06 5.879568087 0.239239251 LLGPAPEDDGGHNDHSQPQASQDQDSHTLS(ph)PQV ddPTM_HeLa_A486_30min_R1 2 LLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 33 0 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 0 LLGPAPEDDGGHNDHSQPQASQDQDS(0.001)HTLS(0.999)PQV;LLGPAPEDDGGHNDHSQPQASQDQDSHT(0.002)LS(0.998)PQV ; 223.92 2.53E-39 347390000 65011 78450 88222 26563.9 106894 82520 86164 90642 96360 74268 TRUE FALSE FALSE 60454.06462 72233.33629 122383.9211 61842.10167 93486.35777 72339.5214 64604.85585 70004.7953 104712.5624 55670.8094 1.085920346 1.297508283 2.19834995 1.110853288 1.679270677 1.299415658 1.160479909 1.257477591 1.880924016 1 15.76463344 LLGPNAS(ph)PDGLIPWTR ddPTM_HeLa_A485_30min_R1 1 LLGPNASPDGLIPWTR 16 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224;A0A669KB75;A0A669KB52;J3KPM9;A0A669KBI6;P42224-2 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription 1 0 LLGPNAS(1)PDGLIPWTR 124.25 2.44E-05 21512000 16401 30963 31379 16630 31651 28523 26656 31448 21271 21180 TRUE FALSE FALSE 20049.34587 34583.85351 42987.39789 17538.45479 28499.71531 30016.42018 20960.72784 23735.32869 25539.89459 15900.21579 1.260948036 2.175055607 2.703573238 1.103032501 1.792410599 1.887799548 1.318266879 1.492767709 1.606260879 1 13.95675872 -7.711815363 0.312554308 0.941176362 1.991709213 0.234041557 0.434934457 2.319882187 0.770567882 0.913367265 0.674540914 1.94E-08 7.711815363 1.050532851 LLGPSAAADILQLSSS(ph)LPLQSR ddPTM_HeLa_A485_30min_R1 2 LLGPSAAADILQLSSSLPLQSR 22 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 LLGPSAAADILQLSS(0.022)S(0.976)LPLQS(0.001)R;LLGPSAAADILQLSS(0.037)S(0.963)LPLQSR ; 307.82 2.79E-89 155999000 110960 157336 162217 106679 175109 137285 176208 200357 150281 179179 TRUE FALSE FALSE 135642.6692 175735.0766 222227.8187 112506.6036 157674.5331 144473.0303 138559.7213 151219.1316 180441.0182 134512.9728 1.008398419 1.306454484 1.652092092 0.836399652 1.172188301 1.07404533 1.030084447 1.12419738 1.341439524 1 17.03738579 -5.273739645 24.99941556 1.088982491 1.320728976 0.253271012 0.188377723 1071.48248 2177709.54 0.053167948 0.079532916 5.32E-06 5.273739645 0.231746485 LLGPSAAADILQLSSS(ph)LPLQSR ddPTM_HeLa_A486_30min_R1 2 LLGPSAAADILQLSSSLPLQSR 22 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 LLGPSAAADILQLSS(0.003)S(0.997)LPLQSR;LLGPSAAADILQLSS(0.005)S(0.995)LPLQSR ; 289.76 3.49E-87 99688000 91453 104948 93060 32469 118859 85731 102978 101876 91998 105807 TRUE FALSE FALSE 85042.61696 96631.53827 129095.3242 75589.47289 103950.5959 75154.38087 77211.81521 78681.05874 99972.46071 79312.23851 1.072250873 1.218368566 1.627684789 0.953061902 1.310650132 0.94757609 0.973517034 0.992041836 1.260492234 1 16.27525588 -5.86713983 1.598820066 1.039700963 1.270662224 0.190983838 0.187205619 0.595794254 3.148535895 0.070421615 0.087060266 1.36E-06 5.86713983 0.230961261 LLGQFSEK(ac)ELAAEK ddPTM_HeLa_A485_30min_R1 2 LLGQFSEKELAAEK 14 1 P53004 P53004 BLVRA Biliverdin reductase A 0 1 ; LLGQFSEK(1)ELAAEK;LLGQFSEK(1)ELAAEK 282.89 9.67E-52 102085000 76563 81171 70900 92684 99428 97872 124519 137789 81323 139184 FALSE TRUE FALSE 93594.17521 90663.24236 97128.8604 97747.09223 89528.59921 102996.4266 97914.49842 103996.0317 97643.78016 104487.9903 0.895740984 0.867690556 0.92956961 0.935486384 0.856831478 0.985725022 0.937088541 0.995291721 0.934497638 1 16.6729776 -6.274650728 24.99581365 0.968136817 0.899372421 0.593535319 0.030332057 591.7375791 1119561.546 0.010409496 0.009234456 5.31E-07 6.274650728 -0.068764396 LLGQFSEK(ac)ELAAEK ddPTM_HeLa_A486_30min_R1 2 LLGQFSEKELAAEK 14 1 P53004 P53004 BLVRA Biliverdin reductase A 0 1 ; LLGQFSEK(1)ELAAEK;LLGQFSEK(1)ELAAEK 331.92 1.22E-96 110755000 119192 129602 80742 43521 133446 133715 151374 147177 109337 161681 FALSE TRUE FALSE 110837.2563 119331.8655 112007.4647 101319.0874 116707.9583 117218.6028 113498.6241 113668.01 118814.4192 121195.0252 0.914536352 0.984626764 0.924191934 0.836000382 0.962976476 0.967189887 0.936495734 0.937893364 0.98035723 1 16.88697096 LLGQFTLIGIPPAPR ddPTM_HeLa_A485_30min_R1 2 LLGQFTLIGIPPAPR 15 0 P38646;H0Y8S0 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 166.7 1.07E-07 27505000 22449.1 25014.8 29293.2 23396 28862.2 23459.9 29476 24571.8 24169.1 40571 FALSE FALSE TRUE 27442.82485 27940.06326 40129.97367 24674.06424 25988.57803 24688.22409 23178.2118 18545.52752 29019.61668 30457.39635 0.901023335 0.917349038 1.317577287 0.810117318 0.853276417 0.810582224 0.761004373 0.60890062 0.952793743 1 14.894505 -5.431289966 24.99999995 0.809227536 1.03774273 0.311726897 0.145910303 69.33840604 18923.47587 0.04063471 0.060271002 3.70E-06 5.431289966 0.228515194 LLGQFTLIGIPPAPR ddPTM_HeLa_A486_30min_R1 2 LLGQFTLIGIPPAPR 15 0 P38646;H0Y8S0 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 191.79 1.51E-11 32771000 49571 82015 73465 28757 88596 74689 77960 75158 79500 67589 FALSE FALSE TRUE 46096.32888 75515.83271 101912.6155 66947.7493 77483.46356 65474.63056 58453.58342 58046.16409 86391.12401 50664.27447 0.909838922 1.49051444 2.011528173 1.321399546 1.529351093 1.292323462 1.15374362 1.145702069 1.705168482 1 15.62868118 -6.340716449 5.437371909 1.258894521 1.478144964 0.089166922 0.304199093 0.565855499 29.02174814 0.110283177 0.097158027 4.56E-07 6.340716449 0.219250443 LLGRNS(ph)NSK ddPTM_HeLa_A485_30min_R1 2 LLGRNSNSK 9 1 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 1 0 LLGRNS(0.966)NS(0.034)K;LLGRNS(0.992)NS(0.008)K ; 83.182 0.0029448 612990000 237370 317060 241500 261920 428810 400750 501210 613650 297220 393950 TRUE FALSE FALSE 290172.1376 354137.4089 330840.8997 276228.0264 386116.1708 421732.6503 394122.389 463151.3753 356869.3277 295745.5151 0.98115482 1.19743966 1.118667512 0.9340058 1.305568981 1.425998464 1.33264029 1.566046995 1.206677057 1 18.17399677 -5.877225001 6.871713414 1.345391257 1.073093666 0.367399067 0.154769193 0.209748686 11.81043461 0.045915935 0.052248191 1.33E-06 5.877225001 -0.272297591 LLGRNS(ph)NSK ddPTM_HeLa_A486_30min_R1 1 LLGRNSNSK 9 1 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 1 0 LLGRNS(0.984)NS(0.016)K 103.65 0.00057459 0 255690 239230 175210 139340 334240 271100 376350 364090 191540 360550 TRUE FALSE FALSE 237767.4514 220272.5435 243056.0043 324390.5619 292316.5025 237654.4383 282183.2494 281194.655 208142.8414 270265.9332 0.879753688 0.81502149 0.899321647 1.20026434 1.081588416 0.879335533 1.044094777 1.04043692 0.770140872 1 18.04402015 -5.01392158 24.3699113 1.007408627 0.849833528 0.256252297 0.109541497 602.0882511 1053970.79 0.029960318 0.054866923 9.68E-06 5.01392158 -0.157575099 LLGS(ph)LDEVVLLSPVPELR ddPTM_HeLa_A485_30min_R1 2 LLGSLDEVVLLSPVPELR 18 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 LLGS(1)LDEVVLLSPVPELR;LLGS(1)LDEVVLLSPVPELR ; 243.09 2.62E-45 236220000 32909 32581 24256 17319.4 40977 28448 28997 33468 27796 35086 TRUE FALSE FALSE 40229.49352 36391.06453 33229.30378 18265.51497 36897.186 29937.49329 22801.55407 25259.92052 33374.40224 26339.70591 1.527332676 1.381604816 1.261567 0.693459336 1.400819968 1.136591783 0.86567231 0.959005412 1.267075736 1 14.68495162 -4.898019236 3.325121265 1.051329645 1.461447702 0.421613449 0.191419487 0.228246596 4.941287966 0.051665772 0.12355637 1.26E-05 4.898019236 0.410118057 LLGWIQNK ddPTM_HeLa_A485_30min_R1 3 LLGWIQNK 8 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-4;O75369-5;Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;Q14315-2;Q14315 O75369-8;Q60FE5;Q14315-2 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C 0 0 ;; ;; 172.52 0.00034563 101020000 97497 107698 101381 103310 134944 106604 136282 132709 105924 145230 FALSE FALSE TRUE 119184.8713 120292.3443 138886.0507 108953.5637 121508.5015 112185.6206 107164.2374 100161.9097 127181.9752 109026.8338 1.093170068 1.10332787 1.273870348 0.999327963 1.11448253 1.028972563 0.982916166 0.918690438 1.166519937 1 16.73432373 -5.295975206 24.99681865 1.028241259 1.151443355 0.347871433 0.079339548 675.5199402 488935.8605 0.022298029 0.033074621 5.06E-06 5.295975206 0.123202096 LLGWIQNK ddPTM_HeLa_A486_30min_R1 1 LLGWIQNK 8 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-4;O75369-5;Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;Q14315-2;Q14315 O75369-8;Q60FE5;Q14315-2 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C 0 0 189.97 8.02E-07 39098000 91942 90604 66966 33815 97767 83059 96094 98472 73603 94556 FALSE FALSE TRUE 85497.34059 83424.20907 92897.02861 78723.02892 85504.15122 72812.02506 72050.26482 76052.07523 79982.9673 70878.56214 1.206251058 1.177001995 1.31065058 1.110674745 1.206347147 1.027278529 1.016531129 1.072991225 1.12845076 1 16.11306172 -6.25683563 24.87380301 1.051579828 1.201728001 0.649242595 0.0562628 240.3090128 1298377.677 0.018949755 0.018354216 5.54E-07 6.25683563 0.150148173 LLGWIQNKLPQLPITNFSR ddPTM_HeLa_A485_30min_R1 2 LLGWIQNKLPQLPITNFSR 19 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 144.66 6.76E-10 12636100 3322.6 12666.9 6442 1036.64 6238.2 12224.7 16378.2 32766 2896.4 3284.7 FALSE FALSE TRUE 4061.700907 14148.18377 8825.163874 1093.269018 5617.102904 12864.76639 12878.86377 24730.08712 3477.680913 2465.88474 1.647157647 5.737568969 3.57890364 0.443357713 2.277925976 5.217099639 5.222816607 10.02889013 1.410317707 1 11.26788965 -6.269749353 22.8944964 5.180567889 2.82303181 0.084245 2.67600117 387.0946845 1066463.861 0.92148137 0.828036524 5.37E-07 6.269749353 -2.357536079 LLHEDLDES(ph)DDDMDEK ddPTM_HeLa_A485_30min_R1 1 LLHEDLDESDDDMDEK 16 0 O43150;O43150-2 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 LLHEDLDES(1)DDDMDEK 279.29 1.21E-58 84849000 75621 69404 50634 139400 74295 88059 124940 103130 49967 178430 TRUE FALSE FALSE 92442.63056 77520.19407 69365.62366 147015.069 66897.92893 92669.63307 98245.54833 77837.2058 59994.91858 133950.6848 0.69012436 0.578721895 0.517844487 1.097531299 0.499422075 0.691819032 0.73344566 0.581088525 0.447888107 1 17.03134243 LLHEDLDES(ph)DDDMDEK ddPTM_HeLa_A486_30min_R1 2 LLHEDLDESDDDMDEK 16 0 O43150;O43150-2 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK ; 229.6 2.16E-34 859120000 578070 486080 277010 258353 493040 495820 601250 531140 433430 680760 TRUE FALSE FALSE 537550.2782 447561.2505 384275.6906 601458.8404 431198.3258 434650.7695 450810.8906 410211.0167 471000.0614 510293.265 1.053414409 0.87706674 0.753048721 1.178653299 0.845001013 0.85176662 0.883434922 0.803873076 0.922998781 1 18.96096708 LLHGAGGHLES(ph)PAR ddPTM_HeLa_A486_30min_R1 1 LLHGAGGHLESPAR 14 0 H7C3A6;H7C2E6;H7C361;Q6NZ36-5;Q6NZ36;Q6NZ36-4;Q6NZ36-3;Q6NZ36-2 H7C3A6 C1orf86;FAAP20 Fanconi anemia-associated protein of 20 kDa 1 0 LLHGAGGHLES(1)PAR 117.3 0.00010269 164220000 131830 143840 140150 79358 215630 140590 183580 186410 131200 237940 TRUE FALSE FALSE 122589.3978 132441.5945 194419.8333 184749.4345 188583.6747 123245.4352 137646.3423 143968.5123 142572.5216 178358.2753 0.687321054 0.742559292 1.090052217 1.035833265 1.05733067 0.690999254 0.771740712 0.807187175 0.799360284 1 17.44441863 -6.267134654 24.9796236 0.799174392 0.928207458 0.124221914 0.141347443 968.5368838 4248015.2 0.052952806 0.04795737 5.41E-07 6.267134654 0.129033066 LLHMDS(ph)DDEIPIR ddPTM_HeLa_A485_30min_R1 7 LLHMDSDDEIPIR 13 0 Q1MSJ5-2;Q1MSJ5-1;Q1MSJ5 Q1MSJ5-2 CSPP1 Centrosome and spindle pole-associated protein 1 1 0 LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR ;;;;;; 209.56 5.47E-22 479679000 299971 416667 401967 305787 453849 382093 445882 480107 340024 414682 TRUE FALSE FALSE 366698.5141 465392.5811 550671.3205 322491.3695 408662.2 402098.7987 350615.6682 362360.0055 408263.6979 311309.4091 1.177923003 1.494951863 1.768887494 1.035919121 1.312720362 1.291637152 1.12626107 1.16398668 1.311440278 1 18.24798966 -5.278277321 24.99991581 1.192520807 1.482023935 0.405909628 0.167374436 812.7160652 1206668.07 0.047000817 0.069927603 5.27E-06 5.278277321 0.289503128 LLHMDS(ph)DDEIPIR ddPTM_HeLa_A486_30min_R1 6 LLHMDSDDEIPIR 13 0 Q1MSJ5-2;Q1MSJ5-1;Q1MSJ5 Q1MSJ5-2 CSPP1 Centrosome and spindle pole-associated protein 1 1 0 LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR ;;;;; 230.16 2.54E-31 293161300 402287 448892 404553 135575.4 530926 399675 446335 462204 368984 405452 TRUE FALSE FALSE 374088.7587 413320.1631 561206.7559 315626.3828 464332.3104 350367.1621 334657.2621 356970.239 400967.8302 303924.1802 1.230862113 1.35994498 1.846535395 1.038503691 1.527789958 1.152811079 1.101120885 1.174537146 1.319302169 1 18.21335193 -6.281427299 23.2193449 1.157435668 1.403105127 0.267429645 0.207632693 475.419841 552277.4394 0.071937994 0.063552525 5.23E-07 6.281427299 0.245669459 LLHPS(ph)PDLVSQEATLSEAR ddPTM_HeLa_A485_30min_R1 1 LLHPSPDLVSQEATLSEAR 19 0 A0A087WU05;A0A087WY48;Q8IY22-3;Q8IY22-2;Q8IY22 A0A087WU05 CMIP C-Maf-inducing protein 1 0 LLHPS(1)PDLVSQEATLSEAR 156.23 4.17E-09 113690000 93598 113710 119510 86761 127780 105860 117140 120950 105490 102840 TRUE FALSE FALSE 114418.5522 127007.3954 163721.7222 91500.53374 115057.7745 111402.6659 92112.08205 91286.82286 126660.8754 77203.88063 1.482031101 1.645090821 2.120641098 1.185180499 1.490310767 1.44296718 1.193101711 1.182412362 1.640602446 1 16.23638575 -5.284949956 24.9427778 1.321354861 1.738838083 0.440700907 0.228764735 709.0423956 752233.7257 0.063550589 0.094323143 5.19E-06 5.284949956 0.417483223 LLHQFS(ph)FSPER ddPTM_HeLa_A486_30min_R1 1 LLHQFSFSPER 11 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 LLHQFS(0.824)FS(0.176)PER 112.15 0.00035147 20613000 30502 37889 34053 9624.7 39666 33551 32428 35322 29970 30986 TRUE FALSE FALSE 28363.96731 34886.53765 47239.23357 22406.78801 34690.72041 29411.81874 24314.17141 27279.95167 32567.82373 23226.90391 1.221168668 1.501988288 2.033815344 0.964691122 1.493557666 1.266282362 1.046810694 1.174497978 1.402159489 1 14.50350924 -5.284243564 24.99073918 1.209381126 1.577290682 0.351959114 0.243603267 897.4823271 983534.3942 0.068578142 0.101795981 5.20E-06 5.284243564 0.367909555 LLHQFSFS(ph)PER ddPTM_HeLa_A485_30min_R1 5 LLHQFSFSPER 11 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 LLHQFS(0.014)FS(0.986)PER;LLHQFSFS(1)PER;LLHQFS(0.047)FS(0.953)PER;LLHQFS(0.001)FS(0.999)PER;LLHQFS(0.001)FS(0.999)PER ;;;; 218.45 6.28E-18 1034745000 585262 901225 918760 594130 1039466 787622 894536 968966 806016 824421 TRUE FALSE FALSE 715451.5128 1006615.424 1258647.557 626585.8175 935973.1153 828860.67 703411.0759 731325.5692 967776.018 618908.017 1.155990055 1.626437849 2.033658512 1.012405398 1.51229761 1.339230786 1.136535732 1.181638546 1.563683118 1 19.23936548 -5.280714612 24.99652143 1.266961529 1.607469814 0.273898101 0.264508085 1084.491305 1406388.603 0.074035283 0.110004183 5.24E-06 5.280714612 0.340508285 LLHQFSFS(ph)PER ddPTM_HeLa_A486_30min_R1 4 LLHQFSFSPER 11 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 LLHQFS(0.001)FS(0.999)PER;LLHQFS(0.005)FS(0.995)PER;LLHQFS(0.001)FS(0.999)PER;LLHQFSFS(1)PER ;;; 228.93 2.03E-18 982530000 848890 998860 967860 246555 1099220 827860 948200 1013210 803800 819790 TRUE FALSE FALSE 789387.1947 919706.6958 1342641.312 573992.5002 961345.5778 725727.0503 710950.331 782524.2012 873474.0312 614509.2481 1.284581472 1.496652327 2.184900091 0.934066496 1.564411896 1.180986377 1.156940002 1.273413222 1.421417227 1 19.2290752 -5.285467029 24.99982973 1.240394076 1.639505642 0.347307848 0.272910352 901.7299745 938212.796 0.075669318 0.112299502 5.18E-06 5.285467029 0.399111566 LLHS(ph)PMTK ddPTM_HeLa_A485_30min_R1 3 LLHSPMTK 8 0 A0A6I8PS19;A0A6I8PL80;Q9NVN8 A0A6I8PS19 GNL3L Guanine nucleotide-binding protein-like 3-like protein 1 0 LLHS(1)PMTK;LLHS(1)PMTK;LLHS(1)PMTK ;; 176.48 8.94E-06 1279420000 760940 809110 633320 806660 1022400 849500 1084560 1128200 705070 982170 TRUE FALSE FALSE 930208.4778 903728.3762 867611.4226 850725.7932 920606.2661 893978.5064 852834.896 851507.1811 846571.0817 737333.0945 1.261585143 1.225671793 1.176688567 1.153787616 1.248562248 1.212448638 1.156648064 1.154847365 1.148152834 1 19.49195699 -14 0.1437495 0.299328336 1.260450235 0.816765597 0.030088142 60.55480389 0.526605742 12.02207071 0.187569207 1.00E-14 14 0.961121899 LLHS(ph)PMTK ddPTM_HeLa_A486_30min_R1 4 LLHSPMTK 8 0 A0A6I8PS19;A0A6I8PL80;Q9NVN8 A0A6I8PS19 GNL3L Guanine nucleotide-binding protein-like 3-like protein 1 0 LLHS(1)PMTK;LLHS(1)PMTK;LLHS(1)PMTK;LLHS(1)PMTK ;;; 182.28 5.33E-06 1039940000 1502500 1393800 919200 540996 1413690 1357540 1590290 1558080 1148710 1621410 TRUE FALSE FALSE 1397182.509 1283350.212 1275138.857 1259466.028 1236371.818 1190060.517 1192382.622 1203339.197 1248281.108 1215398.382 1.149567524 1.0559091 1.049152998 1.036257779 1.017256429 0.979152626 0.981063196 0.990077998 1.0270551 1 20.21299785 -1 0.508374723 0.994438445 6.124352809 0.880360325 0.016587467 36.75977834 0.38243197 0.009571238 202.1749875 0.1 1 5.129914364 LLHYLGHVMVNGPTTPIPVK ddPTM_HeLa_A486_30min_R1 1 LLHYLGHVMVNGPTTPIPVK 20 0 A0A494C016;P11498 A0A494C016 PC "Pyruvate carboxylase, mitochondrial" 0 0 46.663 0.033776 13030000 26585 22973 18356 7284.2 34437 21076 26578 25220 19690 24844 FALSE FALSE TRUE 24721.52879 21152.53581 25463.93479 16957.98572 30117.59035 18475.85741 19927.90329 19477.95655 21396.74505 18622.90069 1.327480031 1.135834646 1.367345249 0.910598515 1.617234116 0.992104168 1.070075152 1.045914214 1.148948029 1 14.18479018 LLIDPNCSGHS(ph)PR ddPTM_HeLa_A485_30min_R1 4 LLIDPNCSGHSPR 13 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2;C9JSD5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 LLIDPNCSGHS(1)PR;LLIDPNCSGHS(1)PR;LLIDPNCS(0.007)GHS(0.993)PR;LLIDPNCS(0.015)GHS(0.985)PR ;;; 161.99 6.56E-12 2370000000 1760890 2619340 2834010 1524620 3191820 2284080 2487250 2658410 2328740 2274980 TRUE FALSE FALSE 2152593.906 2925649.028 3882428.232 1607906.13 2874031.194 2403670.897 1955828.719 2006430.779 2796096.758 1707869.354 1.26039729 1.713040298 2.273258328 0.941469045 1.682816772 1.407409116 1.145186377 1.174815143 1.637184221 1 20.70376619 -5.274934987 24.99998734 1.307369581 1.745312858 0.300533496 0.323556926 997.9768568 1848703.284 0.090460679 0.135010762 5.31E-06 5.274934987 0.437943277 LLIDPNCSGHS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LLIDPNCSGHSPR 13 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2;C9JSD5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 LLIDPNCSGHS(1)PR;LLIDPNCSGHS(1)PR;LLIDPNCSGHS(1)PR;LLIDPNCSGHS(1)PR ;;; 178.22 8.60E-14 2367000000 2690560 3145850 2989640 349476 3567190 2447260 2828620 2927400 2571360 2128750 TRUE FALSE FALSE 2501965.638 2896561.389 4147308.673 813597.7895 3119759.767 2145341.943 2120869.358 2260894.925 2794247.555 1595697.144 1.567945175 1.815232546 2.599057527 0.509869804 1.955107696 1.344454335 1.329117725 1.416869694 1.751113966 1 20.60575543 -5.246737001 24.99954743 1.37354783 1.976193713 0.318718209 0.441755404 1044.936427 1776780.585 0.115345271 0.198707893 5.67E-06 5.246737001 0.602645883 LLIHQSLAGGIIGVK ddPTM_HeLa_A485_30min_R1 1 LLIHQSLAGGIIGVK 15 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 148.57 1.22E-05 0 48530 92892 105790 17679 119590 83837 79284 104160 76221 46835 FALSE FALSE TRUE 59325.33107 103754.9113 144926.1233 18644.759 107683.1997 88226.57568 62344.32571 78614.59668 91517.85556 35159.89643 1.687301076 2.950944737 4.121915534 0.53028481 3.062671129 2.509295664 1.773165795 2.235916617 2.602904583 1 15.1016432 -10.48497532 0.288713204 1.96E-10 2.558416718 0.169807124 0.907115532 39.68116063 2.230361421 31.61470922 1.065672788 3.27E-11 10.48497532 2.558416718 LLIHQSLAGGIIGVK ddPTM_HeLa_A486_30min_R1 1 LLIHQSLAGGIIGVK 15 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 156.17 6.73E-06 0 62037 83853 85899 14259 109220 64900 54629 61692 77823 44120 FALSE FALSE TRUE 57688.52666 77208.18289 119161.3933 33195.67261 95520.60916 56893.29785 40960.24639 47646.07833 84568.7603 33072.06483 1.744327938 2.33454377 3.603082961 1.003737528 2.888256589 1.720282606 1.23851494 1.440674436 2.557105543 1 15.0133255 -6.491380842 19.79540273 1.579168558 2.313589582 0.195596764 0.738936271 90.0718111 56607.02394 0.25484797 0.224156805 3.23E-07 6.491380842 0.734421024 LLIHQSLAGGIIGVK(ac)GAK ddPTM_HeLa_A485_30min_R1 2 LLIHQSLAGGIIGVKGAK 18 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 1 ; LLIHQSLAGGIIGVK(1)GAK;LLIHQSLAGGIIGVK(1)GAK 184.01 5.86E-18 116136000 122276 207420 223956 46397 274529 186591 193211 249760 164605 127018 FALSE TRUE FALSE 149475.8744 231675.9647 306806.644 48931.55063 247195.9288 196360.6162 151929.8915 188505.9684 197639.7137 95354.75019 1.567576592 2.429621641 3.217528685 0.513152733 2.592381904 2.059264125 1.593312249 1.976891219 2.072678217 1 16.54101719 -10.91507337 0.27580786 4.69E-12 2.126880028 0.163044263 0.67814769 55.8388546 2.419046197 38.00725611 0.8538549 1.22E-11 10.91507337 2.126880028 LLIHQSLAGGIIGVK(ac)GAK ddPTM_HeLa_A486_30min_R1 2 LLIHQSLAGGIIGVKGAK 18 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 1 ; LLIHQSLAGGIIGVK(1)GAK;LLIHQSLAGGIIGVK(1)GAK 208.13 4.94E-23 127493000 201833 287292 273385 49523 339340 209660 181567 188478 239988 126578 FALSE TRUE FALSE 187685.549 264525.9356 379246.9935 115292.0468 296776.813 183794.2809 136137.0162 145565.6738 260790.3531 94882.04492 1.978093423 2.787945136 3.997036466 1.215109211 3.127850093 1.937081784 1.434802721 1.534175133 2.74857433 1 16.53384748 -6.440601079 6.35637383 1.718179546 2.625763395 0.244538953 0.791298458 0.364300405 23.06898789 0.277399076 0.242707038 3.63E-07 6.440601079 0.907583849 LLIPERDPLEEIAES(ph)SPQTAANSAAELLK ddPTM_HeLa_A485_30min_R1 2 LLIPERDPLEEIAESSPQTAANSAAELLK 29 1 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 LLIPERDPLEEIAES(0.545)S(0.439)PQT(0.015)AANSAAELLK;LLIPERDPLEEIAES(0.436)S(0.436)PQT(0.123)AANS(0.006)AAELLK ; 96.963 0.00048749 174209000 23739.7 25844.1 23432 30288.9 38844.9 29552.6 39228.4 47084.4 22583.5 37527.7 TRUE FALSE FALSE 29020.51436 28866.34268 32100.47189 31943.50591 34977.36536 31099.92844 30846.93187 35536.87707 27115.8013 28172.73504 1.030092191 1.024619819 1.139416242 1.133844686 1.241532472 1.103901641 1.094921449 1.261392514 0.962483808 1 14.78201201 -7.798316489 24.99992789 0.98124142 1.127580063 0.393994992 0.073147796 208.804341 141548.8123 0.073043526 0.018862004 1.59E-08 7.798316489 0.146338643 LLIPERDPLEEIAES(ph)SPQTAANSAAELLK ddPTM_HeLa_A486_30min_R1 3 LLIPERDPLEEIAESSPQTAANSAAELLK 29 1 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 LLIPERDPLEEIAES(0.565)S(0.434)PQT(0.001)AANSAAELLK;LLIPERDPLEEIAES(0.499)S(0.499)PQT(0.002)AANSAAELLK;LLIPERDPLEEIAES(0.497)S(0.497)PQT(0.005)AANSAAELLK ;; 140.3 1.91E-07 247519000 31811 39793 27390.8 16983.5 43037 43361 53254 53893 31565 43650 TRUE FALSE FALSE 29581.21317 36639.65776 37997.25131 39538.4463 37638.89816 38011.56068 39929.28594 41622.74038 34301.07961 32719.75589 0.904078052 1.119802296 1.161293851 1.208396739 1.150341656 1.161731182 1.220341804 1.272098133 1.048329325 1 14.99787436 -4.238911443 2.527614624 1.167017236 0.838238065 0.479590499 0.076115522 0.429955556 3.321081866 0.018683171 0.31059439 5.77E-05 4.238911443 -0.328779171 LLIPERDPLEEIAESS(ph)PQTAANSAAELLK ddPTM_HeLa_A485_30min_R1 1 LLIPERDPLEEIAESSPQTAANSAAELLK 29 1 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 LLIPERDPLEEIAES(0.17)S(0.829)PQT(0.002)AANSAAELLK 110.75 9.97E-05 69409000 23183 23645 17981 26965 34487 29491 32888 41478 28214 38184 TRUE FALSE FALSE 28339.97837 26410.07707 24632.92015 28438.02967 31053.35319 31035.10316 25861.21013 31305.45547 33876.29101 28665.43152 0.988646494 0.921321454 0.859324937 0.992067035 1.083303182 1.082666526 0.902174108 1.092097827 1.181782 1 14.80702438 -5.519621498 5.399767949 1.054284653 0.92264244 0.40164418 0.073372762 0.179914414 17.31011678 0.022353499 0.030971181 3.02E-06 5.519621498 -0.131642213 LLIPERDPLEEIAESS(ph)PQTAANSAAELLK ddPTM_HeLa_A486_30min_R1 1 LLIPERDPLEEIAESSPQTAANSAAELLK 29 1 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 LLIPERDPLEEIAES(0.03)S(0.97)PQTAANSAAELLK 227.46 4.49E-39 102730000 27943 30284 25754 14982 31982 33897 43872 44652 27028 33741 TRUE FALSE FALSE 25984.34 27884.18555 35726.63852 34878.85315 27970.51934 29715.13278 32894.76157 34485.71435 29370.8088 25292.03398 1.027372493 1.102488853 1.412564863 1.379045006 1.105902331 1.174881103 1.300597714 1.363501028 1.161267173 1 14.62639544 -11.42555789 1.244459618 0.211277898 1.233002054 0.22098312 0.126159427 68450.29523 6167.830492 149943.1477 0.038686274 3.75E-12 11.42555789 1.021724157 LLIVQDAS(ph)ER ddPTM_HeLa_A485_30min_R1 1 LLIVQDASER 10 0 C9JPX5;C9JKL2;O95772-2;O95772 C9JPX5 STARD3NL MLN64 N-terminal domain homolog 1 0 LLIVQDAS(1)ER 124.48 0.00011954 37969000 83588 88049 79750 106930 85575 75544 112300 95502 86971 185420 TRUE FALSE FALSE 102181.8622 98345.56463 109252.8437 112771.3151 77054.85253 79499.36703 88306.18759 72079.98476 104425.282 139198.2064 0.734074561 0.706514596 0.784872496 0.810149197 0.553562108 0.571123501 0.634391706 0.517822655 0.750191289 1 17.0867811 -8.019632734 23.68536476 1.000000008 0.664567492 0.544360932 0.092604924 598.3185241 721825.2276 0.098722561 0.025490056 9.56E-09 8.019632734 -0.335432517 LLIVQDAS(ph)ER ddPTM_HeLa_A486_30min_R1 4 LLIVQDASER 10 0 C9JPX5;C9JKL2;O95772-2;O95772 C9JPX5 STARD3NL MLN64 N-terminal domain homolog 1 0 LLIVQDAS(1)ER;LLIVQDAS(1)ER;LLIVQDAS(1)ER;LLIVQDAS(1)ER ;;; 139.78 1.76E-05 170650000 273318 324439 370614 95080 381100 379137 350840 330959 428851 429111 TRUE FALSE FALSE 254159.8196 298729.2721 514125.6662 221351.0451 333298.8844 332362.9317 263056.1212 255606.8605 466024.15 321658.8126 0.790153447 0.928714714 1.59835716 0.688154767 1.036187635 1.033277867 0.817811019 0.79465213 1.448815116 1 18.29517169 -7.754902145 24.99946354 1.224407568 0.972147662 0.140807009 0.259167673 286.4317233 1095393.567 0.182624846 0.065399436 1.76E-08 7.754902145 -0.252259906 LLKEGEEPTVYS(ph)DEEEPK ddPTM_HeLa_A485_30min_R1 3 LLKEGEEPTVYSDEEEPK 18 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPTVYS(1)DEEEPK;LLKEGEEPTVYS(1)DEEEPK;LLKEGEEPT(0.001)VY(0.001)S(0.999)DEEEPK ;; 215.68 1.46E-34 928640000 1020490 1044540 191210 820790 302171 773730 970180 1579700 372122 1602970 TRUE FALSE FALSE 1247494.48 1166689.867 261946.5359 865627.6793 272085.7943 814241.3064 762893.1174 1192276.098 446803.4721 1203379.079 1.036659604 0.969511509 0.217675827 0.719330836 0.226101483 0.676629102 0.633959099 0.990773496 0.371290709 1 20.19865975 -10.70076518 7.153470191 1.002562054 0.645875775 0.11923843 0.285981216 0.011765849 0.000492173 0.278805903 0.067254319 1.99E-11 10.70076518 -0.356686279 LLKEGEEPTVYS(ph)DEEEPK ddPTM_HeLa_A486_30min_R1 1 LLKEGEEPTVYSDEEEPK 18 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPT(0.001)VYS(0.999)DEEEPK 176.53 3.06E-13 112770000 217160 134700 37381 56771 67973 115780 148280 109970 84050 376240 TRUE FALSE FALSE 201938.2054 124025.8814 51855.9243 132165.757 59447.19252 101496.2408 111178.7757 84932.23163 91335.52167 282027.0551 0.716024232 0.439765899 0.183868616 0.468627937 0.210785424 0.35988122 0.394213157 0.301149234 0.323853758 1 18.10547404 -9.982897592 4.736745045 1.00000916 0.369199998 0.632760363 0.142124978 86460844.43 209987558.9 13074.55167 0.035343847 1.04E-10 9.982897592 -0.630809162 LLKEGEEPTVYS(ph)DEEEPKDESAR ddPTM_HeLa_A485_30min_R1 6 LLKEGEEPTVYSDEEEPKDESAR 23 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPT(0.008)VY(0.461)S(0.531)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR ;;;;; 220.38 2.37E-38 20568200000 2049548 1382089 615630 2868584 1505220 1965954 3569222 4616540 1388851 7630240 TRUE FALSE FALSE 2505462.882 1543712.286 843377.1555 3025287.48 1355355.012 2068888.311 2806628.562 3484326.327 1667580.656 5728161.592 0.43739389 0.269495241 0.147233478 0.528142831 0.236612566 0.361178413 0.489970214 0.608280034 0.291119695 1 22.44964076 -14 0.193356043 3.774465012 0.264229668 0.676923327 0.131670603 77.6344576 0.762514954 82.76892564 0.337737859 1.00E-14 14 -3.510235344 LLKEGEEPTVYS(ph)DEEEPKDESAR ddPTM_HeLa_A486_30min_R1 5 LLKEGEEPTVYSDEEEPKDESAR 23 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPT(0.001)VYS(0.999)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR;LLKEGEEPTVYS(1)DEEEPKDESAR ;;;; 260.7 1.46E-61 18496950000 3252578 2251047 1161319 2021168 2566667 3008917 4669915 3730266 1888164 6104787 TRUE FALSE FALSE 3024589.079 2072665.838 1611012.818 4705381.248 2244731.692 2637707.413 3501452.874 2880965.863 2051831.576 4576108.6 0.660952207 0.45293196 0.352048642 1.028249471 0.490532871 0.576408395 0.765159479 0.62956676 0.448379126 1 22.12568986 -10.94115602 2.66265258 1.276555421 0.603164244 0.300686755 0.182747195 16257084.82 10650911.19 27957220.73 0.045047165 1.15E-11 10.94115602 -0.673391176 LLKEGEEPTVYS(ph)DEEEPKDESARK ddPTM_HeLa_A485_30min_R1 1 LLKEGEEPTVYSDEEEPKDESARK 24 3 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPT(0.015)VYS(0.985)DEEEPKDESARK 163.73 5.59E-14 443340000 390010 210220 57411 558290 213290 362410 662400 930480 203110 1356400 TRUE FALSE FALSE 476766.379 234803.4003 78649.71797 588787.969 192054.0987 381385.2272 520872.8287 702278.3211 243872.314 1018274.443 0.4682101 0.230589506 0.077238232 0.578221297 0.188607404 0.374540705 0.511524994 0.689674897 0.239495664 1 19.95769501 -14 0.163524788 3.418052136 0.209623477 0.538666402 0.177626559 98.46957968 0.91327711 76.83299639 0.699223578 1.00E-14 14 -3.208428659 LLKPGEEPSEYT(ph)DEEDTK ddPTM_HeLa_A486_30min_R1 2 LLKPGEEPSEYTDEEDTK 18 1 U3KPU8;U3KQM0;O15173;O15173-2 U3KPU8 PGRMC2 Membrane-associated progesterone receptor component 2 1 0 LLKPGEEPS(0.004)EYT(0.996)DEEDTK;LLKPGEEPS(0.184)EY(0.044)T(0.772)DEEDTK ; 176.65 6.96E-13 604030000 528010 400550 153458 200412 257490 439870 527630 390740 359040 903640 TRUE FALSE FALSE 490999.2256 368808.9592 212881.0473 466569.2643 225193.2032 385603.3117 395611.3933 301777.0318 390161.8763 677362.6623 0.724869044 0.54447784 0.314279276 0.68880275 0.332455885 0.569271578 0.584046649 0.445517665 0.576001451 1 19.36956894 -8.042435844 20.85756382 1.000000002 0.520812945 0.554669895 0.126716279 675.7830212 332153.5167 0.116655435 0.030120293 9.07E-09 8.042435844 -0.479187058 LLKPGEEPSEYT(ph)DEEDTKDHNK ddPTM_HeLa_A485_30min_R1 3 LLKPGEEPSEYTDEEDTKDHNK 22 2 U3KPU8;U3KQM0;O15173;O15173-2 U3KPU8 PGRMC2 Membrane-associated progesterone receptor component 2 1 0 LLKPGEEPSEYT(1)DEEDTKDHNK;LLKPGEEPSEYT(1)DEEDTKDHNK;LLKPGEEPSEYT(1)DEEDTKDHNK ;; 277.38 3.66E-73 1918670000 1922210 789920 348329 3142190 676450 854950 1719090 1500030 732870 6339800 TRUE FALSE FALSE 2349798.983 882294.2726 477190.3923 3313839.883 609100.2628 899713.86 1351792.378 1132145.291 879950.2867 4759404.535 0.493717011 0.18537913 0.100262625 0.696271951 0.12797825 0.189039165 0.284025526 0.237875407 0.184886634 1 22.18234965 -10.33164393 4.236415447 1.001067651 0.274092328 0.608106916 0.173927797 234674309.1 4034.499361 2449767.199 0.041045037 4.66E-11 10.33164393 -0.726975323 LLKPGEEPSEYT(ph)DEEDTKDHNK ddPTM_HeLa_A486_30min_R1 5 LLKPGEEPSEYTDEEDTKDHNK 22 2 U3KPU8;U3KQM0;O15173;O15173-2 U3KPU8 PGRMC2 Membrane-associated progesterone receptor component 2 1 0 LLKPGEEPSEYT(1)DEEDTKDHNK;LLKPGEEPS(0.003)EYT(0.997)DEEDTKDHNK;LLKPGEEPSEYT(1)DEEDTKDHNK;LLKPGEEPS(0.005)EY(0.002)T(0.993)DEEDTKDHNK;LLKPGEEPSEYT(1)DEEDTKDHNK ;;;; 273.53 4.83E-73 2660780000 2067330 1613010 443859 1017213 984411 2349270 2533570 1875210 1411255 4127230 TRUE FALSE FALSE 1922420.843 1485189.213 615733.0918 2368123.271 860936.9931 2059440.953 1899643.989 1448265.619 1533583.72 3093744.744 0.621389611 0.480061975 0.199025176 0.765455287 0.278283137 0.665679015 0.614027383 0.468127056 0.495704671 1 21.56092274 -14 0.34067571 6.341591703 0.490106053 0.447025313 0.163306787 357.3745322 3.015940324 1388.553155 0.127168584 1.00E-14 14 -5.85148565 LLKPGEEPSEYT(ph)DEEDTKDHNKQD ddPTM_HeLa_A485_30min_R1 9 LLKPGEEPSEYTDEEDTKDHNKQD 24 3 U3KPU8;U3KQM0;O15173;O15173-2 U3KPU8 PGRMC2 Membrane-associated progesterone receptor component 2 1 0 LLKPGEEPS(0.001)EYT(0.999)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPS(0.019)EY(0.089)T(0.89)DEEDT(0.002)KDHNKQD;LLKPGEEPS(0.002)EYT(0.998)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPS(0.001)EYT(0.999)DEEDTKDHNKQD ;;;;;;;; 266.67 1.19E-61 27812860000 6808685 3109083 1109235 11629210 3339789 4239349 8136498 8979470 3033001 25700420 TRUE FALSE FALSE 8323253.489 3472663.211 1519587.186 12264484.3 3007267.88 4461314.758 6398068.733 6777240.903 3641696.48 19293778.28 0.431395726 0.179988759 0.078760477 0.635670428 0.155867235 0.231230747 0.331613054 0.351265616 0.188749784 1 24.20163236 -10.92390264 2.717442025 1.443620054 0.28582417 0.662145257 0.152752047 69350292.12 41043011.39 195691038.1 0.036591049 1.19E-11 10.92390264 -1.157795885 LLKPGEEPSEYT(ph)DEEDTKDHNKQD ddPTM_HeLa_A486_30min_R1 7 LLKPGEEPSEYTDEEDTKDHNKQD 24 3 U3KPU8;U3KQM0;O15173;O15173-2 U3KPU8 PGRMC2 Membrane-associated progesterone receptor component 2 1 0 LLKPGEEPS(0.001)EYT(0.999)DEEDTKDHNKQD;LLKPGEEPSEYT(0.999)DEEDTKDHNKQD;LLKPGEEPSEYT(1)DEEDTKDHNKQD;LLKPGEEPS(0.005)EY(0.142)T(0.853)DEEDTKDHNKQD;LLKPGEEPS(0.001)EYT(0.999)DEEDTKDHNKQD;LLKPGEEPS(0.007)EYT(0.993)DEEDTKDHNKQD;LLKPGEEPS(0.001)EYT(0.999)DEEDTKDHNKQD ;;;;;; 299.36 2.55E-89 26148920000 5521387 3838531 1230740 3540088 3355820 5943722 8358020 5878900 3515158 11407070 TRUE FALSE FALSE 5134366.284 3534351.824 1707315.488 8241503.77 2934901.764 5210446.011 6266754.994 4540402.805 3819854.726 8550665.424 0.600463944 0.413342313 0.199670482 0.963843556 0.343236651 0.609361465 0.732896761 0.530999937 0.446731867 1 23.02760527 -14 0.263333268 3.995689253 0.504012461 0.315385081 0.202145594 245.7962109 2.410220596 399.5689849 0.260178431 1.00E-14 14 -3.491676792 LLLAADPGGS(ph)PAQR ddPTM_HeLa_A485_30min_R1 2 LLLAADPGGSPAQR 14 0 Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3;Q5SQI0-2;Q5SQI0 Q5SQI0-7 ATAT1 Alpha-tubulin N-acetyltransferase 1 1 0 LLLAADPGGS(1)PAQR;LLLAADPGGS(1)PAQR ; 171.46 3.28E-12 435860000 367430 509270 519690 379610 553660 497140 590390 619940 426360 445540 TRUE FALSE FALSE 449163.5359 568824.6964 711944.9571 400347.1331 498535.6664 523169.4817 464248.3535 467898.743 511926.5412 334475.0776 1.342890894 1.700648971 2.128544112 1.196941596 1.490501684 1.564150864 1.387990869 1.398904655 1.530537178 1 18.35153919 -11.96827537 0.151822336 1.93E-09 1.735769804 0.331127426 0.234631738 76.62604134 1.230570938 26.25437519 1.324123702 1.08E-12 11.96827537 1.735769802 LLLAADPGGS(ph)PAQR ddPTM_HeLa_A486_30min_R1 3 LLLAADPGGSPAQR 14 0 Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3;Q5SQI0-2;Q5SQI0 Q5SQI0-7 ATAT1 Alpha-tubulin N-acetyltransferase 1 1 0 LLLAADPGGS(1)PAQR;LLLAADPGGS(1)PAQR;LLLAADPGGS(1)PAQR ;; 179.17 2.78E-17 375690000 386285 417935 377773 133939 456246 337032 384711 376370 314496 372574 TRUE FALSE FALSE 359208.4163 384816.3085 524056.8227 311816.7609 399019.3724 295452.4185 288452.2387 290678.7671 341756.7665 279279.0454 1.286198955 1.377891807 1.876463098 1.116506111 1.428747982 1.057911159 1.032845978 1.040818393 1.223710737 1 18.0913478 -6.009156175 1.479619275 1.067638934 1.469137885 0.443532583 0.190265458 0.370445207 1.659348413 0.077424075 0.085860706 9.79E-07 6.009156175 0.401498951 LLLAEDS(ph)EEEVDFLSER ddPTM_HeLa_A485_30min_R1 9 LLLAEDSEEEVDFLSER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER ;;;;;;;; 340.32 5.52E-92 1775005000 436868.1 577167 624979.9 509867.9 711356 513403.6 633771.2 654366.6 612202.4 733290.1 TRUE FALSE FALSE 534047.9017 644661.66 856185.9726 537720.6923 640530.8989 540284.6186 498360.8057 493882.1653 735065.8062 550494.3733 0.970124179 1.17105949 1.555303767 0.976795983 1.16355576 0.98145348 0.90529682 0.897161151 1.335283051 1 19.07036829 LLLAEDS(ph)EEEVDFLSER ddPTM_HeLa_A486_30min_R1 15 LLLAEDSEEEVDFLSER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(0.996)EEEVDFLS(0.004)ER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(0.999)EEEVDFLS(0.001)ER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER ;;;;;;;;;;;;;; 356.87 1.51E-105 2070033100 638393.7 735007.9 673916.1 292745.5 822336.9 698480.8 755087.2 736095.1 671321.5 748388.2 TRUE FALSE FALSE 593645.5983 676763.1972 934874.462 681526.3185 719191.738 612309.3405 566156.3961 568502.3146 729512.1881 560986.9235 1.058216464 1.20637963 1.666481736 1.21487024 1.28201159 1.091485942 1.009214961 1.013396731 1.300408543 1 19.09760762 -6.245680294 3.717319611 1.076740483 1.301804483 0.271256744 0.1653755 0.320659601 9.842046234 0.060775007 0.057497476 5.68E-07 6.245680294 0.225064 LLLAEDS(ph)EEEVDFLSERR ddPTM_HeLa_A485_30min_R1 3 LLLAEDSEEEVDFLSERR 18 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR ;; 310.92 2.34E-89 532792000 97226 212227 191134 69281 221455 200953 220631 377638 176300 112373 TRUE FALSE FALSE 118853.5883 237045.1015 261842.4203 73065.6456 199406.1626 211474.5883 173491.3845 285021.6884 211681.7929 84360.47917 1.408877586 2.809907007 3.103851743 0.866112264 2.363739094 2.506796908 2.056548115 3.378616281 2.509253088 1 16.36427967 -5.97524984 24.99929707 2.425520129 2.106866444 0.008286189 0.812721507 1009.808472 1019968.542 0.251341221 0.284982407 1.06E-06 5.97524984 -0.318653684 LLLAEDS(ph)EEEVDFLSERR ddPTM_HeLa_A486_30min_R1 3 LLLAEDSEEEVDFLSERR 18 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR ;; 247.35 6.29E-46 520469000 177437 158478 161714 57611.3 238634 118397 185672 187074 127400 173565 TRUE FALSE FALSE 164999.5826 145919.6261 224333.9917 134122.0179 208702.2985 103790.3819 139214.9018 144481.334 138443.1346 130103.1943 1.268220842 1.121568359 1.724277355 1.030889508 1.604128935 0.797754294 1.070034464 1.110513349 1.064102502 1 16.98929686 -6.266058877 24.99842206 1.019235112 1.340221677 0.403998173 0.20692385 425.8998759 2304750.977 0.068473384 0.062395043 5.42E-07 6.266058877 0.320986565 LLLAS(ph)PPNER ddPTM_HeLa_A485_30min_R1 5 LLLASPPNER 10 0 Q52LW3 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 LLLAS(1)PPNER;LLLAS(1)PPNER;LLLAS(1)PPNER;LLLAS(1)PPNER;LLLAS(1)PPNER ;;;; 136.93 3.66E-05 1237320000 686476 973301 965191 678618 1101762 867788 983753 1080640 819342 922950 TRUE FALSE FALSE 839180.2179 1087120.085 1322255.316 715689.183 992066.7068 913224.0378 773566.135 815611.3456 983776.4239 692875.5506 1.211155765 1.568997613 1.908359033 1.032926017 1.431810815 1.318020295 1.116457543 1.17713974 1.419845776 1 19.40223672 -5.277962472 24.9870669 1.230501214 1.563453534 0.368521551 0.208605145 873.8478541 1321475.462 0.058541195 0.087099764 5.27E-06 5.277962472 0.33295232 LLLAS(ph)PPNER ddPTM_HeLa_A486_30min_R1 5 LLLASPPNER 10 0 Q52LW3 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 LLLAS(1)PPNER;LLLAS(1)PPNER;LLLAS(1)PPNER;LLLAS(1)PPNER;LLLAS(1)PPNER ;;;; 136.27 4.09E-05 1067842000 784443 954624 934801 336460 1185336 900390 988219 1040053 787193 836553 TRUE FALSE FALSE 729457.5966 878976.1176 1296780.982 783295.8837 1036660.106 789309.0363 740956.1539 803255.6361 855427.5231 627074.6838 1.163270684 1.401708824 2.067984908 1.249126945 1.653168487 1.258716157 1.181607507 1.280956889 1.36415573 1 19.25827775 -6.355633478 6.719914696 1.229667195 1.517522086 0.25592669 0.246683065 0.384025215 23.35192692 0.087785328 0.077247756 4.41E-07 6.355633478 0.287854891 LLLDDS(ph)FETK ddPTM_HeLa_A486_30min_R1 1 LLLDDSFETK 10 0 A0A0C4DGF9;O00443-2;O00443;E9PPP3 A0A0C4DGF9 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 0 LLLDDS(1)FETK 114.82 0.00038462 0 54842 46931 29303 35072 56920 71110 74377 66706 41608 97400 TRUE FALSE FALSE 50997.859 43212.01664 40649.90636 81649.38844 49780.56284 62337.17119 55767.08792 51518.49998 45214.61494 73010.40603 0.698501238 0.591861065 0.556768666 1.118325358 0.681828325 0.853812142 0.763823829 0.70563229 0.619290008 1 16.15581448 LLLDIPLQT(ph)PHK ddPTM_HeLa_A485_30min_R1 1 LLLDIPLQTPHK 12 0 P49792;J3KNE0;A6NKT7;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 LLLDIPLQT(1)PHK 127.18 4.75E-05 82307000 126350 81060 90389 153970 167440 96018 139810 118150 100000 172290 TRUE FALSE FALSE 154456.1216 90539.26187 123827.6525 162380.9912 150769.0857 101045.354 109938.4514 89173.52725 120069.0827 129341.2738 1.194175046 0.700002862 0.957371525 1.25544605 1.165668787 0.781230547 0.849987387 0.689443707 0.928312203 1 16.9808232 -6.274648562 24.8641362 0.830397031 1.040600739 0.274567335 0.164116161 1044.092295 1965328.197 0.060477939 0.05365254 5.31E-07 6.274648562 0.210203707 LLLDIPLQT(ph)PHK ddPTM_HeLa_A486_30min_R1 1 LLLDIPLQTPHK 12 0 P49792;J3KNE0;A6NKT7;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 LLLDIPLQT(1)PHK 130.95 3.50E-05 98012000 163350 226090 162600 96809 199180 276720 295170 263080 175780 196330 TRUE FALSE FALSE 151900.0085 208173.805 225563.0746 225376.2445 174196.9871 242581.0999 221315.344 203182.427 191016.7519 147167.6901 1.032155961 1.414534704 1.532694265 1.53142476 1.183663255 1.648331232 1.503831064 1.380618442 1.297953048 1 17.16710144 -8.164326128 2.061674531 1.000700765 1.417428203 0.335539824 0.170577185 0.711453126 5.731150222 0.163742986 0.045348766 6.85E-09 8.164326128 0.416727438 LLLDIPLQT(ph)PHKLVDTGR ddPTM_HeLa_A485_30min_R1 2 LLLDIPLQTPHKLVDTGR 18 1 P49792;J3KNE0;A6NKT7;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 LLLDIPLQT(1)PHKLVDTGR;LLLDIPLQT(1)PHKLVDTGR ; 208.39 1.85E-25 574020000 385840 336900 262451 299730 515020 404430 582980 671590 233980 349920 TRUE FALSE FALSE 471668.7769 376297.5244 359542.5464 316103.4909 463742.8005 425605.3294 458421.5605 506881.4995 280937.6398 262691.3838 1.795524353 1.432469992 1.368688006 1.203326452 1.765352155 1.620172399 1.745095533 1.929570328 1.069458906 1 18.00300936 -7.868438237 7.654065133 1.007714473 1.589828395 0.544797033 0.209205236 0.196809341 12.31417823 0.216771552 0.056115314 1.35E-08 7.868438237 0.582113922 LLLDIPLQT(ph)PHKLVDTGR ddPTM_HeLa_A486_30min_R1 2 LLLDIPLQTPHKLVDTGR 18 1 P49792;J3KNE0;A6NKT7;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 LLLDIPLQT(1)PHKLVDTGR;LLLDIPLQT(1)PHKLVDTGR ; 216.65 3.18E-34 1194880000 701010 779970 604290 393410 916400 857540 1149190 1080470 505420 850680 TRUE FALSE FALSE 651872.819 718162.3366 838287.2714 915878.3618 801456.5669 751745.4336 861650.5071 834470.5675 549230.2125 637664.191 1.022282305 1.126239087 1.314621839 1.436302014 1.256863061 1.178904891 1.351260615 1.308636394 0.861315753 1 19.28243734 -7.759757279 24.9998432 0.930657788 1.254984088 0.546426827 0.116066493 33.24812797 494206.8617 0.094756238 0.031546076 1.74E-08 7.759757279 0.324326301 LLLDPSS(ph)PPTK ddPTM_HeLa_A485_30min_R1 3 LLLDPSSPPTK 11 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LLLDPS(0.193)S(0.806)PPTK;LLLDPS(0.145)S(0.855)PPTK;LLLDPS(0.435)S(0.553)PPT(0.013)K ;; 111.63 0.00050112 187075000 750790 576720 459007 1040290 723100 682940 1026160 913320 611940 1721060 TRUE FALSE FALSE 917800.6453 644162.3872 628812.7902 1097118.409 651105.625 718697.6824 806912.533 689326.838 734750.745 1292031.416 0.710354744 0.498565576 0.486685372 0.849142208 0.503939469 0.55625403 0.624530118 0.533521731 0.568678699 1 20.30120972 -10.43629471 3.306968151 1.005588793 0.589636892 0.567121613 0.106804947 41068442.01 55718852.57 2158816.026 0.025825815 3.66E-11 10.43629471 -0.415951901 LLLDPSS(ph)PPTK ddPTM_HeLa_A486_30min_R1 2 LLLDPSSPPTK 11 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LLLDPS(0.14)S(0.86)PPTK;LLLDPS(0.135)S(0.865)PPTK ; 170.04 3.59E-08 156252000 926730 1003510 670800 385360 1017910 1149250 1211360 1157040 1051160 1371340 TRUE FALSE FALSE 861771.0126 923988.2129 930551.7246 897137.555 890234.2362 1007467.22 908264.9155 893607.25 1142275.395 1027947.538 0.838341434 0.898867091 0.905252156 0.872746441 0.866030807 0.980076495 0.883571274 0.869312117 1.111219545 1 19.97133521 -7.754287524 24.99976829 1.055609789 0.89163791 0.703252555 0.043197857 76.71229385 268159.5833 0.029730438 0.010712742 1.76E-08 7.754287524 -0.163971878 LLLDTS(ph)PPGGVVLSSFR ddPTM_HeLa_A485_30min_R1 2 LLLDTSPPGGVVLSSFR 17 0 O15211;A2AB89 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 0 LLLDT(0.151)S(0.849)PPGGVVLSSFR;LLLDT(0.001)S(0.999)PPGGVVLSSFR ; 235.69 3.28E-42 385900000 447250 654680 711810 446290 677070 588120 690590 763710 533040 647140 TRUE FALSE FALSE 546739.2195 731239.131 975138.1399 470669.6926 609658.5335 618913.0538 543039.8049 576408.925 640016.2387 485819.9077 1.125394844 1.50516502 2.007200867 0.968815162 1.254906445 1.273955727 1.117780059 1.186466252 1.317394015 1 18.89006208 -5.29203902 24.99910815 1.174627573 1.541845103 0.381744947 0.224555311 718.0508501 586627.2589 0.063472079 0.094156594 5.10E-06 5.29203902 0.367217529 LLLDTS(ph)PPGGVVLSSFR ddPTM_HeLa_A486_30min_R1 2 LLLDTSPPGGVVLSSFR 17 0 O15211;A2AB89 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 0 LLLDT(0.03)S(0.969)PPGGVVLS(0.001)S(0.001)FR;LLLDT(0.002)S(0.998)PPGGVVLSSFR ; 180.81 1.47E-17 334310000 297810 335210 323670 110223 390920 305100 325710 346240 295450 336970 TRUE FALSE FALSE 276935.0569 308646.7388 449003.6922 256604.7144 341887.1684 267459.864 244213.913 267408.7104 321059.8439 252590.5187 1.096379462 1.221925274 1.777595194 1.015892107 1.353523363 1.058867393 0.966837212 1.058664877 1.271068469 1 17.94644096 -6.268264284 24.11315075 1.068238477 1.300631045 0.228188599 0.203848022 516.0490114 1823251.912 0.071547208 0.064554285 5.39E-07 6.268264284 0.232392568 LLLEFK ddPTM_HeLa_A485_30min_R1 2 LLLEFK 6 0 Q9H672-2;Q9H672 Q9H672-2 ASB7 Ankyrin repeat and SOCS box protein 7 0 0 ; ; 118.06 0.022343 61933000 152352 135129 136151 173968 209270 191946 244630 249470 146055 249500 FALSE FALSE TRUE 186242.1768 150931.1611 186518.9206 183471.4313 188434.344 201995.9958 192362.8021 188287.0913 175366.8988 187304.2417 0.994329734 0.805807491 0.995807243 0.97953698 1.006033512 1.078437914 1.027007185 1.005247343 0.936267632 1 17.51502405 -4.9287077 12.9063182 1.007296249 0.900068784 0.370852821 0.05393956 0.795681303 141.8563903 0.01374674 0.028629593 1.18E-05 4.9287077 -0.107227465 LLLEFK ddPTM_HeLa_A486_30min_R1 2 LLLEFK 6 0 Q9H672-2;Q9H672 Q9H672-2 ASB7 Ankyrin repeat and SOCS box protein 7 0 0 ; ; 118.03 0.022377 66301000 124062 149642 112338 61112 174216 181824 205325 192887 140458 210023 FALSE FALSE TRUE 115365.8945 137783.8229 155838.2821 142271.8244 152364.2048 159392.4035 153950.5133 148970.8408 152633.0125 157431.8738 0.73279884 0.875196487 0.989877579 0.903704066 0.9678104 1.012453195 0.977886559 0.946255909 0.969517855 1 17.26436813 -4.350559351 2.038767515 0.969138465 0.688589688 0.860911734 0.029565345 0.202119799 1.067927086 0.008132386 0.098246746 4.46E-05 4.350559351 -0.280548777 LLLEFTDTSYEEKR ddPTM_HeLa_A486_30min_R1 1 LLLEFTDTSYEEKR 14 1 A0A0A0MTN3;P21266 A0A0A0MTN3 GSTM3 Glutathione S-transferase Mu 3 0 0 81.311 0.011598 7629700 11560 12466 10927 5369.1 16179 13526 15656 15141 10392 14824 FALSE FALSE TRUE 10749.7037 11478.14876 15158.22704 12499.53614 14149.67896 11857.29964 11738.70321 11693.72483 11292.78693 11111.97391 0.967398212 1.032953177 1.364134505 1.124870904 1.273372226 1.067074107 1.056401257 1.052353517 1.016271908 1 13.4398275 -6.500143452 22.5838558 1.039350562 1.157529631 0.229637 0.105537584 364.0030381 361579.5903 0.03909184 0.034155906 3.16E-07 6.500143452 0.118179069 LLLERPS(ph)PIR ddPTM_HeLa_A485_30min_R1 6 LLLERPSPIR 10 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR ;;;;; 141.37 3.38E-06 14130530000 2677870 3729590 3633040 2837460 3490960 3009130 3423550 2973390 3096530 3429610 TRUE FALSE FALSE 3273552.943 4165733.107 4977052.679 2992463.255 3143387.765 3166683.394 2692080.575 2244161.44 3717975.168 2574671.344 1.271444975 1.617966936 1.933082718 1.162269997 1.220888939 1.22993694 1.045601638 0.871630255 1.444058162 1 21.29595685 -5.366512319 8.387038687 1.135233372 1.607713186 0.51918404 0.206595746 0.242013184 17.42048965 0.058470997 0.086825985 4.30E-06 5.366512319 0.472479814 LLLERPS(ph)PIR ddPTM_HeLa_A486_30min_R1 8 LLLERPSPIR 10 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR;LLLERPS(1)PIR ;;;;;;; 145 2.65E-06 14371210000 5719080 6602940 5253550 1646512 5914940 5153010 5447020 5407110 4898430 5578730 TRUE FALSE FALSE 5318202.025 6079698.987 7287865.255 3833163.146 5173033.071 4517284.018 4084117.983 4176029.089 5323029.856 4181779.697 1.271755667 1.453854442 1.742766426 0.916634406 1.237041032 1.080230033 0.976645897 0.998624842 1.272910159 1 21.99568563 -5.270106669 24.9997234 1.072450035 1.48589841 0.623379235 0.149785281 399.8217536 1153235.793 0.041898593 0.063233043 5.37E-06 5.270106669 0.413448375 LLLERPS(ph)PIRDR ddPTM_HeLa_A485_30min_R1 9 LLLERPSPIRDR 12 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR ;;;;;;;; 160.64 1.42E-10 47647391000 4267046 5934314 6385230 4405335 6979360 5555359 6558109 7280433 5378299 5657901 TRUE FALSE FALSE 5216235.662 6628280.401 8747392.289 4645987.296 6284470.412 5846229.007 5156915.437 5494895.391 6457674.277 4247490.407 1.228074736 1.560516862 2.059426026 1.093819374 1.479572597 1.376396047 1.21410879 1.293680471 1.520350527 1 22.01817926 -5.297680416 24.99990531 1.304064249 1.61045774 0.284810498 0.240407215 777.9811424 536667.6587 0.067097961 0.099525368 5.04E-06 5.297680416 0.306393491 LLLERPS(ph)PIRDR ddPTM_HeLa_A486_30min_R1 8 LLLERPSPIRDR 12 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR;LLLERPS(1)PIRDR ;;;;;;; 205.98 1.37E-17 28649390000 3539800 3625170 3450170 1189010 4339380 3078410 3634560 3646330 2974000 3379410 TRUE FALSE FALSE 3291678.3 3337898.327 4786168.223 2768075.369 3795094.497 2698627.073 2725154.646 2816140.258 3231788.715 2533183.74 1.299423428 1.317669253 1.889388499 1.092725856 1.498152083 1.065310436 1.075782464 1.111699958 1.275781407 1 21.27252029 -6.264901363 24.98816815 1.110825316 1.421770057 0.379952613 0.200342241 336.7909764 2430905.763 0.068354866 0.062719903 5.43E-07 6.264901363 0.310944742 LLLERPS(ph)PIRDRR ddPTM_HeLa_A485_30min_R1 2 LLLERPSPIRDRR 13 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LLLERPS(1)PIRDRR;LLLERPS(1)PIRDRR ; 114.63 0.0012765 1882650000 168698 414830 311940 133101 407170 496840 476640 917520 220350 149082 TRUE FALSE FALSE 206224.2881 463340.76 427339.5869 140371.9706 366630.7251 522853.7741 374801.9702 692496.7814 264572.2238 111918.6011 1.842627465 4.13997991 3.818307081 1.254232713 3.275869442 4.671732574 3.348880049 6.187503908 2.363970076 1 16.77209031 -6.005162055 24.98387799 3.844458168 2.853364517 0.029021787 1.512214815 594.9014412 2879289.53 0.457703074 0.504804034 9.88E-07 6.005162055 -0.991093651 LLLERPS(ph)PIRDRR ddPTM_HeLa_A486_30min_R1 2 LLLERPSPIRDRR 13 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 LLLERPS(1)PIRDRR;LLLERPS(1)PIRDRR ; 114.96 0.0012329 655970000 345870 261531 322670 176195 654890 240835 370160 447750 192522 336640 TRUE FALSE FALSE 321626.2991 240806.3311 447616.4654 410190.8644 572747.5896 211123.2263 277542.0528 345807.0993 209209.962 252343.1528 1.274559248 0.954281217 1.773840345 1.625528015 2.269717181 0.836651298 1.099859654 1.370384318 0.829069304 1 17.94502742 -6.339460225 25 1.054883395 1.558246518 0.385617624 0.347224625 145.7049356 46686.61054 0.129912025 0.114571644 4.58E-07 6.339460225 0.503363123 LLLIQAFRPDR ddPTM_HeLa_A485_30min_R1 2 LLLIQAFRPDR 11 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 161.67 5.50E-06 76117000 52040 57775 77050 62365 87537 61941 72868 75603 60945 86003 FALSE FALSE TRUE 63616.11846 64531.28367 105554.0013 65771.84203 78821.50892 65184.13498 57299.15652 57061.24571 73176.10248 64564.03487 0.985318198 0.999492733 1.634873061 1.01870712 1.220826875 1.00960442 0.887477938 0.883793056 1.133388002 1 15.97844312 -6.364692842 4.605079819 0.964586716 1.179229784 0.203468873 0.186488261 0.364766643 12.67344411 0.068586802 0.060108378 4.32E-07 6.364692842 0.214643067 LLLIQAFRPDR ddPTM_HeLa_A486_30min_R1 2 LLLIQAFRPDR 11 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 138.99 0.00036461 89629000 69001 95719 99486 32784 123607 91894 109247 99946 94502 92631 FALSE FALSE TRUE 64164.38622 88133.87784 138009.6435 76322.80881 108103.0575 80557.05259 81912.2451 77190.47761 102693.5094 69435.59467 0.924084924 1.269289595 1.987592159 1.099188524 1.556882432 1.160169405 1.179686665 1.111684547 1.478975012 1 16.0833878 -6.296329127 24.59591364 1.192682346 1.381510249 0.089222973 0.287489874 1339.485647 944280.8115 0.10156343 0.089574791 5.05E-07 6.296329127 0.188827903 LLLLESVSGLLQPR ddPTM_HeLa_A485_30min_R1 2 LLLLESVSGLLQPR 14 0 C9JFV4;Q8IZL8;I3L1P4;I3L4M7;I3L445 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 0 0 ; ; 168.3 3.54E-07 4321900 5362.4 7569.4 8016.5 4477.9 8134.6 6148.8 8187.5 8091.6 5919.9 6729.4 FALSE FALSE TRUE 6555.24738 8454.575485 10982.13694 4722.516338 7324.690662 6470.74166 6438.173739 6107.122413 7107.969629 5051.884425 1.29758459 1.673548873 2.173869396 0.934802925 1.449892762 1.280857026 1.274410338 1.208880073 1.406993714 1 12.30260592 -5.27327083 24.99844933 1.245064626 1.710855775 0.451662261 0.247893707 682.4518592 1441938.429 0.068825412 0.103022156 5.33E-06 5.27327083 0.465791149 LLLLESVSGLLQPR ddPTM_HeLa_A486_30min_R1 2 LLLLESVSGLLQPR 14 0 C9JFV4;Q8IZL8;I3L1P4;I3L4M7;I3L445 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 0 0 ; ; 115.18 0.0014041 4231500 2801.1 2443.5 2473 1280.52 3162.1 3179.4 3663.2 2690.8 2458.5 2817.1 FALSE FALSE TRUE 2604.757355 2249.868161 3430.611829 2981.115274 2765.479933 2787.157954 2746.628615 2078.16358 2671.604759 2111.679824 1.233500138 1.065440005 1.624589008 1.41172693 1.309611382 1.319877153 1.300684215 0.98412816 1.265156171 1 11.04417539 -7.150062819 6.13991493 1.094696095 1.330090492 0.351635933 0.149606365 0.282398545 13.4415926 0.073703971 0.042138621 7.08E-08 7.150062819 0.235394397 LLLLLR ddPTM_HeLa_A485_30min_R1 1 LLLLLR 6 0 A0A087WXG5;M0QYC9;M0R2L2;Q9HA65-3;Q9HA65-2;Q9HA65 A0A087WXG5 TBC1D17 TBC1 domain family member 17 0 0 128.65 0.017023 14605000 24248 26116 31321 25463 32393 20487 26507 21917 24145 37197 FALSE FALSE TRUE 29641.88395 29170.03902 42907.94128 26853.97921 29167.83918 21559.66764 20843.56291 16541.82139 28990.68003 27924.47246 1.061502021 1.044604838 1.53657124 0.961664692 1.044526059 0.772070723 0.746426381 0.592377221 1.038181834 1 14.76924241 -5.903304424 1.861595909 0.801615152 1.187812444 0.404548099 0.185344317 0.312454629 2.21622917 0.066997117 0.079111605 1.25E-06 5.903304424 0.386197292 LLLPGELAK ddPTM_HeLa_A485_30min_R1 2 LLLPGELAK 9 0 P58876;Q96A08;A0A2R8Y619;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ; ; 182.39 5.90E-08 678470000 2065600 2430000 2097100 2341800 2802000 2750200 3501200 3854400 2351100 3426000 FALSE FALSE TRUE 2525085.594 2714167.362 2872904.558 2469726.604 2523023.042 2894196.219 2753140.018 2909102.357 2822944.204 2571961.251 0.981774353 1.055290923 1.117009269 0.960250316 0.980972416 1.125287645 1.070443817 1.131083276 1.097584267 1 21.29443748 -6.266087225 24.97584023 1.092170256 1.023246797 0.266065329 0.053760175 551.6784765 2964514.574 0.01897438 0.017294792 5.42E-07 6.266087225 -0.06892346 LLLPGELAK ddPTM_HeLa_A486_30min_R1 3 LLLPGELAK 9 0 P58876;Q96A08;A0A2R8Y619;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;; ;; 167.24 6.41E-06 848470000 2617900 2641610 1944810 1049500 3703840 2470670 2968350 2917100 2240700 2832330 FALSE FALSE TRUE 2434398.729 2432279.203 2697892.516 2443289.039 3239269.85 2165863.855 2225637.434 2252940.01 2434925.68 2123096.133 1.146626708 1.145628389 1.270734977 1.150814135 1.525729241 1.020144035 1.048298002 1.061157795 1.146874907 1 21.01773827 LLLPGELAK(ac)HAVSEGTK ddPTM_HeLa_A485_30min_R1 2 LLLPGELAKHAVSEGTK 17 1 P58876;Q96A08;A0A2R8Y619;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; LLLPGELAK(1)HAVSEGTK;LLLPGELAK(1)HAVSEGTK 199.76 1.36E-18 94862000 59760 63278 56294 60265 78943 69652 89732 98367 60611 97629 FALSE TRUE FALSE 73053.40583 70677.81165 77119.49319 63557.12435 71083.15773 73298.87102 70560.02516 74242.33902 72775.07174 73291.88703 0.996746145 0.96433336 1.052224145 0.867178168 0.969863932 1.00009529 0.962726272 1.012968038 0.992948534 1 16.16136589 -7.260659122 24.98510695 1.002218714 0.972815263 0.082480295 0.04378436 179.8929472 5760718.734 0.022022024 0.011716459 5.49E-08 7.260659122 -0.029403451 LLLPGELAK(ac)HAVSEGTK ddPTM_HeLa_A486_30min_R1 1 LLLPGELAKHAVSEGTK 17 1 P58876;Q96A08;A0A2R8Y619;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 1 LLLPGELAK(1)HAVSEGTK 241.32 1.90E-33 40945000 68173 69802 47286 21736 72844 62913 70667 73831 61588 85991 FALSE TRUE FALSE 63394.42475 64270.63531 65596.40556 50602.50648 63707.22628 55151.43371 52985.36916 57021.29302 66926.49743 64458.29389 0.983495233 0.997088682 1.017656559 0.785042598 0.988348007 0.855614233 0.822010109 0.884623057 1.038291481 1 15.97607838 LLLPLFR ddPTM_HeLa_A485_30min_R1 1 LLLPLFR 7 0 Q9BV86-2;Q9BV86 Q9BV86-2 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed" 0 0 126.25 0.0086718 0 6720.4 6935.2 6451.8 4579.1 7428.9 6273.8 7153.4 7845.5 5348 6367.3 FALSE FALSE TRUE 8215.329795 7746.211312 8838.589302 4829.244638 6689.252632 6602.286467 5625.017652 5921.378824 6421.294545 4780.049291 1.718670519 1.620529589 1.849058192 1.010291807 1.399410806 1.381217235 1.176769801 1.238769406 1.343353207 1 12.22280978 -1 0.221317406 1.08023495 4.94065171 0.545898378 0.182846106 39.47139256 0.505937143 0.284939713 54.54631565 0.1 1 3.860416759 LLLPWLEAR ddPTM_HeLa_A486_30min_R1 2 LLLPWLEAR 9 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 121.52 0.017074 22714900 29663 37520 26311 20806.5 45079 29465 34647 34836 27092 33514 FALSE FALSE TRUE 27583.77688 34546.77855 36499.32383 48438.5835 39424.77148 25829.90788 25977.95414 26904.60326 29440.35637 25121.87626 1.097998278 1.375167133 1.452890041 1.928143543 1.569340246 1.028183867 1.034076988 1.070963131 1.171901178 1 14.6166566 -6.264008224 24.96398458 1.063775959 1.501489921 0.536973465 0.196397766 195.3987274 1898872.081 0.074193665 0.068451962 5.44E-07 6.264008224 0.437713962 LLLQVQHASK ddPTM_HeLa_A485_30min_R1 2 LLLQVQHASK 10 0 P05141;V9GYG0;P12235;P12236 P05141;P12236 SLC25A5;SLC25A4;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 ; ; 152.07 0.00010404 95218000 166278 259220 177221 68565 200279 180714 201607 206640 197277 304210 FALSE FALSE TRUE 203265.9674 289533.5241 242782.4227 72310.53233 180338.5195 190175.9056 158532.0175 155961.216 236868.6844 228376.0456 0.890049422 1.267792878 1.063081822 0.316629234 0.789656021 0.832731406 0.694170954 0.682914075 1.037187082 1 17.80105181 -5.037033344 24.98310036 0.74765572 1.100550498 0.3190502 0.205334993 547.0569748 369050.1711 0.053886021 0.093369315 9.18E-06 5.037033344 0.352894779 LLLQVQHASK ddPTM_HeLa_A486_30min_R1 2 LLLQVQHASK 10 0 P05141;V9GYG0;P12235;P12236 P05141;P12236 SLC25A5;SLC25A4;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 ; ; 164.43 3.54E-06 66611000 183237 229560 235910 19007.3 329640 184945 170163 161050 360150 102387 FALSE FALSE TRUE 170393.0325 211368.8296 327260.6699 44249.95498 288293.4774 162128.3663 127586.4176 124382.4307 391368.092 76748.62877 2.220144324 2.754040469 4.264058852 0.576556945 3.756333918 2.112459452 1.662393448 1.620646944 5.099349633 1 16.22785335 -5.229934858 24.99657073 2.318126196 3.046876438 0.072024826 1.333555479 2171.898981 1723243.3 0.348840213 0.604134381 5.89E-06 5.229934858 0.728750242 LLLSK(ac)GHSCYRPR ddPTM_HeLa_A485_30min_R1 2 LLLSKGHSCYRPR 13 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 1 ; LLLSK(1)GHSCYRPR;LLLSK(1)GHSCYRPR 128.35 0.00024513 36207000 15358.5 20784.4 26533 16597.2 32719 19556 22644.5 23241 21906 23489 FALSE TRUE FALSE 18774.94534 23214.95478 36348.66083 17503.86301 29461.38148 20579.92192 17806.31759 17541.10831 26302.33327 17633.62458 1.064724116 1.316516333 2.061326681 0.992641242 1.670750182 1.167084046 1.009793392 0.994753417 1.491601068 1 14.10604143 -6.447372993 9.722624855 1.11859582 1.426792166 0.176869732 0.312133091 0.870372266 108.09302 0.108419217 0.095495143 3.57E-07 6.447372993 0.308196346 LLLSK(ac)GHSCYRPR ddPTM_HeLa_A486_30min_R1 1 LLLSKGHSCYRPR 13 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 1 LLLSK(1)GHSCYRPR 107.93 0.0018413 12032000 8720.7 15818 13796 5297.2 20743 12147 14723 15757 13203 11723 FALSE TRUE FALSE 8109.423964 14564.52407 19138.18067 12332.14931 18141.21952 10648.42664 11039.14968 12169.47507 14347.44667 8787.484496 0.922837926 1.657416759 2.17789069 1.403376508 2.064438296 1.211771884 1.256235465 1.384864472 1.632713739 1 13.10123452 -6.306459422 24.9987452 1.318615981 1.662031972 0.191720363 0.355139767 791.9214732 439736.0018 0.124945906 0.110192396 4.94E-07 6.306459422 0.343415991 LLLYLR ddPTM_HeLa_A485_30min_R1 2 LLLYLR 6 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1;Q58EX7-2;Q58EX7 Q9BXP5-5;Q58EX7-2 SRRT;PLEKHG4 Serrate RNA effector molecule homolog;Puratrophin-1 0 0 ; ; 170.59 0.0029163 133461000 134938 172957 190849 130573 214229 182762 221590 211370 139492 190740 FALSE FALSE TRUE 164954.4926 193182.8166 261451.987 137705.8724 192899.6086 192331.1357 174245.4863 159531.1761 167486.7649 143192.0283 1.151980976 1.349117118 1.825883676 0.961686722 1.347139298 1.343169295 1.216865829 1.114106546 1.169665427 1 17.12759165 -7.328412738 0.535613138 1.004616812 1.372729526 0.218795192 0.20554059 1.288044584 0.839620143 0.209454276 0.128487619 4.69E-08 7.328412738 0.368112714 LLLYLR ddPTM_HeLa_A486_30min_R1 2 LLLYLR 6 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1;Q58EX7-2;Q58EX7 Q9BXP5-5;Q58EX7-2 SRRT;PLEKHG4 Serrate RNA effector molecule homolog;Puratrophin-1 0 0 ; ; 184.12 0.00015033 160541000 200389 239780 248120 76173 307890 228610 268040 268710 222410 247810 FALSE FALSE TRUE 186342.7659 220778.9595 344198.7089 177334.5936 269271.5652 200406.4225 200973.557 207530.5989 241688.6779 185756.763 1.003154679 1.188537935 1.852953848 0.954660227 1.449592256 1.078864744 1.081917846 1.117216921 1.30110298 1 17.50305521 -6.287958698 24.23656467 1.121027621 1.296824971 0.111788936 0.244552421 1235.916657 1129525.584 0.085633086 0.075547303 5.15E-07 6.287958698 0.17579735 LLMLQNALTTMLPHHAGLNPR ddPTM_HeLa_A485_30min_R1 2 LLMLQNALTTMLPHHAGLNPR 21 0 Q10570;A0A087X101 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 0 ; ; 158.45 6.17E-17 12025800 11131.8 13999.6 14079.6 10827.7 13593.4 11180.6 15339.5 16116.1 10505.6 14046 FALSE FALSE TRUE 13608.03051 15636.73144 19288.22994 11419.18983 12239.99337 11765.99893 12062.09051 12163.60121 12613.97756 10544.5907 1.290522401 1.482914974 1.82920613 1.082942919 1.160784114 1.115832683 1.143912633 1.153539436 1.196251037 1 13.36421548 -5.287479048 24.92972891 1.130577356 1.529084586 0.671212392 0.132130245 415.2168863 397517.3255 0.037222166 0.055229687 5.16E-06 5.287479048 0.39850723 LLMLQNALTTMLPHHAGLNPR ddPTM_HeLa_A486_30min_R1 2 LLMLQNALTTMLPHHAGLNPR 21 0 Q10570;A0A087X101 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 0 0 ; ; 153.86 5.47E-13 13640400 11552.8 14847.3 13237.6 4898 16695.7 12344.3 15805.5 14699.6 13584 14646.1 FALSE FALSE TRUE 10743.00838 13670.74588 18363.55324 11402.79153 14601.56962 10821.38577 11850.79673 11352.82197 14761.47206 10978.62123 0.97853894 1.245215186 1.672664796 1.038636027 1.330000309 0.985678033 1.079443081 1.034084493 1.344565201 1 13.42240926 -6.253554076 24.89967638 1.090302499 1.263982322 0.145977965 0.197742148 1143.113449 3609647.816 0.066184124 0.065044719 5.58E-07 6.253554076 0.173679823 LLNILMQLR ddPTM_HeLa_A485_30min_R1 3 LLNILMQLR 9 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370;O60264 A0A0A0MRP6;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 ;; ;; 194.27 2.79E-11 56457000 67056 81229 81446 57814 93353 63707 91931 87068 57671 88695 FALSE FALSE TRUE 81972.37586 90728.02495 111576.2647 60972.23243 84058.44754 67042.60001 72289.19084 65714.43648 69245.04071 66584.96881 1.231094304 1.362590185 1.675697483 0.915705654 1.262423773 1.006872891 1.085668314 0.986925993 1.039950036 1 16.02290891 -5.273594546 24.98832606 1.051438787 1.417073623 0.631053029 0.13322121 468.9504786 964056.9992 0.037059924 0.055425798 5.33E-06 5.273594546 0.365634835 LLNILMQLR ddPTM_HeLa_A486_30min_R1 3 LLNILMQLR 9 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370;O60264 A0A0A0MRP6;O60264 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 ;; ;; 202.2 1.53E-11 25114000 57712 60311.2 47757.8 21159.1 61084 49921.8 62790 60564 53302 65121 FALSE FALSE TRUE 53666.68683 55531.92086 66250.89916 49259.45412 53422.27513 43762.95588 47079.27788 46774.8993 57922.26028 48814.27773 1.099405529 1.137616358 1.357203307 1.009119799 1.094398557 0.896519582 0.964457123 0.958221682 1.186584396 1 15.57501556 -5.315677305 23.79108746 1.01006234 1.192029219 0.423168585 0.097394257 169.6068865 74396.37754 0.027665967 0.04103532 4.83E-06 5.315677305 0.181966879 LLNLQDS(ph)DSEECTSR ddPTM_HeLa_A485_30min_R1 2 LLNLQDSDSEECTSR 15 0 Q52LR7 Q52LR7 EPC2 Enhancer of polycomb homolog 2 1 0 LLNLQDS(0.995)DS(0.005)EECTSR;LLNLQDS(0.774)DS(0.226)EECTSR ; 252.37 2.37E-43 460500000 177166 225524 241880 192207 271260 195564 248290 241860 222873 231320 TRUE FALSE FALSE 216575.9655 251897.07 331361.4775 202706.7817 244252.4019 205803.4286 195240.8132 182543.4558 267601.5668 173656.1811 1.247153796 1.450550555 1.908146749 1.167288031 1.406528696 1.185120088 1.124295213 1.051177416 1.54098498 1 17.40587424 -5.375545179 20.7988854 1.216372456 1.528833512 0.325794942 0.213747527 7.280487771 1307.650156 0.059762824 0.088642546 4.21E-06 5.375545179 0.312461056 LLNLQDS(ph)DSEECTSR ddPTM_HeLa_A486_30min_R1 2 LLNLQDSDSEECTSR 15 0 Q52LR7 Q52LR7 EPC2 Enhancer of polycomb homolog 2 1 0 LLNLQDS(0.933)DS(0.067)EECTSR;LLNLQDS(0.935)DS(0.065)EECTSR ; 214.63 1.48E-26 591810000 275691 289180 267400 107337 345490 263189 315720 306550 257680 317910 TRUE FALSE FALSE 256366.4846 266264.3236 370944.4412 249885.9605 302155.4226 230719.4171 236723.5167 236755.2569 280015.9099 238303.2668 1.075799287 1.117333922 1.556606614 1.048604847 1.267944946 0.968175637 0.993370842 0.993504034 1.175040165 1 17.8624392 -6.260490007 24.9997652 1.023571679 1.217856349 0.299607538 0.143029669 112.3548112 2958652.159 0.048769311 0.046134226 5.49E-07 6.260490007 0.19428467 LLNSTNREDEDT(ph)PPNS(ph)PNVDLGK ddPTM_HeLa_A485_30min_R1 1 LLNSTNREDEDTPPNSPNVDLGK 23 1 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 2 0 LLNS(0.009)T(0.009)NREDEDT(0.982)PPNS(1)PNVDLGK 53.262 0.029178 58562000 38832 43387 52249 53515 61932 49312 66980 67722 44132 62016 TRUE FALSE FALSE 47470.04443 48460.73223 71578.07936 56438.38894 55765.83262 51893.90007 52669.17582 51113.07332 52988.8876 46556.55252 1.019621124 1.040900359 1.537443721 1.212254471 1.197808463 1.114642242 1.131294586 1.097870666 1.138161757 1 15.50669661 -6.264989774 2.739320232 1.101505326 1.214393229 0.12815496 0.13599204 0.661807107 9.921513254 0.054154991 0.050108889 5.43E-07 6.264989774 0.112887903 LLNSTNREDEDT(ph)PPNSPNVDLGK ddPTM_HeLa_A486_30min_R1 1 LLNSTNREDEDTPPNSPNVDLGK 23 1 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 LLNSTNREDEDT(0.999)PPNSPNVDLGK 62.364 0.0009446 0 104990 114130 91364 37935 129620 105490 122980 117410 96974 120170 TRUE FALSE FALSE 97630.74317 105085.9231 126742.5876 88314.59713 113361.8509 92475.71634 92209.10325 90678.30604 105379.7844 90078.64982 1.083838883 1.16660189 1.407021396 0.980416528 1.258476356 1.026610818 1.023651036 1.006657029 1.169864164 1 16.45889758 -6.278654522 24.18020854 1.044416061 1.1801725 0.261111406 0.112624452 762.5015871 1070997.884 0.038841978 0.034348762 5.26E-07 6.278654522 0.135756439 LLPDPGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 LLPDPGSPR 9 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 0 LLPDPGS(1)PR;LLPDPGS(1)PR;LLPDPGS(1)PR;LLPDPGS(1)PR ;;; 83.397 0.0059258 357159000 750750 1027760 1044760 685570 1160930 976710 1058400 1131970 888320 971970 TRUE FALSE FALSE 917751.7474 1147947.592 1431260.2 723020.9531 1045343.733 1027849.025 832264.1937 854352.5826 1066597.676 729675.7668 1.257752812 1.573229705 1.961501622 0.990879766 1.432614019 1.408638017 1.140594537 1.17086605 1.461741947 1 19.47689602 -5.272727617 24.97006718 1.248696497 1.595068235 0.360892938 0.223470472 803.0237134 1776321.404 0.062574709 0.093773009 5.34E-06 5.272727617 0.346371738 LLPDPGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LLPDPGSPR 9 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 0 LLPDPGS(1)PR;LLPDPGS(1)PR;LLPDPGS(1)PR;LLPDPGS(1)PR ;;; 94.465 0.0028363 513161000 1029820 1173860 1061590 327053 1313570 989890 1101230 1115110 968710 1087120 TRUE FALSE FALSE 957634.936 1080839.058 1472666.078 761395.9123 1148809.802 867767.4363 825690.6064 861223.7957 1052678.563 814898.076 1.175159157 1.326348767 1.807178249 0.934344963 1.409758884 1.064878494 1.013244025 1.056848483 1.29179169 1 19.6362601 -5.28802561 24.99966695 1.119055407 1.425240932 0.357998486 0.199708837 830.2748595 780725.5123 0.055976291 0.083054139 5.15E-06 5.28802561 0.306185524 LLPEGEETLES(ph)DDEKDEHTSK ddPTM_HeLa_A485_30min_R1 11 LLPEGEETLESDDEKDEHTSK 21 1 Q8N6N3 Q8N6N3 C1orf52 UPF0690 protein C1orf52 1 0 LLPEGEETLES(0.999)DDEKDEHT(0.001)S(0.001)K;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(0.994)DDEKDEHT(0.003)S(0.003)K;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(0.999)DDEKDEHTSK;LLPEGEETLES(0.999)DDEKDEHT(0.001)S(0.001)K ;;;;;;;;;; 402.32 2.92E-175 18309800000 8779840 7202820 4719954 9838460 10110530 9990980 14394290 14912150 7918670 16751600 TRUE FALSE FALSE 10732885.12 8045127.143 6466061.398 10375910.16 9103890.133 10514092.26 11318832.35 11254921.83 9507874.435 12575734.41 0.853459907 0.63973418 0.514169685 0.825073894 0.723925127 0.836061889 0.900053387 0.894971336 0.756049239 1 23.58413932 -6.096418764 1.338768617 0.880909198 0.680212519 0.398355559 0.103660245 0.44443 1.631471253 0.046221344 0.047968759 8.01E-07 6.096418764 -0.200696679 LLPEGEETLES(ph)DDEKDEHTSK ddPTM_HeLa_A486_30min_R1 9 LLPEGEETLESDDEKDEHTSK 21 1 Q8N6N3 Q8N6N3 C1orf52 UPF0690 protein C1orf52 1 0 LLPEGEETLES(0.999)DDEKDEHT(0.001)S(0.001)K;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(0.999)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(1)DDEKDEHTSK;LLPEGEETLES(0.997)DDEKDEHT(0.001)S(0.001)K;LLPEGEETLES(0.998)DDEKDEHT(0.001)S(0.001)K ;;;;;;;; 382.75 8.13E-158 11311570000 8912956 8202665 3660058 790548 7347381 9325120 11712490 11196440 6533453 7938791 TRUE FALSE FALSE 8288203.811 7552655.952 5077330.477 1840435.696 6425803.963 8174681.505 8781901.12 8647255.029 7099777.967 5950866.061 1.392772703 1.269169206 0.853208663 0.309271907 1.079809879 1.373696101 1.475734965 1.453108664 1.193066336 1 22.50466822 -6.126330597 4.965516313 1.335810822 0.941846891 0.221229873 0.298526654 0.338614035 12.27062274 0.108595048 0.10913691 7.48E-07 6.126330597 -0.393963931 LLPHMHNIVEYMLQR ddPTM_HeLa_A485_30min_R1 3 LLPHMHNIVEYMLQR 15 0 Q92973-3;Q92973-2;Q92973 Q92973-3 TNPO1 Transportin-1 0 0 ;; ;; 227.47 2.82E-23 103553300 74274.8 90579.2 106885.2 82445.5 130049 74192.5 112838 97619.3 79023.3 115436 FALSE FALSE TRUE 90796.97301 101171.6495 146426.4833 86949.2889 117100.8649 78077.10458 88729.2395 73678.01361 94882.55147 86659.92964 1.047738827 1.167455939 1.689667692 1.00333902 1.351268867 0.900959704 1.023878508 0.850197016 1.094883781 1 16.40307744 -6.264666427 24.92092926 0.967739529 1.257715207 0.354504848 0.187326746 306.9275746 2370242.384 0.063953953 0.05876575 5.44E-07 6.264666427 0.289975678 LLPHMHNIVEYMLQR ddPTM_HeLa_A486_30min_R1 4 LLPHMHNIVEYMLQR 15 0 Q92973-3;Q92973-2;Q92973 Q92973-3 TNPO1 Transportin-1 0 0 ;;; ;;; 202.89 2.84E-16 114152400 81011.6 103620.8 102786.3 36287.2 125572.6 87588.2 111857.5 111180.8 95642.8 101439 FALSE FALSE TRUE 75333.10518 95409.51043 142587.9081 84478.43545 109822.1136 76782.45842 83869.57039 85867.3589 103933.1949 76038.01414 0.990729519 1.254760681 1.875218727 1.111002653 1.444305389 1.009790422 1.102995276 1.129268825 1.366858355 1 16.21443323 -6.257800149 24.94783384 1.128687671 1.348279609 0.165695007 0.238297463 594.5561627 4075839.963 0.081383588 0.078350419 5.52E-07 6.257800149 0.219591937 LLPNGDYLNVSPSDAVTT(ph)GTPPDFFSAALHPGGEPLR ddPTM_HeLa_A485_30min_R1 1 LLPNGDYLNVSPSDAVTTGTPPDFFSAALHPGGEPLR 37 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 LLPNGDYLNVSPSDAVT(0.06)T(0.784)GT(0.139)PPDFFS(0.016)AALHPGGEPLR 120.35 2.40E-05 38201000 2667.6 6469.9 4877.1 3843.3 6545.1 5083.9 5705 6066.6 5404 6372.3 TRUE FALSE FALSE 3260.998417 7226.498524 6681.342243 4053.249747 5893.446863 5350.085143 4486.080144 4578.756838 6488.533232 4783.802883 0.681674914 1.510617954 1.396659186 0.847286112 1.23195855 1.118374915 0.937764422 0.957137438 1.356354639 1 12.22394223 -5.250268576 24.97050094 1.066327641 1.22774738 0.053025864 0.24532221 1987.209926 4442073.487 0.065082111 0.111428225 5.62E-06 5.250268576 0.161419738 LLPPAS(ph)P ddPTM_HeLa_A486_30min_R1 1 LLPPASP 7 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 0 LLPPAS(1)P 91.906 0.0048562 0 13574 19434 20794 4051.2 20491 18689 18959 18173 14949 16674 TRUE FALSE FALSE 12622.5327 17893.97906 28845.99368 9431.398336 17920.82771 16383.3412 14215.25767 14035.40461 16244.79136 12498.72187 1.009905879 1.431664713 2.30791548 0.754589024 1.433812825 1.310801326 1.137336907 1.122947191 1.299716205 1 13.60949295 -5.300922774 24.99938371 1.174271313 1.56801457 0.245560212 0.344930659 793.321327 502299.1885 0.097128508 0.14406696 5.00E-06 5.300922774 0.393743257 LLPPVGT(ph)GRSPR ddPTM_HeLa_A485_30min_R1 1 LLPPVGTGRSPR 12 1 Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5;Q9NWZ5-4 Q9NWZ5-3 UCKL1 Uridine-cytidine kinase-like 1 1 0 LLPPVGT(0.642)GRS(0.358)PR 95.195 0.0019075 240460000 448100 740790 787830 485170 976710 765540 838450 1118600 599600 668340 TRUE FALSE FALSE 547778.2991 827418.9465 1079281.101 511673.6086 879465.323 805622.4907 659308.308 844261.5961 719934.2201 501735.1379 1.091767863 1.649115009 2.151097302 1.019808201 1.752847781 1.605672854 1.314056478 1.682683815 1.43488898 1 18.93656645 -8.028662806 20.9236163 0.999999987 1.544103762 0.20567409 0.312802354 538.3068092 392961.5666 0.291501418 0.075265342 9.36E-09 8.028662806 0.544103775 LLPPVGTGRS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LLPPVGTGRSPR 12 1 Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5;Q9NWZ5-4 Q9NWZ5-3 UCKL1 Uridine-cytidine kinase-like 1 1 0 LLPPVGT(0.127)GRS(0.873)PR;LLPPVGT(0.003)GRS(0.997)PR ; 139.66 2.35E-06 979660000 488380 855010 867730 578870 1110740 868390 999860 1305050 801640 752360 TRUE FALSE FALSE 597018.4461 954995.9819 1188739.436 610492.2023 1000150.826 913857.5576 786231.7429 984984.4413 962521.7949 564810.4982 1.057024344 1.69082548 2.104669513 1.080879701 1.770772372 1.617989681 1.392027495 1.743920208 1.704149973 1 19.10740738 -10.4672418 6.383337655 0.999767548 1.584937081 0.24148265 0.304372887 0.000971985 8.11E-05 0.284486847 0.068971597 3.41E-11 10.4672418 0.585169533 LLPPVGTGRS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LLPPVGTGRSPR 12 1 Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5;Q9NWZ5-4 Q9NWZ5-3 UCKL1 Uridine-cytidine kinase-like 1 1 0 LLPPVGT(0.036)GRS(0.964)PR 131.03 1.33E-05 469090000 457240 532060 612710 342380 846200 548030 645660 740730 462870 540580 TRUE FALSE FALSE 425189.8372 489897.6279 849967.7209 797077.9429 740061.7055 480419.6306 484109.0389 572081.949 502991.9443 405215.2494 1.049293771 1.208981223 2.097570914 1.967048239 1.826342189 1.185591192 1.194696003 1.41179768 1.241295694 1 18.62832894 -6.272684538 24.56244574 1.231664683 1.651183855 0.311576215 0.312606091 845.1129707 1845948.088 0.121955729 0.108551729 5.34E-07 6.272684538 0.419519173 LLPPWRPWWWNR ddPTM_HeLa_A485_30min_R1 2 LLPPWRPWWWNR 12 1 Q9UHR6 Q9UHR6 ZNHIT2 Zinc finger HIT domain-containing protein 2 0 0 ; ; 146.11 0.00012642 29059000 14429.4 20276.9 18865.3 11247.4 25434 15511.5 25153 22835.9 10641.9 16096.5 FALSE FALSE TRUE 17639.17025 22648.10707 25844.35952 11861.81698 22901.70166 16323.65815 19778.85607 17235.35972 12777.63172 12083.93878 1.459720259 1.874232192 2.138736382 0.981618427 1.895218278 1.350855747 1.636788834 1.426303131 1.057406194 1 13.56080316 -7.541371078 0.53660125 0.957908033 1.714404609 0.356376217 0.306925706 0.92047764 0.635395742 0.311966812 0.174869033 2.87E-08 7.541371078 0.756496575 LLPPWRPWWWNR ddPTM_HeLa_A486_30min_R1 2 LLPPWRPWWWNR 12 1 Q9UHR6 Q9UHR6 ZNHIT2 Zinc finger HIT domain-containing protein 2 0 0 ; ; 139.15 0.00020898 19763000 14319.2 16713.3 13348.4 7410.9 19578.3 12846.2 16485 18065 12434 14582.9 FALSE FALSE TRUE 13315.49802 15388.87724 18517.25796 17252.94973 17122.60705 11261.36645 12360.27864 13951.99386 13511.78913 10931.24692 1.21811337 1.407787908 1.693974905 1.578314885 1.566391024 1.030199623 1.130729068 1.276340564 1.236070252 1 13.41617036 -6.255545972 24.99694517 1.151693006 1.504101342 0.617608317 0.140489319 361.0807921 1531529.419 0.05041981 0.049169532 5.55E-07 6.255545972 0.352408336 LLPS(ph)PLKDAVEVSTWR ddPTM_HeLa_A485_30min_R1 2 LLPSPLKDAVEVSTWR 16 1 H0YBH8;E5RG70;G3XAN1;Q9NV88-3;Q9NV88-2;Q9NV88 H0YBH8 INTS9 Integrator complex subunit 9 1 0 LLPS(1)PLKDAVEVSTWR;LLPS(1)PLKDAVEVSTWR ; 156.39 9.09E-09 91841000 126616 113641 94205 176904 156407 128175 190740 174703 114962 246304 TRUE FALSE FALSE 154781.2924 126930.3264 129055.3497 186567.8176 140834.5699 134886.0448 149986.8408 131856.8153 138033.8189 184904.9457 0.837085735 0.686462582 0.697955099 1.008993117 0.761659291 0.729488572 0.811156458 0.713105941 0.746512314 1 17.49642429 -10.37017798 3.201190274 1.002151789 0.776061129 0.357259361 0.089752076 66071637.91 86093083.82 1319959.544 0.022402068 4.26E-11 10.37017798 -0.22609066 LLPS(ph)PLKDAVEVSTWR ddPTM_HeLa_A486_30min_R1 2 LLPSPLKDAVEVSTWR 16 1 H0YBH8;E5RG70;G3XAN1;Q9NV88-3;Q9NV88-2;Q9NV88 H0YBH8 INTS9 Integrator complex subunit 9 1 0 LLPS(1)PLKDAVEVSTWR;LLPS(1)PLKDAVEVSTWR ; 134.86 4.55E-06 164103000 231130 244940 142149 139138 234080 278640 334980 317590 207750 380830 TRUE FALSE FALSE 214928.9806 225530.0623 197192.8997 323920.2956 204719.5037 244264.2298 251164.4609 245281.6899 225757.9373 285467.6892 0.752901252 0.79003709 0.690771345 1.134700381 0.717137215 0.855663317 0.879834988 0.859227504 0.790835341 1 18.12296794 -13.59000571 0.021433962 2.050602279 1.84E-06 0.161890509 0.117242141 5371.097879 9.274009855 598.7585083 326.2640507 2.57E-14 13.59000571 -2.050600444 LLPS(ph)PVTCTPK ddPTM_HeLa_A485_30min_R1 2 LLPSPVTCTPK 11 0 H0YCH4;Q9BU19-2;Q9BU19;Q9BU19-5 H0YCH4 ZNF692 Zinc finger protein 692 1 0 LLPS(0.496)PVT(0.496)CT(0.007)PK;LLPS(0.935)PVT(0.064)CT(0.001)PK ; 126.76 5.64E-05 269560000 423240 501860 384120 610620 567020 498650 698100 706810 449560 731860 TRUE FALSE FALSE 517388.2778 560548.1614 526221.9726 643976.6244 510565.4979 524758.5429 548945.232 533463.7393 539782.5684 549420.7709 0.941697703 1.020252948 0.957775899 1.172100981 0.92927957 0.955112312 0.999134472 0.970956628 0.982457521 1 19.06755193 LLPS(ph)PVTCTPK ddPTM_HeLa_A486_30min_R1 2 LLPSPVTCTPK 11 0 H0YCH4;Q9BU19-2;Q9BU19;Q9BU19-5 H0YCH4 ZNF692 Zinc finger protein 692 1 0 LLPS(1)PVTCTPK;LLPS(0.982)PVT(0.017)CTPK ; 134.08 2.89E-05 392090000 682540 731190 435420 743520 698760 801580 920580 928780 557460 1326710 TRUE FALSE FALSE 634697.4706 673247.8415 604026.285 1730952.135 611115.0051 702689.2095 690241.1471 717317.0691 605781.0816 994493.1806 0.638211989 0.676975825 0.607370967 1.740536958 0.61449894 0.706580219 0.694063228 0.721289078 0.609135481 1 19.92360195 LLPSAPQTLPDGPLAS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 LLPSAPQTLPDGPLASPAR 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR ;;; 272.64 2.39E-69 1774050000 695485 724886 794662 768957 822320 642616 648821 577958 643288 942150 TRUE FALSE FALSE 850193.2389 809655.112 1088640.542 810963.1738 740446.9335 676262.3801 510195.093 436212.8943 772390.001 707289.344 1.202044462 1.144729691 1.539172832 1.146579092 1.046879809 0.956132573 0.721338583 0.61673896 1.092042468 1 19.431941 -5.992534488 1.703687329 0.834999425 1.280484742 0.554597715 0.162026473 0.258590009 1.523469095 0.063144975 0.0702198 1.02E-06 5.992534488 0.445485317 LLPSAPQTLPDGPLAS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 LLPSAPQTLPDGPLASPAR 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR ;;; 271.58 2.54E-69 2152230000 1113947 1514296 1147020 327323 1336899 1123246 1151813 1126291 1185966 1223197 TRUE FALSE FALSE 1035865.068 1394297.67 1591176.862 762024.486 1169212.661 984671.3288 863617.2048 869859.1261 1288766.488 916900.5095 1.12974642 1.52066408 1.735386605 0.831087428 1.275179422 1.073912948 0.941887583 0.948695215 1.405568515 1 19.80640567 -5.263986071 24.9990995 1.069527858 1.467805535 0.427309224 0.208924241 208.4136515 2045857.782 0.057572362 0.090007606 5.45E-06 5.263986071 0.398277678 LLPSVWS(ph)ESEDGAGSPPPYR ddPTM_HeLa_A485_30min_R1 1 LLPSVWSESEDGAGSPPPYR 20 0 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;Q9UIS9-10;K7EMA9;Q9UIS9-8;Q9UIS9-2;Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12;K7EN65 K7EPZ6;Q9UIS9-6;K7EN65 MBD1 Methyl-CpG-binding domain protein 1 1 0 LLPS(0.001)VWS(0.931)ES(0.068)EDGAGSPPPYR 116.13 1.51E-05 57410000 9413.1 15565 17368 11692 14030 11277 22137 22510 18019 16766 TRUE FALSE FALSE 11507.01162 17385.19135 23793.14594 12330.70435 12633.12394 11867.44628 17407.24911 16989.38721 21635.24802 12586.54476 0.914231177 1.381252098 1.890363591 0.9796735 1.003700712 0.942867682 1.383004585 1.34980549 1.718918769 1 13.61959467 -10.1356227 13.90217882 1.000000857 1.283003543 0.067738357 0.316974518 0 0 0.320261962 0.077674935 7.32E-11 10.1356227 0.283002686 LLPSVWSESEDGAGS(ph)PPPYR ddPTM_HeLa_A486_30min_R1 1 LLPSVWSESEDGAGSPPPYR 20 0 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;Q9UIS9-10;K7EMA9;Q9UIS9-8;Q9UIS9-2;Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12;K7EN65 K7EPZ6;Q9UIS9-6;K7EN65 MBD1 Methyl-CpG-binding domain protein 1 1 0 LLPS(0.003)VWS(0.05)ES(0.05)EDGAGS(0.897)PPPY(0.001)R 50.653 0.036668 30994000 13381 21000 28028 4765.7 23334 13499 15738 16840 12813 14885 TRUE FALSE FALSE 12443.061 19335.88352 38881.19222 11094.79045 20407.23214 11833.63063 11800.18594 13005.89961 13923.64116 11157.69911 1.115199547 1.73296334 3.484696246 0.99436186 1.828982116 1.06057983 1.057582376 1.165643515 1.247895378 1 13.44575193 LLPVEPCDLTEGFDPS(ph)VPPRTPQEYLRR ddPTM_HeLa_A485_30min_R1 1 LLPVEPCDLTEGFDPSVPPRTPQEYLRR 28 2 G5EA29;H0YEL0;A0A3B3IU42;O14893-3;O14893-2;O14893 G5EA29 GEMIN2 Gem-associated protein 2 1 0 LLPVEPCDLTEGFDPS(0.444)VPPRT(0.279)PQEY(0.277)LRR 77.276 0.0025235 37712000 6039.3 8669.8 6932.3 6129.1 10155 8169.8 8903.7 12311 8045.3 9813.4 TRUE FALSE FALSE 7382.72145 9683.657693 9496.846247 6463.917213 9143.932544 8597.558095 7001.351758 9291.707947 9659.917914 7367.099982 1.002120436 1.314446351 1.289088823 0.877403215 1.241184803 1.167020689 0.95035384 1.261243633 1.311223947 1 12.84688111 -11.36907139 2.176782637 0.000237454 1.157147015 0.088462662 0.151307845 4959400.203 517850.9155 25134662.64 0.040060399 4.27E-12 11.36907139 1.156909561 LLPYPTLASPAS(ph)D ddPTM_HeLa_A485_30min_R1 2 LLPYPTLASPASD 13 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 LLPYPTLASPAS(1)D;LLPYPTLASPAS(1)D ; 228.06 1.04E-27 110604000 154912 192142 212900 217650 226540 176095 204411 182757 176498 232930 TRUE FALSE FALSE 189371.64 214611.3355 291660.5695 229539.6684 203984.8822 185315.0619 160736.92 137935.5592 211919.5297 174864.8378 1.082960087 1.227298399 1.667920053 1.312669095 1.166528873 1.059761724 0.91920664 0.788812439 1.211904762 1 17.41588069 -6.108274799 2.061450242 0.96900361 1.338387553 0.453026907 0.169174916 0.295773174 2.485336397 0.0668802 0.068158656 7.79E-07 6.108274799 0.369383943 LLPYPTLASPAS(ph)D ddPTM_HeLa_A486_30min_R1 1 LLPYPTLASPASD 13 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 LLPYPTLASPAS(1)D 157.68 1.42E-08 62251000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LLQDFFNGK ddPTM_HeLa_A485_30min_R1 2 LLQDFFNGK 9 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652;P17066 P11142;P17066 HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 0 0 ; ; 209.58 3.53E-12 112082000 218410 270246 231339 242198 317330 281410 331590 347610 250157 324920 FALSE FALSE TRUE 266994.551 301848.9189 316920.9229 255428.6635 285735.511 296144.1925 260743.0877 262358.1025 300361.2153 243923.4237 1.094583484 1.237474099 1.299263999 1.047167425 1.17141481 1.214086732 1.06895469 1.075575681 1.231375039 1 17.89606878 -13.99999999 0.143074823 0.446233182 1.214414938 0.250845031 0.081659524 190.6485436 1.653588231 30.07636243 0.47801678 1.00E-14 13.99999999 0.768181755 LLQDFFNGK ddPTM_HeLa_A486_30min_R1 3 LLQDFFNGK 9 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652;P17066 P11142;P17066 HSPA8;HSPA2;HSPA6 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6 0 0 ;; ;; 224.36 5.77E-17 134240000 336262 335728 248321 145954 417090 329586 380165 383549 274459 412591 FALSE FALSE TRUE 312691.7703 309123.6906 344477.5415 339788.2881 364774.683 288925.0303 285043.696 296223.2655 298249.3271 309275.5281 1.011045951 0.999509054 1.113820882 1.098658824 1.179448905 0.934199457 0.921649695 0.957797299 0.964348291 1 18.23853316 -6.288872092 24.86635866 0.950839434 1.078857766 0.595498654 0.051385153 521.5232038 472732.3524 0.0195431 0.017239185 5.14E-07 6.288872092 0.128018332 LLQDFFNGR ddPTM_HeLa_A485_30min_R1 3 LLQDFFNGR 9 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ;; ;; 236.44 1.39E-23 172747000 231409 314306 309497 221567 368878 296305 331468 375651 284813 297706 FALSE FALSE TRUE 282885.1337 351061.3526 423992.8195 233670.6442 332151.2111 311819.0716 260647.154 283522.0033 341972.3566 223493.3731 1.265742826 1.570790882 1.897115846 1.045537239 1.486179239 1.395205 1.166241085 1.268592439 1.530123028 1 17.76987253 -5.270664397 24.99600034 1.291327173 1.577173965 0.295380495 0.216014353 858.0130353 2324860.747 0.059886735 0.090214362 5.36E-06 5.270664397 0.285846793 LLQDFFNGR ddPTM_HeLa_A486_30min_R1 2 LLQDFFNGR 9 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 278.48 1.91E-42 104847000 173554 188984 162547 56198 213180 158206 186657 188677 156578 185065 FALSE FALSE TRUE 161388.7608 174008.2196 225489.5516 130831.7841 186440.9766 138688.1522 139953.4443 145719.3659 170150.3071 138723.5194 1.163384273 1.254352689 1.625460142 0.943111771 1.343975249 0.999745053 1.008866016 1.05043014 1.226542607 1 17.08185288 -5.28379118 24.99941656 1.088376214 1.33839449 0.372651265 0.157812727 859.3815575 961175.168 0.044065524 0.065420254 5.20E-06 5.28379118 0.250018276 LLQDHPWLLSQNLVVKPDQLIK ddPTM_HeLa_A485_30min_R1 1 LLQDHPWLLSQNLVVKPDQLIK 22 1 P53396;P53396-3;P53396-2;K7ESG8 P53396 ACLY ATP-citrate synthase 0 0 162.86 3.29E-17 7235600 8958.5 10693 8268.7 11268 13399 12144 14779 16075 9122.3 19599 FALSE FALSE TRUE 10951.28742 11943.45333 11327.63622 11883.54231 12064.94851 12779.84106 11621.34592 12132.58105 10953.06194 14713.32999 0.744310596 0.811743728 0.769889361 0.80767184 0.820001218 0.868589304 0.78985151 0.824597902 0.744431202 1 13.84483618 -11.34043101 2.344782363 2.250300025 0.801047201 0.735987145 0.036269406 1394000.608 252230.3105 9340770.652 0.009007882 4.57E-12 11.34043101 -1.449252824 LLQDS(ph)VDFSLADAINTEFK ddPTM_HeLa_A486_30min_R1 1 LLQDSVDFSLADAINTEFK 19 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 LLQDS(0.999)VDFS(0.001)LADAINTEFK 179.78 3.78E-18 37463000 7791 9162.9 5282 7109.5 9356 10675 11517 10778 6588.6 10306 TRUE FALSE FALSE 7244.891133 8436.798433 7327.331857 16551.27529 8182.483239 9358.027035 8635.324786 8324.084682 7159.705153 7725.310519 0.937812288 1.092098293 0.948483797 2.142473788 1.059178556 1.211346393 1.117796465 1.077508103 0.92678542 1 12.91537721 -7.093258547 1.45245583 0.976927994 1.251275855 0.09558851 0.324542369 1.120016381 4.420389677 0.249507738 0.109401218 8.07E-08 7.093258547 0.274347862 LLQDSS(ph)SPVDLAK ddPTM_HeLa_A485_30min_R1 2 LLQDSSSPVDLAK 13 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 LLQDS(0.082)S(0.597)S(0.321)PVDLAK;LLQDS(0.125)S(0.438)S(0.438)PVDLAK ; 141.46 1.16E-07 194682000 561890 593110 482830 734140 757750 731680 823720 848830 502260 730390 TRUE FALSE FALSE 686880.492 662469.0551 661448.9092 774244.2093 682305.7494 769989.6334 647725.4928 640653.1116 603058.975 548317.2148 1.252706414 1.208185768 1.206325265 1.412037026 1.244363173 1.404277693 1.181297022 1.168398683 1.099835932 1 19.06465124 -7.636658347 1.247637829 1.010932792 1.28162439 0.624927073 0.072405779 0.294061723 0.866541743 0.068933465 0.022744064 2.31E-08 7.636658347 0.270691598 LLQDSS(ph)SPVDLAK ddPTM_HeLa_A486_30min_R1 2 LLQDSSSPVDLAK 13 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 LLQDS(0.256)S(0.596)S(0.148)PVDLAK;LLQDS(0.008)S(0.702)S(0.29)PVDLAK ; 158.65 8.04E-09 62321000 534530 561400 343940 172712 513010 509700 491390 555690 380550 562830 TRUE FALSE FALSE 497062.2073 516912.6194 477122.779 402082.2644 448663.5022 446818.3962 368439.0246 429171.5176 413536.3804 421893.7046 1.178169292 1.225220035 1.130907558 0.953041631 1.063451522 1.059078131 0.873298228 1.017250348 0.980190925 1 18.68652003 -5.085259914 3.769046928 0.994173702 1.199135032 0.73135546 0.052595371 0.11881653 3.137523707 0.014926692 0.028530452 8.22E-06 5.085259914 0.20496133 LLQDSSS(ph)PVDLAK ddPTM_HeLa_A485_30min_R1 3 LLQDSSSPVDLAK 13 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 LLQDSS(0.077)S(0.923)PVDLAK;LLQDS(0.001)S(0.122)S(0.878)PVDLAK;LLQDS(0.005)S(0.027)S(0.968)PVDLAK ;; 199.33 2.05E-21 672620000 1795530 1969720 1549560 2279950 2427680 2284770 2773350 2787270 1470980 2457790 TRUE FALSE FALSE 2194939.454 2200061.62 2122806.727 2404497.895 2185971.655 2404397.024 2180801.116 2103687.662 1766192.193 1845108.185 1.189599326 1.192375405 1.150505289 1.303174478 1.184739016 1.303119808 1.18193672 1.14014326 0.957229613 1 20.81527398 -7.595275067 2.647996483 0.975527152 1.21686717 0.77657145 0.049844837 0.126078136 1.663672913 0.04195089 0.013318877 2.54E-08 7.595275067 0.241340018 LLQDSSS(ph)PVDLAK ddPTM_HeLa_A486_30min_R1 3 LLQDSSSPVDLAK 13 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 LLQDSS(0.018)S(0.982)PVDLAK;LLQDSS(0.052)S(0.948)PVDLAK;LLQDS(0.039)S(0.376)S(0.585)PVDLAK ;; 261.44 2.07E-41 523141000 2538620 2396140 1445000 916780 2141110 2174500 2607470 2594940 1721130 2859640 TRUE FALSE FALSE 2360675.847 2206261.14 2004542.698 2134310.171 1872552.019 1906232.299 1955053.427 2004128.809 1870318.934 2143567.531 1.101283637 1.029247322 0.935143246 0.995681331 0.873568008 0.889280264 0.912055906 0.934950161 0.872526248 1 21.03158244 -4.268711639 0.917876282 0.913427536 1.209692562 0.657155381 0.04180707 1.202773043 0.806434992 0.013991182 0.35754615 5.39E-05 4.268711639 0.296265026 LLQDYFNGR ddPTM_HeLa_A485_30min_R1 1 LLQDYFNGR 9 0 Q53FA3;P34931 Q53FA3 HSPA1L Heat shock 70 kDa protein 1-like 0 0 127.12 0.012152 214780000 118360 173730 167350 118250 191400 158860 180340 208080 136290 164420 FALSE FALSE TRUE 144688.7737 194046.2122 229259.729 124709.6981 172343.544 167177.664 141808.8858 157048.0537 163642.1529 123433.1199 1.172203812 1.572075731 1.857359914 1.010342266 1.396250407 1.354398755 1.148872246 1.272333178 1.325755624 1 16.91337003 -7.766147317 0.190436945 0.882569048 1.577562385 0.22283858 0.217766731 5.382582634 0.947497219 1.523003708 1.19660835 1.71E-08 7.766147317 0.694993337 LLQDYFNGR ddPTM_HeLa_A486_30min_R1 1 LLQDYFNGR 9 0 Q53FA3;P34931 Q53FA3 HSPA1L Heat shock 70 kDa protein 1-like 0 0 132.57 0.009572 137020000 101570 116880 101570 40253 131240 107050 112840 117620 94741 119410 FALSE FALSE TRUE 94450.46751 107618.0031 140900.6241 93711.01827 114778.6554 93843.2594 84606.2385 90840.49363 102953.2262 89508.95877 1.055206862 1.20231544 1.57415108 1.046945686 1.28231472 1.048423093 0.945226485 1.014875995 1.150200243 1 16.44974447 -6.313159546 6.166288794 1.025735187 1.239178211 0.323604547 0.144689837 0.269832519 24.1934 0.051925455 0.046032591 4.86E-07 6.313159546 0.213443024 LLQEHSGIFGFSVSHTTR ddPTM_HeLa_A486_30min_R1 1 LLQEHSGIFGFSVSHTTR 18 0 B1ANH0;B1ANG9;B1ANH6;B1ANH2;Q16774;Q16774-2;Q16774-3 B1ANH0 GUK1 Guanylate kinase 0 0 153.06 2.25E-10 12013000 10184 9467.9 12043 3880.1 14332 11754 9575.6 10743 8788.3 9185.7 FALSE FALSE TRUE 9470.15419 8717.629123 16706.37212 9033.068889 12534.34692 10303.91099 7179.6836 8297.053418 9550.07692 6885.540931 1.375368222 1.266077598 2.4262977 1.311889506 1.820386669 1.496456283 1.04271889 1.204996601 1.38697555 1 12.74935428 -6.598201994 5.06809222 1.179050524 1.646304883 0.326447508 0.326274352 0.259203218 12.11611899 0.126618219 0.097388928 2.52E-07 6.598201994 0.46725436 LLQIS(ph)PSSGTTVTSVVGFSCDGMRPEAIR ddPTM_HeLa_A485_30min_R1 1 LLQISPSSGTTVTSVVGFSCDGMRPEAIR 29 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 LLQIS(0.977)PS(0.019)S(0.003)GT(0.001)TVTSVVGFSCDGMRPEAIR 107.83 0.00012277 213570000 38748 50573 49351 44731 63445 45724 50900 55169 42687 56729 TRUE FALSE FALSE 47367.35892 56487.07242 67607.98857 47174.54127 57128.19303 48118.03794 40024.79919 41638.71625 51253.88935 42587.50432 1.112236081 1.326376676 1.587507642 1.107708517 1.341430871 1.129862825 0.939824952 0.977721445 1.203495959 1 15.37814257 -6.437446249 3.837641484 1.02808418 1.301948454 0.438795708 0.141522786 0.225846673 6.179486984 0.053606712 0.045667685 3.65E-07 6.437446249 0.273864274 LLQIS(ph)PSSGTTVTSVVGFSCDGMRPEAIR ddPTM_HeLa_A486_30min_R1 1 LLQISPSSGTTVTSVVGFSCDGMRPEAIR 29 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 LLQIS(0.266)PS(0.266)S(0.108)GT(0.108)T(0.108)VT(0.108)S(0.037)VVGFS(0.002)CDGMRPEAIR 53.553 0.014062 152950000 65138 73022 58078 30917 79693 58149 72570 75353 56493 78235 TRUE FALSE FALSE 60572.16257 67235.47078 80567.35698 71976.33846 69697.16083 50975.1676 54412.21843 58196.76684 61389.85873 58644.44678 1.032871242 1.146493393 1.373827556 1.227334256 1.188469918 0.869224119 0.927832411 0.992366201 1.046814526 1 15.83970688 -6.215061493 9.550534787 0.964377279 1.20330325 0.610998507 0.090212506 0.379018528 76.19093332 0.032035337 0.031973434 6.09E-07 6.215061493 0.23892597 LLQLTLEHDPHDTLGHGLGPET(ph)SPLSSPAYTPSGEAGSSAR ddPTM_HeLa_A486_30min_R1 1 LLQLTLEHDPHDTLGHGLGPETSPLSSPAYTPSGEAGSSAR 41 0 E9PC47;P53667-3;P53667-4;P53667-2;P53667 E9PC47 LIMK1 LIM domain kinase 1 1 0 LLQLTLEHDPHDT(0.003)LGHGLGPET(0.493)S(0.493)PLS(0.009)S(0.001)PAYTPSGEAGSSAR 88.033 0.00012038 163150000 18409 21404 20069 2992 20808 19861 19747 23408 16758 18151 TRUE FALSE FALSE 17118.62416 19707.86909 27840.25427 6965.527207 18198.06661 17410.75175 14806.09174 18078.50939 18210.59693 13605.87146 1.258179178 1.448482675 2.046194127 0.511950097 1.337515695 1.279649878 1.088213407 1.328728516 1.338436644 1 13.73194174 -5.246779418 24.99701094 1.153649554 1.570704968 0.327394287 0.298806117 1053.198207 1795827.697 0.08046622 0.138598389 5.67E-06 5.246779418 0.417055414 LLQLVEDRGS(ph)GR ddPTM_HeLa_A485_30min_R1 4 LLQLVEDRGSGR 12 1 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR ;;; 192.78 1.01E-13 566341000 242400 359137 361316 242872 442369 344845 378936 446173 316866 318936 TRUE FALSE FALSE 296321.0437 401134.9481 494981.824 256139.4824 398325.1891 362900.551 297973.228 336748.3722 380458.0997 239431.1248 1.237604526 1.675366761 2.067324474 1.069783566 1.663631616 1.515678262 1.244504983 1.406451949 1.58900853 1 17.86925118 -12.19622193 0.194321787 1.53E-10 1.607712004 0.23480644 0.267817766 90.9778643 1.681419077 37.87595068 0.738521535 6.36E-13 12.19622193 1.607712004 LLQLVEDRGS(ph)GR ddPTM_HeLa_A486_30min_R1 4 LLQLVEDRGSGR 12 1 P17844;P17844-2;J3KTA4 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR ;;; 181.51 3.73E-13 461828000 324187 368932 341237 119055 442469 318389 342522 373581 281875 337889 TRUE FALSE FALSE 301463.1654 339696.4847 473373.105 277166.0567 386970.4122 279109.4023 256819.3728 288524.7615 306308.152 253279.3951 1.190239598 1.341192735 1.868975977 1.094309533 1.527840083 1.101982268 1.013976572 1.139156075 1.209368618 1 17.95037019 -6.27688163 23.4937391 1.096661383 1.40956399 0.372889704 0.201972535 412.6690449 627829.0868 0.070530773 0.062476935 5.29E-07 6.27688163 0.312902607 LLQNGNS(ph)PAEVAK ddPTM_HeLa_A485_30min_R1 1 LLQNGNSPAEVAK 13 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 LLQNGNS(1)PAEVAK 154.69 1.01E-06 0 194230 229010 175430 243060 284860 220730 295350 300150 148780 209050 TRUE FALSE FALSE 237435.7934 255790.7274 240328.8573 256337.7523 256498.3382 232287.0815 232246.0597 226537.7419 178638.7813 156937.6823 1.512930419 1.62988725 1.531364894 1.633372869 1.634396115 1.480123053 1.479861664 1.443488515 1.138278447 1 17.25983227 -7.756850133 1.147922407 0.988066086 1.57784193 0.925061389 0.055568569 0.108673841 0.295418855 0.05193851 0.01713868 1.75E-08 7.756850133 0.589775843 LLQNGNS(ph)PAEVAK ddPTM_HeLa_A486_30min_R1 2 LLQNGNSPAEVAK 13 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 LLQNGNS(1)PAEVAK;LLQNGNS(1)PAEVAK ; 166.92 6.29E-12 57625000 288831 339710 218473 121796 347460 251525 315317 323395 213859 342945 TRUE FALSE FALSE 268585.4384 312790.1424 303071.5965 283547.2432 303878.3269 220494.4028 236421.3515 249765.0182 232396.4703 257069.3398 1.044797636 1.21675398 1.178948827 1.102999072 1.182087008 0.857723457 0.919679304 0.971586181 0.904022512 1 17.97179803 -6.255552597 24.97537945 0.928143739 1.148636754 0.781142447 0.05675045 209.2071263 887587.3813 0.018433432 0.017971847 5.55E-07 6.255552597 0.220493016 LLQPGGGPDVGTGAPRPGCS(ph)PR ddPTM_HeLa_A485_30min_R1 3 LLQPGGGPDVGTGAPRPGCSPR 22 1 Q9NXH8 Q9NXH8 TOR4A Torsin-4A 1 0 LLQPGGGPDVGTGAPRPGCS(1)PR;LLQPGGGPDVGTGAPRPGCS(1)PR;LLQPGGGPDVGT(0.022)GAPRPGCS(0.978)PR ;; 150.11 6.15E-10 1608850000 895320 1006810 971040 817500 1030190 809970 980750 1050190 847340 1197440 TRUE FALSE FALSE 1094480.845 1124547.671 1330268.104 862157.955 927620.6664 852378.7767 771204.7505 792629.2559 1017393.366 898940.2453 1.217523468 1.250970437 1.479818165 0.959082608 1.031904703 0.948204045 0.857904354 0.881737424 1.131769738 1 19.77786569 -5.279569055 24.89202651 0.964648273 1.309590657 0.725869672 0.096520846 380.5375012 522476.7853 0.027677991 0.04114648 5.25E-06 5.279569055 0.344942384 LLQPGGGPDVGTGAPRPGCS(ph)PR ddPTM_HeLa_A486_30min_R1 2 LLQPGGGPDVGTGAPRPGCSPR 22 1 Q9NXH8 Q9NXH8 TOR4A Torsin-4A 1 0 LLQPGGGPDVGT(0.016)GAPRPGCS(0.984)PR;LLQPGGGPDVGTGAPRPGCS(1)PR ; 108.49 7.75E-05 1387930000 621000 662990 551070 166729 671770 524570 541520 591300 501010 552460 TRUE FALSE FALSE 577471.1068 610452.2578 764459.0622 388153.538 587510.3426 459853.8868 406025.9684 456673.898 544437.9502 414120.4201 1.394452142 1.474093593 1.845982533 0.937296301 1.418694452 1.110435189 0.98045387 1.10275629 1.31468511 1 18.65969082 -5.268687087 24.97139086 1.13355431 1.561767844 0.574207465 0.176592586 399.9434056 1377972.777 0.049296667 0.07486543 5.39E-06 5.268687087 0.428213534 LLQS(ph)PLCAGCSSDK ddPTM_HeLa_A485_30min_R1 1 LLQSPLCAGCSSDK 14 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 LLQS(1)PLCAGCSSDK 141.85 1.76E-05 0 74037 61241 61300 122810 90345 70116 92736 73007 72218 130860 TRUE FALSE FALSE 90506.27523 68402.60222 83977.42091 129518.7993 81349.93458 73787.16534 72922.19602 55101.91878 86711.49018 98239.0103 0.921286513 0.696287575 0.854827636 1.318404969 0.828081781 0.751098419 0.742293675 0.560896518 0.882658426 1 16.58400841 -5.990886353 24.99386091 0.76073392 0.941876338 0.143997706 0.179602557 366.9225717 1006265.084 0.057814918 0.065469981 1.02E-06 5.990886353 0.181142418 LLQTCFS(ph)SPADDSMDR ddPTM_HeLa_A485_30min_R1 1 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 0 LLQT(0.012)CFS(0.494)S(0.494)PADDSMDR 81.311 0.0034763 56323000 66793 70948 90411 67810 110880 81853 99887 103610 78651 95054 TRUE FALSE FALSE 81650.87242 79244.75143 123857.7912 71514.2886 99840.39788 86138.69651 78545.32645 78199.48505 94435.53427 71358.78714 1.144230104 1.110511468 1.735704826 1.002179149 1.399132495 1.207121084 1.100709942 1.095863427 1.323390406 1 16.12280347 -6.519673683 14.2766849 1.14024735 1.28149771 0.107360427 0.200744474 1.35769515 6032.242268 0.073055435 0.058787848 3.02E-07 6.519673683 0.141250361 LLQTCFS(ph)SPADDSMDR ddPTM_HeLa_A486_30min_R1 4 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 0 LLQT(0.002)CFS(0.646)S(0.353)PADDSMDR;LLQT(0.023)CFS(0.626)S(0.351)PADDSMDR;LLQT(0.002)CFS(0.626)S(0.371)PADDSMDR;LLQT(0.041)CFS(0.618)S(0.341)PADDSMDR ;;; 170.91 3.39E-12 328638000 277742 355263 327550 135017 415210 321110 392833 396379 305333 364244 TRUE FALSE FALSE 258273.7201 327110.666 454386.1321 314326.3994 363130.4901 281494.713 294542.0284 306132.1546 331799.5103 273034.9316 0.945936546 1.198054271 1.664205124 1.151231447 1.329978139 1.030984246 1.078770496 1.121219739 1.215227328 1 18.05872601 -6.260167239 24.99778529 1.096162227 1.27120597 0.183162067 0.17664936 209.3505821 4113814.11 0.061877042 0.058579049 5.49E-07 6.260167239 0.175043743 LLQTCFSSPADDS(ph)MDR ddPTM_HeLa_A486_30min_R1 2 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 0 LLQTCFSSPADDS(1)MDR;LLQTCFSSPADDS(1)MDR ; 110.37 0.00019464 259516000 126691 159521 146590 55551 207357 148699 158212 182754 128830 158153 TRUE FALSE FALSE 117810.6151 146879.975 203353.5738 129325.5354 181348.3515 130354.0292 118625.6842 141144.9037 139997.0881 118550.4594 0.993759246 1.238965886 1.715333495 1.090890209 1.529714456 1.099565787 1.000634538 1.19058926 1.180907175 1 16.85514173 -6.330642373 23.7436554 1.100393898 1.31951008 0.230576462 0.200094784 160.9852931 55233.14788 0.070233601 0.061940209 4.67E-07 6.330642373 0.219116182 LLRDDEAHLQEDQGEEECFHDCS(ph)ASFEEEPGADKVENK ddPTM_HeLa_A486_30min_R1 3 LLRDDEAHLQEDQGEEECFHDCSASFEEEPGADKVENK 38 2 Q99614 Q99614 TTC1 Tetratricopeptide repeat protein 1 1 0 LLRDDEAHLQEDQGEEECFHDCS(0.5)AS(0.5)FEEEPGADKVENK;LLRDDEAHLQEDQGEEECFHDCS(0.963)AS(0.037)FEEEPGADKVENK;LLRDDEAHLQEDQGEEECFHDCS(0.856)AS(0.144)FEEEPGADKVENK ;; 320.72 8.24E-112 692600000 157296 231325 107041 146190 235575 273152 399030 390492 157407 327306 TRUE FALSE FALSE 146270.3627 212993.9645 148490.1419 340337.708 206026.9869 239453.2834 299188.4735 301585.496 171051.1655 245346.4472 0.59617885 0.868135516 0.605226379 1.387171944 0.839739027 0.975980236 1.219453051 1.229223 0.697182158 1 17.90446085 -5.233689146 24.99718088 1.0546102 0.70767574 0.403866449 0.200006091 751.7214297 677143.5866 0.052642488 0.091153671 5.84E-06 5.233689146 -0.34693446 LLRDDEAHLQEDQGEEECFHDCSAS(ph)FEEEPGADKVENK ddPTM_HeLa_A485_30min_R1 1 LLRDDEAHLQEDQGEEECFHDCSASFEEEPGADKVENK 38 2 Q99614 Q99614 TTC1 Tetratricopeptide repeat protein 1 1 0 LLRDDEAHLQEDQGEEECFHDCS(0.447)AS(0.553)FEEEPGADKVENK 130.49 6.99E-07 85729000 61536 38662 38533 123690 84245 51679 95587 92245 54789 147030 TRUE FALSE FALSE 75224.4709 43183.18459 52787.96019 130446.8715 75857.272 54384.83253 75164.05658 69621.76912 65784.64975 110378.1269 0.681516103 0.391229547 0.478246566 1.18181813 0.687249133 0.492713856 0.680968763 0.630756936 0.595993532 1 16.75209478 -10.98583259 2.847501519 1.321508121 0.647190019 0.214813923 0.202623517 87707955.13 20630923.68 185026916.6 0.053916358 1.03E-11 10.98583259 -0.674318102 LLRLPGSGAVQAAS(ph)PER ddPTM_HeLa_A485_30min_R1 2 LLRLPGSGAVQAASPER 17 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LLRLPGSGAVQAAS(1)PER;LLRLPGSGAVQAAS(1)PER ; 125.04 9.32E-06 923070000 168242 375820 313450 151468 353830 395620 381510 609510 257030 150033 TRUE FALSE FALSE 205666.8525 419768.8798 429408.1987 159742.3133 318601.4428 416334.0515 299997.2718 460026.7168 308613.5634 112632.5343 1.825998623 3.726888351 3.812470363 1.418260846 2.828680407 3.69639247 2.663504589 4.084314713 2.740003725 1 16.78126409 -8.032602946 23.61002113 0.999999972 3.035626422 0.342063987 0.829340738 2554.817361 1850115.87 0.793781527 0.204953509 9.28E-09 8.032602946 2.03562645 LLRLPGSGAVQAAS(ph)PER ddPTM_HeLa_A486_30min_R1 1 LLRLPGSGAVQAASPER 17 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LLRLPGSGAVQAAS(1)PER 124.66 9.54E-06 302380000 105780 78624 87709 51587 106240 73831 103310 96176 55018 131880 TRUE FALSE FALSE 98365.36825 72393.5479 121672.2737 120097.1431 92914.38855 64722.48188 77460.7453 74278.82431 59787.00454 98856.38961 0.995032983 0.732310255 1.230798274 1.21486475 0.939892595 0.654712175 0.783568423 0.751381116 0.604786446 1 16.5930466 -6.070196834 5.363999876 0.747290221 1.039555137 0.412267118 0.160703807 0.223167924 12.03132812 0.055176737 0.055951832 8.51E-07 6.070196834 0.292264916 LLRPLS(ph)PVT(ph)PPPPNSGSK ddPTM_HeLa_A485_30min_R1 1 LLRPLSPVTPPPPNSGSK 18 1 E7EWN3;Q9C0A6-2;Q9C0A6-3;Q9C0A6;H7C1F2;H0Y3R4 E7EWN3 SETD5 SET domain-containing protein 5 2 0 LLRPLS(1)PVT(0.998)PPPPNS(0.001)GS(0.001)K 61.524 0.01737 138300000 125710 136190 111120 161970 138550 122170 161910 152310 128710 183650 TRUE FALSE FALSE 153673.7558 152116.2358 152227.9121 170818.011 124755.4755 128566.6323 127316.6058 114955.7337 154540.9164 137869.4348 1.114632522 1.103335456 1.104145471 1.238983907 0.904881315 0.932524547 0.923457806 0.833801443 1.120922245 1 17.07294313 -5.774003748 24.99995678 0.941827268 1.135055221 0.574168096 0.07880197 154.7566525 307926.0151 0.023691726 0.027040614 1.68E-06 5.774003748 0.193227953 LLRPNS(ph)LR ddPTM_HeLa_A485_30min_R1 4 LLRPNSLR 8 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LLRPNS(1)LR;LLRPNS(1)LR;LLRPNS(1)LR;LLRPNS(1)LR ;;; 154.84 6.98E-05 1126560000 549067 711766 712232 460490 794475 663610 740265 845989 634965 687424 TRUE FALSE FALSE 671205.0599 795000.8422 975716.2552 485645.4027 715374.2794 698355.5935 582101.3353 638508.8713 762396.6513 516061.8479 1.300629106 1.54051466 1.890696356 0.941060465 1.38621811 1.353240113 1.127968164 1.237271993 1.477335816 1 18.97718445 -5.263682275 24.99999396 1.23641594 1.573603491 0.387664231 0.206198415 215.2587768 2399350.905 0.056684527 0.08887818 5.45E-06 5.263682275 0.337187551 LLRPNS(ph)LR ddPTM_HeLa_A486_30min_R1 5 LLRPNSLR 8 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LLRPNS(1)LR;LLRPNS(1)LR;LLRPNS(1)LR;LLRPNS(1)LR;LLRPNS(1)LR ;;;; 143.4 0.00017986 1299890000 792367 877190 777627 252252 921970 710119 835350 909560 702605 728351 TRUE FALSE FALSE 736826.1651 807678.2697 1078745 587255.4041 806327.9256 622511.7377 626336.5946 702473.0436 763507.3671 545967.1688 1.349579622 1.479353184 1.975842251 1.075624026 1.476879878 1.140199948 1.147205602 1.286658033 1.39844923 1 19.05845467 -5.287866294 24.99949442 1.2344164 1.589368002 0.431650432 0.201006782 718.7904565 679964.2742 0.055894681 0.082932433 5.15E-06 5.287866294 0.354951602 LLRQS(ph)PPLPGR ddPTM_HeLa_A485_30min_R1 2 LLRQSPPLPGR 11 1 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LLRQS(1)PPLPGR;LLRQS(1)PPLPGR ; 114.7 0.00018626 531690000 461470 528420 282890 375710 197602 400310 392430 350340 331420 680850 TRUE FALSE FALSE 564122.4094 590214.1224 387542.783 396234.086 177928.0511 421269.6126 308584.1246 264418.5657 397932.954 511126.6251 1.103684257 1.154731711 0.758212865 0.775217072 0.348109534 0.824198138 0.603733223 0.517324969 0.778540844 1 18.96332122 -4.849306387 3.039265723 0.663608072 1.140644008 0.49542492 0.171401164 0.180813273 3.304817576 0.044315007 0.115262175 1.41E-05 4.849306387 0.477035937 LLRQS(ph)PPLPGR ddPTM_HeLa_A486_30min_R1 2 LLRQSPPLPGR 11 1 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LLRQS(1)PPLPGR;LLRQS(1)PPLPGR ; 84.365 0.0021173 170910000 272860 285270 217620 78139 275760 273130 241500 221827 302870 433480 TRUE FALSE FALSE 253733.9231 262664.1663 301888.2921 181911.5409 241171.6094 239433.9976 181074.1457 171321.8345 329123.0155 324933.7865 0.780878855 0.808362125 0.929076337 0.559841877 0.742217705 0.736870118 0.557264751 0.527251525 1.012892562 1 18.30978624 -7.784856855 24.98741461 1.006446883 0.708630767 0.50236636 0.11988299 236.7098798 252572.0396 0.123308787 0.031914865 1.64E-08 7.784856855 -0.297816116 LLRQS(ph)PPLPGREEEPGLGDSGIQSTPGSGHAPR ddPTM_HeLa_A485_30min_R1 1 LLRQSPPLPGREEEPGLGDSGIQSTPGSGHAPR 33 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LLRQS(1)PPLPGREEEPGLGDSGIQSTPGSGHAPR 165.95 1.11E-14 800700000 58920 89994 88381 62532 110630 108910 107870 126330 95293 178320 TRUE FALSE FALSE 72026.55073 100518.0155 121076.8097 65947.96482 99615.28875 114612.3592 84822.69328 95347.36942 114417.431 133868.1057 0.538041159 0.750873518 0.904448517 0.492633884 0.744130114 0.856158818 0.633628845 0.712248589 0.854702697 1 17.03045275 -7.983093391 2.754276927 0.998746138 0.708839948 0.383099198 0.120336525 0.265645176 4.693342537 0.114219135 0.030856103 1.04E-08 7.983093391 -0.289906189 LLRQS(ph)PPLPGREEEPGLGDSGIQSTPGSGHAPR ddPTM_HeLa_A486_30min_R1 2 LLRQSPPLPGREEEPGLGDSGIQSTPGSGHAPR 33 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LLRQS(1)PPLPGREEEPGLGDSGIQSTPGSGHAPR;LLRQS(1)PPLPGREEEPGLGDSGIQSTPGSGHAPR ; 241.15 5.32E-51 1388690000 209600 221382 286131 37178 411590 231969 213878 217688 302356 212695 TRUE FALSE FALSE 194908.1224 203838.8841 396928.5861 86552.26287 359964.5443 203351.0233 160363.4622 168125.1945 328564.4615 159434.7876 1.222494321 1.278509459 2.489598362 0.542869371 2.257754093 1.27544952 1.005824793 1.054507595 2.060807848 1 17.28260692 -6.466733805 24.99994152 1.264223273 1.56089279 0.0539271 0.582567304 939.0804262 418148.8977 0.197455784 0.1741389 3.41E-07 6.466733805 0.296669516 LLS(ph)DPELSATESPLADK ddPTM_HeLa_A485_30min_R1 1 LLSDPELSATESPLADK 17 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 LLS(1)DPELSATESPLADK 145.55 7.25E-08 20786000 38100 35509 27491 44899 55847 38295 59794 49442 34947 73051 TRUE FALSE FALSE 46575.21356 39661.46866 37661.0649 47351.71868 50286.67659 40300.06698 47018.52343 37316.27198 41960.54235 54840.7301 0.849281428 0.723211901 0.686735294 0.863440705 0.916958554 0.7348565 0.857365016 0.680448125 0.765134641 1 15.74296016 -11.01412932 2.568169926 1.233549716 0.785156252 0.405288128 0.077617624 29932606.56 12114740.94 41249213.38 0.019799875 9.68E-12 11.01412932 -0.448393464 LLS(ph)DPELSATESPLADK ddPTM_HeLa_A486_30min_R1 1 LLSDPELSATESPLADK 17 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 LLS(1)DPELSATESPLADK 146.78 6.63E-08 22108000 33412 40747 22155 24964 48343 47908 61129 54822 31813 54688 TRUE FALSE FALSE 31069.99134 37518.05932 30734.00933 58117.45361 42279.37016 41997.59805 45833.87764 42340.22736 34570.57645 40993.76884 0.757919855 0.915213711 0.749723926 1.417714332 1.031360896 1.024487361 1.118069378 1.032845443 0.843312958 1 15.32311701 LLS(ph)DSLPPSTGTFQEAQSR ddPTM_HeLa_A485_30min_R1 4 LLSDSLPPSTGTFQEAQSR 19 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 LLS(0.888)DS(0.112)LPPSTGTFQEAQSR;LLS(1)DSLPPSTGTFQEAQSR;LLS(0.996)DS(0.004)LPPSTGTFQEAQSR;LLS(0.997)DS(0.003)LPPSTGTFQEAQSR ;;; 177.67 1.17E-13 306462000 239498 235503 211799 244673 327719 236626 319494 272782 220219 341749 TRUE FALSE FALSE 292773.5038 263043.0272 290152.2638 258038.8664 295090.1457 249015.3715 251231.4969 205881.7868 264414.9333 256557.2637 1.141162404 1.025279984 1.130945426 1.00577494 1.15019213 0.970603474 0.979241411 0.802478884 1.030627352 1 17.96892135 -6.419414145 4.966663638 0.941131845 1.084254145 0.461138492 0.071911802 0.19391219 7.417748326 0.024600064 0.021400462 3.81E-07 6.419414145 0.1431223 LLS(ph)DSLPPSTGTFQEAQSR ddPTM_HeLa_A486_30min_R1 4 LLSDSLPPSTGTFQEAQSR 19 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 LLS(1)DSLPPSTGTFQEAQSR;LLS(0.997)DS(0.003)LPPSTGTFQEAQSR;LLS(0.969)DS(0.031)LPPSTGTFQEAQSR;LLS(0.997)DS(0.003)LPPSTGTFQEAQSR ;;; 144.33 2.40E-08 157941000 212098 248381 204505 96393 248018 233107 295268 291835 202564 229512 TRUE FALSE FALSE 197231.0255 228698.385 283694.8128 224407.7754 216909.2698 204348.6284 221388.8234 225390.5412 220122.4106 172040.7013 1.146420725 1.329327207 1.648998235 1.304387704 1.260802055 1.187792347 1.28683981 1.310100107 1.279478687 1 17.39239039 -5.517433694 23.47103964 1.242043614 1.388079257 0.184437231 0.141368074 189.0965874 815109.1498 0.041678094 0.055630314 3.04E-06 5.517433694 0.146035643 LLS(ph)FLEQSEHK ddPTM_HeLa_A485_30min_R1 2 LLSFLEQSEHK 11 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 LLS(1)FLEQSEHK;LLS(1)FLEQSEHK ; 130.61 0.0001141 8733700 44615 40408 30695 57727 62659 40717 66914 58832 36304 85865 TRUE FALSE FALSE 54539.45283 45133.3641 42050.35783 60880.47984 56420.44995 42848.87916 52617.27726 44403.35976 43589.8798 64460.43573 0.846091904 0.700171564 0.65234368 0.944462741 0.87527255 0.664731454 0.816272442 0.688846721 0.676226887 1 15.97612632 -11.37781433 2.338216996 2.813859678 0.762804737 0.349895941 0.09703228 7855751.99 768021.2891 75863252.92 0.026411634 4.19E-12 11.37781433 -2.051054941 LLS(ph)FLEQSEHK ddPTM_HeLa_A486_30min_R1 2 LLSFLEQSEHK 11 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 LLS(1)FLEQSEHK;LLS(1)FLEQSEHK ; 92.457 0.0017922 7833800 29801.8 34743.6 18418.3 7985.2 31926.8 36531.8 55370 44506.8 28247.7 42612.4 TRUE FALSE FALSE 27712.84772 31990.3906 25550.35902 18589.94915 27922.24304 32024.87794 41515.84036 34373.57322 30696.23338 31941.97768 0.867599621 1.001515652 0.799899094 0.581991176 0.874155111 1.002595339 1.299726672 1.076125391 0.960999776 1 14.96316602 -6.316297582 3.493976719 1.095159917 0.817411902 0.476513158 0.12874564 0.222111166 5.491921772 0.050761615 0.045449928 4.83E-07 6.316297582 -0.277748015 LLS(ph)FQR ddPTM_HeLa_A485_30min_R1 5 LLSFQR 6 0 A1E5M1;Q9NP56;Q13946-3;Q13946-2;Q13946 A1E5M1 PDE7B;PDE7A "cAMP-specific 3,5-cyclic phosphodiesterase 7B;High affinity cAMP-specific 3,5-cyclic phosphodiesterase 7A" 1 0 LLS(1)FQR;LLS(1)FQR;LLS(1)FQR;LLS(1)FQR;LLS(1)FQR ;;;; 127.46 0.0055132 419937000 397386 488783 458002 518903 608868 490371 620537 649102 481569 680187 TRUE FALSE FALSE 485783.1447 545941.92 627435.9989 547249.357 548246.9641 516046.0673 487954.2006 489908.7167 578215.4811 510628.8988 0.951342836 1.069155939 1.228751448 1.071716384 1.073670067 1.010608817 0.955594565 0.95942223 1.132359493 1 18.96191566 -6.209035871 3.454505048 1.004906143 1.088285878 0.15407558 0.077395654 0.433276585 10.4985883 0.028429052 0.027550275 6.18E-07 6.209035871 0.083379735 LLS(ph)FQR ddPTM_HeLa_A486_30min_R1 6 LLSFQR 6 0 A1E5M1;Q9NP56;Q13946-3;Q13946-2;Q13946 A1E5M1 PDE7B;PDE7A "cAMP-specific 3,5-cyclic phosphodiesterase 7B;High affinity cAMP-specific 3,5-cyclic phosphodiesterase 7A" 1 0 LLS(1)FQR;LLS(1)FQR;LLS(1)FQR;LLS(1)FQR;LLS(1)FQR;LLS(1)FQR ;;;;; 137.9 0.0050592 669752000 720044 897610 638042 285369 943469 813136 917480 901938 736057 865260 TRUE FALSE FALSE 669572.6339 826480.1146 885108.9498 664353.4538 825130.3205 712819.5477 687916.7999 696586.4066 799859.0134 648593.2641 1.032345957 1.274265646 1.364659485 1.024299034 1.272184536 1.099023976 1.060628961 1.073995746 1.233221277 1 19.30695452 -6.348955855 10.00957694 1.09571587 1.198095972 0.164814137 0.112468651 0.946549893 103.5529721 0.03918512 0.034540978 4.48E-07 6.348955855 0.102380102 LLS(ph)GDSTEKR ddPTM_HeLa_A485_30min_R1 2 LLSGDSTEKR 10 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 LLS(0.875)GDS(0.115)T(0.01)EKR;LLS(0.707)GDS(0.292)T(0.002)EKR ; 119.21 0.00018048 799640000 962640 796490 730310 1205520 1166600 921820 1340170 1167950 947880 1749970 TRUE FALSE FALSE 1176775.947 889632.577 1000482.06 1271374.505 1050449.208 970085.0698 1053831.731 881508.4312 1138110.822 1313734.685 0.895748556 0.677178267 0.761555641 0.96775591 0.799590069 0.738417795 0.802164808 0.670994259 0.866317099 1 20.32524252 -8.009478453 24.64937412 1.000000009 0.788255924 0.364550383 0.085663364 368.8379054 959190.7431 0.083160932 0.02147206 9.78E-09 8.009478453 -0.211744086 LLS(ph)GDSTEKR ddPTM_HeLa_A486_30min_R1 2 LLSGDSTEKR 10 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 LLS(0.831)GDS(0.165)T(0.004)EKR;LLS(0.743)GDS(0.226)T(0.031)EKR ; 141.58 3.86E-06 1136990000 1407740 1470060 748790 729280 1482770 1660880 2028060 1893420 1274880 2133200 TRUE FALSE FALSE 1309064.696 1353567.092 1038741.541 1697800.696 1296787.16 1455977.512 1520617.937 1462329.599 1385387.625 1599032.835 0.818660297 0.846491118 0.649606136 1.06176725 0.810982196 0.910536344 0.950961046 0.9145088 0.86639098 1 20.60876813 -5.258980184 24.99986604 0.922184508 0.779076386 0.447180359 0.080569442 215.0109699 2185760.815 0.02134834 0.034859812 5.51E-06 5.258980184 -0.143108121 LLS(ph)GSESSSK ddPTM_HeLa_A486_30min_R1 1 LLSGSESSSK 10 0 G3XAI9;Q5BKY9-2;Q5BKY9 G3XAI9 FAM133B Protein FAM133B 1 0 LLS(0.916)GS(0.083)ES(0.001)SSK 71.085 0.013318 166810000 451010 505040 334990 269490 516030 555380 645200 608430 408070 712550 TRUE FALSE FALSE 419396.528 465018.7911 464707.0993 627386.3393 451304.7056 486862.8623 483764.1358 469903.7709 443441.8362 534122.8421 0.785206127 0.870621427 0.870037869 1.174610576 0.844945526 0.91151852 0.905716996 0.879767226 0.830224438 1 19.02681206 -9.28854251 0.008185521 1.868086838 2.82E-07 0.050132749 0.101423282 28994.46179 61.69195648 7286.896663 6793.418669 5.15E-10 9.28854251 -1.868086555 LLS(ph)PLRDTPPPQSLMVK ddPTM_HeLa_A485_30min_R1 2 LLSPLRDTPPPQSLMVK 17 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 LLS(1)PLRDTPPPQSLMVK;LLS(1)PLRDTPPPQSLMVK ; 244.72 7.33E-43 503730000 417120 504050 381560 372550 688600 497170 636790 749640 392690 507550 TRUE FALSE FALSE 509906.905 562994.2628 522714.922 392901.4632 620040.5662 523201.0524 500734.6144 565789.6146 471499.281 381027.1258 1.338243055 1.477570033 1.371857505 1.031164021 1.627287204 1.373133347 1.314170516 1.484906392 1.23744282 1 18.53953418 -8.037244729 6.366302751 1.000031914 1.374571599 0.391866826 0.14477495 0.267434375 40.61013159 0.136967781 0.03551379 9.18E-09 8.037244729 0.374539685 LLS(ph)PLRDTPPPQSLMVK ddPTM_HeLa_A486_30min_R1 1 LLSPLRDTPPPQSLMVK 17 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 LLS(1)PLRDTPPPQSLMVK 190.91 2.67E-18 165620000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LLS(ph)PLSSAR ddPTM_HeLa_A485_30min_R1 8 LLSPLSSAR 9 0 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 LLS(1)PLSSAR;LLS(0.998)PLS(0.002)SAR;LLS(0.999)PLS(0.001)SAR;LLS(0.985)PLS(0.015)SAR;LLS(0.999)PLS(0.001)SAR;LLS(0.999)PLS(0.001)SAR;LLS(1)PLSSAR;LLS(0.989)PLS(0.011)SAR ;;;;;;; 232.26 6.07E-13 7635580000 3624510 4360020 4315390 3854790 5621650 4271590 5205640 5413540 3895070 5044000 TRUE FALSE FALSE 4430769.745 4869886.412 5911832.339 4065367.417 5061938.787 4495243.847 4093412.488 4085860.827 4676774.821 3786623.628 1.170110943 1.28607617 1.561241074 1.073612753 1.336794803 1.187137748 1.081019106 1.079024806 1.235077811 1 21.8524806 -6.499828192 3.778331989 1.106444558 1.288744897 0.316506767 0.129050702 0.293012101 9.079145872 0.049450044 0.040461137 3.16E-07 6.499828192 0.182300339 LLS(ph)PLSSAR ddPTM_HeLa_A486_30min_R1 8 LLSPLSSAR 9 0 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 LLS(0.991)PLS(0.008)S(0.001)AR;LLS(0.997)PLS(0.003)SAR;LLS(0.813)PLS(0.187)SAR;LLS(0.995)PLS(0.005)SAR;LLS(0.999)PLS(0.001)SAR;LLS(0.974)PLS(0.026)SAR;LLS(0.999)PLS(0.001)SAR;LLS(0.974)PLS(0.024)S(0.001)AR ;;;;;;; 219.35 5.24E-12 8179413000 4416909 5003354 4026513 1657126 5470400 4426343 4984040 5160531 3934052 4761769 TRUE FALSE FALSE 4107306.488 4606870.007 5585686.667 3857873.075 4784251.423 3880265.804 3736980.476 3985590.745 4275058.795 3569391.048 1.1507023 1.290659932 1.564885044 1.080821076 1.340355079 1.08709462 1.046951826 1.116602437 1.197699758 1 21.76724654 -6.269479072 24.27714922 1.094287495 1.289924242 0.368916695 0.127917447 471.1238736 1422629.967 0.044724529 0.040166685 5.38E-07 6.269479072 0.195636747 LLS(ph)PQQPALQR ddPTM_HeLa_A485_30min_R1 5 LLSPQQPALQR 11 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR ;;;; 190.34 8.08E-11 1508910000 1166175 1620986 1432253 1163260 1635282 1483807 1563270 1830962 1325147 1424920 TRUE FALSE FALSE 1425586.605 1810546.212 1962102.986 1226805.948 1472467.582 1561496.84 1229264.594 1381915.699 1591091.848 1069713.668 1.332680556 1.692552191 1.834231949 1.146854514 1.376506281 1.459733466 1.149152928 1.2918557 1.487399756 1 20.02879325 -6.780045426 0.04999757 1.99E-11 2.715462285 0.332474271 0.197424031 71.32966007 2.221068873 54.90793911 63.68547706 1.66E-07 6.780045426 2.715462285 LLS(ph)PQQPALQR ddPTM_HeLa_A486_30min_R1 6 LLSPQQPALQR 11 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR;LLS(1)PQQPALQR ;;;;; 190.34 8.08E-11 1737520000 1195800 1411850 1096847 461717 1499020 1139853 1292940 1246700 1003918 1132630 TRUE FALSE FALSE 1111980.595 1299969.864 1521575.533 1074900.51 1310998.934 999229.526 969432.7367 962853.6253 1090938.421 849012.0758 1.309734722 1.531155918 1.792171839 1.266060331 1.544146392 1.176932054 1.141836217 1.134087079 1.284950417 1 19.69542555 -6.277467519 11.42253174 1.155502858 1.495517343 0.567946987 0.148609132 0.596289479 421.5900145 0.051668044 0.046473869 5.28E-07 6.277467519 0.340014485 LLS(ph)PRPS(ph)LLTPTGDPR ddPTM_HeLa_A485_30min_R1 1 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 LLS(1)PRPS(0.7)LLT(0.289)PT(0.011)GDPR 94.057 0.00092252 237760000 124740 148790 147680 150020 195910 159950 181400 208960 152830 184780 TRUE FALSE FALSE 152487.9827 166189.6962 202312.9775 158215.2127 176404.5125 168324.7347 142642.4081 157712.2324 183501.5792 138717.7466 1.09926802 1.198042069 1.458450576 1.140554951 1.271679485 1.213433312 1.028292425 1.136929025 1.322841407 1 17.08179284 -6.543350265 24.41838416 1.131631612 1.239307303 0.161688049 0.120304903 364.6660884 434968.1999 0.046000071 0.035635881 2.86E-07 6.543350265 0.107675691 LLS(ph)PRPS(ph)LLTPTGDPR ddPTM_HeLa_A486_30min_R1 1 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 LLS(1)PRPS(0.62)LLT(0.372)PT(0.008)GDPR 74.662 0.0073185 67973000 120810 123810 95215 49151 145320 114550 120840 125770 102370 119730 TRUE FALSE FALSE 112341.8429 113998.8447 132084.7979 114426.012 127092.6105 100417.9857 90604.55388 97134.91654 111243.514 89748.82869 1.251736034 1.270198691 1.47171612 1.274958277 1.416092136 1.118877952 1.009534667 1.082297318 1.239498227 1 16.45360549 -6.342696087 5.995399118 1.087393417 1.33686696 0.663972916 0.087950894 0.146009826 8.578444227 0.031217093 0.02748915 4.54E-07 6.342696087 0.249473543 LLS(ph)PRPSLLT(ph)PTGDPR ddPTM_HeLa_A485_30min_R1 1 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 LLS(1)PRPS(0.391)LLT(0.597)PT(0.012)GDPR 106.73 0.00021083 140760000 123470 138980 122670 138460 176620 125430 161200 182060 122970 166780 TRUE FALSE FALSE 150935.4755 155232.502 168050.7377 146023.7192 159035.0926 131997.3208 126758.3031 137409.4995 147648.9511 125204.8154 1.205508551 1.239828529 1.342206665 1.166278779 1.27019949 1.054251152 1.012407572 1.097477754 1.179259365 1 16.93393052 -6.262959035 24.9984181 1.071254548 1.245576671 0.664978153 0.062491827 87.55600288 1440290.982 0.021705276 0.020153478 5.46E-07 6.262959035 0.174322123 LLS(ph)PRPSLLT(ph)PTGDPR ddPTM_HeLa_A486_30min_R1 1 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 LLS(1)PRPS(0.347)LLT(0.637)PT(0.015)GDPR 92.95 0.00077839 61507000 113460 125210 97302 41521 144720 114290 120760 119640 93500 117870 TRUE FALSE FALSE 105507.0399 115287.9036 134979.9402 96662.98636 126567.8681 100190.0618 90544.57073 92400.58372 101604.6553 88354.5848 1.194132032 1.304832159 1.527707255 1.094034753 1.432499156 1.133954305 1.02478633 1.045792745 1.149964719 1 16.43101738 -6.454743745 5.579589301 1.061072103 1.30965899 0.521900123 0.116564656 0.178480081 10.56632557 0.040761811 0.035346893 3.51E-07 6.454743745 0.248586887 LLS(ph)PRPSLLTPTGDPR ddPTM_HeLa_A485_30min_R1 6 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 LLS(0.995)PRPS(0.005)LLTPTGDPR;LLS(1)PRPSLLTPTGDPR;LLS(0.996)PRPS(0.002)LLT(0.001)PTGDPR;LLS(0.998)PRPS(0.001)LLTPTGDPR;LLS(0.997)PRPS(0.003)LLTPTGDPR;LLS(0.971)PRPS(0.029)LLTPTGDPR ;;;;; 107.72 0.00011163 5499692000 4075555 5301371 4939931 4126068 6316250 5049055 6271159 7076497 4827838 5778360 TRUE FALSE FALSE 4982148.149 5921320.223 6767417.045 4351464.647 5687381.972 5313415.712 4931274.649 5340975.015 5796740.803 4337921.195 1.148510525 1.365013322 1.560059932 1.003122107 1.311084669 1.224876035 1.136782903 1.231229148 1.336294631 1 22.04857241 -13.99999942 0.176679712 1.79E-08 1.312053516 0.213965188 0.144256002 211.9604235 2.026948879 74.84965028 0.477484011 1.00E-14 13.99999942 1.312053499 LLS(ph)PRPSLLTPTGDPR ddPTM_HeLa_A486_30min_R1 6 LLSPRPSLLTPTGDPR 16 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 LLS(0.995)PRPS(0.005)LLTPTGDPR;LLS(1)PRPSLLTPTGDPR;LLS(1)PRPSLLTPTGDPR;LLS(1)PRPSLLTPTGDPR;LLS(0.997)PRPS(0.003)LLTPTGDPR;LLS(0.999)PRPS(0.001)LLTPTGDPR ;;;;; 122.22 1.73E-05 5849360000 4282260 4774440 3942250 1597305 5470970 4256390 4837850 5028280 3826130 4492960 TRUE FALSE FALSE 3982095.688 4396095.986 5468794.777 3718606.763 4784749.928 3731279.878 3627368.76 3883450.411 4157782.029 3367893.572 1.182369812 1.3052954 1.62380273 1.104134286 1.42069511 1.107897206 1.077043761 1.153079908 1.234534863 1 21.68341512 -6.275286161 24.23805964 1.121736908 1.330118023 0.362245347 0.140955286 621.5938379 1088063.217 0.048937301 0.043402428 5.31E-07 6.275286161 0.208381115 LLS(ph)PSNEK ddPTM_HeLa_A485_30min_R1 2 LLSPSNEK 8 0 Q14694;Q14694-3;Q14694-2;H3BNA1;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 LLS(0.761)PS(0.239)NEK;LLS(0.5)PS(0.5)NEK ; 79.148 0.0098236 339180000 792800 717500 566290 1021390 1003880 780750 1070870 1177760 724570 1382410 TRUE FALSE FALSE 969155.6249 801405.3836 775784.2363 1077185.949 903930.1824 821628.8627 842069.8763 888912.5133 869984.5529 1037800.628 0.933855307 0.772215165 0.747527237 1.037950759 0.871005623 0.791702029 0.811398503 0.856534954 0.838296421 1 19.98509788 -10.20018368 5.415009003 1.000007041 0.849111537 0.235927402 0.080276852 6.97E-06 1.03E-06 0.079393385 0.019254826 6.31E-11 10.20018368 -0.150895504 LLS(ph)PSNEK ddPTM_HeLa_A486_30min_R1 3 LLSPSNEK 8 0 Q14694;Q14694-3;Q14694-2;H3BNA1;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 LLS(0.84)PS(0.16)NEK;LLS(0.998)PS(0.002)NEK;LLS(0.852)PS(0.148)NEK ;; 111.61 0.0011548 681030000 1799270 2024210 1144060 830020 1949650 2125740 2553980 2491320 1543780 2501490 TRUE FALSE FALSE 1673150.464 1863804.228 1587070.671 1932328.507 1705106.717 1863487.812 1914947.191 1924100.821 1677596.093 1875100.622 0.892299029 0.99397558 0.846392269 1.030519901 0.909341449 0.993806834 1.021250363 1.026132037 0.894669904 1 20.83853659 -5.275784315 24.97806056 0.982403836 0.919197613 0.253807537 0.055522314 1160.833394 2021293.919 0.015127063 0.022548737 5.30E-06 5.275784315 -0.063206224 LLS(ph)SNEDDANILSSPTDR ddPTM_HeLa_A485_30min_R1 2 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLS(0.978)S(0.022)NEDDANILSSPTDR;LLS(0.974)S(0.026)NEDDANILSSPTDR ; 174.82 1.19E-12 188863000 110330 171697 166085 127082 180117 148838 149709 166729 134440 145537 TRUE FALSE FALSE 134872.5279 191775.4706 227526.7529 134024.1679 162183.9191 156630.9275 117722.4491 125838.4513 161420.8748 109257.3043 1.234448614 1.755264527 2.082485508 1.226683824 1.484421752 1.433596852 1.077478983 1.151762366 1.477437832 1 16.73737021 -6.006888466 1.138664245 1.20204281 1.656449575 0.322479264 0.258824686 0.576232772 1.578086386 0.123541159 0.141940604 9.84E-07 6.006888466 0.454406765 LLS(ph)SNEDDANILSSPTDR ddPTM_HeLa_A486_30min_R1 1 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLS(0.977)S(0.023)NEDDANILSSPTDR 207.07 1.97E-25 68121000 39919 43974 37582 17997 46186 34900 41297 46429 37585 43514 TRUE FALSE FALSE 37120.88424 40489.34009 52134.75688 41897.92552 40392.92121 30594.39284 30964.0538 35858.13024 40842.89806 32617.81117 1.138055648 1.241326093 1.598352403 1.28451064 1.238370073 0.937965846 0.949298947 1.099342014 1.252165507 1 14.99337235 -6.05462887 4.068719151 1.048445718 1.325735513 0.464225902 0.137020066 0.215761075 7.296504663 0.049088985 0.050863618 8.82E-07 6.05462887 0.277289795 LLS(ph)TKGDTLDVVLLEAR ddPTM_HeLa_A485_30min_R1 1 LLSTKGDTLDVVLLEAR 17 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 LLS(0.988)T(0.012)KGDTLDVVLLEAR 276.79 9.42E-60 66966000 130790 103950 70895 155360 157610 130050 184960 164840 72422 191760 TRUE FALSE FALSE 159883.7843 116106.0483 97122.01069 163846.9234 141917.795 136859.2169 145441.785 124412.7315 86956.43111 143957.7611 1.110629834 0.806528577 0.674656302 1.138159709 0.985829412 0.95069009 1.010308746 0.864230804 0.604041286 1 17.13528604 -7.523726284 24.99994287 0.779392432 0.945028995 0.132719549 0.155685825 56.20250968 1657487.339 0.102530714 0.03948225 2.99E-08 7.523726284 0.165636563 LLS(ph)TKGDTLDVVLLEAR ddPTM_HeLa_A486_30min_R1 1 LLSTKGDTLDVVLLEAR 17 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 LLS(0.977)T(0.023)KGDTLDVVLLEAR 141.1 2.27E-07 71612000 114000 106530 56501 68704 110260 127180 161580 151260 83125 169250 TRUE FALSE FALSE 106009.1887 98088.17482 78379.70035 159946.3841 96430.16267 111489.8247 121150.975 116821.4 90330.34193 126868.6984 0.835581905 0.773147168 0.617801722 1.260723773 0.760078443 0.878781182 0.954931961 0.920805537 0.71199865 1 16.95297664 LLS(ph)WSDNWR ddPTM_HeLa_A485_30min_R1 2 LLSWSDNWR 9 0 J3KSY6;J3KSX6;Q8TCD5 J3KSY6 NT5C "5(3)-deoxyribonucleotidase, cytosolic type" 1 0 LLS(0.994)WS(0.006)DNWR;LLS(0.998)WS(0.002)DNWR ; 140.78 0.00012971 98053000 104966 117681 119273 132221 153657 116917 152404 141882 110984 158333 TRUE FALSE FALSE 128315.3246 131442.7693 163397.0461 139443.8984 138358.3696 123038.5933 119841.6404 107085.217 133257.4708 118863.497 1.079518337 1.105829566 1.374661273 1.17314316 1.164010592 1.035125135 1.008229132 0.900909192 1.121096671 1 16.85894621 -6.280725902 2.566696187 1.000189922 1.190389034 0.471250665 0.088435492 0.258521711 3.371856855 0.034805057 0.031810091 5.24E-07 6.280725902 0.190199112 LLS(ph)WSDNWR ddPTM_HeLa_A486_30min_R1 2 LLSWSDNWR 9 0 J3KSY6;J3KSX6;Q8TCD5 J3KSY6 NT5C "5(3)-deoxyribonucleotidase, cytosolic type" 1 0 LLS(0.963)WS(0.037)DNWR;LLS(0.827)WS(0.173)DNWR ; 147.28 8.84E-05 206458000 176177 221930 169269 91274 220520 199463 218110 221370 173539 205887 TRUE FALSE FALSE 163827.9021 204343.4585 234814.49 212490.4847 192860.3253 174855.2831 163536.5711 170968.8835 188581.5002 154331.5551 1.061532115 1.324054944 1.521493708 1.376844059 1.249649336 1.132984651 1.059644419 1.107802506 1.221924448 1 17.23567354 -6.143464047 2.829764333 1.106051269 1.334137173 0.430950323 0.117959098 0.276198359 4.275762244 0.044294156 0.044278529 7.19E-07 6.143464047 0.228085904 LLSFS(ph)PEEFPTLK ddPTM_HeLa_A485_30min_R1 2 LLSFSPEEFPTLK 13 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LLSFS(1)PEEFPTLK;LLSFS(1)PEEFPTLK ; 306.14 1.88E-58 663910000 863300 938870 830690 957830 1275520 1033730 1337360 1485790 940420 1331590 TRUE FALSE FALSE 1055338.107 1048662.679 1137996.799 1010153.828 1148524.75 1087854.504 1051622.111 1121397.673 1129153.668 999649.1191 1.055708535 1.049030764 1.13839624 1.010508396 1.148927887 1.088236346 1.051991234 1.121791288 1.129550005 1 19.93106227 LLSFS(ph)PEEFPTLK ddPTM_HeLa_A486_30min_R1 2 LLSFSPEEFPTLK 13 0 Q5JSZ5;A0A1W2PQP5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LLSFS(1)PEEFPTLK;LLSFS(1)PEEFPTLK ; 256.13 3.22E-41 664860000 867780 968330 667180 413290 1051680 947220 1153750 1107650 766760 1048130 TRUE FALSE FALSE 806953.1032 891596.0042 925529.9637 962160.0065 919768.4879 830361.627 865069.5469 855462.2748 833223.3742 785671.4258 1.027087249 1.134820454 1.178011486 1.224634084 1.170678298 1.056881541 1.101057667 1.088829562 1.060523963 1 19.58356657 -6.263827142 24.94434238 1.069485337 1.15239782 0.383772771 0.053533544 242.9544863 2538071.764 0.019463981 0.018004546 5.45E-07 6.263827142 0.082912483 LLSGAS(ph)TK ddPTM_HeLa_A486_30min_R1 1 LLSGASTK 8 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 LLS(0.023)GAS(0.899)T(0.078)K 68.49 0.017959 92983000 221000 185750 94455 86119 152960 199040 241630 294790 128200 208510 TRUE FALSE FALSE 205509.0412 171030.4935 131030.5056 200489.3842 133774.3305 174484.4685 181171.6183 227672.7522 139312.4792 156297.7388 1.314856138 1.094260831 0.838339099 1.282740145 0.855894215 1.116359519 1.159144206 1.456660563 0.891327541 1 17.25393738 -6.521102049 23.26852508 1.160968739 1.06729328 0.001417096 0.197887808 104.2176769 1364989.616 0.072428179 0.05710349 3.01E-07 6.521102049 -0.093675459 LLSGDS(ph)TEKR ddPTM_HeLa_A485_30min_R1 1 LLSGDSTEKR 10 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 LLS(0.234)GDS(0.553)T(0.214)EKR 88.734 0.0020255 390620000 442560 343210 269440 621590 476560 428590 654690 607810 389750 862630 TRUE FALSE FALSE 541005.9452 383345.424 369117.0683 655545.8878 429112.0131 451030.3097 514810.1332 458743.6445 467969.25 647592.2165 0.835411439 0.591954959 0.569983794 1.012281913 0.662626885 0.696472716 0.794960347 0.708383506 0.722629516 1 19.30472612 -10.34554963 2.653547056 1.004901916 0.730022915 0.305680179 0.120772433 4906082.44 5414242.802 188772.0171 0.031344157 4.51E-11 10.34554963 -0.274879001 LLSGPSQES(ph)PQTLGK ddPTM_HeLa_A485_30min_R1 1 LLSGPSQESPQTLGK 15 0 C9JZE3;C9JYJ8;Q9BWE0;Q9BWE0-4;E7EVL6 C9JZE3 REPIN1 Replication initiator 1 1 0 LLSGPS(0.019)QES(0.981)PQTLGK 144.46 8.60E-08 167720000 136420 169330 127470 124640 196850 171990 209750 221880 157270 198720 TRUE FALSE FALSE 166766.1584 189131.6705 174626.4575 131448.7676 177250.9228 180995.1305 164935.199 167463.5821 188832.6464 149182.7612 1.117864806 1.267785024 1.170553864 0.881125718 1.188146147 1.213244272 1.105591542 1.122539768 1.26578061 1 17.18672131 -11.43975753 1.903661793 4.72E-05 1.145496523 0.152611024 0.104515208 2749332.701 213698.1938 11839353.04 0.026929194 3.63E-12 11.43975753 1.145449301 LLSGPSQES(ph)PQTLGK ddPTM_HeLa_A486_30min_R1 1 LLSGPSQESPQTLGK 15 0 C9JZE3;C9JYJ8;Q9BWE0;Q9BWE0-4;E7EVL6 C9JZE3 REPIN1 Replication initiator 1 1 0 LLSGPS(0.001)QES(0.999)PQTLGK 140.22 2.12E-06 141700000 162710 166280 116180 67866 181270 180240 195120 175940 125720 186700 TRUE FALSE FALSE 151304.8692 153103.3672 161168.0074 157995.4778 158533.4263 158003.8213 146298.9122 135882.3027 136617.5108 139949.1048 1.081142101 1.093993187 1.151618709 1.128949542 1.132793429 1.129009161 1.045372262 0.97094085 0.976194246 1 17.09454273 -6.979284269 2.956155818 0.980969126 1.120963212 0.900293864 0.020553783 0.080294184 1.428117185 0.011218005 0.006581874 1.05E-07 6.979284269 0.139994085 LLSHGVPLPNWLINSYK ddPTM_HeLa_A486_30min_R1 1 LLSHGVPLPNWLINSYK 17 0 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 0 0 149.57 4.47E-09 6785800 7812.4 10393 8129.5 2908.8 9548.3 10696 11294 11243 8966.7 10072 FALSE FALSE TRUE 7264.791103 9569.420829 11277.46012 6771.833403 8350.66318 9376.436269 8468.121744 8683.214333 9743.940776 7549.905642 0.962236013 1.267488798 1.493721995 0.896942786 1.106061927 1.24192761 1.121619547 1.150108987 1.290604312 1 12.8822429 -11.29747718 2.26908125 0.183090911 1.172647281 0.091266735 0.160819402 8406330.162 1047637.461 36318945.49 0.040970919 5.04E-12 11.29747718 0.98955637 LLSILLSK ddPTM_HeLa_A485_30min_R1 1 LLSILLSK 8 0 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 0 0 101.64 0.017806 0 3989.2 4569.8 4653.4 4548.4 5715.8 4434.1 5484.1 6798.6 3482.4 6066.9 FALSE FALSE TRUE 4876.583777 5104.198358 6374.886304 4796.867575 5146.714883 4666.26262 4312.377234 5131.23269 4181.285738 4554.533483 1.070709831 1.12068522 1.399679315 1.053207226 1.13002021 1.024531412 0.946831822 1.126620917 0.918049182 1 12.15308757 -5.983605235 1.645679186 1.006224242 1.181912633 0.364403394 0.101709945 0.419194527 2.312036641 0.039681128 0.044536982 1.04E-06 5.983605235 0.175688391 LLSILLSK ddPTM_HeLa_A486_30min_R1 1 LLSILLSK 8 0 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 0 0 114.89 0.0083956 0 4525.3 4587.6 3833.6 1220.5 4870.9 3050.2 2711.4 4290.4 3826.6 4245.1 FALSE FALSE TRUE 4208.099839 4224.061868 5318.072587 2841.385681 4259.946303 2673.897336 2032.979042 3313.569579 4158.292769 3182.099329 1.322428813 1.327445008 1.671246569 0.892928029 1.338721976 0.840293485 0.638879818 1.041315571 1.306776546 1 11.63576315 -5.27267623 24.98675265 1.001498205 1.429080625 0.460550758 0.214036861 662.1572519 1472400.248 0.063244984 0.094761688 5.34E-06 5.27267623 0.42758242 LLSIS(ph)GKR ddPTM_HeLa_A485_30min_R1 2 LLSISGKR 8 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 LLSIS(1)GKR;LLSIS(1)GKR ; 107.83 0.000778 2511500000 1949290 1987990 1609050 2052350 3018200 2166220 2572400 2888300 1918640 2692400 TRUE FALSE FALSE 2382902.836 2220468.137 2204304.553 2164464.684 2717697.41 2279639.93 2022785.725 2179939.896 2303693.449 2021234.23 1.178934534 1.09857042 1.090573532 1.070862868 1.344573217 1.127845499 1.000767598 1.078519186 1.139745911 1 20.94680509 -8.107299237 0.507876542 1.002171713 1.143116935 0.182703423 0.084782787 2.221839429 1.355747269 0.111462814 0.050177739 7.81E-09 8.107299237 0.140945221 LLSIS(ph)GKR ddPTM_HeLa_A486_30min_R1 2 LLSISGKR 8 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 LLSIS(1)GKR;LLSIS(1)GKR ; 107.83 0.000778 4035300000 2740300 2946700 2096810 1226450 3290100 3140500 3732700 3625200 2216700 3134400 TRUE FALSE FALSE 2548219.121 2713192.76 2908750.987 2855237.581 2877424.979 2753057.04 2798738.98 2799821.098 2408845.341 2349525.838 1.084567396 1.154783112 1.238016173 1.215239915 1.224683267 1.171750059 1.191193105 1.191653674 1.025247436 1 21.1639382 -7.791323649 5.162240107 1.004794601 1.187405622 0.736580237 0.041012153 0.096371852 6.312508517 0.039472018 0.010992756 1.62E-08 7.791323649 0.18261102 LLSISGK ddPTM_HeLa_A485_30min_R1 2 LLSISGK 7 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 0 ; ; 163.34 0.0016338 136548000 513330 501170 458670 585000 612460 493510 552820 463720 524670 698460 FALSE FALSE TRUE 627518.4875 559777.4719 628351.1199 616957.0687 551481.3319 519349.4205 434705.4909 349991.9429 629966.4564 524346.7762 1.196762364 1.067571114 1.198350306 1.176620314 1.051749256 0.990469369 0.829041983 0.667481825 1.201430971 1 19.00016173 -6.202084177 2.089088367 0.900762389 1.153994485 0.376284424 0.132753556 0.317159746 2.719692194 0.050818024 0.048647034 6.28E-07 6.202084177 0.253232096 LLSISGK ddPTM_HeLa_A486_30min_R1 2 LLSISGK 7 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 0 ; ; 167.82 0.0010213 132116000 451900 526810 349630 149410 456610 499920 502550 483210 415450 524500 FALSE FALSE TRUE 420224.1436 485063.657 485016.0994 347834.0308 399337.7161 438244.9532 376806.6746 373193.6314 451461.5405 393161.7861 1.068832624 1.233750772 1.23362981 0.884709662 1.015708368 1.114668233 0.958401065 0.949211354 1.148284387 1 18.58476358 -5.245058599 24.99855971 1.010455755 1.184239048 0.458198052 0.083950015 724.6688163 1105908.781 0.022649723 0.039086168 5.69E-06 5.245058599 0.173783293 LLSISGK(ac)R ddPTM_HeLa_A485_30min_R1 2 LLSISGKR 8 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 1 ; LLSISGK(1)R;LLSISGK(1)R 241.03 3.61E-21 1215570000 770510 991140 988740 700620 1002160 835010 979300 932310 939200 1036000 FALSE TRUE FALSE 941907.2913 1107045.201 1354516.071 738893.0965 902381.4316 878729.8324 770064.5549 703659.5107 1127688.825 777744.2662 1.211075841 1.423405159 1.741595702 0.950046344 1.160254689 1.12984418 0.99012566 0.904744067 1.449948105 1 19.56893633 -5.276817649 24.99920826 1.080827401 1.45516355 0.457391585 0.187206092 689.757398 1121281.077 0.052047036 0.077514626 5.29E-06 5.276817649 0.374336149 LLSISGK(ac)R ddPTM_HeLa_A486_30min_R1 2 LLSISGKR 8 1 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 1 ; LLSISGK(1)R;LLSISGK(1)R 228.45 2.68E-15 1670970000 1100930 1316380 1102350 309550 1241950 1087550 1109720 1112840 977080 1108710 FALSE TRUE FALSE 1023760.492 1212065.255 1529209.442 720648.0438 1086173.05 953379.1384 832056.3186 859470.6251 1061774.081 831081.7995 1.231840828 1.45841872 1.840022779 0.867120474 1.306938801 1.147154394 1.001172591 1.034158883 1.277580717 1 19.66463096 -5.270426933 24.99983479 1.099658432 1.50492658 0.517542988 0.185445713 515.9807461 1435254.349 0.051828829 0.07816373 5.37E-06 5.270426933 0.405268148 LLSKDDT(ph)SPPKDK ddPTM_HeLa_A485_30min_R1 1 LLSKDDTSPPKDK 13 2 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3;A0A1B0GTZ9 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 LLSKDDT(0.518)S(0.482)PPKDK 66.335 0.01476 240910000 292090 136990 72468 688460 226520 253350 529060 441390 162770 819830 TRUE FALSE FALSE 357064.4128 153009.7888 99276.92885 726068.8265 203966.8734 266615.0142 416022.009 333138.4104 195436.446 615461.4689 0.580157217 0.248609859 0.161304865 1.179714512 0.331404781 0.433195298 0.675951347 0.541282318 0.317544568 1 19.23130901 -11.22579439 2.322558092 2.675114428 0.4993811 0.234307935 0.272975094 30035432.22 4709246.712 264976891 0.069690098 5.95E-12 11.22579439 -2.175733328 LLSKDDTS(ph)PPKDK ddPTM_HeLa_A486_30min_R1 1 LLSKDDTSPPKDK 13 2 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3;A0A1B0GTZ9 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 LLSKDDT(0.209)S(0.791)PPKDK 73.208 0.0041043 485480000 638120 424940 130370 607850 379820 786370 1168100 983380 384650 1878600 TRUE FALSE FALSE 593391.0833 391266.2068 180852.7554 1415105.519 332179.4339 689355.6646 875829.0251 759485.841 417991.7717 1408186.332 0.421386765 0.277851161 0.128429563 1.004913545 0.235891676 0.489534409 0.621955351 0.539336183 0.296829874 1 20.42540681 -14 0.226096092 3.81910992 0.388834648 0.326485893 0.235874594 191.3976032 1.916663147 247.170377 0.424090657 1.00E-14 14 -3.430275272 LLSLISIALPENK ddPTM_HeLa_A485_30min_R1 1 LLSLISIALPENK 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 0 183 2.36E-10 0 11661 12283 10613 13113 16168 10028 16265 14898 11063 21232 FALSE FALSE TRUE 14254.94922 13719.39 14539.19034 13829.32999 14558.25715 10553.05057 12789.84988 11244.24214 13283.24262 15939.25315 0.894329809 0.860729789 0.912162584 0.867627226 0.913358802 0.662079363 0.802412118 0.705443476 0.833366689 1 13.96029641 -6.210553417 24.9997778 0.782359714 0.888063601 0.1983553 0.085544878 461.1541304 226560.4258 0.026184408 0.026184379 6.16E-07 6.210553417 0.105703887 LLSLISIALPENK ddPTM_HeLa_A486_30min_R1 1 LLSLISIALPENK 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 0 147.91 1.53E-05 0 9255 8392.8 5638.9 4437.9 8936.5 8606.1 10641 9911.8 7757.9 10039 FALSE FALSE TRUE 8606.272293 7727.723962 7822.433095 10331.65548 7815.60084 7544.366882 7978.509251 7655.099513 8430.361018 7525.169057 1.143664977 1.026916991 1.039502639 1.372946628 1.038594719 1.002551149 1.060243191 1.017266118 1.120288588 1 12.87750828 LLSNS(ph)QTLGNDMLMNTPR ddPTM_HeLa_A486_30min_R1 1 LLSNSQTLGNDMLMNTPR 18 0 H3BU04;Q9BVW5 H3BU04 TIPIN TIMELESS-interacting protein 1 0 LLS(0.002)NS(0.998)QTLGNDMLMNTPR 158.44 5.03E-09 46830000 18750 29496 35470 8701.4 42078 19865 25906 25251 27299 26684 TRUE FALSE FALSE 17435.72183 27158.62954 49204.93392 20257.29894 36800.18488 17414.25827 19424.04479 19501.89853 29665.2993 20002.15272 0.871692266 1.357785331 2.459981914 1.012755938 1.839811214 0.870619204 0.971097715 0.974989982 1.48310533 1 14.28786766 -6.27144556 24.95465282 1.052845272 1.525366849 0.206584441 0.438678867 1104.786736 2755246.663 0.153940275 0.137326219 5.35E-07 6.27144556 0.472521577 LLSNSQTLGNDMLMNT(ph)PR ddPTM_HeLa_A486_30min_R1 1 LLSNSQTLGNDMLMNTPR 18 0 H3BU04;Q9BVW5 H3BU04 TIPIN TIMELESS-interacting protein 1 0 LLSNSQTLGNDMLMNT(1)PR 108.71 0.00057795 40704000 23684 37731 35473 10420 43637 32621 28955 29852 34960 23062 TRUE FALSE FALSE 22023.8739 34741.05815 49209.0956 24258.2866 38163.64056 28596.55269 21710.15275 23055.35126 37990.36095 17287.12509 1.274004427 2.00964926 2.846574855 1.403257422 2.207633737 1.654211012 1.255856751 1.333671802 2.197610114 1 14.07741034 -6.485670482 6.733657221 1.471141955 1.968917324 0.185848715 0.494671244 0.37144431 51.3529082 0.177038903 0.152236292 3.27E-07 6.485670482 0.497775369 LLSPQMS(ph)GEEEDSDLAAK ddPTM_HeLa_A485_30min_R1 3 LLSPQMSGEEEDSDLAAK 18 0 P42858;A0A3B3IU44 P42858 HTT Huntingtin 1 0 LLSPQMS(1)GEEEDSDLAAK;LLSPQMS(1)GEEEDSDLAAK;LLS(0.005)PQMS(0.995)GEEEDSDLAAK ;; 172.83 1.85E-12 188066000 138122 160438 120829 182173 189338 144119 232153 228056 159379 251724 TRUE FALSE FALSE 168846.7624 179199.8285 165528.6752 192124.6497 170486.8439 151664.848 182551.615 172124.9084 191364.9034 188973.8394 0.893492787 0.948278497 0.875934339 1.016673262 0.902171668 0.802570602 0.966015273 0.910839876 1.012652883 1 17.527827 -7.760734065 24.99967978 1.006326482 0.915319079 0.317870514 0.053797611 22.09462073 783384.2895 0.041760761 0.013661694 1.73E-08 7.760734065 -0.091007403 LLSPQMS(ph)GEEEDSDLAAK ddPTM_HeLa_A486_30min_R1 2 LLSPQMSGEEEDSDLAAK 18 0 P42858;A0A3B3IU44 P42858 HTT Huntingtin 1 0 LLSPQMS(1)GEEEDSDLAAK;LLSPQMS(1)GEEEDSDLAAK ; 193.54 1.17E-19 65830000 82494 100029 57490 30126 77575 101686 108635 113081 79363 127604 TRUE FALSE FALSE 76711.5966 92102.33774 79751.66764 70134.85048 67844.82014 89141.01519 81453.37398 87334.92484 86242.24874 95651.12784 0.801993644 0.962898607 0.833776553 0.733236001 0.709294513 0.931938987 0.851567314 0.913056927 0.90163337 1 16.54549436 -7.693819421 0.798586689 0.991848346 0.823844818 0.360077308 0.072730208 0.738628925 1.007800028 0.075093768 0.029582603 2.02E-08 7.693819421 -0.168003528 LLSPS(ph)NEK ddPTM_HeLa_A485_30min_R1 1 LLSPSNEK 8 0 Q14694;Q14694-3;Q14694-2;H3BNA1;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 LLS(0.278)PS(0.722)NEK 90.108 0.0039413 275640000 647020 611440 494400 864440 827080 673740 1027500 989000 635440 1099200 TRUE FALSE FALSE 790947.3668 682942.5892 677299.1337 911662.1683 744733.0111 709015.9846 807966.2311 746446.1993 762966.9794 825189.6693 0.958503719 0.827618928 0.820779948 1.104791059 0.902499194 0.859215779 0.979127904 0.904575308 0.924595893 1 19.65436623 LLSPYS(ph)PQTQETDSAVQK ddPTM_HeLa_A486_30min_R1 1 LLSPYSPQTQETDSAVQK 18 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 LLS(0.165)PY(0.004)S(0.831)PQTQETDSAVQK 123.36 1.90E-06 0 23760 24809 16490 9586.9 25714 24578 28993 28733 18119 25001 TRUE FALSE FALSE 22094.5467 22843.04449 22875.36962 22318.7877 22488.71035 21545.81625 21738.64474 22191.12314 19689.56951 18740.58687 1.178967705 1.218907639 1.220632511 1.190933232 1.200000326 1.149687382 1.159976734 1.184121036 1.050637829 1 14.19387851 -7.846939694 2.976757947 1.000242673 1.189601574 0.903272409 0.02156954 0.073866463 1.242616507 0.023087655 0.006309337 1.42E-08 7.846939694 0.189358901 LLSRPQDALEGVVLS(ph)PSLEAR ddPTM_HeLa_A485_30min_R1 2 LLSRPQDALEGVVLSPSLEAR 21 1 Q9NVI7-3;Q9NVI7-2;Q9NVI7 Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A 1 0 LLSRPQDALEGVVLS(0.974)PS(0.026)LEAR;LLSRPQDALEGVVLS(0.967)PS(0.033)LEAR ; 165.92 6.95E-14 171285000 98483 116795 84902 100202 86791 116868 118007 123244 93143 178976 TRUE FALSE FALSE 120390.2036 130453.1593 116310.7829 105675.7815 78149.7833 122987.0278 92793.84042 93018.21576 111835.9457 134360.577 0.89602327 0.970918421 0.865661532 0.78650884 0.581642213 0.915350548 0.690632941 0.69230289 0.832356843 1 17.03575037 -5.11618823 3.109741229 0.765549974 0.931561418 0.202218946 0.114092115 0.332707566 6.089694275 0.030614295 0.060130124 7.65E-06 5.11618823 0.166011445 LLSRPQDALEGVVLS(ph)PSLEAR ddPTM_HeLa_A486_30min_R1 2 LLSRPQDALEGVVLSPSLEAR 21 1 Q9NVI7-3;Q9NVI7-2;Q9NVI7 Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A 1 0 LLSRPQDALEGVVLS(0.925)PS(0.075)LEAR;LLSRPQDALEGVVLS(0.95)PS(0.05)LEAR ; 88.413 0.00060327 125980000 85059 98223 100947 34475 130697 92770 95093 89252 116654 105680 TRUE FALSE FALSE 79096.80335 90439.45176 140036.3819 80259.54227 114303.7636 81324.98062 71299.72561 68931.26796 126765.6626 79217.04014 0.998482185 1.141666636 1.767755796 1.013160074 1.442918889 1.026609685 0.900055411 0.870157075 1.600232253 1 16.27352318 -6.286401602 24.05705349 1.06008595 1.278585202 0.10351107 0.281446287 1072.819849 1033913.268 0.098553377 0.086959606 5.17E-07 6.286401602 0.218499251 LLSSES(ph)EDEEEFIPLAQR ddPTM_HeLa_A485_30min_R1 3 LLSSESEDEEEFIPLAQR 18 0 Q96AY2;Q96AY2-2;D6RIT8;F8W714 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 LLS(0.005)S(0.005)ES(0.99)EDEEEFIPLAQR;LLS(0.015)S(0.015)ES(0.969)EDEEEFIPLAQR;LLSS(0.016)ES(0.984)EDEEEFIPLAQR ;; 197.15 4.30E-25 62545000 33640.9 50382.5 50300.7 40728.1 60333 45184.1 62940 68015 41150.5 52087.6 TRUE FALSE FALSE 41124.20215 56274.29511 68909.02212 42952.97297 54326.03468 47549.86961 49492.35483 51334.21461 49409.0279 39103.11992 1.051685958 1.439125451 1.762238467 1.098453859 1.389301795 1.216012167 1.265688132 1.312790762 1.263557179 1 15.2549961 -10.10536434 0.257062679 0.781099769 1.378325508 0.207367862 0.186528303 26.14882489 1.526929498 4.312838505 0.299948822 7.85E-11 10.10536434 0.597225739 LLSSES(ph)EDEEEFIPLAQR ddPTM_HeLa_A486_30min_R1 2 LLSSESEDEEEFIPLAQR 18 0 Q96AY2;Q96AY2-2;D6RIT8;F8W714 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 LLS(0.002)S(0.022)ES(0.975)EDEEEFIPLAQR;LLSS(0.003)ES(0.997)EDEEEFIPLAQR ; 162.29 5.34E-12 78161000 53864 67477 52777 19148.6 70375 55334 58650 57894 59143 58702 TRUE FALSE FALSE 50088.41175 62129.87677 73213.66782 44578.90852 61547.91128 48507.45367 43975.14966 44712.80002 64269.56286 44002.63711 1.138304771 1.411958029 1.663847274 1.013096292 1.398732333 1.102376059 0.999375323 1.016139099 1.460584344 1 15.42530237 -5.795114629 1.379548937 1.119548738 1.375864062 0.182834998 0.207249324 0.680516057 2.70883081 0.080913559 0.109746678 1.60E-06 5.795114629 0.256315325 LLSSNEDDANILSS(ph)PTDR ddPTM_HeLa_A485_30min_R1 2 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLSSNEDDANILS(0.003)S(0.995)PT(0.002)DR;LLSSNEDDANILS(0.19)S(0.762)PT(0.049)DR ; 218.79 2.49E-34 346610000 296595 412740 412157 299789 511602 369707 498057 546314 407250 453533 TRUE FALSE FALSE 362571.5345 461006.3526 564631.0256 316165.714 460665.1085 389064.2868 391643.0532 412329.6349 488981.3395 340475.5698 1.064897357 1.354007141 1.658359882 0.928600293 1.353004883 1.14270838 1.150282393 1.211040296 1.436171587 1 18.37719176 -5.269752016 24.99650802 1.188435829 1.358580034 0.158805808 0.19278865 1208.57834 3634253.33 0.053292709 0.080554396 5.37E-06 5.269752016 0.170144205 LLSSNEDDANILSS(ph)PTDR ddPTM_HeLa_A486_30min_R1 2 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLSSNEDDANILS(0.037)S(0.963)PTDR;LLSSNEDDANILS(0.004)S(0.99)PT(0.006)DR ; 346.99 3.75E-115 579640000 569870 660860 574520 195158 693630 564210 616770 619370 492670 515940 TRUE FALSE FALSE 529925.0558 608491.0468 796989.5302 454337.6867 606628.4576 494603.5067 462447.6225 478352.9718 535375.0323 386745.2658 1.370217305 1.573363918 2.060760921 1.174772459 1.568547856 1.278887036 1.195742168 1.236868332 1.384309207 1 18.56102411 -5.985218928 1.165622297 1.218824157 1.620292039 0.354353491 0.225484811 0.543745802 1.557661147 0.102847232 0.120218701 1.03E-06 5.985218928 0.401467882 LLSSS(ph)LTADCSLR ddPTM_HeLa_A485_30min_R1 2 LLSSSLTADCSLR 13 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLSS(0.01)S(0.971)LT(0.019)ADCSLR;LLSS(0.02)S(0.959)LT(0.02)ADCSLR ; 153.32 4.17E-08 245570000 296520 329570 320150 280660 387210 273770 338150 342030 256780 298860 TRUE FALSE FALSE 362479.851 368110.3446 438586.8076 295991.7451 348658.0128 288104.1739 265901.4901 258146.6062 308313.3907 224359.7021 1.615619238 1.640715071 1.954837716 1.319273213 1.554013531 1.284117295 1.185157083 1.15059257 1.37419237 1 17.77545405 -5.966851925 0.994278549 1.176531802 1.71524158 0.659165268 0.157126087 0.327669005 0.699631313 0.077661334 0.09586416 1.08E-06 5.966851925 0.538709778 LLSSS(ph)LTADCSLR ddPTM_HeLa_A486_30min_R1 3 LLSSSLTADCSLR 13 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLSS(0.007)S(0.991)LT(0.001)ADCSLR;LLSS(0.014)S(0.963)LT(0.023)ADCSLR;LLSS(0.013)S(0.985)LT(0.002)ADCSLR ;; 206.45 1.14E-21 207959000 507110 588180 541830 190570 609700 504360 542350 548770 430250 535810 TRUE FALSE FALSE 471564.2077 541570.4747 751641.0867 443656.5909 533225.7408 442137.1912 406648.2936 423827.0506 467544.4164 401639.6885 1.174097633 1.348398802 1.871431306 1.104613422 1.327622135 1.100830431 1.012470394 1.055241956 1.164089182 1 18.61554231 -5.928304899 1.505561989 1.064241824 1.430503978 0.384288175 0.192784446 0.413892065 1.935386942 0.077227319 0.091461343 1.18E-06 5.928304899 0.366262154 LLSSSLTADCSLRS(ph)PSGR ddPTM_HeLa_A485_30min_R1 4 LLSSSLTADCSLRSPSGR 18 1 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLSSS(0.001)LT(0.002)ADCS(0.303)LRS(0.682)PS(0.012)GR;LLSSSLTADCS(0.005)LRS(0.994)PS(0.001)GR;LLSSSLTADCSLRS(1)PSGR;LLSSSLTADCS(0.001)LRS(0.933)PS(0.066)GR ;;; 245.82 6.76E-46 1608570000 485513 763730 766610 517176 999850 803200 806300 1069840 698839 724967 TRUE FALSE FALSE 593513.6918 853041.5799 1050210.94 545428.0153 900301.4233 845254.31 634027.4181 807460.0626 839089.5772 544246.0689 1.090524536 1.567382162 1.929661968 1.002171713 1.654217595 1.553073799 1.164964626 1.483630491 1.541746693 1 19.05389956 -10.77027363 2.431119397 0.875500383 1.450506568 0.19726915 0.267734085 31540146.01 20997693.58 23365663.19 0.065676783 1.70E-11 10.77027363 0.575006184 LLSSSLTADCSLRS(ph)PSGR ddPTM_HeLa_A486_30min_R1 2 LLSSSLTADCSLRSPSGR 18 1 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLSSSLTADCS(0.082)LRS(0.887)PS(0.03)GR;LLSSSLTADCSLRS(1)PSGR ; 140.17 4.91E-07 440730000 213982 273696 301825 127848 422250 293651 318151 347157 255209 305714 TRUE FALSE FALSE 198982.9668 252007.3322 418699.7232 297636.6051 369287.4677 257423.3252 238546.2547 268116.9295 277330.7216 229161.2245 0.86830993 1.099694474 1.827096726 1.298808757 1.611474491 1.123328459 1.040953832 1.169992568 1.210199161 1 17.80600343 -6.46669292 24.88813304 1.114121841 1.353827964 0.176578433 0.249886675 516.7388464 228895.0687 0.092265477 0.081370145 3.41E-07 6.46669292 0.239706123 LLSVKGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LLSVKGSPK 9 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LLSVKGS(1)PK;LLS(0.063)VKGS(0.937)PK ; 111.96 0.011372 1407920000 2105590 2172900 1300500 3065510 2590220 2720790 4419990 4555450 1720990 3805310 TRUE FALSE FALSE 2573971.231 2427001.753 1781609.068 3232971.049 2332328.602 2863246.357 3475623.029 3438218.745 2066376.907 2856716.249 0.901024466 0.849577467 0.623656294 1.131708846 0.816436915 1.002285879 1.216649722 1.203556267 0.723339922 1 21.44592631 -5.690060495 1.268038198 1.04276613 0.8148597 0.180194982 0.172208393 0.709245721 2.385372187 0.068097875 0.105260389 2.04E-06 5.690060495 -0.22790643 LLSVKGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LLSVKGSPK 9 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LLSVKGS(1)PK;LLS(0.002)VKGS(0.998)PK ; 84.365 0.0025587 3300300000 6129400 4900700 2213700 3892300 4692400 5667000 8729200 7735500 3547700 11241500 TRUE FALSE FALSE 5699760.712 4512350.684 3070903.925 9061471.106 4103835.437 4967863.158 6545061.832 5974295.515 3855217.492 8426555.23 0.676404599 0.535491735 0.364431709 1.075347026 0.487012228 0.589548519 0.776718559 0.708984318 0.457508126 1 23.00651155 -11.06182104 2.534219097 1.52531034 0.633878665 0.254799367 0.189649677 16439016.82 4977561.643 50035238.64 0.046899563 8.67E-12 11.06182104 -0.891431675 LLSVNIR ddPTM_HeLa_A485_30min_R1 1 LLSVNIR 7 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 0 106.42 0.024358 51544000 54674 70198 75627 58378 88377 66013 91659 97187 76930 87773 FALSE FALSE TRUE 66836.04268 78407.04546 103604.5744 61567.04232 79577.87557 69469.3386 72075.30586 73351.73587 92369.14536 65892.80644 1.014314707 1.189918137 1.572319954 0.934351497 1.207686846 1.054278037 1.093826622 1.113197932 1.401809247 1 16.00783335 LLSVNIR ddPTM_HeLa_A486_30min_R1 2 LLSVNIR 7 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 0 ; ; 138.37 0.0039574 93792000 126304 158041 144042 52452 182979 148752 170389 164854 149690 151103 FALSE FALSE TRUE 117450.7418 145517.2556 199818.92 122110.9068 160028.0676 130400.4906 127755.87 127320.3429 162665.2497 113265.8253 1.036947743 1.284741052 1.764158955 1.078091353 1.412853941 1.151278334 1.127929538 1.124084362 1.436137064 1 16.78935311 -6.278140939 23.95897508 1.173143846 1.325409474 0.106606064 0.212191303 1158.812793 1662351.52 0.074614111 0.066007994 5.27E-07 6.278140939 0.152265628 LLT(ph)PTHSFLAR ddPTM_HeLa_A485_30min_R1 5 LLTPTHSFLAR 11 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LLT(0.997)PT(0.003)HSFLAR;LLT(0.986)PT(0.014)HSFLAR;LLT(0.995)PT(0.005)HSFLAR;LLT(0.982)PT(0.018)HSFLAR;LLT(0.988)PT(0.012)HSFLAR ;;;; 188.15 1.37E-10 1905965000 1448212 1548802 1406166 1737505 2426023 1688263 2062674 2299781 1546055 2224673 TRUE FALSE FALSE 1770361.763 1729920.921 1926365.319 1832420.499 2184479.632 1776657.84 1621966.849 1735756.104 1856334.057 1670102.963 1.060031508 1.035816928 1.153441052 1.097190137 1.307990992 1.063801382 0.971177757 1.039310834 1.11150875 1 20.67150562 -6.510142583 24.96677072 1.031448701 1.131082615 0.282046044 0.076264026 859.1311912 1684164.679 0.028944729 0.024321252 3.09E-07 6.510142583 0.099633915 LLT(ph)PTHSFLAR ddPTM_HeLa_A486_30min_R1 3 LLTPTHSFLAR 11 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LLT(1)PTHSFLAR;LLT(0.984)PT(0.016)HSFLAR;LLT(0.866)PT(0.134)HSFLAR ;; 213.06 2.41E-15 2454890000 1596960 1653970 1228300 610490 1843050 1613120 1776830 1800000 1321880 1885120 TRUE FALSE FALSE 1485021.351 1522903.394 1703930.655 1421251.572 1611877.483 1414109.655 1332248.341 1390179.294 1436461.623 1413073.682 1.050915723 1.077723981 1.205832843 1.005787307 1.140688914 1.000733135 0.94280175 0.983798164 1.016551112 1 20.43040526 -6.373202374 5.794374156 0.983002763 1.095930958 0.510741369 0.052617537 0.189833337 8.510700342 0.018387317 0.016142127 4.23E-07 6.373202374 0.112928195 LLT(ph)PTQSSLAR ddPTM_HeLa_A485_30min_R1 1 LLTPTQSSLAR 11 0 Q96T17-2 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LLT(0.866)PT(0.133)QSSLAR 82.069 0.028264 228110000 184810 227070 198150 215940 344370 203520 256810 257600 199850 258470 TRUE FALSE FALSE 225920.3469 253623.8613 271453.9307 227736.2554 310083.3136 214175.9925 201940.4456 194423.1961 239958.0619 194038.1858 1.164308695 1.307082213 1.3989717 1.173667206 1.598053045 1.103782699 1.040725282 1.001984199 1.236653811 1 17.56598107 -6.489641291 24.70424793 1.070327225 1.325390318 0.487978747 0.129313208 461.5722328 343071.1032 0.043663456 0.038479236 3.24E-07 6.489641291 0.255063093 LLT(ph)PTQSSLAR ddPTM_HeLa_A486_30min_R1 2 LLTPTQSSLAR 11 0 Q96T17-2 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LLT(0.915)PT(0.077)QS(0.004)S(0.005)LAR;LLT(0.98)PT(0.02)QSSLAR ; 137.88 7.03E-05 320790000 534250 588020 431010 249620 696630 573930 664380 626930 435610 597460 TRUE FALSE FALSE 496801.8339 541423.1537 597908.6148 581127.9751 609252.1696 503124.3519 498145.0969 484191.7248 473369.0255 447852.1272 1.109298815 1.208932862 1.335058111 1.297588958 1.360386906 1.123416238 1.11229816 1.081141956 1.056976169 1 18.77266293 -6.445350638 4.966840269 1.074735644 1.265024866 0.642520312 0.070748608 0.158516722 7.01615129 0.027602646 0.023855238 3.59E-07 6.445350638 0.190289221 LLTQYILNLGK ddPTM_HeLa_A486_30min_R1 1 LLTQYILNLGK 11 0 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 0 0 178.08 3.74E-09 0 4762.9 6015 4464.9 3045.4 6178.1 5642.3 7637.7 6661.2 4689.1 6955.2 FALSE FALSE TRUE 4429.045306 5538.349494 6193.828854 7089.845106 5403.18509 4946.210393 5726.666677 5144.590173 5095.554963 5213.572649 0.849522123 1.062294489 1.188020053 1.359882289 1.036369003 0.948718034 1.098415053 0.986768675 0.977363376 1 12.34805662 -5.981205306 24.99764596 1.005781377 1.126607649 0.154659695 0.123345379 462.686874 615387.7752 0.040877869 0.046344358 1.04E-06 5.981205306 0.120826272 LLTSFLPAQLLR ddPTM_HeLa_A485_30min_R1 2 LLTSFLPAQLLR 12 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;H0YFX4 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ; ; 317.03 3.11E-76 243450000 139467 140939 99414 145375 97387 149775 182643 158935 109163 296640 FALSE FALSE TRUE 170490.953 157420.59 136191.3756 153316.4681 87690.80833 157616.9874 143619.831 119955.942 131071.0128 222693.1073 0.765587023 0.706894757 0.611565294 0.688465261 0.393774237 0.707776677 0.64492266 0.538660327 0.588572383 1 17.76469738 -10.61793404 7.762061595 1.000406507 0.624432796 0.554856558 0.100101206 0.000712583 3.51E-05 0.098078557 0.023763081 2.41E-11 10.61793404 -0.375973711 LLTSFLPAQLLR ddPTM_HeLa_A486_30min_R1 2 LLTSFLPAQLLR 12 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;H0YFX4 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ; ; 328.65 2.15E-91 192629000 96477 118586 144175 30815 184879 135814 115936 111141 170646 182187 FALSE FALSE TRUE 89714.46051 109188.8135 200003.4211 71738.8773 161689.7519 119058.6495 86927.58655 85836.62049 185437.7327 136566.1894 0.656930247 0.799530352 1.464516379 0.525304818 1.183966197 0.871801799 0.636523483 0.628534932 1.357859757 1 17.05924082 -6.49589815 24.40901051 0.857543802 0.936793143 0 0.312726423 3658.888887 3310157.496 0.108899305 0.095745542 3.19E-07 6.49589815 0.07924934 LLTWVIGTGSPR ddPTM_HeLa_A485_30min_R1 1 LLTWVIGTGSPR 12 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 95.483 0.017788 10691000 9263.4 12570 9362.5 12059 16927 13576 15627 14150 10592 18279 FALSE FALSE TRUE 11324.01137 14039.95216 12826.07836 12717.75263 15241.68845 14286.81837 12288.16379 10679.69031 12717.71724 13722.3817 0.825222007 1.023142517 0.934683107 0.926789016 1.110717423 1.041132558 0.89548331 0.778267982 0.926786437 1 13.74424328 -10.21315584 4.639772076 1.000012509 0.944026147 0.033829367 0.093863334 1.30E-05 2.21E-06 0.09760513 0.023667433 6.12E-11 10.21315584 -0.055986362 LLTWVIGTGSPR ddPTM_HeLa_A486_30min_R1 2 LLTWVIGTGSPR 12 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 184.71 5.00E-09 19338200 22497.8 22110.3 18163.6 9875.8 24891.9 24236 29039.5 25212.7 17703 28693 FALSE FALSE TRUE 20920.8204 20358.1993 25197.03236 22991.3615 21769.72579 21246.00873 21773.50995 19472.3186 19237.51029 21508.08604 0.972695588 0.946537003 1.171514393 1.068963619 1.012164716 0.987814941 1.012340657 0.90534874 0.89443153 1 14.39259153 -6.914835623 1.55019612 0.927076435 1.036374619 0.282605475 0.064643729 0.513824453 2.449872009 0.043672937 0.022803685 1.22E-07 6.914835623 0.109298184 LLVACCLADIFR ddPTM_HeLa_A486_30min_R1 1 LLVACCLADIFR 12 0 Q9NTI5-2;Q9NTI5;H0Y9L9;Q9NTI5-4;Q9NTI5-3;Q29RF7-3;Q29RF7 Q9NTI5-2;Q29RF7 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A 0 0 134.68 0.0010003 2636000 2205.4 2813.8 2959.2 844.52 2554.1 2756.3 2826.4 3111 2810 2682.3 FALSE FALSE TRUE 2050.812849 2590.82424 4105.08149 1966.08524 2233.740962 2416.25573 2119.204825 2402.693213 3053.573063 2010.634621 1.019982859 1.288560444 2.041684475 0.977843124 1.110963145 1.201737852 1.053997978 1.19499246 1.518711073 1 10.97343522 LLVATTFTHSYPFCWR ddPTM_HeLa_A485_30min_R1 2 LLVATTFTHSYPFCWR 16 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 271.73 2.30E-54 103691000 54148 70831 74857 57277 84800 61542 78306 82662 47826 72961 FALSE FALSE TRUE 66193.03579 79114.0693 102549.7194 60405.89748 76357.01425 64764.24396 61575.2834 62389.01489 57424.23951 54773.16545 1.20849389 1.44439469 1.872262056 1.102837438 1.394058817 1.182408273 1.124187052 1.139043442 1.048400965 1 15.74118164 -6.208212565 0.958901655 1.064479881 1.468144181 0.419203026 0.187445255 0.554690423 1.090783867 0.109536275 0.105717296 6.19E-07 6.208212565 0.4036643 LLVATTFTHSYPFCWR ddPTM_HeLa_A486_30min_R1 2 LLVATTFTHSYPFCWR 16 0 A0A0A0MSX9;P41252;J3KR24 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 225.55 3.65E-25 103888000 40566 48747 55205 19719.9 64970 40556 55483 55518 47589 57172 FALSE FALSE TRUE 37722.53288 44884.11019 76581.85444 45908.92379 56820.85678 35552.61306 41600.56656 42877.76335 51714.05284 42855.75907 0.880220855 1.047329721 1.786967635 1.07124281 1.325862801 0.829587757 0.970711229 1.00051345 1.206700195 1 15.38720147 -6.249127581 24.812627 0.999610155 1.235578424 0.174229274 0.239485732 1260.192061 2539734.137 0.081615836 0.081035955 5.63E-07 6.249127581 0.235968269 LLVHLK ddPTM_HeLa_A485_30min_R1 2 LLVHLK 6 0 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 0 0 ; ; 78.002 0.025791 69361000 132808 162191 139729 130849 196347 179793 195501 234420 154826 193147 FALSE FALSE TRUE 162350.6814 181157.8266 191420.5717 137996.9495 176798.0033 189206.6835 153730.6143 176928.1274 185898.1581 144999.0075 1.119667536 1.249372873 1.32015091 0.951709615 1.21930492 1.304882611 1.06021839 1.220202334 1.282065038 1 17.1456835 -10.08180796 4.424020565 0.999986667 1.191428363 0.213091036 0.110657006 1.79E-05 3.71E-06 0.105828537 0.025664967 8.28E-11 10.08180796 0.191441696 LLVHLK ddPTM_HeLa_A486_30min_R1 2 LLVHLK 6 0 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 0 0 ; ; 87.758 0.018503 61979000 195698 187791 143995 61872 218173 180575 206111 203247 171071 213150 FALSE FALSE TRUE 181980.5808 172909.7572 199753.7203 144041.1428 190807.708 158297.4925 154539.8478 156972.095 185899.572 159775.8526 1.138974243 1.082202062 1.250212201 0.901520101 1.194221184 0.990747287 0.96722906 0.982451931 1.1635023 1 17.28568986 -5.252965947 24.99739739 1.030569376 1.149636747 0.289561096 0.092049403 856.3967654 2526441.461 0.024327692 0.041314619 5.59E-06 5.252965947 0.119067371 LLVHMGLLK ddPTM_HeLa_A485_30min_R1 2 LLVHMGLLK 9 0 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 0 ; ; 108.46 0.0024086 54989000 35995 44607 43696 35480 64019 33296 44556 47587 37473 46702 FALSE FALSE TRUE 44001.96357 49823.40062 59860.96874 37418.18256 57645.04358 35039.32707 35036.24661 35916.21364 44993.48738 35060.05089 1.255045628 1.421087516 1.707383966 1.06725979 1.64418026 0.999408905 0.999321043 1.024419895 1.283326357 1 15.09754047 -6.279385053 24.93770684 1.058948072 1.415589049 0.479841832 0.186185108 704.9805795 979653.7311 0.06333677 0.055969 5.26E-07 6.279385053 0.356640976 LLVHMGLLK ddPTM_HeLa_A486_30min_R1 1 LLVHMGLLK 9 0 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 0 114.93 0.0015701 22329000 37234 30066 19078 11644 27572 28114 29764 27714 23005 35207 FALSE FALSE TRUE 34624.08888 27683.46066 26465.51253 27107.82046 24113.66266 24645.58052 22316.73239 21404.12719 24999.09192 26390.93804 1.311968859 1.048976001 1.002825761 1.027163961 0.913709949 0.933865272 0.845621037 0.811040788 0.947260453 1 14.68775501 -1 0.556688712 0.89518656 19.92353918 0.802647172 0.058283405 57.13828431 0.513168955 0.02878672 1303.13493 0.1 1 19.02835262 LLVRPTSS(ph)ETPSAAELVSAIEELVK ddPTM_HeLa_A486_30min_R1 1 LLVRPTSSETPSAAELVSAIEELVK 25 1 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7 E7EPJ7 TRIO Triple functional domain protein 1 0 LLVRPT(0.241)S(0.241)S(0.392)ET(0.117)PS(0.008)AAELVSAIEELVK 179.17 6.45E-26 0 356290 383110 293130 210420 413770 397150 523410 466260 302490 406580 TRUE FALSE FALSE 331315.9109 352750.9683 406637.7863 489868.394 361871.1083 348153.6709 392447.2819 360102.7764 328710.0768 304769.7216 1.087102449 1.157434428 1.334246014 1.607339441 1.18735912 1.142349933 1.287684616 1.181556929 1.078552276 1 18.21736005 -7.762123449 1.065704393 0.99548697 1.271204313 0.289956191 0.137006761 0.670944829 1.592756394 0.140773743 0.047663475 1.73E-08 7.762123449 0.275717343 LLYDLADQLHAAVGASR ddPTM_HeLa_A485_30min_R1 1 LLYDLADQLHAAVGASR 17 0 H0YK49;H0YL12;H0YNX6;P13804-2;P13804 H0YK49 ETFA "Electron transfer flavoprotein subunit alpha, mitochondrial" 0 0 111.77 0.00012907 23961000 6909.3 7001.9 7275.3 6885 9279.9 6975.8 8480 9168.6 6888.1 12313 FALSE FALSE TRUE 8446.249948 7820.711297 9966.73622 7261.110116 8355.960572 7341.042101 6668.178725 6919.986474 8270.478489 9243.595704 0.913740737 0.846068083 1.078231517 0.785528743 0.90397296 0.794176026 0.721383641 0.748624961 0.894725251 1 13.17423845 -5.318456682 24.99984066 0.821391321 0.93602039 0.209840138 0.094991472 388.9783537 170550.7872 0.026345208 0.039076274 4.80E-06 5.318456682 0.114629069 LLYDLADQLHAAVGASR ddPTM_HeLa_A486_30min_R1 1 LLYDLADQLHAAVGASR 17 0 H0YK49;H0YL12;H0YNX6;P13804-2;P13804 H0YK49 ETFA "Electron transfer flavoprotein subunit alpha, mitochondrial" 0 0 183.56 5.54E-14 27966000 20171 26348 26230 5199.8 30874 20384 23469 22351 24037 21606 FALSE FALSE TRUE 18757.11706 24260.08852 36386.95846 12105.39718 27001.49503 17869.22933 17596.80797 17262.16522 26120.54651 16195.71697 1.15815293 1.497932359 2.246702541 0.747444353 1.667199735 1.103330551 1.086509971 1.065847548 1.612805816 1 13.98332472 -5.276758963 24.97940758 1.198845945 1.620629688 0.247103025 0.359772043 1155.386749 1883917.677 0.099366103 0.147999317 5.29E-06 5.276758963 0.421783742 LLYMHMLGYPAHFGQLECLK ddPTM_HeLa_A486_30min_R1 1 LLYMHMLGYPAHFGQLECLK 20 0 H3BS13;H3BV30;H3BRM7;H3BN71;B4DGE1;H3BR36;H3BUN9;H3BNR4;O43747;O43747-2 H3BS13 AP1G1 AP-1 complex subunit gamma-1 0 0 130.39 1.08E-07 3952500 6997.2 14117 12908 6278.6 18315 13442 16463 18924 11488 12839 FALSE FALSE TRUE 6506.732414 12998.31751 17906.32329 14616.8981 16017.76192 11783.66271 12343.78327 14615.41831 12483.78909 9624.030832 0.676092224 1.350610543 1.860584572 1.518791695 1.664350645 1.224399933 1.282600138 1.518637935 1.297147662 1 13.23242555 -8.02583344 16.80918757 0.999999975 1.406417312 0.13013588 0.297147964 58.29341151 37932.91352 0.29477926 0.076112186 9.42E-09 8.02583344 0.406417337 LLYSVQRPLHEFITAVQSR ddPTM_HeLa_A485_30min_R1 1 LLYSVQRPLHEFITAVQSR 19 1 Q86XI2;Q86XI2-2 Q86XI2 NCAPG2 Condensin-2 complex subunit G2 0 0 76.027 0.0047977 9689800 14608 14584 17835 23904 25975 10123 18274 17512 16696 32930 FALSE FALSE TRUE 17857.4992 16289.47194 24432.90868 25209.81499 23388.8378 10653.02463 14369.61062 13217.15454 20046.73406 24721.15703 0.722356934 0.658928379 0.988340014 1.019766792 0.946106113 0.430927428 0.581267721 0.534649512 0.81091407 1 14.59345865 -6.23950918 24.95155779 0.636824562 0.870751667 0.215029786 0.180755209 1075.847842 1224069.749 0.06099817 0.060947912 5.76E-07 6.23950918 0.233927104 LMALLGQALK ddPTM_HeLa_A485_30min_R1 2 LMALLGQALK 10 0 Q2TAY7 Q2TAY7 SMU1 "WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed" 0 0 ; ; 187.55 3.23E-09 31847000 70336 79926 71508 73445 92607 83369 109686 110066 68519 101027 FALSE FALSE TRUE 85982.00054 89272.65044 97961.7849 77457.11438 83386.72192 87734.07193 86250.69005 83072.14092 82270.13481 75842.82816 1.133686634 1.177074387 1.291642035 1.021284626 1.099467464 1.156787979 1.137229348 1.095319662 1.084745081 1 16.21072514 -7.200945809 0.019190068 5.97E-07 2.209379843 0.359633461 0.06248635 326.3630298 5.798025182 329.4621586 336.1379822 6.30E-08 7.200945809 2.209379246 LMALLGQALK ddPTM_HeLa_A486_30min_R1 2 LMALLGQALK 10 0 Q2TAY7 Q2TAY7 SMU1 "WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed" 0 0 ; ; 203.57 4.16E-14 28676000 75597 78791 61677 29410 88414 79578 93215 91406 64976 90989 FALSE FALSE TRUE 70298.04068 72547.31421 85559.98617 68467.9663 77324.29169 69760.47545 69891.62107 70594.84918 70608.172 68204.76216 1.03069109 1.063669338 1.254457657 1.003859029 1.133708105 1.022809453 1.024732275 1.035042817 1.035238153 1 16.05758485 -6.278566032 23.57307664 1.025827684 1.098952314 0.247463184 0.064177838 596.3258663 820777.7112 0.022420895 0.019832447 5.27E-07 6.278566032 0.07312463 LMATMFQNLFPSINVHK ddPTM_HeLa_A485_30min_R1 2 LMATMFQNLFPSINVHK 17 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;C9J3W3 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 0 0 ; ; 194.58 1.66E-18 29202000 40833 50696 43391 36655 62849 45091 66278 64803 36246 64758 FALSE FALSE TRUE 49916.15998 56624.4562 59443.13655 38657.36983 56591.53288 47451.89504 52117.16386 48909.96264 43520.23973 48615.02238 1.026764106 1.16475224 1.222731856 0.795173342 1.164075014 0.976074734 1.072038257 1.006066854 0.895201475 1 15.56911457 -5.218742111 24.9999922 0.997672396 1.140749665 0.308719574 0.102741717 605.2107973 354360.5885 0.026790695 0.046402469 6.04E-06 5.218742111 0.143077269 LMATMFQNLFPSINVHK ddPTM_HeLa_A486_30min_R1 3 LMATMFQNLFPSINVHK 17 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;C9J3W3 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 0 0 ;; ;; 213.51 5.15E-25 33778600 50681.1 47190.5 39624 10963.2 51302 44417.3 57435.5 50512.2 44450.6 51499.5 FALSE FALSE TRUE 47128.61661 43450.95292 54967.47397 25522.88365 44867.22479 38937.54513 43064.53041 39011.67473 48303.6138 38603.68999 1.22083191 1.125564756 1.423891705 0.661151399 1.16225223 1.00864827 1.115554767 1.010568543 1.251269343 1 15.23645114 -5.193850003 24.99999357 1.038546097 1.243642534 0.29237072 0.160943285 248.5830211 91945.07306 0.041757111 0.07232543 6.40E-06 5.193850003 0.205096437 LMDIS(ph)PFLPEK ddPTM_HeLa_A485_30min_R1 1 LMDISPFLPEK 11 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 LMDIS(1)PFLPEK 72.652 0.011894 27366000 19075 16459 18942 19250 33265 19701 26806 26650 23519 26520 TRUE FALSE FALSE 23318.16794 18383.73688 25949.43404 20301.57876 29953.0198 20732.5139 21078.67912 20114.04571 28239.04757 19909.05206 1.171234465 0.923385846 1.303398774 1.019715991 1.504492514 1.041361177 1.058748505 1.010296505 1.418402417 1 14.28113691 -10.310521 4.920819341 0.999937926 1.153367879 0.064897249 0.181406342 0.000118438 1.66E-05 0.168385446 0.040822966 4.89E-11 10.310521 0.153429953 LMDIS(ph)PFLPEK ddPTM_HeLa_A486_30min_R1 1 LMDISPFLPEK 11 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 LMDIS(1)PFLPEK 87.363 0.0031682 26651000 97031 106300 94229 37372 123530 102540 120130 115910 95041 90814 TRUE FALSE FALSE 90229.62797 97876.40086 130716.9923 87003.90468 108035.7155 89889.65735 90072.20339 89519.8233 103279.2304 68073.5833 1.325471991 1.437802979 1.920230815 1.27808616 1.587043171 1.320477827 1.323159426 1.31504497 1.51717047 1 16.05480743 -6.27675276 22.55723179 1.316610079 1.51566806 0.216316594 0.201983869 390.1344752 574680.2939 0.069547411 0.061647583 5.29E-07 6.27675276 0.199057981 LMEDLDR ddPTM_HeLa_A485_30min_R1 6 LMEDLDR 7 0 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 0 ;;;;; ;;;;; 229.64 1.52E-05 2093321000 1275180 1771120 1844080 1316830 1974550 1690950 1920780 1847270 1617820 1931780 FALSE FALSE TRUE 1558839.392 1978237.077 2526281.931 1388765.089 1777956.869 1779485.527 1510389.662 1394224.136 1942501.634 1450222.798 1.074896488 1.364091835 1.741995736 0.957621884 1.225988773 1.227042859 1.041488014 0.961386166 1.339450488 1 20.46784313 -5.291938847 24.99967706 1.113118357 1.390704681 0.319295232 0.19129084 810.7962798 664588.3924 0.054007161 0.080116344 5.11E-06 5.291938847 0.277586324 LMEDLDR ddPTM_HeLa_A486_30min_R1 6 LMEDLDR 7 0 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 0 ;;;;; ;;;;; 225.42 3.00E-05 2233577000 2063722 2468664 2133567 793303 3311576 2155810 2363530 2520318 2065646 2301070 FALSE FALSE TRUE 1919065.745 2273038.074 2959741.281 1846849.475 2896207.259 1889848.081 1772149.795 1946496.61 2244697.858 1724867.095 1.112587602 1.317804764 1.715924253 1.070719872 1.679090098 1.095648521 1.027412373 1.128490778 1.301374387 1 20.71805377 LMELHGEGSSS(ph)GK ddPTM_HeLa_A485_30min_R1 1 LMELHGEGSSSGK 13 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13 D6R9B6 RPS3A 40S ribosomal protein S3a 1 0 LMELHGEGS(0.04)S(0.176)S(0.784)GK 120.77 6.08E-05 212610000 183790 161080 127380 239400 173570 188230 238470 198690 169970 353260 TRUE FALSE FALSE 224673.4514 179916.9048 174503.1627 252477.8158 156288.7614 198085.4317 187518.9364 149960.966 204081.4199 265198.7833 0.847188847 0.678422814 0.658008912 0.952032331 0.589326842 0.746931903 0.707088223 0.565466267 0.769541313 1 18.01671463 -8.025938549 24.32342325 1.000000004 0.715631783 0.376677406 0.108375594 1943.814205 1822776.216 0.101399626 0.026181271 9.42E-09 8.025938549 -0.284368222 LMELHGEGSSS(ph)GK ddPTM_HeLa_A486_30min_R1 2 LMELHGEGSSSGK 13 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13 D6R9B6 RPS3A 40S ribosomal protein S3a 1 0 LMELHGEGS(0.017)S(0.051)S(0.933)GK;LMELHGEGS(0.079)S(0.363)S(0.558)GK ; 72.315 0.0070879 361130000 644600 589680 256530 271500 412370 699180 793060 642450 506180 940340 TRUE FALSE FALSE 599416.8687 542951.6092 355865.2861 632065.7209 360646.7094 612922.2803 594627.9999 496178.1596 550056.09 704872.7434 0.850390194 0.770283167 0.504864586 0.896708983 0.511647972 0.869550264 0.843596245 0.703925871 0.780362264 1 19.42700329 LMHNAS(ph)DS(ph)EVDQDDVVEWK ddPTM_HeLa_A485_30min_R1 5 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 2 0 LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK ;;;; 169.6 1.29E-12 672599000 439951 407780 347137 560598 459657 406443 531505 475885 389644 675281 TRUE FALSE FALSE 537816.5821 455466.3238 475557.4219 591222.0492 413891.9351 427723.727 417944.6148 359173.4576 467841.9768 506945.8743 1.060895471 0.898451584 0.938083227 1.166242945 0.816442062 0.843726616 0.824436367 0.708504548 0.922863762 1 18.9514722 -5.808001309 24.99997866 0.836229182 1.001968805 0.389544094 0.098225486 121.5952574 65286.10945 0.029792327 0.033781437 1.56E-06 5.808001309 0.165739623 LMHNAS(ph)DS(ph)EVDQDDVVEWK ddPTM_HeLa_A486_30min_R1 6 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 2 0 LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK ;;;;; 190.5 1.84E-18 1342260000 861170 888210 523369 337224 736881 921850 974430 939900 729137 1083650 TRUE FALSE FALSE 800806.4301 817825.0048 726031.4931 785074.5144 644454.5138 808121.5197 730617.3075 725905.2879 792339.1822 812296.9866 0.985854242 1.006805415 0.89380055 0.966487045 0.793373021 0.994859679 0.89944604 0.893645181 0.975430409 1 19.63164777 -4.753354977 24.97694128 0.921390597 0.996329859 0.173870747 0.059288868 262.9317852 812314.907 0.014229089 0.036258723 1.76E-05 4.753354977 0.074939262 LMHNAS(ph)DSEVDQDDVVEWK ddPTM_HeLa_A485_30min_R1 1 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LMHNAS(0.968)DS(0.032)EVDQDDVVEWK 195.7 2.73E-19 826310000 224560 237420 200450 303780 266960 248130 302310 266760 252810 415090 TRUE FALSE FALSE 274512.5973 265184.2037 274604.7964 320374.7322 240380.525 261121.7031 237718.9989 201336.6917 303546.6481 311615.7022 0.880933135 0.850997565 0.881229009 1.028108436 0.771400553 0.837960672 0.7628595 0.646105733 0.974105753 1 18.24940841 -5.81410184 24.99982843 0.811211103 0.904004862 0.095185244 0.1064597 186.6167604 88589.11804 0.032162498 0.036468882 1.53E-06 5.81410184 0.09279376 LMHNAS(ph)DSEVDQDDVVEWK ddPTM_HeLa_A486_30min_R1 2 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LMHNAS(0.83)DS(0.17)EVDQDDVVEWK;LMHNAS(0.888)DS(0.112)EVDQDDVVEWK ; 201.58 1.16E-25 1620240000 744860 742450 402750 220385 601600 689080 806930 694280 613560 876790 TRUE FALSE FALSE 692649.1605 683615.558 558705.586 513067.4176 526141.7183 604068.3157 605027.5792 536207.6 666743.8748 657236.0771 1.053881831 1.040136995 0.850083563 0.780644027 0.80053688 0.919104013 0.920563554 0.815852353 1.014466336 1 19.32605215 -4.754371549 24.25546256 0.876444746 1.047009573 0.408044854 0.075817372 99.46379512 341328.0177 0.019371714 0.04889168 1.76E-05 4.754371549 0.170564827 LMHNASDS(ph)EVDQDDVVEWK ddPTM_HeLa_A485_30min_R1 1 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LMHNAS(0.451)DS(0.549)EVDQDDVVEWK 79.347 0.0020226 725120000 157550 170600 145090 178720 182950 159230 185890 164260 171510 218850 TRUE FALSE FALSE 192596.454 190550.186 198764.8287 188483.0211 164734.8556 167567.0366 146173.0829 123974.9775 205930.4838 164294.7226 1.172261962 1.159807101 1.209806532 1.147225048 1.002678923 1.019917341 0.889700415 0.754588921 1.253421172 1 17.32592661 -5.798959624 2.281946636 0.963178711 1.18126008 0.369756033 0.117961857 0.302330254 3.229151928 0.039226268 0.048896068 1.59E-06 5.798959624 0.218081369 LMIEMDGTENK ddPTM_HeLa_A485_30min_R1 2 LMIEMDGTENK 11 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 285.74 3.65E-48 136294000 254410 260750 218240 360670 328230 299930 393600 376120 266800 489820 FALSE FALSE TRUE 311002.6268 291242.4443 298976.0577 380372.4888 295550.2687 315633.871 309504.1446 283875.9803 320344.3128 367716.8885 0.845766503 0.792029013 0.813060447 1.034416696 0.80374407 0.858361095 0.841691405 0.771996036 0.871171063 1 18.48823591 -11.51662803 1.747277525 2.219768224 0.847411904 0.304222186 0.068943674 2527563.549 156448.5306 12177085.71 0.018249787 3.04E-12 11.51662803 -1.372356321 LMIEMDGTENK ddPTM_HeLa_A486_30min_R1 1 LMIEMDGTENK 11 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 0 142.83 0.00097411 38367000 30545 37966 32450 15491 51420 32175 35209 31372 22132 27185 FALSE FALSE TRUE 28403.95323 34957.43589 45015.50904 36063.83087 44970.42413 28205.57563 26399.3358 24229.28045 24050.41958 20377.69906 1.393874409 1.715475128 2.209057505 1.76976953 2.206845042 1.384139375 1.295501309 1.189009632 1.180232347 1 14.31470354 -6.454666357 4.990152655 1.19895327 1.864900954 0.667292617 0.232536091 0.140266025 6.709971469 0.087085977 0.075017475 3.51E-07 6.454666357 0.665947684 LMKPPS(ph)PEHQSLDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR ddPTM_HeLa_A485_30min_R1 2 LMKPPSPEHQSLDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR 43 1 Q9Y6X9;Q9Y6X9-2;H7C1V1 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 LMKPPS(0.466)PEHQS(0.466)LDT(0.068)QQEGGEEEVGPVAQQAIAVAEPSTSECLR;LMKPPS(0.672)PEHQS(0.283)LDT(0.045)QQEGGEEEVGPVAQQAIAVAEPSTSECLR ; 80.859 0.00023558 226273000 56983 80650 74954 46117 109226 66565 102541 88305 72226 105465 TRUE FALSE FALSE 69658.67176 90081.31594 102682.6037 48636.25494 98351.07592 70050.24047 80632.27767 66648.06029 86721.0957 79174.51644 0.879811774 1.13775644 1.296914819 0.614291784 1.242206209 0.884757415 1.018412 0.841786768 1.095315761 1 16.27274853 LMKPPS(ph)PEHQSLDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR ddPTM_HeLa_A486_30min_R1 1 LMKPPSPEHQSLDTQQEGGEEEVGPVAQQAIAVAEPSTSECLR 43 1 Q9Y6X9;Q9Y6X9-2;H7C1V1 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 LMKPPS(0.942)PEHQS(0.056)LDT(0.003)QQEGGEEEVGPVAQQAIAVAEPSTSECLR 204.97 6.77E-31 140470000 48627 64090 52329 3571.9 72783 53184 79016 60303 54427 33707 TRUE FALSE FALSE 45218.49841 59011.27499 72592.19022 8315.563714 63653.87747 46622.69882 59245.36105 46573.32331 59144.77618 25266.5478 1.789658752 2.335549575 2.873055345 0.329113569 2.519294601 1.845234227 2.344814239 1.843280042 2.340833288 1 14.62494094 -10.91577501 2.572741735 0.379398301 2.022142429 0.181544046 0.652594955 7327371.426 4118133.853 27388057.76 0.157186499 1.21E-11 10.91577501 1.642744128 LMLLLEVISGERLPKPER ddPTM_HeLa_A485_30min_R1 4 LMLLLEVISGERLPKPER 18 2 O43707 O43707 ACTN4 Alpha-actinin-4 0 0 ;;; ;;; 178.12 7.94E-18 78130600 55436.8 69452.5 48599.2 35460 63403.2 62501.8 92524.3 133977.9 37197.1 64715.1 FALSE FALSE TRUE 67768.52491 77574.36572 66578.06646 37397.09001 57090.55479 65774.2976 72755.72745 101119.61 44662.21678 48582.81656 1.394907288 1.596744924 1.370403595 0.769759612 1.175118258 1.353859291 1.49756092 2.081386324 0.91930069 1 15.56815851 -6.54502534 4.868422779 1.462167474 1.258713809 0 0.358405793 0.615795521 38.35417128 0.140486031 0.111058748 2.85E-07 6.54502534 -0.203453666 LMLLLEVISGERLPKPER ddPTM_HeLa_A486_30min_R1 3 LMLLLEVISGERLPKPER 18 2 O43707 O43707 ACTN4 Alpha-actinin-4 0 0 ;; ;; 145.55 8.30E-10 15224900 40352.8 21402.9 15551 28013.6 36689.2 23337.8 32977.6 30842.8 13709.7 35334.8 FALSE FALSE TRUE 37524.2771 19706.85626 21572.76367 65217.07653 32087.29842 20458.61952 24726.25568 23820.56773 14898.06783 26486.73609 1.41671956 0.744027357 0.814474218 2.462254175 1.21144781 0.772409988 0.933533509 0.89933949 0.562472771 1 14.69298245 -6.17958972 5.43598653 0.834406882 1.338312641 0.235673243 0.449845851 0.380095972 19.05418613 0.15950193 0.159166345 6.61E-07 6.17958972 0.503905758 LMLLNMPGQLPQTLS(ph)SPSTR ddPTM_HeLa_A485_30min_R1 1 LMLLNMPGQLPQTLSSPSTR 20 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y7E9;Q59IT9;A0A2R8Y6W1;Q86WV8;A0A2R8YD74;A0A2R8YGX7 Q92574 TSC1 Hamartin 1 0 LMLLNMPGQLPQT(0.012)LS(0.492)S(0.492)PS(0.002)T(0.002)R 140.22 5.27E-08 44119000 49625 73217 72818 52037 79533 63698 68540 80672 54813 64786 TRUE FALSE FALSE 60663.91005 81779.09125 99756.40841 54879.64955 71614.41526 67033.12878 53895.86908 60887.06551 65813.46633 48636.0425 1.247303582 1.681450362 2.051079884 1.128374077 1.472455644 1.378260346 1.108146681 1.251891856 1.353183009 1 15.56973822 -5.287679468 24.99888913 1.261987045 1.662095317 0.421480712 0.223635323 724.787978 690502.6732 0.063331634 0.093969492 5.16E-06 5.287679468 0.400108272 LMLLNMPGQLPQTLS(ph)SPSTR ddPTM_HeLa_A486_30min_R1 1 LMLLNMPGQLPQTLSSPSTR 20 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y7E9;Q59IT9;A0A2R8Y6W1;Q86WV8;A0A2R8YD74;A0A2R8YGX7 Q92574 TSC1 Hamartin 1 0 LMLLNMPGQLPQT(0.002)LS(0.478)S(0.478)PS(0.021)T(0.021)R 88.992 0.00065365 49375000 87097 100880 100120 26379 110230 87847 90707 102500 81066 95253 TRUE FALSE FALSE 80991.95007 92885.9014 138889.1453 61411.64512 96403.92555 77009.3303 68011.1492 79162.98756 88092.86615 71401.02881 1.134324693 1.300904244 1.945198096 0.860094681 1.350175581 1.078546508 0.952523379 1.10870934 1.233775866 1 16.12365724 -5.296297364 24.99998993 1.09339298 1.444219253 0.355954657 0.231656698 686.4748816 492335.2514 0.065007354 0.09642627 5.05E-06 5.296297364 0.350826273 LMLLNMPGQLPQTLSS(ph)PSTR ddPTM_HeLa_A485_30min_R1 1 LMLLNMPGQLPQTLSSPSTR 20 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y7E9;Q59IT9;A0A2R8Y6W1;Q86WV8;A0A2R8YD74;A0A2R8YGX7 Q92574 TSC1 Hamartin 1 0 LMLLNMPGQLPQTLS(0.156)S(0.838)PS(0.003)T(0.003)R 159.26 9.69E-11 47342000 33207 45482 47700 32892 55804 40359 45885 49965 35626 40249 TRUE FALSE FALSE 40593.78259 50800.72426 65346.21496 34688.80667 50247.95782 42472.13483 36081.2949 37711.00541 42775.81142 30215.66503 1.343468117 1.681271096 2.16266016 1.148040483 1.662977061 1.405632965 1.19412546 1.248061407 1.415683268 1 14.88300907 -6.296629752 0.888299866 1.204530486 1.668884915 0.320532186 0.262676809 0.72877649 1.231291305 0.167559077 0.150026784 5.05E-07 6.296629752 0.464354429 LMLPDS(ph)PLVEEGR ddPTM_HeLa_A485_30min_R1 2 LMLPDSPLVEEGR 13 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 LMLPDS(1)PLVEEGR;LMLPDS(1)PLVEEGR ; 242.79 4.87E-35 194828000 177213 244169 241942 173072 243113 224581 236990 265990 191378 226986 TRUE FALSE FALSE 216633.4205 272722.4406 331446.4138 182526.4851 218907.8161 236339.7139 186355.1505 200755.5354 229785.8092 170402.5676 1.271303734 1.600459691 1.945078754 1.071148679 1.284650925 1.386949254 1.093617034 1.178125062 1.348487951 1 17.37858755 -5.28101094 24.94138514 1.209678285 1.605098677 0.494421864 0.189990115 657.5780528 837995.3279 0.053666217 0.079728017 5.24E-06 5.28101094 0.395420391 LMLPDS(ph)PLVEEGR ddPTM_HeLa_A486_30min_R1 3 LMLPDSPLVEEGR 13 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 LMLPDS(1)PLVEEGR;LMLPDS(1)PLVEEGR;LMLPDS(1)PLVEEGR ;; 128.95 2.37E-05 60880000 304660 393893 359772 159466 499188 418288 502726 530896 398138 459656 TRUE FALSE FALSE 283304.9073 362679.4841 499085.3534 371244.907 436575.1863 366683.8794 376938.6375 410022.5702 432648.9224 344555.1457 0.822233859 1.052602141 1.448491946 1.077461508 1.267069123 1.06422407 1.093986383 1.19000565 1.255673955 1 18.39437538 -4.388852566 3.994565033 1.178088653 0.827108522 0.427154816 0.123332841 0.202583802 5.042672305 0.029984771 0.15040734 4.08E-05 4.388852566 -0.350980132 LMLPDS(ph)PLVEEGRR ddPTM_HeLa_A485_30min_R1 2 LMLPDSPLVEEGRR 14 1 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 LMLPDS(1)PLVEEGRR;LMLPDS(1)PLVEEGRR ; 178 1.20E-13 161966000 54613 77342 73407 51457 78698 71041 72385 83357 61328 66467 TRUE FALSE FALSE 66761.47344 86386.47411 100563.304 54267.96561 70862.55079 74760.59691 56919.35342 62913.56505 73635.96707 49898.00013 1.337958901 1.731261251 2.015377445 1.087577968 1.420148114 1.498268402 1.140714122 1.260843418 1.475729826 1 15.60669437 -5.271413822 24.99930477 1.290409153 1.698505415 0.44304792 0.217857032 638.5462776 1600410.355 0.060995568 0.091682214 5.35E-06 5.271413822 0.408096263 LMLPDS(ph)PLVEEGRR ddPTM_HeLa_A486_30min_R1 1 LMLPDSPLVEEGRR 14 1 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 LMLPDS(1)PLVEEGRR 130.06 1.20E-05 90565000 31950 34150 29238 10493 39450 27796 34647 31606 29453 34539 TRUE FALSE FALSE 29710.46999 31443.82963 40559.73662 24428.23429 34501.81314 24366.81213 25977.95414 24410.00375 32006.00975 25890.20959 1.147556179 1.214506569 1.566605186 0.943531732 1.332620079 0.941159323 1.003389102 0.942827584 1.236220574 1 14.66011902 -5.938269776 1.435211264 1.026257554 1.26895273 0.244301312 0.171394131 0.555293498 2.365890316 0.06753683 0.079807299 1.15E-06 5.938269776 0.242695176 LMLSTSEYSQS(ph)PK ddPTM_HeLa_A485_30min_R1 6 LMLSTSEYSQSPK 13 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK;LMLSTSEYS(0.001)QS(0.999)PK ;;;;; 278.62 1.10E-53 1987040000 1608500 1633430 1273820 2555530 2137100 1733810 2472490 2523210 1235540 3068870 TRUE FALSE FALSE 1966305.276 1824445.43 1745059.026 2695132.133 1924322.82 1824589.611 1944222.313 1904388.791 1483501.545 2303857.187 0.853484012 0.791909082 0.757451042 1.169834722 0.835261331 0.791971664 0.843898799 0.826608872 0.643920792 1 21.13561986 -5.984463279 24.99998761 0.812052199 0.892030735 0.061868422 0.131155946 703.843037 1132541.168 0.041257455 0.046767805 1.04E-06 5.984463279 0.079978535 LMLSTSEYSQS(ph)PK ddPTM_HeLa_A486_30min_R1 3 LMLSTSEYSQSPK 13 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK;LMLSTSEYSQS(1)PK ;; 280.5 9.58E-49 1678080000 1636190 1424040 716600 927510 1221010 1516540 1983220 1749490 1000890 2513340 TRUE FALSE FALSE 1521501.53 1311193.884 994086.7112 2159290.154 1067859.54 1329444.714 1486997.38 1351169.318 1087647.951 1883983.305 0.807598202 0.695968951 0.52765155 1.146130196 0.56680945 0.705656314 0.789283735 0.717187522 0.577312946 1 20.84535475 -10.65143187 5.919545102 1.002351377 0.727926009 0.196984593 0.165949504 0.004986361 0.000293618 0.155581124 0.037449127 2.23E-11 10.65143187 -0.274425368 LMPS(ph)PLK ddPTM_HeLa_A485_30min_R1 4 LMPSPLK 7 0 Q8NI77 Q8NI77 KIF18A Kinesin-like protein KIF18A 1 0 LMPS(1)PLK;LMPS(1)PLK;LMPS(1)PLK;LMPS(1)PLK ;;; 98.033 0.0049989 195963000 995550 690030 686235 1571680 997670 757610 1113760 781730 830350 1991900 TRUE FALSE FALSE 1217006.663 770723.006 940101.8831 1657536.899 898338.4718 797277.2881 875796.0774 590009.4918 996993.6286 1495355.988 0.813857484 0.515411054 0.62868099 1.108456389 0.600752248 0.533168887 0.585677313 0.394561226 0.66672661 1 20.51205755 -8.050149283 22.87210994 1.000000002 0.642972884 0.244802062 0.184711492 8711.430627 3973107.182 0.187293696 0.048359024 8.91E-09 8.050149283 -0.357027118 LMPS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 LMPSPLK 7 0 Q8NI77 Q8NI77 KIF18A Kinesin-like protein KIF18A 1 0 LMPS(1)PLK;LMPS(1)PLK ; 83.948 0.0094 212420000 483580 558010 311048 230929 452340 603950 655860 578330 490550 668070 TRUE FALSE FALSE 449683.5392 513791.2554 431494.1158 537614.3825 395603.2993 529440.7895 491756.891 446656.8839 533071.269 500780.9236 0.897964595 1.025980087 0.861642478 1.073552041 0.789972782 1.057230347 0.981980079 0.891920724 1.064479983 1 18.93382008 LMPS(ph)PLKGQHTLK ddPTM_HeLa_A485_30min_R1 2 LMPSPLKGQHTLK 13 1 Q8NI77 Q8NI77 KIF18A Kinesin-like protein KIF18A 1 0 LMPS(1)PLKGQHTLK;LMPS(1)PLKGQHTLK ; 183.74 2.19E-17 1328950000 1653660 1523300 986650 1896860 1899320 1988880 2742000 2804800 1408200 2633500 TRUE FALSE FALSE 2021510.962 1701436.684 1351652.893 2000480.659 1710217.032 2093014.681 2156149.3 2116918.402 1690812.823 1977016.916 1.022505648 0.860608056 0.683683019 1.011868256 0.865049266 1.058673127 1.090607411 1.07076393 0.855234373 1 20.91489378 -6.25725118 24.86410346 1.024200493 0.882627888 0.257039789 0.106556753 447.5859251 2657189.06 0.036425872 0.035190899 5.53E-07 6.25725118 -0.141572605 LMPS(ph)PLKGQHTLK ddPTM_HeLa_A486_30min_R1 1 LMPSPLKGQHTLK 13 1 Q8NI77 Q8NI77 KIF18A Kinesin-like protein KIF18A 1 0 LMPS(1)PLKGQHTLK 71.697 0.0048783 590980000 642300 610510 351840 255550 571770 631310 784260 770610 516350 830650 TRUE FALSE FALSE 597278.0868 562130.9642 488081.8706 594933.3148 500053.2751 553425.3909 588029.8529 595158.9253 561107.6337 622649.8334 0.959251982 0.902804328 0.783878585 0.955486186 0.803105129 0.888822836 0.944398957 0.955848526 0.901160819 1 19.24806152 -6.734847467 4.938976064 0.947179559 0.87780981 0.253034674 0.057191588 0.275270526 16.73866025 0.022641719 0.0165873 1.84E-07 6.734847467 -0.069369748 LMPVSLSVQS(ph)PAALTAEK ddPTM_HeLa_A486_30min_R1 1 LMPVSLSVQSPAALTAEK 18 0 P54198 P54198 HIRA Protein HIRA 1 0 LMPVSLSVQS(1)PAALTAEK 198.98 3.87E-25 110970000 80695 89743 56602 24341 77623 80999 98334 92664 77727 99390 TRUE FALSE FALSE 75038.69721 82631.43784 78519.81025 56667.07813 67886.79953 71006.16692 73729.79313 71566.43004 84464.43894 74502.09708 1.007202484 1.109115596 1.053927518 0.760610511 0.911206559 0.953076084 0.989633796 0.960596182 1.133718946 1 16.18499341 -9.551992528 12.9643531 0.999999956 0.981630222 0 0.100197491 0 0 0.103470397 0.025095257 2.81E-10 9.551992528 -0.018369734 LMQITSLHSLNAFLLPIK ddPTM_HeLa_A485_30min_R1 3 LMQITSLHSLNAFLLPIK 18 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 0 0 ;; ;; 184.01 5.00E-18 30570500 54023.1 60921 59534 36832.8 74086 62519.4 82669 77507 37613.4 72629 FALSE FALSE TRUE 66040.35222 68045.18101 81558.10402 38844.8826 66709.73771 65792.81911 65006.09281 58498.28672 45162.06437 54523.92694 1.211217825 1.247987532 1.495822267 0.712437361 1.223494738 1.206677927 1.192248916 1.072892031 0.828298087 1 15.73460185 -5.77794103 0.278356951 0.944056688 1.366150636 0.190697419 0.192356523 6.795705806 0.878334488 0.290683399 0.958180953 1.67E-06 5.77794103 0.422093948 LMQITSLHSLNAFLLPIK ddPTM_HeLa_A486_30min_R1 2 LMQITSLHSLNAFLLPIK 18 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 0 0 ; ; 176.81 8.88E-18 17504800 31139 51327 47337 11410.6 59123 51686 60505 48259 57320 50925 FALSE FALSE TRUE 28956.3169 47259.66159 65667.15413 26564.45346 51707.24204 45309.50682 45366.00904 37271.47919 62288.54375 38173.04853 0.758553954 1.238037396 1.720249146 0.69589552 1.354548406 1.18695018 1.18843034 0.976382045 1.631741402 1 15.22026679 -4.260130202 23.17574745 1.221848734 0.75855355 0.189828074 0.286830698 67.20334042 1189271.072 0.067525379 0.405945575 5.49E-05 4.260130202 -0.463295184 LMS(ph)DVEDVSLENVHTR ddPTM_HeLa_A485_30min_R1 2 LMSDVEDVSLENVHTR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 LMS(1)DVEDVSLENVHTR;LMS(1)DVEDVSLENVHTR ; 154.48 2.10E-08 51507000 55498 59653 46492 73009 78160 59002 83290 72355 50075 87347 TRUE FALSE FALSE 67843.33863 66628.89944 63691.32549 76997.2968 70378.11596 62091.25349 65494.41108 54609.8228 60124.59318 65573.0004 1.034623065 1.016102649 0.971304121 1.174222566 1.073278873 0.946902736 0.998801499 0.832809578 0.916910814 1 16.00081429 -6.572432984 1.982110755 0.916790344 1.05199765 0.407284168 0.066921695 0.324896465 2.585201997 0.031820039 0.023436534 2.68E-07 6.572432984 0.135207306 LMS(ph)DVEDVSLENVHTR ddPTM_HeLa_A486_30min_R1 2 LMSDVEDVSLENVHTR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 LMS(1)DVEDVSLENVHTR;LMS(1)DVEDVSLENVHTR ; 219.23 7.32E-34 75567000 118474 100869 60273 41252 96923 91481 107089 111912 69289 100223 TRUE FALSE FALSE 110169.5844 92875.77308 83612.31977 96036.74076 84766.01357 80195.00433 80294.19953 86432.08062 75295.02631 75126.50846 1.466454207 1.236258346 1.112953623 1.27833361 1.128310304 1.067466144 1.06878652 1.150487124 1.002243121 1 16.19703443 -1 0.394676845 1.056257733 6.944020739 0.757530893 0.066725523 36.50876653 0.489199524 0.049421449 166.3979851 0.1 1 5.887763006 LMSLLTSPHQPPPPPPASASPSAVPNGPQS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LMSLLTSPHQPPPPPPASASPSAVPNGPQSPK 32 0 Q96RU3-5;Q96RU3-2;Q96RU3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 LMSLLTSPHQPPPPPPASASPS(0.002)AVPNGPQS(0.998)PK 133.95 1.19E-06 472940000 200260 274370 245590 230580 340440 263580 428030 375050 282430 384380 TRUE FALSE FALSE 244807.1461 306455.1848 336443.9609 243176.0015 306544.5982 277380.6412 336577.8938 283068.3994 339111.1104 288561.14 0.848371843 1.062011277 1.165936484 0.84271916 1.062321137 0.961254316 1.166400624 0.980965072 1.175179411 1 18.1385175 -6.736025515 24.9638403 1.079050142 0.998219579 0.140622664 0.108189226 493.0086339 484278.0114 0.040046014 0.031007752 1.84E-07 6.736025515 -0.080830563 LMSLLTSPHQPPPPPPASASPSAVPNGPQS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LMSLLTSPHQPPPPPPASASPSAVPNGPQSPK 32 0 Q96RU3-5;Q96RU3-2;Q96RU3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 LMSLLTSPHQPPPPPPASASPSAVPNGPQS(1)PK;LMSLLTSPHQPPPPPPAS(0.001)AS(0.003)PS(0.017)AVPNGPQS(0.979)PK ; 158.99 9.03E-11 1363800000 478340 445530 294050 96583 510600 489770 645160 602630 371530 610500 TRUE FALSE FALSE 444810.8362 410224.5802 407914.0349 224850.105 446555.7868 429347.157 483734.1442 465424.3043 403734.5195 457626.8263 0.97199467 0.896417248 0.891368275 0.491339432 0.975807713 0.938203646 1.057049361 1.017038944 0.882235254 1 18.8038121 -5.94274627 24.99999956 0.981767063 0.813018196 0.290229552 0.126843687 109.8173315 47951.25945 0.040648259 0.046090789 1.14E-06 5.94274627 -0.168748866 LMT(ph)PKPVSIATNR ddPTM_HeLa_A485_30min_R1 1 LMTPKPVSIATNR 13 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 LMT(0.999)PKPVS(0.001)IATNR 104.16 0.00055676 584620000 639520 446780 329600 954110 787460 648250 1010100 931920 494110 1249900 TRUE FALSE FALSE 781779.0177 499027.0345 451532.7558 1006230.613 709057.7175 682191.3676 794283.8832 703365.1588 593273.3448 938322.9327 0.83316627 0.531828667 0.481212534 1.072371332 0.755664913 0.727032607 0.846493095 0.749598176 0.632269898 1 19.839725 -14 0.222638308 2.294792715 0.706489732 0.183384694 0.160445124 284.053151 2.843921837 166.2592605 0.312391884 1.00E-14 14 -1.588302982 LMT(ph)PKPVSIATNR ddPTM_HeLa_A486_30min_R1 2 LMTPKPVSIATNR 13 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 LMT(1)PKPVSIATNR;LMT(1)PKPVSIATNR ; 126.19 3.42E-05 1544850000 1519420 1495480 741750 988310 1456440 1860370 2451210 2241860 1233940 2570310 TRUE FALSE FALSE 1412916.504 1376972.718 1028975.465 2300835.626 1273759.714 1630856.464 1837891.332 1731437.417 1340898.913 1926687.646 0.733339681 0.71468394 0.534064495 1.194192339 0.66111376 0.846456076 0.953912449 0.898660154 0.695960716 1 20.87769127 -5.217189279 24.99959583 0.879626725 0.666094876 0.330964703 0.150405551 563.0669541 318110.2258 0.039251389 0.067984925 6.06E-06 5.217189279 -0.213531849 LMT(ph)PTLSFLAR ddPTM_HeLa_A485_30min_R1 2 LMTPTLSFLAR 11 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 LMT(0.988)PT(0.009)LS(0.003)FLAR;LMT(0.997)PT(0.003)LSFLAR ; 167.84 2.19E-07 243440000 251142 230391 206938 287650 365880 271760 369850 372470 205441 367340 TRUE FALSE FALSE 307007.6715 257333.2233 283492.9776 303363.5911 329451.7025 285988.9334 290828.5261 281121.1485 246671.1243 275768.8984 1.113278812 0.933148099 1.028009247 1.100064557 1.194665912 1.037060144 1.054609594 1.019408462 0.894484932 1 18.07310023 -7.548532871 4.512109626 0.947129462 1.063203072 0.325031553 0.067656762 0.249498712 12.31528757 0.050551036 0.018692582 2.83E-08 7.548532871 0.11607361 LMT(ph)PTLSFLAR ddPTM_HeLa_A486_30min_R1 2 LMTPTLSFLAR 11 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 LMT(0.996)PT(0.004)LSFLAR;LMT(0.99)PT(0.01)LSFLAR ; 216.84 4.59E-17 251840000 291470 295330 217240 145508 364420 323010 392450 369120 244447 345690 TRUE FALSE FALSE 271039.4582 271926.9752 301361.1459 338749.9776 318711.0455 283160.3103 294254.8591 285079.4338 265635.8628 259126.9739 1.04597161 1.049396638 1.162986397 1.307274084 1.229941602 1.092747336 1.135562441 1.100153448 1.025118531 1 17.98329968 -7.626315413 1.318193584 0.997195697 1.154440718 0.337806062 0.074579177 0.556281602 1.805851936 0.07877507 0.025686673 2.36E-08 7.626315413 0.157245021 LMTGVIS(ph)PERR ddPTM_HeLa_A485_30min_R1 3 LMTGVISPERR 11 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 LMTGVIS(1)PERR;LMTGVIS(1)PERR;LMTGVIS(1)PERR ;; 215.09 1.70E-16 323360000 287974 343797 367228 294904 441021 306582 346429 298672 355186 434182 TRUE FALSE FALSE 352032.8228 384001.0685 503080.9188 311013.8588 397111.4007 322634.1595 272411.6141 225422.2237 426468.5722 325948.4179 1.080026174 1.178103796 1.543437216 0.954181219 1.218325903 0.989831954 0.835750687 0.691588642 1.308392828 1 18.31428415 -6.339814058 3.738134117 0.930630671 1.201284688 0.239238988 0.20204139 0.32392886 8.696356533 0.073792499 0.065186352 4.57E-07 6.339814058 0.270654017 LMTGVIS(ph)PERR ddPTM_HeLa_A486_30min_R1 3 LMTGVISPERR 11 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 LMTGVIS(1)PERR;LMTGVIS(1)PERR;LMTGVIS(1)PERR ;; 174.94 8.85E-09 491330000 563747 651591 606819 183260 739140 567532 614855 659190 543051 594932 TRUE FALSE FALSE 524231.2465 599956.5561 841795.568 426638.5414 646430.169 497515.6721 461011.7757 509106.827 590123.0979 445957.1548 1.175519309 1.345323311 1.887615343 0.956680562 1.449534248 1.115613163 1.033757998 1.141604797 1.32327308 1 18.76654558 -5.296560721 24.99918485 1.158412597 1.457070366 0.316177098 0.217371083 749.9729664 533825.159 0.060916965 0.090358385 5.05E-06 5.296560721 0.298657769 LMTPWEESNVMQDKDAPS(ph)PKPR ddPTM_HeLa_A485_30min_R1 3 LMTPWEESNVMQDKDAPSPKPR 22 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 LMTPWEESNVMQDKDAPS(1)PKPR;LMTPWEES(0.001)NVMQDKDAPS(0.999)PKPR;LMTPWEESNVMQDKDAPS(1)PKPR ;; 156.72 1.85E-10 2006900000 715400 484351 376805 1501100 812014 748748 1360560 1255820 617723 2014790 TRUE FALSE FALSE 874538.2619 540991.6362 516200.8497 1583101.292 731167.035 787951.2875 1069865.241 947828.176 741694.34 1512539.932 0.57819185 0.357670978 0.341280808 1.046650907 0.483403459 0.520945775 0.707330245 0.626646712 0.490363477 1 20.5285418 -14 0.20842724 2.969957458 0.514930398 0.307547041 0.191102127 189.5580253 1.887916129 156.5803699 0.428048031 1.00E-14 14 -2.45502706 LMTPWEESNVMQDKDAPS(ph)PKPR ddPTM_HeLa_A486_30min_R1 2 LMTPWEESNVMQDKDAPSPKPR 22 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 LMTPWEESNVMQDKDAPS(1)PKPR;LMTPWEESNVMQDKDAPS(1)PKPR ; 158.74 6.86E-11 1631290000 718120 680920 262765 529430 635340 989600 1274610 1185380 553490 1553120 TRUE FALSE FALSE 667783.4964 626961.4193 364514.6451 1232539.796 555649.7329 867513.2135 955689.0966 915494.8507 601466.9588 1164208.643 0.573594347 0.538530119 0.313100789 1.058693219 0.477276763 0.7451527 0.820891601 0.78636665 0.516631587 1 20.1509182 -8.781271691 0.064509976 1.643967579 2.57E-14 0.251087796 0.196363773 95.60175134 2.198949554 33.02060935 22.25599462 1.65E-09 8.781271691 -1.643967579 LMTPWEESNVMQDKDAPS(ph)PKPRLSPR ddPTM_HeLa_A485_30min_R1 1 LMTPWEESNVMQDKDAPSPKPRLSPR 26 3 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 LMTPWEESNVMQDKDAPS(0.5)PKPRLS(0.5)PR 214.74 1.39E-29 462210000 107590 203910 135480 115360 306130 418820 607500 1215500 198260 191890 TRUE FALSE FALSE 131523.0243 227755.5007 185599.6898 121661.8247 275650.6223 440748.7676 477702.6622 917396.7192 238048.9635 144055.3545 0.913003372 1.581027665 1.288391469 0.844549133 1.91350487 3.05957921 3.316104868 6.368362513 1.652482577 1 17.13626376 -6.212196257 2.322621339 3.499897312 1.199454243 0.290919372 1.354895309 0.32706124 3.466846447 0.498491133 0.475455491 6.13E-07 6.212196257 -2.300443069 LMVALAK ddPTM_HeLa_A485_30min_R1 6 LMVALAK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;;;; ;;;;; 143.22 0.0028509 596270000 1560466 1772911 1303112 1684281 1728584 2147111 2589210 2773840 1791864 2878460 FALSE FALSE TRUE 1907586.278 1980237.519 1785187.356 1776289.006 1556480.108 2259530.412 2036004.132 2093551.391 2151474.669 2160912.896 0.882768705 0.916389329 0.826126476 0.82200861 0.720288222 1.045636969 0.942196298 0.968827293 0.995632296 1 21.04320949 -6.275404115 24.99986382 0.985493886 0.837070464 0.683348412 0.053336115 532.8140526 953848.4023 0.019902461 0.017642635 5.30E-07 6.275404115 -0.148423422 LMVALAK ddPTM_HeLa_A486_30min_R1 4 LMVALAK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;; ;;; 143.22 0.0035888 601942000 1849380 2353600 1754860 722840 2507230 2353070 2541250 2751320 2142250 2736950 FALSE FALSE TRUE 1719748.012 2167092.164 2434388.789 1682808.05 2192749.834 2062772.148 1905402.371 2124904.497 2327941.955 2051599.905 0.838247266 1.056293753 1.186580669 0.820241825 1.06879993 1.005445624 0.928739744 1.035730452 1.134695877 1 20.96831798 -7.520797199 24.9313398 1.073303028 0.993388514 0.085306133 0.106996727 209.3506187 2507661.197 0.068370291 0.026734835 3.01E-08 7.520797199 -0.079914514 LMVELSK ddPTM_HeLa_A485_30min_R1 1 LMVELSK 7 0 B7ZAR1;E9PCA1;P48643 B7ZAR1 CCT5 T-complex protein 1 subunit epsilon 0 0 100.45 0.031369 24027000 23534 26447 25055 31164 36240 29441 36484 36646 24601 41123 FALSE FALSE TRUE 28769.05711 29539.74659 34323.88713 32866.41041 32631.81835 30982.48524 28688.89535 27658.51104 29538.19505 30871.79291 0.931888122 0.956852317 1.111820335 1.064609707 1.057010794 1.003585549 0.92929152 0.895915282 0.95680206 1 14.91400165 -6.655926617 4.274282613 0.936911055 1.027922137 0.313759255 0.054505144 0.258181035 8.409580527 0.023557341 0.017746652 2.21E-07 6.655926617 0.091011082 LMYEHNLQRT(ph)ACNMTYGSFGGVK ddPTM_HeLa_A485_30min_R1 1 LMYEHNLQRTACNMTYGSFGGVK 23 1 F8WCG5;A0A5F9ZGY2;A0A5F9ZHP5;A0A5F9ZH74;A0A5F9ZH37;A0A5F9ZHE7;A0A5F9ZH14;A0A5F9ZGX9;Q3SYG4-5;Q3SYG4-6;Q3SYG4-2;Q3SYG4-4;Q3SYG4-7;Q3SYG4-3;Q3SYG4 F8WCG5 BBS9 Protein PTHB1 1 0 LMY(0.126)EHNLQRT(0.813)ACNMT(0.021)Y(0.019)GS(0.021)FGGVK 63.69 0.017316 567650000 217410 262090 228080 202900 349080 260560 371040 385430 258770 324740 TRUE FALSE FALSE 265772.1044 292739.1456 312456.2832 213983.9132 314324.3695 274202.5187 291764.2729 290902.6882 310702.7654 243788.2944 1.090175823 1.200792459 1.281670574 0.877744823 1.289333314 1.124756705 1.19679361 1.193259459 1.274477785 1 17.89526933 LMYEHNLQRTACNMTYGSFGGVK ddPTM_HeLa_A486_30min_R1 2 LMYEHNLQRTACNMTYGSFGGVK 23 1 F8WCG5;A0A5F9ZGY2;A0A5F9ZHP5;A0A5F9ZH74;A0A5F9ZH37;A0A5F9ZHE7;A0A5F9ZH14;A0A5F9ZGX9;Q3SYG4-5;Q3SYG4-6;Q3SYG4-2;Q3SYG4-4;Q3SYG4-7;Q3SYG4-3;Q3SYG4 F8WCG5 BBS9 Protein PTHB1 0 0 ; ; 57.009 0.036284 996425000 709267 744933 549139 87255.2 715698 716915 777918 767108 634794 616703 FALSE FALSE TRUE 659551.046 685901.7961 761780.3273 203134.5152 625928.4832 628469.3164 583274.6884 592454.2542 689818.455 462276.5547 1.426745612 1.483747746 1.647888736 0.439422058 1.35401304 1.359509389 1.261744041 1.281601345 1.492220291 1 18.81839667 LNAS(ph)PAAR ddPTM_HeLa_A485_30min_R1 3 LNASPAAR 8 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LNAS(1)PAAR;LNAS(1)PAAR;LNAS(1)PAAR ;; 168.05 2.80E-05 4566870000 3391600 3632200 3946600 4125400 4615700 3354100 4266000 3516440 3855000 5311900 TRUE FALSE FALSE 4146049.719 4056954.194 5406611.572 4350760.156 4156144.701 3529715.49 3354534.25 2654027.576 4628663.14 3987741.088 1.039698824 1.017356469 1.355808076 1.091033761 1.042230328 0.885141591 0.841211647 0.665546613 1.160723085 1 21.92714031 -6.06657088 2.504293165 0.884313456 1.133983003 0.321094202 0.145928691 0.317168375 3.93231152 0.052133351 0.054504818 8.58E-07 6.06657088 0.249669547 LNAS(ph)PAAR ddPTM_HeLa_A486_30min_R1 3 LNASPAAR 8 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LNAS(1)PAAR;LNAS(1)PAAR;LNAS(1)PAAR ;; 146.79 0.00030355 3818300000 3507400 4102600 3270190 1243830 4066700 3709610 3828700 3749920 3682830 3751100 TRUE FALSE FALSE 3261549.372 3777495.035 4536495.147 2895699.1 3556616.566 3251956.035 2870718.764 2896145.076 4002060.67 2811800.144 1.159950638 1.343443645 1.613377521 1.029838165 1.264889531 1.156538825 1.020954057 1.029996773 1.423309077 1 21.42306262 -5.285121015 24.95242205 1.13537327 1.369375984 0.319210518 0.160579355 896.2411451 944332.7539 0.045003441 0.066793714 5.19E-06 5.285121015 0.234002714 LNCFLEQDLKLDIPTGT(ph)TPQRK ddPTM_HeLa_A485_30min_R1 1 LNCFLEQDLKLDIPTGTTPQRK 22 2 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LNCFLEQDLKLDIPT(0.02)GT(0.49)T(0.49)PQRK 100.27 0.00060068 1053000000 398230 368960 237180 610300 605230 585980 895920 1104000 368830 774630 TRUE FALSE FALSE 486814.8896 412106.6625 324922.7519 643639.1436 544971.1761 616661.0067 704499.373 833242.269 442850.7979 581528.997 0.837129175 0.708660556 0.558738693 1.1068049 0.937134999 1.060413169 1.211460437 1.432847327 0.761528316 1 19.14949161 -5.273547754 24.39791524 1.090517666 0.702224587 0.479708047 0.176570352 436.6847881 879902.5332 0.050232047 0.075177103 5.33E-06 5.273547754 -0.388293079 LNCFLEQDLKLDIPTGT(ph)TPQRK ddPTM_HeLa_A486_30min_R1 1 LNCFLEQDLKLDIPTGTTPQRK 22 2 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LNCFLEQDLKLDIPT(0.017)GT(0.491)T(0.491)PQRK 98.326 0.00078834 1259500000 99833 97775 41945 66598 103330 94818 135290 130390 59716 146430 TRUE FALSE FALSE 92835.22224 90026.95291 58187.22733 155043.5097 90369.38789 83120.3192 101439.011 100703.0434 64892.23096 109762.9749 0.845779028 0.820194177 0.530117076 1.412530134 0.823313945 0.757271013 0.924164192 0.917459129 0.591203282 1 16.74403196 -3.992211411 0.008179417 1.688574228 1.25E-06 0.007560986 0.228699603 125805.7439 148.3108676 14342.27957 16322.86241 0.00010181 3.992211411 -1.688572983 LNCFLEQDLKLDIPTGTT(ph)PQR ddPTM_HeLa_A486_30min_R1 1 LNCFLEQDLKLDIPTGTTPQR 21 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LNCFLEQDLKLDIPT(0.013)GT(0.187)T(0.8)PQR 119.45 2.94E-05 106670000 117790 124190 75535 65362 132130 123050 163880 156490 92828 164710 TRUE FALSE FALSE 109533.5293 114348.7321 104784.1749 152166.0392 115557.0233 107869.3421 122875.4907 120860.6432 100874.4058 123465.5439 0.887158682 0.92615906 0.84869164 1.232457529 0.935945525 0.873679722 0.995220907 0.9789018 0.817024755 1 16.91374895 LNCQVIGASVDSHFCHLAWVNTPK ddPTM_HeLa_A485_30min_R1 2 LNCQVIGASVDSHFCHLAWVNTPK 24 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 194.97 2.88E-35 162326000 78218 70300 71195 66508 108409 99747 128147 137885 71442 125998 FALSE FALSE TRUE 95617.32425 78520.97347 97532.99317 70141.16363 97615.41931 104969.5987 100767.3466 104068.4876 85779.7541 94589.01742 1.010871313 0.830127806 1.031123864 0.741536021 1.031995278 1.109744044 1.065317616 1.10021745 0.906868011 1 16.52938506 -5.963352899 24.99994851 1.0474288 0.904734882 0.31884794 0.094040347 184.1966154 125654.634 0.027508892 0.03119207 1.09E-06 5.963352899 -0.142693918 LNCQVIGASVDSHFCHLAWVNTPK ddPTM_HeLa_A486_30min_R1 2 LNCQVIGASVDSHFCHLAWVNTPK 24 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 184.34 1.78E-27 218960000 121008 193795 172889 17801.3 243030 223560 255240 215160 234440 168256 FALSE FALSE TRUE 112525.9641 178437.9784 239836.2509 41442.32603 212546.9112 195979.4402 191376.2523 166172.7649 254761.448 126123.6024 0.892187996 1.414786566 1.901596896 0.328585017 1.685227088 1.553868082 1.517370648 1.317538999 2.019934755 1 16.94447876 LNCS(ph)TSPEIFR ddPTM_HeLa_A485_30min_R1 1 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.403)T(0.298)S(0.298)PEIFR 64.199 0.021629 183950000 156420 216200 207440 174900 273280 190340 243770 176020 196840 284210 TRUE FALSE FALSE 191215.0894 241482.7093 284180.6883 184454.3441 246071.2837 200305.9081 191686.5481 132850.819 236343.9825 213361.6775 0.896201659 1.131799825 1.331920013 0.864514876 1.15330591 0.938809211 0.898411328 0.622655486 1.107715243 1 17.70294155 -6.450139188 3.958841421 0.879058219 1.080931811 0.179977723 0.168911879 0.346828445 10.40473883 0.062053861 0.052669626 3.55E-07 6.450139188 0.201873593 LNCS(ph)TSPEIFR ddPTM_HeLa_A486_30min_R1 3 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.441)T(0.279)S(0.279)PEIFR;LNCS(0.599)T(0.273)S(0.128)PEIFR;LNCS(0.333)T(0.333)S(0.333)PEIFR ;; 156.81 2.62E-07 201414000 597460 769630 598330 265114 828420 667300 739510 735400 681380 700690 TRUE FALSE FALSE 555581.1393 708641.7159 830019.3998 617198.7901 724511.8389 584975.3106 554476.7763 567965.4737 740442.567 525232.6633 1.057781014 1.349195824 1.580288999 1.175095978 1.379411239 1.113745111 1.055678397 1.081359773 1.409742042 1 19.00259711 -6.269684433 24.4638506 1.132413372 1.318327777 0.225515979 0.162786794 710.1788326 2107159.677 0.057003447 0.05114092 5.37E-07 6.269684433 0.185914405 LNCST(ph)SPEIFR ddPTM_HeLa_A486_30min_R1 1 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.121)T(0.604)S(0.275)PEIFR 132.79 0.00016311 164600000 345680 478930 376050 154750 502410 413960 436510 418380 402740 412230 TRUE FALSE FALSE 321449.6171 440977.8426 521666.631 360265.8206 439393.053 362889.824 327290.5811 323124.0072 437649.8275 309004.9248 1.040273443 1.427090014 1.688214617 1.165890223 1.421961327 1.174382008 1.059175938 1.045692095 1.41631991 1 18.23727031 -6.365285155 5.034403593 1.132359361 1.361297537 0.230305479 0.191748056 0.34336926 13.41023273 0.069072976 0.060587212 4.31E-07 6.365285155 0.228938176 LNCSTS(ph)PEIFR ddPTM_HeLa_A486_30min_R1 1 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.064)T(0.214)S(0.722)PEIFR 135.04 2.52E-05 59547000 153290 218790 184050 64561 212490 192130 195630 198170 175370 196910 TRUE FALSE FALSE 142545.1626 201452.2836 255319.089 150301.2707 185837.5228 168426.954 146681.3048 153051.017 190571.2128 147602.4543 0.965737076 1.364830175 1.729775363 1.01828436 1.259040872 1.14108505 0.993759254 1.036913768 1.291111409 1 17.17135719 LNCSTS(ph)PEIFRK ddPTM_HeLa_A486_30min_R1 1 LNCSTSPEIFRK 12 1 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.291)T(0.15)S(0.56)PEIFRK 60.918 0.016526 304980000 229970 241420 178250 114120 318130 236520 263620 295970 199120 301360 TRUE FALSE FALSE 213850.2906 222289 247273.1737 265677.1273 278227.169 207340.5672 197659.4877 228584.092 216379.8819 225897.4945 0.946669599 0.984025965 1.09462557 1.176095945 1.231652301 0.917852443 0.87499637 1.011892994 0.95786756 1 17.78530874 -6.302963605 24.99277368 0.948419813 1.086330983 0.382865701 0.085041441 593.1581347 357010.8056 0.033418111 0.029472374 4.98E-07 6.302963605 0.137911171 LNDGHFMPVLGFGTYAPAEVPK ddPTM_HeLa_A485_30min_R1 5 LNDGHFMPVLGFGTYAPAEVPK 22 0 P52895;B4DK69;S4R3P0;P52895-2;Q04828 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;;;; ;;;; 193.42 1.04E-28 284597000 237429 223554 197403 279507 316715 294809 399818 406110 229328 406956 FALSE FALSE TRUE 290244.2619 249696.6956 270430.5843 294775.7597 285181.7425 310244.7434 314393.6181 306510.8857 275352.0261 305509.3587 0.950033947 0.817312755 0.885179379 0.964866546 0.933463197 1.015499966 1.029080155 1.003278221 0.901288351 1 18.22085705 -5.455234444 1.747124711 0.987468549 0.875879009 0.453345355 0.047085981 0.311576332 1.89247797 0.015564023 0.027004275 3.51E-06 5.455234444 -0.11158954 LNDGHFMPVLGFGTYAPAEVPK ddPTM_HeLa_A486_30min_R1 3 LNDGHFMPVLGFGTYAPAEVPK 22 0 P52895;B4DK69;S4R3P0;P52895-2;Q04828 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;; ;; 196.18 8.87E-29 93319000 94249 101531 61120 44327.9 110806 110114 126956 122104 92961 148482 FALSE FALSE TRUE 87642.6318 93485.31379 84787.30085 103197.5914 96907.67826 96529.25424 95190.266 94303.58471 101018.9343 111301.1407 0.787436959 0.839931318 0.761782856 0.927192576 0.870680009 0.867280008 0.855249689 0.847283182 0.90761814 1 16.76410885 -14 0.085795819 1.476942954 0.721092811 0.624282498 0.039550274 160.9171679 0.965333438 14.26608336 1.125602283 1.00E-14 14 -0.755850143 LNDGHFMPVLGFGTYAPPEVPR ddPTM_HeLa_A485_30min_R1 3 LNDGHFMPVLGFGTYAPPEVPR 22 0 A0A0A0MSS8;P42330 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ;; ;; 204.18 2.29E-26 340577000 185883 224095 236499 178742 280572 250354 298179 358983 219162 267018 FALSE FALSE TRUE 227232.0321 250300.9609 323989.8216 188506.2229 252637.2665 263462.1483 234470.6208 270941.8564 263145.8031 200455.3267 1.133579415 1.248662059 1.616269455 0.94039019 1.260317053 1.31431852 1.169690148 1.351632111 1.312740387 1 17.61292123 -9.979557262 4.009494004 0.999979385 1.263061104 0.186160748 0.163557739 39456448.43 74061213.57 11445.63886 0.039875243 1.05E-10 9.979557262 0.26308172 LNDGHFMPVLGFGTYAPPEVPR ddPTM_HeLa_A486_30min_R1 3 LNDGHFMPVLGFGTYAPPEVPR 22 0 A0A0A0MSS8;P42330 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ;; ;; 230.54 6.25E-43 228152000 129967 154352 137168 66988 194400 143013 157093 154909 127834 157285 FALSE FALSE TRUE 120856.9845 142120.5854 190283.1231 155951.4494 170016.5393 125369.5101 117786.6698 119639.6023 138914.754 117899.8122 1.025082077 1.205435214 1.613939153 1.322745528 1.442042494 1.063356317 0.999040351 1.014756513 1.178244065 1 16.8472019 -6.281521254 20.51851641 1.048748831 1.331658399 0.448396015 0.149951029 80.10201489 81842.21382 0.055560499 0.049136297 5.23E-07 6.281521254 0.282909568 LNDPFQPFPGNDS(ph)PKEKDPEIFCDPFTSATTTTNK ddPTM_HeLa_A486_30min_R1 1 LNDPFQPFPGNDSPKEKDPEIFCDPFTSATTTTNK 35 2 B1AUU8;P42566;P42566-2 B1AUU8 EPS15 Epidermal growth factor receptor substrate 15 1 0 LNDPFQPFPGNDS(1)PKEKDPEIFCDPFTSATTTTNK 87.578 3.80E-05 267080000 38051 45014 17652 56863 42879 85435 109980 92000 38487 104770 TRUE FALSE FALSE 35383.8214 41446.9267 24487.32714 132379.9377 37500.71599 74894.89834 82461.84075 71053.60835 41823.08415 78534.91006 0.450548952 0.527751629 0.31180181 1.685619014 0.477503775 0.953651036 1.050002358 0.904739157 0.532541313 1 16.26104648 LNDS(ph)PTLK ddPTM_HeLa_A485_30min_R1 5 LNDSPTLK 8 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LNDS(0.968)PT(0.032)LK;LNDS(0.998)PT(0.002)LK;LNDS(0.996)PT(0.004)LK;LNDS(0.913)PT(0.087)LK;LNDS(0.965)PT(0.035)LK ;;;; 183.07 7.02E-06 6788440000 6193940 5488260 4134520 9379670 7968590 6525800 9948590 9133220 5308390 11955520 TRUE FALSE FALSE 7571760.584 6130064.265 5664051 9892057.622 7175209.2 6867480.797 7822992.474 6893283.475 6373735.182 8975228.889 0.843628689 0.682998099 0.631075939 1.102151014 0.799445818 0.765159405 0.871620387 0.768034282 0.710147369 1 23.0975173 -11.52970658 2.221815667 4.031513323 0.798331414 0.197119606 0.122801307 3718110.883 387890.2182 57386560.29 0.03263175 2.95E-12 11.52970658 -3.233181908 LNDS(ph)PTLK ddPTM_HeLa_A486_30min_R1 4 LNDSPTLK 8 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LNDS(0.994)PT(0.006)LK;LNDS(0.976)PT(0.024)LK;LNDS(1)PTLK;LNDS(0.999)PT(0.001)LK ;;; 198.45 2.15E-06 6858100000 10164600 10021900 5023830 4763080 9216600 10956400 14179500 13284600 7717400 14664800 TRUE FALSE FALSE 9452114.03 9227728.145 6969191.519 11088690.95 8060568.087 9604710.765 10631639.12 10259986.58 8386350.446 10992638.63 0.859858524 0.839446147 0.633987139 1.008737877 0.733269632 0.873740245 0.967159886 0.933350666 0.762906044 1 23.39003439 -6.515305134 24.21034608 0.911750052 0.815753946 0.167071815 0.106335128 451.7836194 1444217.534 0.038255756 0.030968291 3.05E-07 6.515305134 -0.095996107 LNEAQPSTIATS(ph)MRDSLIDSLT ddPTM_HeLa_A486_30min_R1 1 LNEAQPSTIATSMRDSLIDSLT 22 1 P56537-2;P56537 P56537-2 EIF6 Eukaryotic translation initiation factor 6 1 0 LNEAQPS(0.211)T(0.211)IAT(0.211)S(0.35)MRDS(0.018)LIDSLT 54.152 0.015282 57087000 51658 69955 65298 25941 93146 70669 89873 86735 71415 73471 TRUE FALSE FALSE 48037.04096 64411.51103 90583.13434 60391.95899 81462.76013 61950.57729 67385.82482 66987.33391 77605.3097 55073.38338 0.872236968 1.169557907 1.644771553 1.096572523 1.479167524 1.124873278 1.223564282 1.216328647 1.409125515 1 15.74906762 -9.317747981 14.15851901 1.000022446 1.254806774 0.115137384 0.205968208 0 0 0.194563071 0.047188476 4.81E-10 9.317747981 0.254784328 LNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_HeLa_A485_30min_R1 9 LNECISPVANEMNHLPAHSHDLQR 24 0 P23497-2;P23497-3;P23497;P23497-4;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 LNECIS(0.994)PVANEMNHLPAHS(0.006)HDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR ;;;;;;;; 245.02 1.58E-49 6522430000 653276 663691 690478 716916 863653 664934 889746 866000 652118 955880 TRUE FALSE FALSE 798594.9924 741303.8891 945914.5454 756079.3058 777664.6749 699748.9161 699644.4985 653612.1422 782992.101 717596.7077 1.112874382 1.033036915 1.31817013 1.053627055 1.083707139 0.975128381 0.974982871 0.910834923 1.091131122 1 19.45281375 -5.945436736 1.927294885 0.984154545 1.140724874 0.39565511 0.082202564 0.332889196 2.514170063 0.02974349 0.033976332 1.13E-06 5.945436736 0.156570329 LNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_HeLa_A486_30min_R1 8 LNECISPVANEMNHLPAHSHDLQR 24 0 P23497-2;P23497-3;P23497;P23497-4;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR ;;;;;;; 303.22 7.56E-90 7936780000 824728 1041039 861149 272413.5 1163936 1058241 1112113 1113857 937392 924925 TRUE FALSE FALSE 766918.8261 958543.2782 1194608.955 634192.395 1017944.294 927685.9848 833850.5647 860256.0764 1018645.893 693317.7597 1.106157769 1.382545398 1.723032388 0.914721116 1.468221864 1.338038687 1.202696098 1.240781827 1.469233809 1 19.40315719 -10.59356126 2.580855189 0.971613183 1.317833069 0.169447883 0.209957265 11819305.7 10715028.62 2278835.532 0.053411028 2.55E-11 10.59356126 0.346219886 LNEQAS(ph)EEILK ddPTM_HeLa_A485_30min_R1 2 LNEQASEEILK 11 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 LNEQAS(1)EEILK;LNEQAS(1)EEILK ; 162.37 6.85E-08 186581000 434800 274990 183604 503280 234390 271430 364190 254470 227850 585770 TRUE FALSE FALSE 531519.76 307147.6884 251526.76 530772.912 211053.3086 285641.6551 286377.8313 192060.8335 273577.405 439748.3193 1.208690828 0.69846245 0.5719789 1.206992474 0.479941138 0.649557127 0.651231213 0.436751717 0.622122685 1 18.74631854 -4.262315858 6.553175893 0.68519645 1.218659026 0.316361195 0.222364118 0.136245473 36.75394759 0.054699898 0.324798162 5.47E-05 4.262315858 0.533462575 LNEQAS(ph)EEILK ddPTM_HeLa_A486_30min_R1 2 LNEQASEEILK 11 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 LNEQAS(1)EEILK;LNEQAS(1)EEILK ; 188.92 9.82E-11 285860000 320830 315930 124992 80023 184698 340220 328730 265550 240910 426710 TRUE FALSE FALSE 298341.4738 290894.5562 173392.2498 186297.5881 161531.4546 298247.1155 246478.277 205090.0619 261792.2728 319859.0386 0.932727976 0.909446103 0.542089573 0.582436529 0.505008254 0.932432977 0.770584061 0.64118889 0.818461388 1 18.28707673 -8.039868435 7.011079395 0.99999033 0.72321856 0.230823309 0.152174812 0.581415391 97.77699254 0.157127632 0.040688328 9.12E-09 8.039868435 -0.276771771 LNEQAS(ph)EEILKVEQK ddPTM_HeLa_A485_30min_R1 1 LNEQASEEILKVEQK 15 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 LNEQAS(1)EEILKVEQK 47.047 0.012986 0 23048 12297 11573 28332 35256 20762 41865 38780 20773 59466 TRUE FALSE FALSE 28174.94809 13735.02718 15854.33429 29879.70542 31745.78885 21849.06622 32920.20074 29269.1442 24941.95056 44642.22059 0.631127836 0.307668996 0.355142152 0.669314945 0.71111581 0.489426062 0.737423011 0.655638179 0.558707659 1 15.44612117 -14 0.092875786 2.389451281 0.230600902 0.531842595 0.129480412 163.3556599 1.046141868 44.67421746 2.880612297 1.00E-14 14 -2.158850379 LNEQAS(ph)EEILKVEQK ddPTM_HeLa_A486_30min_R1 1 LNEQASEEILKVEQK 15 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 LNEQAS(1)EEILKVEQK 73.21 0.0039813 47368000 44400 36440 15957 29820 43832 51717 71457 80586 28705 65672 TRUE FALSE FALSE 41287.78928 33552.36169 22135.97774 69422.46702 38334.18184 45336.68236 53577.7028 62238.32698 31193.17251 49227.30375 0.838717259 0.681580325 0.449668701 1.410243132 0.778717885 0.92096619 1.088373702 1.264305015 0.633655921 1 15.5871711 -5.241157523 24.99974402 1.014214553 0.65914794 0.343969496 0.225985483 929.0205493 1145124.316 0.059477263 0.102858515 5.74E-06 5.241157523 -0.355066613 LNFAVASR ddPTM_HeLa_A485_30min_R1 2 LNFAVASR 8 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 200.16 1.05E-09 181299000 153129 148944 188826 194641 235310 151831 187273 148267 182630 274180 FALSE FALSE TRUE 187192.0178 166361.7052 258680.5951 205273.745 211881.7102 159780.6364 147260.5937 111904.2858 219282.1658 205831.9719 0.909440919 0.808240351 1.256756143 0.997287948 1.029391635 0.776267335 0.715440815 0.543668142 1.065345504 1 17.65110757 -6.26423623 24.09437514 0.785079633 1.003646418 0.199832954 0.173139379 207.2196257 1785149.551 0.059499435 0.054848182 5.44E-07 6.26423623 0.218566785 LNFAVASR ddPTM_HeLa_A486_30min_R1 2 LNFAVASR 8 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 210.05 1.58E-10 148198000 162566 207081 192435 57043 215547 200647 204859 209191 193369 207323 FALSE FALSE TRUE 151170.9629 190671.1474 266950.9856 132798.9868 188511.0854 175893.2132 153601.1114 161562.7759 210130.3806 155407.9714 0.972736222 1.226907125 1.717743197 0.854518501 1.213007825 1.131815901 0.988373441 1.039604175 1.352120993 1 17.24570098 -5.310442002 24.9999549 1.087963605 1.29791049 0.188216408 0.211865292 654.873723 334099.2836 0.059570341 0.088357328 4.89E-06 5.310442002 0.209946885 LNFS(ph)HGTHEYHAETIK ddPTM_HeLa_A485_30min_R1 1 LNFSHGTHEYHAETIK 16 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 LNFS(0.997)HGT(0.003)HEYHAETIK 159.77 5.66E-10 391870000 298280 315530 211050 385580 346880 345380 432980 449650 250550 504240 TRUE FALSE FALSE 364631.3569 352428.4888 289126.1775 406643.2591 312343.4092 363463.5627 340470.2859 339372.6325 300833.0868 378542.2478 0.963251418 0.931014942 0.763788399 1.074234808 0.825121663 0.960166441 0.899424801 0.896525116 0.794714694 1 18.5300948 -7.161474352 3.616148208 0.88408359 0.916422608 0.006041046 0.09084327 1.239315942 29.78641827 0.045109457 0.024103475 6.89E-08 7.161474352 0.032339019 LNFS(ph)HGTHEYHAETIK ddPTM_HeLa_A486_30min_R1 1 LNFSHGTHEYHAETIK 16 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 LNFS(0.989)HGT(0.011)HEYHAETIK 103.58 0.00021615 125440000 97311 84649 69077 39002 110050 99502 126720 136950 90091 119990 TRUE FALSE FALSE 90490.00141 77941.10495 95825.46435 90798.62705 96246.50282 87226.4549 95013.31569 105769.4746 97900.16042 89943.723 1.006073558 0.866554134 1.065393572 1.009504877 1.070074705 0.969789242 1.056364052 1.175951707 1.088460174 1 16.45673498 -5.30338061 0.596670491 1.083413028 0.927951736 0.255129343 0.067129665 1.706593298 1.012394693 0.043184516 0.158470207 4.97E-06 5.30338061 -0.155461293 LNFSHGTHEYHAETIK ddPTM_HeLa_A485_30min_R1 6 LNFSHGTHEYHAETIK 16 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;; ;;;;; 197.75 3.98E-18 1634520000 494458.7 648799.3 512781 314500.3 764865 575771.2 736559.1 819078.8 531457.9 614757.9 FALSE FALSE TRUE 604449.332 724670.7343 702480.0305 331680.655 688712.355 605917.6897 579187.2312 618198.44 638116.6257 461510.0693 1.309720789 1.570216519 1.522133702 0.71868563 1.492301904 1.312902426 1.25498287 1.339512356 1.382671079 1 18.8160026 -11.0479471 2.344976871 0.583931092 1.32117992 0.15682895 0.224361957 7434235.131 2335319.956 16598212.62 0.057944628 8.95E-12 11.0479471 0.737248828 LNFSHGTHEYHAETIK ddPTM_HeLa_A486_30min_R1 4 LNFSHGTHEYHAETIK 16 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 158.64 2.96E-10 412546000 219601 201550 169282 30002.5 259350 197321 215253 214309 185066 167568 FALSE FALSE TRUE 204208.1039 185578.444 234832.5239 69847.33624 226819.9047 172977.5412 161394.4227 165515.519 201107.6699 125607.8821 1.625758674 1.477442664 1.869568374 0.556074468 1.805777638 1.377123301 1.284906807 1.317716024 1.601075239 1 16.93856747 -13.27002421 0.136050433 6.28E-29 1.576323083 0.119773833 0.347842268 266.3727031 2.708358217 78.1337613 2.362991928 5.37E-14 13.27002421 1.576323083 LNFSHGTHEYHAETIK(ac)NVR ddPTM_HeLa_A485_30min_R1 1 LNFSHGTHEYHAETIKNVR 19 1 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 1 LNFSHGTHEYHAETIK(1)NVR 44.382 0.037882 11436000 17972 19870 20707 12825 22185 19789 22934 28415 14349 21250 FALSE TRUE FALSE 21969.8094 22193.62365 28367.38099 13525.59728 19976.1835 20825.12144 18033.96355 21446.1767 17228.71268 15952.76608 1.377178684 1.391208493 1.778210804 0.847852793 1.252208138 1.305423858 1.130459975 1.34435474 1.079982782 1 13.96151898 -1.000000001 0.133975457 0.960996435 2.706971311 0.252388479 0.210823459 119.5851102 1.079764138 1.047174246 39.65343765 0.1 1.000000001 1.745974876 LNFSHGTHEYHAETIK(ac)NVR ddPTM_HeLa_A486_30min_R1 2 LNFSHGTHEYHAETIKNVR 19 1 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 1 ; LNFSHGTHEYHAETIK(1)NVR;LNFSHGTHEYHAETIK(1)NVR 52.784 0.025911 23427000 34471 42349 43800 23329 70811 45699 61695 56847 48809 43443 FALSE TRUE FALSE 32054.76091 38993.11101 60760.533 54311.09098 61929.22409 40061.12201 46258.25846 43904.17906 53039.80342 32564.59003 0.984344064 1.197408319 1.865846705 1.667795938 1.901735106 1.230205016 1.420507932 1.348218387 1.628756983 1 14.99101644 -9.427142349 7.116463826 1.000020641 1.481358022 0.200853394 0.281636473 0 0 0.288183229 0.0698947 3.74E-10 9.427142349 0.481337381 LNGDTEEGFNRLS(ph)DEFSK ddPTM_HeLa_A485_30min_R1 3 LNGDTEEGFNRLSDEFSK 18 1 Q9BQ39;A0A087WVC1 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 1 0 LNGDTEEGFNRLS(1)DEFSK;LNGDTEEGFNRLS(1)DEFSK;LNGDTEEGFNRLS(1)DEFSK ;; 214.17 1.45E-26 383220000 572990 504940 336755 780450 721260 574450 861880 899950 472740 972070 TRUE FALSE FALSE 700449.6487 563988.3406 461334.688 823084.0073 649448.8219 604527.3137 677732.2971 679235.8514 567614.5818 729750.8386 0.959847679 0.772850555 0.6321811 1.127897309 0.889959679 0.828402356 0.928717394 0.930777761 0.777819705 1 19.47704444 -14 0.161191633 1.435873055 0.841165258 0.070496206 0.12682443 393.0173061 3.621904885 55.79629492 0.540949913 1.00E-14 14 -0.594707797 LNGDTEEGFNRLS(ph)DEFSK ddPTM_HeLa_A486_30min_R1 4 LNGDTEEGFNRLSDEFSK 18 1 Q9BQ39;A0A087WVC1 Q9BQ39 DDX50 ATP-dependent RNA helicase DDX50 1 0 LNGDTEEGFNRLS(0.999)DEFSK;LNGDTEEGFNRLS(1)DEFSK;LNGDTEEGFNRLS(1)DEFSK;LNGDTEEGFNRLS(1)DEFSK ;;; 248.7 3.83E-46 1429420000 793500 768784 442017 371462 760053 917900 1100930 1097480 674906 1146770 TRUE FALSE FALSE 737879.7476 707862.756 613177.82 864782.3087 664720.0655 804658.8305 825465.6695 847607.7618 733407.3955 859611.3278 0.85838765 0.82346839 0.713319846 1.006015487 0.773279788 0.936072856 0.960277794 0.986036054 0.853184889 1 19.71332497 -6.080326163 0.906743168 0.953856754 0.816433743 0.301496531 0.080795087 0.722708679 1.295089955 0.044810411 0.050089611 8.31E-07 6.080326163 -0.137423012 LNHS(ph)PPQSSSR ddPTM_HeLa_A485_30min_R1 7 LNHSPPQSSSR 11 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(0.997)PPQS(0.001)S(0.001)S(0.001)R ;;;;;; 110.35 0.00040177 7797873000 1667356 2863166 3050724 1378051 2762604 2241358 1706629 2172331 2400793 1678520 TRUE FALSE FALSE 2038253.59 3197988.357 4179313.759 1453330.437 2487549.446 2358712.039 1341993.772 1639563.416 2882610.134 1260095.855 1.617538525 2.537892927 3.316663365 1.153349113 1.974095412 1.87185128 1.064993403 1.301141822 2.28761179 1 20.26510205 -5.278272311 24.99808871 1.54880043 2.495417834 0.393438502 0.550542348 822.3860175 1221299.18 0.155572471 0.231428076 5.27E-06 5.278272311 0.946617404 LNHS(ph)PPQSSSR ddPTM_HeLa_A486_30min_R1 5 LNHSPPQSSSR 11 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 LNHS(0.999)PPQSSSR;LNHS(1)PPQSSSR;LNHS(1)PPQSSSR;LNHS(0.999)PPQSSSR;LNHS(0.993)PPQS(0.005)S(0.001)S(0.001)R ;;;; 94.017 0.0016324 4868730000 368903 472633 491956 67692.2 559578 389961 343879 417015 427114 257373 TRUE FALSE FALSE 343044.8047 435179.8398 682454.5382 157590.8626 489390.5094 341851.5767 257836.837 322069.7879 464136.5854 192925.1256 1.778124045 2.25569292 3.537406215 0.816849864 2.536686229 1.771939117 1.336460641 1.669403023 2.4057861 1 17.55768152 -5.268197323 24.99917651 1.705244379 2.496936246 0.270804747 0.653289442 760.9968744 2815101.707 0.179630309 0.273372544 5.39E-06 5.268197323 0.791691867 LNHVAAGLVS(ph)PSLK ddPTM_HeLa_A485_30min_R1 2 LNHVAAGLVSPSLK 14 0 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 LNHVAAGLVS(0.999)PS(0.001)LK;LNHVAAGLVS(0.998)PS(0.002)LK ; 260.58 1.00E-41 5735200000 3488900 3061300 2504470 4296200 4030700 3206800 4103100 3385900 2832900 4966900 TRUE FALSE FALSE 4264993.768 3419292.405 3430977.673 4530890.527 3629389.355 3374703.089 3226439.166 2555502.716 3401437.045 3728743.239 1.143815354 0.917009348 0.920143183 1.215125375 0.973354592 0.905051078 0.86528864 0.68535229 0.912220774 1 21.83025803 -6.331633341 2.487066887 0.843195717 1.034386074 0.336760298 0.113257654 0.327433117 3.97582386 0.044466904 0.039268157 4.66E-07 6.331633341 0.191190357 LNHVAAGLVS(ph)PSLK ddPTM_HeLa_A486_30min_R1 2 LNHVAAGLVSPSLK 14 0 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 LNHVAAGLVS(1)PSLK;LNHVAAGLVS(1)PSLK ; 213.69 7.27E-23 7732700000 8554800 8616700 5094800 2949300 8400500 9571500 10609300 9674600 7097600 10759100 TRUE FALSE FALSE 7955152.697 7933881.311 7067643.003 6866119.449 7346830.958 8390665.646 7954740.926 7471904.775 7712825.683 8064951.33 0.986385704 0.983748195 0.876340441 0.851352869 0.910957879 1.040386396 0.986334647 0.926466195 0.956338776 1 22.9432344 -6.202527038 24.99699139 0.977586435 0.918766446 0.281011441 0.047736784 406.3224485 172405.7316 0.017621938 0.01762193 6.27E-07 6.202527038 -0.058819989 LNHVAAGLVS(ph)PSLKSDTSSK ddPTM_HeLa_A485_30min_R1 1 LNHVAAGLVSPSLKSDTSSK 20 1 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 LNHVAAGLVS(0.987)PS(0.013)LKSDTSSK 210.62 5.81E-27 752770000 768350 996080 521160 692400 1170300 1354500 1922200 2458800 687960 983390 TRUE FALSE FALSE 939266.8067 1112562.891 713958.7713 730224.0588 1053780.823 1425419.526 1511506.267 1855775.445 826027.2617 738248.971 1.272290032 1.507029383 0.96709755 0.989129802 1.427405746 1.930811395 2.047420757 2.513752836 1.118900661 1 19.49374791 -6.081715054 4.069868096 1.833632413 1.19147865 0.231430978 0.438798527 0.28147501 8.625523701 0.145194841 0.148411331 8.28E-07 6.081715054 -0.642153763 LNHVAAGLVS(ph)PSLKSDTSSK ddPTM_HeLa_A486_30min_R1 2 LNHVAAGLVSPSLKSDTSSK 20 1 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 LNHVAAGLVS(0.994)PS(0.005)LKS(0.001)DTSSK;LNHVAAGLVS(0.995)PS(0.005)LKS(0.001)DTSSK ; 204.61 1.31E-26 1359720000 1708280 1160550 706460 644450 1744470 1355240 2247200 2376400 845150 2236500 TRUE FALSE FALSE 1588538.394 1068583.791 980020.2317 1500312.169 1525662.306 1188044.268 1684926.792 1835345.596 918408.2825 1676465.843 0.947551899 0.637402662 0.584575126 0.894925581 0.910046759 0.70865999 1.005046896 1.094770648 0.547824035 1 20.67699166 -5.293089764 23.91181754 0.883431122 0.714599145 0.148906704 0.171520617 671.2354292 507115.7736 0.047611909 0.070629621 5.09E-06 5.293089764 -0.168831977 LNISFPATGCQK ddPTM_HeLa_A485_30min_R1 1 LNISFPATGCQK 12 0 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 0 130.01 0.0013485 36702000 72625 78713 74475 95706 114280 84725 115820 106470 86582 146240 FALSE FALSE TRUE 88780.1807 87917.80064 102026.4017 100934.1764 102901.8819 89161.06999 91074.11084 80358.06556 103958.2132 109785.0593 0.808672703 0.800817535 0.929328656 0.919379896 0.93730315 0.812142112 0.829567442 0.731958119 0.946924963 1 16.74432221 LNISFPATGCQK ddPTM_HeLa_A486_30min_R1 2 LNISFPATGCQK 12 0 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 0 ; ; 176.8 9.60E-09 64482000 90974 108581 82805 36364 123757 106066 117601 119984 96711 111661 FALSE FALSE TRUE 84597.19239 99976.64611 114869.3136 84657.22973 108234.2431 92980.65532 88175.98594 92666.26243 105093.9873 83700.35881 1.010714812 1.194458991 1.37238735 1.011432101 1.29311564 1.11087523 1.053472018 1.107119058 1.255597812 1 16.35294619 -6.463464965 24.9969899 1.10857296 1.181429826 0.079700668 0.119830598 702.633608 295616.5873 0.041451984 0.03655714 3.44E-07 6.463464965 0.072856866 LNLAFVANLFNK ddPTM_HeLa_A485_30min_R1 2 LNLAFVANLFNK 12 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2 P13797-3 PLS3 Plastin-3 0 0 ; ; 288.03 3.96E-62 67638000 190048 125005 131774 219155 189019 98270 180119 107294 89264 301840 FALSE FALSE TRUE 232323.5219 139623.2474 180522.6862 231126.8827 170199.6047 103415.2652 141635.1042 80979.97827 107178.466 226596.843 1.025272545 0.616174725 0.796669026 1.019991628 0.751111986 0.456384405 0.625053299 0.357374698 0.472991877 1 17.78976824 -6.084702988 5.127822771 0.546975563 0.846974168 0.31013275 0.194719172 0.250623152 11.12899179 0.062483974 0.06320351 8.23E-07 6.084702988 0.299998606 LNLAFVANLFNK ddPTM_HeLa_A486_30min_R1 2 LNLAFVANLFNK 12 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2;H7C4N2 P13797-3 PLS3 Plastin-3 0 0 ; ; 269.59 4.78E-50 85667000 181926 217425 141337 97859 184305 209580 277494 218161 181693 249675 FALSE FALSE TRUE 169173.9269 200195.4512 196066.4715 227820.6975 161187.7483 183724.1505 208062.0662 168490.5027 197442.2955 187154.7549 0.903925348 1.06967868 1.047616833 1.217285116 0.861253824 0.981669691 1.111711355 0.900273695 1.054968097 1 17.51387218 -5.778214194 24.99997362 0.986164298 1.05948677 0.125611784 0.096453089 545.5983025 813116.8466 0.029778814 0.03385516 1.67E-06 5.778214194 0.073322471 LNLAQFLNEDLS(ph) ddPTM_HeLa_A485_30min_R1 4 LNLAQFLNEDLS 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 LNLAQFLNEDLS(1);LNLAQFLNEDLS(1);LNLAQFLNEDLS(1);LNLAQFLNEDLS(1) ;;; 140.07 3.76E-06 77990900 108629.5 106442.8 144571.3 135015.7 181617.3 100342.1 124386.1 126057.9 122306.3 183574.4 TRUE FALSE FALSE 132793.7575 118890.3595 198054.24 142391.2658 163534.8439 105595.8572 97809.99359 95142.00237 146852.0526 137812.6805 0.963581559 0.862695356 1.43712639 1.033223251 1.186645839 0.766227439 0.70973145 0.690371902 1.065591729 1 17.07234911 -6.265856546 24.89704445 0.818491923 1.099047902 0.319281222 0.180414988 409.828715 2309962.377 0.063217638 0.057668529 5.42E-07 6.265856546 0.280555978 LNLAQFLNEDLS(ph) ddPTM_HeLa_A486_30min_R1 3 LNLAQFLNEDLS 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 LNLAQFLNEDLS(1);LNLAQFLNEDLS(1);LNLAQFLNEDLS(1) ;; 172.8 1.01E-10 58584000 82882 132493 125798 46102.1 141935 112881 119979 122350 116265 105606 TRUE FALSE FALSE 77072.3998 121993.7721 174510.3546 107328.0187 124132.1888 98954.88991 89958.98519 94493.57588 126342.9438 79161.57022 0.97360878 1.541073172 2.204483237 1.355809623 1.56808649 1.250036977 1.13639718 1.193679908 1.596013614 1 16.27251261 -6.266325086 11.22528317 1.241096122 1.557282678 0.174475787 0.31589529 0.469131674 1015.94387 0.111509672 0.103123566 5.42E-07 6.266325086 0.316186556 LNLGTDSDS(ph)SPQK ddPTM_HeLa_A485_30min_R1 2 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;Q16512-3;K7EN76 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 LNLGTDS(0.001)DS(0.499)S(0.499)PQK;LNLGTDS(0.002)DS(0.499)S(0.499)PQK ; 141 4.02E-05 479550000 650630 599840 501420 901450 894960 752190 1049510 1038150 694380 1390910 TRUE FALSE FALSE 795360.3989 669986.0701 686916.1238 950693.9309 805854.64 791573.5053 825273.6148 783542.0847 833735.6968 1044181.735 0.761706868 0.641637416 0.65785112 0.91046788 0.771757074 0.758080207 0.790354387 0.750388614 0.798458419 1 19.9939414 -14 0.162003617 1.897847414 0.696016776 0.551261556 0.067497983 108.1977363 0.999365379 31.24399485 0.296312109 1.00E-14 14 -1.201830638 LNLGTDSDSS(ph)PQK ddPTM_HeLa_A485_30min_R1 3 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;Q16512-3;K7EN76 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 LNLGTDSDS(0.014)S(0.985)PQK;LNLGTDSDS(0.006)S(0.994)PQK;LNLGTDS(0.001)DS(0.201)S(0.798)PQK ;; 282.63 7.30E-49 1750710000 4688180 4211490 3110910 6862700 5820700 4605560 7094000 6848100 4186000 8439900 TRUE FALSE FALSE 5731049.467 4703987.12 4261765.065 7237591.924 5241170.67 4846700 5578308.947 5168592.738 5026091.804 6335988.255 0.904523373 0.742423586 0.672628309 1.142298823 0.8272065 0.764947756 0.880416554 0.815751629 0.793260909 1 22.59513823 -11.44286299 2.125645573 2.419903771 0.837530751 0.141277097 0.119690437 6787987.662 441754.4052 46619054.51 0.030080311 3.61E-12 11.44286299 -1.58237302 LNLGTDSDSS(ph)PQK ddPTM_HeLa_A486_30min_R1 5 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;Q16512-3;K7EN76 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 LNLGTDSDS(0.013)S(0.987)PQK;LNLGTDSDSS(1)PQK;LNLGTDS(0.002)DS(0.02)S(0.978)PQK;LNLGTDS(0.004)DS(0.305)S(0.691)PQK;LNLGTDS(0.001)DS(0.311)S(0.689)PQK ;;;; 310.17 2.75E-68 3294940000 8757510 8868060 4609290 4169330 8387290 9677410 12100100 11061300 6565290 12314080 TRUE FALSE FALSE 8143653.773 8165322.629 6394130.529 9706410.946 7335277.88 8483509.547 9072526.998 8542883.456 7134374.623 9230554.217 0.882249709 0.884597223 0.692713609 1.051552347 0.794673614 0.919068276 0.982879986 0.925500599 0.772908588 1 23.13798584 -5.260319359 24.99990403 0.915078025 0.826327897 0.190476972 0.094680181 191.4085215 4272379.86 0.025522551 0.041193595 5.49E-06 5.260319359 -0.088750128 LNLQFLTLHDYLLR ddPTM_HeLa_A485_30min_R1 2 LNLQFLTLHDYLLR 14 0 H0YH15;O60306 H0YH15 AQR Intron-binding protein aquarius 0 0 ; ; 216.15 5.79E-22 76919000 35639 45932 45984 33396 50239 39106 51837 54548 33639 52544 FALSE FALSE TRUE 43566.7726 51303.34784 62995.39515 35220.33892 45237.02876 41153.52969 40761.60148 41170.01747 40390.03874 39445.7478 1.104473233 1.30060528 1.597013586 0.892880497 1.146816356 1.043294448 1.033358568 1.043712435 1.023938979 1 15.26758217 -5.27706788 24.9997251 1.034132737 1.330688186 0.558107832 0.125340552 589.5605436 943073.7213 0.03522388 0.052441342 5.28E-06 5.27706788 0.296555449 LNLQFLTLHDYLLR ddPTM_HeLa_A486_30min_R1 1 LNLQFLTLHDYLLR 14 0 H0YH15;O60306 H0YH15 AQR Intron-binding protein aquarius 0 0 205.3 8.55E-16 34133000 16263 19465 19814 8048.6 23134 16195 22413 21858 17111 19856 FALSE FALSE TRUE 15123.04768 17922.52251 27486.51144 18737.54755 20232.318 14197.02556 16805.03034 16881.41056 18594.19526 14883.92836 1.016065606 1.204152699 1.84672425 1.258911431 1.359339921 0.953849361 1.12907224 1.134203965 1.249280083 1 13.86146773 -6.23678302 23.22912548 1.103905834 1.353631754 0.248042517 0.210816986 483.9832926 455967.1202 0.072439586 0.072393471 5.80E-07 6.23678302 0.24972592 LNLSCIHS(ph)PVVNELMR ddPTM_HeLa_A486_30min_R1 1 LNLSCIHSPVVNELMR 16 0 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 LNLS(0.001)CIHS(0.999)PVVNELMR 78.419 0.0035476 176630000 69176 76697 67347 23873 106880 63864 78515 93229 74239 76773 TRUE FALSE FALSE 64327.11963 70619.25039 93425.56202 55577.55047 93474.11378 55985.109 58869.71655 72002.79187 80674.09629 57548.54109 1.117788886 1.227124946 1.623421902 0.965750815 1.624265568 0.972832811 1.022957584 1.251166242 1.401844335 1 15.81249173 LNLTS(ph)PK ddPTM_HeLa_A485_30min_R1 6 LNLTSPK 7 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 LNLT(0.012)S(0.988)PK;LNLT(0.244)S(0.756)PK;LNLT(0.008)S(0.992)PK;LNLT(0.006)S(0.994)PK;LNLT(0.004)S(0.996)PK;LNLT(0.008)S(0.992)PK ;;;;; 126.55 0.0017376 10044650000 13420000 12491530 8986570 23074100 16317900 14340900 22664900 21495200 10992770 29521800 TRUE FALSE FALSE 16405232.7 13952305.77 12311076.21 24334579.66 14693232.58 15091767.35 17822358.96 16223468.5 13198918.11 22162558.57 0.74022287 0.629544 0.555489844 1.098004077 0.662975465 0.68095781 0.804165228 0.732021461 0.595550287 1 24.40162111 -11.05077155 2.620629059 1.373188797 0.725292677 0.251952041 0.143556877 25181388.68 9648553.558 56307921.09 0.036467543 8.90E-12 11.05077155 -0.647896121 LNLTS(ph)PK ddPTM_HeLa_A486_30min_R1 5 LNLTSPK 7 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 LNLT(0.023)S(0.977)PK;LNLT(0.065)S(0.935)PK;LNLT(0.419)S(0.581)PK;LNLT(0.025)S(0.975)PK;LNLT(0.001)S(0.999)PK ;;;; 154.05 0.00066954 8754560000 19570850 18838600 9274780 11958180 16131360 20683150 27591020 25143770 13627200 33395270 TRUE FALSE FALSE 18199034.48 17345760.73 12866223.2 27839247.37 14108014.41 18131473.24 20687454.97 19419082.46 14808416.67 25032877.03 0.727005308 0.692919184 0.513973012 1.112107384 0.563579424 0.724306408 0.826411401 0.775743133 0.591558719 1 24.57732077 -10.46713048 2.959923778 1.007124786 0.729172114 0.211784835 0.158831813 63461477.42 72564420.37 3738105.749 0.037666357 3.41E-11 10.46713048 -0.277952672 LNLTS(ph)PKR ddPTM_HeLa_A485_30min_R1 1 LNLTSPKR 8 1 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 LNLT(0.038)S(0.962)PKR 56.404 0.024489 476430000 185490 178140 146350 302520 322250 237610 382930 390400 232030 388430 TRUE FALSE FALSE 226751.6106 198971.9234 200490.9551 319045.9016 290165.6585 250050.8922 301113.8772 294653.7879 278596.2927 291601.5495 0.777607701 0.68234179 0.687551062 1.094115934 0.995075846 0.857508791 1.032620978 1.010467154 0.955400591 1 18.15363886 -5.251008525 24.94390682 0.988801694 0.71248432 0.80925789 0.061457424 288.30612 689441.78 0.017129749 0.029260657 5.61E-06 5.251008525 -0.276317374 LNLTS(ph)PKR ddPTM_HeLa_A486_30min_R1 1 LNLTSPKR 8 1 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 LNLT(0.166)S(0.834)PKR 49.35 0.033123 447540000 239480 275790 180990 165780 387990 334630 414580 462260 219860 371740 TRUE FALSE FALSE 222693.6887 253935.396 251074.1751 385944.2181 339324.6763 293346.7529 310847.699 357013.4891 238917.6418 278653.8844 0.799176689 0.911293222 0.901025211 1.38503082 1.21772814 1.052728023 1.115533342 1.281207653 0.857399287 1 18.08811474 -5.054398205 15.83919508 1.141631442 0.867960659 0.413633738 0.141618059 5.4027922 1572.825575 0.037755426 0.065416708 8.82E-06 5.054398205 -0.273670783 LNLVQR ddPTM_HeLa_A485_30min_R1 2 LNLVQR 6 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2;Q9BYZ2;A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8 P00338;A0A5F9ZHM4 LDHA;LDHAL6B;LDHB L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6B;L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ; ; 146.66 0.012554 233170000 255310 336810 377150 260470 437610 322450 400030 408450 331880 373490 FALSE FALSE TRUE 312102.8287 376196.9996 516673.4795 274698.8166 394040.0119 339332.9834 314560.3226 308276.9971 398485.2718 280385.8166 1.113119175 1.341711946 1.842723308 0.979717234 1.405349303 1.210235908 1.121883861 1.099474292 1.421203386 1 18.09705385 -5.311745518 24.99999192 1.189605725 1.423441502 0.223511569 0.217278446 569.1244497 282829.2795 0.060558762 0.089823325 4.88E-06 5.311745518 0.233835776 LNLVQR ddPTM_HeLa_A486_30min_R1 2 LNLVQR 6 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2;Q9BYZ2;A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;C9J7H8 P00338;A0A5F9ZHM4 LDHA;LDHAL6B;LDHB L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6B;L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ; ; 138.53 0.013181 77668000 103862 117324 105931 37479 149973 110743 127201 131619 104756 119819 FALSE FALSE TRUE 96581.81014 108026.819 146950.3201 87253.00608 131161.9879 97080.65461 95373.96441 101652.2269 113836.3344 89815.54251 1.075335153 1.202763085 1.636134638 0.971468898 1.460348446 1.080889253 1.061887083 1.131788821 1.267445826 1 16.4546775 -6.363682681 18.29132042 1.113718012 1.269687202 0.158466472 0.185064442 8.8443617 1572.29842 0.063528371 0.05602626 4.33E-07 6.363682681 0.15596919 LNMILVQILK ddPTM_HeLa_A486_30min_R1 1 LNMILVQILK 10 0 O14980;C9JKM9 O14980 XPO1 Exportin-1 0 0 179.68 4.39E-09 0 8265.9 8892.8 7285.7 5674.2 9960.9 10537 13069 11330 7731.7 10815 FALSE FALSE TRUE 7686.503095 8188.102141 10106.91816 13209.82436 8711.51104 9237.052072 9798.99797 8750.406332 8401.889981 8106.853606 0.948148748 1.010022203 1.2467128 1.629463785 1.074585957 1.139412714 1.2087301 1.079383785 1.03639345 1 12.98492638 -7.517888262 1.805309241 1.005307773 1.189186758 0.123871652 0.174511797 0.841965468 4.916074286 0.166236847 0.054309227 3.03E-08 7.517888262 0.183878985 LNNS(ph)SPNSSGGVK ddPTM_HeLa_A485_30min_R1 1 LNNSSPNSSGGVK 13 0 O00472;H0Y8G1;O00472-2 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 LNNS(0.631)S(0.344)PNS(0.024)S(0.002)GGVK 113.98 0.00023511 133670000 434230 380740 288640 589580 433450 391900 502270 378410 346730 698010 TRUE FALSE FALSE 530822.9654 425264.231 395419.9473 621787.2625 390294.1961 412419.278 394955.9113 285604.3542 416315.5306 524008.9529 1.013003618 0.811559094 0.754605327 1.186596639 0.744823526 0.787046244 0.753719777 0.545037165 0.794481713 1 18.99923194 LNNSS(ph)PNSSGGVK ddPTM_HeLa_A485_30min_R1 3 LNNSSPNSSGGVK 13 0 O00472;H0Y8G1;O00472-2 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 LNNS(0.114)S(0.746)PNS(0.114)S(0.027)GGVK;LNNS(0.027)S(0.962)PNS(0.007)S(0.005)GGVK;LNNSS(0.964)PNS(0.028)S(0.007)GGVK ;; 174.47 2.16E-12 373210000 1045340 919500 757190 1326610 1059700 897680 1179600 922920 877800 1681830 TRUE FALSE FALSE 1277872.277 1027027.526 1037306.09 1399079.345 954192.5472 944681.1367 927568.8236 696572.4229 1053966.408 1262580.733 1.012111339 0.813435133 0.821576049 1.108110799 0.755747749 0.748214441 0.734661 0.551705253 0.834771497 1 20.26794421 -5.953356349 24.99948219 0.744354483 0.922785923 0.263144421 0.132392533 153.1502856 82082.84183 0.039963253 0.045314057 1.11E-06 5.953356349 0.17843144 LNNSS(ph)PNSSGGVK ddPTM_HeLa_A486_30min_R1 3 LNNSSPNSSGGVK 13 0 O00472;H0Y8G1;O00472-2 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 LNNS(0.031)S(0.671)PNS(0.224)S(0.075)GGVK;LNNSS(1)PNSSGGVK;LNNS(0.002)S(0.998)PNSSGGVK ;; 226.7 1.28E-27 485120000 1359190 1440150 726890 465930 1089190 1401790 1468680 1372930 1087200 1610540 TRUE FALSE FALSE 1263917.8 1326027.269 1008361.275 1084708.587 952573.6339 1228851.402 1101200.73 1060343.81 1181439.371 1207250.301 1.046939312 1.098386364 0.835254523 0.898495188 0.789044023 1.017892811 0.912156103 0.878313146 0.978620068 1 20.20329339 -4.751221098 24.99985528 0.908043886 1.07266291 0.459304366 0.068759294 169.6349353 415017.5985 0.017122995 0.044211112 1.77E-05 4.751221098 0.164619024 LNQPGT(ph)PTR ddPTM_HeLa_A485_30min_R1 8 LNQPGTPTR 9 0 P36507;G5E9C7;M0R1B6 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 LNQPGT(0.998)PT(0.002)R;LNQPGT(0.959)PT(0.041)R;LNQPGT(0.983)PT(0.017)R;LNQPGT(0.941)PT(0.059)R;LNQPGT(0.906)PT(0.094)R;LNQPGT(0.998)PT(0.002)R;LNQPGT(0.756)PT(0.244)R;LNQPGT(0.881)PT(0.119)R ;;;;;;; 128.88 0.0012501 85516500000 27458740 35882160 33117610 26466600 40398490 34578990 42241160 44528290 30200640 36698150 TRUE FALSE FALSE 33566841.98 40078266.48 45369192.08 27912403.34 36376274.49 36389492.45 33215991.09 33607657.06 36261631.43 27549976.58 1.218398204 1.454747751 1.64679603 1.013155247 1.320374062 1.320853843 1.205663133 1.219879696 1.316212786 1 24.71554776 -14 0.095324152 0.015513739 1.531558309 0.278075366 0.154704587 261.6631918 1.711185494 51.57976239 3.102523335 1.00E-14 14 1.51604457 LNQPGT(ph)PTR ddPTM_HeLa_A486_30min_R1 8 LNQPGTPTR 9 0 P36507;G5E9C7;M0R1B6 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 LNQPGT(0.995)PT(0.005)R;LNQPGT(1)PTR;LNQPGT(0.614)PT(0.386)R;LNQPGT(0.948)PT(0.052)R;LNQPGT(0.992)PT(0.008)R;LNQPGT(0.737)PT(0.263)R;LNQPGT(0.993)PT(0.007)R;LNQPGT(0.982)PT(0.018)R ;;;;;;; 168.71 3.61E-05 74258050000 12595890 14934990 12986430 4476200 16864020 13243650 15210740 15366120 12476490 14236830 TRUE FALSE FALSE 11712983.16 13751487 18015123.48 10420819.81 14748777.36 11609783.11 11404851.97 11867589.92 13557962.2 10671835.1 1.097560358 1.288577538 1.688099873 0.976478714 1.382028229 1.08789004 1.06868705 1.112047722 1.270443374 1 23.34730494 -5.993805471 1.36699823 1.11516628 1.315223435 0.156281319 0.188716724 0.788957275 3.045500597 0.079232843 0.089740257 1.01E-06 5.993805471 0.200057155 LNQS(ph)PSLAPVKR ddPTM_HeLa_A485_30min_R1 3 LNQSPSLAPVKR 12 1 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LNQS(0.973)PS(0.027)LAPVKR;LNQS(0.851)PS(0.149)LAPVKR;LNQS(0.865)PS(0.135)LAPVKR ;; 154.88 3.93E-08 2280060000 1331620 1567140 1280910 1494890 1993480 1671700 2073710 2286050 1389660 1843120 TRUE FALSE FALSE 1627834.275 1750403.391 1754771.912 1576552.055 1795002.132 1759227.627 1630644.918 1725392.653 1668552.015 1383664.104 1.176466362 1.265049361 1.268206573 1.13940374 1.297281708 1.271426802 1.178497666 1.246973632 1.205893837 1 20.40006233 -8.839708149 1.164894247 0.999278073 1.23265603 0.670542693 0.048069675 3.906522751 4.86501356 0.05163752 0.013809701 1.45E-09 8.839708149 0.233377957 LNQS(ph)PSLAPVKR ddPTM_HeLa_A486_30min_R1 4 LNQSPSLAPVKR 12 1 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LNQS(0.933)PS(0.067)LAPVKR;LNQS(0.993)PS(0.007)LAPVKR;LNQS(0.713)PS(0.287)LAPVKR;LNQS(0.667)PS(0.333)LAPVKR ;;; 166.52 1.25E-10 2792510000 2247780 2164600 1512230 847200 2488670 2215410 2560110 2599220 1707300 2560180 TRUE FALSE FALSE 2090222.23 1993069.213 2097805.955 1972324.415 2176517.803 1942095.239 1919543.4 2007434.347 1855290.139 1919094.264 1.089171214 1.038546803 1.093122935 1.027737122 1.134138038 1.011985328 1.000234035 1.046032175 0.966753001 1 20.87199415 -6.476058779 23.09251866 1.006950646 1.072684 0.53894055 0.032997558 139.8407322 68972.0632 0.010830471 0.009551039 3.34E-07 6.476058779 0.065733354 LNQSPS(ph)LAPVKR ddPTM_HeLa_A485_30min_R1 1 LNQSPSLAPVKR 12 1 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LNQS(0.476)PS(0.524)LAPVKR 81.128 0.0032472 415730000 198200 223000 157540 231350 281060 252450 313440 354100 216690 304130 TRUE FALSE FALSE 242288.9062 249077.9102 215820.6018 243988.0647 253076.6795 265667.8916 246470.9834 267256.4198 260177.6954 228315.9881 1.061199911 1.090935034 0.945271523 1.068642046 1.108449223 1.163597407 1.079516969 1.170554993 1.139550925 1 17.80067236 -5.665054009 3.764393456 1.120279252 1.034394105 0.258448752 0.057523211 0.272883878 7.379116337 0.017075218 0.022238737 2.16E-06 5.665054009 -0.085885147 LNQSS(ph)PDNVTDTK ddPTM_HeLa_A485_30min_R1 6 LNQSSPDNVTDTK 13 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 LNQSS(1)PDNVTDTK;LNQSS(1)PDNVTDTK;LNQSS(1)PDNVTDTK;LNQS(0.002)S(0.998)PDNVTDTK;LNQS(0.002)S(0.998)PDNVTDTK;LNQS(0.034)S(0.966)PDNVTDTK ;;;;; 375.42 2.79E-109 6047080000 6182040 5502350 4231780 7875550 7238970 6323830 9031860 8466500 5263410 9952870 TRUE FALSE FALSE 7557213.47 6145801.968 5797291.521 8305771.355 6518232.729 6654935.96 7102129.327 6390077.6 6319728.108 7471802.678 1.011431082 0.822532692 0.775889269 1.111615458 0.872377525 0.890673409 0.950524209 0.85522569 0.845810359 1 22.83302492 -4.22718526 22.48127133 0.900945364 1.011431946 0.111506335 0.091919063 9264.337245 6079852.87 0.022706597 3.159336618 5.93E-05 4.22718526 0.110486582 LNQSS(ph)PDNVTDTK ddPTM_HeLa_A486_30min_R1 6 LNQSSPDNVTDTK 13 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 LNQS(0.025)S(0.975)PDNVTDTK;LNQS(0.004)S(0.996)PDNVTDTK;LNQS(0.001)S(0.999)PDNVTDTK;LNQS(0.001)S(0.999)PDNVTDTK;LNQS(0.068)S(0.932)PDNVTDTK;LNQSS(1)PDNVTDTK ;;;;; 376.16 2.47E-109 5268960000 9925360 10118140 5658060 4519070 9430020 10614520 12967470 12390430 8261120 13107000 TRUE FALSE FALSE 9229643.519 9316341.737 7849012.36 10520623.34 8247218.96 9305008.443 9722871.85 9569399.57 8977200.533 9824921.888 0.939411389 0.948235705 0.798888017 1.070809871 0.839418273 0.94708218 0.989613145 0.973992433 0.913717242 1 23.22801451 -6.517616639 24.78458637 0.967332595 0.919736193 0.10089245 0.070399136 528.6913126 2490167.284 0.025204649 0.020116945 3.04E-07 6.517616639 -0.047596403 LNQVIFPVSYNDK(ac)FYK ddPTM_HeLa_A485_30min_R1 2 LNQVIFPVSYNDKFYK 16 1 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6;A0A087WWJ2;F8WCK0;C9J5J3;A0A0D9SF32 C9J5D1 NAA50 N-alpha-acetyltransferase 50 0 1 ; LNQVIFPVSYNDK(1)FYK;LNQVIFPVSYNDK(1)FYK 319.58 1.61E-82 126055000 277950 217730 205829 340390 242910 223050 271580 213190 231150 430210 FALSE TRUE FALSE 339779.0186 243191.6295 281973.7124 358984.6438 218725.0275 234728.5531 213554.7144 160904.8182 277539.6848 322966.5644 1.05205633 0.752993208 0.873074006 1.111522626 0.677237372 0.726789021 0.661228554 0.498208904 0.859344946 1 18.30102529 -5.791105243 24.99981316 0.707732551 0.928214806 0.294339709 0.154416371 240.8915248 203001.172 0.046623825 0.05287371 1.62E-06 5.791105243 0.220482256 LNQVIFPVSYNDK(ac)FYK ddPTM_HeLa_A486_30min_R1 2 LNQVIFPVSYNDKFYK 16 1 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6;A0A087WWJ2;F8WCK0;C9J5J3;A0A0D9SF32 C9J5D1 NAA50 N-alpha-acetyltransferase 50 0 1 ; LNQVIFPVSYNDK(1)FYK;LNQVIFPVSYNDK(1)FYK 305.11 8.78E-82 168639000 341490 432260 270990 116542 326630 467400 434460 393620 412010 463400 FALSE TRUE FALSE 317553.3145 398006.1433 375924.5854 271315.6657 285661.0197 409736.9402 325753.5128 304001.3187 447723.3585 347361.6238 0.914186521 1.145797682 1.082228317 0.781075534 0.822373573 1.179568819 0.937793615 0.875172437 1.288925799 1 18.40607885 -7.751605268 24.99972765 1.144462948 0.972114241 0.200212615 0.141391972 301.8359346 767323.7543 0.100135407 0.036823425 1.77E-08 7.751605268 -0.172348707 LNQVIFPVSYNDK(ac)FYRK ddPTM_HeLa_A485_30min_R1 2 LNQVIFPVSYNDKFYRK 17 2 Q9GZZ1-2 Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 0 1 ; LNQVIFPVSYNDK(1)FYRK;LNQVIFPVSYNDK(1)FYRK 168.69 3.42E-10 53104000 45303 39960 42919 52511 45703 40235 47287 35151 38937 73289 FALSE TRUE FALSE 55380.49606 44632.97439 58796.52411 55379.54297 41152.64885 42341.64238 37183.74615 26530.16214 46751.29875 55019.40108 1.006563048 0.811222469 1.068650748 1.006545725 0.747966136 0.769576578 0.675829715 0.482196491 0.849723876 1 15.74765281 -5.802250467 6.542215403 0.723776699 0.968512848 0.362247735 0.138931503 0.188225072 20.98744913 0.042568311 0.049133212 1.58E-06 5.802250467 0.244736148 LNQVIFPVSYNDK(ac)FYRK ddPTM_HeLa_A486_30min_R1 2 LNQVIFPVSYNDKFYRK 17 2 Q9GZZ1-2 Q9GZZ1-2 NAA50 N-alpha-acetyltransferase 50 0 1 ; LNQVIFPVSYNDK(1)FYRK;LNQVIFPVSYNDK(1)FYRK 266.44 2.40E-43 71807000 59581 70475 47614 19587.7 57274 72994 70599 65967 62993 77828 FALSE TRUE FALSE 55404.67958 64890.30433 66051.41595 45601.15551 50090.16086 63988.74243 52934.38348 50947.75415 68453.28396 58339.36222 0.949696354 1.112290259 1.132192973 0.781653309 0.858599734 1.096836509 0.907352797 0.873299813 1.173363598 1 15.83218199 -5.212001613 24.99980522 0.950391473 1.069482891 0.150918359 0.117656866 681.8588829 344802.9565 0.031998286 0.055422541 6.14E-06 5.212001613 0.119091418 LNREVRDYYELVVVATDGAVHPRHST(ph)LT(ph)LAIK ddPTM_HeLa_A486_30min_R1 1 LNREVRDYYELVVVATDGAVHPRHSTLTLAIK 32 3 A0A087X250;A0A2R8Y6C0;A2A3E8;E7EMG0;A0A087WZ37;E7EM53;A0A087WZN9;A0A087WZW3;B7ZBT8;A0A087X1T6;A2A3E7;A0A087WUA8;A9Z1W1;C9J4F3;A2A3D8;A2A3E3;A0A087WTR6;A0A2R8YEV2;A2A3E6;Q96QU1-3;Q96QU1;Q96QU1-6;Q96QU1-4 A0A087X250 PCDH15 Protocadherin-15 2 0 LNREVRDY(0.011)Y(0.011)ELVVVAT(0.012)DGAVHPRHS(0.647)T(0.662)LT(0.657)LAIK 43.896 0.020661 27823000 18444 25361 14252 11834 26127 35748 36137 35698 16407 43147 TRUE FALSE FALSE 17151.17084 23351.302 19770.75608 27550.15006 22849.90804 31337.77522 27095.14038 27570.34468 17829.17197 32342.71036 0.530294791 0.72199583 0.611289402 0.851819459 0.706493296 0.968928543 0.837751075 0.852443854 0.551257819 1 14.98115296 -4.794193485 0.899343586 0.827395816 0.527724216 0.336375971 0.12801089 1.361361766 1.468361735 0.047460687 0.343937831 1.61E-05 4.794193485 -0.299671599 LNRSDS(ph)DSSTLSK ddPTM_HeLa_A485_30min_R1 3 LNRSDSDSSTLSK 13 1 H3BLZ3;Q8IX03-2;H0YAU4;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 LNRS(0.072)DS(0.663)DS(0.258)S(0.007)T(0.001)LSK;LNRS(0.003)DS(0.646)DS(0.267)S(0.067)T(0.017)LSK;LNRS(0.01)DS(0.7)DS(0.246)S(0.041)T(0.004)LSK ;; 121.44 3.31E-05 1185410000 655217 1110540 685770 570246 1433930 1271510 1712720 2625370 899880 870140 TRUE FALSE FALSE 800967.7612 1240407.993 939464.8603 601397.095 1291162.894 1338084.297 1346783.38 1981493.891 1080477.662 653230.1117 1.226164788 1.898883671 1.438183641 0.920651213 1.976582021 2.048411844 2.06172887 3.033378063 1.654053667 1 19.31723177 -5.917850997 8.755353611 2.084120444 1.414387523 0.213532203 0.527055716 0.38019324 36.49659141 0.159790511 0.18135475 1.21E-06 5.917850997 -0.669732921 LNS(ph)PPSSIYK ddPTM_HeLa_A485_30min_R1 1 LNSPPSSIYK 10 0 C9JKH7;Q53EP0-2;Q53EP0 C9JKH7 FNDC3B Fibronectin type III domain-containing protein 3B 1 0 LNS(0.997)PPS(0.003)S(0.001)IYK 105.08 0.00098506 266250000 483090 339200 189850 607120 372330 311170 525470 596570 248990 1199100 TRUE FALSE FALSE 590551.7039 378866.4894 260083.4153 640285.4283 335259.5179 327462.38 413199.0418 450260.2721 298960.0091 900186.4378 0.656032661 0.42087558 0.288921722 0.71128091 0.372433425 0.363771732 0.45901496 0.500185576 0.332108991 1 19.7798643 -10.3199505 3.933152977 1.001154645 0.453834134 0.614274665 0.129296201 346423353.1 483356757.9 4494960.74 0.03126295 4.79E-11 10.3199505 -0.54732051 LNS(ph)PPSSIYK ddPTM_HeLa_A486_30min_R1 1 LNSPPSSIYK 10 0 C9JKH7;Q53EP0-2;Q53EP0 C9JKH7 FNDC3B Fibronectin type III domain-containing protein 3B 1 0 LNS(0.993)PPS(0.005)S(0.001)IYK 120.59 0.00024161 283860000 540400 486990 270630 256610 510620 561030 643110 545630 374230 778970 TRUE FALSE FALSE 502520.7506 448399.1388 375425.1837 597401.0484 446573.2783 491815.8227 482197.0759 421401.96 406668.5577 583910.8418 0.860612126 0.767923982 0.6429495 1.023103196 0.764797031 0.842278971 0.825805999 0.721688878 0.696456597 1 19.15538857 -10.73791445 2.607887403 1.042484907 0.794864599 0.27768512 0.099683482 53463614.19 40992395.51 14699123.18 0.025736188 1.83E-11 10.73791445 -0.247620308 LNS(ph)SENGEDR ddPTM_HeLa_A485_30min_R1 2 LNSSENGEDR 10 0 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 LNS(0.5)S(0.5)ENGEDR;LNS(0.5)S(0.5)ENGEDR ; 154.68 2.33E-06 276310000 402440 465900 399740 553530 539640 415770 599070 513070 439740 657750 TRUE FALSE FALSE 491961.3896 520382.9522 547620.4606 583767.9423 485911.5468 437539.0743 471073.8005 387238.778 527991.7845 493785.03 0.996306813 1.053865388 1.109026048 1.182230944 0.984054836 0.886092222 0.954005836 0.784225431 1.069274588 1 18.91352357 -5.972810783 9.065383896 0.927124095 1.084824619 0.413876314 0.081984279 0.247669781 75.87133297 0.024987081 0.028180491 1.06E-06 5.972810783 0.157700524 LNS(ph)SENGEDR ddPTM_HeLa_A486_30min_R1 2 LNSSENGEDR 10 0 Q7L4I2;H0YGP9;E1B6W4;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 LNS(0.5)S(0.5)ENGEDR;LNS(0.5)S(0.5)ENGEDR ; 136.21 4.14E-05 645760000 632470 642470 548390 212424 753730 560160 630090 612310 571880 675530 TRUE FALSE FALSE 588137.1191 591558.3374 760741.2944 494533.8073 659190.1551 491053.1545 472434.8176 472900.3796 621451.0189 506372.891 1.16147039 1.168226712 1.502334165 0.976619831 1.301788004 0.969746136 0.9329781 0.933897505 1.227259654 1 18.94984065 -6.269083953 24.87720342 1.003657478 1.221027668 0.338992907 0.145859216 635.2371871 2067203.436 0.049980592 0.044928864 5.38E-07 6.269083953 0.21737019 LNS(ph)SLHFLQQEMQR ddPTM_HeLa_A485_30min_R1 1 LNSSLHFLQQEMQR 14 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 LNS(0.5)S(0.5)LHFLQQEMQR 126.25 2.00E-05 55487000 36788 34399 34294 28167 60779 38705 46272 57607 41670 46368 TRUE FALSE FALSE 44971.36368 38421.66382 46980.77769 29705.69189 54727.62935 40731.53395 36385.60919 43478.79293 50032.78678 34809.31094 1.291934901 1.103775478 1.349661238 0.853383508 1.572212373 1.170133302 1.045283811 1.249056409 1.43733919 1 15.08718564 -3.917367192 17.2584743 1.205234472 3.606267076 0.01772086 0.203557205 515.1348657 115058.9847 0.046538051 3288.622693 0.000120958 3.917367192 2.401032603 LNS(ph)SNSASPHR ddPTM_HeLa_A486_30min_R1 1 LNSSNSASPHR 11 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 LNS(0.495)S(0.495)NS(0.01)ASPHR 64.313 0.015634 111590000 58108 46563 43609 11730 49459 44788 47781 46420 45928 41238 TRUE FALSE FALSE 54034.92927 42873.1783 60495.57269 27308.0328 43255.39103 39262.51193 35825.68842 35851.17934 49909.07602 30911.73639 1.748039275 1.386954708 1.957042203 0.883419568 1.399319355 1.270149028 1.158967195 1.159791831 1.614567212 1 14.91586708 -5.257243921 24.99978247 1.226952918 1.666306311 0.480340757 0.230156797 327.4056045 1950928.417 0.060013036 0.09938964 5.53E-06 5.257243921 0.439353393 LNS(ph)VQSSERPLFLVHPIEGSTTVFHSLASR ddPTM_HeLa_A485_30min_R1 1 LNSVQSSERPLFLVHPIEGSTTVFHSLASR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LNS(0.873)VQS(0.063)S(0.063)ERPLFLVHPIEGSTTVFHSLASR 185.23 5.48E-21 217120000 63855 74535 62219 46689 94116 61543 84634 94456 53487 96209 TRUE FALSE FALSE 78059.32445 83251.21988 85236.39725 49239.50185 84745.48058 64765.29632 66551.2545 71290.5179 64221.35029 72225.8669 1.080766875 1.15265103 1.180136714 0.681743314 1.17333975 0.896705005 0.921432409 0.987049667 0.889173824 1 16.14022799 LNS(ph)VQSSERPLFLVHPIEGSTTVFHSLASR ddPTM_HeLa_A486_30min_R1 2 LNSVQSSERPLFLVHPIEGSTTVFHSLASR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LNS(0.989)VQS(0.006)S(0.006)ERPLFLVHPIEGSTTVFHSLASR;LNS(0.91)VQS(0.045)S(0.045)ERPLFLVHPIEGSTTVFHSLASR ; 151.36 7.78E-10 384410000 96603 103700 66854 23245.8 106004 102029 120131 123160 96591 92760 TRUE FALSE FALSE 89831.62856 95482.43433 92741.65921 54117.39718 92707.98987 89441.69933 90072.95318 95119.15656 104963.5857 69532.29223 1.291941135 1.373209933 1.333792634 0.778305956 1.333308408 1.286333248 1.295411819 1.367985342 1.50956602 1 16.08539553 LNSS(ph)ETADLLK ddPTM_HeLa_A486_30min_R1 1 LNSSETADLLK 11 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 LNS(0.037)S(0.93)ET(0.033)ADLLK 86.944 0.0032269 31660000 107250 131000 95057 56375 156770 140760 150900 164240 112430 163290 TRUE FALSE FALSE 99732.32884 120619.0829 131865.6161 131243.849 137106.4448 123394.4623 113143.2239 126846.1373 122175.5229 122401.1212 0.814799145 0.985440997 1.077323597 1.072243847 1.120140432 1.008115458 0.924364278 1.036315159 0.998156894 1 16.90125725 -4.296440821 3.29698624 1.031194359 0.793269711 0.613182928 0.050952468 0.206368446 3.737073676 0.014292143 0.118644729 5.05E-05 4.296440821 -0.237924648 LNSSSSSSSNSSNEREDFDSTSSSSST(ph)PPLQPR ddPTM_HeLa_A486_30min_R1 1 LNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 33 1 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 LNSSSSSSSNSSNEREDFDS(0.008)T(0.034)S(0.029)S(0.029)S(0.029)S(0.006)S(0.131)T(0.735)PPLQPR 87.96 0.00024066 274620000 148220 160230 158930 51033 213740 153930 184250 191760 147900 162090 TRUE FALSE FALSE 137830.5434 147532.7913 220471.9523 118807.4031 186930.7362 134939.6816 138148.7012 148100.4341 160720.0911 121501.609 1.134392742 1.214245577 1.81455994 0.977825759 1.538504204 1.110599957 1.13701129 1.218917472 1.322781587 1 16.89061589 -6.306874549 24.98944703 1.170241211 1.335845698 0.132672641 0.226509902 1002.438632 551340.535 0.077791774 0.068606123 4.93E-07 6.306874549 0.165604487 LNSVQSSERPLFLVHPIEGSTTVFHSLASR ddPTM_HeLa_A485_30min_R1 1 LNSVQSSERPLFLVHPIEGSTTVFHSLASR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 127.67 6.51E-13 35777000 10544 13123 17158 10064 17761 12677 16157 15545 13575 18198 FALSE FALSE TRUE 12889.47642 14657.6207 23505.4582 10613.77084 15992.65248 13340.74812 12704.92496 11732.56438 16299.37798 13661.57351 0.943484029 1.072908672 1.720552774 0.776906908 1.170630343 0.97651622 0.929975229 0.858800369 1.193082039 1 13.73783604 LNSVQSSERPLFLVHPIEGSTTVFHSLASR ddPTM_HeLa_A486_30min_R1 1 LNSVQSSERPLFLVHPIEGSTTVFHSLASR 30 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 119.75 1.16E-12 22547000 14664 17267 14166 2612.1 19012 13210 13606 14581 15774 9850.4 FALSE FALSE TRUE 13636.12932 15898.70003 19651.45458 6081.100808 16627.33768 11580.28451 10201.63489 11261.2246 17141.30302 7383.795725 1.846764162 2.153187957 2.661429881 0.823573814 2.251868592 1.568337606 1.381624746 1.52512678 2.321475791 1 12.85014693 -5.240928611 24.97344104 1.597624064 2.213733318 0.285987674 0.479566442 1107.03289 1347896.039 0.125086887 0.216326792 5.74E-06 5.240928611 0.616109254 LNT(ph)SDFQK ddPTM_HeLa_A485_30min_R1 5 LNTSDFQK 8 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 LNT(0.796)S(0.204)DFQK;LNT(0.829)S(0.171)DFQK;LNT(0.776)S(0.224)DFQK;LNT(0.5)S(0.5)DFQK;LNT(0.797)S(0.203)DFQK ;;;; 155.33 0.00064946 16672290000 16289000 11095760 7753330 25024100 18233200 15570800 27806300 24857500 11652580 33884600 TRUE FALSE FALSE 19912431.85 12393312.61 10621609.41 26391103.22 16417838.59 16386063.01 21865256.85 18761159.15 13991145.92 25437792.82 0.782789293 0.487200784 0.41755232 1.037476144 0.645411286 0.644162138 0.859557942 0.737530936 0.550014147 1 24.60047016 -14 0.19209456 2.305198591 0.632678896 0.213799356 0.174802021 223.2527518 2.189279862 112.4081762 0.474385213 1.00E-14 14 -1.672519695 LNT(ph)SDFQK ddPTM_HeLa_A486_30min_R1 5 LNTSDFQK 8 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 LNT(0.667)S(0.333)DFQK;LNT(0.887)S(0.113)DFQK;LNT(0.774)S(0.226)DFQK;LNT(0.748)S(0.252)DFQK;LNT(0.996)S(0.004)DFQK ;;;; 197.94 1.07E-05 12883200000 17524300 16228100 6907800 10174600 14086300 19597000 28191000 24113700 11824300 29590500 TRUE FALSE FALSE 16295937.07 14942126.25 9582685.157 23686983 12319464.9 17179321.39 21137313.63 18623536.91 12849239.84 22180846.2 0.734685094 0.673649965 0.432025229 1.067902585 0.55541005 0.774511542 0.952953437 0.839622472 0.579294393 1 24.40281107 -5.247836717 24.97364538 0.809649218 0.619473115 0.237367978 0.171651966 1266.804929 2325771.966 0.045587686 0.078423499 5.65E-06 5.247836717 -0.190176103 LNTILAQIMPFLSQEHQQQVAQAVER ddPTM_HeLa_A485_30min_R1 1 LNTILAQIMPFLSQEHQQQVAQAVER 26 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 0 0 134.97 1.59E-12 10094000 3450.9 3541.7 5243.4 3604.1 6886.6 3238.2 5264.7 4590.1 5102.5 5438.9 FALSE FALSE TRUE 4218.5408 3955.871006 7183.151856 3800.982857 6200.945924 3407.747145 4139.853836 3464.370778 6126.524947 4083.082326 1.033175543 0.968844292 1.759247373 0.930910169 1.518692358 0.834601625 1.013904082 0.84846949 1.500465692 1 11.99544294 -6.276652564 24.98516657 1.028418538 1.238422859 0.10682946 0.292055784 1897.460856 3116259.264 0.0997209 0.088285177 5.29E-07 6.276652564 0.210004321 LNTS(ph)DFQK ddPTM_HeLa_A485_30min_R1 1 LNTSDFQK 8 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 LNT(0.248)S(0.752)DFQK 163.12 3.72E-05 3462000000 4769300 3088700 2500200 6807300 5008100 4081200 7883200 7089000 3121000 9236800 TRUE FALSE FALSE 5830214.331 3449896.597 3425128.022 7179165.562 4509475.979 4294885.321 6198889.92 5350411.635 3747356.072 6934235.751 0.840786864 0.497516485 0.493944559 1.035321818 0.650320546 0.619373998 0.893954308 0.771593558 0.540413711 1 22.72530546 -11.34263284 2.262170929 2.754158759 0.705638322 0.211308774 0.171084503 4957547.552 560540.7188 44799145.47 0.042782435 4.54E-12 11.34263284 -2.048520436 LNTS(ph)DFQK ddPTM_HeLa_A486_30min_R1 1 LNTSDFQK 8 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 LNT(0.194)S(0.806)DFQK 170.02 2.43E-05 6943000000 3677400 3380400 1409600 2115600 2745100 3878500 5715600 5052000 2248300 5789600 TRUE FALSE FALSE 3419633.25 3112524.793 1955434.87 4925223.717 2400783.961 3400010.104 4285496.427 3901769.884 2443184.454 4339846.476 0.787961802 0.717196982 0.450576969 1.13488432 0.553195597 0.78344018 0.987476504 0.899057122 0.562965641 1 22.04921258 -5.240389755 24.97223443 0.832759527 0.658440484 0.175687232 0.190891076 1580.718128 1875283.874 0.050690874 0.087681148 5.75E-06 5.240389755 -0.174319043 LNTVAS(ph)PK ddPTM_HeLa_A485_30min_R1 5 LNTVASPK 8 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LNT(0.004)VAS(0.996)PK;LNTVAS(1)PK;LNTVAS(1)PK;LNTVAS(1)PK;LNT(0.003)VAS(0.997)PK ;;;; 115.65 0.00097199 1415290000 2773370 2544870 1670000 4467480 2602800 2555370 3928620 3299810 2152370 5653710 TRUE FALSE FALSE 3390296.588 2842470.409 2287802.494 4711527.12 2343656.093 2689165.222 3089238.243 2490526.424 2584330.916 4244344.146 0.798779852 0.669707807 0.539023796 1.110071888 0.552183332 0.63358793 0.727848199 0.586787107 0.608888164 1 22.01711021 -10.14628689 5.055291289 1.000014926 0.691171891 0.252971615 0.158843353 2.62E-05 4.43E-06 0.150887139 0.036593739 7.14E-11 10.14628689 -0.308843035 LNTVAS(ph)PK ddPTM_HeLa_A486_30min_R1 4 LNTVASPK 8 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LNTVAS(1)PK;LNTVAS(1)PK;LNT(0.003)VAS(0.997)PK;LNTVAS(1)PK ;;; 145.41 0.00033094 1534980000 3302310 2955110 1244840 1657560 2073220 3023170 3876740 3378580 2257870 5406300 TRUE FALSE FALSE 3070835.122 2720936.321 1726875.386 3858883.448 1813177.416 2650202.023 2906738.648 2609351.088 2453583.99 4052527.291 0.757758036 0.671417149 0.426123074 0.952216524 0.447418928 0.653962782 0.717265657 0.643882422 0.605445396 1 21.95039047 -10.37260763 2.899026134 1.005251786 0.651139893 0.350361894 0.141803308 16246775.35 19390581.71 722377.2567 0.034970463 4.24E-11 10.37260763 -0.354111893 LNWLSVDFNNWK ddPTM_HeLa_A485_30min_R1 1 LNWLSVDFNNWK 12 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 0 185.99 4.22E-14 0 16209 13195 13949 19144 17734 13888 18319 11886 12910 28474 FALSE FALSE TRUE 19814.63613 14738.04047 19109.31557 20189.78824 15968.34069 14615.15421 14404.996 8970.939863 15500.91858 21375.95583 0.92695907 0.689468138 0.893963092 0.944509261 0.74702347 0.68371933 0.673887807 0.419674326 0.725156747 1 14.38370131 -6.028295024 3.624571437 0.664134749 0.853719526 0.190897718 0.148291916 0.326853475 9.071652541 0.048721532 0.051652466 9.37E-07 6.028295024 0.189584777 LNWLSVDFNNWK ddPTM_HeLa_A486_30min_R1 1 LNWLSVDFNNWK 12 0 A0A087WYT3;Q15185-4;Q15185;B4DDC6 A0A087WYT3 PTGES3 Prostaglandin E synthase 3 0 0 224.42 1.05E-20 20619000 22396 33807 24277 12413 29593 37237 37427 35007 34095 40411 FALSE FALSE TRUE 20826.15605 31128.0102 33677.70456 28898.09132 25881.17 32643.07754 28062.36874 27036.6703 37050.38205 30291.82257 0.687517432 1.027604401 1.111775446 0.953989852 0.854394612 1.077620122 0.926400803 0.89254023 1.223114983 1 14.88664076 -4.258324536 24.11665921 1.000595081 0.687517237 0.45634403 0.104530459 168.9535471 1308012.986 0.025556084 0.17571342 5.52E-05 4.258324536 -0.313077844 LPAKLS(ph)ISK ddPTM_HeLa_A485_30min_R1 2 LPAKLSISK 9 1 Q6NZI2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 LPAKLS(0.993)IS(0.007)K;LPAKLS(0.997)IS(0.003)K ; 102.87 0.00070891 1957190000 4216200 2713300 1799430 6039900 3612100 3110000 5169100 3875000 3025000 8036000 TRUE FALSE FALSE 5154079.144 3030596.832 2465114.038 6369844.443 3252466.641 3272834.791 4064679.557 2924650.174 3632089.753 6032773.092 0.854346594 0.502355515 0.408620381 1.055873368 0.539132931 0.542509181 0.673766358 0.484793665 0.602059732 1 22.52438989 -11.05855403 2.423147995 1.52218431 0.623453664 0.268015025 0.183573994 11476910.89 3758507.288 33175027.49 0.044713549 8.74E-12 11.05855403 -0.898730646 LPAKLS(ph)ISK ddPTM_HeLa_A486_30min_R1 2 LPAKLSISK 9 1 Q6NZI2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 LPAKLS(0.985)IS(0.015)K;LPAKLS(0.999)IS(0.001)K ; 134.08 9.81E-05 2619000000 5291400 5896700 2395300 2683000 4146500 6948900 8074600 7567900 4218600 7723100 TRUE FALSE FALSE 4920500.185 5429424.017 3322824.308 6246159.591 3626407.305 6091615.369 6054249.676 5844854.376 4584271.645 5789185.491 0.849946887 0.937856288 0.573970952 1.078935819 0.626410626 1.052240489 1.045786093 1.009616013 0.791868157 1 22.46492895 -6.298181331 24.98896659 0.984620902 0.82178456 0.233207212 0.150433915 882.3174426 600079.8852 0.050492443 0.044531509 5.03E-07 6.298181331 -0.162836342 LPANT(ph)ADIS(ph)QRFQIMK ddPTM_HeLa_A485_30min_R1 2 LPANTADISQRFQIMK 16 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 2 0 LPANT(1)ADIS(1)QRFQIMK;LPANT(1)ADIS(1)QRFQIMK ; 46.362 0.034136 1263320000 858650 1487780 1349520 319310 1173650 1261840 978970 1110370 1212920 395260 TRUE FALSE FALSE 1049653.73 1661762.929 1848763.606 336753.0968 1056797.285 1327907.991 769805.0621 838050.0165 1456341.918 296728.9562 3.537415908 5.600272215 6.230479255 1.134884512 3.561490252 4.475154728 2.594303811 2.824294694 4.907987198 1 18.17878619 -5.245703435 24.99634528 3.081232784 5.17047738 0.356971925 1.338239041 939.5499887 1492460.915 0.355715195 0.613498006 5.68E-06 5.245703435 2.089244595 LPANT(ph)ADIS(ph)QRFQIMK ddPTM_HeLa_A486_30min_R1 1 LPANTADISQRFQIMK 16 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 2 0 LPANT(1)ADIS(1)QRFQIMK 46.362 0.034136 417860000 692870 835150 664070 27369 739300 503580 331820 435540 662730 154800 TRUE FALSE FALSE 644303.391 768969.6724 921215.6884 63716.41515 646570.1003 441453.4196 248795.1264 336377.0498 720175.97 116037.0724 5.552565034 6.626931001 7.938977339 0.549103953 5.572099389 3.804417075 2.144100339 2.898875702 6.206430023 1 16.82422628 -5.244248266 24.97963072 3.331023697 6.698235199 0.45601861 1.764649118 760.0880709 1104448.009 0.463640167 0.800503685 5.70E-06 5.244248266 3.367211501 LPATLLNAFPTAPS(ph)PRPPR ddPTM_HeLa_A485_30min_R1 1 LPATLLNAFPTAPSPRPPR 19 1 Q93015;Q93015-2 Q93015 NAT6 N-acetyltransferase 6 1 0 LPATLLNAFPTAPS(1)PRPPR 147.87 9.01E-09 65889000 37871 47546 47819 48202 52381 37559 41239 40010 45952 57071 TRUE FALSE FALSE 46295.2733 53106.0911 65509.23801 50835.15321 47165.76372 39525.53116 32427.95076 30197.48477 55174.1449 42844.25001 1.080548108 1.239515013 1.529008863 1.186510516 1.100865664 0.922539924 0.756879879 0.704820011 1.287784122 1 15.38681398 -5.968023273 2.214283475 0.905278357 1.281804675 0.414438603 0.18081896 0.285039101 2.824901647 0.065592127 0.073270136 1.08E-06 5.968023273 0.376526318 LPATLLNAFPTAPS(ph)PRPPR ddPTM_HeLa_A486_30min_R1 1 LPATLLNAFPTAPSPRPPR 19 1 Q93015;Q93015-2 Q93015 NAT6 N-acetyltransferase 6 1 0 LPATLLNAFPT(0.001)APS(0.999)PRPPR 194.97 2.88E-19 72163000 84689 81154 62462 28956 71544 63967 61945 68379 64044 75117 TRUE FALSE FALSE 78752.73843 74723.06148 86648.95919 67411.03136 62570.2844 56075.40191 46445.70581 52810.5944 69595.38549 56307.21427 1.398626081 1.327060172 1.5388607 1.197200611 1.111230332 0.995883079 0.824862434 0.937901033 1.235994115 1 15.78103216 -5.664055973 1.997876544 0.990148676 1.411564024 0.720569988 0.112384208 0.172550546 1.410792478 0.038574731 0.053951466 2.17E-06 5.664055973 0.421415347 LPCPAEGEAELELRVS(ph)EDEEKLPAS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LPCPAEGEAELELRVSEDEEKLPASPK 27 2 Q7RTP6;J3QLA3;J3QR21 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 2 0 LPCPAEGEAELELRVS(1)EDEEKLPAS(1)PK 66.828 0.0077735 92202000 56653 42269 24968 149380 66229 43648 96536 68361 38427 184220 TRUE FALSE FALSE 69255.2644 47211.99186 34204.70221 157540.2511 59635.00822 45933.34179 75910.29497 51595.35756 46138.94643 138297.3443 0.500770747 0.341380321 0.247327253 1.13914155 0.431208629 0.332134663 0.548891921 0.373075548 0.333621348 1 17.07741393 -10.61782856 2.859853596 1.042298367 0.475171053 0.30575059 0.238665375 125339351 124656782.9 39613428.43 0.06396855 2.41E-11 10.61782856 -0.567127314 LPCPAEGEAELELRVS(ph)EDEEKLPAS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LPCPAEGEAELELRVSEDEEKLPASPK 27 2 Q7RTP6;J3QLA3;J3QR21 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 2 0 LPCPAEGEAELELRVS(1)EDEEKLPAS(1)PK;LPCPAEGEAELELRVS(1)EDEEKLPAS(1)PK ; 120.56 5.19E-05 186403000 150867 181518 63955 270134 121222 226986 313196 268113 129769 446960 TRUE FALSE FALSE 140292.0024 167133.8526 88720.08877 628885.6038 106017.2064 198982.7751 234831.0482 207069.5228 141017.4814 335038.3068 0.418734215 0.49884998 0.264805806 1.87705582 0.316433089 0.59391052 0.700908056 0.618047306 0.420899576 1 18.35396653 LPCYFENLLSHFLPQKAPDGK ddPTM_HeLa_A486_30min_R1 1 LPCYFENLLSHFLPQKAPDGK 21 1 I3L543;I3L1Y8;I3L3I6;Q9HBL8 I3L543 NMRAL1 NmrA-like family domain-containing protein 1 0 0 130.87 5.59E-09 2690000 5569.3 4218.9 2028.3 2751.8 5391.2 3843.3 5664.7 5765.8 3788.2 7713.8 FALSE FALSE TRUE 5178.92083 3884.578999 2813.71208 6406.329468 4714.985425 3369.152722 4247.332145 4453.053207 4116.564226 5782.214272 0.895663942 0.671815124 0.48661498 1.107937058 0.815429039 0.582675177 0.73455115 0.7701294 0.711935607 1 12.49740636 -10.7779499 6.464718624 1.009172314 0.74998254 0.174630734 0.160994943 0.021894676 0.000752037 0.160359171 0.038215252 1.67E-11 10.7779499 -0.259189774 LPDLS(ph)PVENK ddPTM_HeLa_A485_30min_R1 2 LPDLSPVENK 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 LPDLS(1)PVENK;LPDLS(1)PVENK ; 143.42 5.98E-06 733760000 1023600 576840 593130 1771850 932070 631540 953550 611210 789920 2255300 TRUE FALSE FALSE 1251296.289 644296.4202 812553.4692 1868641.679 839269.8381 664606.4579 749816.2527 461309.7892 948449.6984 1693095.216 0.739058428 0.380543524 0.479921898 1.103683751 0.4957015 0.392539328 0.44286715 0.272465355 0.560186863 1 20.69123168 -8.053952842 22.33306607 1.000000003 0.532757916 0.278832528 0.221662824 7466.593469 3090693.652 0.224603285 0.057992319 8.83E-09 8.053952842 -0.467242087 LPDLS(ph)PVENK ddPTM_HeLa_A486_30min_R1 2 LPDLSPVENK 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 LPDLS(1)PVENK;LPDLS(1)PVENK ; 191.79 4.98E-10 1329830000 1530280 1951280 972950 722140 1417550 2099810 2237100 1903990 1633800 2154100 TRUE FALSE FALSE 1423015.274 1796653.466 1349702.297 1681178.415 1239747.661 1840756.792 1677353.918 1470493.041 1775419.099 1614699.339 0.881288076 1.112686073 0.835884591 1.041171179 0.767788548 1.139999718 1.038802629 0.910691548 1.09953541 1 20.62283413 -6.290569734 24.99331494 1.032286352 0.939233086 0.202680845 0.107658666 1360.562842 1167333.769 0.036276895 0.031997756 5.12E-07 6.290569734 -0.093053267 LPDLS(ph)PVENKEHKPGPIGK ddPTM_HeLa_A485_30min_R1 2 LPDLSPVENKEHKPGPIGK 19 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 LPDLS(1)PVENKEHKPGPIGK;LPDLS(1)PVENKEHKPGPIGK ; 102.21 6.24E-05 601040000 299309 220181 187380 345472 339420 334609 453020 422690 247330 517410 TRUE FALSE FALSE 365889.2544 245929.2526 256699.6595 364344.2606 305626.153 352128.6098 356228.5762 319024.6147 296966.8624 388429.2092 0.941971525 0.633137897 0.660866005 0.937993982 0.786825877 0.906545135 0.917100382 0.821319837 0.764532778 1 18.56729217 -5.262310997 24.99695475 0.868114383 0.734106418 0.252017133 0.102199285 105.3590907 3021598.351 0.027764959 0.044019046 5.47E-06 5.262310997 -0.134007965 LPDLS(ph)PVENKEHKPGPIGK ddPTM_HeLa_A486_30min_R1 1 LPDLSPVENKEHKPGPIGK 19 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8;A0A2R8YET2;A0A2R8Y7F4 E7EPN9 PRRC2C Protein PRRC2C 1 0 LPDLS(1)PVENKEHKPGPIGK 172.42 3.58E-13 361250000 458190 403150 228880 281590 464060 541340 669130 622490 345200 685990 TRUE FALSE FALSE 426073.2471 371202.9258 317508.4656 655555.7508 405853.2676 474554.9747 501706.5967 480762.6159 375122.2139 514213.639 0.828591882 0.721884636 0.617464107 1.274870406 0.789269745 0.922875122 0.975677342 0.934947227 0.729506543 1 18.97200835 LPDS(ph)DDDEDEETAIQR ddPTM_HeLa_A485_30min_R1 5 LPDSDDDEDEETAIQR 16 0 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-4;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR ;;;; 379.99 1.64E-119 3636320000 265326 257971 245948 279303 395475 212070.5 326253 296493 243089 375627 TRUE FALSE FALSE 324346.8533 288138.4644 336934.4 294560.6157 356100.1204 223174.1835 256546.3813 223777.6269 291874.7326 281990.1018 1.150206519 1.02180347 1.194844776 1.044577855 1.262810709 0.791425593 0.909770874 0.793565538 1.035053112 1 18.105285 -6.266540637 24.99882477 0.89329886 1.12688645 0.581300513 0.096711096 294.4500937 1442953.705 0.031513043 0.028633907 5.41E-07 6.266540637 0.23358759 LPDS(ph)DDDEDEETAIQR ddPTM_HeLa_A486_30min_R1 4 LPDSDDDEDEETAIQR 16 0 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-4;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR ;;; 532.08 0 6119470000 296106 295635 212123 96774.5 312932 280442 282277 308763 238385 320393 TRUE FALSE FALSE 275350.4985 272207.8059 294262.7065 225295.9267 273681.1506 245843.9174 211648.309 238464.4051 259048.4037 240164.5074 1.146507873 1.13342229 1.225254762 0.938090017 1.139557021 1.023647999 0.881263894 0.992921093 1.078629005 1 17.87366343 -5.259245348 24.99981907 1.008321545 1.164897708 0.526298698 0.069824924 164.3869997 1873092.83 0.020005686 0.032608338 5.50E-06 5.259245348 0.156576163 LPDS(ph)PALAK ddPTM_HeLa_A485_30min_R1 2 LPDSPALAK 9 0 H0YDB2;E9PNJ4;G0XQ39;Q13586 H0YDB2 STIM1 Stromal interaction molecule 1 1 0 LPDS(1)PALAK;LPDS(1)PALAK ; 112.13 0.0008396 630710000 877800 594550 420370 895750 526520 511960 576600 586900 532600 1791310 TRUE FALSE FALSE 1073063.582 664077.4506 575882.3561 944682.5543 474097.8201 538765.434 453404.6996 442961.8548 639487.9347 1344769.384 0.797953608 0.493822553 0.428238747 0.702486661 0.352549534 0.40063779 0.337161676 0.329396148 0.47553725 1 20.35892735 -10.91287605 6.470063403 1.144594888 0.470518971 0.524794282 0.148282937 0.071919703 0.000968449 0.033386464 0.035832316 1.22E-11 10.91287605 -0.674075917 LPDS(ph)PALAK ddPTM_HeLa_A486_30min_R1 2 LPDSPALAK 9 0 H0YDB2;E9PNJ4;G0XQ39;Q13586 H0YDB2 STIM1 Stromal interaction molecule 1 1 0 LPDS(1)PALAK;LPDS(1)PALAK ; 86.879 0.0040771 461920000 744500 858110 523520 182726 713980 786050 724210 658420 743130 905530 TRUE FALSE FALSE 692314.3946 790110.2384 726240.9644 425395.3625 624425.9708 689075.143 543004.9981 508512.1392 807545.1067 678779.394 1.019940206 1.164016241 1.069921938 0.626706359 0.91992476 1.015168034 0.79997272 0.749156712 1.189701859 1 19.37258324 -5.032385111 24.96514203 0.887797746 1.098226069 0.237848668 0.150516139 769.0629722 592857.5296 0.039920765 0.069218259 9.28E-06 5.032385111 0.210428323 LPDSSNKIEEDRCS(ph)NSADITGPSFIR ddPTM_HeLa_A485_30min_R1 1 LPDSSNKIEEDRCSNSADITGPSFIR 26 2 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 LPDS(0.018)S(0.018)NKIEEDRCS(0.945)NS(0.018)ADIT(0.002)GPS(0.001)FIR 55.033 0.014588 78482000 28196 34267 31878 28489 52300 35954 50713 52979 36417 51286 TRUE FALSE FALSE 34468.10292 38274.22757 43670.99875 30045.28193 47092.82836 37836.49584 39877.75326 39985.81718 43725.55786 38501.34405 0.895244147 0.994101077 1.134272058 0.78036969 1.223147647 0.982731818 1.035749641 1.038556398 1.135689128 1 15.23262119 -3.343170778 1.182148567 1.040936861 8.03E-11 0.130152513 0.111806127 23.84605256 5.419922196 0.031570628 51.10621913 0.000453763 3.343170778 -1.040936861 LPDSSNKIEEDRCS(ph)NSADITGPSFIR ddPTM_HeLa_A486_30min_R1 3 LPDSSNKIEEDRCSNSADITGPSFIR 26 2 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 LPDSSNKIEEDRCS(0.998)NS(0.002)ADITGPSFIR;LPDSSNKIEEDRCS(0.969)NS(0.03)ADITGPSFIR;LPDS(0.002)S(0.002)NKIEEDRCS(0.996)NS(0.001)ADITGPSFIR ;; 125.68 4.10E-06 561650000 97903 124467 124600 74425 176449 141213 208584 202597 107334 150777 TRUE FALSE FALSE 91040.50527 114603.7816 172848.4569 173265.1612 154317.1211 123791.5758 156394.077 156470.0858 116637.7975 113021.4578 0.805515227 1.014000207 1.529341952 1.533028901 1.365378965 1.095292683 1.383755616 1.384428132 1.031996931 1 16.78623718 -4.56536646 5.791018585 1.311293638 0.851893509 0.424949822 0.182921935 0.141359479 11.57774832 0.047217391 0.134011128 2.72E-05 4.56536646 -0.45940013 LPEASQS(ph)PLVLK ddPTM_HeLa_A485_30min_R1 2 LPEASQSPLVLK 12 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 LPEAS(0.003)QS(0.997)PLVLK;LPEAS(0.005)QS(0.995)PLVLK ; 183.81 6.55E-13 404270000 515080 553890 502030 590610 720550 597500 715400 808070 499890 783830 TRUE FALSE FALSE 629657.769 618662.6173 687751.7882 622873.5288 648809.512 628784.1761 562548.9457 609889.5655 600213.3377 588435.6063 1.070053821 1.051368426 1.168780034 1.058524539 1.102600701 1.068569219 0.956007658 1.036459315 1.020015328 1 19.16652502 -6.586060694 7.274767856 1.006410315 1.090228393 0.569345798 0.035949388 0.172141825 16.50880841 0.013635038 0.010542214 2.59E-07 6.586060694 0.083818078 LPEASQS(ph)PLVLK ddPTM_HeLa_A486_30min_R1 2 LPEASQSPLVLK 12 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 LPEAS(0.018)QS(0.982)PLVLK;LPEAS(0.04)QS(0.96)PLVLK ; 142.38 2.32E-07 516750000 786470 911660 637460 286410 1046690 880400 994050 957970 753520 961460 TRUE FALSE FALSE 731342.5143 839416.7414 884301.5838 666776.9544 915404.3802 771785.1993 745328.176 739861.1433 818835.7203 720704.1579 1.014761059 1.164717495 1.226996645 0.925174285 1.270152767 1.070876574 1.03416661 1.026580928 1.136160672 1 19.45904764 -6.505451636 24.86047056 1.051596316 1.123166221 0.106918077 0.097881393 1601.102532 2284043.066 0.033742597 0.029127738 3.12E-07 6.505451636 0.071569905 LPEGS(ph)PTWLGISCSSYER ddPTM_HeLa_A485_30min_R1 1 LPEGSPTWLGISCSSYER 18 0 B8ZZS2;Q13506-2;Q13506;C9JJ42;C9JL92;C9JID4 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 LPEGS(0.961)PT(0.038)WLGISCSSYER 57.499 0.0087587 0 20966 19195 16266 33694 24357 20873 36191 33864 19847 47487 TRUE FALSE FALSE 25629.81437 21439.68828 22283.47028 35534.6179 21931.93156 21965.878 28458.4972 25558.8009 23830.11085 35649.36483 0.718941683 0.601404496 0.625073417 0.996781235 0.615212407 0.616164639 0.798289039 0.716949685 0.668458217 1 15.12158875 -11.18798068 2.208283893 1.761852074 0.7071088 0.376366443 0.113390336 12643203.06 2702716.219 48086580.41 0.029177593 6.49E-12 11.18798068 -1.054743274 LPELDPRGS(ph)DEENLDSETSASTESLLEER ddPTM_HeLa_A485_30min_R1 1 LPELDPRGSDEENLDSETSASTESLLEER 29 1 M0R0P8;M0R240;M0QXP0;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 LPELDPRGS(0.999)DEENLDSETSASTESLLEER 51.632 0.015618 112220000 53462 50574 57822 65319 89649 59242 74869 48955 67404 95694 TRUE FALSE FALSE 65354.43746 56488.18936 79212.76397 68887.21157 80723.23078 62343.81951 58872.62653 36948.70949 80931.36453 71839.24692 0.909731661 0.786313774 1.10263912 0.958907763 1.123664769 0.867823957 0.819505062 0.514324844 1.126561984 1 16.13248461 -6.504842666 23.2487696 0.827344908 0.974156048 0.077524298 0.172020973 607.2337271 782736.4833 0.060294466 0.052047711 3.13E-07 6.504842666 0.14681114 LPEPSVLSEVTKPPPCLENS(ph)SPPSR ddPTM_HeLa_A486_30min_R1 1 LPEPSVLSEVTKPPPCLENSSPPSR 25 1 K7EL81;Q9BZL4-3;Q9BZL4-5;Q9BZL4-2;Q9BZL4-4;Q9BZL4 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 LPEPSVLSEVTKPPPCLENS(0.498)S(0.498)PPS(0.004)R 63.085 0.0089948 123670000 62302 79186 42491 23299 66703 84144 69929 71540 59798 84336 TRUE FALSE FALSE 57934.95153 72911.01297 58944.65315 54241.24947 58336.48776 73763.16879 52432.02457 55251.90371 64981.33879 63217.71666 0.916435369 1.153331958 0.932407184 0.858007096 0.92278701 1.166811658 0.829388142 0.873993979 1.027897593 1 15.94804131 LPGSGAVQAAS(ph)PER ddPTM_HeLa_A486_30min_R1 1 LPGSGAVQAASPER 14 0 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LPGSGAVQAAS(1)PER 211.45 1.18E-22 0 108490 168980 131390 53305 153490 169100 187780 153290 126740 113400 TRUE FALSE FALSE 100885.4112 155589.4094 182267.7267 124096.7339 134237.853 148238.1613 140795.4579 118389.2133 137725.9252 85003.90189 1.18683271 1.830379617 2.144227767 1.459894559 1.579196366 1.743898315 1.656341118 1.39275034 1.620230627 1 16.37524145 -8.985330443 0.479524369 0.928113782 1.689441101 0.375313944 0.243910042 4.380013568 1.291318669 0.865149135 0.133304054 1.03E-09 8.985330443 0.761327319 LPHSVLLEIQK ddPTM_HeLa_A485_30min_R1 2 LPHSVLLEIQK 11 0 Q9Y617;Q9Y617-2 Q9Y617 PSAT1 Phosphoserine aminotransferase 0 0 ; ; 151.15 8.95E-05 44779000 64323 69092 69747 74608 101036 73691 97702 92073 73759 111484 FALSE FALSE TRUE 78631.42944 77171.70838 95549.31771 78683.64612 90976.50108 77549.34681 76827.16955 69491.95239 88561.75474 83693.09051 0.939521159 0.922079803 1.141663154 0.940145066 1.087025231 0.926591984 0.917963109 0.830318871 1.058172834 1 16.3528209 -6.375285998 18.59509106 0.934201378 1.005491666 0.101318149 0.084607168 6.843043985 1097.675436 0.029108054 0.02567072 4.21E-07 6.375285998 0.071290288 LPHSVLLEIQK ddPTM_HeLa_A486_30min_R1 1 LPHSVLLEIQK 11 0 Q9Y617;Q9Y617-2 Q9Y617 PSAT1 Phosphoserine aminotransferase 0 0 115.18 0.0012115 29403000 22728 23413 17204 10535 25079 23254 28458 28003 20123 26580 FALSE FALSE TRUE 21134.88457 21557.66861 23865.84954 24526.01241 21933.35797 20385.15791 21337.5074 21627.3282 21867.27784 19924.19499 1.060764792 1.081984422 1.197832562 1.230966291 1.100840359 1.023135836 1.07093448 1.085480653 1.097523782 1 14.28223382 -5.997725516 24.99929912 1.061756416 1.145391744 0.371181774 0.053373249 89.25225875 980962.4674 0.017995523 0.020278072 1.01E-06 5.997725516 0.083635328 LPIFFFGTHETAFLGPK ddPTM_HeLa_A485_30min_R1 1 LPIFFFGTHETAFLGPK 17 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 0 156.5 1.14E-10 6552200 3869.4 4493 5145.2 5285.1 6947.7 3607.7 5414.2 5136.6 4709.6 8944.2 FALSE FALSE TRUE 4730.134681 5018.417266 7048.62359 5573.81163 6255.962593 3796.593593 4257.41194 3876.840796 5654.773521 6714.575546 0.704457735 0.747391586 1.049749689 0.830106325 0.931698892 0.565425702 0.634055259 0.577376897 0.842163958 1 12.71308049 -6.250230444 24.89565342 0.691781097 0.856525569 0.137040969 0.151234789 1096.924098 2436328.955 0.049459369 0.04902725 5.62E-07 6.250230444 0.164744472 LPIFFFGTHETAFLGPK ddPTM_HeLa_A486_30min_R1 1 LPIFFFGTHETAFLGPK 17 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 0 79.022 0.005068 5597500 2872.7 3607.4 3997.5 1512.6 4746.4 3842.5 4485.9 4324.2 3561.9 3376.9 FALSE FALSE TRUE 2671.338565 3321.536486 5545.439057 3521.409243 4151.062254 3368.451418 3363.480373 3339.674057 3870.64836 2531.30226 1.055321842 1.312184854 2.190745508 1.3911453 1.639891971 1.330718765 1.328754936 1.319350166 1.529113461 1 11.30566407 -6.286376759 19.97381649 1.323244263 1.536774532 0.112626224 0.298115202 155.7132343 124716.712 0.107537046 0.094959836 5.17E-07 6.286376759 0.213530269 LPISDS(ph)PPDTQEIHVIEQEK ddPTM_HeLa_A486_30min_R1 1 LPISDSPPDTQEIHVIEQEK 20 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 LPIS(0.014)DS(0.985)PPDT(0.001)QEIHVIEQEK 106.99 2.51E-05 49915000 179790 171650 68545 41542 81234 142080 138020 121080 129730 199540 TRUE FALSE FALSE 167187.6494 158047.8289 95087.4597 96711.87542 71044.87424 124551.6142 103485.9362 93512.72716 140975.1009 149573.8852 1.117759622 1.056653898 0.635722336 0.646582626 0.474981807 0.832709627 0.691871686 0.625194211 0.942511459 1 17.19049878 -4.721445227 7.140068789 0.707900022 1.092794257 0.465636232 0.150978697 0.15692746 21.31941899 0.037286424 0.097891089 1.90E-05 4.721445227 0.384894235 LPISS(ph)STSNLHVDR ddPTM_HeLa_A486_30min_R1 1 LPISSSTSNLHVDR 14 0 G3V3H1;Q86TV6;Q86TV6-2 G3V3H1 TTC7B Tetratricopeptide repeat protein 7B 1 0 LPIS(0.07)S(0.412)S(0.402)T(0.112)S(0.005)NLHVDR 70.889 0.0073047 79278000 40109 49395 47205 9411 52040 42016 46304 49958 40772 34994 TRUE FALSE FALSE 37297.56622 45480.76031 65484.04019 21909.28361 45512.65795 36832.49311 34718.24945 38583.65398 44306.14979 26231.27463 1.421873956 1.733837221 2.496410911 0.835235188 1.735053237 1.404144237 1.323544126 1.47090275 1.689058211 1 14.67900029 -5.266885165 24.99999447 1.38781076 1.86902034 0.312437884 0.359193431 579.1603091 2658755.595 0.098410917 0.150833679 5.41E-06 5.266885165 0.48120958 LPISSS(ph)TSNLHVDR ddPTM_HeLa_A485_30min_R1 4 LPISSSTSNLHVDR 14 0 G3V3H1;Q86TV6;Q86TV6-2 G3V3H1 TTC7B Tetratricopeptide repeat protein 7B 1 0 LPIS(0.004)S(0.059)S(0.873)T(0.059)S(0.004)NLHVDR;LPIS(0.001)S(0.174)S(0.797)T(0.023)S(0.005)NLHVDR;LPISS(0.01)S(0.975)T(0.015)SNLHVDR;LPIS(0.007)S(0.044)S(0.907)T(0.04)S(0.002)NLHVDR ;;; 190.55 7.31E-18 782050000 301584 338731 404627 297740 473892 309747 402525 363337 330201 420030 TRUE FALSE FALSE 368670.3203 378342.6439 554315.3652 314004.7823 426709.6485 325964.874 316522.2454 274228.0311 396469.3119 315324.2511 1.169178454 1.199852668 1.757921769 0.995815518 1.353240821 1.033745019 1.003799246 0.869669967 1.257338472 1 18.2664766 -6.270799494 22.29079248 1.022945362 1.298978759 0.294026442 0.202878854 195.4430262 465437.5568 0.06997323 0.062716385 5.36E-07 6.270799494 0.276033397 LPISSS(ph)TSNLHVDR ddPTM_HeLa_A486_30min_R1 2 LPISSSTSNLHVDR 14 0 G3V3H1;Q86TV6;Q86TV6-2 G3V3H1 TTC7B Tetratricopeptide repeat protein 7B 1 0 LPISS(0.002)S(0.937)T(0.061)SNLHVDR;LPISS(0.001)S(0.981)T(0.019)SNLHVDR ; 180.78 1.85E-17 487530000 151950 200240 181110 38441 211660 158580 201810 185420 156390 151860 TRUE FALSE FALSE 141299.0897 184372.2531 251240.6423 89492.5907 185111.6291 139016.0119 151315.0035 143203.9137 169946.0111 113833.2676 1.241281154 1.619669338 2.207093301 0.786172554 1.626164592 1.221224822 1.329268734 1.25801461 1.492938003 1 16.79656272 -5.264585963 24.99997558 1.274000965 1.682380051 0.297612908 0.310632621 361.1938404 2869734.749 0.08419577 0.131076176 5.44E-06 5.264585963 0.408379086 LPLFHRLR ddPTM_HeLa_A485_30min_R1 1 LPLFHRLR 8 1 A0A1W2PP70;Q08AS3 A0A1W2PP70 HLA-DQA1 0 0 0 0.037816 6331100 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 LPLGLLLHPFR ddPTM_HeLa_A486_30min_R1 2 LPLGLLLHPFR 11 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 0 0 ; ; 80.688 0.01516 20209000 5901.4 6447.9 7200.3 2035.62 8180.3 4309.37 5534.7 5697.7 5446.3 4148 FALSE FALSE TRUE 5487.742335 5936.944921 9988.448991 4739.026235 7154.250496 3777.723744 4149.85952 4400.45809 5918.389669 3109.313801 1.764936795 1.909406802 3.212428732 1.524138938 2.300909768 1.214970243 1.334654456 1.415250557 1.903439166 1 11.60238051 -6.259794641 24.99771625 1.397178005 2.154524326 0.401012383 0.469182647 160.6420067 2441543.247 0.158339299 0.15050986 5.50E-07 6.259794641 0.757346321 LPLLPELQPQPLLPQHDS(ph)PAKK ddPTM_HeLa_A485_30min_R1 2 LPLLPELQPQPLLPQHDSPAKK 22 1 Q8TE04 Q8TE04 PANK1 Pantothenate kinase 1 1 0 LPLLPELQPQPLLPQHDS(1)PAKK;LPLLPELQPQPLLPQHDS(1)PAKK ; 99.711 0.0005541 195108000 264180 143572 119655 529140 245550 200128 350460 238380 192619 687740 TRUE FALSE FALSE 322945.9296 160361.4965 163920.3638 558045.5783 221102.1798 210606.3926 275581.358 179916.9312 231275.8665 516299.0749 0.625501662 0.310598071 0.317491105 1.080857211 0.428244385 0.407915495 0.533763029 0.348474247 0.447949411 1 18.97784749 -11.05289238 2.453797837 1.676994109 0.497933157 0.327007632 0.215129676 37654995.59 12636577.61 142988170.2 0.055470716 8.85E-12 11.05289238 -1.179060952 LPLLPELQPQPLLPQHDS(ph)PAKK ddPTM_HeLa_A486_30min_R1 2 LPLLPELQPQPLLPQHDSPAKK 22 1 Q8TE04 Q8TE04 PANK1 Pantothenate kinase 1 1 0 LPLLPELQPQPLLPQHDS(1)PAKK;LPLLPELQPQPLLPQHDS(1)PAKK ; 176.68 8.82E-15 307370000 422300 440810 170146 258840 351550 565030 672730 597400 373660 771700 TRUE FALSE FALSE 392698.9508 405878.6102 236031.0879 602592.601 307455.3209 495322.3434 504405.8386 461385.0612 406049.1497 578461.2971 0.67886815 0.701652146 0.408032636 1.041716367 0.531505431 0.856275685 0.871978542 0.797607486 0.701946961 1 19.14186091 -10.15070331 0.046014921 1.874788186 1.18E-09 0.241035756 0.162896224 363.0971297 3.048093223 81.26140844 45.8650032 7.07E-11 10.15070331 -1.874788185 LPLLPPES(ph)PGPLR ddPTM_HeLa_A485_30min_R1 8 LPLLPPESPGPLR 13 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR ;;;;;;; 188.09 2.47E-17 1262611000 554735 515804 411573 603212 446146 525807 603366 487215 494346 1054634 TRUE FALSE FALSE 678133.8869 576122.7909 563830.9797 636163.9441 401726.1377 553337.4415 474451.9251 367724.7573 593556.7078 791733.1529 0.85651824 0.72767294 0.712147745 0.803508028 0.50740093 0.698893863 0.599257368 0.464455424 0.74969288 1 19.59465474 -4.140531129 0.794251793 0.652306362 0.986309944 0.075964087 0.14574907 5.972549683 2.557122984 0.05313497 1.845352979 7.24E-05 4.140531129 0.334003582 LPLLPPES(ph)PGPLR ddPTM_HeLa_A486_30min_R1 6 LPLLPPESPGPLR 13 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR ;;;;; 121.21 7.33E-05 1280971000 561797 663315 627397 231901 885556 709249 645229 643592 774832 887959 TRUE FALSE FALSE 522417.9314 610751.5036 870341.9207 539877.2476 774481.309 621749.0695 483785.8797 497060.1511 841995.0616 665608.2868 0.784872938 0.917583984 1.30758877 0.811103555 1.163569211 0.934106564 0.726832717 0.746775785 1.26500087 1 19.34431387 -6.509171395 24.51429428 0.901681665 1.004405373 0.012407613 0.201639942 1732.150391 3097797.218 0.072570657 0.061371428 3.10E-07 6.509171395 0.102723708 LPLPDDEHDLS(ph)DRELELEDSAALSDLHWHDR ddPTM_HeLa_A485_30min_R1 3 LPLPDDEHDLSDRELELEDSAALSDLHWHDR 31 1 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;A0A5F9ZHE1;H0Y325;H0Y326;F8WAI0;Q5JV20;A0A5F9ZHB2;A0A5F9ZH87;Q8NF91-9;Q8NF91-3;Q8NF91-11;Q8NF91-8;Q8NF91-2 Q8NF91 SYNE1 Nesprin-1 1 0 LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR;LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR;LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR ;; 286.85 2.20E-78 170078000 30399.9 37538.7 45316.9 37674.6 50840.3 37395.4 47853.9 66619 44649.1 78668 TRUE FALSE FALSE 37162.25288 41928.52442 62081.5071 39732.668 45778.46122 39353.36532 37629.52333 50280.5858 53609.76482 59057.51538 0.629255272 0.70996086 1.051204181 0.672779201 0.775150477 0.666356603 0.637167397 0.851383359 0.907755169 1 15.84983304 -7.710244419 2.33422094 0.981435047 0.742875925 0.364140476 0.116872261 0.343442685 3.477596714 0.111141353 0.032533727 1.95E-08 7.710244419 -0.238559122 LPLPDDEHDLS(ph)DRELELEDSAALSDLHWHDR ddPTM_HeLa_A486_30min_R1 4 LPLPDDEHDLSDRELELEDSAALSDLHWHDR 31 1 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;A0A5F9ZHE1;H0Y325;H0Y326;F8WAI0;Q5JV20;A0A5F9ZHB2;A0A5F9ZH87;Q8NF91-9;Q8NF91-3;Q8NF91-11;Q8NF91-8;Q8NF91-2 Q8NF91 SYNE1 Nesprin-1 1 0 LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR;LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR;LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR;LPLPDDEHDLS(1)DRELELEDSAALSDLHWHDR ;;; 358.25 2.73E-148 216349000 45966.2 55486.4 61747 11902.3 87076.4 51137.8 61501.2 64129.3 65498.64 42542.6 TRUE FALSE FALSE 42744.20675 51089.45559 85657.09204 27709.15591 76154.46596 44828.93817 46112.94927 49528.45832 71176.11485 31889.65605 1.340378419 1.602069822 2.686046281 0.86890733 2.388061691 1.405751699 1.446015886 1.553119866 2.231949907 1 14.96080092 LPLPS(ph)PALEYTLGSR ddPTM_HeLa_A485_30min_R1 3 LPLPSPALEYTLGSR 15 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 LPLPS(1)PALEYTLGSR;LPLPS(1)PALEYTLGSR;LPLPS(0.999)PALEYT(0.001)LGSR ;; 239.51 3.79E-41 257764000 139493 143055 160989 122428 149356 123407 144792 128363 121335 174993 TRUE FALSE FALSE 170522.7366 159784.0378 220545.5304 129115.9316 134485.5922 129868.3997 113856.0064 96881.77298 145685.8215 131370.4656 1.298029476 1.216285846 1.678806034 0.98283835 1.023712534 0.988566183 0.866678868 0.737469967 1.108969363 1 17.00328144 -5.388149715 7.708297377 0.944420946 1.378510416 0.657530713 0.1450908 0.163911722 9.507078509 0.041065952 0.061004914 4.09E-06 5.388149715 0.43408947 LPLPS(ph)PALEYTLGSR ddPTM_HeLa_A486_30min_R1 4 LPLPSPALEYTLGSR 15 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 LPLPS(1)PALEYTLGSR;LPLPS(1)PALEYTLGSR;LPLPS(1)PALEYTLGSR;LPLPS(0.995)PALEY(0.001)T(0.002)LGS(0.002)R ;;; 150.37 5.31E-08 636066000 386740 601976 436519 160022.5 547916 438276 421699 425079 382966 403258 TRUE FALSE FALSE 359631.5231 554273.2294 605550.8472 372540.4671 479191.2662 384205.9632 316185.4499 328297.7911 416161.8012 302279.572 1.189731482 1.83364435 2.003280748 1.232436795 1.585258517 1.27102854 1.046003366 1.086073362 1.376744708 1 18.20552396 -6.148980404 1.296220375 1.128973517 1.642152091 0.411003599 0.248154889 0.430508741 1.48091742 0.115627027 0.114852581 7.10E-07 6.148980404 0.513178573 LPLQDVYK ddPTM_HeLa_A485_30min_R1 2 LPLQDVYK 8 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ; ; 114.89 0.0085926 59348000 80906 59423 66716 114458 95304 70492 87802 68348 81659 165247 FALSE FALSE TRUE 98903.26058 66372.00294 91397.02468 120710.5507 85815.19913 74182.85212 69042.38542 51585.54583 98047.21228 124053.964 0.797259977 0.535025248 0.73675215 0.973048718 0.691757009 0.597988566 0.556551223 0.415831499 0.790359365 1 16.92060831 -8.008680388 24.86059094 1.000000027 0.66281115 0.336402896 0.146099382 413.9988365 1185693.6 0.151715309 0.039172724 9.80E-09 8.008680388 -0.337188877 LPLS(ph)PPLVEDSAFEPSR ddPTM_HeLa_A485_30min_R1 3 LPLSPPLVEDSAFEPSR 17 0 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 0 LPLS(1)PPLVEDSAFEPSR;LPLS(1)PPLVEDSAFEPSR;LPLS(1)PPLVEDSAFEPSR ;; 141.13 4.36E-07 99617000 28488.4 26407.1 31595.3 37290.4 33566.8 19541.8 23882.6 19426.6 31426.1 52637 TRUE FALSE FALSE 34825.5463 29495.18063 43283.71626 39327.48013 30224.77153 20564.97843 18779.88741 14662.19589 37733.03001 39515.56461 0.881312127 0.746419314 1.095358669 0.995240243 0.764882694 0.520427296 0.475252918 0.371048624 0.954890317 1 15.2701334 -5.989536151 4.547798787 0.614466067 0.926236141 0.254655841 0.205007379 0.232057044 12.26807471 0.066065401 0.072141739 1.02E-06 5.989536151 0.311770074 LPLS(ph)PPLVEDSAFEPSR ddPTM_HeLa_A486_30min_R1 2 LPLSPPLVEDSAFEPSR 17 0 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 0 LPLS(1)PPLVEDSAFEPSR;LPLS(1)PPLVEDSAFEPSR ; 144.97 7.54E-08 68066000 17944.7 30820 23823 8396.7 25686 26403 25457 19730.7 26074 20401.8 TRUE FALSE FALSE 16686.8692 28377.71096 33047.9036 19547.94195 22464.22237 23145.66631 19087.38934 15238.45033 28334.11531 15293.05649 1.091140232 1.855594464 2.160974402 1.278223353 1.468916458 1.5134755 1.248108209 0.99642935 1.852743782 1 13.90058915 -5.362301167 21.55054609 1.345852303 1.718565818 0.193619242 0.341203992 19.89559828 4240.885355 0.094922341 0.140792566 4.34E-06 5.362301167 0.372713515 LPLS(ph)PPLVEDSAFEPSRK ddPTM_HeLa_A485_30min_R1 5 LPLSPPLVEDSAFEPSRK 18 1 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 0 LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK ;;;; 162.39 3.11E-12 984216000 1072086 964196 869861 1354940 1292130 972653 1288140 1034443 1044517 1814370 TRUE FALSE FALSE 1310567.832 1076950.335 1191658.782 1428956.941 1163481 1023579.607 1012918.366 780744.2323 1254141.981 1362080.95 0.962180575 0.790665441 0.874881028 1.049098397 0.854193725 0.751482213 0.743655042 0.573199583 0.920754366 1 20.37738102 -6.07095288 5.03137043 0.769476867 0.911788933 0.155485231 0.123799627 0.335343246 15.94872683 0.040443178 0.041113589 8.49E-07 6.07095288 0.142312067 LPLS(ph)PPLVEDSAFEPSRK ddPTM_HeLa_A486_30min_R1 4 LPLSPPLVEDSAFEPSRK 18 1 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 0 LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK ;;; 122.19 1.14E-05 1306609000 675621 768193 504012 273461 752857 800277 845577 845680 609207 776539 TRUE FALSE FALSE 628263.4568 707318.589 699178.9443 636631.028 658426.6549 701546.9604 634004.691 653137.1251 662013.5533 582088.58 1.079326203 1.215139093 1.201155577 1.093701285 1.131145117 1.205223714 1.089189365 1.122057961 1.137307235 1 19.15087919 -12.20854307 0.235465707 0.687433744 1.162766205 0.457221783 0.04686976 57.33477924 1.22104172 8.822752565 0.080779938 6.19E-13 12.20854307 0.475332461 LPLVPES(ph)PR ddPTM_HeLa_A485_30min_R1 7 LPLVPESPR 9 0 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR ;;;;;; 173.64 3.70E-06 3401752000 683350 847321 862849 677170 864272 727898 825056 680752 683668 899464 TRUE FALSE FALSE 835358.85 946407.8202 1182052.751 714162.0824 778222.045 766009.6137 648776.0455 513796.5046 820873.8966 675244.1782 1.237121144 1.401578645 1.750556005 1.057635305 1.152504635 1.134418687 0.960802131 0.760904753 1.215669713 1 19.36504977 -5.367851712 8.412797724 1.033880151 1.456212425 0.576193327 0.166153164 0.223908055 15.97625622 0.04833206 0.071767534 4.29E-06 5.367851712 0.422332274 LPLVPES(ph)PR ddPTM_HeLa_A486_30min_R1 7 LPLVPESPR 9 0 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR ;;;;;; 181.53 3.44E-08 3164400000 973123 1115852 892983 274453 1051274 972001 957442 947171 930442 1018709 TRUE FALSE FALSE 904912.1029 1027427.824 1238769.933 638940.4541 919413.4122 852085.3992 717879.8848 731520.8399 1011093.462 763617.6357 1.185033007 1.345474195 1.622238506 0.836728258 1.204023282 1.115853484 0.940103857 0.957967451 1.324083434 1 19.5424909 -5.263820805 24.99988616 1.056426145 1.380371127 0.459155499 0.164166897 190.7090183 2002043.096 0.045297892 0.070907612 5.45E-06 5.263820805 0.323944982 LPLVPES(ph)PRR ddPTM_HeLa_A485_30min_R1 8 LPLVPESPRR 10 1 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR ;;;;;;; 125.03 6.80E-05 17264200000 2558180 2919310 3392260 2836450 3888270 2791620 3439380 3164460 3034690 3534080 TRUE FALSE FALSE 3127238.315 3260697.91 4647198.138 2991398.081 3501140.186 2937784.907 2704528.366 2388371.223 3643724.447 2653098.896 1.178711551 1.229014838 1.75161135 1.127510959 1.319641794 1.107303203 1.019384679 0.900219448 1.373384329 1 21.33924702 -6.162704158 1.764652814 1.062457444 1.349415558 0.272703638 0.195642821 0.471583667 2.910984707 0.079227328 0.077664156 6.88E-07 6.162704158 0.286958115 LPLVPES(ph)PRR ddPTM_HeLa_A486_30min_R1 10 LPLVPESPRR 10 1 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR ;;;;;;;;; 112.5 0.00036935 17505640000 3011010 3666580 3477750 1185174 4309280 3314150 3862380 3781000 3048570 3412320 TRUE FALSE FALSE 2799953.748 3376026.847 4824427.937 2759144.967 3768769.92 2905283.869 2895971.672 2920148.839 3312822.502 2557852.862 1.094650044 1.319867494 1.886124104 1.078695733 1.473411539 1.135829161 1.13218853 1.141640664 1.295157572 1 21.28650185 -6.274475404 24.02005684 1.149267283 1.380163003 0.212682798 0.220186918 772.1516854 1422754.121 0.077385423 0.068706225 5.32E-07 6.274475404 0.23089572 LPLVT(ph)PHTQCR ddPTM_HeLa_A486_30min_R1 1 LPLVTPHTQCR 11 0 P62191 P62191 PSMC1 26S protease regulatory subunit 4 1 0 LPLVT(0.996)PHT(0.004)QCR 60.345 0.037121 55599000 67782 108530 95295 131530 100110 123010 135570 125020 90614 183480 TRUE FALSE FALSE 63030.83183 99929.68754 132195.7761 306208.4872 87553.27031 107834.2769 101648.9521 96555.67517 98468.49448 137535.4137 0.458288016 0.726574231 0.961176271 2.226397397 0.636587101 0.784047351 0.739074754 0.702042278 0.715950109 1 17.06944362 LPNGLGGPNGFPKPTPEEGPPELNRQS(ph)PNSSSAAASVASR ddPTM_HeLa_A485_30min_R1 2 LPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSAAASVASR 40 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 LPNGLGGPNGFPKPTPEEGPPELNRQS(1)PNSSSAAASVASR;LPNGLGGPNGFPKPTPEEGPPELNRQS(0.977)PNS(0.013)S(0.003)S(0.004)AAAS(0.002)VAS(0.002)R ; 274.42 1.63E-79 3174210000 413160 511660 473590 435860 655890 577770 752980 755390 506610 705500 TRUE FALSE FALSE 505066.0166 571494.1861 648790.6487 459669.9281 590587.2886 608021.1438 592099.6717 570129.4181 608281.9801 529631.8338 0.953617182 1.079040476 1.224984239 0.867904644 1.11509024 1.148007172 1.117945777 1.076463652 1.148499658 1 19.01463031 LPNGLGGPNGFPKPTPEEGPPELNRQS(ph)PNSSSAAASVASR ddPTM_HeLa_A486_30min_R1 2 LPNGLGGPNGFPKPTPEEGPPELNRQSPNSSSAAASVASR 40 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 LPNGLGGPNGFPKPTPEEGPPELNRQS(0.999)PNSSSAAASVASR;LPNGLGGPNGFPKPT(0.126)PEEGPPELNRQS(0.744)PNS(0.043)S(0.048)S(0.022)AAAS(0.008)VAS(0.008)R ; 208.9 1.11E-30 2412210000 168318 177201 126054 79552 176760 183837 200617 213801 176359 221776 TRUE FALSE FALSE 156519.7774 163158.9474 174865.4846 185201.0763 154589.1126 161157.0601 150420.5047 165123.1795 191645.9401 166241.8461 0.941518523 0.981455339 1.051874054 1.114046076 0.929904932 0.969413321 0.904829369 0.993270849 1.152814076 1 17.34292405 -7.623175178 11.03746259 1.076157803 0.986580471 0.228723345 0.06665946 0.597711549 61.42267235 0.047066423 0.01775058 2.38E-08 7.623175178 -0.089577332 LPNNS(ph)SRPS(ph)TPTINVLESK ddPTM_HeLa_A486_30min_R1 1 LPNNSSRPSTPTINVLESK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 0 LPNNS(0.539)S(0.461)RPS(0.614)T(0.386)PT(0.001)INVLESK 121.35 1.38E-05 306260000 376840 436540 264790 161590 426280 501330 547580 539690 401960 545870 TRUE FALSE FALSE 350425.462 401946.9805 367323.7793 376189.6863 372811.9875 439481.0017 410569.6923 416814.3683 436802.2164 409180.599 0.856407813 0.982321697 0.897705757 0.919373224 0.911118436 1.074051416 1.003394817 1.018656235 1.067504709 1 18.64237822 -6.250052095 24.94239201 1.032054536 0.916676741 0.726401329 0.036590313 375.1516817 821722.267 0.011478498 0.011381435 5.62E-07 6.250052095 -0.115377795 LPNNSS(ph)RPS(ph)TPTINVLESK ddPTM_HeLa_A485_30min_R1 1 LPNNSSRPSTPTINVLESK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 2 0 LPNNS(0.469)S(0.531)RPS(0.591)T(0.407)PT(0.003)INVLESK 74.206 0.004768 317970000 335590 268210 306730 470200 440080 367710 463450 397850 350130 682920 TRUE FALSE FALSE 410240.8377 299574.8264 420202.1911 495885.8354 396264.09 386962.727 364430.1215 300276.6637 420397.8794 512680.6122 0.80018793 0.58433032 0.819617869 0.967241248 0.772925834 0.754783227 0.710832656 0.585699277 0.819999566 1 18.96770082 -11.18075996 1.616383572 1.481708678 0.754184296 0.314087457 0.107513238 436559.4444 77102.33397 767240.6916 0.031188714 6.60E-12 11.18075996 -0.727524382 LPNNSSRPS(ph)TPTINVLESK ddPTM_HeLa_A485_30min_R1 2 LPNNSSRPSTPTINVLESK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 LPNNS(0.016)S(0.016)RPS(0.475)T(0.475)PT(0.019)INVLESK;LPNNS(0.012)S(0.012)RPS(0.488)T(0.488)PT(0.001)INVLESK ; 92.95 0.00024691 575020000 307271 241810 234079 402080 368300 253624 306989 240351 266704 476590 TRUE FALSE FALSE 375622.3739 270087.576 320674.5629 424044.6123 331630.7588 266903.3605 241398.2923 181404.5404 320229.0464 357784.884 1.049855348 0.754888169 0.89627756 1.18519432 0.92689986 0.745988365 0.674702323 0.507021254 0.895032353 1 18.44873291 -6.247275654 4.596225403 0.726433348 0.961865118 0.261767279 0.161032269 0.246250404 14.08079227 0.056132026 0.053383185 5.66E-07 6.247275654 0.23543177 LPNNSSRPST(ph)PTINVLESK ddPTM_HeLa_A485_30min_R1 1 LPNNSSRPSTPTINVLESK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 LPNNS(0.003)S(0.002)RPS(0.203)T(0.774)PT(0.018)INVLESK 138.08 1.40E-06 391970000 327320 281570 254190 400640 342230 240480 329180 255290 288230 511150 TRUE FALSE FALSE 400131.2048 314497.1622 348225.4587 422525.9487 308156.3796 253071.1609 258848.0038 192679.7272 346075.1172 383729.712 1.042742306 0.819579908 0.907475882 1.10110303 0.803055823 0.65950369 0.674558148 0.502123555 0.90187209 1 18.54973095 -5.975134337 9.001282344 0.713983664 0.953085067 0.322009929 0.147096072 0.273347885 89.8469637 0.044410246 0.05001933 1.06E-06 5.975134337 0.239101403 LPNNSSRPST(ph)PTINVLESK ddPTM_HeLa_A486_30min_R1 2 LPNNSSRPSTPTINVLESK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 LPNNSS(0.001)RPS(0.151)T(0.827)PT(0.02)INVLESK;LPNNSSRPS(0.051)T(0.948)PT(0.001)INVLESK ; 124.81 6.83E-06 1082780000 823340 957820 532070 299750 782670 883320 941460 862810 682720 953680 TRUE FALSE FALSE 765628.1177 881918.8549 738101.7533 697833.1485 684500.2305 774344.9593 705896.7503 666366.998 741898.7193 714872.3206 1.070999807 1.233673244 1.03249452 0.976164734 0.957513965 1.083193372 0.987444513 0.932148272 1.03780591 1 19.44732607 -4.92040755 6.529073642 0.995787665 1.15098077 0.568421278 0.053566636 0.135758371 8.934086867 0.013566294 0.028684492 1.20E-05 4.92040755 0.155193105 LPNS(ph)IASR ddPTM_HeLa_A485_30min_R1 2 LPNSIASR 8 0 Q9ULT0;Q9ULT0-4;H7C055;G5E9G4 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 LPNS(1)IASR;LPNS(1)IASR ; 113.27 0.0010796 205237000 188347 194973 192959 175528 293220 158172 225670 229510 189104 212149 TRUE FALSE FALSE 230244.1404 217773.3963 264342.5638 185116.6502 264025.9872 166453.6413 177453.7609 173222.3126 227055.4382 159264.1586 1.445674547 1.367372284 1.65977434 1.162324605 1.657786595 1.045141875 1.114210269 1.087641527 1.42565308 1 17.28106211 -6.275152254 24.94499405 1.138736995 1.448237137 0.474127993 0.17043821 702.0031221 1277004.998 0.056830117 0.050380888 5.31E-07 6.275152254 0.309500142 LPNS(ph)IASR ddPTM_HeLa_A486_30min_R1 2 LPNSIASR 8 0 Q9ULT0;Q9ULT0-4;H7C055;G5E9G4 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 LPNS(0.999)IAS(0.001)R;LPNS(1)IASR ; 100.69 0.0021214 400720000 217540 232000 215490 82872 256090 233080 262360 288130 167536 196583 TRUE FALSE FALSE 202291.5694 213615.4751 298933.499 192930.2041 223968.8043 204324.9594 196714.753 222529.0888 182058.1554 147357.3373 1.372796042 1.449642611 2.028629891 1.309267714 1.519902629 1.386595084 1.334950513 1.510132396 1.235487549 1 17.16895937 -8.326833887 0.353604094 0.937417926 1.579640286 0.406965134 0.192124238 2.316107508 0.659520891 0.478251289 0.193083241 4.71E-09 8.326833887 0.64222236 LPNTYPNSS(ph)SPGPGGLGGSVHYATMAR ddPTM_HeLa_A485_30min_R1 2 LPNTYPNSSSPGPGGLGGSVHYATMAR 27 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 LPNTYPNS(0.001)S(0.807)S(0.192)PGPGGLGGSVHYATMAR;LPNT(0.006)Y(0.008)PNS(0.101)S(0.442)S(0.442)PGPGGLGGS(0.002)VHYATMAR ; 180.83 3.05E-20 700120000 165469 215377 290066 107351 282729 227674 278860 263840 225026 241614 TRUE FALSE FALSE 202277.0082 240563.4666 397373.4841 113215.3133 254579.508 239594.6586 219279.2829 199132.8263 270186.6541 181384.0764 1.115186141 1.326265632 2.190784836 0.62417449 1.403538354 1.320924435 1.208922455 1.097851754 1.489583096 1 17.46868828 -5.272844923 24.99984545 1.186092577 1.522297599 0.203956302 0.341658098 1278.203501 2801696.039 0.094890049 0.14215342 5.34E-06 5.272844923 0.336205022 LPNTYPNSS(ph)SPGPGGLGGSVHYATMAR ddPTM_HeLa_A486_30min_R1 2 LPNTYPNSSSPGPGGLGGSVHYATMAR 27 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 LPNTYPNS(0.085)S(0.457)S(0.457)PGPGGLGGSVHYATMAR;LPNTYPNS(0.037)S(0.925)S(0.037)PGPGGLGGSVHYATMAR ; 194.77 4.11E-21 1544520000 450050 652720 644910 63507 808350 469740 534460 558950 597880 341930 TRUE FALSE FALSE 418503.8191 600996.09 894636.4233 147847.5055 706959.2054 411788.2548 400732.4551 431689.2868 649704.7198 256308.5024 1.632812861 2.344815269 3.49046721 0.576834183 2.758235481 1.606611762 1.563477026 1.6842566 2.53485434 1 17.96752181 -5.254300585 24.99382692 1.741057875 2.474909973 0.202004199 0.733457119 984.9847763 3448548.928 0.193469937 0.326254238 5.57E-06 5.254300585 0.733852097 LPNTYPNSSS(ph)PGPGGLGGSVHYATMAR ddPTM_HeLa_A485_30min_R1 1 LPNTYPNSSSPGPGGLGGSVHYATMAR 27 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 LPNTYPNS(0.004)S(0.221)S(0.774)PGPGGLGGSVHYATMAR 162.87 8.28E-14 663140000 84667 127390 144930 52619 150460 96043 134840 129540 102800 99881 TRUE FALSE FALSE 103500.8821 142287.1524 198545.638 55493.44273 135479.6741 101071.663 106030.3325 97770.11189 123431.0171 74982.50487 1.380333749 1.897604683 2.647892843 0.740085208 1.806817128 1.347936604 1.414067623 1.303905652 1.646130884 1 16.1942664 -5.264888296 24.99992196 1.360398204 1.967509828 0.353864138 0.401798357 344.9351808 2500311.423 0.109292407 0.169723316 5.43E-06 5.264888296 0.607111624 LPPKVESLESLYFT(ph)PIPAR ddPTM_HeLa_A485_30min_R1 2 LPPKVESLESLYFTPIPAR 19 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LPPKVESLESLYFT(1)PIPAR;LPPKVESLES(0.002)LYFT(0.997)PIPAR ; 212.32 4.21E-26 492530000 467370 409870 419630 488420 702650 616190 691920 722640 414980 600780 TRUE FALSE FALSE 571334.8441 457800.7311 574868.5993 515101.1479 632691.6988 648452.7556 544085.6395 545411.4069 498262.6796 451016.6025 1.266771203 1.01504186 1.274606292 1.142089105 1.402812436 1.43775806 1.206353905 1.209293414 1.104754629 1 18.78282102 -7.897526696 1.837250909 1.001651337 1.249251572 0.339765399 0.113202309 0.409912927 3.008565839 0.115755344 0.033268028 1.27E-08 7.897526696 0.247600235 LPPKVESLESLYFT(ph)PIPAR ddPTM_HeLa_A486_30min_R1 2 LPPKVESLESLYFTPIPAR 19 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LPPKVESLESLYFT(1)PIPAR;LPPKVESLESLYFT(1)PIPAR ; 196.8 4.70E-20 619970000 605250 723930 596650 315280 940480 775120 930860 1001810 638010 790450 TRUE FALSE FALSE 562825.1005 666563.1503 827688.8588 733987.7734 822516.2288 679493.5752 697948.9824 773719.7324 693313.2205 592516.175 0.94988985 1.124970386 1.396905087 1.238764112 1.388175148 1.146793293 1.177940809 1.30582044 1.170116952 1 19.17649501 -9.79686249 13.7615135 1 1.219926397 0.198594841 0.126051714 0 0 0.124955952 0.03030627 1.60E-10 9.79686249 0.219926397 LPPQQHIYAYPQQMHT(ph)PPVQSSSACMFSQEMYGPPALR ddPTM_HeLa_A485_30min_R1 1 LPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALR 38 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 LPPQQHIYAYPQQMHT(0.999)PPVQSSS(0.001)ACMFSQEMYGPPALR 217.41 2.79E-39 256410000 76137 116510 108400 96678 132330 97790 119400 90071 77901 108930 TRUE FALSE FALSE 93073.41298 130134.831 148501.6709 101959.2743 119154.7606 102910.1332 93889.21459 67980.94602 93535.01615 81775.75571 1.138154116 1.59136201 1.815962074 1.246815434 1.457091525 1.258443072 1.148130198 0.831309297 1.14379886 1 16.31938557 -6.595018798 1.368625969 0.985061635 1.483028328 0.53025055 0.187707181 0.327522026 1.25031574 0.105692451 0.071797262 2.54E-07 6.595018798 0.497966693 LPPQQHIYAYPQQMHT(ph)PPVQSSSACMFSQEMYGPPALR ddPTM_HeLa_A486_30min_R1 1 LPPQQHIYAYPQQMHTPPVQSSSACMFSQEMYGPPALR 38 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 LPPQQHIY(0.006)AY(0.028)PQQMHT(0.948)PPVQS(0.006)S(0.006)S(0.006)ACMFSQEMYGPPALR 159.91 2.61E-12 181160000 33590 49682 45607 8980.7 58486 46589 49810 51922 38808 44777 TRUE FALSE FALSE 31235.51446 45745.01738 63267.2518 20907.52346 51150.14052 40841.32286 37347.01116 40100.49405 42171.90869 33564.54775 0.930610318 1.362896879 1.884942776 0.622904966 1.523933553 1.216799439 1.11269222 1.194727674 1.256442035 1 15.03465058 -9.731359992 0.254929691 0.866854664 1.293047253 0.045192684 0.317566817 42.89905187 2.990856843 4.936085289 0.526267554 1.86E-10 9.731359992 0.426192589 LPPTFFCGVCS(ph)DTDEDNGNGEDFQSELQK ddPTM_HeLa_A486_30min_R1 1 LPPTFFCGVCSDTDEDNGNGEDFQSELQK 29 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 LPPT(0.001)FFCGVCS(0.5)DT(0.5)DEDNGNGEDFQSELQK 110.49 0.00015315 68599000 16728 25309 18336 10885 30852 26534 34027 30213 22654 26056 TRUE FALSE FALSE 15555.45358 23303.42267 25436.19026 25340.8301 26982.25448 23260.50486 25513.0847 23334.15945 24617.66696 19531.408 0.79643278 1.193125588 1.302322406 1.297440005 1.381480253 1.190928214 1.306259369 1.194699299 1.260414352 1 14.25350834 -4.26807001 3.509436937 1.25602892 0.74422099 0.645377541 0.097900448 0.157661394 3.435635502 0.0231267 0.212307162 5.39E-05 4.26807001 -0.51180793 LPPTFFCGVCSDT(ph)DEDNGNGEDFQSELQK ddPTM_HeLa_A486_30min_R1 1 LPPTFFCGVCSDTDEDNGNGEDFQSELQK 29 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 LPPTFFCGVCS(0.456)DT(0.544)DEDNGNGEDFQSELQK 160.47 9.11E-14 68054000 29669 41952 29783 20022 44581 41012 55908 46740 32714 41139 TRUE FALSE FALSE 27589.35631 38627.57073 41315.77522 46612.22786 38989.23528 35952.35642 41919.22707 36098.32233 35549.67586 30837.52663 0.894668261 1.252615724 1.339788878 1.511542362 1.26434379 1.165863814 1.359357628 1.1705972 1.15280568 1 14.91239944 -7.97837623 1.423857024 1.003125777 1.26517277 0.204678469 0.150592144 0.677183019 3.102596531 0.148339741 0.044558303 1.05E-08 7.97837623 0.262046994 LPQLPITNFS(ph)R ddPTM_HeLa_A486_30min_R1 2 LPQLPITNFSR 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 1 0 LPQLPIT(0.025)NFS(0.975)R;LPQLPIT(0.341)NFS(0.659)R ; 75.479 0.010077 69303000 97297 97315 61352 50496 87241 85395 101640 91917 71078 113554 TRUE FALSE FALSE 90476.98274 89603.40498 85109.13746 117557.2399 76298.42029 74859.83313 76208.59696 70989.50563 77239.09827 85119.33929 1.062942728 1.052679752 0.999880147 1.381087317 0.896369978 0.879469152 0.895314715 0.833999726 0.907421262 1 16.37719933 -5.932894886 24.99995146 0.891869164 1.113737796 0.524832571 0.103051544 42.97642013 16010.20696 0.031460703 0.035673082 1.17E-06 5.932894886 0.221868632 LPQLPITNFSR ddPTM_HeLa_A485_30min_R1 2 LPQLPITNFSR 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 113.44 0.0058781 43946000 24708 30333 46353 24893 50238 30790 38616 35789 38095 37338 FALSE FALSE TRUE 30204.20936 33880.18049 63500.90361 26252.84156 45236.12832 32402.11679 30365.37614 27011.69164 45740.31707 28030.32375 1.07755478 1.208697437 2.265435967 0.936587168 1.61382825 1.155966555 1.08330451 0.963659638 1.631815511 1 14.77470079 -6.294480081 21.52555412 1.159449782 1.428723929 0.099935225 0.379602208 291.6292609 189989.7493 0.132085136 0.116509371 5.08E-07 6.294480081 0.269274147 LPQT(ph)SDDEKKDF ddPTM_HeLa_A486_30min_R1 1 LPQTSDDEKKDF 12 2 Q9GZT3-2;Q9GZT3 Q9GZT3-2 SLIRP "SRA stem-loop-interacting RNA-binding protein, mitochondrial" 1 0 LPQT(0.611)S(0.389)DDEKKDF 102.38 0.0040133 1847800000 1112500 1133600 380100 1206800 866410 1387700 2364400 1826600 826450 2788900 TRUE FALSE FALSE 1034519.495 1043769.407 527284.8994 2809491.388 757736.7788 1216499.683 1772802.112 1410723.054 898087.3514 2090541.287 0.494857242 0.499281891 0.252224102 1.343906196 0.36245961 0.581906557 0.84801105 0.674812338 0.429595606 1 20.99544511 -14 0.158781935 2.282486831 0.522761057 0.130406097 0.292626894 297.6459131 2.724075898 122.6378376 1.269401755 1.00E-14 14 -1.759725774 LPQTS(ph)DDEKKDF ddPTM_HeLa_A485_30min_R1 3 LPQTSDDEKKDF 12 2 Q9GZT3-2;Q9GZT3 Q9GZT3-2 SLIRP "SRA stem-loop-interacting RNA-binding protein, mitochondrial" 1 0 LPQT(0.485)S(0.515)DDEKKDF;LPQT(0.057)S(0.943)DDEKKDF;LPQT(0.177)S(0.823)DDEKKDF ;; 147.64 1.15E-07 1883590000 1773750 1137300 713411 4079380 1680160 1792250 3230780 2955350 1199880 5937720 TRUE FALSE FALSE 2168314.568 1270297.342 977331.4164 4302226.2 1512877.371 1886089.439 2540497.46 2230545.779 1440684.91 4457555.68 0.486435779 0.284976214 0.219252767 0.965153665 0.33939618 0.423121902 0.569930617 0.500396616 0.323200654 1 22.08782139 -11.14856206 2.429698822 2.240071849 0.459935914 0.40322119 0.198192845 23447426.04 5982416.783 160145972.7 0.04953402 7.10E-12 11.14856206 -1.780135935 LPQTS(ph)DDEKKDF ddPTM_HeLa_A486_30min_R1 2 LPQTSDDEKKDF 12 2 Q9GZT3-2;Q9GZT3 Q9GZT3-2 SLIRP "SRA stem-loop-interacting RNA-binding protein, mitochondrial" 1 0 LPQT(0.139)S(0.861)DDEKKDF;LPQT(0.038)S(0.962)DDEKKDF ; 114.29 0.00021509 530180000 498060 467090 166739 509760 387270 654700 946560 847780 399500 1284790 TRUE FALSE FALSE 463148.566 430076.0873 231304.8062 1186747.042 338694.9855 573929.7705 709720.6763 654759.0009 434128.9817 963070.2214 0.480908407 0.446567735 0.240174393 1.232253906 0.351682544 0.595937615 0.736935543 0.679866313 0.450776041 1 19.87728147 -14 0.124013931 2.240855167 0.411480911 0.190771641 0.259381285 266.1624399 2.11394487 84.25322923 2.265898371 1.00E-14 14 -1.829374256 LPRLS(ph)CEPVMEEK ddPTM_HeLa_A486_30min_R1 1 LPRLSCEPVMEEK 13 1 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 LPRLS(1)CEPVMEEK 124.63 1.54E-05 125250000 124000 215580 165650 110420 266290 238290 316730 300930 143700 187110 TRUE FALSE FALSE 115308.2403 198496.6557 229794.1163 257063.3403 232889.4251 208892.2026 237480.804 232414.8083 156156.0317 140256.4381 0.822124402 1.415240957 1.638385513 1.832809558 1.660454438 1.489359101 1.693190039 1.657070516 1.113360882 1 17.09770747 -7.854443781 5.145982664 1.012850914 1.544591208 0.340306576 0.261677685 0.235169695 9.510104033 0.261478074 0.068595391 1.40E-08 7.854443781 0.531740294 LPS(ph)GSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A485_30min_R1 4 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 LPS(0.993)GS(0.007)GAAS(0.976)PT(0.022)GS(0.001)AVDIR;LPS(1)GSGAAS(0.998)PT(0.002)GSAVDIR;LPS(0.997)GS(0.003)GAAS(0.958)PT(0.042)GSAVDIR;LPS(1)GSGAAS(0.989)PT(0.011)GSAVDIR ;;; 203.23 5.98E-25 2684160000 1189630 1421420 1526480 1351360 1728880 1385100 1561580 1350340 1357240 1789740 TRUE FALSE FALSE 1454259.089 1587642.704 2091188.474 1425181.375 1556746.637 1457621.694 1227935.676 1019166.998 1629625.619 1343590.756 1.082367591 1.181641581 1.55641773 1.060725797 1.158646433 1.084870291 0.913920903 0.758539751 1.212888383 1 20.35766234 -6.174080304 1.444272472 0.95726363 1.245963757 0.315913235 0.164269232 0.463309721 1.94774242 0.07323354 0.0710732 6.70E-07 6.174080304 0.288700127 LPS(ph)GSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A486_30min_R1 5 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 LPS(0.921)GS(0.079)GAAS(0.985)PT(0.015)GS(0.001)AVDIR;LPS(0.706)GS(0.294)GAAS(0.875)PT(0.067)GS(0.058)AVDIR;LPS(0.97)GS(0.03)GAAS(0.979)PT(0.021)GSAVDIR;LPS(0.999)GS(0.001)GAAS(0.975)PT(0.025)GSAVDIR;LPS(1)GSGAAS(0.973)PT(0.027)GSAVDIR ;;;; 211.11 2.12E-25 4207240000 1691621 2122917 1929228 621156 2584104 1966174 2029011 2304435 1860290 2188901 TRUE FALSE FALSE 1573047.103 1954689.325 2676276.748 1446082.559 2259981.581 1723607.442 1521330.987 1779765.456 2021541.435 1640785.942 0.958715615 1.191312818 1.631094392 0.881335293 1.377377464 1.050476725 0.927196503 1.084703013 1.232056774 1 20.64595561 -6.380631447 21.48598987 1.055933941 1.212597133 0.114501369 0.207006259 14.67730995 2595.467886 0.072366803 0.06382146 4.16E-07 6.380631447 0.156663192 LPS(ph)GSGAASPTGSAVDIR ddPTM_HeLa_A485_30min_R1 1 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LPS(0.994)GS(0.006)GAASPTGSAVDIR 176.82 5.33E-13 518870000 57558 73656 81361 71474 98682 78646 90573 74526 66874 124630 TRUE FALSE FALSE 70361.57853 82269.42848 111459.8196 75378.44364 88856.87359 82763.78295 71221.33864 56248.38165 80294.9984 93562.03465 0.7520313 0.879303542 1.191293242 0.805652035 0.949710787 0.88458725 0.761220498 0.601188098 0.858200644 1 16.51363562 -6.661773702 4.289883496 0.772096414 0.922147477 0.098690478 0.143679899 0.378730305 12.49563546 0.057215813 0.043035634 2.18E-07 6.661773702 0.150051063 LPS(ph)IVVEPTEGEVESGELR ddPTM_HeLa_A485_30min_R1 1 LPSIVVEPTEGEVESGELR 19 0 B5MBX5;B5MCP4;Q53QV2 B5MBX5 LBH Protein LBH 1 0 LPS(1)IVVEPTEGEVESGELR 142.39 2.70E-08 15141000 11128 6452 10529 9883.1 10133 7673.5 11296 8737.2 13678 13992 TRUE FALSE FALSE 13603.38521 7206.505275 14424.11525 10422.98873 9124.122941 8075.272595 8882.51732 6594.388001 16423.04914 10504.0519 1.295060738 0.686069085 1.373195352 0.992282676 0.86862889 0.768776913 0.845627706 0.627794689 1.563496571 1 13.35865833 -4.217691618 22.17151043 0.957935091 1.295065755 0.107540624 0.279529642 15217.59173 7711581.244 0.067181729 23.33700185 6.06E-05 4.217691618 0.337130665 LPS(ph)IVVEPTEGEVESGELR ddPTM_HeLa_A486_30min_R1 2 LPSIVVEPTEGEVESGELR 19 0 B5MBX5;B5MCP4;Q53QV2 B5MBX5 LBH Protein LBH 1 0 LPS(1)IVVEPTEGEVESGELR;LPS(1)IVVEPTEGEVESGELR ; 131.45 3.47E-06 81891000 24307.5 29218 17120.9 10410.6 31678.9 36175 35349.6 43057 28850.7 32390 TRUE FALSE FALSE 22603.66977 26902.65927 23750.57099 24236.40292 27705.43697 31712.0963 26504.75619 33253.86103 31351.50191 24279.33318 0.930983961 1.108047699 0.978221717 0.998231819 1.141111939 1.30613539 1.091659149 1.369636505 1.291283483 1 14.56744118 -5.923376468 3.737489324 1.227638369 1.009897345 0.444192523 0.108735977 0.200784683 5.559142175 0.0338419 0.038439429 1.19E-06 5.923376468 -0.217741024 LPS(ph)KPKEEVPHAEEFLDDSTVWGIR ddPTM_HeLa_A485_30min_R1 1 LPSKPKEEVPHAEEFLDDSTVWGIR 25 2 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 LPS(1)KPKEEVPHAEEFLDDSTVWGIR 106.1 0.00017765 59364000 18979 17410 11163 37514 26696 22153 38154 38830 20510 48891 TRUE FALSE FALSE 23200.81307 19445.94805 15292.65823 39563.29483 24038.0525 23312.89682 30002.08621 29306.88162 24626.16887 36703.37347 0.632116639 0.529813644 0.416655386 1.07791985 0.654927606 0.635170411 0.8174204 0.798479236 0.670951102 1 15.16362505 -5.991534203 0.070700641 1.392119723 6.00E-16 0.299138705 0.161423453 75.00464117 1.801217916 13.55697962 21.47096412 1.02E-06 5.991534203 -1.392119723 LPS(ph)LGNKEPPGQEK ddPTM_HeLa_A485_30min_R1 3 LPSLGNKEPPGQEK 14 1 Q9UPY5 Q9UPY5 SLC7A11 Cystine/glutamate transporter 1 0 LPS(1)LGNKEPPGQEK;LPS(1)LGNKEPPGQEK;LPS(1)LGNKEPPGQEK ;; 114.21 9.68E-05 637840000 1313400 612960 373583 1826100 614950 741360 1566530 1136690 1008760 4303390 TRUE FALSE FALSE 1605561.299 684640.34 511786.8978 1925855.219 553723.4188 780176.4632 1231828.068 857914.9952 1211208.879 3230634.071 0.496980241 0.211921352 0.158416858 0.596122983 0.171397752 0.241493294 0.381296068 0.265556227 0.374913671 1 21.62338592 -8.188452579 5.259952821 0.999998736 0.311316184 0.697980477 0.134278464 2.18640611 60.79563999 0.125028115 0.03253462 6.48E-09 8.188452579 -0.688682551 LPS(ph)LGNKEPPGQEK ddPTM_HeLa_A486_30min_R1 3 LPSLGNKEPPGQEK 14 1 Q9UPY5 Q9UPY5 SLC7A11 Cystine/glutamate transporter 1 0 LPS(1)LGNKEPPGQEK;LPS(1)LGNKEPPGQEK;LPS(1)LGNKEPPGQEK ;; 137.05 3.86E-06 1053550000 1531860 1395510 568920 695400 1210780 2728350 2532710 2481840 1489540 3419020 TRUE FALSE FALSE 1424484.525 1284924.705 789221.0602 1618926.344 1058912.682 2391753.917 1898999.17 1916779.21 1618654.527 2562875.138 0.555815031 0.501360634 0.307943625 0.631683659 0.413173731 0.933230762 0.740964373 0.74790191 0.631577599 1 21.28933176 -6.252938648 24.98671257 0.79061814 0.481717656 0.630681908 0.125309608 432.0961899 1270087.316 0.040598 0.039973833 5.59E-07 6.252938648 -0.308900484 LPS(ph)PDVR ddPTM_HeLa_A485_30min_R1 1 LPSPDVR 7 0 Q9H425;Q9H425-2;Q9H425-3;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 LPS(1)PDVR 90.657 0.0066722 94536000 141890 106560 105500 154360 125090 75426 93439 65225 98406 169900 TRUE FALSE FALSE 173452.941 119021.2651 144528.8402 162792.2959 112635.6004 79375.18873 73474.99432 49228.46648 118155.1816 127547.0568 1.359913316 0.933155716 1.13314132 1.276331262 0.883090549 0.622320818 0.576061857 0.385963171 0.92636541 1 16.96067008 -5.993300638 3.742830091 0.659726459 1.153796453 0.561047521 0.194849249 0.158452697 4.894382477 0.062882347 0.068405588 1.02E-06 5.993300638 0.494069993 LPS(ph)PDVR ddPTM_HeLa_A486_30min_R1 2 LPSPDVR 7 0 Q9H425;Q9H425-2;Q9H425-3;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 LPS(1)PDVR;LPS(1)PDVR ; 93.649 0.0059934 193550000 240220 309550 226680 76712 239210 279090 268930 261160 248540 246830 TRUE FALSE FALSE 223381.8185 285020.1306 314456.5667 178589.4128 209206.0513 244658.7134 201640.8695 201699.5691 270083.6473 185022.1614 1.207324662 1.54046482 1.699561633 0.965232551 1.130708071 1.322321129 1.089820095 1.090137352 1.459736743 1 17.49733856 -5.26333052 24.99798577 1.158618939 1.488251813 0.420860739 0.177912565 161.4879542 2134633.994 0.049199946 0.077360065 5.45E-06 5.26333052 0.329632874 LPS(ph)PDVRQDDGEDTLFSEPK ddPTM_HeLa_A485_30min_R1 1 LPSPDVRQDDGEDTLFSEPK 20 1 Q9H425;Q9H425-2;Q9H425-3;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 LPS(1)PDVRQDDGEDTLFSEPK 117.82 5.59E-06 46236000 68736 63459 44639 76948 93821 69798 86001 94772 60126 99581 TRUE FALSE FALSE 84026.08606 70879.97803 61152.82368 81151.4744 84479.85181 73452.51535 67626.18379 71529.0184 72192.73669 74757.28935 1.12398519 0.948134672 0.818018205 1.085532596 1.130055043 0.982546531 0.904609897 0.95681664 0.965694949 1 16.18992664 -9.255334239 8.936533302 1 0.987408669 0 0.093355048 0 0 0.095143387 0.023075661 5.55E-10 9.255334239 -0.012591331 LPS(ph)PDVRQDDGEDTLFSEPK ddPTM_HeLa_A486_30min_R1 2 LPSPDVRQDDGEDTLFSEPK 20 1 Q9H425;Q9H425-2;Q9H425-3;E5RFY9 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 LPS(1)PDVRQDDGEDTLFSEPK;LPS(1)PDVRQDDGEDTLFSEPK ; 119.52 3.28E-06 100758000 99499 105734 57446 45471 101071 96695 127129 125379 68831 122664 TRUE FALSE FALSE 92524.63391 97355.25276 79690.62966 105858.786 88393.73273 84765.75402 95319.97957 96832.9387 74797.3265 91948.13599 1.006269816 1.05880616 0.866691084 1.151288004 0.96134339 0.921886595 1.036671147 1.053125631 0.813473005 1 16.48853271 LPS(ph)PGLHGQR ddPTM_HeLa_A485_30min_R1 2 LPSPGLHGQR 10 0 P10070-4;P10070-3;P10070-2;P10070-1;P10070 P10070-4 GLI2 Zinc finger protein GLI2 1 0 LPS(1)PGLHGQR;LPS(1)PGLHGQR ; 141.58 4.81E-06 291710000 150880 207315 203308 151466 221666 188709 187690 178378 183419 198690 TRUE FALSE FALSE 184442.7355 231558.6858 278520.0896 159740.204 199596.1547 198589.5114 147588.4982 134630.5158 220229.5109 149160.2396 1.23654089 1.55241562 1.867254238 1.070930192 1.338132436 1.331383698 0.989462732 0.902589833 1.476462571 1 17.18650349 -5.284269015 24.88407416 1.16201886 1.552104841 0.399450202 0.221156399 741.1378209 807831.1 0.063329949 0.094006327 5.20E-06 5.284269015 0.390085981 LPS(ph)PGLHGQR ddPTM_HeLa_A486_30min_R1 2 LPSPGLHGQR 10 0 P10070-4;P10070-3;P10070-2;P10070-1;P10070 P10070-4 GLI2 Zinc finger protein GLI2 1 0 LPS(1)PGLHGQR;LPS(1)PGLHGQR ; 158.25 8.52E-07 263800000 183017 220832 186097 64881 237185 180994 198468 191615 176331 183848 TRUE FALSE FALSE 170188.4534 203332.4681 258158.7423 151046.2469 207435.0456 158664.8005 148809.2072 147988.4474 191615.5131 137811.2642 1.234938627 1.475441571 1.873277514 1.096037017 1.505211108 1.151319535 1.079804384 1.073848704 1.39041982 1 17.07233429 -6.077767781 1.381629022 1.134190008 1.480137215 0.3081578 0.214630905 0.514781035 2.008724047 0.092644304 0.097498555 8.36E-07 6.077767781 0.345947207 LPS(ph)PTPENKDLFFVTR ddPTM_HeLa_A485_30min_R1 2 LPSPTPENKDLFFVTR 16 1 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 LPS(0.97)PT(0.03)PENKDLFFVTR;LPS(0.997)PT(0.003)PENKDLFFVTR ; 119.38 3.58E-05 462710000 364540 401850 320210 389530 519180 437750 531540 513960 368920 578500 TRUE FALSE FALSE 445630.6654 448842.8619 438669.004 410809.0376 467488.6162 460669.9131 417972.1367 387910.5041 442958.8601 434290.5965 1.026111707 1.033508129 1.010081746 0.945931229 1.076441949 1.060741165 0.962425022 0.893204935 1.019959593 1 18.72830119 -6.815049569 11.80600492 0.959922889 1.023826149 0.267036516 0.044893793 0.94529542 205.3265663 0.019087705 0.012874393 1.53E-07 6.815049569 0.06390326 LPS(ph)PTSPFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 1 LPSPTSPFSSLSQDQAATSK 20 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LPS(0.811)PT(0.15)S(0.039)PFSSLSQDQAATSK 157.57 3.40E-10 104950000 74756 84019 51989 27470 54684 85575 69698 73854 65446 71702 TRUE FALSE FALSE 69515.99044 77361.02845 72120.53311 63951.54826 47825.02281 75017.62656 52258.82321 57039.05642 71118.91197 53747.3525 1.293384459 1.439345844 1.341843454 1.189854854 0.889811695 1.395745522 0.972305068 1.06124402 1.323207724 1 15.71390607 -5.323821795 3.749186817 1.112922334 1.369347715 0.359223995 0.148935651 0.244506313 6.87678934 0.041381983 0.065756632 4.74E-06 5.323821795 0.256425381 LPS(ph)PTVAR ddPTM_HeLa_A485_30min_R1 1 LPSPTVAR 8 0 O95425-3;O95425;A0A6I8PIX7 O95425-3 SVIL Supervillin 1 0 LPS(0.983)PT(0.017)VAR 74.165 0.0080027 0 112910 169390 167720 136250 196130 171340 180730 200950 153240 191960 TRUE FALSE FALSE 138026.44 189198.687 229766.6074 143692.9925 176602.6085 180311.0975 142115.5591 151666.6974 183993.8624 144107.9048 0.957799228 1.312895967 1.59440669 0.997120822 1.225488698 1.251222809 0.986174626 1.052452311 1.276778416 1 17.13678995 -6.332273391 1.243095111 1.090336697 1.25044701 0.09342679 0.183848413 1.081955692 3.413579606 0.096682022 0.081850295 4.65E-07 6.332273391 0.160110314 LPS(ph)RPPLPGSGGSQSGAK ddPTM_HeLa_A485_30min_R1 1 LPSRPPLPGSGGSQSGAK 18 1 Q9Y570-4;Q9Y570 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 LPS(0.959)RPPLPGS(0.032)GGS(0.009)QS(0.001)GAK 46.273 0.027161 243450000 130270 191100 169030 165380 211750 157400 218810 221860 171100 175260 TRUE FALSE FALSE 159248.1121 213447.4827 231561.2309 174414.2906 190667.4265 165641.2206 172059.456 167448.4871 205438.2006 131570.9074 1.210359609 1.622299997 1.759972896 1.32562961 1.44916099 1.258950203 1.307731773 1.272686268 1.561425733 1 17.00548099 -5.409360784 24.98018636 1.325610849 1.540490381 0.222886313 0.186631143 32.82459139 7179.76731 0.051120953 0.07582463 3.90E-06 5.409360784 0.214879533 LPS(ph)SPLGCR ddPTM_HeLa_A486_30min_R1 1 LPSSPLGCR 9 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 LPS(0.794)S(0.206)PLGCR 179.09 3.96E-08 457220000 238560 313250 269930 83203 338560 265410 291320 296960 239860 258410 TRUE FALSE FALSE 221838.1759 288426.9292 374454.125 193700.7888 296094.6479 232666.4127 218428.6547 229348.6906 260651.2579 193702.454 1.145252274 1.489020522 1.933140841 0.999991403 1.528605558 1.201153666 1.127650426 1.184025735 1.34562703 1 17.56348271 -6.044019728 1.181993606 1.173914417 1.46742749 0.185561448 0.246755115 0.804056719 2.352727626 0.114706158 0.126370931 9.04E-07 6.044019728 0.293513073 LPSANQGS(ph)PFK ddPTM_HeLa_A485_30min_R1 2 LPSANQGSPFK 11 0 E5RFE4;Q56NI9;E5RFP7;E5RIE3 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 LPS(0.001)ANQGS(0.999)PFK;LPSANQGS(1)PFK ; 99.991 0.0013966 269170000 340580 276300 217876 593390 382230 294290 451040 343650 322210 764030 TRUE FALSE FALSE 416340.846 308610.8815 298477.399 625805.3932 344173.8391 309698.5693 354671.6193 259369.2987 386874.5915 573571.3819 0.72587451 0.538051394 0.52038405 1.091068022 0.600054065 0.539947736 0.618356547 0.452200558 0.674501211 1 19.12961352 -8.040959128 22.13209034 1.000000006 0.634136711 0.294307461 0.168153819 2440.175813 1318538.322 0.166868905 0.043085366 9.10E-09 8.040959128 -0.365863295 LPSANQGS(ph)PFK ddPTM_HeLa_A486_30min_R1 4 LPSANQGSPFK 11 0 E5RFE4;Q56NI9;E5RFP7;E5RIE3 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 LPSANQGS(1)PFK;LPSANQGS(1)PFK;LPS(0.001)ANQGS(0.999)PFK;LPS(0.013)ANQGS(0.987)PFK ;;; 128.22 5.09E-05 1625750000 1265770 1352340 693070 694880 1150670 1507960 1834720 1581630 1138840 2003740 TRUE FALSE FALSE 1177046.059 1245175.653 961445.2651 1617715.757 1006342.239 1321923.227 1375653.65 1221527.376 1237555.568 1501990.462 0.783657479 0.829017018 0.640114095 1.077047956 0.670005745 0.880114262 0.915887075 0.813272392 0.823943693 1 20.51844422 -14 0.135434043 1.568044259 0.762703647 0.183161227 0.115094247 246.4737318 2.070418856 38.12239282 0.747540914 1.00E-14 14 -0.805340612 LPSFRWS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LPSFRWSPK 9 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LPSFRWS(1)PK;LPSFRWS(1)PK ; 96.745 0.0011951 421020000 504100 665770 485950 531910 1121810 969350 1521870 1759900 602470 890040 TRUE FALSE FALSE 616235.3059 743626.0101 665723.1271 560966.8964 1010118.657 1020103.667 1196710.042 1328281.766 723380.2028 668169.408 0.92227405 1.112930346 0.996338831 0.839557887 1.511770287 1.526714116 1.791027886 1.987941605 1.082629935 1 19.34985441 -5.781068243 14.43819941 1.550344781 0.98019315 0.428499249 0.285326983 1.675525748 1231.290361 0.086683402 0.099160538 1.66E-06 5.781068243 -0.570151631 LPSFRWS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LPSFRWSPK 9 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LPSFRWS(1)PK;LPSFRWS(1)PK ; 96.745 0.0011951 405930000 378000 478750 419310 421570 1070190 544890 1044990 1051160 378750 924600 TRUE FALSE FALSE 351504.152 440812.1064 581678.0615 981436.265 935956.7911 477667.0118 783522.4492 811833.8147 411580.355 693074.1419 0.507166738 0.636024459 0.839272491 1.416062447 1.350442521 0.689200452 1.130503076 1.171352047 0.593847512 1 19.40265017 -4.879649252 3.346326633 1.061650651 0.561698761 0.374217145 0.245190422 0.245758957 5.346301287 0.06777386 0.164386533 1.32E-05 4.879649252 -0.49995189 LPSGS(ph)GAAS(ph)PTGSAVDIR ddPTM_HeLa_A485_30min_R1 1 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 LPS(0.393)GS(0.607)GAAS(0.893)PT(0.103)GS(0.005)AVDIR 101.92 0.00053686 2330400000 302120 305250 311490 302510 486310 360130 482830 470740 361470 456320 TRUE FALSE FALSE 369325.5517 340946.3322 426723.1132 319035.3553 437891.2689 378985.8499 379669.4261 355290.2769 434013.7134 342567.8219 1.078109291 0.995266661 1.245660234 0.931305671 1.278261532 1.106308957 1.108304405 1.0371385 1.266942443 1 18.38603012 -4.681494005 24.81648747 1.120857355 1.036687938 0.085933203 0.110923111 71.83725483 22294.03172 0.026041677 0.06889979 2.08E-05 4.681494005 -0.084169418 LPSGS(ph)GAAS(ph)PTGSAVDIR ddPTM_HeLa_A486_30min_R1 3 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 LPS(0.019)GS(0.981)GAAS(0.898)PT(0.098)GS(0.003)AVDIR;LPS(0.438)GS(0.561)GAAS(0.934)PT(0.047)GS(0.02)AVDIR;LPS(0.058)GS(0.942)GAAS(0.916)PT(0.072)GS(0.012)AVDIR ;; 108.71 0.00024862 5309610000 418862 522788 488391 183395 620696 463804 516827 549657 489567 465858 TRUE FALSE FALSE 389501.9368 481360.3749 677509.0748 426952.8283 542842.5199 406584.5781 387511.4182 424512.1 532003.0617 349204.1246 1.115399016 1.378449855 1.940151983 1.222645434 1.554513483 1.1643178 1.109698858 1.215656031 1.523473019 1 18.41371107 -6.269516454 24.3883263 1.21029949 1.454151478 0.198651217 0.239773872 762.6874233 2302890.19 0.084564918 0.075910439 5.38E-07 6.269516454 0.243851988 LPSGSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A485_30min_R1 5 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LPSGSGAAS(0.995)PT(0.005)GSAVDIR;LPSGSGAAS(1)PTGSAVDIR;LPSGSGAAS(0.999)PT(0.001)GSAVDIR;LPSGSGAAS(0.799)PT(0.201)GSAVDIR;LPSGSGAAS(0.948)PT(0.051)GS(0.001)AVDIR ;;;; 358.1 1.22E-115 95246300000 7000460 6879120 8189140 6171600 9374240 7020390 7802650 7261290 7303840 9129880 TRUE FALSE FALSE 8557688.176 7683573.244 11218643.66 6508738.881 8440907.751 7387966.765 6135550.086 5480447.242 8769653.693 6853968.939 1.248574111 1.121039986 1.63680982 0.949630636 1.231535746 1.077910745 0.895182068 0.799601996 1.279500064 1 22.70850822 -5.917423889 1.244510206 0.986716172 1.288781356 0.266807177 0.195210462 0.583898639 1.899974437 0.082650022 0.101956193 1.21E-06 5.917423889 0.302065184 LPSGSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A486_30min_R1 6 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LPSGSGAAS(0.997)PT(0.003)GSAVDIR;LPSGSGAAS(1)PTGSAVDIR;LPSGSGAAS(0.997)PT(0.003)GSAVDIR;LPSGSGAAS(0.999)PT(0.001)GSAVDIR;LPSGSGAAS(0.948)PT(0.051)GS(0.001)AVDIR;LPSGSGAAS(0.956)PT(0.043)GS(0.002)AVDIR ;;;;; 396.46 7.55E-146 89812000000 5781090 7833390 7373290 2187849 9015760 7185480 8078780 8102060 6593490 6662100 TRUE FALSE FALSE 5375865.445 7212643.648 10228425.35 5093423.04 7884919.312 6299008.534 6057383.795 6257397.805 7165019.022 4993866.797 1.07649356 1.444300367 2.048197472 1.019935702 1.578920631 1.261348929 1.212964631 1.253016562 1.434763744 1 22.25172591 -6.377658662 7.836482746 1.245252999 1.44505541 0.11153556 0.282045543 0.700486466 43.09582935 0.099344155 0.087459784 4.19E-07 6.377658662 0.199802411 LPSNSLGFTATHNTS(ph)PAAPPTEVTICQSSEVSKPK ddPTM_HeLa_A486_30min_R1 1 LPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPK 35 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LPS(0.002)NS(0.001)LGFT(0.002)AT(0.002)HNT(0.154)S(0.839)PAAPPTEVTICQSSEVSKPK 82.311 0.00015017 330520000 66191 67686 36027 13622 70112 70596 79317 71420 54233 61172 TRUE FALSE FALSE 61551.35271 62322.31485 49977.61924 31712.70442 61317.89919 61886.58329 59471.04767 55159.22509 58933.96011 45854.13304 1.34232944 1.359142802 1.089926162 0.691599695 1.337238219 1.349640244 1.296961555 1.202928099 1.285248596 1 15.48476416 LPSPEPSMS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LPSPEPSMSPK 11 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 LPSPEPS(0.049)MS(0.951)PK;LPSPEPS(0.075)MS(0.925)PK ; 96.745 0.001852 352470000 189894 243550 223410 299030 302950 262680 326730 362440 209886 416100 TRUE FALSE FALSE 232135.2652 272031.0539 306058.6559 315365.2517 272787.2343 276433.5186 256921.4664 273551.0217 252008.195 312373.9278 0.743132651 0.870850701 0.979782974 1.0095761 0.873271455 0.884944274 0.822480507 0.875716561 0.806751693 1 18.25291452 -5.966388162 24.99569053 0.868116022 0.908969252 0.008917342 0.082263993 675.0051634 501970.1503 0.026450452 0.029991841 1.08E-06 5.966388162 0.040853231 LPSPEPSMS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LPSPEPSMSPK 11 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 LPSPEPS(0.038)MS(0.962)PK;LPSPEPS(0.157)MS(0.842)PK ; 110.64 0.00053897 367890000 216257 228696 189525 128843 269170 212267 313630 272330 205894 363750 TRUE FALSE FALSE 201098.5011 210573.2961 262914.1557 299953.0154 235408.1887 186079.6557 235156.4568 210326.4039 223741.0577 272664.6324 0.737530567 0.772279464 0.964240039 1.100080391 0.863361657 0.682448817 0.862438427 0.771373985 0.820572348 1 18.05676805 -6.005698517 24.99644536 0.810562419 0.901397042 0.053456625 0.119822632 632.0917023 2772675.11 0.039713607 0.043669931 9.87E-07 6.005698517 0.090834624 LPSPT(ph)SPFSSLSQDQAATSK ddPTM_HeLa_A485_30min_R1 1 LPSPTSPFSSLSQDQAATSK 20 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LPS(0.061)PT(0.561)S(0.377)PFSSLSQDQAATSK 188.71 1.70E-18 119300000 41440 38955 34775 64224 56571 39761 53471 46265 47314 86885 TRUE FALSE FALSE 50658.18503 43510.44839 47639.71961 67732.3945 50938.59261 41842.82448 42046.48403 34918.43621 56809.48581 65226.1685 0.776654312 0.667070432 0.730377404 1.038423627 0.780953316 0.641503639 0.644625999 0.535343973 0.870961565 1 15.99316326 -6.022560409 23.6086731 0.704429549 0.803400077 0.015575887 0.152016564 1020.355872 1067765.239 0.050117606 0.05055278 9.49E-07 6.022560409 0.098970528 LPSPT(ph)SPFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 2 LPSPTSPFSSLSQDQAATSK 20 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LPS(0.375)PT(0.575)S(0.05)PFSSLSQDQAATSK;LPS(0.389)PT(0.573)S(0.038)PFSSLSQDQAATSK ; 202.35 1.29E-25 406450000 358150 457510 273390 153101 388720 501550 488830 457010 409030 468160 TRUE FALSE FALSE 333045.5345 421255.2414 379253.9296 356426.8653 339963.1129 439673.8604 366519.5637 352958.7995 444485.0497 350929.6888 0.949037785 1.200397843 1.080712011 1.015664609 0.968749934 1.252883054 1.044424497 1.0057821 1.266592893 1 18.42082248 LPSPTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_A485_30min_R1 1 LPSPTSPFSSLSQDQAATSK 20 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LPS(0.236)PT(0.311)S(0.451)PFS(0.002)SLSQDQAATSK 140.28 5.03E-08 195640000 53776 40639 41560 76981 63405 44004 59173 47444 50901 92696 TRUE FALSE FALSE 65738.28567 45391.37754 56934.77346 81186.2771 57092.17557 46307.9814 46530.20515 35808.28461 61116.36381 69588.59314 0.944670422 0.652281868 0.818162444 1.166660705 0.82042434 0.665453623 0.668647016 0.514571182 0.878252614 1 16.08656322 -6.008088285 24.70263187 0.713881614 0.887678452 0.132358398 0.171557819 585.4230556 1787962.212 0.05509584 0.059718847 9.82E-07 6.008088285 0.173796837 LPSPTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_A486_30min_R1 1 LPSPTSPFSSLSQDQAATSK 20 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;H0YDG6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LPS(0.244)PT(0.297)S(0.442)PFS(0.008)S(0.008)LS(0.001)QDQAATSK 92.935 0.00049672 116850000 79833 88961 50398 26070 77757 91872 82730 84042 82369 96951 TRUE FALSE FALSE 74237.11896 81911.40637 69913.45531 60692.2775 68003.992 80537.76673 62030.07897 64907.47122 89508.81124 72673.83855 1.02151091 1.127109948 0.962016823 0.835132404 0.935742399 1.108208515 0.853540699 0.893133933 1.231651073 1 16.14914849 -9.721447848 10.1871632 1 0.988794848 0 0.121667023 0 0 0.118678702 0.028783813 1.90E-10 9.721447848 -0.011205152 LPSS(ph)PLGCR ddPTM_HeLa_A485_30min_R1 3 LPSSPLGCR 9 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 LPS(0.004)S(0.996)PLGCR;LPS(0.049)S(0.951)PLGCR;LPS(0.061)S(0.939)PLGCR ;; 163.66 1.13E-05 1215080000 633585 739003 832777 747383 945663 676955 850167 718083 750266 971040 TRUE FALSE FALSE 774523.7974 825422.9724 1140855.867 788210.6408 851509.4713 712399.317 668521.8752 541972.0183 900837.5044 728977.5987 1.062479559 1.132302246 1.565008128 1.081254955 1.168087295 0.977258174 0.91706779 0.743468687 1.235754715 1 19.47551496 -6.109055999 1.92496934 0.950421363 1.232474675 0.299764668 0.172788361 0.399021867 2.932410358 0.067034505 0.068281131 7.78E-07 6.109055999 0.282053311 LPSS(ph)PLGCR ddPTM_HeLa_A486_30min_R1 3 LPSSPLGCR 9 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 LPS(0.003)S(0.997)PLGCR;LPS(0.203)S(0.797)PLGCR;LPS(0.004)S(0.996)PLGCR ;; 160.33 1.39E-05 1131740000 846740 1064740 936240 301324 1143970 916120 993490 1008700 850410 916270 TRUE FALSE FALSE 787387.8986 980366.1247 1298777.201 701497.5001 1000482.616 803098.4288 744908.2939 779041.0298 924124.2235 686830.0281 1.146408669 1.427378077 1.890973237 1.021355316 1.456666969 1.169282641 1.084559882 1.134255926 1.345491877 1 19.38959359 -5.931463774 1.31607738 1.151854944 1.441934708 0.204969607 0.229729787 0.690174769 2.494155456 0.096561719 0.116334414 1.17E-06 5.931463774 0.290079765 LPSS(ph)PVYEDAASFK ddPTM_HeLa_A485_30min_R1 6 LPSSPVYEDAASFK 14 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 LPSS(1)PVYEDAASFK;LPS(0.019)S(0.981)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPS(0.011)S(0.989)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK ;;;;; 358.73 2.01E-95 30778200000 8784210 7327250 6322769 10503140 8024049 6472615 8465120 6331495 7053935 12703590 TRUE FALSE FALSE 10738227.21 8184108.149 8661824.365 11076899.94 7225146.507 6811511.113 6656477.958 4778685.924 8469595.052 9536818.805 1.125975803 0.858159132 0.908250911 1.161487931 0.757605513 0.714233043 0.697976767 0.501077563 0.888094366 1 23.18507668 -5.880061146 7.746712915 0.726599178 0.994181818 0.396286917 0.149689426 0.22389775 14.25388357 0.045164614 0.051322028 1.32E-06 5.880061146 0.267582639 LPSS(ph)PVYEDAASFK ddPTM_HeLa_A486_30min_R1 10 LPSSPVYEDAASFK 14 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 LPS(0.163)S(0.837)PVYEDAASFK;LPS(0.01)S(0.99)PVYEDAASFK;LPS(0.106)S(0.894)PVYEDAASFK;LPS(0.012)S(0.988)PVYEDAASFK;LPS(0.003)S(0.997)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPS(0.007)S(0.993)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPS(0.002)S(0.998)PVYEDAASFK ;;;;;;;;; 275.82 6.50E-49 33466825000 8274780 9142200 5387395 2804076 7254840 8640860 9230200 8490230 7329950 9065840 TRUE FALSE FALSE 7694760.653 8417738.777 7473538.623 6528030.638 6344870.319 7574838.547 6920706.333 6557189.969 7965315.968 6795694.655 1.132299352 1.238687022 1.09974609 0.960612707 0.933660301 1.114652575 1.018395717 0.964903561 1.172112105 1 22.6961896 -4.992913768 5.624919719 1.022121252 1.18356358 0.447216892 0.072231047 0.136457555 15.23931252 0.019049852 0.038283216 1.02E-05 4.992913768 0.161442328 LPSSPAS(ph)PSPK ddPTM_HeLa_A485_30min_R1 1 LPSSPASPSPK 11 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 LPSS(0.001)PAS(0.499)PS(0.499)PK 102.87 0.00099229 89798000 136270 129670 95299 191800 129140 134480 189960 176560 122210 287020 TRUE FALSE FALSE 166582.7914 144833.7785 130554.0658 202277.5483 116282.3682 141521.1649 149373.4942 133258.3832 146736.426 215471.1962 0.773109326 0.672172342 0.605900316 0.938768392 0.539665488 0.65679853 0.693241124 0.61845103 0.681002513 1 17.7171355 -9.708583006 13.16328638 1 0.684186012 0.456885675 0.102489998 0 0 0.095924262 0.023265051 1.96E-10 9.708583006 -0.315813988 LPSSPASPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LPSSPASPSPK 11 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 LPSSPAS(0.002)PS(0.998)PK;LPSSPAS(0.003)PS(0.997)PK ; 158.53 1.61E-07 270320000 417030 363080 265300 651060 361880 356280 521200 470530 305070 971760 TRUE FALSE FALSE 509796.8848 405539.0476 363445.5101 686625.7592 325849.9566 374934.2699 409841.3622 355131.7797 366294.7507 729518.1159 0.698813194 0.5558999 0.498199431 0.941204535 0.446664654 0.513947854 0.561797375 0.486803236 0.502105078 1 19.47658428 -10.28562761 5.125658728 1.000092177 0.577083022 0.458308835 0.137504487 0.000145006 2.02E-05 0.133289318 0.032320403 5.18E-11 10.28562761 -0.423009155 LPSSPASPS(ph)PK ddPTM_HeLa_A486_30min_R1 1 LPSSPASPSPK 11 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 LPSSPAS(0.039)PS(0.961)PK 139.46 8.55E-06 122410000 287280 302480 153850 153640 248950 336320 369170 324180 240320 587780 TRUE FALSE FALSE 267143.1555 278510.3832 213424.8402 357681.6845 217724.3696 294828.2579 276799.7613 250371.2908 261151.1311 440596.0622 0.606322159 0.632121817 0.484400244 0.811813167 0.494158683 0.669157723 0.628239299 0.568255852 0.592722345 1 18.74909708 -10.71627421 2.707026971 1.066445339 0.6102859 0.642460305 0.087350849 42721021.05 36131986.58 19270419.13 0.022027708 1.92E-11 10.71627421 -0.456159439 LPSTSDDCPAIGT(ph)PLR ddPTM_HeLa_A485_30min_R1 2 LPSTSDDCPAIGTPLR 16 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR ; 246.69 4.23E-41 345530000 110566 89858 126356 160448 135995 81659 95440 78602 131735 202829 TRUE FALSE FALSE 135161.0253 100366.1114 173100.3425 169212.868 122454.8603 85934.53897 75048.46433 59324.73626 158173.0062 152267.4631 0.88765533 0.659143519 1.136817669 1.111287103 0.804208974 0.564365737 0.492872626 0.389608752 1.038784012 1 17.21624817 -6.009522009 6.908892044 0.649650124 0.943980612 0.198114029 0.228735136 0.204191566 53.08961518 0.074573078 0.079442028 9.78E-07 6.009522009 0.294330488 LPSTSDDCPAIGT(ph)PLR ddPTM_HeLa_A486_30min_R1 2 LPSTSDDCPAIGTPLR 16 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR ; 268.42 1.29E-50 448860000 226680 338060 265010 83986 308240 300930 258200 277810 257580 263660 TRUE FALSE FALSE 210790.9026 311270.8944 367628.9692 195523.6524 269577.665 263804.3162 193595.629 214558.7275 279907.2418 197637.8199 1.066551446 1.574956122 1.860114473 0.989302819 1.363998374 1.334786613 0.979547483 1.085615737 1.416263557 1 17.59249952 -5.280312171 24.99024743 1.178020506 1.507982294 0.295438574 0.235478846 1010.538175 1338093.271 0.066891699 0.099409685 5.24E-06 5.280312171 0.329961788 LPT(ph)S(ph)AS(ph)WWPSGK ddPTM_HeLa_A486_30min_R1 2 LPTSASWWPSGK 12 0 Q96CN9 Q96CN9 GCC1 GRIP and coiled-coil domain-containing protein 1 3 0 LPT(0.999)S(0.999)AS(0.721)WWPS(0.282)GK;LPT(1)S(1)AS(0.705)WWPS(0.295)GK ; 77.64 0.0018005 0 511850 594140 365770 84471 564310 520720 500370 569590 491360 362350 TRUE FALSE FALSE 475971.9582 547058.1826 507405.9397 196652.7569 493528.9778 456478.8607 375172.1336 439906.7911 533951.4804 271615.2015 1.752375992 2.014092656 1.868105823 0.724012337 1.817015304 1.680608663 1.381263389 1.619595621 1.965837985 1 18.0512047 -11.00938237 2.658953041 0.327950288 1.634512268 0.230769356 0.353711136 25480077.28 7200690.583 104751808.7 0.092246982 9.79E-12 11.00938237 1.30656198 LPVDLAEELGHR ddPTM_HeLa_A485_30min_R1 2 LPVDLAEELGHR 12 0 K7ES20;K7ENC6;J3QRG6;P42771-2;P42771;P42771-4 K7ES20 CDKN2A Cyclin-dependent kinase inhibitor 2A 0 0 ; ; 106.01 0.001909 60364000 43757.1 49630.3 52265 45469.6 63331 51599.3 59380 46059 53740.5 67166 FALSE FALSE TRUE 53490.71593 55434.13186 71599.99843 47953.48911 57025.54327 54300.95956 46692.97791 34762.95803 64525.72541 50422.7523 1.060844827 1.099387267 1.419993855 0.95102879 1.130948643 1.076913835 0.926029933 0.689429998 1.279694631 1 15.62178725 -6.61152487 3.819369803 0.948703625 1.134463881 0.149916299 0.173806272 0.384837835 10.84386237 0.068652622 0.052170208 2.45E-07 6.61152487 0.185760256 LPVDLAEELGHR ddPTM_HeLa_A486_30min_R1 2 LPVDLAEELGHR 12 0 K7ES20;K7ENC6;J3QRG6;P42771-2;P42771;P42771-4 K7ES20 CDKN2A Cyclin-dependent kinase inhibitor 2A 0 0 ; ; 156.69 2.11E-05 57187000 60779 75768 61676 28069.1 109209 68764 74117 75233 70828 63926 FALSE FALSE TRUE 56518.70596 69763.86774 85558.59894 65346.28333 95510.98889 60280.59682 55572.14267 58104.08822 76967.42807 47918.51351 1.17947536 1.455885474 1.785501942 1.363695961 1.993195988 1.257981361 1.159721757 1.212560323 1.606214852 1 15.54829553 -6.445254655 24.99999528 1.254675841 1.559476681 0.272941058 0.251374535 161.9479262 52156.81596 0.087107242 0.07682134 3.59E-07 6.445254655 0.30480084 LPVDSVFNKFEDEDS(ph)DDVPR ddPTM_HeLa_A486_30min_R1 1 LPVDSVFNKFEDEDSDDVPR 20 1 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LPVDSVFNKFEDEDS(1)DDVPR 67.832 0.0026886 93917000 41164 58392 42039 31499 62632 70629 78195 76251 50084 63953 TRUE FALSE FALSE 38278.61617 53764.80526 58317.62664 73331.26387 54776.11054 61915.51208 58629.78394 58890.31185 54425.32145 47938.75254 0.798490035 1.121531171 1.216502799 1.529686527 1.142626949 1.291554511 1.223014385 1.228448984 1.135309506 1 15.54890475 -4.294128322 2.373884017 1.238907281 0.713599584 0.489511475 0.128556513 0.407325536 2.941601361 0.03289496 0.427688204 5.08E-05 4.294128322 -0.525307697 LPVGSQCSVDLES(ph)ASGEKDLAPPSEPSESFQEHTVDGENQIVFTHR ddPTM_HeLa_A486_30min_R1 1 LPVGSQCSVDLESASGEKDLAPPSEPSESFQEHTVDGENQIVFTHR 46 1 F5H7V9;E9PC84;J3QSU6;P24821-6;P24821-5;P24821-2;P24821-3;P24821-4;P24821 F5H7V9 TNC Tenascin 1 0 LPVGSQCS(0.001)VDLES(0.499)AS(0.499)GEKDLAPPSEPSESFQEHTVDGENQIVFTHR 111.36 1.38E-07 286670000 46212 44182 26948 13740 62367 45911 68106 71403 55279 81218 TRUE FALSE FALSE 42972.77744 40680.85741 37382.98729 31987.41438 54544.34931 40246.96761 51065.15845 55146.09562 60070.62823 60880.48416 0.705854726 0.668208507 0.614038929 0.525413272 0.895925025 0.661081596 0.838777141 0.905809084 0.98669761 1 15.89369221 -7.011271145 0.796782971 1.013992143 0.647069629 0.697042476 0.086738749 0.362921102 0.431544474 0.075864162 0.038783476 9.74E-08 7.011271145 -0.366922514 LPYQYLHYALFK ddPTM_HeLa_A485_30min_R1 1 LPYQYLHYALFK 12 0 K7ERA3;Q92791 K7ERA3 P3H4;LEPREL4 Synaptonemal complex protein SC65 0 0 121.08 0.00046435 11050000 29065 35484 39871 35187 51112 41408 49905 46888 36000 50391 FALSE FALSE TRUE 35530.40898 39633.54513 54620.94207 37109.17671 46023.10981 43576.05885 39242.38906 35388.64448 43224.86979 37829.45108 0.939226131 1.047690199 1.443873504 0.980959957 1.216594703 1.151908305 1.037350211 0.935478667 1.142624822 1 15.20722222 -6.806953846 6.10794208 1.022053153 1.137739131 0.110182885 0.139600382 0.420947776 37.17813803 0.058662865 0.039890499 1.56E-07 6.806953846 0.115685978 LPYQYLHYALFK ddPTM_HeLa_A486_30min_R1 2 LPYQYLHYALFK 12 0 K7ERA3;Q92791 K7ERA3 P3H4;LEPREL4 Synaptonemal complex protein SC65 0 0 ; ; 122.42 0.00044123 33345000 68257 71179 61301 25026.3 85372 71629 86752 77728 66205 85140 FALSE FALSE TRUE 63472.53678 65538.51681 85038.3889 58262.49116 74663.8477 62792.14225 65045.73203 60031.03119 71943.70271 63820.38983 0.9945495 1.026921286 1.332464266 0.912913433 1.169905854 0.983888416 1.019199855 0.94062464 1.127283975 1 15.9617298 -6.292959736 24.67695107 1.010800943 1.087920149 0.093585955 0.113575648 1430.503212 1119920.634 0.038901738 0.034311376 5.09E-07 6.292959736 0.077119205 LQAALDDEEAGGRPAMEPGNGS(ph)LDLGGDSAGR ddPTM_HeLa_A485_30min_R1 13 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(0.999)LDLGGDS(0.001)AGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR ;;;;;;;;;;;; 279.33 5.21E-78 26233390000 1900642 2706376 2936595 1979726 2997709 2907438 3295517 3483495 2417363 2970588 TRUE FALSE FALSE 2323433.256 3022863.131 4022963.692 2087873.418 2699246.566 3059666.958 2591402.871 2629162.389 2902505.581 2230075.081 1.041863243 1.355498367 1.803958856 0.936234585 1.210383717 1.37200177 1.162024944 1.178956893 1.301528189 1 21.08866085 -13.33978204 0.157702222 0.195603457 1.349032574 0.111924867 0.221463447 235.1041238 2.596410291 60.13454527 1.028306518 4.57E-14 13.33978204 1.153429117 LQAALDDEEAGGRPAMEPGNGS(ph)LDLGGDSAGR ddPTM_HeLa_A486_30min_R1 15 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR ;;;;;;;;;;;;;; 318 9.19E-110 30317270000 8683043 9204368 8497156 2872116 11145502 7756770 9220070 9760860 8735690 10212641 TRUE FALSE FALSE 8074406.525 8474980.358 11787482.36 6686431.197 9747529.211 6799818.582 6913110.966 7538525.256 9492906.643 7655329.22 1.054743211 1.107069352 1.539774715 0.873434833 1.273299806 0.888246395 0.903045547 0.984742137 1.240038981 1 22.86803299 -5.305490628 24.99999239 1.022406575 1.221184482 0.230745349 0.175754217 684.766096 388617.4017 0.049369947 0.073227822 4.95E-06 5.305490628 0.198777907 LQAALDDEEAGGRPAMEPGNGSLDLGGDS(ph)AGR ddPTM_HeLa_A485_30min_R1 1 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 LQAALDDEEAGGRPAMEPGNGS(0.194)LDLGGDS(0.806)AGR 88.161 0.00035245 146900000 44032 61104 59561 46656 65403 54921 54266 81403 54551 68577 TRUE FALSE FALSE 53826.76649 68249.58127 81595.09244 49204.69914 58891.24768 57796.57864 42671.62579 61438.78662 65498.88533 51482.01597 1.045545041 1.325697527 1.58492419 0.955764809 1.143918834 1.122655699 0.828864701 1.19340289 1.272267298 1 15.65178093 -5.285289914 24.99977219 1.07664437 1.31941987 0.305642119 0.169104767 956.6231133 1002716.045 0.048684779 0.072255604 5.18E-06 5.285289914 0.2427755 LQADPKPIS(ph)PQQK ddPTM_HeLa_A485_30min_R1 2 LQADPKPISPQQK 13 1 H7C1N2;J3KR05;O75128-2;O75128-6;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 LQADPKPIS(1)PQQK;LQADPKPIS(1)PQQK ; 139.08 2.20E-06 1331890000 1319090 1015220 645730 2216580 1460010 1444710 2312870 2436940 1078750 2974010 TRUE FALSE FALSE 1612517.02 1133941.148 884612.3981 2337666.153 1314646.278 1520352.782 1818706.43 1839276.644 1295245.23 2232644.04 0.722245459 0.507891597 0.396217392 1.047039345 0.588829323 0.680965149 0.814597579 0.823810966 0.580139604 1 21.09032182 -13.99999997 0.072836737 2.008476246 0.338582089 0.240097535 0.172824465 423.7583342 2.207713084 71.64069872 8.20476635 1.00E-14 13.99999997 -1.669894157 LQADPKPIS(ph)PQQK ddPTM_HeLa_A486_30min_R1 3 LQADPKPISPQQK 13 1 H7C1N2;J3KR05;O75128-2;O75128-6;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 LQADPKPIS(1)PQQK;LQADPKPIS(1)PQQK;LQADPKPIS(1)PQQK ;; 158.45 4.52E-09 1595320000 3154000 2829400 1062070 1813980 2438520 3557460 4444170 4077870 2024090 5276300 TRUE FALSE FALSE 2932920.887 2605188.04 1473331.947 4223037.113 2132658.083 3118576.755 3332191.66 3149428.02 2199539.751 3955080.137 0.741557892 0.658694122 0.372516332 1.067750075 0.539219942 0.788499006 0.842509265 0.79629942 0.556130262 1 21.9152755 -14 0.177792471 2.114721263 0.651769058 0.176997735 0.182950492 234.3786667 2.246235545 93.05666567 0.576122154 1.00E-14 14 -1.462952205 LQAITASSANLRHS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LQAITASSANLRHSPR 16 1 I3VM54;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 LQAITAS(0.004)S(0.203)ANLRHS(0.793)PR;LQAITAS(0.001)S(0.11)ANLRHS(0.889)PR ; 130 9.67E-06 807880000 233130 356710 326210 183497 403130 341130 360630 429580 256699 260560 TRUE FALSE FALSE 284988.9642 398424.1315 446888.6537 193520.9765 362992.9617 358991.0393 283578.4544 324224.8314 308216.1347 195607.1873 1.45694526 2.036858344 2.284622871 0.989334693 1.85572405 1.835265076 1.449734329 1.657530257 1.575689212 1 17.57759986 -11.39903264 0.196161587 6.95E-10 1.859128187 0.292115164 0.332112772 54.50936621 1.352305742 24.84747947 0.944663913 3.99E-12 11.39903264 1.859128186 LQAITASSANLRHS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LQAITASSANLRHSPR 16 1 I3VM54;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 LQAITASS(0.09)ANLRHS(0.91)PR 165.33 3.51E-12 362450000 239730 240080 216800 51222 305460 193080 238770 238340 174960 214150 TRUE FALSE FALSE 222926.165 221055.1864 300750.7661 119247.4046 267146.3585 169259.7527 179027.2205 184075.1849 190125.6737 160525.4461 1.388727896 1.377072556 1.873539513 0.742856709 1.664199446 1.054410729 1.11525758 1.146704086 1.184395859 1 17.29244248 -5.75098423 0.762805221 1.103634285 1.495498736 0.208671213 0.279416272 1.190642553 1.495210745 0.154899292 0.273819951 1.77E-06 5.75098423 0.391864451 LQAKES(ph)PQR ddPTM_HeLa_A485_30min_R1 7 LQAKESPQR 9 1 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR ;;;;;; 107.39 0.00051756 25220800000 7440130 8330780 7594290 10002300 13052770 10772730 16534890 19234270 8925850 14633800 TRUE FALSE FALSE 9095161.25 9304992.253 10403733.9 10548700.32 11753190.39 11336773.48 13002075.67 14517035.12 10717186.22 10985862.98 0.827896841 0.846996934 0.947011074 0.960206799 1.069846804 1.031942007 1.183527931 1.321428745 0.975543409 1 23.38914487 -5.471630283 0.879013601 1.135834025 0.82101111 0.539881444 0.095499692 0.495305987 0.762187259 0.043863943 0.105355644 3.38E-06 5.471630283 -0.314822915 LQAKES(ph)PQR ddPTM_HeLa_A486_30min_R1 7 LQAKESPQR 9 1 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR;LQAKES(1)PQR ;;;;;; 117.95 0.00027207 15954330000 6452450 6679620 4740170 3734680 8458000 7405570 10205370 10149850 5357200 8600450 TRUE FALSE FALSE 6000166.575 6150302.584 6575690.77 8694523.78 7397118.772 6491946.068 7651878.485 7838950.725 5821566.409 6446841.34 0.930714168 0.954002473 1.019986443 1.348648636 1.147402019 1.006996407 1.186919001 1.21593666 0.903010653 1 22.62016105 -5.009135108 23.49472237 1.128947279 0.953517207 0.252196705 0.119416969 249.9265907 642804.0992 0.031600462 0.060607015 9.79E-06 5.009135108 -0.175430072 LQAKES(ph)PQRK ddPTM_HeLa_A485_30min_R1 5 LQAKESPQRK 10 2 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 LQAKES(1)PQRK;LQAKES(1)PQRK;LQAKES(1)PQRK;LQAKES(1)PQRK;LQAKES(1)PQRK ;;;; 104.24 0.00046564 9054070000 5914790 5449650 3607098 7890900 8029150 7599350 12277210 14378630 5300530 10610190 TRUE FALSE FALSE 7230514.63 6086939.162 4941513.654 8321959.886 7229739.634 7997240.215 9654083.788 10852248.45 6364297.752 7965264.899 0.907755702 0.764185402 0.620382839 1.044781309 0.907658405 1.004014344 1.212022941 1.362446646 0.799006415 1 22.92529091 -5.828308192 1.259231678 1.109455304 0.777569858 0.343889833 0.166243935 0.459994347 1.535823089 0.068954813 0.092628059 1.48E-06 5.828308192 -0.331885446 LQAKES(ph)PQRK ddPTM_HeLa_A486_30min_R1 4 LQAKESPQRK 10 2 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 LQAKES(1)PQRK;LQAKES(1)PQRK;LQAKES(1)PQRK;LQAKES(1)PQRK ;;; 120.59 0.00010786 7789520000 5030810 3556500 2313730 2996150 4566840 5340280 7560000 6875700 3316430 6974100 TRUE FALSE FALSE 4678176.198 3274669.987 3209668.22 6975188.617 3994024.343 4681450.55 5668408.038 5310253.205 3603900.823 5227739.966 0.894875458 0.626402615 0.613968606 1.334264646 0.764005932 0.8955018 1.084294184 1.015783731 0.689380276 1 22.31775595 LQALKDTANR ddPTM_HeLa_A485_30min_R1 1 LQALKDTANR 10 1 P29401;P29401-2;E9PFF2;F8W888;F8WAX4 P29401 TKT Transketolase 0 0 78.83 0.029138 38919000 46540 73499 69221 52546 90008 88439 92784 138210 65207 62253 FALSE FALSE TRUE 56892.66244 82094.06869 94828.72843 55416.45493 81046.48748 93069.52929 72959.94042 104313.7808 78293.44679 46734.47278 1.217359672 1.756606287 2.029095928 1.185772549 1.734190687 1.991453498 1.561158949 2.232052157 1.675282551 1 15.5121995 -5.975583354 24.98558095 1.772150065 1.579510594 0.014136292 0.378073143 749.4156885 766874.2337 0.112966543 0.128087149 1.06E-06 5.975583354 -0.192639471 LQALVNSLCAGQS(ph)P ddPTM_HeLa_A485_30min_R1 2 LQALVNSLCAGQSP 14 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 1 0 LQALVNSLCAGQS(1)P;LQALVNSLCAGQS(1)P ; 199.8 8.87E-22 343970000 152970 188170 215034 163337 219372 195637 231759 236902 163468 213085 TRUE FALSE FALSE 186997.6488 210174.8446 294584.0249 172259.6867 197530.5534 205880.2508 182241.7964 178801.4131 196274.5282 159966.831 1.168977641 1.313865151 1.841531916 1.076846279 1.234821945 1.287018374 1.1392474 1.117740546 1.226970159 1 17.28741327 LQALVNSLCAGQS(ph)P ddPTM_HeLa_A486_30min_R1 2 LQALVNSLCAGQSP 14 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 1 0 LQALVNSLCAGQS(1)P;LQALVNSLCAGQS(1)P ; 166.59 5.58E-12 198714000 221195 264836 216900 84001 290560 241061 250315 262710 227100 279270 TRUE FALSE FALSE 205690.3728 243849.4308 300889.4888 195558.5732 254115.2554 211321.3447 187683.5394 202896.6679 246785.2109 209338.9743 0.982570845 1.164854427 1.437331437 0.934171832 1.213893669 1.009469668 0.896553258 0.969225481 1.178878476 1 17.67548141 -6.28430901 19.05999709 1.001759364 1.151934471 0.181572767 0.143220951 66.62637502 55525.53226 0.050757408 0.044864653 5.20E-07 6.28430901 0.150175108 LQAQVR ddPTM_HeLa_A485_30min_R1 1 LQAQVR 6 0 P20290;P20290-2;D6RDG3;E9PPC3;E9PL10;Q96K17-3;Q96K17 P20290 BTF3;BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 0 0 126.25 0.018015 62164000 38338 55140 55035 40001 64430 48130 61088 69702 53136 54932 FALSE FALSE TRUE 46866.15584 61588.14335 75394.7367 42186.15334 58015.12297 50650.01238 48036.04976 52607.47521 63799.90781 41238.46335 1.136467075 1.493463586 1.828262515 1.02298073 1.406820678 1.228222593 1.164836074 1.275689513 1.547097118 1 15.33170295 -5.279710673 24.99263526 1.250521228 1.486804393 0.215741907 0.217892013 1284.220743 1756635.632 0.060809387 0.090386171 5.25E-06 5.279710673 0.236283165 LQAVEVVITHLAPGTK ddPTM_HeLa_A486_30min_R1 2 LQAVEVVITHLAPGTK 16 0 Q9Y2V2 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 0 0 ; ; 104.45 0.00095207 18830100 33263.6 35060 28757.5 16354.5 93760.2 34178.3 38533.5 41763.9 28998.1 42867.9 FALSE FALSE TRUE 30931.99341 32281.71791 39893.17415 38074.10251 81999.92144 29961.72885 28892.01073 32255.17167 31511.67866 32133.49882 0.962608946 1.004612604 1.241482429 1.184872607 2.551851633 0.932414146 0.899124334 1.00378648 0.98064885 1 14.97179046 LQAYLEEHAEEEANEEDVLGDET(ph)EEEETKPIELPVK ddPTM_HeLa_A486_30min_R1 1 LQAYLEEHAEEEANEEDVLGDETEEEETKPIELPVK 36 1 H0YHG0;F8VZQ9;P82979 H0YHG0 SARNP SAP domain-containing ribonucleoprotein 1 0 LQAYLEEHAEEEANEEDVLGDET(0.671)EEEET(0.329)KPIELPVK 126.52 3.38E-06 15985000 13423 11362 7131.3 6116.8 12067 14994 13511 13960 9671.1 16113 TRUE FALSE FALSE 12482.11702 10461.63374 9892.730343 14240.21953 10553.44434 13144.19273 10130.4049 10781.61274 10509.39873 12078.19992 1.033441829 0.866158352 0.819056681 1.179001806 0.8737597 1.088257589 0.838734659 0.892650628 0.870112997 1 13.56011784 -9.290433913 5.863402894 0.999999993 0.939445358 0.02424011 0.113879806 23403074.32 101650421.6 0.107369748 0.027722749 5.12E-10 9.290433913 -0.060554636 LQDAEIAR ddPTM_HeLa_A485_30min_R1 2 LQDAEIAR 8 0 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 0 ; ; 113.66 0.003434 236050000 876960 1065710 1176280 1012830 1431970 1116040 1425590 1486020 1174170 1681540 FALSE FALSE TRUE 1072036.727 1190335.514 1611434.921 1068158.338 1289398.039 1174474.129 1121001.051 1121571.265 1409815.149 1262363.024 0.849230139 0.942942316 1.276522593 0.846157815 1.021416196 0.930377479 0.88801797 0.888469674 1.116806435 1 20.26769542 LQDAEIAR ddPTM_HeLa_A486_30min_R1 2 LQDAEIAR 8 0 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 0 ; ; 144.12 0.015614 635580000 769380 889450 793220 406810 2161190 808030 928770 1010660 836380 957560 FALSE FALSE TRUE 715450.4351 818966.7427 1100376.027 947074.239 1890113.398 708343.474 696381.9225 780554.7806 908878.0918 717780.7433 0.996753454 1.140970624 1.533025283 1.319447823 2.63327404 0.986852156 0.970187524 1.087455728 1.266233596 1 19.45318369 LQDEIQNMKEEMAR ddPTM_HeLa_A486_30min_R1 1 LQDEIQNMKEEMAR 14 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 50.088 0.036587 36473000 29944 27659 31465 12018 50210 29818 38534 39292 19758 30771 FALSE FALSE TRUE 27845.08023 25467.20011 43649.09066 27978.51136 43912.19361 26139.35833 28892.38563 30346.06934 21470.63935 23065.74131 1.207205086 1.104113662 1.892377534 1.212989905 1.903784188 1.133254638 1.252610321 1.315633819 0.930845406 1 14.49346404 -7.379594533 1.052599592 0.97420306 1.433035437 0.261534439 0.275306402 0.730748542 1.441177924 0.245965138 0.092864698 4.17E-08 7.379594533 0.458832376 LQDFK(ac)SFLLK ddPTM_HeLa_A486_30min_R1 1 LQDFKSFLLK 10 1 P34897-3;P34897-2;P34897 P34897-3 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" 0 1 LQDFK(1)SFLLK 135.66 0.00031115 0 8533.7 8912.4 8350.1 3014.7 11002 9365 9052.6 9097.7 7491.5 7912.9 FALSE TRUE FALSE 7935.531698 8206.148966 11583.48234 7018.373955 9622.02657 8209.641516 6787.543731 7026.352311 8140.869252 5931.458336 1.337871945 1.383496014 1.952889439 1.183245933 1.622202505 1.384084832 1.144329665 1.184591025 1.372490337 1 12.53417114 -6.593627057 4.331767966 1.192614837 1.498705979 0.344059253 0.208075196 0.259976489 9.53720204 0.080330014 0.061714962 2.55E-07 6.593627057 0.306091142 LQDSSDPDTGSEEEGSSRLS(ph)PPHS(ph)PR ddPTM_HeLa_A485_30min_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 2 0 LQDSSDPDTGSEEEGS(0.012)S(0.014)RLS(0.974)PPHS(1)PR 140.24 7.68E-07 442560000 151790 195320 188600 162380 216080 207810 196120 224250 148940 192280 TRUE FALSE FALSE 185555.1618 218160.9749 258370.9883 171250.4082 194566.3165 218690.6103 154217.3598 169252.3359 178830.8918 144348.1347 1.285469759 1.511352921 1.789915671 1.186370774 1.347896299 1.515022073 1.068370992 1.172528736 1.23888606 1 17.13919294 -6.826851229 0.55819898 1.044206885 1.501705056 0.416213796 0.172317463 0.863411397 0.560561394 0.166051154 0.126998852 1.49E-07 6.826851229 0.457498171 LQEAPSSS(ph)PDSWNNPVMMTLTK ddPTM_HeLa_A485_30min_R1 1 LQEAPSSSPDSWNNPVMMTLTK 22 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 LQEAPS(0.03)S(0.155)S(0.809)PDS(0.006)WNNPVMMTLTK 173.43 2.22E-14 48654000 42387 38788 30747 40710 57193 42192 46497 61430 31836 56221 TRUE FALSE FALSE 51815.84192 43323.91919 42121.59479 42933.88422 51498.6641 44401.10788 36562.5361 46364.19618 38225.19318 42206.13937 1.227684946 1.02648382 0.997996865 1.01724263 1.220169977 1.052005906 0.866284779 1.098517819 0.905678504 1 15.36516525 -6.535975357 24.85522894 0.973446529 1.089131702 0.302242169 0.092838809 309.8212886 587984.3241 0.035238458 0.027310851 2.91E-07 6.535975357 0.115685173 LQEDPNYS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 LQEDPNYSPQR 11 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710;P46379-4;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 LQEDPNYS(1)PQR 96.464 0.0018913 316280000 342480 469500 400950 119870 477840 410280 404330 393040 392440 344000 TRUE FALSE FALSE 318473.9206 432295.1101 556208.5778 279063.4179 417904.8515 359663.825 303162.3574 303553.372 426457.0152 257860.1609 1.235064461 1.67647111 2.157016329 1.082227735 1.620664666 1.394801833 1.175685132 1.177201515 1.653830563 1 17.97622937 -5.940762088 1.155557628 1.276796839 1.631936096 0.167554813 0.309109501 0.857191045 2.422992656 0.140016203 0.17137906 1.15E-06 5.940762088 0.355139257 LQEDPNYS(ph)PQRFPNAQR ddPTM_HeLa_A485_30min_R1 5 LQEDPNYSPQRFPNAQR 17 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710;P46379-4;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR ;;;; 206.85 1.39E-25 9304250000 4217570 5613670 5692390 4462230 7005240 5534760 6444900 7043010 5105450 5862320 TRUE FALSE FALSE 5155753.896 6270139.874 7798241.941 4705990.326 6307773.709 5824551.475 5067894.465 5315700.754 6130066.985 4400951.512 1.171508907 1.424723689 1.771944526 1.069312014 1.433274984 1.323475494 1.151545172 1.207852606 1.392895825 1 22.06938405 -10.11463679 0.175487697 0.692833389 1.460798552 0.226422208 0.187652299 35.03030305 1.265612069 5.882222664 0.823295455 7.68E-11 10.11463679 0.767965162 LQEDPNYS(ph)PQRFPNAQR ddPTM_HeLa_A486_30min_R1 5 LQEDPNYSPQRFPNAQR 17 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710;P46379-4;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 LQEDPNYS(1)PQRFPNAQR;LQEDPNY(0.005)S(0.995)PQRFPNAQR;LQEDPNY(0.002)S(0.998)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR;LQEDPNYS(1)PQRFPNAQR ;;;; 210.29 8.31E-26 6945590000 4951442 5750040 5067560 1999152 6616010 5319194 5862450 6376090 4685189 5533346 TRUE FALSE FALSE 4604371.485 5294385.889 7029854.946 4654126.888 5786168.334 4662965.926 4395603.003 4924393.496 5091304.955 4147760.146 1.110086245 1.276444564 1.694855705 1.122081973 1.39501035 1.124213012 1.059753421 1.187241625 1.227482973 1 21.98390104 -6.273668789 23.76582477 1.12769173 1.327156593 0.271963516 0.163092305 567.5627629 1102959.43 0.057614286 0.051230322 5.33E-07 6.273668789 0.199464864 LQEEMLQR ddPTM_HeLa_A485_30min_R1 3 LQEEMLQR 8 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ;; ;; 132.76 0.0021584 85673000 117853 148361 165892 136600 206178 147398 187504 180659 147998 200954 FALSE FALSE TRUE 144068.9933 165710.5284 227262.3541 144062.1121 185650.1944 155115.5314 147442.2386 136352.097 177699.8411 150859.8661 0.954985557 1.098440113 1.506446745 0.954939944 1.230613544 1.028209393 0.977345682 0.903832812 1.177913289 1 17.20284952 -6.388447019 6.221666192 1.006397258 1.154950714 0.144823162 0.159177881 0.454269116 21.11476838 0.056558027 0.049657616 4.09E-07 6.388447019 0.148553457 LQEEMLQR ddPTM_HeLa_A486_30min_R1 1 LQEEMLQR 8 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 75.109 0.0030168 0 78166 90176 72783 50105 98451 80188 84576 96963 75605 94479 FALSE FALSE TRUE 72686.96705 83030.12534 100966.5268 116646.9722 86102.35756 70295.21985 63414.19025 74886.64159 82158.50227 70820.84344 1.026349921 1.172396731 1.425661174 1.647071208 1.21577707 0.992578123 0.895417043 1.057409626 1.160089294 1 16.11188641 -6.115071424 4.597465817 1.018813641 1.326961524 0.424600196 0.163237503 0.241638788 8.085877517 0.060401274 0.060890466 7.67E-07 6.115071424 0.308147884 LQEEQDGGS(ph)S(ph)DEDRAGPAPPGASDGVDIQDVK ddPTM_HeLa_A485_30min_R1 1 LQEEQDGGSSDEDRAGPAPPGASDGVDIQDVK 32 1 Q14147;H7C504 Q14147 DHX34 Probable ATP-dependent RNA helicase DHX34 2 0 LQEEQDGGS(1)S(1)DEDRAGPAPPGASDGVDIQDVK 90.036 0.0002721 116650000 76790 69098 65821 115040 132120 109640 161130 191350 100380 152600 TRUE FALSE FALSE 93871.67058 77178.41003 90170.92694 121324.3439 118965.6689 115380.5809 126703.2592 144421.1125 120525.3453 114559.6284 0.81941319 0.673696407 0.787109108 1.059049733 1.038460674 1.007166159 1.106002708 1.260663241 1.052075211 1 16.80573919 -5.248487369 3.506081421 1.085958335 0.741759888 0.780486631 0.076623631 0.106328393 2.815592327 0.023024636 0.03982578 5.64E-06 5.248487369 -0.344198447 LQEES(ph)DLELAK ddPTM_HeLa_A485_30min_R1 4 LQEESDLELAK 11 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 LQEES(1)DLELAK;LQEES(1)DLELAK;LQEES(1)DLELAK;LQEES(1)DLELAK ;;; 170.11 3.56E-08 195326000 329837 287447 223067 430806 409666 306219 439257 411030 245700 537353 TRUE FALSE FALSE 403208.1027 321061.4262 305588.7659 454339.8409 368878.2146 322252.1533 345406.1536 310224.248 295009.7363 403400.7863 0.999522352 0.795886962 0.757531409 1.126274059 0.914421159 0.798838684 0.856235697 0.769022418 0.731306795 1 18.62185437 -6.253734792 23.03905036 0.81821681 0.914477805 0.118814499 0.116458451 434.7443047 1300016.45 0.03959549 0.038786084 5.58E-07 6.253734792 0.096260995 LQEES(ph)DLELAK ddPTM_HeLa_A486_30min_R1 3 LQEESDLELAK 11 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 LQEES(1)DLELAK;LQEES(1)DLELAK;LQEES(1)DLELAK ;; 212.24 2.55E-15 201063000 568110 631170 317312 268349 577210 660990 810520 731060 440330 759810 TRUE FALSE FALSE 528288.4227 581153.7905 440183.7043 624730.0336 504810.9395 579443.7743 607719.3232 564613.5969 478498.1589 569548.6305 0.927556304 1.020376065 0.772864126 1.096886201 0.886335095 1.017373659 1.067019199 0.991335185 0.840135738 1 19.11945951 -5.280915425 24.99901439 0.985804918 0.918276506 0.131931026 0.091067253 1858.683146 2385759.079 0.02517211 0.037397606 5.24E-06 5.280915425 -0.067528412 LQEGYDHSYYFIATFITDHIR ddPTM_HeLa_A485_30min_R1 2 LQEGYDHSYYFIATFITDHIR 21 0 X6RA14;P10768 X6RA14 ESD S-formylglutathione hydrolase 0 0 ; ; 219.78 5.13E-35 64081000 27250 26133 30235 22145 33688 30372 40629 44458 21945 31969 FALSE FALSE TRUE 33311.66849 29189.02702 41420.18468 23354.72528 30333.90443 31962.23096 31948.28224 33554.60579 26349.16021 23999.71665 1.388002574 1.216223819 1.725861405 0.973125042 1.263927607 1.331775347 1.331194143 1.398125082 1.097894638 1 14.55072975 -7.907505091 4.594090097 1.003206165 1.323590251 0.293170958 0.176198228 0.240959338 8.218247738 0.164256229 0.043039919 1.24E-08 7.907505091 0.320384086 LQEGYDHSYYFIATFITDHIR ddPTM_HeLa_A486_30min_R1 2 LQEGYDHSYYFIATFITDHIR 21 0 X6RA14;P10768 X6RA14 ESD S-formylglutathione hydrolase 0 0 ; ; 239.57 4.63E-43 59265000 24702.3 31934.6 34459.3 16515.9 45733 33808.1 48576.1 40119.1 34879.3 32478 FALSE FALSE TRUE 22970.79633 29403.98599 47802.86381 38449.84987 39996.7407 29637.20036 36421.84599 30984.85672 37902.66581 24345.2974 0.943541414 1.207789147 1.963535833 1.579354289 1.642893904 1.217368589 1.496052621 1.272724511 1.556878324 1 14.5713555 -6.270178715 24.5092801 1.337365592 1.48677906 0.063671096 0.289645005 1744.477571 4892334.807 0.106193728 0.095138559 5.37E-07 6.270178715 0.149413468 LQEKEDLQELNDR ddPTM_HeLa_A485_30min_R1 4 LQEKEDLQELNDR 13 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 162.29 1.82E-08 903424000 614302 710121 606821 757439 1028012 828511 1165977 1272685 709724 1104252 FALSE FALSE TRUE 750951.3606 793163.4737 831309.3398 798815.9746 925659.5157 871890.5548 916856.4888 960557.0083 852159.0968 828982.2987 0.905871406 0.95679181 1.002807106 0.963610412 1.11662157 1.05176016 1.106002493 1.158718358 1.027958134 1 19.66098177 -5.350485619 1.073049407 1.086884219 0.925690142 0.546956026 0.050874939 0.401283447 0.89543999 0.019037232 0.048102544 4.46E-06 5.350485619 -0.161194077 LQEKEDLQELNDR ddPTM_HeLa_A486_30min_R1 2 LQEKEDLQELNDR 13 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 157.68 1.82E-08 634070000 844590 847790 597860 369270 1145220 933080 1170580 1172040 706610 989960 FALSE FALSE TRUE 785388.6025 780608.0328 829367.4032 859679.2219 1001575.829 817966.0765 877688.5029 905192.0775 767859.5237 742067.5724 1.058378821 1.051936591 1.117644045 1.158491833 1.349709738 1.102279775 1.182760891 1.219824327 1.034756877 1 19.50119104 -4.964551724 2.874755752 1.165917133 1.054616684 0.123420432 0.092681744 0.437664542 7.325091089 0.025123252 0.058945081 1.09E-05 4.964551724 -0.111300449 LQEKLS(ph)PPYSSPQEFAQDVGR ddPTM_HeLa_A485_30min_R1 2 LQEKLSPPYSSPQEFAQDVGR 21 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LQEKLS(0.792)PPY(0.157)S(0.041)S(0.01)PQEFAQDVGR;LQEKLS(1)PPYSSPQEFAQDVGR ; 169.13 5.16E-14 504570000 162626 163457 148416 225670 238690 194689 269770 266080 169067 325540 TRUE FALSE FALSE 198801.5926 182571.8743 203321.2545 237997.7807 214925.1855 204882.615 212131.4357 200823.4628 202997.1961 244388.8691 0.813464187 0.747054786 0.831957917 0.973848693 0.879439339 0.838346753 0.868007763 0.821737355 0.830631922 1 17.89881905 LQEKLS(ph)PPYSSPQEFAQDVGR ddPTM_HeLa_A486_30min_R1 2 LQEKLSPPYSSPQEFAQDVGR 21 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LQEKLS(0.984)PPY(0.003)S(0.01)S(0.004)PQEFAQDVGR;LQEKLS(0.995)PPYS(0.005)S(0.001)PQEFAQDVGR ; 210.8 2.90E-27 430340000 233520 223130 121456 117293 230484 248250 313160 314930 184230 311470 TRUE FALSE FALSE 217151.4539 205448.3662 168487.0159 273064.0317 201574.5475 217623.439 234804.0557 243227.3139 200199.2047 233475.8847 0.93008087 0.879955403 0.721646333 1.169559897 0.86336346 0.932102428 1.005688686 1.041766323 0.857472732 1 17.83291402 -5.241754178 24.99521222 0.977199252 0.847500352 0.292791207 0.097745556 1103.626761 1401324.172 0.025819965 0.04464561 5.73E-06 5.241754178 -0.1296989 LQELAS(ph)PPAGRPTPAPR ddPTM_HeLa_A485_30min_R1 1 LQELASPPAGRPTPAPR 17 1 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 LQELAS(0.995)PPAGRPT(0.005)PAPR 45.88 0.0294 507210000 422790 485770 307210 544720 498820 491390 727800 911990 571860 840170 TRUE FALSE FALSE 516838.1769 542576.5759 420859.7631 574476.6743 449155.7293 517118.4206 572299.5844 688323.0226 686627.0566 630731.0812 0.819427157 0.860234404 0.667257054 0.91081079 0.712119226 0.819871473 0.907359097 1.09130982 1.088620931 1 19.2666655 -7.031033483 2.607701188 1.068083027 0.795975825 0.738785801 0.069477956 0.135881812 1.830652317 0.035818412 0.019565822 9.31E-08 7.031033483 -0.272107202 LQELAS(ph)PPAGRPTPAPR ddPTM_HeLa_A486_30min_R1 2 LQELASPPAGRPTPAPR 17 1 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 LQELAS(1)PPAGRPTPAPR;LQELAS(0.999)PPAGRPT(0.001)PAPR ; 101.71 0.00017209 1099370000 587100 721220 620680 181044 873520 659340 893620 949540 552110 931280 TRUE FALSE FALSE 545947.3218 664067.9006 861023.9184 421479.5815 763954.9763 577997.3345 670026.8243 733350.4703 599967.3393 698081.4264 0.782068253 0.951275704 1.233414736 0.603768508 1.094363705 0.827979821 0.959811848 1.050522822 0.859451801 1 19.4130358 -6.983227869 24.71430716 0.974025912 0.922884447 0.021831299 0.166422651 1150.761972 1695682.576 0.067410688 0.045434354 1.04E-07 6.983227869 -0.051141464 LQELEDSIDNLS(ph)QNGEGR ddPTM_HeLa_A485_30min_R1 1 LQELEDSIDNLSQNGEGR 18 0 C9JNL8;Q3MIT2 C9JNL8 PUS10 Putative tRNA pseudouridine synthase Pus10 1 0 LQELEDS(0.001)IDNLS(0.999)QNGEGR 112.56 5.94E-06 0 11736 18549 23884 15385 26970 16035 20937 27670 18068 20914 TRUE FALSE FALSE 14346.63271 20718.1442 32719.6855 16225.44359 24284.7721 16874.56781 16463.63891 20883.88912 21694.08187 15700.52469 0.913767724 1.319582918 2.083986754 1.033433207 1.546749079 1.074777317 1.048604377 1.330139567 1.381742476 1 13.93852515 -6.268874464 24.80172444 1.180283454 1.396086774 0.100488263 0.314630467 1348.919398 4499669.385 0.111545481 0.100352709 5.38E-07 6.268874464 0.21580332 LQELESCSGLGS(ph)TSDDTDVR ddPTM_HeLa_A485_30min_R1 1 LQELESCSGLGSTSDDTDVR 20 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7;B4DGD8 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 LQELESCS(0.001)GLGS(0.981)T(0.017)S(0.001)DDTDVR 229.97 7.19E-36 195680000 62808 83880 78673 76202 86029 58946 76968 79114 70552 78617 TRUE FALSE FALSE 76779.42291 93689.03634 107777.4166 80364.72231 77463.65069 62032.32141 60523.15803 59711.16745 84711.13926 59019.22874 1.300922166 1.587432407 1.826140715 1.361670154 1.312515469 1.051052729 1.025482022 1.011723954 1.435314237 1 15.84889745 -5.808107595 2.084756358 1.105235617 1.568542703 0.563488511 0.17372258 0.228752715 2.043330995 0.060422961 0.075551466 1.56E-06 5.808107595 0.463307085 LQELESCSGLGS(ph)TSDDTDVR ddPTM_HeLa_A486_30min_R1 4 LQELESCSGLGSTSDDTDVR 20 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7;B4DGD8 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 LQELESCSGLGS(0.978)T(0.021)SDDTDVR;LQELESCSGLGS(0.987)T(0.013)SDDTDVR;LQELESCSGLGS(0.977)T(0.023)SDDTDVR;LQELESCSGLGS(0.482)T(0.482)S(0.036)DDTDVR ;;; 327.25 6.27E-114 558300000 249506 283500 191417 62562 273963 216181 250953 233582 200268 216563 TRUE FALSE FALSE 232016.9179 261034.4275 265538.7887 145647.4977 239600.0059 189510.7862 188161.9051 180400.4777 217627.3915 162334.2152 1.429254563 1.608006218 1.635753673 0.897207637 1.475967378 1.167411232 1.159101948 1.11129054 1.340613199 1 17.30860758 -5.23956167 24.91021679 1.182022773 1.562705005 0.556668416 0.160232838 566.668746 645214.8152 0.041288427 0.071432416 5.76E-06 5.23956167 0.380682232 LQELNAHIVVS(ph)DPEDITDCPR ddPTM_HeLa_A485_30min_R1 1 LQELNAHIVVSDPEDITDCPR 21 0 Q16513-3;Q16513-2;Q16513;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 LQELNAHIVVS(1)DPEDITDCPR 201.21 1.34E-26 771030000 402310 480400 548520 514410 643600 477460 593990 595690 497790 602460 TRUE FALSE FALSE 491802.4715 536578.6011 751440.3738 542510.9157 579520.9242 502459.0673 467079.184 449596.0935 597691.887 452277.8095 1.087390231 1.186391616 1.661457534 1.199508144 1.281338399 1.110952288 1.03272629 0.994070644 1.321514951 1 18.78684969 -6.260601112 3.095453753 1.083743629 1.298434757 0.250127452 0.165202726 0.3768797 7.415806995 0.062101496 0.057803218 5.49E-07 6.260601112 0.214691128 LQELNAHIVVS(ph)DPEDITDCPR ddPTM_HeLa_A486_30min_R1 1 LQELNAHIVVSDPEDITDCPR 21 0 Q16513-3;Q16513-2;Q16513;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 LQELNAHIVVS(1)DPEDITDCPR 179.81 3.41E-19 510250000 256400 412810 391100 184230 502140 393660 408720 439120 407610 389590 TRUE FALSE FALSE 238427.6841 380097.4322 542544.394 428896.7505 439156.9189 345094.2316 306453.933 339141.9619 442941.963 292034.1282 0.816437741 1.301551413 1.85781161 1.468652836 1.503786293 1.181691447 1.049377122 1.161309344 1.516747257 1 18.15577745 -6.276472087 22.73115838 1.183628804 1.415151959 0.123774904 0.272257717 528.7924166 799589.0703 0.100581828 0.089171807 5.29E-07 6.276472087 0.231523156 LQELNAHIVVSDPEDITDCPRT(ph)PDTPNNDPR ddPTM_HeLa_A485_30min_R1 3 LQELNAHIVVSDPEDITDCPRTPDTPNNDPR 31 1 Q16513-3;Q16513-2;Q16513;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 LQELNAHIVVSDPEDIT(0.023)DCPRT(0.973)PDT(0.004)PNNDPR;LQELNAHIVVSDPEDIT(0.001)DCPRT(0.998)PDT(0.001)PNNDPR;LQELNAHIVVS(0.001)DPEDIT(0.036)DCPRT(0.901)PDT(0.062)PNNDPR ;; 194.37 1.51E-21 1445590000 285209 413780 447330 281123 576410 332066 401460 429490 352828 408430 TRUE FALSE FALSE 348652.7581 462167.9716 612815.982 296480.0376 519020.5965 349452.4623 315684.7914 324156.9041 423637.3433 306615.9176 1.137099342 1.507318913 1.998643732 0.966942747 1.692738592 1.139707505 1.029577309 1.057208336 1.381654764 1 18.22607307 -6.363058927 8.19100847 1.117319317 1.465237269 0.266860552 0.280922927 0.431219364 31.3503061 0.09762753 0.08598647 4.33E-07 6.363058927 0.347917952 LQFHDVAGDIFHQQCK ddPTM_HeLa_A485_30min_R1 1 LQFHDVAGDIFHQQCK 16 0 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 174.87 3.13E-12 250320000 383100 440460 400430 472910 510560 519420 618930 625590 410760 627240 FALSE FALSE TRUE 468319.2733 491967.9655 548565.7203 498743.8758 459726.8537 546616.028 486690.5493 472163.0716 493195.7643 470880.6115 0.994560536 1.044782804 1.164978355 1.059172673 0.976312981 1.160837832 1.033575258 1.002723536 1.047390256 1 18.8450018 -6.985263118 24.99549152 1.018663981 1.068399806 0.133783593 0.058202207 491.5239245 833680.8131 0.024771961 0.016693331 1.03E-07 6.985263118 0.049735825 LQFHDVAGDIFHQQCK(ac)R ddPTM_HeLa_A485_30min_R1 1 LQFHDVAGDIFHQQCKR 17 1 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 1 LQFHDVAGDIFHQQCK(1)R 75.376 0.0052313 11655000 12167 22656 29355 7736 29549 20376 19204 25842 19875 13271 FALSE TRUE FALSE 14873.50717 25305.42212 40214.63606 8158.598091 26606.99781 21442.85585 15100.90852 19504.20898 23863.7302 9962.783935 1.492906729 2.539995074 4.036485818 0.81890746 2.670638848 2.152295583 1.515731809 1.957706712 2.395287337 1 13.28233322 -10.33212565 0.204046883 1.02E-11 2.509572985 0.157023473 0.817238565 42.63030337 1.682101965 25.70592637 2.280811304 4.65E-11 10.33212565 2.509572985 LQFQVPEGLCAS(ph)SPTLTSPMEYPSPVNSLHTPPLHR ddPTM_HeLa_A486_30min_R1 1 LQFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHR 36 0 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta 1 0 LQFQVPEGLCAS(0.791)S(0.093)PT(0.093)LT(0.02)S(0.004)PMEYPSPVNSLHTPPLHR 162.96 1.91E-14 150350000 104980 141250 155410 9720.3 191040 99544 143050 145920 114590 67537 TRUE FALSE FALSE 97621.44412 130056.8356 215588.914 22629.34964 167077.9818 87263.27337 107257.377 112697.2014 124522.7535 50625.29561 1.928313562 2.569008912 4.258521584 0.446996889 3.300286543 1.723708915 2.118651865 2.22610456 2.459694348 1 15.62757081 -10.47624159 0.254289018 1.27E-15 2.551846756 0.152920968 0.941867936 42.24150104 2.040495645 30.52787259 1.437782337 3.34E-11 10.47624159 2.551846756 LQFQVPEGLCASSPTLTSPMEYPS(ph)PVNSLHTPPLHR ddPTM_HeLa_A485_30min_R1 1 LQFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHR 36 0 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta 1 0 LQFQVPEGLCASSPT(0.002)LT(0.014)S(0.014)PMEY(0.218)PS(0.25)PVNS(0.25)LHT(0.25)PPLHR 110.31 4.39E-05 205180000 26993 51304 62322 26143 66083 45926 56551 58088 47915 58191 TRUE FALSE FALSE 32997.49973 57303.55651 85377.50123 27571.12589 59503.54449 48330.61434 44468.41687 43841.82692 57531.101 43685.05463 0.755349856 1.311742815 1.954386963 0.63113406 1.362103012 1.106342083 1.017932042 1.003588694 1.316951564 1 15.41485217 -5.288869821 24.99939741 1.07517176 1.33761874 0.130503745 0.327580434 1557.621837 1419572.793 0.091726196 0.13608493 5.14E-06 5.288869821 0.262446979 LQFQVPEGLCASSPTLTSPMEYPS(ph)PVNSLHTPPLHR ddPTM_HeLa_A486_30min_R1 1 LQFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHR 36 0 Q14289 Q14289 PTK2B Protein-tyrosine kinase 2-beta 1 0 LQFQVPEGLCASSPTLT(0.003)S(0.003)PMEY(0.056)PS(0.396)PVNS(0.305)LHT(0.236)PPLHR 129.46 1.64E-06 154660000 58863 60047 59870 6870 84767 48658 62543 57185 58872 38144 TRUE FALSE FALSE 54737.00767 55288.65703 83053.26737 15993.70719 74134.73244 42655.07068 46894.07989 44165.22384 63975.07236 28592.49412 1.914383804 1.933677307 2.904722722 0.559367333 2.592803976 1.491827558 1.640083572 1.544643977 2.237477853 1 14.80334885 -11.22342293 0.180479095 7.45E-19 2.085833421 0.146201831 0.615209774 81.50653314 1.980506036 38.2302937 2.112503194 5.98E-12 11.22342293 2.085833421 LQFSLK ddPTM_HeLa_A485_30min_R1 2 LQFSLK 6 0 P20290;P20290-2 P20290 BTF3 Transcription factor BTF3 0 0 ; ; 151.51 0.01218 72642000 164734 176487 161739 179437 223510 177915 219100 219400 179918 257160 FALSE FALSE TRUE 201378.51 197125.6194 221572.9866 189239.189 201256.5596 187230.3543 172287.4951 165591.806 216025.8923 193054.7447 1.043116088 1.021086634 1.14772101 0.980235887 1.0424844 0.969830369 0.892428184 0.857745332 1.118987739 1 17.55865049 -6.087331798 1.815428058 0.953628022 1.055924519 0.201403602 0.076172103 0.500150711 3.288208764 0.029587626 0.030614791 8.18E-07 6.087331798 0.102296497 LQFSLK ddPTM_HeLa_A486_30min_R1 1 LQFSLK 6 0 P20290;P20290-2 P20290 BTF3 Transcription factor BTF3 0 0 151.51 0.01218 48956000 55344 64489 42795 23216 65495 58836 67755 63199 55301 63078 FALSE FALSE TRUE 51464.6714 59378.65678 59366.37009 54048.02127 57280.00638 51577.41252 50801.98236 48809.96732 60094.53521 47282.85823 1.088442478 1.255817838 1.255557983 1.143078555 1.211432822 1.090826876 1.07442706 1.032297309 1.270958175 1 15.52902963 -6.265911647 23.85260623 1.09451578 1.195413525 0.262362418 0.08127599 277.878833 1482044.678 0.027304855 0.024926079 5.42E-07 6.265911647 0.100897745 LQFSLKK ddPTM_HeLa_A486_30min_R1 2 LQFSLKK 7 1 P20290;P20290-2 P20290 BTF3 Transcription factor BTF3 0 0 ; ; 96.711 0.0048246 0 260040 235050 138852 89396 245660 224270 273180 277290 185441 298850 FALSE FALSE TRUE 241812.5388 216423.782 192619.213 208118.4058 214847.0321 196601.8476 204827.4746 214157.1202 201515.1752 224016.0148 1.079443088 0.966108526 0.859845726 0.929033605 0.959069968 0.877624074 0.914342998 0.955990224 0.899557004 1 17.77324235 -4.33562781 3.428475003 0.921827387 1.088145902 0.583870418 0.039189298 0.165635627 3.227516267 0.009477783 0.062849617 4.62E-05 4.33562781 0.166318515 LQGAVVPPVNGVEIHVDSVLPVPPIEFGVS(ph)PK ddPTM_HeLa_A485_30min_R1 2 LQGAVVPPVNGVEIHVDSVLPVPPIEFGVSPK 32 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 LQGAVVPPVNGVEIHVDS(0.002)VLPVPPIEFGVS(0.998)PK;LQGAVVPPVNGVEIHVDSVLPVPPIEFGVS(1)PK ; 82.037 0.00043737 51236000 39347 37622 26257.9 45831 49626 40367 54578 50960 28634 65533 TRUE FALSE FALSE 48099.6044 42021.56563 35971.78989 48334.63148 44685.06119 42480.5537 42916.96444 38461.9801 34380.58115 49196.82915 0.977697247 0.854151911 0.731181064 0.982474528 0.908291489 0.863481538 0.872352247 0.781797948 0.698837339 1 15.58627771 -7.174439847 5.665939947 0.805593372 0.88172276 0.055951646 0.096759639 0.515567465 26.16327423 0.045856963 0.026012117 6.69E-08 7.174439847 0.076129388 LQGPPT(ph)PAGK ddPTM_HeLa_A485_30min_R1 2 LQGPPTPAGK 10 0 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 0 LQGPPT(1)PAGK;LQGPPT(1)PAGK ; 116.19 0.00219 135964000 613710 600200 503800 735620 717740 659720 826290 764340 568230 933960 TRUE FALSE FALSE 750227.6722 670388.169 690176.5849 775805.0579 646279.2855 694261.9191 649746.3913 576884.4166 682268.5489 701140.9603 1.070009762 0.956138932 0.984362095 1.106489425 0.921753716 0.99018879 0.926698664 0.822779511 0.973083285 1 19.41934499 -6.255008183 1.576818806 0.920477498 1.016838346 0.250164429 0.064776069 0.499873499 2.473466526 0.028005456 0.02555659 5.56E-07 6.255008183 0.096360848 LQGPPT(ph)PAGK ddPTM_HeLa_A486_30min_R1 2 LQGPPTPAGK 10 0 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 0 LQGPPT(1)PAGK;LQGPPT(1)PAGK ; 115.37 0.00080153 117020000 655190 693210 421530 245730 640940 684420 740380 707400 583040 779360 TRUE FALSE FALSE 609264.5644 638277.515 584757.705 572071.8585 560547.3287 599983.2191 555129.0931 546340.4624 633578.3766 584203.1832 1.042898399 1.09256083 1.000949193 0.979234408 0.959507488 1.027011212 0.950232914 0.935189123 1.084517159 1 19.15611069 -4.864230341 5.638397882 0.986967589 1.067103069 0.342820481 0.04173919 0.196896362 9.068741267 0.010624035 0.022919595 1.37E-05 4.864230341 0.08013548 LQGQVS(ph)AK ddPTM_HeLa_A485_30min_R1 2 LQGQVSAK 8 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 LQGQVS(1)AK;LQGQVS(1)AK ; 103.08 0.0017091 1554780000 1387260 1226630 1049670 2074900 1873740 1568170 2196400 2293140 1195440 2615960 TRUE FALSE FALSE 1695851.201 1370073.708 1437986.613 2188246.533 1687183.866 1650276.956 1727121.197 1730743.819 1435353.843 1963849.315 0.863534278 0.697647064 0.732228589 1.114263969 0.859120837 0.840327689 0.879457087 0.88130174 0.730887972 1 20.90525281 -13.56136287 0.016589176 1.984867256 1.44E-06 0.096681757 0.11438247 12118.06123 16.2966804 1229.285475 769.79627 2.75E-14 13.56136287 -1.984865816 LQGQVS(ph)AK ddPTM_HeLa_A486_30min_R1 2 LQGQVSAK 8 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 LQGQVS(1)AK;LQGQVS(1)AK ; 119.34 0.00080506 2158800000 1569380 1537190 835680 1048560 1454180 1776150 2446300 2135450 1143250 2642800 TRUE FALSE FALSE 1459374.566 1415377.466 1159277.676 2441100.671 1271783.185 1557026.672 1834209.866 1649254.652 1242347.831 1981025.678 0.736676249 0.714466996 0.585190636 1.232240802 0.641982181 0.785969959 0.925888991 0.83252563 0.627123537 1 20.91781615 -11.56893931 2.197351149 4.682239387 0.793072367 0.113976877 0.177498618 3589582.583 493547.2402 65718157.69 0.043481161 2.70E-12 11.56893931 -3.889167021 LQGSGVSLAS(ph)KK ddPTM_HeLa_A485_30min_R1 2 LQGSGVSLASKK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LQGSGVSLAS(1)KK;LQGSGVSLAS(1)KK ; 104.44 0.00034963 1345670000 1294700 494710 306260 1868220 689350 499640 1348170 883830 873780 3096700 TRUE FALSE FALSE 1582701.548 552562.0311 419558.3185 1970276.128 620715.8935 525800.3778 1060122.466 667069.3067 1049139.631 2324749.681 0.680805147 0.237686679 0.180474621 0.847521841 0.267003325 0.226175051 0.456015749 0.286942423 0.45129144 1 21.14864395 -8.045752748 20.89854817 1.000000004 0.390655781 0.435271774 0.204416522 1141.306131 521316.7893 0.193196713 0.049883168 9.00E-09 8.045752748 -0.609344223 LQGSGVSLAS(ph)KK ddPTM_HeLa_A486_30min_R1 2 LQGSGVSLASKK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LQGSGVS(0.001)LAS(0.999)KK;LQGSGVSLAS(1)KK ; 145.69 1.11E-07 2864900000 1732600 1571350 377370 1018740 807310 2628800 3218700 3414200 1120420 2483930 TRUE FALSE FALSE 1611153.687 1446830.503 523497.7703 2371678.204 706049.6519 2304485.384 2413347.216 2636861.191 1217538.908 1861937.76 0.865310174 0.77705632 0.281157502 1.273768788 0.379201532 1.237681212 1.296148168 1.416191909 0.653909563 1 20.82837342 -6.286577183 24.86889455 1.15775833 0.725636938 0.285298816 0.318003029 889.0637935 879549.9487 0.107748532 0.095063115 5.17E-07 6.286577183 -0.432121392 LQIELGK ddPTM_HeLa_A485_30min_R1 1 LQIELGK 7 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 0 106.04 0.024752 25650000 17215 22219 23417 21948 31396 21922 27935 23891 21267 36188 FALSE FALSE TRUE 21044.41736 24817.31877 32079.92276 23146.96366 28270.104 23069.80202 21966.45904 18031.69479 25535.09183 27166.99759 0.774631694 0.913509809 1.180841668 0.852025094 1.040604649 0.849184822 0.808571465 0.663735281 0.939930581 1 14.72956751 -6.425131627 6.868639282 0.825540479 0.957005941 0.112044209 0.131636517 0.445785835 26.93811052 0.046273294 0.040624678 3.76E-07 6.425131627 0.131465462 LQIELGK ddPTM_HeLa_A486_30min_R1 2 LQIELGK 7 0 P20700;A0A0D9SFE5;E9PBF6;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 0 ; ; 119.17 0.010907 42779000 74780 77925 63230 30581 103369 86000 90420 94896 82755 96191 FALSE FALSE TRUE 69538.30816 71749.9392 87714.34936 71194.11348 90403.49614 75390.19438 67795.95963 73290.25237 89928.27003 72104.1475 0.964414816 0.995087546 1.2164952 0.987378895 1.253790514 1.045573618 0.940250485 1.016449884 1.247199685 1 16.13779463 -4.546768377 24.95719261 1.085881386 0.972082811 0.142230852 0.107734859 367.0928355 383496.0396 0.027140137 0.07181346 2.84E-05 4.546768377 -0.113798574 LQIIPTLCHLLR ddPTM_HeLa_A485_30min_R1 1 LQIIPTLCHLLR 12 0 O60443-3;O60443;O60443-2 O60443-3 DFNA5 Non-syndromic hearing impairment protein 5 0 0 80.17 0.012851 10935000 9189.9 11142 12119 8030.2 12828 9485.5 11377 11622 7921.9 13261 FALSE FALSE TRUE 11234.16155 12444.95998 16602.32241 8468.869492 11550.79928 9982.146113 8946.211008 8771.686277 9511.752666 9955.276751 1.128463008 1.250086792 1.667690696 0.850691518 1.160269028 1.002699007 0.898640111 0.881109235 0.955448342 1 13.28124571 -5.284060576 24.99502406 0.966220369 1.338880896 0.57897648 0.150225385 559.4003292 618101.4042 0.043060422 0.063917968 5.20E-06 5.284060576 0.372660527 LQIIPTLCHLLR ddPTM_HeLa_A486_30min_R1 1 LQIIPTLCHLLR 12 0 O60443-3;O60443;O60443-2 O60443-3 DFNA5 Non-syndromic hearing impairment protein 5 0 0 113.24 0.0009134 10588000 12412 14066 11640 4258.8 15848 12476 14068 13618 12049 13581 FALSE FALSE TRUE 11541.9829 12951.35893 16147.31973 9914.701628 13860.19606 10936.83797 10548.0376 10517.47868 13093.41702 10180.2292 1.133764542 1.272207008 1.586145008 0.973917328 1.36148173 1.074321388 1.036129678 1.033127886 1.286161319 1 13.31348242 -6.075907048 1.350289253 1.085023851 1.287591836 0.194267226 0.16743192 0.694330052 2.595523539 0.072528009 0.07656877 8.40E-07 6.075907048 0.202567985 LQINS(ph)PPFDQPMSR ddPTM_HeLa_A485_30min_R1 2 LQINSPPFDQPMSR 14 0 Q00537-2;Q00537;F5H6Z0;F8VQZ9 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 LQINS(1)PPFDQPMSR;LQINS(1)PPFDQPMSR ; 101.75 0.00057444 162346000 304790 375410 369050 365080 490110 404570 519400 554680 397330 514630 TRUE FALSE FALSE 372589.484 419310.9339 505576.9525 385023.396 441312.9275 425752.6596 408425.9469 418643.8603 477070.4865 386342.2121 0.96440273 1.085335541 1.308624677 0.996586404 1.142285036 1.102009168 1.057161072 1.083608902 1.234839144 1 18.55951979 -10.08716897 4.647296288 0.999995208 1.108828495 0.100701085 0.097096653 6.11E-06 1.20E-06 0.091662947 0.022230257 8.18E-11 10.08716897 0.108833287 LQINS(ph)PPFDQPMSR ddPTM_HeLa_A486_30min_R1 1 LQINSPPFDQPMSR 14 0 Q00537-2;Q00537;F5H6Z0;F8VQZ9 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 LQINS(1)PPFDQPMSR 64.104 0.01987 71452000 143570 160150 142220 63859 180860 140890 181120 182770 145340 179750 TRUE FALSE FALSE 133506.4844 147459.1307 197291.3928 148666.9793 158174.8523 123508.4243 135801.8603 141157.2608 157938.1882 134739.43 0.990849407 1.094402216 1.464243932 1.103366544 1.173931434 0.91664648 1.007885073 1.047631423 1.172174977 1 17.03981258 -6.217492402 21.42654525 1.030533232 1.174577723 0.219622802 0.128036055 142.670736 69558.84374 0.043967296 0.043966374 6.06E-07 6.217492402 0.144044492 LQIT(ph)PDSNGEQFSSLIQR ddPTM_HeLa_A485_30min_R1 1 LQITPDSNGEQFSSLIQR 18 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5;K7ERN1;Q96PU5-3 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 LQIT(0.996)PDS(0.004)NGEQFSSLIQR 138.66 1.05E-05 60331000 37219 41653 44563 39119 50361 45773 48769 49957 31699 60475 TRUE FALSE FALSE 45498.23815 46523.95602 61048.70812 41255.97192 45346.88201 48169.6035 38349.10474 37704.96742 38060.69854 45399.69546 1.002170558 1.024763615 1.344694221 0.908727944 0.9988367 1.0610116 0.844699603 0.830511461 0.838347001 1 15.470395 -6.399300328 1.121265249 0.864554099 1.086273211 0.322367596 0.1188138 0.553013428 1.434044823 0.068427858 0.054311627 3.99E-07 6.399300328 0.221719112 LQITPDS(ph)NGEQFSSLIQR ddPTM_HeLa_A485_30min_R1 1 LQITPDSNGEQFSSLIQR 18 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5;K7ERN1;Q96PU5-3 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 LQIT(0.299)PDS(0.531)NGEQFS(0.132)S(0.038)LIQR 79.88 0.0031419 48079000 23287 30023 28632 26760 36756 31312 25892 29876 26410 39083 TRUE FALSE FALSE 28467.11281 33533.92868 39224.16828 28221.83104 33096.44358 32951.4479 20359.96268 22548.86416 31710.24475 29340.32737 0.970238418 1.142929602 1.336868801 0.961878533 1.128018892 1.123077036 0.693924182 0.768528036 1.080773379 1 14.84059735 -6.733599229 24.94854784 0.866517074 1.116306013 0.376533638 0.140654555 203.5964513 182449.8132 0.053973814 0.041798805 1.85E-07 6.733599229 0.249788938 LQLEETMPS(ph)PYGR ddPTM_HeLa_A486_30min_R1 1 LQLEETMPSPYGR 13 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 LQLEETMPS(1)PYGR 145.49 9.10E-08 216220000 196930 249970 212510 84646 255980 234790 256620 226280 232960 209610 TRUE FALSE FALSE 183126.2239 230161.4668 294799.5632 197060.1658 223872.6015 205823.997 192410.9618 174760.9837 253153.1604 157122.2917 1.165501228 1.464855587 1.876242767 1.254183373 1.424830297 1.309960508 1.224593657 1.112260913 1.611185515 1 17.26152835 -6.057127024 1.496289541 1.25034094 1.479810209 0.146978282 0.226834053 0.772187341 3.51247543 0.094194638 0.100357607 8.77E-07 6.057127024 0.229469268 LQLELS(ph)K ddPTM_HeLa_A485_30min_R1 2 LQLELSK 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LQLELS(1)K;LQLELS(1)K ; 98.048 0.0049955 129791000 211820 186116 152213 315413 257786 165751 276512 208376 172584 393120 TRUE FALSE FALSE 258938.6282 207880.6472 208522.9228 332643.2135 232119.9207 174429.4661 217432.9523 157271.4593 207220.0258 295122.4188 0.877393962 0.704387854 0.706564156 1.127136376 0.786520799 0.591041056 0.736755117 0.532902447 0.702149388 1 18.17095399 -6.008688301 24.75838952 0.685320175 0.848190989 0.138175488 0.159208269 633.0391798 1803929.82 0.050087716 0.054060276 9.80E-07 6.008688301 0.162870814 LQLELS(ph)K ddPTM_HeLa_A486_30min_R1 1 LQLELSK 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LQLELS(1)K 91.658 0.006445 76564000 150340 161780 82840 96706 115780 170480 210960 185390 107710 221230 TRUE FALSE FALSE 139801.9424 148959.9636 114917.8665 225136.4553 101257.7928 149447.9109 158175.5767 143180.744 117046.3895 165832.568 0.843030679 0.898255182 0.692975257 1.357613031 0.610602573 0.901197592 0.953826975 0.863405456 0.705810631 1 17.33936784 LQLELSK ddPTM_HeLa_A485_30min_R1 2 LQLELSK 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 153.78 0.002788 240700000 492380 522690 476730 605350 664010 583030 739820 717480 553770 776930 FALSE FALSE TRUE 601908.2323 583814.0487 653092.2654 638418.7377 597898.8329 613556.5493 581751.4132 541516.905 664906.5595 583255.6493 1.031980115 1.000957384 1.119735859 1.094577889 1.025105944 1.051951318 0.997420966 0.928438337 1.139991632 1 19.15376885 -6.723398011 9.194481971 1.010519455 1.055217873 0.087294462 0.058219919 0.717728562 163.4451257 0.022308825 0.017151961 1.89E-07 6.723398011 0.044698418 LQLELSK ddPTM_HeLa_A486_30min_R1 2 LQLELSK 7 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 155 0.0026956 224030000 483200 573200 383660 181680 575060 545210 607820 599270 450230 590380 FALSE FALSE TRUE 449330.1752 527777.5444 532223.4268 422960.2216 502930.6126 477947.5335 455737.0071 462829.303 489256.2989 442545.0053 1.015332158 1.192596319 1.202642489 0.955745103 1.136450771 1.079997577 1.029809402 1.045835559 1.10555151 1 18.75546465 -5.243752378 24.99520636 1.056344287 1.142430914 0.250798927 0.067678203 1167.900249 1650469.602 0.017919173 0.030945309 5.70E-06 5.243752378 0.086086626 LQLERPVS(ph)PETQADLQR ddPTM_HeLa_A485_30min_R1 4 LQLERPVSPETQADLQR 17 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 LQLERPVS(1)PETQADLQR;LQLERPVS(0.991)PET(0.009)QADLQR;LQLERPVS(0.999)PET(0.001)QADLQR;LQLERPVS(0.999)PET(0.001)QADLQR ;;; 233.34 8.61E-36 3369330000 3274400 3381330 3841310 4112340 4012670 3104880 3575280 2831000 3863160 5938490 TRUE FALSE FALSE 4002778.983 3776747.13 5262370.419 4336986.721 3613154.485 3267446.716 2811392.221 2136692.811 4638460.777 4458133.733 0.897859782 0.847158779 1.180397614 0.972825622 0.810463459 0.732918058 0.630620881 0.479279658 1.040448998 1 22.08800846 -5.873626754 3.360104097 0.737567909 0.981088343 0.212071558 0.174238992 0.317565777 7.048265022 0.05638581 0.065624513 1.34E-06 5.873626754 0.243520433 LQLERPVS(ph)PETQADLQR ddPTM_HeLa_A486_30min_R1 4 LQLERPVSPETQADLQR 17 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 LQLERPVS(0.744)PET(0.256)QADLQR;LQLERPVS(0.846)PET(0.154)QADLQR;LQLERPVS(1)PETQADLQR;LQLERPVS(0.999)PET(0.001)QADLQR ;;; 229.07 6.96E-35 3065520000 2626650 3210450 2771500 889402 3405940 2943280 2926310 2902690 2948520 2914250 TRUE FALSE FALSE 2442535.399 2956042.25 3844699.023 2070572.804 2978735.246 2580168.039 2194116.287 2241810.852 3204100.088 2184502.831 1.118119585 1.353187649 1.759988116 0.947846244 1.363575823 1.181123687 1.004400752 1.026233896 1.466741101 1 21.05887355 -5.285783172 24.99615201 1.147712464 1.404707539 0.248863596 0.213907624 1102.645378 1132191.283 0.060030119 0.089089684 5.18E-06 5.285783172 0.256995075 LQLGT(ph)PPPLLAAR ddPTM_HeLa_A485_30min_R1 1 LQLGTPPPLLAAR 13 0 Q9P2N5 Q9P2N5 RBM27 RNA-binding protein 27 1 0 LQLGT(1)PPPLLAAR 101.53 0.0033124 344830000 117540 148310 142100 113970 173580 147360 157910 186810 129430 144880 TRUE FALSE FALSE 143686.3675 165653.5644 194668.7033 120195.8925 156297.7657 155075.5417 124171.2385 140994.5546 155405.4138 108764.0823 1.321082884 1.523053942 1.789825272 1.105106483 1.437034749 1.425797363 1.141656656 1.296333786 1.428830276 1 16.73084268 -12.78067873 0.093429888 4.83E-12 1.714605955 0.325460505 0.178513426 178.6230548 1.488865256 39.05153565 4.155120627 1.66E-13 12.78067873 1.714605955 LQLLLLNPLK ddPTM_HeLa_A486_30min_R1 1 LQLLLLNPLK 10 0 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;F8VZV1 A0A286YFF8 MON2 Protein MON2 homolog 0 0 139.19 0.00064927 0 4490.8 5090.3 4306.7 2289.1 6102.8 5403.1 6379.9 5695.2 5130.2 5770 FALSE FALSE TRUE 4176.018111 4686.926089 5974.369577 5329.140485 5337.329918 4736.520457 4783.58154 4398.527285 5574.889867 4325.154444 0.965518842 1.083643636 1.381307802 1.232127212 1.234020655 1.095110133 1.10599092 1.016964213 1.288945849 1 12.07853593 -6.279159804 23.59343241 1.102749266 1.188162949 0.087314105 0.124293977 1047.807084 1395070.535 0.045513238 0.04023981 5.26E-07 6.279159804 0.085413683 LQLLSNLFHGMDK ddPTM_HeLa_A485_30min_R1 2 LQLLSNLFHGMDK 13 0 E9PN86;J3KNJ2;Q7L2H7 E9PN86 EIF3M Eukaryotic translation initiation factor 3 subunit M 0 0 ; ; 167.55 4.73E-07 61198000 69416 65668 69138 78744 105969 66088 86663 69796 75482 123679 FALSE FALSE TRUE 84857.34972 73347.30136 94715.02327 83045.58533 95418.35428 69548.26549 68146.74208 52678.42156 90630.54504 92848.10144 0.913937371 0.789970933 1.02010727 0.894424162 1.027682341 0.749054255 0.733959457 0.567361322 0.976116298 1 16.50258479 -6.281964608 24.35652901 0.773799657 0.924603817 0.159352183 0.132593999 869.9911774 1032382.457 0.045154993 0.039874502 5.22E-07 6.281964608 0.15080416 LQLLSNLFHGMDK ddPTM_HeLa_A486_30min_R1 3 LQLLSNLFHGMDK 13 0 E9PN86;J3KNJ2;Q7L2H7 E9PN86 EIF3M Eukaryotic translation initiation factor 3 subunit M 0 0 ;; ;; 170.11 3.06E-07 69766000 157047 172510 115811 36866 165413 159324 183171 171710 145804 156603 FALSE FALSE TRUE 146038.8163 158839.6793 160656.1207 85825.9111 144665.3591 139668.2248 137339.6784 132615.3814 158442.4081 117388.5895 1.244063132 1.353110043 1.36858379 0.731126522 1.232363041 1.189793875 1.169957651 1.129712709 1.349725802 1 16.84093266 LQLPAGLESSK ddPTM_HeLa_A485_30min_R1 1 LQLPAGLESSK 11 0 Q5VUB5 Q5VUB5 FAM171A1 Protein FAM171A1 0 0 99.802 0.01284 37165000 79315 93428 74866 54814 175190 45400 151030 95334 69760 231590 FALSE FALSE TRUE 96958.34812 104353.5919 102562.0488 57808.35002 157747.4685 47777.0738 118761.2067 71953.18702 83760.19212 173858.8751 0.557684203 0.600220103 0.589915521 0.332501576 0.907330548 0.274803767 0.683089699 0.41385973 0.481771161 1 17.40755719 -10.45788652 3.421260276 1.006438477 0.538977937 0.39486579 0.171608471 105024331.4 163616846.6 6639127.438 0.038779129 3.48E-11 10.45788652 -0.46746054 LQLQGLDLS(ph)SR ddPTM_HeLa_A485_30min_R1 5 LQLQGLDLSSR 11 0 P49454 P49454 CENPF Centromere protein F 1 0 LQLQGLDLS(0.95)S(0.05)R;LQLQGLDLS(0.988)S(0.012)R;LQLQGLDLS(0.815)S(0.185)R;LQLQGLDLS(0.916)S(0.084)R;LQLQGLDLS(0.5)S(0.5)R ;;;; 181.76 1.86E-10 1112276000 1260520 1667630 1620390 1300520 2065550 1556030 1752500 2010060 1409910 1667900 TRUE FALSE FALSE 1540918.325 1862644.822 2219839.691 1371564.115 1859896.589 1637501.325 1378064.058 1517089.633 1692866.005 1252123.225 1.230644312 1.487589068 1.772860407 1.095390683 1.48539421 1.307779691 1.10058182 1.211613683 1.351996329 1 20.25594512 -6.278049238 1.006326922 1.174338025 1.452680886 0.262950945 0.188088296 0.761274309 1.626126761 0.108583198 0.097095494 5.27E-07 6.278049238 0.278342861 LQLQGLDLS(ph)SR ddPTM_HeLa_A486_30min_R1 5 LQLQGLDLSSR 11 0 P49454 P49454 CENPF Centromere protein F 1 0 LQLQGLDLS(0.915)S(0.085)R;LQLQGLDLS(0.91)S(0.09)R;LQLQGLDLS(0.587)S(0.413)R;LQLQGLDLS(0.892)S(0.108)R;LQLQGLDLS(0.907)S(0.093)R ;;;; 167.03 4.87E-08 1679743000 1943530 2152380 1872520 652968 2480300 1923740 2076840 2269110 1741370 2091800 TRUE FALSE FALSE 1807298.583 1981817.57 2597609.892 1520142.503 2169197.646 1686408.518 1557192.665 1752483.187 1892313.354 1567999.665 1.152614139 1.263914537 1.656639316 0.969478845 1.383417162 1.075515866 0.99310778 1.117655333 1.206832754 1 20.58049382 -6.279282425 23.08022057 1.080631086 1.287123586 0.264345001 0.172287406 439.1007696 567979.7223 0.060137612 0.053182197 5.26E-07 6.279282425 0.206492501 LQLQGLDLSS(ph)R ddPTM_HeLa_A485_30min_R1 1 LQLQGLDLSSR 11 0 P49454 P49454 CENPF Centromere protein F 1 0 LQLQGLDLS(0.259)S(0.741)R 181.98 1.83E-10 518630000 92669 120390 112260 99363 155280 117210 126570 136650 100840 119450 TRUE FALSE FALSE 113282.8993 134468.5632 153789.6455 104790.9491 139819.778 123346.9344 99527.28552 103136.3732 121077.663 89673.31331 1.263284417 1.499538249 1.714999032 1.168585672 1.5592128 1.375514407 1.109887455 1.150134521 1.350208424 1 16.45239108 -6.643684699 4.850726171 1.16623724 1.446309128 0.414333492 0.162524731 0.21897465 8.356159487 0.062782593 0.047806923 2.27E-07 6.643684699 0.280071888 LQLQGLDLSS(ph)R ddPTM_HeLa_A486_30min_R1 1 LQLQGLDLSSR 11 0 P49454 P49454 CENPF Centromere protein F 1 0 LQLQGLDLS(0.298)S(0.702)R 140.33 6.70E-05 0 62348 70537 63907 23844 78953 65554 71735 77454 56972 69583 TRUE FALSE FALSE 57977.72717 64947.39123 88653.50189 55510.03701 69049.97853 57466.61398 53786.14426 59819.41501 61910.37883 52158.96389 1.11155826 1.245181775 1.699679121 1.06424731 1.323837235 1.101759117 1.031196562 1.146867394 1.186955687 1 15.67062759 -6.078156008 1.603228724 1.09698465 1.31680762 0.237499759 0.168794283 0.57439127 2.97359587 0.069380109 0.072481335 8.35E-07 6.078156008 0.21982297 LQLRVPS(ph)VESLFR ddPTM_HeLa_A485_30min_R1 2 LQLRVPSVESLFR 13 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 LQLRVPS(0.999)VES(0.001)LFR;LQLRVPS(1)VESLFR ; 116.06 9.15E-05 48820000 30728 55317 45452 33142 75541 76269 96298 183116 44549 55435 TRUE FALSE FALSE 37563.33759 61785.84196 62266.58622 34952.46354 68019.8728 80262.32691 75723.14562 138206.5139 53489.57567 41616.07471 0.902616065 1.484662895 1.496214784 0.839878912 1.634461522 1.928637611 1.819564823 3.320988701 1.285310449 1 15.34485327 -6.074065169 3.105870329 2.014772396 1.223571184 0.199881144 0.61049816 0.357666395 6.731730803 0.204915423 0.212399501 8.43E-07 6.074065169 -0.791201212 LQLS(ph)DEESVFEEALMSPDTR ddPTM_HeLa_A485_30min_R1 2 LQLSDEESVFEEALMSPDTR 20 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;A0A1W2PQ63;E9PGF6 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 LQLS(0.5)DEES(0.5)VFEEALMSPDTR;LQLS(0.5)DEES(0.5)VFEEALMSPDTR ; 58.997 0.0155 14628000 9718.9 15216.9 12869.1 9932.4 17761.6 16017.8 17401.9 19457.3 11501.9 17371.6 TRUE FALSE FALSE 11880.83578 16996.38409 17629.91562 10474.98186 15993.19274 16856.46724 13683.8419 14685.36667 13810.22583 13041.17982 0.911024611 1.30328577 1.351865081 0.803223482 1.226360878 1.292556921 1.049279443 1.126076541 1.058970585 1 13.67078677 -7.859345178 1.229321428 1.001455137 1.146809293 0.062923815 0.166271472 1.306116863 4.297256912 0.157385832 0.049959404 1.38E-08 7.859345178 0.145354156 LQLS(ph)DEESVFEEALMSPDTR ddPTM_HeLa_A486_30min_R1 3 LQLSDEESVFEEALMSPDTR 20 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;A0A1W2PQ63;E9PGF6 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 LQLS(0.872)DEES(0.128)VFEEALMSPDTR;LQLS(0.876)DEES(0.124)VFEEALMSPDTR;LQLS(0.839)DEES(0.161)VFEEALMSPDTR ;; 92.993 0.00036116 30209300 32822.7 35714.8 24681.4 12696.5 40022.8 32109.6 35401.1 37870.1 27493.6 35527.2 TRUE FALSE FALSE 30521.99823 32884.62918 34238.69907 29558.09365 35002.76723 28148.24402 26543.37035 29247.90493 29876.76738 26630.95788 1.146109666 1.234827126 1.285672833 1.109914776 1.314363809 1.056974524 0.996711063 1.098267102 1.121881065 1 14.7008167 -6.287141326 23.9206813 1.057279918 1.216837736 0.603620924 0.066189979 311.8416466 290228.2287 0.022714518 0.020041163 5.16E-07 6.287141326 0.159557818 LQLS(ph)PWESSVVNR ddPTM_HeLa_A485_30min_R1 4 LQLSPWESSVVNR 13 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LQLS(0.928)PWES(0.07)S(0.001)VVNR;LQLS(1)PWESSVVNR;LQLS(0.999)PWES(0.001)SVVNR;LQLS(0.999)PWES(0.001)SVVNR ;;; 241.98 5.28E-35 1048230000 997470 1125230 1243110 1131230 1555260 1089850 1178450 1331830 1147540 1375610 TRUE FALSE FALSE 1219353.76 1256815.86 1702988.119 1193026.23 1400412.854 1146912.861 926664.5304 1005196.604 1377840.752 1032695.743 1.180748316 1.217024345 1.649070532 1.155254331 1.356074974 1.110600938 0.897325797 0.9733715 1.334217519 1 19.97798383 -6.368168871 4.449403671 1.043992418 1.316147292 0.357467568 0.167388427 0.25819347 8.464375157 0.061219116 0.053587548 4.28E-07 6.368168871 0.272154874 LQLS(ph)PWESSVVNR ddPTM_HeLa_A486_30min_R1 4 LQLSPWESSVVNR 13 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LQLS(1)PWESSVVNR;LQLS(1)PWESSVVNR;LQLS(1)PWESSVVNR;LQLS(0.989)PWES(0.011)SVVNR ;;; 222.88 1.96E-27 1129550000 1083970 1307940 1039570 321705 1360790 1096140 1084400 1076150 966630 1126160 TRUE FALSE FALSE 1007989.301 1204294.071 1442119.345 748945.4981 1190107.029 960909.3915 813071.6504 831134.1372 1050418.267 844162.2059 1.194070634 1.426614533 1.708343888 0.887205673 1.409808472 1.13829947 0.963169927 0.984566866 1.244332261 1 19.68716071 -5.810639804 1.024040854 1.055922078 1.404530223 0.282823854 0.20739401 0.678351093 1.527371368 0.096241683 0.140214789 1.55E-06 5.810639804 0.348608145 LQLSDEES(ph)VFEEALMSPDTR ddPTM_HeLa_A485_30min_R1 1 LQLSDEESVFEEALMSPDTR 20 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;A0A1W2PQ63;E9PGF6 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 LQLS(0.442)DEES(0.558)VFEEALMSPDTR 58.997 0.0155 9542700 7336 10036 12348 9178.3 13071 9258.4 12308 13331 10531 11087 TRUE FALSE FALSE 8967.867891 11209.6229 16916.03904 9679.687288 11769.60534 9743.155508 9678.295253 10061.55135 12644.4751 8323.214941 1.077452397 1.34679003 2.03239243 1.162974567 1.414069615 1.170600012 1.162807319 1.208853961 1.519181614 1 13.02292518 LQMEAPHIIVGTPGR ddPTM_HeLa_A485_30min_R1 4 LQMEAPHIIVGTPGR 15 0 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;J3QLN6;J3QKZ9;J3KS25 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 ;;; ;;; 185.26 1.85E-11 215571000 146233.5 198762 211303 130301.2 224761 182634.4 212479 225498 176493 185794.7 FALSE FALSE TRUE 178762.6376 222005.4869 289472.7728 137419.2246 202383.0057 192196.8548 167081.1259 170194.2619 211913.5262 139479.5006 1.281640935 1.591671077 2.075378615 0.985228826 1.450987456 1.377957721 1.197890193 1.22020986 1.51931664 1 17.08969358 -5.275806056 24.99343834 1.270909072 1.643774347 0.360473982 0.242618804 886.5643084 1542337.569 0.067563503 0.100737639 5.30E-06 5.275806056 0.372865275 LQMEAPHIIVGTPGR ddPTM_HeLa_A486_30min_R1 2 LQMEAPHIIVGTPGR 15 0 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;J3QLN6;J3QKZ9;J3KS25 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 ; ; 177.58 3.61E-11 122704000 123227 144885 124985 43107 164660 129375 154593 155435 119836 142091 FALSE FALSE TRUE 114589.4236 133403.7849 173382.5392 100355.2745 144006.8074 113414.0279 115912.1963 120045.8436 130223.481 106510.4887 1.075851073 1.252494346 1.627844743 0.942210253 1.352043438 1.06481558 1.088270251 1.127080018 1.222635278 1 16.70063598 -5.292194197 24.99964459 1.125973936 1.312106833 0.240742454 0.165624116 1020.2092 829294.4484 0.045938266 0.068146844 5.10E-06 5.292194197 0.186132896 LQMES(ph)PDLPKPLSR ddPTM_HeLa_A485_30min_R1 2 LQMESPDLPKPLSR 14 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6RA44 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 LQMES(1)PDLPKPLSR;LQMES(1)PDLPKPLSR ; 96.544 0.00045717 371230000 506510 530290 395470 670390 705180 584280 789640 859790 498040 911070 TRUE FALSE FALSE 619181.4021 592302.8026 541770.8099 707011.7082 634969.8032 614871.9973 620926.9632 648925.1544 597992.0597 683957.016 0.905292858 0.865994191 0.792112366 1.033707809 0.928376767 0.898992163 0.907845009 0.948780609 0.874312341 1 19.38354613 LQMES(ph)PDLPKPLSR ddPTM_HeLa_A486_30min_R1 2 LQMESPDLPKPLSR 14 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6RA44 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 LQMES(1)PDLPKPLSR;LQMES(1)PDLPKPLSR ; 97.095 0.00043829 536700000 651270 682980 411780 264891 713410 730240 866800 816540 531050 825730 TRUE FALSE FALSE 605619.3362 628858.1774 571232.2439 616679.6348 623927.4655 640150.4133 649917.4719 630631.6669 577081.8416 618961.8334 0.978443748 1.015988618 0.922887669 0.996312861 1.008022517 1.03423245 1.050012193 1.018853882 0.932338329 1 19.23949093 -5.514855778 23.47011305 1.010809653 0.973929115 0.154278746 0.035815017 300.5080992 879098.3458 0.010701671 0.014516349 3.06E-06 5.514855778 -0.036880539 LQPERGS(ph)PK ddPTM_HeLa_A485_30min_R1 8 LQPERGSPK 9 1 S4R3H4;Q9UKV3;E7EQT4;A0A087WYN3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK ;;;;;;; 92.112 0.0015627 45836370000 4145250 4622650 3491900 6170750 5460250 4922490 7735070 7904890 3733350 7826480 TRUE FALSE FALSE 5067346.562 5163228.706 4783699.12 6507842.447 4916608.338 5180223.965 6082409.105 5966203.333 4482599.101 5875482.572 0.862456232 0.878775257 0.814179782 1.107626883 0.83680077 0.881667829 1.035218645 1.015440563 0.762932924 1 22.48627592 LQPERGS(ph)PK ddPTM_HeLa_A486_30min_R1 6 LQPERGSPK 9 1 S4R3H4;Q9UKV3;E7EQT4;A0A087WYN3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK;LQPERGS(1)PK ;;;;; 77.387 0.0048367 22011000000 5312980 4384620 2365970 3282800 4383440 4644650 7038650 6502290 3310330 8595940 TRUE FALSE FALSE 4940567.538 4037166.743 3282136.947 7642524.304 3833628.081 4071640.306 5277505.323 5021860.511 3597272.07 6443460.674 0.766756839 0.626552554 0.509374871 1.186090005 0.594964147 0.631902717 0.819048271 0.779373192 0.558282614 1 22.61940431 -10.37765566 5.133656691 1.00017717 0.722480629 0.174438015 0.183166091 0.000364967 4.42E-05 0.174268514 0.042239545 4.19E-11 10.37765566 -0.277696541 LQPFHS(ph)TELEDDAIYSVHVPAGLYR ddPTM_HeLa_A485_30min_R1 2 LQPFHSTELEDDAIYSVHVPAGLYR 25 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 LQPFHS(0.98)T(0.02)ELEDDAIYSVHVPAGLYR;LQPFHS(0.986)T(0.014)ELEDDAIYSVHVPAGLYR ; 253.39 1.52E-61 192592000 38518 73639 74796 23862 79135 46257 64904 68134 61356 44162 TRUE FALSE FALSE 47086.19621 82250.44048 102466.1529 25165.52064 71256.04154 48678.94499 51036.73018 51424.02967 73669.58641 33153.22614 1.420259857 2.48091815 3.090684221 0.759067022 2.149294347 1.468301902 1.539419722 1.551101828 2.222094046 1 15.01686165 -5.258283606 24.99980885 1.573998112 2.345650423 0.295980547 0.56455233 359.6856745 2849391.459 0.151009978 0.247973205 5.52E-06 5.258283606 0.771652311 LQPFHS(ph)TELEDDAIYSVHVPAGLYR ddPTM_HeLa_A486_30min_R1 1 LQPFHSTELEDDAIYSVHVPAGLYR 25 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 LQPFHS(0.907)T(0.093)ELEDDAIYSVHVPAGLYR 207.2 8.92E-29 100960000 29141 31993 37488 2427.4 44196 21614 29414 28700 28747 9646.1 TRUE FALSE FALSE 27098.36638 29457.75816 52004.35756 5651.109874 38652.52557 18947.48444 22054.30609 22165.63652 31238.81311 7230.653774 3.747706256 4.074010329 7.192206844 0.781548951 5.345647403 2.620438625 3.050112311 3.065509317 4.320330371 1 12.81991038 -8.984815469 0.193427647 6.12E-14 4.852500923 0.22351371 1.598408576 15.95999555 1.156309858 20.16341785 6.079789082 1.04E-09 8.984815469 4.852500923 LQPFHSTELEDDAIY(ph)SVHVPAGLYR ddPTM_HeLa_A485_30min_R1 1 LQPFHSTELEDDAIYSVHVPAGLYR 25 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 LQPFHSTELEDDAIY(0.952)S(0.048)VHVPAGLYR 177.22 2.61E-15 59387000 19707 30909 30324 17959 41875 34109 37418 41133 28826 26527 TRUE FALSE FALSE 24090.75416 34523.53868 41542.10949 18940.0547 37705.77797 35894.8945 29423.33862 31045.06726 34611.11379 19914.30709 1.209720933 1.733604816 2.086043431 0.951077766 1.893401452 1.80246766 1.477497484 1.558932837 1.738002414 1 14.28151766 -10.40390207 6.405619785 0.999906812 1.613390348 0.249650902 0.314734255 0.000404152 3.76E-05 0.2940405 0.071304599 3.95E-11 10.40390207 0.613483536 LQPQEIS(ph)PPPTANLDR ddPTM_HeLa_A486_30min_R1 2 LQPQEISPPPTANLDR 16 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 LQPQEIS(0.994)PPPT(0.006)ANLDR;LQPQEIS(0.994)PPPT(0.006)ANLDR ; 70.802 0.0040444 134360000 57393 57992 47786 25288.5 70437 56305 65387 63118 59515 62207 TRUE FALSE FALSE 53370.04708 53396.50272 66290.01895 58872.90601 61602.13466 49358.66157 49026.48101 48747.40926 64673.80812 46629.9623 1.144544075 1.145111428 1.421618541 1.262555299 1.321084805 1.058518153 1.051394395 1.045409579 1.38695819 1 15.50896964 -6.263694058 24.98492166 1.107727806 1.261890429 0.266885213 0.124691014 293.0567134 3247452.636 0.043549449 0.040258399 5.45E-07 6.263694058 0.154162623 LQPS(ph)PNRR ddPTM_HeLa_A485_30min_R1 1 LQPSPNRR 8 1 O43150;O43150-2 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 LQPS(1)PNRR 52.193 0.029643 190050000 118150 136050 155210 122040 160520 116190 145030 150130 111720 142760 TRUE FALSE FALSE 144432.0599 151959.864 212628.6378 128706.7362 144538.0652 122273.5287 114043.1557 113310.3821 134141.1792 107172.5593 1.347658961 1.417898994 1.983983953 1.200929949 1.348648069 1.14090332 1.064107795 1.05727047 1.25163736 1 16.70957604 -5.765917111 1.734307174 1.111092859 1.553571394 0.494707316 0.191386847 0.30238842 1.881253978 0.068593567 0.090928839 1.71E-06 5.765917111 0.442478535 LQPS(ph)PNRR ddPTM_HeLa_A486_30min_R1 1 LQPSPNRR 8 1 O43150;O43150-2 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 LQPS(1)PNRR 58.829 0.021521 181430000 125740 144780 136390 42256 148420 128080 152300 141030 118030 121910 TRUE FALSE FALSE 116926.2753 133307.1055 189203.8607 98374.1035 129803.7796 112278.7918 114192.9291 108920.5477 128260.9354 91382.9425 1.279519702 1.458774492 2.070450518 1.076504004 1.420437733 1.22866247 1.2496088 1.191913334 1.403554448 1 16.47963728 -5.31516246 24.99977156 1.241777692 1.588505534 0.377744236 0.22162059 341.5457606 158935.8946 0.061410069 0.091085931 4.84E-06 5.31516246 0.346727842 LQPSS(ph)SPENSLDPFPPR ddPTM_HeLa_A486_30min_R1 1 LQPSSSPENSLDPFPPR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 LQPS(0.086)S(0.457)S(0.457)PENSLDPFPPR 124.25 2.01E-05 1661100000 443170 510290 474950 157820 586710 442070 503160 497160 379490 541740 TRUE FALSE FALSE 412106.0715 469852.762 658863.3596 367412.9358 513119.3609 387531.898 377264.0461 383967.5209 412384.4988 406084.7779 1.014827676 1.15703121 1.622477363 0.904769043 1.26357694 0.954312792 0.929027796 0.945535371 1.015513315 1 18.63142142 -6.270152655 24.3685543 0.962983167 1.198462463 0.285967551 0.17646101 597.5566791 1671190.331 0.0617211 0.055306717 5.37E-07 6.270152655 0.235479296 LQPSSS(ph)PENSLDPFPPR ddPTM_HeLa_A485_30min_R1 7 LQPSSSPENSLDPFPPR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 LQPSS(0.022)S(0.978)PENSLDPFPPR;LQPS(0.001)S(0.027)S(0.972)PENSLDPFPPR;LQPS(0.026)S(0.146)S(0.828)PENSLDPFPPR;LQPS(0.003)S(0.016)S(0.981)PENSLDPFPPR;LQPSS(0.004)S(0.996)PENSLDPFPPR;LQPS(0.02)S(0.129)S(0.851)PENSLDPFPPR;LQPSS(0.027)S(0.973)PENSLDPFPPR ;;;;;; 275.74 2.40E-59 5752650000 891249 1245494 1265627 990915 1567822 1205486 1369490 1699511 1224513 1314556 TRUE FALSE FALSE 1089504.265 1391143.689 1733835.094 1045046.177 1411724.137 1268603.383 1076887.274 1282703.263 1470261.527 986861.3818 1.104009424 1.409664736 1.756918577 1.058959441 1.430519182 1.285492984 1.091224455 1.299780583 1.489835912 1 19.91248793 -5.302924968 24.99944182 1.253102351 1.422145628 0.141963776 0.207880687 1038.170686 625605.2074 0.058337418 0.086529167 4.98E-06 5.302924968 0.169043278 LQPSSS(ph)PENSLDPFPPR ddPTM_HeLa_A486_30min_R1 4 LQPSSSPENSLDPFPPR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 LQPS(0.054)S(0.151)S(0.795)PENSLDPFPPR;LQPS(0.062)S(0.232)S(0.706)PENSLDPFPPR;LQPS(0.071)S(0.156)S(0.774)PENSLDPFPPR;LQPS(0.017)S(0.04)S(0.942)PENSLDPFPPR ;;; 214.5 3.14E-26 2819040000 1408604 1563220 1339894 480501 1768970 1408868 1485171 1685300 1207539 1579185 TRUE FALSE FALSE 1309868.134 1439344.754 1858736.84 1118630.611 1547089.288 1235056.19 1113565.507 1301593.98 1312209.453 1183746.797 1.106544184 1.215922829 1.570214884 0.944991457 1.306942744 1.043344906 0.940712583 1.099554383 1.108522072 1 20.17492909 -6.041996799 1.362238889 1.03902802 1.255131919 0.242018614 0.157856615 0.613987575 2.342067214 0.067756201 0.07360623 9.08E-07 6.041996799 0.2161039 LQPST(ph)PEKK ddPTM_HeLa_A485_30min_R1 1 LQPSTPEKK 9 1 K7EQT1;Q9UM11-2;Q9UM11;Q9UM11-3 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 LQPS(0.2)T(0.8)PEKK 60.49 0.026598 241470000 664460 478920 357910 1100000 801830 771590 1153200 1142400 562660 1533400 TRUE FALSE FALSE 812266.8346 534925.5279 490315.8029 1160090.215 721996.9898 811989.2593 906809.3992 862224.6088 675580.701 1151151.6 0.705612392 0.464687299 0.42593504 1.007764933 0.627195401 0.705371264 0.787741075 0.749010477 0.586873789 1 20.13464641 -14 0.079630422 1.970610941 0.373860916 0.283816032 0.156755348 344.0871671 1.937523381 60.14637553 5.663055407 1.00E-14 14 -1.596750025 LQPST(ph)PEKK ddPTM_HeLa_A486_30min_R1 2 LQPSTPEKK 9 1 K7EQT1;Q9UM11-2;Q9UM11;Q9UM11-3 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 LQPS(0.25)T(0.75)PEKK;LQPS(0.282)T(0.718)PEKK ; 91.961 0.0028069 855400000 1704980 1550370 638020 949410 1441200 2013290 2566300 2360300 1144580 3041300 TRUE FALSE FALSE 1585469.707 1427513.035 885078.4308 2210274.461 1260431.257 1764910.749 1924184.596 1822911.215 1243793.116 2279738.684 0.695461158 0.626173975 0.388236791 0.969529743 0.552884094 0.774172392 0.844037349 0.799614108 0.545585827 1 21.12043703 -5.258841949 24.99986324 0.767840767 0.57557899 0.274165377 0.157817701 332.5318491 3200551.911 0.041947522 0.068612666 5.51E-06 5.258841949 -0.192261777 LQPTPPIPAPAPKPAAPPRPLDRES(ph)PGVENK ddPTM_HeLa_A486_30min_R1 1 LQPTPPIPAPAPKPAAPPRPLDRESPGVENK 31 3 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 LQPTPPIPAPAPKPAAPPRPLDRES(1)PGVENK 162.1 1.70E-13 410110000 191360 158440 87306 105270 175040 188710 231560 231560 132170 259520 TRUE FALSE FALSE 177946.6522 145884.6374 121113.2213 245073.8801 153084.851 165428.8789 173621.2388 178838.8429 143626.602 194534.5028 0.914730547 0.74991652 0.622579643 1.259796471 0.786929048 0.85038323 0.892495862 0.919316832 0.738309143 1 17.56966653 -11.52087601 2.210326862 2.965664208 0.861317346 0.0648418 0.160051448 14285984.84 635598.5083 142824120.9 0.039313145 3.01E-12 11.52087601 -2.104346861 LQQELDDLLVDLDHQR ddPTM_HeLa_A485_30min_R1 4 LQQELDDLLVDLDHQR 16 0 P35579 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 140.27 5.98E-06 93734000 39699 50586.3 48416.2 45556.8 55839.7 48300.9 55495.4 52569.3 48611.3 55037.2 FALSE FALSE TRUE 48529.90559 56501.92774 66327.36715 48045.45263 50280.1034 50829.86044 43638.35443 39676.59675 58367.14202 41317.43892 1.174562288 1.367507987 1.605311676 1.162837143 1.216922072 1.230227762 1.056172782 0.960286934 1.412651499 1 15.33446321 -5.472592678 23.21224291 1.147964926 1.381484027 0.32415236 0.154994981 194.2010509 89643.19981 0.043541396 0.064580334 3.37E-06 5.472592678 0.233519101 LQQELDDLLVDLDHQR ddPTM_HeLa_A486_30min_R1 2 LQQELDDLLVDLDHQR 16 0 P35579 P35579 MYH9 Myosin-9 0 0 ; ; 128.74 6.27E-05 51539000 26562 31816 28010 19918.8 44841 27048 34387 34809 21128.5 39091 FALSE FALSE TRUE 24700.14097 29294.78429 38856.22213 46371.97304 39216.62365 23711.09276 25783.00889 26883.75058 22959.93539 29302.35916 0.842940353 0.999741493 1.326044156 1.582533774 1.338343559 0.809187159 0.879895327 0.917460278 0.783552453 1 14.8387292 -6.265584271 24.911221 0.872977568 1.232062749 0.431808633 0.194569995 366.5508113 2203000.542 0.075805677 0.069218201 5.43E-07 6.265584271 0.359085181 LQQGAGLESPQGQPEPGAAS(ph)PQR ddPTM_HeLa_A485_30min_R1 4 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR ;;; 217.07 4.83E-38 5666700000 1786040 2393600 2376080 1846600 2699230 2189320 2450340 2340740 2221900 2649430 TRUE FALSE FALSE 2183338.436 2673510.698 3255090.869 1947475.082 2430485.184 2303949.41 1926804.842 1766669.845 2667814.95 1988975.86 1.097719927 1.344164478 1.636566302 0.979134599 1.221978221 1.158359664 0.968742196 0.888230913 1.341300819 1 20.92359434 -5.28778901 24.99234593 1.079606254 1.357951765 0.349614641 0.174882771 810.2483576 768510.3059 0.049613716 0.073614188 5.15E-06 5.28778901 0.278345511 LQQGAGLESPQGQPEPGAAS(ph)PQR ddPTM_HeLa_A486_30min_R1 4 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR ;;; 223.34 3.04E-38 5465700000 2523300 2659390 2379770 1164540 2966190 2750880 3312390 3131910 2497090 3789160 TRUE FALSE FALSE 2346429.7 2448650.251 3301280.676 2711107.973 2594142.792 2411504.394 2483594.987 2418842.462 2713539.772 2840329.673 0.826111744 0.862100718 1.162287853 0.954504683 0.91332454 0.849022709 0.874403775 0.851606236 0.95536085 1 21.43762696 -5.839722732 4.38506727 0.893851354 0.959961689 0.03908377 0.093672031 0.572816471 20.63195817 0.030932675 0.035974554 1.45E-06 5.839722732 0.066110335 LQQGAGLESPQGQPEPGAAS(ph)PQRQQDLHLESPQR ddPTM_HeLa_A485_30min_R1 1 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQR 34 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LQQGAGLESPQGQPEPGAAS(0.999)PQRQQDLHLES(0.001)PQR 153.24 5.89E-10 636680000 65845 239060 171080 45576 303550 247580 312730 510980 128200 118510 TRUE FALSE FALSE 80491.99309 267015.9875 234369.6112 48065.70148 273327.4962 260542.906 245912.6807 385661.3538 153928.5641 88967.63801 0.904733394 3.00127095 2.634324306 0.54026051 3.072212574 2.928513241 2.764068893 4.334849867 1.730163546 1 16.44099303 LQQGAGLESPQGQPEPGAAS(ph)PQRQQDLHLESPQR ddPTM_HeLa_A486_30min_R1 1 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQR 34 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LQQGAGLESPQGQPEPGAAS(0.961)PQRQQDLHLES(0.039)PQR 146.48 1.18E-09 202290000 79575 60253 90563 22939 188320 51494 119290 149200 48567 84729 TRUE FALSE FALSE 73997.20343 55478.33284 125631.419 53403.15127 164699.1496 45141.19383 89442.38028 115230.417 52776.82666 63512.30691 1.165084486 0.873505239 1.978064175 0.840831547 2.593184811 0.710747193 1.408268486 1.814300608 0.830970079 1 15.95474855 -7.78656851 24.98488612 0.915484308 1.418552115 0.118655225 0.553163194 554.3337831 551136.0286 0.50135455 0.12966059 1.63E-08 7.78656851 0.503067807 LQQLFNHTMFILEQEEYQR ddPTM_HeLa_A486_30min_R1 1 LQQLFNHTMFILEQEEYQR 19 0 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2;A0A494C024;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35749-4;P35580 MYH9;MYH11;MYH10 Myosin-9;Myosin-11;Myosin-10 0 0 144.01 1.38E-09 0 79732 97274 88013 19176 109820 83816 96056 100080 94665 91299 FALSE FALSE TRUE 74143.19854 89565.65397 122093.9907 44642.6971 96045.35157 73475.6341 72021.77282 77293.96873 102870.6384 68437.13614 1.083376697 1.308728843 1.784031267 0.65231685 1.403409859 1.073622279 1.052378531 1.129415593 1.503140608 1 16.06249177 -5.250646453 24.99903688 1.129236547 1.383713851 0.17934636 0.269111354 1363.310557 3157751.766 0.071367276 0.122047232 5.62E-06 5.250646453 0.254477304 LQQLSVS(ph)ATHLADKVEEAVLDR ddPTM_HeLa_A485_30min_R1 2 LQQLSVSATHLADKVEEAVLDR 22 1 Q2KHM9;Q2KHM9-2 Q2KHM9 KIAA0753 Uncharacterized protein KIAA0753 1 0 LQQLS(0.006)VS(0.985)AT(0.009)HLADKVEEAVLDR;LQQLSVS(0.998)AT(0.002)HLADKVEEAVLDR ; 203.78 4.05E-27 54018000 48365 49313 42101 54856 58171 57588 75542 81956 39930 74196 TRUE FALSE FALSE 59123.62739 55079.72638 57675.91187 57852.64438 52379.29099 60603.21863 59401.83458 61856.1625 47943.58474 55700.30268 1.061459715 0.988858655 1.035468554 1.038641472 0.940377134 1.088023147 1.066454431 1.110517529 0.860741907 1 15.76539755 -7.762292298 24.99999898 0.930370973 1.038240841 0.389102243 0.055459457 23.43948801 686844.555 0.043792034 0.01385094 1.73E-08 7.762292298 0.107869868 LQQLSVS(ph)ATHLADKVEEAVLDR ddPTM_HeLa_A486_30min_R1 1 LQQLSVSATHLADKVEEAVLDR 22 1 Q2KHM9;Q2KHM9-2 Q2KHM9 KIAA0753 Uncharacterized protein KIAA0753 1 0 LQQLS(0.021)VS(0.771)AT(0.207)HLADKVEEAVLDR 102.05 0.00026041 21027000 22256 25961 17113 11312 32568 26354 33269 30348 22679 30840 TRUE FALSE FALSE 20695.96933 23903.75581 23739.6119 26334.90768 28483.01776 23102.71143 24944.74432 23438.42289 24644.83398 23117.46327 0.89525261 1.034012925 1.026912496 1.139178091 1.232099622 0.999361875 1.07904332 1.01388386 1.066069996 1 14.49669548 -4.16190732 1.630009756 1.077093251 0.798260853 0.372756632 0.067805654 1.456687446 3.088751789 0.01973932 0.690115594 6.89E-05 4.16190732 -0.278832398 LQQQAALS(ph)PTTAPAVSSVSK ddPTM_HeLa_A485_30min_R1 2 LQQQAALSPTTAPAVSSVSK 20 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LQQQAALS(0.988)PT(0.012)TAPAVSSVSK;LQQQAALS(0.938)PT(0.049)T(0.013)APAVSSVSK ; 374.03 4.44E-142 412790000 507220 597340 474000 557510 746640 625810 731250 801730 508940 734040 TRUE FALSE FALSE 620049.3391 667193.7168 649352.3248 587965.3596 672301.9 658576.4439 575012.4637 605104.4604 611079.5897 551057.337 1.125199317 1.210751898 1.178375246 1.066976737 1.220021683 1.195114192 1.043471205 1.098078947 1.108921974 1 19.07184291 -7.863734048 0.46661435 0.99811565 1.171257665 0.456325844 0.052537098 0.974015333 0.556241722 0.065777032 0.035625007 1.37E-08 7.863734048 0.173142014 LQQQAALS(ph)PTTAPAVSSVSK ddPTM_HeLa_A486_30min_R1 2 LQQQAALSPTTAPAVSSVSK 20 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LQQQAALS(0.919)PT(0.072)T(0.009)APAVSSVSK;LQQQAALS(0.937)PT(0.051)T(0.012)APAVSSVSK ; 293.72 9.43E-87 444860000 778640 842800 549240 292276 867510 792540 884730 939520 661790 917510 TRUE FALSE FALSE 724061.3569 776013.4586 761920.4372 680433.2988 758698.8066 694764.4728 663361.1963 725611.8056 719154.49 687759.524 1.052782741 1.12832092 1.107829715 0.989347694 1.103145475 1.010185172 0.964524915 1.055037088 1.045648173 1 19.39154469 -5.246754632 24.73337915 1.026523258 1.099512113 0.40052446 0.040408866 709.9933786 1195831.931 0.011046013 0.01903433 5.67E-06 5.246754632 0.072988855 LQQQHSEQPPLQPS(ph)PVMTR ddPTM_HeLa_A485_30min_R1 4 LQQQHSEQPPLQPSPVMTR 19 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 LQQQHSEQPPLQPS(0.999)PVMT(0.001)R;LQQQHSEQPPLQPS(0.998)PVMT(0.002)R;LQQQHSEQPPLQPS(0.997)PVMT(0.003)R;LQQQHSEQPPLQPS(0.976)PVMT(0.024)R ;;; 129.78 2.96E-06 3618900000 1188390 1327760 1053097 1110920 1163560 1168060 1271700 1669460 1089905 2113960 TRUE FALSE FALSE 1452743.256 1483029.982 1442681.403 1171606.747 1047711.881 1229217.815 999990.9062 1260022.317 1308638.936 1586988.677 0.915408709 0.934493109 0.909068492 0.738257786 0.66018863 0.774559916 0.630118489 0.793970578 0.824605087 1 20.5978604 -5.237164481 7.118495647 0.755108569 0.921948846 0.311469442 0.095891298 0.202572001 43.79384424 0.025209126 0.042718077 5.79E-06 5.237164481 0.166840277 LQQQHSEQPPLQPS(ph)PVMTR ddPTM_HeLa_A486_30min_R1 6 LQQQHSEQPPLQPSPVMTR 19 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 LQQQHSEQPPLQPS(1)PVMTR;LQQQHSEQPPLQPS(0.954)PVMT(0.046)R;LQQQHSEQPPLQPS(1)PVMTR;LQQQHSEQPPLQPS(0.999)PVMT(0.001)R;LQQQHSEQPPLQPS(0.999)PVMT(0.001)R;LQQQHSEQPPLQPS(0.996)PVMT(0.004)R ;;;;; 216.3 1.45E-34 3064606000 882549 832609 761414 287990.4 907811 731156 835219 714756 832358 928638 TRUE FALSE FALSE 820686.8726 766630.0305 1056253.892 670456.2054 793944.8794 640953.4066 626238.3722 552021.6618 904507.4616 696101.0004 1.178976718 1.10132011 1.517385971 0.963159376 1.140559888 0.920776448 0.899637225 0.793019492 1.299391124 1 19.40893712 -5.318751333 24.99957179 0.991817524 1.249438069 0.348744135 0.164127597 296.3742033 129278.2025 0.045642065 0.067698159 4.80E-06 5.318751333 0.257620545 LQQTEAELR ddPTM_HeLa_A486_30min_R1 1 LQQTEAELR 9 0 A0A140T936;P26640 A0A140T936 VARS Valine--tRNA ligase 0 0 96.492 0.030342 67341000 75689 199540 206600 73014 317920 208990 236540 267400 172200 135510 FALSE FALSE TRUE 70383.59196 183727.7237 286601.0529 169980.2819 278043.5091 183206.9387 177355.1901 206518.8573 187126.4346 101577.414 0.692905925 1.808745827 2.821503735 1.673406275 2.737257213 1.803618851 1.746010094 2.033117887 1.842205145 1 16.63222012 -8.854864804 1.157323507 0.99678775 1.955475908 0.188612717 0.559654165 11.78259381 14.3334342 0.62938626 0.164736085 1.40E-09 8.854864804 0.958688158 LQQTVPADAS(ph)PDSK ddPTM_HeLa_A485_30min_R1 3 LQQTVPADASPDSK 14 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 LQQTVPADAS(1)PDSK;LQQTVPADAS(1)PDSK;LQQTVPADAS(1)PDSK ;; 209.93 3.12E-22 643800000 1039250 758440 654310 1572100 1001640 820630 1264150 1004070 735400 2088320 TRUE FALSE FALSE 1270427.577 847132.9604 896366.4971 1657979.842 901913.2046 863596.9179 994054.0253 757820.2582 882988.0345 1567740.257 0.810355907 0.540352879 0.57175702 1.057560291 0.575295047 0.550854591 0.634068061 0.48338381 0.563223423 1 20.58025512 -10.00468405 4.805446079 1.000005314 0.640406611 0.305590866 0.161411317 221610617.7 17.66413842 14534.91339 0.040026982 9.89E-11 10.00468405 -0.359598703 LQQTVPADAS(ph)PDSK ddPTM_HeLa_A486_30min_R1 5 LQQTVPADASPDSK 14 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 LQQTVPADAS(0.999)PDS(0.001)K;LQQTVPADAS(1)PDSK;LQQTVPADAS(1)PDSK;LQQTVPADAS(1)PDSK;LQQTVPADAS(1)PDSK ;;;; 209.42 3.41E-22 859140000 1861370 1791470 908439 760325 1486970 2099120 2429460 2206730 1520730 2737500 TRUE FALSE FALSE 1730897.575 1649507.393 1260210.91 1770075.025 1300460.357 1840151.917 1821583.412 1704305.752 1652548.101 2052012.182 0.843512329 0.803848733 0.614134224 0.86260454 0.633748848 0.89675487 0.887705944 0.830553428 0.805330551 1 20.96860786 -6.299569842 24.84297343 0.873705884 0.753007357 0.352800729 0.089168759 640.5148057 417309.8395 0.030362396 0.026777668 5.02E-07 6.299569842 -0.120698528 LQQTVPADAS(ph)PDSKCPICLDR ddPTM_HeLa_A486_30min_R1 1 LQQTVPADASPDSKCPICLDR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 LQQTVPADAS(0.999)PDS(0.001)KCPICLDR 124.86 5.12E-09 0 136790 172720 103670 63577 152390 139740 200490 203680 126620 191790 TRUE FALSE FALSE 127201.7274 159033.0382 143813.8004 148010.469 133275.8252 122500.2996 150325.2814 157306.5103 137595.5235 143764.5357 0.884792114 1.10620493 1.000342676 1.029533941 0.927042435 0.852089836 1.045635356 1.094195516 0.957089472 1 17.1333483 -9.907750376 5.093427161 1.00000002 0.992524221 0 0.080239333 1.91E-08 3.95E-09 0.079454088 0.019270394 1.24E-10 9.907750376 -0.007475799 LQQTVPADAS(ph)PDSKCPICLDRFDNVSYLDR ddPTM_HeLa_A485_30min_R1 1 LQQTVPADASPDSKCPICLDRFDNVSYLDR 30 2 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 LQQT(0.001)VPADAS(0.885)PDS(0.113)KCPICLDRFDNVS(0.001)YLDR 53.288 0.012122 435810000 108540 113320 123020 119080 228010 145930 259100 288060 131060 207110 TRUE FALSE FALSE 132684.3485 126571.7882 168530.2173 125585.0389 205308.5238 153570.6691 203741.1683 217412.8333 157362.5398 155481.2886 0.853378241 0.814064441 1.083926039 0.807718022 1.320470943 0.98771158 1.310390274 1.39832153 1.012099535 1 17.24638144 -5.756536414 24.99999728 1.189170254 0.898232173 0.444692099 0.153354063 111.3128049 567575.1217 0.044903121 0.056128854 1.75E-06 5.756536414 -0.29093808 LQS(ph)EPESIRK ddPTM_HeLa_A485_30min_R1 1 LQSEPESIRK 10 1 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 1 0 LQS(0.996)EPES(0.004)IRK 88.092 0.0020839 236700000 242600 234980 192600 311360 343280 313640 436940 438700 250160 436700 TRUE FALSE FALSE 296565.533 262458.8669 263850.7548 328368.8084 309101.8379 330061.7054 343584.1995 331108.1371 300364.8174 327838.7269 0.904607994 0.800573103 0.804818751 1.001616897 0.942847237 1.006780708 1.048028105 1.009972618 0.916196876 1 18.32262676 -5.265331822 24.99823245 0.99099817 0.833057261 0.720787768 0.043521503 168.0014374 1078948.254 0.012452611 0.019268199 5.43E-06 5.265331822 -0.15794091 LQS(ph)EPESIRK ddPTM_HeLa_A486_30min_R1 2 LQSEPESIRK 10 1 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 1 0 LQS(0.983)EPES(0.017)IRK;LQS(1)EPESIRK ; 104.17 0.00061849 416630000 699280 689890 392960 303470 715990 746980 887710 908260 524510 909500 TRUE FALSE FALSE 650264.0831 635220.6039 545124.6358 706493.4965 626183.8579 654825.2023 665595.5688 701469.0252 569974.9491 681755.2801 0.95380865 0.931742844 0.799589899 1.036286065 0.918487727 0.960498908 0.976296903 1.02891616 0.836040388 1 19.37889444 -5.276899106 24.99930941 0.964740751 0.898716686 0.192184961 0.065792912 1333.262507 2155961.81 0.017929637 0.026700473 5.29E-06 5.276899106 -0.066024064 LQS(ph)IGTENTEENRR ddPTM_HeLa_A486_30min_R1 1 LQSIGTENTEENRR 14 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 LQS(0.991)IGT(0.009)ENTEENRR 103.29 0.00027351 525650000 71624 66643 63821 20492 78967 61988 57802 80652 59453 82433 TRUE FALSE FALSE 66603.52747 61361.96597 88534.20039 47706.41161 69062.22252 54340.55081 43339.32823 62289.30022 64606.43391 61791.24025 1.077879764 0.99305283 1.432795329 0.772057842 1.117670114 0.879421591 0.701383045 1.008060365 1.045559753 1 15.91511471 -5.283830592 24.9946665 0.928291397 1.150423758 0.317354276 0.157850558 974.4358625 1087732.502 0.044539346 0.066120313 5.20E-06 5.283830592 0.222132361 LQS(ph)PIKEENTTAVEEIGR ddPTM_HeLa_A485_30min_R1 3 LQSPIKEENTTAVEEIGR 18 1 S4R3Y0;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9;Q9NS73-3;Q9NS73-2;Q9NS73-5;Q9NS73 S4R3Y0 MBIP MAP3K12-binding inhibitory protein 1 1 0 LQS(1)PIKEENTTAVEEIGR;LQS(1)PIKEENTTAVEEIGR;LQS(1)PIKEENTTAVEEIGR ;; 171.78 1.07E-12 671540000 312376 312897 238000 521160 423950 358941 531250 512070 297732 725910 TRUE FALSE FALSE 381862.9635 349487.5823 326046.104 549629.6512 381740.0494 377734.5957 417744.0976 386484.0296 357484.0814 544953.9964 0.700725137 0.641315753 0.598300235 1.008579907 0.700499587 0.69314951 0.766567638 0.709204873 0.655989467 1 19.05577492 -11.05638698 2.43883842 1.381869494 0.721782758 0.38700326 0.105917131 11277130.34 4192015.376 23977499.97 0.027525858 8.78E-12 11.05638698 -0.660086736 LQS(ph)PIKEENTTAVEEIGR ddPTM_HeLa_A486_30min_R1 3 LQSPIKEENTTAVEEIGR 18 1 S4R3Y0;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9;Q9NS73-3;Q9NS73-2;Q9NS73-5;Q9NS73 S4R3Y0 MBIP MAP3K12-binding inhibitory protein 1 1 0 LQS(1)PIKEENTTAVEEIGR;LQS(1)PIKEENTTAVEEIGR;LQS(1)PIKEENTTAVEEIGR ;; 158.77 1.89E-09 571085000 335690 365340 183051 179484 352350 423940 474450 450090 281274 553180 TRUE FALSE FALSE 312159.8645 336389.1279 253933.2495 417847.8226 308154.9775 371638.5931 355737.5918 347614.3324 305655.0568 414660.1274 0.752808973 0.811240593 0.612388876 1.007687489 0.743150733 0.896248683 0.857901612 0.838311449 0.73712189 1 18.6615698 -14 0.134380211 1.583631487 0.741889132 0.243370784 0.101200445 211.1955266 1.765674604 33.82252646 0.68277674 1.00E-14 14 -0.841742355 LQS(ph)PLEPHSK ddPTM_HeLa_A485_30min_R1 1 LQSPLEPHSK 10 0 O15211;O15211-2 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 0 LQS(1)PLEPHSK 97.69 0.0015054 135860000 97606 101860 82033 112500 136120 111270 140710 139520 86551 132730 TRUE FALSE FALSE 119318.118 113771.6409 112380.4204 118645.5901 122567.4149 117095.9251 110646.159 105302.5012 103920.9918 99642.85371 1.197457856 1.141794285 1.127832215 1.190708472 1.230067288 1.175156278 1.11042744 1.056799332 1.042934721 1 16.60447872 -7.158782504 1.704421337 1.023741673 1.176667492 0.836055599 0.028797016 0.170305924 0.925523657 0.023162484 0.009935781 6.94E-08 7.158782504 0.152925818 LQS(ph)PLEPHSK ddPTM_HeLa_A486_30min_R1 2 LQSPLEPHSK 10 0 O15211;O15211-2 O15211 RGL2 Ral guanine nucleotide dissociation stimulator-like 2 1 0 LQS(1)PLEPHSK;LQS(1)PLEPHSK ; 112.15 0.00030363 167230000 288995 277739 192716 98769 328260 270404 322370 347710 237587 304450 TRUE FALSE FALSE 268737.9429 255729.9501 267340.7963 229939.2235 287086.5699 237044.3037 241709.6163 268544.0235 258181.2325 228213.7384 1.177571275 1.120572109 1.171449178 1.007560829 1.257972337 1.038694276 1.059137009 1.176721548 1.131313278 1 17.80002612 -10.73533842 2.346107757 0.970064951 1.125149498 0.220974539 0.071352282 8730419.489 5869251.845 1519761.341 0.017517045 1.84E-11 10.73533842 0.155084547 LQSFDS(ph)PER ddPTM_HeLa_A485_30min_R1 6 LQSFDSPER 9 0 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 0 LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER ;;;;; 224.49 3.40E-12 3824420000 2969780 3731500 3967030 3367110 4894980 3482120 4191190 4404130 3614010 4410070 TRUE FALSE FALSE 3630397.315 4167866.465 5434599.479 3551046.693 4407618.604 3664438.419 3295708.018 3324010.212 4339308.657 3310720.71 1.09655801 1.258900049 1.641515535 1.072590232 1.331316952 1.106840093 0.995465431 1.004014081 1.310683998 1 21.65871388 -6.336967728 5.223926646 1.075137897 1.287402662 0.254285016 0.168434083 0.317245297 15.71915081 0.060560338 0.053408007 4.60E-07 6.336967728 0.212264765 LQSFDS(ph)PER ddPTM_HeLa_A486_30min_R1 6 LQSFDSPER 9 0 P78332;E9PGM9;P78332-2 P78332 RBM6 RNA-binding protein 6 1 0 LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER ;;;;; 254.52 2.64E-21 5065990000 3828150 5209990 4336390 1633950 5935350 4600890 4987050 5182200 4226570 4367600 TRUE FALSE FALSE 3559816.454 4797131.418 6015556.341 3803918.175 5190883.058 4033278.97 3739237.342 4002326.187 4592932.491 3273924.532 1.087323919 1.465254123 1.83741448 1.161883281 1.585523126 1.231940117 1.14212692 1.222485781 1.402882823 1 21.64258964 -6.388581636 7.382656967 1.207404039 1.437170293 0.216765363 0.216099241 0.436619207 24.2747264 0.075922165 0.066796601 4.09E-07 6.388581636 0.229766254 LQSIGTENTEENRR ddPTM_HeLa_A485_30min_R1 7 LQSIGTENTEENRR 14 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;;;;; ;;;;;; 225.09 1.69E-27 3965260000 1095212 1567619 1626614 1178231 1858353 1621643 1705382 1988665 1439165 1648758 FALSE FALSE TRUE 1338838.131 1750938.406 2228366.208 1242594.776 1673328.85 1706549.72 1341013.204 1500941.791 1727992.215 1237752.974 1.081668281 1.414610542 1.800331936 1.003911768 1.351908568 1.378748229 1.083425556 1.212634364 1.396071956 1 20.23929198 -13.73692184 0.143567169 4.17E-09 1.414661263 0.145707923 0.217512532 239.2389293 2.230225341 68.71729656 1.279063574 1.83E-14 13.73692184 1.414661259 LQSIGTENTEENRR ddPTM_HeLa_A486_30min_R1 4 LQSIGTENTEENRR 14 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 238.07 7.85E-35 3071150000 984310 1052010 981440 357992 1362450 1004730 1098550 1145670 939860 1114080 FALSE FALSE TRUE 915314.952 968644.8962 1361479.852 833423.4679 1191558.817 880776.6279 823681.1707 884825.9508 1021327.822 835107.1166 1.096044967 1.159904972 1.630305652 0.997983913 1.426833508 1.05468701 0.986317988 1.059535877 1.222990202 1 19.67160173 -6.299374736 24.1269826 1.063527853 1.262300778 0.241663026 0.174930676 553.2016802 351835.5595 0.060305164 0.053185567 5.02E-07 6.299374736 0.198772925 LQSS(ph)QEPEAPPPR ddPTM_HeLa_A485_30min_R1 1 LQSSQEPEAPPPR 13 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 LQS(0.032)S(0.968)QEPEAPPPR 168.93 4.09E-10 0 85020 92612 85685 115020 116340 94658 109090 117090 84515 154860 TRUE FALSE FALSE 103932.4057 103442.1678 117383.4472 121303.2514 104756.7811 99614.14651 85782.03032 88373.49391 101476.3853 116256.252 0.89399412 0.889777247 1.009695781 1.043412714 0.90108514 0.856849802 0.737870255 0.760161216 0.872868199 1 16.82694878 -6.181872096 3.046808881 0.821988876 0.958263315 0.280719644 0.080932225 0.293139128 5.311853725 0.029322843 0.028741214 6.58E-07 6.181872096 0.136274439 LQSVQATGPS(ph)SPGR ddPTM_HeLa_A486_30min_R1 1 LQSVQATGPSSPGR 14 0 D6REY2;P23508;P23508-2;A0A096LNU0 D6REY2 MCC Colorectal mutant cancer protein 1 0 LQSVQAT(0.002)GPS(0.499)S(0.499)PGR 57.328 0.036179 551690000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LQSVQATGPSS(ph)PGR ddPTM_HeLa_A485_30min_R1 3 LQSVQATGPSSPGR 14 0 D6REY2;P23508;P23508-2;A0A096LNU0 D6REY2 MCC Colorectal mutant cancer protein 1 0 LQSVQATGPS(0.003)S(0.997)PGR;LQSVQATGPS(0.004)S(0.996)PGR;LQSVQATGPSS(1)PGR ;; 195.6 2.09E-18 1696950000 810460 1098480 1052080 878030 1234290 950700 1149100 1205220 995670 1129210 TRUE FALSE FALSE 990744.0309 1226937.68 1441288.173 925994.5556 1111399.754 1000477.182 903585.3977 909637.9053 1195491.836 847718.7286 1.168717875 1.447340538 1.700196214 1.092337027 1.311047776 1.180199456 1.065902365 1.073042124 1.41024587 1 19.69322614 -5.290325666 24.98697801 1.167854802 1.439610547 0.369792253 0.165535348 735.35565 636089.6142 0.046544791 0.069048477 5.12E-06 5.290325666 0.271755745 LQSVQATGPSS(ph)PGR ddPTM_HeLa_A486_30min_R1 4 LQSVQATGPSSPGR 14 0 D6REY2;P23508;P23508-2;A0A096LNU0 D6REY2 MCC Colorectal mutant cancer protein 1 0 LQSVQATGPS(0.013)S(0.987)PGR;LQSVQATGPS(0.022)S(0.978)PGR;LQSVQATGPS(0.049)S(0.951)PGR;LQSVQATGPSS(1)PGR ;;; 251.07 3.11E-36 2285400000 1176360 1283630 1074990 365239 1400050 1085900 1144350 1178450 966580 1200770 TRUE FALSE FALSE 1093903.239 1181910.484 1491254.917 850294.8502 1224442.674 951932.6986 858021.5263 910142.6604 1050363.933 900089.3763 1.215327353 1.313103471 1.656785378 0.944678243 1.360356767 1.057597972 0.953262586 1.011169206 1.166955149 1 19.77970874 -5.883149634 1.156720501 1.032759655 1.355339516 0.353277637 0.172517414 0.523143174 1.484960398 0.075481936 0.097970716 1.31E-06 5.883149634 0.322579861 LQT(ph)MYEMEMSGKIAKS(ph)HNT(ph)IWS(ph)VVK ddPTM_HeLa_A486_30min_R1 1 LQTMYEMEMSGKIAKSHNTIWSVVK 25 2 Q9BXI2 Q9BXI2 SLC25A2 Mitochondrial ornithine transporter 2 4 0 LQT(0.96)MY(0.04)EMEMS(0.54)GKIAKS(0.597)HNT(0.937)IWS(0.926)VVK 55.629 0.022595 217000000 102080 81828 38536 64120 64961 145550 219170 170150 77088 233700 TRUE FALSE FALSE 94924.71914 75343.65127 53458.17123 149274.6004 56812.98564 127593.5208 164331.3479 131410.5593 83770.04991 175179.9989 0.541869618 0.430092772 0.305161386 0.852121255 0.324312056 0.728356671 0.938071406 0.750145908 0.478194146 1 17.41847854 -6.422851311 7.055446614 0.779337263 0.49800224 0.365212998 0.191010768 0.307204545 18.8201244 0.066821399 0.058699543 3.78E-07 6.422851311 -0.281335023 LQT(ph)PNT(ph)FPK ddPTM_HeLa_A485_30min_R1 3 LQTPNTFPK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 2 0 LQT(1)PNT(1)FPK;LQT(1)PNT(1)FPK;LQT(1)PNT(1)FPK ;; 132.69 0.00031455 1139360000 1531870 1050670 758170 2518470 2015560 1221630 2309690 2137210 1060070 3161440 TRUE FALSE FALSE 1872629.197 1173536.717 1038648.633 2656047.639 1814883.769 1285592.658 1816205.863 1613055.896 1272816.325 2373351.19 0.789023219 0.494463998 0.437629558 1.119112776 0.764692464 0.541678224 0.765249522 0.67965327 0.536294979 1 21.17849416 -10.47171806 2.934079407 1.008952532 0.681937465 0.206536946 0.187643589 51747187.88 58885703.1 3775446.394 0.049640531 3.38E-11 10.47171806 -0.327015067 LQT(ph)PNT(ph)FPK ddPTM_HeLa_A486_30min_R1 4 LQTPNTFPK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 2 0 LQT(1)PNT(1)FPK;LQT(1)PNT(1)FPK;LQT(1)PNT(1)FPK;LQT(1)PNT(1)FPK ;;; 129.87 0.00035869 1635260000 2392640 2461100 1151510 1832370 2270280 3165190 4319400 3809410 1865330 4482400 TRUE FALSE FALSE 2224928.292 2266073.473 1597405.511 4265849.963 1985520.313 2774701.039 3238640.434 2942090.502 2027018.306 3359977.864 0.662185402 0.674431072 0.475421439 1.269606567 0.590932558 0.825809321 0.963887432 0.875627942 0.603283232 1 21.6800203 LQT(ph)PNTFPK ddPTM_HeLa_A485_30min_R1 1 LQTPNTFPK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 LQT(0.996)PNT(0.004)FPK 91.469 0.016098 202430000 218830 255580 196340 343860 319390 231010 324370 330770 217780 480990 TRUE FALSE FALSE 267507.9785 285467.8577 268974.3364 362644.2011 287590.4102 243105.3264 255065.6996 249648.1389 261486.4484 361088.045 0.740838647 0.790576874 0.744899589 1.004309631 0.796455087 0.673257755 0.706380904 0.69137747 0.724162575 1 18.46199113 -6.01390157 24.83001678 0.736278176 0.823632193 0.044594698 0.111071178 1315.629688 2349887.66 0.035064408 0.036491211 9.68E-07 6.01390157 0.087354017 LQT(ph)PNTFPK ddPTM_HeLa_A486_30min_R1 1 LQTPNTFPK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 LQT(0.993)PNT(0.007)FPK 101.71 0.0079905 242760000 435160 394700 193420 161530 365960 387080 453070 491770 309190 578950 TRUE FALSE FALSE 404657.5312 363422.5345 268317.404 376050.0033 320057.8844 339326.0051 339707.0939 379804.7063 335990.8381 433977.1517 0.932439714 0.837423199 0.618275416 0.866520281 0.737499389 0.781898318 0.782776449 0.875172126 0.774213197 1 18.72725956 -9.53329906 0.604632711 1.026728113 0.792361245 0.342213458 0.082304983 13.68638141 3.913239611 0.874522918 0.033421516 2.93E-10 9.53329906 -0.234366868 LQTLS(ph)PSHK ddPTM_HeLa_A486_30min_R1 2 LQTLSPSHK 9 0 H0YAP0;Q96GY0 H0YAP0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A 1 0 LQT(0.006)LS(0.993)PS(0.001)HK;LQTLS(1)PSHK ; 110.38 0.00067456 672960000 474400 477300 303870 159171 494000 475900 534040 530090 367050 557230 TRUE FALSE FALSE 441147.0098 439477.0097 421536.6019 370558.1321 432037.9136 417188.2966 400417.5435 409400.0788 398866.1895 417695.981 1.056143774 1.052145651 1.009194776 0.887147947 1.034335817 0.99878456 0.958633939 0.980138899 0.954919864 1 18.67209374 -4.92821055 4.556643587 0.973773167 1.052425411 0.436855824 0.03640913 0.187688932 7.451466212 0.009621632 0.02099008 1.18E-05 4.92821055 0.078652244 LQTTDNLLPMS(ph)PEEFDEVSR ddPTM_HeLa_A485_30min_R1 2 LQTTDNLLPMSPEEFDEVSR 20 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta 1 0 LQTTDNLLPMS(1)PEEFDEVSR;LQTTDNLLPMS(0.996)PEEFDEVS(0.004)R ; 95.48 0.00028883 298560000 139867 190044 190323 131729 204517 162592 204974 229853 159998 197519 TRUE FALSE FALSE 170979.9316 212267.9926 260731.3977 138925.0217 184154.5694 171105.0657 161179.6304 173481.1914 192108.131 148281.1484 1.15307936 1.431523798 1.758358366 0.936902791 1.2419284 1.153923257 1.086986661 1.169947719 1.295566787 1 17.17797567 -5.274587942 24.99961171 1.137856379 1.446040863 0.432946876 0.168090905 733.6511796 1394903.515 0.047160906 0.070433409 5.31E-06 5.274587942 0.308184485 LQTVLEAVHDLLRPR ddPTM_HeLa_A485_30min_R1 2 LQTVLEAVHDLLRPR 15 1 Q9HBI1;B0QYP8;A0A087WZB5;Q9HBI1-3;Q9HBI1-2 Q9HBI1 PARVB Beta-parvin 0 0 ; ; 127.75 2.44E-05 39690000 18851.8 16938.1 23784.1 20958.1 24946.6 15759.3 21480.8 17426.2 18867.2 32746.8 FALSE FALSE TRUE 23045.31787 18918.86345 32582.82833 22102.98793 22462.82891 16584.43258 16891.2516 13152.39713 22653.67398 24583.62542 0.937425521 0.769571743 1.325387439 0.899093911 0.913731336 0.674612971 0.687093596 0.535006408 0.921494433 1 14.58541007 -6.038285339 2.727033556 0.730540021 0.991298502 0.238510147 0.180539919 0.350742241 5.207322777 0.062325212 0.066197883 9.16E-07 6.038285339 0.260758482 LQTVLEAVHDLLRPR ddPTM_HeLa_A486_30min_R1 2 LQTVLEAVHDLLRPR 15 1 Q9HBI1;B0QYP8;A0A087WZB5;Q9HBI1-3;Q9HBI1-2 Q9HBI1 PARVB Beta-parvin 0 0 ; ; 125.89 2.85E-05 30232900 13332.6 17091.9 15778.1 6082.6 17633.7 14409.7 17758.6 16579.9 16780.3 16475.1 FALSE FALSE TRUE 12398.05359 15737.4756 21887.80287 14160.6002 15421.91692 12631.97772 13315.21045 12805.01871 18234.82991 12349.62773 1.003921241 1.274327935 1.772345156 1.146641867 1.248775855 1.022863037 1.078187193 1.036874875 1.476548955 1 13.59217993 -5.456615927 24.99995737 1.141953432 1.362091546 0.156639133 0.218426779 341.9203588 129000.3747 0.062111492 0.09212618 3.49E-06 5.456615927 0.220138114 LQVLLTYR ddPTM_HeLa_A485_30min_R1 1 LQVLLTYR 8 0 A6NKB8;Q9H4A4;A0A087WU27;A0A087WUS4 A6NKB8 RNPEP Aminopeptidase B 0 0 143.28 0.00047481 0 41283 49833 49959 37358 62666 41979 56582 61165 40060 58834 FALSE FALSE TRUE 50466.26093 55660.53586 68440.91307 39398.77294 56426.75301 44176.95553 44492.79347 46164.18785 48099.67455 44167.76656 1.142603868 1.260207165 1.54956699 0.892025475 1.277555045 1.000208047 1.007358917 1.045200866 1.089022115 1 15.43070626 -5.272113443 24.99990938 1.052684766 1.311734135 0.47379513 0.13159141 617.4220918 1446074.047 0.036448369 0.054683692 5.34E-06 5.272113443 0.259049368 LQVLLTYR ddPTM_HeLa_A486_30min_R1 2 LQVLLTYR 8 0 A6NKB8;Q9H4A4;A0A087WU27;A0A087WUS4 A6NKB8 RNPEP Aminopeptidase B 0 0 ; ; 156.75 2.17E-05 29727000 79058 80067 72442 30088 93091 75482 86726 81495 67384 80801 FALSE FALSE TRUE 73516.44246 73722.19932 100493.4825 70046.38456 81414.65874 66169.79828 65026.23751 62940.36752 73224.89937 60567.90367 1.213785487 1.217182614 1.659187067 1.156493461 1.344188156 1.092489491 1.073608852 1.039170315 1.208971996 1 15.88626586 -6.266192837 22.73581555 1.084718771 1.322520764 0.422370228 0.137540118 116.6726042 558041.6367 0.047494566 0.043337058 5.42E-07 6.266192837 0.237801993 LQVPGGDS(ph)DEDSKTPSASPR ddPTM_HeLa_A486_30min_R1 1 LQVPGGDSDEDSKTPSASPR 20 1 A6NGQ3;Q5VST9;Q5VST9-2;Q5VST9-6;Q5VST9-3 A6NGQ3 OBSCN Obscurin 1 0 LQVPGGDS(1)DEDSKTPSASPR 131.04 2.11E-07 135640000 147010 116700 76772 69769 137280 136020 156930 172690 104840 266480 TRUE FALSE FALSE 136705.3582 107452.267 106500.1744 162425.7579 120061.0623 119239.2354 117664.4542 133372.2568 113927.6156 199751.6735 0.684376535 0.537929245 0.533162864 0.813138409 0.601051597 0.596937354 0.589053659 0.66769031 0.570346238 1 17.60784806 -10.96923514 2.561204436 1.315961255 0.621177119 0.674227657 0.078925152 31202397 15850667.45 58495901.52 0.019497549 1.07E-11 10.96923514 -0.694784137 LQWDGSSDLS(ph)PSDSGSSK ddPTM_HeLa_A485_30min_R1 1 LQWDGSSDLSPSDSGSSK 18 0 K7EKG9;Q14CW9;Q14CW9-2;K7EJK2;K7ENU1 K7EKG9 ATXN7L3 Ataxin-7-like protein 3 1 0 LQWDGSSDLS(1)PSDSGSSK 228.01 9.76E-35 236010000 744940 709840 609200 946740 971990 851600 1178500 1236400 722370 1267600 TRUE FALSE FALSE 910649.333 792849.6132 834568.4309 998458.0089 875215.2627 896188.4592 926703.8475 933170.9614 867343.033 951610.6484 0.956955804 0.833165974 0.877006192 1.049229546 0.919719913 0.941759595 0.97382669 0.980622656 0.911447381 1 19.86001189 -5.189892889 24.9984523 0.964406685 0.883454746 0.369141468 0.047011648 155.3744539 54287.25604 0.012228524 0.021180424 6.46E-06 5.189892889 -0.08095194 LQWVTIT(ph)S(ph)PQAIMMS(ph)ICLQS(ph)MVDELMVK ddPTM_HeLa_A486_30min_R1 1 LQWVTITSPQAIMMSICLQSMVDELMVK 28 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 4 0 LQWVT(0.699)IT(0.727)S(0.727)PQAIMMS(0.932)ICLQS(0.915)MVDELMVK 44.534 0.019311 439570000 43510 47393 29184 8943.9 35940 40730 49010 45672 40125 42588 TRUE FALSE FALSE 40460.17369 43637.40608 40484.82637 20821.8512 31432.07007 35705.14671 36747.17963 35273.48261 43603.06731 31923.6876 1.267402883 1.36692874 1.268175121 0.652238283 0.984600228 1.11845308 1.15109445 1.10493133 1.365853089 1 14.96233969 -5.025573585 24.99625399 1.054269375 1.317262489 0.310813307 0.169566022 880.7523589 860869.737 0.048547526 0.084526718 9.43E-06 5.025573585 0.262993114 LQYFMEQFYGIIR ddPTM_HeLa_A485_30min_R1 1 LQYFMEQFYGIIR 13 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 160.15 4.15E-06 5279200 3533.3 2565.4 3739.7 3929.5 4268.8 2041.5 2862 3319.9 3402.6 5390 FALSE FALSE TRUE 4319.270395 2865.401214 5123.170652 4144.158635 3843.783283 2148.389783 2250.51032 2505.68932 4085.47061 4046.372196 1.067442684 0.708140793 1.266114535 1.024166447 0.949933199 0.530942207 0.556179761 0.619243411 1.009662585 1 11.98241331 -6.096008922 6.388286594 0.708535948 1.009400465 0.293994254 0.199700477 0.285648542 15.95235678 0.066253944 0.066530497 8.02E-07 6.096008922 0.300864517 LQYFMEQFYGIIR ddPTM_HeLa_A486_30min_R1 2 LQYFMEQFYGIIR 13 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ; ; 137.16 0.00022533 27194400 35224.9 44333.2 39760 13237.22 45178.2 40057.5 41246.7 43078.7 40448.2 39837 FALSE FALSE TRUE 32755.81641 40820.07577 55156.13681 30816.91713 39511.52889 35115.61292 30926.3394 33270.62041 43954.28254 29861.5559 1.096922629 1.366977525 1.84706172 1.031993016 1.323157072 1.175947196 1.035657335 1.11416232 1.471935444 1 14.86600172 LRAPS(ph)SR ddPTM_HeLa_A485_30min_R1 5 LRAPSSR 7 1 Q6EEV4-2;Q6EEV4 Q6EEV4-2 POLR2M "DNA-directed RNA polymerase II subunit GRINL1A, isoforms 4/5" 1 0 LRAPS(0.748)S(0.252)R;LRAPS(0.735)S(0.265)R;LRAPS(0.735)S(0.265)R;LRAPS(0.965)S(0.035)R;LRAPS(0.836)S(0.164)R ;;;; 69.276 0.0058272 316965000 146435 226828 247890 119689 194532 188725 206791 231615 197183 173928 TRUE FALSE FALSE 179008.9606 253353.5615 339594.8266 126227.307 175163.711 198606.3492 162608.4135 174811.0581 236755.8194 130570.9505 1.370970801 1.940351667 2.600845175 0.966733462 1.341521298 1.52106076 1.245364401 1.338820445 1.813235015 1 16.99447444 -5.276797423 24.99963378 1.33862389 1.967685533 0.410921555 0.357480139 795.8744417 1295512.907 0.100870173 0.150235553 5.29E-06 5.276797423 0.629061643 LRAPS(ph)SR ddPTM_HeLa_A486_30min_R1 4 LRAPSSR 7 1 Q6EEV4-2;Q6EEV4 Q6EEV4-2 POLR2M "DNA-directed RNA polymerase II subunit GRINL1A, isoforms 4/5" 1 0 LRAPS(0.828)S(0.172)R;LRAPS(0.5)S(0.5)R;LRAPS(0.947)S(0.053)R;LRAPS(0.868)S(0.132)R ;;; 66.299 0.0068717 110723000 126653 153911 152496 35020.2 158450 98283.2 119331 131098 116170 115482 TRUE FALSE FALSE 117775.2787 141714.5318 211546.5352 81528.79542 138575.7235 86158.01805 89473.12165 101249.8472 126239.7091 86564.55554 1.360548529 1.637096511 2.443800859 0.941826535 1.60083677 0.99530365 1.033599966 1.169645551 1.458330241 1 16.4014888 -5.289157825 24.99996526 1.183250576 1.796143717 0.455380144 0.321608033 654.5760445 590377.1687 0.090289326 0.133954706 5.14E-06 5.289157825 0.612893141 LRCDS(ph)ADLR ddPTM_HeLa_A485_30min_R1 2 LRCDSADLR 9 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 LRCDS(1)ADLR;LRCDS(1)ADLR ; 142.97 5.52E-05 909870000 784760 967570 1143430 875200 1310590 931120 1121270 1052770 1010570 1141870 TRUE FALSE FALSE 959327.1546 1080718.895 1566432.339 923009.9599 1180103.058 979872.0034 881701.5046 794576.5068 1213382.13 857222.8236 1.119110607 1.260721093 1.827333916 1.076744499 1.376658467 1.143077362 1.028555797 0.926919448 1.415480428 1 19.70931074 -6.362308166 3.919248771 1.086225277 1.341981686 0.205990858 0.225560496 0.381852497 10.53217624 0.082938969 0.072607475 4.34E-07 6.362308166 0.255756409 LRCDS(ph)ADLR ddPTM_HeLa_A486_30min_R1 3 LRCDSADLR 9 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 LRCDS(1)ADLR;LRCDS(1)ADLR;LRCDS(1)ADLR ;; 142.47 5.66E-05 1047750000 957440 1320960 1145420 406682 1458800 1119420 1247060 1349550 1064070 1219180 TRUE FALSE FALSE 890328.4002 1216282.319 1588957.299 946776.2486 1275823.701 981317.3418 935032.3979 1042286.925 1156304.444 913889.3925 0.974218989 1.330885694 1.738675722 1.035985598 1.396037323 1.073781302 1.023135191 1.140495703 1.265256446 1 19.80166004 -6.27186137 24.47726782 1.104477291 1.307386499 0.181022554 0.206083036 959.2003185 2252786.727 0.073034486 0.065111712 5.35E-07 6.27186137 0.202909208 LRDLEDSLAR ddPTM_HeLa_A485_30min_R1 5 LRDLEDSLAR 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;;; ;;;; 234.39 1.29E-20 1140326000 455758 747500 735618 471969 972602 796024 903976 1200433 686330 683352 FALSE FALSE TRUE 557139.7948 834913.6226 1007753.71 497751.4714 875766.3299 837702.5858 710834.1428 906024.9245 824070.1356 513004.9226 1.086032064 1.627496318 1.964413333 0.970266462 1.707130461 1.632932841 1.385628308 1.76611351 1.606359119 1 18.96861314 -10.20768029 5.399105199 0.999971621 1.538032308 0.230126096 0.288787764 9.52E-05 1.40E-05 0.269900946 0.06545715 6.20E-11 10.20768029 0.538060687 LRDLEDSLAR ddPTM_HeLa_A486_30min_R1 4 LRDLEDSLAR 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 221.32 7.16E-17 991670000 523635 573681 560323 211478 911470 564895 660047 724694 491673 657602 FALSE FALSE TRUE 486930.8906 528220.4282 777295.0716 492331.4715 797144.9335 495203.9983 494896.2593 559696.9962 534291.6115 492934.1789 0.987821318 1.0715841 1.576873962 0.998777306 1.61714275 1.004604711 1.003980411 1.135439619 1.083900517 1 18.91103549 LRDYIWNTLNSGR ddPTM_HeLa_A485_30min_R1 1 LRDYIWNTLNSGR 13 1 H0YIC4;A0A0C4DGI3;B4DJV2;O75390 H0YIC4 CS "Citrate synthase;Citrate synthase, mitochondrial" 0 0 108.36 0.0011921 10685000 19792 45722 61938 7886.4 29434 57029 21624 43596 40906 10773 FALSE FALSE TRUE 24194.66212 51068.79017 84851.44366 8317.214063 26503.44761 60014.95026 17003.85575 32904.01264 49115.45899 8087.489362 2.991615943 6.314541866 10.49169153 1.028404946 3.277092114 7.420714584 2.102488793 4.068507688 6.073016827 1 12.98147619 -5.27693319 24.992701 3.782478469 6.570809605 0.225414683 2.553813969 1282.958835 2069507.828 0.722136585 1.075372798 5.29E-06 5.27693319 2.788331136 LRDYIWNTLNSGR ddPTM_HeLa_A486_30min_R1 1 LRDYIWNTLNSGR 13 1 H0YIC4;A0A0C4DGI3;B4DJV2;O75390 H0YIC4 CS "Citrate synthase;Citrate synthase, mitochondrial" 0 0 98.682 0.0028853 11225000 21498 67619 133710 3880.4 124430 30819 15356 28800 56762 15200 FALSE FALSE TRUE 19991.10122 62260.62418 185486.0929 9033.767305 108822.8291 27016.86512 11513.76638 22242.8687 61682.17586 11393.82106 1.75455636 5.464420042 16.2795336 0.792865471 9.551038982 2.37118566 1.010527225 1.952186942 5.413651444 1 13.47596403 -6.289567341 21.02678733 2.325328207 6.892446413 0.218822962 4.171233275 161.5369833 120753.5154 1.460770236 1.288966154 5.13E-07 6.289567341 4.567118205 LRECLPLIIFLR ddPTM_HeLa_A485_30min_R1 3 LRECLPLIIFLR 12 1 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 ;; ;; 251.3 2.96E-39 187745000 108744 116150 128108 111387 146305 131394 173633 180065 85334 169081 FALSE FALSE TRUE 132933.7276 129732.7321 175500.4802 117471.7898 131738.3605 138273.5867 136534.8911 135903.7764 102459.7511 126932.2184 1.047281213 1.022063065 1.382631474 0.925468658 1.037863847 1.089349799 1.075651972 1.070679912 0.807200507 1 16.95369878 -7.681398502 8.369447067 0.904579535 1.083440753 0.264898124 0.118491699 0.313162358 28.55739647 0.079578569 0.029719039 2.08E-08 7.681398502 0.178861218 LRECLPLIIFLR ddPTM_HeLa_A486_30min_R1 3 LRECLPLIIFLR 12 1 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 ;; ;; 232.25 3.59E-29 120468000 47343.8 80328.1 77806.9 32959 119706 67348.1 85964.8 87049 69624.7 88695 FALSE FALSE TRUE 44025.2441 73962.60881 107935.8154 76730.21766 104691.3573 59039.37617 64455.4978 67229.84297 75659.82506 66485.19469 0.662181171 1.112467357 1.623456409 1.154094803 1.5746567 0.888007871 0.969471445 1.011200212 1.137995089 1 16.02074549 -6.324934728 24.99971044 1.000043459 1.237260351 0.161279132 0.25472179 413.1323927 162659.1364 0.092483976 0.081563209 4.73E-07 6.324934728 0.237216892 LREDLER ddPTM_HeLa_A485_30min_R1 5 LREDLER 7 1 P62269;J3JS69 P62269 RPS18 40S ribosomal protein S18 0 0 ;;;; ;;;; 171.73 0.00051954 1490983000 457982 602992 643560 449818 720350 577694 650963 704083 565193 618043 FALSE FALSE TRUE 559858.5159 673506.6691 881639.6248 474390.4183 648629.4247 607941.1646 511879.4372 531405.5403 678622.0508 463976.2543 1.206653381 1.451597281 1.900182642 1.022445468 1.397979786 1.310285082 1.103244902 1.145329174 1.462622375 1 18.82369145 -5.288304056 24.99987494 1.220106654 1.512689945 0.311441349 0.212812489 922.1084555 858098.6615 0.05963018 0.088474677 5.15E-06 5.288304056 0.292583291 LREDLER ddPTM_HeLa_A486_30min_R1 4 LREDLER 7 1 P62269;J3JS69 P62269 RPS18 40S ribosomal protein S18 0 0 ;;; ;;; 184.38 0.00055314 1056930000 561519 611980 549685 183895 811820 522784 635240 647260 486418 597490 FALSE FALSE TRUE 522159.4178 563484.476 762537.7531 428116.8535 709993.9657 458288.2254 476296.2331 499893.0276 528581.1039 447874.615 1.165860713 1.25812997 1.702569709 0.955885507 1.585251635 1.023251173 1.063458873 1.116145034 1.180198846 1 18.77273537 -6.299622302 24.97110268 1.083047817 1.328871143 0.29299207 0.199365671 738.1159695 482715.3146 0.067258729 0.059317681 5.02E-07 6.299622302 0.245823326 LREQGTES(ph)R ddPTM_HeLa_A485_30min_R1 7 LREQGTESR 9 1 G5E972;P42167;H0YJH7;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 LREQGTES(1)R;LREQGTES(1)R;LREQGT(0.001)ES(0.999)R;LREQGT(0.009)ES(0.991)R;LREQGT(0.009)ES(0.991)R;LREQGT(0.001)ES(0.999)R;LREQGT(0.061)ES(0.939)R ;;;;;; 145.09 4.91E-05 4508548000 1082592 1181894 973981 813611 1127683 1115527 1334834 2095304 1182215 1647203 TRUE FALSE FALSE 1323410.856 1320106.222 1334297.103 858056.5088 1015406.921 1173934.269 1049635.811 1581427.409 1419474.707 1236585.607 1.070213698 1.067541313 1.079017171 0.693891716 0.821137587 0.94933522 0.848817749 1.278866097 1.147898454 1 20.23793069 -7.255801167 24.97866688 1.160036708 0.930799475 0.342115393 0.132362483 509.192981 2255860.962 0.069135739 0.038497338 5.55E-08 7.255801167 -0.229237234 LREQGTES(ph)R ddPTM_HeLa_A486_30min_R1 5 LREQGTESR 9 1 G5E972;P42167;H0YJH7;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 LREQGTES(1)R;LREQGT(0.001)ES(0.999)R;LREQGT(0.002)ES(0.998)R;LREQGT(0.003)ES(0.997)R;LREQGT(0.011)ES(0.989)R ;;;; 140.14 6.63E-05 3800126000 653212 625737 789919 285843.4 783726 694898 790012 657012 636397 592903 TRUE FALSE FALSE 607425.212 576151.3212 1095796.792 665457.8809 685423.7771 609168.55 592342.6417 507424.7101 691560.4044 444436.2296 1.366731989 1.296364434 2.465588353 1.497307907 1.542232004 1.370654572 1.332795578 1.141726701 1.556039671 1 18.7616169 -6.179195656 1.695602344 1.271992804 1.684287706 0.238690666 0.326590961 0.579169035 3.305497395 0.138519531 0.134086731 6.62E-07 6.179195656 0.412294902 LREQLQLLEEQHR ddPTM_HeLa_A485_30min_R1 3 LREQLQLLEEQHR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;; ;; 151.99 1.71E-07 260168000 175173.3 230755.3 210588.4 164519.7 275349.8 240201.1 275253.3 342240.1 203755.3 233157 FALSE FALSE TRUE 214139.9962 257740.125 288493.8125 173506.9946 247935.0071 252777.6582 216443.1838 258305.1789 244647.1198 175035.2508 1.223410686 1.472504103 1.648204068 0.991268866 1.416486142 1.44415286 1.236569107 1.475732332 1.397701998 1 17.41728597 -10.11686487 5.274287801 0.999991852 1.370676705 0.2947924 0.170375172 1.60E-05 2.68E-06 0.16174325 0.039227638 7.64E-11 10.11686487 0.370684853 LREQLQLLEEQHR ddPTM_HeLa_A486_30min_R1 1 LREQLQLLEEQHR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 140.82 4.26E-06 135470000 78930 78798 68814 28827 100550 66471 83357 85241 65181 86770 FALSE FALSE TRUE 73397.41459 72553.7595 95460.6237 67110.71284 87938.08141 58270.48385 62500.19694 65833.4851 70830.94156 65042.22722 1.128457892 1.115487009 1.467671508 1.031802195 1.352015224 0.89588697 0.960917232 1.012165295 1.088999325 1 15.98908904 -6.267761406 24.99926809 0.990436811 1.21673679 0.457139477 0.123936771 477.862222 1889611.786 0.042019679 0.037975412 5.40E-07 6.267761406 0.226299978 LREQYGLGPYEAVT(ph)PLTK ddPTM_HeLa_A485_30min_R1 2 LREQYGLGPYEAVTPLTK 18 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LREQYGLGPYEAVT(0.999)PLT(0.001)K;LREQYGLGPYEAVT(1)PLTK ; 139.47 1.83E-06 496780000 429530 466520 396260 400250 638260 543200 804890 889970 421750 606440 TRUE FALSE FALSE 525077.4666 521075.4558 542853.0638 422114.644 574712.5933 571641.1121 632918.6762 671703.4621 506391.3565 455265.6687 1.153342988 1.144552492 1.192387437 0.927183122 1.26236752 1.255620951 1.390218327 1.475409872 1.112298579 1 18.79634915 -5.964926543 24.98955052 1.282458997 1.111180403 0.179308816 0.142000355 250.7764374 178675.0897 0.04311163 0.048883804 1.08E-06 5.964926543 -0.171278593 LREQYGLGPYEAVT(ph)PLTK ddPTM_HeLa_A486_30min_R1 2 LREQYGLGPYEAVTPLTK 18 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LREQYGLGPY(0.002)EAVT(0.997)PLT(0.001)K;LREQYGLGPYEAVT(0.999)PLT(0.001)K ; 145.81 4.51E-10 196600000 290620 287750 189974 121699 345730 323410 381400 389430 241990 382600 TRUE FALSE FALSE 270249.0388 264947.642 263537.0205 283321.4223 302365.3196 283510.9624 285969.686 300765.2902 262965.888 286794.4697 0.9423091 0.923824097 0.918905517 0.987890117 1.054292713 0.988551009 0.99712413 1.048713703 0.916914082 1 18.12965768 -5.34416262 4.767445433 1.003844289 0.927975248 0.451060993 0.035772842 0.183532747 7.376205047 0.009829965 0.014953459 4.53E-06 5.34416262 -0.075869041 LRESEQAR ddPTM_HeLa_A485_30min_R1 1 LRESEQAR 8 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0;Q5VY93 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 0 0 75.109 0.016569 45465000 24408 34679 31856 19044 32921 29294 27193 39633 31439 30927 FALSE FALSE TRUE 29837.47539 38734.40738 43640.86004 20084.3255 29643.26965 30827.78854 21382.9934 29912.94461 37748.51892 23217.46807 1.285130459 1.668330382 1.879656296 0.865052358 1.27676582 1.327784255 0.920987307 1.288380995 1.625867162 1 14.50292303 -5.255669165 24.99965485 1.197018003 1.616768165 0.37760079 0.249535789 519.9892047 2252865.674 0.068650182 0.114920166 5.55E-06 5.255669165 0.419750163 LRESTPGDS(ph)PSTVNK ddPTM_HeLa_A485_30min_R1 2 LRESTPGDSPSTVNK 15 1 Q5T6F2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 LRESTPGDS(0.999)PSTVNK;LRESTPGDS(0.999)PS(0.001)TVNK ; 132.13 7.61E-06 1307670000 602510 609150 398240 656110 859300 711380 875560 1077580 512650 878070 TRUE FALSE FALSE 736536.2709 680384.7936 545565.5481 691951.6279 773745.0748 748626.7568 688489.4533 813301.8154 615534.1527 659183.3087 1.117346664 1.032163261 0.827638596 1.049710481 1.173793488 1.135688278 1.044458263 1.233802198 0.933782977 1 19.33032019 -5.519004187 24.98804559 1.100092204 0.986746492 0.132498023 0.104777897 260.8224217 1682119.516 0.030022723 0.039678759 3.03E-06 5.519004187 -0.113345712 LRESTPGDS(ph)PSTVNK ddPTM_HeLa_A486_30min_R1 3 LRESTPGDSPSTVNK 15 1 Q5T6F2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 LRESTPGDS(0.999)PS(0.001)TVNK;LRESTPGDS(0.999)PS(0.001)TVNK;LRESTPGDS(0.999)PS(0.001)TVNK ;; 133.24 6.71E-06 1710010000 1793970 1585220 1050680 689880 1805440 1745000 2128380 2108410 1339630 2163850 TRUE FALSE FALSE 1668221.967 1459601.394 1457531.434 1606075.505 1578984.88 1529719.642 1595836.812 1628371.069 1455750.207 1622007.876 1.028491903 0.899873185 0.898597014 0.990177377 0.973475471 0.943102475 0.983865021 1.003923035 0.897498852 1 20.62934939 -5.285927109 24.85493985 0.970020527 0.938075929 0.074143947 0.044536629 1689.631591 1714964.578 0.012295801 0.018245558 5.18E-06 5.285927109 -0.031944598 LREVIEIEDAS(ph)PTKCPITTK ddPTM_HeLa_A485_30min_R1 4 LREVIEIEDASPTKCPITTK 20 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LREVIEIEDAS(0.999)PT(0.001)KCPITTK;LREVIEIEDAS(0.989)PT(0.011)KCPITTK;LREVIEIEDAS(0.998)PT(0.002)KCPITTK;LREVIEIEDAS(0.994)PT(0.006)KCPITTK ;;; 249.41 4.07E-47 3511310000 1094160 965370 648860 1541060 1585690 1345580 2211420 2410240 1118090 2331490 TRUE FALSE FALSE 1337552.117 1078261.624 888900.3153 1625244.206 1427813.136 1416032.488 1738932.051 1819124.861 1342480.407 1750292.451 0.764187788 0.616046549 0.507858167 0.928555799 0.815756895 0.809026222 0.993509428 1.039326234 0.767003484 1 20.73916457 -5.274244392 24.6778267 0.904881387 0.628032407 0.607938807 0.102373774 425.6728433 820356.1166 0.029563559 0.044180937 5.32E-06 5.274244392 -0.276848981 LREVIEIEDAS(ph)PTKCPITTK ddPTM_HeLa_A486_30min_R1 2 LREVIEIEDASPTKCPITTK 20 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LREVIEIEDAS(0.999)PT(0.001)KCPITTK;LREVIEIEDAS(0.973)PT(0.027)KCPITTK ; 284.59 3.44E-73 2330190000 1606290 1339671 706198 1088718 1637230 1800330 2573530 2382510 1127494 2689940 TRUE FALSE FALSE 1493697.366 1233510.591 979656.7782 2534590.525 1431873.347 1578223.589 1929605.574 1840064.483 1225226.088 2016361.515 0.740788472 0.611750711 0.485853737 1.257011952 0.710127294 0.782708645 0.956974014 0.912566754 0.607642071 1 20.94332289 -5.194453984 24.99997465 0.876818077 0.612692927 0.340760569 0.175789845 220.325691 82228.06813 0.046456205 0.0804645 6.39E-06 5.194453984 -0.26412515 LREVMESAVGNSSGSGQNEES(ph)PR ddPTM_HeLa_A485_30min_R1 2 LREVMESAVGNSSGSGQNEESPR 23 1 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 LREVMESAVGNSSGSGQNEES(1)PR;LREVMESAVGNSSGSGQNEES(1)PR ; 134.91 7.30E-07 585360000 89952 152923 160254 88888 181867 159030 159900 206400 146472 121106 TRUE FALSE FALSE 109961.5121 170806.0146 219538.6233 93743.72636 163759.6829 167356.5649 125736.0587 155780.0764 175867.5869 90916.50299 1.209478021 1.878712984 2.414727977 1.031096922 1.801209654 1.84077213 1.382983887 1.713441138 1.93438574 1 16.47225457 -10.37003421 7.381611809 0.999984412 1.696569707 0.231950006 0.376292552 9.45E-05 8.07E-06 0.356784381 0.086530994 4.27E-11 10.37003421 0.696585295 LREVMESAVGNSSGSGQNEES(ph)PR ddPTM_HeLa_A486_30min_R1 1 LREVMESAVGNSSGSGQNEESPR 23 1 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 LREVMESAVGNSSGSGQNEES(1)PR 169.18 8.71E-15 305800000 58206 72745 59626 17012 81663 63125 70706 65851 57371 72891 TRUE FALSE FALSE 54126.05998 66980.42127 82714.78404 39604.79574 71420.06506 55337.27931 53014.61095 50858.16482 62343.96447 54638.61916 0.990619104 1.225880564 1.513852021 0.724849865 1.307135249 1.012786929 0.970277283 0.930809848 1.141023793 1 15.7376334 -5.257811092 24.99997183 1.020069096 1.241693535 0.251449633 0.182332768 466.2837333 3212820.238 0.049029931 0.080894715 5.52E-06 5.257811092 0.221624438 LRFTYR ddPTM_HeLa_A485_30min_R1 1 LRFTYR 6 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 74.439 0.036645 24155000 8710.5 12048 12703 10603 13857 13615 16828 21091 11125 17622 FALSE FALSE TRUE 10648.12067 13456.9088 17402.36832 11182.21504 12477.34843 14327.86035 13232.56033 15918.39918 13357.68546 13229.15971 0.804897734 1.017215688 1.315455305 0.845270243 0.943170141 1.083051431 1.000257055 1.203281201 1.009715337 1 13.69143381 -6.284593295 23.74132524 1.068278342 0.9975538 0.060179704 0.139955227 1490.595278 1528403.831 0.05075609 0.04479889 5.19E-07 6.284593295 -0.070724542 LRFTYR ddPTM_HeLa_A486_30min_R1 2 LRFTYR 6 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 110.61 0.0091139 30909000 14476.4 14027.9 13140.7 3356.3 15906.5 11953.8 14384.2 14422.7 9321.7 17116.1 FALSE FALSE TRUE 13461.67912 12916.27812 18229.13096 7813.636018 13911.35845 10479.06169 10785.12102 11138.96606 10129.71246 12830.11715 1.049224957 1.006715524 1.420807834 0.609007379 1.084273688 0.81675495 0.840609707 0.868188959 0.789526108 1 13.64724672 -5.264670956 24.99999095 0.859787911 1.143696039 0.435861146 0.156413103 264.4592583 2045901.815 0.041613115 0.064720921 5.44E-06 5.264670956 0.283908128 LRGTQEVAPPTPLTPTSHT(ph)ANTSPRPVSGMER ddPTM_HeLa_A485_30min_R1 2 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 LRGTQEVAPPTPLTPT(0.028)S(0.106)HT(0.329)ANT(0.268)S(0.268)PRPVS(0.002)GMER;LRGTQEVAPPTPLTPT(0.012)S(0.012)HT(0.379)ANT(0.299)S(0.299)PRPVSGMER ; 131.04 2.21E-06 2394820000 170207 320299 254154 204273 284712 303125 382800 524660 256297 284197 TRUE FALSE FALSE 208068.9599 357755.1818 348176.1408 215431.9167 256365.0736 318996.1563 301011.6528 395986.3124 307733.457 213351.9182 0.975238291 1.676831335 1.631933492 1.009749144 1.201606603 1.495164229 1.410869213 1.856024149 1.442374925 1 17.70287556 -6.295954739 21.58978095 1.492512186 1.322477272 0.039216523 0.289518401 360.7857592 225672.845 0.103076393 0.090916755 5.06E-07 6.295954739 -0.170034914 LRGTQEVAPPTPLTPTSHT(ph)ANTSPRPVSGMER ddPTM_HeLa_A486_30min_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 LRGTQEVAPPTPLTPT(0.096)S(0.096)HT(0.35)ANT(0.229)S(0.229)PRPVSGMER 168.31 1.88E-14 643040000 229770 232550 196900 42489 261500 182970 249660 220960 181050 176270 TRUE FALSE FALSE 213664.3095 214121.8911 273144.9532 98916.53928 228700.2316 160397.0217 187192.4274 170652.2315 196743.5598 132130.8447 1.617066099 1.620529193 2.067230811 0.748625648 1.7308618 1.213925651 1.416720129 1.2915397 1.48900554 1 17.01160776 -1 0.098146137 0.850238372 3.300821093 0.222227003 0.316197058 206.7465805 1.445103441 4.215110881 68.20140235 0.1 1 2.450582721 LRGTQEVAPPTPLTPTSHTANT(ph)SPRPVSGMER ddPTM_HeLa_A486_30min_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 LRGTQEVAPPTPLTPTSHT(0.003)ANT(0.498)S(0.498)PRPVSGMER 154.48 4.76E-10 695750000 245240 245870 219340 35189 309220 180620 235580 267160 197240 233970 TRUE FALSE FALSE 228049.9424 226386.3658 304274.3221 81921.77035 270434.7442 158336.9408 176635.3923 206333.5001 214336.922 175382.3891 1.300301265 1.290815839 1.734919473 0.467103743 1.541972062 0.902809807 1.007144407 1.176477873 1.222111998 1 17.42014436 -5.222747356 24.99999792 1.065885366 1.426892402 0.293732117 0.280293399 734.613954 474653.8154 0.071934272 0.124591533 5.99E-06 5.222747356 0.361007036 LRKGS(ph)DALRPPVPQGEDEVPK ddPTM_HeLa_A485_30min_R1 2 LRKGSDALRPPVPQGEDEVPK 21 3 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 LRKGS(1)DALRPPVPQGEDEVPK;LRKGS(1)DALRPPVPQGEDEVPK ; 165.24 8.74E-13 793490000 409660 378080 220938 429900 356240 558490 826770 901210 362240 816020 TRUE FALSE FALSE 500787.4537 422293.1671 302672.1602 453384.3484 320771.4948 587731.6728 650123.8354 680186.8345 434938.2453 612601.2317 0.81747706 0.6893443 0.49407697 0.740097024 0.523622021 0.959403348 1.06125127 1.110325607 0.709985914 1 19.22458874 -6.311010533 8.863899861 0.981526744 0.651088486 0.585270555 0.132460152 0.293744513 50.32184834 0.046094114 0.040714885 4.89E-07 6.311010533 -0.330438258 LRKGS(ph)DALRPPVPQGEDEVPK ddPTM_HeLa_A486_30min_R1 2 LRKGSDALRPPVPQGEDEVPK 21 3 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 LRKGS(1)DALRPPVPQGEDEVPK;LRKGS(1)DALRPPVPQGEDEVPK ; 170.82 5.04E-13 928330000 565080 394110 197371 248536 423660 473940 618540 612600 325020 885650 TRUE FALSE FALSE 525470.8101 362879.2883 273798.337 578604.3683 370520.6123 415470.1015 463774.7498 473124.353 353192.9953 663877.4754 0.791517757 0.546605815 0.412422995 0.871552944 0.558115957 0.625823464 0.698584855 0.712668181 0.532015332 1 19.34055748 -11.02033808 2.429373958 1.406189415 0.637461648 0.416638917 0.128207404 21871445.27 8978177.016 49526707.27 0.032011129 9.54E-12 11.02033808 -0.768727767 LRLANVSER ddPTM_HeLa_A486_30min_R1 1 LRLANVSER 9 1 I6LM06;P22607-2 I6LM06 FGFR3 0 0 95.502 0.0099473 80392000 22448 40159 43247 13929 64045 38267 46316 47524 33420 35223 FALSE FALSE TRUE 20874.51112 36976.65458 59993.39659 32427.41593 56011.8789 33546.00661 34727.24692 36703.82264 36316.87251 26402.93154 0.790613387 1.400475342 2.272224829 1.228174829 2.12142651 1.270540984 1.315279967 1.390141947 1.375486372 1 14.6884105 LRLCDDGPQLPT(ph)SPR ddPTM_HeLa_A486_30min_R1 3 LRLCDDGPQLPTSPR 15 1 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LRLCDDGPQLPT(0.624)S(0.376)PR;LRLCDDGPQLPT(0.628)S(0.372)PR;LRLCDDGPQLPT(0.881)S(0.119)PR ;; 108.71 0.00030722 5711720000 1390600 1701070 1683520 561001 2429260 1357670 1794480 1998000 1157710 1595760 TRUE FALSE FALSE 1293126.121 1566271.018 2335424.03 1306038.679 2124559.559 1190174.479 1345482.124 1543099.016 1258061.235 1196171.309 1.081054286 1.309403599 1.952416023 1.091849194 1.776133186 0.994986646 1.124823939 1.290031791 1.051740018 1 20.18999259 -6.288356351 24.96422345 1.11247517 1.443679945 0.301413313 0.265418892 1001.269941 928627.2985 0.091611849 0.080814422 5.15E-07 6.288356351 0.331204775 LRLCDDGPQLPTS(ph)PR ddPTM_HeLa_A485_30min_R1 3 LRLCDDGPQLPTSPR 15 1 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LRLCDDGPQLPT(0.099)S(0.901)PR;LRLCDDGPQLPT(0.008)S(0.992)PR;LRLCDDGPQLPT(0.232)S(0.768)PR ;; 126.4 1.23E-05 9079420000 1794030 2921870 3019070 1627279 3537440 2895940 3469690 4581540 2344430 2155730 TRUE FALSE FALSE 2193105.784 3263557.28 4135949.627 1716173.131 3185240.053 3047566.94 2728362.387 3457910.131 2814935.597 1618346.184 1.355152442 2.016600225 2.555664336 1.060448715 1.968206855 1.883136606 1.685895399 2.136693722 1.739390264 1 20.62608882 -8.037118208 22.78748077 0.999999992 1.844732209 0.288545885 0.389479602 2532.680427 1554853.259 0.365556283 0.094386226 9.18E-09 8.037118208 0.844732218 LRLCDDGPQLPTS(ph)PR ddPTM_HeLa_A486_30min_R1 3 LRLCDDGPQLPTSPR 15 1 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LRLCDDGPQLPT(0.072)S(0.928)PR;LRLCDDGPQLPT(0.024)S(0.976)PR;LRLCDDGPQLPT(0.076)S(0.924)PR ;; 108.14 0.00011729 3866810000 1780610 2327730 2321860 851620 3261360 1868170 2350230 2715970 1699540 2210240 TRUE FALSE FALSE 1655798.434 2143272.197 3220946.374 1982614.398 2852289.818 1637694.18 1762177.596 2097602.92 1846857.496 1656781.518 0.99940663 1.293635989 1.944098446 1.196666173 1.721584764 0.988479267 1.063614953 1.266070932 1.114726037 1 20.65995193 -6.280636848 24.99591728 1.101772456 1.438920945 0.309111628 0.256881668 1099.678875 1431823.875 0.091015463 0.080386998 5.24E-07 6.280636848 0.337148489 LRLDTGPQSLS(ph)GK ddPTM_HeLa_A485_30min_R1 2 LRLDTGPQSLSGK 13 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 LRLDTGPQS(0.019)LS(0.981)GK;LRLDTGPQS(0.067)LS(0.933)GK ; 137.73 3.44E-06 987890000 752700 724080 649710 1048380 1046800 941830 1402160 1409380 843610 1543490 TRUE FALSE FALSE 920135.5182 808754.8573 890064.7657 1105650.345 942576.9165 991142.7625 1102577.061 1063727.345 1012914.789 1158726.349 0.794092168 0.697968816 0.768140611 0.954194531 0.813459466 0.855372594 0.951542236 0.918014289 0.874162213 1 20.14410846 -1.322418759 0.160266503 1.010452382 3.70E-10 0.587280617 0.0580219 40.29013954 0.457304705 0.180786648 9.425201127 0.047597182 1.322418759 -1.010452382 LRLDTGPQSLS(ph)GK ddPTM_HeLa_A486_30min_R1 2 LRLDTGPQSLSGK 13 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 LRLDTGPQS(0.02)LS(0.98)GK;LRLDTGPQS(0.483)LS(0.517)GK ; 141.13 3.26E-07 586380000 624690 585720 360350 273348 586700 705730 869450 814440 526870 1080670 TRUE FALSE FALSE 580902.4569 539305.414 499887.1705 636367.9582 513110.6152 618664.2079 651904.4139 629009.7911 572539.5158 810063.198 0.717107577 0.665757209 0.617096508 0.785578162 0.633420474 0.763723385 0.804757475 0.776494714 0.706783764 1 19.62767494 -14 0.155708172 2.039944571 0.637858247 0.704670545 0.056703002 71.80187922 0.651041899 22.98996718 0.258717172 1.00E-14 14 -1.402086324 LRLDTGS(ph)PEPETR ddPTM_HeLa_A485_30min_R1 5 LRLDTGSPEPETR 13 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LRLDT(0.023)GS(0.977)PEPETR;LRLDT(0.043)GS(0.957)PEPETR;LRLDT(0.004)GS(0.996)PEPETR;LRLDT(0.002)GS(0.998)PEPETR;LRLDT(0.124)GS(0.876)PEPETR ;;;; 111.73 0.00013852 4382820000 1238260 1823980 1750990 1154545 2170160 1816880 2101480 2437570 1703760 1712610 TRUE FALSE FALSE 1513706.665 2037278.594 2398754.066 1217614.87 1954091.251 1912009.027 1652481.63 1839752.136 2045689.004 1285687.845 1.177351618 1.584582605 1.865735975 0.947053264 1.519880006 1.487148715 1.285289922 1.430947755 1.591124169 1 20.29410898 -10.22107916 3.858106772 0.999579064 1.434940598 0.227903416 0.238559948 36573054.59 70662560.71 185350.3587 0.05840839 6.01E-11 10.22107916 0.435361534 LRLDTGS(ph)PEPETR ddPTM_HeLa_A486_30min_R1 4 LRLDTGSPEPETR 13 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LRLDT(0.016)GS(0.984)PEPETR;LRLDT(0.022)GS(0.978)PEPETR;LRLDT(0.034)GS(0.966)PEPETR;LRLDT(0.001)GS(0.999)PEPETR ;;; 117.07 8.05E-05 3858990000 1461100 1601530 1573870 505820 2027660 1419650 1648130 1704300 1317160 1503600 TRUE FALSE FALSE 1358684.435 1474618.93 2183314.614 1177574.523 1773331.976 1244508.017 1235750.442 1316268.095 1431332.489 1127088.773 1.205481296 1.308343198 1.937127461 1.044793055 1.573373826 1.104179233 1.096409148 1.167847756 1.269937669 1 20.10416972 -6.278769287 23.99395575 1.136211109 1.416534459 0.278186907 0.230239774 686.2887375 950190.7371 0.079642819 0.070432181 5.26E-07 6.278769287 0.28032335 LRLEVNLQAMK ddPTM_HeLa_A485_30min_R1 1 LRLEVNLQAMK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 84.507 0.014826 14345000 9087.6 10970 8479.1 10253 13918 10087 13745 15098 8107.2 15110 FALSE FALSE TRUE 11109.10527 12252.84607 11615.87193 10813.09543 12532.27505 10615.13972 10808.26846 11395.19183 9734.240676 11343.35508 0.97934916 1.080178306 1.024024361 0.95325372 1.104812021 0.935802472 0.952828188 1.00456979 0.858144756 1 13.4695598 -6.302657284 24.99949291 0.950714582 1.026795003 0.331216056 0.055433736 607.9415402 368727.0102 0.018636609 0.016436047 4.98E-07 6.302657284 0.07608042 LRLGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR ddPTM_HeLa_A485_30min_R1 2 LRLGIAVIHGEAQDAESDLVDGRHSPPMVR 30 2 O60256;O60256-2;O60256-3;E7EPA1;C9K0K7;O60256-4;I3L0S1 O60256 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 LRLGIAVIHGEAQDAES(0.001)DLVDGRHS(0.999)PPMVR;LRLGIAVIHGEAQDAESDLVDGRHS(1)PPMVR ; 114.61 3.40E-05 103895000 21597.9 53944 43545 17116 49500 60225 65948 125957 30576 29350 TRUE FALSE FALSE 26402.27834 60252.28155 59654.10756 18051.00374 44571.60619 63378.28787 51857.67105 95065.84826 36712.32274 22033.58515 1.198274278 2.734565489 2.707417207 0.819249506 2.022893955 2.876440101 2.353573906 4.314588281 1.666198328 1 14.42741664 -6.184838824 6.549608705 2.642532324 1.922808917 0.053649198 0.980204711 0.578257012 41.05361061 0.31755097 0.317294247 6.53E-07 6.184838824 -0.719723407 LRLLS(ph)FR ddPTM_HeLa_A485_30min_R1 2 LRLLSFR 7 1 O43149;I3L1Q8 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 LRLLS(1)FR;LRLLS(1)FR ; 77.677 0.007122 321520000 160895 350790 240151 102387 273550 248338 298040 401890 178781 110094 TRUE FALSE FALSE 196685.5377 391811.839 328992.8484 107980.1426 246314.4015 261340.5937 234361.3192 303325.8474 214660.7068 82649.59193 2.379752072 4.740638518 3.980574383 1.306481255 2.980225259 3.162031264 2.83560165 3.670022323 2.597238556 1 16.33472008 LRLLS(ph)FR ddPTM_HeLa_A486_30min_R1 2 LRLLSFR 7 1 O43149;I3L1Q8 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 LRLLS(1)FR;LRLLS(1)FR ; 77.677 0.007122 265100000 236172 201561 169271 66343 233133 128870 193087 193877 125577 231899 TRUE FALSE FALSE 219617.5624 185588.5723 234817.2644 154449.8568 203891.2853 112971.3297 144774.5903 149735.4394 136462.1155 173829.981 1.263404397 1.067644207 1.350844446 0.888511038 1.172935095 0.649895542 0.832851672 0.861390185 0.785032103 1 17.4073174 -5.784251457 1.376430248 0.826889483 1.200459526 0.521621905 0.147322165 0.314237306 1.245322679 0.054121761 0.07421611 1.64E-06 5.784251457 0.373570043 LRLPLDKEPAR ddPTM_HeLa_A485_30min_R1 2 LRLPLDKEPAR 11 2 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 105.17 0.0029396 14051300 20155.6 25854 22393 20944 30111 26344 29890 34010 21689 28570 FALSE FALSE TRUE 24639.14368 28877.4004 30677.10255 22088.11769 27113.04311 27723.3311 23503.75732 25668.99417 26041.78336 21448.02479 1.148783812 1.346389734 1.430299659 1.029843909 1.26412774 1.292582015 1.095847172 1.196799912 1.214180961 1 14.38855717 -14 0.123007903 0.23149708 1.335180047 0.297238562 0.109222156 189.5530442 1.497310797 35.86041694 0.991756532 1.00E-14 14 1.103682967 LRLS(ph)NRPAFMPSEGR ddPTM_HeLa_A486_30min_R1 1 LRLSNRPAFMPSEGR 15 2 P12814-2;P12814;P12814-3;P12814-4;H9KV75 P12814-2 ACTN1 Alpha-actinin-1 1 0 LRLS(1)NRPAFMPSEGR 116.6 5.92E-05 120400000 84473 106650 106630 34843 123410 84940 91340 101350 91370 85468 TRUE FALSE FALSE 78551.87892 98198.66559 147919.9917 81116.26487 107930.767 74460.96641 68485.7659 78274.81745 99290.02517 64066.2565 1.226103775 1.532767341 2.308859605 1.266130867 1.684674163 1.162249372 1.068983419 1.221779166 1.549802198 1 15.96727707 -6.263167527 24.95195135 1.206200302 1.620186956 0.299160463 0.307946714 201.0238386 2902473.639 0.10737202 0.099590622 5.46E-07 6.263167527 0.413986653 LRLS(ph)PS(ph)PTS(ph)QR ddPTM_HeLa_A485_30min_R1 2 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 3 0 LRLS(1)PS(1)PT(0.001)S(0.999)QR;LRLS(0.998)PS(0.998)PT(0.012)S(0.992)QR ; 125.73 8.13E-05 356570000 593840 868660 767910 644240 825400 788220 852060 988690 703370 811760 TRUE FALSE FALSE 725937.6593 970242.2307 1051991.864 679433.1999 743220.2778 829489.9804 670010.4203 746212.2273 844529.9073 609403.1713 1.191227242 1.592118775 1.726265819 1.11491576 1.219587152 1.361151401 1.099453452 1.22449679 1.385831166 1 19.21703748 -5.27564226 24.99340955 1.213374827 1.512095442 0.409368971 0.165882977 756.9638797 1332059.724 0.046279061 0.069012476 5.30E-06 5.27564226 0.298720615 LRLS(ph)PS(ph)PTS(ph)QR ddPTM_HeLa_A486_30min_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 3 0 LRLS(0.973)PS(0.984)PT(0.046)S(0.996)QR 107.74 0.0062347 495130000 371040 403720 311570 112960 369590 313310 320280 305330 329570 373710 TRUE FALSE FALSE 345032.0121 371727.7569 432218.2481 262976.5887 323232.5759 274656.9977 240142.5564 235813.0243 358137.393 280130.5836 1.231682766 1.326980268 1.542917031 0.938764291 1.153863929 0.980460592 0.857252191 0.841796784 1.27846588 1 18.09573997 -5.273255409 24.99168777 0.999382676 1.363172049 0.573834453 0.142030587 509.6482685 1077939.169 0.040467251 0.060566086 5.33E-06 5.273255409 0.363789373 LRLS(ph)PS(ph)PTSQR ddPTM_HeLa_A485_30min_R1 11 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.994)PS(0.442)PT(0.307)S(0.257)QR;LRLS(0.98)PS(0.464)PT(0.098)S(0.458)QR;LRLS(0.996)PS(0.545)PT(0.253)S(0.206)QR;LRLS(0.985)PS(0.798)PT(0.119)S(0.098)QR;LRLS(0.974)PS(0.916)PT(0.097)S(0.014)QR;LRLS(0.993)PS(0.741)PT(0.142)S(0.124)QR;LRLS(0.994)PS(0.421)PT(0.313)S(0.272)QR;LRLS(0.887)PS(0.518)PT(0.316)S(0.279)QR;LRLS(0.945)PS(0.99)PT(0.063)S(0.002)QR;LRLS(0.979)PS(0.48)PT(0.3)S(0.24)QR;LRLS(0.983)PS(0.717)PT(0.163)S(0.136)QR ;;;;;;;;;; 88.075 0.0082188 3.43E+11 3361068 4768651 4959105 3644075 5552869 4483673 5186658 5938379 4291417 4729873 TRUE FALSE FALSE 4108725.981 5326303.253 6793684.305 3843141.59 5000005.865 4718431.185 4078486.147 4481982.239 5152665.029 3550802.708 1.157125957 1.500027935 1.913281267 1.082330365 1.408133956 1.328835076 1.148609619 1.262244796 1.451126816 1 21.75971377 -5.30191412 24.99993344 1.257986082 1.521134399 0.265113005 0.21470619 712.1525286 439871.9645 0.060179784 0.089262317 4.99E-06 5.30191412 0.263148317 LRLS(ph)PS(ph)PTSQR ddPTM_HeLa_A486_30min_R1 8 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.968)PS(0.571)PT(0.447)S(0.014)QR;LRLS(0.972)PS(0.709)PT(0.179)S(0.141)QR;LRLS(0.999)PS(0.492)PT(0.327)S(0.182)QR;LRLS(0.903)PS(0.646)PT(0.399)S(0.051)QR;LRLS(1)PS(0.925)PT(0.04)S(0.036)QR;LRLS(0.886)PS(0.505)PT(0.332)S(0.277)QR;LRLS(0.989)PS(0.957)PT(0.053)S(0.001)QR;LRLS(0.922)PS(0.939)PT(0.136)S(0.003)QR ;;;;;;; 90.412 0.0034428 3.21E+11 3520359 3837157 3490082 1241649 4312974 3392042 3784619 3884125 3058423 3651581 TRUE FALSE FALSE 3273600.013 3533086.705 4841535.218 2890621.621 3772000.584 2973566.346 2837667.297 2999794.527 3323529.568 2737201.35 1.195966096 1.290766098 1.768790308 1.05605005 1.378050096 1.086352798 1.036703893 1.095934915 1.214207193 1 21.38427013 -6.029315092 1.451859838 1.087368561 1.375244509 0.312544909 0.180381756 0.499573773 2.153058963 0.074851959 0.081757415 9.35E-07 6.029315092 0.287875948 LRLS(ph)PSPT(ph)SQR ddPTM_HeLa_A485_30min_R1 2 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.509)PS(0.501)PT(0.604)S(0.386)QR;LRLS(0.944)PS(0.164)PT(0.634)S(0.258)QR ; 139.73 0.00012558 25167700000 1232520 1698420 1790410 1331820 1953440 1636120 1733810 1988890 1524400 1581940 TRUE FALSE FALSE 1506689.822 1897035.445 2452757.164 1404573.954 1758948.655 1721784.713 1363367.33 1501111.609 1830333.097 1187591.471 1.268693703 1.597380488 2.065320628 1.182708017 1.481105832 1.449812292 1.148010374 1.263996623 1.541214417 1 20.17960721 -5.313845048 24.99999331 1.31431113 1.639159667 0.309027612 0.237606545 417.0496267 198951.5141 0.066786689 0.099060778 4.85E-06 5.313845048 0.324848537 LRLS(ph)PSPTS(ph)QR ddPTM_HeLa_A485_30min_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.734)PS(0.314)PT(0.079)S(0.874)QR 150.91 2.50E-06 17146000000 898920 1442400 1432000 1030600 1633800 1263600 1388400 1661100 1265500 1310200 TRUE FALSE FALSE 1098881.653 1611076.133 1961756.39 1086899.068 1471133.135 1329760.142 1091756.998 1253712.62 1519474.242 983591.2524 1.117213731 1.637952888 1.994483365 1.105031247 1.495675294 1.351943847 1.109970219 1.274627664 1.54482285 1 19.90769938 -5.294644211 24.99187131 1.286601281 1.588690744 0.239823718 0.255048045 919.0516418 691729.4394 0.071757432 0.106441054 5.07E-06 5.294644211 0.302089463 LRLS(ph)PSPTS(ph)QR ddPTM_HeLa_A486_30min_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.763)PS(0.247)PT(0.18)S(0.81)QR 155.64 1.36E-06 4014900000 1786600 1912700 1975200 588290 2239400 1709200 1971900 1880700 1497500 1811600 TRUE FALSE FALSE 1661368.566 1761130.686 2740050.338 1369568.851 1958513.57 1498336.282 1478509.763 1452505.665 1627304.506 1357963.568 1.223426463 1.296890967 2.017764247 1.008546092 1.442243088 1.103370014 1.08876983 1.069620496 1.198341799 1 20.37301334 -6.011151484 1.333759785 1.089612091 1.45127175 0.271812071 0.246224204 0.581415217 2.138406983 0.105283509 0.117764925 9.75E-07 6.011151484 0.361659658 LRLS(ph)PSPTSQR ddPTM_HeLa_A485_30min_R1 9 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LRLS(0.8)PS(0.2)PTSQR;LRLS(0.998)PS(0.002)PTSQR;LRLS(0.727)PS(0.272)PT(0.002)SQR;LRLS(0.997)PS(0.003)PTSQR;LRLS(0.751)PS(0.248)PT(0.001)SQR;LRLS(0.99)PS(0.01)PTSQR;LRLS(0.5)PS(0.5)PTSQR;LRLS(0.851)PS(0.147)PT(0.002)SQR;LRLS(0.992)PS(0.008)PTSQR ;;;;;;;; 171.99 3.70E-07 60220060000 8433943 12704572 11952736 8582809 13357205 12062623 13300508 15237195 10352986 10645506 TRUE FALSE FALSE 10310044.52 14190261.18 16374550.44 9051666.123 12027314.77 12694203.29 10458745.81 11500249.04 12430735.33 7991777.27 1.290081564 1.77560769 2.048924775 1.132622421 1.504961207 1.588408042 1.30868835 1.439010203 1.555440662 1 22.93008495 -12.1463333 0.164840368 9.89E-15 1.681632834 0.292004392 0.244571424 84.65154631 1.385230174 30.76789307 1.076968274 7.14E-13 12.1463333 1.681632834 LRLS(ph)PSPTSQR ddPTM_HeLa_A486_30min_R1 8 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LRLS(0.366)PS(0.211)PT(0.211)S(0.211)QR;LRLS(0.5)PS(0.5)PTSQR;LRLS(0.987)PS(0.013)PTSQR;LRLS(0.993)PS(0.007)PTSQR;LRLS(0.888)PS(0.098)PT(0.012)S(0.003)QR;LRLS(0.994)PS(0.006)PTSQR;LRLS(0.985)PS(0.015)PTSQR;LRLS(0.987)PS(0.013)PTSQR ;;;;;;; 208.87 8.88E-21 12652200000 3145658 3239192 2847762 905939 3580781 2806512 2963924 3054070 2702804 2982131 TRUE FALSE FALSE 2925163.618 2982506.629 3950491.712 2109071.776 3131646.058 2460273.084 2222318.866 2358724.931 2937085.227 2235385.987 1.308572048 1.334224445 1.767252606 0.943493333 1.400941974 1.100603251 0.994154423 1.055175681 1.31390518 1 21.09209253 -5.275829213 24.99933003 1.123987374 1.456437205 0.453944226 0.177839376 730.5144753 1269114.827 0.049689055 0.074076448 5.30E-06 5.275829213 0.332449831 LRLSPS(ph)PTS(ph)QR ddPTM_HeLa_A485_30min_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.44)PS(0.776)PT(0.176)S(0.608)QR 150.78 2.53E-06 3509500000 221350 330600 320790 245310 389570 324430 352330 412710 306820 323970 TRUE FALSE FALSE 270588.5439 369260.7942 439463.5702 258710.6641 350783.0429 341416.6531 277051.8172 311492.2254 368395.9597 243210.2412 1.112570517 1.518278146 1.806928721 1.063732608 1.44230375 1.403792256 1.139145358 1.280752915 1.514722233 1 17.89184445 -12.79779979 0.220644947 6.77E-13 1.418684914 0.191608274 0.216716735 142.5438159 2.301975425 64.78836337 0.429452879 1.59E-13 12.79779979 1.418684914 LRLSPS(ph)PTS(ph)QR ddPTM_HeLa_A486_30min_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LRLS(0.33)PS(0.671)PT(0.041)S(0.958)QR 125.73 0.00024774 4106000000 1287300 1431900 1324900 443080 1559100 1208000 1259500 1331600 1035000 1306000 TRUE FALSE FALSE 1197066.918 1318431.029 1837936.762 1031512.632 1363543.14 1058969.242 944359.7784 1028423.749 1124714.633 978969.0994 1.222783149 1.346754489 1.877420608 1.05367231 1.39283573 1.081718762 0.964647177 1.050517069 1.148876542 1 19.9009038 -6.024300821 1.387307769 1.040171763 1.434152702 0.398501586 0.201042074 0.424574145 1.679590924 0.085424405 0.094071781 9.46E-07 6.024300821 0.393980939 LRLSPS(ph)PTSQR ddPTM_HeLa_A485_30min_R1 7 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LRLS(0.232)PS(0.768)PTSQR;LRLS(0.417)PS(0.572)PT(0.008)S(0.003)QR;LRLSPS(0.878)PT(0.121)S(0.001)QR;LRLS(0.001)PS(0.963)PT(0.035)SQR;LRLSPS(0.981)PT(0.018)SQR;LRLSPS(0.954)PT(0.045)S(0.001)QR;LRLS(0.168)PS(0.794)PT(0.019)S(0.019)QR ;;;;;; 177.41 6.14E-08 1.44E+11 1872410 3639470 3370950 1510964 3182120 3513380 3544380 4935420 2512240 1995153 TRUE FALSE FALSE 2288921.145 4065074.357 4618004.682 1593504.137 2865296.96 3697335.144 2787094.258 3725000.507 3016423.524 1497798.075 1.528190737 2.714033637 3.083195765 1.06389784 1.91300617 2.468513751 1.860794392 2.48698444 2.013905328 1 20.51441171 -8.040428582 21.18323552 0.999999983 2.155005686 0.270399263 0.557770888 1370.711452 718208.4138 0.542938637 0.140186069 9.11E-09 8.040428582 1.155005703 LRLSPS(ph)PTSQR ddPTM_HeLa_A486_30min_R1 5 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LRLS(0.097)PS(0.901)PT(0.002)SQR;LRLS(0.001)PS(0.868)PT(0.129)S(0.002)QR;LRLS(0.002)PS(0.874)PT(0.123)S(0.002)QR;LRLSPS(0.914)PT(0.086)S(0.001)QR;LRLSPS(0.913)PT(0.086)SQR ;;;; 141 1.33E-06 1.45E+11 1250470 1026556 1077370 336099.8 1551550 890889 1117667 1215435 797888 1225017 TRUE FALSE FALSE 1162818.51 945207.9639 1494556.517 782457.3199 1356940.131 780980.1731 838014.8951 938706.9833 867049.5743 918264.7697 1.266321598 1.029341422 1.627587779 0.852104258 1.477722086 0.850495629 0.912607042 1.022261786 0.944226113 1 19.80855067 -6.280628916 24.84583361 0.945227525 1.237125847 0.354161561 0.205326339 873.4941466 1130961.075 0.067645942 0.059747852 5.24E-07 6.280628916 0.291898322 LRLSPSPTSQR ddPTM_HeLa_A485_30min_R1 4 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 170.23 4.51E-08 1278710000 326588 478525 474370 319480 497192 445721 490081 563763 385813 425621 FALSE FALSE TRUE 399236.3739 534484.3361 649859.2032 336932.3834 447689.8187 469058.2623 385371.1908 425499.2403 463242.1302 319521.5177 1.249481965 1.672764764 2.033851141 1.054490433 1.401125727 1.468002111 1.206088384 1.331676325 1.44979948 1 18.28555356 -11.61771658 0.084314329 6.92E-07 1.922626455 0.236560177 0.251089539 188.6181817 1.885107443 44.88164705 9.184853182 2.41E-12 11.61771658 1.922625764 LRLSPSPTSQR ddPTM_HeLa_A486_30min_R1 4 LRLSPSPTSQR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 192.68 6.69E-11 980050000 402138 421264 376279 118706 467276 347297 384682 416987 339939 380756 FALSE FALSE TRUE 373950.2028 387881.5064 521984.3059 276353.5671 408665.8869 304451.0272 288430.4948 322048.1629 369405.1862 285412.2193 1.310210907 1.359022075 1.828878621 0.968261162 1.431844397 1.066706352 1.010575145 1.12836151 1.294286514 1 18.12268758 -5.28047654 24.99259756 1.139066364 1.485335753 0.45454865 0.185696631 746.3457253 979825.0028 0.051910401 0.07713621 5.24E-06 5.28047654 0.346269389 LRLT(ph)PQHDQIQTQPLGK ddPTM_HeLa_A485_30min_R1 1 LRLTPQHDQIQTQPLGK 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 LRLT(1)PQHDQIQTQPLGK 119.79 6.25E-05 276230000 215570 245870 195970 216880 299290 251280 292540 348920 195790 276970 TRUE FALSE FALSE 263522.8028 274622.3577 268467.458 228727.6052 269491.6367 264436.6322 230036.4392 263346.8229 235083.2571 207926.4763 1.267384546 1.320766661 1.291165333 1.10004079 1.296091011 1.271779511 1.106335486 1.26653819 1.130607614 1 17.66571395 -13.99999996 0.109265064 0.230031353 1.368055713 0.550072367 0.070213754 130.1890268 0.945839009 22.23233815 0.902445877 1.00E-14 13.99999996 1.13802436 LRNSEGEAT(ph)ELITETFTSK ddPTM_HeLa_A485_30min_R1 1 LRNSEGEATELITETFTSK 19 1 H7C309;A0A2R8Y762;A0A2R8YES7;A0A2R8Y5L2;A0A2R8Y6W8;P19447 H7C309 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit 1 0 LRNS(0.437)EGEAT(0.56)ELIT(0.003)ETFTSK 61.648 0.020976 16622000 20016 26410 23049 24893 30355 26629 37582 37811 26342 36998 TRUE FALSE FALSE 24468.49015 29498.41976 31575.78425 26252.84156 27332.74962 28023.25326 29552.29868 28537.79296 31628.59778 27775.0795 0.880951219 1.062046277 1.136838663 0.94519411 0.984074577 1.008935124 1.063986106 1.027460352 1.138740135 1 14.76150342 -6.757933074 23.11440566 1.059835021 1.008285143 0.119802965 0.07146247 86.28784533 568845.8206 0.028552209 0.02118269 1.75E-07 6.757933074 -0.051549878 LRNT(ph)PYQAPVR ddPTM_HeLa_A486_30min_R1 1 LRNTPYQAPVR 11 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 LRNT(1)PYQAPVR 98.582 0.0018887 89053000 66873 108960 65034 71770 135130 147060 180660 180360 95231 156680 TRUE FALSE FALSE 62185.54803 100325.6128 90216.90647 167084.1871 118180.7354 128917.2324 135456.9572 139295.9652 103485.6998 117446.3082 0.529480654 0.854225342 0.768154469 1.42264316 1.006253302 1.097669517 1.153352194 1.186039539 0.881131994 1 16.84164184 -5.099268023 8.56781628 1.111769431 0.721240161 0.576454337 0.153434216 0.220305302 17.22980192 0.039984596 0.069545445 7.96E-06 5.099268023 -0.390529271 LRNWQWWR ddPTM_HeLa_A485_30min_R1 2 LRNWQWWR 8 1 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 P35579;P35749-4 MYH9;MYH11 Myosin-9;Myosin-11 0 0 ; ; 202.17 2.54E-10 251280000 162014 267360 247660 96315 308410 213572 295090 298270 153043 160150 FALSE FALSE TRUE 198053.4554 298625.4263 339279.74 101576.4446 277703.6175 224754.2997 232041.6108 225118.8148 183757.3263 120227.5523 1.647321695 2.483835198 2.821979932 0.844868273 2.309816777 1.869407597 1.930020252 1.872439474 1.52841277 1 16.87540803 -10.39809373 0.180565559 2.48E-08 2.285536249 0.274686084 0.499421419 35.94039783 1.194177758 18.16363809 1.937309101 4.00E-11 10.39809373 2.285536224 LRNWQWWR ddPTM_HeLa_A486_30min_R1 2 LRNWQWWR 8 1 P35579;P35579-2;P35749-4;P35749-3;P35749;P35749-2 P35579;P35749-4 MYH9;MYH11 Myosin-9;Myosin-11 0 0 ; ; 190.08 2.27E-07 148970000 128966 121754 95444 43607 141067 90750 124956 124563 82935 103722 FALSE FALSE TRUE 119926.1494 112105.7696 132402.4729 101519.2998 123373.0615 79554.18768 93690.68715 96202.72409 90123.87258 77749.33608 1.542471684 1.441887163 1.702940238 1.305725616 1.586805337 1.023213724 1.205035205 1.237344638 1.159159385 1 16.24654274 -6.257111327 24.99937204 1.144789915 1.510557961 0.732714927 0.117754975 201.4301753 1163488.097 0.038109317 0.036833039 5.53E-07 6.257111327 0.365768045 LRPKS(ph)PPPK ddPTM_HeLa_A485_30min_R1 2 LRPKSPPPK 9 2 Q9HCE5 Q9HCE5 METTL14 N6-adenosine-methyltransferase subunit METTL14 1 0 LRPKS(1)PPPK;LRPKS(1)PPPK ; 67.776 0.0073371 4397500000 2320180 2252650 1417740 3014630 2780590 2825420 4475900 4824700 2053060 3891800 TRUE FALSE FALSE 2836296.036 2516077.822 1942221.023 3179311.603 2503744.696 2973354.622 3519587.4 3641434.76 2465090.31 2921645.883 0.970787067 0.861185073 0.664769483 1.088191975 0.856963779 1.017698496 1.204659134 1.246364175 0.843733433 1 21.4783499 -6.433292393 4.170095024 1.096509132 0.886400809 0.267853499 0.143693734 0.286654945 8.921120361 0.053108817 0.045582441 3.69E-07 6.433292393 -0.210108323 LRPKS(ph)PPPK ddPTM_HeLa_A486_30min_R1 2 LRPKSPPPK 9 2 Q9HCE5 Q9HCE5 METTL14 N6-adenosine-methyltransferase subunit METTL14 1 0 LRPKS(1)PPPK;LRPKS(1)PPPK ; 84.507 0.0023116 5487200000 2498400 2250850 1119690 1246640 2328500 2688240 3353580 3355930 1743370 3463250 TRUE FALSE FALSE 2323275.062 2072484.449 1553263.954 2902240.922 2036437.818 2356592.281 2514478.813 2591857.998 1894486.715 2596029.658 0.894933944 0.798328494 0.598322885 1.117953685 0.784443202 0.907767858 0.96858632 0.998393062 0.729763125 1 21.30787543 -5.255898545 24.99998738 0.924163007 0.767308465 0.271352237 0.124168439 647.469884 2921345.539 0.033031271 0.055219509 5.55E-06 5.255898545 -0.156854542 LRPLS(ph)YPQTVGETYGK ddPTM_HeLa_A485_30min_R1 1 LRPLSYPQTVGETYGK 16 1 P63000-2 P63000-2 1 0 LRPLS(1)YPQTVGETYGK 258.87 6.14E-51 599560000 995800 791500 379360 913530 544330 812870 1080600 896720 794630 2127600 TRUE FALSE FALSE 1217312.275 884059.0399 519701.0505 963433.8307 490134.5939 855430.6163 849720.9823 676798.014 954104.9522 1597228.476 0.762140353 0.553495667 0.325376775 0.603190993 0.306865675 0.535571854 0.531997141 0.42373275 0.597350327 1 20.60713927 -8.103778138 5.924749889 0.999993719 0.499834165 0.580096114 0.125765492 0.85965645 48.61260942 0.118893841 0.030862848 7.87E-09 8.103778138 -0.500159553 LRPLS(ph)YPQTVGETYGK ddPTM_HeLa_A486_30min_R1 2 LRPLSYPQTVGETYGK 16 1 P63000-2 P63000-2 1 0 LRPLS(1)YPQTVGETYGK;LRPLS(1)YPQTVGETYGK ; 231.06 9.53E-35 987080000 1126890 1406250 1275180 523870 1885870 1796880 1740720 1533160 1656990 2003260 TRUE FALSE FALSE 1047900.83 1294813.629 1768963.847 1219595.835 1649326.6 1575199.215 1305173.445 1184092.937 1800619.227 1501630.657 0.697841926 0.862271706 1.178028591 0.812180964 1.098357037 1.048992445 0.86917075 0.788538068 1.199109261 1 20.51809858 -4.523217427 24.99981621 0.988022374 0.738949299 0.323751358 0.135360371 11.36841002 839255.851 0.033503538 0.090567409 3.00E-05 4.523217427 -0.249073075 LRPS(ph)LDFDK ddPTM_HeLa_A486_30min_R1 2 LRPSLDFDK 9 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 LRPS(1)LDFDK;LRPS(1)LDFDK ; 122.39 0.00016879 148660000 252330 295340 159493 111639 223777 323740 350840 319570 254730 431490 TRUE FALSE FALSE 234642.97 271936.1828 221252.961 259901.2339 195708.802 283800.2503 263056.1212 246810.8872 276810.2015 323442.0955 0.72545588 0.840756929 0.684057406 0.803547954 0.605081419 0.877437583 0.813302056 0.763075959 0.855826144 1 18.30314793 -8.574096709 0.488777252 1.016053066 0.746861052 0.500886408 0.073833378 1.839497197 0.767668075 0.133815589 0.039181032 2.67E-09 8.574096709 -0.269192014 LRPT(ph)RTSSESIYSRPGSSIPGSPGHTIYAK ddPTM_HeLa_A485_30min_R1 1 LRPTRTSSESIYSRPGSSIPGSPGHTIYAK 30 3 O14639-3;F8W8M4;O14639-2;O14639;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 LRPT(0.349)RT(0.276)S(0.276)S(0.067)ES(0.017)IY(0.006)S(0.007)RPGS(0.001)S(0.001)IPGSPGHTIYAK 94.992 0.00021833 1964100000 174490 523740 490480 66166 581780 449490 426590 663190 374580 172880 TRUE FALSE FALSE 213304.6985 584986.8371 671928.9626 69780.48104 523855.9404 473024.6014 335445.5616 500541.6127 449754.7701 129784.1976 1.643533669 4.507381082 5.177278705 0.537665466 4.036361514 3.64470105 2.584641025 3.856722327 3.465404713 1 16.98575521 -10.07140241 8.243205642 1.000000071 3.314877054 0.215375806 1.299065892 1.19E-06 1.33E-07 1.224073723 0.29688149 8.48E-11 10.07140241 2.314876983 LRPT(ph)RTSSESIYSRPGSSIPGSPGHTIYAK ddPTM_HeLa_A486_30min_R1 1 LRPTRTSSESIYSRPGSSIPGSPGHTIYAK 30 3 O14639-3;F8W8M4;O14639-2;O14639;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 LRPT(0.464)RT(0.242)S(0.242)S(0.049)ES(0.001)IYS(0.002)RPGSSIPGSPGHTIYAK 159.91 1.10E-12 776540000 485380 465130 510280 41255 846480 357870 461880 471440 495810 148950 TRUE FALSE FALSE 451357.3685 428271.4048 707874.0818 96043.72491 740306.5853 313719.638 346312.7387 364103.4035 538787.21 111651.9505 4.042539038 3.835771815 6.340006409 0.860206423 6.63048502 2.809799888 3.101716873 3.261057257 4.825596038 1 16.76864893 -10.0041722 0.403594026 2.29E-26 4.098894406 0.227539349 1.612220629 23.74294121 2.716645179 33.30535506 0.995019704 9.90E-11 10.0041722 4.098894406 LRPTRT(ph)SSESIYSRPGSSIPGSPGHTIYAK ddPTM_HeLa_A485_30min_R1 1 LRPTRTSSESIYSRPGSSIPGSPGHTIYAK 30 3 O14639-3;F8W8M4;O14639-2;O14639;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 LRPT(0.123)RT(0.34)S(0.34)S(0.123)ES(0.015)IY(0.011)S(0.015)RPGS(0.015)S(0.015)IPGS(0.001)PGHT(0.001)IYAK 45.652 0.019317 1577400000 79869 201760 197970 66389 269240 200190 200130 291870 147370 123860 TRUE FALSE FALSE 97635.58351 225354.0769 271207.3412 70015.66296 242433.5202 210671.6388 157370.5906 220288.4249 176945.8072 92983.98147 1.050025843 2.42357956 2.916710351 0.752986287 2.607261126 2.265676684 1.692448399 2.3691008 1.902970861 1 16.50469458 -8.037847102 21.92883189 0.999999981 2.036378152 0.178232094 0.644389053 2148.327011 1244753.718 0.596695109 0.154066015 9.17E-09 8.037847102 1.036378171 LRPTRTSS(ph)ESIYSRPGSSIPGS(ph)PGHTIYAK ddPTM_HeLa_A485_30min_R1 1 LRPTRTSSESIYSRPGSSIPGSPGHTIYAK 30 3 O14639-3;F8W8M4;O14639-2;O14639;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 2 0 LRPT(0.122)RT(0.146)S(0.16)S(0.207)ES(0.083)IY(0.171)S(0.086)RPGS(0.102)S(0.108)IPGS(0.814)PGHTIYAK 97.446 0.00021801 443480000 67941 131170 107060 61916 139700 134180 175660 237840 103930 98210 TRUE FALSE FALSE 83054.24106 146509.1905 146665.9491 65298.3143 125790.9775 141205.4573 138128.806 179509.3671 124787.7977 73728.05442 1.126494409 1.987156607 1.989282781 0.885664417 1.706148066 1.915220175 1.873490452 2.434749818 1.69254158 1 16.16992607 -5.999183004 24.99942956 1.870978638 1.533377966 0.062378864 0.459249003 67.56971961 2067451.919 0.141555343 0.159156015 1.00E-06 5.999183004 -0.337600672 LRPVS(ph)PEEIR ddPTM_HeLa_A486_30min_R1 2 LRPVSPEEIR 10 1 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4;K7EMJ7 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 LRPVS(1)PEEIR;LRPVS(1)PEEIR ; 132.31 3.27E-05 325030000 216480 286355 204872 68154 217492 219401 207758 204692 225704 228248 TRUE FALSE FALSE 201305.8699 263663.1869 284203.9251 158665.9563 190212.1253 192333.5353 155774.751 158088.1 245268.2044 171093.2152 1.176585931 1.541049928 1.661105759 0.927365566 1.111745578 1.124144725 0.910467144 0.92398813 1.433535539 1 17.38442302 -5.266889448 24.99010881 1.056836897 1.467727482 0.497155538 0.183316161 350.5979686 1607592.064 0.050969243 0.07807754 5.41E-06 5.266889448 0.410890585 LRPVS(ph)PEEIRR ddPTM_HeLa_A486_30min_R1 2 LRPVSPEEIRR 11 2 J3KNG6;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;Q08AE8-4;K7EMJ7 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 LRPVS(1)PEEIRR;LRPVS(1)PEEIRR ; 56.29 0.026414 1432060000 387900 520370 477680 139706 556390 422450 512920 517480 433918 450170 TRUE FALSE FALSE 360710.2131 479133.986 662650.4887 325242.6284 486602.3781 370332.4142 384581.9909 399661.1005 471530.3616 337444.5019 1.068946778 1.41988974 1.963731769 0.963840355 1.442021948 1.097461692 1.139689604 1.184375796 1.397356777 1 18.36429072 -5.313140262 24.99971264 1.189074566 1.47776451 0.245839777 0.247253659 498.7242195 241154.6677 0.069055398 0.102425812 4.86E-06 5.313140262 0.288689944 LRQIFNGTFVK ddPTM_HeLa_A485_30min_R1 1 LRQIFNGTFVK 11 1 A8MUD9;P18124;C9JZ88;C9JIJ5 A8MUD9 RPL7 60S ribosomal protein L7 0 0 106.67 0.0024378 25601000 24691 37955 32084 19880 43947 35997 41595 55254 28410 33463 FALSE FALSE TRUE 30183.42777 42393.50709 43953.20673 20965.99406 39571.48237 37881.74726 32707.88845 41702.86987 34111.62641 25121.28994 1.201507878 1.687552955 1.749639721 0.834590664 1.575216976 1.507953905 1.301998764 1.660060847 1.357877183 1 14.61662293 -8.027032314 22.75293157 0.999999985 1.444701755 0.20469959 0.259060111 1361.626224 1146073.178 0.245435475 0.063371167 9.40E-09 8.027032314 0.44470177 LRQPFFQK ddPTM_HeLa_A485_30min_R1 3 LRQPFFQK 8 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ;; ;; 157.33 8.49E-05 320211000 287842 384755 340206 315884 439736 382434 465668 468650 367314 430327 FALSE FALSE TRUE 351871.4599 429748.7503 466062.3566 333139.9431 395954.3398 402457.6529 366174.2276 353712.8527 441030.5506 323054.3985 1.089201885 1.330267448 1.442674543 1.031219338 1.225658408 1.245789114 1.133475444 1.094901832 1.365189741 1 18.30141759 -13.88628694 0.219398521 1.06E-12 1.243677302 0.189594934 0.127934683 244.4472327 2.560906739 108.5602572 0.248939199 1.30E-14 13.88628694 1.243677302 LRQPFFQK ddPTM_HeLa_A486_30min_R1 2 LRQPFFQK 8 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ; ; 157.33 0.00012154 490700000 561580 602170 449970 236810 936740 598720 651640 632370 535400 691040 FALSE FALSE TRUE 522216.142 554451.8561 624210.4346 551305.6477 819245.3344 524856.0137 488592.7797 488393.1555 581808.9031 517999.0861 1.008141049 1.070372267 1.205041575 1.064298495 1.58155749 1.013237335 0.943230969 0.942845593 1.123185192 1 18.98259003 -6.483954952 24.96731786 0.994792378 1.186136977 0.256113415 0.154438428 750.8616648 481634.1161 0.055388724 0.048839124 3.28E-07 6.483954952 0.191344598 LRQPFFQK(ac)R ddPTM_HeLa_A485_30min_R1 2 LRQPFFQKR 9 2 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 1 ; LRQPFFQK(1)R;LRQPFFQK(1)R 151.97 0.00039579 52516000 27022 44213 44328 26604 45427 48379 53602 59604 36029 39629 FALSE TRUE FALSE 33032.95068 49383.32575 60726.77184 28057.30916 40904.12838 50912.04963 42149.49481 44986.02554 43259.68982 29750.21962 1.110343087 1.659931469 2.04122096 0.943095867 1.374918535 1.711316766 1.416779283 1.51212415 1.454096487 1 14.8606127 -8.096505823 12.55438197 0.999999994 1.481960308 0.190021714 0.290196693 135.4134512 17618.62607 0.280634849 0.072469475 8.01E-09 8.096505823 0.481960313 LRQPFFQK(ac)R ddPTM_HeLa_A486_30min_R1 2 LRQPFFQKR 9 2 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 1 ; LRQPFFQK(1)R;LRQPFFQK(1)R 148.52 0.0006866 50061000 32886 32792 29161 11480.6 39374 29509 32770 34719 26140 37506 FALSE TRUE FALSE 30580.86122 30193.44249 40452.92016 26727.417 34435.34577 25868.47961 24570.59939 26814.24161 28405.83625 28114.25348 1.087735132 1.073954979 1.438875843 0.95067141 1.224835858 0.92011974 0.873955249 0.953759688 1.01037135 1 14.77901412 -6.269164366 24.8663176 0.943895804 1.155095661 0.405545609 0.123055427 554.6018429 1785227.92 0.042211684 0.03791385 5.38E-07 6.269164366 0.211199858 LRQPFFQKR ddPTM_HeLa_A485_30min_R1 2 LRQPFFQKR 9 2 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ; ; 130.75 0.00070952 19544600 23560 55467 32848 16644.6 41575 56826 60899 107850 25907 20470.6 FALSE FALSE TRUE 28800.84072 61953.38315 44999.84212 17553.85235 37435.64702 59801.32149 47887.43115 81399.6184 31106.29727 15367.65615 1.874120584 4.031413934 2.928217659 1.142259573 2.436002384 3.891375555 3.116118078 5.296814139 2.024140634 1 13.90760952 -6.236347302 22.70100344 3.33739242 2.518773799 0.028551005 1.271069326 639.4581881 578521.3296 0.411179276 0.410908996 5.80E-07 6.236347302 -0.818618621 LRRES(ph)PESEGPIYEGLIL ddPTM_HeLa_A485_30min_R1 1 LRRESPESEGPIYEGLIL 18 2 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 1 0 LRRES(0.922)PES(0.077)EGPIY(0.001)EGLIL 72.015 0.004253 38293000 12199 17863 19686 12584 19989 15593 18491 23616 14552 17185 TRUE FALSE FALSE 14912.62546 19951.92246 26968.6706 13271.43206 17998.82497 16409.42537 14540.24679 17824.13897 17472.45292 12901.09577 1.15591929 1.546529289 2.090417054 1.028705801 1.395139242 1.271940436 1.127055179 1.381598842 1.354338673 1 13.65520599 -5.300693016 24.999526 1.2438362 1.592513746 0.321985937 0.247968589 648.4708163 412991.3033 0.069819174 0.103560269 5.00E-06 5.300693016 0.348677545 LRRES(ph)PESEGPIYEGLIL ddPTM_HeLa_A486_30min_R1 2 LRRESPESEGPIYEGLIL 18 2 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 1 0 LRRES(0.985)PES(0.015)EGPIYEGLIL;LRRES(0.933)PES(0.067)EGPIYEGLIL ; 81.884 0.0017059 51114000 59653 66938 61361 23800 79433 57099 74697 70680 55227 68119 TRUE FALSE FALSE 55471.63275 61633.5891 85121.6225 55407.60279 69469.77246 50054.70592 56007.02054 54587.70693 60014.12083 51061.55902 1.086367785 1.207044796 1.667039239 1.085113809 1.360510211 0.980281583 1.096852928 1.069056801 1.175328799 1 15.63994997 -6.258630868 24.99368427 1.070654378 1.287634745 0.309038909 0.161889288 324.8079106 2890561.427 0.054732719 0.052453758 5.51E-07 6.258630868 0.216980367 LRRPLS(ph)PETR ddPTM_HeLa_A485_30min_R1 1 LRRPLSPETR 10 2 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 LRRPLS(0.987)PET(0.013)R 57.106 0.025213 366890000 201180 334350 286630 172300 306760 288950 311110 339580 263980 256690 TRUE FALSE FALSE 245931.7969 373449.324 392666.3647 181712.3127 276217.8973 304078.9752 244638.807 256297.4726 316958.3646 192701.907 1.276229181 1.937963821 2.037688006 0.942971014 1.433394726 1.577975952 1.269519387 1.330020426 1.644811769 1 17.55601132 -11.02321349 0.076047344 1.92E-13 2.119431247 0.18889758 0.308660438 221.5147904 2.348511208 57.85539325 16.87515648 9.48E-12 11.02321349 2.119431247 LRRPLS(ph)PETR ddPTM_HeLa_A486_30min_R1 1 LRRPLSPETR 10 2 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 LRRPLS(1)PETR 59.227 0.022302 395890000 243010 254740 280360 54053 331440 195920 219630 224030 202030 203190 TRUE FALSE FALSE 225976.2539 234553.4747 388922.9003 125838.1157 289867.7046 171749.3824 164676.251 173023.2595 219542.1231 152309.9015 1.483660955 1.539975224 2.553497157 0.826197867 1.903144194 1.127631104 1.081192026 1.135994823 1.441417275 1 17.21665021 -5.964957742 1.162308049 1.160771633 1.7414742 0.237492965 0.422940566 0.694355758 1.981330549 0.188002558 0.224331748 1.08E-06 5.964957742 0.580702568 LRRPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_HeLa_A485_30min_R1 4 LRRPSPPEPWDEEDGASCSTFFGSEER 27 2 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 LRRPS(1)PPEPWDEEDGASCSTFFGSEER;LRRPS(1)PPEPWDEEDGASCSTFFGSEER;LRRPS(0.97)PPEPWDEEDGAS(0.019)CS(0.005)T(0.006)FFGSEER;LRRPS(1)PPEPWDEEDGASCSTFFGSEER ;;; 298.88 1.85E-92 3535800000 292958 418633 475427 325749 549359 423505 463129 551642 404204 400195 TRUE FALSE FALSE 358125.4964 467588.4877 651307.2315 343543.843 494662.889 445679.0669 364177.7057 416350.9346 485324.0352 300433.7515 1.192028174 1.556378021 2.167889687 1.143492837 1.64649573 1.483452058 1.212173079 1.385832758 1.61541116 1 18.19668737 -6.562769395 7.860090873 1.336376704 1.555883692 0.12039885 0.299018899 0.562313769 94.52877397 0.113949506 0.088443008 2.74E-07 6.562769395 0.219506988 LRRPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_HeLa_A486_30min_R1 4 LRRPSPPEPWDEEDGASCSTFFGSEER 27 2 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 LRRPS(0.989)PPEPWDEEDGAS(0.002)CS(0.003)T(0.003)FFGS(0.004)EER;LRRPS(1)PPEPWDEEDGASCSTFFGSEER;LRRPS(1)PPEPWDEEDGASCSTFFGSEER;LRRPS(1)PPEPWDEEDGASCSTFFGSEER ;;; 131.08 4.08E-06 1725530000 345444 445354 375313 142555 571855 375068 476040 471332 328148 420112 TRUE FALSE FALSE 321230.1595 410062.5271 520644.2448 331875.2443 500127.6136 328795.9236 356929.757 364019.9927 356592.1329 314913.2207 1.0200593 1.302144528 1.653294338 1.053862533 1.588144227 1.044084217 1.133422586 1.155937473 1.132350468 1 18.2645948 -6.315179807 24.99994483 1.105421443 1.325657412 0.266472666 0.190525069 466.295705 216918.3303 0.065256075 0.057550495 4.84E-07 6.315179807 0.22023597 LRRPS(ph)VNGEPGSVPPPR ddPTM_HeLa_A485_30min_R1 2 LRRPSVNGEPGSVPPPR 17 2 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 LRRPS(1)VNGEPGSVPPPR;LRRPS(1)VNGEPGSVPPPR ; 159.67 9.25E-10 1488270000 517130 749110 571430 1851760 790320 873790 1208090 1238880 684560 1777040 TRUE FALSE FALSE 632163.7844 836711.8981 782825.7362 1952916.96 711632.9658 919540.2933 949971.7023 935042.7375 821944.9128 1334056.632 0.473865778 0.627193687 0.586800978 1.463893596 0.53343535 0.689281303 0.712092485 0.700901832 0.616124453 1 20.34738848 -5.039430957 24.999536 0.801291971 0.56464507 0.176278918 0.25045844 973.2700232 617059.9006 0.068744996 0.119096025 9.13E-06 5.039430957 -0.236646901 LRRPS(ph)VNGEPGSVPPPR ddPTM_HeLa_A486_30min_R1 2 LRRPSVNGEPGSVPPPR 17 2 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 LRRPS(1)VNGEPGSVPPPR;LRRPS(1)VNGEPGSVPPPR ; 107.09 0.00013773 560130000 519760 482350 348730 183391 493040 424370 490520 504940 396390 517220 TRUE FALSE FALSE 483327.508 444126.8293 483767.5953 426943.5161 431198.3258 372015.5441 367786.7078 389976.1848 430749.4044 387704.7455 1.246638102 1.145528484 1.247773211 1.101207868 1.112182223 0.95953312 0.948625757 1.005858683 1.111024328 1 18.56459887 -5.752253897 1.643430963 1.004305732 1.205328713 0.71331377 0.055051109 0.201740486 1.129083978 0.020125529 0.027270206 1.77E-06 5.752253897 0.201022981 LRRY(ph)CVFS(ph)HEELICK ddPTM_HeLa_A485_30min_R1 3 LRRYCVFSHEELICK 15 2 P41229-5;P41229;P41229-4;P41229-3;P41229-2;E9PFH2;Q9BY66-2;Q9BY66;Q9BY66-3 P41229-5 KDM5C;KDM5D Lysine-specific demethylase 5C;Lysine-specific demethylase 5D 2 0 LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK ;; 94.203 0.0099686 1906240000 897230 1494870 1749130 180253 1351700 845880 694410 721630 1053600 242747 TRUE FALSE FALSE 1096815.718 1669682.043 2396205.974 190099.765 1217120.002 890168.9688 546043.6307 544649.111 1265047.856 182234.6403 6.018700485 9.162264868 13.14901475 1.043159328 6.678861932 4.884740723 2.996376703 2.988724372 6.941862719 1 17.4754377 -5.266423782 24.99996757 4.006245088 9.415220522 0.518756812 2.488908016 334.5010199 1677737.665 0.68424655 1.051648893 5.41E-06 5.266423782 5.408975434 LRRY(ph)CVFS(ph)HEELICK ddPTM_HeLa_A486_30min_R1 2 LRRYCVFSHEELICK 15 2 P41229-5;P41229;P41229-4;P41229-3;P41229-2;E9PFH2;Q9BY66-2;Q9BY66;Q9BY66-3 P41229-5 KDM5C;KDM5D Lysine-specific demethylase 5C;Lysine-specific demethylase 5D 2 0 LRRY(1)CVFS(1)HEELICK;LRRY(1)CVFS(1)HEELICK ; 69.935 0.0095665 969640000 467430 676650 679540 13636 748630 342010 229410 355370 557480 71103 TRUE FALSE FALSE 434665.5708 623029.7897 942676.0867 31745.29713 654729.8447 299816.2835 172009.1915 274460.0087 605802.8153 53298.346 8.155329451 11.689477 17.68677938 0.595615052 12.28424321 5.625245547 3.227289484 5.149503301 11.36625919 1 15.70180314 -5.260871921 24.99999956 5.95961463 12.42842318 0.358769908 4.210610478 59.09049563 2603245.382 1.139550392 1.830929693 5.48E-06 5.260871921 6.468808553 LRS(ph)CSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A485_30min_R1 2 LRSCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 37 1 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 LRS(0.499)CS(0.499)VT(0.002)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER;LRS(0.492)CS(0.492)VT(0.016)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER ; 131.33 9.68E-07 398250000 35372 79305 74103 24644 75252 60023 92408 108070 68791 41923 TRUE FALSE FALSE 43240.37937 88579.02989 101516.7834 25990.23932 67759.64665 63165.71147 72664.2759 81565.66305 82596.72271 31472.36764 1.37391568 2.814501626 3.225584569 0.825811379 2.152988534 2.007021277 2.308827754 2.591659579 2.62442037 1 14.94179809 -6.772522029 24.22293119 2.263865245 2.100834326 0 0.760054306 1235.372086 2700070.071 0.317424363 0.216466059 1.69E-07 6.772522029 -0.163030919 LRS(ph)CSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A486_30min_R1 1 LRSCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 37 1 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 LRS(0.594)CS(0.193)VT(0.212)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER 40.937 0.034935 83072000 13969 17198 12130 1907.1 20819 13703 14274 12460 12349 6103.7 TRUE FALSE FALSE 12989.84524 15835.16785 16827.06085 4439.825179 18207.68689 12012.46318 10702.49423 9623.13 13419.42126 4575.293792 2.839128115 3.461016618 3.677809911 0.970391276 3.979566716 2.625506411 2.339192785 2.103281328 2.933018485 1 12.15964867 -9.675917437 0.212059982 1.86E-15 3.275855059 0.323122182 0.802097844 17.74039456 0.993987323 14.38558594 2.155102931 2.11E-10 9.675917437 3.275855059 LRS(ph)ESSYDIDNIVIPMSLVAPAK ddPTM_HeLa_A485_30min_R1 1 LRSESSYDIDNIVIPMSLVAPAK 23 1 A0A0U1RR24;A0AUZ9-2;A0AUZ9 A0A0U1RR24 KANSL1L KAT8 regulatory NSL complex subunit 1-like protein 1 0 LRS(0.258)ES(0.258)S(0.258)Y(0.225)DIDNIVIPMSLVAPAK 85.35 0.0013791 18278000 21577 19588 18173 21958 21271 20355 25160 29181 17909 29684 TRUE FALSE FALSE 26376.72921 21878.64621 24895.94894 23157.50994 19153.18455 21420.75633 19784.36046 22024.314 21503.17203 22284.32509 1.183644966 0.981795325 1.117195555 1.039183814 0.859491345 0.961247704 0.887815107 0.988332108 0.964946075 1 14.44374165 -5.571203946 7.398334632 0.941389555 1.082290176 0.552967183 0.061459003 0.160241228 20.31385588 0.017237238 0.022368494 2.68E-06 5.571203946 0.140900621 LRS(ph)PFLQK ddPTM_HeLa_A485_30min_R1 2 LRSPFLQK 8 1 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 LRS(1)PFLQK;LRS(1)PFLQK ; 122.86 0.00031315 8259300000 2890000 2897900 2309500 2980300 3843600 3046800 3924400 3949100 2616800 4032000 TRUE FALSE FALSE 3532870.53 3236784.197 3163880.156 3143106.242 3460917.688 3206325.737 3085919.881 2980577.033 3141967.757 3026896.603 1.167159303 1.069340853 1.045255445 1.038392339 1.143388144 1.05927825 1.019499601 0.98469734 1.038016216 1 21.52940796 -1 0.179024674 0.987966321 1.581912786 0.484666805 0.039632842 56.81072036 0.636953769 0.099497751 9.169043081 0.1 1 0.593946466 LRS(ph)PFLQK ddPTM_HeLa_A486_30min_R1 2 LRSPFLQK 8 1 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 LRS(1)PFLQK;LRS(1)PFLQK ; 131.54 0.00025921 9197900000 4420100 4417100 2899700 1717880 4757800 4183700 5047200 4963500 3331500 4712800 TRUE FALSE FALSE 4110273.815 4067072.909 4022541.497 3999311.457 4161032.359 3667557.631 3784337.176 3833419.402 3620277.102 3532684.205 1.163498795 1.151269877 1.138664331 1.132088583 1.17786706 1.038178738 1.071235626 1.085129375 1.024794998 1 21.75233336 -6.266514844 24.99411902 1.050898822 1.150677153 0.820587209 0.025324096 187.7340481 924492.8881 0.008617684 0.007847507 5.41E-07 6.266514844 0.099778331 LRS(ph)PPEALVQGR ddPTM_HeLa_A485_30min_R1 5 LRSPPEALVQGR 12 1 Q9UHB6;Q9UHB6-4;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR ;;;; 179.94 4.11E-13 4712850000 760746 1093870 937920 910551 1382510 999380 1178640 1398460 1061050 1191550 TRUE FALSE FALSE 929971.3232 1221788.581 1284895.638 960292.0955 1244862.45 1051705.991 926813.9354 1055485.492 1273993.002 894518.5139 1.039633399 1.365861703 1.436410335 1.073529592 1.39165644 1.175723001 1.036103693 1.17994818 1.424222062 1 19.77075182 -6.484760589 24.74857973 1.165185428 1.268222794 0.086106969 0.159524625 1298.145118 842834.0807 0.05567084 0.04908602 3.28E-07 6.484760589 0.103037367 LRS(ph)PPEALVQGR ddPTM_HeLa_A486_30min_R1 6 LRSPPEALVQGR 12 1 Q9UHB6;Q9UHB6-4;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR ;;;;; 159.4 3.57E-09 6061320000 2221900 2584160 2270570 866339 3015570 2321790 2685420 2784810 2064510 2446890 TRUE FALSE FALSE 2066156.284 2379381.75 3149795.512 2016880.974 2637329.092 2035351.156 2013499.513 2150769.555 2243463.389 1834172.817 1.126478522 1.297250579 1.717283934 1.099613382 1.437884733 1.109683415 1.097769792 1.172610091 1.223147224 1 20.80669815 -6.274845208 24.3223344 1.130000696 1.341648963 0.286764059 0.169132306 764.3334523 1386732.934 0.059193175 0.052515204 5.31E-07 6.274845208 0.211648268 LRS(ph)PRGS(ph)PDGSLQTGKPSAPK ddPTM_HeLa_A486_30min_R1 4 LRSPRGSPDGSLQTGKPSAPK 21 3 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 2 0 LRS(1)PRGS(0.902)PDGS(0.098)LQT(0.001)GKPSAPK;LRS(0.998)PRGS(0.927)PDGS(0.033)LQT(0.022)GKPS(0.019)APK;LRS(0.83)PRGS(0.83)PDGS(0.34)LQTGKPSAPK;LRS(0.996)PRGS(0.753)PDGS(0.152)LQT(0.098)GKPS(0.001)APK ;;; 147.16 1.02E-09 4062830000 1851652 1798300 1178541 1020959 2922550 2446420 3234600 3568920 1663640 2483370 TRUE FALSE FALSE 1721860.757 1655796.159 1634903.638 2376844.148 2555976.527 2144605.574 2425268.868 2756354.825 1807845.655 1861517.988 0.924976695 0.889487058 0.87826368 1.276831147 1.373060343 1.152073516 1.302844713 1.480702761 0.971167438 1 20.82804813 -5.260529061 24.95741448 1.249113385 0.896766916 0.493138961 0.149188186 58.913581 1615161.576 0.039425009 0.063521099 5.49E-06 5.260529061 -0.352346469 LRS(ph)PRGSPDGS(ph)LQTGKPSAPK ddPTM_HeLa_A485_30min_R1 2 LRSPRGSPDGSLQTGKPSAPK 21 3 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 2 0 LRS(1)PRGS(0.005)PDGS(0.948)LQT(0.047)GKPSAPK;LRS(0.929)PRGS(0.209)PDGS(0.508)LQT(0.352)GKPS(0.002)APK ; 115.45 3.00E-05 3315600000 441990 425630 334176 620990 786960 603620 1065760 1189320 526790 865760 TRUE FALSE FALSE 540309.1507 475403.726 457801.6086 654913.1113 708607.4992 635224.6098 838051.6695 897637.4052 632511.921 649941.9651 0.831319071 0.731455655 0.704373057 1.0076486 1.090262727 0.977355893 1.289425386 1.381103934 0.973182153 1 19.30995138 -5.524077391 1.768018092 1.150672484 0.747191689 0.5943423 0.131517514 0.240277761 1.512386965 0.045176762 0.073270088 2.99E-06 5.524077391 -0.403480794 LRS(ph)PRGSPDGS(ph)LQTGKPSAPK ddPTM_HeLa_A486_30min_R1 2 LRSPRGSPDGSLQTGKPSAPK 21 3 C9JFV4;Q8IZL8;E7EV54 C9JFV4 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 2 0 LRS(1)PRGS(0.012)PDGS(0.969)LQT(0.019)GKPSAPK;LRS(1)PRGS(0.066)PDGS(0.932)LQT(0.002)GKPSAPK ; 171.08 4.94E-14 3150000000 1055930 1032860 666010 643980 1642070 1484600 1976630 2070990 946270 1482430 TRUE FALSE FALSE 981914.7598 951012.412 923906.9084 1499217.985 1436106.269 1301445.146 1482056.267 1599470.786 1028293.445 1111219.879 0.883636784 0.855827393 0.831434827 1.349164115 1.292369131 1.171185983 1.333720081 1.439382805 0.925373515 1 20.08371288 -5.253740783 24.90369873 1.240426872 0.856852408 0.540906504 0.150343408 387.2945896 1252831.256 0.039462883 0.066718052 5.58E-06 5.253740783 -0.383574464 LRS(ph)PS(ph)NDSAHR ddPTM_HeLa_A485_30min_R1 3 LRSPSNDSAHR 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 LRS(1)PS(0.998)NDS(0.002)AHR;LRS(1)PS(0.922)NDS(0.078)AHR;LRS(1)PS(0.999)NDS(0.001)AHR ;; 134.25 3.10E-05 7794240000 2853110 4074000 3803250 3269640 5461800 3972580 4724520 5484680 3764120 4500730 TRUE FALSE FALSE 3487774.476 4550418.861 5210230.441 3448252.154 4918004.014 4180578.146 3715087.706 4139553.63 4519544.357 3378780.841 1.032258273 1.346763544 1.542044509 1.020561059 1.45555579 1.237303733 1.099534975 1.225161922 1.33762578 1 21.68807134 -6.523799205 24.98749953 1.182069178 1.289688907 0.08350583 0.172965007 88.79244487 2410274.149 0.064178724 0.050163882 2.99E-07 6.523799205 0.107619729 LRS(ph)PS(ph)NDSAHR ddPTM_HeLa_A486_30min_R1 3 LRSPSNDSAHR 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 LRS(1)PS(0.999)NDS(0.001)AHR;LRS(1)PS(0.999)NDS(0.001)AHR;LRS(1)PS(0.999)NDS(0.001)AHR ;; 85.469 0.0040221 7235830000 3089440 3641660 3218230 957511 4495100 3467100 3784260 3758560 3068370 3424760 TRUE FALSE FALSE 2872886.21 3353081.599 4464414.843 2229133.998 3931282.643 3039364.453 2837398.122 2902817.937 3334338.782 2567177.805 1.119083456 1.306135318 1.739036087 0.868320844 1.531363599 1.183932195 1.105259681 1.130742846 1.298834376 1 21.29175179 -6.500997082 24.04251781 1.14460319 1.316030307 0.12486807 0.226068444 1054.393069 1158519.007 0.077751901 0.067919818 3.16E-07 6.500997082 0.171427117 LRS(ph)PSNDSAHR ddPTM_HeLa_A485_30min_R1 9 LRSPSNDSAHR 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LRS(0.997)PS(0.003)NDSAHR;LRS(0.999)PS(0.001)NDSAHR;LRS(0.95)PS(0.05)NDSAHR;LRS(0.996)PS(0.004)NDSAHR;LRS(1)PSNDSAHR;LRS(0.992)PS(0.008)NDSAHR;LRS(0.988)PS(0.012)NDSAHR;LRS(0.997)PS(0.003)NDSAHR;LRS(0.988)PS(0.012)NDSAHR ;;;;;;;; 200.19 5.88E-15 3153868000 821387.6 1342858.8 1260797.3 654947.1 1499635 1097546.2 1259510.8 1439923 1149404.8 1090433.1 TRUE FALSE FALSE 1004102.438 1499894.455 1727218.687 690725.2017 1350326.074 1155012.022 990406.0283 1086779.627 1380079.8 818608.1961 1.226597098 1.832249497 2.10994551 0.843779973 1.649538913 1.410946076 1.209865761 1.327594363 1.685885637 1 19.64281359 -5.251415174 24.99670701 1.332532378 1.73386253 0.26522591 0.316933021 984.6153858 2455266.139 0.084349256 0.143855955 5.61E-06 5.251415174 0.401330152 LRS(ph)PSNDSAHR ddPTM_HeLa_A486_30min_R1 6 LRSPSNDSAHR 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LRS(1)PSNDSAHR;LRS(0.998)PS(0.002)NDSAHR;LRS(0.908)PS(0.092)NDSAHR;LRS(1)PSNDSAHR;LRS(0.98)PS(0.02)NDSAHR;LRS(0.998)PS(0.002)NDSAHR ;;;;; 170.42 2.04E-08 5598353000 2115725 2429948 2300309.3 226898.7 2862508 1974035.2 2383349.8 2332510 2221937.4 1706427.4 TRUE FALSE FALSE 1967423.603 2237390.071 3191050.665 528231.6404 2503465.555 1730498.808 1787010.472 1801448.391 2414536.723 1279126.872 1.538098875 1.749154145 2.494710052 0.412962664 1.95716751 1.352875032 1.397054906 1.40834223 1.887644436 1 20.28672794 -5.227259089 24.99995712 1.390148466 1.90950403 0.241826849 0.467333932 988.2008418 722783.2799 0.121474403 0.21038659 5.93E-06 5.227259089 0.519355564 LRS(ph)YLASHRR ddPTM_HeLa_A485_30min_R1 1 LRSYLASHRR 10 2 A0A3B3IT03;Q6ZNG1 A0A3B3IT03 ZNF600 Zinc finger protein 600 1 0 LRS(1)YLASHRR 71.548 0.0092151 132680000 65695 73710 84154 67137 80351 67729 63701 63568 76444 96716 TRUE FALSE FALSE 80308.6261 82329.74331 115286.0665 70804.52431 72350.97231 71275.18571 50090.76096 47977.84833 91785.60961 72606.48113 1.106080681 1.133917276 1.587820602 0.975181874 0.996480909 0.981664234 0.689893797 0.660792915 1.264151742 1 16.14781071 -5.493652285 22.83939245 0.912861925 1.265031541 0.371885573 0.200655463 251.0607895 196193.8022 0.057555422 0.085127912 3.21E-06 5.493652285 0.352169616 LRSCSVT(ph)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A485_30min_R1 1 LRSCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 37 1 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 LRS(0.317)CS(0.317)VT(0.365)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER 61.871 0.0088027 144230000 13376 23813 20377 10153 25073 20525 22620 28340 17930 13531 TRUE FALSE FALSE 16351.44505 26597.7232 27915.30026 10707.63268 22576.64408 21599.65726 17787.05221 21389.57056 21528.38654 10157.97072 1.60971571 2.618409123 2.748117811 1.054111395 2.222554554 2.126375224 1.751043855 2.105693268 2.119358987 1 13.3103246 -10.80856555 2.504716261 0.652063428 2.049777803 0.313346816 0.461406072 17351406.31 11487550.92 36585290.49 0.115717195 1.55E-11 10.80856555 1.397714375 LRSFS(ph)MQDLR ddPTM_HeLa_A485_30min_R1 3 LRSFSMQDLR 10 1 E5RGS2;Q9H6H4 E5RGS2 REEP4 Receptor expression-enhancing protein;Receptor expression-enhancing protein 4 1 0 LRS(0.148)FS(0.852)MQDLR;LRS(0.13)FS(0.87)MQDLR;LRS(0.003)FS(0.997)MQDLR ;; 108.17 0.0001793 209290000 526750 1167960 895500 413596 1061700 998880 1183630 1969960 877750 749000 TRUE FALSE FALSE 643923.7202 1304542.762 1226782.715 436189.7022 955993.4201 1051179.812 930737.7811 1486824.221 1053906.374 562288.0843 1.145184716 2.32006119 2.181769006 0.775740611 1.700184384 1.869468412 1.655268548 2.644239248 1.87431746 1 19.10094995 -6.67415647 2.236018843 1.94392302 1.659717811 0 0.567648514 1.1758909 12.00675201 0.26558181 0.184880735 2.12E-07 6.67415647 -0.284205208 LRSFS(ph)MQDLR ddPTM_HeLa_A486_30min_R1 1 LRSFSMQDLR 10 1 E5RGS2;Q9H6H4 E5RGS2 REEP4 Receptor expression-enhancing protein;Receptor expression-enhancing protein 4 1 0 LRS(0.065)FS(0.935)MQDLR 112.15 0.00031335 143310000 324780 242980 255930 87367 363770 232050 298230 314900 185890 351320 TRUE FALSE FALSE 302014.5992 223725.3799 355032.95 203394.7913 318142.5746 203422.0303 223609.6996 243204.1442 202003.0949 263347.1853 1.146830557 0.849545362 1.348155476 0.772344656 1.208072812 0.77244809 0.849106093 0.923511462 0.767060011 1 18.00660651 -6.274700185 24.98239529 0.856812158 1.052494011 0.266067983 0.167444133 1081.285965 2037058.398 0.054483388 0.048318008 5.31E-07 6.274700185 0.195681853 LRSS(ph)VPGVR ddPTM_HeLa_A485_30min_R1 6 LRSSVPGVR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 LRS(0.007)S(0.993)VPGVR;LRS(0.019)S(0.981)VPGVR;LRS(0.049)S(0.951)VPGVR;LRS(0.083)S(0.917)VPGVR;LRS(0.084)S(0.916)VPGVR;LRS(0.037)S(0.963)VPGVR ;;;;; 132.17 0.00010806 18641600000 2206041 2895420 2859870 1979883 3145860 2648570 3212670 3574190 2327000 2451391 TRUE FALSE FALSE 2696767.21 3234014.182 3917854.922 2088038.995 2832647.133 2787245.03 2526256.809 2697614.298 2794007.555 1840304.338 1.465391976 1.75732574 2.128916854 1.134616135 1.539227547 1.514556572 1.372738605 1.465852274 1.51823125 1 20.81151294 -11.47275637 0.107412484 6.79E-12 1.956094403 0.360361303 0.235198443 94.96720411 1.258159294 27.38271508 3.991362547 3.37E-12 11.47275637 1.956094403 LRSS(ph)VPGVR ddPTM_HeLa_A486_30min_R1 6 LRSSVPGVR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 LRS(0.025)S(0.975)VPGVR;LRS(0.021)S(0.979)VPGVR;LRS(0.006)S(0.994)VPGVR;LRS(0.037)S(0.963)VPGVR;LRS(0.025)S(0.975)VPGVR;LRS(0.006)S(0.994)VPGVR ;;;;; 161.93 6.14E-06 13666320000 2421050 2697290 2619030 920760 3383050 2424290 2784840 2982720 2295570 2587580 TRUE FALSE FALSE 2251346.897 2483546.917 3633188.556 2143575.813 2958716.323 2125205.748 2088043.577 2303619.768 2494551.856 1939633.126 1.160707593 1.280420964 1.873131835 1.10514498 1.525399976 1.095674084 1.076514702 1.187657469 1.286094686 1 20.88735237 -6.274392855 24.39504964 1.13762467 1.394061881 0.273615819 0.211324552 809.8375295 1525147.477 0.073836219 0.065551795 5.32E-07 6.274392855 0.256437211 LRT(ph)SPALK ddPTM_HeLa_A486_30min_R1 2 LRTSPALK 8 1 H0Y2V6;Q5SW79;Q5SW79-3 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LRT(0.649)S(0.351)PALK;LRT(0.5)S(0.5)PALK ; 94.616 0.0037506 382720000 506270 512370 328670 193908 513720 514940 587580 585470 382140 590990 TRUE FALSE FALSE 470783.0874 471767.9352 455939.8261 451427.6236 449284.4474 451411.9383 440561.2692 452171.2617 415264.2029 443002.2573 1.062710358 1.064933479 1.029204295 1.019018789 1.014180944 1.018983382 0.994489897 1.020697421 0.937386201 1 18.75695452 -4.619504789 0.37247351 0.982808348 1.117221481 0.631339221 0.020762028 3.002272702 0.404559725 0.018575487 0.17725537 2.40E-05 4.619504789 0.134413133 LRTACER ddPTM_HeLa_A485_30min_R1 1 LRTACER 7 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741;Q53FA3;P34931 P11142;A0A0G2JIW1;P17066;Q53FA3 HSPA8;HSPA2;HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like 0 0 90.709 0.0085503 60716000 26346 64170 32049 21940 27839 56110 49062 95225 32232 30076 FALSE FALSE TRUE 32206.57681 71674.1233 43905.25877 23138.52664 25067.25141 59047.83284 38579.5029 71870.91944 38700.66675 22578.60671 1.426420028 3.174426315 1.944551289 1.024798693 1.110221358 2.615211541 1.708675092 3.18314236 1.714041404 1 14.46266884 -6.28553909 24.88016725 2.159689185 1.788056961 0.025035548 0.782378947 2762.786385 2852248.041 0.281242146 0.248156854 5.18E-07 6.28553909 -0.371632224 LRTACER ddPTM_HeLa_A486_30min_R1 1 LRTACER 7 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;P17066;P48741;Q53FA3;P34931 P11142;A0A0G2JIW1;P17066;Q53FA3 HSPA8;HSPA2;HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like 0 0 73.248 0.023634 14503000 16934 14791 17988 6701.3 13453 17017 12195 12488 11967 22171 FALSE FALSE TRUE 15747.01405 13618.90729 24953.43534 15600.96506 11765.5993 14917.61556 9143.682014 9644.755011 13004.3092 16619.23729 0.947517252 0.819466444 1.501478973 0.938729305 0.707950617 0.897611322 0.550186621 0.580336801 0.782485319 1 14.02056655 -5.598522462 4.844431808 0.731590514 1.085767941 0.348062335 0.205814945 0.21975756 9.509729383 0.062384314 0.081848338 2.52E-06 5.598522462 0.354177427 LRTESCR ddPTM_HeLa_A485_30min_R1 1 LRTESCR 7 1 D6RBC9;E9PDJ7;A0A0B4J202;P48645 D6RBC9 NMU Neuromedin-U;Neuromedin-U-25 0 0 70.912 0.026158 14310000 5460.4 11624 7093.9 5342.9 5827.5 10594 7656.7 15618 7632.3 7565.6 FALSE FALSE TRUE 6675.047142 12983.32568 9718.228812 5634.769098 5247.293638 11148.68546 6020.783496 11787.66101 9164.032602 5679.635155 1.175259847 2.285943609 1.711065684 0.992100539 0.923878646 1.962922821 1.060065186 2.075425743 1.613489661 1 12.47158254 -10.46013613 3.25562613 0.990550444 1.541525219 0.108436511 0.458259332 325501311.6 405958460.7 27862364.37 0.116959703 3.47E-11 10.46013613 0.550974775 LRTGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGKR ddPTM_HeLa_A485_30min_R1 1 LRTGDLGIPPNPEDRSPSPEPIYNSEGKR 29 3 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 LRTGDLGIPPNPEDRS(1)PS(0.994)PEPIY(0.001)NS(0.005)EGKR 71.05 0.0029968 293030000 29290 60009 44759 36826 55404 56185 82783 101950 46023 44575 TRUE FALSE FALSE 35805.45945 67026.53054 61317.21668 38837.71113 49887.78322 59126.75972 65095.73578 76946.60265 55259.39395 33463.27284 1.069992754 2.002987898 1.832373569 1.160607073 1.490821996 1.76691503 1.945288976 2.299434458 1.651344571 1 15.03029093 -6.367341915 4.690897834 1.834251686 1.537831654 0.041649132 0.40320434 0.553614439 19.54596508 0.143838273 0.126018095 4.29E-07 6.367341915 -0.296420032 LRTS(ph)PALK ddPTM_HeLa_A485_30min_R1 1 LRTSPALK 8 1 H0Y2V6;Q5SW79;Q5SW79-3 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LRT(0.152)S(0.848)PALK 82.417 0.0035555 245930000 226370 240260 201750 241540 278610 258140 333750 342080 219440 312640 TRUE FALSE FALSE 276725.2255 268356.317 276385.7205 254734.7186 250870.6101 271655.8112 262441.586 258184.3436 263479.5952 234704.6017 1.179036216 1.143379018 1.177589696 1.085341816 1.068878106 1.15743709 1.118178272 1.100039547 1.122600892 1 17.8404866 -14 0.124272684 0.594918821 1.182979206 0.614832222 0.032336145 110.1303806 0.875903375 11.2335549 0.299951121 1.00E-14 14 0.588060384 LRTS(ph)TSDLSR ddPTM_HeLa_A485_30min_R1 4 LRTSTSDLSR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 LRT(0.001)S(0.493)T(0.493)S(0.013)DLSR;LRT(0.003)S(0.996)T(0.002)SDLSR;LRT(0.32)S(0.659)T(0.02)S(0.001)DLSR;LRT(0.007)S(0.99)T(0.003)SDLSR ;;; 163.33 2.47E-07 3316520000 690989 990950 1110350 710958 1115910 950950 1043250 1135060 895544 920182 TRUE FALSE FALSE 844697.1192 1106832.982 1521114.671 749795.8353 1004806.082 1000740.272 820351.1149 856684.7553 1075271.466 690797.5621 1.222785322 1.602253747 2.201968788 1.085406024 1.454559392 1.448673716 1.187541995 1.240138649 1.55656523 1 19.39790347 -5.307103289 24.99999265 1.302065393 1.66833012 0.300176956 0.274281066 548.0189114 300027.2297 0.077001369 0.114212059 4.93E-06 5.307103289 0.366264727 LRTS(ph)TSDLSR ddPTM_HeLa_A486_30min_R1 4 LRTSTSDLSR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 LRT(0.004)S(0.98)T(0.015)S(0.001)DLSR;LRT(0.005)S(0.989)T(0.006)SDLSR;LRT(0.002)S(0.996)T(0.002)SDLSR;LRT(0.001)S(0.986)T(0.011)S(0.001)DLSR ;;; 170.95 1.23E-07 3459020000 1117550 1289910 1269830 382405 1580550 974850 1137340 1170740 1040370 1163600 TRUE FALSE FALSE 1039215.516 1187692.834 1761542.183 890258.1657 1382302.681 854582.9185 852765.5024 904188.0591 1130550.109 872226.9862 1.191450772 1.361678614 2.019591472 1.020672577 1.584796965 0.979771243 0.977687593 1.036643068 1.29616502 1 19.7343441 -6.26767309 24.95452556 1.055320703 1.440917439 0.345845132 0.259582934 581.1890855 2326584.055 0.089748475 0.081104794 5.40E-07 6.26767309 0.385596736 LRVDKWWGNRK ddPTM_HeLa_A485_30min_R1 2 LRVDKWWGNRK 11 3 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969;H0Y9R4 E7ESE0 RPL9 60S ribosomal protein L9 0 0 ; ; 132.17 0.00044235 49492000 63748 109977 61464 33418 71296 78615 94928 187644 45348 54127 FALSE FALSE TRUE 77928.52267 122837.8535 84202.09133 35243.54072 64197.5199 82731.15984 74645.85731 141624.0148 54448.92764 40634.13503 1.917809315 3.023021245 2.072200904 0.867338278 1.579891386 2.036001499 1.83702341 3.485345872 1.339979985 1 15.31040456 LRVDKWWGNRK ddPTM_HeLa_A486_30min_R1 1 LRVDKWWGNRK 11 3 E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969;H0Y9R4 E7ESE0 RPL9 60S ribosomal protein L9 0 0 77.593 0.018073 10367000 27528 12115 10934 6858.2 23733 10748 13267 12854 7284.8 14836 FALSE FALSE TRUE 25598.42935 11154.96328 15167.93762 15966.23619 20756.18584 9422.021038 9947.456276 9927.424801 7916.252329 11120.96903 2.30181644 1.00305677 1.363904312 1.435687497 1.86640083 0.84723022 0.894477473 0.892676238 0.711831164 1 13.44099488 -6.279185363 24.24881895 0.864112337 1.539735885 0.550415322 0.325717992 459.771411 628247.6267 0.112228207 0.099210459 5.26E-07 6.279185363 0.675623548 LRVEFPR ddPTM_HeLa_A485_30min_R1 4 LRVEFPR 7 1 Q13242;S4R3G0;J3KTL2;Q07955;Q07955-3;Q07955-2 Q13242;J3KTL2 SRSF9;SRSF1 Serine/arginine-rich splicing factor 9;Serine/arginine-rich splicing factor 1 0 0 ;;; ;;; 163.67 0.00047629 628189000 172117 230867 265197 179548 266074 243917 296879 319136 215447 247517 FALSE FALSE TRUE 210403.8329 257864.8874 363304.4061 189356.2526 239582.7383 256688.117 233448.3764 240867.3956 258685.2367 185815.5671 1.132326188 1.387746416 1.95518821 1.019054838 1.289357733 1.381413414 1.256344557 1.296271348 1.392161274 1 17.50351185 -12.90773703 0.21251701 1.80E-08 1.404222209 0.161987385 0.233383294 165.8964352 2.516968581 72.02136642 0.508479006 1.24E-13 12.90773703 1.404222191 LRVEFPR ddPTM_HeLa_A486_30min_R1 2 LRVEFPR 7 1 Q13242;S4R3G0;J3KTL2;Q07955;Q07955-3;Q07955-2 Q13242;J3KTL2 SRSF9;SRSF1 Serine/arginine-rich splicing factor 9;Serine/arginine-rich splicing factor 1 0 0 ; ; 155.75 0.00077312 77191000 44234 48386 42696 11722 54898 40550 46870 50367 37272 46170 FALSE FALSE TRUE 41133.42502 44551.71714 59229.03464 27289.4084 48012.18094 35547.35328 35142.63026 38899.5336 40502.76697 34608.73148 1.188527382 1.287297027 1.711389933 0.78851224 1.387285199 1.027120954 1.015426707 1.123980335 1.170304869 1 15.07884844 -5.264699286 24.99907716 1.087154349 1.384893994 0.376707319 0.189358196 315.0433183 2415960.365 0.051336857 0.079830586 5.44E-06 5.264699286 0.297739645 LRVQS(ph)PEPPAPER ddPTM_HeLa_A485_30min_R1 2 LRVQSPEPPAPER 13 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 LRVQS(1)PEPPAPER;LRVQS(1)PEPPAPER ; 86.367 0.00093173 869510000 243669 188839 220553 464671 361200 227190 341860 286150 251551 640470 TRUE FALSE FALSE 297872.3284 210922.0784 302144.7327 490054.8001 325237.6597 239085.3171 268818.8183 215971.2638 302034.9783 480812.616 0.619518537 0.438678336 0.628404336 1.019222008 0.67643329 0.497252587 0.559092689 0.449179694 0.628176068 1 18.87511523 -9.575015359 3.589257604 1.000000957 0.61223923 0.356842308 0.155911 1101660.788 2506465.219 51.59683574 0.043515427 2.66E-10 9.575015359 -0.387761726 LRVS(ph)LGTR ddPTM_HeLa_A485_30min_R1 2 LRVSLGTR 8 1 A0A0J9YX63;Q96CW5 A0A0J9YX63 TUBGCP3 Gamma-tubulin complex component 3 1 0 LRVS(1)LGTR;LRVS(1)LGTR ; 88.155 0.0020751 292360000 96747 114918 144854 120108 148004 144672 159556 182777 128015 165771 TRUE FALSE FALSE 118268.0364 128356.6604 198441.5225 126669.1959 133268.2021 152246.8022 125465.5571 137950.6542 153706.4363 124447.3405 0.950346033 1.031413447 1.594582268 1.01785378 1.070880274 1.223383333 1.008181908 1.108506245 1.235112263 1 16.92517587 LRVS(ph)LGTR ddPTM_HeLa_A486_30min_R1 2 LRVSLGTR 8 1 A0A0J9YX63;Q96CW5 A0A0J9YX63 TUBGCP3 Gamma-tubulin complex component 3 1 0 LRVS(1)LGTR;LRVS(1)LGTR ; 115.18 0.00048192 423910000 100867 99180 113420 37401 137895 107417 128010 123347 102088 125306 TRUE FALSE FALSE 93796.74418 91320.61559 157339.2615 87071.41814 120598.9233 94164.98268 95980.54405 95263.58075 110937.07 93928.56199 0.998596616 0.972234788 1.675094967 0.92699618 1.283943038 1.002517027 1.021846199 1.014213129 1.181079191 1 16.5192763 -6.281967275 24.39959133 1.043439119 1.174717943 0.088132142 0.20482146 1620.167129 1925733.753 0.071589584 0.063211112 5.22E-07 6.281967275 0.131278823 LRYDSYS(ph)SYCNAVAEAEIEAEEGGVEMK ddPTM_HeLa_A485_30min_R1 1 LRYDSYSSYCNAVAEAEIEAEEGGVEMK 28 1 Q08357 Q08357 SLC20A2 Sodium-dependent phosphate transporter 2 1 0 LRY(0.007)DS(0.29)Y(0.006)S(0.346)S(0.346)Y(0.006)CNAVAEAEIEAEEGGVEMK 99.789 0.00054754 27258000 22306 19074 18877 20708 32117 17685 25914 20962 16325 35575 TRUE FALSE FALSE 27267.89275 21304.53838 25860.38784 21839.2256 28919.31871 18610.95925 20377.2622 15821.03663 19601.27776 26706.80721 1.021009083 0.797719406 0.96830698 0.81774004 1.082844478 0.696862006 0.762998813 0.592397156 0.733943133 1 14.70491989 -6.287678321 24.9378068 0.732124936 0.924812595 0.329594877 0.125386488 779.8867872 741211.1003 0.04146993 0.036583715 5.16E-07 6.287678321 0.192687659 LS(ph)AETWDLLR ddPTM_HeLa_A485_30min_R1 1 LSAETWDLLR 10 0 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 LS(1)AETWDLLR 121.02 0.00022088 12498000 20656 21044 17707 17401 22042 21217 22036 20908 21704 27961 TRUE FALSE FALSE 25250.85594 23504.91274 24257.55615 18351.57257 19847.42109 22327.88931 17327.82858 15780.28022 26059.79372 20990.83728 1.202946581 1.119770137 1.155625944 0.874265868 0.945527842 1.063696936 0.825494874 0.751769927 1.241484242 1 14.35747209 -5.248805526 24.25622642 0.945550362 1.155479852 0.338933921 0.128481203 575.6495764 1105208.431 0.034379584 0.058992284 5.64E-06 5.248805526 0.20992949 LS(ph)AETWDLLR ddPTM_HeLa_A486_30min_R1 2 LSAETWDLLR 10 0 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 LS(1)AETWDLLR;LS(0.998)AET(0.002)WDLLR ; 130.1 8.21E-05 30732000 63869 73717 50081 26083 64193 68705 75945 68222 55483 64541 TRUE FALSE FALSE 59392.11292 67875.39645 69473.70442 60722.54216 56141.31536 60228.87564 56942.75774 52689.33988 60292.31111 48379.51351 1.227629395 1.402978069 1.436014945 1.255129243 1.160435715 1.244925202 1.177001454 1.089083706 1.246236408 1 15.56210864 -6.660402108 0.259888852 0.990057626 1.431377375 0.570724737 0.081181753 1.872291426 0.35463741 0.167523334 0.294980801 2.19E-07 6.660402108 0.441319749 LS(ph)AEYEK ddPTM_HeLa_A485_30min_R1 4 LSAEYEK 7 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LS(1)AEYEK;LS(1)AEYEK;LS(1)AEYEK;LS(1)AEYEK ;;; 116.52 0.0024027 3370730000 4186580 3672540 2465000 4529770 2924970 3199180 4142290 3622060 2871070 5139700 TRUE FALSE FALSE 5117870.277 4102011.606 3376906.077 4777219.865 2633749.717 3366684.118 3257255.902 2733744.106 3447267.414 3858467.379 1.326399779 1.063119421 0.875193631 1.238113322 0.682589603 0.872544404 0.844183864 0.708505175 0.893429197 1 21.87959648 -1 0.501627994 0.834138399 16.49713032 0.482150375 0.143166157 87.79033987 0.930820469 0.076416617 1449.854494 0.1 1 15.66299192 LS(ph)AEYEK ddPTM_HeLa_A486_30min_R1 4 LSAEYEK 7 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LS(1)AEYEK;LS(1)AEYEK;LS(1)AEYEK;LS(0.999)AEY(0.001)EK ;;; 140.45 0.0015171 2960160000 6252470 6062940 2446850 1755150 3703470 5302640 5997210 5220260 4206300 8228770 TRUE FALSE FALSE 5814204.141 5582490.554 3394335.849 4086077.9 3238946.259 4648454.19 4496644.626 4031720.755 4570905.471 6168232.432 0.94260458 0.905038942 0.550293117 0.662439029 0.525101201 0.753612034 0.729000516 0.653626594 0.741039758 1 22.5564257 -8.043628603 20.76387557 1.000000003 0.70891559 0.310242248 0.126349457 1274.77303 606695.6347 0.129913317 0.033543474 9.04E-09 8.043628603 -0.291084413 LS(ph)AEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK ddPTM_HeLa_A485_30min_R1 1 LSAEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK 38 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LS(1)AEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK 320.95 9.10E-112 113780000 15843 7248.4 6156.2 65212 25692 14992 40607 23537 15229 90168 TRUE FALSE FALSE 19367.22069 8096.037327 8433.634561 68774.36643 23134.01427 15776.95794 31930.98272 17764.51385 18285.32061 67690.77702 0.286113139 0.119603256 0.124590601 1.016007933 0.341760211 0.233073967 0.471718366 0.262436252 0.270130163 1 16.04667166 -11.05704933 2.570640952 1.909253136 0.351338006 0.392114174 0.243767012 42214698.91 15013218.4 225413507.9 0.062590518 8.77E-12 11.05704933 -1.557915129 LS(ph)AEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK ddPTM_HeLa_A486_30min_R1 1 LSAEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK 38 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LS(1)AEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK 129.9 5.88E-07 167010000 5858.1 6000.7 1545.9 6219.7 3980.3 10216 15046 12633 6402.8 12567 TRUE FALSE FALSE 5447.477441 5525.182678 2144.513881 14479.77593 3481.053659 8955.653789 11281.33166 9756.741676 6957.799859 9420.141403 0.578279795 0.586528635 0.227651984 1.537108129 0.369533058 0.950692076 1.197575618 1.035731977 0.738608855 1 13.201533 -5.232710012 24.9996586 0.960053559 0.476391005 0.383682653 0.296471689 784.9984728 683087.4273 0.078224636 0.135457026 5.85E-06 5.232710012 -0.483662554 LS(ph)AKPAPPKPEPKPK ddPTM_HeLa_A485_30min_R1 2 LSAKPAPPKPEPKPK 15 3 P05204 P05204 HMGN2 Non-histone chromosomal protein HMG-17 1 0 LS(1)AKPAPPKPEPKPK;LS(1)AKPAPPKPEPKPK ; 153.06 2.21E-07 1900320000 1772640 707240 314210 2239300 989410 1286130 2251100 1954150 819250 3057400 TRUE FALSE FALSE 2166957.652 789945.5658 430449.3544 2361627.289 890900.8664 1353469.778 1770134.095 1474891.649 983665.9604 2295246.447 0.944106745 0.344165903 0.187539493 1.028921008 0.388150417 0.589683857 0.771217443 0.642585309 0.428566598 1 21.13021764 -11.04518793 2.484106401 1.536019821 0.586090404 0.188911266 0.253597228 27426467.43 8875132.957 83597434.53 0.0612665 9.01E-12 11.04518793 -0.949929417 LS(ph)AKPAPPKPEPKPK ddPTM_HeLa_A486_30min_R1 2 LSAKPAPPKPEPKPK 15 3 P05204 P05204 HMGN2 Non-histone chromosomal protein HMG-17 1 0 LS(1)AKPAPPKPEPKPK;LS(1)AKPAPPKPEPKPK ; 148.38 3.72E-07 2302000000 1461840 1198560 248580 823070 739990 1708040 2387800 2026530 851380 2548500 TRUE FALSE FALSE 1359372.565 1103581.741 344836.8332 1916148.556 647173.5541 1497319.391 1790347.184 1565133.358 925178.3039 1910339.012 0.711587083 0.577688951 0.180510805 1.003041106 0.338774191 0.783797735 0.937188202 0.819296129 0.484300586 1 20.86539725 -6.479548496 23.6022738 0.804474095 0.565930798 0.205240992 0.238985838 409.8198395 223231.4663 0.081811503 0.072143637 3.31E-07 6.479548496 -0.238543297 LS(ph)AKPPAK ddPTM_HeLa_A486_30min_R1 2 LSAKPPAK 8 1 P05114;A6NEL0;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 LS(1)AKPPAK;LS(1)AKPPAK ; 55.426 0.021235 499820000 1282740 1517760 470900 646720 841070 1823090 2050650 1732960 1190160 2107320 TRUE FALSE FALSE 1192826.55 1397487.17 653245.0911 1505596.843 735575.1579 1598175.692 1537555.68 1338402.838 1293324.027 1579633.356 0.755128743 0.884690846 0.413542224 0.953130572 0.465661956 1.01173838 0.973362379 0.84728702 0.818749504 1 20.59115831 -6.29037192 24.99531622 0.923378833 0.703768077 0.337618412 0.16473982 889.0002307 768019.5369 0.055455895 0.048915965 5.12E-07 6.29037192 -0.219610756 LS(ph)AMLVPVT(ph)PEVKPK ddPTM_HeLa_A485_30min_R1 1 LSAMLVPVTPEVKPK 15 1 Q5JSK8;Q5JSL0;Q5JSK6;P82970;Q5JSK7 Q5JSK8 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 2 0 LS(1)AMLVPVT(1)PEVKPK 109.89 0.00020825 133710000 265490 135230 92923 354920 163770 192440 290020 219180 131930 414160 TRUE FALSE FALSE 324547.3346 151043.9722 127299.0845 374308.3809 147464.4838 202515.8608 228054.8578 165425.7613 158407.1409 310917.534 1.043837349 0.485800753 0.409430381 1.203883152 0.474288091 0.651349116 0.733489858 0.532056714 0.509482816 1 18.24617245 LS(ph)ASPPKSGNLWPGLAPPHKK ddPTM_HeLa_A485_30min_R1 1 LSASPPKSGNLWPGLAPPHKK 21 2 H0YCV3;Q8TEY7-3;Q8TEY7-2;Q8TEY7 H0YCV3 USP33 Ubiquitin carboxyl-terminal hydrolase 33 1 0 LS(0.439)AS(0.439)PPKS(0.122)GNLWPGLAPPHKK 52.927 0.012834 156990000 93172 92919 44363 78635 115350 118890 190500 274210 65201 124520 TRUE FALSE FALSE 113897.79 103785.0688 60774.7198 82930.63094 103865.349 125114.8966 149798.1188 206959.5676 78286.24264 93479.45562 1.218425901 1.110244685 0.650139856 0.88715355 1.111103486 1.338421322 1.602471022 2.213957775 0.837470031 1 16.51236171 -6.272805337 2.462459388 1.508035414 0.959691761 0.211834608 0.376353045 0.376011347 4.50087424 0.142966733 0.131202106 5.34E-07 6.272805337 -0.548343653 LS(ph)ASPPKSGNLWPGLAPPHKK ddPTM_HeLa_A486_30min_R1 1 LSASPPKSGNLWPGLAPPHKK 21 2 H0YCV3;Q8TEY7-3;Q8TEY7-2;Q8TEY7 H0YCV3 USP33 Ubiquitin carboxyl-terminal hydrolase 33 1 0 LS(0.49)AS(0.49)PPKS(0.02)GNLWPGLAPPHKK 70.091 0.0023396 119440000 521880 305600 153520 220580 423590 396050 598070 594780 232310 638500 TRUE FALSE FALSE 485298.907 281383.143 212967.0554 513521.3875 370459.3924 347189.3777 448426.5603 459361.578 252446.8178 478615.4441 1.013964161 0.587910705 0.444964863 1.072931085 0.774023064 0.725403624 0.936924551 0.959771741 0.527452302 1 18.86850743 -5.26229531 24.99979209 0.849401746 0.672843004 0.138648049 0.198166983 153.76213 4491083.425 0.054297821 0.086119023 5.47E-06 5.26229531 -0.176558742 LS(ph)ASSSISSADLFEEPR ddPTM_HeLa_A485_30min_R1 1 LSASSSISSADLFEEPR 17 0 H0Y6A0;Q9NP61-2;Q9NP61 H0Y6A0 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 1 0 LS(0.997)AS(0.003)SSISSADLFEEPR 137.19 1.05E-07 0 15846 15264 14462 16481 24175 12709 21731 23138 11076 21409 TRUE FALSE FALSE 19370.88803 17048.99202 19812.09561 17381.3153 21768.05212 13374.42359 17087.99432 17463.36922 13298.8516 16072.1303 1.205247075 1.060779853 1.232698792 1.081456843 1.354397439 0.832150022 1.063206557 1.086562198 0.827447971 1 13.97227355 -6.267727179 24.99932015 0.973616819 1.176593083 0.50910283 0.109956435 467.4014486 1858310.296 0.036947208 0.033356691 5.40E-07 6.267727179 0.202976264 LS(ph)CEPVMEEK ddPTM_HeLa_A485_30min_R1 3 LSCEPVMEEK 10 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 LS(1)CEPVMEEK;LS(1)CEPVMEEK;LS(1)CEPVMEEK ;; 208.74 4.20E-14 263632000 473003 306856 210834 541280 388221 272738 490500 344001 250152 682250 TRUE FALSE FALSE 578220.8855 342740.1399 288830.2701 570848.7558 349568.3541 287018.1399 385700.668 259634.2154 300355.2119 512177.6309 1.128945996 0.669182173 0.563925976 1.114552299 0.682513903 0.560387886 0.753060354 0.506922208 0.586427821 1 18.96628472 -5.971712126 24.96439008 0.651293101 0.841249648 0.151817841 0.207182638 388.9309297 343234.5211 0.062911489 0.071333727 1.07E-06 5.971712126 0.189956548 LS(ph)CEPVMEEK ddPTM_HeLa_A486_30min_R1 4 LSCEPVMEEK 10 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 LS(1)CEPVMEEK;LS(1)CEPVMEEK;LS(1)CEPVMEEK;LS(1)CEPVMEEK ;;; 218.75 6.71E-17 491232000 458177 615490 301874 319113 511508 687320 858630 747270 418405 728830 TRUE FALSE FALSE 426061.1583 566716.3308 418767.6973 742911.1911 447349.897 602525.4466 643791.6923 577132.9338 454672.6823 546326.2241 0.779865838 1.037322219 0.766515827 1.359830735 0.818832919 1.102867518 1.178401592 1.056388854 0.832236606 1 19.05940315 -3.433486043 0.914626271 1.03888013 9.54E-11 0.145349375 0.170449586 15.95339992 3.467679312 0.05457274 23.6508956 0.000368565 3.433486043 -1.03888013 LS(ph)DVLK ddPTM_HeLa_A485_30min_R1 2 LSDVLK 6 0 Q14669-3;Q14669;Q14669-2;Q14669-4;Q92797;M0R3C7;A0A087WUE9;Q92797-2 Q14669-3;Q92797 TRIP12;SYMPK E3 ubiquitin-protein ligase TRIP12;Symplekin 1 0 LS(1)DVLK;LS(1)DVLK ; 100.02 0.012125 64892000 250490 158399 112139 372940 200648 166506 264590 202022 143055 466600 TRUE FALSE FALSE 306210.6363 176922.3852 153623.8826 393312.7679 180670.7806 175223.9967 208058.185 152475.7877 171764.8263 350285.2071 0.874175187 0.50508095 0.438568 1.122835792 0.515781931 0.500232362 0.593967946 0.435290399 0.490357066 1 18.41817054 -10.18963513 4.622394139 1.000070064 0.604136067 0.238746475 0.209608105 0.000154284 2.70E-05 0.203948266 0.04945587 6.46E-11 10.18963513 -0.395933997 LS(ph)DVLK ddPTM_HeLa_A486_30min_R1 3 LSDVLK 6 0 Q14669-3;Q14669;Q14669-2;Q14669-4;Q92797;M0R3C7;A0A087WUE9;Q92797-2 Q14669-3;Q92797 TRIP12;SYMPK E3 ubiquitin-protein ligase TRIP12;Symplekin 1 0 LS(1)DVLK;LS(1)DVLK;LS(1)DVLK ;; 124.98 0.005621 111729000 474760 502930 213985 225946 338580 563640 642300 538480 410680 793370 TRUE FALSE FALSE 441481.7757 463075.9952 296845.7227 526013.7067 296112.1393 494103.8275 481589.7464 415879.8589 446278.0731 594704.988 0.742354251 0.77866506 0.499147861 0.884495199 0.497914336 0.830838546 0.809796044 0.699304474 0.750419253 1 19.18181465 LS(ph)ELLR ddPTM_HeLa_A486_30min_R1 1 LSELLR 6 0 P08238;P07900;P07900-2;A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 P08238;P07900;A0A669KBG8;Q92538-3 HSP90AB1;HSP90AA1;GBF1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 LS(1)ELLR 93.374 0.012441 0 38890 27599 20120 22424 30573 37308 29066 35292 29437 35232 TRUE FALSE FALSE 36164.01183 25411.95473 27911.00283 52204.20525 26738.24926 32705.31828 21793.37937 27256.78202 31988.62286 26409.67788 1.369346949 0.962221306 1.05684753 1.976707383 1.012441325 1.238383839 0.825204286 1.03207552 1.211246234 1 14.68877908 LS(ph)FSDSESDNSADSSLPSREPPPPQKPPPPNSK ddPTM_HeLa_A486_30min_R1 1 LSFSDSESDNSADSSLPSREPPPPQKPPPPNSK 33 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 LS(0.617)FS(0.38)DS(0.001)ES(0.002)DNSADSSLPSREPPPPQKPPPPNSK 138.24 3.20E-07 149330000 51667 50580 33857 19106 59059 59279 69927 63216 42539 76550 TRUE FALSE FALSE 48045.41011 46571.85659 46967.33712 44479.73356 51651.26952 51965.75968 52430.52499 48823.0968 46226.31477 57381.38174 0.837299637 0.811619643 0.818511784 0.775159681 0.90013987 0.905620571 0.913720154 0.850852582 0.805597798 1 15.80829509 -5.773320293 24.99430205 0.889899324 0.811278832 0.421246467 0.048689964 235.4916723 495410.5317 0.015001916 0.01714412 1.69E-06 5.773320293 -0.078620492 LS(ph)GFSFK ddPTM_HeLa_A485_30min_R1 2 LSGFSFK 7 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LS(0.866)GFS(0.134)FK;LS(0.852)GFS(0.148)FK ; 132.84 0.0016378 642760000 1095070 581480 482730 1567740 814000 497430 799900 488580 679050 1818980 TRUE FALSE FALSE 1338664.544 649479.0278 661311.9151 1653381.666 732955.3019 523474.6656 628994.8304 368754.9889 815329.1064 1365541.762 0.980317542 0.47562004 0.484285383 1.210788064 0.536750557 0.383345775 0.460619256 0.270042996 0.597073725 1 20.38104201 -4.251578256 23.89640633 0.581294045 0.980317951 0.143569483 0.272948962 1450.31216 3514399.183 0.069701913 0.865304097 5.60E-05 4.251578256 0.399023906 LS(ph)GFSFK ddPTM_HeLa_A486_30min_R1 1 LSGFSFK 7 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LS(0.997)GFS(0.003)FK 186.54 0.00050239 480210000 694630 882780 394540 295400 575300 985410 902260 824830 729290 939690 TRUE FALSE FALSE 645940.0241 812825.2978 547316.4541 687706.1287 503140.5095 863840.1331 676505.0049 637034.2149 792505.4444 704385.5076 0.917026283 1.153949491 0.777012656 0.976320667 0.714297077 1.226374086 0.960418688 0.90438291 1.125101859 1 19.4260057 -6.264301034 24.99986253 1.032102125 0.91795008 0.191286598 0.137591219 533.8794166 4664031.46 0.046999044 0.043302363 5.44E-07 6.264301034 -0.114152045 LS(ph)GFSFKK ddPTM_HeLa_A485_30min_R1 2 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LS(0.998)GFS(0.002)FKK;LS(0.998)GFS(0.002)FKK ; 108.47 0.00076103 551290000 1592500 1224050 706430 1655760 1545590 1368350 2043690 1835780 1076540 2109850 TRUE FALSE FALSE 1946746.131 1367192 967767.854 1746209.976 1391705.633 1439994.69 1607038.936 1385552.077 1292591.703 1583903.224 1.229081488 0.863178999 0.611001884 1.102472645 0.878655723 0.909143102 1.014606771 0.874770665 0.816079975 1 20.59505276 -4.258155753 24.19251688 0.893761872 1.229081688 0.38732814 0.125378893 212.166471 1563042.817 0.031018849 0.21590672 5.52E-05 4.258155753 0.335319816 LS(ph)GFSFKK ddPTM_HeLa_A486_30min_R1 1 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LS(1)GFSFKK 123.79 0.00037085 292910000 935300 903270 375530 422360 731890 947360 1184200 1126800 633210 1271200 TRUE FALSE FALSE 869740.2999 831691.5955 520945.273 983275.4249 640089.5316 830484.3553 887900.6348 870252.2379 688097.1526 952883.2459 0.912745925 0.872815845 0.5467042 1.031894966 0.671739727 0.871548911 0.931804225 0.913283177 0.722121158 1 19.86193993 -6.49729765 24.73671029 0.887018748 0.805120283 0.077842046 0.139575609 1871.847438 1810064.763 0.0476531 0.041857233 3.18E-07 6.49729765 -0.081898465 LS(ph)GGHSLHETSTVLVETVTK ddPTM_HeLa_A485_30min_R1 2 LSGGHSLHETSTVLVETVTK 20 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LS(0.243)GGHS(0.189)LHET(0.189)S(0.189)T(0.189)VLVETVTK;LS(0.406)GGHS(0.406)LHET(0.062)S(0.062)T(0.062)VLVETVTK ; 95.957 0.00025443 1065990000 809030 935140 794650 474310 1296070 730280 939830 950260 963760 1043080 TRUE FALSE FALSE 988995.9324 1044496.488 1088624.103 500220.3543 1167028.72 768516.3316 739027.6428 717207.2451 1157177.792 783059.3525 1.262989746 1.333866309 1.390219145 0.638802605 1.490345165 0.981427946 0.94376964 0.915904066 1.477765112 1 19.57876214 LS(ph)GGHSLHETSTVLVETVTK ddPTM_HeLa_A486_30min_R1 3 LSGGHSLHETSTVLVETVTK 20 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LS(0.2)GGHS(0.2)LHET(0.2)S(0.2)T(0.2)VLVETVTK;LS(0.39)GGHS(0.39)LHET(0.055)S(0.071)T(0.094)VLVETVTK;LS(0.493)GGHS(0.493)LHET(0.005)S(0.005)T(0.005)VLVETVTK ;; 123.53 5.04E-07 1081010000 1305680 1498100 1024620 81800 1389530 1197320 1469450 1370460 1396810 622370 TRUE FALSE FALSE 1214158.575 1379385.1 1421380.304 190434.5339 1215242.191 1049606.832 1101778.068 1058436.175 1517886.615 466524.5011 2.60256122 2.956725953 3.046743099 0.408198355 2.604883962 2.24984289 2.361672464 2.268768677 3.253605356 1 18.83159333 LS(ph)GGQVLSEYTGPTSADLDHFPSVSQTK ddPTM_HeLa_A485_30min_R1 1 LSGGQVLSEYTGPTSADLDHFPSVSQTK 28 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 LS(0.998)GGQVLSEYT(0.001)GPT(0.001)S(0.001)ADLDHFPSVSQTK 55.492 0.020552 41667000 44575 42038 41896 45724 50122 43294 51512 43024 40013 61890 TRUE FALSE FALSE 54490.55497 46953.97842 57395.07384 48221.78634 45131.67769 45560.80689 40506.04039 32472.29654 48043.24208 46461.962 1.172799267 1.010589661 1.235313176 1.037876669 0.971368314 0.980604454 0.871810803 0.698900674 1.034033864 1 15.50376246 -5.917343538 1.348642424 0.886498927 1.128477659 0.459606528 0.102970774 0.356258181 1.350287324 0.041752691 0.050750639 1.21E-06 5.917343538 0.241978732 LS(ph)GGQVLSEYTGPTSADLDHFPSVSQTK ddPTM_HeLa_A486_30min_R1 1 LSGGQVLSEYTGPTSADLDHFPSVSQTK 28 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 LS(0.998)GGQVLSEYT(0.001)GPTSADLDHFPSVSQTK 78.618 0.0038528 61104000 47610 58783 33790 11215 46964 49280 56298 56022 46196 55144 TRUE FALSE FALSE 44272.78486 54124.821 46874.39293 26109.08677 41073.3372 43200.33464 42211.64494 43267.01355 50200.30648 41335.58347 1.071057456 1.309400193 1.13399616 0.631637069 0.993655677 1.045112492 1.021193882 1.046725603 1.21445743 1 15.33509663 -5.014110626 24.98601178 0.989641054 1.198096217 0.242157077 0.146523517 861.5552683 1525582.766 0.04059203 0.074159013 9.68E-06 5.014110626 0.208455162 LS(ph)GLSFKR ddPTM_HeLa_A485_30min_R1 1 LSGLSFKR 8 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 LS(0.505)GLS(0.495)FKR 53.683 0.02782 16635000000 3965300 3220300 2753200 3530400 3621500 2851400 4184300 4885300 2388400 4202600 TRUE FALSE FALSE 4847367.305 3596886.072 3771723.25 3723256.813 3260930.744 3000694.895 3290290.122 3687172.515 2867729.972 3154969.163 1.536423038 1.14007012 1.195486566 1.180124629 1.033585615 0.95110118 1.042891373 1.168687339 0.908956577 1 21.58919447 -1 0.603774485 1.028850965 31.66793302 0.756061848 0.083554237 88.13153567 0.67442833 0.037841249 3565.875807 0.1 1 30.63908206 LS(ph)GLSYGIAS(ph)GMNAILLSVK ddPTM_HeLa_A485_30min_R1 1 LSGLSYGIASGMNAILLSVK 20 0 A0A3B3ISG5 A0A3B3ISG5 2 0 LS(0.372)GLS(0.372)Y(0.345)GIAS(0.825)GMNAILLS(0.086)VK 48.477 0.019736 1846400000 805960 348320 164490 2061700 331740 909340 1026800 1251500 462230 1809300 TRUE FALSE FALSE 985243.0215 389052.994 225341.696 2174325.45 298710.8008 956951.6363 807415.7918 944567.6627 554995.3212 1358274.808 0.725363539 0.286431723 0.165902875 1.600799366 0.219919268 0.704534628 0.594442146 0.695417199 0.408603118 1 20.37334397 -11.36294444 2.051931228 3.210674099 0.602108498 0.087229635 0.387978335 17722525.87 1874553.896 181657303.2 0.098700971 4.34E-12 11.36294444 -2.608565601 LS(ph)GPAELR ddPTM_HeLa_A485_30min_R1 3 LSGPAELR 8 0 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8;Q96RT6 Q96PC5 MIA2;CTAGE1 Melanoma inhibitory activity protein 2;cTAGE family member 2 1 0 LS(1)GPAELR;LS(1)GPAELR;LS(1)GPAELR ;; 99.788 0.0022761 229301000 456010 413680 288943 444140 390780 422610 537980 589470 348955 796000 TRUE FALSE FALSE 557447.8513 462056.2775 395835.0396 468402.2436 351872.5711 444737.2061 423036.1781 444901.5582 418987.0677 597571.8493 0.932854939 0.773222966 0.662405768 0.783842552 0.588837261 0.744240557 0.707925212 0.744515591 0.701149273 1 19.18875266 -9.540508616 14.20319103 0.999987346 0.732999184 0.462291351 0.084742865 0 0 0.081653614 0.01980391 2.88E-10 9.540508616 -0.266988162 LS(ph)GPAELR ddPTM_HeLa_A486_30min_R1 2 LSGPAELR 8 0 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8;Q96RT6 Q96PC5 MIA2;CTAGE1 Melanoma inhibitory activity protein 2;cTAGE family member 2 1 0 LS(1)GPAELR;LS(1)GPAELR ; 99.973 0.0022442 139844000 317190 342260 214285 70560 289140 285060 276230 236360 306030 320820 TRUE FALSE FALSE 294956.619 315138.0711 297261.8908 164267.2459 252873.3651 249892.1955 207114.3323 182545.9877 332556.9268 240484.5838 1.226509468 1.310429409 1.236095412 0.683067677 1.051515906 1.039119396 0.861237461 0.759075633 1.382861727 1 17.87558489 -5.045080816 20.28292865 0.96002774 1.269667843 0.351419425 0.1803841 49.72520603 22372.49455 0.047315369 0.081973783 9.01E-06 5.045080816 0.309640103 LS(ph)GVMVPAPIQDLEALR ddPTM_HeLa_A485_30min_R1 1 LSGVMVPAPIQDLEALR 17 0 A0A1W2PQD2;Q9UBB4-2;Q9UBB4 A0A1W2PQD2 ATXN10 Ataxin-10 1 0 LS(1)GVMVPAPIQDLEALR 122.1 0.00029581 17129000 14433 12161 14579 17900 18269 12920 16161 15534 15515 21108 TRUE FALSE FALSE 17643.57106 13583.12316 19972.37878 18877.83167 16450.07421 13596.47122 12708.07033 11724.26214 18628.71819 15846.16406 1.113428523 0.857186831 1.260392023 1.191318706 1.03811081 0.858029184 0.801965086 0.739880144 1.175597963 1 13.95184602 -6.117723143 4.399207224 0.892710078 1.10047808 0.265477358 0.147665915 0.301909835 9.498467237 0.050539547 0.050963711 7.63E-07 6.117723143 0.207768002 LS(ph)GVMVPAPIQDLEALR ddPTM_HeLa_A486_30min_R1 1 LSGVMVPAPIQDLEALR 17 0 A0A1W2PQD2;Q9UBB4-2;Q9UBB4 A0A1W2PQD2 ATXN10 Ataxin-10 1 0 LS(1)GVMVPAPIQDLEALR 127.32 1.65E-05 77271000 80716 96033 65866 37654 88248 94206 103040 105770 72483 86501 TRUE FALSE FALSE 75058.22522 88422.99533 91371.07915 87660.41493 77179.11296 82583.82154 77258.30215 81688.47994 78765.8848 64840.58657 1.15758091 1.363698264 1.409164907 1.351937414 1.190290172 1.273643961 1.191511463 1.25983561 1.214762064 1 15.98460952 -9.466801207 0.27327733 0.877844764 1.328324698 0.565071555 0.074557499 7.126564841 0.632521053 0.887863729 0.114579481 3.41E-10 9.466801207 0.450479934 LS(ph)KSDEQLSSLDRDSGQCSR ddPTM_HeLa_A485_30min_R1 1 LSKSDEQLSSLDRDSGQCSR 20 2 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 LS(0.549)KS(0.451)DEQLSSLDRDSGQCSR 61.37 0.0075111 300740000 56813 79727 65662 74834 119340 82168 137320 150180 70963 111950 TRUE FALSE FALSE 69450.85585 89050.37912 89953.10622 78921.99193 107458.0906 86470.18942 107980.4602 113348.1195 85204.62319 84042.92529 0.826373613 1.059582098 1.070323361 0.939067645 1.278609594 1.028881243 1.284825104 1.348693172 1.013822673 1 16.35883876 -5.751160502 24.9991526 1.176344749 0.986853234 0.317992184 0.130950535 247.9387002 603006.4403 0.038025239 0.048540135 1.77E-06 5.751160502 -0.189491514 LS(ph)LDGQGR ddPTM_HeLa_A486_30min_R1 1 LSLDGQGR 8 0 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 1 0 LS(1)LDGQGR 65.627 0.022494 116970000 153930 240340 252280 51663 265450 185130 178200 194440 223380 160520 TRUE FALSE FALSE 143140.3019 221294.5831 349969.5723 120274.0749 232154.7858 162290.5429 133612.4752 150170.2566 242742.7583 120324.7472 1.189616477 1.839144384 2.908541929 0.999578871 1.929401816 1.34877111 1.110432212 1.248041322 2.017396786 1 16.87657387 LS(ph)LDLSHR ddPTM_HeLa_A485_30min_R1 3 LSLDLSHR 8 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 LS(1)LDLSHR;LS(1)LDLSHR;LS(1)LDLSHR ;; 167.09 2.18E-05 237591000 397353 366483 315989 415786 342073 285770 359597 287794 305067 534190 TRUE FALSE FALSE 485742.804 409339.9989 432886.4805 438499.3364 308015.011 300732.4753 282766.1633 217212.0703 366291.1487 401026.264 1.211249356 1.020731148 1.079446708 1.093442938 0.768066929 0.749907181 0.705106345 0.54164051 0.913384438 1 18.6133372 -5.769295528 6.22571569 0.750222023 1.095220051 0.612225086 0.124060133 0.094138627 14.25138418 0.036721044 0.044048619 1.70E-06 5.769295528 0.344998028 LS(ph)LDLSHR ddPTM_HeLa_A486_30min_R1 2 LSLDLSHR 8 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 LS(1)LDLSHR;LS(1)LDLSHR ; 156.48 8.14E-05 406980000 576880 668600 383250 179283 455130 541330 572330 565860 514610 639940 TRUE FALSE FALSE 536443.691 615617.701 531654.6638 417379.8845 398043.3515 474546.2084 429126.9805 437026.0306 559216.8091 479694.8587 1.11830194 1.283352719 1.108318453 0.870094555 0.829784485 0.989266822 0.894583239 0.911050062 1.165776116 1 18.87175745 -5.064643041 4.688474886 0.943036673 1.201202135 0.536876417 0.095172191 0.147525593 6.390985432 0.026016217 0.048153156 8.62E-06 5.064643041 0.258165462 LS(ph)LEGDHSTPPSAYGSVK ddPTM_HeLa_A485_30min_R1 3 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LS(1)LEGDHSTPPSAYGSVK;LS(0.999)LEGDHS(0.001)TPPSAYGSVK;LS(1)LEGDHSTPPSAYGSVK ;; 270.35 3.15E-59 7627170000 1619200 1451180 993680 1803690 1227940 1539020 2318580 1759280 1573720 3313230 TRUE FALSE FALSE 1979385.454 1620882.877 1361283.582 1902221.018 1105681.982 1619600.707 1823196.442 1327813.822 1889551.169 2487302.736 0.795795954 0.651662885 0.547293083 0.764772615 0.444530521 0.651147399 0.733001422 0.533836835 0.759678804 1 21.24615068 -8.041864909 7.123990163 0.999989864 0.63889198 0.530400701 0.103369836 0.307355864 50.59528469 0.09570697 0.024778921 9.08E-09 8.041864909 -0.361097885 LS(ph)LEGDHSTPPSAYGSVK ddPTM_HeLa_A486_30min_R1 5 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LS(1)LEGDHSTPPSAYGSVK;LS(1)LEGDHSTPPSAYGSVK;LS(0.999)LEGDHS(0.001)TPPSAYGSVK;LS(1)LEGDHSTPPSAYGSVK;LS(1)LEGDHSTPPSAYGSVK ;;;; 291.99 1.15E-78 26342300000 3443030 4119010 1917400 275568 2608160 3780790 3976790 3665160 3720310 4189840 TRUE FALSE FALSE 3201691.377 3792604.646 2659868.63 641536.2304 2281020.253 3314354.57 2981755.08 2830683.078 4042789.466 3140676.793 1.019427209 1.207575595 0.846909378 0.204266874 0.726283029 1.055299475 0.949398896 0.901297161 1.287235119 1 21.58264405 -6.267328268 24.29593932 1.026899263 0.79289656 0.173538491 0.258495958 715.5600108 2952193.413 0.100646718 0.091182036 5.40E-07 6.267328268 -0.234002703 LS(ph)LGLSR ddPTM_HeLa_A485_30min_R1 6 LSLGLSR 7 0 Q9NR12-2;Q9NR12;D6RAN1;H0Y8W6;D6RF83;H7BYK4;D6RH06;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR ;;;;; 170.69 0.0005367 1261189000 1273942 1153444 1193531 1372513 1618430 1163041 1431211 1207040 1270728 1732840 TRUE FALSE FALSE 1557326.003 1288329.242 1635067.784 1447489.91 1457293.427 1223936.028 1125421.078 911011.5474 1525751.454 1300874.879 1.197137425 0.990356001 1.256898577 1.112704945 1.12024104 0.940856072 0.865126306 0.700306818 1.172865645 1 20.31105078 -6.282635821 3.682523735 0.908735187 1.135266359 0.372480024 0.12792664 0.23261113 6.91984721 0.044741845 0.041016345 5.22E-07 6.282635821 0.226531172 LS(ph)LGLSR ddPTM_HeLa_A486_30min_R1 6 LSLGLSR 7 0 Q9NR12-2;Q9NR12;D6RAN1;H0Y8W6;D6RF83;H7BYK4;D6RH06;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR;LS(1)LGLSR ;;;;; 172.28 0.0005367 1678769000 987664 1336086 1056896 486421 1336784 1320636 1431959 1363687 1071896 1149142 TRUE FALSE FALSE 918433.8539 1230209.679 1466154.436 1132412.67 1169112.086 1157709.358 1073667.712 1053205.239 1164808.808 861389.3635 1.066223816 1.428169109 1.702080961 1.314635075 1.357239984 1.344002383 1.246437161 1.222681964 1.352244244 1 19.71630598 -8.759958522 0.377776868 0.95012238 1.397943957 0.312149939 0.152846196 4.21023108 0.979585066 0.543372721 0.128364366 1.74E-09 8.759958522 0.447821578 LS(ph)LIKKRFAT(ph)GR ddPTM_HeLa_A485_30min_R1 2 LSLIKKRFATGR 12 3 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 2 0 LS(1)LIKKRFAT(1)GR;LS(1)LIKKRFAT(1)GR ; 68.944 0.007012 1852660000 1401170 1336920 908920 1200800 1157970 1427220 1866140 1606110 967660 1490060 TRUE FALSE FALSE 1712855.433 1493261.164 1245167.331 1266396.663 1042678.441 1501947.032 1467423.944 1212209.004 1161860.486 1118615.465 1.5312281 1.334919114 1.113132592 1.132110813 0.932115167 1.342683952 1.311821614 1.083669092 1.038659417 1 20.09328275 -4.502675264 2.468558337 1.130086073 1.539928615 0.542742067 0.121158574 0.286401937 2.985063558 0.034061761 0.197100421 3.14E-05 4.502675264 0.409842542 LS(ph)LIKKRFAT(ph)GR ddPTM_HeLa_A486_30min_R1 2 LSLIKKRFATGR 12 3 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 2 0 LS(1)LIKKRFAT(1)GR;LS(1)LIKKRFAT(1)GR ; 60.209 0.016118 1200970000 1066440 894140 480781 342491 688500 860000 1068480 886140 636490 1364820 TRUE FALSE FALSE 991688.0631 823285.09 666952.279 797336.3565 602141.91 753901.9438 801135.0028 684385.2663 691661.4657 1023060.189 0.969335015 0.804727913 0.651918906 0.779364074 0.588569389 0.736908691 0.783077097 0.668958947 0.676071138 1 19.96445959 -4.365459997 3.073989177 0.721833547 0.982880607 0.297979128 0.106286203 0.317880965 4.787392696 0.025152668 0.173389084 4.31E-05 4.365459997 0.261047059 LS(ph)LQGHPTDLQTSNVK ddPTM_HeLa_A485_30min_R1 2 LSLQGHPTDLQTSNVK 16 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 LS(1)LQGHPTDLQTSNVK;LS(1)LQGHPTDLQTSNVK ; 143.04 6.37E-08 343930000 586000 514950 400110 507760 742720 437790 552150 496270 450260 675320 TRUE FALSE FALSE 716353.6783 575168.923 548127.339 535497.6431 668772.189 460712.0074 434178.6418 374559.0044 540623.052 506975.1523 1.412995637 1.134511071 1.081171999 1.056260135 1.319141946 0.908746721 0.856410102 0.738811365 1.066369919 1 18.95155551 -6.311303293 10.3289893 0.893877505 1.182394315 0.547206921 0.129231352 0.561391179 114.6250063 0.045568658 0.040217673 4.88E-07 6.311303293 0.288516811 LS(ph)LQGHPTDLQTSNVK ddPTM_HeLa_A486_30min_R1 2 LSLQGHPTDLQTSNVK 16 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 LS(0.999)LQGHPT(0.001)DLQTSNVK;LS(1)LQGHPTDLQTSNVK ; 212.65 5.31E-26 627690000 780810 771940 435010 85785 743730 790730 867470 808690 639640 683150 TRUE FALSE FALSE 726079.2511 710768.663 603457.522 199711.8153 650444.4484 693177.7722 650419.8308 624568.9406 695084.5102 512084.7934 1.417888718 1.387990177 1.17843281 0.389997551 1.270188954 1.353638657 1.270140881 1.219659222 1.357362138 1 18.96602319 LS(ph)NGLAR ddPTM_HeLa_A486_30min_R1 1 LSNGLAR 7 0 Q16643;Q16643-2;D6RCR4;D6R9W4;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 LS(1)NGLAR 97.284 0.0051689 185700000 181220 217280 180960 67458 193720 206550 221880 214580 196540 205390 TRUE FALSE FALSE 168517.4138 200061.9415 251032.5583 157045.6331 169421.8312 181067.961 166363.2772 165724.8182 213576.2454 153959.0071 1.094560279 1.299449413 1.63051557 1.020048363 1.100434683 1.176079038 1.080568655 1.076421713 1.387227999 1 17.23218675 -5.310450379 24.99978498 1.123160227 1.337304207 0.292096674 0.157853853 478.1525601 243897.51 0.044370048 0.065811584 4.89E-06 5.310450379 0.214143981 LS(ph)NGSFSAPSLTNSR ddPTM_HeLa_A485_30min_R1 2 LSNGSFSAPSLTNSR 15 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 1 0 LS(1)NGSFSAPSLTNSR;LS(1)NGSFSAPSLTNSR ; 138.56 4.91E-06 610210000 545820 635100 529240 790900 835400 626110 962660 835280 546680 1111850 TRUE FALSE FALSE 667235.7759 709369.4204 725027.8995 834104.8643 752224.6427 658892.1514 756979.8268 630426.2703 656393.6616 834686.2571 0.799385123 0.849863544 0.868623262 0.99930346 0.901206455 0.789389002 0.906903427 0.755285312 0.786395674 1 19.67087449 -6.234396514 24.25994975 0.836006797 0.887385326 0.037084477 0.080802954 1406.193356 1261485.295 0.026824227 0.026816521 5.83E-07 6.234396514 0.051378529 LS(ph)NGSFSAPSLTNSR ddPTM_HeLa_A486_30min_R1 4 LSNGSFSAPSLTNSR 15 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 1 0 LS(0.998)NGS(0.002)FSAPSLTNSR;LS(0.994)NGS(0.006)FSAPSLTNSR;LS(1)NGSFSAPSLTNSR;LS(0.997)NGS(0.003)FSAPSLTNSR ;;; 204.71 1.97E-25 1315350000 1166690 1186030 826610 461093 1316510 1301570 1374510 1358770 1035120 1548240 TRUE FALSE FALSE 1084911.056 1092044.663 1146695.529 1073447.806 1151381.04 1140995.527 1030593.06 1049407.733 1124845.035 1160550.627 0.934824411 0.940971155 0.988061618 0.924946988 0.992098934 0.983150154 0.888020769 0.904232619 0.969233922 1 20.14637803 LS(ph)PANQR ddPTM_HeLa_A485_30min_R1 3 LSPANQR 7 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LS(1)PANQR;LS(1)PANQR;LS(1)PANQR ;; 131.5 0.001659 2230970000 2138070 2156250 2088790 2769250 2543830 1967950 2653640 2336160 2080720 3769380 TRUE FALSE FALSE 2613676.295 2408404.681 2861520.343 2920527.115 2290557.353 2070988.819 2086668.136 1763213.097 2498301.419 2829742.936 0.923644428 0.851103699 1.011229786 1.032082129 0.809457751 0.731864648 0.737405546 0.623100097 0.882872217 1 21.43223957 -5.905836171 6.041388459 0.768213642 0.950319202 0.332944968 0.105500773 0.212788283 11.28392111 0.032374771 0.036844251 1.24E-06 5.905836171 0.18210556 LS(ph)PANQR ddPTM_HeLa_A486_30min_R1 4 LSPANQR 7 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 LS(1)PANQR;LS(1)PANQR;LS(1)PANQR;LS(1)PANQR ;;; 150.27 0.00091902 4186430000 4091010 5136590 3439320 1522470 4368360 4826800 4802640 4693990 4119380 5025890 TRUE FALSE FALSE 3804251.325 4729547.901 4771116.812 3544387.101 3820439.555 4231318.491 3600968.675 3625270.946 4476451.175 3767374.431 1.009788487 1.255396295 1.266430215 0.940810946 1.014085439 1.12314785 0.95582978 0.962280499 1.188215097 1 21.845128 -5.260757097 24.99995058 1.025352184 1.185024128 0.333592794 0.097520949 68.18731669 2498451.731 0.026734461 0.042969397 5.49E-06 5.260757097 0.159671944 LS(ph)PDFAEELR ddPTM_HeLa_A486_30min_R1 2 LSPDFAEELR 10 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;Q14160-2;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 LS(1)PDFAEELR;LS(1)PDFAEELR ; 178.49 1.78E-09 85487000 124199 144084 103921 39738 117748 157795 125740 106715 145319 194077 TRUE FALSE FALSE 115493.2915 132666.2591 144161.9943 92512.07225 102978.9479 138327.8572 94278.52206 82418.32407 157915.3679 145478.856 0.793883693 0.911928116 0.990948089 0.635914213 0.707861958 0.950845099 0.648056526 0.566531291 1.085486732 1 17.15044996 -4.026880832 20.14774895 0.814667158 0.787931422 0 0.173049436 9416.989269 156.7748017 0.041382176 2607.059693 9.40E-05 4.026880832 -0.026735736 LS(ph)PDQRK ddPTM_HeLa_A485_30min_R1 2 LSPDQRK 7 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 LS(1)PDQRK;LS(1)PDQRK ; 57.598 0.024475 543180000 283840 261590 193390 332570 312610 320830 430330 383790 243120 465050 TRUE FALSE FALSE 346979.2288 292180.675 264933.0086 350737.457 281485.4508 337628.1627 338386.48 289664.9007 291911.954 349121.5936 0.993863557 0.836902329 0.758855979 1.004628368 0.806267661 0.967079003 0.969251075 0.829696318 0.836132623 1 18.41337007 -5.265725196 24.92762032 0.908810794 0.860576797 0.067957721 0.086760575 1129.243433 6568035.626 0.02420687 0.037340592 5.42E-06 5.265725196 -0.048233997 LS(ph)PENNQVLTK ddPTM_HeLa_A485_30min_R1 1 LSPENNQVLTK 11 0 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 0 LS(1)PENNQVLTK 150.34 6.41E-07 575430000 231690 189190 155150 348590 243980 176960 263850 184610 148960 448200 TRUE FALSE FALSE 283228.6412 211314.1248 212546.4413 367632.589 219688.4945 186225.352 207476.292 139334.108 178854.9057 336471.9885 0.841759941 0.628028876 0.63169134 1.092609791 0.652917634 0.553464652 0.616622777 0.414103143 0.53155957 1 18.36012688 -5.98741796 24.97380201 0.588019873 0.786719836 0.153622257 0.187347096 370.5855241 735562.1309 0.057071767 0.064674593 1.03E-06 5.98741796 0.198699962 LS(ph)PENNQVLTK ddPTM_HeLa_A486_30min_R1 2 LSPENNQVLTK 11 0 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 0 LS(1)PENNQVLTK;LS(1)PENNQVLTK ; 192.91 4.94E-11 622780000 547855 570640 263910 181186 413811 552570 599410 554300 480625 688140 TRUE FALSE FALSE 509453.1936 525420.4082 366103.0198 421810.1646 361906.9657 484399.5315 449431.2781 428097.9903 522285.962 515825.265 0.987646841 1.018601538 0.709742319 0.817738473 0.701607677 0.939076785 0.871285896 0.82992831 1.012524972 1 18.97652291 -7.766122508 24.82656064 1.006262597 0.856164536 0.259128565 0.099170112 162.8865986 863451.5906 0.090208091 0.026324754 1.71E-08 7.766122508 -0.150098061 LS(ph)PEPGR ddPTM_HeLa_A485_30min_R1 1 LSPEPGR 7 0 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 0 LS(1)PEPGR 85.67 0.0079497 267210000 485180 412940 365580 639640 509580 409020 516300 387450 427220 768250 TRUE FALSE FALSE 593106.6171 461229.7409 500823.2551 674581.9135 458844.426 430435.6547 405988.2872 292427.28 512959.1353 576739.4136 1.028378854 0.799719475 0.868370088 1.169647674 0.795583612 0.746326061 0.703937129 0.507035367 0.889412312 1 19.13756009 -5.982450077 24.94106649 0.738500787 0.951979373 0.26850381 0.151452371 289.9291091 412030.516 0.046355946 0.052552253 1.04E-06 5.982450077 0.213478586 LS(ph)PERS(ph)SDSESNENEPHLPHGVSQR ddPTM_HeLa_A486_30min_R1 3 LSPERSSDSESNENEPHLPHGVSQR 25 1 E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;V9GYS7 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 2 0 LS(0.92)PERS(0.604)S(0.476)DSESNENEPHLPHGVSQR;LS(1)PERS(0.687)S(0.314)DSESNENEPHLPHGVSQR;LS(0.947)PERS(0.553)S(0.496)DS(0.002)ES(0.002)NENEPHLPHGVSQR ;; 137.25 5.14E-06 2700850000 1962440 2189820 1402420 194755 2435840 1917270 1923990 2108560 1881410 947550 TRUE FALSE FALSE 1824883.09 2016290.688 1945474.582 453399.4824 2130314.234 1680736.721 1442587.352 1628486.918 2044492.134 710277.3125 2.569254371 2.838737283 2.73903523 0.638341496 2.999271125 2.366310582 2.031019894 2.292748042 2.878442121 1 19.43802288 -10.40893898 3.236186681 0.9834955 2.351910121 0.288436667 0.646019566 59370289.16 80160047.62 9110683.865 0.15799534 3.90E-11 10.40893898 1.368414621 LS(ph)PEVAPPAHR ddPTM_HeLa_A485_30min_R1 4 LSPEVAPPAHR 11 0 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 LS(1)PEVAPPAHR;LS(1)PEVAPPAHR;LS(1)PEVAPPAHR;LS(1)PEVAPPAHR ;;; 141.38 9.64E-07 4470170000 3206040 3080630 2726560 3698810 3410560 2718950 3637220 2972420 2902920 4753040 TRUE FALSE FALSE 3919212.537 3440882.881 3735228.006 3900866.624 3070992.671 2861310.018 2860098.234 2243429.334 3485509.417 3568194.601 1.098374101 0.96432041 1.046811742 1.09323259 0.860657283 0.801892928 0.801553321 0.628729536 0.976827165 1 21.76676287 -5.857225495 5.073516143 0.817981656 1.043714747 0.478993256 0.103426914 0.165836068 6.966159332 0.031352579 0.036015508 1.39E-06 5.857225495 0.225733091 LS(ph)PEVAPPAHR ddPTM_HeLa_A486_30min_R1 4 LSPEVAPPAHR 11 0 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 LS(1)PEVAPPAHR;LS(1)PEVAPPAHR;LS(1)PEVAPPAHR;LS(1)PEVAPPAHR ;;; 139.89 5.08E-06 3912180000 2633060 3136400 1914050 830162 2300510 2704640 2972140 2580130 2523820 3108920 TRUE FALSE FALSE 2448496.091 2887860.241 2655221.42 1932659.09 2011958.584 2370969.016 2228479.136 1992690.723 2742586.75 2330426.196 1.050664507 1.239198326 1.139371598 0.829315725 0.863343618 1.017397169 0.956253899 0.855075662 1.176860591 1 21.15216239 -5.165960668 7.789690687 0.949653811 1.154818852 0.401039181 0.103801061 0.267545431 19.45732138 0.027604648 0.048057638 6.82E-06 5.165960668 0.205165041 LS(ph)PFMADIR ddPTM_HeLa_A486_30min_R1 1 LSPFMADIR 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 LS(1)PFMADIR 67.563 0.011602 0 17054 20517 13138 7010.6 16256 19142 16215 16463 13721 20731 TRUE FALSE FALSE 15858.60267 18891.1582 18225.38545 16321.0311 14217.0209 16780.45466 12157.8355 12714.73428 14910.34733 15539.82266 1.020513748 1.215661118 1.17281811 1.050271387 0.91487665 1.07983566 0.782366425 0.818203306 0.959492759 1 13.92368242 -5.733375149 1.383938283 0.900999272 1.14727706 0.495586929 0.093947722 0.327635461 1.310190333 0.03639789 0.052355374 1.85E-06 5.733375149 0.246277788 LS(ph)PGESAYQK ddPTM_HeLa_A485_30min_R1 6 LSPGESAYQK 10 0 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK ;;;;; 297.83 5.32E-43 4275500000 4136430 3434520 2724880 5310010 4572210 3687030 5280910 4324660 3355730 6906060 TRUE FALSE FALSE 5056564.583 3836157.238 3732926.504 5600082.401 4116984.718 3880077.19 4152600.437 3264030.354 4029194.23 5184506.339 0.975322288 0.739927196 0.720015805 1.080157306 0.794093873 0.748398581 0.800963518 0.629573992 0.777160633 1 22.30577519 -5.981373305 24.99922823 0.768962156 0.867528846 0.08267135 0.1300747 555.1138383 745024.9276 0.039977294 0.045323363 1.04E-06 5.981373305 0.09856669 LS(ph)PGESAYQK ddPTM_HeLa_A486_30min_R1 6 LSPGESAYQK 10 0 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK;LS(1)PGESAYQK ;;;;; 271.21 1.08E-33 5449920000 4703220 5172490 2715910 2006420 4378980 5317950 6008800 5833970 3974790 6073590 TRUE FALSE FALSE 4373548.565 4762603.055 3767583.087 4671047.159 3829727.496 4661875.398 4505334.685 4505702.386 4319327.998 4552723.532 0.960644444 1.046099773 0.827544888 1.025989636 0.84119483 1.02397507 0.9895911 0.989671864 0.948734964 1 22.11829842 LS(ph)PGKETR ddPTM_HeLa_A485_30min_R1 3 LSPGKETR 8 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 LS(1)PGKETR;LS(1)PGKETR;LS(1)PGKETR ;; 136.96 0.00022613 1541750000 3822270 3149100 2386170 5797200 4502090 3973940 6432900 5375800 3157140 8042900 TRUE FALSE FALSE 4672520.775 3517359.851 3268913.58 6113886.357 4053846.112 4182009.354 5058458.363 4057376.621 3790749.039 6037953.049 0.773858415 0.582541769 0.541394336 1.012576002 0.67139411 0.692620383 0.837777028 0.671978829 0.627820225 1 22.52562811 -10.85377561 2.410389991 1.127408596 0.713122519 0.30879852 0.129063077 32251020.04 18510103.42 23601204.65 0.032354981 1.40E-11 10.85377561 -0.414286077 LS(ph)PGKETR ddPTM_HeLa_A486_30min_R1 4 LSPGKETR 8 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 LS(1)PGKETR;LS(1)PGKETR;LS(1)PGKETR;LS(1)PGKETR ;;; 121.9 0.0003343 1535030000 4051870 3761620 1766550 2268840 3434160 4548640 5915130 5479490 2923660 6909600 TRUE FALSE FALSE 3767854.837 3463535.532 2450605.47 5281974.181 3003415.631 3987475.044 4435101.91 4231929.743 3177085.203 5179391.186 0.727470604 0.668714798 0.473145469 1.019805995 0.579878121 0.769873312 0.856297922 0.817070886 0.613409007 1 22.30435109 -14 0.137844426 1.886886199 0.631757936 0.23621701 0.146964474 205.2904691 1.742762568 50.55546111 0.927670974 1.00E-14 14 -1.255128263 LS(ph)PGSYPTVIQQQNATSQR ddPTM_HeLa_A486_30min_R1 1 LSPGSYPTVIQQQNATSQR 19 0 Q13469-5;Q13469-3;Q13469-4;Q13469-2;Q13469 Q13469-5 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 0 LS(1)PGSYPTVIQQQNATSQR 156.15 5.83E-09 96307000 27843 37298 28922 11764 41895 40420 37521 38251 28433 41632 TRUE FALSE FALSE 25891.34948 34342.37064 40121.37296 27387.18652 36640.13844 35433.39136 28132.84894 29542.08231 30897.59533 31207.07622 0.829662776 1.10046742 1.285649853 0.877595399 1.174097124 1.135428103 0.901489417 0.946646911 0.99008299 1 14.92958558 -6.763463397 24.9999932 0.955108737 1.074841447 0.143064812 0.127993351 101.9436551 1259139.928 0.051599236 0.036741603 1.72E-07 6.763463397 0.11973271 LS(ph)PHKVQGR ddPTM_HeLa_A485_30min_R1 6 LSPHKVQGR 9 1 Q9GZP8;Q9GZP8-2;K7EQZ3 Q9GZP8 IMUP Immortalization up-regulated protein 1 0 LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR ;;;;; 78.705 0.0044065 33780900000 7416340 6288630 4847870 9078320 7292720 6037750 8557260 6958070 5688220 11032730 TRUE FALSE FALSE 9066079.247 7024030.575 6641298.85 9574245.634 6566631.191 6353877.254 6728931.495 5251592.423 6829793.579 8282473.453 1.094610118 0.848059534 0.8018497 1.155964542 0.792834559 0.767147313 0.812430192 0.634060882 0.824607965 1 22.98163024 -5.948296803 24.99927966 0.784510926 0.956260358 0.282206492 0.128969763 128.5884651 62173.74974 0.038983991 0.044203684 1.13E-06 5.948296803 0.171749433 LS(ph)PHKVQGR ddPTM_HeLa_A486_30min_R1 9 LSPHKVQGR 9 1 Q9GZP8;Q9GZP8-2;K7EQZ3 Q9GZP8 IMUP Immortalization up-regulated protein 1 0 LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR;LS(1)PHKVQGR ;;;;;;;; 113.22 0.0004681 43115320000 8625240 9334890 4292010 3912360 6852540 8807060 10114010 9469880 6476550 11181130 TRUE FALSE FALSE 8020655.217 8595159.319 5953991.216 9108171.8 5993030.536 7720534.481 7583377.723 7313795.05 7037942.569 8381302.271 0.956970046 1.025515969 0.710389749 1.08672513 0.715047655 0.92116168 0.904797068 0.872632297 0.839719454 1 22.99874299 LS(ph)PIPEEVPK ddPTM_HeLa_A485_30min_R1 3 LSPIPEEVPK 10 0 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LS(1)PIPEEVPK;LS(1)PIPEEVPK;LS(1)PIPEEVPK ;; 184.55 1.20E-09 1995911000 3431910 2681428 1918436 5462720 3080017 2745692 4126100 2948479 2661921 6748690 TRUE FALSE FALSE 4195326.54 2994997.679 2628145.309 5761134.561 2773359.693 2889452.187 3244525.028 2225359.902 3196144.128 5066365.783 0.82807415 0.591153069 0.518743695 1.13713356 0.547406131 0.570320484 0.640404812 0.439241854 0.630855383 1 22.27251981 -9.960940379 4.352329506 1.000009695 0.651600089 0.232430405 0.18743131 184832916.9 375318268.5 28751.80783 0.048879176 1.09E-10 9.960940379 -0.348409606 LS(ph)PIPEEVPK ddPTM_HeLa_A486_30min_R1 2 LSPIPEEVPK 10 0 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LS(1)PIPEEVPK;LS(1)PIPEEVPK ; 153.95 2.56E-06 1443900000 1829540 2095700 813900 759220 1382740 2150730 2382440 2042160 1520900 2874900 TRUE FALSE FALSE 1701298.694 1929629.1 1129063.877 1767502.529 1209303.856 1885394.8 1786328.313 1577204.748 1652732.837 2155006.328 0.789463433 0.895416907 0.523926015 0.82018438 0.561160234 0.87489061 0.828920217 0.731879405 0.766927139 1 21.03926067 LS(ph)PISHGNTIALFFR ddPTM_HeLa_A485_30min_R1 2 LSPISHGNTIALFFR 15 0 Q9BQ70 Q9BQ70 TCF25 Transcription factor 25 1 0 LS(0.98)PIS(0.02)HGNTIALFFR;LS(0.982)PIS(0.018)HGNTIALFFR ; 273.43 2.69E-58 383820000 147886 142068 141610 196234 143018 136465 181042 139544 119761 261640 TRUE FALSE FALSE 180782.7305 158681.6168 193997.4319 206953.7665 128778.6258 143610.0964 142360.8977 105320.6152 143795.9342 196417.9631 0.920398153 0.807877316 0.98767663 1.053639714 0.655635685 0.731145431 0.724785531 0.536206636 0.732091566 1 17.58356735 -5.771834469 24.99844131 0.706586584 0.936023535 0.407467579 0.123478293 190.1088444 457178.4383 0.037427654 0.042893694 1.69E-06 5.771834469 0.229436951 LS(ph)PISHGNTIALFFR ddPTM_HeLa_A486_30min_R1 2 LSPISHGNTIALFFR 15 0 Q9BQ70 Q9BQ70 TCF25 Transcription factor 25 1 0 LS(0.999)PIS(0.001)HGNTIALFFR;LS(1)PISHGNTIALFFR ; 229.96 3.18E-34 419290000 141575 192127 116726 56745 145074 165804 169325 164962 158059 188121 TRUE FALSE FALSE 131651.3236 176902.1568 161925.4332 132105.2277 126877.4662 145348.7883 126958.0941 127403.7537 171759.6814 141014.2771 0.933602797 1.2544982 1.148291056 0.93682165 0.89974908 1.030738101 0.900320851 0.903481238 1.218030435 1 17.10548171 -5.257663549 24.91529843 0.975071388 1.126367443 0.197800962 0.11604092 425.0374065 2804651.004 0.03106885 0.051240255 5.53E-06 5.257663549 0.151296055 LS(ph)PLPVVSR ddPTM_HeLa_A485_30min_R1 1 LSPLPVVSR 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LS(1)PLPVVSR 105.46 0.0011591 59986000 112950 102990 97917 147390 114690 86491 95019 73399 97746 161600 TRUE FALSE FALSE 138075.3378 115033.7846 134140.573 155441.5425 103271.0609 91019.53502 74717.41442 55397.78016 117362.7256 121316.094 1.138145264 0.948215367 1.105711275 1.281293663 0.851256066 0.750267603 0.615890373 0.456639992 0.967412663 1 16.88841143 -5.953336686 5.18614892 0.722753556 1.104723419 0.506471674 0.16654925 0.152169231 9.304667496 0.052823669 0.059453832 1.11E-06 5.953336686 0.381969862 LS(ph)PLPVVSR ddPTM_HeLa_A486_30min_R1 3 LSPLPVVSR 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LS(1)PLPVVSR;LS(1)PLPVVSR;LS(1)PLPVVSR ;; 162 1.26E-05 298473000 354741 421780 247296 97599 262061 370340 330092 312702 352961 416800 TRUE FALSE FALSE 329875.4878 388356.6167 343055.634 227215.4044 229190.8658 324651.2161 247499.4902 241506.5808 383555.9437 312430.5671 1.055836152 1.243017354 1.098021993 0.727250878 0.73357376 1.039114768 0.792174378 0.772992806 1.227651786 1 18.25317608 -5.091795699 6.613678874 0.884651525 1.154599838 0.321882025 0.155287475 0.251596016 15.20679263 0.04169214 0.073267306 8.09E-06 5.091795699 0.269948313 LS(ph)PPLHMAPGAGEHHLAR ddPTM_HeLa_A485_30min_R1 1 LSPPLHMAPGAGEHHLAR 18 0 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 0 LS(1)PPLHMAPGAGEHHLAR 181.75 6.54E-18 145520000 97384 86283 85696 107960 105300 82983 106870 84206 84353 145350 TRUE FALSE FALSE 119046.7348 96373.04629 117398.5165 113857.5814 94815.96227 87327.86156 84036.35145 63554.34647 101281.8734 109116.92 1.091001605 0.883209005 1.075896539 1.043445705 0.868939137 0.800314576 0.770149593 0.582442636 0.92819586 1 16.7355153 -5.938313447 3.175199748 0.7889922 1.017114704 0.405281631 0.116315434 0.228072165 4.682727239 0.037548627 0.042353303 1.15E-06 5.938313447 0.228122504 LS(ph)PPLHMAPGAGEHHLAR ddPTM_HeLa_A486_30min_R1 2 LSPPLHMAPGAGEHHLAR 18 0 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 0 LS(1)PPLHMAPGAGEHHLAR;LS(1)PPLHMAPGAGEHHLAR ; 179.03 7.71E-18 256860000 252870 285240 170202 84706 224738 260610 274650 240703 218863 277490 TRUE FALSE FALSE 235145.1188 262636.5436 236108.7726 197199.8488 196549.2644 228458.5879 205929.665 185900.1814 237834.2211 208004.6978 1.130479846 1.262647172 1.135112692 0.948054784 0.944927045 1.098333789 0.990024106 0.893730687 1.14340793 1 17.66625659 -5.089338081 4.603116564 1.000011381 1.197687015 0.536501888 0.075115346 0.154285057 5.599305873 0.020025134 0.036644693 8.14E-06 5.089338081 0.197675634 LS(ph)PQQAFPR ddPTM_HeLa_A485_30min_R1 3 LSPQQAFPR 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 LS(1)PQQAFPR;LS(1)PQQAFPR;LS(1)PQQAFPR ;; 123.2 0.00031965 1051163000 1045360 1255220 1136768 1272403 1436080 1222775 1456756 1449643 1085683 1485847 TRUE FALSE FALSE 1277896.726 1402007.06 1557305.788 1341911.154 1293098.833 1286797.608 1145508.18 1094115.781 1303569.62 1115452.688 1.145630594 1.256895138 1.396119983 1.203019338 1.159259238 1.153610209 1.026944659 0.980871527 1.168646267 1 20.08919789 -6.204891377 1.343962036 1.044552118 1.262728066 0.573690798 0.077672433 0.312063735 1.143828579 0.036857914 0.034876934 6.24E-07 6.204891377 0.218175947 LS(ph)PQQAFPR ddPTM_HeLa_A486_30min_R1 2 LSPQQAFPR 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 LS(1)PQQAFPR;LS(1)PQQAFPR ; 142.47 0.00011662 855190000 535180 619260 402860 242040 611230 526690 620900 593090 463670 598390 TRUE FALSE FALSE 497666.6457 570187.5823 558858.181 563481.352 534563.8339 461712.3428 465544.2528 458056.3541 503861.2889 448549.2491 1.109502795 1.271181667 1.245923791 1.256230733 1.191761741 1.029345927 1.037888824 1.021195231 1.123313192 1 18.77490687 -6.187348587 4.217459253 1.043067048 1.225559124 0.74026133 0.051198384 0.11306943 3.854145572 0.017128455 0.016940856 6.50E-07 6.187348587 0.182492077 LS(ph)PS(ph)PSSR ddPTM_HeLa_A486_30min_R1 1 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 0 LS(1)PS(0.997)PS(0.003)SR 78.488 0.021506 290300000 479220 1064400 714730 385270 989590 1084500 1098900 1050800 904070 833550 TRUE FALSE FALSE 445629.1527 980053.0675 991492.5971 896928.0305 865466.3946 950705.4164 823943.597 811555.7788 982435.5155 624823.6545 0.713207878 1.568527472 1.586835886 1.435489876 1.385137052 1.521557978 1.318681825 1.298855722 1.572340465 1 19.25308955 LS(ph)PS(ph)PTSQR ddPTM_HeLa_A486_30min_R1 1 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LS(0.998)PS(0.903)PT(0.079)S(0.02)QR 67.214 0.035551 326590000 315130 554380 494360 137330 595440 483450 474970 503070 460230 319730 TRUE FALSE FALSE 293041.0143 510448.9098 685789.4314 319711.1803 520754.3629 423806.8544 356127.4823 388531.9429 500123.107 239667.5269 1.222698036 2.129820908 2.861419902 1.333977883 2.172819863 1.768311543 1.485922965 1.621128853 2.086737045 1 17.87067492 -6.510996864 6.987611833 1.60296771 1.972031696 0.119950122 0.493613802 0.355261323 93.70426934 0.180705556 0.149797508 3.08E-07 6.510996864 0.369063985 LS(ph)PSPTSQR ddPTM_HeLa_A486_30min_R1 1 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LS(0.568)PS(0.409)PT(0.009)S(0.014)QR 58.592 0.03462 174470000 54528 72634 70895 31656 77841 62777 74690 70394 69003 72276 TRUE FALSE FALSE 50705.86878 66878.21731 98347.44263 73696.76781 68077.45594 55032.21201 56001.77201 54366.82289 74984.2356 54177.61916 0.935919104 1.23442518 1.815278046 1.360280665 1.256560495 1.015773909 1.03366986 1.003492286 1.384044496 1 15.72540938 -6.046439013 3.778173073 1.085386346 1.360372741 0.211464882 0.226798323 0.367087275 10.80479934 0.0805043 0.084151661 8.99E-07 6.046439013 0.274986394 LS(ph)PSTSGPHSHDYLPQER ddPTM_HeLa_A485_30min_R1 3 LSPSTSGPHSHDYLPQER 18 0 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 0 LS(0.995)PS(0.005)TSGPHSHDYLPQER;LS(0.985)PS(0.014)T(0.001)SGPHSHDYLPQER;LS(0.945)PS(0.054)T(0.001)SGPHSHDYLPQER ;; 166.93 2.57E-12 910150000 432970 538540 579503 398839 657750 439504 564227 487483 516071 602980 TRUE FALSE FALSE 529282.6828 601517.5683 793885.2748 420626.5647 592262.1005 462515.7498 443675.2921 367927.0299 619641.716 452668.183 1.169250905 1.328826701 1.753790756 0.929216102 1.308380228 1.021754493 0.980133592 0.812796312 1.368865185 1 18.78809438 -5.286533831 24.99417634 1.057770926 1.408443292 0.383781144 0.207268565 771.5240942 768439.5058 0.058004403 0.086070854 5.17E-06 5.286533831 0.350672366 LS(ph)PSTSGPHSHDYLPQER ddPTM_HeLa_A486_30min_R1 2 LSPSTSGPHSHDYLPQER 18 0 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 0 LS(0.996)PS(0.004)TSGPHSHDYLPQER;LS(0.98)PS(0.02)TSGPHSHDYLPQER ; 131.56 5.11E-06 896330000 355560 417240 324650 45174 402620 334250 374570 342210 360410 244770 TRUE FALSE FALSE 330637.0801 384176.3828 450363.1744 105167.355 352119.6453 293013.6334 280848.6242 264296.2534 391650.629 183477.9988 1.80205301 2.093855314 2.454589528 0.573187824 1.919138249 1.596996017 1.53069374 1.440479268 2.134591785 1 17.48524755 -1 0.044666375 4.45E-12 4.5448768 0.150514672 0.489227773 1266.545925 4.300757396 111.7873658 415.191053 0.1 1 4.5448768 LS(ph)PSWNPK ddPTM_HeLa_A485_30min_R1 2 LSPSWNPK 8 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 LS(0.923)PS(0.077)WNPK;LS(0.834)PS(0.166)WNPK ; 91.656 0.0036751 151318000 387962 343329 266125 471660 393723 320758 416026 378780 326655 589410 TRUE FALSE FALSE 474262.8084 383478.34 364575.7119 497425.5915 354522.5557 337552.3929 327138.6465 285883.6111 392211.6622 442480.9343 1.071826539 0.866655058 0.823935414 1.124174067 0.801215438 0.762863135 0.739328231 0.646092496 0.88639223 1 18.75525577 -5.964880986 24.91974376 0.780751474 0.954734743 0.294811919 0.121113778 202.8241805 143919.0848 0.036531473 0.041422644 1.08E-06 5.964880986 0.173983269 LS(ph)PSWNPK ddPTM_HeLa_A486_30min_R1 2 LSPSWNPK 8 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 LS(0.639)PS(0.361)WNPK;LS(0.962)PS(0.038)WNPK ; 147.73 0.00028484 215590000 702110 700880 383340 239260 596380 697250 710230 691740 567960 813990 TRUE FALSE FALSE 652895.7147 645339.7162 531779.5142 557009.3715 521576.4594 611230.3841 532522.942 534245.9026 617191.2301 610161.6058 1.070037361 1.057653759 0.871538801 0.912888268 0.854816911 1.001751632 0.872757212 0.87558099 1.011520922 1 19.21883188 -4.747836547 24.54339447 0.918584263 1.063845727 0.483617267 0.057026863 141.3698988 255066.1045 0.013856948 0.036207531 1.79E-05 4.747836547 0.145261463 LS(ph)PTFPESIEHPLAR ddPTM_HeLa_A485_30min_R1 1 LSPTFPESIEHPLAR 15 0 M9T4I7;Q5U5Q3 M9T4I7 MEX3C RNA-binding E3 ubiquitin-protein ligase MEX3C 1 0 LS(0.991)PT(0.009)FPESIEHPLAR 97.081 0.00056615 270960000 79119 80121 78922 71983 109520 66501 81954 78170 82308 109820 TRUE FALSE FALSE 96718.74859 89490.45399 108118.532 75915.24902 98615.80425 69982.88953 64443.8584 58998.68493 98826.46063 82443.89509 1.173146277 1.085470961 1.311419504 0.920811043 1.19615654 0.848854721 0.781669259 0.715622241 1.198711688 1 16.33112505 -6.265608099 24.91055426 0.883241568 1.132150807 0.348418433 0.154112849 363.9595222 2174865.495 0.052097755 0.047609911 5.42E-07 6.265608099 0.248909239 LS(ph)PTFPESIEHPLAR ddPTM_HeLa_A486_30min_R1 1 LSPTFPESIEHPLAR 15 0 M9T4I7;Q5U5Q3 M9T4I7 MEX3C RNA-binding E3 ubiquitin-protein ligase MEX3C 1 0 LS(0.996)PT(0.004)FPESIEHPLAR 139.88 1.96E-06 378630000 183460 217050 150120 34768 160710 179560 176230 176600 178400 174820 TRUE FALSE FALSE 170600.4014 199850.1675 208250.4844 80941.66108 140552.2532 157407.7128 132135.39 136392.0352 193863.8556 131043.9341 1.30185653 1.52506233 1.589165388 0.617668125 1.072558255 1.201182748 1.008328931 1.040811512 1.479380613 1 16.99969105 -5.221478773 24.99996708 1.065944408 1.47733161 0.445084952 0.210734653 492.216106 307937.2889 0.057178272 0.099033995 6.01E-06 5.221478773 0.411387202 LS(ph)PTSLVHPVMSTLPELSCK ddPTM_HeLa_A485_30min_R1 2 LSPTSLVHPVMSTLPELSCK 20 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 LS(0.702)PT(0.149)S(0.149)LVHPVMSTLPELSCK;LS(0.377)PT(0.311)S(0.311)LVHPVMSTLPELSCK ; 220.13 1.82E-35 547420000 560220 393720 373560 544030 534460 364558 556260 398820 462060 784190 TRUE FALSE FALSE 684839.0063 439762.1291 511755.3891 573748.9813 481247.2858 383645.6932 437410.5068 301008.7697 554791.2037 588705.8649 1.163295709 0.746998043 0.869288756 0.974593622 0.817466437 0.651676357 0.743003481 0.511305879 0.942391161 1 19.16718747 -5.977513526 5.630991251 0.73678599 0.918490679 0.177018789 0.162689156 0.265615288 25.90085029 0.049371581 0.054811181 1.05E-06 5.977513526 0.181704689 LS(ph)PVIS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LSPVISPR 8 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 2 0 LS(1)PVIS(1)PR;LS(1)PVIS(1)PR ; 105.2 0.0030083 765200000 961120 1023320 826290 1078740 809140 808370 955330 804090 780160 1178550 TRUE FALSE FALSE 1174917.828 1142988.372 1131969.056 1137668.835 728579.1805 850695.0032 751215.9412 606885.6667 936730.9559 884759.1746 1.327952127 1.291863826 1.279409232 1.285851413 0.823477395 0.961498934 0.849062618 0.685933172 1.058741161 1 19.75492529 -5.755748359 24.99371149 0.881631713 1.294750303 0.799426128 0.097940507 56.11702721 246452.113 0.028394292 0.035640753 1.75E-06 5.755748359 0.41311859 LS(ph)PVIS(ph)PR ddPTM_HeLa_A486_30min_R1 5 LSPVISPR 8 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 2 0 LS(1)PVIS(1)PR;LS(1)PVIS(1)PR;LS(1)PVIS(1)PR;LS(1)PVIS(1)PR;LS(1)PVIS(1)PR ;;;; 134.3 0.0010402 1258170000 2279140 2431930 1202620 602394 1376130 1871240 1856180 1708340 1736320 2717700 TRUE FALSE FALSE 2119384.055 2239215.01 1668306.671 1402403.675 1203522.943 1640385.434 1391744.131 1319388.275 1886825.616 2037170.231 1.040356875 1.099179134 0.818933365 0.688407701 0.590781725 0.805227472 0.683175176 0.647657351 0.926199287 1 20.95813511 -4.856638454 4.108537353 0.740539226 1.070962804 0.492884382 0.120783281 0.150408863 4.624503954 0.030762279 0.071079047 1.39E-05 4.856638454 0.330423579 LS(ph)PVPVPR ddPTM_HeLa_A485_30min_R1 1 LSPVPVPR 8 0 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 1 0 LS(1)PVPVPR 85.731 0.0047993 234120000 441870 488700 727200 472810 928160 393240 473080 434240 682530 620480 TRUE FALSE FALSE 540162.4571 545849.2139 996221.5413 498638.4131 835749.1314 413829.4383 372002.5933 327741.9591 819507.5105 465805.7551 1.159630278 1.171838707 2.138705953 1.070485729 1.794200957 0.888416328 0.79862172 0.703602211 1.759333159 1 18.82936894 -6.27926961 24.76326116 0.997008989 1.465867532 0.226085103 0.401927852 1072.533688 1489568.281 0.139119015 0.122954895 5.26E-07 6.27926961 0.468858543 LS(ph)PVPVPR ddPTM_HeLa_A486_30min_R1 2 LSPVPVPR 8 0 Q9UKM9;Q9UKM9-2;Q5QPM1;Q5QPM0;Q5QPL9 Q9UKM9 RALY RNA-binding protein Raly 1 0 LS(1)PVPVPR;LS(1)PVPVPR ; 94.692 0.0031528 315350000 857610 1807900 2155110 291250 2520900 1172170 1065770 1379990 1458820 680500 TRUE FALSE FALSE 797495.9677 1664635.42 2989626.308 678044.719 2204705.216 1027559.583 799103.0734 1065796.402 1585271.692 510098.3707 1.563416026 3.26336157 5.8608819 1.32924306 4.322117737 2.014434161 1.566566606 2.089393857 3.107776428 1 18.96041597 -6.324444134 14.86760826 1.99921809 3.303885181 0.202129253 1.301076582 6.175569307 1455.534109 0.452345375 0.398922008 4.74E-07 6.324444134 1.304667091 LS(ph)S(ph)TGLICIDSLK ddPTM_HeLa_A485_30min_R1 1 LSSTGLICIDSLK 13 0 D6RJI3;P35556-2;P35556 D6RJI3 FBN2 Fibrillin-2 2 0 LS(0.91)S(0.578)T(0.513)GLICIDSLK 61.097 0.026245 169860000 152280 85746 92938 260540 139120 110590 129850 90143 129590 307370 TRUE FALSE FALSE 186154.1606 95773.24881 127319.6337 274772.6405 125268.7243 116380.3214 102106.4867 68035.28791 155597.5243 230748.3157 0.806741146 0.415055029 0.55176842 1.190789366 0.542880341 0.504360437 0.442501547 0.294846303 0.674317053 1 17.81596059 -8.024539737 23.80576368 1.000000016 0.58947958 0.209270937 0.236315503 2071.301415 2009349.15 0.239651469 0.061877743 9.45E-09 8.024539737 -0.410520436 LS(ph)SDSFAR ddPTM_HeLa_A485_30min_R1 2 LSSDSFAR 8 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LS(0.931)S(0.068)DSFAR;LS(0.991)S(0.009)DSFAR ; 216.12 1.49E-08 976850000 1247100 1204700 828640 1558220 1009820 1147260 1424980 1277990 1090300 2618800 TRUE FALSE FALSE 1524513.093 1345579.186 1135188.419 1643341.613 909278.7751 1207328.76 1120521.382 964560.9487 1309113.209 1965981.355 0.775446363 0.684431305 0.577415658 0.835888707 0.462506306 0.614109974 0.569955243 0.490625685 0.66588282 1 20.90681821 -8.038029437 23.41107877 1.000000002 0.622873547 0.507055583 0.109815298 2569.875574 1582024.035 0.106401724 0.027472807 9.16E-09 8.038029437 -0.377126455 LS(ph)SDSFAR ddPTM_HeLa_A486_30min_R1 4 LSSDSFAR 8 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LS(0.906)S(0.093)DS(0.001)FAR;LS(0.924)S(0.076)DSFAR;LS(0.989)S(0.011)DSFAR;LS(1)SDSFAR ;;; 216.12 1.49E-08 1264500000 1205830 1514060 1194050 439283 1605260 1610690 1526320 1333250 1642540 1832550 TRUE FALSE FALSE 1121307.544 1394080.371 1656418.138 1022673.024 1403913.322 1411979.444 1144418.592 1029698.08 1784916.69 1373667.552 0.816287421 1.014860087 1.205836256 0.744483643 1.022018261 1.027890221 0.83311176 0.749597731 1.299380397 1 20.38960146 -7.767536563 24.99990803 1.149690099 0.936348546 0.250206254 0.153649553 230.8759909 946600.7151 0.134381265 0.038220371 1.71E-08 7.767536563 -0.213341554 LS(ph)SEDEEEDEAEDDQSEASGKK ddPTM_HeLa_A486_30min_R1 1 LSSEDEEEDEAEDDQSEASGKK 22 1 Q8NEJ9-2;Q8NEJ9;G3V4G1 Q8NEJ9-2 NGDN Neuroguidin 1 0 LS(0.5)S(0.5)EDEEEDEAEDDQSEASGKK 119.76 1.96E-08 0 39194 35758 14627 20260 36677 46677 56937 48196 25679 62406 TRUE FALSE FALSE 36446.703 32924.40585 20290.96612 47166.30388 32076.62866 40918.46632 42690.76038 37222.82291 27904.8764 46779.13141 0.779123124 0.703826789 0.433761071 1.008276607 0.685703811 0.874716248 0.912602673 0.795714281 0.596524039 1 15.51357745 -5.267584276 24.99251494 0.828722908 0.645395975 0.281748754 0.145696056 684.8340396 2785355.961 0.040199719 0.06134546 5.40E-06 5.267584276 -0.183326932 LS(ph)SGFDDIDLPSAVK ddPTM_HeLa_A485_30min_R1 3 LSSGFDDIDLPSAVK 15 0 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 LS(0.998)S(0.002)GFDDIDLPSAVK;LS(0.985)S(0.015)GFDDIDLPSAVK;LS(0.5)S(0.5)GFDDIDLPSAVK ;; 260.49 2.11E-50 262986000 460560 337973 286517 704590 508440 466010 751030 682370 495730 1041210 TRUE FALSE FALSE 563009.9831 377496.0024 392511.5613 743079.9676 457817.9284 490409.563 590566.3051 515017.6876 595218.4639 781655.509 0.720278916 0.48294421 0.502154155 0.950648923 0.585702938 0.627398588 0.75553271 0.658880647 0.761484384 1 19.5761734 -14 0.151021257 2.220957317 0.563513934 0.411988945 0.125106521 135.7666381 1.212339149 49.43579736 0.63215221 1.00E-14 14 -1.657443383 LS(ph)SGFDDIDLPSAVK ddPTM_HeLa_A486_30min_R1 2 LSSGFDDIDLPSAVK 15 0 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 LS(0.5)S(0.5)GFDDIDLPSAVK;LS(0.978)S(0.022)GFDDIDLPSAVK ; 150.05 5.49E-08 116660000 82283 96474 47920 45071 74465 106371 130260 121584 82488 134214 TRUE FALSE FALSE 76515.38661 88829.04889 66475.90734 104927.5658 65124.90534 93248.02752 97667.57025 93901.97736 89638.12626 100605.9408 0.760545411 0.882940393 0.660755287 1.042955962 0.647326637 0.926864028 0.97079327 0.933364139 0.890982436 1 16.61835597 -6.4891375 24.98931472 0.944031541 0.80722065 0.310733486 0.108294991 793.9814391 588036.5075 0.035538674 0.03132281 3.24E-07 6.4891375 -0.136810891 LS(ph)SGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ddPTM_HeLa_A485_30min_R1 1 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 LS(0.787)S(0.213)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 199.53 2.39E-29 446650000 39848 60662 61485 45144 106640 67898 87966 72374 62504 96009 TRUE FALSE FALSE 48712.05013 67755.89321 84230.8601 47610.10241 96022.54716 71453.03429 69171.34548 54624.16302 75047.97948 72075.72321 0.675845457 0.940065395 1.168643981 0.660556707 1.332245351 0.991360629 0.9597038 0.757871868 1.041237967 1 16.13722579 -4.281928746 4.469548205 0.983902544 0.659894899 0.215423094 0.177687811 0.277140376 13.50843984 0.043149024 0.270756018 5.22E-05 4.281928746 -0.324007645 LS(ph)SGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ddPTM_HeLa_A486_30min_R1 2 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 LS(0.594)S(0.104)GPEQIT(0.131)LEAS(0.129)S(0.02)T(0.02)EGHPGAPS(0.001)PQHTDQTEAFQK;LS(0.914)S(0.084)GPEQIT(0.002)LEASSTEGHPGAPSPQHTDQTEAFQK ; 153.58 6.70E-10 800600000 278184 435414 398002 38958 541840 258609 219568 286508 383572 113270 TRUE FALSE FALSE 258684.7381 400910.2089 552119.0333 90696.19283 473877.3747 226704.4509 164629.764 221276.3828 416820.3298 84906.45474 3.046702856 4.721787173 6.502674443 1.068189611 5.581170197 2.670049664 1.938954636 2.606119682 4.909171288 1 16.37358661 -6.03678004 1.049419798 2.695513771 4.392210429 0.142416178 1.682994472 1.055507599 2.481607705 0.832750315 0.942545352 9.19E-07 6.03678004 1.696696659 LS(ph)SLRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 3 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.793)S(0.207)LRAS(0.941)T(0.048)S(0.011)K;LS(0.828)S(0.172)LRAS(0.926)T(0.033)S(0.041)K;LS(0.86)S(0.14)LRAS(0.98)T(0.018)S(0.002)K ;; 109.48 0.00085201 16699570000 13975200 11113000 7601400 18255400 11280200 10407000 15960800 13627400 7942100 19612300 TRUE FALSE FALSE 17083935.03 12412568.68 10413474.18 19252646.28 10157103.68 10951894.43 12550644.69 10285258.78 9536006.621 14723314.55 1.160332137 0.843055322 0.707277845 1.307629896 0.689865291 0.743847073 0.852433374 0.69856952 0.647680696 1 23.81159916 LS(ph)SLRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 2 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.792)S(0.208)LRAS(0.956)T(0.036)S(0.007)K;LS(0.77)S(0.23)LRAS(0.944)T(0.025)S(0.032)K ; 109.07 0.00087326 2898500000 8100190 9244300 4481540 4039830 7014050 9885700 11190400 9896400 6651840 11950200 TRUE FALSE FALSE 7532408.51 8511748.001 6216912.308 9404928.402 6134282.446 8666102.844 8390443.56 7643205.757 7228426.847 8957792.137 0.840877796 0.950206018 0.694022836 1.049915901 0.684798481 0.967437368 0.93666424 0.853246608 0.806942909 1 23.09471176 LS(ph)SPISKR ddPTM_HeLa_A485_30min_R1 1 LSSPISKR 8 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 LS(0.5)S(0.5)PISKR 100.48 0.0012662 429160000 427170 586910 381960 419050 631920 625890 763140 1027400 390540 529590 TRUE FALSE FALSE 522192.4928 655544.0191 523262.8987 441941.6404 569003.826 658660.6326 600088.9047 775428.5391 468917.7958 397572.9594 1.313450728 1.648864702 1.316143078 1.11159884 1.431193477 1.6567038 1.509380582 1.950405632 1.179450928 1 18.60086011 -6.003442695 24.93540802 1.524194807 1.354873274 0.009067835 0.272376865 386.7627341 2801349.73 0.082904226 0.092117653 9.92E-07 6.003442695 -0.169321534 LS(ph)SPISKR ddPTM_HeLa_A486_30min_R1 2 LSSPISKR 8 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 LS(0.5)S(0.5)PISKR;LS(0.5)S(0.5)PISKR ; 114.5 0.00060098 484460000 1013750 868260 527450 394490 1041660 767830 1069580 1050740 606390 1106070 TRUE FALSE FALSE 942691.36 799455.9155 731692.7656 918392.6564 911005.2897 673102.9413 801959.7711 811509.4395 658952.3734 829102.8727 1.137001681 0.964242125 0.882511435 1.107694457 1.098784385 0.811844903 0.967262082 0.978780157 0.794777578 1 19.66119159 -6.251862422 24.99580059 0.912752273 1.029175012 0.315196772 0.093491897 956.9852284 2497726.139 0.031632608 0.031249559 5.60E-07 6.251862422 0.116422739 LS(ph)SPKPK ddPTM_HeLa_A485_30min_R1 1 LSSPKPK 7 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 LS(0.5)S(0.5)PKPK 40.724 0.037695 182760000 201160 156550 103190 424750 174860 252850 293510 365950 154160 458890 TRUE FALSE FALSE 245907.348 174857.1607 141364.2751 447953.017 157450.3244 266088.835 230799.1907 276200.1887 185098.498 344497.1682 0.713815296 0.507572128 0.4103496 1.300309722 0.457043886 0.772397742 0.669959617 0.801748793 0.537300492 1 18.3941326 -11.4459298 2.05623769 3.567672571 0.689143335 0.132489081 0.241191393 7172949.166 558194.6697 85774375.17 0.061074565 3.58E-12 11.4459298 -2.878529236 LS(ph)SPKPK ddPTM_HeLa_A486_30min_R1 1 LSSPKPK 7 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 LS(0.5)S(0.5)PKPK 41.876 0.036348 377350000 256730 158650 113990 200910 153900 405990 293240 240710 241430 519550 TRUE FALSE FALSE 238734.5528 146077.9962 158129.9808 467728.6334 134596.4269 355903.0816 219868.2504 185905.5877 262357.3468 389451.2983 0.613002329 0.375086684 0.406032748 1.2009939 0.345605285 0.913857736 0.564559038 0.477352594 0.673658935 1 18.5710834 -11.86288989 1.451674314 7.844157548 0.617466836 0.171509142 0.251260889 1763482.113 43814.30902 39748341.2 0.068459847 1.37E-12 11.86288989 -7.226690712 LS(ph)SPSR ddPTM_HeLa_A486_30min_R1 1 LSSPSR 6 0 H3BPM0;H3BS25;Q9BY12-3;Q9BY12-2;Q9BY12 H3BPM0 SCAPER S phase cyclin A-associated protein in the endoplasmic reticulum 1 0 LS(0.996)S(0.004)PSR 86.833 0.016999 652080000 547600 696550 522700 203490 594930 654060 620060 619490 545240 692830 TRUE FALSE FALSE 509216.0678 641352.8412 725103.4384 473735.0038 520308.3319 573368.7272 464914.4297 478445.6504 592501.8422 519340.8584 0.980504537 1.234936229 1.396199484 0.912185121 1.001862887 1.104031616 0.89520095 0.921255554 1.140872767 1 18.98632221 -5.280760091 24.99363666 0.993690735 1.206985728 0.386219819 0.11975448 794.3277782 1027555.43 0.034045401 0.050580483 5.24E-06 5.280760091 0.213294993 LS(ph)SPVLHR ddPTM_HeLa_A485_30min_R1 4 LSSPVLHR 8 0 Q16643;Q16643-2;D6RCR4;D6R9W4;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 LS(0.632)S(0.368)PVLHR;LS(0.626)S(0.374)PVLHR;LS(0.5)S(0.5)PVLHR;LS(0.637)S(0.363)PVLHR ;;; 162.88 3.77E-05 48952900000 3953040 5088910 4604230 4199520 5792900 4592530 6253760 6361700 4349790 5754150 TRUE FALSE FALSE 4832380.11 5684013.757 6307526.275 4428929.144 5216138.536 4832987.769 4917593.087 4801483.1 5222752.954 4319746.302 1.118672202 1.315821199 1.460161277 1.02527529 1.207510389 1.118812873 1.138398587 1.111519697 1.209041594 1 22.04251516 -5.273912283 24.9957043 1.125329871 1.299978534 0.412372415 0.099330401 731.8560036 1466638.865 0.02738905 0.040957217 5.32E-06 5.273912283 0.174648663 LS(ph)SPVLHR ddPTM_HeLa_A486_30min_R1 8 LSSPVLHR 8 0 Q16643;Q16643-2;D6RCR4;D6R9W4;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 LS(0.5)S(0.5)PVLHR;LS(0.5)S(0.5)PVLHR;LS(0.5)S(0.5)PVLHR;LS(0.768)S(0.232)PVLHR;LS(0.641)S(0.359)PVLHR;LS(0.634)S(0.366)PVLHR;LS(0.622)S(0.378)PVLHR;LS(0.5)S(0.5)PVLHR ;;;;;;; 162.88 3.77E-05 83457580000 13934610 15692100 11910080 4393033 16565980 13707380 15906710 15637980 12373630 15462200 TRUE FALSE FALSE 12957865.8 14448600.85 16521981.94 10227202.84 14488120.32 12016302.82 11926682.91 12077553.33 13446186.21 11590364.48 1.11798605 1.246604529 1.425492871 0.882388371 1.250014212 1.036749349 1.029017072 1.042033954 1.160117634 1 23.4664226 -5.258117418 24.99941628 1.064949017 1.261685476 0.403778156 0.114531325 298.2782577 2244685.111 0.03057488 0.050362819 5.52E-06 5.258117418 0.196736459 LS(ph)SSLDNKEK ddPTM_HeLa_A485_30min_R1 1 LSSSLDNKEK 10 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LS(0.386)S(0.33)S(0.283)LDNKEK 52.555 0.0093349 0 352160 254620 167540 415300 386440 293590 501890 463330 232800 522310 TRUE FALSE FALSE 430496.7771 284395.5941 229520.0179 437986.7874 347964.6767 308961.9184 394657.1014 349697.591 279520.8246 392107.7294 1.097904338 0.725299638 0.585349384 1.117006258 0.887421111 0.787951614 1.006501713 0.891840596 0.712867418 1 18.58089056 -5.261571153 25 0.907686708 0.795095989 0.0916261 0.159878628 30.45119777 5777719.719 0.044389082 0.070872983 5.48E-06 5.261571153 -0.112590718 LS(ph)STDDGYIDLQFK ddPTM_HeLa_A485_30min_R1 1 LSSTDDGYIDLQFK 14 0 Q5JWB9;A0A087WTT2;Q96A57;Q96A57-2 Q5JWB9 TMEM230 Transmembrane protein 230 1 0 LS(0.47)S(0.47)T(0.059)DDGYIDLQFK 113.24 0.00021807 96938000 196800 144990 106000 237270 150850 148460 233090 235380 147600 389530 TRUE FALSE FALSE 240577.481 161945.3193 145213.811 250231.4593 135830.8443 156233.136 183288.4173 177652.6859 177221.9661 292427.3398 0.82269148 0.55379678 0.49658083 0.855704735 0.464494341 0.534263096 0.626782768 0.607510522 0.60603761 1 18.15771867 -10.32332798 5.905330239 1.000039058 0.613021164 0.468006848 0.121841867 6.06E-05 6.94E-06 0.114046222 0.027657488 4.75E-11 10.32332798 -0.387017895 LS(ph)STDDGYIDLQFK ddPTM_HeLa_A486_30min_R1 1 LSSTDDGYIDLQFK 14 0 Q5JWB9;A0A087WTT2;Q96A57;Q96A57-2 Q5JWB9 TMEM230 Transmembrane protein 230 1 0 LS(0.497)S(0.497)T(0.006)DDGYIDLQFK 139.89 2.86E-06 37868000 224410 225210 138780 102720 236880 290680 297320 302940 223000 355210 TRUE FALSE FALSE 208680.0179 207363.5394 192519.3327 239137.3512 207168.3016 254818.857 222927.3913 233967.1751 242329.8196 266263.104 0.783736142 0.778791865 0.72304172 0.898124252 0.778058614 0.957019028 0.83724477 0.878706706 0.910114154 1 18.022493 -1.000000001 0.073082421 1.165579678 0.083264444 0.612297878 0.052622436 149.4902844 0.80545432 1.991480282 16.53221416 0.1 1.000000001 -1.082315234 LS(ph)TGSFPEDLLESDSSR ddPTM_HeLa_A486_30min_R1 1 LSTGSFPEDLLESDSSR 17 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 LS(0.333)T(0.333)GS(0.333)FPEDLLESDSSR 62.378 0.0082719 0 7321 8155.6 7514 3702 9173.3 6182 8295.8 8266 4636.6 7112.4 TRUE FALSE FALSE 6807.835706 7509.320554 10423.62203 8618.443089 8022.699176 5419.327694 6220.103096 6384.012246 5038.504221 5331.408746 1.276929988 1.408505877 1.955134661 1.616541424 1.504799118 1.016490754 1.166690343 1.197434402 0.945060576 1 12.38030108 -6.193374052 4.763348881 1.083606108 1.577381553 0.651935911 0.177729919 0.151244934 6.717506789 0.064137334 0.063555106 6.41E-07 6.193374052 0.493775445 LS(ph)TPQKK ddPTM_HeLa_A485_30min_R1 1 LSTPQKK 7 1 Q96C90;F5GXC4;F5H2U0;B5MC51;P53671-3 Q96C90 PPP1R14B;LIMK2 Protein phosphatase 1 regulatory subunit 14B 1 0 LS(0.55)T(0.45)PQKK 62.262 0.019346 291800000 354560 122150 67818 820760 172000 430820 519600 523510 204140 992260 TRUE FALSE FALSE 433430.6488 136434.3799 92906.70034 865596.0405 154875.0761 453377.069 408583.2153 395118.3517 245109.0255 744907.8432 0.581858082 0.183156052 0.124722409 1.162017622 0.207911727 0.608635113 0.548501696 0.530425817 0.329046107 1 19.50670243 -10.94497977 2.648459827 1.374389774 0.476299832 0.234286032 0.284651118 36962063.78 21062877.17 85384447 0.071682279 1.14E-11 10.94497977 -0.898089942 LS(ph)TTPS(ph)PTS(ph)SLHEDGVEDFRR ddPTM_HeLa_A486_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 3 0 LS(0.44)T(0.44)T(0.12)PS(0.572)PT(0.43)S(0.57)S(0.428)LHEDGVEDFRR 93.446 0.00059636 877020000 300020 364770 325380 90093 420480 311190 354010 394550 297400 291700 TRUE FALSE FALSE 278990.1473 335864.2967 451375.85 209741.057 367739.4776 272798.5417 265432.9537 304719.578 323178.8715 218656.4214 1.275929358 1.53603674 2.064315547 0.959226607 1.681814215 1.247612762 1.213927092 1.39359995 1.478021407 1 17.73830619 -5.272778147 24.9656263 1.310815029 1.616488199 0.248901247 0.270010402 1076.626315 2370507.331 0.074235389 0.111217056 5.34E-06 5.272778147 0.30567317 LS(ph)VY(ph)RLQLAQES(ph)AR ddPTM_HeLa_A485_30min_R1 1 LSVYRLQLAQESAR 14 1 F8W030;Q2TBF2;Q2TBF2-2 F8W030 WSCD2 WSC domain-containing protein 2 3 0 LS(1)VY(1)RLQLAQES(1)AR 44.045 0.0098858 0 31147 62766 72077 28069 58879 68410 62438 59909 57820 45624 TRUE FALSE FALSE 38075.54269 70105.93771 98741.28167 29602.3384 53016.80002 71991.84182 49097.61123 45216.22382 69423.94364 34250.77645 1.111669476 2.04684229 2.882891774 0.864282258 1.547900676 2.101903936 1.4334744 1.320151789 2.026930506 1 15.06384907 -11.47822786 0.228223916 6.90E-15 1.825601469 0.116313722 0.557477429 94.1171015 2.625505343 49.255386 1.08669195 3.32E-12 11.47822786 1.825601469 LS(ph)VY(ph)RLQLAQES(ph)AR ddPTM_HeLa_A486_30min_R1 1 LSVYRLQLAQESAR 14 1 F8W030;Q2TBF2;Q2TBF2-2 F8W030 WSCD2 WSC domain-containing protein 2 3 0 LS(1)VY(1)RLQLAQES(1)AR 42.257 0.010816 0 121080 115720 102920 21522 136720 92532 89541 113030 135070 65218 TRUE FALSE FALSE 112592.9173 106549.9258 142773.3803 50104.30366 119571.3027 81116.34264 67136.89473 87295.53643 146777.9764 48886.9883 2.303126479 2.17951503 2.920478132 1.0249006 2.445871732 1.659262422 1.373308053 1.785659937 3.002393509 1 15.57716291 -5.244330257 24.833292 1.797428723 2.438887306 0.224651668 0.601818317 1262.674719 1832725.133 0.158741929 0.274034638 5.70E-06 5.244330257 0.641458583 LS(ph)WGYR ddPTM_HeLa_A486_30min_R1 1 LSWGYR 6 0 Q8N1Q1;Q9BTY2 Q8N1Q1 CA13;FUCA2 Carbonic anhydrase 13;Plasma alpha-L-fucosidase 1 0 LS(1)WGYR 110.12 0.0090239 170900000 231640 285280 186630 101240 232600 265180 284360 273120 218250 270530 TRUE FALSE FALSE 215403.2322 262673.3738 258898.1341 235691.8364 203425.1391 232464.7878 213210.1203 210936.5382 237168.0857 202787.5271 1.062211445 1.295313265 1.276696539 1.162260025 1.003144237 1.146346578 1.051396619 1.040184972 1.169539809 1 17.62960939 -5.550086468 6.993779672 1.073868664 1.219949473 0.412767104 0.077654748 0.161062803 28.17310099 0.022178166 0.029112303 2.82E-06 5.550086468 0.146080809 LS(ph)YSDKNLIDSMDQSAFAGFSFVNPK ddPTM_HeLa_A485_30min_R1 2 LSYSDKNLIDSMDQSAFAGFSFVNPK 26 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 LS(0.873)YS(0.126)DKNLIDS(0.001)MDQSAFAGFSFVNPK;LS(0.996)YS(0.004)DKNLIDSMDQSAFAGFSFVNPK ; 211.26 4.14E-29 201962000 78037 42382 39631.6 114891 75089 59379 103938 82766 56468 149889 TRUE FALSE FALSE 95396.06143 47338.20623 54292.97805 121167.2044 67612.87551 62487.99262 81730.7972 62467.50873 67800.60964 112524.4308 0.847780884 0.420692697 0.482499468 1.076807974 0.600872851 0.555328227 0.726338242 0.555146187 0.602541236 1 16.77987874 -11.10616291 2.367720431 1.62857303 0.64769732 0.247709316 0.181797849 21676515.62 5631764.391 73418203.95 0.046072142 7.83E-12 11.10616291 -0.98087571 LS(ph)YSDKNLIDSMDQSAFAGFSFVNPK ddPTM_HeLa_A486_30min_R1 2 LSYSDKNLIDSMDQSAFAGFSFVNPK 26 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 LS(0.995)YS(0.005)DKNLIDSMDQSAFAGFSFVNPK;LS(0.986)YS(0.014)DKNLIDSMDQSAFAGFSFVNPK ; 351.32 8.30E-143 240591000 157822 176964 82896 116057 176735 223790 284230 263530 159674 255720 TRUE FALSE FALSE 146759.4928 162940.7281 114995.5512 270186.5612 154567.2483 196181.0651 213112.6477 203529.9718 173514.6709 191686.0475 0.765624283 0.850039584 0.599916127 1.409526487 0.80635628 1.023449894 1.111779655 1.06178814 0.905202403 1 17.5483858 -5.227029332 24.99996698 1.03990362 0.749677969 0.44142112 0.157978955 589.7755298 428489.5112 0.040823309 0.070703273 5.93E-06 5.227029332 -0.290225651 LSAFPEPPEDGTLLS(ph)EAK ddPTM_HeLa_A485_30min_R1 1 LSAFPEPPEDGTLLSEAK 18 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 LSAFPEPPEDGT(0.161)LLS(0.839)EAK 66.673 0.004225 0 21246 19630 17230 26410 32202 22092 36292 33599 16888 39582 TRUE FALSE FALSE 25972.0994 21925.55774 23604.094 27852.71143 28995.85581 23248.70296 28537.91772 25358.79257 20277.26669 29714.93585 0.874041914 0.737863203 0.794351168 0.937330357 0.97580072 0.782391154 0.96038968 0.853402232 0.682393083 1 14.85890065 -5.232160387 22.60305917 0.88112939 0.795663112 0.132599055 0.095934129 445.1106152 343617.1444 0.025856147 0.044767056 5.86E-06 5.232160387 -0.085466278 LSAK(ac)PAPPKPEPKPK ddPTM_HeLa_A486_30min_R1 1 LSAKPAPPKPEPKPK 15 3 P05204 P05204 HMGN2 Non-histone chromosomal protein HMG-17 0 1 LSAK(1)PAPPKPEPKPK 105.39 0.0014898 11914000 40279 34501 15160 18403 32975 36662 54484 49917 25912 59922 FALSE TRUE FALSE 37455.6501 31767.01511 21030.358 42843.11404 28838.96802 32139.01519 40851.52693 38551.98878 28158.07302 44917.14117 0.833883215 0.707235908 0.468203395 0.953825487 0.642048164 0.715517826 0.909486353 0.85829124 0.626889252 1 15.45497849 -6.735820682 23.4836602 0.836857603 0.715156932 0.154061595 0.146249417 229.779033 210628.631 0.054845161 0.042460679 1.84E-07 6.735820682 -0.121700672 LSAK(ac)PPAK ddPTM_HeLa_A485_30min_R1 2 LSAKPPAK 8 1 P05114;A6NEL0;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 1 ; LSAK(1)PPAK;LSAK(1)PPAK 111.95 0.023796 81584000 138399 147975 135105 167676 189365 156701 198615 184166 177611 307460 FALSE TRUE FALSE 169185.3801 165279.389 185085.9617 176835.7153 170511.1557 164905.6221 156179.2827 138998.9997 213255.8986 230815.8804 0.732988475 0.716065934 0.801877069 0.766133227 0.738732341 0.714446605 0.67664011 0.602207264 0.923922124 1 17.81638296 -7.922470301 5.867812698 0.998507396 0.722674357 0.791627341 0.050577193 0.084077618 4.408665385 0.053037769 0.013779246 1.20E-08 7.922470301 -0.275833039 LSAK(ac)PPAK ddPTM_HeLa_A486_30min_R1 2 LSAKPPAK 8 1 P05114;A6NEL0;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 1 ; LSAK(1)PPAK;LSAK(1)PPAK 111.74 0.024135 76510000 182441 259243 193907 90282 299030 271480 302260 291600 239803 273090 FALSE TRUE FALSE 169652.828 238699.6405 268992.9834 210181.0586 261522.8691 237987.5578 226631.351 225209.0456 260589.3171 204706.4865 0.828761369 1.166058021 1.314042305 1.02674352 1.277550475 1.162579466 1.107103907 1.100155884 1.272990034 1 17.64319729 -4.261297113 24.99960413 1.164682706 0.82876127 0.492818741 0.100205218 9.110869068 1599456.613 0.023344743 0.131083513 5.48E-05 4.261297113 -0.335921436 LSAMLVPVT(ph)PEVKPK ddPTM_HeLa_A485_30min_R1 2 LSAMLVPVTPEVKPK 15 1 Q5JSK8;Q5JSL0;Q5JSK6;P82970;Q5JSK7 Q5JSK8 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 1 0 LSAMLVPVT(1)PEVKPK;LSAMLVPVT(1)PEVKPK ; 175.33 1.53E-12 4093300000 1583590 1177990 776470 2117210 1665480 1604100 2548000 2421690 1177710 2707540 TRUE FALSE FALSE 1935854.132 1315745.683 1063718.565 2232867.821 1499658.963 1688088.196 2003598.985 1827766.73 1414065.594 2032600.107 0.952402849 0.647321467 0.523328992 1.098527848 0.737803249 0.830506793 0.985732008 0.899225935 0.695692965 1 20.95489498 -5.254243837 24.99300558 0.8831556 0.701648161 0.237886238 0.150826559 840.824769 2920515.281 0.040652487 0.068576756 5.57E-06 5.254243837 -0.181507439 LSAMLVPVT(ph)PEVKPK ddPTM_HeLa_A486_30min_R1 2 LSAMLVPVTPEVKPK 15 1 Q5JSK8;Q5JSL0;Q5JSK6;P82970;Q5JSK7 Q5JSK8 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 1 0 LSAMLVPVT(1)PEVKPK;LSAMLVPVT(1)PEVKPK ; 197.67 2.51E-25 5245800000 2781700 2551500 999180 1201280 2156600 2843400 3664900 3252300 1801030 3636700 TRUE FALSE FALSE 2586717.195 2349309.848 1386089.255 2796640.549 1886099.119 2492610.218 2747903.257 2511822.287 1957144.731 2726046.649 0.948889556 0.861801044 0.508461312 1.025896072 0.69188072 0.914368145 1.008017694 0.921415739 0.717942494 1 21.37837882 -6.400439471 22.58175165 0.913439229 0.805652231 0.107638587 0.151051336 18.78668121 3388.834557 0.052552362 0.046346776 3.98E-07 6.400439471 -0.107786998 LSAS(ph)PAQEK ddPTM_HeLa_A485_30min_R1 3 LSASPAQEK 9 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LSAS(1)PAQEK;LSAS(1)PAQEK;LSAS(1)PAQEK ;; 175.74 2.10E-06 1198730000 1726830 1663170 1345230 2101770 2185000 1899700 2530070 2477140 1623660 2869030 TRUE FALSE FALSE 2110957.376 1857663.264 1842886.557 2216584.373 1967453.728 1999165.355 1989499.876 1869617.531 1949513.669 2153833.622 0.980093056 0.862491534 0.85563088 1.029134447 0.913465974 0.928189315 0.923701745 0.868041762 0.905136613 1 21.03847538 -4.202882168 21.34520748 0.917985665 0.980095932 0.097468187 0.053725998 27112.56087 9880886.98 0.013331091 17.25899259 6.27E-05 4.202882168 0.062110267 LSAS(ph)PAQEK ddPTM_HeLa_A486_30min_R1 3 LSASPAQEK 9 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LSAS(1)PAQEK;LSAS(1)PAQEK;LSAS(1)PAQEK ;; 171.67 5.21E-06 974690000 860670 939680 587680 411010 973160 968860 1184120 1182800 726870 1284670 TRUE FALSE FALSE 800341.4775 865216.3345 815245.4346 956852.0513 851097.1984 849331.9038 887840.6517 913502.2603 789875.6768 962980.2702 0.831108905 0.898477738 0.846585813 0.993636195 0.883815821 0.881982664 0.921971799 0.948619913 0.820240768 1 19.87714671 LSAS(ph)PPK ddPTM_HeLa_A485_30min_R1 2 LSASPPK 7 0 H0YCV3;Q8TEY7-3;Q8TEY7-2;Q8TEY7 H0YCV3 USP33 Ubiquitin carboxyl-terminal hydrolase 33 1 0 LSAS(1)PPK;LSAS(1)PPK ; 84.615 0.0088385 313120000 505740 414240 282460 679620 485120 389740 587060 472900 337040 886530 TRUE FALSE FALSE 618240.1182 462681.7646 386953.7081 716745.9197 436819.7494 410146.1837 461629.8352 356920.5335 404680.8365 665534.3864 0.928937904 0.695203395 0.581418055 1.07694799 0.656344373 0.616265954 0.693622816 0.536291649 0.608053986 1 19.34415368 -4.25983499 23.12755404 0.704791729 0.928938073 0.11708452 0.170005994 104.2700101 1502642.994 0.041858227 0.256461481 5.50E-05 4.25983499 0.224146345 LSAS(ph)PPK ddPTM_HeLa_A486_30min_R1 2 LSASPPK 7 0 H0YCV3;Q8TEY7-3;Q8TEY7-2;Q8TEY7 H0YCV3 USP33 Ubiquitin carboxyl-terminal hydrolase 33 1 0 LSAS(1)PPK;LSAS(1)PPK ; 94.85 0.005721 339260000 604750 632270 324360 311300 455640 633090 746740 660250 471360 880550 TRUE FALSE FALSE 562360.1479 582166.6225 449960.8787 724722.1322 398489.3825 554985.7926 559897.7538 509925.4882 512217.8643 660054.5486 0.851990414 0.881997744 0.681702565 1.09797309 0.603721894 0.840818071 0.848259822 0.772550525 0.776023535 1 19.33222573 -10.70000076 2.359296759 1.035719671 0.817415781 0.163885865 0.12384952 9662415.4 6910786.496 2048445.073 0.029929223 2.00E-11 10.70000076 -0.218303891 LSAS(ph)SEDISER ddPTM_HeLa_A485_30min_R1 1 LSASSEDISER 11 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 LS(0.005)AS(0.917)S(0.077)EDISER 71.268 0.0077517 0 39380 81437 187590 37817 131960 75241 73698 78264 119740 63475 TRUE FALSE FALSE 48139.94514 90960.34874 256987.3473 39882.84695 118821.5991 79180.50242 57951.82024 59069.63129 143770.7197 47651.85067 1.010242928 1.908852384 5.393019235 0.836963232 2.493535873 1.661645903 1.216150463 1.239608335 3.017106737 1 15.54024463 LSASSSIS(ph)SADLFEEPR ddPTM_HeLa_A485_30min_R1 1 LSASSSISSADLFEEPR 17 0 H0Y6A0;Q9NP61-2;Q9NP61 H0Y6A0 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 1 0 LSASSS(0.001)IS(0.799)S(0.199)ADLFEEPR 139.88 1.89E-06 36462000 28577 33929 43992 23595 31637 21064 24388 31951 20837 27122 TRUE FALSE FALSE 34933.85506 37896.70141 60266.47146 24883.9351 28487.1092 22166.87847 19177.30457 24114.96715 25018.79477 20360.98454 1.715725238 1.861241107 2.959899671 1.222138107 1.399102737 1.088693841 0.941865288 1.18437137 1.228761542 1 14.3135197 -5.400427952 9.210266887 1.152904906 2.146144954 0.674653419 0.326857258 0.202628857 14.36560577 0.09301328 0.138023205 3.98E-06 5.400427952 0.993240047 LSASTASELS(ph)PK ddPTM_HeLa_A485_30min_R1 4 LSASTASELSPK 12 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 LSASTASELS(1)PK;LSASTAS(0.002)ELS(0.998)PK;LSASTASELS(1)PK;LSASTAS(0.002)ELS(0.998)PK ;;; 303.29 3.38E-50 5398600000 3319960 2806240 2054010 5439600 4156040 3111680 5058370 4614250 2455380 7228100 TRUE FALSE FALSE 4058473.648 3134405.357 2813873.773 5736751.574 3742250.065 3274602.753 3977607.926 3482597.953 2948152.244 5426267.693 0.747930968 0.577635593 0.518565234 1.057218681 0.689654524 0.603472394 0.733028327 0.641803565 0.543311243 1 22.37152879 -11.42979078 2.328340927 4.194271547 0.681154119 0.30361975 0.145733219 6491420.984 714233.8599 109808950.8 0.038760763 3.72E-12 11.42979078 -3.513117429 LSASTASELS(ph)PK ddPTM_HeLa_A486_30min_R1 4 LSASTASELSPK 12 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 LSASTAS(0.001)ELS(0.999)PK;LSASTASELS(1)PK;LSASTASELS(1)PK;LSASTASELS(1)PK ;;; 245.93 4.81E-28 5722710000 3871820 3610870 1619020 2564500 3271040 3772720 5333870 4871780 2733370 6330590 TRUE FALSE FALSE 3600425.412 3324731.511 2245947.903 5970285.603 2860755.662 3307280.165 3999279.31 3762582.044 2970300.712 4745369.059 0.758724004 0.700626541 0.473292567 1.258128826 0.602852091 0.696948988 0.84277519 0.792895557 0.625936713 1 22.17808886 -11.45845948 2.134778184 3.346186998 0.753648865 0.126287493 0.196897328 12531942.77 673223.4985 142975061.4 0.048332871 3.48E-12 11.45845948 -2.592538134 LSDDFDS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 LSDDFDSPVK 10 0 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LSDDFDS(1)PVK 140.39 1.35E-05 42785000 108100 134280 60822 48077 103770 147240 177800 153690 103500 183390 TRUE FALSE FALSE 100522.7482 123639.1638 84373.90727 111925.6857 90754.19898 129075.0258 133312.5594 118698.142 112471.4633 137467.9503 0.731244977 0.899403559 0.61377148 0.814194766 0.660184419 0.938946318 0.969771929 0.863460477 0.818164984 1 17.06873578 -6.275516305 24.92305356 0.91276648 0.749098188 0.497972285 0.087345412 704.6087203 1247498.814 0.030068131 0.026646022 5.30E-07 6.275516305 -0.163668292 LSDDFDS(ph)PVKGPLCK ddPTM_HeLa_A485_30min_R1 2 LSDDFDSPVKGPLCK 15 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LSDDFDS(1)PVKGPLCK;LSDDFDS(1)PVKGPLCK ; 208.86 5.86E-26 2642100000 2624000 1924130 1460700 4211200 3140700 2549900 4466400 3990500 2214230 5336900 TRUE FALSE FALSE 3207699.747 2149140.266 2001073.715 4441247.193 2828000.88 2683408.821 3512117.153 3011823.618 2658605.651 4006509.048 0.800622115 0.536412183 0.499455683 1.108507965 0.705851615 0.669762326 0.876602826 0.751732639 0.663571608 1 21.9339143 -14 0.153779481 1.901480669 0.661375548 0.181433385 0.16500284 244.1628492 2.200339858 68.05893231 0.807215767 1.00E-14 14 -1.240105121 LSDDFDS(ph)PVKGPLCK ddPTM_HeLa_A486_30min_R1 2 LSDDFDSPVKGPLCK 15 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LSDDFDS(1)PVKGPLCK;LSDDFDS(1)PVKGPLCK ; 242.18 1.46E-41 3176500000 2679530 2732770 1098140 1755910 2356230 3607900 4314490 4100920 2295600 4951780 TRUE FALSE FALSE 2491708.784 2516215.353 1523369.217 4087847.219 2060689.662 3162793.98 3234958.968 3167230.038 2494584.456 3711822.057 0.671289934 0.677892236 0.410410088 1.101304738 0.555169302 0.852086639 0.87152857 0.853281755 0.672064667 1 21.82369612 -2.829690178 0.095221825 1.123085801 4.48E-12 0.214006801 0.175036872 147.3398338 1.508135326 3.170415301 22.01722819 0.001480164 2.829690178 -1.123085801 LSDFLITGGGKGS(ph)GFSLDVIDGPISQR ddPTM_HeLa_A485_30min_R1 1 LSDFLITGGGKGSGFSLDVIDGPISQR 27 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LSDFLITGGGKGS(1)GFSLDVIDGPISQR 155.15 9.19E-10 259500000 222540 246320 206620 253240 317080 261080 335670 320840 216090 353410 TRUE FALSE FALSE 272043.2552 275124.9813 283057.3362 267073.86 285510.4019 274749.7451 263951.3623 242153.4869 259457.2809 265311.391 1.025373446 1.036988952 1.066887234 1.00664302 1.076133221 1.035574628 0.99487384 0.912714249 0.977934946 1 18.01732709 -6.90740323 3.494897426 0.958024703 1.042340306 0.613672995 0.027763005 0.138759013 3.321700194 0.012063027 0.007690653 1.24E-07 6.90740323 0.084315603 LSDFLITGGGKGS(ph)GFSLDVIDGPISQR ddPTM_HeLa_A486_30min_R1 1 LSDFLITGGGKGSGFSLDVIDGPISQR 27 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LSDFLIT(0.006)GGGKGS(0.994)GFSLDVIDGPISQR 233.58 4.54E-40 403930000 421710 456730 297190 202460 486190 499460 511360 545090 353570 501230 TRUE FALSE FALSE 392150.3067 420537.0514 412269.927 471337.1118 425207.5167 437841.7033 383412.3194 420984.9062 384217.7323 375718.7455 1.043733674 1.119286851 1.097283359 1.254494532 1.131717599 1.165344313 1.02047695 1.120478845 1.022620609 1 18.51929357 -7.531857503 0.944839824 1.00394015 1.134444387 0.345919556 0.060174788 0.631470585 1.071803703 0.057225395 0.021456414 2.94E-08 7.531857503 0.130504237 LSDGVAVLK ddPTM_HeLa_A485_30min_R1 2 LSDGVAVLK 9 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 147.19 0.00038655 90007000 169143 190581 146880 178719 217882 215052 233050 266710 160766 304260 FALSE FALSE TRUE 206768.2768 212867.7901 201217.0242 188481.9664 196188.903 226311.7902 183256.9637 201298.9543 193030.2616 228413.5815 0.90523635 0.931940162 0.880932836 0.825178456 0.858919604 0.990798309 0.802303271 0.881291528 0.845090998 1 17.80128891 LSDLLAPISEQIK ddPTM_HeLa_A485_30min_R1 2 LSDLLAPISEQIK 13 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 ; ; 140.24 0.00017557 19831600 34275 31671 35047 41521 44546 39675 51543 47949 32644 63955 FALSE FALSE TRUE 41899.3555 35374.64795 48012.34373 43789.18709 40110.84383 41752.32165 40530.41698 36189.43257 39195.35137 48012.1955 0.872681515 0.736784635 1.000003087 0.912043006 0.835430319 0.869619088 0.844169207 0.753755003 0.816362405 1 15.55111329 -6.832090112 4.559370226 0.831828624 0.871188121 0 0.085012377 0.83147745 32.90396998 0.036437323 0.024487594 1.47E-07 6.832090112 0.039359497 LSDPLLPS(ph)PEDETGSLVHLEDPER ddPTM_HeLa_A485_30min_R1 1 LSDPLLPSPEDETGSLVHLEDPER 24 0 Q8WYL5-4;Q8WYL5;Q8WYL5-2;Q8WYL5-5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 LSDPLLPS(0.927)PEDET(0.036)GS(0.036)LVHLEDPER 77.984 0.0046249 26534000 30970 37521 34960 28546 41089 31476 38881 38222 29853 42104 TRUE FALSE FALSE 37859.16965 41908.75456 47893.15881 30105.3957 36998.03489 33124.03469 30573.75672 28847.99457 35844.22327 31608.24767 1.197762371 1.325880353 1.515210818 0.952453803 1.170518381 1.047955427 0.967271487 0.912673011 1.134014883 1 14.94801344 -5.272325793 24.99976311 1.02721163 1.344244102 0.6687138 0.103169265 417.5505605 958870.0334 0.029520747 0.044279467 5.34E-06 5.272325793 0.317032472 LSDPLLPS(ph)PEDETGSLVHLEDPER ddPTM_HeLa_A486_30min_R1 2 LSDPLLPSPEDETGSLVHLEDPER 24 0 Q8WYL5-4;Q8WYL5;Q8WYL5-2;Q8WYL5-5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 LSDPLLPS(1)PEDETGSLVHLEDPER;LSDPLLPS(0.924)PEDET(0.038)GS(0.038)LVHLEDPER ; 125.12 4.21E-06 53980000 47163 56912 43391 13038.5 55533 49565 54115 49043 44105 52175 TRUE FALSE FALSE 43857.11725 52402.08585 60193.15725 30354.28693 48567.53332 43450.17424 40574.85463 37876.9795 47928.05691 39110.0404 1.121377447 1.339862739 1.539071723 0.776125175 1.241817519 1.110972369 1.037453662 0.968472012 1.225466822 1 15.25525141 -5.251151883 24.99997672 1.059984921 1.334079825 0.406123033 0.156013267 720.1923534 1750159.005 0.041452259 0.070801482 5.61E-06 5.251151883 0.274094904 LSDPPTSPSS(ph)PSQMMPHVQTHF ddPTM_HeLa_A486_30min_R1 2 LSDPPTSPSSPSQMMPHVQTHF 22 0 Q13496;Q13496-2 Q13496 MTM1 Myotubularin 1 0 LS(0.001)DPPT(0.215)S(0.197)PS(0.181)S(0.368)PS(0.039)QMMPHVQTHF;LSDPPT(0.012)S(0.01)PS(0.216)S(0.719)PS(0.043)QMMPHVQTHF ; 90.397 0.0011599 302270000 183146 182413 221810 41919 294690 159577 204881 200489 177729 185098 TRUE FALSE FALSE 170308.4112 167957.9295 307700.7723 97589.55047 257727.2323 139890.0122 153617.6068 154842.0313 193134.6928 138748.256 1.227463437 1.210522816 2.217691098 0.703356952 1.857516914 1.008228977 1.107167839 1.115992631 1.391979246 1 17.08211011 LSDS(ph)PSMGR ddPTM_HeLa_A485_30min_R1 6 LSDSPSMGR 9 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 LSDS(1)PSMGR;LS(0.001)DS(0.998)PS(0.001)MGR;LS(0.006)DS(0.993)PS(0.001)MGR;LS(0.002)DS(0.998)PSMGR;LSDS(0.999)PS(0.001)MGR;LSDS(1)PSMGR ;;;;; 204.56 6.58E-10 4231480000 3445190 3570040 2506030 4068140 2781670 3897810 4688600 4152590 3156360 7641350 TRUE FALSE FALSE 4211560.63 3987525.123 3433114.782 4290372.187 2504717.168 4101893.304 3686842.308 3134160.791 3789812.5 5736502.074 0.734168763 0.695114387 0.598468324 0.747907371 0.436627955 0.715051307 0.642698679 0.546353989 0.660648676 1 22.45173987 -10.53714118 3.728055503 1.006798041 0.638627658 0.585815535 0.090296215 304076663.9 59560365.18 17313338.55 0.021072097 2.90E-11 10.53714118 -0.368170383 LSDS(ph)PSMGR ddPTM_HeLa_A486_30min_R1 4 LSDSPSMGR 9 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 LSDS(0.982)PS(0.017)MGR;LS(0.008)DS(0.972)PS(0.02)MGR;LS(0.001)DS(0.999)PSMGR;LS(0.001)DS(0.999)PSMGR ;;; 192.44 1.08E-08 3187830000 2091110 2221420 1981230 649470 2952950 2441900 2142620 2075200 2456500 3132440 TRUE FALSE FALSE 1944533.988 2045386.589 2748415.315 1511998.982 2582563.476 2140643.205 1606513.814 1602722.261 2669431.398 2348056.635 0.828146118 0.871097638 1.170506398 0.643936334 1.099872736 0.911665917 0.684188699 0.682573937 1.136868403 1 21.16303578 -6.549279545 24.9956198 0.842094416 0.926887935 0.000850432 0.185581434 831.9653996 787676.7474 0.069052173 0.053488986 2.82E-07 6.549279545 0.084793519 LSDS(ph)PSMKK ddPTM_HeLa_A485_30min_R1 2 LSDSPSMKK 9 1 F6VRR5;Q9BY77-2;Q9BY77 F6VRR5 POLDIP3 Polymerase delta-interacting protein 3 1 0 LSDS(0.999)PS(0.001)MKK;LSDS(1)PSMKK ; 138.63 8.98E-05 1613220000 2017870 1522010 999390 2685800 2208020 2167150 3332900 3598300 1579760 3679200 TRUE FALSE FALSE 2466738.22 1699995.83 1369105.949 2832518.453 1988181.776 2280618.623 2620798.688 2715811.283 1896803.342 2762043.151 0.893084606 0.615484892 0.495685938 1.025515641 0.719822851 0.825699853 0.948862326 0.983261714 0.686739214 1 21.39730443 -5.264464146 24.99955235 0.876972978 0.662825123 0.327748321 0.14155423 310.0596986 2562633.841 0.039049877 0.060850875 5.44E-06 5.264464146 -0.214147854 LSDS(ph)PSMKK ddPTM_HeLa_A486_30min_R1 3 LSDSPSMKK 9 1 F6VRR5;Q9BY77-2;Q9BY77 F6VRR5 POLDIP3 Polymerase delta-interacting protein 3 1 0 LS(0.003)DS(0.996)PS(0.001)MKK;LSDS(0.99)PS(0.01)MKK;LSDS(0.991)PS(0.009)MKK ;; 144.57 6.12E-05 2019240000 3970900 3479260 1462300 2119260 3198570 4237000 5679600 5265200 2673260 6004800 TRUE FALSE FALSE 3692560.416 3203550.766 2028541.722 4933744.381 2797375.525 3714282.019 4258504.007 4066428.899 2904980.329 4501158.995 0.820357694 0.711716864 0.450670977 1.096105333 0.621478941 0.825183474 0.946090554 0.903418187 0.645384962 1 22.1018651 -5.255658133 24.99814056 0.850381478 0.665995373 0.243260061 0.161887845 746.0837977 3226061.097 0.043265355 0.072440234 5.55E-06 5.255658133 -0.184386105 LSDVDANT(ph)AIKHEEQSNEDIPIAEQSSK ddPTM_HeLa_A486_30min_R1 1 LSDVDANTAIKHEEQSNEDIPIAEQSSK 28 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LS(0.41)DVDANT(0.578)AIKHEEQS(0.012)NEDIPIAEQSSK 105.48 0.00045682 165380000 51864 58008 20410 27658 53684 69138 80697 83492 47187 98931 TRUE FALSE FALSE 48228.60143 53411.23482 28313.2986 64389.22176 46950.45214 60608.4565 60505.75707 64482.69422 51277.20715 74158.03367 0.650348978 0.720235316 0.381796782 0.868270349 0.633113498 0.817287804 0.815902932 0.869530798 0.69145856 1 16.17831537 -6.039687398 0.920902438 0.84582522 0.613575221 0.348070578 0.130905603 0.674810544 1.247066206 0.069636325 0.081029662 9.13E-07 6.039687398 -0.23225 LSDVDANTAIKHEEQS(ph)NEDIPIAEQSSK ddPTM_HeLa_A485_30min_R1 3 LSDVDANTAIKHEEQSNEDIPIAEQSSK 28 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LSDVDANTAIKHEEQS(1)NEDIPIAEQSSK;LSDVDANT(0.001)AIKHEEQS(0.999)NEDIPIAEQSSK;LS(0.168)DVDANT(0.151)AIKHEEQS(0.681)NEDIPIAEQSSK ;; 138.7 7.34E-07 2181890000 586378 467069 385209 919274 799034 766017 1229786 1331260 592619 1434630 TRUE FALSE FALSE 716815.7631 521688.6566 527713.839 969491.6109 719479.3694 806124.4656 967032.1747 1004766.398 711552.1975 1077003.143 0.665565154 0.484389168 0.489983564 0.900175284 0.668038319 0.748488498 0.897891692 0.932928008 0.660677921 1 20.03859103 -5.257682586 24.99740542 0.819664406 0.54042027 0.558056372 0.115164609 242.8821155 1616111.389 0.031316091 0.051693128 5.52E-06 5.257682586 -0.279244136 LSDVDANTAIKHEEQS(ph)NEDIPIAEQSSK ddPTM_HeLa_A486_30min_R1 2 LSDVDANTAIKHEEQSNEDIPIAEQSSK 28 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LSDVDANT(0.001)AIKHEEQS(0.999)NEDIPIAEQSSK;LS(0.003)DVDANT(0.013)AIKHEEQS(0.985)NEDIPIAEQSSK ; 184.38 1.47E-20 1469110000 885270 813750 396448 467235 878480 1095770 1533390 1386960 647096 1415740 TRUE FALSE FALSE 823217.1445 749265.4864 549963.2828 1087746.693 768292.8469 960585.0384 1149719.603 1071179.485 703186.8023 1061229.489 0.775720193 0.706035305 0.518232191 1.024987247 0.723964849 0.905162407 1.083384523 1.009375914 0.662615211 1 20.01730524 -5.267478225 24.99413575 0.914598256 0.670599836 0.403460837 0.138707707 497.4915809 2059064.914 0.039364428 0.060138568 5.40E-06 5.267478225 -0.243998419 LSEAVWQPEEHYS(ph)SSPEK ddPTM_HeLa_A485_30min_R1 1 LSEAVWQPEEHYSSSPEK 18 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 LSEAVWQPEEHY(0.222)S(0.259)S(0.259)S(0.259)PEK 68.919 0.004826 171000000 140050 161010 143240 117150 150420 202510 160650 218040 165660 130490 TRUE FALSE FALSE 171203.6393 179838.7189 196230.4367 123549.6079 135443.6566 213113.1105 126325.8151 164565.3481 198906.4425 97961.24449 1.747667052 1.835814968 2.003143567 1.261209048 1.382624908 2.175483903 1.2895489 1.679902588 2.030460551 1 16.57992348 -10.90247273 2.638390715 0.612330729 1.701332187 0.333371225 0.301624835 41108201.9 28625407.22 99324055.3 0.078041993 1.25E-11 10.90247273 1.089001458 LSEAVWQPEEHYSS(ph)SPEK ddPTM_HeLa_A485_30min_R1 2 LSEAVWQPEEHYSSSPEK 18 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 LSEAVWQPEEHYS(0.014)S(0.587)S(0.399)PEK;LSEAVWQPEEHY(0.002)S(0.019)S(0.49)S(0.49)PEK ; 128.12 7.43E-06 181540000 256790 338350 270770 184980 454480 260899 410740 367670 277540 382410 TRUE FALSE FALSE 313912.0496 377917.0892 370939.0907 195084.989 409230.3754 274559.2682 322982.0436 277498.356 333239.7323 287082.2247 1.093456935 1.316407136 1.292100516 0.67954395 1.425481413 0.956378503 1.12505065 0.966616294 1.160781489 1 18.13110448 LSEAVWQPEEHYSS(ph)SPEK ddPTM_HeLa_A486_30min_R1 1 LSEAVWQPEEHYSSSPEK 18 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 LSEAVWQPEEHYS(0.013)S(0.493)S(0.493)PEK 140.73 4.29E-07 198680000 162750 162940 117000 18496 164620 140600 173690 149510 136460 111330 TRUE FALSE FALSE 151342.0654 150028.041 162305.5334 43059.62274 143971.8246 123254.2015 130230.9249 115469.8368 148288.4627 83452.24336 1.813517041 1.797771215 1.944891196 0.515979212 1.725200172 1.476942938 1.560544326 1.383663664 1.77692602 1 16.34866321 -1.000000002 0.036438302 2.96E-13 3.860243696 0.145554031 0.386502705 2129.583157 5.938092446 182.0071807 532.3362732 0.1 1.000000002 3.860243696 LSEAVWQPEEHYSSS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 LSEAVWQPEEHYSSSPEK 18 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 LSEAVWQPEEHYS(0.001)S(0.033)S(0.966)PEK 215.79 2.18E-34 670850000 408480 553770 455230 290510 739580 451210 740300 656080 467050 652190 TRUE FALSE FALSE 499344.9668 618528.5843 623638.5207 306379.8257 665944.8184 474834.6579 582128.8573 495175.3513 560782.651 489611.0357 1.019880947 1.263306052 1.273742778 0.625761683 1.360150752 0.96982017 1.18896188 1.011364768 1.145363585 1 18.90127655 -7.52824058 0.011311695 6.76E-07 2.146898093 0.015217579 0.198130628 4507.463305 50.92162116 4839.970852 4814.783573 2.96E-08 7.52824058 2.146897417 LSEAVWQPEEHYSSS(ph)PEK ddPTM_HeLa_A486_30min_R1 4 LSEAVWQPEEHYSSSPEK 18 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 LSEAVWQPEEHYS(0.003)S(0.167)S(0.829)PEK;LSEAVWQPEEHYS(0.001)S(0.148)S(0.852)PEK;LSEAVWQPEEHYS(0.002)S(0.127)S(0.871)PEK;LSEAVWQPEEHYS(0.005)S(0.255)S(0.74)PEK ;;; 228.62 6.40E-35 1364972000 1462149 1545020 978010 124941 1535377 1274055 1672082 1502104 1315216 812399 TRUE FALSE FALSE 1359659.906 1422586.988 1356721.664 290868.9622 1342795.7 1116875.048 1253709.398 1160107.71 1429219.982 608969.0026 2.232724326 2.336058128 2.227899381 0.477641655 2.205031281 1.834042526 2.058740909 1.905035733 2.346950298 1 19.21600927 -5.037710096 24.99525388 1.738104623 2.28379035 0.19219274 0.535490079 934.5853623 619467.2018 0.144450078 0.250275947 9.17E-06 5.037710096 0.545685727 LSEEAECPNPS(ph)TPSK ddPTM_HeLa_A485_30min_R1 2 LSEEAECPNPSTPSK 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 LSEEAECPNPS(0.675)T(0.325)PSK;LSEEAECPNPS(0.5)T(0.5)PSK ; 182.57 8.73E-18 745470000 657200 508330 410620 742010 721000 555500 796660 703360 434630 940760 TRUE FALSE FALSE 803391.8727 567774.7716 562525.4253 782544.1274 649214.7084 584585.121 626447.0829 530859.8572 521856.2543 706245.8454 1.137552706 0.803933609 0.796500863 1.108033601 0.919247473 0.827736014 0.887009937 0.751664397 0.738915857 1 19.42981095 -6.206519141 4.636819717 0.828042337 0.946321261 0.167705468 0.123507085 0.406538834 18.76196716 0.042284753 0.041604491 6.22E-07 6.206519141 0.118278925 LSEEAECPNPST(ph)PSK ddPTM_HeLa_A486_30min_R1 2 LSEEAECPNPSTPSK 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 LSEEAECPNPS(0.015)T(0.969)PS(0.015)K;LSEEAECPNPS(0.025)T(0.896)PS(0.078)K ; 286.73 3.04E-58 490820000 604230 616900 323090 265740 571730 643700 795510 719630 459790 713260 TRUE FALSE FALSE 561876.5972 568014.5973 448199.1007 618656.1498 500018.2922 564286.8387 596464.984 555785.9584 499644.9674 534655.0535 1.050914218 1.062394517 0.838295828 1.157112695 0.935216621 1.055422248 1.115607119 1.039522501 0.934518367 1 19.02824887 LSEGPAAMAGPGS(ph)PPR ddPTM_HeLa_A485_30min_R1 3 LSEGPAAMAGPGSPPR 16 0 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 LSEGPAAMAGPGS(1)PPR;LSEGPAAMAGPGS(1)PPR;LSEGPAAMAGPGS(1)PPR ;; 235.53 2.57E-41 839420000 364490 468610 402010 414100 527030 429670 566560 525020 437040 583320 TRUE FALSE FALSE 445569.543 523409.8631 550730.228 436721.2344 474557.0427 452166.8568 445509.8276 396258.0218 524749.9192 437909.0592 1.017493321 1.195247854 1.25763607 0.997287508 1.083688571 1.032558809 1.017356956 0.904886559 1.198307978 1 18.74027177 -5.280052539 24.93512285 1.030864582 1.16063797 0.284678872 0.089476462 920.3650427 1232964.745 0.024628917 0.036597859 5.25E-06 5.280052539 0.129773388 LSEGPAAMAGPGS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 LSEGPAAMAGPGSPPR 16 0 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 LSEGPAAMAGPGS(1)PPR 227.86 4.14E-34 158140000 144330 156260 114620 52960 172340 132920 144330 158010 143020 149410 TRUE FALSE FALSE 134213.2123 143877.3885 159003.9336 123293.5565 150723.5102 116521.6818 108217.1074 122034.5723 155417.0888 111996.7635 1.198366882 1.284656663 1.419719005 1.100867138 1.345784516 1.040402224 0.966252096 1.089625883 1.387692679 1 16.77309752 -6.265885456 24.98962628 1.094237286 1.269634746 0.297935864 0.13281859 514.8312059 2893651.23 0.046536744 0.04247232 5.42E-07 6.265885456 0.17539746 LSEGPAAMAGPGS(ph)PPRR ddPTM_HeLa_A485_30min_R1 2 LSEGPAAMAGPGSPPRR 17 1 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 LSEGPAAMAGPGS(1)PPRR;LSEGPAAMAGPGS(1)PPRR ; 132.01 6.50E-06 641590000 237940 191618 169667 332102 274520 335560 337570 434880 198703 566530 TRUE FALSE FALSE 290868.9321 214026.0582 232433.8837 350243.8913 247187.8249 353129.4027 265445.4118 328224.9981 238580.8695 425304.4972 0.683907492 0.503230179 0.5465117 0.823513256 0.581202001 0.830297834 0.624130273 0.771741188 0.560964841 1 18.69813658 -14 0.196629634 2.47275402 0.605265197 0.448580406 0.112264365 126.7090978 1.249264728 73.52463355 0.274946263 1.00E-14 14 -1.867488823 LSEGPAAMAGPGS(ph)PPRR ddPTM_HeLa_A486_30min_R1 2 LSEGPAAMAGPGSPPRR 17 1 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 LSEGPAAMAGPGS(1)PPRR;LSEGPAAMAGPGS(1)PPRR ; 104.95 0.00012793 653810000 380060 323190 176872 180590 257290 484020 456860 437100 222850 765270 TRUE FALSE FALSE 353419.7566 297579.2474 245361.5752 420422.6465 225018.2891 424306.5336 342548.7958 337581.8718 242166.8174 573641.4109 0.616098751 0.518754821 0.427726399 0.732901493 0.39226298 0.739672076 0.597147956 0.588489369 0.42215714 1 19.12978965 -10.83196686 2.788631247 1.148943723 0.561840825 0.56598418 0.115714143 21966112.19 17807346.38 22028130.82 0.027337826 1.47E-11 10.83196686 -0.587102898 LSEGS(ph)QPAEEEEDQETPSR ddPTM_HeLa_A485_30min_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LSEGS(1)QPAEEEEDQETPSR;LSEGS(1)QPAEEEEDQETPSR ; 333.75 6.64E-124 0 78580 107905 102887 82571 118398 99234 119465 120117 89583 99606 TRUE FALSE FALSE 96059.8499 120523.5511 140949.1828 87081.64465 106609.8794 104429.7388 93940.32681 90658.11741 107561.4864 74776.05731 1.28463379 1.611793339 1.884950716 1.164565875 1.425722126 1.396566529 1.256288847 1.212394992 1.438448218 1 16.19028878 -7.868866221 0.186696511 0.848181648 1.675444324 0.341429803 0.191394584 4.559156096 0.727452879 1.481825935 1.082440343 1.35E-08 7.868866221 0.827262676 LSEGSQPAEEEEDQET(ph)PSR ddPTM_HeLa_A485_30min_R1 1 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LSEGSQPAEEEEDQET(0.998)PS(0.002)R 191.95 7.27E-18 141890000 26791 34136 32934 19660 40848 31054 33432 38497 34671 26447 TRUE FALSE FALSE 32750.56552 38127.90826 45117.6571 20733.97602 36781.02969 32679.93942 26288.98009 29055.55039 41629.15168 19854.24962 1.649549399 1.920390293 2.272443329 1.044309224 1.852551992 1.64599217 1.324098396 1.463442384 2.096737599 1 14.27716022 -11.80685535 0.174376525 8.98E-24 1.862307635 0.240935372 0.351342154 83.25474379 1.599420813 34.79714639 1.331462137 1.56E-12 11.80685535 1.862307635 LSEGSQPAEEEEDQET(ph)PSR ddPTM_HeLa_A486_30min_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LSEGSQPAEEEEDQET(0.772)PS(0.228)R;LSEGSQPAEEEEDQET(0.933)PS(0.067)R ; 433.94 1.78E-182 242720000 100413 130802 119854 36587 149407 104780 105297 112571 104288 104104 TRUE FALSE FALSE 93374.56723 120436.7731 166264.6786 85176.385 130666.9809 91853.30892 78950.57688 86941.04071 113327.7678 78035.6808 1.196562473 1.543355192 2.130623798 1.091505631 1.674451732 1.177068079 1.011724074 1.114119078 1.452255771 1 16.25184631 -6.311832733 8.247071808 1.148453449 1.537323463 0.30104173 0.286475399 0.450000706 68.79275735 0.100990996 0.089238393 4.88E-07 6.311832733 0.388870013 LSELLR ddPTM_HeLa_A485_30min_R1 1 LSELLR 6 0 P08238;P07900;P07900-2;A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 P08238;P07900;A0A669KBG8;Q92538-3 HSP90AB1;HSP90AA1;GBF1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 0 0 146.21 0.012589 82602000 117770 148210 153200 116390 186130 144870 182030 170710 126990 158820 FALSE FALSE TRUE 143967.5302 165541.8702 209875.0552 122748.091 167598.2437 152455.1692 143137.8035 128843.1048 152475.7282 119229.0969 1.207486545 1.388435161 1.760267088 1.029514558 1.405682405 1.278674193 1.200527449 1.080634746 1.278846625 1 16.86337683 -7.040473766 0.431490681 1.023577388 1.418072034 0.267509678 0.181108151 1.415898299 0.644315483 0.198160925 0.178610092 9.11E-08 7.040473766 0.394494647 LSELSNSQQSVQTLSLWLIHHR ddPTM_HeLa_A485_30min_R1 2 LSELSNSQQSVQTLSLWLIHHR 22 0 Q9NQG5;E9PQF3;K7EQR8;E9PIQ9;A0A0C4DGQ6;Q96P16 Q9NQG5 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A 0 0 ; ; 147.53 1.18E-12 20128200 7140.1 9243.3 10780.2 10499.5 13106.3 9639.3 11313.7 13234.6 8860.8 14447.8 FALSE FALSE TRUE 8728.390612 10324.22353 14768.24458 11073.0611 11801.39075 10143.99884 8896.435571 9988.793599 10639.08128 10846.22935 0.804739632 0.951872139 1.361601724 1.02091342 1.088063913 0.935255794 0.82023303 0.92094619 0.980901375 1 13.40490596 -6.320441994 6.256630664 0.918518895 1.056342123 0.140783785 0.137855574 0.429267392 35.5970675 0.051406322 0.045450506 4.78E-07 6.320441994 0.137823228 LSELSNSQQSVQTLSLWLIHHR ddPTM_HeLa_A486_30min_R1 1 LSELSNSQQSVQTLSLWLIHHR 22 0 Q9NQG5;E9PQF3;K7EQR8;E9PIQ9;A0A0C4DGQ6;Q96P16 Q9NQG5 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A 0 0 136.04 6.95E-10 8241900 4398.6 6097.3 5637.8 2171.6 6545 5630 6475.9 5592.5 6552.1 6149.5 FALSE FALSE TRUE 4090.280854 5614.127742 7820.907146 5055.594547 5724.06507 4935.427842 4855.561325 4319.209833 7120.041303 4609.625173 0.887334805 1.217914154 1.696647092 1.096747427 1.241763669 1.070678777 1.053352744 0.936998058 1.544603094 1 12.17043373 -5.867399809 2.225153862 1.117894135 1.263447078 0.03533115 0.243936745 0.98014021 9.920430801 0.085349109 0.101886011 1.36E-06 5.867399809 0.145552943 LSFASETPLEKEPHS(ph)PADQPEQQAESTLTSAETR ddPTM_HeLa_A485_30min_R1 3 LSFASETPLEKEPHSPADQPEQQAESTLTSAETR 34 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 0 LS(0.001)FASETPLEKEPHS(0.998)PADQPEQQAESTLTSAETR;LS(0.002)FAS(0.002)ET(0.002)PLEKEPHS(0.994)PADQPEQQAESTLTSAETR;LSFASET(0.001)PLEKEPHS(0.999)PADQPEQQAESTLTSAETR ;; 169.96 1.04E-14 1419590000 226346 332399 297861 249913 438869 351833 431335 517660 285692 393036 TRUE FALSE FALSE 276695.8868 371270.1716 408052.1789 263565.1144 395173.6614 370254.4318 339176.7536 390703.0733 343027.7639 295059.3585 0.937763466 1.258289767 1.382949455 0.893261328 1.339302246 1.254847275 1.149520406 1.324150758 1.162572052 1 18.17064569 -4.2545159 23.93014912 1.207459731 0.937763233 0.216028158 0.146204383 651.6585488 2252268.831 0.034496126 0.325457498 5.57E-05 4.2545159 -0.269696497 LSFASETPLEKEPHS(ph)PADQPEQQAESTLTSAETR ddPTM_HeLa_A486_30min_R1 3 LSFASETPLEKEPHSPADQPEQQAESTLTSAETR 34 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 0 LSFASETPLEKEPHS(1)PADQPEQQAESTLTSAETR;LSFAS(0.002)ET(0.009)PLEKEPHS(0.989)PADQPEQQAESTLTSAETR;LS(0.019)FAS(0.018)ET(0.017)PLEKEPHS(0.946)PADQPEQQAESTLTSAETR ;; 285.14 1.13E-78 2428820000 515875 547384 485246 224825 738307 554920 731265 753638 466028 623878 TRUE FALSE FALSE 479714.8265 504007.2983 673146.2465 523403.962 645701.6516 486459.6124 548294.7625 582051.0792 506423.6823 467654.888 1.025788116 1.077733412 1.439408127 1.119209861 1.380722554 1.040210687 1.17243458 1.244616691 1.082900436 1 18.83508474 LSFLVSYIASK ddPTM_HeLa_A485_30min_R1 2 LSFLVSYIASK 11 0 A0A1B0GVU9;P47897;A0A0U1RQM8;A0A0U1RQU2;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165;A0A0U1RQT0 A0A1B0GVU9 QARS Glutamine--tRNA ligase 0 0 ; ; 175.86 1.26E-08 13572000 18479.6 18155.6 16756.4 25228 28995 14994.7 21157.3 21052 11893.9 31539 FALSE FALSE TRUE 22590.32327 20278.73949 22955.28965 26606.14176 26108.15599 15779.79931 16636.87002 15888.96399 14280.89663 23676.90773 0.954107839 0.856477531 0.969522284 1.123716917 1.102684366 0.66646369 0.702662282 0.671074288 0.603157169 1 14.53119305 -6.269269031 24.88016578 0.70648804 0.998291309 0.551265404 0.122154721 417.9726414 1328181.418 0.043208346 0.038807214 5.38E-07 6.269269031 0.291803269 LSFLVSYIASK ddPTM_HeLa_A486_30min_R1 2 LSFLVSYIASK 11 0 A0A1B0GVU9;P47897;A0A0U1RQM8;A0A0U1RQU2;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165;A0A0U1RQT0 A0A1B0GVU9 QARS Glutamine--tRNA ligase 0 0 ; ; 204.5 5.85E-14 15511700 34071 35213 22937.5 16541 34566 34206 43968 36567 26430 37016 FALSE FALSE TRUE 31682.79884 32422.59364 31819.51429 38508.28394 30230.40996 29986.0115 32966.74135 28241.49235 28720.97368 27746.95267 1.141847872 1.168510071 1.146775095 1.387838311 1.089503785 1.080695666 1.188121152 1.017823207 1.035103711 1 14.76004171 -7.120595245 0.861809885 0.997211085 1.192160224 0.42227161 0.081201636 0.617223962 0.8386195 0.073632563 0.033967489 7.58E-08 7.120595245 0.194949139 LSFMPFFLK ddPTM_HeLa_A486_30min_R1 1 LSFMPFFLK 9 0 Q5VVL7;P11182 Q5VVL7 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" 0 0 133.55 0.0015933 2091800 3147.4 3267.1 2667.7 1400.1 4651.7 4633.1 4488.6 4169.7 4341.2 5097.7 FALSE FALSE TRUE 2926.783513 3008.203097 3700.704883 3259.503557 4068.240411 4061.515228 3365.504804 3220.350334 4717.498711 3821.20274 0.765932538 0.787239857 0.968465987 0.853004611 1.064649192 1.062889227 0.880744895 0.842758302 1.234558602 1 11.89981109 -4.688457617 0.970502161 0.997057323 0.702120441 0.375174 0.110557489 1.264495187 1.502540858 0.039445172 0.340812845 2.05E-05 4.688457617 -0.294936881 LSFQHDPETSVLVLR ddPTM_HeLa_A485_30min_R1 2 LSFQHDPETSVLVLR 15 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 120.7 3.75E-05 77653000 58544 99999 104833 38266.5 118227 73147 87103 112039 79814 75634 FALSE FALSE TRUE 71566.91083 111693.0132 143615.0892 40356.902 106455.9048 76976.86381 68492.73248 84561.25958 95831.9377 56779.83574 1.260428282 1.967124627 2.529332593 0.710761161 1.87488927 1.355707758 1.206286203 1.489283272 1.687781172 1 15.79309106 -5.258001822 24.99985203 1.370845552 1.923778057 0.286172316 0.421626738 407.5752029 2964104.327 0.113560541 0.186916232 5.52E-06 5.258001822 0.552932505 LSFQHDPETSVLVLR ddPTM_HeLa_A486_30min_R1 2 LSFQHDPETSVLVLR 15 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 153.23 3.41E-07 65952000 41191 49328 43837 4177.3 65879 37496 40303 41932 44863 25975.2 FALSE FALSE TRUE 38303.72361 45419.06963 60811.8604 9724.965509 57615.84152 32870.12475 30218.76312 32384.99897 48751.76096 19470.84085 1.967235206 2.332671197 3.123227233 0.499463048 2.959083378 1.688171816 1.552000931 1.663256313 2.503834392 1 14.24902757 -10.71975243 0.162897296 9.76E-15 2.382957332 0.147304912 0.724716609 71.02897581 1.855222978 34.69209844 3.550892109 1.91E-11 10.71975243 2.382957332 LSFS(ph)DSESDNSADSSLPSREPPPPQKPPPPNSK ddPTM_HeLa_A486_30min_R1 1 LSFSDSESDNSADSSLPSREPPPPQKPPPPNSK 33 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 LS(0.119)FS(0.391)DS(0.391)ES(0.094)DNS(0.006)ADSSLPSREPPPPQKPPPPNSK 106.93 4.75E-05 144820000 137300 118910 67797 50692 133430 138140 155300 155490 91752 162210 TRUE FALSE FALSE 127675.979 109487.1385 94049.81407 118013.5378 116693.9652 121097.6913 116442.2974 120088.3213 99705.13724 121591.5602 1.050039812 0.900450149 0.773489656 0.970573432 0.95972093 0.995938296 0.95765115 0.98763698 0.820000476 1 16.89168357 LSFS(ph)PENILIQNQDIVR ddPTM_HeLa_A485_30min_R1 2 LSFSPENILIQNQDIVR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LS(0.032)FS(0.968)PENILIQNQDIVR;LSFS(1)PENILIQNQDIVR ; 248.18 8.35E-43 645530000 227314 318620 305020 270550 347840 314610 362960 380660 284400 342200 TRUE FALSE FALSE 277879.2151 355879.8374 417859.5909 285329.4614 313207.8283 331082.4931 285410.6309 287302.5381 341476.4713 256895.8377 1.081680488 1.385307915 1.626572056 1.110681527 1.219201646 1.288781072 1.11099749 1.118361982 1.329240965 1 17.97082399 LSFS(ph)PENILIQNQDIVR ddPTM_HeLa_A486_30min_R1 3 LSFSPENILIQNQDIVR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LS(0.014)FS(0.986)PENILIQNQDIVR;LSFS(1)PENILIQNQDIVR;LSFS(1)PENILIQNQDIVR ;; 210.2 1.74E-25 579701000 322695 341804 290356 116714.6 387853 311593 356535 366793 300525 309581 TRUE FALSE FALSE 300075.7469 314718.2062 402789.6192 271717.4872 339204.8602 273151.8237 267326.172 283282.2409 326574.749 232059.9026 1.293096065 1.356193822 1.735713989 1.17089374 1.461712499 1.177074629 1.151970543 1.220728949 1.407286418 1 17.82413774 -6.266562726 24.82936056 1.202742561 1.406423996 0.293707841 0.163961095 546.6281034 2649124.871 0.056239566 0.051089126 5.41E-07 6.266562726 0.203681435 LSGEHS(ph)ES(ph)STPRPR ddPTM_HeLa_A486_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 2 0 LS(0.022)GEHS(0.934)ES(0.403)S(0.368)T(0.273)PRPR 63.691 0.022961 1429700000 1043900 1232700 1008500 151550 1384300 1152000 1158000 1236000 1083300 1002000 TRUE FALSE FALSE 970728.0007 1135016.363 1399018.209 352816.0589 1210668.186 1009877.953 868256.1519 954589.7817 1177201.316 751092.6781 1.292421067 1.511153544 1.862643918 0.46973705 1.611875899 1.344545064 1.155990702 1.270934746 1.567318322 1 19.51863141 -11.26073711 1.807605337 0.000125025 1.337845399 0.079290433 0.350209795 3389464.677 511313.157 13799901.51 0.09100008 5.49E-12 11.26073711 1.337720375 LSGEHS(ph)ESS(ph)TPRPR ddPTM_HeLa_A485_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 2 0 LS(0.018)GEHS(0.877)ES(0.078)S(0.594)T(0.433)PRPR 77.468 0.0070008 1597200000 749610 972670 866980 686870 1201000 788540 1071500 966120 883810 1067800 TRUE FALSE FALSE 916358.1584 1086415.295 1187711.98 724391.9689 1081424.223 829826.7351 842565.2716 729177.5552 1061182.56 801617.1114 1.143136973 1.355279572 1.481644994 0.903663306 1.349053317 1.035190895 1.051081944 0.909633221 1.323802281 1 19.61255378 -5.257114667 24.99601242 1.085926429 1.329546411 0.326243864 0.161194326 434.7308063 2512651.939 0.042905163 0.071079029 5.53E-06 5.257114667 0.243619982 LSGEHS(ph)ESS(ph)TPRPR ddPTM_HeLa_A486_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 2 0 LS(0.01)GEHS(0.986)ES(0.024)S(0.49)T(0.49)PRPR 88.781 0.0016405 1659200000 1097600 1237100 1003900 168400 1400900 1098000 1207800 1237100 1134100 967070 TRUE FALSE FALSE 1020663.908 1139067.691 1392636.965 392043.7105 1225186.059 962539.9236 905595.6652 955439.3357 1232404.701 724909.3774 1.407988281 1.571324259 1.921118706 0.540817546 1.690123065 1.327807245 1.249253622 1.318012107 1.700081058 1 19.46744113 -11.19129552 2.047464381 4.81E-05 1.405824544 0.109733213 0.353112585 6086342.244 1102075.463 28210261.39 0.087253726 6.44E-12 11.19129552 1.405776447 LSGEHS(ph)ESSTPRPR ddPTM_HeLa_A485_30min_R1 5 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(0.574)ES(0.425)S(0.001)TPRPR;LS(0.003)GEHS(0.947)ES(0.043)S(0.003)T(0.003)PRPR;LSGEHS(0.961)ES(0.038)S(0.001)TPRPR;LSGEHS(0.932)ES(0.065)S(0.003)TPRPR;LS(0.031)GEHS(0.965)ES(0.003)S(0.001)T(0.001)PRPR ;;;; 138.98 2.17E-06 6244832000 725712 1091016 1071751 511427 1275779 928251 1096099 1176587 944176 900289 TRUE FALSE FALSE 887144.1307 1218600.831 1468236.294 539364.962 1148757.963 976852.787 861908.4943 888027.1934 1133663.463 675863.5209 1.312608394 1.803027968 2.172385768 0.79803828 1.699689253 1.445340304 1.275270033 1.313914964 1.677355602 1 19.36637242 -11.89928578 0.09596042 5.50E-12 1.913083201 0.155161799 0.350726391 213.1853723 2.251664831 54.36137194 7.999376646 1.26E-12 11.89928578 1.9130832 LSGEHS(ph)ESSTPRPR ddPTM_HeLa_A486_30min_R1 4 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(0.812)ES(0.092)S(0.092)T(0.003)PRPR;LSGEHS(0.978)ES(0.005)S(0.008)T(0.008)PRPR;LSGEHS(0.972)ES(0.022)S(0.005)T(0.001)PRPR;LSGEHS(0.891)ES(0.106)S(0.003)TPRPR ;;; 138.87 2.27E-06 4302590000 696553 551649 479631 163460.9 562346 842023 594269 601772 794370 955574 TRUE FALSE FALSE 647728.2317 507934.3242 665356.9682 380545.2361 491811.321 738142.7633 445576.6107 464761.6522 863226.6312 716292.0507 0.90427952 0.709116238 0.928890622 0.531271059 0.686607258 1.030505312 0.622059969 0.648843795 1.205132223 1 19.45018841 -7.761944231 24.99996222 1.102566189 0.75643905 0.447217047 0.153362142 11.93153778 590565.2096 0.120182489 0.03824433 1.73E-08 7.761944231 -0.346127139 LSGEHSES(ph)STPRPR ddPTM_HeLa_A485_30min_R1 2 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(0.009)ES(0.706)S(0.216)T(0.069)PRPR;LSGEHS(0.401)ES(0.591)S(0.008)TPRPR ; 161.08 7.20E-08 0 264100 428260 473190 214282 531000 336230 361520 426470 338120 310210 TRUE FALSE FALSE 322848.1339 478341.2816 648242.6721 225987.6831 478131.7755 353834.4829 284278.2987 321877.5638 405977.5826 232880.356 1.386326178 2.054021601 2.783586745 0.970402515 2.053121971 1.519383124 1.220705359 1.382158501 1.743288226 1 17.82922942 -5.98862685 1.025641327 1.366194506 1.968992283 0.19503932 0.477410751 0.876483944 1.980646519 0.237895661 0.284603287 1.03E-06 5.98862685 0.602797778 LSGEHSES(ph)STPRPR ddPTM_HeLa_A486_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(0.108)ES(0.88)S(0.006)T(0.006)PRPR 101.04 0.00030321 2422200000 149370 169390 162570 18871 216830 128950 141600 162320 137790 86817 TRUE FALSE FALSE 138899.9343 155966.9195 225521.4578 43932.64169 189633.1595 113041.4601 106170.1823 125363.2794 149733.7481 65077.45812 2.134378606 2.396635087 3.465431262 0.675082324 2.913960764 1.737029431 1.631443289 1.926370252 2.300854282 1 15.98987028 -9.620662734 0.130606957 1.46E-11 2.857803611 0.203815845 0.703227412 47.24778736 1.497418493 26.63798312 7.741771296 2.40E-10 9.620662734 2.857803611 LSGEHSESS(ph)TPRPR ddPTM_HeLa_A485_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(0.004)ES(0.103)S(0.447)T(0.447)PRPR 92.38 0.00073528 270060000 173170 257550 265130 119110 302940 209270 228790 240970 187310 204750 TRUE FALSE FALSE 211691.0691 287668.2321 363212.62 125616.6777 272778.2299 220227.0536 179907.1475 181871.7297 224901.3989 153709.5931 1.377214426 1.87150474 2.362979516 0.817233818 1.774633738 1.432747619 1.170435389 1.183216519 1.463157857 1 17.22984768 -5.262304883 24.99999958 1.29522118 1.870660058 0.409629535 0.332650677 80.48982106 2324972.33 0.091569822 0.145318242 5.47E-06 5.262304883 0.575438878 LSGEHSESS(ph)TPRPR ddPTM_HeLa_A486_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHSES(0.036)S(0.482)T(0.482)PRPR 107.5 0.0001949 236100000 163610 170540 191460 7753.6 235400 128280 139290 144770 174710 108310 TRUE FALSE FALSE 152141.7839 157025.7893 265598.4395 18050.77265 205873.937 112454.1179 104438.1687 111809.0313 189854.0035 81188.47102 1.873933355 1.934089746 3.271381221 0.222331723 2.535753345 1.385099589 1.286366986 1.377154045 2.338435508 1 16.30898725 -5.246832733 24.99977018 1.500824823 2.317230084 0.256124897 0.706146726 1225.20048 2096968.971 0.183676426 0.316354109 5.66E-06 5.246832733 0.816405261 LSGEHSESST(ph)PRPR ddPTM_HeLa_A486_30min_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(0.002)ES(0.141)S(0.235)T(0.622)PRPR 101.01 0.00070132 482610000 212320 218920 214550 14176 271450 181390 187890 196990 212740 139100 TRUE FALSE FALSE 197437.4644 201571.9819 297629.5058 33002.44442 237402.2098 159011.946 140877.9347 152139.6773 231180.4745 104268.4546 1.89354935 1.93320197 2.854453986 0.31651418 2.276836371 1.525024483 1.351107919 1.459115107 2.21716602 1 16.66994323 -5.2268191 24.99996757 1.502056512 2.197681486 0.269190306 0.582081753 905.787537 654085.5093 0.151094322 0.261688589 5.93E-06 5.2268191 0.695624973 LSGEMPPAS(ph)PSFPR ddPTM_HeLa_A485_30min_R1 1 LSGEMPPASPSFPR 14 0 Q96JM7-2;Q96JM7 Q96JM7-2 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 1 0 LS(0.002)GEMPPAS(0.965)PS(0.034)FPR 72.891 0.0088923 45561000 43864 51583 59081 36168 71987 58296 59399 63358 56843 64974 TRUE FALSE FALSE 53621.39547 57615.18314 80937.52047 38143.76626 64819.72152 61348.28842 46707.9184 47819.35116 68250.86871 48777.17756 1.099313207 1.18119141 1.659331772 0.782000275 1.32889447 1.257725262 0.957577309 0.980363226 1.399237761 1 15.57391866 -6.003285662 0.928224731 1.102595011 1.243742303 0.039745814 0.238082461 2.084235663 3.913858868 0.128565174 0.155386154 9.92E-07 6.003285662 0.141147291 LSGEMPPAS(ph)PSFPR ddPTM_HeLa_A486_30min_R1 3 LSGEMPPASPSFPR 14 0 Q96JM7-2;Q96JM7 Q96JM7-2 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 1 0 LSGEMPPAS(0.952)PS(0.048)FPR;LSGEMPPAS(0.976)PS(0.024)FPR;LSGEMPPAS(0.972)PS(0.028)FPR ;; 146.48 7.96E-08 293670000 352209 365851 311050 121803 399700 325116 384051 387619 304895 363314 TRUE FALSE FALSE 327520.9679 336859.6344 431496.8902 283563.5396 349565.8989 285006.4935 287957.3777 299366.6154 331323.5441 272337.8096 1.202627606 1.236918351 1.584417863 1.041219873 1.283574614 1.04651827 1.057353653 1.099247349 1.216590324 1 18.05503777 -5.303161218 24.99971175 1.113341905 1.33088148 0.426424101 0.124517088 476.7262066 285653.1079 0.034736535 0.051523169 4.98E-06 5.303161218 0.217539575 LSGFS(ph)FK ddPTM_HeLa_A485_30min_R1 5 LSGFSFK 7 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LSGFS(1)FK;LSGFS(1)FK;LSGFS(1)FK;LSGFS(1)FK;LSGFS(1)FK ;;;; 163.91 0.00013622 28961710000 6450610 3901000 3229740 7394780 4818000 3132200 6397370 5153860 4210270 8859440 TRUE FALSE FALSE 7885525.94 4357188.016 4424555.227 7798738.107 4338303.003 3296197.149 5030519.638 3889867.754 5055232.57 6650944.654 1.185624953 0.655123181 0.665252149 1.172576004 0.652283732 0.495598343 0.756361675 0.584859438 0.760077377 1 22.66512783 -4.254967448 24.42163087 0.736041467 1.185625236 0.320390355 0.18986056 653.0671595 2464235.749 0.047684089 0.437143638 5.56E-05 4.254967448 0.449583768 LSGFS(ph)FK ddPTM_HeLa_A486_30min_R1 9 LSGFSFK 7 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LSGFS(1)FK;LSGFS(1)FK;LS(0.131)GFS(0.869)FK;LS(0.005)GFS(0.995)FK;LS(0.001)GFS(0.999)FK;LSGFS(1)FK;LSGFS(1)FK;LSGFS(1)FK;LSGFS(1)FK ;;;;;;;; 172.94 0.00058981 40425746000 6113182 6125382 2481409 2545658 3308879 6135192 7217362 7095603 3740201 5655348 TRUE FALSE FALSE 5684679.51 5639984.422 3442277.019 5926420.474 2893848.542 5378294.389 5411501.69 5480089.093 4064404.634 4239212.051 1.340975503 1.330432249 0.812008689 1.398000478 0.682638308 1.26870143 1.276534796 1.292714077 0.958764173 1 22.0153647 -1.000005978 0.015801055 0.002942664 2.524367464 0.052383439 0.232572017 22086.9554 26.99775896 1701.818788 2715.605761 0.099998623 1.000005978 2.5214248 LSGFS(ph)FKK ddPTM_HeLa_A485_30min_R1 2 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LSGFS(1)FKK;LS(0.001)GFS(0.999)FKK ; 90.827 0.010218 27007410000 795140 506040 358570 892070 785970 594580 1060160 1149570 640170 1266970 TRUE FALSE FALSE 972016.1498 565216.976 491219.9643 940801.5253 707716.0671 625711.2894 833648.1553 867636.155 768646.247 951137.6959 1.021951032 0.594253575 0.516455153 0.989132835 0.744073198 0.657855631 0.87647473 0.912208778 0.808133512 1 19.85929469 -7.731667982 0.564718759 0.993148987 0.739393278 0.165188764 0.155096479 1.407460605 1.091045067 0.162330679 0.081072806 1.85E-08 7.731667982 -0.253755709 LSGFS(ph)FKK ddPTM_HeLa_A486_30min_R1 5 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LSGFS(1)FKK;LSGFS(1)FKK;LS(0.06)GFS(0.94)FKK;LSGFS(1)FKK;LSGFS(1)FKK ;;;; 113.22 0.0007986 1.83E+11 31175883 28628006 10439794 16970994 22186337 39610927 45239400 50371020 19780060 39310198 TRUE FALSE FALSE 28990614.59 26359418.54 14482361.82 39509331.7 19403519.73 34724133.56 33920023.63 38902638.34 21494611.53 29466668.55 0.983844324 0.894550346 0.491482836 1.340814338 0.658490447 1.178420747 1.15113195 1.320225198 0.729455096 1 24.81258063 -6.288380035 24.93796595 1.100566014 0.879688525 0.135922669 0.250608038 1373.936119 1271796.923 0.085122259 0.075089465 5.15E-07 6.288380035 -0.220877489 LSGFSFKK ddPTM_HeLa_A485_30min_R1 2 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 0 0 ; ; 96.331 0.0011054 0 1157760 817640 485690 1416220 1307970 1027290 1954670 2017700 1020440 2107960 FALSE FALSE TRUE 1415299.718 913255.8855 665366.9422 1493584.513 1177743.914 1081077.316 1537038.786 1522855.911 1225232.948 1582484.366 0.894353049 0.577102627 0.420457198 0.943822602 0.744237314 0.683151972 0.97128213 0.96231972 0.774246479 1 20.59375982 -6.378421721 0.825765176 0.932593845 0.662369326 0.279220432 0.155703128 0.826048445 1.200023357 0.110753533 0.093157654 4.18E-07 6.378421721 -0.270224519 LSGFSFKK ddPTM_HeLa_A486_30min_R1 2 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 0 0 ; ; 106.68 0.0033423 1261930000 769540 891530 278020 507690 743970 1374390 1734520 1934290 713970 1353450 FALSE FALSE TRUE 715599.2199 820881.9159 385676.7896 1181927.977 650654.3454 1204831.736 1300524.75 1493894.392 775857.4945 1014537.311 0.705345395 0.809119495 0.380150425 1.164992125 0.641331116 1.187567695 1.281889524 1.472488372 0.764740228 1 19.95239049 -6.269756002 24.20236663 1.17965225 0.747615427 0.38638619 0.250358694 397.9272059 1158011.73 0.085028667 0.076285154 5.37E-07 6.269756002 -0.432036823 LSGGGDWHIAYVLLYGPR ddPTM_HeLa_A485_30min_R1 1 LSGGGDWHIAYVLLYGPR 18 0 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 0 0 148.33 6.33E-10 19516000 12424 17874 18043 8940 22108 13229 17975 19752 10789 15645 FALSE FALSE TRUE 15187.67594 19964.20882 24717.85653 9428.369563 19906.84989 13921.64998 14134.49441 14907.79103 12954.25334 11744.98942 1.293119592 1.699806453 2.10454481 0.802756752 1.69492276 1.185326736 1.203448883 1.269289438 1.102959983 1 13.51975779 -6.074975325 0.599735992 1.091801365 1.648699342 0.255068463 0.317115597 1.264759144 0.996253552 0.246009226 0.336555714 8.41E-07 6.074975325 0.556897976 LSGGGHYNSFS(ph)PDLALDSPGTDHFVIIAQLK ddPTM_HeLa_A485_30min_R1 1 LSGGGHYNSFSPDLALDSPGTDHFVIIAQLK 31 0 Q8TAV0-5;Q8TAV0-2;Q8TAV0-4;B1AJQ5 Q8TAV0-5 FAM76A Protein FAM76A 1 0 LSGGGHYNS(0.007)FS(0.993)PDLALDSPGTDHFVIIAQLK 187.09 3.50E-21 51927000 17592 17103 18763 12508 20102 16035 22620 21525 16151 25097 TRUE FALSE FALSE 21505.27971 19103.04707 25704.21449 13191.28037 18100.5743 16874.56781 17787.05221 16245.96 19392.35755 18840.77978 1.141421956 1.013920193 1.364286128 0.700145139 0.960712588 0.895640627 0.944071977 0.862276413 1.02927574 1 14.20157106 -5.261044542 24.99982159 0.909961215 1.157280492 0.508906623 0.116721443 28.96579623 1833971.517 0.030742678 0.049287914 5.48E-06 5.261044542 0.247319278 LSGGHS(ph)LHETSTVLVETVTK ddPTM_HeLa_A486_30min_R1 1 LSGGHSLHETSTVLVETVTK 20 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LS(0.191)GGHS(0.235)LHET(0.191)S(0.191)T(0.191)VLVETVTK 121.63 2.36E-06 362820000 512730 586970 391330 18148 537280 454880 569090 532860 558570 209420 TRUE FALSE FALSE 476790.2747 540456.3595 542863.4562 42249.46115 469889.3325 398761.5305 426697.6628 411539.4103 606987.2973 156979.8689 3.03727018 3.442838647 3.458172439 0.269139358 2.993309497 2.540208074 2.718168041 2.621606281 3.866656926 1 17.26022003 -6.781725857 21.81621557 2.686741487 2.60846689 0 1.07097115 1377.840683 1481682.158 0.453237994 0.306316619 1.65E-07 6.781725857 -0.078274597 LSGINEIPRPFS(ph)PPVT(ph)SNTSPPPAAPLAR ddPTM_HeLa_A485_30min_R1 2 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 2 0 LSGINEIPRPFS(0.998)PPVT(0.436)S(0.082)NT(0.255)S(0.229)PPPAAPLAR;LS(0.003)GINEIPRPFS(0.997)PPVT(0.428)S(0.084)NT(0.257)S(0.232)PPPAAPLAR ; 80.112 0.0028022 488590000 88869 116741 121706 103450 129765 125324 138513 154184 105188 139748 TRUE FALSE FALSE 108637.6025 130392.8444 166730.114 109101.2116 116845.141 131885.7709 108918.566 116370.1322 126298.2668 104911.3955 1.035517657 1.242885426 1.589246938 1.039936711 1.113750708 1.257115781 1.03819576 1.109222995 1.203856513 1 16.67881187 LSGINEIPRPFS(ph)PPVT(ph)SNTSPPPAAPLAR ddPTM_HeLa_A486_30min_R1 1 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 2 0 LS(0.001)GINEIPRPFS(0.992)PPVT(0.296)S(0.279)NT(0.222)S(0.21)PPPAAPLAR 59.694 0.016228 303560000 77443 89847 81569 39991 112690 75707 100800 106510 75698 96148 TRUE FALSE FALSE 72014.64562 82727.1965 113154.7013 93101.06903 98555.36941 66367.04007 75578.77385 82259.9981 82259.56359 72071.91498 0.999205386 1.147842353 1.570024903 1.291780148 1.367458731 0.920844688 1.048657773 1.141359961 1.141353933 1 16.13714956 -6.252587211 24.95161082 1.059166673 1.285476778 0.358105884 0.149959184 778.7129101 2194958.768 0.053186919 0.052441769 5.59E-07 6.252587211 0.226310105 LSGINEIPRPFS(ph)PPVTSNTSPPPAAPLAR ddPTM_HeLa_A485_30min_R1 2 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 LSGINEIPRPFS(0.603)PPVT(0.028)S(0.028)NT(0.243)S(0.098)PPPAAPLAR;LSGINEIPRPFS(0.94)PPVT(0.026)S(0.026)NT(0.006)SPPPAAPLAR ; 166.24 2.37E-14 2435000000 198771 247825 224079 205859 257010 258420 300520 330720 228026 283400 TRUE FALSE FALSE 242986.9232 276805.978 306975.1468 217104.5559 231421.182 271950.4716 236311.447 249610.4015 273788.7266 212753.5956 1.142104896 1.301063689 1.442867022 1.020450702 1.087742754 1.278241483 1.110728335 1.173237053 1.286881784 1 17.69882399 -14 0.193161659 0.150796557 1.238072099 0.197458428 0.119282493 241.8733625 2.375077898 79.76506117 0.327173515 1.00E-14 14 1.087275542 LSGINEIPRPFSPPVTSNT(ph)SPPPAAPLAR ddPTM_HeLa_A486_30min_R1 2 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 LSGINEIPRPFS(0.092)PPVT(0.038)S(0.133)NT(0.7)S(0.038)PPPAAPLAR;LSGINEIPRPFS(0.156)PPVT(0.156)S(0.196)NT(0.246)S(0.246)PPPAAPLAR ; 140.78 2.71E-07 2414500000 301116 354086 286410 118661 386180 308352 370200 383140 318528 334120 TRUE FALSE FALSE 280009.3234 326026.9358 397315.6223 276248.8048 337741.7034 270310.6653 277572.0444 295907.3859 346138.2635 250454.1772 1.118006202 1.301742855 1.586380498 1.102991405 1.348516951 1.07928192 1.108274765 1.181483133 1.382042285 1 17.93418715 -5.874272889 1.755210989 1.165813308 1.3145201 0.131955607 0.158645783 0.733916526 4.651717755 0.058450171 0.070973859 1.34E-06 5.874272889 0.148706792 LSGLS(ph)FK ddPTM_HeLa_A485_30min_R1 2 LSGLSFK 7 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 LSGLS(1)FK;LSGLS(1)FK ; 142.43 0.0014355 4233400000 10927800 6801300 5410700 12841800 6339100 5395200 8409400 7256700 5367700 14231000 TRUE FALSE FALSE 13358651.41 7596652.872 7412343.088 13543315.02 5707956.946 5677684.329 6612662.992 5476982.947 6444948.155 10683473.6 1.250403371 0.711065816 0.693813956 1.267688349 0.534279127 0.531445534 0.618961888 0.512659379 0.603263357 1 23.34887746 -5.796307165 24.99994166 0.603244579 0.940985841 0.360694063 0.221858112 196.2300597 140694.4665 0.066752926 0.075693851 1.60E-06 5.796307165 0.337741262 LSGLS(ph)FK ddPTM_HeLa_A486_30min_R1 3 LSGLSFK 7 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 LSGLS(1)FK;LSGLS(1)FK;LS(0.001)GLS(0.999)FK ;; 148.69 0.0010229 4808476000 10247015 10239050 3572512 4415205 4888163 9308769 10113990 10134728 6804311 11477710 TRUE FALSE FALSE 9528752.164 9427670.388 4955884.322 10278820.37 4275044.016 8160347.725 7583362.727 7827271.674 7394114.156 8603616.709 1.107528669 1.095779915 0.576023374 1.194709239 0.496889176 0.948478762 0.881415686 0.90976527 0.859419289 1 23.03651182 -4.580160395 24.99991888 0.856771725 1.104599804 0.210750376 0.188385933 97.70142124 42640.04306 0.044026892 0.116484247 2.63E-05 4.580160395 0.247828079 LSGLS(ph)FKR ddPTM_HeLa_A485_30min_R1 3 LSGLSFKR 8 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 LSGLS(1)FKR;LSGLS(1)FKR;LSGLS(1)FKR ;; 143.5 0.00021635 18464770000 6416280 4903420 4661920 6092130 6069270 5007190 7215650 8417730 4484760 8013080 TRUE FALSE FALSE 7843559.35 5476832.315 6386558.207 6424927.636 5464992.168 5269358.726 5673967.431 6353268.519 5384810.195 6015566.626 1.303877064 0.910443297 1.061671926 1.068050283 0.908475046 0.875953847 0.943214128 1.056138002 0.895145966 1 22.52026921 -4.25502308 24.88512344 0.970961896 1.303877223 0.673972772 0.069902993 432.3468285 1676776.321 0.018129607 0.166809115 5.56E-05 4.25502308 0.332915328 LSGLS(ph)FKR ddPTM_HeLa_A486_30min_R1 4 LSGLSFKR 8 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 LS(0.001)GLS(0.999)FKR;LSGLS(1)FKR;LSGLS(1)FKR;LS(0.001)GLS(0.999)FKR ;;; 121.9 0.00040438 46820910000 20481290 21070380 10641900 9443000 14901600 19136950 23417340 25870060 13134050 19575210 TRUE FALSE FALSE 19045657.34 19400686.35 14762728.68 21983781.22 13032502.38 16776027.68 17558073.85 19980012.08 14272520.03 14673450 1.297967236 1.322162569 1.006084369 1.498201256 0.888168929 1.143291297 1.196587977 1.36164379 0.972676503 1 23.80670478 -1.000047276 0.022338713 8.84E-07 2.727791371 0.145541159 0.175267105 5421.714766 9.345723404 408.5861288 790.5536488 0.099989115 1.000047276 2.727790487 LSGPS(ph)LK ddPTM_HeLa_A485_30min_R1 2 LSGPSLK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LSGPS(1)LK;LSGPS(1)LK ; 108.57 0.0031572 274570000 821580 584360 424150 816950 717420 462010 1139350 1000120 956020 1797110 TRUE FALSE FALSE 1004337.637 652695.8187 581060.7354 861577.9099 645991.1458 486200.1292 895918.5649 754839.0019 1147884.445 1349123.55 0.74443711 0.483792473 0.430694976 0.638620466 0.478822822 0.360382212 0.664074513 0.559503243 0.850837156 1 20.36359104 -7.870373608 2.007407266 1.004323288 0.530442674 0.667501594 0.10953303 0.174408112 1.477229903 0.10272672 0.029215648 1.35E-08 7.870373608 -0.473880614 LSGPS(ph)LK ddPTM_HeLa_A486_30min_R1 2 LSGPSLK 7 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LSGPS(1)LK;LSGPS(1)LK ; 115.7 0.0024804 485700000 1339380 1282140 514170 743490 803940 1756160 2176070 2721100 1022190 1805620 TRUE FALSE FALSE 1245496.379 1180538.557 713270.394 1730882.294 703102.3488 1539502.835 1631594.27 2101564.931 1110794.252 1353480.999 0.920217114 0.87222396 0.526989588 1.278837527 0.519477074 1.137439562 1.205479996 1.55271107 0.820694382 1 20.3682432 -6.488506257 22.61837349 1.188020587 0.834409928 0.260228949 0.26525137 240.7002074 158389.6422 0.0887632 0.078212762 3.25E-07 6.488506257 -0.353610659 LSHS(ph)DEKPYQCPVCQQR ddPTM_HeLa_A485_30min_R1 2 LSHSDEKPYQCPVCQQR 17 1 I3L2Z5;A0A087WWR2;P56270-3;P56270;P56270-2 I3L2Z5 MAZ Myc-associated zinc finger protein 1 0 LS(0.02)HS(0.98)DEKPYQCPVCQQR;LS(0.226)HS(0.774)DEKPYQCPVCQQR ; 99.569 0.00027243 359440000 323620 212480 154878 521150 409890 336790 599740 594210 285410 675560 TRUE FALSE FALSE 395608.1525 237327.6877 212173.8172 549619.1049 369079.9124 354423.8036 471600.6496 448479.0658 342689.1691 507155.3248 0.780053237 0.467958584 0.418360622 1.083729339 0.727745317 0.698846658 0.929893913 0.884303179 0.67570851 1 18.95206814 -5.247615614 24.95058277 0.843394583 0.546707591 0.450849164 0.151971637 718.2932847 1296448.994 0.040718953 0.070052714 5.65E-06 5.247615614 -0.296686992 LSHS(ph)DEKPYQCPVCQQR ddPTM_HeLa_A486_30min_R1 2 LSHSDEKPYQCPVCQQR 17 1 I3L2Z5;A0A087WWR2;P56270-3;P56270;P56270-2 I3L2Z5 MAZ Myc-associated zinc finger protein 1 0 LS(0.012)HS(0.988)DEKPYQCPVCQQR;LS(0.051)HS(0.949)DEKPYQCPVCQQR ; 175.77 7.67E-13 442670000 195232 293200 185860 120554 298850 319760 392760 377820 244950 305720 TRUE FALSE FALSE 181547.245 269965.7642 257829.9695 280655.8045 261365.4463 280311.2623 294487.2938 291798.6338 266182.4632 229165.7221 0.792209425 1.178037281 1.125080868 1.224684922 1.140508467 1.223181459 1.285040761 1.273308377 1.161528263 1 17.80603174 -4.256620954 4.78188471 1.19222407 0.768305434 0.681404367 0.078939047 0.102246992 6.653194502 0.019278452 0.145052658 5.54E-05 4.256620954 -0.423918636 LSIFDANES(ph)GFESYEALPQHK ddPTM_HeLa_A485_30min_R1 2 LSIFDANESGFESYEALPQHK 21 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 LSIFDANES(1)GFESYEALPQHK;LSIFDANES(1)GFESYEALPQHK ; 222.72 9.41E-36 174804000 338260 273320 212620 290660 424040 297540 423300 433700 240320 400800 TRUE FALSE FALSE 413504.77 305282.3964 291276.9859 306538.0198 381821.0887 313118.7343 332858.497 327334.395 288550.0197 300887.9362 1.374281652 1.014604973 0.96805804 1.018778033 1.268981048 1.040649015 1.106254047 1.087894713 0.958994978 1 18.19886674 LSIFDANES(ph)GFESYEALPQHK ddPTM_HeLa_A486_30min_R1 2 LSIFDANESGFESYEALPQHK 21 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 LSIFDANES(1)GFESYEALPQHK;LSIFDANES(1)GFESYEALPQHK ; 257.01 6.00E-59 172329000 364950 429620 317780 176963 456400 459140 551680 529050 341200 421820 TRUE FALSE FALSE 339368.8896 395575.3466 440832.9264 411978.8072 399154.0562 402495.975 413643.8289 408596.8641 370775.4907 316193.5264 1.073294869 1.251054539 1.394187071 1.302932454 1.262372639 1.272941858 1.308198285 1.292236652 1.172622017 1 18.27044831 -8.067000714 3.056339856 1.000312138 1.275156504 0.54004445 0.076206255 0.242179918 5.429918965 0.075450754 0.020136794 8.57E-09 8.067000714 0.274844365 LSILSLLGHVIR ddPTM_HeLa_A485_30min_R1 2 LSILSLLGHVIR 12 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;A0A2R8Y7E9;Q59IT9;A0A2R8Y6W1;Q86WV8;A0A2R8Y5J1;A0A2R8Y5F8;A0A2R8YGL0;A0A2R8Y6N1;A0A2R8Y5Q4;A0A2R8Y6S8 Q92574 TSC1 Hamartin 0 0 ; ; 151.98 4.46E-05 13114500 14444.6 22038.8 24134 7680.7 25051 11539.6 21431 19703.6 13908.6 18966.5 FALSE FALSE TRUE 17657.75144 24616.04595 33062.1709 8100.277192 22556.83448 12143.79561 16852.09177 14871.26121 16699.92844 14238.5006 1.240141215 1.72883695 2.322026161 0.568899593 1.584214175 0.85288444 1.183558034 1.044440115 1.172871281 1 13.79750961 -5.264103802 24.99999812 1.078570832 1.760184978 0.46889047 0.343616303 205.7485758 1930523.445 0.092450236 0.144479815 5.44E-06 5.264103802 0.681614146 LSILSLLGHVIR ddPTM_HeLa_A486_30min_R1 2 LSILSLLGHVIR 12 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;A0A2R8Y7E9;Q59IT9;A0A2R8Y6W1;Q86WV8;A0A2R8Y5J1;A0A2R8Y5F8;A0A2R8YGL0;A0A2R8Y6N1;A0A2R8Y5Q4;A0A2R8Y6S8 Q92574 TSC1 Hamartin 0 0 ; ; 140.24 0.0001542 7373600 8114.9 6548.9 4996.6 1677.03 7342.9 6111.5 6426.5 6866.7 5994 6449.1 FALSE FALSE TRUE 7546.087415 6029.941313 6931.417334 3904.210592 6421.885012 5357.525267 4818.521727 5303.302309 6513.564746 4834.203383 1.560978473 1.247349529 1.433828241 0.807622328 1.328426734 1.108254006 0.996756103 1.097037482 1.347391541 1 12.23906246 -4.350031892 1.067474209 1.113614984 1.702350145 0.379788671 0.172397173 1.644207001 1.716403004 0.0537853 1.063676093 4.47E-05 4.350031892 0.588735162 LSILTYVSQYYNYFHGR ddPTM_HeLa_A485_30min_R1 1 LSILTYVSQYYNYFHGR 17 0 Q8IY33;Q8IY33-4;Q8IY33-2 Q8IY33 MICALL2 MICAL-like protein 2 0 0 154.6 1.21E-09 3613800 2482.5 2580.4 3139.2 1459.1 3342.7 2347 3124.1 3569.7 2165.1 2905.4 FALSE FALSE TRUE 3034.72356 2882.155334 4300.520713 1538.806938 3009.889051 2469.885291 2456.610513 2694.225478 2599.615711 2181.13725 1.391349197 1.321400262 1.971687345 0.705506698 1.37996316 1.132384168 1.126297996 1.235238854 1.191862507 1 11.09086484 -5.262032246 24.99996893 1.132818525 1.537471042 0.442615935 0.230633395 52.84503502 2228404.632 0.061723824 0.098193841 5.47E-06 5.262032246 0.404652516 LSILYPATTGR ddPTM_HeLa_A485_30min_R1 2 LSILYPATTGR 11 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 182.16 8.03E-09 50626000 41982 47426 58012 46842 69348 46022 54851 57840 50727 69213 FALSE FALSE TRUE 51320.75106 52972.05815 79473.05288 49400.85985 62443.46962 48431.64076 43131.63576 43654.64931 60907.4436 51959.47287 0.987707308 1.019487982 1.529519999 0.950757525 1.201772577 0.932104159 0.830101488 0.840167286 1.172210576 1 15.66509917 -6.271384214 23.54422727 0.937126177 1.14263898 0.209505068 0.175858046 473.070277 1119980.949 0.061710778 0.055147857 5.35E-07 6.271384214 0.205512803 LSILYPATTGR ddPTM_HeLa_A486_30min_R1 2 LSILYPATTGR 11 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 180.09 9.52E-09 55888000 61153 68737 66836 22424.2 90392 66577 71593 78163 65144 70349 FALSE FALSE TRUE 56866.49049 63290.02978 92716.68913 52204.67086 79054.19249 58363.40665 53679.67417 60366.99119 70790.73437 52733.1525 1.078382152 1.200194314 1.758223901 0.98997819 1.499136477 1.106768776 1.017949271 1.144763556 1.342433194 1 15.68642263 -6.327112624 24.98986581 1.124903347 1.307009041 0.148225825 0.219038497 402.0585488 152989.0477 0.075987375 0.06701457 4.71E-07 6.327112624 0.182105695 LSIVPVRR ddPTM_HeLa_A485_30min_R1 1 LSIVPVRR 8 1 H0YEN5;P15880;E9PPT0;E9PMM9;I3L404;E9PM36 H0YEN5 RPS2 40S ribosomal protein S2 0 0 88.819 0.020282 17563000 14801 19777 21100 14699 24733 20346 22515 26087 18845 22942 FALSE FALSE TRUE 18093.43139 22089.74811 28905.76804 15501.96915 22270.49568 21411.2851 17704.48632 19689.12235 22627.01864 17222.98162 1.050540016 1.282573982 1.678325431 0.90007465 1.293068539 1.243181092 1.027957105 1.143188954 1.31376896 1 14.0720473 -5.282726246 24.98170859 1.144629764 1.331689366 0.197052311 0.188761225 1382.210976 1622123.898 0.053063587 0.078794129 5.22E-06 5.282726246 0.187059602 LSKEDIER ddPTM_HeLa_A485_30min_R1 3 LSKEDIER 8 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 97.565 0.0034128 724381000 1398670 1756280 1329650 1450180 2318180 2054310 2620410 3290310 1594140 1957110 FALSE FALSE TRUE 1709799.316 1961661.668 1821542.866 1529399.661 2087373.86 2161870.495 2060537.997 2483356.313 1914069.276 1469238.495 1.163731635 1.335155371 1.239787055 1.040947175 1.420718193 1.471422443 1.402453042 1.690233629 1.302762814 1 20.48663717 -5.80049137 23.65642047 1.421344383 1.208129087 0.188749092 0.1771491 122.9309103 74466.52739 0.052594028 0.059637556 1.58E-06 5.80049137 -0.213215296 LSKEDIER ddPTM_HeLa_A486_30min_R1 2 LSKEDIER 8 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 91.584 0.0047338 422900000 1151770 1062170 747470 469450 1481290 1139090 1364040 1465260 837440 1349220 FALSE FALSE TRUE 1071036.871 977999.7808 1036910.402 1092903.325 1295492.796 998560.6572 1022742.765 1131652.284 910029.9735 1011366.53 1.058999719 0.967008252 1.02525679 1.08062042 1.280933032 0.98733805 1.01124838 1.118933889 0.899802343 1 19.94787451 -7.762666063 24.99992212 0.949901165 1.064780685 0.224189947 0.086569735 52.54949023 1070747.111 0.072853564 0.022826452 1.73E-08 7.762666063 0.114879519 LSKPPFQTNPS(ph)PEMVSKLDLTDAK ddPTM_HeLa_A485_30min_R1 2 LSKPPFQTNPSPEMVSKLDLTDAK 24 2 H0Y7Y8;Q4LE39-4;Q4LE39-3;Q4LE39-2;Q4LE39 H0Y7Y8 ARID4B AT-rich interactive domain-containing protein 4B 1 0 LS(0.001)KPPFQT(0.01)NPS(0.925)PEMVS(0.06)KLDLT(0.004)DAK;LSKPPFQT(0.002)NPS(0.998)PEMVSKLDLTDAK ; 158.83 1.15E-10 303330000 162808 208030 105145 165247 254224 341250 534410 825510 170661 264293 TRUE FALSE FALSE 199024.0779 232357.2989 144042.5109 174274.0252 228912.5659 359117.3223 420228.9378 623052.3782 204911.0973 198409.6191 1.003096921 1.171098962 0.725985522 0.878354719 1.153737238 1.809979395 2.117986717 3.140232722 1.032767959 1 17.59812244 -6.251445644 2.829166034 1.997880566 0.950054198 0.328497899 0.579656338 0.271987413 4.371179795 0.208663693 0.195043261 5.60E-07 6.251445644 -1.047826368 LSKPSQVSS(ph)GQK ddPTM_HeLa_A486_30min_R1 1 LSKPSQVSSGQK 12 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 LSKPS(0.001)QVS(0.116)S(0.882)GQK 46.892 0.014319 0 139390 142950 81997 75472 150460 160270 199650 173930 122200 235390 TRUE FALSE FALSE 129619.4808 131622.1214 113748.4344 175702.6301 131587.9038 140497.5169 149695.4583 134329.9359 132792.3944 176446.8119 0.734609367 0.745959193 0.644661318 0.995782402 0.745765267 0.796259878 0.84838857 0.761305543 0.752591634 1 17.42887384 LSKS(ph)DEQLSSLDR ddPTM_HeLa_A485_30min_R1 1 LSKSDEQLSSLDR 13 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 LS(0.37)KS(0.63)DEQLSSLDR 90.581 0.00076501 687640000 340690 363840 299310 436270 403010 309240 414850 367760 368290 627750 TRUE FALSE FALSE 416475.3151 406387.923 410037.2243 460102.3254 362884.9093 325431.3282 326213.9085 277566.2834 442202.4248 471263.4779 0.883741972 0.862336977 0.870080631 0.976316534 0.77002553 0.690550708 0.692211308 0.588983226 0.938333747 1 18.84617435 -5.887630798 7.274734155 0.748611276 0.893067044 0.166167997 0.118225788 0.313997292 18.89730796 0.035457898 0.040309508 1.30E-06 5.887630798 0.144455768 LSKS(ph)DEQLSSLDR ddPTM_HeLa_A486_30min_R1 1 LSKSDEQLSSLDR 13 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 LS(0.03)KS(0.97)DEQLSSLDR 83.253 0.0016839 681150000 183000 177020 105220 73724 161680 215070 222380 204970 160860 276660 TRUE FALSE FALSE 170172.645 162992.2905 145964.0019 171633.1978 141400.5868 188536.8501 166738.1719 158302.8055 174803.4743 207382.5352 0.820573655 0.785949937 0.703839413 0.827616451 0.681834594 0.909125977 0.804012603 0.763337208 0.842903546 1 17.66193488 -11.62817766 0.268618539 1.340131257 0.769104165 0.523535618 0.060870657 37.88687598 1.151024288 7.524498045 0.077763858 2.35E-12 11.62817766 -0.571027092 LSKS(ph)DEQLSSLDRDSGQCSR ddPTM_HeLa_A486_30min_R1 1 LSKSDEQLSSLDRDSGQCSR 20 2 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 LS(0.023)KS(0.977)DEQLSSLDRDSGQCSR 123.71 3.30E-07 191860000 103880 72313 69485 61046 139640 120110 164810 177170 90000 150780 TRUE FALSE FALSE 96598.54844 66582.65452 96391.45287 142118.1731 122125.0491 105292.0494 123572.7948 136832.2586 97801.27246 113023.7066 0.854675106 0.589103441 0.852842787 1.25741915 1.08052596 0.931592606 1.093335182 1.210650957 0.865316449 1 16.78626588 -5.027551828 7.775121565 1.067454317 0.72098533 0.556718581 0.125138435 0.142978742 35.03909896 0.032729847 0.059295991 9.39E-06 5.027551828 -0.346468987 LSLDLLSQMS(ph)PGDLAK ddPTM_HeLa_A485_30min_R1 2 LSLDLLSQMSPGDLAK 16 0 Q6UWE0-3;Q6UWE0-2;Q6UWE0 Q6UWE0-3 LRSAM1 E3 ubiquitin-protein ligase LRSAM1 1 0 LSLDLLS(0.054)QMS(0.946)PGDLAK;LSLDLLS(0.003)QMS(0.997)PGDLAK ; 85.636 0.0014118 61189000 72520 65287 55270 82506 93961 74259 102694 109127 70209 119475 TRUE FALSE FALSE 88651.82381 72921.74673 75716.67298 87013.09386 84605.91292 78147.08641 80752.58797 82363.43215 84299.3023 89692.08127 0.988401903 0.813023242 0.844184591 0.970131283 0.943293006 0.871281894 0.900331298 0.918291013 0.939874525 1 16.452693 -8.097366613 1.413800406 0.999740443 0.901379325 0.242830084 0.051089478 0.791318161 3.406874926 0.049875499 0.014857027 7.99E-09 8.097366613 -0.098361118 LSLEGDHS(ph)TPPSAYGSVK ddPTM_HeLa_A485_30min_R1 2 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LS(0.109)LEGDHS(0.735)T(0.154)PPS(0.003)AYGSVK;LSLEGDHS(0.5)T(0.5)PPSAYGSVK ; 201.57 3.26E-25 1289060000 1142270 1118740 768062 1079870 1311820 1341810 1701570 1910990 1210470 2008480 TRUE FALSE FALSE 1396364.021 1249566.911 1052200.096 1138860.564 1181210.595 1412065.097 1338015.669 1442316.706 1453400.226 1507802.899 0.926091879 0.828733591 0.697836631 0.755311297 0.783398543 0.936505095 0.88739428 0.956568466 0.963919241 1 20.52401642 -6.266515602 16.43793995 0.942321502 0.791999519 0.605575083 0.060550709 2.980191213 9647.617748 0.022403273 0.020565015 5.41E-07 6.266515602 -0.150321983 LSLEGDHST(ph)PPSAYGSVK ddPTM_HeLa_A485_30min_R1 2 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHS(0.026)T(0.973)PPSAYGSVK;LSLEGDHS(0.153)T(0.847)PPSAYGSVK ; 263.15 2.71E-57 4009500000 2572100 2634800 1854660 2643400 3018300 2750700 4025100 4623800 2958400 4706800 TRUE FALSE FALSE 3144254.771 2942916.94 2540775.913 2787802.249 2717787.454 2894722.399 3165104.503 3489805.8 3552123.744 3533481.382 0.889846141 0.832866123 0.719057394 0.788967578 0.769152901 0.81922673 0.895746761 0.987639504 1.005275919 1 21.75265888 -7.017261575 1.906606922 1.003664808 0.796185513 0.817828423 0.041285726 0.151153085 1.077941842 0.027266876 0.013771464 9.61E-08 7.017261575 -0.207479295 LSLEGDHST(ph)PPSAYGSVK ddPTM_HeLa_A486_30min_R1 2 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHS(0.008)T(0.992)PPSAYGSVK;LSLEGDHS(0.011)T(0.989)PPSAYGSVK ; 311.95 1.81E-88 13826200000 12037000 14471800 9931500 1982610 14653800 14565200 15697100 15442000 12427200 12768200 TRUE FALSE FALSE 11193268.46 13325001.86 13777242.77 4615616.276 12815783.76 12768293.71 11769519.55 11926193.7 13504399.7 9570959.613 1.169503259 1.392232587 1.439483953 0.482252194 1.339028089 1.334066199 1.229711547 1.24608129 1.410976563 1 23.19023215 LSLEGDHSTPPSAY(ph)GSVK ddPTM_HeLa_A485_30min_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHSTPPS(0.003)AY(0.952)GS(0.045)VK 138.66 3.46E-05 286120000 194510 222400 156280 159700 285740 232300 320920 371700 236180 338560 TRUE FALSE FALSE 237778.0784 248407.7454 214094.4754 168424.0066 257290.7223 244462.8688 252352.8203 280539.9922 283579.1596 254163.2227 0.935532985 0.977355192 0.842350333 0.662660808 1.012305083 0.961834156 0.992877009 1.10377886 1.115736402 1 17.95539576 -6.545443144 1.387564917 1.074047933 0.871779399 0.440343821 0.092684998 0.414059987 1.622014319 0.053239964 0.037869879 2.85E-07 6.545443144 -0.202268534 LSLEGDHSTPPSAY(ph)GSVK ddPTM_HeLa_A486_30min_R1 3 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHSTPPS(0.005)AY(0.693)GS(0.302)VK;LSLEGDHSTPPS(0.001)AY(0.979)GS(0.02)VK;LSLEGDHSTPPS(0.104)AY(0.862)GS(0.034)VK ;; 169.61 4.67E-11 936820000 1411600 1730060 1203570 131951 1670930 1349840 1620150 1686750 1537480 1220930 TRUE FALSE FALSE 1312654.13 1592963.745 1669624.537 307188.5964 1461346.379 1183310.465 1214771.334 1302713.846 1670750.004 915201.1811 1.434279322 1.740561286 1.824325155 0.335651442 1.59674879 1.2929512 1.327327105 1.423418013 1.825554904 1 19.80372939 LSLEGDHSTPPSAYGS(ph)VK ddPTM_HeLa_A485_30min_R1 3 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHST(0.002)PPS(0.123)AY(0.001)GS(0.875)VK;LSLEGDHSTPPS(0.013)AYGS(0.986)VK;LSLEGDHST(0.002)PPS(0.47)AY(0.001)GS(0.527)VK ;; 95.71 0.00038257 1000510000 562812 625573 486866 488980 798444 571593 907210 1011120 741082 1336280 TRUE FALSE FALSE 688007.5877 698728.3206 666977.9936 515691.7392 718948.1119 601520.7256 713377.1723 763141.2346 889810.3598 1003169.988 0.685833503 0.696520359 0.664870362 0.514062168 0.716676256 0.599619937 0.711122921 0.76072973 0.886998585 1 19.93613466 -7.738235635 1.227659423 0.999273737 0.646315252 0.818469185 0.055480745 0.172606047 0.525589291 0.052271926 0.016939638 1.83E-08 7.738235635 -0.352958485 LSLEGDHSTPPSAYGS(ph)VK ddPTM_HeLa_A486_30min_R1 2 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHS(0.001)T(0.015)PPS(0.298)AYGS(0.686)VK;LSLEGDHST(0.003)PPS(0.098)AY(0.069)GS(0.83)VK ; 78.324 0.0027097 918360000 475140 404560 220440 43877 386840 429500 479520 631310 368140 374800 TRUE FALSE FALSE 441835.1396 372501.1922 305800.2716 102147.8734 338318.9201 376512.6568 359539.0242 487574.4944 400050.6716 280947.6405 1.572660083 1.325874072 1.08846001 0.363583311 1.204206305 1.340152408 1.279736764 1.735463923 1.423933196 1 18.09994176 -6.20825527 3.956684498 1.400283158 1.07366388 0.113937518 0.333929869 0.452774494 14.76785736 0.123461744 0.120456235 6.19E-07 6.20825527 -0.326619278 LSLEGDHSTPPSAYGSVK ddPTM_HeLa_A485_30min_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 183.77 5.13E-18 80375000 57203 82463 55813 39403 84826 81420 104900 114740 80082 109490 FALSE FALSE TRUE 69927.61 92106.33052 76460.55127 41555.48612 76380.4256 85683.0253 82487.25805 86599.83509 96153.72284 82196.15801 0.850740615 1.120567345 0.930220501 0.505564823 0.92924569 1.042421293 1.003541528 1.053575218 1.169807996 1 16.32678334 -6.178246574 4.393108054 1.054411431 0.860621407 0.290392107 0.148107257 0.337801402 11.87042265 0.054244221 0.053904108 6.63E-07 6.178246574 -0.193790024 LSLEGDHSTPPSAYGSVK ddPTM_HeLa_A486_30min_R1 2 LSLEGDHSTPPSAYGSVK 18 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 151.39 3.90E-10 55851000 78956 104106 86906 15827.7 127910 99724 107941 117550 100584 76341 FALSE FALSE TRUE 73421.59213 95856.26141 120558.3306 36847.68549 111866.3351 87421.0668 80933.02012 90786.4311 109302.7021 57224.7167 1.283039853 1.675084945 2.106752773 0.643912065 1.954860444 1.527680202 1.414301805 1.58648983 1.910061044 1 15.8043508 -10.68563679 2.897590456 0.930633185 1.565165616 0.159055746 0.391041769 45896851.57 45388889.68 23509474.39 0.094036431 2.06E-11 10.68563679 0.634532431 LSLFPAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 LSLFPASPR 9 0 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 LSLFPAS(1)PR 150.33 7.05E-05 176340000 81968 106860 107450 88382 143140 114740 134560 124240 95795 121960 TRUE FALSE FALSE 100201.4988 119356.3474 147200.2264 93210.08486 128888.479 120747.609 105810.1567 93769.9452 115020.1778 91557.61651 1.094409211 1.303620081 1.607733272 1.018048399 1.407730825 1.318815557 1.155667445 1.02416324 1.256260071 1 16.48239229 -6.869245436 4.414898246 1.102808066 1.29925251 0.233498438 0.164044036 0.326939239 11.08369688 0.070091889 0.046495028 1.35E-07 6.869245436 0.196444444 LSLFPAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LSLFPASPR 9 0 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 LSLFPAS(1)PR 134.49 0.00019769 111630000 143340 184610 189930 65810 224400 179970 202880 211110 151980 171570 TRUE FALSE FALSE 133292.6062 169980.8313 263475.9825 153209.0059 196253.6596 157767.1312 152117.2782 163044.8615 165153.7488 128607.7553 1.036427437 1.321699698 2.048678806 1.191289013 1.525986198 1.226731085 1.182800196 1.267768504 1.284166327 1 16.97261812 -6.325720449 7.150179039 1.207187414 1.440560653 0.165498193 0.258865633 0.537143599 51.90067562 0.093158849 0.082189044 4.72E-07 6.325720449 0.233373238 LSLFPGTHLTPYLST(ph)SPLER ddPTM_HeLa_A485_30min_R1 1 LSLFPGTHLTPYLSTSPLER 20 0 P56524-2;P56524;H7BZT3 P56524-2 HDAC4 Histone deacetylase 4 1 0 LSLFPGTHLTPYLS(0.003)T(0.594)S(0.404)PLER 128.12 7.04E-07 59046000 39280 78855 82618 14536 87334 51260 58223 64398 53547 38248 TRUE FALSE FALSE 48017.70049 88076.4063 113181.8362 15330.06487 78638.72031 53943.89434 45783.18041 48604.28953 64293.39174 28713.4775 1.672305296 3.067423871 3.941766936 0.533897884 2.738738988 1.878695965 1.594483998 1.692734345 2.239136368 1 14.80944045 -5.255932043 24.99760211 1.747404838 2.911191118 0.344350243 0.769460996 538.5988211 2444672.801 0.205670473 0.343613956 5.55E-06 5.255932043 1.16378628 LSLFPGTHLTPYLSTS(ph)PLER ddPTM_HeLa_A486_30min_R1 1 LSLFPGTHLTPYLSTSPLER 20 0 P56524-2;P56524;H7BZT3 P56524-2 HDAC4 Histone deacetylase 4 1 0 LSLFPGTHLTPYLS(0.013)T(0.282)S(0.705)PLER 112.47 1.67E-05 65014000 55324 78135 86054 2923.7 90488 40356 43990 43887 61947 16100 TRUE FALSE FALSE 51446.07329 71943.29804 119376.4134 6806.521356 79138.15127 35377.28703 32983.23672 33894.88815 67316.61584 12068.45521 4.26285489 5.961268183 9.891606785 0.56399276 6.557438373 2.931384873 2.733012317 2.808552343 5.577898305 1 13.5589534 -5.266445828 24.99877812 3.356134465 6.630845729 0.360821334 2.146831035 471.582876 2354763.779 0.583329819 0.896326749 5.41E-06 5.266445828 3.274711263 LSLFSFKQS(ph)PPGTPVSSCQMR ddPTM_HeLa_A486_30min_R1 1 LSLFSFKQSPPGTPVSSCQMR 21 1 C9IYM5;E9PBQ4;C9J8W4;F8W6I3;P43354-2;P43354 C9IYM5 NR4A2 Nuclear receptor subfamily 4 group A member 2 1 0 LSLFS(0.024)FKQS(0.974)PPGT(0.002)PVSSCQMR 100.7 0.00018627 145690000 154120 126460 107120 58364 154650 145300 178710 179090 138950 216690 TRUE FALSE FALSE 143316.9839 116438.849 148599.7328 135874.3416 135252.3549 127374.3633 133994.8678 138315.1165 150994.2979 162429.4136 0.882333936 0.716858151 0.914857288 0.836513157 0.832683884 0.784182867 0.824942139 0.851539838 0.929599477 1 17.30945338 -7.895058646 1.996145748 0.999226918 0.825511031 0.560168184 0.049946485 0.213805347 1.833183178 0.045472307 0.012897223 1.27E-08 7.895058646 -0.173715887 LSLGPLS(ph)PEKLEEILDEANR ddPTM_HeLa_A486_30min_R1 1 LSLGPLSPEKLEEILDEANR 20 1 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 LSLGPLS(1)PEKLEEILDEANR 158.94 6.93E-11 138600000 90359 94482 52107 69361 101800 111420 136780 115960 75573 150340 TRUE FALSE FALSE 84025.30071 86994.90222 72284.22587 161475.9133 89031.29475 97674.13324 102556.1973 89558.43939 82123.72849 112693.8855 0.745606564 0.771957608 0.64142101 1.432872002 0.790027732 0.866720788 0.910042252 0.794705401 0.72873278 1 16.78204971 LSLMYARK(ac)GVAEQK ddPTM_HeLa_A485_30min_R1 1 LSLMYARKGVAEQK 14 2 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 1 LSLMYARK(1)GVAEQK 65.092 0.03494 11474000 31346 18053 12934 63790 20711 39314 51192 42168 23757 81842 FALSE TRUE FALSE 38318.80956 20164.14131 17718.82483 67274.68618 18648.94012 41372.42025 40254.411 31826.23188 28524.81199 61440.29559 0.62367554 0.328190825 0.288390944 1.094960327 0.303529466 0.673375996 0.655179319 0.518002584 0.464268795 1 15.90689754 -11.29940454 2.176206849 3.01628502 0.550304432 0.261252841 0.227036407 12152108 1518785.016 120679668.9 0.056641738 5.02E-12 11.29940454 -2.465980588 LSLMYARK(ac)GVAEQK ddPTM_HeLa_A486_30min_R1 2 LSLMYARKGVAEQK 14 2 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 1 ; LSLMYARK(1)GVAEQK;LSLMYARK(1)GVAEQK 67.93 0.030519 9511000 19745.8 21666 13447.5 20601.4 20571.3 31759 34444 33013 16007.4 53820 FALSE TRUE FALSE 18361.72139 19949.10725 18654.73214 47961.10034 17991.05573 27840.89748 25825.74689 25496.66057 17394.93432 40343.12169 0.455138835 0.49448596 0.462401801 1.188829677 0.445951007 0.690102707 0.640152418 0.631995232 0.431174723 1 15.3000351 -11.2531923 2.428726336 2.590770709 0.613959291 0.23278015 0.214799822 10966566.51 1447379.444 96848215.95 0.053170438 5.58E-12 11.2531923 -1.976811418 LSLPGLLSQVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LSLPGLLSQVSPR 13 0 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 0 LSLPGLLS(0.001)QVS(0.999)PR;LSLPGLLSQVS(1)PR ; 290.16 1.83E-57 871420000 188839 231040 261310 224780 276510 220123 257250 254600 212677 260700 TRUE FALSE FALSE 230845.5841 258058.1182 357979.443 237059.1622 248979.6935 231648.2999 202286.436 192158.9508 255359.3231 195712.2878 1.179515025 1.31855859 1.829110716 1.211263559 1.272172005 1.183616535 1.033590881 0.981844078 1.304768985 1 17.57837481 -5.993069439 1.576752555 1.087611576 1.420962682 0.359893711 0.184576802 0.423971576 2.150010536 0.07504798 0.083881226 1.02E-06 5.993069439 0.333351107 LSLPGLLSQVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 LSLPGLLSQVSPR 13 0 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 0 LSLPGLLSQVS(1)PR;LSLPGLLSQVS(1)PR ; 250.6 9.32E-36 845570000 320790 373680 299070 104880 365490 302540 338120 323240 287200 327730 TRUE FALSE FALSE 298304.2776 344068.2359 414877.9134 244165.9403 319646.8361 265215.6908 253518.7997 249645.3083 312094.7272 245664.2748 1.214276181 1.400562764 1.68880035 0.993900886 1.301153114 1.079585914 1.031972597 1.016205179 1.27041153 1 17.90632855 -5.278294926 24.98655141 1.104525181 1.431148091 0.520688567 0.147439475 633.2869441 938778.9414 0.041463381 0.061682298 5.27E-06 5.278294926 0.32662291 LSLPNTAWGSPSPEAAGYPGAGAEDEQQQLAANRHS(ph)LVEK ddPTM_HeLa_A486_30min_R1 1 LSLPNTAWGSPSPEAAGYPGAGAEDEQQQLAANRHSLVEK 40 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 LSLPNTAWGSPSPEAAGY(0.002)PGAGAEDEQQQLAANRHS(0.998)LVEK 66.604 0.0015391 208990000 54358 62990 50453 20695 53261 74167 68499 73170 52513 64813 TRUE FALSE FALSE 50547.7849 57998.44299 69989.75278 48179.00587 46580.50874 65017.02961 51359.82569 56510.78829 57064.86912 48583.40294 1.04043319 1.193791284 1.440610343 0.99167623 0.958774106 1.338255982 1.057147556 1.163170648 1.174575383 1 15.56817592 -10.70173734 2.572906891 0.973796394 1.153492069 0.090727553 0.143143579 18917023.88 14860843.92 3205453.498 0.036761472 1.99E-11 10.70173734 0.179695676 LSLQERPAGSYLEAQAGPYATGPASHIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LSLQERPAGSYLEAQAGPYATGPASHISPR 30 1 J3KPJ3;Q8N5S9;Q8N5S9-2 J3KPJ3 CAMKK1 Calcium/calmodulin-dependent protein kinase kinase 1 1 0 LSLQERPAGSYLEAQAGPYATGPAS(0.019)HIS(0.981)PR 158.99 8.54E-11 247800000 48625 74490 72851 21977 84498 72931 71376 53562 66495 56832 TRUE FALSE FALSE 45216.6386 68587.14111 101060.8582 51163.56666 73899.47293 63933.51473 53516.96986 41367.10185 72258.84014 42600.89729 1.061401085 1.609992875 2.372270648 1.200997395 1.734692874 1.50075512 1.256240438 0.971038276 1.696181178 1 15.3785962 -6.674891696 3.469511954 1.224993959 1.617899369 0.174605976 0.37480285 0.418857027 9.931216059 0.155686585 0.114238665 2.11E-07 6.674891696 0.392905409 LSLQGPETYYYLNQGQACRLQGKEDAQDFEGLLK ddPTM_HeLa_A486_30min_R1 1 LSLQGPETYYYLNQGQACRLQGKEDAQDFEGLLK 34 2 A0A0J9YY01;A0A2R8YFM0;A0A0J9YW50 A0A0J9YY01 0 0 33.427 0.036475 15678000 5929.5 5796.4 3799.9 3844.7 5809.7 7905.1 8190.8 9039.3 4728.2 9109.3 FALSE FALSE TRUE 5513.87267 5337.072154 5271.323045 8950.6559 5080.993253 6929.849135 6141.375207 6981.248717 5138.044183 6828.271988 0.807506303 0.781613879 0.771984926 1.310822989 0.74411114 1.014875967 0.89940401 1.022403432 0.752466245 1 12.73730481 LSLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LSLSPK 6 0 Q5FBB7-6;Q5FBB7;Q5FBB7-5;Q5FBB7-4;Q5FBB7-3;Q5FBB7-2 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 LS(0.002)LS(0.998)PK 89.698 0.013942 0 279560 260920 196150 504820 352870 312050 485080 480410 249510 791790 TRUE FALSE FALSE 341747.1575 291432.3243 268714.0475 532397.0383 317737.0238 328388.4555 381438.6953 362588.6942 299584.3684 594411.3248 0.574933793 0.490287301 0.45206751 0.895671089 0.534540663 0.552459958 0.641708324 0.609996275 0.504001784 1 19.18110208 -11.07610698 2.404128849 1.630041152 0.586580328 0.53139349 0.117182651 5200457.38 1867640.717 17936149.27 0.029801176 8.39E-12 11.07610698 -1.043460825 LSLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 LSLSPK 6 0 Q5FBB7-6;Q5FBB7;Q5FBB7-5;Q5FBB7-4;Q5FBB7-3;Q5FBB7-2 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 LS(0.001)LS(0.999)PK;LSLS(1)PK ; 110.12 0.0090239 176790000 825240 866200 456310 583830 784750 1015100 1329210 1181510 747710 1696330 TRUE FALSE FALSE 767394.9375 797559.1574 633005.4524 1359185.745 686319.3375 889867.2828 996627.5991 912505.9652 812522.1048 1271557.927 0.603507651 0.627229905 0.497818809 1.068913745 0.539746812 0.699824415 0.783784661 0.717628309 0.638997318 1 20.27816576 -14 0.19968988 2.365012531 0.641758896 0.283115687 0.150311959 190.5192902 1.88432775 104.1795902 0.359109225 1.00E-14 14 -1.723253635 LSLS(ph)PLR ddPTM_HeLa_A485_30min_R1 6 LSLSPLR 7 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR ;;;;; 170.05 0.00052151 8229990000 2663450 2791330 3207020 2845670 3385230 2355170 2832130 2160360 2792360 3597000 TRUE FALSE FALSE 3255925.264 3117751.762 4393430.153 3001121.746 3048184.615 2478483.059 2227022.289 1630528.323 3352761.039 2700334.098 1.205749046 1.154580007 1.626995029 1.11138905 1.128817585 0.917843115 0.824721019 0.603824662 1.241609711 1 21.36470648 -5.957638442 1.786760786 0.884640574 1.304974839 0.4281909 0.196409922 0.314107795 2.04096826 0.073104689 0.083189306 1.10E-06 5.957638442 0.420334264 LSLS(ph)PLR ddPTM_HeLa_A486_30min_R1 6 LSLSPLR 7 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR;LSLS(1)PLR ;;;;; 183.47 0.00039563 8821150000 3451310 4327090 3979760 1195710 4187200 3462980 3718880 3663440 3556590 3351850 TRUE FALSE FALSE 3209390.992 3984195.629 5520829.654 2783673.308 3662002.332 3035752.737 2788376.89 2829354.684 3864878.085 2512524.943 1.277356868 1.585733762 2.197323322 1.107918676 1.457498896 1.208247801 1.10979073 1.126100138 1.538244663 1 21.26070649 -5.311159944 24.99991086 1.231043264 1.676699748 0.400849447 0.260620298 369.4924826 185783.0659 0.073268995 0.108675667 4.88E-06 5.311159944 0.445656484 LSLSPALQDALHTFPQLQVEQSGEGS(ph)PEEGAVR ddPTM_HeLa_A485_30min_R1 1 LSLSPALQDALHTFPQLQVEQSGEGSPEEGAVR 33 0 Q9ULL5;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 LSLSPALQDALHTFPQLQVEQS(0.05)GEGS(0.95)PEEGAVR 206.2 1.98E-29 198290000 27456 33025 28142 28671 37046 31306 36828 42384 33011 45681 TRUE FALSE FALSE 33563.49248 36886.98647 38552.89689 30237.22413 33357.57016 32945.13375 28959.39694 31989.25754 39636.00491 34293.5674 0.978711024 1.075624068 1.124201995 0.881717081 0.972706332 0.960679692 0.844455656 0.932806353 1.155785411 1 15.06565037 -5.257544599 24.96325294 0.956462484 1.06112353 0.207494538 0.084604845 490.7162736 3145192.923 0.023529906 0.038892422 5.53E-06 5.257544599 0.104661046 LSLSPALQDALHTFPQLQVEQSGEGS(ph)PEEGAVR ddPTM_HeLa_A486_30min_R1 2 LSLSPALQDALHTFPQLQVEQSGEGSPEEGAVR 33 0 Q9ULL5;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 LSLSPALQDALHTFPQLQVEQS(0.041)GEGS(0.959)PEEGAVR;LSLSPALQDALHTFPQLQVEQS(0.048)GEGS(0.952)PEEGAVR ; 160.8 2.56E-14 263530000 58092 68623 64024 20758 85514 57357 69831 66687 65600 64433 TRUE FALSE FALSE 54020.05079 63185.06356 88815.80742 48325.67305 74788.03673 50280.8765 52358.5452 51503.82587 71286.26082 48298.55741 1.118460958 1.308218443 1.838891515 1.000561417 1.548452806 1.041043029 1.084060229 1.066363648 1.475950104 1 15.55969248 -6.275505376 24.93307193 1.134542182 1.366190385 0.178427115 0.246105861 1404.87021 2490235.071 0.084942189 0.075291925 5.30E-07 6.275505376 0.231648204 LSLTSDPEEGDPLALGPES(ph)PGEPQPPQLK ddPTM_HeLa_A485_30min_R1 1 LSLTSDPEEGDPLALGPESPGEPQPPQLK 29 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 LSLTSDPEEGDPLALGPES(1)PGEPQPPQLK 55.063 0.019332 42047000 27404 25438 24173 26032 34790 30974 36284 48236 28252 42175 TRUE FALSE FALSE 33499.92526 28412.75282 33115.59862 27454.06224 31326.18544 32595.75075 28531.62699 36406.04537 33921.91726 31661.54867 1.058063382 0.897389863 1.045924789 0.86711053 0.98940787 1.029505887 0.901144391 1.14985043 1.071391599 1 14.9504442 -7.261746961 24.99999983 1.08296576 0.969037657 0.311742434 0.070378584 29.59080224 2404849.309 0.033321614 0.017580229 5.47E-08 7.261746961 -0.113928102 LSLTSDPEEGDPLALGPES(ph)PGEPQPPQLK ddPTM_HeLa_A486_30min_R1 1 LSLTSDPEEGDPLALGPESPGEPQPPQLK 29 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 LSLTSDPEEGDPLALGPES(1)PGEPQPPQLK 75.654 0.0030356 51169000 47127 42682 28184 15126 41706 42296 47913 43644 36930 40388 TRUE FALSE FALSE 43823.64066 39299.72287 39097.59959 35214.09243 36474.84459 37077.94955 35924.66063 33707.21394 40131.12213 30274.58192 1.447539087 1.298109516 1.29143318 1.163157018 1.204800935 1.2247221 1.186627803 1.113383301 1.325571473 1 14.88581942 -1 0.449912118 1.163142533 7.517972448 0.553018625 0.078590608 65.15368072 0.786800034 0.045940057 380.2451953 0.1 1 6.354829915 LSMEDS(ph)KSPPPKATEEK ddPTM_HeLa_A485_30min_R1 1 LSMEDSKSPPPKATEEK 17 2 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LS(0.072)MEDS(0.496)KS(0.431)PPPKAT(0.002)EEK 44.105 0.029733 602800000 749300 432210 222870 1469100 739540 930300 1736900 1840600 565630 2211800 TRUE FALSE FALSE 915979.1999 482753.1998 305318.8874 1549353.213 665908.8009 979009.0695 1365797.126 1389189.964 679146.7527 1660438.965 0.551648822 0.290738299 0.183878416 0.933098563 0.401043829 0.589608585 0.82255184 0.836640186 0.409016391 1 20.66313326 -6.02076843 0.145845477 1.132028395 2.11E-15 0.324263736 0.221148465 14.48025054 0.80605912 1.769646731 4.175026025 9.53E-07 6.02076843 -1.132028395 LSMEDS(ph)KSPPPKATEEKK ddPTM_HeLa_A485_30min_R1 1 LSMEDSKSPPPKATEEKK 18 3 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LS(0.003)MEDS(0.766)KS(0.23)PPPKATEEKK 63.706 0.014961 1602400000 537530 298240 92323 1088100 522790 743370 1668200 1748700 275050 1453100 TRUE FALSE FALSE 657101.694 333116.5737 126477.1196 1147540.148 470739.192 782291.7037 1311775.442 1319828.583 330250.0121 1090868.912 0.602365405 0.305368106 0.11594163 1.051950546 0.431526819 0.71712714 1.202505111 1.209887428 0.302740328 1 20.05704632 -5.725406973 1.025418542 0.915906409 0.365164939 0.26870387 0.327043769 0.699902872 1.567266462 0.148479835 0.238821436 1.88E-06 5.725406973 -0.55074147 LSMEDSKS(ph)PPPK ddPTM_HeLa_A485_30min_R1 3 LSMEDSKSPPPK 12 1 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LSMEDS(0.001)KS(0.999)PPPK;LSMEDS(0.005)KS(0.995)PPPK;LSMEDS(0.005)KS(0.995)PPPK ;; 120.7 5.54E-05 4107250000 1452400 759820 605011 2846580 1288440 1083380 1933880 1373920 950880 3618880 TRUE FALSE FALSE 1775481.369 848674.3394 828829.7455 3002081.457 1160158.39 1140104.102 1520690.74 1036963.966 1141712.894 2716759.817 0.653529016 0.312384751 0.305080243 1.10502277 0.427037526 0.419655832 0.55974427 0.38169144 0.420248005 1 21.37345559 -11.17769416 2.338580218 2.281811766 0.507758776 0.303226563 0.223104125 31386081.83 7165812.246 212872756.6 0.055954722 6.64E-12 11.17769416 -1.77405299 LSMEDSKS(ph)PPPK ddPTM_HeLa_A486_30min_R1 6 LSMEDSKSPPPK 12 1 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LSMEDS(0.005)KS(0.995)PPPK;LSMEDS(0.048)KS(0.952)PPPK;LSMEDS(0.004)KS(0.996)PPPK;LSMEDSKS(1)PPPK;LSMEDS(0.147)KS(0.853)PPPK;LSMEDS(0.011)KS(0.988)PPPK ;;;;; 184.99 2.89E-13 9656580000 3589800.3 3892982.6 1539921.5 2337419.3 3102710.4 5488018.1 6395219.4 5614960.3 3322338 7364614 TRUE FALSE FALSE 3338173.837 3584488.481 2136220.345 5441630.257 2713539.53 4810962.225 4795067.864 4336556.413 3610320.933 5520466.719 0.60469051 0.649308956 0.386963721 0.98571924 0.491541688 0.871477444 0.868598274 0.785541628 0.653988352 1 22.39635881 -5.634280947 0.897235549 0.818077444 0.567918631 0.25306681 0.169166258 0.942305823 1.595410327 0.078392499 0.149708653 2.32E-06 5.634280947 -0.250158813 LSMEDSKS(ph)PPPKATEEK ddPTM_HeLa_A485_30min_R1 3 LSMEDSKSPPPKATEEK 17 2 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LSMEDS(0.034)KS(0.965)PPPKATEEK;LSMEDS(0.022)KS(0.978)PPPKATEEK;LS(0.117)MEDS(0.083)KS(0.8)PPPKATEEK ;; 113.17 5.72E-05 5103940000 3280640 1876120 926850 6294300 2981170 3588680 7134600 6969400 1974890 8702700 TRUE FALSE FALSE 4010407.05 2095515.914 1269730.384 6638141.671 2684354.247 3776577.736 5610234.426 5260143.722 2371232.308 6533277.051 0.613843102 0.320744995 0.194348162 1.016050845 0.410874088 0.578052592 0.858716748 0.805130975 0.362946847 1 22.63937539 -9.237612231 0.082455615 1.644683299 4.74E-13 0.232868672 0.243782247 79.65706396 1.823185757 24.06071834 12.34164108 5.79E-10 9.237612231 -1.644683299 LSMEDSKS(ph)PPPKATEEK ddPTM_HeLa_A486_30min_R1 4 LSMEDSKSPPPKATEEK 17 2 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LSMEDS(0.211)KS(0.789)PPPKATEEK;LS(0.001)MEDS(0.004)KS(0.994)PPPKAT(0.001)EEK;LS(0.008)MEDS(0.009)KS(0.983)PPPKAT(0.001)EEK;LS(0.013)MEDS(0.302)KS(0.686)PPPKATEEK ;;; 122.18 1.33E-05 5409660000 5935700 5055080 1632800 5133880 4870880 8756690 13262950 11547770 4414730 16226810 TRUE FALSE FALSE 5519638.082 4654497.051 2265063.888 11951932.09 4259928.811 7676378.619 9944419.629 8918594.857 4797402.351 12163511.16 0.453786576 0.382660647 0.186217932 0.982605428 0.350221968 0.631098909 0.817561599 0.733225361 0.394409335 1 23.53605641 -7.596976207 0.10400415 1.368948648 2.00E-14 0.311348726 0.222123737 11.97581618 1.21884898 7.661621766 7.121289993 2.53E-08 7.596976207 -1.368948648 LSMEDSKS(ph)PPPKATEEKK ddPTM_HeLa_A485_30min_R1 1 LSMEDSKSPPPKATEEKK 18 3 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LSMEDS(0.003)KS(0.997)PPPKATEEKK 153.83 1.19E-07 1233600000 664580 344290 132670 1218100 595910 872750 1892100 2031400 407190 1987500 TRUE FALSE FALSE 812413.5282 384551.7206 181750.1539 1284641.719 536579.108 918445.8405 1487837.378 1533195.965 488909.298 1492052.827 0.54449381 0.257733315 0.121812144 0.860989434 0.359624739 0.615558527 0.997174732 1.027574853 0.327675595 1 20.50886719 -6.041403195 0.980131437 0.832923048 0.345184394 0.328774848 0.265287019 0.632241136 1.310677899 0.140315071 0.160395071 9.09E-07 6.041403195 -0.487738654 LSMEDSKS(ph)PPPKATEEKK ddPTM_HeLa_A486_30min_R1 1 LSMEDSKSPPPKATEEKK 18 3 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LS(0.004)MEDS(0.129)KS(0.867)PPPKATEEKK 90.884 0.00070651 1600500000 1185000 827810 171950 1307800 880710 1731500 2975400 2575500 739180 3883300 TRUE FALSE FALSE 1101937.619 762211.3208 238533.645 3044624.493 770243.1395 1517885.135 2230923.449 1989114.873 803252.7176 2910896.404 0.37855611 0.261847629 0.081945082 1.045940518 0.264606854 0.521449383 0.766404275 0.683334134 0.275946858 1 21.47303207 -11.76642432 0.090038684 2.068922268 1.22E-21 0.279177217 0.268091428 165.263936 1.696437733 43.80913726 7.616276841 1.71E-12 11.76642432 -2.068922268 LSMLS(ph)QEIQTLKR ddPTM_HeLa_A485_30min_R1 1 LSMLSQEIQTLKR 13 1 F8W6C0;G3V0F5;Q9UHY8;Q9UHY8-2;Q7Z674 F8W6C0 FEZ2;DKFZp779C2259 Fasciculation and elongation protein zeta-2 1 0 LSMLS(1)QEIQTLKR 133.86 8.45E-06 72007000 61761 76685 47374 52466 86687 83965 101410 115490 62910 71276 TRUE FALSE FALSE 75499.52138 85652.64368 64899.614 55332.08473 78056.1379 88361.27757 79742.92506 87165.89642 75535.45996 53508.20494 1.410989613 1.600738499 1.212890884 1.034085984 1.45876951 1.651359407 1.490293407 1.62901926 1.411661259 1 15.70747251 -5.972402305 24.99980632 1.487580301 1.317662484 0.050678827 0.216925999 481.2196956 435918.2898 0.067522926 0.076562417 1.07E-06 5.972402305 -0.169917816 LSMPQSAAVST(ph)TPPHNR ddPTM_HeLa_A485_30min_R1 1 LSMPQSAAVSTTPPHNR 17 0 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.006)T(0.535)T(0.459)PPHNR 132.52 1.33E-05 241890000 212220 260530 246850 216300 337530 218730 245660 267850 241200 316340 TRUE FALSE FALSE 259427.6068 290996.7172 338170.0873 228115.9213 303924.3281 230182.3646 193172.7341 202159.3675 289606.6276 237482.2598 1.092408364 1.225340863 1.423980417 0.960559839 1.279776975 0.969261303 0.813419639 0.851260922 1.219487417 1 17.85746022 -6.307047863 8.592846681 0.951064221 1.197477722 0.353280072 0.151554469 0.412480036 73.72886639 0.05331736 0.047150003 4.93E-07 6.307047863 0.246413502 LSMPQSAAVST(ph)TPPHNRR ddPTM_HeLa_A485_30min_R1 3 LSMPQSAAVSTTPPHNRR 18 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQS(0.001)AAVS(0.175)T(0.597)T(0.227)PPHNRR;LSMPQSAAVS(0.018)T(0.592)T(0.391)PPHNRR;LSMPQSAAVS(0.034)T(0.483)T(0.483)PPHNRR ;; 102.58 0.00019452 1685100000 232661 366571 329704 194333 396146 328494 339331 494510 288688 276856 TRUE FALSE FALSE 284415.6368 409438.2897 451675.2297 204948.9197 356704.3133 345693.4379 266830.1598 373230.6471 346625.0336 207840.8944 1.368429623 1.969960199 2.173177859 0.986085632 1.716237386 1.663259961 1.28381934 1.795751737 1.667742215 1 17.66512002 -11.10791429 1.851737446 6.70E-05 1.631226223 0.250419176 0.324201741 1936881.684 452800.7789 8145763.183 0.090238781 7.80E-12 11.10791429 1.631159228 LSMPQSAAVST(ph)TPPHNRR ddPTM_HeLa_A486_30min_R1 1 LSMPQSAAVSTTPPHNRR 18 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.082)T(0.519)T(0.399)PPHNRR 78.987 0.0029986 297030000 49403 49565 45401 9774.2 67092 34867 55176 48432 41868 47937 TRUE FALSE FALSE 45940.10482 45637.28889 62981.48308 22754.83156 58676.69575 30565.46404 41370.38121 37405.09086 45497.15195 35933.26318 1.278484077 1.270056901 1.752734862 0.633252578 1.632935352 0.850617543 1.151311558 1.040960034 1.266156979 1 15.13303234 -5.246125123 24.99959557 1.100063579 1.417388377 0.25205011 0.275910475 1216.677642 1986149.5 0.07016305 0.120917404 5.67E-06 5.246125123 0.317324797 LSMPQSAAVSTT(ph)PPHNR ddPTM_HeLa_A485_30min_R1 1 LSMPQSAAVSTTPPHNR 17 0 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.003)T(0.098)T(0.899)PPHNR 123.14 2.72E-05 370720000 166360 228050 242720 231950 282670 178270 240250 240720 244650 320680 TRUE FALSE FALSE 203366.2081 254718.4637 332512.2284 244620.8412 254526.3823 187603.9415 188918.6248 181683.0426 293749.0109 240740.3777 0.844753215 1.058062907 1.381206724 1.016118873 1.057265029 0.779279086 0.784740087 0.754684546 1.220190039 1 17.87711861 -6.121229965 5.779100543 0.885303344 1.088853477 0.16824011 0.177542836 0.370270657 16.03680973 0.060348135 0.060571186 7.56E-07 6.121229965 0.203550132 LSMPQSAAVSTT(ph)PPHNR ddPTM_HeLa_A486_30min_R1 2 LSMPQSAAVSTTPPHNR 17 0 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.004)T(0.247)T(0.75)PPHNR;LSMPQSAAVS(0.011)T(0.353)T(0.635)PPHNR ; 127.97 2.00E-05 690680000 421800 469100 430830 103597 472250 432650 421170 392920 429300 381230 TRUE FALSE FALSE 392233.9982 431926.8076 597658.914 241179.0515 413016.0014 379274.0419 315788.8113 303460.6934 466512.0697 285767.5266 1.372563226 1.511462176 2.091416478 0.843969412 1.445286686 1.32721183 1.10505492 1.061914546 1.632488041 1 18.12448246 -5.267636025 24.99915309 1.216135195 1.643778781 0.36681804 0.274041607 551.4105115 2224558.398 0.075278617 0.114855823 5.40E-06 5.267636025 0.427643586 LSMPQSAAVSTT(ph)PPHNRR ddPTM_HeLa_A486_30min_R1 1 LSMPQSAAVSTTPPHNRR 18 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.031)T(0.471)T(0.498)PPHNRR 118.48 3.98E-05 453690000 89357 85475 77554 24202 116880 65275 95929 93148 62296 89622 TRUE FALSE FALSE 83093.53574 78701.64971 107584.9858 56343.4791 102219.8205 57222.03417 71926.54957 71940.23381 67695.86744 67180.06786 1.236877818 1.17150298 1.601442053 0.838693394 1.521579596 0.851771009 1.070653125 1.07085682 1.007677866 1 16.03574563 -6.276269683 24.99836681 1.00902416 1.262329236 0.316227628 0.200750104 1051.186269 1771903.232 0.06666636 0.059036579 5.29E-07 6.276269683 0.253305076 LSNHISSLFR ddPTM_HeLa_A485_30min_R1 2 LSNHISSLFR 10 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 99.343 0.0045092 46668000 24420 64837 92297 10144.4 81062 47719 46455 51185 59754 21448.9 FALSE FALSE TRUE 29852.14475 72419.12314 126441.5011 10698.56289 72991.18265 50217.49305 36529.50975 38631.7985 71746.0797 16102.08397 1.853930511 4.497500031 7.852492966 0.66442101 4.533027079 3.118695267 2.268620001 2.399180042 4.455701501 1 13.9749598 -5.282051646 24.99493565 2.776602607 4.710928119 0.221179767 1.792120948 1274.858887 1545922.202 0.499040085 0.741124876 5.22E-06 5.282051646 1.934325513 LSNHISSLFR ddPTM_HeLa_A486_30min_R1 1 LSNHISSLFR 10 0 P11413-2;P11413;E7EM57;E7EUI8;E9PD92;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 78.342 0.023609 18312000 14996 24500 30955 2510.2 31538 12148 11528 13753 20433 5138.5 FALSE FALSE TRUE 13944.85784 22558.53077 42941.605 5843.872458 27582.20996 10649.30327 8643.572469 10621.74213 22204.14889 3851.786154 3.620361381 5.856641535 11.14849145 1.517185073 7.160888185 2.764770121 2.244042666 2.757614702 5.764636977 1 11.91131189 -6.073513477 1.387603812 2.967397153 6.23216972 0.2143875 2.624008218 0.661497426 2.603479668 1.123422076 1.186224615 8.44E-07 6.073513477 3.264772567 LSNIFVIGK ddPTM_HeLa_A485_30min_R1 2 LSNIFVIGK 9 0 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 ; ; 136.57 0.0010064 50515000 96983 113027 95678 101839 131191 127702 144899 166692 103754 160642 FALSE FALSE TRUE 118556.5338 126244.5244 131073.2737 107402.2067 118129.1634 134388.2793 113940.1449 125810.5256 124576.4761 120596.9058 0.983081058 1.046830544 1.086870951 0.890588411 0.979537266 1.114359265 0.944801562 1.043231788 1.032998942 1 16.87983337 LSNIFVIGK ddPTM_HeLa_A486_30min_R1 1 LSNIFVIGK 9 0 P62701 P62701 RPS4X "40S ribosomal protein S4, X isoform" 0 0 111.61 0.0086799 21871000 48226 56051 42899 18349 64058 55407 62017 62489 53682 67046 FALSE FALSE TRUE 44845.60644 51609.31463 59510.64168 42717.39931 56023.24832 48571.44768 46499.69065 48261.61883 58335.19898 50257.2452 0.892321222 1.026902975 1.184120646 0.849974947 1.114729789 0.966456627 0.925233575 0.960291767 1.160732124 1 15.61704397 -7.740501178 24.99687589 1.080366216 0.994250438 0.111995377 0.10121442 474.2756966 566213.1995 0.066642362 0.025131319 1.82E-08 7.740501178 -0.086115778 LSNKS(ph)MVS(ph)QSEPK ddPTM_HeLa_A486_30min_R1 1 LSNKSMVSQSEPK 13 1 Q96L42 Q96L42 KCNH8 Potassium voltage-gated channel subfamily H member 8 2 0 LS(0.382)NKS(0.621)MVS(0.654)QS(0.343)EPK 44.511 0.029628 111000000 144540 140210 125600 54857 175760 157510 175210 189980 132880 165410 TRUE FALSE FALSE 134408.4924 129099.249 174235.6837 127709.8683 153714.5419 138078.0176 131370.6048 146725.7012 144398.1454 123990.2594 1.084024609 1.041204766 1.405236868 1.029999203 1.239730788 1.113619879 1.059523591 1.183364742 1.164592655 1 16.91986726 -6.452929617 24.99914302 1.11278023 1.161519039 0.055348773 0.112479414 634.2593671 226676.695 0.038953131 0.034353419 3.52E-07 6.452929617 0.04873881 LSNPQIEWQNSTIDS(ph)EDGEQFDNMTDGVAEPMHGSLAGVK ddPTM_HeLa_A485_30min_R1 1 LSNPQIEWQNSTIDSEDGEQFDNMTDGVAEPMHGSLAGVK 40 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LSNPQIEWQNS(0.038)T(0.038)IDS(0.831)EDGEQFDNMT(0.065)DGVAEPMHGS(0.026)LAGVK 54.52 0.01038 129490000 70281 72246 61040 64335 89634 61321 77037 61166 62335 76566 TRUE FALSE FALSE 85914.76598 80694.54124 83621.23609 67849.45815 80709.72424 64531.67274 60577.41562 46164.9426 74845.06273 57479.50529 1.4947026 1.403883712 1.454800901 1.18041131 1.404147858 1.122690121 1.053895911 0.803154835 1.302117378 1 15.81076002 -6.124283654 0.944502289 1.011737019 1.440004644 0.592178418 0.137828298 0.375194355 0.722707872 0.075199108 0.079396218 7.51E-07 6.124283654 0.428267625 LSPEPWT(ph)PETGLVTDAFK ddPTM_HeLa_A485_30min_R1 2 LSPEPWTPETGLVTDAFK 18 0 O95573;O60488-2;O60488 O95573;O60488-2 ACSL3;ACSL4 Long-chain-fatty-acid--CoA ligase 3;Long-chain-fatty-acid--CoA ligase 4 1 0 LSPEPWT(1)PETGLVTDAFK;LSPEPWT(0.984)PET(0.016)GLVTDAFK ; 149 1.78E-07 44112000 66088 63856 51043 73832 81442 77473 105983 110214 64396 119453 TRUE FALSE FALSE 80789.0476 71323.40373 69925.92978 77865.25521 73333.34852 81529.36648 83338.86625 83183.84369 77319.68652 89675.56547 0.900903687 0.795349361 0.779765697 0.868299573 0.817762878 0.909159213 0.929337505 0.9276088 0.862215768 1 16.45242732 -6.329090263 4.549075884 0.92299409 0.829319764 0.519164395 0.044895108 0.187114003 7.623875632 0.01580398 0.013996312 4.69E-07 6.329090263 -0.093674326 LSPEPWT(ph)PETGLVTDAFK ddPTM_HeLa_A486_30min_R1 1 LSPEPWTPETGLVTDAFK 18 0 O95573;O60488-2;O60488 O95573;O60488-2 ACSL3;ACSL4 Long-chain-fatty-acid--CoA ligase 3;Long-chain-fatty-acid--CoA ligase 4 1 0 LSPEPWT(1)PETGLVTDAFK 111.43 0.00048025 13585000 22912 22169 12550 11181 23792 28162 28655 28440 21113 35252 TRUE FALSE FALSE 21305.98712 20412.2477 17409.6961 26029.93306 20807.78551 24687.65877 21485.21592 21964.83284 22943.09184 26424.66975 0.806291519 0.772469359 0.658842524 0.985061812 0.787437864 0.934265556 0.813074151 0.831224498 0.868245169 1 14.68959782 -13.99999958 0.052212883 1.660088151 0.509520521 0.341773451 0.080349462 608.4895967 2.338403776 55.11623894 11.52406543 1.00E-14 13.99999958 -1.15056763 LSPFFTLDLS(ph)PTEDKSSKPSSFTEK ddPTM_HeLa_A485_30min_R1 1 LSPFFTLDLSPTEDKSSKPSSFTEK 25 2 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 LSPFFT(0.006)LDLS(0.939)PT(0.053)EDKS(0.001)SKPSSFTEK 72.103 0.0042456 285280000 58307 36455 27229 78993 66256 69832 138740 147520 48285 123750 TRUE FALSE FALSE 71277.19099 40718.09513 37302.14019 83308.18757 59659.32 73488.29554 109097.0656 111340.4887 57975.3566 92901.40245 0.767234822 0.438293654 0.401523973 0.896737674 0.642178895 0.791035373 1.17433174 1.198480171 0.624052545 1 16.50341276 -6.129772867 1.221759508 1.006505167 0.566775498 0.412527981 0.201984854 0.433814218 1.339435992 0.097205243 0.098540116 7.42E-07 6.129772867 -0.439729669 LSPFHGSSPPQSTPLS(ph)PPPLTPK ddPTM_HeLa_A485_30min_R1 2 LSPFHGSSPPQSTPLSPPPLTPK 23 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 LSPFHGSSPPQS(0.001)T(0.005)PLS(0.994)PPPLTPK;LSPFHGSSPPQST(0.001)PLS(0.999)PPPLTPK ; 110.08 0.00014609 380040000 240860 575290 606940 81189 695420 357440 411530 458130 402880 122915 TRUE FALSE FALSE 294438.476 642565.1611 831472.3629 85624.14949 626181.543 376155.0057 323603.2536 345772.8992 483734.3206 92274.55258 3.190895732 6.963622615 9.010852284 0.927928092 6.786069675 4.076476072 3.506960961 3.747218377 5.24233721 1 16.49364522 -8.711861419 0.230419915 5.09E-12 6.147755918 0.230013856 2.160476657 9.296079786 1.026409064 16.5278545 5.486633929 1.94E-09 8.711861419 6.147755918 LSPFMADIR ddPTM_HeLa_A485_30min_R1 1 LSPFMADIR 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 95.909 0.03246 19717000 17669 21563 22518 14766 28327 22986 23535 26591 20211 24988 FALSE FALSE TRUE 21599.40809 24084.60528 30848.34525 15572.62919 25506.66442 24189.51142 18506.55499 20069.51556 24267.16231 18758.95147 1.151418731 1.283899333 1.644459996 0.830143903 1.359706296 1.289491657 0.986545278 1.069863398 1.293631062 1 14.19529157 -6.205705202 0.680136134 1.093242979 1.301119493 0.102664579 0.209194555 1.814612179 1.850760237 0.156403296 0.171434327 6.23E-07 6.205705202 0.207876515 LSPFVLSAGS(ph)GSPSATSILQK ddPTM_HeLa_A485_30min_R1 1 LSPFVLSAGSGSPSATSILQK 21 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-4 SYNRG Synergin gamma 1 0 LSPFVLS(0.012)AGS(0.461)GS(0.461)PS(0.02)AT(0.023)S(0.023)ILQK 56.407 0.026769 38595000 27106 27416 27876 36061 35789 32001 39409 37124 29566 49226 TRUE FALSE FALSE 33135.63619 30622.06271 38188.49242 38030.92112 32225.7215 33676.52288 30988.94521 28019.28079 35499.625 36954.86414 0.896651549 0.828634158 1.033382027 1.029118142 0.872029224 0.911287963 0.838562012 0.758202782 0.960621175 1 15.17347665 LSPFVLSAGS(ph)GSPSATSILQK ddPTM_HeLa_A486_30min_R1 1 LSPFVLSAGSGSPSATSILQK 21 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-4 SYNRG Synergin gamma 1 0 LSPFVLSAGS(0.585)GS(0.391)PS(0.009)AT(0.012)S(0.002)ILQK 69.737 0.0010011 0 39381 49631 24137 25478 44508 54766 54665 54176 37461 57035 TRUE FALSE FALSE 36620.59526 45698.05881 33483.49281 59314.07159 38925.39162 48009.52774 40987.23881 41841.30745 40708.14964 42753.06476 0.856560704 1.068883811 0.783183451 1.387364202 0.910470205 1.122949384 0.958697091 0.978673872 0.952169157 1 15.38374022 -3.472080322 1.39997014 1.023802158 1.06E-15 0.086015265 0.151138224 26.50969072 8.938190756 0.040815783 65.18429796 0.000337225 3.472080322 -1.023802158 LSPFVLSAGSGS(ph)PSATSILQK ddPTM_HeLa_A485_30min_R1 1 LSPFVLSAGSGSPSATSILQK 21 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-4 SYNRG Synergin gamma 1 0 LSPFVLSAGS(0.168)GS(0.804)PS(0.019)AT(0.003)S(0.005)ILQK 113.47 6.42E-05 39778000 44878 39592 40140 51418 54817 39477 49567 45511 41658 65859 TRUE FALSE FALSE 54860.95627 44221.94 54989.45636 54226.83514 49359.22701 41543.95468 38976.60552 34349.35589 50018.37849 49441.56335 1.109612087 0.894428432 1.112211116 1.096786418 0.998334674 0.840263775 0.788336834 0.694746557 1.011666604 1 15.59343674 -6.179983523 3.818691541 0.84235754 1.045954733 0.401663823 0.106110208 0.220871772 6.115355572 0.035941039 0.035535034 6.61E-07 6.179983523 0.203597193 LSPPVASGGIPHQS(ph)PPTK ddPTM_HeLa_A486_30min_R1 2 LSPPVASGGIPHQSPPTK 18 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LSPPVAS(0.001)GGIPHQS(0.989)PPT(0.009)K;LSPPVASGGIPHQS(1)PPTK ; 90.884 0.00016184 453110000 655820 654380 414410 115097 662010 656020 714950 695640 567650 657990 TRUE FALSE FALSE 609850.4047 602524.5456 574880.6503 267951.6327 578974.5328 575086.9223 536061.948 537257.9577 616854.359 493225.0212 1.236454718 1.221601743 1.165554515 0.543264476 1.173854748 1.165972726 1.086850677 1.089275553 1.250655041 1 18.91188646 LSPS(ph)PSLR ddPTM_HeLa_A485_30min_R1 1 LSPSPSLR 8 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LS(0.261)PS(0.739)PSLR 109.88 0.0011518 0 58887 54422 69815 72351 100380 56794 77717 66923 63095 95410 TRUE FALSE FALSE 71986.20999 60786.17949 95642.47374 76303.35193 90385.81474 59767.64602 61112.12806 50510.02932 75757.58776 71626.04289 1.005028438 0.848660306 1.335303053 1.065301793 1.261912722 0.834440151 0.853211005 0.70519084 1.05768216 1 16.12819662 -6.283450654 24.47931594 0.869373369 1.09988246 0.320646661 0.153604474 720.0992514 800838.3492 0.054281667 0.0479159 5.21E-07 6.283450654 0.230509091 LSPS(ph)PSSR ddPTM_HeLa_A485_30min_R1 9 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 0 LSPS(0.75)PS(0.248)S(0.002)R;LS(0.002)PS(0.997)PS(0.001)SR;LS(0.44)PS(0.559)PS(0.001)SR;LSPS(0.985)PS(0.014)SR;LSPS(0.988)PS(0.011)S(0.001)R;LS(0.002)PS(0.655)PS(0.335)S(0.008)R;LSPS(0.908)PS(0.091)S(0.001)R;LS(0.224)PS(0.77)PS(0.005)SR;LS(0.036)PS(0.944)PS(0.019)SR ;;;;;;;; 183.95 6.73E-06 47680120000 13126670 17380170 18475920 15366310 21814620 15765390 19241250 20718220 16270190 20431290 TRUE FALSE FALSE 16046652.46 19412629.69 25310931.66 16205732.61 19642679.84 16590841.44 15130199.75 15637044.06 19535467.89 15338145.41 1.046192484 1.265643868 1.650195051 1.056564022 1.280642432 1.081671936 0.986442581 1.019487274 1.273652542 1 23.87062072 -6.049718764 1.647105038 1.067222763 1.292632852 0.214873108 0.173591305 0.566613387 3.101319071 0.070275783 0.07495771 8.92E-07 6.049718764 0.225410089 LSPS(ph)PSSR ddPTM_HeLa_A486_30min_R1 7 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 0 LS(0.006)PS(0.897)PS(0.098)SR;LS(0.008)PS(0.947)PS(0.044)SR;LS(0.003)PS(0.975)PS(0.022)SR;LS(0.006)PS(0.751)PS(0.222)S(0.022)R;LS(0.031)PS(0.92)PS(0.049)SR;LS(0.063)PS(0.919)PS(0.018)SR;LS(0.175)PS(0.769)PS(0.055)SR ;;;;;; 161.44 4.04E-05 74121570000 12206420 14850360 13414860 5509970 16909640 13457390 15194410 15288450 12198470 14023300 TRUE FALSE FALSE 11350812.99 13673563.39 18609453.05 12827488.62 14788675.28 11797154.05 11392607.91 11807603.68 13255843.2 10511774.4 1.07981893 1.300785468 1.770343649 1.220297176 1.406867643 1.122279988 1.08379494 1.123274076 1.261047155 1 23.32550288 -6.267026331 23.97513154 1.12364107 1.368098053 0.31232763 0.175653862 340.1694405 1459753.558 0.062417864 0.056621407 5.41E-07 6.267026331 0.244456983 LSPS(ph)PTS(ph)QR ddPTM_HeLa_A486_30min_R1 1 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 LS(0.003)PS(0.997)PT(0.151)S(0.849)QR 125.46 0.00061493 817270000 1058200 1380600 1057100 429500 1282000 1187500 1238300 1253800 1072700 1296400 TRUE FALSE FALSE 984025.6446 1271196.228 1466437.43 999897.7057 1121199.606 1040998.324 928464.2426 968337.1103 1165682.5 971773.0019 1.012608544 1.308120544 1.509032899 1.028941639 1.153766984 1.071236103 0.955433255 0.996464306 1.199541969 1 19.89025983 -5.313141655 24.9977234 1.058043816 1.279741302 0.367693465 0.131390896 353.4717464 170900.6267 0.037615228 0.055792462 4.86E-06 5.313141655 0.221697486 LSPS(ph)PTSQR ddPTM_HeLa_A485_30min_R1 8 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LSPS(1)PTSQR;LSPS(1)PTSQR;LS(0.001)PS(0.997)PT(0.002)SQR;LSPS(0.988)PT(0.012)SQR;LSPS(0.972)PT(0.028)SQR;LS(0.006)PS(0.994)PTSQR;LSPS(1)PTSQR;LS(0.004)PS(0.996)PTSQR ;;;;;;; 209.8 1.78E-11 2.74E+11 11406980 15045620 14613270 12851450 16893570 13480260 17001680 17329870 12937930 16091390 TRUE FALSE FALSE 13944423.35 16805074.38 20019326.68 13553492.17 15211586.85 14186065.57 13369132.18 13079692.21 15534453.88 12080102.61 1.154329876 1.391136724 1.657214953 1.121968298 1.259226626 1.174333201 1.106706839 1.08274678 1.285953801 1 23.52612937 -5.315695868 24.99989268 1.154825739 1.399919114 0.417849267 0.136977568 297.197039 136939.5519 0.038566068 0.057202765 4.83E-06 5.315695868 0.245093375 LSPS(ph)PTSQR ddPTM_HeLa_A486_30min_R1 8 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LSPS(1)PTSQR;LSPS(1)PTSQR;LSPS(1)PTSQR;LSPS(0.941)PT(0.059)SQR;LSPS(0.975)PT(0.025)SQR;LSPS(1)PTSQR;LSPS(1)PTSQR;LSPS(1)PTSQR ;;;;;;; 228.13 2.09E-12 3.11E+11 24196820 28076080 23540540 7858160 29930820 22735220 26464470 27116490 20409540 24235840 TRUE FALSE FALSE 22500747.87 25851229.17 32656067.53 18294193.61 26176617.46 19930379.71 19842779.69 20942657.18 22178655.36 18167027.92 1.238548648 1.422975144 1.797545954 1.006999807 1.44088607 1.097063306 1.092241383 1.152783894 1.220819138 1 24.11481908 -5.281258486 24.99914193 1.158973146 1.480018502 0.446532721 0.173890158 755.1422209 952508.8142 0.048611579 0.072207796 5.23E-06 5.281258486 0.321045356 LSPS(ph)PTTEDPR ddPTM_HeLa_A485_30min_R1 1 LSPSPTTEDPR 11 0 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 LSPS(0.645)PT(0.178)T(0.177)EDPR 88.803 0.0029662 434870000 258520 329530 233920 251370 276750 261170 274320 294580 268210 318880 TRUE FALSE FALSE 316026.8821 368065.667 320456.7422 265101.7066 249195.7983 274844.4574 215709.291 222333.7931 322037.2868 239389.0846 1.320139064 1.537520675 1.338643919 1.107409334 1.040965584 1.148107725 0.901082401 0.928754933 1.345246327 1 17.86899785 -5.224901886 2.867395223 1.054609684 1.431705692 0.595005423 0.126820073 0.174589292 2.862966297 0.036192283 0.066390329 5.96E-06 5.224901886 0.377096008 LSPS(ph)PTTEDPR ddPTM_HeLa_A486_30min_R1 2 LSPSPTTEDPR 11 0 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 LSPS(0.986)PT(0.011)T(0.003)EDPR;LSPS(0.92)PT(0.063)T(0.017)EDPR ; 147.58 8.03E-07 657520000 946150 965740 783120 229890 879620 842040 769360 824640 805530 999230 TRUE FALSE FALSE 879829.7709 889211.2452 1086365.037 535195.538 769289.8575 738157.666 576857.9905 636887.4738 875353.989 749016.3041 1.174647022 1.187172082 1.450389038 0.714531226 1.027066905 0.985502801 0.770154117 0.850298545 1.168671475 1 19.5146376 -5.259207003 24.99996859 0.9242374 1.262379646 0.545434247 0.142021631 150.7129101 1687796.751 0.038769456 0.063210373 5.51E-06 5.259207003 0.338142246 LSPS(ph)TSGPHSHDYLPQER ddPTM_HeLa_A486_30min_R1 2 LSPSTSGPHSHDYLPQER 18 0 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 0 LS(0.436)PS(0.53)T(0.01)S(0.017)GPHS(0.007)HDYLPQER;LS(0.169)PS(0.274)T(0.274)S(0.274)GPHS(0.01)HDYLPQER ; 81.665 0.0018195 851510000 183917 244020 184523 76341 246010 228730 236060 259350 232387 239513 TRUE FALSE FALSE 171025.368 224682.9665 255975.2473 177725.7061 215153.1318 200511.6182 176995.2912 200301.6666 252530.4923 179537.3858 0.952589163 1.251455041 1.425748994 0.989909178 1.198375095 1.116823759 0.985840862 1.115654356 1.406562155 1 17.45392477 -5.307503172 24.99979599 1.119007989 1.21408497 0.067854014 0.158790359 1214.133713 658933.8806 0.044992418 0.066734984 4.93E-06 5.307503172 0.095076981 LSPSPS(ph)SR ddPTM_HeLa_A486_30min_R1 1 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 0 LSPS(0.291)PS(0.708)S(0.001)R 154.04 0.00015992 8353100000 1309500 1524600 1248000 434670 1764400 1369200 1484000 1541000 1319400 1408400 TRUE FALSE FALSE 1217710.812 1403785.144 1731259.023 1011933.727 1543092.5 1200282.025 1112687.504 1190147.94 1433766.654 1055727.473 1.153432911 1.32968515 1.639873042 0.958517944 1.461639049 1.136924117 1.053953347 1.127324968 1.358084062 1 20.00980603 -6.315724996 22.67277366 1.138133193 1.308751162 0.174655617 0.188389332 213.5219367 89177.6101 0.065093863 0.057407492 4.83E-07 6.315724996 0.170617969 LSPSPTSQR ddPTM_HeLa_A485_30min_R1 2 LSPSPTSQR 9 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 137.84 0.00076726 36568000 11432.5 15810.2 15756.9 13190 18412.6 13705 18802.9 20841.4 14885.7 22808 FALSE FALSE TRUE 13975.62018 17659.06536 21586.03301 13910.5363 16579.37689 14422.57261 14785.50681 15730.01397 17873.12345 17122.38535 0.81621923 1.031343764 1.260690761 0.812418131 0.968286635 0.842322627 0.863519101 0.918681226 1.043845416 1 14.06359608 -4.243636648 23.22374285 0.965288791 0.8162189 0.124365086 0.12248675 3372.374747 4399092.002 0.032024609 0.875163183 5.71E-05 4.243636648 -0.149069891 LSPVIS(ph)PR ddPTM_HeLa_A485_30min_R1 7 LSPVISPR 8 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR ;;;;;; 121.6 0.00070243 2810701000 1364336 1850624 1772031 1564493 2025145 1758073 2061784 2334240 1638199 1782360 TRUE FALSE FALSE 1667827.836 2067038.379 2427579.007 1649957.291 1823514.453 1850122.984 1621267.005 1761763.98 1966970.513 1338050.454 1.246461097 1.54481348 1.814265673 1.233105438 1.36281442 1.382700464 1.211663581 1.316664835 1.470027163 1 20.35170109 -5.311580209 24.99974112 1.30019875 1.536144672 0.302911701 0.174253418 452.7070303 225714.4604 0.048295655 0.071634164 4.88E-06 5.311580209 0.235945922 LSPVIS(ph)PR ddPTM_HeLa_A486_30min_R1 6 LSPVISPR 8 0 Q08499-6;Q08499-7;Q08499-12 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR;LSPVIS(1)PR ;;;;; 139.38 0.00043556 3036810000 2612560 2713600 2268480 951262 3113480 2474190 2797680 2977810 2159760 2598540 TRUE FALSE FALSE 2429433.035 2498564.453 3146896.208 2214586.01 2722958.306 2168949.594 2097670.873 2299827.668 2346969.736 1947848.67 1.247239107 1.282730271 1.615575304 1.136939457 1.397931137 1.113510319 1.076916757 1.180701408 1.204903528 1 20.89345017 -6.269827872 24.57986221 1.124107123 1.337582826 0.432006652 0.126421149 509.4813506 1492871.532 0.043615044 0.039101517 5.37E-07 6.269827872 0.213475703 LSPYPS(ph)SPMR ddPTM_HeLa_A485_30min_R1 1 LSPYPSSPMR 10 0 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 LS(0.003)PY(0.001)PS(0.557)S(0.439)PMR 64.439 0.02141 164180000 209430 269360 247440 264110 319720 246080 324740 288840 240800 402020 TRUE FALSE FALSE 256016.981 300859.3089 338978.3528 278537.6605 287887.5542 258964.3683 255356.6461 218001.5371 289126.3513 301803.8126 0.848289419 0.996870471 1.123174522 0.922909681 0.95388972 0.858055324 0.846101459 0.722328639 0.957994363 1 18.20325151 -6.075763385 2.05763322 0.856538244 0.986452154 0.172051771 0.095266279 0.452062626 3.801870518 0.035624335 0.037103728 8.40E-07 6.075763385 0.12991391 LSPYPSS(ph)PMR ddPTM_HeLa_A485_30min_R1 2 LSPYPSSPMR 10 0 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 LSPYPS(0.001)S(0.999)PMR;LSPYPS(0.002)S(0.998)PMR ; 203.03 7.78E-14 517890000 758150 872120 890260 846760 1065960 803760 999220 857950 833160 1100820 TRUE FALSE FALSE 926797.8519 974106.8476 1219604.221 893016.3547 959829.2796 845843.6308 785728.4841 647536.4173 1000367.57 826405.8331 1.121480288 1.178726975 1.475793335 1.080602676 1.161450272 1.023520886 0.950777999 0.783557414 1.210504004 1 19.65649091 -6.071755467 1.557712151 0.970037956 1.23838596 0.377965792 0.137168208 0.384733051 1.886319539 0.055996772 0.058853981 8.48E-07 6.071755467 0.268348004 LSPYPSS(ph)PMR ddPTM_HeLa_A486_30min_R1 1 LSPYPSSPMR 10 0 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 LSPYPS(0.003)S(0.997)PMR 141.71 4.83E-05 0 361170 395000 345640 168300 478330 393180 420280 457010 334820 385680 TRUE FALSE FALSE 335853.8481 363698.7614 479481.0646 391810.9054 418333.3911 344673.4492 315121.4987 352958.7995 363842.4672 289103.2176 1.161709132 1.258023914 1.658511685 1.355263039 1.447003581 1.192215887 1.089996512 1.220874684 1.258520988 1 18.14122514 -6.348959057 5.556524697 1.159045033 1.383661561 0.39787052 0.137715201 0.259240333 12.82552316 0.051032987 0.044896565 4.48E-07 6.348959057 0.224616528 LSQSSQDSS(ph)PVR ddPTM_HeLa_A485_30min_R1 9 LSQSSQDSSPVR 12 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 LSQSSQDS(0.001)S(0.999)PVR;LSQSSQDSS(1)PVR;LSQSSQDS(0.007)S(0.993)PVR;LSQSSQDSS(1)PVR;LSQSSQDS(0.037)S(0.963)PVR;LSQSSQDS(0.002)S(0.998)PVR;LSQSSQDS(0.053)S(0.947)PVR;LSQSSQDS(0.009)S(0.991)PVR;LSQSSQDS(0.047)S(0.953)PVR ;;;;;;;; 286.08 2.69E-41 17717417000 10490452 14350010 13799610 11401520 16898780 13617760 15396190 16347530 13157740 16043240 TRUE FALSE FALSE 12824016.86 16028118.84 18904659.99 12024356.17 15216278.13 14330764.86 12106668.23 12338272.64 15798377.73 12043955.52 1.064767869 1.330801896 1.569638808 0.998372681 1.26339541 1.189871951 1.005206986 1.024436915 1.311726675 1 23.52180595 -5.286633874 24.99869915 1.119247637 1.322642872 0.273911667 0.15531027 1011.59371 1003729.971 0.04402213 0.065322618 5.17E-06 5.286633874 0.203395235 LSQSSQDSS(ph)PVR ddPTM_HeLa_A486_30min_R1 6 LSQSSQDSSPVR 12 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 LSQSSQDS(0.003)S(0.997)PVR;LSQSSQDSS(1)PVR;LSQSSQDS(0.003)S(0.997)PVR;LSQSSQDSS(1)PVR;LSQSSQDS(0.044)S(0.956)PVR;LSQSSQDS(0.057)S(0.942)PVR ;;;;; 296.1 8.57E-50 16888460000 12648620 14571160 12353290 4358770 15468610 12574240 13948630 14430720 12113570 13283090 TRUE FALSE FALSE 11762017.06 13416488.21 17136814.72 10147436.84 13528392.69 11022958.11 10458535.24 11145160.08 13163584 9956917.806 1.181290966 1.347453949 1.721096333 1.019134338 1.358692816 1.107065292 1.050378786 1.119338363 1.322054099 1 23.24726779 -5.29136201 24.99629345 1.148561101 1.409697986 0.365795491 0.166824944 756.8698512 632260.2837 0.046834713 0.069476947 5.11E-06 5.29136201 0.261136886 LSQT(ph)PHSQPPRPGTCK ddPTM_HeLa_A486_30min_R1 1 LSQTPHSQPPRPGTCK 16 1 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 LS(0.15)QT(0.85)PHSQPPRPGTCK 100.02 0.00057435 256540000 343390 341490 299600 64042 400080 354860 411530 379620 291630 337290 TRUE FALSE FALSE 319320.1343 314429.0887 415613.1436 149093.0125 349898.2358 311080.9812 308560.8413 293188.813 316908.7232 252830.3886 1.262981622 1.243636457 1.643841731 0.589695777 1.383924764 1.230393952 1.220426243 1.159626478 1.253443959 1 17.94781035 -14 0.145772961 0.279114279 1.286716427 0.068423682 0.247014706 426.6073023 3.738642493 90.3436638 1.333520177 1.00E-14 14 1.007602148 LSQVNES(ph)DADDEDNYGAR ddPTM_HeLa_A485_30min_R1 1 LSQVNESDADDEDNYGAR 18 0 Q6V0I7-2;Q6V0I7-3;Q6V0I7 Q6V0I7-2 FAT4 Protocadherin Fat 4 1 0 LSQVNES(1)DADDEDNYGAR 374.84 8.79E-130 514960000 158940 192370 133080 172670 153780 178960 189150 197780 153550 308990 TRUE FALSE FALSE 194295.6547 214865.9981 182311.8299 182102.5249 138469.1232 188330.0689 148736.5573 149274.1449 184366.0766 231964.4795 0.837609513 0.926288363 0.785947186 0.785044871 0.596941064 0.811891843 0.641204022 0.643521565 0.794803053 1 17.82354438 -5.059250932 2.376391791 0.728642231 0.880684318 0.142016296 0.111831392 0.428153897 4.743975886 0.030294183 0.068974762 8.72E-06 5.059250932 0.152042088 LSQYLDSSQVKPLFQFFVPDALNDRHPDVR ddPTM_HeLa_A485_30min_R1 1 LSQYLDSSQVKPLFQFFVPDALNDRHPDVR 30 2 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 166.2 2.26E-26 24757000 8054.9 8667.9 6910.9 6763.1 10418 8537 9873.5 14239 6588.8 9035.9 FALSE FALSE TRUE 9846.684716 9681.535504 9467.529497 7132.551028 9380.74734 8983.984119 7763.946066 10746.86292 7911.111724 6783.416423 1.451581932 1.427235909 1.395687498 1.051468844 1.382894217 1.32440404 1.144548054 1.58428471 1.166242971 1 12.72779635 -12.8457097 0.248894712 4.52E-20 1.358862398 0.309568667 0.150925615 125.3180156 2.102245872 64.11069301 0.225172257 1.43E-13 12.8457097 1.358862398 LSQYLDSSQVKPLFQFFVPDALNDRHPDVR ddPTM_HeLa_A486_30min_R1 2 LSQYLDSSQVKPLFQFFVPDALNDRHPDVR 30 2 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 182.09 2.51E-33 36668800 17030.77 22804.8 17829.89 5652.65 23740.6 19316.3 23466.5 24972.8 19237.53 23762.4 FALSE FALSE TRUE 15837.00097 20997.66459 24734.10091 13159.65487 20762.83258 16933.2513 17594.9335 19287.03859 20905.05459 17812.14037 0.889112742 1.178840058 1.388609139 0.738802558 1.16565624 0.950657863 0.987805684 1.082802975 1.173640795 1 14.12057327 -5.248583844 24.99112001 1.020209199 1.154852533 0.132533164 0.161224936 1682.017403 3269830.388 0.043185665 0.074181546 5.64E-06 5.248583844 0.134643334 LSRGDS(ph)LKEPTSIAESSR ddPTM_HeLa_A485_30min_R1 2 LSRGDSLKEPTSIAESSR 18 2 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 LS(0.002)RGDS(0.994)LKEPT(0.002)S(0.002)IAESSR;LS(0.058)RGDS(0.865)LKEPT(0.014)S(0.016)IAES(0.024)S(0.024)R ; 62.611 0.01257 540950000 333320 285120 146599 505910 279520 372080 660130 626020 287940 1022110 TRUE FALSE FALSE 407465.8841 318462.3038 200832.0706 533546.5823 251690.0073 391561.5335 519087.8327 472487.6134 345726.9169 767316.7875 0.531026938 0.415033672 0.261732929 0.695340687 0.328013164 0.510299709 0.676497427 0.615766032 0.45056608 1 19.54946279 -14 0.175918108 3.030914179 0.387992479 0.583435916 0.130102698 92.69710734 0.885094016 65.56161629 0.426895644 1.00E-14 14 -2.6429217 LSRGDS(ph)LKEPTSIAESSR ddPTM_HeLa_A486_30min_R1 1 LSRGDSLKEPTSIAESSR 18 2 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 LS(0.019)RGDS(0.981)LKEPTSIAESSR 139.47 6.90E-07 574300000 344940 313580 184000 186110 363450 415490 547900 471200 293750 696690 TRUE FALSE FALSE 320761.4873 288730.7788 255249.7277 433273.4855 317862.712 364231.0682 410809.6249 363918.0462 319212.4865 522234.2893 0.614209932 0.55287595 0.48876478 0.829653461 0.608659214 0.697447632 0.786638552 0.696848242 0.611243829 1 18.99433766 -14 0.125343711 2.091913034 0.507548554 0.56439281 0.094010222 113.5962262 0.908615723 31.53150093 0.817277197 1.00E-14 14 -1.584364481 LSS(ph)EDEEEDEAEDDQSEASGKK ddPTM_HeLa_A485_30min_R1 1 LSSEDEEEDEAEDDQSEASGKK 22 1 Q8NEJ9-2;Q8NEJ9;G3V4G1 Q8NEJ9-2 NGDN Neuroguidin 1 0 LS(0.153)S(0.847)EDEEEDEAEDDQSEASGKK 178.46 1.36E-19 131960000 49555 22384 15687 67442 48844 35508 75809 64011 18432 91369 TRUE FALSE FALSE 60578.33879 25001.61409 21490.27409 71126.18569 43980.91986 37367.14397 59611.78785 48312.20188 22131.13333 68592.38982 0.883164137 0.364495451 0.313304058 1.036939898 0.641192412 0.544770988 0.86907291 0.704337639 0.322647066 1 16.0657609 -5.235358677 24.96050868 0.713177448 0.504738698 0.131545166 0.244345803 1573.665573 1506073.035 0.065216502 0.112910817 5.82E-06 5.235358677 -0.20843875 LSS(ph)EDEEEDEAEDDQSEASGKK ddPTM_HeLa_A486_30min_R1 1 LSSEDEEEDEAEDDQSEASGKK 22 1 Q8NEJ9-2;Q8NEJ9;G3V4G1 Q8NEJ9-2 NGDN Neuroguidin 1 0 LS(0.165)S(0.835)EDEEEDEAEDDQSEASGKK 132.36 8.73E-07 143680000 61411 51212 16720 37066 53225 63593 101950 81898 41909 102460 TRUE FALSE FALSE 57106.40603 47153.77461 23194.43178 86291.52121 46549.0242 55747.54223 76441.03168 63251.61322 45541.70586 76803.3491 0.743540571 0.613954667 0.301997661 1.12353852 0.606080656 0.725847803 0.995282531 0.8235528 0.592965104 1 16.2288816 -5.255688273 24.99990146 0.823023584 0.559243363 0.316987137 0.19075424 618.2325222 2687433.028 0.051534695 0.086228381 5.55E-06 5.255688273 -0.263780221 LSS(ph)GFDDIDLPSAVK ddPTM_HeLa_A485_30min_R1 1 LSSGFDDIDLPSAVK 15 0 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 LS(0.246)S(0.754)GFDDIDLPSAVK 114.69 0.00016329 75363000 84992 83908 67363 127400 125780 121830 230070 254220 160560 242350 TRUE FALSE FALSE 103898.1772 93720.3107 92283.37691 134359.5394 113256.9016 128208.8304 180913.665 191872.1464 192782.9193 181936.6051 0.571068022 0.515126193 0.507228201 0.738496463 0.622507502 0.704689583 0.994377491 1.054609908 1.059615898 1 17.47307631 -6.675085884 1.832339809 1.052833439 0.58372148 0.914831885 0.063151426 0.098720423 0.678035919 0.034272736 0.023014863 2.11E-07 6.675085884 -0.469111959 LSS(ph)GFDDIDLPSAVK ddPTM_HeLa_A486_30min_R1 2 LSSGFDDIDLPSAVK 15 0 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 LS(0.104)S(0.896)GFDDIDLPSAVK;LS(0.013)S(0.987)GFDDIDLPSAVK ; 322.35 1.98E-78 200410000 302240 307680 148022 127771 253360 425370 567480 607430 284410 535270 TRUE FALSE FALSE 281054.5368 283298.3162 205340.0826 297457.3452 221581.2263 372892.1742 425490.5018 469131.4491 309062.8878 401234.908 0.70047379 0.706065974 0.511770234 0.741354601 0.552248127 0.929361247 1.060452352 1.169218928 0.77027916 1 18.6140876 -6.389553357 4.541245118 1.011763143 0.645105491 0.696572505 0.113746917 0.125283016 4.073333461 0.040036691 0.034906252 4.08E-07 6.389553357 -0.366657652 LSS(ph)LPR ddPTM_HeLa_A485_30min_R1 8 LSSLPR 6 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ES05 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 LS(0.225)S(0.775)LPR;LS(0.026)S(0.974)LPR;LS(0.034)S(0.966)LPR;LS(0.025)S(0.975)LPR;LS(0.242)S(0.758)LPR;LS(0.452)S(0.548)LPR;LS(0.148)S(0.852)LPR;LS(0.245)S(0.755)LPR ;;;;;;; 110.03 0.0090471 2238218000 2911616 3216115 3185314 2860998 4034520 3358950 4180610 4257120 3177198 3993810 TRUE FALSE FALSE 3559294.934 3592211.673 4363694.201 3017287.076 3632829.023 3534819.428 3287388.521 3213054.645 3814832.496 2998226.668 1.187133372 1.198112108 1.455425051 1.006357227 1.211659232 1.178970045 1.096444294 1.07165168 1.272362939 1 21.51567803 -13.99999462 0.051872324 0.275854116 1.533926855 0.210810221 0.114305612 798.281679 3.048962952 78.72156654 16.62562091 1.00E-14 13.99999462 1.258072738 LSS(ph)LPR ddPTM_HeLa_A486_30min_R1 4 LSSLPR 6 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ES05 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 LS(0.015)S(0.985)LPR;LS(0.257)S(0.743)LPR;LS(0.046)S(0.954)LPR;LS(0.009)S(0.991)LPR ;;; 113.5 0.0081482 1518560000 2470260 2544090 2005700 828790 2992960 2374210 2876750 2991850 2306130 2909420 TRUE FALSE FALSE 2297107.53 2342487.043 2782360.755 1929465.005 2617555.049 2081304.109 2156956.723 2310671.067 2506027.205 2180882.295 1.053292759 1.074100628 1.27579593 0.884717625 1.200227566 0.954340413 0.989029407 1.059512048 1.149088702 1 21.05648048 -5.259153982 24.99994577 1.038077367 1.128366843 0.168282929 0.10187179 409.4925701 4479389.258 0.027276501 0.044553895 5.51E-06 5.259153982 0.090289476 LSS(ph)LRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 4 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.438)S(0.562)LRAS(0.964)T(0.031)S(0.005)K;LS(0.447)S(0.553)LRAS(0.784)T(0.208)S(0.008)K;LS(0.436)S(0.564)LRAS(0.733)T(0.225)S(0.042)K;LS(0.428)S(0.572)LRAS(0.935)T(0.05)S(0.015)K ;;; 113.59 0.00063528 24079600000 20564600 15685700 11256400 27197700 16524600 15217800 23504000 19511100 11140500 28769200 TRUE FALSE FALSE 25139124.32 17520006.17 15420610.78 28683441.48 14879352.8 16014580.48 18482178.39 14725972.13 13376296.16 21597567.9 1.163979409 0.811202736 0.71399756 1.328086645 0.688936498 0.741499254 0.855752762 0.681834742 0.619342707 1 24.36436552 LSS(ph)LRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 5 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.435)S(0.565)LRAS(0.828)T(0.148)S(0.024)K;LS(0.442)S(0.558)LRAS(0.976)T(0.021)S(0.003)K;LS(0.416)S(0.584)LRAS(0.963)T(0.023)S(0.014)K;LS(0.435)S(0.565)LRAS(0.705)T(0.129)S(0.166)K;LS(0.426)S(0.574)LRAS(0.941)T(0.049)S(0.01)K ;;;; 109.55 0.00084805 46403400000 30446800 33398800 16350900 14113950 24546000 33372200 41645000 34498200 23214100 39217200 TRUE FALSE FALSE 28312636.55 30752157.45 22682406.37 32857988.88 21467211.8 29255077.27 31224980.52 26643712.95 25226316.88 29396957.86 0.963114506 1.046099994 0.771590261 1.117734326 0.730252834 0.99517363 1.062184076 0.906342523 0.858126783 1 24.80916353 LSS(ph)LRAS(ph)TSKSESSQK ddPTM_HeLa_A485_30min_R1 2 LSSLRASTSKSESSQK 16 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.438)S(0.562)LRAS(0.561)T(0.437)S(0.002)KSESSQK;LS(0.093)S(0.907)LRAS(0.986)T(0.014)S(0.001)KSESSQK ; 154.65 1.80E-08 3400100000 1180440 951940 912590 2442420 3466400 1891510 4376500 5512900 1321320 3654500 TRUE FALSE FALSE 1443024.806 1063261.102 1250195.017 2575843.22 3121273.045 1990546.539 3441425.022 4160852.631 1586496.804 2743500.406 0.525979439 0.387556386 0.455693396 0.938889316 1.137697315 0.725549934 1.254392022 1.516621839 0.578274674 1 21.38758636 -5.318450871 3.607181669 1.055438086 0.442239961 0.524973493 0.247034734 0.179591216 4.721768201 0.071320924 0.114576271 4.80E-06 5.318450871 -0.613198126 LSS(ph)LRAS(ph)TSKSESSQK ddPTM_HeLa_A486_30min_R1 4 LSSLRASTSKSESSQK 16 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.036)S(0.964)LRAS(0.935)T(0.056)S(0.008)KSESSQK;LS(0.424)S(0.576)LRAS(0.877)T(0.106)S(0.011)KS(0.006)ESSQK;LS(0.443)S(0.557)LRAS(0.989)T(0.009)S(0.001)KSESSQK;LS(0.07)S(0.93)LRAS(0.921)T(0.07)S(0.009)KSESSQK ;;; 179.19 4.97E-17 5719920000 4912900 4346300 3091330 6108000 9705600 7207100 12646200 13700000 3369640 7125400 TRUE FALSE FALSE 4568531.08 4001883.359 4288375.765 14219732.68 8488233.147 6317961.278 9481987.002 10580809.07 3661723.108 5341153.461 0.855345407 0.749254517 0.802893194 2.662296222 1.589213493 1.182883309 1.775269531 1.980997016 0.685567852 1 22.34871991 -5.080667657 24.9999999 1.600856451 0.795640045 0.303744938 0.517775674 109.2349017 33852.26239 0.137660611 0.238435298 8.30E-06 5.080667657 -0.805216406 LSS(ph)LRAST(ph)SK ddPTM_HeLa_A486_30min_R1 1 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 LS(0.458)S(0.542)LRAS(0.421)T(0.498)S(0.082)K 62.377 0.022012 20650000000 828730 969020 424380 411540 744710 1168500 648370 1067600 381340 1238600 TRUE FALSE FALSE 770640.3066 892231.3261 588711.3013 958085.9181 651301.5277 1024342.35 486140.9682 824530.7855 414394.8582 928446.4981 0.830032003 0.960993798 0.634082096 1.03192367 0.701496025 1.103286353 0.523606874 0.888075713 0.446331435 1 19.82445925 -6.773088579 24.9999742 0.705176575 0.868815367 0.136797035 0.19875083 438.6513577 941366.7694 0.075589777 0.051439676 1.69E-07 6.773088579 0.163638793 LSS(ph)PER ddPTM_HeLa_A485_30min_R1 2 LSSPER 6 0 M0QXB4;O14579-3;O14579;M0R061;O14579-2;Q8TDZ2-3;Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4 M0QXB4;Q8TDZ2-2 COPE;MICAL1 Coatomer subunit epsilon;Protein-methionine sulfoxide oxidase MICAL1 1 0 LS(0.445)S(0.555)PER;LS(0.05)S(0.95)PER ; 97.068 0.013215 4044320000 619210 1009300 893100 640680 996700 883130 905530 1027000 802630 869820 TRUE FALSE FALSE 756951.1283 1127328.855 1223494.855 675678.7261 897465.0484 929369.3212 712056.118 775126.6397 963710.4788 652989.8819 1.159208051 1.726410909 1.873681184 1.034746089 1.374393499 1.423252254 1.090455056 1.187042344 1.475842897 1 19.31670111 -5.267828323 24.99488726 1.243014153 1.600431135 0.342235121 0.227598006 569.6001269 2228395.565 0.063374044 0.096645718 5.40E-06 5.267828323 0.357416982 LSS(ph)PER ddPTM_HeLa_A486_30min_R1 3 LSSPER 6 0 M0QXB4;O14579-3;O14579;M0R061;O14579-2;Q8TDZ2-3;Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4 M0QXB4;Q8TDZ2-2 COPE;MICAL1 Coatomer subunit epsilon;Protein-methionine sulfoxide oxidase MICAL1 1 0 LS(0.249)S(0.751)PER;LS(0.089)S(0.911)PER;LS(0.082)S(0.918)PER ;; 96.111 0.013569 4533320000 3083810 3062360 2737800 1097180 3445600 3129670 3351610 3258490 2913410 3406220 TRUE FALSE FALSE 2867650.844 2819687.441 3797949.481 2554290.488 3013420.719 2743563.136 2513001.728 2516602.959 3165946.725 2553280.341 1.123124162 1.10433915 1.487478449 1.000395627 1.180215376 1.074524834 0.984224759 0.985635192 1.23995265 1 21.28392052 LSS(ph)PGPSR ddPTM_HeLa_A485_30min_R1 2 LSSPGPSR 8 0 H0YBI6;H0YBQ0;Q86VQ6 H0YBI6 TXNRD3 Thioredoxin reductase 3 1 0 LS(0.041)S(0.959)PGPSR;LS(0.072)S(0.928)PGPSR ; 139.02 0.00010518 351740000 1498030 1713830 1608610 2062620 1887130 1800940 1901920 2063900 1638310 2541800 TRUE FALSE FALSE 1831261.605 1914247.51 2203701.779 2175295.708 1699240.711 1895234.434 1495559.255 1557725.289 1967103.79 1908176.038 0.959692171 1.00318182 1.154873416 1.139986911 0.890505214 0.993217814 0.783763775 0.816342548 1.030881716 1 20.86376284 -5.774449082 24.98430448 0.906872837 1.066518443 0.372707777 0.091516895 234.927741 451162.2044 0.029605229 0.033776487 1.68E-06 5.774449082 0.159645605 LSS(ph)PGPSR ddPTM_HeLa_A486_30min_R1 2 LSSPGPSR 8 0 H0YBI6;H0YBQ0;Q86VQ6 H0YBI6 TXNRD3 Thioredoxin reductase 3 1 0 LS(0.011)S(0.989)PGPSR;LS(0.062)S(0.938)PGPSR ; 144.47 0.00034943 831170000 2273600 2614600 2032930 881960 2679300 2751800 2572100 2634200 2408100 2720500 TRUE FALSE FALSE 2114232.381 2407409.574 2820134.94 2053247.452 2343237.211 2412310.894 1928533.375 2034450.164 2616836.047 2039269.093 1.036759881 1.1805257 1.38291457 1.006854593 1.149057385 1.18292917 0.94569833 0.997636934 1.283222531 1 20.95962073 -6.027965283 1.222254277 1.068807279 1.177683386 0.082576535 0.129783921 1.126602022 3.512904265 0.059905295 0.066703305 9.38E-07 6.027965283 0.108876106 LSS(ph)PISK ddPTM_HeLa_A485_30min_R1 4 LSSPISK 7 0 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 LSS(1)PISK;LS(0.001)S(0.999)PISK;LSS(0.999)PISK;LS(0.012)S(0.988)PISK ;;; 121.35 0.0019444 1151100000 5304100 3890760 3499810 7660600 5924300 4732200 6439600 5203200 4428220 9532000 TRUE FALSE FALSE 6483978.746 4345750.537 4794535.358 8079079.18 5334455.891 4979970.675 5063726.853 3927107.042 5316923.136 7155847.823 0.906109088 0.60730058 0.670016394 1.129017746 0.745468045 0.695930209 0.707634787 0.548796892 0.743017916 1 22.77069128 -5.987447764 24.99963082 0.710220455 0.818070834 0.047411453 0.167958106 639.1989119 1273051.513 0.052715164 0.05973775 1.03E-06 5.987447764 0.107850378 LSS(ph)PISK ddPTM_HeLa_A486_30min_R1 4 LSSPISK 7 0 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 LS(0.002)S(0.998)PISK;LS(0.001)S(0.999)PISK;LS(0.001)S(0.999)PISK;LSS(1)PISK ;;; 134.77 0.0016072 1604110000 5435330 5912300 3059040 2203590 4969330 5960750 6808000 6305900 4668190 6693700 TRUE FALSE FALSE 5054341.435 5443787.816 4243582.212 5130068.883 4346030.294 5225373.269 5104566.392 4870184.227 5072832.468 5017553.951 1.007331756 1.084948536 0.845747201 1.02242426 0.866165135 1.041418452 1.017341605 0.97062917 1.011017025 1 22.25855279 LSS(ph)PISKR ddPTM_HeLa_A485_30min_R1 3 LSSPISKR 8 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 LS(0.12)S(0.88)PISKR;LS(0.206)S(0.794)PISKR;LS(0.03)S(0.97)PISKR ;; 134.23 0.00029371 971850000 900440 1218460 756170 949860 1353900 1346200 1716140 2259100 883190 1227320 TRUE FALSE FALSE 1100739.772 1360948.298 1035908.75 1001748.447 1219100.962 1416684.95 1349472.669 1705052.183 1060438.132 921371.7112 1.194675024 1.477089302 1.124311434 1.087235949 1.323136957 1.537582425 1.464634363 1.850558425 1.150934112 1 19.81342378 -6.022185463 7.518610172 1.455351965 1.228735587 0.092488564 0.235975095 0.349951448 91.0123612 0.074361548 0.077268639 9.50E-07 6.022185463 -0.226616378 LSS(ph)PISKR ddPTM_HeLa_A486_30min_R1 1 LSSPISKR 8 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 LS(0.182)S(0.818)PISKR 121.5 0.0004149 104360000 297990 271580 162610 131140 346000 256620 344680 340390 194490 360560 TRUE FALSE FALSE 277102.4398 250059.0117 225576.9468 305300.5474 302601.4537 224960.8335 258437.4183 262890.6277 211348.5498 270273.4291 1.025267044 0.92520753 0.834624948 1.129598823 1.119612293 0.832345356 0.956207272 0.972683954 0.781980495 1 18.04406016 -6.2793853 24.91556443 0.909908914 0.99957575 0.190536365 0.100646242 1629.240649 2261980.47 0.037269217 0.032941509 5.26E-07 6.2793853 0.089666836 LSS(ph)PVK ddPTM_HeLa_A485_30min_R1 6 LSSPVK 6 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 LS(0.016)S(0.984)PVK;LS(0.104)S(0.896)PVK;LS(0.008)S(0.992)PVK;LS(0.125)S(0.875)PVK;LS(0.014)S(0.986)PVK;LS(0.007)S(0.993)PVK ;;;;; 143.89 0.0044265 4238400000 12626500 8541650 7262770 20588700 12479000 8682320 13925000 10395400 10561000 29113200 TRUE FALSE FALSE 15435221.36 9540521.665 9949570.852 21713408.55 11236546.94 9136912.85 10949809.99 7845911.851 12680495.83 21855815.03 0.706229502 0.436520974 0.45523678 0.993484275 0.514121616 0.418054089 0.501002135 0.358985096 0.580188651 1 24.38151384 -8.046497781 22.89692319 1.000000002 0.544015543 0.376860861 0.173383568 4883.471129 2404766.386 0.173057492 0.044683252 8.98E-09 8.046497781 -0.455984459 LSS(ph)PVK ddPTM_HeLa_A486_30min_R1 6 LSSPVK 6 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 LS(0.048)S(0.952)PVK;LS(0.048)S(0.952)PVK;LS(0.001)S(0.999)PVK;LS(0.001)S(0.999)PVK;LS(0.012)S(0.988)PVK;LS(0.015)S(0.985)PVK ;;;;; 150.88 0.0030652 5245400000 13828900 13505300 7099050 5769690 10770300 15906100 17166900 14805800 11932800 17091700 TRUE FALSE FALSE 12859565.52 12435090.84 9847992.279 13432129.9 9419388.545 13943767.1 12871560.05 11434842.55 12967144.71 12811827.07 1.003726124 0.970594652 0.768664159 1.048416422 0.735210403 1.088351179 1.004662331 0.892522392 1.012122989 1 23.61097289 LSS(ph)PVKRPR ddPTM_HeLa_A486_30min_R1 2 LSSPVKRPR 9 2 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 LS(0.009)S(0.991)PVKRPR;LS(0.159)S(0.841)PVKRPR ; 71.524 0.0098458 12199500000 1951600 1624060 921140 677854 1623640 1528570 2052750 1926840 1232480 2017550 TRUE FALSE FALSE 1814802.918 1495363.571 1277830.077 1578078.369 1419987.931 1339990.575 1539130.238 1488140.595 1339312.359 1512342.348 1.199994777 0.988773192 0.844934402 1.043466363 0.938932864 0.886036536 1.017712848 0.983997173 0.885588082 1 20.52835333 -4.283168103 4.116374019 0.950741828 1.21615826 0.601966441 0.060514265 0.132511909 4.844274914 0.014708751 0.099916571 5.21E-05 4.283168103 0.265416432 LSS(ph)PVLHR ddPTM_HeLa_A485_30min_R1 10 LSSPVLHR 8 0 Q16643;Q16643-2;D6RCR4;D6R9W4;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 LS(0.289)S(0.711)PVLHR;LS(0.12)S(0.88)PVLHR;LS(0.083)S(0.917)PVLHR;LS(0.001)S(0.999)PVLHR;LS(0.002)S(0.998)PVLHR;LS(0.12)S(0.88)PVLHR;LS(0.006)S(0.994)PVLHR;LS(0.026)S(0.974)PVLHR;LS(0.182)S(0.818)PVLHR;LS(0.138)S(0.862)PVLHR ;;;;;;;;; 153.97 0.00011778 57174440000 4044750 5049859 4847125 4161075 5721616 5071260 6322542 6470548 4577742 5938372 TRUE FALSE FALSE 4944490.683 5640396.082 6640278.243 4388383.991 5151951.821 5336783.332 4971679.251 4883635.958 5496452.83 4458045.148 1.109116332 1.265217353 1.489504485 0.984374057 1.15565268 1.197112895 1.115215097 1.095465792 1.232928929 1 22.0879798 -14 0.063344872 0.332848343 1.449965611 0.173164675 0.125788107 634.8456597 2.917902904 64.12208677 9.674546052 1.00E-14 14 1.117117268 LSS(ph)PVLHR ddPTM_HeLa_A486_30min_R1 8 LSSPVLHR 8 0 Q16643;Q16643-2;D6RCR4;D6R9W4;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 LS(0.084)S(0.916)PVLHR;LS(0.132)S(0.868)PVLHR;LS(0.286)S(0.714)PVLHR;LS(0.002)S(0.998)PVLHR;LS(0.007)S(0.993)PVLHR;LS(0.375)S(0.625)PVLHR;LS(0.363)S(0.637)PVLHR;LS(0.001)S(0.999)PVLHR ;;;;;;; 174.48 1.60E-05 54925100000 1813996 2136689 1790264 553072.8 2380237 1921094 2042058 2176192 1780357 1946376 TRUE FALSE FALSE 1686844.248 1967369.982 2483502.166 1287581.429 2081685.481 1684088.955 1531113.49 1680720.588 1934679.778 1458990.781 1.156171972 1.348445794 1.702205523 0.882515124 1.426798242 1.154283479 1.049433286 1.151974783 1.326039755 1 20.47653934 -5.265997639 24.98636622 1.156484338 1.396891557 0.278022088 0.191405288 531.4314705 2913076.447 0.052601439 0.081085866 5.42E-06 5.265997639 0.240407219 LSS(ph)SKENLDASK ddPTM_HeLa_A485_30min_R1 1 LSSSKENLDASK 12 1 K7EN13;K7EQL6;Q8NFA0 K7EN13 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 LS(0.075)S(0.534)S(0.391)KENLDASK 101.75 0.00043126 281930000 389990 172250 147550 998620 365140 274900 489590 330190 258000 1273000 TRUE FALSE FALSE 476741.9301 192393.1391 202134.8851 1053172.082 328785.3795 289293.3389 384985.0969 249210.3848 309778.2335 955664.5278 0.498859083 0.201318699 0.211512387 1.102031153 0.344038488 0.302714321 0.40284544 0.260771827 0.324149557 1 19.86614474 -10.14861455 3.937012254 1.000263586 0.404998682 0.340963314 0.248013581 763838915.4 1511520206 2616248.709 0.063457705 7.10E-11 10.14861455 -0.595264904 LSS(ph)SKENLDASK ddPTM_HeLa_A486_30min_R1 2 LSSSKENLDASK 12 1 K7EN13;K7EQL6;Q8NFA0 K7EN13 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 LSS(0.5)S(0.5)KENLDASK;LS(0.001)S(0.499)S(0.499)KENLDASK ; 155.26 3.01E-08 624750000 924960 1052050 361670 777960 750730 1448260 1734180 1466330 801040 2145090 TRUE FALSE FALSE 860125.0805 968681.7265 501718.3099 1811130.196 656566.4431 1269588.406 1300269.822 1132478.669 870474.7922 1607945.502 0.534921787 0.602434427 0.312024449 1.126362923 0.408326304 0.789571789 0.808652918 0.704301649 0.541358393 1 20.61678708 -13.99999989 0.048017953 2.24260569 8.91E-09 0.200529689 0.216484624 1012.988376 3.596867532 169.4738106 40.10382583 1.00E-14 13.99999989 -2.242605681 LSS(ph)TDDGYIDLQFK ddPTM_HeLa_A485_30min_R1 1 LSSTDDGYIDLQFK 14 0 Q5JWB9;A0A087WTT2;Q96A57;Q96A57-2 Q5JWB9 TMEM230 Transmembrane protein 230 1 0 LS(0.012)S(0.975)T(0.012)DDGYIDLQFK 163.27 7.14E-12 79738000 277720 199190 128880 336690 216540 227330 330770 311130 211740 608770 TRUE FALSE FALSE 339497.8559 222483.5378 176558.0751 355082.5222 194980.5173 239232.6473 260098.2874 234824.8797 254234.2758 457014.8426 0.742859584 0.486819064 0.386328974 0.776960591 0.426639354 0.523468004 0.569124377 0.513823311 0.556293258 1 18.8018815 -10.24691866 2.417626599 1.006814574 0.547944374 0.566022277 0.117171981 396893.1694 416431.3286 20024.63447 0.029255657 5.66E-11 10.24691866 -0.4588702 LSS(ph)TDDGYIDLQFK ddPTM_HeLa_A486_30min_R1 2 LSSTDDGYIDLQFK 14 0 Q5JWB9;A0A087WTT2;Q96A57;Q96A57-2 Q5JWB9 TMEM230 Transmembrane protein 230 1 0 LS(0.139)S(0.845)T(0.016)DDGYIDLQFK;LS(0.098)S(0.804)T(0.098)DDGYIDLQFK ; 189.1 1.23E-17 102126000 261330 250150 137482 109855 255050 321900 353430 334360 234510 389290 TRUE FALSE FALSE 243012.1165 230327.203 190718.7123 255747.9918 223059.2508 282187.2508 264998.0758 258233.527 254837.5156 291809.2501 0.83277729 0.789307408 0.653573224 0.876421812 0.764400891 0.967026407 0.908120889 0.884939483 0.873301705 1 18.15466609 -6.253238079 24.84784289 0.918326615 0.781596901 0.556654248 0.063753219 459.6415292 1392596.761 0.021176945 0.020824529 5.58E-07 6.253238079 -0.136729714 LSSAGLIYLHFGHK ddPTM_HeLa_A485_30min_R1 2 LSSAGLIYLHFGHK 14 0 F8VQQ3;Q9HB07 F8VQQ3 C12orf10 "UPF0160 protein MYG1, mitochondrial" 0 0 ; ; 172.09 2.99E-08 90126000 220054 217610 198772 240750 265020 227560 377210 405350 117021 347490 FALSE FALSE TRUE 269004.2531 243057.5965 272306.0344 253901.5629 238633.6783 239474.6897 296616.002 305937.2769 140506.0413 260867.1381 1.031192565 0.931729456 1.043849511 0.97329838 0.914770944 0.917994852 1.137038587 1.172770473 0.538611503 1 17.99295569 -7.751411767 24.99976709 0.769305664 1.00955385 0.354684972 0.132557266 194.8688474 485834.302 0.089056953 0.032786406 1.77E-08 7.751411767 0.240248186 LSSAGLIYLHFGHK ddPTM_HeLa_A486_30min_R1 2 LSSAGLIYLHFGHK 14 0 F8VQQ3;Q9HB07 F8VQQ3 C12orf10 "UPF0160 protein MYG1, mitochondrial" 0 0 ; ; 159.08 1.73E-07 77597000 186034 221848 183783 139958 262120 231780 326010 269640 211811 336700 FALSE FALSE TRUE 172993.9773 204267.9565 254948.6995 325829.2971 229242.4654 203185.3402 244438.8498 208248.8582 230170.948 252388.1285 0.685428345 0.809340589 1.01014537 1.290985036 0.908293377 0.805051099 0.968503754 0.825113524 0.911972165 1 17.94528453 -4.55876124 3.873941433 0.962090376 0.704801743 0.337448533 0.127191983 0.259128843 8.153163833 0.036191841 0.12453299 2.76E-05 4.55876124 -0.257288634 LSSAGPRS(ph)PYCK ddPTM_HeLa_A485_30min_R1 2 LSSAGPRSPYCK 12 1 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 LSS(0.001)AGPRS(0.999)PYCK;LSSAGPRS(1)PYCK ; 110.57 0.0002009 1698780000 1031780 1209100 1140140 1506420 2051100 1377510 2095220 2130720 1369080 2148140 TRUE FALSE FALSE 1261295.901 1350493.727 1561925.231 1588711.91 1846885.282 1449634.294 1647559.131 1608157.579 1643841.798 1612648.232 0.78212711 0.837438507 0.968546767 0.985157134 1.145249935 0.898915377 1.02164818 0.997215355 1.019343069 1 20.62100035 -4.735438327 2.129785218 1.010677941 0.781245138 0.667431238 0.056330429 0.196409836 1.682469535 0.015422091 0.059748179 1.84E-05 4.735438327 -0.229432803 LSSAGPRS(ph)PYCK ddPTM_HeLa_A486_30min_R1 6 LSSAGPRSPYCK 12 1 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 LS(0.001)S(0.027)AGPRS(0.971)PY(0.001)CK;LSSAGPRS(0.999)PY(0.001)CK;LS(0.002)S(0.002)AGPRS(0.934)PY(0.062)CK;LS(0.001)S(0.001)AGPRS(0.998)PYCK;LSS(0.002)AGPRS(0.996)PY(0.002)CK;LSS(0.001)AGPRS(0.998)PYCK ;;;;; 113.65 0.00015663 3479030000 2648040 2796250 2302980 1293028 4033740 3425550 4212350 4248470 2670460 3427250 TRUE FALSE FALSE 2462426.07 2574664.966 3194755.532 3010234.53 3527790.716 3002940.469 3158375.476 3281186.124 2901937.623 2569044.292 0.958498878 1.002187846 1.24355798 1.171733216 1.373191862 1.168894004 1.229397051 1.277201072 1.129578665 1 21.29280033 -4.714505269 5.676230986 1.214426148 0.973242305 0.460286703 0.093801247 0.14121073 10.28772516 0.022516387 0.060031311 1.93E-05 4.714505269 -0.241183843 LSSAGPRS(ph)PYCKR ddPTM_HeLa_A485_30min_R1 1 LSSAGPRSPYCKR 13 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 LS(0.001)S(0.443)AGPRS(0.541)PY(0.015)CKR 70.197 0.00772 1098300000 250250 310160 269120 206850 487580 419860 532500 723020 286870 329930 TRUE FALSE FALSE 305917.2491 346430.514 368678.687 218149.6917 439034.8232 441843.2204 418727.0249 545698.2113 344442.1777 247684.5229 1.235108458 1.398676469 1.488501109 0.880756251 1.772556549 1.783895155 1.690565967 2.20319867 1.390648772 1 17.9181442 -5.797407121 24.99907711 1.710013013 1.278306912 0.23527716 0.328279777 215.857061 150028.501 0.096948858 0.109933274 1.59E-06 5.797407121 -0.431706102 LSSAGPRS(ph)PYCKR ddPTM_HeLa_A486_30min_R1 1 LSSAGPRSPYCKR 13 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 LS(0.004)S(0.278)AGPRS(0.717)PY(0.001)CKR 53.008 0.033373 1219100000 405340 467020 363230 224420 724400 406480 644070 684660 351630 555960 TRUE FALSE FALSE 376927.7592 430011.6343 503882.3836 522461.1016 633538.9972 356332.6304 482916.8737 528777.864 382109.5715 416743.9973 0.90445876 1.03183642 1.209093321 1.25367397 1.520211452 0.855039623 1.158785434 1.268831387 0.916892802 1 18.66880189 -7.774990201 24.99729374 0.958446277 1.154481049 0.150909185 0.18175436 518.917301 957221.2918 0.176348949 0.046548807 1.68E-08 7.774990201 0.196034771 LSSEMNTS(ph)TVNSAR ddPTM_HeLa_A485_30min_R1 1 LSSEMNTSTVNSAR 14 0 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 1 0 LSSEMNT(0.27)S(0.683)T(0.045)VNSAR 76.341 0.0030135 0 160180 185360 187890 197540 279890 214640 297100 310770 177220 258380 TRUE FALSE FALSE 195811.4884 207036.2396 257398.3298 208331.11 252023.1688 225878.2185 233622.1579 234553.1702 212786.4284 193970.6211 1.009490444 1.067358749 1.326996471 1.07403435 1.29928526 1.164497062 1.204420322 1.209220081 1.097003387 1 17.56547863 -4.539933374 24.82435162 1.182406129 1.023957443 0.24725601 0.094133313 210.1883228 305945.1382 0.021816187 0.057750563 2.88E-05 4.539933374 -0.158448686 LSSEMNTS(ph)TVNSAR ddPTM_HeLa_A486_30min_R1 1 LSSEMNTSTVNSAR 14 0 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 1 0 LSSEMNT(0.063)S(0.9)T(0.036)VNSAR 110.04 0.00015307 0 265380 336010 311130 118000 421580 331790 424170 445640 271290 348030 TRUE FALSE FALSE 246778.2324 309383.3439 431607.8684 274709.9634 368701.5053 290857.1232 318038.1796 344177.5003 294805.6356 260881.0227 0.945941678 1.185917399 1.654424166 1.053008611 1.413293698 1.114903339 1.219092812 1.319289141 1.130038638 1 17.99303248 -8.009056256 5.332460599 1.000156819 1.244764441 0.138351692 0.186794619 0.273302521 31.18289608 0.175412679 0.045645536 9.79E-09 8.009056256 0.244607622 LSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_HeLa_A485_30min_R1 2 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 LSSERPS(0.5)S(0.5)DGEGVVENGITTCNGK;LSSERPS(0.5)S(0.5)DGEGVVENGITTCNGK ; 285.75 7.94E-76 3963000000 1288890 1214370 997230 1383890 1715340 1279330 1751300 1828580 1274810 1844400 TRUE FALSE FALSE 1575599.134 1356380.008 1366146.875 1459488.407 1544554.727 1346313.741 1377120.448 1380117.888 1530652.674 1384625.024 1.137924786 0.979600964 0.986654763 1.054067622 1.115503981 0.972330933 0.994580067 0.996744869 1.10546368 1 20.4010639 -6.30324796 24.99827474 1.012417744 1.046754587 0.107003066 0.056741601 1452.774687 868642.0441 0.020490797 0.018071319 4.97E-07 6.30324796 0.034336843 LSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_HeLa_A486_30min_R1 1 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 LSSERPS(0.5)S(0.5)DGEGVVENGITTCNGK 183.79 8.72E-21 2687900000 497390 572070 378320 187510 521510 502840 612240 548160 426130 499080 TRUE FALSE FALSE 462525.5295 526737.0898 524815.6358 436532.7562 456097.3529 440804.7133 459051.0764 423355.9342 463067.2915 374107.1195 1.236345168 1.407984671 1.402848565 1.166865674 1.219162451 1.178284749 1.227057846 1.131643618 1.237793315 1 18.5130919 -1.000000069 0.028896684 5.29E-05 2.981834319 0.580326696 0.07391135 1028.473853 2.285455693 76.47656266 179.4160107 0.099999984 1.000000069 2.981781454 LSSERPSS(ph)DGEGVVENGITTCNGK ddPTM_HeLa_A485_30min_R1 2 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 LS(0.001)S(0.001)ERPS(0.308)S(0.69)DGEGVVENGITTCNGK;LSSERPS(0.119)S(0.881)DGEGVVENGITTCNGK ; 289.4 1.37E-77 4098200000 867870 823740 684850 920450 1269570 931260 1196110 1233180 928980 1380870 TRUE FALSE FALSE 1060924.687 920069.2274 938204.514 970731.8528 1143167.153 980019.3336 940551.3272 930740.6714 1115417.765 1036644.522 1.023421882 0.887545545 0.905039764 0.936417289 1.102757145 0.945376465 0.90730362 0.897839762 1.075988674 1 19.98348983 -6.274306331 0.007028548 1.923446288 8.35E-05 0.035075507 0.072497258 20579.42136 57.72657648 7749.315431 8044.052408 5.32E-07 6.274306331 -1.923362804 LSSERPSS(ph)DGEGVVENGITTCNGK ddPTM_HeLa_A486_30min_R1 2 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 LSS(0.001)ERPS(0.184)S(0.814)DGEGVVENGITTCNGK;LSSERPS(0.091)S(0.909)DGEGVVENGITTCNGK ; 317.81 1.41E-105 3952500000 794840 932830 613560 384840 929630 963170 1130590 1038280 782990 872550 TRUE FALSE FALSE 739125.8206 858909.1535 851146.8637 895926.9687 813027.1369 844343.8782 847704.4238 801886.3095 850860.2036 654057.8007 1.13006193 1.313200688 1.301332792 1.369797849 1.243050899 1.290931593 1.296069587 1.2260175 1.300894512 1 19.31905861 -11.58502154 0.583320944 0.386615595 1.279571738 0.644811079 0.061010003 179.4598261 9.873061952 139.7687461 0.024785583 2.60E-12 11.58502154 0.892956143 LSSESHHGGS(ph)PIHWVLPAGMSAK ddPTM_HeLa_A485_30min_R1 4 LSSESHHGGSPIHWVLPAGMSAK 23 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 LS(0.002)S(0.002)ES(0.012)HHGGS(0.984)PIHWVLPAGMSAK;LSSES(0.001)HHGGS(0.999)PIHWVLPAGMSAK;LSSESHHGGS(1)PIHWVLPAGMSAK;LS(0.007)S(0.007)ES(0.064)HHGGS(0.922)PIHWVLPAGMSAK ;;; 278.67 4.65E-75 16359690000 7542950 14593620 15760090 1973183 20896420 10627850 13560410 15107660 13625680 7235760 TRUE FALSE FALSE 9220853.205 16300216.91 21590403.12 2080972.991 18815899.05 11184307.79 10663117.63 11402482.7 16360228.99 5432018.196 1.697500426 3.000766257 3.974655891 0.383093892 3.463887339 2.058959928 1.963012133 2.09912454 3.0118141 1 22.37305688 -10.77549609 2.670895823 0.64631533 2.408880693 0.160472814 0.96465614 10102223.4 8121791.687 23440410.78 0.23853368 1.68E-11 10.77549609 1.762565363 LSSESHHGGS(ph)PIHWVLPAGMSAK ddPTM_HeLa_A486_30min_R1 4 LSSESHHGGSPIHWVLPAGMSAK 23 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 LSSESHHGGS(0.999)PIHWVLPAGMSAK;LS(0.004)S(0.004)ES(0.025)HHGGS(0.967)PIHWVLPAGMSAK;LS(0.024)S(0.024)ES(0.204)HHGGS(0.748)PIHWVLPAGMSAK;LSSESHHGGS(1)PIHWVLPAGMSAK ;;; 252.04 2.24E-50 17149860000 13702300 16134320 16152080 301765 21200400 9923720 11790740 11565110 16899670 2641470 TRUE FALSE FALSE 12741839.53 14855777.72 22406597.94 702524.1704 18541248.15 8699432.323 8840572.142 8931986.918 18364547 1980028.719 6.43517915 7.502809217 11.31629947 0.354805041 9.364130918 4.393588962 4.464870665 4.511039073 9.274889211 1 20.91708993 -9.342007618 0.230897836 1.01E-29 7.488343205 0.192605177 3.068055982 19.06648581 1.429420081 37.422451 6.837837946 4.55E-10 9.342007618 7.488343205 LSSGDPS(ph)TSPSLSQTTPSKDTDDQSRK ddPTM_HeLa_A486_30min_R1 1 LSSGDPSTSPSLSQTTPSKDTDDQSRK 27 2 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 0 LS(0.012)S(0.017)GDPS(0.313)T(0.313)S(0.279)PS(0.054)LS(0.004)QT(0.004)T(0.004)PSKDTDDQSRK 77.276 0.0033713 147550000 81243 88283 31307 57866 65746 95156 131450 119310 56411 141610 TRUE FALSE FALSE 75548.28524 81287.13356 43429.90883 134714.9724 57499.52362 83416.6202 98559.81966 92145.71752 61300.7509 106149.9343 0.711712972 0.765776579 0.409137407 1.269100855 0.541682141 0.7858377 0.928496285 0.868071357 0.577492123 1 16.69574395 -14 0.124819876 1.660734309 0.676530958 0.080110619 0.22642732 419.4443073 3.345717161 71.97237209 1.892792933 1.00E-14 14 -0.984203351 LSSGDPSTSPS(ph)LSQTTPSKDTDDQSRK ddPTM_HeLa_A485_30min_R1 1 LSSGDPSTSPSLSQTTPSKDTDDQSRK 27 2 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 0 LS(0.028)S(0.028)GDPS(0.119)T(0.119)S(0.11)PS(0.547)LS(0.028)QT(0.007)T(0.007)PS(0.008)KDT(0.001)DDQSRK 47.38 0.021169 253390000 36547 38083 27495 62539 62140 50877 79892 85519 28399 86615 TRUE FALSE FALSE 44676.75406 42536.47557 37666.54466 65955.34721 55953.12341 53540.84105 62822.42154 64545.33116 34098.41881 65023.47453 0.687086539 0.654171065 0.579276099 1.014331327 0.860506514 0.823407876 0.966149871 0.992646604 0.524401673 1 15.98867303 -5.251134089 24.89176985 0.882793437 0.641577206 0.396396609 0.137344376 675.5596944 1631767.826 0.036316304 0.062030913 5.61E-06 5.251134089 -0.241216231 LSSGDPSTSPSLSQT(ph)TPSKDTDDQSRK ddPTM_HeLa_A486_30min_R1 2 LSSGDPSTSPSLSQTTPSKDTDDQSRK 27 2 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 0 LSSGDPSTSPSLS(0.01)QT(0.907)T(0.083)PSKDTDDQSRK;LSSGDPSTSPS(0.002)LS(0.045)QT(0.843)T(0.107)PS(0.003)KDTDDQSRK ; 218.63 3.89E-38 667000000 587920 495090 212861 286410 472530 608240 852850 772280 346980 971060 TRUE FALSE FALSE 546709.844 455857.2653 295286.4798 666776.9544 413260.8812 533201.5329 639457.9095 596448.7028 377056.5058 727900.2555 0.751077967 0.626263368 0.405668878 0.916027916 0.567743833 0.732520052 0.878496614 0.819409937 0.518005734 1 19.47338125 -6.094226216 1.031827573 0.7888795 0.62983271 0.132443313 0.167787286 1.141469395 2.591493967 0.086271791 0.092356173 8.05E-07 6.094226216 -0.15904679 LSSGDPSTSPSLSQTT(ph)PSKDTDDQSRK ddPTM_HeLa_A485_30min_R1 1 LSSGDPSTSPSLSQTTPSKDTDDQSRK 27 2 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 0 LSSGDPS(0.011)T(0.013)S(0.253)PS(0.022)LS(0.046)QT(0.139)T(0.512)PS(0.005)KDTDDQSRK 142.01 6.95E-09 232330000 179080 137870 72181 219610 188210 190430 336090 328500 113020 315190 TRUE FALSE FALSE 218915.7282 153992.6972 98883.7556 231606.7382 169471.1516 200400.6203 264281.6259 247934.8599 135702.0773 236618.9336 0.925182634 0.650804628 0.417902972 0.978817437 0.716219742 0.846934002 1.116908194 1.047823419 0.573504729 1 17.85220599 -5.932422301 1.371795093 0.931069915 0.691577753 0.168156142 0.197888579 0.703886578 2.752317468 0.08272861 0.098914327 1.17E-06 5.932422301 -0.239492162 LSSGLVS(ph)PAPSFYSK ddPTM_HeLa_A485_30min_R1 1 LSSGLVSPAPSFYSK 15 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 LSSGLVS(1)PAPSFYSK 209.89 1.02E-25 354140000 542070 615090 510550 554270 797590 697190 771500 969810 563870 807290 TRUE FALSE FALSE 662651.6014 687019.4249 699423.6908 584548.3666 718179.1391 733693.7903 606662.7224 731962.5769 677033.5369 606047.4601 1.093398859 1.13360664 1.154074123 0.964525726 1.185021284 1.210621013 1.001015205 1.207764449 1.117129567 1 19.20907125 -9.930236921 4.28424667 0.999996883 1.119355854 0.172860067 0.077795501 9420604.278 5459480.809 247.74631 0.018318896 1.17E-10 9.930236921 0.119358971 LSSLFPFALLQR ddPTM_HeLa_A485_30min_R1 2 LSSLFPFALLQR 12 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 0 0 ; ; 138.66 0.0007331 16376900 11374.1 14183 13457.3 10821.1 14505.1 14618.5 16870.2 20049 9397.9 15180.6 FALSE FALSE TRUE 13904.2293 15841.57847 18435.71527 11412.22929 13060.92131 15383.90206 13265.74395 15131.95131 11283.97233 11396.3558 1.22005925 1.390056502 1.617685127 1.001392857 1.14606121 1.34989661 1.164033853 1.3277886 0.990138648 1 13.47628495 -7.227843085 0.183836057 0.901310186 1.470850369 0.270667862 0.16497721 4.866200011 0.878781516 1.00894776 1.175983402 5.92E-08 7.227843085 0.569540183 LSSLFPFALLQR ddPTM_HeLa_A486_30min_R1 2 LSSLFPFALLQR 12 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 0 0 ; ; 142.43 0.00058044 10261000 9806.9 13808.7 12860.1 4659.6 17659.4 12284.9 15667.4 14951.3 13092.5 14225.8 FALSE FALSE TRUE 9119.486953 12714.44832 17839.87513 10847.78428 15444.39338 10769.31394 11747.25081 11547.21537 14227.36844 10663.56709 0.855200411 1.192326003 1.672974436 1.017275382 1.448332745 1.009916649 1.10162488 1.082866107 1.334203492 1 13.3804025 -6.29459197 24.98295781 1.110645297 1.246716971 0.077970304 0.224599955 1823.853826 1374405.162 0.078992386 0.069669373 5.07E-07 6.29459197 0.136071674 LSSLIILMPHHVEPLER ddPTM_HeLa_A485_30min_R1 4 LSSLIILMPHHVEPLER 17 0 P50454;E9PR70;E9PPV6;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 ;;; ;;; 104.45 0.00023007 336313000 176963 217886 232298 179447 282038 235994 277657 334815 206842 256588 FALSE FALSE TRUE 216327.8088 243365.8723 318234.6969 189249.7352 253957.3064 248350.2809 218333.3137 252701.0963 248353.2921 192625.3338 1.123049625 1.263415708 1.652091606 0.982475833 1.318400345 1.289291892 1.133461053 1.311878824 1.289307524 1 17.55543793 -10.86507649 2.540078886 0.879220741 1.265915663 0.184766667 0.165345716 10521350.32 6836383.207 7685712.193 0.042832507 1.36E-11 10.86507649 0.386694922 LSSLIILMPHHVEPLER ddPTM_HeLa_A486_30min_R1 5 LSSLIILMPHHVEPLER 17 0 P50454;E9PR70;E9PPV6;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 ;;;; ;;;; 135.09 1.06E-06 438214000 335083 411100 408462 124196.1 686377 400306 471717 450739 402739 421215 FALSE FALSE TRUE 311595.4121 378522.9388 566629.4254 289134.7973 600285.1964 350920.3157 353688.4173 348115.5693 437648.7408 315740.0224 0.986873345 1.198843707 1.794607542 0.915736925 1.901200842 1.111421711 1.120188738 1.102538622 1.386104737 1 18.26837762 LSSLRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 4 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 0 LSSLRAS(0.779)T(0.111)S(0.111)K;LSSLRAS(0.816)T(0.092)S(0.092)K;LSSLRAS(0.985)T(0.015)SK;LSSLRAS(0.945)T(0.05)S(0.004)K ;;; 144.51 2.73E-06 4921120000 2655970 3854630 2592790 3020250 3992410 4002380 5366990 6518200 3294690 5185080 TRUE FALSE FALSE 3246781.364 4305395.448 3551970.916 3185238.61 3594911.642 4211938.428 4220288.742 4919601.23 3955904.062 3892534.98 0.834104608 1.106064678 0.912508413 0.818294152 0.923539971 1.082055383 1.084200595 1.263855368 1.016279644 1 21.89227857 -6.307487723 4.104744462 1.108852629 0.922610026 0.421664639 0.098812882 0.21594741 7.885801956 0.035863402 0.032209378 4.93E-07 6.307487723 -0.186242603 LSSLRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 4 LSSLRASTSK 10 1 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 0 LSSLRAS(0.842)T(0.079)S(0.079)K;LSSLRAS(0.954)T(0.023)S(0.023)K;LS(0.001)S(0.001)LRAS(0.936)T(0.05)S(0.012)K;LSSLRAS(0.985)T(0.008)S(0.008)K ;;; 143.25 2.93E-06 4066380000 4148365 3589531 2111399 1627411 4048748 3326352 4830654 4718349 2796206 5356559 TRUE FALSE FALSE 3857586.036 3305083.491 2928989.238 3788695.053 3540916.273 2915980.51 3621973.276 3644083.934 3038583.387 4015241.761 0.960735683 0.823134368 0.729467716 0.943578314 0.88186876 0.72622788 0.902056088 0.90756277 0.75676225 1 21.93705543 -10.19718498 4.496530166 1.000037494 0.847296394 0.236205588 0.082028048 17918243.51 40634812.34 4139.51003 0.019505283 6.35E-11 10.19718498 -0.152741101 LSSLS(ph)LSPANHENQPSEGER ddPTM_HeLa_A485_30min_R1 1 LSSLSLSPANHENQPSEGER 20 0 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 LSS(0.001)LS(0.499)LS(0.499)PANHENQPSEGER 115.79 1.15E-05 370950000 58059 71612 79510 59376 91019 75327 68138 91131 60941 64446 TRUE FALSE FALSE 70974.02425 79986.40046 108924.0577 62619.56053 81956.82877 79271.00524 53579.75966 68780.97936 73171.29972 48380.79824 1.466987458 1.653267481 2.251390255 1.294306064 1.693994968 1.638480722 1.107459191 1.42165863 1.51240373 1 15.56214695 -6.666911288 7.21797265 1.29668562 1.679859641 0.355343679 0.266112895 0.277840581 18.21287687 0.102601484 0.079070948 2.15E-07 6.666911288 0.383174021 LSSLSLS(ph)PANHENQPSEGER ddPTM_HeLa_A485_30min_R1 1 LSSLSLSPANHENQPSEGER 20 0 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 LS(0.004)S(0.002)LS(0.153)LS(0.841)PANHENQPSEGER 122.84 6.82E-07 396060000 81228 97431 112810 67746 114930 96561 112840 110970 89520 107230 TRUE FALSE FALSE 99296.88837 108824.7079 154543.1134 71446.79244 103487.1657 101616.7846 88730.81218 83754.43351 107485.8429 80499.53442 1.233508853 1.351867544 1.919801332 0.887542927 1.285562288 1.262327607 1.102252489 1.040433763 1.335235584 1 16.29669282 -5.281309609 24.9995769 1.142943356 1.486740186 0.395735301 0.209583894 849.4021027 1068666.835 0.058542559 0.086956642 5.23E-06 5.281309609 0.343796829 LSSLSLS(ph)PANHENQPSEGER ddPTM_HeLa_A486_30min_R1 1 LSSLSLSPANHENQPSEGER 20 0 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 LS(0.001)S(0.005)LS(0.15)LS(0.844)PANHENQPSEGER 147.26 1.34E-09 290250000 77571 93397 79878 11644 99279 71016 94114 92965 78862 66923 TRUE FALSE FALSE 72133.67348 85995.88157 110808.9008 27107.82046 86826.50208 62254.76796 70565.68176 71798.89891 85697.82166 50165.0452 1.43792701 1.714259027 2.208886693 0.540372691 1.730816781 1.240998941 1.406670351 1.431253548 1.708317441 1 15.61439483 -5.222039114 24.99953434 1.33270858 1.779747462 0.267703487 0.369722459 778.6089613 494027.7022 0.096595235 0.167304949 6.00E-06 5.222039114 0.447038882 LSSPAAFLPACNS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 LSSPAAFLPACNSPSK 16 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 LSSPAAFLPACNS(0.877)PS(0.123)K;LSSPAAFLPACNS(0.995)PS(0.005)K ; 372.93 7.42E-119 1172710000 818060 598940 526550 1229400 810140 575820 911210 611910 653350 1555050 TRUE FALSE FALSE 1000034.625 668980.8229 721342.7566 1296559.009 729479.617 605969.0448 716522.5396 461838.1131 784471.3521 1167404.654 0.856630665 0.573049646 0.617902931 1.110633751 0.624872973 0.519073693 0.613773928 0.395610992 0.671978949 1 20.15487329 -4.241668272 22.71290087 0.664454976 0.856631263 0.057140538 0.204888439 3800.830267 4366122.424 0.051941609 1.65150942 5.73E-05 4.241668272 0.192176287 LSSPAAFLPACNS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 LSSPAAFLPACNSPSK 16 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 LSSPAAFLPACNS(1)PSK;LSSPAAFLPACNS(0.914)PS(0.086)K ; 348.7 2.63E-104 1787100000 1073550 1142710 645290 523830 973140 1258280 1492790 1295710 974110 1614010 TRUE FALSE FALSE 998299.6888 1052157.498 895163.5695 1219502.713 851079.707 1103046.207 1119278.153 1000705.118 1058546.639 1209851.391 0.825142407 0.869658461 0.739895475 1.007977279 0.703458056 0.911720411 0.92513689 0.82713061 0.874939391 1 20.20639842 -14 0.179787574 1.598390108 0.823697111 0.234582618 0.082644566 196.3277426 1.888668733 41.89402056 0.245825657 1.00E-14 14 -0.774692998 LSSPAAFLPACNS(ph)PSKEMK ddPTM_HeLa_A485_30min_R1 2 LSSPAAFLPACNSPSKEMK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 LSSPAAFLPACNS(0.988)PS(0.012)KEMK;LSSPAAFLPACNS(0.946)PS(0.054)KEMK ; 190.87 8.88E-19 512360000 231325 169930 116745 350610 382450 354370 570400 652010 203079 585040 TRUE FALSE FALSE 282782.4482 189801.8353 159933.8337 369762.9365 344371.9351 372924.2652 448529.3803 492103.5252 243835.0925 439200.2949 0.643857601 0.432153251 0.364147829 0.841900474 0.784088579 0.849098395 1.021241073 1.12045354 0.55517971 1 18.7445195 -5.340870144 5.450294432 0.890806301 0.476311838 0.574260426 0.158570273 0.154093431 7.894324174 0.045303414 0.068252711 4.56E-06 5.340870144 -0.414494463 LSSPAAFLPACNS(ph)PSKEMK ddPTM_HeLa_A486_30min_R1 2 LSSPAAFLPACNSPSKEMK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 LSSPAAFLPACNS(0.972)PS(0.028)KEMK;LSSPAAFLPACNS(0.964)PS(0.036)KEMK ; 203.33 6.70E-26 624440000 407700 367090 208760 324750 541040 529740 824390 824780 291230 851120 TRUE FALSE FALSE 379122.3354 338000.4515 289597.4628 756034.412 473177.7182 464386.0648 618118.9025 636995.5988 316474.0509 637994.0121 0.594241213 0.529786244 0.453918779 1.185018037 0.741664826 0.727884676 0.968847498 0.998435074 0.496045488 1 19.28318336 -5.229565335 24.99644986 0.86627168 0.526362428 0.435523435 0.18140677 633.5834995 496871.8718 0.047967698 0.083073418 5.89E-06 5.229565335 -0.339909252 LSSS(ph)ASREPYK ddPTM_HeLa_A485_30min_R1 3 LSSSASREPYK 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 LS(0.011)S(0.113)S(0.873)AS(0.002)REPYK;LS(0.031)S(0.223)S(0.745)ASREPYK;LS(0.013)S(0.121)S(0.864)AS(0.002)REPYK ;; 141.54 5.61E-07 1378410000 766070 1090150 845640 863800 1771520 1604580 2253940 2780270 1102090 1393520 TRUE FALSE FALSE 936479.6286 1217633.559 1158477.426 910987.2067 1595141.249 1688593.328 1772367.306 2098404.423 1323269.354 1046141.11 0.895175249 1.163928602 1.10738161 0.870807196 1.524785933 1.614116214 1.694195257 2.005852178 1.264905223 1 19.99664603 -5.82351138 6.7089285 1.585204148 1.028166124 0.456493306 0.265378001 0.170647614 14.47554528 0.079719447 0.091182971 1.50E-06 5.82351138 -0.557038024 LSSS(ph)ASREPYK ddPTM_HeLa_A486_30min_R1 4 LSSSASREPYK 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 LS(0.001)S(0.224)S(0.752)AS(0.024)REPYK;LSS(0.016)S(0.982)AS(0.002)REPYK;LSS(0.013)S(0.986)ASREPYK;LS(0.003)S(0.23)S(0.766)ASREPYK ;;; 165.64 2.65E-08 1565300000 974743.3 914722.6 767641.7 591082.4 1738127.8 1081468.7 1718699.2 1763519 818082.2 1538634.5 TRUE FALSE FALSE 906418.8282 842236.6498 1064893.124 1376069.699 1520115.604 948048.0874 1288662.482 1362004.221 888994.2238 1153350.406 0.785900645 0.730252181 0.92330407 1.193106355 1.317999799 0.821994844 1.117320872 1.180911034 0.77079283 1 20.13739946 -4.971435099 4.238247203 1.068680882 0.763583418 0.362478725 0.157904076 0.208860781 8.644335813 0.042643635 0.090636186 1.07E-05 4.971435099 -0.305097464 LSSS(ph)KENLDASK ddPTM_HeLa_A485_30min_R1 1 LSSSKENLDASK 12 1 K7EN13;K7EQL6;Q8NFA0 K7EN13 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 LS(0.037)S(0.196)S(0.767)KENLDASK 97.579 0.00065395 276840000 284040 171770 146200 744700 283850 241370 384400 273830 225610 995020 TRUE FALSE FALSE 347223.7181 191857.0073 200285.4639 785381.0753 255588.8973 254007.76 302269.7997 206672.7632 270887.8576 746979.826 0.464836808 0.256843626 0.268127005 1.051408683 0.342163052 0.340046345 0.404655908 0.276677838 0.362644141 1 19.51070975 -10.14889953 3.890601827 1.000274118 0.418886255 0.38455813 0.220652064 218240778.7 390219796.6 771625.1026 0.055382054 7.10E-11 10.14889953 -0.581387862 LSSS(ph)KENLDASK ddPTM_HeLa_A486_30min_R1 2 LSSSKENLDASK 12 1 K7EN13;K7EQL6;Q8NFA0 K7EN13 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 LS(0.001)S(0.194)S(0.805)KENLDASK;LS(0.027)S(0.193)S(0.78)KENLDASK ; 154.88 3.25E-08 602200000 727500 779240 263800 622160 579750 1136450 1428600 1182880 676010 1699680 TRUE FALSE FALSE 676506.0068 717490.1845 365950.4248 1448419.922 507032.349 996246.3536 1071149.17 913564.0461 734607.0911 1274069.065 0.530980639 0.56314858 0.28722966 1.136845688 0.397963001 0.781940619 0.840730851 0.717044367 0.576583414 1 20.28101205 -6.465789729 0.078764227 1.368963951 8.03E-14 0.221204677 0.221323145 51.57284843 1.949024537 13.60715909 19.16225868 3.42E-07 6.465789729 -1.368963951 LSSS(ph)LDNKEK ddPTM_HeLa_A486_30min_R1 1 LSSSLDNKEK 10 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LS(0.037)S(0.149)S(0.814)LDNKEK 53.448 0.0085815 0 272790 240130 126600 147610 228510 314930 392660 356290 156460 411260 TRUE FALSE FALSE 253668.8297 221101.2243 175622.9105 343643.5398 199848.145 276077.1386 294412.3149 275170.5448 170022.0788 308277.8191 0.82285787 0.717214183 0.569690388 1.114720289 0.648272865 0.895546554 0.955022699 0.89260572 0.551522258 1 18.23387156 -5.222537654 24.99900613 0.856855242 0.704650224 0.169220805 0.163852611 1036.729758 666221.3035 0.04307104 0.074599607 5.99E-06 5.222537654 -0.152205018 LSSS(ph)LGR ddPTM_HeLa_A485_30min_R1 1 LSSSLGR 7 0 Q9BST9-3;Q9BST9-2;Q9BST9 Q9BST9-3 RTKN Rhotekin 1 0 LSS(0.002)S(0.997)LGR 129.29 0.0016941 180480000 254670 335030 385880 263650 428740 366120 416620 430780 330040 371890 TRUE FALSE FALSE 311320.4629 374208.8441 528633.0698 278052.5319 386053.1402 385289.4771 327605.7335 325130.5296 396276.0007 279184.6671 1.115105876 1.340363165 1.893488906 0.995944852 1.382787759 1.380052426 1.173437413 1.164571582 1.4194046 1 18.09086019 -11.11398084 0.200344456 0.589539178 1.399791593 0.14283636 0.232483964 69.48471723 1.960251432 13.80497795 0.63659854 7.69E-12 11.11398084 0.810252415 LSSS(ph)LGR ddPTM_HeLa_A486_30min_R1 2 LSSSLGR 7 0 Q9BST9-3;Q9BST9-2;Q9BST9 Q9BST9-3 RTKN Rhotekin 1 0 LS(0.008)S(0.002)S(0.99)LGR;LS(0.004)S(0.242)S(0.754)LGR ; 128 0.0017146 710140000 1548550 1739510 1573850 506680 2003860 1521790 1776160 1752700 1546800 1826860 TRUE FALSE FALSE 1440004.642 1601664.892 2183286.869 1179576.646 1752517.194 1334047.022 1331745.982 1353648.471 1680877.869 1369402.365 1.051556999 1.16960868 1.594335547 0.861380611 1.279767903 0.974181918 0.972501593 0.988495789 1.227453605 1 20.38511498 -5.290606367 24.99944968 1.046928835 1.261611524 0.266200456 0.173485581 965.6540265 827674.0504 0.048265964 0.071602375 5.12E-06 5.290606367 0.214682689 LSSS(ph)PGLFGAFSVR ddPTM_HeLa_A485_30min_R1 2 LSSSPGLFGAFSVR 14 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LSSS(1)PGLFGAFSVR;LSS(0.001)S(0.999)PGLFGAFSVR ; 349.81 5.80E-95 1287080000 806870 987200 1008820 836700 1320310 844370 978800 927820 831650 1046680 TRUE FALSE FALSE 986355.4478 1102644.453 1382024.499 882406.8024 1188855.301 888579.9076 769671.3839 700270.6902 998554.5267 785761.9387 1.255285347 1.403280559 1.758833599 1.122995094 1.512996802 1.130851297 0.979522354 0.891199555 1.270810506 1 19.58373276 -6.411577565 4.26955365 1.028847332 1.412695224 0.501482536 0.179138683 0.193762868 5.910942439 0.064768403 0.056051288 3.88E-07 6.411577565 0.383847891 LSSS(ph)PGLFGAFSVR ddPTM_HeLa_A486_30min_R1 2 LSSSPGLFGAFSVR 14 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LSS(0.348)S(0.652)PGLFGAFSVR;LSSS(1)PGLFGAFSVR ; 294 6.40E-58 1353630000 580390 619160 530970 206454 672000 545930 619170 626480 511380 593000 TRUE FALSE FALSE 539707.6581 570095.5067 736575.8039 480635.3456 587711.4938 478578.7072 464247.1171 483844.18 555706.8301 444508.9402 1.214166037 1.282528775 1.657055094 1.081272618 1.322158995 1.076645853 1.044404454 1.088491448 1.25015895 1 18.76185291 -5.869463951 1.499928136 1.098208793 1.354556118 0.342927534 0.149308449 0.451148152 2.105625394 0.057545028 0.07171103 1.35E-06 5.869463951 0.256347325 LSSS(ph)PPSGSGGGGGASSSSHCSGESQCR ddPTM_HeLa_A485_30min_R1 1 LSSSPPSGSGGGGGASSSSHCSGESQCR 28 0 Q9Y4X0-2;Q9Y4X0-3;Q9Y4X0 Q9Y4X0-2 AMMECR1 AMME syndrome candidate gene 1 protein 1 0 LS(0.002)S(0.043)S(0.954)PPS(0.001)GSGGGGGASSSSHCSGESQCR 125.71 5.17E-06 325360000 36232 58446 76792 54929 79492 38354 66096 51436 52011 83107 TRUE FALSE FALSE 44291.6834 65280.75129 105200.5564 57929.63218 71577.49737 40362.15613 51974.04965 38821.24035 62449.13063 62389.95437 0.709916906 1.046334333 1.686177806 0.928508969 1.147259973 0.646933574 0.833051573 0.622235434 1.00094849 1 15.92902613 -6.24664417 24.13699741 0.797799642 1.123089759 0.226324401 0.258669243 714.8889138 1166274.204 0.086711274 0.086324866 5.67E-07 6.24664417 0.325290117 LSSS(ph)PPSGSGGGGGASSSSHCSGESQCR ddPTM_HeLa_A486_30min_R1 1 LSSSPPSGSGGGGGASSSSHCSGESQCR 28 0 Q9Y4X0-2;Q9Y4X0-3;Q9Y4X0 Q9Y4X0-2 AMMECR1 AMME syndrome candidate gene 1 protein 1 0 LSS(0.011)S(0.987)PPS(0.002)GS(0.001)GGGGGASSSSHCSGESQCR 190.84 8.78E-21 181380000 50685 67188 80046 44065 94786 54241 61517 56149 62636 81803 TRUE FALSE FALSE 47132.24324 61863.77819 111041.9549 102585.5469 82897.05604 47549.2969 46124.79594 43365.09842 68065.33891 61318.99635 0.768640161 1.008884389 1.810889961 1.672981507 1.351898449 0.775441539 0.752210549 0.707204961 1.110020433 1 15.90404646 -6.256516382 23.68338784 0.843377983 1.351813342 0.360697583 0.299781621 227.4236302 1094082.564 0.110419102 0.106945639 5.54E-07 6.256516382 0.508435359 LSSS(ph)SATLLNSPDR ddPTM_HeLa_A485_30min_R1 6 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 LSS(0.004)S(0.985)S(0.012)ATLLNSPDR;LSS(0.14)S(0.859)SATLLNSPDR;LS(0.008)S(0.271)S(0.72)S(0.001)ATLLNSPDR;LSS(0.028)S(0.97)S(0.002)ATLLNSPDR;LS(0.008)S(0.18)S(0.782)S(0.02)AT(0.01)LLNSPDR;LS(0.001)S(0.096)S(0.757)S(0.146)ATLLNSPDR ;;;;; 342.32 6.11E-82 3854520000 2568783 3463980 3085424 2031028 3309275 3346007 3408644 3893210 2618507 2686084 TRUE FALSE FALSE 3140199.916 3869062.328 4226850.733 2141977.917 2979791.961 3521198.753 2680359.363 2938394.143 3144017.337 2016492.693 1.557258267 1.918708827 2.096139871 1.062229447 1.47771027 1.74619961 1.329218486 1.457180655 1.559151366 1 20.94341675 -9.142814382 0.073196461 8.01E-11 2.510517201 0.346655125 0.264039742 77.60057781 1.644603732 35.85228293 20.38082054 7.20E-10 9.142814382 2.510517201 LSSS(ph)SATLLNSPDR ddPTM_HeLa_A486_30min_R1 5 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 LSS(0.078)S(0.921)S(0.001)ATLLNSPDR;LSS(0.009)S(0.845)S(0.146)ATLLNSPDR;LSS(0.034)S(0.963)S(0.002)ATLLNSPDR;LS(0.002)S(0.095)S(0.902)S(0.002)ATLLNSPDR;LSS(0.02)S(0.975)S(0.005)ATLLNSPDR ;;;; 287.44 9.60E-50 3832790000 3006810 3977680 4004410 1001680 5102260 3425370 3343640 3392580 3469450 3256430 TRUE FALSE FALSE 2796048.146 3662474.15 5555024.794 2331961.662 4462286.974 3002782.676 2507025.907 2620163.594 3770184.719 2440998.732 1.145452519 1.500399858 2.275718017 0.95533096 1.828057883 1.230145119 1.027049246 1.073398179 1.544525472 1 21.21904012 -6.442671226 8.431218529 1.161860931 1.546369805 0.203807328 0.363613366 0.564498432 54.89999897 0.126337654 0.111153725 3.61E-07 6.442671226 0.384508874 LSSS(ph)TVAISYSPDR ddPTM_HeLa_A485_30min_R1 2 LSSSTVAISYSPDR 14 0 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LSS(0.027)S(0.968)T(0.005)VAISYSPDR;LSS(0.035)S(0.958)T(0.007)VAISYSPDR ; 159.12 4.76E-09 633340000 555850 588600 567670 470260 671320 559440 597630 605880 392230 598610 TRUE FALSE FALSE 679496.9148 657431.6499 777674.7557 495949.113 604481.0237 588731.4133 469941.4683 457286.98 470946.9633 449387.5436 1.512051067 1.462950318 1.730521388 1.103611171 1.345121894 1.31007506 1.045737638 1.017578227 1.047975116 1 18.77760061 -6.029973445 0.58753424 0.984518255 1.585574118 0.693027838 0.133144208 0.525191108 0.394447253 0.105125256 0.153270749 9.33E-07 6.029973445 0.601055863 LSSS(ph)TVAISYSPDR ddPTM_HeLa_A486_30min_R1 2 LSSSTVAISYSPDR 14 0 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LSS(0.024)S(0.975)T(0.001)VAISYSPDR;LSS(0.028)S(0.969)T(0.002)VAISYSPDR ; 227.92 4.75E-28 821120000 426870 597400 512030 184088 657090 491480 546250 505510 509460 506480 TRUE FALSE FALSE 396948.6174 550059.8483 710301.7286 428566.1673 574671.6451 430846.1946 409572.4724 390416.4082 553620.403 379654.1114 1.045553322 1.448844703 1.870918047 1.128833205 1.513671597 1.134838743 1.078804259 1.028347637 1.458223121 1 18.53432611 -6.274963759 23.04879699 1.137987007 1.415114357 0.228459202 0.23963836 423.2060575 721241.1087 0.084082816 0.074655276 5.31E-07 6.274963759 0.27712735 LSSS(ph)VSAMR ddPTM_HeLa_A486_30min_R1 1 LSSSVSAMR 9 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 LS(0.014)S(0.069)S(0.913)VS(0.004)AMR 86.879 0.003445 0 237160 315710 234980 122620 342480 251640 301790 265360 186430 214370 TRUE FALSE FALSE 220536.3087 290691.9898 325970.549 285465.5569 299522.9649 220595.2153 226278.95 204943.3208 202589.9025 160690.3567 1.372430264 1.809019507 2.02856323 1.776494637 1.863975979 1.372796849 1.408167576 1.27539278 1.260747108 1 17.29392383 -6.488741283 1.871722234 1.236784172 1.790065149 0.657290592 0.183223283 0.223913223 1.571185888 0.084445399 0.06567486 3.25E-07 6.488741283 0.553280976 LSSSDRYS(ph)DAS(ph)DDS(ph)FSEPR ddPTM_HeLa_A485_30min_R1 2 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 3 0 LSS(0.001)S(0.012)DRY(0.029)S(0.957)DAS(1)DDS(0.998)FS(0.002)EPR;LS(0.014)S(0.019)S(0.027)DRY(0.124)S(0.968)DAS(0.848)DDS(0.993)FS(0.007)EPR ; 235.21 1.81E-44 814430000 522100 625930 629290 637690 864620 684930 888400 923930 611920 852460 TRUE FALSE FALSE 638239.3438 699127.0686 862090.5579 672525.39 778535.3969 720791.8757 698586.0824 697334.7188 734726.7311 639957.4104 0.997315342 1.092458744 1.347106142 1.050890855 1.216542514 1.126312258 1.091613397 1.089658011 1.148086918 1 19.28761637 -9.889988441 4.982163117 0.99999961 1.13219219 0.151125083 0.09133806 3.91E-07 8.71E-08 0.087492879 0.021220077 1.29E-10 9.889988441 0.13219258 LSSSDRYS(ph)DAS(ph)DDS(ph)FSEPR ddPTM_HeLa_A486_30min_R1 2 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 3 0 LS(0.021)S(0.024)S(0.028)DRY(0.26)S(0.762)DAS(0.905)DDS(0.973)FS(0.027)EPR;LS(0.01)S(0.012)S(0.013)DRY(0.011)S(0.954)DAS(1)DDS(0.941)FS(0.06)EPR ; 84.499 0.0002112 447090000 625010 695120 568680 237092 878940 653230 805690 777170 624670 698480 TRUE FALSE FALSE 581200.0266 640036.1596 788888.1258 551962.158 768695.1494 572641.1242 604097.8403 600225.3565 678816.8986 523576.0617 1.110058441 1.222432052 1.5067307 1.054215802 1.468163283 1.093711432 1.153791941 1.146395721 1.296501021 1 18.99803961 LSSSDRYS(ph)DAS(ph)DDSFSEPR ddPTM_HeLa_A485_30min_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 0 LS(0.029)S(0.029)S(0.033)DRY(0.007)S(0.903)DAS(1)DDSFSEPR 145.87 2.38E-08 654430000 328500 454720 422670 418580 587660 467550 573670 647640 433150 547040 TRUE FALSE FALSE 401573.6917 507895.5485 579033.2218 441445.9655 529150.507 492030.195 451100.718 488805.2745 520079.2319 410672.9955 0.977842946 1.236739581 1.409961765 1.074933025 1.288495988 1.198107011 1.098442612 1.190254241 1.266407184 1 18.64763056 -10.54979416 6.351113977 0.999726717 1.197661391 0.201504921 0.115263738 0.000437592 3.10E-05 0.109493859 0.02651992 2.82E-11 10.54979416 0.197934674 LSSSDRYS(ph)DAS(ph)DDSFSEPR ddPTM_HeLa_A486_30min_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 0 LSS(0.001)S(0.001)DRY(0.001)S(0.996)DAS(1)DDSFSEPR 164.46 2.36E-12 562720000 344400 404990 318950 148530 456270 392980 416490 433020 339630 440090 TRUE FALSE FALSE 320259.3385 372897.1175 442455.9818 345785.3463 399040.3621 344498.1231 312279.7968 334430.7988 369069.4019 329888.5995 0.970810567 1.130372853 1.341228471 1.048188227 1.209621559 1.044286234 0.946621973 1.013768888 1.118769798 1 18.3316194 -6.417779511 6.212571619 1.017543825 1.145068203 0.254466786 0.099131571 0.333430587 16.7859229 0.035783424 0.03136434 3.82E-07 6.417779511 0.127524378 LSSSDRYS(ph)DASDDS(ph)FSEPR ddPTM_HeLa_A485_30min_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 0 LS(0.12)S(0.157)S(0.208)DRY(0.004)S(0.511)DAS(0.006)DDS(0.941)FS(0.053)EPR 122.35 3.54E-05 447680000 246600 330080 302550 289110 405720 346380 404510 435240 316370 393630 TRUE FALSE FALSE 301455.3192 368679.9847 414475.8352 304903.3472 365325.0922 364515.9212 318083.134 328496.7076 379862.5571 295505.2852 1.020135119 1.247625688 1.402600413 1.031803364 1.236272617 1.233534354 1.076404213 1.111644102 1.285467895 1 18.17282441 -13.04303307 0.355087423 7.19E-10 1.190426317 0.174447113 0.116434249 387.410592 6.125176055 289.074856 0.088042783 9.06E-14 13.04303307 1.190426317 LSSSGAPPADFPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 LSSSGAPPADFPSPR 15 0 Q8NG08 Q8NG08 HELB DNA helicase B 1 0 LSSSGAPPADFPS(1)PR 145.79 7.86E-08 154760000 128400 162250 158630 124820 195340 153640 163690 197160 131870 166280 TRUE FALSE FALSE 156962.137 181223.7261 217313.8381 131638.6005 175891.2637 161684.3528 128716.2943 148806.2009 158335.0994 124829.4562 1.257412648 1.451770533 1.740885884 1.054547577 1.409052552 1.295241987 1.031137187 1.192076017 1.268411353 1 16.92959888 -6.061254713 0.903404227 1.136407627 1.444960423 0.314183107 0.17710501 0.732670924 1.305379349 0.10085422 0.115225811 8.68E-07 6.061254713 0.308552796 LSSSGAPPADFPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LSSSGAPPADFPSPR 15 0 Q8NG08 Q8NG08 HELB DNA helicase B 1 0 LSSSGAPPADFPS(1)PR 133.34 1.37E-05 171600000 93260 100760 83095 28984 113100 91416 118600 91636 81302 93560 TRUE FALSE FALSE 86722.9556 92775.41064 115271.6094 67476.21677 98913.94338 80138.02337 88925.02558 70772.4832 88349.32282 70131.96703 1.236568134 1.322869079 1.643638618 0.962132101 1.410397392 1.142674686 1.267967082 1.009133013 1.259758232 1 16.09778457 -6.890064429 0.339979619 1.004781618 1.388409575 0.232625832 0.174210376 2.115559217 0.663786343 0.226611605 0.287708167 1.29E-07 6.890064429 0.383627958 LSSSPPRAS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 LSSSPPRASPVR 12 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 LS(0.01)S(0.008)S(0.007)PPRAS(0.975)PVR 69.594 0.006082 198860000 237820 299160 266560 238050 351210 299110 357110 356210 265390 315080 TRUE FALSE FALSE 290722.2385 334144.1597 365171.6365 251054.0687 316242.2992 314770.9371 280810.5312 268848.939 318651.3387 236536.3546 1.229080574 1.412654559 1.5438288 1.061376249 1.336971223 1.330750774 1.187177048 1.136607265 1.34715587 1 17.85170241 -13.9999999 0.102550313 0.057080895 1.478814272 0.32796273 0.129852602 208.8456426 1.446409605 41.62912631 2.041122445 1.00E-14 13.9999999 1.421733377 LSSSPPRAS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 LSSSPPRASPVR 12 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 LS(0.001)S(0.001)S(0.001)PPRAS(0.997)PVR;LS(0.027)S(0.022)S(0.016)PPRAS(0.935)PVR;LS(0.004)S(0.004)S(0.004)PPRAS(0.988)PVR ;; 81.632 0.0025362 390000000 1051160 1106740 906420 476176 1364340 1138040 1336910 1309360 1020170 1388130 TRUE FALSE FALSE 977479.1122 1019037.892 1257410.099 1108561.793 1193211.755 997640.1955 1002400.978 1011247.311 1108599.157 1040533.213 0.939402126 0.979342013 1.208428605 1.065378576 1.146731061 0.958777849 0.963353178 0.971854909 1.065414485 1 19.98889158 -6.283822596 24.89235932 0.988338083 1.070610919 0.197556552 0.076293941 1292.721241 1437629.356 0.028356885 0.025028388 5.20E-07 6.283822596 0.082272835 LSSSS(ph)PGATVSPS(ph)SSDAEYDKLPDADLAR ddPTM_HeLa_A485_30min_R1 1 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 2 0 LS(0.003)S(0.016)S(0.1)S(0.615)PGAT(0.132)VS(0.243)PS(0.696)S(0.162)S(0.032)DAEYDKLPDADLAR 143.01 4.30E-09 179510000 149140 151770 117980 214820 198610 177910 261480 271230 148980 308790 TRUE FALSE FALSE 182315.6785 169518.1813 161625.7116 226555.0726 178835.691 187225.0925 205612.6619 204710.4172 178878.9195 231814.3359 0.786472837 0.731267032 0.697220519 0.977312606 0.771460878 0.807651053 0.886971296 0.883079196 0.771647357 1 17.82261026 -13.99999995 0.058170311 1.65451317 0.526251383 0.383228502 0.07583858 455.8166152 1.937361995 43.6347799 7.658621525 1.00E-14 13.99999995 -1.128261787 LSSSS(ph)PGATVSPSSSDAEYDKLPDADLAR ddPTM_HeLa_A485_30min_R1 2 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 LSS(0.017)S(0.114)S(0.781)PGAT(0.085)VS(0.003)PSSSDAEYDKLPDADLAR;LS(0.003)S(0.023)S(0.128)S(0.811)PGAT(0.033)VS(0.001)PS(0.001)SSDAEYDKLPDADLAR ; 252.29 3.23E-52 1535320000 423450 382210 288020 573660 511820 453690 672520 653250 375090 822970 TRUE FALSE FALSE 517644.9916 426906.1347 394570.5835 604997.5932 460861.4037 477444.5069 528830.608 493039.4132 450367.1225 617818.7246 0.837859021 0.690989311 0.63865106 0.979247745 0.745949233 0.772790606 0.855964034 0.798032487 0.728963213 1 19.23682407 -11.39033106 2.215400137 2.588488703 0.783146018 0.343794358 0.0898731 3718636.549 323125.0404 29803019.75 0.023326387 4.07E-12 11.39033106 -1.805342685 LSSSSATLLNS(ph)PDR ddPTM_HeLa_A485_30min_R1 6 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR ;;;;; 346.19 7.33E-95 10291400000 2429780 3019410 2880400 2740590 3477900 2777180 3119840 3132110 2936080 3342920 TRUE FALSE FALSE 2970276.178 3372503.734 3945979.823 2890301.492 3131628.064 2922588.85 2453260.697 2363955.112 3525324.325 2509591.566 1.183569557 1.34384566 1.572359374 1.151701947 1.247863639 1.16456753 0.97755377 0.941968065 1.404740266 1 21.25902116 -5.926487778 1.455049424 1.083748145 1.350191371 0.310275747 0.158330932 0.476713994 2.08781124 0.063735926 0.075946 1.18E-06 5.926487778 0.266443226 LSSSSATLLNS(ph)PDR ddPTM_HeLa_A486_30min_R1 6 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR ;;;;; 389.78 2.76E-125 11825790000 3625220 3737400 2969830 811704 3498420 3026750 3152820 3268950 2997980 3347100 TRUE FALSE FALSE 3371110.799 3441234.813 4119827.711 1889687.933 3059615.542 2653340.359 2363951.089 2524681.446 3257847.32 2508964.374 1.343626412 1.371575798 1.642043129 0.753174478 1.21947349 1.057544055 0.942201935 1.006264366 1.298482894 1 21.25866055 -5.253197042 24.98058501 1.04403781 1.444331176 0.589906953 0.157659605 431.284728 1307119.654 0.04187962 0.071005417 5.58E-06 5.253197042 0.400293366 LSSSSATLLNS(ph)PDRAR ddPTM_HeLa_A485_30min_R1 6 LSSSSATLLNSPDRAR 16 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR ;;;;; 311.19 1.85E-78 5160330000 819257 1115029 1002597 1097052 1668640 1476180 1884060 2433390 1093160 1681210 TRUE FALSE FALSE 1001497.893 1245421.942 1373499.352 1156981.173 1502504.343 1553470.502 1481515.19 1836597.287 1312547.185 1262115.287 0.793507458 0.986773518 1.088251894 0.91670007 1.190465212 1.230846752 1.173835072 1.455173949 1.039958234 1 20.26741227 -5.77318656 17.90537231 1.20653732 0.959337559 0.415636168 0.134474663 6.686236484 10190.69813 0.040284032 0.04641677 1.69E-06 5.77318656 -0.247199761 LSSSSATLLNS(ph)PDRAR ddPTM_HeLa_A486_30min_R1 6 LSSSSATLLNSPDRAR 16 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR ;;;;; 268.49 1.25E-51 4159400000 1337271 1101640 891692 804202 1370960 1452697 2080558 2056150 1013483 2312487 TRUE FALSE FALSE 1243535.209 1014342.034 1236979.023 1872222.898 1199001.413 1273478.014 1559980.383 1588009.53 1101332.522 1733425.203 0.717386136 0.585166313 0.713603921 1.080071349 0.691694923 0.734659916 0.899940984 0.916110789 0.635350473 1 20.72519416 -1.064098102 0.133885488 0.964063912 5.45E-62 0.189102599 0.141063537 143.6699563 1.317282578 0.719545995 26.20728899 0.086278363 1.064098102 -0.964063912 LSSSSPGAT(ph)VS(ph)PSSSDAEYDKLPDADLAR ddPTM_HeLa_A485_30min_R1 1 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 2 0 LS(0.003)S(0.003)S(0.003)S(0.006)PGAT(0.563)VS(0.521)PS(0.299)S(0.299)S(0.299)DAEY(0.004)DKLPDADLAR 61.583 0.013495 132230000 102550 82243 71490 138940 117280 114060 149170 151360 86916 189820 TRUE FALSE FALSE 125361.8937 91860.60343 97937.12595 146529.9404 105603.1914 120032.0052 117298.6109 114238.7227 104359.244 142501.3674 0.879724146 0.644629628 0.687271482 1.028270416 0.741067916 0.842321779 0.823140248 0.801667554 0.732338544 1 17.12061624 -11.3860776 2.241866413 2.487256054 0.797343065 0.258255728 0.102786672 5841907.409 755272.3054 43950544.97 0.025805534 4.11E-12 11.3860776 -1.689912989 LSSSSPGATVS(ph)PS(ph)SSDAEYDKLPDADLAR ddPTM_HeLa_A486_30min_R1 1 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 2 0 LSSSSPGAT(0.005)VS(0.995)PS(0.426)S(0.349)S(0.225)DAEYDKLPDADLAR 179.2 3.96E-31 0 176050 179550 112980 96797 171530 200330 288560 278450 151130 271330 TRUE FALSE FALSE 163709.8041 165321.8041 156728.8817 225348.3078 150015.1079 175615.3214 216359.2359 215053.0135 164230.0701 203387.2019 0.80491694 0.812842708 0.770593627 1.107976833 0.737583813 0.863453156 1.063779991 1.057357648 0.807474947 1 17.63386938 -4.744952128 0.392829108 0.981666376 0.691573644 0.195747089 0.118442644 6.748712055 1.09087551 0.107948112 0.892264262 1.80E-05 4.744952128 -0.290092732 LSSSSPGATVS(ph)PSS(ph)SDAEYDKLPDADLAR ddPTM_HeLa_A486_30min_R1 1 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 2 0 LSSSSPGAT(0.086)VS(0.913)PS(0.004)S(0.629)S(0.368)DAEYDKLPDADLAR 160.53 7.88E-14 182900000 106990 112300 65533 58316 124880 137810 157310 157940 90657 184400 TRUE FALSE FALSE 99490.5535 103400.939 90909.13263 135762.5951 109216.3859 120808.4033 117949.3741 121980.5098 98515.22175 138225.0398 0.719772291 0.748062284 0.657689322 0.982185249 0.790134596 0.873997964 0.853314091 0.882477661 0.712716176 1 17.07665946 -1 0.075802718 1.098341286 0.125129848 0.325296407 0.090189519 271.1717396 1.510185407 3.110459791 27.82473167 0.1 1 -0.973211437 LSSSSPGATVS(ph)PSSSDAEYDKLPDADLAR ddPTM_HeLa_A486_30min_R1 1 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 LSSS(0.001)S(0.004)PGAT(0.284)VS(0.388)PS(0.284)S(0.034)S(0.004)DAEYDKLPDADLAR 307.14 1.13E-93 767610000 351720 319060 180640 166460 335950 342540 447100 450910 259930 486520 TRUE FALSE FALSE 327066.2443 293776.5236 250588.6457 387527.2924 293812.0184 300280.8975 335230.8511 348247.6363 282460.9417 364692.2253 0.896828124 0.80554644 0.68712363 1.062614626 0.805643768 0.823381681 0.919215787 0.954908309 0.774518682 1 18.47631992 -14 0.142570333 1.469051779 0.813429857 0.142781215 0.100272411 269.906776 2.336383496 36.18284751 0.583083888 1.00E-14 14 -0.655621921 LSSSSS(ph)NDS(ph)GNKVGIQLPEVELSVSTK ddPTM_HeLa_A486_30min_R1 1 LSSSSSNDSGNKVGIQLPEVELSVSTK 27 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 LSS(0.002)S(0.013)S(0.105)S(0.88)NDS(1)GNKVGIQLPEVELSVSTK 184.55 3.54E-20 227500000 223410 177140 69153 143020 154400 210420 270730 249440 158520 328830 TRUE FALSE FALSE 207750.1127 163102.7813 95930.89358 332957.7878 135033.7123 184460.5198 202990.4905 192647.9572 172260.6412 246488.8277 0.842837846 0.66170456 0.389189622 1.350802756 0.547828936 0.748352457 0.823528159 0.781568719 0.698857806 1 17.91116273 -11.32569444 1.966893732 2.049649271 0.759911393 0.084878437 0.235895084 11313273.16 1377306.67 52697377.8 0.059047425 4.72E-12 11.32569444 -1.289737879 LSSSTVAISYS(ph)PDR ddPTM_HeLa_A485_30min_R1 4 LSSSTVAISYSPDR 14 0 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LSSSTVAISYS(1)PDR;LSSSTVAISYS(1)PDR;LSSSTVAISYS(1)PDR;LSSSTVAISYS(1)PDR ;;; 357.34 2.60E-95 3205190000 1015870 1176020 1291570 1128640 1646090 1050020 1314130 1245280 1220650 1454890 TRUE FALSE FALSE 1241846.777 1313545.309 1769375.49 1190294.745 1482199.5 1104997.424 1033355.39 939873.1275 1465623.259 1092212.698 1.13700086 1.20264607 1.619991685 1.089801233 1.357061223 1.011705344 0.946111862 0.860522066 1.341884471 1 20.0588224 -6.270623536 23.74508403 1.017956538 1.2851079 0.325641212 0.178729651 388.0245051 1003209.855 0.061718291 0.055246332 5.36E-07 6.270623536 0.267151362 LSSSTVAISYS(ph)PDR ddPTM_HeLa_A486_30min_R1 3 LSSSTVAISYSPDR 14 0 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 LSSSTVAISYS(1)PDR;LSSSTVAISYS(1)PDR;LSSSTVAIS(0.002)YS(0.998)PDR ;; 316.86 7.23E-69 2533630000 1222870 1355980 1242720 433798 1316140 1237000 1307530 1377860 1155210 1299420 TRUE FALSE FALSE 1137153.128 1248527.206 1723934.465 1009903.667 1151057.449 1084391.517 980372.1644 1064151.356 1255344.533 974036.7742 1.167464266 1.281807052 1.769886426 1.036822935 1.181739211 1.11329628 1.006504262 1.092516612 1.288806097 1 19.89361672 LSST(ph)PPLSALGR ddPTM_HeLa_A485_30min_R1 1 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 LSS(0.025)T(0.96)PPLS(0.015)ALGR 144.28 1.00E-06 87373000 233310 320710 331160 279130 369300 281950 381050 427650 297840 382140 TRUE FALSE FALSE 285209.0046 358214.2447 453669.8647 294378.1651 332531.1953 296712.466 299635.5546 322768.167 357613.756 286879.5308 0.994176907 1.248657385 1.581395032 1.026138618 1.159131829 1.034275486 1.04446474 1.125100024 1.246564211 1 18.13008551 LSST(ph)PPLSALGR ddPTM_HeLa_A486_30min_R1 2 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 LS(0.003)S(0.112)T(0.885)PPLS(0.001)ALGR;LSS(0.172)T(0.828)PPLSALGR ; 122.39 0.00031032 970060000 1021820 1146430 950220 405850 1220770 975970 1198650 1252310 960510 1164250 TRUE FALSE FALSE 950195.6947 1055582.712 1318170.632 944839.3105 1067649.643 855564.7443 898735.092 967186.3507 1043767.78 872714.222 1.088782182 1.209539944 1.510426436 1.082644566 1.223366844 0.980349263 1.029816026 1.108250933 1.1960018 1 19.73514978 -5.792698864 2.009485914 1.073675747 1.255915618 0.269228406 0.125695899 0.434873544 3.614426739 0.044151394 0.056058486 1.61E-06 5.792698864 0.182239871 LSSWDQAET(ph)PGHT(ph)PSLR ddPTM_HeLa_A485_30min_R1 4 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 LSSWDQAET(1)PGHT(1)PSLR;LSSWDQAET(1)PGHT(0.992)PS(0.008)LR;LSSWDQAET(1)PGHT(0.971)PS(0.029)LR;LSSWDQAET(1)PGHT(0.996)PS(0.004)LR ;;; 181.75 8.75E-18 1254520000 1000790 892400 1125350 1359880 1300960 879690 1143000 856860 1098380 1557700 TRUE FALSE FALSE 1223412.283 996758.4172 1541663.795 1434166.801 1171431.854 925749.2081 898788.7125 646713.7415 1318814.791 1169394.057 1.046193347 0.852371714 1.318344133 1.226418753 1.001742609 0.791648634 0.768593535 0.553033203 1.127776204 1 20.15732973 -6.100430446 3.923313373 0.816430991 1.108189069 0.308827279 0.182096691 0.272385032 7.482463262 0.062600819 0.06362268 7.94E-07 6.100430446 0.291758079 LSSWDQAET(ph)PGHT(ph)PSLR ddPTM_HeLa_A486_30min_R1 4 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 LSSWDQAET(1)PGHT(1)PSLR;LSSWDQAET(1)PGHT(0.992)PS(0.008)LR;LSSWDQAET(1)PGHT(0.992)PS(0.008)LR;LSSWDQAET(1)PGHT(0.995)PS(0.005)LR ;;; 227.87 1.13E-34 1568250000 913800 1220290 966120 293067 1096080 1083560 1143510 1054650 1088600 971710 TRUE FALSE FALSE 849747.3389 1123589.776 1340227.538 682274.7868 958599.4259 949881.384 857391.7032 814529.2178 1182960.724 728387.4912 1.166614404 1.542571488 1.839992523 0.93669207 1.316056958 1.304087996 1.177109318 1.1182636 1.624081603 1 19.47434662 -5.265561161 24.99994416 1.222683032 1.519010665 0.262233415 0.234220604 486.0556161 2948090.197 0.064290471 0.099374723 5.43E-06 5.265561161 0.296327633 LSSWDQAET(ph)PGHTPSLR ddPTM_HeLa_A485_30min_R1 1 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LSSWDQAET(1)PGHTPSLR 117.38 0.0001042 450730000 104460 109860 126990 127380 163650 116750 136350 125130 122750 160420 TRUE FALSE FALSE 127696.7666 122707.1713 173968.8855 134338.4469 147356.4314 122862.8495 107217.7086 94441.6713 147384.7991 120430.2463 1.060338001 1.018906588 1.444561402 1.115487604 1.223583243 1.020199271 0.890288876 0.78420226 1.223818796 1 16.87783825 -6.413540217 4.37518661 0.956206771 1.175196898 0.284222244 0.149681879 0.286677135 9.081204253 0.054943591 0.0475808 3.86E-07 6.413540217 0.218990127 LSSWDQAETPGHT(ph)PSLR ddPTM_HeLa_A485_30min_R1 3 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LSSWDQAETPGHT(0.998)PS(0.002)LR;LSSWDQAET(0.002)PGHT(0.997)PSLR;LSSWDQAETPGHT(0.958)PS(0.041)LR ;; 143.09 1.08E-07 662840000 389585 438746 500130 576830 565310 402549 494480 438233 517240 760930 TRUE FALSE FALSE 476246.8392 490053.5281 685148.8991 608340.7623 509025.7515 423625.8432 388830.3085 330755.6696 621045.3236 571244.1549 0.833701028 0.857870534 1.199397654 1.064940021 0.891082643 0.741584556 0.680672713 0.579009285 1.087180181 1 19.12374797 -6.011094159 4.676372168 0.784645595 0.994163314 0.172662094 0.168689592 0.288883898 16.71509254 0.056430925 0.060265003 9.75E-07 6.011094159 0.209517719 LSSWDQAETPGHT(ph)PSLR ddPTM_HeLa_A486_30min_R1 3 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LSSWDQAETPGHT(0.993)PS(0.007)LR;LSSWDQAETPGHT(0.999)PS(0.001)LR;LSSWDQAETPGHT(0.999)PS(0.001)LR ;; 200.89 6.13E-25 783160000 645640 803580 635340 175961 764580 700940 732550 710740 736000 654780 TRUE FALSE FALSE 600383.9701 739901.3942 881360.663 409646.1006 668679.247 614465.1494 549258.2419 548920.0173 799797.0726 490818.8261 1.223229302 1.507483729 1.795694493 0.834617742 1.362374896 1.251918461 1.119065147 1.118376045 1.629515883 1 18.90483106 -5.252425944 24.99826521 1.199972457 1.508670594 0.276081653 0.237511788 898.8322807 2492856.165 0.063221792 0.107515405 5.59E-06 5.252425944 0.308698137 LST(ph)GSFPEDLLESDSSR ddPTM_HeLa_A486_30min_R1 2 LSTGSFPEDLLESDSSR 17 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 LS(0.25)T(0.375)GS(0.375)FPEDLLESDSSR;LS(0.103)T(0.562)GS(0.335)FPEDLLESDSSR ; 100.45 0.00042194 26320000 50960 53187 47435 22782.2 58121 54356 60337 61049 48158 57712 TRUE FALSE FALSE 47387.96716 48972.26842 65803.10235 53038.11295 50830.92222 47650.10937 45240.04442 47149.47539 52332.37421 43260.53956 1.095408602 1.13203092 1.521088341 1.226015983 1.174995105 1.101468217 1.045757748 1.089895685 1.2097023 1 15.40076404 -6.001287182 2.593156917 1.092578016 1.254760122 0.279092337 0.116845032 0.398789053 5.404738275 0.042822482 0.046606334 9.97E-07 6.001287182 0.162182106 LST(ph)PQKK ddPTM_HeLa_A485_30min_R1 2 LSTPQKK 7 1 Q96C90;F5GXC4;F5H2U0;B5MC51;P53671-3 Q96C90 PPP1R14B;LIMK2 Protein phosphatase 1 regulatory subunit 14B 1 0 LS(0.1)T(0.9)PQKK;LS(0.126)T(0.874)PQKK ; 108.57 0.0027302 1647220000 1426810 890770 598670 1637330 844870 1782350 870560 1376610 929420 1602620 TRUE FALSE FALSE 1744198.962 994937.8028 820142.9457 1726773.192 760751.7763 1875671.09 684557.7442 1038994.239 1115946.069 1203116.328 1.449734262 0.826967251 0.681682167 1.435250401 0.632317722 1.559010585 0.568987161 0.863585852 0.927546275 1 20.19834471 LST(ph)PQKK ddPTM_HeLa_A486_30min_R1 2 LSTPQKK 7 1 Q96C90;F5GXC4;F5H2U0;B5MC51;P53671-3 Q96C90 PPP1R14B;LIMK2 Protein phosphatase 1 regulatory subunit 14B 1 0 LS(0.494)T(0.506)PQKK;LS(0.148)T(0.852)PQKK ; 80.231 0.010835 442530000 650200 321110 525790 571310 448440 1902460 740920 805240 939310 1253730 TRUE FALSE FALSE 604624.3376 295664.0741 729389.9691 1330038.552 392192.4737 1667753.828 555533.9793 621904.4303 1020730.147 939787.8476 0.643362584 0.314607254 0.776121942 1.415254045 0.417320223 1.774606718 0.591127009 0.661749811 1.086128268 1 19.84197559 -4.981481424 8.546335517 0.979759154 0.493520408 0.222909508 0.38159891 0.288700533 108.6047099 0.096354709 0.19739598 1.04E-05 4.981481424 -0.486238747 LST(ph)TPSPT(ph)SSLHEDGVEDFRR ddPTM_HeLa_A486_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 2 0 LS(0.09)T(0.582)T(0.302)PS(0.072)PT(0.366)S(0.364)S(0.225)LHEDGVEDFRR 150.36 1.86E-09 802850000 347810 376130 309610 63880 437930 284520 341750 365010 301540 271310 TRUE FALSE FALSE 323430.3151 346324.089 429499.2836 148715.8683 383000.7359 249418.8152 256240.5353 281905.1911 327677.73 203372.2101 1.590336826 1.702907633 2.111887772 0.731249704 1.883250105 1.226415424 1.259958454 1.386153944 1.611221759 1 17.63376303 -5.236103145 24.99725673 1.335438459 1.791830366 0.336573869 0.320127537 940.0592858 927480.9319 0.082514151 0.142850292 5.81E-06 5.236103145 0.456391907 LSTEADTDT(ph)PK ddPTM_HeLa_A485_30min_R1 1 LSTEADTDTPK 11 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LSTEADTDT(1)PK 186.51 6.18E-10 291300000 275190 235420 151880 449040 289570 245950 388630 328510 163830 589770 TRUE FALSE FALSE 336405.0661 262950.3211 208066.7323 473569.9182 260739.3941 258827.5617 305596.0257 247942.4074 196709.1783 442751.1929 0.75980612 0.593900876 0.469940535 1.069607323 0.588907265 0.584589191 0.690220672 0.560003929 0.444288308 1 18.75613667 LSTEADTDT(ph)PK ddPTM_HeLa_A486_30min_R1 2 LSTEADTDTPK 11 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LSTEADTDT(1)PK;LSTEADTDT(1)PK ; 180.61 9.68E-10 882850000 863590 795460 334200 540440 675220 1068850 1321670 1126720 565500 1725490 TRUE FALSE FALSE 803056.8006 732424.8526 463611.1902 1258171.632 590527.6114 936986.1543 990974.1868 870190.4521 614517.9953 1293416.073 0.620880486 0.566271649 0.35843933 0.972750887 0.456564306 0.724427486 0.76616814 0.672784628 0.475112385 1 20.30275501 -11.56478221 2.263076398 8.056260325 0.628164836 0.313587898 0.166897986 5296455.011 499436.7352 191519117.4 0.042749064 2.72E-12 11.56478221 -7.428095489 LSTEADTDT(ph)PKK ddPTM_HeLa_A486_30min_R1 1 LSTEADTDTPKK 12 1 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LSTEADT(0.009)DT(0.99)PKK 70.26 0.010492 236180000 236300 213220 72618 211940 177150 338500 442110 365720 182710 574960 TRUE FALSE FALSE 219736.5903 196323.6707 100737.6344 493407.0309 154930.1951 296739.3116 331489.4018 282453.5396 198547.4499 430986.2736 0.509845913 0.455521864 0.233737454 1.144832356 0.359478259 0.68851221 0.769141437 0.655365511 0.460681609 1 18.7172824 -14 0.082098584 2.165962073 0.243213133 0.213544054 0.239455778 398.6264714 2.304020456 86.27471784 7.567394732 1.00E-14 14 -1.92274894 LSTFMPVDERGS(ph)QEK ddPTM_HeLa_A485_30min_R1 3 LSTFMPVDERGSQEK 15 1 A0A087X2C4;H0YAH0 A0A087X2C4 PCDH7 1 0 LSTFMPVDERGS(1)QEK;LSTFMPVDERGS(1)QEK;LSTFMPVDERGS(1)QEK ;; 139.11 1.93E-06 225320000 267891 210420 113665 367230 140646 223892 310069 251584 170078 740660 TRUE FALSE FALSE 327482.4287 235026.7886 155714.4135 387290.845 126642.7904 235614.6389 243820.2251 189882.6295 204211.0946 556027.0928 0.588968475 0.422689455 0.280048249 0.696532327 0.227763704 0.423746688 0.438504217 0.34149888 0.367268245 1 19.08479566 -10.17199915 3.40015104 1.000884607 0.417407182 0.638405084 0.130753742 34308834.65 53888272.14 330977.3654 0.031872893 6.73E-11 10.17199915 -0.583477425 LSTFMPVDERGS(ph)QEK ddPTM_HeLa_A486_30min_R1 2 LSTFMPVDERGSQEK 15 1 A0A087X2C4;H0YAH0 A0A087X2C4 PCDH7 1 0 LSTFMPVDERGS(1)QEK;LSTFMPVDERGS(1)QEK ; 173.21 1.05E-12 217104000 217880 187580 113429 90601 202631 256430 223890 196341 234210 479240 TRUE FALSE FALSE 202607.7371 172715.4776 157351.7465 210923.7067 177215.1305 224794.2738 167870.3539 151638.4404 254511.5114 359235.1847 0.563997475 0.480786641 0.43801875 0.587146571 0.493312287 0.625757953 0.46729931 0.422114667 0.70848158 1 18.45456913 -8.037877986 4.232975986 0.999612127 0.512020027 0.856668379 0.062259308 0.072769519 3.947069991 0.060326193 0.015813628 9.16E-09 8.037877986 -0.4875921 LSTGS(ph)FPEDLLESDSSR ddPTM_HeLa_A486_30min_R1 1 LSTGSFPEDLLESDSSR 17 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 LS(0.098)T(0.098)GS(0.805)FPEDLLESDSSR 238.83 2.66E-42 32098000 21131 22760 21077 7849.4 27360 21641 23021 23742 19394 22804 TRUE FALSE FALSE 19649.82602 20956.41471 29238.57886 18273.79989 23928.25368 18971.15345 17260.90231 18336.46488 21075.08754 17093.72997 1.149534131 1.225970853 1.710485594 1.06903525 1.399826353 1.109831118 1.009779746 1.072701214 1.23291333 1 14.06117962 -6.346753218 6.215022756 1.082436338 1.314607762 0.302687764 0.171635621 0.311803093 18.55726281 0.060653405 0.053388362 4.50E-07 6.346753218 0.232171424 LSTHS(ph)PFR ddPTM_HeLa_A485_30min_R1 3 LSTHSPFR 8 0 A0A1B0GWG0;A0A2R8Y6D0;A0A2R8Y5C8;A0A2R8Y783;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6 A0A1B0GWG0;P11171 EPB41 Protein 4.1 1 0 LSTHS(1)PFR;LSTHS(1)PFR;LSTHS(1)PFR ;; 130.98 0.00026327 331550000 114047.5 186428 194612 76178.4 225215 143580 155516.6 179522.9 149393.9 141359 TRUE FALSE FALSE 139416.9729 208229.1329 266607.0773 80339.8331 202791.8038 151097.6268 122289.208 135494.6273 179375.8854 106120.8028 1.313757239 1.962189574 2.512297968 0.757060171 1.910952409 1.423826646 1.152358489 1.276796101 1.690298986 1 16.69534797 -5.260649736 24.99999846 1.349908849 1.932692354 0.31845613 0.40917849 89.19828672 2823964.448 0.111357707 0.179309988 5.49E-06 5.260649736 0.582783505 LSTHS(ph)PFR ddPTM_HeLa_A486_30min_R1 2 LSTHSPFR 8 0 A0A1B0GWG0;A0A2R8Y6D0;A0A2R8Y5C8;A0A2R8Y783;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6 A0A1B0GWG0;P11171 EPB41 Protein 4.1 1 0 LSTHS(1)PFR;LSTHS(1)PFR ; 141.88 0.00029279 246734000 114711 120677 118733 15245.6 141419 95448 103496 101909 114368 61325 TRUE FALSE FALSE 106670.3513 111114.115 164709.5974 35492.52727 123680.9103 83672.5962 77600.20613 78706.54536 124281.5103 45968.82084 2.320493528 2.417162611 3.583072055 0.772100015 2.690539111 1.820203231 1.688105214 1.712172379 2.703604488 1 15.48836804 -5.252825153 24.99790587 1.836299707 2.737934616 0.324051961 0.659006762 814.3828575 2363279.084 0.171797292 0.291692803 5.59E-06 5.252825153 0.901634909 LSTIALALGVER ddPTM_HeLa_A485_30min_R1 1 LSTIALALGVER 12 0 P30153;E9PPI5;E9PNM7;E9PHZ6;C9J9C1;P30154-5;P30154-4;P30154;P30154-2 P30153 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 0 115.78 0.0031988 9024600 6195.1 7175.8 6885.2 8095.4 10349 6727.8 8940.9 9080.5 6830.2 11665 FALSE FALSE TRUE 7573.178622 8014.947389 9432.321997 8537.631203 9318.617222 7080.057205 7030.603675 6853.493137 8200.95849 8757.130178 0.864801421 0.915248172 1.077101951 0.974934828 1.0641177 0.808490574 0.802843344 0.78261862 0.936489275 1 13.09624244 -6.273226183 24.954989 0.84854921 0.980883178 0.295204605 0.085273512 833.7372468 1765181.356 0.030149048 0.026806676 5.33E-07 6.273226183 0.132333968 LSTT(ph)PS(ph)PTSS(ph)LHEDGVEDFRR ddPTM_HeLa_A485_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 3 0 LS(0.057)T(0.308)T(0.635)PS(0.814)PT(0.186)S(0.318)S(0.682)LHEDGVEDFRR 139 1.28E-07 896580000 259520 310150 309880 226230 355050 279540 383290 367760 292810 278300 TRUE FALSE FALSE 317249.3287 346419.3446 424517.5072 238588.3721 319699.9753 294176.2821 301396.9603 277566.2834 351574.2812 208924.9317 1.518484778 1.658104381 2.031914064 1.141981333 1.530214574 1.40804776 1.442608873 1.328545526 1.682778012 1 17.67262514 -12.22409856 0.118082379 1.32E-10 1.810734242 0.338325912 0.223552715 110.8348874 1.312458435 31.50116366 2.579275254 5.97E-13 12.22409856 1.810734242 LSTT(ph)PSPTS(ph)SLHEDGVEDFRR ddPTM_HeLa_A485_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 2 0 LS(0.023)T(0.031)T(0.59)PS(0.374)PT(0.219)S(0.469)S(0.294)LHEDGVEDFRR 156.58 3.50E-10 872450000 560820 718620 701770 567920 901550 684510 915890 876590 678640 685540 TRUE FALSE FALSE 685572.4742 802656.3578 961383.9261 598944.0316 811788.5165 720349.8851 720202.6194 661604.9281 814836.8231 514647.4944 1.332120493 1.559623561 1.868043538 1.16379471 1.577368053 1.3996957 1.399409552 1.285549692 1.58329115 1 18.97322508 -12.32665266 0.215052354 1.33E-10 1.538090428 0.352385746 0.187048528 73.07155593 1.391654379 33.12066931 0.390150339 4.71E-13 12.32665266 1.538090428 LSTTPS(ph)PT(ph)SSLHEDGVEDFRR ddPTM_HeLa_A486_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 2 0 LS(0.026)T(0.033)T(0.361)PS(0.566)PT(0.496)S(0.316)S(0.203)LHEDGVEDFRR 142.45 1.83E-09 842600000 631370 716140 644310 142230 799100 578610 667430 714590 626270 576070 TRUE FALSE FALSE 587114.2234 659390.4583 893804.0872 331118.6279 698869.4267 507226.9811 500431.9546 551893.4564 680555.5878 431818.3224 1.359632496 1.527008985 2.069861423 0.766800783 1.618433935 1.174630521 1.158894676 1.278068641 1.576022953 1 18.72006493 -5.256904766 24.9997372 1.247857601 1.639651725 0.314233085 0.287791146 502.3621499 2769558.503 0.076437748 0.126911388 5.53E-06 5.256904766 0.391794124 LSTTPS(ph)PTS(ph)SLHEDGVEDFRR ddPTM_HeLa_A485_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 2 0 LST(0.002)T(0.024)PS(0.963)PT(0.195)S(0.764)S(0.051)LHEDGVEDFRR 163.72 7.48E-14 1122900000 443380 582920 518600 402000 669870 598860 644740 750860 514070 530400 TRUE FALSE FALSE 542008.3514 651087.4233 710451.7207 423960.2421 603175.3907 630215.3836 506986.032 566710.4077 617239.1337 398181.0413 1.361210844 1.635154253 1.784242963 1.064742411 1.514826996 1.582735787 1.273255076 1.423248093 1.550146968 1 18.60306501 -12.05852904 0.298552157 2.42E-12 1.497102992 0.341911638 0.191795529 85.52954459 2.291179342 54.14932285 0.202386601 8.74E-13 12.05852904 1.497102992 LSTTPS(ph)PTSSLHEDGVEDFRR ddPTM_HeLa_A485_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 1 0 LST(0.001)T(0.032)PS(0.914)PT(0.046)S(0.006)S(0.001)LHEDGVEDFRR 127.38 1.22E-06 166070000 22235 41028 36993 14794 42889 33129 35277 40186 33139 25110 TRUE FALSE FALSE 27181.09904 45825.8677 50678.25011 15602.15876 38618.82057 34863.58321 27739.78076 30330.32049 39789.69333 18850.53912 1.441926879 2.431010987 2.688424442 0.827677058 2.048685204 1.849474065 1.471564319 1.608989552 2.110798693 1 14.20231816 -11.158479 0.169612686 8.34E-15 2.096269597 0.183565779 0.509467306 73.28355224 1.708386936 32.66199122 2.21389382 6.94E-12 11.158479 2.096269597 LSTTPS(ph)PTSSLHEDGVEDFRR ddPTM_HeLa_A486_30min_R1 2 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 1 0 LSTT(0.003)PS(0.971)PT(0.024)S(0.001)SLHEDGVEDFRR;LS(0.004)T(0.004)T(0.008)PS(0.876)PT(0.048)S(0.048)S(0.013)LHEDGVEDFRR ; 137.94 3.03E-07 231180000 130236 150396 135962 16829.9 187322 111798 119963 130579 114830 94980 TRUE FALSE FALSE 121107.1289 138478.0732 188610.1276 39180.85774 163826.3281 98005.49944 89946.98856 100849.0122 124783.5569 71196.38978 1.701029073 1.945015381 2.649152972 0.55032085 2.301048249 1.376551532 1.26336446 1.416490534 1.752666915 1 16.11951647 -1.00000005 0.077755301 0.494697389 4.469616208 0.168660742 0.531911218 358.8821161 2.044915072 16.29937491 153.7936355 0.099999989 1.00000005 3.974918819 LSVAS(ph)TPISQR ddPTM_HeLa_A485_30min_R1 1 LSVASTPISQR 11 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 LS(0.029)VAS(0.486)T(0.486)PISQR 59.57 0.030819 110830000 223130 244490 288400 227250 358780 240010 286910 310760 317900 378380 TRUE FALSE FALSE 272764.4987 273080.9787 395091.1613 239664.0921 323058.6034 252576.5525 225609.3347 234545.6227 381699.614 284056.8296 0.960246227 0.96136037 1.390887739 0.843718817 1.137302715 0.88917613 0.794240135 0.825699643 1.343743837 1 18.11582006 -6.267211729 24.60482835 0.948657441 1.059806362 0.042509206 0.195741898 1177.773642 5020278.121 0.067867422 0.061474048 5.40E-07 6.267211729 0.111148922 LSVAS(ph)TPISQR ddPTM_HeLa_A486_30min_R1 1 LSVASTPISQR 11 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 LS(0.001)VAS(0.499)T(0.499)PISQR 94.82 0.002122 74255000 321030 336520 308180 110980 385020 343200 395370 396190 315330 373250 TRUE FALSE FALSE 298527.4548 309852.9296 427515.5493 258367.0486 336727.2014 300859.4734 296444.2442 305986.1858 342663.0583 279785.7706 1.066985838 1.107464933 1.528010336 0.923445993 1.203517966 1.075320853 1.059540103 1.093644559 1.224733687 1 18.09396307 LSVDYGK ddPTM_HeLa_A485_30min_R1 2 LSVDYGK 7 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VQQ4;C9JDS9;P68363;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA4A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 160.03 0.0020867 189535000 481260 400020 388910 625280 616850 460920 569310 526150 501830 841140 FALSE FALSE TRUE 588314.6267 446798.8593 532783.9929 659437.4631 555434.2481 485053.0585 447672.2677 397110.8875 602542.6779 631459.278 0.931674689 0.707565594 0.843734523 1.044307188 0.879604224 0.768146222 0.708948753 0.628878063 0.954206706 1 19.26833017 -6.256044335 22.40296895 0.782397877 0.87868146 0.043540239 0.129142604 253.3811068 1052166.227 0.043728458 0.04240288 5.55E-07 6.256044335 0.096283583 LSVDYGK ddPTM_HeLa_A486_30min_R1 2 LSVDYGK 7 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VQQ4;C9JDS9;P68363;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA4A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 143 0.0036056 92163000 148333 182184 117859 55814 185891 204177 195699 198963 167950 199896 FALSE FALSE TRUE 137935.6227 167747.0763 163497.1612 129937.8127 162574.8174 178987.7177 146733.0403 153663.4682 182508.0412 149840.7405 0.920548192 1.119502452 1.09113957 0.867172788 1.084984076 1.194519709 0.979259978 1.025511938 1.218013476 1 17.19307041 -5.920361838 24.99992541 1.085383554 1.009867898 0.143686496 0.099299259 71.78350819 22529.67645 0.030998414 0.035148897 1.20E-06 5.920361838 -0.075515656 LSVDYGKK ddPTM_HeLa_A485_30min_R1 2 LSVDYGKK 8 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VQQ4;C9JDS9;P68363;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA4A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 108.98 0.0043385 364110000 1080670 1062910 776310 1208010 1507310 1455880 2053440 2131100 1117080 1762330 FALSE FALSE TRUE 1321061.313 1187208.078 1063499.374 1274000.527 1357236.924 1532107.626 1614705.769 1608444.384 1341267.71 1323013.564 0.998524391 0.897351403 0.803846161 0.962953489 1.025867731 1.158043777 1.220475596 1.215742927 1.013797398 1 20.33539642 -5.90536794 2.250140179 1.140140715 0.900653889 0.571330165 0.083482983 0.201833817 2.081509609 0.029341994 0.034136185 1.24E-06 5.90536794 -0.239486826 LSVDYGKK ddPTM_HeLa_A486_30min_R1 3 LSVDYGKK 8 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VQQ4;C9JDS9;P68363;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA4A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 83.783 0.024229 665420000 1699750 1658710 906390 686420 2054950 1745720 2249370 2093780 1269880 2149840 FALSE FALSE TRUE 1580606.303 1527267.779 1257368.482 1598020.45 1797199.009 1530350.816 1686553.835 1617072.001 1379954.221 1611506.071 0.980825534 0.947726978 0.780244335 0.991631666 1.115229438 0.949640118 1.046569954 1.003453868 0.856313386 1 20.61997819 -5.483688266 24.89672614 1.000915738 0.903832765 0.220546278 0.078630101 745.7914292 473782.0271 0.022329358 0.033113634 3.28E-06 5.483688266 -0.097082973 LSVGSVTS(ph)RPS(ph)TPTLGTPTPQTMSVSTK ddPTM_HeLa_A486_30min_R1 1 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 D6RIE8;Q16594 D6RIE8 TAF9 Transcription initiation factor TFIID subunit 9 2 0 LSVGS(0.005)VT(0.195)S(0.772)RPS(0.626)T(0.388)PT(0.014)LGTPTPQTMSVSTK 135.72 2.83E-06 540790000 166950 175830 141540 74430 205830 199880 226360 206680 186350 240940 TRUE FALSE FALSE 155247.6671 161896.5904 196348.0786 173276.8015 180012.8821 175220.8378 169722.3338 159623.4758 202502.968 180607.0557 0.859588051 0.896402357 1.08715619 0.959413245 0.996710131 0.970177146 0.939732576 0.883816389 1.121235088 1 17.46249473 -4.54380146 24.64960731 0.986937708 0.868791584 0.3411902 0.065062433 188.7203466 222335.901 0.016093704 0.042589473 2.86E-05 4.54380146 -0.118146124 LSVGSVTS(ph)RPST(ph)PTLGTPTPQTMSVSTK ddPTM_HeLa_A485_30min_R1 1 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 D6RIE8;Q16594 D6RIE8 TAF9 Transcription initiation factor TFIID subunit 9 2 0 LSVGS(0.003)VT(0.136)S(0.849)RPS(0.02)T(0.965)PT(0.026)LGTPTPQTMSVSTK 127.31 5.51E-06 427010000 94795 112890 98279 120150 157050 154660 184690 206440 122170 171540 TRUE FALSE FALSE 115881.8207 126091.5035 134636.4918 126713.4903 141413.5506 162757.7585 145229.4727 155810.2663 146688.3984 128778.235 0.899855637 0.979136758 1.045491048 0.983966664 1.098116857 1.263860764 1.127748589 1.209911491 1.139077566 1 16.97452926 -5.874953153 3.636902825 1.16189879 0.981250089 0.552995152 0.07198997 0.163356262 4.145988353 0.022266258 0.025814088 1.33E-06 5.874953153 -0.180648702 LSVGSVTSRPS(ph)TPTLGTPTPQTMSVSTK ddPTM_HeLa_A485_30min_R1 1 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 D6RIE8;Q16594 D6RIE8 TAF9 Transcription initiation factor TFIID subunit 9 1 0 LS(0.011)VGS(0.035)VT(0.105)S(0.098)RPS(0.37)T(0.37)PT(0.009)LGT(0.001)PTPQTMSVSTK 49.814 0.018205 346860000 54643 55071 58886 39836 97198 64266 108210 99456 68934 102140 TRUE FALSE FALSE 66798.14683 61511.0744 80670.38185 42012.13981 87520.62584 67630.86839 85090.04951 75064.26006 82768.4215 76678.37775 0.871147106 0.802195824 1.052061666 0.547900739 1.141399028 0.882007032 1.109700701 0.978949507 1.079423221 1 16.22653219 -5.810519664 24.99999139 1.027254709 0.83386454 0.377809808 0.13360386 123.8451061 63082.1569 0.038819572 0.044017343 1.55E-06 5.810519664 -0.193390168 LSVGSVTSRPS(ph)TPTLGTPTPQTMSVSTK ddPTM_HeLa_A486_30min_R1 2 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 D6RIE8;Q16594 D6RIE8 TAF9 Transcription initiation factor TFIID subunit 9 1 0 LSVGS(0.001)VT(0.02)S(0.086)RPS(0.444)T(0.444)PT(0.005)LGTPTPQTMSVSTK;LSVGS(0.001)VT(0.018)S(0.103)RPS(0.439)T(0.439)PT(0.002)LGTPTPQTMSVSTK ; 145.16 2.24E-09 719810000 302720 301399 211504 103795 302020 316640 390220 333660 248430 340040 TRUE FALSE FALSE 281500.8912 277515.0456 293404.0131 241640.0055 264137.8354 277576.1762 292582.8287 257692.9017 269964.1124 254891.7707 1.1043938 1.088756396 1.151092529 0.948010227 1.036274473 1.088996225 1.147870831 1.010989492 1.05913232 1 17.95952527 -8.266341421 0.009545307 6.84E-08 2.086791108 0.14590222 0.057446847 4724.084575 23.2224013 2583.733778 2490.285314 5.42E-09 8.266341421 2.086791039 LSVGSVTSRPST(ph)PTLGTPTPQTMSVSTK ddPTM_HeLa_A485_30min_R1 1 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 D6RIE8;Q16594 D6RIE8 TAF9 Transcription initiation factor TFIID subunit 9 1 0 LSVGS(0.002)VT(0.011)S(0.054)RPS(0.209)T(0.717)PT(0.007)LGTPTPQTMSVSTK 107.36 0.00043285 531390000 108940 129630 115150 109070 144390 128300 166130 165660 103340 157990 TRUE FALSE FALSE 133173.3272 144789.1009 157748.7768 115028.2179 130014.0246 135017.5896 130634.9683 125031.6253 124079.3901 118606.0006 1.12282116 1.220756961 1.330023574 0.969834725 1.096184206 1.138370647 1.101419555 1.054176219 1.046147661 1 16.85581748 -5.749249545 0.313261293 1.004199591 1.258966362 0.330669421 0.08214326 3.7098086 0.598406441 0.1076887 0.340863927 1.78E-06 5.749249545 0.25476677 LSVHDMKPLDS(ph)PGR ddPTM_HeLa_A485_30min_R1 3 LSVHDMKPLDSPGR 14 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR ;; 189.77 5.45E-18 1372620000 960130 1211800 1077670 720650 1713210 1231170 1674770 1753950 1227480 1430070 TRUE FALSE FALSE 1173707.606 1353509.469 1476344.979 760017.2847 1542636.797 1295632.157 1316941.708 1323791.012 1473823.977 1073579.867 1.093265291 1.260744086 1.375160827 0.707928034 1.436909208 1.206833508 1.226682567 1.233062441 1.372812607 1 20.03399809 LSVHDMKPLDS(ph)PGR ddPTM_HeLa_A486_30min_R1 4 LSVHDMKPLDSPGR 14 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR;LSVHDMKPLDS(1)PGR ;;; 206.59 2.99E-22 1130900000 589480 611410 420400 74791 741690 609920 718420 606900 594570 434620 TRUE FALSE FALSE 548160.4961 562959.6449 583190.1387 174117.2277 648660.3242 534674.2716 538663.7173 468722.1185 646107.8063 325788.3231 1.682566431 1.727992089 1.790089139 0.534448952 1.991048415 1.641170766 1.65341628 1.438732101 1.983213518 1 18.31357537 -9.76787965 5.738815529 0.99999995 1.591321494 0.176656342 0.390701656 64370315.14 109562950.7 27.35665988 0.092814766 1.71E-10 9.76787965 0.591321544 LSVHDMKPLDS(ph)PGRR ddPTM_HeLa_A485_30min_R1 4 LSVHDMKPLDSPGRR 15 2 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR ;;; 169.43 1.67E-12 5048520000 2586710 3338680 2987350 1727320 4702310 3299810 4495630 5076080 3049020 3361910 TRUE FALSE FALSE 3162114.715 3729109.583 4092495.079 1821679.118 4234131.506 3472582.949 3535101.925 3831163.421 3660930.347 2523847.708 1.252894422 1.477549367 1.621530121 0.721786466 1.677649365 1.375908276 1.400679571 1.517985181 1.450535361 1 21.26719343 -10.13604787 5.024379365 0.999982177 1.390665963 0.177398594 0.250938205 4.84E-05 8.33E-06 0.234839051 0.05695424 7.31E-11 10.13604787 0.390683786 LSVHDMKPLDS(ph)PGRR ddPTM_HeLa_A486_30min_R1 4 LSVHDMKPLDSPGRR 15 2 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR;LSVHDMKPLDS(1)PGRR ;;; 169.51 1.65E-12 5341530000 4337990 4748440 3656040 498434 5860210 4412140 5247420 5235040 4033640 2937070 TRUE FALSE FALSE 4033919.302 4372156.321 5071756.6 1160379.541 5125167.818 3867815.026 3934460.014 4043135.672 4383279.163 2201608.555 1.832260005 1.985891775 2.303659562 0.52705988 2.32791965 1.756813225 1.787084269 1.836446203 1.990943918 1 21.07012655 -10.00068611 4.703813146 0.999985197 1.810856177 0.212217055 0.471806159 152357476.9 1.172874717 26661.37132 0.110118332 9.98E-11 10.00068611 0.81087098 LSVILGLLKPDLYK ddPTM_HeLa_A486_30min_R1 1 LSVILGLLKPDLYK 14 1 E5RIH5;Q6NXR4 E5RIH5 TTI2 TELO2-interacting protein 2 0 0 107.99 0.00092764 3101200 16938 12538 6092.7 5847.5 9883.8 11890 17692 13766 9175.1 18179 FALSE FALSE TRUE 15750.73367 11544.44322 8451.956608 13613.27552 8644.081641 10423.13269 13265.27447 10631.78231 9970.405055 13626.86007 1.155859353 0.847182928 0.620242415 0.999003104 0.634341411 0.764896141 0.97346523 0.780207785 0.731672961 1 13.73416555 -4.276247362 4.615708535 0.805224866 1.173734357 0.371753628 0.132372473 0.172768939 9.675223579 0.031522948 0.200292425 5.29E-05 4.276247362 0.36850949 LSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_HeLa_A485_30min_R1 2 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 0 LS(0.009)VPT(0.992)S(0.999)DEEDEVPAPKPR;LS(0.007)VPT(0.995)S(0.998)DEEDEVPAPKPR ; 155.92 2.25E-07 259857000 259015 297790 247861 337700 365660 311230 434890 444910 240640 505600 TRUE FALSE FALSE 316631.9932 332613.9501 339555.0983 356147.6959 329253.6065 327525.5215 341972.1988 335795.1249 288934.2407 379563.2249 0.834200925 0.876307103 0.894594302 0.938309279 0.867453918 0.862901093 0.900962412 0.884688249 0.761228227 1 18.53398069 LSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_HeLa_A486_30min_R1 3 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 0 LSVPT(1)S(1)DEEDEVPAPKPR;LS(0.311)VPT(0.691)S(0.998)DEEDEVPAPKPR;LSVPT(1)S(1)DEEDEVPAPKPR ;; 207.55 3.32E-26 454100000 996210 1033450 629320 415077 1012210 1013280 1160250 1112260 839210 1215300 TRUE FALSE FALSE 926380.8234 951555.6582 873009.5578 966320.2328 885249.1833 888271.8159 869943.1781 859022.6785 911953.3985 910980.9697 1.016904693 1.044539557 0.958318106 1.060746893 0.971753761 0.975071758 0.954952087 0.94296446 1.001067452 1 19.79706139 -5.883595064 13.16330654 0.970386422 1.017447257 0.355134002 0.029892976 0.551661988 60.77810574 0.008878788 0.010068865 1.31E-06 5.883595064 0.047060835 LSVPTS(ph)DEEDEVPAPKPR ddPTM_HeLa_A485_30min_R1 6 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 LSVPT(0.037)S(0.963)DEEDEVPAPKPR;LSVPT(0.004)S(0.996)DEEDEVPAPKPR;LSVPT(0.005)S(0.995)DEEDEVPAPKPR;LSVPT(0.226)S(0.774)DEEDEVPAPKPR;LSVPT(0.029)S(0.971)DEEDEVPAPKPR;LSVPT(0.068)S(0.932)DEEDEVPAPKPR ;;;;; 284.65 7.66E-70 13824760000 3537531 3925163 3123973 3998240 5162999 4180410 5494060 5922010 3965596 6702200 TRUE FALSE FALSE 4324442.567 4384176.668 4279660.612 4216653.727 4648952.691 4399289.803 4320209.199 4469627.762 4761454.743 5031464.885 0.859479827 0.871351936 0.850579446 0.838056873 0.923975979 0.874355661 0.858638448 0.888335279 0.94633568 1 22.26254706 -7.90029485 1.995617016 0.999507754 0.868525942 0.801839945 0.021431223 0.132968508 1.144890902 0.021254644 0.006024458 1.26E-08 7.90029485 -0.130981812 LSVPTS(ph)DEEDEVPAPKPR ddPTM_HeLa_A486_30min_R1 7 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 LSVPT(0.053)S(0.947)DEEDEVPAPKPR;LSVPT(0.017)S(0.983)DEEDEVPAPKPR;LSVPT(0.15)S(0.85)DEEDEVPAPKPR;LSVPT(0.002)S(0.998)DEEDEVPAPKPR;LSVPT(0.011)S(0.989)DEEDEVPAPKPR;LSVPT(0.146)S(0.854)DEEDEVPAPKPR;LSVPT(0.028)S(0.972)DEEDEVPAPKPR ;;;;;; 264.96 2.09E-58 16250430000 6557590 6344580 4136900 2237283 6575140 6480450 7233480 7224150 5545870 7634860 TRUE FALSE FALSE 6097936.804 5841812.374 5738818.47 5208507.89 5750424.63 5680957.967 5423586.796 5579368.747 6026590.477 5723041.361 1.065506331 1.020753129 1.00275677 0.910094399 1.004784741 0.992646673 0.947675624 0.974895758 1.053039826 1 22.4483506 -4.531879888 2.153456288 0.981263019 1.066575998 0.32942758 0.035687878 0.451807952 3.465615257 0.009737396 0.059794221 2.94E-05 4.531879888 0.085312979 LSVPYVPQVTDEDRLS(ph)R ddPTM_HeLa_A485_30min_R1 5 LSVPYVPQVTDEDRLSR 17 1 A0A1B0GUZ7;Q14156-3;Q14156-2;Q14156 A0A1B0GUZ7 EFR3A Protein EFR3 homolog A 1 0 LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R ;;;; 193.59 1.48E-18 2060250000 963282 1024198 631756 940066 693974 1079225 1207970 1148010 864154 1927920 TRUE FALSE FALSE 1177560.758 1143969.047 865468.834 991419.4252 624879.5119 1135731.552 949877.3413 866458.7475 1037581.781 1447325.025 0.813611827 0.790402313 0.597978214 0.685001232 0.431747881 0.784710782 0.656298568 0.598662175 0.71689618 1 20.46495751 -8.035964625 20.90780735 1.000000003 0.666779231 0.455663913 0.107612947 561.3482128 326337.2496 0.105280053 0.027183193 9.21E-09 8.035964625 -0.333220773 LSVPYVPQVTDEDRLS(ph)R ddPTM_HeLa_A486_30min_R1 4 LSVPYVPQVTDEDRLSR 17 1 A0A1B0GUZ7;Q14156-3;Q14156-2;Q14156 A0A1B0GUZ7 EFR3A Protein EFR3 homolog A 1 0 LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVTDEDRLS(1)R ;;; 230.24 5.30E-35 1928110000 570972 675129 693175 162866 967630 660930 623062 572500 879440 963330 TRUE FALSE FALSE 530949.8113 621629.3193 961590.9239 379160.2788 846260.8226 579391.1764 467165.2975 442154.2476 955670.5673 722105.8978 0.735279705 0.860856172 1.331648068 0.525075726 1.171934512 0.802363169 0.646948459 0.612312195 1.323449331 1 19.4618509 -4.314358916 5.17212238 0.904633464 0.733430416 0.038035476 0.273066107 0.677506515 39.24942465 0.066241572 0.312086944 4.85E-05 4.314358916 -0.171203048 LSVQSNPS(ph)PQLR ddPTM_HeLa_A485_30min_R1 4 LSVQSNPSPQLR 12 0 O75152;E9PQ61;E9PBY7;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR;LSVQS(0.001)NPS(0.999)PQLR ;;; 225.36 3.60E-23 961617000 661475 882450 879389 779360 1097970 892910 1012620 1117700 806832 1036150 TRUE FALSE FALSE 808617.8317 985644.8512 1204711.586 821934.4634 988652.2516 939661.3869 796265.4647 843582.3225 968755.7817 777856.8739 1.039545781 1.267128805 1.548757395 1.056665424 1.27099507 1.20801322 1.023665781 1.084495555 1.245416495 1 19.5691452 -6.602904969 6.200299449 1.096190883 1.245106345 0.191808073 0.144263316 0.368717952 22.54247096 0.056263533 0.043370763 2.50E-07 6.602904969 0.148915462 LSVQSNPS(ph)PQLR ddPTM_HeLa_A486_30min_R1 4 LSVQSNPSPQLR 12 0 O75152;E9PQ61;E9PBY7;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR;LSVQSNPS(1)PQLR ;;; 232.22 7.23E-24 859987000 973320 1068160 872280 377258 1174240 938880 1202920 1195220 832350 1063650 TRUE FALSE FALSE 905095.2942 983515.1114 1210050.176 878275.6896 1026955.87 823050.5314 901936.6928 923094.4975 904498.7682 797305.1168 1.135193134 1.233549228 1.517675167 1.101555316 1.288033713 1.032290542 1.131231537 1.157768184 1.134444956 1 19.6047724 -6.030094404 1.882347201 1.105192996 1.272484909 0.297003016 0.11721045 0.457604433 3.255934993 0.044218753 0.047614517 9.33E-07 6.030094404 0.167291913 LSVYAALQR ddPTM_HeLa_A485_30min_R1 2 LSVYAALQR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 196.77 2.39E-11 88552000 47393 59719 61084 54608 83298 63613 72185 77856 52012 71337 FALSE FALSE TRUE 57935.40935 66702.61756 83681.51352 57591.09677 75004.55864 66943.67832 56762.08505 58761.69393 62450.33132 53553.99876 1.081812949 1.245520766 1.562563309 1.075383689 1.40054077 1.250022031 1.059903768 1.097241948 1.166118922 1 15.70870668 -6.697694709 5.574789154 1.0890361 1.280674191 0.306341754 0.138541649 0.255082121 15.1906781 0.053595419 0.040651871 2.01E-07 6.697694709 0.191638091 LSVYAALQR ddPTM_HeLa_A486_30min_R1 2 LSVYAALQR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 178.65 7.92E-08 71455000 46598 44990 42358 16853.2 54340 42218 50936 50356 43478 48124 FALSE FALSE TRUE 43331.72083 41424.82855 58760.15199 39235.10131 47524.1705 37009.5724 38191.27405 38891.03806 47246.70805 36073.43717 1.201208541 1.148347144 1.628903609 1.087645215 1.317428397 1.025950819 1.058709041 1.078107359 1.309736797 1 15.13864927 -6.255131267 24.84831164 1.097145527 1.278638598 0.252781227 0.156582499 696.2959088 2742786.213 0.051872274 0.050638573 5.56E-07 6.255131267 0.181493071 LSYLLMCLESAVHR ddPTM_HeLa_A486_30min_R1 1 LSYLLMCLESAVHR 14 0 H3BM42;Q92896;Q92896-3;Q92896-2 H3BM42 GLG1 Golgi apparatus protein 1 0 0 70.889 0.016677 2568100 1842.3 1492.4 1150.4 898.69 2230.3 2155.7 1985.3 1389.9 2288.7 2102.1 FALSE FALSE TRUE 1713.164284 1374.136789 1595.865689 2092.195737 1950.554977 1889.751652 1488.556942 1073.450111 2487.086359 1575.720478 1.087226007 0.872068878 1.012784762 1.327770862 1.237881341 1.199293706 0.944683377 0.681243994 1.578380426 1 10.62179592 -5.017895197 24.09562674 1.127362279 0.970342239 0.078748539 0.230846981 1225.255038 1649796.759 0.0628155 0.111876226 9.60E-06 5.017895197 -0.157020039 LSYLPATVEPAS(ph)PTPAHSLPR ddPTM_HeLa_A485_30min_R1 2 LSYLPATVEPASPTPAHSLPR 21 0 E9PCV4;M0R344;Q9NRA0-4;Q9NRA0-2;Q9NRA0;Q9NRA0-5 E9PCV4 SPHK2 Sphingosine kinase 2 1 0 LSYLPATVEPAS(0.93)PT(0.07)PAHSLPR;LSYLPATVEPAS(0.977)PT(0.023)PAHSLPR ; 155.8 4.12E-10 571400000 117449 157488 154079 119084 190117 146350 176600 178711 145373 176663 TRUE FALSE FALSE 143575.1249 175904.8516 211079.2339 125589.2574 171188.2839 154012.6597 138867.9673 134881.847 174548.0277 132624.1653 1.082571374 1.326340876 1.591559376 0.946956062 1.290777465 1.161271472 1.047078916 1.017023155 1.316110282 1 17.01698415 -5.27640791 24.9991623 1.118908472 1.332775609 0.284966666 0.160960167 1041.848872 1740004.733 0.045030313 0.067091153 5.29E-06 5.27640791 0.213867137 LSYLPATVEPAS(ph)PTPAHSLPR ddPTM_HeLa_A486_30min_R1 2 LSYLPATVEPASPTPAHSLPR 21 0 E9PCV4;M0R344;Q9NRA0-4;Q9NRA0-2;Q9NRA0;Q9NRA0-5 E9PCV4 SPHK2 Sphingosine kinase 2 1 0 LSYLPATVEPAS(0.964)PT(0.036)PAHSLPR;LSYLPATVEPAS(0.966)PT(0.034)PAHSLPR ; 169.6 7.39E-14 476610000 339450 367950 337640 96218 433930 331890 356820 393400 366370 356210 TRUE FALSE FALSE 315656.3079 338792.3019 468383.2503 224000.3666 379502.4532 290944.7862 267539.8619 303831.4079 398127.2466 267012.6975 1.182177143 1.268824686 1.754160962 0.838912788 1.421289912 1.089629029 1.001974305 1.137891234 1.491042375 1 18.02654882 -5.269582527 24.99218475 1.149708496 1.388431313 0.213402397 0.22922724 1006.224711 3088210.682 0.063296511 0.095699177 5.38E-06 5.269582527 0.238722817 LSYLSAPGSEYSMYS(ph)TDSR ddPTM_HeLa_A485_30min_R1 1 LSYLSAPGSEYSMYSTDSR 19 0 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LSYLSAPGS(0.023)EY(0.018)S(0.147)MY(0.013)S(0.266)T(0.266)DS(0.266)R 52.185 0.036293 88869000 56816 64976 61045 59383 84280 55822 74582 57625 65487 84852 TRUE FALSE FALSE 69454.52319 72574.37798 83628.08579 62626.94292 75888.78727 58744.7536 58646.94642 43492.3784 78629.64022 63699.95799 1.090338603 1.139315947 1.312843657 0.983155168 1.191347525 0.922210241 0.920674805 0.682769342 1.234375072 1 15.9590048 -6.268068517 24.62436382 0.930220769 1.143684306 0.290106993 0.147745595 507.8576284 1886464.215 0.049578421 0.044732449 5.39E-07 6.268068517 0.213463536 LSYPPHSVS(ph)PTDINTSLPPMSSFHR ddPTM_HeLa_A485_30min_R1 2 LSYPPHSVSPTDINTSLPPMSSFHR 25 0 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-2 Q99081 TCF12 Transcription factor 12 1 0 LS(0.001)YPPHS(0.126)VS(0.653)PT(0.22)DINTSLPPMSSFHR;LS(0.01)YPPHS(0.045)VS(0.881)PT(0.063)DINTSLPPMSSFHR ; 122.06 2.14E-05 550400000 300659 503370 523090 302923 573950 408542 545060 557700 391660 531173 TRUE FALSE FALSE 367539.5573 562234.7428 716602.7586 319470.9164 516805.5227 429932.6274 428603.4783 420923.2006 470262.5695 398761.3466 0.92170307 1.409952964 1.797071769 0.801158184 1.296027128 1.078170267 1.074837072 1.055576736 1.179308309 1 18.60516605 -5.278721468 24.97217983 1.081660203 1.379613725 0.272053073 0.229445244 1067.128615 1541971.736 0.06422215 0.095527599 5.26E-06 5.278721468 0.297953522 LSYPPHSVS(ph)PTDINTSLPPMSSFHR ddPTM_HeLa_A486_30min_R1 2 LSYPPHSVSPTDINTSLPPMSSFHR 25 0 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-2 Q99081 TCF12 Transcription factor 12 1 0 LS(0.036)Y(0.027)PPHS(0.158)VS(0.621)PT(0.158)DINT(0.001)SLPPMSSFHR;LS(0.049)YPPHS(0.233)VS(0.648)PT(0.07)DINTSLPPMSSFHR ; 96.515 0.0014094 455230000 292817 337930 343950 86771 429570 260653 295929 307973 314050 233429 TRUE FALSE FALSE 272292.0404 311151.1961 477136.6513 202007.2732 375689.325 228496.283 221884.4342 237854.2709 341272.1069 174976.859 1.556160294 1.778241979 2.726855734 1.154479937 2.14708006 1.305865726 1.268078736 1.359347014 1.950384232 1 17.41680461 -6.275801213 24.53344 1.392403274 1.874890653 0.242188343 0.438088396 975.9240826 1667105.765 0.151021275 0.133818054 5.30E-07 6.275801213 0.482487379 LT(ph)ELT(ph)QLY(ph)K ddPTM_HeLa_A486_30min_R1 1 LTELTQLYK 9 0 Q9BWW8 Q9BWW8 APOL6 Apolipoprotein L6 3 0 LT(1)ELT(1)QLY(1)K 42.041 0.027257 122090000 72859 124590 252890 11465 291590 53316 56353 93338 114970 21367 TRUE FALSE FALSE 67751.96034 114717.0347 350815.7806 26691.09941 255016.0632 46738.414 42252.88336 72086.97495 124935.6922 16016.56412 4.230118259 7.162399736 21.90331072 1.666468489 15.92202056 2.918129858 2.638074123 4.500776471 7.80040533 1 13.96727707 -6.295765389 24.90944583 3.919436866 10.18806448 0.246052598 5.603232422 904.1708469 656129.1626 1.926965284 1.699509306 5.06E-07 6.295765389 6.268627616 LT(ph)GMAFR ddPTM_HeLa_A486_30min_R1 1 LTGMAFR 7 0 P04406;P04406-2;E7EUT5;O14556 P04406 GAPDH;GAPDHS "Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific" 1 0 LT(1)GMAFR 107.57 0.015737 35784000 44988 45447 38611 22675 50964 49398 48599 53250 44323 52774 TRUE FALSE FALSE 41834.57352 41845.6142 53562.21324 52788.54593 44571.6199 43303.777 36439.01617 41126.13744 48164.95333 39559.0469 1.057522281 1.057801375 1.353981388 1.33442411 1.126711167 1.094661788 0.92112978 1.039613961 1.217545849 1 15.27172005 -6.168758121 3.143652649 1.046954848 1.202797011 0.257580375 0.115314533 0.383909844 7.309181815 0.044221123 0.043698102 6.78E-07 6.168758121 0.155842163 LT(ph)LLT(ph)LAEER ddPTM_HeLa_A485_30min_R1 2 LTLLTLAEER 10 0 A0A0D9SFD2;Q8N1K5-3;Q8N1K5-2;Q8N1K5;Q8N1K5-4 A0A0D9SFD2 THEMIS Protein THEMIS 2 0 LT(1)LLT(1)LAEER;LT(1)LLT(1)LAEER ; 71.03 0.019341 561680000 13910.6 9474.3 8220.9 11890.3 12133.2 8349.6 13728.4 14378.1 7411.1 19041.1 TRUE FALSE FALSE 17004.96498 10582.23697 11262.15301 12539.83698 10925.17601 8786.772145 10795.21519 10851.84843 8898.439791 14294.5042 1.189615586 0.740301085 0.787865942 0.877248823 0.764292056 0.614695832 0.755200393 0.759162282 0.62250776 1 13.80317296 -4.259815769 24.6404915 0.760071488 1.189615762 0.584711498 0.106094228 78.87224746 1196861.394 0.025536274 0.157331811 5.50E-05 4.259815769 0.429544274 LT(ph)LLT(ph)LAEER ddPTM_HeLa_A486_30min_R1 1 LTLLTLAEER 10 0 A0A0D9SFD2;Q8N1K5-3;Q8N1K5-2;Q8N1K5;Q8N1K5-4 A0A0D9SFD2 THEMIS Protein THEMIS 2 0 LT(1)LLT(1)LAEER 71.03 0.019341 208670000 5900.5 1953.2 1782.1 1163.4 3853.6 2843.9 3475.8 2986.7 2272.4 2333 TRUE FALSE FALSE 5486.90542 1798.421319 2472.176846 2708.453995 3370.245555 2493.048533 2606.118077 2306.693609 2469.373462 1748.801615 3.137523075 1.028373546 1.413640533 1.548748567 1.927174315 1.425575384 1.490230827 1.319013883 1.412037501 1 10.77215092 -4.253046246 24.95161162 1.431836472 3.13752395 0.812985596 0.250038891 446.1024905 1326170.64 0.062921283 0.704630876 5.58E-05 4.253046246 1.705687478 LT(ph)LRPPSLAAPYAPVQSWQHQPEK ddPTM_HeLa_A485_30min_R1 1 LTLRPPSLAAPYAPVQSWQHQPEK 24 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 LT(0.5)LRPPS(0.5)LAAPYAPVQSWQHQPEK 109.77 0.00031743 197110000 98804 91330 78532 62614 105200 81236 112530 132180 70560 105240 TRUE FALSE FALSE 120782.6089 102010.249 107584.2548 66034.44427 94725.91862 85489.39135 88487.04621 99762.64775 84720.74479 79005.6048 1.528785321 1.29117737 1.3617294 0.835819743 1.198977197 1.082067425 1.120009731 1.262728739 1.072338412 1 16.26966738 -5.072852142 13.4547809 1.099057411 1.389124088 0.581261012 0.121003815 1.246686443 229.3335683 0.032033812 0.055503403 8.46E-06 5.072852142 0.290066677 LT(ph)LRPPSLAAPYAPVQSWQHQPEK ddPTM_HeLa_A486_30min_R1 1 LTLRPPSLAAPYAPVQSWQHQPEK 24 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 LT(0.543)LRPPS(0.457)LAAPYAPVQSWQHQPEK 120.18 7.20E-05 232650000 65656 75485 55908 18851 79626 69401 85504 83466 57977 53090 TRUE FALSE FALSE 61053.85345 69503.29369 77557.07487 43886.08068 69638.5646 60839.01024 64109.99483 64462.61385 63002.49304 39795.91844 1.53417375 1.746493018 1.948870083 1.102778435 1.749892133 1.528775126 1.610969098 1.619829781 1.583139566 1 15.28033285 -11.47578733 0.444916398 5.13E-10 1.617012363 0.436485575 0.205581054 92.64595168 4.657369507 90.14355399 0.111602164 3.34E-12 11.47578733 1.617012362 LT(ph)PPPADLPLALPAHGLWSR ddPTM_HeLa_A485_30min_R1 2 LTPPPADLPLALPAHGLWSR 20 0 Q15742 Q15742 NAB2 NGFI-A-binding protein 2 1 0 LT(1)PPPADLPLALPAHGLWSR;LT(1)PPPADLPLALPAHGLWSR ; 188.23 4.71E-19 713170000 331140 309830 297950 398410 338210 281920 414620 299260 258660 617580 TRUE FALSE FALSE 404800.9506 346061.9233 408174.1037 420174.1295 304536.6249 296680.8953 326033.0499 225866.0158 310570.6894 463628.6717 0.873114575 0.746420453 0.880390124 0.906272962 0.656854598 0.639910587 0.703220206 0.487170077 0.669869463 1 18.82261026 -5.771717463 24.95526619 0.665068749 0.84610035 0.256515383 0.127070165 234.9496262 570457.8829 0.037512172 0.043005381 1.69E-06 5.771717463 0.181031601 LT(ph)PPPADLPLALPAHGLWSR ddPTM_HeLa_A486_30min_R1 2 LTPPPADLPLALPAHGLWSR 20 0 Q15742 Q15742 NAB2 NGFI-A-binding protein 2 1 0 LT(1)PPPADLPLALPAHGLWSR;LT(1)PPPADLPLALPAHGLWSR ; 167.99 2.26E-13 970530000 375460 420930 220333 73793 321470 345800 373550 351340 364880 469530 TRUE FALSE FALSE 349142.1929 387573.9738 305651.8383 171793.8333 281148.235 303138.7118 280083.839 271347.5517 396508.0922 351956.6319 0.992003449 1.101198099 0.868436082 0.4881108 0.798814995 0.861295638 0.79579077 0.770968714 1.126582244 1 18.42503815 -9.678964278 10.69925655 1.000000384 0.855711529 0.046674298 0.173649802 0 0 0.178580192 0.043312058 2.09E-10 9.678964278 -0.144288855 LT(ph)PVRPAAAS(ph)PIVSGAR ddPTM_HeLa_A485_30min_R1 2 LTPVRPAAASPIVSGAR 17 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 0 LT(1)PVRPAAAS(0.998)PIVS(0.002)GAR;LT(1)PVRPAAAS(1)PIVSGAR ; 130.15 1.15E-05 792700000 718270 688930 605360 821990 1032590 684740 912240 985120 659060 1099810 TRUE FALSE FALSE 878046.6835 769494.3706 829307.8551 866893.2323 929781.714 720591.9276 717332.4717 743517.7754 791327.2967 825647.6075 1.063464213 0.931988858 1.004433184 1.049955483 1.126124155 0.872759663 0.868811906 0.900526773 0.958432253 1 19.65516663 -6.280806725 24.98448585 0.91068315 1.028570852 0.48357088 0.058867848 739.6656563 954188.9362 0.02151093 0.018997038 5.24E-07 6.280806725 0.117887702 LT(ph)PVRPAAAS(ph)PIVSGAR ddPTM_HeLa_A486_30min_R1 4 LTPVRPAAASPIVSGAR 17 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 0 LT(1)PVRPAAAS(0.996)PIVS(0.004)GAR;LT(1)PVRPAAAS(0.997)PIVS(0.003)GAR;LT(1)PVRPAAAS(1)PIVSGAR;LT(1)PVRPAAAS(1)PIVSGAR ;;; 129.29 1.23E-05 1283370000 1099820 1134640 819500 495141 1301350 1236560 1460810 1383550 959630 1441860 TRUE FALSE FALSE 1022728.297 1044726.994 1136832.347 1152713.271 1138122.548 1084005.8 1095299.887 1068545.868 1042811.501 1080808.871 0.946261938 0.966615858 1.051834767 1.066528321 1.053028504 1.002957904 1.013407566 0.988653865 0.964843581 1 20.04367999 -9.735599989 13.55157338 0.999999694 1.00898305 0 0.039030877 0 0 0.041883696 0.010158288 1.84E-10 9.735599989 0.008983356 LT(ph)PVSPESSSTEEK ddPTM_HeLa_A485_30min_R1 3 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LT(0.979)PVS(0.021)PESSSTEEK;LT(1)PVSPESSSTEEK;LT(0.995)PVS(0.005)PESSSTEEK ;; 173.06 1.22E-11 495458000 397689 250054 210880 928180 458185 350420 622730 527640 351070 1211470 TRUE FALSE FALSE 486153.546 279295.6401 288893.2874 978884.1231 412566.4926 368767.4493 489678.6483 398235.4627 421526.5288 909472.8245 0.534544335 0.307096191 0.31764917 1.076320366 0.453632568 0.405473852 0.538420319 0.437875055 0.463484469 1 19.794671 -10.49554916 3.376630487 1.009816364 0.504116367 0.344583371 0.205286343 248634327.2 333894270.8 22782687.52 0.052557424 3.19E-11 10.49554916 -0.505699997 LT(ph)PVSPESSSTEEK ddPTM_HeLa_A486_30min_R1 1 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LT(1)PVSPESSSTEEK 97.273 0.0043115 270420000 195640 360140 126420 171460 244730 407160 507510 408800 274840 477070 TRUE FALSE FALSE 181926.6463 331601.1948 175373.2096 399167.5451 214033.6814 356928.7389 380525.6301 315725.164 298663.3525 357608.5668 0.508731231 0.927274192 0.490405505 1.116213598 0.598513854 0.998098961 1.064084212 0.882879196 0.835168338 1 18.44802177 -3.37930849 0.390420983 0.955601868 1.88E-14 0.284288971 0.18473115 15.63656846 1.108553393 0.140218032 8.018880952 0.000417534 3.37930849 -0.955601868 LT(ph)QCVLMVQS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 LTQCVLMVQSPSK 13 0 B1ANH7 B1ANH7 IBA57-AS1 Putative uncharacterized protein IBA57-AS1 2 0 LT(1)QCVLMVQS(1)PSK;LT(1)QCVLMVQS(1)PSK ; 74.786 0.0043124 337920000 577000 724620 701410 318118 785570 625830 654930 630090 658660 431570 TRUE FALSE FALSE 705351.6594 809358.0056 960890.7471 335495.9808 707355.8925 658597.4911 514998.8552 475559.4396 790847.0204 323987.5415 2.177095009 2.498114594 2.965826225 1.03552124 2.183281151 2.032786471 1.589563762 1.46783249 2.440979727 1 18.30557881 -1.000000005 0.06229516 1.97E-10 6.135189607 0.302187271 0.514011119 400.1628498 1.861821378 35.9237357 220.7725159 0.099999999 1.000000005 6.135189606 LT(ph)QCVLMVQS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 LTQCVLMVQSPSK 13 0 B1ANH7 B1ANH7 IBA57-AS1 Putative uncharacterized protein IBA57-AS1 2 0 LT(1)QCVLMVQS(1)PSK;LT(1)QCVLMVQS(0.999)PS(0.001)K ; 73.208 0.0047796 320750000 659550 984870 775550 46376 911230 714410 642150 691230 785340 290060 TRUE FALSE FALSE 613318.9509 906825.3144 1075863.73 107965.6717 796935.0365 626273.3578 481477.278 533852.0184 853413.9035 217427.088 2.820802856 4.170709927 4.948158667 0.496560354 3.665297842 2.880383321 2.214430973 2.455315128 3.925057872 1 17.73017216 -5.230662945 24.99953948 2.505272745 3.998972229 0.301933581 1.104923035 895.3168237 727260.2075 0.289151888 0.500754984 5.88E-06 5.230662945 1.493699485 LT(ph)QTSSTEQLNVLETETEVLNK ddPTM_HeLa_A485_30min_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LT(0.423)QT(0.249)S(0.149)S(0.09)T(0.09)EQLNVLETETEVLNK 219.91 9.24E-36 101600000 40956 40879 34941 63566 53165 40074 53930 42483 40917 74647 TRUE FALSE FALSE 50066.5209 45659.44345 47867.12992 67038.44962 47871.70593 42172.21267 42407.41493 32063.97764 49128.66659 56038.87668 0.893424777 0.814781562 0.854177185 1.196284679 0.854258843 0.752552784 0.756749911 0.572173811 0.876688997 1 15.77414042 -6.000830883 24.99946358 0.767235084 0.937219165 0.189527831 0.139804828 46.05534619 1385781.099 0.044110836 0.049424225 9.98E-07 6.000830883 0.169984081 LT(ph)QTSSTEQLNVLETETEVLNK ddPTM_HeLa_A486_30min_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LT(0.419)QT(0.249)S(0.15)S(0.091)T(0.091)EQLNVLETETEVLNK 170.53 6.08E-14 161340000 70303 97195 47203 30039 78912 82358 98672 92756 65793 99880 TRUE FALSE FALSE 65375.12275 89492.91422 65481.26574 69932.31009 69014.12113 72197.50731 73983.22195 71637.48365 71495.99021 74869.39789 0.873188841 1.195320341 0.874606549 0.934057333 0.921793457 0.964312648 0.98816371 0.95683264 0.95494277 1 16.19208853 LTAEAIQT(ph)PLK ddPTM_HeLa_A485_30min_R1 1 LTAEAIQTPLK 11 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 LTAEAIQT(1)PLK 126.09 0.00028541 51398000 127120 99446 83634 147150 147320 120260 146130 123930 96837 204290 TRUE FALSE FALSE 155397.4054 111075.3446 114573.6969 155188.4319 132652.3035 126556.6276 114908.1317 93535.97319 116271.2977 153364.2627 1.013256953 0.724258329 0.747069069 1.011894357 0.864949247 0.825202856 0.749249726 0.609894193 0.758138145 1 17.22660282 -6.629839487 3.444707369 0.746786853 0.863575523 0.083259966 0.126661399 0.476783508 11.07603579 0.051575305 0.038652196 2.35E-07 6.629839487 0.11678867 LTAEAIQT(ph)PLK ddPTM_HeLa_A486_30min_R1 2 LTAEAIQTPLK 11 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 LTAEAIQT(1)PLK;LTAEAIQT(1)PLK ; 122.97 0.00034234 123209000 373620 454250 298550 203710 428920 464360 633720 526520 354550 540690 TRUE FALSE FALSE 347431.1674 418253.5756 414156.5554 474247.1749 375120.8541 407071.9845 475156.5532 406642.8899 385282.6795 405297.7047 0.857224611 1.031966307 1.021857639 1.170120554 0.925543988 1.00437772 1.172364284 1.003319005 0.950616485 1 18.62862248 -4.260785316 6.073586941 1.035860164 0.852559527 0.311933273 0.077219015 0.159372636 29.43852639 0.019295302 0.120547002 5.49E-05 4.260785316 -0.183300637 LTAGVPDT(ph)PTR ddPTM_HeLa_A485_30min_R1 1 LTAGVPDTPTR 11 0 P16144-4;P16144-2;P16144-3;P16144 P16144-4 ITGB4 Integrin beta-4 1 0 LTAGVPDT(0.999)PT(0.001)R 100.07 0.0067039 146480000 265370 306260 225960 314250 308800 275010 340520 394750 317240 504510 TRUE FALSE FALSE 324400.641 342074.4429 309552.007 331416.6818 278054.7877 289409.0984 267765.1202 297936.9436 380907.1581 378744.9418 0.856514781 0.903178908 0.817309943 0.875039229 0.734147858 0.764126636 0.706980056 0.7866427 1.005708898 1 18.5308671 -7.7640575 24.99702906 1.002854577 0.80442009 0.64692579 0.058317254 47.62537632 454668.7092 0.054525054 0.016573551 1.72E-08 7.7640575 -0.198434487 LTAGVPDT(ph)PTR ddPTM_HeLa_A486_30min_R1 1 LTAGVPDTPTR 11 0 P16144-4;P16144-2;P16144-3;P16144 P16144-4 ITGB4 Integrin beta-4 1 0 LTAGVPDT(0.996)PT(0.004)R 96.745 0.0089628 204080000 1401500 1495800 1174600 230460 2163200 1198100 1260600 1160400 1675200 761210 TRUE FALSE FALSE 1303262.087 1377267.36 1629436.577 536522.5268 1891871.285 1050290.603 945184.5467 896202.2514 1820407.685 570598.0614 2.284028243 2.413725972 2.855664411 0.940281019 3.315593608 1.840683792 1.656480473 1.570636692 3.19035028 1 19.12211532 -10.89771375 2.662685454 0.359403989 2.199864688 0.209160762 0.715231604 134884611.9 123418594.2 548537676.3 0.180113979 1.27E-11 10.89771375 1.840460699 LTAIIEEAEEAPGARPQLQDAWR ddPTM_HeLa_A485_30min_R1 1 LTAIIEEAEEAPGARPQLQDAWR 23 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 156.92 5.31E-10 17781000 5283 6848.9 10091 6167.8 7176.1 7082.7 8176.3 8877.1 8008 8792.8 FALSE FALSE TRUE 6458.185124 7649.819277 13824.08082 6504.731296 6461.622287 7453.53922 6429.366711 6699.977306 9615.132146 6600.916779 0.978376995 1.158902548 2.094266794 0.985428466 0.978897705 1.129167276 0.974011175 1.015007086 1.456635869 1 12.68845069 LTAS(ph)PSDPK ddPTM_HeLa_A486_30min_R1 1 LTASPSDPK 9 0 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 LT(0.041)AS(0.911)PS(0.048)DPK 73.951 0.012281 238470000 991900 882570 498220 423150 885880 1138400 1280200 1184200 734780 1462400 TRUE FALSE FALSE 922372.9322 812631.9389 691144.1268 985114.5848 774764.6699 997955.7824 959880.4194 914583.5109 798471.322 1096205.521 0.841423359 0.741313488 0.630487726 0.89865866 0.706769538 0.910372884 0.875639103 0.834317555 0.72839564 1 20.06408688 -6.263301073 24.9627309 0.859758262 0.762578789 0.242619988 0.092808562 272.771637 3657467.75 0.031395861 0.029122971 5.45E-07 6.263301073 -0.097179473 LTASEQAHPQEPAESAHEPRLS(ph)AEYEK ddPTM_HeLa_A485_30min_R1 3 LTASEQAHPQEPAESAHEPRLSAEYEK 27 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LTASEQAHPQEPAES(0.073)AHEPRLS(0.917)AEY(0.009)EK;LTASEQAHPQEPAES(0.004)AHEPRLS(0.995)AEYEK;LTASEQAHPQEPAESAHEPRLS(1)AEYEK ;; 179.1 2.81E-20 4126880000 1065590 1473490 918720 705260 1218290 1152560 1458300 1488400 1010460 1254230 TRUE FALSE FALSE 1302626.819 1645801.838 1258592.759 743786.568 1096992.77 1212906.259 1146722.292 1123367.566 1213250.054 941573.5434 1.383457329 1.74792702 1.33669087 0.789939961 1.16506329 1.288169435 1.217878624 1.193074693 1.288534562 1 19.84471426 -4.996929809 22.88351797 1.146876873 1.55984686 0.531229647 0.162173028 24.79405788 184776.4418 0.042625174 0.087770093 1.01E-05 4.996929809 0.412969987 LTASEQAHPQEPAESAHEPRLS(ph)AEYEK ddPTM_HeLa_A486_30min_R1 4 LTASEQAHPQEPAESAHEPRLSAEYEK 27 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LTASEQAHPQEPAESAHEPRLS(1)AEYEK;LTASEQAHPQEPAESAHEPRLS(1)AEYEK;LTASEQAHPQEPAES(0.03)AHEPRLS(0.968)AEY(0.002)EK;LTASEQAHPQEPAESAHEPRLS(1)AEYEK ;;; 206.11 1.06E-28 6341950000 3775910 3432810 1842840 166903 2371520 2465990 3075960 2678520 2594930 2365090 TRUE FALSE FALSE 3511238.208 3160781.634 2556437.001 388558.6188 2074061.848 2161761.226 2306322.274 2068679.468 2819860.622 1772856.07 1.980554579 1.78287549 1.4419879 0.219170989 1.169898608 1.219366458 1.300907791 1.166862614 1.590575044 1 20.75764398 -4.868947702 3.75357805 1.102737451 1.891259771 0.461415272 0.33619789 0.20145973 5.318657519 0.093568054 0.220282043 1.35E-05 4.868947702 0.78852232 LTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_HeLa_A485_30min_R1 3 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LT(0.009)AT(0.984)PT(0.007)PLGGMTGFHMQTEDR;LT(0.001)AT(0.82)PT(0.179)PLGGMTGFHMQTEDR;LTAT(0.997)PT(0.003)PLGGMTGFHMQTEDR ;; 271.04 2.35E-72 1314040000 478080 659480 665590 563360 827480 625040 723120 776290 628010 808890 TRUE FALSE FALSE 584427.2466 736600.4493 911819.4385 594134.9303 745093.1857 657766.1279 568619.5047 585903.6603 754045.8466 607248.6095 0.962418419 1.213012986 1.50155871 0.97840476 1.226998587 1.083190834 0.936386672 0.964849736 1.241741578 1 19.21192776 -6.445250713 5.014937978 1.029741862 1.184557496 0.148263179 0.159341557 0.413156128 18.5811362 0.058511023 0.05059815 3.59E-07 6.445250713 0.154815635 LTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_HeLa_A486_30min_R1 1 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LT(0.017)AT(0.971)PT(0.012)PLGGMTGFHMQTEDR 249.12 8.04E-47 336170000 105450 113720 95181 21824 119640 92104 100600 112830 97738 89994 TRUE FALSE FALSE 98058.49954 104708.413 132037.6322 50807.37492 104633.6356 80741.14492 75428.81596 87141.07206 106210.0085 67458.91664 1.453603236 1.552180472 1.957304369 0.753160256 1.551071983 1.19689359 1.11814449 1.291765068 1.574439879 1 16.04172153 -5.246345236 24.96928052 1.233929179 1.644144425 0.380211704 0.257554679 893.4026807 1477897.156 0.067724392 0.116725147 5.67E-06 5.246345236 0.410215247 LTATPT(ph)PLGGMTGFHMQTEDR ddPTM_HeLa_A486_30min_R1 1 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LT(0.007)AT(0.409)PT(0.584)PLGGMTGFHMQTEDR 240.26 2.94E-46 601000000 156330 157730 119880 40795 167990 139470 159410 143680 142610 158100 TRUE FALSE FALSE 145372.0743 145230.9004 166300.7465 94972.82167 146919.1278 122263.6094 119523.9319 110967.2005 154971.5496 118510.7309 1.226657478 1.225466244 1.403254753 0.80138584 1.239711599 1.031666993 1.008549445 0.93634728 1.307658373 1 16.85465817 -5.240387955 24.99714712 1.049676387 1.279160157 0.37076409 0.142366562 880.9900677 1046115.322 0.03677842 0.063617504 5.75E-06 5.240387955 0.22948377 LTDCVVMRDPASK(ac)R ddPTM_HeLa_A485_30min_R1 2 LTDCVVMRDPASKR 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 ; LTDCVVMRDPASK(1)R;LTDCVVMRDPASK(1)R 142.57 4.89E-05 67095000 69385 105345 154107 86251 130273 124547 181555 216510 127820 160910 FALSE TRUE FALSE 84819.45387 117664.1814 211117.5922 90962.67373 117302.5627 131068.0883 142764.2911 163410.583 153472.3016 120798.0983 0.702158851 0.97405657 1.7476897 0.75301412 0.971062991 1.085017812 1.181842207 1.35275791 1.270486073 1 16.88223822 -6.802898684 3.403531571 1.238100665 1.049940743 0.07204136 0.279258242 0.678229505 16.13827687 0.127197278 0.085645271 1.57E-07 6.802898684 -0.188159922 LTDCVVMRDPASK(ac)R ddPTM_HeLa_A486_30min_R1 1 LTDCVVMRDPASKR 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 LTDCVVMRDPASK(1)R 132.23 0.00029249 65480000 49899 59718 63775 24812 80433 55946 74416 75321 55417 80139 FALSE TRUE FALSE 46401.33778 54985.72819 88470.38795 57763.58993 70344.34313 49043.95134 55796.32971 58172.05255 60220.59018 60071.67278 0.772432923 0.915335393 1.472747201 0.961577849 1.171006897 0.816423933 0.928829299 0.968377437 1.002478995 1 15.87439722 -6.255619115 24.94837206 0.940345984 1.068275618 0.092892428 0.178925461 1172.322871 5025130.616 0.061776255 0.060181018 5.55E-07 6.255619115 0.127929634 LTDCVVMRDPASKR ddPTM_HeLa_A485_30min_R1 1 LTDCVVMRDPASKR 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 59.607 0.025074 922970000 526150 677070 492110 440470 771540 827980 1018900 1304000 496040 594690 FALSE FALSE TRUE 643190.2523 756247.4468 674161.9674 464531.7608 694722.7686 871331.7525 801203.6914 984191.9554 595590.6781 446444.7275 1.440694027 1.693932978 1.510068158 1.040513488 1.556122686 1.951712494 1.794631322 2.2045102 1.334074839 1 18.76812205 -6.006597393 24.87059491 1.742320205 1.428516475 0.067180573 0.347231327 546.231816 2059173.876 0.106502624 0.116501072 9.85E-07 6.006597393 -0.31380373 LTDDHVQFLIYQILR ddPTM_HeLa_A486_30min_R1 2 LTDDHVQFLIYQILR 15 0 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;E7EX54;B5TY33;B4E0K5 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 0 0 ; ; 132.05 1.38E-05 17925200 11208.8 12725.6 10248.8 5998.8 15415.4 11207.5 13414.3 13546.6 10509.4 12147 FALSE FALSE TRUE 10423.121 11717.17711 14217.40983 13965.50956 13481.85679 9824.8326 10057.90026 10462.3349 11420.36325 9105.312136 1.144729675 1.28685068 1.561441236 1.533776037 1.480658388 1.079022054 1.104618942 1.14903638 1.254252801 1 13.15249276 -6.264174187 24.99646152 1.125902858 1.411357559 0.549981611 0.128225435 210.2870824 1922039.274 0.048140277 0.044351352 5.44E-07 6.264174187 0.285454701 LTDEDFS(ph)PFGSGGGLFSGGK ddPTM_HeLa_A485_30min_R1 1 LTDEDFSPFGSGGGLFSGGK 20 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 LTDEDFS(1)PFGSGGGLFSGGK 299.46 5.63E-87 83897000 180880 149640 130540 220180 194840 116710 174760 159760 132300 254200 TRUE FALSE FALSE 221116.132 167139.0963 178832.1782 232207.8759 175441.0455 122820.7551 137421.0983 120578.6095 158851.3965 190832.6182 1.158691497 0.875841341 0.937115363 1.21681439 0.919345168 0.643604622 0.720113258 0.631855343 0.832412184 1 17.54194826 -6.038083918 6.333871298 0.742848097 1.032236502 0.489621964 0.134373821 0.164591104 19.22707614 0.043157837 0.044239088 9.16E-07 6.038083918 0.289388405 LTDEDFS(ph)PFGSGGGLFSGGK ddPTM_HeLa_A486_30min_R1 2 LTDEDFSPFGSGGGLFSGGK 20 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 LTDEDFS(1)PFGSGGGLFSGGK;LTDEDFS(1)PFGSGGGLFSGGK ; 191.47 2.33E-19 313730000 603650 651380 319930 213635 541800 611930 635910 629710 490340 667660 TRUE FALSE FALSE 561337.2523 599762.2765 443815.464 497353.0765 473842.3919 536436.2982 476798.592 486338.7795 532843.066 500473.5903 1.121612135 1.198389462 0.886790977 0.993764878 0.946788005 1.071857354 0.95269481 0.97175713 1.06467769 1 18.93293442 -4.748828043 24.9999999 0.985780521 1.160000866 0.621733895 0.054275244 138.0434956 273644.7857 0.013328656 0.034753182 1.78E-05 4.748828043 0.174220345 LTDEDFSPFGS(ph)GGGLFSGGK ddPTM_HeLa_A485_30min_R1 1 LTDEDFSPFGSGGGLFSGGK 20 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 LTDEDFS(0.011)PFGS(0.895)GGGLFS(0.094)GGK 91.475 0.00055484 23559000 26557 21540 16621 31083 26658 19156 25768 22173 21044 32951 TRUE FALSE FALSE 32464.51303 24058.91563 22769.79956 32780.98558 24003.83592 20158.97854 20262.45629 16735.03698 25267.33777 24736.92212 1.312390963 0.972591316 0.920478281 1.325184493 0.970364696 0.814934794 0.819117924 0.676520583 1.021442266 1 14.59437838 -5.997436778 24.92259003 0.848721354 1.111284645 0.405544587 0.150408958 78.39566051 762235.7714 0.046333873 0.052230891 1.01E-06 5.997436778 0.262563291 LTDEDFSPFGS(ph)GGGLFSGGK ddPTM_HeLa_A486_30min_R1 3 LTDEDFSPFGSGGGLFSGGK 20 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 LTDEDFS(0.003)PFGS(0.96)GGGLFS(0.037)GGK;LTDEDFSPFGS(1)GGGLFSGGK;LTDEDFS(0.001)PFGS(0.999)GGGLFSGGK ;; 269.16 2.60E-59 64413000 151043 172045 91254 62746 134777 144878 154427 158846 117351 165215 TRUE FALSE FALSE 140455.6657 158411.5276 126589.9927 146075.859 117872.0119 127004.4254 115787.7312 122680.2334 127523.0792 123844.0886 1.134132983 1.279120622 1.022172266 1.179514183 0.951777458 1.025518673 0.934947582 0.990602254 1.02970663 1 16.91816548 -5.429775287 1.142020862 0.985311165 1.191434442 0.534891704 0.070486519 0.370522907 0.963097943 0.025267035 0.055416621 3.72E-06 5.429775287 0.206123277 LTDLDK(ac)AQLLEIAK ddPTM_HeLa_A485_30min_R1 1 LTDLDKAQLLEIAK 14 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 0 1 LTDLDK(1)AQLLEIAK 147.18 3.55E-05 21627000 14467 11817 12147 16345 17823 13289 18114 16701 14987 25760 FALSE TRUE FALSE 17685.13424 13198.89536 16640.68078 17237.88596 16048.47954 13984.79149 14243.79592 12605.05356 17994.75343 19338.50608 0.914503642 0.682518872 0.860494638 0.891376298 0.829871732 0.723157799 0.736550996 0.651811133 0.930514144 1 14.23918873 -7.965539799 9.193146086 0.99997702 0.78660812 0.433199448 0.083788995 0.230080836 56.36889376 0.082765647 0.021388584 1.08E-08 7.965539799 -0.2133689 LTDLDK(ac)AQLLEIAK ddPTM_HeLa_A486_30min_R1 2 LTDLDKAQLLEIAK 14 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 0 1 ; LTDLDK(1)AQLLEIAK;LTDLDK(1)AQLLEIAK 166.38 1.01E-06 41262000 62453 69606 46839 26274 61801 78567 76870 76656 59359 75720 FALSE TRUE FALSE 58075.36721 64090.16706 64976.31519 61167.19981 54049.34231 68874.20235 57636.31295 59203.10219 64504.28591 56759.21915 1.023188269 1.129158717 1.144771126 1.077661052 0.952256622 1.213445206 1.015452887 1.043057024 1.13645478 1 15.79256712 -11.06958242 2.52691865 0.877335821 1.081827638 0.102427461 0.072569122 9216492.77 4385141.775 6514927.733 0.017444975 8.52E-12 11.06958242 0.204491817 LTDPHRAPS(ph)DTGS(ph)LS(ph)PPWDQDRR ddPTM_HeLa_A486_30min_R1 1 LTDPHRAPSDTGSLSPPWDQDRR 23 2 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 3 0 LTDPHRAPS(0.951)DT(0.219)GS(0.831)LS(0.999)PPWDQDRR 95.823 0.0013811 94494000 56957 60773 63933 17078 82464 48017 53346 48981 60632 57289 TRUE FALSE FALSE 52964.60843 55957.12615 88689.56979 39758.44707 72120.59617 42093.15074 39998.26656 37829.09555 65887.63058 42943.46151 1.233356757 1.303041818 2.065263644 0.925832378 1.679431365 0.980199296 0.931416918 0.880904664 1.534287835 1 15.39015087 -6.277912479 24.68033927 1.049546707 1.439717547 0.249630076 0.325383834 986.2046108 1477547.49 0.111595917 0.098715596 5.27E-07 6.277912479 0.39017084 LTEGCS(ph)FR ddPTM_HeLa_A485_30min_R1 3 LTEGCSFR 8 0 P42677;C9J1C5;H0YMV8;Q71UM5 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 1 0 LTEGCS(1)FR;LTEGCS(1)FR;LTEGCS(1)FR ;; 93.096 0.0034274 327256000 489860 670640 639330 465258 942420 689100 606260 844360 977310 988300 TRUE FALSE FALSE 598827.667 749065.5142 875844.7717 490673.8664 848589.3558 725180.2104 476727.5983 637279.3861 1173447.153 741934.9983 0.807116079 1.009610702 1.180487204 0.66134347 1.143751619 0.977417445 0.642546314 0.858942343 1.581603719 1 19.50093327 -7.736002749 24.99905888 1.290802253 0.915293331 0.33578411 0.214048375 215.1654314 211465.1316 0.140259408 0.052970047 1.84E-08 7.736002749 -0.375508922 LTEGCS(ph)FR ddPTM_HeLa_A486_30min_R1 2 LTEGCSFR 8 0 P42677;C9J1C5;H0YMV8;Q71UM5 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 1 0 LTEGCS(1)FR;LTEGCS(1)FR ; 82.417 0.0073288 239976000 490540 492230 415410 208521 726540 449420 605250 563900 474690 483970 TRUE FALSE FALSE 456155.6792 453223.9021 576267.8771 485447.4261 635410.5785 393975.1298 453810.0483 435512.2799 515836.5114 362780.7619 1.257386629 1.249305227 1.588474191 1.338128912 1.751500204 1.085986831 1.250920931 1.200483393 1.421895992 1 18.46873843 -6.313151701 24.9999568 1.208079131 1.429462281 0.327430509 0.174704356 468.1393647 226317.2806 0.060887008 0.053697344 4.86E-07 6.313151701 0.22138315 LTEVPVEPVLTVHPES(ph)K ddPTM_HeLa_A485_30min_R1 2 LTEVPVEPVLTVHPESK 17 0 Q9H307 Q9H307 PNN Pinin 1 0 LTEVPVEPVLTVHPES(1)K;LTEVPVEPVLTVHPES(1)K ; 141.07 3.66E-07 138662000 128201 120642 99823 183651 188587 136752 204343 200261 116836 253400 TRUE FALSE FALSE 156718.8702 134750.0325 136751.6817 193683.3891 169810.6161 143912.1233 160683.4487 151146.6758 140283.9135 190232.0435 0.82383003 0.708345608 0.718867753 1.018142819 0.892649908 0.756508318 0.844670781 0.794538465 0.73743577 1 17.53740075 -11.37979264 2.174049153 2.256662533 0.812314472 0.291138261 0.088644 10281930.67 799534.6071 63829622.04 0.026096021 4.17E-12 11.37979264 -1.444348061 LTEVPVEPVLTVHPES(ph)K ddPTM_HeLa_A486_30min_R1 2 LTEVPVEPVLTVHPESK 17 0 Q9H307 Q9H307 PNN Pinin 1 0 LTEVPVEPVLTVHPES(1)K;LTEVPVEPVLTVHPES(1)K ; 205.68 2.37E-25 122370000 240268 230499 122273 130607 229225 265546 327940 311630 183264 365670 TRUE FALSE FALSE 223426.4539 212233.4198 169620.3802 304059.6965 200473.4631 232785.6344 245885.9434 240678.6518 199149.4711 274103.8519 0.815116068 0.774281056 0.618817937 1.109286478 0.731377767 0.849260719 0.897053951 0.878056438 0.72654751 1 18.06436308 -14 0.154579543 1.582796296 0.778328647 0.144101835 0.124615142 271.8963291 2.456574256 49.490291 0.574322788 1.00E-14 14 -0.804467648 LTFDSSFS(ph)PNTGKK ddPTM_HeLa_A485_30min_R1 1 LTFDSSFSPNTGKK 14 1 C9JI87;P21796 C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 1 0 LTFDSSFS(0.999)PNTGKK 141.86 6.27E-08 3542800000 3468500 2243200 1035900 4483700 2270600 3333300 5161900 4461800 1919300 9392400 TRUE FALSE FALSE 4240055.859 2505522.727 1419122.517 4728633.178 2044531.091 3507826.434 4059017.896 3367536.554 2304485.905 7051047.534 0.601337012 0.355340496 0.201264069 0.670628464 0.289961326 0.497490113 0.575661684 0.477593796 0.326828871 1 22.74940618 -10.61585666 2.94058722 1.041292874 0.442831101 0.579713652 0.142017853 66468249.36 69062220.17 21128493.7 0.034815885 2.42E-11 10.61585666 -0.598461774 LTFDSSFS(ph)PNTGKK ddPTM_HeLa_A486_30min_R1 2 LTFDSSFSPNTGKK 14 1 C9JI87;P21796 C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 1 0 LTFDSS(0.001)FS(0.987)PNT(0.013)GKK;LTFDSS(0.003)FS(0.995)PNT(0.002)GKK ; 130.95 1.11E-05 3323724000 1725060 1643885 900807 913209 1809720 1944440 2581220 2297190 2045480 3178400 TRUE FALSE FALSE 1604142.202 1513617.566 1249623.595 2125996.703 1582728.043 1704554.762 1935371.455 1774169.984 2222783.853 2382507.952 0.673299831 0.635304308 0.524499234 0.892335617 0.664311757 0.715445571 0.812325286 0.744664874 0.932959679 1 21.1840496 -7.493649091 0.287168413 1.045386866 0.593296004 0.599344662 0.088992189 1.15696582 0.358613251 0.193187971 0.175229207 3.21E-08 7.493649091 -0.452090862 LTFDT(ph)TFSPNTGK ddPTM_HeLa_A486_30min_R1 1 LTFDTTFSPNTGK 13 0 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 0 LTFDT(0.638)T(0.292)FS(0.07)PNTGK 89.231 0.0023595 0 136140 169040 101230 68674 155010 185020 202890 183610 208730 202970 TRUE FALSE FALSE 126597.289 155644.6548 140428.967 159876.5426 135567.2004 162194.1135 152124.776 141806.0112 226822.8845 152144.9909 0.832083188 1.023002163 0.92299435 1.050816998 0.891039525 1.066049645 0.999867134 0.932045218 1.490833731 1 17.21508731 -7.727394304 24.99993218 1.245417763 0.970248716 0.426967622 0.129940214 135.1814349 99266.5216 0.079059703 0.029878246 1.87E-08 7.727394304 -0.275169047 LTFDTTFS(ph)PNTGK ddPTM_HeLa_A485_30min_R1 2 LTFDTTFSPNTGK 13 0 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 0 LTFDTT(0.009)FS(0.991)PNTGK;LTFDTT(0.007)FS(0.987)PNT(0.006)GK ; 152 5.00E-08 142716000 365290 277960 181050 510220 256370 280150 434430 387470 265190 981680 TRUE FALSE FALSE 446547.5003 310465.0041 248027.9291 538092.0267 230844.9026 294818.2208 341610.4815 292442.375 318411.2005 736965.2425 0.605927491 0.421274961 0.336553089 0.730145732 0.313237164 0.400043589 0.463536761 0.396819766 0.432057283 1 19.49123705 -10.25080678 3.595762288 1.001106661 0.451776428 0.654354021 0.118691017 124467546.2 191530643.9 1509555.475 0.028487005 5.61E-11 10.25080678 -0.549330232 LTFDTTFS(ph)PNTGK ddPTM_HeLa_A486_30min_R1 3 LTFDTTFSPNTGK 13 0 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 0 LTFDT(0.025)T(0.018)FS(0.955)PNT(0.002)GK;LTFDTTFS(1)PNTGK;LTFDTT(0.086)FS(0.914)PNTGK ;; 241.39 5.58E-35 365062000 423570 517110 342090 206772 518220 574100 622870 565810 693880 715340 TRUE FALSE FALSE 393879.9303 476132.3203 474556.4095 481375.6657 453220.0154 503273.379 467021.338 436987.4145 754026.0771 536214.2079 0.734557057 0.887951705 0.885012748 0.897730158 0.845221944 0.938567781 0.870960394 0.814949339 1.406203092 1 19.03244992 -7.744483137 24.99999804 1.203101613 0.865009893 0.632144273 0.104813846 119.078411 175568.708 0.064915203 0.024396058 1.80E-08 7.744483137 -0.33809172 LTFDTTFS(ph)PNTGKK ddPTM_HeLa_A485_30min_R1 2 LTFDTTFSPNTGKK 14 1 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 0 LTFDTTFS(1)PNTGKK;LTFDTT(0.001)FS(0.997)PNT(0.002)GKK ; 170.16 2.29E-12 2900900000 914490 625650 301460 1260290 592920 858320 1341540 1428330 496010 2349100 TRUE FALSE FALSE 1117915.146 698814.3251 412982.5988 1329136.451 533886.8029 903260.308 1054909.02 1078029.828 595554.6573 1763512.602 0.633913897 0.396262734 0.234181825 0.75368696 0.302740566 0.512193849 0.598186267 0.611296923 0.337709329 1 20.75002045 -11.30142324 2.319990067 3.568594862 0.48673724 0.487261852 0.157968716 11157091.83 1489003.167 150493716.6 0.041019745 5.00E-12 11.30142324 -3.081857622 LTFDTTFS(ph)PNTGKK ddPTM_HeLa_A486_30min_R1 2 LTFDTTFSPNTGKK 14 1 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 0 LTFDTTFS(1)PNTGKK;LTFDTTFS(1)PNTGKK ; 225.01 4.13E-28 2351400000 969690 988120 478190 564340 1086290 1275770 1567980 1397600 1318730 1925550 TRUE FALSE FALSE 901719.7385 909817.7725 663357.9744 1313812.04 950037.3789 1118378.468 1175654.82 1079396.989 1433038.578 1443379.747 0.624727997 0.630338464 0.459586589 0.910233113 0.658203346 0.774833145 0.814515253 0.74782606 0.992835448 1 20.46101949 -6.48411251 0.270134208 1.037618669 0.492441855 0.583899374 0.106664441 1.912324101 0.344185792 0.184368933 0.364075517 3.28E-07 6.48411251 -0.545176814 LTGIKHELQANCYEEVKDR ddPTM_HeLa_A485_30min_R1 2 LTGIKHELQANCYEEVKDR 19 2 P23528;E9PP50;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 ; ; 160.13 1.27E-14 556673000 478897 436639 313081 709443 738453 594371 1049951 1128815 491701 1073907 FALSE FALSE TRUE 585425.9855 487700.1328 428902.6903 748198.0747 664930.0265 625491.3465 825620.3915 851971.3513 590380.8806 806201.7487 0.726153207 0.604935593 0.532004168 0.928053153 0.824768772 0.775849652 1.02408658 1.056771897 0.732299181 1 19.62078139 -5.269424355 24.7755768 0.904456869 0.619421447 0.58898641 0.109072451 367.2835891 1139597.926 0.031452389 0.047613372 5.38E-06 5.269424355 -0.285035422 LTGIKHELQANCYEEVKDR ddPTM_HeLa_A486_30min_R1 2 LTGIKHELQANCYEEVKDR 19 2 P23528;E9PP50;E9PK25;G3V1A4 P23528 CFL1 Cofilin-1 0 0 ; ; 160.67 2.17E-12 969010000 682210 631680 381600 489930 881890 923640 1328070 1249120 521880 1382090 FALSE FALSE TRUE 634390.6019 581623.3763 529365.7396 1140581.8 771275.1329 809690.6877 995772.8391 964722.6441 567116.9786 1036005.668 0.612342791 0.561409454 0.510967996 1.10094166 0.744469993 0.781550442 0.961165435 0.931194369 0.547407216 1 19.98260047 -5.234928932 24.99287374 0.859107002 0.561556967 0.475252349 0.146764875 659.8587907 622084.7655 0.03873805 0.067071434 5.82E-06 5.234928932 -0.297550035 LTGMAFR ddPTM_HeLa_A485_30min_R1 4 LTGMAFR 7 0 P04406;P04406-2;E7EUT5;O14556 P04406 GAPDH;GAPDHS "Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific" 0 0 ;;; ;;; 154.09 0.002764 614748000 620570 735970 831570 622220 971120 868970 1016490 1121090 688270 915860 FALSE FALSE TRUE 758613.6556 822035.2894 1139202.348 656210.3031 874431.883 914467.9255 799308.6075 846140.9197 826399.4758 687552.9572 1.103353055 1.195595599 1.656893968 0.954414196 1.271802956 1.330032714 1.162541153 1.230655633 1.201943017 1 19.39111131 -9.29879252 0.470025136 0.959880192 1.254714888 0.148785502 0.170542566 12.83075395 2.921111379 1.052855587 0.09132718 5.03E-10 9.29879252 0.294834696 LTGMAFR ddPTM_HeLa_A486_30min_R1 1 LTGMAFR 7 0 P04406;P04406-2;E7EUT5;O14556 P04406 GAPDH;GAPDHS "Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific" 0 0 114.19 0.016166 77314000 96517 124950 124030 39774 165460 123000 125080 143880 111240 129990 FALSE FALSE TRUE 89751.65671 115048.5069 172057.7376 92595.88207 144706.4639 107825.5106 93783.66104 111121.6649 120882.3728 97439.65791 0.921099875 1.180715423 1.765787579 0.950289482 1.485087972 1.106587532 0.962479375 1.140415179 1.240586999 1 16.57222145 -6.484333997 24.83078735 1.088566098 1.269870485 0.112405183 0.239481609 1137.359408 732695.4593 0.083840266 0.073924832 3.28E-07 6.484333997 0.181304387 LTGS(ph)QLS(ph)ITQVASIK ddPTM_HeLa_A485_30min_R1 1 LTGSQLSITQVASIK 15 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 2 0 LT(0.093)GS(0.907)QLS(0.794)IT(0.206)QVASIK 88.133 0.0027491 27094000 85584 73156 55070 74543 90619 60423 96683 91026 54018 91209 TRUE FALSE FALSE 104621.8655 81710.95783 75442.68465 78615.09534 81596.65418 63586.65485 76025.88722 68701.73078 64858.91712 68472.27488 1.527944934 1.1933437 1.10179901 1.148130327 1.191674358 0.9286482 1.110316363 1.003351077 0.947228893 1 16.06323232 -1 0.568746214 1.022164432 25.3594884 0.79530018 0.074672507 66.4568462 0.573760264 0.036398128 1989.272053 0.1 1 24.33732397 LTGS(ph)QLS(ph)ITQVASIK ddPTM_HeLa_A486_30min_R1 3 LTGSQLSITQVASIK 15 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 2 0 LTGS(1)QLS(0.915)IT(0.085)QVASIK;LT(0.088)GS(0.912)QLS(0.996)IT(0.004)QVASIK;LT(0.063)GS(0.937)QLS(0.997)IT(0.003)QVASIK ;; 254.82 6.78E-50 144416000 290030 399920 259340 184768 390290 367940 465130 424030 242220 328820 TRUE FALSE FALSE 269700.3947 368228.8827 359763.3934 430149.2417 341336.1889 322547.3037 348749.5544 327487.6255 263215.8246 246481.3317 1.094202116 1.49394228 1.459596923 1.745159516 1.384835868 1.308607437 1.41491265 1.328650828 1.067893551 1 17.91111886 -7.728104231 2.011469691 0.991009487 1.428783881 0.490830409 0.153026257 0.270799215 2.068888497 0.146812604 0.043163296 1.87E-08 7.728104231 0.437774394 LTGS(ph)QLSIT(ph)QVASIK ddPTM_HeLa_A485_30min_R1 1 LTGSQLSITQVASIK 15 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 2 0 LTGS(1)QLS(0.264)IT(0.736)QVASIK 146.76 1.90E-07 38595000 72329 68544 50648 73187 86740 55906 83115 87164 46574 86756 TRUE FALSE FALSE 88418.33652 76559.62455 69384.80284 77185.02049 78103.86104 58833.15171 65356.80126 65786.89233 55920.9746 65129.32583 1.357581019 1.175501567 1.065338877 1.185103938 1.199211876 0.903328124 1.003492673 1.01009632 0.858614363 1 15.99101967 -6.254694767 24.90005114 0.958761463 1.187453134 0.695544395 0.079737749 317.4894196 1172122.03 0.027248965 0.02665864 5.56E-07 6.254694767 0.228691671 LTGS(ph)QLSITQVASIK ddPTM_HeLa_A485_30min_R1 2 LTGSQLSITQVASIK 15 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 LT(0.003)GS(0.997)QLSITQVASIK;LTGS(0.999)QLS(0.001)ITQVASIK ; 269.86 2.21E-51 644520000 344810 328500 276430 332610 389910 313840 397470 424520 252620 406890 TRUE FALSE FALSE 421511.7949 366915.2174 378692.9602 350779.6421 351089.1913 330272.1771 312547.2875 320405.8044 303318.5168 305459.8113 1.37992554 1.201189826 1.239747247 1.148365936 1.149379324 1.081229559 1.023202647 1.048929491 0.992989931 1 18.22062305 -2.588044188 0.259767626 0.973164222 2.202609818 0.92441578 0.032084414 5.447229839 0.153408493 0.039852421 2.503757242 0.002581997 2.588044188 1.229445596 LTGS(ph)QLSITQVASIK ddPTM_HeLa_A486_30min_R1 1 LTGSQLSITQVASIK 15 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 LT(0.002)GS(0.998)QLSITQVASIK 258.75 2.46E-50 249300000 342880 394550 261100 155090 420610 400630 478600 406930 356980 404370 TRUE FALSE FALSE 318845.8826 363284.4211 362204.9125 361057.3578 367853.1718 351204.3439 358849.2179 314280.9222 387923.3138 303113.12 1.051903932 1.198511041 1.194949636 1.191163741 1.213583799 1.158657678 1.18387887 1.036843678 1.279797172 1 18.20949677 -10.63735954 7.764230455 0.999743441 1.167807561 0.346246131 0.069129763 0.000290554 1.36E-05 0.063346746 0.015340711 2.30E-11 10.63735954 0.16806412 LTGS(ph)T(ph)SSLNK ddPTM_HeLa_A485_30min_R1 1 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 2 0 LT(0.011)GS(0.926)T(0.701)S(0.242)S(0.119)LNK 87.719 0.0093702 786780000 2294700 2125700 2051100 3218100 2710600 2325800 3146100 2637200 2202200 4074900 TRUE FALSE FALSE 2805148.098 2374282.124 2809887.243 3393896.654 2440723.147 2447575.292 2473910.034 1990422.565 2644161.34 3059102.423 0.91698404 0.776136852 0.918533235 1.109441982 0.797855975 0.800095895 0.808704545 0.650655745 0.864358552 1 21.54467698 LTGS(ph)T(ph)SSLNK ddPTM_HeLa_A486_30min_R1 3 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 2 0 LT(0.072)GS(0.867)T(0.722)S(0.243)S(0.095)LNK;LTGS(0.748)T(0.732)S(0.328)S(0.192)LNK;LT(0.002)GS(0.962)T(0.506)S(0.261)S(0.269)LNK ;; 142.97 1.59E-05 2221140000 7206400 7605500 4146680 3192850 6804800 8258600 9836500 8939200 5736560 10497800 TRUE FALSE FALSE 6701268.574 7002812.481 5752385.548 7433116.158 5951278.532 7239737.899 7375303.66 6903939.301 6233809.64 7869082.551 0.851594647 0.889914731 0.731010955 0.944597558 0.756286199 0.920023122 0.937250767 0.877349965 0.792190144 1 22.90776401 LTGS(ph)TSSLNK ddPTM_HeLa_A485_30min_R1 5 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 1 0 LTGS(0.368)T(0.368)S(0.251)S(0.013)LNK;LTGS(0.921)T(0.074)S(0.004)S(0.001)LNK;LTGS(0.483)T(0.483)S(0.03)S(0.003)LNK;LT(0.011)GS(0.33)T(0.253)S(0.253)S(0.153)LNK;LTGS(0.916)T(0.069)S(0.015)SLNK ;;;; 200.76 9.21E-14 3404060000 4170860 4535290 3327370 4975640 5402380 5217510 6712300 7046600 4109850 7114000 TRUE FALSE FALSE 5098653.418 5065652.714 4558302.626 5247446.614 4864500.078 5490690.756 5278162.271 5318410.301 4934659.197 5340610.723 0.954694825 0.948515624 0.853517109 0.982555533 0.910850899 1.028101661 0.98830687 0.995843093 0.923987808 1 22.3485733 -6.247237929 24.95634397 0.987054268 0.929721679 0.340683291 0.039799752 929.2362628 1632957.51 0.012981021 0.012922366 5.66E-07 6.247237929 -0.057332589 LTGS(ph)TSSLNK ddPTM_HeLa_A486_30min_R1 4 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 1 0 LT(0.002)GS(0.901)T(0.028)S(0.035)S(0.035)LNK;LTGS(0.921)T(0.07)S(0.008)S(0.001)LNK;LTGS(0.932)T(0.063)S(0.005)SLNK;LTGS(0.483)T(0.483)S(0.035)SLNK ;;; 221.44 5.52E-17 2017080000 3101560 3221040 1893360 1195815 3232490 3026380 3714950 3413560 2521820 3699560 TRUE FALSE FALSE 2884156.66 2965793.06 2626519.698 2783917.753 2827040.962 2653016.006 2785430.217 2636366.905 2740413.388 2773166.096 1.04002305 1.069461026 0.947119504 1.003877033 1.019427205 0.956674037 1.004422426 0.950670394 0.988189417 1 21.4031026 -4.750323839 24.99999816 0.983793254 1.054742065 0.573390434 0.024477599 145.5346317 327316.0987 0.006046036 0.015669965 1.78E-05 4.750323839 0.070948811 LTGST(ph)SSLNK ddPTM_HeLa_A486_30min_R1 2 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 1 0 LTGS(0.075)T(0.56)S(0.171)S(0.194)LNK;LTGS(0.037)T(0.563)S(0.268)S(0.132)LNK ; 121.02 0.0010689 970490000 2528250 2219660 1297980 1037920 2197230 2585100 3156400 3038200 1847500 3332000 TRUE FALSE FALSE 2351032.731 2043766.058 1800592.617 2416330.214 1921632.925 2266176.645 2366635.335 2346468.183 2007642.788 2497645.512 0.941299604 0.818277072 0.720916002 0.967443219 0.769377766 0.907325173 0.947546529 0.939472064 0.803814143 1 21.2521373 -6.490353291 22.96991789 0.919060158 0.841763973 0.178832987 0.081950757 430.485725 304015.1314 0.028134839 0.024782729 3.23E-07 6.490353291 -0.077296185 LTGSTS(ph)SLNK ddPTM_HeLa_A485_30min_R1 2 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 1 0 LTGS(0.002)T(0.145)S(0.592)S(0.262)LNK;LTGS(0.014)T(0.299)S(0.502)S(0.185)LNK ; 140.24 1.45E-05 1216300000 1616910 1582110 1178000 2297750 2159360 2034280 2668100 2778200 1789350 3417300 TRUE FALSE FALSE 1976586.051 1767124.002 1613791.221 2423270.264 1944366.536 2140791.755 2098038.639 2096842.094 2148456.132 2565430.001 0.770469688 0.688821758 0.629052915 0.94458639 0.757910579 0.834476776 0.817811688 0.817345277 0.837464336 1 21.29076923 -13.99999982 0.048208342 1.903442221 0.327585905 0.50009574 0.073267611 503.2856109 1.79376085 59.31237788 13.95675421 1.00E-14 13.99999982 -1.575856316 LTGSTSS(ph)LNK ddPTM_HeLa_A485_30min_R1 1 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 1 0 LTGS(0.001)T(0.037)S(0.027)S(0.935)LNK 150.51 3.68E-06 538570000 1440300 1422700 991620 1935400 2008600 1613000 2114000 2023800 1578800 2958100 TRUE FALSE FALSE 1760689.766 1589072.389 1358461.503 2041126.001 1808616.731 1697454.186 1662326.63 1527459.877 1895650.678 2220700.11 0.79285346 0.715572707 0.611726679 0.919136264 0.814435377 0.764377945 0.74855971 0.687828073 0.853627498 1 21.08258315 -8.031445471 5.837246341 0.999952368 0.758285609 0.492394921 0.076588054 0.171730848 23.69395286 0.076565249 0.019882385 9.30E-09 8.031445471 -0.241666759 LTGSTSS(ph)LNK ddPTM_HeLa_A486_30min_R1 3 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2;Q9NV70 EXOC1 Exocyst complex component 1 1 0 LTGS(0.001)T(0.011)S(0.081)S(0.907)LNK;LTGS(0.224)T(0.224)S(0.111)S(0.441)LNK;LTGS(0.003)T(0.027)S(0.237)S(0.734)LNK ;; 193.3 9.71E-15 1140540000 3907070 3495580 1862050 1721350 3627770 4232190 5009790 4804770 2891970 5441730 TRUE FALSE FALSE 3633204.569 3218577.51 2583085.627 4007389.792 3172741.259 3710065.428 3756287.554 3710828.758 3142648.288 4079085.388 0.890690982 0.789043916 0.633251178 0.98242361 0.777807022 0.909533651 0.920865144 0.909720784 0.77042964 1 21.95981428 -5.276005856 24.95744649 0.888761084 0.772800197 0.280546472 0.091102921 1040.806291 1783261.233 0.025088745 0.037398813 5.30E-06 5.276005856 -0.115960887 LTGVFAPRPSTGPHK ddPTM_HeLa_A485_30min_R1 1 LTGVFAPRPSTGPHK 15 1 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 122.96 3.51E-05 13590000 18662 23228 25910 17302 34569 22258 32273 27413 26806 31025 FALSE FALSE TRUE 22813.29752 25944.31254 35495.18721 18247.16445 31127.18898 23423.39446 25377.6099 20689.91877 32185.71832 23291.03847 0.979488207 1.113918238 1.52398474 0.783441428 1.336444874 1.0056827 1.089586878 0.888321008 1.381892798 1 14.50748735 LTGVFAPRPSTGPHK ddPTM_HeLa_A486_30min_R1 1 LTGVFAPRPSTGPHK 15 1 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 0 0 103.88 0.00076682 8364800 28905 23380 20193 2206.5 29370 14968 24731 23879 24207 16734 FALSE FALSE TRUE 26878.90877 21527.28365 28012.27039 5136.84351 25686.14074 13121.40034 18543.04222 18442.27297 26305.28225 12543.69748 2.142821828 1.716183261 2.233174902 0.409515896 2.047732798 1.046055229 1.478275624 1.470242168 2.097091571 1 13.61467505 LTIAFQAK ddPTM_HeLa_A485_30min_R1 1 LTIAFQAK 8 0 E9PLT0;O75534-2;O75534;O75534-3;O75534-4 E9PLT0 CSDE1 Cold shock domain-containing protein E1 0 0 143.61 0.0004365 0 63950 67944 59353 59861 85143 71245 91655 90105 47602 85533 FALSE FALSE TRUE 78175.45688 75889.45977 81310.14458 63131.05485 76665.86396 74975.27803 72072.1605 68006.60747 57155.28477 64211.19722 1.217473903 1.18187268 1.2662923 0.983178286 1.193964095 1.167635573 1.122423559 1.059108231 0.890113987 1 15.97053728 -7.423185711 2.266322489 0.947165983 1.163923186 0.572047725 0.074806113 0.232545104 2.214401573 0.057825888 0.020884417 3.77E-08 7.423185711 0.216757203 LTIQEHLYPAPS(ph)SPEKEQLLDR ddPTM_HeLa_A485_30min_R1 1 LTIQEHLYPAPSSPEKEQLLDR 22 1 Q5VUB5 Q5VUB5 FAM171A1 Protein FAM171A1 1 0 LTIQEHLYPAPS(0.5)S(0.5)PEKEQLLDR 95.212 0.00066163 156980000 171310 128200 76182 269080 160230 151400 250180 180570 140900 546760 TRUE FALSE FALSE 209417.3185 143191.8748 104364.892 283779.1591 144276.9386 159327.0699 196726.9992 136284.9244 169177.3376 410462.7944 0.510198053 0.3488547 0.254261515 0.691363902 0.351498213 0.388164462 0.479280953 0.332027473 0.412162417 1 18.64689193 -10.34012826 3.062538022 1.005554954 0.416143711 0.698346251 0.114614838 22888839.18 29521794.83 1147692.283 0.028323667 4.57E-11 10.34012826 -0.589411242 LTLEGLEEDDDDRVS(ph)PTVLHK ddPTM_HeLa_A486_30min_R1 1 LTLEGLEEDDDDRVSPTVLHK 21 1 Q9NPB8 Q9NPB8 GPCPD1 Glycerophosphocholine phosphodiesterase GPCPD1 1 0 LTLEGLEEDDDDRVS(0.75)PT(0.25)VLHK 234.37 2.05E-46 194650000 46341 63893 38137 22297 60528 64660 77970 72671 52611 58728 TRUE FALSE FALSE 43092.73521 58829.88599 52904.66774 51908.54283 52936.01384 56682.90661 58461.08132 56125.3997 57171.36384 44022.12654 0.978888086 1.336370834 1.201774469 1.179146645 1.202486522 1.287600374 1.327993123 1.274936131 1.298696095 1 15.42594122 -6.126009525 5.284395412 1.260364217 1.188028875 0.039138542 0.118673915 0.637537944 24.82174047 0.037456835 0.037617916 7.48E-07 6.126009525 -0.072335343 LTLHGLQQYYVK ddPTM_HeLa_A485_30min_R1 1 LTLHGLQQYYVK 12 0 O00148;O00148-2;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A140T9X9;A0A140TA18;F6UJC5;A0A140T996;H0Y400;H0YCC6 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 133.05 0.00025855 14847000 23048 25254 26587 25523 31420 26219 26196 23819 26280 40070 FALSE FALSE TRUE 28174.94809 28207.23562 36422.63768 26917.25686 28291.71448 27591.7863 20599.0106 17977.3529 31554.15495 30081.28643 0.9366271 0.937700443 1.210807183 0.894817345 0.940508796 0.917240902 0.684778247 0.597625801 1.04896295 1 14.87657865 -6.199194354 1.745967532 0.805483927 1.005077181 0.166669836 0.149557714 0.524551022 3.164283502 0.061808887 0.058999807 6.32E-07 6.199194354 0.199593255 LTLHGLQQYYVK ddPTM_HeLa_A486_30min_R1 1 LTLHGLQQYYVK 12 0 O00148;O00148-2;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A140T9X9;A0A140TA18;F6UJC5;A0A140T996;H0Y400;H0YCC6 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 97.121 0.0033812 20075000 21169 25761 19004 6918.4 25141 23117 24502 23228 22456 25300 FALSE FALSE TRUE 19685.16242 23719.60454 26362.85774 16106.38484 21987.58135 20265.05958 18371.34044 17939.49146 24402.50416 18964.71532 1.037988817 1.250722942 1.390100368 0.849281656 1.159394221 1.068566505 0.968711638 0.945940456 1.286731899 1 14.2110301 -5.255825908 24.99966129 1.040770498 1.228715917 0.276742785 0.138116892 609.2332708 2713219.749 0.037085338 0.062008178 5.55E-06 5.255825908 0.187945418 LTLLQVAS(ph)R ddPTM_HeLa_A485_30min_R1 2 LTLLQVASR 9 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 LTLLQVAS(1)R;LTLLQVAS(1)R ; 139.76 0.00014074 200465000 160910 171265 168588 132531 231591 172488 192426 210563 142233 189911 TRUE FALSE FALSE 196703.8744 191292.9519 230955.7167 139770.8329 208532.9869 181519.205 151312.6131 158922.0941 170777.8585 142569.6828 1.379703388 1.341750562 1.619949714 0.980368549 1.462674131 1.273196387 1.06132391 1.114697676 1.197855359 1 17.1213077 -6.381852814 0.382035654 1.014959706 1.463407502 0.380868633 0.157218044 1.62333413 0.509141483 0.171351682 0.27503026 4.15E-07 6.381852814 0.448447797 LTLLQVAS(ph)R ddPTM_HeLa_A486_30min_R1 4 LTLLQVASR 9 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 LTLLQVAS(1)R;LTLLQVAS(1)R;LTLLQVAS(1)R;LTLLQVAS(1)R ;;; 138.42 0.00015519 428008000 378583 440882 385510 172186 540058 434401 478944 476498 376317 379419 TRUE FALSE FALSE 352046.2867 405944.9047 534789.7963 400857.7098 472318.8898 380809.0213 359107.1454 368009.8073 408936.4606 284410.0128 1.237812562 1.427322831 1.880347991 1.409435996 1.660697122 1.338943793 1.262638899 1.293941109 1.437841293 1 18.11761273 -6.43771754 5.647473428 1.276361196 1.530642736 0.321306756 0.188015912 0.299585658 15.402024 0.067507219 0.058842738 3.65E-07 6.43771754 0.25428154 LTLNS(ph)PIFDKPLSR ddPTM_HeLa_A485_30min_R1 2 LTLNSPIFDKPLSR 14 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;E5RIY8;E5RIU4 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 LTLNS(1)PIFDKPLSR;LTLNS(1)PIFDKPLSR ; 203.89 3.18E-22 5869200000 5896700 6358600 5291300 6415500 8185900 6797800 8763200 9132900 5971300 8647500 TRUE FALSE FALSE 7208400.572 7102182.958 7248772.059 6765962.52 7370883.054 7153722.297 6890870.731 6893041.955 7169685.138 6491837.395 1.110379101 1.094017383 1.116597909 1.042226123 1.135407837 1.101956482 1.061466933 1.061801388 1.104415391 1 22.63019543 -14 0.195509606 0.593591593 1.106728488 0.527936691 0.026635436 110.1823484 1.084963878 17.43183855 0.067161002 1.00E-14 14 0.513136895 LTLNS(ph)PIFDKPLSR ddPTM_HeLa_A486_30min_R1 3 LTLNSPIFDKPLSR 14 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;E5RIY8;E5RIU4 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 LTLNS(1)PIFDKPLSR;LTLNS(1)PIFDKPLSR;LTLNS(1)PIFDKPLSR ;; 211.09 1.20E-22 4639290000 6905910 7355640 5361140 2494370 7695000 6867960 8072700 7881290 5553230 7945460 TRUE FALSE FALSE 6421841.371 6772752.298 7437116.984 5807019.418 6729821.347 6020660.924 6052825.076 6086892.314 6034588.448 5955865.1 1.078238218 1.137156766 1.248704741 0.975008554 1.129948586 1.01087933 1.016279747 1.021999695 1.013217786 1 22.50587965 -5.273756212 24.99351987 1.028379519 1.152945599 0.546451745 0.054491906 573.7145396 1164189.494 0.015280894 0.022851141 5.32E-06 5.273756212 0.124566081 LTLS(ph)EGHPET(ph)PVDGDLGK ddPTM_HeLa_A486_30min_R1 1 LTLSEGHPETPVDGDLGK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 2 0 LT(0.462)LS(0.539)EGHPET(1)PVDGDLGK 93.006 4.09E-05 0 62312 76204 48476 23694 72994 92010 84335 72318 62687 101720 TRUE FALSE FALSE 57944.25058 70165.31751 67247.20543 55160.82943 63838.41188 80658.74169 63233.491 55852.77009 68120.75963 76248.64991 0.759938053 0.920217179 0.881946179 0.723433523 0.837239898 1.057838293 0.829306369 0.732508315 0.89340283 1 16.21842417 -6.026780529 24.97313112 0.888670004 0.826215055 0.130365962 0.097900068 2072.127024 1932276.45 0.033776007 0.033882585 9.40E-07 6.026780529 -0.06245495 LTLSEGHPET(ph)PVDGDLGK ddPTM_HeLa_A485_30min_R1 2 LTLSEGHPETPVDGDLGK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LTLSEGHPET(1)PVDGDLGK;LT(0.001)LSEGHPET(0.999)PVDGDLGK ; 147.53 5.30E-08 223670000 711950 563350 506260 695480 719170 555390 749440 564130 590720 1196000 TRUE FALSE FALSE 870320.8213 629228.882 693546.6412 733472.3114 647566.9096 584469.3616 589316.0216 425776.233 709272.0856 897859.2107 0.969328833 0.700810188 0.772444759 0.816912387 0.721234356 0.650958808 0.656356826 0.474212692 0.789959135 1 19.77612971 -4.259573168 23.63014357 0.713774595 0.969329027 0.224071525 0.129098767 108.1593352 1369274.921 0.031614716 0.197373131 5.50E-05 4.259573168 0.255554432 LTLSEGHPET(ph)PVDGDLGK ddPTM_HeLa_A486_30min_R1 3 LTLSEGHPETPVDGDLGK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LTLSEGHPET(1)PVDGDLGK;LTLSEGHPET(1)PVDGDLGK;LTLSEGHPET(1)PVDGDLGK ;; 145.9 6.00E-08 390606000 673580 686490 440980 76589 626110 743850 805760 707630 691500 705180 TRUE FALSE FALSE 626365.5204 632090.0322 611739.2659 178303.0626 547577.4456 652081.3499 604150.3255 546518.0965 751439.7768 528598.338 1.184955523 1.19578513 1.15728564 0.337312946 1.035904592 1.233604616 1.142928916 1.03390052 1.421570449 1 19.01181236 -6.008931866 24.93403318 1.163464037 0.959519202 0.119492503 0.254629696 978.1050061 2730466.96 0.085629531 0.09230928 9.80E-07 6.008931866 -0.203944835 LTLT(ph)SDESTLIEDGGAR ddPTM_HeLa_A485_30min_R1 2 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 LTLT(0.984)S(0.015)DESTLIEDGGAR;LT(0.005)LT(0.948)S(0.047)DESTLIEDGGAR ; 168.32 2.37E-11 133352000 45121 40890 47071 53317 53446 40281 49665 40058 48373 73852 TRUE FALSE FALSE 55158.01078 45671.7298 64484.52169 56229.5727 48124.72858 42390.05087 39053.66702 30233.71269 58081.0174 55442.05555 0.994876727 0.823774107 1.163097599 1.014204328 0.868018476 0.764582959 0.704405106 0.545320919 1.047598557 1 15.75869313 -5.952400904 3.392279649 0.778898534 0.997507638 0.231000766 0.154828012 0.308775312 7.34449456 0.050584665 0.056573969 1.12E-06 5.952400904 0.218609103 LTLT(ph)SDESTLIEDGGAR ddPTM_HeLa_A486_30min_R1 2 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 LTLT(0.988)S(0.012)DESTLIEDGGAR;LTLT(0.913)S(0.087)DESTLIEDGGAR ; 225.6 1.19E-33 89712000 222969 298148 170058 147074 232979 263431 294781 287125 220732 347082 TRUE FALSE FALSE 207340.0245 274521.6666 235909.0119 342395.7047 203756.6014 230931.5616 221023.6759 221752.9054 239865.2275 260170.4081 0.796939306 1.055160995 0.906748057 1.316044001 0.783165937 0.887616556 0.849534263 0.852337155 0.921954304 1 17.98909735 LTLTSDES(ph)TLIEDGGAR ddPTM_HeLa_A485_30min_R1 2 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 LTLTSDES(0.948)T(0.052)LIEDGGAR;LTLTSDES(0.932)T(0.068)LIEDGGAR ; 363.97 1.90E-119 95282000 100377 92062 110510 117833 142526 92449 119587 97585 101992 153028 TRUE FALSE FALSE 122705.5174 102827.8501 151392.2477 124269.9184 128335.611 97289.48669 94036.26051 73652.12574 122460.8589 114880.9359 1.068110356 0.895081932 1.317818719 1.081727943 1.117118432 0.846872337 0.818554095 0.641117042 1.065980686 1 16.80977988 -6.264194684 24.29388479 0.848577711 1.096344491 0.367630106 0.143225989 165.7052178 1461037.209 0.048726573 0.044924916 5.44E-07 6.264194684 0.247766781 LTLTSDES(ph)TLIEDGGAR ddPTM_HeLa_A486_30min_R1 1 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 LTLTSDES(0.798)T(0.202)LIEDGGAR 282.19 1.11E-59 57325000 48379 56872 59731 20232 70644 65676 68712 65687 51915 47338 TRUE FALSE FALSE 44987.88193 52365.2556 82860.44285 47101.11847 61783.17079 57573.56286 51519.53084 50731.50404 56415.034 35484.25668 1.267826528 1.475732071 2.335132552 1.327380728 1.74114316 1.622510044 1.451898269 1.429690482 1.589860949 1 15.11489146 -9.136504476 0.424932068 0.89987431 1.64732208 0.280901043 0.283085191 6.869296745 1.48748211 1.431502583 0.180640065 7.30E-10 9.136504476 0.747447771 LTLTSR ddPTM_HeLa_A486_30min_R1 1 LTLTSR 6 0 P04181 P04181 OAT "Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form" 0 0 105.2 0.037463 16664000 9007 11320 12306 3546.1 15303 10917 13292 13264 10662 11661 FALSE FALSE TRUE 8375.655812 10422.96197 17071.21277 8255.50001 13383.55505 9570.171536 9966.201012 10244.07675 11586.19074 8741.0097 0.958202324 1.192420822 1.953002382 0.944456109 1.531122319 1.094858817 1.140165879 1.17195577 1.325497985 1 13.09358422 -6.307911692 24.99410874 1.156847295 1.323749944 0.082193649 0.281263484 1213.375832 652584.1451 0.098342958 0.086730592 4.92E-07 6.307911692 0.166902649 LTLYDIAHTPGVAADLSHIETK ddPTM_HeLa_A485_30min_R1 2 LTLYDIAHTPGVAADLSHIETK 22 0 P40926;P40926-2 P40926 MDH2 "Malate dehydrogenase, mitochondrial" 0 0 ; ; 198.9 6.43E-29 150399000 175307 170180 121294 197723 198227 222025 266340 287015 158568 312760 FALSE FALSE TRUE 214303.4373 190081.0706 166165.6981 208524.1068 178490.8239 233649.8857 209434.2832 216624.1212 190391.1431 234794.6879 0.912726941 0.809562909 0.707706378 0.888112541 0.760199583 0.995124241 0.891989018 0.922610827 0.81088352 1 17.84104024 -6.253019197 24.99157606 0.917276418 0.813350383 0.349060271 0.073726473 760.1887453 2256284.137 0.023990878 0.023613988 5.58E-07 6.253019197 -0.103926034 LTNHGK(ac)TGNGGAQSQHQNVNQGPTCNVGSK(ac)GVGAGNHGAK ddPTM_HeLa_A486_30min_R1 1 LTNHGKTGNGGAQSQHQNVNQGPTCNVGSKGVGAGNHGAK 40 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 0 2 LTNHGK(1)TGNGGAQSQHQNVNQGPTCNVGSK(1)GVGAGNHGAK 175.58 2.05E-40 36177000 1511.4 2356 2034.9 0 3682.3 1750.7 2861.2 3302.6 2851.4 1053.5 FALSE TRUE FALSE 1405.458665 2169.30198 2822.867777 0 3220.431598 1534.716434 2145.297497 2550.670075 3098.561648 789.6967429 1.779744791 2.747006366 3.57462254 0 4.078061138 1.943425052 2.716609277 3.229936173 3.923736138 1 9.62515493 -6.993365498 24.06877924 2.94075632 2.392845923 0.010192391 1.244265608 403.5607924 1464036.255 0.499344508 0.335597047 1.02E-07 6.993365498 -0.547910397 LTPAEEENNSFQRLS(ph)P ddPTM_HeLa_A485_30min_R1 2 LTPAEEENNSFQRLSP 16 1 Q5HYI7-5;Q5HYI7 Q5HYI7-5 MTX3 Metaxin-3 1 0 LTPAEEENNS(0.002)FQRLS(0.998)P;LTPAEEENNSFQRLS(1)P ; 136.39 9.67E-05 373330000 210556 349710 319830 262964 469560 340580 422270 493110 330200 375780 TRUE FALSE FALSE 257393.4558 390605.5424 438148.4262 277329.0575 422808.9577 358412.2422 332048.5649 372173.9993 396468.1112 282104.9617 0.91240315 1.384610678 1.553139738 0.983070471 1.498764698 1.270492514 1.177039081 1.319274915 1.405392194 1 18.10587251 -9.786681951 6.824534824 0.999999999 1.285263365 0.152393825 0.19623306 4.42E-09 3.96E-10 0.181407754 0.043997843 1.63E-10 9.786681951 0.285263367 LTPAEEENNSFQRLS(ph)P ddPTM_HeLa_A486_30min_R1 2 LTPAEEENNSFQRLSP 16 1 Q5HYI7-5;Q5HYI7 Q5HYI7-5 MTX3 Metaxin-3 1 0 LTPAEEENNSFQRLS(1)P;LTPAEEENNSFQRLS(1)P ; 192.85 4.19E-17 356430000 249510 288690 248590 100672 341980 270280 317110 311310 223660 279250 TRUE FALSE FALSE 232020.6375 265813.153 344850.7055 234369.5037 299085.6796 236935.6016 237765.724 240431.5088 243047.0289 209323.9824 1.108428355 1.269864781 1.647449573 1.119649555 1.428817072 1.131908532 1.135874262 1.148609472 1.161104552 1 17.67537809 -6.290270713 20.463885 1.126060454 1.31997717 0.305532661 0.149745755 102.5085621 72756.94661 0.052270205 0.046121051 5.13E-07 6.290270713 0.193916716 LTPFMLGALVAMYEHK ddPTM_HeLa_A486_30min_R1 1 LTPFMLGALVAMYEHK 16 0 P06744-2;P06744;A0A2U3TZU2 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 117 8.63E-05 5637200 7524 8140.4 8123.3 5362.8 10675 10637 14910 11089 8147.6 10356 FALSE FALSE TRUE 6996.606454 7495.325057 11268.85931 12484.86942 9336.04196 9324.715089 11179.3603 8564.276771 8853.840528 7762.790194 0.90130047 0.965545232 1.451650634 1.608296645 1.202665759 1.201206635 1.440121402 1.103247229 1.140548734 1 12.92235958 -7.481754078 24.26755143 1.087482032 1.260181971 0.127239544 0.205690155 800.0837624 472129.0009 0.122963732 0.059056073 3.30E-08 7.481754078 0.172699939 LTPLILKPFGNS(ph)ISR ddPTM_HeLa_A486_30min_R1 1 LTPLILKPFGNSISR 15 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 LTPLILKPFGNS(0.994)IS(0.006)R 77.899 0.002772 29570000 64662 52299 61628 18021 75924 44898 58802 46664 51776 54544 TRUE FALSE FALSE 60129.52771 48154.63677 85492.01206 41953.79873 66400.90396 39358.94125 44089.11766 36039.62587 56263.98537 40885.82738 1.470669216 1.177783106 2.090993812 1.02612082 1.624056751 0.96265488 1.078347204 0.881469893 1.376124417 1 15.31931322 -6.266741182 24.96728329 1.053475383 1.470209383 0.342833722 0.289341536 507.7019097 2390865.662 0.095841227 0.086959015 5.41E-07 6.266741182 0.416734 LTPPS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 LTPPSPVR 8 0 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 LTPPS(1)PVR;LTPPS(1)PVR;LTPPS(1)PVR;LTPPS(1)PVR ;;; 143.21 0.00037438 1617700000 1219330 1245060 1438330 1351100 1658670 1240620 1513510 1294450 1357180 1813580 TRUE FALSE FALSE 1490565.752 1390658.936 1970428.121 1424907.172 1493526.991 1305576.945 1190136.224 976984.1079 1629553.577 1361487.882 1.094806477 1.021425864 1.447260858 1.046580869 1.096981479 0.958933944 0.874143824 0.717585606 1.196891723 1 20.37675271 -6.091143232 1.902306942 0.923245173 1.166362141 0.277050702 0.155959916 0.416881227 3.0004516 0.059779571 0.061656536 8.11E-07 6.091143232 0.243116969 LTPPS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 LTPPSPVR 8 0 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 LT(0.002)PPS(0.998)PVR;LTPPS(1)PVR;LTPPS(1)PVR;LT(0.002)PPS(0.998)PVR ;;; 122.44 0.00066445 1729110000 1466990 2044510 1783710 554945 2158950 1854860 2033600 1934700 1806680 1843050 TRUE FALSE FALSE 1364161.577 1882495.582 2474410.281 1291940.005 1888154.36 1626026.232 1524771.771 1494211.044 1963284.477 1381538.284 0.987422204 1.362608336 1.791054443 0.935146004 1.366704334 1.176967914 1.103676814 1.081556017 1.421085829 1 20.39784411 -5.305610488 24.99998022 1.166013242 1.378588477 0.168839591 0.228195713 823.3984471 466025.517 0.063768242 0.094584181 4.95E-06 5.305610488 0.212575236 LTPRPS(ph)PSPMIESTPMSIAGDATPLLDEMDR ddPTM_HeLa_A485_30min_R1 2 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 LT(0.122)PRPS(0.395)PS(0.395)PMIES(0.041)T(0.041)PMS(0.006)IAGDATPLLDEMDR;LT(0.05)PRPS(0.689)PS(0.229)PMIES(0.016)T(0.016)PMSIAGDATPLLDEMDR ; 68.917 0.00094759 105660000 15690.1 20040.3 21435 17148.5 25508 22058 26736 29921 25022 22944 TRUE FALSE FALSE 19180.30861 22383.83876 29364.69848 18085.27913 22968.33396 23212.92277 21023.63519 22582.82784 30043.68588 17224.48305 1.113549159 1.299536171 1.70482321 1.049975147 1.333470147 1.347670215 1.220566976 1.311088859 1.74424311 1 14.07217306 -7.568002685 24.9999959 1.423969241 1.302709399 0.00605791 0.235245006 484.1737409 268238.2732 0.150502391 0.056884599 2.70E-08 7.568002685 -0.121259842 LTPRPS(ph)PSPMIESTPMSIAGDATPLLDEMDR ddPTM_HeLa_A486_30min_R1 2 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 LT(0.008)PRPS(0.979)PS(0.012)PMIES(0.001)TPMSIAGDATPLLDEMDR;LT(0.006)PRPS(0.941)PS(0.039)PMIES(0.007)T(0.007)PMSIAGDATPLLDEMDR ; 155.2 2.82E-10 173932000 36859 38388 27905 12043.2 41207 37885 40890 37468 33082 47647 TRUE FALSE FALSE 34275.37444 35345.99507 38710.56332 28037.17823 36038.43382 33211.13389 30658.88951 28937.35432 35949.5744 35715.88107 0.959667616 0.989643655 1.083847358 0.785005924 1.009031074 0.929870212 0.858410561 0.810209729 1.006543121 1 15.12427809 -5.243086068 24.99988 0.908530549 1.008911942 0.232326474 0.080235773 1183.449814 1612029.269 0.02126916 0.036750895 5.71E-06 5.243086068 0.100381393 LTPRPSPSPMIESTPMSIAGDAT(ph)PLLDEMDR ddPTM_HeLa_A485_30min_R1 3 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 LTPRPSPSPMIESTPMSIAGDAT(1)PLLDEMDR;LTPRPSPSPMIESTPMSIAGDAT(1)PLLDEMDR;LTPRPSPSPMIESTPMS(0.002)IAGDAT(0.998)PLLDEMDR ;; 106.5 0.00014045 209634000 39683.1 49928 53638 45544.7 72524 59614 73646 72994 49446 60699 TRUE FALSE FALSE 48510.46869 55766.64528 73480.92826 48032.69164 65303.25591 62735.29686 57910.93047 55092.10705 59369.35865 45567.85638 1.064576492 1.22381542 1.612560566 1.054091534 1.433099143 1.376744527 1.270872388 1.20901248 1.302878023 1 15.47572888 -10.64323442 7.677677918 0.999473206 1.288916111 0.223238546 0.158070351 0.001387553 6.45E-05 0.148991964 0.036073223 2.27E-11 10.64323442 0.289442905 LTPRPSPSPMIESTPMSIAGDAT(ph)PLLDEMDR ddPTM_HeLa_A486_30min_R1 1 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 LTPRPSPSPMIESTPMSIAGDAT(1)PLLDEMDR 128.01 3.32E-06 57410000 13933 16934 14961 8326.3 22574 12780 18989 20860 12111 17038 TRUE FALSE FALSE 12956.36865 15592.08817 20754.29987 19384.04719 19742.55843 11203.33354 14237.75135 16110.63337 13160.79123 12771.5739 1.014469223 1.220843123 1.625038545 1.517749287 1.545820318 0.877208528 1.11480006 1.261444634 1.030475283 1 13.64064871 -6.255941187 24.98252142 1.076751887 1.396410691 0.432484347 0.186930284 503.5660862 2288091.715 0.067893088 0.066024502 5.55E-07 6.255941187 0.319658803 LTPS(ph)PDIIVLSDNEAS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 LT(0.01)PS(0.99)PDIIVLS(0.022)DNEAS(0.521)S(0.457)PR 73.783 0.0092895 23723000 10441 12023 11636 9436.6 15888 11497 15862 13253 10759 12113 TRUE FALSE FALSE 12763.56443 13428.98526 15940.64061 9952.097563 14306.13493 12098.96514 12472.95412 10002.68097 12918.23261 9093.452023 1.403599469 1.476775292 1.752980119 1.094424597 1.573234773 1.330513991 1.371641274 1.099987215 1.420608211 1 13.15061235 -8.299319883 0.203968691 0.844120634 1.59064361 0.369058793 0.175340006 5.321230736 0.671143764 1.291539169 0.656040019 5.02E-09 8.299319883 0.746522976 LTPS(ph)PDIIVLSDNEASSPR ddPTM_HeLa_A485_30min_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LT(0.003)PS(0.997)PDIIVLSDNEASSPR;LTPS(1)PDIIVLSDNEASSPR ; 178.12 4.75E-14 126166000 87919 122714 147921 85330 165189 119770 138265 143712 118893 135674 TRUE FALSE FALSE 107476.2782 137064.3348 202643.1334 89991.36183 148742.2031 126040.972 108723.5532 108466.4067 142753.7345 101852.9687 1.05521007 1.345707804 1.989565312 0.883541864 1.460361981 1.23747961 1.067455908 1.064931224 1.401566752 1 16.63612851 -6.159815139 1.174246081 1.141004844 1.38799712 0.096052948 0.289288141 1.1324962 3.242338083 0.142571568 0.14099716 6.92E-07 6.159815139 0.246992276 LTPS(ph)PDIIVLSDNEASSPR ddPTM_HeLa_A486_30min_R1 4 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPS(1)PDIIVLSDNEASSPR;LTPS(1)PDIIVLSDNEASSPR;LTPS(1)PDIIVLSDNEASSPR;LT(0.001)PS(0.999)PDIIVLSDNEASSPR ;;; 282.85 9.38E-70 204722000 82167 102860 122026 31691.1 135320 76153 83101 88583 97619 82009 TRUE FALSE FALSE 76407.51761 94708.99899 169277.7352 73778.48238 118346.9038 66758.01713 62308.25085 68414.58465 106080.6935 61473.41261 1.242936001 1.54064977 2.753673954 1.200168971 1.92517218 1.085965693 1.013580477 1.1129134 1.725635344 1 15.90767496 -6.266306641 24.88751192 1.183798646 1.749016411 0.269116357 0.448561529 544.8018544 2785696.546 0.156351245 0.142259166 5.42E-07 6.266306641 0.565217765 LTPSPDIIVLS(ph)DNEAS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 LTPSPDIIVLS(0.998)DNEAS(0.538)S(0.464)PR 66.12 0.018581 38147000 67249 78875 80773 28957 89267 69780 75427 82694 70350 73137 TRUE FALSE FALSE 62535.19237 72624.65774 112050.4688 67413.35941 78070.30048 61171.25307 56554.36681 63866.3814 76447.99464 54823.01916 1.140673997 1.324711022 2.043858045 1.229654266 1.42404234 1.115795044 1.03158067 1.164955568 1.394450649 1 15.74249416 -6.06130158 2.130628733 1.145272927 1.473445245 0.24674765 0.248695139 0.470333527 4.245857155 0.094675922 0.09951962 8.68E-07 6.06130158 0.328172318 LTPSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_A485_30min_R1 4 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(1)DNEASSPR ;;; 274.27 2.16E-69 363829000 270384 366649 360841 309784 435766 364742 444145 443445 367642 402775 TRUE FALSE FALSE 330529.988 409525.4111 494331.1017 326706.7155 392379.607 383839.3271 349249.7924 334689.4185 441424.3772 302370.605 1.093128705 1.354382352 1.634851714 1.080484379 1.297677752 1.26943334 1.155038838 1.106884773 1.459878605 1 18.20595837 LTPSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_A486_30min_R1 3 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(1)DNEASSPR ;; 301.57 2.72E-79 253287000 192481 220871 197751 73876 243849 207661 237267 242381 203372 224903 TRUE FALSE FALSE 178989.0759 203368.3776 274325.4832 171987.0615 213263.1846 182041.8972 177900.287 187196.1374 221000.4487 168585.8249 1.06170893 1.206319557 1.627215593 1.020175104 1.265012552 1.079817341 1.055250565 1.110390731 1.310907657 1 17.36312371 LTPSPDIIVLSDNEAS(ph)SPR ddPTM_HeLa_A485_30min_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLS(0.002)DNEAS(0.499)S(0.499)PR;LTPSPDIIVLSDNEAS(0.5)S(0.5)PR ; 119.23 2.07E-05 208820000 123332 169237 175385 133903 214283 147620 192368 215535 155790 181333 TRUE FALSE FALSE 150766.7779 189027.795 240267.2099 141217.7818 192948.2321 155349.1549 151267.0053 162674.7033 187055.624 136130.0203 1.107520425 1.388582728 1.764983281 1.03737428 1.417381939 1.141182192 1.111195054 1.194995071 1.374095322 1 17.05462573 -5.305779568 24.99989903 1.195559444 1.417185706 0.240364935 0.192897644 664.8700452 374865.8486 0.053979754 0.080065364 4.95E-06 5.305779568 0.221626262 LTPSPDIIVLSDNEAS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLSDNEAS(0.5)S(0.5)PR;LTPSPDIIVLSDNEAS(0.842)S(0.158)PR ; 228.08 4.82E-35 265310000 136070 163870 142000 53809 178690 128760 168210 182580 131400 152870 TRUE FALSE FALSE 126532.1957 150884.3444 196986.2029 125270.0714 156277.034 112874.9003 126122.0789 141010.5197 142789.8578 114590.357 1.104213295 1.316728112 1.719046943 1.093199067 1.3637887 0.98502966 1.100634313 1.230561833 1.24608965 1 16.80612612 -5.795667696 1.906388574 1.135884196 1.358128478 0.204443768 0.184321024 0.540057705 4.045840717 0.065196484 0.083173839 1.60E-06 5.795667696 0.222244283 LTPSPDIIVLSDNEASS(ph)PR ddPTM_HeLa_A485_30min_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLSDNEAS(0.025)S(0.975)PR;LTPSPDIIVLSDNEAS(0.382)S(0.618)PR ; 275.91 1.92E-69 666870000 353490 509550 519130 406140 593870 484310 567710 610200 465980 530830 TRUE FALSE FALSE 432122.631 569137.44 711177.7898 428326.3998 534742.2176 509667.7227 446414.1207 460547.4932 559497.9118 398503.8502 1.084362499 1.428185549 1.78461962 1.07483629 1.341874658 1.27895307 1.120225364 1.155691452 1.403996251 1 18.60423414 LTPVRPAAAS(ph)PIVSGAR ddPTM_HeLa_A485_30min_R1 4 LTPVRPAAASPIVSGAR 17 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 LTPVRPAAAS(0.995)PIVS(0.005)GAR;LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR ;;; 228.69 7.51E-35 4110760000 1104300 1590370 1569750 1406220 1799030 1495900 1756970 1838210 1445080 1922270 TRUE FALSE FALSE 1349947.725 1776349.937 2150465.848 1483038.238 1619912.256 1574223.011 1381579.006 1387386.115 1735094.301 1443083.466 0.9354606 1.230940538 1.490188128 1.027687083 1.122535387 1.090874539 0.957379832 0.96140393 1.202352007 1 20.46072331 LTPVRPAAAS(ph)PIVSGAR ddPTM_HeLa_A486_30min_R1 4 LTPVRPAAASPIVSGAR 17 1 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR;LTPVRPAAAS(1)PIVSGAR ;;; 194.84 9.27E-19 3524010000 1141951.7 1175556.1 1027813.6 405131.8 1335650.4 1026884.4 1152936.3 1283771.2 989408.9 1211241.9 TRUE FALSE FALSE 1061906.783 1082400.753 1425810.552 943167.3046 1168120.672 900197.8433 864459.4432 991484.5223 1075171.66 907939.0444 1.169579378 1.192151345 1.57038136 1.038800248 1.286562881 0.991473876 0.952111762 1.092016615 1.184189254 1 19.79223592 -5.983249496 1.736522322 1.048110256 1.275947586 0.31768049 0.143349479 0.437487254 2.678630968 0.054925478 0.061434398 1.04E-06 5.983249496 0.22783733 LTPVS(ph)LSNS(ph)PIK ddPTM_HeLa_A486_30min_R1 1 LTPVSLSNSPIK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 2 0 LTPVS(0.905)LS(0.227)NS(0.867)PIK 105.99 0.00044121 0 118970 153940 94071 67359 136090 199490 195670 174450 145290 216020 TRUE FALSE FALSE 110630.8174 141741.2338 130497.8105 156815.1561 119020.3232 174878.9521 146711.2964 134731.5432 157883.8542 161927.1859 0.683213364 0.875339326 0.80590427 0.968430071 0.735023724 1.079985124 0.90603252 0.832050174 0.975029939 1 17.30498569 -2.994116695 0.526784662 0.932430455 1.58E-19 0.37538464 0.093213023 16.56796721 1.255325409 0.048095308 12.73528187 0.001013639 2.994116695 -0.932430455 LTPVS(ph)LSNSPIKGADCQEVPQDK ddPTM_HeLa_A485_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDK 23 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LT(0.011)PVS(0.377)LS(0.339)NS(0.273)PIKGADCQEVPQDK 78.921 0.0024496 626950000 321170 193140 130930 473940 241540 213920 366170 285660 220520 614220 TRUE FALSE FALSE 392613.1585 215726.0429 179366.4555 499830.1421 217491.4295 225120.5204 287934.7882 215601.4371 264776.3413 461106.2579 0.851459185 0.467844535 0.388991588 1.083980392 0.471673125 0.488218315 0.624443462 0.467574303 0.574219796 1 18.81473972 -10.1845176 4.882881627 1.000042168 0.595527642 0.258587526 0.201882292 9.10E-05 1.52E-05 0.191931727 0.04654544 6.54E-11 10.1845176 -0.404514526 LTPVS(ph)PES(ph)SSTEEK ddPTM_HeLa_A485_30min_R1 2 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 LTPVS(1)PES(0.989)S(0.011)STEEK;LTPVS(1)PES(0.971)S(0.021)S(0.005)T(0.003)EEK ; 176.56 1.84E-12 277970000 340130 289830 255880 489990 436530 330970 426030 412010 315180 584500 TRUE FALSE FALSE 415790.7451 323723.0973 350540.6601 516756.913 393067.5405 348299.0774 335005.2102 310963.9015 378433.735 438794.9069 0.947574228 0.737754911 0.798871305 1.177672997 0.895788748 0.793762808 0.763466496 0.708677099 0.862438759 1 18.74318725 -6.226383346 6.609750207 0.803531797 0.910861807 0.087178063 0.129605327 0.463580969 65.07853894 0.045051175 0.044394237 5.94E-07 6.226383346 0.107330009 LTPVS(ph)PESS(ph)STEEK ddPTM_HeLa_A486_30min_R1 2 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 LTPVS(1)PES(0.279)S(0.72)S(0.002)TEEK;LTPVS(1)PES(0.208)S(0.741)S(0.03)T(0.021)EEK ; 183.58 4.36E-17 555150000 1462930 1610660 942110 794690 1474520 1653150 2130500 1816320 1245010 1973890 TRUE FALSE FALSE 1360386.162 1483025.436 1306920.223 1850078.481 1289571.952 1449201.161 1597426.366 1402783.586 1352928.469 1479615.096 0.919418952 1.002304883 0.88328392 1.250378214 0.871559067 0.979444698 1.079622917 0.948073313 0.91437866 1 20.49679049 -9.709755294 22.71003218 1 0.987060614 0.001040439 0.106622047 0 0 0.099132928 0.024043267 1.95E-10 9.709755294 -0.012939386 LTPVS(ph)PESSSTEEK ddPTM_HeLa_A485_30min_R1 6 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LTPVS(0.984)PES(0.013)S(0.002)STEEK;LTPVS(0.539)PES(0.43)S(0.031)STEEK;LTPVS(0.999)PES(0.001)SSTEEK;LTPVS(1)PESSSTEEK;LTPVS(0.999)PESSSTEEK;LTPVS(0.996)PES(0.002)S(0.001)ST(0.001)EEK ;;;;; 264.97 5.80E-42 8184768000 3014262 2590531 2241236 4495005 3926153 2882716 4304751 3904464 2883106 5676150 TRUE FALSE FALSE 3684774.183 2893471.066 3070362.462 4740555.741 3535251.422 3033650.552 3385005.782 2946888.082 3461718.929 4261190.267 0.864728856 0.679028836 0.720541039 1.112495675 0.82963942 0.711925627 0.794380342 0.691564539 0.812383093 1 22.02282504 -11.30751948 1.923122113 1.781815063 0.799695199 0.197530365 0.11974176 6862772.636 842649.8174 23292768.45 0.031472959 4.93E-12 11.30751948 -0.982119864 LTPVS(ph)PESSSTEEK ddPTM_HeLa_A486_30min_R1 9 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LTPVS(1)PESSSTEEK;LTPVS(0.982)PES(0.013)S(0.003)S(0.001)TEEK;LTPVS(0.981)PES(0.011)S(0.008)STEEK;LTPVS(1)PESSSTEEK;LTPVS(0.919)PES(0.075)S(0.006)STEEK;LTPVS(0.989)PES(0.01)S(0.001)STEEK;LTPVS(1)PESSSTEEK;LTPVS(0.963)PES(0.007)S(0.009)S(0.011)T(0.011)EEK;LTPVS(1)PESSSTEEK ;;;;;;;; 332.81 2.79E-81 36608860000 11291850 12159600 7256230 5765161 12056850 12961370 16035590 14978190 9247240 14631920 TRUE FALSE FALSE 10500349.63 11196029.01 10066036.58 13421586.16 10544567.45 11362327.95 12023315.77 11567983.11 10048798.21 10967991.99 0.957362991 1.020791136 0.917764764 1.223704956 0.961394524 1.035953341 1.096218504 1.054703825 0.916193066 1 23.38679609 LTPVSLS(ph)NSPIKGADCQEVPQDK ddPTM_HeLa_A486_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDK 23 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVS(0.024)LS(0.542)NS(0.434)PIKGADCQEVPQDK 106.42 0.00012406 895990000 323420 338210 101340 133650 202270 353530 389690 380020 243700 487000 TRUE FALSE FALSE 300749.9281 311409.0079 140581.562 311143.9543 176899.4105 309915.063 292185.4403 293497.7418 264824.1122 365052.0302 0.823854967 0.853053763 0.385100069 0.852327692 0.484586842 0.848961346 0.800393961 0.803988795 0.725442102 1 18.47774258 LTPVSLS(ph)NSPIKGADCQEVPQDKDGYK ddPTM_HeLa_A485_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDKDGYK 27 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVS(0.056)LS(0.505)NS(0.439)PIKGADCQEVPQDKDGYK 96.77 0.00096566 255540000 292850 185700 113040 520960 314660 319370 562320 586060 261260 818260 TRUE FALSE FALSE 357993.4722 207415.9996 154858.2 549418.7257 283331.3456 336091.7194 442175.7383 442327.8661 313692.4856 614282.841 0.582782797 0.337655532 0.252095923 0.89440676 0.461239232 0.547128614 0.719824336 0.720071987 0.510664574 1 19.22854356 -14 0.081741521 2.453835343 0.132689432 0.410876731 0.170866428 241.4980607 1.390661513 62.84485762 5.569049759 1.00E-14 14 -2.321145911 LTPVSLS(ph)NSPIKGADCQEVPQDKDGYK ddPTM_HeLa_A486_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDKDGYK 27 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVS(0.003)LS(0.557)NS(0.44)PIKGADCQEVPQDKDGYK 107.52 0.00020927 417390000 165680 151100 60431 147270 147750 225620 283280 278090 124830 375970 TRUE FALSE FALSE 154066.6876 139126.2857 83831.5016 342852.0026 129217.8173 197785.2983 212400.3478 214774.9777 135650.3649 281824.6648 0.54667567 0.493662561 0.297459776 1.216543636 0.458504288 0.701802656 0.753661316 0.762087228 0.481328932 1 18.10443835 -14 0.049743195 2.251089093 1.82E-12 0.176275288 0.23831944 1039.41491 3.816148791 178.4780457 40.13617319 1.00E-14 14 -2.251089093 LTPVSLSNS(ph)PIK ddPTM_HeLa_A485_30min_R1 1 LTPVSLSNSPIK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVS(0.007)LS(0.252)NS(0.742)PIK 127.71 0.00021603 0 89309 101980 82727 116450 113600 113630 113300 114730 103490 161190 TRUE FALSE FALSE 109175.4789 113905.6739 113331.1599 122811.3686 102289.5851 119579.4911 89092.52942 86592.28761 124259.4937 121008.2995 0.902214802 0.941304641 0.936556917 1.014900376 0.845310492 0.988192476 0.736251396 0.715589658 1.026867531 1 16.88474647 -6.734819815 24.99982844 0.845976111 0.937432333 0.079619597 0.101885041 410.6838307 385694.3987 0.037969431 0.029402448 1.84E-07 6.734819815 0.091456222 LTPVSLSNS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 LTPVSLSNSPIK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVSLS(0.009)NS(0.991)PIK;LTPVSLS(0.001)NS(0.999)PIK ; 111.12 0.00039802 800202000 298947 331762 200996 112063 282750 299837 363655 318297 279444 369381 TRUE FALSE FALSE 277992.3591 305471.9709 278827.0341 260888.3274 247284.8585 262846.1595 272664.6726 245827.7215 303666.4309 276885.5933 1.003997195 1.10324256 1.007011707 0.942224275 0.893093987 0.949295181 0.984755723 0.887831391 1.096721672 1 18.07893047 -5.014203962 5.157219817 0.958161381 1.054778043 0.25466188 0.060119941 0.199868314 16.08644394 0.015570667 0.030246303 9.68E-06 5.014203962 0.096616662 LTPVSLSNS(ph)PIKGADCQEVPQDK ddPTM_HeLa_A485_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDK 23 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVSLS(0.201)NS(0.798)PIKGADCQEVPQDK 249.96 9.87E-50 698930000 271160 175510 125660 426850 197610 190580 307480 241740 190390 494030 TRUE FALSE FALSE 331478.6065 196034.3678 172146.8631 450167.7347 177935.2545 200558.4741 241784.3861 182452.886 228599.5266 370877.4129 0.893768655 0.528569174 0.464161087 1.213791185 0.479768377 0.540767561 0.651925347 0.491949306 0.616374895 1 18.50058288 -10.04054654 5.050968311 1.000005024 0.647475259 0.179138202 0.2222171 1.24E-05 2.36E-06 0.212630091 0.051569638 9.11E-11 10.04054654 -0.352529765 LTPVSLSNS(ph)PIKGADCQEVPQDK ddPTM_HeLa_A486_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDK 23 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVSLS(0.05)NS(0.95)PIKGADCQEVPQDK 202.69 4.11E-29 557280000 289040 296850 116040 127500 190990 322750 398700 350170 215760 482850 TRUE FALSE FALSE 268779.7886 273326.5249 160973.7957 296826.4435 167034.2533 282932.3865 298941.043 270443.9352 234462.2505 361941.2172 0.742606191 0.755168276 0.444751214 0.820095721 0.461495528 0.781708115 0.825938105 0.747204027 0.647790965 1 18.46539588 -6.466556248 24.99989667 0.786975653 0.646778416 0.235349169 0.139271876 468.9307773 208144.4708 0.046920689 0.041379992 3.42E-07 6.466556248 -0.140197237 LTPVSLSNS(ph)PIKGADCQEVPQDKDGYK ddPTM_HeLa_A486_30min_R1 1 LTPVSLSNSPIKGADCQEVPQDKDGYK 27 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVSLS(0.012)NS(0.987)PIKGADCQEVPQDKDGYK 171.99 2.09E-14 3012300000 2919600 2468400 834010 1961300 2167800 3446800 5361000 4496800 2069600 5392000 TRUE FALSE FALSE 2714951.117 2272794.994 1156961.008 4566005.519 1895894.31 3021568.86 4019621.097 3472976.804 2248994.594 4041808.104 0.671716976 0.562321351 0.286248376 1.129693791 0.469070837 0.747578505 0.994510623 0.85926316 0.556432799 1 21.9465694 -5.249402431 24.99421171 0.805836355 0.512318176 0.320577674 0.209537262 975.8901188 2026391.138 0.056094527 0.096183935 5.63E-06 5.249402431 -0.293518179 LTQAEISEQPTMATVVPQVPT(ph)SPK ddPTM_HeLa_A486_30min_R1 1 LTQAEISEQPTMATVVPQVPTSPK 24 0 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 LTQAEISEQPTMATVVPQVPT(0.581)S(0.419)PK 100.95 0.0012274 91893000 133150 126680 68581 94052 125500 155420 208650 189690 119410 277100 TRUE FALSE FALSE 123816.8726 116641.4154 95137.39986 218957.8091 109758.6198 136245.8606 156443.5631 146501.7279 129760.5549 207712.3564 0.596097771 0.561552608 0.458024749 1.054139546 0.52841642 0.65593527 0.753174081 0.705310606 0.624712738 1 17.66422752 -14 0.1714402 2.286426866 0.586616894 0.312662367 0.153643166 168.8460146 1.596804452 74.23771198 0.545402785 1.00E-14 14 -1.699809972 LTQAEISEQPTMATVVPQVPTS(ph)PK ddPTM_HeLa_A485_30min_R1 1 LTQAEISEQPTMATVVPQVPTSPK 24 0 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 LTQAEISEQPTMATVVPQVPT(0.248)S(0.752)PK 95.713 0.0013374 104480000 75630 74701 63584 135360 113270 88307 133760 130430 76069 185540 TRUE FALSE FALSE 92453.63258 83436.63214 87106.36755 142754.3741 101992.4411 92930.61797 105181.0833 98441.83799 91335.35055 139288.2926 0.663757383 0.599021142 0.625367473 1.024884227 0.732239869 0.66718183 0.755132261 0.706748831 0.65572884 1 17.08771448 -11.44022813 2.24876307 3.759054458 0.717669445 0.364095447 0.11313937 3621789.005 476487.1538 50703555.65 0.029950665 3.63E-12 11.44022813 -3.041385013 LTQILSYLR ddPTM_HeLa_A485_30min_R1 2 LTQILSYLR 9 0 Q13123 Q13123 IK Protein Red 0 0 ; ; 237.65 1.26E-23 55316000 48242 63301 60256 39687 77367 56188 66315 71903 46411 62878 FALSE FALSE TRUE 58973.26647 70703.5013 82547.20186 41855.00032 69664.06983 59129.9168 52146.25851 54268.67651 55725.26199 47203.67178 1.249336423 1.497839016 1.748745357 0.886689504 1.475818876 1.252655028 1.104707675 1.14967066 1.180528122 1 15.52661146 -6.271854109 0.43999968 1.040491883 1.484970943 0.273616255 0.207274078 1.716164902 0.696485324 0.204398391 0.306930036 5.35E-07 6.271854109 0.44447906 LTQT(ph)SSTEQLNVLETETEVLNK ddPTM_HeLa_A486_30min_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LT(0.015)QT(0.414)S(0.224)S(0.123)T(0.224)EQLNVLETETEVLNK 176.67 1.35E-14 79269000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LTQTS(ph)STEQLNVLETETEVLNK ddPTM_HeLa_A486_30min_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LT(0.099)QT(0.04)S(0.41)S(0.226)T(0.226)EQLNVLETETEVLNK 281.26 2.74E-73 80723000 49110 54708 37199 20525 57000 63233 64042 56931 44225 64074 TRUE FALSE FALSE 45667.6426 50372.73884 51603.44902 47783.23728 49850.5285 55431.95537 48018.01423 43969.05409 48058.45861 48029.45335 0.950825783 1.04878851 1.074412583 0.994873644 1.0379158 1.15412422 0.999761831 0.915460223 1.000603906 1 15.55163177 -6.994538427 24.9999588 0.966341429 1.045529091 0.264055817 0.053968647 177.4348627 812191.0786 0.022773891 0.015302808 1.01E-07 6.994538427 0.079187662 LTQTSS(ph)TEQLNVLETETEVLNK ddPTM_HeLa_A485_30min_R1 3 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LTQT(0.001)S(0.01)S(0.494)T(0.494)EQLNVLETETEVLNK;LT(0.225)QT(0.097)S(0.056)S(0.311)T(0.311)EQLNVLETETEVLNK;LT(0.002)QT(0.013)S(0.078)S(0.453)T(0.453)EQLNVLETETEVLNK ;; 296.04 1.67E-87 315658000 217936 193836 176828 280108 271040 213906 256725 206376 230482 396421 TRUE FALSE FALSE 266415.1113 216503.4341 242244.0356 295409.5908 244054.3059 225105.7874 201873.6065 155761.9624 276737.6233 297600.5403 0.895210442 0.727496778 0.813990577 0.992637952 0.820073464 0.756402482 0.6783375 0.523392741 0.92989624 1 18.18301762 -6.222320481 4.115690868 0.740772712 0.85079373 0.034783893 0.139019167 0.498761272 18.85507582 0.047593361 0.046081547 5.99E-07 6.222320481 0.110021018 LTQTSS(ph)TEQLNVLETETEVLNK ddPTM_HeLa_A486_30min_R1 1 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LTQT(0.001)S(0.006)S(0.496)T(0.496)EQLNVLETETEVLNK 295.21 1.79E-87 113430000 122340 136720 86542 54890 131570 144360 141620 137360 101040 161560 TRUE FALSE FALSE 113764.5978 125885.8093 120053.3801 127786.694 115067.2638 126550.3309 106185.1781 106086.1265 109798.2286 121104.3244 0.939393356 1.039482363 0.991321992 1.055178621 0.950149917 1.044969546 0.876807485 0.875989582 0.906641683 1 16.88589086 -6.765920176 24.9995361 0.904525476 1.004437287 0.4389991 0.048474745 91.55510101 510802.6904 0.018528249 0.012974184 1.71E-07 6.765920176 0.099911811 LTQYHGGS(ph)LPNVSQLR ddPTM_HeLa_A485_30min_R1 5 LTQYHGGSLPNVSQLR 16 0 Q6UUV7;Q6UUV7-3;H0YK33 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR ;;;; 273.26 1.41E-58 6051000000 1401954 1990140 1941540 1473286 2329990 1789800 2123710 2556750 1776960 1724140 TRUE FALSE FALSE 1713813.831 2222869.561 2659796.44 1553767.884 2098008.015 1883511.16 1669962.009 1929703.054 2133579.573 1294343.628 1.324079474 1.717372043 2.054938412 1.200429198 1.620904966 1.455186335 1.290199892 1.490873838 1.64838728 1 20.30378925 -5.280035947 24.91281857 1.415629581 1.700654264 0.247035966 0.246158033 1142.229164 1530180.009 0.068053928 0.101137269 5.25E-06 5.280035947 0.285024684 LTQYHGGS(ph)LPNVSQLR ddPTM_HeLa_A486_30min_R1 6 LTQYHGGSLPNVSQLR 16 0 Q6UUV7;Q6UUV7-3;H0YK33 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR;LTQYHGGS(1)LPNVSQLR ;;;;; 249.29 3.51E-42 8138470000 4361920 5047630 4317070 997882 5428170 3878250 4582820 4626610 3904125 4220120 TRUE FALSE FALSE 4056171.933 4647637.416 5988755.119 2323119.726 4747318.303 3399790.946 3436149.964 3573231.901 4242537.698 3163374.484 1.282229453 1.46920241 1.89315402 0.734380244 1.500713345 1.074735528 1.086229272 1.129563357 1.341143048 1 21.59303292 -5.256699655 24.99118222 1.141313998 1.540295973 0.402296367 0.23631144 418.1499142 2204775.128 0.062541979 0.103991422 5.54E-06 5.256699655 0.398981975 LTRGEADRDTYRR ddPTM_HeLa_A485_30min_R1 2 LTRGEADRDTYRR 13 3 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ; ; 82.908 0.0026058 59555000 5805.5 27671 12562.1 5249.5 20236.9 37070 44174 197442 13546.8 8889.7 FALSE FALSE TRUE 7096.913446 30906.88274 17209.34354 5536.266893 18222.04318 39010.92788 34735.86403 149019.0399 16265.5185 6673.661393 1.063421266 4.631173343 2.578695941 0.829569642 2.730441673 5.845506025 5.204918558 22.32942775 2.437270569 1 12.70426277 -6.761758885 2.518873933 9.896954537 2.626914437 0.143565424 5.610091676 0.395660314 5.132889073 2.485769173 1.65762146 1.73E-07 6.761758885 -7.2700401 LTRPAAS(ph)PAVGEK ddPTM_HeLa_A485_30min_R1 4 LTRPAASPAVGEK 13 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 LTRPAAS(1)PAVGEK;LTRPAAS(1)PAVGEK;LT(0.012)RPAAS(0.988)PAVGEK;LT(0.005)RPAAS(0.995)PAVGEK ;;; 178 3.18E-12 5966490000 5599340 5766090 4578940 6902640 7515350 6360550 8503780 9059780 5341110 8883850 TRUE FALSE FALSE 6844893.866 6440384.067 6272880.452 7279713.745 6767095.366 6693578.563 6686877.934 6837854.75 6413021.785 6669269.69 1.026333344 0.965680557 0.940564821 1.09153087 1.014668124 1.003644908 1.002640206 1.025277889 0.961577816 1 22.66909736 LTRPAAS(ph)PAVGEK ddPTM_HeLa_A486_30min_R1 4 LTRPAASPAVGEK 13 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 LT(0.004)RPAAS(0.996)PAVGEK;LTRPAAS(1)PAVGEK;LTRPAAS(1)PAVGEK;LTRPAAS(1)PAVGEK ;;; 164.8 9.99E-11 7944046000 12760470 13590940 7719710 5569913 13573620 14028500 15975240 15668160 9950220 16168750 TRUE FALSE FALSE 11866026.95 12513944.42 10708988.45 12967038.95 11871090.01 12297806.3 11978065.98 12100862 10812713.08 12119989.76 0.979045955 1.032504537 0.883580652 1.069888606 0.9794637 1.014671344 0.988290108 0.998421801 0.892138797 1 23.53088514 LTS(ph)DEEGEPSGK ddPTM_HeLa_A485_30min_R1 3 LTSDEEGEPSGK 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 LT(0.011)S(0.989)DEEGEPSGK;LT(0.031)S(0.969)DEEGEPSGK;LT(0.002)S(0.998)DEEGEPSGK ;; 220.34 5.70E-23 2215680000 3114710 2232530 1815770 4835640 3202960 2568180 4010150 3362580 2488580 6045860 TRUE FALSE FALSE 3807566.494 2493604.963 2487498.883 5099798.769 2884062.056 2702645.934 3153348.693 2537901.983 2988015.179 4538738.368 0.838904159 0.54940487 0.548059545 1.123615938 0.635432541 0.595461936 0.694763266 0.559164635 0.65833607 1 22.1138599 -10.13091213 5.451199769 1.000005751 0.685745048 0.236477939 0.167413303 1.18E-05 1.88E-06 0.16370345 0.039703192 7.40E-11 10.13091213 -0.314260702 LTS(ph)DEEGEPSGK ddPTM_HeLa_A486_30min_R1 3 LTSDEEGEPSGK 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 LTS(1)DEEGEPSGK;LTS(1)DEEGEPSGK;LT(0.047)S(0.953)DEEGEPSGK ;; 322.75 4.16E-61 2892920000 3530450 3980220 1888130 1553860 3143190 4476000 5001700 4460800 2996420 4890400 TRUE FALSE FALSE 3282983.686 3664812.871 2619264.502 3617464.608 2748941.801 3923796.629 3750221.757 3445173.219 3256152.098 3665812.009 0.895567934 0.999727444 0.714511409 0.986811271 0.74988619 1.070375846 1.023026208 0.939811755 0.888248522 1 21.80570137 -6.273850766 24.98697722 0.982951552 0.874475709 0.267279484 0.094990862 1145.929506 2307013.437 0.032674032 0.029003878 5.32E-07 6.273850766 -0.108475843 LTS(ph)DEEGEPSGKR ddPTM_HeLa_A485_30min_R1 2 LTSDEEGEPSGKR 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 LT(0.002)S(0.998)DEEGEPSGKR;LT(0.111)S(0.889)DEEGEPSGKR ; 185.27 1.91E-17 694750000 330820 350620 241390 430000 494700 453680 566600 666920 326030 575270 TRUE FALSE FALSE 404409.7677 391621.959 330690.2061 453489.8112 445445.931 477433.9833 445541.2813 503356.8243 391461.2305 431865.7761 0.936424672 0.906814063 0.765724501 1.050071194 1.031445314 1.105514745 1.031666101 1.165539971 0.90644189 1 18.72022347 -5.286730999 24.32526286 1.050258518 0.873370388 0.519107252 0.075454501 381.8291031 367239.0625 0.020373412 0.030233479 5.17E-06 5.286730999 -0.17688813 LTS(ph)DEEGEPSGKR ddPTM_HeLa_A486_30min_R1 2 LTSDEEGEPSGKR 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 LT(0.035)S(0.965)DEEGEPSGKR;LT(0.09)S(0.91)DEEGEPSGKR ; 184.51 2.03E-17 1143670000 499850 529950 286890 256650 556990 569130 718600 713530 405850 758710 TRUE FALSE FALSE 464813.0962 487954.832 397981.4912 597494.1704 487127.1205 498916.5271 538798.6794 551074.7953 441029.4048 568724.0776 0.817291046 0.857981667 0.699779571 1.050587084 0.856526283 0.877255855 0.947381517 0.96896688 0.77547166 1 19.11736936 -5.252045277 24.99846602 0.919945768 0.798313863 0.356436858 0.081840244 800.927116 2131327.639 0.021471865 0.036562149 5.60E-06 5.252045277 -0.121631905 LTS(ph)PGALLFQ ddPTM_HeLa_A485_30min_R1 2 LTSPGALLFQ 10 0 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 LT(0.154)S(0.846)PGALLFQ;LT(0.014)S(0.986)PGALLFQ ; 92.439 0.0028761 43576000 58193 76366 76100 58730 96682 70889 85100 92333 72158 83281 TRUE FALSE FALSE 71137.83209 85296.3394 104252.5568 61938.27119 87056.00061 74600.63842 66917.6898 69688.18698 86639.44873 62520.57937 1.13783066 1.36429221 1.667491854 0.990686136 1.392437522 1.193217324 1.070330609 1.114643973 1.385774886 1 15.93204353 -5.27829063 24.99863985 1.17549588 1.38731369 0.253761762 0.176800104 1164.977379 1728228.049 0.049378959 0.073471976 5.27E-06 5.27829063 0.21181781 LTS(ph)PGALLFQ ddPTM_HeLa_A486_30min_R1 3 LTSPGALLFQ 10 0 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 LT(0.156)S(0.844)PGALLFQ;LT(0.11)S(0.89)PGALLFQ;LT(0.078)S(0.922)PGALLFQ ;; 116.77 0.00042484 89975000 97595 113840 93703 38686.7 129375 95924 112709 121365 91286 94285 TRUE FALSE FALSE 90754.09448 104818.9038 129987.3111 90064.59272 113147.5811 84089.87216 84508.01609 93732.83888 99198.74398 70675.42231 1.284096954 1.483102617 1.839215201 1.274341062 1.600946658 1.189803604 1.195720002 1.326243775 1.403581906 1 16.10892098 -6.267765017 24.86472322 1.24175072 1.502320354 0.366205676 0.178823877 568.2584672 2233694.52 0.061854094 0.055879823 5.40E-07 6.267765017 0.260569635 LTS(ph)SLEAGLQR ddPTM_HeLa_A486_30min_R1 1 LTSSLEAGLQR 11 0 B7Z879;A0A087WXL6;Q9H270 B7Z879 VPS11 Vacuolar protein sorting-associated protein 11 homolog 1 0 LTS(0.849)S(0.151)LEAGLQR 273.24 1.21E-34 147910000 290710 321550 301970 119700 418920 329080 361300 374620 310170 382820 TRUE FALSE FALSE 270332.7302 296069.2069 418900.871 278667.6493 366375.1473 288481.4554 270898.9186 289327.2039 337055.7853 286959.3803 0.942059221 1.031746049 1.459791524 0.971104862 1.276749159 1.005304149 0.944032282 1.008251424 1.174576642 1 18.13048701 -6.371667396 22.78427189 1.021794775 1.139487342 0.115115819 0.151886588 29.18195885 5996.583908 0.053494329 0.047177573 4.25E-07 6.371667396 0.117692567 LTS(ph)TPLQSHSSVEPWLDR ddPTM_HeLa_A486_30min_R1 1 LTSTPLQSHSSVEPWLDR 18 0 A0A494C143;Q14689-3;Q14689-2;Q14689-4;Q14689-5;Q14689-6;Q14689 A0A494C143 DIP2A Disco-interacting protein 2 homolog A 1 0 LT(0.116)S(0.481)T(0.402)PLQSHSSVEPWLDR 81.48 0.0018689 111840000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LTSFITVFK ddPTM_HeLa_A485_30min_R1 1 LTSFITVFK 9 0 Q5T2B5;A0A0A0MTN0;Q13617;Q13617-2 Q5T2B5 CUL2 Cullin-2 0 0 133.57 0.0030423 0 4340.5 4484.2 4947.6 5331.6 6420.9 5366.1 5381.1 6231.4 5177.7 6706.9 FALSE FALSE TRUE 5306.02925 5008.588183 6777.923127 5622.851808 5781.612651 5647.060698 4231.384025 4703.13938 6216.816897 5034.993261 1.053830457 0.994755687 1.346163297 1.116754585 1.148286075 1.121562712 0.840395172 0.934090501 1.23472199 1 12.29777413 -6.56146622 24.99470008 0.994547795 1.135344762 0.199763234 0.125099513 256.0468143 165850.0924 0.048683038 0.037709778 2.74E-07 6.56146622 0.140796967 LTSLLEETLNKFNFAR ddPTM_HeLa_A486_30min_R1 1 LTSLLEETLNKFNFAR 16 1 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 0 0 136.81 1.21E-06 3236900 5337 5397.9 3334 1769.9 6499.7 4295.8 6479.3 5934.9 4210.5 5903.6 FALSE FALSE TRUE 4962.90386 4970.150745 4625.014088 4120.416646 5684.447019 3765.827872 4858.110609 4583.652828 4575.46953 4425.300134 1.121484128 1.123121731 1.045130036 0.93110445 1.284533669 0.850976828 1.097803643 1.035783492 1.033934285 1 12.11155959 -6.277702277 24.92746285 1.011817647 1.089748817 0.182716911 0.10084019 1744.188593 2673450.458 0.034705183 0.030698321 5.28E-07 6.277702277 0.07793117 LTSLVPFVDAFQLER ddPTM_HeLa_A485_30min_R1 1 LTSLVPFVDAFQLER 15 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 80.763 0.027058 2348600 1598.7 1643.7 2280.6 1380.4 2610.5 1808.1 1650 2500.2 1645.9 1574.8 FALSE FALSE TRUE 1954.3253 1835.916417 3124.288844 1455.807757 2350.589454 1902.76932 1297.464021 1887.02203 1976.217033 1182.231342 1.653081956 1.552924839 2.642705139 1.231406836 1.988265215 1.609472911 1.097470499 1.596152938 1.671599257 1 10.20729666 -6.524669726 24.86727052 1.385625976 1.811496364 0.244434219 0.388388564 88.20836642 1224701.376 0.143932708 0.112310733 2.99E-07 6.524669726 0.425870388 LTSLVPFVDAFQLER ddPTM_HeLa_A486_30min_R1 2 LTSLVPFVDAFQLER 15 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 137.17 1.33E-05 5675300 10397 12827.5 11579.7 4114.1 14397.6 11009.4 11985.8 13378.9 10444.6 12095 FALSE FALSE TRUE 9668.22399 11811.00218 16063.66996 9577.832715 12591.71876 9651.172163 8986.826067 10332.81653 11349.94634 9066.333275 1.066387447 1.302731967 1.771793455 1.056417454 1.388843579 1.064506661 0.9912305 1.13969079 1.25187835 1 13.14630348 -6.266618506 24.49542112 1.0920525 1.327192479 0.248508491 0.19764079 490.8354728 2321468.638 0.069586906 0.06323201 5.41E-07 6.266618506 0.235139979 LTSS(ph)CPDLPSQTDKK ddPTM_HeLa_A485_30min_R1 1 LTSSCPDLPSQTDKK 15 1 P56962 P56962 STX17 Syntaxin-17 1 0 LTS(0.012)S(0.988)CPDLPSQTDKK 188.6 2.97E-18 162450000 179190 140520 93527 238450 172380 182630 283960 277760 120960 341950 TRUE FALSE FALSE 219050.1973 156952.5916 128126.5293 251475.9197 155217.2419 192192.2244 223289.6263 209638.9245 145235.5625 256708.1581 0.853304386 0.611404767 0.499113586 0.97961795 0.604644757 0.748679846 0.869818972 0.816643016 0.565761383 1 17.96976962 -11.72698911 2.091924986 9.999466728 0.728732019 0.236932406 0.146608746 7736309.231 277730.0216 331711122.3 0.036364606 1.88E-12 11.72698911 -9.270734708 LTSS(ph)CPDLPSQTDKK ddPTM_HeLa_A486_30min_R1 2 LTSSCPDLPSQTDKK 15 1 P56962 P56962 STX17 Syntaxin-17 1 0 LTS(0.008)S(0.992)CPDLPSQTDKK;LTS(0.015)S(0.985)CPDLPSQTDKK ; 182.7 5.07E-18 820660000 589560 650640 272140 263410 525050 693060 836660 756460 451020 864450 TRUE FALSE FALSE 548234.8885 599080.9168 377519.8962 613231.792 459193.3331 607557.3037 627318.8187 584230.5714 490114.7767 647986.0934 0.846059652 0.924527429 0.582604936 0.946365668 0.708646895 0.937608554 0.968105373 0.901609737 0.756366196 1 19.30560333 -6.288578693 24.51149743 0.910049053 0.804339521 0.190759334 0.114276561 1067.397307 964040.6082 0.039230177 0.034607878 5.15E-07 6.288578693 -0.105709532 LTSS(ph)LEAGLQR ddPTM_HeLa_A485_30min_R1 2 LTSSLEAGLQR 11 0 B7Z879;A0A087WXL6;Q9H270 B7Z879 VPS11 Vacuolar protein sorting-associated protein 11 homolog 1 0 LTS(0.024)S(0.976)LEAGLQR;LTS(0.271)S(0.729)LEAGLQR ; 236.08 1.15E-21 300210000 317840 396330 449140 356970 556670 459500 565260 575470 427750 510300 TRUE FALSE FALSE 388542.4115 442677.3459 615295.5763 376470.3672 501245.9802 483558.7095 444487.5833 434335.0802 513595.5014 383091.6014 1.014228477 1.155539156 1.60613173 0.982716316 1.308423308 1.262253486 1.160264495 1.133762992 1.340659778 1 18.54732987 -10.220695 4.162533512 0.999874177 1.22061855 0.129756675 0.16943719 15954423.42 39174563.51 10395.63315 0.039654303 6.02E-11 10.220695 0.220744373 LTSS(ph)LEAGLQR ddPTM_HeLa_A486_30min_R1 3 LTSSLEAGLQR 11 0 B7Z879;A0A087WXL6;Q9H270 B7Z879 VPS11 Vacuolar protein sorting-associated protein 11 homolog 1 0 LT(0.003)S(0.009)S(0.989)LEAGLQR;LTS(0.002)S(0.998)LEAGLQR;LTS(0.081)S(0.919)LEAGLQR ;; 241.35 7.76E-22 496180000 620160 708400 600070 214692 837250 650050 742840 828410 645140 827110 TRUE FALSE FALSE 576689.9865 652263.8041 832433.1744 499813.8259 732234.298 569853.4402 556973.575 639799.1271 701061.2546 619996.2724 0.930150732 1.052044719 1.342642225 0.806156179 1.181030162 0.919123978 0.898349877 1.03194028 1.130750757 1 19.24190002 -5.278906208 24.99288909 0.99718744 1.102655838 0.120244441 0.139685965 1849.213447 2645992.64 0.039062243 0.058083188 5.26E-06 5.278906208 0.105468398 LTST(ph)PLQSHSSVEPWLDR ddPTM_HeLa_A485_30min_R1 2 LTSTPLQSHSSVEPWLDR 18 0 A0A494C143;Q14689-3;Q14689-2;Q14689-4;Q14689-5;Q14689-6;Q14689 A0A494C143 DIP2A Disco-interacting protein 2 homolog A 1 0 LT(0.014)S(0.109)T(0.877)PLQSHSSVEPWLDR;LT(0.073)S(0.368)T(0.559)PLQSHSSVEPWLDR ; 174.71 1.56E-12 244910000 120400 251800 275750 81839 307190 158027 204152 207110 195036 154932 TRUE FALSE FALSE 147182.5646 281245.8196 377761.3999 86309.65734 276605.085 166301.0494 160533.2574 156315.9478 234177.9362 116310.3037 1.265430146 2.418064528 3.247875621 0.742063726 2.378164927 1.429804962 1.380215272 1.343956148 2.013389431 1 16.82761938 -5.268094171 24.99623147 1.516455233 2.321217542 0.27387645 0.624057956 704.9834702 2648005.954 0.171698267 0.26141833 5.39E-06 5.268094171 0.804762309 LTSVVMEK ddPTM_HeLa_A485_30min_R1 2 LTSVVMEK 8 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042;A0A3B3ISD2 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 0 0 ; ; 95.793 0.011115 266220000 118519 227700 218580 59518 951770 118287 521850 459410 200253 433470 FALSE FALSE TRUE 144883.1427 254327.5343 299441.8379 62769.31763 857008.4369 124480.3244 410352.4844 346738.9772 240441.9403 325413.9064 0.445227262 0.781550909 0.920187589 0.192890704 2.633595 0.38252921 1.26101705 1.065532143 0.738880348 1 18.31191638 LTSVVMEK ddPTM_HeLa_A486_30min_R1 2 LTSVVMEK 8 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042;A0A3B3ISD2 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 0 0 ; ; 95.793 0.011115 166332000 303500 133721 154783 25551 323570 157256 295950 414620 149042 182161 FALSE FALSE TRUE 282226.2173 123124.461 214719.1228 59484.01928 282984.8334 137855.3536 221900.1798 320220.0771 161961.0806 136546.6999 2.066884205 0.901702209 1.572495878 0.435631321 2.072439931 1.009583927 1.625086361 2.345132305 1.186122262 1 17.05903492 -6.958475865 23.64289213 1.656398545 1.324714105 0.010598365 0.580206299 234.9747372 133787.9835 0.229103195 0.154461061 1.10E-07 6.958475865 -0.33168444 LTSVVTPRPFGS(ph)QTR ddPTM_HeLa_A485_30min_R1 2 LTSVVTPRPFGSQTR 15 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LTSVVTPRPFGS(0.995)QT(0.005)R;LTSVVTPRPFGS(0.992)QT(0.008)R ; 124.25 1.40E-05 729230000 199188 264920 238290 185977 355650 240620 302880 314750 262980 284830 TRUE FALSE FALSE 243496.6834 295900.0895 326443.3871 196136.4526 320240.2372 253218.4911 238167.2137 237557.069 315757.6738 213827.1229 1.138754897 1.383828606 1.526669688 0.917266481 1.497659571 1.184220634 1.113830699 1.11097725 1.476696078 1 17.70608534 -6.467919996 24.99180127 1.179537503 1.295109148 0.077253129 0.199821085 873.4136682 397173.4002 0.068490388 0.060402418 3.40E-07 6.467919996 0.115571645 LTSVVTPRPFGS(ph)QTR ddPTM_HeLa_A486_30min_R1 2 LTSVVTPRPFGSQTR 15 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 LTSVVTPRPFGS(0.973)QT(0.027)R;LTSVVTPRPFGS(0.991)QT(0.009)R ; 133.21 6.73E-06 699440000 182179 208791 170824 97767 246620 193431 194980 234670 164543 217910 TRUE FALSE FALSE 169409.1929 192245.6408 236971.6276 227606.5169 215686.62 169567.4499 146193.9417 181240.7638 178805.7197 163343.9176 1.037131932 1.176937859 1.450752688 1.393418991 1.320444759 1.03810079 0.895006951 1.109565427 1.09465796 1 17.31755321 -6.26853063 21.85968027 1.026035254 1.286509359 0.516965674 0.119762418 88.1331208 271678.9162 0.045677701 0.041285435 5.39E-07 6.26853063 0.260474105 LTTGTPAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 LTTGTPASPR 10 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 LTTGTPAS(1)PR 117.21 0.00034547 0 240370 263600 237840 80207 303050 213140 257580 283790 204030 223740 TRUE FALSE FALSE 223521.3043 242711.376 329938.0176 186725.9494 265038.6432 186844.9538 193130.7596 219177.2121 221715.4847 167714.0477 1.332752428 1.447173802 1.967265248 1.11335903 1.580300797 1.114068597 1.151547901 1.306850649 1.321985175 1 17.35564401 -5.944264582 1.444557273 1.201913749 1.530927002 0.287507145 0.226064897 0.543955677 2.345119516 0.090132113 0.105864072 1.14E-06 5.944264582 0.329013253 LTTPTYGDLNHLVSATMSGVTTCLR ddPTM_HeLa_A485_30min_R1 8 LTTPTYGDLNHLVSATMSGVTTCLR 25 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ;;;;;;; ;;;;;;; 339.62 5.50E-117 1583335000 661726 756362 934264 632255.6 1044776 890838 1128852 1164825 759073 966545 FALSE FALSE TRUE 808924.6658 844811.9564 1279887.132 666794.1225 940754.433 937480.9002 887663.5483 879149.8424 911411.9885 725603.1194 1.114830744 1.164289312 1.763894197 0.918951565 1.296513766 1.292002301 1.223345827 1.211612545 1.256075069 1 19.46882113 -12.24728421 0.31035903 0.348169578 1.267618007 0.120684347 0.201394435 190.9476271 4.740662293 80.58556569 0.190348974 5.66E-13 12.24728421 0.919448428 LTTPTYGDLNHLVSATMSGVTTCLR ddPTM_HeLa_A486_30min_R1 4 LTTPTYGDLNHLVSATMSGVTTCLR 25 0 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ;;; ;;; 316.45 5.47E-100 1336420000 716046 1054520 1164560 142438 1344260 1049780 1178370 1112520 1174740 967040 FALSE FALSE TRUE 665854.8731 970955.9947 1615508.82 331602.8624 1175650.376 920268.817 883529.3625 859223.4821 1276567.409 724886.8896 0.918563824 1.339458623 2.228635727 0.457454628 1.621839756 1.269534365 1.218851348 1.185320764 1.761057383 1 19.46739637 -5.25595004 24.99993084 1.243238382 1.479943192 0.07360093 0.445887949 1537.485955 7002103.313 0.119361452 0.199320765 5.55E-06 5.25595004 0.23670481 LTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK ddPTM_HeLa_A485_30min_R1 1 LTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRK 36 2 Q5JP53;P07437;Q5ST81;P68371;M0R2D3;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 90.741 7.55E-07 5844400 1773.3 4063 1670.5 858.98 2537.9 5550.4 6129.5 17506 1195.1 1959.4 FALSE FALSE TRUE 2167.764467 4538.132507 2288.487465 905.9039023 2285.217765 5841.010361 4819.882252 13212.62605 1434.945608 1470.95764 1.473709649 3.085155128 1.555780672 0.615859952 1.553557834 3.970889577 3.27669684 8.982329397 0.975517968 1 10.52253999 -6.279684844 6.262907122 4.127771474 1.669355753 0.155065285 2.172754723 0.258691183 42.81975734 0.735064012 0.669700605 5.25E-07 6.279684844 -2.458415721 LTTTGQVT(ph)SPVK ddPTM_HeLa_A485_30min_R1 1 LTTTGQVTSPVK 12 0 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.719)S(0.281)PVK 190.03 1.67E-12 619280000 1632100 1145300 983780 2238700 1502500 1210300 1773400 1307800 1268400 2498100 TRUE FALSE FALSE 1995155.014 1279232.872 1347721.161 2360994.512 1352905.824 1273669.437 1394498.603 987059.9994 1522956.246 1875369.644 1.063872939 0.682123056 0.718642943 1.25894888 0.721407552 0.679156475 0.743585995 0.526328237 0.812083234 1 20.83874355 -5.9239159 24.99999726 0.719604245 0.909493207 0.171554186 0.189951199 62.97400423 20689.77437 0.0583382 0.066149612 1.19E-06 5.9239159 0.189888962 LTTTGQVT(ph)SPVKGASFVTSTNPR ddPTM_HeLa_A485_30min_R1 1 LTTTGQVTSPVKGASFVTSTNPR 23 1 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.5)S(0.5)PVKGASFVTSTNPR 183.49 1.01E-20 2597400000 850590 1010900 785050 871680 1314400 1267000 1752400 1829300 934220 1182900 TRUE FALSE FALSE 1039800.811 1129115.961 1075472.664 919297.6712 1183533.721 1333338.161 1377985.424 1380661.307 1121709.385 888024.7997 1.170914158 1.271491474 1.211084042 1.035216214 1.332771023 1.501465006 1.551742051 1.554755348 1.263150967 1 19.76024044 -5.977129592 10.4378571 1.419700135 1.182126505 0.230806328 0.165393666 0.487221638 215.4258808 0.049885867 0.056274009 1.05E-06 5.977129592 -0.23757363 LTTTGQVTS(ph)PVK ddPTM_HeLa_A485_30min_R1 3 LTTTGQVTSPVK 12 0 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.028)S(0.972)PVK;LTTTGQVT(0.022)S(0.978)PVK;LTTTGQVT(0.038)S(0.962)PVK ;; 227.63 2.65E-23 2438360000 3802500 2920760 2585920 5684800 3829800 3097750 4491500 3463050 3079030 6930300 TRUE FALSE FALSE 4648353.007 3262317.475 3542559.417 5995346.229 3448491.665 3259943.4 3531854.333 2613731.558 3696963.078 5202703.753 0.893449488 0.627042713 0.680907387 1.15235203 0.662826836 0.626586397 0.678849787 0.502379471 0.710584968 1 22.31083013 LTTTGQVTS(ph)PVK ddPTM_HeLa_A486_30min_R1 4 LTTTGQVTSPVK 12 0 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.161)S(0.839)PVK;LTTTGQVT(0.021)S(0.979)PVK;LTTTGQVT(0.005)S(0.995)PVK;LTTTGQVT(0.497)S(0.503)PVK ;;; 211.87 1.16E-17 3167770000 6984200 7821800 4043840 2956510 6106200 8582200 9341500 8086500 6571800 9905200 TRUE FALSE FALSE 6494643.646 7201972.081 5609723.146 6882904.694 5340303.458 7523415.421 7004157.896 6245380.477 7141448.915 7424873.448 0.87471439 0.969979102 0.755531146 0.927006331 0.719245048 1.013271872 0.943337007 0.84114302 0.961827695 1 22.82393501 -6.29459317 24.99935576 0.941451158 0.855107932 0.27898356 0.081357315 1032.485343 778534.2305 0.028095511 0.024779246 5.07E-07 6.29459317 -0.086343226 LTTTGQVTS(ph)PVKGASFVTSTNPR ddPTM_HeLa_A485_30min_R1 1 LTTTGQVTSPVKGASFVTSTNPR 23 1 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.206)S(0.794)PVKGASFVTSTNPR 178.7 5.63E-21 2261100000 1218000 1571500 1213700 1299400 1919400 1799700 2316300 2783300 1349700 1672800 TRUE FALSE FALSE 1488939.898 1755273.255 1662698.136 1370382.932 1728297.797 1893929.509 1821403.583 2100691.311 1620572.41 1255801.746 1.185648852 1.397731179 1.324013239 1.091241461 1.376250513 1.508143714 1.450391026 1.672788972 1.290468353 1 20.26017729 -5.987248397 24.66804888 1.431830599 1.261571254 0.086107526 0.181081486 352.7036707 682302.3321 0.053766689 0.060929569 1.03E-06 5.987248397 -0.170259346 LTTTGQVTS(ph)PVKGASFVTSTNPR ddPTM_HeLa_A486_30min_R1 2 LTTTGQVTSPVKGASFVTSTNPR 23 1 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTT(0.001)GQVT(0.148)S(0.851)PVKGASFVTSTNPR;LTTTGQVT(0.007)S(0.993)PVKGASFVTSTNPR ; 225.8 1.55E-38 4621500000 2762200 2549680 1867180 1092240 3014810 2518510 3318300 3216400 2029000 3435300 TRUE FALSE FALSE 2568584.044 2347634.071 2590202.101 2542789.919 2636664.418 2207801.843 2488026.243 2484095.934 2204875.354 2575078.52 0.99747795 0.911674752 1.005873056 0.98746112 1.023916124 0.85737263 0.966194321 0.964668034 0.856236164 1 21.29618499 -6.239197606 24.98965325 0.929017221 0.982456547 0.23566756 0.05064552 1279.638874 1437734.55 0.016289532 0.01627886 5.77E-07 6.239197606 0.053439326 LTVAS(ph)PK ddPTM_HeLa_A485_30min_R1 8 LTVASPK 7 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK ;;;;;;; 126.31 0.0017413 7905470000 9201730 8075610 6287720 15411100 10754710 8549390 14179660 11956330 7359380 19468900 TRUE FALSE FALSE 11248623.09 9019982.341 8613809.282 16252969.37 9683933.31 8997022.841 11150059.8 9024021.321 8836340.062 14615661.53 0.769628051 0.617144994 0.589354732 1.112024204 0.662572357 0.61557411 0.762884375 0.61742134 0.604580234 1 23.80101179 -9.922379386 4.140103218 1.000009759 0.706780274 0.260003306 0.148945013 48898520.39 104491913 7342.115976 0.03819286 1.20E-10 9.922379386 -0.293229485 LTVAS(ph)PK ddPTM_HeLa_A486_30min_R1 8 LTVASPK 7 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK;LTVAS(1)PK ;;;;;;; 122.94 0.0017948 9315540000 13362950 13570980 6885700 8848340 11519480 14986340 19497000 17558530 10015670 23485100 TRUE FALSE FALSE 12426276.21 12495566.12 9552027.445 20599382.69 10074599.4 13137477.74 14618644.38 13560836.02 10883836.34 17604278.1 0.705866843 0.709802813 0.542596941 1.170135042 0.572281314 0.746266201 0.830402945 0.770314803 0.618249512 1 24.06942273 -11.24955093 2.298319937 1.954146838 0.745280862 0.178166638 0.166833228 13406868.1 2187534.052 66535302.4 0.040210457 5.63E-12 11.24955093 -1.208865976 LTVAS(ph)PKR ddPTM_HeLa_A485_30min_R1 1 LTVASPKR 8 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 LTVAS(1)PKR 65.278 0.013628 227490000 259470 245240 207680 380260 426390 326050 524880 449520 272320 549350 TRUE FALSE FALSE 317188.2063 273918.6847 284509.4743 401032.6409 383937.1145 343121.4738 412735.1001 339274.5152 326972.1261 412407.155 0.769114218 0.664194792 0.689875214 0.972419212 0.930966182 0.831996898 1.000795197 0.822668838 0.792838151 1 18.65370984 -5.25110631 24.94400941 0.901728356 0.703374727 0.605607455 0.07371062 470.1617526 1134966.967 0.020093313 0.034329032 5.61E-06 5.25110631 -0.198353629 LTVAS(ph)PKR ddPTM_HeLa_A486_30min_R1 1 LTVASPKR 8 1 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 LT(0.001)VAS(0.999)PKR 62.633 0.016865 216790000 451600 461050 246380 317150 539660 527000 790660 758160 341500 782620 TRUE FALSE FALSE 419945.1721 424514.7189 341784.9343 738341.2279 471970.8107 461984.0981 592828.5053 585543.5185 371101.495 586646.858 0.715839804 0.723629068 0.582607628 1.25857868 0.804522865 0.787499484 1.010537255 0.998119244 0.632580725 1 19.16213278 -5.166517503 24.86013746 0.919978738 0.678985209 0.339427955 0.161704013 60.43880637 15824.41881 0.042965372 0.074418213 6.82E-06 5.166517503 -0.240993528 LTVENS(ph)PK ddPTM_HeLa_A485_30min_R1 8 LTVENSPK 8 0 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK ;;;;;;; 139.32 0.0004363 10964480000 18459600 16144830 10529100 28580300 16371390 15934740 25133530 21599190 12256300 36868090 TRUE FALSE FALSE 22565874.34 18032827.43 14424252.24 30141569.42 14741396.93 16769058.35 19763545.99 16301954.79 14716026.99 27677553.67 0.815313181 0.651532561 0.521153438 1.089025778 0.53261199 0.605872128 0.714064047 0.588995508 0.531695365 1 24.7222131 -10.13037118 4.872303964 1.000018862 0.672177866 0.263823729 0.164246364 3.33E-05 5.94E-06 0.156180148 0.037877058 7.41E-11 10.13037118 -0.327840996 LTVENS(ph)PK ddPTM_HeLa_A486_30min_R1 6 LTVENSPK 8 0 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK;LTVENS(1)PK ;;;;; 147.62 0.000287 14475800000 25838900 23899300 9602110 14971230 15445360 23825900 31463800 26369600 16968740 45411500 TRUE FALSE FALSE 24027726.54 22005432.43 13320304.15 34853780.04 13508058.93 20886502.7 23591224.45 20365817.72 18439604.05 34040164.82 0.705863989 0.646454932 0.391311388 1.023901624 0.396827072 0.613584065 0.693040841 0.598287871 0.541701374 1 25.02073469 -10.05197524 4.56275543 1.000016498 0.62342139 0.309147494 0.168874296 46359307.58 34043947.07 7344.010325 0.038484617 8.87E-11 10.05197524 -0.376595108 LTVENS(ph)PKQEAGISEGQGTAGEEEEK ddPTM_HeLa_A485_30min_R1 2 LTVENSPKQEAGISEGQGTAGEEEEK 26 1 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LTVENS(1)PKQEAGISEGQGTAGEEEEK;LTVENS(1)PKQEAGISEGQGTAGEEEEK ; 358.26 3.56E-143 533500000 147414 106766 87137 464410 271863 195688 437640 426030 177513 807780 TRUE FALSE FALSE 180205.7357 119251.355 119372.6024 489779.5424 244795.3652 205933.9211 344134.6388 321545.4745 213138.2309 606415.3121 0.297165543 0.196649644 0.196849585 0.807663548 0.403676095 0.339592218 0.567490022 0.530239702 0.351472376 1 19.20994666 -14 0.138667269 2.937550338 0.207632121 0.532865275 0.170553244 117.0582959 0.997226837 63.15528868 1.132932972 1.00E-14 14 -2.729918216 LTVENS(ph)PKQEAGISEGQGTAGEEEEK ddPTM_HeLa_A486_30min_R1 4 LTVENSPKQEAGISEGQGTAGEEEEK 26 1 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LTVENS(1)PKQEAGISEGQGTAGEEEEK;LTVENS(0.999)PKQEAGISEGQGTAGEEEEK;LTVENS(1)PKQEAGISEGQGTAGEEEEK;LTVENS(1)PKQEAGISEGQGTAGEEEEK ;;; 353.2 7.01E-143 860860000 385249 362521 182899 664954 498479 718371 1187990 1124480 320441 1004710 TRUE FALSE FALSE 358245.0345 333793.5157 253722.391 1548046.517 435955.1157 629745.6899 890742.3367 868460.4512 348217.0839 753124.0764 0.475678637 0.443211851 0.336893214 2.055499971 0.578862274 0.836177875 1.182729864 1.153143922 0.4623635 1 19.52252804 LTVS(ph)DGES(ph)GEEKK ddPTM_HeLa_A485_30min_R1 2 LTVSDGESGEEKK 13 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 2 0 LT(0.004)VS(0.996)DGES(1)GEEKK;LT(0.181)VS(0.819)DGES(1)GEEKK ; 84.035 0.0013425 861330000 669070 346610 279550 2043800 697560 396490 845060 546370 450980 2564500 TRUE FALSE FALSE 817902.3132 387143.0244 382967.178 2155447.619 628108.4771 417249.6033 664506.0275 412371.9008 541487.5494 1925217.346 0.424836352 0.201090555 0.198921529 1.119586639 0.326253282 0.21672857 0.345158965 0.214194985 0.281260477 1 20.8765899 -10.4722735 3.221716744 1.012530525 0.370765546 0.344258769 0.260934202 231356626.4 296361460 26055908.88 0.07000023 3.37E-11 10.4722735 -0.641764978 LTVS(ph)DGES(ph)GEEKK ddPTM_HeLa_A486_30min_R1 2 LTVSDGESGEEKK 13 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 2 0 LT(0.019)VS(0.981)DGES(1)GEEKK;LT(0.273)VS(0.727)DGES(1)GEEKK ; 109.87 0.00014513 536040000 1207150 1771700 628500 1803140 1372660 2765840 3591600 3042550 1496090 3988900 TRUE FALSE FALSE 1122535.019 1631304.04 871872.0318 4197801.046 1200488.183 2424618.782 2692943.692 2349827.783 1625772.286 2990053.477 0.375423058 0.545576878 0.291590782 1.403921729 0.401493884 0.810894789 0.900633956 0.785881524 0.543726826 1 21.51173986 LTVVS(ph)PNR ddPTM_HeLa_A485_30min_R1 4 LTVVSPNR 8 0 Q14CZ0;A0A087X1J2 Q14CZ0 C16orf72 UPF0472 protein C16orf72 1 0 LT(0.009)VVS(0.991)PNR;LT(0.005)VVS(0.995)PNR;LTVVS(1)PNR;LTVVS(1)PNR ;;; 95.822 0.0029583 763080000 757400 919830 940320 814920 1125210 842820 901970 846300 898930 936790 TRUE FALSE FALSE 925881.017 1027396.117 1288183.498 859437.0161 1013180.142 886948.752 709256.7411 638743.5981 1079337.006 703265.4933 1.316545495 1.460893683 1.831717197 1.222066238 1.440679446 1.261186224 1.008519183 0.908253859 1.534750412 1 19.42370991 -6.2595094 1.624967073 1.107048243 1.488093174 0.354032971 0.215625674 0.416569345 2.183481844 0.093394408 0.08505067 5.50E-07 6.2595094 0.381044931 LTVVS(ph)PNR ddPTM_HeLa_A486_30min_R1 4 LTVVSPNR 8 0 Q14CZ0;A0A087X1J2 Q14CZ0 C16orf72 UPF0472 protein C16orf72 1 0 LT(0.004)VVS(0.996)PNR;LTVVS(1)PNR;LT(0.001)VVS(0.999)PNR;LTVVS(1)PNR ;;; 128.35 0.00057455 650250000 868630 1031240 922380 300848 1099360 852700 910940 977700 850840 876220 TRUE FALSE FALSE 807743.5226 949520.7867 1279550.238 700389.348 961468.0177 747502.5436 683013.1771 755099.053 924591.4963 656808.8088 1.229800076 1.445657814 1.948131969 1.066351941 1.463847629 1.138082397 1.039896493 1.149648182 1.407702643 1 19.32511395 -5.305928604 24.99995514 1.191169248 1.531643934 0.365004247 0.217429724 490.6212733 275695.0998 0.06150586 0.09122841 4.94E-06 5.305928604 0.340474686 LTWHS(ph)CPEDEAQ ddPTM_HeLa_A485_30min_R1 7 LTWHSCPEDEAQ 12 0 Q13185 Q13185 CBX3 Chromobox protein homolog 3 1 0 LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ ;;;;;; 201.08 1.91E-13 6480549000 3386395 4119980 4937600 3660790 5064230 4061770 4887410 4506790 3639610 4943500 TRUE FALSE FALSE 4139686.885 4601775.822 6764223.711 3860769.688 4560017.48 4274437.997 3843174.927 3401492.686 4370046.343 3711176.428 1.115464857 1.239977649 1.822662932 1.040308852 1.228725599 1.151774398 1.035567832 0.916553754 1.177536672 1 21.82344516 -5.978851122 1.310141768 1.036818948 1.353139846 0.279694789 0.201846717 0.567480767 2.024647172 0.088128668 0.101717215 1.05E-06 5.978851122 0.316320898 LTWHS(ph)CPEDEAQ ddPTM_HeLa_A486_30min_R1 6 LTWHSCPEDEAQ 12 0 Q13185 Q13185 CBX3 Chromobox protein homolog 3 1 0 LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ ;;;;; 217.68 6.81E-23 7084450000 4476140 6209190 5571910 1670740 6992440 5612840 5864680 6208640 5241390 5743000 TRUE FALSE FALSE 4162385.701 5717151.171 7729502.773 3889567.155 6115382.973 4920384.868 4397275.034 4795068.206 5695717.905 4304915.419 0.966891401 1.328051916 1.795506304 0.903517671 1.420558217 1.142968999 1.021454455 1.113858866 1.323073127 1 22.03755346 -6.424982489 8.269885959 1.118223622 1.292477618 0.100429264 0.243586494 0.771438498 58.92099846 0.08608374 0.075768988 3.76E-07 6.424982489 0.174253996 LTWHSYPS(ph)EDDDKKDDKN ddPTM_HeLa_A485_30min_R1 2 LTWHSYPSEDDDKKDDKN 18 3 P83916 P83916 CBX1 Chromobox protein homolog 1 1 0 LTWHS(0.004)YPS(0.996)EDDDKKDDKN;LTWHSYPS(1)EDDDKKDDKN ; 208.47 1.58E-25 659420000 449690 244990 119905 1360230 312210 381460 953290 681550 227610 1805510 TRUE FALSE FALSE 549721.9891 273639.4494 164262.8492 1434535.921 281125.2762 401432.6558 749611.8038 514398.7939 273289.2392 1355429.585 0.405570304 0.201883928 0.121188774 1.058362556 0.207406773 0.296166367 0.553043708 0.379509788 0.201625553 1 20.37031874 -10.72683281 2.871923805 1.100983965 0.385053974 0.343987434 0.256573243 168115523.3 145642771.1 121530934.5 0.063144921 1.88E-11 10.72683281 -0.715929991 LTWHSYPS(ph)EDDDKKDDKN ddPTM_HeLa_A486_30min_R1 3 LTWHSYPSEDDDKKDDKN 18 3 P83916 P83916 CBX1 Chromobox protein homolog 1 1 0 LTWHSYPS(1)EDDDKKDDKN;LTWHS(0.001)YPS(0.999)EDDDKKDDKN;LTWHSYPS(1)EDDDKKDDKN ;; 257.22 9.54E-58 1297110000 815170 615650 184015 1101790 462235 1047120 1747650 1401610 452015 3137450 TRUE FALSE FALSE 758030.7925 566863.6518 255270.5361 2565022.801 404257.1761 917936.9807 1310369.485 1082494 491196.0241 2351812.099 0.322317754 0.241032714 0.108542063 1.090658052 0.171891784 0.39031051 0.557174396 0.460280819 0.208858533 1 21.16534137 -11.26774538 2.250951245 3.395139102 0.402149711 0.31674438 0.266554555 26762925.63 3964522.65 326387338 0.065375488 5.40E-12 11.26774538 -2.992989391 LTWS(ph)PGSVTNTSLAHELWK ddPTM_HeLa_A485_30min_R1 2 LTWSPGSVTNTSLAHELWK 19 0 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7;H7C269;H3BRT3 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 LTWS(0.991)PGS(0.008)VTNTSLAHELWK;LT(0.041)WS(0.933)PGS(0.025)VTNTSLAHELWK ; 207.64 6.50E-26 251820000 295340 388850 359510 209250 556370 391630 484260 571020 397590 362660 TRUE FALSE FALSE 361037.3641 434322.625 492507.7095 220680.7977 500975.8493 412135.1412 380793.895 430976.4497 477382.6661 272255.5363 1.32609742 1.59527564 1.808990613 0.810564959 1.840094259 1.513780571 1.39866355 1.582985072 1.753436028 1 18.05460186 -10.09135485 5.264913913 0.999991564 1.512941735 0.228194104 0.283813372 2.70E-05 4.66E-06 0.263931744 0.064011799 8.10E-11 10.09135485 0.512950171 LTYHGVS(ph)PCK ddPTM_HeLa_A485_30min_R1 2 LTYHGVSPCK 10 0 Q9UBS8-2;Q9UBS8 Q9UBS8-2 RNF14 E3 ubiquitin-protein ligase RNF14 1 0 LTYHGVS(1)PCK;LTYHGVS(1)PCK ; 105.66 0.0006992 549280000 790820 671350 628970 1272910 1013460 691570 1011770 886470 770500 1711580 TRUE FALSE FALSE 966735.1807 749858.5425 861652.1766 1342445.85 912556.3639 727779.5358 795597.0741 669061.8426 925132.2826 1284914.605 0.752373097 0.583586286 0.670591005 1.044774372 0.710207791 0.566403038 0.61918284 0.520705298 0.719995149 1 20.29324105 -8.038946704 22.40882517 1.000000006 0.682466168 0.318560562 0.138015967 2445.190021 1406892.237 0.143678023 0.037097506 9.14E-09 8.038946704 -0.317533838 LTYHGVS(ph)PCK ddPTM_HeLa_A486_30min_R1 2 LTYHGVSPCK 10 0 Q9UBS8-2;Q9UBS8 Q9UBS8-2 RNF14 E3 ubiquitin-protein ligase RNF14 1 0 LTYHGVS(1)PCK;LTYHGVS(1)PCK ; 128.54 6.76E-05 930200000 995080 1359760 709470 432910 1151840 1446410 1628170 1499600 1086800 1516700 TRUE FALSE FALSE 925330.0306 1252007.665 984195.7843 1007836.358 1007365.487 1267966.64 1220784.645 1158173.816 1181004.699 1136908.448 0.813900215 1.101238774 0.865677255 0.886470991 0.886056822 1.115275942 1.073775683 1.018704556 1.038786106 1 20.11668465 -6.253038681 24.99168848 1.052006695 0.917412174 0.453497097 0.075887659 607.65744 1807752.573 0.024967345 0.024585536 5.58E-07 6.253038681 -0.134594521 LTYIDKWFLYK ddPTM_HeLa_A485_30min_R1 1 LTYIDKWFLYK 11 1 P31327;P31327-3;P31327-2;A0A669KBF2 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 130.01 0.00069113 29847000 25375 28668 20620 26936 27991 30379 32405 36023 22105 49344 FALSE FALSE TRUE 31019.58121 32020.47322 28248.19607 28407.44547 25204.11776 31969.59747 25481.40703 27188.30277 26541.27074 37043.44891 0.837383724 0.864403131 0.762569277 0.766868267 0.680393389 0.863029723 0.687878904 0.733957112 0.716490271 1 15.17693081 -4.766736311 24.47807489 0.763060281 0.850893438 0.08333325 0.090562632 171.5421675 792747.0342 0.021842032 0.047765631 1.71E-05 4.766736311 0.087833157 LTYIDKWFLYK ddPTM_HeLa_A486_30min_R1 2 LTYIDKWFLYK 11 1 P31327;P31327-3;P31327-2;A0A669KBF2 P31327 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 176.29 3.59E-09 63688000 147107 170165 112457 52115 191188 165524 176295 170206 191294 206462 FALSE FALSE TRUE 136795.559 156680.5057 156003.3621 121326.3537 167207.4183 145103.3318 132184.1263 131453.8094 207875.5179 154762.5714 0.883905958 1.012392753 1.008017383 0.783951524 1.080412511 0.937586721 0.854109138 0.849390187 1.343189869 1 17.23969708 -7.747693307 24.99155757 1.171595029 0.930192276 0.424985182 0.11409235 183.5587825 333729.6429 0.074389414 0.027792091 1.79E-08 7.747693307 -0.241402754 LVARPEPATGYTLEFR ddPTM_HeLa_A485_30min_R1 4 LVARPEPATGYTLEFR 16 1 Q16658 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 223.97 6.18E-25 947736000 230171 294911 324488 227961 322316 336885 354359 427144 227931 315866 FALSE FALSE TRUE 281371.7449 329398.2761 444529.6143 240413.9322 290225.0873 354523.7777 278647.3048 322386.2643 273674.661 237126.4193 1.186589608 1.389125164 1.874652414 1.013863967 1.223925568 1.495083419 1.175100209 1.35955439 1.154129775 1 17.85529688 -8.505550448 0.305567195 0.92858041 1.414494638 0.197109482 0.220494757 5.645381667 1.111194605 0.851031744 0.296549328 3.12E-09 8.505550448 0.485914227 LVARPEPATGYTLEFR ddPTM_HeLa_A486_30min_R1 2 LVARPEPATGYTLEFR 16 1 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 208.85 9.06E-19 74273000 33453 43296 44214 15167.9 60597 39844 46110 46147 40828 42826 FALSE FALSE TRUE 31108.11745 39865.06728 61334.84489 35311.63774 52996.35922 34928.45238 34572.7903 35640.33548 44367.00391 32102.09085 0.969037113 1.241821521 1.910618382 1.099979372 1.650869392 1.088042911 1.076963817 1.11021851 1.382059633 1 14.97037964 -6.312816048 24.99978611 1.134939704 1.3816337 0.17246157 0.265871015 651.6282774 317079.1224 0.093305611 0.082287917 4.87E-07 6.312816048 0.246693997 LVDQNIFSFYLSR ddPTM_HeLa_A485_30min_R1 1 LVDQNIFSFYLSR 13 0 F8WD96;C9JH19;A0A1B0GW44;A0A1B0GVP3;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;A0A1B0GU92;A0A1B0GU03;P07339;H7C469 F8WD96 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 0 96.015 0.01441 7431700 8824.2 8113.3 9356.2 8984.3 9819.3 9668.3 11617 11422 7262.2 13774 FALSE FALSE TRUE 10787.11285 9062.079859 12817.44772 9475.08956 8841.656014 10174.51724 9134.933048 8620.736591 8719.656927 10340.39529 1.043201207 0.876376541 1.239551039 0.916317925 0.855059769 0.983958248 0.883422035 0.833695071 0.843261469 1 13.33600372 -5.492690307 24.99532936 0.894120096 1.042469341 0.336431131 0.096740859 780.9299846 646591.7195 0.026567569 0.039340914 3.22E-06 5.492690307 0.148349245 LVDVS(ph)PDRGS(ph)PPSR ddPTM_HeLa_A485_30min_R1 1 LVDVSPDRGSPPSR 14 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 2 0 LVDVS(1)PDRGS(0.984)PPS(0.016)R 62.203 0.026903 126860000 152940 167750 204240 186060 213850 142480 147890 139120 184610 260090 TRUE FALSE FALSE 186960.9754 187366.9033 279796.8751 196223.9867 192558.3431 149940.0325 116292.0933 105000.6019 221659.5337 195254.3496 0.957525278 0.959604248 1.432986644 1.00496602 0.986192336 0.7679216 0.595592844 0.53776319 1.135234806 1 17.57499516 -6.04951339 2.421925604 0.765129706 1.104202829 0.281665676 0.207911637 0.343935168 4.009283362 0.075432556 0.07974475 8.92E-07 6.04951339 0.339073123 LVDVS(ph)PDRGS(ph)PPSR ddPTM_HeLa_A486_30min_R1 3 LVDVSPDRGSPPSR 14 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 2 0 LVDVS(1)PDRGS(0.971)PPS(0.03)R;LVDVS(1)PDRGS(0.998)PPS(0.002)R;LVDVS(1)PDRGS(0.99)PPS(0.01)R ;; 96.562 0.0010357 365750000 655070 794640 694240 367728 759250 727550 706830 714620 707070 679540 TRUE FALSE FALSE 609152.9758 731669.8324 963068.3204 856089.3679 664017.7853 637792.2782 529973.6579 551916.626 768359.3969 509378.7609 1.195874313 1.436396427 1.890672314 1.680653835 1.303583573 1.252098295 1.040431401 1.083509303 1.508424488 1 18.95837928 -5.946596198 3.934062183 1.180553821 1.565624714 0.407783214 0.21185745 0.23403604 7.540421494 0.072493072 0.081432175 1.13E-06 5.946596198 0.385070893 LVDVS(ph)PDRGS(ph)PPSRVPQALNFSPEESDSTFSK ddPTM_HeLa_A485_30min_R1 3 LVDVSPDRGSPPSRVPQALNFSPEESDSTFSK 32 2 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 2 0 LVDVS(1)PDRGS(0.997)PPS(0.003)RVPQALNFSPEESDSTFSK;LVDVS(0.996)PDRGS(0.882)PPS(0.122)RVPQALNFSPEESDSTFSK;LVDVS(0.898)PDRGS(0.789)PPS(0.284)RVPQALNFS(0.017)PEES(0.008)DS(0.002)T(0.003)FS(0.001)K ;; 271.49 1.23E-77 615160000 215038 289310 218718 205726 328238 318692 391264 462142 253601 309768 TRUE FALSE FALSE 262872.4612 323142.2878 299630.8898 216964.2905 295557.4722 335378.2203 307667.2501 348800.9499 304496.3945 232548.5385 1.130398251 1.389569206 1.28846602 0.932984967 1.270949601 1.442185888 1.323023796 1.499906008 1.309388554 1 17.82717235 -5.999998873 25 1.34775435 1.194139087 0.103710192 0.165661986 0.106651414 1699059.552 0.050946322 0.057194194 1.00E-06 5.999998873 -0.153615263 LVDVS(ph)PDRGS(ph)PPSRVPQALNFSPEESDSTFSK ddPTM_HeLa_A486_30min_R1 2 LVDVSPDRGSPPSRVPQALNFSPEESDSTFSK 32 2 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 2 0 LVDVS(1)PDRGS(0.994)PPS(0.006)RVPQALNFSPEESDSTFSK;LVDVS(0.794)PDRGS(0.811)PPS(0.313)RVPQALNFS(0.073)PEES(0.006)DS(0.001)T(0.001)FSK ; 224.31 2.93E-39 341410000 79447 74586 57648 44030 92980 67517 98958 91455 63084 99565 TRUE FALSE FALSE 73878.17556 68675.53372 79970.84947 102504.0652 81317.5814 59187.439 74197.66173 70632.69295 68552.17191 74633.27594 0.989882524 0.920173111 1.071517342 1.373436498 1.089562 0.793043562 0.994163271 0.946396792 0.918520205 1 16.18753139 -6.149151618 10.7583275 0.931128822 1.094827427 0.297574313 0.121600227 0.678522081 61.05103893 0.043844726 0.043855958 7.09E-07 6.149151618 0.163698604 LVDVS(ph)PDRGSPPSR ddPTM_HeLa_A485_30min_R1 2 LVDVSPDRGSPPSR 14 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LVDVS(1)PDRGSPPSR;LVDVS(1)PDRGSPPSR ; 144.3 4.48E-08 1999470000 458780 569580 601000 488400 742970 504480 622760 526550 499860 603530 TRUE FALSE FALSE 560834.0282 636187.4263 823334.9097 515080.0553 668997.2981 530893.7927 489702.2385 397412.7869 600177.317 453081.0781 1.237822666 1.404135942 1.817191115 1.136838593 1.476550954 1.171741259 1.080826947 0.87713393 1.324657652 1 18.78940972 -6.424189071 2.645025672 1.060385232 1.423818915 0.409049401 0.196217865 0.283057927 3.87017207 0.077525186 0.06487266 3.77E-07 6.424189071 0.363433683 LVDVS(ph)PDRGSPPSR ddPTM_HeLa_A486_30min_R1 2 LVDVSPDRGSPPSR 14 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LVDVS(1)PDRGSPPSR;LVDVS(1)PDRGSPPSR ; 135.08 5.57E-06 2378600000 660810 790760 681210 213590 776400 648690 725710 697530 562790 570360 TRUE FALSE FALSE 614490.6314 728097.2977 944992.7554 497248.3142 679016.6724 568661.2232 544129.6822 538717.646 611573.0903 427538.1436 1.437276745 1.702999624 2.210312155 1.163050179 1.588201386 1.330083015 1.272704413 1.260045809 1.430452696 1 18.70569361 -5.286264473 24.99776475 1.316026951 1.775476644 0.489596918 0.228991182 650.0671771 654587.2914 0.063796183 0.094671545 5.17E-06 5.286264473 0.459449693 LVDVVAVILK ddPTM_HeLa_A486_30min_R1 1 LVDVVAVILK 10 0 J3KR97;Q9BTW9;Q9BTW9-4;Q9BTW9-5 J3KR97 TBCD Tubulin-specific chaperone D 0 0 161.92 6.65E-06 0 4491.5 2654.5 2895.2 2184.3 4591 3499 4404.3 3913.8 3506.3 3604 FALSE FALSE TRUE 4176.669044 2444.147752 4016.298976 5085.160788 4015.153971 3067.328955 3302.297556 3022.713178 3810.228907 2701.534942 1.546035544 0.904725575 1.48667297 1.88232279 1.486249135 1.135402288 1.222378251 1.118887315 1.410394087 1 11.39956363 -6.25866889 24.7740892 1.187653208 1.45509664 0.254029126 0.242726162 371.101454 3318446.794 0.087685338 0.083942111 5.51E-07 6.25866889 0.267443431 LVEALCAEHQINLIK ddPTM_HeLa_A485_30min_R1 1 LVEALCAEHQINLIK 15 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 71.513 0.031656 92668000 267430 242350 149000 295070 292710 290520 437940 423140 218470 437360 FALSE FALSE TRUE 326918.8809 270690.7243 204121.3004 311188.9269 263566.7646 305731.178 344370.5414 319364.2515 262314.9251 328334.201 0.995689392 0.824436576 0.621687597 0.947781029 0.802739294 0.931158487 1.048841517 0.972680429 0.798926595 1 18.32480551 -6.364258748 5.103775066 0.957267583 0.831985469 0.205467451 0.110030555 0.365554905 14.6005287 0.040235259 0.03530271 4.32E-07 6.364258748 -0.125282114 LVEPHS(ph)PS(ph)PSSK ddPTM_HeLa_A485_30min_R1 1 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 2 0 LVEPHS(1)PS(0.865)PS(0.116)S(0.02)K 68.944 0.012258 754120000 1057000 1089700 895170 1345600 1337900 1140000 1495600 1452400 1048500 1868100 TRUE FALSE FALSE 1292126.003 1217130.936 1226330.634 1419106.721 1204693.978 1199688.637 1176052.842 1096196.623 1258924.333 1402417.05 0.921356456 0.867880875 0.874440762 1.011900647 0.859012644 0.855443563 0.838589949 0.7816481 0.897681851 1 20.41948401 LVEPHS(ph)PS(ph)PSSK ddPTM_HeLa_A486_30min_R1 4 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 2 0 LVEPHS(0.999)PS(0.982)PS(0.017)S(0.002)K;LVEPHS(0.999)PS(0.961)PS(0.033)S(0.006)K;LVEPHS(1)PS(0.911)PS(0.082)S(0.007)K;LVEPHS(0.999)PS(0.966)PS(0.028)S(0.006)K ;;; 95.347 0.0015104 2920460000 3614640 3610620 2196600 1577930 3606310 3719910 4587350 4205380 2867960 4582010 TRUE FALSE FALSE 3361272.402 3324501.322 3047182.347 3673500.784 3153972.972 3260985.325 3439546.51 3247906.777 3116557.082 3434644.872 0.978637538 0.967931604 0.887189931 1.069543118 0.918282119 0.949438864 1.001427116 0.945631033 0.907388449 1 21.71172951 LVEPHS(ph)PSPS(ph)SK ddPTM_HeLa_A485_30min_R1 1 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 2 0 LVEPHS(0.915)PS(0.163)PS(0.818)S(0.104)K 88.78 0.0011985 0 288340 269600 207140 335960 342410 287040 427790 370980 275330 462440 TRUE FALSE FALSE 352480.2382 301127.3748 283769.7058 354312.6441 308318.4581 302068.9706 336389.1718 279996.5733 330586.2055 347162.2186 1.015318544 0.867396735 0.817398008 1.020596785 0.888110634 0.870108999 0.968968263 0.806529508 0.952252831 1 18.40525042 -8.000119459 24.99999999 1.000000027 0.90483263 0.149841142 0.070651946 5.689077339 1190848.32 0.065257319 0.016849367 1.00E-08 8.000119459 -0.095167398 LVEPHS(ph)PSPS(ph)SK ddPTM_HeLa_A486_30min_R1 1 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 2 0 LVEPHS(0.92)PS(0.331)PS(0.678)S(0.071)K 84.297 0.007516 384830000 264990 263280 150800 108000 253340 264000 325470 293170 195570 315530 TRUE FALSE FALSE 246415.5694 242416.734 209193.7986 251429.458 221563.7349 231430.3642 244033.9635 226421.5909 212522.1651 236519.2342 1.041841566 1.024934546 0.884468442 1.063040217 0.936768359 0.978484329 1.03177217 0.957307306 0.898540729 1 17.85159799 -4.548050229 24.99931189 0.970930658 1.037614976 0.199295333 0.052129151 294.0637413 292051.3403 0.012788774 0.033838408 2.83E-05 4.548050229 0.066684318 LVEPHS(ph)PSPSSK ddPTM_HeLa_A485_30min_R1 6 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 LVEPHS(0.999)PS(0.001)PSSK;LVEPHS(0.999)PS(0.001)PSSK;LVEPHS(0.999)PS(0.001)PSSK;LVEPHS(0.992)PS(0.008)PSSK;LVEPHS(0.983)PS(0.017)PSSK;LVEPHS(0.986)PS(0.014)PSSK ;;;;; 192.65 1.56E-13 5697890000 4492140 5193770 4523390 4966600 6329720 5654890 7238450 7340280 5003900 7088340 TRUE FALSE FALSE 5491401.045 5801136.222 6196780.195 5237912.782 5699510.852 5950971.296 5691896.025 5540064.821 6008136.832 5321347.289 1.031956899 1.090163056 1.164513394 0.984320793 1.071065379 1.118320413 1.069634383 1.041101909 1.129063093 1 22.34336013 -10.03198615 4.387829612 0.999995719 1.077633449 0.183458854 0.049234978 32443436.48 1.191207614 1439.334285 0.011687876 9.29E-11 10.03198615 0.07763773 LVEPHS(ph)PSPSSK ddPTM_HeLa_A486_30min_R1 6 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 LVEPHS(0.997)PS(0.003)PSSK;LVEPHS(0.998)PS(0.002)PSSK;LVEPHS(0.968)PS(0.032)PSSK;LVEPHS(0.998)PS(0.002)PSSK;LVEPHS(0.957)PS(0.032)PS(0.008)S(0.003)K;LVEPHS(0.992)PS(0.008)PSSK ;;;;; 218.28 4.79E-23 6192240000 6858710 7419550 5114620 1586110 7738320 7180540 8450060 8256940 6190140 7604510 TRUE FALSE FALSE 6377949.847 6831597.836 7095137.838 3692544.238 6767707.749 6294677.981 6335765.612 6377015.01 6726706.319 5700291.199 1.118881409 1.19846471 1.244697436 0.647781685 1.187256495 1.104273056 1.111481044 1.118717411 1.180063629 1 22.44260419 LVEQANS(ph)PK ddPTM_HeLa_A485_30min_R1 6 LVEQANSPK 9 0 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 0 LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK ;;;;; 178.49 4.09E-08 10048520000 8911570 8381150 6935690 15446190 11584730 9475550 14499120 12404430 7654330 19661000 TRUE FALSE FALSE 10893918 9361252.586 9501490.349 16289976.25 10431313.6 9971675.146 11401264.57 9362224.093 9190483.821 14759874.53 0.738076599 0.634236596 0.643737881 1.103666309 0.706734572 0.67559349 0.772449965 0.634302417 0.622666798 1 23.81517712 LVEQANS(ph)PK ddPTM_HeLa_A486_30min_R1 6 LVEQANSPK 9 0 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 0 LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK ;;;;; 182.71 3.18E-08 10455330000 12248460 12038450 5926740 8199780 10878360 13018680 17580600 15637230 8977220 21520340 TRUE FALSE FALSE 11389906.21 11084479.38 8221732.452 19089502.23 9513894.652 11412567.63 13181747.93 12076974.09 9755372.658 16131506.79 0.706065859 0.687132301 0.509669218 1.183367585 0.589770985 0.707470652 0.817143005 0.748657534 0.604740325 1 23.94337787 -11.07442222 2.641602817 1.420651135 0.732507755 0.180806629 0.173331707 50395457.87 26266316.36 127076534.5 0.04287155 8.43E-12 11.07442222 -0.68814338 LVEQLTEYS(ph)TDK ddPTM_HeLa_A485_30min_R1 1 LVEQLTEYSTDK 12 0 Q9HBI0-2;Q9HBI0 Q9HBI0-2 PARVG Gamma-parvin 1 0 LVEQLT(0.015)EY(0.002)S(0.965)T(0.018)DK 58.04 0.034506 1115200000 785880 850430 674450 890280 935540 883840 1191100 1253800 736460 1093600 TRUE FALSE FALSE 960696.2947 949880.3907 923957.1212 938913.7421 842394.3527 930116.4957 936611.7546 946303.5841 884260.7668 820985.6462 1.170174289 1.156999998 1.125424209 1.143642092 1.026076834 1.132926623 1.140838161 1.152643275 1.07707214 1 19.64699747 -14 0.186788836 0.474123977 1.148745626 0.510271672 0.038746442 123.3162299 1.20031938 24.11639503 0.117285281 1.00E-14 14 0.674621649 LVES(ph)PK ddPTM_HeLa_A485_30min_R1 3 LVESPK 6 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 LVES(1)PK;LVES(1)PK;LVES(1)PK ;; 114.28 0.0079458 1317070000 4873000 4302100 3035380 8413000 4976400 4157300 6718800 5625000 3620700 10344900 TRUE FALSE FALSE 5956982.038 4805193.172 4158293.375 8872580.887 4480932.143 4374969.8 5283273.492 4245459.93 4347341.279 7766106.814 0.767048687 0.618739001 0.535441177 1.142474743 0.576985644 0.563341441 0.680298845 0.546665148 0.559783864 1 22.88876012 -10.06494696 4.483926753 1.000020254 0.66577299 0.250710132 0.173408966 108452522.9 0.126170135 24012.92912 0.043539038 8.61E-11 10.06494696 -0.334247265 LVES(ph)PK ddPTM_HeLa_A486_30min_R1 4 LVESPK 6 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 LVES(1)PK;LVES(1)PK;LVES(1)PK;LVES(1)PK ;;; 126.52 0.0055541 2287350000 5719500 5793800 2631170 4048820 4027870 5923800 8016600 6719000 4037150 11555000 TRUE FALSE FALSE 5318592.586 5334678.187 3650029.489 9425857.576 3522656.986 5192981.785 6010761.889 5189230.375 4387093.413 8661552.79 0.614046086 0.615903212 0.421405905 1.088241082 0.4067004 0.599543974 0.693958928 0.599110864 0.506501954 1 23.04619425 -10.0486276 4.192368003 1.00003685 0.619444164 0.29063539 0.179835798 102742266.9 180014012.4 53999.13821 0.042970472 8.94E-11 10.0486276 -0.380592686 LVES(ph)PKEGK ddPTM_HeLa_A485_30min_R1 3 LVESPKEGK 9 1 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 LVES(1)PKEGK;LVES(1)PKEGK;LVES(1)PKEGK ;; 86.772 0.0019864 1187010000 1105630 959470 744750 2971750 2532410 1692740 3595990 3666240 1207550 4706370 TRUE FALSE FALSE 1351573.579 1071671.67 1020264.017 3134089.178 2280274.369 1781369.249 2827677.36 2767088.892 1449894.209 3533158.573 0.382539745 0.303318305 0.28876825 0.887050245 0.645392592 0.504186045 0.80032563 0.783177102 0.410367714 1 21.75252707 -5.246525256 24.81106459 0.70102414 0.322719673 0.543154214 0.164933631 568.6571174 946013.5436 0.043358499 0.074710838 5.67E-06 5.246525256 -0.378304466 LVES(ph)PKEGK ddPTM_HeLa_A486_30min_R1 2 LVESPKEGK 9 1 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 LVES(1)PKEGK;LVES(1)PKEGK ; 90.614 0.0016816 1061610000 1392350 1169350 630310 2227210 1691660 2166130 3617900 3408500 1013170 3609400 TRUE FALSE FALSE 1294753.455 1076686.447 874382.9123 5185057.437 1479476.229 1898894.904 2712663.154 2632458.957 1100992.391 2705582.747 0.478548829 0.397949924 0.323177295 1.916429074 0.546823501 0.701843219 1.002616962 0.972972998 0.40693355 1 21.36750793 LVEWIIVQCGPDVGRPDR ddPTM_HeLa_A485_30min_R1 2 LVEWIIVQCGPDVGRPDR 18 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 ; ; 125.73 1.54E-05 141203000 84630 107979 117124 75861 133934 98866 112504 127884 102784 99592 FALSE FALSE TRUE 103455.6515 120606.2048 160453.0415 80005.09434 120599.0607 104042.4709 88466.60133 96520.24849 123411.806 74765.54725 1.383734291 1.613125419 2.14608262 1.0700797 1.613029866 1.391583085 1.183253578 1.290972273 1.650650741 1 16.19008599 -5.27948137 24.99736379 1.336564457 1.704195331 0.323742869 0.263483695 996.2064635 1380251.993 0.073158708 0.108756379 5.25E-06 5.27948137 0.367630874 LVEWIIVQCGPDVGRPDR ddPTM_HeLa_A486_30min_R1 1 LVEWIIVQCGPDVGRPDR 18 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 102.36 0.00060517 0 30978 37361 40069 14811 46506 32849 28071 35623 34900 25589 FALSE FALSE TRUE 28806.60217 34400.37829 55584.78989 34480.75651 40672.78383 28796.42436 21047.3389 27512.42054 37925.1601 19181.34784 1.501802814 1.793428625 2.89785631 1.797619061 2.120434088 1.501272205 1.09728154 1.434331975 1.977189529 1 14.22741648 -6.321920804 4.990417937 1.401307171 2.046116628 0.356137078 0.417552163 0.256228342 13.26828342 0.152901857 0.135597454 4.77E-07 6.321920804 0.644809457 LVFDFVEYEKDT(ph)PK ddPTM_HeLa_A485_30min_R1 2 LVFDFVEYEKDTPK 14 1 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 LVFDFVEYEKDT(1)PK;LVFDFVEYEKDT(1)PK ; 206.74 5.84E-22 166423000 234090 181628 98486 482620 260990 224250 435060 378570 153018 634380 TRUE FALSE FALSE 286162.5129 202867.8146 134920.0697 508984.3085 235004.9192 235991.3832 342105.8769 285725.1139 183727.309 476240.7409 0.600877851 0.425977446 0.283302242 1.068754235 0.493458243 0.495529599 0.718346516 0.59995941 0.385786627 1 18.86133152 -11.12711726 2.427496754 1.87983951 0.567685417 0.289351581 0.205102494 18394847.91 5747446.753 88998057.35 0.053290982 7.46E-12 11.12711726 -1.312154093 LVFDFVEYEKDT(ph)PK ddPTM_HeLa_A486_30min_R1 1 LVFDFVEYEKDTPK 14 1 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 LVFDFVEYEKDT(1)PK 155.79 2.90E-08 93760000 213810 170630 66323 218100 146210 254470 358410 301530 141490 507850 TRUE FALSE FALSE 198823.0231 157108.6574 92005.04179 507747.8222 127870.9784 223076.0787 268732.0271 232878.2014 153754.4671 380681.0545 0.522282422 0.412704167 0.241685371 1.333788 0.335900558 0.585992069 0.705924353 0.61174098 0.403893142 1 18.53822325 -11.3206979 2.208879118 3.151028764 0.579102021 0.166424952 0.286593695 11450550.66 1249047.324 123356765.9 0.070145656 4.78E-12 11.3206979 -2.571926743 LVFDFVEYEKDT(ph)PKK ddPTM_HeLa_A486_30min_R1 1 LVFDFVEYEKDTPKK 15 2 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 LVFDFVEYEKDT(1)PKK 82.482 0.0032088 97709000 60020 47025 12099 58081 32639 67183 98820 87879 37164 149480 TRUE FALSE FALSE 55812.90794 43298.56774 16784.05682 135215.5033 28545.11227 58894.64453 74094.19079 67870.87009 40385.40544 112049.235 0.498110566 0.386424483 0.149791802 1.206750793 0.254755084 0.525613981 0.661264584 0.605723636 0.360425535 1 16.77377327 -11.17683979 2.279509882 2.210153582 0.521673695 0.218784778 0.273913567 23602296.75 4958481.11 147480597 0.068173201 6.66E-12 11.17683979 -1.688479886 LVFDNQLTIKS(ph)PSKR ddPTM_HeLa_A486_30min_R1 1 LVFDNQLTIKSPSKR 15 2 J3QR52;J3QLN7;Q99741 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LVFDNQLTIKS(0.897)PS(0.103)KR 188.1 2.40E-18 170600000 181450 151370 96476 124430 189850 212980 291250 279540 145810 298250 TRUE FALSE FALSE 168731.292 139374.8899 133834.0909 289679.3283 166037.2427 186704.693 218376.1695 215894.8443 158448.9282 223566.2587 0.754726107 0.623416479 0.59863278 1.295720249 0.742675767 0.835120175 0.976785006 0.965686171 0.708733639 1 17.77034294 LVFGFLNGR ddPTM_HeLa_A485_30min_R1 2 LVFGFLNGR 9 0 P00491;G3V5M2;G3V2H3 P00491 PNP Purine nucleoside phosphorylase 0 0 ; ; 170.17 3.97E-06 147105000 52711 79287 87076 56441 92139 63461 81250 78131 68585 79457 FALSE FALSE TRUE 64436.3801 88558.92494 119289.0359 59524.22891 82965.31764 66783.71983 63890.27375 58969.24975 82349.3804 59649.8322 1.080244113 1.484646673 1.999821819 0.997894323 1.390872607 1.119596106 1.07108891 0.988590371 1.380546724 1 15.86423046 -5.312336142 24.99997324 1.142329761 1.517881373 0.33746123 0.247743054 399.8207772 196387.0678 0.069862252 0.103622598 4.87E-06 5.312336142 0.375551612 LVFGFLNGR ddPTM_HeLa_A486_30min_R1 2 LVFGFLNGR 9 0 P00491;G3V5M2;G3V2H3 P00491 PNP Purine nucleoside phosphorylase 0 0 ; ; 195.98 2.52E-11 114381000 79579 86577 72083 26046.3 92154 77317 81814 86950 69813 83067 FALSE FALSE TRUE 74000.92305 79716.32321 99995.46805 60637.10271 80595.18602 67778.41464 61343.27186 67153.38311 75864.44705 62266.48252 1.18845517 1.280244523 1.605927684 0.973832153 1.294359064 1.088521656 0.985173232 1.078483646 1.218383374 1 15.92616816 -5.281440264 24.99961618 1.098449876 1.350412718 0.442646382 0.137024457 762.4315513 952980.9036 0.038671379 0.057439677 5.23E-06 5.281440264 0.251962842 LVFHTQLAHGSPTGR ddPTM_HeLa_A485_30min_R1 2 LVFHTQLAHGSPTGR 15 0 O14908 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 0 ; ; 75.01 0.011193 15472200 12108.5 55449.3 103586.4 3347.7 100592.8 9410.9 9602.7 11407.5 17584.4 8149.1 FALSE FALSE TRUE 14801.99405 61933.61329 141907.3199 3530.576374 90577.42763 9903.640172 7551.004698 8609.792739 21113.42779 6117.679343 2.419543951 10.12371029 23.19626643 0.5771104 14.80584754 1.618855716 1.234292331 1.40736254 3.451215175 1 12.57876877 -6.281556686 23.39414601 1.736049594 10.40358427 0.34101273 5.892983734 420.6737127 489193.3671 2.053159367 1.813680455 5.23E-07 6.281556686 8.667534677 LVFHTQLAHGSPTGR ddPTM_HeLa_A486_30min_R1 1 LVFHTQLAHGSPTGR 15 0 O14908 O14908 GIPC1 PDZ domain-containing protein GIPC1 0 0 104.55 0.00060316 6036400 2759.2 4241 5587.7 1361.2 5563.8 3367.6 3023.7 3318.6 4414.7 3328.4 FALSE FALSE TRUE 2565.794329 3904.927715 7751.407084 3168.942391 4865.936324 2952.139751 2267.138279 2563.027225 4797.369751 2494.946976 1.028396336 1.565134551 3.106842414 1.270144184 1.950316528 1.183247492 0.908691968 1.027287253 1.922834352 1 11.28479344 -6.268884721 23.67958041 1.191385073 1.816923518 0.197277856 0.578306231 462.5954788 1471258.128 0.205258247 0.184832301 5.38E-07 6.268884721 0.625538444 LVGATAT(ph)SSPPPK ddPTM_HeLa_A486_30min_R1 1 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 0 LVGAT(0.016)AT(0.792)S(0.109)S(0.083)PPPK 89.301 0.0081368 283420000 754610 959440 651130 354180 973850 999510 1090500 1044100 777540 1118700 TRUE FALSE FALSE 701715.7358 883410.4802 903264.9739 824548.9393 851700.6522 876200.6185 817645.3659 806381.2225 844937.7932 838570.2385 0.836800191 1.053472255 1.077148857 0.983279517 1.015658097 1.044874452 0.975046965 0.961614407 1.007593347 1 19.6775721 -4.253240171 24.83122378 1.012927687 0.836800095 0.701076175 0.034552671 588.4411628 1782044.971 0.009325684 0.103654748 5.58E-05 4.253240171 -0.176127592 LVGATATSS(ph)PPPK ddPTM_HeLa_A485_30min_R1 2 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 0 LVGATAT(0.038)S(0.018)S(0.943)PPPK;LVGATAT(0.299)S(0.159)S(0.542)PPPK ; 148.52 7.20E-08 614320000 852800 878200 784600 1099800 1154640 943630 1261160 1307510 945260 1659290 TRUE FALSE FALSE 1042502.418 980897.8507 1074856.19 1159879.289 1039679.987 993037.0077 991702.8633 986841.1224 1134965.012 1245659.54 0.836907987 0.787452606 0.862881193 0.931136681 0.834642175 0.79719777 0.796126736 0.79222379 0.911135808 1 20.24847838 -8.007345735 4.532969204 0.999774509 0.831260336 0.632391642 0.041160866 0.115411275 7.543312632 0.04408973 0.011530237 9.83E-09 8.007345735 -0.168514174 LVGATATSS(ph)PPPK ddPTM_HeLa_A486_30min_R1 1 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 0 LVGATAT(0.003)S(0.013)S(0.984)PPPK 175.15 1.79E-12 229140000 557650 611600 341940 235390 628060 624840 664540 650280 430250 663780 TRUE FALSE FALSE 518561.6147 563134.5886 474348.3255 547999.816 549282.8584 547753.5937 498265.0632 502225.4395 467544.4164 497565.1675 1.042198386 1.131780569 0.953339093 1.1013629 1.103941542 1.100868046 1.001406641 1.009366154 0.939664685 1 18.92452597 -6.875961826 5.32362641 0.985570378 1.072118813 0.417697309 0.049197962 0.216859465 9.228418808 0.021037184 0.014059567 1.33E-07 6.875961826 0.086548435 LVGIIS(ph)SRDIDFLK ddPTM_HeLa_A485_30min_R1 2 LVGIISSRDIDFLK 14 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 LVGIIS(0.5)S(0.5)RDIDFLK;LVGIIS(0.5)S(0.5)RDIDFLK ; 101.15 0.00029941 44250000 40948 51871 46447 57962 79996 81696 110846 160768 55795 85656 TRUE FALSE FALSE 50056.74133 57936.86223 63629.67812 61128.31729 72031.31736 85973.47623 87162.84657 121339.3959 66992.54472 64303.53558 0.77844462 0.900990306 0.989520678 0.950621404 1.120176623 1.336994544 1.355490733 1.886978606 1.041817438 1 15.97261044 -6.017611845 1.602297777 1.393872407 0.892199225 0.406537596 0.233543563 0.333189328 1.736961515 0.090051215 0.09860453 9.60E-07 6.017611845 -0.501673182 LVGIIS(ph)SRDIDFLK ddPTM_HeLa_A486_30min_R1 2 LVGIISSRDIDFLK 14 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 LVGIIS(0.552)S(0.448)RDIDFLK;LVGIIS(0.5)S(0.5)RDIDFLK ; 127.78 1.19E-05 46209000 59831 72736 60974 45091 106341 95207 124692 123135 70348 107489 TRUE FALSE FALSE 55637.15587 66972.13446 84584.76574 104974.1268 93002.72019 83461.32833 93492.74274 95099.84852 76445.82128 80573.05476 0.690518139 0.831197659 1.049789734 1.302844072 1.154265784 1.035846643 1.160347501 1.180293447 0.948776505 1 16.29800983 -4.697773849 2.759588326 1.12322377 0.713219547 0.680103508 0.096626809 0.146801525 2.173484402 0.025996863 0.088538416 2.01E-05 4.697773849 -0.410004223 LVGIISS(ph)R ddPTM_HeLa_A485_30min_R1 6 LVGIISSR 8 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 LVGIIS(0.171)S(0.829)R;LVGIIS(0.115)S(0.885)R;LVGIIS(0.003)S(0.997)R;LVGIIS(0.006)S(0.994)R;LVGIIS(0.004)S(0.996)R;LVGIIS(0.004)S(0.996)R ;;;;; 129.83 0.00055594 2841534000 2916180 3964590 3829460 2876930 3775460 3482730 3802210 4093340 3210020 3636050 TRUE FALSE FALSE 3564874.18 4428214.313 5246136.611 3034089.401 3399561.946 3665080.357 2989836.772 3089441.947 3854241.57 2729649.652 1.305982318 1.622264715 1.921908406 1.111530705 1.245420614 1.342692589 1.09531887 1.131808965 1.411991304 1 21.38028436 -5.281367353 24.91322851 1.20131374 1.617273135 0.541944609 0.179081575 576.5224406 720746.0771 0.050320566 0.074748351 5.23E-06 5.281367353 0.415959395 LVGIISS(ph)R ddPTM_HeLa_A486_30min_R1 5 LVGIISSR 8 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 LVGIIS(0.024)S(0.976)R;LVGIIS(0.043)S(0.957)R;LVGIIS(0.013)S(0.987)R;LVGIIS(0.004)S(0.996)R;LVGIIS(0.004)S(0.996)R ;;;; 142.94 0.00037978 1736199000 2268830 2593110 2081450 709772 2330960 2137360 2329040 2249600 2092890 2506350 TRUE FALSE FALSE 2109796.733 2387622.52 2887443.183 1652385.086 2038589.261 1873674.254 1746289.558 1737415.188 2274303.39 1878743.646 1.122982764 1.270861261 1.536901103 0.879515994 1.085081121 0.997301712 0.929498583 0.924775017 1.210544821 1 20.84133679 -5.274454008 24.99953811 1.000700339 1.306309679 0.544708934 0.12834511 562.2876528 1080085.947 0.035925944 0.053666909 5.32E-06 5.274454008 0.305609339 LVGLNLS(ph)PPMS(ph)PVQLPLR ddPTM_HeLa_A485_30min_R1 2 LVGLNLSPPMSPVQLPLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 2 0 LVGLNLS(1)PPMS(1)PVQLPLR;LVGLNLS(1)PPMS(1)PVQLPLR ; 108.75 0.00024798 112275000 155734 210591 197637 169266 246280 184060 229773 238910 158106 210806 TRUE FALSE FALSE 190376.491 235217.7856 270751.1507 178512.573 221759.4985 193697.097 180680.1215 180316.9479 189836.424 158255.9438 1.202965819 1.486312488 1.710843487 1.127999168 1.401271214 1.223948323 1.141695643 1.139400793 1.199553201 1 17.27190016 -6.262994905 0.868090248 1.106260906 1.439058387 0.409703274 0.152908668 0.609597944 0.990533451 0.09814564 0.091452516 5.46E-07 6.262994905 0.332797481 LVGLNLS(ph)PPMSPVQLPLR ddPTM_HeLa_A485_30min_R1 3 LVGLNLSPPMSPVQLPLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 LVGLNLS(1)PPMSPVQLPLR;LVGLNLS(1)PPMSPVQLPLR;LVGLNLS(0.832)PPMS(0.168)PVQLPLR ;; 239.75 2.67E-45 345200000 333892 475599 474363 351192 515193 449552 550707 589062 420579 484808 TRUE FALSE FALSE 408165.1235 531216.1659 649849.6136 370376.7297 463898.576 473089.8476 433043.9506 444593.6209 504985.3475 363954.2878 1.121473595 1.459568368 1.785525368 1.017646287 1.274606706 1.299860624 1.189830605 1.221564454 1.387496629 1 18.47339774 -5.282873596 24.99960302 1.21495328 1.455927146 0.282621076 0.186240798 1064.682833 1241780.424 0.052268766 0.077604799 5.21E-06 5.282873596 0.240973866 LVGLNLS(ph)PPMSPVQLPLR ddPTM_HeLa_A486_30min_R1 1 LVGLNLSPPMSPVQLPLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 LVGLNLS(0.993)PPMS(0.007)PVQLPLR 156.08 1.30E-08 166310000 215930 286800 258600 96664 309490 250930 271470 302300 232500 300230 TRUE FALSE FALSE 200794.4221 264072.9235 358736.8455 225038.6771 270670.8783 219972.8079 203545.3347 233472.8892 252653.2872 225050.4538 0.892219583 1.173394317 1.594028536 0.999947671 1.202711986 0.977437744 0.90444312 1.037424654 1.122651756 1 17.77988895 -6.259382261 24.19890465 1.004233721 1.186348719 0.174349137 0.177119817 207.7498578 2443874.791 0.061854975 0.058972169 5.50E-07 6.259382261 0.182114998 LVGVLVHSGQASGGHYYSYIIQR ddPTM_HeLa_A485_30min_R1 1 LVGVLVHSGQASGGHYYSYIIQR 23 0 Q93008;Q93008-3;O00507-2;O00507 Q93008 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y 0 0 166.69 6.60E-18 25202000 50616 37938 57268 62065 87587 50400 76425 76831 50071 92588 FALSE FALSE TRUE 61875.35458 42374.51908 78453.81632 65455.45379 78866.53074 53038.86607 60096.17442 57988.07678 60119.79042 69507.51556 0.890196608 0.609639386 1.128709834 0.941703257 1.134647529 0.763066636 0.864599661 0.834270601 0.864939423 1 16.08488136 -9.031731223 0.007453222 1.84178597 3.98E-06 0.017636622 0.149975537 49877.39268 110.8621488 14073.59266 13319.94775 9.30E-10 9.031731223 -1.841781992 LVHDS(ph)LEDLQMTR ddPTM_HeLa_A485_30min_R1 4 LVHDSLEDLQMTR 13 0 A0A087WYY3;A0A2R8Y635;A0A2R8YDN7;Q9H7F0-2;Q9H7F0 A0A087WYY3 ATP13A3 Probable cation-transporting ATPase 13A3 1 0 LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR ;;; 235.64 6.20E-35 629008000 436687 437003 412020 391471 399792 395355 489541 436472 407293 691739 TRUE FALSE FALSE 533826.5166 488106.6994 564443.3436 412856.0695 359987.3047 416055.1765 384946.5662 329426.5576 489032.9692 519301.1978 1.027970894 0.939929855 1.086928638 0.795022371 0.693214855 0.801182778 0.741278025 0.634365103 0.94171354 1 18.98621203 -5.304101234 8.965801791 0.778519941 1.010328297 0.449223257 0.108185572 0.326320419 66.21417963 0.02886892 0.043060563 4.96E-06 5.304101234 0.231808356 LVHDS(ph)LEDLQMTR ddPTM_HeLa_A486_30min_R1 3 LVHDSLEDLQMTR 13 0 A0A087WYY3;A0A2R8Y635;A0A2R8YDN7;Q9H7F0-2;Q9H7F0 A0A087WYY3 ATP13A3 Probable cation-transporting ATPase 13A3 1 0 LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR ;; 247.02 2.00E-35 579838000 311269 356456 417164 97131 494816 397255 361810 347141 404805 389148 TRUE FALSE FALSE 289450.6505 328209.1284 578701.0728 226125.8767 432751.5633 348245.7171 271281.3112 268104.5723 439893.8233 291702.8079 0.992279274 1.12514902 1.983872137 0.775192664 1.483535817 1.193837384 0.929992115 0.919101788 1.508020531 1 18.15413975 -6.527442421 24.56464985 1.079591006 1.282083692 0.060598331 0.337144893 306.5180748 1649845.683 0.125964337 0.097978755 2.97E-07 6.527442421 0.202492685 LVHLQTLVLNGNPLLHAQLR ddPTM_HeLa_A485_30min_R1 2 LVHLQTLVLNGNPLLHAQLR 20 0 Q13045-3;Q13045;J3KT47;J3QQU5;J3QLR6;J3QQQ2;J3KS54 Q13045-3 FLII Protein flightless-1 homolog 0 0 ; ; 249 1.87E-47 60767000 14749.8 13615.8 11633.1 16062.1 18035.5 14174 21386.8 21343 10926 18413 FALSE FALSE TRUE 18030.84212 15208.04937 15936.66778 16939.53185 16239.82229 14916.12872 16817.33547 16108.59579 13118.74798 13822.97797 1.304410827 1.100200652 1.152911321 1.225461828 1.174842522 1.079082146 1.216621737 1.165349162 0.949053671 1 13.75478084 -7.755442703 24.72888372 0.974526801 1.173525387 0.634977896 0.061459762 68.67809039 283222.7208 0.042386519 0.01507347 1.76E-08 7.755442703 0.198998586 LVHLQTLVLNGNPLLHAQLR ddPTM_HeLa_A486_30min_R1 1 LVHLQTLVLNGNPLLHAQLR 20 0 Q13045-3;Q13045;J3KT47;J3QQU5;J3QLR6;J3QQQ2;J3KS54 Q13045-3 FLII Protein flightless-1 homolog 0 0 317.46 8.86E-88 30583000 11785 15913 16363 7202.1 20749 15515 17837 21893 15360 16516 FALSE FALSE TRUE 10958.93236 14651.99593 22699.19182 16766.85277 18146.46694 13600.91704 13373.99394 16908.44182 16691.41717 12380.2861 0.885192173 1.18349413 1.833494932 1.354318684 1.465755056 1.098594728 1.080265337 1.365755338 1.34822548 1 13.59575703 -6.262648846 24.97218681 1.195283962 1.363226256 0.097760994 0.246115803 296.7788552 6127645.509 0.089385993 0.083287755 5.46E-07 6.262648846 0.167942294 LVHSGSGCRS(ph)PSLGSDLTFATR ddPTM_HeLa_A485_30min_R1 1 LVHSGSGCRSPSLGSDLTFATR 22 1 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 0 LVHSGS(0.007)GCRS(0.989)PS(0.004)LGSDLTFATR 175.59 8.37E-15 336870000 43244 105070 94657 24521 128680 69300 91385 125070 85708 57635 TRUE FALSE FALSE 52863.47861 117357.0225 129674.5633 25860.52014 115868.1674 72928.44084 71859.8482 94396.3864 102908.8094 43267.65519 1.221778217 2.712349953 2.997032373 0.597687118 2.677939603 1.685518675 1.660821412 2.181684817 2.378423536 1 15.40100132 LVHSGSGCRS(ph)PSLGSDLTFATR ddPTM_HeLa_A486_30min_R1 2 LVHSGSGCRSPSLGSDLTFATR 22 1 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 0 LVHSGS(0.004)GCRS(0.995)PS(0.001)LGSDLTFATR;LVHS(0.008)GS(0.132)GCRS(0.856)PS(0.003)LGSDLTFATR ; 242.56 5.08E-47 937060000 128627 151133 161219 46193 247800 157013 167859 203384 135231 105469 TRUE FALSE FALSE 119610.9115 139156.6707 223647.3144 107539.6385 216718.6134 137642.3325 125858.9028 157077.903 146952.932 79058.87591 1.512934634 1.760165055 2.828870406 1.360247502 2.741230644 1.741010492 1.591964233 1.98684716 1.858778414 1 16.27063982 -9.68280527 0.454380595 0.75105078 1.995496656 0.270075577 0.462647409 14.84671324 2.476512483 5.84530717 0.250008207 2.08E-10 9.68280527 1.244445875 LVHSLFESIMSTQESSNPNNVLK ddPTM_HeLa_A486_30min_R1 1 LVHSLFESIMSTQESSNPNNVLK 23 0 O15067 O15067 PFAS Phosphoribosylformylglycinamidine synthase 0 0 135.73 3.38E-10 6488900 3215.1 4725.9 3585.6 839.84 4759.4 3456.7 4541.3 4735.9 4116.3 4580.9 FALSE FALSE TRUE 2989.738093 4351.402473 4974.040346 1955.189963 4162.431672 3030.247499 3405.018707 3657.638954 4473.104198 3433.812823 0.870675907 1.267221802 1.448547315 0.569393285 1.212189448 0.882473115 0.991614535 1.065182974 1.302663956 1 11.74559569 LVHTS(ph)PNYR ddPTM_HeLa_A485_30min_R1 2 LVHTSPNYR 9 0 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 LVHT(0.034)S(0.966)PNYR;LVHT(0.327)S(0.673)PNYR ; 73.951 0.0089712 284606000 169427 228145 224469 155407 287448 204763 216261 235382 200909 212441 TRUE FALSE FALSE 207115.4516 254824.5732 307509.424 163896.4909 258828.6678 215484.0741 170055.0707 177654.1954 241229.5935 159483.3684 1.298664894 1.597812836 1.928159827 1.027671365 1.622919496 1.351138217 1.066287177 1.113935561 1.512568965 1 17.28304646 -6.247546467 1.084165456 1.180094976 1.53950664 0.238561696 0.256166777 0.74246776 1.824112677 0.137975639 0.126309119 5.66E-07 6.247546467 0.359411664 LVHTS(ph)PNYR ddPTM_HeLa_A486_30min_R1 1 LVHTSPNYR 9 0 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 LVHT(0.063)S(0.937)PNYR 123.01 0.00023505 272570000 96442 109140 118660 24851 129580 91377 132150 113430 87391 94439 TRUE FALSE FALSE 89681.91383 100491.3489 164608.3298 57854.3839 113326.8681 80103.83479 99084.67226 87604.46516 94966.12224 70790.85971 1.26685725 1.4195526 2.325276604 0.817257823 1.600868651 1.13155618 1.39968172 1.237510966 1.341502598 1 16.11127548 -5.287000077 24.9997982 1.248114698 1.645461621 0.281865005 0.327650901 1046.287206 1023325.417 0.089682598 0.133076688 5.16E-06 5.287000077 0.397346923 LVIGS(ph)LPAHLS(ph)PHMFGGFK ddPTM_HeLa_A485_30min_R1 2 LVIGSLPAHLSPHMFGGFK 19 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 2 0 LVIGS(1)LPAHLS(1)PHMFGGFK;LVIGS(1)LPAHLS(1)PHMFGGFK ; 171.78 4.85E-13 204675000 217885 217618 166650 161772 200802 186665 244210 234920 149110 207870 TRUE FALSE FALSE 266352.7666 243066.5321 228300.7699 170609.1947 180809.4478 196438.4908 192032.5385 177305.5017 179035.0093 156051.8346 1.706822398 1.557601247 1.462980365 1.093285415 1.158649934 1.258802829 1.230568926 1.136196201 1.147279106 1 17.25166579 -5.008720858 2.263862913 1.159875682 1.648767537 0.869663544 0.077570749 0.103554159 1.046955482 0.022329903 0.055131316 9.80E-06 5.008720858 0.488891855 LVIGS(ph)LPAHLS(ph)PHMFGGFK ddPTM_HeLa_A486_30min_R1 2 LVIGSLPAHLSPHMFGGFK 19 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 2 0 LVIGS(1)LPAHLS(1)PHMFGGFK;LVIGS(1)LPAHLS(1)PHMFGGFK ; 140.59 1.50E-07 170671000 174300 250056 159745 89311 196512 194321 231907 216476 153078 199913 TRUE FALSE FALSE 162082.4701 230240.6519 221602.5421 207920.5215 171863.6326 170347.6507 173881.4157 167189.1404 166346.9243 149853.4836 1.081606288 1.536438435 1.478794732 1.387492079 1.146877793 1.136761366 1.160342833 1.115684043 1.110063779 1 17.1931931 -5.782662828 4.917191866 1.118609212 1.392298797 0.531578748 0.118801507 0.143808977 8.871381904 0.036287679 0.043330193 1.65E-06 5.782662828 0.273689586 LVIGSLPAHLS(ph)PHMFGGFK ddPTM_HeLa_A485_30min_R1 2 LVIGSLPAHLSPHMFGGFK 19 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 LVIGSLPAHLS(1)PHMFGGFK;LVIGSLPAHLS(1)PHMFGGFK ; 212.18 2.52E-26 242534000 154103 203022 156865 139175 171192 170166 173499 195773 147110 192474 TRUE FALSE FALSE 188382.6807 226763.6568 214895.8912 146777.7778 154147.5234 179075.6286 136429.5213 147759.3648 176633.6276 144493.774 1.303742545 1.569366282 1.487232877 1.015806936 1.066810833 1.239331105 0.944189618 1.022600218 1.222430716 1 17.14064781 -5.258105392 24.98608933 1.075268331 1.465039165 0.724856733 0.107328819 143.1991046 1073180.433 0.029119311 0.047942297 5.52E-06 5.258105392 0.389770834 LVIGSLPAHLS(ph)PHMFGGFK ddPTM_HeLa_A486_30min_R1 2 LVIGSLPAHLSPHMFGGFK 19 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 LVIGSLPAHLS(1)PHMFGGFK;LVIGSLPAHLS(1)PHMFGGFK ; 195.56 2.81E-19 206320000 281151 374997 227652 78860 323997 283877 317560 282128 256740 328251 TRUE FALSE FALSE 261443.7668 345280.872 315804.9511 183590.0654 283358.2751 248855.142 238103.1292 217893.6132 278994.4299 246054.813 1.062542787 1.403268108 1.283473984 0.746134827 1.151606309 1.011380915 0.967683283 0.88554908 1.133871053 1 17.90862021 -5.222505636 24.79816093 0.987703963 1.265112419 0.450238366 0.133638062 414.1149123 263762.5588 0.034527384 0.059801909 5.99E-06 5.222505636 0.277408456 LVIITAGAR ddPTM_HeLa_A485_30min_R1 2 LVIITAGAR 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 214.11 1.57E-16 873490000 460580 652210 694930 452340 737150 613550 679700 724900 550510 672890 FALSE FALSE TRUE 563034.432 728480.286 952013.5255 477050.1888 663756.7577 645674.5293 534476.5424 547117.1384 660992.3074 505150.9066 1.114586601 1.442104283 1.884612129 0.944371637 1.313977168 1.278181472 1.058053218 1.083076624 1.308504644 1 18.94635491 -5.286362462 24.99350205 1.153824297 1.476601517 0.350984097 0.211060898 865.8626541 868307.2144 0.059721312 0.088623097 5.17E-06 5.286362462 0.322777221 LVIITAGAR ddPTM_HeLa_A486_30min_R1 2 LVIITAGAR 9 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 205.78 9.58E-12 901990000 565150 650790 655830 195023 756960 559840 653970 684010 579160 615130 FALSE FALSE TRUE 525535.9034 599219.0303 909784.9397 454023.3999 662015.0184 490772.6328 490339.789 528275.8548 629362.0551 461097.4442 1.139750198 1.299549667 1.973086061 0.984658244 1.435737775 1.064357738 1.063419013 1.145692438 1.36492202 1 18.81471214 LVILFS(ph)Y(ph)MAGPLCK ddPTM_HeLa_A486_30min_R1 1 LVILFSYMAGPLCK 14 0 Q9H617;Q5U3C3-2;Q5U3C3 Q9H617 RP13-360B22.2;TMEM164 Transmembrane protein 164 2 0 LVILFS(1)Y(1)MAGPLCK 46.926 0.026784 634120000 121150 313260 953250 23652 696340 107630 117010 183640 334990 53787 TRUE FALSE FALSE 112658.0106 288436.1367 1322373.929 55063.05131 608998.5441 94351.7049 87732.86039 141829.1808 364027.2029 40318.38511 2.794209399 7.153960556 32.79828608 1.365705773 15.10473553 2.340165774 2.176001349 3.517729702 9.028814075 1 15.29915023 -6.268197755 24.52570795 3.680116104 12.16492475 0.193470376 8.389261599 723.300281 2624801.193 2.938205599 2.650432127 5.39E-07 6.268197755 8.484808642 LVINGNPITIFQER ddPTM_HeLa_A485_30min_R1 4 LVINGNPITIFQER 14 0 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 396.65 1.10E-155 1592940000 591157 655333 713976 538931 637390 592468 644243 555001 619833 674680 FALSE FALSE TRUE 722657.8352 731968.4937 978105.4334 568371.4359 573929.2136 623488.7084 506595.2201 418886.1345 744227.7977 506494.6926 1.426782641 1.44516518 1.931126718 1.122166617 1.13313964 1.230987644 1.000198477 0.827029662 1.46936939 1 18.95018763 -5.353779168 9.564271114 1.104859659 1.584987547 0.548241488 0.203292661 0.309311645 30.09237867 0.056527892 0.08389029 4.43E-06 5.353779168 0.480127888 LVINGNPITIFQER ddPTM_HeLa_A486_30min_R1 4 LVINGNPITIFQER 14 0 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 348.72 8.97E-115 1895730000 803159 934820 821299 240182 865024 768616 770096 763170 887482 851756 FALSE FALSE TRUE 746861.7016 860741.4586 1139327.968 559155.8341 756524.6239 673791.9726 577409.8356 589412.8509 964409.6543 638470.7536 1.169766504 1.348129815 1.784463833 0.875773606 1.184900984 1.055321593 0.904363798 0.92316343 1.510499344 1 19.28426101 -5.279560548 24.98033732 1.059575756 1.425521086 0.36411685 0.223456488 849.6272907 1171223.526 0.062579301 0.093026025 5.25E-06 5.279560548 0.365945329 LVINGNPITIFQERDPS(ph)K ddPTM_HeLa_A485_30min_R1 2 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LVINGNPITIFQERDPS(1)K;LVINGNPITIFQERDPS(1)K ; 157.3 4.31E-09 2118800000 771260 553930 452780 1168450 643270 655100 1049910 781670 489940 1420150 TRUE FALSE FALSE 942824.1262 618707.2949 620282.1637 1232279.465 579223.7801 689400.023 825588.1515 589964.2069 588266.464 1066132.741 0.88434028 0.580328576 0.581805755 1.15584056 0.543294243 0.646636199 0.77437651 0.553368436 0.551776004 1 20.02395564 -10.17533221 4.697125092 1.000040724 0.695616175 0.192709863 0.186117148 7.87E-05 1.38E-05 0.178587338 0.043308006 6.68E-11 10.17533221 -0.304424549 LVINGNPITIFQERDPS(ph)K ddPTM_HeLa_A486_30min_R1 2 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LVINGNPITIFQERDPS(1)K;LVINGNPITIFQERDPS(1)K ; 183.25 4.23E-18 3191300000 884110 1005850 508090 628570 816400 1194080 1489520 1256650 826750 1821540 TRUE FALSE FALSE 822138.4545 926142.7828 704836.0551 1463342.726 713999.4994 1046766.55 1116826.341 970538.2275 898413.3557 1365414.528 0.602116381 0.678286897 0.516206647 1.07172049 0.522917755 0.766629129 0.817939401 0.710801158 0.657978465 1 20.38090758 -14 0.190725353 2.209050525 0.658975979 0.253514968 0.152544155 198.5762675 1.943792388 91.77240302 0.40172163 1.00E-14 14 -1.550074547 LVINGNPITIFQERDPS(ph)KIK ddPTM_HeLa_A485_30min_R1 3 LVINGNPITIFQERDPSKIK 20 2 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LVINGNPITIFQERDPS(1)KIK;LVINGNPITIFQERDPS(1)KIK;LVINGNPITIFQERDPS(1)KIK ;; 200.47 1.36E-26 12922950000 1557100 1043980 766231 2756340 1806090 1712030 2999310 2439320 1242140 3711380 TRUE FALSE FALSE 1903471.523 1166064.38 1049691.732 2906911.875 1626269.338 1801669.243 2358482.916 1841072.945 1491426.104 2786201.269 0.68317804 0.418514051 0.376746556 1.043324439 0.583686956 0.64664002 0.846486915 0.660782466 0.535290153 1 21.40986805 -14 0.115514772 2.030377014 0.476341736 0.240521913 0.185722814 245.8975265 1.859895779 60.97837286 2.077902237 1.00E-14 14 -1.554035278 LVINGNPITIFQERDPS(ph)KIK ddPTM_HeLa_A486_30min_R1 2 LVINGNPITIFQERDPSKIK 20 2 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LVINGNPIT(0.006)IFQERDPS(0.994)KIK;LVINGNPITIFQERDPS(1)KIK ; 246.31 8.22E-47 6881100000 1034579 1081234 529626 879443 1091141 1626467 2253501 2047938 874325 2270424 TRUE FALSE FALSE 962060.3547 995553.0801 734711.3711 2047387.749 954279.9213 1425810.038 1689651.215 1581667.224 950112.195 1701895.052 0.565287709 0.584967374 0.431701925 1.203004701 0.560716079 0.837777885 0.992805762 0.929356497 0.558267206 1 20.69871065 -5.227171355 24.98571563 0.856935144 0.533083795 0.407023962 0.18848344 638.2811361 465386.7885 0.049412796 0.085579795 5.93E-06 5.227171355 -0.323851349 LVINGNPITIFQERDPSK ddPTM_HeLa_A485_30min_R1 4 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 291.01 2.13E-71 4025220000 2216350 2606140 2284140 2528910 3427080 3251800 4499930 4699040 2530360 3705390 FALSE FALSE TRUE 2709369.411 2910905.403 3129138.437 2667057.95 3085867.882 3422059.22 3538483.194 3546593.072 3038180.042 2781704.466 0.97399614 1.04644668 1.124899671 0.958785515 1.10934426 1.230202296 1.272055762 1.274971197 1.092200872 1 21.40753772 -6.022578061 5.089804597 1.195532514 1.033861138 0.36417398 0.089484465 0.183888834 13.36014646 0.02875245 0.030249394 9.49E-07 6.022578061 -0.161671376 LVINGNPITIFQERDPSK ddPTM_HeLa_A486_30min_R1 4 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 326.98 4.12E-103 3375940000 2171710 2201620 1793960 1091850 2982720 2258240 3138110 3171480 1920740 2956810 FALSE FALSE TRUE 2019484.344 2027155.613 2488629.356 2541881.979 2608599.445 1979641.309 2352921.686 2449403.237 2087231.29 2216405.53 0.911152908 0.914614038 1.12282221 1.14684878 1.176950431 0.893176489 1.061593492 1.105124132 0.941719041 1 21.07979044 -4.74532001 24.25969376 1.061728458 0.912883263 0.308908941 0.085302785 203.4387005 306168.4796 0.022381073 0.058772245 1.80E-05 4.74532001 -0.148845195 LVINGNPITIFQERDPSK(ac)IK ddPTM_HeLa_A485_30min_R1 2 LVINGNPITIFQERDPSKIK 20 2 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; LVINGNPITIFQERDPSK(1)IK;LVINGNPITIFQERDPSK(1)IK 242.16 4.95E-37 56738000 43249 50008 47021 48738 69455 65355 77275 83515 53228 72973 FALSE TRUE FALSE 52869.59084 55856.00059 64416.02461 51400.43353 62539.81633 68776.88674 60764.56497 63032.8153 63910.37136 54782.17407 0.96508749 1.019601751 1.175857397 0.938269326 1.141608879 1.255461068 1.10920324 1.150608138 1.166627146 1 15.7414189 -5.896251561 10.75307844 1.15011228 1.035238494 0.293401919 0.083620112 0.443808849 42.76897102 0.025208971 0.028596251 1.27E-06 5.896251561 -0.114873786 LVINGNPITIFQERDPSK(ac)IK ddPTM_HeLa_A486_30min_R1 2 LVINGNPITIFQERDPSKIK 20 2 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; LVINGNPITIFQERDPSK(1)IK;LVINGNPITIFQERDPSK(1)IK 215.06 1.16E-28 49424000 46941 52350 41190 21220.3 67096 55579 66135 63108 44457 67790 FALSE TRUE FALSE 43650.6783 48201.59534 57139.87111 49401.93081 58680.19403 48722.22807 49587.3235 48739.68604 48310.56856 50814.94276 0.859012643 0.948571281 1.124469851 0.972192984 1.154782252 0.958816943 0.975841373 0.959160503 0.950715792 1 15.63296518 -9.803587663 13.78364313 1.000004627 0.994250766 0 0.082650445 0 0 0.081458629 0.01975662 1.57E-10 9.803587663 -0.00575386 LVISPLNQLLSMFTGPHK ddPTM_HeLa_A485_30min_R1 2 LVISPLNQLLSMFTGPHK 18 0 Q6XZF7;A0A1C7CYY6;A0A1B0GTX1;Q6XZF7-2 Q6XZF7 DNMBP Dynamin-binding protein 0 0 ; ; 123.02 1.09E-06 5464000 3700.8 4412.6 4138.8 3443.7 5483 3051 5246.6 6129.3 3308.5 5608.9 FALSE FALSE TRUE 4524.030192 4928.615185 5669.91435 3631.820611 4937.093268 3210.745642 4125.621049 4626.079565 3972.485603 4210.704454 1.074411715 1.170496585 1.346547689 0.862520904 1.172510045 0.762519829 0.979793546 1.098647415 0.943425416 1 12.0398459 -5.267369157 24.99845234 0.977988431 1.194486456 0.406928108 0.123270108 474.2652394 1999383.275 0.033926073 0.051820584 5.40E-06 5.267369157 0.216498025 LVIVGHSLGGGAAALLATMLR ddPTM_HeLa_A485_30min_R1 1 LVIVGHSLGGGAAALLATMLR 21 0 E7ET49;Q8NCG7-2;Q8NCG7-4;Q8NCG7 E7ET49 DAGLB Sn1-specific diacylglycerol lipase beta 0 0 122.94 9.27E-07 0 3350 3691.4 2844.3 2324.9 3620.5 2853.7 4130.8 4260.6 2566 4136.6 FALSE FALSE TRUE 4095.195943 4123.077119 3896.524931 2451.9034 3260.030308 3003.115319 3248.220834 3215.68117 3080.972663 3105.421748 1.318724564 1.32770279 1.254749031 0.789555686 1.049786654 0.967055544 1.045983798 1.035505458 0.992126968 1 11.6005735 -5.097620437 6.578543552 0.989628965 1.315731719 0.811028389 0.070649674 0.093972531 5.341996652 0.018846426 0.033107106 7.99E-06 5.097620437 0.326102754 LVIVGHSLGGGAAALLATMLR ddPTM_HeLa_A486_30min_R1 1 LVIVGHSLGGGAAALLATMLR 21 0 E7ET49;Q8NCG7-2;Q8NCG7-4;Q8NCG7 E7ET49 DAGLB Sn1-specific diacylglycerol lipase beta 0 0 97.384 5.71E-05 1603400 2144.5 3172.8 2786.6 1156.5 3719 3919 3351.6 2875.8 2534 2882.6 FALSE FALSE TRUE 1994.181624 2921.375773 3865.646148 2692.390446 3252.528342 3435.513625 2512.99423 2221.043118 2753.64916 2160.778197 0.922899734 1.352001689 1.789006457 1.246028144 1.505257849 1.589942748 1.163004252 1.027890378 1.274378445 1 11.07733527 -6.900971515 7.150563252 1.110068668 1.413300283 0.28175374 0.223413211 0.298473462 18.66853025 0.095704097 0.064330829 1.26E-07 6.900971515 0.303231615 LVLAES(ph)PQPK ddPTM_HeLa_A485_30min_R1 2 LVLAESPQPK 10 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 0 LVLAES(1)PQPK;LVLAES(1)PQPK ; 134.98 4.96E-05 837770000 781350 850320 673950 940790 1083730 932690 1204860 1281910 793160 1348930 TRUE FALSE FALSE 955158.6119 949757.5272 923272.1504 992182.9755 975830.036 981524.2062 947431.8182 967519.5625 952339.9367 1012666.576 0.943211353 0.937877826 0.911723732 0.979772611 0.963624216 0.969247163 0.935581208 0.955417692 0.940427935 1 19.94972781 LVLAES(ph)PQPK ddPTM_HeLa_A486_30min_R1 2 LVLAESPQPK 10 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 0 LVLAES(1)PQPK;LVLAES(1)PQPK ; 158.01 1.25E-06 829210000 1356910 1418680 792220 549040 1337730 1357610 1704160 1616370 957350 1771510 TRUE FALSE FALSE 1261797.616 1306258.63 1098988.8 1278192.867 1169939.43 1190121.881 1277761.143 1248357.836 1040333.869 1327912.365 0.950211512 0.9836934 0.827606421 0.962558148 0.881036626 0.896235258 0.962233033 0.940090528 0.783435636 1 20.34072851 LVLEVAQHLGESTVR ddPTM_HeLa_A485_30min_R1 2 LVLEVAQHLGESTVR 15 0 P06576 P06576 ATP5B "ATP synthase subunit beta, mitochondrial" 0 0 ; ; 113.47 0.00029539 36289000 19514 26732 26936 19164.3 26991 26086 28433 28932 23061 29747 FALSE FALSE TRUE 23854.82198 29858.07486 36900.7473 20211.19718 24303.68127 27451.82262 22358.05727 21836.38164 27689.13117 22331.62035 1.068208289 1.337031276 1.652399007 0.905048396 1.088308008 1.229280374 1.001183834 0.977823431 1.239906945 1 14.44680031 -5.28006997 24.99471844 1.067552032 1.350994757 0.393724539 0.164538 824.0675201 1105563.319 0.046744755 0.069464222 5.25E-06 5.28006997 0.283442725 LVLEVAQHLGESTVR ddPTM_HeLa_A486_30min_R1 1 LVLEVAQHLGESTVR 15 0 P06576 P06576 ATP5B "ATP synthase subunit beta, mitochondrial" 0 0 132.81 1.22E-05 16675000 14505 16125 17316 4132.8 23575 14390 14803 15985 16051 14576 FALSE FALSE TRUE 13488.2744 14847.19627 24021.21894 9621.36726 20618.00367 12614.70811 11099.13283 12345.56445 17442.3136 10926.07473 1.234503217 1.358877424 2.1985223 0.880587723 1.887045823 1.154550781 1.015839001 1.129917629 1.596393402 1 13.41548757 LVLILNK ddPTM_HeLa_A486_30min_R1 2 LVLILNK 7 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 0 0 ; ; 138.38 0.0042414 0 57599 56643 42922 22015 65605 59180 62022 62044 52337 68326 FALSE FALSE TRUE 53561.60754 52154.40239 59542.54789 51252.03258 57376.20916 51878.9733 46503.4396 47917.93561 56873.6133 51216.72487 1.045783534 1.018308034 1.162560629 1.000689378 1.120263143 1.012930316 0.907973708 0.935591562 1.110450023 1 15.64432738 -6.513832151 24.42742478 0.979895817 1.06787829 0.250940909 0.066145969 426.593035 1151886.029 0.023980807 0.019606242 3.06E-07 6.513832151 0.087982473 LVLLELNFLPTTGTK ddPTM_HeLa_A485_30min_R1 1 LVLLELNFLPTTGTK 15 0 K7EJR3;R4GMR5;P48556;K7ENY6 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 0 91.937 0.011322 2175500 2459.3 2046.8 2377.6 2589.7 3486.3 2331.4 3609.4 3260.6 2694.7 4130.6 FALSE FALSE TRUE 3006.362801 2286.155455 3257.17318 2731.168754 3139.191731 2453.468499 2838.222204 2460.932738 3235.501573 3100.917438 0.969507528 0.737251314 1.050390165 0.880761519 1.012342893 0.791207295 0.915284673 0.793614402 1.043401392 1 11.5984794 -7.78685134 24.99960034 1.021700883 0.894610553 0.223442837 0.095369399 376.8319207 370706.3998 0.085976804 0.022232799 1.63E-08 7.78685134 -0.127090329 LVLLELNFLPTTGTK ddPTM_HeLa_A486_30min_R1 1 LVLLELNFLPTTGTK 15 0 K7EJR3;R4GMR5;P48556;K7ENY6 K7EJR3 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 0 100.72 0.0037447 3267400 2815.4 4355.6 2518.1 2441.1 3493.7 2979.1 4705.5 3705.3 3833.1 3138.2 FALSE FALSE TRUE 2618.054999 4010.446393 3493.175757 5683.004166 3055.487569 2611.568931 3528.13413 2861.684076 4165.356194 2352.374294 1.11294151 1.704850458 1.48495746 2.415858812 1.298895153 1.110184267 1.499818349 1.21650882 1.770702989 1 11.19990191 LVLLFSGK ddPTM_HeLa_A486_30min_R1 2 LVLLFSGK 8 0 Q15126 Q15126 PMVK Phosphomevalonate kinase 0 0 ; ; 103.92 0.016664 29973000 47409 50871 38980 18537.1 53670 50227 55872 53458 44877 64179 FALSE FALSE TRUE 44085.87392 46839.79669 54074.09992 43155.30561 46938.20815 44030.50341 41892.23465 41286.78038 48766.97449 48108.16066 0.91639076 0.97363516 1.124010961 0.897047507 0.975680789 0.915239801 0.87079269 0.858207419 1.01369443 1 15.55399402 LVLPAPQIS(ph)DAELQEVVK ddPTM_HeLa_A485_30min_R1 2 LVLPAPQISDAELQEVVK 18 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 LVLPAPQIS(1)DAELQEVVK;LVLPAPQIS(1)DAELQEVVK ; 154.49 1.83E-08 38586000 21699.6 18077.6 20815.7 26823 32594 22020 30748 30774 26587 33871 TRUE FALSE FALSE 26526.60116 20191.61807 28516.29364 28288.27257 29348.82692 23172.93315 24178.43861 23226.62825 31922.76703 25427.58305 1.043221493 0.794083261 1.121470868 1.112503399 1.154212213 0.911330546 0.950874433 0.913442233 1.255438512 1 14.63410672 -4.775649627 24.99999919 1.046434972 0.918652302 0.164864925 0.119815327 385.7095298 678578.5663 0.031772915 0.066642518 1.68E-05 4.775649627 -0.12778267 LVLPAPQIS(ph)DAELQEVVK ddPTM_HeLa_A486_30min_R1 1 LVLPAPQISDAELQEVVK 18 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 LVLPAPQIS(1)DAELQEVVK 61.641 0.019804 19245000 16114 20936 12228 7430.8 17225 17869 21242 23780 15656 19534 TRUE FALSE FALSE 14984.49181 19276.95511 16963.00908 17299.27793 15064.47988 15664.50446 15927.02693 18365.81311 17013.07469 14642.55926 1.023351967 1.316501766 1.158472968 1.181438137 1.028814678 1.0697928 1.087721528 1.254276168 1.161892152 1 13.83788011 -10.24791698 3.12895022 0.999360913 1.145406016 0.184508054 0.089667668 23704678.18 31973222.94 145772.6651 0.022830335 5.65E-11 10.24791698 0.146045103 LVLPSNT(ph)PNVR ddPTM_HeLa_A486_30min_R1 1 LVLPSNTPNVR 11 0 Q03188;H0Y8J2;H0Y9W1 Q03188 CENPC Centromere protein C 1 0 LVLPS(0.007)NT(0.993)PNVR 117.03 0.0014293 60728000 117190 127320 131870 49734 147980 99682 142770 123340 112030 114630 TRUE FALSE FALSE 108975.5862 117230.6995 182933.5956 115783.2654 129418.9685 87384.24833 107047.4359 95258.17449 121740.8506 85925.90188 1.268250711 1.364323178 2.128969165 1.347478035 1.506169452 1.01697214 1.245811025 1.108608375 1.41681202 1 16.39080547 -6.169390793 6.088717592 1.170700694 1.542000548 0.351235688 0.247492252 0.283839427 15.3976379 0.083515477 0.083536671 6.77E-07 6.169390793 0.371299853 LVLVLGDLHIPHR ddPTM_HeLa_A485_30min_R1 2 LVLVLGDLHIPHR 13 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 0 ; ; 98.105 0.0021922 101026000 43141 53846 61450 36976 56806 47266 60064 75600 40008 57970 FALSE FALSE TRUE 52737.56662 60142.8213 84182.91215 38995.90525 51150.19518 49740.77467 47230.83572 57058.98146 48037.23862 43519.14586 1.211824487 1.381985333 1.934387968 0.896063204 1.175349244 1.142963027 1.085288665 1.311123652 1.103818507 1 15.40936262 -5.283865994 24.99982498 1.119105989 1.496658009 0.468875714 0.197940032 719.6922633 802267.4666 0.05584347 0.082897187 5.20E-06 5.283865994 0.37755202 LVLVLGDLHIPHR ddPTM_HeLa_A486_30min_R1 2 LVLVLGDLHIPHR 13 0 Q9UBQ0;F8VXU5;Q9UBQ0-2 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 0 ; ; 92.19 0.0042404 95152000 52341 58740 61568 21477.3 73665 50446 62065 56664 51610 56273 FALSE FALSE TRUE 48672.16619 54085.22847 85408.77845 50000.2398 64425.2488 44222.48542 46535.68054 43762.84417 56083.59635 42181.87452 1.153864468 1.282191204 2.024774371 1.185348929 1.527320669 1.048376487 1.103215091 1.037479834 1.329566241 1 15.36433559 -6.263958867 24.95260835 1.106037983 1.445156306 0.316248303 0.243075815 278.749053 2760673.58 0.084191671 0.07768205 5.45E-07 6.263958867 0.339118323 LVLVNAVYFR ddPTM_HeLa_A485_30min_R1 1 LVLVNAVYFR 10 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237;A0A2R8Y6A7 A0A2R8YD12 SERPINB6 Serpin B6 0 0 122.18 0.005223 13935000 8234.3 10072 11429 9376.7 15657 10450 12068 12188 11132 14494 FALSE FALSE TRUE 10065.99163 11249.83279 15657.0627 9888.925378 14098.1341 10997.14584 9489.573214 9198.87389 13366.09029 10880.91254 0.925105462 1.033905267 1.438947574 0.908832356 1.295675712 1.010682312 0.872130272 0.845413825 1.228397916 1 13.40951193 -6.504625949 23.95818328 0.969003727 1.124772129 0.114649788 0.177643699 861.8771296 1131282.912 0.062239771 0.053810997 3.13E-07 6.504625949 0.155768402 LVLVNAVYFR ddPTM_HeLa_A486_30min_R1 2 LVLVNAVYFR 10 0 A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237;A0A2R8Y6A7 A0A2R8YD12 SERPINB6 Serpin B6 0 0 ; ; 153.71 0.00028629 32158000 20588.3 23232 19780.4 8961.8 29548 22592 25302 27112 19934.4 22894 FALSE FALSE TRUE 19145.16649 21391.01171 27439.90062 20863.5233 25841.81432 19804.82874 18971.17198 20939.18945 21662.32984 17161.19339 1.115608108 1.246475768 1.598950609 1.215738488 1.505828513 1.154047291 1.105469273 1.220147631 1.262285749 1 14.06686226 -6.313021707 24.3532432 1.159466508 1.339387264 0.293218191 0.145500221 365.0907486 172366.7235 0.051147303 0.0451077 4.86E-07 6.313021707 0.179920756 LVLVNYPFIDVGLAGGAVPQS(ph)APPVPSGGSHFR ddPTM_HeLa_A485_30min_R1 1 LVLVNYPFIDVGLAGGAVPQSAPPVPSGGSHFR 33 0 P50548;P50548-2;M0QXN0 P50548 ERF ETS domain-containing transcription factor ERF 1 0 LVLVNYPFIDVGLAGGAVPQS(0.997)APPVPS(0.001)GGS(0.001)HFR 113.51 4.69E-05 82181000 23328 15400 19474 16175 22916 20866 34371 24320 14363 21084 TRUE FALSE FALSE 28517.23312 17200.89604 26678.24298 17058.59929 20634.40258 21958.5115 27027.35506 18355.48187 17245.52235 15828.14682 1.801678582 1.08672836 1.685493778 1.077738252 1.303652462 1.387307797 1.707550187 1.159673465 1.089547788 1 13.95020473 -12.61122159 0.091106309 2.24E-09 1.709879303 0.248987716 0.247238199 240.2119009 2.03283458 51.44424672 6.191753499 2.45E-13 12.61122159 1.7098793 LVLVNYPFIDVGLAGGAVPQS(ph)APPVPSGGSHFR ddPTM_HeLa_A486_30min_R1 2 LVLVNYPFIDVGLAGGAVPQSAPPVPSGGSHFR 33 0 P50548;P50548-2;M0QXN0 P50548 ERF ETS domain-containing transcription factor ERF 1 0 LVLVNYPFIDVGLAGGAVPQS(0.997)APPVPS(0.001)GGS(0.002)HFR;LVLVNYPFIDVGLAGGAVPQS(1)APPVPSGGSHFR ; 142.27 1.80E-09 206870000 31982 76953 94428 6179.2 102730 79348 91504 90293 83128 49561 TRUE FALSE FALSE 29740.22696 70854.96402 130993.0505 14385.48988 89844.64548 69558.85051 68608.73137 69735.25498 90333.60197 37150.60301 0.800531473 1.907235907 3.526000653 0.387220899 2.418389964 1.872347819 1.846773021 1.87709618 2.431551432 1 15.18109801 -5.271426667 24.97982682 1.77144785 2.060854089 0.036183484 0.845645894 3427.563193 8572885.848 0.234419301 0.352319751 5.35E-06 5.271426667 0.289406239 LVMEEAPESY(ph)KNVT(ph)DVVNT(ph)CHDAGIS(ph)K ddPTM_HeLa_A486_30min_R1 1 LVMEEAPESYKNVTDVVNTCHDAGISK 27 1 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 4 0 LVMEEAPES(0.725)Y(0.795)KNVT(0.795)DVVNT(0.795)CHDAGIS(0.891)K 41.914 0.025064 255610000 21063 32127 16712 9327.4 24484 36704 48244 37698 24294 52491 TRUE FALSE FALSE 19586.59247 29581.13952 23183.33396 21714.65858 21412.98842 32175.83366 36172.84093 29114.98834 26399.82348 39346.91194 0.497792368 0.751803332 0.589203392 0.551877073 0.544210139 0.817747367 0.919331128 0.739956121 0.670950328 1 15.26396279 -6.2699475 23.73181996 0.81895266 0.594307927 0.572070539 0.104621632 259.542383 723942.2377 0.036706805 0.032933488 5.37E-07 6.2699475 -0.224644733 LVMEKR ddPTM_HeLa_A485_30min_R1 1 LVMEKR 6 1 Q5TCY1 Q5TCY1 TTBK1 Tau-tubulin kinase 1 0 0 93.593 0.014694 266600000 409420 328720 591690 542730 719560 560320 743950 729450 438280 743910 FALSE FALSE TRUE 500494.0665 367160.9445 810580.7533 572377.9656 647918.0799 589657.4888 584999.005 550551.2438 526238.7759 558466.9276 0.896192848 0.657444383 1.451439133 1.024909332 1.160172694 1.055850328 1.047508771 0.985826047 0.942291745 1 19.09111232 -4.720919179 24.99999953 1.081367428 0.776818412 0.415386081 0.145513057 143.3409801 88436.04381 0.036139961 0.095614846 1.90E-05 4.720919179 -0.304549016 LVNHFVEEFK ddPTM_HeLa_A486_30min_R1 2 LVNHFVEEFK 10 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 154.84 7.90E-06 250220000 353370 388380 241404 169473 464650 415780 471460 441830 314090 537570 FALSE FALSE TRUE 328600.5878 357603.3543 334882.0938 394541.7087 406369.2643 364485.2909 353495.7214 341234.9541 341315.5741 402958.973 0.815469092 0.887443582 0.831057542 0.979111362 1.008463123 0.904522086 0.877249907 0.846823069 0.847023139 1 18.62027343 -5.235288068 24.69467495 0.917776518 0.848935415 0.275085335 0.057903143 1095.462129 1034442.833 0.017213794 0.029802184 5.82E-06 5.235288068 -0.068841104 LVNHFVEEFKR ddPTM_HeLa_A485_30min_R1 3 LVNHFVEEFKR 11 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ;; ;; 198.81 1.79E-14 292090000 341937 345481 300453 407073 425054 363499 483396 465831 317966 539358 FALSE FALSE TRUE 417999.706 385881.9977 411603.0676 429310.3672 382734.1313 382531.2456 380114.4956 351585.2169 381778.8596 404905.9767 1.032337703 0.953016305 1.016539867 1.060271747 0.94524199 0.944740921 0.938772252 0.868313231 0.942882747 1 18.62722741 -5.90344586 7.35108204 0.932270255 1.010942612 0.46747544 0.039087678 0.202276321 13.38022126 0.012269161 0.013941367 1.25E-06 5.90344586 0.078672357 LVNHFVEEFKR ddPTM_HeLa_A486_30min_R1 2 LVNHFVEEFKR 11 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 122.51 0.00054833 17752000 48482 50516 37384 22079.3 54251 54507 62474 59094 43586 63769 FALSE FALSE TRUE 45083.66216 46512.92818 51860.08598 51401.72623 47446.33371 47782.48053 46842.34442 45639.58621 47364.06957 47800.82733 0.943156524 0.973056969 1.084920259 1.075331309 0.992583944 0.999616182 0.979948403 0.954786533 0.990862967 1 15.54474797 -6.311326598 2.266152584 0.979105846 1.020108957 0.116006627 0.041438624 0.654285556 6.599684123 0.018216704 0.016246529 4.88E-07 6.311326598 0.041003111 LVNTTIT(ph)PEPEPKPQPNSR ddPTM_HeLa_A485_30min_R1 3 LVNTTITPEPEPKPQPNSR 19 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 LVNT(0.051)T(0.125)IT(0.824)PEPEPKPQPNSR;LVNT(0.001)T(0.004)IT(0.995)PEPEPKPQPNSR;LVNTTIT(1)PEPEPKPQPNSR ;; 200.23 2.06E-25 2252680000 1069140 1138280 885130 1110030 1498170 1278120 1570560 1919930 1085550 1610210 TRUE FALSE FALSE 1306966.505 1271391.944 1212576.42 1170668.128 1349006.934 1345040.387 1234997.026 1449064.157 1303409.928 1208814.281 1.081197108 1.051767806 1.003112256 0.968443331 1.115975345 1.112693991 1.021659857 1.198748377 1.078254905 1 20.20516118 -5.78254076 24.99984767 1.095754992 1.02631723 0.206168018 0.058151694 341.3330199 404391.9439 0.017871617 0.020283561 1.65E-06 5.78254076 -0.069437762 LVNTTIT(ph)PEPEPKPQPNSR ddPTM_HeLa_A486_30min_R1 1 LVNTTITPEPEPKPQPNSR 19 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 LVNT(0.019)T(0.057)IT(0.923)PEPEPKPQPNSR 137.43 1.67E-06 1014700000 654370 662090 429960 304440 703910 606280 760340 779810 429830 719300 TRUE FALSE FALSE 608502.0422 609623.5771 596452.0267 708751.7055 615619.0441 531483.3378 570094.8899 602264.2861 467088.0105 539182.5981 1.128563949 1.130644014 1.106215276 1.314492916 1.141763563 0.985720495 1.057331768 1.116995037 0.866289105 1 19.04041441 -6.181830551 5.422922521 1.016063242 1.169504479 0.495850796 0.080024741 0.210579857 10.72049446 0.027012476 0.026943061 6.58E-07 6.181830551 0.153441237 LVPLLDTGDIIIDGGNSEYRDTTR ddPTM_HeLa_A485_30min_R1 1 LVPLLDTGDIIIDGGNSEYRDTTR 24 1 P52209-2;P52209;K7EMN2;K7EM49 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 62.19 0.024505 12788000 8098.3 7872.5 9101.4 5779.4 9872.2 9144.6 9179.7 8285.3 8974.6 8107.5 FALSE FALSE TRUE 9899.738896 8793.120393 12468.3866 6095.113988 8889.289105 9623.397116 7218.382104 6253.317184 10775.7199 6086.449457 1.626521171 1.444704413 2.04854845 1.001423577 1.460504875 1.581118382 1.185975856 1.027416268 1.770444325 1 12.57138516 -1.000000485 0.064809482 0.550538105 3.317945926 0.205745519 0.302086707 462.1704506 2.230645583 17.97396714 118.5497967 0.099999888 1.000000485 2.767407821 LVPRPGSGSSSGSSNSGSQPGSHPGS(ph)QSGSGER ddPTM_HeLa_A486_30min_R1 1 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 LVPRPGSGSSSGSSNSGSQPGS(0.001)HPGS(0.518)QS(0.393)GS(0.087)GER 130.16 1.51E-06 448000000 11742 16502 20241 0 16240 10586 11161 11500 20237 5127 TRUE FALSE FALSE 10918.94644 15194.32142 28078.85727 0 14203.02777 9280.006951 8368.399751 8881.701043 21991.15945 3843.165829 2.841133306 3.953595056 7.306178948 0 3.695658319 2.414677733 2.177475582 2.311037681 5.722146905 1 11.90807951 -5.263388388 24.99981963 2.565076678 4.625631552 0.247944878 1.770118318 262.6392776 3368873.598 0.482081104 0.757617598 5.45E-06 5.263388388 2.060554874 LVPRPGSGSSSGSSNSGSQPGSHPGSQS(ph)GSGER ddPTM_HeLa_A486_30min_R1 3 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 LVPRPGSGSSSGSSNSGSQPGS(0.001)HPGS(0.115)QS(0.485)GS(0.399)GER;LVPRPGSGSSSGSSNSGSQPGS(0.001)HPGS(0.115)QS(0.591)GS(0.293)GER;LVPRPGSGSSSGSSNSGSQPGSHPGS(0.108)QS(0.499)GS(0.393)GER ;; 176.12 2.72E-15 853880000 94313 112075 110410 4776.08 128362 68877 83603 69649 112899 35142 TRUE FALSE FALSE 87702.14573 103193.7688 153163.7089 11118.95561 112261.641 60379.65603 62684.64514 53791.44313 122685.1762 26342.21446 3.329338384 3.91742953 5.814382428 0.422096465 4.261663012 2.292125292 2.379627014 2.042024341 4.65736001 1 14.68508901 -5.248630947 24.96667622 2.547505255 4.310087832 0.297286303 1.34275197 1017.213814 1982787.885 0.347522662 0.596996982 5.64E-06 5.248630947 1.762582577 LVPRPGSGSSSGSSNSGSQPGSHPGSQS(ph)GSGERFR ddPTM_HeLa_A485_30min_R1 1 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFR 35 2 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 LVPRPGSGSSSGSSNSGSQPGSHPGS(0.127)QS(0.508)GS(0.365)GERFR 149.18 7.49E-10 150980000 14840 21409 19177 21750 29038 19871 32360 34296 20411 33314 TRUE FALSE FALSE 18141.1068 23912.59632 26271.37032 22938.14743 26146.87476 20911.41483 25446.02164 25884.85223 24507.30048 25009.4329 0.725370578 0.956143085 1.050458458 0.91717983 1.045480514 0.836141104 1.017456963 1.035003566 0.979922279 1 14.61018472 -4.27029831 4.338058098 0.983184089 0.708352685 0.608118719 0.062134845 0.128115174 5.776534828 0.015104562 0.107234864 5.37E-05 4.27029831 -0.274831404 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGS(ph)GER ddPTM_HeLa_A485_30min_R1 4 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 LVPRPGSGSSSGSSNSGSQPGS(0.011)HPGS(0.077)QS(0.275)GS(0.638)GER;LVPRPGSGSSSGSSNSGSQPGS(0.002)HPGS(0.028)QS(0.115)GS(0.854)GER;LVPRPGSGSSSGSSNSGSQPGSHPGS(0.003)QS(0.133)GS(0.865)GER;LVPRPGSGSSSGSSNSGSQPGSHPGSQS(0.067)GS(0.932)GER ;;; 211.77 6.41E-30 1693960000 184456 323677 305323 64469.4 285993 209425 215073 214425 242099 176835 TRUE FALSE FALSE 225487.6008 361528.2095 418274.6833 67991.20008 257518.5327 220390.1692 169120.8966 161836.9325 290686.0486 132753.2889 1.698546248 2.723308873 3.150767011 0.512162076 1.939827893 1.660148468 1.273948826 1.2190804 2.189671164 1 17.01838808 -5.251178845 24.98771145 1.436563404 2.544117491 0.460199484 0.557172277 632.287743 1539821.83 0.148146919 0.252989272 5.61E-06 5.251178845 1.107554086 LVPS(ph)QEETK ddPTM_HeLa_A485_30min_R1 1 LVPSQEETK 9 0 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 LVPS(1)QEETK 81.625 0.0071179 309380000 149620 130890 114900 133360 106560 172840 153590 157520 163150 128770 TRUE FALSE FALSE 182902.4528 146196.4469 157406.2914 140645.1191 95950.51225 181889.6351 120774.2418 118887.973 195892.7085 96670.00884 1.892028924 1.51232475 1.628284649 1.454899206 0.992557189 1.881551862 1.249345513 1.229833062 2.026406234 1 16.56078075 -2.788942402 0.866885559 1.42081115 7.090670178 0.161348515 0.322032577 46.83385236 3.487085836 0.104955511 439.8340544 0.001625764 2.788942402 5.669859028 LVPS(ph)QEETKLSVEESEAAGDGVDTK ddPTM_HeLa_A485_30min_R1 2 LVPSQEETKLSVEESEAAGDGVDTK 25 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 LVPS(0.984)QEET(0.016)KLSVEESEAAGDGVDTK;LVPS(1)QEETKLSVEESEAAGDGVDTK ; 249.22 5.82E-50 1220150000 532590 377340 297610 1024620 744260 768660 1219430 1131260 531760 1518440 TRUE FALSE FALSE 651062.8081 421466.6306 407708.3236 1080592.396 670158.8611 808905.849 958888.8187 853816.7113 638479.3544 1139920.853 0.57114738 0.36973324 0.357663712 0.947953881 0.587899466 0.709615801 0.841188944 0.749014029 0.560108496 1 20.12050223 -5.247307028 24.9957003 0.753127507 0.426536601 0.540449388 0.142129312 614.199665 1086325.082 0.037150016 0.063948501 5.66E-06 5.247307028 -0.326590906 LVPS(ph)QEETKLSVEESEAAGDGVDTK ddPTM_HeLa_A486_30min_R1 3 LVPSQEETKLSVEESEAAGDGVDTK 25 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 LVPS(0.999)QEET(0.001)KLSVEESEAAGDGVDTK;LVPS(0.547)QEET(0.425)KLS(0.026)VEES(0.002)EAAGDGVDTK;LVPS(1)QEETKLSVEESEAAGDGVDTK ;; 250.72 3.10E-50 1665070000 768840 718350 307351 551120 743030 936900 1310760 1242690 531370 1407040 TRUE FALSE FALSE 714948.2863 661425.3298 426365.5383 1283035.212 649832.2489 821314.8037 982793.9842 959756.6147 577429.5794 1054708.026 0.677863701 0.627116997 0.404249828 1.216483786 0.616125253 0.778712955 0.931816162 0.909973748 0.547478132 1 20.00841224 -5.227294742 24.99993338 0.843266794 0.575480899 0.322298295 0.190228085 786.9372299 576176.8312 0.049838288 0.086316352 5.93E-06 5.227294742 -0.267785895 LVPSDKFS(ph)PR ddPTM_HeLa_A485_30min_R1 4 LVPSDKFSPR 10 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LVPSDKFS(1)PR;LVPSDKFS(1)PR;LVPS(0.001)DKFS(0.999)PR;LVPS(0.008)DKFS(0.992)PR ;;; 93.649 0.0013042 1344870000 2485830 2438290 1907490 3022410 3165840 2709790 3433400 3796170 2219880 3931730 TRUE FALSE FALSE 3038794.307 2723426.805 2613149.928 3187516.605 2850637.854 2851670.414 2699826.042 2865153.355 2665389.554 2951622.069 1.029533672 0.922688183 0.885326735 1.079920305 0.965786875 0.966136703 0.914692321 0.97070468 0.903025351 1 21.49307658 -8.869527024 9.671262689 0.999999995 0.959373538 0.043960095 0.056275667 15728475.82 3606149.484 0.053966173 0.013491543 1.35E-09 8.869527024 -0.040626457 LVPSDKFS(ph)PR ddPTM_HeLa_A486_30min_R1 4 LVPSDKFSPR 10 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LVPSDKFS(1)PR;LVPSDKFS(1)PR;LVPS(0.001)DKFS(0.999)PR;LVPS(0.001)DKFS(0.999)PR ;;; 136.24 2.00E-05 1401840000 3045850 3012580 2005740 1438630 3173380 3255050 3911770 3902830 2367550 4410550 TRUE FALSE FALSE 2832351.644 2773852.189 2782416.244 3349203.344 2775345.09 2853475.026 2933003.772 3014240.807 2572771.14 3306119.572 0.856699699 0.839005405 0.841595769 1.013031523 0.839456961 0.863088876 0.887143888 0.911715605 0.778184541 1 21.65670747 LVPSQEETKLSVEES(ph)EAAGDGVDTK ddPTM_HeLa_A486_30min_R1 1 LVPSQEETKLSVEESEAAGDGVDTK 25 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 LVPS(0.237)QEET(0.237)KLS(0.217)VEES(0.31)EAAGDGVDTK 40.669 0.035797 333220000 37271 33720 16318 33873 32795 52876 66749 63731 25942 83647 TRUE FALSE FALSE 34658.49537 31047.90439 22636.76661 78858.05585 28681.5453 46352.69672 50047.6942 49220.84254 28190.67345 62701.24675 0.55275608 0.495172042 0.361025782 1.257679232 0.457431818 0.73926276 0.798192967 0.785005803 0.449603077 1 15.93620651 LVPTGPTHREPS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 LVPTGPTHREPSPVR 15 1 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LVPTGPTHREPS(1)PVR 145.88 4.64E-08 198240000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LVPTGPTHREPS(ph)PVRYDNLSR ddPTM_HeLa_A485_30min_R1 4 LVPTGPTHREPSPVRYDNLSR 21 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LVPTGPTHREPS(1)PVRYDNLSR;LVPTGPTHREPS(1)PVRYDNLSR;LVPTGPTHREPS(1)PVRYDNLSR;LVPT(0.001)GPT(0.002)HREPS(0.998)PVRYDNLSR ;;; 243.97 7.22E-47 6265800000 629200 902150 574089 631490 625168 904520 980790 1231170 722330 1163670 TRUE FALSE FALSE 769163.3693 1007648.595 786468.4109 665986.6997 562924.0788 951879.2685 771236.2042 929223.6271 867295.0054 873588.4848 0.88046418 1.153459109 0.900273326 0.762357462 0.644381295 1.089619752 0.882836962 1.063685755 0.992795831 1 19.73659431 LVPTGPTHREPS(ph)PVRYDNLSR ddPTM_HeLa_A486_30min_R1 4 LVPTGPTHREPSPVRYDNLSR 21 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 LVPTGPT(0.002)HREPS(0.998)PVRYDNLSR;LVPTGPTHREPS(1)PVRYDNLSR;LVPT(0.001)GPTHREPS(0.998)PVRYDNLSR;LVPT(0.001)GPT(0.014)HREPS(0.985)PVRYDNLSR ;;; 240.79 9.92E-47 4507200000 688296 704860 799449 222117 1226850 734981 722248 804187 726063 972326 TRUE FALSE FALSE 640050.0048 649004.3265 1109017.063 517099.6012 1072967.033 644306.517 541533.9112 621091.1754 788998.7254 728849.2408 0.878165153 0.890450714 1.52160008 0.70947402 1.472138507 0.884005197 0.742998525 0.852153149 1.082526648 1 19.4752609 LVPVGYGIK(ac)K ddPTM_HeLa_A485_30min_R1 2 LVPVGYGIKK 10 1 P24534 P24534 EEF1B2 Elongation factor 1-beta 0 1 ; LVPVGYGIK(1)K;LVPVGYGIK(1)K 183.24 8.11E-09 174425000 313530 347670 329900 309550 455340 385290 487550 550790 369360 429720 FALSE TRUE FALSE 383273.6668 388326.9822 451943.7383 326459.9327 410004.7508 405463.1886 383380.9596 415707.8889 443487.164 322598.7124 1.188081825 1.203746225 1.400947124 1.011969112 1.270943544 1.25686549 1.188414413 1.288622282 1.374733212 1 18.29938115 -4.538927929 24.95769391 1.233299764 1.191997653 0.004346622 0.125931768 1201.062327 1867739.375 0.030578568 0.080948501 2.89E-05 4.538927929 -0.041302111 LVPVGYGIK(ac)K ddPTM_HeLa_A486_30min_R1 2 LVPVGYGIKK 10 1 P24534 P24534 EEF1B2 Elongation factor 1-beta 0 1 ; LVPVGYGIK(1)K;LVPVGYGIK(1)K 196.25 1.13E-13 178806000 414380 477060 383520 151948 521100 443610 519460 522890 387050 473760 FALSE TRUE FALSE 385334.1019 439256.0282 532029.215 353742.623 455738.7789 388881.9085 389485.6137 403839.3616 420599.8056 355127.4123 1.085058738 1.236896992 1.498136152 0.996100585 1.283310618 1.095048974 1.096748942 1.137167528 1.184363108 1 18.4379772 -5.290806583 24.99591656 1.12460399 1.269717472 0.260757107 0.122456792 999.690863 850885.4011 0.033990223 0.050422549 5.12E-06 5.290806583 0.145113482 LVPVGYGIR ddPTM_HeLa_A485_30min_R1 1 LVPVGYGIR 9 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQZ1;P29692-4;H0YE72;H0YE58;E9PQC9 P29692-2 EEF1D Elongation factor 1-delta 0 0 99.919 0.017877 16745000 9217.9 10386 11439 8905.3 16029 12834 13448 13824 11976 13860 FALSE FALSE TRUE 11268.39005 11600.55235 15670.76212 9391.77399 14433.09648 13505.96839 10574.72494 10433.64232 14379.47335 10404.95707 1.082982849 1.114906315 1.506086186 0.902624963 1.387136571 1.298032111 1.016316056 1.002756883 1.381982957 1 13.34498339 -13.19880237 0.327931917 1.39E-10 1.193033965 0.076498978 0.188317625 554.6572651 8.056237851 379.9757372 0.159795297 6.33E-14 13.19880237 1.193033965 LVPVS(ph)PLPPK ddPTM_HeLa_A485_30min_R1 2 LVPVSPLPPK 10 0 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase 1 0 LVPVS(1)PLPPK;LVPVS(1)PLPPK ; 125.22 0.00011466 583650000 664900 710540 631980 796300 898940 860170 1048450 1135640 673170 1024200 TRUE FALSE FALSE 812804.7111 793631.4721 865775.7009 839799.8527 809438.3772 905207.1711 824440.0925 857122.5094 808269.0443 768885.789 1.057120216 1.032183822 1.126013399 1.092229645 1.052742018 1.17729731 1.072252998 1.114759203 1.051221203 1 19.55240979 -4.744025548 24.9923667 1.091743879 1.044652 0.102413051 0.046146195 449.0290262 644436.5104 0.01100245 0.028957445 1.80E-05 4.744025548 -0.047091879 LVPVS(ph)PLPPK ddPTM_HeLa_A486_30min_R1 2 LVPVSPLPPK 10 0 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase 1 0 LVPVS(1)PLPPK;LVPVS(1)PLPPK ; 113.63 0.00057518 566820000 924280 1007810 663300 401730 1028060 1011030 1129850 1159170 755890 1183950 TRUE FALSE FALSE 859492.745 927947.4652 920147.5238 935247.7423 899111.1285 886299.398 847149.5797 895252.2955 821411.1538 887481.2138 0.96846303 1.045596741 1.036807889 1.05382258 1.013104407 0.998668348 0.954554943 1.008756334 0.925553286 1 19.75935706 -6.377516393 2.436940718 0.973073996 1.02813691 0.37812862 0.030724832 0.29989662 3.48558052 0.011826279 0.01013606 4.19E-07 6.377516393 0.055062914 LVQAAQMLQS(ph)DPYSVPAR ddPTM_HeLa_A485_30min_R1 2 LVQAAQMLQSDPYSVPAR 18 0 P18206;P18206-2;P18206-3 P18206 VCL Vinculin 1 0 LVQAAQMLQS(1)DPYSVPAR;LVQAAQMLQS(1)DPYSVPAR ; 186.11 6.89E-18 45945000 93650 107576 101470 88764 149170 103210 142871 144944 114921 119434 TRUE FALSE FALSE 114482.1194 120156.0774 139007.9755 93612.95256 134318.111 108613.916 112345.4437 109396.2567 137984.5906 89661.30182 1.276828655 1.340110783 1.55036758 1.044073091 1.498061129 1.211380092 1.252998132 1.220105603 1.538953682 1 16.45219783 -10.80930338 2.847684023 0.908062305 1.32105096 0.286684655 0.154040511 104231568.6 104233729.5 67041622.14 0.03705447 1.55E-11 10.80930338 0.412988656 LVQAAQMLQS(ph)DPYSVPAR ddPTM_HeLa_A486_30min_R1 2 LVQAAQMLQSDPYSVPAR 18 0 P18206;P18206-2;P18206-3 P18206 VCL Vinculin 1 0 LVQAAQMLQS(0.996)DPYS(0.004)VPAR;LVQAAQMLQS(1)DPYSVPAR ; 132.13 7.12E-06 75778000 92948 122105 108775 46070 149806 111008 132227 144979 103277 108978 TRUE FALSE FALSE 86432.82518 112428.9551 150895.5931 107253.2882 131015.9346 97312.96161 99142.40605 111970.4466 112229.1335 81689.19947 1.058069191 1.376301345 1.847191478 1.312943314 1.603834233 1.191258603 1.213653784 1.370688503 1.373855225 1 16.31785772 -6.278819152 24.67569356 1.252044407 1.4517475 0.189456 0.213788941 1317.546754 1870638.549 0.076354566 0.067499464 5.26E-07 6.278819152 0.199703092 LVQAFQFTDK ddPTM_HeLa_A485_30min_R1 4 LVQAFQFTDK 10 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 254.83 4.08E-35 426844000 506394 533406 434002 591311 652220 618506 773160 708200 498912 755080 FALSE FALSE TRUE 619039.5983 595783.1917 594557.4001 623612.8227 587282.6867 650890.0178 607968.0499 534512.8396 599039.0621 566852.4522 1.09206478 1.051037513 1.048875061 1.10013253 1.036041539 1.148252981 1.072533157 0.9429488 1.056781284 1 19.11261373 -7.139580742 8.51707172 1.000120649 1.078499938 0.45662701 0.039290499 0.265770604 17.28128294 0.017802963 0.010261181 7.25E-08 7.139580742 0.078379289 LVQAFQFTDK ddPTM_HeLa_A486_30min_R1 4 LVQAFQFTDK 10 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 237.44 1.40E-26 535801000 535154 612851 422947 254396 766196 624565 684811 676105 528258 665034 FALSE FALSE TRUE 497642.4681 564286.4548 586723.4053 592246.7445 670092.5532 547512.5204 513464.0446 522170.6508 574047.8288 498505.1578 0.998269447 1.131957104 1.176965566 1.18804537 1.344203852 1.098308637 1.030007487 1.047472915 1.151538394 1 18.92724891 -6.510405507 24.7116761 1.061631795 1.172890226 0.267788512 0.086512905 747.5228968 1480980.641 0.03291244 0.02762123 3.09E-07 6.510405507 0.111258431 LVQAFQYTDK ddPTM_HeLa_A485_30min_R1 2 LVQAFQYTDK 10 0 H7C3T4;Q13162 H7C3T4 PRDX4 Peroxiredoxin-4 0 0 ; ; 172.23 9.20E-06 307260000 184205 172798 149103 210550 214360 216930 270230 268230 174382 278550 FALSE FALSE TRUE 225180.7668 193005.223 204262.4044 222051.8134 193017.5657 228288.1194 212493.1529 202446.1719 209378.8679 209112.6113 1.076839724 0.922972659 0.976805766 1.061876718 0.923031684 1.091699434 1.01616613 0.968120338 1.001273269 1 17.67392055 LVQAFQYTDK ddPTM_HeLa_A486_30min_R1 2 LVQAFQYTDK 10 0 H7C3T4;Q13162 H7C3T4 PRDX4 Peroxiredoxin-4 0 0 ; ; 179.51 7.39E-08 310000000 325290 370020 247050 142468 379830 363160 437270 408310 310780 437930 FALSE FALSE TRUE 302488.8508 340698.2676 342714.3762 331672.7039 332188.1796 318357.0115 327860.421 315346.7263 337718.6606 328269.4776 0.921465051 1.037861546 1.044003173 1.010367173 1.011937455 0.969803875 0.9987539 0.960633711 1.028784836 1 18.32452109 -6.214383614 24.59616524 0.989582257 1.009396401 0.026536076 0.035645349 1047.090025 547316.7755 0.011594424 0.011594401 6.10E-07 6.214383614 0.019814144 LVQLLVK ddPTM_HeLa_A485_30min_R1 1 LVQLLVK 7 0 P14923 P14923 JUP Junction plakoglobin 0 0 129.29 0.0073486 0 16724 19393 14593 16786 18969 21319 21590 23064 15979 26345 FALSE FALSE TRUE 20444.1961 21660.84265 19991.55797 17702.97668 17080.37976 22435.22987 16977.12013 17407.51784 19185.83873 19777.67634 1.03370061 1.095216762 1.010814295 0.895098917 0.863619136 1.134371373 0.858398117 0.88015991 0.970075473 1 14.27158532 -5.027524023 5.017065529 0.939631579 1.063091425 0.280074944 0.078960176 0.227802673 15.47509857 0.021569033 0.041114997 9.39E-06 5.027524023 0.123459846 LVRDPLS(ph)PAVR ddPTM_HeLa_A486_30min_R1 1 LVRDPLSPAVR 11 1 E9PN39;Q6P444 E9PN39 MTFR2 Mitochondrial fission regulator 2 1 0 LVRDPLS(1)PAVR 74.678 0.0019724 0 21655 27454 26497 10896 35562 22327 26707 27056 22320 22936 TRUE FALSE FALSE 20137.09633 25278.44505 36757.34801 25366.43865 31101.48236 19572.52174 20024.62612 20895.93943 24254.71557 17192.67631 1.171260132 1.470303087 2.137965454 1.475421173 1.808995981 1.138422046 1.164718381 1.215397711 1.410758577 1 14.06950652 -6.271797486 24.77130198 1.198000367 1.626418179 0.415455421 0.252742226 660.0169556 1578418.79 0.090535398 0.080706905 5.35E-07 6.271797486 0.428417812 LVREDENDAS(ph)DDEDDDEKRR ddPTM_HeLa_A485_30min_R1 2 LVREDENDASDDEDDDEKRR 20 3 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 LVREDENDAS(1)DDEDDDEKRR;LVREDENDAS(1)DDEDDDEKRR ; 213.39 4.03E-27 3633100000 1038500 1044980 850490 1744190 1718410 1401570 2080770 2538890 1201120 2344870 TRUE FALSE FALSE 1269510.742 1167181.321 1165121.643 1839470.683 1547319.067 1474954.038 1636196.491 1916223.247 1442173.767 1760337.063 0.721174807 0.663044223 0.661874176 1.044953675 0.878990222 0.837881602 0.92947909 1.088554736 0.819260014 1 20.74742027 -5.249011144 24.71300195 0.938844319 0.680132353 0.677492488 0.082393193 384.9575283 765469.4619 0.022362786 0.03837846 5.64E-06 5.249011144 -0.258711966 LVREDENDAS(ph)DDEDDDEKRR ddPTM_HeLa_A486_30min_R1 2 LVREDENDASDDEDDDEKRR 20 3 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 LVREDENDAS(1)DDEDDDEKRR;LVREDENDAS(1)DDEDDDEKRR ; 256.75 1.27E-58 1892260000 652780 670720 477320 600950 919460 760910 1208670 1172900 583460 1258120 TRUE FALSE FALSE 607023.493 617569.7045 662151.0871 1399041.97 804132.7532 667036.6606 906247.982 905856.2742 634034.7826 943078.563 0.643661638 0.654844388 0.702116571 1.483484012 0.852667831 0.707297024 0.960946434 0.960531084 0.67230325 1 19.84701843 -5.029097797 24.99923332 0.945335837 0.65655955 0.279367957 0.208094244 893.3786398 767541.981 0.057786169 0.100326323 9.35E-06 5.029097797 -0.288776287 LVRLS(ph)SDSFAR ddPTM_HeLa_A485_30min_R1 1 LVRLSSDSFAR 11 1 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LVRLS(0.715)S(0.266)DS(0.019)FAR 172.3 1.28E-08 847920000 153290 192010 129560 154690 157210 177390 198370 209200 180490 268550 TRUE FALSE FALSE 187388.8317 214463.8992 177489.6354 163140.323 141557.6204 186677.8661 155986.629 157893.372 216712.6874 201605.4273 0.929483071 1.063780386 0.880381237 0.809206008 0.702151833 0.925956551 0.77372237 0.783180166 1.074934789 1 17.62117495 -4.902366339 6.257825259 0.849361069 0.995088369 0.164830818 0.110426777 0.296265236 15.94277969 0.028209082 0.059919183 1.25E-05 4.902366339 0.1457273 LVRLSS(ph)DSFAR ddPTM_HeLa_A485_30min_R1 3 LVRLSSDSFAR 11 1 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LVRLS(0.26)S(0.735)DS(0.005)FAR;LVRLS(0.257)S(0.729)DS(0.013)FAR;LVRLS(0.259)S(0.741)DSFAR ;; 207.64 3.01E-15 2295590000 862300 1063330 924860 936300 1073770 1052230 1194490 1356060 975620 1549050 TRUE FALSE FALSE 1054115.66 1187677.194 1267004.201 987447.6982 966861.6886 1107323.136 939277.4534 1023484.159 1171417.985 1162900.343 0.906453994 1.021306082 1.089520876 0.849124952 0.831422653 0.952208108 0.807702448 0.880113386 1.007324481 1 20.14929604 -5.273338769 24.99638146 0.893963944 1.007314898 0.265647969 0.076267934 864.469597 1815940.771 0.021336494 0.031939041 5.33E-06 5.273338769 0.113350953 LVRLSS(ph)DSFAR ddPTM_HeLa_A486_30min_R1 2 LVRLSSDSFAR 11 1 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LVRLS(0.212)S(0.788)DSFAR;LVRLS(0.038)S(0.958)DS(0.004)FAR ; 241.76 3.63E-22 749460000 563870 680000 758220 212110 984160 686670 723780 678920 729630 757970 TRUE FALSE FALSE 524345.6248 626114.3235 1051823.09 493802.7994 860717.4759 601955.6369 542682.5886 524344.7367 792874.9159 568169.3784 0.922868505 1.101985336 1.851249169 0.869111955 1.514895925 1.059465117 0.955142268 0.922866942 1.395490405 1 19.11596155 -6.459978928 24.99590581 1.054139231 1.258852166 0.090659809 0.291953209 528.4924789 210018.5258 0.101143309 0.089199918 3.47E-07 6.459978928 0.204712936 LVS(ph)LIGSK ddPTM_HeLa_A486_30min_R1 1 LVSLIGSK 8 0 F5GX11;P25786;P25786-2 F5GX11 PSMA1 Proteasome subunit alpha type-1 1 0 LVS(1)LIGSK 76.843 0.011583 23616000 39815 47312 33395 26531 55866 56342 64085 59983 36925 55406 TRUE FALSE FALSE 37024.1741 43562.82481 46326.43835 61765.5088 48858.76535 49391.09688 48050.25518 46326.18032 40125.68873 41531.97697 0.891461876 1.048898415 1.11544024 1.487179598 1.176413186 1.189230576 1.156946013 1.115434027 0.966139627 1 15.34193493 -7.649019479 3.615582588 0.981929498 1.160952313 0.182236975 0.139884102 0.419642044 10.02529187 0.122449767 0.039364707 2.24E-08 7.649019479 0.179022815 LVS(ph)LY(ph)FTKDEALPWAMR ddPTM_HeLa_A485_30min_R1 1 LVSLYFTKDEALPWAMR 17 1 Q6P093 Q6P093 AADACL2 Arylacetamide deacetylase-like 2 2 0 LVS(1)LY(1)FTKDEALPWAMR 70.335 0.0040319 729000000 1415900 1563600 1216600 638760 2202200 948450 772120 867990 710980 479500 TRUE FALSE FALSE 1730862.07 1746449.418 1666670.967 673653.8414 1982941.236 998109.3754 607150.2544 655114.0915 853667.1645 359969.4745 4.80835791 4.851659771 4.630034169 1.871419354 5.508637192 2.772761153 1.686671502 1.819915681 2.371498766 1 18.45751505 -6.136218334 0.369327991 0.983421074 5.529846582 0.605548562 0.979287733 1.25439413 0.338134068 1.097467451 2.209575842 7.31E-07 6.136218334 4.546425508 LVS(ph)LY(ph)FTKDEALPWAMR ddPTM_HeLa_A486_30min_R1 1 LVSLYFTKDEALPWAMR 17 1 Q6P093 Q6P093 AADACL2 Arylacetamide deacetylase-like 2 2 0 LVS(1)LY(1)FTKDEALPWAMR 59.512 0.013852 689490000 727720 624100 560680 16994 862210 361680 307450 338440 351040 113520 TRUE FALSE FALSE 676710.5859 574644.0431 777790.3115 39562.89083 754063.582 317059.5989 230522.7581 261384.6001 381468.4298 85093.85311 7.952520202 6.753061732 9.140381862 0.464932417 8.861551739 3.725998851 2.709041249 3.071721288 4.482914052 1 16.3767673 -1 0.138922508 0.241405773 28.42683412 0.410702336 2.314855295 74.53578202 0.692397396 9.888410132 416.5819064 0.1 1 28.18542835 LVS(ph)PEPPPKGFLVMGSK ddPTM_HeLa_A486_30min_R1 2 LVSPEPPPKGFLVMGSK 17 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 LVS(1)PEPPPKGFLVMGSK;LVS(1)PEPPPKGFLVMGSK ; 80.303 0.001702 216490000 371840 393580 228120 175521 480080 387810 452550 448150 312980 480530 TRUE FALSE FALSE 345775.9362 362391.2874 316454.1733 408621.7583 419863.8898 339965.9452 339317.2034 346116.028 340109.3584 360202.1603 0.959949646 1.006077496 0.878546017 1.134423397 1.165634014 0.94381984 0.942018791 0.960893815 0.944217986 1 18.45844731 LVS(ph)PETEASEESLQFNLEKPATGER ddPTM_HeLa_A485_30min_R1 2 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LVS(1)PETEASEESLQFNLEKPATGER;LVS(0.989)PET(0.011)EASEESLQFNLEKPATGER ; 218.55 2.50E-38 411010000 107839 90982 107165 144946 161009 111194 146588 144753 115697 207851 TRUE FALSE FALSE 131827.4135 101621.5535 146809.793 152864.033 144978.3786 117015.9459 115268.2763 109252.0998 138916.3267 156037.5709 0.844844051 0.651263365 0.94086182 0.979661706 0.929124811 0.749921607 0.738721294 0.700165346 0.89027486 1 17.25153392 -8.00747934 24.43388524 1.000000017 0.818240207 0.232288988 0.10339717 355.2178831 1160448.618 0.109297504 0.028220494 9.83E-09 8.00747934 -0.181759809 LVS(ph)PETEASEESLQFNLEKPATGER ddPTM_HeLa_A486_30min_R1 3 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LVS(0.846)PET(0.154)EASEESLQFNLEKPATGER;LVS(0.784)PET(0.216)EASEESLQFNLEKPATGER;LVS(0.763)PET(0.237)EASEESLQFNLEKPATGER ;; 206.03 7.32E-29 751430000 225486 260699 182213 102288 290122 260218 299169 301293 241733 291478 TRUE FALSE FALSE 209680.5958 240040.2618 252770.7534 238131.6333 253732.1935 228114.9489 224313.7519 232695.1611 262686.6111 218490.0116 0.959680464 1.098632656 1.156898439 1.089897115 1.161298824 1.04405207 1.026654492 1.065015098 1.202282014 1 17.7372078 -11.03409259 2.415885472 0.891374074 1.089873006 0.135210361 0.067801716 21499185.15 7646485.546 12927295.11 0.016959747 9.25E-12 11.03409259 0.198498931 LVS(ph)PGSANETSSILVESVTR ddPTM_HeLa_A485_30min_R1 2 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 LVS(0.999)PGS(0.001)ANETSSILVESVTR;LVS(0.991)PGS(0.009)ANETSSILVESVTR ; 285.96 5.54E-73 771230000 158447 141047 192011 138305 237880 166113 165121 168153 168089 198298 TRUE FALSE FALSE 193692.9885 157541.2197 263043.8591 145860.2519 214195.832 174810.4198 129841.5494 126913.2131 201822.9205 148865.958 1.301123448 1.058275658 1.766984626 0.979809312 1.438850324 1.17428069 0.872204439 0.852533479 1.355735879 1 17.18365436 -6.53770543 7.614842526 1.009151471 1.302864702 0.247581233 0.236983207 0.21646812 68.07359421 0.086258592 0.068135075 2.90E-07 6.53770543 0.29371323 LVS(ph)PGSANETSSILVESVTR ddPTM_HeLa_A486_30min_R1 4 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 LVS(0.857)PGS(0.143)ANETSSILVESVTR;LVS(0.999)PGS(0.001)ANETSSILVESVTR;LVS(1)PGSANETSSILVESVTR;LVS(0.932)PGS(0.068)ANETSSILVESVTR ;;; 268.25 2.50E-59 1297790000 373313 433163 413285 149545 516201 417105 409777 442007 395813 359109 TRUE FALSE FALSE 347145.6865 398837.5863 573320.0202 348148.3176 451454.2572 365646.8259 307246.4604 341371.655 430122.3895 269185.769 1.289613815 1.481644397 2.129830348 1.293338496 1.677110417 1.358343821 1.141391915 1.268163827 1.59786452 1 18.03824262 -6.418482061 4.850810779 1.270970643 1.583097423 0.253615751 0.261928242 0.343303463 12.68107764 0.094916573 0.082501412 3.82E-07 6.418482061 0.31212678 LVSEK(ac)LASYQAAR ddPTM_HeLa_A485_30min_R1 2 LVSEKLASYQAAR 13 1 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 0 1 ; LVSEK(1)LASYQAAR;LVSEK(1)LASYQAAR 294.49 1.13E-62 340410000 13245.9 28307 38550 44017 100169 160235 324240 468730 413370 523610 FALSE TRUE FALSE 16192.40476 31617.25741 52811.2492 46421.53725 90195.82265 168624.6568 254963.4752 353773.2326 496329.5673 393083.6633 0.041193278 0.080433914 0.134351168 0.118095819 0.229457062 0.428979051 0.648623942 0.899994748 1.262656309 1 18.58447688 -6.876687031 1.014885426 1.139977527 0.088825513 0.962478709 0.081162167 0.090970003 0.179770287 0.061322647 0.031653245 1.33E-07 6.876687031 -1.051152014 down LVSEK(ac)LASYQAAR ddPTM_HeLa_A486_30min_R1 2 LVSEKLASYQAAR 13 1 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 0 1 ; LVSEK(1)LASYQAAR;LVSEK(1)LASYQAAR 331.57 7.73E-92 855270000 314470 388810 406800 141009 569120 431950 493600 538030 433930 458290 FALSE TRUE FALSE 292427.2769 357999.2796 564323.8545 328276.0782 497735.6628 378660.4007 370096.0592 415532.3141 471543.4018 343531.201 0.851239352 1.042115763 1.642714993 0.955593196 1.448880513 1.102259124 1.077328808 1.20959119 1.372636315 1 18.39008161 -4.527618636 24.99968912 1.230183201 0.898958294 0.255975852 0.202266662 136.3151728 718973.4824 0.048553596 0.129504791 2.97E-05 4.527618636 -0.331224907 LVSFHDDS(ph)DEDLLHI ddPTM_HeLa_A485_30min_R1 28 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 0 LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVS(0.014)FHDDS(0.986)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI ;;;;;;;;;;;;;;;;;;;;;;;;;;; 328.73 2.11E-90 12380169700 2325073.9 3538875.6 3222112.7 1574249.1 3147384.4 2829569 3449132.5 3591236.18 2834580.1 3544470 TRUE FALSE FALSE 2842278.568 3952716.317 4414106.271 1660246.342 2834019.758 2977720.857 2712197.165 2710479.876 3403454.326 2660898.86 1.068164826 1.485481608 1.658877884 0.623941919 1.065061059 1.11906578 1.019278562 1.018633183 1.27906189 1 21.34348224 -5.2467845 24.99977392 1.024881888 1.412305432 0.426246101 0.205212209 784.3209221 1337971.968 0.055701724 0.095943639 5.67E-06 5.2467845 0.387423543 LVSFHDDS(ph)DEDLLHI ddPTM_HeLa_A486_30min_R1 17 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 0 LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVS(0.001)FHDDS(0.999)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVS(0.038)FHDDS(0.962)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI ;;;;;;;;;;;;;;;; 341.29 4.79E-91 14292639700 1756624.7 1909877.7 1992220 146390 2412407.7 1577122.8 1607153.5 1507185.6 2003414.8 1216253.6 TRUE FALSE FALSE 1633494.38 1758532.035 2763660.938 340803.3181 2109821.031 1382553.424 1205026.696 1164032.341 2177072.408 911695.7821 1.791709923 1.928858365 3.031341147 0.373812542 2.314172197 1.516463552 1.321742098 1.276777148 2.387937348 1 19.79819298 -5.245192128 24.99617586 1.500077815 2.218458486 0.247682454 0.63073708 1268.153325 1951033.922 0.164388269 0.283640111 5.69E-06 5.245192128 0.718380672 LVSGWVKPIIIGR ddPTM_HeLa_A485_30min_R1 1 LVSGWVKPIIIGR 13 1 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 164.13 2.25E-06 0 50719 59313 56984 49628 63019 54300 71346 77854 42386 64055 FALSE FALSE TRUE 62001.26657 66249.1394 78064.7529 52339.05198 56744.60709 57143.06404 56102.34426 58760.18443 50892.48141 48087.26734 1.289348927 1.377685676 1.623397569 1.088418096 1.18003393 1.188320052 1.166677737 1.221948921 1.058335901 1 15.55336732 -5.79439176 0.342604475 1.027862353 1.496478852 0.46925358 0.123998306 2.371225988 0.473037905 0.148454513 0.424968645 1.61E-06 5.79439176 0.468616499 LVSGWVKPIIIGR ddPTM_HeLa_A486_30min_R1 1 LVSGWVKPIIIGR 13 1 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 125.61 0.002732 0 34890 34459 27559 10769 38657 34623 36143 35222 31216 41948 FALSE FALSE TRUE 32444.39117 31728.34334 38230.58286 25070.77624 33808.2786 30351.56628 27099.63912 27202.71949 33921.82801 31443.94776 1.031816724 1.009044525 1.215832794 0.797316432 1.075191921 0.965259404 0.861839592 0.865117818 1.07880309 1 14.94049474 -5.258669788 24.99989786 0.945749732 1.077912653 0.281420544 0.099622637 328.651237 2966570.323 0.02694818 0.044074963 5.51E-06 5.258669788 0.132162922 LVSNDNEFDS(ph)DEDEHS(ph)DSGNDLALEDHEDDDEEELLKR ddPTM_HeLa_A486_30min_R1 1 LVSNDNEFDSDEDEHSDSGNDLALEDHEDDDEEELLKR 38 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 2 0 LVSNDNEFDS(1)DEDEHS(0.999)DS(0.001)GNDLALEDHEDDDEEELLKR 195.92 3.41E-22 443780000 128670 103430 74711 71949 146330 108380 162870 155580 114580 155630 TRUE FALSE FALSE 119650.8975 95233.83011 103641.1 167500.9081 127975.9269 95009.17753 122118.2033 120157.8303 124511.8867 116659.235 1.025644454 0.816341973 0.888408877 1.435813531 1.097006396 0.814416257 1.046794138 1.02998987 1.06731273 1 16.83194099 LVSPETEAS(ph)EESLQFNLEKPATGER ddPTM_HeLa_A485_30min_R1 4 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LVSPET(0.013)EAS(0.983)EES(0.004)LQFNLEKPATGER;LVSPETEAS(0.999)EES(0.001)LQFNLEKPATGER;LVSPET(0.001)EAS(0.999)EESLQFNLEKPATGER;LVSPETEAS(1)EESLQFNLEKPATGER ;;; 229.82 6.69E-39 1185020000 206862 222146 247580 324842 361330 267426 369906 323850 295322 418715 TRUE FALSE FALSE 252877.7382 248124.0423 339170.1447 342587.2959 325354.7165 281428.0118 290872.5612 244425.2797 354590.4165 314337.0564 0.804479565 0.789356639 1.079001466 1.089872444 1.035050465 0.895306507 0.925352437 0.777589771 1.128057954 1 18.26195283 -4.743306689 24.93694146 0.982638024 0.796917919 0.379019861 0.099019283 269.5785119 370731.2318 0.026595609 0.070058908 1.81E-05 4.743306689 -0.185720105 LVSPETEAS(ph)EESLQFNLEKPATGER ddPTM_HeLa_A486_30min_R1 2 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LVSPETEAS(1)EESLQFNLEKPATGER;LVS(0.004)PET(0.032)EAS(0.798)EES(0.166)LQFNLEKPATGER ; 212.28 2.46E-29 1004000000 127951 123980 81389 39911 142378 152480 137376 174507 116995 154532 TRUE FALSE FALSE 118982.2956 114155.3733 112905.0005 92914.82499 124519.6236 133668.5679 103003.0718 134775.5656 127136.2208 115836.1814 1.027160031 0.985489783 0.974695463 0.802122652 1.074963126 1.153944876 0.889213289 1.163501455 1.097551899 1 16.82172642 LVSPGS(ph)ANETSSILVESVTR ddPTM_HeLa_A485_30min_R1 2 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 LVSPGS(1)ANETSSILVESVTR;LVSPGS(1)ANETSSILVESVTR ; 180.63 6.96E-19 273070000 47118 68582 59698 62241 93281 63610 77477 83812 67339 81290 TRUE FALSE FALSE 57599.23654 76602.06832 81782.77444 65641.06823 83993.61611 66940.52124 60923.40602 63256.97559 80853.31963 61025.89903 0.943849045 1.25523867 1.340132235 1.075626402 1.376360159 1.09691987 0.9983205 1.036559503 1.324901737 1 15.89713402 -6.482059543 24.98391571 1.086510221 1.205894859 0.118771597 0.144823277 1031.493761 631339.6762 0.050104875 0.044182435 3.30E-07 6.482059543 0.119384639 LVSVQEDAGKS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 LVSVQEDAGKSPAR 14 1 E9PDH4;Q9Y2I7-2;Q9Y2I7-3;Q9Y2I7-4;Q9Y2I7 E9PDH4;Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 0 LVSVQEDAGKS(1)PAR;LVSVQEDAGKS(1)PAR ; 114.4 9.50E-05 450420000 366830 416740 210060 144961 358630 365460 460960 419860 292910 497430 TRUE FALSE FALSE 341117.1113 383716.0047 291400.8576 337476.5339 313647.2813 320373.2609 345622.9325 324267.0435 318299.6746 372870.2903 0.91484122 1.029087097 0.78150731 0.905077564 0.841169944 0.859208334 0.926925372 0.869651061 0.853647188 1 18.50831432 -3.86639574 0.002515689 1.773991893 9.79E-06 0.019333233 0.069907422 1300472.669 456.3176004 157606.404 164225.6137 0.00013602 3.86639574 -1.773982105 LVTIS(ph)PNNKPK ddPTM_HeLa_A486_30min_R1 1 LVTISPNNKPK 11 1 H0YDE6;Q6IQ26-2;Q6IQ26 H0YDE6 DENND5A DENN domain-containing protein 5A 1 0 LVT(0.001)IS(0.999)PNNKPK 105.14 0.00036313 284750000 314190 321840 149500 169180 303280 383280 458710 443800 232650 486350 TRUE FALSE FALSE 292166.9035 296336.2263 207390.4037 393859.5899 265239.7944 335994.8105 343935.9063 342756.4281 252816.2893 364564.7944 0.80141283 0.812849268 0.568871177 1.080355525 0.72755186 0.921632631 0.94341503 0.940179725 0.693474228 1 18.47581572 -5.257199186 24.99997617 0.893858591 0.736224926 0.284113804 0.125443164 509.0850132 3001528.716 0.033096444 0.054801722 5.53E-06 5.257199186 -0.157633666 LVTSGAESGNLNTS(ph)PSSNQTR ddPTM_HeLa_A485_30min_R1 3 LVTSGAESGNLNTSPSSNQTR 21 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 0 LVTSGAESGNLNT(0.05)S(0.948)PS(0.001)SNQTR;LVTSGAESGNLNT(0.132)S(0.867)PS(0.001)SNQTR;LVTSGAESGNLNTS(0.999)PS(0.001)SNQTR ;; 303.64 1.82E-87 1879910000 725769 1056540 1069303 818084 1202730 1023788 1121890 1317390 972766 1096750 TRUE FALSE FALSE 887213.8102 1180093.162 1464882.677 862773.8574 1082981.978 1077391.957 882189.0365 994298.0369 1167991.213 823350.4092 1.077565275 1.433281807 1.779172829 1.047881738 1.315335447 1.308546088 1.071462438 1.207624392 1.418583389 1 19.65114703 -5.304856324 24.99998394 1.208802902 1.430335522 0.222085306 0.199951758 717.3191432 413039.297 0.056335209 0.08355935 4.96E-06 5.304856324 0.22153262 LVTSGAESGNLNTS(ph)PSSNQTR ddPTM_HeLa_A486_30min_R1 2 LVTSGAESGNLNTSPSSNQTR 21 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 0 LVTSGAESGNLNT(0.004)S(0.996)PSSNQTR;LVTSGAESGNLNT(0.048)S(0.949)PS(0.003)SNQTR ; 420.74 3.84E-194 2224500000 956160 1176070 1031380 337540 1274060 973850 1122780 1162890 933350 1024500 TRUE FALSE FALSE 889138.1216 1082873.93 1430757.957 785810.1783 1114255.515 853706.2884 841848.5684 898125.3327 1014253.529 767958.5316 1.157794445 1.410068233 1.863066687 1.023245587 1.450931878 1.111656754 1.096216181 1.169497174 1.320713929 1 19.55066888 -5.300836993 24.99999271 1.181045281 1.470286465 0.323493918 0.204382585 639.3880029 405726.2157 0.057301791 0.084993684 5.00E-06 5.300836993 0.289241184 LVVHLY(ph)HLCQMFPES(ph)AS(ph)DAIK ddPTM_HeLa_A486_30min_R1 1 LVVHLYHLCQMFPESASDAIK 21 0 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 3 0 LVVHLY(1)HLCQMFPES(1)AS(1)DAIK 40.669 0.026081 181000000 212900 305190 425780 9812.8 523710 181780 133320 208870 308720 36797 TRUE FALSE FALSE 197976.8094 281005.6329 590653.4188 22844.69431 458021.4084 159353.8318 99961.92588 161314.8606 335480.0982 27582.79169 7.17754793 10.18771544 21.41383749 0.828222704 16.60533181 5.777291638 3.624068477 5.848387734 12.16265931 1 14.75148086 -6.382065047 23.17569138 5.856501219 11.17335846 0.190965991 5.715569703 17.69875321 3338.869386 1.950510685 1.720187789 4.15E-07 6.382065047 5.316857246 LVVLGIRPIR ddPTM_HeLa_A485_30min_R1 1 LVVLGIRPIR 10 1 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 0 107.47 0.010036 0 7181.6 8209.2 10271 8242.6 10227 8828.8 9402.2 10448 7348.3 9043 FALSE FALSE TRUE 8779.122144 9169.194529 14070.67031 8692.872367 9208.763971 9291.062316 7393.343161 7885.611618 8823.036407 6788.746524 1.2931875 1.350646176 2.072646292 1.280482683 1.356474857 1.368597617 1.089058655 1.161571078 1.299656185 1 12.7289295 -6.184512574 1.243672834 1.154342004 1.531956686 0.333623536 0.224170248 0.558244912 1.773727647 0.11049191 0.106542909 6.54E-07 6.184512574 0.377614682 LVVLGIRPIR ddPTM_HeLa_A486_30min_R1 1 LVVLGIRPIR 10 1 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 0 122.13 0.0048448 0 15676 18971 19852 6968.1 21342 17762 20515 19403 14641 19938 FALSE FALSE TRUE 14577.19335 17467.66887 27539.22605 16222.08895 18665.08735 15570.70503 15381.93001 14985.36046 15910.09367 14945.39503 0.975363537 1.168765954 1.842656284 1.0854239 1.248885514 1.041839644 1.029208662 1.002674097 1.06454822 1 13.86741341 -6.097000201 1.767731837 1.022028542 1.304926308 0.229458982 0.215411586 0.54253398 3.382997315 0.088084766 0.090542515 8.00E-07 6.097000201 0.282897766 LVVVLCNLKPQK ddPTM_HeLa_A485_30min_R1 1 LVVVLCNLKPQK 12 1 P54577 P54577 YARS "Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed" 0 0 150.04 7.97E-05 50398000 44754 51854 40350 45215 69988 54101 63662 72094 36191 62454 FALSE FALSE TRUE 54709.3729 57917.87423 55277.1441 47684.98096 63019.74898 56933.6447 50060.09363 54412.83346 43454.20174 46885.36718 1.166875215 1.235308108 1.178984989 1.017054655 1.344124036 1.214315854 1.067712522 1.160550439 0.926817989 1 15.51685011 -7.535357261 1.544560491 0.967607498 1.185927859 0.447493168 0.089056313 0.373215072 1.588048212 0.080012544 0.026152958 2.92E-08 7.535357261 0.218320361 LVVVLCNLKPQK ddPTM_HeLa_A486_30min_R1 2 LVVVLCNLKPQK 12 1 P54577 P54577 YARS "Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed" 0 0 ; ; 215.89 7.54E-21 98297000 307450 297860 169630 108790 277220 271980 360270 330840 234560 361260 FALSE FALSE TRUE 285899.3427 274256.4888 235315.2788 253268.6179 242448.4826 238425.8729 270126.6355 255514.9542 254891.8497 270798.1446 1.055765515 1.01277093 0.868969317 0.935267183 0.895310723 0.88045608 0.997520259 0.943562426 0.941261433 1 18.04685833 -4.584747141 6.409062264 0.930145083 1.045653801 0.498590152 0.041602141 0.137437829 10.62581026 0.010659699 0.029163104 2.60E-05 4.584747141 0.115508717 LVYLYLMNYAK ddPTM_HeLa_A485_30min_R1 2 LVYLYLMNYAK 11 0 K7ERB2;C9J1E7;A0A087WYD1;A0A087WU93;A0A087WZQ6;A0A087X253;P63010-3;Q10567-4;P63010;Q10567-3;Q10567-2;Q10567;P63010-2;K7EJX1;K7EN71 K7ERB2 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 0 ; ; 255.54 1.23E-35 49580000 73955 85213 72369 71247 101454 76025 106155 105205 52640 108481 FALSE FALSE TRUE 90406.03461 95177.9191 99141.30463 75139.0432 91352.88353 80005.55144 83474.11704 79403.30879 63204.36516 81438.68314 1.110111695 1.168706509 1.217373621 0.922645607 1.121738221 0.982402322 1.024993453 0.975007278 0.776097583 1 16.31342661 -6.034954672 0.589781671 0.913719183 1.170894759 0.469811203 0.089590383 0.806177 0.610854736 0.069528512 0.100546225 9.23E-07 6.034954672 0.257175576 LVYLYLMNYAK ddPTM_HeLa_A486_30min_R1 2 LVYLYLMNYAK 11 0 K7ERB2;C9J1E7;A0A087WYD1;A0A087WU93;A0A087WZQ6;A0A087X253;P63010-3;Q10567-4;P63010;Q10567-3;Q10567-2;Q10567;P63010-2;K7EJX1;K7EN71 K7ERB2 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 0 ; ; 238.31 4.22E-27 34767000 52553 63502 46568 39169 72491 59626 82160 74367 56445 79775 FALSE FALSE TRUE 48869.30608 58469.87025 64600.37673 91187.41149 63398.50283 52269.95035 61602.699 57435.25752 61337.69805 59798.82075 0.817228592 0.977776309 1.080295162 1.524903173 1.06019654 0.874096674 1.030165783 0.960474752 1.025734242 1 15.86782941 -6.007058995 24.9926903 0.977574879 1.11523626 0.100649718 0.171271666 786.7572282 2785561.3 0.058559308 0.063887105 9.84E-07 6.007058995 0.137661381 LWAPDS(ph)PNR ddPTM_HeLa_A485_30min_R1 2 LWAPDSPNR 9 0 E5RIM3;Q9Y263 E5RIM3 PLAA Phospholipase A-2-activating protein 1 0 LWAPDS(1)PNR;LWAPDS(1)PNR ; 118.28 0.00095492 0 257240 379100 430090 221375 437470 343080 329780 357230 369200 316190 TRUE FALSE FALSE 314462.1505 423432.4473 589198.1885 233468.1557 393913.9507 361043.1383 259319.8089 269618.7824 443295.0535 237369.652 1.324778243 1.7838525 2.482196791 0.983563626 1.659495843 1.52101642 1.092472465 1.135860377 1.867530452 1 17.85677597 -5.281605059 24.98784563 1.3411943 1.855633675 0.298297235 0.379283693 1024.321715 1269262.726 0.106478762 0.158150002 5.23E-06 5.281605059 0.514439375 LWAPDS(ph)PNR ddPTM_HeLa_A486_30min_R1 2 LWAPDSPNR 9 0 E5RIM3;Q9Y263 E5RIM3 PLAA Phospholipase A-2-activating protein 1 0 LWAPDS(1)PNR;LWAPDS(1)PNR ; 158.08 2.50E-05 230708000 384210 481830 459120 120079 552300 402000 455460 434460 383970 374660 TRUE FALSE FALSE 357278.8631 443648.036 636903.5597 279549.9805 483025.384 352405.3272 341499.0906 335542.9422 417252.8288 280842.6974 1.272167183 1.579702945 2.267830232 0.995397007 1.719914345 1.254813924 1.215979955 1.194771825 1.48571721 1 18.09940276 -6.077288251 1.15119565 1.229235274 1.624969529 0.193269769 0.327830399 0.805449982 2.23838914 0.155796401 0.166846234 8.37E-07 6.077288251 0.395734255 LWAQDGSEDEPPKDS(ph)DGEDPETAAVGCR ddPTM_HeLa_A486_30min_R1 2 LWAQDGSEDEPPKDSDGEDPETAAVGCR 28 1 H7C3J6;A0A087WXB3;A0A087X223;H7BY14;A0A087WYU3;A0A087X1J5;A0A087WYW1;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1-4;Q96NU1;Q96NU1-5 H7C3J6 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 LWAQDGSEDEPPKDS(1)DGEDPETAAVGCR;LWAQDGSEDEPPKDS(1)DGEDPETAAVGCR ; 200.66 1.04E-28 915520000 897070 1036240 526320 800180 983410 1296020 1625170 1474240 810950 2144750 TRUE FALSE FALSE 834190.0255 954124.5685 730125.1993 1862859.479 860061.5479 1136130.229 1218535.277 1138587.734 881243.7989 1607690.64 0.518874717 0.593475228 0.454145332 1.158717624 0.534967068 0.706684608 0.757941389 0.708213201 0.548142644 1 20.61655839 -11.68139164 2.082796208 9.605640516 0.672283233 0.219563322 0.189215707 6495382.278 179675.8499 266476623.1 0.047862931 2.08E-12 11.68139164 -8.933357283 LWES(ph)MER ddPTM_HeLa_A486_30min_R1 1 LWESMER 7 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 LWES(1)MER 88.948 0.0070598 32979000 1198.4 1290.6 736.66 0 1347.5 1253.1 1727.1 2985.4 1124.2 1789.3 TRUE FALSE FALSE 1114.398349 1188.328156 1021.91448 0 1178.483985 1098.505263 1294.961313 2305.689591 1221.646561 1341.247634 0.830866963 0.885987141 0.761913352 0 0.878647578 0.819017484 0.965490101 1.719063306 0.910828493 1 10.38935991 -6.794629809 2.33366272 1.245022274 0.665891922 0.343901753 0.315912226 0.31648831 3.520102892 0.155863418 0.100129551 1.60E-07 6.794629809 -0.579130352 LWFVNPIFIEDCSSALPTDQPPLGNCPAR ddPTM_HeLa_A486_30min_R1 1 LWFVNPIFIEDCSSALPTDQPPLGNCPAR 29 0 A0A087WWY9;Q8TB24-4;Q8TB24 A0A087WWY9 RIN3 Ras and Rab interactor 3 0 0 39.783 0.037507 51024000 17669 26742 20250 17985 37325 34872 40574 41801 27479 32320 FALSE FALSE TRUE 16430.49434 24622.86653 28091.34231 41869.98891 32643.35046 30569.84719 30421.95605 32283.82481 29860.90185 24226.86163 0.678193263 1.016345695 1.159512228 1.728246504 1.347403182 1.261816229 1.255711801 1.332563223 1.232553448 1 14.56431991 -4.531304407 2.045998622 1.321931135 0.661291508 0.551899881 0.17378257 0.310564475 2.096799249 0.047898113 0.311287693 2.94E-05 4.531304407 -0.660639627 LWK(ac)EEEDGQWKEEQKLEAHSDWVR ddPTM_HeLa_A486_30min_R1 1 LWKEEEDGQWKEEQKLEAHSDWVR 24 3 A8MXL6;P55735-2;P55735;P55735-4;P55735-3 A8MXL6 SEC13 Protein SEC13 homolog 0 1 LWK(0.999)EEEDGQWK(0.001)EEQKLEAHSDWVR 85.376 0.00013618 22839000 11939 18844 13913 16528 32769 29292 35993 36758 16975 21511 FALSE TRUE FALSE 11102.13775 17350.73281 19300.4862 38478.01928 28658.80646 25678.25086 26987.1707 28389.00582 18446.40667 16124.50559 0.688525778 1.076047431 1.196966077 2.386306921 1.777344819 1.592498494 1.673674306 1.760612483 1.143998281 1 13.9769673 -5.015804286 17.32251288 1.668874866 0.945824009 0.395058721 0.36698722 11.55555192 12669.51344 0.097348446 0.17729169 9.64E-06 5.015804286 -0.723050857 LWQGHHATESEHSLSPADLGSPAS(ph)PK ddPTM_HeLa_A485_30min_R1 3 LWQGHHATESEHSLSPADLGSPASPK 26 0 B8ZZS2;Q13506-2;Q13506 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 LWQGHHATESEHSLSPADLGS(0.099)PAS(0.901)PK;LWQGHHATESEHSLSPADLGSPAS(1)PK;LWQGHHATESEHSLSPADLGS(0.001)PAS(0.999)PK ;; 142.01 5.04E-09 1646460000 224459 303343 252372 188690 386483 241232 451540 379000 259786 415620 TRUE FALSE FALSE 274389.1302 338816.3251 345734.9049 198997.6569 348003.3955 253862.5345 355064.7903 286049.6558 311922.6673 312013.5829 0.879414055 1.085902485 1.108076455 0.637785237 1.115346942 0.813626548 1.137978632 0.916785907 0.999708616 1 18.25124931 LWQGHHATESEHSLSPADLGSPAS(ph)PK ddPTM_HeLa_A486_30min_R1 3 LWQGHHATESEHSLSPADLGSPASPK 26 0 B8ZZS2;Q13506-2;Q13506 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 LWQGHHATESEHSLSPADLGSPAS(1)PK;LWQGHHATESEHSLSPADLGSPAS(1)PK;LWQGHHATESEHSLSPADLGS(0.326)PAS(0.674)PK ;; 167.48 5.67E-14 2006020000 598040 566779 399692 102146 624200 532815 718890 615160 513315 509591 TRUE FALSE FALSE 556120.4843 521865.3679 554463.4465 237801.0502 545907.0156 467081.7026 539016.1184 475101.4968 557809.5575 381986.0967 1.455865774 1.36618943 1.451527821 0.622538496 1.429127972 1.222771474 1.411088317 1.243766464 1.460287592 1 18.5431606 -11.28900935 1.879135838 6.94E-05 1.286367675 0.119412506 0.239810692 2413661.282 335135.7709 10221561.37 0.0616911 5.14E-12 11.28900935 1.286298251 LWSLGQDDMAIPSKPPAAS(ph)PEKPSALLGNSLALPR ddPTM_HeLa_A485_30min_R1 1 LWSLGQDDMAIPSKPPAASPEKPSALLGNSLALPR 35 2 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 LWSLGQDDMAIPS(0.001)KPPAAS(0.998)PEKPSALLGNSLALPR 99.846 4.68E-05 221620000 86124 64453 43495 120140 84236 97983 148800 136270 65000 171130 TRUE FALSE FALSE 105281.9867 71990.21768 59585.61048 126702.944 75849.16807 103113.2384 117007.6644 102849.5688 78044.90378 128470.4404 0.819503586 0.560364061 0.463807941 0.986241999 0.590401713 0.802622284 0.910774993 0.800569909 0.607493082 1 16.97107692 -5.253861859 24.99909026 0.799945036 0.609139096 0.258253313 0.153531413 844.2018538 2785109.421 0.040991932 0.069259923 5.57E-06 5.253861859 -0.19080594 LWSNFWGALSPDGYYAR ddPTM_HeLa_A485_30min_R1 2 LWSNFWGALSPDGYYAR 17 0 E7ETU9;O00469-3;O00469;O00469-2 E7ETU9 PLOD2 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2" 0 0 ; ; 212.17 2.41E-24 17930100 7133.5 9791.9 9374 5265.6 12945 9889.5 11837.4 13558.4 9066.8 8130.4 FALSE FALSE TRUE 8720.322465 10936.97753 12841.83268 5553.246395 11656.15035 10407.29893 9308.242787 10233.18114 10886.42359 6103.640909 1.428708306 1.791877617 2.10396268 0.909825214 1.909704473 1.705096857 1.525031195 1.676569984 1.783595031 1 12.57545437 -10.24076145 5.434129474 0.999951292 1.65074065 0.289585403 0.304585138 0.000173245 2.42E-05 0.284254251 0.068936649 5.74E-11 10.24076145 0.650789357 LWSNFWGALSPDGYYAR ddPTM_HeLa_A486_30min_R1 2 LWSNFWGALSPDGYYAR 17 0 E7ETU9;O00469-3;O00469;O00469-2 E7ETU9 PLOD2 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2" 0 0 ; ; 150.11 1.79E-08 13615700 3654.99 4103.5 3732.44 1555.56 4817.81 2997.05 4314.6 4371.09 4216.82 4301.9 FALSE FALSE TRUE 3398.794075 3778.323715 5177.740726 3621.422294 4213.515346 2627.304443 3235.041445 3375.888227 4582.337353 3224.676239 1.053995447 1.171690872 1.605662194 1.123034384 1.306647562 0.814749838 1.00321434 1.046892146 1.421022457 1 11.6549386 -6.193544343 24.99994783 1.056729731 1.260193444 0.196262061 0.197005645 304.4907092 112117.3321 0.06637823 0.066378225 6.40E-07 6.193544343 0.203463714 LWSNSHRPELVRPALER ddPTM_HeLa_A485_30min_R1 4 LWSNSHRPELVRPALER 17 2 P52895;B4DK69;S4R3P0;P52895-2 P52895 AKR1C2 Aldo-keto reductase family 1 member C2 0 0 ;;; ;;; 170.11 3.20E-12 4879015000 57298.5 88932.3 79946.9 60034.3 76822.7 88234.8 84112.3 105915.9 70863.9 80390.1 FALSE FALSE TRUE 70044.35365 99332.15888 109522.5852 63313.82179 69173.96225 92854.63769 66141.01997 79939.85946 85085.63473 60350.32754 1.160629221 1.645925763 1.814780294 1.049104858 1.146206907 1.538593765 1.095951301 1.324596944 1.409862021 1 15.88107398 -13.1572078 0.078621685 1.28E-10 1.733110465 0.169041343 0.239185647 390.8771843 2.565618578 74.33215136 9.736919896 6.96E-14 13.1572078 1.733110465 LWSNSHRPELVRPALER ddPTM_HeLa_A486_30min_R1 3 LWSNSHRPELVRPALER 17 2 P52895;B4DK69;S4R3P0;P52895-2 P52895 AKR1C2 Aldo-keto reductase family 1 member C2 0 0 ;; ;; 217.88 3.77E-34 3203174000 72675.3 72192.1 71226.9 29321.9 86384.1 52240.2 77504.2 69678.8 58882.1 67259.9 FALSE FALSE TRUE 67581.13677 66471.33508 98807.8632 68262.86505 75549.00068 45795.33526 58111.8294 53814.45832 63986.04784 50417.58325 1.34042793 1.318415735 1.959789756 1.353949568 1.498465333 0.908320715 1.152610372 1.067374809 1.269121678 1 15.62163934 -6.244066075 23.86842336 1.088266759 1.50251674 0.537872505 0.192044239 369.9151309 508209.939 0.063995325 0.063821533 5.70E-07 6.244066075 0.414249982 LWSTFHRPELVRPALENSLK ddPTM_HeLa_A486_30min_R1 2 LWSTFHRPELVRPALENSLK 20 2 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ; ; 71.742 0.0035893 165761000 170639 190502 144151 21016.1 287212 172578 188638 168159 186562 160258 FALSE FALSE TRUE 158678.0873 175405.9277 199970.1277 48926.54289 251187.1928 151287.081 141438.7772 129872.8666 202733.3444 120128.3537 1.320904536 1.460154263 1.664637211 0.407285552 2.090990054 1.259378626 1.177397116 1.08111751 1.687639413 1 16.87421718 -10.94023218 2.742745517 0.766345412 1.340866858 0.058098639 0.42128348 71743393.87 20688801.31 106454624.2 0.102453191 1.15E-11 10.94023218 0.574521446 LWSTFHRPELVRPALENSLKK ddPTM_HeLa_A485_30min_R1 3 LWSTFHRPELVRPALENSLKK 21 3 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ;; ;; 143.57 7.78E-10 210358700 168309 187965 134463 123335.7 230013 244788 340018 402259 163863 241541 FALSE FALSE TRUE 205748.7564 209945.8717 184206.4592 130073.217 207112.0981 257604.7212 267370.3766 303604.3495 196748.8011 181329.2739 1.134669278 1.157815653 1.015867186 0.717331593 1.142187875 1.420646074 1.474501997 1.674326174 1.085036061 1 17.46825233 -6.105689478 4.480466419 1.379680087 1.008950977 0.327639019 0.213090786 0.238575898 7.881256207 0.071707148 0.072480459 7.84E-07 6.105689478 -0.37072911 LWSTFHRPELVRPALENSLKK ddPTM_HeLa_A486_30min_R1 2 LWSTFHRPELVRPALENSLKK 21 3 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ; ; 147.16 6.07E-10 188514000 191017 164321 141715 24719.1 278825 206215 249059 221086 168860 209404 FALSE FALSE TRUE 177627.6947 151299.6055 196590.8433 57547.31403 243852.1686 180774.2899 186741.8039 170749.5441 183496.9208 156967.8754 1.131618137 0.963888981 1.252427242 0.366618417 1.553516399 1.151664246 1.189681669 1.087799294 1.169009393 1 17.26010981 LWSTYLRPLLVVR ddPTM_HeLa_A485_30min_R1 1 LWSTYLRPLLVVR 13 1 K7EQG1;Q9NXS2-3;Q9NXS2 K7EQG1 QPCTL Glutaminyl-peptide cyclotransferase-like protein 0 0 82.069 0.011474 21181000 16316 17372 12396 15078 18578 13559 23504 22125 8917.9 23596 FALSE FALSE TRUE 19945.43791 19403.50428 16981.79624 15901.67296 16728.30909 14268.92827 18482.17839 16698.80906 10707.64073 17713.95145 1.125973387 1.095379782 0.958667877 0.897692026 0.944357849 0.805519215 1.043368468 0.942692493 0.604474996 1 14.11259845 -4.821651547 1.906492732 0.892281273 1.134494141 0.367383034 0.114104168 0.403993723 2.782551072 0.032396249 0.117567822 1.51E-05 4.821651547 0.242212869 LWTLSANDMEDDS(ph)MDLIDSDELLDPEDLKKPDPASLR ddPTM_HeLa_A485_30min_R1 1 LWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLR 37 2 Q6FI81-3;Q6FI81 Q6FI81-3 CIAPIN1 Anamorsin 1 0 LWTLSANDMEDDS(1)MDLIDSDELLDPEDLKKPDPASLR 239.61 9.97E-52 182950000 31344 20137 18415 45075 33111 30961 56227 50685 23991 65296 TRUE FALSE FALSE 38316.36466 22491.84698 25227.47481 47537.33311 29814.35258 32582.07009 44213.64212 38254.42428 28805.77364 49018.90888 0.781664985 0.458840221 0.514647824 0.969775423 0.608221465 0.664683707 0.90197116 0.780401383 0.587646161 1 15.58105075 -14 0.096980676 1.917982319 0.488516441 0.25387853 0.155561961 272.4053174 1.806054153 51.52381462 2.956993651 1.00E-14 14 -1.429465879 LWTLSANDMEDDSMDLIDS(ph)DELLDPEDLKKPDPASLR ddPTM_HeLa_A485_30min_R1 1 LWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLR 37 2 Q6FI81-3;Q6FI81 Q6FI81-3 CIAPIN1 Anamorsin 1 0 LWTLSANDMEDDS(0.005)MDLIDS(0.995)DELLDPEDLKKPDPASLR 107.29 2.76E-05 207740000 7311 5331.4 4094.9 10214 9595.8 8987.2 13580 15744 7277.8 19562 TRUE FALSE FALSE 8937.306727 5954.860853 5609.773913 10771.96496 8640.408459 9457.755895 10678.52206 11882.75931 8738.387704 14685.55341 0.608578136 0.405491076 0.381992681 0.733507594 0.588361107 0.64401767 0.727144682 0.809146171 0.595032918 1 13.84211001 -8.46817296 0.084107747 1.589888425 5.78E-11 0.616360537 0.10744749 20.28009899 0.774216303 8.411621325 5.697546051 3.40E-09 8.46817296 -1.589888425 LWTLSANDMEDDSMDLIDS(ph)DELLDPEDLKKPDPASLR ddPTM_HeLa_A486_30min_R1 1 LWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLR 37 2 Q6FI81-3;Q6FI81 Q6FI81-3 CIAPIN1 Anamorsin 1 0 LWTLSANDMEDDS(0.014)MDLIDS(0.986)DELLDPEDLKKPDPASLR 254.37 5.78E-65 124680000 45081 40985 19476 31557 36328 56094 72348 67362 37177 77391 TRUE FALSE FALSE 41921.0547 37737.19934 27017.62879 73466.2908 31771.40349 49173.6926 54245.76518 52025.1431 40399.53229 58011.78987 0.722629914 0.650509137 0.465726516 1.26640276 0.547671492 0.847649981 0.935081736 0.89680293 0.6964021 1 15.82405851 -5.173955265 24.99988721 0.866637276 0.616711044 0.303655988 0.186931324 97.65858552 27904.98758 0.048543075 0.084079069 6.70E-06 5.173955265 -0.249926233 LY(ph)DLNMPAYVK ddPTM_HeLa_A486_30min_R1 1 LYDLNMPAYVK 11 0 C9K098;C9JVV5;H7C5C7;C9J869;C9JAB9;P16333-2;P16333 C9K098 NCK1 Cytoplasmic protein NCK1 1 0 LY(1)DLNMPAYVK 57.598 0.029218 50347000 59872 60380 32859 21714 46136 54372 56530 58587 50501 57643 TRUE FALSE FALSE 55675.28198 55595.2689 45582.88479 50551.28936 40349.19268 47664.13545 42385.59609 45248.01905 54878.46734 43208.81761 1.288516675 1.286664898 1.054944044 1.169929939 0.933818487 1.103111311 0.980947835 1.047194104 1.270075655 1 15.39903813 -4.759155616 24.98227248 1.068395195 1.287590883 0.476328955 0.091245545 46.4810099 508427.5465 0.022948364 0.055010384 1.74E-05 4.759155616 0.219195687 LYADS(ph)DS(ph)GDDSDKR ddPTM_HeLa_A485_30min_R1 2 LYADSDSGDDSDKR 14 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 2 0 LYADS(1)DS(1)GDDSDKR;LYADS(1)DS(1)GDDSDKR ; 143.67 4.27E-08 1310160000 1932870 1633780 1234200 3107300 2262700 1941800 3054400 2856700 1628460 4091600 TRUE FALSE FALSE 2362830.263 1824836.359 1690781.939 3277043.931 2037417.643 2043469.645 2401802.488 2156089.846 1955276.985 3071639.42 0.769240767 0.594091985 0.550449356 1.066871297 0.663299745 0.665270029 0.781928527 0.701934554 0.63655811 1 21.55057744 -11.43831626 2.254096404 3.771823197 0.715081722 0.28472635 0.13579445 9117935.625 657590.1776 129620267.9 0.034121423 3.64E-12 11.43831626 -3.056741475 LYADS(ph)DS(ph)GDDSDKR ddPTM_HeLa_A486_30min_R1 3 LYADSDSGDDSDKR 14 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 2 0 LYADS(0.998)DS(0.975)GDDS(0.027)DKR;LYADS(0.717)DS(0.857)GDDS(0.426)DKR;LYADS(1)DS(1)GDDSDKR ;; 151.56 2.33E-08 1672740000 3161740 3046450 1798280 2105190 3187730 3742250 4943100 4490080 2573100 5527600 TRUE FALSE FALSE 2940118.353 2805038.207 2494622.176 4900988.71 2787895.179 3280569.243 3706284.097 3467786.802 2796138.38 4143452.981 0.709581686 0.676980822 0.60206359 1.182827157 0.672843445 0.79174767 0.894491651 0.836931617 0.674832897 1 21.98240212 LYAQRPAGFGCQES(ph)RHSYPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_A485_30min_R1 1 LYAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLER 41 2 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LY(0.235)AQRPAGFGCQES(0.259)RHS(0.259)Y(0.235)PPALGS(0.01)PGALAGAGVGAAGPLER 98.139 9.93E-06 433340000 56773 141160 134320 33374 175060 101630 136990 180000 101360 71815 TRUE FALSE FALSE 69401.95799 157667.4341 184010.5575 35197.13711 157630.4117 106951.1897 107720.9674 135854.7178 121702.0223 53912.84216 1.287299189 2.92448752 3.413111796 0.652852562 2.923800813 1.983779474 1.998057663 2.519895304 2.257384649 1 15.71834135 -10.20211599 3.91274106 0.99906104 2.24405859 0.182703989 0.770945442 70076192.38 121765222.2 792618.3721 0.185154279 6.28E-11 10.20211599 1.244997549 LYAQRPAGFGCQES(ph)RHSYPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_A486_30min_R1 3 LYAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLER 41 2 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LYAQRPAGFGCQES(0.5)RHS(0.5)YPPALGSPGALAGAGVGAAGPLER;LY(0.191)AQRPAGFGCQES(0.206)RHS(0.206)Y(0.191)PPALGS(0.206)PGALAGAGVGAAGPLER;LY(0.199)AQRPAGFGCQES(0.256)RHS(0.256)Y(0.235)PPALGS(0.055)PGALAGAGVGAAGPLER ;; 110.21 7.31E-07 1005400000 152208 171591 189886 49201.4 263444 129886 179224 200174 141932 111153 TRUE FALSE FALSE 141539.0052 157993.5042 263414.9445 114543.3457 230400.397 113861.9859 134380.2596 154598.75 154234.78 83319.56532 1.698748723 1.89623534 3.161501666 1.374747279 2.76526163 1.36656961 1.61282958 1.855491557 1.851123196 1 16.34636769 -6.287147138 24.93600129 1.595397674 2.173442802 0.265314293 0.529793558 1140.807611 1106556.144 0.180418919 0.159168932 5.16E-07 6.287147138 0.578045128 LYAQRPAGFGCQESRHS(ph)YPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_A485_30min_R1 1 LYAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLER 41 2 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LYAQRPAGFGCQES(0.062)RHS(0.938)YPPALGSPGALAGAGVGAAGPLER 292.25 5.42E-95 478390000 50624 103510 100760 29401 115550 79187 90090 122070 101540 46117 TRUE FALSE FALSE 61885.13415 115614.5941 138035.317 31007.10218 104045.4363 83333.10887 70841.53553 92132.1411 121918.1466 34620.88062 1.787508955 3.339446947 3.987053896 0.895618529 3.005279889 2.407018752 2.046208365 2.661172664 3.521520667 1 15.0793548 -5.232610366 24.99705303 2.322088423 3.068147232 0.136104336 0.918937057 1579.20878 1369298.292 0.243267881 0.421261975 5.85E-06 5.232610366 0.746058809 LYAQRPAGFGCQESRHS(ph)YPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_A486_30min_R1 1 LYAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLER 41 2 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LYAQRPAGFGCQES(0.252)RHS(0.748)YPPALGSPGALAGAGVGAAGPLER 275.6 9.23E-80 283810000 60033 56759 62356 14648 87717 47644 69140 64592 40472 32970 TRUE FALSE FALSE 55824.99671 52261.21013 86501.91315 34101.28427 76714.71593 41766.16769 51840.44071 49885.81163 43980.14555 24714.0974 2.258832107 2.114631551 3.50010408 1.379831265 3.104087302 1.689973419 2.09760607 2.018516429 1.779557021 1 14.5930466 -8.221849415 0.368656643 0.867071327 2.515701554 0.356034877 0.567417764 2.053350561 0.673937775 1.121017491 0.49955407 6.00E-09 8.221849415 1.648630226 LYATMEK(ac)HK ddPTM_HeLa_A485_30min_R1 2 LYATMEKHK 9 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; LYATMEK(1)HK;LYATMEK(1)HK 123.79 0.00094295 66996000 94385 80128 89637 131926 146298 89769 122695 92989 125530 197605 FALSE TRUE FALSE 115380.6176 89498.27258 122797.4564 139132.7833 131732.0574 94469.16603 96480.21092 70183.30195 150722.7196 148345.7102 0.777781963 0.603308801 0.827778951 0.937895563 0.888007191 0.636817647 0.650374122 0.47310638 1.016023446 1 17.17860368 -7.812970949 24.98496208 1.008014489 0.730979603 0.419918693 0.133162713 125.960172 61068.1261 0.139548979 0.036031532 1.54E-08 7.812970949 -0.277034886 LYATMEK(ac)HK ddPTM_HeLa_A486_30min_R1 2 LYATMEKHK 9 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; LYATMEK(1)HK;LYATMEK(1)HK 147.75 9.82E-05 80503000 119154 141515 98649 46767 162545 158583 165662 162238 135352 170266 FALSE TRUE FALSE 110801.9199 130300.836 136848.5347 108875.9395 142157.0904 139018.6418 124211.6154 125299.949 147084.4203 127630.2854 0.868147553 1.020924114 1.072226191 0.853057244 1.11381942 1.089229264 0.973214273 0.98174151 1.152425695 1 16.96161118 -4.263273777 6.008347903 1.02695046 0.864011595 0.26232601 0.080696155 0.178886882 31.66855364 0.019762112 0.11976075 5.45E-05 4.263273777 -0.162938864 LYCIYVAIGQK ddPTM_HeLa_A485_30min_R1 1 LYCIYVAIGQK 11 0 P25705-2;P25705-3;P25705;K7ENJ4;K7EK77 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 244.6 1.69E-27 37242000 66227 57210 51635 79446 73925 74347 99886 78098 36703 113550 FALSE FALSE TRUE 80958.96767 63900.21184 70736.93521 83785.93381 66564.76743 78239.69396 78544.54011 58944.34305 44068.95544 85244.07473 0.949731321 0.749614704 0.829816447 0.982894519 0.780872661 0.917831465 0.921407621 0.691477305 0.516973826 1 16.37931194 -7.269678322 24.39844181 0.703169151 0.871443692 0.180641047 0.130725154 622.231851 1842635.063 0.066221818 0.03269627 5.37E-08 7.269678322 0.168274542 LYCIYVAIGQK ddPTM_HeLa_A486_30min_R1 2 LYCIYVAIGQK 11 0 P25705-2;P25705-3;P25705;K7ENJ4;K7EK77 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 192.6 5.02E-10 57166000 72374 87641 76385 49113 111617 118073 131416 108185 108074 113752 FALSE FALSE TRUE 67300.95634 80696.00798 105963.3177 114337.546 97616.95507 103506.3537 98534.32682 83553.63716 117441.9413 85267.7588 0.789289613 0.946383593 1.242712593 1.340923552 1.144828437 1.213897905 1.155587155 0.979897189 1.377331162 1 16.37971272 -4.589888115 3.766883632 1.185167547 0.815116361 0.534361344 0.120978586 0.155602715 4.284985698 0.030748006 0.101356909 2.57E-05 4.589888115 -0.370051186 LYDMVLQFLR ddPTM_HeLa_A485_30min_R1 1 LYDMVLQFLR 10 0 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 0 99.802 0.005508 10123000 26873 29484 36511 31721 43465 22881 33571 28916 27893 41086 FALSE FALSE TRUE 32850.80614 32931.89732 50017.93825 33453.83791 39137.47199 24079.01378 26398.2816 21824.30566 33490.86925 30844.01633 1.065062532 1.067691606 1.621641543 1.084613545 1.268883778 0.780670504 0.855863948 0.707570163 1.085814146 1 14.91270302 -6.257180976 24.87786976 0.865824395 1.227645885 0.459789257 0.181163881 299.4259099 1749268.005 0.060646407 0.058595793 5.53E-07 6.257180976 0.36182149 LYDMVLQFLR ddPTM_HeLa_A486_30min_R1 3 LYDMVLQFLR 10 0 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 0 ;; ;; 105.52 0.00062687 7417100 72840 80524 74511 28001.9 78749 75775 83243 79297 73700 74943 FALSE FALSE TRUE 67734.29215 74142.98498 103363.6547 65189.83834 68871.56611 66426.65092 62414.72095 61242.80414 80088.37534 56176.785 1.205734578 1.319815382 1.839970989 1.160440889 1.225979132 1.182457325 1.11104117 1.090179941 1.425648964 1 15.77768644 LYEALT(ph)PVH ddPTM_HeLa_A485_30min_R1 1 LYEALTPVH 9 0 Q9UKF6;G5E9W3 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 1 0 LYEALT(1)PVH 93.111 0.014799 198680000 103820 145710 138890 113920 186890 146630 174710 178600 138670 152920 TRUE FALSE FALSE 126914.4008 162749.517 190271.1907 120143.1611 168282.5754 154307.3201 137381.7813 134798.07 166499.797 114799.8583 1.105527504 1.41768047 1.657416599 1.046544507 1.465877902 1.344142078 1.196706889 1.174200665 1.450348455 1 16.80876134 -12.84195738 0.25043715 2.08E-14 1.351902647 0.209950475 0.180024907 149.3538818 2.516003455 76.59858501 0.26173775 1.44E-13 12.84195738 1.351902647 LYEALT(ph)PVH ddPTM_HeLa_A486_30min_R1 2 LYEALTPVH 9 0 Q9UKF6;G5E9W3 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 1 0 LYEALT(1)PVH;LYEALT(1)PVH ; 111.46 0.0042196 278690000 311580 358710 305560 123279 406430 326020 364350 393700 286200 349660 TRUE FALSE FALSE 289739.851 330284.5132 423881.0152 286999.7422 355451.7596 285798.9671 273185.7763 304063.1044 311008.0464 262102.8601 1.105443302 1.26013319 1.617231552 1.094988975 1.356153685 1.090407663 1.042284606 1.160090753 1.186587763 1 17.99977357 -6.271270585 24.25566641 1.102530465 1.293011435 0.302401368 0.144654469 614.589077 1516316.164 0.050931298 0.045489775 5.35E-07 6.271270585 0.19048097 LYFHSDTCLPLRPQEMEVDS(ph)EDEKDPEWLR ddPTM_HeLa_A485_30min_R1 2 LYFHSDTCLPLRPQEMEVDSEDEKDPEWLR 30 2 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 0 LY(0.001)FHS(0.001)DT(0.015)CLPLRPQEMEVDS(0.983)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR ; 141.01 4.08E-08 1034380000 50951 42363 29947 70829 54995 56199 75389 68420 35464 91127 TRUE FALSE FALSE 62284.87417 47316.98434 41025.6415 74698.20892 49519.5047 59141.49274 59281.52428 51639.88772 42581.2995 68410.71597 0.910454938 0.691660417 0.599696128 1.091908013 0.723855963 0.864506268 0.866553192 0.754850859 0.622436104 1 16.06193471 -11.38258033 2.171609393 2.400410332 0.793258727 0.165524295 0.140226829 7208146.98 544845.9721 49889755.26 0.034717371 4.14E-12 11.38258033 -1.607151605 LYFHSDTCLPLRPQEMEVDS(ph)EDEKDPEWLR ddPTM_HeLa_A486_30min_R1 4 LYFHSDTCLPLRPQEMEVDSEDEKDPEWLR 30 2 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 0 LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR;LYFHSDTCLPLRPQEMEVDS(1)EDEKDPEWLR;LYFHS(0.001)DT(0.002)CLPLRPQEMEVDS(0.998)EDEKDPEWLR ;;; 313.31 2.27E-109 1454905000 397081 485737 307394 334863 500619 562196 736924 672287 434346 732092 TRUE FALSE FALSE 369247.6724 447245.4311 426425.1891 779577.987 437826.6969 492837.9735 552537.8208 519221.926 471995.461 548771.3981 0.672862459 0.814994062 0.777054326 1.420587862 0.797830752 0.898075183 1.006863373 0.946153403 0.860094864 1 19.06584576 -5.040664936 24.99993426 0.985976198 0.756951336 0.308506108 0.161405514 610.7649504 375484.6131 0.043455116 0.075278609 9.11E-06 5.040664936 -0.229024862 LYFSTCPFRQPLARPNTLTLVHVR ddPTM_HeLa_A485_30min_R1 1 LYFSTCPFRQPLARPNTLTLVHVR 24 2 O75694;E9PF10;O75694-2 O75694 NUP155 Nuclear pore complex protein Nup155 0 0 179.03 2.80E-27 43800000 13805 29316 19543 9408.4 23985 22585 30710 44153 12431 11339 FALSE FALSE TRUE 16875.87462 32744.25118 26772.76895 9922.357069 21596.96918 23767.51568 24148.55762 33324.40752 14925.78768 8512.395979 1.982505826 3.846655074 3.145150792 1.16563622 2.537119894 2.792106445 2.836869629 3.914809368 1.753417923 1 13.05534955 LYHRYLMNEEQAVS(ph)K ddPTM_HeLa_A486_30min_R1 1 LYHRYLMNEEQAVSK 15 1 F6UZG9;Q8NFZ0;Q8NFZ0-2 F6UZG9 FBXO18 F-box only protein 18 1 0 LYHRYLMNEEQAVS(1)K 47.09 0.029662 111590000 253390 325340 328320 30006 440360 195410 169170 254380 321440 71887 TRUE FALSE FALSE 235628.6695 299558.8735 455454.2967 69855.48442 385125.9426 171302.301 126841.8767 196463.2271 349302.678 53886.02729 4.372722974 5.559119656 8.452178043 1.296356179 7.147046497 3.178974394 2.35389178 3.645902972 6.482249584 1 15.71762361 -5.854157566 1.052466321 3.530591333 5.688224929 0.136691657 2.219449103 1.110079194 2.637207691 1.012963387 1.392582969 1.40E-06 5.854157566 2.157633596 LYIGLAGLATDVQTVAQR ddPTM_HeLa_A486_30min_R1 1 LYIGLAGLATDVQTVAQR 18 0 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 180.09 3.08E-17 12335000 11774 12764 14345 5702.9 17715 15757 14872 13775 13833 15236 FALSE FALSE TRUE 10948.7034 11752.53415 19899.76817 13276.63941 15493.01951 13813.06155 11150.8683 10638.73321 15032.05558 11420.80643 0.958662899 1.029045911 1.742413576 1.162495791 1.356560906 1.209464641 0.976364355 0.931522066 1.316199138 1 13.4793769 -6.620491078 5.653375461 1.05171032 1.262151761 0.146968125 0.221127451 0.40546351 19.45104531 0.088021501 0.067616284 2.40E-07 6.620491078 0.210441441 LYINHT(ph)PPPLSK ddPTM_HeLa_A485_30min_R1 1 LYINHTPPPLSK 12 0 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H0Y594;B7ZBA0 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 LYINHT(1)PPPLSK 83.106 0.0054933 1485100000 776790 936810 803530 861290 1126500 927290 1080500 1270900 827050 1067300 TRUE FALSE FALSE 949584.2556 1046361.78 1100789.185 908340.0918 1014341.705 975841.4705 849642.3481 959209.7823 993031.3488 801241.7522 1.185140756 1.305925181 1.373853998 1.13366545 1.265962117 1.217911408 1.060406982 1.197154017 1.239365455 1 19.61187808 -14 0.099859681 0.284856014 1.373036215 0.439364414 0.079148753 175.9117616 1.193467172 26.10254747 1.380849621 1.00E-14 14 1.088180201 LYINHT(ph)PPPLSK ddPTM_HeLa_A486_30min_R1 2 LYINHTPPPLSK 12 0 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H0Y594;B7ZBA0 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 LY(0.002)INHT(0.998)PPPLSK;LYINHT(1)PPPLSK ; 128.9 4.18E-05 2983100000 2781000 2789100 2000520 888980 2744000 2429000 2936800 2879200 2031210 2885500 TRUE FALSE FALSE 2586066.261 2568081.558 2775174.92 2069590.367 2399821.933 2129334.676 2201981.578 2223669.012 2207276.918 2162952.019 1.195618876 1.187303988 1.283049691 0.956836004 1.10951233 0.984457657 1.018044579 1.028071355 1.02049278 1 21.04457023 -5.26158848 24.99999932 1.02051375 1.218522169 0.81970732 0.044071107 5.181580481 868851.7549 0.011634006 0.0185966 5.48E-06 5.26158848 0.19800842 LYISNTFNPAKPDAEDS(ph)DGSIASWELR ddPTM_HeLa_A486_30min_R1 1 LYISNTFNPAKPDAEDSDGSIASWELR 27 1 Q6STE5-2;Q6STE5 Q6STE5-2 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 1 0 LYISNTFNPAKPDAEDS(0.994)DGS(0.006)IASWELR 105.98 0.00024962 357500000 220510 271810 177640 115010 285410 268080 332480 323510 240110 375130 TRUE FALSE FALSE 205053.3877 250270.7857 246426.9654 267749.0923 249611.2165 235007.0152 249289.9874 249853.8352 260922.9281 281195.0063 0.729221299 0.890025712 0.876356122 0.952182956 0.887680118 0.835743914 0.886537747 0.888542931 0.927907403 1 18.10121145 -1.000001465 0.024954552 1.537612643 2.97E-13 0.470655174 0.04952562 2105.969711 4.05016375 85.89243383 179.4816256 0.099999663 1.000001465 -1.537612643 LYKEELEQTYHAK ddPTM_HeLa_A485_30min_R1 1 LYKEELEQTYHAK 13 1 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 0 0 120.29 0.00032094 192000000 108650 119200 93730 145410 160530 164310 213960 237340 122230 199630 FALSE FALSE TRUE 132818.8177 133139.4031 128404.6274 153353.3801 144547.0695 172913.0175 168245.6981 179131.9929 146760.4398 149865.9149 0.886251005 0.888390153 0.856796741 1.023270569 0.964509306 1.153784819 1.122641517 1.195281749 0.97927831 1 17.19331277 -5.674677851 1.385541351 1.100525066 0.876682966 0.592134518 0.071249853 0.265014373 1.057376739 0.025983657 0.039595492 2.12E-06 5.674677851 -0.2238421 LYKEELEQTYHAK(ac)LENAR ddPTM_HeLa_A485_30min_R1 2 LYKEELEQTYHAKLENAR 18 2 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 0 1 ; LYKEELEQTYHAK(1)LENAR;LYKEELEQTYHAK(1)LENAR 185.87 7.62E-18 51159000 54694 61593 69068 72219 97892 73250 98086 96492 71851 106562 FALSE TRUE FALSE 66860.49161 68795.76556 94619.12736 76164.1411 88145.52876 77085.25673 77129.12481 72827.18571 86270.83664 79998.05453 0.83577647 0.859967983 1.182767855 0.952074917 1.101845905 0.963589142 0.964137506 0.91036196 1.078411683 1 16.2876773 -4.559936812 24.99959943 1.013143833 0.841824025 0.437685513 0.077627576 127.8681909 86260.24779 0.019222779 0.050858974 2.75E-05 4.559936812 -0.171319808 LYKEELEQTYHAK(ac)LENAR ddPTM_HeLa_A486_30min_R1 1 LYKEELEQTYHAKLENAR 18 2 P20700;A0A0D9SFE5;E9PBF6 P20700 LMNB1 Lamin-B1 0 1 LYKEELEQTYHAK(1)LENAR 189.48 3.92E-18 29103000 19977 18541 14810 7412 22841 19809 21972 23400 15739 25173 FALSE TRUE FALSE 18576.71546 17071.74363 20544.82863 17255.51058 19976.0688 17365.16698 16474.3732 18072.33082 17103.26919 18869.51695 0.984482831 0.904726055 1.088784026 0.914464881 1.058642298 0.92027618 0.873068094 0.957752701 0.906396769 1 14.20376987 LYKS(ph)EPELTTVAEVDESNGEEKSEPVSEIETSVVK ddPTM_HeLa_A485_30min_R1 1 LYKSEPELTTVAEVDESNGEEKSEPVSEIETSVVK 35 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 LYKS(0.994)EPELT(0.002)T(0.003)VAEVDESNGEEKSEPVSEIETSVVK 203.34 1.20E-29 80237000 18825 12957 12039 46609 38823 21576 64722 64613 22127 71264 TRUE FALSE FALSE 23012.5563 14472.20844 16492.72708 49155.13165 34957.6458 22705.686 50893.61597 48766.56044 26567.68594 53499.19632 0.430147701 0.270512633 0.308279904 0.91880131 0.653423756 0.424411721 0.951296832 0.911538187 0.496599721 1 15.7072296 -4.723969804 0.359010014 0.869502144 1.80E-19 0.407751582 0.208733529 4.77292613 0.630226492 0.209890637 1.751065701 1.89E-05 4.723969804 -0.869502144 LYMVLITTK ddPTM_HeLa_A485_30min_R1 1 LYMVLITTK 9 0 B0YIW6;P48444;Q6P1Q5 B0YIW6 ARCN1 Coatomer subunit delta 0 0 150.28 0.00026052 10598000 27287 30962 29874 29782 40888 31013 38413 39262 23538 40646 FALSE FALSE TRUE 33356.89901 34582.73657 40925.63576 31408.91525 36817.04715 32636.79272 30205.74874 29632.93294 28261.8607 30513.70023 1.093177778 1.133351128 1.341221663 1.029338134 1.206574321 1.069578336 0.989907763 0.971135349 0.926202345 1 14.89716952 -6.604529651 2.163285459 0.963412412 1.163100633 0.564226161 0.07805726 0.230600298 2.192778673 0.034993125 0.025480676 2.49E-07 6.604529651 0.199688221 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR ddPTM_HeLa_A485_30min_R1 1 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR 31 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 92.238 1.28E-05 17757000 4155.9 2968.9 3817.4 5502.1 1994.2 6083.1 9345.3 8623.9 1123.1 8432.8 FALSE FALSE TRUE 5080.365617 3316.087029 5229.615115 5802.665791 1795.650446 6401.60171 7348.600311 6508.875003 1348.495868 6330.658154 0.802501966 0.523813946 0.826077635 0.916597556 0.283643565 1.011206348 1.160795629 1.028151394 0.213010375 1 12.62813978 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR ddPTM_HeLa_A486_30min_R1 1 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR 31 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 190.48 1.87E-34 19417000 2343.2 8109 9824.3 2802.6 14318 11953 13030 10538 11401 11223 FALSE FALSE TRUE 2178.95378 7466.413308 13628.53206 6524.594436 12522.10293 10478.36039 9769.756183 8138.727443 12389.24786 8412.687751 0.259008042 0.887518178 1.619997374 0.775565982 1.488478272 1.245542531 1.161312112 0.967434866 1.472686046 1 13.03835108 -4.373559964 3.408778404 1.210613373 0.233593168 0.574709417 0.249941581 0.170661346 3.20630339 0.059175787 0.354147358 4.23E-05 4.373559964 -0.977020205 LYPPGDEEEAELADS(ph)SGLYHEGSPSPGSPWK ddPTM_HeLa_A486_30min_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADS(0.356)S(0.356)GLY(0.001)HEGS(0.282)PS(0.004)PGSPWK 87.206 0.00024598 108430000 17657 19156 13935 3339.7 24458 18740 21813 16997 19644 21291 TRUE FALSE FALSE 16419.33548 17638.0088 19331.00519 7774.990379 21390.24958 16428.04933 16355.15669 13127.15414 21346.75774 15959.59502 1.028806524 1.105166439 1.211246599 0.487167147 1.340275211 1.029352519 1.024785195 0.822524264 1.337550089 1 13.96213642 LYPPGDEEEAELADSSGLYHEGS(ph)PSPGSPWK ddPTM_HeLa_A485_30min_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADS(0.129)S(0.129)GLY(0.003)HEGS(0.364)PS(0.336)PGS(0.039)PWK 53.288 0.018465 135070000 30454 31342 31216 32865 41813 43437 43280 45894 29208 40460 TRUE FALSE FALSE 37228.38723 35007.17426 42764.09741 34660.33173 37649.95091 45711.29415 34032.87443 34638.42454 35069.77769 30374.06661 1.22566358 1.15253498 1.407914783 1.141115945 1.239542646 1.504944818 1.12045828 1.140394699 1.154596062 1 14.89055246 -7.711248864 1.089672852 1.0189875 1.264513118 0.33489754 0.113984054 0.56273921 1.350927734 0.10787138 0.036570035 1.94E-08 7.711248864 0.245525618 LYPPGDEEEAELADSSGLYHEGS(ph)PSPGSPWK ddPTM_HeLa_A486_30min_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADSSGLYHEGS(0.987)PS(0.012)PGSPWK 157.12 2.52E-10 107860000 33131 36858 29753 4180.3 53271 48334 44510 44974 42957 42946 TRUE FALSE FALSE 30808.68799 33937.23785 41274.15841 9731.949661 46589.25445 42371.0425 33373.12722 34734.40198 46680.54735 32192.04207 0.957028073 1.054212025 1.282123027 0.302309174 1.447228925 1.316196171 1.03668873 1.078974795 1.450064809 1 14.97441648 LYPPGDEEEAELADSSGLYHEGSPSPGS(ph)PWK ddPTM_HeLa_A485_30min_R1 2 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADSSGLYHEGS(0.045)PS(0.037)PGS(0.918)PWK;LYPPGDEEEAELADSSGLYHEGSPS(0.001)PGS(0.999)PWK ; 273.54 1.61E-77 424840000 70933 69898 75376 85326 100483 101583 129547 127225 70534 123991 TRUE FALSE FALSE 86711.80113 78071.96307 103260.7191 89987.14332 90478.5597 106901.7288 101868.2251 96022.86927 84689.52682 93082.32559 0.931560321 0.838741002 1.109348294 0.966747906 0.972027279 1.14846431 1.094388484 1.031590784 0.909834668 1 16.50621964 -4.754161972 24.99994417 1.032515143 0.885150637 0.39043424 0.071816644 167.0266855 573769.722 0.018913854 0.047899393 1.76E-05 4.754161972 -0.147364506 LYPPGDEEEAELADSSGLYHEGSPSPGS(ph)PWK ddPTM_HeLa_A486_30min_R1 2 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADSSGLYHEGSPSPGS(1)PWK;LYPPGDEEEAELADSSGLYHEGSPS(0.001)PGS(0.998)PWK ; 390.38 2.21E-193 427220000 143645 164820 103424 20971.8 194317 160001 205241 187939 150239 157645 TRUE FALSE FALSE 133576.2273 151759.0629 143472.5426 48823.41026 169943.9499 140261.7034 153887.531 145149.3924 163261.8375 118169.6659 1.130376618 1.284247203 1.214123282 0.413163648 1.438135148 1.186951849 1.30225917 1.22831347 1.381588382 1 16.85050022 LYQHAVEYFLHAIK ddPTM_HeLa_A485_30min_R1 2 LYQHAVEYFLHAIK 14 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 0 0 ; ; 182.02 9.38E-11 66785000 105931 117593 109297 119937 140478 119461 155374 148849 100915 152304 FALSE FALSE TRUE 129494.9855 131344.4784 149730.5085 126488.8546 126491.5171 125715.7932 122177.0756 112343.5494 121167.7149 114337.4157 1.132568763 1.148744508 1.309549525 1.106277012 1.106300298 1.099515783 1.068566005 0.982561558 1.059738092 1 16.80293806 -6.306437114 0.893948263 1.014544518 1.187578731 0.600015915 0.0543345 0.411865627 0.703322062 0.035517116 0.031443499 4.94E-07 6.306437114 0.173034213 LYQHAVEYFLHAIK ddPTM_HeLa_A486_30min_R1 2 LYQHAVEYFLHAIK 14 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 0 0 ; ; 180.11 1.10E-10 71444000 131255 139864 115011 50354 147542 132156 175808 158371 134832 164281 FALSE FALSE TRUE 122054.7023 128780.6673 159546.3393 117226.6568 129035.9066 115851.9364 131818.9789 122313.3805 146519.3463 123143.9683 0.991154532 1.045773244 1.295608234 0.95194802 1.047845935 0.940784498 1.070446086 0.993255148 1.189821542 1 16.90998644 -4.294434592 5.815733965 1.059817397 0.990201308 0.038551876 0.103290861 0.553738463 59.19975932 0.025570509 0.120364588 5.08E-05 4.294434592 -0.069616089 LYSGRPNS(ph)GSR ddPTM_HeLa_A486_30min_R1 1 LYSGRPNSGSR 11 1 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;C9JP19;C9JQZ8 A0A087WVP4 SMTN Smoothelin 1 0 LYSGRPNS(0.969)GS(0.031)R 67.964 0.0036692 0 47413 49721 46020 18487 63066 43699 43108 51113 40507 44338 TRUE FALSE FALSE 44089.59354 45780.92688 63840.17646 43038.67028 55155.67421 38307.86168 32321.92245 39475.68569 44018.17937 33235.47621 1.326582272 1.377471669 1.920844343 1.294961745 1.659542167 1.152619612 0.972512692 1.187757487 1.324433539 1 15.0204364 -6.285385042 16.34295308 1.129507462 1.518413871 0.503544229 0.192822554 9.000161711 6141.510407 0.067593535 0.059811665 5.18E-07 6.285385042 0.388906409 LYSGS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 LYSGSPTR 8 0 Q6PJI9-4;Q6PJI9-3;Q6PJI9;H3BMH3 Q6PJI9-4 WDR59 WD repeat-containing protein 59 1 0 LYSGS(0.591)PT(0.408)R;LYS(0.392)GS(0.513)PT(0.096)R;LYSGS(0.998)PT(0.002)R ;; 146.48 0.0003096 1743000000 1030560 1506580 1446250 1031230 1599920 1338390 1474660 1639350 1278660 1389890 TRUE FALSE FALSE 1259804.517 1682761.425 1981278.058 1087563.484 1440626.347 1408466.031 1159586.844 1237296.842 1535275.333 1043416.002 1.2073847 1.61274259 1.8988381 1.042310528 1.380682627 1.349860485 1.111337033 1.185813558 1.471393318 1 19.99288303 -5.275213218 24.99748109 1.235495271 1.576963904 0.370115171 0.210223829 832.7057795 1511235.881 0.058878368 0.087844585 5.31E-06 5.275213218 0.341468634 LYSGS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 LYSGSPTR 8 0 Q6PJI9-4;Q6PJI9-3;Q6PJI9;H3BMH3 Q6PJI9-4 WDR59 WD repeat-containing protein 59 1 0 LYS(0.02)GS(0.98)PTR;LYS(0.019)GS(0.917)PT(0.064)R;LYSGS(0.991)PT(0.009)R ;; 157.49 9.15E-05 1896690000 1564890 1732520 1431970 461500 1851090 1366590 1564130 1624720 1272760 1540340 TRUE FALSE FALSE 1455199.292 1595228.805 1986467.133 1074395.323 1618909.031 1197994.02 1172768.13 1254806.723 1383083.862 1154628.838 1.260317813 1.38159446 1.720437831 0.930511423 1.40210341 1.037557682 1.015710063 1.086761981 1.19786014 1 20.13899773 -5.271696073 24.9987365 1.106401971 1.446864488 0.503163972 0.16288505 576.0068126 1403905.913 0.045379319 0.068167512 5.35E-06 5.271696073 0.340462517 LYSILQGDS(ph)PTKWR ddPTM_HeLa_A485_30min_R1 2 LYSILQGDSPTKWR 14 1 O15042-2;O15042;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 LYSILQGDS(0.797)PT(0.203)KWR;LYSILQGDS(0.931)PT(0.069)KWR ; 149.19 3.08E-08 1462780000 191617 198049 171379 274340 297690 239500 380740 356000 217640 356660 TRUE FALSE FALSE 234241.5406 221209.1078 234779.2238 289326.4995 268050.9383 252039.8497 299391.7886 268690.4418 261318.3517 267751.2258 0.874847687 0.826174024 0.876855832 1.080579552 1.001119369 0.941320993 1.118171496 1.003507793 0.975974436 1 18.03053365 -5.151329091 5.652404889 1.017425091 0.851421017 0.688766712 0.048778075 0.125949751 5.50336785 0.013313211 0.023492971 7.06E-06 5.151329091 -0.166004074 LYSILQGDS(ph)PTKWR ddPTM_HeLa_A486_30min_R1 2 LYSILQGDSPTKWR 14 1 O15042-2;O15042;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 LYSILQGDS(0.991)PT(0.009)KWR;LYSILQGDS(0.998)PT(0.002)KWR ; 254.72 7.63E-42 1479490000 470400 492080 319630 277660 567600 540370 751180 759560 395210 735050 TRUE FALSE FALSE 437427.3891 453085.7887 443399.296 646406.5122 496406.3153 473704.6435 563226.8188 586624.7691 429467.121 550988.6956 0.793895397 0.822314128 0.804733926 1.173175634 0.900937386 0.859735685 1.022211206 1.064676596 0.779448153 1 19.07166319 -5.115114233 19.92394245 0.970243324 0.808359665 0.345595782 0.103695244 5.143645764 873.3067854 0.027709723 0.047995001 7.67E-06 5.115114233 -0.161883659 LYSLLFR ddPTM_HeLa_A485_30min_R1 2 LYSLLFR 7 0 Q9UDW1-2;Q9UDW1 Q9UDW1-2 UQCR10 Cytochrome b-c1 complex subunit 9 0 0 ; ; 122.79 0.0095065 33348000 26782 34210 28588 32460 34465 27824 35716 32342 25979 61009 FALSE FALSE TRUE 32739.5635 38210.56191 39163.89085 34233.20761 31033.54359 29280.82162 28084.98483 24410.07379 31192.74701 45800.57909 0.714828593 0.834281196 0.855095975 0.747440497 0.677579721 0.639311166 0.613201522 0.532964305 0.681055734 1 15.48307822 -5.648488334 2.989254035 0.65959791 0.804631926 0.114219627 0.121182756 0.382380556 6.850764259 0.036158545 0.048248606 2.25E-06 5.648488334 0.145034016 LYSLLFR ddPTM_HeLa_A486_30min_R1 1 LYSLLFR 7 0 Q9UDW1-2;Q9UDW1 Q9UDW1-2 UQCR10 Cytochrome b-c1 complex subunit 9 0 0 135.35 0.0048951 13979000 14188 22934 22720 7147.1 27528 20848 24347 22645 26712 23636 FALSE FALSE TRUE 13193.49447 21116.62632 31517.79246 16638.80999 24075.18155 18275.98573 18255.12308 17489.22784 29027.41767 17717.39176 0.744663472 1.191858633 1.778918302 0.939122994 1.358844568 1.031528002 1.030350479 0.987122037 1.638357274 1 14.11287861 -4.267043983 6.456234702 1.219280782 0.735905952 0.209573237 0.275682456 0.176709361 44.2088034 0.067331464 0.376187336 5.41E-05 4.267043983 -0.48337483 LYSLLGIDLTAPS(ph)NNSSPRDS(ph)PCKENK ddPTM_HeLa_A486_30min_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 2 0 LYSLLGIDLTAPS(0.591)NNS(0.198)S(0.227)PRDS(0.984)PCKENK 129.25 4.38E-06 126050000 30152 27129 14803 26853 22723 45722 56448 50171 20983 67566 TRUE FALSE FALSE 28038.50051 24979.19924 20535.11804 62515.14108 19872.86946 40081.28451 42324.11335 38748.15853 22801.82333 50647.03382 0.553605974 0.493201622 0.405455492 1.23432976 0.39237973 0.791384638 0.835668156 0.765062741 0.450210439 1 15.62819016 LYSLLGIDLTAPSNNS(ph)S(ph)PRDS(ph)PCKENK ddPTM_HeLa_A485_30min_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 3 0 LYSLLGIDLT(0.006)APS(0.504)NNS(0.612)S(0.883)PRDS(0.996)PCKENK 62.302 0.019422 37990000 13212 11355 8006.7 28450 20454 14155 29331 25356 8756.5 37286 TRUE FALSE FALSE 16150.96382 12682.86847 10968.71152 30004.15146 18417.52794 14896.13391 23064.19224 19137.40124 10513.84923 27991.2864 0.576999699 0.453100593 0.391861644 1.071910416 0.657973616 0.532170394 0.823977573 0.683691381 0.375611506 1 14.77269017 LYSLLGIDLTAPSNNSS(ph)PRDS(ph)PCKENK ddPTM_HeLa_A485_30min_R1 2 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 2 0 LYSLLGIDLTAPS(0.034)NNS(0.106)S(0.862)PRDS(0.998)PCKENK;LYSLLGIDLTAPS(0.001)NNS(0.037)S(0.964)PRDS(0.998)PCKENK ; 136.48 1.78E-06 163879000 184112 139179 105064 358030 237326 187322 303520 257194 130596 462750 TRUE FALSE FALSE 225067.0792 155454.7734 143931.5457 377588.2723 213696.9901 197129.8903 238670.4725 194116.7682 156805.4193 347394.9413 0.647870917 0.447487153 0.414316758 1.08691356 0.615141341 0.567451816 0.687029211 0.558778339 0.45137508 1 18.40621722 -10.56625974 2.899106359 1.021397187 0.611947373 0.295130495 0.181445903 74779707.06 77267626.95 12360874.44 0.045797904 2.71E-11 10.56625974 -0.409449814 LYSLLGIDLTAPSNNSSPRDS(ph)PCKENK ddPTM_HeLa_A485_30min_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 0 LYSLLGIDLTAPS(0.011)NNS(0.042)S(0.042)PRDS(0.906)PCKENK 121.09 2.88E-05 129180000 97892 78789 48540 135000 96914 77628 119470 123140 53882 163220 TRUE FALSE FALSE 119667.7377 88002.68818 66496.96592 142374.7082 87264.90187 81692.48204 93944.25852 92939.72192 64695.62317 122532.2578 0.976622318 0.718200168 0.542689469 1.161936544 0.712179008 0.666701842 0.766690014 0.758491874 0.527988501 1 16.90280208 LYSLLGIDLTAPSNNSSPRDS(ph)PCKENK ddPTM_HeLa_A486_30min_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 0 LYSLLGIDLTAPSNNS(0.001)S(0.001)PRDS(0.999)PCKENK 186.17 1.25E-20 127040000 85691 73348 35392 51673 63246 85544 110970 100170 54874 123080 TRUE FALSE FALSE 79684.50341 67535.63735 49096.73023 120297.3554 55313.09693 74990.45103 83204.13228 77363.4777 59630.5225 92259.96688 0.863695339 0.732014541 0.532156383 1.303895497 0.599535192 0.8128168 0.901844376 0.838537887 0.646331497 1 16.49341715 -11.20657851 2.341443094 1.590291633 0.806273041 0.078018455 0.202514016 25021850.45 4029646.656 78537493.55 0.04904136 6.21E-12 11.20657851 -0.784018592 LYSPSQIGAFVLMK ddPTM_HeLa_A485_30min_R1 2 LYSPSQIGAFVLMK 14 0 P38646;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 144.47 2.05E-05 15295000 10447.7 9662.4 11448.4 12439.3 15665.5 10972.4 15427 14219.1 9846.7 18721 FALSE FALSE TRUE 12771.75482 10792.33363 15683.63957 13118.82746 14105.78782 11546.8979 12130.89542 10731.84343 11822.84237 14054.19923 0.90875009 0.767908114 1.115939749 0.933445388 1.003670688 0.821597709 0.86315095 0.763604048 0.841232017 1 13.77871364 -6.274904636 24.69025928 0.843469319 0.944801965 0.158561845 0.098602673 1133.971036 2079273.566 0.034615867 0.030704369 5.31E-07 6.274904636 0.101332646 LYSVSYLLK ddPTM_HeLa_A485_30min_R1 3 LYSVSYLLK 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;; ;; 233.21 1.76E-23 165579000 271031 331378 284454 272445 383578 318101 401461 455561 282347 366354 FALSE FALSE TRUE 331320.9109 370129.7745 389685.3717 287327.9805 345387.6275 334756.2765 315685.5777 343833.9505 339011.4531 275028.69 1.204677631 1.34578605 1.416889895 1.044720027 1.255823992 1.217168567 1.147827805 1.250174847 1.232640322 1 18.0692226 -14 0.139792799 0.210863166 1.318805321 0.371071433 0.094104554 155.6366743 1.332146555 34.4170342 0.598587817 1.00E-14 14 1.107942155 LYSVSYLLK ddPTM_HeLa_A486_30min_R1 2 LYSVSYLLK 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 238.83 1.12E-23 148897000 257190 278320 216220 82186 300040 258170 287780 287540 222710 275370 FALSE FALSE TRUE 239162.3091 256264.9096 299946.1746 191333.1615 262406.1854 226319.6103 215774.4002 222073.419 242014.6821 206415.5596 1.158644772 1.241499963 1.453118045 0.926931874 1.271251963 1.096427085 1.045339802 1.075856003 1.172463367 1 17.6551922 -5.262562443 24.99978942 1.093903552 1.280128823 0.404235582 0.110990051 106.5592874 2372058.927 0.030147816 0.047691436 5.46E-06 5.262562443 0.186225271 LYTLVLVLQPQR ddPTM_HeLa_A485_30min_R1 2 LYTLVLVLQPQR 12 0 C9J361;P36639-4;P36639-3;P36639-2;P36639 C9J361 NUDT1 "7,8-dihydro-8-oxoguanine triphosphatase" 0 0 ; ; 217.47 2.29E-20 27005000 16951.1 14008.5 16437.5 13737.2 22480.3 24074.4 28508 32239 9644.7 24097.7 FALSE FALSE TRUE 20721.81371 15646.67222 22518.41527 14487.62845 20242.0824 25334.89836 22417.03291 24332.3347 11580.30282 18090.58688 1.14544729 0.864906834 1.244758693 0.800837947 1.118929006 1.400446461 1.239154543 1.345027382 0.640128643 1 14.14295159 -4.765305425 24.99990525 1.116865817 1.00517709 0.020405827 0.233227821 375.5597568 2428637.485 0.060853525 0.13483647 1.72E-05 4.765305425 -0.111688727 LYTLVLVLQPQR ddPTM_HeLa_A486_30min_R1 2 LYTLVLVLQPQR 12 0 C9J361;P36639-4;P36639-3;P36639-2;P36639 C9J361 NUDT1 "7,8-dihydro-8-oxoguanine triphosphatase" 0 0 ; ; 208.03 2.45E-14 7515500 7951.4 10260.7 11984.9 6083.2 16214.9 11945.7 14428.2 13422.4 14683.1 12320.5 FALSE FALSE TRUE 7394.047921 9447.604763 16625.77425 14161.99703 14181.07604 10471.96099 10818.11175 10366.41253 15955.84293 9235.366607 0.800623109 1.022981021 1.800228941 1.53345261 1.535518475 1.133897704 1.171378703 1.122468979 1.727689177 1 13.17295352 -10.71761669 6.814438305 0.996195991 1.319548311 0.087211857 0.307006052 0.018710829 0.000775356 0.313468569 0.075400706 1.92E-11 10.71761669 0.32335232 LYTLVTYVPVTTFK ddPTM_HeLa_A485_30min_R1 2 LYTLVTYVPVTTFK 14 0 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 0 0 ; ; 232 1.53E-29 40935000 91770 80249 85595 117066 118446 79132 103701 78181 90468 177886 FALSE FALSE TRUE 112183.9199 89633.42248 117260.1524 123461.0192 106653.1004 83275.22916 81544.43419 59006.98717 108624.0978 133542.2939 0.840062849 0.671198763 0.87807502 0.924508749 0.79864661 0.62358693 0.61062628 0.441859919 0.81340596 1 17.0269372 -6.188026694 5.534893145 0.657783029 0.82470981 0.119925917 0.151087286 0.350404042 19.55546466 0.049194014 0.04902093 6.49E-07 6.188026694 0.166926781 LYTLVTYVPVTTFK ddPTM_HeLa_A486_30min_R1 2 LYTLVTYVPVTTFK 14 0 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 0 0 ; ; 232 1.53E-29 61444000 126237 148977 108222 45777 138745 148858 156968 140639 137985 143831 FALSE FALSE TRUE 117388.4382 137171.52 150128.4567 106571.1694 121342.3084 130493.4134 117692.9462 108618.5698 149945.6509 107814.7814 1.088797256 1.272288625 1.392466364 0.988465292 1.125470059 1.210348078 1.091621618 1.007455271 1.39077081 1 16.71819546 -5.263460046 24.99948679 1.119887021 1.25329453 0.180089954 0.131706397 310.7699292 3844840.327 0.035816788 0.056214953 5.45E-06 5.263460046 0.133407509 LYVELHR ddPTM_HeLa_A485_30min_R1 2 LYVELHR 7 0 A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 0 0 ; ; 119.89 0.0024372 81266000 49185 61618 66695 47992 69587 58779 67255 56612 57044 67127 FALSE FALSE TRUE 60126.03356 68823.68909 91368.25591 50613.68144 62658.67395 61856.57755 52885.41983 42727.81824 68492.20756 50393.47428 1.193131341 1.365726219 1.813096978 1.004369755 1.24338865 1.227471978 1.049449767 0.847883954 1.359148353 1 15.6209493 -5.296803731 24.99960246 1.106805465 1.44815931 0.398460107 0.198528829 600.16405 424263.8999 0.056142519 0.083276405 5.05E-06 5.296803731 0.341353844 LYVELHR ddPTM_HeLa_A486_30min_R1 2 LYVELHR 7 0 A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 0 0 ; ; 119.89 0.0024372 82424000 62640 79969 67765 18736.4 79953 69849 74607 66930 67778 77986 FALSE FALSE TRUE 58249.25947 73631.9652 94005.42281 43619.28609 69924.54921 61231.74055 55939.53949 51691.50007 73653.05161 58457.798 0.996432665 1.259574731 1.608090384 0.746167108 1.196154347 1.047452053 0.956921769 0.884253288 1.259935443 1 15.83510787 -5.268499678 24.997069 1.014893075 1.285186809 0.29744491 0.193681729 684.3333205 2422889.26 0.053574237 0.081447459 5.39E-06 5.268499678 0.270293734 MAAAGGTVSGPS(ph)SACKPGR ddPTM_HeLa_A485_30min_R1 1 MAAAGGTVSGPSSACKPGR 19 1 A0A087X2H1;Q9ULT8;A0A087WVU6;G3V4V5 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 MAAAGGTVSGPS(0.5)S(0.5)ACKPGR 120.71 7.27E-06 240490000 101920 99861 88188 102900 160730 97255 134170 131130 99421 137500 TRUE FALSE FALSE 124591.7524 111538.8753 120812.411 108521.1664 144727.1568 102347.1214 105503.4834 98970.1619 119373.8828 103223.7805 1.20700629 1.080554062 1.170393202 1.051319434 1.40207185 0.991507198 1.022085056 0.958792261 1.156457186 1 16.65541585 MAAAGGTVSGPS(ph)SACKPGR ddPTM_HeLa_A486_30min_R1 1 MAAAGGTVSGPSSACKPGR 19 1 A0A087X2H1;Q9ULT8;A0A087WVU6;G3V4V5 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 MAAAGGTVSGPS(0.572)S(0.428)ACKPGR 150.69 6.91E-09 301290000 224510 231200 135930 107830 220210 231430 302280 258920 156810 248980 TRUE FALSE FALSE 208773.0084 212878.87 188565.7363 251033.6894 192589.2084 202878.5196 226646.3468 199969.5682 170402.4171 186633.7874 1.118623864 1.140623426 1.01035155 1.345060254 1.031909662 1.087040682 1.214390759 1.071454269 0.913030912 1 17.50985066 -7.583577176 5.110168858 0.96085534 1.133811043 0.375722278 0.091221024 0.209598966 10.92850701 0.062683154 0.022625494 2.61E-08 7.583577176 0.172955703 MAAAGGTVSGPSS(ph)ACKPGR ddPTM_HeLa_A486_30min_R1 1 MAAAGGTVSGPSSACKPGR 19 1 A0A087X2H1;Q9ULT8;A0A087WVU6;G3V4V5 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 MAAAGGTVSGPS(0.004)S(0.996)ACKPGR 195.18 2.56E-19 246150000 210260 207700 122510 82331 215880 196760 234620 227230 153170 237330 TRUE FALSE FALSE 195521.8598 191241.0956 169949.1529 191670.7288 188802.3174 172485.7517 175915.5944 175494.6894 166446.8989 177901.0232 1.09904854 1.074985922 0.955301717 1.077400935 1.061277299 0.9695602 0.9888397 0.986473749 0.935615186 1 17.44071528 -6.263371651 24.95249159 0.976048745 1.050651769 0.493355698 0.039213999 159.1561367 2055262.292 0.01386428 0.012871457 5.45E-07 6.263371651 0.074603024 MAAT(ph)MFRAT(ph)LR ddPTM_HeLa_A485_30min_R1 1 MAATMFRATLR 11 1 E9PRD2;E9PI78;E9PNF1;Q13405 E9PRD2 MRPL49 "39S ribosomal protein L49, mitochondrial" 2 0 MAAT(1)MFRAT(1)LR 48.625 0.0076269 0 132680 188780 174890 182090 252270 200440 246840 288370 203440 250350 TRUE FALSE FALSE 162194.2083 210856.1788 239589.0888 192037.1156 227153.113 210934.7285 194100.6175 217646.8054 244268.5419 187942.3524 0.862999777 1.121919441 1.274800947 1.021787337 1.20863185 1.122337386 1.032766777 1.158050874 1.29969929 1 17.51993069 -4.267971138 5.247680693 1.142703667 0.852225461 0.419453671 0.097077705 0.138431566 13.28486995 0.02334951 0.144407857 5.40E-05 4.267971138 -0.290478206 MADHLEGLS(ph)S(ph)DDEETSTDITNFNLEK ddPTM_HeLa_A486_30min_R1 2 MADHLEGLSSDDEETSTDITNFNLEK 26 0 Q9Y5B6-2;Q9Y5B6 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 2 0 MADHLEGLS(1)S(1)DDEETSTDITNFNLEK;MADHLEGLS(1)S(1)DDEETSTDITNFNLEK ; 195.54 3.63E-21 103838000 224360 243770 152708 100542 249120 246620 269230 257480 194043 260250 TRUE FALSE FALSE 208633.5226 224452.7774 211840.6273 234066.8571 217873.0466 216194.5318 201865.8064 198857.4247 210862.8035 195081.7061 1.069467388 1.150557794 1.08590719 1.199840117 1.116829717 1.108225554 1.034775687 1.01935455 1.080894809 1 17.57371897 -6.690158832 3.509994479 1.034483729 1.126915484 0.562701015 0.038177017 0.17436536 4.283238993 0.015455937 0.011262914 2.04E-07 6.690158832 0.092431755 MAEAPAS(ph)PAPLSPLEVELDPEFEPQSRPR ddPTM_HeLa_A486_30min_R1 1 MAEAPASPAPLSPLEVELDPEFEPQSRPR 29 1 O43524;A0A2Z4LIS9 O43524 FOXO3 Forkhead box protein O3 1 0 MAEAPAS(0.921)PAPLS(0.079)PLEVELDPEFEPQS(0.001)RPR 49.942 0.016987 31803000 9981 12761 10127 5679.4 13945 9145.6 9186.6 11789 8546.1 10081 TRUE FALSE FALSE 9281.383442 11749.77189 14048.44561 13221.93022 12195.88807 8017.308858 6888.015514 9104.902052 9286.882829 7556.651984 1.22824016 1.554891228 1.859083314 1.749707443 1.61392745 1.060960446 0.911516837 1.204885718 1.228967914 1 12.88353147 -6.259408183 23.66943232 1.083462179 1.621179531 0.688426785 0.174619238 53.29457951 621041.477 0.063668899 0.060621127 5.50E-07 6.259408183 0.537717352 MAESMLAILCHILR ddPTM_HeLa_A485_30min_R1 2 MAESMLAILCHILR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 0 ; ; 162.32 1.22E-07 49322000 30263 38103 37296 25735 53033 25278 40296 37918 26420 41848 FALSE FALSE TRUE 36994.89994 42558.8144 51093.34242 27140.83789 47752.84831 26601.51699 31686.43041 28618.55105 31722.25166 31416.06376 1.177579096 1.35468322 1.626344497 0.863915928 1.520013732 0.846748886 1.008606 0.910952794 1.009746221 1 14.93921481 -6.272679066 24.9965725 0.952982523 1.30403073 0.447974762 0.196053674 697.6745252 1551593.071 0.06651054 0.059173235 5.34E-07 6.272679066 0.351048206 MAESMLAILCHILR ddPTM_HeLa_A486_30min_R1 2 MAESMLAILCHILR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 0 ; ; 180.54 9.43E-11 30678000 34401 34501 32187 12347.3 39815 30709 39275 38016 31501 34842 FALSE FALSE TRUE 31989.66755 31767.01511 44650.6684 28745.1384 34821.03144 26920.43581 29447.97959 29360.58668 34231.53204 26117.33642 1.224844182 1.216319099 1.709617998 1.100615237 1.333253548 1.030749667 1.127526143 1.124179978 1.310682357 1 14.67272015 MAET(ph)YRRSR ddPTM_HeLa_A486_30min_R1 2 MAETYRRSR 9 2 Q9UFV3 Q9UFV3 Putative uncharacterized protein DKFZp434L187 1 0 MAET(0.5)Y(0.001)RRS(0.5)R;MAET(0.499)Y(0.002)RRS(0.499)R ; 53.751 0.027453 963060000 1120800 1296110 1487840 60996 1504120 865400 886520 1034880 1205210 488490 TRUE FALSE FALSE 1042237.708 1193401.523 2063971.494 142001.7706 1315459.244 758635.7467 664703.3193 799260.4153 1309678.573 366168.9245 2.846330309 3.259155662 5.636664817 0.387803992 3.592492853 2.071819032 1.815291454 2.182764189 3.576705956 1 18.48214983 -5.261159129 24.99999963 2.189291711 3.848560684 0.342579458 1.15137166 30.75783331 2743662.847 0.308536059 0.494563652 5.48E-06 5.261159129 1.659268974 MAFTHHPLPVLAGVRPGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 MAFTHHPLPVLAGVRPGSPR 20 1 K7EN08;Q14938-6;Q14938-5;Q14938-3;Q14938-4;Q14938 K7EN08 NFIX Nuclear factor 1;Nuclear factor 1 X-type 1 0 MAFTHHPLPVLAGVRPGS(1)PR;MAFTHHPLPVLAGVRPGS(1)PR ; 179.5 4.42E-19 2824900000 1276700 1785250 1675650 1180760 1812860 1621660 1749430 2040910 1419940 1804740 TRUE FALSE FALSE 1560697.51 1994019.458 2295542.665 1245261.929 1632365.293 1706567.61 1375649.989 1540373.622 1704908.934 1354851.532 1.151932499 1.471762338 1.694313075 0.919113202 1.204829647 1.259597506 1.015351097 1.136931676 1.258373256 1 20.36970334 -5.266493304 24.99961984 1.1249708 1.442578606 0.459546109 0.161601291 379.8057884 1878738.667 0.045268647 0.069518342 5.41E-06 5.266493304 0.317607806 MAFTHHPLPVLAGVRPGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 MAFTHHPLPVLAGVRPGSPR 20 1 K7EN08;Q14938-6;Q14938-5;Q14938-3;Q14938-4;Q14938 K7EN08 NFIX Nuclear factor 1;Nuclear factor 1 X-type 1 0 MAFTHHPLPVLAGVRPGS(1)PR;MAFTHHPLPVLAGVRPGS(1)PR ; 134.34 1.77E-07 2754800000 1674610 1862130 1717620 656340 2242100 1644020 1902840 2053260 1688130 1982540 TRUE FALSE FALSE 1557228.487 1714568.037 2382728.463 1527992.69 1960874.911 1441197.528 1426729.306 1585777.52 1834458.468 1486099.08 1.047863166 1.153737365 1.603344283 1.028190321 1.319477912 0.969785627 0.960049922 1.067073886 1.234411953 1 20.50309887 -6.262983552 24.99583451 1.045067998 1.235728396 0.233275602 0.166884808 216.323767 3501655.888 0.057836111 0.053751584 5.46E-07 6.262983552 0.190660398 MAGNEALS(ph)PTSPFR ddPTM_HeLa_A485_30min_R1 2 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 MAGNEALS(0.957)PT(0.042)S(0.001)PFR;MAGNEALS(0.996)PT(0.003)S(0.001)PFR ; 152.94 4.13E-08 260730000 217160 292400 238460 191385 296680 236220 266490 261080 197513 235860 TRUE FALSE FALSE 265466.4928 326593.6365 326676.2771 201839.8779 267141.4975 248588.1139 209552.2345 197049.7206 237152.0474 177064.4427 1.499264837 1.84449024 1.844956967 1.139923267 1.508724696 1.40394147 1.183480044 1.112870081 1.33935444 1 17.433915 -5.816604842 0.494075425 1.099740525 1.805185527 0.554618325 0.185952814 0.985957643 0.473179235 0.160919154 0.337306561 1.53E-06 5.816604842 0.705445002 MAGNEALS(ph)PTSPFR ddPTM_HeLa_A486_30min_R1 2 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 MAGNEALS(0.645)PT(0.351)S(0.004)PFR;MAGNEALS(0.842)PT(0.144)S(0.014)PFR ; 177.04 6.55E-13 187089000 174610 172200 135783 52257 196227 151837 180260 187939 135284 179900 TRUE FALSE FALSE 162370.7407 158554.2449 188361.814 121656.9369 171614.3799 133104.8947 135157.0414 145149.3924 147010.526 134851.869 1.20406741 1.175766016 1.396805364 0.902152397 1.272614026 0.987045234 1.002263019 1.07636174 1.090163059 1 17.04101599 -5.260187116 24.99960464 1.055420104 1.250568231 0.45465383 0.105841878 106.9827535 2135728.839 0.028213265 0.045562087 5.49E-06 5.260187116 0.195148127 MAGNEALSPTS(ph)PFR ddPTM_HeLa_A485_30min_R1 1 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 MAGNEALS(0.002)PT(0.015)S(0.983)PFR 125.52 2.86E-05 116960000 147470 212840 181970 174000 228930 179830 206680 187210 158200 217090 TRUE FALSE FALSE 180274.1927 237729.7865 249288.2754 183505.1794 206136.9254 189245.6207 162521.1296 141296.454 189949.2889 162973.4582 1.106156761 1.458702473 1.529624996 1.125981994 1.264849673 1.16120516 0.997224526 0.866990585 1.165522846 1 17.3142775 -6.253709376 1.167778738 0.993381018 1.345912593 0.489582259 0.138956531 0.386908417 1.089741581 0.072258713 0.065575296 5.58E-07 6.253709376 0.352531575 MAGNEALSPTS(ph)PFR ddPTM_HeLa_A486_30min_R1 1 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 MAGNEALSPTS(1)PFR 149 6.46E-08 108220000 214050 243780 199770 71002 278920 225960 240950 245030 190750 212930 TRUE FALSE FALSE 199046.2004 224461.985 277126.294 165296.2442 243935.2528 198083.3526 180661.7615 189242.018 207284.3636 159610.9421 1.247071146 1.406306999 1.736261252 1.035619752 1.528311591 1.241038678 1.131888323 1.185645643 1.298685171 1 17.28420003 -6.47723494 7.184068542 1.171579849 1.391006399 0.273086314 0.182400499 0.356820804 47.89349648 0.063737679 0.05535597 3.33E-07 6.47723494 0.21942655 MALDIEIATYR ddPTM_HeLa_A485_30min_R1 1 MALDIEIATYR 11 0 P08670;B0YJC4;B0YJC5;H7C5W5;P41219-2;P41219 P08670 VIM;PRPH Vimentin;Peripherin 0 0 131.12 0.00015907 0 121870 144910 146200 124750 174940 138910 160210 170080 127160 180440 FALSE FALSE TRUE 148979.5611 161855.964 200285.4639 131564.7766 157522.3593 146183.1128 125979.8247 128367.6133 152679.8456 135459.6288 1.099807835 1.19486496 1.478562032 0.971247137 1.162873107 1.07916369 0.930017496 0.947644804 1.127124347 1 17.04750342 -5.29586585 24.99996878 1.032246269 1.251457116 0.456128095 0.113319103 560.4120971 406961.4133 0.032745358 0.04857174 5.06E-06 5.29586585 0.219210847 MALHLPWFHPR ddPTM_HeLa_A485_30min_R1 1 MALHLPWFHPR 11 0 Q9H5V8-3;Q9H5V8-2;Q9H5V8 Q9H5V8-3 CDCP1 CUB domain-containing protein 1 0 0 118.18 0.00084469 5115400 6787.2 4254.5 3314.1 2948.6 3062.2 4366.5 3921.4 4827.9 2930.7 5256.6 FALSE FALSE TRUE 8296.989224 4752.026766 4540.123501 3109.674552 2757.316616 4595.123188 3083.560855 3643.849955 3518.864608 3946.226361 2.10251224 1.204195181 1.150497485 0.788012209 0.698722365 1.164434771 0.781394825 0.923375808 0.89170369 1 11.946258 -3.845772263 1.205064369 0.894463584 3.958867916 0.873564958 0.135788106 1.149710726 0.723460107 0.039974317 5.599660439 0.000142636 3.845772263 3.064404332 MALHLPWFHPR ddPTM_HeLa_A486_30min_R1 1 MALHLPWFHPR 11 0 Q9H5V8-3;Q9H5V8-2;Q9H5V8 Q9H5V8-3 CDCP1 CUB domain-containing protein 1 0 0 113.22 0.0012059 2863300 5628.1 2522.2 2294.2 1408.7 2881.5 2307 2704.7 2353.9 2427.2 5813.9 FALSE FALSE TRUE 5233.599254 2322.331686 3182.575681 3279.524792 2520.075401 2022.385796 2027.955453 1817.968355 2637.59165 4358.061598 1.200900707 0.532881795 0.730273221 0.752519146 0.578256031 0.464056267 0.465334279 0.417150679 0.605221287 1 12.08947087 -4.257819113 24.74622584 0.595145861 1.200900972 0.523079211 0.166407349 240.6625135 1644959.89 0.04127675 0.29683091 5.52E-05 4.257819113 0.605755112 MALIQMGSVEEAVQALIDLHNHDLGENHHLR ddPTM_HeLa_A485_30min_R1 2 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 31 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 ; ; 185.7 4.77E-34 14320000 10654.9 11245.4 9387.3 8572.2 10296.1 9698.3 11501.6 12463 7260.5 13272.8 FALSE FALSE TRUE 13025.04575 12560.45171 12860.05291 9040.47758 9270.984132 10206.08799 9044.189201 9406.429709 8717.615753 9964.135228 1.307192792 1.260566163 1.290634121 0.907301775 0.930435399 1.024282365 0.907674273 0.944028708 0.874899382 1 13.28252889 -5.258785485 24.99671906 0.94051193 1.283574562 0.931760236 0.042770907 52.71643455 496527.272 0.01164621 0.019041324 5.51E-06 5.258785485 0.343062632 MALIQMGSVEEAVQALIDLHNHDLGENHHLR ddPTM_HeLa_A486_30min_R1 1 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 31 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 150.91 8.77E-20 6583300 1574.9 1654.4 1321.5 674.81 2167 1942.4 1253.9 1438.4 2187.7 2050.6 FALSE FALSE TRUE 1464.507643 1523.299319 1833.220191 1570.991783 1895.194654 1702.766437 940.1609576 1110.90772 2377.331597 1537.116413 0.952762999 0.99101103 1.192635883 1.022038259 1.232954536 1.107766739 0.611639398 0.722721917 1.546617795 1 10.58601072 MALLATVLGRF ddPTM_HeLa_A486_30min_R1 2 MALLATVLGRF 11 1 F8VPD4;P27708;H7C2E4 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 0 ; ; 117.89 0.023501 4137400 6388.1 5412 5266.8 2487.9 7317.5 4664.2 7425 5419.6 3978.4 6838.6 FALSE FALSE TRUE 5940.327178 4983.13341 7306.24601 5791.956932 6399.670917 4088.778426 5567.186466 4185.675389 4323.250915 5126.170048 1.158823668 0.972096782 1.425283582 1.129879984 1.248431257 0.797628324 1.086032343 0.816530733 0.843368611 1 12.32366562 -6.255436482 24.98513659 0.908327692 1.185044794 0.524060667 0.132549453 402.8016059 1676534.069 0.043690294 0.042601435 5.55E-07 6.255436482 0.276717101 MALLQEFASRPLGAAPQAEHQGLPVPGS(ph)PGGQK ddPTM_HeLa_A485_30min_R1 1 MALLQEFASRPLGAAPQAEHQGLPVPGSPGGQK 33 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MALLQEFASRPLGAAPQAEHQGLPVPGS(1)PGGQK 94.406 0.00010198 710110000 48344 57717 39026 63295 62579 58389 80692 72004 43095 85793 TRUE FALSE FALSE 59097.95602 64466.50108 53463.34141 66752.64558 56348.41503 61446.15775 63451.49501 54344.9061 51743.77121 64406.384 0.917579164 1.000933402 0.830093821 1.036429022 0.874888661 0.95403831 0.985174001 0.843781357 0.803395067 1 15.97491608 -7.270684798 24.80473903 0.867691157 0.942068937 0.114243719 0.073642941 1056.55241 2834628.884 0.036837395 0.018098768 5.36E-08 7.270684798 0.07437778 MALLQEFASRPLGAAPQAEHQGLPVPGS(ph)PGGQK ddPTM_HeLa_A486_30min_R1 2 MALLQEFASRPLGAAPQAEHQGLPVPGSPGGQK 33 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MALLQEFASRPLGAAPQAEHQGLPVPGS(1)PGGQK;MALLQEFASRPLGAAPQAEHQGLPVPGS(1)PGGQK ; 188.69 2.51E-21 1686570000 916920 869860 485810 356760 835300 933960 1013350 1059580 659370 1231890 TRUE FALSE FALSE 852648.643 800929.1256 673928.6424 830555.3097 730528.8851 818737.511 759799.1119 818336.7645 716524.7225 923416.7257 0.923362789 0.867353929 0.729820701 0.899437152 0.791115067 0.886639248 0.822812811 0.886205265 0.775949474 1 19.81662234 -10.72137406 3.183426801 1.020482443 0.842102161 0.393406169 0.058661696 39783057.99 35454083.28 6337453.985 0.013495682 1.90E-11 10.72137406 -0.178380281 MALPPQEDAT(ph)ASPPR ddPTM_HeLa_A485_30min_R1 1 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.611)AS(0.389)PPR 85.457 0.0044781 804890000 343870 397090 370400 463780 443140 434550 460780 351800 381100 482460 TRUE FALSE FALSE 420362.6952 443526.2213 507426.3736 489115.127 399019.4256 457302.3661 362330.5888 265520.4984 457583.2743 362191.601 1.160608623 1.224562414 1.400988792 1.350431997 1.101680504 1.262597931 1.000383741 0.733094024 1.26337351 1 18.46639357 -6.782190501 6.105291759 0.974589117 1.254160277 0.419001344 0.143696968 0.153165245 18.94337557 0.058916466 0.040955248 1.65E-07 6.782190501 0.279571161 MALPPQEDAT(ph)ASPPR ddPTM_HeLa_A486_30min_R1 1 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.5)AS(0.5)PPR 58.487 0.0073145 0 75087 128220 208090 22383 195710 76618 89337 105490 122070 65196 TRUE FALSE FALSE 69823.78905 118059.3802 288668.0208 52108.75517 171162.2269 67165.65015 66983.93769 81472.22983 132651.1259 48870.49725 1.428751353 2.41575975 5.906795247 1.066262021 3.502363113 1.374359868 1.370641624 1.667104581 2.714339599 1 15.57667616 -6.270524363 24.66745193 1.651067663 2.908256198 0.184664631 1.29917395 996.2922149 2705113.794 0.454452166 0.406514149 5.36E-07 6.270524363 1.257188534 MALPPQEDAT(ph)ASPPRQK ddPTM_HeLa_A485_30min_R1 1 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.667)AS(0.333)PPRQK 97.488 0.00066188 352370000 88310 157010 104740 78464 193420 204170 236950 394690 112680 121250 TRUE FALSE FALSE 107954.2548 175370.9537 143487.6846 82750.28964 174162.4257 214860.0255 186323.6968 297891.6587 135293.8424 91024.60644 1.185989801 1.926632375 1.576361494 0.909098022 1.913355437 2.360460912 2.046959653 3.272649784 1.486343613 1 16.47396898 -5.989235847 23.98631582 2.171814924 1.444980504 0.179565091 0.609059142 189.3104021 421845.092 0.181399122 0.205454648 1.03E-06 5.989235847 -0.72683442 MALPPQEDAT(ph)ASPPRQK ddPTM_HeLa_A486_30min_R1 2 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.687)AS(0.313)PPRQK;MALPPQEDAT(0.605)AS(0.395)PPRQK ; 104.84 7.91E-05 0 582250 489260 354512 235785 729990 537950 745340 735430 394495 662220 TRUE FALSE FALSE 541437.2817 450489.2557 491788.5406 548919.3959 638427.8473 471583.1985 558848.0486 567988.6433 428690.1442 496395.8017 1.090737029 0.907520278 0.990718574 1.105809908 1.286126605 0.950014478 1.125811392 1.144225317 0.863605499 1 18.92113139 -5.248732615 21.65237974 1.080539886 0.987444704 0.064504903 0.116902455 294.7633437 502268.7577 0.031329515 0.053606048 5.64E-06 5.248732615 -0.093095182 MALPPQEDATAS(ph)PPR ddPTM_HeLa_A485_30min_R1 14 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.06)AS(0.94)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.004)AS(0.996)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.036)AS(0.964)PPR;MALPPQEDAT(0.017)AS(0.983)PPR;MALPPQEDAT(0.008)AS(0.992)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.005)AS(0.995)PPR;MALPPQEDAT(0.001)AS(0.999)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.036)AS(0.964)PPR ;;;;;;;;;;;;; 265.6 1.08E-50 12457850000 3637051 4624331 4829932 4327432 5377988 4264782 5060957 4714168 4538313 5498091 TRUE FALSE FALSE 4446100.447 5165106.284 6616724.837 4563828.653 4842536.631 4488079.391 3979642.193 3558010.906 5449110.791 4127518.099 1.077184967 1.251383074 1.603075911 1.105707726 1.173232077 1.087355472 0.964173166 0.862021879 1.320190648 1 21.97684311 -5.850389576 1.757481242 1.034947484 1.297221106 0.27030982 0.169966432 0.449891063 2.864417858 0.062740677 0.077598024 1.41E-06 5.850389576 0.262273622 MALPPQEDATAS(ph)PPR ddPTM_HeLa_A486_30min_R1 21 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.002)AS(0.998)PPR;MALPPQEDAT(0.179)AS(0.821)PPR;MALPPQEDAT(0.012)AS(0.988)PPR;MALPPQEDAT(0.001)AS(0.999)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.248)AS(0.752)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.178)AS(0.822)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.008)AS(0.992)PPR;MALPPQEDAT(0.393)AS(0.607)PPR;MALPPQEDAT(0.003)AS(0.997)PPR;MALPPQEDAT(0.005)AS(0.995)PPR;MALPPQEDAT(0.004)AS(0.996)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.015)AS(0.985)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.057)AS(0.943)PPR;MALPPQEDAT(0.01)AS(0.99)PPR ;;;;;;;;;;;;;;;;;;;; 281.49 1.83E-58 15417640000 5327306 6201349 5055055 1734429 6463298 5520174 5879585 6019173 5187915 6047200 TRUE FALSE FALSE 4953889.36 5709931.52 7012507.675 4037838.365 5652610.897 4839151.057 4408450.645 4648738.706 5637607.649 4532941.759 1.09286411 1.259652522 1.547010319 0.890776582 1.247007175 1.067552003 0.972536353 1.025545651 1.243697349 1 22.11201619 -5.273037177 24.99850884 1.068916114 1.295823354 0.351285818 0.146804525 823.7605938 1775576.102 0.041051345 0.061469483 5.33E-06 5.273037177 0.22690724 MALPPQEDATAS(ph)PPRQK ddPTM_HeLa_A485_30min_R1 8 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.203)AS(0.797)PPRQK;MALPPQEDAT(0.444)AS(0.556)PPRQK;MALPPQEDAT(0.021)AS(0.979)PPRQK;MALPPQEDAT(0.285)AS(0.715)PPRQK;MALPPQEDAT(0.001)AS(0.999)PPRQK;MALPPQEDAT(0.001)AS(0.999)PPRQK;MALPPQEDAT(0.037)AS(0.963)PPRQK;MALPPQEDAT(0.077)AS(0.923)PPRQK ;;;;;;; 190.64 2.79E-18 9004640000 2089167 4042350 2662200 1885311 4690610 4707650 6008880 9266790 2889870 3081650 TRUE FALSE FALSE 2553894.992 4515067.669 3647058.563 1988300.766 4223596.399 4954135.275 4725033.7 6994095.223 3469840.402 2313451.369 1.103932863 1.951658777 1.576457847 0.859452156 1.825668979 2.14144777 2.04241756 3.023229845 1.499854481 1 21.14161534 -5.990419441 24.31631838 2.064089689 1.417983776 0.173822434 0.55655733 219.5345298 557192.3863 0.16775661 0.189956159 1.02E-06 5.990419441 -0.646105913 MALPPQEDATAS(ph)PPRQK ddPTM_HeLa_A486_30min_R1 7 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.397)AS(0.603)PPRQK;MALPPQEDAT(0.2)AS(0.8)PPRQK;MALPPQEDAT(0.073)AS(0.927)PPRQK;MALPPQEDAT(0.017)AS(0.983)PPRQK;MALPPQEDAT(0.17)AS(0.83)PPRQK;MALPPQEDAT(0.072)AS(0.928)PPRQK;MALPPQEDAT(0.004)AS(0.996)PPRQK ;;;;;; 187.59 4.14E-18 4383310000 2926150 2396520 2080650 1347617 4230360 2431380 3656130 4042800 1773476 3464010 TRUE FALSE FALSE 2721041.996 2206611.027 2886333.402 3137320.481 3699748.802 2131421.056 2741327.603 3122342.694 1927202.328 2596599.349 1.04792524 0.849808049 1.111582117 1.208242035 1.424843923 0.820850955 1.055737615 1.202473803 0.742202423 1 21.308192 -7.759148104 24.99999865 0.871101221 1.087848528 0.200751298 0.174805204 97.01378155 1058611.024 0.13627032 0.045872204 1.74E-08 7.759148104 0.216747307 MALSECRVMT(ph)YR ddPTM_HeLa_A485_30min_R1 3 MALSECRVMTYR 12 1 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 MALSECRVMT(0.92)Y(0.08)R;MALSECRVMT(0.918)Y(0.082)R;MALSECRVMT(0.977)Y(0.023)R ;; 43.897 0.032386 157268000 25911.3 30121 20758.6 35113.1 42077.7 30168.6 54477.6 45122.7 24001.6 49853.4 TRUE FALSE FALSE 31675.17929 33643.38893 28438.06998 37031.23974 37888.29644 31748.18125 42838.01572 34056.28708 28818.50096 37425.86486 0.846344618 0.898934174 0.75985071 0.989455818 1.012355936 0.848295193 1.144609907 0.909966602 0.770015631 1 15.19174804 -5.277145911 24.69555679 0.955805207 0.841432261 0.226575061 0.100047114 1051.436172 1653182.55 0.028355114 0.042229226 5.28E-06 5.277145911 -0.114372946 MALSECRVMT(ph)YR ddPTM_HeLa_A486_30min_R1 1 MALSECRVMTYR 12 1 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 MALSECRVMT(0.993)Y(0.007)R 55.776 0.01838 34761000 11376 6979.6 6256.2 7187.1 10566 12582 13189 14407 8497.7 15860 TRUE FALSE FALSE 10578.60115 6426.511077 8678.768187 16731.93202 9240.713756 11029.76076 9888.972701 11126.8406 9234.287478 11888.55277 0.889814038 0.540562943 0.730010486 1.407398557 0.777278272 0.927763116 0.831806267 0.935928941 0.776737729 1 13.53728548 -5.031669867 24.99803392 0.945420162 0.695212704 0.241797924 0.186607785 831.7170229 656500.3827 0.049609087 0.086038551 9.30E-06 5.031669867 -0.250207458 MALTLLDYLFHR ddPTM_HeLa_A485_30min_R1 2 MALTLLDYLFHR 12 0 Q8N9N5-3;Q8N9N5-6;Q8N9N5-2;Q8N9N5-4;Q8N9N5-5;Q8N9N5-7;Q8N9N5 Q8N9N5-3 BANP Protein BANP 0 0 ; ; 195.68 2.01E-14 35570000 20168.5 25035.2 23919.3 16447.3 32169 20296.4 30791 31112 15890.7 24188.8 FALSE FALSE TRUE 24654.91324 27962.84886 32768.04444 17345.77435 28966.14141 21359.08812 24212.25131 23481.73322 19079.81773 18158.97732 1.357725868 1.539891172 1.804509354 0.955217579 1.59514167 1.176227479 1.333348838 1.293119805 1.050709927 1 14.14839533 -6.930795286 0.322757409 0.967855575 1.571182029 0.342357142 0.212849228 1.811727879 0.539711492 0.303352611 0.391148822 1.17E-07 6.930795286 0.603326454 MALTLLDYLFHR ddPTM_HeLa_A486_30min_R1 2 MALTLLDYLFHR 12 0 Q8N9N5-3;Q8N9N5-6;Q8N9N5-2;Q8N9N5-4;Q8N9N5-5;Q8N9N5-7;Q8N9N5 Q8N9N5-3 BANP Protein BANP 0 0 ; ; 178.81 1.52E-09 18572600 14379.3 15306.2 12810 5942.6 15040.6 13955.2 16699.8 16481.2 14242.4 15861.3 FALSE FALSE TRUE 13371.38532 14093.28097 17770.37506 13834.67312 13154.0677 12233.54931 12521.33341 12728.79054 15476.9427 11889.52724 1.124635577 1.185352511 1.494624194 1.163601617 1.106357506 1.028934882 1.053139722 1.07058845 1.301729025 1 13.53740373 -5.514234316 23.21781263 1.095675879 1.271451248 0.307953433 0.117214731 194.9094159 523501.673 0.034604951 0.047152885 3.06E-06 5.514234316 0.175775369 MALVS(ph)ADSR ddPTM_HeLa_A485_30min_R1 1 MALVSADSR 9 0 Q96ES7;H3BPL5 Q96ES7 CCDC101 SAGA-associated factor 29 homolog 1 0 MALVS(1)ADSR 60.788 0.030151 226550000 144040 244360 262940 166950 250170 231980 248620 287080 234670 220360 TRUE FALSE FALSE 176081.2011 272935.7764 360212.4478 176070.0558 225262.1964 244126.1141 195500.306 216673.1799 281766.1165 165428.3074 1.064395833 1.649873474 2.177453505 1.06432846 1.361690752 1.475721525 1.181782665 1.309770881 1.703252127 1 17.3358466 -5.318027021 24.99999398 1.317442004 1.632514114 0.188808372 0.312918181 481.9006945 212898.9659 0.088134645 0.130724853 4.81E-06 5.318027021 0.31507211 MANKT(ph)S(ph)DSLLS(ph)MK ddPTM_HeLa_A486_30min_R1 1 MANKTSDSLLSMK 13 1 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 3 0 MANKT(0.953)S(0.958)DS(0.089)LLS(0.999)MK 46.249 0.021967 690830000 472900 572310 334220 29815 458910 456250 358810 366600 485290 185490 TRUE FALSE FALSE 439752.1521 526958.0713 463638.9347 69410.82677 401349.2286 399962.5138 269031.9429 283133.1828 527355.3279 139042.0967 3.162726704 3.789917471 3.334522032 0.499207279 2.886530326 2.876556981 1.934895613 2.036312668 3.792774567 1 17.08516222 -5.033413499 24.99726041 2.217186719 3.497797564 0.297357316 0.900459558 743.4477431 556186.6467 0.237693722 0.412059592 9.26E-06 5.033413499 1.280610846 MANNDAVLKR ddPTM_HeLa_A485_30min_R1 1 MANNDAVLKR 10 1 D6R937;A0A5F9ZHC5;Q12904;Q12904-2 D6R937 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 0 77.282 0.025235 156840000 183970 619650 931040 20970 779540 173440 249320 241800 498760 92631 FALSE FALSE TRUE 224893.4918 692112.6773 1275470.44 22115.538 701926.2605 182521.0502 196050.7452 182498.1709 598856.5571 69539.79645 3.234025742 9.952756732 18.34159007 0.318027074 10.09387856 2.62469923 2.819259694 2.62437022 8.611709952 1 16.08555122 -5.287724885 24.99730302 4.226585359 10.45379167 0.305158684 4.483852323 918.3572719 873348.3173 1.252330284 1.858151946 5.16E-06 5.287724885 6.227206311 MANNDAVLKR ddPTM_HeLa_A486_30min_R1 2 MANNDAVLKR 10 1 D6R937;A0A5F9ZHC5;Q12904;Q12904-2 D6R937 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 0 0 ; ; 87.323 0.014129 220670000 424530 697360 1305940 4209.96 1123260 270490 156516 424070 708180 66950 FALSE FALSE TRUE 394772.6393 642098.6539 1811634.942 9800.99964 982370.2568 237119.6939 117354.0413 327518.5184 769565.6126 50185.28423 7.866302749 12.79456047 36.09892761 0.195296286 19.57486685 4.724884946 2.338415397 6.526186379 15.33448748 1 15.61497677 -6.272219786 24.00956713 6.102282033 15.48214704 0.199949411 9.317856858 733.1284037 1632779.952 3.249867888 2.897028567 5.34E-07 6.272219786 9.379865004 MANSS(ph)PVLSK ddPTM_HeLa_A485_30min_R1 4 MANSSPVLSK 10 0 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 0 MANS(0.032)S(0.968)PVLSK;MANS(0.002)S(0.998)PVLSK;MANS(0.008)S(0.992)PVLSK;MANS(0.001)S(0.999)PVLSK ;;; 238.07 8.00E-21 2268410000 4808640 4530460 4028140 5633500 6265300 4661300 6174700 5622000 4754270 7278100 TRUE FALSE FALSE 5878305.378 5060257.887 5518316.611 5941243.84 5641504.733 4905358.46 4855424.902 4243195.685 5708408.38 5463803.614 1.075863225 0.926141978 1.009977115 1.087382392 1.032523336 0.897791869 0.888652896 0.776601061 1.044768221 1 22.3814742 -6.261877768 24.98242735 0.905543502 1.023286982 0.297038055 0.078644252 45.65321559 2601582.548 0.026450689 0.024752036 5.47E-07 6.261877768 0.11774348 MANSS(ph)PVLSK ddPTM_HeLa_A486_30min_R1 5 MANSSPVLSK 10 0 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 0 MANS(0.001)S(0.999)PVLSK;MANS(0.102)S(0.898)PVLSK;MANS(0.019)S(0.981)PVLSK;MANS(0.012)S(0.988)PVLSK;MANS(0.005)S(0.995)PVLSK ;;;; 238.07 8.00E-21 2416600000 6079420 6621380 4088970 2244210 6461150 6365910 7417970 7302010 5300710 6917590 TRUE FALSE FALSE 5653284.052 6096677.734 5672328.69 5224634.296 5650732.319 5580548.748 5561915.447 5639501.725 5760179.811 5185380.438 1.090235156 1.175743575 1.093907912 1.007570102 1.089743055 1.076208162 1.072614732 1.087577236 1.110849991 1 22.30601841 -14 0.179001455 0.664288201 1.106001992 0.307910376 0.039269861 185.8945563 1.785687573 22.48622778 0.134761472 1.00E-14 14 0.44171379 MANSS(ph)PVLSKVPGYGLQVR ddPTM_HeLa_A485_30min_R1 2 MANSSPVLSKVPGYGLQVR 19 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 0 MANS(0.139)S(0.861)PVLSKVPGYGLQVR;MANS(0.137)S(0.863)PVLSKVPGYGLQVR ; 129.29 2.05E-06 599050000 248890 640080 340620 203704 498660 748530 809900 1619340 319120 273480 TRUE FALSE FALSE 304254.7218 714931.788 466629.5124 214831.8337 449011.6595 787721.8734 636858.2487 1222194.326 383164.4569 205306.469 1.481953897 3.48226625 2.272843689 1.046395833 2.18703123 3.836809805 3.101988222 5.953023944 1.86630484 1 17.64741956 -6.247332803 21.21464538 3.458086792 2.122942273 0.111442676 1.36070083 184.3131615 277183.7284 0.435165043 0.431922809 5.66E-07 6.247332803 -1.335144518 MAPALSGANLTS(ph)PR ddPTM_HeLa_A485_30min_R1 12 MAPALSGANLTSPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MAPALSGANLT(0.018)S(0.982)PR;MAPALS(0.001)GANLT(0.237)S(0.763)PR;MAPALS(0.013)GANLT(0.245)S(0.742)PR;MAPALSGANLT(0.057)S(0.943)PR;MAPALS(0.001)GANLT(0.282)S(0.716)PR;MAPALSGANLT(0.039)S(0.961)PR;MAPALSGANLT(0.002)S(0.998)PR;MAPALSGANLT(0.038)S(0.962)PR;MAPALSGANLT(0.022)S(0.978)PR;MAPALSGANLT(0.141)S(0.859)PR;MAPALSGANLT(0.038)S(0.962)PR;MAPALS(0.003)GANLT(0.147)S(0.849)PR ;;;;;;;;;;; 163.84 6.87E-12 7384920000 3835210 4903300 4866910 4034980 5812120 4462960 5179600 5143210 4268040 5248100 TRUE FALSE FALSE 4688339.233 5476698.282 6667382.538 4255400.74 5233444.925 4696633.685 4072936.147 3881829.683 5124596.479 3939845.254 1.189980553 1.390079541 1.692295536 1.080093371 1.328337685 1.192085826 1.033780741 0.985274657 1.300710091 1 21.90970754 -6.036538576 1.161541752 1.082544281 1.39115713 0.343668831 0.167929058 0.532957216 1.51084951 0.079201147 0.088105165 9.19E-07 6.036538576 0.308612849 MAPALSGANLTS(ph)PR ddPTM_HeLa_A486_30min_R1 7 MAPALSGANLTSPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MAPALS(0.003)GANLT(0.316)S(0.68)PR;MAPALSGANLT(0.032)S(0.968)PR;MAPALSGANLTS(1)PR;MAPALSGANLT(0.004)S(0.996)PR;MAPALSGANLT(0.05)S(0.95)PR;MAPALSGANLT(0.078)S(0.922)PR;MAPALSGANLT(0.059)S(0.941)PR ;;;;;; 194.19 4.30E-18 5785490000 3093990 3410510 2820850 1125279 3650850 3168870 3799030 3602950 2761100 3370780 TRUE FALSE FALSE 2877117.278 3140248.767 3913158.665 2619706.38 3192926.35 2777927.038 2848472.512 2782636.937 3000434.371 2526714.748 1.138679101 1.24281887 1.548714064 1.036803376 1.263667121 1.099422497 1.127342338 1.101286538 1.18748441 1 21.26883137 -5.30925001 24.99956027 1.126655726 1.303346776 0.358867098 0.117880197 445.5947948 232994.8413 0.032671973 0.048460495 4.91E-06 5.30925001 0.176691051 MAPPVDDLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 MAPPVDDLSPK 11 0 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 MAPPVDDLS(1)PK;MAPPVDDLS(1)PK ; 172.33 2.62E-08 1320190000 682730 707460 467890 1185490 850730 698510 1073080 1135090 556970 1562300 TRUE FALSE FALSE 834600.9331 790191.2929 640981.9815 1250250.317 766028.3341 735082.9035 843807.6917 856707.3977 668748.7702 1172847.362 0.711602345 0.673737537 0.546517818 1.065995762 0.653135573 0.626750699 0.719452266 0.730450889 0.570192501 1 20.16158384 -11.22126532 2.33479034 1.975242005 0.703221962 0.305535027 0.135705109 14021009.75 2586692.151 72246783.78 0.03335462 6.01E-12 11.22126532 -1.272020043 MAPPVDDLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 MAPPVDDLSPK 11 0 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 MAPPVDDLS(1)PK;MAPPVDDLS(1)PK ; 180.18 2.05E-10 1192350000 914530 847400 377030 664130 640460 817800 1237960 1050020 684030 1745470 TRUE FALSE FALSE 850426.1696 780248.9378 523026.1132 1546128.203 560127.5347 716908.1508 928209.3142 810953.3678 743322.2712 1308392.951 0.649977646 0.596341441 0.399746967 1.181700194 0.428103449 0.547930307 0.709427022 0.619808726 0.568118523 1 20.31936446 -10.18844925 4.676383392 1.00005111 0.634897674 0.224937443 0.204100899 0.000120611 2.09E-05 0.191415228 0.046417591 6.48E-11 10.18844925 -0.365153436 MAPT(ph)PIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_HeLa_A485_30min_R1 2 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 2 0 MAPT(0.995)PIPT(0.765)RS(0.104)PS(0.023)DS(0.019)S(0.021)T(0.023)AS(0.027)T(0.024)PVAEQIER;MAPT(0.995)PIPT(0.351)RS(0.31)PS(0.31)DS(0.006)S(0.006)T(0.007)AS(0.008)T(0.007)PVAEQIER ; 75.248 0.0065079 466930000 76277 126260 115963 91170 160550 121902 152750 160064 109187 129221 TRUE FALSE FALSE 93244.5555 141025.0087 158862.5393 96150.38625 144565.0783 128284.6002 120113.7146 120808.053 131099.8294 97008.58284 0.961199028 1.453737438 1.637613237 0.991153395 1.490229772 1.322404642 1.238176161 1.245333655 1.351425055 1 16.56582477 -12.26429025 0.39728846 1.28E-10 1.314888566 0.165254794 0.198998989 276.0605109 7.477234454 231.2907679 0.124236324 5.44E-13 12.26429025 1.314888566 MAPT(ph)PIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_HeLa_A486_30min_R1 2 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 2 0 MAPT(1)PIPT(0.628)RS(0.112)PS(0.064)DS(0.052)S(0.058)T(0.064)AS(0.012)T(0.011)PVAEQIER;MAPT(0.994)PIPT(0.505)RS(0.337)PS(0.028)DS(0.053)S(0.021)T(0.02)AS(0.023)T(0.018)PVAEQIER ; 105.48 0.00041605 489670000 88858 101964 115887 44578 155330 96228 123813 120193 83802 103508 TRUE FALSE FALSE 82629.51306 93884.00129 160761.55 103779.8368 135847.063 84356.36773 92833.67784 92827.67769 91066.02483 77588.92308 1.06496533 1.2100181 2.071965219 1.33755996 1.750856406 1.087221789 1.196481072 1.196403739 1.173698786 1 16.24356308 -6.283711754 24.64260337 1.147143778 1.495868815 0.304747392 0.268358671 921.9436162 1020053.312 0.09682737 0.085461014 5.20E-07 6.283711754 0.348725037 MAPT(ph)PIPTRS(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_A486_30min_R1 1 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 2 0 MAPT(0.998)PIPT(0.231)RS(0.72)PS(0.018)DS(0.013)S(0.004)T(0.005)AS(0.005)T(0.006)PVAEQIER 62.487 0.016599 138720000 44733 53635 58048 20417 78771 41129 54317 69520 44705 59503 TRUE FALSE FALSE 41597.4477 49384.76726 80525.74018 47531.80782 68890.80667 36054.92215 40726.31209 53691.81361 48580.06539 44603.0615 0.932614182 1.107205775 1.805385941 1.06566245 1.544530899 0.808350838 0.913083334 1.203769692 1.08916437 1 15.44485512 -6.267075841 24.90445272 1.009997368 1.296913994 0.245757913 0.252191891 696.3801794 3076915.497 0.089137879 0.080803759 5.41E-07 6.267075841 0.286916625 MAPTPIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_HeLa_A485_30min_R1 4 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 MAPTPIPT(0.574)RS(0.307)PS(0.103)DS(0.015)STASTPVAEQIER;MAPTPIPT(0.632)RS(0.278)PS(0.063)DS(0.021)S(0.005)T(0.001)ASTPVAEQIER;MAPTPIPT(0.509)RS(0.45)PS(0.039)DS(0.001)S(0.001)TASTPVAEQIER;MAPTPIPT(0.491)RS(0.491)PS(0.013)DS(0.003)S(0.001)TASTPVAEQIER ;;; 189.31 3.87E-19 6481200000 867140 1410580 1474240 919440 1855580 1364320 1668470 1935380 1354280 1433280 TRUE FALSE FALSE 1060032.301 1575535.061 2019622.724 969666.6791 1670831.94 1435753.686 1311987.754 1460725.02 1626071.574 1075989.674 0.985169586 1.464265968 1.876990806 0.90118586 1.552832691 1.33435638 1.219331176 1.357564163 1.511233438 1 20.0372328 -10.11912325 4.178277614 0.999925931 1.362215213 0.137978331 0.266434755 174581834 292115171.6 170709.7693 0.064271177 7.60E-11 10.11912325 0.362289282 MAPTPIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_HeLa_A486_30min_R1 4 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 MAPTPIPT(0.552)RS(0.432)PS(0.016)DSSTASTPVAEQIER;MAPT(0.001)PIPT(0.681)RS(0.306)PS(0.011)DSSTASTPVAEQIER;MAPTPIPT(0.547)RS(0.435)PS(0.014)DS(0.001)S(0.001)T(0.001)ASTPVAEQIER;MAPT(0.003)PIPT(0.742)RS(0.255)PS(0.001)DSSTASTPVAEQIER ;;; 273.73 8.35E-77 7982930000 802173 868231 880801 328382 1123880 837990 934310 1000270 784869 840300 TRUE FALSE FALSE 745944.8151 799429.2135 1221870.736 764489.8915 982912.4906 734607.3139 700535.7559 772530.3567 852902.0769 629883.4106 1.184258551 1.269170135 1.93983635 1.213700629 1.560467341 1.166259186 1.112167338 1.226465634 1.354063407 1 19.26472529 -6.276920174 24.03033349 1.182218695 1.440278116 0.262026882 0.219093397 726.3332908 1127459.297 0.077287406 0.068435336 5.29E-07 6.276920174 0.258059422 MAPTPIPTRS(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_A485_30min_R1 11 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 MAPTPIPT(0.115)RS(0.851)PS(0.032)DS(0.001)STASTPVAEQIER;MAPTPIPT(0.138)RS(0.851)PS(0.01)DS(0.001)STASTPVAEQIER;MAPTPIPT(0.148)RS(0.844)PS(0.007)DSS(0.001)TASTPVAEQIER;MAPTPIPT(0.165)RS(0.833)PS(0.002)DSSTASTPVAEQIER;MAPTPIPT(0.052)RS(0.896)PS(0.052)DSSTASTPVAEQIER;MAPTPIPT(0.021)RS(0.94)PS(0.036)DS(0.003)STASTPVAEQIER;MAPTPIPT(0.25)RS(0.61)PS(0.139)DSSTASTPVAEQIER;MAPTPIPT(0.408)RS(0.573)PS(0.018)DSSTASTPVAEQIER;MAPT(0.006)PIPT(0.192)RS(0.771)PS(0.03)DSSTASTPVAEQIER;MAPTPIPT(0.043)RS(0.928)PS(0.027)DS(0.002)STASTPVAEQIER;MAPTPIPT(0.2)RS(0.798)PS(0.002)DSSTASTPVAEQIER ;;;;;;;;;; 326.1 2.12E-110 46097570000 2178766 3428275 3421641 2350097 4035611 3102323 4387285 4944539 2974500 3495939 TRUE FALSE FALSE 2663424.98 3829181.939 4687448.392 2478476.848 3633811.399 3264755.835 3449905.719 3731883.058 3571454.866 2624465.745 1.014844635 1.459032927 1.786058134 0.944373861 1.384590904 1.243969688 1.314517336 1.421959141 1.360831199 1 21.32359234 -10.14780324 5.441686732 0.999992318 1.333677514 0.161260898 0.222061184 2.03E-05 3.18E-06 0.211023064 0.051179432 7.12E-11 10.14780324 0.333685196 MAPTPIPTRS(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_A486_30min_R1 8 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 MAPT(0.002)PIPT(0.199)RS(0.732)PS(0.067)DSSTASTPVAEQIER;MAPTPIPT(0.283)RS(0.684)PS(0.032)DS(0.001)S(0.001)TASTPVAEQIER;MAPT(0.008)PIPT(0.162)RS(0.825)PS(0.004)DS(0.001)STASTPVAEQIER;MAPTPIPT(0.465)RS(0.5)PS(0.034)DSSTASTPVAEQIER;MAPT(0.001)PIPT(0.184)RS(0.79)PS(0.025)DSSTASTPVAEQIER;MAPTPIPT(0.05)RS(0.942)PS(0.007)DS(0.001)STASTPVAEQIER;MAPTPIPT(0.097)RS(0.883)PS(0.018)DS(0.002)STASTPVAEQIER;MAPT(0.015)PIPT(0.278)RS(0.681)PS(0.026)DSSTASTPVAEQIER ;;;;;;; 285.92 7.69E-78 33059570000 1756348 2135133 2131303 718225 2955210 1872370 2447790 2472620 1981552 2182540 TRUE FALSE FALSE 1633237.075 1965937.285 2956600.6 1672064.097 2584540.006 1641376.026 1835327.052 1909658.403 2153314.523 1636017.778 0.998300322 1.201660099 1.807193442 1.022032963 1.579775012 1.003275177 1.121825861 1.167260178 1.316192618 1 20.64175699 -6.288333262 24.98921695 1.132171737 1.325431861 0.146293072 0.240926489 1591.691007 1478959.324 0.083831317 0.073950211 5.15E-07 6.288333262 0.193260124 MAPVPLDDSNRPAS(ph)LTK ddPTM_HeLa_A485_30min_R1 3 MAPVPLDDSNRPASLTK 17 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 MAPVPLDDS(0.06)NRPAS(0.897)LT(0.043)K;MAPVPLDDSNRPAS(0.999)LT(0.001)K;MAPVPLDDS(0.005)NRPAS(0.994)LT(0.001)K ;; 157.97 4.78E-09 548810000 438648 378651 357475 518772 549490 491450 577870 544500 415794 723540 TRUE FALSE FALSE 536223.7343 422930.9406 489719.8783 547111.2008 494780.8462 517181.5621 454403.3537 410960.5213 499240.0419 543174.7938 0.987202905 0.7786277 0.901588004 1.007247035 0.910905388 0.952145733 0.836569294 0.756589823 0.919114892 1 19.05105701 -6.768510911 24.98754832 0.857784317 0.918705384 0.04316116 0.082645353 395.6938077 1398184.388 0.033915948 0.023416889 1.70E-07 6.768510911 0.060921067 MAPVPLDDSNRPAS(ph)LTK ddPTM_HeLa_A486_30min_R1 2 MAPVPLDDSNRPASLTK 17 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 MAPVPLDDSNRPAS(0.999)LT(0.001)K;MAPVPLDDSNRPAS(0.994)LT(0.005)K ; 168.81 2.26E-12 584910000 476430 471580 295600 188765 440900 535320 618770 528900 389380 667660 TRUE FALSE FALSE 443034.7173 434210.2833 410064.2364 439454.4597 385598.2108 469277.6611 463947.2013 408481.0158 423131.7719 500473.5903 0.885230961 0.867598794 0.819352398 0.878077222 0.770466651 0.937667182 0.927016351 0.816188953 0.845462738 1 18.93293442 -6.289714008 24.91384785 0.895138177 0.845955881 0.216040045 0.056542612 1400.801196 1234293.805 0.020063147 0.01769787 5.13E-07 6.289714008 -0.049182296 MAS(ph)KDR ddPTM_HeLa_A485_30min_R1 3 MASKDR 6 1 Q9UN73-2;Q9UN73-3;Q9UN73 Q9UN73-2 PCDHA6 Protocadherin alpha-6 1 0 MAS(1)KDR;MAS(1)KDR;MAS(1)KDR ;; 66.258 0.024912 1232335000 477739 692062 399974 526956 358629 604230 546584 866620 589371 682055 TRUE FALSE FALSE 584010.3924 772992.6308 547941.0269 555742.272 322922.6375 635866.5485 429801.8632 654080.0862 707652.3537 512031.2408 1.140575703 1.509659117 1.070132022 1.085367899 0.630669795 1.241851078 0.839405546 1.277422224 1.382049175 1 18.96587231 -4.847407726 9.934992709 1.058540418 1.324578319 0.179589901 0.221267823 0.507199967 53.91222755 0.058342717 0.121805759 1.42E-05 4.847407726 0.266037901 MAS(ph)KDR ddPTM_HeLa_A486_30min_R1 1 MASKDR 6 1 Q9UN73-2;Q9UN73-3;Q9UN73 Q9UN73-2 PCDHA6 Protocadherin alpha-6 1 0 MAS(1)KDR 67.757 0.0076844 0 136310 70225 142800 47319 78955 207860 105010 93226 172390 149730 TRUE FALSE FALSE 126755.3729 64660.11524 198095.9843 110161.0234 69051.72767 182216.3466 78735.38732 72000.47491 187332.904 112236.6334 1.129358295 0.576105263 1.764985088 0.98150684 0.615233419 1.623501534 0.701512375 0.64150601 1.669088766 1 16.77618411 MAS(ph)RPRPR ddPTM_HeLa_A486_30min_R1 1 MASRPRPR 8 2 B1APH4 B1APH4 ZNF487 Putative zinc finger protein 487 1 0 MAS(1)RPRPR 56.563 0.035948 147700000 94416 159340 268530 5202.7 230560 65794 46022 75921 160500 13106 TRUE FALSE FALSE 87797.92596 146713.3181 372512.0075 12112.14853 201641.0149 57677.00522 34506.80883 58635.44564 174412.2692 9824.172294 8.936928561 14.93391135 37.91790253 1.232892519 20.52498764 5.870927697 3.512439297 5.968487104 17.75338054 1 13.26212015 -6.270688012 24.39172232 6.924788753 16.929143 0.207281107 9.662906731 805.3119392 2123868.743 3.366340528 3.011340031 5.36E-07 6.270688012 10.00435424 MAS(ph)VS(ph)QIASR ddPTM_HeLa_A485_30min_R1 2 MASVSQIASR 10 0 A0A5F9ZHI7 A0A5F9ZHI7 2 0 MAS(1)VS(1)QIASR;MAS(1)VS(1)QIASR ; 122.51 0.00019683 2457240000 57228 79189 82561 92872 96580 82952 74690 96928 101001 94409 TRUE FALSE FALSE 69958.17117 88449.4647 113103.7495 97945.3622 86964.15609 87295.23845 58731.87134 73156.25602 121270.9743 70874.57377 0.98707008 1.247971734 1.595829697 1.381953456 1.227014872 1.231686257 0.828673362 1.032193241 1.711064601 1 16.11298053 -6.19482874 2.794487575 1.138822651 1.316233013 0.059644074 0.256648855 0.766640233 11.78202973 0.096801385 0.093888243 6.39E-07 6.19482874 0.177410362 MAS(ph)VS(ph)QIASR ddPTM_HeLa_A486_30min_R1 1 MASVSQIASR 10 0 A0A5F9ZHI7 A0A5F9ZHI7 2 0 MAS(1)VS(1)QIASR 118.32 0.00046071 1218100000 14500 18761 32608 7810.2 32583 25125 22054 23766 21870 15514 TRUE FALSE FALSE 13483.62488 17274.31003 45234.69087 18182.54031 28496.13632 22025.33295 16535.85594 18355.00061 23765.70921 11629.19342 1.159463463 1.485426324 3.889753075 1.563525487 2.450396625 1.893969096 1.421926297 1.578355432 2.043624897 1 13.50546342 -6.554675346 5.237730868 1.565320167 2.147269353 0.12492807 0.738464851 0.433347436 31.1072908 0.289027277 0.226494045 2.79E-07 6.554675346 0.581949186 MASNIFGT(ph)PEENQASWAK ddPTM_HeLa_A485_30min_R1 7 MASNIFGTPEENQASWAK 18 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK ;;;;;; 287.57 2.99E-69 2475943000 1733633 1774680 1441038 1605825 2393860 1793580 2249390 2509430 1583443 2168420 TRUE FALSE FALSE 2119273.68 1982213.388 1974137.923 1693547.154 2155518.893 1887489.075 1768789.451 1893988.358 1901225.486 1627872.801 1.301866877 1.217670931 1.212710183 1.040343664 1.324132261 1.159481917 1.086564902 1.163474417 1.167920175 1 20.63455654 -14 0.031825587 4.67E-09 1.840792517 0.427913547 0.07487823 1345.655172 3.212682778 148.8928354 57.03784273 1.00E-14 14 1.840792513 MASNIFGT(ph)PEENQASWAK ddPTM_HeLa_A486_30min_R1 6 MASNIFGTPEENQASWAK 18 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MASNIFGT(1)PEENQASWAK ;;;;; 276.62 2.04E-68 2624760000 2627580 2494888 1748076 915970 2587245 2399748 2726994 2775919 1875586 2610188 TRUE FALSE FALSE 2443400.211 2297183.989 2424977.842 2132424.451 2262728.607 2103691.491 2044671.258 2143902.842 2038163.305 1956579.935 1.248811851 1.174081338 1.239396254 1.089873412 1.156471334 1.075188114 1.045023115 1.095739971 1.041696926 1 20.89990262 -4.031530737 0.238336977 0.995963081 1.482907445 0.809549209 0.035088397 4.959892766 0.223712615 0.053130764 0.728464294 9.30E-05 4.031530737 0.486944364 MASVPMPSEYT(ph)YVKLRS(ph)DCS(ph)RPSLQWYTR ddPTM_HeLa_A486_30min_R1 1 MASVPMPSEYTYVKLRSDCSRPSLQWYTR 29 3 Q9UNP4-3 Q9UNP4-3 3 0 MASVPMPS(0.378)EY(0.231)T(0.438)Y(0.449)VKLRS(0.442)DCS(0.388)RPS(0.335)LQWY(0.074)T(0.265)R 40.671 0.026323 445330000 178320 162060 89471 37518 154140 150660 216390 138320 157220 174530 TRUE FALSE FALSE 165820.6888 149217.7754 124116.5673 87343.80005 134806.3239 132073.101 162246.9333 106827.5555 170847.9562 130826.552 1.267484974 1.140577147 0.948710834 0.667630529 1.030420215 1.009528257 1.240168229 0.816558672 1.305911939 1 16.99729585 -9.018545762 14.94109598 0.999973454 1.033369596 0.000653404 0.192837945 0 0 0.188066071 0.045612722 9.58E-10 9.018545762 0.033396142 MAT(ph)PGPRDIPLLPGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 MATPGPRDIPLLPGSPR 17 1 F5GXT3;Q9NQ90 F5GXT3 ANO2 Anoctamin;Anoctamin-2 2 0 MAT(1)PGPRDIPLLPGS(1)PR 53.747 0.02939 722100000 325320 467790 623990 48031 652190 271750 251060 354770 377710 129500 TRUE FALSE FALSE 302516.748 430720.6167 865615.639 111818.5954 570386.2488 238224.248 188242.1326 273996.6156 410450.2069 97072.3571 3.11640468 4.43710887 8.917220771 1.151909758 5.875887491 2.454089455 1.939194001 2.822601859 4.228291341 1 16.5667729 -6.280566488 23.89625192 2.568394976 4.722324095 0.233395329 2.000618688 743.8959808 929374.7487 0.69472895 0.613829796 5.24E-07 6.280566488 2.153929118 MATETKDEQIS(ph)GTVSSQK ddPTM_HeLa_A485_30min_R1 2 MATETKDEQISGTVSSQK 18 1 Q5JPF3-2 Q5JPF3-2 1 0 MAT(0.031)ET(0.028)KDEQIS(0.926)GT(0.005)VS(0.005)S(0.005)QK;MAT(0.023)ET(0.023)KDEQIS(0.953)GT(0.001)VS(0.001)S(0.001)QK ; 65.784 0.0065991 282590000 98667 352530 383950 24145 376530 278158 170906 335270 281921 40580 TRUE FALSE FALSE 120615.1338 393755.3169 525989.0825 25463.98021 339041.3511 292721.9228 134390.5369 253044.5068 338499.9588 30464.15282 3.959247922 12.9252016 17.26583653 0.835867006 11.1291902 9.608733402 4.411431945 8.30630375 11.11141875 1 14.894825 -5.256743776 24.98005836 7.152687345 11.53760525 0.17373676 4.650687832 749.8797742 3989258.825 1.253463477 2.083364381 5.54E-06 5.256743776 4.384917908 MATETKDEQIS(ph)GTVSSQK ddPTM_HeLa_A486_30min_R1 1 MATETKDEQISGTVSSQK 18 1 Q5JPF3-2 Q5JPF3-2 1 0 MAT(0.05)ET(0.046)KDEQIS(0.899)GT(0.002)VS(0.002)S(0.002)QK 61.181 0.012352 49438000 44290 74447 130110 3484.3 161240 33845 26366 49581 69941 7665.9 TRUE FALSE FALSE 41185.49971 68547.54859 180492.0765 8111.626487 141015.7757 29669.54801 19768.94793 38292.48865 76003.54219 5746.308743 7.167296704 11.92897069 31.41009029 1.411623853 24.54023652 5.163235972 3.440286419 6.663841147 13.22649819 1 12.48841979 -6.316045711 24.99839203 6.099100983 15.22920167 0.2393134 8.368946341 475.5645557 217708.5858 2.856673513 2.519350408 4.83E-07 6.316045711 9.130100685 MATFPGPGS(ph)SPAR ddPTM_HeLa_A485_30min_R1 1 MATFPGPGSSPAR 13 0 O43187 O43187 IRAK2 Interleukin-1 receptor-associated kinase-like 2 1 0 MATFPGPGS(0.551)S(0.448)PAR 63.185 0.022658 167410000 395970 476060 388950 463520 551740 489880 733310 663820 393900 595230 TRUE FALSE FALSE 484052.1604 531731.0758 532838.7906 488840.9239 496806.8283 515529.3593 576632.3279 501017.1042 472952.1169 446850.1154 1.083253968 1.189953986 1.192432926 1.093970678 1.111797471 1.153696377 1.290437908 1.121219592 1.058413326 1 18.76943147 -7.831430018 2.805974568 1.005963215 1.159481638 0.457701748 0.056903144 0.229797788 3.454825528 0.055882939 0.01541807 1.47E-08 7.831430018 0.153518423 MATFPGPGSS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 MATFPGPGSSPAR 13 0 O43187 O43187 IRAK2 Interleukin-1 receptor-associated kinase-like 2 1 0 MATFPGPGS(0.176)S(0.824)PAR;MATFPGPGS(0.073)S(0.927)PAR ; 103.67 0.00050963 234180000 640030 562880 442450 237820 684530 570600 687800 724400 528940 749270 TRUE FALSE FALSE 595167.2021 518275.3388 613778.4892 553656.9788 598669.8644 500205.1734 515705.1652 559469.9335 574788.9451 561647.9151 1.059680248 0.922776218 1.092817177 0.985772339 1.065916651 0.890602742 0.918200088 0.996122159 1.023397274 1 19.09930649 -6.244039483 24.96885303 0.962455556 1.021236309 0.210522924 0.057383333 1361.381184 1953582.848 0.01892079 0.018877677 5.70E-07 6.244039483 0.058780753 MATLTSGGEKPNKDLES(ph)CS(ph)DDDNQGSK ddPTM_HeLa_A485_30min_R1 2 MATLTSGGEKPNKDLESCSDDDNQGSK 27 2 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 2 0 MATLTSGGEKPNKDLES(1)CS(1)DDDNQGSK;MATLTSGGEKPNKDLES(0.994)CS(0.995)DDDNQGS(0.009)K ; 130.56 3.91E-06 508950000 349568 164078 125443 875160 385040 299566 721950 482680 263577 1265030 TRUE FALSE FALSE 427328.1956 183265.4948 171849.5858 922967.7748 346704.0656 315250.8125 567699.4847 364301.9732 316474.4862 949681.3022 0.449970105 0.192975785 0.180955006 0.971871061 0.36507412 0.331954322 0.597778943 0.38360445 0.333242832 1 19.85708392 -10.77039701 2.604066741 1.145075543 0.424896867 0.391642424 0.215711679 48034406.74 35296217.3 44511477.9 0.058789676 1.70E-11 10.77039701 -0.720178676 MATLTSGGEKPNKDLES(ph)CS(ph)DDDNQGSK ddPTM_HeLa_A486_30min_R1 1 MATLTSGGEKPNKDLESCSDDDNQGSK 27 2 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 2 0 MAT(0.001)LT(0.001)S(0.001)GGEKPNKDLES(0.995)CS(0.987)DDDNQGS(0.016)K 55.033 0.020227 238230000 129020 130670 40603 169760 109070 194060 354590 294510 91000 330210 TRUE FALSE FALSE 119976.3643 120315.2333 56325.56899 395209.8592 95389.42356 170118.8503 265867.8315 227456.5021 98887.95327 247523.2667 0.484707421 0.48607646 0.227556665 1.596657415 0.385375584 0.687284281 1.074112487 0.918929784 0.399509729 1 17.91720462 MATLTSGGEKPNKDLES(ph)CSDDDNQGSK ddPTM_HeLa_A485_30min_R1 1 MATLTSGGEKPNKDLESCSDDDNQGSK 27 2 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 1 0 MAT(0.001)LT(0.001)S(0.003)GGEKPNKDLES(0.505)CS(0.491)DDDNQGSK 60.255 0.010184 325180000 62758 43957 26456 124210 81634 54039 130000 104500 37679 172010 TRUE FALSE FALSE 76718.30059 49097.38877 36243.17533 130995.2778 73506.23233 56868.39848 102224.438 78871.21115 45240.82969 129131.0726 0.594111851 0.380213591 0.280669668 1.014436534 0.569237371 0.44039283 0.791633152 0.61078414 0.350348129 1 16.97847667 -11.22034061 2.319158186 2.413761052 0.564201445 0.28758688 0.208045764 34833105.1 6266554.855 258480729.1 0.052643894 6.02E-12 11.22034061 -1.849559608 MATLTSGGEKPNKDLESCS(ph)DDDNQGSK ddPTM_HeLa_A486_30min_R1 1 MATLTSGGEKPNKDLESCSDDDNQGSK 27 2 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 1 0 MATLTSGGEKPNKDLES(0.002)CS(0.998)DDDNQGSK 242.11 3.38E-50 358390000 199290 236730 81577 214970 193610 350670 560500 447680 161700 543600 TRUE FALSE FALSE 185320.8001 217970.6526 113165.7991 500461.024 169325.6285 307407.9008 420256.9716 345753.0368 175716.2862 407479.0218 0.454798383 0.534924845 0.27772178 1.22818844 0.415544407 0.754414054 1.031358547 0.848517392 0.43122781 1 18.63636626 -5.227812794 24.98817196 0.79906627 0.433725975 0.349293716 0.245017571 756.2949622 562007.728 0.064788982 0.112209797 5.92E-06 5.227812794 -0.365340295 MAVTFIGNSTAIQELFK ddPTM_HeLa_A485_30min_R1 4 MAVTFIGNSTAIQELFK 17 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ;;; ;;; 389.16 1.21E-160 97167000 127883 104177 96861 170934 161292 130395 178819 157391 103806 239331 FALSE FALSE TRUE 156330.1322 116359.5939 132693.9146 180271.6916 145233.2021 137222.2806 140612.8598 118790.6105 124638.912 179670.1863 0.870095008 0.647628838 0.738541643 1.003347831 0.808332229 0.763745413 0.782616542 0.661159277 0.693709483 1 17.45499151 -6.27074031 6.165299657 0.758992723 0.810839139 0.003426444 0.120384751 0.663401294 116.7327303 0.042574867 0.039323942 5.36E-07 6.27074031 0.051846416 MAVTFIGNSTAIQELFK ddPTM_HeLa_A486_30min_R1 4 MAVTFIGNSTAIQELFK 17 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ;;; ;;; 341.27 1.08E-101 109824000 173878 197329 139125 112443 205996 240483 281793 241794 212508 281958 FALSE FALSE TRUE 161690.0501 181691.9314 192997.9259 261772.9866 180158.0608 210814.6525 211285.4109 186742.7845 230928.3645 211353.8816 0.76502049 0.859657415 0.91315061 1.238553012 0.852400058 0.997448691 0.999676038 0.883555027 1.092614731 1 17.68930108 -4.766544568 2.82235777 1.000321081 0.792966416 0.368007346 0.102874391 0.280452992 4.452560291 0.027065091 0.08164939 1.71E-05 4.766544568 -0.207354665 MAVTFIGNSTAIQELFKR ddPTM_HeLa_A485_30min_R1 5 MAVTFIGNSTAIQELFKR 18 1 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ;;;; ;;;; 300.12 7.68E-72 331197000 298620.9 461080 295667 237584 487128 537896 700753 1026187 248199.5 344344 FALSE FALSE TRUE 365048.089 514999.2951 405046.527 250562.6123 438627.8259 566059.4028 551031.3969 774513.0293 298010.863 258505.378 1.412148915 1.992218882 1.566878531 0.969274273 1.696784142 2.189739367 2.131605157 2.996119598 1.152822682 1 17.97983477 -6.009369718 24.20877835 2.023617225 1.502919884 0.079304497 0.57685487 572.6146795 1479484.911 0.179427348 0.192688825 9.79E-07 6.009369718 -0.520697341 MAVTFIGNSTAIQELFKR ddPTM_HeLa_A486_30min_R1 3 MAVTFIGNSTAIQELFKR 18 1 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ;; ;; 312.5 1.68E-86 172281000 179958 125209 108095 82803 177309 131340 197690 181866 102764 215732 FALSE FALSE TRUE 167343.8735 115286.9828 149952.2789 192769.5686 155069.2519 115136.6062 148225.871 140459.0819 111671.6663 161711.303 1.034831025 0.71291852 0.927283845 1.192059955 0.958926488 0.711988612 0.916607982 0.868579248 0.69056191 1 17.303061 -6.113599068 14.26103608 0.834296425 0.962017356 0.174334266 0.138746215 2.087124543 252.7514183 0.047211982 0.047214355 7.70E-07 6.113599068 0.127720931 MCIVLRPS(ph)RVHNSEENTMRALTLK ddPTM_HeLa_A485_30min_R1 1 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 0 MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALT(0.001)LK 41.798 0.0239 542460000 232700 440870 484850 36889 361590 438510 188450 351200 418790 48419 TRUE FALSE FALSE 284463.3122 492425.9114 664216.1913 38904.15266 325588.83 461469.7055 148186.118 265067.6493 502837.3116 36349.03439 7.825883603 13.54715248 18.27328298 1.070293979 8.957289663 12.69551484 4.076755284 7.292288607 13.83358101 1 15.14962942 -5.253165251 24.99146926 7.449959052 13.24861036 0.267363754 4.679598924 902.7197535 2726600.833 1.260984864 2.138083076 5.58E-06 5.253165251 5.798651305 MCIVLRPS(ph)RVHNSEENTMRALTLK ddPTM_HeLa_A486_30min_R1 2 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 0 MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALTLK;MCIVLRPS(0.333)RVHNS(0.333)EENT(0.333)MRALTLK ; 54.223 0.011373 122732000 49352 69680 71825 7560.9 78425 44695 27673 41723.6 65762 23498.1 TRUE FALSE FALSE 45892.67965 64158.30303 99637.56354 17602.15731 68588.20522 39180.98533 20748.9227 32224.0471 71462.30311 17614.02281 2.605462712 3.642455997 5.656718207 0.99932636 3.893954603 2.22442004 1.177977508 1.829454148 4.057125613 1 14.10443682 -5.271626272 24.97878909 2.236357605 3.935636753 0.307602446 1.233895224 865.7073722 2122757.967 0.344902478 0.518133168 5.35E-06 5.271626272 1.699279148 MCIVLRPSRVHNS(ph)EENTMRALTLK ddPTM_HeLa_A485_30min_R1 1 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 0 MCIVLRPS(0.285)RVHNS(0.357)EENT(0.357)MRALTLK 62.684 0.0063458 77628000 101750 156610 153680 45175 142330 134900 97688 158000 143560 46667 TRUE FALSE FALSE 124383.9365 174924.1772 210532.6272 47642.79586 128159.1254 141963.1554 76816.16076 119250.2523 172371.1752 35033.77574 3.550400544 4.993015268 6.009418702 1.359910396 3.658159097 4.052179715 2.192631514 3.403865263 4.920142678 1 15.09645886 -5.249632119 24.98284605 3.086145851 4.865151766 0.320748651 1.261326355 950.3346441 2010798.655 0.335862287 0.575873085 5.63E-06 5.249632119 1.779005915 MCIVLRPSRVHNS(ph)EENTMRALTLK ddPTM_HeLa_A486_30min_R1 2 MCIVLRPSRVHNSEENTMRALTLK 24 3 F8WF29;C9J131 F8WF29 FAP 1 0 MCIVLRPS(0.08)RVHNS(0.459)EENT(0.459)MRALT(0.001)LK;MCIVLRPS(0.076)RVHNS(0.462)EENT(0.462)MRALT(0.001)LK ; 62.684 0.0063458 1449482000 47509.2 69689 77612 91.944 77600 42576.2 29424.9 35757 65051 8154.3 TRUE FALSE FALSE 44179.05042 64166.58984 107665.4449 214.0502786 67866.68441 37323.58133 22062.4788 27615.91167 70689.67306 6112.410204 7.227762689 10.49775583 17.61423748 0.035018965 11.10309716 6.106197078 3.609456509 4.518006931 11.56494258 1 12.57752565 -5.262862962 24.99993295 5.756121639 11.65170211 0.317986468 4.247382831 161.1969213 2830842.916 1.151531659 1.818140493 5.46E-06 5.262862962 5.895580466 MCLFAGFQR ddPTM_HeLa_A485_30min_R1 2 MCLFAGFQR 9 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 196.46 2.44E-11 153337000 135658 157549 162529 136027 199180 153106 199694 198681 130328 205305 FALSE FALSE TRUE 165834.6541 175972.9851 222655.2405 143457.8106 179348.9398 161122.3934 157027.7456 149954.1732 156483.6342 154126.2419 1.075966377 1.141745772 1.444629012 0.930781214 1.163649601 1.045392345 1.018825501 0.972930835 1.015295204 1 17.23375299 -5.961854268 1.052874904 0.999677984 1.18977364 0.279889078 0.117899129 0.668986792 1.588647323 0.057035532 0.069761253 1.09E-06 5.961854268 0.190095656 MCLFAGFQR ddPTM_HeLa_A486_30min_R1 2 MCLFAGFQR 9 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 201.97 1.56E-11 202004000 208300 233640 214370 75034 255340 206850 247520 226350 221770 239410 FALSE FALSE TRUE 193699.2457 215125.5155 297379.805 174682.944 223312.8762 181330.9501 185587.878 174815.0462 240993.2022 179460.1777 1.079343886 1.19873678 1.657079631 0.973379979 1.244358939 1.010424443 1.034145181 0.974116088 1.342878433 1 17.45330422 MCLLEWCRREK ddPTM_HeLa_A486_30min_R1 1 MCLLEWCRREK 11 2 E7EUN9;Q9NX74 E7EUN9 DUS2 tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 0 0 57.96 0.011105 0 233060 557450 319530 437070 617250 783290 1089700 915100 379000 582340 FALSE FALSE TRUE 216723.6975 513275.6318 443260.5733 1017521.048 539828.7494 686655.6437 817045.5343 706751.7065 411852.0252 436518.2736 0.496482531 1.175839966 1.01544563 2.330993019 1.236669303 1.573028405 1.871732717 1.619065568 0.943493205 1 18.73568252 -4.40863617 1.51478841 1.530426845 0.315139863 0.333988034 0.409872049 0.89989815 2.409697604 0.114612205 1.508342527 3.90E-05 4.40863617 -1.215286983 MDDNLRQS(ph)PQLPPR ddPTM_HeLa_A485_30min_R1 2 MDDNLRQSPQLPPR 14 1 Q5HYI7-5;Q5HYI7 Q5HYI7-5 MTX3 Metaxin-3 1 0 MDDNLRQS(1)PQLPPR;MDDNLRQS(1)PQLPPR ; 80.609 0.0007911 0 180680 252880 232960 154517 295680 237400 296470 342690 227180 236240 TRUE FALSE FALSE 220871.6427 282452.1162 319141.5983 162957.8725 266241.061 249829.8969 233126.7626 258644.7402 272772.9422 177349.7157 1.24540173 1.592627962 1.799504426 0.918850486 1.501220681 1.408685072 1.314503165 1.458388243 1.538051195 1 17.43623749 -11.04339961 2.50535402 0.458778433 1.421337616 0.244887141 0.221076248 9915445.268 3017827.259 30811709.74 0.055725573 9.05E-12 11.04339961 0.962559182 MDEFFS(ph)EIEETR ddPTM_HeLa_A486_30min_R1 1 MDEFFSEIEETR 12 0 A0A286YF28 A0A286YF28 1 0 MDEFFS(0.998)EIEET(0.002)R 65.395 0.018293 158980000 163760 186070 99361 3820.8 121700 92484 83875 80858 137400 63905 TRUE FALSE FALSE 152281.2697 171325.1355 137836.2402 8895.015493 106435.2512 81074.26439 62888.58786 62448.39852 149309.9426 47902.77205 3.178965708 3.576518189 2.877416782 0.185688951 2.221901711 1.692475423 1.312838176 1.303648951 3.116937418 1 15.54782152 -5.02103623 21.27792664 1.580554516 3.340050396 0.529705915 0.727820888 79.45882131 80373.47898 0.189465983 0.334444601 9.53E-06 5.02103623 1.75949588 MDFAFPGSTNS(ph)LHR ddPTM_HeLa_A485_30min_R1 4 MDFAFPGSTNSLHR 14 0 P16144-4;P16144-2;P16144-3;P16144 P16144-4 ITGB4 Integrin beta-4 1 0 MDFAFPGST(0.003)NS(0.997)LHR;MDFAFPGS(0.001)T(0.029)NS(0.97)LHR;MDFAFPGST(0.01)NS(0.99)LHR;MDFAFPGST(0.001)NS(0.999)LHR ;;; 154.48 2.35E-08 602760000 1064020 1032730 707900 892990 793620 1024190 1235560 1090240 772440 1655670 TRUE FALSE FALSE 1300707.578 1153498.79 969781.6682 941771.7825 714604.4062 1077815.005 971572.5124 822856.9306 927461.6228 1242941.939 1.046474929 0.928039157 0.780230868 0.757695716 0.574929837 0.867148312 0.781671679 0.662023627 0.74618258 1 20.24532748 -4.590293021 2.120935967 0.752345981 1.052317125 0.407640727 0.107385879 0.340839296 2.652675385 0.028265293 0.150860697 2.57E-05 4.590293021 0.299971144 MDFAFPGSTNS(ph)LHR ddPTM_HeLa_A486_30min_R1 4 MDFAFPGSTNSLHR 14 0 P16144-4;P16144-2;P16144-3;P16144 P16144-4 ITGB4 Integrin beta-4 1 0 MDFAFPGST(0.063)NS(0.937)LHR;MDFAFPGS(0.001)T(0.005)NS(0.994)LHR;MDFAFPGST(0.004)NS(0.996)LHR;MDFAFPGST(0.001)NS(0.999)LHR ;;; 164.97 4.63E-12 462406000 762180 837150 824790 176549 1165810 876360 941610 832130 1122710 1112440 TRUE FALSE FALSE 708755.1179 770811.1852 1144170.777 411014.9943 1019583.239 768243.6134 706009.2187 642672.1643 1220027.407 833877.7832 0.849950835 0.924369495 1.372108479 0.492895965 1.222701048 0.92129042 0.846657907 0.770703066 1.463077002 1 19.66947643 -7.75320661 24.9990761 1.231538547 0.932735174 0.194962868 0.248701823 257.8382879 782951.2549 0.165002734 0.060030652 1.77E-08 7.75320661 -0.298803373 MDFKEDLSGIAEMFKT(ph)PVK ddPTM_HeLa_A485_30min_R1 2 MDFKEDLSGIAEMFKTPVK 19 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 MDFKEDLSGIAEMFKT(1)PVK;MDFKEDLS(0.002)GIAEMFKT(0.998)PVK ; 173.47 7.45E-13 56271000 145090 67485 36705 239234 117140 94263 171072 138219 79360 381870 TRUE FALSE FALSE 177364.7699 75376.78371 50283.70692 252302.7476 105477.1303 99198.46492 134521.0697 104320.5735 95286.82407 286676.8368 0.618692364 0.262932941 0.175402057 0.880094641 0.367930425 0.346028881 0.469242898 0.363896067 0.332384106 1 18.12906582 -10.43060657 2.781835523 1.015081812 0.421039436 0.455312341 0.188952275 13853662.14 15319834.08 1642080.177 0.048626275 3.71E-11 10.43060657 -0.594042376 MDFKEDLSGIAEMFKT(ph)PVK ddPTM_HeLa_A486_30min_R1 1 MDFKEDLSGIAEMFKTPVK 19 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 MDFKEDLSGIAEMFKT(1)PVK 115.55 3.43E-05 33552000 72487 51814 17886 44951 32698 76506 100050 87762 51235 122680 TRUE FALSE FALSE 67406.03562 47708.06994 24811.9382 104648.1997 28596.71194 67067.46758 75016.43178 67780.50843 55676.09105 91960.12949 0.732991961 0.518790809 0.26981191 1.137973601 0.310968592 0.729310278 0.815749523 0.737064082 0.605437284 1 16.48872088 -13.99999999 0.125383489 2.17115361 0.491239941 0.174983792 0.23593407 255.4433662 2.043627796 75.20867603 1.947212989 1.00E-14 13.99999999 -1.679913669 MDFY(ph)KT(ph)LR ddPTM_HeLa_A485_30min_R1 1 MDFYKTLR 8 1 P04150-9;P04150-8 P04150-9 NR3C1 Glucocorticoid receptor 2 0 MDFY(1)KT(1)LR 43.77 0.02764 587790000 10629 38587 16952 6222.8 25856 25102 23479 27127 20381 8526.9 TRUE FALSE FALSE 12993.38438 43099.41399 23223.25023 6562.735807 23281.68585 26416.3019 18462.51984 20474.06072 24471.27975 6401.300756 2.029803766 6.732915017 3.627895504 1.025219101 3.637024215 4.126708448 2.884182535 3.19842193 3.822860492 1 12.64414938 -4.994193894 24.9992523 2.945488444 4.581120875 0.151849556 1.460233356 253.5648854 1091743.103 0.363555403 0.753390591 1.01E-05 4.994193894 1.635632432 MDK(ac)GEHR ddPTM_HeLa_A485_30min_R1 2 MDKGEHR 7 1 H7BY36;A0A0D9SFL3;B0QYK0;C9JGE3;Q01844-2;Q01844-6;Q01844-3;Q01844;Q01844-5 H7BY36 EWSR1 RNA-binding protein EWS 0 1 ; MDK(1)GEHR;MDK(1)GEHR 107.69 0.0029312 16143000 16666 23486.8 23671.2 13885 28915.4 28175.5 43289 64565 62025 78399 FALSE TRUE FALSE 20373.2942 26233.37695 32428.16192 14643.50239 26036.48125 29650.72561 34039.95151 48730.33252 74472.84857 58855.57213 0.34615744 0.44572461 0.55097862 0.248804011 0.442379206 0.503787909 0.578364126 0.827964639 1.265349157 1 15.84489139 -7.337438105 1.784085866 1.131933537 0.422943891 0.87553995 0.105767036 0.117587564 0.677565397 0.08202808 0.030448139 4.60E-08 7.337438105 -0.708989646 down MDK(ac)GEHR ddPTM_HeLa_A486_30min_R1 2 MDKGEHR 7 1 H7BY36;A0A0D9SFL3;B0QYK0;C9JGE3;Q01844-2;Q01844-6;Q01844-3;Q01844;Q01844-5 H7BY36 EWSR1 RNA-binding protein EWS 0 1 ; MDK(1)GEHR;MDK(1)GEHR 118.5 0.0031399 50412000 57104 59464 64912 29694 85664 76970 83467 76718 68457 81719 FALSE TRUE FALSE 53101.30449 54751.85608 90047.6648 69129.13265 74919.22233 67474.22397 62582.67378 59250.98614 74390.90788 61256.0305 0.866874723 0.893819851 1.470021222 1.128527789 1.223050559 1.101511532 1.02165735 0.967267805 1.214425866 1 15.90256426 -6.58019419 6.582877295 1.049183152 1.128039198 0.030644294 0.169191248 0.840126047 73.9924494 0.068547062 0.053023001 2.63E-07 6.58019419 0.078856046 MDLS(ph)YSLESIEDPK ddPTM_HeLa_A485_30min_R1 1 MDLSYSLESIEDPK 14 0 A0A087X0P0;Q02224-3;Q02224 A0A087X0P0 CENPE Kinesin-like protein;Centromere-associated protein E 1 0 MDLS(0.999)YS(0.001)LESIEDPK 116.96 0.00014701 13091000 12882 10127 7663.6 18848 18165 11139 19500 15611 10403 19471 TRUE FALSE FALSE 15747.55646 11311.26456 10498.68455 19877.61851 16356.42882 11722.22082 15333.6657 11782.37777 12490.78668 14617.23804 1.07732777 0.773830496 0.718239966 1.359875133 1.118982176 0.80194499 1.049012519 0.806060471 0.854524408 1 13.83538312 -6.269137113 24.8184285 0.899356272 0.999817346 0.078288812 0.182464993 1845.828304 5951160.482 0.06846664 0.061509427 5.38E-07 6.269137113 0.100461074 MDLS(ph)YSLESIEDPK ddPTM_HeLa_A486_30min_R1 1 MDLSYSLESIEDPK 14 0 A0A087X0P0;Q02224-3;Q02224 A0A087X0P0 CENPE Kinesin-like protein;Centromere-associated protein E 1 0 MDLS(0.929)Y(0.017)S(0.053)LES(0.001)IEDPK 66.989 0.012925 11577000 15612 12385 7715.7 8162.2 14327 15899 22370 20668 14768 27456 TRUE FALSE FALSE 14517.67942 11403.56749 10703.42567 19002.01409 12529.97407 13937.54303 16772.78939 15962.34758 16048.10213 20580.83889 0.705397846 0.554086622 0.520067512 0.923286665 0.60881746 0.677209666 0.814971124 0.77559266 0.779759378 1 14.32901417 -13.99999166 0.071306632 2.096273427 0.325444635 0.493212542 0.104329823 252.2410302 1.289675047 44.41820632 5.317387349 1.00E-14 13.99999166 -1.770828792 MDMMSLNSQLLDAIQQK ddPTM_HeLa_A485_30min_R1 3 MDMMSLNSQLLDAIQQK 17 0 H0YHW1;H0YHP2;Q6ZP65-2;Q6ZP65 H0YHW1 CCDC64 Bicaudal D-related protein 1 0 0 ;; ;; 55.885 0.014081 553720000 165876.1 327349 331291 66095.2 251968 279178 199548 236607 248236 89984.4 FALSE FALSE TRUE 202774.6662 365629.618 453849.3271 69705.81341 226881.1812 293795.3284 156912.9396 178578.7623 298054.6882 67552.94512 3.001714667 5.412489675 6.71842399 1.031869348 3.358568317 4.349112061 2.322814192 2.643537775 4.412164232 1 16.04373105 -7.43885249 0.139025407 1.17E-10 6.031915279 0.229691493 1.52629223 8.314640867 1.191657427 22.44445619 22.48119257 3.64E-08 7.43885249 6.031915279 MDMT(ph)SPEQSR ddPTM_HeLa_A485_30min_R1 1 MDMTSPEQSR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 MDMT(0.5)S(0.5)PEQSR 179.94 9.43E-10 0 461680 569310 560380 485720 760270 577820 700450 733290 546110 709400 TRUE FALSE FALSE 564379.1232 635885.8522 767687.8814 512253.6537 684574.8493 608073.7617 550793.1353 553449.4777 655709.2678 532559.6355 1.059748215 1.194018115 1.441505946 0.961870971 1.285442613 1.141794686 1.03423748 1.039225358 1.231241018 1 19.02258356 -6.528344387 14.73660466 1.080661875 1.192619589 0.137794302 0.132104066 2.031784683 5450.803065 0.048975136 0.038482486 2.96E-07 6.528344387 0.111957713 MDRDPLGGLADMFGQMPGSGIGT(ph)GPGVIQDRFSPTMGR ddPTM_HeLa_A485_30min_R1 1 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 38 2 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 MDRDPLGGLADMFGQMPGS(0.086)GIGT(0.459)GPGVIQDRFS(0.381)PT(0.073)MGR 51.623 0.017629 129670000 11148 14611 12039 13689 21213 14647 19781 14283 13202 16087 TRUE FALSE FALSE 13627.83414 16319.62935 16492.72708 14436.79541 19100.95924 15413.89427 15554.62775 10780.07186 15851.5203 12076.80696 1.128430237 1.351319882 1.365652953 1.195414935 1.581623297 1.276321988 1.287975191 0.892625997 1.312558887 1 13.55995144 -7.09641711 7.939475959 1.077305466 1.323215852 0.361265574 0.148762498 0.318367728 23.48094215 0.066975395 0.038600349 8.01E-08 7.09641711 0.245910386 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_A485_30min_R1 15 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 38 2 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 MDRDPLGGLADMFGQMPGS(0.005)GIGT(0.005)GPGVIQDRFS(0.827)PT(0.164)MGR;MDRDPLGGLADMFGQMPGS(0.017)GIGT(0.078)GPGVIQDRFS(0.898)PT(0.006)MGR;MDRDPLGGLADMFGQMPGS(0.003)GIGT(0.056)GPGVIQDRFS(0.898)PT(0.042)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.982)PT(0.017)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.986)PT(0.014)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.987)PT(0.013)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.95)PT(0.05)MGR;MDRDPLGGLADMFGQMPGS(0.003)GIGT(0.041)GPGVIQDRFS(0.72)PT(0.236)MGR;MDRDPLGGLADMFGQMPGS(0.028)GIGT(0.028)GPGVIQDRFS(0.913)PT(0.031)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.998)PT(0.002)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.989)PT(0.011)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.951)PT(0.049)MGR;MDRDPLGGLADMFGQMPGS(0.006)GIGT(0.005)GPGVIQDRFS(0.971)PT(0.018)MGR;MDRDPLGGLADMFGQMPGSGIGT(0.001)GPGVIQDRFS(0.996)PT(0.003)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.977)PT(0.023)MGR ;;;;;;;;;;;;;; 328.66 9.40E-130 20995200000 1228886 1410147 1558107 1336375 2092697 1422284 1862129 1903129 1470349 1889391 TRUE FALSE FALSE 1502247.451 1575051.425 2134515.618 1409377.782 1884340.739 1496752.591 1464269.927 1436383.629 1765434.557 1418400.595 1.059113664 1.110441881 1.504875015 0.993638741 1.328496861 1.05523968 1.032338771 1.012678388 1.244665691 1 20.43583362 -6.309402908 24.77755122 1.067486481 1.199925346 0.161593509 0.148408391 682.55287 352598.6522 0.051048876 0.04502103 4.90E-07 6.309402908 0.132438865 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_A486_30min_R1 16 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 38 2 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 MDRDPLGGLADMFGQMPGS(0.042)GIGT(0.026)GPGVIQDRFS(0.919)PT(0.013)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.992)PT(0.008)MGR;MDRDPLGGLADMFGQMPGS(0.004)GIGT(0.03)GPGVIQDRFS(0.898)PT(0.068)MGR;MDRDPLGGLADMFGQMPGS(0.06)GIGT(0.279)GPGVIQDRFS(0.506)PT(0.155)MGR;MDRDPLGGLADMFGQMPGS(0.004)GIGT(0.017)GPGVIQDRFS(0.718)PT(0.261)MGR;MDRDPLGGLADMFGQMPGS(0.001)GIGT(0.002)GPGVIQDRFS(0.987)PT(0.011)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.998)PT(0.002)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.964)PT(0.036)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.997)PT(0.003)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.919)PT(0.081)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.996)PT(0.004)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.984)PT(0.016)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.999)PT(0.001)MGR;MDRDPLGGLADMFGQMPGS(0.008)GIGT(0.027)GPGVIQDRFS(0.874)PT(0.091)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.985)PT(0.015)MGR;MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.996)PT(0.004)MGR ;;;;;;;;;;;;;;; 385.82 2.47E-195 18211702000 1847271.9 2081180 1843993.3 799517.1 2619842.3 2166217 2343964 2477823 1837484 2297306.3 TRUE FALSE FALSE 1717787.679 1916259.717 2558036.89 1861316.214 2291237.25 1898971.171 1757479.415 1913676.793 1996758.593 1722045.85 0.997527261 1.112780892 1.485463869 1.080874946 1.330532082 1.102741354 1.020576436 1.111280977 1.159526962 1 20.71569212 -6.495825153 23.8389064 1.079196546 1.206696541 0.175401147 0.133656377 747.1429737 658363.766 0.047451147 0.0417083 3.19E-07 6.495825153 0.127499996 MDRT(ph)PEKDK ddPTM_HeLa_A485_30min_R1 3 MDRTPEKDK 9 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 MDRT(1)PEKDK;MDRT(1)PEKDK;MDRT(1)PEKDK ;; 84.365 0.015949 1578413000 2069490 1190653 542439 4787620 1106960 1356830 2269480 1919790 1280560 5490150 TRUE FALSE FALSE 2529840.911 1329889.511 743109.7589 5049155.558 996747.1756 1427871.521 1784587.058 1448958.492 1537556.646 4121556.644 0.613807144 0.322666804 0.180298325 1.225060334 0.241837554 0.346439863 0.432988604 0.351556127 0.373052412 1 21.97475789 -10.24327671 4.227328364 1.000343868 0.451881444 0.254234155 0.280419655 762492826.8 1278217658 3327104.725 0.069326089 5.71E-11 10.24327671 -0.548462423 MDRT(ph)PEKDK ddPTM_HeLa_A486_30min_R1 3 MDRTPEKDK 9 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 MDRT(1)PEKDK;MDRT(1)PEKDK;MDRT(1)PEKDK ;; 121.04 0.00085691 1528640000 3277760 1401420 998640 2218750 1073630 5443300 4141290 2946350 2950410 6464300 TRUE FALSE FALSE 3048005.95 1290366.375 1385340.153 5165362.129 938965.3142 4771760.989 3105095.44 2275530.423 3206153.914 4845597.204 0.62902586 0.266296665 0.28589668 1.065990818 0.193777005 0.984762205 0.640807584 0.469607837 0.661663316 1 22.20824305 -14 0.076730779 2.338265703 0.140573772 0.200787061 0.271104294 445.361127 2.428610782 103.6605002 10.60960489 1.00E-14 14 -2.197691931 MDRT(ph)PPPPTLS(ph)PAAITVGR ddPTM_HeLa_A485_30min_R1 4 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 2 0 MDRT(1)PPPPT(0.016)LS(0.984)PAAITVGR;MDRT(0.997)PPPPT(0.007)LS(0.997)PAAITVGR;MDRT(0.993)PPPPT(0.013)LS(0.993)PAAIT(0.001)VGR;MDRT(0.999)PPPPT(0.004)LS(0.997)PAAITVGR ;;; 121.46 2.72E-06 676410000 509321 683690 688497 609880 887457 647799 857299 934372 632094 769175 TRUE FALSE FALSE 622617.6993 763641.5982 943200.6911 643196.2001 799098.665 681716.754 674130.0652 705215.802 758949.4679 577433.8281 1.078249436 1.322474647 1.633435114 1.113887287 1.383879202 1.180597188 1.167458559 1.221292844 1.314348815 1 19.1392961 -6.280680316 23.53234879 1.189990202 1.314754116 0.137528641 0.159942027 861.3768475 1053489.603 0.056157504 0.049624891 5.24E-07 6.280680316 0.124763915 MDRT(ph)PPPPTLS(ph)PAAITVGR ddPTM_HeLa_A486_30min_R1 9 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 2 0 MDRT(1)PPPPT(0.037)LS(0.963)PAAITVGR;MDRT(0.999)PPPPT(0.008)LS(0.992)PAAITVGR;MDRT(1)PPPPT(0.017)LS(0.983)PAAITVGR;MDRT(1)PPPPT(0.018)LS(0.939)PAAIT(0.044)VGR;MDRT(1)PPPPT(0.019)LS(0.981)PAAITVGR;MDRT(1)PPPPT(0.094)LS(0.906)PAAITVGR;MDRT(1)PPPPT(0.045)LS(0.955)PAAITVGR;MDRT(1)PPPPT(0.037)LS(0.959)PAAIT(0.004)VGR;MDRT(1)PPPPT(0.017)LS(0.983)PAAITVGR ;;;;;;;; 144.89 2.01E-08 4938600000 2355770 2643740 2110660 978988 3102680 2551970 2993350 3006680 2246190 2886140 TRUE FALSE FALSE 2190642.688 2434240.414 2927964.077 2279133.539 2713512.943 2237133.888 2244382.17 2322124.599 2440891.558 2163431.758 1.01257767 1.125175502 1.353388692 1.05348067 1.254263248 1.034067231 1.037417594 1.073352367 1.12824985 1 21.04489018 -6.288457862 24.6706097 1.058126933 1.162705695 0.234006643 0.094950181 994.5127888 908087.1915 0.033329776 0.029400615 5.15E-07 6.288457862 0.104578762 MDRT(ph)PPPPTLSPAAITVGR ddPTM_HeLa_A485_30min_R1 5 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(0.996)PPPPT(0.003)LSPAAITVGR ;;;; 134.91 2.70E-06 4239340000 554772 574348 423009 1158530 731015 545665 653405 592003 376157 718658 TRUE FALSE FALSE 678179.1175 641513.0024 579497.632 1221817.56 658232.5799 574235.1756 513799.6839 446813.336 451648.2596 539509.7865 1.257028388 1.189066479 1.074118851 2.264680995 1.220056793 1.064364707 0.952345438 0.828183931 0.837145629 1 19.0412896 -6.285125083 2.923955463 0.907602594 1.427793079 0.371885212 0.310307154 0.310433103 5.347027458 0.121469935 0.111000761 5.19E-07 6.285125083 0.520190486 MDRT(ph)PPPPTLSPAAITVGR ddPTM_HeLa_A486_30min_R1 4 MDRTPPPPTLSPAAITVGR 19 1 Q8NDX5-2;Q8NDX5;Q8NDX5-7;E7EX82;H7C4H9 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR ;;; 156.47 6.32E-09 4507420000 311460 309431 186827 689081 286898 277220 362493 287660 185492 354196 TRUE FALSE FALSE 289628.2624 284910.5606 259171.4178 1604215.392 250912.5776 243019.415 271793.4173 222166.0976 201570.5959 265503.0162 1.090866185 1.073097265 0.976152443 6.042173891 0.945046053 0.915316965 1.023692391 0.836774289 0.759202659 1 18.01836872 MDS(ph)DEDEKEGEEEK ddPTM_HeLa_A485_30min_R1 2 MDSDEDEKEGEEEK 14 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MDS(1)DEDEKEGEEEK;MDS(1)DEDEKEGEEEK ; 254.72 2.11E-40 2399720000 1699610 765930 422985 5304700 1255470 1031110 2689460 1867700 663290 6186540 TRUE FALSE FALSE 2077682.381 855498.8508 579464.7534 5594482.329 1130470.999 1085097.325 2114834.9 1409643.647 796406.2189 4644349.433 0.447357033 0.184202085 0.124767691 1.204578254 0.243407826 0.233638175 0.455356543 0.303517999 0.171478531 1 22.14704509 -10.20042346 4.194306735 1.000273476 0.378070029 0.285206196 0.297131135 53450588.93 38997350.53 122422.1072 0.072546356 6.30E-11 10.20042346 -0.622203447 MDS(ph)DEDEKEGEEEK ddPTM_HeLa_A486_30min_R1 4 MDSDEDEKEGEEEK 14 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MDS(1)DEDEKEGEEEK;MDS(1)DEDEKEGEEEK;MDS(1)DEDEKEGEEEK;MDS(1)DEDEKEGEEEK ;;; 278.2 7.20E-48 4967260000 3539330 3024470 939305 5492280 2028090 4774520 7498070 5824780 2021410 13897790 TRUE FALSE FALSE 3291241.244 2784799.982 1303029.051 12786305.4 1773708.041 4185488.266 5621973.58 4498604.748 2196627.446 10417692.92 0.315928034 0.267314462 0.125078466 1.227364398 0.170259198 0.401767291 0.539656296 0.431823512 0.210855461 1 23.31253248 -11.01967829 2.791346989 1.659758873 0.418629558 0.259163367 0.298936774 56027038.2 19280112.12 237073572.8 0.073722437 9.56E-12 11.01967829 -1.241129315 MDS(ph)DEDEKEGEEEKVAK ddPTM_HeLa_A485_30min_R1 1 MDSDEDEKEGEEEKVAK 17 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MDS(1)DEDEKEGEEEKVAK 110.44 7.05E-05 992990000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 MDS(ph)FDEDLARPSGLLAQER ddPTM_HeLa_A485_30min_R1 3 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER ;; 227.6 2.53E-35 983150000 332087 392370 377268 456930 534030 412765 631960 604350 459480 638610 TRUE FALSE FALSE 405958.6075 438254.2583 516835.1326 481890.9289 480860.0981 434376.7371 496936.5834 456132.2149 551693.4214 479416.2797 0.846776851 0.914141377 1.07805086 1.005161796 1.003011617 0.906053373 1.036545074 0.951432469 1.150760716 1 18.87091937 -4.566427713 5.586877043 1.010349036 0.861519377 0.439604496 0.063103541 0.147153609 10.90024007 0.015694983 0.044926051 2.71E-05 4.566427713 -0.148829658 MDS(ph)FDEDLARPSGLLAQER ddPTM_HeLa_A486_30min_R1 5 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER ;;;; 255.58 2.74E-58 1649240000 495149 517285 356172 244941.5 585776 616803 751889 779250 482251 758665 TRUE FALSE FALSE 460441.6121 476293.4527 494091.337 570236.1907 512302.5119 540708.1171 563758.4195 601831.7859 524052.905 568690.3459 0.809652591 0.837526883 0.868823149 1.002718254 0.900846156 0.950795316 0.991327571 1.058276776 0.921508355 1 19.11728379 -4.547450522 0.55090857 0.99460391 0.704610792 0.669721673 0.043904786 1.795671351 0.519081291 0.025970581 0.321302896 2.83E-05 4.547450522 -0.289993119 MDS(ph)T(ph)EPPYSQK ddPTM_HeLa_A486_30min_R1 1 MDSTEPPYSQK 11 0 P68104;Q5VTE0;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 0 MDS(0.995)T(0.995)EPPY(0.002)S(0.008)QK 40.589 0.028831 1736100000 754540 1717800 2061400 0 1045900 368930 167540 342530 1158500 55615 TRUE FALSE FALSE 701650.6424 1581675.272 2859629.286 0 914713.4694 323415.1676 125619.7199 264543.3964 1258919.713 41688.64201 16.83073875 37.94019656 68.59492534 0 21.94155111 7.757872457 3.013284048 6.345694742 30.19814636 1 15.34736676 -5.284335174 24.99239737 10 40.80378398 0.485045331 14.67656778 646.3614637 705548.3225 4.133263421 6.135212106 5.20E-06 5.284335174 30.80378398 MDSNFGLAGLPGS(ph)PK ddPTM_HeLa_A485_30min_R1 1 MDSNFGLAGLPGSPK 15 0 O43463;O43463-2 O43463 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 1 0 MDSNFGLAGLPGS(1)PK 129.11 2.21E-05 0 200720 177950 121900 328690 248720 212490 331160 323880 163240 441580 TRUE FALSE FALSE 245369.4715 198759.7045 166995.8827 346645.5024 223956.5635 223615.6478 260404.9607 244447.9222 196000.7707 331502.2327 0.740174416 0.599572748 0.503754926 1.045680747 0.67558086 0.674552464 0.785530036 0.737394497 0.591250228 1 18.33865906 -11.44883044 2.300234404 4.143251143 0.708309972 0.289119831 0.1382836 7484298.103 929880.2847 122018965.7 0.035293484 3.56E-12 11.44883044 -3.434941171 MDYEDDRLR ddPTM_HeLa_A485_30min_R1 2 MDYEDDRLR 9 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 ; ; 113.22 0.0010108 615050000 133485 180735 197979 163390 251542 186624 220331 209805 179676 237004 FALSE FALSE TRUE 163178.2777 201870.3861 271219.6707 172315.582 226497.5953 196395.3441 173255.4819 158349.9948 215735.3251 177923.2645 0.917127269 1.134592413 1.524363165 0.968482578 1.273007191 1.103820485 0.973765192 0.889990385 1.212518923 1 17.44089564 -6.55767128 5.443477917 1.011890237 1.17293066 0.132366569 0.172928641 0.357654243 27.69945647 0.066376116 0.051878714 2.77E-07 6.55767128 0.161040423 MDYEDDRLR ddPTM_HeLa_A486_30min_R1 1 MDYEDDRLR 9 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 101.65 0.0021333 301610000 154420 185890 160670 60640 230050 167110 203740 210740 156900 163750 FALSE FALSE TRUE 143595.9554 171159.3994 222885.7269 141172.9846 201194.9839 146493.6672 152762.0971 162759.1024 170500.2183 122745.9342 1.169863233 1.394420113 1.815829815 1.150123509 1.639117297 1.193470629 1.244538958 1.325983655 1.389049825 1 16.90531571 -6.297357762 24.97469929 1.251853221 1.437135409 0.189798988 0.207617757 1117.71752 777165.6849 0.071467644 0.063030627 5.04E-07 6.297357762 0.185282188 MEEDIDTRKINNS(ph)FLRDHS(ph)Y(ph)AT(ph)EGAK ddPTM_HeLa_A485_30min_R1 1 MEEDIDTRKINNSFLRDHSYATEGAK 26 3 E9PCT7 E9PCT7 PPP2R2B 4 0 MEEDIDT(0.734)RKINNS(0.83)FLRDHS(0.83)Y(0.817)AT(0.788)EGAK 40.463 0.037501 1213300000 309760 302630 225620 202380 376220 282770 312070 315110 324710 267150 TRUE FALSE FALSE 378665.0433 338019.946 309086.2268 213435.5069 338762.2158 297575.4 245393.6951 237828.7784 389876.3186 200554.4215 1.888091225 1.685427543 1.541158876 1.064227382 1.689128633 1.483763847 1.22357659 1.18585657 1.943992636 1 17.61363425 -4.697025961 2.316376518 1.386667831 1.859027147 0.274605533 0.272831511 0.424211793 4.310610514 0.072245002 0.280699408 2.01E-05 4.697025961 0.472359316 MEEDIDTRKINNS(ph)FLRDHS(ph)Y(ph)AT(ph)EGAK ddPTM_HeLa_A486_30min_R1 1 MEEDIDTRKINNSFLRDHSYATEGAK 26 3 E9PCT7 E9PCT7 PPP2R2B 4 0 MEEDIDT(0.733)RKINNS(0.831)FLRDHS(0.831)Y(0.818)AT(0.788)EGAK 40.799 0.036853 355850000 219750 212670 172510 7346.8 217220 216860 168280 213130 212460 70986 TRUE FALSE FALSE 204346.6598 195817.2547 239310.492 17103.72169 189974.2421 190106.0181 126174.5641 164604.9516 230876.2039 53210.64356 3.840334304 3.68003921 4.497417734 0.32143422 3.570230116 3.572706612 2.371227929 3.093459139 4.338910196 1 15.69942723 -10.64509527 2.866332013 0.788548535 3.204817451 0.26111884 1.134757217 121831577.6 117698472.5 190712748.3 0.2795945 2.26E-11 10.64509527 2.416268916 MEEEGTEDNGLEDDS(ph)R ddPTM_HeLa_A485_30min_R1 2 MEEEGTEDNGLEDDSR 16 0 Q14151;K7ERX3 Q14151 SAFB2 Scaffold attachment factor B2 1 0 MEEEGTEDNGLEDDS(1)R;MEEEGTEDNGLEDDS(1)R ; 408.66 2.24E-152 649190000 359500 424950 322710 300380 252120 285300 296650 272000 265340 314340 TRUE FALSE FALSE 439469.5347 474644.2059 442093.8581 316788.9988 227018.0476 300237.8668 233268.3041 205291.5735 318591.3042 235980.823 1.862310374 2.011367703 1.873431292 1.34243535 0.962019052 1.272297736 0.988505342 0.86995024 1.350072858 1 17.8483101 -5.361948793 2.693324337 1.073724949 1.94419963 0.876488989 0.141189989 0.085239017 1.200424075 0.041064805 0.067796584 4.35E-06 5.361948793 0.870474681 MEEEGTEDNGLEDDS(ph)R ddPTM_HeLa_A486_30min_R1 1 MEEEGTEDNGLEDDSR 16 0 Q14151;K7ERX3 Q14151 SAFB2 Scaffold attachment factor B2 1 0 MEEEGTEDNGLEDDS(1)R 388.94 7.02E-189 0 247270 243760 145510 40288 158310 179050 168510 171390 199210 254070 TRUE FALSE FALSE 229937.6499 224443.5698 201855.3689 93792.50004 138453.2836 156960.6314 126347.0157 132368.2384 216477.6832 190449.2183 1.207343627 1.178495621 1.059890771 0.492480362 0.726982683 0.824160019 0.663415775 0.695031671 1.136668794 1 17.53904684 -5.051299271 7.411570182 0.771448318 1.17577957 0.490878137 0.169350674 0.197023548 25.23628792 0.045421345 0.080201816 8.89E-06 5.051299271 0.404331252 MEEESQS(ph)QGR ddPTM_HeLa_A485_30min_R1 2 MEEESQSQGR 10 0 Q14683;G8JLG1 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 1 0 MEEESQS(1)QGR;MEEESQS(1)QGR ; 175.74 9.21E-08 658790000 354210 445060 401770 331920 465970 374330 424060 422520 380920 438640 TRUE FALSE FALSE 433002.7925 497105.8955 550401.442 350051.9491 419576.3907 393929.34 333456.1167 318896.3075 457367.15 329295.1206 1.31493838 1.509606017 1.671453379 1.063034121 1.274165223 1.196280526 1.01263607 0.968420993 1.388927808 1 18.32902161 -5.271429836 24.99565954 1.1317457 1.499759938 0.568985624 0.147399326 483.2305971 1209019.805 0.041586188 0.062503421 5.35E-06 5.271429836 0.368014238 MEEESQS(ph)QGR ddPTM_HeLa_A486_30min_R1 4 MEEESQSQGR 10 0 Q14683;G8JLG1 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 1 0 MEEESQS(1)QGR;MEEESQS(1)QGR;MEEESQS(1)QGR;MEEES(0.001)QS(0.999)QGR ;;; 166.24 4.11E-07 1085620000 822630 1000900 853930 259347 1025090 847510 867660 907370 915400 811120 TRUE FALSE FALSE 764967.8851 921585.0388 1184594.565 603772.9227 896513.6536 742952.8331 650562.2908 700781.6587 994747.609 608010.2725 1.258149606 1.515739257 1.948313406 0.993030792 1.474504123 1.221941251 1.06998569 1.152581939 1.636070399 1 19.21373617 -5.277009309 24.97547281 1.231806496 1.568234659 0.299713251 0.246780847 1003.128034 1609099.119 0.068809473 0.102456363 5.28E-06 5.277009309 0.336428163 MEGAEINKS(ph)LLALK ddPTM_HeLa_A485_30min_R1 1 MEGAEINKSLLALK 14 1 Q99661-2;Q99661 Q99661-2 KIF2C Kinesin-like protein KIF2C 1 0 MEGAEINKS(1)LLALK 106.94 0.00016411 116530000 118320 94224 67822 123390 160020 136290 199100 239510 102160 177360 TRUE FALSE FALSE 144639.8758 105242.6772 92912.18011 130130.4833 144087.8469 143425.9337 156560.6585 180769.797 122662.5749 133147.4161 1.086313802 0.790422227 0.697814369 0.977341409 1.082167805 1.077196523 1.175844512 1.35766658 0.92125389 1 17.02266491 -5.642859949 2.908972971 1.12588103 0.849714023 0.364684269 0.14218313 0.251874177 4.286561904 0.044657474 0.059950961 2.28E-06 5.642859949 -0.276167007 MEGS(ph)DFESSGGR ddPTM_HeLa_A486_30min_R1 1 MEGSDFESSGGR 12 0 Q8WYH8;E9PEN0;A0A1B0GW41;Q8WYH8-2 Q8WYH8 ING5 Inhibitor of growth protein 5 1 0 MEGS(1)DFESSGGR 162.31 4.88E-07 0 229260 226490 225800 83788 349500 196080 232890 289250 205260 266130 TRUE FALSE FALSE 213190.0579 208542.1075 313235.8071 195062.6984 305662.451 171889.6432 174618.4587 223394.0893 223052.1021 199489.3158 1.068679077 1.045379833 1.570188388 0.977810253 1.53222467 0.861648367 0.875327373 1.119829844 1.11811553 1 17.60595196 -6.29194395 24.92043054 0.994995048 1.232012647 0.273924192 0.198365281 948.9513858 775234.273 0.068769738 0.060656076 5.11E-07 6.29194395 0.2370176 MEHYT(ph)SRDMDELLAEIQK ddPTM_HeLa_A486_30min_R1 4 MEHYTSRDMDELLAEIQK 18 1 H3BUS3;A6NCI4 H3BUS3 VWA3A von Willebrand factor A domain-containing protein 3A 1 0 MEHYT(0.5)S(0.5)RDMDELLAEIQK;MEHY(0.003)T(0.499)S(0.499)RDMDELLAEIQK;MEHY(0.002)T(0.499)S(0.499)RDMDELLAEIQK;MEHY(0.001)T(0.5)S(0.5)RDMDELLAEIQK ;;; 72.644 0.017334 1428550000 695800 229131 159183 1876160 237131 1839790 1256320 975080 537440 3638570 TRUE FALSE FALSE 647028.0131 210973.8251 220822.9207 4367795.296 207387.8188 1612815.415 941975.448 753075.5698 584025.7319 2727448.389 0.237228325 0.077352087 0.080963189 1.601421795 0.076037303 0.591327565 0.345368753 0.276109925 0.214128976 1 21.37912047 -10.73666992 2.536020257 1.129244593 0.398482183 0.152041991 0.432429365 51716773.49 38578934.01 42055979.4 0.113090438 1.83E-11 10.73666992 -0.730762409 MEIGDTLSTAEES(ph)SPPK ddPTM_HeLa_A485_30min_R1 1 MEIGDTLSTAEESSPPK 17 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDT(0.002)LS(0.01)T(0.01)AEES(0.49)S(0.49)PPK 67.93 0.0087828 80849000 118190 76885 64508 233870 128140 91447 146690 98307 104100 291910 TRUE FALSE FALSE 144480.9577 85876.03194 88372.1936 246645.7259 115381.9317 96235.02352 115348.4832 74197.05411 124991.9151 219142.2092 0.659302278 0.391873534 0.403264136 1.125505336 0.526516238 0.43914417 0.526363605 0.338579475 0.570368965 1 17.74150786 -10.12837897 3.055802819 1.000966779 0.549823516 0.285800277 0.211710339 10042774.54 14348514.56 97163.06731 0.056493552 7.44E-11 10.12837897 -0.451143263 MEIGDTLSTAEES(ph)SPPK ddPTM_HeLa_A486_30min_R1 1 MEIGDTLSTAEESSPPK 17 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.59)S(0.41)PPK 135.72 6.75E-06 75264000 129660 133010 72457 89228 126670 161930 191260 191820 118220 267590 TRUE FALSE FALSE 120571.5036 122469.8032 100514.2909 207727.2933 110781.8674 141952.723 143404.7251 148146.7734 128467.4048 200583.7223 0.601103131 0.610567008 0.501108912 1.035613912 0.552297396 0.707698119 0.714937002 0.738578244 0.640467747 1 17.61384501 -14 0.197545876 2.397026738 0.629834397 0.332254286 0.138207339 167.9757073 1.657757622 92.82010484 0.338735825 1.00E-14 14 -1.767192341 MEIGDTLSTAEES(ph)SPPKSR ddPTM_HeLa_A485_30min_R1 1 MEIGDTLSTAEESSPPKSR 19 1 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLS(0.001)T(0.002)AEES(0.593)S(0.402)PPKS(0.002)R 74 0.0021322 127840000 39794 50341 33309 53461 70276 59849 88244 91026 40321 69564 TRUE FALSE FALSE 48646.03801 56227.94204 45631.3852 56381.43906 63279.07469 62982.6011 69389.94851 68701.73078 48413.05485 52222.97503 0.931506449 1.076689752 0.873779887 1.079629014 1.211709495 1.206032423 1.328724541 1.315546093 0.927045133 1 15.67239703 -5.543666545 4.300300634 1.189567799 0.971493115 0.32641236 0.127856778 0.217344911 9.510136772 0.037697767 0.051667663 2.86E-06 5.543666545 -0.218074684 MEIGDTLSTAEES(ph)SPPKSR ddPTM_HeLa_A486_30min_R1 1 MEIGDTLSTAEESSPPKSR 19 1 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.565)S(0.434)PPKSR 124.76 2.81E-06 184530000 62048 58774 42274 42444 80984 68425 92594 96135 50720 95150 TRUE FALSE FALSE 57698.75562 54116.53419 58643.62494 98811.777 70826.23157 59983.41919 69426.00184 74247.15911 55116.45044 71323.82068 0.80896894 0.758744185 0.822216538 1.385396577 0.993023521 0.841001206 0.973391515 1.040986846 0.772763572 1 16.12209637 -5.027706821 24.98356997 1.002911765 0.785512317 0.278803172 0.151384282 884.5367344 797597.413 0.042222521 0.073370327 9.38E-06 5.027706821 -0.217399448 MEIGDTLSTAEESS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 MEIGDTLSTAEESSPPK 17 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.216)S(0.784)PPK 132.08 1.10E-05 266380000 130860 123290 58177 81632 93746 147690 189620 162370 106620 230670 TRUE FALSE FALSE 121687.3898 113520.0514 80704.69243 190043.4215 81987.50253 129469.5094 142175.0704 125401.8955 115861.9074 172908.7306 0.703766602 0.656531634 0.466747354 1.099096736 0.474166355 0.748773697 0.822255012 0.725249067 0.670075519 1 17.39965119 -14 0.217388115 2.439427184 0.671259905 0.213775965 0.168705634 236.9080811 2.369302984 149.3552135 0.322227751 1.00E-14 14 -1.768167279 MEIGDTLSTAEESS(ph)PPKSR ddPTM_HeLa_A485_30min_R1 1 MEIGDTLSTAEESSPPKSR 19 1 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.316)S(0.683)PPKSR 114.78 1.84E-05 176050000 76535 92863 75492 100710 145840 130410 147600 171710 92423 120310 TRUE FALSE FALSE 93559.94671 103722.52 103419.6323 106211.5323 131319.6575 137238.0659 116064.0542 129597.8533 110971.4483 90318.93114 1.035884122 1.148402873 1.145049338 1.175960908 1.453954956 1.519482839 1.285046809 1.434891353 1.228662108 1 16.46274079 -5.608089421 5.735656912 1.349655284 1.120817169 0.308497055 0.140316359 0.217881398 11.41705703 0.04019724 0.05222908 2.47E-06 5.608089421 -0.228838115 MEIGDTLSTAEESS(ph)PPKSR ddPTM_HeLa_A486_30min_R1 1 MEIGDTLSTAEESSPPKSR 19 1 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.386)S(0.613)PPKS(0.001)R 86.959 0.00035614 164800000 89592 84085 63485 43087 92725 83824 97390 91710 70328 96837 TRUE FALSE FALSE 83312.06345 77421.79837 88068.09219 100308.7135 81094.56587 73482.64714 73021.99191 70829.63502 76424.08767 72588.3849 1.147732706 1.066586596 1.213253227 1.381883805 1.117183775 1.012319633 1.005973504 0.975770919 1.052841826 1 16.1474511 -6.103648545 4.159087868 1.008734262 1.198797491 0.58517221 0.076232174 0.185145065 5.524126946 0.028129185 0.028508088 7.88E-07 6.103648545 0.190063229 MEISAELPQT(ph)PQR ddPTM_HeLa_A485_30min_R1 1 MEISAELPQTPQR 13 0 H3BS20;H3BNQ6;A0A087WTJ9;Q8IWV7-2;Q8IWV7 H3BS20 UBR1 E3 ubiquitin-protein ligase UBR1 1 0 MEISAELPQT(1)PQR 205.28 6.75E-22 0 176990 201470 217090 183090 281850 185770 229800 236860 228630 249970 TRUE FALSE FALSE 216360.8149 225030.1639 297400.6249 193091.7431 253788.0244 195496.6299 180701.3527 178769.7136 274513.9439 187657.0794 1.152958448 1.199156273 1.584808982 1.028960611 1.352403145 1.041775938 0.962933844 0.952640392 1.462848856 1 17.51773919 -6.272028691 24.62786032 1.073510698 1.264877126 0.17900403 0.191663983 1015.107535 2360855.938 0.066274324 0.059082543 5.35E-07 6.272028691 0.191366428 MEISAELPQT(ph)PQR ddPTM_HeLa_A486_30min_R1 1 MEISAELPQTPQR 13 0 H3BS20;H3BNQ6;A0A087WTJ9;Q8IWV7-2;Q8IWV7 H3BS20 UBR1 E3 ubiquitin-protein ligase UBR1 1 0 MEISAELPQT(1)PQR 142.54 5.31E-07 180570000 315260 396410 257600 77771 410320 313170 343630 356180 304160 263360 TRUE FALSE FALSE 293161.902 364997.0279 357349.6188 181054.8183 358853.8395 274534.2695 257650.1395 275085.5894 330524.8337 197412.9418 1.485018658 1.848901215 1.81016308 0.917137532 1.817782746 1.390659938 1.305132972 1.393452662 1.674281487 1 17.59085705 -12.37181778 0.11082103 5.86E-12 1.81561646 0.240676611 0.273865026 160.0935596 1.720822814 43.12553675 3.791576586 4.25E-13 12.37181778 1.81561646 MEITIRNS(ph)PYR ddPTM_HeLa_A485_30min_R1 9 MEITIRNSPYR 11 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEITIRNS(0.999)PY(0.001)R;MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEIT(0.017)IRNS(0.98)PY(0.003)R;MEIT(0.383)IRNS(0.617)PYR;MEIT(0.003)IRNS(0.997)PYR ;;;;;;;; 219.84 3.80E-18 15364920000 5462257 8438460 8034370 5507640 9527850 7615800 9065750 10587240 6729740 7366290 TRUE FALSE FALSE 6677317.225 9425264.492 11006617.8 5808508.427 8579223.8 8014551.512 7128778.452 7990702.79 8080337.089 5530009.47 1.207469402 1.704384874 1.990343391 1.050361389 1.551394052 1.449283506 1.28910782 1.444970905 1.461179612 1 22.39885052 -12.39620434 0.1754479 7.49E-18 1.590717746 0.244890458 0.24603942 100.5736862 1.601000386 37.57291957 0.887014603 4.02E-13 12.39620434 1.590717746 MEITIRNS(ph)PYR ddPTM_HeLa_A486_30min_R1 7 MEITIRNSPYR 11 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEIT(0.002)IRNS(0.994)PY(0.004)R;MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEITIRNS(1)PYR;MEITIRNS(1)PYR ;;;;;; 196.74 1.15E-12 12957848000 4582794 4824060 4374459 1767945 5688806 4327285 5117745 5305334 3955515 4879810 TRUE FALSE FALSE 4261563.806 4441783.917 6068366.677 4115865.307 4975262.905 3793428.573 3837231.071 4097425.263 4298382.225 3657873.814 1.165038496 1.214307585 1.65898743 1.125207024 1.360151596 1.037058348 1.0490332 1.120165832 1.17510402 1 21.80257388 -6.262312011 24.99957401 1.082080197 1.309421028 0.384369813 0.144415419 88.25909632 2528464.316 0.049674987 0.046340523 5.47E-07 6.262312011 0.227340831 MEITIRNS(ph)PYRR ddPTM_HeLa_A485_30min_R1 5 MEITIRNSPYRR 12 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEIT(0.002)IRNS(0.968)PY(0.03)RR;MEITIRNS(1)PYRR;MEITIRNS(1)PYRR;MEITIRNS(1)PYRR;MEITIRNS(0.992)PY(0.008)RR ;;;; 259.29 1.01E-33 5967030000 1145520 1875160 1848310 1257220 2304440 1794970 2279540 2741960 1584660 1649600 TRUE FALSE FALSE 1400336.972 2094443.65 2532076.784 1325898.745 2075001.862 1888951.854 1792497.657 2069490.011 1902686.727 1238385.079 1.130776683 1.691270096 2.044660282 1.070667572 1.675570788 1.525334798 1.447447719 1.67111995 1.536425753 1 20.24002856 -8.092487503 19.53227246 1 1.544782423 0.263375697 0.266541025 11942.21939 2522059.246 0.249658747 0.064461611 8.08E-09 8.092487503 0.544782423 MEITIRNS(ph)PYRR ddPTM_HeLa_A486_30min_R1 7 MEITIRNSPYRR 12 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEIT(0.004)IRNS(0.994)PY(0.002)RR;MEITIRNS(0.976)PY(0.024)RR;MEITIRNS(1)PYRR;MEITIRNS(1)PYRR;MEITIRNS(1)PYRR;MEIT(0.229)IRNS(0.771)PYRR;MEIT(0.207)IRNS(0.793)PYRR ;;;;;; 247.9 1.50E-28 4987252000 1594226 1578423 1553060 697725 2226705 1468544 1915401 2025236 1329401 1727585 TRUE FALSE FALSE 1482478.99 1453343.013 2154446.424 1624339.061 1947410.896 1287369.972 1436147.411 1564133.973 1444634.549 1294986.471 1.14478338 1.122284321 1.663682573 1.254328981 1.503807908 0.994118472 1.109005725 1.20783808 1.115559568 1 20.3045056 -6.270159671 24.99747882 1.099775584 1.339275411 0.380645612 0.160489748 769.421889 2205608.254 0.057447966 0.051422289 5.37E-07 6.270159671 0.239499827 MEKAPIDTS(ph)DVEEK ddPTM_HeLa_A485_30min_R1 1 MEKAPIDTSDVEEK 14 1 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 0 MEKAPIDT(0.009)S(0.991)DVEEK 203.23 3.36E-22 436490000 689190 1129800 384780 576380 745270 1221500 1574400 2314100 467310 772810 TRUE FALSE FALSE 842497.9378 1261920.282 527126.134 607866.1799 671068.302 1285455.851 1238016.578 1746563.347 561094.8306 580162.6895 1.452175317 2.175114506 0.908583305 1.047751244 1.156689863 2.215681695 2.133912781 3.01047168 0.9671336 1 19.14609799 -6.260824657 24.99978894 2.007873991 1.352910645 0.119609753 0.646385871 95.62449052 3888953.179 0.217676077 0.205260993 5.48E-07 6.260824657 -0.654963346 MEKAPIDTS(ph)DVEEK ddPTM_HeLa_A486_30min_R1 2 MEKAPIDTSDVEEK 14 1 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 0 MEKAPIDT(0.099)S(0.901)DVEEK;MEKAPIDT(0.192)S(0.808)DVEEK ; 112.44 0.0001132 459900000 585240 397100 153821 204984 347480 365550 523290 496530 212523 846210 TRUE FALSE FALSE 544217.6982 365632.3498 213384.6107 477213.1113 303895.8183 320452.1576 392357.3072 383480.9582 230944.6648 634313.5081 0.85796328 0.57642214 0.336402438 0.752330047 0.479094035 0.505195228 0.618554236 0.604560605 0.364085995 1 19.27483654 -10.91514128 2.845279376 1.250380209 0.563423022 0.425083788 0.151365785 123035326.9 70586945.98 205268483.3 0.037579503 1.22E-11 10.91514128 -0.686957187 MELAGSNTTASS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 MELAGSNTTASSPAR 15 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 MELAGSNTTAS(0.004)S(0.996)PAR;MELAGSNTTAS(0.027)S(0.973)PAR ; 214.54 8.30E-26 236620000 346950 440840 420350 321830 560790 391160 439510 518660 374890 490980 TRUE FALSE FALSE 424127.8305 492392.4032 575854.9572 339410.758 504955.7785 411640.5328 345605.098 391457.8218 450126.9843 368587.7218 1.150683556 1.335889326 1.562328106 0.920841194 1.369974496 1.116804789 0.9376468 1.062047916 1.221220778 1 18.49164849 -5.928032419 1.058088621 1.062602958 1.312538392 0.238546353 0.170958182 0.738954232 1.77288259 0.08154053 0.103266165 1.18E-06 5.928032419 0.249935434 MELAGSNTTASS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 MELAGSNTTASSPAR 15 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 MELAGSNTTAS(0.042)S(0.958)PAR 161.24 7.56E-08 0 210050 232980 183840 89492 253030 187900 207250 222360 183980 199210 TRUE FALSE FALSE 195326.5797 214517.8163 255027.7714 208341.8987 221292.618 164718.8084 155393.8579 171733.4821 199927.5345 149326.5194 1.308050174 1.436568784 1.707853183 1.395210305 1.48193783 1.103078068 1.040631353 1.150053472 1.338861546 1 17.18811088 -6.259449541 24.59713746 1.130534873 1.473805188 0.643189989 0.126309102 94.53038371 1168530.334 0.043884362 0.041804888 5.50E-07 6.259449541 0.343270314 MELGAPEEMGQVPPLDS(ph)RPS(ph)SPALYFTHDASLVHK ddPTM_HeLa_A486_30min_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 2 0 MELGAPEEMGQVPPLDS(0.948)RPS(0.554)S(0.485)PALY(0.006)FT(0.007)HDASLVHK 133.71 4.84E-06 125210000 29122 38120 33339 7017.8 47864 36191 46296 41639 35708 29898 TRUE FALSE FALSE 27080.69819 35099.23237 46248.75365 16337.79306 41860.45081 31726.12238 34712.25113 32158.70867 38803.19819 22411.3462 1.20834768 1.566136727 2.063631218 0.728996505 1.867824023 1.415627696 1.548869525 1.434929807 1.731408629 1 14.45194169 -10.14178554 5.55791107 0.999991345 1.509509733 0.161348111 0.346945264 3.49E-05 5.40E-06 0.31546979 0.076511364 7.21E-11 10.14178554 0.509518388 MELGAPEEMGQVPPLDS(ph)RPSSPALYFTHDASLVHK ddPTM_HeLa_A485_30min_R1 2 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 MELGAPEEMGQVPPLDS(0.272)RPS(0.272)S(0.272)PALY(0.058)FT(0.062)HDAS(0.062)LVHK;MELGAPEEMGQVPPLDS(0.331)RPS(0.331)S(0.331)PALY(0.001)FT(0.007)HDAS(0.001)LVHK ; 97.274 5.99E-05 239390000 134239 192389 158935 127594 236896 176608 214109 212916 170788 215640 TRUE FALSE FALSE 164100.0024 214887.22 217731.6703 134564.1371 213309.8024 185854.9218 168362.863 160698.0172 205063.585 161884.9166 1.01368309 1.3274073 1.344978118 0.831233323 1.317663233 1.148068182 1.040015751 0.992668252 1.266724469 1 17.30460904 -8.366584353 0.111512722 0.8668934 1.294353018 0.057263484 0.164213457 47.02824723 2.661910875 5.819064971 3.695305972 4.30E-09 8.366584353 0.427459618 MELGAPEEMGQVPPLDS(ph)RPSSPALYFTHDASLVHK ddPTM_HeLa_A486_30min_R1 2 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 MELGAPEEMGQVPPLDS(0.331)RPS(0.331)S(0.331)PALYFT(0.006)HDASLVHK;MELGAPEEMGQVPPLDS(0.169)RPS(0.169)S(0.169)PALY(0.155)FT(0.169)HDAS(0.169)LVHK ; 178.81 5.39E-21 449500000 190036 243358 158264 31118.1 257903 178078 221717 205982 197139 175514 TRUE FALSE FALSE 176715.4577 224073.4258 219548.0593 72444.50942 225554.4009 156108.5469 166241.0615 159084.3952 214227.1672 131564.152 1.343188513 1.703149546 1.668752893 0.550640188 1.714406223 1.186558379 1.26357415 1.209177369 1.628309566 1 17.00540692 MELGAPEEMGQVPPLDSRPS(ph)S(ph)PALYFTHDASLVHK ddPTM_HeLa_A485_30min_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 2 0 MELGAPEEMGQVPPLDS(0.589)RPS(0.692)S(0.66)PALY(0.033)FT(0.024)HDAS(0.001)LVHK 93.975 0.00024935 95750000 19977 26234 30229 20814 35747 22983 38649 29431 22491 26425 TRUE FALSE FALSE 24420.81473 29301.83809 41411.96503 21951.01612 32187.90316 24186.35434 30391.32542 22213.0011 27004.7374 19837.73382 1.231028451 1.477075878 2.087535069 1.106528413 1.622559485 1.219209541 1.531995827 1.11973481 1.361281367 1 14.27595961 -7.673606661 0.447657727 0.998408874 1.539675251 0.230500445 0.267096526 1.448905 0.787311881 0.31253896 0.193360753 2.12E-08 7.673606661 0.541266378 MELGAPEEMGQVPPLDSRPS(ph)SPALYFTHDASLVHK ddPTM_HeLa_A485_30min_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 MELGAPEEMGQVPPLDS(0.095)RPS(0.452)S(0.452)PALYFT(0.001)HDASLVHK 153.24 6.20E-10 209400000 60272 84734 66502 46216 90880 77176 82084 91684 63856 89971 TRUE FALSE FALSE 73679.29846 94642.90421 91103.85718 48740.66305 81831.6681 81216.81602 64546.08284 69198.35525 76671.31348 67542.88549 1.0908521 1.401226843 1.348829807 0.721625419 1.211551261 1.202448125 0.955631113 1.024509906 1.135150104 1 16.04351619 MELGAPEEMGQVPPLDSRPS(ph)SPALYFTHDASLVHK ddPTM_HeLa_A486_30min_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 MELGAPEEMGQVPPLDS(0.074)RPS(0.337)S(0.337)PALY(0.08)FT(0.086)HDAS(0.086)LVHK 62.666 0.0059049 261040000 152750 164800 122850 19310 201020 151640 173490 168870 149470 137600 TRUE FALSE FALSE 142043.0138 151740.6478 170420.81 44954.65587 175806.1972 132932.1986 130080.967 130421.9874 162426.1799 103144.0644 1.377132215 1.471152497 1.652259983 0.435843363 1.704472266 1.288801245 1.261158049 1.264464302 1.574750626 1 16.65430128 -11.25815551 1.872946202 0.000101667 1.328478119 0.081913337 0.337132164 4975648.621 742060.2515 21016300.52 0.082173874 5.52E-12 11.25815551 1.328376452 MELS(ph)LENVTVEGNACK ddPTM_HeLa_A485_30min_R1 1 MELSLENVTVEGNACK 16 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 MELS(1)LENVTVEGNACK 176.21 1.00E-12 24479000 157430 114330 123630 260810 222460 116220 175530 125700 164740 385080 TRUE FALSE FALSE 192449.7604 127699.899 169365.8817 275057.3899 200311.1013 122305.0995 138026.5816 94871.87791 197801.8069 289086.6429 0.665716542 0.441735729 0.585865469 0.951470421 0.692910261 0.423074198 0.477457485 0.328178006 0.684230184 1 18.14114243 -8.018629155 23.98643242 1.000000018 0.571379562 0.378613324 0.165866946 880.4151506 1133600.935 0.174863802 0.04514964 9.58E-09 8.018629155 -0.428620456 MENGVLGNALEGVHVEEEEGEKT(ph)EDESLVENNDNIDEEAR ddPTM_HeLa_A485_30min_R1 4 MENGVLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAR 40 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(0.999)EDES(0.001)LVENNDNIDEEAR ;;; 379.09 1.34E-172 1430380000 225282 221395 137534 290257 181627 227233 306303 295537 148316 333699 TRUE FALSE FALSE 275395.2037 247285.2194 188413.5499 306113.0049 163543.5781 239130.5685 240858.8618 223056.0874 178081.6608 250513.9806 1.099320697 0.987111453 0.752107924 1.221939806 0.65283214 0.954559773 0.961458763 0.890393769 0.71086516 1 17.93453159 -4.52443218 24.95507307 0.895095848 1.071268443 0.147810533 0.154809265 75.23203904 1208590.996 0.037317211 0.100387106 2.99E-05 4.52443218 0.176172595 MENGVLGNALEGVHVEEEEGEKT(ph)EDESLVENNDNIDEEAR ddPTM_HeLa_A486_30min_R1 7 MENGVLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAR 40 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(0.999)EDES(0.001)LVENNDNIDEEAR;MENGVLGNALEGVHVEEEEGEKT(1)EDESLVENNDNIDEEAR ;;;;;; 340.72 2.20E-130 2798640000 429694 346940 147746 195725 210221 337771 397844 353277 255888 767721 TRUE FALSE FALSE 399574.6695 319447.2109 204957.208 455657.6914 183853.1219 296100.2482 298299.2232 272843.5391 278068.5779 575478.6646 0.694334463 0.55509827 0.356150837 0.791789026 0.319478607 0.514528629 0.518349752 0.47411582 0.483195286 1 19.13440292 -10.16330232 5.561574284 1.000010682 0.519136265 0.537483616 0.13270082 1.67E-05 2.51E-06 0.121955971 0.029578011 6.87E-11 10.16330232 -0.480874417 MENGVLGNALEGVHVEEEEGEKT(ph)EDESLVENNDNIDEEAREELR ddPTM_HeLa_A485_30min_R1 1 MENGVLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAREELR 44 2 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 MENGVLGNALEGVHVEEEEGEKT(0.947)EDES(0.053)LVENNDNIDEEAREELR 58.743 0.0049054 30350000 5431.4 3134.6 6151.2 12911 13090 6193 12137 10142 7149.1 17124 TRUE FALSE FALSE 6639.596192 3501.164203 8426.784853 13616.29524 11786.71364 6517.255904 9543.8308 7654.658598 8583.858795 12855.30194 0.516486989 0.272351767 0.655510457 1.059196843 0.916875674 0.50697027 0.74240425 0.595447593 0.667729069 1 13.65007588 -4.924177646 5.886863612 0.766550213 0.401101044 0.438831379 0.173299023 0.196202933 11.48277979 0.04780384 0.101710412 1.19E-05 4.924177646 -0.365449169 MENGVLGNALEGVHVEEEEGEKTEDES(ph)LVENNDNIDEEAR ddPTM_HeLa_A485_30min_R1 1 MENGVLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAR 40 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 MENGVLGNALEGVHVEEEEGEKT(0.008)EDES(0.992)LVENNDNIDEEAR 148.59 1.47E-10 165840000 19909 19917 15414 30779 20948 22028 33819 33106 14069 37779 TRUE FALSE FALSE 24337.68836 22246.1199 21116.28003 32460.37883 18862.34357 23181.35202 26593.29437 24986.70159 16892.51925 28361.39057 0.858127471 0.784380436 0.744543184 1.144527055 0.665071183 0.817355974 0.937658339 0.881011159 0.595616749 1 14.79164065 MENGVLGNALEGVHVEEEEGEKTEDES(ph)LVENNDNIDEEAR ddPTM_HeLa_A486_30min_R1 1 MENGVLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAR 40 1 P49321;P49321-3;P49321-4;E9PPR5;E9PNB5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 MENGVLGNALEGVHVEEEEGEKT(0.225)EDES(0.775)LVENNDNIDEEAR 122.15 6.51E-07 92795000 39912 35201 17675 16539 22780 29599 41902 38004 29410 68381 TRUE FALSE FALSE 37114.37491 32411.54456 24519.23335 38503.62783 19922.71998 25947.37632 31417.67641 29351.31882 31959.28248 51257.95251 0.72407057 0.632322264 0.478349839 0.751173739 0.388675689 0.50621172 0.612932723 0.572619806 0.623499007 1 15.64548823 -8.453919707 2.024988664 1.000001122 0.578637445 0.59144765 0.103186111 2.535480053 10.46898209 0.098586218 0.027222882 3.52E-09 8.453919707 -0.421363676 MEPQS(ph)PGEVKK ddPTM_HeLa_A486_30min_R1 1 MEPQSPGEVKK 11 1 Q03112-8;Q03112;Q03112-3;E7EUL6;A0A0C3SFZ7;Q03112-5;Q03112-6;Q03112-1;Q03112-4;H9KVD4 Q03112-8 MECOM MDS1 and EVI1 complex locus protein EVI1 1 0 MEPQS(1)PGEVKK 72.175 0.0071598 192510000 233320 208310 90337 137860 169290 237430 314830 301810 174020 472130 TRUE FALSE FALSE 216965.4729 191802.7569 125317.9057 320945.0471 148056.0696 208138.3006 236056.2041 233094.4515 189104.1937 353905.5749 0.613060342 0.541960259 0.354099835 0.906866322 0.418349074 0.588118174 0.66700335 0.658634585 0.534335165 1 18.43300496 -14 0.282076687 4.050877759 0.561972832 0.430622396 0.142287005 217.0578738 2.076470702 388.010597 0.156113537 1.00E-14 14 -3.488904927 MEREDS(ph)S(ph)EEEEEEIDDEEIER ddPTM_HeLa_A485_30min_R1 3 MEREDSSEEEEEEIDDEEIER 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER ;; 246.36 1.28E-46 9259300000 602830 817770 866620 693860 1065100 834290 1021470 1139800 777600 877170 TRUE FALSE FALSE 736927.4538 913401.0878 1187218.801 731763.8149 959054.9042 877972.1343 803224.5899 860262.2629 933657.1874 658507.6621 1.119087136 1.387077388 1.802892919 1.11124571 1.456406598 1.333275503 1.219764987 1.306381554 1.417838001 1 19.3288407 -12.52334211 0.277489747 7.96E-12 1.38294589 0.232419458 0.188396717 132.9876341 2.715887966 76.35175875 0.22474069 3.00E-13 12.52334211 1.38294589 MEREDS(ph)S(ph)EEEEEEIDDEEIER ddPTM_HeLa_A486_30min_R1 4 MEREDSSEEEEEEIDDEEIER 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER ;;; 252.77 1.18E-58 8721610000 1088220 1252720 1154280 475809 1495910 1135400 1298600 1377900 1018470 1209670 TRUE FALSE FALSE 1011941.398 1153449.905 1601248.129 1107707.398 1308279.019 995325.8919 973676.5448 1064182.249 1106751.8 906760.7584 1.11599602 1.272055384 1.765899234 1.221609325 1.442805069 1.097671996 1.073796518 1.173608628 1.220555466 1 19.79036243 -6.267941011 24.6652457 1.121518923 1.373036615 0.351133295 0.169864804 525.6816389 1994272.883 0.060321265 0.05445618 5.40E-07 6.267941011 0.251517692 MEREDS(ph)S(ph)EEEEEEIDDEEIERR ddPTM_HeLa_A485_30min_R1 2 MEREDSSEEEEEEIDDEEIERR 22 2 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 MEREDS(1)S(1)EEEEEEIDDEEIERR;MEREDS(1)S(1)EEEEEEIDDEEIERR ; 151.53 3.97E-09 2212480000 585400 903810 938050 706700 1233210 969410 1150120 1395460 898050 945940 TRUE FALSE FALSE 715620.2104 1009502.717 1285073.731 745305.2315 1110427.282 1020166.809 904387.4664 1053221.247 1078280.398 710134.5667 1.007724795 1.421565383 1.809620022 1.049526761 1.563685721 1.436582384 1.273543788 1.483129109 1.518416999 1 19.43773291 -10.28106233 7.002599073 0.99999627 1.403795237 0.215928705 0.22592585 1.27E-05 1.30E-06 0.210931844 0.051158014 5.24E-11 10.28106233 0.403798967 MEREDS(ph)S(ph)EEEEEEIDDEEIERR ddPTM_HeLa_A486_30min_R1 2 MEREDSSEEEEEEIDDEEIERR 22 2 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 MEREDS(1)S(1)EEEEEEIDDEEIERR;MEREDS(1)S(1)EEEEEEIDDEEIERR ; 157.73 1.04E-09 2232900000 1190270 1196470 1280690 529540 1764240 1215420 1489210 1622350 1142410 1379000 TRUE FALSE FALSE 1106838.22 1101657.36 1776607.466 1232795.881 1542952.568 1065473.838 1116593.907 1252976.321 1241435.019 1033689.424 1.070764771 1.065752763 1.718705275 1.192617292 1.492665526 1.030748514 1.080202506 1.212140021 1.200974867 1 19.97937136 -6.280242839 24.93147914 1.116533767 1.311032918 0.217242012 0.192257804 1406.581169 1864977.577 0.069182648 0.061109359 5.25E-07 6.280242839 0.194499151 MES(ph)EGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_A485_30min_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK 250.36 1.79E-52 224520000 41206 30320 16577 61530 23894 33912 50649 44516 21471 64170 TRUE FALSE FALSE 50372.13254 33865.66025 22709.52213 64891.2281 21515.02946 35687.57988 39827.42739 33598.3812 25780.03276 48173.59996 1.045637706 0.702992101 0.471410111 1.347028832 0.446614525 0.740811978 0.826747999 0.697443854 0.535148562 1 15.55595512 MES(ph)EGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_A486_30min_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 MES(1)EGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK 173.87 3.09E-15 437100000 118040 82529 20638 59829 50153 99202 109070 100620 57219 237660 TRUE FALSE FALSE 109766.0056 75989.10147 28629.5863 139284.9356 43862.34308 86963.46585 81779.53238 77711.02252 62178.78899 178148.3891 0.616149302 0.426549473 0.1607064 0.781847853 0.246212404 0.488151851 0.459052887 0.436215129 0.349028073 1 17.44271991 -10.35748575 3.005642464 1.00652252 0.437955178 0.506374056 0.165726725 20058476.38 25172749.3 1159304.438 0.040598538 4.39E-11 10.35748575 -0.568567342 MES(ph)EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_A485_30min_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MES(0.795)EGGADDS(0.205)AEEGDLLDDDDNEDRGDDQLELIKDDEK 65.3 0.0043979 483800000 40672 32584 14775 55147 20834 26850 48248 39356 16612 56555 TRUE FALSE FALSE 49719.34608 36394.41536 20240.88734 58159.54097 18759.69381 28255.82448 37939.42065 29703.87929 19945.87603 42456.87932 1.171055124 0.857208913 0.476739875 1.369849643 0.441852866 0.665518167 0.8935989 0.699624649 0.469791382 1 15.37371071 -4.322525717 3.850933028 0.750164238 1.189642628 0.177069342 0.269747806 0.3662555 9.683798043 0.065392481 0.394240653 4.76E-05 4.322525717 0.43947839 MES(ph)EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_A486_30min_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MES(0.5)EGGADDS(0.5)AEEGDLLDDDDNEDRGDDQLELIKDDEK 58.001 0.014025 1195900000 200800 171090 38534 94535 65058 144860 183730 143940 80494 387160 TRUE FALSE FALSE 186724.9569 157532.2053 53455.39678 220082.2575 56897.819 126988.646 137758.8107 111168.0042 87471.28473 290212.616 0.643407442 0.54281653 0.184193911 0.758348347 0.196055636 0.437571074 0.474682364 0.383057104 0.301404143 1 18.14675071 -10.13085963 4.825525803 1.000031205 0.433568665 0.487036955 0.173716635 82890248.45 174022394.6 20751.51161 0.039975913 7.40E-11 10.13085963 -0.56646254 MES(ph)HS(ph)EDEDLAGAVGGLGWNSR ddPTM_HeLa_A485_30min_R1 3 MESHSEDEDLAGAVGGLGWNSR 22 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2;K7EIM4 K7ESM2 HEXIM2 Protein HEXIM2 2 0 MES(1)HS(1)EDEDLAGAVGGLGWNSR;MES(1)HS(1)EDEDLAGAVGGLGWNSR;MES(1)HS(1)EDEDLAGAVGGLGWNSR ;; 213.47 1.09E-27 167380000 84575 131630 133338 107110 149310 108815 122206 133856 97032 125986 TRUE FALSE FALSE 103388.417 147022.9835 182665.2749 112961.1481 134444.1721 114512.3851 96095.68977 101027.6061 116505.4324 94580.0088 1.093131818 1.554482658 1.931330703 1.194344868 1.421486145 1.210746188 1.016025384 1.068170826 1.231818794 1 16.52924766 -6.17828595 1.431029116 1.082516082 1.496541829 0.378085865 0.21759258 0.437346858 1.806401463 0.098993136 0.095748561 6.63E-07 6.17828595 0.414025747 MES(ph)HS(ph)EDEDLAGAVGGLGWNSR ddPTM_HeLa_A486_30min_R1 4 MESHSEDEDLAGAVGGLGWNSR 22 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2;K7EIM4 K7ESM2 HEXIM2 Protein HEXIM2 2 0 MES(1)HS(1)EDEDLAGAVGGLGWNSR;MES(1)HS(1)EDEDLAGAVGGLGWNSR;MES(1)HS(1)EDEDLAGAVGGLGWNSR;MES(1)HS(1)EDEDLAGAVGGLGWNSR ;;; 212.94 1.39E-27 237355000 137265 149453 121538 71730.7 159969 152190 169671 171777 132955 165851 TRUE FALSE FALSE 127643.4323 137609.8 168600.7685 166992.6947 139904.1964 133414.3452 127217.5212 132667.127 144479.6465 124320.8301 1.02672603 1.106892545 1.356174733 1.343239862 1.125347991 1.073145547 1.023300127 1.067135144 1.162151559 1 16.92370852 -5.991568388 24.82630125 1.070340317 1.214422186 0.313437379 0.099543074 237.8945579 700457.9838 0.033808356 0.03827317 1.02E-06 5.991568388 0.144081869 MES(ph)HSEDEDLAGAVGGLGWNSR ddPTM_HeLa_A485_30min_R1 1 MESHSEDEDLAGAVGGLGWNSR 22 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2;K7EIM4 K7ESM2 HEXIM2 Protein HEXIM2 1 0 MES(0.559)HS(0.441)EDEDLAGAVGGLGWNSR 173.35 2.25E-14 74593000 49834 65957 61784 52723 74090 65759 71701 75271 64008 77400 TRUE FALSE FALSE 60919.40137 73670.0974 84640.47265 55603.12399 66713.33945 69202.03956 56381.49561 56810.66923 76853.81848 58105.60444 1.048425569 1.267865606 1.456666245 0.956932202 1.148139497 1.190970135 0.970328011 0.977714108 1.322657586 1 15.8263897 -5.276587032 24.98285872 1.082807356 1.258673813 0.243693575 0.142612507 1124.982566 1855418.803 0.040170176 0.059840374 5.29E-06 5.276587032 0.175866457 MESAECLEMTYVPNIDRIS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 MESAECLEMTYVPNIDRISPEK 22 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 MESAECLEMTYVPNIDRIS(1)PEK 166.79 3.43E-14 66101000 60522 55371 47374 101650 72810 59400 93658 73408 51525 141980 TRUE FALSE FALSE 73984.9101 61846.15679 64899.614 107202.8821 65560.78075 62510.09215 73647.20318 55404.5729 61865.59488 106586.9989 0.694126965 0.580241093 0.608888651 1.00577822 0.615091722 0.58647014 0.690958596 0.519806106 0.580423462 1 16.70167195 -10.21120503 4.934464268 1.000044277 0.654487923 0.397557474 0.127945824 6.47E-05 1.03E-05 0.128666345 0.031202182 6.15E-11 10.21120503 -0.345556354 MESAECLEMTYVPNIDRIS(ph)PEK ddPTM_HeLa_A486_30min_R1 2 MESAECLEMTYVPNIDRISPEK 22 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 MESAECLEMTYVPNIDRIS(1)PEK;MESAECLEMTYVPNIDRIS(1)PEK ; 189.39 4.60E-20 214904000 89804 89207 47950 55936 89482 103002 132114 116668 75969 144091 TRUE FALSE FALSE 83509.20335 82137.91243 66517.52415 130221.8348 78258.33317 90294.66049 99057.67984 90105.24324 82554.05409 108009.6757 0.773164097 0.760468096 0.615847828 1.205649716 0.724549284 0.835986775 0.917118575 0.834233069 0.764320914 1 16.72080103 -8.44702271 0.02466631 1.786311561 4.11E-06 0.108448544 0.147881525 910.9469862 9.97083234 380.6272768 339.1333659 3.57E-09 8.44702271 -1.78630745 MESEGGADDS(ph)AEEGDLLDDDDNEDR ddPTM_HeLa_A485_30min_R1 1 MESEGGADDSAEEGDLLDDDDNEDR 25 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MESEGGADDS(1)AEEGDLLDDDDNEDR 274.46 2.77E-75 283880000 228260 285540 233980 244060 259990 201570 226770 228320 197100 290220 TRUE FALSE FALSE 279035.6495 318931.4191 320538.9387 257392.3798 234104.4827 212123.8935 178318.737 172324.162 236656.1621 217873.4951 1.280723244 1.463837623 1.471215847 1.181384545 1.074497302 0.973610367 0.818450803 0.790936786 1.08620905 1 17.73313117 -5.715373755 1.582563328 0.913767942 1.412713191 0.807649815 0.098955747 0.151994564 0.788875614 0.036338685 0.051287897 1.93E-06 5.715373755 0.49894525 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIK ddPTM_HeLa_A486_30min_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIK 34 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIK 175.39 3.74E-15 416640000 106630 91094 60472 41666 65569 87470 84006 74110 75019 142730 TRUE FALSE FALSE 99155.78764 83875.37968 83888.3779 97000.55368 57344.72461 76678.84073 62986.81028 57236.77081 81521.70732 106989.479 0.926780732 0.783959138 0.784080628 0.906636378 0.535984708 0.71669515 0.588719665 0.534975694 0.761960037 1 16.70710941 -5.749031645 24.99904451 0.662769802 0.840886465 0.238652992 0.135103162 284.8504039 573912.5452 0.037707871 0.048329137 1.78E-06 5.749031645 0.178116664 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_A485_30min_R1 12 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MES(0.003)EGGADDS(0.997)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.016)EGGADDS(0.984)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.002)EGGADDS(0.998)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.003)EGGADDS(0.997)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.001)EGGADDS(0.999)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK ;;;;;;;;;;; 385.57 2.51E-195 1.02E+11 4261333 3620828 1447798 5797913 2291131 3482227 5066686 4550732 1957819 6694362 TRUE FALSE FALSE 5209251.824 4044252.338 1983398.728 6114638.306 2063017.953 3664551.021 3984147.145 3434657.842 2350735.315 5025580.754 1.036547233 0.80473333 0.394660602 1.216702826 0.410503393 0.729179611 0.79277348 0.683435012 0.467753963 1 22.26085889 -4.346198311 4.100641987 0.705834432 1.041434204 0.135234351 0.244831757 0.390016628 10.88868787 0.057723622 0.304380358 4.51E-05 4.346198311 0.335599771 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_A486_30min_R1 13 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V5V7 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.043)EGGADDS(0.957)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MES(0.008)EGGADDS(0.992)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIKDDEK ;;;;;;;;;;;; 350.98 3.97E-150 89761350000 14794630 9631312 2590231 6219943 4615083 10866015 12740594 10549294 6677406 25156559 TRUE FALSE FALSE 13757602.84 8868091.76 3593237.812 14480341.64 4036216.256 9525476.547 9552762.625 8147450.046 7256208.928 18857192.88 0.729567912 0.470276346 0.190549985 0.767894868 0.214041203 0.505137568 0.506584553 0.432060599 0.384797937 1 24.16861159 -10.30701691 3.315849845 1.002653221 0.461449354 0.451034002 0.17639631 98741468.07 141658195.9 2657870.414 0.042104322 4.93E-11 10.30701691 -0.541203867 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQVK ddPTM_HeLa_A485_30min_R1 6 MESEGGADDSAEEGDLLDDDDNEDRGDDQVK 31 1 B4DY08 B4DY08 HNRNPC 1 0 MES(0.048)EGGADDS(0.952)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MES(0.001)EGGADDS(0.999)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK ;;;;; 290.48 1.22E-92 18674760000 1970200 1863840 1466126 2592720 2443730 2189760 3083370 3125030 1749320 3716360 TRUE FALSE FALSE 2408464.193 2081799.875 2008507.018 2734353.728 2200423.661 2304412.448 2424582.811 2358611.493 2100392.478 2789939.847 0.863267427 0.746180918 0.71991051 0.980076231 0.78869932 0.825972091 0.869044834 0.84539869 0.752845077 1 21.41180259 -11.68006473 2.250749784 7.039947636 0.822043174 0.358086423 0.071784619 1937126.782 319016.2177 59897570.46 0.017830004 2.09E-12 11.68006473 -6.217904462 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQVK ddPTM_HeLa_A486_30min_R1 6 MESEGGADDSAEEGDLLDDDDNEDRGDDQVK 31 1 B4DY08 B4DY08 HNRNPC 1 0 MES(0.005)EGGADDS(0.995)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK;MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQVK ;;;;; 382.26 3.25E-193 3865000000 1359593 1289819 748547 659249 1331794 1424204 1752034 1637735 1056147 1712449 TRUE FALSE FALSE 1264292.552 1187609.045 1038404.445 1534764.989 1164747.978 1248500.191 1313656.562 1264858.492 1147694.672 1283640.624 0.984927189 0.925188112 0.808952619 1.195634479 0.907378558 0.972624399 1.023383443 0.985368076 0.894093448 1 20.29180992 MESLSSHRIDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_HeLa_A485_30min_R1 3 MESLSSHRIDEDGENTQIEDTEPMSPVLNSK 31 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK;MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK;MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK ;; 354.79 4.44E-148 2706600000 271029 736000 541680 167884 842660 721550 980030 1560860 522651 325170 TRUE FALSE FALSE 331318.466 822068.7977 742069.9732 177055.0778 758761.8116 759329.2423 770638.5844 1178056.638 627542.2617 244111.1033 1.357244556 3.367601008 3.039886196 0.725305303 3.108264234 3.110588711 3.156917379 4.82590354 2.570723958 1 17.89717839 -5.955909815 24.99830222 3.177454721 2.231947503 0.096631595 1.1317799 272.5159803 154510.1874 0.34425461 0.390347836 1.11E-06 5.955909815 -0.945507218 MESLSSHRIDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_HeLa_A486_30min_R1 4 MESLSSHRIDEDGENTQIEDTEPMSPVLNSK 31 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK;MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK;MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK;MESLSSHRIDEDGENTQIEDTEPMS(1)PVLNSK ;;; 212.77 5.85E-30 2270350000 912913 657470 577609 34782 1267816 511278 821455 981138 504828 494411 TRUE FALSE FALSE 848922.513 605369.6827 801274.6737 80974.25378 1108794.695 448201.7187 615918.2705 757754.2955 548586.8975 370607.2675 2.29062565 1.63345335 2.162058718 0.218490734 2.991832035 1.2093711 1.661916332 2.044628808 1.48023783 1 18.49953165 -11.34130251 0.349601485 1.99E-08 1.771412067 0.098227197 0.692651064 129.5747041 5.765353246 101.0978441 0.519373087 4.56E-12 11.34130251 1.771412047 MESMNRPYTSLVPPLS(ph)PQPK ddPTM_HeLa_A485_30min_R1 3 MESMNRPYTSLVPPLSPQPK 20 1 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 MESMNRPYTSLVPPLS(1)PQPK;MESMNRPYTSLVPPLS(1)PQPK;MESMNRPYTSLVPPLS(0.999)PQPK ;; 160.69 1.47E-13 997960000 760769 722586 513372 930860 896683 777888 1165970 1156310 636648 1260580 TRUE FALSE FALSE 929999.4394 807086.147 703289.666 981710.5247 807406.0921 818617.0128 916850.9844 872723.1595 764417.4139 946340.6053 0.982732258 0.852849537 0.743167589 1.037375464 0.853187624 0.865034226 0.968838259 0.922208299 0.807761402 1 19.852 -10.5406141 2.712215662 1.006078034 0.89241544 0.130514031 0.083182836 22562258.6 22563740.32 1005825.166 0.021010193 2.88E-11 10.5406141 -0.113662594 MESMNRPYTSLVPPLS(ph)PQPK ddPTM_HeLa_A486_30min_R1 2 MESMNRPYTSLVPPLSPQPK 20 1 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 MESMNRPYTSLVPPLS(0.999)PQPK;MESMNRPYTSLVPPLS(1)PQPK ; 148.17 8.22E-10 1318320000 664079 537014 346090 254077 635230 573600 724562 708065 442462 734343 TRUE FALSE FALSE 617530.4914 494459.0549 480105.3166 591504.0963 555553.5301 502835.0639 543268.924 546854.0565 480814.9624 550458.733 1.121847024 0.898267255 0.872191298 1.074565741 1.009255548 0.913483671 0.986938514 0.993451504 0.873480487 1 19.07027489 MESSFGS(ph)PSKQESSESLPK ddPTM_HeLa_A485_30min_R1 2 MESSFGSPSKQESSESLPK 19 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 MES(0.001)S(0.004)FGS(0.963)PS(0.032)KQESSESLPK;MESSFGS(0.968)PS(0.032)KQESSESLPK ; 216.15 7.09E-35 2684400000 623470 453440 268910 1065450 728440 665870 1134560 1044150 496960 1434620 TRUE FALSE FALSE 762158.7506 506465.8636 368390.9993 1123652.836 655913.9559 700733.9236 892151.9875 788070.5753 596695.3136 1076995.636 0.707671159 0.470258046 0.34205431 1.043321623 0.609021925 0.650637663 0.828371033 0.731730519 0.554036891 1 20.03858097 -14 0.095615002 1.992834066 0.428838951 0.236033682 0.182913829 299.4136749 1.962835261 61.07578565 3.643528639 1.00E-14 14 -1.563995116 MESSFGS(ph)PSKQESSESLPK ddPTM_HeLa_A486_30min_R1 4 MESSFGSPSKQESSESLPK 19 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 MESSFGS(0.997)PS(0.003)KQESSESLPK;MESS(0.001)FGS(0.964)PS(0.032)KQES(0.001)S(0.002)ESLPK;MES(0.002)S(0.011)FGS(0.833)PS(0.154)KQESSESLPK;MES(0.001)S(0.007)FGS(0.874)PS(0.117)KQESSESLPK ;;; 232.58 5.43E-36 2091850000 1588810 1391580 584001 993540 1289840 1841900 2572080 2292620 1122470 2885270 TRUE FALSE FALSE 1477442.624 1281306.133 810141.8273 2313011.331 1128056.24 1614665.105 1928518.379 1770640.474 1219766.603 2162779.612 0.683122134 0.592434904 0.374583625 1.069462333 0.521577064 0.746569413 0.891685111 0.818687426 0.563980998 1 21.04445523 -13.99997006 0.043634621 2.264765803 1.99E-06 0.205403703 0.187134427 1129.857982 3.661944307 180.2851748 48.57571908 1.00E-14 13.99997006 -2.264763813 MESSSVSVVSVVHDTSTELLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 MESSSVSVVSVVHDTSTELLSPK 23 0 Q5SVZ7;Q5SVZ6 Q5SVZ7 ZMYM1 Zinc finger MYM-type protein 1 1 0 MESSSVSVVSVVHDT(0.004)S(0.004)T(0.004)ELLS(0.986)PK 50.705 0.027863 14291000 10172 13412 9396.2 3702.7 11503 12918 14673 11241 10794 11973 TRUE FALSE FALSE 9458.995328 12349.18427 13034.66028 8620.072724 10060.18648 11324.3085 11001.6602 8681.669689 11729.63261 8974.882869 1.053940811 1.375971637 1.45234879 0.96046632 1.120926772 1.26177786 1.22582772 0.967329581 1.30693991 1 13.1316774 -14 0.086818372 0.372031658 1.361042859 0.111640008 0.158313932 477.4306262 2.892578067 56.01065961 4.291992566 1.00E-14 14 0.989011201 METEADAPS(ph)PAPS(ph)LGER ddPTM_HeLa_A485_30min_R1 2 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 METEADAPS(1)PAPS(1)LGER;METEADAPS(1)PAPS(1)LGER ; 271.2 5.82E-59 1707170000 1291220 1594690 1514610 1238940 1806180 1381740 1832460 1986940 1226310 1522030 TRUE FALSE FALSE 1578447.434 1781175.124 2074927.267 1306620.155 1626350.377 1454085.77 1440939.951 1499639.85 1472419.169 1142615.932 1.38143307 1.558857245 1.815944631 1.143533989 1.423356993 1.272593642 1.261088622 1.312461876 1.288638752 1 20.12390912 -6.164533009 0.107154884 0.705415045 2.042072994 0.454719589 0.156839238 19.67830996 0.833859471 3.546238456 6.44461975 6.85E-07 6.164533009 1.33665795 METEADAPS(ph)PAPS(ph)LGER ddPTM_HeLa_A486_30min_R1 2 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 METEADAPS(1)PAPS(1)LGER;METEADAPS(1)PAPS(1)LGER ; 181.41 2.95E-17 1667090000 1595420 1930810 1666390 646980 2136390 1659740 1930870 2065940 1621190 1811570 TRUE FALSE FALSE 1483589.297 1777805.584 2311660.835 1506202.137 1868424.045 1454978.154 1447745.903 1595570.561 1761716.055 1357941.081 1.092528474 1.309191989 1.702327788 1.109180772 1.375924237 1.071458972 1.066133077 1.174992482 1.297343515 1 20.37298945 -6.259823178 24.93977771 1.129431854 1.327120021 0.240604624 0.173321998 220.453318 3401856.075 0.059697232 0.056641129 5.50E-07 6.259823178 0.197688167 METEADAPS(ph)PAPSLGER ddPTM_HeLa_A485_30min_R1 7 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER ;;;;;; 377.63 4.59E-120 8753160000 6073240 8545890 7896170 6495960 9372220 8076060 9090370 9945180 7521060 9098870 TRUE FALSE FALSE 7424211.286 9545257.496 10817291.87 6850817.846 8439088.869 8498910.014 7148138.188 7506109.012 9030467.755 6830689.161 1.086890519 1.39740768 1.583631112 1.002946801 1.235466681 1.244224384 1.046473938 1.098880191 1.322043434 1 22.70359971 -5.275309935 24.99690487 1.144797985 1.360119583 0.307152833 0.151125321 952.5858502 1716705.855 0.04246611 0.063346177 5.31E-06 5.275309935 0.215321598 METEADAPS(ph)PAPSLGER ddPTM_HeLa_A486_30min_R1 7 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER ;;;;;; 337.71 8.63E-92 8064900000 5958950 6420860 5273560 1489664 7233480 5665660 5995610 5962360 5445590 5964470 TRUE FALSE FALSE 5541258.377 5912047.669 7315623.663 3468013.075 6326189.489 4966688.473 4495444.963 4604860.785 5917618.126 4470927.89 1.239397842 1.322331251 1.636265188 0.775680834 1.414961199 1.11088539 1.005483666 1.029956398 1.323577179 1 22.09214285 -5.250693332 24.99837952 1.10595502 1.391631377 0.346116255 0.191538425 859.789959 2000113.637 0.050593935 0.086522552 5.61E-06 5.250693332 0.285676357 METVSNASSSSNPS(ph)SPGR ddPTM_HeLa_A485_30min_R1 1 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 METVSNASSSSNPS(0.499)S(0.499)PGR 66.022 0.0021391 0 56535 82113 78321 60030 88760 74773 79054 89874 71813 82689 TRUE FALSE FALSE 69111.01571 91715.40106 107295.1971 63309.2869 79922.74274 78687.99866 62163.46709 67832.26058 86225.21039 62076.15408 1.113326312 1.477465903 1.728444661 1.019864839 1.287495077 1.267604281 1.001406547 1.092726532 1.389023075 1 15.92175156 -5.281157 24.90046675 1.159316398 1.443517714 0.334795176 0.186140183 875.3899336 1105487.306 0.052680138 0.078261499 5.23E-06 5.281157 0.284201316 METVSNASSSSNPSS(ph)PGR ddPTM_HeLa_A485_30min_R1 9 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 METVSNASSSSNPS(0.011)S(0.989)PGR;METVSNASSSSNPS(0.003)S(0.997)PGR;METVSNASSSSNPS(0.028)S(0.972)PGR;METVSNASSSSNPS(0.199)S(0.801)PGR;METVSNASSSSNPS(0.217)S(0.783)PGR;METVSNASSSSNPS(0.218)S(0.782)PGR;METVSNASSSSNPS(0.221)S(0.779)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR ;;;;;;;; 352.05 2.60E-115 7496716000 2006771 3111070 2879909 1870213 3139979 2487890 2892597 3521471 2595341 2954079 TRUE FALSE FALSE 2453170.286 3474882.574 3945307.182 1972378.001 2827351.666 2618152.073 2274570.021 2657824.716 3116202.133 2217681.471 1.106186942 1.566898862 1.779023378 0.889387419 1.274913328 1.180580759 1.025652264 1.198470001 1.405162181 1 21.08062073 -5.264084859 24.99154746 1.150088099 1.492322632 0.368220305 0.206579309 249.2620617 2354757.222 0.057377943 0.089671018 5.44E-06 5.264084859 0.342234533 METVSNASSSSNPSS(ph)PGR ddPTM_HeLa_A486_30min_R1 8 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 METVSNASSSSNPSS(1)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPS(0.101)S(0.899)PGR;METVSNASSSSNPS(0.163)S(0.837)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR ;;;;;;; 379.78 2.71E-130 5971240000 5336160 5458320 4806020 1210284 5680310 4324350 4695480 4663840 4563480 4573920 TRUE FALSE FALSE 4962122.74 5025782.844 6667039.654 2817602.316 4967832.553 3790855.664 3520621.24 3601985.443 4959046.121 3428580.661 1.447281902 1.465849382 1.944547996 0.821798463 1.44894726 1.105663258 1.026845097 1.050576259 1.446384557 1 21.70918003 -5.263203824 24.99999748 1.138861529 1.603888714 0.506249246 0.221722497 130.8973127 1854663.315 0.059911785 0.094262687 5.46E-06 5.263203824 0.465027185 METWSVEQVCS(ph)WLVEK ddPTM_HeLa_A486_30min_R1 3 METWSVEQVCSWLVEK 16 0 E9PPN0;E9PRU9;E9PS85;E9PR28;E9PR45;Q8N6K7-2;Q8N6K7 E9PPN0 SAMD3 Sterile alpha motif domain-containing protein 3 1 0 MET(0.323)WS(0.323)VEQVCS(0.354)WLVEK;MET(0.108)WS(0.412)VEQVCS(0.48)WLVEK;MET(0.321)WS(0.321)VEQVCS(0.358)WLVEK ;; 58.024 0.021498 88158000 97106 95045 62229 42073.5 89739 94934 113050 108275 77941 121087 TRUE FALSE FALSE 90299.37086 87513.28805 86325.73535 97949.23428 78483.09784 83222.0083 84763.69428 83623.14613 84696.98864 90766.02706 0.994858691 0.964163475 0.951079805 1.079139822 0.864674817 0.916884995 0.933870271 0.921304466 0.933135352 1 16.46986479 -5.776816424 24.99999993 0.92408349 0.991640652 0.363472052 0.044268081 263.5328475 428450.0315 0.0133704 0.015214411 1.67E-06 5.776816424 0.067557162 MEVDRS(ph)PGLPMSDLK ddPTM_HeLa_A485_30min_R1 3 MEVDRSPGLPMSDLK 15 1 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK ;; 165.06 2.70E-12 1694420000 1906780 2048970 1616680 2243510 2732490 2318620 3091360 3311340 1836590 3059490 TRUE FALSE FALSE 2330936.633 2288579.218 2214757.208 2366067.27 2460433.701 2440019.358 2430865.682 2499228.673 2205176.767 2296815.449 1.014855867 0.996414065 0.964273037 1.030151235 1.071237005 1.062348897 1.058363519 1.08812777 0.960101852 1 21.13120351 -5.468317893 6.80356721 1.046869577 0.992744635 0.242611078 0.037025791 0.295156257 30.34307175 0.010238249 0.015083021 3.40E-06 5.468317893 -0.054124942 MEVDRS(ph)PGLPMSDLK ddPTM_HeLa_A486_30min_R1 4 MEVDRSPGLPMSDLK 15 1 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK ;;; 240.82 1.65E-41 1879130000 4313650 4239910 2942810 1966020 5152400 4664080 5948700 5874450 3534450 5588120 TRUE FALSE FALSE 4011285.411 3903924.09 4082344.843 4576993.917 4506137.948 4088673.23 4460272.341 4536965.973 3840818.972 4188818.379 0.957617411 0.931986956 0.974581487 1.09266946 1.075753957 0.976092268 1.064804424 1.083113557 0.91692182 1 21.9981119 -5.041546248 7.872733138 1.034545013 0.946736198 0.311916321 0.052090636 0.29582584 51.31216699 0.013926824 0.024682564 9.09E-06 5.041546248 -0.087808815 MEVGPFSTGQES(ph)PTAENAR ddPTM_HeLa_A485_30min_R1 5 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 MEVGPFSTGQES(0.792)PT(0.208)AENAR;MEVGPFSTGQES(1)PTAENAR;MEVGPFSTGQES(0.918)PT(0.082)AENAR;MEVGPFSTGQES(0.997)PT(0.003)AENAR;MEVGPFSTGQES(0.997)PT(0.003)AENAR ;;;; 347.53 1.57E-115 2467960000 658977 1149150 649542 487487 479093 787143 727121 864545 480771 507885 TRUE FALSE FALSE 805564.1602 1283533.096 889834.6155 514117.1804 431392.8187 828356.5903 571765.6583 652513.9832 577257.3298 381278.6164 2.112796589 3.366391507 2.333817259 1.348402869 1.131437222 2.172575525 1.499600643 1.711383631 1.514003946 1 18.5404861 -5.096533571 4.299323741 1.531612344 2.765070327 0.611077323 0.415660938 0.138985628 4.415595218 0.109820308 0.202723324 8.01E-06 5.096533571 1.233457983 MEVGPFSTGQES(ph)PTAENAR ddPTM_HeLa_A486_30min_R1 7 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 MEVGPFSTGQES(1)PTAENAR;MEVGPFS(0.029)T(0.013)GQES(0.933)PT(0.025)AENAR;MEVGPFSTGQES(1)PTAENAR;MEVGPFS(0.013)T(0.011)GQES(0.967)PT(0.009)AENAR;MEVGPFSTGQES(1)PTAENAR;MEVGPFSTGQES(0.999)PT(0.001)AENAR;MEVGPFSTGQES(0.993)PT(0.006)AENAR ;;;;;; 401.24 3.46E-163 1923361000 1171667 981207 563484 195306.4 599822 654054 660131 644945 718481 1143121 TRUE FALSE FALSE 1089539.194 903452.5838 781680.0954 454683.1694 524586.7316 573363.4674 494959.2416 498105.1026 780759.5116 856876.0611 1.271524837 1.054356195 0.912244058 0.530628862 0.612208411 0.669132321 0.577632244 0.581303557 0.911169709 1 19.70872702 -4.797049359 1.98818813 0.671661125 1.234813503 0.608795767 0.149690187 0.213949677 1.60680128 0.040769459 0.149343885 1.60E-05 4.797049359 0.563152377 MEVS(ph)QEDDKALQLLHDIR ddPTM_HeLa_A485_30min_R1 1 MEVSQEDDKALQLLHDIR 18 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 MEVS(1)QEDDKALQLLHDIR 153.24 1.34E-08 13228000 18585 16678 11966 23132 28313 20211 28595 34764 16940 41109 TRUE FALSE FALSE 22719.16913 18628.34702 16392.72135 24395.64259 25494.05831 21269.21671 22485.44465 26238.07449 20339.70262 30861.28286 0.736170601 0.603615446 0.531174333 0.79049347 0.826085501 0.689187705 0.728597212 0.850193902 0.659068604 1 14.91351041 -14 0.117284248 1.92106912 0.568939048 0.492547131 0.090434897 136.5698785 1.044097875 29.9753448 0.97221346 1.00E-14 14 -1.352130072 MEVS(ph)QEDDKALQLLHDIR ddPTM_HeLa_A486_30min_R1 1 MEVSQEDDKALQLLHDIR 18 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 MEVS(1)QEDDKALQLLHDIR 160.69 3.49E-12 14619000 25973 25408 18497 14482 27010 29596 42565 38854 26500 42826 TRUE FALSE FALSE 24152.42682 23394.57755 25659.53377 33714.82788 23622.15394 25944.74643 31914.78679 30007.79238 28797.04134 32102.09085 0.752363045 0.728755571 0.799310359 1.050237757 0.735844717 0.80819491 0.994165363 0.934761306 0.897045662 1 14.97037964 -1.510723277 0.18354862 0.999401272 6.03E-14 0.390572908 0.089122001 51.84923824 0.696640333 0.208222382 13.99304587 0.030851531 1.510723277 -0.999401272 MFGGPGTAS(ph)RPSS(ph)SR ddPTM_HeLa_A485_30min_R1 1 MFGGPGTASRPSSSR 15 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 2 0 MFGGPGT(0.005)AS(0.994)RPS(0.445)S(0.546)S(0.01)R 62.648 0.024959 450350000 263800 292810 306580 238770 376050 290880 385310 379170 257480 306590 TRUE FALSE FALSE 322481.3999 327051.5824 419996.6999 251813.4005 338609.1416 306110.027 302985.3708 286177.963 309153.8743 230162.7554 1.401101579 1.420957886 1.824781334 1.094066675 1.47117261 1.32997203 1.316396175 1.243372163 1.34319679 1 17.81229487 -12.46586677 0.091255873 2.55E-12 1.746206579 0.382863338 0.166348807 148.0712426 1.297771132 32.54292885 4.145333417 3.42E-13 12.46586677 1.746206579 MFGGPGTASRPS(ph)SSR ddPTM_HeLa_A486_30min_R1 1 MFGGPGTASRPSSSR 15 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 MFGGPGTASRPS(0.485)S(0.485)S(0.03)R 121.01 2.99E-05 1516300000 563330 495820 450710 213610 639260 491240 554230 543580 477060 629140 TRUE FALSE FALSE 523843.476 456529.4175 625236.9824 497294.8753 559078.0499 430635.8034 415555.792 419818.7003 518411.9449 471599.249 1.11078098 0.96804526 1.325780276 1.054486148 1.185493936 0.91313929 0.881162964 0.890202224 1.09926372 1 18.8472019 -6.266584772 24.98353567 0.945166856 1.12678175 0.403267021 0.104222544 426.984741 2073225.402 0.035739432 0.032473217 5.41E-07 6.266584772 0.181614895 MFGGPGTASRPSS(ph)SR ddPTM_HeLa_A485_30min_R1 2 MFGGPGTASRPSSSR 15 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 MFGGPGTASRPS(0.007)S(0.497)S(0.497)R;MFGGPGTAS(0.001)RPS(0.167)S(0.416)S(0.416)R ; 120.52 3.38E-05 2723600000 612540 836750 813660 524620 940420 738690 883480 1020050 758360 868170 TRUE FALSE FALSE 748797.4098 934600.6337 1114666.693 553278.6622 846788.4828 777366.6662 694717.2806 769881.1381 910555.8959 651751.1965 1.148900706 1.433983764 1.71026413 0.84891085 1.299251137 1.192735311 1.065924059 1.181250057 1.397091253 1 19.3139618 -5.258159266 24.9999809 1.153943694 1.431342932 0.32530347 0.190933047 357.8614424 2727494.838 0.05189937 0.085358505 5.52E-06 5.258159266 0.277399237 MFGGPGTASRPSS(ph)SR ddPTM_HeLa_A486_30min_R1 2 MFGGPGTASRPSSSR 15 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 MFGGPGT(0.011)AS(0.381)RPS(0.18)S(0.417)S(0.011)R;MFGGPGTASRPS(0.157)S(0.741)S(0.102)R ; 114.96 7.71E-05 2387060000 795440 762450 674260 273064 964290 742790 898890 896810 689850 843610 TRUE FALSE FALSE 739683.7637 702030.6852 935351.5293 635706.7919 843339.7566 651152.1219 673978.2145 692625.9402 749646.7534 632364.565 1.169710962 1.110167653 1.479133369 1.005285285 1.333629054 1.029710009 1.065806422 1.095295307 1.185466098 1 19.270397 -6.280394038 24.7214937 1.08062095 1.216020304 0.243284239 0.127018849 1121.042271 1462107.58 0.042917881 0.037913609 5.24E-07 6.280394038 0.135399354 MFGGPGTASRPSSS(ph)R ddPTM_HeLa_A485_30min_R1 1 MFGGPGTASRPSSSR 15 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 MFGGPGTAS(0.001)RPS(0.071)S(0.174)S(0.753)R 80.175 0.0021849 1608100000 408700 570540 588930 384250 682460 565870 575810 636050 526190 525370 TRUE FALSE FALSE 499613.905 637259.69 806799.7144 405240.6045 614511.8861 595498.0782 452783.4896 480057.7402 631791.5065 394404.9277 1.266753709 1.615749817 2.045612663 1.027473482 1.558073551 1.509864701 1.148016817 1.217169732 1.601885428 1 18.58931805 -12.19309865 0.103860629 7.12E-05 1.780738139 0.198972757 0.276528318 173.3818663 1.834478285 43.41617741 4.796741702 6.41E-13 12.19309865 1.78066694 MFGGPGTASRPSSSR ddPTM_HeLa_A485_30min_R1 2 MFGGPGTASRPSSSR 15 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 183.41 2.89E-11 84305000 71606 69381 71017 100230 84262 83904 95346 96130 80712 141284 FALSE FALSE TRUE 87534.50766 77494.50442 97289.14356 105705.3111 75872.57942 88297.0837 74974.54819 72553.96677 96910.15807 106064.4989 0.825295066 0.730635653 0.917263972 0.996613496 0.715343778 0.832484805 0.706876938 0.68405515 0.913690811 1 16.69458232 -5.805572491 24.99993543 0.789038679 0.861239265 0.04427734 0.11178006 354.5478477 200837.5479 0.034719599 0.039368514 1.56E-06 5.805572491 0.072200586 MFGIPVVVAVNAFK ddPTM_HeLa_A485_30min_R1 4 MFGIPVVVAVNAFK 14 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ;;; ;;; 244.55 3.87E-30 41682500 122028 125514 104568 133075 165621 135566 199001 187926 86234 177008 FALSE FALSE TRUE 149172.7076 140191.7705 143252.0546 140344.5503 149131.1917 142664.0261 156482.8107 141836.8538 103540.3728 132883.1632 1.122585466 1.055000251 1.078030137 1.056149981 1.122273041 1.073604983 1.177596972 1.067380174 0.779183535 1 17.0197988 -7.643159116 7.194526403 0.891957287 1.095730008 0.647981184 0.060570478 0.119853721 6.914139809 0.038709096 0.014340207 2.27E-08 7.643159116 0.20377272 MFGIPVVVAVNAFK ddPTM_HeLa_A486_30min_R1 3 MFGIPVVVAVNAFK 14 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ;; ;; 226.59 6.60E-22 30717600 66914.8 67849 45902.9 28372.9 67151 68799.8 85927 79344 64769.8 88497 FALSE FALSE TRUE 62224.41807 62472.39814 63677.7322 66053.54509 58728.29542 60311.98018 64427.15576 61279.10327 70384.09841 66336.77518 0.938007883 0.941746082 0.959916005 0.995730421 0.885305251 0.909178657 0.971213261 0.923757646 1.061011757 1 16.01752126 -7.756339142 24.99990502 1.030505891 0.941255171 0.550617238 0.0324819 86.33424331 423202.0319 0.023854801 0.008399341 1.75E-08 7.756339142 -0.089250719 MFPMDSKPSLLNPTGSILVS(ph)SPLKPNPLDLPQLQHR ddPTM_HeLa_A485_30min_R1 1 MFPMDSKPSLLNPTGSILVSSPLKPNPLDLPQLQHR 36 2 O75376-2;O75376;A0A088AWL3;O75376-3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MFPMDSKPSLLNPTGSILVS(0.759)S(0.241)PLKPNPLDLPQLQHR 265.67 1.98E-65 465300000 187230 167430 119410 251320 237230 254990 330410 309550 153870 370750 TRUE FALSE FALSE 228878.6676 187009.4821 163584.7281 265048.9752 213610.5482 268340.8821 259815.2043 233632.3771 184750.2976 278328.8481 0.822331818 0.671901182 0.587739033 0.952287113 0.767475415 0.964114514 0.933482842 0.839411289 0.663784221 1 18.08643092 -5.265602991 24.98966228 0.869422926 0.691781728 0.364432245 0.109009976 387.6798421 2326827.015 0.030497964 0.047135504 5.42E-06 5.265602991 -0.177641198 MFPMDSKPSLLNPTGSILVS(ph)SPLKPNPLDLPQLQHR ddPTM_HeLa_A486_30min_R1 4 MFPMDSKPSLLNPTGSILVSSPLKPNPLDLPQLQHR 36 2 O75376-2;O75376;A0A088AWL3;O75376-3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MFPMDSKPSLLNPTGSILVS(0.706)S(0.294)PLKPNPLDLPQLQHR;MFPMDSKPSLLNPT(0.011)GS(0.067)ILVS(0.519)S(0.403)PLKPNPLDLPQLQHR;MFPMDSKPSLLNPTGSILVS(0.5)S(0.5)PLKPNPLDLPQLQHR;MFPMDSKPSLLNPT(0.004)GS(0.003)ILVS(0.524)S(0.469)PLKPNPLDLPQLQHR ;;; 178.88 2.96E-21 1110040000 349432 359578 184301 175508 352488 418029 509182 477516 289337 550047 TRUE FALSE FALSE 324938.6213 331083.7297 255667.283 408591.4937 308275.6682 366456.8322 381779.278 368796.0309 314416.9641 412311.651 0.788089836 0.802993873 0.620082606 0.990977317 0.747676345 0.888786022 0.925948314 0.894459397 0.762571136 1 18.6533757 -5.26434383 24.99983553 0.8786719 0.743649286 0.364788905 0.090179999 295.7799314 2545907.043 0.024267414 0.037874431 5.44E-06 5.26434383 -0.135022614 MFPMDSKPSLLNPTGSILVSS(ph)PLKPNPLDLPQLQHR ddPTM_HeLa_A485_30min_R1 1 MFPMDSKPSLLNPTGSILVSSPLKPNPLDLPQLQHR 36 2 O75376-2;O75376;A0A088AWL3;O75376-3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MFPMDSKPSLLNPTGSILVS(0.216)S(0.784)PLKPNPLDLPQLQHR 180.9 2.62E-21 524460000 128580 107760 84669 155310 149850 150040 200940 221280 99805 218810 TRUE FALSE FALSE 157182.1774 120361.5946 115991.5865 163794.192 134930.4078 157895.8624 158007.5275 167010.733 119834.948 164264.6939 0.956883513 0.732729546 0.706126093 0.997135709 0.821420627 0.961228239 0.961908026 1.01671716 0.729523461 1 17.3256629 -5.26528524 24.99832962 0.926044737 0.791994701 0.240124047 0.104359846 443.3857826 2882036.91 0.028350525 0.043872405 5.43E-06 5.26528524 -0.134050036 MFPMDSKPSLLNPTGSILVSS(ph)PLKPNPLDLPQLQHR ddPTM_HeLa_A486_30min_R1 1 MFPMDSKPSLLNPTGSILVSSPLKPNPLDLPQLQHR 36 2 O75376-2;O75376;A0A088AWL3;O75376-3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MFPMDSKPSLLNPTGSILVS(0.25)S(0.75)PLKPNPLDLPQLQHR 313.82 2.95E-111 446150000 541230 480460 242200 225880 464600 542170 665340 650580 379880 770100 TRUE FALSE FALSE 503292.5719 442386.5998 335986.3263 525860.0553 406325.5358 475282.5778 498864.8948 502457.1361 412808.3043 577261.9475 0.871861681 0.766353302 0.582034426 0.910955689 0.703884151 0.823339525 0.864191546 0.870414442 0.715114353 1 19.1388666 -6.487146877 9.261775847 0.850558911 0.764526803 0.151198831 0.105453722 0.922883174 232.2512643 0.036533081 0.031778254 3.26E-07 6.487146877 -0.086032108 MFPTGFSSPS(ph)PSAAAAAQEVR ddPTM_HeLa_A486_30min_R1 1 MFPTGFSSPSPSAAAAAQEVR 21 0 A0A669KAU9;A0A669KAX4;Q13620-1 A0A669KAU9 CUL4B Cullin-4B 1 0 MFPTGFS(0.01)S(0.031)PS(0.868)PS(0.091)AAAAAQEVR 93.269 5.68E-06 0 26586 29180 24727 10281 36101 23825 25145 28995 23617 26147 TRUE FALSE FALSE 24722.45869 26867.67053 34301.95661 23934.68757 31572.87595 20885.71373 18853.45504 22393.47146 25664.14058 19599.62101 1.261374323 1.370826023 1.750133668 1.221181142 1.610892166 1.065618244 0.961929572 1.142546146 1.309420246 1 14.25853814 -6.275943785 24.8712022 1.096438621 1.443631267 0.51297766 0.16904209 635.3626452 1089474.845 0.059093276 0.052350764 5.30E-07 6.275943785 0.347192646 MFS(ph)PMEEK ddPTM_HeLa_A485_30min_R1 4 MFSPMEEK 8 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK ;;; 169.37 2.55E-05 1019250000 1268800 993610 707617 1822600 1324570 1093410 1719030 1517970 798060 1950740 TRUE FALSE FALSE 1551040.183 1109804.046 969393.9747 1922164.023 1192691.16 1150659.257 1351745.197 1145685.477 958223.3218 1464456.419 1.059123483 0.757826612 0.661947984 1.312544367 0.814425848 0.785724479 0.923035455 0.782328148 0.654320135 1 20.48193383 MFS(ph)PMEEK ddPTM_HeLa_A486_30min_R1 4 MFSPMEEK 8 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK;MFS(1)PMEEK ;;; 151.83 0.00020372 903543000 1565280 1393780 720784 765840 1189810 1691810 2147300 1927760 1152490 2338950 TRUE FALSE FALSE 1455561.955 1283331.797 999890.8681 1782914.223 1040572.935 1483091.683 1610022.828 1488851.131 1252388.761 1753261.696 0.830202336 0.731968194 0.570303264 1.016912779 0.593506912 0.845904343 0.91830149 0.849189333 0.714319353 1 20.74160992 -6.490374219 24.48913831 0.861344761 0.749363787 0.160992504 0.133793702 1004.584712 756862.2814 0.045526057 0.040113656 3.23E-07 6.490374219 -0.111980974 MFVLDEADEMLSR ddPTM_HeLa_A486_30min_R1 1 MFVLDEADEMLSR 13 0 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KTB5;J3KSZ0;J3QR64;J3KTN0;J3QLN6 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 117.67 0.0066793 12144000 9907.6 15769 13080 5462.3 20662 11953 15962 16365 11128 13241 FALSE FALSE TRUE 9213.128403 14519.40701 18144.92629 12716.51045 18070.37929 10478.36039 11968.13877 12639.04675 12092.584 9925.367416 0.928240539 1.462858391 1.828136485 1.281213069 1.82062573 1.055715114 1.205813172 1.273408451 1.21835127 1 13.27690479 -6.296235327 24.99991782 1.171192837 1.47419078 0.276217213 0.252435732 886.1811089 636693.6982 0.088551213 0.078098335 5.06E-07 6.296235327 0.302997943 MFVSSSGLPPS(ph)PVPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 MFVSSSGLPPSPVPSPR 17 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 MFVSS(0.001)S(0.001)GLPPS(0.998)PVPS(1)PR 123.4 2.16E-06 0 45057 47095 48094 49641 67917 39707 60175 71228 35872 61469 TRUE FALSE FALSE 55079.77421 52602.35058 65885.97196 52352.76213 61154.94501 41785.99712 47318.11967 53759.22132 43071.18136 46145.90955 1.193600359 1.139913615 1.427774912 1.134504935 1.325251698 0.905518984 1.025402254 1.164983459 0.933369431 1 15.49391515 -6.256916028 24.99101477 1.017388005 1.242518336 0.568069241 0.103671217 303.520597 1676919.931 0.034211561 0.033090947 5.53E-07 6.256916028 0.225130331 MFVSSSGLPPS(ph)PVPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 MFVSSSGLPPSPVPSPR 17 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 MFVSSSGLPPS(1)PVPS(1)PR;MFVS(0.005)S(0.005)S(0.005)GLPPS(0.985)PVPS(1)PR;MFVS(0.006)S(0.006)S(0.006)GLPPS(0.981)PVPS(1)PR ;; 123.63 2.07E-06 0 103567 94501 91240 54324 162007 94936 132473 125420 77822.7 110242 TRUE FALSE FALSE 96307.48812 87012.39659 126570.5715 126469.0174 141686.5714 83223.76156 99326.85424 96864.6039 84568.4343 82636.68565 1.165432609 1.052951191 1.531651112 1.53042219 1.714572291 1.007104301 1.20197045 1.172174357 1.023376405 1 16.33449477 -6.297095888 24.99069453 1.099251307 1.394450879 0.41860298 0.186769709 725.7467079 508654.151 0.072774543 0.064183448 5.05E-07 6.297095888 0.295199571 MFVSSSGLPPS(ph)PVPSPR ddPTM_HeLa_A485_30min_R1 1 MFVSSSGLPPSPVPSPR 17 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 MFVSSS(0.001)GLPPS(0.999)PVPSPR 123.14 3.13E-06 0 73839 102160 87589 93145 128790 109040 128330 136130 77697 125300 TRUE FALSE FALSE 90264.23081 114106.7233 119991.816 98233.27549 115967.2154 114749.1658 100911.2471 102743.9041 93290.07522 94065.01598 0.959594062 1.213062286 1.275626382 1.044312537 1.232841075 1.219892057 1.072781906 1.092264781 0.991761648 1 16.52137064 -7.379353828 1.544064013 0.997681052 1.161022662 0.297105027 0.091816533 0.50928559 2.145966021 0.077359988 0.027510123 4.17E-08 7.379353828 0.16334161 MFVSSSGLPPS(ph)PVPSPR ddPTM_HeLa_A486_30min_R1 1 MFVSSSGLPPSPVPSPR 17 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 MFVSSSGLPPS(1)PVPSPR 153.18 2.82E-09 0 110540 116980 101270 52667 124070 129880 140700 151920 95802 127980 TRUE FALSE FALSE 102791.7168 107710.0788 140484.4561 122611.4376 108507.9837 113856.7261 105495.3718 117331.1324 104106.1945 95932.97499 1.071495144 1.122763875 1.464402163 1.278094812 1.131081192 1.186836186 1.099677893 1.223053204 1.085197186 1 16.54973918 -5.772294638 24.48014823 1.134355186 1.242673855 0.188701392 0.112428333 311.5965436 702692.4405 0.036430774 0.041729812 1.69E-06 5.772294638 0.10831867 MGANS(ph)LER ddPTM_HeLa_A485_30min_R1 3 MGANSLER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGANS(1)LER;MGANS(1)LER;MGANS(1)LER ;; 122.74 0.000651 1960590000 1151850 1541600 1404140 1120360 1883570 1539560 1782600 1810650 1398060 1632350 TRUE FALSE FALSE 1408075.059 1721876.71 1923589.817 1181562.43 1696035.157 1620168.981 1401732.947 1366585.249 1678637.818 1225435.186 1.149040826 1.405114468 1.569719752 0.964198224 1.384026815 1.322117236 1.143865431 1.115183621 1.369829949 1 20.22486275 -14 0.129638577 0.08692491 1.384323344 0.188888514 0.167773303 236.4982759 1.933411979 55.92708636 1.28698644 1.00E-14 14 1.297398434 MGANS(ph)LER ddPTM_HeLa_A486_30min_R1 2 MGANSLER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGANS(1)LER;MGANS(1)LER ; 136.86 0.00046728 775830000 732130 714540 713290 268058 984970 757260 905760 944400 708680 892820 TRUE FALSE FALSE 680811.4677 657917.2481 989494.9906 624052.5709 861425.8781 663836.9605 679129.2678 729380.7361 770108.953 669252.0607 1.017272128 0.983063462 1.478508694 0.932462681 1.287147143 0.991908728 1.014758576 1.089844588 1.150700907 1 19.35219015 MGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_HeLa_A485_30min_R1 10 MGAPESGLAEYLFDKHTLGDSDNES 25 1 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 MGAPESGLAEYLFDKHTLGDS(0.5)DNES(0.5);MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHTLGDS(0.785)DNES(0.215);MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHT(0.002)LGDS(0.982)DNES(0.017);MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHTLGDS(0.984)DNES(0.016);MGAPESGLAEYLFDKHTLGDS(0.992)DNES(0.008);MGAPESGLAEYLFDKHT(0.002)LGDS(0.729)DNES(0.269) ;;;;;;;;; 257.92 8.07E-62 9585600000 1993664 2774946 2138773 1772968 3065814 3087182 4176320 4851120 2069802 2828133 TRUE FALSE FALSE 2437147.679 3099451.796 2929994.134 1869820.752 2760570.793 3248822.076 3284015.115 3661375.214 2485192.276 2123131.491 1.147902374 1.459849194 1.380034231 0.880690037 1.300235433 1.530202952 1.546778958 1.724516465 1.170531494 1 21.01776229 -6.012136166 24.31578351 1.44543467 1.226639821 0.089991228 0.239400098 786.8105119 1576441.655 0.076666899 0.080777418 9.72E-07 6.012136166 -0.218794849 MGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_HeLa_A486_30min_R1 12 MGAPESGLAEYLFDKHTLGDSDNES 25 1 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHT(0.004)LGDS(0.992)DNES(0.004);MGAPESGLAEYLFDKHT(0.002)LGDS(0.499)DNES(0.499);MGAPESGLAEYLFDKHT(0.005)LGDS(0.994)DNES(0.001);MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHT(0.004)LGDS(0.972)DNES(0.024);MGAPESGLAEYLFDKHT(0.093)LGDS(0.907)DNES;MGAPESGLAEYLFDKHT(0.007)LGDS(0.974)DNES(0.019);MGAPESGLAEYLFDKHTLGDS(0.5)DNES(0.5);MGAPESGLAEYLFDKHTLGDS(0.988)DNES(0.012);MGAPESGLAEYLFDKHTLGDS(1)DNES;MGAPESGLAEYLFDKHTLGDS(1)DNES ;;;;;;;;;;; 241.4 1.99E-49 6826126000 3014762 3154226 2458902 1317851 4402873 3150012 4152382 4308968 2664737 3907421 TRUE FALSE FALSE 2803442.752 2904273.644 3411054.706 3068023.729 3850623.613 2761395.546 3113412.104 3327910.051 2895718.549 2928977.349 0.957140469 0.991565758 1.164588967 1.047472672 1.314664866 0.942784876 1.062968994 1.136202044 0.988644911 1 21.48196561 -4.601053248 7.359542398 1.088266559 0.965586071 0.157375099 0.100327834 0.334953326 26.02875985 0.024746075 0.066420108 2.51E-05 4.601053248 -0.122680489 MGFFLSLHQR ddPTM_HeLa_A486_30min_R1 1 MGFFLSLHQR 10 0 A2A2Q9;Q9Y312 A2A2Q9 AAR2 Protein AAR2 homolog 0 0 105.4 0.0028665 11858000 11142 9962.1 10805 4669.1 11856 8581.9 11121 11920 7797.5 11551 FALSE FALSE TRUE 10361.00334 9172.666915 14988.98537 10869.90076 10368.90993 7523.152432 8338.408174 9206.076212 8473.393578 8658.554416 1.196620456 1.059376251 1.731118689 1.255394404 1.19753361 0.868869337 0.96302544 1.063234781 0.978615271 1 13.07991047 -6.024170981 3.295652158 0.978841918 1.319701874 0.476374399 0.166806506 0.230335513 5.157775263 0.058692344 0.06258926 9.46E-07 6.024170981 0.340859956 MGFGS(ph)ISR ddPTM_HeLa_A485_30min_R1 1 MGFGSISR 8 0 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7 A0A1B0GWK2 KAZN Kazrin 1 0 MGFGS(0.964)IS(0.036)R 114.86 0.0010077 53513000 45915 53026 50848 39860 70880 47292 64017 73691 45426 46464 TRUE FALSE FALSE 56128.63335 59226.92944 69658.79116 42037.45087 63822.93833 49768.13599 50339.24498 55618.16671 54542.58153 34881.37991 1.60912881 1.697952592 1.997019365 1.205154469 1.82971369 1.426782316 1.443155205 1.594494451 1.56365894 1 15.09016949 -11.83577753 0.187887564 5.19E-12 1.739467854 0.455974077 0.202246321 48.29549817 0.983620076 20.37404727 0.60632677 1.46E-12 11.83577753 1.739467854 MGLS(ph)MER ddPTM_HeLa_A485_30min_R1 4 MGLSMER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGLS(1)MER;MGLS(1)MER;MGLS(1)MER;MGLS(1)MER ;;; 132.84 0.0016378 912030000 593160 803910 836410 673710 1109730 812450 1007800 1189820 853830 955310 TRUE FALSE FALSE 725106.3956 897920.2814 1145832.865 710513.0714 999241.3847 854988.6257 792475.297 898014.7794 1025185.849 717168.7982 1.011067963 1.252034784 1.597717117 0.990719442 1.393314081 1.192172091 1.105005264 1.25216655 1.429490312 1 19.4519532 MGLS(ph)MER ddPTM_HeLa_A486_30min_R1 4 MGLSMER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGLS(1)MER;MGLS(1)MER;MGLS(1)MER;MGLS(1)MER ;;; 125.83 0.001749 859200000 733210 862160 757340 327971 1049400 854950 1032080 1052800 754840 932640 TRUE FALSE FALSE 681815.7653 793839.3017 1050602.33 763533.0627 917774.4667 749474.9615 773842.6678 813100.4225 820270.139 699100.8735 0.97527523 1.135514676 1.502790756 1.092164367 1.312792619 1.072055536 1.106911316 1.163065951 1.173321576 1 19.41514111 -6.28735489 24.84755822 1.113502527 1.210337957 0.113641449 0.138391687 1776.772864 1703547.777 0.049380742 0.043565486 5.16E-07 6.28735489 0.096835431 MGPLGLDHMAS(ph)SIER ddPTM_HeLa_A485_30min_R1 1 MGPLGLDHMASSIER 15 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGPLGLDHMAS(0.623)S(0.377)IER 111.22 0.00016 54381000 48519 66220 64598 43981 83912 59651 67629 85265 60769 62725 TRUE FALSE FALSE 59311.88416 73963.85296 88495.48835 46383.57066 75557.42665 62774.23412 53179.51167 64353.62506 72964.78089 47088.81187 1.259574872 1.570730924 1.879331519 0.985023168 1.604572799 1.333102952 1.129344945 1.366643636 1.549514163 1 15.5230967 -5.259943164 24.99999729 1.305761229 1.569964262 0.229732896 0.239310255 216.7715894 3621967.097 0.064853784 0.105212581 5.50E-06 5.259943164 0.264203033 MGPLGLDHMASS(ph)IER ddPTM_HeLa_A485_30min_R1 1 MGPLGLDHMASSIER 15 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGPLGLDHMAS(0.033)S(0.967)IER 98.062 0.00052249 54605000 56980 63701 62301 45570 80428 59985 80414 86267 59407 70619 TRUE FALSE FALSE 69655.00442 71150.27782 85348.73246 48059.37371 72420.30592 63125.72185 63232.89198 65109.88299 71329.43999 53014.98295 1.313873938 1.34207867 1.609898329 0.906524364 1.366034692 1.190714744 1.19273625 1.228141166 1.345458133 1 15.69411253 -14 0.051040722 0.035406763 1.75699682 0.205917415 0.167284175 889.329833 3.34542703 118.7451958 25.70060249 1.00E-14 14 1.721590057 MGPLGLDHMASS(ph)IER ddPTM_HeLa_A486_30min_R1 1 MGPLGLDHMASSIER 15 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGPLGLDHMAS(0.02)S(0.98)IER 195.46 6.57E-19 47649000 74899 74797 65151 24624 80716 75578 79191 92261 71778 89382 TRUE FALSE FALSE 69648.96688 68869.81331 90379.212 57325.91643 70591.84663 66253.95478 59376.5742 71255.18434 77999.77483 67000.16542 1.039534253 1.027905124 1.348940132 0.85560858 1.05360705 0.988862555 0.886215337 1.063507588 1.164172869 1 16.03187704 -5.285415785 24.99933918 1.001171456 1.127704482 0.225269949 0.115948371 1241.625395 1294595.59 0.032922568 0.04885924 5.18E-06 5.285415785 0.126533026 MGPSGGEGMEPERRDS(ph)QDGSSYR ddPTM_HeLa_A485_30min_R1 8 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.869)QDGS(0.065)S(0.065)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR ;;;;;;; 274.48 4.27E-75 12221430000 789884 1110727 1100361 910495 1682466 1023032 1340277 1544060 1101664 1259247 TRUE FALSE FALSE 965590.9707 1240616.861 1507430.324 960233.0364 1514953.778 1076596.374 1053915.87 1165376.864 1322757.86 945339.8976 1.021422002 1.312350049 1.594590821 1.015754269 1.602549286 1.138845802 1.114853898 1.232759632 1.399240488 1 19.85047362 MGPSGGEGMEPERRDS(ph)QDGSSYR ddPTM_HeLa_A486_30min_R1 8 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 MGPSGGEGMEPERRDS(0.573)QDGS(0.338)S(0.089)YR;MGPSGGEGMEPERRDS(0.695)QDGS(0.256)S(0.05)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.939)QDGS(0.039)S(0.022)YR;MGPSGGEGMEPERRDS(1)QDGSSYR;MGPSGGEGMEPERRDS(0.999)QDGSSYR ;;;;;;; 311.04 3.35E-105 17044850000 2297464 2591473 2558603 1165093 3676400 2672087 3358470 3359587 2156002 2491717 TRUE FALSE FALSE 2136423.638 2386115.241 3549362.603 2712395.385 3215271.631 2342432.074 2518145.284 2594682.379 2342885.989 1867774.845 1.143833607 1.277517602 1.900316097 1.452206829 1.72144498 1.25412979 1.348206017 1.389183705 1.254372815 1 20.83288912 -6.303488819 24.90857883 1.279691595 1.506444427 0.237860147 0.22009102 813.590223 481939.0668 0.079803964 0.07038101 4.97E-07 6.303488819 0.226752833 MGPSGGEGMEPERRDSQDGS(ph)SYR ddPTM_HeLa_A485_30min_R1 5 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 MGPSGGEGMEPERRDS(0.147)QDGS(0.795)S(0.059)YR;MGPSGGEGMEPERRDS(0.096)QDGS(0.452)S(0.452)YR;MGPSGGEGMEPERRDS(0.176)QDGS(0.42)S(0.404)Y(0.001)R;MGPSGGEGMEPERRDS(0.004)QDGS(0.859)S(0.137)YR;MGPSGGEGMEPERRDS(0.171)QDGS(0.658)S(0.171)YR ;;;; 212.32 1.47E-29 13565180000 1280400 1700110 1670390 1586300 2624630 1589360 2119710 2352470 1785010 2177790 TRUE FALSE FALSE 1565220.563 1898923.076 2288336.772 1672955.552 2363312.622 1672576.432 1666816.642 1775523.044 2143245.134 1634907.032 0.957375882 1.161486885 1.399673943 1.023272589 1.445533339 1.023040698 1.019517691 1.086008567 1.310927834 1 20.64077717 MGPSGGEGMEPERRDSQDGS(ph)SYR ddPTM_HeLa_A486_30min_R1 2 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 MGPSGGEGMEPERRDS(0.123)QDGS(0.754)S(0.123)YR;MGPSGGEGMEPERRDS(0.364)QDGS(0.61)S(0.026)YR ; 160.57 2.45E-14 4166390000 515690 548150 534520 238420 776330 535750 674460 715120 454040 564660 TRUE FALSE FALSE 479542.794 504712.5977 741500.4589 555053.8091 678955.4524 469654.6121 505702.9743 552302.787 493396.5528 423265.4607 1.1329599 1.192425663 1.751856761 1.311360979 1.604088959 1.109598244 1.194765511 1.30486146 1.165690562 1 18.69120324 -6.285547523 24.99320155 1.176523383 1.401873371 0.300105185 0.184476317 1137.377087 1179128.651 0.066364641 0.058556387 5.18E-07 6.285547523 0.225349988 MGQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR ddPTM_HeLa_A485_30min_R1 9 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MGQAPSQSLLPPAQDQPRS(0.986)PVPS(0.009)AFS(0.003)DQS(0.001)R;MGQAPSQSLLPPAQDQPRS(0.988)PVPS(0.011)AFS(0.001)DQSR;MGQAPSQSLLPPAQDQPRS(0.991)PVPS(0.005)AFS(0.003)DQS(0.001)R;MGQAPSQSLLPPAQDQPRS(0.965)PVPS(0.034)AFS(0.001)DQSR;MGQAPSQSLLPPAQDQPRS(0.995)PVPS(0.005)AFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(0.999)PVPS(0.001)AFS(0.001)DQSR;MGQAPSQSLLPPAQDQPRS(0.995)PVPS(0.005)AFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR ;;;;;;;; 290.69 1.68E-92 22081860000 2644195 4606295 4348428 2991614 6251728 4696916 5712882 7238109 4037695 4501358 TRUE FALSE FALSE 3232387.055 5144961.131 5957092.47 3155038.298 5629284.009 4942839.259 4492278.091 5462951.419 4848023.351 3379252.292 0.956539132 1.522514653 1.762843362 0.933649821 1.665837151 1.462702051 1.329370435 1.616615436 1.4346438 1 21.68827263 -9.990672309 4.814210502 0.999995302 1.421990601 0.17819863 0.262515421 167844709.6 26.09705217 10860.22023 0.060716761 1.02E-10 9.990672309 0.421995299 MGQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR ddPTM_HeLa_A486_30min_R1 12 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MGQAPSQSLLPPAQDQPRS(0.987)PVPS(0.013)AFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(0.996)PVPS(0.002)AFS(0.002)DQSR;MGQAPSQSLLPPAQDQPRS(0.996)PVPS(0.003)AFSDQSR;MGQAPSQSLLPPAQDQPRS(0.972)PVPS(0.024)AFS(0.003)DQSR;MGQAPS(0.01)QS(0.008)LLPPAQDQPRS(0.979)PVPS(0.002)AFSDQSR;MGQAPS(0.001)QS(0.003)LLPPAQDQPRS(0.981)PVPS(0.012)AFS(0.003)DQS(0.001)R;MGQAPSQSLLPPAQDQPRS(0.999)PVPS(0.001)AFS(0.001)DQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR;MGQAPSQSLLPPAQDQPRS(1)PVPSAFSDQSR ;;;;;;;;;;; 310.49 3.45E-109 17870780000 4032107 4455444 4697414 1787221 7050945 4487597 5801839 6424428 4261077 5195237 TRUE FALSE FALSE 3749477.121 4102378.391 6516378.502 4160740.809 6166549.731 3933962.909 4350157.517 4961725.989 4630430.585 3894315.84 0.96280766 1.053427241 1.673305086 1.068413806 1.583474475 1.010180753 1.117053083 1.274094396 1.189022867 1 21.89293846 MGQLRGS(ph)ATR ddPTM_HeLa_A486_30min_R1 1 MGQLRGSATR 10 1 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 MGQLRGS(0.996)AT(0.004)R 58.781 0.0064525 0 74877 61056 67961 27418 97590 64203 77224 79835 65242 65016 TRUE FALSE FALSE 69628.50897 56217.7002 94277.31926 63830.48963 85349.35221 56282.28663 57901.73841 61658.31329 70897.22909 48735.57042 1.42869999 1.153525027 1.934466314 1.309731046 1.751274305 1.154850269 1.188079629 1.26516039 1.454732724 1 15.57268751 -6.286518305 24.68248219 1.227606795 1.507267397 0.303192246 0.228915419 913.5872212 899141.9822 0.07865132 0.069393381 5.17E-07 6.286518305 0.279660601 MGS(ph)GIER ddPTM_HeLa_A485_30min_R1 1 MGSGIER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGS(1)GIER 74.92 0.012408 0 102260 110120 88240 172590 141150 126190 173220 167770 95113 192800 TRUE FALSE FALSE 125007.3842 122997.5761 120883.648 182018.1547 127096.6104 132797.1133 136210.1319 126624.1444 114201.3067 144738.5082 0.86367744 0.849791653 0.835186499 1.257565502 0.878111927 0.917496766 0.941077351 0.874847655 0.789018127 1 17.14308928 -9.703903151 13.93616651 0.999998297 0.916894003 0.043068268 0.122587641 0 0 0.121537357 0.029477139 1.98E-10 9.703903151 -0.083104294 MGS(ph)GIER ddPTM_HeLa_A486_30min_R1 2 MGSGIER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGS(1)GIER;MGS(1)GIER ; 91.069 0.0065788 88366000 171394 191143 144140 112365 226548 252219 303427 280501 175511 324873 TRUE FALSE FALSE 159380.1657 175996.1325 199954.8682 261591.3986 198132.2374 221102.7842 227506.3553 216637.0456 190724.4348 243522.6862 0.654477692 0.722709392 0.821093391 1.074197245 0.813608951 0.907935058 0.934230641 0.889596977 0.783189598 1 17.89369665 -4.821785757 3.0468005 0.908397309 0.676823847 0.55568725 0.080215044 0.178948536 3.312116858 0.021143603 0.056766666 1.51E-05 4.821785757 -0.231573463 MGS(ph)KSPGNTSQPPAFFSK ddPTM_HeLa_A485_30min_R1 1 MGSKSPGNTSQPPAFFSK 18 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C184 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 MGS(0.549)KS(0.451)PGNTSQPPAFFSK 128.98 4.62E-06 1000200000 283130 487320 281970 340720 836630 688740 1175400 2016700 442240 546110 TRUE FALSE FALSE 346111.2917 544307.8349 386282.4368 359332.6709 753332.1796 724801.3614 924266.1879 1522101.163 530993.5115 409974.8274 0.844225715 1.327661599 0.942210133 0.876474961 1.837508377 1.767916743 2.254446191 3.712669806 1.295185646 1 18.6451758 -6.050971421 1.735148805 2.236818087 1.011141543 0.291253242 0.705803399 0.392035519 2.372711631 0.270019218 0.287172432 8.89E-07 6.050971421 -1.225676544 MGS(ph)KSPGNTSQPPAFFSK ddPTM_HeLa_A486_30min_R1 2 MGSKSPGNTSQPPAFFSK 18 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C184 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 MGS(0.544)KS(0.456)PGNTSQPPAFFSK;MGS(0.539)KS(0.46)PGNTSQPPAFFSK ; 116.24 3.09E-05 1572070000 1269760 1056450 1027010 970120 2967200 1533670 2464100 2980000 915300 1625840 TRUE FALSE FALSE 1180756.381 972733.0545 1424695.776 2258488.387 2595026.108 1344461.389 1847556.117 2301519.053 994638.941 1218719.082 0.968850327 0.798160191 1.169010806 1.85316569 2.129306209 1.103175792 1.51598194 1.888473798 0.816134707 1 20.21693419 -5.015635607 5.560377946 1.523931252 0.900529675 0.257193652 0.397050877 0.199916803 20.93291211 0.106175226 0.203762756 9.65E-06 5.015635607 -0.623401577 MGS(ph)PAPLLPGDLLGGGSDSI ddPTM_HeLa_A485_30min_R1 5 MGSPAPLLPGDLLGGGSDSI 20 0 Q9UPQ9-1;Q9UPQ9;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI ;;;; 139.6 7.82E-08 46859300 162704 133351 119957 216490 179002 146170 221775 175946 107896 277095 TRUE FALSE FALSE 198896.9435 148945.2395 164334.0861 228316.3005 161179.9324 153823.2352 174390.9595 132794.9676 129549.7375 208020.3161 0.956141916 0.716012947 0.789990561 1.097567319 0.774827841 0.739462559 0.838336191 0.638374992 0.622774448 1 17.66636491 -5.974828356 24.97954891 0.750435767 0.878596054 0.150384077 0.13683209 418.057738 414865.3776 0.042577939 0.048277339 1.06E-06 5.974828356 0.128160287 MGS(ph)PAPLLPGDLLGGGSDSI ddPTM_HeLa_A486_30min_R1 8 MGSPAPLLPGDLLGGGSDSI 20 0 Q9UPQ9-1;Q9UPQ9;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI ;;;;;;; 188.47 3.61E-19 142751000 289219 360905 227215 171610 348663 393145 461661 440170 299491 487566 TRUE FALSE FALSE 268946.2416 332305.5734 315198.733 399516.7527 304930.4354 344642.7671 346148.5348 339952.8998 325451.121 365476.3001 0.735878747 0.909239733 0.862432757 1.093139973 0.834337097 0.942996214 0.947116228 0.930164007 0.890484885 1 18.47941833 -3.938740092 1.48364379 0.938531108 0.486397169 0.441939918 0.068054232 2.4635153 2.687346864 0.018239706 2.060688342 0.000115149 3.938740092 -0.452133939 MGS(ph)SPLEVPKPR ddPTM_HeLa_A485_30min_R1 1 MGSSPLEVPKPR 12 1 Q8NCE2;Q8NCE2-2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 0 MGS(0.5)S(0.5)PLEVPKPR 158.52 9.19E-09 343660000 255990 263960 189310 261100 310340 235290 332460 335970 199930 374180 TRUE FALSE FALSE 312934.0923 294827.8259 259343.6468 275363.2319 279441.4599 247609.4206 261427.2051 253572.8307 240054.1171 280903.8123 1.114025793 1.049568617 0.92324716 0.98027588 0.994794117 0.881474048 0.930664497 0.902703415 0.854577641 1 18.09971668 -1.000001877 0.492873888 0.913698404 7.335777346 0.624093605 0.046549905 64.07532979 0.69583183 0.025717935 424.4091936 0.099999568 1.000001877 6.422078942 MGS(ph)SPLEVPKPR ddPTM_HeLa_A486_30min_R1 1 MGSSPLEVPKPR 12 1 Q8NCE2;Q8NCE2-2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 0 MGS(0.5)S(0.5)PLEVPKPR 40.941 0.038045 187470000 49809 41943 28634 20408 47148 51897 58740 63491 42361 62940 TRUE FALSE FALSE 46317.64631 38619.28393 39721.85165 47510.85536 41234.2582 45494.47579 44042.63071 49035.4853 46032.88559 47179.41433 0.981734237 0.818562173 0.841931851 1.00702512 0.873988344 0.964286574 0.933513723 1.039340695 0.975698538 1 15.52586989 -6.570377334 0.767295864 1.008297184 0.890029144 0.322514159 0.058318402 0.752081163 0.91077234 0.045134594 0.03263151 2.69E-07 6.570377334 -0.11826804 MGS(ph)VER ddPTM_HeLa_A485_30min_R1 1 MGSVER 6 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGS(1)VER 81.296 0.020608 879480000 812690 861700 742770 1161700 1237900 965550 1338100 1257800 741320 1485200 TRUE FALSE FALSE 993470.0868 962468.3192 1017551.532 1225160.729 1114650.329 1016104.705 1052204.004 949322.5778 890096.1242 1114966.973 0.891030955 0.863225856 0.912629304 1.098831408 0.999716006 0.911331662 0.943708674 0.851435604 0.798316135 1 20.08856955 -7.249743916 20.62804673 0.868656913 0.947967583 0.110051611 0.078080255 131.4189817 231796.291 0.03961793 0.022499363 5.63E-08 7.249743916 0.07931067 MGS(ph)VER ddPTM_HeLa_A486_30min_R1 2 MGSVER 6 0 A0A087X0X3;P52272-2;P52272;M0QZM1 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGS(1)VER;MGS(1)VER ; 87.323 0.016818 1945840000 986130 1010000 616300 546850 1089900 1103000 1335300 1331300 798640 1498500 TRUE FALSE FALSE 917007.3794 929963.9216 854947.8651 1273094.436 953194.5791 966923.0745 1001193.817 1028192.052 867866.7582 1123265.846 0.81637609 0.827910797 0.761126912 1.13338658 0.84859215 0.860814096 0.891324008 0.91535949 0.772628101 1 20.09926798 -11.96722156 0.013357297 1.930345282 2.32E-06 0.091317051 0.101637466 15079.93507 22.05319645 1829.472302 1384.024235 1.08E-12 11.96722156 -1.930342959 MGSS(ph)PLEVPKPR ddPTM_HeLa_A485_30min_R1 1 MGSSPLEVPKPR 12 1 Q8NCE2;Q8NCE2-2 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 0 MGS(0.127)S(0.873)PLEVPKPR 120.53 5.79E-05 203520000 306470 295000 242190 299630 349880 297800 380200 381170 242770 415850 TRUE FALSE FALSE 374643.1942 329497.6838 331786.1594 315998.0282 315044.7187 313392.3475 298967.1641 287687.4598 291491.7122 312186.2482 1.200063092 1.055452269 1.06278275 1.012209955 1.009156299 1.003863397 0.957656418 0.921525088 0.93371093 1 18.25204746 -1.000000015 0.38727286 0.950101772 4.505940572 0.857525807 0.028544506 24.53969697 0.332347881 0.022093984 65.87819605 0.099999997 1.000000015 3.5558388 MGYLPVQTVLEGDNMETPAS(ph)SPQLSHDDTHSR ddPTM_HeLa_A485_30min_R1 2 MGYLPVQTVLEGDNMETPASSPQLSHDDTHSR 32 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8 A0A5H1ZRP9 DMD Dystrophin 1 0 MGYLPVQTVLEGDNMET(0.052)PAS(0.241)S(0.241)PQLS(0.241)HDDT(0.112)HS(0.112)R;MGYLPVQTVLEGDNMET(0.049)PAS(0.332)S(0.332)PQLS(0.049)HDDT(0.118)HS(0.118)R ; 133.4 1.18E-06 181344000 38120.1 55964 43419 35310 65638 41441 61491 69610 47968 60165 TRUE FALSE FALSE 46599.78473 62508.50298 59481.49492 37238.89589 59102.85025 43610.78668 48352.94551 52538.03836 57594.73761 45166.97275 1.031722559 1.383942717 1.316924542 0.824471812 1.308541322 0.965545929 1.070537664 1.163195918 1.275151601 1 15.4629806 MGYLPVQTVLEGDNMETPAS(ph)SPQLSHDDTHSR ddPTM_HeLa_A486_30min_R1 1 MGYLPVQTVLEGDNMETPASSPQLSHDDTHSR 32 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8 A0A5H1ZRP9 DMD Dystrophin 1 0 MGYLPVQTVLEGDNMET(0.004)PAS(0.578)S(0.402)PQLS(0.014)HDDT(0.001)HS(0.001)R 190.22 2.35E-21 123060000 52462 69201 59400 16260 84833 55160 63443 72535 58844 60069 TRUE FALSE FALSE 48784.68471 63717.26073 82401.27079 37854.10173 74192.4541 48354.92003 47568.89037 56020.36393 63944.6453 45027.33142 1.083446058 1.415079658 1.830027856 0.840691654 1.647720435 1.073901528 1.056444805 1.244141329 1.420129581 1 15.45851336 MGYLPVQTVLEGDNMETPASSPQLS(ph)HDDTHSR ddPTM_HeLa_A486_30min_R1 1 MGYLPVQTVLEGDNMETPASSPQLSHDDTHSR 32 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8 A0A5H1ZRP9 DMD Dystrophin 1 0 MGYLPVQTVLEGDNMET(0.033)PAS(0.229)S(0.229)PQLS(0.288)HDDT(0.11)HS(0.11)R 91.113 0.00040827 31048000 24612 24547 25304 9206 35052 25439 29902 28047 28455 29875 TRUE FALSE FALSE 22886.8259 22601.80632 35102.38646 21432.03325 30655.45131 22300.59482 22420.20333 21661.31036 30921.50231 22394.10555 1.022002234 1.009274797 1.5674833 0.957039039 1.368907155 0.995824315 1.001165386 0.967277318 1.380787558 1 14.45083142 MHEFHS(ph)QENLVVHIPK ddPTM_HeLa_A485_30min_R1 2 MHEFHSQENLVVHIPK 16 0 Q9Y3M8-4;H3BRG5;Q9Y3M8-5;Q9Y3M8-3;Q9Y3M8-2;Q9Y3M8 Q9Y3M8-4 STARD13 StAR-related lipid transfer protein 13 1 0 MHEFHS(1)QENLVVHIPK;MHEFHS(1)QENLVVHIPK ; 148.26 4.17E-08 300570000 423660 448230 349670 413810 517990 439920 554500 629870 381410 560910 TRUE FALSE FALSE 517901.7054 500646.5994 479027.484 436415.3925 466417.0968 462953.531 436026.5452 475393.3949 457955.4885 421085.4598 1.229920657 1.188942975 1.137601579 1.036405752 1.107654245 1.099428917 1.035482311 1.12897129 1.087559491 1 18.68375353 -4.846264605 2.268394872 1.077391382 1.220877114 0.681888395 0.037916593 0.175431786 1.774723755 0.010170372 0.031186865 1.42E-05 4.846264605 0.143485732 MHLPS(ph)PTDSNFYR ddPTM_HeLa_A485_30min_R1 2 MHLPSPTDSNFYR 13 0 Q504U8;E9PFD7;P00533 Q504U8 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor 1 0 MHLPS(1)PTDSNFYR;MHLPS(1)PTDSNFYR ; 155.98 1.82E-08 247070000 170435 203780 138627 172031 153226 180850 216940 231890 164758 307880 TRUE FALSE FALSE 208347.6778 227610.2983 189910.8961 181428.6179 137970.2814 190319.0264 170588.9968 175018.6139 197823.4194 231131.1821 0.90142609 0.98476673 0.821658481 0.784959503 0.596934953 0.823424276 0.738061369 0.757226318 0.855892388 1 17.81835238 -4.908594834 4.359318351 0.776033702 0.941911885 0.250163559 0.098239193 0.239280968 8.205587352 0.025110643 0.055685833 1.23E-05 4.908594834 0.165878183 MHLPS(ph)PTDSNFYR ddPTM_HeLa_A486_30min_R1 1 MHLPSPTDSNFYR 13 0 Q504U8;E9PFD7;P00533 Q504U8 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor 1 0 MHLPS(1)PTDSNFYR 131.96 1.31E-05 102110000 86185 85687 87749 24931 122670 86043 94161 79769 100520 109490 TRUE FALSE FALSE 80143.87656 78896.85005 121727.7628 58040.62794 107283.5847 75427.88948 70600.92187 61607.34005 109233.1545 82072.99134 0.976495133 0.961301017 1.483164691 0.707183045 1.307172835 0.919034243 0.860221136 0.750640851 1.330926932 1 16.32461992 MHNLHGTKPPPS(ph)EGS(ph)DEEEEEEDEEDEEER ddPTM_HeLa_A486_30min_R1 1 MHNLHGTKPPPSEGSDEEEEEEDEEDEEER 30 1 Q9BQ67;M0QX71 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 2 0 MHNLHGT(0.001)KPPPS(0.999)EGS(1)DEEEEEEDEEDEEER 181.8 3.11E-20 317480000 65683 81352 35736 11396 50048 67073 65279 60524 61619 88247 TRUE FALSE FALSE 61078.96089 74905.37124 49573.93624 26530.46392 43770.51316 58798.21521 48945.50375 46744.00643 66960.18453 66149.37681 0.923348999 1.132366998 0.749424086 0.401068993 0.661691996 0.888870282 0.739923883 0.706643187 1.012257224 1 16.01343994 -9.586433074 12.85786916 0.99999991 0.791964011 0.084785881 0.193034533 0 0 0.202726605 0.049168424 2.59E-10 9.586433074 -0.208035899 MHPHLSTLS(ph)LPRR ddPTM_HeLa_A485_30min_R1 1 MHPHLSTLSLPRR 13 1 O95140-2 O95140-2 1 0 MHPHLSTLS(1)LPRR 63.682 0.012595 95488000 86415 128210 112900 80786 136070 99583 117000 112580 92449 101000 TRUE FALSE FALSE 105637.7186 143203.0442 154666.4082 85199.13462 122522.393 104797.0119 92001.9942 84969.57848 111002.6663 75822.55877 1.393222813 1.888660137 2.039846857 1.123664725 1.6159095 1.382134995 1.213385511 1.120637181 1.463979429 1 16.21033952 -5.893952036 0.846643644 1.201995761 1.751197526 0.390463464 0.252100083 0.650172199 1.024853991 0.140306354 0.198490223 1.28E-06 5.893952036 0.549201765 MHPHLSTLS(ph)LPRR ddPTM_HeLa_A486_30min_R1 2 MHPHLSTLSLPRR 13 1 O95140-2 O95140-2 1 0 MHPHLSTLS(0.999)LPRR;MHPHLSTLS(1)LPRR ; 58.723 0.019602 173754000 189585 201696 193337 68876 244140 179439 198012 206175 165929 208411 TRUE FALSE FALSE 176296.0705 185712.8744 268202.2641 160346.8088 213517.6847 157301.6406 148467.3032 159233.4533 180311.8593 156223.5291 1.128486033 1.188763789 1.716785338 1.026393462 1.366744728 1.006901083 0.950351744 1.019266779 1.154191436 1 17.25325223 -6.269751787 24.46001215 1.022609459 1.289636813 0.346193021 0.178086389 541.5621256 1593590.612 0.062041779 0.055658869 5.37E-07 6.269751787 0.267027354 MHS(ph)VT(ph)PVEIS(ph)WPLDLK ddPTM_HeLa_A486_30min_R1 1 MHSVTPVEISWPLDLK 16 0 Q86VR7;Q86VR7-2 Q86VR7 VSIG10L V-set and immunoglobulin domain-containing protein 10-like 3 0 MHS(1)VT(1)PVEIS(1)WPLDLK 43.955 0.023025 70183000 33930 27046 21636 12085 24845 26626 29625 29345 24660 31853 TRUE FALSE FALSE 31551.68221 24902.77646 30014.03863 28134.49074 21728.70843 23341.15483 22212.51166 22663.7841 26797.54866 23876.80147 1.32143672 1.042969532 1.257037659 1.17831908 0.910034305 0.977566231 0.930296786 0.949196823 1.122325731 1 14.54332197 -5.730623995 11.23811701 0.976286309 1.192975873 0.611598314 0.085118294 0.410902474 147.6463841 0.024190972 0.031060293 1.86E-06 5.730623995 0.216689564 MHT(ph)FT(ph)RVTSCK ddPTM_HeLa_A485_30min_R1 1 MHTFTRVTSCK 11 1 H0YCG7;H0YDG2;Q9UKW4-2;Q9UKW4;Q9UKW4-4 H0YCG7 VAV3 Guanine nucleotide exchange factor VAV3 2 0 MHT(0.644)FT(0.764)RVT(0.564)S(0.028)CK 42.475 0.026982 526950000 544000 784790 909570 253910 791450 797250 574220 713230 761350 268720 TRUE FALSE FALSE 665010.9232 876564.3637 1246057.793 267780.4604 712650.4591 838992.7772 451533.2061 538309.2242 914145.9615 201733.0494 3.296489718 4.345169848 6.176765765 1.327400052 3.532641087 4.158925767 2.23827086 2.668423571 4.531463556 1 17.62208793 -9.303000207 0.195351321 1.31E-13 4.42963276 0.257044649 1.289362909 18.77447508 1.146608738 20.5500272 4.728619729 4.98E-10 9.303000207 4.42963276 MHYYQGK ddPTM_HeLa_A486_30min_R1 1 MHYYQGK 7 0 C9JII0 C9JII0 RBM6 0 0 61.837 0.032624 79788000 58472 140680 239290 4191 220130 76456 29920 60851 99691 16141 FALSE FALSE TRUE 54373.41475 129532.0045 331949.4964 9756.859801 192519.2428 67023.63607 22433.69954 46996.55567 108332.2961 12099.18854 4.493972019 10.7058423 27.43568259 0.80640613 15.91174831 5.539514972 1.8541491 3.884273355 8.953682786 1 13.56262267 -6.402072476 5.966036997 4.105641249 12.03118566 0.236003326 6.895418966 0.361606965 16.22788106 2.443316793 2.141995441 3.96E-07 6.402072476 7.925544411 MIAILTENYGGKWPFWLSPR ddPTM_HeLa_A485_30min_R1 4 MIAILTENYGGKWPFWLSPR 20 1 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ;;; ;;; 180.83 1.43E-18 108070000 175528.7 270993.4 221097.5 127716.5 246943.1 218621.1 286657.4 325767 135186.5 211422.4 FALSE FALSE TRUE 214574.4537 302683.7208 302890.6659 134693.329 222356.5779 230067.7627 225410.7047 245872.1325 162317.1905 158718.6866 1.351916767 1.907045271 1.90834912 0.848629307 1.400947693 1.449531669 1.420190083 1.549106395 1.022672213 1 17.27611247 -1.000004509 0.054746123 0.265972853 3.646255057 0.252476991 0.292853857 604.3577527 2.491371515 33.7503966 167.4494664 0.099998962 1.000004509 3.380282204 MIAILTENYGGKWPFWLSPR ddPTM_HeLa_A486_30min_R1 2 MIAILTENYGGKWPFWLSPR 20 1 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 173.09 4.98E-15 65876000 159341 149518 133049 57428 186393 131643 186045 173317 124209 187164 FALSE FALSE TRUE 148172.0187 137669.6491 184569.136 133695.2863 163013.8519 115402.2251 139494.5732 133856.5026 134975.5361 140296.9162 1.056131687 0.981273523 1.315560891 0.952945296 1.161920421 0.822557104 0.994281108 0.954094404 0.962070584 1 17.09812377 -6.247808055 24.94444614 0.946711563 1.091848618 0.3321106 0.104192704 924.5736412 1691911.509 0.033165218 0.032985816 5.65E-07 6.247808055 0.145137055 MIDMHAHYNAHGPPHTMQPDRAS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 MIDMHAHYNAHGPPHTMQPDRASPSR 26 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 MIDMHAHYNAHGPPHTMQPDRAS(0.836)PS(0.163)R 134.67 1.45E-06 238600000 101190 160650 163300 88756 177720 150240 167580 200570 125620 142440 TRUE FALSE FALSE 123699.3664 179436.62 223711.4655 93604.51554 160025.5728 158106.3341 131775.164 151379.893 150830.7817 106932.3294 1.156800446 1.678039009 2.092084468 0.875362166 1.496512548 1.478564387 1.232322953 1.415660669 1.410525541 1 16.70633857 -12.64345482 0.142921822 1.28E-17 1.605870053 0.15744689 0.30331822 163.2147385 2.042628546 50.01798505 1.920376942 2.27E-13 12.64345482 1.605870053 MIDQVFGVLES(ph)PELSR ddPTM_HeLa_A485_30min_R1 4 MIDQVFGVLESPELSR 16 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MIDQVFGVLES(0.995)PELS(0.005)R;MIDQVFGVLES(0.969)PELS(0.031)R;MIDQVFGVLES(0.963)PELS(0.037)R;MIDQVFGVLES(0.973)PELS(0.027)R ;;; 106.36 0.00024843 59708000 47548.2 67248.9 76965 54344.5 76827.7 58211.3 65310.1 63580.7 59236.5 75909.2 TRUE FALSE FALSE 58125.13305 75113.07387 105437.5563 57313.20243 69178.46443 61259.15366 51356.0636 47987.43363 71124.7222 56986.43345 1.019981942 1.318086943 1.85022206 1.005734154 1.213946202 1.074977849 0.901198066 0.842085225 1.248099204 1 15.79833088 MIDQVFGVLES(ph)PELSR ddPTM_HeLa_A486_30min_R1 3 MIDQVFGVLESPELSR 16 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MIDQVFGVLES(0.989)PELS(0.011)R;MIDQVFGVLES(0.802)PELS(0.198)R;MIDQVFGVLES(0.962)PELS(0.038)R ;; 111.22 0.00018317 36426700 33895.3 38848.5 33466.5 15110.4 42191.7 39358.8 47034.6 43488 33421.4 40649 TRUE FALSE FALSE 31519.41451 35770.00338 46425.62506 35177.77484 36899.62356 34503.11143 35266.0456 33586.73174 36318.39386 30470.22582 1.034433243 1.173932992 1.523639022 1.15449669 1.211005911 1.132354963 1.157393641 1.102280368 1.191930578 1 14.89511257 -6.155967507 1.720796924 1.121015006 1.239022594 0.14392642 0.124439031 0.767715699 4.516169351 0.052429438 0.051632975 6.98E-07 6.155967507 0.118007588 MIEAVQNHIGSLNWGYR ddPTM_HeLa_A485_30min_R1 2 MIEAVQNHIGSLNWGYR 17 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 178.51 8.42E-14 82708000 36076 50022 52990 34746 67151 45082 62697 68024 47528 62554 FALSE FALSE TRUE 44100.98174 55871.63777 72593.2061 36644.086 60465.21066 47442.42381 49301.27376 51341.00734 57066.43365 46960.43902 0.93910923 1.189759698 1.545837467 0.780318216 1.287577627 1.010263635 1.049846952 1.093282099 1.215202303 1 15.51915828 -5.269007445 24.99749025 1.072935138 1.221387891 0.135729435 0.186568886 1261.607091 4167112.418 0.051302602 0.077792459 5.38E-06 5.269007445 0.148452753 MIEAVQNHIGSLNWGYR ddPTM_HeLa_A486_30min_R1 2 MIEAVQNHIGSLNWGYR 17 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 122.16 6.96E-06 81955000 40933 48816 52046 9246.9 63119 50323 55214 52508 48747 41125 FALSE FALSE TRUE 38063.80808 44947.64238 72199.60504 21527.25051 55202.02646 44114.65991 41398.87321 40553.07464 52972.42921 30827.03232 1.234754214 1.458059339 2.342087434 0.698323805 1.790701936 1.43103817 1.342940598 1.315503686 1.718375894 1 14.91190839 -11.03435969 2.673890006 0.404939076 1.481588535 0.114247493 0.402047872 79245608.34 72948303.6 286910158.3 0.094345745 9.24E-12 11.03435969 1.07664946 MIFEGPNKLS(ph)PR ddPTM_HeLa_A485_30min_R1 3 MIFEGPNKLSPR 12 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 MIFEGPNKLS(1)PR;MIFEGPNKLS(1)PR;MIFEGPNKLS(1)PR ;; 148.7 7.22E-08 1659963000 1428938 1607526 1344122 1627512 1909419 1727776 2143760 2305380 1374094 2002146 TRUE FALSE FALSE 1746800.328 1795512.182 1841368.661 1716418.859 1719310.54 1818239.68 1685728.163 1739981.94 1649862.062 1503047.849 1.162172135 1.194580853 1.225089848 1.141958894 1.143882772 1.209701794 1.121539919 1.157635761 1.097677671 1 20.51945951 -8.487487798 0.460536402 0.986551948 1.186324034 0.773245454 0.029096962 0.93600355 0.375418945 0.053676114 0.017468302 3.25E-09 8.487487798 0.199772086 MIFEGPNKLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 MIFEGPNKLSPR 12 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 MIFEGPNKLS(1)PR;MIFEGPNKLS(1)PR ; 159.69 1.65E-09 1157870000 2222400 2043010 1317270 800070 2093100 2192700 2377800 2354000 1724270 2635800 TRUE FALSE FALSE 2066621.236 1881114.447 1827352.222 1862603.393 1830563.881 1922186.968 1782849.29 1818045.587 1873731.112 1975778.524 1.045978186 0.952087708 0.924877055 0.942718716 0.92650257 0.972875727 0.902352804 0.920166692 0.948350784 1 20.91398981 -4.268492363 3.698995204 0.938450225 1.056792589 0.572221649 0.026575451 0.168091079 4.350853083 0.006309929 0.054181188 5.39E-05 4.268492363 0.118342363 MIGVS(ph)FEEAK ddPTM_HeLa_A486_30min_R1 1 MIGVSFEEAK 10 0 Q6ZWJ1-2 Q6ZWJ1-2 1 0 MIGVS(1)FEEAK 47.261 0.031043 386150000 91405 241090 480700 25215 339570 106060 78716 127270 193440 67880 TRUE FALSE FALSE 84997.98152 221985.1504 666839.9136 58701.7943 296977.9642 92975.39554 59020.42423 98293.39928 210207.535 50882.40618 1.670478814 4.362709373 13.1055106 1.153675675 5.83655504 1.827260197 1.15993776 1.931775768 4.131242029 1 15.63487928 -6.013093801 1.625503166 2.029835703 5.781163408 0.188791002 3.178804657 0.626482537 3.35989878 1.271616346 1.396056805 9.70E-07 6.013093801 3.751327705 MIHILLYYK ddPTM_HeLa_A485_30min_R1 4 MIHILLYYK 9 0 B1AJY5;B1AJY7;O75832 B1AJY5 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 0 ;;; ;;; 146.35 9.69E-05 127907000 424399 507724 403741 363668 555470 419947 649880 660300 303561 616860 FALSE FALSE TRUE 518805.0934 567097.9052 553101.597 383534.262 500165.4564 441934.7756 511027.829 498360.3897 364482.9083 463088.1545 1.120316053 1.224600327 1.194376474 0.828210047 1.080065321 0.954321054 1.103521703 1.076167431 0.787070247 1 18.82092733 -5.226755104 24.88467428 0.987589279 1.184247968 0.457470718 0.101255547 536.9708853 385255.9684 0.026792843 0.046403881 5.93E-06 5.226755104 0.196658689 MIHILLYYK ddPTM_HeLa_A486_30min_R1 3 MIHILLYYK 9 0 B1AJY5;B1AJY7;O75832 B1AJY5 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 0 ;; ;; 130.34 0.00051117 103405000 223363 245031 162560 128376 296053 241443 286398 270735 169178 286775 FALSE FALSE TRUE 207706.4071 225613.8512 225507.5855 298865.8158 258919.2722 211656.2175 214738.1912 209094.5506 183842.4853 214964.6734 0.966235074 1.049539199 1.049044859 1.390302002 1.204473591 0.984609304 0.998946421 0.972692616 0.855221848 1 17.71374007 -6.37135152 5.567854516 0.959785634 1.136600766 0.361164503 0.11300553 0.290750487 12.53670476 0.044541758 0.039088994 4.25E-07 6.37135152 0.176815132 MIKFDCGRAPGLEK ddPTM_HeLa_A485_30min_R1 1 MIKFDCGRAPGLEK 14 2 A0A075B6F0;Q9H0D2-2;Q9H0D2;H7BXG6;M0R167 A0A075B6F0 ZNF541 Zinc finger protein 541 0 0 68.809 0.034606 18940000 108300 45723 61391 104660 159230 46324 45372 35204 39133 58423 FALSE FALSE TRUE 132390.9614 51069.90711 84102.08559 110377.3108 143376.5021 48749.45301 35677.90154 26570.1638 46986.63415 43859.2213 3.018543363 1.16440524 1.917546256 2.516627234 3.269016136 1.111498371 0.81346409 0.605805644 1.071305709 1 15.42059258 -6.431514923 7.269574976 0.856353253 2.289923955 0.632913727 0.554965684 0.192393738 13.35534319 0.205454078 0.18048968 3.70E-07 6.431514923 1.433570702 MIKPFFHSLSEK ddPTM_HeLa_A485_30min_R1 4 MIKPFFHSLSEK 12 1 P10599 P10599 TXN Thioredoxin 0 0 ;;; ;;; 181.32 2.21E-10 1298619000 1778600 1586150 1391410 1872200 2217130 2368260 3078720 3234540 1601820 2674470 FALSE FALSE TRUE 2174243.434 1771636.445 1906150.46 1974473.545 1996384.752 2492258.432 2420926.321 2441263.993 1923290.581 2007773.849 1.082912518 0.882388445 0.949385042 0.983414315 0.9943275 1.241304359 1.205776399 1.215905862 0.95792192 1 20.93716535 -6.122330171 6.392881707 1.14231035 0.968923471 0.352429848 0.097295065 0.237848961 11.46741978 0.031880615 0.03196409 7.55E-07 6.122330171 -0.173386879 MIKPFFHSLSEK ddPTM_HeLa_A486_30min_R1 5 MIKPFFHSLSEK 12 1 P10599 P10599 TXN Thioredoxin 0 0 ;;;; ;;;; 202.81 1.40E-16 1945360000 3491810 4676050 3250210 1499957 8601050 5242750 6101660 5873380 4597940 5988320 FALSE FALSE TRUE 3247052.151 4305502.768 4508778.356 3491975.7 7522226.107 4595952.809 4574960.131 4536139.589 4996493.141 4488805.695 0.723366608 0.959164433 1.004449438 0.777929796 1.675774498 1.023869849 1.019193176 1.010544875 1.113100785 1 22.09790022 -4.269624959 0.982978099 1.104789303 0.551400129 0.21373311 0.215125597 3.184425565 2.489902674 0.073267821 1.870909338 5.37E-05 4.269624959 -0.553389175 MILIYLLPVK ddPTM_HeLa_A485_30min_R1 1 MILIYLLPVK 10 0 Q5JVF3-3;Q5JVF3-2;Q5JVF3;Q5JVF3-4 Q5JVF3-3 PCID2 PCI domain-containing protein 2 0 0 89.298 0.0017321 0 5448.3 6667.1 6070.2 5602.1 7475.3 6654.3 8662.4 8466.7 5076.5 10022 FALSE FALSE TRUE 6660.255539 7446.759349 8315.819582 5908.128538 6731.032885 7002.708858 6811.607475 6390.22855 6095.306986 7523.699841 0.885236742 0.989773583 1.105283273 0.785269038 0.894643995 0.930753354 0.905353432 0.849346556 0.810147549 1 12.87722658 -5.267004017 24.99907986 0.8794433 0.993065437 0.313058884 0.075416353 535.3589924 2405096.999 0.021076477 0.032295273 5.41E-06 5.267004017 0.113622137 MIPCDFLIPVQTQHPIRK ddPTM_HeLa_A485_30min_R1 1 MIPCDFLIPVQTQHPIRK 18 1 P06744-2;P06744;A0A2U3TZU2;K7EQ48;K7ESF4 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 75.018 0.0066657 148690000 121450 206580 169440 108540 200010 205020 230270 274080 155410 171440 FALSE FALSE TRUE 148466.1335 230737.734 232122.907 114469.2654 180096.3021 215754.5302 181070.9334 206861.4503 186599.3615 128703.1631 1.153554659 1.792789924 1.803552464 0.889405222 1.399315275 1.676373175 1.406887981 1.607275573 1.449842855 1 16.97368799 -8.060711506 20.51215474 0.999999997 1.475403257 0.211059245 0.269009174 4226.70859 1428048.449 0.26270142 0.067829215 8.70E-09 8.060711506 0.47540326 MIPLEKPGSGGS(ph)SPGATSGSGR ddPTM_HeLa_A485_30min_R1 1 MIPLEKPGSGGSSPGATSGSGR 22 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 0 MIPLEKPGS(0.049)GGS(0.728)S(0.22)PGAT(0.002)S(0.001)GSGR 84.169 0.0012539 195570000 102780 136840 122030 95842 164210 153670 163460 175150 127290 131080 TRUE FALSE FALSE 125643.0564 152842.2477 167173.9751 101077.6058 147860.6758 161715.9236 128535.4357 132194.1879 152835.9354 98404.16835 1.276806242 1.553209079 1.698850546 1.027167929 1.502585493 1.643384892 1.306199095 1.343379961 1.553144933 1 16.58643181 -10.53612579 2.808217754 0.978359076 1.434969458 0.318853381 0.190230476 42602921.67 44179887.42 6990629.745 0.04696305 2.91E-11 10.53612579 0.456610382 MIPLEKPGSGGS(ph)SPGATSGSGR ddPTM_HeLa_A486_30min_R1 1 MIPLEKPGSGGSSPGATSGSGR 22 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 0 MIPLEKPGS(0.043)GGS(0.471)S(0.471)PGAT(0.006)S(0.004)GS(0.005)GR 72.499 0.0030557 255210000 198780 187180 160590 98791 261040 203900 193460 207270 148510 227510 TRUE FALSE FALSE 184846.5485 172347.1751 222774.7487 229990.4406 228297.9291 178744.8911 145054.2618 160079.1457 161382.9664 170540.0152 1.083889598 1.010596692 1.30629019 1.348601033 1.338676608 1.048111148 0.850558514 0.938660323 0.946305571 1 17.37975076 -6.494170525 5.513199939 0.930258802 1.217350396 0.616521172 0.105908599 0.139518034 12.47145925 0.044051838 0.03711061 3.21E-07 6.494170525 0.287091593 MIS(ph)TPSPKK ddPTM_HeLa_A485_30min_R1 1 MISTPSPKK 9 1 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 MIS(0.432)T(0.339)PS(0.229)PKK 87.363 0.0023462 835350000 306350 267870 181770 564000 526470 464210 772280 838130 324020 884020 TRUE FALSE FALSE 374496.5006 299195.0663 249014.2871 594809.8919 474052.7983 488515.3178 607276.0691 632577.3034 389047.8419 663650.0832 0.56429813 0.450832561 0.375219251 0.896270349 0.714311367 0.736103754 0.915054612 0.953178971 0.586224355 1 19.34006324 -5.262643111 24.99850562 0.821753294 0.462188229 0.64242116 0.12480987 66.326214 1377440.276 0.034097959 0.053933428 5.46E-06 5.262643111 -0.359565066 MISTPS(ph)PK ddPTM_HeLa_A485_30min_R1 6 MISTPSPK 8 0 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 MIS(0.026)T(0.011)PS(0.963)PK;MIS(0.001)T(0.011)PS(0.987)PK;MIS(0.005)T(0.001)PS(0.994)PK;MIS(0.001)T(0.002)PS(0.997)PK;MIST(0.001)PS(0.999)PK;MIS(0.021)T(0.017)PS(0.962)PK ;;;;; 105.4 0.0014359 3205570000 6725580 6342450 4659840 10866000 7563330 6815990 10774890 9880900 5410860 14150210 TRUE FALSE FALSE 8221662.068 7084144.356 6383708.728 11459582.07 6810298.309 7172864.697 8472746.729 7457593.782 6496769.971 10622823.06 0.773962064 0.666879634 0.600942771 1.078769928 0.641100607 0.675231495 0.797598405 0.702035018 0.61158601 1 23.34066388 -10.25546893 3.932021428 1.000318429 0.72961399 0.276743849 0.132088479 179705806.2 347076722.2 707174.5217 0.032638996 5.55E-11 10.25546893 -0.270704439 MISTPS(ph)PK ddPTM_HeLa_A486_30min_R1 5 MISTPSPK 8 0 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 MIS(0.001)T(0.005)PS(0.994)PK;MIS(0.001)T(0.006)PS(0.993)PK;MIS(0.001)T(0.033)PS(0.966)PK;MIST(0.002)PS(0.998)PK;MIS(0.025)T(0.012)PS(0.962)PK ;;;; 117.02 0.00090975 2956210000 7242630 6920050 3411350 4516590 5906870 7799310 9990220 9049820 5365910 13370900 TRUE FALSE FALSE 6734959.038 6371680.036 4732316.079 10514849.78 5165975.285 6837110.43 7490561.29 6989373.542 5831031.399 10022739.61 0.671967875 0.635722396 0.472157939 1.049099367 0.515425471 0.682159838 0.747356669 0.697351604 0.581780194 1 23.25677357 -10.78009297 2.665487502 1.084165782 0.675245215 0.302264358 0.149197451 32393514.34 23895826.83 17758725.1 0.035606511 1.66E-11 10.78009297 -0.408920567 MISTPS(ph)PKK ddPTM_HeLa_A486_30min_R1 2 MISTPSPKK 9 1 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 MIS(0.012)T(0.118)PS(0.87)PKK;MIS(0.148)T(0.148)PS(0.703)PKK ; 109.24 0.00057407 1682480000 1555300 1221950 610850 1148580 1558760 1847460 2725190 2482110 1033500 3075690 TRUE FALSE FALSE 1446281.502 1125118.232 847387.4791 2673952.286 1363245.786 1619539.169 2043318.638 1916987.737 1123084.612 2305517.205 0.627313255 0.488011206 0.367547671 1.159805826 0.591297165 0.702462409 0.886273429 0.831478392 0.48712914 1 21.136659 -5.221723648 24.99999042 0.791119056 0.493662741 0.360183216 0.190851436 601.6540022 378724.3234 0.05015422 0.086868014 6.00E-06 5.221723648 -0.297456314 MITNSLNHDS(ph)PPS(ph)TPPRRPDTSTSK ddPTM_HeLa_A486_30min_R1 1 MITNSLNHDSPPSTPPRRPDTSTSK 25 2 J3QKZ5;J3QS16;Q8N9M1-3;Q8N9M1-2;Q8N9M1 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 2 0 MIT(0.002)NS(0.002)LNHDS(0.86)PPS(0.583)T(0.546)PPRRPDT(0.002)S(0.002)T(0.002)S(0.001)K 59.228 0.01612 84065000 72751 74700 68024 13255 83429 54240 81579 89500 62346 56077 TRUE FALSE FALSE 67651.53059 68780.49995 94364.71455 30858.30987 72964.55688 47548.42027 61167.07135 69122.80377 67750.20148 42034.9542 1.609411307 1.636269178 2.244910607 0.734110705 1.735806741 1.131163842 1.455147805 1.644412492 1.611758661 1 15.35930188 -5.244111885 24.99465662 1.370988761 1.810804152 0.311220268 0.336621183 1120.999682 1617023.261 0.088449826 0.152736328 5.70E-06 5.244111885 0.439815391 MITNSLNHDS(ph)PPST(ph)PPRRPDTSTSK ddPTM_HeLa_A486_30min_R1 2 MITNSLNHDSPPSTPPRRPDTSTSK 25 2 J3QKZ5;J3QS16;Q8N9M1-3;Q8N9M1-2;Q8N9M1 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 2 0 MIT(0.001)NS(0.001)LNHDS(0.997)PPS(0.279)T(0.706)PPRRPDT(0.005)S(0.005)T(0.004)S(0.002)K;MIT(0.001)NS(0.001)LNHDS(0.98)PPS(0.223)T(0.795)PPRRPDTSTSK ; 91.942 0.015499 709610000 169254 159367 135047 26920.7 189092 148059 195402 182888 148401 147243 TRUE FALSE FALSE 157390.1686 146738.1785 187340.8151 62672.7501 165374.3181 129792.9859 146510.3528 141248.3948 161264.5182 110372.3944 1.425992156 1.329482606 1.697352097 0.56782994 1.498330439 1.175955153 1.327418451 1.279743867 1.461094679 1 16.75201985 MITNSLNHDS(ph)PPSTPPR ddPTM_HeLa_A485_30min_R1 1 MITNSLNHDSPPSTPPR 17 0 J3QKZ5;J3QS16;Q8N9M1-3;Q8N9M1-2;Q8N9M1 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 0 MITNSLNHDS(0.996)PPS(0.003)T(0.001)PPR 70.452 0.0056305 231720000 63816 83932 91246 69818 112250 81926 101540 95570 89798 96092 TRUE FALSE FALSE 78011.64904 93747.11729 125001.6925 73631.98055 101073.9959 86215.51868 79845.14949 72131.30765 107819.6349 72138.03284 1.081421907 1.299551895 1.732812603 1.020709571 1.40111938 1.195146517 1.106838464 0.999906773 1.494629541 1 16.13847246 -6.451840286 6.156067753 1.150225574 1.313916307 0.102660298 0.221138632 0.547348179 37.42780248 0.078085822 0.068088755 3.53E-07 6.451840286 0.163690733 MITNSLNHDSPPS(ph)T(ph)PPRRPDTSTSK ddPTM_HeLa_A485_30min_R1 1 MITNSLNHDSPPSTPPRRPDTSTSK 25 2 J3QKZ5;J3QS16;Q8N9M1-3;Q8N9M1-2;Q8N9M1 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 2 0 MIT(0.001)NS(0.001)LNHDS(0.641)PPS(0.704)T(0.653)PPRRPDTSTSK 81.242 0.030994 462280000 75855 150260 97026 78219 170610 144190 149490 176390 108390 148220 TRUE FALSE FALSE 92728.68305 167831.5999 132919.955 82491.90591 153623.4694 151739.5654 117550.2403 133130.0759 130142.8788 111271.4818 0.833355336 1.508307405 1.19455545 0.741357126 1.380618528 1.363687829 1.056427383 1.196443813 1.169597786 1 16.76372436 -9.200759943 6.092913474 1 1.16983675 0.042252619 0.225291989 68053478.85 355037621 0.213433391 0.055108267 6.30E-10 9.200759943 0.16983675 MIY(ph)EDY(ph)ISILS(ph)PK ddPTM_HeLa_A485_30min_R1 1 MIYEDYISILSPK 13 0 Q9UGC6 Q9UGC6 RGS17 Regulator of G-protein signaling 17 3 0 MIY(0.71)EDY(0.71)IS(0.582)ILS(0.998)PK 51.013 0.0058736 0 84744 87824 119230 74084 106380 91854 79463 85035 107520 74230 TRUE FALSE FALSE 103595.0104 98094.25283 163338.1386 78131.02133 95788.43368 96663.33341 62485.0809 64180.03292 129098.2778 55725.8271 1.859012523 1.760301425 2.931102992 1.402061224 1.718923498 1.734623575 1.121294813 1.151710728 2.31666867 1 15.7660585 MIYAS(ph)SK ddPTM_HeLa_A486_30min_R1 2 MIYASSK 7 0 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;P60981;P60981-2;F6RFD5;Q9Y281;Q9Y281-3 P23528;P60981;Q9Y281 CFL1;DSTN;CFL2 Cofilin-1;Destrin;Cofilin-2 1 0 MIYAS(0.994)S(0.006)K;MIYAS(0.997)S(0.003)K ; 104.17 0.0036075 221570000 560410 493140 271460 229798 417390 489420 541130 535090 409150 689940 TRUE FALSE FALSE 521128.153 454061.7904 376576.582 534981.3573 365037.0542 429040.3365 405733.5505 413261.6879 444615.4514 517174.5332 1.007644653 0.877966259 0.72814216 1.034430976 0.705829523 0.829585196 0.784519586 0.799075866 0.859700977 1 18.98029171 -4.323295995 3.794065117 0.833406271 1.015680009 0.189044715 0.100102702 0.325861939 8.287423714 0.023607837 0.144432379 4.75E-05 4.323295995 0.182273738 MIYASSK ddPTM_HeLa_A485_30min_R1 3 MIYASSK 7 0 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;P60981;P60981-2;F6RFD5;Q9Y281;Q9Y281-3 P23528;P60981;Q9Y281 CFL1;DSTN;CFL2 Cofilin-1;Destrin;Cofilin-2 0 0 ;; ;; 185.22 3.02E-05 372112000 852620 1001350 889130 841430 1224030 1148960 1362920 1532640 944550 1218290 FALSE FALSE TRUE 1042282.377 1118449.172 1218056.187 887395.1903 1102161.275 1209117.769 1071721.008 1156757.637 1134112.521 914592.724 1.139613677 1.222893144 1.331801746 0.970262683 1.205084237 1.322028633 1.171801371 1.264778963 1.240019182 1 19.80276992 -9.987234359 4.55414615 0.999995088 1.208632403 0.289144964 0.097633575 65341234.59 5.081486288 3490.634453 0.023644914 1.03E-10 9.987234359 0.208637315 MIYASSK ddPTM_HeLa_A486_30min_R1 2 MIYASSK 7 0 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;P60981;P60981-2;F6RFD5;Q9Y281;Q9Y281-3 P23528;P60981;Q9Y281 CFL1;DSTN;CFL2 Cofilin-1;Destrin;Cofilin-2 0 0 ; ; 181.2 4.52E-05 118712000 258310 278730 203259 81038 305330 280660 305230 305190 245629 315850 FALSE FALSE TRUE 240203.8029 256642.4197 281966.3283 188660.5594 267032.6643 246035.0227 228858.2256 235704.8993 266920.3195 236759.1042 1.014549382 1.083981208 1.190941862 0.79684606 1.127866509 1.03917872 0.96662904 0.995547352 1.127391998 1 17.85306038 MK(ac)SSLLK(ac)EQMLRK ddPTM_HeLa_A485_30min_R1 1 MKSSLLKEQMLRK 13 3 Q6PCD5 Q6PCD5 RFWD3 E3 ubiquitin-protein ligase RFWD3 0 2 MK(1)SSLLK(1)EQMLRK 59.898 0.025017 22510000 34680 47039 31144 13368 96362 18135 70281 44772 32492 79486 FALSE TRUE FALSE 42394.44636 52539.80187 42665.46161 14098.25999 86767.86093 19084.52056 55264.89021 33791.5968 39012.84637 59671.60303 0.710462669 0.880482494 0.715004448 0.23626414 1.454089659 0.31982584 0.926150588 0.56629276 0.653792497 1 15.86475691 -4.874842763 14.98899008 0.718395183 0.796393147 0.003742952 0.331179874 5.426980733 687.6111279 0.081937232 0.170593401 1.33E-05 4.874842763 0.077997964 MKALS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 MKALSPVR 8 1 Q02535 Q02535 ID3 DNA-binding protein inhibitor ID-3 1 0 MKALS(1)PVR 79.693 0.0045641 320890000 231280 472470 287650 138120 439590 475960 549680 856100 310750 227190 TRUE FALSE FALSE 282727.4381 527721.2566 394063.7051 145665.1459 395822.8761 500880.5296 432236.3775 646140.1327 373114.6746 170555.7141 1.657683764 3.094128269 2.310469087 0.85406195 2.320783435 2.936756075 2.534282594 3.788440253 2.18764101 1 17.37988356 -6.002237926 24.99789278 2.662312411 2.02052959 0.056709812 0.84127601 205.6269828 2296921.337 0.260428537 0.290565826 9.95E-07 6.002237926 -0.641782821 MKEIAEAYLGK ddPTM_HeLa_A485_30min_R1 2 MKEIAEAYLGK 11 1 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 133.71 3.88E-05 537300000 850900 988410 635160 838630 1175130 1226380 1534570 1964740 879120 1230150 FALSE FALSE TRUE 1040179.769 1103995.951 870132.1152 884442.2334 1058129.931 1290591.36 1206696.583 1482884.434 1055551.32 923496.2442 1.126349756 1.195452562 0.94221511 0.957710699 1.145786935 1.397505803 1.306661062 1.605728712 1.142994708 1 19.81674657 -6.085101751 4.601785369 1.327864513 1.056314698 0.300464225 0.164868449 0.24066944 8.958032197 0.053921709 0.05476092 8.22E-07 6.085101751 -0.271549815 MKEIAEAYLGK ddPTM_HeLa_A486_30min_R1 2 MKEIAEAYLGK 11 1 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 120.14 0.00022714 298140000 731670 602150 345490 317900 804640 658660 719930 762170 465980 833520 FALSE FALSE TRUE 680383.7113 554433.441 479272.9805 740087.2658 703714.5482 577401.226 539795.8994 588640.5291 506371.5216 624801.1667 1.088960373 0.887375809 0.767080803 1.184516459 1.126301591 0.92413596 0.86394829 0.942124568 0.810452266 1 19.25303762 -6.50234259 23.70285333 0.898555984 1.002605795 0.152529334 0.120726257 852.4762172 983932.1201 0.045753052 0.039824841 3.15E-07 6.50234259 0.104049811 MKESS(ph)PLSSR ddPTM_HeLa_A485_30min_R1 1 MKESSPLSSR 10 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 MKES(0.312)S(0.687)PLS(0.001)SR 41.621 0.035028 250090000 428680 349750 296240 814710 615510 407060 726540 586890 458350 1130000 TRUE FALSE FALSE 524038.3871 390650.2201 405831.5036 859215.5443 554227.6632 428373.0322 571308.7937 442954.3073 550336.6408 848311.7961 0.617742662 0.46050311 0.478398987 1.012853468 0.653330138 0.504971208 0.673465578 0.522159788 0.648743355 1 19.6942351 -8.048599443 21.31159336 1.000000003 0.616396892 0.367438581 0.150480276 2228.506759 977234.3857 0.151443848 0.039102599 8.94E-09 8.048599443 -0.383603111 MKETIQGTGSWGPEPPGPGIPPAYS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 MKETIQGTGSWGPEPPGPGIPPAYSSPR 28 1 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 1 0 MKETIQGTGSWGPEPPGPGIPPAYS(0.5)S(0.5)PR 123.54 3.91E-06 812110000 250400 345290 268640 214290 357750 361010 393240 450820 254840 298980 TRUE FALSE FALSE 306100.6161 385668.6619 368021.115 225996.1201 322131.1539 379911.9254 309221.0615 340255.6881 305984.0505 224449.7883 1.363782156 1.71828481 1.639658998 1.006889433 1.435203643 1.692636595 1.377684799 1.515954596 1.363262816 1 17.77603321 -8.144281048 3.638074383 1.000047265 1.47014221 0.343435098 0.194379851 0.897631615 20.41729926 0.193426187 0.05101486 7.17E-09 8.144281048 0.470094945 MKETIQGTGSWGPEPPGPGIPPAYS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 MKETIQGTGSWGPEPPGPGIPPAYSSPR 28 1 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 1 0 MKETIQGTGSWGPEPPGPGIPPAYS(0.5)S(0.5)PR 180.61 1.56E-20 503150000 677070 554110 385510 192690 561930 511560 565470 549420 448110 659000 TRUE FALSE FALSE 629610.8894 510200.3056 534789.7963 448592.058 491447.4996 448448.9284 423983.4251 424329.0598 486952.5356 493982.1106 1.274562127 1.032831543 1.082609643 0.908113975 0.994869023 0.907824228 0.858297124 0.858996815 0.985769576 1 18.91409927 -1 0.574197216 0.913807285 19.67201502 0.750032398 0.059049635 69.29561416 0.58751771 0.027168469 1617.132557 0.1 1 18.75820773 MKETIQGTGSWGPEPPGPGIPPAYSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 MKETIQGTGSWGPEPPGPGIPPAYSSPR 28 1 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 1 0 MKETIQGTGSWGPEPPGPGIPPAYS(0.206)S(0.794)PR 143.69 2.46E-09 678190000 99248 126670 103870 82498 134640 128010 137540 160800 86764 103400 TRUE FALSE FALSE 121325.3752 141482.9546 142295.8354 87004.65684 121234.7689 134712.4057 108153.4554 121363.5479 104176.739 77624.28294 1.562982235 1.822663595 1.833135586 1.120843292 1.561814992 1.735441547 1.3932941 1.563473997 1.342063785 1 16.24422042 -11.79665287 0.145656644 1.82E-10 1.790460843 0.465317477 0.195116154 59.90991552 0.974882642 20.25684094 1.277858043 1.60E-12 11.79665287 1.790460843 MKEVVYWS(ph)PK ddPTM_HeLa_A485_30min_R1 2 MKEVVYWSPK 10 1 E6ZCI6;C0MHM2;Q86VZ5 E6ZCI6 SGMS1 Phosphatidylcholine:ceramide cholinephosphotransferase 1 1 0 MKEVVYWS(1)PK;MKEVVY(0.004)WS(0.996)PK ; 83.692 0.0025712 449000000 587520 550970 262262 694330 569800 653040 913540 938230 424410 1112500 TRUE FALSE FALSE 718211.7971 615401.1487 359283.6274 732259.4898 513068.7113 687232.1646 718354.7161 708127.6214 509585.1941 835174.224 0.859954458 0.736853618 0.430190034 0.876774532 0.614325367 0.822860841 0.860125583 0.84788012 0.61015436 1 19.67171766 -6.293927896 22.6903025 0.820691868 0.699895128 0.150459352 0.147346749 444.3785487 310355.8713 0.050960677 0.044949708 5.08E-07 6.293927896 -0.12079674 MKEVVYWS(ph)PK ddPTM_HeLa_A486_30min_R1 1 MKEVVYWSPK 10 1 E6ZCI6;C0MHM2;Q86VZ5 E6ZCI6 SGMS1 Phosphatidylcholine:ceramide cholinephosphotransferase 1 1 0 MKEVVYWS(1)PK 88.311 0.0017063 311270000 378360 274020 146230 153490 273440 327770 412840 328320 236400 618530 TRUE FALSE FALSE 351838.9179 252305.6572 202854.1722 357332.477 239142.6055 287333.0699 309543.0654 253568.7032 256891.3423 463646.062 0.75885238 0.544177289 0.437519455 0.770700986 0.515786987 0.61972503 0.66762794 0.546901449 0.554067776 1 18.82266438 -10.21657458 5.095436896 1.000040908 0.598485795 0.585667489 0.100468816 4.49E-05 6.91E-06 0.093642676 0.022709376 6.07E-11 10.21657458 -0.401555112 MKFNPFVTSDR ddPTM_HeLa_A485_30min_R1 1 MKFNPFVTSDR 11 1 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 0 101.72 0.0014816 97327000 66767 124390 80977 43431 106180 117320 124450 179700 68597 71653 FALSE FALSE TRUE 81619.08881 138936.3285 110933.762 45803.52556 95608.34638 123462.6938 97860.24084 135628.2932 82363.78869 53791.22578 1.517330896 2.582880878 2.062302177 0.851505518 1.777396685 2.295219936 1.819260287 2.521383205 1.531175159 1 15.71508324 -6.053147495 24.95324205 1.939687508 1.769757206 0 0.564165643 1850.047466 868609.3834 0.187941171 0.187942552 8.85E-07 6.053147495 -0.169930302 MKGDYFR ddPTM_HeLa_A485_30min_R1 1 MKGDYFR 7 1 P31946-2;P31946;P27348;E9PG15 P31946-2;P27348 YWHAB;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein theta" 0 0 86.833 0.009679 524230000 248910 339180 321650 285010 411800 382190 473630 528830 285580 366560 FALSE FALSE TRUE 304279.1708 378844.1505 440641.72 300579.3746 370799.7461 402200.8774 372435.0813 399133.6133 342893.2865 275183.338 1.105732538 1.376697271 1.601265989 1.092287697 1.34746438 1.461574237 1.353407092 1.450427981 1.246053954 1 18.07003359 -8.046344258 7.791829976 1.000003539 1.353128505 0.344032468 0.14582042 0.744308553 124.0687486 0.138718002 0.035883998 8.99E-09 8.046344258 0.353124966 MKGDYYR ddPTM_HeLa_A485_30min_R1 1 MKGDYYR 7 1 E7EX29;P63104;E7ESK7;B0AZS6;Q04917;B7Z2E6;H0YB80;P63104-2;A2IDB2;P31947-2;P31947;P61981 E7EX29;P31947-2;P61981 YWHAZ;YWHAH;SFN;YWHAG "14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 76.478 0.020143 1406700000 1065600 1954500 1752600 542530 1935600 1710500 1479400 1848400 1633800 834760 FALSE FALSE TRUE 1302639.044 2183061.773 2400959.672 572167.0401 1742884.868 1800059.135 1163314.104 1395077.002 1961688.674 626669.6946 2.078669281 3.48359238 3.831300113 0.913028099 2.781185819 2.872420911 1.856343325 2.226175949 3.130339142 1 19.2573457 -10.45703042 0.289281701 7.90E-33 2.742120006 0.238724493 0.814842784 33.23061943 1.898421475 28.29955828 0.983379847 3.49E-11 10.45703042 2.742120006 MKGDYYR ddPTM_HeLa_A486_30min_R1 1 MKGDYYR 7 1 E7EX29;P63104;E7ESK7;B0AZS6;Q04917;B7Z2E6;H0YB80;P63104-2;A2IDB2;P31947-2;P31947;P61981 E7EX29;P31947-2;P61981 YWHAZ;YWHAH;SFN;YWHAG "14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 76.478 0.020143 813240000 1110200 1477000 1498400 173010 1803700 970210 795020 1060400 1305900 650550 FALSE FALSE TRUE 1032380.713 1359957.141 2078620.609 402776.0234 1577463.127 850515.3546 596097.5871 818970.0684 1419096.463 487648.0456 2.117061111 2.788808759 4.262542683 0.825956398 3.234839432 1.744117222 1.222393061 1.679428587 2.910083361 1 18.89548075 -5.267315952 24.9998092 1.863801395 3.029404634 0.299099364 0.875690398 626.1703593 2663822.265 0.242102714 0.370119431 5.40E-06 5.267315952 1.16560324 MKGYPHWPAR ddPTM_HeLa_A485_30min_R1 1 MKGYPHWPAR 10 1 P51858;H3BPQ6;M0R0J3;Q9Y3E1;Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;O75475;O75475-3;O75475-2 P51858;Q7Z4V5-2;O75475 HDGF;HDGFRP3;HDGFRP2;PSIP1 Hepatoma-derived growth factor;Hepatoma-derived growth factor-related protein 3;Hepatoma-derived growth factor-related protein 2;PC4 and SFRS1-interacting protein 0 0 79.974 0.022796 13211000 21708 33550 27583 18656 30437 35194 40677 47314 23396 23851 FALSE FALSE TRUE 26536.86971 37473.38065 37787.09952 19675.13004 27406.58541 37036.70342 31986.02665 35710.16731 28091.3626 17905.38465 1.482060857 2.092855384 2.110376307 1.098838725 1.530633715 2.068467344 1.786391484 1.994381468 1.568877919 1 14.12810589 -8.023296556 19.08626465 0.999999967 1.77321415 0.36219022 0.308303362 91.21613546 74732.73493 0.308853486 0.079746586 9.48E-09 8.023296556 0.773214183 MKLNISFPATGCQK ddPTM_HeLa_A485_30min_R1 1 MKLNISFPATGCQK 14 1 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 0 134.81 2.65E-05 75160000 160690 237410 154380 85159 387480 220190 314810 440160 119220 142320 FALSE FALSE TRUE 196434.9361 265173.0343 211491.5863 89811.02054 348901.1307 231718.8079 247548.2717 332210.0699 143146.3604 106842.2432 1.838551216 2.481911895 1.979475346 0.840594673 3.265572869 2.168793924 2.316951276 3.109351319 1.339791792 1 16.70512265 -5.765408297 24.99926198 2.309823762 1.848784879 0.054229672 0.752577254 279.2634749 1759012.597 0.222911985 0.262192756 1.72E-06 5.765408297 -0.461038883 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_A485_30min_R1 4 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 40 3 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 MKMDRDPLGGLADMFGQMPGSGIGT(0.003)GPGVIQDRFS(0.832)PT(0.165)MGR;MKMDRDPLGGLADMFGQMPGSGIGT(0.004)GPGVIQDRFS(0.756)PT(0.24)MGR;MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.996)PT(0.004)MGR;MKMDRDPLGGLADMFGQMPGSGIGT(0.006)GPGVIQDRFS(0.916)PT(0.079)MGR ;;; 217.99 3.05E-39 1011210000 198572 454184 267843 135164 399854 543343 641430 1165712 269696 207321.4 TRUE FALSE FALSE 242743.6563 507296.8679 366929.2716 142547.6671 360043.1318 571791.5993 504383.2405 879819.3042 323821.5134 155639.9904 1.559648363 3.259424949 2.357551363 0.915880724 2.313307337 3.673809011 3.240704648 5.652912865 2.080580399 1 17.24785327 -6.187121987 5.430246767 3.425775297 2.081341094 0.128478151 1.259700674 0.361107349 19.3308741 0.409487221 0.407979682 6.50E-07 6.187121987 -1.344434203 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_A486_30min_R1 2 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 40 3 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 MKMDRDPLGGLADMFGQMPGS(0.018)GIGT(0.064)GPGVIQDRFS(0.729)PT(0.189)MGR;MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(0.996)PT(0.003)MGR ; 165.19 2.40E-14 141513000 86141 57868 49299 34411 103441 55042 87001 85100 49486 101914 TRUE FALSE FALSE 80102.96073 53282.32893 68388.89307 80110.54704 90466.46523 48251.47767 65232.4296 65724.58772 53775.48632 76394.07105 1.048549444 0.697466809 0.895212052 1.048648749 1.184207936 0.63161286 0.853893878 0.860336238 0.703922249 1 16.22117305 -6.27374801 24.99860154 0.803970381 0.959087932 0.229763389 0.149346283 1327.224545 2695561.424 0.054105645 0.048051921 5.32E-07 6.27374801 0.155117551 MKPLVVFVLGGPGAGK ddPTM_HeLa_A485_30min_R1 2 MKPLVVFVLGGPGAGK 16 1 P30085;P30085-2 P30085 CMPK1 UMP-CMP kinase 0 0 ; ; 145.29 2.12E-08 58097000 170801 185098 145978 170218 223343 216383 287410 308500 119669 252110 FALSE FALSE TRUE 208795.0932 206743.601 199981.3369 179516.5783 201106.1867 227712.4793 226002.5056 232839.8913 143685.4706 189263.6167 1.103197206 1.092357868 1.056628528 0.9485002 1.062571825 1.203149782 1.194114904 1.230241159 0.759181681 1 17.53003757 -7.761771243 25 0.879590849 1.107653583 0.485814458 0.095309595 8.012641843 603181.0115 0.080663008 0.025762876 1.73E-08 7.761771243 0.228062734 MKPLVVFVLGGPGAGK ddPTM_HeLa_A486_30min_R1 1 MKPLVVFVLGGPGAGK 16 1 P30085;P30085-2 P30085 CMPK1 UMP-CMP kinase 0 0 147.68 1.67E-08 22221000 86243 75660 53733 34393 74063 82462 104990 92041 72182 127520 FALSE FALSE TRUE 80197.81106 69664.42605 74539.85662 80068.64213 64773.32793 72288.67685 78720.39153 71085.27354 78438.79388 95588.16198 0.838993128 0.728797631 0.779802175 0.837641822 0.677629181 0.756251353 0.823537035 0.743661894 0.820591088 1 16.54454434 -8.125233489 4.527901784 0.999988678 0.772354357 0.663712817 0.04832746 0.502297986 17.35595126 0.045419197 0.011870527 7.49E-09 8.125233489 -0.227634321 MKPPAACAGDMADAAS(ph)PCSVVNDLR ddPTM_HeLa_A485_30min_R1 3 MKPPAACAGDMADAASPCSVVNDLR 25 1 P52888 P52888 THOP1 Thimet oligopeptidase 1 0 MKPPAACAGDMADAAS(0.99)PCS(0.01)VVNDLR;MKPPAACAGDMADAAS(0.999)PCS(0.001)VVNDLR;MKPPAACAGDMADAAS(1)PCSVVNDLR ;; 196.84 9.28E-23 508760000 508970 552050 560850 608400 740640 578890 813290 686810 573800 825170 TRUE FALSE FALSE 622188.6206 616607.4453 768331.7539 641635.3514 666899.2811 609199.7853 639523.9475 518368.7706 688956.3968 619470.3051 1.004388129 0.995378536 1.240304414 1.035780644 1.07656376 0.983420481 1.032372242 0.836793574 1.112170174 1 19.2406756 -6.26184115 23.192198 0.985214695 1.073817229 0.153788902 0.089854059 23.3996605 1350661.081 0.030312793 0.028381464 5.47E-07 6.26184115 0.088602534 MKPPAACAGDMADAAS(ph)PCSVVNDLR ddPTM_HeLa_A486_30min_R1 4 MKPPAACAGDMADAASPCSVVNDLR 25 1 P52888 P52888 THOP1 Thimet oligopeptidase 1 0 MKPPAACAGDMADAAS(1)PCSVVNDLR;MKPPAACAGDMADAAS(0.993)PCS(0.007)VVNDLR;MKPPAACAGDMADAAS(1)PCSVVNDLR;MKPPAACAGDMADAAS(1)PCSVVNDLR ;;; 209.47 4.64E-29 753320000 631680 709990 494550 230053 730190 710480 750630 819030 597500 820120 TRUE FALSE FALSE 587402.494 653727.8067 686053.0045 535575.0102 638602.7614 622828.2012 562814.4346 632554.7483 649291.7811 614756.6139 0.955504147 1.063392881 1.115974987 0.871198452 1.038789575 1.013129728 0.915507734 1.028951513 1.056176975 1 19.22965583 -3.886312784 10.99922138 1.009175419 5.94E-05 0.057125113 0.067626943 277394.243 606682.0662 0.016922752 6560716.622 0.000129923 3.886312784 -1.009115996 MKQPPAT(ph)TPPFK ddPTM_HeLa_A485_30min_R1 2 MKQPPATTPPFK 12 1 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4;Q63HN8-5 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 MKQPPAT(0.5)T(0.5)PPFK;MKQPPAT(0.657)T(0.343)PPFK ; 72.417 0.012821 952640000 1666510 1741850 1115170 1745330 1978030 1931890 2555400 2899300 1518490 2495200 TRUE FALSE FALSE 2037219.4 1945544.205 1527717.789 1840672.958 1781090.388 2033040.773 2009417.914 2188242.129 1823237.015 1873192.561 1.087565391 1.038624777 0.815569003 0.982639477 0.950831444 1.08533464 1.072723625 1.168188565 0.973331334 1 20.83706778 -6.263261402 24.54757944 1.071227921 0.970140195 0.204331195 0.081951139 184.1330477 2480746.689 0.028759238 0.026627304 5.45E-07 6.263261402 -0.101087726 MKQPPAT(ph)TPPFK ddPTM_HeLa_A486_30min_R1 2 MKQPPATTPPFK 12 1 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4;Q63HN8-5 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 MKQPPAT(0.579)T(0.421)PPFK;MKQPPAT(0.585)T(0.415)PPFK ; 73.91 0.011748 733280000 1678240 1297760 657720 497370 1262870 1328730 1535530 1642050 1124470 1929310 TRUE FALSE FALSE 1560604.042 1194920.771 912406.7984 1157902.496 1104469.069 1164804.802 1151324.153 1268191.061 1221939.965 1446198.218 1.079107983 0.82624965 0.630900237 0.800652691 0.763705179 0.805425416 0.796103977 0.876913721 0.844932561 1 20.46383387 -8.323387263 0.930379783 0.999297793 0.806118242 0.202648886 0.105089133 1.76512765 2.811964269 0.104863625 0.034833513 4.75E-09 8.323387263 -0.193179551 MKS(ph)ILDGLADT(ph)TFRTITT(ph)DLLGSPFQEK ddPTM_HeLa_A486_30min_R1 1 MKSILDGLADTTFRTITTDLLGSPFQEK 28 2 P21554-3 P21554-3 3 0 MKS(0.935)ILDGLADT(0.328)T(0.328)FRT(0.328)IT(0.082)T(0.5)DLLGS(0.5)PFQEK 40.756 0.031672 163630000 34606 37433 25052 8863.5 39922 35470 40468 40539 36000 30358 TRUE FALSE FALSE 32180.29811 34466.67275 34752.80532 20634.67594 34914.6105 31094.07203 30342.47837 31309.15466 39120.50899 22756.1592 1.414135743 1.514608526 1.527182378 0.906773228 1.534292768 1.366402465 1.333374323 1.375854088 1.719117389 1 14.47396946 -10.43731452 3.151692032 0.993263569 1.400991485 0.274294917 0.199657489 91001191.12 115887580 5475693.287 0.048422723 3.65E-11 10.43731452 0.407727917 MKS(ph)LEQDALR ddPTM_HeLa_A485_30min_R1 3 MKSLEQDALR 10 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 MKS(1)LEQDALR;MKS(1)LEQDALR;MKS(1)LEQDALR ;; 206.55 2.71E-14 1121530000 1557850 1205690 664860 1793220 1343900 1439570 2392270 2319450 1694150 3931400 TRUE FALSE FALSE 1904388.358 1346684.957 910819.3811 1891179.068 1210096.597 1514943.659 1881141.971 1750601.251 2034150.365 2951374.332 0.645254767 0.456290801 0.308608559 0.640779127 0.410011222 0.513301089 0.637378306 0.59314782 0.689221406 1 21.49295548 -8.314750314 0.557501012 1.014849427 0.479700986 0.699174433 0.098292821 0.740263728 0.474174642 0.121052368 0.046271558 4.84E-09 8.314750314 -0.535148441 MKS(ph)LEQDALR ddPTM_HeLa_A486_30min_R1 4 MKSLEQDALR 10 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 MKS(1)LEQDALR;MKS(1)LEQDALR;MKS(1)LEQDALR;MKS(1)LEQDALR ;;; 176.56 3.14E-08 1602430000 1111130 1011240 599020 418164 1199680 1636600 1723130 1685590 1087130 1921300 TRUE FALSE FALSE 1033245.525 931105.6595 830976.5863 973506.9248 1049204.948 1434692.932 1291984.649 1301817.953 1181363.304 1440193.974 0.717434973 0.646514064 0.576989351 0.675955421 0.728516413 0.996180346 0.897090719 0.903918483 0.820280688 1 20.45783171 -6.078877026 3.89798715 0.915120602 0.651756195 0.826846724 0.058787692 0.09680521 2.770297059 0.020221268 0.020733801 8.34E-07 6.078877026 -0.263364407 MKS(ph)SSSVTTSETQPCTPSSSDYSDLQR ddPTM_HeLa_A485_30min_R1 4 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 MKS(0.876)S(0.037)S(0.037)S(0.037)VT(0.008)T(0.002)S(0.002)ETQPCTPSSSDYSDLQR;MKS(0.53)S(0.114)S(0.177)S(0.177)VT(0.002)TSETQPCTPSSSDYSDLQR;MKS(0.55)S(0.11)S(0.11)S(0.151)VT(0.03)T(0.042)S(0.008)ETQPCTPSSSDYSDLQR;MKS(0.395)S(0.115)S(0.185)S(0.3)VT(0.005)TSETQPCTPSSSDYSDLQR ;;; 217.83 2.03E-38 4240250000 758590 750630 702090 792250 1065480 904960 1259460 1391820 783640 1150890 TRUE FALSE FALSE 927335.7284 838409.6489 961822.3074 835528.6114 959397.0701 952342.3063 990366.0822 1050473.963 940909.36 863994.3036 1.073312318 0.970387936 1.113227603 0.96705338 1.110420597 1.102255307 1.146264597 1.215834362 1.089022643 1 19.72066227 -5.909935201 8.332282739 1.124181818 1.032677549 0.252263497 0.065083827 0.308929433 25.31291164 0.019341903 0.021959009 1.23E-06 5.909935201 -0.091504269 MKS(ph)SSSVTTSETQPCTPSSSDYSDLQR ddPTM_HeLa_A486_30min_R1 5 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 MKS(0.318)S(0.194)S(0.194)S(0.194)VT(0.026)T(0.031)S(0.037)ET(0.008)QPCTPSSSDYSDLQR;MKS(0.546)S(0.132)S(0.132)S(0.132)VT(0.04)T(0.008)S(0.011)ETQPCTPSSSDYSDLQR;MKS(0.848)S(0.051)S(0.051)S(0.051)VTTSETQPCTPSSSDYSDLQR;MKS(0.784)S(0.056)S(0.056)S(0.056)VT(0.011)T(0.015)S(0.019)ET(0.002)QPCTPSSSDYSDLQR;MKS(0.52)S(0.146)S(0.146)S(0.146)VT(0.01)T(0.013)S(0.019)ETQPCTPSSSDYSDLQR ;;;; 221.23 1.60E-38 4589610000 1230128 1099683 775151 566008 1416114 1570491 1919825 2092540 1145880 1666943 TRUE FALSE FALSE 1143902.38 1012540.114 1075310.226 1317695.228 1238491.777 1376739.788 1439464.479 1616114.322 1245205.801 1249529.623 0.915466395 0.810337023 0.860572016 1.054553013 0.9911664 1.101806442 1.152005085 1.293378158 0.99653964 1 20.25295367 -5.57989614 1.149539949 1.128510753 0.846043266 0.553576699 0.090156474 0.33864263 0.924967508 0.035544581 0.064685653 2.63E-06 5.57989614 -0.282467487 MKSS(ph)SSVTTSETQPCTPSSSDYSDLQR ddPTM_HeLa_A485_30min_R1 1 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 MKS(0.174)S(0.228)S(0.228)S(0.228)VT(0.047)T(0.047)S(0.047)ET(0.002)QPCTPSSSDYSDLQR 137.5 2.94E-06 531170000 92902 83603 78128 86280 115510 93101 147360 147840 77584 126850 TRUE FALSE FALSE 113567.7294 93379.6436 107030.7984 90993.25793 104009.4188 97975.6244 115875.3322 111582.0082 93154.39716 95228.6295 1.192579689 0.980583718 1.123935091 0.955524178 1.092207452 1.028846313 1.216811927 1.171727544 0.978218396 1 16.53910775 MKSS(ph)SSVTTSETQPCTPSSSDYSDLQR ddPTM_HeLa_A486_30min_R1 1 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 MKS(0.175)S(0.217)S(0.217)S(0.217)VT(0.056)T(0.056)S(0.056)ET(0.006)QPCTPSSSDYSDLQR 75.534 0.010969 240790000 53482 62554 35929 26443 66040 78248 92382 99689 54252 90832 TRUE FALSE FALSE 49733.18798 57596.99322 49841.67101 61560.64036 57756.6474 68594.55733 69267.04648 76991.9909 58954.60704 68087.07598 0.730435068 0.845931366 0.732028367 0.90414575 0.848276219 1.007453417 1.017330315 1.130787154 0.865870743 1 16.05509336 -5.942434161 1.245330331 1.018238093 0.779730709 0.629234249 0.074983477 0.274643745 0.893269607 0.031048207 0.037382612 1.14E-06 5.942434161 -0.238507384 MKTPADTGFAFPDWAYKPES(ph)SPGSR ddPTM_HeLa_A485_30min_R1 2 MKTPADTGFAFPDWAYKPESSPGSR 25 2 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 MKTPADTGFAFPDWAYKPES(0.493)S(0.493)PGS(0.014)R;MKTPADTGFAFPDWAYKPES(0.594)S(0.392)PGS(0.014)R ; 149.54 1.52E-09 1581330000 733290 850080 517040 541850 762730 1005270 1331740 1482240 526020 774580 TRUE FALSE FALSE 896407.8307 949489.4613 708314.6118 571449.8935 686789.9231 1057904.383 1047202.87 1118718.316 631587.3891 581491.4611 1.541566628 1.632851942 1.218099765 0.982731358 1.181083419 1.819294785 1.800891225 1.923877461 1.086150754 1 19.14939848 -6.24982368 24.58133223 1.600963218 1.305704578 0.072865694 0.332907686 1201.981173 2543653.268 0.11294142 0.112005125 5.63E-07 6.24982368 -0.29525864 MKVELCSFSGYK ddPTM_HeLa_A486_30min_R1 2 MKVELCSFSGYK 12 1 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 0 ; ; 125.97 0.00048328 71141000 217834 170761 135622 101532 227682 186862 236030 213314 136554 224211 FALSE FALSE TRUE 202564.9615 157229.2765 188138.4705 236371.6271 199124.0005 163808.8663 176972.7975 164747.0588 148390.6107 168067.1062 1.205262386 0.935514867 1.119424703 1.406412191 1.184788654 0.974663454 1.052988901 0.980245704 0.882924767 1 17.35867787 -6.263402981 24.5564938 0.981606434 1.167531125 0.414587868 0.114084757 162.6863582 2034516.049 0.042881393 0.039715615 5.45E-07 6.263402981 0.185924691 MKVEMMSEAALNGNGDDLNNYDS(ph)DDQEKQSK ddPTM_HeLa_A485_30min_R1 1 MKVEMMSEAALNGNGDDLNNYDSDDQEKQSK 31 2 J3KP58;P30622-2;P30622-1;P30622;F5H0N7;A0A3B3ITA2 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 MKVEMMSEAALNGNGDDLNNYDS(1)DDQEKQSK 378.7 2.09E-170 306830000 102600 80313 34346 155310 117160 139720 269660 348600 85902 251700 TRUE FALSE FALSE 125423.016 89704.90672 47052.01466 163794.192 105495.139 147035.5232 212044.9381 263105.3034 103141.7435 188955.8222 0.663768994 0.474740104 0.249010663 0.866838556 0.55830584 0.778147619 1.122193196 1.392417023 0.5458511 1 17.52768945 -6.514530949 2.986624444 1.046010973 0.557269754 0.430905463 0.243105892 0.23938824 4.355827827 0.097436531 0.077689185 3.06E-07 6.514530949 -0.48874122 MKVEMMSEAALNGNGDDLNNYDS(ph)DDQEKQSK ddPTM_HeLa_A486_30min_R1 1 MKVEMMSEAALNGNGDDLNNYDSDDQEKQSK 31 2 J3KP58;P30622-2;P30622-1;P30622;F5H0N7;A0A3B3ITA2 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 MKVEMMSEAALNGNGDDLNNY(0.101)DS(0.851)DDQEKQS(0.048)K 46.034 0.020112 276480000 84781 78418 44232 35580 63524 72335 83519 94367 54653 92415 TRUE FALSE FALSE 78838.28971 72203.87209 61359.81497 82832.03811 55556.22758 63411.04315 62621.66283 72881.69412 59390.36604 69273.68248 1.138069854 1.042298742 0.885759393 1.195721595 0.801981728 0.915369891 0.903974794 1.052083439 0.85732942 1 16.08001975 -1 0.62194242 0.941007911 15.62499496 0.233504528 0.105993146 278.7763232 1.998145474 0.044865019 5596.830367 0.1 1 14.68398705 MKVQGS(ph)PLKK ddPTM_HeLa_A485_30min_R1 2 MKVQGSPLKK 10 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 MKVQGS(1)PLKK;MKVQGS(1)PLKK ; 87.498 0.0016263 2523400000 4226300 4662200 1537640 2626900 3859000 6182400 8988000 13932400 2795900 3921500 TRUE FALSE FALSE 5166425.854 5207403.734 2106477.023 2770400.895 3474784.41 6506100.904 7067640.375 10515457.05 3357011.484 2943942.22 1.754934529 1.768853919 0.715529336 0.941051382 1.180316783 2.209996127 2.40074018 3.571896549 1.140311607 1 21.48931793 -6.265882233 20.94748719 2.246342437 1.250416135 0.204095405 0.739524717 52.1027141 245653.2546 0.252802192 0.231503054 5.42E-07 6.265882233 -0.995926301 MKYNTEGRVS(ph)PSPSQESLSSSK ddPTM_HeLa_A485_30min_R1 2 MKYNTEGRVSPSPSQESLSSSK 22 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 MKYNT(0.006)EGRVS(0.975)PS(0.019)PSQESLSSSK;MKYNT(0.005)EGRVS(0.995)PSPSQESLSSSK ; 195.09 1.03E-20 1034030000 894010 832280 518790 718520 901320 1028500 1276810 1443850 647730 1017690 TRUE FALSE FALSE 1092879.44 929607.9061 710712.0097 757770.9282 811581.4161 1082350.67 1004009.113 1089743.524 777723.4697 763998.6122 1.43047307 1.216766485 0.930253011 0.991848566 1.06228127 1.416691932 1.314150441 1.42636846 1.017964506 1 19.54321049 -6.234498343 24.81179502 1.266627845 1.112985286 0.06411678 0.185855777 1457.65017 1342447.515 0.062992823 0.06297582 5.83E-07 6.234498343 -0.153642559 MKYNTEGRVS(ph)PSPSQESLSSSK ddPTM_HeLa_A486_30min_R1 2 MKYNTEGRVSPSPSQESLSSSK 22 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 MKYNT(0.002)EGRVS(0.97)PS(0.029)PSQESLSSSK;MKYNT(0.001)EGRVS(0.967)PS(0.03)PS(0.001)QESLSSSK ; 216.64 4.01E-36 802470000 677560 549150 280550 172403 508810 557450 735910 729510 382970 796470 TRUE FALSE FALSE 630066.5429 505633.354 389186.4734 401362.8968 444990.3053 488677.4867 551777.5343 563416.4981 416166.148 597028.7279 1.055337061 0.846916288 0.651872272 0.67226731 0.74534153 0.818515867 0.924206003 0.943700817 0.697062182 1 19.18744083 -6.576053668 5.60782446 0.885787994 0.782399344 0.11097071 0.127565264 0.45776346 31.09506301 0.051777142 0.040096123 2.65E-07 6.576053668 -0.103388651 MLAES(ph)DES(ph)GDEESVSQTDKTELQNTLR ddPTM_HeLa_A485_30min_R1 7 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 MLAES(1)DES(0.999)GDEES(0.001)VSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(0.997)DES(0.993)GDEES(0.006)VS(0.002)QT(0.001)DKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(0.999)GDEES(0.001)VSQTDKTELQNTLR;MLAES(0.97)DES(0.659)GDEES(0.194)VS(0.14)QT(0.032)DKT(0.003)ELQNT(0.003)LR ;;;;;; 160.53 5.97E-14 2777746000 765641 834865 728127 922048 1138138 970057 1316004 1412770 841565 1268309 TRUE FALSE FALSE 935955.199 932495.1994 997491.4772 972417.1475 1024820.984 1020847.685 1034828.995 1066285.942 1010459.376 952142.9078 0.982998656 0.979364748 1.047627902 1.021293274 1.076331059 1.072158051 1.086842097 1.11988015 1.0612476 1 19.8608186 -5.017776427 0.928847047 1.077281691 0.9666959 0.497156826 0.031781091 0.623374446 0.856644346 0.011884277 0.055457743 9.60E-06 5.017776427 -0.110585791 MLAES(ph)DES(ph)GDEESVSQTDKTELQNTLR ddPTM_HeLa_A486_30min_R1 9 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 MLAES(1)DES(0.991)GDEES(0.006)VS(0.001)QT(0.001)DKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(0.917)DES(0.682)GDEES(0.392)VS(0.007)QT(0.001)DKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(1)DES(1)GDEESVSQTDKTELQNTLR;MLAES(0.999)DES(0.995)GDEES(0.005)VS(0.001)QTDKTELQNTLR;MLAES(0.998)DES(0.991)GDEES(0.009)VS(0.001)QTDKTELQNTLR;MLAES(1)DES(0.995)GDEES(0.003)VS(0.001)QT(0.001)DKTELQNTLR ;;;;;;;; 128.35 3.34E-06 3340560000 1608573 1575945 1128873 676905 1808394 1724497 2009779 1994473 1425086 1976590 TRUE FALSE FALSE 1495820.339 1451061.379 1566002.858 1575869.049 1581568.362 1511746.094 1506911.037 1540375.037 1548613.602 1481638.999 1.009571387 0.979362301 1.056939551 1.063598522 1.067445149 1.020320129 1.017056812 1.039642611 1.045203051 1 20.49876255 -4.760560943 24.99992052 1.040667169 0.994466838 0.403005946 0.02147298 21.49690358 611691.2901 0.005766081 0.013567385 1.74E-05 4.760560943 -0.046200331 MLAES(ph)DESGDEESVSQTDKTELQNTLR ddPTM_HeLa_A485_30min_R1 2 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 MLAES(0.995)DES(0.005)GDEESVSQTDKTELQNTLR;MLAES(1)DESGDEESVSQTDKTELQNTLR ; 120.91 3.40E-05 165518000 102612 135764 130084 139248 173513 170560 199729 219388 144770 209371 TRUE FALSE FALSE 125437.6854 151640.4188 178207.4848 146854.7656 156237.4365 179490.2579 157055.2675 165582.749 173824.0111 157178.6629 0.798057975 0.964764657 1.133789292 0.934317438 0.994011742 1.141950533 0.999214936 1.053468365 1.105900813 1 17.26204586 -4.358522597 3.267696733 1.043635428 0.786530403 0.578164661 0.063941393 0.190157904 3.277038879 0.016099481 0.105293617 4.38E-05 4.358522597 -0.257105025 MLAESDES(ph)GDEESVSQTDKTELQNTLR ddPTM_HeLa_A485_30min_R1 2 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 MLAESDES(1)GDEESVSQTDKTELQNTLR;MLAES(0.003)DES(0.996)GDEESVSQTDKTELQNTLR ; 214 1.34E-29 416090000 158211 166727 171127 185204 243070 220670 254880 293860 195338 245620 TRUE FALSE FALSE 193404.4911 186224.2723 234433.9985 195321.2256 218869.0973 232223.94 200422.8058 221790.3742 234540.5449 184391.4543 1.048879905 1.009939821 1.271392969 1.059274825 1.186980699 1.25940728 1.086941944 1.202823499 1.271970796 1 17.49241227 -4.739340894 24.99684569 1.171850163 1.029409734 0.277195365 0.088859849 283.2306199 320373.2112 0.021320907 0.056309765 1.82E-05 4.739340894 -0.14244043 MLAESDES(ph)GDEESVSQTDKTELQNTLR ddPTM_HeLa_A486_30min_R1 1 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 MLAESDES(1)GDEESVSQTDKTELQNTLR 233.36 7.40E-40 297200000 356350 346070 252990 134600 394020 347740 384400 424840 319900 437610 TRUE FALSE FALSE 331371.7052 318646.1528 350954.5033 313355.6023 344598.3375 304839.3744 288219.0542 328113.2062 347629.1896 328029.6076 1.010188402 0.971394488 1.069886666 0.955266217 1.050509861 0.929304451 0.878637317 1.000254851 1.05974943 1 18.32346651 MLDVALFMS(ph)NAMRLK ddPTM_HeLa_A485_30min_R1 1 MLDVALFMSNAMRLK 15 1 B4DNS9;F5H3L1 B4DNS9 NINJ2 1 0 MLDVALFMS(1)NAMRLK 51.927 0.037289 327070000 429820 188620 231260 1287200 695820 279830 758590 498350 349130 1640600 TRUE FALSE FALSE 525431.9761 210677.4682 316812.6975 1357516.477 626541.7176 294481.4661 596511.0494 376128.8811 419197.1886 1231628.613 0.426615597 0.171056003 0.257230706 1.10221252 0.50870994 0.239099241 0.484327047 0.305391477 0.34036006 1 20.23213586 -10.48082179 2.634350696 1.024490401 0.428618657 0.324166296 0.248566943 10834471.2 10910305.55 1929845.993 0.068510082 3.31E-11 10.48082179 -0.595871743 MLEEKS(ph)PEKVK ddPTM_HeLa_A485_30min_R1 1 MLEEKSPEKVK 11 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 MLEEKS(1)PEKVK 82.102 0.0025976 174930000 204150 130260 65549 489320 200680 205600 451630 392770 135450 636700 TRUE FALSE FALSE 249562.4632 145492.7739 89798.30282 516050.3126 180699.5946 216364.8981 355135.561 296442.5417 162633.5726 477982.4076 0.522116419 0.304389391 0.187869473 1.0796429 0.378046538 0.45266289 0.74298877 0.620195507 0.340250122 1 18.86659799 -14 0.188624115 2.971402369 0.433816001 0.255261606 0.243909573 198.9285553 1.941560948 148.2730827 0.686542578 1.00E-14 14 -2.537586368 MLEEKS(ph)PEKVK ddPTM_HeLa_A486_30min_R1 1 MLEEKSPEKVK 11 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 MLEEKS(1)PEKVK 104.17 0.00036186 125420000 162110 113620 33893 160640 94510 196990 299320 254510 76947 460370 TRUE FALSE FALSE 150746.9261 104616.3374 47017.27729 373978.0383 82655.67453 172687.3766 224426.9701 196563.6289 83616.82791 345090.3555 0.436833205 0.303156364 0.13624628 1.08371049 0.239518935 0.500412063 0.650342632 0.569600471 0.242304158 1 18.39661463 -11.24285756 2.281800343 2.89994006 0.46968709 0.280679073 0.257926913 24640755.38 3987271.471 241747718.1 0.066036284 5.72E-12 11.24285756 -2.43025297 MLFYSFFK ddPTM_HeLa_A485_30min_R1 2 MLFYSFFK 8 0 Q9Y333 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 0 0 ; ; 196.98 1.33E-09 41394000 57134 52204 53463 52150 71439 77100 96015 108479 38904 70351 FALSE FALSE TRUE 69843.26119 58308.80369 73241.18848 54998.82245 64326.28232 81136.83678 75500.61088 81874.35516 46711.67595 52813.79041 1.322443639 1.104045046 1.386781519 1.041372377 1.217982686 1.536281266 1.429562436 1.55024577 0.884459827 1 15.68862707 -7.779244319 24.99988399 0.94222954 1.316072331 0.473768187 0.160611873 262.9785693 369237.2852 0.163615045 0.042609537 1.66E-08 7.779244319 0.373842792 MLFYSFFK ddPTM_HeLa_A486_30min_R1 2 MLFYSFFK 8 0 Q9Y333 Q9Y333 LSM2 U6 snRNA-associated Sm-like protein LSm2 0 0 ; ; 180.7 3.03E-06 31121200 53103 70582 65689 26870 92825 83445 101166 87370 81060 91318 FALSE FALSE TRUE 49380.75392 64988.82526 91125.54001 62554.71793 81182.02294 73150.40431 75853.19678 67477.75827 88086.34607 68451.37842 0.721398971 0.949415874 1.331244777 0.91385622 1.185980835 1.068647644 1.108132495 0.985776471 1.286845468 1 16.06279197 -4.449119754 4.158210302 1.105923819 0.743237912 0.478240684 0.125195437 0.179919913 5.617415643 0.029215201 0.131131429 3.56E-05 4.449119754 -0.362685906 MLGEDS(ph)DEEEEMDTSER ddPTM_HeLa_A485_30min_R1 9 MLGEDSDEEEEMDTSER 17 0 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER ;;;;;;;; 396.18 6.05E-135 4966690000 1771909 2049305 1999256 2078264 2545040 2156346 2671602 2905008 2135689 2629332 TRUE FALSE FALSE 2166064.044 2288953.393 2738863.99 2191794.3 2291646.881 2269248.942 2100792.408 2192550.233 2564302.193 1973887.922 1.097359187 1.159616698 1.387547875 1.110394504 1.160981257 1.149634139 1.064291637 1.110777471 1.299112358 1 20.91260864 MLGEDS(ph)DEEEEMDTSER ddPTM_HeLa_A486_30min_R1 8 MLGEDSDEEEEMDTSER 17 0 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER ;;;;;;; 354.73 2.00E-105 5180650000 1858690 2190430 1646150 713009 2317390 2062000 2300680 2383090 1769190 2392430 TRUE FALSE FALSE 1728405.429 2016852.349 2283583.365 1659920.985 2026721.337 1807611.405 1725025.53 1840512.429 1922544.814 1793349.956 0.963785916 1.124628432 1.273361821 0.925597918 1.130131534 1.007952407 0.961901231 1.026298533 1.072041075 1 20.77422561 -5.28397688 24.9962488 1.020752169 1.120995758 0.226531411 0.086994817 1184.664145 1313903.878 0.024548618 0.036442465 5.20E-06 5.28397688 0.100243589 MLGEDS(ph)DEEEEMDTSERK ddPTM_HeLa_A485_30min_R1 2 MLGEDSDEEEEMDTSERK 18 1 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 MLGEDS(1)DEEEEMDTSERK;MLGEDS(1)DEEEEMDTSERK ; 283.22 1.20E-69 975590000 479500 492730 346760 654400 528420 503660 766620 631230 499760 898080 TRUE FALSE FALSE 586163.1207 550350.4873 475040.9539 690148.215 475808.6494 530030.8588 602825.3743 476419.8528 600057.2479 674205.1839 0.869413548 0.816295247 0.704594039 1.02364715 0.705732707 0.786156605 0.894127468 0.706639261 0.890021706 1 19.36282819 -8.006569945 24.38307036 1.000000012 0.81396975 0.274199533 0.094573254 222.7777463 826800.8545 0.086176518 0.022250681 9.85E-09 8.006569945 -0.186030262 MLGEDS(ph)DEEEEMDTSERK ddPTM_HeLa_A486_30min_R1 2 MLGEDSDEEEEMDTSERK 18 1 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 0 MLGEDS(1)DEEEEMDTSERK;MLGEDS(1)DEEEEMDTSERK ; 229.15 4.63E-35 941680000 698290 704810 303100 288810 599280 808250 885960 719010 502940 894020 TRUE FALSE FALSE 649343.477 648958.2887 420468.4373 672364.2756 524112.7143 708536.3327 664283.4373 555307.1189 546535.2441 670151.5729 0.968950165 0.968375387 0.627422891 1.003301794 0.782080854 1.057277728 0.99124357 0.828629136 0.815539747 1 19.35412791 -4.596906802 24.99927448 0.885827761 0.969043998 0.063139323 0.123730298 101.6133154 34311.231 0.031199746 0.082546787 2.53E-05 4.596906802 0.083216236 MLGYFSLVGLLR ddPTM_HeLa_A485_30min_R1 2 MLGYFSLVGLLR 12 0 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 ; ; 125.97 0.00050534 39963000 62366 71072 77217 67147 93438 48084 83345 65422 43409 96084 FALSE FALSE TRUE 76239.10154 79383.25216 105782.7816 70815.07058 84134.98464 50601.60389 65537.65988 49377.15192 52120.78813 72132.02709 1.056938292 1.100527122 1.466516135 0.981742416 1.16640261 0.701513682 0.908579206 0.684538532 0.722574843 1 16.13835235 -6.253534479 24.70117895 0.790296031 1.159175878 0.580882105 0.148830403 355.2976683 1110232.198 0.048913342 0.048048701 5.58E-07 6.253534479 0.368879847 MLGYFSLVGLLR ddPTM_HeLa_A486_30min_R1 4 MLGYFSLVGLLR 12 0 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 0 ;;; ;;; 134.25 0.0010323 31092900 40931.8 45946.8 45071.4 23890.25 51774.2 47043.5 58111.7 52647.7 45661 51464.6 FALSE FALSE TRUE 38062.69219 42305.80823 62524.25313 55617.70935 45280.19706 41239.75127 43571.53802 40660.968 49618.93224 38577.52918 0.986654485 1.096643801 1.620742812 1.441712586 1.173745391 1.069009658 1.129453828 1.054006539 1.286213329 1 15.23547312 -5.986431581 23.18053559 1.113459168 1.298131721 0.184718957 0.176292943 178.8320412 305514.9894 0.059022282 0.066875903 1.03E-06 5.986431581 0.184672553 MLIS(ph)AASPDIR ddPTM_HeLa_A486_30min_R1 1 MLISAASPDIR 11 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8;F8VXV5 F8VSE7 E2F7 Transcription factor E2F7 1 0 MLIS(0.798)AAS(0.202)PDIR 84.289 0.0044129 55190000 158270 126760 74691 36317 102580 99074 103430 104000 81030 120200 TRUE FALSE FALSE 147176.0903 116715.0759 103613.3555 84547.81136 89713.45988 86851.25719 77550.72003 80321.4703 88053.74564 90101.13763 1.633454296 1.295378494 1.149967228 0.938365636 0.995697305 0.96393075 0.860707446 0.891459003 0.977276735 1 16.4592577 -4.14430491 0.868324528 0.927734803 2.152942501 0.955902346 0.046859543 0.491537523 0.253523172 0.016762203 0.602718604 7.17E-05 4.14430491 1.225207699 MLIS(ph)AVSPEIR ddPTM_HeLa_A485_30min_R1 1 MLISAVSPEIR 11 0 E9PMT9;A0AVK6 E9PMT9 E2F8 Transcription factor E2F8 1 0 MLIS(0.718)AVS(0.282)PEIR 87.363 0.0031682 19758000 28713 40914 40410 37303 41823 35930 44253 46910 30874 35882 TRUE FALSE FALSE 35100.10779 45698.5364 55359.3406 39340.76843 37658.95527 37811.23924 34797.98504 35405.24895 37070.12861 26937.27776 1.303030993 1.696479385 2.055120087 1.460458209 1.398023795 1.403677075 1.291815207 1.314358833 1.37616462 1 14.71731644 -5.50479728 14.00401684 1.328181581 1.698007918 0.421196886 0.201403792 2.605845016 2016.277378 0.057596353 0.082286485 3.13E-06 5.50479728 0.369826337 MLIS(ph)AVSPEIR ddPTM_HeLa_A486_30min_R1 3 MLISAVSPEIR 11 0 E9PMT9;A0AVK6 E9PMT9 E2F8 Transcription factor E2F8 1 0 MLIS(0.859)AVS(0.141)PEIR;MLIS(0.526)AVS(0.474)PEIR;MLIS(0.5)AVS(0.5)PEIR ;; 89.403 0.0015704 58186000 129766 145552 121920 98615 158476 117688 141434 144104 109774 141618 TRUE FALSE FALSE 120670.0735 134017.9294 169130.6891 229580.7037 138598.4623 103168.8511 106045.7173 111294.665 119289.2987 106155.931 1.136724744 1.262462946 1.593228824 2.162674299 1.305612047 0.971861394 0.998961775 1.048407413 1.123717701 1 16.69582545 -6.001371832 24.99991914 1.04187148 1.549328147 0.472850782 0.254143932 51.3258363 935379.0506 0.086951628 0.097274174 9.97E-07 6.001371832 0.507456668 MLISAAS(ph)PDIR ddPTM_HeLa_A485_30min_R1 4 MLISAASPDIR 11 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8;F8VXV5 F8VSE7 E2F7 Transcription factor E2F7 1 0 MLIS(0.004)AAS(0.996)PDIR;MLIS(0.006)AAS(0.994)PDIR;MLIS(0.162)AAS(0.838)PDIR;MLIS(0.012)AAS(0.988)PDIR ;;; 125.82 6.00E-05 296417000 435105 595313 497327 511657 642348 444114 523271 438412 507653 688010 TRUE FALSE FALSE 531892.6062 664929.6768 681308.9528 539607.5263 578393.5777 467367.1223 411469.8761 330890.7696 609534.3006 516501.7689 1.029798228 1.287371538 1.319083484 1.044735098 1.119828842 0.904870323 0.796647564 0.640638212 1.180120451 1 18.97841376 -6.065324416 1.720431093 0.870702578 1.199728883 0.396658339 0.155968751 0.329650832 1.958521046 0.061005364 0.064213286 8.60E-07 6.065324416 0.329026305 MLISAAS(ph)PDIR ddPTM_HeLa_A486_30min_R1 1 MLISAASPDIR 11 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8;F8VXV5 F8VSE7 E2F7 Transcription factor E2F7 1 0 MLIS(0.015)AAS(0.985)PDIR 101.39 0.0012005 91289000 198490 150330 121060 61762 120690 108860 135820 143940 115460 144140 TRUE FALSE FALSE 184576.876 138417.3033 167937.6741 143785.0573 105551.9348 95429.96001 101836.3994 111168.0042 125468.1658 108046.4058 1.708311115 1.281091234 1.554310602 1.330771313 0.976912966 0.883231231 0.942524637 1.028891275 1.161243309 1 16.72129156 -5.635698342 3.41572624 0.990513387 1.487461421 0.794161141 0.119436016 0.105954193 2.417251634 0.036505729 0.048452597 2.31E-06 5.635698342 0.496948035 MLISAAS(ph)PDIRDR ddPTM_HeLa_A485_30min_R1 2 MLISAASPDIRDR 13 1 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8;F8VXV5 F8VSE7 E2F7 Transcription factor E2F7 1 0 MLIS(0.002)AAS(0.998)PDIRDR;MLISAAS(1)PDIRDR ; 98.421 0.00045492 190768000 119933 162285 155158 108624 244229 157524 194116 213117 136790 135266 TRUE FALSE FALSE 146611.6821 181262.8191 212557.4009 114557.8541 219912.7032 165771.7131 152641.5308 160849.7216 164242.4983 101546.6756 1.443786133 1.785019726 2.093199011 1.128130029 2.165631735 1.632468144 1.503166203 1.583997907 1.617408914 1 16.63178348 -9.543577693 0.407837821 0.818121195 1.721295749 0.334802545 0.28432025 10.04117393 1.552560817 2.745588184 0.18040183 2.86E-10 9.543577693 0.903174554 MLISAVS(ph)PEIR ddPTM_HeLa_A485_30min_R1 2 MLISAVSPEIR 11 0 E9PMT9;A0AVK6 E9PMT9 E2F8 Transcription factor E2F8 1 0 MLIS(0.02)AVS(0.98)PEIR;MLIS(0.23)AVS(0.77)PEIR ; 116.71 0.00030738 105047000 108252 168142 169310 122067 181304 156029 180584 201163 144656 150589 TRUE FALSE FALSE 132332.2839 187804.7443 231944.8146 128735.2111 163252.7372 164198.4372 142000.7532 151827.4588 173687.1323 113049.9337 1.170564897 1.661254794 2.05170235 1.138746454 1.444076364 1.452441694 1.256088779 1.343012365 1.536375358 1 16.78660062 -5.295908715 24.99984663 1.333660114 1.631182665 0.253513988 0.247533753 871.9638699 632414.2833 0.06920508 0.102653423 5.06E-06 5.295908715 0.29752255 MLISAVS(ph)PEIR ddPTM_HeLa_A486_30min_R1 1 MLISAVSPEIR 11 0 E9PMT9;A0AVK6 E9PMT9 E2F8 Transcription factor E2F8 1 0 MLIS(0.004)AVS(0.996)PEIR 115.57 0.00035078 57350000 125130 124560 110040 41225 137730 107350 124570 124070 106270 128980 TRUE FALSE FALSE 116359.0332 114689.412 152650.435 95973.8834 120454.6191 94106.24845 93401.26843 95821.96943 115481.5692 96682.56848 1.203516156 1.186247053 1.578882702 0.992669981 1.245877318 0.973352797 0.9660611 0.991098715 1.194440435 1 16.56096818 -5.301331874 24.99946219 1.052787092 1.30921881 0.459891987 0.134313261 468.2868202 293460.6802 0.037840137 0.056126895 5.00E-06 5.301331874 0.256431717 MLISILTER ddPTM_HeLa_A486_30min_R1 1 MLISILTER 9 0 D6RAZ8;D6RCA8;D6RFG5;P12429;D6RA82 D6RAZ8 ANXA3 Annexin;Annexin A3 0 0 133.86 0.0015322 53403000 25759 25810 23520 11262 32212 23335 28270 33593 21411 30587 FALSE FALSE TRUE 23953.42712 23764.7216 32627.57389 26218.50515 28171.6706 20456.16495 21196.54699 25944.60723 23266.92272 22927.81611 1.044732172 1.036501753 1.423056332 1.143523876 1.228711468 0.892198579 0.924490448 1.131577779 1.014790183 1 14.48481132 -6.250593223 24.9570371 0.996577448 1.179592157 0.379228543 0.116752096 830.5248388 1911041.464 0.040708257 0.040312548 5.62E-07 6.250593223 0.18301471 MLITILGTVKPNANR ddPTM_HeLa_A485_30min_R1 2 MLITILGTVKPNANR 15 1 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 0 ; ; 238.47 6.71E-31 198594000 129299 110212 105216 122121 137153 153772 196624 206948 77336 168741 FALSE FALSE TRUE 158061.1165 123100.3347 144139.7768 128792.161 123497.5657 161823.2641 154613.6761 156193.6785 92856.62583 126676.9741 1.247749384 0.97176567 1.137853014 1.016697485 0.97490145 1.277448133 1.220534964 1.233007652 0.733018976 1 16.95079479 -7.757643581 24.99996604 0.866509476 1.127969136 0.430195573 0.12338585 87.8629292 578715.5612 0.092453616 0.031936718 1.75E-08 7.757643581 0.26145966 MLITILGTVKPNANR ddPTM_HeLa_A486_30min_R1 3 MLITILGTVKPNANR 15 1 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 0 ;; ;; 222.29 1.01E-22 193018000 135415 186037 155943 89966 218235 183949 244677 203939 178298 270914 FALSE FALSE TRUE 125923.1078 171294.7506 216328.3059 209445.3946 190861.9313 161255.2426 183456.2267 157506.5417 193753.0142 203075.371 0.620080649 0.843503324 1.065261163 1.03136778 0.939857602 0.794065976 0.903389839 0.775606322 0.954094104 1 17.63165575 -4.328373554 3.620497453 0.924035905 0.604792083 0.527186507 0.088808252 0.206261637 4.625310634 0.024470841 0.155547898 4.69E-05 4.328373554 -0.319243822 MLLS(ph)PGGVSQPLTASLAR ddPTM_HeLa_A485_30min_R1 2 MLLSPGGVSQPLTASLAR 18 0 Q6PK04;I3L0U5 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 1 0 MLLS(0.997)PGGVSQPLT(0.001)AS(0.001)LAR;MLLS(1)PGGVSQPLTASLAR ; 124.43 1.30E-05 159696000 50822 65102 60361 62806 66661 56331 63523 92338 52968 72815 TRUE FALSE FALSE 62127.17857 72715.11259 82691.04573 66236.93275 60023.99678 59280.40406 49950.79211 69691.96072 63598.19175 54663.56056 1.136537356 1.330230081 1.512727032 1.211720058 1.098062332 1.084459253 0.913785923 1.27492538 1.163447662 1 15.73829181 -5.555912342 4.509205364 1.095939934 1.332656295 0.428892443 0.122793812 0.196126226 9.313550012 0.037928312 0.051198041 2.78E-06 5.555912342 0.236716361 MLLS(ph)PGGVSQPLTASLAR ddPTM_HeLa_A486_30min_R1 1 MLLSPGGVSQPLTASLAR 18 0 Q6PK04;I3L0U5 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 1 0 MLLS(1)PGGVSQPLTASLAR 97.502 0.00044705 45806000 27383 35490 20716 59685 34189 37482 39163 57929 19664 89213 TRUE FALSE FALSE 25463.59311 32677.64315 28737.78999 138949.6963 29900.69682 32857.85193 29364.00318 44739.83128 21368.49135 66873.48412 0.38077264 0.488648731 0.429733703 2.077799566 0.447123359 0.491343503 0.439097851 0.669021988 0.319536086 1 16.02914666 MLLS(ph)WDGGESR ddPTM_HeLa_A485_30min_R1 4 MLLSWDGGESR 11 0 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 0 MLLS(1)WDGGESR;MLLS(1)WDGGESR;MLLS(1)WDGGESR;MLLS(1)WDGGESR ;;; 138.24 1.32E-05 77584000 120856 166721 155108 116803 194064 142451 162395 176136 127753 153274 TRUE FALSE FALSE 147740.0003 186217.5707 212488.9038 123183.6521 174742.3068 149909.5141 127697.9816 132938.3698 153391.8553 115065.6126 1.283963096 1.618359877 1.846675988 1.070551395 1.518631873 1.302817677 1.10978405 1.15532666 1.333081638 1 16.81209722 -6.08016234 0.854803757 1.149527716 1.546284304 0.346822588 0.205001842 0.700574775 1.124890229 0.122513963 0.139380065 8.31E-07 6.08016234 0.396756588 MLLS(ph)WDGGESR ddPTM_HeLa_A486_30min_R1 1 MLLSWDGGESR 11 0 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 0 MLLS(1)WDGGESR 142.12 1.12E-06 20607000 54382 56324 50208 21232 65007 49310 49343 49092 43085 45448 TRUE FALSE FALSE 50570.10263 51860.68111 69649.88222 49429.16901 56853.21589 43226.63355 36996.8595 37914.82327 46819.64249 34067.52498 1.484407883 1.522290837 2.04446558 1.450917524 1.668839046 1.268851599 1.085986127 1.112931547 1.374318872 1 15.05610952 -6.355499007 3.427350958 1.153954088 1.643031906 0.633176951 0.17876061 0.16786975 3.737811319 0.066773334 0.058536449 4.41E-07 6.355499007 0.489077817 MLMRRDQVLK ddPTM_HeLa_A485_30min_R1 3 MLMRRDQVLK 10 2 F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 F8VYC4 RGPD1;RGPD2 RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 0 0 ;; ;; 58.978 0.010838 1217580000 2716180 2072570 1561610 1733340 2937670 1470470 1112630 1057900 815682 902400 FALSE FALSE TRUE 3320384.87 2314939.033 2139314.523 1828027.975 2645185.26 1547461.535 874907.5111 798448.3663 979381.8955 677448.2874 4.901311188 3.417145006 3.15790085 2.698402238 3.904630522 2.28425042 1.291474977 1.178611535 1.445692481 1 19.3697513 -6.15317866 0.480278259 0.792299063 4.372079238 0.801315227 0.557791358 0.540686503 0.26082876 0.54686555 0.833706621 7.03E-07 6.15317866 3.579780175 up MLMRRDQVLK ddPTM_HeLa_A486_30min_R1 2 MLMRRDQVLK 10 2 F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 F8VYC4 RGPD1;RGPD2 RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 0 0 ; ; 58.978 0.010838 261090000 1787290 1220010 717530 542180 1261690 819410 954030 778160 453340 582720 FALSE FALSE TRUE 1662010.201 1123331.964 995376.8321 1262222.44 1103437.075 718319.5254 715321.6033 600989.9551 492635.8762 436803.1191 3.804941237 2.571712323 2.278776841 2.889682754 2.526165742 1.644492665 1.637629339 1.375882929 1.127821333 1 18.73662363 -5.504867128 0.314815588 0.805590985 4.096340725 0.839905912 0.336318365 1.406708996 0.204729478 0.433529143 1.684633646 3.13E-06 5.504867128 3.29074974 up MLPDK(ac)DCR ddPTM_HeLa_A485_30min_R1 2 MLPDKDCR 8 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 1 ; MLPDK(1)DCR;MLPDK(1)DCR 157.68 0.00062817 109866000 57121 75888 163797 72300 101837 78960 130568 118280 75453 163636 FALSE TRUE FALSE 69827.36938 84762.44146 224392.3265 76249.56593 91697.75071 83094.2235 102671.0802 89271.64454 90595.725 122844.5567 0.568420541 0.689997536 1.8266363 0.62069959 0.746453511 0.676417627 0.83578046 0.726704112 0.737482616 1 16.90647441 MLPDK(ac)DCR ddPTM_HeLa_A486_30min_R1 2 MLPDKDCR 8 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 1 ; MLPDK(1)DCR;MLPDK(1)DCR 144.12 0.0016307 80947000 75426 110828 189795 36462 117950 95114 145006 141375 99366 183545 FALSE TRUE FALSE 70139.0269 102045.5857 263288.7069 84885.37869 103155.6112 83379.80173 108723.9651 109186.9987 107979.1249 137584.1373 0.509790069 0.741695864 1.913655978 0.616970679 0.74976384 0.606027725 0.790236194 0.793601652 0.784822487 1 17.06995462 MLPDKDCR ddPTM_HeLa_A485_30min_R1 7 MLPDKDCR 8 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ;;;;;; ;;;;;; 92.062 0.0027382 4273241000 7065680 7984010 7303290 7834450 9953540 8673470 10697250 11454380 7681250 10521430 FALSE FALSE TRUE 8637416.14 8917670.518 10005080.89 8262426.166 8962530.609 9127599.477 8411695.149 8645175.345 9222806.418 7898631.134 1.093533296 1.129014682 1.266685419 1.046057985 1.134694159 1.155592573 1.064956067 1.094515644 1.167646173 1 22.91317122 -14 0.2203307 0.354360607 1.143847596 0.291127924 0.059160798 197.9801129 1.981442072 56.77479474 0.11335389 1.00E-14 14 0.789486989 MLPDKDCR ddPTM_HeLa_A486_30min_R1 5 MLPDKDCR 8 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ;;;; ;;;; 81.594 0.010214 3212360000 6358636 7187980 5132620 2837197 9565520 7471870 8268100 8631580 6204114 8332190 FALSE FALSE TRUE 5912928.452 6618378.287 7120107.92 6605138 8365723.287 6550066.648 6199333.929 6666357.66 6741891.597 6245755.391 0.9467115 1.059660181 1.139991478 1.057540295 1.33942538 1.048722891 0.992567518 1.067342098 1.079435741 1 22.57444464 -9.65912159 10.45699871 0.999988391 1.085277679 0.05560059 0.099246208 0 0 0.099161537 0.024050205 2.19E-10 9.65912159 0.085289288 MLPHAPGVQMQAIPEDAIPEES(ph)GDEDEDDPDKR ddPTM_HeLa_A485_30min_R1 32 MLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKR 33 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 253.02 5.94E-64 74030156000 7454585 7157263 5372793 12072325 9280237 8572842 12874560 12971608 6807633 15793460 TRUE FALSE FALSE 9112831.715 7994242.648 7360412.711 12731805.55 8356264.019 9021702.751 10123805.08 9790300.799 8173862.5 11856441.08 0.768597563 0.674253142 0.620794441 1.073830289 0.704786872 0.760911532 0.853865423 0.825736891 0.689402701 1 23.49916769 -14 0.229692983 2.157408025 0.753351635 0.229656786 0.121047606 253.1740811 2.534783813 136.7889244 0.21357219 1.00E-14 14 -1.404056389 MLPHAPGVQMQAIPEDAIPEES(ph)GDEDEDDPDKR ddPTM_HeLa_A486_30min_R1 28 MLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKR 33 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR ;;;;;;;;;;;;;;;;;;;;;;;;;;; 257.08 8.58E-64 65212360000 8067789 7464092 4383249 5142651 7615255 8918944 11611284 10947830 6066830 14891157 TRUE FALSE FALSE 7502278.653 6872610.166 6080560.4 11972351.42 6660078.708 7818615.37 8706017.932 8455248.098 6592707.709 11162314.36 0.672107809 0.6156976 0.544740114 1.072568917 0.596657511 0.700447516 0.779947388 0.757481632 0.590621935 1 23.41213285 -11.39316629 2.279335441 3.302396991 0.707598587 0.280029338 0.142547145 10653065.23 1154113.308 126478932.6 0.034980822 4.04E-12 11.39316629 -2.594798404 MLPHAPGVQMQAIPEDAVHEDS(ph)GDEDGEDPDKR ddPTM_HeLa_A485_30min_R1 27 MLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKR 33 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 1 0 MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR ;;;;;;;;;;;;;;;;;;;;;;;;;; 380.37 9.83E-171 90408910000 13862789 13190880 11683790 20861776 17464975 17000768 24250971 24433522 13285149 27569152 TRUE FALSE FALSE 16946518.59 14733438.67 16006110.12 22001402 15726100.77 17890901.92 19069552.93 18441162.42 15951356.55 20696669.78 0.818804125 0.711874849 0.773366454 1.063040684 0.759837256 0.864433849 0.921382674 0.891020759 0.770720928 1 24.30289531 -1.000000031 0.032260877 1.429843886 1.18E-07 0.203037423 0.095591511 2016.338606 4.99189194 68.18819126 176.5387084 0.099999993 1.000000031 -1.429843769 MLPHAPGVQMQAIPEDAVHEDS(ph)GDEDGEDPDKR ddPTM_HeLa_A486_30min_R1 34 MLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKR 33 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 1 0 MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 352.32 2.98E-148 1.04E+11 10863029 9918375 6192307.7 6211179.9 10302729 11680891 15649288 13970384 7971087 18070858 TRUE FALSE FALSE 10101586.76 9132406.843 8590135.077 14459940.7 9010464.66 10239821.43 11733670.62 10789632.53 8662027.239 13545797.54 0.745735844 0.674187461 0.634154988 1.067485371 0.665185246 0.75594083 0.866222206 0.796529884 0.639462329 1 23.691342 -11.40805115 2.249000194 2.948452578 0.764541722 0.250167021 0.124195742 7234394.083 543097.9146 72264903.12 0.031060955 3.91E-12 11.40805115 -2.183910856 MLQDDDDTVHLPFEGGS(ph)LLQIPVK ddPTM_HeLa_A486_30min_R1 1 MLQDDDDTVHLPFEGGSLLQIPVK 24 0 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-4;Q9Y6M7-3;E9PFN4;A0A0A0MST8;Q9Y6M7-12;H7C3C4;Q9Y6M7-5 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 MLQDDDDT(0.001)VHLPFEGGS(0.999)LLQIPVK 58.974 0.017958 37892000 15199 15787 13407 9123.1 20025 19526 17479 17105 19093 24816 TRUE FALSE FALSE 14133.62859 14535.98062 18598.54945 21239.03786 17513.27777 17117.08065 13105.56933 13210.5649 20747.99661 18601.91207 0.759794398 0.781424004 0.999819232 1.141766382 0.94147729 0.920178559 0.704528076 0.710172419 1.115369029 1 14.1831633 -6.552137018 24.99102342 0.851791979 0.932875598 0.000280361 0.153057741 729.0367471 622702.4182 0.061660253 0.047762358 2.80E-07 6.552137018 0.081083618 MLQHIDYR ddPTM_HeLa_A485_30min_R1 2 MLQHIDYR 8 0 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3;J3KRY3;S4R3P3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 ; ; 109.21 0.0043899 702200000 436453 601500 615050 444627 690670 670410 749400 832810 497770 602740 FALSE FALSE TRUE 533540.4641 671840.1926 842582.5894 468915.8472 621904.4697 705511.6309 589284.568 628562.0417 597667.8732 452488.0106 1.17912619 1.484769048 1.862110309 1.036305573 1.374410935 1.559183038 1.302320844 1.389124191 1.320847976 1 18.78752004 -9.466271443 0.433283408 0.907722752 1.426255444 0.244535244 0.209238777 11.91833908 2.128912781 1.832529262 0.127041856 3.42E-10 9.466271443 0.518532693 MLQHIDYR ddPTM_HeLa_A486_30min_R1 1 MLQHIDYR 8 0 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3;J3KRY3;S4R3P3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 117.04 0.0031597 155050000 73959 94385 82641 28565 108230 88510 94498 93632 87951 96991 FALSE FALSE TRUE 68774.85602 86905.58886 114641.8084 66500.7636 94654.7842 77590.5361 70853.6009 72314.03757 95574.66349 72703.82229 0.945959289 1.195337275 1.576833305 0.914680432 1.301923079 1.067213988 0.97455125 0.994638731 1.314575499 1 16.14974359 -6.367965938 10.6625103 1.063522358 1.193902929 0.081785561 0.194287158 1.279162017 120.7316705 0.068265206 0.060179633 4.29E-07 6.367965938 0.13038057 MLQYCLQGLFHPAR ddPTM_HeLa_A485_30min_R1 1 MLQYCLQGLFHPAR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 0 68.83 0.02401 19146000 27585 40391 29561 20927 47571 33005 59071 70275 28507 36316 FALSE FALSE TRUE 33721.18808 45114.3761 40496.84404 22070.18902 42834.66421 34733.09076 46449.99828 53039.94606 34228.09342 27263.08955 1.236880656 1.654778561 1.4854092 0.809526337 1.571159576 1.273996871 1.703768687 1.945485524 1.255473755 1 14.73466144 -6.748061411 24.98663521 1.554972479 1.346187595 0.019038793 0.322912223 605.4675682 1130859.881 0.122352329 0.094207192 1.79E-07 6.748061411 -0.208784884 MLRPVS(ph)R ddPTM_HeLa_A485_30min_R1 2 MLRPVSR 7 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 MLRPVS(1)R;MLRPVS(1)R ; 61.602 0.0085196 211810000 111813 148018 147791 98611 172599 143128 181878 225380 171256 159089 TRUE FALSE FALSE 136685.4161 165327.4175 202465.041 103997.8692 155414.4375 150621.9608 143018.2795 170105.2016 205625.5083 119431.0401 1.144471454 1.384291867 1.695246402 0.870777556 1.301290162 1.261162597 1.197496726 1.424296409 1.721709098 1 16.86581832 -7.285733458 20.05224222 1.429752824 1.272191567 0.032321332 0.254065136 196.1332103 161878.2268 0.135571369 0.065265497 5.18E-08 7.285733458 -0.157561257 MLRPVS(ph)R ddPTM_HeLa_A486_30min_R1 2 MLRPVSR 7 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 MLRPVS(1)R;MLRPVS(1)R ; 63.961 0.014449 459280000 132566 143666 128820 52635 142654 137323 166487 173311 122139 142190 TRUE FALSE FALSE 123273.808 132281.3829 178702.5539 122536.94 124761.0051 120381.4845 124830.1917 133851.8687 132726.1069 106584.6985 1.156580726 1.241091684 1.676624848 1.149667276 1.170533922 1.12944434 1.171183044 1.25582631 1.245264177 1 16.70164081 MLS(ph)FQGLAELAHR ddPTM_HeLa_A485_30min_R1 2 MLSFQGLAELAHR 13 0 C9JZL3;O15294 C9JZL3 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit 1 0 MLS(1)FQGLAELAHR;MLS(1)FQGLAELAHR ; 159.88 2.29E-10 80776000 44913 68766 67746 56327 78025 65531 73557 80197 52551 67029 TRUE FALSE FALSE 54903.7419 76807.58552 92808.06455 59404.00138 70256.55704 68962.10183 57840.94604 60528.56001 63097.50367 50319.90388 1.091093934 1.526385776 1.844360927 1.180526925 1.396198157 1.37047364 1.149464558 1.202875112 1.253927349 1 15.61884155 -7.092389265 0.533922944 1.043760781 1.462735427 0.284420701 0.197284054 1.120509746 0.692557718 0.199723644 0.137547858 8.08E-08 7.092389265 0.418974646 MLS(ph)FQGLAELAHR ddPTM_HeLa_A486_30min_R1 2 MLSFQGLAELAHR 13 0 C9JZL3;O15294 C9JZL3 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit 1 0 MLS(1)FQGLAELAHR;MLS(1)FQGLAELAHR ; 175.39 1.21E-12 61866000 54910 57393 52922 32476 84265 71735 76741 79366 57983 80678 TRUE FALSE FALSE 51061.09256 52844.96966 73414.8157 75605.76925 73695.69796 62885.06505 57539.59012 61296.09435 63009.01313 60475.70367 0.844324075 0.873821493 1.213955543 1.2501842 1.21860009 1.039840154 0.9514497 1.013565624 1.041889706 1 15.88406803 -9.881674896 13.59908991 0.999996561 1.056009075 0.010278431 0.134270123 0 0 0.145709931 0.035339849 1.31E-10 9.881674896 0.056012515 MLS(ph)QDAPTVK ddPTM_HeLa_A485_30min_R1 1 MLSQDAPTVK 10 0 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 MLS(1)QDAPTVK 89.013 0.0034081 139270000 359490 336240 206920 509450 491820 406220 732910 803890 350770 693230 TRUE FALSE FALSE 439457.3103 375560.3431 283468.3187 537279.9635 442852.6739 427489.0511 576317.7912 606734.717 421166.3215 520420.519 0.844427332 0.721647839 0.544690896 1.032395811 0.850951601 0.821430046 1.107407895 1.165854717 0.809280776 1 18.98931832 -5.827957804 0.978212329 1.013617566 0.7210462 0.348201788 0.144000646 0.603005361 1.245993774 0.071058422 0.103103135 1.49E-06 5.827957804 -0.292571366 MLS(ph)SSDAITQEFMDLR ddPTM_HeLa_A486_30min_R1 1 MLSSSDAITQEFMDLR 16 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;E9PNZ4;A0A669KBB0;A0A5F9ZGX0;E9PLY5 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 MLS(0.942)S(0.029)S(0.029)DAITQEFMDLR 68.944 0.0093793 10855000 7368.1 9479.6 7372.7 3226.3 8625.5 9323.4 8459.8 9418.5 7231.6 6785.1 TRUE FALSE FALSE 6851.634239 8728.401972 10227.60689 7510.989448 7543.60936 8173.173701 6343.068561 7274.113154 7858.440911 5086.066796 1.347138076 1.716139862 2.010906914 1.476777586 1.48319117 1.606973331 1.247146138 1.430204015 1.545091959 1 12.31233469 -9.580258832 0.200465238 0.633683247 1.739470684 0.447673517 0.191268119 13.56106343 0.740717573 3.636271809 0.641630203 2.63E-10 9.580258832 1.105787437 MLSST(ph)PPTPIACAPSAVNQAAPHQQNR ddPTM_HeLa_A485_30min_R1 1 MLSSTPPTPIACAPSAVNQAAPHQQNR 27 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MLS(0.001)S(0.005)T(0.559)PPT(0.435)PIACAPSAVNQAAPHQQNR 167.48 1.01E-13 432680000 135020 167280 140560 98881 161840 142180 161430 144620 115750 133890 TRUE FALSE FALSE 165054.7332 186841.9409 192558.9932 104282.6187 145726.6413 149624.3249 126939.1617 109151.7182 138979.9633 100513.6871 1.642112015 1.858870631 1.915748977 1.0374967 1.449818881 1.488596522 1.262904242 1.085938855 1.382696898 1 16.61703244 -4.514517112 0.27386657 1.045364464 2.381755089 0.523166397 0.213183524 6.271992255 0.439028535 0.289760044 2.80679564 3.06E-05 4.514517112 1.336390624 MLSST(ph)PPTPIACAPSAVNQAAPHQQNR ddPTM_HeLa_A486_30min_R1 2 MLSSTPPTPIACAPSAVNQAAPHQQNR 27 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MLS(0.017)S(0.108)T(0.866)PPT(0.009)PIACAPSAVNQAAPHQQNR;MLS(0.026)S(0.145)T(0.827)PPT(0.001)PIACAPSAVNQAAPHQQNR ; 179.89 5.61E-20 620780000 165970 174050 167700 40235 184270 154760 160010 158460 130430 160480 TRUE FALSE FALSE 154336.3601 160257.6441 232637.9312 93669.11336 161157.1384 135667.2847 119973.8056 122382.1172 141735.7774 120294.7635 1.282984859 1.332207982 1.93389907 0.778663266 1.3396854 1.127790444 0.997331905 1.017351991 1.178237301 1 16.87621432 -5.273355913 24.999823 1.074972541 1.497948402 0.488674585 0.212138375 642.4780363 1347860.075 0.058820492 0.088028026 5.33E-06 5.273355913 0.422975861 MLSYLINGFIK ddPTM_HeLa_A486_30min_R1 1 MLSYLINGFIK 11 0 H3BV68;C9J7I2;F5H7K1;E7EWW0;Q7Z3J2-2;Q7Z3J2 H3BV68 C16orf62 UPF0505 protein C16orf62 0 0 170.99 5.44E-06 1616200 4709.8 4629.6 4208.2 1582.5 3993.6 4407.3 4846.1 4501 4298.3 5981.3 FALSE FALSE TRUE 4379.667341 4262.733635 5837.72774 3684.139975 3492.685449 3863.572136 3633.554523 3476.220556 4670.880105 4483.543548 0.976831672 0.950751027 1.302034357 0.82170273 0.779001121 0.861722897 0.810420259 0.775328826 1.041783146 1 12.1304237 MLTTVGPASS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 MLTTVGPASSSPK 13 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 MLTTVGPAS(0.012)S(0.536)S(0.453)PK 91.441 0.00065873 0 123110 145110 105780 220930 283070 155110 250190 301800 138180 288630 TRUE FALSE FALSE 150495.3948 162079.3522 144912.4239 232998.8465 254886.5569 163231.3198 196734.8626 227783.0768 165911.4585 216679.8528 0.69455186 0.748013025 0.66878587 1.075313849 1.176327903 0.753329475 0.907951801 1.05124253 0.765698593 1 17.72520549 -5.250841585 24.75543864 0.961601841 0.708206508 0.47095192 0.12510251 585.4065161 1367450.771 0.034985855 0.059799747 5.61E-06 5.250841585 -0.253395333 MLTTVGPASS(ph)SPK ddPTM_HeLa_A486_30min_R1 2 MLTTVGPASSSPK 13 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 MLTTVGPAS(0.052)S(0.599)S(0.349)PK;MLTTVGPAS(0.135)S(0.432)S(0.432)PK ; 83.087 0.0023878 125490000 385950 352310 258993 286530 490740 391520 546160 525850 286750 679130 TRUE FALSE FALSE 358896.898 324391.6725 359282.0257 667056.3204 429186.8132 343218.2431 409504.9913 406125.4342 311605.7209 509071.4276 0.705003028 0.637222313 0.705759558 1.310339344 0.843077788 0.674204492 0.804415587 0.797776917 0.61210609 1 18.95750857 -11.45421296 2.326100062 3.331245134 0.795367984 0.100789882 0.188952497 10124518.63 1468859.563 124285340.1 0.05025928 3.51E-12 11.45421296 -2.53587715 MLTTVGPASSS(ph)PK ddPTM_HeLa_A485_30min_R1 3 MLTTVGPASSSPK 13 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 MLTTVGPAS(0.007)S(0.19)S(0.802)PK;MLTTVGPAS(0.001)S(0.163)S(0.836)PK;MLTTVGPASS(0.002)S(0.998)PK ;; 293.41 1.50E-57 594330000 662070 647420 449940 989550 987520 715990 1107400 1134620 642290 1348900 TRUE FALSE FALSE 809345.1874 723130.1372 616391.5296 1043606.611 889199.0414 753478.1293 870794.9434 856352.666 771191.7116 1012644.055 0.799239559 0.714101005 0.608695155 1.030575952 0.878096343 0.744070067 0.859922042 0.845660094 0.761562474 1 19.94969572 -14 0.094015572 1.551045821 0.672521049 0.232977738 0.106426406 328.4408636 2.124185602 36.99971003 2.309740876 1.00E-14 14 -0.878524773 MLVELSK ddPTM_HeLa_A486_30min_R1 1 MLVELSK 7 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 103.92 0.026991 15752000 18313 17533 13571 7755.6 18015 17336 18347 19111 16136 20862 FALSE FALSE TRUE 17029.35327 16143.62123 18826.05464 18055.42875 15755.39072 15197.26058 13756.38655 14759.84249 17534.68147 15638.01941 1.088971232 1.032331576 1.203864386 1.15458539 1.00750551 0.97181492 0.879675756 0.943843469 1.121285312 1 13.93277018 -5.880122721 4.887822246 0.975041895 1.119144113 0.461494462 0.070117836 0.195442105 7.53550128 0.023301451 0.026694642 1.32E-06 5.880122721 0.144102219 MLVLVLGDLHIPHR ddPTM_HeLa_A485_30min_R1 2 MLVLVLGDLHIPHR 14 0 Q9UBQ0 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 0 ; ; 78.763 0.0098748 25022000 15254.4 18661.3 16514.3 11388.4 15163.7 13751.2 20015 23358 10743.5 18210.3 FALSE FALSE TRUE 18647.68865 20843.5767 22623.62679 12010.51946 13653.94879 14471.19157 15738.63174 17629.41388 12899.6219 13670.80735 1.364051748 1.524677817 1.654885934 0.878552316 0.99876682 1.058546961 1.151258396 1.289566405 0.943588888 1 13.73881083 -5.258151572 24.99915706 1.060790745 1.515552443 0.744940848 0.125485846 152.7802601 1161673.415 0.036300164 0.059682899 5.52E-06 5.258151572 0.454761698 MLVLVLGDLHIPHR ddPTM_HeLa_A486_30min_R1 4 MLVLVLGDLHIPHR 14 0 Q9UBQ0 Q9UBQ0 VPS29 Vacuolar protein sorting-associated protein 29 0 0 ;;; ;;; 89.013 0.0041168 35862600 22102 21980.1 18904.4 13469.2 25047.1 19787.3 24556.4 23713.2 15506.1 25755.6 FALSE FALSE TRUE 20552.76393 20238.31683 26224.68996 31356.9783 21905.45916 17346.14411 18412.12899 18314.22202 16850.18123 19306.23012 1.064566402 1.048279063 1.358353744 1.624189606 1.13463162 0.898473912 0.953688466 0.948617203 0.872784647 1 14.23677886 -6.059636862 5.294376934 0.937688881 1.276784775 0.520522445 0.153635829 0.192217893 11.16799362 0.056537317 0.057614845 8.72E-07 6.059636862 0.339095893 MLVVLLQGTR ddPTM_HeLa_A486_30min_R1 2 MLVVLLQGTR 10 0 P08133-2;P08133;E5RK63 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 124.98 0.0046229 36853000 23969 32475 27342 9172.5 31248 26795 27053 29272 25915 30025 FALSE FALSE TRUE 22288.89688 29901.56273 37929.55464 21354.04355 27328.58446 23489.30533 20284.05326 22607.4046 28161.33307 22506.54457 0.990329582 1.328571902 1.685267791 0.948792627 1.214250565 1.043665555 0.901251332 1.004481365 1.251250852 1 14.45805696 -5.309045419 24.99996402 1.052280213 1.334109401 0.326751271 0.186000803 458.1963234 240617.5136 0.053149752 0.078834008 4.91E-06 5.309045419 0.281829188 MLWGSDPYPHAEPQQAT(ph)TPK ddPTM_HeLa_A485_30min_R1 1 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 MLWGSDPYPHAEPQQAT(0.592)T(0.408)PK 124.81 8.79E-07 334250000 162940 174490 120600 199640 201960 163430 236960 230430 144070 276420 TRUE FALSE FALSE 199185.4409 194895.0876 165214.9586 210545.8277 181852.1533 171986.9421 186331.5602 173916.6812 172983.5275 207513.5811 0.959867011 0.939191963 0.796164558 1.01461228 0.876338562 0.828798487 0.897924652 0.838097826 0.833600994 1 17.66284623 -5.968866931 24.99461894 0.868690198 0.922238427 0.092692014 0.06927214 429.5888567 344885.9489 0.020682707 0.023451776 1.07E-06 5.968866931 0.053548229 MLWGSDPYPHAEPQQAT(ph)TPK ddPTM_HeLa_A486_30min_R1 1 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 MLWGSDPYPHAEPQQAT(0.91)T(0.09)PK 143.67 2.97E-09 325150000 277990 203050 111460 83179 202770 208270 296730 271840 167470 304120 TRUE FALSE FALSE 258504.3365 186959.5785 154620.297 193644.9156 177336.6958 182575.7649 222485.0155 209947.9662 181986.4344 227966.3725 1.133958196 0.82011911 0.678259233 0.849445089 0.777907258 0.800889021 0.975955414 0.920960245 0.798303857 1 17.7984615 -6.749779031 24.94662036 0.917218241 0.832157472 0.092113029 0.119829235 532.4034618 1139046.158 0.046893154 0.036018686 1.78E-07 6.749779031 -0.085060769 MLWGSDPYPHAEPQQATT(ph)PK ddPTM_HeLa_A485_30min_R1 3 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 MLWGSDPYPHAEPQQAT(0.087)T(0.913)PK;MLWGSDPYPHAEPQQAT(0.153)T(0.847)PK;MLWGSDPYPHAEPQQAT(0.118)T(0.882)PK ;; 136.4 2.68E-07 780700000 553880 499140 408400 704690 652640 570050 773680 721100 420010 924290 TRUE FALSE FALSE 677088.6951 557510.0811 559484.1549 743185.4303 587660.87 599896.9365 608376.9476 544249.0944 504302.1544 693881.5133 0.975798724 0.803465823 0.806310795 1.071055239 0.846918182 0.864552413 0.876773535 0.78435451 0.726784249 1 19.4043298 -6.832059323 1.90440278 0.820768006 0.896047171 0.05067672 0.099905961 0.888210632 6.555837155 0.053785525 0.032003518 1.47E-07 6.832059323 0.075279166 MLWGSDPYPHAEPQQATT(ph)PK ddPTM_HeLa_A486_30min_R1 3 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 MLWGSDPYPHAEPQQAT(0.004)T(0.996)PK;MLWGSDPYPHAEPQQAT(0.157)T(0.843)PK;MLWGSDPYPHAEPQQAT(0.177)T(0.823)PK ;; 154.13 1.06E-09 634510000 473860 403056 225744 176146 395320 407841 514630 506700 312475 611090 TRUE FALSE FALSE 440644.861 371116.3747 313158.1224 410076.7899 345735.2794 357525.724 385864.1308 391335.4712 339560.5846 458069.0865 0.961961577 0.810175551 0.683648235 0.89522913 0.754766671 0.780506117 0.842371036 0.854315392 0.741286838 1 18.80520568 -10.87398199 4.482518755 1.051314949 0.81158217 0.349894561 0.076084879 0.037722003 0.001060486 0.071221782 0.017364411 1.34E-11 10.87398199 -0.23973278 MMFIMWFS(ph)GLR ddPTM_HeLa_A485_30min_R1 1 MMFIMWFSGLR 11 0 Q9Y2E8;Q9Y2E8-2 Q9Y2E8 SLC9A8 Sodium/hydrogen exchanger 8 1 0 MMFIMWFS(1)GLR 64.297 0.011839 32395000 2482.9 2091.7 2272 3812.8 4075.8 1976.8 1999.4 2209 2345.9 3832.3 TRUE FALSE FALSE 3035.212539 2336.30612 3112.507346 4021.083609 3669.999041 2080.302191 1572.211856 1667.239286 2816.700612 2876.978138 1.05500021 0.812069473 1.081866874 1.397676109 1.275643701 0.723085853 0.546480293 0.579510586 0.97904832 1 11.49033854 -6.276332085 23.91435068 0.725647813 1.119910079 0.442856214 0.198690203 432.6466865 694730.9799 0.075308998 0.066721131 5.29E-07 6.276332085 0.394262266 MMFIMWFS(ph)GLR ddPTM_HeLa_A486_30min_R1 2 MMFIMWFSGLR 11 0 Q9Y2E8;Q9Y2E8-2 Q9Y2E8 SLC9A8 Sodium/hydrogen exchanger 8 1 0 MMFIMWFS(1)GLR;MMFIMWFS(1)GLR ; 61.65 0.014742 63324000 3128 5130.2 3756.4 1132.7 6321.4 5550.6 4332 5556 3655.9 6003 TRUE FALSE FALSE 2908.743353 4723.664268 5210.97868 2636.982843 5528.511067 4865.823406 3248.087781 4291.020087 3972.796356 4499.809727 0.646414744 1.049747557 1.158044228 0.586020966 1.228609964 1.081339812 0.721827806 0.95360034 0.882880965 1 12.13564828 -4.25081305 24.11389452 0.959864312 0.64641445 0.209806779 0.183937921 1540.113083 3494804.284 0.045127884 0.615165412 5.61E-05 4.25081305 -0.313449862 MMGGREQR ddPTM_HeLa_A486_30min_R1 1 MMGGREQR 8 1 D6W5U7;Q9UJ98-2;Q9UJ98-3;Q9UJ98 D6W5U7 STAG3 Cohesin subunit SA-3 0 0 50.966 0.034255 30366000 50162 102230 95578 45989 159720 114980 137300 146110 104030 92840 FALSE FALSE TRUE 46645.90284 94128.92248 132588.3613 107064.7162 139686.4283 100794.9366 102946.0878 112843.9426 113047.4042 69592.25971 0.670274295 1.352577469 1.905217072 1.538457245 2.007212136 1.448364187 1.479274968 1.621501343 1.624424967 1 16.08663923 -4.3284361 3.289889556 1.607192466 0.604489689 0.520862068 0.259368557 0.195180974 3.462538106 0.062063098 0.44566751 4.69E-05 4.3284361 -1.002702777 MMQTILHFPQNRR ddPTM_HeLa_A485_30min_R1 1 MMQTILHFPQNRR 13 1 O60287 O60287 URB1 Nucleolar pre-ribosomal-associated protein 1 0 0 61.56 0.037287 14068000 14267 15866 21617 20944 30263 16092 23289 20418 17258 29661 FALSE FALSE TRUE 17440.64493 17721.39068 29614.02786 22088.11769 27249.90946 16934.55224 18313.1149 15410.45349 20721.5223 22267.05857 0.783248711 0.795856832 1.329947903 0.991963874 1.22377679 0.760520398 0.822430805 0.692074054 0.93059091 1 14.44262337 -6.289136432 24.82721237 0.820709571 1.027341763 0.21049708 0.175774654 1024.194351 918068.4642 0.063567077 0.056073158 5.14E-07 6.289136432 0.206632192 MMS(ph)PNKLHTNFHIPK ddPTM_HeLa_A485_30min_R1 1 MMSPNKLHTNFHIPK 15 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 MMS(0.967)PNKLHT(0.033)NFHIPK 53.453 0.027151 154510000 67682 56404 43721 72810 81691 77684 104220 132720 66151 137990 TRUE FALSE FALSE 82737.6274 62999.95715 59895.21728 76787.42594 73557.55721 81751.41412 81952.5456 100170.2119 79426.89893 103591.6325 0.798690255 0.608156814 0.578185861 0.741251239 0.710072382 0.789170053 0.791111633 0.966972037 0.766730835 1 16.66054795 -6.932327999 0.549931817 0.965161139 0.65105467 0.59157813 0.080962816 0.570987219 0.362755083 0.075954487 0.055330631 1.17E-07 6.932327999 -0.314106469 MNASPLFLHFVILHGTPNFDTGGVCRPFLK ddPTM_HeLa_A485_30min_R1 2 MNASPLFLHFVILHGTPNFDTGGVCRPFLK 30 1 Q68CZ2;E9PCX8;Q68CZ2-2;C9JHU5;Q68CZ2-3;Q68CZ2-4 Q68CZ2 TNS3 Tensin-3 0 0 ; ; 198.79 3.19E-41 35547000 14010.3 13696.5 12264.8 12162.4 14711.6 13047.3 20137.8 19208.4 7892.6 21569 FALSE FALSE TRUE 17126.8429 15298.18653 16802.0599 12826.80112 13246.86145 13730.43645 15835.19452 14497.50978 9476.572425 16192.24525 1.057718842 0.944784759 1.037660908 0.792157043 0.818099111 0.847963716 0.977949276 0.895336598 0.585253761 1 13.98301543 -5.25655549 24.55980232 0.845401133 1.006527838 0.325675744 0.110737948 403.3986935 2028576.071 0.030115314 0.050057884 5.54E-06 5.25655549 0.161126705 MNASPLFLHFVILHGTPNFDTGGVCRPFLK ddPTM_HeLa_A486_30min_R1 1 MNASPLFLHFVILHGTPNFDTGGVCRPFLK 30 1 Q68CZ2;E9PCX8;Q68CZ2-2;C9JHU5;Q68CZ2-3;Q68CZ2-4 Q68CZ2 TNS3 Tensin-3 0 0 147.41 4.22E-19 9527200 1941.8 2657.4 1998.5 1356.3 4606.2 3210.3 3648 3882.7 2742.3 2955.9 FALSE FALSE TRUE 1805.689847 2446.817946 2772.372722 3157.534944 4028.447445 2814.245826 2735.231815 2998.693969 2980.004772 2215.7234 0.81494371 1.104297561 1.2512269 1.425058265 1.818118383 1.270125064 1.234464471 1.353370176 1.34493537 1 11.11356208 -4.498523429 1.748338631 1.371553092 0.763449954 0.417201349 0.193942074 0.545069075 2.379665004 0.05581794 0.474484063 3.17E-05 4.498523429 -0.608103138 MNEEIS(ph)S(ph)DS(ph)ESESLAPR ddPTM_HeLa_A486_30min_R1 1 MNEEISSDSESESLAPR 17 0 O43818 O43818 RRP9 U3 small nucleolar RNA-interacting protein 2 3 0 MNEEIS(1)S(0.998)DS(0.992)ES(0.01)ESLAPR 117.03 7.02E-05 141480000 100610 119740 106070 41040 136100 108950 121660 130680 100420 104220 TRUE FALSE FALSE 93557.75855 110251.3663 147143.1447 95543.19405 119029.0689 95508.85672 91219.38121 100927.0167 109124.4865 78122.63364 1.197575583 1.411260235 1.883489301 1.222989927 1.523618232 1.222550396 1.167643447 1.291904945 1.396835736 1 16.25345297 -6.271019999 23.60630994 1.231021967 1.457474405 0.249811679 0.199797529 494.4878355 1218395.24 0.070152573 0.062732354 5.36E-07 6.271019999 0.226452437 MNGVMFPGNS(ph)PSYTER ddPTM_HeLa_A485_30min_R1 10 MNGVMFPGNSPSYTER 16 0 Q9NY27-2;Q9NY27-3;Q9NY27 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 MNGVMFPGNS(0.995)PS(0.005)YTER;MNGVMFPGNS(0.988)PS(0.012)YTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(0.996)PS(0.004)YTER;MNGVMFPGNS(0.988)PS(0.012)YT(0.001)ER;MNGVMFPGNS(0.988)PS(0.011)YTER;MNGVMFPGNS(0.986)PS(0.012)Y(0.002)TER;MNGVMFPGNS(0.952)PS(0.048)YTER;MNGVMFPGNS(0.999)PS(0.001)YTER;MNGVMFPGNS(0.987)PS(0.013)YTER ;;;;;;;;; 319.11 1.83E-78 4501970000 3982904 5277557 4902480 3887089 6051681 4404658 5734363 6223491 4257411 5231819 TRUE FALSE FALSE 4868887.254 5894721.383 6716111.361 4099430.829 5449154.391 4635279.082 4509169.5 4697170.074 5111834.336 3927622.808 1.239652454 1.500836936 1.70996852 1.043743514 1.387392491 1.180174194 1.14806582 1.19593207 1.301508466 1 21.90522496 -5.270432706 24.97815133 1.195083929 1.485221073 0.463300995 0.149252615 564.8885819 1568926.335 0.041156335 0.062079859 5.36E-06 5.270432706 0.290137144 MNGVMFPGNS(ph)PSYTER ddPTM_HeLa_A486_30min_R1 12 MNGVMFPGNSPSYTER 16 0 Q9NY27-2;Q9NY27-3;Q9NY27 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 MNGVMFPGNS(0.82)PS(0.179)YTER;MNGVMFPGNS(0.993)PS(0.006)YTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(1)PSYTER;MNGVMFPGNS(0.881)PS(0.119)YTER;MNGVMFPGNS(0.975)PS(0.025)YTER;MNGVMFPGNS(0.98)PS(0.019)Y(0.001)TER;MNGVMFPGNS(0.986)PS(0.014)YTER;MNGVMFPGNS(0.966)PS(0.032)YT(0.002)ER;MNGVMFPGNS(0.996)PS(0.004)YTER;MNGVMFPGNS(0.993)PS(0.007)YTER ;;;;;;;;;;; 456.56 2.44E-215 4487185000 5115483 5262570 4267400 1706440 5657290 4866641 5414420 5449450 4229005 5685470 TRUE FALSE FALSE 4756914.058 4845544.787 5919851.565 3972678.559 4947699.936 4266244.314 4059674.848 4208729.196 4595578.558 4261791.306 1.116177146 1.136973737 1.389052429 0.932161684 1.16094374 1.001044868 0.952574764 0.987549341 1.078320882 1 22.02302852 -5.281156892 24.98935232 1.018329107 1.206358403 0.495497443 0.091428953 678.8273987 860322.9519 0.025745076 0.038249987 5.23E-06 5.281156892 0.188029296 MNIAS(ph)PGTVHK ddPTM_HeLa_A486_30min_R1 1 MNIASPGTVHK 11 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 0 MNIAS(0.996)PGT(0.004)VHK 65.472 0.013954 93176000 128970 158230 98860 54199 157570 163670 171620 175300 141360 155560 TRUE FALSE FALSE 119929.869 145691.2785 137141.2396 126178.0111 137806.1013 143478.0595 128678.8608 135388.0168 153613.1986 116606.7635 1.028498394 1.249423912 1.176100215 1.08208141 1.181801957 1.230443717 1.103528277 1.161064871 1.317360966 1 16.83129195 -10.71561528 6.360576499 0.997362156 1.169863398 0.288712845 0.08006517 0.002915528 0.000130355 0.075466732 0.018050311 1.92E-11 10.71561528 0.172501241 MNIAS(ph)PGTVHKR ddPTM_HeLa_A485_30min_R1 1 MNIASPGTVHKR 12 1 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 0 MNIAS(0.788)PGT(0.212)VHKR 59.673 0.018138 375110000 200980 208300 186550 206870 318310 241200 307380 300210 213950 304130 TRUE FALSE FALSE 245687.3076 232658.873 255562.608 218170.7843 286617.9387 253828.859 241705.7519 226583.0268 256887.8025 228315.9881 1.076084551 1.019021379 1.119337328 0.955565075 1.255356408 1.11174369 1.058645756 0.992409812 1.12514154 1 17.80067236 -9.270886813 0.598873932 0.993085981 1.080788506 0.078324624 0.079362759 20.93920217 7.139022834 0.433940568 0.032942448 5.36E-10 9.270886813 0.087702525 MNILGSQS(ph)PLHPSTLSTVIHR ddPTM_HeLa_A485_30min_R1 3 MNILGSQSPLHPSTLSTVIHR 21 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 MNILGS(0.001)QS(0.993)PLHPS(0.001)T(0.005)LSTVIHR;MNILGSQS(1)PLHPSTLSTVIHR;MNILGSQS(1)PLHPSTLSTVIHR ;; 306 5.58E-88 2117190000 616033 1323698 1550043 253347 1796615 919254 1196327 1091530 1033693 652042 TRUE FALSE FALSE 753067.4156 1478492.966 2123468.408 267186.7051 1617737.702 967384.718 940721.9634 823830.556 1241145.704 489499.9293 1.538442338 3.020415076 4.33803619 0.545836044 3.304878316 1.976271415 1.921802041 1.683004443 2.535538065 1 18.90094913 -9.021336153 0.196521531 0.281892456 2.903902453 0.14850726 0.993179555 18.54962882 1.342713676 12.62878406 3.643362123 9.52E-10 9.021336153 2.622009996 MNILGSQS(ph)PLHPSTLSTVIHR ddPTM_HeLa_A486_30min_R1 3 MNILGSQSPLHPSTLSTVIHR 21 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 MNILGS(0.004)QS(0.99)PLHPS(0.003)T(0.003)LSTVIHR;MNILGSQS(1)PLHPSTLSTVIHR;MNILGSQS(1)PLHPSTLSTVIHR ;; 283.64 3.95E-73 2381830000 1245444 1469200 1640164 54823 1952785 862778 1092868 1026151 1437672 338754 TRUE FALSE FALSE 1158144.807 1352775.241 2275279.426 127630.7146 1707848.496 756337.2224 819420.8672 792518.818 1562290.567 253927.7935 4.560921793 5.327401238 8.96034024 0.502626014 6.725724951 2.978552336 3.226983766 3.121040069 6.15249928 1 17.95405879 -5.257204137 24.99957395 3.590607548 6.187338829 0.280150993 2.108096917 515.0249491 3040052.482 0.552921487 0.916149558 5.53E-06 5.257204137 2.596731282 MNLASSFVNGFVNAAFGQDK ddPTM_HeLa_A485_30min_R1 2 MNLASSFVNGFVNAAFGQDK 20 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ; ; 163.56 4.42E-15 26387800 16995.3 16642.1 13853.6 21516.5 21411.1 17369 23550.3 22639.1 13959.3 30476.5 FALSE FALSE TRUE 20775.84585 18588.24883 18978.62314 22691.89191 19279.33571 18278.41398 18518.58602 17086.82523 16760.80347 22879.26943 0.908064216 0.812449405 0.829511764 0.991810162 0.842655215 0.79890724 0.809404604 0.746825649 0.732575991 1 14.48175336 -6.000247171 24.99999909 0.803385167 0.881370819 0.120350237 0.082021647 16.52521817 1671707.8 0.025091634 0.028156126 9.99E-07 6.000247171 0.077985652 MNLASSFVNGFVNAAFGQDK ddPTM_HeLa_A486_30min_R1 3 MNLASSFVNGFVNAAFGQDK 20 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ;; ;; 205.31 3.41E-23 28362600 32275.8 29134.6 17980.4 13217.1 28602.3 32117.8 38355.8 36006 26315.1 40633.1 FALSE FALSE TRUE 30013.43309 26825.86819 24942.89241 30770.07676 25014.73283 28155.43239 28758.77315 27808.21981 28596.11406 30458.30728 0.985393995 0.880740612 0.818919193 1.010235942 0.82127784 0.924392552 0.944201294 0.91299295 0.938860909 1 14.89454815 -8.43614018 0.586758754 1.002547026 0.903767439 0.174253604 0.05832477 2.717443881 1.745976367 0.07258387 0.025083539 3.66E-09 8.43614018 -0.098779587 MNS(ph)LTFK ddPTM_HeLa_A485_30min_R1 1 MNSLTFK 7 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MNS(0.99)LT(0.01)FK 68.557 0.022359 58368000 88066 77460 59952 114510 96800 72936 107220 109840 67407 157420 TRUE FALSE FALSE 107655.9779 86518.27319 82130.73961 120765.3913 87162.25211 76754.81618 84311.57109 82901.56778 80934.96661 118178.0911 0.910963926 0.732100784 0.694974329 1.021893231 0.737550009 0.649484312 0.713428101 0.701496927 0.684855931 1 16.85060308 -5.965496052 24.99982537 0.724986069 0.829144692 0.098676673 0.124456629 365.1593858 264574.6329 0.037367559 0.042370681 1.08E-06 5.965496052 0.104158623 MNS(ph)LTFK ddPTM_HeLa_A486_30min_R1 2 MNSLTFK 7 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MNS(0.99)LT(0.01)FK;MNS(0.986)LT(0.014)FK ; 75.509 0.016506 137741000 265130 261950 127932 124698 236807 330330 357150 343960 214210 352170 TRUE FALSE FALSE 246545.7561 241192.128 177470.6965 290303.2459 207104.4579 289577.2431 267787.2925 265647.8166 232777.8953 263984.3398 0.93394084 0.913660743 0.672277366 1.09969874 0.784533121 1.096948567 1.014405978 1.006301422 0.881786759 1 18.01009282 -5.723012041 1.44844585 0.989818161 0.864958888 0.144897426 0.118288697 0.749529695 3.273416566 0.042991112 0.061664535 1.89E-06 5.723012041 -0.124859274 MNS(ph)LTFKK ddPTM_HeLa_A485_30min_R1 1 MNSLTFKK 8 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MNS(0.851)LT(0.149)FKK 57.836 0.022736 459320000 313040 250940 135640 362590 351230 310040 438290 429900 234390 524830 TRUE FALSE FALSE 382674.668 280285.2501 185818.8805 382397.3736 316260.308 326273.215 344645.761 324466.3509 281429.923 393999.5398 0.971256637 0.711384714 0.471622075 0.970552843 0.802692075 0.828105574 0.874736456 0.823519619 0.714289979 1 18.58783442 MNS(ph)LTFKK ddPTM_HeLa_A486_30min_R1 1 MNSLTFKK 8 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MNS(0.934)LT(0.066)FKK 78.653 0.005987 654350000 921020 739200 302430 461090 728040 984090 1310100 1272700 554650 1354800 TRUE FALSE FALSE 856461.2542 680623.0999 419538.9954 1073440.822 636722.4345 862682.9813 982299.1232 982933.9928 602727.5086 1015549.262 0.843347818 0.670201954 0.413115357 1.057005172 0.62697346 0.849474283 0.96725896 0.96788411 0.593499037 1 19.95382879 -5.26688408 24.99991098 0.85824482 0.645019737 0.258182832 0.173466604 641.3960781 2945038.295 0.047894752 0.073399651 5.41E-06 5.26688408 -0.213225084 MNS(ph)TGGQTPR ddPTM_HeLa_A485_30min_R1 3 MNSTGGQTPR 10 0 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MNS(0.958)T(0.042)GGQTPR;MNS(0.952)T(0.048)GGQTPR;MNS(0.706)T(0.277)GGQT(0.016)PR ;; 149.71 3.94E-06 1056800000 902275 840926 832865 1149653 1177895 803717 1071345 842780 809792 1250076 TRUE FALSE FALSE 1102982.961 939264.9806 1140976.422 1212455.632 1060619.638 845798.3793 842443.3887 636086.8836 972309.8265 938455.0591 1.175317827 1.000863037 1.215802942 1.29196984 1.13017627 0.901266791 0.897691776 0.677802179 1.036075001 1 19.83992813 -6.249945299 4.068245818 0.879138183 1.167208766 0.571658407 0.112245886 0.154640162 6.12033821 0.039821189 0.037631397 5.62E-07 6.249945299 0.288070583 MNS(ph)TGGQTPR ddPTM_HeLa_A486_30min_R1 2 MNSTGGQTPR 10 0 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MNS(0.903)T(0.097)GGQTPR;MNS(0.755)T(0.244)GGQT(0.001)PR ; 129.29 8.75E-05 744400000 581840 592590 427250 218238 653380 619960 718290 661970 549058 707710 TRUE FALSE FALSE 541056.0206 545631.0102 592692.6422 508069.0931 571426.9879 543475.6385 538566.2447 511253.8817 596650.7895 530494.8096 1.019908227 1.028532231 1.117244941 0.957726794 1.07715849 1.024469285 1.015214918 0.963730224 1.124706178 1 19.01697911 -5.25984725 24.99995213 1.023732943 1.052558836 0.071637806 0.052412791 452.7581207 7109179.452 0.013885972 0.022422125 5.50E-06 5.25984725 0.028825893 MNSTGGQT(ph)PR ddPTM_HeLa_A485_30min_R1 3 MNSTGGQTPR 10 0 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MNS(0.003)T(0.083)GGQT(0.914)PR;MNST(0.002)GGQT(0.998)PR;MNSTGGQT(1)PR ;; 110.25 0.0035671 2336350000 1220190 1564360 1560580 1350050 1875940 1358940 1620510 1536070 1217600 1642480 TRUE FALSE FALSE 1491617.056 1747298.294 2137903.483 1423799.813 1689164.827 1430091.997 1274274.8 1159346.424 1461961.152 1233039.964 1.209706984 1.41706542 1.733847682 1.154706948 1.369918962 1.159809933 1.033441606 0.940234265 1.185655935 1 20.23378813 -6.256728983 1.318807128 1.028526539 1.418656242 0.515924796 0.154950835 0.349202221 1.232673642 0.074893592 0.067817295 5.54E-07 6.256728983 0.390129702 MNSTGGQT(ph)PR ddPTM_HeLa_A486_30min_R1 2 MNSTGGQTPR 10 0 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 MNST(0.001)GGQT(0.999)PR;MNST(0.001)GGQT(0.998)PR ; 93.766 0.0070532 1856500000 952820 1108430 951230 339640 1214050 1042410 1087600 1143300 958920 1098550 TRUE FALSE FALSE 886032.2384 1020593.97 1319571.731 790699.0845 1061772.528 913808.0526 815470.9765 882995.5481 1042039.958 823465.9296 1.075979232 1.239388217 1.602460628 0.960208621 1.289394607 1.109709606 0.990291094 1.072291538 1.265431781 1 19.65134944 -5.301107743 24.99933172 1.105152885 1.299288047 0.264007899 0.158544241 735.2037246 463330.0201 0.044725767 0.06634019 5.00E-06 5.301107743 0.194135162 MNT(ph)S(ph)RFADHHDLLTET(ph)K ddPTM_HeLa_A485_30min_R1 1 MNTSRFADHHDLLTETK 17 1 C9J4A2;C9JYK8;A2RUB1-1;A2RUB1-2 C9J4A2 C17orf104 3 0 MNT(0.668)S(0.696)RFADHHDLLT(0.637)ET(1)K 45.784 0.030109 1110700000 184020 434240 526680 84397 591770 490920 402130 534690 441900 190040 TRUE FALSE FALSE 224954.6141 485020.5906 721520.849 89007.39441 532851.301 516623.8121 316211.6404 403556.4391 530585.2767 142666.5254 1.57678624 3.399680403 5.057394135 0.623884223 3.734942723 3.62119853 2.216438926 2.82866943 3.719059359 1 17.12228734 -10.46802089 7.166344782 0.999692778 2.994599124 0.198701701 1.189467976 0.005651405 0.00041952 1.11463422 0.270303853 3.40E-11 10.46802089 1.994906346 MNYMQNHQAGAPAPS(ph)LSR ddPTM_HeLa_A485_30min_R1 1 MNYMQNHQAGAPAPSLSR 18 0 H0YJG4;Q9HCK8-2;Q9HCK8;A0A2R8Y840 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 MNYMQNHQAGAPAPS(0.5)LS(0.5)R 57.578 0.020705 582530000 450200 575960 486580 463970 719430 610440 765890 813930 534120 624080 TRUE FALSE FALSE 550345.4368 643313.5118 666586.1903 489315.5063 647801.0231 642401.6945 602251.3448 614312.3913 641312.9848 468508.3413 1.174675856 1.37311005 1.422784039 1.044411514 1.382688345 1.371163836 1.285465576 1.31120908 1.368840057 1 18.83771521 -9.900826481 8.815801147 1.000001805 1.30570228 0.412378966 0.108780068 1.55E-10 0 0.102942248 0.024967163 1.26E-10 9.900826481 0.305700475 MPARAS(ph)PPHSK ddPTM_HeLa_A486_30min_R1 1 MPARASPPHSK 11 1 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 MPARAS(0.994)PPHS(0.006)K 61.097 0.01348 194490000 154800 150750 118550 63533 211560 130410 177150 173620 120540 191390 TRUE FALSE FALSE 143949.3194 138804.021 164455.7349 147908.0348 185024.1721 114321.3401 132825.1963 134090.5161 130988.5043 143464.6983 1.003377982 0.967513421 1.146314995 1.030971637 1.289684322 0.796860423 0.925838885 0.934658614 0.913036488 1 17.13033626 -6.283256989 24.99991772 0.910730057 1.081021543 0.451840819 0.095374333 787.0355982 901829.4873 0.033490639 0.029562444 5.21E-07 6.283256989 0.170291486 MPCQSLQPEPINT(ph)PTHTK ddPTM_HeLa_A486_30min_R1 1 MPCQSLQPEPINTPTHTK 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 MPCQSLQPEPINT(0.959)PT(0.04)HT(0.002)K 84.181 0.00034973 0 47478 51702 31993 14626 42604 47300 50590 52365 42620 62218 TRUE FALSE FALSE 44150.03738 47604.94522 44381.5464 34050.06716 37260.20905 41464.60691 37931.84691 40442.63262 46314.33592 46638.20783 0.946649527 1.020728442 0.951613462 0.730089528 0.798920258 0.889069474 0.813321281 0.867156662 0.993055653 1 15.50922473 -5.018421939 24.63289723 0.858654195 0.984309504 0.255354618 0.079960285 700.8627508 937161.654 0.02156064 0.038275768 9.58E-06 5.018421939 0.125655309 MPDVHFKS(ph)PQISMSDIDLNLK ddPTM_HeLa_A485_30min_R1 2 MPDVHFKSPQISMSDIDLNLK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPDVHFKS(0.999)PQIS(0.001)MSDIDLNLK;MPDVHFKS(1)PQISMSDIDLNLK ; 182.02 2.42E-19 176590000 227400 106257 94618 331850 236050 131031 202914 153125 167595 499620 TRUE FALSE FALSE 277984.3455 118682.8318 129621.1356 349978.1252 212548.0332 137891.5805 159559.7662 115570.8537 201229.7792 375073.9288 0.741145476 0.31642517 0.345588231 0.933091048 0.566683037 0.367638404 0.425408843 0.308128198 0.536506976 1 18.51681546 -8.045338331 22.9007602 1.000000003 0.494118612 0.376083408 0.191815435 4478.692481 2262220.816 0.191585581 0.049467184 9.01E-09 8.045338331 -0.50588139 MPDVHFKS(ph)PQISMSDIDLNLK ddPTM_HeLa_A486_30min_R1 2 MPDVHFKSPQISMSDIDLNLK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPDVHFKS(0.974)PQIS(0.026)MSDIDLNLK;MPDVHFKS(1)PQISMSDIDLNLK ; 184.3 2.05E-19 256320000 280850 354110 186883 156244 307850 401030 417720 382770 247103 329510 TRUE FALSE FALSE 261163.8653 326049.034 259249.1025 363743.9281 269236.5824 351554.996 313202.0378 295621.6268 268522.087 246998.5512 1.057349786 1.320044317 1.049597664 1.47265612 1.090033043 1.423307927 1.268031882 1.196855712 1.087140332 1 17.91414305 -7.84013088 2.248868346 1.003512412 1.245559452 0.252105685 0.13699354 0.365949981 3.709690275 0.120632588 0.033961908 1.45E-08 7.84013088 0.24204704 MPDVHFKS(ph)PQISMSDIDLNLKGPK ddPTM_HeLa_A485_30min_R1 1 MPDVHFKSPQISMSDIDLNLKGPK 24 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPDVHFKS(1)PQISMSDIDLNLKGPK 197.36 8.02E-29 551290000 504310 315350 205940 574860 579230 488010 709950 792130 368350 952310 TRUE FALSE FALSE 616492.0197 352227.4393 282125.7759 606263.1462 521559.8274 513561.449 558263.3827 597858.8755 442274.4663 714916.643 0.862327134 0.492683228 0.394627512 0.848019349 0.729539356 0.718351509 0.780878985 0.836263754 0.61863781 1 19.44741551 -5.282257528 24.97868827 0.777504415 0.574159651 0.295898813 0.145220429 961.0772448 1153147.795 0.039942616 0.059317683 5.22E-06 5.282257528 -0.203344764 MPDVHFKS(ph)PQISMSDIDLNLKGPK ddPTM_HeLa_A486_30min_R1 1 MPDVHFKSPQISMSDIDLNLKGPK 24 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPDVHFKS(1)PQISMSDIDLNLKGPK 216.69 2.43E-38 534420000 603950 531290 212280 314410 501700 581010 815250 696910 329590 696560 TRUE FALSE FALSE 561616.2238 489188.6455 294480.5011 731962.3694 438772.1078 509330.8935 611265.8272 538238.8064 358159.1266 522136.8422 1.075611178 0.936897392 0.563991041 1.401859264 0.840339299 0.975473961 1.170700433 1.030838591 0.685948774 1 18.99406843 -4.252152249 21.58460501 0.962542152 1.075611606 0.024642385 0.222149095 949.2364822 2205810.275 0.053860602 0.580360453 5.60E-05 4.252152249 0.113069454 MPDYFSR ddPTM_HeLa_A486_30min_R1 1 MPDYFSR 7 0 H3BSL1 H3BSL1 CORO1A Coronin 0 0 57.811 0.011256 0 59045 51445 33061 48515 49820 56155 65001 66612 40163 88084 FALSE FALSE TRUE 54906.25041 47368.31084 45863.1046 112945.3718 43571.11105 49227.16704 48737.06229 51445.90173 43644.36118 66027.19307 0.831570265 0.717406096 0.694609334 1.710588722 0.659896461 0.745558985 0.738136214 0.779162332 0.661005855 1 16.0107727 MPEANQLHLPNLNS(ph)QVDSPSSEKS(ph)PVMTPFK ddPTM_HeLa_A485_30min_R1 1 MPEANQLHLPNLNSQVDSPSSEKSPVMTPFK 31 1 Q9UPQ0-10;Q9UPQ0-8;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 MPEANQLHLPNLNS(0.425)QVDS(0.528)PS(0.176)S(0.228)EKS(0.641)PVMT(0.002)PFK 74.03 0.0038433 149110000 114460 67451 42534 153100 96298 84143 110980 86558 71544 183070 TRUE FALSE FALSE 139921.2321 75338.8077 58269.09659 161463.4653 86710.233 88548.59737 87268.21638 65329.51478 85902.22456 137434.0182 1.018097513 0.548181656 0.423978702 1.174843518 0.630922636 0.644298978 0.634982645 0.47535185 0.62504339 1 17.06837962 MPEANQLHLPNLNSQVDS(ph)PSSEK ddPTM_HeLa_A486_30min_R1 1 MPEANQLHLPNLNSQVDSPSSEK 23 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 MPEANQLHLPNLNS(0.001)QVDS(0.998)PS(0.001)SEK 173.68 6.74E-15 153720000 77489 87571 48928 28208 62397 96957 95370 77807 78824 100670 TRUE FALSE FALSE 72057.42125 80631.55503 67874.23194 65669.64955 54570.58643 84995.43113 71507.41728 60092.04461 85656.52779 75461.57675 0.95488889 1.0685114 0.899454197 0.870239563 0.723157251 1.126340514 0.94760036 0.796326385 1.135101219 1 16.20345462 -7.778015923 24.99933346 1.06755059 0.926495278 0.200181605 0.115182801 472.9407333 713228.6222 0.111311438 0.029073303 1.67E-08 7.778015923 -0.141055311 MPEANQLHLPNLNSQVDSPS(ph)SEKSPVMTPFK ddPTM_HeLa_A485_30min_R1 1 MPEANQLHLPNLNSQVDSPSSEKSPVMTPFK 31 1 Q9UPQ0-10;Q9UPQ0-8;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 MPEANQLHLPNLNSQVDS(0.017)PS(0.458)S(0.312)EKS(0.213)PVMTPFK 182.64 4.47E-21 750330000 29786 29154 12631 49804 30826 30777 40525 26256 30293 57845 TRUE FALSE FALSE 36411.79294 32563.30669 17303.73252 52524.66641 27756.8552 32388.43613 31866.50269 19816.67483 36372.52724 43425.30606 0.838492488 0.749869365 0.39847117 1.2095405 0.639186173 0.745842438 0.73382333 0.456339324 0.837588276 1 15.4062484 -4.282764295 6.143111553 0.733967242 0.840135872 0.007364007 0.225077363 0.68997378 110.2095862 0.053794603 0.263311217 5.21E-05 4.282764295 0.106168631 MPEANQLHLPNLNSQVDSPSSEKS(ph)PVMTPFK ddPTM_HeLa_A485_30min_R1 1 MPEANQLHLPNLNSQVDSPSSEKSPVMTPFK 31 1 Q9UPQ0-10;Q9UPQ0-8;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 MPEANQLHLPNLNSQVDSPS(0.035)S(0.022)EKS(0.943)PVMTPFK 260.93 8.18E-64 1019000000 218440 144510 99552 294290 197670 186900 245260 153940 171520 426080 TRUE FALSE FALSE 267031.2244 161409.1874 136380.4275 310366.3175 177989.2807 196685.795 192858.1974 116185.9736 205942.4907 319866.0974 0.834821904 0.504614865 0.426367247 0.97030076 0.556449346 0.614900412 0.602934162 0.363233161 0.643839695 1 18.28710856 -8.0404048 23.34022427 1.000000004 0.603234552 0.319031372 0.170089357 4340.804381 2507504.095 0.163029963 0.042094155 9.11E-09 8.0404048 -0.396765452 MPEANQLHLPNLNSQVDSPSSEKS(ph)PVMTPFK ddPTM_HeLa_A486_30min_R1 1 MPEANQLHLPNLNSQVDSPSSEKSPVMTPFK 31 1 Q9UPQ0-10;Q9UPQ0-8;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 MPEANQLHLPNLNSQVDS(0.051)PS(0.039)S(0.188)EKS(0.7)PVMT(0.023)PFK 162.54 1.70E-14 771840000 141540 169620 82726 63781 148090 229710 229360 192330 168650 271580 TRUE FALSE FALSE 131618.7769 156178.6935 114759.7227 148485.3913 129515.1713 201370.7157 171971.7021 148540.6575 183268.7178 203574.6003 0.646538304 0.767181629 0.563723188 0.729390558 0.636204964 0.989174069 0.844760112 0.729662037 0.900253359 1 17.63519804 -6.246638724 24.99289549 0.872873182 0.671633952 0.613906143 0.088165476 606.6178633 1024356.464 0.028786573 0.028673281 5.67E-07 6.246638724 -0.20123923 MPEMHFKT(ph)PK ddPTM_HeLa_A485_30min_R1 1 MPEMHFKTPK 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPEMHFKT(1)PK 99.991 0.0019053 193220000 370230 209480 161350 558710 449250 324730 532560 551360 294020 835990 TRUE FALSE FALSE 452586.3862 233976.8638 221040.0793 589230.9126 404521.0926 341732.3607 418774.2054 416138.0955 353027.1171 627593.0783 0.721146236 0.372816196 0.352202864 0.938874142 0.644559519 0.544512635 0.667270274 0.663069925 0.562509577 1 19.25946992 -14 0.217984653 2.955227338 0.555218079 0.346762164 0.160774198 180.0364533 1.800845661 154.6445538 0.32843485 1.00E-14 14 -2.400009259 MPEMHFKT(ph)PK ddPTM_HeLa_A486_30min_R1 2 MPEMHFKTPK 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPEMHFKT(1)PK;MPEMHFKT(1)PK ; 121.76 0.00020742 833810000 825670 1005400 510630 754110 1115870 1366170 1890310 1618970 742610 1706700 TRUE FALSE FALSE 767794.7968 925728.4424 708359.6111 1755606.191 975907.1795 1197625.836 1417334.444 1250365.873 806980.0327 1279331.211 0.60015326 0.723603422 0.553695247 1.372284343 0.762826054 0.936134306 1.107871388 0.977359 0.630782729 1 20.28695839 -5.17376177 24.99999999 0.96446643 0.63559448 0.409770352 0.18889871 75.45008214 21511.57926 0.049792508 0.086243162 6.70E-06 5.17376177 -0.32887195 MPETVPQEEMPGPPLNS(ph)ESGEEAPTGR ddPTM_HeLa_A486_30min_R1 1 MPETVPQEEMPGPPLNSESGEEAPTGR 27 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 MPETVPQEEMPGPPLNS(0.495)ES(0.495)GEEAPT(0.011)GR 54.605 0.023421 67352000 28694 34232 33383 10493 42524 29922 30456 35301 32216 33959 TRUE FALSE FALSE 26682.69878 31519.33165 46309.79163 24428.23429 37190.2434 26230.52786 22835.58667 27263.73292 35008.50882 25455.44536 1.048211822 1.238215682 1.819248926 0.959646706 1.460993625 1.030448593 0.897080618 1.071037357 1.375285654 1 14.63568669 -6.279199896 24.51646522 1.068104644 1.310892316 0.178793682 0.246634852 1138.325675 1571329.627 0.08692196 0.076834278 5.26E-07 6.279199896 0.242787672 MPFFGNTFS(ph)PK ddPTM_HeLa_A486_30min_R1 1 MPFFGNTFSPK 11 0 B0QY53;B0QY54;A0A087WUW0;Q9Y3M2 B0QY53 CBY1 Protein chibby homolog 1 1 0 MPFFGNT(0.094)FS(0.906)PK 67.997 0.014886 11290000 21657 23173 14362 19070 26699 26706 36981 31053 19446 49161 TRUE FALSE FALSE 20138.95614 21336.68709 19923.35103 44395.92374 23350.16246 23411.28525 27727.96265 23982.90978 21131.59494 36850.76562 0.546500345 0.579002545 0.540649582 1.20474902 0.633641176 0.635299833 0.752439256 0.65081171 0.573437067 1 15.16940697 -11.3966181 2.117904815 3.168048826 0.686652492 0.210483786 0.185701245 8005890.535 733166.4707 83230204.9 0.047512137 4.01E-12 11.3966181 -2.481396334 MPFLSISS(ph)PK ddPTM_HeLa_A485_30min_R1 1 MPFLSISSPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPFLSISS(1)PK 222.2 5.19E-17 1635800000 1695800 1170900 940110 2758800 2208500 1317300 2236300 1870700 1258400 3831600 TRUE FALSE FALSE 2073024.86 1307826.57 1287895.81 2909506.258 1988613.985 1386271.791 1758496.236 1411907.892 1510949.337 2876452.635 0.720687987 0.454666471 0.447737534 1.011491106 0.69134251 0.481937986 0.611341975 0.490850388 0.525282189 1 21.45585928 -10.46959008 3.243393719 1.007514079 0.602805365 0.345044663 0.163699694 107334182.2 136350553.7 7319171.328 0.041997645 3.39E-11 10.46959008 -0.404708714 MPFLSISS(ph)PK ddPTM_HeLa_A486_30min_R1 2 MPFLSISSPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPFLSISS(1)PK;MPFLSISS(1)PK ; 248.5 2.20E-21 4713300000 1287870 1489950 879440 1200750 1567530 1860140 2523700 2223290 1185050 2437070 TRUE FALSE FALSE 1197596.964 1371880.936 1219982.72 2795406.683 1370915.771 1630654.839 1892243.567 1717095.401 1287771.088 1826811.809 0.655566686 0.750970039 0.667820688 1.530210539 0.750441706 0.892623329 1.035817459 0.939941045 0.70492816 1 20.80089659 MPFQTS(ph)PGGK ddPTM_HeLa_A485_30min_R1 1 MPFQTSPGGK 10 0 I6LM39;A0A087X1U4;P51608;P51608-2 I6LM39 MECP2 Methyl-CpG-binding protein 2 1 0 MPFQT(0.227)S(0.773)PGGK 66.664 0.017093 114210000 266720 264510 204030 320270 318830 294390 382510 449070 309200 621820 TRUE FALSE FALSE 326050.9438 295442.1436 279509.1874 337765.5391 287086.1657 309803.8052 300783.6137 338934.8784 371253.6038 466811.7177 0.698463495 0.632893589 0.598762149 0.723558399 0.614993486 0.663659016 0.64433604 0.726063347 0.79529624 1 18.83248125 -8.085962722 1.178072796 0.999318784 0.6506581 0.898044151 0.035807027 0.158997303 0.481965809 0.032767751 0.010277153 8.20E-09 8.085962722 -0.348660685 MPGGPKPGGGPGLS(ph)TPGGHPKPPHR ddPTM_HeLa_A485_30min_R1 1 MPGGPKPGGGPGLSTPGGHPKPPHR 25 2 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 MPGGPKPGGGPGLS(0.705)T(0.295)PGGHPKPPHR 148.19 1.49E-09 7177500000 4595800 4972700 3709800 3788300 6866100 5094000 6335600 6878000 4811500 6011100 TRUE FALSE FALSE 5618119.855 5554214.008 5082209.398 3995245.237 6182486.976 5360713.963 4981947.303 5191159.716 5777123.916 4512643.396 1.244973148 1.230811638 1.126215602 0.885344772 1.37003668 1.187932104 1.103997561 1.150358949 1.280208385 1 22.10554135 -10.26976186 4.971986704 0.999960118 1.170421583 0.155400779 0.122249114 5.45E-05 8.00E-06 0.119331103 0.028935278 5.37E-11 10.26976186 0.170461465 MPGGPKPGGGPGLS(ph)TPGGHPKPPHR ddPTM_HeLa_A486_30min_R1 1 MPGGPKPGGGPGLSTPGGHPKPPHR 25 2 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 MPGGPKPGGGPGLS(0.932)T(0.068)PGGHPKPPHR 144.78 1.92E-09 6807000000 8015600 6786700 4257000 554610 7381300 7078100 7695700 7648800 5916900 6172200 TRUE FALSE FALSE 7453747.833 6248897.175 5905424.406 1291160.108 6455468.526 6204875.987 5770154.463 5907335.212 6429781.656 4626640.946 1.611049554 1.350633699 1.276395656 0.279070739 1.395281934 1.34111898 1.247158474 1.276808657 1.389729986 1 22.14153371 MPGGPKPGGGPGLST(ph)PGGHPKPPHR ddPTM_HeLa_A486_30min_R1 2 MPGGPKPGGGPGLSTPGGHPKPPHR 25 2 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 MPGGPKPGGGPGLS(0.035)T(0.965)PGGHPKPPHR;MPGGPKPGGGPGLS(0.172)T(0.828)PGGHPKPPHR ; 139.19 7.02E-07 7397370000 5728990 4772800 3189220 495424 5221940 5205650 5702900 5532870 4147900 4532040 TRUE FALSE FALSE 5327417.386 4394585.946 4424171.394 1153372.109 4566955.593 4563429.83 4275974.101 4273156.283 4507443.312 3397187.685 1.568184592 1.293595277 1.302304083 0.339507915 1.344334201 1.343296354 1.258680561 1.257851105 1.326816099 1 21.69590949 MPIEDS(ph)SPEK ddPTM_HeLa_A486_30min_R1 1 MPIEDSSPEK 10 0 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MPIEDS(0.681)S(0.319)PEK 79.82 0.007762 73094000 176760 200140 112160 69396 147980 192940 211920 188790 164650 296970 TRUE FALSE FALSE 164370.0368 184280.1775 155591.3557 161557.3951 129418.9685 169137.0245 158895.3745 145806.6383 178921.9946 222606.779 0.738387382 0.827828237 0.698951561 0.725752359 0.581379278 0.759801769 0.713793961 0.654996397 0.803758068 1 17.764138 -8.06544955 5.14828176 0.999959043 0.714124272 0.673164734 0.060943696 0.220747506 15.45334738 0.060563376 0.015770699 8.60E-09 8.06544955 -0.285834771 MPIEDS(ph)SPEKGREEAASK ddPTM_HeLa_A485_30min_R1 1 MPIEDSSPEKGREEAASK 18 2 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MPIEDS(0.498)S(0.498)PEKGREEAAS(0.004)K 62.19 0.0083251 328610000 70539 69334 65744 142420 179020 131910 235060 262410 104620 260620 TRUE FALSE FALSE 86230.15719 77442.00817 90065.44144 150200.044 161196.1402 138816.6036 184837.5107 198053.5361 125616.2744 195652.2304 0.440731787 0.395814594 0.460334346 0.767688892 0.823891146 0.709506881 0.944724782 1.012273337 0.64203855 1 17.57793203 -5.309103237 2.356477861 0.854062923 0.410967814 0.746453109 0.110788198 0.149019115 1.619646736 0.033303716 0.059562889 4.91E-06 5.309103237 -0.443095108 MPIEDSS(ph)PEKGREEAASK ddPTM_HeLa_A486_30min_R1 1 MPIEDSSPEKGREEAASK 18 2 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 MPIEDS(0.195)S(0.805)PEKGREEAASK 137.72 1.29E-06 864810000 730340 650560 418090 787280 1116000 1104800 1751300 1786200 577500 1450300 TRUE FALSE FALSE 679146.9375 599007.2563 579985.6448 1832827.627 976020.8737 968501.0088 1313106.217 1379521.252 627558.165 1087135.44 0.624712352 0.550995979 0.533498977 1.685923905 0.897791423 0.890874286 1.2078589 1.268950677 0.577258492 1 20.05210026 MPIHDHDS(ph)GVEDEDFSPRPIPSPHPVSQK ddPTM_HeLa_A485_30min_R1 1 MPIHDHDSGVEDEDFSPRPIPSPHPVSQK 29 1 Q5T0C7;A0A0A0MR87;E9PSF2;Q15468;Q15468-2 Q5T0C7 STIL SCL-interrupting locus protein 1 0 MPIHDHDS(1)GVEDEDFSPRPIPSPHPVSQK 249.13 8.47E-51 502280000 344870 438000 373760 286030 509900 408230 539330 559320 350660 454510 TRUE FALSE FALSE 421585.1417 489220.2899 512029.3775 301655.0946 459132.5656 429604.2916 424097.7396 422145.893 421034.2456 341209.0216 1.235562705 1.433784744 1.500632589 0.884077136 1.345605 1.259064867 1.242926513 1.23720613 1.233948163 1 18.38029627 -13.99999999 0.117321617 0.159289171 1.397599532 0.229874492 0.152322538 246.5520335 1.885348647 49.5775638 1.606310974 1.00E-14 13.99999999 1.238310361 MPIHDHDS(ph)GVEDEDFSPRPIPSPHPVSQK ddPTM_HeLa_A486_30min_R1 1 MPIHDHDSGVEDEDFSPRPIPSPHPVSQK 29 1 Q5T0C7;A0A0A0MR87;E9PSF2;Q15468;Q15468-2 Q5T0C7 STIL SCL-interrupting locus protein 1 0 MPIHDHDS(1)GVEDEDFSPRPIPSPHPVSQK 118.86 4.42E-05 381960000 354630 321970 226960 78633 321340 334250 381370 364340 273210 354180 TRUE FALSE FALSE 329772.2683 296455.9246 314844.9902 183061.5979 281034.5408 293013.6334 285947.1923 281387.7355 296892.0628 265491.0227 1.242122106 1.116632576 1.185896936 0.689520859 1.058546304 1.103666823 1.077050325 1.059876649 1.118275337 1 18.01830355 -5.110527373 21.09948138 1.019052889 1.175182174 0.291422835 0.118570164 10.42541072 1970.714482 0.033195165 0.057495946 7.75E-06 5.110527373 0.156129285 MPLDLS(ph)PLATPIIR ddPTM_HeLa_A485_30min_R1 2 MPLDLSPLATPIIR 14 0 B8ZZU6;E9PBF9;P15336-4;P15336-5;P15336;C9JCI8;E9PEK8;H7C2N6;P15336-3;P15336-7 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR ; 259.68 1.09E-41 616750000 639230 762880 823740 646560 884120 631810 709390 696630 659980 777170 TRUE FALSE FALSE 781424.5082 852092.1798 1128475.705 681879.9356 796093.9085 664890.5946 557823.0313 525780.4002 792431.9323 583435.8218 1.339349555 1.460472854 1.934189953 1.168731693 1.364492681 1.139612224 0.956100072 0.901179497 1.35821611 1 19.15421444 -5.89591943 1.417872558 1.052918731 1.543399324 0.48008012 0.208116854 0.347949926 1.453950029 0.083699627 0.102858633 1.27E-06 5.89591943 0.490480593 MPLDLS(ph)PLATPIIR ddPTM_HeLa_A486_30min_R1 2 MPLDLSPLATPIIR 14 0 B8ZZU6;E9PBF9;P15336-4;P15336-5;P15336;C9JCI8;E9PEK8;H7C2N6;P15336-3;P15336-7 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR ; 206.66 4.98E-22 597020000 602490 674410 608080 203764 721740 611390 657740 691380 573040 624900 TRUE FALSE FALSE 560258.5623 620967.2954 843544.8609 474372.8897 631212.6392 535962.918 493166.4951 533967.8667 622711.5686 468420.9726 1.196057809 1.325660745 1.800826415 1.012706342 1.347532831 1.144190695 1.052827529 1.139931596 1.329384475 1 18.83744615 -5.303215465 24.99663537 1.156841802 1.429330581 0.356572067 0.180539866 553.0597427 330920.9716 0.050570779 0.075009244 4.97E-06 5.303215465 0.272488779 MPLIGLGTWK ddPTM_HeLa_A486_30min_R1 1 MPLIGLGTWK 10 0 V9GYG2;V9GYP9;Q5T621;P14550 V9GYG2 AKR1A1 Alcohol dehydrogenase [NADP(+)] 0 0 98.582 0.022182 9621700 22205 23726 22013 5834 28721 20141 19003 20276 20966 14880 FALSE FALSE TRUE 20648.54417 21845.86535 30537.02313 13581.84683 25118.54437 17656.2082 14248.24841 15659.59742 22783.34976 11153.95115 1.851231361 1.958576388 2.737776302 1.217671357 2.251986228 1.58295549 1.277417143 1.403950691 2.042625923 1 13.44526724 -6.199786315 1.188786756 1.449137059 2.056441139 0.263711364 0.435918248 0.671998711 1.962385754 0.212369302 0.202325746 6.31E-07 6.199786315 0.60730408 MPLLELGGETTPPLS(ph)TERSPEAVGSECPSR ddPTM_HeLa_A485_30min_R1 1 MPLLELGGETTPPLSTERSPEAVGSECPSR 30 1 Q9Y4K1;A0A0J9YWL0 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 MPLLELGGET(0.002)T(0.002)PPLS(0.373)T(0.373)ERS(0.25)PEAVGSECPSR 88.242 0.00039212 45221000 4982.7 7388.9 7151.5 9038.1 13875 7790.2 8606.3 12313 4865.1 11251 TRUE FALSE FALSE 6091.084425 8252.96758 9797.137449 9531.828517 12493.55628 8198.082826 6767.493698 9293.217444 5841.480945 8446.332759 0.721151368 0.977106611 1.159927951 1.128516812 1.47916932 0.970608554 0.801234558 1.100266555 0.691599669 1 13.04410937 -6.510475704 24.57353673 0.903672247 1.105647263 0.170925914 0.202668336 880.9641566 1745418.36 0.076281332 0.063910866 3.09E-07 6.510475704 0.201975017 MPLLELGGETTPPLS(ph)TERSPEAVGSECPSR ddPTM_HeLa_A486_30min_R1 1 MPLLELGGETTPPLSTERSPEAVGSECPSR 30 1 Q9Y4K1;A0A0J9YWL0 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 MPLLELGGET(0.041)T(0.041)PPLS(0.305)T(0.305)ERS(0.305)PEAVGS(0.002)ECPSR 61.283 0.0066374 66180000 11082 18023 10365 4644.7 22501 17757 17442 22318 12200 20491 TRUE FALSE FALSE 10305.20903 16594.79184 14378.60558 10813.09633 19678.71477 15566.32188 13077.82712 17236.6786 13257.50582 15359.92023 0.670915531 1.080395705 0.936111996 0.703981282 1.28117298 1.013437677 0.851425458 1.122185424 0.863123351 1 13.9068831 -4.249899406 24.21459332 0.983244263 0.67091524 0.276016925 0.151891894 1535.04989 3220938.722 0.037010727 0.556877075 5.62E-05 4.249899406 -0.312329022 MPLLELGGETTPPLSTERS(ph)PEAVGSECPSR ddPTM_HeLa_A485_30min_R1 2 MPLLELGGETTPPLSTERSPEAVGSECPSR 30 1 Q9Y4K1;A0A0J9YWL0 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 MPLLELGGETTPPLS(0.118)T(0.118)ERS(0.762)PEAVGS(0.001)ECPSR;MPLLELGGETTPPLS(0.058)T(0.058)ERS(0.885)PEAVGSECPSR ; 116.94 3.12E-05 184076000 20839 22609 25679.8 18067.2 30920 27866 20268.7 20990.7 22674.3 22806 TRUE FALSE FALSE 25474.56366 25252.92588 35179.82665 19054.16539 27841.49623 29325.02067 15938.12666 15842.69791 27224.82403 17120.88391 1.487923391 1.474977928 2.054790326 1.11291949 1.626171661 1.712821652 0.930917279 0.925343457 1.590152948 1 14.06346957 -6.758636795 24.99998952 1.105382021 1.576257874 0.397530021 0.281396126 75.96101334 677606.7693 0.109316796 0.080828792 1.74E-07 6.758636795 0.470875853 MPLLELGGETTPPLSTERS(ph)PEAVGSECPSR ddPTM_HeLa_A486_30min_R1 1 MPLLELGGETTPPLSTERSPEAVGSECPSR 30 1 Q9Y4K1;A0A0J9YWL0 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 MPLLELGGETTPPLS(0.016)T(0.016)ERS(0.968)PEAVGSECPSR 130.16 1.36E-06 77047000 11013 13738 10956 3335.6 18522 10968 11702 16740 10863 11310 TRUE FALSE FALSE 10241.04557 12649.35085 15198.45661 7765.445372 16198.79805 9614.879674 8774.035829 12928.66743 11804.61359 8477.902384 1.207969272 1.492037803 1.792714273 0.915963055 1.910708252 1.134110684 1.034930037 1.524984229 1.392397913 1 13.04949164 MPLPS(ph)PTESR ddPTM_HeLa_A485_30min_R1 2 MPLPSPTESR 10 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 MPLPS(0.997)PT(0.003)ESR;MPLPS(0.989)PT(0.011)ESR ; 143.24 6.04E-06 563290000 385680 442120 555980 430530 546820 399120 458720 359420 499280 566280 TRUE FALSE FALSE 471473.1854 493822.0881 761660.1383 454048.7637 492376.6808 420017.306 360710.7246 271271.6815 599480.9163 425116.8176 1.109043834 1.161615038 1.79164904 1.068056461 1.158215014 0.988004446 0.848497894 0.638110915 1.41015573 1 18.69749981 -5.857253099 1.866528744 0.950519879 1.328127314 0.246497017 0.257356888 0.447782324 3.207271355 0.092713471 0.113250091 1.39E-06 5.857253099 0.377607434 MPLPS(ph)PTESR ddPTM_HeLa_A486_30min_R1 4 MPLPSPTESR 10 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 MPLPS(0.995)PT(0.005)ESR;MPLPS(0.988)PT(0.012)ESR;MPLPS(0.991)PT(0.009)ESR;MPLPS(0.995)PT(0.005)ESR ;;; 117.25 0.0004016 639402000 650412 722656 630256 222733 819630 698720 695161 707298 674209 700906 TRUE FALSE FALSE 604821.4775 665390.1067 874308.002 518533.6803 716824.3627 612519.0305 521224.3651 546261.6856 732649.979 525394.5755 1.151175718 1.266457892 1.664097885 0.986941443 1.364354327 1.165826712 0.992062708 1.039717026 1.39447572 1 19.00304178 -6.463451652 6.133342645 1.105544552 1.288530456 0.165938487 0.192101176 0.414432125 32.63893341 0.068472879 0.059464936 3.44E-07 6.463451652 0.182985904 MPPAEK(ac)ASRIRAAEK ddPTM_HeLa_A485_30min_R1 1 MPPAEKASRIRAAEK 15 3 Q14676;Q14676-3;Q14676-2;Q14676-4;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 0 1 MPPAEK(1)ASRIRAAEK 56.648 0.034716 31437000 24457 11374 11058 50862 24600 24408 33966 32557 20251 65724 FALSE TRUE FALSE 29897.37527 12704.09036 15148.81436 53640.46227 22150.73762 25685.96514 26708.88662 24572.3447 24315.18995 49340.21636 0.605943335 0.257479421 0.307027725 1.087154987 0.448938802 0.520588823 0.541320825 0.498018584 0.492806715 1 15.59047642 -11.04779324 2.435617081 1.617637736 0.527599021 0.307785111 0.211982871 28304901.35 10230561.76 97348622.75 0.055379888 8.96E-12 11.04779324 -1.090038715 MPQDGS(ph)DDEDEEWPTLEK ddPTM_HeLa_A485_30min_R1 6 MPQDGSDDEDEEWPTLEK 18 0 F8WBL2;Q13895 F8WBL2 BYSL Bystin 1 0 MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK ;;;;; 166.69 2.84E-12 873241000 529292 587347 519728 662692 750947 654873 877324 962903 584423 919437 TRUE FALSE FALSE 647031.1794 656032.1224 711997.0149 698893.1859 676180.0799 689161.1377 689876.5603 726749.5295 701711.3355 690238.2769 0.937402635 0.950442977 1.031523517 1.012539016 0.979632835 0.998439468 0.999475954 1.052896592 1.016621881 1 19.39673495 -4.688161963 6.291048339 1.011228685 0.941727169 0.666163301 0.019139418 0.126244913 8.304514552 0.005306127 0.014272843 2.05E-05 4.688161963 -0.069501516 MPQDGS(ph)DDEDEEWPTLEK ddPTM_HeLa_A486_30min_R1 4 MPQDGSDDEDEEWPTLEK 18 0 F8WBL2;Q13895 F8WBL2 BYSL Bystin 1 0 MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK ;;; 198.55 2.90E-25 783580000 585517 559753 382808 228966 619308 602314 727413 724025 503132 714252 TRUE FALSE FALSE 544475.2819 515396.1337 531041.5096 533044.4193 541628.6158 528006.6226 545406.5736 559180.3129 546743.8869 535398.6502 1.016953034 0.962639957 0.991861876 0.995602845 1.011636125 0.986193414 1.01869247 1.044418608 1.02119026 1 19.03025398 -6.865899119 5.224647202 1.025801577 0.993538298 0.365012989 0.017135767 0.198339951 8.398485564 0.007163804 0.004791418 1.36E-07 6.865899119 -0.032263279 MPS(ph)FGVSAPGR ddPTM_HeLa_A485_30min_R1 2 MPSFGVSAPGR 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 MPS(0.998)FGVS(0.002)APGR;MPS(0.999)FGVS(0.001)APGR ; 86.288 0.003319 94624000 83202 83651 83186 86867 120519 64712 99641 103765 89147 111527 TRUE FALSE FALSE 101709.9979 93433.25678 113959.9631 91612.32425 108519.7052 68100.22026 78351.88636 78316.47105 107037.9852 83725.3714 1.214804977 1.115949147 1.361116244 1.094200273 1.296138833 0.81337615 0.935820111 0.935397117 1.27844145 1 16.35337725 -6.2472689 24.93839304 0.985020099 1.212105229 0.419095139 0.131562166 767.4842804 1350683.557 0.042998623 0.042798054 5.66E-07 6.2472689 0.22708513 MPS(ph)FGVSAPGR ddPTM_HeLa_A486_30min_R1 2 MPSFGVSAPGR 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 MPS(0.999)FGVS(0.001)APGR;MPS(0.999)FGVS(0.001)APGR ; 101.39 0.0012003 182033000 70872 99695 73534 29978 101135 101127 101683 119512 84950 86042 TRUE FALSE FALSE 65904.23878 91794.80512 102008.3341 69790.299 88449.70525 88650.97892 76240.83791 92301.72653 92313.5344 64496.52316 1.021826225 1.423251993 1.581609816 1.082078468 1.371387184 1.374507874 1.182092215 1.431111663 1.431294741 1 15.97693377 -10.89382021 2.717161226 0.831334923 1.327750581 0.253468643 0.165596254 43652029.67 26815085.85 47160748.83 0.040394204 1.28E-11 10.89382021 0.496415658 MPS(ph)LEISAPK ddPTM_HeLa_A485_30min_R1 1 MPSLEISAPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPS(1)LEISAPK 134.38 5.36E-05 136820000 169540 173720 130020 191720 216320 159670 220440 226610 160540 270730 TRUE FALSE FALSE 207253.5881 194035.0428 178119.8086 202193.1781 194782.4213 168030.0743 173341.1932 171033.5422 192758.9054 203241.9934 1.019738021 0.954699566 0.876392745 0.994839574 0.958376849 0.826748801 0.852880796 0.841526593 0.94842066 1 17.63283899 -6.228738799 23.47212201 0.881446125 0.95767071 0.224485013 0.059825801 414.0354268 297189.6707 0.019451747 0.019449742 5.91E-07 6.228738799 0.076224585 MPS(ph)PFR ddPTM_HeLa_A485_30min_R1 6 MPSPFR 6 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 MPS(1)PFR;MPS(1)PFR;MPS(1)PFR;MPS(1)PFR;MPS(1)PFR;MPS(1)PFR ;;;;; 101.6 0.011539 5099150000 1227734 1765350 1788510 1257831 1938400 1660130 1916430 1989290 1467870 1649820 TRUE FALSE FALSE 1500839.193 1971792.326 2450154.275 1326543.123 1745406.09 1747051.84 1506969.075 1501413.508 1762458.045 1238550.237 1.211770947 1.59201643 1.978243758 1.071045068 1.409233181 1.410561952 1.216720186 1.212234647 1.423000854 1 20.24022096 -7.661060951 0.224847451 0.918292611 1.612768565 0.237405109 0.234626475 3.652622606 0.826626736 1.017100099 0.845808948 2.18E-08 7.661060951 0.694475954 MPS(ph)PFR ddPTM_HeLa_A486_30min_R1 5 MPSPFR 6 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 MPS(1)PFR;MPS(1)PFR;MPS(1)PFR;MPS(1)PFR;MPS(1)PFR ;;;; 106.36 0.0099967 3942760000 1292710 1417800 1260790 429386 1591540 1225170 1366170 1407950 1206480 1406480 TRUE FALSE FALSE 1202097.705 1305448.364 1749001.653 999632.308 1391914.213 1074020.982 1024339.816 1087390.52 1311058.658 1054288.253 1.140198329 1.238227174 1.658940662 0.948158442 1.320240654 1.018716635 0.971593692 1.031397739 1.243548578 1 20.00783794 -5.29542504 24.99274831 1.080954836 1.335032935 0.353262494 0.166859401 699.2230456 514200.8183 0.046994693 0.069708458 5.06E-06 5.29542504 0.254078099 MPS(ph)RPELLVKPALPDGSLVIQASEGPMK ddPTM_HeLa_A486_30min_R1 1 MPSRPELLVKPALPDGSLVIQASEGPMK 28 2 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 MPS(0.998)RPELLVKPALPDGS(0.002)LVIQASEGPMK 91.407 0.0010668 35660000 55551 47023 28609 29128 53168 69865 83198 85578 52453 73237 TRUE FALSE FALSE 51657.16177 43296.72623 39687.17098 67811.45605 46499.17367 61245.76664 62380.98042 66093.75755 56999.66827 54897.97851 0.940966556 0.788676148 0.722925908 1.235226832 0.847010672 1.115628814 1.136307422 1.203937911 1.038283555 1 15.74446541 -5.25374376 24.99681689 1.084669603 0.814638193 0.528439198 0.114614041 457.7942288 1486998.264 0.031109943 0.052629914 5.58E-06 5.25374376 -0.27003141 MPSARPPS(ph)PPLSSWER ddPTM_HeLa_A485_30min_R1 4 MPSARPPSPPLSSWER 16 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 MPS(0.001)ARPPS(0.997)PPLS(0.001)S(0.001)WER;MPSARPPS(0.978)PPLS(0.019)S(0.002)WER;MPS(0.003)ARPPS(0.995)PPLS(0.002)SWER;MPSARPPS(0.973)PPLS(0.01)S(0.017)WER ;;; 128.04 9.23E-06 4318240000 1764150 2369190 2406920 1818160 2776350 2212350 2344260 2359380 2377810 2534220 TRUE FALSE FALSE 2156579.081 2646246.161 3297339.868 1917481.477 2499926.846 2328185.225 1843389.7 1780738.356 2855014.656 1902485.593 1.133558693 1.390941498 1.733174685 1.007882259 1.314031946 1.223759714 0.968937535 0.936006224 1.500676098 1 20.8594541 -5.289696633 24.98983403 1.137359032 1.416396787 0.269765706 0.213591173 945.29768 835989.8619 0.060378197 0.089574882 5.13E-06 5.289696633 0.279037755 MPSARPPS(ph)PPLSSWER ddPTM_HeLa_A486_30min_R1 5 MPSARPPSPPLSSWER 16 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 MPS(0.007)ARPPS(0.99)PPLS(0.002)SWER;MPS(0.076)ARPPS(0.869)PPLS(0.037)S(0.018)WER;MPSARPPS(0.917)PPLS(0.035)S(0.048)WER;MPS(0.002)ARPPS(0.986)PPLS(0.006)S(0.007)WER;MPS(0.001)ARPPS(0.893)PPLS(0.106)S(0.001)WER ;;;; 136.62 3.34E-06 3947740000 1796860 2220870 1923860 875583 2621320 2240420 2708460 2781040 1980510 2106370 TRUE FALSE FALSE 1670909.393 2044880.173 2668830.115 2038401.474 2292529.603 1964019.759 2030774.661 2147857.902 2152182.201 1578921.242 1.058260126 1.295112206 1.690287042 1.291008962 1.45195944 1.243899764 1.286178567 1.360332514 1.363071282 1 20.59050778 -6.283906424 24.16937652 1.275434842 1.368682882 0.07384387 0.176077938 1743.981563 1876114.988 0.062812477 0.055445186 5.20E-07 6.283906424 0.093248041 MPSARPPSPPLSS(ph)WER ddPTM_HeLa_A485_30min_R1 1 MPSARPPSPPLSSWER 16 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 MPS(0.001)ARPPS(0.284)PPLS(0.31)S(0.406)WER 58.073 0.015376 195630000 200400 268950 279490 216730 322090 243460 270710 266190 217370 312290 TRUE FALSE FALSE 244978.2886 300401.3629 382884.9815 228569.4111 290021.5887 256207.1891 212870.597 200906.4851 260994.1652 234441.8503 1.044942651 1.281347006 1.63317676 0.974951404 1.237072597 1.092838966 0.907988897 0.856956575 1.113257573 1 17.8388706 -6.178311998 1.27166195 0.959837881 1.279403303 0.330263015 0.17528419 0.499781565 1.655528686 0.084075733 0.081458001 6.63E-07 6.178311998 0.319565422 MPSFGMLS(ph)PGK ddPTM_HeLa_A485_30min_R1 2 MPSFGMLSPGK 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 MPSFGMLS(1)PGK;MPSFGMLS(1)PGK ; 154.47 3.99E-07 905380000 946080 751850 583260 1448940 1167540 788740 1217130 1039760 765700 1927810 TRUE FALSE FALSE 1156532.232 839772.3173 799032.1455 1528091.923 1051295.618 830037.2068 957080.2325 784757.2297 919368.9666 1447242.446 0.799128187 0.580256832 0.552106627 1.055864501 0.726412925 0.573530171 0.661312992 0.5422431 0.635255668 1 20.4648752 -10.02613464 4.779592215 1.000005076 0.678531181 0.297475188 0.147182417 38148152.59 80023253.57 1711.680915 0.037130091 9.42E-11 10.02613464 -0.321473894 MPSFGMLS(ph)PGK ddPTM_HeLa_A486_30min_R1 2 MPSFGMLSPGK 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 MPSFGMLS(1)PGK;MPSFGMLS(1)PGK ; 166.38 5.15E-08 813310000 1035530 1330020 707840 627130 1275450 1346090 1762810 1574080 1075820 1621330 TRUE FALSE FALSE 962944.6945 1224624.371 981934.6046 1459990.333 1115471.168 1180023.102 1321736.293 1215696.346 1169072.944 1215338.415 0.792326386 1.007640634 0.80795159 1.201303534 0.917827623 0.970941992 1.087545886 1.000294511 0.961932026 1 20.21292666 -5.221052892 24.99979662 1.0165063 0.883139662 0.359061414 0.091610431 619.399086 383415.8675 0.023659178 0.040978404 6.01E-06 5.221052892 -0.133366639 MPTFS(ph)TPGAK ddPTM_HeLa_A485_30min_R1 1 MPTFSTPGAK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPT(0.144)FS(0.577)T(0.279)PGAK 84.687 0.0046667 159230000 609810 520040 430520 589590 716000 463570 622250 636730 483240 799200 TRUE FALSE FALSE 745460.1307 580854.1543 589787.2634 621797.8088 644712.526 487841.8084 489301.2042 480570.9691 580221.8355 599974.1482 1.242487085 0.96813197 0.983021127 1.036374335 1.074567176 0.813104714 0.815537145 0.800986127 0.96707806 1 19.19454081 -6.256700388 24.94268617 0.862915086 1.050070701 0.479912194 0.093394046 333.2297046 1753886.653 0.030901685 0.029943826 5.54E-07 6.256700388 0.187155615 MPTFS(ph)TPGAK ddPTM_HeLa_A486_30min_R1 1 MPTFSTPGAK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPT(0.211)FS(0.395)T(0.395)PGAK 73.951 0.011495 192890000 588850 654570 416500 242390 625990 536630 660170 624730 407530 580670 TRUE FALSE FALSE 547574.6558 602699.4893 577779.9543 564296.1697 547472.4971 470426.0467 494988.4834 482492.6168 442855.0285 435266.4525 1.258021731 1.384667911 1.327416691 1.296438461 1.257787027 1.080777174 1.137207981 1.108499435 1.017434323 1 18.73153931 -6.242886502 0.987631257 1.048483203 1.338156302 0.866877332 0.046791359 0.183567096 0.379952102 0.026672887 0.024748439 5.72E-07 6.242886502 0.289673098 MPTFST(ph)PGAK ddPTM_HeLa_A486_30min_R1 1 MPTFSTPGAK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPT(0.027)FS(0.234)T(0.739)PGAK 96.756 0.010675 163340000 616960 700960 451720 268470 608880 585400 712820 615260 431450 668800 TRUE FALSE FALSE 573714.29 645413.3767 626638.0815 625011.7277 532508.5928 513179.2999 534464.8966 475178.729 468848.4334 501328.1268 1.144388793 1.287407074 1.249955963 1.246711872 1.062195724 1.023639553 1.066097966 0.947839755 0.935212705 1 18.93539565 -5.889330504 2.704199806 0.996452721 1.239701871 0.839272494 0.049049686 0.107222158 1.589392447 0.017229522 0.020065944 1.29E-06 5.889330504 0.24324915 MPTQSEEEKLS(ph)PSPTTEDPR ddPTM_HeLa_A485_30min_R1 2 MPTQSEEEKLSPSPTTEDPR 20 1 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 MPT(0.001)QS(0.003)EEEKLS(0.957)PS(0.035)PT(0.002)T(0.003)EDPR;MPT(0.003)QS(0.004)EEEKLS(0.824)PS(0.08)PT(0.044)T(0.044)EDPR ; 53.751 0.0025616 204170000 452460 416420 349980 693350 577530 496170 682310 654350 430680 916640 TRUE FALSE FALSE 553108.166 465116.6966 479452.1659 731225.9548 520029.0854 522148.694 536528.8945 493869.6365 517113.5256 688138.5175 0.803774461 0.675905628 0.696737871 1.062614483 0.75570408 0.758784286 0.779681533 0.717689279 0.751467201 1 19.39233947 -11.12325123 2.375713613 1.435602507 0.778064517 0.299093699 0.101934815 16776270.13 4798385.022 39385352.23 0.026885312 7.53E-12 11.12325123 -0.657537989 MPTQSEEEKLS(ph)PSPTTEDPR ddPTM_HeLa_A486_30min_R1 2 MPTQSEEEKLSPSPTTEDPR 20 1 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 MPTQSEEEKLS(0.991)PS(0.006)PT(0.002)TEDPR;MPT(0.003)QS(0.005)EEEKLS(0.413)PS(0.386)PT(0.146)T(0.046)EDPR ; 86.32 0.00036873 851040000 758200 784950 444970 448490 768530 886920 1149600 1079130 652600 1386180 TRUE FALSE FALSE 705054.0953 722747.7033 617274.3007 1044107.385 672133.8011 777500.8279 861957.9208 833435.6562 709167.8934 1039071.505 0.678542421 0.695570709 0.594063351 1.004846519 0.646860007 0.748264988 0.829546298 0.802096537 0.682501531 1 19.98686351 -14 0.161152597 1.913306555 0.681091452 0.335036817 0.10963132 158.9373101 1.464548188 46.73764948 0.453605875 1.00E-14 14 -1.232215103 MPYMRYS(ph)R ddPTM_HeLa_A485_30min_R1 3 MPYMRYSR 8 1 A0A2R8YFC8;J3KT85;A0A2R8YD78;A0A2R8Y765;Q969G3-6;A0A2R8Y7U4;A0A2R8Y4T4;Q969G3-3;A0A2R8YES3 A0A2R8YFC8 SMARCE1 1 0 MPYMRYS(1)R;MPYMRY(0.001)S(0.999)R;MPYMRYS(1)R ;; 49.715 0.012165 739260000 103500 127772 116629 93986 180258 150641 159962 220537 144199 137643 TRUE FALSE FALSE 126523.2179 142713.8239 159774.9204 99120.21719 162310.8806 158528.3298 125784.8119 166449.955 173138.4166 103331.1332 1.224444308 1.381130928 1.546241829 0.959248332 1.570783901 1.534177792 1.217298291 1.610840313 1.675568739 1 16.65691547 MPYMRYS(ph)R ddPTM_HeLa_A486_30min_R1 1 MPYMRYSR 8 1 A0A2R8YFC8;J3KT85;A0A2R8YD78;A0A2R8Y765;Q969G3-6;A0A2R8Y7U4;A0A2R8Y4T4;Q969G3-3;A0A2R8YES3 A0A2R8YFC8 SMARCE1 1 0 MPYMRYS(1)R 59.35 0.014709 640820000 64809 88209 77758 31756 156700 77341 83715 60807 77838 58204 TRUE FALSE FALSE 60266.22377 81218.99759 107867.98 73929.57286 137045.2248 67799.45377 62768.62155 46962.57351 84585.06051 43629.33956 1.381323311 1.861568349 2.472372517 1.694492138 3.141125358 1.553987625 1.438679159 1.076398909 1.93871971 1 15.41301101 -6.501567449 24.9414161 1.387889746 2.118809567 0.337685243 0.501370008 880.8806965 1030930.132 0.174562026 0.152424519 3.15E-07 6.501567449 0.73091982 MQAS(ph)IEK ddPTM_HeLa_A485_30min_R1 9 MQASIEK 7 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK ;;;;;;;; 130.41 0.0016763 43125280000 41997050 37299160 30686940 54832970 57061720 40256320 59708450 60892200 37340030 67821980 TRUE FALSE FALSE 51339148.88 41660972.3 42039316.1 57828356.31 51380454.8 42364078.67 46951251.88 45958292.47 44833831.52 50915208.56 1.008326399 0.818242201 0.825673061 1.135777658 1.009137667 0.832051559 0.922145921 0.902643705 0.880558733 1 25.60159332 -3.763941509 0.002461394 1.84505699 4.45E-05 0.003922799 0.097657328 2020964.196 667.7760915 245083.458 255553.7256 0.00017221 3.763941509 -1.845012531 MQAS(ph)IEK ddPTM_HeLa_A486_30min_R1 7 MQASIEK 7 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK ;;;;;; 133.23 0.0016316 50934230000 61994500 60936300 34708470 28743470 61478320 68389810 85184420 79694620 45708390 81648410 TRUE FALSE FALSE 57649005.69 56107485.66 48148519.11 66916250.77 53767135.84 59952570.58 63870377.13 61549894.75 49670430.05 61203116.69 0.941929248 0.916742295 0.786700445 1.09334711 0.878503232 0.979567281 1.043580467 1.00566602 0.811567004 1 25.86710179 -5.252457088 24.99249575 0.972667099 0.885285841 0.199506374 0.083793288 1131.035798 3147009.277 0.022448152 0.038152022 5.59E-06 5.252457088 -0.087381258 MQAS(ph)IEKGGSLPK ddPTM_HeLa_A485_30min_R1 2 MQASIEKGGSLPK 13 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MQAS(1)IEKGGSLPK;MQAS(1)IEKGGSLPK ; 160.43 4.77E-12 1257210000 336760 808670 365030 257765 1259590 1381360 2161000 5112200 580120 571940 TRUE FALSE FALSE 411671.1002 903236.922 500069.7872 271846.0493 1134180.797 1453685.874 1699284.696 3858424.934 696544.7628 429365.8838 0.958788566 2.103653215 1.16467052 0.63313379 2.641525188 3.385657614 3.957661194 8.986333289 1.622263876 1 18.71184804 -6.246356375 1.878360102 4.482704702 1.297085092 0.23232703 2.066191427 0.417423285 2.899396853 0.819974294 0.758619134 5.67E-07 6.246356375 -3.18561961 MQAS(ph)IEKGGSLPK ddPTM_HeLa_A486_30min_R1 1 MQASIEKGGSLPK 13 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 1 0 MQAS(1)IEKGGSLPK 148.44 5.47E-07 0 397590 216170 189740 272930 606790 259410 610390 680090 129690 472460 TRUE FALSE FALSE 369720.9942 199039.9019 263212.4094 635394.8331 530680.7401 227406.6317 457663.966 525248.3533 140931.6336 354152.9408 1.04395856 0.562016798 0.743216783 1.794125531 1.498450751 0.642114198 1.292277751 1.483111652 0.397940035 1 18.434013 MQASIEK ddPTM_HeLa_A485_30min_R1 2 MQASIEK 7 0 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ; ; 131.03 0.0064808 249540000 385060 453320 368730 418580 565710 477140 609130 685670 426620 536760 FALSE FALSE TRUE 470715.2686 506331.8306 505138.5711 441445.9655 509385.9261 502122.3126 478984.3994 517508.3574 512238.7208 402955.6103 1.168156632 1.256544934 1.253583666 1.095520088 1.264124169 1.246098329 1.188677827 1.284281306 1.271203844 1 18.62026139 -10.55601867 5.76873919 0.999380136 1.225688315 0.597784854 0.055454851 0.000442788 3.41E-05 0.053777721 0.013008172 2.78E-11 10.55601867 0.226308179 MQEAMTQEVSDVFSDTT(ph)TPIK ddPTM_HeLa_A486_30min_R1 1 MQEAMTQEVSDVFSDTTTPIK 21 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 MQEAMTQEVSDVFSDT(0.002)T(0.604)T(0.394)PIK 173.59 7.02E-14 152740000 113850 111480 62254 57920 121840 123060 139770 148220 106370 131430 TRUE FALSE FALSE 105869.7029 102645.9188 86360.41602 134840.6871 106557.6911 107878.1084 104798.0677 114473.5416 115590.2372 98519.07253 1.074611242 1.041888805 0.876585759 1.368675969 1.081594542 1.094997198 1.063733803 1.161942948 1.173277765 1 16.58811543 -5.221599256 24.99994155 1.134789259 1.002114699 0.269192728 0.103511898 738.009815 463105.1865 0.027504622 0.047638785 6.00E-06 5.221599256 -0.13267456 MQEAMTQEVSDVFSDTTT(ph)PIK ddPTM_HeLa_A485_30min_R1 4 MQEAMTQEVSDVFSDTTTPIK 21 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 MQEAMTQEVS(0.001)DVFS(0.109)DT(0.088)T(0.072)T(0.731)PIK;MQEAMTQEVSDVFSDT(0.002)T(0.114)T(0.884)PIK;MQEAMTQEVSDVFSDTT(0.138)T(0.862)PIK;MQEAMTQEVSDVFSDT(0.015)T(0.048)T(0.937)PIK ;;; 195.24 5.85E-20 341438000 97305.3 97413 87843.5 131117.7 132664.6 101743 137731.3 111125.8 105972.1 168129.3 TRUE FALSE FALSE 118950.5283 108804.603 120340.4661 138280.3279 119456.0466 107070.1062 108303.8826 83872.02331 127239.7284 126217.7597 0.942423068 0.862038775 0.953435288 1.0955695 0.946428196 0.848296677 0.85807166 0.664502551 1.00809687 1 16.9455554 -6.223781988 5.528112213 0.853545751 0.962519537 0.122786764 0.104662369 0.337383084 28.42051051 0.035256137 0.034574182 5.97E-07 6.223781988 0.108973786 MQEAMTQEVSDVFSDTTT(ph)PIK ddPTM_HeLa_A486_30min_R1 2 MQEAMTQEVSDVFSDTTTPIK 21 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 MQEAMTQEVSDVFSDT(0.003)T(0.127)T(0.87)PIK;MQEAMTQEVSDVFS(0.002)DT(0.002)T(0.086)T(0.91)PIK ; 124.45 2.25E-06 234511000 88626 90317 60002 44816 89464 98067 99638 106137 71077 100187 TRUE FALSE FALSE 82413.77507 83159.95199 83236.38131 104333.9129 78242.5909 85968.49061 74707.51854 81971.92205 77238.01159 75099.52309 1.09739412 1.107329961 1.108347668 1.389275305 1.041852034 1.144727517 0.994780199 1.091510554 1.028475394 1 16.19651613 -6.458354871 1.883634766 1.037766112 1.160752555 0.275164923 0.091477911 0.49820621 3.524525043 0.04126644 0.032838152 3.48E-07 6.458354871 0.122986443 MQHLIAR ddPTM_HeLa_A485_30min_R1 10 MQHLIAR 7 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;;;;; ;;;;;;;;; 163.84 0.00065373 1368620000 1076460.6 1387935.1 1427360.7 1162550.6 1607905.8 1428119.9 1886654.8 1945437 1217570.5 1603375.6 FALSE FALSE TRUE 1315915.547 1550242.037 1955400.82 1226057.796 1447817.053 1502894.05 1483555.589 1468315.525 1461925.731 1203683.571 1.093240432 1.287914926 1.624514007 1.018588128 1.202821977 1.248579017 1.232512951 1.219851763 1.214543229 1 20.19902475 -13.75493895 0.199852391 3.20E-06 1.283606807 0.190577523 0.148990527 215.3919785 2.329321252 85.85235305 0.368374452 1.76E-14 13.75493895 1.283603603 MQHLIAR ddPTM_HeLa_A486_30min_R1 4 MQHLIAR 7 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 143.02 0.0048533 1030568000 757927 851764 729939 303771 1248211 872521 917672 943520 799577 900813 FALSE FALSE TRUE 704800.2312 784267.1186 1012590.929 707194.2397 1091648.737 764878.2302 688060.7595 728701.0929 868884.9781 675243.5615 1.043771865 1.161458122 1.499593609 1.047317265 1.616674041 1.132744203 1.018981592 1.079167777 1.286772696 1 19.36504845 -6.497499778 24.99064473 1.098975619 1.278211592 0.17867303 0.183664827 1297.439087 1277589.789 0.063511734 0.055773391 3.18E-07 6.497499778 0.179235973 MQIFVK ddPTM_HeLa_A485_30min_R1 2 MQIFVK 6 0 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;F5GZ39;Q49A90;M0R1V7;J3QSA3 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 0 0 ; ; 119.7 0.02073 101115000 176176 186889 171752 202434 222570 201358 248500 233090 181020 314470 FALSE FALSE TRUE 215365.7434 208744.0428 235290.212 213492.4568 200410.1493 211900.7935 195405.9449 175924.312 217349.0536 236078.4164 0.912263589 0.884214855 0.99666126 0.904328571 0.848913477 0.897586475 0.827716264 0.745194392 0.920664654 1 17.84890662 -5.604242881 4.973085939 0.859932193 0.929981613 0.109286789 0.067797038 0.354945255 15.51503286 0.019928637 0.02606618 2.49E-06 5.604242881 0.07004942 MQIFVK ddPTM_HeLa_A486_30min_R1 2 MQIFVK 6 0 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;F5GZ39;Q49A90;M0R1V7;J3QSA3 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 0 0 ; ; 120.96 0.020209 112311000 190067 242150 172547 80756 263490 256340 248170 243440 241420 272240 FALSE FALSE TRUE 176744.2848 222961.1521 239361.8194 188004.0492 230440.6273 224715.3771 186075.2411 188014.0263 262346.48 204069.332 0.866099198 1.092575498 1.172943612 0.921275369 1.129227136 1.101171719 0.91182364 0.92132426 1.285575238 1 17.63869986 -4.253936523 23.20584867 1.05517235 0.866098942 0.19838773 0.116357712 566.7634264 1752839.604 0.028442417 0.278247261 5.57E-05 4.253936523 -0.189073408 MQNNSS(ph)PS(ph)ISPNTSFTSDGSPSPLGGIKR ddPTM_HeLa_A485_30min_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIKR 29 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 MQNNS(0.117)S(0.862)PS(0.896)IS(0.124)PNTSFTSDGSPSPLGGIKR 125.68 2.43E-06 431560000 156130 275030 200200 156850 263560 324360 399320 557320 188860 203680 TRUE FALSE FALSE 190860.5799 307192.3661 274262.311 165418.3183 237319.041 341342.988 314002.0199 420636.3962 226762.4697 152906.3245 1.248219003 2.009023284 1.793662309 1.081827838 1.552055102 2.232366707 2.053558092 2.750941779 1.483015634 1 17.22228855 -6.242828249 22.33858729 2.022759114 1.552159579 0.096097509 0.499312838 370.3656324 444541.4321 0.159943728 0.159520589 5.72E-07 6.242828249 -0.470599535 MQNNSS(ph)PS(ph)ISPNTSFTSDGSPSPLGGIKR ddPTM_HeLa_A486_30min_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIKR 29 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 MQNNS(0.16)S(0.832)PS(0.57)IS(0.435)PNT(0.002)SFTSDGSPSPLGGIKR 110.91 9.00E-05 239580000 426750 344760 238280 154160 452380 312400 454690 474800 271130 476000 TRUE FALSE FALSE 396837.0287 317439.962 330548.3974 358892.2708 395638.2821 273859.2643 340921.7528 366698.4048 294631.7667 356806.5018 1.112191137 0.88966978 0.926407999 1.005845659 1.108831482 0.767528795 0.955480775 1.027723438 0.825746631 1 18.44478238 -6.241389747 24.98838417 0.919540161 0.997264514 0.183283895 0.096798791 1771.673016 2208083.558 0.03204825 0.032006581 5.74E-07 6.241389747 0.077724353 MQNNSS(ph)PSIS(ph)PNTSFTSDGSPSPLGGIKR ddPTM_HeLa_A485_30min_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIKR 29 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 MQNNS(0.155)S(0.843)PS(0.046)IS(0.955)PNT(0.001)SFTSDGSPSPLGGIKR 119.5 2.76E-05 325370000 141780 214240 145600 133780 225970 250420 299990 469190 166680 154690 TRUE FALSE FALSE 173318.4719 239293.5044 199463.4989 141088.0627 203471.6334 263531.604 235894.6858 354120.4168 200131.1471 116128.6299 1.49246979 2.060590094 1.717608304 1.214929194 1.752122914 2.269307787 2.031322389 3.049380823 1.723357516 1 16.82536417 -6.149447339 5.243839149 2.142025698 1.64101403 0.088696233 0.521540079 0.411443633 16.37969359 0.168227848 0.1685391 7.09E-07 6.149447339 -0.501011668 MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIKR ddPTM_HeLa_A486_30min_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIKR 29 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 MQNNS(0.042)S(0.259)PS(0.496)IS(0.156)PNT(0.004)S(0.017)FT(0.021)S(0.003)DGS(0.001)PSPLGGIKR 100.27 0.00040856 448450000 409090 333520 237210 141040 429090 291300 415150 433800 250420 460520 TRUE FALSE FALSE 380414.9035 307090.6605 329064.0647 328348.2478 375269.5311 255362.3677 311275.079 335033.2098 272126.6072 345202.7945 1.102004125 0.889594944 0.953248554 0.951174941 1.087098764 0.739745946 0.901716568 0.97054026 0.788309398 1 18.39708462 -6.248194254 24.89435934 0.879574574 0.985743457 0.278560224 0.092969663 1101.513879 2070308.021 0.029909762 0.029744224 5.65E-07 6.248194254 0.106168883 MQNNSSPSISPNT(ph)SFTSDGSPSPLGGIKR ddPTM_HeLa_A485_30min_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIKR 29 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 MQNNS(0.006)S(0.021)PS(0.015)IS(0.137)PNT(0.688)S(0.1)FT(0.028)S(0.004)DGS(0.001)PSPLGGIKR 145.16 2.95E-09 826080000 164170 282100 193200 144710 266560 289970 344310 431300 169460 209910 TRUE FALSE FALSE 200689.0501 315089.1411 264672.7197 152615.1409 240020.3505 305152.3808 270745.3557 325522.9987 203469.0676 157583.3001 1.273542628 1.999508456 1.679573404 0.968472806 1.523133164 1.936451265 1.718109442 2.065720153 1.291184202 1 17.26575513 -6.030953831 24.73890835 1.682100529 1.495873709 0.000570444 0.380290418 2092.894456 1672678.139 0.124704521 0.12485314 9.31E-07 6.030953831 -0.18622682 MQNT(ph)DDEERPQLS(ph)DDER ddPTM_HeLa_A485_30min_R1 2 MQNTDDEERPQLSDDER 17 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 2 0 MQNT(1)DDEERPQLS(1)DDER;MQNT(1)DDEERPQLS(1)DDER ; 141.36 1.45E-07 1154150000 562740 704940 536530 521270 457818 482319 483932 441587 478147 582850 TRUE FALSE FALSE 687919.5716 787376.6008 735014.7739 549745.6602 412236.0324 507572.477 380535.9748 333287.0959 574106.7171 437556.2216 1.572185556 1.799486699 1.679817901 1.256400053 0.942132718 1.160016592 0.869684754 0.761701193 1.312075315 1 18.73910888 -5.416817939 2.63752055 0.996595959 1.704399364 0.797578453 0.15195371 0.115567673 1.563434711 0.045530394 0.072546598 3.83E-06 5.416817939 0.707803406 MQNT(ph)DDEERPQLS(ph)DDER ddPTM_HeLa_A486_30min_R1 1 MQNTDDEERPQLSDDER 17 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 2 0 MQNT(1)DDEERPQLS(1)DDER 240.43 2.04E-42 489510000 726510 756540 486170 166570 491300 655300 543300 452620 689290 733920 TRUE FALSE FALSE 675585.4007 696589.0151 674428.0441 387783.378 429676.5728 574455.7486 407360.5936 349568.3066 749038.2122 550141.655 1.22802081 1.266199367 1.225917067 0.704879142 0.781028975 1.04419606 0.740464915 0.635415085 1.361536989 1 19.06944362 -5.236929242 19.88768499 0.875153054 1.242662722 0.384220535 0.198808491 58.0897509 47132.20404 0.052624518 0.090980022 5.80E-06 5.236929242 0.367509668 MQS(ph)LSLNK ddPTM_HeLa_A486_30min_R1 1 MQSLSLNK 8 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 MQS(0.999)LS(0.001)LNK 85.813 0.0047366 185390000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 MQYAPNTQVEILPQGHES(ph)PIFK ddPTM_HeLa_A485_30min_R1 2 MQYAPNTQVEILPQGHESPIFK 22 0 P40121-2;P40121;H7C0X8 P40121-2 CAPG Macrophage-capping protein 1 0 MQYAPNTQVEILPQGHES(1)PIFK;MQYAPNTQVEILPQGHES(1)PIFK ; 163.16 6.77E-14 387420000 158319 141425 116855 173936 178374 199573 249333 270276 122896 234560 TRUE FALSE FALSE 193536.5154 157963.4235 160084.5272 183437.6833 160614.4583 210022.3337 196060.9677 203990.3872 147560.0999 176088.5088 1.099086571 0.897068325 0.909113993 1.041735685 0.912123451 1.192708912 1.113422841 1.158453715 0.837988242 1 17.42594124 -6.237455448 24.91192815 1.073724884 0.96807234 0.13677287 0.108700595 1318.873642 1369904.307 0.035274404 0.035256435 5.79E-07 6.237455448 -0.105652544 MQYAPNTQVEILPQGHES(ph)PIFK ddPTM_HeLa_A486_30min_R1 4 MQYAPNTQVEILPQGHESPIFK 22 0 P40121-2;P40121;H7C0X8 P40121-2 CAPG Macrophage-capping protein 1 0 MQYAPNTQVEILPQGHES(1)PIFK;MQYAPNTQVEILPQGHES(1)PIFK;MQYAPNTQVEILPQGHES(1)PIFK;MQYAPNTQVEILPQGHES(1)PIFK ;;; 174.49 1.75E-14 564110000 377531 408013 276539 181359 450922 463986 512031 506910 380173 591680 TRUE FALSE FALSE 351068.0265 375680.5639 383622.3068 422212.9174 394363.1581 406744.1248 383915.4281 391497.6588 413126.7017 443519.4768 0.791550416 0.847044118 0.864950305 0.951960262 0.889167621 0.917082893 0.865611203 0.882706801 0.931473641 1 18.75863794 -1 0.045815109 1.212930878 0.328580665 0.613937742 0.034613503 469.6522796 1.634140493 7.918932314 30.40440563 0.1 1 -0.884350213 MRDAGDPS(ph)PPNK ddPTM_HeLa_A485_30min_R1 4 MRDAGDPSPPNK 12 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3;E9PMZ7;C9JMU2 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK ;;; 72.175 0.0022351 2203840000 1574840 1765970 1339760 1768510 2146180 2062640 2766420 3140740 1607760 2370690 TRUE FALSE FALSE 1925157.725 1972484.83 1835392.976 1865119.223 1932498.784 2170636.641 2175351.767 2370468.591 1930422.685 1779720.612 1.08171907 1.108311505 1.031281519 1.047984279 1.085843907 1.219650223 1.222299586 1.331932987 1.084677377 1 20.76321935 -6.191931614 5.319351103 1.195509543 1.068138995 0.233842673 0.086103327 0.254940319 13.76891151 0.027767746 0.027618338 6.43E-07 6.191931614 -0.127370547 MRDAGDPS(ph)PPNK ddPTM_HeLa_A486_30min_R1 4 MRDAGDPSPPNK 12 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3;E9PMZ7;C9JMU2 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK;MRDAGDPS(1)PPNK ;;; 88.087 0.0051206 1445990000 1595820 1490770 943730 654359 1652390 1593520 1930210 1942630 1155890 2039110 TRUE FALSE FALSE 1483961.259 1372635.956 1309167.53 1523380.821 1445131.838 1396927.704 1447251.042 1500335.556 1256083.476 1528503.584 0.970858868 0.898025998 0.856502755 0.996648512 0.945455316 0.913918501 0.946841772 0.981571501 0.821773327 1 20.5436885 -5.257597183 24.97924979 0.94193391 0.907418893 0.079651773 0.05468247 901.0117506 5857735.688 0.014595718 0.024123677 5.53E-06 5.257597183 -0.034515018 MREDYDS(ph)VEQDGDEPGPQR ddPTM_HeLa_A485_30min_R1 2 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 MREDYDS(1)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR ; 197.33 1.00E-25 2603400000 591820 899760 1050270 701540 1325770 888300 1173490 1145520 1013210 888880 TRUE FALSE FALSE 723468.3172 1004979.105 1438808.578 739863.3538 1193771.684 934810.0144 922764.275 864579.4239 1216551.953 667298.5746 1.084174828 1.506041139 2.156169117 1.108744094 1.788961837 1.400887174 1.382835675 1.295641047 1.823099883 1 19.3479729 -6.449498223 24.9999346 1.398854072 1.544653908 0.04201452 0.344552625 556.4975888 189590.7109 0.118677947 0.104664069 3.55E-07 6.449498223 0.145799837 MREDYDS(ph)VEQDGDEPGPQR ddPTM_HeLa_A486_30min_R1 1 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 MREDYDS(1)VEQDGDEPGPQR 227.66 2.50E-35 1313300000 633350 642500 689540 271700 1040100 668940 691480 807740 585130 769000 TRUE FALSE FALSE 588955.4356 591585.9601 956548.3545 632531.331 909640.9595 586412.9841 518464.3903 623835.2348 635849.5395 576437.3947 1.021716219 1.026279637 1.659414124 1.097311411 1.578039468 1.01730559 0.899428793 1.082225478 1.103067819 1 19.1368044 -6.417402192 23.51739405 1.017878254 1.276336262 0.279411176 0.205653304 27.2793647 6066.245378 0.072529025 0.063964543 3.82E-07 6.417402192 0.258458009 MREIVHLQAGQCGNQIGAK ddPTM_HeLa_A485_30min_R1 1 MREIVHLQAGQCGNQIGAK 19 1 P68371;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0R2T4;P04350;M0QYM7;M0R042 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 59.9 0.019084 27521000 10456 22943 14461 9479.6 23771 29563 35399 68926 14701 14707 FALSE FALSE TRUE 12781.90113 25625.98427 19810.72567 9997.446544 21404.27577 31110.87297 27835.71447 52021.79043 17651.35585 11040.81556 1.157695376 2.321022766 1.794317237 0.905498918 1.938649881 2.817805695 2.521164701 4.711770624 1.598736593 1 13.43055912 -6.15540563 4.015505623 2.762087702 1.599920357 0.163555524 0.978759693 0.348357685 9.86838423 0.32266988 0.322364433 6.99E-07 6.15540563 -1.162167345 MRGPGDLMGPQGLS(ph)PEEMAR ddPTM_HeLa_A485_30min_R1 1 MRGPGDLMGPQGLSPEEMAR 20 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 MRGPGDLMGPQGLS(1)PEEMAR 91.767 0.00026354 86349000 36354 41299 36825 58911 55327 39161 54752 60083 35692 75174 TRUE FALSE FALSE 44440.82188 46128.5588 50448.09992 62129.15876 49818.44962 41211.40941 43053.78792 45347.55004 42855.05701 56434.50527 0.78747606 0.817382177 0.893922958 1.100907299 0.882765772 0.730251983 0.762898296 0.803542971 0.759376853 1 15.78428991 -6.024009264 23.6993648 0.797092705 0.905877688 0.137577653 0.104068375 677.8671255 669116.5915 0.035304217 0.035527981 9.46E-07 6.024009264 0.108784984 MRIPNYQLS(ph)PTKLPSINK ddPTM_HeLa_A485_30min_R1 2 MRIPNYQLSPTKLPSINK 18 2 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 MRIPNYQLS(0.928)PT(0.072)KLPSINK;MRIPNYQLS(0.809)PT(0.191)KLPSINK ; 260.97 3.20E-58 2393300000 1326000 1785600 833570 1339400 1867000 2376000 3560900 4588700 1218800 2026200 TRUE FALSE FALSE 1620964.125 1994410.387 1141942.231 1412568.03 1681114.925 2500403.686 2800084.625 3463314.13 1463401.981 1521105.629 1.065648627 1.311158376 0.75073171 0.928645587 1.105192757 1.64380674 1.840821946 2.276839993 0.962064667 1 20.53668891 -6.224634254 4.459692569 1.645774185 1.018573215 0.290528644 0.386025673 0.229330103 10.7999282 0.130218222 0.126350172 5.96E-07 6.224634254 -0.62720097 MRIPNYQLS(ph)PTKLPSINK ddPTM_HeLa_A486_30min_R1 2 MRIPNYQLSPTKLPSINK 18 2 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 MRIPNYQLS(0.997)PT(0.003)KLPSINK;MRIPNYQLS(0.681)PT(0.319)KLPSINK ; 232.79 8.46E-36 1457460000 1526010 993940 528060 659860 1229710 1166130 1848820 1832010 790500 2227370 TRUE FALSE FALSE 1419044.579 915176.5745 732538.9739 1536187.427 1075468.305 1022264.737 1386225.681 1414901.315 859021.1765 1669622.054 0.849919642 0.548133976 0.438745387 0.920080939 0.644138775 0.61227314 0.830263159 0.847438085 0.514500377 1 20.67109013 -14 0.237444673 2.717405152 0.658685225 0.243325367 0.158483403 242.9483837 2.42792284 201.5622005 0.256950082 1.00E-14 14 -2.058719927 MRKET(ph)PPPLVPPAAR ddPTM_HeLa_A485_30min_R1 3 MRKETPPPLVPPAAR 15 2 Q9BQA1;Q9BQA1-2 Q9BQA1 WDR77 Methylosome protein 50 1 0 MRKET(1)PPPLVPPAAR;MRKET(1)PPPLVPPAAR;MRKET(1)PPPLVPPAAR ;; 99.021 0.00064316 2399170000 342980 480090 354260 319805 549000 521370 648970 825570 378120 442490 TRUE FALSE FALSE 419274.7177 536232.3493 485315.516 337275.1374 494339.6323 548668.127 510312.2579 623097.6631 454005.2157 332185.3864 1.262170869 1.614256289 1.460977923 1.015322019 1.488143827 1.651692547 1.536227296 1.875752783 1.366722421 1 18.34162908 -5.985420431 24.99718178 1.54683349 1.352305102 0.048795324 0.25551373 535.7784317 918605.8312 0.077236147 0.087544598 1.03E-06 5.985420431 -0.194528387 MRKET(ph)PPPLVPPAAR ddPTM_HeLa_A486_30min_R1 3 MRKETPPPLVPPAAR 15 2 Q9BQA1;Q9BQA1-2 Q9BQA1 WDR77 Methylosome protein 50 1 0 MRKET(1)PPPLVPPAAR;MRKET(1)PPPLVPPAAR;MRKET(1)PPPLVPPAAR ;; 95.205 0.00087081 3699480000 822790 721240 539850 303400 896950 696840 885920 906040 569730 915270 TRUE FALSE FALSE 765116.6699 664086.3157 748894.3777 706330.533 784446.1673 610870.9657 664253.4457 699754.4707 619114.6551 686080.4346 1.115199664 0.967942361 1.09155478 1.029515633 1.14337347 0.890378059 0.968185962 1.01993066 0.90239369 1 19.3880182 -6.26567499 24.99998201 0.958173861 1.062876138 0.487291859 0.057910845 344.6425501 2034188.211 0.019300434 0.017605686 5.42E-07 6.26567499 0.104702277 MRNCK(ac)MAR ddPTM_HeLa_A486_30min_R1 1 MRNCKMAR 8 2 O43173 O43173 ST8SIA3 "Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase" 0 1 MRNCK(1)MAR 41.502 0.035067 17616000 26525 48247 40856 16726 62695 49504 55669 57954 48520 46372 FALSE TRUE FALSE 24665.73448 44423.73201 56676.53736 38938.97329 54831.20849 43396.6998 41740.02739 44759.13933 52725.75267 34760.14937 0.709598058 1.278007512 1.630503274 1.120218814 1.57741579 1.248461258 1.200801152 1.287656703 1.516844824 1 15.08514666 -4.270542642 4.931897826 1.335127742 0.681333621 0.476387567 0.191272855 0.128080164 9.447029859 0.044818638 0.282811709 5.36E-05 4.270542642 -0.653794121 MRS(ph)PQPARPGSAAVPGAAFAPIPR ddPTM_HeLa_A485_30min_R1 5 MRSPQPARPGSAAVPGAAFAPIPR 24 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 MRS(0.992)PQPARPGS(0.008)AAVPGAAFAPIPR;MRS(0.999)PQPARPGS(0.001)AAVPGAAFAPIPR;MRS(1)PQPARPGSAAVPGAAFAPIPR;MRS(0.938)PQPARPGS(0.062)AAVPGAAFAPIPR;MRS(1)PQPARPGSAAVPGAAFAPIPR ;;;; 158.73 1.99E-10 20050580000 1107048 1414576 1338724 1168678 1808420 1375068 1646048 1903884 1333782 1577175 TRUE FALSE FALSE 1353307.008 1579998.358 1833973.717 1232519.92 1628367.355 1447064.434 1294356.398 1436953.464 1601459.813 1184014.298 1.142981981 1.334441958 1.548945582 1.040967091 1.375293658 1.22216804 1.093193215 1.213628472 1.352567968 1 20.17525507 -6.139664806 1.112693771 1.181311398 1.307521018 0.104488718 0.153746298 1.232383909 3.201217822 0.077294332 0.078275239 7.25E-07 6.139664806 0.126209619 MRS(ph)PQPARPGSAAVPGAAFAPIPR ddPTM_HeLa_A486_30min_R1 4 MRSPQPARPGSAAVPGAAFAPIPR 24 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 MRS(0.952)PQPARPGS(0.048)AAVPGAAFAPIPR;MRS(0.999)PQPARPGS(0.001)AAVPGAAFAPIPR;MRS(1)PQPARPGSAAVPGAAFAPIPR;MRS(0.999)PQPARPGS(0.001)AAVPGAAFAPIPR ;;; 162.49 2.79E-14 10660200000 3036770 3510500 3056040 1211197 4370650 3110520 3832210 3884390 2873400 3311990 TRUE FALSE FALSE 2823908.105 3232315.195 4239420.532 2819727.827 3822442.322 2726775.668 2873350.525 2999999.193 3122468.626 2482646.147 1.13745896 1.301963713 1.70762174 1.135775161 1.539664574 1.098334401 1.157374171 1.208387751 1.257717951 1 21.24344722 -6.282341783 24.95448865 1.158200288 1.367378519 0.287840692 0.17241365 1123.675408 1341503.947 0.05963642 0.052651527 5.22E-07 6.282341783 0.209178231 MRS(ph)VLISLK ddPTM_HeLa_A485_30min_R1 1 MRSVLISLK 9 1 P09496-2;P09496-4;P09496-3;P09496;C9J8P9;P09496-5 P09496-2 CLTA Clathrin light chain A 1 0 MRS(1)VLISLK 81.565 0.0016427 0 151610 156400 137530 135160 226520 169020 254480 299660 148320 180360 TRUE FALSE FALSE 185335.1215 174689.6195 188408.0701 142543.4486 203966.8734 177869.6258 200108.2691 226167.9152 178086.4635 135399.5713 1.368801391 1.290178528 1.3914968 1.052761447 1.506407085 1.313664616 1.477909178 1.670373939 1.315266081 1 17.04686365 MRT(ph)PSNLAAAR ddPTM_HeLa_A485_30min_R1 3 MRTPSNLAAAR 11 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;H0Y5B5 Q86U86-8 PBRM1 Protein polybromo-1 1 0 MRT(0.981)PS(0.019)NLAAAR;MRT(0.999)PS(0.001)NLAAAR;MRT(1)PSNLAAAR ;; 128.76 5.79E-05 709030000 137739 185646 168460 141613 226287 160044 191410 243050 152212 190349 TRUE FALSE FALSE 168378.5654 207355.6848 230780.3642 149348.9596 203757.0717 168423.6564 150513.6898 183441.6064 182759.5522 142898.4974 1.178308858 1.451069735 1.614995038 1.045140168 1.425886734 1.178624404 1.05329092 1.283719631 1.278946634 1 17.12463122 -5.268498669 24.99504902 1.197431137 1.418419065 0.313941116 0.157144922 683.8980813 2421499.95 0.04370994 0.066386072 5.39E-06 5.268498669 0.220987928 MRT(ph)PSNLAAAR ddPTM_HeLa_A486_30min_R1 2 MRTPSNLAAAR 11 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;H0Y5B5 Q86U86-8 PBRM1 Protein polybromo-1 1 0 MRT(0.993)PS(0.007)NLAAAR;MRT(0.998)PS(0.002)NLAAAR ; 110.44 0.00064751 416720000 104878 115250 110492 43785 150164 110766 138846 134215 104127 120964 TRUE FALSE FALSE 97526.59379 106117.1703 153277.4615 101933.6928 131329.0309 97100.81711 104105.2622 103657.1744 113152.8122 90673.82706 1.075576017 1.17031754 1.690426736 1.124179888 1.448367574 1.070880322 1.148129131 1.143187376 1.247910404 1 16.46839856 -6.278979727 24.84262559 1.132602384 1.306195979 0.206607412 0.175404248 1343.909581 1903391.278 0.061535579 0.054395319 5.26E-07 6.278979727 0.173593594 MRVS(ph)SGER ddPTM_HeLa_A485_30min_R1 1 MRVSSGER 8 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 MRVS(0.907)S(0.093)GER 73.499 0.0068576 609620000 131110 301370 246160 117300 279410 276320 284460 405780 194640 162710 TRUE FALSE FALSE 160274.9672 336612.5999 337224.8276 123707.802 251590.9593 290787.6879 223682.7972 306261.8188 233702.4627 122149.3915 1.312122519 2.755745206 2.760757328 1.012758234 2.059698835 2.380590558 1.831223181 2.507272571 1.913251142 1 16.89828715 -8.030744067 22.70045611 0.999999982 2.096306331 0.256616373 0.546506674 1574.52751 1162582.005 0.522363395 0.134873649 9.32E-09 8.030744067 1.096306349 MRVS(ph)SGER ddPTM_HeLa_A486_30min_R1 1 MRVSSGER 8 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 MRVS(0.5)S(0.5)GER 115.18 0.00048192 302250000 162930 149480 133500 44784 185970 110510 152400 167130 93919 154020 TRUE FALSE FALSE 151509.4484 137634.6604 185194.7753 104259.4153 162643.9085 96876.39978 114267.9081 129078.1474 102059.9745 115452.3895 1.312311066 1.192133493 1.604079188 0.903051169 1.408753073 0.839102596 0.989740521 1.11802058 0.884000539 1 16.81693851 -5.883026362 1.194441206 0.981560909 1.324017487 0.3660448 0.190538465 0.50687769 1.528684822 0.078690329 0.101348304 1.31E-06 5.883026362 0.342456577 MRVSS(ph)GER ddPTM_HeLa_A485_30min_R1 7 MRVSSGER 8 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 MRVS(0.016)S(0.984)GER;MRVS(0.054)S(0.946)GER;MRVS(0.155)S(0.845)GER;MRVS(0.032)S(0.968)GER;MRVS(0.004)S(0.996)GER;MRVS(0.189)S(0.811)GER;MRVS(0.409)S(0.591)GER ;;;;;; 133.07 0.00024989 5427560000 1150824 2679332 2182352 992732 2567272 2428517 2840404 3751620 1842317 1303178 TRUE FALSE FALSE 1406820.829 2992656.57 2989694.82 1046962.435 2311665.385 2555670.395 2233528.481 2831529.313 2212053.123 978319.7078 1.437997024 3.058976065 3.05594868 1.070163902 2.362893609 2.612305951 2.283025133 2.894278108 2.261073865 1 19.89994648 -9.152475692 14.00193522 1.000000007 2.366105479 0.293653101 0.620832382 0 0 0.596155992 0.144589066 7.04E-10 9.152475692 1.366105472 MRVSS(ph)GER ddPTM_HeLa_A486_30min_R1 5 MRVSSGER 8 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 MRVS(0.083)S(0.917)GER;MRVS(0.207)S(0.793)GER;MRVS(0.088)S(0.912)GER;MRVS(0.146)S(0.854)GER;MRVS(0.158)S(0.842)GER ;;;; 126.67 0.00028899 5484370000 1626980 1453590 1347210 555147 1861680 1139460 1536480 1678420 1012638 1702200 TRUE FALSE FALSE 1512937.104 1338402.235 1868885.792 1292410.272 1628170.735 998885.0104 1152036.453 1296280.406 1100414.277 1275958.041 1.185726376 1.048939065 1.464692202 1.012894022 1.276037834 0.782850986 0.902879575 1.015927142 0.862421994 1 20.28314946 -6.255406539 24.99911325 0.913190361 1.193966326 0.541513664 0.131026372 387.357954 1605151.142 0.042176216 0.041126056 5.55E-07 6.255406539 0.280775965 MRYVASYLLAALGGNS(ph)SPSAK ddPTM_HeLa_A485_30min_R1 1 MRYVASYLLAALGGNSSPSAK 21 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 MRYVASYLLAALGGNS(0.504)S(0.414)PS(0.082)AK 44.382 0.028031 16536000 3995.3 15277 5100.8 4178.4 7458.7 12604 16976 56516 4263.1 4259.9 TRUE FALSE FALSE 4884.040701 17063.51226 6987.798182 4406.655412 6716.085639 13263.92595 13348.93892 42655.36239 5118.665067 3197.985328 1.527224237 5.335706862 2.185062615 1.377947351 2.100098953 4.147588119 4.174171408 13.33819828 1.600590541 1 11.6429476 -6.770052858 2.928819795 6.209362826 2.67590079 0.078596002 3.361783178 0.443336104 7.804892111 1.445698067 0.979516057 1.70E-07 6.770052858 -3.533462035 MRYVASYLLAALGGNSS(ph)PSAK ddPTM_HeLa_A485_30min_R1 1 MRYVASYLLAALGGNSSPSAK 21 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 MRYVASYLLAALGGNS(0.034)S(0.962)PS(0.005)AK 133.15 4.20E-07 25541000 4186.4 27595 8542.6 3961.7 10246 31655 31606 115540 6123.1 6137.6 TRUE FALSE FALSE 5117.650237 30821.99521 11702.86323 4178.117639 9225.872264 33312.40685 24853.1199 87203.63384 7351.950006 4607.609274 1.110695359 6.689368254 2.539899226 0.906786446 2.0023122 7.229868001 5.393929568 18.9260045 1.595610558 1 12.16980267 -6.376767732 3.350818919 8.059442769 2.76944687 0.131225456 4.894492349 0.416779225 8.746916414 1.782191861 1.54648393 4.20E-07 6.376767732 -5.2899959 MRYVASYLLAALGGNSSPSAK ddPTM_HeLa_A485_30min_R1 4 MRYVASYLLAALGGNSSPSAK 21 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ;;; ;;; 253.83 1.75E-52 279988000 97052 501091 138852 53276 220209 504051 643930 2366250 105366 125048 FALSE FALSE TRUE 118640.8826 559689.2335 190219.1329 56186.33298 198284.2188 530442.3309 506349.0951 1785923.477 126511.9897 93875.83494 1.263806417 5.962016039 2.026284326 0.598517531 2.112196593 5.650467251 5.39381722 19.02431524 1.347652352 1 16.51846621 -4.253095342 23.85071697 5.098481198 1.263802692 0.037620618 5.143332462 2198.141004 6282921.511 1.331321686 14.29821996 5.58E-05 4.253095342 -3.834678506 MRYVASYLLAALGGNSSPSAK ddPTM_HeLa_A486_30min_R1 2 MRYVASYLLAALGGNSSPSAK 21 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ; ; 219.34 7.73E-35 20938100 140982 41243 31066.4 23188.4 82123 28256.8 52585 56729 21284.7 61421 FALSE FALSE TRUE 131099.8898 37974.75448 43096.14207 53983.76708 71822.36757 24770.76331 39427.67681 43813.04509 23129.67493 46040.78182 2.847473146 0.824806899 0.936042794 1.172520643 1.559972805 0.538017869 0.85636419 0.951613838 0.502373635 1 15.49062471 -4.2593577 24.93514836 0.938739667 2.847473824 0.80278381 0.285529296 79.35496462 950474.3067 0.073398088 0.46831317 5.50E-05 4.2593577 1.908734157 MS(ph)AIPAEES(ph)DQLLIR ddPTM_HeLa_A486_30min_R1 1 MSAIPAEESDQLLIR 15 0 Q9UKF6 Q9UKF6 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 2 0 MS(1)AIPAEES(1)DQLLIR 42.568 0.02523 12738000 9092 7200.4 8762.4 2521.3 10258 8288.4 8649.7 7784.9 8581.2 6042.5 TRUE FALSE FALSE 8454.697751 6629.814081 12155.43595 5869.713819 8971.345988 7265.861478 6485.453573 6012.448213 9325.025325 4529.41867 1.866618736 1.463722955 2.683663585 1.295908868 1.980683757 1.60414879 1.431851203 1.327421608 2.058768686 1 12.14511018 -6.453902156 4.53211747 1.484578062 1.849786884 0.170508318 0.41970601 0.439945784 17.37962879 0.148116301 0.126781257 3.52E-07 6.453902156 0.365208822 MS(ph)GFIYQGK ddPTM_HeLa_A485_30min_R1 3 MSGFIYQGK 9 0 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;Q15052-2;Q15052;F6SJA5 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK ;; 168.3 7.78E-06 3483400000 3875270 2712300 2394150 3943630 4962990 2785150 4729170 3572880 3328690 4841540 TRUE FALSE FALSE 4737310.442 3029479.891 3279845.714 4159060.521 4468857.289 2930976.147 3718744.196 2696625.578 3996727.55 3634633.18 1.303380618 0.833503614 0.902386995 1.144286181 1.229520853 0.806402188 1.023141542 0.741925098 1.09962336 1 21.79337834 -6.274605307 24.97958732 0.923646461 1.062189541 0.165526476 0.162546231 1588.90224 3014599.571 0.057053685 0.05060305 5.31E-07 6.274605307 0.13854308 MS(ph)GFIYQGK ddPTM_HeLa_A486_30min_R1 5 MSGFIYQGK 9 0 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;Q15052-2;Q15052;F6SJA5 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK;MS(1)GFIYQGK ;;;; 168.3 7.78E-06 6593780000 4895140 6101390 3882840 2477030 6075450 6632520 8208340 8051160 4535190 5719280 TRUE FALSE FALSE 4552015.965 5617893.636 5386379.634 5766651.022 5313410.41 5814267.117 6154526.513 6218086.624 4928303.921 4287135.062 1.061785061 1.310407429 1.256405398 1.345105983 1.239384888 1.356212723 1.435580271 1.450406048 1.149556487 1 22.03158244 -4.260410914 24.08808549 1.303508536 1.061784945 0.194117357 0.128734887 75.29337103 1763050.398 0.030417866 0.180587575 5.49E-05 4.260410914 -0.241723591 MS(ph)GFIYQGKLPTTGMTITK ddPTM_HeLa_A485_30min_R1 2 MSGFIYQGKLPTTGMTITK 19 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;F6SJA5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 MS(1)GFIYQGKLPTTGMTITK;MS(1)GFIYQGKLPTTGMTITK ; 220.17 5.49E-35 1545790000 546600 1037800 466880 287320 1154500 1058200 1727700 3101400 525680 445860 TRUE FALSE FALSE 668189.2843 1159161.682 639598.3405 303015.5641 1039553.926 1113605.716 1358562.781 2340776.787 631179.1542 334715.3074 1.996291384 3.463127191 1.910872692 0.905293416 3.105785434 3.327023566 4.058860622 6.993336531 1.885719416 1 18.35257501 -6.181834636 2.56185523 3.913628357 2.161771822 0.106069122 1.61121256 0.488070779 6.27838466 0.584050097 0.569619172 6.58E-07 6.181834636 -1.751856535 MS(ph)GFIYQGKLPTTGMTITK ddPTM_HeLa_A486_30min_R1 2 MSGFIYQGKLPTTGMTITK 19 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;F6SJA5 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 MS(1)GFIYQGKLPTTGMTITK;MS(1)GFIYQGKLPTTGMTITK ; 202.2 7.33E-26 578630000 351857 226641 167060 172173 405887 247593 456024 465597 147366 389196 TRUE FALSE FALSE 327193.6413 208681.1417 231750.106 400827.4451 354976.8677 217047.493 341921.9719 359590.727 160139.8035 291738.7884 1.121529445 0.715301325 0.794375363 1.37392579 1.216762672 0.743978866 1.172014095 1.232577708 0.548915022 1 18.15431769 MS(ph)GGSTMSSGGGNTNNSNSK ddPTM_HeLa_A485_30min_R1 2 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 MS(1)GGSTMSSGGGNTNNSNSK;MS(0.981)GGS(0.018)T(0.001)MSSGGGNTNNSNSK ; 288.98 7.52E-74 120180000 233860 208631 181146 330381 300479 254079 337254 302842 230920 420593 TRUE FALSE FALSE 285881.3502 233028.5806 248159.4435 348428.8775 270562.2557 267382.1836 265196.9278 228569.5247 277263.5259 315746.9055 0.905412991 0.738023323 0.785944182 1.103506864 0.856895985 0.846824399 0.83990349 0.723901076 0.878119535 1 18.26840907 -11.61082863 1.875439324 3.0851397 0.850899824 0.16111507 0.100391938 10260834.5 419427.7314 91166227.62 0.026224016 2.45E-12 11.61082863 -2.234239876 MS(ph)GGSTMSSGGGNTNNSNSK ddPTM_HeLa_A486_30min_R1 3 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 MS(0.999)GGS(0.001)TMSSGGGNTNNSNSK;MS(0.712)GGS(0.286)T(0.002)MSSGGGNTNNSNSK;MS(0.965)GGS(0.006)T(0.028)MSSGGGNTNNSNSK ;; 414.94 1.88E-175 656432000 415370 438827 235098 147006 394928 447851 481168 492683 388564 520510 TRUE FALSE FALSE 386254.708 404052.7503 326134.2417 342237.3973 345392.4477 392599.697 360774.6771 380509.8361 422245.0404 390170.908 0.98996286 1.035578876 0.835875343 0.877147399 0.885233728 1.006224936 0.924658066 0.975238872 1.08220534 1 18.57374669 -7.559382882 5.026833328 1.04011895 0.935522592 0.315149455 0.061154658 0.242665983 14.99953091 0.045741147 0.016865354 2.76E-08 7.559382882 -0.104596358 MS(ph)LPDVDLDLKGPK ddPTM_HeLa_A485_30min_R1 2 MSLPDVDLDLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MS(1)LPDVDLDLKGPK;MS(1)LPDVDLDLKGPK ; 173.37 1.16E-12 422820000 822370 493940 270670 1055060 821940 766220 1237900 1193490 501090 1557180 TRUE FALSE FALSE 1005303.369 551701.9863 370802.0965 1112695.256 740104.7676 806338.0944 973412.5523 900784.7062 601654.1667 1169003.684 0.859965955 0.471942043 0.317194977 0.951832121 0.633107301 0.68976523 0.832685616 0.770557628 0.514672601 1 20.15684805 -5.265918076 24.99997387 0.754332379 0.541925101 0.228484033 0.184014607 573.6734118 3202232.155 0.050495523 0.077848924 5.42E-06 5.265918076 -0.212407278 MS(ph)LPDVDLDLKGPK ddPTM_HeLa_A486_30min_R1 2 MSLPDVDLDLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MS(1)LPDVDLDLKGPK;MS(1)LPDVDLDLKGPK ; 147.56 3.55E-08 432180000 844720 788080 388700 503440 774070 1038820 1314860 1208530 712310 1456280 TRUE FALSE FALSE 785509.4901 725629.6707 539215.0497 1172033.762 676978.9227 910660.9503 985868.1208 933374.101 774053.6043 1091618.009 0.719582751 0.664728563 0.493959467 1.073666569 0.620161006 0.83423042 0.903125555 0.855037287 0.709088342 1 20.05803667 -2.190908537 0.093230718 1.111693391 2.79E-11 0.24171384 0.147564386 164.9706441 1.421478774 2.705742431 23.57149071 0.006443049 2.190908537 -1.111693391 MS(ph)LPLLAGGVADDINTNKK ddPTM_HeLa_A485_30min_R1 2 MSLPLLAGGVADDINTNKK 19 1 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 MS(1)LPLLAGGVADDINTNKK;MS(1)LPLLAGGVADDINTNKK ; 133.74 1.57E-06 367460000 577820 440060 245034 685430 503940 456552 704380 619650 373704 879960 TRUE FALSE FALSE 706354.0655 491521.189 335682.2733 722873.3053 453765.9642 480456.3568 553883.4587 467679.8659 448702.965 660602.1665 1.06925787 0.744050223 0.508145886 1.094264206 0.686897481 0.727300607 0.83845238 0.707959934 0.679233263 1 19.33342218 -4.258783436 24.06089838 0.766310384 1.069258049 0.231646942 0.159163066 205.805645 1864260.565 0.037718529 0.24911635 5.51E-05 4.258783436 0.302947666 MS(ph)LPLLAGGVADDINTNKK ddPTM_HeLa_A486_30min_R1 2 MSLPLLAGGVADDINTNKK 19 1 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 MS(1)LPLLAGGVADDINTNKK;MS(1)LPLLAGGVADDINTNKK ; 191.4 9.79E-19 418460000 422210 367060 144649 168142 283150 408620 481520 430740 304082 503240 TRUE FALSE FALSE 392615.2593 337972.8288 200660.9666 391443.0734 247634.6867 358208.6189 361038.603 332669.905 330440.0726 377225.4285 1.040797437 0.895943919 0.531939131 1.037690049 0.656463398 0.949587679 0.957089782 0.881886214 0.875975074 1 18.5250674 MS(ph)NIYIQEPPTNGK ddPTM_HeLa_A485_30min_R1 1 MSNIYIQEPPTNGK 14 0 D6REK3;Q6UX04-2;Q6UX04 D6REK3 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 0 MS(0.497)NIY(0.006)IQEPPT(0.497)NGK 61.097 0.0198 963410000 1516900 925150 502190 2116500 1197400 1045200 1712300 1414800 888140 3045200 TRUE FALSE FALSE 1854329.172 1033338.245 687970.9789 2232119.036 1078182.652 1099925.056 1346453.117 1067818.082 1066381.551 2286087.683 0.811136504 0.452011641 0.300938142 0.976392573 0.471627864 0.481138613 0.588977023 0.467094106 0.466465726 1 21.12444931 -10.71738244 6.888633798 1.005057422 0.552515486 0.336340061 0.18644492 0.014220683 0.000583426 0.177272741 0.042788351 1.92E-11 10.71738244 -0.452541935 MS(ph)NMLK ddPTM_HeLa_A485_30min_R1 2 MSNMLK 6 0 A0A140T8Y7 A0A140T8Y7 1 0 MS(1)NMLK;MS(1)NMLK ; 84.097 0.011516 1635280000 947220 2401900 3249400 395900 880160 2587500 844720 1229910 2397900 512040 TRUE FALSE FALSE 1157925.821 2682781.311 4451488.279 417527.0145 792528.18 2722977.499 664238.6713 928272.6441 2879136.535 384397.8514 3.012310857 6.979178738 11.58041925 1.086184569 2.06173936 7.083747969 1.727997877 2.414874695 7.489991228 1 18.55224075 -5.283423673 24.99275339 3.370082085 7.169491908 0.278234191 2.892987023 1047.809419 1191195.427 0.816869653 1.212731464 5.21E-06 5.283423673 3.799409824 MS(ph)NMLK ddPTM_HeLa_A486_30min_R1 1 MSNMLK 6 0 A0A140T8Y7 A0A140T8Y7 1 0 MS(1)NMLK 57.559 0.028661 149100000 142630 327690 543870 67320 410480 142090 146050 182630 235390 121770 TRUE FALSE FALSE 132632.3735 301722.651 754471.0293 156724.3622 358993.7708 124560.3805 109506.7452 141049.1358 255793.7947 91277.99941 1.453059603 3.30553532 8.265639412 1.717000407 3.932971506 1.364626539 1.199705799 1.545269799 2.802359784 1 16.47797955 -6.065243041 1.836860535 1.587787528 4.049604383 0.245582087 1.814365109 0.502228784 3.388513243 0.713846672 0.750207722 8.61E-07 6.065243041 2.461816856 MS(ph)PFKR ddPTM_HeLa_A485_30min_R1 1 MSPFKR 6 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757 G3V3Z8 NUMB Protein numb homolog 1 0 MS(1)PFKR 98.629 0.0074164 310540000 328140 297640 205540 386430 411450 347360 464580 465400 244790 542410 TRUE FALSE FALSE 401133.6109 332446.4089 281577.7992 407539.6924 370484.5933 365547.2325 365318.6877 351259.9203 293917.1077 407197.1693 0.985109036 0.816426129 0.691502349 1.000841173 0.909840788 0.897715554 0.897154291 0.862628591 0.72180538 1 18.63536801 -4.245735092 23.08662279 0.86416955 0.9851093 0.118670673 0.096846046 2249.665165 3307037.39 0.024169314 0.51946439 5.68E-05 4.245735092 0.12093975 MS(ph)PKPELTEEQKQEIR ddPTM_HeLa_A485_30min_R1 1 MSPKPELTEEQKQEIR 16 2 P41208 P41208 CETN2 Centrin-2 1 0 MS(1)PKPELTEEQKQEIR 87.352 0.00053714 365510000 223170 99640 118080 550500 299940 130010 366610 313750 142880 747020 TRUE FALSE FALSE 272813.3966 111292.0312 161762.7057 580572.4211 270076.9204 136817.1226 288280.7786 236802.3206 171554.7054 560801.6619 0.486470378 0.198451679 0.288449048 1.035254459 0.481590799 0.243967042 0.51405122 0.42225681 0.305909766 1 19.0971311 -10.18031898 4.658452926 1.000082885 0.444506608 0.358440282 0.224002883 637200348.2 91.84695641 576720.6638 0.056552301 6.60E-11 10.18031898 -0.555576277 MS(ph)PKPELTEEQKQEIR ddPTM_HeLa_A486_30min_R1 1 MSPKPELTEEQKQEIR 16 2 P41208 P41208 CETN2 Centrin-2 1 0 MS(1)PKPELTEEQKQEIR 137.43 2.56E-06 377290000 240180 326700 135290 351310 372310 520260 791890 687910 262390 713540 TRUE FALSE FALSE 223344.6223 300811.1022 187677.9112 817867.4342 325611.4081 456075.6108 593750.7462 531287.91 285134.1765 534864.9396 0.417571999 0.562405721 0.350888416 1.529110199 0.608773139 0.852693039 1.110094722 0.993312275 0.533095657 1 19.02881511 -5.156954395 23.97470477 0.935731907 0.455491122 0.434654291 0.262618959 23.36126139 5350.968956 0.068833029 0.11922241 6.97E-06 5.156954395 -0.480240786 MS(ph)PMGTASGSNSPTSDSASVQR ddPTM_HeLa_A485_30min_R1 4 MSPMGTASGSNSPTSDSASVQR 22 0 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 1 0 MS(1)PMGTASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(0.999)PMGT(0.001)ASGSNSPTSDSASVQR ;;; 364.05 2.86E-142 1829330000 247600 320081 304319 251703 357261 324259 399495 392905 278468 351868 TRUE FALSE FALSE 302677.7658 357511.6886 416899.2619 265452.8975 321690.8404 341236.6998 314139.6297 296544.4327 334353.9733 264153.7833 1.145839223 1.353422556 1.578244524 1.004918023 1.217816518 1.291810761 1.189230099 1.122620426 1.265755005 1 18.01101855 -14 0.096215712 0.187260328 1.427273116 0.223956352 0.143105825 293.0603719 1.930807001 47.69819375 2.797424552 1.00E-14 14 1.240012788 MS(ph)PMGTASGSNSPTSDSASVQR ddPTM_HeLa_A486_30min_R1 1 MSPMGTASGSNSPTSDSASVQR 22 0 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 1 0 MS(0.973)PMGT(0.027)ASGSNSPTSDSASVQR 335.77 9.30E-115 665390000 103490 103320 90641 26135 106400 88159 113410 99063 93725 99792 TRUE FALSE FALSE 96235.88542 95132.54692 125739.6227 60843.60079 93054.31986 77282.83892 85033.61847 76508.51743 101849.1585 74803.43366 1.286516951 1.271767114 1.680933835 0.813379785 1.243984605 1.033145608 1.136760899 1.022794191 1.361557264 1 16.19081687 -5.261521983 25 1.094648021 1.398942067 0.424523923 0.173396475 7.331879225 2219198.568 0.045881523 0.073279824 5.48E-06 5.261521983 0.304294046 MS(ph)PPPSGFGER ddPTM_HeLa_A485_30min_R1 2 MSPPPSGFGER 11 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 MS(1)PPPSGFGER;MS(0.994)PPPS(0.006)GFGER ; 101.35 0.001206 668340000 624010 476200 605550 861900 919700 475160 549060 409060 655630 1020800 TRUE FALSE FALSE 762818.8717 531887.4476 829568.144 908983.4146 828131.4387 500038.6429 431748.8456 308737.3936 787208.9272 766333.3464 0.995413909 0.694067993 1.082516046 1.186146236 1.080641267 0.652508005 0.563395613 0.402876105 1.027240862 1 19.54761256 -6.266597242 24.812757 0.681520827 1.004393705 0.286459797 0.213242349 461.159001 2218474.62 0.075330342 0.068435097 5.41E-07 6.266597242 0.322872877 MS(ph)PPPSGFGER ddPTM_HeLa_A486_30min_R1 2 MSPPPSGFGER 11 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 MS(1)PPPSGFGER;MS(1)PPPSGFGER ; 114.24 0.00040167 987080000 395320 983660 646740 269630 993230 892830 868810 828760 772760 603010 TRUE FALSE FALSE 367610.1094 905711.1992 897175.0483 627712.2663 868649.8319 782681.7122 651424.5487 640069.4397 839743.459 452012.3711 0.813274443 2.003730998 1.984846225 1.388705944 1.921739066 1.731549317 1.44116531 1.416044075 1.857788664 1 18.78600273 -10.16984153 3.792216193 0.999573155 1.634244501 0.218282231 0.349386206 93284811.93 188541422.1 529106.0813 0.084123031 6.76E-11 10.16984153 0.634671346 MS(ph)PSKS(ph)PFLPSMK ddPTM_HeLa_A486_30min_R1 1 MSPSKSPFLPSMK 13 1 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 2 0 MS(0.997)PS(0.27)KS(0.717)PFLPS(0.016)MK 46.663 0.0094025 0 362440 325690 155350 196790 300880 346560 427210 389370 239820 484100 TRUE FALSE FALSE 337034.8276 299881.1383 215505.6804 458137.0652 263140.8248 303804.9508 320317.5394 300718.9509 260607.7907 362878.209 0.928782217 0.826396104 0.593878814 1.262509166 0.72514915 0.837209133 0.882713625 0.828704903 0.718168752 1 18.4691259 -7.291613246 19.91053541 0.830077491 0.862117572 0 0.172971023 578.7393627 381862.2319 0.091752264 0.044112059 5.11E-08 7.291613246 0.032040081 MS(ph)PSKSPFLPSMK ddPTM_HeLa_A485_30min_R1 2 MSPSKSPFLPSMK 13 1 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 MS(0.99)PS(0.01)KSPFLPSMK;MS(0.922)PS(0.078)KSPFLPSMK ; 195.45 2.02E-18 2655600000 2491400 2069000 1314470 3139100 2960000 2660800 4410200 4467000 1809070 4081800 TRUE FALSE FALSE 3045603.335 2310951.552 1800747.153 3310581.084 2665292.007 2800115.374 3467924.742 3371461.246 2172133.755 3064282.38 0.993904268 0.754157504 0.587657053 1.080377287 0.86979321 0.913791559 1.131724923 1.10024496 0.70885561 1 21.54711782 -5.277073956 24.97079279 0.976246551 0.776131375 0.26205781 0.148700341 1035.690699 1654152.787 0.042274067 0.06294172 5.28E-06 5.277073956 -0.200115176 MS(ph)PSKSPFLPSMK ddPTM_HeLa_A486_30min_R1 2 MSPSKSPFLPSMK 13 1 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 MS(0.979)PS(0.021)KSPFLPSMK;MS(0.879)PS(0.121)KSPFLPSMK ; 210.2 3.24E-22 2709800000 3615000 3074900 1389460 1615830 2965500 3512700 4461600 4501800 2206800 4698100 TRUE FALSE FALSE 3361607.168 2831233.725 1927496.123 3761733.9 2593539.338 3079338.789 3345260.49 3476838.414 2398087.201 3521665.181 0.954550474 0.803947445 0.547325207 1.068169092 0.73645256 0.874398511 0.949908727 0.987271145 0.68095264 1 21.74782632 -5.948213001 1.152623975 0.898686199 0.803144597 0.047189419 0.152659534 1.562327272 4.393441498 0.068830766 0.083662501 1.13E-06 5.948213001 -0.095541601 MS(ph)PTYS(ph)SDPESSDYGHVQS(ph)PPS(ph)CTSPHQMYVDHYR ddPTM_HeLa_A486_30min_R1 1 MSPTYSSDPESSDYGHVQSPPSCTSPHQMYVDHYR 35 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 4 0 MS(0.963)PT(0.041)Y(0.027)S(0.477)S(0.478)DPES(0.008)S(0.008)DY(0.055)GHVQS(0.931)PPS(0.338)CT(0.274)S(0.246)PHQMY(0.155)VDHYR 107.63 0.00010631 79992000 15562 19564 13974 5674.9 18381 12934 20628 19439 16915 17991 TRUE FALSE FALSE 14471.18416 18013.67739 19385.10704 13211.45399 16075.48358 11338.33458 15466.65622 15013.16405 18381.20582 13485.9365 1.073057415 1.335737966 1.437431285 0.97964676 1.192018336 0.840752482 1.146872983 1.11324594 1.362990685 1 13.71916809 -5.268268622 24.99530592 1.09164464 1.287441798 0.240855767 0.1555312 744.5942871 2725245.875 0.043624762 0.066338484 5.39E-06 5.268268622 0.195797158 MS(ph)PVDDT(ph)FIS(ph)GSLDK ddPTM_HeLa_A485_30min_R1 2 MSPVDDTFISGSLDK 15 0 C9J355;C9JBU3 C9J355 WDR82 3 0 MS(1)PVDDT(0.701)FIS(0.701)GS(0.598)LDK;MS(1)PVDDT(0.667)FIS(0.667)GS(0.667)LDK ; 53.169 0.021191 1126290000 425660 1200750 1667720 135526 1258540 772960 579020 732260 1040470 167006 TRUE FALSE FALSE 520346.5985 1341167.267 2284679.028 142929.4422 1133235.339 813430.9904 455307.6468 552672.0869 1249282.785 125374.4777 4.150339112 10.69729096 18.22283984 1.14002024 9.038804063 6.488010999 3.631581604 4.408170602 9.964410684 1 16.93588417 -5.282026999 24.99457834 5.399148753 10.99087219 0.293507039 4.195876983 1036.65981 1258563.43 1.172123406 1.740735037 5.22E-06 5.282026999 5.591723441 MS(ph)PVDDT(ph)FIS(ph)GSLDK ddPTM_HeLa_A486_30min_R1 2 MSPVDDTFISGSLDK 15 0 C9J355;C9JBU3 C9J355 WDR82 3 0 MS(1)PVDDT(0.699)FIS(0.699)GS(0.601)LDK;MS(0.999)PVDDT(0.667)FIS(0.667)GS(0.667)LDK ; 42.314 0.035391 254817000 128286 225765 413909 15341.2 381279 101776.7 77712.4 133032 249074 44417.3 TRUE FALSE FALSE 119293.8139 207874.5592 574185.6497 35715.0889 333455.4325 89220.52554 58267.93556 102743.5177 270663.9349 33294.91897 3.582943511 6.243431899 17.24544367 1.072688867 10.01520481 2.67970394 1.750054884 3.085861772 8.129286486 1 15.02301441 -6.275211667 24.41292859 3.360664578 7.724483509 0.194965101 4.369600837 1011.244308 1792538.423 1.524607683 1.352032298 5.31E-07 6.275211667 4.363818932 MS(ph)RRKAGS(ph)APR ddPTM_HeLa_A485_30min_R1 1 MSRRKAGSAPR 11 3 Q8WUU4 Q8WUU4 ZNF296 Zinc finger protein 296 2 0 MS(1)RRKAGS(1)APR 69.979 0.007988 131420000 13422 20445 18640 15687 20063 17811 22531 25042 17416 18764 TRUE FALSE FALSE 16407.67759 22835.8649 25535.71168 16543.94109 18065.45727 18743.55642 17717.06779 18900.41024 20911.23145 14086.48013 1.164781936 1.621119307 1.812781578 1.174455289 1.282467807 1.330606103 1.257735618 1.341741164 1.484489472 1 13.78202354 -5.287010844 24.96278901 1.284459876 1.541716882 0.287662636 0.190005235 938.8421018 916492.8592 0.053102944 0.078798199 5.16E-06 5.287010844 0.257257006 MS(ph)S(ph)KYPR ddPTM_HeLa_A485_30min_R1 2 MSSKYPR 7 1 E9PKB3;Q5VSJ7;H3BT10;E7EVW1;E7EU00;Q5VSJ8;A0A3B3IU43;E7EQ47;P18577-5;P18577-12;P18577-14;P18577;Q02161;Q02161-5;P18577-6;Q02161-6;P18577-9;P18577-3;P18577-4;P18577-2;P18577-11;P18577-13;P18577-7;Q02161-2;Q02161-3;P18577-10;P18577-8;Q02161-4 E9PKB3 RHCE;RHD Blood group Rh(CE) polypeptide;Blood group Rh(D) polypeptide 2 0 MS(0.999)S(0.999)KY(0.002)PR;MS(0.999)S(0.999)KY(0.001)PR ; 46.129 0.027015 578380000 73229 251000 384900 47089 195233 182728 101315 141198 229480 57433 TRUE FALSE FALSE 89518.53841 280352.2666 527290.527 49661.35283 175794.917 192295.3555 79668.22258 106568.9691 275534.5311 43116.01008 2.076225009 6.502277602 12.22957612 1.15180771 4.077253825 4.459952468 1.847764263 2.471679752 6.390538702 1 15.39593606 -5.31107836 24.99999779 3.168901859 6.892686675 0.293853361 2.751515476 469.6094321 236511.4013 0.775985373 1.150974112 4.89E-06 5.31107836 3.723784817 MS(ph)S(ph)KYPR ddPTM_HeLa_A486_30min_R1 2 MSSKYPR 7 1 E9PKB3;Q5VSJ7;H3BT10;E7EVW1;E7EU00;Q5VSJ8;A0A3B3IU43;E7EQ47;P18577-5;P18577-12;P18577-14;P18577;Q02161;Q02161-5;P18577-6;Q02161-6;P18577-9;P18577-3;P18577-4;P18577-2;P18577-11;P18577-13;P18577-7;Q02161-2;Q02161-3;P18577-10;P18577-8;Q02161-4 E9PKB3 RHCE;RHD Blood group Rh(CE) polypeptide;Blood group Rh(D) polypeptide 2 0 MS(1)S(1)KYPR;MS(1)S(1)KYPR ; 52.482 0.021424 676690000 59529 108595 193393 17869.6 165768 55492 64248 67801 91732 40283 TRUE FALSE FALSE 55356.32451 99989.5367 268279.9488 41601.33188 144975.8317 48645.96124 48172.47085 52364.19239 99683.40362 30195.8746 1.833241303 3.311364152 8.884655682 1.377715745 4.801180083 1.611013487 1.595332856 1.734150545 3.30122591 1 14.88206384 -6.268030805 24.44762159 1.878415623 4.12212259 0.232673155 1.988450982 608.0451444 2255234.153 0.694945514 0.627360921 5.39E-07 6.268030805 2.243706967 MS(ph)SHTETSSFLQTLTGR ddPTM_HeLa_A485_30min_R1 1 MSSHTETSSFLQTLTGR 17 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MS(0.776)S(0.169)HT(0.053)ET(0.001)SSFLQTLTGR 94.01 0.00053096 56527000 51290 47050 49023 54403 65154 43640 59151 47931 48878 72045 TRUE FALSE FALSE 62699.28355 52552.08822 67158.64772 57374.89813 58667.03899 45924.92292 46512.90563 36175.8471 58687.36626 54085.50739 1.159262186 0.971648243 1.241712447 1.060818339 1.084709044 0.849116984 0.859988338 0.668863968 1.085084879 1 15.72295444 -6.234059902 6.176995645 0.8696274 1.102658311 0.426920319 0.120813366 0.163606996 22.11099222 0.038928791 0.037999564 5.83E-07 6.234059902 0.233030911 MS(ph)SHTETSSFLQTLTGR ddPTM_HeLa_A486_30min_R1 4 MSSHTETSSFLQTLTGR 17 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MS(0.991)S(0.009)HTETSSFLQTLTGR;MS(0.922)S(0.056)HT(0.022)ETSSFLQTLTGR;MS(0.989)S(0.011)HTETSSFLQTLTGR;MS(0.868)S(0.131)HT(0.001)ETSSFLQTLTGR ;;; 298.96 1.10E-68 410586000 243663 262322 194024 68980 239730 218923 257144 242169 197934 204392 TRUE FALSE FALSE 226583.482 241534.6494 269155.2889 160588.9261 209660.828 191914.5061 192803.8514 187032.4052 215091.0785 153210.9128 1.478899106 1.576484631 1.75676317 1.048155925 1.368445786 1.252616426 1.258421139 1.220751197 1.40388876 1 17.22515953 -1 0.139022717 0.995617375 3.114496135 0.422414658 0.167017821 75.09806289 0.698011815 0.748030273 31.58065238 0.1 1 2.118878761 MS(ph)SLKLK ddPTM_HeLa_A486_30min_R1 1 MSSLKLK 7 1 A0A0A0MQX1;Q9HD67;E9PEW5;Q9HD67-3 A0A0A0MQX1 MYO10 Unconventional myosin-X 1 0 MS(0.543)S(0.457)LKLK 50.123 0.02703 180670000 303370 208980 188030 178520 428090 301110 474600 508270 195720 400070 TRUE FALSE FALSE 282105.3296 192419.6637 260840.2516 415603.5819 374394.9604 263962.1097 355850.0602 392548.0165 212685.1672 299889.868 0.940696435 0.641634427 0.86978681 1.385854029 1.248441513 0.880196825 1.186602477 1.308973921 0.709210913 1 18.19407325 -5.019018444 23.70554579 1.116834451 0.782301674 0.296374985 0.203016719 407.5924775 508046.7783 0.053859228 0.095471236 9.57E-06 5.019018444 -0.334532777 MS(ph)T(ph)GTQPKTK ddPTM_HeLa_A485_30min_R1 1 MSTGTQPKTK 10 1 Q9Y3M8-4 Q9Y3M8-4 STARD13 StAR-related lipid transfer protein 13 2 0 MS(0.97)T(0.974)GT(0.036)QPKT(0.02)K 50.353 0.012777 0 80766 82210 60975 96703 104640 89271 126300 141320 75026 141580 TRUE FALSE FALSE 98732.11806 91823.74437 83532.18988 101985.64 94221.67419 93945.09152 99314.97322 106661.0484 90083.03002 106286.7116 0.928922502 0.863924972 0.785913767 0.959533309 0.886485928 0.883883696 0.934406303 1.003521953 0.847547437 1 16.69760171 -7.802010781 0.24211622 1.017327797 0.85294587 0.237599306 0.057193888 3.416956308 0.786987405 0.21728189 0.158654824 1.58E-08 7.802010781 -0.164381927 MS(ph)TVSELR ddPTM_HeLa_A485_30min_R1 1 MSTVSELR 8 0 Q99661-2;Q99661;Q5JR89;Q5JR91 Q99661-2 KIF2C Kinesin-like protein KIF2C;Kinesin-like protein 1 0 MS(0.827)T(0.171)VS(0.001)ELR 125.66 0.00060846 149030000 138610 135930 117210 156390 190480 135890 196650 188900 106860 176690 TRUE FALSE FALSE 169443.3163 151825.8311 160570.8565 164933.1897 171515.1424 143004.9903 154634.121 142571.9788 128305.8218 132644.4347 1.277424994 1.144607622 1.210535948 1.243423367 1.293044391 1.078107729 1.165779185 1.074843276 0.967291406 1 17.01720462 -7.170381093 1.000064327 0.980583736 1.222628177 0.727437706 0.056196928 0.297255623 0.533071698 0.048958925 0.020738979 6.75E-08 7.170381093 0.242044442 MSATFIGNSTAIQELFK ddPTM_HeLa_A485_30min_R1 1 MSATFIGNSTAIQELFK 17 0 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 0 348.58 2.97E-118 17575000 23743 18805 17554 30436 28980 24436 34646 33075 18857 41211 FALSE FALSE TRUE 29024.54844 21004.08117 24047.95508 32098.64161 26094.64945 25715.43117 27243.59907 24963.30439 22641.42693 30937.85613 0.938156423 0.67891198 0.777298691 1.037519907 0.843453707 0.831196288 0.880591045 0.806885399 0.731835678 1 14.91708561 MSATFIGNSTAIQELFK ddPTM_HeLa_A486_30min_R1 1 MSATFIGNSTAIQELFK 17 0 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 0 214.53 2.10E-24 19121000 10289 10527 7997.4 4839.7 12634 12231 14110 14831 13164 16110 FALSE FALSE TRUE 9567.794232 9692.802181 11094.20746 11267.06618 11049.32591 10722.06358 10579.52876 11454.30506 14305.06612 12075.95114 0.792301502 0.802653312 0.918702579 0.933016874 0.914985974 0.887885637 0.876082442 0.948521978 1.184591255 1 13.5598492 -7.576584153 5.420765172 1.090254128 0.880204216 0.668030737 0.06045932 0.119215356 7.45837173 0.043826775 0.016006569 2.65E-08 7.576584153 -0.210049911 MSATFIGNSTAIQELFKR ddPTM_HeLa_A485_30min_R1 2 MSATFIGNSTAIQELFKR 18 1 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 0 ; ; 211.09 1.18E-23 71027000 21110.5 32387.7 23580.3 15735.7 36366 38452.7 43490 67746 21639.9 26158.8 FALSE FALSE TRUE 25806.45789 36175.15978 32303.63423 16595.30145 32745.27335 40466.02391 34198.00622 51131.18728 25982.82944 19637.89258 1.314115443 1.842110076 1.644964402 0.845065293 1.667453533 2.060609292 1.741429539 2.603700325 1.323096627 1 14.2613525 -5.995482871 24.9789661 1.847761162 1.433647455 0.083027292 0.468427161 248.2222989 1372609.84 0.141130528 0.159421074 1.01E-06 5.995482871 -0.414113707 MSAYAFFVQTCR ddPTM_HeLa_A485_30min_R1 1 MSAYAFFVQTCR 12 0 E9PES6;E7ES08;E7EQU1;O15347 E9PES6 HMGB3 High mobility group protein B3 0 0 93.959 0.02069 13800000 5596.2 7221.1 8859.2 6387.5 11589 7201.8 9043.2 9623.8 6655.2 11533 FALSE FALSE TRUE 6841.055383 8065.54483 12136.58674 6736.432951 10435.15847 7578.875112 7111.046444 7263.54796 7990.837595 8658.035349 0.790139461 0.931567556 1.401771447 0.778055607 1.205257088 0.875357377 0.821323332 0.838937203 0.922938897 1 13.07982398 -6.409490839 24.34884343 0.877214487 1.02562208 0.112928096 0.17919403 36.95624777 7877.981349 0.062000402 0.054679177 3.90E-07 6.409490839 0.148407593 MSAYAFFVQTCR ddPTM_HeLa_A486_30min_R1 1 MSAYAFFVQTCR 12 0 E9PES6;E7ES08;E7EQU1;O15347 E9PES6 HMGB3 High mobility group protein B3 0 0 87.184 0.019299 0 5222.1 7360.6 7123.5 2842.7 8659.2 6697.5 7589 8305.5 7582.9 6966.4 FALSE FALSE TRUE 4856.057757 6777.319249 9881.909974 6617.949262 7573.082392 5871.230545 5690.151932 6414.518958 8240.191877 5221.968096 0.929928653 1.297847693 1.892372721 1.267328551 1.450235285 1.124332902 1.089656587 1.228371916 1.577985871 1 12.35037793 -6.256649295 24.74243847 1.211191897 1.387260426 0.085351844 0.26313214 956.2400673 4939312.488 0.091136143 0.088342391 5.54E-07 6.256649295 0.176068529 MSCFSRPS(ph)MS(ph)PTPLDR ddPTM_HeLa_A485_30min_R1 13 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 MS(0.001)CFS(0.001)RPS(0.998)MS(0.901)PT(0.099)PLDR;MS(0.007)CFS(0.062)RPS(0.931)MS(0.633)PT(0.367)PLDR;MSCFSRPS(1)MS(0.975)PT(0.025)PLDR;MSCFSRPS(0.999)MS(0.735)PT(0.266)PLDR;MSCFS(0.003)RPS(0.995)MS(0.628)PT(0.373)PLDR;MSCFS(0.002)RPS(0.998)MS(0.967)PT(0.033)PLDR;MS(0.037)CFS(0.049)RPS(0.913)MS(0.84)PT(0.161)PLDR;MS(0.038)CFS(0.048)RPS(0.911)MS(0.981)PT(0.021)PLDR;MS(0.031)CFS(0.038)RPS(0.931)MS(0.526)PT(0.473)PLDR;MS(0.048)CFS(0.08)RPS(0.874)MS(0.918)PT(0.08)PLDR;MS(0.02)CFS(0.026)RPS(0.955)MS(0.808)PT(0.191)PLDR;MS(0.009)CFS(0.012)RPS(0.979)MS(0.914)PT(0.087)PLDR;MS(0.028)CFS(0.038)RPS(0.935)MS(0.973)PT(0.027)PLDR ;;;;;;;;;;;; 136.02 8.51E-06 10907890000 3317409 4634860 4659030 3751821 5854860 4530140 5672930 5969290 4358680 4848750 TRUE FALSE FALSE 4055355.187 5176866.559 6382599.075 3956773.481 5271929.581 4767331.125 4460862.162 4505312.268 5233427.096 3640045.86 1.114094532 1.42219817 1.753439193 1.087011987 1.448314055 1.309689853 1.225496143 1.237707557 1.437736583 1 21.7955252 -12.83518932 0.232155121 6.00E-11 1.382940215 0.222895364 0.185086822 134.8056667 2.201495418 64.01880991 0.321566519 1.46E-13 12.83518932 1.382940215 MSCFSRPS(ph)MS(ph)PTPLDR ddPTM_HeLa_A486_30min_R1 8 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 MSCFSRPS(1)MS(0.962)PT(0.038)PLDR;MSCFS(0.018)RPS(0.982)MS(0.862)PT(0.138)PLDR;MSCFSRPS(1)MS(0.99)PT(0.01)PLDR;MS(0.001)CFS(0.018)RPS(0.981)MS(0.673)PT(0.327)PLDR;MS(0.015)CFS(0.02)RPS(0.963)MS(0.94)PT(0.061)PLDR;MS(0.005)CFS(0.007)RPS(0.986)MS(0.814)PT(0.188)PLDR;MS(0.009)CFS(0.013)RPS(0.975)MS(0.874)PT(0.129)PLDR;MSCFS(0.001)RPS(0.999)MS(0.615)PT(0.385)PLDR ;;;;;;; 299.93 4.29E-67 6844430000 3442220 3578590 3103460 1201916 4317130 3393290 3855820 4126930 3136130 3840450 TRUE FALSE FALSE 3200938.154 3295009.495 4305202.826 2798121.189 3775635.3 2974660.38 2891053.053 3187318.129 3407972.273 2878776.323 1.111909296 1.14458684 1.495497511 0.971982841 1.311541737 1.033307227 1.004264566 1.10717811 1.1838267 1 21.45702427 -6.280943598 24.75299138 1.068573274 1.206590112 0.210585996 0.136816322 1231.305561 1562656.405 0.047315039 0.041785699 5.24E-07 6.280943598 0.138016838 MSCFSRPS(ph)MSPT(ph)PLDR ddPTM_HeLa_A485_30min_R1 2 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 MSCFS(0.31)RPS(0.69)MS(0.333)PT(0.667)PLDR;MS(0.019)CFS(0.037)RPS(0.936)MS(0.236)PT(0.773)PLDR ; 145.46 1.27E-06 878330000 467570 743120 736100 539260 877570 658960 837460 911000 641320 701790 TRUE FALSE FALSE 571579.3334 830021.4197 1008414.022 568718.4083 790196.0495 693462.1267 658529.8296 687575.8216 770027.0415 526846.6685 1.084906421 1.575451587 1.91405599 1.07947614 1.49985963 1.316250378 1.249945893 1.305077668 1.46157713 1 19.00702362 -5.292737191 24.99962099 1.296153955 1.529869798 0.189160842 0.235330677 1145.468522 914958.5304 0.065490176 0.097148704 5.10E-06 5.292737191 0.233715843 MSCFSRPS(ph)MSPT(ph)PLDR ddPTM_HeLa_A486_30min_R1 5 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 MS(0.001)CFS(0.069)RPS(0.93)MS(0.322)PT(0.678)PLDR;MSCFSRPS(1)MS(0.023)PT(0.977)PLDR;MSCFS(0.013)RPS(0.986)MS(0.012)PT(0.989)PLDR;MS(0.003)CFS(0.019)RPS(0.974)MS(0.289)PT(0.715)PLDR;MS(0.042)CFS(0.042)RPS(0.883)MS(0.228)PT(0.804)PLDR ;;;; 160.3 7.08E-12 2709632000 1367682 1471800 1256001 484117 1767280 1325457 1543350 1568880 1269609 1551670 TRUE FALSE FALSE 1271814.555 1355169.208 1742358.224 1127048.842 1545611.263 1161935.592 1157187.506 1211680.272 1379659.73 1163121.732 1.093449223 1.165113823 1.498001607 0.968986144 1.328847377 0.998980209 0.994898018 1.041748459 1.186169678 1 20.14957067 -6.27787469 24.81211109 1.043877217 1.210849788 0.259956565 0.140479144 1069.919269 1615234.219 0.048444908 0.04285177 5.27E-07 6.27787469 0.166972572 MSCFSRPSMS(ph)PTPLDR ddPTM_HeLa_A485_30min_R1 12 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MSCFSRPSMS(0.94)PT(0.06)PLDR;MSCFS(0.002)RPS(0.051)MS(0.948)PTPLDR;MSCFSRPSMS(0.967)PT(0.033)PLDR;MSCFSRPS(0.002)MS(0.87)PT(0.128)PLDR;MSCFSRPSMS(0.968)PT(0.032)PLDR;MSCFSRPS(0.006)MS(0.978)PT(0.016)PLDR;MSCFSRPSMS(0.948)PT(0.052)PLDR;MSCFSRPS(0.001)MS(0.521)PT(0.478)PLDR;MS(0.002)CFS(0.002)RPS(0.254)MS(0.734)PT(0.009)PLDR;MSCFSRPS(0.029)MS(0.967)PT(0.005)PLDR;MS(0.005)CFS(0.005)RPS(0.185)MS(0.766)PT(0.038)PLDR;MS(0.005)CFS(0.005)RPS(0.258)MS(0.707)PT(0.026)PLDR ;;;;;;;;;;; 189.07 2.92E-18 42314050000 4856080 6860190 6539950 4743770 8055860 6305330 7864080 8788400 5767310 6570990 TRUE FALSE FALSE 5936298.243 7662429.545 8959349.655 5002910.143 7253790.293 6635467.329 6183855.064 6633031.12 6924756.216 4932963.123 1.203394004 1.553311743 1.816220683 1.014179514 1.470473245 1.345128103 1.253578206 1.34463424 1.403772143 1 22.23402307 -12.98544053 0.168027486 6.29E-10 1.48417596 0.241665147 0.202607076 131.0079653 1.677138118 45.36570175 0.792266386 1.03E-13 12.98544053 1.48417596 MSCFSRPSMS(ph)PTPLDR ddPTM_HeLa_A486_30min_R1 12 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MSCFSRPS(0.002)MS(0.499)PT(0.499)PLDR;MSCFSRPS(0.001)MS(0.994)PT(0.005)PLDR;MSCFSRPS(0.05)MS(0.475)PT(0.475)PLDR;MSCFSRPS(0.001)MS(0.994)PT(0.005)PLDR;MSCFSRPSMS(0.876)PT(0.124)PLDR;MSCFSRPSMS(0.935)PT(0.065)PLDR;MSCFSRPSMS(0.971)PT(0.029)PLDR;MS(0.001)CFS(0.001)RPS(0.241)MS(0.576)PT(0.181)PLDR;MSCFS(0.001)RPS(0.08)MS(0.697)PT(0.223)PLDR;MSCFSRPS(0.027)MS(0.909)PT(0.064)PLDR;MSCFSRPS(0.158)MS(0.807)PT(0.035)PLDR;MSCFSRPS(0.012)MS(0.971)PT(0.017)PLDR ;;;;;;;;;;; 187.57 3.48E-18 36449610000 6778440 6536830 5600040 2077822 7833420 5706560 6897410 6921480 5224632 6581960 TRUE FALSE FALSE 6303306.36 6018827.784 7768525.462 4837274.623 6850879.42 5002542.647 5171605.065 5345610.099 5677507.308 4933794.375 1.27757784 1.219918652 1.574553958 0.980437014 1.388562007 1.013934158 1.048200365 1.08346836 1.150738535 1 22.23426616 -5.985364383 1.184248619 1.064482762 1.314568748 0.329647903 0.15035673 0.553658237 1.633563502 0.065621864 0.076479168 1.03E-06 5.985364383 0.250085986 MSCFSRPSMSPT(ph)PLDR ddPTM_HeLa_A486_30min_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MSCFSRPS(0.001)MS(0.363)PT(0.636)PLDR 130.73 0.0002974 5736300000 1681700 1635500 1381000 618080 1886700 1402100 1794300 1727000 1275900 1685400 TRUE FALSE FALSE 1563821.514 1505897.024 1915760.184 1438921.476 1650052.493 1229123.158 1345347.162 1333799.8 1386496.039 1263364.87 1.237822542 1.191973166 1.51639501 1.138959544 1.306077549 0.972896419 1.064892015 1.055751851 1.097462873 1 20.26883993 -6.254967987 24.9665249 1.043353332 1.278945073 0.598968342 0.098162594 366.0533045 1412228.946 0.032270207 0.031533747 5.56E-07 6.254967987 0.235591741 MSCSWPGKDEK ddPTM_HeLa_A485_30min_R1 1 MSCSWPGKDEK 11 1 Q8IWR1 Q8IWR1 TRIM59 Tripartite motif-containing protein 59 0 0 78.653 0.027455 656800000 223560 308020 280290 61177 362250 316820 251430 416810 327130 104410 FALSE FALSE TRUE 273290.1507 344040.2596 383980.9348 64518.9446 326183.1181 333408.2053 197709.9265 314586.694 392781.9904 78382.50852 3.486621644 4.389247883 4.898808957 0.823129367 4.161427392 4.253604683 2.522373043 4.013480812 5.01109237 1 16.25824412 MSDT(ph)GSPGMQR ddPTM_HeLa_A485_30min_R1 4 MSDTGSPGMQR 11 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 MSDT(0.612)GS(0.388)PGMQR;MSDT(0.855)GS(0.145)PGMQR;MSDT(0.839)GS(0.161)PGMQR;MS(0.007)DT(0.637)GS(0.356)PGMQR ;;; 178.95 1.07E-09 3307560000 2733080 3693710 3375770 3041650 4541190 3511330 4098870 4192810 3309250 4037890 TRUE FALSE FALSE 3341044.217 4125657.253 4624607.801 3207807.638 4089053.179 3695177.809 3223112.94 3164516.773 3973386.121 3031318.335 1.102175307 1.361010886 1.525609418 1.058221963 1.348935587 1.21900025 1.063271021 1.043940762 1.310778243 1 21.53151393 -6.576505533 4.871609525 1.109529328 1.285364584 0.241992121 0.145521904 0.299977959 15.13295892 0.056290286 0.0435926 2.65E-07 6.576505533 0.175835256 MSDT(ph)GSPGMQR ddPTM_HeLa_A486_30min_R1 4 MSDTGSPGMQR 11 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 MSDT(0.907)GS(0.093)PGMQR;MSDT(0.652)GS(0.348)PGMQR;MS(0.004)DT(0.498)GS(0.498)PGMQR;MS(0.01)DT(0.655)GS(0.335)PGMQR ;;; 176.32 4.45E-08 2550900000 3217470 3448390 3129690 1008840 4033980 3335280 3491720 3608800 3152700 3348840 TRUE FALSE FALSE 2991941.968 3175127.018 4341589.784 2348630.504 3528000.613 2923807.064 2618054.724 2787155.02 3425978.574 2510268.667 1.191881175 1.264855455 1.729531919 0.935609218 1.405427499 1.1647387 1.042938056 1.110301481 1.364785618 1 21.25941035 -5.283259917 24.95237703 1.158117002 1.382366247 0.261165036 0.190944738 1128.744992 1290748.257 0.053053629 0.078766919 5.21E-06 5.283259917 0.224249245 MSDTGS(ph)PGMQR ddPTM_HeLa_A485_30min_R1 1 MSDTGSPGMQR 11 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 MSDT(0.043)GS(0.957)PGMQR 158.61 1.56E-07 440920000 810410 1095100 1125700 849010 1356600 1076300 1268400 1314400 1063600 1182800 TRUE FALSE FALSE 990682.9086 1223162.419 1542143.274 895389.2665 1221532.141 1132653.404 997395.9781 992041.3391 1277054.764 887949.7278 1.115697069 1.377513141 1.736746153 1.008378333 1.375677138 1.275582804 1.12325726 1.11722692 1.438206155 1 19.76011847 -5.289113976 24.99959913 1.204447109 1.406738476 0.20802365 0.194403819 1194.930703 1079427.451 0.054263621 0.080504815 5.14E-06 5.289113976 0.202291367 MSDTGS(ph)PGMQR ddPTM_HeLa_A486_30min_R1 1 MSDTGSPGMQR 11 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 MSDT(0.042)GS(0.958)PGMQR 181.46 1.90E-10 668670000 1048100 1090700 985480 380370 1271400 1043000 1110200 1251000 976550 1123900 TRUE FALSE FALSE 974633.6024 1004268.96 1367084.248 885520.5828 1111929.157 914325.2644 832416.2175 966174.6091 1061198.14 842468.1246 1.156878906 1.192055735 1.622713321 1.051102774 1.319847154 1.085293601 0.988068502 1.146838178 1.25963002 1 19.68426258 -6.268730355 24.26815526 1.098399837 1.271870305 0.23348222 0.156234774 607.1099883 2020771.66 0.054704257 0.049241951 5.39E-07 6.268730355 0.173470468 MSEMIFR ddPTM_HeLa_A486_30min_R1 2 MSEMIFR 7 0 Q6ZWL3-2;Q6ZWL3 Q6ZWL3-2 CYP4V2 Cytochrome P450 4V2 0 0 ; ; 86.113 0.011712 22758000 1224.13 2133.91 2715.37 1272.76 4328.2 4867.9 2565.36 4518.1 2051.68 3642.4 FALSE FALSE TRUE 1138.324808 1964.8112 3766.833984 2963.049602 3785.316797 4267.347991 1923.479794 3489.427259 2229.521274 2730.319332 0.416920027 0.719626887 1.379631291 1.085239213 1.38640076 1.562948312 0.704488948 1.27802899 0.816578943 1 11.41485398 -4.575704739 4.522500738 1.164961123 0.47506225 0.475952222 0.253081664 0.150322937 6.341898125 0.064609514 0.19743581 2.66E-05 4.575704739 -0.689898873 MSEPLQSVVDHMATHLGVS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 MSEPLQSVVDHMATHLGVSPSR 22 0 Q8NCF5;Q8NCF5-2 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 MSEPLQSVVDHMATHLGVS(0.893)PS(0.107)R;MSEPLQSVVDHMATHLGVS(0.999)PS(0.001)R ; 262.74 1.48E-59 284960000 190321 254640 265440 179489 342970 281010 331870 390670 232539 289730 TRUE FALSE FALSE 232657.2499 284417.9329 363637.3019 189294.0296 308822.7026 295723.2491 260963.2634 294857.57 279207.4443 217505.6431 1.069660752 1.30763473 1.671852264 0.870294797 1.419837657 1.359611847 1.199799967 1.355631816 1.283679082 1 17.73069331 -10.59659051 2.41454807 0.969411038 1.288196243 0.149632815 0.201191622 7372027.946 6081373.924 1426668.11 0.050496571 2.53E-11 10.59659051 0.318785205 MSEPLQSVVDHMATHLGVS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 MSEPLQSVVDHMATHLGVSPSR 22 0 Q8NCF5;Q8NCF5-2 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 MSEPLQSVVDHMATHLGVS(0.999)PS(0.001)R;MSEPLQSVVDHMAT(0.002)HLGVS(0.742)PS(0.256)R;MSEPLQSVVDHMATHLGVS(0.972)PS(0.028)R;MSEPLQSVVDHMAT(0.003)HLGVS(0.74)PS(0.257)R ;;; 210 2.15E-27 390240000 316657 352105 301119 117822 447501 405693 447451 419085 343288 401361 TRUE FALSE FALSE 294460.9795 324202.9175 417720.341 274295.5704 391371.2518 355642.7224 335494.0271 323668.4941 373044.4802 300857.5932 0.978738733 1.077595928 1.388432104 0.911712307 1.300852166 1.182096548 1.115125677 1.075819595 1.239937062 1 18.19872124 -4.523949181 24.99996868 1.156452017 1.003452953 0.139855166 0.132472097 53.06754457 1239424.832 0.031548802 0.084981812 2.99E-05 4.523949181 -0.152999064 MSEQQMDLK ddPTM_HeLa_A486_30min_R1 1 MSEQQMDLK 9 0 Q8WTQ4 Q8WTQ4 C16orf78 Uncharacterized protein C16orf78 0 0 40.432 0.011179 0 9735.8 11004 11861 6765.5 13169 11559 17265 18398 10396 14897 FALSE FALSE TRUE 9053.370696 10132.00296 16453.89685 15750.42591 11517.22122 10132.9681 12945.11439 14209.17703 11297.13365 11166.69424 0.810747613 0.907341309 1.473479662 1.41048242 1.031390399 0.907427739 1.159261113 1.272460473 1.011681113 1 13.44691454 MSES(ph)PTPCSGSSFEETEALVNTAAK ddPTM_HeLa_A485_30min_R1 1 MSESPTPCSGSSFEETEALVNTAAK 25 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 MS(0.085)ES(0.405)PT(0.405)PCS(0.026)GS(0.026)S(0.026)FEET(0.026)EALVNTAAK 57.293 0.020622 72995000 15583 19860 22172 19128 30679 22448 31488 35275 21757 34285 TRUE FALSE FALSE 19049.38459 22182.45424 30374.34545 20172.91421 27624.49104 23623.34257 24760.33157 26623.75094 26123.43033 25738.38047 0.740115899 0.861843435 1.180118753 0.783767814 1.07328008 0.917825525 0.962000371 1.034398842 1.014960143 1 14.65163366 -4.528825967 24.99901675 0.99040966 0.770547716 0.413006868 0.097564998 114.5223903 481394.1675 0.023110413 0.061522451 2.96E-05 4.528825967 -0.219861944 MSESPT(ph)PCSGSSFEETEALVNTAAK ddPTM_HeLa_A486_30min_R1 2 MSESPTPCSGSSFEETEALVNTAAK 25 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 MS(0.049)ES(0.412)PT(0.536)PCS(0.001)GS(0.001)S(0.001)FEETEALVNTAAK;MS(0.064)ES(0.409)PT(0.526)PCSGSSFEETEALVNTAAK ; 182.39 3.81E-20 210656000 89868 90046 67051 29491 100882 107536 105173 112515 75360 104953 TRUE FALSE FALSE 83568.71728 82910.42702 93014.94289 68656.53839 88228.43887 94269.30167 78857.60299 86897.79069 81892.26548 78672.08567 1.06224103 1.053873509 1.182311897 0.872692491 1.121470699 1.198256038 1.002358109 1.104556844 1.040931669 1 16.26356421 -8.011156042 8.162386411 1.000002362 1.074097263 0.067522901 0.087497579 0.414571427 232.9085424 0.082515322 0.021337995 9.75E-09 8.011156042 0.0740949 MSFS(ph)SLKR ddPTM_HeLa_A485_30min_R1 1 MSFSSLKR 8 1 P35240-4;P35240-6;P35240-5;P35240-8;P35240-3;P35240;P35240-2;A0A5F9ZHD8;P35240-9;P35240-10;P35240-7 P35240-4 NF2 Merlin 1 0 MS(0.015)FS(0.493)S(0.493)LKR 69.276 0.010187 192850000 83036 79758 56887 88368 113140 102530 133450 131510 84100 135460 TRUE FALSE FALSE 101507.0717 89085.0043 77931.86857 93195.32008 101875.3843 107898.3123 104937.3173 99256.9663 100978.0986 101692.315 0.998178395 0.876024942 0.766349636 0.916444081 1.001800228 1.061027201 1.031910006 0.976051793 0.992976693 1 16.63385113 -5.691765564 3.888113053 1.013739331 0.874882629 0.529787069 0.056518448 0.174909149 5.212228224 0.018192283 0.023401811 2.03E-06 5.691765564 -0.138856703 MSFS(ph)SLKR ddPTM_HeLa_A486_30min_R1 1 MSFSSLKR 8 1 P35240-4;P35240-6;P35240-5;P35240-8;P35240-3;P35240;P35240-2;A0A5F9ZHD8;P35240-9;P35240-10;P35240-7 P35240-4 NF2 Merlin 1 0 MS(0.004)FS(0.498)S(0.498)LKR 71.349 0.0080826 0 220550 211130 128830 87699 223970 256120 323740 325760 221730 314300 TRUE FALSE FALSE 205090.5839 194399.2899 178716.4262 204167.7041 195877.5942 224522.5184 242736.8278 251591.5593 240949.7349 235597.2343 0.870513546 0.825134007 0.75856759 0.866596353 0.831408717 0.952993014 1.030304233 1.067888424 1.02271886 1 17.84596308 -6.44085296 2.118232003 1.037729497 0.824884174 0.890732131 0.03309182 0.095783532 0.85134558 0.014215338 0.01158075 3.62E-07 6.44085296 -0.212845323 MSFSS(ph)LKR ddPTM_HeLa_A486_30min_R1 1 MSFSSLKR 8 1 P35240-4;P35240-6;P35240-5;P35240-8;P35240-3;P35240;P35240-2;A0A5F9ZHD8;P35240-9;P35240-10;P35240-7 P35240-4 NF2 Merlin 1 0 MSFS(0.113)S(0.887)LKR 70.552 0.0096157 254830000 105740 109510 55330 47342 103360 120320 137660 145180 98268 143370 TRUE FALSE FALSE 98328.17204 100832.0288 76755.25779 110214.5685 90395.62501 105476.1417 103216.012 112125.6833 106785.9494 107469.2188 0.914942652 0.938241013 0.714206902 1.025545451 0.841130381 0.981454438 0.960423953 1.043328355 0.993642185 1 16.71356398 -6.502883563 1.264216935 1.012917028 0.882734332 0.324812127 0.077073305 0.524152034 1.708645182 0.041340876 0.030136251 3.14E-07 6.502883563 -0.130182696 MSKPGS(ph)PGSVIPAQAHGK ddPTM_HeLa_A485_30min_R1 1 MSKPGSPGSVIPAQAHGK 18 1 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-6;Q8IZD2-2 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 MS(0.228)KPGS(0.69)PGS(0.082)VIPAQAHGK 153.19 1.35E-08 1121100000 1000500 1010100 648420 1189900 1398600 1382100 1983100 2215900 1004700 1722100 TRUE FALSE FALSE 1223057.773 1128222.408 888297.541 1254901.224 1259350.473 1454464.619 1559394.485 1672447.051 1206334.074 1292812.163 0.946044451 0.872688578 0.687104876 0.970675602 0.97411713 1.125039399 1.206203445 1.293650461 0.933108544 1 20.30208125 -5.918609223 1.815183965 1.135844857 0.844708455 0.492179708 0.11653053 0.267839101 1.804495319 0.042989871 0.050301354 1.21E-06 5.918609223 -0.291136402 MSKPGS(ph)PGSVIPAQAHGK ddPTM_HeLa_A486_30min_R1 1 MSKPGSPGSVIPAQAHGK 18 1 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-6;Q8IZD2-2 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 MS(0.014)KPGS(0.802)PGS(0.184)VIPAQAHGK 167.59 2.13E-12 569000000 1862200 1632500 898000 777780 1810400 1800700 2383500 2266000 1320400 2432400 TRUE FALSE FALSE 1731669.396 1503134.755 1245729.649 1810711.147 1583322.751 1578547.942 1787123.09 1750081.266 1434853.335 1823311.208 0.949738799 0.824398352 0.68322382 0.993089462 0.868377677 0.86575892 0.980152528 0.959836839 0.786949221 1 20.79812939 -5.286883489 24.99168927 0.918192488 0.819648053 0.225800551 0.087114105 1149.808441 1129361.195 0.024472752 0.036314557 5.17E-06 5.286883489 -0.098544436 MSMTGAGKS(ph)PPSVQSLAMR ddPTM_HeLa_A485_30min_R1 2 MSMTGAGKSPPSVQSLAMR 19 1 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 MSMTGAGKS(0.982)PPS(0.017)VQS(0.001)LAMR;MSMTGAGKS(0.97)PPS(0.03)VQSLAMR ; 140.66 1.42E-07 1595240000 636340 702440 588130 665820 1019180 836920 1210250 1482660 660430 1082960 TRUE FALSE FALSE 777891.6377 784584.2476 805703.7611 702192.0607 917706.8606 880739.8371 951670.2007 1119035.31 792972.2432 812998.0024 0.956818633 0.965050646 0.991027971 0.863706994 1.1287935 1.083323495 1.170568929 1.376430578 0.975368009 1 19.63289228 -5.82339929 8.484855193 1.142348402 0.949210755 0.387360845 0.108046177 0.268332303 33.25562131 0.033139078 0.037693924 1.50E-06 5.82339929 -0.193137646 MSMTGAGKS(ph)PPSVQSLAMR ddPTM_HeLa_A486_30min_R1 1 MSMTGAGKSPPSVQSLAMR 19 1 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 MS(0.011)MT(0.099)GAGKS(0.888)PPS(0.002)VQSLAMR 98.135 0.00015239 866700000 221130 181400 123500 93612 241040 211050 285160 269750 144060 213250 TRUE FALSE FALSE 205629.9289 167025.2034 171322.5074 217933.4669 210806.5156 185012.7968 213809.9519 208333.8136 156547.2368 159850.812 1.286386515 1.044881795 1.071765012 1.363355395 1.318770377 1.157409177 1.337559373 1.303301566 0.979333385 1 17.28636655 -7.770479005 24.98771043 0.989666481 1.231467627 0.466294742 0.10510245 204.7214296 565878.514 0.103317958 0.02823777 1.70E-08 7.770479005 0.241801146 MSNIMQSIANSLPPHMS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 MSNIMQSIANSLPPHMSPVK 20 0 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 MSNIMQSIANSLPPHMS(1)PVK;MSNIMQSIANSLPPHMS(1)PVK ; 125.78 4.77E-07 49497000 47470 46585 26534 15184.5 48095 48153 54653 52469 40331 55826 TRUE FALSE FALSE 44142.59814 42893.43494 36808.67541 35350.28338 42062.47663 42212.37244 40978.24134 40522.95409 43826.92355 41846.80623 1.054861819 1.025010958 0.879605368 0.844754632 1.005153808 1.008735821 0.979244177 0.968364321 1.047318242 1 15.3528299 MSPNETLFLES(ph)TNK ddPTM_HeLa_A485_30min_R1 3 MSPNETLFLESTNK 14 0 Q9HB90;Q9NQL2 Q9HB90 RRAGC;RRAGD Ras-related GTP-binding protein C;Ras-related GTP-binding protein D 1 0 MSPNETLFLES(0.987)T(0.013)NK;MSPNETLFLES(0.95)T(0.05)NK;MSPNETLFLES(0.96)T(0.04)NK ;; 290.5 2.27E-68 1388020000 1085030 632199 576772 1550710 1103860 770937 1414520 947910 639877 1924290 TRUE FALSE FALSE 1326391.18 706129.1736 790143.9643 1635421.361 993955.8225 811302.0692 1112296.246 715433.5862 768294.4446 1444599.917 0.91817199 0.488806046 0.546963872 1.132092936 0.688049204 0.561610215 0.769968372 0.495246869 0.53183891 1 20.46223856 -5.992201416 24.97269474 0.643937048 0.757125969 0.037403896 0.216059465 625.9259689 2004327.936 0.067618269 0.076536732 1.02E-06 5.992201416 0.113188921 MSPNETLFLES(ph)TNK ddPTM_HeLa_A486_30min_R1 6 MSPNETLFLESTNK 14 0 Q9HB90;Q9NQL2 Q9HB90 RRAGC;RRAGD Ras-related GTP-binding protein C;Ras-related GTP-binding protein D 1 0 MSPNETLFLES(0.839)T(0.161)NK;MSPNETLFLES(0.971)T(0.029)NK;MSPNETLFLES(0.984)T(0.016)NK;MSPNETLFLES(0.951)T(0.049)NK;MSPNETLFLES(0.959)T(0.041)NK;MSPNETLFLES(0.917)T(0.083)NK ;;;;; 256.71 1.38E-41 2654240000 1103916 1560432 1006583 920279 1490181 2294830 2707730 2275050 1273892 2017290 TRUE FALSE FALSE 1026537.189 1436777.685 1396358.895 2142456.02 1303268.604 2011717.207 2030227.315 1757070.779 1384313.984 1512147.454 0.678860508 0.95015713 0.923427733 1.416830095 0.861866084 1.330371057 1.342611998 1.161970531 0.915462299 1 20.5281674 -4.499765138 1.333116382 1.155994475 0.608676209 0.369976277 0.182800776 0.90154726 1.964253136 0.054204771 0.597776074 3.16E-05 4.499765138 -0.547318266 MSQPGS(ph)PSPK ddPTM_HeLa_A485_30min_R1 11 MSQPGSPSPK 10 0 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 MSQPGS(0.999)PSPK;MS(0.002)QPGS(0.994)PS(0.004)PK;MSQPGS(0.996)PS(0.004)PK;MSQPGS(0.998)PS(0.002)PK;MSQPGS(0.996)PS(0.004)PK;MSQPGS(1)PSPK;MSQPGS(0.99)PS(0.01)PK;MSQPGS(0.996)PS(0.004)PK;MSQPGS(0.995)PS(0.005)PK;MS(0.002)QPGS(0.981)PS(0.017)PK;MS(0.002)QPGS(0.986)PS(0.012)PK ;;;;;;;;;; 191.95 1.10E-09 17947950000 20018390 19780420 13972830 24761330 24377100 20684080 29917480 31443000 16436240 34000960 TRUE FALSE FALSE 24471411.79 22093568.05 19141961.27 26113978.76 21950030.33 21767066.45 23525365.99 23731554.95 19734842.61 25525146.41 0.958717784 0.865560875 0.749925621 1.023068716 0.85993749 0.852769504 0.921654498 0.929732373 0.773152964 1 24.6054159 -10.22432389 4.916931864 1.000018029 0.882535545 0.172328732 0.077811251 1.48E-05 2.34E-06 0.072736566 0.017638502 5.97E-11 10.22432389 -0.117482483 MSQPGS(ph)PSPK ddPTM_HeLa_A486_30min_R1 11 MSQPGSPSPK 10 0 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 MS(0.005)QPGS(0.583)PS(0.413)PK;MS(0.002)QPGS(0.997)PS(0.001)PK;MSQPGS(0.997)PS(0.003)PK;MSQPGS(0.999)PS(0.001)PK;MS(0.001)QPGS(0.944)PS(0.056)PK;MSQPGS(0.756)PS(0.244)PK;MSQPGS(0.992)PS(0.008)PK;MSQPGS(0.939)PS(0.061)PK;MSQPGS(0.979)PS(0.021)PK;MSQPGS(0.994)PS(0.006)PK;MSQPGS(0.991)PS(0.009)PK ;;;;;;;;;; 191.48 5.28E-10 26580430000 38818950 34688550 18558890 15599720 31232320 36645630 45873630 41902570 26904850 49267400 TRUE FALSE FALSE 36097942.07 31939702.96 25745389.23 36316936.53 27314871.2 32124664.76 34395562.57 32362269.54 29236984.06 36930522.36 0.977455496 0.864859225 0.697130384 0.983385401 0.739628617 0.869867597 0.93135868 0.876301429 0.791675346 1 25.13831033 -6.521682622 24.97861625 0.89110958 0.847112432 0.046339499 0.096698259 174.8580501 3651714.774 0.035729467 0.02806088 3.01E-07 6.521682622 -0.043997148 MSS(ph)PEDDSDTKR ddPTM_HeLa_A485_30min_R1 1 MSSPEDDSDTKR 12 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 MS(0.196)S(0.804)PEDDSDTKR 127.36 2.17E-05 215260000 226660 242740 162570 286150 295340 255900 356580 340510 198230 427650 TRUE FALSE FALSE 277079.735 271126.3314 222711.4081 301781.6499 265934.9126 269298.5283 280393.77 256999.3886 238012.9427 321044.7253 0.863056494 0.844512649 0.693708354 0.939998779 0.828342258 0.838819352 0.873379152 0.800509612 0.741370046 1 18.29241477 -11.1575958 2.482700585 1.427922416 0.826187066 0.393973253 0.065148653 10598708.99 4338851.38 25271071.65 0.016335558 6.96E-12 11.1575958 -0.60173535 MSS(ph)PEDDSDTKR ddPTM_HeLa_A486_30min_R1 2 MSSPEDDSDTKR 12 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 MS(0.096)S(0.904)PEDDSDTKR;MS(0.115)S(0.885)PEDDSDTKR ; 134.04 1.15E-05 369010000 719220 707520 364500 313110 672630 807630 957340 905870 576660 1019160 TRUE FALSE FALSE 668806.3921 651453.5385 505644.1616 728935.9037 588262.4734 707992.822 717803.4063 699623.176 626645.3531 763955.7024 0.875451796 0.85273732 0.661876284 0.954159909 0.770021706 0.926745909 0.939587733 0.91579024 0.820263991 1 19.54312946 -6.278845616 24.45936212 0.916408859 0.82286192 0.263173553 0.081536296 924.9178368 1299696.142 0.027993141 0.024749608 5.26E-07 6.278845616 -0.093546939 MSS(ph)PLADAK ddPTM_HeLa_A485_30min_R1 3 MSSPLADAK 9 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 MS(0.002)S(0.998)PLADAK;MSS(1)PLADAK;MS(0.001)S(0.999)PLADAK ;; 194.74 5.87E-09 1214920000 2856650 2535710 1874130 3635730 3777900 2978600 4085210 4214900 2426890 4813110 TRUE FALSE FALSE 3492101.937 2832239.227 2567448.676 3834340.724 3401759.011 3134554.89 3212371.51 3181189.166 2913944.562 3613290.256 0.966460398 0.783839389 0.710556998 1.061177058 0.941457445 0.867507083 0.889043305 0.880413402 0.806451836 1 21.78488172 -10.9761991 2.56191912 1.105906482 0.878079865 0.131506009 0.093629909 17101163.65 7709346.994 10728612.95 0.023938904 1.06E-11 10.9761991 -0.227826617 MSS(ph)PLADAK ddPTM_HeLa_A486_30min_R1 4 MSSPLADAK 9 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 MS(0.275)S(0.725)PLADAK;MS(0.005)S(0.995)PLADAK;MSS(1)PLADAK;MS(0.019)S(0.981)PLADAK ;;; 181.53 3.44E-08 1291020000 3176170 3176470 1735460 1361310 3246200 3564220 4247340 4078160 2529110 4274300 TRUE FALSE FALSE 2953536.885 2924754.949 2407476.589 3169198.477 2839031.326 3124502.775 3184610.608 3149651.994 2748335.291 3203987.459 0.9218316 0.912848438 0.751400129 0.989141973 0.886093146 0.975191949 0.99395227 0.983041299 0.857785908 1 21.61143707 -5.318285518 24.99997228 0.953912439 0.867107472 0.319043308 0.062116543 340.6641628 149817.5133 0.017357406 0.025745202 4.81E-06 5.318285518 -0.086804967 MSSEGPPRMS(ph)PK ddPTM_HeLa_A485_30min_R1 4 MSSEGPPRMSPK 12 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 MS(0.001)S(0.002)EGPPRMS(0.998)PK;MSSEGPPRMS(1)PK;MS(0.001)SEGPPRMS(0.999)PK;MSSEGPPRMS(1)PK ;;; 106.82 0.00025481 2777880000 4080510 3781030 2957510 6745880 5482640 4477750 7093020 6720260 3859300 8718400 TRUE FALSE FALSE 4988205.372 4223188.568 4051616.021 7114390.343 4936769.111 4712198.066 5577538.332 5072105.698 4633826.11 6545063.33 0.762132484 0.64524793 0.619033891 1.086985715 0.754273696 0.71996218 0.852174846 0.774951355 0.707987971 1 22.64197572 -11.65910287 1.99755345 5.743005733 0.771202342 0.239290279 0.123409876 3354984.136 112853.253 72565436.42 0.032352822 2.19E-12 11.65910287 -4.971803391 MSSEGPPRMS(ph)PK ddPTM_HeLa_A486_30min_R1 4 MSSEGPPRMSPK 12 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 MSSEGPPRMS(1)PK;MSSEGPPRMS(1)PK;MSSEGPPRMS(1)PK;MSSEGPPRMS(1)PK ;;; 120.92 5.22E-05 3425940000 5770450 5593220 2981760 3154160 5375930 6525900 8445800 8002900 4664710 9645400 TRUE FALSE FALSE 5365971.254 5149992.877 4136377.326 7343043.882 4701630.731 5720800.808 6332571.509 6180814.372 5069050.819 7230129.059 0.742168115 0.71229612 0.572102834 1.015617263 0.650283099 0.791244632 0.87585871 0.854869162 0.701101015 1 22.78558997 -14 0.090266211 1.704701571 0.591247039 0.274835566 0.117315082 283.8174924 1.77584189 38.92317418 2.703229533 1.00E-14 14 -1.113454532 MSSTFIGNSTAIQELFK ddPTM_HeLa_A485_30min_R1 2 MSSTFIGNSTAIQELFK 17 0 A0A0B4J269;Q13509;Q13509-2 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 ; ; 133.48 8.35E-06 25303000 53124 44020 40227 67435 69033 59518 77598 74572 46848 103955 FALSE FALSE TRUE 64941.25052 49167.75608 55108.64129 71118.8033 62159.83213 62634.27045 61018.55338 56283.10008 56249.96388 78040.93165 0.832143455 0.630025232 0.706150479 0.911301311 0.796502948 0.8025823 0.781878843 0.721199746 0.720775146 1 16.25194338 -10.96511797 2.708950036 1.187900446 0.766391742 0.47452253 0.073570638 18897717.91 7575736.873 22255464.68 0.019421776 1.08E-11 10.96511797 -0.421508704 MSSTFIGNSTAIQELFK ddPTM_HeLa_A486_30min_R1 1 MSSTFIGNSTAIQELFK 17 0 A0A0B4J269;Q13509;Q13509-2 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 182.02 2.79E-13 14279000 31361 38388 27121 17656 38260 46739 50377 49165 41070 54690 FALSE FALSE TRUE 29162.75585 35345.99507 37622.97753 41104.06028 33461.07404 40972.81739 37772.14177 37971.20276 44629.98067 40995.26803 0.71136883 0.86219695 0.917739518 1.002653776 0.81621796 0.99945236 0.92137809 0.926233797 1.088661761 1 15.32316977 -3.41776008 0.794212896 0.963081831 4.65E-21 0.577105792 0.066783679 6.252550108 1.137131365 0.023882552 7.276007277 0.000382155 3.41776008 -0.963081831 MSSYAFFVQTCR ddPTM_HeLa_A485_30min_R1 4 MSSYAFFVQTCR 12 0 Q5T7C4;P09429;B2RPK0;D6R9A6;P26583 Q5T7C4;D6R9A6 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 0 0 ;;; ;;; 269.76 4.73E-50 372144000 322103 439142 455332 336912 568310 375016 487449 532401 348849 486780 FALSE FALSE TRUE 393753.7011 490495.8369 623778.2547 355316.6495 511727.0609 394651.2579 383301.5391 401828.82 418859.7945 365434.7045 1.077493999 1.342225658 1.706948593 0.972312276 1.400324202 1.079950133 1.048892003 1.099591295 1.146195994 1 18.47925412 -6.171453237 1.353945525 1.072205818 1.32785067 0.235785537 0.190091854 0.631039583 2.350335519 0.086386692 0.084070688 6.74E-07 6.171453237 0.255644852 MSSYAFFVQTCR ddPTM_HeLa_A486_30min_R1 3 MSSYAFFVQTCR 12 0 Q5T7C4;P09429;B2RPK0;D6R9A6;P26583 Q5T7C4;D6R9A6 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 0 0 ;; ;; 324.1 2.92E-91 262951000 239749 259837 239123 83237 298760 241101 294425 284732 236202 263866 FALSE FALSE TRUE 222943.8332 239246.5698 331717.8295 193779.9426 261286.735 211356.41 220756.7509 219904.7393 256676.1795 197792.2361 1.1271617 1.209585242 1.677102378 0.979714605 1.321016133 1.068577888 1.116104227 1.111796618 1.29770604 1 17.59362627 MSTS(ph)QNS(ph)IPFEHHGK ddPTM_HeLa_A485_30min_R1 1 MSTSQNSIPFEHHGK 15 0 P48730-2 P48730-2 CSNK1D Casein kinase I isoform delta 2 0 MS(0.3)T(0.332)S(0.369)QNS(0.999)IPFEHHGK 50.425 0.024664 53919000 58384 68664 59729 56109 72091 64634 80930 87161 60295 74645 TRUE FALSE FALSE 71371.31938 76693.6575 81825.24263 59174.09259 64913.36691 68018.1363 63638.64436 65784.62809 72395.65344 56037.37524 1.273637801 1.368616163 1.460190494 1.055975451 1.158394137 1.213799469 1.135646416 1.173941995 1.291917281 1 15.77410176 -5.260027913 24.99980169 1.157116927 1.367594955 0.57637702 0.086283264 92.70873812 1642031.169 0.02337405 0.037865415 5.50E-06 5.260027913 0.210478028 MSTS(ph)QNS(ph)IPFEHHGK ddPTM_HeLa_A486_30min_R1 1 MSTSQNSIPFEHHGK 15 0 P48730-2 P48730-2 CSNK1D Casein kinase I isoform delta 2 0 MS(0.145)T(0.171)S(0.684)QNS(1)IPFEHHGK 65.887 0.0070856 150550000 171780 173220 99904 47696 165910 149560 190380 181710 133560 191720 TRUE FALSE FALSE 159739.1091 159493.4163 138589.5043 111038.6984 145100.0208 131108.8078 142744.9104 140338.5997 145137.0883 143712.0641 1.111521918 1.1098123 0.964355395 0.772647022 1.009657899 0.91230203 0.993270198 0.976526227 1.009915829 1 17.13282165 -4.775817463 5.831474262 0.948681437 1.112309525 0.461133116 0.067269074 0.127089162 14.47799139 0.017883165 0.041611391 1.68E-05 4.775817463 0.163628088 MSTSQNS(ph)IPFEHHGK ddPTM_HeLa_A486_30min_R1 1 MSTSQNSIPFEHHGK 15 0 P48730-2 P48730-2 CSNK1D Casein kinase I isoform delta 1 0 MSTSQNS(1)IPFEHHGK 169.28 2.57E-12 173210000 195710 179250 126100 63112 206070 171820 226280 217820 174920 222380 TRUE FALSE FALSE 181991.7396 165045.5772 174929.2971 146927.9255 180222.7791 150622.5953 169662.3507 168227.141 190082.2064 166694.6005 1.091767454 0.990107518 1.0493999 0.881419824 1.081155469 0.903584128 1.017803517 1.009193702 1.14030212 1 17.34684785 -7.555276354 24.60861935 1.071683527 0.999227754 0.123220788 0.071480542 304.4858287 231275.7476 0.044906426 0.016973349 2.78E-08 7.555276354 -0.072455773 MSVNS(ph)GSSSSK ddPTM_HeLa_A486_30min_R1 1 MSVNSGSSSSK 11 0 Q68DW7;Q8WVM7-2;Q8WVM7 Q68DW7 DKFZp781D1416;STAG1 Cohesin subunit SA-1 1 0 MSVNS(0.754)GS(0.121)S(0.106)S(0.017)S(0.001)K 88.122 0.0019358 0 306240 262000 129840 201360 234150 331610 438390 393550 214320 523930 TRUE FALSE FALSE 284774.1574 241238.1658 180117.5252 468776.2562 204780.7236 290699.3298 328700.1852 303947.2561 232897.4302 392734.5178 0.725106006 0.614252516 0.458624127 1.193621225 0.521422779 0.740192972 0.836952624 0.773925495 0.593014924 1 18.58319488 -11.77077671 1.957002179 9.999079166 0.720892055 0.160070879 0.194021353 8966208.759 192853.1666 360705399 0.04770039 1.70E-12 11.77077671 -9.278187112 MSVQPTVS(ph)LGGFEITPPVVLR ddPTM_HeLa_A485_30min_R1 1 MSVQPTVSLGGFEITPPVVLR 21 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 MSVQPT(0.003)VS(0.997)LGGFEITPPVVLR 103.85 0.00016323 22213000 7640.9 7887.7 8946.5 5867.6 10269 7660.6 12230 12359 7666.2 9083.3 TRUE FALSE FALSE 9340.591844 8810.097901 12256.18264 6188.13213 9246.582303 8061.69717 9616.96059 9327.935872 9204.736021 6819.000476 1.369789 1.291992563 1.797357646 0.907483751 1.35600259 1.1822403 1.410318217 1.367933014 1.349865872 1 12.73534457 -10.78532033 2.217646301 0.887879196 1.335655226 0.191902438 0.20744638 7191866.807 4183916.195 4350273.699 0.05228072 1.64E-11 10.78532033 0.44777603 MSVQPTVSLGGFEIT(ph)PPVVLR ddPTM_HeLa_A485_30min_R1 2 MSVQPTVSLGGFEITPPVVLR 21 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 MSVQPTVSLGGFEIT(1)PPVVLR;MSVQPTVSLGGFEIT(1)PPVVLR ; 171 4.12E-13 152006000 35842 43981 45861 37974 61144 43449 47508 62469 41979 51182 TRUE FALSE FALSE 43814.92925 49124.19537 62826.89234 40048.42346 55056.28867 45723.92246 37357.5277 47148.3798 50403.80025 38423.26933 1.140322778 1.278501185 1.635126147 1.042296092 1.432889226 1.190006037 0.972263119 1.227078815 1.311804048 1 15.22969266 -6.508456114 24.3651196 1.137341862 1.308311266 0.188479277 0.175158224 860.1804133 1453166.434 0.062615563 0.053156367 3.10E-07 6.508456114 0.170969403 MSVQPTVSLGGFEIT(ph)PPVVLR ddPTM_HeLa_A486_30min_R1 1 MSVQPTVSLGGFEITPPVVLR 21 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 1 0 MSVQPTVSLGGFEIT(1)PPVVLR 131.09 5.22E-06 77901000 41197 48891 40243 19501 63261 45264 55054 50750 52274 42225 TRUE FALSE FALSE 38309.30304 45016.6991 55826.16734 45399.31353 55326.21549 39679.78789 41278.9069 39195.33286 56805.15241 31651.58516 1.210343901 1.422257333 1.763771611 1.434345651 1.747976135 1.253642991 1.304165548 1.238337122 1.794701659 1 14.94999013 -6.299385162 24.98900286 1.332190285 1.519803451 0.146081858 0.237528408 1202.697018 792026.4957 0.082242874 0.072532813 5.02E-07 6.299385162 0.187613166 MSVQPTVSLGGFEITPPVVLR ddPTM_HeLa_A485_30min_R1 5 MSVQPTVSLGGFEITPPVVLR 21 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 0 ;;;; ;;;; 292.27 1.09E-76 199137000 95226.8 122845 122926.7 95479.6 158243 124074 150573.6 175137 112078.3 143399 FALSE FALSE TRUE 116409.6731 137210.6541 168402.4017 100695.4088 142487.7713 130570.3228 118402.3203 132184.3761 134571.3868 107652.2684 1.081349004 1.27457281 1.564318191 0.935376563 1.323592837 1.212889656 1.099859038 1.227882869 1.250056212 1 16.71601919 -13.74606196 0.223471123 1.22E-11 1.249143435 0.14399114 0.157843343 270.3802451 3.004983459 121.9505631 0.29049841 1.79E-14 13.74606196 1.249143435 MSVQPTVSLGGFEITPPVVLR ddPTM_HeLa_A486_30min_R1 4 MSVQPTVSLGGFEITPPVVLR 21 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 0 ;;; ;;; 268.92 2.45E-63 135692000 83232 98467 92205 33151.4 115355 96337 107577 108806 89310 102806 FALSE FALSE TRUE 77397.86661 90664.11631 127909.2453 77178.13458 100886.1003 84451.92042 80660.09677 84033.24902 97051.46271 77062.70845 1.004349162 1.176497921 1.659807291 1.001497821 1.309142934 1.095885703 1.046681312 1.090452837 1.259382971 1 16.23374527 -6.280862329 23.25666503 1.100896376 1.238427131 0.11366699 0.183220283 779.3161542 933133.3211 0.064831495 0.05728842 5.24E-07 6.280862329 0.137530755 MT(ph)S(ph)VGT(ph)NRAR ddPTM_HeLa_A485_30min_R1 2 MTSVGTNRAR 10 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77;Q5VU81;Q5VU80;Q5VU79;Q5VU78 F8W726 UBAP2L Ubiquitin-associated protein 2-like 3 0 MT(1)S(1)VGT(1)NRAR;MT(1)S(1)VGT(1)NRAR ; 72.2 0.0053888 1286080000 45022 79470 62796 58922 96006 86600 86223 115577 70937 88793 TRUE FALSE FALSE 55036.98858 88763.3252 86026.85356 62140.75966 86447.30554 91134.24209 67800.75167 87231.55953 85173.40523 66658.53921 0.825655486 1.331612217 1.290560138 0.932225044 1.296867687 1.367180307 1.017135276 1.308632931 1.277756852 1 16.02450208 -4.249619239 24.44175319 1.208703521 0.825655169 0.360382202 0.150381194 1458.075126 3014942.104 0.036494105 0.568447732 5.63E-05 4.249619239 -0.383048352 MT(ph)S(ph)VGT(ph)NRAR ddPTM_HeLa_A486_30min_R1 1 MTSVGTNRAR 10 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU77;Q5VU81;Q5VU80;Q5VU79;Q5VU78 F8W726 UBAP2L Ubiquitin-associated protein 2-like 3 0 MT(1)S(1)VGT(1)NRAR 61.815 0.011325 656120000 109640 129510 121130 67737 188940 112590 165150 169920 96773 138360 TRUE FALSE FALSE 101954.8022 119247.1559 168034.78 157695.1592 165241.3834 98699.79053 123827.7232 131232.9253 105161.3616 103713.7554 0.983040309 1.149771845 1.620178339 1.520484516 1.593244625 0.951655739 1.19393732 1.265337706 1.013957706 1 16.66224772 -6.268335688 24.97467415 1.108371283 1.382810757 0.332534642 0.202702116 762.915059 2762855.256 0.076955008 0.069376425 5.39E-07 6.268335688 0.274439473 MT(ph)VKT(ph)LHGPAMVK ddPTM_HeLa_A485_30min_R1 1 MTVKTLHGPAMVK 13 1 Q96PD4 Q96PD4 IL17F Interleukin-17F 2 0 MT(1)VKT(1)LHGPAMVK 46.926 0.0084777 0 421130 396580 265680 310960 511910 266950 314750 304880 286470 415800 TRUE FALSE FALSE 514808.9156 442956.5812 363966.0879 327946.9574 460942.443 280927.0892 247501.0912 230107.702 343961.9013 312148.7122 1.649242478 1.419056251 1.166002209 1.050611278 1.47667578 0.89997837 0.792894802 0.737173318 1.101916772 1 18.25187399 -6.275872618 23.34905116 0.882872261 1.328912969 0.5999023 0.181074176 250.000112 404430.253 0.066883767 0.059309715 5.30E-07 6.275872618 0.446040707 MTAMGS(ph)SPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR ddPTM_HeLa_A485_30min_R1 4 MTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR 41 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 MT(0.022)AMGS(0.733)S(0.212)PNIAS(0.004)S(0.004)GVAS(0.004)DT(0.013)IAFGEHHLPPVS(0.005)MAS(0.001)T(0.001)VPHSLR;MT(0.117)AMGS(0.441)S(0.441)PNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR;MTAMGS(0.859)S(0.141)PNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR;MT(0.001)AMGS(0.538)S(0.46)PNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR ;;; 192.61 8.91E-23 1054220000 13469.3 13774.4 19953.6 35505.9 29848.3 30762.4 37775 44625.4 21338 47384.3 TRUE FALSE FALSE 16465.49932 15385.19626 27335.26698 37445.49741 26876.49845 32373.0717 29704.06266 33680.95068 25620.34088 35572.26605 0.462874625 0.432505375 0.768443229 1.052659883 0.755546425 0.910064927 0.83503431 0.946831743 0.72023359 1 15.11846526 -4.848252462 4.010020809 0.881368643 0.444077512 0.76014898 0.09738897 0.090018897 2.701580792 0.024142882 0.056539363 1.42E-05 4.848252462 -0.437291131 MTAMGS(ph)SPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR ddPTM_HeLa_A486_30min_R1 2 MTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR 41 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 MT(0.001)AMGS(0.833)S(0.166)PNIASSGVASDTIAFGEHHLPPVSMASTVPHSLR;MT(0.245)AMGS(0.521)S(0.232)PNIAS(0.001)S(0.001)GVASDTIAFGEHHLPPVSMASTVPHSLR ; 234.01 3.72E-52 512370000 29879 16691 11137 19616 22007.4 19210.4 20765.5 16406.2 18670.7 36404 TRUE FALSE FALSE 27784.6364 15368.34437 15449.54466 45667.03934 19247.02668 16840.41617 15569.75226 12670.8664 20289.09131 27288.20145 1.018192293 0.563186416 0.566162071 1.673508583 0.70532412 0.617131774 0.570567184 0.464334977 0.74351149 1 14.73598969 -5.977748453 24.99953395 0.641332614 0.935707939 0.144397281 0.316621904 454.4226397 510539.7985 0.100748845 0.11423106 1.05E-06 5.977748453 0.294375324 MTDQEAIQDLWQWR ddPTM_HeLa_A485_30min_R1 5 MTDQEAIQDLWQWR 14 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ;;;; ;;;; 229.54 8.49E-31 406526000 182601 231371 233966 186204 308236 219274 266885 327705 230402 266024 FALSE FALSE TRUE 223219.9625 258427.8258 320519.7595 196375.853 277546.9416 230754.8476 209862.8395 247334.8349 276641.568 199709.1126 1.117725474 1.294021201 1.604933072 0.983309427 1.38975602 1.155454774 1.050842582 1.238475459 1.385222559 1 17.60754064 -5.278726314 24.99814174 1.185154658 1.334406107 0.160145855 0.173333172 1640.816453 2372733.69 0.048469981 0.072080563 5.26E-06 5.278726314 0.149251448 MTDQEAIQDLWQWR ddPTM_HeLa_A486_30min_R1 5 MTDQEAIQDLWQWR 14 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ;;;; ;;;; 214.81 1.56E-21 379009000 331160 364339 305958 150441 396640 327528 384689 380763 290026 375826 FALSE FALSE TRUE 307947.3941 335467.4507 424433.1314 350234.2509 346889.7127 287120.9254 288435.7434 294071.5769 315165.6872 281716.7234 1.093110094 1.190797077 1.506595442 1.243214271 1.231342281 1.019183107 1.02385027 1.043855591 1.118732617 1 18.10388568 -6.185084475 4.172430913 1.042471455 1.267500067 0.520927065 0.101501471 0.197900514 6.548991923 0.036756599 0.036374333 6.53E-07 6.185084475 0.225028612 MTDVFEGS(ph)IIRCMRR ddPTM_HeLa_A486_30min_R1 1 MTDVFEGSIIRCMRR 15 2 P42285;H0YAC4 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 1 0 MT(0.16)DVFEGS(0.84)IIRCMRR 47.915 0.018533 216730000 147720 239730 400240 27612 339150 133200 126680 172390 256030 58382 TRUE FALSE FALSE 137365.5908 220732.9217 555223.6468 64282.13143 296610.6446 116767.1383 94983.32412 133140.5602 278222.8865 43762.7672 3.138868943 5.04385202 12.68712384 1.468877211 6.777693998 2.668184527 2.170414035 3.042324989 6.357525 1 15.41741634 MTEEEVEMLVAGHEDS(ph)NGCINYEAFVR ddPTM_HeLa_A485_30min_R1 2 MTEEEVEMLVAGHEDSNGCINYEAFVR 27 0 G3V1Y7;J3KND3;P60660 G3V1Y7 MYL6 Myosin light polypeptide 6 1 0 MT(0.001)EEEVEMLVAGHEDS(0.999)NGCINYEAFVR;MTEEEVEMLVAGHEDS(1)NGCINYEAFVR ; 205.72 1.36E-28 101194000 45281 46166 54476 54704 70240 41904 59971 72518 54029 70574 TRUE FALSE FALSE 55353.60223 51564.71211 74628.93934 57692.341 63246.65897 44098.02864 47157.70593 54732.8468 64872.12472 52981.20062 1.044778178 0.973264318 1.40859283 1.088920982 1.19375662 0.832333509 0.890083754 1.033061655 1.224436667 1 15.69319292 -6.230044142 24.95874755 0.991430695 1.14437317 0.204676891 0.143598259 1118.458056 889157.9551 0.04949129 0.049486729 5.89E-07 6.230044142 0.152942475 MTEEEVEMLVAGHEDS(ph)NGCINYEAFVR ddPTM_HeLa_A486_30min_R1 2 MTEEEVEMLVAGHEDSNGCINYEAFVR 27 0 G3V1Y7;J3KND3;P60660 G3V1Y7 MYL6 Myosin light polypeptide 6 1 0 MTEEEVEMLVAGHEDS(1)NGCINYEAFVR;MTEEEVEMLVAGHEDS(1)NGCINYEAFVR ; 143.82 3.53E-09 130633000 52711 73373 67030 35418 89838 72688 83535 94622 67334 65737 TRUE FALSE FALSE 49016.2311 67558.65626 92985.81113 82454.89393 78569.68033 63720.4936 62633.65946 73078.63618 73170.56533 49276.02732 0.994727736 1.371024815 1.887039524 1.673326735 1.594480818 1.293133742 1.2710777 1.483046425 1.484912021 1 15.58859833 -6.266242667 24.30612529 1.334414608 1.527399442 0.127076877 0.25012348 668.9375541 3385017.641 0.092002747 0.083765521 5.42E-07 6.266242667 0.192984834 MTEEEVEMLVAGHEDS(ph)NGCINYEELVR ddPTM_HeLa_A485_30min_R1 15 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 G8JLA2;P60660-2;F8VZU9;F8W180;F8VXL3 G8JLA2 MYL6 Myosin light polypeptide 6 1 0 MT(0.002)EEEVEMLVAGHEDS(0.995)NGCINY(0.003)EELVR;MTEEEVEMLVAGHEDS(0.998)NGCINY(0.002)EELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR ;;;;;;;;;;;;;; 346.66 1.12E-145 2198681000 816570 912571 1037479 932684 1361049 896495 1204186 1175193 1001788 1229371 TRUE FALSE FALSE 998213.1794 1019288.24 1421285.655 983634.1652 1225538.183 943434.092 946901.8238 886975.0741 1202837.663 922911.4346 1.081591518 1.104426928 1.540002217 1.065794754 1.32790443 1.022236865 1.025994249 0.961061962 1.303307791 1 19.81583268 -6.276062597 24.7244389 1.057803667 1.22607686 0.209343688 0.156694737 1112.688628 1881290.143 0.054288229 0.048077832 5.30E-07 6.276062597 0.168273193 MTEEEVEMLVAGHEDS(ph)NGCINYEELVR ddPTM_HeLa_A486_30min_R1 12 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 G8JLA2;P60660-2;F8VZU9;F8W180;F8VXL3 G8JLA2 MYL6 Myosin light polypeptide 6 1 0 MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR ;;;;;;;;;;; 354.88 5.74E-146 2563010000 695032.7 1069125 966523.2 445429.3 1364881 1042265 1156573.8 1264166 955709.4 1023458.7 TRUE FALSE FALSE 646314.4969 984403.6413 1340786.867 1036981.921 1193684.898 913680.9413 867186.8022 976342.9983 1038551.06 767177.9799 0.842457049 1.283148979 1.74768685 1.351683636 1.555942596 1.19096346 1.130359349 1.272642104 1.353728975 1 19.54920179 -6.361099292 24.95040705 1.202878512 1.373664376 0.110727054 0.231982641 101.5788456 25413.63639 0.084891745 0.074867473 4.35E-07 6.361099292 0.170785864 MTEEEVEMLVAGHEDSNGCINY(ph)EELVR ddPTM_HeLa_A486_30min_R1 1 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 G8JLA2;P60660-2;F8VZU9;F8W180;F8VXL3 G8JLA2 MYL6 Myosin light polypeptide 6 1 0 MTEEEVEMLVAGHEDS(0.448)NGCINY(0.551)EELVR 40.404 0.009843 0 13239 14693 11963 6552.7 19010 13498 16820 16259 13316 14376 TRUE FALSE FALSE 12311.01447 13528.67317 16595.39398 15255.01676 16625.58854 11832.754 12611.4581 12557.18063 14470.2416 10776.15603 1.142430978 1.255426623 1.540010551 1.415626937 1.542812529 1.098049617 1.170311386 1.165274575 1.34280179 1 13.39555502 -6.27703982 24.90288986 1.166556124 1.383332617 0.397588206 0.137452056 894.9165756 1428545.557 0.050418304 0.044616345 5.28E-07 6.27703982 0.216776493 MTGLVDEAIDT(ph)KSLLDASEEAIKK ddPTM_HeLa_A485_30min_R1 2 MTGLVDEAIDTKSLLDASEEAIKK 24 2 P18206;P18206-2 P18206 VCL Vinculin 1 0 MTGLVDEAIDT(0.496)KS(0.496)LLDAS(0.007)EEAIKK;MTGLVDEAIDT(0.5)KS(0.5)LLDASEEAIKK ; 133.44 2.76E-06 47762000 25989 19635.5 13964.4 47397 54552 47015 120669 148252 27405 85211 TRUE FALSE FALSE 31770.16339 21931.70092 19130.41267 49986.17809 49120.61134 49476.6327 94887.08237 111892.9645 32904.93213 63969.46589 0.49664575 0.342846397 0.299055376 0.781406838 0.767875902 0.773441391 1.483318347 1.749162088 0.514384975 1 15.96509582 -6.004571532 1.150073177 1.215774211 0.392804889 0.463522055 0.330747934 0.399773655 1.11543646 0.155617373 0.17889074 9.90E-07 6.004571532 -0.822969323 MTGSAPPPS(ph)PTPNK ddPTM_HeLa_A486_30min_R1 2 MTGSAPPPSPTPNK 14 0 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 0 MTGSAPPPS(0.995)PT(0.005)PNK;MTGSAPPPS(0.999)PT(0.001)PNK ; 145.1 8.77E-08 150503000 186032.8 202717.2 113010 63550 179787.7 200108.1 208946.9 206083.5 174620 227057.8 TRUE FALSE FALSE 172992.8614 186653.1508 156770.4985 147947.6116 157237.0502 175420.7972 156666.1756 159162.7858 189756.2022 170201.049 1.016403027 1.096662752 0.921090084 0.869252055 0.923831264 1.030668132 0.920477145 0.93514574 1.114894434 1 17.3768804 -9.182880901 10.03897755 0.999993635 0.975952973 0.00171357 0.077691717 0 0 0.078146379 0.018953281 6.56E-10 9.182880901 -0.024040662 MTLIPS(ph)PNSPFQK ddPTM_HeLa_A485_30min_R1 1 MTLIPSPNSPFQK 13 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 MTLIPS(0.996)PNS(0.004)PFQK 121.24 0.00019196 0 113830 138240 111190 157580 167140 143200 188310 184800 130630 205400 TRUE FALSE FALSE 139151.0908 154405.9655 152323.808 166188.1964 150498.9547 150697.7306 148076.0301 139477.5102 156846.2428 154197.5601 0.902420834 1.001351548 0.987848367 1.077761518 0.976013853 0.977302951 0.960300734 0.904537725 1.017177202 1 17.23442041 -6.208433729 3.464954965 0.964583437 0.995479161 0.019617232 0.048485694 0.710008276 17.29848113 0.017277921 0.016752466 6.19E-07 6.208433729 0.030895724 MTLIPS(ph)PNSPFQK ddPTM_HeLa_A486_30min_R1 1 MTLIPSPNSPFQK 13 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 MTLIPS(0.986)PNS(0.014)PFQK 63.727 0.021354 62192000 32771 40619 29715 14512 38952 32814 42361 41504 34604 36855 TRUE FALSE FALSE 30473.92213 37400.20251 41221.4438 33784.6694 34066.27695 28765.74231 31761.82975 32054.44523 37603.50258 27626.26811 1.103077767 1.353791339 1.492110466 1.22291832 1.233111791 1.041246041 1.149696717 1.160288646 1.36115028 1 14.75375307 -5.710950777 2.688045496 1.154978238 1.321281127 0.229898637 0.128344343 0.39664317 5.848207568 0.04158952 0.054009169 1.95E-06 5.710950777 0.166302889 MTLIPSPNS(ph)PFQK ddPTM_HeLa_A485_30min_R1 1 MTLIPSPNSPFQK 13 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 MTLIPS(0.006)PNS(0.994)PFQK 120.68 8.51E-05 101130000 272370 260320 201130 287630 343610 258270 352270 353350 236500 352500 TRUE FALSE FALSE 332957.7668 290762.1595 275536.3567 303342.4986 309398.9819 271792.6178 277004.6367 266690.3585 283963.3807 264628.2373 1.258209518 1.098757119 1.041220542 1.146296789 1.16918355 1.027073379 1.046769005 1.007792521 1.073065307 1 18.01360749 -6.27178345 24.43278888 1.032416377 1.134848722 0.506403114 0.05490055 500.6116351 1182444.443 0.019718831 0.017603206 5.35E-07 6.27178345 0.102432346 MTLIPSPNS(ph)PFQK ddPTM_HeLa_A486_30min_R1 1 MTLIPSPNSPFQK 13 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 MTLIPS(0.016)PNS(0.984)PFQK 119.39 0.00011411 145660000 432540 425880 281180 125440 444250 446000 440150 495570 348910 501660 TRUE FALSE FALSE 402221.1796 392131.7178 390060.4263 292030.6594 388528.0225 390977.0546 330019.8146 382739.5292 379153.7997 376041.0707 1.069620345 1.0427896 1.037281448 0.776592458 1.033206351 1.039719023 0.87761641 1.017813103 1.00827763 1 18.52053071 -5.027899115 24.99503841 0.963150147 1.052162723 0.205308321 0.077243459 1076.540668 964481.5734 0.021045481 0.036576223 9.38E-06 5.027899115 0.089012576 MTNNEDS(ph)LS(ph)PTSSTLSNLELDAAEKDR ddPTM_HeLa_A486_30min_R1 1 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 2 0 MT(0.008)NNEDS(0.988)LS(0.944)PT(0.04)S(0.01)S(0.005)T(0.004)LSNLELDAAEKDR 83.559 0.0058184 28745000 50667 57168 35168 30071 62755 58887 75597 78456 45476 78366 TRUE FALSE FALSE 47115.50494 52637.79948 48785.99143 70006.8077 54883.68273 51622.12066 56681.83102 60593.28148 49417.8963 58742.64352 0.802066474 0.896074748 0.830503847 1.191754465 0.934307335 0.878784433 0.964917947 1.031504165 0.841261021 1 15.84212057 MTNNEDS(ph)LSPTSSTLSNLELDAAEKDR ddPTM_HeLa_A485_30min_R1 1 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 MTNNEDS(0.477)LS(0.273)PT(0.092)S(0.132)S(0.022)T(0.004)LSNLELDAAEKDR 151.38 1.64E-09 367980000 232920 266700 208270 322960 388240 313980 429460 442350 252690 484180 TRUE FALSE FALSE 284732.2504 297888.245 285317.7398 340602.487 349585.4624 330419.5073 337702.3626 333862.9689 303402.5652 363482.8367 0.783344416 0.819538682 0.784955192 0.937052462 0.961766078 0.90903744 0.929073751 0.918510959 0.834709468 1 18.47152772 -5.261668554 24.99999923 0.924534949 0.79830535 0.686840275 0.040566502 11.84051038 1291710.522 0.011051878 0.01762843 5.47E-06 5.261668554 -0.126229599 MTNNEDSLS(ph)PTSSTLSNLELDAAEKDR ddPTM_HeLa_A485_30min_R1 2 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 MT(0.001)NNEDS(0.079)LS(0.591)PT(0.214)S(0.079)S(0.03)T(0.005)LS(0.001)NLELDAAEKDR;MTNNEDS(0.04)LS(0.919)PT(0.04)SSTLSNLELDAAEKDR ; 135.45 1.62E-06 501730000 213229 241790 197493 296790 333490 315530 410550 440830 249490 397600 TRUE FALSE FALSE 260661.0554 270065.2372 270553.8791 313002.8862 300286.5646 332050.6629 322832.6386 332715.7513 299560.3545 298485.6373 0.873278385 0.904784698 0.906421768 1.04863634 1.006033548 1.112451058 1.081568418 1.114679267 1.003600566 1 18.18730199 -5.263227174 1.741498696 1.065443821 0.881534091 0.745554871 0.041742943 0.171178726 1.008278869 0.012813613 0.027022044 5.45E-06 5.263227174 -0.18390973 MTNNEDSLS(ph)PTSSTLSNLELDAAEKDR ddPTM_HeLa_A486_30min_R1 4 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 MTNNEDS(0.188)LS(0.756)PT(0.038)S(0.008)S(0.008)T(0.002)LSNLELDAAEKDR;MT(0.002)NNEDS(0.178)LS(0.663)PT(0.09)S(0.038)S(0.02)T(0.008)LS(0.002)NLELDAAEKDR;MTNNEDS(0.074)LS(0.868)PT(0.055)S(0.004)STLSNLELDAAEKDR;MTNNEDS(0.008)LS(0.825)PT(0.133)S(0.032)S(0.001)T(0.001)LSNLELDAAEKDR ;;; 152.19 1.49E-09 1090487000 780278 753669 453887 320119 809736 762561 949912 926253 561826 964460 TRUE FALSE FALSE 725584.5416 693945.5236 629644.2019 745253.2099 708171.3604 668483.977 712233.9705 715365.4119 610525.53 722952.9384 1.003640075 0.959876483 0.870933872 1.03084609 0.979553886 0.924657666 0.985173353 0.989504813 0.844488621 1 19.46354221 -9.639017665 5.242504984 1.000000002 0.95607561 0.056235913 0.055741123 18912338.72 17386378.14 0.560408687 0.013083895 2.30E-10 9.639017665 -0.043924392 MTNS(ph)PVLPVGSTTNGSR ddPTM_HeLa_A485_30min_R1 2 MTNSPVLPVGSTTNGSR 17 0 P37275-3;P37275-4;P37275-5;P37275;P37275-2 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 MTNS(1)PVLPVGSTTNGSR;MTNS(1)PVLPVGSTTNGSR ; 123.63 2.08E-05 198859000 210118 225818 215175 216933 255979 194142 232583 211032 204162 282598 TRUE FALSE FALSE 256858.0242 252225.4507 294777.1867 228783.5005 230492.832 204306.9749 182889.742 159276.0711 245135.4407 212151.5194 1.210729128 1.188892973 1.389465357 1.07839671 1.086453835 0.963023859 0.862071328 0.750765639 1.155473415 1 17.69473549 -5.837965031 1.538055872 0.924481391 1.250666059 0.562371449 0.115553405 0.268065887 1.316202657 0.043477106 0.055439253 1.45E-06 5.837965031 0.326184669 MTNSPVLPVGS(ph)TTNGSR ddPTM_HeLa_A485_30min_R1 1 MTNSPVLPVGSTTNGSR 17 0 P37275-3;P37275-4;P37275-5;P37275;P37275-2 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 MTNSPVLPVGS(0.25)T(0.25)T(0.25)NGS(0.25)R 92.211 0.00036291 0 87076 113530 99543 106260 139950 92797 117890 117020 90016 99905 TRUE FALSE FALSE 106445.7558 126806.3459 136368.098 112064.7147 126016.0866 97655.70743 92701.83843 88320.66152 108081.3855 75000.52212 1.419266864 1.690739509 1.818228649 1.494185795 1.680202791 1.302067035 1.236015908 1.177600622 1.441075108 1 16.19461302 -6.346802523 4.123564247 1.233331002 1.628853371 0.648439023 0.14378943 0.149107391 4.667386346 0.051082572 0.044974985 4.50E-07 6.346802523 0.395522369 MTPGNLGIVFGPTLLRPRPTEATVS(ph)LSSLVDYPHQAR ddPTM_HeLa_A485_30min_R1 1 MTPGNLGIVFGPTLLRPRPTEATVSLSSLVDYPHQAR 37 2 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 MT(0.016)PGNLGIVFGPT(0.054)LLRPRPT(0.054)EAT(0.054)VS(0.274)LS(0.274)S(0.274)LVDYPHQAR 44.894 0.015734 52866000 9787.2 10439 10643 8307.9 13159 12481 17946 16285 8602.5 12502 TRUE FALSE FALSE 11964.32887 11659.75024 14580.28859 8761.73954 11848.84376 13134.48586 14111.69049 12291.07822 10328.94284 9385.481482 1.274769856 1.242317751 1.553493938 0.933541828 1.2624652 1.399447208 1.503565962 1.309584195 1.100523491 1 13.19621504 -7.876315155 3.544746548 1.005560422 1.311468933 0.305847262 0.159712467 0.277022609 6.286887023 0.156445298 0.041832283 1.33E-08 7.876315155 0.305908511 MTPGNLGIVFGPTLLRPRPTEATVSLS(ph)SLVDYPHQAR ddPTM_HeLa_A486_30min_R1 1 MTPGNLGIVFGPTLLRPRPTEATVSLSSLVDYPHQAR 37 2 Q92619;K7EM85;K7ES98;Q92619-2;K7ES92;F5H1R4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 MTPGNLGIVFGPT(0.001)LLRPRPTEAT(0.001)VS(0.02)LS(0.953)S(0.025)LVDYPHQAR 179.54 2.25E-21 61100000 9401.8 12783 13016 5347.9 15743 11858 16382 16693 9818.7 10884 TRUE FALSE FALSE 8742.782371 11770.02853 18056.14378 12450.18147 13768.36614 10395.08052 12283.05033 12892.36831 10669.79282 8158.575557 1.071606472 1.442657293 2.213149055 1.526023922 1.687594366 1.274129344 1.505538589 1.580222946 1.307800945 1 12.99410157 -6.256805402 24.6642997 1.380552314 1.611384644 0.139952003 0.301988875 774.2130262 4120744.653 0.104556579 0.101248506 5.54E-07 6.256805402 0.23083233 MTS(ph)ERAPSPSSR ddPTM_HeLa_A485_30min_R1 1 MTSERAPSPSSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MT(0.119)S(0.729)ERAPS(0.135)PS(0.01)S(0.007)R 84.734 0.0025793 71758000 37414 134990 84430 23109 130220 142050 150480 376770 62258 36789 TRUE FALSE FALSE 45736.61522 150775.9062 115664.1704 24371.38615 117254.8396 149487.5183 118328.7187 284366.5667 74752.60954 27618.17935 1.656032957 5.459299265 4.187972312 0.882439999 4.245567316 5.412649272 4.284450368 10.29635455 2.70664509 1 14.7533306 -5.999285889 24.99776229 5.241073489 3.208282037 0.07265928 2.544726986 53.71405841 1880153.423 0.772097198 0.867928539 1.00E-06 5.999285889 -2.032791451 MTSERAPS(ph)PSSR ddPTM_HeLa_A485_30min_R1 8 MTSERAPSPSSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MTSERAPS(0.991)PS(0.007)S(0.001)R;MTSERAPS(0.967)PS(0.031)S(0.002)R;MT(0.004)S(0.023)ERAPS(0.424)PS(0.17)S(0.378)R;MTSERAPS(0.901)PS(0.092)S(0.007)R;MTSERAPS(0.93)PS(0.067)S(0.003)R;MTSERAPS(1)PSSR;MTS(0.002)ERAPS(0.825)PS(0.145)S(0.028)R;MT(0.001)S(0.003)ERAPS(0.964)PS(0.032)SR ;;;;;;; 166.04 1.07E-10 9096160000 1169721 4005836 2543630 776478 3457374 4055956 4526245 10562720 1843950 1133306 TRUE FALSE FALSE 1429921.401 4474283.674 3484624.586 818895.027 3113145.705 4268319.584 3559175.78 7972196.358 2214013.851 850793.6712 1.680691159 5.2589527 4.095734024 0.962507192 3.659107737 5.016868048 4.183359492 9.370305197 2.602292338 1 19.69844978 -6.172295498 4.502757437 4.942388644 3.145824429 0.055294001 2.314536836 0.514510714 18.30906207 0.764092766 0.761141257 6.73E-07 6.172295498 -1.796564215 MTSERAPS(ph)PSSR ddPTM_HeLa_A486_30min_R1 3 MTSERAPSPSSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MTSERAPS(0.999)PSSR;MTSERAPS(0.997)PS(0.003)SR;MT(0.012)S(0.012)ERAPS(0.943)PS(0.02)S(0.012)R ;; 112.67 0.00017081 1603110000 1000740 561668 588030 298848 1134470 495257 655510 859880 413275 649200 TRUE FALSE FALSE 930593.2938 517159.3821 815730.964 695733.2469 992174.1941 434157.2267 491494.4647 664104.095 449098.0098 486636.0944 1.912298131 1.062723025 1.676264817 1.429678676 2.038842177 0.892159936 1.00998358 1.364683185 0.922862104 1 18.89248381 -6.28272965 24.99254802 1.058983304 1.584893766 0.526245488 0.276415829 721.9298061 847467.2218 0.094640054 0.0835421 5.22E-07 6.28272965 0.525910462 MTTTSAAAYGT(ph)HLSPHVPHR ddPTM_HeLa_A485_30min_R1 1 MTTTSAAAYGTHLSPHVPHR 20 0 P16144-4;P16144-2;P16144-3;P16144;J3QRK0 P16144-4 ITGB4 Integrin beta-4 1 0 MTTTSAAAY(0.313)GT(0.412)HLS(0.276)PHVPHR 87.676 0.00025434 432770000 61309 113660 38185 40843 63913 114180 144720 182420 50725 79038 TRUE FALSE FALSE 74946.97554 126951.5483 52311.22051 43074.14967 57549.59731 120158.2882 113799.3897 137681.209 60905.04222 59335.28119 1.263109806 2.139562597 0.881620841 0.725944983 0.969905192 2.025073208 1.91790428 2.320393638 1.026455778 1 15.85660258 -6.259333304 24.97410032 1.756736165 1.204864369 0.148009495 0.527992253 322.0754889 3819224.023 0.184042745 0.175511577 5.50E-07 6.259333304 -0.551871796 MTTTSAAAYGTHLS(ph)PHVPHR ddPTM_HeLa_A485_30min_R1 4 MTTTSAAAYGTHLSPHVPHR 20 0 P16144-4;P16144-2;P16144-3;P16144;J3QRK0 P16144-4 ITGB4 Integrin beta-4 1 0 MTTTSAAAYGT(0.002)HLS(0.998)PHVPHR;MTTTSAAAYGT(0.015)HLS(0.985)PHVPHR;MTTTSAAAYGT(0.077)HLS(0.923)PHVPHR;MTTTSAAAYGT(0.302)HLS(0.698)PHVPHR ;;; 228.18 7.04E-36 2593030000 485876 794540 627557 446107 626936 641300 713570 761230 569133 879960 TRUE FALSE FALSE 593957.4399 887454.5414 859716.4491 470476.6958 564516.0505 674877.4764 561109.9402 574537.1489 683352.7727 660602.1665 0.899115186 1.343402408 1.301413306 0.712193692 0.854547683 1.021609541 0.849391614 0.869717325 1.034439194 1 19.33342218 -5.251204332 24.95009242 0.900873469 1.197519517 0.435921009 0.143084321 600.4955103 1463831.775 0.038502686 0.065743938 5.61E-06 5.251204332 0.296646048 MTTTSAAAYGTHLS(ph)PHVPHR ddPTM_HeLa_A486_30min_R1 4 MTTTSAAAYGTHLSPHVPHR 20 0 P16144-4;P16144-2;P16144-3;P16144;J3QRK0 P16144-4 ITGB4 Integrin beta-4 1 0 MTTTSAAAYGTHLS(1)PHVPHR;MTTTSAAAYGT(0.001)HLS(0.999)PHVPHR;MTTTSAAAYGTHLS(1)PHVPHR;MTTTSAAAYGT(0.004)HLS(0.996)PHVPHR ;;; 223.67 1.25E-35 2511470000 430561 492101 488320 122364.7 780720 466911 493889 485097 586084 575633 TRUE FALSE FALSE 400380.8973 453105.1246 677410.5817 284871.2056 682794.8177 409308.268 370312.7484 374651.0027 636886.233 431490.7501 0.927901461 1.050092324 1.569930715 0.660202346 1.582408934 0.94859106 0.858217119 0.868271226 1.476013641 1 18.71897011 MTWHVHCFTCAACK ddPTM_HeLa_A485_30min_R1 1 MTWHVHCFTCAACK 14 0 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 0 0 71.241 0.018357 19392000 25886 22655 24009 27582 33444 22848 33458 33429 23853 42303 FALSE FALSE TRUE 31644.25139 25304.30518 32890.9282 29088.73482 30114.19793 24044.28595 26309.42497 25230.48534 28640.07831 31757.64063 0.996429545 0.796794242 1.035685509 0.915960199 0.948250479 0.757118145 0.828443941 0.794469767 0.901832685 1 14.95481611 -6.225996308 24.75203052 0.841781678 0.934877788 0.180208515 0.084721886 797.138285 556689.8553 0.026497798 0.026496636 5.94E-07 6.225996308 0.09309611 MTWHVHCFTCAACKT(ph)PIR ddPTM_HeLa_A485_30min_R1 2 MTWHVHCFTCAACKTPIR 18 1 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 MTWHVHCFT(0.007)CAACKT(0.993)PIR;MTWHVHCFT(0.025)CAACKT(0.975)PIR ; 139.26 1.91E-06 936710000 740780 630900 631470 909980 1002860 689650 976470 1008210 666950 1372050 TRUE FALSE FALSE 905563.9553 704678.2669 865077.0307 959689.9032 903011.7371 725759.0076 767839.2075 760944.9167 800800.7474 1030023.186 0.879168516 0.684138257 0.839861707 0.931716797 0.87669069 0.704604535 0.745458178 0.738764843 0.777458953 1 19.97424538 -6.242857477 24.52696999 0.773942648 0.838358033 0.041698179 0.096751052 1672.795356 2207988.539 0.031780021 0.031724672 5.72E-07 6.242857477 0.064415385 MTWHVHCFTCAACKT(ph)PIR ddPTM_HeLa_A486_30min_R1 1 MTWHVHCFTCAACKTPIR 18 1 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 MTWHVHCFT(0.008)CAACKT(0.992)PIR 128.67 1.09E-05 846470000 354810 471770 304360 191300 487440 525410 716740 624380 373130 477990 TRUE FALSE FALSE 329939.6512 434385.227 422216.343 445356.0678 426300.73 460590.2562 537404.0711 482222.3041 405473.2088 358298.1928 0.920852122 1.212356735 1.178393728 1.242976037 1.189793135 1.285494221 1.499879379 1.345868647 1.131664119 1 18.45080124 -3.556664518 1.023129464 1.266674979 7.47E-10 0.332790795 0.127507266 7.524911258 2.261644964 0.040702729 14.74716584 0.000277546 3.556664518 -1.266674978 MVEPENAVTIT(ph)PLRPEDDYS(ph)PR ddPTM_HeLa_A485_30min_R1 1 MVEPENAVTITPLRPEDDYSPR 22 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JNZ2 SCRIB Protein scribble homolog 2 0 MVEPENAVT(0.18)IT(0.82)PLRPEDDY(0.002)S(0.998)PR 83.567 0.0024051 73177000 51477 63417 47922 56535 49944 64005 59521 70244 54863 107640 TRUE FALSE FALSE 62927.88106 70833.0665 65650.342 59623.3639 44971.4 67356.20283 46803.85211 53016.54886 65873.50087 80807.32897 0.778739773 0.876567353 0.812430541 0.737845993 0.556526253 0.833540765 0.579203059 0.656085896 0.815192158 1 16.30219853 -5.271335632 4.266157978 0.714115302 0.829886169 0.060453024 0.125601434 0.396956994 18.17196858 0.033724764 0.055339478 5.35E-06 5.271335632 0.115770868 MVEPENAVTITPLRPEDDYS(ph)PR ddPTM_HeLa_A485_30min_R1 8 MVEPENAVTITPLRPEDDYSPR 22 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR ;;;;;;; 212.83 7.39E-28 4734028000 1611005 1916052 1425758 1606129 1232478 1918555 1973804 1898032 1648543 3261645 TRUE FALSE FALSE 1969367.504 2140117.614 1953205.215 1693867.76 1109768.163 2019007.573 1552084.651 1432536.676 1979390.459 2448576.928 0.80429064 0.874025067 0.797689953 0.691776412 0.453229854 0.824563668 0.633872121 0.58504867 0.808384019 1 21.22351209 -5.170802776 3.911942549 0.686956769 0.837348808 0.097993265 0.142193621 0.404854643 11.37253338 0.03775411 0.068576014 6.75E-06 5.170802776 0.150392039 MVEPENAVTITPLRPEDDYS(ph)PR ddPTM_HeLa_A486_30min_R1 8 MVEPENAVTITPLRPEDDYSPR 22 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 MVEPENAVTITPLRPEDDY(0.001)S(0.999)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDYS(1)PR;MVEPENAVTITPLRPEDDY(0.001)S(0.999)PR;MVEPENAVTITPLRPEDDYS(1)PR ;;;;;;; 273.18 3.61E-73 3363834000 2158161 2483251 2556893 665637.9 3368990 2604580 2263501 2199735 3083825 3457472 TRUE FALSE FALSE 2006885.059 2286469.147 3546990.446 1549638.671 2946419.86 2283253.401 1697149.109 1698903.36 3351133.434 2591698.507 0.774351281 0.88222806 1.368596863 0.597923974 1.136868294 0.880987273 0.654840486 0.655517359 1.293025954 1 21.30546647 -6.502107953 24.41796024 0.857249743 0.957325489 0.000251186 0.257218273 2529.585921 2973766.233 0.089896949 0.078352306 3.15E-07 6.502107953 0.100075745 MVGRVQS(ph)KMHGKR ddPTM_HeLa_A486_30min_R1 1 MVGRVQSKMHGKR 13 3 U3KPW3 U3KPW3 FBF1 1 0 MVGRVQS(1)KMHGKR 48.177 0.020639 397420000 217170 351270 162240 480180 505230 542290 907300 788170 270530 718390 TRUE FALSE FALSE 201947.5045 323434.0859 225063.6729 1117883.307 441859.3423 475387.7734 680283.9436 608720.8966 293979.7582 538500.4681 0.375018252 0.600619879 0.417945176 2.075918914 0.820536598 0.882799183 1.263293133 1.13039994 0.545922939 1 19.03858807 MVIENDLSGLIDFTRLPS(ph)PTPENK ddPTM_HeLa_A486_30min_R1 1 MVIENDLSGLIDFTRLPSPTPENK 24 1 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 MVIENDLSGLIDFTRLPS(0.999)PTPENK 215.57 3.23E-38 47297000 71033 64472 56024 46427 79790 78577 89773 85071 72711 99657 TRUE FALSE FALSE 66053.95351 59363.00392 77717.99317 108084.4023 69781.99419 68882.96865 67310.84588 65702.19039 79013.64802 74702.23854 0.884229908 0.794661647 1.040370338 1.446869657 0.934135249 0.922100462 0.901055272 0.879521038 1.057714596 1 16.18886386 MVIQGPS(ph)SPQGEAMVTDVLEDQK ddPTM_HeLa_A485_30min_R1 4 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.659)S(0.341)PQGEAMVTDVLEDQK;MVIQGPS(0.632)S(0.368)PQGEAMVTDVLEDQK;MVIQGPS(0.76)S(0.24)PQGEAMVTDVLEDQK;MVIQGPS(0.63)S(0.37)PQGEAMVTDVLEDQK ;;; 250.95 8.96E-50 745600000 996016 861520 657931 1360358 876848 868823 1177080 952080 848506 1685320 TRUE FALSE FALSE 1217576.323 962267.2698 901327.0557 1434670.913 789545.9343 914313.2288 925587.2421 718580.8872 1018793.371 1265200.74 0.962358213 0.760564896 0.712398458 1.13394726 0.624047955 0.722662578 0.731573428 0.567958004 0.805242472 1 20.27093487 MVIQGPS(ph)SPQGEAMVTDVLEDQK ddPTM_HeLa_A486_30min_R1 3 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.664)S(0.336)PQGEAMVTDVLEDQK;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQK;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQK ;; 214.14 6.32E-30 217290000 230158 236587 126736 91531 165743 240100 255167 232622 188656 328524 TRUE FALSE FALSE 214025.1127 217838.9845 175811.5733 213088.7937 144953.9674 210478.9032 191321.5177 179659.0487 205008.854 246259.4521 0.869104154 0.884591364 0.713928224 0.865301989 0.588622959 0.854703856 0.776910353 0.72955189 0.832491311 1 17.90981957 -9.569566514 16.04655308 0.999999559 0.78703609 0.337839937 0.087830716 0 0 0.082485367 0.02000564 2.69E-10 9.569566514 -0.212963469 MVIQGPS(ph)SPQGEAMVTDVLEDQKEGR ddPTM_HeLa_A485_30min_R1 4 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.503)S(0.495)PQGEAMVT(0.002)DVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVT(0.001)DVLEDQKEGR;MVIQGPS(0.581)S(0.419)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.574)S(0.426)PQGEAMVTDVLEDQKEGR ;;; 125.02 5.34E-06 2642700000 606425 709606 626279 787400 985260 940920 1271510 1447600 721876 1129470 TRUE FALSE FALSE 741322.1491 792588.2489 857965.6637 830413.6682 887164.0549 990185.1163 999841.5012 1092573.83 866749.8918 847913.9154 0.874289401 0.934750845 1.01185468 0.979360821 1.046290241 1.167789676 1.179178078 1.288543342 1.022214491 1 19.69355828 -5.840250632 1.446670868 1.153731003 0.93538145 0.50398539 0.083732656 0.303638077 1.323622966 0.032074189 0.04128567 1.44E-06 5.840250632 -0.218349553 MVIQGPS(ph)SPQGEAMVTDVLEDQKEGR ddPTM_HeLa_A486_30min_R1 9 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.562)S(0.438)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.572)S(0.428)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.506)S(0.491)PQGEAMVT(0.003)DVLEDQKEGR;MVIQGPS(0.497)S(0.493)PQGEAMVT(0.01)DVLEDQKEGR;MVIQGPS(0.496)S(0.496)PQGEAMVT(0.007)DVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.569)S(0.431)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.584)S(0.416)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.552)S(0.445)PQGEAMVT(0.003)DVLEDQKEGR ;;;;;;;; 259.53 2.11E-62 10236653000 1982320 1822640 1317309 872596 2204837 2008131 2660082 2648455 1442189 2664135 TRUE FALSE FALSE 1843369.605 1678207.368 1827406.324 2031447.587 1928285.784 1760388.214 1994501.348 2045459.612 1567199.104 1997018.255 0.923060968 0.840356549 0.91506741 1.017240369 0.965582452 0.881508324 0.998739667 1.024256842 0.784769543 1 20.92941609 -5.002446947 24.73754379 0.954564873 0.880709546 0.142133722 0.071071837 153.5364139 1552262.702 0.018117148 0.036681147 9.94E-06 5.002446947 -0.073855327 MVIQGPSS(ph)PQGEAMVTDVLEDQK ddPTM_HeLa_A486_30min_R1 2 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.3)S(0.7)PQGEAMVTDVLEDQK;MVIQGPS(0.042)S(0.958)PQGEAMVTDVLEDQK ; 281.85 3.54E-75 486270000 626140 600180 346180 225447 453050 628060 674500 645780 483890 873500 TRUE FALSE FALSE 582250.8194 552619.551 480230.167 524852.0095 396224.2445 550576.3428 505732.9659 498749.9913 525833.9748 654769.9145 0.889244919 0.843990444 0.733433465 0.801582354 0.60513508 0.840869946 0.772382717 0.761717941 0.803082065 1 19.32062851 -8.181147917 4.951089362 0.999998919 0.778223085 0.443480436 0.073073683 2.704899963 73.35757259 0.071227621 0.018563537 6.59E-09 8.181147917 -0.221775835 MVIQGPSS(ph)PQGEAMVTDVLEDQKEGR ddPTM_HeLa_A485_30min_R1 15 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.218)S(0.782)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.007)S(0.993)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.15)S(0.85)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.299)S(0.701)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.461)S(0.537)PQGEAMVT(0.002)DVLEDQKEGR;MVIQGPS(0.114)S(0.886)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.331)S(0.669)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.056)S(0.944)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.006)S(0.994)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.003)S(0.997)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.004)S(0.996)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.024)S(0.976)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.047)S(0.953)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.004)S(0.996)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.013)S(0.987)PQGEAMVTDVLEDQKEGR ;;;;;;;;;;;;;; 243.86 6.72E-50 17074840000 3497357 4055995 3479643 4105212 5280000 5101790 7061220 8174860 3903957 6086070 TRUE FALSE FALSE 4275331.999 4530308.333 4766907.746 4329469.337 4754304.661 5368911.836 5552532.662 6169962.767 4687445.361 4568924.755 0.93574139 0.991548028 1.043332513 0.947590422 1.040574077 1.175093074 1.215282142 1.350418993 1.02594059 1 22.12342325 -6.161211724 3.279425001 1.180225945 0.98548621 0.405726851 0.096992565 0.226194827 4.623292422 0.032985838 0.032754748 6.90E-07 6.161211724 -0.194739735 MVIQGPSS(ph)PQGEAMVTDVLEDQKEGR ddPTM_HeLa_A486_30min_R1 13 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.216)S(0.784)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.177)S(0.822)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.044)S(0.956)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.011)S(0.989)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.333)S(0.645)PQGEAMVT(0.022)DVLEDQKEGR;MVIQGPS(0.004)S(0.996)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.145)S(0.854)PQGEAMVT(0.001)DVLEDQKEGR;MVIQGPS(0.291)S(0.709)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.374)S(0.626)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.031)S(0.969)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.149)S(0.851)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.146)S(0.854)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.211)S(0.789)PQGEAMVTDVLEDQKEGR ;;;;;;;;;;;; 255.56 2.85E-62 13547240000 4606744 3872490 2694531 1952671 4784736 4304381 5425955 5599352 3184775 5902165 TRUE FALSE FALSE 4283835.035 3565619.789 3737925.565 4545916.771 4184589.795 3773350.236 4068323.669 4324501.783 3460833.861 4424224.467 0.968268013 0.805931032 0.844877016 1.027505906 0.945835779 0.852883994 0.919556342 0.97745985 0.782246445 1 22.07699315 MVIQLRPGRS(ph)PEPDGPAPAFLR ddPTM_HeLa_A485_30min_R1 3 MVIQLRPGRSPEPDGPAPAFLR 22 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MVIQLRPGRS(1)PEPDGPAPAFLR;MVIQLRPGRS(1)PEPDGPAPAFLR;MVIQLRPGRS(1)PEPDGPAPAFLR ;; 161.51 4.58E-14 2818960000 416739 736493 747496 429524 847480 711650 772438 969640 624620 626577 TRUE FALSE FALSE 509441.1528 822619.4497 1024025.876 452987.8085 763101.9155 748910.8936 607400.3111 731834.2697 749975.5046 470382.8852 1.083035053 1.748829466 2.177004965 0.963019325 1.622299492 1.592130405 1.29128914 1.555826738 1.594393691 1 18.84347604 -10.93198453 2.393379498 0.639603452 1.524526014 0.182643222 0.325674 15310296.28 6878052.628 30803663.25 0.082272581 1.17E-11 10.93198453 0.884922562 MVIQLRPGRS(ph)PEPDGPAPAFLR ddPTM_HeLa_A486_30min_R1 2 MVIQLRPGRSPEPDGPAPAFLR 22 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MVIQLRPGRS(1)PEPDGPAPAFLR;MVIQLRPGRS(1)PEPDGPAPAFLR ; 183.69 7.44E-20 1427970000 529120 534690 554240 207195 682450 492730 608770 648340 461510 590600 TRUE FALSE FALSE 492031.4204 492319.2171 768856.5711 482360.4311 596850.7574 431941.9823 456449.3071 500727.1352 501514.0584 442709.9158 1.111408177 1.112058256 1.736705105 1.089563197 1.348175715 0.975677225 1.031034749 1.131050192 1.132827706 1 18.75600216 -6.257970847 24.78974602 1.060865908 1.285114332 0.27851176 0.181171043 386.258088 2760605.551 0.061578076 0.059285178 5.52E-07 6.257970847 0.224248424 MVISEPGLNWDIS(ph)PK ddPTM_HeLa_A486_30min_R1 1 MVISEPGLNWDISPK 15 0 Q659A1;H0YN09;H0YK14;H0YMX6;H0YL35;H0YK97;H0YNU9;Q659A1-2 Q659A1 ICE2 Little elongation complex subunit 2 1 0 MVISEPGLNWDIS(1)PK 127.75 2.30E-05 52600000 51727 48599 41878 29532 53289 46218 65887 51976 47045 75368 TRUE FALSE FALSE 48101.20442 44747.83825 58094.28313 68751.98846 46604.99672 40516.09307 49401.37572 40142.19943 51122.89848 56495.36224 0.851418639 0.792062153 1.028301808 1.216949246 0.824934913 0.71715786 0.874432409 0.71053973 0.90490434 1 15.78584482 -5.943517306 24.99991519 0.819338592 0.970527897 0.187864264 0.132428022 133.0326283 58880.9184 0.04277751 0.048505133 1.14E-06 5.943517306 0.151189305 MVMTVFACLMGR ddPTM_HeLa_A485_30min_R1 6 MVMTVFACLMGR 12 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2 P13797-3 PLS3 Plastin-3 0 0 ;;;;; ;;;;; 186.78 3.79E-09 118053000 148728.7 180623 187490.1 138276.5 217807 148926.5 212368 210718 119684.9 197523 FALSE FALSE TRUE 181812.8862 201745.2886 256850.4901 145830.1951 196121.3703 156724.0613 166993.8419 159039.0801 143704.5616 148284.1512 1.226111386 1.360531702 1.732150658 0.983450988 1.322605071 1.056917141 1.126174581 1.072529187 0.969116122 1 17.17800488 -5.795429382 1.149394901 1.048104219 1.406058105 0.417687367 0.171446495 0.479074977 1.342956086 0.072996971 0.104138606 1.60E-06 5.795429382 0.357953886 MVMTVFACLMGR ddPTM_HeLa_A486_30min_R1 4 MVMTVFACLMGR 12 0 P13797-3;P13797;A0A0A0MSQ0;P13797-2 P13797-3 PLS3 Plastin-3 0 0 ;;; ;;; 214.83 2.76E-20 66628000 105872.3 112496.4 108569.2 63990.1 147823 108692.6 143813 134568 93591.8 129070 FALSE FALSE TRUE 98451.1985 103581.7756 150610.1018 148972.1867 129281.6609 95283.21212 107829.4663 103929.804 101704.4126 96750.0319 1.017583112 1.070612314 1.556693046 1.539763696 1.336244117 0.984839077 1.11451608 1.074209506 1.051208052 1 16.56197452 -6.254548809 24.71199715 1.053940231 1.318319897 0.381785809 0.164241994 567.4555533 2035095.084 0.061514476 0.060220188 5.56E-07 6.254548809 0.264379666 MVNHFIAEFK ddPTM_HeLa_A485_30min_R1 3 MVNHFIAEFK 10 0 P11142;E9PKE3;P11142-2;E9PN89;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 106.62 0.0031669 233887000 271128 273857 232375 297321 338562 320344 400416 453337 257973 416161 FALSE FALSE TRUE 331439.4882 305882.1939 318340.1824 313562.8934 304853.5785 337116.7165 314863.8505 342155.3899 309745.8148 312419.7216 1.060878892 0.979074536 1.018950343 1.00365909 0.975782121 1.079050691 1.007823222 1.095178589 0.9914413 1 18.253126 -6.251099011 24.96704404 1.038967702 1.006484387 0.107633851 0.037854464 1317.730043 3181689.75 0.011654335 0.011555454 5.61E-07 6.251099011 -0.032483316 MVNHFIAEFK ddPTM_HeLa_A486_30min_R1 3 MVNHFIAEFK 10 0 P11142;E9PKE3;P11142-2;E9PN89;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 125.74 0.00038646 285613000 804249 791648 556049 376094.5 1113676 860914 955758 987119 720139 1056419 FALSE FALSE TRUE 747875.2982 728914.9293 771366.0643 875567.0028 973988.3715 754703.1838 716617.2394 762373.5524 782561.2283 791884.8063 0.944424356 0.920481014 0.974088729 1.105674709 1.229962191 0.953046678 0.904951369 0.962732895 0.988226093 1 19.59493105 -9.899137727 15.83074246 1 1.00005005 0 0.093220734 0 0 0.100848816 0.024459431 1.26E-10 9.899137727 5.00E-05 MVNHFIAEFK(ac)R ddPTM_HeLa_A485_30min_R1 2 MVNHFIAEFKR 11 1 P11142;E9PKE3;P11142-2;E9PN89;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 ; MVNHFIAEFK(1)R;MVNHFIAEFK(1)R 142.07 0.0015935 38990000 39209 46086 52617 41501 51302 41558 52252 54968 36563 56627 FALSE TRUE FALSE 47930.90678 51475.35681 72082.21788 43768.09454 46194.19275 43733.91262 41087.93334 41487.01181 43900.85872 42510.93104 1.127496049 1.210873428 1.695616071 1.029572712 1.086642697 1.028768638 0.966526311 0.975913978 1.032695771 1 15.37554624 -5.468293773 24.99964056 1.016320825 1.33650187 0.531927971 0.140774919 244.2151485 111848.9692 0.040005503 0.059337392 3.40E-06 5.468293773 0.320181045 MVNHFIAEFK(ac)R ddPTM_HeLa_A486_30min_R1 1 MVNHFIAEFKR 11 1 P11142;E9PKE3;P11142-2;E9PN89;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 MVNHFIAEFK(1)R 117.25 0.0069913 14922000 22673 25472 25769 8751 29867 21658 28228 26594 20029 27769 FALSE TRUE FALSE 21083.73978 23453.50595 35747.44692 20372.77025 26120.80236 18986.05616 21165.05583 20539.12674 21765.12985 20815.46165 1.012888406 1.126734845 1.717350665 0.978732569 1.254874996 0.912113143 1.016794928 0.986724536 1.045623211 1 14.34536794 -6.006905 1.850296366 0.995479154 1.249520748 0.226728759 0.195814994 0.513930258 3.548963362 0.074403219 0.081507472 9.84E-07 6.006905 0.254041594 MVNHFIAEFKR ddPTM_HeLa_A485_30min_R1 2 MVNHFIAEFKR 11 1 P11142;E9PKE3;P11142-2;E9PN89;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 111.63 0.0010691 28541000 43422 62119 44148 38055 64700 71105 78147 104272 46677 56707 FALSE FALSE TRUE 53081.0741 69383.27669 60480.18235 40133.84829 58258.24082 74827.94785 61450.25505 78699.12851 56044.64575 42570.98851 1.246883757 1.62982536 1.42069011 0.942751148 1.368496313 1.757721642 1.443477288 1.848656356 1.316498576 1 15.37758297 -6.020170955 24.71041918 1.528745195 1.317638397 0.056736409 0.272082913 1471.835387 1803069.77 0.087413251 0.088561105 9.55E-07 6.020170955 -0.211106798 MVQEAEK ddPTM_HeLa_A485_30min_R1 2 MVQEAEK 7 0 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 P11142;A0A0G2JIW1 HSPA8;HSPA1B;HSPA1A Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 130.27 0.0067597 72268000 139925 141294 135073 160926 203545 140422 177542 169363 130598 196600 FALSE FALSE TRUE 171050.8335 157817.1042 185042.1236 169716.9799 183279.3451 147774.2788 139608.7013 127826.4587 156807.8207 147591.2382 1.158949784 1.069285048 1.253747349 1.149912298 1.241803696 1.001240186 0.945914561 0.866084331 1.062446678 1 17.17124755 -6.389458691 4.996266746 0.959622547 1.171249122 0.692430799 0.066550252 0.127734463 4.659365945 0.023662953 0.020684312 4.08E-07 6.389458691 0.211626575 MVQSIDFQT(ph)EMS(ph)RS(ph)LDWLRRVK ddPTM_HeLa_A486_30min_R1 1 MVQSIDFQTEMSRSLDWLRRVK 22 3 Q8NF91;Q8NF91-4;A0A0C4DG40;E7ENN3;Q8NF91-7 Q8NF91 SYNE1 Nesprin-1 3 0 MVQS(0.001)IDFQT(1)EMS(1)RS(1)LDWLRRVK 60.621 0.011393 861170000 296930 433880 402420 32088 546350 279180 240470 292270 372940 86375 TRUE FALSE FALSE 276116.7403 399497.7686 558247.8012 74702.48564 477821.6885 244737.6101 180301.8626 225726.5012 405266.7395 64746.13779 4.264605577 6.17021775 8.622101954 1.153775162 7.379925734 3.779956897 2.784750855 3.486331523 6.259319139 1 15.98250652 -8.56271921 0.195754109 5.95E-11 6.470589069 0.228371136 2.136580258 10.91335491 1.064997237 20.69923589 8.688154018 2.74E-09 8.56271921 6.470589069 MVS(ph)PLRR ddPTM_HeLa_A485_30min_R1 2 MVSPLRR 7 1 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 MVS(1)PLRR;MVS(1)PLRR ; 68.371 0.013214 246860000 42834 52465 55509 43933 66577 54190 56271 60587 52666 59888 TRUE FALSE FALSE 52362.27552 58600.32537 76044.08902 46332.94855 59948.36011 57027.30461 44248.24116 45727.94325 63235.58312 44959.02376 1.164666649 1.303416322 1.691408813 1.030559489 1.333399952 1.268428445 0.984190435 1.017102673 1.40651593 1 15.45632309 -6.610119942 7.012673311 1.104183338 1.309893936 0.202245796 0.19224983 0.371985914 25.15385562 0.073913502 0.05704299 2.45E-07 6.610119942 0.205710598 MVS(ph)PLRR ddPTM_HeLa_A486_30min_R1 2 MVSPLRR 7 1 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 MVS(1)PLRR;MVS(1)PLRR ; 77.318 0.0087928 263220000 79850 91378 78058 24833.2 105901 82282 87828 88461 81954 87975 TRUE FALSE FALSE 74252.92735 84136.87449 108284.1481 57812.9446 92617.90909 72130.88342 65852.50545 68320.36139 89057.83871 65945.48738 1.125974351 1.275854919 1.642025139 0.876677797 1.404461666 1.093795592 0.998590018 1.036012684 1.350476617 1 16.00898632 -5.78902097 1.208373996 1.102885933 1.302159473 0.115905044 0.208241344 0.991218843 3.057087752 0.08578409 0.121348868 1.63E-06 5.78902097 0.199273539 MVSQS(ph)QPGS(ph)R ddPTM_HeLa_A485_30min_R1 1 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 MVS(0.028)QS(0.972)QPGS(1)R 71.558 0.027107 1657500000 2590400 3528800 3543000 2279000 4163100 3071400 3847000 4469100 3036900 2949900 TRUE FALSE FALSE 3166625.543 3941462.464 4853703.137 2403495.999 3748607.146 3232213.755 3025057.023 3373046.218 3646377.974 2214544.219 1.42992202 1.779807524 2.191739092 1.085323101 1.692721741 1.459539045 1.365995313 1.523133378 1.646559117 1 21.07857837 -11.96624185 0.15489624 1.03E-12 1.777304337 0.287242082 0.274784918 84.3764334 1.381107812 30.18138669 1.442186455 1.08E-12 11.96624185 1.777304337 MVSQS(ph)QPGS(ph)R ddPTM_HeLa_A486_30min_R1 2 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 2 0 MVS(0.086)QS(0.914)QPGS(1)R;MVS(0.139)QS(0.861)QPGS(1)R ; 123.28 0.00026572 4209100000 7332600 8738100 8126100 2910700 9746100 7139700 8523900 8574300 6397300 7526700 TRUE FALSE FALSE 6818622.606 8045661.132 11272743.54 6776256.699 8523653.259 6258876.405 6391130.063 6622119.066 6951823.115 5641965.329 1.208554503 1.426038741 1.99801716 1.201045434 1.510759596 1.109343294 1.132784356 1.173725587 1.232163388 1 22.42776637 -6.261278452 24.99985495 1.140659979 1.481019322 0.386784242 0.213098751 16.38152727 2544968.252 0.073667995 0.069291261 5.48E-07 6.261278452 0.340359344 MVSQSQPGS(ph)R ddPTM_HeLa_A485_30min_R1 4 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 MVSQSQPGS(1)R;MVSQSQPGS(1)R;MVSQSQPGS(1)R;MVSQSQPGS(1)R ;;; 151.55 3.34E-06 1526440000 966790 1585210 1501880 1094160 1616260 1390280 1375980 1649360 1466970 1551540 TRUE FALSE FALSE 1181849.1 1770586.52 2057487.91 1153931.19 1455339.479 1463072.911 1081990.632 1244851.874 1761377.423 1164769.632 1.014663387 1.520117345 1.766433339 0.990694777 1.249465508 1.256104959 0.928931011 1.068753717 1.512210977 1 20.15161322 -5.283852939 24.99603674 1.14673909 1.442376052 0.24293509 0.234410462 1090.814798 1216495.23 0.066333164 0.098469705 5.20E-06 5.283852939 0.295636962 MVSQSQPGS(ph)R ddPTM_HeLa_A486_30min_R1 4 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 MVSQSQPGS(1)R;MVSQSQPGS(1)R;MVSQSQPGS(1)R;MVSQSQPGS(1)R ;;; 151.55 3.34E-06 2182180000 1099850 1120960 915760 300064 1215780 943070 965460 1021280 919460 1059360 TRUE FALSE FALSE 1022756.195 1032131.047 1270366.797 698564.1564 1063285.536 826723.6118 723891.6964 788756.8384 999159.5331 794089.3607 1.287961085 1.299766875 1.599778135 0.879704717 1.338999851 1.041096447 0.911599792 0.993284733 1.258245712 1 19.59894184 -5.264529003 24.99977355 1.06474061 1.386228514 0.492592505 0.155866835 233.3037899 1887786.73 0.043392417 0.067561169 5.44E-06 5.264529003 0.321487904 MVTGNGS(ph)LKR ddPTM_HeLa_A486_30min_R1 1 MVTGNGSLKR 10 1 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1;P52701-4 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 MVTGNGS(1)LKR 100.38 0.0009646 226820000 158810 157700 97891 81598 165690 176600 212770 226010 159410 273730 TRUE FALSE FALSE 147678.2391 145203.2777 135797.0168 189964.2677 144907.6152 154812.8875 159532.6955 174552.4568 173227.7872 205186.2263 0.719727838 0.707665813 0.661823258 0.925813936 0.706224866 0.754499414 0.777501972 0.850702603 0.844246664 1 17.64657436 -13.99999999 0.095023178 1.790610345 0.589526573 0.6002705 0.064946232 138.1141005 0.900933558 21.50059389 1.304350646 1.00E-14 13.99999999 -1.201083771 MVVNEGSDGGQSVYHVHLHVLGGR ddPTM_HeLa_A485_30min_R1 4 MVVNEGSDGGQSVYHVHLHVLGGR 24 0 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 ;;; ;;; 212.18 2.32E-42 717346000 267392.5 376745 445065 139503.9 446591 359225 455770 527154 301276 296291 FALSE FALSE TRUE 326873.0391 420802.0505 609713.0642 147124.6448 402126.832 378033.4655 358391.0162 397868.655 361739.3297 222431.1065 1.469547332 1.891830945 2.741132181 0.661439162 1.807871382 1.69955305 1.611245036 1.78872758 1.626298297 1 17.76299903 -11.46277036 0.278712323 1.85E-13 1.775363066 0.163332045 0.477569242 84.62466814 2.868608051 52.9937925 0.581461039 3.45E-12 11.46277036 1.775363066 MVVNEGSDGGQSVYHVHLHVLGGR ddPTM_HeLa_A486_30min_R1 5 MVVNEGSDGGQSVYHVHLHVLGGR 24 0 P49773 P49773 HINT1 Histidine triad nucleotide-binding protein 1 0 0 ;;;; ;;;; 180.13 2.18E-27 557073000 222206.7 229202.8 310344 18815.1 377281.4 228656 263378.7 238210.3 266702 159230.1 FALSE FALSE TRUE 206631.1578 211039.9354 430517.5081 43802.50366 329959.2488 200446.7475 197478.5635 183975.0148 289819.9441 119357.8465 1.731190397 1.768127873 3.606947683 0.366984701 2.764453769 1.679376374 1.654508432 1.541373442 2.428159962 1 16.86493389 -11.09747025 0.290696461 2.89E-19 2.025114459 0.102934748 0.812685324 83.45959413 3.508934209 58.52705179 0.877599044 7.99E-12 11.09747025 2.025114459 MVVS(ph)AGPWSSEKAEMNILEINETLR ddPTM_HeLa_A485_30min_R1 1 MVVSAGPWSSEKAEMNILEINETLR 25 1 A0A075B7F7;A0A087X230;A0A087WV19;A0A087WUR2;A0A087WVE3;A0A087X002;A0A087WYI5;A0A075B757;A0A087WZJ2;A0A087WVU4;A0A075B762;A0A087WUL8 A0A075B7F7 NBPF14;NBPF19;NOTCH2NL;NBPF10 1 0 MVVS(0.792)AGPWS(0.104)S(0.104)EKAEMNILEINETLR 52.122 0.022406 2200000000 61357 430050 828770 25044 380230 191140 171200 142610 367010 70375 TRUE FALSE FALSE 75005.65297 480340.6066 1135366.511 26412.09031 342372.9661 201147.7948 134621.7214 107634.6739 440665.5406 52831.80766 1.419706353 9.091882861 21.49020754 0.499927818 6.480432552 3.807323727 2.548118783 2.03730818 8.340913554 1 15.68911915 MVVS(ph)IAEDLLR ddPTM_HeLa_A485_30min_R1 1 MVVSIAEDLLR 11 0 Q9P2D3;Q9P2D3-2;Q9P2D3-3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 0 MVVS(1)IAEDLLR 64.39 0.036411 1088900000 341860 480280 451550 307020 539260 479000 509020 609230 418920 442120 TRUE FALSE FALSE 417905.5776 536444.5681 618597.1356 323791.7252 485569.3809 504079.6993 400263.7187 459815.3873 502993.4014 331907.6206 1.259102086 1.616246614 1.863762978 0.975547728 1.462965448 1.518734937 1.205949167 1.385371587 1.515462045 1 18.34042223 -12.5482671 0.216768143 5.64E-14 1.48790782 0.225863993 0.230654853 115.9791174 2.040968497 52.59919794 0.48288908 2.83E-13 12.5482671 1.48790782 MVVS(ph)IAEDLLR ddPTM_HeLa_A486_30min_R1 2 MVVSIAEDLLR 11 0 Q9P2D3;Q9P2D3-2;Q9P2D3-3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 0 MVVS(1)IAEDLLR;MVVS(1)IAEDLLR ; 68.525 0.02115 952143000 406988 422993 395831 154471 577405 395529 470530 484653 375742 421153 TRUE FALSE FALSE 378460.2429 389473.4942 549107.3639 359616.2945 504981.4808 346732.6534 352798.4172 374308.0918 408311.6191 315693.5476 1.198821597 1.23370749 1.739368347 1.139130962 1.599593925 1.098320368 1.117534457 1.185669123 1.293379679 1 18.26816525 -6.293713191 24.95131272 1.149244625 1.380226382 0.303716866 0.183734056 867.2307307 670464.8679 0.063019164 0.055582518 5.08E-07 6.293713191 0.230981757 MVVS(ph)MPNLQDIAMPELAPR ddPTM_HeLa_A485_30min_R1 2 MVVSMPNLQDIAMPELAPR 19 0 H0YAY3;E9PF32;A2RUS2-2;A2RUS2 H0YAY3 DENND3 DENN domain-containing protein 3 1 0 MVVS(1)MPNLQDIAMPELAPR;MVVS(1)MPNLQDIAMPELAPR ; 243.23 1.01E-45 490170000 83840 103903 125111 80315 117623 100297 135156 144533 98021 109980 TRUE FALSE FALSE 102489.9188 116053.552 171394.7652 84702.40508 105912.0411 105548.3958 106278.8165 109086.0551 117692.9156 82564.01003 1.241338917 1.405619131 2.075901657 1.025899845 1.282787029 1.278382624 1.287229344 1.321230099 1.425474799 1 16.33322542 MVVS(ph)MPNLQDIAMPELAPR ddPTM_HeLa_A486_30min_R1 2 MVVSMPNLQDIAMPELAPR 19 0 H0YAY3;E9PF32;A2RUS2-2;A2RUS2 H0YAY3 DENND3 DENN domain-containing protein 3 1 0 MVVS(1)MPNLQDIAMPELAPR;MVVS(1)MPNLQDIAMPELAPR ; 203.81 1.33E-25 450730000 83326 97164 87106 33708 98177 85040 96095 88110 79774 86849 TRUE FALSE FALSE 77485.2777 89464.37077 120835.776 78473.92751 85862.7252 74548.62942 72051.01461 68049.27643 86688.87455 65101.44511 1.19022362 1.374230182 1.85611511 1.205409916 1.318906593 1.145114817 1.10674985 1.045280582 1.331596778 1 15.99040195 -5.843289246 1.79851783 1.130737383 1.454269028 0.347309603 0.186895037 0.394321995 2.628322534 0.06842305 0.084841017 1.43E-06 5.843289246 0.323531645 MWFS(ph)PR ddPTM_HeLa_A485_30min_R1 3 MWFSPR 6 0 A0A494C142;Q99728-3;Q99728-2;Q99728;A0A087X2H0 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 MWFS(1)PR;MWFS(1)PR;MWFS(1)PR ;; 95.352 0.013849 320077000 303954 415160 405590 282044 463290 372860 410210 474410 321081 361330 TRUE FALSE FALSE 371567.5187 463709.3506 555634.619 297451.3495 417163.2209 392382.373 322565.2824 358060.2037 385519.0116 271257.0808 1.369798413 1.709482935 2.048369087 1.096566212 1.537888779 1.4465332 1.189149723 1.320003159 1.421231145 1 18.04930127 -6.876338188 0.211126558 0.924975407 1.826198878 0.332309999 0.236782505 3.834132574 0.639669261 0.852509918 1.300635189 1.33E-07 6.876338188 0.901223471 MWFS(ph)PR ddPTM_HeLa_A486_30min_R1 4 MWFSPR 6 0 A0A494C142;Q99728-3;Q99728-2;Q99728;A0A087X2H0 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 MWFS(1)PR;MWFS(1)PR;MWFS(1)PR;MWFS(1)PR ;;; 92.187 0.015019 364589000 491671 496290 458620 163570 558170 411736 469883 483330 381532 447073 TRUE FALSE FALSE 457207.4019 456962.1729 636209.9463 380799.2264 488159.1139 360940.1985 352313.3035 373286.31 414603.501 335123.0108 1.364297249 1.363565491 1.898437068 1.136296864 1.456656505 1.077037944 1.051295471 1.11387848 1.237168107 1 18.35433123 -5.982838718 1.466386572 1.09850091 1.49475671 0.449319024 0.189006544 0.372758552 1.646604701 0.075906118 0.086120038 1.04E-06 5.982838718 0.3962558 MWMT(ph)PK ddPTM_HeLa_A485_30min_R1 1 MWMTPK 6 0 Q7L775 Q7L775 EPM2AIP1 EPM2A-interacting protein 1 1 0 MWMT(1)PK 50.966 0.024489 352640000 107180 329930 495380 53984 183380 299720 151700 235780 334310 70116 TRUE FALSE FALSE 131021.8212 368512.4435 678641.6765 56933.00923 165122.0433 315412.8757 119288.0557 177954.5853 401402.9505 52637.37159 2.489140648 7.000965899 12.89277287 1.081608133 3.136973567 5.992185138 2.266223638 3.380765033 7.625816761 1 15.68379983 -5.297206582 24.99814141 3.634453004 7.414969332 0.264013354 3.026098219 815.5514717 569997.3457 0.855447734 1.268882154 5.04E-06 5.297206582 3.780516328 MWMT(ph)PK ddPTM_HeLa_A486_30min_R1 2 MWMTPK 6 0 Q7L775 Q7L775 EPM2AIP1 EPM2A-interacting protein 1 1 0 MWMT(1)PK;MWMT(1)PK ; 50.966 0.011742 1061100000 459120 990130 2303440 112270 1646440 488780 388380 547430 796210 346290 TRUE FALSE FALSE 426938.0589 911668.4928 3195393.656 261370.2338 1439928.143 428479.2932 291203.2161 422792.1393 865226.1239 259576.73 1.644747042 3.5121349 12.31001583 1.00690934 5.547215818 1.650684532 1.12183868 1.628775196 3.333219136 1 17.98580153 -6.267364989 23.73012619 1.747135078 4.938451642 0.211968746 2.941744888 393.9773304 1577743.145 1.032844079 0.936041233 5.40E-07 6.267364989 3.191316564 MWT(ph)Y(ph)VY(ph)PAK ddPTM_HeLa_A486_30min_R1 1 MWTYVYPAK 9 0 O15014 O15014 ZNF609 Zinc finger protein 609 3 0 MWT(1)Y(1)VY(1)PAK 44.188 0.0087788 0 146730 146990 91782 69083 150120 154450 184530 167090 106370 173730 TRUE FALSE FALSE 136444.9847 135341.9771 127322.4484 160828.7153 131290.5498 135395.5293 138358.6422 129047.2545 115590.2372 130226.8772 1.047748265 1.039278373 0.977697163 1.23498865 1.008167842 1.039689596 1.062443063 0.990941788 0.887606612 1 16.99066771 -7.436409337 3.670025903 0.941875437 1.058638348 0.314101151 0.069027766 0.278737369 6.935307374 0.044117958 0.018281904 3.66E-08 7.436409337 0.116762911 MWVQLLIPR ddPTM_HeLa_A485_30min_R1 2 MWVQLLIPR 9 0 K7EMD0;K7EPX6;K7EKR3;B3KQ25;K7ESG5;P61289;P61289-3;P61289-2 K7EMD0 PSME3 Proteasome activator complex subunit 3 0 0 ; ; 157.52 1.45E-05 24758000 19896.4 28037 33017 24213 39301 22617 30368 29456 24605 34440 FALSE FALSE TRUE 24322.28554 31315.68326 45231.36225 25535.69488 35388.05445 23801.19115 23879.62872 22231.86981 29542.99781 25854.74182 0.940728231 1.211216243 1.749441652 0.987660022 1.368725888 0.920573538 0.923607317 0.859875916 1.142652981 1 14.65814128 -6.269545672 24.79801073 0.957725766 1.262313003 0.292669282 0.218674207 695.2983477 2126984.907 0.076679881 0.068800338 5.38E-07 6.269545672 0.304587237 MWVQLLIPR ddPTM_HeLa_A486_30min_R1 2 MWVQLLIPR 9 0 K7EMD0;K7EPX6;K7EKR3;B3KQ25;K7ESG5;P61289;P61289-3;P61289-2 K7EMD0 PSME3 Proteasome activator complex subunit 3 0 0 ; ; 139.28 0.00070871 18338800 26250 28328.9 31167 10658.7 40936 25580 31827 31841 27706.8 29370 FALSE FALSE TRUE 24410.01056 26084.01479 43235.69708 24813.99226 35801.42517 22424.19968 23863.54797 24591.49938 30108.44773 22015.56083 1.108761695 1.184799015 1.963869892 1.127111521 1.626187288 1.018561364 1.083940044 1.117005357 1.367598489 1 14.42623598 -6.276645305 24.86639081 1.122641319 1.40599827 0.234158655 0.257326178 1195.587831 1955149.863 0.090060741 0.079730598 5.29E-07 6.276645305 0.283356951 MY(ph)SLDRIFAGFRT(ph)RS(ph)QMLLGHIEEQDK ddPTM_HeLa_A486_30min_R1 1 MYSLDRIFAGFRTRSQMLLGHIEEQDK 27 3 Q86VH2-4 Q86VH2-4 3 0 MY(0.658)S(0.472)LDRIFAGFRT(0.938)RS(0.932)QMLLGHIEEQDK 40.328 0.024021 1249900000 396770 427810 129110 587150 334410 810680 878810 898540 288820 1546900 TRUE FALSE FALSE 368958.4719 393908.7775 179104.8497 1366914.873 292465.1796 710666.544 658922.4429 693962.057 313855.1501 1159546.171 0.318192135 0.339709437 0.154461163 1.178836088 0.252223833 0.612883352 0.56825891 0.598477296 0.27067068 1 20.14512884 -14 0.25089931 4.023359136 0.444713645 0.231112116 0.280242386 285.5440153 2.832244635 444.6953559 0.399422339 1.00E-14 14 -3.578645491 MYEEHLKR ddPTM_HeLa_A485_30min_R1 2 MYEEHLKR 8 1 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 0 ; ; 163.99 4.83E-05 400836000 115013 119332 88235 101451 154179 156516 173988 209719 108326 133530 FALSE FALSE TRUE 140597.2451 133286.8393 120876.7983 106993.0112 138828.3974 164710.9357 136814.0424 158285.0864 130066.0346 100243.4284 1.402558225 1.329631692 1.205832643 1.067331923 1.384912703 1.643109561 1.364818069 1.579007112 1.297501857 1 16.61314814 -5.978322641 24.97974089 1.42361988 1.250235719 0.076323466 0.183321963 420.5458269 484610.3037 0.054952939 0.062306126 1.05E-06 5.978322641 -0.173384161 MYEEHLKR ddPTM_HeLa_A486_30min_R1 1 MYEEHLKR 8 1 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 0 143.73 0.0004937 168270000 111310 107650 76022 54029 134860 113340 132860 131260 95375 142310 FALSE FALSE TRUE 103507.7438 99119.42195 105459.7543 125782.2425 117944.6013 99357.26316 99617.02275 101374.9634 103642.1818 106674.6497 0.970312479 0.92917504 0.988611208 1.179120277 1.105647889 0.931404635 0.933839699 0.950319159 0.971572741 1 16.70285785 -6.286486679 24.84824553 0.952847967 1.034194855 0.240326286 0.068336202 1199.053712 1189521.33 0.027521974 0.024282708 5.17E-07 6.286486679 0.081346888 MYFPDVEFDIKS(ph)PK ddPTM_HeLa_A485_30min_R1 4 MYFPDVEFDIKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK ;;; 170.16 1.89E-12 2430130000 884980 550471 294414 1473708 833458 650142 1215970 1130365 426763 2014675 TRUE FALSE FALSE 1081840.748 614843.795 403329.9902 1554212.936 750475.9951 684182.4298 956168.0759 853141.2114 512410.4196 1512453.6 0.715288554 0.406520765 0.266672637 1.027610326 0.496197698 0.452365897 0.632196635 0.56407761 0.338794142 1 20.52845945 -10.1438385 4.0513749 1.000142518 0.545435717 0.307831615 0.204941614 88656925.63 136423920.7 168262.1801 0.050056529 7.18E-11 10.1438385 -0.454706802 MYFPDVEFDIKS(ph)PK ddPTM_HeLa_A486_30min_R1 3 MYFPDVEFDIKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK ;; 228.39 2.12E-28 2656500000 2879740 2463230 953700 2947470 2038450 3160560 4831280 3814840 1511520 5916350 TRUE FALSE FALSE 2677885.097 2268034.684 1322998.181 6861859.117 1782768.593 2770642.241 3622442.644 2946284.209 1642539.771 4434857.451 0.603826645 0.511410955 0.298318085 1.547255846 0.401990056 0.624742119 0.816811517 0.664346992 0.370370364 1 22.0804563 MYLQQDELEEEEDERGPT(ph)PPVR ddPTM_HeLa_A485_30min_R1 4 MYLQQDELEEEEDERGPTPPVR 22 1 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;Q9Y6N7-6;H7C545;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 MYLQQDELEEEEDERGPT(1)PPVR;MYLQQDELEEEEDERGPT(1)PPVR;MYLQQDELEEEEDERGPT(1)PPVR;MYLQQDELEEEEDERGPT(1)PPVR ;;; 185.68 1.68E-19 2211810000 929700 1090720 726410 1039290 709320 975520 1192000 1147730 928160 1870500 TRUE FALSE FALSE 1136508.558 1218270.216 995139.2874 1096063.781 638697.6102 1026596.719 937319.4623 866247.4179 1114433.198 1404218.774 0.809352915 0.867578641 0.708678239 0.780550582 0.454841953 0.731080326 0.667502443 0.616889216 0.793632174 1 20.42133629 -9.801515349 7.966293365 1.000000001 0.70933651 0.373375404 0.110796369 1.69E-10 0 0.1113078 0.026996107 1.58E-10 9.801515349 -0.290663491 MYLQQDELEEEEDERGPT(ph)PPVR ddPTM_HeLa_A486_30min_R1 2 MYLQQDELEEEEDERGPTPPVR 22 1 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;Q9Y6N7-6;H7C545;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 MYLQQDELEEEEDERGPT(1)PPVR;MYLQQDELEEEEDERGPT(1)PPVR ; 163.76 1.05E-13 495120000 315250 356950 385420 94257 555410 414650 351750 327870 456810 515340 TRUE FALSE FALSE 293152.603 328663.982 534664.9459 219435.0595 485745.2988 363494.6989 263738.4296 253221.1584 496406.6586 386295.5097 0.758881725 0.85080974 1.384082736 0.568049729 1.257444849 0.940975729 0.682737497 0.655511524 1.285043823 1 18.55934538 -7.776844674 24.99981614 1.1425218 0.899319326 0.137993203 0.253727278 579.4494371 940307.2342 0.237007244 0.062101284 1.67E-08 7.776844674 -0.243202473 MYPESTTGS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 MYPESTTGSPAR 12 0 A0A590UJ15;A0A590UJK5;A0A5F9UN28;A0A590UJJ4;K7EKU4;K7EIR5;A0A590UJU4;Q5TG84;A0A590UJU1;A0A590UJY1;A0A590UK89;Q5TG78;A0A590UJX9;A0A590UJV4;A0A590UJ72;A0A590UJI8;Q13303-2;Q13303;Q13303-5 A0A590UJ15 KCNAB2 Voltage-gated potassium channel subunit beta-2 1 0 MYPESTTGS(1)PAR;MYPESTTGS(1)PAR;MYPESTTGS(1)PAR;MYPESTTGS(1)PAR ;;; 202.92 4.08E-17 3048180000 1035760 1462850 1374180 1075960 1561970 1353260 1575110 1709990 1207330 1507250 TRUE FALSE FALSE 1266161.239 1633917.582 1882546.366 1134736.97 1406454.782 1424114.601 1238574.881 1290612.271 1449630.057 1131520.314 1.118991169 1.444001988 1.663731833 1.002842774 1.242977934 1.258585094 1.094611264 1.140600178 1.281134805 1 20.10983105 -5.27522726 24.99858347 1.158292948 1.412417719 0.379149553 0.153676786 825.9065684 1497435.944 0.043170141 0.064418992 5.31E-06 5.27522726 0.254124771 MYPESTTGS(ph)PAR ddPTM_HeLa_A486_30min_R1 5 MYPESTTGSPAR 12 0 A0A590UJ15;A0A590UJK5;A0A5F9UN28;A0A590UJJ4;K7EKU4;K7EIR5;A0A590UJU4;Q5TG84;A0A590UJU1;A0A590UJY1;A0A590UK89;Q5TG78;A0A590UJX9;A0A590UJV4;A0A590UJ72;A0A590UJI8;Q13303-2;Q13303;Q13303-5 A0A590UJ15 KCNAB2 Voltage-gated potassium channel subunit beta-2 1 0 MYPESTTGS(1)PAR;MYPESTTGS(1)PAR;MYPESTTGS(1)PAR;MYPESTTGS(1)PAR;MYPEST(0.001)T(0.006)GS(0.993)PAR ;;;; 221.96 5.02E-23 2676410000 1539050 1644590 1271270 493917 1788210 1529200 1721150 1688080 1309870 1767510 TRUE FALSE FALSE 1431170.543 1514266.699 1763539.79 1149863.737 1563916.027 1340542.852 1290500.066 1303741.035 1423410.586 1324913.991 1.080198829 1.142916981 1.331059828 0.867878024 1.180390605 1.011796132 0.97402554 0.984019373 1.074341878 1 20.33746728 -5.261562645 24.99999999 1.017816099 1.180544382 0.407155939 0.094689241 11.55688908 2344098.335 0.02573671 0.041073129 5.48E-06 5.261562645 0.162728282 MYPPRS(ph)PK ddPTM_HeLa_A485_30min_R1 6 MYPPRSPK 8 1 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK ;;;;; 57.267 0.019371 10777930000 2453230 2422170 1811670 3536340 3141810 3009030 4297030 4306040 2047380 4708770 TRUE FALSE FALSE 2998942.55 2705421.711 2481882.123 3729521.3 2829000.365 3166578.158 3378934.437 3249976.938 2458270.386 3534960.297 0.848366685 0.765332984 0.70209618 1.055039091 0.800291977 0.895788889 0.955862061 0.919381454 0.695416689 1 21.75326258 -5.231176202 24.99906471 0.897361087 0.771272062 0.26365372 0.100137391 977.8011955 807717.1077 0.026371751 0.045669507 5.87E-06 5.231176202 -0.126089025 MYPPRS(ph)PK ddPTM_HeLa_A486_30min_R1 7 MYPPRSPK 8 1 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK;MYPPRS(1)PK;MY(0.002)PPRS(0.998)PK;MY(0.001)PPRS(0.999)PK ;;;;;; 82.008 0.0037068 14238600000 5678970 4953960 2849520 3009190 4819560 5497530 7464710 6738600 3856680 9267620 TRUE FALSE FALSE 5280903.529 4561390.168 3952930.457 7005546.396 4215045.844 4819300.643 5596960.604 5204367.883 4190980.128 6946947.63 0.760176096 0.656603506 0.569016879 1.008435182 0.606747894 0.693729232 0.805671916 0.749158934 0.60328368 1 22.72794779 -11.0648578 2.564549783 1.412119344 0.719053926 0.329060669 0.121206204 11053477.93 3363426.846 26721968.77 0.030463463 8.61E-12 11.0648578 -0.693065418 MYS(ph)FDDVLEEGK ddPTM_HeLa_A485_30min_R1 2 MYSFDDVLEEGK 12 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 MY(0.01)S(0.99)FDDVLEEGK;MYS(1)FDDVLEEGK ; 167.98 6.86E-10 25863000 62873 42518 33930 104814 56911 34382 64467 37232 42131 128368 TRUE FALSE FALSE 76858.88194 47490.11024 46482.11895 110539.7234 51244.74101 36182.18836 50693.0988 28100.79362 50586.30525 96368.22004 0.797554234 0.492798458 0.482338669 1.147055776 0.531759754 0.37545768 0.526035438 0.291598139 0.524927255 1 16.55626984 -5.973033625 24.98106934 0.49327224 0.713324589 0.104756561 0.247104199 415.285703 384709.8118 0.075073815 0.085123753 1.06E-06 5.973033625 0.220052349 MYS(ph)FDDVLEEGK ddPTM_HeLa_A486_30min_R1 1 MYSFDDVLEEGK 12 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 MYS(1)FDDVLEEGK 94.122 0.0017281 21252000 45686 49354 20695 18459 30381 60568 64255 56729 47479 83467 TRUE FALSE FALSE 42483.64732 45443.0093 28708.65823 42973.48487 26570.33169 53095.73597 48177.71938 43813.04509 51594.51795 62566.31992 0.679017839 0.72631744 0.458851636 0.686846932 0.424674677 0.848631277 0.770026421 0.700265656 0.824637249 1 15.93309863 -6.288060901 24.97584234 0.806310887 0.599952287 0.5021712 0.115154832 702.155261 658747.3473 0.039493504 0.034839459 5.15E-07 6.288060901 -0.206358601 MYS(ph)FDDVLEEGKRPPTMTVSEASYQSER ddPTM_HeLa_A485_30min_R1 2 MYSFDDVLEEGKRPPTMTVSEASYQSER 28 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 MYS(1)FDDVLEEGKRPPTMTVSEASYQSER;MYS(1)FDDVLEEGKRPPTMTVSEASYQSER ; 302.41 9.13E-93 662620000 298520 216797 178787 398000 330340 279540 387640 303810 224855 483300 TRUE FALSE FALSE 364924.7441 242149.5233 244927.7512 419741.7322 297450.1897 294176.2821 304817.5473 229300.1211 269981.336 362822.2045 1.005794959 0.667405468 0.675062739 1.156879946 0.819823556 0.810800107 0.840129252 0.63199032 0.7441147 1 18.46890322 -7.039101782 24.36342618 0.760043438 0.849058471 0.018348865 0.160978749 1326.714652 826639.6798 0.075843786 0.043800699 9.14E-08 7.039101782 0.089015033 MYS(ph)FDDVLEEGKRPPTMTVSEASYQSER ddPTM_HeLa_A486_30min_R1 2 MYSFDDVLEEGKRPPTMTVSEASYQSER 28 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 MYS(1)FDDVLEEGKRPPTMTVSEASYQSER;MYS(1)FDDVLEEGKRPPTMTVSEASYQSER ; 229.65 3.84E-39 670870000 207115 160359 91538 103035 152637 218740 281930 262700 166358 333530 TRUE FALSE FALSE 192597.308 147651.5688 126983.9651 239870.6871 133491.8442 191754.0828 211388.132 202888.9447 180778.0454 250011.9171 0.770352511 0.590578123 0.507911649 0.959437014 0.533941925 0.76697977 0.845512224 0.811517095 0.723077714 1 17.93163734 -11.05326109 0.121078153 1.462279042 0.534372658 0.332412297 0.12954793 68.4295841 1.161588531 10.39167479 1.514347885 8.85E-12 11.05326109 -0.927906384 MYS(ph)SPLCLTQDEFHPFIEALLPHVR ddPTM_HeLa_A486_30min_R1 1 MYSSPLCLTQDEFHPFIEALLPHVR 25 0 P08651-5;P08651-6;P08651 P08651-5 NFIC Nuclear factor 1 C-type 1 0 MY(0.294)S(0.353)S(0.353)PLCLTQDEFHPFIEALLPHVR 80.139 0.011009 37065000 7838.8 7070.8 7869 2738.9 11438 6408 9080.6 8607.8 6979.7 7449.9 TRUE FALSE FALSE 7289.3406 6510.484057 10916.08754 6376.297616 10003.33938 5617.446112 6808.537835 6647.991847 7584.706016 5584.396549 1.305304975 1.16583484 1.95474792 1.141806023 1.791301763 1.005918198 1.219207443 1.190458412 1.358196172 1 12.44718568 -6.28331847 24.99878069 1.170687918 1.463298683 0.27442404 0.256924222 1188.557193 1358026.302 0.087087296 0.076869336 5.21E-07 6.28331847 0.292610765 MYSS(ph)PLCLTQDEFHPFIEALLPHVR ddPTM_HeLa_A485_30min_R1 1 MYSSPLCLTQDEFHPFIEALLPHVR 25 0 P08651-5;P08651-6;P08651 P08651-5 NFIC Nuclear factor 1 C-type 1 0 MY(0.001)S(0.216)S(0.783)PLCLTQDEFHPFIEALLPHVR 140.04 1.12E-06 51594000 5348.6 7540.2 5528.4 6705.6 9007.4 6424.4 8355.1 10157 6566.4 6745.7 TRUE FALSE FALSE 6538.377618 8421.960799 7573.585216 7071.909949 8110.591629 6760.77165 6569.96463 7665.979824 7884.216249 5064.121135 1.291117934 1.663064641 1.495537925 1.396473299 1.601579309 1.335033557 1.297355346 1.51378287 1.556877499 1 12.3060962 -6.284752168 24.73670047 1.370017871 1.494355304 0.149680963 0.170249646 1601.405729 1699211.077 0.058117989 0.051285771 5.19E-07 6.284752168 0.124337433 MYSS(ph)PLCLTQDEFHPFIEALLPHVR ddPTM_HeLa_A486_30min_R1 1 MYSSPLCLTQDEFHPFIEALLPHVR 25 0 P08651-5;P08651-6;P08651 P08651-5 NFIC Nuclear factor 1 C-type 1 0 MYS(0.131)S(0.869)PLCLTQDEFHPFIEALLPHVR 155.45 2.51E-09 60647000 7032.8 8946.4 7803.1 3186.1 13685 7892.5 7433.6 9274.2 8798 8409.3 TRUE FALSE FALSE 6539.837037 8237.454682 10824.66929 7417.401817 11968.49969 6918.803595 5573.634655 7162.667114 9560.617724 6303.556545 1.037483679 1.306794763 1.717232045 1.176701084 1.898689987 1.097603162 0.884204753 1.136289817 1.516702144 1 12.62195033 NAASFPLRS(ph)PQPVCS(ph)PAGSEGTPK ddPTM_HeLa_A486_30min_R1 1 NAASFPLRSPQPVCSPAGSEGTPK 24 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 2 0 NAAS(0.142)FPLRS(0.858)PQPVCS(0.907)PAGS(0.071)EGT(0.022)PK 58.498 0.02795 201080000 99508 97442 46290 60751 69775 113520 144550 133190 72960 163500 TRUE FALSE FALSE 92533.00306 89720.34104 64214.72769 141431.3982 61023.16887 99515.05659 108382.0611 102865.5445 79284.23154 122558.5358 0.755010677 0.732061137 0.523951492 1.153990599 0.497910394 0.81197981 0.884328949 0.839317669 0.646909096 1 16.90311144 -14 0.209345016 2.094234089 0.731450395 0.13310459 0.178915957 302.2219623 3.011688111 139.4160013 0.371977721 1.00E-14 14 -1.362783694 NAASFPLRS(ph)PQPVCSPAGSEGTPK ddPTM_HeLa_A485_30min_R1 2 NAASFPLRSPQPVCSPAGSEGTPK 24 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 NAAS(0.061)FPLRS(0.939)PQPVCSPAGSEGTPK;NAASFPLRS(1)PQPVCSPAGSEGTPK ; 177.73 1.33E-15 423660000 212690 238474 147778 308860 265344 323180 517780 630720 228827 494870 TRUE FALSE FALSE 260002.1567 266361.4599 202447.2318 325732.2397 238925.4197 340101.2051 407152.0731 476034.9311 274750.48 371508.0164 0.699856114 0.716973654 0.544933683 0.876783879 0.643123187 0.915461282 1.095944247 1.281358437 0.739554647 1 18.50303382 -6.457355447 3.509931063 1.050527226 0.699695526 0.535307861 0.146576576 0.181025098 4.374475802 0.054387119 0.045550133 3.49E-07 6.457355447 -0.350831701 NAASFPLRS(ph)PQPVCSPAGSEGTPK ddPTM_HeLa_A486_30min_R1 2 NAASFPLRSPQPVCSPAGSEGTPK 24 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 NAASFPLRS(1)PQPVCSPAGSEGTPK;NAASFPLRS(1)PQPVCSPAGSEGTPK ; 194.26 1.78E-21 717000000 423220 316210 170486 195113 279933 372684 484390 474030 274294 588200 TRUE FALSE FALSE 393554.4635 291152.368 236502.745 454232.9245 244821.1929 326706.0373 363190.4986 366103.717 298070.0248 440910.8915 0.892594107 0.66034288 0.536395788 1.030214797 0.555262294 0.740979739 0.823727664 0.830334936 0.676032347 1 18.75012759 -14 0.300042099 3.098824187 0.734445164 0.207878461 0.144702248 422.2984027 3.915569471 557.2904222 0.141874463 1.00E-14 14 -2.364379023 NAAYYSPHGHILVLAGFGNLR ddPTM_HeLa_A485_30min_R1 1 NAAYYSPHGHILVLAGFGNLR 21 0 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2;H7C5R5 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 0 0 64.203 0.0063452 18998000 8186 7500.1 7514.2 12231 11445 8013.6 11002 11238 7153.4 15174 FALSE FALSE TRUE 10006.94746 8377.171453 10294.01527 12899.14856 10305.49561 8433.179705 8651.332822 8481.862879 8589.021765 11391.40106 0.878465029 0.735394304 0.903665425 1.13235839 0.904673232 0.740311017 0.759461701 0.744584695 0.753991693 1 13.47565758 -6.241101822 16.76725025 0.781193825 0.913062001 0.17993395 0.115374327 19.75323733 16283.82607 0.039994845 0.039788395 5.74E-07 6.241101822 0.131868175 NAAYYSPHGHILVLAGFGNLR ddPTM_HeLa_A486_30min_R1 1 NAAYYSPHGHILVLAGFGNLR 21 0 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2;H7C5R5 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 0 0 80.752 0.00076078 14555000 9259.9 10569 9706.7 10592 11757 12005 12473 10389 8099.5 11751 FALSE FALSE TRUE 8610.828828 9731.473948 13465.39419 24658.71129 10282.32743 10523.94516 9352.123474 8023.65149 8801.571181 8808.473114 0.977562027 1.104785565 1.528686529 2.79943084 1.167322338 1.194752487 1.061719024 0.910901513 0.999216444 1 13.10467624 -5.977289149 24.9995044 1.046358472 1.61447612 0.256376411 0.46064068 359.545307 395776.0833 0.154671012 0.175370195 1.05E-06 5.977289149 0.568117648 NADDDRIPR ddPTM_HeLa_A486_30min_R1 1 NADDDRIPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 66.595 0.023533 90778000 179520 190150 162630 44069 212760 114390 151600 154490 128530 147040 FALSE FALSE TRUE 166936.575 175081.8215 225604.6914 102594.8591 186073.6569 100277.7248 113668.0765 119315.9995 139671.0839 110220.2269 1.514572957 1.5884727 2.04685381 0.930816983 1.688198819 0.909794215 1.03128146 1.082523624 1.267200112 1 16.75002948 -5.673773692 1.230952283 1.083612528 1.673778152 0.420171151 0.278380638 0.440366436 1.395626893 0.106742931 0.169717933 2.12E-06 5.673773692 0.590165625 NADSELMPPPPERGDPPRLS(ph)PDPVAGSAVSQELR ddPTM_HeLa_A485_30min_R1 5 NADSELMPPPPERGDPPRLSPDPVAGSAVSQELR 34 2 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 NADS(0.003)ELMPPPPERGDPPRLS(0.981)PDPVAGS(0.013)AVS(0.003)QELR;NADSELMPPPPERGDPPRLS(0.994)PDPVAGS(0.004)AVS(0.002)QELR;NADSELMPPPPERGDPPRLS(0.981)PDPVAGS(0.008)AVS(0.011)QELR;NADSELMPPPPERGDPPRLS(1)PDPVAGSAVSQELR;NADSELMPPPPERGDPPRLS(0.974)PDPVAGS(0.02)AVS(0.006)QELR ;;;; 192.29 1.05E-21 5082600000 654356 1038856 895267 734264 1411345 979670 1491110 1626455 808464 1064170 TRUE FALSE FALSE 799915.2347 1160341.172 1226463.518 774374.9831 1270826.536 1030964.006 1172522.167 1227564.361 970715.3091 798892.0036 1.001280813 1.452438086 1.535205651 0.969311221 1.590736333 1.290492334 1.467685447 1.536583613 1.215077013 1 19.60764096 -8.007005547 23.55569719 0.999999981 1.362147848 0.223174051 0.205329051 177.9494297 598348.0546 0.18941427 0.048906554 9.84E-09 8.007005547 0.362147868 NADSELMPPPPERGDPPRLS(ph)PDPVAGSAVSQELR ddPTM_HeLa_A486_30min_R1 4 NADSELMPPPPERGDPPRLSPDPVAGSAVSQELR 34 2 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 NADSELMPPPPERGDPPRLS(1)PDPVAGSAVSQELR;NADSELMPPPPERGDPPRLS(0.907)PDPVAGS(0.052)AVS(0.042)QELR;NADSELMPPPPERGDPPRLS(1)PDPVAGSAVSQELR;NADSELMPPPPERGDPPRLS(0.993)PDPVAGS(0.007)AVSQELR ;;; 171.84 6.09E-15 4409420000 2449341 2072589 1747188 1056263 2819307 2299701 3117439 3073660 1776795 3025148 TRUE FALSE FALSE 2277654.844 1908349.499 2423745.985 2459033.645 2465683.227 2015987.272 2337422.789 2373854.716 1930809.021 2267631.25 1.004420293 0.841560769 1.068844851 1.084406313 1.087338705 0.889027822 1.030777287 1.046843359 0.851465167 1 21.11275463 -9.67655797 13.92190703 1.000002566 0.993025083 0 0.090134228 0 0 0.08796441 0.021334503 2.11E-10 9.67655797 -0.006977484 NAEAVLQS(ph)PGLSGK ddPTM_HeLa_A485_30min_R1 5 NAEAVLQSPGLSGK 14 0 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 1 0 NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK ;;;; 281.61 6.79E-68 7323110000 7598750 7054500 5378770 11280600 10982150 7580280 13684430 12461750 6415480 16443780 TRUE FALSE FALSE 9289065.722 7879462.409 7368600.852 11896830.61 9888728.585 7977171.739 10760639.74 9405486.273 7703007.99 12344648.27 0.752477148 0.638289746 0.596906505 0.963723741 0.801053895 0.646204863 0.871684596 0.761908 0.623995745 1 23.5573824 -11.42455367 2.343214494 3.543932746 0.742603063 0.32794331 0.111764103 13411113.63 2061601.808 179170038.7 0.030297289 3.76E-12 11.42455367 -2.801329683 NAEAVLQS(ph)PGLSGK ddPTM_HeLa_A486_30min_R1 6 NAEAVLQSPGLSGK 14 0 Q13045-3;Q13045;Q13045-2 Q13045-3 FLII Protein flightless-1 homolog 1 0 NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(1)PGLSGK;NAEAVLQS(0.993)PGLS(0.007)GK;NAEAVLQS(1)PGLSGK ;;;;; 310.57 1.20E-68 7130620000 10487740 8927530 4370050 4525060 8123760 10263090 13447230 12224330 7685510 14954200 TRUE FALSE FALSE 9752603.585 8220080.009 6062250.394 10534568.36 7104802.27 8996934.303 10082590.82 9441116.914 8351696.195 11209570.98 0.870024696 0.733309064 0.540810206 0.939783367 0.633815717 0.802611832 0.899462686 0.842237132 0.745050476 1 23.41822773 -6.520400651 22.64537456 0.857468827 0.74017797 0.199716805 0.119481636 52.17858023 476855.3428 0.043684351 0.034547823 3.02E-07 6.520400651 -0.117290857 NAEEES(ph)ES(ph)EAEEGD ddPTM_HeLa_A485_30min_R1 1 NAEEESESEAEEGD 14 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;H0Y503 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 2 0 NAEEES(1)ES(1)EAEEGD 273.94 1.01E-54 0 502480 577790 485430 666630 709500 492620 752720 850910 467610 821670 TRUE FALSE FALSE 614254.9425 645357.5144 665010.7574 703046.3089 638859.6888 518412.8215 591895.2228 642222.9883 561455.0378 616842.7907 0.995804688 1.04622689 1.078087914 1.139749576 1.035692884 0.840429408 0.959556036 1.041145326 0.910207668 1 19.23454332 -6.017127384 24.6495462 0.951713267 1.067460284 0.460771324 0.059516462 573.1865434 824923.5239 0.019958488 0.020425258 9.61E-07 6.017127384 0.115747018 NAEEES(ph)ES(ph)EAEEGD ddPTM_HeLa_A486_30min_R1 1 NAEEESESEAEEGD 14 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;H0Y503 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 2 0 NAEEES(1)ES(1)EAEEGD 120.92 7.18E-05 0 49853 53720 32863 23989 52217 55768 64449 66250 50121 68692 TRUE FALSE FALSE 46358.56214 49463.03156 45588.4337 55847.60434 45667.45696 48887.91117 48323.17853 51166.32123 54465.52864 51491.07609 0.900322263 0.96061367 0.885365721 1.084607442 0.886900419 0.949444348 0.938476765 0.993692987 1.05776637 1 15.6520348 -7.457062901 3.750610203 1.029021891 0.945780544 0.282893861 0.055234383 0.296622448 8.075503485 0.034692654 0.014186918 3.49E-08 7.457062901 -0.083241347 NAEEES(ph)ESEAEEGD ddPTM_HeLa_A485_30min_R1 2 NAEEESESEAEEGD 14 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;H0Y503 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 0 NAEEES(0.999)ES(0.001)EAEEGD;NAEEES(0.992)ES(0.008)EAEEGD ; 302.74 2.39E-58 1131590000 996480 1244790 1255170 1602280 1848660 1530700 1897840 2059670 1407620 2137300 TRUE FALSE FALSE 1218143.538 1390357.362 1719509.615 1689808.499 1664600.919 1610845.085 1492350.98 1554532.703 1690116.423 1604510.444 0.759199507 0.866530578 1.071672435 1.053161421 1.037450972 1.003948021 0.930097392 0.96885172 1.053353332 1 20.61370175 -4.567453406 4.099788647 1.012015209 0.777409773 0.802388228 0.041545245 0.089367427 3.139663872 0.012070689 0.039388261 2.71E-05 4.567453406 -0.234605436 NAEEES(ph)ESEAEEGD ddPTM_HeLa_A486_30min_R1 2 NAEEESESEAEEGD 14 0 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;H0Y503 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 0 NAEEES(0.947)ES(0.053)EAEEGD;NAEEES(0.996)ES(0.004)EAEEGD ; 248.76 8.31E-36 1267490000 1480350 1496120 1024960 612220 1673160 1687580 1803160 1997890 1570280 2361500 TRUE FALSE FALSE 1376585.11 1377562.002 1421851.961 1425279.1 1463296.671 1479383.538 1351990.296 1543014.061 1706393.135 1770165.029 0.777659194 0.778211059 0.803231302 0.805167358 0.826644209 0.835731987 0.763765114 0.871678084 0.96397404 1 20.75545244 -7.674143045 2.386732173 0.99636126 0.800722826 0.916822013 0.021998963 0.078274896 0.824096957 0.020750358 0.006185305 2.12E-08 7.674143045 -0.195638434 NAGAVIGK ddPTM_HeLa_A485_30min_R1 1 NAGAVIGK 8 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 112.17 0.010595 19596000 17204 15512 17703 29637 30635 17094 24669 21683 19607 44933 FALSE FALSE TRUE 21030.97045 17325.99346 24252.07638 31255.99427 27584.87183 17989.01541 19398.26662 16365.21025 23541.94505 33732.03003 0.623471829 0.513636252 0.718962848 0.926596894 0.817764949 0.533291812 0.575069648 0.485153435 0.697910711 1 15.04183152 -8.035280373 23.07684272 1.000000005 0.651569679 0.384464286 0.132345786 2477.282776 1620385.89 0.143846927 0.037141117 9.22E-09 8.035280373 -0.348430326 NAGVEGSLIVEK ddPTM_HeLa_A485_30min_R1 2 NAGVEGSLIVEK 12 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 270.67 4.46E-50 128653000 123773 116171 72640 164986 144766 116195 189010 184953 94601 286200 FALSE FALSE TRUE 151305.8768 129756.1879 99512.5588 173998.7674 130352.5887 122278.7905 148626.4694 139592.9868 113586.553 214855.6071 0.704221216 0.603922744 0.463160167 0.809840477 0.606698566 0.569120779 0.69175048 0.649706045 0.528664597 1 17.7130079 -10.75298362 2.868614358 1.07320186 0.625748661 0.598253314 0.092132656 49391803.99 41137803.59 25594037.64 0.023918164 1.77E-11 10.75298362 -0.447453199 NAGVEGSLIVEK ddPTM_HeLa_A486_30min_R1 1 NAGVEGSLIVEK 12 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 153.38 0.00013667 31679000 18651 22736 19840 10502 26913 27760 31422 29401 18170 29023 FALSE FALSE TRUE 17343.66121 20934.31656 27522.57933 24449.18674 23537.32059 24335.25344 23559.88325 22707.03412 19744.99023 21755.45189 0.797209881 0.962256112 1.265088837 1.123818842 1.081904467 1.118581842 1.082941571 1.043739943 0.907588145 1 14.40908936 -9.999891647 13.37561398 1.000013696 1.053756486 0.003329936 0.122910738 0 0 0.124703204 0.03024497 1.00E-10 9.999891647 0.05374279 NAIS(ph)LPQLNQAAYDSLVVGK ddPTM_HeLa_A485_30min_R1 2 NAISLPQLNQAAYDSLVVGK 20 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 NAIS(0.999)LPQLNQAAY(0.001)DSLVVGK;NAIS(1)LPQLNQAAYDSLVVGK ; 195.01 6.01E-20 291910000 143601 108658 88902 184826 173788 130458 230582 223035 83629 227866 TRUE FALSE FALSE 175544.547 121364.6079 121790.5493 194922.5764 156485.0565 137288.5792 181316.272 168335.3165 100412.5732 171063.1998 1.026197027 0.709472336 0.711962301 1.139476969 0.914779197 0.80256057 1.059937335 0.98405336 0.586991085 1 17.38416991 -5.175933761 24.99999536 0.926072989 0.805237265 0.086507932 0.164116578 200.7286448 58684.81442 0.044046309 0.076290441 6.67E-06 5.175933761 -0.120835724 NAIS(ph)LPQLNQAAYDSLVVGK ddPTM_HeLa_A486_30min_R1 2 NAISLPQLNQAAYDSLVVGK 20 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 NAIS(1)LPQLNQAAYDSLVVGK;NAIS(0.985)LPQLNQAAY(0.006)DS(0.009)LVVGK ; 155.56 4.61E-10 390290000 152025 181804 110124 114818 207574 204948 281902 275714 182288 263540 TRUE FALSE FALSE 141368.8326 167397.1889 152766.962 267302.1066 181538.1334 179663.5995 211367.1379 212939.941 198088.8706 197547.8686 0.715618111 0.847375323 0.773316174 1.353100433 0.918957692 0.909468681 1.069954029 1.077915659 1.002738587 1 17.59184276 NALFPEVFS(ph)PTPDENSDQNSR ddPTM_HeLa_A485_30min_R1 3 NALFPEVFSPTPDENSDQNSR 21 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 NALFPEVFS(0.951)PT(0.048)PDENS(0.001)DQNS(0.001)R;NALFPEVFS(0.998)PT(0.002)PDENSDQNSR;NALFPEVFS(0.999)PT(0.001)PDENSDQNSR ;; 178.15 2.32E-15 107115900 79004 91223 72996 105920 135053 78911 145057 133825 75749.4 154812 TRUE FALSE FALSE 96578.16724 101890.7363 100000.258 111706.1414 121606.6491 83042.65794 114064.3869 101004.2089 90951.60977 116220.2175 0.830992828 0.876704058 0.860437712 0.961159287 1.046346769 0.714528502 0.981450469 0.869076062 0.782579931 1 16.82650153 -7.053706083 0.007390926 1.793880292 4.00E-06 0.044181018 0.096395811 12004.23241 71.90435281 8666.911951 8777.930135 8.84E-08 7.053706083 -1.793876294 NALFPEVFS(ph)PTPDENSDQNSR ddPTM_HeLa_A486_30min_R1 4 NALFPEVFSPTPDENSDQNSR 21 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 NALFPEVFS(0.998)PT(0.002)PDENSDQNSR;NALFPEVFS(0.998)PT(0.002)PDENSDQNSR;NALFPEVFS(0.998)PT(0.002)PDENSDQNSR;NALFPEVFS(0.998)PT(0.002)PDENSDQNSR ;;; 210.56 4.60E-27 165205000 194190 221717 162776 106750 254156 228772 303432 274431 206578 286573 TRUE FALSE FALSE 180578.2838 204147.3374 225807.2265 248519.3948 222277.3846 200548.4366 227510.1042 211949.0521 224484.3474 214813.2555 0.840629147 0.950347952 1.051179202 1.156909029 1.03474706 0.933594327 1.059106449 0.986666542 1.045020927 1 17.7127235 -4.451229431 2.823431128 1.03429759 0.838004924 0.545812758 0.054784142 0.24918754 3.384282319 0.015315003 0.090259835 3.54E-05 4.451229431 -0.196292667 NALPPVLTTVNGQS(ph)PPEHSAPAK ddPTM_HeLa_A485_30min_R1 6 NALPPVLTTVNGQSPPEHSAPAK 23 0 Q6PKG0;A0A0B4J210;H0YBM7 Q6PKG0 LARP1 La-related protein 1 1 0 NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK ;;;;; 211.19 2.06E-29 21339840000 2643560 2644510 1832920 3904240 4027100 2330960 4532960 4394740 2269270 5074920 TRUE FALSE FALSE 3231610.802 2953762.44 2510993.382 4117518.745 3626147.784 2453005.461 3564456.065 3316923.124 2724691.674 3809835.841 0.848228359 0.775299137 0.659081779 1.080760147 0.951785834 0.643861196 0.935593084 0.870621009 0.715172986 1 21.86129741 -11.60171773 2.177259254 4.389365653 0.834065086 0.130166025 0.130746684 11235500.55 409838.4743 191791945 0.033002157 2.50E-12 11.60171773 -3.555300567 NALPPVLTTVNGQS(ph)PPEHSAPAK ddPTM_HeLa_A486_30min_R1 6 NALPPVLTTVNGQSPPEHSAPAK 23 0 Q6PKG0;A0A0B4J210;H0YBM7 Q6PKG0 LARP1 La-related protein 1 1 0 NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLT(0.001)T(0.004)VNGQS(0.994)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK ;;;;; 188.47 3.93E-21 22550670000 4712410 3599510 1919110 1915400 3391020 3917160 5376500 4831910 3118220 5389380 TRUE FALSE FALSE 4382094.394 3314271.718 2662240.788 4459147.999 2965686.652 3433900.626 4031242.833 3731789.573 3388509.82 4039844.169 1.08471867 0.820395931 0.658995911 1.10379208 0.73410917 0.850008189 0.997870874 0.923745921 0.838772408 1 21.94586821 -6.73083191 24.96765733 0.933742893 0.866970573 0.048894828 0.135824498 683.1610938 557279.1893 0.051182448 0.039641266 1.86E-07 6.73083191 -0.06677232 NAMS(ph)LPQLNEK ddPTM_HeLa_A485_30min_R1 4 NAMSLPQLNEK 11 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK ;;; 207.64 6.20E-15 1191909000 1339274 1319686 998820 1774758 1715363 1350943 2138077 1971585 1076146 2267818 TRUE FALSE FALSE 1637190.881 1474011.798 1368325.082 1871708.536 1544575.437 1421676.287 1681259.382 1488050.687 1292118.631 1702492.709 0.961643402 0.865796247 0.803718615 1.099392982 0.907243496 0.835055727 0.987528096 0.874042326 0.758956925 1 20.69921719 -7.503811205 24.55953469 0.858485532 0.919782617 0.035228355 0.096049572 1658.979926 2136830.479 0.052848082 0.024701333 3.13E-08 7.503811205 0.061297085 NAMS(ph)LPQLNEK ddPTM_HeLa_A486_30min_R1 6 NAMSLPQLNEK 11 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK ;;;;; 233.19 4.20E-19 1435505000 3059274 2944409 1633010 1481213 2831425 3485785 4194440 3879832 2398022 4429420 TRUE FALSE FALSE 2844834.691 2711083.307 2265355.206 3448338.72 2476281.275 3055744.288 3144946.748 2996478.95 2605884.478 3320264.401 0.856809683 0.81652633 0.682281569 1.03857353 0.745808458 0.920331612 0.947197683 0.902482028 0.784842459 1 21.6628667 -5.249759763 24.99992345 0.8972303 0.788337924 0.258365901 0.092675805 1129.875318 2418465.24 0.024335198 0.041712562 5.63E-06 5.249759763 -0.108892376 NAPAAVDEGSIS(ph)PR ddPTM_HeLa_A485_30min_R1 4 NAPAAVDEGSISPR 14 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGS(0.002)IS(0.998)PR;NAPAAVDEGS(0.036)IS(0.964)PR ;;; 224.64 7.33E-28 7781810000 1878940 2245770 2022580 2452000 3295570 2128950 3380600 3027470 2068820 3509220 TRUE FALSE FALSE 2296903.721 2508393.266 2770816.509 2585946.551 2967451.479 2240418.53 2658307.193 2284978.236 2484013.198 2634436.036 0.871876823 0.952155691 1.051768375 0.981593979 1.126408627 0.850435729 1.009061202 0.867350053 0.942901313 1 21.32906272 -6.295711581 24.99868719 0.930353537 0.996496159 0.141984594 0.076947832 1250.028618 911786.9983 0.026875743 0.023703256 5.06E-07 6.295711581 0.066142623 NAPAAVDEGSIS(ph)PR ddPTM_HeLa_A486_30min_R1 4 NAPAAVDEGSISPR 14 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR;NAPAAVDEGS(0.003)IS(0.997)PR ;;; 239.38 2.94E-35 7654410000 3426530 3143570 2259540 1283390 3325270 3067640 3768140 3728160 2882770 3870990 TRUE FALSE FALSE 3186347.942 2894462.065 3134494.401 2987796.779 2908183.63 2689185.766 2825311.517 2879339.353 3132650.825 2901668.908 1.098108724 0.997516311 1.080238477 1.029682184 1.002245164 0.926772093 0.973685009 0.992304582 1.079603126 1 21.46845148 -5.672650895 3.261803385 0.990382195 1.052686319 0.297040589 0.042883583 0.319018229 6.751043337 0.013626195 0.017819609 2.12E-06 5.672650895 0.062304124 NAPAIIFIDELDAIAPK ddPTM_HeLa_A485_30min_R1 1 NAPAIIFIDELDAIAPK 17 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 183.58 2.40E-13 1189500 1604.5 1494.9 1255.3 2372.9 1911.2 1470.2 2747.9 2033.4 1412.8 3742.7 FALSE FALSE TRUE 1961.41549 1669.715551 1719.687707 2502.525518 1720.914217 1547.177399 2160.788717 1534.705462 1696.336001 2809.713769 0.698083738 0.594265355 0.612050852 0.890669201 0.612487377 0.550653029 0.769042292 0.546214165 0.60373979 1 11.45620745 -10.2337982 5.192509054 1.000036445 0.653147049 0.51252532 0.101517333 4.30E-05 6.34E-06 0.0986578 0.023925522 5.84E-11 10.2337982 -0.346889396 NAPLPSLQNGPNTPNKPSS(ph)PPPPQQFVVQHSLFGSPVAK ddPTM_HeLa_A485_30min_R1 1 NAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVAK 39 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 NAPLPSLQNGPNTPNKPS(0.045)S(0.955)PPPPQQFVVQHSLFGSPVAK 280.67 2.03E-79 591020000 115930 95495 68979 160890 152910 114930 230840 176730 96836 273840 TRUE FALSE FALSE 141718.2285 106662.3096 94497.20256 169679.0133 137685.7435 120947.5571 181519.1482 133386.6904 116270.097 205576.7277 0.689369026 0.518844282 0.459668775 0.825380456 0.669753552 0.588332923 0.882975181 0.648841393 0.565580055 1 17.64931743 -14 0.191020673 2.46243644 0.590527097 0.411372006 0.12410785 141.9329658 1.389880499 79.37936616 0.344742489 1.00E-14 14 -1.871909343 NAPLPSLQNGPNTPNKPSS(ph)PPPPQQFVVQHSLFGSPVAK ddPTM_HeLa_A486_30min_R1 1 NAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVAK 39 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 NAPLPSLQNGPNTPNKPS(0.062)S(0.938)PPPPQQFVVQHSLFGSPVAK 270.6 8.86E-67 840700000 433660 343730 150860 88113 304020 403700 588210 519350 289960 589100 TRUE FALSE FALSE 403262.6734 316491.583 209277.0322 205131.517 265886.9767 353895.5985 441033.6365 401105.3423 315093.9663 441585.5256 0.913215334 0.716716388 0.473921857 0.46453406 0.602118868 0.801420287 0.99875021 0.908329914 0.713551392 1 18.75233336 -6.413914091 3.862481836 0.898105973 0.621227384 0.453349167 0.140261313 0.238073702 6.296274701 0.056258421 0.048397069 3.86E-07 6.413914091 -0.276878589 NAPLRT(ph)SIR ddPTM_HeLa_A486_30min_R1 2 NAPLRTSIR 9 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 NAPLRT(0.679)S(0.321)IR;NAPLRT(0.878)S(0.122)IR ; 86.344 0.0049338 261490000 152950 130569 91110 56605 131119 130449 179699 202116 116591 156210 TRUE FALSE FALSE 142228.9948 120222.2369 126390.232 131779.3007 114672.8324 114355.5287 134736.4095 156098.599 126697.2018 117093.9992 1.214656564 1.02671561 1.079391197 1.125414637 0.979322878 0.976613058 1.150668782 1.333105026 1.082012764 1 16.83730762 -6.974340273 22.9464143 1.172912707 1.064352719 0.084003342 0.103302476 142.1285965 127098.5291 0.042264589 0.028492738 1.06E-07 6.974340273 -0.108559988 NARYAEAVQLLGGELQRSPR ddPTM_HeLa_A485_30min_R1 1 NARYAEAVQLLGGELQRSPR 20 2 Q8N4P2 Q8N4P2 TTC30B Tetratricopeptide repeat protein 30B 0 0 60.034 0.015767 698610000 97225 93638 75855 75437 118430 110030 155390 155320 69904 92690 FALSE FALSE TRUE 118852.3658 104588.1496 103916.9211 79557.93229 106638.6934 115791.0007 122189.6571 117227.5265 83933.0916 69584.08883 1.708039407 1.503046908 1.493400615 1.143335116 1.532515481 1.664044218 1.755999958 1.684688676 1.206210975 1 16.08646984 -7.943201015 4.554930478 1.003082815 1.550169198 0.565505569 0.164782304 0.144070078 5.881592188 0.176082414 0.046089348 1.14E-08 7.943201015 0.547086383 NAS(ph)AS(ph)FQELEDKK ddPTM_HeLa_A485_30min_R1 2 NASASFQELEDKK 13 1 F2Z3H0;F2Z3N9;H7C3L7;Q99543-2;Q99543 F2Z3H0 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 2 0 NAS(1)AS(1)FQELEDKK;NAS(1)AS(1)FQELEDKK ; 69.256 0.0025483 156320000 1276170 852420 391630 1685150 731000 783040 1332410 1038780 506820 1906610 TRUE FALSE FALSE 1560049.614 952103.1039 536510.2341 1777205.477 658219.0733 824038.7636 1047729.719 784017.5763 608534.1252 1431327.216 1.089932195 0.665188989 0.37483409 1.241648631 0.459866246 0.575716548 0.73199874 0.547755655 0.425153744 1 20.44892209 -4.262741302 7.526449082 0.655888979 1.094478274 0.193932129 0.256147719 0.152865986 86.8532228 0.061223752 0.347555927 5.46E-05 4.262741302 0.438589295 NAS(ph)AS(ph)FQELEDKK ddPTM_HeLa_A486_30min_R1 1 NASASFQELEDKK 13 1 F2Z3H0;F2Z3N9;H7C3L7;Q99543-2;Q99543 F2Z3H0 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 2 0 NAS(1)AS(1)FQELEDKK 84.375 0.0004657 0 582270 491010 150820 249040 259390 523150 643640 537920 330230 988420 TRUE FALSE FALSE 541455.8798 452100.5794 209221.5431 579777.7058 226854.8875 458609.072 482594.4643 415447.3587 358854.6023 740913.1985 0.730795296 0.610193718 0.282383339 0.782517719 0.306182813 0.618978138 0.651350881 0.560723388 0.48434095 1 19.49894501 -10.20028114 4.447841267 1.000115651 0.555727315 0.421753926 0.155017473 201256207.8 57.85752162 253941.8091 0.035653552 6.31E-11 10.20028114 -0.444388336 NAS(ph)ASFQELEDK ddPTM_HeLa_A485_30min_R1 2 NASASFQELEDK 12 0 F2Z3H0;F2Z3N9;H7C3L7;Q99543-2;Q99543 F2Z3H0 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(0.917)AS(0.083)FQELEDK;NAS(0.995)AS(0.005)FQELEDK ; 226.39 3.16E-23 342000000 336530 302650 156010 493950 262110 277490 413030 335570 196486 612690 TRUE FALSE FALSE 411389.9375 338042.2848 213724.5911 520933.2378 236013.4081 292018.9473 324782.7664 253270.9313 235918.9379 459957.6587 0.894408278 0.734942181 0.464661447 1.132567809 0.513119857 0.634882237 0.706114487 0.550639666 0.512914468 1 18.81114153 -4.327142074 4.19192721 0.677366862 0.900164524 0.076692854 0.207415185 0.491178225 15.58589743 0.049994889 0.270772076 4.71E-05 4.327142074 0.222797662 NAS(ph)ASFQELEDKK ddPTM_HeLa_A485_30min_R1 4 NASASFQELEDKK 13 1 F2Z3H0;F2Z3N9;H7C3L7;Q99543-2;Q99543 F2Z3H0 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(0.99)AS(0.01)FQELEDKK;NAS(0.685)AS(0.315)FQELEDKK;NAS(0.999)AS(0.001)FQELEDKK;NAS(0.995)AS(0.005)FQELEDKK ;;; 194.19 4.51E-18 1653650000 1099850 796940 336368 1796100 655510 868770 1513910 1142010 520690 2502520 TRUE FALSE FALSE 1344507.838 890135.2005 460804.5206 1894216.395 590245.1228 914257.4538 1190450.761 861930.2569 625187.7069 1878687.819 0.715663254 0.473806873 0.245279985 1.00826565 0.314179459 0.48664682 0.633660765 0.458793764 0.332778922 1 20.84129392 -10.36329667 3.29773808 1.003824573 0.518466464 0.316788821 0.212007368 125410055.1 170634967 4602347.949 0.052600283 4.33E-11 10.36329667 -0.485358108 NAS(ph)ASFQELEDKK ddPTM_HeLa_A486_30min_R1 3 NASASFQELEDKK 13 1 F2Z3H0;F2Z3N9;H7C3L7;Q99543-2;Q99543 F2Z3H0 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(0.997)AS(0.003)FQELEDKK;NAS(0.969)AS(0.031)FQELEDKK;NAS(0.996)AS(0.004)FQELEDKK ;; 197.38 1.35E-21 1123470000 631110 485490 97115 264974 238063 554540 695510 562210 377373 1282700 TRUE FALSE FALSE 586872.4481 447018.0043 134720.5288 616872.863 208202.9187 486126.4929 521486.0416 434207.056 410083.9955 961503.571 0.610369494 0.464915594 0.140114434 0.641571058 0.216538893 0.505589899 0.542365164 0.451591725 0.426502831 1 19.87493269 -14 0.38830157 9.356658674 0.427989218 0.551093564 0.150250538 481.7283471 3.519826898 3398.700428 0.095887523 1.00E-14 14 -8.928669456 NAS(ph)ILLEELDLEK ddPTM_HeLa_A485_30min_R1 2 NASILLEELDLEK 13 0 H0YM23;O75179-7;O75179-2;O75179;O75179-6;H0YLQ3 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 NAS(1)ILLEELDLEK;NAS(1)ILLEELDLEK ; 76.262 0.0074543 17954400 53438 37872 35394 65840 66409 36762 50113 42718 30685 78515 TRUE FALSE FALSE 65325.09874 42300.80096 48487.71347 69436.67248 59797.08678 38686.80148 39405.94816 32241.34352 36843.19804 58942.65546 1.108282249 0.717660252 0.822625195 1.178037738 1.014495976 0.65634643 0.668547215 0.546995097 0.625068514 1 15.84702444 -6.266813093 24.72526146 0.669150864 0.957868193 0.38811459 0.166369171 397.466493 1828796.988 0.05853566 0.053128686 5.41E-07 6.266813093 0.288717329 NAS(ph)ILLEELDLEK ddPTM_HeLa_A486_30min_R1 3 NASILLEELDLEK 13 0 H0YM23;O75179-7;O75179-2;O75179;O75179-6;H0YLQ3 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 NAS(1)ILLEELDLEK;NAS(1)ILLEELDLEK;NAS(1)ILLEELDLEK ;; 125.52 3.01E-05 36289500 73085 74245 43635 43471.2 69863 86674 104381 88021 52459.9 103737 TRUE FALSE FALSE 67962.11891 68361.5558 60531.64059 101203.1505 61100.13109 75981.04312 78263.76977 67980.53978 57007.16637 77760.57999 0.873991924 0.879128677 0.778436074 1.301471138 0.785746854 0.97711518 1.006471014 0.874228816 0.733111383 1 16.24675136 -9.620243581 11.097239 0.999995587 0.918579439 0.027211186 0.153281395 0 0 0.145298563 0.035240078 2.40E-10 9.620243581 -0.081416148 NAS(ph)NLER ddPTM_HeLa_A485_30min_R1 2 NASNLER 7 0 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 NAS(1)NLER;NAS(1)NLER ; 84.817 0.0086678 3294800000 1678650 1769740 1418250 1595050 2307290 1551420 2096500 2134940 1334790 2141630 TRUE FALSE FALSE 2052059.901 1976695.698 1942919.693 1682183.543 2077568.106 1632649.952 1648565.648 1611342.618 1602670.11 1607761.055 1.276346317 1.229471066 1.208462966 1.04628952 1.292211986 1.01548047 1.025379762 1.002227671 0.996833519 1 20.61662158 -5.963667543 0.537369684 0.974486475 1.275311678 0.658439847 0.069522872 0.655663139 0.398560565 0.056947768 0.095350497 1.09E-06 5.963667543 0.300825203 NAS(ph)NLER ddPTM_HeLa_A486_30min_R1 2 NASNLER 7 0 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 NAS(1)NLER;NAS(1)NLER ; 101.82 0.0041405 3815900000 4069000 4443000 3228700 2071900 4159900 4119300 5347700 5328700 2996000 4556000 TRUE FALSE FALSE 3783784.112 4090920.499 4478939.108 4823487.908 3638126.552 3611102.648 4009648.898 4115471.335 3255695.692 3415147.945 1.107941493 1.197875045 1.31149197 1.412380367 1.065291053 1.057378101 1.174077657 1.205063851 0.953310294 1 21.70351665 -5.797936241 24.99978124 1.090094022 1.257031205 0.433970816 0.100801867 185.548111 127096.5405 0.032727637 0.037110662 1.59E-06 5.797936241 0.166937183 NAS(ph)VPNLR ddPTM_HeLa_A485_30min_R1 4 NASVPNLR 8 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019;E9PNJ0;E9PPQ0;E9PRW1;E9PSD6;C9JF50;E9PLU1;E9PRK5;Q9H019-2 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 0 NAS(1)VPNLR;NAS(1)VPNLR;NAS(1)VPNLR;NAS(1)VPNLR ;;; 91.215 0.0037509 4889900000 2038830 2314600 2081120 2779840 3259150 2254250 3795710 3543520 2062750 3540820 TRUE FALSE FALSE 2492360.7 2585272.336 2851012.891 2931695.62 2934657.582 2372279.044 2984725.55 2674466.164 2476725.004 2658158.738 0.937626735 0.972580117 1.072551782 1.102904645 1.104018936 0.892451986 1.122854519 1.006134858 0.931744583 1 21.34199583 -9.461493203 12.9808433 1.000002704 1.020650039 0.000354905 0.077851742 0 0 0.076314142 0.018508898 3.46E-10 9.461493203 0.020647335 NAS(ph)VPNLR ddPTM_HeLa_A486_30min_R1 4 NASVPNLR 8 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019;E9PNJ0;E9PPQ0;E9PRW1;E9PSD6;C9JF50;E9PLU1;E9PRK5;Q9H019-2 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 0 NAS(1)VPNLR;NAS(1)VPNLR;NAS(1)VPNLR;NAS(1)VPNLR ;;; 149.94 0.00024101 5208120000 2122730 2448210 1648840 1085950 2473850 2331610 3228430 3034520 2171090 3014200 TRUE FALSE FALSE 1973937.589 2254204.923 2287315.005 2528146.481 2163556.665 2043959.664 2420642.667 2343626.039 2359281.829 2259424.701 0.873646105 0.997689776 1.012343985 1.118933718 0.957569714 0.904637213 1.071353547 1.037266716 1.04419582 1 21.10752405 -4.250401789 2.948068737 1.018530731 0.847097945 0.375556765 0.055633166 0.473479926 5.846000299 0.015061354 0.194917729 5.62E-05 4.250401789 -0.171432785 NASAS(ph)FQELEDK ddPTM_HeLa_A486_30min_R1 2 NASASFQELEDK 12 0 F2Z3H0;F2Z3N9;H7C3L7;Q99543-2;Q99543 F2Z3H0 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(0.301)AS(0.699)FQELEDK;NAS(0.256)AS(0.744)FQELEDK ; 232.26 7.08E-24 357480000 435020 352660 128715 155884 190137 365720 437020 366060 287880 657710 TRUE FALSE FALSE 404527.3444 324713.9372 178556.8951 362905.8299 166288.2445 320601.1848 327672.9737 282716.129 312833.6702 493015.135 0.820517091 0.65862874 0.362173253 0.736094704 0.337288316 0.650286699 0.664630658 0.573443103 0.634531575 1 18.91127241 -9.191967404 0.844589602 1.012146317 0.590848507 0.40857155 0.142971972 9.910479312 5.952796288 0.553159517 0.046178482 6.43E-10 9.191967404 -0.42129781 NASLSQS(ph)PR ddPTM_HeLa_A485_30min_R1 1 NASLSQSPR 9 0 C9J1X0;A4D1P6-3;A4D1P6-2;A4D1P6 C9J1X0 WDR91 WD repeat-containing protein 91 1 0 NASLSQS(1)PR 139.29 0.00019125 0 367890 453760 381870 481240 584700 359930 581290 481150 312350 572990 TRUE FALSE FALSE 449725.8613 506823.2848 523139.6039 507528.9226 526485.215 378775.3782 457092.6428 363147.2081 375035.78 430154.1381 1.045499326 1.17823645 1.216167782 1.179876881 1.223945485 0.880557327 1.062625237 0.844225769 0.871863704 1 18.71449419 -6.261681146 24.9999118 0.930291689 1.172525498 0.713002371 0.075124616 12.09797191 1250926.864 0.02584684 0.024222687 5.47E-07 6.261681146 0.242233808 NASLSQS(ph)PR ddPTM_HeLa_A486_30min_R1 2 NASLSQSPR 9 0 C9J1X0;A4D1P6-3;A4D1P6-2;A4D1P6 C9J1X0 WDR91 WD repeat-containing protein 91 1 0 NASLSQS(1)PR;NASLSQS(1)PR ; 152.32 8.76E-06 934090000 1243070 1151160 824210 437120 1104140 1006720 1271920 1114160 889190 1332830 TRUE FALSE FALSE 1155937.212 1059937.889 1143366.185 1017637.451 965648.4655 882521.122 953672.163 860490.0899 966265.7051 999080.6927 1.157000852 1.060913194 1.144418257 1.018573833 0.96653701 0.883333177 0.954549687 0.861281873 0.967154818 1 19.93024168 -5.586779019 2.084944436 0.926476667 1.116125153 0.759452971 0.045657349 0.138908378 1.224020427 0.01385864 0.020394959 2.59E-06 5.586779019 0.189648486 NASTVVVSDKYNLKPIPLK(ac)R ddPTM_HeLa_A486_30min_R1 1 NASTVVVSDKYNLKPIPLKR 20 3 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 1 NASTVVVSDKYNLKPIPLK(1)R 93.804 0.00050677 7556100 11766 13219 10757 8963.8 17520 15157 17705 21442 14702 21297 FALSE TRUE FALSE 10941.26416 12171.4783 14922.39848 20868.17941 15322.47823 13287.08345 13275.02174 16560.12468 15976.3812 15964.09258 0.68536712 0.762428446 0.934747679 1.307194837 0.959808906 0.832310598 0.831555046 1.037335795 1.000769766 1 13.96254293 -4.752149189 3.746757506 0.990920454 0.708808247 0.426328335 0.12480313 0.220684113 6.619979273 0.036071386 0.097979221 1.77E-05 4.752149189 -0.282112207 NAT(ph)SPQVQRPSFMDYFDKQDFK ddPTM_HeLa_A485_30min_R1 1 NATSPQVQRPSFMDYFDKQDFK 22 2 A0A087WZ06;Q13188;Q13188-2 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 0 NAT(0.809)S(0.19)PQVQRPS(0.001)FMDYFDKQDFK 126.42 2.41E-06 333930000 147570 103210 62782 197610 184460 137130 241520 225370 101110 270210 TRUE FALSE FALSE 180396.4374 115279.5117 86007.67438 208404.9339 166094.5147 144309.9148 189917.279 170097.6541 121401.8496 202851.6198 0.889302425 0.568294755 0.423993037 1.027376237 0.818798069 0.711406273 0.936237429 0.838532393 0.598476116 1 17.6300653 -5.262618565 24.99988035 0.8373939 0.621306549 0.280250268 0.160987725 141.8324691 3007005.051 0.044521914 0.070441069 5.46E-06 5.262618565 -0.21608735 NAT(ph)SPQVQRPSFMDYFDKQDFK ddPTM_HeLa_A486_30min_R1 2 NATSPQVQRPSFMDYFDKQDFK 22 2 A0A087WZ06;Q13188;Q13188-2 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 0 NAT(0.812)S(0.188)PQVQRPSFMDYFDKQDFK;NAT(0.876)S(0.124)PQVQRPSFMDYFDKQDFK ; 139.4 3.27E-07 455690000 586490 438790 194804 314630 378990 585420 780080 658250 351470 895480 TRUE FALSE FALSE 545380.0796 404018.6824 270237.3258 732474.5405 331453.5403 513196.8325 584895.7332 508380.8445 381935.7026 671245.9794 0.812489157 0.601893635 0.402590606 1.09121628 0.493788492 0.764543622 0.871358267 0.757368923 0.568995144 1 19.35648202 -14 0.27220193 2.991964729 0.688409755 0.167008759 0.190796707 391.3027888 3.796463524 439.4919813 0.227761549 1.00E-14 14 -2.303554974 NATDLQNSS(ph)MSEEELTK ddPTM_HeLa_A485_30min_R1 4 NATDLQNSSMSEEELTK 17 0 Q5QNY5;H0YJ60;P40855-5;P40855 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 0 NATDLQNS(0.019)S(0.979)MS(0.001)EEELTK;NATDLQNSS(0.988)MS(0.012)EEELTK;NATDLQNS(0.001)S(0.994)MS(0.004)EEELTK;NATDLQNS(0.065)S(0.892)MS(0.042)EEELTK ;;; 442.05 1.85E-193 1919440000 2114990 1716190 1376060 3077270 2916810 2139240 4002120 3938250 1784360 4126250 TRUE FALSE FALSE 2585462.229 1916883.492 1885121.857 3245373.468 2626402.155 2251247.299 3147034.368 2972388.013 2142464.685 3097651.813 0.834652306 0.618818256 0.6085648 1.04768827 0.847868745 0.726759311 1.015941932 0.959561691 0.691641545 1 21.56274356 -5.246916762 24.85051525 0.892438178 0.680492428 0.371196754 0.125669676 806.9269277 1380778.33 0.033925054 0.058412119 5.66E-06 5.246916762 -0.21194575 NATDLQNSS(ph)MSEEELTK ddPTM_HeLa_A486_30min_R1 5 NATDLQNSSMSEEELTK 17 0 Q5QNY5;H0YJ60;P40855-5;P40855 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 0 NATDLQNS(0.019)S(0.975)MS(0.006)EEELTK;NATDLQNS(0.005)S(0.993)MS(0.002)EEELTK;NATDLQNS(0.025)S(0.972)MS(0.003)EEELTK;NATDLQNSS(0.999)MS(0.001)EEELTK;NATDLQNS(0.005)S(0.989)MS(0.005)EEELTK ;;;; 465.3 1.61E-216 2135280000 2677600 2672370 1396713 1506621 2798900 3495750 4560170 4258370 2414600 4964310 TRUE FALSE FALSE 2489914.067 2460601.669 1937557.679 3507489.828 2447835.863 3064479.907 3419167.233 3288832.111 2623899.472 3721214.464 0.669113294 0.661236188 0.520678853 0.942565891 0.65780564 0.823516069 0.918831007 0.883806118 0.705119121 1 21.82734211 -5.598272921 0.830905566 0.866564021 0.61760763 0.386295297 0.116440733 0.756590561 1.084583816 0.057619175 0.11971611 2.52E-06 5.598272921 -0.248956391 NATS(ph)PQVQRPSFMDYFDKQDFK ddPTM_HeLa_A485_30min_R1 1 NATSPQVQRPSFMDYFDKQDFK 22 2 A0A087WZ06;Q13188;Q13188-2 A0A087WZ06 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 0 NAT(0.104)S(0.896)PQVQRPSFMDYFDKQDFK 114.21 4.36E-05 254110000 253540 171790 97368 342810 293090 233280 426470 421830 168300 458530 TRUE FALSE FALSE 309939.0983 191879.3461 133388.475 361536.8423 263908.9305 245494.1801 335351.2006 318375.5311 202076.2663 344226.9096 0.900391834 0.55742111 0.387501591 1.050286402 0.766671411 0.713175447 0.974215528 0.924900181 0.58704378 1 18.39300036 -5.264712348 24.99410586 0.851160028 0.609336478 0.28383231 0.177465372 370.4802518 2829188.539 0.04922147 0.0765697 5.44E-06 5.264712348 -0.24182355 NATTGRIVSPGFPGNYSNNLTCHWLLEAPEGQRLHLHFEK ddPTM_HeLa_A485_30min_R1 2 NATTGRIVSPGFPGNYSNNLTCHWLLEAPEGQRLHLHFEK 40 2 H0YGK0;H0YFX0;H0YF95;A0A0A0MSU7;C9JFF1;Q53EL9-4;Q53EL9-2;Q53EL9-3;Q53EL9 H0YGK0 SEZ6 Seizure protein 6 homolog 0 0 ; ; 22.801 0.036175 29868200000 1515270 704300 361930 11597600 1336680 798970 3158000 1839740 291240 12806200 FALSE FALSE TRUE 1852336.584 786661.7584 495822.9682 12231147.52 1203595.446 840802.8338 2483267.502 1388540.88 349689.1966 9613850.021 0.192673755 0.081825882 0.05157382 1.272242389 0.125193907 0.087457453 0.258301044 0.144431302 0.036373482 1 23.19668287 -10.80973052 2.644586546 1.232912232 0.25797779 0.293820659 0.348617201 76877733.67 54435635.18 114595988 0.09364423 1.55E-11 10.80973052 -0.974934442 NATTGRIVSPGFPGNYSNNLTCHWLLEAPEGQRLHLHFEK ddPTM_HeLa_A486_30min_R1 1 NATTGRIVSPGFPGNYSNNLTCHWLLEAPEGQRLHLHFEK 40 2 H0YGK0;H0YFX0;H0YF95;A0A0A0MSU7;C9JFF1;Q53EL9-4;Q53EL9-2;Q53EL9-3;Q53EL9 H0YGK0 SEZ6 Seizure protein 6 homolog 0 0 22.539 0.036257 729570000 109710 248860 15496 802080 64270 302270 535530 435150 73518 1690100 FALSE FALSE TRUE 102019.8955 229139.4273 21496.4662 1867282.775 56208.65731 264979.0007 401534.7297 336075.8443 79890.59943 1266887.959 0.080527954 0.180867949 0.01696793 1.473913112 0.044367505 0.209157407 0.316945731 0.26527669 0.063060509 1 20.27285751 -10.49974778 3.641233456 1.010441037 0.307669138 0.212600303 0.406577511 1148412773 1391243672 117237213.5 0.10186353 3.16E-11 10.49974778 -0.7027719 NAYAVLYDIILK ddPTM_HeLa_A486_30min_R1 1 NAYAVLYDIILK 12 0 Q06323;H0YKK6 Q06323 PSME1 Proteasome activator complex subunit 1 0 0 84.17 0.026711 0 1106.8 1134 1166.6 843.69 1132.7 1337.4 1451.1 1266.5 1193.5 1427.1 FALSE FALSE TRUE 1029.219036 1044.13771 1618.338763 1964.152958 990.626204 1172.405186 1088.019432 978.1455975 1296.953541 1069.744871 0.962116354 0.976062366 1.512826849 1.836094765 0.926039685 1.095967101 1.017083102 0.914372785 1.212395194 1 10.06305105 NCES(ph)DTEEDIAR ddPTM_HeLa_A485_30min_R1 2 NCESDTEEDIAR 12 0 Q9UIK4 Q9UIK4 DAPK2 Death-associated protein kinase 2 1 0 NCES(0.995)DT(0.005)EEDIAR;NCES(0.985)DT(0.015)EEDIAR ; 194.77 1.08E-13 644950000 523010 554580 561830 751790 733570 485190 765730 587120 572610 1014860 TRUE FALSE FALSE 639351.7701 619433.3068 769674.2967 792858.3841 660533.1951 510593.7982 602125.5301 443127.8994 687527.5747 761874.0791 0.839182993 0.813038957 1.010238198 1.040668538 0.866984733 0.670181349 0.790321585 0.581628791 0.902416283 1 19.53919305 -6.009659675 24.11296145 0.763486675 0.927519787 0.196271461 0.125814347 392.5651763 979944.5275 0.0395675 0.042397269 9.78E-07 6.009659675 0.164033112 NCES(ph)DTEEDIAR ddPTM_HeLa_A486_30min_R1 2 NCESDTEEDIAR 12 0 Q9UIK4 Q9UIK4 DAPK2 Death-associated protein kinase 2 1 0 NCES(1)DTEEDIAR;NCES(1)DTEEDIAR ; 268.44 4.89E-34 820030000 749940 918500 564720 326160 866210 877300 978170 935170 742300 1006820 TRUE FALSE FALSE 697373.0787 845714.7149 783394.7077 759316.9632 757561.8647 769067.6457 733421.52 722252.2056 806643.1617 754705.7187 0.924033118 1.120588719 1.038013478 1.00610999 1.00378445 1.019029837 0.971798016 0.956998453 1.068818139 1 19.52555468 -5.303557877 5.174866631 1.001036606 1.036899028 0.031195157 0.052416836 0.510386007 34.32106621 0.014323439 0.02209432 4.97E-06 5.303557877 0.035862422 NCIVLIDSTPYR ddPTM_HeLa_A485_30min_R1 1 NCIVLIDSTPYR 12 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 123.51 0.0018326 18598000 8862.9 9645.5 10130 12213 16967 8718.3 15271 11363 9910.7 17218 FALSE FALSE TRUE 10834.42153 10773.45732 13877.50854 12880.16527 15277.70591 9174.776707 12008.2261 8576.206434 11899.68658 12925.86947 0.83819673 0.833480281 1.073622828 0.996464129 1.181948026 0.709799579 0.929007222 0.663491648 0.920610146 1 13.65797371 -6.281901356 24.99254765 0.828826555 0.981927989 0.209404318 0.134382473 1245.110174 1520790.193 0.047306937 0.04176785 5.23E-07 6.281901356 0.153101434 NCPHIVVGT(ph)PGR ddPTM_HeLa_A486_30min_R1 2 NCPHIVVGTPGR 12 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;A0A140T9X9;A0A140TA18;F6UJC5;A0A140T996;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 1 0 NCPHIVVGT(1)PGR;NCPHIVVGT(1)PGR ; 85.734 0.0015096 196240000 392450 343950 248880 158131 364330 349460 452540 432280 284670 409610 TRUE FALSE FALSE 364941.2816 316694.1494 345253.0012 368136.9595 318632.3342 306347.1782 339309.7055 333859.2806 309345.4248 307040.9899 1.188575121 1.031439318 1.124452476 1.198983105 1.037751781 0.997740329 1.105095791 1.087344334 1.007505301 1 18.22807174 -5.79751629 24.99429397 1.044824594 1.127588763 0.429241966 0.054019 196.5738835 136186.4039 0.017030075 0.019310903 1.59E-06 5.79751629 0.082764168 NCPHVVVGT(ph)PGR ddPTM_HeLa_A485_30min_R1 2 NCPHVVVGTPGR 12 0 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 1 0 NCPHVVVGT(1)PGR;NCPHVVVGT(1)PGR ; 90.561 0.0026874 778940000 375890 432080 411220 496270 660940 393130 632270 604530 384170 646780 TRUE FALSE FALSE 459505.4337 482607.9974 563347.3903 523379.9735 595134.4929 413713.6789 497180.3493 456268.0696 461269.3952 485549.6491 0.946361375 0.993941605 1.16022613 1.077912371 1.225692355 0.852052266 1.023953679 0.939693954 0.949994292 1 18.8892593 -6.273962015 24.99886405 0.953795646 1.080248985 0.366157452 0.083995517 916.1401284 1828880.09 0.03027393 0.026879194 5.32E-07 6.273962015 0.126453339 NCPHVVVGT(ph)PGR ddPTM_HeLa_A486_30min_R1 4 NCPHVVVGTPGR 12 0 O00148;O00148-2;K7EQN7;O00148-3;K7EPJ3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 1 0 NCPHVVVGT(1)PGR;NCPHVVVGT(1)PGR;NCPHVVVGT(1)PGR;NCPHVVVGT(1)PGR ;;; 100.41 0.0013142 1560630000 877060 790760 612669 417749 935160 919610 1155490 1005630 679200 1049340 TRUE FALSE FALSE 815582.6231 728097.2977 849910.8446 972540.7839 817863.5128 806157.8681 866374.1805 776670.0017 738073.6029 786578.4339 1.036873868 0.925651234 1.080516332 1.236419335 1.039773629 1.024891903 1.101446649 0.987403122 0.9383344 1 19.58523111 -7.40260467 5.445382728 0.967329866 1.06298725 0.230321495 0.074407104 0.365563267 14.64551085 0.046010406 0.021300095 3.96E-08 7.40260467 0.095657384 NCPS(ph)PVLIDCPHPNCNK ddPTM_HeLa_A486_30min_R1 2 NCPSPVLIDCPHPNCNK 17 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 NCPS(1)PVLIDCPHPNCNK;NCPS(1)PVLIDCPHPNCNK ; 194.25 1.79E-18 326750000 269384 270825 150844 128575 249214 312730 400879 374631 256253 374060 TRUE FALSE FALSE 250501.5727 249363.8407 209254.8365 299329.0978 217955.2563 274148.5522 300574.8341 289335.6994 278465.2164 280392.9413 0.893394718 0.889337084 0.746291385 1.067534355 0.777320767 0.977729864 1.071977179 1.031893664 0.993124916 1 18.09709051 -6.506695051 18.86388427 1.026613784 0.878992083 0.428306794 0.08229501 27.16911489 31669.9191 0.028278162 0.024101773 3.11E-07 6.506695051 -0.147621701 NCPS(ph)PVLIDCPHPNCNKK ddPTM_HeLa_A485_30min_R1 5 NCPSPVLIDCPHPNCNKK 18 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK ;;;; 261.49 5.63E-58 8067740000 3291680 2557830 1797160 4786750 4332160 2988300 5664010 4944530 2699920 6611400 TRUE FALSE FALSE 4023902.86 2856945.968 2462004.27 5048238.032 3900834.939 3144762.767 4453847.993 3731876.265 3241769.179 4963299.654 0.810731397 0.575614242 0.496041835 1.017113288 0.785935811 0.633603245 0.897356256 0.751894209 0.653147987 1 22.24286813 -14 0.189098914 2.082118559 0.689519423 0.214742519 0.147459208 224.5602099 2.193212532 92.16672745 0.421371722 1.00E-14 14 -1.392599136 NCPS(ph)PVLIDCPHPNCNKK ddPTM_HeLa_A486_30min_R1 4 NCPSPVLIDCPHPNCNKK 18 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK ;;; 266.46 2.68E-58 7074020000 3029090 2651520 1260870 1551920 2590110 3247340 4476640 4061750 2282450 4447090 TRUE FALSE FALSE 2816766.433 2441403.899 1749112.631 3612948.19 2265234.252 2846716.207 3356537.323 3136978.192 2480294.604 3333509.718 0.844985217 0.732382415 0.524706024 1.083827106 0.679534318 0.853969674 1.006907916 0.941043662 0.744049009 1 21.6686105 -5.751962259 0.971907106 0.909193294 0.730442347 0.164473184 0.149995325 1.032964822 2.092919129 0.070455193 0.11213119 1.77E-06 5.751962259 -0.178750946 NCS(ph)AST(ph)SQER ddPTM_HeLa_A485_30min_R1 1 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 2 0 NCS(0.971)AS(0.032)T(0.972)S(0.025)QER 151.7 8.55E-06 288410000 626970 744190 578240 906160 943160 743230 1078900 1111900 804590 1269200 TRUE FALSE FALSE 766437.3135 831216.5469 792155.0386 955661.2263 849255.6788 782144.3735 848384.2012 839204.7816 966063.8329 952811.7979 0.804395281 0.872382719 0.831386681 1.002990547 0.891315243 0.820880236 0.890400605 0.880766573 1.013908345 1 19.86183175 -13.86568654 0.01850307 2.130287558 3.84E-07 0.386684847 0.058070705 4342.186999 6.199877444 468.0697506 270.6399297 1.36E-14 13.86568654 -2.130287175 NCS(ph)ASTS(ph)QER ddPTM_HeLa_A485_30min_R1 1 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 2 0 NCS(0.951)AS(0.133)T(0.389)S(0.527)QER 127.27 0.0002103 250670000 624650 664500 561250 900850 882510 663760 995530 1021300 730380 1256800 TRUE FALSE FALSE 763601.2375 742207.4946 768879.7306 950061.1544 794644.2057 698513.4472 782826.8828 770824.5737 876960.5666 943502.8897 0.809325807 0.786651003 0.814920377 1.006950975 0.842227633 0.740340549 0.829702687 0.816981678 0.929473111 1 19.84766741 -7.947445923 3.438972763 0.999128763 0.832142709 0.421626409 0.065133076 0.21668819 5.451009443 0.067263228 0.017879079 1.13E-08 7.947445923 -0.166986054 NCS(ph)ASTS(ph)QER ddPTM_HeLa_A486_30min_R1 2 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 2 0 NCS(0.966)AS(0.034)TS(1)QER;NCS(0.992)AS(0.012)T(0.017)S(0.979)QER ; 216.81 1.58E-16 641980000 1594870 1232130 1111160 669130 1370420 1865410 1977660 1831100 1529950 2398300 TRUE FALSE FALSE 1483077.849 1134491.531 1541430.91 1557768.456 1198529.145 1635274.68 1482828.55 1414198.503 1662567.298 1797750.07 0.82496331 0.631061876 0.85742225 0.866510024 0.666682853 0.909622927 0.824824638 0.786649116 0.924804469 1 20.77776103 -10.93100449 0.129461412 1.310202229 0.685409184 0.391453 0.08346914 53.56777446 1.014676173 5.77439705 0.799207291 1.17E-11 10.93100449 -0.624793045 NCS(ph)ASTSQER ddPTM_HeLa_A486_30min_R1 2 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 NCS(0.431)AS(0.343)T(0.113)S(0.113)QER;NCS(0.462)AS(0.462)T(0.073)S(0.002)QER ; 128.33 9.39E-05 10562000000 699170 580530 866930 240495 792450 734860 708800 639200 772730 812780 TRUE FALSE FALSE 650161.7935 534526.6885 1202628.513 559884.5139 693053.5317 644200.4447 531450.7431 493668.1136 839710.8586 609254.5977 1.067143024 0.87734535 1.973934243 0.918966416 1.137543376 1.057358364 0.872296648 0.810282131 1.378259371 1 19.21668571 NCSASTS(ph)QER ddPTM_HeLa_A485_30min_R1 6 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 NCSAST(0.089)S(0.91)QER;NCS(0.002)AS(0.003)T(0.009)S(0.986)QER;NCSAST(0.003)S(0.997)QER;NCS(0.001)AS(0.002)T(0.014)S(0.984)QER;NCSAS(0.009)T(0.002)S(0.989)QER;NCSAS(0.001)T(0.003)S(0.996)QER ;;;;; 193.46 3.36E-10 7032344000 5077217 6674340 5655670 6956400 7941800 5535270 8685180 8740720 6103660 9764530 TRUE FALSE FALSE 6206626.405 7454846.004 7747937.685 7336410.517 7151086.507 5825088.178 6829520.342 6597044.715 7328608.576 7330412.374 0.846695396 1.016974984 1.056957957 1.000818255 0.975536729 0.794646724 0.931669324 0.89995547 0.99975393 1 22.80546293 -6.026792015 24.94046459 0.915549144 0.98841426 0.107482656 0.074225912 1266.917266 1179360.555 0.024453793 0.02452311 9.40E-07 6.026792015 0.072865116 NCSASTS(ph)QER ddPTM_HeLa_A486_30min_R1 3 NCSASTSQER 10 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F8WEP2 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 NCS(0.001)AS(0.003)T(0.01)S(0.986)QER;NCS(0.088)AS(0.039)T(0.027)S(0.847)QER;NCSAS(0.009)T(0.006)S(0.984)QER ;; 135.81 4.40E-05 477624000 768880 647940 793350 286336 834500 845910 830880 785190 855540 1015740 TRUE FALSE FALSE 714985.4825 596594.8746 1100556.367 666604.6786 729829.2286 741550.2248 622985.0358 606419.3776 929698.896 761392.0926 0.939050312 0.783558012 1.445452845 0.875507751 0.958545847 0.973940013 0.818218421 0.796461355 1.22105142 1 19.53828006 NCVAIAADRR ddPTM_HeLa_A486_30min_R1 1 NCVAIAADRR 10 1 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 77.192 0.022887 43962000 24302 21049 23128 13181 38219 22648 33798 37149 18873 36468 FALSE FALSE TRUE 22598.5553 19381.00058 32083.78099 30686.03413 33425.21664 19853.92003 25341.38292 28690.98366 20508.92684 27336.17543 0.826690455 0.708987277 1.173674828 1.122543064 1.222746639 0.726287409 0.927027374 1.049561001 0.750248581 1 14.73852379 -9.686653914 13.79541751 1.00001197 0.954533161 0.00583025 0.181229296 0 0 0.183106051 0.04440974 2.06E-10 9.686653914 -0.045478809 NCWQNYLDFHR ddPTM_HeLa_A486_30min_R1 1 NCWQNYLDFHR 11 0 A0A494C160;P14854 A0A494C160 COX6B1 Cytochrome c oxidase subunit 6B1 0 0 111.52 0.0017556 66481000 67615 66152 53066 36543 74127 61060 80162 76262 64682 87655 FALSE FALSE TRUE 62875.53766 60909.8746 73614.57636 85073.95078 64829.30045 53527.03801 60104.61973 58898.80739 70288.68784 65705.61746 0.956927887 0.927011676 1.1203696 1.29477439 0.986662982 0.814649342 0.914756182 0.896404442 1.069751576 1 16.0037291 -5.992650968 24.99967589 0.927730957 1.076629327 0.24336757 0.112046497 257.1990541 874922.6895 0.037410342 0.042335462 1.02E-06 5.992650968 0.14889837 NDAPTPGTSTT(ph)PGLR ddPTM_HeLa_A486_30min_R1 2 NDAPTPGTSTTPGLR 15 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 NDAPT(0.001)PGT(0.321)S(0.194)T(0.119)T(0.365)PGLR;NDAPTPGT(0.038)S(0.19)T(0.19)T(0.582)PGLR ; 97.235 0.0037053 1502670000 1422290 1302570 865850 573800 1339790 1195370 1520300 1376930 1104250 1624350 TRUE FALSE FALSE 1322594.816 1199349.609 1201130.308 1335835.398 1171741.045 1047897.403 1139904.86 1063433.097 1199967.279 1217602.187 1.086229008 0.985009408 0.986471871 1.097103317 0.962334872 0.860623785 0.936188249 0.873383038 0.985516691 1 20.21561142 -5.98839937 20.08490546 0.922203608 1.030960407 0.47528332 0.052869788 17.50057933 30297.06326 0.015746186 0.017816741 1.03E-06 5.98839937 0.108756799 NDDDEEEAAR ddPTM_HeLa_A485_30min_R1 2 NDDDEEEAAR 10 0 E7EX44;Q05682-3;Q05682-6;Q05682-2;C9JE79;F8WE61;C9JEK3;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 0 0 ; ; 147.78 0.00020012 271130000 159649 194459 154531 225830 259530 174615 262890 255960 178784 277230 FALSE FALSE TRUE 195162.3693 217199.2885 211698.4475 238166.5211 233690.2819 183757.5714 206721.4039 193185.4087 214664.3089 208121.663 0.937732125 1.043616918 1.017186027 1.144361993 1.122854193 0.882933418 0.99327192 0.928233063 1.03143664 1 17.66706762 -6.255985028 24.9919733 0.964320632 1.055689925 0.302415686 0.065159863 584.9135227 2680089.346 0.022496133 0.02188285 5.55E-07 6.255985028 0.091369293 NDDDEEEAAR ddPTM_HeLa_A486_30min_R1 2 NDDDEEEAAR 10 0 E7EX44;Q05682-3;Q05682-6;Q05682-2;C9JE79;F8WE61;C9JEK3;Q05682;Q05682-5;Q05682-4;E9PGZ1;C9J813 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 0 0 ; ; 164.85 2.01E-05 258010000 224440 227830 166118 114669 285680 251310 313810 288830 189001 289600 FALSE FALSE TRUE 208707.915 209775.9211 230443.3384 266955.2271 249847.3505 220305.9273 235291.4189 223069.7141 205383.7589 217082.275 0.961423106 0.966342927 1.061548385 1.229742166 1.150933905 1.01484991 1.083881302 1.027581428 0.946110219 1 17.72788241 -9.561373761 9.778308688 1.000010915 1.054768237 0.025796491 0.084515538 0 0 0.090010986 0.021830871 2.75E-10 9.561373761 0.054757322 NDDISELEDLS(ph)ELEDLKDAK ddPTM_HeLa_A486_30min_R1 1 NDDISELEDLSELEDLKDAK 20 1 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 NDDIS(0.004)ELEDLS(0.996)ELEDLKDAK 49.902 0.018464 8000700 14648 18228 6435.9 14051 13976 19370 30654 27250 13153 37132 TRUE FALSE FALSE 13621.25084 16783.54689 8928.052839 32711.4381 12222.99976 16980.32634 22984.04498 21045.76986 14293.11263 27833.90551 0.489376198 0.602989289 0.320761771 1.175237089 0.439140664 0.610059064 0.825757096 0.7561199 0.513514448 1 14.76455573 -14 0.075230097 2.046751022 0.292883833 0.195629125 0.226215495 485.8374446 2.604077097 88.69808262 9.479699032 1.00E-14 14 -1.753867189 NDEELNK ddPTM_HeLa_A485_30min_R1 2 NDEELNK 7 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q8IUE6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P16104;Q96QV6;Q9BTM1;REV__H0YBA5 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2A.J 0 0 ; ; 189.78 1.32E-05 182102000 257620 163712 95525 493940 174628 159461 268490 214175 176648 700200 FALSE FALSE TRUE 314926.6802 182856.6943 130863.6726 520922.6915 157241.4232 167810.1314 211124.9181 161648.2454 212099.6333 525653.0262 0.599115128 0.347865769 0.248954474 0.991001032 0.29913539 0.319241254 0.401643114 0.30751891 0.403497407 1 19.00375129 -10.27343004 3.384674772 1.0019479 0.431449334 0.400905778 0.207032996 126284183.5 185835618 2557612.655 0.051929429 5.33E-11 10.27343004 -0.570498565 NDEELNK ddPTM_HeLa_A486_30min_R1 2 NDEELNK 7 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q8IUE6;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q93077;P16104;Q96QV6;Q9BTM1;REV__H0YBA5 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2A.J 0 0 ; ; 114.5 0.015837 34771000 23361 18369.4 12492.8 16623.5 18529.3 35918 28714 22200.6 26287 41199 FALSE FALSE TRUE 21723.51454 16913.74184 17330.34673 38700.34811 16205.18242 31486.80235 21529.45349 17146.00802 28565.57833 30882.50224 0.703424689 0.547680422 0.561170419 1.253148071 0.524736703 1.019567718 0.697140838 0.555201385 0.92497616 1 14.91450203 -14 0.033336282 2.143257019 4.05E-12 0.114279943 0.226837979 3054.497937 7.630262923 401.7352706 147.0976178 1.00E-14 14 -2.143257019 NDEELNKLLGK ddPTM_HeLa_A485_30min_R1 1 NDEELNKLLGK 11 1 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;Q9BTM1;Q9BTM1-2 A0A0U1RR32;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A.J 0 0 171.57 1.35E-06 47773000 52601 63512 34860 61449 87253 81412 129150 160940 46145 115070 FALSE FALSE TRUE 64301.91098 70939.17592 47756.16465 64805.80327 78565.78496 85674.60643 101556.0474 121469.2127 55405.87823 86385.16671 0.744362874 0.821196261 0.552828298 0.750195962 0.909482356 0.991774511 1.175619048 1.406135073 0.641381852 1 16.39849599 -6.026009056 1.955233997 1.082601045 0.709642414 0.392716222 0.189436882 0.320116549 2.455425904 0.070002738 0.075504396 9.42E-07 6.026009056 -0.372958631 NDGEES(ph)TDRTPLLPGAPR ddPTM_HeLa_A486_30min_R1 1 NDGEESTDRTPLLPGAPR 18 1 Q9NRA2-2;Q9NRA2 Q9NRA2-2 SLC17A5 Sialin 1 0 NDGEES(0.51)T(0.488)DRT(0.001)PLLPGAPR 64.68 0.0065095 62147000 52785 53749 30339 19502 60473 62693 67784 60792 58486 78753 TRUE FALSE FALSE 49085.04408 49489.73349 42087.07331 45401.64158 52887.91245 54958.57508 50823.72625 46950.98868 63555.61357 59032.7362 0.831488548 0.838343886 0.712944648 0.769092617 0.8959082 0.930984715 0.860941395 0.795338175 1.076616428 1 15.84922759 -7.239257166 0.494439983 1.01565042 0.789281128 0.478059554 0.074716427 0.867817336 0.496503926 0.080785571 0.056209776 5.76E-08 7.239257166 -0.226369293 NDGVGQIS(ph)GFY(ph)VGRLMVRLT(ph)K ddPTM_HeLa_A485_30min_R1 1 NDGVGQISGFYVGRLMVRLTK 21 2 Q9BRQ8-2;Q9BRQ8 Q9BRQ8-2 AIFM2 Apoptosis-inducing factor 2 3 0 NDGVGQIS(1)GFY(1)VGRLMVRLT(1)K 43.12 0.029311 62934000 2172.5 0 1573.5 1914 2396.1 0 2617.6 1480.1 1960.1 1506.6 TRUE FALSE FALSE 2655.76513 0 2155.603129 2018.556973 2157.535871 0 2058.328376 1117.103154 2353.474091 1131.032347 2.348089458 0 1.905872219 1.784703133 1.907581049 0 1.81986694 0.987684532 2.080819437 1 10.14342447 NDIS(ph)PPGR ddPTM_HeLa_A485_30min_R1 1 NDISPPGR 8 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 NDIS(1)PPGR 64.64 0.024552 527570000 805710 820700 643600 1435100 1115200 785080 1292900 1073500 687280 1709400 TRUE FALSE FALSE 984937.4098 916673.7259 881694.4224 1513495.879 1004166.772 826185.5748 1016661.353 810222.4418 825210.7919 1283278.039 0.767516765 0.714321992 0.687064218 1.179398254 0.78250133 0.643808707 0.792237786 0.631369366 0.643049103 1 20.29140235 -6.001728725 24.99898844 0.721183986 0.838011799 0.06369904 0.16203218 167.8555489 2427408.55 0.051355037 0.057390096 9.96E-07 6.001728725 0.116827814 NDIS(ph)PPGR ddPTM_HeLa_A486_30min_R1 2 NDISPPGR 8 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 NDIS(1)PPGR;NDIS(1)PPGR ; 109.39 0.0012552 1009030000 2102190 2060390 1349590 1504620 2062710 2356800 3092100 2762500 1815590 3786500 TRUE FALSE FALSE 1954837.337 1897117.193 1872187.391 3502831.399 1803985.678 2066041.978 2318423.875 2133539.055 1972966.803 2838335.754 0.688726601 0.66839069 0.659607444 1.234114531 0.635578675 0.727906124 0.816825096 0.751686636 0.695113959 1 21.43661383 -11.45603924 2.148873993 3.211641145 0.768469371 0.154770801 0.165032503 10536260.74 783316.4144 113574607.7 0.044288569 3.50E-12 11.45603924 -2.443171774 NDKS(ph)EEEQS(ph)S(ph)SSVKKDETNVK ddPTM_HeLa_A485_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 3 0 NDKS(0.992)EEEQS(0.935)S(0.391)S(0.357)S(0.325)VKKDET(0.001)NVK 57.803 0.017752 579920000 163140 68733 50637 795540 147740 157660 354860 169830 68299 1151200 TRUE FALSE FALSE 199429.9302 76770.72645 69369.73348 838998.3358 133030.4869 165914.8338 279041.2621 128178.9262 82005.98282 864227.0263 0.230761043 0.088831666 0.080267952 0.970807797 0.153930024 0.191980612 0.322879583 0.148316267 0.094889399 1 19.72105082 -10.72871775 5.792300561 1.019883234 0.258970792 0.444136927 0.250432116 0.062950371 0.002948276 0.237379961 0.060019129 1.87E-11 10.72871775 -0.760912442 NDKS(ph)EEEQS(ph)S(ph)SSVKKDETNVK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 3 0 NDKS(1)EEEQS(0.993)S(0.373)S(0.334)S(0.299)VKKDETNVK 85.489 0.0011288 554740000 149920 137180 18859 487580 70124 314270 562970 395760 109780 996490 TRUE FALSE FALSE 139411.3822 126309.3572 26161.70986 1135110.881 61328.39404 275498.5627 422108.9515 305654.0874 119295.8188 746962.4179 0.186637746 0.169097339 0.035024131 1.519635866 0.082103721 0.368825199 0.565100655 0.409196072 0.159707926 1 19.51067613 -10.96875123 2.698994339 1.493171643 0.401028498 0.16693485 0.409019458 257607692 122985396.7 793968697.6 0.100677416 1.07E-11 10.96875123 -1.092143145 NDKS(ph)EEEQS(ph)SSS(ph)VKKDETNVK ddPTM_HeLa_A485_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 3 0 NDKS(0.999)EEEQS(0.732)S(0.279)S(0.285)S(0.703)VKKDET(0.002)NVK 49.559 0.02871 1105200000 128180 55190 29746 557820 113880 87386 263390 145060 41543 760580 TRUE FALSE FALSE 156693.1988 61643.99041 40750.28323 588292.2941 102541.7073 91961.39584 207114.5748 109483.8076 49880.29905 570981.4034 0.27442785 0.107961468 0.071368845 1.030317784 0.179588524 0.161058478 0.362734361 0.191746713 0.087358885 1 19.12308423 -10.48147178 4.836773552 1.002236683 0.279543085 0.399651172 0.266844309 0.006563823 0.000703677 0.263499988 0.063750312 3.30E-11 10.48147178 -0.722693598 NDKS(ph)EEEQS(ph)SSS(ph)VKKDETNVK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 3 0 NDKS(1)EEEQS(0.996)S(0.009)S(0.178)S(0.817)VKKDETNVK 146.34 1.36E-09 667770000 560040 399170 56828 1486900 230920 842590 1699600 1234900 316330 3100700 TRUE FALSE FALSE 520784.088 367538.3154 78833.32351 3461578.344 201955.8604 738639.8126 1274342.103 953740.2277 343749.7391 2324264.538 0.224064034 0.158131017 0.033917535 1.489322015 0.086890221 0.31779507 0.548277566 0.410340653 0.147896134 1 21.14834285 -10.86420184 2.492400497 1.279312356 0.391016963 0.17765198 0.399746135 62308657.2 36510058.63 103074672.2 0.105311597 1.37E-11 10.86420184 -0.888295394 NDKS(ph)EEEQSSSS(ph)VKKDETNVK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKS(1)EEEQS(0.013)S(0.054)S(0.227)S(0.706)VKKDETNVK 117.03 1.95E-05 868260000 298990 221280 34524 605340 145750 439060 874730 643410 182800 1263900 TRUE FALSE FALSE 278032.345 203744.9669 47892.61738 1409262.112 127468.6759 384893.2412 655863.302 496919.5885 198645.2512 947411.2134 0.293465331 0.215054418 0.050551035 1.487487262 0.134544192 0.406257849 0.692268883 0.524502541 0.209671628 1 19.85363122 -11.60420715 2.018663884 9.998962444 0.457413996 0.151538887 0.392441309 20841973.4 811045.0185 861718618.6 0.101180381 2.49E-12 11.60420715 -9.541548448 NDKS(ph)EEEQSSSSVK ddPTM_HeLa_A485_30min_R1 10 NDKSEEEQSSSSVK 14 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(0.98)EEEQS(0.02)SSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(0.993)EEEQS(0.007)SSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK ;;;;;;;;; 311.54 5.45E-69 24550350000 9261470 4481760 2965549 23819790 8641600 5605980 13344890 7372160 5078070 31801200 TRUE FALSE FALSE 11321652.05 5005862.846 4062628.982 25121004.81 7781211.962 5899500.444 10493645.23 5564126.201 6097192.07 23873746.1 0.474230228 0.20968066 0.170171408 1.052243947 0.325931755 0.247112473 0.439547492 0.233064647 0.255393186 1 24.50892163 -10.31614484 4.101957672 1.0009699 0.379408228 0.368690477 0.243938807 688813935.1 1379681039 8403853.914 0.062184843 4.83E-11 10.31614484 -0.621561672 NDKS(ph)EEEQSSSSVK ddPTM_HeLa_A486_30min_R1 7 NDKSEEEQSSSSVK 14 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(1)EEEQSSSSVK;NDKS(0.85)EEEQS(0.149)S(0.002)SSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK ;;;;;; 300.33 4.69E-57 13643270000 3388200 2784720 989742 3014382 2037060 4377780 6235790 5038420 2465180 7468640 TRUE FALSE FALSE 3150704.677 2564048.645 1372996.609 7017633.634 1781552.94 3837694.014 4675529.387 3891281.754 2678863.787 5598443.931 0.562782215 0.457993092 0.245246112 1.253497172 0.318222878 0.68549298 0.835148024 0.695064879 0.478501494 1 22.41659446 -14 0.053510887 2.285618899 1.36E-10 0.155563122 0.271351943 966.1687843 3.79946179 176.7352345 35.56760621 1.00E-14 14 -2.285618899 NDKS(ph)EEEQSSSSVKK ddPTM_HeLa_A485_30min_R1 4 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(1)EEEQSSSSVKK;NDKS(0.995)EEEQS(0.002)S(0.002)SSVKK;NDKS(1)EEEQSSSSVKK;NDKS(0.988)EEEQS(0.011)SSSVKK ;;; 226.45 3.65E-34 8196300000 3538360 1889192 763325 7244050 2490473 2504275 6104220 3906365 1707468 10205370 TRUE FALSE FALSE 4325455.975 2110116.571 1045710.682 7639774.109 2242512.764 2635394.967 4800003.53 2948322.859 2050141.166 7661359.075 0.564580766 0.27542327 0.136491538 0.997182619 0.292704302 0.343985309 0.626521154 0.384830267 0.267594972 1 22.86916891 -10.04941702 4.15742418 1.000060024 0.43309062 0.348256968 0.233045225 449495952.8 907046988.1 398124.8324 0.055942552 8.92E-11 10.04941702 -0.566969405 NDKS(ph)EEEQSSSSVKK ddPTM_HeLa_A486_30min_R1 6 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(1)EEEQSSSSVKK;NDKS(1)EEEQSSSSVKK;NDKS(1)EEEQSSSSVKK;NDKS(0.861)EEEQS(0.036)S(0.101)S(0.002)SVKK;NDKS(1)EEEQSSSSVKK;NDKS(1)EEEQSSSSVKK ;;;;; 195.56 3.73E-19 9647710000 5638630 3482400 854515 4542990 2369190 5430990 8951420 6995410 2996180 13533750 TRUE FALSE FALSE 5243391.155 3206441.941 1185406.093 10576310.31 2072024.098 4760969.672 6711680.038 5402707.852 3255891.295 10144810.91 0.516854498 0.316067196 0.116848515 1.042534001 0.204244723 0.469300977 0.661587495 0.532558753 0.320941546 1 23.27423864 -14 0.326435584 6.22018396 0.446605499 0.2907216 0.248357387 448.4149204 3.924404753 1622.30159 0.212178082 1.00E-14 14 -5.773578461 NDKSEEEQS(ph)S(ph)SSVKKDETNVK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKS(0.104)EEEQS(0.822)S(0.393)S(0.35)S(0.327)VKKDET(0.003)NVK 47.237 0.022373 128260000 66552 48255 16892 118250 39963 96325 173630 137790 44321 259390 TRUE FALSE FALSE 61887.04847 44431.09806 23433.03478 275291.976 34950.4679 84441.40086 130185.9375 106418.2249 48162.77997 194437.0557 0.318288344 0.228511473 0.12051733 1.415841107 0.179752094 0.434286564 0.669553121 0.547314526 0.24770371 1 17.56894367 -11.60093565 2.05070104 9.999878312 0.472972976 0.168416528 0.357673876 16979587.4 718031.3274 712766022.7 0.096359267 2.51E-12 11.60093565 -9.526905336 NDKSEEEQS(ph)SS(ph)SVKK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKS(0.024)EEEQS(0.936)S(0.125)S(0.483)S(0.431)VKK 58.997 0.020265 262230000 192920 138500 80243 151680 128600 185020 277820 215970 139740 494190 TRUE FALSE FALSE 179397.3042 127524.7556 111315.2386 353118.7055 112469.7889 162194.1135 208306.4975 166798.3456 151852.7757 370441.6074 0.484279575 0.344250627 0.300493347 0.953237159 0.303610034 0.437839893 0.562319387 0.450268928 0.40992365 1 18.49888662 -10.05013729 4.09268256 1.000065134 0.473255505 0.440039075 0.178745202 119553211.6 237243988.7 112243.49 0.043512718 8.91E-11 10.05013729 -0.526809629 NDKSEEEQS(ph)SS(ph)SVKKDETNVK ddPTM_HeLa_A485_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKSEEEQS(0.812)S(0.223)S(0.556)S(0.407)VKKDET(0.002)NVK 83.362 0.0012682 347050000 192010 97066 49290 847640 190860 196120 572050 324360 90395 1393500 TRUE FALSE FALSE 234721.9621 108417.0243 67524.42213 893944.4269 171857.3082 206388.5399 449826.8443 244810.2014 108536.4473 1046126.095 0.224372533 0.103636669 0.064547116 0.85452837 0.164279726 0.197288397 0.429992948 0.234015959 0.103750827 1 19.99662533 -10.90670501 2.513889007 1.425369175 0.269927257 0.501298642 0.220143211 29288548.79 15673566.23 73553474.83 0.058308976 1.24E-11 10.90670501 -1.155441918 NDKSEEEQS(ph)SSS(ph)VKK ddPTM_HeLa_A485_30min_R1 1 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKS(0.006)EEEQS(0.929)S(0.075)S(0.243)S(0.747)VKK 74.047 0.0050055 115440000 165950 110270 74457 342510 118900 145800 235150 198740 124730 422300 TRUE FALSE FALSE 202865.005 123165.1173 102001.7427 361220.454 107061.8985 153433.8626 184908.2815 149998.7034 149762.1669 317028.3819 0.639895406 0.38849871 0.321743253 1.139394687 0.33770446 0.483975162 0.583254661 0.473139668 0.472393563 1 18.27425248 -10.9839584 2.461353953 1.422971311 0.536697331 0.279851991 0.22243695 32398530.22 13459572.01 77881595.14 0.05515587 1.04E-11 10.9839584 -0.88627398 NDKSEEEQS(ph)SSS(ph)VKKDETNVK ddPTM_HeLa_A485_30min_R1 2 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKSEEEQS(0.965)S(0.04)S(0.242)S(0.753)VKKDETNVK;NDKS(0.003)EEEQS(0.99)S(0.008)S(0.141)S(0.857)VKKDETNVK ; 173.59 3.25E-14 2293700000 1022030 407790 160781 4292200 980770 807230 2636700 1528770 460740 6338900 TRUE FALSE FALSE 1249377.048 455477.4932 220260.5826 4526672.018 883121.0951 849495.3146 2073347.505 1153836.76 553206.2918 4758728.889 0.26254428 0.095714109 0.046285592 0.951235534 0.185579199 0.178513072 0.435693555 0.242467429 0.116250853 1 22.18214483 -11.01110002 2.927847739 1.770931882 0.28465704 0.433129372 0.247259345 302402618 282818246.1 1566116494 0.062537441 9.75E-12 11.01110002 -1.486274842 NDKSEEEQS(ph)SSS(ph)VKKDETNVK ddPTM_HeLa_A486_30min_R1 2 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 NDKS(0.003)EEEQS(0.985)S(0.014)S(0.065)S(0.933)VKKDETNVK;NDKSEEEQS(1)S(0.005)S(0.176)S(0.82)VKKDETNVK ; 150.59 7.48E-10 1895120000 701180 448740 93177 1466340 278277 1029130 2020110 1461250 366460 2937400 TRUE FALSE FALSE 652030.9029 413180.2081 129257.6298 3413713.625 243372.9038 902166.404 1514657.111 1128555.274 398225.0479 2201855.921 0.29612787 0.187650883 0.058703945 1.55038011 0.110530803 0.40972999 0.687900192 0.512547285 0.180858813 1 21.07028864 -11.53172663 2.15471036 8.610250762 0.455903914 0.139637194 0.413186315 24479768.54 1384824.487 911669345 0.102583248 2.94E-12 11.53172663 -8.154346849 NDKSEEEQSS(ph)SSVK ddPTM_HeLa_A486_30min_R1 2 NDKSEEEQSSSSVK 14 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQS(0.217)S(0.656)S(0.127)SVK;NDKSEEEQS(0.102)S(0.664)S(0.102)S(0.132)VK ; 141.07 3.57E-07 333680000 411010 372470 184127 376397 345780 601690 760940 629200 357230 835630 TRUE FALSE FALSE 382200.3215 342954.1207 255425.9055 876271.2381 302409.0481 527459.6053 570544.7636 485944.8953 388194.984 626382.809 0.610170516 0.547515219 0.40777924 1.398938837 0.482786315 0.842072288 0.910856357 0.77579539 0.619740801 1 19.25668509 NDKSEEEQSSS(ph)SVK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVK 14 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(0.108)EEEQS(0.105)S(0.105)S(0.682)SVK 307.3 4.10E-58 3213800000 846520 680160 221260 731800 526060 1038300 1808000 1335600 561750 1951900 TRUE FALSE FALSE 787183.3194 626261.6445 306937.7975 1703667.383 460076.6495 910205.1027 1355619.277 1031513.036 610442.9423 1463131.535 0.538012681 0.42802826 0.209781411 1.164397966 0.31444654 0.622093831 0.926519075 0.705003625 0.417216722 1 20.48062804 -14 0.05986419 2.397055964 4.55E-10 0.184898573 0.268842668 702.9099136 3.067770554 145.986648 24.38329341 1.00E-14 14 -2.397055963 NDKSEEEQSSS(ph)SVKK ddPTM_HeLa_A485_30min_R1 1 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQSS(0.016)S(0.611)S(0.373)VKK 134.29 5.39E-06 908040000 330660 141640 70521 755320 190720 203180 492610 281400 167710 977000 TRUE FALSE FALSE 404214.1762 158203.5659 96609.65252 796581.219 171731.2471 213818.1906 387359.8492 212386.2088 201367.8587 733451.8804 0.551112059 0.215697267 0.131719142 1.086071548 0.234141123 0.291523134 0.528132601 0.289570747 0.274548152 1 19.48434279 -10.41076142 3.096712633 1.008982834 0.39954126 0.321508373 0.261362295 105912144.6 133333488.9 8415695.732 0.067916575 3.88E-11 10.41076142 -0.609441574 NDKSEEEQSSS(ph)SVKKDETNVK ddPTM_HeLa_A485_30min_R1 2 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQS(0.001)S(0.001)S(0.614)S(0.383)VKKDETNVK;NDKSEEEQSS(0.051)S(0.686)S(0.263)VKKDETNVK ; 224.21 6.46E-35 5855700000 1782850 706151 380475 6200620 1609140 1497890 4253250 2975260 935867 9327920 TRUE FALSE FALSE 2179438.832 788729.2168 521228.5354 6539344.17 1448928.372 1576317.204 3344508.392 2245572.82 1123686.923 7002641.212 0.311230972 0.112633104 0.074433135 0.933839672 0.206911696 0.225103237 0.477606704 0.320675121 0.160466157 1 22.73946774 -10.82893484 2.739205725 1.231760252 0.318232413 0.434253829 0.234966414 174147412.8 122702201.2 265770025.9 0.061052601 1.48E-11 10.82893484 -0.91352784 NDKSEEEQSSS(ph)SVKKDETNVK ddPTM_HeLa_A486_30min_R1 1 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQS(0.004)S(0.023)S(0.67)S(0.302)VKKDETNVK 134.03 4.47E-06 2377000000 556680 319220 75467 851430 273670 762470 1463400 1159600 305400 1914800 TRUE FALSE FALSE 517659.6067 293923.8446 104689.8435 1982172.069 239343.7567 668404.2036 1097241.842 895584.3939 331872.3179 1435321.617 0.36065757 0.204779083 0.072938248 1.380995065 0.166752701 0.465682531 0.764457129 0.623960779 0.231218087 1 20.45294261 -14 0.076279242 2.458363553 4.76E-14 0.153092746 0.365514755 558.5982806 3.030496182 144.6858343 15.00252273 1.00E-14 14 -2.458363553 NDKSEEEQSSSS(ph)VKK ddPTM_HeLa_A485_30min_R1 1 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQSS(0.003)S(0.204)S(0.793)VKK 131.18 7.71E-06 131420000 131330 64461 33470 251280 75880 81288 172780 113970 58677 329170 TRUE FALSE FALSE 160543.9054 71999.15321 45851.9458 265006.7901 68325.12077 85544.11398 135864.1415 86018.6788 70452.93568 247113.9769 0.649675536 0.291360101 0.185549787 1.072407127 0.276492336 0.346172706 0.549803549 0.348093134 0.285102998 1 17.91481709 -10.65683358 2.756603992 1.06292882 0.443642663 0.312277609 0.247097252 99864818.11 91225003.26 44473372.85 0.06287999 2.20E-11 10.65683358 -0.619286158 NDKSEEEQSSSS(ph)VKK ddPTM_HeLa_A486_30min_R1 2 NDKSEEEQSSSSVKK 15 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQSS(0.002)S(0.173)S(0.825)VKK;NDKSEEEQSS(0.001)S(0.051)S(0.947)VKK ; 204.63 8.85E-26 1802050000 908940 449160 120270 586880 231090 843840 1196300 812430 442180 1889100 TRUE FALSE FALSE 845227.9998 413566.9258 166841.7649 1366286.299 202104.5374 739735.6003 896973.0868 627457.4242 480508.5184 1416057.064 0.596888375 0.292055268 0.117821357 0.964852571 0.142723441 0.522391095 0.633430043 0.443101793 0.339328499 1 20.43344797 -11.11917543 2.332432894 2.044685812 0.449239788 0.32394707 0.238232957 39268109.98 10406106.27 217327681.2 0.058446533 7.60E-12 11.11917543 -1.595446024 NDKSEEEQSSSS(ph)VKKDETNVK ddPTM_HeLa_A485_30min_R1 2 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQSS(0.001)S(0.208)S(0.79)VKKDET(0.001)NVK;NDKSEEEQSS(0.001)S(0.157)S(0.842)VKKDETNVK ; 137.32 4.16E-07 4486200000 1191270 457590 257712 4283470 1097850 924230 3059980 1954070 607040 6146300 TRUE FALSE FALSE 1456263.902 511101.17 353050.3931 4517465.12 988544.1992 972621.2537 2406190.275 1474831.269 728867.3599 4614140.524 0.315608919 0.110768445 0.076514877 0.979048015 0.214242326 0.210791424 0.521481793 0.319632933 0.157963841 1 22.13763051 -10.46235898 2.930700606 1.017820822 0.327959925 0.39655607 0.25050826 44766375.58 51704255.48 6535763.82 0.066279877 3.45E-11 10.46235898 -0.689860897 NDKSEEEQSSSS(ph)VKKDETNVK ddPTM_HeLa_A486_30min_R1 4 NDKSEEEQSSSSVKKDETNVK 21 3 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQS(0.001)S(0.007)S(0.07)S(0.923)VKKDETNVK;NDKSEEEQSS(0.003)S(0.185)S(0.812)VKKDETNVK;NDKSEEEQSSS(0.003)S(0.997)VKKDETNVK;NDKSEEEQS(0.001)S(0.007)S(0.045)S(0.947)VKKDETNVK ;;; 207.6 5.85E-26 13952990000 4343850 2840460 487590 6723930 2058120 6111050 11454300 9245640 2291890 14848900 TRUE FALSE FALSE 4039368.547 2615371.605 676397.9061 15653648.85 1799971.398 5357130.784 8588312.989 7140609.603 2490552.871 11130638.79 0.362905366 0.234970486 0.060769011 1.406356737 0.161713216 0.481295897 0.771592103 0.641527386 0.223756508 1 23.40803306 -14 0.074305945 2.433281189 8.93E-16 0.142411553 0.373472126 605.2540371 3.20919679 151.673273 16.64852579 1.00E-14 14 -2.433281189 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK ddPTM_HeLa_A485_30min_R1 1 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 41 0 P68104;A0A087WVQ9;A0A087WV01 P68104 EEF1A1 Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 97.758 1.99E-08 8669800 5300.7 4646.4 3149.1 5141.4 6631.3 3199 7338.6 4431 3942.2 11931 FALSE FALSE TRUE 6479.822428 5189.756062 4314.083135 5422.261663 5971.064488 3366.494693 5770.648159 3344.290302 4733.36338 8956.821274 0.723451125 0.579419406 0.481653368 0.605377901 0.666649954 0.375858197 0.644274122 0.373379149 0.528464646 1 13.1287711 -10.03242034 4.90500178 1.000007082 0.548888109 0.592949352 0.111014513 28192083.48 57662527.79 1537.896714 0.026321152 9.28E-11 10.03242034 -0.451118974 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK ddPTM_HeLa_A486_30min_R1 1 NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 41 0 P68104;A0A087WVQ9;A0A087WV01 P68104 EEF1A1 Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 224.29 2.95E-65 10225000 13883 12510 11617 4953.8 18198 17432 18964 18273 14425 16594 FALSE FALSE TRUE 12909.87339 11518.66204 16115.41351 11532.69675 15915.43715 15281.41708 14219.00662 14112.6368 15675.37061 12438.75439 1.037875095 0.926030186 1.295580973 0.927158491 1.279504093 1.228532745 1.143121423 1.134569938 1.260204207 1 13.6025544 -4.745196154 24.99979655 1.161389383 0.981952591 0.270502633 0.115952331 298.2773344 459068.5951 0.027818941 0.073109238 1.80E-05 4.745196154 -0.179436792 NDQEPPPEALDFS(ph)DDEKEK ddPTM_HeLa_A486_30min_R1 1 NDQEPPPEALDFSDDEKEK 19 1 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 1 0 NDQEPPPEALDFS(1)DDEKEK 124.51 2.85E-06 1980800000 261180 232390 80231 312820 154840 382670 668040 422000 159210 934300 TRUE FALSE FALSE 242872.6307 213974.5701 111298.5919 728260.769 135418.5234 335460.0661 500889.3262 325919.8122 173010.451 700345.1987 0.346789885 0.305527289 0.158919619 1.03985973 0.19335968 0.478992455 0.715203484 0.465370239 0.247035964 1 19.41770667 -11.37971202 2.264011735 5.001194038 0.447364931 0.305590925 0.253415949 13313964.53 1231289.384 273569040.3 0.063783161 4.17E-12 11.37971202 -4.553829107 NDREYDS(ph)GDT(ph)DEIIAMKK ddPTM_HeLa_A485_30min_R1 2 NDREYDSGDTDEIIAMKK 18 2 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 2 0 NDREY(0.001)DS(0.999)GDT(1)DEIIAMKK;NDREYDS(1)GDT(1)DEIIAMKK ; 140.55 3.76E-06 273980000 262900 200428 132543 430650 343870 276120 477390 433000 225580 571800 TRUE FALSE FALSE 321381.198 223866.3111 181576.1713 454175.319 309633.0954 290577.2162 375391.7266 326806.0711 270851.8369 429260.7832 0.748685206 0.521515871 0.422997344 1.058040559 0.721316988 0.676924675 0.874507389 0.761322916 0.630972703 1 18.71149485 -14 0.04000539 2.210417899 1.91E-08 0.215979598 0.16607453 1353.861114 4.036570876 200.9474079 60.30664094 1.00E-14 14 -2.21041788 NDS(ph)GEENVPLDLTR ddPTM_HeLa_A485_30min_R1 2 NDSGEENVPLDLTR 14 0 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 NDS(1)GEENVPLDLTR;NDS(1)GEENVPLDLTR ; 220.42 1.07E-27 1362490000 602950 530640 447060 846940 681710 425290 691110 523470 515950 1138650 TRUE FALSE FALSE 737074.1473 592693.732 612446.0977 893206.1876 613836.5588 447557.5268 543448.7027 395088.1617 619496.4324 854805.5103 0.86227117 0.693366766 0.716474204 1.044923292 0.718100844 0.523578196 0.635757136 0.462196555 0.724722086 1 19.70523668 -5.997004342 24.99891262 0.632133021 0.820248215 0.159735541 0.162384514 137.0113073 1143345.856 0.04871739 0.054951405 1.01E-06 5.997004342 0.188115193 NDS(ph)GEENVPLDLTR ddPTM_HeLa_A486_30min_R1 2 NDSGEENVPLDLTR 14 0 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 NDS(1)GEENVPLDLTR;NDS(1)GEENVPLDLTR ; 254.05 1.64E-41 2094350000 971190 1008460 625700 484600 798930 1059350 1188950 1137440 892310 1385700 TRUE FALSE FALSE 903114.5962 928545.9569 867987.7968 1128173.29 698720.7497 928658.1677 891462.1346 878469.7421 969656.1493 1038711.701 0.869456458 0.893940018 0.835638798 1.08612745 0.672680157 0.894048047 0.858238272 0.845730092 0.933518077 1 19.98636385 -8.001371053 4.132463385 0.999754547 0.870583857 0.162841827 0.094225314 0.318081336 15.38382626 0.086687074 0.022757805 9.97E-09 8.001371053 -0.129170691 NDS(ph)GEENVPLDLTREPSDNLR ddPTM_HeLa_A485_30min_R1 2 NDSGEENVPLDLTREPSDNLR 21 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 NDS(1)GEENVPLDLTREPSDNLR;NDS(1)GEENVPLDLTREPSDNLR ; 143.5 1.09E-09 470000000 122893 172195 162828 124496 210736 169687 228500 266470 113982 170738 TRUE FALSE FALSE 150230.1239 192331.7074 223064.853 131296.9012 189754.3839 178571.5489 179679.1083 201117.8147 136857.1419 128176.1588 1.172059806 1.500526378 1.740299094 1.024347293 1.480418712 1.393172885 1.401813801 1.569073505 1.067726972 1 16.96776842 -7.860021946 6.277885241 1.008710297 1.412238252 0.391120179 0.1882735 0.212068188 10.91782316 0.176332921 0.045847875 1.38E-08 7.860021946 0.403527955 NDS(ph)GEENVPLDLTREPSDNLR ddPTM_HeLa_A486_30min_R1 2 NDSGEENVPLDLTREPSDNLR 21 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 NDS(1)GEENVPLDLTREPSDNLR;NDS(1)GEENVPLDLTREPSDNLR ; 167.27 6.20E-14 492010000 69505 79153 64600 51300 117355 88625 130570 139481 64888 136051 TRUE FALSE FALSE 64633.05842 72880.62801 89614.85005 119428.9926 102635.2416 77691.34857 97900.00497 107724.2211 70512.54409 101982.9441 0.63376341 0.714635459 0.878723897 1.171068296 1.006396144 0.761807274 0.959964491 1.056296444 0.691415067 1 16.63796837 -4.766205134 3.313117242 0.951333097 0.65633452 0.411274284 0.13055933 0.225360434 5.074338949 0.035321087 0.098459114 1.71E-05 4.766205134 -0.294998578 NDS(ph)LPVLR ddPTM_HeLa_A485_30min_R1 4 NDSLPVLR 8 0 Q9GZY8-5 Q9GZY8-5 MFF Mitochondrial fission factor 1 0 NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR ;;; 137.78 0.00045576 719900000 623260 595370 413992 947270 649020 543390 987600 964710 480230 1548340 TRUE FALSE FALSE 761902.0368 664993.3425 567144.8684 999016.9615 584401.29 571841.0602 776591.192 728113.3599 576607.7561 1162367.333 0.655474406 0.572102573 0.487922236 0.859467513 0.502768164 0.491962432 0.66811168 0.62640556 0.496063284 1 20.14863463 -10.88139101 2.797518886 1.187761575 0.596752167 0.549137448 0.109928545 15180302.21 8542506.383 18775115.5 0.026797156 1.31E-11 10.88139101 -0.591009407 NDS(ph)LPVLR ddPTM_HeLa_A486_30min_R1 4 NDSLPVLR 8 0 Q9GZY8-5 Q9GZY8-5 MFF Mitochondrial fission factor 1 0 NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR ;;; 117.94 0.00086799 513690000 526350 557400 403395 304092 600460 612010 874740 874370 658760 983560 TRUE FALSE FALSE 489455.5831 513229.594 559600.3473 707941.544 525144.7077 536506.4287 655870.7999 675295.0384 715861.8472 737270.1741 0.66387547 0.696121465 0.759016663 0.960219969 0.712282588 0.727693114 0.889593561 0.915939722 0.970962711 1 19.49183387 -2.276391914 0.121614112 1.101801611 9.92E-10 0.607591593 0.077115564 51.00121985 0.579545499 0.628849073 9.225600715 0.005291857 2.276391914 -1.10180161 NDS(ph)PTQIPVSSDVCR ddPTM_HeLa_A485_30min_R1 4 NDSPTQIPVSSDVCR 15 0 Q8TC07-2;Q8TC07-3;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 0 NDS(0.999)PT(0.001)QIPVSSDVCR;NDS(1)PTQIPVSSDVCR;NDS(1)PTQIPVSSDVCR;NDS(0.998)PT(0.002)QIPVSSDVCR ;;; 358.48 1.71E-104 3906050000 1136610 1127620 1109220 1760700 1831570 1060810 1746800 1590380 1066730 2290670 TRUE FALSE FALSE 1389444.973 1259485.35 1519566.636 1856882.583 1649212.46 1116352.371 1373581.91 1200336.811 1280812.926 1719648.126 0.80798214 0.732408759 0.88364975 1.079803801 0.959040652 0.649174883 0.798757542 0.698013037 0.74481105 1 20.71368196 -6.248908148 24.96036985 0.760565003 0.89358431 0.174292211 0.121541233 1248.96212 2487749.489 0.042085185 0.041805536 5.64E-07 6.248908148 0.133019308 NDS(ph)PTQIPVSSDVCR ddPTM_HeLa_A486_30min_R1 4 NDSPTQIPVSSDVCR 15 0 Q8TC07-2;Q8TC07-3;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 0 NDS(1)PTQIPVSSDVCR;NDS(1)PTQIPVSSDVCR;NDS(0.998)PT(0.002)QIPVSSDVCR;NDS(1)PTQIPVSSDVCR ;;; 358.48 1.71E-104 5473080000 1674810 1833810 1173370 856900 1833570 1934040 2373710 2203510 1516870 2502410 TRUE FALSE FALSE 1557414.468 1688492.217 1627730.288 1994906.505 1603586.553 1695437.809 1779782.651 1701818.875 1648353.513 1875790.248 0.830271119 0.9001498 0.86775709 1.063501907 0.854885857 0.903852555 0.94881752 0.907254357 0.87875151 1 20.83906708 -9.694371499 0.011037794 1.91108184 4.27E-06 0.164392113 0.061431052 8171.124673 19.45901704 1782.651518 1588.756709 2.02E-10 9.694371499 -1.911077569 NDS(ph)WGSFDLR ddPTM_HeLa_A485_30min_R1 7 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NDS(1)WGSFDLR;NDS(0.993)WGS(0.007)FDLR;NDS(0.996)WGS(0.004)FDLR;NDS(1)WGSFDLR;NDS(0.983)WGS(0.017)FDLR;NDS(0.985)WGS(0.015)FDLR;NDS(0.994)WGS(0.006)FDLR ;;;;;; 222.81 4.91E-17 2688947000 1362178 1425131 1193460 1775324 2108475 1308278 2219191 2176911 1306329 2336194 TRUE FALSE FALSE 1665189.797 1591787.673 1634970.518 1872305.455 1898547.826 1376777.413 1745042.714 1643020.164 1568497.248 1753823.83 0.949462408 0.907609787 0.932231898 1.067556172 1.082519118 0.785014657 0.994993159 0.936821667 0.89432999 1 20.74207241 -8.94739584 15.1903795 0.99999861 0.95171656 0.032523511 0.081262372 0 0 0.080512362 0.019527116 1.13E-09 8.94739584 -0.048282051 NDS(ph)WGSFDLR ddPTM_HeLa_A486_30min_R1 6 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NDS(0.997)WGS(0.003)FDLR;NDS(1)WGSFDLR;NDS(1)WGSFDLR;NDS(1)WGSFDLR;NDS(1)WGSFDLR;NDS(0.983)WGS(0.017)FDLR ;;;;; 314.61 8.40E-54 4085610000 3096350 2707340 1785561 1480009 2760510 2845770 3767570 3708690 2217220 3789410 TRUE FALSE FALSE 2879311.855 2492800.518 2476978.038 3445535.748 2414261.095 2494687.831 2824884.137 2864302.247 2409410.415 2840517.071 1.013657648 0.877586882 0.8720166 1.212995966 0.849937189 0.878251307 0.994496448 1.008373537 0.848229514 1 21.43772214 NDSWGS(ph)FDLR ddPTM_HeLa_A485_30min_R1 1 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NDS(0.499)WGS(0.501)FDLR 184.98 1.16E-09 190860000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 NEARLISSQNNAGLEDFERKK ddPTM_HeLa_A486_30min_R1 1 NEARLISSQNNAGLEDFERKK 21 3 A0A087WVC4 A0A087WVC4 PRKACB 0 0 44.587 0.036355 5830100 10826 9804.1 6494.8 11098 10032 9820.9 18000 17173 9219.7 27666 FALSE FALSE TRUE 10067.15331 9027.18741 9009.760497 25836.70486 8773.693015 8609.29721 13496.20962 13263.08278 10018.87102 20738.25352 0.485438819 0.435291593 0.434451266 1.245847671 0.423068076 0.415140899 0.650788149 0.639546757 0.483110644 1 14.34000678 -11.16832939 2.304331649 2.014475619 0.584770175 0.219883752 0.237580508 9856645.595 2413344.3 52122631.72 0.065249355 6.79E-12 11.16832939 -1.429705444 NEDEDS(ph)PNKLYTLVTYVPVTTFK ddPTM_HeLa_A486_30min_R1 2 NEDEDSPNKLYTLVTYVPVTTFK 23 1 H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899;P62899-2 H7C2W9 RPL31 60S ribosomal protein L31 1 0 NEDEDS(1)PNKLYTLVTYVPVTTFK;NEDEDS(1)PNKLYTLVTYVPVTTFK ; 219.27 2.79E-38 658470000 354340 419130 140184 393900 366860 590490 827400 698610 374070 849200 TRUE FALSE FALSE 329502.5958 385916.6124 194466.9991 917019.1066 320844.998 517641.3475 620375.7687 539551.7535 406494.6888 636554.7926 0.517634302 0.606258278 0.30549923 1.440597286 0.504033591 0.81319213 0.974583454 0.847612428 0.638585544 1 19.27992518 -5.160528145 23.08194248 0.867104197 0.489443 0.372597026 0.243667426 23.96811754 5475.266885 0.063280797 0.10960567 6.91E-06 5.160528145 -0.377661197 NEEDEGHS(ph)NSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 NEEDEGHS(1)NS(0.005)S(0.995)PR;NEEDEGHS(1)NS(0.002)S(0.998)PR ; 242.9 1.00E-34 2084270000 1972610 1933030 1748460 2581830 2033030 1645670 2207840 1734240 1783660 3231800 TRUE FALSE FALSE 2411410.289 2159081.043 2395288.113 2722868.835 1830614.395 1731834.737 1736116.948 1308914.921 2141624.201 2426171.737 0.993915745 0.889912701 0.987270636 1.122290229 0.754527953 0.713813746 0.715578754 0.53949805 0.88271748 1 21.21025024 -5.832495478 8.831060956 0.738492778 0.989507742 0.436877242 0.125571149 0.249375363 28.28877854 0.037883706 0.043042614 1.47E-06 5.832495478 0.251014965 NEEDEGHS(ph)NSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 NEEDEGHS(1)NSS(1)PR;NEEDEGHS(1)NS(0.472)S(0.528)PR ; 273.35 3.59E-48 3297400000 4281200 4276500 2754000 1233660 3281200 4348000 4580900 4114900 4131300 5302400 TRUE FALSE FALSE 3981109.988 3937614.565 3820422.555 2872022.826 2869641.3 3811587.967 3434710.368 3178027.098 4489404.41 3974644.527 1.001626677 0.990683453 0.96119855 0.722586084 0.721986905 0.958975813 0.864155359 0.799575176 1.129510923 1 21.92239441 -9.324297053 12.70311464 0.999999999 0.896178182 0.044953035 0.123895282 0 0 0.123979256 0.030069386 4.74E-10 9.324297053 -0.103821817 NEEDEGHSNS(ph)SPR ddPTM_HeLa_A485_30min_R1 6 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 NEEDEGHS(0.001)NS(0.5)S(0.5)PR;NEEDEGHS(0.112)NS(0.444)S(0.444)PR;NEEDEGHSNS(0.5)S(0.5)PR;NEEDEGHS(0.055)NS(0.472)S(0.472)PR;NEEDEGHS(0.055)NS(0.472)S(0.472)PR;NEEDEGHSNS(0.5)S(0.5)PR ;;;;; 178.51 3.76E-17 23108320000 3895073 3846186 3354652 4748136 4023799 3498050 4568604 3802420 3618785 5956948 TRUE FALSE FALSE 4761518.551 4295963.995 4595677.374 5007514.647 3623175.443 3681202.489 3592484.433 2869870.533 4345041.956 4471990.493 1.064742548 0.960637998 1.027658127 1.119750736 0.810193011 0.823168675 0.803330069 0.641743433 0.971612521 1 22.09248569 -5.773676922 24.99926248 0.820919222 1.036190308 0.48413881 0.100444215 174.5788901 356634.4459 0.030074088 0.034345494 1.68E-06 5.773676922 0.215271087 NEEDEGHSNS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 NEEDEGHS(0.006)NS(0.497)S(0.497)PR 137.45 5.56E-06 487170000 134840 108520 87441 40046 105470 143460 145100 124810 132270 161720 TRUE FALSE FALSE 125388.4123 99920.47998 121300.497 93229.11181 92240.96913 125761.3638 108794.4453 96393.48758 143735.2701 121224.2594 1.034350822 0.824261418 1.000628897 0.769063159 0.760911798 1.037427363 0.897464302 0.795166645 1.185697243 1 16.88731891 -7.761479689 25 1.092848631 0.88825267 0.360735144 0.108043774 1.122014337 691553.2198 0.08288557 0.026633121 1.73E-08 7.761479689 -0.204595961 NEEDEGHSNSS(ph)PR ddPTM_HeLa_A485_30min_R1 3 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 NEEDEGHSNS(0.188)S(0.812)PR;NEEDEGHSNS(0.007)S(0.993)PR;NEEDEGHSNS(0.041)S(0.959)PR ;; 242.1 5.22E-35 92550147000 7782315 8214753 7076036 10493239 8973933 7068575 9479447 7626489 7561809 13493730 TRUE FALSE FALSE 9513464.123 9175396.904 9693756.175 11066458.08 8080456.721 7438674.657 7454085.708 5756080.615 9079394.705 10129991.44 0.939138416 0.905765514 0.956936265 1.092444958 0.797676559 0.734321909 0.735843238 0.568221666 0.896288487 1 23.27212962 -5.910556428 7.179645885 0.75778281 0.966875904 0.364479558 0.116308388 0.215379101 14.70612487 0.035132169 0.039918437 1.23E-06 5.910556428 0.209093094 NEEDEGHSNSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 NEEDEGHSNS(0.305)S(0.695)PR 192.16 9.73E-18 914800000 427970 328370 238460 113160 291630 427380 442160 362700 390440 471750 TRUE FALSE FALSE 397971.513 302348.7653 330798.0982 263442.1988 255051.0461 374654.2009 331526.8913 280121.1277 424283.6536 353620.7294 1.125419072 0.855008601 0.935460143 0.744985169 0.721255924 1.059480312 0.937521089 0.79215132 1.199826872 1 18.43184332 -7.761470679 25 1.09991344 0.892251871 0.281769433 0.129826156 1.063511814 842501.5583 0.10257734 0.032976094 1.73E-08 7.761470679 -0.207661569 NEEDEGHSNSS(ph)PRHS(ph)EAATAQR ddPTM_HeLa_A485_30min_R1 2 NEEDEGHSNSSPRHSEAATAQR 22 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 NEEDEGHSNS(0.007)S(0.993)PRHS(1)EAATAQR;NEEDEGHSNS(0.244)S(0.755)PRHS(1)EAATAQR ; 204.35 1.69E-26 1365650000 592690 586620 515920 655940 696290 522620 763130 554250 553110 891180 TRUE FALSE FALSE 724531.8457 655220.1061 706780.2772 691772.3413 626964.9228 549983.5751 600081.0413 418319.3185 664114.1036 669025.227 1.082966406 0.979365321 1.056432925 1.034000384 0.937131961 0.822067021 0.896948302 0.625266883 0.992659285 1 19.35170109 -5.972595397 2.757009282 0.845897088 1.036122149 0.375608335 0.101657633 0.256623611 3.965735079 0.033126508 0.036667311 1.07E-06 5.972595397 0.190225061 NEEDEGHSNSS(ph)PRHS(ph)EAATAQR ddPTM_HeLa_A486_30min_R1 4 NEEDEGHSNSSPRHSEAATAQR 22 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 2 0 NEEDEGHSNS(0.435)S(0.565)PRHS(1)EAATAQR;NEEDEGHSNS(0.486)S(0.514)PRHS(1)EAATAQR;NEEDEGHS(0.002)NS(0.451)S(0.547)PRHS(0.989)EAAT(0.011)AQR;NEEDEGHSNS(0.178)S(0.822)PRHS(0.965)EAAT(0.035)AQR ;;; 208.82 1.01E-26 1894470000 1235310 1421940 972070 328422 1140390 1442840 1625800 1378890 1317620 1458320 TRUE FALSE FALSE 1148721.148 1309260.296 1348481.537 764583.0135 997351.6525 1264837.071 1219007.644 1064946.848 1431832.362 1093147.18 1.050838505 1.197698096 1.233577291 0.699432819 0.912367219 1.157060178 1.115135881 0.974202621 1.309825784 1 20.06005623 -9.067262162 14.65736062 0.999970902 1.065879097 0.015119167 0.167996639 0 0 0.168539601 0.040876857 8.57E-10 9.067262162 0.065908195 NEEPS(ph)EEEIDAPKPK ddPTM_HeLa_A485_30min_R1 7 NEEPSEEEIDAPKPK 15 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK ;;;;;; 193.8 3.61E-18 9077830000 5616620 3396410 1934970 9457880 5713190 4419310 9238030 8738200 3545970 14584700 TRUE FALSE FALSE 6866017.742 3793590.605 2650795.924 9974540.036 5144364.743 4650698.238 7264249.423 6595142.749 4257613.653 10949002.7 0.627090698 0.346478187 0.24210387 0.91099987 0.469847792 0.424759986 0.6634622 0.602351002 0.388858581 1 23.38429613 -11.36029323 2.24308998 4.085051287 0.520231159 0.387887521 0.1810621 7970619.091 1048387.267 124392498.4 0.045254166 4.36E-12 11.36029323 -3.564820127 NEEPS(ph)EEEIDAPKPK ddPTM_HeLa_A486_30min_R1 7 NEEPSEEEIDAPKPK 15 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK ;;;;;; 203.99 2.82E-24 17620870000 8148040 6423970 2334060 4805590 5372920 9030890 13476150 10745540 5934200 14720750 TRUE FALSE FALSE 7576904.473 5914911.222 3237870.54 11187656.38 4698998.273 7916750.611 10104274.73 8299015.115 6448581.234 11034578.38 0.686651017 0.536034184 0.293429475 1.013872573 0.425843028 0.717449307 0.915691962 0.752091727 0.58439761 1 23.39552817 -14 0.059443889 2.280567435 0.114611817 0.239445376 0.198560793 580.1123132 2.515457144 108.3039378 18.3132223 1.00E-14 14 -2.165955618 NEEPVRS(ph)PER ddPTM_HeLa_A485_30min_R1 2 NEEPVRSPER 10 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 NEEPVRS(1)PER;NEEPVRS(1)PER ; 101.3 0.00072755 1453020000 671070 698480 631830 856470 845350 593550 894700 619130 618110 1076730 TRUE FALSE FALSE 820347.2063 780161.16 865570.2096 903256.7874 761183.9858 624627.3602 703540.036 467287.3967 742159.0074 808321.0267 1.014877974 0.965162521 1.07082481 1.11744809 0.941685247 0.772746643 0.870372058 0.578096302 0.918148833 1 19.62456885 -6.06064677 3.974401671 0.805446347 1.038721092 0.449440995 0.110168383 0.190580703 5.998733713 0.03594242 0.037156945 8.70E-07 6.06064677 0.233274745 NEEPVRS(ph)PER ddPTM_HeLa_A486_30min_R1 3 NEEPVRSPER 10 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 NEEPVRS(1)PER;NEEPVRS(1)PER;NEEPVRS(1)PER ;; 133.13 4.16E-05 906670000 2248310 2436330 1630760 1000470 2000580 2269190 2680090 2357630 2107740 3034220 TRUE FALSE FALSE 2090715.079 2243266.338 2262233.945 2329144.721 1749648.602 1989240.409 2009503.135 1820849.116 2290440.6 2274431.563 0.919225319 0.986297576 0.99463707 1.024055751 0.76926852 0.874609921 0.88351884 0.800573271 1.007038698 1 21.11707459 -5.734778106 24.9998764 0.878186406 0.982398709 0.261150893 0.074337615 265.4820282 248937.3405 0.02105657 0.027176107 1.84E-06 5.734778106 0.104212303 NEEPVRS(ph)PERR ddPTM_HeLa_A485_30min_R1 9 NEEPVRSPERR 11 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR ;;;;;;;; 136.57 8.69E-06 39669486000 6918988 8506550 7683039 8418457 11427000 7565046 11569978 10274617 6973418 11338434 TRUE FALSE FALSE 8458093.01 9501317.025 10525314.84 8878335.989 10289287.76 7961140.111 9097957.682 7754751.071 8372919.029 8511971.072 0.993670319 1.116229948 1.236530852 1.043041137 1.208802012 0.935287496 1.068842646 0.911040581 0.983663943 1 23.02106182 -6.27221394 24.97389593 0.979774199 1.121701376 0.455554573 0.076447655 657.8509253 1524800.452 0.026197358 0.023318192 5.34E-07 6.27221394 0.141927177 NEEPVRS(ph)PERR ddPTM_HeLa_A486_30min_R1 9 NEEPVRSPERR 11 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR;NEEPVRS(1)PERR ;;;;;;;; 83.633 0.003421 64548215000 8022838 7813552 5731091 3615172 8663814 7829257 10181335 9693031 6847064 10224133 TRUE FALSE FALSE 7460478.486 7194377.683 7950322.919 8416303.117 7577117.661 6863362.873 7633857.296 7486139.439 7440573.021 7663943.549 0.973451649 0.938730516 1.037367103 1.098168725 0.98867086 0.89553933 0.996074312 0.976799919 0.970854361 1 22.8696555 -5.999408603 24.99997042 0.965271563 1.012880694 0.162241693 0.047019208 38.65618748 1633950.608 0.01583632 0.017803935 1.00E-06 5.999408603 0.047609131 NEGNLENEGKPEDEVEPDDEGKS(ph)DEEEKPDVEGK ddPTM_HeLa_A485_30min_R1 3 NEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGK 34 3 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 0 NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK;NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK;NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK ;; 359.34 9.65E-149 2974080000 776560 291953 171615 3764670 468942 433643 1309317 609917 210210 4634950 TRUE FALSE FALSE 949303.0929 326094.3637 235102.53 3970324.389 422252.4879 456347.8769 1029570.727 460333.8994 252397.2188 3479542.265 0.27282413 0.093717604 0.067567086 1.141047899 0.121352884 0.131151698 0.295892577 0.132297258 0.072537478 1 21.7304661 -10.66105657 2.839200699 1.080181855 0.263770377 0.347093109 0.304937537 111607426.2 105218640.1 65168801.13 0.078907642 2.18E-11 10.66105657 -0.816411478 NEGNLENEGKPEDEVEPDDEGKS(ph)DEEEKPDVEGK ddPTM_HeLa_A486_30min_R1 1 NEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGK 34 3 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 0 NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK 239.38 5.12E-50 730080000 151010 135230 20432 531110 56629 255490 500020 369240 91051 1292800 TRUE FALSE FALSE 140424.9788 124513.8823 28343.81759 1236450.921 49526.06278 223970.2414 374909.7073 285172.1125 98943.37399 969074.4653 0.144906283 0.128487425 0.029248338 1.275909092 0.05110656 0.231117679 0.386873992 0.294272652 0.102100899 1 19.886248 -10.46332626 2.832170105 1.021009569 0.303796599 0.272962577 0.345422511 31831288.58 35218675.98 5279710.469 0.088109424 3.44E-11 10.46332626 -0.71721297 NEGRPET(ph)PK ddPTM_HeLa_A485_30min_R1 3 NEGRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 NEGRPET(1)PK;NEGRPET(1)PK;NEGRPET(1)PK ;; 103.88 0.0015358 3216120000 765280 722620 551808 1647970 1119670 717760 1396520 1122240 621340 2079480 TRUE FALSE FALSE 935513.8958 807124.123 755944.7418 1737994.428 1008191.723 755340.8037 1098142.093 847008.8804 746037.2387 1561103.906 0.599264336 0.517021397 0.484237301 1.113311178 0.645819743 0.483850435 0.703439463 0.54257047 0.477890828 1 20.57413513 -11.06997365 2.679733108 1.580096403 0.623307807 0.286615898 0.180377283 58624019.83 26990168.12 207349135.1 0.047461172 8.51E-12 11.06997365 -0.956788596 NEGRPET(ph)PK ddPTM_HeLa_A486_30min_R1 5 NEGRPETPK 9 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 NEGRPET(1)PK;NEGRPET(1)PK;NEGRPET(1)PK;NEGRPET(1)PK;NEGRPET(1)PK ;;;; 82.85 0.0074557 3263250000 1493381 1301474 774910 1176186 1255563 1530151 2250016 1926575 1215708 2746927 TRUE FALSE FALSE 1388702.704 1198340.46 1074975.905 2738220.449 1098078.581 1341376.527 1687038.199 1487935.929 1321086.548 2059078.6 0.674429186 0.581978979 0.522066474 1.329828035 0.533286384 0.651445033 0.819317047 0.722622211 0.641591122 1 20.97356747 -11.54893693 2.103962259 4.955370135 0.723242286 0.126465514 0.220882728 7079968.632 507478.0001 133355915 0.054867156 2.83E-12 11.54893693 -4.232127849 NEGS(ph)ES(ph)APEGQAQQR ddPTM_HeLa_A485_30min_R1 2 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NEGS(1)ES(1)APEGQAQQR;NEGS(1)ES(1)APEGQAQQR ; 309.67 1.18E-84 343520000 1160590 1255160 838230 1253660 952360 924650 1222530 1079850 745340 1352200 TRUE FALSE FALSE 1418759.242 1401940.044 1148326.159 1322144.271 857539.6945 973063.2442 961326.4783 815015.0944 894922.9013 1015121.425 1.397625157 1.381056501 1.131220492 1.30244938 0.844765634 0.958568325 0.947006392 0.802874488 0.881591974 1 19.95322088 -5.447608247 0.999631258 0.885283902 1.397321951 0.7784682 0.100024582 0.257866521 0.513671199 0.040084685 0.092685404 3.57E-06 5.447608247 0.512038049 NEGS(ph)ES(ph)APEGQAQQR ddPTM_HeLa_A486_30min_R1 2 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NEGS(1)ES(1)APEGQAQQR;NEGS(1)ES(1)APEGQAQQR ; 239.8 7.70E-41 630440000 1381270 1321520 632040 397400 791450 1137370 1211290 1045200 1069090 1737070 TRUE FALSE FALSE 1284450.106 1216797.942 876782.8146 925167.2835 692178.961 997052.8533 908212.4303 807230.7766 1161759.582 1302096.366 0.986447808 0.934491467 0.673362462 0.710521362 0.531588122 0.765728927 0.697500165 0.619947031 0.892222429 1 20.31240479 -4.700410253 5.529479291 0.714246176 0.969832498 0.323169352 0.126920175 0.189588143 11.28132744 0.030690017 0.082957945 1.99E-05 4.700410253 0.255586322 NEGS(ph)ESAPEGQAQQR ddPTM_HeLa_A485_30min_R1 2 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NEGS(0.998)ES(0.002)APEGQAQQR;NEGS(0.997)ES(0.003)APEGQAQQR ; 391.86 1.88E-134 3774700000 1435255 1562076 926218 1476366 1121949 1157573 1461017 1150417 869199 1662354 TRUE FALSE FALSE 1754522.523 1744747.2 1268864.581 1557016.136 1010243.818 1218181.732 1148858.783 868275.427 1043639.267 1247959.741 1.405912759 1.398079716 1.016751214 1.247649331 0.809516353 0.976138646 0.920589619 0.695755959 0.836276389 1 20.25113996 -4.912645604 0.649375025 0.837387014 1.579949307 0.708460745 0.125235297 0.85382096 0.468990783 0.063416265 0.42066068 1.22E-05 4.912645604 0.742562293 NEGS(ph)ESAPEGQAQQR ddPTM_HeLa_A486_30min_R1 1 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NEGS(0.999)ES(0.001)APEGQAQQR 79.022 0.0022488 0 20591 20898 11423 5380.7 14386 19489 18691 15430 15683 26364 TRUE FALSE FALSE 19147.67723 19241.96637 15846.29152 12526.54153 12581.57374 17084.64533 14014.31411 11916.92583 17042.41507 19762.2828 0.968900072 0.973671239 0.801845196 0.63386106 0.636645769 0.864507684 0.709144498 0.603013627 0.862370772 1 14.27046199 -4.845998298 3.908763369 0.73800162 0.973912639 0.322203821 0.1186779 0.212935422 6.148328853 0.030398055 0.071909687 1.43E-05 4.845998298 0.235911019 NEGSES(ph)APEGQAQQR ddPTM_HeLa_A485_30min_R1 5 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NEGSES(1)APEGQAQQR;NEGSES(1)APEGQAQQR;NEGS(0.018)ES(0.982)APEGQAQQR;NEGSES(1)APEGQAQQR;NEGSES(1)APEGQAQQR ;;;; 367.31 2.32E-118 6632502000 2337201 2721923 1772214 2654458 2035907 1964418 2534969 2149561 1702105 2991265 TRUE FALSE FALSE 2857103.299 3040228.217 2427829.707 2799464.319 1833204.951 2067271.889 1993352.164 1622377.794 2043701.861 2245597.686 1.272313076 1.353861485 1.081150788 1.246645531 0.816355023 0.920588715 0.887671098 0.722470372 0.910092611 1 21.09866805 -5.757899289 24.99916893 0.865113162 1.235494706 0.785445071 0.092650443 40.32669242 284773.8865 0.027843727 0.034515819 1.75E-06 5.757899289 0.370381545 NEGSES(ph)APEGQAQQR ddPTM_HeLa_A486_30min_R1 5 NEGSESAPEGQAQQR 15 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NEGSES(1)APEGQAQQR;NEGSES(1)APEGQAQQR;NEGS(0.001)ES(0.999)APEGQAQQR;NEGSES(1)APEGQAQQR;NEGSES(1)APEGQAQQR ;;;; 338.8 2.95E-120 6558200000 2795140 2699495 1456176 874105.7 1736251 2327363 2739828 2207058 2277260 3477634 TRUE FALSE FALSE 2599215.12 2485577.185 2020046.345 2034962.244 1518474.21 2040236.616 2054294.055 1704559.073 2474654.73 2606811.811 0.997085831 0.953493142 0.774910692 0.780632586 0.582502428 0.782655889 0.788048469 0.653886508 0.949303176 1 21.31385501 -1.481331908 11.39126747 0.808431399 1.012335073 0 0.138232075 0 0 0.032313913 0 0.033011715 1.481331908 0.203903674 NEIVTET(ph)SPFAPAFLQPDDKK ddPTM_HeLa_A485_30min_R1 1 NEIVTETSPFAPAFLQPDDKK 21 1 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 NEIVTET(0.571)S(0.429)PFAPAFLQPDDKK 109.68 7.71E-05 54560000 77974 47461 40149 142380 105790 66393 124560 113730 45983 177510 TRUE FALSE FALSE 95319.04729 53011.15109 55001.78584 150157.8589 95257.17615 69869.23482 97946.73844 85837.53918 55211.36632 133260.0238 0.715286134 0.397802353 0.412740327 1.126803482 0.714821845 0.524307537 0.735004659 0.644135703 0.414313046 1 17.02388453 -11.23453118 2.433050972 2.356189066 0.635625335 0.22036882 0.207709142 7749995.441 1908053.578 57852130.45 0.055300205 5.83E-12 11.23453118 -1.720563731 NELDS(ph)PHEEKQDKENHTESTVNSLPH ddPTM_HeLa_A485_30min_R1 1 NELDSPHEEKQDKENHTESTVNSLPH 26 2 Q8TBZ6 Q8TBZ6 TRMT10A tRNA methyltransferase 10 homolog A 1 0 NELDS(1)PHEEKQDKENHTESTVNSLPH 107.04 0.00020195 716160000 939020 775400 440250 1229500 970680 834080 1603700 1482400 669000 1870100 TRUE FALSE FALSE 1147901.759 866076.2849 603116.7953 1296664.472 874035.6909 877751.1391 1261056.394 1118839.076 803262.1636 1403918.487 0.817641316 0.616899267 0.429595308 0.923603816 0.622568688 0.625215173 0.898240465 0.796940197 0.572157266 1 20.42102774 -14 0.205616612 2.383481847 0.656378671 0.255094938 0.149817879 201.5135628 2.00314793 114.9408956 0.338509945 1.00E-14 14 -1.727103176 NENPVDYTVQIPPS(ph)T(ph)TYAITPMKRPMEEDGEEKSPSK ddPTM_HeLa_A485_30min_R1 1 NENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 37 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 2 0 NENPVDYTVQIPPS(0.318)T(0.322)T(0.318)Y(0.347)AIT(0.303)PMKRPMEEDGEEKS(0.307)PS(0.085)K 61.565 0.0036328 208990000 32369 16955 6129.7 90028 29635 30079 76951 47039 19683 125980 TRUE FALSE FALSE 39569.37238 18937.73976 8397.331108 94946.00168 26684.43535 31653.88993 60509.79022 35502.6115 23633.19756 94575.50449 0.418389229 0.200239373 0.088789705 1.003917475 0.282149543 0.334694381 0.639804044 0.375389079 0.24988709 1 16.52917895 -10.64155472 2.729613298 1.062654581 0.403081273 0.350845414 0.245099318 57502745.96 52760309.7 25401056.14 0.062345875 2.28E-11 10.64155472 -0.659573307 NENPVDYTVQIPPS(ph)TTYAITPMKRPMEEDGEEKS(ph)PSK ddPTM_HeLa_A485_30min_R1 1 NENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 37 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 2 0 NENPVDYTVQIPPS(0.216)T(0.216)T(0.216)Y(0.199)AIT(0.215)PMKRPMEEDGEEKS(0.907)PS(0.031)K 82.765 0.00013011 157790000 135650 57580 30997 392940 130530 106290 295360 187720 70770 532670 TRUE FALSE FALSE 165824.8745 64313.48012 42464.08019 414405.3172 117533.9749 111855.18 232253.9231 141681.3757 84972.88986 399885.1721 0.414681229 0.16082987 0.106190685 1.036310787 0.293919313 0.279718249 0.580801538 0.354305149 0.212493225 1 18.60922626 -10.99907734 2.97635439 1.60991914 0.386171345 0.348662099 0.253291376 125865701.3 25971654.83 526140218.1 0.065271021 1.00E-11 10.99907734 -1.223747795 NENPVDYTVQIPPS(ph)TTYAITPMKRPMEEDGEEKS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 NENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 37 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 2 0 NENPVDYTVQIPPS(0.221)T(0.221)T(0.221)Y(0.2)AIT(0.221)PMKRPMEEDGEEKS(0.742)PS(0.176)K 87.368 3.50E-05 204950000 108460 68344 21051 143820 52107 135050 250250 179460 64191 342690 TRUE FALSE FALSE 100857.5141 62928.17254 29202.51097 334820.2283 45571.25418 118388.9041 187634.8031 138600.8756 69755.12756 256878.1935 0.392627777 0.244972809 0.113682328 1.303420208 0.177404137 0.460875649 0.730442707 0.539558745 0.271549432 1 17.9707249 -14 0.225713071 3.62944477 0.420174796 0.181530678 0.329716784 287.710672 2.88113622 346.7941288 0.601036733 1.00E-14 14 -3.209269974 NENPVDYTVQIPPSTTYAIT(ph)PMKRPMEEDGEEKS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 NENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSK 37 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 2 0 NENPVDYTVQIPPS(0.066)T(0.072)T(0.077)Y(0.35)AIT(0.47)PMKRPMEEDGEEKS(0.821)PS(0.144)K 116.86 1.14E-05 168500000 153190 90644 20749 191120 67666 178530 325600 254120 85147 468420 TRUE FALSE FALSE 142452.1721 83461.03932 28783.56848 444937.0187 59178.69932 156504.7838 244131.4362 196262.4234 92527.61052 351124.5831 0.405702645 0.237696371 0.081975372 1.267177065 0.168540462 0.44572437 0.695284375 0.55895381 0.263517894 1 18.42162348 -14 0.20999216 3.463669997 0.392983459 0.195064958 0.323457987 253.4701602 2.526818864 264.5843553 0.693955155 1.00E-14 14 -3.070686538 NENS(ph)PDTQR ddPTM_HeLa_A485_30min_R1 1 NENSPDTQR 9 0 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 NENS(0.995)PDT(0.005)QR 95.498 0.0020835 0 52256 60004 44832 112480 54133 62888 67236 88823 55865 141220 TRUE FALSE FALSE 63880.16692 67020.94583 61417.22242 118624.4976 48743.32845 66180.71844 52870.47933 67039.01998 67076.59308 106016.453 0.602549558 0.63217495 0.579317839 1.118925358 0.459771357 0.624249506 0.4987007 0.632345434 0.632699842 1 16.69392865 -10.18320608 3.269409852 1.000755735 0.643755551 0.286096038 0.169497672 29485677.73 44073352.89 231938.7962 0.042709143 6.56E-11 10.18320608 -0.357000184 NENTEGS(ph)PQEDGVELEGLK ddPTM_HeLa_A485_30min_R1 2 NENTEGSPQEDGVELEGLK 19 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 NENTEGS(1)PQEDGVELEGLK;NENTEGS(1)PQEDGVELEGLK ; 272.84 2.36E-69 504990000 422760 237990 193930 712680 478480 258800 469350 412560 316330 963330 TRUE FALSE FALSE 516801.5035 265820.8603 265672.7771 751611.9038 430840.8512 272350.3678 369069.5383 311379.0131 379814.5294 723189.5598 0.714614165 0.367567336 0.367362573 1.039301375 0.595750928 0.3765961 0.510335822 0.430563479 0.525193601 1 19.46401433 -10.60229482 2.833006453 1.034110966 0.543215697 0.325323949 0.195415851 71770014.74 72241729.45 18230497.68 0.053784272 2.50E-11 10.60229482 -0.490895268 NENTEGS(ph)PQEDGVELEGLK ddPTM_HeLa_A486_30min_R1 2 NENTEGSPQEDGVELEGLK 19 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 NENTEGS(1)PQEDGVELEGLK;NENTEGS(1)PQEDGVELEGLK ; 269.08 6.87E-59 355540000 366450 433510 185152 190558 305830 474740 597740 510470 355770 586910 TRUE FALSE FALSE 340763.7473 399157.0888 256847.8129 443628.6543 267469.9496 416171.4056 448179.1298 394247.1245 386608.4301 439943.9159 0.774561791 0.907290849 0.583819445 1.008375473 0.607963743 0.94596468 1.018718781 0.896130416 0.878767534 1 18.74696009 -6.417083985 24.71222546 0.945898062 0.784970338 0.32492843 0.123282978 35.35056417 8240.099151 0.040692405 0.035887318 3.83E-07 6.417083985 -0.160927724 NES(ph)SPAPPDSDADKLK ddPTM_HeLa_A486_30min_R1 1 NESSPAPPDSDADKLK 16 1 J3KTD7;Q8ND04;Q8ND04-2 J3KTD7 SMG8 Protein SMG8 1 0 NES(0.5)S(0.5)PAPPDSDADKLK 84.499 0.00043809 0 119430 129470 93196 62568 198870 157150 180170 188050 106480 193110 TRUE FALSE FALSE 111058.5737 119210.3257 129283.9871 145661.466 173925.8702 137762.4308 135089.5604 145235.1201 115709.7721 144753.9991 0.767222836 0.823537356 0.893128949 1.006269029 1.201527221 0.951700345 0.933235429 1.003323715 0.79935458 1 17.14324368 -4.912959956 2.430345377 0.98959026 0.786159538 0.398370765 0.093699805 0.304867399 3.582862709 0.027662335 0.074264971 1.22E-05 4.912959956 -0.203430722 NES(ph)SPIRFDILLDDLDTVPVSTLQR ddPTM_HeLa_A485_30min_R1 1 NESSPIRFDILLDDLDTVPVSTLQR 25 1 F5H1U6;A0A0A0MTP3;Q99550-2;Q99550 F5H1U6 MPHOSPH9 M-phase phosphoprotein 9 1 0 NES(0.5)S(0.5)PIRFDILLDDLDTVPVSTLQR 67.69 0.0054363 17837000 17267 22190 22599 20559 26295 19435 27019 28285 18880 31370 TRUE FALSE FALSE 21107.98458 24784.92747 30959.31052 21682.08611 23676.97747 20452.58655 21246.16993 21348.0594 22669.04282 23550.03632 0.896303695 1.052436911 1.314618377 0.920681642 1.005390274 0.868473673 0.902171429 0.906497939 0.962590567 1 14.52344166 NES(ph)SPIRFDILLDDLDTVPVSTLQR ddPTM_HeLa_A486_30min_R1 1 NESSPIRFDILLDDLDTVPVSTLQR 25 1 F5H1U6;A0A0A0MTP3;Q99550-2;Q99550 F5H1U6 MPHOSPH9 M-phase phosphoprotein 9 1 0 NES(0.5)S(0.5)PIRFDILLDDLDTVPVSTLQR 78.45 0.0034318 13212000 12311 14141 10328 5720.5 16604 14552 18426 17185 14136 16832 TRUE FALSE FALSE 11448.06247 13020.41566 14327.27819 13317.6131 14521.37149 12756.72219 13815.61991 13272.35065 15361.31986 12617.15764 0.907340845 1.031961083 1.135539287 1.055516106 1.15092257 1.011061489 1.094986708 1.051928732 1.217494486 1 13.62309932 -4.351374297 3.003138789 1.089849009 0.894283257 0.436093874 0.062760907 0.269938255 3.831594225 0.015015011 0.111633756 4.45E-05 4.351374297 -0.195565752 NESEDNKFS(ph)DDS(ph)DDDFVQPR ddPTM_HeLa_A485_30min_R1 2 NESEDNKFSDDSDDDFVQPR 20 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 2 0 NESEDNKFS(1)DDS(1)DDDFVQPR;NESEDNKFS(1)DDS(1)DDDFVQPR ; 196.41 2.45E-20 1458630000 1403380 1136880 766880 2937900 1837770 1309480 2669100 2133300 1063420 3653000 TRUE FALSE FALSE 1715557.039 1269828.226 1050580.825 3098390.038 1654795.166 1378042.348 2098824.98 1610104.83 1276838.64 2742374.328 0.625573621 0.463039715 0.383091693 1.129820246 0.603416955 0.502499726 0.765331326 0.587120735 0.465596044 1 21.38699408 -11.1834674 2.324346572 2.020066707 0.61796443 0.25061786 0.200162273 39650878.58 7816078.607 213097978.4 0.050648633 6.55E-12 11.1834674 -1.402102277 NESEDNKFS(ph)DDS(ph)DDDFVQPR ddPTM_HeLa_A486_30min_R1 4 NESEDNKFSDDSDDDFVQPR 20 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 2 0 NESEDNKFS(1)DDS(1)DDDFVQPR;NESEDNKFS(1)DDS(1)DDDFVQPR;NESEDNKFS(1)DDS(1)DDDFVQPR;NESEDNKFS(1)DDS(1)DDDFVQPR ;;; 287.05 4.19E-73 1425584000 2529080 2058553 892635 1967236 1779140 2646790 3995700 3404350 1720196 5253700 TRUE FALSE FALSE 2351804.552 1895425.763 1238287.178 4579824.827 1555983.671 2320255.96 2995933.598 2629253.821 1869303.974 3938139.324 0.597186732 0.481299824 0.314434578 1.16294129 0.395106304 0.589175692 0.760748504 0.667638599 0.474666796 1 21.90908272 -14 0.349151635 5.447637778 0.596863994 0.21429369 0.224441109 697.3036867 5.749572371 2321.592013 0.172152197 1.00E-14 14 -4.850773784 NEVVT(ph)PEKVCK ddPTM_HeLa_A486_30min_R1 1 NEVVTPEKVCK 11 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 NEVVT(1)PEKVCK 63.894 0.010209 0 242750 180140 74147 162740 219440 249100 409560 368150 145440 421020 TRUE FALSE FALSE 225734.4786 165865.0503 102858.7041 378866.9444 191915.789 218368.5747 307083.7561 284330.2817 158046.8563 315593.8516 0.715268936 0.525564898 0.325921128 1.200488991 0.608110038 0.691929116 0.97303466 0.900937329 0.500791937 1 18.26770957 -5.237819727 24.99626643 0.824995368 0.522583011 0.320302417 0.210943462 990.4636354 1048189.116 0.056118664 0.097126822 5.78E-06 5.237819727 -0.302412357 NFAAFFSHILSLASPSHPK ddPTM_HeLa_A486_30min_R1 1 NFAAFFSHILSLASPSHPK 19 0 F5H619;Q86XA9-2;Q86XA9 F5H619 HEATR5A HEAT repeat-containing protein 5A 0 0 46.249 0.036646 1305000 2043 1723.2 1072.5 1232.9 1532.1 2187.4 2461.9 2217 1898.7 1681.9 FALSE FALSE TRUE 1899.79625 1586.647356 1487.800723 2870.253507 1339.929732 1917.540828 1845.906581 1712.237497 2063.280845 1260.741293 1.506888258 1.258503521 1.180099939 2.276639564 1.062811014 1.520962976 1.464143827 1.358119629 1.636561646 1 10.30005655 -9.914482277 5.133321247 0.999998747 1.468102106 0.169364972 0.314588552 4.34E-06 9.18E-07 0.293136143 0.071095767 1.22E-10 9.914482277 0.468103359 NFAIGYYLK ddPTM_HeLa_A486_30min_R1 2 NFAIGYYLK 9 0 O94925-3;O94925 O94925-3 GLS "Glutaminase kidney isoform, mitochondrial" 0 0 ; ; 127.56 0.0027567 29119000 37194 55013 40154 35958 66660 67465 82421 73840 55966 70685 FALSE FALSE TRUE 34586.89267 50653.56953 55702.70416 83712.04122 58298.88122 59141.85423 61798.39404 57028.24392 60817.17794 52985.01592 0.65276743 0.955998005 1.051291638 1.579919148 1.100289963 1.116199612 1.16633718 1.076308895 1.147818433 1 15.6932968 -4.451889358 2.043697115 1.17138413 0.612727299 0.521798212 0.14969743 0.384545892 2.36092149 0.041513648 0.345068598 3.53E-05 4.451889358 -0.558656831 NFAWKEEYDT(ph)RQAS(ph)NRWEK ddPTM_HeLa_A486_30min_R1 1 NFAWKEEYDTRQASNRWEK 19 3 A0A2R8Y534;A0A2R8Y4Q0;Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y4N5 A0A2R8Y534 DNAJC21 DnaJ homolog subfamily C member 21 2 0 NFAWKEEY(0.255)DT(0.873)RQAS(0.873)NRWEK 42.325 0.029793 987060000 655560 914450 571980 0 633650 432920 194540 359280 648070 55611 TRUE FALSE FALSE 609608.6293 841985.6516 793465.9742 0 554171.7084 379510.732 145864.0344 277479.787 704245.2294 41685.64363 14.62394667 20.19845631 19.03451416 0 13.29406626 9.104111126 3.49914315 6.656483212 16.89419109 1 15.34726299 -5.234921929 24.87203234 7.62074094 18.17692328 0.483428082 5.075991402 603.6850632 566225.3498 1.335432462 2.312143148 5.82E-06 5.234921929 10.55618234 NFDFEGSLS(ph)PVIAPK ddPTM_HeLa_A485_30min_R1 5 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 NFDFEGS(0.013)LS(0.987)PVIAPK;NFDFEGS(0.007)LS(0.993)PVIAPK;NFDFEGS(0.099)LS(0.901)PVIAPK;NFDFEGS(0.003)LS(0.997)PVIAPK;NFDFEGSLS(1)PVIAPK ;;;; 285.11 9.98E-59 1761320000 558409 543927 424428 757203 761218 520699 922730 837547 432991 1022698 TRUE FALSE FALSE 682625.1556 607534.5311 581441.5791 798567.0826 685428.4631 547961.9945 725581.1975 632137.285 519888.3221 767758.21 0.889114759 0.791309716 0.757323818 1.040128353 0.892766048 0.71371688 0.94506472 0.823354641 0.677151107 1 19.55029251 -9.069431941 14.38924236 1.000002778 0.83980748 0.181031476 0.104031522 0 0 0.10122851 0.02455152 8.52E-10 9.069431941 -0.160195298 NFDFEGSLS(ph)PVIAPK ddPTM_HeLa_A486_30min_R1 6 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 NFDFEGSLS(1)PVIAPK;NFDFEGS(0.082)LS(0.918)PVIAPK;NFDFEGS(0.46)LS(0.54)PVIAPK;NFDFEGS(0.097)LS(0.903)PVIAPK;NFDFEGS(0.087)LS(0.913)PVIAPK;NFDFEGS(0.083)LS(0.917)PVIAPK ;;;;; 213.94 2.75E-26 2125031000 2107508 1824737 1007174 881921 1715245 2025197 2600170 2438408 1594388 2606231 TRUE FALSE FALSE 1959782.572 1680138.195 1397178.746 2053156.658 1500102.978 1775348.785 1949579.964 1883235.728 1732590.836 1953613.794 1.003157624 0.860015526 0.715176536 1.050953195 0.767860558 0.908751152 0.997935196 0.963975446 0.886864559 1 20.89771386 -6.530462376 21.54444766 0.958356395 0.874712395 0.139578511 0.096481774 67.86519931 192786.3061 0.035806292 0.027834912 2.95E-07 6.530462376 -0.083644 NFEES(ph)PERK ddPTM_HeLa_A485_30min_R1 2 NFEESPERK 9 1 Q6MZP7-3;Q6MZP7;Q6MZP7-4;Q6MZP7-2 Q6MZP7-3 LIN54 Protein lin-54 homolog 1 0 NFEES(1)PERK;NFEES(1)PERK ; 111.12 0.00052102 616900000 600270 578610 388770 942920 776600 630910 1005090 963330 461130 1142820 TRUE FALSE FALSE 733797.9906 646273.4063 532592.2011 994429.332 699278.9772 663943.472 790344.3107 727071.8071 553674.5613 857936.006 0.855306206 0.753288592 0.620783132 1.159094997 0.815071255 0.773884611 0.921215924 0.847466247 0.64535648 1 19.71051051 -11.53475303 2.294063261 3.943224658 0.825447275 0.122841619 0.142885335 4562810.23 906113.4452 69546463.05 0.035818608 2.92E-12 11.53475303 -3.117777383 NFEES(ph)PERK ddPTM_HeLa_A486_30min_R1 2 NFEESPERK 9 1 Q6MZP7-3;Q6MZP7;Q6MZP7-4;Q6MZP7-2 Q6MZP7-3 LIN54 Protein lin-54 homolog 1 0 NFEES(1)PERK;NFEES(1)PERK ; 131.69 0.00013376 685850000 669150 596270 316978 359821 582850 758390 960510 905190 526404 1170340 TRUE FALSE FALSE 622246.0405 549019.3936 439720.3706 837681.4723 509743.5181 664827.5525 720180.2388 699097.9972 572033.1226 877279.2464 0.709290734 0.625820565 0.501231931 0.954862976 0.58105047 0.757828884 0.820924742 0.79689335 0.652053636 1 19.74267661 -14 0.117790463 1.914540054 0.570327184 0.351514065 0.121558044 174.2947749 1.336527853 38.21715878 1.222147951 1.00E-14 14 -1.34421287 NFGIWLR ddPTM_HeLa_A485_30min_R1 2 NFGIWLR 7 0 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 138.48 0.0039489 153967000 179655 181326 217610 294290 393840 141767 288270 202174 198747 426780 FALSE FALSE TRUE 219618.6349 202530.4984 298112.9945 310366.3175 354627.9067 149189.7009 226678.7596 152590.5095 238633.6999 320391.6003 0.68546939 0.632134233 0.930464451 0.968709283 1.10685769 0.465647978 0.707505313 0.476262515 0.744818839 1 18.2894768 -6.272082059 24.995367 0.647904501 0.861234069 0.184800772 0.189644152 1134.808089 2665199.323 0.06774193 0.060346798 5.34E-07 6.272082059 0.213329568 NFGIWLR ddPTM_HeLa_A486_30min_R1 2 NFGIWLR 7 0 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 154.11 0.0027626 213650000 351220 351610 224030 155173 364140 337110 436980 398320 287370 430350 FALSE FALSE TRUE 326601.2917 323747.1431 310780.4157 361250.586 318466.1657 295520.7957 327642.9821 307631.2313 312279.463 322587.5589 1.012442305 1.003594634 0.963398641 1.119852815 0.987223955 0.916094832 1.015671476 0.953636378 0.968045588 1 18.29933127 -5.988630929 24.99090577 0.968498401 1.023245946 0.249848501 0.044274539 312.6975867 687351.0468 0.013597679 0.015406873 1.03E-06 5.988630929 0.054747545 NFHVFYQLLSGASEELLNK ddPTM_HeLa_A486_30min_R1 1 NFHVFYQLLSGASEELLNK 19 0 E9PDF6;O43795-2;O43795;E7EQD9 E9PDF6 MYO1B Unconventional myosin-Ib 0 0 56.529 0.023742 1169400 5720.2 7897.2 5651.2 3482.4 8062.7 5195.4 6465.8 6914.5 4217.2 6996.5 FALSE FALSE TRUE 5319.243519 7271.397111 7839.495984 8107.203191 7051.400984 4554.444371 4847.988452 5340.219292 4582.750292 5244.53086 1.014245823 1.386472366 1.494794519 1.545839543 1.344524643 0.86841788 0.924389346 1.018245375 0.873815106 1 12.35659801 -6.235636032 8.33608008 0.937294398 1.377565822 0.693039857 0.139503762 0.162847167 47.92575444 0.048531978 0.047783421 5.81E-07 6.235636032 0.440271424 NFKPS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 NFKPSPSK 8 1 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 NFKPS(0.818)PS(0.182)K;NFKPS(0.982)PS(0.018)K ; 86.911 0.002179 982200000 1446220 967280 652930 2624200 1517580 1183790 2227280 1529980 1039810 3791100 TRUE FALSE FALSE 1767926.65 1080394.982 894475.9777 2767553.401 1366484.407 1245771.414 1751403.433 1154750.006 1248490.329 2846048.54 0.621186401 0.379612282 0.314286972 0.972419606 0.480133908 0.437719665 0.615380732 0.405737987 0.438674995 1 21.44052884 -10.69528551 4.154620068 1.026143832 0.517669082 0.399327214 0.177215924 0.042737993 0.003134553 0.170881407 0.041783007 2.02E-11 10.69528551 -0.50847475 NFKPS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 NFKPSPSK 8 1 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 NFKPS(0.996)PS(0.004)K;NFKPS(0.976)PS(0.024)K ; 99.283 0.0011464 1443630000 3207100 2609700 928010 1959580 1979270 3904800 5286200 4489200 2238100 5980700 TRUE FALSE FALSE 2982298.851 2402897.868 1287360.325 4562001.272 1731011.501 3423065.477 3963536.848 3467107.159 2432100.31 4483093.792 0.665232313 0.535990987 0.28715891 1.017601122 0.38611985 0.763549824 0.884107501 0.773373773 0.542504891 1 22.09606325 -13.99999921 0.054607258 2.339696247 0.034669558 0.22845836 0.206740178 690.3378727 2.766735357 129.1266871 25.16201764 1.00E-14 13.99999921 -2.305026689 NFLNALTS(ph)PIEYQR ddPTM_HeLa_A486_30min_R1 1 NFLNALTSPIEYQR 14 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 NFLNALT(0.202)S(0.798)PIEYQR 109.1 0.00029705 65026000 121020 120630 91773 52589 145120 128190 171820 139170 107660 150240 TRUE FALSE FALSE 112537.1229 111070.8395 127309.9634 122429.8497 126917.6964 112375.2211 128828.8187 107484.0291 116992.0555 112618.9261 0.999273629 0.986253761 1.130449097 1.087116118 1.126965962 0.997836021 1.143935776 0.954404671 1.038831212 1 16.78108977 -9.606161812 6.063451974 1 1.053592946 0.054363363 0.064207717 1.94E-10 0 0.06238938 0.015131647 2.48E-10 9.606161812 0.053592946 NFMPALEETPFHSCTAGPNPT(ph)LGRPLSPKPSSPGSVLAR ddPTM_HeLa_A485_30min_R1 1 NFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLAR 39 2 F8VWK5;F8VUY0;F8VVS9;Q15583-4;Q15583-2;Q15583-3;Q15583 F8VWK5 TGIF1 Homeobox protein TGIF1 1 0 NFMPALEETPFHSCT(0.011)AGPNPT(0.572)LGRPLS(0.414)PKPS(0.001)S(0.001)PGSVLAR 91.236 4.12E-05 202230000 50206 26553 21341 76429 52213 31507 53998 43991 25105 103100 TRUE FALSE FALSE 61374.15149 29658.14237 29235.92397 80604.12274 47014.49039 33156.6578 42460.88618 33202.13827 30143.34322 77399.06741 0.792957248 0.383184751 0.377729667 1.041409482 0.607429675 0.428385753 0.548596871 0.428973363 0.389453571 1 16.24002856 -9.975294508 4.289736171 1.000017116 0.553237374 0.299394107 0.20403711 140201286.1 301080983.6 37592.96505 0.052358384 1.06E-10 9.975294508 -0.446779742 NFMPALEETPFHSCTAGPNPTLGRPLS(ph)PKPSSPGSVLAR ddPTM_HeLa_A485_30min_R1 1 NFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLAR 39 2 F8VWK5;F8VUY0;F8VVS9;Q15583-4;Q15583-2;Q15583-3;Q15583 F8VWK5 TGIF1 Homeobox protein TGIF1 1 0 NFMPALEETPFHS(0.001)CT(0.001)AGPNPT(0.124)LGRPLS(0.815)PKPS(0.018)S(0.02)PGS(0.022)VLAR 81.076 0.00018138 191200000 28358 20252 20790 49677 35874 25073 42943 32823 19060 74599 TRUE FALSE FALSE 34666.13927 22620.29523 28481.08614 52390.72872 32302.2586 26385.78351 33767.87724 24773.10779 22885.16717 56002.84219 0.619006784 0.403913343 0.508565013 0.935501247 0.576796772 0.471150793 0.602967205 0.442354474 0.408642959 1 15.77321243 -10.82028349 3.708010153 1.096073143 0.554351312 0.453246094 0.14756267 225215000.4 7332829.286 184446418.3 0.037611839 1.51E-11 10.82028349 -0.54172183 NFPNAIEHTLQWAR ddPTM_HeLa_A485_30min_R1 1 NFPNAIEHTLQWAR 14 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 131.06 0.00082209 0 42686 52961 48428 58941 71733 44702 72468 70489 39966 81002 FALSE FALSE TRUE 52181.35344 59154.32825 66343.53246 62160.79758 64591.01065 47042.5276 56984.61979 53201.46223 47986.80961 60809.69213 0.858109153 0.97277796 1.091002604 1.022218587 1.062182826 0.773602463 0.937097653 0.874884584 0.789130942 1 15.89201366 -6.250475138 24.91039785 0.87100807 1.005826253 0.359232599 0.084158079 754.9965277 1715328.568 0.027945053 0.027689028 5.62E-07 6.250475138 0.134818183 NFQAATESVPNSGNIHNGSLEQTEEPETSSHS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 NFQAATESVPNSGNIHNGSLEQTEEPETSSHSPSR 35 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 0 NFQAATESVPNSGNIHNGSLEQTEEPET(0.007)S(0.028)S(0.11)HS(0.427)PS(0.427)R 172.92 8.03E-15 631940000 47723 96731 86400 40682 135640 64187 109360 106310 78507 86907 TRUE FALSE FALSE 58338.81671 108042.849 118362.9554 42904.35465 122135.2053 67547.73207 85994.34261 80237.30581 94262.63479 65242.6843 0.894181736 1.656014772 1.814195058 0.657611732 1.8720138 1.035330364 1.318068739 1.229828396 1.444800069 1 15.99352852 -12.6502199 0.274822062 1.48E-10 1.359718807 0.059072578 0.37334254 288.999725 5.526602745 164.1123049 0.433331342 2.24E-13 12.6502199 1.359718807 NFQKPGT(ph)WRGSLDESSLGFGYPK ddPTM_HeLa_A486_30min_R1 1 NFQKPGTWRGSLDESSLGFGYPK 23 2 Q2KJU6;Q9BUZ4 Q2KJU6 TRAF4 TNF receptor-associated factor 4 1 0 NFQKPGT(0.494)WRGS(0.494)LDES(0.009)S(0.002)LGFGYPK 89.773 0.0021123 173940000 131360 99516 69599 95066 161490 126860 238430 215500 100970 224600 TRUE FALSE FALSE 122152.3423 91629.98973 96549.59673 221318.4524 141234.4184 111209.303 178772.2921 166435.3543 109722.1609 168358.6981 0.725548152 0.544254563 0.573475548 1.314565002 0.838889941 0.660549792 1.061853615 0.988575917 0.651716615 1 17.36117873 NFQKPGTWRGS(ph)LDESSLGFGYPK ddPTM_HeLa_A485_30min_R1 1 NFQKPGTWRGSLDESSLGFGYPK 23 2 Q2KJU6;Q9BUZ4 Q2KJU6 TRAF4 TNF receptor-associated factor 4 1 0 NFQKPGT(0.153)WRGS(0.847)LDESSLGFGYPK 147.85 7.41E-10 211600000 169860 172800 95454 151680 328630 240650 437440 568210 161570 298230 TRUE FALSE FALSE 207644.771 193007.4568 130766.4068 159965.8943 295910.4433 253250.0619 343977.3704 428855.6066 193995.617 223886.7495 0.92745449 0.862076283 0.584073899 0.714494693 1.321696992 1.131152524 1.536390033 1.915502402 0.866489944 1 17.77240962 -5.766143175 23.5923877 1.344837237 0.765031929 0.436900138 0.287641309 50.58003154 253689.6611 0.088857004 0.10421167 1.71E-06 5.766143175 -0.579805307 NFQKPGTWRGS(ph)LDESSLGFGYPK ddPTM_HeLa_A486_30min_R1 1 NFQKPGTWRGSLDESSLGFGYPK 23 2 Q2KJU6;Q9BUZ4 Q2KJU6 TRAF4 TNF receptor-associated factor 4 1 0 NFQKPGT(0.192)WRGS(0.808)LDESSLGFGYPK 124.82 1.71E-06 229370000 198680 149210 98427 124410 249770 207770 336970 336350 151380 343430 TRUE FALSE FALSE 184753.558 137386.0562 136540.5704 289632.7673 218441.5176 182137.4499 252656.5419 259770.4475 164501.7403 257432.8926 0.71767658 0.533677164 0.530392868 1.125080654 0.848537711 0.707514288 0.98144623 1.009080249 0.639008242 1 17.97383688 -5.239310304 24.96865027 0.89494087 0.587891662 0.485208714 0.145046786 680.844524 768208.6217 0.038947688 0.067390092 5.76E-06 5.239310304 -0.307049208 NFQPVIIFSFSK ddPTM_HeLa_A485_30min_R1 1 NFQPVIIFSFSK 12 0 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 0 110.39 0.004819 5950100 7213.3 7118.5 8169.9 11383 13306 7557 12483 10182 6646.7 18662 FALSE FALSE TRUE 8817.873699 7950.946652 11192.28599 12004.82447 11981.20792 7952.672835 9815.905073 7684.848535 7980.631723 14009.90685 0.629402736 0.567523163 0.798883683 0.856881105 0.855195402 0.567646375 0.700640281 0.548529595 0.569642026 1 13.77415974 -6.273721181 24.93501935 0.650534055 0.741497018 0.029668169 0.148600794 2133.092512 4330680.86 0.052737848 0.046850497 5.32E-07 6.273721181 0.090962963 NFQPVIIFSFSK ddPTM_HeLa_A486_30min_R1 1 NFQPVIIFSFSK 12 0 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 0 168.3 6.62E-06 5320500 11419 12175 9323.7 5995.1 10651 13762 16670 14190 9911.3 17971 FALSE FALSE TRUE 10618.58707 11210.20866 12934.08634 13956.89578 9315.052263 12064.18436 12498.98968 10959.24677 10770.41946 13470.94463 0.788258534 0.832176879 0.960146945 1.036074022 0.691492135 0.895570778 0.927848048 0.813547013 0.799529637 1 13.7175634 -7.277058981 24.17371811 0.854903778 0.877313961 0 0.102606352 4661.504641 7214344.022 0.056488664 0.027329128 5.28E-08 7.277058981 0.022410183 NFRNPLAK ddPTM_HeLa_A485_30min_R1 4 NFRNPLAK 8 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;; ;;; 133.55 0.00057741 735670000 1452131 1904007 1730088 1105175 1958585 1772493 1916810 1973960 1723206 1596910 FALSE FALSE TRUE 1775152.531 2126664.056 2370119.546 1165547.912 1763581.4 1865297.993 1507267.885 1489843.215 2069037.638 1198829.726 1.480737834 1.773950053 1.977027675 0.972238081 1.471085812 1.555932383 1.257282708 1.242747976 1.72588116 1 20.19319533 -1.000066865 0.040553413 7.71E-05 3.84923326 0.236640472 0.273803879 1110.400554 3.435132562 88.63749428 292.2205447 0.099984605 1.000066865 3.849156198 NFRNPLAK ddPTM_HeLa_A486_30min_R1 1 NFRNPLAK 8 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 103.74 0.0020493 318700000 1538200 1947100 1449600 110170 1745400 1592200 1330600 1541200 1565800 1150400 FALSE FALSE TRUE 1430380.123 1792804.705 2010923.942 256481.3277 1526475.657 1395770.552 997669.8063 1190302.404 1701524.805 862332.3522 1.658734152 2.079018258 2.331959292 0.297427468 1.770170924 1.618599312 1.156943496 1.380329059 1.973165915 1 19.71788448 NFS(ph)AAK ddPTM_HeLa_A485_30min_R1 2 NFSAAK 6 0 H0Y9J2;E9PBG7;E9PF82;Q13557-11;Q13557;Q13557-6;Q13557-10;Q13557-8;Q13557-12;Q13557-5;Q13557-9;Q13557-4;Q13557-3;H0Y6G2;Q13554-3;A0A2Q3DQE3;Q8WU40;Q13555-7;Q13554-5;Q13555-2;Q13555-9;Q13555-3;Q13554-4;Q13555-4;Q13555-8;Q13555-10;Q13555 H0Y9J2 CAMK2D;CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit gamma 1 0 NFS(1)AAK;NFS(1)AAK ; 90.15 0.015772 1135920000 570920 538750 449050 1359520 1154500 695050 1697000 1922760 1106370 2987000 TRUE FALSE FALSE 697919.1843 601752.126 615172.2815 1433787.135 1039553.926 731441.7432 1334422.087 1451200.095 1328408.311 2242395.872 0.311238169 0.268352316 0.274337056 0.63939965 0.463590724 0.326187607 0.595087649 0.647164987 0.592405796 1 21.09660956 -9.989497647 0.116144799 1.753503967 4.55E-11 0.783166509 0.10191707 19.82182478 0.468883432 6.108955362 1.660572048 1.02E-10 9.989497647 -1.753503967 NFS(ph)AAK ddPTM_HeLa_A486_30min_R1 3 NFSAAK 6 0 H0Y9J2;E9PBG7;E9PF82;Q13557-11;Q13557;Q13557-6;Q13557-10;Q13557-8;Q13557-12;Q13557-5;Q13557-9;Q13557-4;Q13557-3;H0Y6G2;Q13554-3;A0A2Q3DQE3;Q8WU40;Q13555-7;Q13554-5;Q13555-2;Q13555-9;Q13555-3;Q13554-4;Q13555-4;Q13555-8;Q13555-10;Q13555 H0Y9J2 CAMK2D;CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit gamma 1 0 NFS(1)AAK;NFS(1)AAK;NFS(1)AAK ;; 85.29 0.017778 1598170000 1703660 2019550 644610 1335180 1402920 3683500 5207100 5576500 1913000 4328400 TRUE FALSE FALSE 1584242.232 1859513.503 894220.2553 3108366.516 1226952.692 3229067.221 3904228.505 4306852.684 2078820.38 3244540.467 0.488279387 0.573120761 0.275607675 0.958029819 0.378159158 0.99523099 1.203322487 1.327415308 0.640713346 1 21.62958273 -6.356599191 5.573378016 1.072373273 0.546965795 0.528105806 0.23480215 0.178194601 8.361268401 0.081537883 0.071663644 4.40E-07 6.356599191 -0.525407478 NFS(ph)CGSVEFDEADLESLR ddPTM_HeLa_A485_30min_R1 1 NFSCGSVEFDEADLESLR 18 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 NFS(0.998)CGS(0.002)VEFDEADLESLR 120.32 3.34E-05 24235000 31380 27494 36834 43569 50337 41350 55013 59980 39434 57532 TRUE FALSE FALSE 38360.37274 30709.18413 50460.42939 45949.06415 45325.27154 43515.02206 43259.02314 45269.81096 47348.04209 43190.3312 0.888170377 0.711019881 1.168326984 1.063873855 1.049430979 1.007517675 1.001590447 1.048146881 1.096264853 1 15.39842076 -4.757714053 24.9999996 1.052714819 0.799595099 0.729312672 0.062085061 44.69125752 299902.6992 0.015644069 0.0382145 1.75E-05 4.757714053 -0.25311972 NFS(ph)CGSVEFDEADLESLR ddPTM_HeLa_A486_30min_R1 2 NFSCGSVEFDEADLESLR 18 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 NFS(0.958)CGS(0.042)VEFDEADLESLR;NFS(0.998)CGS(0.002)VEFDEADLESLR ; 109.72 0.00011195 40280000 28818 29979 21077 21487.2 34120 36197 40551 38970 27590 41739 TRUE FALSE FALSE 26798.00702 27603.35486 29238.57886 50023.2875 29840.35144 31731.38216 30404.7109 30097.38171 29981.52341 31287.28272 0.856514362 0.882254784 0.934519598 1.598837711 0.953753373 1.014194248 0.971791356 0.961968541 0.958265493 1 14.93328875 NFS(ph)GPR ddPTM_HeLa_A485_30min_R1 1 NFSGPR 6 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 NFS(1)GPR 81.642 0.020362 533380000 333670 380640 333080 398590 540820 333370 542820 518970 372040 586940 TRUE FALSE FALSE 407893.7404 425152.5369 456300.1526 420363.9624 486974.0619 350824.7377 426842.0726 391691.7938 446705.0154 440626.6598 0.925712803 0.964881555 1.035570913 0.95401391 1.105185197 0.796194987 0.968715948 0.888942566 1.013794798 1 18.74919726 -6.249183719 24.99291131 0.928787705 0.995031071 0.155168763 0.073643717 1400.83718 2856723.078 0.02334691 0.023189081 5.63E-07 6.249183719 0.066243366 NFS(ph)GPR ddPTM_HeLa_A486_30min_R1 2 NFSGPR 6 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 NFS(1)GPR;NFS(1)GPR ; 95.815 0.013678 1018530000 940480 876370 641550 351300 859350 847370 1042630 965990 754460 1035600 TRUE FALSE FALSE 874557.2086 806923.2495 889975.3413 817844.1537 751562.3099 742830.1048 781752.9462 746055.1644 819857.2003 776279.0194 1.12660163 1.039475793 1.146463216 1.053544065 0.968160019 0.956911222 1.007051494 0.961065733 1.056137265 1 19.56621577 -5.57133533 4.652222862 0.989229978 1.098422502 0.649598173 0.037223942 0.11932541 5.620371783 0.010650105 0.014181478 2.68E-06 5.57133533 0.109192524 NFS(ph)INSVASTYSEFAR ddPTM_HeLa_A486_30min_R1 1 NFSINSVASTYSEFAR 16 0 O43663-2;O43663-4 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 NFS(1)INSVASTYSEFAR 103.5 0.00032417 88313000 53439 57638 48463 23950 48928 53351 59324 64010 51761 49877 TRUE FALSE FALSE 49693.20206 53070.55497 67229.17148 55756.81037 42790.994 46769.09605 44480.50773 49436.32033 56247.68516 37387.47456 1.329140378 1.419474185 1.798173647 1.491323258 1.144527533 1.250929532 1.189716831 1.322269581 1.50445265 1 15.1902674 -5.678088621 6.874035832 1.250448853 1.527203588 0.396200738 0.164963043 0.239072516 16.32859789 0.050058542 0.064590585 2.10E-06 5.678088621 0.276754735 NFS(ph)SPLLVHEPPPVCATSK ddPTM_HeLa_A485_30min_R1 1 NFSSPLLVHEPPPVCATSK 19 0 Q6ZMT1;Q6ZMT1-2 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 NFS(0.98)S(0.02)PLLVHEPPPVCATSK 160 2.07E-12 253640000 289020 221060 162070 385580 332630 238190 402080 382440 222770 476000 TRUE FALSE FALSE 353311.5019 246911.044 222026.4373 406643.2591 299512.1893 250661.2601 316172.3233 288645.9904 267477.8956 357341.9601 0.988721005 0.690965718 0.621327641 1.137966722 0.838166862 0.701460472 0.884789246 0.807758457 0.748520816 1 18.4469458 -11.06216245 2.091784575 1.240357544 0.821807814 0.116777292 0.144711636 12216025.22 3534213.117 14021635.74 0.039007333 8.67E-12 11.06216245 -0.41854973 NFSCGS(ph)VEFDEADLESLR ddPTM_HeLa_A485_30min_R1 1 NFSCGSVEFDEADLESLR 18 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 NFS(0.016)CGS(0.984)VEFDEADLESLR 169.84 2.33E-14 0 50139 48736 52767 57784 74547 47847 75780 61868 48445 73755 TRUE FALSE FALSE 61292.24757 54435.25125 72287.70912 60940.5936 67124.83893 50352.19493 59588.98393 46694.77599 58167.46714 55369.23586 1.106972972 0.983131705 1.305557283 1.100621901 1.212312901 0.909389378 1.076211059 0.843334304 1.050537654 1 15.75679699 -6.263437443 24.96836528 0.972372658 1.139727844 0.411577241 0.099078633 179.1207062 2238333.074 0.033063389 0.030628944 5.45E-07 6.263437443 0.167355186 NFSCGS(ph)VEFDEADLESLR ddPTM_HeLa_A486_30min_R1 2 NFSCGSVEFDEADLESLR 18 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 NFSCGS(1)VEFDEADLESLR;NFSCGS(1)VEFDEADLESLR ; 241.65 2.27E-45 119543000 103550 140788 104585 53154 135884 123794 168370 171101 113916 128475 TRUE FALSE FALSE 96291.67973 129631.4461 145083.1129 123745.1983 118840.1617 108521.5549 126242.0452 132145.0374 123790.3306 96304.02377 0.999871822 1.346064692 1.506511433 1.284943177 1.234010346 1.126864182 1.310869891 1.372165277 1.285411821 1 16.55530846 -5.653689284 5.587487539 1.240193754 1.306490276 0.024275588 0.15190827 0.881056652 40.15402312 0.046334804 0.059955134 2.22E-06 5.653689284 0.066296523 NFSFLEVS(ph)FTTVY(ph)IPK ddPTM_HeLa_A485_30min_R1 1 NFSFLEVSFTTVYIPK 16 0 A6NCV1 A6NCV1 OR6C74 Olfactory receptor 6C74 2 0 NFSFLEVS(0.472)FT(0.509)T(0.491)VY(0.528)IPK 45.608 0.037273 88325000 111030 73891 81268 206760 114620 85104 103460 77424 72253 230650 TRUE FALSE FALSE 135728.2405 82531.90968 111332.415 218054.7753 103208.0303 89559.91384 81354.92581 58435.6426 86753.51436 173153.1998 0.783862156 0.476640973 0.64297059 1.259317041 0.596050379 0.517229332 0.469843618 0.337479427 0.501021722 1 17.40168952 -3.967478316 11.05291705 0.631897034 1.131499269 0.022477094 0.264175678 103776.3718 1284199.353 0.069498904 884774.9344 0.000107776 3.967478316 0.499602235 NFSINS(ph)VASTYSEFAR ddPTM_HeLa_A486_30min_R1 1 NFSINSVASTYSEFAR 16 0 O43663-2;O43663-4 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 NFS(0.096)INS(0.904)VASTYSEFAR 222.11 8.06E-34 100190000 35815 38793 29883 20111 39655 35787 47255 48910 35456 48013 TRUE FALSE FALSE 33304.55345 35718.9014 41454.49789 46819.42435 34681.10013 31371.9638 35431.29919 37774.2607 38529.35463 35990.23229 0.925377563 0.992460985 1.15182635 1.30089253 0.963625349 0.871679948 0.984469867 1.049569794 1.070550318 1 15.13531779 NFSNS(ph)PGPYVFCITEK ddPTM_HeLa_A486_30min_R1 1 NFSNSPGPYVFCITEK 16 0 D6RJE1;D6RE69;D6R9I1;A0A1B0GV48;D6RBC4;Q8NAP3 D6RJE1 ZBTB38 Zinc finger and BTB domain-containing protein 38 1 0 NFSNS(1)PGPYVFCITEK 121.26 5.76E-06 0 48071 60870 40980 24019 46920 65908 83793 74479 43541 77876 TRUE FALSE FALSE 44701.47114 56046.43952 56848.55348 55917.44585 41034.85609 57776.94106 62827.10513 57521.75757 47315.16894 58375.34271 0.765759464 0.960104676 0.973845306 0.957894948 0.70294844 0.989749068 1.076261007 0.985377642 0.810533467 1 15.83307149 NFTEVHPDYGSHIQALLDKYNAEK(ac)PK ddPTM_HeLa_A486_30min_R1 1 NFTEVHPDYGSHIQALLDKYNAEKPK 26 2 P04040 P04040 CAT Catalase 0 1 NFTEVHPDYGSHIQALLDK(0.026)YNAEK(0.974)PK 62.374 0.0092638 26928000 44795 75649 53457 38654 111600 90270 132920 131470 69234 93353 FALSE TRUE FALSE 41655.10182 69654.29773 74156.98203 89988.46547 97602.08737 79133.4052 99662.01012 101537.151 75235.25886 69976.80117 0.595270163 0.995391281 1.059736667 1.285975694 1.39477778 1.130851995 1.424215003 1.451011611 1.075145728 1 16.0945891 -4.170151165 1.038634485 1.278798117 0.163094995 0.639539844 0.148488521 1.258758468 0.979013347 0.046423683 1.627965949 6.76E-05 4.170151165 -1.115703122 NFTKPQDGDVIAPLIT(ph)PQKK ddPTM_HeLa_A485_30min_R1 2 NFTKPQDGDVIAPLITPQKK 20 2 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 0 NFTKPQDGDVIAPLIT(1)PQKK;NFTKPQDGDVIAPLIT(1)PQKK ; 152.88 9.95E-10 5201100000 1910370 967450 522859 3590950 1855080 1629120 3959210 2794640 993469 5097080 TRUE FALSE FALSE 2335325.216 1080584.862 716286.3021 3787114.506 1670381.722 1714418.204 3113292.44 2109250.158 1192849.116 3826471.761 0.610307709 0.282397187 0.187192366 0.989714479 0.436533137 0.448041515 0.813619604 0.551225852 0.31173603 1 21.86758332 -11.60573717 2.098011767 9.999067765 0.51767729 0.282490217 0.23206234 8446526.525 368750.6252 362848851.3 0.058924702 2.48E-12 11.60573717 -9.481390475 NFTKPQDGDVIAPLIT(ph)PQKK ddPTM_HeLa_A486_30min_R1 2 NFTKPQDGDVIAPLITPQKK 20 2 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 0 NFTKPQDGDVIAPLIT(1)PQKK;NFTKPQDGDVIAPLIT(1)PQKK ; 188.23 3.64E-19 8724600000 4121500 3320800 1050770 2693500 2847800 5868800 8551900 6799900 3410000 8058200 TRUE FALSE FALSE 3832604.133 3057647.714 1457656.285 6270604.122 2490602.369 5144767.126 6412124.167 5251711.211 3705581.546 6040374.27 0.634497791 0.506201698 0.241318869 1.038115163 0.412325836 0.851729859 1.061544183 0.869434736 0.613468865 1 22.52620651 -5.844059957 1.022089631 0.877405205 0.499842091 0.298095692 0.225431219 0.676606164 1.520483777 0.106020595 0.148785513 1.43E-06 5.844059957 -0.377563114 NFVFHTLS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 NFVFHTLSPVK 11 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 NFVFHTLS(1)PVK;NFVFHTLS(1)PVK ; 160.27 5.66E-08 830590000 2289330 1768450 1145030 3479310 2123250 1578990 2976030 1977790 1429050 4438400 TRUE FALSE FALSE 2798583.56 1975254.844 1568624.246 3669375.895 1911851.775 1661663.475 2340176.879 1492733.901 1715847.227 3331988.563 0.839913916 0.592815614 0.4707772 1.10125705 0.573787016 0.498700234 0.702336408 0.448000908 0.51496192 1 21.66795202 -10.19135973 4.949927736 1.000036199 0.635744859 0.244410785 0.190875509 7.67E-05 1.25E-05 0.185864633 0.045074323 6.44E-11 10.19135973 -0.364291339 NFVFHTLS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 NFVFHTLSPVK 11 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 NFVFHTLS(1)PVK;NFVFHTLS(1)PVK ; 159.18 8.97E-08 1688870000 1362250 1207080 431501 625120 739420 1267960 1578550 1352940 973010 2028200 TRUE FALSE FALSE 1266763.31 1111426.585 598589.7432 1455310.952 646675.0488 1111531.987 1183580.094 1044905.096 1057351.29 1520325.519 0.833218475 0.731045142 0.393724723 0.957236417 0.425353019 0.731114471 0.778504392 0.687290375 0.695476908 1 20.53594882 -10.43970655 0.463084378 1.176160552 0.679454056 0.245570733 0.161565681 44.01028314 4.643080127 9.36243901 0.081926974 3.63E-11 10.43970655 -0.496706496 NFVFHTLS(ph)PVKAEAAK ddPTM_HeLa_A485_30min_R1 2 NFVFHTLSPVKAEAAK 16 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 NFVFHTLS(1)PVKAEAAK;NFVFHTLS(1)PVKAEAAK ; 227.08 2.78E-34 2096380000 1164390 872650 511370 2235600 1684320 1147860 2565200 2254400 777810 3172300 TRUE FALSE FALSE 1423404.538 974698.8265 700547.0429 2357725.167 1516623.187 1207960.175 2017124.064 1701504.865 933909.3325 2381503.992 0.597691435 0.409278687 0.294161608 0.990015207 0.636834199 0.507225761 0.846995878 0.714466518 0.392151067 1 21.18344154 -14 0.102846526 2.103491263 0.375639693 0.240946932 0.205099022 277.6627934 1.927287034 67.46796946 3.280512853 1.00E-14 14 -1.727851571 NFVFHTLS(ph)PVKAEAAK ddPTM_HeLa_A486_30min_R1 3 NFVFHTLSPVKAEAAK 16 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 NFVFHTLS(1)PVKAEAAK;NFVFHTLS(1)PVKAEAAK;NFVFHTLS(1)PVKAEAAK ;; 192.98 1.47E-18 4401400000 2018690 1601240 598520 1564380 1521650 2207700 3725400 3071210 1364400 3921150 TRUE FALSE FALSE 1877190.256 1474351.911 830282.9729 3641955.699 1330790.468 1935336.42 2793265.517 2371962.527 1482667.291 2939268.518 0.638658988 0.501605043 0.282479456 1.239068727 0.452762468 0.658441517 0.950326756 0.806990757 0.504434107 1 21.48702573 -4.504880716 0.093458285 1.174294713 3.02E-13 0.143056246 0.257396526 124.607435 2.039037737 6.555363131 22.057163 3.13E-05 4.504880716 -1.174294713 NFYES(ph)DDDQKEK ddPTM_HeLa_A485_30min_R1 4 NFYESDDDQKEK 12 1 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK ;;; 195.92 2.46E-14 2134560000 1756680 863790 577873 5063960 1514800 1078728 2481220 1491825 917985 6507100 TRUE FALSE FALSE 2147447.406 964802.7265 791652.27 5340591.312 1363981.193 1135208.53 1951087.077 1125952.58 1102216.169 4884999.724 0.439600313 0.197503128 0.162057792 1.09326338 0.279218274 0.232386611 0.399403723 0.230491841 0.225632801 1 22.21992705 -10.25031337 4.572366241 1.000237392 0.363911716 0.353771775 0.258606434 724306479.7 742.7709819 1811151.58 0.063842742 5.62E-11 10.25031337 -0.636325676 NFYES(ph)DDDQKEK ddPTM_HeLa_A486_30min_R1 6 NFYESDDDQKEK 12 1 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFYES(1)DDDQKEK;NFY(0.003)ES(0.997)DDDQKEK;NFYES(1)DDDQKEK ;;;;; 217.39 9.29E-22 2944260000 4263536 3627183 1209571 3778160 2323370 5595910 7637550 6101550 3040507 10701190 TRUE FALSE FALSE 3964684.143 3339751.809 1677949.285 8795747.418 2031951.27 4905543.519 5726554.208 4712360.261 3304060.595 8021542.371 0.494254591 0.416347836 0.20918038 1.096515734 0.253311792 0.611546171 0.713896897 0.587463114 0.411898416 1 22.93544823 -14 0.210216857 3.158943528 0.473933749 0.2506982 0.240011524 211.0155493 2.103860271 192.8859783 0.50290544 1.00E-14 14 -2.68500978 NGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_HeLa_A485_30min_R1 1 NGAAGPHSPDPLLDEQAFGDLTDLPVVPK 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK 175.38 8.91E-15 70638000 37131 31518 28340 62199 48737 33320 56637 47228 28989 75565 TRUE FALSE FALSE 45390.66285 35203.75593 38824.14533 65596.77387 43884.57315 35064.58368 44536.04227 35645.25895 34806.8264 56728.03617 0.800145147 0.620570679 0.684390787 1.156337823 0.773595846 0.618117355 0.785079923 0.62835348 0.613573618 1 15.7917743 -6.008607951 24.97043507 0.70780664 0.813701737 0.047705791 0.16917126 1189.520712 3450637.641 0.055095907 0.059522504 9.80E-07 6.008607951 0.105895097 NGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_HeLa_A486_30min_R1 2 NGAAGPHSPDPLLDEQAFGDLTDLPVVPK 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;NGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK ; 173.6 1.41E-14 142670000 120481 90812 49680 48500 78880 96625 125448 116263 75682 148813 TRUE FALSE FALSE 112035.9041 83615.72639 68917.42648 112910.4511 68986.13487 84704.38991 94059.58355 89792.4529 82242.1767 111549.2562 1.004362628 0.749585692 0.617820583 1.012202635 0.61843653 0.759345179 0.843211212 0.804957881 0.7372723 1 16.76732137 -10.06554476 4.763090799 1.000005711 0.789621872 0.189041307 0.127609935 164268081.9 0.181278458 13420.37257 0.029490461 8.60E-11 10.06554476 -0.210383839 NGDECAYHHPIS(ph)PCK ddPTM_HeLa_A485_30min_R1 2 NGDECAYHHPISPCK 15 0 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;G3V411;Q6PJT7-8;Q6PJT7-6;H0YJ51 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK ; 204.5 1.36E-25 3560900000 1119640 858600 689160 2081480 1429060 805430 1681910 1244520 800630 2656730 TRUE FALSE FALSE 1368700.055 959005.8012 944108.9623 2195185.982 1286777.769 847601.0694 1322556.189 939299.5187 961309.0972 1994456.104 0.686252283 0.480835752 0.473366629 1.100643918 0.645177282 0.424978553 0.663116218 0.470955223 0.481990601 1 20.92756394 -10.05869593 4.364986762 1.00002947 0.604147734 0.285165898 0.188542852 264498144.7 691063399.7 127662.2559 0.048979122 8.74E-11 10.05869593 -0.395881736 NGDECAYHHPIS(ph)PCK ddPTM_HeLa_A486_30min_R1 5 NGDECAYHHPISPCK 15 0 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;G3V411;Q6PJT7-8;Q6PJT7-6;H0YJ51 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK;NGDECAYHHPIS(1)PCK ;;;; 218.72 1.12E-33 4605490000 4671400 5836910 2609630 3750130 4759260 6657220 9345200 8076960 4773870 9354510 TRUE FALSE FALSE 4343958.983 5374371.994 3620148.624 8730492.161 4162309.232 5835919.882 7006932.117 6238012.527 5187672.895 7012079.808 0.619496512 0.766444784 0.516273163 1.245064574 0.593591252 0.832266609 0.999265882 0.889609459 0.739819431 1 22.74141099 -5.188128946 25 0.883914089 0.647308926 0.329678922 0.172366079 180.9089121 61691.70568 0.044932319 0.077825055 6.48E-06 5.188128946 -0.236605163 NGEVVHTPET(ph)SV ddPTM_HeLa_A485_30min_R1 2 NGEVVHTPETSV 12 0 O15427 O15427 SLC16A3 Monocarboxylate transporter 4 1 0 NGEVVHTPET(0.769)S(0.231)V;NGEVVHTPET(0.5)S(0.5)V ; 110.15 0.0020646 1105630000 1367550 1042210 673660 2066940 936650 889750 1391720 1021000 999370 4024200 TRUE FALSE FALSE 1671756.78 1164087.393 922874.8673 2179851.698 843393.8372 936335.9342 1094367.653 770598.1491 1199934.392 3021041 0.553371099 0.385326579 0.305482404 0.721556476 0.279173251 0.309938175 0.362248527 0.255077024 0.397192356 1 21.52661433 -10.25485127 4.430040758 1.00030401 0.39196765 0.643661097 0.134649414 185706786.7 300.4786508 575889.1202 0.032723825 5.56E-11 10.25485127 -0.608336359 NGEVVHTPETS(ph)V ddPTM_HeLa_A486_30min_R1 1 NGEVVHTPETSV 12 0 O15427 O15427 SLC16A3 Monocarboxylate transporter 4 1 0 NGEVVHTPET(0.131)S(0.869)V 97.86 0.0013171 552380000 570960 558750 409480 197250 679300 717090 634770 570880 726800 1124700 TRUE FALSE FALSE 530938.6524 514472.6151 568041.6223 459207.9685 594095.8598 628622.7266 475943.8321 440903.0862 789799.6092 843067.7994 0.629769815 0.61023872 0.673779289 0.544686879 0.704683372 0.745637216 0.564538027 0.522974649 0.936816244 1 19.68528913 -7.845028574 5.957423944 0.989518893 0.628180999 0.807092056 0.067362478 0.089783543 4.798118793 0.067091256 0.017521489 1.43E-08 7.845028574 -0.361337893 NGFVVLK ddPTM_HeLa_A485_30min_R1 2 NGFVVLK 7 0 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 ; ; 122.79 0.0095065 47884000 81174 79807 65294 107035 128239 83202 143877 133740 72074 167875 FALSE FALSE TRUE 99230.87625 89139.73442 89448.96771 112882.051 115471.0749 87558.32807 113136.5036 100940.0553 86538.5907 126026.852 0.787378838 0.707307475 0.709761184 0.89569841 0.916241841 0.694759305 0.897717445 0.800940861 0.686667875 1 16.94337163 -11.48252333 2.233677067 3.494126241 0.79152489 0.35839851 0.084808967 2853740.175 311211.8 36189276.63 0.022175429 3.29E-12 11.48252333 -2.70260135 NGFVVLK ddPTM_HeLa_A486_30min_R1 1 NGFVVLK 7 0 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 107.66 0.023048 18892000 19076 20997 13757 10574 24305 20614 27796 26182 18542 28119 FALSE FALSE TRUE 17738.87091 19333.12125 19084.07883 24616.80638 21256.44026 18070.85427 20841.1468 20220.93015 20149.23549 21077.81938 0.841589473 0.917225872 0.905410493 1.167901003 1.008474353 0.857339839 0.988771487 0.959346401 0.955944974 1 14.363438 -5.026548777 24.99418282 0.988483759 0.88738521 0.291646919 0.074038556 985.3524289 927654.1284 0.021286521 0.037024161 9.41E-06 5.026548777 -0.101098549 NGGK(ac)LSNDHQQNQSK ddPTM_HeLa_A486_30min_R1 1 NGGKLSNDHQQNQSK 15 1 C9JP58;F8WFA4;B7WNX0;B5MCB3;Q4FZB7-4;Q4FZB7-2;Q4FZB7 C9JP58 SUV420H1 Histone-lysine N-methyltransferase SUV420H1 0 1 NGGK(1)LSNDHQQNQSK 87.148 0.0041747 3799200 1564 1966.3 1822 317.14 2329 1890.5 2853.5 2331.2 2059.5 3371 FALSE TRUE FALSE 1454.371677 1810.483227 2527.527195 738.3179474 2036.875103 1657.269331 2139.524119 1800.43665 2238.019118 2526.879658 0.575560325 0.716489691 1.000256259 0.292185639 0.806083145 0.655856058 0.84670598 0.712513809 0.885684884 1 11.30314124 -7.895198625 0.707059552 1.001821419 0.678440681 0.256709421 0.174025414 1.019359174 1.183344652 0.166703652 0.067715724 1.27E-08 7.895198625 -0.323380738 NGGS(ph)FEDDLSLGAEANHLHESDAQIENCNNILAK ddPTM_HeLa_A485_30min_R1 2 NGGSFEDDLSLGAEANHLHESDAQIENCNNILAK 34 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 NGGS(0.503)FEDDLS(0.414)LGAEANHLHES(0.082)DAQIENCNNILAK;NGGS(0.997)FEDDLS(0.003)LGAEANHLHESDAQIENCNNILAK ; 187.87 3.10E-21 188182000 32171.9 36572.3 35961.5 21488.5 69893 33766 59213 59363 52736 63363 TRUE FALSE FALSE 39328.42816 40849.11235 49265.15533 22662.36234 62934.20751 35533.93555 46561.65882 44804.13117 63319.63148 47567.77021 0.826787297 0.85875609 1.035683513 0.476422633 1.323043044 0.747017054 0.978848885 0.941901018 1.331145673 1 15.53769678 -7.616909997 7.239880278 1.163445768 0.896371352 0.198506891 0.216371685 0.342730734 22.48643525 0.13878147 0.051517953 2.42E-08 7.616909997 -0.267074416 NGGSFEDDLS(ph)LGAEANHLHESDAQIENCNNILAK ddPTM_HeLa_A485_30min_R1 1 NGGSFEDDLSLGAEANHLHESDAQIENCNNILAK 34 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 NGGS(0.423)FEDDLS(0.577)LGAEANHLHESDAQIENCNNILAK 185.97 3.75E-21 138690000 17751 23918 31079 17102 46596 25437 52982 42959 42823 38733 TRUE FALSE FALSE 21699.64871 26715.00204 42576.41541 18036.23896 41956.73863 26768.84199 41661.96288 32423.23789 51417.1833 29077.57593 0.746267459 0.918749283 1.464235379 0.620280005 1.442924222 0.92060088 1.432786659 1.115059865 1.768276126 1 14.82761938 -3.428861298 0.392854453 1.302529149 4.08E-11 0.193242385 0.313688809 18.1183172 1.336203784 0.235811964 12.648672 0.000372511 3.428861298 -1.302529149 NGHDGDTHQEDDGEKS(ph)D ddPTM_HeLa_A485_30min_R1 4 NGHDGDTHQEDDGEKSD 17 1 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 0 NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D ;;; 222.24 1.67E-34 2396270000 1275800 1025520 694060 2991850 1037620 972240 1631960 1334790 1026380 3557490 TRUE FALSE FALSE 1559597.309 1145445.643 950821.6762 3155287.19 934310.9095 1023144.983 1283278.414 1007430.66 1232365.051 2670673.214 0.5839716 0.428897717 0.35602322 1.181457609 0.349840971 0.383103772 0.480507464 0.377219742 0.461443596 1 21.34877203 -10.11435886 3.397160096 1.000468639 0.510719045 0.281209606 0.23435272 36354815.19 57775043.57 192881.4438 0.059456247 7.68E-11 10.11435886 -0.489749594 NGHDGDTHQEDDGEKS(ph)D ddPTM_HeLa_A486_30min_R1 3 NGHDGDTHQEDDGEKSD 17 1 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 0 NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D;NGHDGDTHQEDDGEKS(1)D ;; 244.22 7.81E-43 1566320000 1247990 552830 554790 945270 589680 1911270 1541550 1122430 1230700 2661680 TRUE FALSE FALSE 1160512.346 509021.7374 769619.5458 2200636.331 515716.8359 1675476.94 1155837.885 866877.1915 1337378.067 1995178.003 0.581658551 0.255125977 0.385739791 1.102977442 0.258481617 0.839763137 0.579315672 0.434486141 0.670305138 1 20.92808603 -14 0.173220774 2.676785092 0.468192792 0.227793812 0.246033737 208.520728 1.979783622 120.7542162 0.84554325 1.00E-14 14 -2.2085923 NGHVGISFVPK ddPTM_HeLa_A485_30min_R1 2 NGHVGISFVPK 11 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 0 ; ; 106.49 0.0019322 152875000 506230 541010 474210 768290 1007230 496470 852200 731740 538830 1211120 FALSE FALSE TRUE 618839.117 604276.4133 649640.0125 810259.7373 906946.6446 522464.4015 670120.5082 552279.6177 646968.2386 909210.073 0.680633811 0.664616936 0.714510356 0.891168896 0.997510555 0.574635518 0.737035948 0.607427958 0.711571789 1 19.79425414 -11.34725417 2.173128971 2.517421011 0.733065923 0.311168672 0.120028776 6446938.199 679245.0561 48158299.52 0.033853779 4.50E-12 11.34725417 -1.784355088 NGHVGISFVPK ddPTM_HeLa_A486_30min_R1 2 NGHVGISFVPK 11 0 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 0 ; ; 106.67 0.0019176 132952000 693800 842550 584860 213740 985180 876630 1122340 1042810 814030 903710 FALSE FALSE TRUE 645168.2028 775783.2695 811333.4551 497597.5218 861609.538 768480.3035 841518.6611 805384.9274 884590.7758 677415.1338 0.952397091 1.14521101 1.197690182 0.7345533 1.271907719 1.134430374 1.242249574 1.188908968 1.305832615 1 19.36968069 NGIDILVGT(ph)PGR ddPTM_HeLa_A485_30min_R1 2 NGIDILVGTPGR 12 0 Q9BQ39;A0A087WVC1;Q9NR30;Q9NR30-2 Q9BQ39;Q9NR30 DDX50;DDX21 ATP-dependent RNA helicase DDX50;Nucleolar RNA helicase 2 1 0 NGIDILVGT(1)PGR;NGIDILVGT(1)PGR ; 133.48 0.00010161 95791000 165288 180555 146445 189785 260550 152132 233500 251910 153028 270050 TRUE FALSE FALSE 202055.7454 201669.3366 200621.0996 200152.474 234608.7272 160097.3963 183610.8175 190128.6775 183739.3159 202731.5049 0.996666727 0.994760714 0.989590146 0.987278588 1.157238621 0.789701612 0.905684677 0.937834885 0.906318512 1 17.62921078 -6.268676942 24.99949253 0.903883672 1.019346325 0.428417994 0.067442299 571.4334109 1973801.769 0.023313775 0.020972962 5.39E-07 6.268676942 0.115462653 NGIDILVGT(ph)PGR ddPTM_HeLa_A486_30min_R1 1 NGIDILVGTPGR 12 0 Q9BQ39;A0A087WVC1;Q9NR30;Q9NR30-2 Q9BQ39;Q9NR30 DDX50;DDX21 ATP-dependent RNA helicase DDX50;Nucleolar RNA helicase 2 1 0 NGIDILVGT(1)PGR 113.48 0.0009663 0 77692 73844 58257 37100 83448 79555 91554 90175 66575 94812 TRUE FALSE FALSE 72246.192 67992.3325 80815.67058 86370.67493 72981.17372 69740.31296 68646.22084 69644.12101 72345.7746 71070.45808 1.016543216 0.956689099 1.13712044 1.215282373 1.026884808 0.981284135 0.965889664 0.979930662 1.017944397 1 16.11696238 -5.993793893 24.99429072 0.988285311 1.082055128 0.3090524 0.065136331 221.4140742 891706.5331 0.022562386 0.025516295 1.01E-06 5.993793893 0.093769817 NGIGPGSHSEFAASIGS(ph)PK ddPTM_HeLa_A485_30min_R1 1 NGIGPGSHSEFAASIGSPK 19 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 NGIGPGSHSEFAASIGS(1)PK 177.6 9.28E-14 256610000 232070 208570 125730 403050 293240 179730 378400 316360 150040 583780 TRUE FALSE FALSE 283693.1709 232960.4472 172242.7591 425067.6009 264043.996 189140.3849 297551.7488 238772.214 180151.6518 438254.3897 0.647325338 0.531564435 0.393020043 0.969910652 0.602490248 0.431576704 0.678947561 0.544825607 0.411066394 1 18.74140902 -10.21667666 4.640544405 1.000095561 0.581897535 0.383782796 0.160012447 219843328.1 39.35875635 227579.3035 0.038883853 6.07E-11 10.21667666 -0.418198026 NGIS(ph)PTNPTK ddPTM_HeLa_A485_30min_R1 1 NGISPTNPTK 10 0 Q9UJF2-2;Q9UJF2;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8 Q9UJF2-2;Q9UJF2;A0A3B3ITG3 RASAL2;DAB2IP Ras GTPase-activating protein nGAP;Disabled homolog 2-interacting protein 1 0 NGIS(0.653)PT(0.347)NPTK 123.28 0.0001276 159910000 415740 365550 267990 568550 553850 340370 626490 535490 307350 776640 TRUE FALSE FALSE 508219.9287 408297.8926 367130.653 599608.4469 498706.7493 358191.2469 492635.2935 404160.2379 369032.3258 583037.941 0.871675569 0.700293864 0.629685698 1.028420973 0.855358999 0.614353238 0.844945515 0.693197148 0.63294736 1 19.15323024 NGIS(ph)PTNPTK ddPTM_HeLa_A486_30min_R1 1 NGISPTNPTK 10 0 Q9UJF2-2;Q9UJF2;A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8 Q9UJF2-2;Q9UJF2;A0A3B3ITG3 RASAL2;DAB2IP Ras GTPase-activating protein nGAP;Disabled homolog 2-interacting protein 1 0 NGIS(0.537)PT(0.463)NPTK 137.58 8.36E-05 0 452990 427800 216280 336220 429080 525550 740790 664510 363830 817410 TRUE FALSE FALSE 421237.7402 393899.57 300029.4082 782737.1516 375260.7854 460712.9844 555436.5067 513215.5792 395367.0773 612725.2156 0.6874823 0.642864958 0.489663883 1.277468483 0.612445475 0.751907989 0.906501793 0.837595004 0.645260008 1 19.2248807 NGLEGS(ph)SEETSFHDESLQDDREEIENNSYHMHPAGIILTK ddPTM_HeLa_A486_30min_R1 1 NGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTK 40 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NGLEGS(0.8)S(0.134)EET(0.029)S(0.037)FHDESLQDDREEIENNSYHMHPAGIILTK 183.12 6.68E-22 512310000 66098 59340 49982 8264.2 70280 62150 76897 71828 61816 38235 TRUE FALSE FALSE 61464.87153 54637.68229 69336.36896 19239.47525 61464.82707 54482.56489 57656.55727 55474.33239 67174.26065 28660.70713 2.144569262 1.906361976 2.419213477 0.671284039 2.14456771 1.900949779 2.011693466 1.935553514 2.343775411 1 14.80678658 NGLEGSS(ph)EETSFHDESLQDDREEIENNSYHMHPAGIILTK ddPTM_HeLa_A486_30min_R1 1 NGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTK 40 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NGLEGS(0.229)S(0.254)EET(0.254)S(0.254)FHDES(0.009)LQDDREEIENNSYHMHPAGIILTK 63.116 0.0051951 82248000 25495 33460 17391 5247.8 34351 24692 34090 30084 22232 25894 TRUE FALSE FALSE 23707.93216 30808.50774 24125.26095 12217.14361 30042.37727 21645.75209 25560.32143 23234.52993 24159.08766 19409.97386 1.221430401 1.587251377 1.242931141 0.629426072 1.547780409 1.115187081 1.31686532 1.197040764 1.24467389 1 14.24451055 -13.99999996 0.198251348 5.24E-08 1.270003064 0.073666219 0.247368674 432.2647049 4.269169985 172.4934641 0.617783184 1.00E-14 13.99999996 1.270003012 NGLEGSSEETS(ph)FHDESLQDDREEIENNSYHMHPAGIILTK ddPTM_HeLa_A485_30min_R1 1 NGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTK 40 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NGLEGS(0.001)S(0.003)EET(0.227)S(0.77)FHDESLQDDREEIENNSYHMHPAGIILTK 159.67 3.38E-12 365960000 98574 102720 91979 79419 167030 106060 192650 185320 116470 146590 TRUE FALSE FALSE 120501.4462 114732.2105 126005.8597 83757.45887 150399.9067 111613.1376 151488.7537 139869.9794 139844.4607 110047.8108 1.094991762 1.04256695 1.145010144 0.761100637 1.366677862 1.014224061 1.37657217 1.270992839 1.270760951 1 16.74777092 -5.785472519 24.99998178 1.22797359 1.022755821 0.301758142 0.152211362 280.6279269 291915.8979 0.04517133 0.051245392 1.64E-06 5.785472519 -0.20521777 NGLEGSSEETS(ph)FHDESLQDDREEIENNSYHMHPAGIILTK ddPTM_HeLa_A486_30min_R1 1 NGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTK 40 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NGLEGSS(0.003)EET(0.224)S(0.773)FHDESLQDDREEIENNSYHMHPAGIILTK 168.53 1.89E-15 278970000 86278 73872 50348 11302 85520 77034 91066 87493 68592 54893 TRUE FALSE FALSE 80230.35774 68018.11368 69844.09397 26311.62717 74793.28416 67530.3283 68280.3236 67572.75386 74537.60979 41147.43551 1.949826441 1.653034092 1.697410619 0.639447558 1.817690051 1.641179516 1.65940654 1.642210578 1.811476435 1 15.3285149 NGLEGSSEETSFHDES(ph)LQDDREEIENNSYHMHPAGIILTK ddPTM_HeLa_A485_30min_R1 2 NGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTK 40 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NGLEGS(0.009)S(0.008)EET(0.013)S(0.011)FHDES(0.958)LQDDREEIENNSYHMHPAGIILTK;NGLEGS(0.001)S(0.003)EET(0.003)S(0.002)FHDES(0.819)LQDDREEIENNS(0.172)YHMHPAGIILTK ; 107.86 6.71E-06 649120000 79506 101359 90952 50186 161026 83266 155969 147262 90790 103421 TRUE FALSE FALSE 97191.83541 113212.0533 124598.9296 52927.5341 144993.686 87625.67901 122644.949 111145.7636 109010.7202 77640.04802 1.25182606 1.458165679 1.604828086 0.681704036 1.867511545 1.128614436 1.579660911 1.431551969 1.404052715 1 16.24451339 -10.64151989 7.619088207 0.999291462 1.381640676 0.124759547 0.30078731 0.003372687 0.000158686 0.271327376 0.065694772 2.28E-11 10.64151989 0.382349214 NGLHRPVS(ph)TDFAQYNSYGDVSGGVR ddPTM_HeLa_A485_30min_R1 1 NGLHRPVSTDFAQYNSYGDVSGGVR 25 1 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 NGLHRPVS(0.751)T(0.248)DFAQY(0.001)NSYGDVSGGVR 75.956 0.0038965 290690000 39673 50109 40000 56295 68146 45567 76612 68804 37581 78607 TRUE FALSE FALSE 48498.12198 55968.81166 54797.66454 59370.2533 61361.14496 47952.81766 60243.22034 51929.71112 45123.16199 59011.72155 0.821838792 0.9484355 0.928589492 1.006075602 1.039812826 0.812598182 1.020868715 0.879989767 0.764647443 1 15.84871393 -7.500534447 24.3466701 0.862322023 0.941822414 0.073035019 0.089324282 1046.356411 1140133.661 0.047572235 0.022540433 3.16E-08 7.500534447 0.079500391 NGLPGS(ph)RPGSPER ddPTM_HeLa_A485_30min_R1 1 NGLPGSRPGSPER 13 1 H0YEP0;E9PRM3;E9PRL6;Q92993-2;Q92993-4;Q92993;Q92993-3 H0YEP0 KAT5 Histone acetyltransferase KAT5 1 0 NGLPGS(0.594)RPGS(0.406)PER 87.498 0.0079385 0 191220 220390 173970 224430 274910 145360 224230 191670 148160 267580 TRUE FALSE FALSE 233756.2293 246162.6934 238328.7425 236690.0426 247538.9951 152970.8248 176321.4287 144662.632 177894.353 200877.2304 1.163677082 1.225438507 1.186439807 1.178282088 1.232289964 0.761514008 0.877757167 0.720154453 0.885587444 1 17.61595452 -6.257927902 24.99969845 0.833309421 1.197141276 0.848090298 0.073538561 101.4436974 722222.1913 0.022993557 0.022123479 5.52E-07 6.257927902 0.363831854 NGLPGSRPGS(ph)PER ddPTM_HeLa_A485_30min_R1 1 NGLPGSRPGSPER 13 1 H0YEP0;E9PRM3;E9PRL6;Q92993-2;Q92993-4;Q92993;Q92993-3 H0YEP0 KAT5 Histone acetyltransferase KAT5 1 0 NGLPGS(0.019)RPGS(0.981)PER 58.577 0.016375 381240000 499000 582270 526310 579290 649080 497790 651300 648220 442320 770990 TRUE FALSE FALSE 610000.8285 650361.4114 721013.9706 610935.1459 584455.3161 523853.5147 512144.4344 489243.0286 531089.5668 578796.382 1.053912649 1.123644569 1.245712643 1.055526891 1.009777072 0.905073927 0.884843876 0.845276584 0.917575823 1 19.14269638 -5.892395647 1.870003127 0.898615823 1.138038018 0.733296245 0.059911232 0.164959075 1.181912861 0.021904172 0.026063066 1.28E-06 5.892395647 0.239422195 NGLPGSRPGS(ph)PER ddPTM_HeLa_A486_30min_R1 2 NGLPGSRPGSPER 13 1 H0YEP0;E9PRM3;E9PRL6;Q92993-2;Q92993-4;Q92993;Q92993-3 H0YEP0 KAT5 Histone acetyltransferase KAT5 1 0 NGLPGS(0.153)RPGS(0.847)PER;NGLPGS(0.139)RPGS(0.861)PER ; 62.94 0.004947 351620000 1384140 1395490 1105540 470870 1445320 1213630 1459690 1399710 1135100 1556910 TRUE FALSE FALSE 1287118.934 1284906.29 1533634.695 1096209.156 1264034.489 1063904.67 1094460.123 1081026.588 1233491.382 1167049.602 1.102882801 1.100986871 1.314112693 0.939299542 1.083102626 0.911619067 0.937800862 0.926290182 1.05693141 1 20.15443445 -5.285017917 24.99923007 0.975997648 1.165493418 0.573652279 0.076281017 540.5380623 573106.2351 0.021392204 0.031750975 5.19E-06 5.285017917 0.18949577 NGS(ph)EADIDEGLYSR ddPTM_HeLa_A485_30min_R1 2 NGSEADIDEGLYSR 14 0 P22314;Q5JRR9;P22314-2;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 NGS(1)EADIDEGLYSR;NGS(1)EADIDEGLYSR ; 312.28 1.07E-68 397890000 352200 365040 292770 605590 490660 395180 645040 546190 297420 802100 TRUE FALSE FALSE 430545.6749 407728.2526 401077.8062 638671.8483 441808.1676 415871.0137 507221.9345 412236.0461 357109.4659 602151.2316 0.715012529 0.677119353 0.666074875 1.06065024 0.73371629 0.690642138 0.842349742 0.684605502 0.593056108 1 19.19976634 NGS(ph)EADIDEGLYSR ddPTM_HeLa_A486_30min_R1 2 NGSEADIDEGLYSR 14 0 P22314;Q5JRR9;P22314-2;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 NGS(1)EADIDEGLYSR;NGS(1)EADIDEGLYSR ; 186.98 1.56E-17 571750000 582420 581820 354110 363830 517980 631450 873480 769520 449210 1093990 TRUE FALSE FALSE 541595.3656 535714.4642 491230.8754 847014.627 453010.1184 553548.1191 654926.0653 594317.0945 488147.8845 820047.7833 0.660443668 0.653272255 0.599027136 1.032884478 0.552419173 0.675019347 0.798643785 0.724734713 0.595267611 1 19.64534845 -10.22000217 3.45139962 1.000599142 0.703268746 0.325410218 0.129854355 55265428.44 86347177.42 358246.5835 0.031302761 6.03E-11 10.22000217 -0.297330395 NGS(ph)LDSPGKQDTEEDEEEDEKDKGK ddPTM_HeLa_A485_30min_R1 2 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGS(0.5)LDS(0.5)PGKQDTEEDEEEDEKDKGK;NGS(0.377)LDS(0.311)PGKQDT(0.311)EEDEEEDEKDKGK ; 113.24 0.00025854 1535890000 364386 173682 111887 2295640 300904 262269 879230 555710 128589 2901730 TRUE FALSE FALSE 445442.4086 193992.5991 153278.6573 2421045 270944.9412 276000.9993 691375.3279 419421.2512 154395.6328 2178382.113 0.204483137 0.089053522 0.070363531 1.111395923 0.124378978 0.126699993 0.317380189 0.192537961 0.070876286 1 21.05482561 -10.42100823 5.811325804 1.000318098 0.263332905 0.362838398 0.295505328 0.001242332 0.000123776 0.291866939 0.070758871 3.79E-11 10.42100823 -0.736985193 NGS(ph)PEIK ddPTM_HeLa_A485_30min_R1 1 NGSPEIK 7 0 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 NGS(1)PEIK 82.029 0.011016 135440000 312570 198220 133780 765510 267690 193750 400910 266900 219470 1032800 TRUE FALSE FALSE 382100.1181 221400.1047 183270.7891 807327.8729 241037.8437 203894.4504 315252.3034 201442.3565 263515.6159 775341.9673 0.492814957 0.285551555 0.236374138 1.041253933 0.310879398 0.262973577 0.406597755 0.25981098 0.339870182 1 19.56447323 -10.19522337 4.564373616 1.000125311 0.403288846 0.385494634 0.225739589 313988248.7 97.81227097 417804.2634 0.055652196 6.38E-11 10.19522337 -0.596836465 NGS(ph)PNKQPSSEPEWTPEPR ddPTM_HeLa_A485_30min_R1 1 NGSPNKQPSSEPEWTPEPR 19 1 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 NGS(0.995)PNKQPS(0.002)S(0.003)EPEWTPEPR 116.65 1.49E-05 506560000 129410 110910 67884 280900 161340 98509 223500 171880 84638 319340 TRUE FALSE FALSE 158196.808 123879.9597 92997.11649 296244.8557 145276.4231 103666.7789 175747.3992 129726.1605 101624.0703 239734.415 0.659883597 0.516738324 0.387917256 1.235721019 0.60598902 0.432423434 0.733092073 0.541124479 0.423902719 1 17.8710775 -10.39619092 3.034921546 1.005523897 0.619511217 0.198317418 0.231955806 57772333.37 72120536.29 2819325.036 0.059086013 4.02E-11 10.39619092 -0.38601268 NGS(ph)PNKQPSSEPEWTPEPR ddPTM_HeLa_A486_30min_R1 2 NGSPNKQPSSEPEWTPEPR 19 1 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 NGS(1)PNKQPSSEPEWTPEPR;NGS(1)PNKQPSSEPEWTPEPR ; 178.69 2.67E-18 2055040000 182520 145830 60402 121330 123880 189990 275430 210300 127370 324850 TRUE FALSE FALSE 169726.2905 134273.8997 83791.27202 282462.3717 108341.8153 166550.9655 206514.5008 162419.2808 138410.5342 243505.4456 0.697012299 0.551420521 0.344104305 1.159983798 0.444925636 0.683972242 0.848089866 0.667004717 0.568408373 1 17.89359451 -14 0.247495676 2.95944015 0.634747155 0.178113242 0.213742206 320.2684041 3.184293073 317.8884422 0.31190559 1.00E-14 14 -2.324692995 NGS(ph)PPPGAPSSR ddPTM_HeLa_A485_30min_R1 5 NGSPPPGAPSSR 12 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 NGS(1)PPPGAPSSR;NGS(0.999)PPPGAPS(0.001)S(0.001)R;NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR ;;;; 108.34 0.00048029 567554000 713563 836617 737145 985224 1063987 772551 1189830 1137350 685429 1354540 TRUE FALSE FALSE 872292.6276 934452.0805 1009845.611 1039044.292 958052.7184 813000.5758 935613.1005 858413.1292 822988.3132 1016878.106 0.857814346 0.918942078 0.993084229 1.021798272 0.942150994 0.799506421 0.920083828 0.844165219 0.809328383 1 19.95571532 -6.086355638 9.804568974 0.867879887 0.953147386 0.218536944 0.067389646 0.655184078 70.98919539 0.02224715 0.022262519 8.20E-07 6.086355638 0.0852675 NGS(ph)PPPGAPSSR ddPTM_HeLa_A486_30min_R1 5 NGSPPPGAPSSR 12 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR;NGS(1)PPPGAPSSR ;;;; 141.59 2.43E-07 1926200000 1397111 1459543 953469 794123 1435047 1441837 1966770 1730197 1144913 2212610 TRUE FALSE FALSE 1299180.734 1343883.497 1322677.732 1848758.477 1255050.024 1263957.81 1474663.344 1336268.913 1244154.981 1658558.054 0.78331942 0.810272208 0.797486544 1.114678182 0.756711543 0.762082344 0.889123742 0.805681121 0.750142558 1 20.66149808 NGS(ph)PS(ph)KCPR ddPTM_HeLa_A485_30min_R1 1 NGSPSKCPR 9 1 C9J5P6;P29475-2;P29475;P29475-5 C9J5P6 NOS1 "Nitric oxide synthase;Nitric oxide synthase, brain" 2 0 NGS(1)PS(1)KCPR 62.408 0.029555 246690000 291920 354360 377700 336850 413270 313570 354940 308660 348120 441030 TRUE FALSE FALSE 356856.5969 395799.3195 517426.9474 355251.2626 372123.3877 329988.0403 279104.1694 232960.651 417984.4909 331089.3376 1.0778257 1.195445684 1.562801603 1.072977056 1.123936489 0.996673716 0.842987489 0.703618705 1.262452285 1 18.33686103 -5.955448677 1.682872177 0.932729001 1.261057139 0.330491366 0.181627832 0.395735174 2.288351495 0.070053266 0.080220422 1.11E-06 5.955448677 0.328328138 NGS(ph)PTPAGSLGGGAVATAGGPGSR ddPTM_HeLa_A485_30min_R1 1 NGSPTPAGSLGGGAVATAGGPGSR 24 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 NGS(0.987)PT(0.013)PAGSLGGGAVATAGGPGSR 135.12 2.23E-06 622470000 34373 41814 41285 72713 51615 41936 70528 63299 33272 83020 TRUE FALSE FALSE 42019.15526 46703.78357 56558.03951 76685.12707 46476.02937 44131.70411 55459.11664 47774.821 39949.38521 62324.64187 0.674198102 0.749363048 0.907474761 1.230414243 0.745708727 0.708093986 0.889842524 0.766547862 0.640988604 1 15.92751507 NGS(ph)PTPAGSLGGGAVATAGGPGSR ddPTM_HeLa_A486_30min_R1 1 NGSPTPAGSLGGGAVATAGGPGSR 24 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 NGS(0.969)PT(0.031)PAGSLGGGAVATAGGPGSR 134.68 1.53E-13 0 34001 32611 15932 17579 23864 35149 39822 32363 27454 45590 TRUE FALSE FALSE 31617.70548 30026.78559 22101.29707 40924.80039 20870.7546 30812.67375 29858.11441 24994.65138 29833.73482 34173.96726 0.925198565 0.878645004 0.646729041 1.19754315 0.610720858 0.901641695 0.873709341 0.731394491 0.872995945 1 15.06061012 NGS(ph)YGESSLEAHIWQEEEEVVQANRR ddPTM_HeLa_A485_30min_R1 3 NGSYGESSLEAHIWQEEEEVVQANRR 26 1 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 NGS(0.999)YGESSLEAHIWQEEEEVVQANRR;NGS(1)YGESSLEAHIWQEEEEVVQANRR;NGS(0.997)YGES(0.003)SLEAHIWQEEEEVVQANRR ;; 173.25 3.29E-14 99327000 6768.3 12987.3 7986.2 7574 15626.2 6609.4 11737.3 11113.7 6187 12283.3 TRUE FALSE FALSE 8273.884985 14506.05176 10940.62771 7987.748442 14070.40066 6955.457964 9229.52997 8388.047649 7428.674149 9221.299367 0.897258039 1.57310279 1.186451852 0.86622808 1.525858786 0.754281765 1.000892564 0.909638362 0.805599499 1 13.17075434 -6.283350492 24.96578905 0.895110469 1.209582343 0.333294974 0.223248587 947.463632 1079548.053 0.076040454 0.067116098 5.21E-07 6.283350492 0.314471873 NGS(ph)YGESSLEAHIWQEEEEVVQANRR ddPTM_HeLa_A486_30min_R1 2 NGSYGESSLEAHIWQEEEEVVQANRR 26 1 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 NGS(1)YGESSLEAHIWQEEEEVVQANRR;NGS(0.999)YGES(0.001)SLEAHIWQEEEEVVQANRR ; 130.55 5.26E-06 65946000 9517.8 11154.3 7395.7 1551.5 13112.5 8171.7 11419.2 13187.9 10389 10196 TRUE FALSE FALSE 8850.65137 10270.39264 10259.5131 3611.970408 11467.80798 7163.558738 8561.99538 10185.30306 11289.52688 7642.855235 1.15802944 1.343790027 1.342366536 0.472594377 1.500461232 0.937288293 1.120261357 1.332656808 1.477134727 1 12.89989599 -7.2560562 22.86273806 1.303671816 1.123879766 0.047224953 0.286570238 380.2452862 1614953.747 0.136753077 0.075740775 5.55E-08 7.2560562 -0.17979205 NGSLDS(ph)PGKQDT(ph)EEDEEEDEKDKGK ddPTM_HeLa_A486_30min_R1 1 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 2 0 NGS(0.009)LDS(0.991)PGKQDT(1)EEDEEEDEKDKGK 138.8 5.46E-07 1362700000 155980 126430 28519 670980 76947 284860 593280 430150 63363 1394000 TRUE FALSE FALSE 145046.6075 116411.2263 39562.32057 1562075.349 67295.58976 249716.8694 444835.0689 332214.2351 68855.35586 1044933.327 0.138809438 0.111405411 0.037861096 1.494904325 0.064401803 0.238978759 0.425706653 0.317928644 0.065894497 1 19.99497946 -11.10259862 2.480541016 2.195475653 0.33467231 0.196620674 0.410543315 105009873.9 29929576.26 708578509.9 0.103013811 7.90E-12 11.10259862 -1.860803343 NGSLDS(ph)PGKQDTEEDEEEDEKDK ddPTM_HeLa_A485_30min_R1 1 NGSLDSPGKQDTEEDEEEDEKDK 23 2 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGS(0.054)LDS(0.946)PGKQDTEEDEEEDEKDK 156.37 2.18E-10 442370000 113400 44076 22447 502030 76381 62261 169690 89128 34249 567610 TRUE FALSE FALSE 138625.4388 49230.30479 30751.0794 529454.6277 68776.23945 65520.88969 133434.3453 67269.21825 41122.46015 426115.2731 0.325323797 0.115532833 0.072166105 1.242515021 0.161402897 0.153763298 0.313141428 0.157866245 0.096505483 1 18.70088424 -10.60175627 2.644916264 1.062073483 0.297971735 0.294440886 0.328188631 25541799.51 23512173.5 10996712.17 0.08680966 2.50E-11 10.60175627 -0.764101748 NGSLDS(ph)PGKQDTEEDEEEDEKDK ddPTM_HeLa_A486_30min_R1 1 NGSLDSPGKQDTEEDEEEDEKDK 23 2 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGS(0.029)LDS(0.968)PGKQDT(0.002)EEDEEEDEKDK 94.549 0.0006905 644980000 455370 404320 119650 951760 272340 624120 1237400 826580 287410 2368900 TRUE FALSE FALSE 423450.9145 372280.2107 165981.6843 2215745.379 238180.5777 547122.42 927789.4321 638385.7781 312322.9302 1775712.021 0.238468237 0.209651231 0.093473312 1.247806712 0.134132435 0.308114387 0.522488681 0.359509746 0.175886026 1 20.7599662 -11.00605375 2.846347124 1.650497519 0.37481673 0.263388265 0.317982555 145488574.7 83009953.89 619517176.5 0.080625909 9.86E-12 11.00605375 -1.275680789 NGSLDS(ph)PGKQDTEEDEEEDEKDKGK ddPTM_HeLa_A485_30min_R1 1 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGS(0.039)LDS(0.959)PGKQDT(0.002)EEDEEEDEKDKGK 122.47 2.01E-05 2356900000 397580 155780 83676 2537900 368670 315340 948550 578370 129130 3496100 TRUE FALSE FALSE 486020.2994 173997.1159 114631.2344 2676539.051 331963.9203 331850.7148 745884.5436 436523.8507 155045.2065 2624586.611 0.185179753 0.066295056 0.04367592 1.019794523 0.126482364 0.126439232 0.284191248 0.166320993 0.059074144 1 21.32365878 -10.26332575 4.18145446 1.000631652 0.237222324 0.416543594 0.273003682 1535656073 2914120396 12500157.71 0.069674754 5.45E-11 10.26332575 -0.763409328 NGSLDS(ph)PGKQDTEEDEEEDEKDKGK ddPTM_HeLa_A486_30min_R1 2 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGSLDS(1)PGKQDTEEDEEEDEKDKGK;NGS(0.022)LDS(0.844)PGKQDT(0.134)EEDEEEDEKDKGK ; 183.49 2.69E-20 4517060000 1003419 671456 109444 2753420 227056 1408730 3025440 1837400 447969 5625470 TRUE FALSE FALSE 933084.5098 618247.3812 151823.6478 6410100.91 198576.5193 1234935.216 2268442.912 1419064.13 486799.3136 4216815.696 0.221277043 0.14661475 0.036004336 1.520128308 0.047091581 0.292859661 0.537951638 0.336525054 0.115442397 1 22.00772254 -11.36325741 2.23967544 5.083658984 0.372907649 0.176077291 0.413670746 42390047.72 4103359.181 878736923.5 0.103007611 4.33E-12 11.36325741 -4.710751335 NGSLDSPGKQDT(ph)EEDEEEDEKDKGK ddPTM_HeLa_A485_30min_R1 2 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGSLDS(0.009)PGKQDT(0.991)EEDEEEDEKDKGK;NGS(0.131)LDS(0.399)PGKQDT(0.47)EEDEEEDEKDKGK ; 145.59 1.86E-09 3259960000 1049630 507050 196258 5302500 832440 659920 2423120 1631820 385920 6853800 TRUE FALSE FALSE 1283116.572 566345.0868 268862.0012 5592162.148 749559.3507 694472.3908 1905400.617 1231613.586 463370.6041 5145273.795 0.249377705 0.110070933 0.052254168 1.086854144 0.145679196 0.134972874 0.370320549 0.239367939 0.090057521 1 22.29481642 -10.36740256 4.021011831 1.002028476 0.28165838 0.366012428 0.285975197 805040221.4 1879909635 20878866.78 0.072318101 4.29E-11 10.36740256 -0.720370096 NGSLDSPGKQDT(ph)EEDEEEDEKDKGK ddPTM_HeLa_A486_30min_R1 3 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSS4;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGSLDSPGKQDT(1)EEDEEEDEKDKGK;NGSLDS(0.001)PGKQDT(0.999)EEDEEEDEKDKGK;NGSLDS(0.003)PGKQDT(0.997)EEDEEEDEKDKGK ;; 154.63 6.89E-10 2501010000 522410 388049 61174 1705360 208187 843910 1855470 1322430 262958 3812000 TRUE FALSE FALSE 485791.7567 357298.584 84862.2111 3970164.264 182074.2452 739796.9644 1391211.781 1021341.557 285751.4112 2857450.388 0.170008816 0.125041046 0.029698577 1.389407942 0.063719127 0.258901071 0.486871718 0.357431073 0.10000223 1 21.44629702 -11.1097653 2.37803271 2.198814496 0.342773979 0.218484913 0.378884905 33765937.76 9132736.624 218887469 0.099724425 7.77E-12 11.1097653 -1.856040517 NGSMGS(ph)PVNQQPK ddPTM_HeLa_A486_30min_R1 2 NGSMGSPVNQQPK 13 0 A0A0A0MRW1;A0A0A0MRV9;Q5T586;A0A0A0MRW2;Q5T593;A0A0A0MRW0;A0A0A0MRW3;Q8IW50-3;Q8IW50-7;Q8IW50-2;Q8IW50-5;Q8IW50-6;Q8IW50-4;Q8IW50 A0A0A0MRW1 FAM219A Protein FAM219A 1 0 NGS(0.003)MGS(0.997)PVNQQPK;NGS(0.038)MGS(0.962)PVNQQPK ; 154.72 3.29E-08 92242000 233430 198412 111132 86979 185619 225000 270240 234600 195131 364450 TRUE FALSE FALSE 217067.7624 182689.1105 154165.2866 202491.5077 162336.9342 197241.7876 202623.0937 181186.7013 212045.1122 273189.3478 0.79456891 0.668727064 0.56431661 0.741213042 0.594228638 0.721996627 0.741694708 0.663227548 0.776183676 1 18.05954171 -8.667046022 0.755587643 1.005871795 0.676190608 0.663018894 0.067075315 1.434045236 1.157581699 0.08193823 0.02338378 2.15E-09 8.667046022 -0.329681187 NGSTAVAESVAS(ph)PQK ddPTM_HeLa_A485_30min_R1 4 NGSTAVAESVASPQK 15 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK ;;; 335.43 1.70E-90 1922120000 1851350 1486430 948800 3245450 2327570 1446550 3179200 2513390 1214860 4158110 TRUE FALSE FALSE 2263176.42 1660255.058 1299800.603 3422740.716 2095828.958 1522289.121 2499937.948 1896977.162 1458671.259 3121569.701 0.725012297 0.531865445 0.416393266 1.096480631 0.671402262 0.48766783 0.800859243 0.607699761 0.467287742 1 21.57384025 -10.5962542 3.13207593 1.019137858 0.647834526 0.240470308 0.189231851 219692578.3 245676879.9 34710933.32 0.047620335 2.53E-11 10.5962542 -0.371303332 NGSTAVAESVAS(ph)PQK ddPTM_HeLa_A486_30min_R1 4 NGSTAVAESVASPQK 15 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK ;;; 255.93 3.03E-50 1980950000 2222520 1819630 734580 1236370 1560030 2215830 3192260 2702340 1552260 3951130 TRUE FALSE FALSE 2066732.825 1675435.892 1019029.049 2878331.843 1364356.491 1942463.424 2393522.784 2087076.174 1686811.147 2961741.33 0.697810036 0.565692849 0.344064162 0.971837687 0.460660246 0.655851814 0.808147139 0.704678748 0.569533581 1 21.49801421 -14 0.186911115 2.500120013 0.575438191 0.294821419 0.166195001 171.247947 1.667179835 95.63088305 0.46356236 1.00E-14 14 -1.924681822 NGT(ph)YKFCFSNEFS(ph)T(ph)FTHK ddPTM_HeLa_A486_30min_R1 1 NGTYKFCFSNEFSTFTHK 18 1 A0A0A6YYA0;Q86XR7-2;Q9Y3B3-2;Q9Y3B3 A0A0A6YYA0 TMED7-TICAM2;TMED7 Transmembrane emp24 domain-containing protein 7 3 0 NGT(0.968)Y(0.004)KFCFS(0.028)NEFS(0.691)T(0.691)FT(0.619)HK 48.641 0.025163 864860000 734640 1007000 995450 48283 1332200 636210 388650 582910 958670 78261 TRUE FALSE FALSE 683145.5297 927201.6526 1380914.899 112405.2641 1165103.054 557720.8787 291405.6593 450194.1178 1041768.287 58663.93621 11.64506806 15.80530923 23.53941771 1.916087998 19.8606355 9.507048364 4.967373111 7.674120541 17.75824049 1 15.84018626 -6.036683281 0.867168718 8.195806168 15.65300509 0.160086574 6.708268958 1.184362646 1.957281613 3.825501377 4.547376451 9.19E-07 6.036683281 7.457198923 NGTGGLFQGKT(ph)PLRK ddPTM_HeLa_A485_30min_R1 1 NGTGGLFQGKTPLRK 15 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 NGT(0.001)GGLFQGKT(0.999)PLRK 56.708 0.036133 708100000 236050 188000 133310 345050 284050 211150 440850 406120 136390 433450 TRUE FALSE FALSE 288558.5081 209984.9646 182626.9165 363899.2078 255768.9846 222205.4875 346658.7961 306518.4332 163762.222 325398.8921 0.886783929 0.645315549 0.56124013 1.118317292 0.786016766 0.682871064 1.0653349 0.941977495 0.503266071 1 18.31184981 -5.231056298 24.99543682 0.865398058 0.692533477 0.14995608 0.188648572 1370.570311 1127533.961 0.050800174 0.087974707 5.87E-06 5.231056298 -0.172864581 NGTGQS(ph)SDSEDLPVLDNSSK ddPTM_HeLa_A486_30min_R1 1 NGTGQSSDSEDLPVLDNSSK 20 0 P29374 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 NGT(0.081)GQS(0.459)S(0.459)DSEDLPVLDNSSK 104.03 5.52E-05 25871000 63140 59414 42277 27883 63222 56041 79691 69797 46365 89276 TRUE FALSE FALSE 58714.21206 54705.81826 58647.78662 64913.03313 55292.10724 49127.2312 59751.46891 53905.74676 50383.95553 66920.70851 0.877369851 0.817472192 0.876377252 0.969999191 0.826233142 0.734111044 0.89286964 0.805516677 0.752890348 1 16.0301651 -5.950264589 24.99971836 0.82304905 0.882108639 0.076567318 0.078284145 243.9137776 122603.0304 0.02360468 0.026765184 1.12E-06 5.950264589 0.059059589 NGTGQSS(ph)DSEDLPVLDNSSK ddPTM_HeLa_A485_30min_R1 1 NGTGQSSDSEDLPVLDNSSK 20 0 P29374 P29374 ARID4A AT-rich interactive domain-containing protein 4A 1 0 NGT(0.003)GQS(0.197)S(0.799)DS(0.001)EDLPVLDNSSK 181.64 6.52E-19 61985000 76584 95682 79958 88664 110140 71060 104280 82723 57956 118730 TRUE FALSE FALSE 93619.84659 106871.1776 109537.7915 93507.48981 99174.07488 74780.59172 81999.72611 62435.05455 69587.2376 89132.79606 1.050341184 1.199010715 1.228928031 1.04908063 1.112655266 0.838979534 0.919972555 0.700472299 0.780714178 1 16.44366874 -6.228482827 1.66820292 0.818159238 1.150977773 0.680367206 0.094323198 0.199596903 1.101185074 0.038986188 0.036374186 5.91E-07 6.228482827 0.332818535 NGTSGSDS(ph)PGQAVEAEEIVK ddPTM_HeLa_A486_30min_R1 1 NGTSGSDSPGQAVEAEEIVK 20 0 Q05D32 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 NGTSGSDS(1)PGQAVEAEEIVK 160.98 2.98E-13 140750000 142260 138690 69540 74242 138800 151470 188840 188300 122580 212710 TRUE FALSE FALSE 132288.3086 127699.6993 96467.75035 172839.128 121390.4097 132783.1714 141590.2347 145428.2006 133205.3331 159446.0315 0.829674514 0.800896066 0.605018196 1.083997679 0.761326002 0.832778152 0.888013539 0.912084165 0.835425829 1 17.28270866 -14 0.046009932 1.720856691 0.460422522 0.199165654 0.11088184 1041.039909 3.549325938 95.36940517 23.94923471 1.00E-14 14 -1.26043417 NGTSIIQGALTQLIQLYHR ddPTM_HeLa_A485_30min_R1 1 NGTSIIQGALTQLIQLYHR 19 0 Q8N1B4;Q8N1B4-2;A0A0G2JIG2 Q8N1B4 VPS52 Vacuolar protein sorting-associated protein 52 homolog 0 0 258.82 3.38E-47 8112500 8076.4 8510.9 7799 10612 12077 5092.8 11095 8365.2 6678.3 13865 FALSE FALSE TRUE 9872.967317 9506.17572 10684.17464 11191.70669 10874.57148 5359.451133 8724.462612 6313.621584 8018.573553 10408.71067 0.948529326 0.913290418 1.026464755 1.075225073 1.044756822 0.514900577 0.838188599 0.606570956 0.770371452 1 13.34550375 -6.236409142 24.99754885 0.727178375 1.002209993 0.492185044 0.129130412 594.5916496 593815.4894 0.040393748 0.040377916 5.80E-07 6.236409142 0.275031618 NGTSIIQGALTQLIQLYHR ddPTM_HeLa_A486_30min_R1 2 NGTSIIQGALTQLIQLYHR 19 0 Q8N1B4;Q8N1B4-2;A0A0G2JIG2 Q8N1B4 VPS52 Vacuolar protein sorting-associated protein 52 homolog 0 0 ; ; 211.13 4.42E-24 11848500 17183.1 17470.3 10780.6 7001 16256.3 17095.7 25614.2 18514.7 16736.5 25515.4 FALSE FALSE TRUE 15978.65342 16085.8898 14955.13703 16298.68181 14217.28327 14986.60635 19205.25624 14299.30698 18187.2333 19126.17776 0.835433698 0.841040484 0.781919797 0.852166178 0.743341584 0.78356515 1.004134568 0.747630141 0.950907888 1 14.22326097 -8.11662076 0.622418026 1.003485843 0.8124587 0.374208853 0.07398933 1.041751506 0.916071086 0.076118949 0.031236219 7.65E-09 8.11662076 -0.191027143 NGTSSTCQDS(ph)PEKTTLAAK ddPTM_HeLa_A486_30min_R1 2 NGTSSTCQDSPEKTTLAAK 19 1 Q9BX63;Q9BX63-2 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 NGTSSTCQDS(1)PEKTTLAAK;NGTSSTCQDS(1)PEKTTLAAK ; 128.07 2.25E-06 522870000 239270 152481 51409 205777 164220 266920 432170 347810 135607 542380 TRUE FALSE FALSE 222498.4086 140397.8502 71315.94158 479059.2554 143621.9963 233990.1242 324036.495 268621.2556 147361.5239 406564.5177 0.547264699 0.345327357 0.17541113 1.178310538 0.353257577 0.575530117 0.797011251 0.660710032 0.362455447 1 18.63312479 -14 0.108705793 2.253221387 0.327336742 0.18728673 0.270866641 300.2460754 2.17305512 86.28632833 3.557907918 1.00E-14 14 -1.925884645 NGVAAEVS(ph)PAKEENPR ddPTM_HeLa_A485_30min_R1 4 NGVAAEVSPAKEENPR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR ;;; 288.57 5.12E-60 5224390000 2012410 1690390 1138550 4008650 2487280 1736930 3807820 3024810 1470190 5325300 TRUE FALSE FALSE 2460063.662 1888066.406 1559747.024 4227632.399 2239637.67 1827872.969 2994248.15 2282970.605 1765243.648 3997800.715 0.61535425 0.472276269 0.390151269 1.05748953 0.560217437 0.457219631 0.748973839 0.57105663 0.441553688 1 21.93077513 -10.6138251 3.12301858 1.025214945 0.59412536 0.307724026 0.18419851 153405541.3 155779568.7 31350400.64 0.046426588 2.43E-11 10.6138251 -0.431089585 NGVAAEVS(ph)PAKEENPR ddPTM_HeLa_A486_30min_R1 4 NGVAAEVSPAKEENPR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR ;;; 270.08 4.46E-52 6426500000 3403020 2493150 1067330 2025720 2014970 3259400 4909800 4099970 2366590 6685220 TRUE FALSE FALSE 3164485.871 2295583.714 1480628.76 4715978.534 1762233.674 2857288.367 3681316.109 3166496.333 2571727.927 5011197.399 0.631482981 0.458090858 0.295464066 0.941088159 0.351659201 0.570180765 0.73461806 0.631884175 0.513196293 1 22.25672394 -14 0.211738647 3.077688275 0.509890272 0.350769774 0.176129022 164.2414081 1.638841937 145.0083252 0.363163024 1.00E-14 14 -2.567798002 NGVAAEVS(ph)PAKEENPRR ddPTM_HeLa_A485_30min_R1 6 NGVAAEVSPAKEENPRR 17 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR ;;;;; 247.64 4.20E-43 11382250000 2605920 2426520 1550080 4831190 3733800 2533690 5580390 5041470 2023470 6500960 TRUE FALSE FALSE 3185597.914 2710280.406 2123519.096 5095105.676 3362049.762 2666350.091 4388094.089 3805041.578 2429561.869 4880390.313 0.652734251 0.555340912 0.435112555 1.043995531 0.688889524 0.546339518 0.899127694 0.779659276 0.497821222 1 22.2185651 -14 0.151042433 2.038262022 0.594548293 0.208544658 0.180420372 226.9763225 2.026949715 72.00259383 0.920189483 1.00E-14 14 -1.44371373 NGVAAEVS(ph)PAKEENPRR ddPTM_HeLa_A486_30min_R1 6 NGVAAEVSPAKEENPRR 17 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR;NGVAAEVS(1)PAKEENPRR ;;;;; 245.92 5.70E-43 11325930000 3753100 2740300 1179750 2510240 2694370 3689760 5552910 4862300 2352720 7005030 TRUE FALSE FALSE 3490027.071 2523148.648 1636580.795 5843965.581 2356416.991 3234554.926 4163513.185 3755260.433 2556655.664 5250924.893 0.66464997 0.48051509 0.311674767 1.112940234 0.448762273 0.61599718 0.792910443 0.715161711 0.486896255 1 22.32414013 -14 0.200001063 2.632226292 0.570839535 0.211569455 0.21226414 226.6258848 2.242110924 148.5543183 0.507850154 1.00E-14 14 -2.061386757 NGYGFVEFEDS(ph)RDADDAVYELNGK ddPTM_HeLa_A485_30min_R1 4 NGYGFVEFEDSRDADDAVYELNGK 24 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK ;;; 331.03 5.70E-123 1049447000 509034.6 438322 369941.1 807140.2 719289.4 446186.8 796726.1 618494.2 430982.8 1044219 TRUE FALSE FALSE 622267.5906 489579.945 506797.7074 851232.2253 647674.4218 469548.4509 626499.0601 466807.5277 517477.0948 783914.4207 0.79379531 0.624532388 0.646496217 1.08587392 0.82620552 0.598979223 0.799193182 0.595482766 0.660119372 1 19.58033664 -6.203264892 24.9971201 0.709748992 0.79375627 0.031029487 0.160232235 899.4486355 386485.1723 0.054075456 0.054075427 6.26E-07 6.203264892 0.084007278 NGYGFVEFEDS(ph)RDADDAVYELNGK ddPTM_HeLa_A486_30min_R1 6 NGYGFVEFEDSRDADDAVYELNGK 24 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK;NGYGFVEFEDS(1)RDADDAVYELNGK ;;;;; 355.58 3.49E-142 2582363000 1335969 1122399 644958 686523 1093148 1333697 1749660 1572090 1061261 1896840 TRUE FALSE FALSE 1242324.472 1033456.016 894703.0102 1598260.239 956035.1846 1169159.024 1311876.562 1214159.425 1153251.958 1421858.918 0.873732588 0.72683443 0.629248795 1.124063871 0.672383999 0.822274988 0.922648897 0.85392398 0.811087474 1 20.43934689 -13.99999999 0.121058588 1.569618726 0.741756792 0.144588374 0.131057037 300.0362592 2.344569631 41.80063031 1.220427523 1.00E-14 13.99999999 -0.827861934 NHAGS(ph)PGCEESDAGK ddPTM_HeLa_A486_30min_R1 1 NHAGSPGCEESDAGK 15 0 P42575 P42575 CASP2 Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12 1 0 NHAGS(1)PGCEESDAGK 63.044 0.015874 519130000 103470 131560 105400 57088 205210 118650 196270 186810 91423 127220 TRUE FALSE FALSE 96217.28732 121134.7065 146213.7027 132903.7491 179470.6483 104012.1693 147161.1701 144277.441 99347.61925 95363.28394 1.008955264 1.270244705 1.533228478 1.393657429 1.881967995 1.090694081 1.543163826 1.51292442 1.041780601 1 16.5411463 -7.773162849 23.33954696 1.020889116 1.413915478 0.298874102 0.234564708 135.6541583 270045.3803 0.217089693 0.058245963 1.69E-08 7.773162849 0.393026362 NHEGDEDDSHVR ddPTM_HeLa_A485_30min_R1 3 NHEGDEDDSHVR 12 0 Q9UNE7;H3BS86;H3BTA3;Q9UNE7-2;H3BUD0 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 0 ;; ;; 171.73 2.34E-10 563377000 175563 264495 175528 197764 286731 219642 300485 289841 207150 310369 FALSE FALSE TRUE 214616.3837 295425.3894 240463.1115 208567.3466 258183.0549 231142.1155 236283.925 218757.0403 248723.1049 232999.7202 0.921101465 1.267921649 1.032031761 0.895139901 1.108083111 0.992027438 1.014095316 0.938872545 1.067482419 1 17.8299687 -4.984331992 24.99987901 1.00105199 1.108377849 0.12351012 0.095776648 382.3174659 610017.5826 0.023216239 0.048303881 1.04E-05 4.984331992 0.10732586 NHEGDEDDSHVR ddPTM_HeLa_A486_30min_R1 2 NHEGDEDDSHVR 12 0 Q9UNE7;H3BS86;H3BTA3;Q9UNE7-2;H3BUD0 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 0 ; ; 154.47 1.42E-07 178207000 24470 18793 17177 7381.9 19523 22056 22430 21450 20541 26268 FALSE FALSE TRUE 22754.77936 17303.77424 23828.39442 17185.43626 17074.2433 19334.95497 16817.77676 16566.30325 22321.51042 19690.32182 1.155632679 0.878795908 1.210157692 0.872785951 0.867138864 0.981952207 0.854113859 0.841342432 1.133628522 1 14.26519907 -5.292257892 24.99451081 0.924893033 1.06125557 0.239566395 0.116137346 943.5594299 765245.8139 0.031212439 0.046300138 5.10E-06 5.292257892 0.136362538 NHET(ph)DGGSAHGDDDDDGPHFEPVVPLPDK ddPTM_HeLa_A486_30min_R1 1 NHETDGGSAHGDDDDDGPHFEPVVPLPDK 29 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NHET(0.528)DGGS(0.472)AHGDDDDDGPHFEPVVPLPDK 43.801 0.020991 252660000 258740 241740 122740 46176 148970 240820 234710 225160 191910 299440 TRUE FALSE FALSE 240603.6621 222583.642 170268.2151 107500.0616 130284.7935 211110.0769 175983.0755 173895.9832 208544.9133 224458.275 1.071930461 0.99164819 0.758574016 0.478931158 0.580441035 0.940531495 0.784034696 0.774736343 0.929103252 1 17.77608776 -9.122216443 20.45597352 1 0.801137918 0.092438278 0.173422611 0 0 0.184162172 0.044665888 7.55E-10 9.122216443 -0.198862082 NHET(ph)DGGSAHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_HeLa_A486_30min_R1 2 NHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 33 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NHET(0.55)DGGS(0.45)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.545)DGGS(0.455)AHGDDDDDGPHFEPVVPLPDKIEVK ; 101.16 6.26E-05 679550000 1103940 1015110 443370 435110 847820 1422650 1551150 1554150 836250 1621720 TRUE FALSE FALSE 1026559.507 934668.9866 615054.7379 1012958.069 741478.51 1247137.907 1163035.864 1200303.972 908736.8233 1215630.756 0.844466547 0.768875731 0.505955229 0.833277756 0.609953727 1.025918356 0.956734483 0.987391908 0.747543461 1 20.21327365 -6.264218249 24.97873735 0.943555691 0.710871982 0.489984962 0.117837247 215.2188309 1934553.034 0.040019152 0.036873008 5.44E-07 6.264218249 -0.232683709 NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDK ddPTM_HeLa_A486_30min_R1 2 NHETDGGSAHGDDDDDGPHFEPVVPLPDK 29 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NHET(0.16)DGGS(0.84)AHGDDDDDGPHFEPVVPLPDK;NHET(0.253)DGGS(0.747)AHGDDDDDGPHFEPVVPLPDK ; 192.06 4.52E-21 1829100000 719440 609390 240721 109124 364403 684100 608880 578240 482770 781860 TRUE FALSE FALSE 669010.9712 561099.717 333934.6179 254046.1868 318696.1778 599702.6974 456531.7839 446587.3749 524616.8923 586077.1669 1.141506629 0.957381977 0.569779266 0.433468835 0.543778526 1.023248697 0.778961901 0.761994154 0.895132795 1 19.16073111 -8.048950171 0.88257662 1.001012842 0.753597046 0.09818695 0.211080805 1.751514619 3.060581713 0.224704779 0.078975913 8.93E-09 8.048950171 -0.247415796 NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_HeLa_A485_30min_R1 5 NHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 33 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NHET(0.004)DGGS(0.996)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.005)DGGS(0.995)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.196)DGGS(0.804)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.08)DGGS(0.92)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.185)DGGS(0.815)AHGDDDDDGPHFEPVVPLPDKIEVK ;;;; 189.02 2.46E-21 3123683000 1308019 856977 579537 1970770 1468050 1143015 2159510 1727370 1001797 3242120 TRUE FALSE FALSE 1598983.314 957193.0054 793931.8528 2078428.175 1321885.787 1202861.498 1698113.047 1303729.799 1202848.469 2433919.151 0.65695827 0.393272309 0.326194834 0.853942981 0.543109982 0.494207664 0.697686711 0.535650413 0.494202311 1 21.21484982 -11.21747814 2.270687121 2.391244718 0.553815918 0.463142244 0.143718668 7335923.755 1348432.968 52433552.36 0.036112156 6.06E-12 11.21747814 -1.8374288 NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_HeLa_A486_30min_R1 5 NHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 33 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NHETDGGS(1)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.011)DGGS(0.989)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.455)DGGS(0.545)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.051)DGGS(0.949)AHGDDDDDGPHFEPVVPLPDKIEVK;NHET(0.001)DGGS(0.999)AHGDDDDDGPHFEPVVPLPDKIEVK ;;;; 287.56 8.60E-79 17082870000 2640790 2058730 831644 756025 1778620 2918630 3409820 3389660 1767860 3781420 TRUE FALSE FALSE 2455684.258 1895588.737 1153678.829 1760064.407 1555528.895 2558559.105 2556646.971 2617908.414 1921099.528 2834527.819 0.866346854 0.668749385 0.407009175 0.620937426 0.548778842 0.902640323 0.901965736 0.92357831 0.6777494 1 21.434677 -6.266637707 24.90856823 0.877709096 0.612897833 0.4923178 0.131215363 370.8412089 1776935.967 0.04668236 0.042403742 5.41E-07 6.266637707 -0.264811263 NHIRT(ph)PASTK ddPTM_HeLa_A486_30min_R1 1 NHIRTPASTK 10 1 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 NHIRT(1)PASTK 116.51 0.00048885 31296000 65720 42953 27111 26411 43150 56217 72410 63256 43487 70603 TRUE FALSE FALSE 61113.36738 39549.24785 37609.10526 61486.14274 37737.72464 49281.51811 54292.25213 48853.98967 47256.48817 52923.54925 1.154748089 0.747290165 0.710630821 1.161791747 0.713061108 0.931183165 1.025861887 0.923104938 0.89291986 1 15.6916222 -6.513567227 24.76196617 0.957557869 0.886326147 0.03296708 0.154914206 1515.856069 4031111.731 0.056015883 0.045915397 3.07E-07 6.513567227 -0.071231722 NHKPS(ph)R ddPTM_HeLa_A485_30min_R1 1 NHKPSR 6 1 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 0 NHKPS(1)R 42.599 0.037027 33005000 48997 38651 18108 75809 66587 47044 52799 62471 46499 92596 TRUE FALSE FALSE 59896.21361 43170.89823 24806.90274 79950.25371 59957.36448 49507.1511 41518.06232 47149.8893 55830.92279 69513.5213 0.861648389 0.621043179 0.356864424 1.150139602 0.862528086 0.712194551 0.597265993 0.678283713 0.803166373 1 16.08500601 -8.080071275 5.163213499 0.999972855 0.727745339 0.147691356 0.195755116 1.035004974 62.41392232 0.195614982 0.050932487 8.32E-09 8.080071275 -0.272227516 NHKPS(ph)R ddPTM_HeLa_A486_30min_R1 2 NHKPSR 6 1 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 0 NHKPS(1)R;NHKPS(1)R ; 50.04 0.028378 214248000 279751 138027 96394 115997 82613 255150 215378 240425 287149 392380 TRUE FALSE FALSE 260141.8995 127089.2378 133720.3383 270046.8782 72250.9072 223672.1872 161488.1464 185685.4759 312039.3065 294125.494 0.884458861 0.432091881 0.454637021 0.91813489 0.245646531 0.760465147 0.549045049 0.631313775 1.060905338 1 18.16607231 -7.740692156 6.860037313 1.032639026 0.598533148 0.42149609 0.19702713 0.126051025 23.8926917 0.137614995 0.047100909 1.82E-08 7.740692156 -0.434105877 NHLLQFALES(ph)PAK ddPTM_HeLa_A485_30min_R1 1 NHLLQFALESPAK 13 0 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(1)PAK 123.02 2.55E-05 134060000 166420 117910 82360 377810 199280 102630 260000 171840 111520 512050 TRUE FALSE FALSE 203439.5549 131698.5488 112828.3913 398448.8036 179438.9835 108003.5481 204448.876 129695.9706 133901.0411 384405.3586 0.529231839 0.342603312 0.293514096 1.036532907 0.466796259 0.28096265 0.531857508 0.337393763 0.34833292 1 18.55226892 -10.43220965 3.36692866 1.006523346 0.464451066 0.369183556 0.210567 292593590.2 391081957.2 18240059.52 0.054069062 3.70E-11 10.43220965 -0.54207228 NHLLQFALES(ph)PAK ddPTM_HeLa_A486_30min_R1 2 NHLLQFALESPAK 13 0 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(1)PAK;NHLLQFALES(1)PAK ; 188.27 1.77E-17 495130000 649420 597740 237560 446250 420940 753720 988650 806540 521390 1257950 TRUE FALSE FALSE 603899.0116 550372.9055 329549.5941 1038892.552 368141.7801 660733.6897 741279.3131 622908.4486 566584.505 942951.1321 0.64043511 0.583670656 0.349487458 1.101745909 0.390414484 0.700708305 0.786126967 0.660594624 0.600863062 1 19.84682348 -14 0.211389853 2.678100478 0.599080207 0.225373653 0.197298823 223.5017083 2.229758818 159.4056387 0.402918219 1.00E-14 14 -2.079020271 NHLLQFALES(ph)PAKSPASSSSK ddPTM_HeLa_A485_30min_R1 1 NHLLQFALESPAKSPASSSSK 21 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(0.991)PAKS(0.009)PASSSSK 105.77 6.84E-05 194080000 151030 118110 81944 251830 188650 161560 285830 264130 106600 302970 TRUE FALSE FALSE 184626.1025 131921.9371 112258.4956 265586.8352 169867.3436 170019.0318 224760.0855 199351.7034 127993.6422 227445.1547 0.811739 0.580016476 0.493562924 1.167696166 0.746849691 0.747516613 0.988194652 0.876482524 0.562745082 1 17.79515918 -5.227204955 24.99986433 0.859479223 0.623597185 0.28910589 0.172938833 826.2731442 603389.2508 0.046224592 0.080058232 5.93E-06 5.227204955 -0.235882038 NHLLQFALES(ph)PAKSPASSSSK ddPTM_HeLa_A486_30min_R1 2 NHLLQFALESPAKSPASSSSK 21 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(1)PAKSPASSSSK;NHLLQFALES(1)PAKSPASSSSK ; 160.93 1.19E-13 509100000 673710 517160 205264 544300 492020 653600 1098300 942630 409910 1187740 TRUE FALSE FALSE 626486.408 476178.3581 284747.718 1267157.907 430306.2637 572965.4773 823493.7234 728013.7265 445441.3288 890322.1731 0.703662592 0.534838256 0.319825482 1.423257721 0.483315228 0.643548476 0.924939026 0.817696951 0.500314765 1 19.76396796 NHLLQFALESPAKSPASSSS(ph)K ddPTM_HeLa_A485_30min_R1 1 NHLLQFALESPAKSPASSSSK 21 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(0.002)PAKS(0.205)PAS(0.17)S(0.17)S(0.205)S(0.247)K 64.679 0.0069929 180290000 163520 113290 67819 287660 145870 129100 177550 159200 69130 206950 TRUE FALSE FALSE 199894.4599 126538.28 92908.07028 303374.1374 131346.6706 135859.4764 139614.992 120155.9504 83003.7569 155361.1736 1.286643601 0.814478142 0.598013443 1.952702405 0.845427899 0.874475091 0.898647898 0.773397546 0.534263194 1 17.24526648 -5.961952778 24.99993101 0.813014091 1.135383129 0.187197492 0.347560439 311.9487412 204972.8609 0.109904107 0.124619327 1.09E-06 5.961952778 0.322369037 NHLNTHT(ph)GTRPHK ddPTM_HeLa_A485_30min_R1 2 NHLNTHTGTRPHK 13 1 A0A2R8Y595;A0A2R8YFL0;P49711 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 NHLNT(0.001)HT(0.973)GT(0.026)RPHK;NHLNTHT(0.846)GT(0.153)RPHK ; 95.347 0.0057525 85352000 89486 68227 40222 81648 92389 60178 103572 81608 57794 115694 TRUE FALSE FALSE 109391.852 76205.55415 55101.79158 86108.2235 83190.42676 63328.82703 81442.99609 61593.51004 69392.72568 86853.61499 1.259496821 0.877402215 0.634421395 0.991417841 0.957823422 0.7291444 0.93770416 0.70916461 0.798961859 1 16.40629828 -4.270999359 4.909566146 0.837914485 1.278687879 0.510993336 0.120742563 0.125711969 9.093318219 0.029526396 0.18618153 5.36E-05 4.270999359 0.440773394 NHLNTHT(ph)GTRPHK ddPTM_HeLa_A486_30min_R1 2 NHLNTHTGTRPHK 13 1 A0A2R8Y595;A0A2R8YFL0;P49711 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 NHLNT(0.007)HT(0.989)GT(0.004)RPHK;NHLNTHT(1)GTRPHK ; 176.49 5.13E-12 88877000 108948 79877 52564 44933 74343 112305 116930 117415 77740 110291 TRUE FALSE FALSE 101311.3078 73547.25561 72918.18851 104606.2948 65018.20772 98449.95093 87672.87724 90682.16765 84478.56579 82673.41573 1.225439967 0.889611914 0.882002853 1.265295426 0.78644637 1.190829604 1.06047242 1.096872155 1.02183471 1 16.33513587 NHLS(ph)PQQGGATPQVPSPCCR ddPTM_HeLa_A485_30min_R1 4 NHLSPQQGGATPQVPSPCCR 20 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR ;;; 209.64 8.59E-27 4163300000 313151 358758 299190 432357 509939 328120 505572 475369 291821 563225 TRUE FALSE FALSE 382810.3596 400711.6273 409872.8313 455975.5681 459167.6827 345299.8558 397552.4121 358784.0074 350386.798 422823.3729 0.905367073 0.947704533 0.969371273 1.078406723 1.085956246 0.816652716 0.94023282 0.848543459 0.828683607 1 18.6896956 -6.26879584 24.98375022 0.880694632 0.997550005 0.369746975 0.071936476 637.1881298 2163989.207 0.026103966 0.023483777 5.39E-07 6.26879584 0.116855373 NHLS(ph)PQQGGATPQVPSPCCR ddPTM_HeLa_A486_30min_R1 4 NHLSPQQGGATPQVPSPCCR 20 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR ;;; 206.33 9.11E-27 4076380000 492489 497421 333052 199003 504505 500452 631807 598815 430044 710326 TRUE FALSE FALSE 457968.0643 458003.5484 462018.6538 463289.0411 441225.2786 438711.3205 473722.206 462477.8965 467320.5602 532455.7462 0.860105403 0.860172046 0.867712776 0.870098678 0.828660939 0.823939499 0.889693105 0.868575276 0.877670236 1 19.0223021 -8.855620938 0.760430424 1.003279084 0.855342864 0.850502168 0.0177865 1.454072406 0.998014317 0.031807256 0.006715647 1.39E-09 8.855620938 -0.147936221 NHS(ph)GS(ph)RT(ph)PPVALNSSR ddPTM_HeLa_A485_30min_R1 3 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 NHS(1)GS(1)RT(1)PPVALNSSR;NHS(0.999)GS(0.999)RT(0.998)PPVALNS(0.002)S(0.002)R;NHS(1)GS(1)RT(1)PPVALNSSR ;; 113.86 3.15E-05 5741700000 1407773 1843044 1470095 2197440 2258060 1694631 2634310 2471790 1515471 2902880 TRUE FALSE FALSE 1720927.247 2058571.963 2013944.316 2317480.583 2033239.618 1783359.259 2071468.148 1865579.627 1819612.129 2179245.44 0.789689503 0.944626028 0.924147542 1.063432572 0.933001662 0.818337956 0.950543757 0.85606678 0.834973471 1 21.05539726 -6.034901142 24.9039697 0.885428661 0.939430933 0.049107497 0.079583321 1482.260145 1057674.203 0.02621499 0.026228164 9.23E-07 6.034901142 0.054002271 NHS(ph)GS(ph)RT(ph)PPVALNSSR ddPTM_HeLa_A486_30min_R1 2 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 NHS(1)GS(1)RT(1)PPVALNSSR;NHS(1)GS(1)RT(1)PPVALNSSR ; 155.56 1.38E-07 1882600000 767520 709490 433130 332200 788550 758070 843080 917060 556660 1122700 TRUE FALSE FALSE 713720.8115 653267.4285 600849.5356 773378.3885 689642.7061 664547.0309 632132.4668 708265.4573 604911.737 841568.6124 0.848083924 0.776249754 0.713963813 0.918972472 0.819472941 0.789652823 0.751135983 0.84160156 0.718790753 1 19.68272137 -10.50230069 3.009773268 1.006387401 0.7983771 0.508954496 0.059652701 38644832.66 44881483.06 2044718.059 0.015073848 3.15E-11 10.50230069 -0.208010301 NHS(ph)GS(ph)RTPPVALNSSR ddPTM_HeLa_A485_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 NHS(0.63)GS(0.74)RT(0.63)PPVALNSSR 66.889 0.029524 533480000 58305 79815 68839 80834 114020 70969 115930 116620 75070 124660 TRUE FALSE FALSE 71274.7461 89148.66995 94305.41073 85249.75674 102667.7685 74684.8271 91160.60844 88018.76215 90135.86042 93584.5562 0.761607994 0.952600232 1.007702708 0.910938302 1.09705888 0.798046495 0.974098849 0.940526575 0.963148879 1 16.51398285 -4.262636069 6.356031228 0.958432218 0.757409881 0.406533264 0.072071449 0.116151516 26.94188451 0.016959103 0.101318895 5.46E-05 4.262636069 -0.201022338 NHS(ph)GSRT(ph)PPVALNSS(ph)R ddPTM_HeLa_A486_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 NHS(0.996)GS(0.231)RT(0.875)PPVALNS(0.192)S(0.706)R 164.15 3.83E-11 1839900000 163210 161910 102460 78412 164560 176890 198920 207170 133760 224330 TRUE FALSE FALSE 151769.8218 149079.6619 142135.256 182547.0987 143919.3503 155067.1103 149148.112 160001.9135 145354.4245 168156.3079 0.902552059 0.886554087 0.84525676 1.085579846 0.855866498 0.922160532 0.886961149 0.951507056 0.864400666 1 17.35944337 -5.714846232 0.008159207 1.825529848 3.73E-06 0.076572451 0.068030706 17557.39954 40.21462464 4353.988267 4643.406487 1.93E-06 5.714846232 -1.825526118 NHS(ph)GSRT(ph)PPVALNSSR ddPTM_HeLa_A485_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 NHS(0.964)GS(0.081)RT(0.955)PPVALNSSR 80.002 0.0035527 2131300000 467370 707850 646380 599980 1158300 618630 1135800 1189000 627790 1039000 TRUE FALSE FALSE 571334.8441 790626.9 885502.8601 632755.3882 1042975.585 651020.5102 893127.0514 897395.8857 753781.6946 779996.4214 0.73248393 1.013628881 1.135265286 0.811228579 1.337154321 0.834645509 1.145039935 1.150512824 0.966391222 1 19.57310798 -4.272509627 4.112028446 1.051996861 0.708770907 0.283710988 0.148994269 0.255346806 9.47895095 0.034648608 0.255284451 5.34E-05 4.272509627 -0.343225954 NHS(ph)GSRT(ph)PPVALNSSR ddPTM_HeLa_A486_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 NHS(0.619)GS(0.4)RT(0.982)PPVALNSSR 76.04 0.0051912 2125900000 1025200 896570 826600 391390 1148900 1141800 1255300 1208300 870220 1315100 TRUE FALSE FALSE 953338.7741 825522.5279 1146681.657 911175.6998 1004794.249 1000936.325 941210.6628 933196.467 945651.3703 985790.4001 0.967080603 0.837421959 1.163210412 0.924309772 1.019277778 1.015364245 0.954777671 0.946647956 0.959282389 1 19.91092141 NHS(ph)GSRTPPVALNSSR ddPTM_HeLa_A486_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NHS(0.363)GS(0.363)RT(0.274)PPVALNSSR 71.527 0.0039521 423020000 229670 155280 150980 39523 348080 205590 297140 327140 130260 191790 TRUE FALSE FALSE 213571.319 142975.0473 209443.4994 92011.54138 304420.5607 180226.3961 222792.4292 252657.3634 141551.0417 143764.5357 1.485563307 0.994508462 1.456850943 0.640015571 2.117494132 1.253622079 1.549703675 1.757438733 0.984603338 1 17.1333483 NHSDSSTSESEVSSVS(ph)PLKNKHPDEDAVEAEGHEVK ddPTM_HeLa_A486_30min_R1 1 NHSDSSTSESEVSSVSPLKNKHPDEDAVEAEGHEVK 36 2 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 NHSDSSTSESEVS(0.037)S(0.027)VS(0.936)PLKNKHPDEDAVEAEGHEVK 196.34 1.41E-22 349760000 138720 81753 32612 21944 80090 145630 213180 175420 83071 187820 TRUE FALSE FALSE 128996.4444 75274.59454 45240.23978 51086.74099 70044.36539 127663.6513 159840.1092 135480.6954 90271.66117 140788.6495 0.916241791 0.534663801 0.321334425 0.362861219 0.497514293 0.906775168 1.135319571 0.962298423 0.641185646 1 17.1031715 -6.278119568 6.076788412 0.941661215 0.505694423 0.530732762 0.188716568 0.137058153 20.79260861 0.069525381 0.063526798 5.27E-07 6.278119568 -0.435966792 NHSGGGGGGGS(ph)GGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSR ddPTM_HeLa_A485_30min_R1 1 NHSGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSR 47 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 NHS(0.01)GGGGGGGS(0.882)GGS(0.108)GGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSR 165.59 1.60E-18 70098000 0 3016.5 1845.4 0 2141.6 0 1183.8 1451 1745.4 1337.1 TRUE FALSE FALSE 0 3369.253435 2528.090254 0 1928.374784 0 930.8714592 1095.139975 2095.68577 1003.785578 0 3.356546966 2.518556064 0 1.921102303 0 0.927360863 1.091009872 2.087782309 1 9.971235407 -5.240867376 24.86042274 1.000884877 2.098185635 0.153738889 1.010335833 1242.482441 1501486.77 0.264325667 0.457142879 5.74E-06 5.240867376 1.097300758 NHSGNDERDEEDEER ddPTM_HeLa_A486_30min_R1 2 NHSGNDERDEEDEER 15 1 A0A0D9SGE8;Q8IWS0-3;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 0 0 ; ; 248.67 3.77E-41 269343000 84693 94736 59512 29721 76186 81346 97328 90543 82779 116209 FALSE FALSE TRUE 78756.45806 87228.77434 82556.64019 69191.99002 66630.04147 71310.35759 72975.50497 69928.33544 89954.35037 87109.51001 0.904108611 1.001369131 0.947733952 0.794310403 0.764899739 0.818628845 0.837744409 0.802763503 1.032658206 1 16.41054261 -5.171529638 7.27832548 0.849167684 0.957366177 0.158639372 0.086351952 0.395713516 27.96210025 0.023080489 0.040238571 6.74E-06 5.171529638 0.108198493 NHSGS(ph)RT(ph)PPVALNSSR ddPTM_HeLa_A485_30min_R1 2 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 NHS(0.064)GS(0.937)RT(1)PPVALNSSR;NHS(0.197)GS(0.812)RT(0.991)PPVALNSSR ; 92.39 0.00080481 4771400000 2233560 2711600 2223810 3253900 3962900 2363540 4022300 3628600 2238550 4796400 TRUE FALSE FALSE 2730407.716 3028698.032 3046489.859 3431652.318 3568339.761 2487291.3 3162902.746 2738680.161 2687806.452 3600745.751 0.758289506 0.841130766 0.846071917 0.95303933 0.991000201 0.690771155 0.878402132 0.760586931 0.746458272 1 21.7798643 -6.261099089 24.99994419 0.804227789 0.878268726 0.086664215 0.098515357 72.20965934 5305170.463 0.033397774 0.031422151 5.48E-07 6.261099089 0.074040937 NHSGS(ph)RT(ph)PPVALNSSR ddPTM_HeLa_A486_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 NHS(0.196)GS(0.806)RT(0.998)PPVALNSSR 77.657 0.0045223 911510000 1435500 1067900 775590 554830 1081000 2177300 1638900 1492600 1437800 2290500 TRUE FALSE FALSE 1334878.863 983275.7148 1075919.219 1291672.28 945410.9001 1908686.863 1228829.885 1152767.563 1562429.662 1716943.891 0.777473783 0.572689486 0.626647862 0.752308964 0.550635874 1.1116769 0.715707655 0.67140666 0.910006244 1 20.71141146 -6.22337891 24.99963145 0.850844464 0.655050797 0.395941206 0.136813804 665.6281842 437211.2451 0.044737082 0.044736171 5.98E-07 6.22337891 -0.195793666 NHSGS(ph)RTPPVALNSSR ddPTM_HeLa_A485_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NHS(0.033)GS(0.667)RT(0.3)PPVALNSSR 89.831 0.0005183 660920000 103000 178270 143410 96852 304320 175410 316150 373560 134490 176660 TRUE FALSE FALSE 125911.9947 199117.1258 196463.3268 102142.7795 274020.8323 184594.1964 248601.9698 281943.8243 161480.9094 132621.9132 0.949405657 1.501389333 1.481379073 0.77018026 2.066180661 1.391883075 1.87451654 2.125921859 1.217603528 1 17.01695965 -5.765733115 24.9999999 1.671031863 1.220702265 0.215891428 0.395169451 160.1984014 932745.1333 0.116536718 0.136781507 1.72E-06 5.765733115 -0.450329598 NHSGS(ph)RTPPVALNSSR ddPTM_HeLa_A486_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NHS(0.023)GS(0.488)RT(0.488)PPVALNSSR 188.86 3.67E-18 991200000 235830 193690 191740 61528 323180 245240 311910 308900 185400 269900 TRUE FALSE FALSE 219299.5348 178341.299 265986.863 143240.2935 282643.7509 214984.7822 233866.819 238570.2132 201470.6213 202315.2832 1.083949424 0.881501862 1.314714631 0.708005303 1.397045969 1.06262255 1.15595231 1.179200154 0.995825021 1 17.62624578 -5.774279617 24.99985248 1.13848554 1.011480632 0.117053085 0.178968225 519.7555942 1011956.633 0.051920181 0.05924294 1.68E-06 5.774279617 -0.127004909 NHSGSRT(ph)PPVALNSSR ddPTM_HeLa_A485_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NHS(0.245)GS(0.324)RT(0.431)PPVALNSSR 68.49 0.011369 137200000 52722 92742 73199 46281 146990 99903 168770 180720 67743 96832 TRUE FALSE FALSE 64449.82701 103587.3702 100278.3562 48809.21384 132355.1595 105133.7666 132710.9108 136398.1366 81338.39872 72693.56446 0.886596049 1.424986805 1.379466764 0.671437894 1.820727329 1.446259616 1.825621178 1.876344043 1.11892159 1 16.14954003 -5.780092546 24.98762491 1.570592261 1.135136627 0.254363721 0.344475269 318.6948677 426919.0816 0.103924538 0.118042003 1.66E-06 5.780092546 -0.435455634 NHSGSRT(ph)PPVALNSSR ddPTM_HeLa_A486_30min_R1 2 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NHS(0.135)GS(0.096)RT(0.769)PPVALNSSR;NHS(0.177)GS(0.177)RT(0.647)PPVALNSSR ; 90.884 0.0011977 605370000 283613 179221 201659 64242 407700 233498 382320 393690 186202 250153 TRUE FALSE FALSE 263733.1933 165018.8752 279746.7654 149558.6226 356562.4643 204691.3908 286659.4922 304055.3812 202342.1393 187513.0606 1.406479061 0.880039368 1.49187883 0.79759043 1.901534022 1.09161138 1.528744138 1.621515751 1.079082911 1 17.51663156 -5.735914679 24.9999435 1.395467445 1.149991882 0.101586964 0.324579799 486.2162319 476217.9487 0.088924882 0.114758137 1.84E-06 5.735914679 -0.245475563 NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR ddPTM_HeLa_A485_30min_R1 3 NHSVNEEEQEEQGEGSEDEWEQVGPR 26 0 Q14694;Q14694-3;Q14694-2;H3BNA1 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR ;; 368.7 5.43E-157 7890200000 435562 449310 450475 495291 738240 441400 661190 673545 467677 640287 TRUE FALSE FALSE 532451.2642 501852.896 617124.4483 522347.4932 664738.2335 464511.0215 519921.3551 508357.0327 561535.4841 480675.2345 1.107715201 1.04405815 1.283869865 1.086695248 1.382925905 0.966371862 1.081647894 1.0575894 1.168222209 1 18.87470295 NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR ddPTM_HeLa_A486_30min_R1 5 NHSVNEEEQEEQGEGSEDEWEQVGPR 26 0 Q14694;Q14694-3;Q14694-2;H3BNA1 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR ;;;; 425.41 7.27E-209 10653430000 637299 586376 453845 248843 678922 665014 788435 799413 548595 756689 TRUE FALSE FALSE 592627.6311 539909.4302 629585.9384 579319.0798 593765.2721 582971.334 591160.2238 617404.111 596147.6563 567209.1492 1.044813244 0.951870101 1.109971409 1.021350027 1.046818925 1.027789017 1.042226178 1.088494626 1.051019112 1 19.11352128 -4.751805951 24.99998867 1.04963167 0.998341708 0.231886715 0.036435386 267.3518933 693798.8604 0.008731898 0.02246731 1.77E-05 4.751805951 -0.051289961 NIAVCVEFRDS(ph)DESDASALK ddPTM_HeLa_A485_30min_R1 1 NIAVCVEFRDSDESDASALK 20 1 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 0 NIAVCVEFRDS(1)DESDASALK 73.036 0.0024797 521270000 214350 224400 150420 148820 257020 286290 355560 366830 195380 228370 TRUE FALSE FALSE 262031.418 250641.628 206066.6175 156949.6598 231430.1863 301279.7017 279591.7013 276864.3673 234590.9739 171441.5618 1.528400787 1.461965379 1.201964187 0.91547031 1.349907128 1.757331761 1.630828011 1.614919768 1.368343658 1 17.38735737 -6.012862246 24.93954196 1.525958699 1.265794328 0.108343142 0.246610347 1023.388545 1984323.814 0.080952845 0.084816912 9.71E-07 6.012862246 -0.260164371 NICQFLVEIGLAK ddPTM_HeLa_A485_30min_R1 1 NICQFLVEIGLAK 13 0 K7EM18;P41567 K7EM18 EIF1 Eukaryotic translation initiation factor 1 0 0 160.15 4.15E-06 1671700 3869.3 2546 2119.2 4663.7 4788 3145.3 5321.5 4038.2 1697.6 6075.1 FALSE FALSE TRUE 4730.012436 2843.732553 2903.180267 4918.466122 4311.289908 3309.983044 4184.518052 3047.825118 2038.292749 4560.689374 1.037126638 0.623531295 0.636566104 1.078447954 0.945315402 0.725763755 0.917518759 0.668281672 0.446926458 1 12.1550362 -7.2794227 22.31075528 0.668202883 0.842401307 0.098280663 0.193080049 428.1413288 531158.0191 0.104229754 0.050319874 5.26E-08 7.2794227 0.174198424 NICQFLVEIGLAK ddPTM_HeLa_A486_30min_R1 2 NICQFLVEIGLAK 13 0 K7EM18;P41567 K7EM18 EIF1 Eukaryotic translation initiation factor 1 0 0 ; ; 184.03 1.61E-09 6477500 14076.8 14948.6 9519.6 7860.1 13992.6 18946.7 22797.2 20464.9 16025.1 22046.7 FALSE FALSE TRUE 13090.08901 13764.01849 13205.84406 18298.71003 12237.51763 16609.24879 17093.09944 15805.48902 17414.16857 16526.06282 0.792087574 0.832867371 0.799091968 1.107263734 0.740498071 1.005033623 1.034311658 0.956397733 1.053739706 1 14.01245544 -4.628532236 0.390311394 1.024145775 0.653647995 0.384926419 0.096148262 4.713901654 0.703351273 0.083421959 0.798806869 2.35E-05 4.628532236 -0.37049778 NIDDASQMDLFHRDS(ph)DDDQTEEQLDESEAR ddPTM_HeLa_A485_30min_R1 3 NIDDASQMDLFHRDSDDDQTEEQLDESEAR 30 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 NIDDASQMDLFHRDS(1)DDDQTEEQLDESEAR;NIDDASQMDLFHRDS(1)DDDQTEEQLDESEAR;NIDDASQMDLFHRDS(1)DDDQTEEQLDESEAR ;; 312.68 3.64E-109 1935820000 261620 375430 356206 335550 515310 324728 424750 382400 323821 373320 TRUE FALSE FALSE 319816.4664 419333.2727 487981.4224 353880.2468 464003.927 341730.256 333998.6926 288615.8004 388808.9044 280258.1944 1.141149386 1.496239115 1.741185207 1.262693666 1.655630188 1.219340818 1.19175353 1.029821094 1.387323947 1 18.09639703 -6.428309943 6.496306257 1.16143543 1.46566205 0.381100463 0.188403421 0.260747326 15.07069228 0.065209686 0.057168673 3.73E-07 6.428309943 0.30422662 NIDDASQMDLFHRDS(ph)DDDQTEEQLDESEAR ddPTM_HeLa_A486_30min_R1 3 NIDDASQMDLFHRDSDDDQTEEQLDESEAR 30 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 NIDDASQMDLFHRDS(1)DDDQTEEQLDESEAR;NIDDAS(0.013)QMDLFHRDS(0.987)DDDQTEEQLDESEAR;NIDDASQMDLFHRDS(1)DDDQTEEQLDESEAR ;; 328.51 3.25E-127 1201330000 230808 236504 209505 100298 312835 245057 307347 260793 234993 299864 TRUE FALSE FALSE 214629.5511 217762.5617 290630.9467 233498.8128 273596.3172 214824.3589 230445.5298 201416.127 255362.3824 224776.1026 0.954859296 0.968797658 1.29297974 1.038806217 1.217194862 0.955725971 1.025222553 0.89607447 1.136074429 1 17.77812914 -6.301254475 24.96838133 0.997536829 1.095472187 0.14387716 0.111742164 1028.876016 645213.7331 0.039350341 0.034704084 5.00E-07 6.301254475 0.097935359 NIDDGTSDRPYSHALVAGIDR ddPTM_HeLa_A485_30min_R1 1 NIDDGTSDRPYSHALVAGIDR 21 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 62.611 0.010068 14839000 10487 10012 12662 13759 14351 10201 14150 12245 13192 21155 FALSE FALSE TRUE 12819.79697 11182.81631 17346.20071 14510.61933 12922.16405 10735.10859 11126.73691 9241.894551 15839.5134 15881.44783 0.807218404 0.704143377 1.092230437 0.913683657 0.813664106 0.675952766 0.700612251 0.581930228 0.997359533 1 13.95505482 -5.98094886 6.235822557 0.757685219 0.88054724 0.047261703 0.154731696 0.366214908 52.36574148 0.048986543 0.054374137 1.04E-06 5.98094886 0.122862021 NIDDGTSDRPYSHALVAGIDR ddPTM_HeLa_A486_30min_R1 1 NIDDGTSDRPYSHALVAGIDR 21 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 100.76 0.0012966 139510000 120780 145650 93865 39241 137410 130990 142580 144940 131840 125120 FALSE FALSE TRUE 112313.9457 134108.1636 130212.0418 91355.03113 120174.7565 114829.7856 106904.9759 111940.326 143267.9974 93789.13761 1.197515497 1.429890145 1.388348855 0.974047032 1.281329156 1.224339924 1.139843895 1.193531883 1.527554267 1 16.51713322 NIDDGTSDRPYSHALVAGIDRYPR ddPTM_HeLa_A485_30min_R1 4 NIDDGTSDRPYSHALVAGIDRYPR 24 2 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 ;;; ;;; 270.9 1.00E-63 2159171000 585485 898993 714737 589171 1014133 797403 1094167 1308957 660738 850497 FALSE FALSE TRUE 715724.1184 1004122.411 979147.959 621355.9199 913162.3577 839153.7881 860389.2819 987933.2434 793342.056 638483.7501 1.120974681 1.572667137 1.533551886 0.973174211 1.430204539 1.314291535 1.34755079 1.547311491 1.242540716 1 19.28429038 -8.013482537 23.69448265 0.999999979 1.358764735 0.264599555 0.180079452 477.5240341 839212.3664 0.170735235 0.044083648 9.69E-09 8.013482537 0.358764756 NIDDGTSDRPYSHALVAGIDRYPR ddPTM_HeLa_A486_30min_R1 4 NIDDGTSDRPYSHALVAGIDRYPR 24 2 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 ;;; ;;; 230.55 9.80E-39 1526014000 776255 730295 601759 200097.1 983807 668596 901531 888057 657681 920559 FALSE FALSE TRUE 721843.5331 672423.7645 834776.2005 465836.1611 860408.7524 586111.4233 675958.4084 685865.8072 714689.3186 690045.0346 1.046081773 0.974463594 1.209741624 0.67508081 1.246887825 0.849381408 0.979585932 0.993943544 1.035714023 1 19.39633099 NIDNPALADIYTEHAHQVVVAK ddPTM_HeLa_A485_30min_R1 2 NIDNPALADIYTEHAHQVVVAK 22 0 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 0 ; ; 234.51 4.30E-43 40839000 31346.5 29571 25149.5 37302 47348 34217 54403 54738 31352 57373 FALSE FALSE TRUE 38319.42078 33029.07122 34453.34661 39339.71381 42633.86687 36008.54921 42779.35462 41313.41967 37644.05882 43070.96697 0.889680996 0.766852326 0.799920434 0.913369645 0.98985163 0.836028344 0.993229491 0.959194153 0.874000782 1 15.39442809 -5.342337618 4.640422112 0.938098616 0.813709116 0.478430718 0.057330759 0.180697834 7.020094954 0.015830671 0.024162343 4.55E-06 5.342337618 -0.124389501 NIDNPALADIYTEHAHQVVVAK ddPTM_HeLa_A486_30min_R1 1 NIDNPALADIYTEHAHQVVVAK 22 0 O75083;D6RD66 O75083 WDR1 WD repeat-containing protein 1 0 0 161.66 2.97E-17 22966000 7549.7 8709.5 7001 3921.3 11020 9060 10017 10245 8515 11836 FALSE FALSE TRUE 7020.505017 8019.327501 9711.974693 9128.984572 9637.768843 7942.269315 7510.640651 7912.437147 9253.087056 8872.188561 0.791293486 0.903872528 1.094653774 1.028943931 1.086289902 0.895187164 0.846537537 0.891824728 1.04293174 1 13.11507431 -4.451213739 4.28361631 0.980060435 0.803269844 0.35725685 0.080416255 0.281768527 9.432655185 0.022730447 0.100285648 3.54E-05 4.451213739 -0.176790591 NIEDVIAQGIGK ddPTM_HeLa_A486_30min_R1 1 NIEDVIAQGIGK 12 0 P05387;H0YDD8 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 174.84 3.63E-09 0 38865 27332 21016 9407.6 32010 27837 32364 35858 28413 34393 FALSE FALSE TRUE 36140.7642 25166.11278 29153.95803 21901.36823 27995.00732 24402.75397 24266.18489 27693.91617 30875.86172 25780.76894 1.401849739 0.976158346 1.130841291 0.849523468 1.085887212 0.946548725 0.941251401 1.074208308 1.197631529 1 14.65400767 -4.25742847 24.86214643 1.019825348 1.4018499 0.579117512 0.097008851 264.6971006 1640690.121 0.023728449 0.176587737 5.53E-05 4.25742847 0.382024552 NIFLLFK ddPTM_HeLa_A485_30min_R1 1 NIFLLFK 7 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 0 0 122.78 0.0095117 4678400 6665.2 5644.2 5526.3 8108.5 8567.8 7641.6 11303 11499 8632.4 13457 FALSE FALSE TRUE 8147.850745 6304.240092 7570.708339 8551.446823 7714.759749 8041.70236 8888.021713 8678.85222 10364.8435 10102.41756 0.806524844 0.624032817 0.749395706 0.846475289 0.763654809 0.796017618 0.879791561 0.859086666 1.025976549 1 13.30241296 -7.114723334 0.597485189 1.020257235 0.729699018 0.716287797 0.059711285 0.419610182 0.307308082 0.056926487 0.03451403 7.68E-08 7.114723334 -0.290558217 NIGLGFK(ac)TPK ddPTM_HeLa_A485_30min_R1 2 NIGLGFKTPK 10 1 P62280;M0QZC5 P62280 RPS11 40S ribosomal protein S11 0 1 ; NIGLGFK(1)TPK;NIGLGFK(1)TPK 148.32 0.0018306 80713000 116418 112553 93380 169524 192607 107948 193684 183731 99783 270540 FALSE TRUE FALSE 142314.7825 125715.0943 127925.1479 178784.6669 173430.3708 113599.9904 152301.8311 138670.6842 119808.5328 203099.3569 0.700715082 0.618983222 0.629864859 0.880281797 0.853918857 0.559332103 0.749888298 0.68277264 0.589901094 1 17.63182615 -10.42239707 2.971966712 1.005770906 0.69917693 0.447852827 0.101153413 45572796.55 54414698.68 2219586.032 0.026522304 3.78E-11 10.42239707 -0.306593977 NIGLGFK(ac)TPK ddPTM_HeLa_A486_30min_R1 2 NIGLGFKTPK 10 1 P62280;M0QZC5 P62280 RPS11 40S ribosomal protein S11 0 1 ; NIGLGFK(1)TPK;NIGLGFK(1)TPK 163.38 3.74E-05 82830000 133484 130626 77348 68451 142114 148280 203209 177875 122852 206836 FALSE TRUE FALSE 124127.4609 120274.72 107299.2171 159357.3873 124288.737 129986.7212 152363.9589 137376.7455 133500.9103 155042.9193 0.800600643 0.775751131 0.692061382 1.027827572 0.801640846 0.838391858 0.982721169 0.886056236 0.861057769 1 17.24230812 -1.000000003 0.128100658 1.021778252 0.148735322 0.338352521 0.083656239 100.2178305 0.873268888 0.474141403 15.76556262 0.099999999 1.000000003 -0.87304293 NIGNGIISS(ph)PLTGK ddPTM_HeLa_A485_30min_R1 2 NIGNGIISSPLTGK 14 0 A0A075B784;Q9P275;K7EMM6;E9PEW0 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 NIGNGIIS(0.051)S(0.949)PLTGK;NIGNGIIS(0.139)S(0.859)PLT(0.003)GK ; 144.72 8.16E-06 216980000 547900 498210 380700 774830 791590 523420 884500 839110 476060 1060370 TRUE FALSE FALSE 669778.4648 556471.3256 521536.7722 817157.0009 712776.5202 550825.4618 695519.3493 633316.9568 571600.8753 796039.2737 0.841388719 0.69905009 0.655164625 1.026528499 0.895403712 0.691957646 0.873724918 0.795585064 0.718056124 1 19.60248008 -11.32570676 2.202662169 2.039357419 0.800823317 0.235625858 0.108236922 15284796.85 1700387.942 79260851.9 0.029032128 4.72E-12 11.32570676 -1.238534102 NIGRDT(ph)PTSAGPNSFNK ddPTM_HeLa_A485_30min_R1 4 NIGRDTPTSAGPNSFNK 17 1 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 NIGRDT(0.965)PT(0.028)S(0.006)AGPNSFNK;NIGRDT(0.995)PT(0.005)SAGPNSFNK;NIGRDT(0.999)PT(0.001)SAGPNSFNK;NIGRDT(0.998)PT(0.002)SAGPNSFNK ;;; 157.53 1.43E-08 8020600000 3213610 2846620 2247950 3839720 4179810 3019720 4859330 4287560 2574140 5111160 TRUE FALSE FALSE 3928466.458 3179507.447 3079560.25 4049474.181 3763653.44 3177827.87 3821094.448 3236029.187 3090746.287 3837041.876 1.02382684 0.828635066 0.802587084 1.055363562 0.980873694 0.828197339 0.995843822 0.843365617 0.80550236 1 21.87156308 -9.375181802 8.608137729 1 0.906689774 0.082224981 0.093067984 0 0 0.09070068 0.021998146 4.22E-10 9.375181802 -0.093310226 NIGRDT(ph)PTSAGPNSFNK ddPTM_HeLa_A486_30min_R1 4 NIGRDTPTSAGPNSFNK 17 1 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 NIGRDT(0.978)PT(0.022)SAGPNSFNK;NIGRDT(0.98)PT(0.02)SAGPNSFNK;NIGRDT(0.975)PT(0.025)SAGPNSFNK;NIGRDT(0.995)PT(0.005)SAGPNSFNK ;;; 241.13 2.62E-42 9284800000 5439600 4966900 2952530 2337040 5273400 5775900 7028100 6725900 4457110 7484700 TRUE FALSE FALSE 5058312.13 4573304.755 4095828.687 5440747.227 4611960.999 5063328.183 5269595.044 5194559.395 4843455.883 5610482.403 0.901582389 0.815135745 0.730031465 0.969746777 0.822025749 0.90247644 0.93924099 0.925866801 0.863286886 1 22.41969339 -7.494396329 0.183360988 1.040722663 0.78196834 0.315263287 0.063504242 3.910282831 0.743319074 0.425793701 0.410002878 3.20E-08 7.494396329 -0.258754323 NIGS(ph)DFIPR ddPTM_HeLa_A485_30min_R1 2 NIGSDFIPR 9 0 Q5T853;Q5T857;P41279-2;P41279 Q5T853 MAP3K8 Mitogen-activated protein kinase kinase kinase 8 1 0 NIGS(1)DFIPR;NIGS(1)DFIPR ; 116.24 0.00064276 102542000 196371 197545 184975 196077 269729 169277 271262 262489 156649 242316 TRUE FALSE FALSE 240053.0515 220646.1693 253404.95 206788.19 242873.8337 178140.082 213304.6577 198113.1612 188087.0174 181911.0807 1.319617533 1.21293419 1.393015472 1.136754228 1.335123912 0.979270099 1.172576497 1.089065935 1.033950305 1 17.4728739 -6.256751196 24.99756043 1.067889432 1.274168886 0.64922683 0.082194982 264.7214669 1411505.88 0.026170191 0.025356682 5.54E-07 6.256751196 0.206279454 NIGS(ph)DFIPR ddPTM_HeLa_A486_30min_R1 1 NIGSDFIPR 9 0 Q5T853;Q5T857;P41279-2;P41279 Q5T853 MAP3K8 Mitogen-activated protein kinase kinase kinase 8 1 0 NIGS(1)DFIPR 100.55 0.0018337 0 129470 151430 116650 72032 167000 140350 190750 196370 114240 147590 TRUE FALSE FALSE 120394.8216 139430.1353 161820.004 167694.1363 146053.3028 123035.044 143022.3325 151660.8377 124142.4152 110632.5034 1.088240959 1.260299922 1.462680488 1.515776388 1.320166302 1.112105758 1.292769558 1.370852445 1.122115214 1 16.75541578 -6.027046061 23.06046765 1.210523433 1.346244729 0.193838123 0.145100899 541.3474269 461571.7498 0.050101734 0.050284641 9.40E-07 6.027046061 0.135721296 NIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_HeLa_A485_30min_R1 6 NIIEATHMYDNAAEACSTTEEVFNSPR 27 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACS(0.013)T(0.011)T(0.011)EEVFNS(0.965)PR ;;;;; 269.9 3.27E-64 3000630000 424056 460805 478077 499025 728098 400080 622488 571815 462073 736086 TRUE FALSE FALSE 518385.7942 514692.1363 654937.5767 526285.4722 655606.0066 421027.5702 489488.3535 431576.4747 554806.8127 552593.3069 0.938096404 0.931412179 1.18520722 0.95239205 1.186416843 0.761912178 0.885802176 0.781001994 1.004005669 1 19.07585856 -6.269998925 24.99930725 0.872810645 1.036088087 0.30995583 0.112554459 742.6752946 2169076.764 0.038034868 0.034058501 5.37E-07 6.269998925 0.163277443 NIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_HeLa_A486_30min_R1 7 NIIEATHMYDNAAEACSTTEEVFNSPR 27 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 NIIEATHMYDNAAEACS(0.002)T(0.002)T(0.001)EEVFNS(0.995)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR;NIIEATHMYDNAAEACSTTEEVFNS(1)PR ;;;;;; 298.4 3.19E-92 4214150000 726542 779382 727999 365253 868794 764116 921859 935872 747439 832923 TRUE FALSE FALSE 675615.1577 717620.9319 1009899.709 850327.4429 759821.7553 669847.1369 691200.1278 722794.3755 812227.6143 624353.6594 1.082103304 1.149382119 1.617512277 1.361932344 1.216973335 1.072864917 1.10706507 1.157668198 1.300909512 1 19.25200394 -5.981015722 5.134608773 1.136578844 1.312969431 0.229088943 0.150451566 0.297296385 22.20448172 0.051482895 0.056817595 1.04E-06 5.981015722 0.176390587 NIIFFVRPR ddPTM_HeLa_A485_30min_R1 2 NIIFFVRPR 9 1 F5H6Y0;H3BMM5;A0A2R8YF87;Q96AX1 F5H6Y0 VPS33A Vacuolar protein sorting-associated protein 33A 0 0 ; ; 147.51 0.00010943 16695900 10443.8 9443.2 9650.4 9665.9 12309.7 9988.2 13726.8 14088.1 11200.7 13341.8 FALSE FALSE TRUE 12766.98728 10547.5001 13220.48455 10193.92364 11084.10305 10511.16671 10793.95704 10632.97139 13448.57775 10015.9348 1.274667571 1.053071961 1.319945149 1.017770567 1.106646885 1.049444402 1.077678445 1.061605492 1.342718181 1 13.29000946 -1 0.713519832 1.104571904 20.85927757 0.133649165 0.114799111 684.1346534 3.430983509 0.042873464 21608.45806 0.1 1 19.75470566 NIIGS(ph)SPVADFSAIK ddPTM_HeLa_A486_30min_R1 1 NIIGSSPVADFSAIK 15 0 B1AUU8;P42566 B1AUU8 EPS15 Epidermal growth factor receptor substrate 15 1 0 NIIGS(0.5)S(0.5)PVADFSAIK 114.69 5.50E-05 0 36863 39140 25127 19654 37229 43483 48525 48966 35837 51204 TRUE FALSE FALSE 34279.09406 36038.40385 34856.84732 45755.50526 32559.39167 38118.50956 36383.53175 37817.51072 38943.38001 38382.18512 0.893099076 0.9389357 0.908151717 1.192102667 0.848294373 0.993130262 0.947927577 0.985288112 1.014621234 1 15.22814923 NIIHGS(ph)DSVK ddPTM_HeLa_A485_30min_R1 1 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 1 0 NIIHGS(0.917)DS(0.083)VK 123.95 8.99E-05 627180000 524780 373340 348180 947310 843880 540850 1118400 1019000 427940 1331600 TRUE FALSE FALSE 641515.5005 416998.8654 476986.271 999059.1466 759860.3442 569168.0697 879444.7035 769088.6523 513823.6327 999656.6263 0.641735856 0.417142101 0.477150112 0.999402315 0.76012135 0.569363574 0.879746785 0.769352828 0.514000127 1 19.9310731 -6.677922802 0.064784591 1.428440226 1.46E-22 0.247155155 0.174619601 62.43682196 2.306825367 22.03279293 27.48943595 2.10E-07 6.677922802 -1.428440226 NIIHGS(ph)DSVK ddPTM_HeLa_A486_30min_R1 1 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 1 0 NIIHGS(0.978)DS(0.022)VK 148.52 2.44E-06 0 406560 540510 286800 258480 510450 668380 916790 849020 456440 903830 TRUE FALSE FALSE 378062.2435 497678.0191 397856.6408 601754.5029 446424.6012 585922.0712 687399.4452 655716.68 496004.5867 677505.0851 0.558021263 0.734574589 0.587237867 0.888191862 0.658924355 0.864823134 1.014604112 0.967840234 0.732104596 1 19.36987225 -5.624348246 0.628278257 0.936338111 0.585886274 0.529550849 0.110344629 0.82225263 0.651479006 0.072529032 0.16644891 2.37E-06 5.624348246 -0.350451837 NIIHGSDS(ph)VK ddPTM_HeLa_A485_30min_R1 3 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 1 0 NIIHGSDS(1)VK;NIIHGSDS(1)VK;NIIHGS(0.007)DS(0.993)VK ;; 151.74 2.40E-06 671170000 806510 744950 552090 1020780 1433010 809590 1763560 1472480 666780 1656460 TRUE FALSE FALSE 985915.3671 832065.4223 756331.0654 1076542.627 1290334.493 851978.8805 1386760.999 1111351.971 800596.6299 1243535.007 0.792832821 0.669112987 0.608210514 0.865711557 1.037634233 0.685126575 1.115176486 0.893703808 0.643807071 1 20.24601569 -5.361289424 6.153633667 0.895760583 0.688872774 0.294903468 0.143185764 0.288070414 14.81570502 0.039886621 0.059560353 4.35E-06 5.361289424 -0.206887809 NIIHGSDS(ph)VK ddPTM_HeLa_A486_30min_R1 2 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 1 0 NIIHGSDS(1)VK;NIIHGSDS(1)VK ; 160.48 6.74E-07 332990000 668780 764870 451890 132081 792570 960740 1338660 1115070 785660 931960 TRUE FALSE FALSE 621901.9756 704258.9156 626873.91 307491.243 693158.4802 842213.6669 1003713.109 861192.9028 853761.6414 698591.15 0.890223095 1.008113137 0.897340183 0.440159087 0.992223392 1.205588801 1.43676757 1.232756674 1.222119177 1 19.41408884 -6.144163866 3.741975581 1.248077078 0.820077199 0.551728909 0.172279186 0.183563592 4.600691192 0.061119152 0.061246663 7.18E-07 6.144163866 -0.427999879 NIIHGSDSVK ddPTM_HeLa_A485_30min_R1 1 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 0 135.99 0.00052338 15770000 19098 31125 27092 9637.4 47748 23811 38743 38058 23805 26414 FALSE FALSE TRUE 23346.28421 34764.798 37114.45819 10163.86676 42994.04147 25057.70714 30465.24155 28724.21583 28582.44515 19829.47591 1.177352559 1.753187938 1.871681246 0.51256356 2.168188491 1.263659577 1.536361409 1.448561523 1.441412031 1 14.27535893 -8.844357062 1.192521178 0.998735884 1.478088927 0.097990533 0.421830605 17.23719915 21.99133688 0.434717932 0.116500149 1.43E-09 8.844357062 0.479353042 NIILEEGKEILVGDVGQTVDDPYATFVK ddPTM_HeLa_A485_30min_R1 1 NIILEEGKEILVGDVGQTVDDPYATFVK 28 1 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 65.775 0.0070437 0 12933 9461.5 10691 16813 20089 12071 23709 28674 10474 25611 FALSE FALSE TRUE 15809.90123 10567.94012 14646.04579 17731.45162 18088.86862 12703.01889 18643.37847 21641.65654 12576.03573 19226.64904 0.82229104 0.549650649 0.761757588 0.922233073 0.94082274 0.660698537 0.969663431 1.125607302 0.654093998 1 14.23081972 -5.086689906 4.349337358 0.89551761 0.679185933 0.250884083 0.149500062 0.287372775 9.634946178 0.040305993 0.074616587 8.19E-06 5.086689906 -0.216331677 NIIS(ph)PPWDFR ddPTM_HeLa_A485_30min_R1 3 NIISPPWDFR 10 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 NIIS(1)PPWDFR;NIIS(1)PPWDFR;NIIS(1)PPWDFR ;; 100.72 0.00159 303806000 189842 235485 195284 209830 244423 188541 236426 232461 182670 266347 TRUE FALSE FALSE 232071.698 263022.9223 267527.678 221292.4816 220087.3879 198412.7152 185911.6537 175449.5753 219330.1935 199951.5947 1.160639396 1.315432981 1.337962213 1.106730266 1.100703339 0.99230374 0.929783301 0.877460245 1.09691645 1 17.60929126 -5.750181716 1.498733432 0.968736925 1.273150431 0.725772116 0.075195559 0.195139022 0.911941627 0.028117146 0.038974254 1.78E-06 5.750181716 0.304413505 NIIS(ph)PPWDFR ddPTM_HeLa_A486_30min_R1 4 NIISPPWDFR 10 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 NIIS(1)PPWDFR;NIIS(1)PPWDFR;NIIS(1)PPWDFR;NIIS(1)PPWDFR ;;; 129.76 8.44E-05 370485000 700719 669102 446547 238036 580667 624492 652493 651911 555442 768664 TRUE FALSE FALSE 651602.2166 616079.9207 619461.9573 554159.8377 507834.3304 547448.5264 489232.35 503485.0964 603588.1598 576185.5312 1.130889586 1.069238791 1.075108492 0.961773262 0.881372931 0.950125431 0.849088225 0.873824609 1.047558689 1 19.13617391 -5.287807215 2.745234667 0.923368871 1.096133542 0.597125402 0.058156863 0.178706793 2.676604996 0.016941835 0.029615674 5.15E-06 5.287807215 0.172764671 NIIS(ph)PPWDFREFEVEK ddPTM_HeLa_A485_30min_R1 3 NIISPPWDFREFEVEK 16 1 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 NIIS(1)PPWDFREFEVEK;NIIS(1)PPWDFREFEVEK;NIIS(1)PPWDFREFEVEK ;; 177.93 1.10E-13 251696000 117106.4 114769 111164.2 181613 263873 159901 295333 339987 137357 258488 TRUE FALSE FALSE 143156.3147 128190.2362 152288.4635 191534.0583 237600.8776 168273.1691 232232.6919 256604.6552 164923.29 194051.6987 0.737722553 0.660598372 0.784782945 0.98702593 1.224420498 0.867156383 1.19675681 1.322352017 0.849893565 1 17.56608154 -5.275474725 2.66382135 1.089602673 0.703438973 0.544809027 0.143120914 0.20019779 2.817267015 0.041491886 0.073912861 5.30E-06 5.275474725 -0.3861637 NIIS(ph)PPWDFREFEVEK ddPTM_HeLa_A486_30min_R1 2 NIISPPWDFREFEVEK 16 1 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 NIIS(1)PPWDFREFEVEK;NIIS(1)PPWDFREFEVEK ; 167.73 2.34E-12 205869000 334820 360040 252876 277790 556780 477210 735810 746800 337740 580790 TRUE FALSE FALSE 311350.847 331509.1192 350796.3595 646709.1587 486943.4606 418336.6821 551702.5554 576769.9425 367015.5751 435356.4037 0.715163127 0.761466046 0.805768231 1.485470647 1.118493851 0.960906234 1.26724346 1.324822462 0.843023261 1 18.73183742 -5.080653591 9.767480859 1.15293017 0.749498928 0.497229936 0.17664136 0.367322732 42.6630279 0.047270592 0.082075907 8.31E-06 5.080653591 -0.403431242 NILFVITK(ac)PDVYK ddPTM_HeLa_A485_30min_R1 2 NILFVITKPDVYK 13 1 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2;F8VZ58;Q9BZK3 E9PAV3 NACA;NACAP1 "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein" 0 1 ; NILFVITK(1)PDVYK;NILFVITK(1)PDVYK 132.32 0.00090255 13150100 16836.5 14560.1 17237.9 23970 24722 14249.6 25064 21122 16310.7 39672 FALSE TRUE FALSE 20581.72134 16262.77704 23614.91654 25279.4204 22260.59088 14995.68702 19708.87165 15941.79638 19584.10788 29782.50051 0.691067606 0.546051432 0.792912487 0.848801141 0.747438613 0.503506649 0.661760138 0.53527394 0.657570974 1 14.86217727 -9.821734067 4.231159237 1.000003337 0.664379216 0.468243931 0.107119659 44879543.19 107973523.2 2533.846017 0.028539614 1.51E-10 9.821734067 -0.335624121 NILFVITK(ac)PDVYK ddPTM_HeLa_A486_30min_R1 1 NILFVITKPDVYK 13 1 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2;F8VZ58;Q9BZK3 E9PAV3 NACA;NACAP1 "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein" 0 1 NILFVITK(1)PDVYK 101.93 0.013117 8405000 4290 5051.6 4222.3 2082.3 5362.9 5935.9 6982.6 6209.6 4460.5 7162.5 FALSE TRUE FALSE 3989.293154 4651.292818 5857.287637 4847.699634 4690.235075 5203.58901 5235.479626 4795.809635 4847.139731 5368.96338 0.743028565 0.866329772 1.090953173 0.902911659 0.873582989 0.969198082 0.975137891 0.893246851 0.902807374 1 12.39042785 -4.44209201 4.373214151 0.946108173 0.755768907 0.518092787 0.061589373 0.182214599 6.059433374 0.015740623 0.069856998 3.61E-05 4.44209201 -0.190339266 NILFVITKPDVYK ddPTM_HeLa_A485_30min_R1 2 NILFVITKPDVYK 13 1 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2;F8VZ58;Q9BZK3 E9PAV3 NACA;NACAP1 "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein" 0 0 ; ; 185.87 3.79E-10 234180000 568550 440600 330760 888140 852990 500130 908650 727610 456850 1301970 FALSE FALSE TRUE 695021.986 492124.3373 453121.8881 936656.8393 768063.3206 526316.0335 714509.5045 549162.5067 548535.6045 977412.84 0.711083339 0.503496902 0.463593141 0.958302164 0.785812595 0.538478739 0.731021197 0.561853174 0.561211785 1 19.89860853 -10.47316347 3.131271111 1.007876947 0.646679912 0.351507568 0.14420735 112757548 143123343.8 7808545.558 0.038982614 3.36E-11 10.47316347 -0.361197035 NILFVITKPDVYK ddPTM_HeLa_A486_30min_R1 4 NILFVITKPDVYK 13 1 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2;F8VZ58;Q9BZK3 E9PAV3 NACA;NACAP1 "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein" 0 0 ;;; ;;; 185.87 3.79E-10 362433000 934930 778350 391406 473067 1038650 934320 1319850 1115220 720229 1266500 FALSE FALSE TRUE 869396.235 716670.7113 542968.8854 1101323.883 908372.832 819053.0979 989609.5701 861308.7511 782659.0296 949360.1565 0.915770721 0.754898661 0.571931402 1.160069628 0.95682637 0.862742229 1.042396359 0.907251842 0.824406864 1 19.85659598 -5.257453575 24.99726812 0.959595693 0.748270116 0.417108373 0.11759175 352.8073326 2212650.108 0.03267881 0.05400646 5.53E-06 5.257453575 -0.211325577 NILFVITKPDVYKS(ph)PASDTYIVFGEAK ddPTM_HeLa_A486_30min_R1 1 NILFVITKPDVYKSPASDTYIVFGEAK 27 2 E9PAV3;F8W1N5;F8VZJ2;F8VNW4;F8W0W4;H0YHX9;Q13765;E9PAV3-2 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha" 1 0 NILFVIT(0.009)KPDVY(0.018)KS(0.915)PAS(0.049)DT(0.005)Y(0.005)IVFGEAK 75.654 0.0036323 67335000 35973 29783 12438 33385 28161 46522 64266 56406 23537 72781 TRUE FALSE FALSE 33451.47846 27422.88661 17254.3267 77721.96718 24628.78479 40782.58864 48185.96706 43563.58513 25577.20611 54556.16388 0.613156719 0.502654231 0.316267228 1.424623024 0.451439087 0.747534023 0.883235984 0.79850895 0.468823398 1 15.73545458 NIMTQQKDS(ph)FEMEEVQSTEGEAPHVPATYQLGLTK ddPTM_HeLa_A485_30min_R1 2 NIMTQQKDSFEMEEVQSTEGEAPHVPATYQLGLTK 35 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 NIMT(0.135)QQKDS(0.829)FEMEEVQS(0.018)T(0.018)EGEAPHVPATYQLGLTK;NIMT(0.187)QQKDS(0.81)FEMEEVQS(0.001)T(0.001)EGEAPHVPATYQLGLTK ; 115.82 2.72E-05 479410000 45758 44648 29965 93125 80125 57523 103783 130097 63931 177892 TRUE FALSE FALSE 55936.70924 49869.19521 41050.30045 98212.18295 72147.47366 60534.81533 81608.91422 98190.50677 76761.36529 133546.7983 0.418854738 0.373421122 0.307385134 0.735413984 0.540241133 0.453285411 0.611088512 0.735251672 0.574790008 1 17.02698586 -13.99998809 0.076501149 2.666602881 9.82E-07 0.692807216 0.108892288 155.5199699 0.845862924 43.80593108 4.513306158 1.00E-14 13.99998809 -2.666601899 NIMTQQKDS(ph)FEMEEVQSTEGEAPHVPATYQLGLTK ddPTM_HeLa_A486_30min_R1 2 NIMTQQKDSFEMEEVQSTEGEAPHVPATYQLGLTK 35 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 NIMT(0.03)QQKDS(0.97)FEMEEVQSTEGEAPHVPATYQLGLTK;NIMT(0.003)QQKDS(0.996)FEMEEVQSTEGEAPHVPATYQLGLTK ; 147.17 1.18E-09 331930000 66009 56722 24412 33000 47783 91887 119845 136036 54094 128629 TRUE FALSE FALSE 61382.10997 52227.14214 33864.98018 76825.66773 41789.61058 80550.91618 89858.51341 105063.5724 58782.91147 96419.46117 0.63661536 0.541665982 0.35122557 0.796785906 0.433414687 0.835421762 0.931954113 1.089651105 0.609658162 1 16.55703675 -6.399235107 4.84251646 0.911495885 0.55485199 0.537113866 0.159292588 0.177211067 6.245468674 0.055424131 0.048335577 3.99E-07 6.399235107 -0.356643895 NINMDNDLEVLTS(ph)SPTR ddPTM_HeLa_A485_30min_R1 2 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 NINMDNDLEVLT(0.039)S(0.48)S(0.48)PT(0.001)R;NINMDNDLEVLT(0.001)S(0.499)S(0.499)PT(0.001)R ; 256.13 2.00E-51 757820000 198313 254193 237616 240491 323550 216566 317700 328920 203758 296160 TRUE FALSE FALSE 242427.0427 283918.6602 325520.0464 253628.4144 291336.2259 227905.0609 249820.7996 248251.8543 244650.3616 222332.7624 1.090379304 1.276998752 1.464111914 1.140760415 1.310361203 1.025062876 1.123634668 1.116577924 1.100379265 1 17.76236103 -6.259320739 24.99436572 1.083573547 1.262761439 0.452115011 0.100496251 186.2890914 2197729.929 0.03412095 0.032566708 5.50E-07 6.259320739 0.179187891 NINMDNDLEVLTS(ph)SPTR ddPTM_HeLa_A486_30min_R1 1 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 NINMDNDLEVLT(0.093)S(0.429)S(0.429)PT(0.05)R 147.09 6.47E-08 534420000 304690 298130 220620 133570 318900 270660 345720 348930 266730 350980 TRUE FALSE FALSE 283332.8044 274505.093 306049.9724 310957.7103 278900.5884 237268.7211 259217.1993 269486.2561 289850.3712 263092.3235 1.076932997 1.043379333 1.16327975 1.181933802 1.060086378 0.901845854 0.985270858 1.024302999 1.101705923 1 18.00520963 -6.001284994 24.98880536 1.000604608 1.11532857 0.457227269 0.05844515 47.68614915 927367.2837 0.019686688 0.022036126 9.97E-07 6.001284994 0.114723962 NINMDNDLEVLTSS(ph)PTR ddPTM_HeLa_A485_30min_R1 6 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 NINMDNDLEVLT(0.003)S(0.215)S(0.758)PT(0.024)R;NINMDNDLEVLT(0.005)S(0.03)S(0.961)PT(0.003)R;NINMDNDLEVLTS(0.161)S(0.838)PT(0.001)R;NINMDNDLEVLTS(0.001)S(0.999)PTR;NINMDNDLEVLTS(0.024)S(0.97)PT(0.005)R;NINMDNDLEVLTS(0.017)S(0.982)PT(0.001)R ;;;;; 422.5 1.77E-172 2074035000 1654933 2054951 1887812 1994682 2732273 1871341 2718036 2890050 1759148 2603240 TRUE FALSE FALSE 2023067.136 2295259.644 2586192.217 2103646.427 2460238.307 1969321.521 2137305.404 2181260.706 2112192.868 1954300.177 1.035187511 1.174466272 1.323334177 1.076419299 1.258884554 1.007686303 1.093642333 1.116133914 1.080792446 1 20.89822065 -6.268282816 24.99981218 1.069033829 1.1766164 0.314312624 0.08356544 742.2301607 2711439.577 0.028829747 0.02600196 5.39E-07 6.268282816 0.107582571 NINMDNDLEVLTSS(ph)PTR ddPTM_HeLa_A486_30min_R1 6 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 NINMDNDLEVLTS(0.073)S(0.927)PTR;NINMDNDLEVLTSS(0.996)PT(0.003)R;NINMDNDLEVLTS(0.021)S(0.979)PTR;NINMDNDLEVLTS(0.013)S(0.985)PT(0.002)R;NINMDNDLEVLTS(0.006)S(0.988)PT(0.006)R;NINMDNDLEVLT(0.076)S(0.19)S(0.724)PT(0.01)R ;;;;; 464.94 1.67E-216 1824150000 2209596 2189945 1704504 918419 2571408 2205337 2542844 2588770 2027186 2533102 TRUE FALSE FALSE 2054714.731 2016405.783 2364533.597 2138125.846 2248878.031 1933264.943 1906597.536 1999363.583 2202904.115 1898796.771 1.082114085 1.061938704 1.245279975 1.126042491 1.184370052 1.018152639 1.004108267 1.052963442 1.160157921 1 20.85665407 -6.266764171 24.97423724 1.047701156 1.140694283 0.347852747 0.063574815 543.935122 2551145.464 0.022851424 0.020745723 5.41E-07 6.266764171 0.092993128 NINPSTANS(ph)PK ddPTM_HeLa_A485_30min_R1 2 NINPSTANSPK 11 0 P46937-6;P46937-7;P46937;P46937-9;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 NINPS(0.002)T(0.003)ANS(0.995)PK;NINPS(0.001)T(0.001)ANS(0.998)PK ; 99.941 0.0014035 314670000 454360 414224 342247 713080 606540 517610 823790 808000 391664 926880 TRUE FALSE FALSE 555430.8145 462663.8935 468858.4074 752033.7548 546150.7479 544711.2592 647780.5368 609836.7331 470267.3722 695825.874 0.798232482 0.664913322 0.673815713 1.080778659 0.784895717 0.782826968 0.930952069 0.876421467 0.675840594 1 19.4083668 -14 0.024441119 2.090246925 3.76E-12 0.159356472 0.124612609 4268.659184 7.862844336 483.9434207 231.3549591 1.00E-14 14 -2.090246925 NINPSTANS(ph)PK ddPTM_HeLa_A486_30min_R1 4 NINPSTANSPK 11 0 P46937-6;P46937-7;P46937;P46937-9;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 NINPSTANS(1)PK;NINPSTANS(1)PK;NINPS(0.001)T(0.002)ANS(0.997)PK;NINPS(0.002)T(0.001)ANS(0.997)PK ;;; 180.85 1.97E-10 762410000 1835290 1580170 839300 1094500 1551590 1958530 2579580 2471460 1389520 3186660 TRUE FALSE FALSE 1706645.648 1454951.574 1164299.437 2548051.313 1356975.114 1716906.481 1934141.8 1908762.51 1509964.712 2388699.594 0.71446642 0.609097761 0.487419783 1.066710657 0.568081109 0.718761993 0.809704914 0.799080183 0.632128341 1 21.187794 -14 0.155302513 2.010449114 0.633988548 0.244527826 0.152022791 194.80026 1.764048789 61.02931276 0.69442024 1.00E-14 14 -1.376460566 NINTFVET(ph)PVQK ddPTM_HeLa_A485_30min_R1 2 NINTFVETPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 NINTFVET(1)PVQK;NINT(0.001)FVET(0.999)PVQK ; 153.09 4.39E-07 109840000 344860 256120 210656 493130 428560 264600 380860 269350 303220 721320 TRUE FALSE FALSE 421572.9172 286071.0061 288586.4205 520068.4432 385891.0616 278454.0469 299486.1497 203291.4902 364073.4727 541508.1989 0.778516222 0.528285641 0.532930842 0.96040733 0.71262275 0.514219447 0.553059308 0.375417197 0.672332337 1 19.04662366 -8.032510766 23.54758483 1.000000007 0.616114105 0.348068965 0.15529099 2601.519539 1884281.632 0.158983239 0.041049296 9.28E-09 8.032510766 -0.383885902 NINTFVET(ph)PVQK ddPTM_HeLa_A486_30min_R1 2 NINTFVETPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 NINTFVET(1)PVQK;NINTFVET(1)PVQK ; 189.47 1.80E-12 199103000 614510 581900 302220 220238 449750 593370 707890 616870 562220 715150 TRUE FALSE FALSE 571436.0223 535788.1248 419247.6777 512725.1942 393338.1612 520166.0423 530768.4347 476422.1672 610953.6823 536071.7852 1.065969219 0.999470854 0.782073762 0.95644876 0.733741585 0.97032908 0.990107014 0.888728302 1.139686324 1 19.03206668 -7.752244487 24.99616466 1.069843175 0.919759216 0.253374803 0.100430316 234.2754993 636886.2323 0.070491666 0.025822 1.77E-08 7.752244487 -0.150083959 NIPGITLLNVSK ddPTM_HeLa_A485_30min_R1 1 NIPGITLLNVSK 12 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 95.273 0.018187 28834000 14767 31136 37588 14099 30326 25367 21172 24556 27257 15576 FALSE FALSE TRUE 18051.8682 34777.08435 51493.36537 14869.19267 27306.63696 26695.1769 16648.42924 18533.6025 32727.22988 11693.18986 1.543793304 2.974131506 4.403705576 1.271611327 2.335259865 2.282967884 1.423771396 1.584991155 2.798828232 1 13.51338092 -5.295613918 24.9997569 1.863303356 2.973903937 0.294447523 0.820344945 784.8239349 574121.8638 0.230626632 0.342093958 5.06E-06 5.295613918 1.110600581 NIPS(ph)PGQLDPDTR ddPTM_HeLa_A485_30min_R1 1 NIPSPGQLDPDTR 13 0 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 0 NIPS(1)PGQLDPDTR 85.837 0.0018166 0 41673 45870 40211 47535 52136 36124 46556 40621 47520 52191 TRUE FALSE FALSE 50943.01508 51234.09748 55086.72222 50131.71669 46945.15678 38015.39678 36608.93027 30658.63606 57056.82812 39180.7442 1.300205397 1.307634618 1.405964163 1.279498838 1.198169094 0.970257139 0.934360258 0.782492438 1.456246666 1 15.25785718 -6.00249422 2.534523528 1.009666305 1.330317029 0.415768059 0.163998582 0.267957151 3.464706438 0.056288949 0.061247795 9.94E-07 6.00249422 0.320650724 NIPS(ph)PGQLDPDTRIPVINLEDGTR ddPTM_HeLa_A485_30min_R1 1 NIPSPGQLDPDTRIPVINLEDGTR 24 1 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 0 NIPS(1)PGQLDPDTRIPVINLEDGTR 94.261 0.0010043 240580000 64501 116170 76402 77684 121440 82477 126080 166030 80230 101020 TRUE FALSE FALSE 78849.02492 129755.071 104666.2792 81927.68021 109349.0072 86795.36819 99141.97802 125310.8822 96331.42509 75837.57314 1.039709232 1.710960222 1.380137507 1.080304615 1.441884315 1.144490318 1.307293653 1.652358811 1.270233489 1 16.21062518 -8.021672245 23.99268502 0.999999981 1.351846208 0.193111635 0.210789867 1688.01079 1868745.574 0.198761921 0.051320107 9.51E-09 8.021672245 0.351846227 NISFNDKK ddPTM_HeLa_A485_30min_R1 1 NISFNDKK 8 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241;P35241-5;P35241-4;E7EQR4;P15311;P26038 A0A2R8Y7M3;E7EQR4;P26038 RDX;EZR;MSN Radixin;Ezrin;Moesin 0 0 71.451 0.011613 0 17487 16935 16311 31537 31046 22172 33485 32645 19222 49993 FALSE FALSE TRUE 21376.92282 18915.40094 22345.11766 33259.78645 27954.95123 23332.89164 26330.6562 24638.76256 23079.67909 37530.66515 0.569585504 0.503998553 0.595382937 0.886202957 0.744856269 0.621702055 0.701577126 0.656496826 0.614955237 1 15.19578224 NISSS(ph)PSVESLPGGR ddPTM_HeLa_A486_30min_R1 2 NISSSPSVESLPGGR 15 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 NISS(0.006)S(0.896)PS(0.098)VESLPGGR;NISS(0.006)S(0.921)PS(0.073)VESLPGGR ; 190.18 4.10E-18 429090000 676690 652450 480660 223990 754340 603870 709370 656300 484820 640630 TRUE FALSE FALSE 629257.5254 600747.4858 666784.4245 521460.0398 659723.6433 529370.6591 531878.123 506874.8169 526844.588 480212.0782 1.310374216 1.251004531 1.388520728 1.085895302 1.373817264 1.102368481 1.107590057 1.055522841 1.097108157 1 18.87331216 -6.521695149 0.705866969 1.025701627 1.302312737 0.586527634 0.085764981 0.497912414 0.517908905 0.065422904 0.051647808 3.01E-07 6.521695149 0.27661111 NITLNFGPQHPAAHGVLR ddPTM_HeLa_A486_30min_R1 2 NITLNFGPQHPAAHGVLR 18 0 O75306-2;O75306 O75306-2 NDUFS2 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial" 0 0 ; ; 116.35 1.71E-05 24623000 10803.9 13859.8 11387.5 7420.9 18939.6 14037.4 19463.1 17808.3 14374.8 19781.2 FALSE FALSE TRUE 10046.6024 12761.49897 15797.04497 17276.23023 16564.01876 12305.60831 14593.22652 13753.73884 15620.81924 14827.85877 0.677549103 0.860643413 1.065362519 1.165119692 1.117087708 0.829897863 0.984176256 0.927560686 1.053477746 1 13.85602266 -4.473722022 3.040626181 1.015496207 0.681340322 0.583698871 0.090272224 0.217021227 3.615431141 0.025959536 0.134386175 3.36E-05 4.473722022 -0.334155885 NITS(ph)SSPER ddPTM_HeLa_A485_30min_R1 1 NITSSSPER 9 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 NIT(0.038)S(0.369)S(0.369)S(0.224)PER 81.865 0.0047282 0 123580 168150 154400 162160 204220 147600 218100 211380 142370 212460 TRUE FALSE FALSE 151069.9447 187813.6798 211518.9851 171018.3902 183887.1397 155328.1078 171501.1533 159538.7236 170942.3531 159497.632 0.94716105 1.177532716 1.326157526 1.072231531 1.152914544 0.973858394 1.075258304 1.000257631 1.071754802 1 17.28317548 -6.246574028 23.82551573 1.027431459 1.144661897 0.258340439 0.093249638 609.9959091 977673.501 0.031335395 0.031192555 5.67E-07 6.246574028 0.117230437 NITSSS(ph)PER ddPTM_HeLa_A485_30min_R1 3 NITSSSPER 9 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 NIT(0.004)S(0.001)S(0.006)S(0.989)PER;NIT(0.027)S(0.009)S(0.03)S(0.934)PER;NIT(0.344)S(0.084)S(0.084)S(0.488)PER ;; 127.52 0.00027301 2220150000 2481490 3255370 3006850 2892230 4156070 2804810 3769630 3695040 2687200 3907860 TRUE FALSE FALSE 3033488.889 3636057.204 4119208.94 3050225.201 3742277.078 2951665.515 2964217.755 2788825.646 3226496.392 2933702.421 1.034013835 1.239409007 1.404099104 1.039718678 1.275615772 1.006123012 1.010401646 0.950616404 1.099803569 1 21.48429111 -6.27456115 24.39690304 1.010115725 1.203433108 0.428786516 0.106761035 543.3934164 1010311.504 0.037131232 0.032954235 5.31E-07 6.27456115 0.193317382 NITSSS(ph)PER ddPTM_HeLa_A486_30min_R1 4 NITSSSPER 9 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 NITSS(0.003)S(0.996)PER;NIT(0.005)S(0.026)S(0.061)S(0.909)PER;NIT(0.207)S(0.053)S(0.028)S(0.713)PER;NIT(0.054)S(0.013)S(0.013)S(0.92)PER ;;; 160.16 1.40E-05 3098250000 3897290 3721590 2697250 1373970 4225050 3677040 4228250 4225090 3345060 4245860 TRUE FALSE FALSE 3624110.097 3426677.655 3741697.435 3198671.597 3695104.832 3223404.19 3170297.128 3263129.24 3635012.494 3182669.02 1.138701534 1.076667927 1.175647675 1.005028037 1.161008201 1.012799059 0.996112731 1.025280737 1.142127086 1 21.6018057 -6.278055115 24.9213767 1.034397017 1.1071391 0.292987529 0.058949847 1072.673335 1608860.822 0.020143228 0.017810543 5.27E-07 6.278055115 0.072742083 NIVSLLLSMLGHDEDNTR ddPTM_HeLa_A485_30min_R1 2 NIVSLLLSMLGHDEDNTR 18 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 214.26 6.32E-29 71580000 51696 55863 63210 49206 92460 38804 74445 56961 45709 94675 FALSE FALSE TRUE 63195.59685 62395.69191 86594.00939 51893.99918 83254.35775 40835.71744 58539.21759 42991.22544 54882.37703 71074.26486 0.889148793 0.877894299 1.21835955 0.730137685 1.171371352 0.57454998 0.823634514 0.604877525 0.772183534 1 16.11703965 -6.267331391 24.99006845 0.734640551 0.971507031 0.290095108 0.172307812 574.4607715 2436480.221 0.055932525 0.050624907 5.40E-07 6.267331391 0.23686648 NIVSLLLSMLGHDEDNTR ddPTM_HeLa_A486_30min_R1 2 NIVSLLLSMLGHDEDNTR 18 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 199.41 1.11E-22 47755000 49838 48083 36903 12267.3 53258 46171 55175 52530 44589 48212 FALSE FALSE TRUE 46344.61356 44272.72796 51192.8299 28558.89436 46577.88503 40474.89145 41369.63142 40570.06572 48454.01042 36139.40139 1.282384649 1.225054269 1.416537849 0.790242595 1.288839417 1.119965741 1.144723759 1.122599273 1.340752989 1 15.14128499 NIYAFMGT(ph)PVQK ddPTM_HeLa_A485_30min_R1 2 NIYAFMGTPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 NIYAFMGT(1)PVQK;NIYAFMGT(1)PVQK ; 140.1 1.79E-05 254160000 724960 637010 498450 1029450 1099800 559620 959590 858660 611320 1593010 TRUE FALSE FALSE 886224.8509 711502.7782 682847.3972 1085686.247 990300.0504 588920.8379 754565.7574 648072.2887 734006.3166 1195901.924 0.741051447 0.594950776 0.570989463 0.907838866 0.828077981 0.49244911 0.630959565 0.541910901 0.613767987 1 20.18966765 -10.13393822 5.043968175 1.000014692 0.656857792 0.40697753 0.123843742 2.19E-05 3.76E-06 0.12834776 0.031127572 7.35E-11 10.13393822 -0.3431569 NIYAFMGT(ph)PVQK ddPTM_HeLa_A486_30min_R1 2 NIYAFMGTPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 NIYAFMGT(1)PVQK;NIYAFMGT(1)PVQK ; 196.18 1.83E-13 272400000 812180 661500 370430 282510 568920 725550 930670 809940 611080 947060 TRUE FALSE FALSE 755250.3761 609080.3309 513870.4165 657697.5573 497560.7486 636039.0179 697806.5224 625534.3429 664048.9064 709910.0117 1.063867763 0.857968363 0.723852894 0.92645201 0.700878619 0.895943158 0.982950671 0.881145966 0.935398706 1 19.43727663 -6.520723071 24.90629026 0.939894718 0.846207702 0.164014902 0.099490048 154.5153549 1785288.98 0.037444298 0.029497654 3.01E-07 6.520723071 -0.093687017 NIYS(ph)EELR ddPTM_HeLa_A485_30min_R1 2 NIYSEELR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NIYS(1)EELR;NIYS(1)EELR ; 108.53 0.0012943 217006000 84602 84477 95022 88695 103650 91691 117360 131752 94075 112945 TRUE FALSE FALSE 103421.423 94355.8503 130174.592 93540.18326 93330.24206 96491.79898 92285.07726 99439.61542 112954.9896 84789.8901 1.21973767 1.112819585 1.53526077 1.103199723 1.100723706 1.138010662 1.08839718 1.172776793 1.332175209 1 16.37160464 NIYS(ph)EELR ddPTM_HeLa_A486_30min_R1 1 NIYSEELR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NIYS(1)EELR 117.94 0.00086799 45024000 87365 88615 69643 28597 98725 87485 98237 97659 71158 87701 TRUE FALSE FALSE 81241.16465 81592.82467 96610.6347 66575.26121 86341.98993 76691.99018 73657.06355 75424.17758 77326.03273 65740.09876 1.235793164 1.241142411 1.469584569 1.012704004 1.31338394 1.166593778 1.120428246 1.147308553 1.176238463 1 16.004486 -7.605533918 0.132004665 0.854872273 1.430691271 0.337989711 0.107020522 6.997316314 0.90815802 1.824410788 1.66248424 2.48E-08 7.605533918 0.575818998 NIYSEELR ddPTM_HeLa_A485_30min_R1 2 NIYSEELR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 114.5 0.0088843 49267000 37958 48187 45210 40275 66031 41049 55030 51383 40814 56057 FALSE FALSE TRUE 46401.62615 53822.05048 61935.06035 42475.12127 59456.72179 43198.26217 43272.39095 38781.23868 49004.99543 42083.02155 1.102621067 1.278949289 1.47173511 1.00931729 1.41284346 1.026500963 1.028262452 0.921541212 1.164483766 1 15.36095067 -6.295460004 21.97239829 1.023260251 1.25479996 0.407649339 0.136714802 144.4477663 93291.26235 0.046331885 0.040866231 5.06E-07 6.295460004 0.231539708 NKAGT(ph)PVSELTK ddPTM_HeLa_A485_30min_R1 3 NKAGTPVSELTK 12 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 NKAGT(0.841)PVS(0.159)ELTK;NKAGT(0.999)PVS(0.001)ELTK;NKAGT(0.996)PVS(0.004)ELTK ;; 148.52 1.79E-07 1741040000 1916870 1829470 928130 2196200 2352100 2049030 4079020 4344850 1279980 3146640 TRUE FALSE FALSE 2343271.118 2043410.602 1271483.91 2316172.845 2117916.665 2156314.042 3207504.054 3279268.725 1536860.245 2362240.558 0.991969726 0.8650307 0.538253357 0.980498297 0.896571121 0.912825764 1.357822786 1.388202702 0.650594301 1 21.17172446 -6.547976018 21.74221681 1.132051554 0.850507362 0.206677493 0.22418059 74.26730875 64336.59133 0.085949412 0.066581081 2.83E-07 6.547976018 -0.281544192 NKAGT(ph)PVSELTK ddPTM_HeLa_A486_30min_R1 4 NKAGTPVSELTK 12 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 NKAGT(1)PVSELTK;NKAGT(0.961)PVS(0.039)ELTK;NKAGT(0.979)PVS(0.021)ELTK;NKAGT(1)PVSELTK ;;; 154.51 8.52E-08 1929860000 5077250 2845170 1284933 2030909 3005270 3595890 5678970 5315460 2340480 7213360 TRUE FALSE FALSE 4721360.994 2619708.367 1782493.469 4728058.788 2628321.014 3152265.652 4258031.64 4105245.794 2543354.691 5407087.705 0.873180028 0.484495261 0.329658694 0.874418735 0.486088105 0.582987705 0.787490766 0.759234179 0.470374225 1 22.36642033 -14 0.293265343 3.971155468 0.604288456 0.268527428 0.180408368 342.467917 3.215666468 623.5447956 0.188575846 1.00E-14 14 -3.366867012 NKAS(ph)PQSEFMPSK ddPTM_HeLa_A485_30min_R1 1 NKASPQSEFMPSK 13 1 Q9NQW6;Q9NQW6-2;H7C1K5 Q9NQW6 ANLN Actin-binding protein anillin 1 0 NKAS(0.996)PQS(0.004)EFMPSK 83.418 0.0016383 119990000 222550 138450 91032 381610 199880 165030 325970 277320 145730 442050 TRUE FALSE FALSE 272055.4797 154640.5231 124708.525 402456.388 179979.2454 173670.7156 256323.8466 209306.8352 174976.6743 331855.0703 0.819802088 0.465988128 0.375792134 1.212747443 0.542342913 0.523333018 0.772396957 0.630717605 0.527268347 1 18.34019379 -10.33719947 3.481167867 1.001715111 0.651014238 0.175110111 0.226403647 306983000.3 424705072.8 5346100.2 0.05617878 4.60E-11 10.33719947 -0.350700873 NKAS(ph)PQSEFMPSK ddPTM_HeLa_A486_30min_R1 2 NKASPQSEFMPSK 13 1 Q9NQW6;Q9NQW6-2;H7C1K5 Q9NQW6 ANLN Actin-binding protein anillin 1 0 NKAS(0.998)PQS(0.002)EFMPSK;NKAS(0.996)PQS(0.004)EFMPSK ; 78.078 0.0031143 225075000 442770 363840 158773 726420 378620 632340 836310 758190 315310 1433060 TRUE FALSE FALSE 411734.1095 335007.9933 220254.1577 1691142.471 331129.9491 554328.32 627056.3924 585566.6882 342641.3247 1074212.448 0.383289274 0.311863816 0.205037801 1.574309136 0.308253688 0.5160323 0.583735921 0.545112551 0.318969795 1 20.03484791 -11.40048169 2.068295432 4.113089904 0.537769362 0.127968155 0.36921709 11931863.91 1074502.946 173846814.2 0.093293122 3.98E-12 11.40048169 -3.575320543 NKDGETPGQILGWGPPWDS(ph)AEEEEEDDASKER ddPTM_HeLa_A485_30min_R1 1 NKDGETPGQILGWGPPWDSAEEEEEDDASKER 32 2 A0A140TA04;Q5STV6;A0A0A0MRT5;Q9UBC1-2;Q9UBC1-3;Q9UBC1 A0A140TA04 NFKBIL1 NF-kappa-B inhibitor-like protein 1 1 0 NKDGETPGQILGWGPPWDS(1)AEEEEEDDASKER 158.1 1.07E-10 92804000 33941 19767 17101 55807 37777 31376 70755 64360 20351 78293 TRUE FALSE FALSE 41491.05835 22078.5787 23427.37153 58855.5951 34015.78924 33018.79884 55637.61623 48575.60909 24435.25903 58775.99598 0.705918422 0.37563938 0.398587402 1.001354279 0.578736075 0.561773532 0.946604397 0.826453185 0.415735346 1 15.84293946 -13.99999886 0.050793449 2.309261327 1.54E-11 0.195446117 0.213160221 880.748886 3.298020023 157.2445383 34.28227913 1.00E-14 13.99999886 -2.309261327 NKDQGTYEDYVEGLR ddPTM_HeLa_A486_30min_R1 1 NKDQGTYEDYVEGLR 15 1 F8VPF3;G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2;F8VZU9;F8W180 F8VPF3;G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 0 141.55 4.83E-05 0 273710 200630 142880 132430 275020 230130 294340 290930 174840 323720 FALSE FALSE TRUE 254524.3424 184731.3481 198206.9625 308303.7326 240524.4271 201738.9004 220693.0188 224691.59 189995.272 242658.4049 1.048899759 0.761281474 0.816814742 1.270525671 0.991205836 0.831369927 0.909480217 0.925958406 0.782974206 1 17.88856731 -6.244433226 23.35826331 0.886549176 0.973044693 0.090236562 0.138763378 1028.235625 1412299.065 0.04856237 0.048407129 5.70E-07 6.244433226 0.086495517 NKDSGSDTASAIIPSTTPSVDS(ph)DDESVVK ddPTM_HeLa_A485_30min_R1 2 NKDSGSDTASAIIPSTTPSVDSDDESVVK 29 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPS(0.002)T(0.001)T(0.001)PS(0.279)VDS(0.716)DDESVVK;NKDSGSDTASAIIPSTTPS(0.019)VDS(0.976)DDES(0.005)VVK ; 174.53 7.57E-15 929100000 441560 287072 155574 670480 388250 380530 768140 633530 280873 1024810 TRUE FALSE FALSE 539783.4986 320642.5732 213127.2966 707106.6247 349594.4668 400453.9624 604020.6139 478155.7742 337241.6348 769343.7272 0.701615519 0.416774144 0.277024806 0.919103646 0.454406079 0.520513716 0.785111508 0.62151124 0.438349756 1 19.55326878 -14 0.29926696 4.519111058 0.548523038 0.324324414 0.183178823 324.7355644 3.015454603 717.0966693 0.186185046 1.00E-14 14 -3.97058802 NKDSGSDTASAIIPSTTPSVDS(ph)DDESVVK ddPTM_HeLa_A486_30min_R1 2 NKDSGSDTASAIIPSTTPSVDSDDESVVK 29 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPSTTPS(0.009)VDS(0.94)DDES(0.051)VVK;NKDSGSDTASAIIPSTTPS(0.003)VDS(0.997)DDESVVK ; 199.31 7.90E-29 802310000 634630 445060 169767 346300 405660 619060 908110 791180 419890 1203280 TRUE FALSE FALSE 590145.7142 409791.8247 235505.3289 806203.901 354778.3402 542686.6713 680891.273 611045.5853 456286.4033 901970.856 0.654284682 0.454329341 0.261100819 0.893824779 0.393336811 0.601667635 0.754892765 0.677456019 0.505877103 1 19.78272129 -14 0.159392278 2.571014856 0.461955901 0.357119571 0.172534493 145.0333797 1.329726321 71.97381355 0.732733993 1.00E-14 14 -2.109058955 NKDSGSDTASAIIPSTTPSVDS(ph)DDESVVKDK ddPTM_HeLa_A486_30min_R1 2 NKDSGSDTASAIIPSTTPSVDSDDESVVKDK 31 2 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPSTTPS(0.014)VDS(0.967)DDES(0.019)VVKDK;NKDSGSDTASAIIPSTT(0.002)PS(0.217)VDS(0.772)DDES(0.009)VVKDK ; 162.87 1.25E-14 394470000 893310 535750 164340 622810 471290 884090 1518030 1299730 512210 2038370 TRUE FALSE FALSE 830693.5821 493295.2188 227976.8492 1449933.155 412176.4136 775019.9646 1138202.838 1003809.852 556608.7752 1527948.884 0.543665819 0.322847985 0.1492045 0.948940877 0.269757986 0.507228987 0.744922065 0.656965598 0.364284945 1 20.54316485 -13.99999997 0.135942583 2.656886974 0.317513296 0.310877859 0.225548163 172.0824526 1.448792495 77.6662194 1.50176163 1.00E-14 13.99999997 -2.339373677 NKELYEINPPEISEEIIGS(ph)PIPEPR ddPTM_HeLa_A485_30min_R1 2 NKELYEINPPEISEEIIGSPIPEPR 25 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NKELYEINPPEISEEIIGS(1)PIPEPR;NKELYEINPPEISEEIIGS(1)PIPEPR ; 145.03 2.36E-09 223620000 151526 166187 119355 189708 227530 162441 244974 243131 134747 254180 TRUE FALSE FALSE 185232.4359 185621.124 163509.3813 200071.2677 204876.3143 170946.1596 192633.3036 183502.741 161789.4869 190817.6038 0.970730332 0.972767293 0.856888348 1.048494812 1.073676171 0.895861577 1.009515368 0.961665682 0.847875058 1 17.54183475 -9.544619357 9.281984091 0.999999998 0.962685093 0.026425957 0.071331967 0 0 0.0694385 0.01684131 2.85E-10 9.544619357 -0.037314904 NKELYEINPPEISEEIIGS(ph)PIPEPR ddPTM_HeLa_A486_30min_R1 3 NKELYEINPPEISEEIIGSPIPEPR 25 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NKELYEINPPEIS(0.057)EEIIGS(0.943)PIPEPR;NKELYEINPPEIS(0.039)EEIIGS(0.961)PIPEPR;NKELYEINPPEISEEIIGS(1)PIPEPR ;; 182.73 1.42E-20 598400000 431520 429174 278965 208070 452930 442910 569770 528810 356068 602480 TRUE FALSE FALSE 401272.6764 395164.6892 386987.7189 484397.4753 396119.296 388268.2674 427207.5196 408411.5068 386932.2609 451615.0865 0.888528059 0.875003296 0.856897235 1.072589224 0.877117058 0.859732721 0.945954935 0.904335393 0.856774436 1 18.78473416 NKENLQPQSSGVQGQVPIS(ph)PEPLQRPEMLK ddPTM_HeLa_A485_30min_R1 2 NKENLQPQSSGVQGQVPISPEPLQRPEMLK 30 2 Q9H467 Q9H467 CUEDC2 CUE domain-containing protein 2 1 0 NKENLQPQSSGVQGQVPIS(1)PEPLQRPEMLK;NKENLQPQSSGVQGQVPIS(1)PEPLQRPEMLK ; 132.6 9.78E-07 297370000 144180 134020 78972 178010 138750 130240 213200 198640 105130 254310 TRUE FALSE FALSE 176252.3436 149692.4732 108187.0291 187734.2356 124935.5628 137059.165 167648.0783 149923.2285 126228.6267 190915.1972 0.923197033 0.784078352 0.566675837 0.983338353 0.654403445 0.717905997 0.878128513 0.785287032 0.66117642 1 17.54257242 -10.09238029 4.88968722 1.000008334 0.771540896 0.236233711 0.122602082 1.07E-05 1.99E-06 0.114177539 0.027691111 8.08E-11 10.09238029 -0.228467437 NKENLQPQSSGVQGQVPIS(ph)PEPLQRPEMLKEETR ddPTM_HeLa_A485_30min_R1 1 NKENLQPQSSGVQGQVPISPEPLQRPEMLKEETR 34 3 Q9H467 Q9H467 CUEDC2 CUE domain-containing protein 2 1 0 NKENLQPQSSGVQGQVPIS(0.809)PEPLQRPEMLKEET(0.191)R 50.583 0.023711 548810000 108330 96392 76976 171140 230730 131120 280610 322870 112700 276240 TRUE FALSE FALSE 132427.6348 107664.2059 105452.6256 180488.9449 207757.7111 137985.2404 220655.3811 243685.6263 135317.8563 207378.4518 0.638579532 0.519167758 0.508503293 0.870336061 1.001828827 0.665378872 1.064022704 1.17507689 0.652516474 1 17.66190647 -5.326465218 4.78929602 0.928672907 0.551458577 0.529617408 0.157136266 0.163109571 7.470113365 0.04467062 0.068436944 4.72E-06 5.326465218 -0.37721433 NKENLQPQSSGVQGQVPIS(ph)PEPLQRPEMLKEETR ddPTM_HeLa_A486_30min_R1 1 NKENLQPQSSGVQGQVPISPEPLQRPEMLKEETR 34 3 Q9H467 Q9H467 CUEDC2 CUE domain-containing protein 2 1 0 NKENLQPQSSGVQGQVPIS(0.994)PEPLQRPEMLKEET(0.006)R 94.185 0.00012927 836690000 164450 118050 66464 103570 156460 175160 266450 271820 119780 221620 TRUE FALSE FALSE 152922.9042 108695.2881 92200.64077 241116.1941 136835.3279 153550.5401 199781.3918 209932.5198 130162.6268 166124.9095 0.920529647 0.654298554 0.555007922 1.451415052 0.823689405 0.924307743 1.202597445 1.263702839 0.783522635 1 17.34190889 -5.234082494 24.99992125 1.065083522 0.704380682 0.374073361 0.209941441 778.5854902 711504.6131 0.056136903 0.097202923 5.83E-06 5.234082494 -0.36070284 NKENVYT(ph)PK ddPTM_HeLa_A486_30min_R1 1 NKENVYTPK 9 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 NKENVYT(1)PK 72.891 0.015395 279640000 517950 337990 119050 282630 293670 456480 676530 595140 291750 917190 TRUE FALSE FALSE 481644.3797 311206.4415 165149.3483 657976.9233 256835.1702 400164.1387 507255.0384 459639.6138 317039.1249 687519.6541 0.700553616 0.452650975 0.240210367 0.957029984 0.37356775 0.58204029 0.737804418 0.668547599 0.461134635 1 19.39104143 -14 0.234739423 3.335709733 0.529822808 0.293667089 0.195353355 209.5105404 2.095556123 233.1559412 0.318991615 1.00E-14 14 -2.805886925 NKES(ph)SLLVSELEDTTEK ddPTM_HeLa_A485_30min_R1 1 NKESSLLVSELEDTTEK 17 1 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 NKES(0.5)S(0.5)LLVSELEDTTEK 123.99 9.91E-06 42635000 57053 48674 27410 92946 66291 49815 94668 90445 50053 135800 TRUE FALSE FALSE 69744.24302 54366.00089 37550.09963 98023.40463 59690.83528 52423.23637 74441.40843 68263.22194 60098.17799 101947.5592 0.684118811 0.533274179 0.368327598 0.961508107 0.585505291 0.51421767 0.730193141 0.669591528 0.589500901 1 16.63746771 -14 0.283496951 3.793118571 0.602639075 0.362915102 0.148229019 262.4731316 2.505383133 432.0670676 0.16763955 1.00E-14 14 -3.190479495 NKES(ph)SLLVSELEDTTEK ddPTM_HeLa_A486_30min_R1 1 NKESSLLVSELEDTTEK 17 1 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 NKES(0.499)S(0.499)LLVS(0.002)ELEDTTEK 58.814 0.013687 32657000 30135 23532 15717 18421 25359 31887 46988 40354 17642 53572 TRUE FALSE FALSE 28022.69212 21667.23862 21803.04332 42885.01895 22178.23776 27953.10614 35231.10541 31166.27512 19171.22276 40157.2225 0.69782446 0.53956019 0.542942015 1.067927916 0.552285153 0.696091622 0.877329238 0.776106343 0.477404102 1 15.29337187 -11.42663725 2.300381869 3.893496424 0.698078112 0.224325436 0.17151094 12358320.63 880499.816 187506233.1 0.04293847 3.74E-12 11.42663725 -3.195418312 NKHEAMITDLEER ddPTM_HeLa_A485_30min_R1 1 NKHEAMITDLEER 13 1 P35579 P35579 MYH9 Myosin-9 0 0 147.35 2.71E-07 243220000 330950 384200 295730 408730 500440 352110 544500 525980 317960 624250 FALSE FALSE TRUE 404568.6857 429128.8479 405132.8334 431057.8849 450614.4364 370545.9351 428163.1268 396982.5803 381771.6555 468635.9635 0.863289882 0.915697645 0.86449369 0.919813925 0.96154472 0.790690352 0.913636938 0.847102253 0.814644383 1 18.83810815 -6.24340617 24.97770254 0.866185047 0.90414026 0.059641142 0.059827488 2095.184496 2902028.53 0.018761224 0.018721587 5.71E-07 6.24340617 0.037955212 NKHEAMITDLEER ddPTM_HeLa_A486_30min_R1 1 NKHEAMITDLEER 13 1 P35579 P35579 MYH9 Myosin-9 0 0 162.87 2.91E-11 305620000 443950 366600 248470 188090 438940 401510 521180 477860 333000 494770 FALSE FALSE TRUE 412831.3976 337549.2809 344684.2383 437883.0255 383884.0522 351975.7785 390775.2515 369061.7096 361864.7081 370876.3716 1.11312402 0.910139623 0.929377724 1.180671132 1.035072821 0.949038023 1.053653674 0.995107097 0.975701705 1 18.50057883 -9.302356967 12.40034743 0.999982325 1.014079928 0.003105003 0.079756191 0 0 0.077718363 0.018849472 4.98E-10 9.302356967 0.014097604 NKKS(ph)PEIHR ddPTM_HeLa_A485_30min_R1 5 NKKSPEIHR 9 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR ;;;; 116.03 0.00029147 7823170000 3837330 1406954 845681 5817870 1247493 4114120 3130200 4255390 1639160 5886520 TRUE FALSE FALSE 4690930.82 1571485.031 1158533.594 6135685.506 1123288.217 4329528.962 2461407.199 3211748.93 1968124.377 4419118.897 1.061508171 0.355610489 0.262163934 1.38844092 0.254188277 0.979726742 0.55699049 0.72678491 0.44536579 1 22.07532732 -10.19823356 4.504294357 1.000076475 0.665183674 0.071456716 0.356385965 457883911.8 276922233.9 418839.0245 0.083629707 6.34E-11 10.19823356 -0.3348928 NKKS(ph)PEIHR ddPTM_HeLa_A486_30min_R1 5 NKKSPEIHR 9 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR;NKKS(1)PEIHR ;;;; 127.71 0.00012093 6206920000 3016410 1325980 1553870 3158790 968420 7909360 3603170 3342830 3503980 6491360 TRUE FALSE FALSE 2804975.236 1220904.516 2155570.078 7353822.756 846951.7334 6933583.58 2701618.756 2581740.582 3807707.808 4865881.204 0.576457813 0.250911287 0.442996857 1.511303389 0.174059271 1.424938935 0.555216752 0.530580274 0.782532012 1 22.21426967 -5.036998692 24.99388119 0.829807229 0.397001167 0.20456509 0.387079878 828.3225608 559559.5181 0.099452806 0.172323908 9.18E-06 5.036998692 -0.432806062 NKKS(ph)PEIHRR ddPTM_HeLa_A485_30min_R1 1 NKKSPEIHRR 10 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NKKS(1)PEIHRR 107.17 0.00085618 491250000 333700 115570 46753 415340 165670 282680 320040 338310 130220 407640 TRUE FALSE FALSE 407930.4137 129084.9062 64048.88025 438028.9725 149175.3131 297480.6877 251660.8395 255338.9421 156353.9596 306022.8501 1.333006387 0.4218146 0.209294437 1.431360346 0.487464623 0.972086521 0.822359636 0.834378681 0.5109225 1 18.22327985 -5.226432265 24.99890221 0.845500838 0.631416396 0.062285622 0.365823165 1854.905203 1324602.705 0.09629484 0.166778808 5.94E-06 5.226432265 -0.214084442 NKKS(ph)PEIHRR ddPTM_HeLa_A486_30min_R1 1 NKKSPEIHRR 10 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NKKS(1)PEIHRR 136.01 4.13E-05 545980000 491600 218790 137370 366510 174750 886420 561000 663580 529860 1341300 TRUE FALSE FALSE 457141.3786 201452.2836 190563.3429 853253.8024 152831.2255 777062.5129 420631.8663 512497.3198 575788.6914 1005429.75 0.45467262 0.200364355 0.18953422 0.848645868 0.152005872 0.772866044 0.418360275 0.509729616 0.572679187 1 19.93938085 -14 0.113318747 2.786432127 0.154129908 0.410629385 0.212470402 158.1789091 1.180127458 65.03465101 2.356431611 1.00E-14 14 -2.63230222 NKLEGDS(ph)DVDS(ph)ELEDRVDGVK ddPTM_HeLa_A485_30min_R1 2 NKLEGDSDVDSELEDRVDGVK 21 2 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 NKLEGDS(1)DVDS(1)ELEDRVDGVK;NKLEGDS(1)DVDS(1)ELEDRVDGVK ; 165.34 9.66E-14 317310000 303159 182257 106271 624550 303053 235585 525180 412380 164465 890490 TRUE FALSE FALSE 370595.6737 203570.3707 145585.0652 658667.5851 272879.9792 247919.8663 412971.0027 311243.1584 197471.6169 668507.2313 0.554362999 0.304514837 0.217776351 0.985281167 0.40819301 0.370855923 0.617750988 0.465579344 0.295391894 1 19.35058364 -11.13667328 2.434010681 2.137163734 0.47144327 0.371379073 0.207284809 37906740.42 8423981.621 238575082.3 0.051548654 7.30E-12 11.13667328 -1.665720464 NKLEGDS(ph)DVDS(ph)ELEDRVDGVK ddPTM_HeLa_A486_30min_R1 2 NKLEGDSDVDSELEDRVDGVK 21 2 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 NKLEGDS(1)DVDS(1)ELEDRVDGVK;NKLEGDS(1)DVDS(1)ELEDRVDGVK ; 151.02 4.45E-09 442230000 962950 762610 233930 853570 552180 1131970 1805810 1476090 565120 2173840 TRUE FALSE FALSE 895452.1777 702178.0062 324513.9609 1987154.097 482920.4355 992319.0504 1353977.238 1140016.53 614105.0566 1629496.315 0.549526973 0.43091721 0.199149859 1.219489777 0.296361784 0.608972872 0.830917644 0.699612831 0.376868024 1 20.63599466 -14 0.121613713 2.228477428 0.405148211 0.161529099 0.280205514 291.2374764 2.282903449 89.83497533 2.582664427 1.00E-14 14 -1.823329217 NKLEGDS(ph)DVDSELEDRVDGVK ddPTM_HeLa_A485_30min_R1 1 NKLEGDSDVDSELEDRVDGVK 21 2 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 NKLEGDS(0.999)DVDS(0.001)ELEDRVDGVK 164.62 7.06E-14 97916000 80314 67834 50558 180260 102140 80543 159460 134760 69552 265400 TRUE FALSE FALSE 98179.57222 75766.59622 69261.50809 190107.1474 91970.58296 84760.10694 125390.0683 101709.8987 83510.44843 199240.6643 0.492768746 0.38027677 0.34762737 0.954158369 0.461605482 0.425415701 0.629339742 0.510487651 0.419143596 1 17.6041526 -10.52830297 2.96417166 1.019294109 0.516805333 0.438463836 0.165153711 54031506.51 59814729.5 8377670.968 0.044693806 2.96E-11 10.52830297 -0.502488776 NKLEGDS(ph)DVDSELEDRVDGVK ddPTM_HeLa_A486_30min_R1 2 NKLEGDSDVDSELEDRVDGVK 21 2 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 NKLEGDS(0.999)DVDS(0.001)ELEDRVDGVK;NKLEGDS(1)DVDSELEDRVDGVK ; 148.85 6.75E-10 195076000 160090 133227 81485 102124 141272 174240 264900 245210 119967 306510 TRUE FALSE FALSE 148868.5177 122669.6073 113038.1742 237749.8331 123552.3485 152744.0403 198619.2182 189381.0359 130365.8362 229757.901 0.647936446 0.533908113 0.491988192 1.034784145 0.537750162 0.664804299 0.864471765 0.824263432 0.567405237 1 17.80975495 -14 0.052876016 2.130696088 0.145692624 0.266206712 0.162641076 697.4822117 2.712341351 109.917589 22.53786865 1.00E-14 14 -1.985003463 NKNSDGGS(ph)DPETQKEK ddPTM_HeLa_A485_30min_R1 4 NKNSDGGSDPETQKEK 16 2 O75554-2;O75554 O75554-2 WBP4 WW domain-binding protein 4 1 0 NKNS(0.013)DGGS(0.902)DPET(0.085)QKEK;NKNSDGGS(0.999)DPET(0.001)QKEK;NKNSDGGS(0.999)DPET(0.001)QKEK;NKNSDGGS(1)DPETQKEK ;;; 93.583 0.00038571 1014240000 614860 473914 155777 1093350 454501 686910 1545430 2040100 434756 1580280 TRUE FALSE FALSE 751633.4858 529334.1198 213405.3947 1153076.942 409249.2846 722875.5454 1215236.255 1539762.276 522007.5414 1186345.279 0.633570596 0.446188921 0.179884725 0.97195729 0.344966421 0.609329812 1.024352924 1.297903994 0.440013165 1 20.17809253 -6.675606144 4.918536271 0.964627456 0.515472463 0.34724406 0.276072301 0.22519187 9.415241674 0.105990557 0.08021623 2.11E-07 6.675606144 -0.449154993 NKNSDGGS(ph)DPETQKEK ddPTM_HeLa_A486_30min_R1 2 NKNSDGGSDPETQKEK 16 2 O75554-2;O75554 O75554-2 WBP4 WW domain-binding protein 4 1 0 NKNS(0.066)DGGS(0.91)DPET(0.024)QKEK;NKNS(0.001)DGGS(0.985)DPET(0.014)QKEK ; 61.942 0.010154 319800000 442510 120223 69590 354390 150159 450430 535540 379680 184430 842810 TRUE FALSE FALSE 411492.3341 110696.0916 96537.11168 825037.8299 131324.658 394860.5262 401542.2276 293235.1524 200416.5409 631764.8902 0.651337769 0.175217226 0.152805439 1.30592542 0.20786951 0.625011824 0.635588071 0.46415234 0.317232793 1 19.26902824 -11.02038006 2.437593316 1.554940654 0.505058558 0.173872583 0.324401422 28786258.88 9924819.939 89403503.46 0.083863901 9.54E-12 11.02038006 -1.049882095 NKNT(ph)ENR ddPTM_HeLa_A485_30min_R1 1 NKNTENR 7 1 Q8N1H7 Q8N1H7 SIX6OS1 Protein SIX6OS1 1 0 NKNT(1)ENR 71.029 0.024024 1809100000 1199500 1518100 1691700 1045900 2014600 1432500 1807500 1962200 1358600 1487600 TRUE FALSE FALSE 1466324.637 1695628.589 2317530.228 1103034.869 1814019.35 1507503.485 1421312.859 1480967.373 1631258.558 1116768.697 1.31300657 1.518334632 2.07521059 0.987702173 1.624346523 1.349879781 1.272701198 1.326118271 1.460695095 1 20.09089898 -12.45288395 0.121521711 4.85E-11 1.68582086 0.21885477 0.262949525 145.7203065 1.668572703 39.66288448 2.676189938 3.52E-13 12.45288395 1.68582086 NKPGPNIES(ph)GNEDDDASFK ddPTM_HeLa_A485_30min_R1 7 NKPGPNIESGNEDDDASFK 19 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK ;;;;;; 299.24 1.80E-79 76960500000 4855350 3184934 1865057 9162040 4987860 4311697 9435790 7591660 3113466 11860640 TRUE FALSE FALSE 5935405.857 3557384.326 2555019.196 9662539.046 4491251.145 4537450.788 7419756.383 5729793.482 3738310.068 8904000.727 0.666599885 0.399526509 0.286951818 1.08519073 0.504408219 0.509596857 0.833305905 0.643507751 0.41984611 1 23.08602228 -11.56860667 2.257814028 8.741107178 0.597332035 0.234248054 0.219981019 19753979.65 490940.4028 797222814.6 0.05699162 2.70E-12 11.56860667 -8.143775143 NKPGPNIES(ph)GNEDDDASFK ddPTM_HeLa_A486_30min_R1 7 NKPGPNIESGNEDDDASFK 19 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK ;;;;;; 313.29 7.11E-90 45717030000 3170521 2397027 811099 1951584 1875675 3373885 5029409 4215299 1952758 5842369 TRUE FALSE FALSE 2948283.85 2207077.851 1125178.255 4543386.18 1640410.352 2957649.372 3770997.673 3255567.437 2122024.636 4379401.775 0.673216115 0.503967885 0.256925104 1.037444476 0.374574071 0.675354654 0.861075979 0.743381769 0.48454669 1 22.06230238 -14 0.114379057 2.172296923 0.431407353 0.214171034 0.218027469 248.9887093 1.870080036 68.40894031 2.406273592 1.00E-14 14 -1.740889571 NKPLEQS(ph)VEDLSK ddPTM_HeLa_A485_30min_R1 3 NKPLEQSVEDLSK 13 1 O95466-2;O95466;O95466-3 O95466-2 FMNL1 Formin-like protein 1 1 0 NKPLEQS(1)VEDLSK;NKPLEQS(1)VEDLSK;NKPLEQS(1)VEDLSK ;; 159.8 3.87E-10 1513440000 1914240 1073800 631726 3839030 1462860 1182150 2453930 1561080 946400 5122960 TRUE FALSE FALSE 2340056.084 1199371.569 865427.7357 4048746.488 1317212.522 1244045.546 1929627.809 1178222.682 1136333.799 3845900.353 0.608454684 0.311857162 0.225026042 1.052743471 0.342497829 0.323473162 0.501736299 0.306358089 0.295466261 1 21.87488995 -10.74298379 4.788881069 1.032901738 0.44019209 0.345895698 0.230675107 0.07592241 0.004074704 0.209267101 0.054260295 1.81E-11 10.74298379 -0.592709648 NKPLEQS(ph)VEDLSK ddPTM_HeLa_A486_30min_R1 2 NKPLEQSVEDLSK 13 1 O95466-2;O95466;O95466-3 O95466-2 FMNL1 Formin-like protein 1 1 0 NKPLEQS(1)VEDLSK;NKPLEQS(1)VEDLSK ; 210.98 2.76E-22 693840000 1091790 851090 303211 615607 653703 1302890 1563770 1332220 876500 2228570 TRUE FALSE FALSE 1015261.159 783646.5288 420622.4195 1433164.207 571709.4742 1142152.679 1172498.206 1028902.588 952475.7257 1670521.566 0.607751004 0.46910291 0.251791074 0.85791422 0.342234118 0.683710227 0.701875528 0.615916974 0.570166674 1 20.67186718 -14 0.148169996 2.561293537 0.425190039 0.408854954 0.162905125 131.316406 1.160967513 60.16679756 0.831707575 1.00E-14 14 -2.136103498 NKPLS(ph)PIK ddPTM_HeLa_A485_30min_R1 2 NKPLSPIK 8 1 P35251-2;P35251;A0A1W2PP02;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 0 NKPLS(1)PIK;NKPLS(1)PIK ; 122.51 0.00032086 2133600000 3368000 2030380 1165760 7763800 3635200 2020520 4645600 3767700 2242210 14886500 TRUE FALSE FALSE 4117199.981 2267815.279 1597023.135 8187916.735 3273266.724 2126311.303 3653029.609 2843665.667 2692200.98 11175569.52 0.368410753 0.202926148 0.142903065 0.732662145 0.292894847 0.190264246 0.326876371 0.254453759 0.240900562 1 23.41384502 -10.7033556 2.748056693 1.106166619 0.305878124 0.639909397 0.156223406 29362773.88 25437637.02 21580049.53 0.042433546 1.98E-11 10.7033556 -0.800288495 NKPLS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 NKPLSPIK 8 1 P35251-2;P35251;A0A1W2PP02;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 0 NKPLS(1)PIK;NKPLS(1)PIK ; 75.819 0.0059985 2657700000 8504600 6152200 1787370 4113000 3701700 8481000 11941600 9077700 5524100 15705900 TRUE FALSE FALSE 7908471.458 5664677.266 2479487.531 9575271.86 3237398.269 7434700.448 8953685.375 7010905.875 6002933.436 11773040.41 0.671744187 0.481156699 0.210607239 0.813321922 0.274984045 0.63150216 0.760524475 0.595505123 0.509888119 1 23.48898361 -13.99999996 0.191192219 2.978055209 0.46547326 0.361137474 0.181683527 147.7624832 1.447295825 111.0581728 0.480117753 1.00E-14 13.99999996 -2.512581949 NKPRPPPLSPLGGPVPSALPNGPPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 NKPRPPPLSPLGGPVPSALPNGPPSPR 27 2 Q15642 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 NKPRPPPLSPLGGPVPSALPNGPPS(1)PR 81.839 0.0026369 429810000 190740 238630 170030 297010 353330 208390 403080 353050 165860 508380 TRUE FALSE FALSE 233169.455 266535.7027 232931.1725 313234.9042 318151.2246 219300.9782 316958.6651 266463.9339 199146.5806 381650.222 0.61095066 0.69837691 0.610326312 0.820738168 0.833619912 0.574612474 0.830495168 0.698188861 0.521803917 1 18.54189151 -11.0978862 2.641221013 1.551351578 0.695991028 0.435787752 0.105947939 25663893.29 12619826.39 84522098.72 0.026937159 7.98E-12 11.0978862 -0.85536055 NKPRS(ph)PVVELSK ddPTM_HeLa_A486_30min_R1 2 NKPRSPVVELSK 12 2 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 1 0 NKPRS(0.998)PVVELS(0.002)K;NKPRS(1)PVVELSK ; 168.41 7.99E-11 1564310000 1586610 1122720 521140 961790 1091700 1729670 2597800 2291100 1131550 2936200 TRUE FALSE FALSE 1475396.832 1033751.578 722939.3646 2239095.726 954768.8063 1516280.901 1947802.963 1769466.544 1229633.665 2200956.409 0.670343505 0.469682895 0.328466008 1.01732852 0.433797236 0.688919097 0.884980255 0.803953471 0.558681517 1 21.06969914 -9.179960006 0.066892013 1.715531696 3.32E-09 0.261737383 0.195286042 106.169845 2.005042045 32.33188884 19.04292039 6.61E-10 9.179960006 -1.715531693 NKQDDDLNCEPLS(ph)PHNITPEPVSK ddPTM_HeLa_A485_30min_R1 3 NKQDDDLNCEPLSPHNITPEPVSK 24 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73;F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK ;; 183.86 1.06E-20 2023110000 1161410 621000 542930 2092050 1380340 849090 1686600 1268390 879020 2924810 TRUE FALSE FALSE 1419761.648 693620.548 743782.4002 2206333.394 1242908.503 893547.0395 1326244.132 957315.3637 1055431.251 2195708.694 0.646607472 0.315898256 0.33874366 1.004838848 0.566062568 0.406951542 0.604016432 0.435993794 0.480679087 1 21.06625523 -10.50067463 2.732256208 1.020237164 0.53152588 0.355959731 0.188310225 19505314.3 20162184.45 2954019.482 0.04970577 3.16E-11 10.50067463 -0.488711284 NKQDDDLNCEPLS(ph)PHNITPEPVSK ddPTM_HeLa_A486_30min_R1 3 NKQDDDLNCEPLSPHNITPEPVSK 24 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73;F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK;NKQDDDLNCEPLS(1)PHNITPEPVSK ;; 201.39 9.56E-29 2775330000 2578950 3062020 1182000 1771610 2584700 3765220 5024650 4523080 2415050 4751180 TRUE FALSE FALSE 2398178.923 2819374.384 1639702.055 4124397.612 2260502.825 3300705.438 3767429.425 3493273.422 2624388.479 3561453.603 0.673370817 0.791635859 0.460402475 1.158065799 0.63471354 0.926786028 1.057834762 0.980856081 0.736886893 1 21.76403476 -5.255926376 24.99497953 0.920234154 0.656786347 0.398530028 0.160543677 496.5826201 2251410.164 0.042948896 0.071784642 5.55E-06 5.255926376 -0.263447808 NKQPT(ph)PVNIR ddPTM_HeLa_A485_30min_R1 2 NKQPTPVNIR 10 1 A0A087X1B7;X6R700;Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 A0A087X1B7 CHTOP Chromatin target of PRMT1 protein 1 0 NKQPT(1)PVNIR;NKQPT(1)PVNIR ; 125.61 0.00013272 257740000 336460 307530 189197 569610 506280 335710 602940 614050 274130 883490 TRUE FALSE FALSE 411304.3662 343492.9583 259188.8434 600726.352 455872.9855 353287.2565 474116.9434 463453.2747 329145.3765 663252.2024 0.620132681 0.517891923 0.390784746 0.905728394 0.687329773 0.532659002 0.714836591 0.698758742 0.496259757 1 19.33919804 -11.51459229 2.269782485 6.569337203 0.62179806 0.411550232 0.136880247 4844459.723 431602.6621 139045401.5 0.035485693 3.06E-12 11.51459229 -5.947539143 NKQPT(ph)PVNIR ddPTM_HeLa_A486_30min_R1 1 NKQPTPVNIR 10 1 A0A087X1B7;X6R700;Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 A0A087X1B7 CHTOP Chromatin target of PRMT1 protein 1 0 NKQPT(1)PVNIR 171.29 2.86E-07 297070000 512300 376700 183620 262010 400150 485530 657110 587130 328680 831110 TRUE FALSE FALSE 476390.4155 346848.9201 254722.5815 609972.5213 349959.4557 425630.2451 492694.1278 453453.316 357170.247 622994.6464 0.764678185 0.556744624 0.40886801 0.979097533 0.561737501 0.683200486 0.790848093 0.727860694 0.573311904 1 19.24886024 -14 0.25706246 3.050121236 0.645515577 0.291348244 0.150969542 247.446811 2.441733773 267.8573647 0.205084576 1.00E-14 14 -2.404605659 NKS(ph)NEDQSMGNWQIK ddPTM_HeLa_A485_30min_R1 3 NKSNEDQSMGNWQIK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK ;; 201.67 1.22E-25 2075560000 552452 346634 263180 1141380 587686 433052 864840 591236 414549 1382550 TRUE FALSE FALSE 675343.0415 387169.831 360541.2338 1203730.699 529173.9183 455725.9331 680059.8689 446234.444 497745.1818 1037905.729 0.650678595 0.373029862 0.347373778 1.159768817 0.509847767 0.439082202 0.655223157 0.429937355 0.479566851 1 19.98524398 -9.890531268 4.193656615 1.000009346 0.560229062 0.258870412 0.22309213 325190970.1 700202004.1 48221.25729 0.056559702 1.29E-10 9.890531268 -0.439780284 NKS(ph)NEDQSMGNWQIK ddPTM_HeLa_A486_30min_R1 3 NKSNEDQSMGNWQIK 15 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK;NKS(1)NEDQSMGNWQIK ;; 307.82 1.77E-69 2756780000 1245480 1016800 372027 748980 930150 1482060 2011190 1832580 962460 2212410 TRUE FALSE FALSE 1158178.284 936225.0649 516085.8176 1743663.291 813481.9137 1299218.506 1507968.99 1415341.539 1045886.808 1658408.136 0.698367464 0.564532364 0.311193491 1.051407825 0.490519732 0.783413008 0.909287019 0.853433789 0.630657065 1 20.66136767 -5.828553518 0.80875097 0.839446268 0.558690942 0.216830122 0.197375708 1.066453525 1.527700443 0.109647221 0.1711648 1.48E-06 5.828553518 -0.280755326 NKS(ph)NEDQSMGNWQIKR ddPTM_HeLa_A485_30min_R1 3 NKSNEDQSMGNWQIKR 16 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NKS(1)NEDQSMGNWQIKR;NKS(1)NEDQSMGNWQIKR;NKS(1)NEDQSMGNWQIKR ;; 185.87 3.78E-18 1060320000 456050 433100 247434 664670 663450 601880 1208360 1237480 400870 1030790 TRUE FALSE FALSE 557496.7491 483747.2775 338970.1332 700979.2391 597394.5885 633393.5061 950184.0146 933986.0897 481320.932 773833.0233 0.720435459 0.625131344 0.438040408 0.905853353 0.771994178 0.818514443 1.227892822 1.206960755 0.621995854 1 19.56166277 -5.916918287 1.203906696 1.013512064 0.614618976 0.393431254 0.189064774 0.457058559 1.397059842 0.084273691 0.104724455 1.21E-06 5.916918287 -0.398893087 NKS(ph)NEDQSMGNWQIKR ddPTM_HeLa_A486_30min_R1 4 NKSNEDQSMGNWQIKR 16 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NKS(1)NEDQSMGNWQIKR;NKS(1)NEDQSMGNWQIKR;NKS(1)NEDQSMGNWQIKR;NKS(1)NEDQSMGNWQIKR ;;; 173.21 1.05E-12 1478590000 1576832 1140387 428033 992946 1149694 1495301 2279994 2095729 797371 2839840 TRUE FALSE FALSE 1466304.22 1050018.581 593778.8407 2311628.469 1005488.658 1310825.966 1709515.386 1618577.256 866487.7603 2128725.58 0.68881787 0.493261598 0.278936302 1.085921309 0.472343015 0.615779684 0.803069875 0.760350358 0.407045308 1 21.02155855 -14 0.24079061 3.074557001 0.591849052 0.197747557 0.219861765 287.6186721 2.870403679 293.4311928 0.342798553 1.00E-14 14 -2.482707949 NKS(ph)PAAVTEPETNKFDSTGYDKDLVEALER ddPTM_HeLa_A485_30min_R1 1 NKSPAAVTEPETNKFDSTGYDKDLVEALER 30 3 B7ZBC9;B7ZBC8;O75449 B7ZBC9 KATNA1 Katanin p60 ATPase-containing subunit A1 1 0 NKS(1)PAAVTEPETNKFDSTGYDKDLVEALER 79.422 0.0017062 535120000 165420 106910 61566 289190 169310 149350 322170 303200 108580 431420 TRUE FALSE FALSE 202217.1083 119412.1945 84341.82538 304987.7174 152452.9019 157169.7351 253335.7476 228839.7246 130371.01 323874.9337 0.624367888 0.368698476 0.260414798 0.941683612 0.470715347 0.485279096 0.782202391 0.706568187 0.402535042 1 18.30507729 -14 0.154496723 2.541244465 0.439235356 0.303981581 0.19732057 168.8599228 1.525240595 80.25526617 0.933446711 1.00E-14 14 -2.102009109 NKS(ph)PAAVTEPETNKFDSTGYDKDLVEALER ddPTM_HeLa_A486_30min_R1 2 NKSPAAVTEPETNKFDSTGYDKDLVEALER 30 3 B7ZBC9;B7ZBC8;O75449 B7ZBC9 KATNA1 Katanin p60 ATPase-containing subunit A1 1 0 NKS(1)PAAVTEPETNKFDSTGYDKDLVEALER;NKS(1)PAAVTEPETNKFDSTGYDKDLVEALER ; 250.73 4.53E-51 1143600000 602430 426890 106903 344720 367200 643180 983160 880470 373530 1215730 TRUE FALSE FALSE 560202.768 393061.6817 148298.7046 802525.5812 321142.352 563830.991 737162.9692 680006.2015 405907.8812 911303.2949 0.61472703 0.431318183 0.162732545 0.880635004 0.35239898 0.618708386 0.808910681 0.746190873 0.445414697 1 19.79757176 -14 0.089681049 2.433362067 0.198783526 0.317533274 0.203838869 251.0697758 1.562568457 68.66431741 4.848936313 1.00E-14 14 -2.234578541 NKS(ph)PPADPPR ddPTM_HeLa_A485_30min_R1 2 NKSPPADPPR 10 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 NKS(1)PPADPPR;NKS(1)PPADPPR ; 53.252 0.020914 1364650000 939030 885700 687240 1386940 1334200 920460 1561100 1443170 838920 2026130 TRUE FALSE FALSE 1147913.984 989274.9104 941478.6744 1462705.02 1201362.363 968653.8623 1227558.232 1089230.295 1007283.549 1521053.079 0.754683712 0.650388158 0.618965036 0.961639696 0.789822775 0.636831072 0.807044967 0.716102751 0.662227744 1 20.53663907 -10.14726982 3.767769943 1.000157373 0.734526829 0.400768502 0.097901985 417241310.6 670011137.4 802480.3835 0.025193434 7.12E-11 10.14726982 -0.265630544 NKS(ph)PPADPPR ddPTM_HeLa_A486_30min_R1 2 NKSPPADPPR 10 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 NKS(1)PPADPPR;NKS(1)PPADPPR ; 53.252 0.020914 1621160000 1214930 1033520 523590 611690 1024600 1294480 1643880 1474660 910280 1737650 TRUE FALSE FALSE 1129769.681 951620.1112 726338.0702 1424045.233 896085.114 1134780.219 1232563.837 1138912.11 989183.8033 1302531.13 0.867364822 0.730592989 0.557635863 1.093290748 0.687956774 0.871211592 0.946283592 0.874383793 0.759431986 1 20.31288642 -5.249341556 24.94835672 0.878229641 0.719737428 0.270681511 0.128171752 1070.195479 2206973.071 0.033897799 0.05814683 5.63E-06 5.249341556 -0.158492213 NKS(ph)TESLQANVQR ddPTM_HeLa_A486_30min_R1 2 NKSTESLQANVQR 13 1 P26373;J3QSB4 P26373 RPL13 60S ribosomal protein L13 1 0 NKS(0.965)T(0.035)ESLQANVQR;NKS(0.891)T(0.109)ESLQANVQR ; 187.46 1.28E-17 652680000 283340 226160 115662 149848 221840 292930 362050 345290 194678 464350 TRUE FALSE FALSE 263479.3292 208238.2579 160449.4239 348853.7169 194014.7586 256791.2749 271461.2606 266675.0046 211552.8458 348073.7376 0.756964116 0.598259034 0.46096389 1.002240845 0.557395568 0.737749641 0.779895842 0.766145146 0.607781694 1 18.40903344 -14 0.231607732 2.619445841 0.664551516 0.281699711 0.143319043 212.8677154 2.130641002 161.9909075 0.240549037 1.00E-14 14 -1.954894325 NLAANDLS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 NLAANDLSPSR 11 0 Q96CB9-4;Q96CB9 Q96CB9-4 NSUN4 5-methylcytosine rRNA methyltransferase NSUN4 1 0 NLAANDLS(0.853)PS(0.147)R 99.669 0.0014417 108220000 163940 187640 145110 231100 241780 197490 261020 270200 168270 328670 TRUE FALSE FALSE 200407.8874 209582.8657 198792.2275 243724.4078 217707.5343 207830.271 205250.9447 203933.0263 202040.2455 246738.6177 0.812227487 0.849412498 0.805679425 0.987783794 0.882340739 0.842309457 0.831855777 0.826514423 0.818843225 1 17.91262401 NLAANDLS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 NLAANDLSPSR 11 0 Q96CB9-4;Q96CB9 Q96CB9-4 NSUN4 5-methylcytosine rRNA methyltransferase NSUN4 1 0 NLAANDLS(0.962)PS(0.038)R;NLAANDLS(0.952)PS(0.048)R ; 74.537 0.010682 159714000 339070 371220 284820 151224 454050 377620 453260 453550 423730 497810 TRUE FALSE FALSE 315302.944 341803.1752 395109.9317 352057.1144 397098.8152 331033.0838 339849.5539 350286.5659 460459.2576 373155.1358 0.844964771 0.915981431 1.058835572 0.943460456 1.064165483 0.887119195 0.910746018 0.93871565 1.233962 1 18.50941602 -7.735382891 24.99304082 1.116981042 0.949075749 0.401293659 0.083691682 187.3555959 179709.902 0.055371708 0.020914292 1.84E-08 7.735382891 -0.167905293 NLADEIESYMNLKS(ph)PLGSK ddPTM_HeLa_A485_30min_R1 1 NLADEIESYMNLKSPLGSK 19 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 NLADEIESYMNLKS(1)PLGSK 208.12 4.05E-26 132310000 114250 81627 46770 165670 136930 93714 191780 200490 82708 215550 TRUE FALSE FALSE 139664.5183 91172.56759 64072.16926 174720.1326 123296.7684 98620.72013 150804.6363 151319.5131 99306.73696 161817.3519 0.863099765 0.563428869 0.395953639 1.079736694 0.761950229 0.609457014 0.931943543 0.935125383 0.613696466 1 17.30400679 -13.99999991 0.0393316 2.211058812 0.043288523 0.132707932 0.196135069 1683.16411 4.936806741 242.8096196 74.34583985 1.00E-14 13.99999991 -2.167770289 NLADEIESYMNLKS(ph)PLGSK ddPTM_HeLa_A486_30min_R1 2 NLADEIESYMNLKSPLGSK 19 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 NLADEIESYMNLKS(0.986)PLGS(0.014)K;NLADEIESYMNLKS(0.998)PLGS(0.002)K ; 113.13 2.15E-05 259360000 118653 90457 43058 79193 94688 131831 177866 150245 85739 202340 TRUE FALSE FALSE 110336.0374 83288.85788 59731.21073 184365.3062 82811.34811 115567.0316 133362.0455 116037.4933 93170.92555 151672.747 0.727461193 0.54913529 0.393816371 1.215546694 0.545987 0.761949881 0.87927494 0.765051703 0.614289168 1 17.21060236 -14 0.038597992 2.189549516 4.19E-11 0.137831264 0.212519846 1866.723719 5.376488968 269.3364371 84.28922525 1.00E-14 14 -2.189549516 NLAMGVNLTSMSK ddPTM_HeLa_A486_30min_R1 1 NLAMGVNLTSMSK 13 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 0 150.49 6.68E-05 13537000 17285 20294 18546 11336 23012 19366 23938 19872 14291 19171 FALSE FALSE TRUE 16073.41076 18685.82953 25727.50788 26390.78089 20125.62038 16976.81982 17948.45921 15347.5794 15529.75539 14370.45682 1.118503814 1.300294748 1.7903055 1.836460819 1.400485777 1.18136953 1.248983205 1.067995235 1.080672353 1 13.8108183 -6.233798456 3.009545522 1.119085555 1.524437051 0.457513339 0.205673494 0.274651284 5.033110337 0.083311071 0.078975639 5.84E-07 6.233798456 0.405351496 NLAPHHAS(ph)PDPPAPPASASDPHR ddPTM_HeLa_A485_30min_R1 2 NLAPHHASPDPPAPPASASDPHR 23 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 NLAPHHAS(1)PDPPAPPASASDPHR;NLAPHHAS(1)PDPPAPPASASDPHR ; 93.147 0.0011667 2692200000 314200 341310 341150 401430 513690 273540 401260 339030 354960 575500 TRUE FALSE FALSE 384092.706 381223.2355 467355.5814 423359.1044 462545.2199 287862.1314 315527.523 255882.3609 426197.2161 432038.4413 0.889024377 0.882382675 1.081745365 0.97991073 1.07061126 0.666288237 0.730322797 0.592267577 0.986479849 1 18.72080016 -6.259908708 24.99974873 0.765541609 0.980836778 0.310993248 0.134634891 148.6218445 2427380.744 0.044614006 0.042391965 5.50E-07 6.259908708 0.215295169 NLAPHHAS(ph)PDPPAPPASASDPHR ddPTM_HeLa_A486_30min_R1 4 NLAPHHASPDPPAPPASASDPHR 23 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 NLAPHHAS(1)PDPPAPPASASDPHR;NLAPHHAS(0.993)PDPPAPPAS(0.003)AS(0.003)DPHR;NLAPHHAS(1)PDPPAPPASASDPHR;NLAPHHAS(1)PDPPAPPASASDPHR ;;; 156.11 3.55E-10 4016060000 1062370 1062930 864660 290610 1139980 1041490 1202470 1169890 1025640 1153030 TRUE FALSE FALSE 987903.3491 978699.5557 1199479.508 676554.7666 996993.0785 913001.5529 901599.2876 903531.5855 1114543.301 864303.783 1.143004773 1.132355978 1.387798517 0.782774274 1.153521595 1.056343349 1.043150921 1.045386591 1.289527274 1 19.72117895 -5.23424209 24.9998052 1.058771347 1.212183314 0.242096172 0.135750603 1165.684189 1071498.195 0.03574233 0.06188546 5.83E-06 5.23424209 0.153411967 NLAPHHAS(ph)PDPPAPPASASDPHREK ddPTM_HeLa_A485_30min_R1 1 NLAPHHASPDPPAPPASASDPHREK 25 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 NLAPHHAS(1)PDPPAPPASASDPHREK 94.72 0.0014852 754420000 304560 491220 274230 302090 616060 462220 806600 1011700 331960 465870 TRUE FALSE FALSE 372308.3213 548663.906 375679.0887 318592.4118 554722.9033 486421.1245 634263.3207 763578.9887 398581.3271 349737.1827 1.064537429 1.568789174 1.07417543 0.910948071 1.586113604 1.390819016 1.813542717 2.183293703 1.13965957 1 18.41591166 -5.790069877 23.85846317 1.586397462 1.17845117 0.189286885 0.351758348 188.114898 156759.1482 0.108979052 0.123599525 1.62E-06 5.790069877 -0.407946292 NLAPHHAS(ph)PDPPAPPASASDPHREK ddPTM_HeLa_A486_30min_R1 1 NLAPHHASPDPPAPPASASDPHREK 25 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 NLAPHHAS(1)PDPPAPPASASDPHREK 63.122 0.011225 821960000 171560 109370 70387 50847 146460 110050 176920 183090 75292 169800 TRUE FALSE FALSE 159534.5299 100703.1229 97642.73143 118374.3857 128089.6211 96473.14991 132652.7447 141404.4038 81818.37118 127280.9748 1.253404369 0.791187552 0.767143177 0.930024191 1.006353238 0.757954204 1.042204029 1.110962609 0.642816975 1 16.95765726 NLAPT(ph)PR ddPTM_HeLa_A486_30min_R1 1 NLAPTPR 7 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NLAPT(1)PR 87.485 0.035773 336310000 539610 508970 377060 178160 564840 469040 577190 549130 428780 586770 TRUE FALSE FALSE 501786.1255 468637.3636 523067.73 414765.4837 493992.5003 411174.6136 432770.9571 424105.0864 465946.9956 439838.9728 1.140840527 1.06547485 1.189225518 0.942993935 1.123121258 0.934829879 0.983930447 0.964228076 1.059358139 1 18.74661592 -5.26303895 24.98789566 1.001312286 1.125209753 0.500628524 0.059680301 119.2078782 1862234.468 0.015965281 0.02512967 5.46E-06 5.26303895 0.123897468 NLAS(ph)PEGTLATLGLK ddPTM_HeLa_A485_30min_R1 2 NLASPEGTLATLGLK 15 0 Q8TDJ6-2;Q8TDJ6;Q8TDJ6-3 Q8TDJ6-2 DMXL2 DmX-like protein 2 1 0 NLAS(1)PEGTLATLGLK;NLAS(0.999)PEGT(0.001)LATLGLK ; 158.17 9.76E-09 211399000 308080 327370 212839 409020 444350 313640 509020 508930 294850 578360 TRUE FALSE FALSE 376611.3331 365653.0738 291577.0031 431363.7269 400108.9538 330061.7054 400263.7187 384114.1195 354023.6905 434185.4959 0.867397314 0.842158656 0.671549386 0.993501006 0.921516167 0.760185931 0.921872615 0.884677455 0.81537429 1 18.72795201 -14 0.211884604 1.694764506 0.833973775 0.204498987 0.085953753 247.9157327 2.473947096 73.44512574 0.183229957 1.00E-14 14 -0.860790731 NLAS(ph)PEGTLATLGLK ddPTM_HeLa_A486_30min_R1 2 NLASPEGTLATLGLK 15 0 Q8TDJ6-2;Q8TDJ6;Q8TDJ6-3 Q8TDJ6-2 DMXL2 DmX-like protein 2 1 0 NLAS(0.97)PEGT(0.029)LAT(0.001)LGLK;NLAS(1)PEGTLATLGLK ; 223.06 1.19E-33 193117000 318980 295340 177557 201661 323480 374280 435190 430030 291020 462330 TRUE FALSE FALSE 296621.1492 271936.1828 246311.8255 469476.9994 282906.1221 328105.139 326300.859 332121.5565 316245.8479 346559.5587 0.855902374 0.784673733 0.710734474 1.354679124 0.816327569 0.946749644 0.941543382 0.958339045 0.912529578 1 18.40274379 NLATS(ph)ADT(ph)PPSTVPGTGK ddPTM_HeLa_A485_30min_R1 1 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-3;Q96Q15-2;Q96Q15;Q96Q15-4 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 2 0 NLAT(0.001)S(0.999)ADT(0.929)PPS(0.027)T(0.044)VPGTGK 249.26 4.59E-45 0 194740 225040 150300 261540 275780 200790 332240 349040 174900 358810 TRUE FALSE FALSE 238059.2412 251356.4704 205902.2245 275827.2679 248322.3749 211303.0539 261254.2098 263437.3927 210000.8257 269365.2704 0.883778524 0.933143571 0.764397816 1.02398972 0.921879701 0.784448023 0.969888247 0.977993163 0.779613591 1 18.03920433 -10.13658836 4.125590988 1.000024858 0.89685698 0.120347096 0.08609326 113239591.2 100447575 35524.9956 0.020808302 7.30E-11 10.13658836 -0.103167878 NLATS(ph)ADT(ph)PPSTVPGTGK ddPTM_HeLa_A486_30min_R1 1 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-3;Q96Q15-2;Q96Q15;Q96Q15-4 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 2 0 NLAT(0.005)S(0.995)ADT(0.998)PPS(0.001)T(0.001)VPGTGK 169.25 7.88E-12 106160000 203480 186740 96410 73996 186260 196400 241290 219370 152660 241620 TRUE FALSE FALSE 189217.1028 171942.0423 133742.5339 172266.4276 162897.534 172170.1648 180916.6899 169424.2398 165892.6917 181116.7793 1.044724313 0.949343528 0.738432598 0.951134556 0.899406088 0.950603061 0.998895246 0.935441986 0.915943251 1 17.46656068 -6.34750326 5.379297739 0.959303127 0.910520009 0.075189415 0.075238355 0.649998514 30.99039786 0.028024485 0.024659109 4.49E-07 6.34750326 -0.048783118 NLATSADT(ph)PPSTVPGTGK ddPTM_HeLa_A486_30min_R1 2 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-3;Q96Q15-2;Q96Q15;Q96Q15-4 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 1 0 NLATS(0.001)ADT(0.991)PPS(0.001)T(0.007)VPGTGK;NLATSADT(0.985)PPS(0.007)T(0.008)VPGTGK ; 221.91 9.58E-34 285340000 904480 768120 425740 341020 776520 843980 1046410 1020110 693430 1193040 TRUE FALSE FALSE 841080.6227 707251.3738 590597.9297 793911.7942 679121.6208 739858.3286 784587.1502 787853.2218 753537.0707 894295.0186 0.940495704 0.790847941 0.660406149 0.887751556 0.759393273 0.827309012 0.877324746 0.880976865 0.842604571 1 19.77039131 -8.406733741 0.459271535 1.009604075 0.800597326 0.350485862 0.072951354 2.021789616 0.856119612 0.125754248 0.044829951 3.92E-09 8.406733741 -0.209006749 NLDIERPTYTNLNR ddPTM_HeLa_A485_30min_R1 6 NLDIERPTYTNLNR 14 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;C9JDS9;P68363;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;;;; ;;;;; 255.72 3.12E-40 4295620000 1953400 2361700 2266450 2517240 3407350 2030640 3281620 2992000 2077770 3342540 FALSE FALSE TRUE 2387927.091 2637880.271 3104904.17 2654750.447 3068102.27 2136961.17 2580475.079 2258207.309 2494759.381 2509306.293 0.951628383 1.051238854 1.237355591 1.057961898 1.222689426 0.851614319 1.028361937 0.899932908 0.994202815 1 21.25885715 -6.264875734 24.99997514 0.953164427 1.106065487 0.402638942 0.090932608 311.3475173 2265088.739 0.031061383 0.02846786 5.43E-07 6.264875734 0.152901061 NLDIERPTYTNLNR ddPTM_HeLa_A486_30min_R1 6 NLDIERPTYTNLNR 14 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;C9JDS9;P68363;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;;;; ;;;;; 258.41 1.56E-41 3138508000 1951546 1881526 1445289 806122 2406608 1978854 2434316 2259334 1739638 2318747 FALSE FALSE TRUE 1814752.703 1732427.027 2004943.607 1876692.755 2104748.784 1734723.113 1825224.389 1744932.969 1890431.223 1738117.659 1.044090827 0.99672598 1.153514319 1.079727109 1.210935735 0.998046999 1.050115555 1.003921087 1.087631331 1 20.72909432 NLDSAT(ph)SPQNGDQQNGYGDLFPGHKK ddPTM_HeLa_A485_30min_R1 1 NLDSATSPQNGDQQNGYGDLFPGHKK 26 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 NLDS(0.106)AT(0.5)S(0.393)PQNGDQQNGYGDLFPGHKK 79.762 0.0062817 421390000 125060 130680 89719 137910 160960 145330 172640 180310 82712 118690 TRUE FALSE FALSE 152879.1655 145961.8892 122909.7916 145443.6741 144934.2572 152939.2541 135754.0537 136088.6898 99311.53972 89102.76733 1.715762261 1.638129697 1.379416098 1.63231377 1.626596587 1.716436635 1.523567199 1.527322819 1.114573012 1 16.44318262 -7.785192427 2.631200618 0.994717105 1.601848633 0.848278116 0.09207917 0.098386424 1.287971099 0.089694748 0.025273574 1.64E-08 7.785192427 0.607131528 NLDSAT(ph)SPQNGDQQNGYGDLFPGHKK ddPTM_HeLa_A486_30min_R1 1 NLDSATSPQNGDQQNGYGDLFPGHKK 26 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 NLDS(0.101)AT(0.517)S(0.382)PQNGDQQNGYGDLFPGHKK 113.54 0.00026405 250470000 120280 93827 50178 45482 85659 98503 124000 109190 64275 134120 TRUE FALSE FALSE 111848.9931 86391.80681 69608.26541 105884.3945 74914.84948 86350.70137 92973.88846 84329.8206 69846.40875 100535.479 1.112532553 0.859316608 0.692375131 1.053204257 0.745158328 0.858907743 0.924786845 0.838806573 0.69474388 1 16.61734519 -4.264977158 6.14096737 0.846887627 1.118724672 0.319956822 0.113882292 0.137827023 27.1107566 0.026839581 0.157426605 5.43E-05 4.264977158 0.271837045 NLEEEENLGKGEYQES(ph)LRSLEEEGQELPQSADVQR ddPTM_HeLa_A486_30min_R1 2 NLEEEENLGKGEYQESLRSLEEEGQELPQSADVQR 35 2 P48681 P48681 NES Nestin 1 0 NLEEEENLGKGEY(0.031)QES(0.485)LRS(0.485)LEEEGQELPQSADVQR;NLEEEENLGKGEYQES(0.5)LRS(0.5)LEEEGQELPQSADVQR ; 107.29 4.26E-05 235574000 44031 43976 33784.1 25954.8 64091 56123 74195 81849 34563 66480 TRUE FALSE FALSE 40944.65428 40491.1816 46866.20829 60424.08608 56052.10916 49199.11488 55630.62625 63213.76945 37558.94867 49832.97529 0.821637762 0.81253791 0.940465786 1.212532178 1.12479957 0.987280302 1.116341658 1.268512849 0.753696693 1 15.60481309 -4.995302366 4.485156801 1.079231964 0.824172262 0.357102226 0.133583177 0.190610207 9.824372856 0.034914331 0.071345509 1.01E-05 4.995302366 -0.255059703 NLEEEENLGKGEYQESLRS(ph)LEEEGQELPQSADVQR ddPTM_HeLa_A485_30min_R1 2 NLEEEENLGKGEYQESLRSLEEEGQELPQSADVQR 35 2 P48681 P48681 NES Nestin 1 0 NLEEEENLGKGEYQES(0.162)LRS(0.838)LEEEGQELPQSADVQR;NLEEEENLGKGEYQES(0.144)LRS(0.856)LEEEGQELPQSADVQR ; 214.75 6.83E-31 429330000 54434 63410 48292 73278 117991 86028 138050 150708 67051 124220 TRUE FALSE FALSE 66542.6555 70825.24791 66157.2204 77280.99159 106243.4017 90532.29306 108554.4897 113746.6267 80507.52067 93254.2401 0.713561715 0.759485551 0.709428551 0.828712898 1.139287625 0.970811547 1.164070284 1.219747505 0.863312173 1 16.5088817 -5.623865646 4.263169573 1.070744541 0.735313728 0.705488202 0.098273264 0.114627764 3.753171065 0.029193748 0.038317011 2.38E-06 5.623865646 -0.335430813 NLEEEENLGKGEYQESLRS(ph)LEEEGQELPQSADVQR ddPTM_HeLa_A486_30min_R1 1 NLEEEENLGKGEYQESLRSLEEEGQELPQSADVQR 35 2 P48681 P48681 NES Nestin 1 0 NLEEEENLGKGEYQES(0.001)LRS(0.999)LEEEGQELPQSADVQR 297.37 4.77E-94 237070000 84363 78250 59675 55264 103610 99908 136800 160850 67041 120350 TRUE FALSE FALSE 78449.58935 72049.18502 82782.75815 128657.3849 90614.26768 87582.36675 102571.1931 124227.9663 72852.16786 90213.57665 0.869598482 0.798651242 0.917630818 1.426142158 1.004441582 0.970833549 1.136981781 1.377042912 0.807552151 1 16.46105695 -5.016756461 24.28766028 1.115463673 0.840128803 0.289135738 0.175892536 556.2044576 806195.0086 0.046214343 0.082842977 9.62E-06 5.016756461 -0.275334869 NLEELEEKSTT(ph)PPPAEPVSLPQEPPKPR ddPTM_HeLa_A485_30min_R1 2 NLEELEEKSTTPPPAEPVSLPQEPPKPR 28 2 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 NLEELEEKS(0.044)T(0.165)T(0.79)PPPAEPVSLPQEPPKPR;NLEELEEKS(0.036)T(0.166)T(0.798)PPPAEPVS(0.001)LPQEPPKPR ; 75.534 0.0060167 3349400000 342987 385520 346300 690436 2293510 1238440 3196520 5413190 747130 1504790 TRUE FALSE FALSE 419283.2749 430603.2104 474410.7807 728152.7704 2065160.091 1303282.803 2513557.389 4085596.665 897072.1379 1129673.547 0.371154371 0.381174908 0.419953873 0.644569197 1.828103435 1.153680908 2.225029874 3.616617099 0.794098561 1 20.10747449 -5.809212265 1.315877689 2.015353859 0.327010359 0.398751592 0.765558142 0.394852997 1.434696184 0.30443931 0.412141101 1.55E-06 5.809212265 -1.6883435 NLEELEEKSTT(ph)PPPAEPVSLPQEPPKPR ddPTM_HeLa_A486_30min_R1 2 NLEELEEKSTTPPPAEPVSLPQEPPKPR 28 2 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 NLEELEEKS(0.037)T(0.031)T(0.933)PPPAEPVSLPQEPPKPR;NLEELEEKS(0.047)T(0.199)T(0.754)PPPAEPVSLPQEPPKPR ; 82.765 0.0040187 1090040000 186001 141180 158975 372820 653510 303190 718500 892090 145929 349700 TRUE FALSE FALSE 172963.2904 129992.3826 220534.3775 867943.8013 571540.6821 265785.5004 538723.7005 688980.5812 158578.2432 262132.8438 0.659830672 0.495902691 0.841307691 3.311083757 2.180347467 1.013934372 2.055155289 2.628364195 0.604953736 1 17.9999386 -5.026201957 24.55426545 1.90045047 0.60055084 0.324804132 0.768864067 599.3649048 561674.8268 0.206303467 0.359047708 9.41E-06 5.026201957 -1.29989963 NLEHLS(ph)S(ph)FSSDEDDPGYSQDAYK ddPTM_HeLa_A485_30min_R1 1 NLEHLSSFSSDEDDPGYSQDAYK 23 0 A0A3B3IRW6;Q2KHR3-2;Q2KHR3;H0YCQ7 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 2 0 NLEHLS(0.49)S(0.51)FS(0.514)S(0.485)DEDDPGY(0.001)SQDAYK 56.914 0.025885 56877000 44624 55150 51080 35714 84003 45593 67958 62149 52639 67806 TRUE FALSE FALSE 54550.45485 61599.31276 69976.61762 37664.96539 75639.36637 47980.17898 53438.21813 46906.8603 63203.16447 50903.21208 1.071650543 1.210126242 1.374699449 0.73993298 1.48594486 0.942576647 1.049800513 0.921491167 1.241634111 1 15.63546908 NLEHLSSFS(ph)S(ph)DEDDPGYSQDAYK ddPTM_HeLa_A486_30min_R1 1 NLEHLSSFSSDEDDPGYSQDAYK 23 0 A0A3B3IRW6;Q2KHR3-2;Q2KHR3;H0YCQ7 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 2 0 NLEHLS(0.133)S(0.594)FS(0.656)S(0.617)DEDDPGYSQDAYK 107.2 0.00023116 84414000 100490 105820 73660 12588 99591 85823 97409 106370 99337 51787 TRUE FALSE FALSE 93446.16993 97434.43781 102183.1247 29305.50016 87099.36813 75235.03084 73036.23791 82151.87304 107947.6111 38819.19812 2.407215359 2.509954933 2.632283242 0.754922862 2.24371889 1.938088226 1.881446332 2.116269192 2.780779005 1 15.2444827 NLEQILNGGES(ph)PK ddPTM_HeLa_A485_30min_R1 3 NLEQILNGGESPK 13 0 G3V340;Q13033-2;Q13033;G3V3G7 G3V340 STRN3 Striatin-3 1 0 NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK ;; 259.68 2.45E-41 609180000 934660 753290 499270 1844170 1043530 727660 1467170 1105470 650060 2354200 TRUE FALSE FALSE 1142571.892 841380.7127 683970.7494 1944912.337 939632.4891 765759.1524 1153697.144 834351.7492 780521.0793 1767341.266 0.646491945 0.476071446 0.387005477 1.100473562 0.531664431 0.433283128 0.652786853 0.472094306 0.441635747 1 20.75314921 -10.22203754 4.344613442 1.000176537 0.572879409 0.301796415 0.195614117 275923818.7 916398.4888 491247.976 0.047889713 6.00E-11 10.22203754 -0.427297128 NLEQILNGGES(ph)PK ddPTM_HeLa_A486_30min_R1 4 NLEQILNGGESPK 13 0 G3V340;Q13033-2;Q13033;G3V3G7 G3V340 STRN3 Striatin-3 1 0 NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK ;;; 383.36 9.90E-125 1178600000 2417830 2214260 768700 2076660 1467220 2525880 3666420 2888480 1695990 5297790 TRUE FALSE FALSE 2248352.603 2038793.973 1066361.226 4834569.429 1283187.586 2214262.607 2749042.937 2230836.159 1842999.779 3971188.901 0.566166118 0.513396372 0.268524428 1.217411095 0.323124288 0.557581788 0.692246832 0.561755236 0.4640927 1 21.92113956 -10.90711223 2.332804998 1.256568558 0.577262836 0.213852251 0.245062098 21199479.24 10333409.77 29790543.42 0.05910439 1.24E-11 10.90711223 -0.679305722 NLEQILNGGES(ph)PKQK ddPTM_HeLa_A485_30min_R1 1 NLEQILNGGESPKQK 15 1 G3V340;Q13033-2;Q13033 G3V340 STRN3 Striatin-3 1 0 NLEQILNGGES(1)PKQK 163.79 2.95E-12 238880000 78973 74201 51145 163980 187470 113830 281390 325520 70082 284260 TRUE FALSE FALSE 96540.2714 82878.16149 70065.66382 172937.8122 168804.8286 119789.9628 221268.7278 245685.7096 84146.81457 213399.2134 0.452392817 0.388371448 0.328331406 0.810395734 0.791028354 0.561342101 1.03687696 1.151296229 0.394316423 1 17.70319533 -5.268051791 22.85752393 0.824013022 0.389565825 0.466580504 0.211187997 138.1960876 477712.8575 0.05912731 0.090305341 5.39E-06 5.268051791 -0.434447197 NLEQILNGGES(ph)PKQK ddPTM_HeLa_A486_30min_R1 2 NLEQILNGGESPKQK 15 1 G3V340;Q13033-2;Q13033 G3V340 STRN3 Striatin-3 1 0 NLEQILNGGES(1)PKQK;NLEQILNGGES(1)PKQK ; 166.29 2.45E-12 646390000 270150 243320 128781 353400 368060 344400 602980 659230 192516 525480 TRUE FALSE FALSE 251213.8801 224038.437 178648.4521 822733.0598 321894.4828 301911.4296 452108.0263 509137.7199 209203.4419 393896.3877 0.637766397 0.568775049 0.453541738 2.088704252 0.817205978 0.766474228 1.147784139 1.292567629 0.531112872 1 18.58745666 NLES(ph)PEKHLQN ddPTM_HeLa_A486_30min_R1 2 NLESPEKHLQN 11 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 NLES(1)PEKHLQN;NLES(1)PEKHLQN ; 110.44 0.00026515 432490000 1146330 937650 464080 663150 1128550 1194090 1645810 1604590 820120 1829760 TRUE FALSE FALSE 1065978.187 863347.1991 643784.2045 1543846.714 986996.7357 1046775.316 1234010.93 1239259.885 891208.6619 1371576.186 0.777192107 0.629456247 0.469375461 1.125600407 0.719607664 0.763191521 0.899702797 0.903529747 0.649769711 1 20.38740333 -1.557873237 0.090657205 1.087851556 7.09E-13 0.159752639 0.167921691 255.4735836 1.86832138 3.249195939 34.57885768 0.027677494 1.557873237 -1.087851556 NLFASFPTEESSINYTFKT(ph)PEK ddPTM_HeLa_A486_30min_R1 1 NLFASFPTEESSINYTFKTPEK 22 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NLFASFPTEESSINYT(0.023)FKT(0.977)PEK 246.46 6.13E-47 1051600000 785480 540940 167960 619930 406150 815320 1201600 1056800 472970 1501500 TRUE FALSE FALSE 730421.9082 498073.9443 232998.6101 1443228.37 355206.8798 714734.108 900946.9708 816189.7098 513967.4204 1125514.627 0.648967051 0.442529961 0.207015177 1.282283086 0.315595081 0.635028716 0.800475577 0.725170238 0.456651036 1 20.10215338 -14 0.148881943 2.289667452 0.501230062 0.137703817 0.284592747 278.4328428 2.467878043 107.4525889 1.456723772 1.00E-14 14 -1.78843739 NLFLVIFQR ddPTM_HeLa_A485_30min_R1 1 NLFLVIFQR 9 0 Q09161;X6R941 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 0 148.38 0.00033776 16975000 9357.9 9105.5 10408 14071 15850 5310.5 12702 9146.1 7998.2 22051 FALSE FALSE TRUE 11439.53257 10170.30902 14258.35231 14839.6631 14271.91835 5588.549568 9988.113934 6903.004634 9603.365376 16554.09152 0.691039587 0.614368297 0.861318925 0.896434763 0.862138422 0.337593251 0.603362252 0.416996887 0.580120351 1 14.01490022 -3.889997966 17.43609035 0.670595647 2.386677915 0 0.205826405 3763.447666 625463.078 0.052431946 12423.53201 0.000128826 3.889997966 1.716082267 NLFLVIFQR ddPTM_HeLa_A486_30min_R1 2 NLFLVIFQR 9 0 Q09161;X6R941 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 0 0 ; ; 174.27 5.36E-07 33042000 19333.4 22145 16757.8 14988.4 19688.4 23872 29629 26972 18931 27939 FALSE FALSE TRUE 17978.2285 20390.14955 23246.86895 34893.75267 17218.89728 20926.91535 22215.51082 20831.06439 20571.95432 20942.89255 0.858440564 0.973607132 1.11001233 1.66613817 0.822183337 0.999237107 1.060766117 0.994660329 0.982288109 1 14.35417309 NLGLYVK ddPTM_HeLa_A485_30min_R1 1 NLGLYVK 7 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 108.24 0.022437 27721000 29701 30341 27292 42218 55373 28947 50442 45262 30622 63317 FALSE FALSE TRUE 36307.88498 33889.11602 37388.44651 44524.26244 49859.86969 30462.62016 39664.65463 34161.42353 36767.55452 47533.23716 0.763842043 0.712956197 0.7865748 0.936697458 1.048947487 0.640869883 0.834461463 0.718684979 0.77351253 1 15.53664904 -11.47172208 2.096973165 2.914171399 0.803789198 0.222252095 0.111154326 4071974.631 345798.0342 36984053.29 0.031038812 3.38E-12 11.47172208 -2.110382201 NLGNCFRK ddPTM_HeLa_A486_30min_R1 1 NLGNCFRK 8 1 J3QR85 J3QR85 UTP18 0 0 62.715 0.033198 0 147550 297150 191000 167890 414260 421450 519640 485050 340080 398760 FALSE FALSE TRUE 137207.5069 273602.7518 264960.3152 390856.4047 362299.648 369455.784 389620.5758 374614.7036 369558.4082 298907.9005 0.459029376 0.915341319 0.886427942 1.307614834 1.212077859 1.236018798 1.303480353 1.253278026 1.236362129 1 18.1893415 -4.202561372 0.916482826 1.239358236 1.66E-14 0.821747848 0.108019532 0.858466209 0.530999582 0.035333828 1.092489793 6.27E-05 4.202561372 -1.239358236 down NLGS(ph)GSPKPR ddPTM_HeLa_A486_30min_R1 1 NLGSGSPKPR 10 1 A0A1C7CYX9 A0A1C7CYX9 1 0 NLGS(0.86)GS(0.14)PKPR 65.295 0.0095811 318310000 597290 512850 250230 293000 484780 616130 757480 718700 426590 900400 TRUE FALSE FALSE 555423.0554 472209.8982 347125.7574 682118.8074 423974.372 540118.145 567950.4922 555067.6991 463567.1647 674933.9794 0.82292946 0.69963865 0.514310685 1.010645231 0.628171621 0.800253301 0.841490441 0.822402955 0.686833348 1 19.36438686 -14 0.193685898 2.043246169 0.717434026 0.234699732 0.12920595 200.8800139 1.973812971 81.07703529 0.327935718 1.00E-14 14 -1.325812142 NLGS(ph)INTELQDVQR ddPTM_HeLa_A485_30min_R1 1 NLGSINTELQDVQR 14 0 A0A087X1A9;O75396 A0A087X1A9 SEC22B Vesicle-trafficking protein SEC22b 1 0 NLGS(0.999)INT(0.001)ELQDVQR 120.77 9.99E-05 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 NLGS(ph)INTELQDVQR ddPTM_HeLa_A486_30min_R1 2 NLGSINTELQDVQR 14 0 A0A087X1A9;O75396 A0A087X1A9 SEC22B Vesicle-trafficking protein SEC22b 1 0 NLGS(1)INTELQDVQR;NLGS(0.982)INT(0.018)ELQDVQR ; 102.78 0.00050219 91639000 108725 107386 76119 32550 112687 90389 112059 107320 109125 127983 TRUE FALSE FALSE 101103.939 98876.34227 105594.3153 75778.04499 98552.7457 79237.72419 84020.65296 82885.57878 118584.0429 95935.22377 1.053877137 1.030657337 1.100683474 0.789887614 1.027284264 0.825950272 0.875806087 0.863974414 1.236084497 1 16.54977299 -5.21902849 24.99338963 0.935415552 1.05863114 0.157660129 0.121410274 847.0034773 499151.1215 0.032098886 0.055596253 6.04E-06 5.21902849 0.123215588 NLGSGS(ph)PKPR ddPTM_HeLa_A485_30min_R1 7 NLGSGSPKPR 10 1 A0A1C7CYX9 A0A1C7CYX9 1 0 NLGS(0.027)GS(0.973)PKPR;NLGS(0.001)GS(0.999)PKPR;NLGS(0.001)GS(0.999)PKPR;NLGS(0.002)GS(0.998)PKPR;NLGS(0.01)GS(0.99)PKPR;NLGS(0.002)GS(0.998)PKPR;NLGS(0.001)GS(0.999)PKPR ;;;;;; 137.95 1.45E-05 23236810000 8842500 7707360 5004710 14788800 11153250 7728120 15926740 13108710 5972720 20859640 TRUE FALSE FALSE 10809483.62 8608668.707 6856160.492 15596674.7 10042793.27 8132752.413 12523861.89 9893778.319 7171390.119 15659715.64 0.690273302 0.549733399 0.437821519 0.995974324 0.641313897 0.519342279 0.799750275 0.631798083 0.457951491 1 23.90055468 -10.04825951 4.172174054 1.000037114 0.639635573 0.321397057 0.158598027 50009506.26 123758490.9 28595.26363 0.039421604 8.95E-11 10.04825951 -0.360401541 NLGSGS(ph)PKPR ddPTM_HeLa_A486_30min_R1 6 NLGSGSPKPR 10 1 A0A1C7CYX9 A0A1C7CYX9 1 0 NLGS(0.29)GS(0.71)PKPR;NLGS(0.121)GS(0.879)PKPR;NLGS(0.001)GS(0.999)PKPR;NLGS(0.029)GS(0.971)PKPR;NLGS(0.006)GS(0.994)PKPR;NLGS(0.229)GS(0.771)PKPR ;;;;; 132.06 3.35E-05 20380190000 10575570 8680350 3575070 6152340 7412760 10345810 15211380 13233710 6987170 17764300 TRUE FALSE FALSE 9834277.155 7992487.453 4959432.848 14322958.44 6482982.52 9069449.151 11405331.83 10220683.12 7592823.521 13316003.65 0.738530674 0.600216676 0.372441536 1.075619894 0.486856469 0.681093922 0.85651312 0.767548837 0.570202872 1 23.66665784 -14 0.182056888 2.272193336 0.622881934 0.199380339 0.187539806 219.4592243 2.119775247 101.3818171 0.559721024 1.00E-14 14 -1.649311401 NLHVVFTMNPSSEGLKDR ddPTM_HeLa_A486_30min_R1 1 NLHVVFTMNPSSEGLKDR 18 1 Q14204;A0A2R8Y706;A0A2R8YFZ7;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 111.33 5.35E-05 5704900 21685 20462 24104 10116 30163 21413 29788 26314 20886 24256 FALSE FALSE TRUE 20164.99348 18840.5166 33437.71433 23550.55923 26379.67528 18771.28177 22334.72733 20322.87663 22696.4153 18182.13972 1.109055028 1.036210088 1.839041765 1.295257852 1.450856483 1.03240224 1.22838828 1.117738448 1.248280766 1 14.15023437 -6.259922604 24.95500793 1.139159747 1.353431852 0.207633046 0.214507125 243.7122437 4009745.428 0.07498787 0.071241127 5.50E-07 6.259922604 0.214272105 NLHYFNSDSFASHPNYPYS(ph)DEY ddPTM_HeLa_A486_30min_R1 1 NLHYFNSDSFASHPNYPYSDEY 22 0 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 1 0 NLHYFNSDSFASHPNYPY(0.001)S(0.998)DEY(0.001) 92.198 0.0010301 108120000 71086 117540 149990 15483 158090 66672 78028 86636 116370 50730 TRUE FALSE FALSE 66103.23849 108225.7023 208070.1449 36045.20647 138260.8781 58446.68651 58504.5691 66910.87405 126457.0453 38026.8778 1.738329369 2.84603177 5.471659965 0.947887614 3.635872469 1.536983573 1.538505722 1.759567914 3.325464845 1 15.21473187 -6.273371599 24.65867978 1.861227468 2.954717956 0.162584989 1.241896661 1241.241329 2565095.164 0.431952953 0.383955995 5.33E-07 6.273371599 1.093490487 NLHYFNSDSFASHPNYPYSDEY ddPTM_HeLa_A485_30min_R1 2 NLHYFNSDSFASHPNYPYSDEY 22 0 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ; ; 165.1 2.50E-17 43183000 9126.1 11794.6 10956.9 10033.2 18893.1 9642.4 13472.6 14538.6 11031.4 16468.7 FALSE FALSE TRUE 11156.16946 13173.87587 15010.31326 10581.28831 17012.03663 10147.26115 10594.06895 10972.98555 13245.30079 12363.35617 0.902357685 1.065558226 1.21409697 0.855858892 1.376004734 0.820752958 0.856892643 0.887541004 1.071335373 1 13.59378281 NLILVVR ddPTM_HeLa_A485_30min_R1 1 NLILVVR 7 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 139.92 0.0038399 31792000 21440 21692 27758 35292 37753 19833 29602 24743 25788 55406 FALSE FALSE TRUE 26209.25403 24228.6907 38026.83931 37219.9126 33994.17876 20871.42521 23277.29087 18674.74045 30963.41506 41594.30387 0.630116424 0.582500209 0.914231896 0.894831963 0.817279666 0.50178566 0.559626889 0.448973506 0.744414792 1 15.34409835 -6.246633583 24.71863502 0.610812679 0.772691369 0.078764484 0.174199759 1309.627148 2186455.386 0.057925083 0.057681809 5.67E-07 6.246633583 0.16187869 NLKPS(ph)SETK ddPTM_HeLa_A486_30min_R1 2 NLKPSSETK 9 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 NLKPS(0.5)S(0.5)ETK;NLKPS(0.5)S(0.5)ET(0.001)K ; 89.301 0.0017858 307620000 345930 271630 100694 217518 239350 391420 536210 464860 217354 711960 TRUE FALSE FALSE 321682.0934 250105.0495 139685.4135 506392.8968 209328.4911 343130.5801 402044.5865 359021.5258 236194.4197 533680.5819 0.602761472 0.468641839 0.261739734 0.948868881 0.39223554 0.642951218 0.753343105 0.672727354 0.442576379 1 19.02561699 -14 0.174466273 2.624908889 0.488484859 0.311522585 0.187113508 163.1766815 1.553386831 92.27567258 0.624800588 1.00E-14 14 -2.13642403 NLKPSS(ph)ETK ddPTM_HeLa_A485_30min_R1 1 NLKPSSETK 9 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 NLKPS(0.089)S(0.911)ETK 104.24 0.00060006 150400000 104660 77061 48907 228460 139450 94371 198880 174730 75951 322470 TRUE FALSE FALSE 127941.2559 86072.61361 66999.73449 240940.1913 125565.8684 99312.11963 156387.6633 131877.1935 91193.66904 242084.1636 0.528499072 0.355548303 0.276762154 0.995274485 0.518686834 0.410237986 0.646005344 0.544757623 0.376702332 1 17.88514918 -10.87082508 2.404831602 1.234294746 0.520726323 0.367461155 0.190075189 26692628.74 14642668.58 35660092.42 0.049059407 1.35E-11 10.87082508 -0.713568423 NLLEDDS(ph)DEEEDFFLR ddPTM_HeLa_A485_30min_R1 2 NLLEDDSDEEEDFFLR 16 0 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 0 NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR ; 184.8 9.29E-18 249689000 150783 165671 138231 200597 188855 144172 229130 190267 151040 330690 TRUE FALSE FALSE 184324.1582 185044.7823 189368.3992 211555.1062 170051.9331 151720.623 180174.5037 143603.7199 181352.3426 248255.0689 0.742478931 0.745381688 0.762797715 0.852168325 0.684988765 0.611148138 0.725763645 0.578452317 0.730508116 1 17.92146365 -8.050697727 23.18897663 1.000000001 0.712523362 0.579993683 0.072931935 5544.355357 2535965.541 0.076148238 0.01966139 8.90E-09 8.050697727 -0.287476639 NLLEDDS(ph)DEEEDFFLR ddPTM_HeLa_A486_30min_R1 5 NLLEDDSDEEEDFFLR 16 0 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 0 NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR ;;;; 325.2 3.17E-79 420832000 388237 374085 305278.4 140927.6 428056 384054 416725 376486 390443 487632 TRUE FALSE FALSE 361023.5912 344441.1422 423490.3721 328086.5749 374365.225 336673.3223 312455.9973 290768.3564 424286.9136 365525.7732 0.987682997 0.942316978 1.158578692 0.897574395 1.024182841 0.921065892 0.854812493 0.795479766 1.160757858 1 18.47961361 -6.269584316 23.05281339 0.927915007 1.001637654 0.047066863 0.110464309 548.2425824 1551695.464 0.037805626 0.033982882 5.38E-07 6.269584316 0.073722647 NLLEDDS(ph)DEEEDFFLRGPSGPR ddPTM_HeLa_A485_30min_R1 1 NLLEDDSDEEEDFFLRGPSGPR 22 1 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 0 NLLEDDS(1)DEEEDFFLRGPSGPR 167.06 3.35E-14 41241000 13195 31881 18490 11012 23592 33299 45791 71417 13853 18290 TRUE FALSE FALSE 16130.18223 35609.20562 25330.22043 11613.55768 21243.09764 35042.48415 36007.37877 53901.86877 16633.17003 13730.6396 1.174758256 2.593412008 1.844795375 0.845813306 1.547130961 2.552137786 2.622410886 3.925663358 1.211390767 1 13.74511121 -6.261280624 24.16994797 2.467680191 1.627874998 0.102486574 0.877035291 16.40661185 2497975.993 0.29396116 0.27641411 5.48E-07 6.261280624 -0.839805193 NLLEENFEEHSMS(ph)PER ddPTM_HeLa_A485_30min_R1 2 NLLEENFEEHSMSPER 16 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLLEENFEEHS(0.009)MS(0.991)PER;NLLEENFEEHS(0.402)MS(0.598)PER ; 163.78 4.82E-12 444940000 439200 425570 397480 532370 497610 455980 568140 538940 444230 754010 TRUE FALSE FALSE 536898.5248 475336.7095 544524.3925 561452.0251 448066.2012 479854.4077 446752.2477 406764.12 533382.8863 566049.1835 0.948501544 0.839744537 0.961973638 0.991878518 0.791567613 0.847725642 0.789246342 0.718602079 0.942290709 1 19.11056789 -5.769143441 24.99734225 0.83119356 0.930572352 0.18927563 0.083924837 248.1668059 805224.0615 0.025186546 0.02909231 1.70E-06 5.769143441 0.099378792 NLLEENFEEHSMS(ph)PER ddPTM_HeLa_A486_30min_R1 4 NLLEENFEEHSMSPER 16 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLLEENFEEHS(0.002)MS(0.998)PER;NLLEENFEEHSMS(1)PER;NLLEENFEEHS(0.021)MS(0.979)PER;NLLEENFEEHS(0.098)MS(0.902)PER ;;; 235.5 1.88E-41 492613000 815977 919625 584372 331383 759789 855744 858385 831687 757550 1008257 TRUE FALSE FALSE 758781.226 846750.5658 810656.4884 771476.3712 664489.1789 750171.0058 643607.9939 642330.0257 823215.0439 755782.8845 1.003967199 1.120362187 1.072604984 1.020764544 0.879206439 0.992574748 0.85157789 0.84988697 1.089221602 1 19.52761232 -5.567888241 5.018157035 0.93431249 1.068038835 0.352010457 0.074624192 0.192099566 11.01671658 0.021834208 0.028944012 2.70E-06 5.567888241 0.133726345 NLLEENFEEHSMS(ph)PEREMGNENIPSTVSTISR ddPTM_HeLa_A485_30min_R1 1 NLLEENFEEHSMSPEREMGNENIPSTVSTISR 32 1 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLLEENFEEHS(0.164)MS(0.836)PEREMGNENIPSTVSTISR 98.987 0.00010275 73777000 14762 15843 16210 19477 32120 20375 26137 28990 20161 26745 TRUE FALSE FALSE 18045.75597 17695.70103 22206.75355 20540.97919 28922.02002 21441.80349 20552.61643 21880.15705 24207.12777 20077.96371 0.898784171 0.881349389 1.106026183 1.023060879 1.440485721 1.067927197 1.023640481 1.089759767 1.205656516 1 14.29332534 -4.788515062 4.897546172 1.127166877 0.88708453 0.363011421 0.121401961 0.184751124 10.94363298 0.032483895 0.076599008 1.63E-05 4.788515062 -0.240082347 NLLGLY(ph)PR ddPTM_HeLa_A485_30min_R1 1 NLLGLYPR 8 0 Q13625-2;Q13625;Q13625-3;A0A3B3ISJ2;Q96KQ4 Q13625-2 TP53BP2;PPP1R13B Apoptosis-stimulating of p53 protein 2;Apoptosis-stimulating of p53 protein 1 1 0 NLLGLY(1)PR 51.854 0.0080415 0 88437 117250 113320 98477 125470 134140 145510 170180 107530 148440 TRUE FALSE FALSE 108109.5055 130961.3676 155241.7836 103856.5492 112977.7662 141163.363 114420.5998 128443.0882 129110.2847 111436.6398 0.970143264 1.175209229 1.393094622 0.931978471 1.01382962 1.266758969 1.026777189 1.152610922 1.158598149 1 16.76586414 -11.50416999 1.79584832 4.85E-05 1.124331221 0.067876073 0.134008547 1855532.621 126497.955 7530375.056 0.03487538 3.13E-12 11.50416999 1.124282737 NLLGLY(ph)PR ddPTM_HeLa_A486_30min_R1 1 NLLGLYPR 8 0 Q13625-2;Q13625;Q13625-3;A0A3B3ISJ2;Q96KQ4 Q13625-2 TP53BP2;PPP1R13B Apoptosis-stimulating of p53 protein 2;Apoptosis-stimulating of p53 protein 1 1 0 NLLGLY(1)PR 50.878 0.0086115 0 68939 93781 91093 29376 114480 87604 92524 96071 91875 103140 TRUE FALSE FALSE 64106.7321 86349.45202 126366.6492 68388.81258 100120.8509 76796.30917 69373.51658 74197.73052 99838.79897 77313.07267 0.829183602 1.116880355 1.634479717 0.884569843 1.295005456 0.993315962 0.897306422 0.959704846 1.291357277 1 16.23842476 -6.296336986 24.36763045 1.017629017 1.162015991 0.066199988 0.228989298 1251.887316 874139.8097 0.081141976 0.071564372 5.05E-07 6.296336986 0.144386975 NLLHADSNGYTNLPDVVQPS(ph)HSPTENSK ddPTM_HeLa_A485_30min_R1 1 NLLHADSNGYTNLPDVVQPSHSPTENSK 28 0 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 NLLHADSNGYTNLPDVVQPS(0.729)HS(0.218)PT(0.05)ENS(0.003)K 173.25 1.97E-14 281570000 50719 46890 30913 72573 62675 60317 78300 64170 45201 124360 TRUE FALSE FALSE 62001.26657 52373.37761 42349.0051 76537.47923 56434.85693 63475.10485 61570.56535 48432.20689 54272.42609 93359.34068 0.664114229 0.560987012 0.453612941 0.819815978 0.60449074 0.679900955 0.659500859 0.518771946 0.581328292 1 16.51050675 -10.11803424 3.992437344 1.000099976 0.615430862 0.596046194 0.094877128 129934343.9 272637999.2 202375.9982 0.023919821 7.62E-11 10.11803424 -0.384669114 NLLHADSNGYTNLPDVVQPS(ph)HSPTENSK ddPTM_HeLa_A486_30min_R1 3 NLLHADSNGYTNLPDVVQPSHSPTENSK 28 0 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 NLLHADSNGYTNLPDVVQPS(0.519)HS(0.401)PT(0.065)ENS(0.015)K;NLLHADSNGYTNLPDVVQPS(0.452)HS(0.268)PT(0.268)ENS(0.011)K;NLLHADSNGYTNLPDVVQPS(0.608)HS(0.37)PT(0.021)ENSK ;; 103.73 0.00036235 689460000 269401 250173 136110 74212 255945 296610 347774 306770 239067 333938 TRUE FALSE FALSE 250517.3811 230348.3804 188815.4372 172769.2865 223841.9915 260017.2739 260757.2668 236925.1677 259789.52 250317.7512 1.000797506 0.920223912 0.754303026 0.690199898 0.894231394 1.038748841 1.041705055 0.946497668 1.037838982 1 17.93340108 -6.107618706 4.732214803 1.010252043 0.835726879 0.488805222 0.083320738 0.215872442 7.637067896 0.030722915 0.030997571 7.81E-07 6.107618706 -0.174525165 NLLHADSNGYTNLPDVVQPSHS(ph)PTENSK ddPTM_HeLa_A485_30min_R1 1 NLLHADSNGYTNLPDVVQPSHSPTENSK 28 0 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 NLLHADSNGYTNLPDVVQPS(0.256)HS(0.634)PT(0.106)ENS(0.005)K 246.13 2.45E-50 137280000 134650 112400 74445 150080 153900 119470 182230 161320 96203 271020 TRUE FALSE FALSE 164602.428 125544.2022 101985.3034 158278.4904 138577.1756 125725.2645 143295.0718 121756.0171 115510.0597 203459.7018 0.809017346 0.617047018 0.501255544 0.777935331 0.681103798 0.617936935 0.704292155 0.59842817 0.567729426 1 17.63438355 -10.52080633 3.558420423 1.006885781 0.650654004 0.577993491 0.088998587 18437573.27 10941710.91 957381.5322 0.02139039 3.01E-11 10.52080633 -0.356231778 NLLHADSNGYTNLPDVVQPSHS(ph)PTENSK ddPTM_HeLa_A486_30min_R1 1 NLLHADSNGYTNLPDVVQPSHSPTENSK 28 0 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 NLLHADSNGYTNLPDVVQPS(0.124)HS(0.751)PT(0.124)ENS(0.001)K 249.04 1.32E-50 236250000 171310 122020 69930 33099 137570 128730 170290 162080 139030 152590 TRUE FALSE FALSE 159302.0536 112350.6908 97008.76879 77056.14473 120314.6878 112848.6014 127681.6409 125177.9222 151081.2323 114380.4708 1.392738223 0.982254138 0.848123531 0.673682703 1.051881383 0.986607247 1.116288821 1.094399431 1.320865627 1 16.80348122 -6.809785401 1.9313985 1.15550122 0.965452933 0.118786142 0.185520617 0.674864058 5.136361277 0.102675899 0.062475847 1.55E-07 6.809785401 -0.190048288 NLLPAYRPNLS(ph)PPAEAGLALPPTGYR ddPTM_HeLa_A485_30min_R1 1 NLLPAYRPNLSPPAEAGLALPPTGYR 26 1 Q8N1G0;F8WCX2;Q8N1G0-2;H0Y5I5 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 NLLPAYRPNLS(1)PPAEAGLALPPTGYR 84.516 0.0026705 162460000 92655 100570 63172 114650 132660 97961 133150 144900 90031 132530 TRUE FALSE FALSE 113265.7851 112330.7867 86541.95161 120913.0392 119451.9046 103090.0865 104701.4148 109363.0478 108099.3959 99492.71003 1.138433007 1.12903535 0.869832087 1.215295464 1.200609618 1.036157186 1.052352627 1.099206643 1.086505693 1 16.6023032 -9.88172791 6.591567487 0.999999997 1.090728588 0.082307092 0.092016082 5.17E-09 1.02E-09 0.090264585 0.021892376 1.31E-10 9.88172791 0.090728591 NLLQQS(ph)WEDMKR ddPTM_HeLa_A485_30min_R1 1 NLLQQSWEDMKR 12 1 Q8TDM6-4;Q8TDM6;Q8TDM6-2;R4GMQ2 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 NLLQQS(1)WEDMKR 83.54 0.0023879 239300000 66449 77024 49937 96200 91486 79185 111250 110040 69547 130430 TRUE FALSE FALSE 81230.3508 86031.28678 68410.77435 101455.1624 82377.33261 83331.00416 87480.52867 83052.51746 83504.44498 97916.20139 0.829590503 0.878621572 0.698666547 1.036142752 0.841304416 0.851044086 0.893422411 0.848199954 0.852815405 1 16.57925997 -14 0.317736147 2.29758216 0.853963659 0.229732095 0.077501383 482.5797467 4.310809036 420.7266677 0.068478366 1.00E-14 14 -1.443618501 NLLQQS(ph)WEDMKR ddPTM_HeLa_A486_30min_R1 1 NLLQQSWEDMKR 12 1 Q8TDM6-4;Q8TDM6;Q8TDM6-2;R4GMQ2 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 NLLQQS(1)WEDMKR 60.489 0.017082 283760000 77008 65595 36695 37727 68744 74932 80268 82454 68955 124510 TRUE FALSE FALSE 71610.13687 60397.01331 50904.28673 87830.36262 60121.48651 65687.65169 60184.09741 63681.02416 74932.07492 93331.88558 0.767263368 0.647120895 0.545411532 0.941054197 0.644168776 0.703807185 0.644839618 0.682307271 0.802856114 1 16.51008242 -8.082219419 2.922733879 0.999672129 0.695410749 0.472518576 0.09799141 0.30603414 5.995012306 0.092567656 0.02478094 8.28E-09 8.082219419 -0.30426138 NLLS(ph)HS(ph)Y(ph)CLHQDT(ph)MK ddPTM_HeLa_A485_30min_R1 1 NLLSHSYCLHQDTMK 15 0 Q8NH64 Q8NH64 OR51A7 Olfactory receptor 51A7 4 0 NLLS(1)HS(1)Y(1)CLHQDT(1)MK 44.382 0.025847 604020000 236130 118600 93086 740710 275100 186000 473810 310820 151140 975530 TRUE FALSE FALSE 288656.3039 132469.2383 127522.385 781173.1117 247710.0781 195738.6724 372576.6228 234590.9077 181472.4117 732348.3243 0.394151655 0.180882831 0.174128049 1.066668805 0.338240793 0.267275374 0.508742371 0.320326954 0.247795217 1 19.48217047 -10.22230684 4.287464017 1.000273844 0.392673568 0.35709118 0.246022884 690391957.2 1458647408 2640957.873 0.06289935 5.99E-11 10.22230684 -0.607600276 NLLSVAYK ddPTM_HeLa_A485_30min_R1 2 NLLSVAYK 8 0 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2;B4DJF2;I3L3T1;K7EIT4;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;Q04917;E5RGE1;A2IDB2;P31947-2;P31947;P61981;P27348;E9PG15;P62258;P62258-2 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAE;YWHAZ;YWHAH;SFN;YWHAG;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 0 0 ; ; 171.53 5.77E-05 468400000 1106440 1119120 891220 1448610 1766350 1074130 1960260 1852780 991320 2138700 FALSE FALSE TRUE 1352563.761 1249991.349 1220919.365 1527743.896 1590485.992 1130369.786 1541434.437 1398382.8 1190268.831 1605561.45 0.842424163 0.778538466 0.760431415 0.951532497 0.990610476 0.70403396 0.960059447 0.870961868 0.741341187 1 20.61464645 -11.5530706 2.290932873 3.820237011 0.847528489 0.196442538 0.094201716 2875447.169 622480.0673 42720022.8 0.024863786 2.80E-12 11.5530706 -2.972708522 NLLSVAYK ddPTM_HeLa_A486_30min_R1 4 NLLSVAYK 8 0 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2;B4DJF2;I3L3T1;K7EIT4;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;Q04917;E5RGE1;A2IDB2;P31947-2;P31947;P61981;P27348;E9PG15;P62258;P62258-2 P31946-2;E7EX29;P31947-2;P61981;P27348;P62258 YWHAB;YWHAE;YWHAZ;YWHAH;SFN;YWHAG;YWHAQ "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein epsilon" 0 0 ;;; ;;; 171.53 5.77E-05 1027000000 2526610 2242970 1297990 1125770 3353740 2565270 3414140 3085280 2057990 3155420 FALSE FALSE TRUE 2349507.686 2065228.888 1800606.489 2620849.453 2933082.657 2248793.069 2559886.061 2382829.095 2236378.23 2365282.294 0.993330772 0.873142666 0.761264943 1.108049327 1.240056066 0.950750393 1.08227507 1.007418481 0.945501616 1 21.17358095 -5.27358985 24.99967483 1.053443872 0.875635776 0.399715495 0.096305868 742.1933597 1527066.229 0.028219611 0.042206139 5.33E-06 5.27358985 -0.177808096 NLLSVAYK(ac)NVVGAR ddPTM_HeLa_A486_30min_R1 1 NLLSVAYKNVVGAR 14 1 P31946-2;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2;E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;Q04917;A2IDB2;P61981 P31946-2;E7EX29;P61981 YWHAB;YWHAZ;YWHAH;YWHAG "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein eta;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 1 NLLSVAYK(1)NVVGAR 109.15 0.0063759 7180600 6536.1 16941 33160 2478.2 32199 10952 11898 15385 16565 8021.5 FALSE TRUE FALSE 6077.953142 15598.53346 46000.44006 5769.374841 28160.30118 9600.853592 8920.994556 11882.17135 18000.86754 6012.864189 1.01082495 2.594193544 7.650337445 0.959505264 4.683342296 1.59671885 1.483651431 1.976125018 2.993725947 1 12.55383666 -6.287364152 24.49106945 1.85065232 3.438813884 0.151740921 1.851658996 1192.36661 1126421.353 0.650175882 0.573610134 5.16E-07 6.287364152 1.588161564 NLNNSNLFS(ph)PVNR ddPTM_HeLa_A485_30min_R1 3 NLNNSNLFSPVNR 13 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR ;; 142.32 1.11E-07 1745730000 849480 1123280 1086700 959270 1355310 882430 1266160 1120310 868400 1416100 TRUE FALSE FALSE 1038443.895 1254637.825 1488715.551 1011672.491 1220370.578 928632.6703 995634.5724 845552.2159 1042679.915 1063092.331 0.976814398 1.180177664 1.400363362 0.951631821 1.147944108 0.873520242 0.93654572 0.795370441 0.980799018 1 20.01983547 -6.045320437 1.580392801 0.903159187 1.163726163 0.382740172 0.130019259 0.369375524 1.868249621 0.052036184 0.055799512 9.01E-07 6.045320437 0.260566976 NLNNSNLFS(ph)PVNR ddPTM_HeLa_A486_30min_R1 2 NLNNSNLFSPVNR 13 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NLNNSNLFS(1)PVNR;NLNNS(0.002)NLFS(0.998)PVNR ; 185.27 3.26E-17 1153460000 1002280 897560 784760 332620 1032790 835010 1011860 1000470 864020 1248940 TRUE FALSE FALSE 932025.3478 826434.0767 1088640.089 774356.1697 903247.8478 731994.956 758681.9256 772684.8211 938913.9493 936197.2948 0.995543731 0.882756318 1.16283191 0.827129254 0.964805018 0.781881084 0.810386795 0.825344001 1.002901797 1 19.83645307 -5.314423509 24.99997988 0.875823352 1.000616474 0.246567629 0.098865339 431.9467312 203808.3935 0.027160154 0.04028505 4.85E-06 5.314423509 0.124793123 NLNNYEVEY(ph)LCDYKVVKDMEY(ph)Y(ph)LVK ddPTM_HeLa_A486_30min_R1 1 NLNNYEVEYLCDYKVVKDMEYYLVK 25 2 Q9H5I1-3;Q9H5I1 Q9H5I1-3 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 3 0 NLNNY(0.002)EVEY(0.584)LCDY(0.584)KVVKDMEY(0.915)Y(0.915)LVK 50.827 0.012179 3836800000 57291 92875 15672 1274700 51785 247350 315750 285330 66277 1036200 TRUE FALSE FALSE 53275.19675 85515.24676 21740.61811 2967566.02 45289.64242 216834.4719 236746.0103 220366.5877 72021.94372 776728.7755 0.068589189 0.110096664 0.027989974 3.820594928 0.058308182 0.279163691 0.304798815 0.283711116 0.092724701 1 19.56705139 NLNS(ph)S(ph)VRGDR ddPTM_HeLa_A485_30min_R1 2 NLNSSVRGDR 10 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 2 0 NLNS(1)S(1)VRGDR;NLNS(1)S(1)VRGDR ; 73.466 0.01299 691650000 379060 699600 808960 171011 757280 546290 491440 549420 671700 202953 TRUE FALSE FALSE 463380.5893 781412.1343 1108227.968 180352.8979 681882.5442 574892.8997 386439.8293 414673.8835 806504.0288 152360.5522 3.041342281 5.128703743 7.273719817 1.183724365 4.475453354 3.773239802 2.536350937 2.721661727 5.293391349 1 17.2171299 -5.264351544 24.99163471 3.144090507 5.146000044 0.278760439 1.572669153 349.7703655 3001667.506 0.428680207 0.668376944 5.44E-06 5.264351544 2.001909537 NLNS(ph)S(ph)VRGDR ddPTM_HeLa_A486_30min_R1 1 NLNSSVRGDR 10 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 2 0 NLNS(1)S(1)VRGDR 60.157 0.032702 393610000 276250 411380 465490 10242 510090 244580 194280 244400 353080 66728 TRUE FALSE FALSE 256886.3016 378780.7506 645740.1943 23843.8936 446109.7558 214406.2063 145669.0891 188755.4552 383685.2587 50018.87447 5.135787325 7.572756376 12.90993052 0.476697924 8.918828352 4.286506015 2.912282426 3.773684578 7.670809524 1 15.61018497 -5.266012375 24.99853455 4.416988826 8.442817809 0.30189772 3.039723579 507.0111173 2771606.268 0.83080071 1.279643994 5.42E-06 5.266012375 4.025828984 NLPT(ph)PTSAPTPGLAQGVHAPSTCSYMEATASSR ddPTM_HeLa_A485_30min_R1 1 NLPTPTSAPTPGLAQGVHAPSTCSYMEATASSR 33 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 NLPT(0.744)PT(0.165)S(0.038)APT(0.053)PGLAQGVHAPSTCSYMEATASSR 76.358 0.0011183 105590000 13104 9263.5 4789 6449.3 13492 8099.3 11196 14925 5431.9 7688.3 TRUE FALSE FALSE 16018.93959 10346.78574 6560.650387 6801.608929 12148.68911 8523.366824 8803.883137 11264.62035 6522.032506 5771.748303 2.775405086 1.792660594 1.136683383 1.178431313 2.104854278 1.476739175 1.525340794 1.951682533 1.129992537 1 12.49479267 -4.309738753 3.342719954 1.48973013 2.882693564 0.571826609 0.345679642 0.199985096 3.743940878 0.086903318 0.661832856 4.90E-05 4.309738753 1.392963434 NLQEAEEWYK ddPTM_HeLa_A485_30min_R1 1 NLQEAEEWYK 10 0 P08670;B0YJC4;B0YJC5;H7C5W5;P41219-2;P41219;F8W835 P08670 VIM;PRPH Vimentin;Peripherin 0 0 125.75 0.00073229 0 95037 103880 72527 105620 132980 115930 144470 150550 88401 172940 FALSE FALSE TRUE 116177.6528 116027.8624 99357.7554 111389.7532 119740.0443 121999.9155 113602.8043 113627.3764 106142.2698 129829.2407 0.894849667 0.893695917 0.765295667 0.857971228 0.92228872 0.939695209 0.875017089 0.875206354 0.817552881 1 16.98625582 -5.637173125 6.879842068 0.898774292 0.84850728 0.166554604 0.055962763 0.441578454 24.91304394 0.016901104 0.0218468 2.31E-06 5.637173125 -0.050267012 NLQLDYVDLYLIHFPVSVKPGEEVIPK ddPTM_HeLa_A485_30min_R1 3 NLQLDYVDLYLIHFPVSVKPGEEVIPK 27 1 P52895;S4R3P0;Q04828;H0Y804;A6NHU4 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;; ;; 226.09 3.19E-44 94152000 65649 39049 29339.7 88095 55419 70307 130231 113682 36658.3 145378 FALSE FALSE TRUE 80252.39356 43615.44087 40193.67596 92907.40678 49901.28977 73988.1658 102406.083 85801.31125 44015.28456 109137.9401 0.735329927 0.399635918 0.368283256 0.851284225 0.457231369 0.677932585 0.938317902 0.786173087 0.403299572 1 16.73579319 -6.518503876 24.56120676 0.770413954 0.559483057 0.208975824 0.201135957 256.660817 1440954.622 0.075079059 0.059689182 3.03E-07 6.518503876 -0.210930897 NLQLDYVDLYLIHFPVSVKPGEEVIPK ddPTM_HeLa_A486_30min_R1 3 NLQLDYVDLYLIHFPVSVKPGEEVIPK 27 1 P52895;S4R3P0;Q04828;H0Y804;A6NHU4 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;; ;; 194.77 1.92E-20 91972000 72860.2 78956.8 48031.3 59720.4 189153 125668 160472 134566 93672 179100 FALSE FALSE TRUE 67753.07623 72699.97561 66630.30568 139032.1093 165427.667 110164.3599 120320.2083 103928.2594 101791.5644 134252.1943 0.504670159 0.541517969 0.496307014 1.035603999 1.232215741 0.820577723 0.896225264 0.774127082 0.758211551 1 17.03458614 -5.253871654 24.63533182 0.92808458 0.516900297 0.675122054 0.132491597 313.8010612 1021518.019 0.040199036 0.067895972 5.57E-06 5.253871654 -0.411184283 NLQPLMRS(ph)PISR ddPTM_HeLa_A485_30min_R1 3 NLQPLMRSPISR 12 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 NLQPLMRS(1)PISR;NLQPLMRS(1)PISR;NLQPLMRS(1)PISR ;; 147.12 8.23E-08 793490000 233808 369562 326590 281900 673890 404204 651120 847590 308642 416683 TRUE FALSE FALSE 285817.783 412779.0611 447409.2315 297299.4832 606795.1454 425367.4964 512002.8928 639717.2235 370583.6184 312811.5966 0.913705841 1.319577233 1.430283392 0.950410683 1.939810263 1.3598201 1.636777212 2.045055971 1.184686317 1 18.25493447 -5.749650892 24.99981773 1.577005185 1.185128052 0.224721473 0.330942704 315.2426831 668531.2587 0.093631907 0.119881661 1.78E-06 5.749650892 -0.391877133 NLS(ph)FEIK ddPTM_HeLa_A485_30min_R1 8 NLSFEIK 7 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK ;;;;;;; 148.56 0.0010317 6659185000 3639430 2834045 2037574 5525440 4392152 3039576 6176539 5682748 2694124 7322261 TRUE FALSE FALSE 4449008.648 3165461.91 2791357.413 5827280.796 3954853.925 3198723.499 4856870.985 4289045.143 3234809.975 5496956.089 0.809358593 0.575857231 0.507800566 1.060092295 0.719462528 0.581908141 0.883556446 0.780258214 0.588472952 1 22.39020152 -11.12663537 2.404305247 1.555651354 0.724389303 0.212338032 0.160044577 20913342.09 4360853.092 63639781.65 0.040766573 7.47E-12 11.12663537 -0.831262051 NLS(ph)FEIK ddPTM_HeLa_A486_30min_R1 8 NLSFEIK 7 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK ;;;;;;; 144.77 0.0012812 5196965000 4646627 3675718 1626624 2511300 3326796 4760165 6766276 6419296 3213601 7617388 TRUE FALSE FALSE 4320922.443 3384440.719 2256496.375 5846433.314 2909518.225 4172904.24 5073282.178 4957762.433 3492158.522 5709944.464 0.756736334 0.592727432 0.395187097 1.023903709 0.509552806 0.730813455 0.888499391 0.868268065 0.61159238 1 22.44504528 -14 0.070640065 2.030897447 0.346738245 0.221005319 0.175902117 448.2301262 2.272693879 74.48108017 9.090071695 1.00E-14 14 -1.684159202 NLS(ph)FEIKK ddPTM_HeLa_A485_30min_R1 1 NLSFEIKK 8 1 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 NLS(1)FEIKK 83.045 0.0040194 315430000 216230 164630 99714 365420 266010 226000 444780 402320 168150 547830 TRUE FALSE FALSE 264329.6175 183882.0464 136602.358 385381.9693 239525.1104 237833.0105 349749.1195 303650.3892 201896.1626 411266.0631 0.642721686 0.447112132 0.332150815 0.937062413 0.582409131 0.578294763 0.850420569 0.73833077 0.490913744 1 18.6497125 -13.99999999 0.085546226 2.136902664 0.30896233 0.307650809 0.172372246 288.3199179 1.725397758 61.64613243 4.898753433 1.00E-14 13.99999999 -1.827940334 NLS(ph)FEIKK ddPTM_HeLa_A486_30min_R1 2 NLSFEIKK 8 1 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 NLS(1)FEIKK;NLS(1)FEIKK ; 116.24 0.00055472 492970000 942950 690190 251720 526490 695810 1074950 1447070 1438230 681330 1749800 TRUE FALSE FALSE 876854.0744 635496.8308 349192.7253 1225695.327 608535.0216 942333.5983 1084997.78 1110776.425 740388.233 1311638.691 0.668518 0.484506012 0.266226307 0.934476343 0.463950191 0.718439922 0.827207819 0.846861589 0.564475749 1 20.32293893 -7.068917278 0.137847856 1.188418963 0.250741294 0.315130606 0.182753318 7.395898357 0.879903145 2.342854128 2.911210114 8.53E-08 7.068917278 -0.937677669 NLS(ph)FNELYPSGTLK ddPTM_HeLa_A485_30min_R1 1 NLSFNELYPSGTLK 14 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 NLS(1)FNELYPSGTLK 149.73 6.03E-08 71980000 112020 153420 119730 139720 180070 123960 177400 207290 121850 203480 TRUE FALSE FALSE 136938.4625 171361.1344 164023.1094 147352.5498 162141.5985 130450.3539 139497.0408 156451.8025 146304.1773 152756.1808 0.896451206 1.121795096 1.073757596 0.964625779 1.061440511 0.853977582 0.913200632 1.024192944 0.957762734 1 17.22087123 -6.224919128 24.99758641 0.949049626 1.028577171 0.205927049 0.07211112 915.9119795 626928.7997 0.023891169 0.023890386 5.96E-07 6.224919128 0.079527545 NLS(ph)FNELYPSGTLK ddPTM_HeLa_A486_30min_R1 2 NLSFNELYPSGTLK 14 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 NLS(1)FNELYPSGTLK;NLS(1)FNELYPSGTLK ; 168.05 4.89E-12 113668000 298708 272404 184231 97728 297830 294906 339733 309658 219631 293390 TRUE FALSE FALSE 277770.1117 250817.715 255570.1771 227515.7229 260473.3842 258523.4961 254728.2101 239155.6332 238668.7919 219923.2344 1.263032133 1.140478475 1.162088116 1.034523358 1.184383201 1.175516979 1.158259657 1.087450509 1.085236822 1 17.7466405 -14 0.075070274 0.50542265 1.303264515 0.499589895 0.052216595 263.8154854 1.411414828 21.86961907 2.348141062 1.00E-14 14 0.797841865 NLS(ph)GGVLMGFMLNR ddPTM_HeLa_A485_30min_R1 2 NLSGGVLMGFMLNR 14 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 NLS(1)GGVLMGFMLNR;NLS(1)GGVLMGFMLNR ; 214.5 5.36E-23 200469000 98473 121315 100061 115658 151772 112770 169703 184402 98664 174786 TRUE FALSE FALSE 120377.9791 135501.7339 137077.7278 121976.1037 136661.0468 118674.4628 133444.5677 139177.1204 118464.9598 131215.0669 0.91740973 1.032669015 1.044679784 0.929589159 1.041504227 0.904427103 1.016991195 1.060679415 0.902830465 1 17.00157386 -7.777500914 24.99898318 0.951415332 0.993790328 0.076785404 0.058354846 743.9062927 1157820.414 0.052917178 0.013838331 1.67E-08 7.777500914 0.042374996 NLS(ph)GGVLMGFMLNR ddPTM_HeLa_A486_30min_R1 2 NLSGGVLMGFMLNR 14 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 NLS(1)GGVLMGFMLNR;NLS(1)GGVLMGFMLNR ; 204.05 6.46E-22 213230000 200423 172520 147131 108352 200776 176758 222940 213590 166937 249720 TRUE FALSE FALSE 186374.3827 158848.8869 204104.0635 252248.9318 175592.8019 154951.3951 167158.054 164960.2196 181407.2336 187188.4866 0.995650887 0.848603938 1.090366546 1.34756649 0.93805343 0.827782723 0.892993245 0.881251954 0.969115339 1 17.51413218 -5.977393946 24.99925823 0.902972716 1.066947119 0.26735271 0.123315309 332.6304867 367842.8698 0.041248086 0.046768015 1.05E-06 5.977393946 0.163974404 NLS(ph)GSTLYPVSNIPR ddPTM_HeLa_A485_30min_R1 3 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 NLS(0.986)GS(0.014)T(0.001)LYPVSNIPR;NLS(0.96)GS(0.039)T(0.001)LYPVSNIPR;NLS(0.999)GS(0.001)TLYPVSNIPR ;; 218.43 1.69E-33 595059000 491680 548840 553500 575850 778090 584010 794110 908560 522700 798950 TRUE FALSE FALSE 601052.5197 613022.0637 758262.6831 607307.2274 700620.6276 614587.8605 624441.9112 685734.2354 627601.0955 599786.4686 1.002110836 1.022067179 1.264221057 1.01253906 1.168116762 1.024677769 1.041107034 1.143297276 1.046374215 1 19.19408945 NLS(ph)GSTLYPVSNIPR ddPTM_HeLa_A486_30min_R1 2 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 NLS(0.999)GS(0.001)TLYPVSNIPR;NLS(0.994)GS(0.005)TLYPVSNIPR ; 147.83 6.73E-08 147938000 222330 263960 171047 93144 288170 252880 275740 273970 204890 294580 TRUE FALSE FALSE 206745.8151 243042.8483 237280.9792 216843.9392 252025.0315 221682.2367 206746.9355 211593.0117 222650.0302 220815.2506 0.936284131 1.100661515 1.074567896 0.982015231 1.141338883 1.003926296 0.936289205 0.958235498 1.008309116 1 17.75248029 -6.51639943 24.94497964 0.971925166 1.05035564 0.256925685 0.057137468 365.4059603 1406800.477 0.020516804 0.016497705 3.05E-07 6.51639943 0.078430475 NLS(ph)LVR ddPTM_HeLa_A485_30min_R1 4 NLSLVR 6 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NLS(1)LVR;NLS(1)LVR;NLS(1)LVR;NLS(1)LVR ;;; 78.149 0.022837 746800000 604147 712166 714200 815147 1120851 662790 1162918 1089482 665712 1071638 TRUE FALSE FALSE 738537.4159 795447.6187 978412.3003 859676.4165 1009255.139 697492.6595 914451.0691 822284.8313 799314.2921 804498.3686 0.918009837 0.988749822 1.216176861 1.068586898 1.254514836 0.866990769 1.136672372 1.022108762 0.993556138 1 19.61772997 -7.508035442 21.94900432 1.000462725 1.067960881 0.055089145 0.114319125 424.2272574 627335.4085 0.065987502 0.029761513 3.10E-08 7.508035442 0.067498156 NLS(ph)LVR ddPTM_HeLa_A486_30min_R1 3 NLSLVR 6 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 NLS(1)LVR;NLS(1)LVR;NLS(1)LVR ;; 90.657 0.015585 455529000 803430 812330 562204 358821 851650 878110 1047620 1105480 700070 1013610 TRUE FALSE FALSE 747113.7059 747958.0123 779904.4451 835353.4218 744828.1157 769777.7162 785494.3954 853786.3365 760752.6313 759795.4585 0.983308991 0.98442022 1.026466316 1.099445137 0.980300826 1.013138085 1.033823494 1.123705501 1.001259777 1 19.53525156 -4.815584659 4.537912874 1.039372048 0.983226673 0.185914009 0.042392472 0.298764996 12.57644186 0.011291565 0.026216804 1.53E-05 4.815584659 -0.056145375 NLS(ph)NEELTK ddPTM_HeLa_A485_30min_R1 4 NLSNEELTK 9 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 NLS(1)NEELTK;NLS(1)NEELTK;NLS(1)NEELTK;NLS(1)NEELTK ;;; 234.71 9.67E-16 1942410000 3175140 2629040 1820870 4608160 3753180 2977670 5143500 4622420 2332900 6089700 TRUE FALSE FALSE 3881438.939 2936483.358 2494485.586 4859892.112 3379500.221 3133576.197 4044549.206 3488764.247 2801091.631 4571649.863 0.849023669 0.642324641 0.545642309 1.06304994 0.739229889 0.685436613 0.884702313 0.763130238 0.612709135 1 22.12428348 -10.44900432 3.151051124 1.004488555 0.755272417 0.21202329 0.142299269 177763772.3 227408755 7089742.613 0.037222294 3.56E-11 10.44900432 -0.249216138 NLS(ph)NEELTK ddPTM_HeLa_A486_30min_R1 4 NLSNEELTK 9 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 NLS(1)NEELTK;NLS(1)NEELTK;NLS(1)NEELTK;NLS(1)NEELTK ;;; 181.44 3.46E-08 2081900000 4666970 4295750 1959340 2215450 3987460 5049460 6349500 5767400 3403100 7214500 TRUE FALSE FALSE 4339839.503 3955339.125 2718048.921 5157679.563 3487315.585 4426508.964 4760787.942 4454288.921 3698083.448 5407942.241 0.802493686 0.731394484 0.502603171 0.953723123 0.644850745 0.818520015 0.880332616 0.823656896 0.683824509 1 22.36664831 -6.137320155 0.958002763 0.838385239 0.710386558 0.1436364 0.130608279 1.185187861 2.340885032 0.071788852 0.074543572 7.29E-07 6.137320155 -0.127998681 NLS(ph)PGAVESDVR ddPTM_HeLa_A485_30min_R1 6 NLSPGAVESDVR 12 0 A0A3B3IU78;A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2 A0A3B3IU78 COPA Coatomer subunit alpha;Xenin;Proxenin 1 0 NLS(1)PGAVESDVR;NLS(0.999)PGAVES(0.001)DVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR ;;;;; 199.84 5.08E-17 2503771000 1344107 1995500 2141727 1650350 2619910 1704603 2150310 2311880 1775301 2172340 TRUE FALSE FALSE 1643098.965 2228856.366 2934040.942 1740504.442 2359062.561 1793853.377 1690878.702 1744887.805 2131587.627 1630815.617 1.007532028 1.36671267 1.799124874 1.067260102 1.446553821 1.099973141 1.036830089 1.069947937 1.307068441 1 20.63716225 -6.276195134 23.56687702 1.103014756 1.349702668 0.227012702 0.21592531 581.091812 928075.6526 0.076315986 0.067639191 5.29E-07 6.276195134 0.246687912 NLS(ph)PGAVESDVR ddPTM_HeLa_A486_30min_R1 6 NLSPGAVESDVR 12 0 A0A3B3IU78;A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2 A0A3B3IU78 COPA Coatomer subunit alpha;Xenin;Proxenin 1 0 NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(1)PGAVESDVR ;;;;; 170.92 1.34E-10 2323780000 1585176 1722570 1404205 580778 1901170 1532172 1758770 1750250 1468582 1669910 TRUE FALSE FALSE 1474063.348 1586067.28 1947950.782 1352080.535 1662707.531 1343148.197 1318707.144 1351756.283 1595879.87 1251753.667 1.177598586 1.2670762 1.556177412 1.080149051 1.328302505 1.073013191 1.053487742 1.079890012 1.274915275 1 20.25551925 -6.264750971 24.91282694 1.09858102 1.285072998 0.332041221 0.131561133 343.0424223 2580669.578 0.045267714 0.041544636 5.44E-07 6.264750971 0.186491978 NLS(ph)PPNCTELQIDSCSSSEEIKK ddPTM_HeLa_A486_30min_R1 1 NLSPPNCTELQIDSCSSSEEIKK 23 1 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2;A0A0U1RRA9;A0A0A0MSN1 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLS(1)PPNCTELQIDSCSSSEEIKK 120.93 2.03E-05 97583000 61342 64208 23678 34696 57746 65650 93421 101500 44824 105760 TRUE FALSE FALSE 57042.24257 59119.92424 32846.75572 80774.04144 50502.95822 57550.77048 70046.07769 78390.66573 48709.38041 79277.00762 0.719530723 0.745738595 0.414328905 1.018883581 0.637044204 0.725945292 0.88356107 0.988819685 0.614420018 1 16.27461489 -11.68389637 0.041022469 2.040537718 0.002020556 0.198682854 0.167194122 779.8012059 3.732564187 136.4057924 61.36889838 2.07E-12 11.68389637 -2.038517161 NLS(ph)SDEATNPISR ddPTM_HeLa_A485_30min_R1 2 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NLS(0.822)S(0.178)DEATNPISR;NLS(0.996)S(0.004)DEATNPISR ; 252.82 3.94E-41 1963230000 548210 672610 594980 648420 962800 608710 908060 979160 611010 916440 TRUE FALSE FALSE 670157.4232 751265.8886 815087.8612 683841.5427 866940.2514 640581.1144 714045.5628 739019.4747 733634.1025 687988.3738 0.974082483 1.091974686 1.184740749 0.993972527 1.260108869 0.931092935 1.037874461 1.074174365 1.066346657 1 19.39202466 -6.312521266 24.9999971 1.027532217 1.099185884 0.173118325 0.085927994 716.3241425 350574.0438 0.029469874 0.025990054 4.87E-07 6.312521266 0.071653667 NLS(ph)SDEATNPISR ddPTM_HeLa_A486_30min_R1 2 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NLS(0.916)S(0.084)DEATNPISR;NLS(0.923)S(0.077)DEATNPISR ; 241.39 5.58E-35 1335020000 672210 750480 505630 276170 789150 708320 849260 836340 607280 845650 TRUE FALSE FALSE 625091.5503 691009.2316 701423.4772 642937.7169 690167.4485 620934.6801 636766.1654 645923.6392 659919.5194 633893.7357 0.986114099 1.090102635 1.106531644 1.014267346 1.088774679 0.979556423 1.004531406 1.018977792 1.041057013 1 19.27388149 -6.260907242 24.99999142 1.009742319 1.05934849 0.300448463 0.036786837 63.19492318 2969023.223 0.012450949 0.011749279 5.48E-07 6.260907242 0.049606171 NLSDIGWPVFEIPS(ph)PRPSK ddPTM_HeLa_A485_30min_R1 1 NLSDIGWPVFEIPSPRPSK 19 1 F5H1X6;F5H4R1;J3KNB8;F5H538;Q9Y6R4-2;Q9Y6R4 F5H1X6 MAP3K4 Mitogen-activated protein kinase kinase kinase 4 1 0 NLSDIGWPVFEIPS(0.999)PRPS(0.001)K 112.23 2.32E-05 36074000 58740 54555 44872 74869 80862 50202 69025 62878 54853 98933 TRUE FALSE FALSE 71806.51035 60934.73268 61472.02008 78958.90389 72811.09536 52830.49909 54277.24487 47457.07191 65861.49396 74270.82383 0.966819898 0.820439704 0.827673869 1.063121423 0.980345869 0.711322379 0.730801707 0.63897328 0.886774787 1 16.18050796 -6.260908627 24.99984001 0.767086964 0.927024295 0.248039471 0.115582517 61.60949083 2902017.207 0.039450106 0.037214886 5.48E-07 6.260908627 0.159937332 NLSDIGWPVFEIPS(ph)PRPSK ddPTM_HeLa_A486_30min_R1 2 NLSDIGWPVFEIPSPRPSK 19 1 F5H1X6;F5H4R1;J3KNB8;F5H538;Q9Y6R4-2;Q9Y6R4 F5H1X6 MAP3K4 Mitogen-activated protein kinase kinase kinase 4 1 0 NLSDIGWPVFEIPS(0.999)PRPS(0.001)K;NLSDIGWPVFEIPS(0.999)PRPS(0.001)K ; 104.53 3.77E-05 77209000 80226 78708 51651 36307 80898 90691 96906 88930 69534 95542 TRUE FALSE FALSE 74602.57169 72470.89143 71651.65046 84524.53085 70751.0185 79502.4665 72659.09383 68682.58033 75561.26311 71617.66133 1.041678412 1.011913683 1.000474592 1.180219087 0.987899035 1.11009582 1.01454156 0.959017358 1.055064655 1 16.12802779 -9.949581096 5.355076769 0.999999906 1.039613933 0.037512331 0.060892156 6.73E-08 1.31E-08 0.058165517 0.014107177 1.12E-10 9.949581096 0.039614027 NLSEIENVHGFVSHSHIS(ph)PIK ddPTM_HeLa_A485_30min_R1 1 NLSEIENVHGFVSHSHISPIK 21 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;C9JCP6;A0A590UJ86;A0A590UK13;C9IYP1;A8MUT6;B4E2H8;A0A590UJ95;A0A590UK52;A0A590UJZ4;C9JN61;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 NLSEIENVHGFVS(0.068)HS(0.261)HIS(0.671)PIK 58.26 0.015821 84033000 63214 55813 52085 100700 78438 65279 94025 80025 61793 161500 TRUE FALSE FALSE 77275.73621 62339.84484 71353.40894 106200.986 70628.43731 68696.9075 73935.79064 60398.74328 74194.2883 121241.0222 0.637372853 0.514181122 0.5885253 0.875949279 0.58254571 0.566614387 0.60982487 0.498170852 0.611956968 1 16.8875184 -9.824696239 5.11136499 1.000000202 0.608565753 0.587762932 0.098117765 31878255.93 20424686.41 123.0859379 0.02481064 1.50E-10 9.824696239 -0.391434449 NLSES(ph)PVITK ddPTM_HeLa_A485_30min_R1 3 NLSESPVITK 10 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 NLS(0.003)ES(0.997)PVITK;NLS(0.041)ES(0.959)PVITK;NLS(0.03)ES(0.97)PVITK ;; 90.861 0.0031212 593000000 838610 1244980 1011240 1078160 1499380 1085910 1386530 1568170 990920 1444390 TRUE FALSE FALSE 1025155.901 1390569.581 1385339.757 1137057.151 1350096.463 1142766.568 1090286.539 1183573.849 1189788.555 1084330.155 0.945427826 1.282422678 1.277599586 1.04862633 1.245097221 1.053891717 1.005493146 1.091525347 1.097256725 1 20.04837266 -6.297619352 20.53256723 1.052594609 1.167009349 0.225474014 0.101615845 107.4211611 60961.35726 0.035216223 0.031062053 5.04E-07 6.297619352 0.11441474 NLSES(ph)PVITK ddPTM_HeLa_A486_30min_R1 2 NLSESPVITK 10 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 NLS(0.052)ES(0.948)PVITK;NLS(0.375)ES(0.625)PVITK ; 88.075 0.0035537 347920000 567870 566290 360450 281180 620410 554390 728710 718340 470720 733750 TRUE FALSE FALSE 528065.2455 521415.118 500025.8932 654601.2501 542592.3927 485994.9984 546379.0505 554789.6633 511522.3886 550014.2241 0.960093798 0.94800297 0.909114476 1.190153311 0.98650611 0.883604418 0.993390764 1.008682392 0.930016654 1 19.0691094 -4.538218326 0.00412815 1.196922783 0.763254097 0.001087185 0.079853274 1169843.122 822.0979987 42003.49129 44380.19196 2.90E-05 4.538218326 -0.433668685 NLSFDIPTGSLRDS(ph)R ddPTM_HeLa_A485_30min_R1 4 NLSFDIPTGSLRDSR 15 1 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 NLSFDIPTGSLRDS(0.999)R;NLSFDIPT(0.002)GS(0.002)LRDS(0.996)R;NLSFDIPTGSLRDS(1)R;NLSFDIPTGSLRDS(1)R ;;; 184.6 3.64E-18 515097000 635623 797078 751789 812038 1050815 646729 983720 879306 566100 1021322 TRUE FALSE FALSE 777015.1435 890289.3384 1029907.036 856397.5798 946192.169 680590.7304 773540.1857 663654.8248 679711.0774 766725.2214 1.013420612 1.161158279 1.343254411 1.116955013 1.234069446 0.887659244 1.008888405 0.865570619 0.886511958 1 19.54835011 -6.263656895 24.99544375 0.926271849 1.179330059 0.648375887 0.089795417 125.3123537 1412492.994 0.0312022 0.02884805 5.45E-07 6.263656895 0.253058209 NLSFDIPTGSLRDS(ph)R ddPTM_HeLa_A486_30min_R1 3 NLSFDIPTGSLRDSR 15 1 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 NLSFDIPT(0.005)GS(0.012)LRDS(0.983)R;NLSFDIPTGSLRDS(1)R;NLSFDIPTGSLRDS(1)R ;; 182 4.40E-18 423210000 401871 440516 390099 254309 834223 752492 924650 933930 693097 899340 TRUE FALSE FALSE 373701.9182 405607.9078 541155.78 592044.2041 729586.9725 659657.1878 693292.79 721294.5265 753175.206 674139.4103 0.554339225 0.601667699 0.802735713 0.878222212 1.0822494 0.978517467 1.028411601 1.069948612 1.117239542 1 19.36268744 -5.02488757 1.035894684 1.053535051 0.501389755 0.940184788 0.046344759 0.151674494 0.271178444 0.016658582 0.070811004 9.44E-06 5.02488757 -0.552145296 NLSFKPINGEEEAES(ph)IEEELNIDSHSDLK ddPTM_HeLa_A486_30min_R1 1 NLSFKPINGEEEAESIEEELNIDSHSDLK 29 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 NLSFKPINGEEEAES(1)IEEELNIDSHSDLK 125.02 3.39E-06 40533000 22605 19073 10158 12047 16864 21835 28119 25370 15508 29660 TRUE FALSE FALSE 21020.50623 17561.58602 14091.44964 28046.02482 14748.75987 19141.2197 21083.32879 19593.80482 16852.24593 22232.94295 0.945466657 0.789890302 0.633809464 1.261462546 0.663374161 0.860939541 0.948292308 0.881296051 0.75798539 1 14.44041131 -10.21140117 4.672500725 1.000028772 0.860782754 0.058666934 0.167891175 4.81E-05 8.12E-06 0.155465743 0.037698194 6.15E-11 10.21140117 -0.139246018 NLSGS(ph)TLYPVSNIPR ddPTM_HeLa_A486_30min_R1 1 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 NLS(0.046)GS(0.95)T(0.005)LYPVSNIPR 194.53 1.46E-18 917330000 579930 595480 497700 239200 618520 563860 729360 736940 489430 769890 TRUE FALSE FALSE 539279.9018 548291.9961 690422.7689 556869.6885 540939.4541 494296.6861 546866.4136 569154.8493 531854.1865 577104.5329 0.934457921 0.950073973 1.196356517 0.964937298 0.937333574 0.856511529 0.94760374 0.986224881 0.921590728 1 19.13847314 -5.50749831 24.89274085 0.938200183 1.029502745 0.204999402 0.075064177 1010.330049 1635187.494 0.022020556 0.031507935 3.11E-06 5.50749831 0.091302562 NLSLTDFVGDES(ph)PS(ph)PER ddPTM_HeLa_A485_30min_R1 2 NLSLTDFVGDESPSPER 17 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 2 0 NLSLT(0.008)DFVGDES(0.992)PS(1)PER;NLSLTDFVGDES(1)PS(1)PER ; 138.97 6.29E-08 13793000 58295 60967 57292 71761 75359 56166 82727 67135 59081 86362 TRUE FALSE FALSE 71262.52163 68096.56031 78486.69492 75681.12172 67855.99336 59106.76491 65051.70063 50670.03599 70938.01478 64833.54277 1.099161307 1.050329157 1.210587785 1.167314302 1.046618624 0.911669521 1.003364892 0.781540447 1.094156076 1 15.98445279 -6.022716718 3.932937858 0.948285615 1.13076859 0.481048094 0.084619861 0.181916323 6.241664368 0.027401273 0.029089124 9.49E-07 6.022716718 0.182482975 NLSLTDFVGDES(ph)PS(ph)PER ddPTM_HeLa_A486_30min_R1 2 NLSLTDFVGDESPSPER 17 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 2 0 NLSLTDFVGDES(1)PS(1)PER;NLSLTDFVGDES(1)PS(1)PER ; 117.29 0.00017312 78309000 91038 104245 64148 36262 93763 93829 109688 92500 82151 117402 TRUE FALSE FALSE 84656.70632 95984.24655 88987.82354 84419.76858 82002.37023 82253.33196 82242.90224 71439.76926 89271.91482 88003.77504 0.96196676 1.090683286 1.01118189 0.959274401 0.931805144 0.934656859 0.934538345 0.811780736 1.014410061 1 16.42527779 -5.351271101 2.477207049 0.92850378 1.030880707 0.27843079 0.05889103 0.31683502 3.793140794 0.017082027 0.029040554 4.45E-06 5.351271101 0.102376927 NLSLTDFVGDESPS(ph)PER ddPTM_HeLa_A485_30min_R1 6 NLSLTDFVGDESPSPER 17 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDES(0.001)PS(0.999)PER ;;;;; 415.76 9.00E-154 1514444000 969266 1184434 1103720 1120586 1408659 983832 1495570 1237674 955550 1669634 TRUE FALSE FALSE 1184875.878 1322943.253 1512031.958 1181800.776 1268407.964 1035343.922 1176029.252 934132.5109 1147320.12 1253424.971 0.945310573 1.055462659 1.206320276 0.942857214 1.011953641 0.826011884 0.938252611 0.745264003 0.915348064 1 20.25744421 -5.937209788 1.767239223 0.872563305 1.05987003 0.369088008 0.0943544 0.336395046 2.145359418 0.034512832 0.039913291 1.16E-06 5.937209788 0.187306725 NLSLTDFVGDESPS(ph)PER ddPTM_HeLa_A486_30min_R1 7 NLSLTDFVGDESPSPER 17 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 NLSLTDFVGDES(0.006)PS(0.994)PER;NLSLTDFVGDES(0.004)PS(0.996)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER;NLSLTDFVGDESPS(1)PER ;;;;;; 469.1 9.44E-217 1755929000 1431879 1316996 976388 556217 1402963 1346129 1577697 1543453 1266716 1713807 TRUE FALSE FALSE 1331511.676 1212632.441 1354471.582 1294901.286 1226990.298 1180057.29 1182940.523 1192042.445 1376515.963 1284658.572 1.03647125 0.943933639 1.05434363 1.007973102 0.955110039 0.91857659 0.920820947 0.927906037 1.071503349 1 20.29295355 -5.758890064 22.47516099 0.957452711 1.009031618 0.148159767 0.050591039 32.35144857 285202.1032 0.015257993 0.018759724 1.74E-06 5.758890064 0.051578907 NLSLTDFVGDESPS(ph)PERLK ddPTM_HeLa_A485_30min_R1 1 NLSLTDFVGDESPSPERLK 19 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 NLSLTDFVGDES(0.003)PS(0.997)PERLK 176.14 1.70E-13 55870000 18825 27140 19388 16340 47091 36403 58422 88113 21606 43432 TRUE FALSE FALSE 23012.5563 30313.78691 26560.428 17232.61282 42402.45469 38309.00479 45939.66244 66503.14859 25942.12602 32605.20171 0.705794018 0.929722416 0.814607075 0.528523423 1.300481287 1.174935372 1.408967282 2.039648434 0.795643783 1 14.99281452 -5.816070751 8.736611863 1.340699947 0.763381913 0.40120835 0.320005291 0.281730352 41.46947534 0.098197482 0.111738133 1.53E-06 5.816070751 -0.577318035 NLSS(ph)DEATNPISR ddPTM_HeLa_A485_30min_R1 1 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NLS(0.435)S(0.564)DEATNPISR 242.93 4.80E-35 472880000 336340 370840 325600 446830 512580 351660 522470 561860 358170 602900 TRUE FALSE FALSE 411157.6726 414206.5121 446052.9893 471239.1915 461545.7354 370072.3738 410840.0163 424062.954 430051.4337 452608.1256 0.908418673 0.91515483 0.985516972 1.04116379 1.019746905 0.817644123 0.907716837 0.936931818 0.950162866 1 18.78790296 NLTANDPSQEYVAS(ph)EGEEDPEVEFLK ddPTM_HeLa_A485_30min_R1 4 NLTANDPSQEYVASEGEEDPEVEFLK 26 0 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 0 NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK ;;; 263.16 2.17E-62 430896000 377941 338381 277662 500355 536248 367453 631580 639150 335688 662630 TRUE FALSE FALSE 462012.6716 377951.7144 380380.7283 527688.1267 482857.2662 386692.2709 496637.7735 482397.4604 403057.5025 497448.5358 0.928764763 0.759780535 0.76466348 1.060789386 0.970667781 0.77735131 0.998370158 0.969743452 0.810249651 1 18.92418775 -5.236377027 24.97943419 0.93656868 0.811940682 0.270476115 0.092437773 1043.273745 1039820.772 0.025115787 0.043479713 5.80E-06 5.236377027 -0.124627998 NLTANDPSQEYVAS(ph)EGEEDPEVEFLK ddPTM_HeLa_A486_30min_R1 4 NLTANDPSQEYVASEGEEDPEVEFLK 26 0 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 0 NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK;NLTANDPSQEYVAS(1)EGEEDPEVEFLK ;;; 275.24 7.53E-76 467909000 558373 500516 275419 266613 504177 560684 763530 728540 423832 767520 TRUE FALSE FALSE 519233.9361 460853.2893 382068.6128 620688.5379 440938.4194 491512.5087 572486.7182 562667.3459 460570.099 575327.9963 0.902500729 0.801027053 0.664088338 1.078842924 0.766412242 0.854317036 0.995061464 0.97799403 0.800534829 1 19.13402515 -6.074585562 0.727272203 0.939770025 0.815524665 0.121587869 0.114730737 1.544555304 1.817841829 0.077783753 0.094973174 8.42E-07 6.074585562 -0.124245359 NLTEQNSYSNIPHEGKHT(ph)PLYER ddPTM_HeLa_A485_30min_R1 1 NLTEQNSYSNIPHEGKHTPLYER 23 1 Q9NZB2;Q9NZB2-4;Q9NZB2-6;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5;Q5T035 Q9NZB2 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 1 0 NLTEQNSYSNIPHEGKHT(1)PLYER 253.49 6.21E-61 535310000 266920 249040 168990 236490 338370 249170 367010 333450 214580 392860 TRUE FALSE FALSE 326295.4331 278163.0616 231506.4333 249408.8499 304680.6947 262216.1559 288595.3153 251670.8647 257644.2378 294927.2321 1.106359121 0.943158282 0.784961198 0.845662329 1.033070743 0.889087637 0.97853058 0.853332067 0.873585786 1 18.16999951 -4.297409492 4.097900067 0.904138022 1.117231406 0.397412831 0.072833309 0.201087318 6.913651635 0.018577375 0.116317649 5.04E-05 4.297409492 0.213093384 NLTEQNSYSNIPHEGKHT(ph)PLYER ddPTM_HeLa_A486_30min_R1 2 NLTEQNSYSNIPHEGKHTPLYER 23 1 Q9NZB2;Q9NZB2-4;Q9NZB2-6;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5;Q5T035 Q9NZB2 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 1 0 NLTEQNSY(0.003)S(0.27)NIPHEGKHT(0.698)PLY(0.029)ER;NLTEQNSYSNIPHEGKHT(1)PLYER ; 251.19 1.15E-49 1197870000 641650 500470 326880 91686 552770 529390 698360 659890 478280 585700 TRUE FALSE FALSE 596673.6485 460810.9345 453456.6902 213449.6416 483436.4322 464079.2442 523622.9415 509647.4523 519737.6955 439036.9077 1.359051228 1.04959498 1.032844123 0.486176988 1.101129367 1.057039251 1.192662695 1.160830544 1.18381322 1 18.7439827 -5.971583268 24.99961851 1.127483833 0.965796867 0.089643149 0.206385448 493.6077329 434249.2775 0.067112551 0.076097344 1.07E-06 5.971583268 -0.161686966 NLTMS(ph)PLHK ddPTM_HeLa_A485_30min_R1 2 NLTMSPLHK 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 NLT(0.002)MS(0.998)PLHK;NLT(0.001)MS(0.999)PLHK ; 89.189 0.0027023 213453000 169461 182382 147145 252680 269250 194071 282680 276070 149550 329250 TRUE FALSE FALSE 207157.0148 203709.9884 201580.0587 266483.2686 242442.5246 204232.2575 222283.1087 208363.3996 179563.3132 247174.0344 0.838101847 0.824156101 0.815538975 1.078119994 0.980857578 0.826269062 0.899297975 0.842982557 0.726465115 1 17.91516767 -9.751257804 13.80152654 1 0.87537029 0.147817076 0.092753333 0 0 0.096035243 0.023291968 1.77E-10 9.751257804 -0.12462971 NLTMS(ph)PLHK ddPTM_HeLa_A486_30min_R1 2 NLTMSPLHK 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 NLT(0.014)MS(0.986)PLHK;NLT(0.001)MS(0.999)PLHK ; 110.31 0.00067713 260833000 195027 185167 105497 95002 192673 230353 253448 257758 178111 286240 TRUE FALSE FALSE 181356.6144 170493.6926 146348.2637 221169.4571 168506.1557 201934.3889 190032.6297 199072.1302 193549.8049 214563.6409 0.845234606 0.794606634 0.68207392 1.030787212 0.785343477 0.941139832 0.885670232 0.927799926 0.902062456 1 17.7110461 -5.146784327 0.184138295 1.018792102 0.651013194 0.312935227 0.083018188 14.12061915 0.679393988 0.259606618 1.268859019 7.13E-06 5.146784327 -0.367778908 NLVS(ph)PAYCTQESR ddPTM_HeLa_A485_30min_R1 4 NLVSPAYCTQESR 13 0 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 0 NLVS(0.999)PAYCT(0.001)QESR;NLVS(1)PAYCTQESR;NLVS(1)PAYCTQESR;NLVS(1)PAYCTQESR ;;; 209.42 7.65E-22 1337550000 463982 558637 502946 603876 785025 521466 790900 770485 517185 835000 TRUE FALSE FALSE 567193.1952 623964.7377 689006.6547 636864.2168 706865.1546 548769.1534 621917.7539 581522.3457 620979.2856 626849.867 0.904831005 0.995397416 1.099157376 1.015975675 1.127646653 0.875439531 0.992131907 0.927689988 0.990634789 1 19.25776043 -6.270059965 24.99737062 0.954844415 1.02997527 0.227694506 0.065674507 981.7236441 2846728.016 0.023031633 0.020631121 5.37E-07 6.270059965 0.075130855 NLVS(ph)PAYCTQESR ddPTM_HeLa_A486_30min_R1 1 NLVSPAYCTQESR 13 0 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 0 NLVS(1)PAYCTQESR 243.1 4.72E-35 322130000 180110 184480 167870 57278 197340 187680 227760 180380 151670 234000 TRUE FALSE FALSE 167485.2191 169861.1329 232873.7597 133346.0787 172587.7771 164525.9498 170772.039 139311.4117 164816.8777 175404.8769 0.954849272 0.968394585 1.327635604 0.760218764 0.983939444 0.937978195 0.973587747 0.794227698 0.939636803 1 17.42032934 -5.288419349 24.99823324 0.910770813 1.072103477 0.295789178 0.120367766 931.002664 862616.4793 0.03337252 0.049513593 5.15E-06 5.288419349 0.161332664 NLVYDQS(ph)PNR ddPTM_HeLa_A485_30min_R1 3 NLVYDQSPNR 10 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2T8 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 NLVYDQS(1)PNR;NLVYDQS(1)PNR;NLVYDQS(1)PNR ;; 136.38 4.03E-05 1169600000 1292870 1426770 1369830 1584370 1975500 1225650 1876560 1696250 1270650 2169690 TRUE FALSE FALSE 1580464.471 1593618.34 1876587.12 1670920.121 1778812.284 1289823.139 1475617.626 1280242.028 1525657.8 1628826.213 0.970308839 0.978384512 1.152110093 1.025843093 1.092082304 0.791872778 0.905939267 0.78599056 0.936660883 1 20.63540125 -6.254675809 24.99806572 0.872082517 1.045140238 0.513835728 0.077200725 408.39692 1509430.906 0.025028559 0.024484597 5.56E-07 6.254675809 0.173057721 NLVYDQS(ph)PNR ddPTM_HeLa_A486_30min_R1 2 NLVYDQSPNR 10 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2T8 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 NLVYDQS(1)PNR;NLVYDQS(1)PNR ; 136.01 4.27E-05 1194580000 1333870 1298250 1008390 455800 1316320 1291320 1539060 1532380 1109570 1527230 TRUE FALSE FALSE 1240372.601 1195371.942 1398865.614 1061125.435 1151214.871 1132010.068 1153970.909 1183490.526 1205748.421 1144801.667 1.083482525 1.04417383 1.221928351 0.92690766 1.005602022 0.988826362 1.008009459 1.03379525 1.053237827 1 20.12666625 -5.273755555 24.99903141 1.003557038 1.109292803 0.501009956 0.052062212 649.9574171 1319264.107 0.01462901 0.021875012 5.32E-06 5.273755555 0.105735765 NLY(ph)S(ph)LDLS(ph)DLPLDK ddPTM_HeLa_A485_30min_R1 1 NLYSLDLSDLPLDK 14 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 3 0 NLY(1)S(1)LDLS(1)DLPLDK 49.606 0.019923 748090000 482840 1575100 666000 58606 386790 870480 396190 684470 484450 70296 TRUE FALSE FALSE 590246.0922 1759294.243 912381.1146 61807.49738 348279.8295 916056.9868 311540.7699 516602.6593 581674.6714 52772.5009 11.18472845 33.33732935 17.28894972 1.171206525 6.599646095 17.35860479 5.903467992 9.78923967 11.02230634 1 15.68749873 -5.007970186 24.52345873 8.29401943 23.02405773 0.450263706 6.714924054 239.5431221 737060.6642 1.695839732 3.292924099 9.82E-06 5.007970186 14.7300383 NLYIISVK ddPTM_HeLa_A485_30min_R1 2 NLYIISVK 8 0 C9JD32;J3KT29;P62829;B9ZVP7 C9JD32 RPL23 60S ribosomal protein L23 0 0 ; ; 152.47 0.00044203 71997000 133242 134804 125886 179269 242940 150598 232950 241900 138820 318530 FALSE FALSE TRUE 162881.2232 150568.1552 172456.47 189062.0115 218752.0406 158483.0784 183178.3295 182573.6457 166679.9007 239126.3331 0.681151344 0.629659449 0.721193972 0.790636519 0.914796952 0.662758787 0.766031608 0.763502887 0.697036995 1 17.86741349 -14 0.290709453 3.017246681 0.724524178 0.513308575 0.076615689 223.3264807 2.106427063 273.5557507 0.088293894 1.00E-14 14 -2.292722503 NLYIISVK ddPTM_HeLa_A486_30min_R1 2 NLYIISVK 8 0 C9JD32;J3KT29;P62829;B9ZVP7 C9JD32 RPL23 60S ribosomal protein L23 0 0 ; ; 160.88 0.00023174 70198000 187752 168684 106607 91925 190485 187025 255826 232204 172797 270784 FALSE FALSE TRUE 174591.5544 155316.8655 147888.0854 214006.0456 166592.5951 163951.757 191815.6289 179336.2182 187775.1831 202977.9239 0.860150459 0.765190926 0.72859197 1.054331631 0.820742433 0.807731964 0.945007345 0.883525729 0.925101506 1 17.6309633 -1.000000041 0.04899261 1.27124366 0.149663673 0.279300366 0.083303684 684.8921849 2.540953546 13.9189341 58.56532579 0.099999991 1.000000041 -1.121579987 NLYPSSS(ph)PYTR ddPTM_HeLa_A485_30min_R1 1 NLYPSSSPYTR 11 0 Q9Y2Z0-2;Q9Y2Z0 Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog 1 0 NLYPS(0.002)S(0.027)S(0.972)PYTR 155.39 3.45E-07 858150000 782620 922130 913770 907220 1446400 789340 1226300 1234900 770840 1338300 TRUE FALSE FALSE 956711.119 1029965.082 1251811.548 956779.1314 1302391.337 830668.6218 964290.9871 932038.8388 925540.5174 1004686.44 0.952248464 1.025160728 1.245972374 0.952316159 1.29631623 0.826793902 0.959792975 0.92769127 0.92122326 1 19.93831388 -6.28810835 24.98238229 0.924624288 1.091082901 0.357695922 0.112026136 834.5837945 781800.4868 0.037855114 0.033394653 5.15E-07 6.28810835 0.166458613 NLYPSSS(ph)PYTR ddPTM_HeLa_A486_30min_R1 1 NLYPSSSPYTR 11 0 Q9Y2Z0-2;Q9Y2Z0 Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog 1 0 NLYPS(0.051)S(0.024)S(0.923)PYT(0.003)R 120.53 0.00016197 555580000 957460 862830 633400 393050 973110 886020 1066400 1065100 774940 1052000 TRUE FALSE FALSE 890346.9983 794456.2084 878669.443 915040.2636 851053.4699 776711.8608 799575.4408 822599.981 842112.4232 788572.3526 1.129061899 1.007461403 1.114253423 1.160375786 1.079233208 0.984959539 1.013953175 1.043150927 1.067894937 1 19.5888836 -6.064175668 7.331423588 1.02473182 1.099599173 0.454760587 0.042170579 0.287945066 28.95622244 0.014587645 0.014671796 8.63E-07 6.064175668 0.074867352 NMAEQIIQEIYSQIQSK ddPTM_HeLa_A485_30min_R1 1 NMAEQIIQEIYSQIQSK 17 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 62.287 0.02606 7058300 2093.7 2307.2 1356.7 1825.7 3260.4 2289.1 3790.8 2555.1 1859.2 3113.3 FALSE FALSE TRUE 2559.436342 2577.00697 1858.599787 1925.433368 2935.783128 2408.953736 2980.864612 1928.457719 2232.324386 2337.211606 1.095081137 1.10259891 0.795221016 0.82381645 1.256104976 1.030695608 1.275393552 0.825110449 0.955122925 1 11.19057264 NMAEQIIQEIYSQIQSK ddPTM_HeLa_A486_30min_R1 1 NMAEQIIQEIYSQIQSK 17 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 50.387 0.030117 5609500 1511.1 1363.4 842.56 469.34 1473.7 1330.5 1074.2 1247 802.84 1756.1 FALSE FALSE TRUE 1405.179693 1255.359219 1168.821797 1092.647239 1288.854804 1166.356438 805.4237983 963.0853218 872.4308176 1316.36113 1.067472794 0.953658681 0.887918801 0.830051279 0.979104271 0.886045942 0.61185626 0.731626983 0.66275948 1 10.36233962 -6.59646253 7.043485705 0.730032204 0.934606064 0.392128988 0.111604647 0.209776973 16.59130124 0.041362012 0.031946115 2.53E-07 6.59646253 0.20457386 NMAPGAVCS(ph)PGESK ddPTM_HeLa_A486_30min_R1 2 NMAPGAVCSPGESK 14 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 NMAPGAVCS(0.995)PGES(0.005)K;NMAPGAVCS(0.999)PGES(0.001)K ; 73.834 0.0016109 0 186917 203610 105146 119823 195058 245820 313230 302510 159173 312740 TRUE FALSE FALSE 173815.0835 187475.2021 145861.3471 278953.9995 170592.0068 215493.2277 234856.541 233635.0767 172970.2438 234427.8684 0.741443774 0.799713803 0.622201397 1.189935315 0.727695081 0.919230419 1.001828591 0.996618185 0.737839938 1 17.83878456 -5.227973209 24.99695277 0.931867403 0.728979084 0.359888559 0.132808641 732.6329115 547226.2152 0.034542994 0.059825536 5.92E-06 5.227973209 -0.202888319 NMAPSQQS(ph)PVR ddPTM_HeLa_A485_30min_R1 6 NMAPSQQSPVR 11 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR ;;;;; 263.89 1.38E-27 8577010000 2675520 3506920 3188500 3148150 4945340 3311060 4705900 5350540 3135220 4536710 TRUE FALSE FALSE 3270680.194 3917023.788 4368058.835 3320125.463 4452964.585 3484421.982 3700446.021 4038311.676 3764429.896 3405791.689 0.960328902 1.150106685 1.282538462 0.974846898 1.307468275 1.023087229 1.086515665 1.18571893 1.105302449 1 21.69955877 NMAPSQQS(ph)PVR ddPTM_HeLa_A486_30min_R1 8 NMAPSQQSPVR 11 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 NMAPS(0.011)QQS(0.989)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPS(0.003)QQS(0.997)PVR ;;;;;;; 267.37 6.98E-28 9829910000 5843650 5758670 4575070 1811713 6563700 5297060 6136010 6367990 4912870 6383590 TRUE FALSE FALSE 5434040.312 5302332.016 6346659.629 4217759.423 5740419.542 4643562.594 4600715.398 4918137.689 5338721.527 4785097.514 1.135617466 1.108092782 1.326338619 0.881436462 1.199645258 0.970421727 0.961467428 1.027803023 1.115697541 1 22.19011689 -5.261384265 25 1.026197993 1.18182393 0.380797849 0.097721959 5.458900957 2475492.097 0.026286656 0.042023491 5.48E-06 5.261384265 0.155625938 NMGGPYGGGNYGPGGS(ph)GGSGGYGGR ddPTM_HeLa_A485_30min_R1 1 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 NMGGPYGGGNYGPGGS(0.685)GGS(0.315)GGYGGR 145.63 4.68E-09 974130000 184710 232070 214950 240530 370420 212960 334910 325420 195510 351470 TRUE FALSE FALSE 225798.1023 259208.5678 294468.9498 253669.5448 333539.6842 224110.2563 263353.7425 245610.2348 234747.0637 263854.9973 0.855765873 0.982390216 1.116025669 0.961397538 1.264102206 0.849369004 0.998100264 0.930853072 0.889682083 1 18.00938578 NMGGPYGGGNYGPGGSGGS(ph)GGYGGR ddPTM_HeLa_A485_30min_R1 5 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGS(0.016)GGS(0.984)GGYGGR;NMGGPYGGGNYGPGGS(0.012)GGS(0.988)GGYGGR;NMGGPYGGGNYGPGGS(0.409)GGS(0.591)GGYGGR ;;;; 418.43 1.70E-190 3980390000 816825 1053687 967127 1018929 1500765 835212 1359960 1409283 909924 1388103 TRUE FALSE FALSE 998524.9032 1176906.529 1324907.523 1074590.511 1351343.567 878942.4088 1069393.436 1063654.135 1092537.4 1042074.468 0.958208778 1.129388124 1.271413477 1.031203186 1.296782148 0.843454509 1.026215946 1.020708373 1.048425457 1 19.99102695 -6.263871992 24.99989201 0.991458581 1.138499548 0.328828477 0.106820794 273.6820224 2812607.701 0.03608555 0.033334154 5.45E-07 6.263871992 0.147040967 NMGGPYGGGNYGPGGSGGS(ph)GGYGGR ddPTM_HeLa_A486_30min_R1 6 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR;NMGGPYGGGNYGPGGS(0.056)GGS(0.944)GGYGGR;NMGGPYGGGNYGPGGS(0.081)GGS(0.919)GGYGGR ;;;;; 387.27 4.70E-172 4569700000 1151200 1062660 737930 414239 1061890 1035990 1296250 1324010 893263 1308690 TRUE FALSE FALSE 1070506.825 978450.9515 1023676.258 964369.3265 928697.8545 908180.087 971914.5397 1022561.826 970691.7561 980985.5059 1.091256515 0.997416318 1.04351823 0.983061748 0.946698854 0.92578339 0.990753211 1.042382196 0.989506726 1 19.9038723 -2.526865071 0.860156741 0.984003262 3.01932302 0.453281702 0.033758777 40.13742226 1.904035595 0.012826842 141.8824643 0.002972589 2.526865071 2.035319758 NMLAFSSPAAGGVCEPLKS(ph)PQR ddPTM_HeLa_A485_30min_R1 2 NMLAFSSPAAGGVCEPLKSPQR 22 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 NMLAFSSPAAGGVCEPLKS(1)PQR;NMLAFSSPAAGGVCEPLKS(1)PQR ; 183.48 8.21E-20 802530000 334970 285740 188587 548680 349360 263420 475550 347380 220030 677450 TRUE FALSE FALSE 409482.9209 319154.8074 258353.1791 578652.9991 314576.4917 277212.2639 373944.8576 262184.5103 264188.0028 508574.1825 0.805158687 0.627548189 0.507995073 1.13779468 0.618545932 0.545077342 0.735280851 0.515528549 0.519467979 1 18.9560987 -10.14530694 4.957566112 1.000019206 0.668381249 0.228868267 0.182797751 3.92E-05 6.76E-06 0.178768367 0.043355189 7.16E-11 10.14530694 -0.331637957 NMLAFSSPAAGGVCEPLKS(ph)PQR ddPTM_HeLa_A486_30min_R1 2 NMLAFSSPAAGGVCEPLKSPQR 22 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 NMLAFSSPAAGGVCEPLKS(1)PQR;NMLAFSSPAAGGVCEPLKS(1)PQR ; 225.8 2.05E-36 1144240000 651810 545670 248050 283830 396580 624450 799600 693310 467320 1096820 TRUE FALSE FALSE 606121.485 502429.1219 344101.603 660770.584 346837.2384 547411.7079 599531.6227 535458.4479 507827.6739 822169.1329 0.73722238 0.611101903 0.418528973 0.803691792 0.421856312 0.665813986 0.729207165 0.651275299 0.617668134 1 19.64907568 -13.99995962 0.28884151 3.91187423 0.603609099 0.468597505 0.118891135 210.8444816 1.995118539 369.3452723 0.125031492 1.00E-14 13.99995962 -3.30826513 NMNLEEK ddPTM_HeLa_A485_30min_R1 1 NMNLEEK 7 0 Q8IXS2;Q8IXS2-2 Q8IXS2 CCDC65 Coiled-coil domain-containing protein 65 0 0 81.784 0.028588 83083000 118690 68822 80606 259630 162480 84469 157760 131410 127040 359740 FALSE FALSE TRUE 145092.181 76870.13423 110425.5137 273812.9295 146302.9207 88891.66623 124053.2872 99181.49146 152535.7627 270063.4385 0.537252217 0.284637323 0.408887313 1.013883741 0.541735384 0.329151057 0.459348692 0.367252569 0.564814562 1 18.04293881 -8.036655693 21.4495962 1.000000006 0.49362984 0.382251575 0.192338251 1003.603414 587273.5701 0.19766476 0.051036822 9.19E-09 8.036655693 -0.506370166 NMNLEEK ddPTM_HeLa_A486_30min_R1 1 NMNLEEK 7 0 Q8IXS2;Q8IXS2-2 Q8IXS2 CCDC65 Coiled-coil domain-containing protein 65 0 0 91.906 0.018215 58961000 77699 139920 135960 103100 178440 278690 271240 215280 171310 188870 FALSE FALSE TRUE 72252.70134 128832.2296 188607.3531 240022.0104 156058.3913 244308.0613 203372.8831 166265.4435 186159.2887 141575.7227 0.510346689 0.909988148 1.332201239 1.695361365 1.102296272 1.725635276 1.436495462 1.174392335 1.314909684 1 17.11121437 -4.548219876 2.467454553 1.376908209 0.512209547 0.594163484 0.221979088 0.211759776 2.292487336 0.057951376 0.295725938 2.83E-05 4.548219876 -0.864698663 NMPGLSAATLASLGGTS(ph)SR ddPTM_HeLa_A485_30min_R1 1 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 NMPGLSAATLASLGGT(0.114)S(0.443)S(0.443)R 172.81 8.63E-13 498530000 275160 375160 322340 333880 440240 278200 509510 472280 221730 419260 TRUE FALSE FALSE 336368.3927 419031.6985 441586.9797 352119.019 396408.1598 292766.1218 400649.0262 356452.5895 266229.1772 314746.1979 1.068697239 1.331332043 1.402993849 1.118739547 1.259453371 0.930165714 1.272927295 1.132508008 0.845853513 1 18.26382942 -6.896525159 0.589953153 0.960590796 1.260512634 0.32750146 0.140447816 0.98270097 0.698263202 0.131548213 0.091068302 1.27E-07 6.896525159 0.299921838 NMPGLSAATLASLGGTS(ph)SR ddPTM_HeLa_A486_30min_R1 2 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 NMPGLSAATLASLGGT(0.11)S(0.445)S(0.445)R;NMPGLSAATLASLGGT(0.153)S(0.695)S(0.153)R ; 217.73 1.33E-34 840750000 914230 914150 715090 384080 1036210 949610 1165320 1029830 769990 1171980 TRUE FALSE FALSE 850147.1981 841709.4247 991991.9988 894157.6503 906238.8795 832456.7731 873744.6105 795360.19 836733.3532 878508.5797 0.967716443 0.958111786 1.12917736 1.017813225 1.031565201 0.94757956 0.994577208 0.905352786 0.95244756 1 19.74469685 -6.261268688 24.99880356 0.956237582 1.023236358 0.270648739 0.049708763 20.97099176 3071467.951 0.017557931 0.016520367 5.48E-07 6.261268688 0.066998776 NMPGLSAATLASLGGTSS(ph)R ddPTM_HeLa_A485_30min_R1 1 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-2;Q32MZ4;Q32MZ4-3;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 NMPGLSAATLASLGGT(0.064)S(0.215)S(0.721)R 277.8 1.66E-69 527120000 364380 472650 388410 415720 610460 374180 635280 555860 321130 610510 TRUE FALSE FALSE 445435.0739 527922.306 532099.0221 438429.7309 549680.4589 393771.4862 499547.2382 419534.4634 385577.8454 458321.0926 0.971884299 1.151861249 1.160974327 0.956599506 1.19933485 0.859160734 1.089950356 0.915372367 0.841283222 1 18.80599916 -6.552981071 1.076241163 0.924434814 1.088616953 0.259705069 0.105208355 0.662198151 1.569815997 0.063975641 0.043950661 2.80E-07 6.552981071 0.164182139 NMPNKQPESS(ph)L ddPTM_HeLa_A485_30min_R1 2 NMPNKQPESSL 11 1 Q9Y6M5 Q9Y6M5 SLC30A1 Zinc transporter 1 1 0 NMPNKQPES(0.231)S(0.769)L;NMPNKQPES(0.074)S(0.926)L ; 108.7 0.0082221 518470000 993780 832760 389550 1418870 712850 809180 1443760 1324180 732000 2700510 TRUE FALSE FALSE 1214842.932 930144.038 533660.7555 1496379.275 641876.151 851547.4136 1135288.882 999422.7788 878905.6857 2027322.556 0.599235148 0.458804168 0.263234261 0.738106164 0.316612741 0.420035485 0.559994204 0.492976698 0.433530265 1 20.95114422 -10.49438405 3.007055815 1.015842993 0.473451503 0.596566492 0.129300308 45369868.05 52327815.72 5957658.589 0.030644258 3.20E-11 10.49438405 -0.542391491 NMS(ph)PDEIKIPPEPPGR ddPTM_HeLa_A486_30min_R1 3 NMSPDEIKIPPEPPGR 16 1 J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3;J3QQJ0;Q9UHR5-2;Q9UHR5 J3KS14 SAP30BP SAP30-binding protein 1 0 NMS(1)PDEIKIPPEPPGR;NMS(1)PDEIKIPPEPPGR;NMS(1)PDEIKIPPEPPGR ;; 115.74 5.94E-05 286432000 550137 522213 309311 253493 556214 517675 681020 602865 360444 634320 TRUE FALSE FALSE 511575.2372 480830.94 429084.5028 590144.5148 486448.4536 453809.5218 510621.5929 465605.8 391687.5761 475482.1433 1.075908411 1.011249206 0.902419805 1.24114969 1.023063559 0.954419694 1.073902775 0.979228782 0.823769266 1 18.85903164 -7.526571951 24.23111447 0.908422692 1.036849039 0.235748721 0.092682891 109.7754274 720181.7718 0.060863405 0.023262642 2.97E-08 7.526571951 0.128426347 NMS(ph)PDLR ddPTM_HeLa_A485_30min_R1 2 NMSPDLR 7 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 NMS(1)PDLR;NMS(1)PDLR ; 95.775 0.0055112 563830000 911110 887550 864580 1058470 1182920 764800 1066660 808110 802910 1494020 TRUE FALSE FALSE 1113783.276 991341.2518 1184424.12 1116291.536 1065144.331 804843.7454 838759.3772 609919.7554 964046.6723 1121588.309 0.993041089 0.883872668 1.056023953 0.995277435 0.949674959 0.717592845 0.747831776 0.543800029 0.859537019 1 20.09711179 -6.210822453 5.123496502 0.743392113 0.97846316 0.418134604 0.116519018 0.177408765 10.67109799 0.03771834 0.037181908 6.15E-07 6.210822453 0.235071047 NMS(ph)PDLR ddPTM_HeLa_A486_30min_R1 4 NMSPDLR 7 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 NMS(1)PDLR;NMS(1)PDLR;NMS(1)PDLR;NMS(1)PDLR ;;; 93.325 0.006067 1771150000 3420470 3473550 2252040 1156070 3137150 3453590 3635680 3440860 2960840 3841740 TRUE FALSE FALSE 3180712.716 3198293.248 3124090.2 2691389.385 2743659.394 3027521.179 2725994.41 2657451.291 3217487.995 2879743.298 1.104512586 1.110617481 1.084850237 0.934593506 0.952744432 1.051316338 0.94661021 0.922808395 1.117282918 1 21.45750878 -5.133179753 5.611538704 0.985674245 1.105043919 0.453895998 0.055787414 0.196070083 8.102324116 0.014985919 0.026508738 7.36E-06 5.133179753 0.119369674 NMS(ph)PDLRQDFNMMEQR ddPTM_HeLa_A485_30min_R1 3 NMSPDLRQDFNMMEQR 16 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 NMS(1)PDLRQDFNMMEQR;NMS(1)PDLRQDFNMMEQR;NMS(1)PDLRQDFNMMEQR ;; 145.04 3.82E-08 267343000 137265 242450 192757 129022 279516 234900 330965 410284 162275 214450 TRUE FALSE FALSE 167799.1257 270802.4185 264065.8356 136070.1452 251686.4056 247199.0008 260251.624 309661.2057 194842.104 160991.5617 1.042285223 1.682090761 1.640246438 0.84520048 1.563351538 1.535477998 1.616554441 1.923462339 1.210262836 1 17.29662555 NMS(ph)PDLRQDFNMMEQR ddPTM_HeLa_A486_30min_R1 1 NMSPDLRQDFNMMEQR 16 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 NMS(1)PDLRQDFNMMEQR 63.578 0.0091987 31143000 36232 29457 26183 13884 41356 26243 34282 35073 23553 41855 TRUE FALSE FALSE 33692.3239 27122.72004 36321.75881 32322.65366 36168.74485 23005.40548 25704.281 27087.64354 25594.593 31374.23557 1.073885094 0.864490227 1.157693826 1.030229201 1.152816768 0.733257881 0.819279913 0.863372224 0.815783796 1 14.93729269 -6.261526551 25 0.836108348 1.049431034 0.530480913 0.098212818 6.297156488 1805757.903 0.032704426 0.030688344 5.48E-07 6.261526551 0.213322685 NMSVHLSPCFR ddPTM_HeLa_A485_30min_R1 2 NMSVHLSPCFR 11 0 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 0 ; ; 106.67 0.0019176 38069000 25927 58077 71488 20507.5 94318 36993 53801 49694 51831 40466 FALSE FALSE TRUE 31694.3717 64868.59995 97934.38606 21627.7728 84927.36875 38929.89628 42305.97684 37506.46858 62233.00628 30378.57092 1.043313452 2.135340735 3.223798325 0.711941745 2.795634099 1.281492022 1.392625642 1.234635713 2.048582418 1 14.89076638 NMSVHLSPCFR ddPTM_HeLa_A486_30min_R1 2 NMSVHLSPCFR 11 0 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 0 ; ; 73.435 0.025361 29027000 44928 65151 62881 5353.7 82900 36918 42220 49522 64940 21642.6 FALSE FALSE TRUE 41778.77921 59988.19748 87230.20721 12463.68416 72501.90899 32363.43251 31656.10944 38246.92166 70569.05149 16223.15209 2.575256582 3.697690631 5.376896347 0.76826526 4.469039591 1.994891765 1.951292157 2.357551815 4.349897671 1 13.98576654 -5.255227856 24.99869309 2.518566261 3.864721951 0.206628946 1.308700616 866.8299548 3488606.009 0.346277203 0.580979459 5.56E-06 5.255227856 1.34615569 NMSVIAHVDHGK ddPTM_HeLa_A485_30min_R1 2 NMSVIAHVDHGK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 180.48 1.51E-09 165423000 206442 228255 161155 222100 345650 196645 357160 334620 191516 379980 FALSE FALSE TRUE 252364.3107 254947.4367 220772.9407 234232.7606 311235.8723 206941.0281 280849.8483 252553.9203 229951.5045 285257.979 0.884687999 0.893743402 0.773941334 0.821126061 1.091068069 0.725452199 0.984546863 0.885352694 0.806117695 1 18.12190772 -11.35393091 2.091886615 1.684064076 0.875686462 0.125389667 0.099739365 14288592.05 1429771.395 46285815.18 0.023997624 4.43E-12 11.35393091 -0.808377613 NMSVIAHVDHGK ddPTM_HeLa_A486_30min_R1 3 NMSVIAHVDHGK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ;; ;; 180.48 1.51E-09 392653000 531873 425562 249203 103236 521157 476285 633370 547612 415975 556268 FALSE FALSE TRUE 494591.4493 391838.9172 345701.0755 240338.6253 455788.6295 417525.7992 474894.1269 422932.7019 452032.0479 416974.8721 1.186142097 0.939718298 0.829069324 0.576386352 1.093084164 1.001321248 1.138903466 1.014288223 1.084075032 1 18.66960092 NMTVEQLLTGS(ph)PTS(ph)PTVEPEKPTR ddPTM_HeLa_A486_30min_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 NMT(0.001)VEQLLT(0.047)GS(0.938)PT(0.064)S(0.912)PT(0.038)VEPEKPTR 76.765 0.0074561 53384000 49374 47919 34792 28029 52142 55351 77134 68614 39142 68664 TRUE FALSE FALSE 45913.13757 44121.72392 48264.39416 65252.92851 45601.86416 48522.35639 57834.25736 52992.09003 42534.86008 51470.08747 0.892035351 0.857230405 0.937717353 1.267783517 0.885987695 0.942729239 1.123647932 1.029570623 0.826399607 1 15.65144661 -5.005444532 24.77383249 1.015992001 0.880343067 0.183968424 0.115893754 352.3485786 1603297.132 0.030724316 0.060996331 9.88E-06 5.005444532 -0.135648935 NMTVEQLLTGS(ph)PTSPTVEPEKPTR ddPTM_HeLa_A485_30min_R1 2 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLT(0.006)GS(0.776)PT(0.17)S(0.038)PT(0.01)VEPEKPTR;NMTVEQLLT(0.001)GS(0.986)PT(0.012)S(0.002)PTVEPEKPTR ; 210.8 2.57E-29 506700000 281273 284118 219213 391811 445624 264425 451355 479828 256666 544358 TRUE FALSE FALSE 343841.2085 317343.1286 300309.0109 413214.6428 401256.1099 278269.8841 354919.317 362149.4307 308176.5119 408659.5688 0.841387881 0.776546429 0.734863524 1.011146378 0.981883554 0.68093324 0.868496284 0.88618855 0.754115492 1 18.64053999 -11.43342839 2.312120294 2.611960925 0.839610058 0.191944308 0.100055036 13174426.66 1269481.021 111368253.7 0.027271678 3.69E-12 11.43342839 -1.772350867 NMTVEQLLTGS(ph)PTSPTVEPEKPTR ddPTM_HeLa_A486_30min_R1 4 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLT(0.139)GS(0.746)PT(0.045)S(0.054)PT(0.015)VEPEKPTR;NMTVEQLLT(0.002)GS(0.991)PT(0.006)S(0.001)PTVEPEKPTR;NMTVEQLLTGS(0.996)PT(0.003)SPTVEPEKPTR;NMTVEQLLT(0.012)GS(0.936)PT(0.04)S(0.009)PT(0.002)VEPEKPTR ;;; 293.43 1.66E-89 1239784000 911776 772945 444742 417535 747762 914216 1144153 1068841 664148 1130081 TRUE FALSE FALSE 847865.2108 711694.0232 616958.013 972042.5811 653970.7174 801429.325 857873.8178 825489.2369 721716.8834 847101.362 1.000901721 0.840152141 0.728316634 1.147492643 0.772009994 0.946084331 1.012716844 0.974486967 0.85198409 1 19.69217508 -6.50112127 24.86222336 0.960775151 0.895033759 0.060903363 0.117108919 2192.835957 2505754.622 0.040783209 0.035626297 3.15E-07 6.50112127 -0.065741391 NMTVEQLLTGSPT(ph)SPTVEPEKPTR ddPTM_HeLa_A485_30min_R1 2 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLTGS(0.002)PT(0.569)S(0.422)PT(0.007)VEPEKPTR;NMTVEQLLTGS(0.363)PT(0.622)S(0.014)PT(0.001)VEPEKPTR ; 242.74 6.77E-49 533261000 178121 163423 140066 291900 306835 180731 308319 302263 168921 377167 TRUE FALSE FALSE 217743.4019 182533.8983 191882.242 307845.7579 276285.43 190193.7957 242444.1269 228132.5253 202821.8953 283146.2081 0.769014014 0.64466305 0.67767901 1.087232493 0.975769486 0.671715849 0.856250658 0.805705741 0.716315068 1 18.11118768 -12.66976711 0.022273164 1.944445396 6.56E-06 0.123812794 0.137548377 5528.410043 11.66974145 663.4901083 387.9597519 2.14E-13 12.66976711 -1.944438837 NMTVEQLLTGSPTS(ph)PTVEPEKPTR ddPTM_HeLa_A485_30min_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLTGS(0.001)PT(0.176)S(0.782)PT(0.041)VEPEKPTR 88.014 0.0015038 59923000 47934 56048 42564 66443 67531 52887 76569 76646 47196 89857 TRUE FALSE FALSE 58596.75293 62602.32605 58310.19484 70072.61285 60807.37652 55656.08154 60209.40764 57848.44832 56667.80429 67457.3036 0.868649498 0.928028882 0.864401506 1.038769846 0.901420206 0.825056422 0.892555801 0.857556487 0.840054394 1 16.04168703 -6.001539984 24.99183588 0.873458785 0.927010591 0.079117356 0.063171182 120.2751391 1951962.731 0.019040967 0.021297179 9.96E-07 6.001539984 0.053551806 NMTVEQLLTGSPTS(ph)PTVEPEKPTR ddPTM_HeLa_A486_30min_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLT(0.001)GS(0.006)PT(0.396)S(0.571)PT(0.026)VEPEKPTR 61.186 0.010093 122620000 55363 48458 20735 34193 43785 45219 60419 61725 48332 69012 TRUE FALSE FALSE 51482.33959 44618.0116 28764.1473 79603.03202 38293.07702 39640.33953 45301.52715 47671.56495 52521.45668 51730.94601 0.995194242 0.862501366 0.556033661 1.538789413 0.740235391 0.766279038 0.875714261 0.921528961 1.015281195 1 15.65873995 -7.698990501 4.620487445 1.008453845 0.902498912 0.02727592 0.241022444 0.933881285 38.06575065 0.18552243 0.06144275 2.00E-08 7.698990501 -0.105954933 NMVDLVNTHHLHS(ph)SSDDEDDRLK ddPTM_HeLa_A485_30min_R1 2 NMVDLVNTHHLHSSSDDEDDRLK 23 1 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 NMVDLVNT(0.074)HHLHS(0.309)S(0.309)S(0.309)DDEDDRLK;NMVDLVNT(0.009)HHLHS(0.33)S(0.33)S(0.33)DDEDDRLK ; 80.847 0.0016168 451280000 297840 552100 351050 232140 476740 360780 509620 584380 481050 306790 TRUE FALSE FALSE 364093.4805 616663.2924 480918.0034 244821.2204 429274.0917 379669.8829 400735.5238 441059.8887 577592.3225 230312.8991 1.580864476 2.677502193 2.088107116 1.062993959 1.863873424 1.648495957 1.739961268 1.915046402 2.507859199 1 17.81323569 -2.680700298 8.797276632 1.840280351 1.707876156 0 0.513668532 0 0 0.116066173 0 0.00208593 2.680700298 -0.132404195 NMVDLVNTHHLHS(ph)SSDDEDDRLK ddPTM_HeLa_A486_30min_R1 2 NMVDLVNTHHLHSSSDDEDDRLK 23 1 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 NMVDLVNT(0.071)HHLHS(0.31)S(0.31)S(0.31)DDEDDRLK;NMVDLVNT(0.003)HHLHS(0.332)S(0.332)S(0.332)DDEDDRLK ; 78.991 0.0018516 336430000 305370 482130 350520 31089.9 471970 310880 317810 417230 434990 186730 TRUE FALSE FALSE 283965.1399 443924.2629 486250.7313 72378.8584 412771.1217 272526.7864 238290.5765 322235.8371 472695.2834 139971.5926 2.028734079 3.171531128 3.473924403 0.51709677 2.948963529 1.947014972 1.702420985 2.30215168 3.377080125 1 17.09477453 NMVDLVNTHHLHSSS(ph)DDEDDRLK ddPTM_HeLa_A485_30min_R1 1 NMVDLVNTHHLHSSSDDEDDRLK 23 1 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 NMVDLVNTHHLHS(0.01)S(0.046)S(0.943)DDEDDRLK 285.35 1.59E-75 1596700000 749000 717130 501070 339760 810850 649700 804900 740380 526990 718600 TRUE FALSE FALSE 915612.466 800992.1153 686436.6443 358320.2285 730118.9269 683717.2874 632926.5396 558800.6441 632752.0592 539466.2449 1.697256269 1.484786348 1.272436692 0.66421251 1.353409845 1.267395864 1.173245862 1.035839869 1.172922431 1 19.04117317 -4.725467945 2.74128407 1.110954006 1.650480299 0.548566651 0.179744809 0.207303364 3.060288934 0.049156219 0.160781994 1.88E-05 4.725467945 0.539526293 NMVDLVNTHHLHSSS(ph)DDEDDRLK ddPTM_HeLa_A486_30min_R1 3 NMVDLVNTHHLHSSSDDEDDRLK 23 1 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 NMVDLVNTHHLHSS(0.156)S(0.844)DDEDDRLK;NMVDLVNTHHLHSS(0.004)S(0.996)DDEDDRLK;NMVDLVNTHHLHS(0.003)S(0.057)S(0.94)DDEDDRLK ;; 313.84 3.73E-105 3608000000 2113160 1315810 801200 85565 1253930 1588520 1324100 1152250 1203520 702300 TRUE FALSE FALSE 1965038.396 1211540.424 1111446.097 199199.6442 1096650.407 1392544.553 992796.1751 889907.8284 1307842.083 526439.5088 3.732695521 2.301385825 2.111251299 0.378390377 2.083146095 2.64521285 1.885869428 1.690427511 2.484315977 1 19.00590824 -10.58829823 3.015056798 0.937533708 2.089228472 0.153875942 0.796184247 193245922.9 198760145 95602499.64 0.220634142 2.58E-11 10.58829823 1.151694764 NNCPDKTSAAAGSS(ph)SR ddPTM_HeLa_A485_30min_R1 1 NNCPDKTSAAAGSSSR 16 1 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 NNCPDKTS(0.001)AAAGS(0.067)S(0.466)S(0.466)R 62.19 0.010756 293690000 139640 192930 124390 159660 250700 176530 329100 335030 114870 196830 TRUE FALSE FALSE 170702.4362 215491.4852 170407.0373 168381.8215 225739.4277 185772.8378 258785.0965 252863.3672 137923.3553 147763.9034 1.155237729 1.458349978 1.153238602 1.139532847 1.527703469 1.257227466 1.751341773 1.711266158 0.933403573 1 17.17293436 -5.758217118 24.98906155 1.413133132 1.237904728 0.039922744 0.267169639 220.6548099 1711194.097 0.079338697 0.09815131 1.74E-06 5.758217118 -0.175228405 NNCPDKTSAAAGSS(ph)SR ddPTM_HeLa_A486_30min_R1 3 NNCPDKTSAAAGSSSR 16 1 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 NNCPDKTSAAAGS(0.004)S(0.832)S(0.164)R;NNCPDKTSAAAGS(0.118)S(0.529)S(0.354)R;NNCPDKT(0.002)S(0.011)AAAGS(0.143)S(0.422)S(0.422)R ;; 158 4.95E-09 273300000 368041 236512 147988 144705 297902 236103 410781 399882 187046 451720 TRUE FALSE FALSE 342243.2265 217769.9278 205292.9169 336880.553 260536.3533 206975.0124 307999.249 308837.598 203259.2979 338606.3718 1.010740656 0.643135942 0.606287814 0.994903171 0.769437243 0.611255516 0.909608544 0.912084425 0.600281964 1 18.3692496 -10.63992603 2.777676005 1.021689158 0.782938779 0.146909216 0.155986465 104408614.2 97427467.66 16240986.33 0.038336605 2.29E-11 10.63992603 -0.238750379 NNCPDKTSAAAGSSS(ph)R ddPTM_HeLa_A485_30min_R1 1 NNCPDKTSAAAGSSSR 16 1 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 NNCPDKTSAAAGS(0.06)S(0.318)S(0.623)R 95.414 0.00037085 290500000 129560 182650 108720 125080 219760 158050 293150 294990 106830 189530 TRUE FALSE FALSE 158380.175 204009.3287 148940.0522 131912.8037 197879.9228 166325.2536 230516.1077 222643.24 128269.8011 142283.659 1.113129758 1.433821213 1.046782555 0.927111409 1.390742437 1.168969471 1.620116528 1.564784329 0.901507608 1 17.11841046 -5.804566563 24.99884699 1.314611583 1.14593679 0.061812252 0.243768895 345.8459544 200469.2055 0.076433697 0.086668257 1.57E-06 5.804566563 -0.168674793 NNESQWKDS(ph)PLATR ddPTM_HeLa_A485_30min_R1 2 NNESQWKDSPLATR 14 1 O95155;O95155-4;O95155-2;O95155-3;K7EP75 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 NNESQWKDS(0.999)PLATR;NNESQWKDS(1)PLATR ; 192.62 3.28E-18 1521590000 710520 516830 401050 1565710 880540 511370 1066530 699680 563600 2101460 TRUE FALSE FALSE 868572.7227 577268.7727 549415.0841 1651240.773 792870.3458 538144.5425 838657.1528 528082.3829 676709.3504 1577604.697 0.550564235 0.365914715 0.348259032 1.046675873 0.502578591 0.341114947 0.531601582 0.334736822 0.428947348 1 20.58930432 -10.26652138 3.612942965 1.001126292 0.4947665 0.364630839 0.20018813 148090314.6 228482351.4 1829398.742 0.053598275 5.41E-11 10.26652138 -0.506359792 NNESQWKDS(ph)PLATR ddPTM_HeLa_A486_30min_R1 3 NNESQWKDSPLATR 14 1 O95155;O95155-4;O95155-2;O95155-3;K7EP75 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 NNESQWKDS(1)PLATR;NNESQWKDS(1)PLATR;NNESQWKDS(1)PLATR ;; 179.1 1.36E-17 2035090000 1879760 1688370 671710 1098180 1304630 2351020 2819730 2488010 1587820 3191900 TRUE FALSE FALSE 1747998.531 1554577.412 931814.101 2556618.539 1140991.14 2060975.056 2114203.73 1921544.436 1725453.516 2392627.464 0.730576973 0.649736507 0.38945223 1.068540162 0.476877891 0.861385689 0.883632643 0.803110582 0.721154272 1 21.19016435 -8.375108125 0.052553539 1.706520757 2.27E-08 0.214094999 0.179984383 111.4627594 2.792258796 49.65956025 39.60850274 4.22E-09 8.375108125 -1.706520734 NNK(ac)K(ac)TNK(ac)NK ddPTM_HeLa_A486_30min_R1 2 NNKKTNKNK 9 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 3 ; NNK(1)K(1)TNK(1)NK;NNK(1)K(1)TNK(1)NK 135.86 0.0012751 43213000 7867.8 10401.7 6847 9755.4 13214.8 15596.2 18643.4 18992.8 12430.3 27307.9 FALSE TRUE FALSE 7316.307849 9577.43141 9498.341769 22711.06421 11557.27656 13672.09941 13978.62413 14668.55405 13507.76841 20469.8241 0.357419185 0.467880494 0.464016775 1.109489955 0.564600678 0.667914846 0.682889314 0.716594045 0.659886883 1 14.32121108 -5.034861267 24.97744104 0.746524376 0.425974343 0.488149053 0.159429241 496.4122321 355669.6717 0.041783813 0.072417224 9.23E-06 5.034861267 -0.320550034 NNMTAS(ph)MFDLSMKDK ddPTM_HeLa_A485_30min_R1 1 NNMTASMFDLSMKDK 15 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4;Q7L804;Q7L804-2 E7EX40;Q7L804 RAB11FIP1;RAB11FIP2 Rab11 family-interacting protein 1;Rab11 family-interacting protein 2 1 0 NNMT(0.002)AS(0.998)MFDLSMKDK 133.09 6.83E-06 291650000 100240 55204 31157 142200 123090 78454 267740 248130 60166 203210 TRUE FALSE FALSE 122538.0422 61659.62759 42683.27085 149968.0259 110834.7274 82561.73013 210535.1618 187275.7284 72240.76432 152553.4868 0.80324642 0.404183666 0.279792168 0.983052102 0.726530279 0.541198578 1.3800744 1.227607001 0.473543842 1 17.21895563 -5.949702567 1.028821926 0.992431875 0.524472312 0.228384468 0.303762112 0.740042406 1.684269985 0.152973029 0.190652421 1.12E-06 5.949702567 -0.467959564 NNMTAS(ph)MFDLSMKDK ddPTM_HeLa_A486_30min_R1 2 NNMTASMFDLSMKDK 15 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4;Q7L804;Q7L804-2 E7EX40;Q7L804 RAB11FIP1;RAB11FIP2 Rab11 family-interacting protein 1;Rab11 family-interacting protein 2 1 0 NNMT(0.011)AS(0.989)MFDLSMKDK;NNMT(0.003)AS(0.997)MFDLSMKDK ; 135.04 5.24E-06 566270000 170724 190718 84481 204171 202833 305120 489220 407790 151251 347940 TRUE FALSE FALSE 158757.1292 175604.8111 117194.3057 475320.4062 177391.7938 267477.3966 366811.9816 314945.119 164361.5585 260813.5593 0.608699677 0.673296325 0.449341307 1.822452818 0.680147897 1.025550195 1.406414538 1.207548871 0.630187935 1 17.99265935 NNPS(ph)PPPDSDLER ddPTM_HeLa_A485_30min_R1 2 NNPSPPPDSDLER 13 0 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 NNPS(1)PPPDSDLER;NNPS(1)PPPDSDLER ; 158.89 6.53E-09 1016310000 358170 341040 347180 485850 598500 277540 445760 412010 389070 698040 TRUE FALSE FALSE 437843.6808 380921.6613 475616.3294 512390.7553 538911.2385 292071.5652 350519.7345 310963.9015 467152.7802 524031.4745 0.835529357 0.726906073 0.907610234 0.977786221 1.028394791 0.557355005 0.668890614 0.593406917 0.891459393 1 18.99929394 -6.258002557 24.99981708 0.712227084 0.891165693 0.203187041 0.145465162 435.7468437 3169676.256 0.049385151 0.04749884 5.52E-07 6.258002557 0.178938608 NNPS(ph)PPPDSDLER ddPTM_HeLa_A486_30min_R1 2 NNPSPPPDSDLER 13 0 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 NNPS(1)PPPDSDLER;NNPS(1)PPPDSDLER ; 167.92 5.75E-12 1275160000 772130 827340 554500 308890 851070 781750 881040 875470 748360 863660 TRUE FALSE FALSE 718007.6743 761778.5653 769217.25 719111.5304 744320.8647 685305.6333 660594.4733 676144.5924 813228.4474 647393.9145 1.10907387 1.176684779 1.188174978 1.110778947 1.149718661 1.058560511 1.020390304 1.044409867 1.256157077 1 19.30428428 -6.253428747 23.57632842 1.07520959 1.148829587 0.207654479 0.069269456 457.3549214 1346056.336 0.023040948 0.022616518 5.58E-07 6.253428747 0.073619997 NNQITNNQR ddPTM_HeLa_A485_30min_R1 2 NNQITNNQR 9 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 239.66 1.03E-23 41621000 22494 24994 24162 36147 41269 19505.9 39226 29544 24173 53576 FALSE FALSE TRUE 27497.7127 27916.83088 33100.52926 38121.61908 37160.11346 20527.19876 30845.04465 22298.28768 29024.29937 40220.48919 0.683674248 0.694094762 0.822976794 0.947815898 0.923910032 0.51036671 0.766898794 0.554401205 0.721629696 1 15.29564301 -6.241153024 24.88742638 0.686324291 0.815683467 0.099976987 0.146946039 1511.534741 1854361.227 0.048198218 0.048142528 5.74E-07 6.241153024 0.129359176 NNQITNNQR ddPTM_HeLa_A486_30min_R1 1 NNQITNNQR 9 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 149.72 0.00028322 5205900 4103 3943.4 5341.2 1774 5298.7 3881 5060.8 5095.3 4652.5 5473.5 FALSE FALSE TRUE 3815.400888 3630.910622 7409.455682 4129.961653 4634.087638 3402.201679 3794.534312 3935.21142 5055.782446 4102.899973 0.929927835 0.884962014 1.805906976 1.006595744 1.129466394 0.829218772 0.924842023 0.959129261 1.232246089 1 12.00242827 NNRPAFFS(ph)PSLK ddPTM_HeLa_A485_30min_R1 1 NNRPAFFSPSLK 12 1 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 NNRPAFFS(0.72)PS(0.28)LK 96.489 0.00071209 376260000 233190 178780 150960 491430 334980 191500 378070 253270 191860 678310 TRUE FALSE FALSE 285062.311 199686.7658 206806.386 518275.5765 301628.215 201526.6439 297292.256 191155.1354 230364.5422 509219.8004 0.559802095 0.392142579 0.406124007 1.017783629 0.592334027 0.39575571 0.58381912 0.375388261 0.452387244 1 18.95792899 -10.48159936 3.167043718 1.010610671 0.532057569 0.376805598 0.181085166 124940487.4 155886425.1 11710797.64 0.048587169 3.30E-11 10.48159936 -0.478553101 NNRPAFFS(ph)PSLK ddPTM_HeLa_A486_30min_R1 1 NNRPAFFSPSLK 12 1 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 NNRPAFFS(0.996)PS(0.004)LK 55.213 0.0076451 0 116700 93333 45657 61043 90160 124850 150270 126880 90242 191910 TRUE FALSE FALSE 108519.9326 85936.95317 63336.61314 142111.1889 78851.29209 109447.2764 112670.8566 97992.19377 98064.24922 143854.4869 0.754372943 0.597388062 0.4402825 0.987881519 0.548132309 0.760819344 0.783227962 0.681189693 0.681690584 1 17.13425069 -14 0.212705906 2.489421523 0.649267808 0.302871839 0.140377449 184.0147027 1.837009787 117.1604971 0.286014821 1.00E-14 14 -1.840153714 NNRPAFFS(ph)PSLKR ddPTM_HeLa_A485_30min_R1 2 NNRPAFFSPSLKR 13 2 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 NNRPAFFS(0.5)PS(0.5)LKR;NNRPAFFS(0.5)PS(0.5)LKR ; 109.48 0.00014994 2642100000 1665550 1633250 1142220 2644000 2584200 1562690 3033400 2502100 1273880 3683300 TRUE FALSE FALSE 2036045.851 1824244.38 1564774.71 2788435.025 2326907.974 1644510.032 2385289.309 1888456.052 1529536.031 2765121.096 0.736331531 0.659733992 0.565897353 1.008431431 0.841521182 0.594733458 0.862634665 0.682956003 0.553153362 1 21.39891123 NNRPAFFS(ph)PSLKR ddPTM_HeLa_A486_30min_R1 2 NNRPAFFSPSLKR 13 2 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 NNRPAFFS(0.632)PS(0.368)LKR;NNRPAFFS(0.627)PS(0.373)LKR ; 121.82 2.67E-05 2640620000 2590240 2106820 1208330 1557830 2100670 2574470 3695520 3221700 1899660 4133390 TRUE FALSE FALSE 2408677.552 1939867.91 1676227.736 3626706.968 1837184.381 2256858.067 2770861.809 2488189.239 2064324.058 3098362.24 0.777403468 0.626094614 0.541004442 1.170523873 0.592953386 0.728403554 0.894298857 0.803065958 0.66626298 1 21.56307439 -14 0.176640914 1.929975862 0.70755591 0.148515764 0.171618889 268.2195804 2.564748973 88.22020147 0.563365457 1.00E-14 14 -1.222419951 NNS(ph)FTAPSTVGK ddPTM_HeLa_A485_30min_R1 1 NNSFTAPSTVGK 12 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 NNS(0.994)FT(0.006)APSTVGK 95.195 0.0016101 59262000 65604 71028 51710 115860 106190 76874 97180 96437 60801 160570 TRUE FALSE FALSE 80197.38347 79334.10674 70839.68083 122189.1384 95617.35074 80899.00377 76416.69911 72785.67454 73003.203 120542.8541 0.665301847 0.658140272 0.587672172 1.013657254 0.793222887 0.671122352 0.633938027 0.603815756 0.605620329 1 16.8791866 -6.290892521 22.10335207 0.673827644 0.745191832 0 0.151886242 638.3443865 479045.9225 0.054294753 0.047898129 5.12E-07 6.290892521 0.071364188 NNS(ph)FTAPSTVGK ddPTM_HeLa_A486_30min_R1 2 NNSFTAPSTVGK 12 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 NNS(0.977)FT(0.023)APSTVGK;NNS(0.998)FT(0.001)APSTVGK ; 197.06 5.98E-17 211220000 211652 194510 104214 134720 217902 293870 382723 307987 205105 397778 TRUE FALSE FALSE 196816.2878 179096.3192 144568.4517 313634.9684 190570.6993 257615.3073 286961.6574 237865.0834 222883.6665 298171.7997 0.660076801 0.600648081 0.484849513 1.05185993 0.639130526 0.863982803 0.962403747 0.797745071 0.747500826 1 18.18578429 -5.247713078 24.99972228 0.852130458 0.583737121 0.530005966 0.122157511 646.0008874 1176560.097 0.032256107 0.055495652 5.65E-06 5.247713078 -0.268393337 NNS(ph)FTAPSTVGKR ddPTM_HeLa_A486_30min_R1 1 NNSFTAPSTVGKR 13 1 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 NNS(0.968)FT(0.032)APSTVGKR 47.478 0.036122 131290000 172140 151320 94284 92416 184390 190580 241320 220230 146210 266680 TRUE FALSE FALSE 160073.8749 139328.8521 130793.2898 215149.1184 161262.0868 167068.1773 180939.1836 170088.4366 158883.6005 199901.5922 0.800763381 0.696987205 0.654288384 1.076275162 0.806707366 0.835752109 0.905141283 0.85086084 0.79480908 1 17.60893044 -1 0.132691475 0.982320085 0.15297678 0.227296215 0.105992297 130.9224391 1.173182799 0.553755621 20.38810555 0.1 1 -0.829343305 NNS(ph)GDILDIPSSQNSSSLNALTHSSR ddPTM_HeLa_A485_30min_R1 1 NNSGDILDIPSSQNSSSLNALTHSSR 26 0 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 NNS(0.999)GDILDIPSSQNSSSLNALTHSSR 62.666 0.014734 81630000 32677 53174 64421 31718 77376 42949 50215 51453 55538 61064 TRUE FALSE FALSE 39945.88592 59392.23675 88253.00868 33450.67403 69672.17376 45197.74323 39486.15503 38834.07107 66683.96718 45841.8686 0.871384329 1.29558935 1.925161678 0.729697001 1.519837125 0.985948972 0.861355705 0.847131067 1.454652029 1 15.48437823 -6.302615727 24.63553358 1.00973428 1.276414344 0.105143148 0.345038108 944.6358756 565166.2389 0.120219179 0.106024598 4.98E-07 6.302615727 0.266680064 NNS(ph)GEEFDCAFR ddPTM_HeLa_A486_30min_R1 1 NNSGEEFDCAFR 12 0 Q08J23-2;Q08J23;Q08J23-3 Q08J23-2 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 NNS(1)GEEFDCAFR 134.81 0.00013467 0 127270 146990 119170 71915 149790 156760 198410 173240 118680 175310 TRUE FALSE FALSE 118349.0302 135341.9771 165315.8155 167421.7544 131001.9415 137420.545 148765.7194 133797.0338 128967.278 131411.2349 0.900600548 1.029911766 1.258003667 1.27402923 0.9968854 1.045729044 1.132062411 1.018155212 0.981402222 1 17.0037291 -7.412961957 4.786974826 0.993117862 1.096540797 0.133642315 0.106979723 0.48938757 17.22132821 0.068350343 0.030898698 3.86E-08 7.412961957 0.103422934 NNS(ph)NTCNIENELEDSRK ddPTM_HeLa_A486_30min_R1 1 NNSNTCNIENELEDSRK 17 1 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 NNS(0.5)NT(0.5)CNIENELEDSRK 126.26 1.04E-05 268730000 115820 125350 78807 40123 129730 108670 125360 136200 101960 142000 TRUE FALSE FALSE 107701.6161 115416.8095 109323.1809 93408.3717 113458.0537 95263.40028 93993.60208 105190.2332 110797.9749 106442.2757 1.011831205 1.084313622 1.027065423 0.877549555 1.065911574 0.89497711 0.883047656 0.988237357 1.040920763 1 16.69971174 -5.018880591 24.32298642 0.961104636 1.049976707 0.240455542 0.06299638 663.8534251 855214.7602 0.016999856 0.030147796 9.57E-06 5.018880591 0.08887207 NNS(ph)PPTVGAFGHTR ddPTM_HeLa_A485_30min_R1 2 NNSPPTVGAFGHTR 14 0 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 NNS(1)PPTVGAFGHTR;NNS(1)PPTVGAFGHTR ; 181.34 1.79E-17 1312420000 441950 495770 382960 519970 609900 433900 703900 694310 392280 840990 TRUE FALSE FALSE 540260.2528 553745.9889 524632.8403 548374.6445 549176.2145 456618.3331 553506.0147 524029.3839 471006.9978 631346.6703 0.855726779 0.877087051 0.830974273 0.868579293 0.869848912 0.723245017 0.876706952 0.830018449 0.746035451 1 19.26807288 NNS(ph)PPTVGAFGHTR ddPTM_HeLa_A486_30min_R1 2 NNSPPTVGAFGHTR 14 0 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 NNS(1)PPTVGAFGHTR;NNS(1)PPTVGAFGHTR ; 151.58 3.61E-08 1279350000 543060 496240 365830 220545 600000 532890 678310 626520 461340 711330 TRUE FALSE FALSE 504994.2984 456916.1351 507489.1733 513439.9057 524742.4052 467147.4498 508589.6636 483875.0728 501329.3227 533208.338 0.947086274 0.856918586 0.951765261 0.9629255 0.984122655 0.876106798 0.953829165 0.907478444 0.940212834 1 19.02433982 NNSQIASGQNQPQAAAGS(ph)HQLSMGQPHNAAGPSPHTLR ddPTM_HeLa_A486_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.365)HQLS(0.365)MGQPHNAAGPS(0.229)PHT(0.04)LR 111.61 1.11E-05 422650000 35624 36603 23307 3937.1 38815 31023 44915 32633 34245 34006 TRUE FALSE FALSE 33126.94156 33702.44497 32332.09458 9165.76777 33946.46076 27195.69768 33676.79194 25203.17827 37213.38417 25490.67626 1.299570919 1.322147935 1.268389048 0.359573347 1.331720682 1.066888042 1.321141566 0.988721445 1.459882186 1 14.63768203 NNSQIASGQNQPQAAAGS(ph)HQLSMGQPHNAAGPSPHTLRR ddPTM_HeLa_A485_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.349)HQLS(0.349)MGQPHNAAGPS(0.268)PHT(0.034)LRR 135.17 1.63E-07 528130000 27217 46455 25272 14233 58580 34353 53146 51005 24160 33151 TRUE FALSE FALSE 33271.32775 51887.50815 34621.16446 15010.51275 52747.56951 36151.66996 41790.92294 38495.94378 29008.69039 24887.0658 1.336892345 2.084918671 1.391130828 0.603145139 2.119477239 1.452628858 1.679222584 1.54682533 1.165613119 1 14.60310853 -7.877268281 3.562234579 1.007223031 1.533186272 0.169450479 0.400224768 0.392817522 8.986181243 0.382593342 0.102243817 1.33E-08 7.877268281 0.525963242 NNSQIASGQNQPQAAAGS(ph)HQLSMGQPHNAAGPSPHTLRR ddPTM_HeLa_A486_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.264)HQLS(0.264)MGQPHNAAGPS(0.236)PHT(0.236)LRR 58.172 0.0071222 2679100000 64016 53088 54029 3767.6 83549 39732 70229 64243 49616 39900 TRUE FALSE FALSE 59528.80898 48881.11354 74950.47575 8771.163204 73069.50536 34830.26981 52656.96139 49616.27131 53916.75483 29908.78029 1.990345591 1.634339918 2.505968983 0.293263821 2.443078743 1.16454999 1.760585382 1.658919917 1.802706573 1 14.86828146 -11.08936392 1.852682247 0.000184021 1.682999714 0.108153162 0.597738541 2958723.834 725931.7503 12470943.47 0.149809899 8.14E-12 11.08936392 1.682815693 NNSQIASGQNQPQAAAGSHQLS(ph)MGQPHNAAGPSPHTLR ddPTM_HeLa_A485_30min_R1 2 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.084)HQLS(0.419)MGQPHNAAGPS(0.222)PHT(0.276)LR;NNSQIASGQNQPQAAAGS(0.102)HQLS(0.435)MGQPHNAAGPS(0.374)PHT(0.089)LR ; 144.45 3.95E-10 1041420000 81535.1 106742 104139 69201.5 158811 70166.4 141278 108549 87156 190605 TRUE FALSE FALSE 99672.3017 119224.5484 142664.3497 72981.80272 142999.2192 73840.20421 111092.8012 81927.18755 104647.4098 143090.6813 0.696567385 0.833209733 0.997020549 0.510038823 0.99936081 0.516037827 0.776380405 0.572554319 0.731336302 1 17.1265702 -5.24670845 24.98421826 0.715894105 0.841360241 0.075258586 0.176944448 1941.713452 3293215.539 0.044946519 0.077446533 5.67E-06 5.24670845 0.125466136 NNSQIASGQNQPQAAAGSHQLS(ph)MGQPHNAAGPSPHTLR ddPTM_HeLa_A486_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.017)HQLS(0.691)MGQPHNAAGPS(0.247)PHT(0.044)LR 214.5 3.72E-31 549430000 65055 74908 42596 11916 87292 68991 95027 75994 73847 56916 TRUE FALSE FALSE 60494.98044 68972.01727 59090.31196 27741.0502 76343.02339 60479.59187 71250.23951 58691.82514 80248.11742 42663.86314 1.417944274 1.61663788 1.385020193 0.650223589 1.789407189 1.417583581 1.670037223 1.375680044 1.880938844 1 15.38072698 NNSQIASGQNQPQAAAGSHQLS(ph)MGQPHNAAGPSPHTLRR ddPTM_HeLa_A485_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.01)HQLS(0.522)MGQPHNAAGPS(0.197)PHT(0.271)LRR 194.83 2.07E-22 2257400000 115180 278800 198470 84719 377570 203180 381090 372210 138650 253970 TRUE FALSE FALSE 140801.3936 311403.2348 271892.312 89346.98445 339977.8051 213818.1906 299667.0083 280924.9139 166475.7832 190659.953 0.738494851 1.63329126 1.426058843 0.468619566 1.783163164 1.121463565 1.571735457 1.473434298 0.873155482 1 17.54064232 NNSQIASGQNQPQAAAGSHQLS(ph)MGQPHNAAGPSPHTLRR ddPTM_HeLa_A486_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.01)HQLS(0.394)MGQPHNAAGPS(0.298)PHT(0.298)LRR 150.16 1.71E-10 548310000 40491 32814 27573 0 56840 32342 38667 37963 23842 30503 TRUE FALSE FALSE 37652.79 30213.69913 38250.00403 0 49710.59719 28351.97287 28992.10762 29319.65363 25908.64376 22864.85026 1.646754279 1.321403761 1.672873585 0 2.174105521 1.239980693 1.267977148 1.282302455 1.133121077 1 14.48084385 -1.000000148 0.030820987 5.09E-07 3.146759218 0.047908884 0.519054356 5446.809585 12.89516423 414.7067714 1029.330493 0.099999966 1.000000148 3.146758709 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLR ddPTM_HeLa_A485_30min_R1 13 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(1)PHTLR;NNSQIASGQNQPQAAAGSHQLS(0.003)MGQPHNAAGPS(0.886)PHT(0.112)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(0.934)PHT(0.065)LR;NNSQIASGQNQPQAAAGSHQLS(0.001)MGQPHNAAGPS(0.766)PHT(0.233)LR;NNSQIASGQNQPQAAAGS(0.052)HQLS(0.206)MGQPHNAAGPS(0.592)PHT(0.15)LR;NNSQIASGQNQPQAAAGS(0.017)HQLS(0.054)MGQPHNAAGPS(0.724)PHT(0.205)LR;NNSQIASGQNQPQAAAGS(0.003)HQLS(0.033)MGQPHNAAGPS(0.809)PHT(0.155)LR;NNSQIASGQNQPQAAAGS(0.167)HQLS(0.167)MGQPHNAAGPS(0.53)PHT(0.136)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(0.999)PHT(0.001)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(0.997)PHT(0.003)LR;NNSQIASGQNQPQAAAGS(0.165)HQLS(0.122)MGQPHNAAGPS(0.591)PHT(0.122)LR;NNSQIASGQNQPQAAAGS(0.001)HQLS(0.001)MGQPHNAAGPS(0.992)PHT(0.007)LR;NNSQIASGQNQPQAAAGS(0.234)HQLS(0.234)MGQPHNAAGPS(0.498)PHT(0.034)LR ;;;;;;;;;;;; 290.25 3.40E-94 16130850000 598191.4 830741.5 745465.7 635892.7 1168075.2 571084.8 1099161 819547.2 698902.5 1423909.4 TRUE FALSE FALSE 731257.0132 927889.4919 1021244.484 670629.908 1051777.532 600985.9171 864316.273 618551.9642 839165.821 1068954.992 0.684085877 0.868034201 0.95536715 0.62736964 0.983930605 0.562218168 0.808561894 0.578651084 0.78503382 1 20.02776968 -6.261127068 24.99999754 0.724413 0.822618515 0.049043689 0.154038185 73.11613173 5852964.403 0.049116137 0.046243354 5.48E-07 6.261127068 0.098205515 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLR ddPTM_HeLa_A486_30min_R1 10 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.004)HQLS(0.012)MGQPHNAAGPS(0.793)PHT(0.191)LR;NNSQIASGQNQPQAAAGSHQLS(0.006)MGQPHNAAGPS(0.833)PHT(0.16)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(0.949)PHT(0.05)LR;NNSQIASGQNQPQAAAGSHQLS(0.003)MGQPHNAAGPS(0.84)PHT(0.157)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(1)PHTLR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(0.817)PHT(0.183)LR;NNSQIASGQNQPQAAAGS(0.017)HQLS(0.394)MGQPHNAAGPS(0.47)PHT(0.118)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(1)PHTLR;NNSQIASGQNQPQAAAGS(0.054)HQLS(0.054)MGQPHNAAGPS(0.748)PHT(0.143)LR;NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(0.997)PHT(0.003)LR ;;;;;;;;; 287.36 1.94E-79 12925790000 1692191 1738154 1134898.6 114318.8 1949201 1454809.1 2076696 1640829.8 1563043 1461261 TRUE FALSE FALSE 1573577.149 1600416.347 1574361.732 266139.9438 1704714.035 1275329.545 1557084.696 1267248.674 1698528.826 1095351.734 1.436595296 1.461098108 1.43731158 0.24297213 1.556316552 1.164310517 1.421538531 1.156933096 1.550669773 1 20.06296279 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLRR ddPTM_HeLa_A485_30min_R1 3 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.012)HQLS(0.029)MGQPHNAAGPS(0.715)PHT(0.244)LRR;NNSQIASGQNQPQAAAGSHQLS(0.096)MGQPHNAAGPS(0.712)PHT(0.192)LRR;NNSQIASGQNQPQAAAGS(0.002)HQLS(0.042)MGQPHNAAGPS(0.71)PHT(0.246)LRR ;; 233.32 2.30E-41 7543410000 538974 1014862 839454 336028 1438720 678999 1416011 1390504 591412 825423 TRUE FALSE FALSE 658866.9069 1133541.283 1150002.967 354384.3588 1295475.985 714550.3377 1113468.682 1049480.714 710102.9636 619660.2369 1.063271237 1.829294854 1.855860516 0.57190108 2.090623067 1.153132467 1.79690194 1.693638951 1.14595535 1 19.24111787 -7.915619054 5.339827985 1.004121554 1.514105705 0.141254578 0.434002517 0.345812256 15.021047 0.395173034 0.102931685 1.21E-08 7.915619054 0.509984151 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLRR ddPTM_HeLa_A486_30min_R1 3 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.018)HQLS(0.116)MGQPHNAAGPS(0.433)PHT(0.433)LRR;NNSQIASGQNQPQAAAGS(0.102)HQLS(0.268)MGQPHNAAGPS(0.315)PHT(0.315)LRR;NNSQIASGQNQPQAAAGS(0.069)HQLS(0.22)MGQPHNAAGPS(0.569)PHT(0.142)LRR ;; 154.68 9.20E-11 4957470000 114762 106987 107439 7721.7 136650 75728 114540 103367 98189 79714 TRUE FALSE FALSE 106717.7764 98508.96048 149042.2581 17976.50783 119510.0828 66385.44931 85880.88052 79832.59059 106700.1016 59753.09555 1.785979043 1.64860012 2.494301873 0.300846469 2.00006513 1.110995986 1.43726245 1.336041085 1.785683245 1 15.86672583 -5.226414207 24.99784205 1.324876257 1.943524074 0.302805605 0.479172522 813.6281812 580694.267 0.122216656 0.211673886 5.94E-06 5.226414207 0.618647817 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHT(ph)LR ddPTM_HeLa_A486_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIAS(0.001)GQNQPQAAAGS(0.075)HQLS(0.294)MGQPHNAAGPS(0.294)PHT(0.336)LR 50.35 0.0094609 407670000 18071 20386 16345 3179.6 22043 17532 23236 20383 19190 17831 TRUE FALSE FALSE 16804.31622 18770.53912 22674.22173 7402.269488 19278.1614 15369.08009 17422.10703 15742.23586 20853.40465 13366.00154 1.257243325 1.404349615 1.696410229 0.553813305 1.442328234 1.149863708 1.303464389 1.177781987 1.560182721 1 13.70628033 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHT(ph)LRR ddPTM_HeLa_A485_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NNSQIASGQNQPQAAAGS(0.051)HQLS(0.211)MGQPHNAAGPS(0.303)PHT(0.436)LRR 199.29 7.18E-30 2536500000 131960 228150 169810 123660 270800 181440 322050 343500 141140 294630 TRUE FALSE FALSE 161314.0467 254830.1579 232629.7854 130415.2327 243838.2012 190939.9178 253241.3866 259256.0864 169465.5034 221184.1633 0.729320058 1.152117557 1.051747024 0.589622832 1.102421609 0.863262157 1.144934533 1.172127708 0.766173766 1 17.75488857 -6.745295129 24.97260561 1.035153025 0.925517408 0.066410482 0.189253954 699.2458558 1081623.624 0.071678998 0.05534577 1.80E-07 6.745295129 -0.109635617 NNTAAET(ph)EDDES(ph)DGEDR ddPTM_HeLa_A486_30min_R1 1 NNTAAETEDDESDGEDR 17 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 2 0 NNT(0.001)AAET(0.999)EDDES(1)DGEDR 99.407 0.0012097 205530000 95626 107820 76818 37188 82888 105460 102820 101180 97960 111400 TRUE FALSE FALSE 88923.11121 99275.95053 106563.9869 86575.54338 72491.41414 92449.41744 77093.34848 78143.52274 106451.2517 83504.71491 1.06488731 1.188866409 1.276143353 1.036774312 0.86811163 1.107116138 0.923221504 0.935797731 1.274793307 1 16.34957004 -5.408518331 6.99794128 1.009296485 1.176849813 0.272405138 0.116403337 0.314792681 17.24034359 0.032431696 0.048202608 3.90E-06 5.408518331 0.167553328 NNTAAET(ph)EDDES(ph)DGEDRGGGTSGSLRR ddPTM_HeLa_A485_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGSLRR 27 2 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 2 0 NNT(0.001)AAET(0.999)EDDES(0.998)DGEDRGGGT(0.001)S(0.001)GS(0.001)LRR 95.784 0.012238 420510000 81042 56022 45876 162200 67615 74454 126270 108750 55478 223520 TRUE FALSE FALSE 99069.51331 62573.28557 62847.44146 171060.5753 60883.01319 78352.29631 99291.38297 82078.89199 66611.92573 167800.5776 0.590400312 0.372902683 0.374536503 1.01942781 0.362829581 0.466936988 0.591722534 0.489145468 0.396970777 1 17.35638816 -10.8822249 2.738509945 1.228511378 0.519768221 0.376397669 0.185990753 33433548.08 21399994.74 49489298.86 0.046389154 1.31E-11 10.8822249 -0.708743156 NNTAAET(ph)EDDES(ph)DGEDRGGGTSGVR ddPTM_HeLa_A485_30min_R1 2 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 2 0 NNT(0.001)AAET(0.999)EDDES(1)DGEDRGGGTSGVR;NNT(0.001)AAET(0.999)EDDES(1)DGEDRGGGTSGVR ; 199.7 2.18E-28 632300000 458090 477690 394960 534650 684370 375990 638260 559710 348740 676820 TRUE FALSE FALSE 559990.5401 533551.6901 541072.1397 563856.5757 616231.7198 395676.255 501890.5369 422440.2449 418728.9192 508101.2299 1.102123961 1.05008935 1.064890435 1.109732751 1.212812887 0.778735086 0.987776662 0.831409609 0.824105305 1 18.95475643 -6.262815656 24.99999937 0.880329141 1.102425594 0.682013757 0.076242058 73.59435675 1336828.657 0.025659416 0.02387092 5.46E-07 6.262815656 0.222096453 NNTAAET(ph)EDDES(ph)DGEDRGGGTSGVR ddPTM_HeLa_A486_30min_R1 3 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 2 0 NNTAAET(1)EDDES(1)DGEDRGGGTSGVR;NNTAAET(1)EDDES(1)DGEDRGGGTSGVR;NNT(0.001)AAET(0.999)EDDES(1)DGEDRGGGTSGVR ;; 197.8 2.45E-28 1784010000 976580 1042730 708430 479030 989570 996680 1300470 1210280 847190 1113380 TRUE FALSE FALSE 908126.7851 960100.2772 982753.0684 1115206.049 865448.9032 873719.7551 975078.651 934725.6642 920625.1113 834582.4011 1.088121178 1.150396026 1.177538691 1.336244387 1.036984367 1.046894535 1.168343173 1.119992062 1.103096723 1 19.67069497 -5.852152556 23.23966043 1.088058293 1.184968066 0.343965768 0.072984067 14.90694669 3811.235836 0.023471302 0.026613978 1.41E-06 5.852152556 0.096909772 NNTAAET(ph)EDDESDGEDRGGGT(ph)SGSLRR ddPTM_HeLa_A485_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGSLRR 27 2 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 2 0 NNT(0.007)AAET(0.993)EDDES(0.262)DGEDRGGGT(0.287)S(0.253)GS(0.198)LRR 91.269 0.0034713 346710000 119520 160290 112620 126580 212020 151570 252590 266590 115040 192330 TRUE FALSE FALSE 146106.8117 179034.5212 154282.8245 133494.7449 190910.5444 159505.9708 198622.083 201208.3845 138127.4728 144385.6706 1.011920443 1.239974303 1.068546649 0.924570592 1.322226393 1.104721613 1.3756357 1.393548153 0.956656379 1 17.13956804 -5.772660963 24.99960752 1.216613487 1.074539756 0.128972138 0.157665291 409.0203637 911219.0321 0.048156767 0.055091948 1.69E-06 5.772660963 -0.142073731 NNTAAETEDDES(ph)DGEDRGGGTSGSLR ddPTM_HeLa_A486_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGSLR 26 1 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDRGGGTSGSLR 136.87 3.28E-15 0 51646 60218 44237 24452 45053 59375 64658 58410 57153 63806 TRUE FALSE FALSE 48025.8821 55446.10637 61366.75111 56925.49174 39402.03264 52049.91618 48479.88452 45111.31808 62107.06806 47828.56229 1.004125564 1.159267678 1.283056571 1.190198681 0.823818044 1.088260104 1.013617851 0.943187834 1.298535124 1 15.5455848 NNTAAETEDDES(ph)DGEDRGGGTSGSLRR ddPTM_HeLa_A485_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGSLRR 27 2 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDRGGGTSGSLRR 155.25 8.28E-10 932030000 43410 93703 76065 31966 81742 60591 73611 84073 60209 45268 TRUE FALSE FALSE 53066.40474 104660.7507 104204.6088 33712.22164 73603.47947 63763.45107 57883.4085 63453.96493 72292.39403 33983.5207 1.561533462 3.079750085 3.06632764 0.992016747 2.165857979 1.876305037 1.703278746 1.86719809 2.127277944 1 15.0525477 -8.614250475 0.106348497 7.31E-13 3.153992383 0.232560461 0.597022152 33.50536822 1.486785822 26.61601084 15.32869437 2.43E-09 8.614250475 3.153992383 NNTAAETEDDES(ph)DGEDRGGGTSGVR ddPTM_HeLa_A485_30min_R1 3 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDRGGGTSGVR;NNTAAETEDDES(1)DGEDRGGGTSGVR;NNTAAETEDDES(1)DGEDRGGGTSGVR ;; 205.03 8.09E-29 2853450000 272955 379690 457420 436110 557350 340306 426030 442860 400580 598230 TRUE FALSE FALSE 333672.8981 424091.4426 626638.6928 459933.585 501858.277 358123.8959 335005.2102 334247.8906 480972.7317 449102.2706 0.742977535 0.944309282 1.395314016 1.024117701 1.117469917 0.7974217 0.745944147 0.744257851 1.070964818 1 18.77668449 -6.26300588 24.99353624 0.847872967 1.057572578 0.178883128 0.18087519 221.6676397 3536689.386 0.06441064 0.059826727 5.46E-07 6.26300588 0.20969961 NNTAAETEDDES(ph)DGEDRGGGTSGVR ddPTM_HeLa_A486_30min_R1 4 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDRGGGTSGVR;NNTAAETEDDES(1)DGEDRGGGTSGVR;NNTAAETEDDES(1)DGEDRGGGTSGVR;NNTAAETEDDES(1)DGEDRGGGTSGVR ;;; 212.66 2.16E-29 3286590000 399875 426603 297361 162025 410679 393333 478799 449368 391946 560938 TRUE FALSE FALSE 371845.8275 392797.4246 412507.1428 377202.3883 359167.8104 344807.5736 358998.426 347056.716 425920.1949 420475.4737 0.884346058 0.934174403 0.981049237 0.897085352 0.854194437 0.82004206 0.853791596 0.825391105 1.012948963 1 18.68166213 -7.776756722 24.99864672 1.006474628 0.883018662 0.538447103 0.046349143 243.4007252 397230.2065 0.050771619 0.013307086 1.67E-08 7.776756722 -0.123455966 NNTAAETEDDES(ph)DGEDRGGGTSGVRR ddPTM_HeLa_A485_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGVRR 26 2 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDRGGGTSGVRR 247.32 3.69E-50 520320000 173230 297650 240300 222580 359330 264960 372680 482420 245410 277260 TRUE FALSE FALSE 211764.4159 332457.5783 329196.9697 234738.9818 323553.8435 278832.8959 293053.8735 364105.7386 294661.536 208144.1846 1.017392901 1.597246538 1.581581394 1.127771032 1.554469774 1.339614155 1.407936878 1.749295755 1.415660671 1 17.66722373 NNTAAETEDDESDGEDRGGGT(ph)SGSLRR ddPTM_HeLa_A486_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGSLRR 27 2 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(0.119)DGEDRGGGT(0.294)S(0.294)GS(0.294)LRR 132.13 1.52E-15 0 254760 255630 198360 50014 305400 250450 259640 255340 241070 198980 TRUE FALSE FALSE 236902.6396 235372.9478 275170.3043 116435.1196 267093.8843 219552.0254 194675.3258 197204.656 261966.1417 149154.1129 1.588307791 1.578052011 1.844872387 0.780636332 1.790724232 1.471981035 1.305195828 1.322153659 1.756345411 1 17.18644423 -11.07538027 2.609049673 0.240958327 1.482600634 0.199998671 0.295209164 17286947.56 3607884.076 78648850.19 0.072269822 8.41E-12 11.07538027 1.241642307 NPDVDTSFLPDRDREEEENRLR ddPTM_HeLa_A486_30min_R1 1 NPDVDTSFLPDRDREEEENRLR 22 3 B0S8I6;Q9Y247;Q14320 B0S8I6 FAM50A;FAM50B Protein FAM50B;Protein FAM50A 0 0 212.39 1.27E-27 206550000 37571 41561 43658 21731 73585 50898 66719 65447 43372 55561 FALSE FALSE TRUE 34937.46692 38267.555 60563.5468 50590.86622 64355.28315 44618.72225 50025.20052 50546.1468 47131.51988 41648.16396 0.83887172 0.91882934 1.45417087 1.214720204 1.545212971 1.071325072 1.201138196 1.213646461 1.131659007 1 15.34596528 -4.632842132 7.004766264 1.240141075 0.859701692 0.450798191 0.155102602 0.16878931 9.554600442 0.038636403 0.103784459 2.33E-05 4.632842132 -0.380439383 NPEAALS(ph)PTFR ddPTM_HeLa_A485_30min_R1 4 NPEAALSPTFR 11 0 F5H6D8;B4DTN4;Q86U44;B4E349 F5H6D8 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 NPEAALS(0.5)PT(0.5)FR;NPEAALS(0.5)PT(0.5)FR;NPEAALS(0.932)PT(0.068)FR;NPEAALS(0.792)PT(0.208)FR ;;; 132.24 0.00014514 746440000 1163151 1157780 940195 1619877 1645450 1265785 1839600 1816407 1101315 2188340 TRUE FALSE FALSE 1421889.927 1293172.3 1288012.255 1708366.779 1481623.22 1332059.545 1446554.432 1370930.335 1322338.819 1642827.111 0.865514038 0.787162746 0.784021792 1.03989444 0.901874099 0.810833676 0.880527489 0.834494589 0.804916603 1 20.64774923 NPEAALS(ph)PTFR ddPTM_HeLa_A486_30min_R1 3 NPEAALSPTFR 11 0 F5H6D8;B4DTN4;Q86U44;B4E349 F5H6D8 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 NPEAALS(0.971)PT(0.029)FR;NPEAALS(0.511)PT(0.489)FR;NPEAALS(0.989)PT(0.011)FR ;; 117.67 0.00027105 945639000 1210018 1245033 769778 630052 1236677 1290727 1617407 1508823 1009729 1785469 TRUE FALSE FALSE 1125201.987 1146372.051 1067856.657 1466792.897 1081561.439 1131490.226 1212714.661 1165296.94 1097253.123 1338375.941 0.840721917 0.856539643 0.797874965 1.095949839 0.808114825 0.845420327 0.906109131 0.870679833 0.819839246 1 20.35205199 -11.56729018 2.185794685 3.195989141 0.873659936 0.184786706 0.080985382 2858648.545 316382.0826 31320606.05 0.019875124 2.71E-12 11.56729018 -2.322329205 NPEDKSPQLSLSPRPAS(ph)PK ddPTM_HeLa_A485_30min_R1 4 NPEDKSPQLSLSPRPASPK 19 2 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 NPEDKSPQLS(0.001)LS(0.003)PRPAS(0.996)PK;NPEDKSPQLSLSPRPAS(1)PK;NPEDKSPQLSLSPRPAS(1)PK;NPEDKSPQLSLSPRPAS(1)PK ;;; 220.53 4.92E-35 3895910000 2592700 2316710 1098990 3657360 2918330 3229570 5907470 5701020 1922510 5419800 TRUE FALSE FALSE 3169437.17 2587629.082 1505552.134 3857152.316 2627770.818 3398665.291 4645290.775 4302835.906 2308340.123 4068743.604 0.778971958 0.635977425 0.370028756 0.947995915 0.645843305 0.835310755 1.141701524 1.057534297 0.56733487 1 21.95615194 -6.101743167 1.423760464 0.943675951 0.639228043 0.27487447 0.197204282 0.533831874 2.198749285 0.086209782 0.088781507 7.91E-07 6.101743167 -0.304447909 NPEDKSPQLSLSPRPAS(ph)PK ddPTM_HeLa_A486_30min_R1 3 NPEDKSPQLSLSPRPASPK 19 2 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 NPEDKSPQLSLSPRPAS(1)PK;NPEDKSPQLSLS(0.001)PRPAS(0.999)PK;NPEDKSPQLSLSPRPAS(1)PK ;; 158.65 8.81E-10 2602320000 1711570 1074720 454210 1037330 1145360 1463530 2421270 2233800 855660 3213520 TRUE FALSE FALSE 1591597.782 989555.2731 630092.2762 2414956.664 1001698.269 1282974.549 1815442.636 1725212.504 929829.2977 2408833.675 0.660733781 0.410802657 0.261575667 1.002541889 0.415843684 0.532612343 0.753660435 0.716202418 0.386008095 1 21.19990335 -14 0.230264801 3.249995352 0.527529263 0.264661338 0.209251739 223.3757048 2.236282826 234.8258322 0.361187432 1.00E-14 14 -2.722466089 NPFRGS(ph)PK ddPTM_HeLa_A485_30min_R1 1 NPFRGSPK 8 1 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LPI0;A0A096LNQ0;A0A096LNR2;A0A096LNX0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 NPFRGS(1)PK 80.834 0.0041416 477180000 285780 262460 160160 612310 477360 269620 517730 476200 264870 885030 TRUE FALSE FALSE 349350.7751 293152.4139 219409.8488 645758.9448 429832.3623 283736.8863 407112.756 359411.2033 318026.9795 664408.3088 0.525807354 0.441223281 0.330233451 0.971930869 0.646940077 0.427051984 0.61274483 0.540949291 0.478661954 1 19.34171059 -10.81151677 2.772109988 1.133319502 0.555814795 0.397743264 0.165036192 43218431.16 32857236.26 38684994.51 0.042295384 1.54E-11 10.81151677 -0.577504707 NPFRGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 NPFRGSPK 8 1 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LPI0;A0A096LNQ0;A0A096LNR2;A0A096LNX0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 NPFRGS(1)PK;NPFRGS(1)PK ; 79.82 0.004517 548580000 404100 371650 205292 282450 389850 442010 655070 584510 347380 753630 TRUE FALSE FALSE 375774.6768 342199.1005 284786.5603 657557.8742 340951.3778 387479.3002 491164.5574 451429.8328 377491.1781 564916.1427 0.665186651 0.60575203 0.504121831 1.163992006 0.603543344 0.685905873 0.869446844 0.799109458 0.668225157 1 19.1076772 -13.9999999 0.03718978 2.191505102 1.44E-12 0.195717589 0.172703029 1695.185317 4.709887992 240.2144313 78.39719998 1.00E-14 13.9999999 -2.191505102 NPHPSSAFLNLIGFVSR ddPTM_HeLa_A485_30min_R1 1 NPHPSSAFLNLIGFVSR 17 0 P53004;C9J1E1 P53004 BLVRA Biliverdin reductase A 0 0 76.768 0.0068681 9828600 5376.1 7321.8 6201.5 4977.5 9675.3 6132.9 8491.9 8463 6092.1 8335 FALSE FALSE TRUE 6571.994898 8178.020819 8495.692916 5249.408221 8711.99316 6454.009161 6677.536193 6387.435981 7314.72859 6257.237894 1.050302867 1.306969778 1.35773852 0.838933777 1.392306527 1.031446985 1.067169941 1.020807597 1.169002795 1 12.61131024 -6.195699312 0.765285173 1.052477337 1.206239526 0.097794 0.160812154 1.57588945 2.031257279 0.107471561 0.112206206 6.37E-07 6.195699312 0.153762189 NPHPSSAFLNLIGFVSR ddPTM_HeLa_A486_30min_R1 3 NPHPSSAFLNLIGFVSR 17 0 P53004;C9J1E1 P53004 BLVRA Biliverdin reductase A 0 0 ;; ;; 109.66 0.00016299 30656100 25582.3 34705.1 34324.1 12589.8 47093.7 34467 25521.5 34460.3 27785.9 23450.7 FALSE FALSE TRUE 23789.11288 31954.94148 47615.31075 29309.69065 41186.76901 30214.81197 19135.75076 26614.44195 30194.40418 17578.49208 1.353307938 1.817843154 2.708725557 1.667360916 2.343020597 1.718851187 1.088588866 1.514034414 1.717690234 1 14.1015237 -6.533359505 9.019308409 1.376456539 1.99648361 0.374668687 0.392590274 0.186953291 122.7757701 0.148262888 0.117251431 2.93E-07 6.533359505 0.620027071 NPLEELRPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NPLEELRPSPR 11 1 F8W130;Q12815;F8W052;F8VXF3;B7Z5Q9;F8W1E3;Q12815-3;Q12815-2 F8W130 TROAP Tastin 1 0 NPLEELRPS(1)PR 42.568 0.033823 91135000 45288 49902 42918 16200 50147 46579 46943 51507 39636 47078 TRUE FALSE FALSE 42113.54507 45947.58378 59536.99898 37714.4187 43857.09566 40832.55656 35197.36489 39779.98049 43071.68039 35289.36237 1.193377897 1.302023632 1.687108947 1.068719188 1.242785154 1.157078332 0.997393053 1.127251325 1.220528723 1 15.10694574 -5.323684492 24.99973823 1.123573836 1.384959654 0.454623753 0.139221129 206.5560972 82959.36202 0.039475088 0.058551032 4.75E-06 5.323684492 0.261385818 NPLPNIDHELQELLIDRGEDVPS(ph)EEEEEEENGFEDR ddPTM_HeLa_A485_30min_R1 1 NPLPNIDHELQELLIDRGEDVPSEEEEEEENGFEDR 36 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 NPLPNIDHELQELLIDRGEDVPS(1)EEEEEEENGFEDR 73.395 0.0004435 22884000 3097.7 2520.3 4977.3 5081.5 12039 4249.3 7936.4 10948 4434.8 7584.1 TRUE FALSE FALSE 3786.772678 2815.027161 6818.610393 5359.089478 10840.35489 4471.786777 6240.723306 8262.985834 5324.823682 5693.523445 0.665101798 0.4944262 1.197608205 0.941260632 1.903980021 0.785416416 1.096109178 1.451295654 0.935242251 1 12.47510603 -4.765507967 24.99765455 1.182528594 0.579763898 0.369837659 0.304198016 91.3684494 561388.0374 0.076743242 0.169632603 1.72E-05 4.765507967 -0.602764696 NPLPNIDHELQELLIDRGEDVPS(ph)EEEEEEENGFEDR ddPTM_HeLa_A486_30min_R1 1 NPLPNIDHELQELLIDRGEDVPSEEEEEEENGFEDR 36 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 NPLPNIDHELQELLIDRGEDVPS(1)EEEEEEENGFEDR 46.351 0.020875 25958000 1046.6 1076.2 1606.1 1555.7 3224.8 2022.8 3077.9 3177.1 1789.8 1173.4 TRUE FALSE FALSE 973.2387446 990.9179925 2228.024933 3621.748221 2820.315514 1773.247502 2307.776865 2453.743686 1944.941305 879.5730024 1.106490015 1.126589822 2.533075625 4.117620949 3.206459846 2.016032208 2.623746817 2.789698727 2.211233519 1 9.780659513 -4.777212345 5.609380803 2.694277557 1.098707619 0.354370358 0.76637379 0.152007007 14.90992223 0.201338429 0.470426802 1.67E-05 4.777212345 -1.595569938 NPLPPILGS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 NPLPPILGSPTK 12 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 NPLPPILGS(0.814)PT(0.186)K;NPLPPILGS(0.965)PT(0.035)K ; 171.08 1.32E-10 749100000 686140 619230 391600 932510 793910 559830 1061930 959410 430630 1272560 TRUE FALSE FALSE 838769.4758 691643.5619 536469.1358 983450.6601 714865.5328 589141.8331 835039.9803 724113.1932 517053.491 955334.2117 0.877985385 0.723980732 0.561551266 1.029431007 0.748288425 0.616686627 0.87408152 0.757968452 0.54122786 1 19.865646 -10.24800373 5.102540575 1.000036355 0.750164467 0.21595713 0.144041387 5.84E-05 8.61E-06 0.136804711 0.033175195 5.65E-11 10.24800373 -0.249871888 NPLPPILGS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 NPLPPILGSPTK 12 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 NPLPPILGS(0.982)PT(0.018)K;NPLPPILGS(0.975)PT(0.025)K ; 192.54 2.19E-13 670080000 767570 608820 275195 383020 503420 664490 949400 862660 479210 1054910 TRUE FALSE FALSE 713767.3067 560574.8859 381757.874 891689.9168 440276.3694 582511.9798 711850.0783 666251.1497 520748.3086 790753.6697 0.902641789 0.708912152 0.48277724 1.127645626 0.556780684 0.736654159 0.90021723 0.842552081 0.658546812 1 19.59286882 -11.5290053 2.066310058 3.877596403 0.76781537 0.13351127 0.176899531 6999602.284 493120.9186 94183069.5 0.044402204 2.96E-12 11.5290053 -3.109781033 NPNNEFWEANRDIYLS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 NPNNEFWEANRDIYLSPDR 19 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 NPNNEFWEANRDIYLS(1)PDR 119.52 9.50E-06 67051000 10947 26373 19288 9287.8 36900 21674 36696 48943 16671 20825 TRUE FALSE FALSE 13382.12238 29457.09294 26423.43384 9795.168996 33226.10644 22808.81713 28855.59982 36939.65251 20016.71678 15633.71076 0.855978634 1.884203526 1.690157523 0.626541526 2.12528599 1.458950948 1.845729416 2.362820516 1.280356091 1 13.93237263 -5.801344905 24.99999805 1.744346062 1.338923182 0.125077002 0.50498666 319.9030594 200411.0103 0.152514939 0.172938029 1.58E-06 5.801344905 -0.405422881 NPPGY(ph)LEDSFVK ddPTM_HeLa_A486_30min_R1 1 NPPGYLEDSFVK 12 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GTC1;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 NPPGY(0.842)LEDS(0.158)FVK 62.823 0.020159 24190000 49909 94317 82375 45226 108580 94515 122220 119660 70077 59657 TRUE FALSE FALSE 46410.63683 86842.97742 114272.8061 105288.4136 94960.88393 82854.70026 91639.26329 92416.03016 76151.33078 44718.4989 1.037839775 1.941992231 2.555381082 2.354471107 2.12352575 1.852805937 2.049247304 2.06661745 1.70290445 1 15.44858414 -8.119042111 2.676061961 1.000547843 2.027402482 0.389935601 0.376396904 0.496533894 7.328019168 0.377238533 0.101653088 7.60E-09 8.119042111 1.026854639 NPPS(ph)PRPSQLPVLDR ddPTM_HeLa_A485_30min_R1 4 NPPSPRPSQLPVLDR 15 1 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 NPPS(1)PRPSQLPVLDR;NPPS(1)PRPSQLPVLDR;NPPS(1)PRPSQLPVLDR;NPPS(1)PRPSQLPVLDR ;;; 108.13 0.00013034 2125520000 1153470 1037540 1147150 1715640 1542380 887940 1265310 847900 1223600 2333530 TRUE FALSE FALSE 1410055.422 1158871.278 1571528.522 1809361.069 1388815.232 934431.1654 994966.1819 639951.1955 1469165.296 1751823.916 0.804907051 0.661522695 0.897081326 1.032844141 0.792782436 0.533404731 0.567960154 0.365305662 0.838648955 1 20.74042634 -6.119094151 5.604048618 0.616834628 0.847311323 0.170625163 0.185009902 0.327323416 13.76543422 0.060823284 0.061081317 7.60E-07 6.119094151 0.230476695 NPPS(ph)PRPSQLPVLDR ddPTM_HeLa_A486_30min_R1 4 NPPSPRPSQLPVLDR 15 1 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 NPPS(0.999)PRPS(0.001)QLPVLDR;NPPS(1)PRPSQLPVLDR;NPPS(1)PRPSQLPVLDR;NPPS(1)PRPSQLPVLDR ;;; 102.98 0.00020172 2372990000 1634620 2015150 1366390 769915 1795490 2171050 2434800 2254470 1816990 2197730 TRUE FALSE FALSE 1520041.579 1855462.175 1895492.801 1792401.029 1570282.902 1903207.925 1825587.287 1741176.396 1974488.156 1647404.103 0.92268896 1.126294497 1.150593711 1.088015397 0.953186227 1.155276912 1.108159973 1.056921245 1.198545125 1 20.65176306 NPPS(ph)PRPSQLPVLDRDSTSVLESCGLGR ddPTM_HeLa_A486_30min_R1 1 NPPSPRPSQLPVLDRDSTSVLESCGLGR 28 2 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 NPPS(0.931)PRPS(0.069)QLPVLDRDSTSVLESCGLGR 71.907 0.0031998 187640000 62221 63168 66264 31644 105670 60474 81411 96053 52475 64023 TRUE FALSE FALSE 57859.62921 58162.33763 91923.19541 73668.8312 92415.88327 53013.33273 61041.10672 74183.82872 57023.57525 47991.22408 1.205629369 1.211936948 1.91541677 1.535047972 1.925682977 1.104646396 1.271922271 1.545779049 1.188208393 1 15.55048299 -6.292508912 24.98818368 1.259335614 1.557974828 0.287224563 0.261885555 1071.113771 861457.3979 0.09606606 0.084730108 5.10E-07 6.292508912 0.298639214 NPQMPQYSSPQPGS(ph)ALSPR ddPTM_HeLa_A485_30min_R1 1 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 NPQMPQYSS(0.001)PQPGS(0.499)ALS(0.499)PR 55.33 0.0035657 0 17756 19381 18685 24756 24510 16539 30486 25807 17701 30481 TRUE FALSE FALSE 21705.76094 21647.43936 25597.35905 26108.35759 22069.69834 17404.95647 23972.41705 19477.79279 21253.42834 22882.64766 0.948568595 0.94601987 1.118636245 1.140967513 0.964473109 0.760618121 1.04762427 0.851203631 0.928801101 1 14.48196637 -5.994241036 24.853508 0.910481137 1.039542108 0.271212433 0.093110589 185.0238024 798483.7293 0.029299909 0.033125278 1.01E-06 5.994241036 0.129060971 NPQMPQYSSPQPGSALS(ph)PR ddPTM_HeLa_A485_30min_R1 1 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 NPQMPQYSSPQPGS(0.015)ALS(0.985)PR 166.52 1.83E-12 158690000 44669 70784 37090 54178 84694 40865 80485 81359 51199 90982 TRUE FALSE FALSE 54605.46494 79061.57306 50811.13444 57137.60695 76261.56798 43004.62821 63288.72225 61405.57768 61474.16967 68301.8618 0.799472569 1.157531742 0.743920196 0.83654538 1.116537177 0.629626003 0.926603179 0.899032267 0.900036515 1 16.05963728 -8.550294648 1.660487606 0.999986148 0.891093571 0.046674853 0.149837911 15.66743766 43.06610685 0.138097094 0.03918731 2.82E-09 8.550294648 -0.108892577 NPQMPQYSSPQPGSALS(ph)PR ddPTM_HeLa_A486_30min_R1 2 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 NPQMPQYSSPQPGS(0.002)ALS(0.998)PR;NPQMPQYSSPQPGSALS(1)PR ; 321.26 5.79E-90 669520000 108343 95849 62685 42499 122491 102987 130775 124246 86643 133621 TRUE FALSE FALSE 100748.7152 88253.57616 86958.31076 98939.81978 107127.0366 90281.51104 98053.7118 95957.89807 94153.285 100161.4319 1.005863368 0.881113364 0.868181586 0.987803568 1.069543781 0.901360028 0.97895677 0.958032411 0.940015366 1 16.61196757 -5.28377215 24.75972369 0.975626202 0.914658825 0.199647998 0.053170307 1074.792158 1191589.676 0.015206931 0.022577477 5.20E-06 5.28377215 -0.060967377 NPS(ph)PDHSYKR ddPTM_HeLa_A486_30min_R1 1 NPSPDHSYKR 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 NPS(1)PDHSYKR 86.944 0.0030917 42014000 31254 25875 19259 15439 29577 26824 34570 32741 21629 34937 TRUE FALSE FALSE 29063.256 23824.57076 26716.60057 35942.77224 25867.17687 23514.72761 25920.22036 25286.58903 23503.81913 26188.5478 1.109769668 0.909732412 1.0201635 1.372461448 0.98772857 0.897901166 0.989754016 0.965559038 0.89748463 1 14.67664844 -5.981960032 24.99985488 0.949613214 1.095404168 0.292811484 0.112649088 345.57398 478895.2364 0.036713211 0.041621917 1.04E-06 5.981960032 0.145790954 NPS(ph)PPPPGR ddPTM_HeLa_A486_30min_R1 2 NPSPPPPGR 9 0 E9PL53;E9PMD2;J3KND1;E9PRZ1;Q96ER3 E9PL53 SAAL1 Protein SAAL1 1 0 NPS(1)PPPPGR;NPS(1)PPPPGR ; 94.82 0.0027783 349600000 395730 434390 293964 139179 366680 428190 454950 426740 400460 466830 TRUE FALSE FALSE 367991.3706 399967.3544 407794.7334 324015.7457 320687.5752 375364.2713 341116.698 329580.6177 435172.1952 349932.7294 1.051606036 1.142983553 1.165351792 0.92593724 0.916426354 1.072675517 0.974806497 0.941839931 1.243588149 1 18.41671808 -5.250200863 24.96850935 1.005482055 1.122280771 0.220614786 0.093684458 1057.419112 2349253.569 0.025303198 0.043327695 5.62E-06 5.250200863 0.116798716 NPS(ph)PTTRPVSR ddPTM_HeLa_A485_30min_R1 1 NPSPTTRPVSR 11 1 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3;A0A0U1RQR2 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 NPS(0.937)PT(0.061)T(0.002)RPVSR 54.402 0.019928 243300000 101060 143410 125990 109260 173310 142410 200000 226430 136780 162110 TRUE FALSE FALSE 123540.4483 160180.552 172598.9439 115228.5971 156054.6479 149866.3674 157268.3662 170897.6875 164230.4914 121698.9604 1.015131501 1.316203125 1.418245015 0.946833044 1.282300583 1.2314515 1.292273702 1.404265796 1.349481465 1 16.89295732 -6.387325894 2.253335288 1.291731391 1.199602844 0.022507608 0.163413055 1.032842354 10.30176894 0.066362763 0.056279076 4.10E-07 6.387325894 -0.092128548 NPS(ph)PTTRPVSR ddPTM_HeLa_A486_30min_R1 2 NPSPTTRPVSR 11 1 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3;A0A0U1RQR2 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 NPS(0.949)PT(0.051)TRPVSR;NPS(0.967)PT(0.033)TRPVSR ; 91.712 0.001241 3212330000 380390 372960 272920 113224 431680 374340 424230 385290 299350 363960 TRUE FALSE FALSE 353726.6253 343405.2913 378601.9331 263591.194 377534.6691 328157.7368 318083.167 297567.8778 325297.899 272822.047 1.296547069 1.258715324 1.387724846 0.966165297 1.383812904 1.202827046 1.165899789 1.090703193 1.192344617 1 18.05760071 -10.84916258 0.036618481 2.50E-07 2.022404288 0.335813546 0.11214298 573.4138618 3.048417749 110.9527828 62.50739909 1.42E-11 10.84916258 2.022404038 NPSDSAVHS(ph)PFTK ddPTM_HeLa_A485_30min_R1 4 NPSDSAVHSPFTK 13 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 NPSDSAVHS(1)PFTK;NPSDSAVHS(1)PFTK;NPSDSAVHS(0.999)PFT(0.001)K;NPSDSAVHS(1)PFTK ;;; 151.04 4.09E-08 3025890000 3595960 2560190 2459360 4516900 4081910 2236820 3329020 2211310 2789440 6212500 TRUE FALSE FALSE 4395868.896 2859581.95 3369179.607 4763646.81 3675500.708 2353936.436 2617747.681 1668982.755 3349255.022 4663838.083 0.942543205 0.6131392 0.722404926 1.021400556 0.788084973 0.504720875 0.561286141 0.357856067 0.718132783 1 22.15308627 -6.190751028 6.834479409 0.584394327 0.813601129 0.182635011 0.189086803 0.361988614 29.67032116 0.061070471 0.060999947 6.45E-07 6.190751028 0.229206802 NPSDSAVHS(ph)PFTK ddPTM_HeLa_A486_30min_R1 5 NPSDSAVHSPFTK 13 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 NPSDSAVHS(1)PFTK;NPSDSAVHS(1)PFTK;NPSDSAVHS(1)PFTK;NPSDS(0.106)AVHS(0.858)PFT(0.036)K;NPSDSAVHS(1)PFTK ;;;; 168.68 3.89E-12 4438260000 6050510 6161480 3229870 763966 4893670 6370930 6594080 5790620 5610200 5466780 TRUE FALSE FALSE 5626400.494 5673221.885 4480562.163 1778551.457 4279860.277 5584949.431 4944171.439 4472222.234 6096496.653 4097862.705 1.373008541 1.384434349 1.093390015 0.434019289 1.044412804 1.362893253 1.206524424 1.091354825 1.487725942 1 21.96644022 -6.230309167 22.64060894 1.233960909 1.049979814 0.080185879 0.274659321 601.2676612 437292.7834 0.098642575 0.098623655 5.88E-07 6.230309167 -0.183981095 NPSDSAVHS(ph)PFTKR ddPTM_HeLa_A485_30min_R1 3 NPSDSAVHSPFTKR 14 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 NPSDSAVHS(0.5)PFT(0.5)KR;NPSDSAVHS(0.996)PFT(0.004)KR;NPSDSAVHS(0.999)PFT(0.001)KR ;; 167.97 4.08E-12 2360700000 1422570 1527610 1271160 1363450 2296380 1422170 2045290 1851150 1407220 2265030 TRUE FALSE FALSE 1739015.789 1706250.701 1741414.981 1437931.821 2067744.344 1496632.622 1608297.083 1397152.56 1689636.146 1700399.706 1.022710003 1.003440953 1.024120961 0.845643419 1.216034287 0.880165185 0.945834722 0.821661257 0.993669983 1 20.69744248 NPSDSAVHS(ph)PFTKR ddPTM_HeLa_A486_30min_R1 2 NPSDSAVHSPFTKR 14 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 NPSDSAVHS(0.5)PFT(0.5)KR;NPSDSAVHS(0.5)PFT(0.5)KR ; 101.5 0.00034745 1876050000 1401810 1297640 800340 163571 1254850 1128990 1466250 1493500 998360 1181440 TRUE FALSE FALSE 1303550.358 1194810.28 1110253.082 380801.5544 1097455.012 989706.6925 1099378.742 1153462.653 1084898.649 885599.7341 1.471940774 1.349153838 1.253673685 0.429992851 1.239222382 1.117555318 1.241394616 1.302464995 1.225044009 1 19.75629526 -5.004455933 24.76641076 1.086589494 1.383264093 0.240527865 0.236988638 274.8681036 1527777.291 0.065893092 0.131874643 9.90E-06 5.004455933 0.2966746 NPSDSAVHSPFT(ph)KR ddPTM_HeLa_A486_30min_R1 1 NPSDSAVHSPFTKR 14 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 NPSDSAVHS(0.337)PFT(0.663)KR 137.27 6.53E-06 592310000 541580 540050 397360 69743 580170 484460 553910 557860 467780 432990 TRUE FALSE FALSE 503618.0387 497254.4712 551228.4337 162365.2286 507399.6687 424692.2508 415315.8593 430847.456 508327.547 324566.4857 1.551663714 1.532057354 1.698352904 0.500252601 1.56331504 1.30849077 1.2796018 1.327455159 1.566173864 1 18.30815451 NPSPIRT(ph)MT(ph)DILSRGPK ddPTM_HeLa_A486_30min_R1 1 NPSPIRTMTDILSRGPK 17 2 D6RC56;D6RFY7;Q8N5Z0 D6RC56 AADAT "Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial" 2 0 NPS(0.594)PIRT(0.733)MT(0.672)DILS(0.001)RGPK 51.348 0.031612 625340000 1100300 1198400 1222200 29818 1627600 891560 559380 796840 1192800 113940 TRUE FALSE FALSE 1023174.652 1103434.42 1695468.572 69417.81092 1423451.231 781568.3919 419417.2075 615416.9269 1296192.864 85408.68238 11.97974987 12.91946426 19.85124374 0.812772297 16.66635278 9.150924358 4.910709261 7.205554632 15.17635946 1 16.38209512 -7.548372004 0.170477924 8.22E-13 16.73315233 0.230156924 5.412611778 6.171484087 1.073547317 44.64019445 41.51495474 2.83E-08 7.548372004 16.73315233 NPT(ph)ERADLK ddPTM_HeLa_A485_30min_R1 1 NPTERADLK 9 1 A0A1B0GUL7 A0A1B0GUL7 1 0 NPT(1)ERADLK 72.434 0.029771 14304000 29952 70794 93802 9789.3 53458 67604 35196 53590 54180 9526.3 TRUE FALSE FALSE 36614.71907 79072.74247 128503.2632 10324.06467 48135.53382 71143.6409 27676.08708 40446.96847 65053.42903 7151.568729 5.119816429 11.05669895 17.96854202 1.443608397 6.730765744 9.947976955 3.869932336 5.655677797 9.096385912 1 12.80404402 -5.27663029 24.98781074 5.768225024 11.349188 0.321035402 3.965279779 983.9028303 1618437.712 1.115992981 1.662372231 5.29E-06 5.27663029 5.580962975 NPT(ph)ERADLK ddPTM_HeLa_A486_30min_R1 1 NPTERADLK 9 1 A0A1B0GUL7 A0A1B0GUL7 1 0 NPT(1)ERADLK 67.776 0.036785 8793300 25902 37195 53326 3154.2 57062 15683 12410 22327 34290 7717.2 TRUE FALSE FALSE 24086.40356 34247.53274 73975.25532 7343.137004 49904.75188 13748.19091 9304.88674 17243.62949 37262.28481 5784.762889 4.163766782 5.920300174 12.78794943 1.269392911 8.626931273 2.376621337 1.608516532 2.980870577 6.441454131 1 12.49804211 -6.277032648 24.48333302 2.925735642 6.571259164 0.261222962 3.087247185 906.5587869 1423403.156 1.070401318 0.94744503 5.28E-07 6.277032648 3.645523522 NPVAS(ph)PT(ph)QPS(ph)GT(ph)EKGGHVLKDK ddPTM_HeLa_A485_30min_R1 1 NPVASPTQPSGTEKGGHVLKDK 22 2 O43435 O43435 TBX1 T-box transcription factor TBX1 4 0 NPVAS(1)PT(1)QPS(1)GT(1)EKGGHVLKDK 46.296 0.036951 1673600000 253430 664540 674800 72255 722170 478670 307020 519830 533340 94276 TRUE FALSE FALSE 309804.6292 742252.1723 924436.6008 76202.10769 650268.2191 503732.421 241422.6689 392340.8774 640376.4459 70774.72822 4.377334071 10.48753123 13.06167645 1.076685275 9.187858936 7.117405233 3.411142295 5.543516553 9.048094737 1 16.11094668 -8.888057599 0.239904482 6.37E-13 8.650758778 0.2041569 3.427698618 11.6116778 1.208474895 28.20279558 7.691243851 1.29E-09 8.888057599 8.650758778 NPVAS(ph)PT(ph)QPS(ph)GT(ph)EKGGHVLKDK ddPTM_HeLa_A486_30min_R1 4 NPVASPTQPSGTEKGGHVLKDK 22 2 O43435 O43435 TBX1 T-box transcription factor TBX1 4 0 NPVAS(1)PT(1)QPS(1)GT(1)EKGGHVLKDK;NPVAS(1)PT(1)QPS(1)GT(1)EKGGHVLKDK;NPVAS(1)PT(1)QPS(1)GT(1)EKGGHVLKDK;NPVAS(1)PT(1)QPS(1)GT(1)EKGGHVLKDK ;;; 58.722 0.017024 6152910000 970779 1581200 2123860 59655 2342850 660260 419969 788375 1343425 116292.6 TRUE FALSE FALSE 902732.4052 1455899.953 2946275.471 138879.8548 2048987.907 578803.8342 314888.3142 608879.2226 1459874.161 87172.17602 10.35574017 16.70142951 33.7983472 1.593167237 23.50506779 6.639777285 3.612257128 6.984788615 16.74701983 1 16.4115801 -6.285273003 23.76677675 7.159283408 17.21967775 0.257512169 8.652581675 620.3265074 618583.7146 2.993142568 2.641499531 5.18E-07 6.285273003 10.06039434 NPYLLS(ph)EEEDDDVDGDVNVEKNETEPPKGK ddPTM_HeLa_A485_30min_R1 1 NPYLLSEEEDDDVDGDVNVEKNETEPPKGK 30 2 G3V5V3;O60524-4;O60524-5;O60524-3;O60524 G3V5V3 NEMF Nuclear export mediator factor NEMF 1 0 NPYLLS(1)EEEDDDVDGDVNVEKNETEPPKGK 65.345 0.003052 296390000 84793 96772 125060 129180 190850 127000 220020 353010 129220 237800 TRUE FALSE FALSE 103654.9103 108088.6436 171324.8982 136236.7763 171848.3039 133649.5236 173010.9296 266433.744 155153.2687 178520.8364 0.580632 0.605467943 0.959691326 0.763142158 0.962623229 0.748649437 0.969135778 1.492451802 0.869104536 1 17.44573295 -4.715248071 0.384446346 1.117641902 0.309663084 0.408534441 0.189065499 4.136740692 0.628063482 0.175394455 1.498438164 1.93E-05 4.715248071 -0.807978818 NQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A485_30min_R1 1 NQASDSENEELPKPR 15 1 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 2 0 NQAS(1)DS(1)ENEELPKPR 59.469 0.0032661 0 496770 291040 212120 926720 410390 290740 498110 323960 318840 1050700 TRUE FALSE FALSE 607274.7727 325074.5963 290592.015 977344.367 369530.1306 305962.6968 391684.7293 244508.3021 382828.2634 788779.8267 0.769891359 0.412123365 0.368407007 1.239058523 0.468483242 0.387893664 0.496570419 0.309982956 0.485342361 1 19.58926313 -10.19859042 4.90514719 1.000052542 0.543993467 0.213960557 0.25940015 0.000155369 2.54E-05 0.257369991 0.0624141 6.33E-11 10.19859042 -0.456059075 NQAS(ph)DS(ph)ENEELPKPR ddPTM_HeLa_A486_30min_R1 3 NQASDSENEELPKPR 15 1 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 2 0 NQAS(1)DS(1)ENEELPKPR;NQAS(1)DS(1)ENEELPKPR;NQAS(1)DS(1)ENEELPKPR ;; 110.67 0.00025088 1199140000 1933750 1906250 752950 806710 1225250 2307020 2449240 2083910 1607070 2884930 TRUE FALSE FALSE 1798204.111 1755191.808 1044512.405 1878061.649 1071567.72 2022403.328 1836414.247 1609449.184 1746372.122 2162524.75 0.831529956 0.811640101 0.483005989 0.868457875 0.495516974 0.935204708 0.849199181 0.74424544 0.807561681 1 21.04428521 -6.30141388 24.99717899 0.850129841 0.701863985 0.269542364 0.13777474 821.1403831 513479.7046 0.047200595 0.041627537 5.00E-07 6.30141388 -0.148265855 NQATSATSEKDNDDDQS(ph)DKGTYTIELENPNSEEVEAR ddPTM_HeLa_A485_30min_R1 3 NQATSATSEKDNDDDQSDKGTYTIELENPNSEEVEAR 37 2 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 NQATSATSEKDNDDDQS(0.998)DKGT(0.002)YTIELENPNSEEVEAR;NQATSATSEKDNDDDQS(0.887)DKGT(0.085)YT(0.027)IELENPNSEEVEAR;NQATSATSEKDNDDDQS(1)DKGTYTIELENPNSEEVEAR ;; 409.33 1.58E-220 1433900000 357226 211671 111068 930190 376378 307263 673040 501230 239812 1427740 TRUE FALSE FALSE 436689.6913 236424.0822 152156.6751 981003.9243 338904.4848 323350.8156 529239.5058 378302.5566 287940.0687 1071830.694 0.407424133 0.22057969 0.141959617 0.915260153 0.316192181 0.301680869 0.493771553 0.352949919 0.268643239 1 20.0316456 -10.99234528 2.677409555 1.589168638 0.38228759 0.460378184 0.201412274 91643580.47 43268082.88 333337062.1 0.050146705 1.02E-11 10.99234528 -1.206881048 NQATSATSEKDNDDDQS(ph)DKGTYTIELENPNSEEVEAR ddPTM_HeLa_A486_30min_R1 2 NQATSATSEKDNDDDQSDKGTYTIELENPNSEEVEAR 37 2 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 NQATSATSEKDNDDDQS(1)DKGTYTIELENPNSEEVEAR;NQATSATSEKDNDDDQS(0.993)DKGT(0.006)YTIELENPNSEEVEAR ; 407.51 1.88E-220 1749760000 511670 352030 108464 601370 317040 627350 1021870 763400 342530 1566750 TRUE FALSE FALSE 475804.5753 324133.8607 150464.1656 1400019.752 277273.8869 549953.9354 766187.3178 589590.4849 372220.7762 1174425.602 0.405138116 0.275993524 0.128117239 1.192088923 0.23609319 0.468274818 0.652393235 0.50202455 0.316938574 1 20.16352389 -11.34999453 2.209352971 4.143941243 0.47018153 0.245661872 0.281531067 54672383.4 5089314.528 861524539.3 0.072070771 4.47E-12 11.34999453 -3.673759713 NQGETPTTEVPAPFFLPASLSANNT(ph)PTRR ddPTM_HeLa_A485_30min_R1 2 NQGETPTTEVPAPFFLPASLSANNTPTRR 29 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 NQGETPTTEVPAPFFLPAS(0.258)LS(0.218)ANNT(0.399)PT(0.124)RR;NQGETPTTEVPAPFFLPAS(0.209)LS(0.158)ANNT(0.492)PT(0.14)RR ; 81.304 0.0025843 181913000 99911 113536 92500 122463 148971 95032 154861 137022 87364 159621 TRUE FALSE FALSE 122135.8573 126813.0476 126719.5992 129152.8436 134138.9242 100007.7286 121773.6823 103417.1397 104897.1534 119830.4223 1.019239146 1.058270889 1.057491051 1.077796782 1.119406254 0.834577119 1.01621675 0.863029084 0.875379986 1 16.8706347 -6.255011424 24.99968616 0.915428415 1.066120618 0.622170175 0.057885062 334.6463114 1301511.588 0.018707812 0.018280516 5.56E-07 6.255011424 0.150692203 NQGETPTTEVPAPFFLPASLSANNT(ph)PTRR ddPTM_HeLa_A486_30min_R1 1 NQGETPTTEVPAPFFLPASLSANNTPTRR 29 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 NQGETPTTEVPAPFFLPAS(0.008)LS(0.021)ANNT(0.77)PT(0.2)RR 105.72 0.00024871 65240000 60689 56077 38080 24954 51533 47628 67879 67302 42757 72847 TRUE FALSE FALSE 56435.0145 51633.25429 52825.59582 58094.17311 45069.25061 41752.14161 50894.95625 51978.80379 46463.21119 54605.63705 1.033501623 0.945566375 0.967401878 1.063886006 0.825358938 0.764612298 0.932045829 0.951894467 0.850886716 1 15.73676227 -5.765111679 24.99998563 0.881147368 0.996002564 0.391937434 0.06978998 103.5356921 704842.4416 0.02208773 0.026022633 1.72E-06 5.765111679 0.114855196 NQGGYDRYS(ph)GGNYR ddPTM_HeLa_A485_30min_R1 4 NQGGYDRYSGGNYR 14 1 P98179 P98179 RBM3 RNA-binding protein 3 1 0 NQGGYDRYS(1)GGNYR;NQGGYDRYS(1)GGNYR;NQGGYDRYS(1)GGNYR;NQGGYDRYS(1)GGNYR ;;; 174.68 8.57E-13 1988630000 755230 831520 796000 999880 1182790 627870 955510 773780 735590 1366530 TRUE FALSE FALSE 923228.308 928759.0307 1090473.524 1054500.913 1065027.275 660744.3023 751357.4827 584009.2418 883216.1658 1025879.22 0.899938599 0.905329802 1.062964824 1.027899671 1.038160491 0.644076115 0.732403453 0.569276802 0.860935818 1 19.96842946 -6.256077107 24.98441459 0.732609799 0.988837477 0.455878967 0.12116561 356.2160781 1659717.761 0.039384912 0.038291692 5.55E-07 6.256077107 0.256227678 NQGGYDRYS(ph)GGNYR ddPTM_HeLa_A486_30min_R1 4 NQGGYDRYSGGNYR 14 1 P98179 P98179 RBM3 RNA-binding protein 3 1 0 NQGGYDRYS(0.998)GGNY(0.002)R;NQGGYDRYS(1)GGNYR;NQGGYDRYS(1)GGNYR;NQGGYDRYS(1)GGNYR ;;; 199.41 4.41E-22 2402370000 1172730 1324390 893260 503672 1227360 1341290 1596390 1467200 1160030 1438950 TRUE FALSE FALSE 1090527.683 1219440.513 1239154.194 1172573.87 1073413.064 1175815.277 1196956.337 1133150.589 1260582.334 1078627.554 1.011032658 1.130548268 1.148824902 1.087098012 0.995165625 1.090103134 1.109703097 1.050548528 1.168691018 1 20.04076536 -5.522275726 24.99938883 1.071602397 1.103140727 0.041000927 0.058270922 72.77134133 3017025.729 0.016966097 0.022200725 3.00E-06 5.522275726 0.03153833 NQGGYDRYS(ph)GGNYRDNYDN ddPTM_HeLa_A485_30min_R1 2 NQGGYDRYSGGNYRDNYDN 19 2 P98179 P98179 RBM3 RNA-binding protein 3 1 0 NQGGYDRYS(1)GGNYRDNYDN;NQGGYDRYS(1)GGNYRDNYDN ; 207.47 6.43E-26 3079300000 642740 814740 724460 677220 1354570 790530 1180180 1317690 718690 942430 TRUE FALSE FALSE 785715.2956 910016.7557 992467.9013 714214.8138 1219704.255 831920.9284 928024.9018 994524.4614 862924.4908 707499.5451 1.110552369 1.286243591 1.402782388 1.009491552 1.723964719 1.175860725 1.311696818 1.405689188 1.219682043 1 19.43236969 -8.020143142 19.96535082 0.999999982 1.306695588 0.19911295 0.183714287 151.2545008 149921.969 0.167245152 0.043182508 9.55E-09 8.020143142 0.306695606 NQGGYDRYS(ph)GGNYRDNYDN ddPTM_HeLa_A486_30min_R1 2 NQGGYDRYSGGNYRDNYDN 19 2 P98179 P98179 RBM3 RNA-binding protein 3 1 0 NQGGYDRYS(1)GGNYRDNYDN;NQGGYDRYS(1)GGNYRDNYDN ; 109.68 4.09E-05 2871200000 789280 715060 552580 329990 915430 744480 1060760 1012570 675320 882990 TRUE FALSE FALSE 733955.5478 658396.0414 766553.7746 768233.3968 800608.2334 652633.6269 795346.6284 782029.9152 733857.2813 661883.5567 1.10888923 0.994730923 1.158139928 1.160677568 1.209590758 0.986024838 1.201641316 1.181521897 1.108740766 1 19.3362179 -4.776260081 24.99929893 1.134230991 1.051810055 0.118545736 0.07802537 372.8649021 628943.3712 0.019660724 0.041205783 1.67E-05 4.776260081 -0.082420936 NQGGYGGSSSSS(ph)SYGSGR ddPTM_HeLa_A485_30min_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSS(0.001)S(0.198)S(0.8)S(0.001)YGSGR 166.52 3.94E-12 435700000 228980 237320 219960 296720 442370 217680 527490 442480 234740 432110 TRUE FALSE FALSE 279915.811 265072.5096 301332.3573 312929.0623 398326.0895 229077.3882 414787.4523 333961.0862 281850.1648 324392.9294 0.862891221 0.817134054 0.928911607 0.964660552 1.227912366 0.706172569 1.278657501 1.029495578 0.868854218 1 18.30738285 -5.099214995 2.421476228 1.020680315 0.841921899 0.165000392 0.153612614 0.503972961 5.759867866 0.042960842 0.093055735 7.96E-06 5.099214995 -0.178758416 NQGGYGGSSSSS(ph)SYGSGR ddPTM_HeLa_A486_30min_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGS(0.001)SS(0.001)S(0.212)S(0.783)S(0.003)YGSGR;NQGGYGGSSSS(0.021)S(0.974)S(0.005)YGSGR ; 218.14 2.60E-34 286668000 279025 330297 271615 156374 379025 356781 502782 435363 302910 433882 TRUE FALSE FALSE 259466.7884 304123.0628 376791.6021 364046.5747 331484.1502 312764.9877 376980.6257 336240.3488 329166.4827 325235.1231 0.797782189 0.935086776 1.158520637 1.119333519 1.019213875 0.961658091 1.159101828 1.033837753 1.012087746 1 18.31112354 -4.509220143 4.313197752 1.060238014 0.818451714 0.615017169 0.064794638 0.127865975 5.656135638 0.017098637 0.064115101 3.10E-05 4.509220143 -0.2417863 NQGGYGGSSSSSS(ph)YGSGR ddPTM_HeLa_A485_30min_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSSSS(0.016)S(0.983)YGSGR 246.21 2.07E-45 0 58702 76505 67779 70908 108330 74431 117100 106530 72347 108790 TRUE FALSE FALSE 71760.05738 85451.59424 92853.27262 74781.52449 97544.28483 78328.09207 92080.62838 80403.35047 86866.37929 81670.65513 0.878651668 1.046294953 1.136923323 0.915647418 1.194361484 0.959072655 1.127462835 0.984482742 1.063618005 1 16.31753018 -4.262707561 7.231999998 1.050193592 0.876502512 0.274530652 0.082281857 0.123041338 55.91581167 0.018496368 0.106050925 5.46E-05 4.262707561 -0.17369108 NQGGYGGSSSSSS(ph)YGSGR ddPTM_HeLa_A486_30min_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSSSS(0.04)S(0.96)YGSGR 211.67 8.86E-26 133200000 85847 92366 63632 38281 103990 90963 117130 112970 79908 113210 TRUE FALSE FALSE 79829.56861 85046.58177 88272.01452 89120.10261 90946.60453 79740.9099 87822.83513 87249.19712 86834.48978 84861.47913 0.940704421 1.002181233 1.040189441 1.050183234 1.071706568 0.939659675 1.034896351 1.028136653 1.023249779 1 16.3728222 -4.320929947 3.031523304 1.024510873 0.932670444 0.357317132 0.033318606 0.352491741 5.077234122 0.00870011 0.071950812 4.78E-05 4.320929947 -0.091840429 NQGGYGGSSSSSSYGS(ph)GR ddPTM_HeLa_A485_30min_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSSSSSYGS(1)GR;NQGGYGGSSSSSSYGS(1)GR ; 333.39 1.36E-101 556670000 238140 300420 284060 298670 461610 244280 415080 358670 268320 447140 TRUE FALSE FALSE 291113.4214 335551.5057 389145.6147 314985.5858 415650.4876 257070.1231 326394.7671 270705.6201 322169.3628 335676.227 0.867244678 0.999628448 1.159288575 0.938361315 1.238248211 0.765827611 0.972349964 0.80644859 0.959762226 1 18.35671084 -6.280099841 24.9986562 0.893247749 1.039199583 0.255574098 0.118824175 1118.165704 1497956.167 0.04001612 0.035353218 5.25E-07 6.280099841 0.145951834 NQGGYGGSSSSSSYGS(ph)GR ddPTM_HeLa_A486_30min_R1 3 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSSSSSYGS(1)GR;NQGGYGGSSSSSSYGS(1)GR;NQGGYGGSSSSSSYGS(1)GR ;; 413.75 2.36E-163 612950000 417398 367265 258134 146819 408103 387646 475919 497048 352897 497709 TRUE FALSE FALSE 388140.5556 338161.5838 358090.3979 341802.0518 356914.9163 339822.1778 356839.0324 383881.0209 383486.3961 373079.4269 1.040369765 0.90640641 0.959823491 0.9161643 0.956672737 0.910857456 0.956469338 1.028952532 1.027894782 1 18.50912328 -7.207538906 5.133499228 1.021436714 0.945209825 0.425561261 0.036805712 0.173927499 10.16367165 0.017198422 0.009515911 6.20E-08 7.207538906 -0.076226889 NQGGYGGSSSSSSYGSGR ddPTM_HeLa_A485_30min_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ; ; 195.23 8.26E-22 56362000 3624.43 3248.19 3234.34 3413.37 5095.9 3049 5297.1 4992.6 3314.1 5496.1 FALSE FALSE TRUE 4430.671949 3628.037565 4430.856958 3599.83376 4588.534303 3208.640925 4165.331312 3768.157022 3979.209471 4126.023418 1.073835871 0.879306101 1.07388071 0.872470511 1.11209604 0.777659407 1.009526823 0.913266029 0.964417568 1 12.01053629 -6.238349811 24.99610188 0.93233759 0.992245808 0.112694722 0.095205756 2022.56496 2189571.842 0.028962159 0.028944958 5.78E-07 6.238349811 0.059908218 NQGGYGGSSSSSSYGSGR ddPTM_HeLa_A486_30min_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-2;P09651;P09651-3;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ; ; 136.51 1.92E-08 0 13867.6 13348 12273.2 3400.1 24689.7 11320 17024.6 16882.2 15073.5 11960.2 FALSE FALSE TRUE 12895.55285 12290.25587 17025.71173 7915.604632 21592.8876 9923.453493 12764.86501 13038.4916 16380.08312 8965.288072 1.438386893 1.370871272 1.899070235 0.882916931 2.408499028 1.106875029 1.423809799 1.454330468 1.827055972 1 13.13013423 -10.20861303 6.242466464 0.999993931 1.528877048 0.135118769 0.405560018 3.17E-05 4.02E-06 0.363176367 0.088082197 6.19E-11 10.20861303 0.528883118 NQGIEGS(ph)PGGR ddPTM_HeLa_A486_30min_R1 1 NQGIEGSPGGR 11 0 Q6ZUT6;H0YM82;Q6ZUT6-3;Q6ZUT6-4 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 0 NQGIEGS(1)PGGR 80.507 0.0041072 0 251140 276790 216810 68710 299260 240940 284730 287200 239230 250600 TRUE FALSE FALSE 233536.3829 254856.1523 300764.6384 159960.3524 261724.0203 211215.2725 213487.5424 221810.8295 259966.649 187848.1289 1.243219106 1.356713819 1.601105319 0.851540834 1.393274566 1.124393806 1.13649012 1.180798717 1.383919289 1 17.51920722 -5.242712746 24.99977441 1.168592018 1.395982813 0.299969795 0.172011616 1103.194175 1472745.608 0.04480113 0.077432039 5.72E-06 5.242712746 0.227390795 NQIHVKS(ph)PPREGSQGELTPANSQSR ddPTM_HeLa_A485_30min_R1 2 NQIHVKSPPREGSQGELTPANSQSR 25 2 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 NQIHVKS(0.782)PPREGS(0.218)QGELTPANSQSR;NQIHVKS(1)PPREGSQGELTPANSQSR ; 130.72 2.25E-06 714490000 91641 180162 123324 127489 331180 235450 480060 644860 122863 258360 TRUE FALSE FALSE 112026.2243 201230.3787 168946.6795 134453.4013 298206.5564 247777.7979 377491.2593 486707.0739 147520.4771 193955.6068 0.577586934 1.037507407 0.871058498 0.693217399 1.537499025 1.277497475 1.946276602 2.509373573 0.760588877 1 17.56536696 -5.785025531 9.115365064 1.592352744 0.81755808 0.342330878 0.472786633 0.269592303 94.97106172 0.145573587 0.167966527 1.64E-06 5.785025531 -0.774794664 NQIHVKS(ph)PPREGSQGELTPANSQSR ddPTM_HeLa_A486_30min_R1 1 NQIHVKSPPREGSQGELTPANSQSR 25 2 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 NQIHVKS(0.998)PPREGS(0.002)QGELTPANSQSR 183.81 1.21E-20 319890000 61427 36248 32464 42696 90104 50058 107250 109000 39233 90393 TRUE FALSE FALSE 57121.28451 33375.57647 45034.93022 99398.44574 78802.31613 43882.35291 80414.91563 84183.07945 42633.74803 67758.00444 0.843018991 0.492570239 0.664643692 1.466962414 1.162996413 0.64763349 1.186795808 1.242407892 0.629206075 1 16.04810377 -5.052497615 24.89939873 1.053055798 0.645497301 0.319930699 0.254239747 340.9314557 161701.8454 0.069016805 0.119542055 8.86E-06 5.052497615 -0.407558497 NQIPRT(ph)PENLITEIR ddPTM_HeLa_A485_30min_R1 2 NQIPRTPENLITEIR 15 1 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 NQIPRT(1)PENLITEIR;NQIPRT(1)PENLITEIR ; 169.62 4.34E-12 388180000 123991 198496 169871 163404 329270 191576 327460 373110 158270 235300 TRUE FALSE FALSE 151572.3702 221708.3805 232713.3518 172330.3468 296486.7227 201606.6231 257495.4959 281604.1875 190033.3373 176644.0404 0.858066708 1.255113844 1.317414113 0.975579739 1.678441696 1.141315737 1.457708368 1.59419014 1.075798181 1 17.43048555 -3.807010391 1.447996062 1.313039109 4.70E-13 0.218336508 0.230749037 5.528811335 4.326551253 0.062223332 14.48203719 0.000155952 3.807010391 -1.313039109 NQIPRT(ph)PENLITEIR ddPTM_HeLa_A486_30min_R1 2 NQIPRTPENLITEIR 15 1 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 NQIPRT(1)PENLITEIR;NQIPRT(1)PENLITEIR ; 183.06 9.99E-18 288240000 176259 128163 124634 96927 230341 150572 245920 251300 114602 227690 TRUE FALSE FALSE 163904.1543 118006.8971 172895.6226 225650.9544 201449.4839 131995.9575 184388.2149 194084.4758 124535.7936 170674.942 0.960329339 0.691413137 1.01301117 1.322109454 1.180310839 0.773376314 1.080347313 1.137158587 0.729666536 1 17.38089174 -4.893732431 7.897137094 1.044940005 0.82770133 0.171231794 0.1778554 0.372894491 24.96096937 0.047488143 0.099651102 1.28E-05 4.893732431 -0.217238676 NQK(ac)LTATTQK ddPTM_HeLa_A485_30min_R1 2 NQKLTATTQK 10 1 P12270 P12270 TPR Nucleoprotein TPR 0 1 ; NQK(1)LTATTQK;NQK(1)LTATTQK 238.73 2.75E-26 160619000 140384 138007 101426 218093 219902 125057 246975 204162 121034 307865 FALSE TRUE FALSE 171611.9365 154145.7181 138947.6981 230006.8683 198007.7848 131604.7911 194206.7736 154090.9494 145324.4136 231119.9213 0.742523342 0.66695124 0.601193083 0.995184089 0.856731794 0.569422101 0.840285738 0.666714269 0.628783589 1 17.81828209 -11.34885219 2.28339729 2.675756795 0.732348533 0.291817884 0.126239787 6500066.78 750405.8016 56425889.47 0.032682561 4.48E-12 11.34885219 -1.943408262 NQK(ac)LTATTQK ddPTM_HeLa_A486_30min_R1 2 NQKLTATTQK 10 1 P12270 P12270 TPR Nucleoprotein TPR 0 1 ; NQK(1)LTATTQK;NQK(1)LTATTQK 297.13 2.45E-57 148361000 271180 224090 114536 127307 202958 269160 354910 301550 197034 394520 FALSE TRUE FALSE 252171.6824 206332.2923 158887.4066 296377.1297 177501.1151 235953.7758 266107.7641 232893.6478 214113.0658 295729.6241 0.852710252 0.697705862 0.537272541 1.002189519 0.600214184 0.797869935 0.899834655 0.787522212 0.724016292 1 18.17391924 -14 0.188150845 1.996661488 0.721707477 0.223667976 0.130077661 203.8860415 1.988584382 76.09522338 0.356829066 1.00E-14 14 -1.274954011 NQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_HeLa_A485_30min_R1 5 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 NQKPSQVNGAPGS(0.975)PT(0.025)EPAGQK;NQKPSQVNGAPGS(0.999)PT(0.001)EPAGQK;NQKPSQVNGAPGS(0.991)PT(0.009)EPAGQK;NQKPSQVNGAPGS(0.999)PT(0.001)EPAGQK;NQKPSQVNGAPGS(0.833)PT(0.167)EPAGQK ;;;; 233.08 4.83E-37 11436500000 5615450 3968860 2445720 9299100 6700340 4259490 9681900 7907020 3851570 13928200 TRUE FALSE FALSE 6864587.479 4432983.653 3350493.603 9807086.286 6033230.623 4482510.31 7613282.971 5967810.947 4624544.77 10456156.07 0.656511574 0.423959209 0.320432631 0.937924627 0.577002732 0.428695811 0.728114894 0.570746162 0.442279624 1 23.31784924 -10.86102886 2.688012895 1.183617587 0.565996407 0.371842256 0.169582762 34253999.28 20225289.54 40113254.45 0.043918686 1.38E-11 10.86102886 -0.61762118 NQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_HeLa_A486_30min_R1 4 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 NQKPSQVNGAPGS(0.862)PT(0.137)EPAGQK;NQKPSQVNGAPGS(0.964)PT(0.036)EPAGQK;NQKPSQVNGAPGS(0.991)PT(0.009)EPAGQK;NQKPSQVNGAPGS(0.995)PT(0.005)EPAGQK ;;; 170.53 4.39E-14 11608900000 3007850 2198800 916020 1614905 1943760 2897760 4313110 3433430 1943740 4689810 TRUE FALSE FALSE 2797015.248 2024559.08 1270727.476 3759580.453 1699955.496 2540263.833 3233924.259 2651712.94 2112224.948 3515451.05 0.795634815 0.575903078 0.361469256 1.069444688 0.483566823 0.722599688 0.919917306 0.754302336 0.600840381 1 21.74527838 -14 0.134084079 1.998076149 0.582191639 0.174140308 0.196195089 248.0943252 2.071366799 66.65531884 1.356609175 1.00E-14 14 -1.41588451 NQKPSQVNGAPGSPT(ph)EPAGQK ddPTM_HeLa_A485_30min_R1 1 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 NQKPSQVNGAPGS(0.39)PT(0.61)EPAGQK 162.47 2.16E-13 7718400000 881700 611310 358180 1400100 1029700 624130 1437200 1221300 528020 2023400 TRUE FALSE FALSE 1077831.123 682797.3868 490685.6871 1476583.918 927179.4525 656808.4817 1130130.479 921774.2601 633988.7707 1519003.618 0.709564553 0.449503463 0.323031283 0.972073997 0.610386599 0.432394284 0.743994593 0.606828219 0.417371469 1 20.53469388 -10.45150305 3.519214452 1.004829403 0.586284053 0.319466577 0.181695362 254967642.7 449132436.8 12781137.82 0.045439785 3.54E-11 10.45150305 -0.418545349 NQKPSQVNGAPGSPT(ph)EPAGQK ddPTM_HeLa_A486_30min_R1 1 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 NQKPSQVNGAPGS(0.216)PT(0.784)EPAGQK 180.21 5.40E-19 686900000 673890 518800 181870 344940 429160 623390 925180 745520 438940 1047400 TRUE FALSE FALSE 626653.791 477688.3986 252294.9346 803037.7523 375330.751 546482.48 693690.1784 575781.3706 476987.6726 785124.2226 0.798158779 0.608423973 0.32134397 1.022816173 0.478052696 0.696045879 0.88354194 0.733363402 0.607531469 1 19.58256141 -14 0.173785558 2.256282873 0.610961186 0.200928944 0.188784134 212.8724506 2.023554756 92.22984758 0.636052036 1.00E-14 14 -1.645321686 NQNYLVPS(ph)PVLR ddPTM_HeLa_A485_30min_R1 2 NQNYLVPSPVLR 12 0 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 0 NQNYLVPS(1)PVLR;NQNYLVPS(1)PVLR ; 186.51 5.20E-13 179326000 308630 370280 352030 376560 573400 310570 495310 463340 310980 605800 TRUE FALSE FALSE 377283.6787 413581.025 482260.5462 397130.5193 516310.2827 326830.965 389482.9722 349705.1385 373390.8335 454785.2089 0.82958652 0.909398584 1.060413876 0.873226551 1.135283805 0.718649065 0.856410817 0.768945717 0.821026775 1 18.79482581 -6.282251722 24.98226755 0.820028365 0.959264864 0.261064149 0.107014579 1038.43245 1246487.174 0.035987775 0.031771849 5.22E-07 6.282251722 0.139236499 NQNYLVPS(ph)PVLR ddPTM_HeLa_A486_30min_R1 2 NQNYLVPSPVLR 12 0 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 0 NQNYLVPS(1)PVLR;NQNYLVPS(1)PVLR ; 140.31 3.16E-06 206290000 391110 357100 262010 162302 439740 363200 485920 466520 317940 530430 TRUE FALSE FALSE 363695.2087 328802.0955 363467.2889 377847.2583 384583.7088 318392.0767 364337.6765 360303.5801 345499.2952 397606.8755 0.914710562 0.826952741 0.914137333 0.950303633 0.967246123 0.800771054 0.916326399 0.906180457 0.868946984 1 18.60098318 -10.05525613 4.159225183 1.000011583 0.896430694 0.289670102 0.04877397 66815522.66 112263516 10706.501 0.012376965 8.81E-11 10.05525613 -0.103580889 NQPTVYIAAS(ph)PPNTDELMSR ddPTM_HeLa_A485_30min_R1 3 NQPTVYIAASPPNTDELMSR 20 0 A0A1B0GV57;Q9NYJ8-2;Q9NYJ8 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 0 NQPTVYIAAS(0.999)PPNT(0.001)DELMSR;NQPTVYIAAS(0.996)PPNT(0.004)DELMSR;NQPTVYIAAS(0.992)PPNT(0.007)DELMSR ;; 176.11 1.86E-16 245135000 159857 163260 160330 213115 274356 159894 245013 229949 144738 263667 TRUE FALSE FALSE 195416.6381 182351.8368 219642.7389 224756.9328 247040.1533 168265.8026 192663.971 173553.6472 173785.589 197939.6693 0.987253534 0.921249578 1.109644871 1.135482006 1.248057826 0.850086307 0.973346938 0.876800733 0.877972513 1 17.59470125 -6.289644709 24.99854283 0.911547941 1.07619115 0.446522629 0.091566712 760.237614 673800.3396 0.034882065 0.030768304 5.13E-07 6.289644709 0.164643209 NQPTVYIAAS(ph)PPNTDELMSR ddPTM_HeLa_A486_30min_R1 3 NQPTVYIAASPPNTDELMSR 20 0 A0A1B0GV57;Q9NYJ8-2;Q9NYJ8 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 0 NQPTVYIAAS(0.994)PPNT(0.006)DELMSR;NQPTVYIAAS(0.995)PPNT(0.005)DELMSR;NQPTVYIAAS(0.826)PPNT(0.151)DELMS(0.024)R ;; 203.26 2.47E-26 210294000 211482 194508 119954 86174 197969 191883 243248 238885 167268 259752 TRUE FALSE FALSE 196658.2039 179094.4777 166403.4013 200617.427 173137.882 168210.4264 182384.7776 184496.1003 181766.9249 194708.4085 1.010013925 0.919808647 0.854628737 1.03034804 0.889216256 0.86390941 0.936707249 0.947550759 0.933534028 1 17.57095566 -8.547425588 1.136210859 0.999958889 0.927524885 0.126217537 0.053550348 4.962099258 8.324931207 0.051827593 0.015852785 2.84E-09 8.547425588 -0.072434004 NQQGFS(ph)PK ddPTM_HeLa_A486_30min_R1 1 NQQGFSPK 8 0 C9JKA9;Q9NS87-4;Q9NS87-2;Q9NS87;D6RCT7 C9JKA9 KIF15 Kinesin-like protein KIF15;Kinesin-like protein 1 0 NQQGFS(1)PK 113.46 0.001071 262190000 181320 166680 79081 114670 173260 217850 290910 242090 146180 366810 TRUE FALSE FALSE 168610.4043 153471.6698 109703.2811 266957.5551 151528.1152 190973.8819 218121.2411 186971.3918 158851.0001 274958.3885 0.613221532 0.558163257 0.398981394 0.970901657 0.551094717 0.694555576 0.793288185 0.679998864 0.577727419 1 18.06885378 -14 0.149020056 2.178965251 0.547047867 0.344877069 0.145978276 158.7781192 1.408011167 55.97786606 0.756026797 1.00E-14 14 -1.631917384 NQS(ph)PTEAEKPASSSLPSSPPPQLLTR ddPTM_HeLa_A485_30min_R1 3 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 NQS(0.871)PT(0.129)EAEKPASSSLPSSPPPQLLTR;NQS(0.992)PT(0.008)EAEKPASSSLPSSPPPQLLTR;NQS(0.941)PT(0.059)EAEKPASSSLPSSPPPQLLTR ;; 209.41 5.98E-29 918020000 318186 268039 196760 433013 357504 285350 486008 408460 234021 630702 TRUE FALSE FALSE 388965.378 299383.8294 269549.7119 456667.4037 321909.6465 300290.4848 382168.4205 308284.5446 280986.8681 473479.5986 0.821503987 0.632305659 0.569295304 0.964492251 0.679880712 0.634220536 0.807148654 0.651104177 0.593450846 1 18.85294274 -10.6771237 3.105103306 1.029214937 0.705842755 0.363930865 0.116629714 114104500.3 111890815.5 26278959.64 0.029571247 2.10E-11 10.6771237 -0.323372183 NQS(ph)PTEAEKPASSSLPSSPPPQLLTR ddPTM_HeLa_A486_30min_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 NQS(0.853)PT(0.147)EAEKPASSSLPSSPPPQLLTR;NQS(0.975)PT(0.025)EAEKPASSSLPSSPPPQLLTR ; 217.1 2.51E-38 776680000 123380 114050 58337 78533 112760 132640 169510 160540 100070 194620 TRUE FALSE FALSE 114731.6991 105012.2626 80926.64872 182828.7928 98616.58935 116276.2254 127096.8051 123988.5466 108744.1482 145885.8852 0.78644825 0.719824694 0.554725693 1.253231542 0.675984446 0.797035472 0.871207005 0.84990091 0.745405548 1 17.15448078 -14 0.105714976 1.535190617 0.702703182 0.098920617 0.172878622 455.0966162 3.225749415 54.85902378 2.460391789 1.00E-14 14 -0.832487436 NQS(ph)PVLEPVGR ddPTM_HeLa_A486_30min_R1 1 NQSPVLEPVGR 11 0 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 NQS(1)PVLEPVGR 134.13 2.87E-05 539570000 483730 464160 273580 153600 525800 483690 550000 597070 387980 547190 TRUE FALSE FALSE 449823.025 427378.2712 379517.5027 357588.5625 459849.2611 424017.2456 412384.1827 461130.1949 421610.4188 410170.0624 1.096674444 1.041953839 0.925268657 0.871805613 1.121118539 1.033759615 1.005398054 1.124241473 1.027891739 1 18.64586267 -5.78815383 24.99941093 1.055031332 0.983880524 0.187923424 0.069231266 386.7313127 361901.5798 0.022677236 0.025720481 1.63E-06 5.78815383 -0.071150808 NQS(ph)SEDILR ddPTM_HeLa_A485_30min_R1 1 NQSSEDILR 9 0 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 NQS(0.941)S(0.059)EDILR 93.766 0.0029507 416380000 272690 289420 246980 335910 365870 314630 376610 368530 268420 434110 TRUE FALSE FALSE 333348.9497 323265.1514 338348.1797 354259.9127 329442.6982 331103.5403 296144.1969 278147.4397 322289.4319 325894.3662 1.022874233 0.99193231 1.038214264 1.087039082 1.010887982 1.015984241 0.908712232 0.853489561 0.988938335 1 18.31404489 -6.701771857 5.606528133 0.925636559 1.029582131 0.482473862 0.045068919 0.153403468 9.602676237 0.01766449 0.013383492 1.99E-07 6.701771857 0.103945571 NQS(ph)SEDILR ddPTM_HeLa_A486_30min_R1 2 NQSSEDILR 9 0 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 NQS(0.992)S(0.008)EDILR;NQS(0.817)S(0.183)EDILR ; 122.42 0.00034644 823460000 823980 741580 522500 346970 837980 860390 1047200 985550 789130 1058600 TRUE FALSE FALSE 766223.257 682814.5 724825.993 807763.6949 732872.7345 754243.8296 785179.4838 761161.7794 857532.4238 793519.6697 0.965600837 0.860488437 0.913431665 1.017950437 0.923572235 0.950504264 0.989489629 0.959222321 1.080669398 1 19.59790646 -6.655787232 0.565915583 1.026246611 0.917049858 0.374257184 0.045810687 0.936903476 0.627978907 0.041981343 0.035596945 2.21E-07 6.655787232 -0.109196752 NQSHSS(ph)PSVS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 NQSHSSPSVSPSR 13 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 2 0 NQSHS(0.132)S(0.859)PS(0.009)VS(0.944)PS(0.056)R 146.2 1.80E-07 164210000 116020 148730 129560 136460 188260 119660 181380 177560 111710 179290 TRUE FALSE FALSE 141828.2487 166122.6797 177489.6354 143914.4643 169516.1734 125925.2126 142626.6813 134013.1316 134129.1723 134596.3026 1.053730645 1.234229147 1.318681361 1.069230443 1.259441531 0.935577056 1.059662699 0.995667258 0.996529398 1 17.03827925 -6.262075652 24.9999933 1.001102447 1.190448909 0.582606804 0.080175194 42.44157195 1667570.172 0.026912255 0.02512976 5.47E-07 6.262075652 0.189346462 NQSHSS(ph)PSVS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 NQSHSSPSVSPSR 13 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 2 0 NQSHS(0.021)S(0.979)PS(0.007)VS(0.991)PS(0.002)R;NQSHS(0.397)S(0.6)PS(0.004)VS(0.947)PS(0.053)R ; 236.75 7.52E-32 153920000 341790 314700 224310 97971 342370 292220 357110 360460 287710 370240 TRUE FALSE FALSE 317832.286 289762.0259 311168.8392 228081.4392 299426.7621 256168.8675 267757.3009 278391.1268 312648.9345 277529.4941 1.145219851 1.044076511 1.121209982 0.821827748 1.078900688 0.923032949 0.964788632 1.003104653 1.126543092 1 18.08228157 NQSLGQS(ph)APSLTAGLK ddPTM_HeLa_A485_30min_R1 3 NQSLGQSAPSLTAGLK 16 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 NQSLGQS(0.998)APS(0.002)LTAGLK;NQSLGQS(1)APSLTAGLK;NQSLGQS(1)APSLTAGLK ;; 361.2 4.04E-105 643840000 463746 425010 318044 614641 700814 422466 769474 710499 397276 856129 TRUE FALSE FALSE 566904.6978 474711.2224 435701.7105 648217.2815 631038.4975 444585.6665 605069.5939 536248.0062 477005.6492 642711.7962 0.882051179 0.738606674 0.677911489 1.008566025 0.981837429 0.691734101 0.941432221 0.834352208 0.74217659 1 19.29381243 -11.46935765 2.312054598 3.014743095 0.834424821 0.163222043 0.113279485 13574754.23 914844.4379 144562406.3 0.030769413 3.39E-12 11.46935765 -2.180318274 NQSLGQS(ph)APSLTAGLK ddPTM_HeLa_A486_30min_R1 3 NQSLGQSAPSLTAGLK 16 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 NQSLGQS(1)APSLTAGLK;NQSLGQS(1)APSLTAGLK;NQSLGQS(1)APSLTAGLK ;; 349.59 2.47E-104 665960000 849520 757380 413240 355380 727620 879750 1169280 1034650 628940 1137030 TRUE FALSE FALSE 789973.0349 697362.4505 573257.595 827342.5999 636355.1148 771215.3896 876713.7766 799082.7813 683457.0256 852310.2872 0.926860847 0.81820255 0.672592603 0.970705871 0.746623764 0.904852847 1.028632166 0.937549145 0.801887571 1 19.70101922 -6.508627992 23.73372873 0.941088628 0.82589671 0.247051055 0.095672819 495.4569659 825156.1264 0.034138901 0.028942173 3.10E-07 6.508627992 -0.115191917 NQSLGQSAPS(ph)LTAGLK ddPTM_HeLa_A485_30min_R1 1 NQSLGQSAPSLTAGLK 16 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 NQSLGQS(0.334)APS(0.533)LT(0.133)AGLK 83.617 0.0023753 120470000 152080 130060 95550 187630 206630 104680 226950 220600 117150 268480 TRUE FALSE FALSE 185909.6713 145269.3856 130897.9212 197879.7518 186057.1917 110160.8829 178460.2785 166497.5041 140660.9304 201552.877 0.922386592 0.720750742 0.649447049 0.981775873 0.923118511 0.546560707 0.885426599 0.826073567 0.697885997 1 17.62079885 -10.31820291 4.227468012 1.000268374 0.793924411 0.178334904 0.132109164 0.000335502 5.41E-05 0.127541397 0.030893038 4.81E-11 10.31820291 -0.206343963 NQSPTEAEKPASSSLPS(ph)SPPPQLLTR ddPTM_HeLa_A485_30min_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 NQSPTEAEKPASS(0.009)S(0.027)LPS(0.588)S(0.376)PPPQLLTR;NQSPTEAEKPASSS(0.009)LPS(0.495)S(0.495)PPPQLLTR ; 202.61 1.27E-28 1070280000 872900 749540 616530 1331870 1222120 728460 1406310 1204350 679920 1791080 TRUE FALSE FALSE 1067073.594 837192.1829 844610.103 1404626.686 1100441.442 766601.0392 1105840.38 908981.2742 816373.7074 1344596.718 0.793601218 0.622634409 0.628151245 1.044645332 0.818417468 0.570134546 0.822432752 0.676025206 0.607151346 1 20.3587421 NQSPTEAEKPASSSLPS(ph)SPPPQLLTR ddPTM_HeLa_A486_30min_R1 4 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 NQSPTEAEKPASSS(0.003)LPS(0.822)S(0.174)PPPQLLTR;NQSPTEAEKPASS(0.008)S(0.029)LPS(0.578)S(0.385)PPPQLLTR;NQSPTEAEKPAS(0.008)S(0.007)S(0.002)LPS(0.488)S(0.488)PPPQLLT(0.007)R;NQSPTEAEKPASS(0.001)S(0.009)LPS(0.48)S(0.48)PPPQLLT(0.031)R ;;; 195.01 2.56E-21 1331680000 1376550 1129320 650910 646208 1122720 1393860 1883180 1732830 1089650 2019690 TRUE FALSE FALSE 1280060.954 1039828.57 902959.784 1504404.882 981897.9887 1221899.725 1411988.446 1338302.436 1184101.739 1513946.478 0.845512686 0.686833112 0.596427811 0.993697534 0.648568495 0.807095721 0.932654137 0.883982661 0.782129194 1 20.52988277 -7.700297334 0.229127566 1.043256588 0.687810737 0.267638017 0.114387142 3.328567386 0.756602809 0.47064005 0.377943 1.99E-08 7.700297334 -0.35544585 NQSQGYNQWQQGQFWGQKPWSQHYHQGYY ddPTM_HeLa_A485_30min_R1 2 NQSQGYNQWQQGQFWGQKPWSQHYHQGYY 29 1 Q00839-2;Q00839;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 357.25 1.10E-143 170746000 49250 69546 51336 23300 99440 52270 89284 82156 31817 61190 FALSE FALSE TRUE 60205.49259 77678.79973 70327.32267 24572.82 89539.40444 55006.77638 70207.74402 62007.11218 38202.38006 45936.45912 1.310625454 1.691005385 1.530969605 0.534930651 1.94920127 1.197453557 1.528366473 1.349845273 0.83163528 1 15.48735203 -7.727233392 7.619696057 0.915899428 1.39132103 0.223416774 0.35106958 0.263364778 48.2896647 0.240970397 0.086892326 1.87E-08 7.727233392 0.475421601 NQSQGYNQWQQGQFWGQKPWSQHYHQGYY ddPTM_HeLa_A486_30min_R1 2 NQSQGYNQWQQGQFWGQKPWSQHYHQGYY 29 1 Q00839-2;Q00839;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 260.93 1.07E-69 99212000 11945.9 10013.2 8947.4 1245.27 11441.8 9557.8 12102.8 11390.6 10321.6 6328.2 FALSE FALSE TRUE 11108.5541 9219.717565 12412.0729 2899.051492 10006.66275 8378.655813 9074.55143 8797.209035 11216.2846 4743.57753 2.341809326 1.943621139 2.616605889 0.611152969 2.10951812 1.766315773 1.91301847 1.854551544 2.364520138 1 12.21175981 NQTAEK(ac)EEFEHQQK ddPTM_HeLa_A485_30min_R1 1 NQTAEKEEFEHQQK 14 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 NQTAEK(1)EEFEHQQK 112.34 0.00056734 13832000 11563 10718 8336 10280 19994 5862.6 18766 14702 8981 38972 FALSE TRUE FALSE 14135.14946 11971.37687 11419.83329 10841.57037 18003.32716 6169.556671 14756.4908 11096.31145 10783.40432 29256.99763 0.48313739 0.409179951 0.390328271 0.370563327 0.615351151 0.210874566 0.504374748 0.37927034 0.368575219 1 14.83649411 -10.36608983 3.37893779 1.004196908 0.41396786 0.754230992 0.100244733 147088519.6 206288693.3 6108962.279 0.02302507 4.30E-11 10.36608983 -0.590229048 NQTAEK(ac)EEFEHQQK ddPTM_HeLa_A486_30min_R1 2 NQTAEKEEFEHQQK 14 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 ; NQTAEK(1)EEFEHQQK;NQTAEK(1)EEFEHQQK 192.32 1.09E-11 20275700 16641.9 19993.2 15073.9 9163.1 16760.4 23661.9 35583 27451 16602.4 47651 FALSE TRUE FALSE 15475.38875 18408.86602 20910.91777 21332.15988 14658.15435 20742.73535 26679.75704 21201.00655 18041.5094 35718.87944 0.433255158 0.515381958 0.585430397 0.597223659 0.410375537 0.580721895 0.746937123 0.593551838 0.505097295 1 15.1243992 -14 0.209829215 3.109658621 0.494195924 0.707386919 0.087566556 84.6984428 0.844271711 75.22503434 0.198153615 1.00E-14 14 -2.615462697 NQTAEKEEFEHQQK ddPTM_HeLa_A485_30min_R1 1 NQTAEKEEFEHQQK 14 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 169.4 7.26E-08 26293000 34824 22803 14350 68359 37658 25315 50423 33362 21587 95155 FALSE FALSE TRUE 42570.47866 25469.61249 19658.66215 72093.27908 33908.63729 26640.45426 39649.71413 25179.91719 25919.31289 71434.6097 0.595936323 0.356544434 0.275198006 1.009220592 0.474680795 0.372934833 0.555049076 0.352489043 0.362839708 1 16.1243356 -11.06449031 3.006804199 1.806197543 0.484141035 0.376116658 0.199417987 19779492.87 39051284.06 107885122.1 0.050637305 8.62E-12 11.06449031 -1.322056508 NQTYSFS(ph)PSK ddPTM_HeLa_A485_30min_R1 3 NQTYSFSPSK 10 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NQTYS(0.007)FS(0.991)PS(0.002)K;NQTYS(0.004)FS(0.993)PS(0.004)K;NQTYS(0.003)FS(0.885)PS(0.112)K ;; 160.48 6.05E-07 1203340000 1398070 1183240 803655 3004460 1847540 1167880 2231250 1747810 1124190 4205340 TRUE FALSE FALSE 1709065.848 1321609.625 1100960.427 3168586.042 1663592.43 1229028.391 1754525.21 1319156.857 1349804.621 3157026.132 0.541353089 0.418624861 0.348733391 1.003661646 0.526949211 0.389299404 0.555752514 0.417847937 0.427555733 1 21.59013477 -11.20762501 2.334897481 2.477566726 0.516182421 0.405457889 0.17638923 25030405.87 4424166.047 195716112.3 0.045158034 6.20E-12 11.20762501 -1.961384304 NQTYSFS(ph)PSK ddPTM_HeLa_A486_30min_R1 4 NQTYSFSPSK 10 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NQTYSFS(1)PSK;NQTYSFS(0.997)PS(0.003)K;NQT(0.005)YS(0.013)FS(0.971)PS(0.011)K;NQT(0.044)YS(0.037)FS(0.778)PS(0.141)K ;;; 177.12 4.58E-08 1798030000 1939510 1624010 668020 986727 1477660 2029590 2701960 2355130 1522000 3332430 TRUE FALSE FALSE 1803560.365 1495317.533 926695.2342 2297150.322 1292318.104 1779199.821 2025901.03 1818918.311 1653928.185 2497967.838 0.722011043 0.598613605 0.37097965 0.919607646 0.517347776 0.712258899 0.811019661 0.72815922 0.66210948 1 21.25232347 -14 0.133696305 2.138769188 0.537488689 0.350710887 0.140755266 156.1110677 1.301075396 47.26945369 0.972403512 1.00E-14 14 -1.601280498 NQVEEDAEDS(ph)GEADDEEKPEIHKPGQNSFSK ddPTM_HeLa_A485_30min_R1 2 NQVEEDAEDSGEADDEEKPEIHKPGQNSFSK 31 2 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK;NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK ; 234.02 1.52E-50 2949020000 435390 239255 137424 845230 475760 340748 757290 555630 286625 1278280 TRUE FALSE FALSE 532241.0034 267233.791 188262.8563 891402.7747 428391.6639 358589.0384 595488.805 419360.8713 344148.0084 959628.321 0.554632447 0.278476349 0.196183097 0.928904197 0.446414153 0.373674922 0.620541091 0.437003434 0.358626357 1 19.87211621 -11.11619182 2.401515928 2.014301537 0.466604864 0.406088719 0.193717686 36085391.15 9490600.381 199810752.5 0.048925699 7.65E-12 11.11619182 -1.547696674 NQVEEDAEDS(ph)GEADDEEKPEIHKPGQNSFSK ddPTM_HeLa_A486_30min_R1 5 NQVEEDAEDSGEADDEEKPEIHKPGQNSFSK 31 2 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK;NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK;NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK;NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK;NQVEEDAEDS(1)GEADDEEKPEIHKPGQNSFSK ;;;; 341.67 1.66E-128 5527020000 1848880 1481120 437216 472334 1171579 2202420 3272040 2690390 1343570 3093500 TRUE FALSE FALSE 1719283.06 1363750.657 606517.7443 1099617.422 1024628.637 1930707.813 2453340.984 2077846.928 1460031.729 2318867.465 0.741432223 0.588110652 0.261557745 0.474204515 0.441865977 0.832608091 1.057991033 0.896061099 0.629631383 1 21.14498893 -6.321180274 5.149536944 0.89280151 0.491317959 0.606413498 0.154009113 0.154604122 8.604516735 0.057599617 0.051066285 4.77E-07 6.321180274 -0.401483551 NQVIIPLVLS(ph)PDRDEDLMR ddPTM_HeLa_A485_30min_R1 5 NQVIIPLVLSPDRDEDLMR 19 1 Q96G25;Q96G25-2 Q96G25 MED8 Mediator of RNA polymerase II transcription subunit 8 1 0 NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR ;;;; 147.93 8.97E-09 208018000 123655 146372 130601 141099 215111 131222 206257 195231 121448 220094 TRUE FALSE FALSE 151161.6281 163488.9321 178915.7447 148806.8811 193693.7935 138092.581 162188.507 147350.2911 145821.4996 165228.6163 0.914863487 0.989471048 1.082837517 0.900612039 1.172277526 0.835766734 0.981600588 0.891796436 0.882543853 1 17.33410405 -6.313205678 24.99975577 0.915532542 1.008506859 0.231133749 0.085224807 518.2795388 250293.5445 0.028380182 0.025029002 4.86E-07 6.313205678 0.092974317 NQVIIPLVLS(ph)PDRDEDLMR ddPTM_HeLa_A486_30min_R1 6 NQVIIPLVLSPDRDEDLMR 19 1 Q96G25;Q96G25-2 Q96G25 MED8 Mediator of RNA polymerase II transcription subunit 8 1 0 NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR ;;;;; 113.24 2.13E-05 295413000 131506.6 122490.7 89373.7 53872.5 135404 119226.7 154245.2 142521.3 106616.4 154021.4 TRUE FALSE FALSE 122288.6664 112784.0908 123981.5902 125417.9026 118420.3677 104517.722 115651.4195 110072.3112 115857.9954 115453.4389 1.059203325 0.976879441 1.073866585 1.086307205 1.025698055 0.905280284 1.001714809 0.95339136 1.003504066 1 16.81695162 -6.016853992 24.342038 0.97098644 1.046970064 0.471825952 0.038475294 462.2025683 667553.8602 0.012441443 0.012752142 9.62E-07 6.016853992 0.075983624 NQYVPYPHAPGS(ph)QR ddPTM_HeLa_A485_30min_R1 1 NQYVPYPHAPGSQR 14 0 Q12965 Q12965 MYO1E Unconventional myosin-Ie 1 0 NQYVPYPHAPGS(1)QR 63.691 0.01524 164680000 48540 61533 50069 58954 78397 64683 98558 113130 62983 95904 TRUE FALSE FALSE 59337.55554 68728.74908 68591.60664 62174.50774 70591.51941 68069.70186 77500.27816 85384.69012 75623.11039 71996.89778 0.824168226 0.95460709 0.952702252 0.863572038 0.980480015 0.945453262 1.076439132 1.185949572 1.050366234 1 16.13564712 -6.734557348 3.26470006 1.09719251 0.919901129 0.611559509 0.061501855 0.152556535 3.36014274 0.025818683 0.018150098 1.84E-07 6.734557348 -0.177291381 NRDS(ph)DKTDTDWR ddPTM_HeLa_A486_30min_R1 2 NRDSDKTDTDWR 12 2 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 NRDS(1)DKTDTDWR;NRDS(1)DKTDTDWR ; 146.3 8.06E-08 601240000 956790 838480 375520 613200 856960 1128200 1545150 1357250 633700 1706100 TRUE FALSE FALSE 889723.9619 772035.7911 520931.4008 1427560.589 749472.086 989014.1547 1158537.127 1048233.804 688629.6262 1278881.455 0.695704796 0.603680496 0.407333611 1.116257166 0.586037183 0.773343104 0.905898762 0.81964892 0.538462438 1 20.28645111 -5.235491647 24.99903852 0.804328016 0.572383755 0.297185712 0.175745085 1022.871101 985472.1124 0.046129366 0.079863904 5.81E-06 5.235491647 -0.231944261 NREEEWDPEYT(ph)PK ddPTM_HeLa_A485_30min_R1 4 NREEEWDPEYTPK 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NREEEWDPEY(0.001)T(0.999)PK;NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK ;;; 149.73 7.62E-08 8095600000 5923910 4620180 3296370 9509600 7024100 5842980 10222000 8906800 4107830 12081000 TRUE FALSE FALSE 7241663.342 5160469.861 4515834.436 10029085.37 6324755.941 6148909.398 8037986.194 6722393.335 4932233.802 9069429.034 0.798469597 0.568996112 0.497918272 1.10581221 0.697370906 0.677981974 0.886272572 0.741214613 0.543830685 1 23.1125803 -11.45363476 2.256648376 3.880258348 0.727328462 0.191593673 0.169843816 11806168.81 480833.4332 176514649.1 0.042779033 3.52E-12 11.45363476 -3.152929886 NREEEWDPEYT(ph)PK ddPTM_HeLa_A486_30min_R1 6 NREEEWDPEYTPK 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NREEEWDPEY(0.001)T(0.999)PK;NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK;NREEEWDPEY(0.001)T(0.999)PK ;;;;; 144.5 1.15E-07 9390730000 8364750 7140230 3260510 5506852 6868360 9001210 12615550 11620780 5867150 15395950 TRUE FALSE FALSE 7778424.221 6574412.171 4523066.791 12820229.76 6006866.244 7890732.228 9459005.956 8974982.074 6375719.286 11540703.91 0.673999115 0.569671679 0.391922956 1.110870694 0.520493922 0.683730584 0.819621232 0.777680646 0.552454975 1 23.46022789 -14 0.146942062 2.062174283 0.583571041 0.203592258 0.188251078 223.7243765 1.969155912 70.22078189 1.003848025 1.00E-14 14 -1.478603241 NRENS(ph)PSSQSAGLSSINK ddPTM_HeLa_A486_30min_R1 1 NRENSPSSQSAGLSSINK 18 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 0 NRENS(0.929)PS(0.056)S(0.014)QSAGLSSINK 86.557 0.00044413 879960000 921280 865120 566170 463010 910810 826190 1083300 1142800 665550 1240400 TRUE FALSE FALSE 856703.0295 796564.7405 785406.1866 1077910.679 796567.7168 724263.0779 812246.882 882609.3871 723240.4099 929795.7664 0.921388396 0.856709365 0.844708284 1.15929833 0.856712566 0.778948565 0.873575587 0.949250813 0.77784868 1 19.82655433 NRENS(ph)PSSQSAGLSSINKEGEEPTKGNSGSEACTSSFLR ddPTM_HeLa_A485_30min_R1 1 NRENSPSSQSAGLSSINKEGEEPTKGNSGSEACTSSFLR 39 3 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 0 NRENS(0.644)PS(0.252)S(0.089)QS(0.014)AGLSSINKEGEEPTKGNSGSEACTSSFLR 47.136 0.028514 293820000 35943 61881 49286 38024 76538 64546 84397 101870 60603 52688 TRUE FALSE FALSE 43938.39635 69117.44466 67518.94236 40101.15484 68917.60798 67925.52875 66364.89149 76886.22277 72765.46622 39553.85125 1.110850017 1.747426419 1.707013103 1.013836923 1.742374151 1.717292415 1.677836403 1.943836576 1.839655657 1 15.27153055 NRENS(ph)SPCQGNGEQAGR ddPTM_HeLa_A486_30min_R1 1 NRENSSPCQGNGEQAGR 17 1 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 NRENS(0.5)S(0.5)PCQGNGEQAGR 139.95 8.80E-07 235870000 83151 71194 56491 55363 82024 72563 95188 105740 57834 119990 TRUE FALSE FALSE 77322.54429 65552.32816 78365.82808 128887.8619 71735.78508 63610.91483 71370.9556 81665.31029 62847.09769 89943.723 0.859676937 0.72881493 0.871276232 1.432983399 0.797562995 0.707230174 0.793506798 0.907960084 0.698738006 1 16.45673498 NRENSS(ph)PCQGNGEQAGR ddPTM_HeLa_A485_30min_R1 2 NRENSSPCQGNGEQAGR 17 1 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 NRENS(0.036)S(0.964)PCQGNGEQAGR;NRENS(0.012)S(0.988)PCQGNGEQAGR ; 233.3 9.26E-36 390090000 92020 129593 116389 109171 164048 115307 172020 186540 99092 155200 TRUE FALSE FALSE 112489.5315 144747.774 159446.1345 115134.7353 147714.8051 121344.2962 135266.5217 140790.7725 118978.8555 116511.4962 0.965480104 1.242347568 1.368501303 0.988183475 1.267813133 1.041479168 1.160971458 1.208385241 1.021176959 1 16.83011279 -7.819107817 7.373534966 1.006741431 1.159868878 0.186424193 0.120755034 0.402818738 41.96753956 0.11107717 0.029046895 1.52E-08 7.819107817 0.153127448 NRENSS(ph)PCQGNGEQAGR ddPTM_HeLa_A486_30min_R1 1 NRENSSPCQGNGEQAGR 17 1 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 NRENS(0.048)S(0.952)PCQGNGEQAGR 170.02 1.97E-12 283380000 17179 13659 13111 9042.5 16247 17715 18465 22132 16184 23020 TRUE FALSE FALSE 15974.84081 12576.61109 18187.93032 21051.39698 14209.14976 15529.50341 13844.8617 17093.02674 17586.84215 17255.64216 0.925774924 0.728840513 1.054028019 1.219971809 0.823449491 0.899966704 0.802338248 0.990576101 1.019193721 1 14.07478054 -1.000139258 0.012070321 1.656748004 0.114145458 0.027517598 0.13315989 50055.10688 46.78791761 2497.95384 3570.091624 0.09996794 1.000139258 -1.542602546 NREPVQLETLSIR ddPTM_HeLa_A485_30min_R1 1 NREPVQLETLSIR 13 1 J3QLI9;P62314 J3QLI9 SNRPD1 Small nuclear ribonucleoprotein Sm D1 0 0 82.483 0.011009 8834700 7115.3 7987.8 7813.5 13482 13783 8670.4 11863 10774 7715.4 19516 FALSE FALSE TRUE 8698.073938 8921.903725 10704.0388 14218.48752 12410.71612 9124.368737 9328.373138 8131.659607 9263.81001 14651.02037 0.593683834 0.608961253 0.730600226 0.97047763 0.847088859 0.622780428 0.636704674 0.555023432 0.632297941 1 13.83871352 -6.287019196 24.10512058 0.658259218 0.753470836 0.018357512 0.152524093 1414.49096 1332938.405 0.055794377 0.049228177 5.16E-07 6.287019196 0.095211618 NRGNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_A485_30min_R1 4 NRGNRGSGGGGGGGGQGSTNYGK 23 2 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 NRGNRGS(0.987)GGGGGGGGQGS(0.013)TNYGK;NRGNRGS(0.961)GGGGGGGGQGS(0.038)T(0.001)NYGK;NRGNRGS(1)GGGGGGGGQGSTNYGK;NRGNRGS(1)GGGGGGGGQGSTNYGK ;;; 145.18 9.05E-10 764389000 371586 617829 348224 298855 724900 583001 1038420 1309360 356020 510677 TRUE FALSE FALSE 454244.0237 690078.7272 477046.5484 315180.6919 652726.4107 613526.0309 816553.0839 988237.407 427469.9484 383374.6222 1.184856789 1.800011496 1.244335229 0.82212195 1.702581164 1.600330317 2.129909067 2.577732979 1.115018897 1 18.54839531 -5.9734412 24.55816323 1.7933072 1.295188817 0.136099618 0.484631146 306.6196871 283520.5942 0.150426763 0.170571824 1.06E-06 5.9734412 -0.498118382 NRGNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_A486_30min_R1 1 NRGNRGSGGGGGGGGQGSTNYGK 23 2 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 NRGNRGS(1)GGGGGGGGQGSTNYGK 119.64 3.84E-05 52826000 23278 13736 8996.9 14913 21283 12127 27088 28108 11632 35808 TRUE FALSE FALSE 21646.33241 12647.50933 12480.74063 34718.21766 18613.48768 10630.89404 20310.29589 21708.42199 12640.27113 26841.44373 0.806451867 0.471193333 0.464980228 1.293455673 0.693460749 0.396062676 0.756676731 0.808765065 0.470923668 1 14.71217465 -11.11728074 2.53358554 1.619696729 0.687367777 0.124477603 0.250797936 21442022.63 6343969.235 76585040.36 0.065032324 7.63E-12 11.11728074 -0.932328952 NRGPS(ph)PEPLK ddPTM_HeLa_A485_30min_R1 4 NRGPSPEPLK 10 1 Q92674-2;Q92674 Q92674-2 CENPI Centromere protein I 1 0 NRGPS(1)PEPLK;NRGPS(1)PEPLK;NRGPS(1)PEPLK;NRGPS(1)PEPLK ;;; 66.989 0.0079871 1798140000 1645040 1470820 1230340 2492910 2186420 1538270 2713010 2418110 1450700 3560750 TRUE FALSE FALSE 2010973.473 1642819.605 1685493.965 2629091.361 1968732.348 1618811.439 2133353.25 1825064.731 1741842.183 2673120.556 0.752294343 0.614569964 0.630534213 0.983528915 0.736492166 0.605588639 0.798075959 0.682746884 0.651613778 1 21.35009347 -11.29347354 2.192237435 2.239995847 0.718172684 0.384661681 0.107271914 5800898.162 773069.2987 35675843.1 0.027488986 5.09E-12 11.29347354 -1.521823164 NRGPS(ph)PEPLK ddPTM_HeLa_A486_30min_R1 3 NRGPSPEPLK 10 1 Q92674-2;Q92674 Q92674-2 CENPI Centromere protein I 1 0 NRGPS(1)PEPLK;NRGPS(1)PEPLK;NRGPS(1)PEPLK ;; 82.34 0.0029883 1267360000 2181360 1889760 932930 880910 1649010 2155000 2867610 2528230 1651500 2997080 TRUE FALSE FALSE 2028457.929 1740008.535 1294185.481 2050802.999 1442175.789 1889138.01 2150103.648 1952607.22 1794653.35 2246591.66 0.902904593 0.774510369 0.576066182 0.912850802 0.641939439 0.84089069 0.957051379 0.869142023 0.798833799 1 21.09930649 -6.515591777 24.06392065 0.895869002 0.758553576 0.28387794 0.107942895 285.8108626 943849.5173 0.039099477 0.031607781 3.05E-07 6.515591777 -0.137315427 NRHS(ph)PDHPGMGSSQASSSSSLR ddPTM_HeLa_A485_30min_R1 15 NRHSPDHPGMGSSQASSSSSLR 22 1 J3KR33;A0JLT2 J3KR33 MED19 Mediator of RNA polymerase II transcription subunit 19 1 0 NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(0.991)PDHPGMGS(0.007)S(0.002)QASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR ;;;;;;;;;;;;;; 344.72 1.50E-116 9526352200 1602219.7 2110720.1 2005536.1 1013173.6 3096923 1888047.6 2459418.6 2397480.5 1923955.1 2011175.6 TRUE FALSE FALSE 1958627.945 2357550.455 2747467.361 1068520.708 2788582.472 1986902.853 1933943.725 1809494.648 2310075.241 1509826.536 1.297253624 1.561471069 1.819723853 0.707710908 1.846955532 1.31598088 1.28090458 1.198478504 1.530026918 1 20.52595138 -12.95178946 0.162578742 8.56E-10 1.506516033 0.125969692 0.311630459 188.7039606 2.385475847 63.66286013 1.287760597 1.12E-13 12.95178946 1.506516032 NRHS(ph)PDHPGMGSSQASSSSSLR ddPTM_HeLa_A486_30min_R1 8 NRHSPDHPGMGSSQASSSSSLR 22 1 J3KR33;A0JLT2 J3KR33 MED19 Mediator of RNA polymerase II transcription subunit 19 1 0 NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(0.998)PDHPGMGS(0.002)SQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(0.674)PDHPGMGS(0.163)S(0.163)QASSSSSLR ;;;;;;; 350.09 1.99E-128 6808090000 2161674.7 2057796.4 1739175 66171.7 2321404.9 1755846.1 2324855.9 2139728.4 2057551.6 1177351.6 TRUE FALSE FALSE 2010152.466 1894729.119 2412630.137 154051.0617 2030232.651 1539227.66 1743152.364 1652558.953 2235901.829 882535.0961 2.277702581 2.146916454 2.733749794 0.174555168 2.300455427 1.74409796 1.975164922 1.872513581 2.533499052 1 19.75129413 NRPDYVS(ph)EEEEDDEDFETAVK ddPTM_HeLa_A485_30min_R1 1 NRPDYVSEEEEDDEDFETAVK 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NRPDYVS(1)EEEEDDEDFETAVK 174.31 2.29E-14 101020000 55839 32162 32322 65342 61407 46791 80402 77057 34413 108710 TRUE FALSE FALSE 68260.19291 35923.06613 44279.25283 68911.46801 55293.10347 49240.90441 63223.45588 58158.64993 41319.37345 81610.59766 0.836413344 0.440176486 0.542567437 0.84439362 0.67752357 0.603364095 0.774696641 0.712636001 0.506299116 1 16.31646889 -10.47986158 3.256114536 1.006872905 0.659104964 0.379519699 0.130500478 39118603.68 52665656.52 2455298.993 0.033590183 3.31E-11 10.47986158 -0.34776794 NRPDYVS(ph)EEEEDDEDFETAVK ddPTM_HeLa_A486_30min_R1 1 NRPDYVSEEEEDDEDFETAVK 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NRPDY(0.001)VS(0.998)EEEEDDEDFET(0.001)AVK 55.67 0.013636 126000000 28153 33828 28040 5239.1 40804 37631 36775 45361 29332 24237 TRUE FALSE FALSE 26179.62008 31147.34608 38897.83894 12196.88957 35685.98184 32988.46982 27573.50603 35033.29052 31874.52138 18167.89744 1.440982379 1.714416661 2.141020394 0.671342934 1.964232898 1.815756057 1.517704848 1.928307369 1.754441948 1 14.14910385 NRPDYVS(ph)EEEEDDEDFETAVKK ddPTM_HeLa_A485_30min_R1 1 NRPDYVSEEEEDDEDFETAVKK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NRPDYVS(1)EEEEDDEDFETAVKK 131.57 7.22E-07 66177000 18567 16878 13387 33828 22929 17128 34852 35883 17991 42206 TRUE FALSE FALSE 22697.16509 18851.73528 18339.40838 35675.93798 20646.10825 18024.7956 27405.58549 27082.63799 21601.62868 31684.82094 0.716341908 0.59497686 0.578807386 1.125963061 0.651608803 0.568877938 0.864943676 0.854751177 0.681765843 1 14.95150424 -13.99999999 0.124758225 1.837184115 0.62463747 0.20015518 0.161908116 259.5848224 2.06991326 54.84470677 1.44482429 1.00E-14 13.99999999 -1.212546645 NRPDYVS(ph)EEEEDDEDFETAVKK ddPTM_HeLa_A486_30min_R1 1 NRPDYVSEEEEDDEDFETAVKK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NRPDYVS(1)EEEEDDEDFETAVKK 201.08 3.75E-27 162540000 47591 30790 16884 23565 37421 49086 74886 58375 25920 78260 TRUE FALSE FALSE 44255.11666 28350.08826 23421.93697 54860.51091 32727.30924 43030.26839 56148.73074 45084.28682 28166.76647 58663.18661 0.754393329 0.483268808 0.399261246 0.935177819 0.557884955 0.733513995 0.957137414 0.76852775 0.480143819 1 15.84016782 -5.256443753 24.99928106 0.763092557 0.539403903 0.258876419 0.177617023 603.7472062 3021282.659 0.048226256 0.080288979 5.54E-06 5.256443753 -0.223688654 NRPEDYQGGR ddPTM_HeLa_A485_30min_R1 3 NRPEDYQGGR 10 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 0 ;; ;; 183.03 1.73E-09 233993000 123818 162389 144263 160966 199264 142444 204104 208456 124153 223721 FALSE FALSE TRUE 151360.8869 181378.981 197631.887 169759.165 179424.5765 149902.1476 160495.513 157331.8392 149069.3683 167951.472 0.901217984 1.079948742 1.176720184 1.010763186 1.068312021 0.892532502 0.955606469 0.936769635 0.887574051 1 17.35768491 -6.254085489 24.82158245 0.931864004 1.054351031 0.387570833 0.070649024 526.7844589 1778056.696 0.02376465 0.023300767 5.57E-07 6.254085489 0.122487027 NRPEDYQGGR ddPTM_HeLa_A486_30min_R1 4 NRPEDYQGGR 10 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 0 ;;; ;;; 203.94 9.26E-14 395414000 259338 239679 171813 102741 286986 252861 289802 288557 214214 323852 FALSE FALSE TRUE 241159.7454 220685.9631 238343.5949 239186.2402 250989.5398 221665.5807 217290.4744 222858.8703 232782.242 242757.3513 0.993418919 0.909080454 0.981818238 0.98528938 1.033911181 0.913115832 0.895093282 0.918031397 0.958909136 1 17.88915546 -6.305362378 24.99998405 0.929285845 0.977041335 0.219542335 0.039556586 670.4855209 381623.1828 0.014159321 0.012487437 4.95E-07 6.305362378 0.04775549 NRPEPHSDENGST(ph)TPK ddPTM_HeLa_A485_30min_R1 1 NRPEPHSDENGSTTPK 16 1 Q03701;C9J9W7 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 NRPEPHSDENGS(0.003)T(0.596)T(0.402)PK 78.932 0.0051583 150870000 49539 48328 34618 82113 78718 50077 87137 76566 48969 119750 TRUE FALSE FALSE 60558.77964 53979.5392 47424.63878 86598.62527 70880.55952 52698.95429 68519.46811 57788.06845 58796.62913 89898.52884 0.673634824 0.600449639 0.527535204 0.963293019 0.788450717 0.586204858 0.762186756 0.642814395 0.654033274 1 16.45600989 -11.27557362 2.176363432 2.232821041 0.690198307 0.386171159 0.117716968 8280245.359 1218449.103 50207677.18 0.030791769 5.30E-12 11.27557362 -1.542622733 NRPEPHSDENGSTT(ph)PK ddPTM_HeLa_A486_30min_R1 2 NRPEPHSDENGSTTPK 16 1 Q03701;C9J9W7 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 NRPEPHSDENGS(0.003)T(0.207)T(0.79)PK;NRPEPHSDENGST(0.025)T(0.975)PK ; 109.66 0.00022829 279820000 164739 120638 75373 78628 133042 167047 232201 210905 118494 273940 TRUE FALSE FALSE 153191.6468 111078.2055 104559.4442 183049.9576 116354.6318 146438.4395 174101.8538 162886.5355 128765.1553 205343.6409 0.746025765 0.540938132 0.509192511 0.891432317 0.566633723 0.713138419 0.847856077 0.793238762 0.627071551 1 17.64768075 -14 0.111053372 1.989791869 0.519692183 0.381891899 0.12148184 171.5880501 1.261563368 38.53074095 1.487526756 1.00E-14 14 -1.470099686 NRPLLDFVSMEELNDMDDYDS(ph)EDDNDWRPTVVK ddPTM_HeLa_A485_30min_R1 1 NRPLLDFVSMEELNDMDDYDSEDDNDWRPTVVK 33 2 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 NRPLLDFVSMEELNDMDDY(0.018)DS(0.982)EDDNDWRPTVVK 88.987 8.84E-05 43025000 5337 4776.3 4411.7 7121.2 9831.4 4628.5 9393.9 8746.7 5998.7 9118.7 TRUE FALSE FALSE 6524.197238 5334.846737 6043.771416 7510.213124 8852.551296 4870.841103 7386.816524 6601.558111 7202.584067 6845.575907 0.953053085 0.779313064 0.882872602 1.097090037 1.293178458 0.711531238 1.079064293 0.964353942 1.052151662 1 12.7409562 -5.154104487 6.181959967 1.026327261 0.858737835 0.205116104 0.140954304 0.371307922 18.31869287 0.038483203 0.067554332 7.01E-06 5.154104487 -0.167589426 NRPLLDFVSMEELNDMDDYDS(ph)EDDNDWRPTVVK ddPTM_HeLa_A486_30min_R1 3 NRPLLDFVSMEELNDMDDYDSEDDNDWRPTVVK 33 2 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 NRPLLDFVSMEELNDMDDYDS(1)EDDNDWRPTVVK;NRPLLDFVSMEELNDMDDYDS(1)EDDNDWRPTVVK;NRPLLDFVSMEELNDMDDY(0.006)DS(0.994)EDDNDWRPTVVK ;; 224.79 1.53E-39 131556000 49164 41491 27086.6 27198.3 47723 52337 68091 59415 45355 70558 TRUE FALSE FALSE 45717.85748 38203.10205 37575.25692 63319.01693 41737.13634 45880.19306 51053.91161 45887.50152 49286.40792 52889.81754 0.864398094 0.722314877 0.710444064 1.197187282 0.78913368 0.86746741 0.965288102 0.867605593 0.931869502 1 15.69070238 NRPS(ph)VPPPPQPPGVHSAGDSSLTNTAPTASK ddPTM_HeLa_A486_30min_R1 2 NRPSVPPPPQPPGVHSAGDSSLTNTAPTASK 31 1 Q68EM7-2;I3L460;I3L3P1;I3L4Y5;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 NRPS(0.691)VPPPPQPPGVHS(0.121)AGDS(0.117)S(0.022)LT(0.024)NT(0.026)APTASK;NRPS(0.917)VPPPPQPPGVHS(0.037)AGDS(0.046)S(0.001)LTNTAPTASK ; 80.011 0.00053986 304310000 191668 193424 98521 44134 196218 200515 286690 233930 141314 204225 TRUE FALSE FALSE 178233.063 178096.3778 136670.9697 102746.1824 171606.5088 175777.498 214957.1297 180669.2457 153563.2113 153085.7307 1.164269603 1.163376736 0.892774062 0.6711676 1.120983046 1.148229147 1.404161764 1.180183449 1.00311904 1 17.22398029 -5.980491704 24.99960827 1.170035512 0.97019158 0.192092497 0.168095919 383.608969 491587.0805 0.056199711 0.063717101 1.05E-06 5.980491704 -0.199843932 NRPT(ph)SISWDGLDSGK ddPTM_HeLa_A485_30min_R1 2 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 NRPT(0.631)S(0.365)IS(0.004)WDGLDSGK;NRPT(0.774)S(0.148)IS(0.077)WDGLDS(0.001)GK ; 114.53 0.0001966 1225100000 2039480 1452540 1202517 3247680 2625480 1741700 3389420 2652210 1545150 4439360 TRUE FALSE FALSE 2493155.29 1622401.918 1647378.079 3425092.535 2364077.993 1832892.719 2665242.728 2001751.339 1855247.432 3332709.252 0.748086647 0.486811718 0.49430597 1.027720175 0.709356206 0.549970784 0.799722546 0.600637856 0.556678453 1 21.66826403 -10.73515162 2.846093959 1.059156742 0.664364597 0.290517947 0.157661342 81654207.31 69629908.53 34168895.55 0.041767378 1.84E-11 10.73515162 -0.394792144 NRPT(ph)SISWDGLDSGK ddPTM_HeLa_A486_30min_R1 1 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 NRPT(0.83)S(0.163)IS(0.007)WDGLDSGK 107.5 0.00062413 351460000 281290 298310 162450 183020 318240 378430 532800 460140 279390 524330 TRUE FALSE FALSE 261573.0236 274670.8292 225354.9906 426079.8093 278323.3717 331743.1542 399487.8046 355376.1668 303607.7502 393034.3552 0.665522034 0.698846871 0.573372245 1.084077775 0.70814006 0.844056378 1.016419556 0.904186014 0.772471277 1 18.5842959 -5.244112805 24.99915493 0.894202307 0.651207022 0.531550204 0.110800524 681.130903 982749.0702 0.029577679 0.051075917 5.70E-06 5.244112805 -0.242995286 NRPTS(ph)ISWDGLDSGK ddPTM_HeLa_A485_30min_R1 1 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 NRPT(0.106)S(0.888)IS(0.006)WDGLDSGK 109.83 0.00011713 1268200000 1144800 826630 668570 1898700 1431000 951790 1733600 1471300 775170 2480400 TRUE FALSE FALSE 1399456.81 923297.1878 915901.8645 2002421.173 1288524.615 1001624.253 1363202.198 1110461.368 930739.5087 1862081.928 0.751554907 0.495841334 0.491869799 1.075366848 0.691980624 0.537905576 0.732084973 0.596354731 0.499838108 1 20.82848512 NRPTS(ph)ISWDGLDSGK ddPTM_HeLa_A486_30min_R1 3 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 NRPT(0.206)S(0.791)IS(0.002)WDGLDSGK;NRPT(0.005)S(0.883)IS(0.112)WDGLDSGK;NRPT(0.081)S(0.778)IS(0.141)WDGLDSGK ;; 214.63 1.99E-25 1209037000 1326420 1378450 710440 896680 1411690 1899110 2464050 2269640 1296810 2401780 TRUE FALSE FALSE 1233444.808 1269216.602 985541.3942 2087516.356 1234622.677 1664817.117 1847518.628 1752892.518 1409218.535 1800358.655 0.685110605 0.704979865 0.547413923 1.159500275 0.685764846 0.924714146 1.026194766 0.973635177 0.782743222 1 20.77985291 -5.2441075 24.99985643 0.927831938 0.651749298 0.516378448 0.128507184 684.3063749 987056.1021 0.03389554 0.058531469 5.70E-06 5.2441075 -0.27608264 NRS(ph)AEEGELAESK ddPTM_HeLa_A485_30min_R1 2 NRSAEEGELAESK 13 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 NRS(0.992)AEEGELAES(0.008)K;NRS(1)AEEGELAESK ; 191.61 7.20E-18 1502020000 768130 691160 503530 1051460 1016870 801050 1446090 1305220 653950 1434490 TRUE FALSE FALSE 938997.8685 771985.1497 689806.7006 1108898.597 915626.8524 842991.7393 1137121.058 985112.7485 785191.7666 1076898.043 0.871946861 0.716860017 0.640549684 1.029715491 0.850244699 0.782796241 1.055922671 0.914768817 0.72912359 1 20.03845024 -5.255868282 24.99617497 0.90381029 0.740492976 0.316562421 0.111453706 572.9234392 2570562.281 0.030557134 0.051055114 5.55E-06 5.255868282 -0.163317314 NRS(ph)AEEGELAESK ddPTM_HeLa_A486_30min_R1 2 NRSAEEGELAESK 13 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 NRS(1)AEEGELAESK;NRS(1)AEEGELAESK ; 210.69 2.93E-22 1505380000 1476290 1269730 629380 794310 1237950 1598400 2256960 2033840 1078440 2403700 TRUE FALSE FALSE 1372809.695 1169111.971 873092.7914 1849193.822 1082674.768 1401205.659 1692244.736 1570779.03 1171920.048 1801797.875 0.761911041 0.648858558 0.484567555 1.026304808 0.600885806 0.777670836 0.939197876 0.871784262 0.650417044 1 20.78100575 -10.80458191 0.041133567 1.942385143 1.28E-10 0.221121564 0.151933351 583.8432632 3.535669401 113.1438758 59.94178496 1.57E-11 10.80458191 -1.942385143 NRT(ph)PAAVR ddPTM_HeLa_A486_30min_R1 3 NRTPAAVR 8 1 Q92688;Q92688-2 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 NRT(1)PAAVR;NRT(1)PAAVR;NRT(1)PAAVR ;; 109.16 0.0014996 691258000 96685 102565 67131 56388.8 109986 104723 121797 110897 78685 133076 TRUE FALSE FALSE 89907.88078 94437.37586 93125.92103 131275.9761 96190.5303 91803.34101 91322.10236 85648.17396 85505.47915 99752.90342 0.901305904 0.946713054 0.93356602 1.316011581 0.964288026 0.920307458 0.915483151 0.858603319 0.857172836 1 16.60607121 -5.998274087 24.99999625 0.906298991 1.028335491 0.183289643 0.113263518 99.02456032 1434335.311 0.037174124 0.041854592 1.00E-06 5.998274087 0.1220365 NRT(ph)PSDVK ddPTM_HeLa_A485_30min_R1 4 NRTPSDVK 8 1 P39687;H0YN26;H7BZ09;O95626 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D 1 0 NRT(1)PSDVK;NRT(0.997)PS(0.003)DVK;NRT(1)PSDVK;NRT(1)PSDVK ;;; 112.83 0.0013024 2863850000 2109140 1776470 902620 3619360 1521890 1751580 2914150 3123180 1527810 4660220 TRUE FALSE FALSE 2578310.917 1984212.713 1236536.699 3817076.472 1370365.288 1843290.02 2291518.046 2357215.208 1834427.453 3498512.919 0.736973387 0.567158893 0.353446372 1.091056846 0.391699365 0.526878152 0.654997737 0.673776334 0.524344913 1 21.73831039 -10.58058343 2.78885932 1.026163679 0.612353225 0.259892161 0.195727761 44450765.82 44498758.24 8611660.364 0.048402793 2.63E-11 10.58058343 -0.413810454 NRT(ph)PSDVK ddPTM_HeLa_A486_30min_R1 4 NRTPSDVK 8 1 P39687;H0YN26;H7BZ09;O95626 P39687 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D 1 0 NRT(1)PSDVK;NRT(1)PSDVK;NRT(1)PSDVK;NRT(1)PSDVK ;;; 120.86 0.00087229 2352580000 2528290 1130750 1002970 1306400 1102420 3087310 2673870 1943570 2035250 3953280 TRUE FALSE FALSE 2351069.927 1041145.252 1391346.844 3041365.222 964144.2039 2706429.082 2004839.445 1501061.539 2211667.109 2963352.956 0.793381673 0.351340278 0.469517761 1.026325674 0.325355845 0.913299604 0.676544264 0.506541597 0.746339414 1 21.49879904 -14 0.204155347 2.673466355 0.583072253 0.195207878 0.220148783 234.3585729 2.327046092 160.221255 0.490511728 1.00E-14 14 -2.090394102 NRVIQPMGMS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NRVIQPMGMSPR 12 1 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 H0YE35 RIC8A Synembryn-A 1 0 NRVIQPMGMS(1)PR 42.809 0.030108 433850000 137350 314230 270860 156370 434210 318420 463450 445080 201780 268930 TRUE FALSE FALSE 127722.4743 289329.2704 375744.2459 364037.2625 379747.333 279136.5779 347489.9081 343745 219270.4529 201588.1776 0.633581174 1.435249199 1.863920049 1.80584629 1.883777797 1.384687243 1.723761345 1.705184323 1.087714843 1 17.62105151 -7.818476397 6.415106822 1.02355741 1.579913911 0.25306657 0.349023583 0.300891587 24.49976518 0.341789094 0.090090857 1.52E-08 7.818476397 0.556356501 NRVPS(ph)AGDVEK ddPTM_HeLa_A485_30min_R1 3 NRVPSAGDVEK 11 1 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 1 0 NRVPS(1)AGDVEK;NRVPS(1)AGDVEK;NRVPS(1)AGDVEK ;; 137.73 7.32E-06 2032100000 2356750 2167860 1509220 3352400 3160760 2159810 4103100 3642800 1761900 4682200 TRUE FALSE FALSE 2881000.907 2421372.369 2067543.282 3535533.123 2846063.636 2272894.312 3226439.166 2749397.588 2115497.169 3515013.71 0.819627218 0.688865697 0.588203476 1.005837648 0.809687777 0.646624594 0.917902299 0.782186875 0.601846065 1 21.74509889 -10.74990741 2.703531092 1.049416887 0.765342744 0.235975518 0.128203532 65868543.36 52865590.9 21783994.83 0.032506634 1.78E-11 10.74990741 -0.284074143 NRVPS(ph)AGDVEK ddPTM_HeLa_A486_30min_R1 3 NRVPSAGDVEK 11 1 Q15785 Q15785 TOMM34 Mitochondrial import receptor subunit TOM34 1 0 NRVPS(1)AGDVEK;NRVPS(1)AGDVEK;NRVPS(1)AGDVEK ;; 138.68 5.57E-06 2646140000 4693290 3765860 1899260 2481980 3747840 4749360 6871300 5992610 3287140 7230300 TRUE FALSE FALSE 4364314.607 3467439.539 2634704.336 5778174.872 3277750.96 4163432.251 5152028.063 4628223.521 3572071.942 5419785.819 0.805255918 0.639774274 0.486127021 1.066126055 0.604774998 0.768191288 0.950596248 0.853949524 0.659079909 1 22.36980441 -13.9999998 0.058501268 1.871602865 0.381501955 0.176446276 0.161537897 716.4096213 3.060976747 90.94804368 15.80885865 1.00E-14 13.9999998 -1.49010091 NS(ph)DMHLLDLESMGK ddPTM_HeLa_A485_30min_R1 1 NSDMHLLDLESMGK 14 0 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 NS(1)DMHLLDLESMGK 174.04 1.04E-10 0 123240 100780 69269 168920 157740 87860 188690 161070 83899 224830 TRUE FALSE FALSE 150654.3128 112565.3443 94894.48562 178147.6719 142034.8517 92460.21374 148374.84 121567.33 100736.7597 168784.0187 0.89258636 0.666919447 0.562224353 1.055477131 0.841518367 0.547801945 0.879081095 0.720253795 0.596838258 1 17.36481878 NS(ph)DMHLLDLESMGK ddPTM_HeLa_A486_30min_R1 2 NSDMHLLDLESMGK 14 0 Q9Y3P9;Q9Y3P9-2;Q9Y3P9-3 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 NS(1)DMHLLDLESMGK;NS(1)DMHLLDLESMGK ; 123.55 2.35E-05 125552000 149387 144447 74792 92061 132588 170296 218970 198517 97511 205429 TRUE FALSE FALSE 138915.7427 133000.4937 103753.4654 214322.6605 115957.5767 149286.611 164181.39 153319.0127 105963.332 153988.2413 0.902119159 0.863705518 0.673775248 1.39181186 0.753028775 0.969467602 1.066194331 0.995654028 0.688126126 1 17.23246066 NS(ph)DRS(ph)EDGYHS(ph)DGDYGEHDYRHDISDER ddPTM_HeLa_A486_30min_R1 1 NSDRSEDGYHSDGDYGEHDYRHDISDER 28 2 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 3 0 NS(1)DRS(0.998)EDGY(0.302)HS(0.696)DGDY(0.005)GEHDYRHDISDER 96.027 0.00074965 591440000 156030 128080 113890 65030 154370 132170 175700 160130 126050 217250 TRUE FALSE FALSE 145093.1027 117930.4743 157991.2581 151393.1264 135007.4752 115864.2092 131738.0016 123671.8946 136976.1155 162849.1859 0.890966092 0.724169873 0.970169161 0.929652338 0.829033774 0.71148166 0.808957078 0.759425931 0.841122507 1 17.31317698 -5.98920228 24.31280285 0.80399222 0.874868618 0.053711428 0.092422619 353.3707829 795663.4177 0.028162212 0.031899527 1.03E-06 5.98920228 0.070876398 NS(ph)EEEEEEK ddPTM_HeLa_A485_30min_R1 1 NSEEEEEEK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 NS(1)EEEEEEK 157.33 2.94E-05 837150000 930940 580830 320570 2136000 381440 466030 717960 495750 419510 2040600 TRUE FALSE FALSE 1138024.391 648753.016 439162.183 2252684.271 343462.4943 490430.6102 564561.9808 374166.5352 503701.809 1531915.974 0.742876509 0.423491253 0.286675112 1.470501195 0.224204526 0.320141978 0.368533255 0.244247427 0.328805116 1 20.54690574 NS(ph)EEEEEEK ddPTM_HeLa_A486_30min_R1 2 NSEEEEEEK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 NS(1)EEEEEEK;NS(1)EEEEEEK ; 160.48 1.38E-05 1035110000 866450 468580 249610 433020 303033 1132270 849450 527050 779730 2037790 TRUE FALSE FALSE 805716.3294 431448.0143 346265.6768 1008092.444 265023.7755 992582.0395 636908.6254 407052.2204 847317.6242 1527514.12 0.527468989 0.282451081 0.226685745 0.659956219 0.17350005 0.649802202 0.416957603 0.266480169 0.554703628 1 20.54275429 -8.064811559 7.121806748 0.999993803 0.400995972 0.557109069 0.16109726 0.622561199 67.92109758 0.147406619 0.038163968 8.61E-09 8.064811559 -0.598997831 NS(ph)EEEEEEKKK ddPTM_HeLa_A485_30min_R1 3 NSEEEEEEKKK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 NS(1)EEEEEEKKK;NS(1)EEEEEEKKK;NS(1)EEEEEEKKK ;; 163.41 2.86E-08 5990400000 2797820 1102090 612190 11312100 1422840 1592530 3749200 2481800 1124440 13100600 TRUE FALSE FALSE 3420185.407 1230969.839 838664.5564 11930051.38 1281177.054 1675912.408 2948152.792 1873134.659 1350104.794 9834861.519 0.34776142 0.125163922 0.085274669 1.213037048 0.130268947 0.170405288 0.299765562 0.190458671 0.137277459 1 23.22947331 -10.41412747 2.997493296 1.012204418 0.303312147 0.30671374 0.315717669 56990314.29 69135745.52 5943635.54 0.084610302 3.85E-11 10.41412747 -0.708892272 NS(ph)EEEEEEKKK ddPTM_HeLa_A486_30min_R1 5 NSEEEEEEKKK 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 NS(1)EEEEEEKKK;NS(1)EEEEEEKKK;NS(1)EEEEEEKKK;NS(1)EEEEEEKKK;NS(1)EEEEEEKKK ;;;; 153.72 1.98E-07 3987450000 2325410 1203620 598500 3613560 983237 4963990 4583100 2876120 1936090 8538000 TRUE FALSE FALSE 2162410.767 1108240.768 830255.2284 8412550.299 859910.2471 4351583.384 3436359.905 2221290.261 2103911.84 6400029.227 0.337875139 0.173161829 0.129726787 1.314454982 0.134360363 0.679931799 0.536928783 0.347075018 0.328734724 1 22.60964706 -11.4887355 2.171918808 7.349415851 0.448893755 0.199037837 0.335303193 16603976.21 878837.8308 521223767.4 0.082733997 3.25E-12 11.4887355 -6.900522096 NS(ph)GIWESPELDR ddPTM_HeLa_A485_30min_R1 1 NSGIWESPELDR 12 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 NS(1)GIWESPELDR 111.43 0.00048968 0 36536 34039 27618 49118 50673 26565 38719 34895 28448 59112 TRUE FALSE FALSE 44663.30715 38019.56495 37835.04748 51801.19197 45627.8182 27955.90232 30446.36934 26336.94654 34157.25266 44376.46628 1.006463806 0.856750619 0.852592616 1.167312234 1.028198548 0.629971349 0.686092695 0.593489044 0.769715471 1 15.43750717 -6.257897358 24.99859978 0.70733671 0.97836717 0.452677303 0.133612715 268.9230646 1897988.054 0.045160016 0.043458718 5.52E-07 6.257897358 0.27103046 NS(ph)GIWESPELDR ddPTM_HeLa_A486_30min_R1 2 NSGIWESPELDR 12 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 NS(0.996)GIWES(0.004)PELDR;NS(0.721)GIWES(0.279)PELDR ; 216.07 1.39E-22 113910000 109355 139049 91668 53813 122387 132006 148963 138783 117876 158926 TRUE FALSE FALSE 101689.7792 128030.2508 127164.3046 125279.3836 107036.0812 115720.4419 111690.8818 107185.1405 128093.5866 119129.8952 0.853604203 1.074711353 1.067442428 1.051620027 0.898482124 0.971380372 0.937555445 0.899733357 1.075243006 1 16.86217597 -5.744682117 24.98343299 0.957792589 1.020306268 0.081480783 0.075505441 502.7859383 749601.3088 0.021939266 0.028247162 1.80E-06 5.744682117 0.062513679 NS(ph)KSPEEHLEEMMK ddPTM_HeLa_A485_30min_R1 2 NSKSPEEHLEEMMK 14 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 NS(0.5)KS(0.5)PEEHLEEMMK;NS(0.5)KS(0.5)PEEHLEEMMK ; 205.78 3.26E-22 314190000 297180 239490 190315 459590 457020 236605 461390 479510 216202 815340 TRUE FALSE FALSE 363286.6657 267496.2722 260720.4382 484696.238 411517.4841 248993.2719 362810.2573 361909.4207 259591.7583 612090.7432 0.59351766 0.437020614 0.425950631 0.791869904 0.672314503 0.406791435 0.59273933 0.591267593 0.424106656 1 19.22338602 -9.981760506 4.257870273 1.000020036 0.550726147 0.561298881 0.119758693 76290728.69 170218882.7 23770.35703 0.031833144 1.04E-10 9.981760506 -0.449293889 NS(ph)KSPEEHLEEMMK ddPTM_HeLa_A486_30min_R1 1 NSKSPEEHLEEMMK 14 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 NS(0.604)KS(0.396)PEEHLEEMMK 142.78 6.03E-08 122760000 200070 152900 86306 93887 160720 194570 287230 246540 121760 307650 TRUE FALSE FALSE 186046.1262 140783.6471 119725.9946 218573.6808 140560.9989 170565.9316 215362.016 190408.2239 132314.2548 230612.4375 0.806748015 0.610477252 0.519165383 0.947796585 0.609511787 0.739621564 0.933869909 0.82566329 0.573751599 1 17.8151108 -6.018607319 0.867635452 0.816297598 0.66967871 0.117530388 0.153669247 1.402856555 2.321907098 0.088218519 0.107004348 9.58E-07 6.018607319 -0.146618887 NS(ph)KSPTEYHEPVYANPFYRPTTPQR ddPTM_HeLa_A485_30min_R1 1 NSKSPTEYHEPVYANPFYRPTTPQR 25 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 NS(0.662)KS(0.329)PT(0.009)EYHEPVYANPFYRPTTPQR 149.07 1.38E-09 963860000 175050 187630 139340 301940 316430 218560 390400 387580 205640 467200 TRUE FALSE FALSE 213989.2686 209571.6963 190887.6644 318434.2176 284925.1181 230003.4636 306987.8507 292525.3973 246910.0618 350735.6382 0.610115555 0.597520393 0.544249411 0.907903797 0.81236432 0.655774431 0.875268485 0.834033858 0.703977683 1 18.4200245 -2.895583209 0.139994414 1.012840587 1.47E-19 0.493385914 0.103158406 40.73108027 0.630507095 0.549221997 7.700814724 0.001271794 2.895583209 -1.012840587 NS(ph)LESISSIDR ddPTM_HeLa_A486_30min_R1 2 NSLESISSIDR 11 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 NS(0.998)LES(0.002)ISSIDR;NS(0.668)LES(0.326)IS(0.006)SIDR ; 136.92 1.81E-05 321420000 213240 203007 146908 70634 194481 246530 208260 195402 242140 281100 TRUE FALSE FALSE 198292.9772 186919.986 203794.7119 164439.5216 170087.3795 216115.6351 156151.1453 150913.2302 263128.8902 210710.7303 0.941067296 0.887092867 0.967177664 0.780404118 0.807207963 1.025650828 0.741068787 0.716210465 1.248768346 1 17.68490426 -7.764023598 24.99999998 1.124384173 0.860208073 0.483322008 0.110056789 58.8053116 568832.5733 0.090654248 0.027575544 1.72E-08 7.764023598 -0.2641761 NS(ph)NPVIAELSQAINSGTLLSKPS(ph)PPLPPKR ddPTM_HeLa_A485_30min_R1 2 NSNPVIAELSQAINSGTLLSKPSPPLPPKR 30 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 NS(1)NPVIAELSQAINS(0.001)GT(0.001)LLS(0.01)KPS(0.988)PPLPPKR;NS(1)NPVIAELSQAINSGTLLS(0.01)KPS(0.99)PPLPPKR ; 264.36 8.02E-64 132067000 53084 27150 21804.9 104590 54413 34962 66699 39344 37658.2 154417 TRUE FALSE FALSE 64892.35266 30324.95633 29871.43989 110303.4869 48995.45066 36792.55626 52448.21377 29694.82231 45215.85532 115923.6837 0.559785115 0.26159414 0.257681941 0.951518131 0.422652637 0.317386017 0.452437432 0.256158374 0.390048469 1 16.82281582 -10.24717158 3.351972549 1.001658204 0.427271043 0.427262293 0.197989584 72219393.45 106461086.4 1272918.468 0.051763034 5.66E-11 10.24717158 -0.574387161 NS(ph)NPVIAELSQAINSGTLLSKPS(ph)PPLPPKR ddPTM_HeLa_A486_30min_R1 2 NSNPVIAELSQAINSGTLLSKPSPPLPPKR 30 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 NS(1)NPVIAELSQAINSGTLLS(0.042)KPS(0.958)PPLPPKR;NS(1)NPVIAELSQAINSGTLLSKPS(1)PPLPPKR ; 254.49 2.00E-63 220240000 96259 99522 34716.7 64910 70712 119191 152696 127542 85846 164730 TRUE FALSE FALSE 89511.74118 91635.51427 48159.93599 151113.7604 61842.6416 104486.4263 114489.8457 98503.47082 93287.2004 123480.5358 0.724905675 0.742104929 0.390020465 1.223786076 0.500829068 0.846177299 0.927189415 0.797724679 0.755481014 1 16.91392412 -8.986247008 0.041133906 1.790528022 2.16E-10 0.126841357 0.21011711 393.1094055 5.001601544 124.337515 92.76126493 1.03E-09 8.986247008 -1.790528022 NS(ph)NPVIAELSQAINSGTLLSKPSPPLPPKR ddPTM_HeLa_A486_30min_R1 1 NSNPVIAELSQAINSGTLLSKPSPPLPPKR 30 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 NS(1)NPVIAELSQAINSGTLLSKPSPPLPPKR 85.982 0.00039941 15591000 7149.1 8056.2 5479.2 6359.9 6974.4 11903 12435 11463 9483.9 12926 TRUE FALSE FALSE 6647.985008 7417.797372 7600.892978 14806.16861 6099.605718 10434.52888 9323.631476 8853.125136 10305.97209 9689.245466 0.686119991 0.765570178 0.784466964 1.528103366 0.629523294 1.076918623 0.962266 0.913706353 1.063650635 1 13.24216861 -5.027964873 24.9901622 1.01605728 0.738138159 0.275751455 0.208483669 885.4913511 791298.9119 0.054148061 0.094072543 9.38E-06 5.027964873 -0.277919121 NS(ph)PATLFEVPDTW ddPTM_HeLa_A486_30min_R1 2 NSPATLFEVPDTW 13 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 NS(0.5)PAT(0.5)LFEVPDTW;NS(0.845)PAT(0.155)LFEVPDTW ; 91.584 0.0014952 29937000 52576 57317 30823 21553.7 41476 56178 60907 49421 46424 70782 TRUE FALSE FALSE 48890.6939 52774.99218 42758.49107 50178.10286 36273.69333 49247.32954 45667.42439 38168.91715 50448.0697 53057.72649 0.921462285 0.994671194 0.805886228 0.945726592 0.683664675 0.928183938 0.860712047 0.719384709 0.950814764 1 15.69527524 -4.758762411 24.99662307 0.850742528 0.958066752 0.124646117 0.098626845 115.4767246 1078221.923 0.023752516 0.057240513 1.74E-05 4.758762411 0.107324224 NS(ph)PEDLGLSLTGDSCK ddPTM_HeLa_A485_30min_R1 7 NSPEDLGLSLTGDSCK 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK ;;;;;; 419.64 1.64E-171 5937853000 2117584 1466397 1148974 3786677 2336099 1557019 3189135 2167366 1459232 4805640 TRUE FALSE FALSE 2588633.255 1637879.373 1574027.295 3993533.576 2103508.781 1638542.107 2507750.254 1635816.09 1752086.478 3607682.389 0.717533579 0.453997663 0.436298744 1.106952649 0.583063738 0.454181364 0.695113922 0.453425749 0.485654303 1 21.7826409 -10.46802955 3.391388556 1.006305991 0.598285263 0.274211352 0.195975673 104011516.9 122529543 6060447.442 0.051041937 3.40E-11 10.46802955 -0.408020727 NS(ph)PEDLGLSLTGDSCK ddPTM_HeLa_A486_30min_R1 6 NSPEDLGLSLTGDSCK 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK;NS(1)PEDLGLSLTGDSCK ;;;;; 418.58 8.95E-154 6861990000 3873354 3901874 1630107 2429467 3093537 4697330 6251460 5224886 3115456 6748230 TRUE FALSE FALSE 3601851.887 3592675.294 2261328.086 5655921.954 2705516.743 4117821.184 4687278.587 4035293.516 3385506.235 5058429.284 0.712049469 0.71023535 0.447041554 1.118118221 0.534853132 0.814051349 0.926627284 0.797736469 0.669280135 1 22.27025805 -13.99999925 0.060154186 1.846938797 0.388633169 0.165190945 0.177618102 737.7335683 3.234103872 93.54819965 15.49282628 1.00E-14 13.99999925 -1.458305628 NS(ph)PFTR ddPTM_HeLa_A485_30min_R1 4 NSPFTR 6 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 NS(0.999)PFT(0.001)R;NS(0.993)PFT(0.007)R;NS(0.991)PFT(0.009)R;NS(0.997)PFT(0.003)R ;;; 105.94 0.010106 1331120000 1718670 1669870 1559470 2438220 2219640 1475490 2062550 1600190 1556140 3058380 TRUE FALSE FALSE 2100982.212 1865146.771 2136382.848 2571413.785 1998644.848 1552744.375 1621869.343 1207740.893 1868443.024 2295982.151 0.915069053 0.81235247 0.930487568 1.119962445 0.870496683 0.676287651 0.706394578 0.526023642 0.813788131 1 21.13068 -6.122358601 4.673772089 0.713633293 0.940303862 0.320611132 0.133755367 0.241633715 8.16849963 0.044455057 0.044740986 7.54E-07 6.122358601 0.226670568 NS(ph)PFTR ddPTM_HeLa_A486_30min_R1 5 NSPFTR 6 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 NS(0.99)PFT(0.01)R;NS(0.964)PFT(0.036)R;NS(0.929)PFT(0.071)R;NS(1)PFTR;NS(0.963)PFT(0.037)R ;;;; 106.6 0.0099338 1884130000 2581570 2572340 1399740 985770 1963720 2413240 2747040 2487220 2214920 3508010 TRUE FALSE FALSE 2400615.274 2368498.41 1941756.814 2294922.378 1717411.927 2115518.985 2059701.537 1920934.302 2406911.049 2629581.463 0.912926756 0.900713077 0.738428089 0.872732947 0.653112273 0.804507871 0.783281129 0.730509524 0.915320968 1 21.32640176 -9.885668205 5.307509293 1.000000236 0.806408318 0.306571064 0.084214358 2.34E-07 4.92E-08 0.081051275 0.019657798 1.30E-10 9.885668205 -0.193591918 NS(ph)PGLGSLVSPHGPHMPPAASIPPPPGLGGVK ddPTM_HeLa_A485_30min_R1 2 NSPGLGSLVSPHGPHMPPAASIPPPPGLGGVK 32 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 0 NS(0.682)PGLGS(0.134)LVS(0.18)PHGPHMPPAAS(0.004)IPPPPGLGGVK;NS(0.909)PGLGS(0.038)LVS(0.051)PHGPHMPPAAS(0.002)IPPPPGLGGVK ; 134.69 9.88E-07 1178740000 386190 413280 304530 430350 676660 365530 677490 604300 384280 747060 TRUE FALSE FALSE 472096.6332 461609.5009 417188.3196 453858.9308 609289.3545 384668.5856 532738.7269 456094.4775 461401.4712 560831.6906 0.841779523 0.823080273 0.743874368 0.809260494 1.08640322 0.685889532 0.949908388 0.813246621 0.822709342 1 19.09720835 -11.74835175 2.008570759 6.022157216 0.842356411 0.172550932 0.10392666 4021316.522 118009.7191 92754492.57 0.026653991 1.79E-12 11.74835175 -5.179800805 NS(ph)PGLGSLVSPHGPHMPPAASIPPPPGLGGVK ddPTM_HeLa_A486_30min_R1 1 NSPGLGSLVSPHGPHMPPAASIPPPPGLGGVK 32 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 0 NS(0.757)PGLGS(0.203)LVS(0.039)PHGPHMPPAASIPPPPGLGGVK 138.4 4.45E-07 515370000 299310 246810 139560 27672 269620 243440 327530 312490 238370 273590 TRUE FALSE FALSE 278329.9146 227251.8767 193601.3695 64421.81447 235801.7455 213406.8479 245578.5297 241342.8486 259032.1035 205081.2832 1.357168778 1.108106372 0.944022616 0.314128201 1.149796519 1.040596414 1.197469247 1.176815577 1.263070425 1 17.6458363 NS(ph)PGLLVSPGNLNK ddPTM_HeLa_A485_30min_R1 1 NSPGLLVSPGNLNK 14 0 A0A0D9SGF3;D8L7E9;A0A0D9SFD0;A0A0R4J2G5;A0A1B0GV32;A0A0D9SGI5;Q06413-4;Q06413-3;Q06413-6;Q06413-2;Q06413;Q06413-5;A0A0D9SFV9;D6RC63;D6RJG6 A0A0D9SGF3 MEF2C Myocyte-specific enhancer factor 2C 1 0 NS(0.998)PGLLVS(0.002)PGNLNK 77.222 0.006497 183570000 231420 241410 185100 350640 381610 218750 300450 301750 226710 452940 TRUE FALSE FALSE 282898.5806 269640.7995 253576.1927 369794.5753 343615.5685 230203.4117 236256.403 227745.3394 272208.6175 340030.3937 0.831980275 0.792990287 0.745745667 1.087533886 1.010543689 0.677008338 0.694809662 0.66977936 0.800542018 1 18.37530418 -6.274700398 24.96927947 0.743187948 0.890702852 0.176221669 0.129793648 1235.18415 2325731.916 0.047471414 0.042102892 5.31E-07 6.274700398 0.147514904 NS(ph)PGSQVASNPR ddPTM_HeLa_A485_30min_R1 8 NSPGSQVASNPR 12 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 NS(1)PGSQVASNPR;NS(0.999)PGS(0.001)QVASNPR;NS(0.983)PGS(0.017)QVASNPR;NS(0.772)PGS(0.228)QVASNPR;NS(0.995)PGS(0.005)QVASNPR;NS(0.89)PGS(0.109)QVAS(0.001)NPR;NS(0.993)PGS(0.007)QVASNPR;NS(0.982)PGS(0.018)QVASNPR ;;;;;;; 269.55 2.74E-34 6692297000 2484947 2761606 2520646 3810583 4013338 2299843 3665312 3024538 2394019 5037024 TRUE FALSE FALSE 3037714.887 3084551.799 3453137.848 4018745.5 3613755.977 2420259.223 2882188.148 2282765.313 2874476.654 3781386.616 0.80333359 0.815719764 0.913193545 1.06277033 0.955669532 0.64004543 0.762204038 0.603684718 0.760164708 1 21.85048393 -6.25235832 24.81980723 0.729011589 0.913541334 0.287871847 0.120369347 680.6946541 1860434.827 0.040169373 0.039613943 5.59E-07 6.25235832 0.184529745 NS(ph)PGSQVASNPR ddPTM_HeLa_A486_30min_R1 4 NSPGSQVASNPR 12 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 NS(1)PGSQVASNPR;NS(1)PGSQVASNPR;NS(0.997)PGS(0.003)QVASNPR;NS(0.994)PGS(0.006)QVASNPR ;;; 279.71 7.77E-41 7191800000 3297270 2982140 1956860 1302045 2935970 3253980 3998540 3591990 2770940 4236340 TRUE FALSE FALSE 3066148.4 2745824.366 2714608.599 3031226.562 2567713.266 2852537.032 2998063 2774172.29 3011127.31 3175532.89 0.965553974 0.864681444 0.854851356 0.954556815 0.808592874 0.898286093 0.944113352 0.873608426 0.948227405 1 21.59856728 -7.9907943 3.969988166 0.99979973 0.894119509 0.341606867 0.04634388 0.196912779 8.134938881 0.043089408 0.011336048 1.02E-08 7.9907943 -0.105680221 NS(ph)PGVPTGAK ddPTM_HeLa_A485_30min_R1 3 NSPGVPTGAK 10 0 Q08379;R4GND7;B7ZC06 Q08379 GOLGA2 Golgin subfamily A member 2 1 0 NS(1)PGVPTGAK;NS(1)PGVPTGAK;NS(1)PGVPTGAK ;; 109.44 0.00077587 1599460000 2550430 2051610 1514100 4004690 3308910 2096640 3788170 3253520 1933210 5668090 TRUE FALSE FALSE 3117764.355 2291527.943 2074228.597 4223456.074 2979463.302 2206416.828 2978796.533 2455589.119 2321187.515 4255139.476 0.73270556 0.538531805 0.487464303 0.992554086 0.700203441 0.518529849 0.700046743 0.577087809 0.545502099 1 22.02077499 -10.79625662 2.592299294 1.10553234 0.643891032 0.362278519 0.141847407 36098873.12 25376171.61 23996597.91 0.038119712 1.60E-11 10.79625662 -0.461641309 NS(ph)PGVPTGAK ddPTM_HeLa_A486_30min_R1 4 NSPGVPTGAK 10 0 Q08379;R4GND7;B7ZC06 Q08379 GOLGA2 Golgin subfamily A member 2 1 0 NS(0.998)PGVPT(0.002)GAK;NS(0.998)PGVPT(0.002)GAK;NS(1)PGVPTGAK;NS(1)PGVPTGAK ;;; 155.39 2.10E-06 2519020000 6558800 6198400 2800820 3044050 5216300 7107900 9217000 8338200 4633870 10133700 TRUE FALSE FALSE 6099061.99 5707216.21 3885372.513 7086702.238 4562023.014 6230999.566 6910809.113 6439773.882 5035537.583 7596155.561 0.802914309 0.751329559 0.511491962 0.932932742 0.600569983 0.820283302 0.909777197 0.84776751 0.662906064 1 22.85683802 -6.498213838 24.0684463 0.84565575 0.720716142 0.195110512 0.131253601 830.8632526 810772.5268 0.044790969 0.039288951 3.18E-07 6.498213838 -0.124939609 NS(ph)PMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK ddPTM_HeLa_A486_30min_R1 2 NSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK 44 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 NS(0.675)PMAQT(0.325)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK;NS(0.576)PMAQT(0.423)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK ; 133.75 1.29E-08 423650000 493304 379414 171158 305022 432004 557637 913020 805300 316188 905010 TRUE FALSE FALSE 458725.937 349347.8528 237434.9614 710106.631 377818.03 488841.4166 684572.7391 621950.7696 343595.4304 678389.6054 0.676198358 0.5149664 0.349997936 1.046753407 0.556933696 0.720590959 1.009114429 0.916804687 0.506486874 1 19.37175454 -5.252920452 24.99252573 0.811395666 0.513845457 0.356037836 0.189826288 733.8003675 2152792.371 0.051458857 0.087331344 5.59E-06 5.252920452 -0.297550209 NS(ph)PNNISGISNPPGTPR ddPTM_HeLa_A485_30min_R1 1 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 NS(0.998)PNNIS(0.002)GISNPPGTPR 80.312 0.0035044 192740000 40757 41092 46648 67541 54447 41483 58036 41830 43445 104670 TRUE FALSE FALSE 49823.25404 45897.35195 63905.03639 71230.59381 49026.0655 43654.98574 45636.13449 31571.12691 52164.013 78577.69531 0.63406357 0.584101529 0.813271961 0.906498893 0.623918344 0.555564598 0.580777208 0.401782297 0.663852672 1 16.26183223 -10.04668216 5.768602439 1.00000114 0.639923766 0.402944558 0.131307756 2.15E-06 3.55E-07 0.141959823 0.034430206 8.98E-11 10.04668216 -0.360077374 NS(ph)PNNISGISNPPGTPR ddPTM_HeLa_A486_30min_R1 2 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 NS(0.958)PNNIS(0.042)GISNPPGTPR;NS(1)PNNISGISNPPGTPR ; 179.83 1.56E-17 602970000 227660 241290 141663 101699 174145 264310 305630 231130 210710 319810 TRUE FALSE FALSE 211702.2096 222169.3016 196518.7075 236760.4116 152302.1103 231702.1195 229158.1414 178506.7445 228974.5125 239727.4944 0.883095242 0.926757701 0.819758735 0.987623102 0.635313486 0.966522927 0.955910969 0.744623578 0.955144978 1 17.87103586 -7.988170464 24.71641364 1.000000087 0.867202258 0.165644911 0.103481047 258.8615784 540858.6118 0.095168953 0.024572518 1.03E-08 7.988170464 -0.132797829 NS(ph)PPFLK ddPTM_HeLa_A485_30min_R1 4 NSPPFLK 7 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 NS(1)PPFLK;NS(1)PPFLK;NS(1)PPFLK;NS(1)PPFLK ;;; 76.282 0.015855 565919000 1761210 1551900 1147530 3165890 2471560 1479100 2531930 1851600 1457310 4076310 TRUE FALSE FALSE 2152985.088 1733381.205 1572049.1 3338834.554 2225482.808 1556543.389 1990962.472 1397492.197 1749778.75 3060160.936 0.703552896 0.566434655 0.513714518 1.09106502 0.727243715 0.508647559 0.650607113 0.456672778 0.571793048 1 21.5451761 -6.223801835 23.40306193 0.604402555 0.720958206 0.028708612 0.198705228 784.3839751 487729.6257 0.066031435 0.066029007 5.97E-07 6.223801835 0.11655565 NS(ph)PPFLK ddPTM_HeLa_A486_30min_R1 3 NSPPFLK 7 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 NS(1)PPFLK;NS(1)PPFLK;NS(1)PPFLK ;; 101.66 0.0041752 365770000 1807360 1644570 739530 832500 1264330 1726700 2334450 2056450 1433950 2649160 TRUE FALSE FALSE 1680673.397 1514248.284 1025895.821 1938102.072 1105745.942 1513677.31 1750345.919 1588241.227 1558245.941 1985793.093 0.846348697 0.762540815 0.51661768 0.975983892 0.556828376 0.762253286 0.881434186 0.79980197 0.784697029 1 20.92128388 -8.782447453 0.409763632 1.030341512 0.730711784 0.244706742 0.129186392 4.6922177 1.232555482 0.394626393 0.087963192 1.65E-09 8.782447453 -0.299629729 NS(ph)PQALR ddPTM_HeLa_A486_30min_R1 2 NSPQALR 7 0 Q7L7X3-3;Q7L7X3 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 NS(1)PQALR;NS(1)PQALR ; 146.68 0.0011553 1801140000 1892250 2211700 1280960 868060 1625690 2313200 2411400 2070800 2224900 3080300 TRUE FALSE FALSE 1759613.047 2036436.837 1776982.017 2020887.549 1421780.801 2027820.903 1808042.215 1599324.045 2417756.123 2308972.831 0.762076116 0.881966565 0.769598496 0.875232278 0.615763331 0.878235065 0.78305045 0.692656069 1.047113284 1 21.13881977 -7.771953 24.99999208 1.023556834 0.785986042 0.587381058 0.080828227 157.4849136 374465.4613 0.071479278 0.019247116 1.69E-08 7.771953 -0.237570791 NS(ph)PQALRR ddPTM_HeLa_A485_30min_R1 6 NSPQALRR 8 1 Q7L7X3-3;Q7L7X3 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR ;;;;; 125.72 0.00035658 5594660000 1246771 1477735 1214252 1620363 1659398 1261078 2028343 1485144 1095344 2743200 TRUE FALSE FALSE 1524110.908 1650543.254 1663454.344 1708879.328 1494182.509 1327106.094 1594970.948 1120910.105 1315169.494 2059370.725 0.74008574 0.80147942 0.807748855 0.829806556 0.725552952 0.644423113 0.774494329 0.544297387 0.638626877 1 20.97377213 -5.925541798 5.506008642 0.694166463 0.795505063 0.066990786 0.11510712 0.395723988 21.23650903 0.034492364 0.039179279 1.19E-06 5.925541798 0.1013386 NS(ph)PQALRR ddPTM_HeLa_A486_30min_R1 6 NSPQALRR 8 1 Q7L7X3-3;Q7L7X3 Q7L7X3-3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR;NS(1)PQALRR ;;;;; 119.74 0.00046162 4576600000 1610325 1515666 953404 754884 1524511 1591632 2078308 1852763 1465755 2541030 TRUE FALSE FALSE 1497449.533 1395559.106 1322587.562 1757408.102 1333292.615 1395272.626 1558293.356 1430929.31 1592807.824 1904739.549 0.786170232 0.73267713 0.69436662 0.922650083 0.699986839 0.732526726 0.818113614 0.751246705 0.836233922 1 20.86116231 -8.13636685 2.694850348 0.999970691 0.767045749 0.555472662 0.063051012 0.395666554 5.613613533 0.059350279 0.015977029 7.31E-09 8.13636685 -0.232924943 NS(ph)PQPLRR ddPTM_HeLa_A485_30min_R1 1 NSPQPLRR 8 1 Q9UL54-2 Q9UL54-2 1 0 NS(1)PQPLRR 63.408 0.015916 346870000 97862 183170 254630 100050 169320 170120 185630 162730 187140 167010 TRUE FALSE FALSE 119631.0643 204590.1381 348828.233 105515.4782 152461.9063 179027.2201 145968.634 122820.2123 224697.2815 125377.4806 0.954167078 1.631793343 2.78222398 0.841582377 1.216023049 1.427905708 1.164233269 0.979603448 1.792166188 1 16.93591872 NS(ph)PQPLRR ddPTM_HeLa_A486_30min_R1 3 NSPQPLRR 8 1 Q9UL54-2 Q9UL54-2 1 0 NS(1)PQPLRR;NS(1)PQPLRR;NS(1)PQPLRR ;; 67.93 0.01079 981830000 372732 446999 384772 168946 520190 391552 535710 489165 381791 566334 TRUE FALSE FALSE 346605.4116 411577.1713 533766.023 393314.8261 454942.9196 343246.2952 401669.6918 377792.8079 414884.9513 424520.2802 0.81646373 0.969511212 1.257339279 0.92649243 1.071663571 0.808550996 0.946173153 0.889928763 0.977303019 1 18.69547395 -6.239424635 24.97811048 0.918873086 1.015430751 0.112936094 0.116205872 1682.695909 1909201.528 0.038712429 0.038680202 5.76E-07 6.239424635 0.096557666 NS(ph)PQSS(ph)PTSTPK ddPTM_HeLa_A485_30min_R1 1 NSPQSSPTSTPK 12 0 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 2 0 NS(1)PQS(0.132)S(0.689)PT(0.099)S(0.075)T(0.005)PK 134.9 9.68E-05 0 104460 67022 56890 196680 141870 59145 134240 79249 82285 253910 TRUE FALSE FALSE 127696.7666 74859.63989 77935.97839 207424.1304 127744.9247 62241.74074 105558.5274 59813.05849 98798.84474 190614.9099 0.669920137 0.392727095 0.408866119 1.088184185 0.670172783 0.326531334 0.553778964 0.313790031 0.518316457 1 17.54030145 -10.24374019 5.528088127 1.000029916 0.546497408 0.280146501 0.216777766 8.43E-05 1.15E-05 0.221410049 0.053696291 5.71E-11 10.24374019 -0.453532509 NS(ph)PQSS(ph)PTSTPK ddPTM_HeLa_A486_30min_R1 2 NSPQSSPTSTPK 12 0 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 2 0 NS(1)PQS(0.263)S(0.469)PT(0.149)S(0.108)T(0.01)PK;NS(1)PQS(0.007)S(0.922)PT(0.059)S(0.011)T(0.001)PK ; 115.1 0.00058314 250790000 373270 510750 277370 355190 486610 733340 908300 749670 403960 687240 TRUE FALSE FALSE 347105.7006 470276.3099 384775.0922 826900.2703 425574.8363 642867.9669 681033.733 578986.5062 438975.5781 515150.6308 0.673794575 0.912890875 0.746917638 1.605162104 0.826117277 1.247922313 1.322008928 1.123916912 0.852130526 1 18.97463481 NS(ph)PRPS(ph)PKQS(ph)PR ddPTM_HeLa_A485_30min_R1 2 NSPRPSPKQSPR 12 2 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 3 0 NS(1)PRPS(1)PKQS(1)PR;NS(1)PRPS(1)PKQS(1)PR ; 60.034 0.0042805 235070000 288790 262650 204963 640270 549090 303930 670410 602450 275060 933150 TRUE FALSE FALSE 353030.3392 293364.6327 280787.3429 675246.3289 494420.6716 319843.3048 527171.4268 454698.1929 330262.019 700532.8784 0.503945425 0.418773539 0.40081965 0.963903836 0.705777968 0.45657144 0.752529172 0.649074736 0.471443995 1 19.41809324 -14 0.18791493 2.620661174 0.526557394 0.332427421 0.170938861 176.6243042 1.72209515 108.0912947 0.510075463 1.00E-14 14 -2.09410378 NS(ph)PRPS(ph)PKQS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NSPRPSPKQSPR 12 2 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 3 0 NS(1)PRPS(1)PKQS(1)PR 58.997 0.033539 449750000 232970 193100 119430 268380 242440 330990 505340 448110 177690 506730 TRUE FALSE FALSE 216640.0061 177798.0527 165676.4944 624802.2032 212030.9145 290155.8191 378898.5871 346085.1352 193092.3123 379841.5097 0.570343158 0.468084841 0.436172694 1.644902379 0.558208908 0.763886546 0.997517589 0.91113037 0.508349686 1 18.53503805 NS(ph)PSAASTSSNDSK ddPTM_HeLa_A486_30min_R1 1 NSPSAASTSSNDSK 14 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 NS(0.967)PS(0.033)AASTSSNDSK 183.7 2.08E-17 57512000 47170 35972 19514 20063 29823 62790 63363 40917 48959 82485 TRUE FALSE FALSE 43863.62659 33121.44771 27070.3434 46707.67793 26082.32125 55043.6082 47508.90721 31601.09231 53202.80554 61830.21911 0.709420526 0.535683816 0.437817362 0.755418282 0.421837762 0.890237961 0.768376821 0.51109462 0.860466068 1 15.9160245 -6.267356272 24.99772524 0.773124861 0.572747373 0.357870242 0.153590512 639.3427588 2701091.045 0.052298769 0.047334298 5.40E-07 6.267356272 -0.200377489 NS(ph)PVT(ph)KTPPR ddPTM_HeLa_A485_30min_R1 2 NSPVTKTPPR 10 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(1)PVT(0.709)KT(0.291)PPR;NS(1)PVT(0.938)KT(0.062)PPR ; 101.32 0.001297 2324990000 1370520 1136630 744780 2585320 1697840 1013110 2096320 1465060 957880 3469800 TRUE FALSE FALSE 1675387.446 1269548.991 1020305.115 2726549.485 1528797.088 1066154.873 1648424.107 1105751.738 1150117.73 2604842.717 0.643181807 0.487380287 0.391695479 1.04672327 0.586905719 0.409297216 0.632830572 0.424498466 0.441530585 1 21.31276483 -11.20907702 2.260697276 2.295065334 0.563866504 0.337075715 0.183984413 7594032.252 1477846.507 50288600.56 0.047254794 6.18E-12 11.20907702 -1.73119883 NS(ph)PVT(ph)KTPPR ddPTM_HeLa_A486_30min_R1 2 NSPVTKTPPR 10 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(1)PVT(0.629)KT(0.371)PPR;NS(1)PVT(0.5)KT(0.5)PPR ; 97.69 0.0017854 2003920000 1086390 887810 414300 685560 813040 1181600 1621760 1426120 728320 1885210 TRUE FALSE FALSE 1010239.671 817456.7023 574728.0553 1596018.326 711060.9419 1035826.206 1215978.495 1101423.608 791451.364 1413141.145 0.714889432 0.578467837 0.406702513 1.129411829 0.50317758 0.732995574 0.860479152 0.779415143 0.560065331 1 20.43047414 -14 0.139585104 1.96367164 0.597777334 0.171471868 0.19518655 252.1709373 2.156552899 68.62258551 1.20033122 1.00E-14 14 -1.365894307 NS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 7 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(0.946)PVT(0.561)KT(0.478)PPRDLPT(0.014)IPGVTSPSSDEPPMEASQSHLR;NS(0.997)PVT(0.502)KT(0.502)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(1)PVT(0.5)KT(0.5)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.998)PVT(0.5)KT(0.5)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;NS(0.974)PVT(0.564)KT(0.449)PPRDLPT(0.013)IPGVTSPSSDEPPMEASQSHLR;NS(0.903)PVT(0.553)KT(0.495)PPRDLPT(0.045)IPGVT(0.001)S(0.001)PS(0.001)S(0.001)DEPPMEASQSHLR;NS(0.957)PVT(0.495)KT(0.433)PPRDLPT(0.114)IPGVTSPSSDEPPMEASQSHLR ;;;;;; 214.53 1.47E-30 4095390000 473075 574081 350822 565027 902604 595951 1239725 1322776 443905 1092582 TRUE FALSE FALSE 578308.9017 641214.7791 480605.6567 595892.9943 812737.5765 627154.0728 974847.6261 998363.112 532992.6618 820221.4149 0.705064378 0.781758154 0.585946243 0.726502605 0.990875832 0.76461558 1.188517647 1.217187328 0.649815589 1 19.64565389 -5.730473931 5.131969027 0.981083108 0.693842622 0.385194587 0.166064285 0.197645554 13.01376163 0.050976546 0.064195573 1.86E-06 5.730473931 -0.287240486 NS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A486_30min_R1 4 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(0.865)PVT(0.352)KT(0.433)PPRDLPT(0.349)IPGVT(0.001)SPSSDEPPMEASQSHLR;NS(0.997)PVT(0.586)KT(0.416)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.999)PVT(0.581)KT(0.42)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.993)PVT(0.818)KT(0.188)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ;;; 186.91 3.68E-21 2220200000 361197 262980 165016 71074 377959 386287 590576 546317 256379 473266 TRUE FALSE FALSE 335878.9555 242140.507 228914.6145 165463.8639 330551.8579 338630.8374 442807.6383 421932.5451 278602.1381 354757.1132 0.946785683 0.68255293 0.645271387 0.466414507 0.9317695 0.95454277 1.248199464 1.189356124 0.78533207 1 18.43647209 -5.954663902 5.865035081 1.049128008 0.681496187 0.513792951 0.160862218 0.154654851 12.71133992 0.052566378 0.059281965 1.11E-06 5.954663902 -0.367631821 NS(ph)PVTKT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 NSPVTKTPPR 10 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(1)PVT(0.389)KT(0.611)PPR;NS(0.999)PVT(0.059)KT(0.942)PPR ; 95.822 0.0020365 2095640000 1636920 1321410 926330 3083390 2063930 1368580 2582100 1647910 1186020 4211500 TRUE FALSE FALSE 2001047.207 1475937.405 1269018.015 3251827.788 1858437.882 1440236.733 2030413.241 1243757.489 1424043.335 3161650.557 0.632912199 0.466824963 0.401378328 1.028522201 0.587806226 0.45553318 0.642200396 0.393388664 0.450411363 1 21.59224649 -11.04260553 3.121067509 1.593128176 0.563311368 0.352583978 0.178004798 12810463.12 74507260.15 57340376.76 0.045809745 9.07E-12 11.04260553 -1.029816808 NS(ph)PVTKT(ph)PPR ddPTM_HeLa_A486_30min_R1 4 NSPVTKTPPR 10 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(1)PVT(0.292)KT(0.708)PPR;NS(1)PVT(0.399)KT(0.601)PPR;NS(1)PVT(0.061)KT(0.939)PPR;NS(1)PVT(0.185)KT(0.815)PPR ;;; 137.46 2.87E-05 3606090000 3301270 2728740 1313290 2172770 2387230 3713150 5021440 4302490 2371090 6046700 TRUE FALSE FALSE 3069868.021 2512504.704 1821831.059 5058318.366 2087801.353 3255059.306 3765022.601 3322906.95 2576617.99 4532566.963 0.677291267 0.554322688 0.401942448 1.115994183 0.460622285 0.718149193 0.830660116 0.733118115 0.568467716 1 22.1118969 -14 0.158399284 2.139665119 0.591021082 0.201003479 0.193033863 220.5315647 2.016041222 79.71840033 0.833777725 1.00E-14 14 -1.548644036 NS(ph)PVTKT(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 3 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(0.995)PVT(0.216)KT(0.789)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.993)PVT(0.111)KT(0.896)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.998)PVT(0.455)KT(0.545)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR ;; 215.21 3.66E-31 2210090000 337508 376157 246811 450053 725107 400872 834025 760518 329548 811098 TRUE FALSE FALSE 412585.4902 420145.289 338116.6596 474638.2558 652912.8011 421861.0381 655828.7454 573999.7681 395685.2608 608906.1958 0.677584648 0.690000023 0.5552853 0.779493228 1.072271568 0.692817779 1.077060391 0.942673555 0.649829586 1 19.21586047 -5.521995045 24.93605811 0.903103432 0.649449018 0.427139353 0.137660496 29.59305494 835069.0674 0.039103042 0.051135848 3.01E-06 5.521995045 -0.253654415 NS(ph)PVTKT(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A486_30min_R1 2 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(0.999)PVT(0.093)KT(0.908)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;NS(0.991)PVT(0.462)KT(0.54)PPRDLPT(0.005)IPGVT(0.001)SPSSDEPPMEASQSHLR ; 207.62 1.25E-29 1781320000 263055 182286 135143 36377.1 289528 237538 421904 369787 177845 301692 TRUE FALSE FALSE 244616.2029 167840.9935 187473.9889 84687.7272 253212.6985 208232.9767 316339.1568 285594.5725 193260.7478 226146.3595 1.081672079 0.742178622 0.828994061 0.374481939 1.119685053 0.920788542 1.398824891 1.26287495 0.854582617 1 17.78689725 NS(ph)PVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 1 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 NS(0.313)PVT(0.313)KT(0.313)PPRDLPT(0.059)IPGVTSPSSDEPPMEASQSHLR 89.129 2.97E-05 585240000 19112 35206 25733 18681 75791 47876 108490 152180 33566 56582 TRUE FALSE FALSE 23363.39846 39323.03545 35252.70754 19701.49573 68244.98192 50382.71333 85310.22522 114857.6164 40302.38831 42477.14871 0.550022757 0.925745645 0.829921702 0.463813988 1.606628128 1.186113354 2.008379277 2.703986022 0.948801639 1 15.37439931 -5.774609129 22.60100448 1.663011103 0.718870149 0.41871966 0.503178942 67.66214574 116116.1611 0.157538586 0.180012352 1.68E-06 5.774609129 -0.944140954 NS(ph)QKHSPTSEPTPPGDALPPVSSPHTHR ddPTM_HeLa_A485_30min_R1 1 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2;A0A087WX39 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 NS(0.488)QKHS(0.488)PT(0.019)S(0.004)EPTPPGDALPPVSSPHTHR 116.94 8.83E-05 706720000 256160 365660 274840 146670 655070 281440 451790 460720 310580 392660 TRUE FALSE FALSE 313141.9083 408420.7562 376514.753 154682.2107 589848.9307 296175.7632 355261.3757 347727.6976 372910.5572 294777.0884 1.062300703 1.385524087 1.277286356 0.52474299 2.000999922 1.004744856 1.205186528 1.179629324 1.265059504 1 18.16926487 -10.14141733 3.891194553 0.999903538 1.214545202 0.032506999 0.346202444 61060237.77 103013975.6 70442.3845 0.081901018 7.22E-11 10.14141733 0.214641664 NS(ph)QKHSPTSEPTPPGDALPPVSSPHTHR ddPTM_HeLa_A486_30min_R1 1 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2;A0A087WX39 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 NS(0.465)QKHS(0.465)PT(0.035)S(0.035)EPT(0.001)PPGDALPPVSSPHTHR 101.84 0.0004986 903860000 669120 482040 315860 35904 546110 406830 632960 516760 497960 209810 TRUE FALSE FALSE 622218.1433 443841.3948 438169.451 83586.32649 477611.7915 356639.4509 474586.7132 399105.0288 541123.5737 157272.2104 3.956313337 2.822122191 2.786057689 0.531475499 3.036847962 2.267657141 3.017613297 2.537670373 3.44068143 1 17.26290425 -6.668401237 24.47762125 2.629409439 2.517188444 0 0.999199405 221.7655986 58218.56995 0.38220538 0.296054969 2.15E-07 6.668401237 -0.112220995 NS(ph)S(ph)PEDRYEEQERS(ph)PR ddPTM_HeLa_A485_30min_R1 2 NSSPEDRYEEQERSPR 16 2 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 3 0 NS(0.999)S(0.903)PEDRY(0.099)EEQERS(0.999)PR;NS(1)S(0.994)PEDRY(0.156)EEQERS(0.85)PR ; 75.524 0.0064585 1149700000 369190 425330 415970 586140 642020 390550 647250 550550 394940 827160 TRUE FALSE FALSE 451315.0418 475068.6436 569854.613 618159.344 578098.2345 410998.5941 508959.75 415526.7493 474200.8354 620964.2348 0.726797159 0.765049929 0.917693131 0.995483008 0.930968649 0.661871604 0.819628123 0.669163739 0.763652412 1 19.24415065 -6.246563869 24.93703869 0.764483711 0.871455646 0.108530603 0.114645286 1491.270506 2499940.426 0.038704501 0.038553672 5.67E-07 6.246563869 0.106971935 NS(ph)S(ph)PEDRYEEQERS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NSSPEDRYEEQERSPR 16 2 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 3 0 NS(0.99)S(0.793)PEDRY(0.22)EEQERS(0.996)PR 84.674 0.0019367 431340000 212280 218830 156700 124420 217920 220670 316110 279100 182910 331580 TRUE FALSE FALSE 197400.2682 201489.1138 217378.4366 289656.0478 190586.4416 193445.979 237015.9345 215555.0227 198764.7861 248550.2098 0.794206806 0.810657589 0.874585609 1.165382432 0.766792519 0.778297388 0.953593782 0.86724941 0.799696714 1 17.9231778 -11.45544301 2.13750676 2.204561986 0.871998401 0.108686652 0.112982817 8272467.039 758180.4668 48161003.29 0.030599332 3.50E-12 11.45544301 -1.332563586 NS(ph)SEASSGDFLDLK ddPTM_HeLa_A485_30min_R1 3 NSSEASSGDFLDLK 14 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 NS(0.96)S(0.04)EASSGDFLDLK;NS(0.845)S(0.155)EASSGDFLDLK;NS(1)SEASSGDFLDLK ;; 239.55 2.90E-35 481166000 724271 538521 343701 1150803 572789 493779 817128 587834 450604 1380641 TRUE FALSE FALSE 885382.5852 601496.3464 470850.3025 1213668.454 515760.116 519632.5049 642541.9275 443666.7898 541036.0896 1036472.608 0.85422671 0.580330191 0.454281473 1.170960472 0.497610947 0.50134707 0.619931412 0.428054525 0.52199748 1 19.98325056 -10.08939371 4.720670534 1.000018515 0.621727557 0.214200617 0.21513241 4.33E-05 8.35E-06 0.209469784 0.050801333 8.14E-11 10.08939371 -0.378290958 NS(ph)SEASSGDFLDLK ddPTM_HeLa_A486_30min_R1 5 NSSEASSGDFLDLK 14 0 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 NS(0.925)S(0.073)EAS(0.002)SGDFLDLK;NS(0.999)S(0.001)EASSGDFLDLK;NS(0.737)S(0.263)EASSGDFLDLK;NS(0.994)S(0.006)EASSGDFLDLK;NS(0.996)S(0.004)EASSGDFLDLK ;;;; 267.62 3.23E-42 970294000 1785675 1523407 561523 662942.8 953342 1824937 2041098 1681103 1283056 2761477 TRUE FALSE FALSE 1660508.404 1402686.681 778959.7437 1543364.342 833764.9568 1599794.828 1530393.692 1298352.545 1394272.327 2069985.185 0.802183714 0.677631266 0.376311748 0.745591975 0.402787886 0.772853274 0.739325915 0.627227941 0.673566331 1 20.98118901 NS(ph)SEKLPTELSK ddPTM_HeLa_A485_30min_R1 4 NSSEKLPTELSK 12 1 P38432 P38432 COIL Coilin 1 0 NS(0.979)S(0.021)EKLPTELSK;NS(0.829)S(0.171)EKLPTELSK;NS(0.979)S(0.021)EKLPTELSK;NS(0.939)S(0.061)EKLPTELSK ;;; 188.58 2.02E-13 2012940000 1913932 1425430 873933 3557510 2266110 1846355 3753870 3216820 1427414 4986800 TRUE FALSE FALSE 2339679.57 1592121.639 1197237.184 3751847.763 2040488.132 1943027.293 2951825.008 2427889.851 1713882.897 3743682.535 0.624967408 0.425282225 0.319802006 1.002181068 0.545048388 0.519014974 0.788481657 0.648529844 0.457806687 1 21.83602667 -14 0.239064916 3.241096603 0.555850507 0.294669015 0.185550297 226.4827961 2.261967876 247.4176051 0.302347871 1.00E-14 14 -2.685246095 NS(ph)SEKLPTELSK ddPTM_HeLa_A486_30min_R1 3 NSSEKLPTELSK 12 1 P38432 P38432 COIL Coilin 1 0 NS(0.968)S(0.032)EKLPTELSK;NS(0.83)S(0.17)EKLPTELSK;NS(0.956)S(0.044)EKLPTELSK ;; 202.35 2.07E-17 2807300000 2312650 1914410 728457 1414050 1643720 2374520 3624570 3142080 1541070 4177960 TRUE FALSE FALSE 2150545.178 1762705.179 1010535.059 3291979.862 1437549.311 2081575.865 2717664.249 2426696.975 1674651.188 3131771.622 0.686686463 0.562846016 0.322672015 1.051155786 0.459021118 0.664664004 0.867772168 0.774863965 0.534729664 1 21.57854758 -14 0.119066459 2.07008937 0.497772303 0.215866817 0.196912625 240.3509872 1.856904258 62.40267972 1.925846038 1.00E-14 14 -1.572317067 NS(ph)SGPQSGWMK ddPTM_HeLa_A485_30min_R1 1 NSSGPQSGWMK 11 0 F8VXG7;Q99590-2;Q99590 F8VXG7 SCAF11 Protein SCAF11 1 0 NS(0.786)S(0.209)GPQS(0.004)GWMK 68.44 0.014601 208490000 221400 211270 165810 270370 281630 224740 368340 354330 203080 495650 TRUE FALSE FALSE 270649.6662 235976.1887 227150.0189 285139.6285 253589.9283 236507.0389 289641.1499 267430.0119 243836.2932 372093.5768 0.727369896 0.634185064 0.610464768 0.766311612 0.681521919 0.635611722 0.778409433 0.718717088 0.655309063 1 18.50530596 -14 0.323387054 4.000314983 0.677095719 0.741653503 0.054779817 168.3504246 1.484199839 346.1155035 0.048869156 1.00E-14 14 -3.323219264 NS(ph)SPEDRY(ph)EEQERS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NSSPEDRYEEQERSPR 16 2 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 3 0 NS(0.975)S(0.089)PEDRY(0.972)EEQERS(0.963)PR 42.325 0.010648 0 101670 114440 70085 58264 106430 110740 151780 129100 92497 149690 TRUE FALSE FALSE 94543.45802 105371.3576 97223.78894 135641.5365 93080.55698 97078.02472 113803.0386 99706.74823 100514.7144 112206.6497 0.842583379 0.939083004 0.866470831 1.208854706 0.829545818 0.865171761 1.014227222 0.888599281 0.895799979 1 16.77579865 -11.34732334 0.005179209 1.928312946 2.24E-06 0.021940729 0.107628855 233962.3027 153.4132564 29919.02866 27249.47845 4.49E-12 11.34732334 -1.928310709 NS(ph)SPEKHILENK ddPTM_HeLa_A485_30min_R1 2 NSSPEKHILENK 12 1 E7EVA0;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein 1 0 NS(0.5)S(0.5)PEKHILENK;NS(0.5)S(0.5)PEKHILENK ; 192.96 1.18E-13 937180000 1920170 1198510 826230 3629500 2628000 1726760 3837400 2816800 1461840 6226200 TRUE FALSE FALSE 2347305.192 1338665.319 1131886.859 3827770.395 2366347.093 1817170.484 3017508.141 2125975.383 1755217.879 4674122.925 0.502191583 0.286399254 0.242160268 0.818928055 0.506265481 0.388772506 0.645577403 0.454839425 0.375518126 1 22.15626425 -11.37358227 2.302806014 4.837326183 0.470732315 0.49750108 0.1601009 10347463.08 983446.8137 207457840.9 0.04294983 4.23E-12 11.37358227 -4.366593869 NS(ph)SPEKHILENK ddPTM_HeLa_A486_30min_R1 2 NSSPEKHILENK 12 1 E7EVA0;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein 1 0 NS(0.5)S(0.5)PEKHILENK;NS(0.5)S(0.5)PEKHILENK ; 162.81 1.66E-10 317570000 772760 574480 268380 442220 675250 911090 1401440 1274990 567120 1356540 TRUE FALSE FALSE 718593.5145 528956.1126 372303.9235 1029510.509 590553.8485 798688.9791 1050784.889 984702.6098 616278.4182 1016853.554 0.706683388 0.520189078 0.366133276 1.012447175 0.580765879 0.785451332 1.033368949 0.968381932 0.606064084 1 19.95568049 -5.657728835 1.027090433 0.882292705 0.54752938 0.304752893 0.188558868 0.674543613 1.499448339 0.082979527 0.144685428 2.20E-06 5.657728835 -0.334763326 NS(ph)SSPVS(ph)PASVPGQR ddPTM_HeLa_A485_30min_R1 1 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 NS(0.476)S(0.362)S(0.162)PVS(1)PASVPGQR 138.39 7.79E-06 0 198600 180170 177080 224370 289900 184730 300780 314930 193120 343890 TRUE FALSE FALSE 242777.8848 201239.3142 242589.2609 236626.765 261036.5381 194402.1772 236515.8959 237692.9237 231877.4126 258164.5518 0.940399769 0.779500178 0.939669134 0.916573415 1.011124634 0.753016538 0.916143964 0.92070318 0.898176806 1 17.97793139 -8.804235226 0.951105826 1.000761876 0.893603575 0.153248377 0.072502029 8.228121655 8.158900703 0.086538789 0.022444535 1.57E-09 8.804235226 -0.107158301 NS(ph)SSPVSPASVPGQRR ddPTM_HeLa_A486_30min_R1 1 NSSSPVSPASVPGQRR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 NS(0.468)S(0.316)S(0.216)PVSPASVPGQRR 99.021 0.00033333 133050000 101070 92023 74094 45389 101750 87817 125230 125360 66441 142550 TRUE FALSE FALSE 93985.51493 84730.76234 102785.1811 105667.8858 88987.56622 76983.0314 93896.12945 96818.26459 72200.15938 106854.5522 0.879564914 0.792954166 0.961916727 0.988894565 0.832791532 0.720446905 0.878728398 0.906075246 0.675686322 1 16.70528884 -5.957358001 24.90423078 0.8267139 0.902909354 0.105162518 0.098307802 301.2011262 175909.1806 0.03032867 0.034389452 1.10E-06 5.957358001 0.076195454 NS(ph)TELAPPLPVR ddPTM_HeLa_A485_30min_R1 2 NSTELAPPLPVR 12 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.979)T(0.021)ELAPPLPVR;NS(0.773)T(0.227)ELAPPLPVR ; 175.29 5.67E-11 233880000 136300 97980 104190 208260 140960 76287 113630 73368 102230 261630 TRUE FALSE FALSE 166619.4648 109437.9087 142734.2167 219636.7165 126925.5275 80281.26936 89352.02223 55374.38296 122746.6233 196410.4559 0.848322784 0.557189831 0.726713942 1.118253687 0.646225919 0.40874234 0.454924977 0.281931951 0.624949536 1 17.58351221 -5.998429995 24.99504675 0.505748399 0.799989012 0.218565084 0.2210271 68.42910272 1089380.31 0.067633234 0.076141744 1.00E-06 5.998429995 0.294240614 NS(ph)TELAPPLPVR ddPTM_HeLa_A486_30min_R1 2 NSTELAPPLPVR 12 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.774)T(0.226)ELAPPLPVR;NS(0.79)T(0.21)ELAPPLPVR ; 196.37 2.83E-14 245760000 543240 633330 374860 208724 449460 588570 666090 569170 480270 586680 TRUE FALSE FALSE 505161.6813 583142.6243 520015.8311 485920.0203 393084.5358 515958.2175 499427.2368 439582.4159 521900.1903 439771.5094 1.148691242 1.32601274 1.182468214 1.104937473 0.893838112 1.173241573 1.135651642 0.999570019 1.186753073 1 18.74639462 -5.198910192 3.344637323 1.069067692 1.238655578 0.356900866 0.093087751 0.258050872 5.735583121 0.025832734 0.047083728 6.33E-06 5.198910192 0.169587885 NS(ph)TELAPPLPVRR ddPTM_HeLa_A485_30min_R1 4 NSTELAPPLPVRR 13 1 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.946)T(0.054)ELAPPLPVRR;NS(0.928)T(0.072)ELAPPLPVRR;NS(0.938)T(0.062)ELAPPLPVRR;NS(0.961)T(0.039)ELAPPLPVRR ;;; 127.22 1.58E-05 814320000 889340 1009890 878980 935570 1252150 901530 1261320 1215110 836370 1322150 TRUE FALSE FALSE 1087170.615 1127987.851 1204151.279 986677.8201 1127481.549 948732.7168 991828.678 917102.3673 1004221.787 992562.3374 1.095317215 1.13644031 1.213174462 0.994071388 1.135930215 0.955841947 0.999260843 0.923974578 1.011746819 1 19.92079819 -5.994823368 1.172847031 0.971232471 1.13672016 0.55227333 0.059031798 0.330692694 0.957604234 0.025954541 0.030021024 1.01E-06 5.994823368 0.165487689 NS(ph)TELAPPLPVRR ddPTM_HeLa_A486_30min_R1 4 NSTELAPPLPVRR 13 1 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.946)T(0.054)ELAPPLPVRR;NS(0.97)T(0.03)ELAPPLPVRR;NS(0.914)T(0.086)ELAPPLPVRR;NS(0.987)T(0.013)ELAPPLPVRR ;;; 113.33 0.00014651 748320000 676775 640627 416600 304068 571186 554219 781690 697220 476691 815310 TRUE FALSE FALSE 629336.5674 589861.3834 577918.6769 707885.6707 499542.5258 485845.0947 586102.8941 538478.2262 518010.9597 611151.0692 1.029756142 0.96516461 0.945623277 1.158282635 0.817379779 0.794967266 0.959014757 0.881088577 0.847598877 1 19.22116952 -5.786024489 24.99997089 0.876760916 1.014804977 0.436402495 0.078165704 220.769177 224493.3416 0.024118752 0.027360127 1.64E-06 5.786024489 0.138044062 NS(ph)TTIMSR ddPTM_HeLa_A486_30min_R1 1 NSTTIMSR 8 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 NS(0.655)T(0.101)T(0.244)IMSR 85.066 0.0047566 0 105490 115850 89420 39915 134880 112430 130530 136390 97138 129320 TRUE FALSE FALSE 98095.69575 106669.6241 124045.8188 92924.13719 117962.0927 98559.5297 97870.01339 105336.9744 105558.0001 96937.43027 1.011948589 1.100396656 1.279648309 0.958599139 1.216889001 1.016733469 1.009620465 1.086649131 1.088929217 1 16.56476622 NS(ph)TTLPR ddPTM_HeLa_A485_30min_R1 1 NSTTLPR 7 0 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 NS(0.539)T(0.293)T(0.169)LPR 66.692 0.024665 847060000 1601400 1571000 1404600 1657300 2536300 1547700 2851000 2328000 1211700 2337800 TRUE FALSE FALSE 1957625.905 1754714.784 1924219.99 1747834.102 2283777.067 1628735.179 2241860.559 1757054.35 1454877.076 1755029.484 1.115437617 0.999820687 1.096403227 0.995900136 1.301275612 0.928038642 1.277391964 1.00115375 0.82897586 1 20.74306384 -7.52091469 24.94887224 0.914680155 1.097956704 0.295964725 0.117212055 90.63898693 1151452.547 0.070901384 0.027719351 3.01E-08 7.52091469 0.183276549 NS(ph)TTLPR ddPTM_HeLa_A486_30min_R1 2 NSTTLPR 7 0 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 NS(0.47)T(0.123)T(0.407)LPR;NS(0.475)T(0.262)T(0.262)LPR ; 74.464 0.017386 4826920000 8630200 9163700 6585380 4471880 10332100 10460300 14357900 12974200 8610300 12656900 TRUE FALSE FALSE 8025267.546 8437535.038 9135415.499 10410762.64 9036151.675 9169814.539 10765401.56 10020257.88 9356647.737 9487529.857 0.84587534 0.889328958 0.962886614 1.097310132 0.952424057 0.966512325 1.13468961 1.05615034 0.986204826 1 23.17760109 -4.838958645 2.616608551 1.029054263 0.857141929 0.574954063 0.054756003 0.199710787 2.715060512 0.015644803 0.044446095 1.45E-05 4.838958645 -0.171912334 NS(ph)WDSPAFSNDVIR ddPTM_HeLa_A485_30min_R1 3 NSWDSPAFSNDVIR 14 0 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y695;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 NS(1)WDSPAFSNDVIR;NS(1)WDSPAFSNDVIR;NS(1)WDSPAFSNDVIR ;; 183.6 2.09E-17 448171000 367789 385938 316933 488360 542480 348670 553850 474810 352884 719370 TRUE FALSE FALSE 449602.3942 431070.0919 434179.7054 515037.8702 488468.7864 366925.8221 435515.423 358362.103 423704.582 540044.298 0.832528731 0.798212468 0.803970539 0.953695599 0.904497628 0.679436527 0.806443887 0.663579088 0.784573753 1 19.04271823 -6.244624569 24.92174953 0.767007663 0.857477414 0.105036963 0.09642717 1425.156272 2112269.435 0.030946822 0.030870501 5.69E-07 6.244624569 0.090469751 NS(ph)WDSPAFSNDVIR ddPTM_HeLa_A486_30min_R1 4 NSWDSPAFSNDVIR 14 0 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y695;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 NS(1)WDSPAFSNDVIR;NS(1)WDSPAFSNDVIR;NS(1)WDSPAFSNDVIR;NS(1)WDSPAFSNDVIR ;;; 162.76 7.38E-12 710060000 677090 732350 508370 345855 691300 745190 964850 881990 636720 914050 TRUE FALSE FALSE 629629.4875 674315.9188 705224.4786 805167.9185 604590.7079 653256.0343 723434.3249 681180.1307 691911.4023 685165.9305 0.918944535 0.984164403 1.02927546 1.175142958 0.882400424 0.953427491 1.05585274 0.994182723 1.009845019 1 19.38609389 -4.351905522 3.150789493 1.012633535 0.913524543 0.138783176 0.07043206 0.60930624 9.680156816 0.018604052 0.129907386 4.45E-05 4.351905522 -0.099108992 NSAAEIPVTSNGEVDDS(ph)REHSFNR ddPTM_HeLa_A485_30min_R1 1 NSAAEIPVTSNGEVDDSREHSFNR 24 1 P53367;P53367-2;P53367-3 P53367 ARFIP1 Arfaptin-1 1 0 NSAAEIPVT(0.001)S(0.012)NGEVDDS(0.549)REHS(0.438)FNR 90.616 0.0015883 209720000 52304 62248 64534 63443 116140 68524 106280 91198 70306 115440 TRUE FALSE FALSE 63938.84435 69527.36211 88407.81208 66908.73044 104576.6938 72111.81068 83572.40977 68831.54751 84415.76932 86662.93252 0.737787685 0.802273361 1.020134093 0.772057078 1.206706152 0.832095206 0.964338586 0.794244385 0.974070077 1 16.40312744 -4.599596578 5.728687639 0.937496741 0.752699155 0.258517011 0.120269665 0.240290317 13.05663072 0.029111996 0.080676143 2.51E-05 4.599596578 -0.184797586 NSAAEIPVTSNGEVDDS(ph)REHSFNR ddPTM_HeLa_A486_30min_R1 1 NSAAEIPVTSNGEVDDSREHSFNR 24 1 P53367;P53367-2;P53367-3 P53367 ARFIP1 Arfaptin-1 1 0 NSAAEIPVTSNGEVDDS(0.5)REHS(0.5)FNR 94.275 0.0012297 293750000 109320 96928 73174 32761 126390 95439 137630 130350 89119 120270 TRUE FALSE FALSE 101657.2325 89247.07227 101508.9325 76269.26365 110536.9877 83664.70653 103193.5183 100672.1505 96843.90668 90153.60917 1.127600253 0.98994453 1.125955282 0.84599235 1.226096089 0.928023928 1.14464101 1.116673547 1.07420998 1 16.46009763 NSAPASVS(ph)PDGTR ddPTM_HeLa_A485_30min_R1 1 NSAPASVSPDGTR 13 0 C9J637;A0A590UJ51;H0Y7H7;H0Y599;Q8N1I0-2;Q8N1I0;Q8N1I0-3;A0A590UJM5 C9J637 DOCK4 Dedicator of cytokinesis protein 4 1 0 NSAPAS(0.23)VS(0.77)PDGTR 83.856 0.002228 0 94609 182720 200040 117810 186370 131770 152120 155990 152500 147810 TRUE FALSE FALSE 115654.4457 204087.5145 274043.1204 124245.662 167814.3484 138669.2734 119618.3193 117733.2079 183105.3512 110963.6872 1.042272914 1.839227946 2.469664871 1.119696588 1.512335725 1.249681557 1.077995174 1.061006631 1.650137588 1 16.75972811 NSASATT(ph)PLSGNSSR ddPTM_HeLa_A486_30min_R1 2 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASAT(0.05)T(0.95)PLSGNSSR;NSASAT(0.03)T(0.807)PLS(0.163)GNSSR ; 237.46 3.85E-32 188180000 243400 234630 177845 109041 268310 237380 290560 287870 201104 294820 TRUE FALSE FALSE 226338.9169 216037.0643 246711.3469 253852.9586 234656.0579 208094.4691 217858.8148 222328.2852 218535.8566 220995.153 1.024180457 0.977564717 1.11636542 1.148681114 1.061815405 0.941624584 0.985808113 1.006032404 0.988871718 1 17.7536552 -6.177883707 7.76855227 0.985041514 1.068652527 0.433366145 0.046419898 0.327145817 27.27415998 0.017157028 0.017162366 6.64E-07 6.177883707 0.083611014 NSASATTPLS(ph)GNS(ph)SR ddPTM_HeLa_A485_30min_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 2 0 NSASAT(0.002)T(0.007)PLS(0.983)GNS(0.556)S(0.453)R 85.563 0.003413 310680000 182250 302210 290750 238730 411490 249700 348040 354730 256260 311680 TRUE FALSE FALSE 222790.8837 337550.8306 398310.5241 251771.2154 370520.6108 262773.9059 273678.4108 267731.9113 307689.0314 233983.912 0.952163257 1.4426241 1.702298763 1.076019343 1.583530284 1.123042621 1.169646273 1.144232135 1.3150008 1 17.83604981 -6.3182589 24.9913431 1.160602626 1.360603595 0.174697282 0.217343879 520.3208723 228854.7977 0.07495918 0.06610781 4.81E-07 6.3182589 0.200000969 NSASATTPLS(ph)GNSSR ddPTM_HeLa_A485_30min_R1 3 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATT(0.017)PLS(0.98)GNS(0.003)SR;NSASATT(0.013)PLS(0.987)GNSSR;NSASAT(0.001)T(0.068)PLS(0.931)GNSSR ;; 213.7 3.19E-26 1254160000 519824 622870 645096 694840 971460 615610 937330 853110 555253 1015330 TRUE FALSE FALSE 635457.0554 695709.2283 883743.8551 732797.3498 874738.0314 647842.3877 737061.7882 643883.4349 666687.184 762226.9168 0.83368488 0.912732433 1.159423573 0.961390019 1.147608425 0.849933758 0.966984729 0.844739828 0.874657099 1 19.53986103 -6.311156477 24.99997585 0.901291927 1.004337394 0.178471907 0.102245115 648.6650519 326175.8373 0.036450266 0.032146156 4.88E-07 6.311156477 0.103045467 NSASATTPLS(ph)GNSSR ddPTM_HeLa_A486_30min_R1 3 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATT(0.021)PLS(0.979)GNSSR;NSASATT(0.009)PLS(0.991)GNSSR;NSASAT(0.001)T(0.107)PLS(0.892)GNSSR ;; 250.1 6.87E-42 1228300000 819930 834520 602510 363154 896830 776730 1148500 1068540 748770 1051020 TRUE FALSE FALSE 762457.1411 768389.5959 835818.0078 845440.8648 784341.2188 680904.9498 861133.1524 825256.7681 813673.9865 787837.751 0.967784471 0.975314517 1.06090119 1.073115453 0.995561863 0.864270529 1.093033624 1.047495842 1.032793853 1 19.58753902 NSASATTPLSGNS(ph)SR ddPTM_HeLa_A485_30min_R1 4 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATTPLS(0.035)GNS(0.638)S(0.327)R;NSASATTPLSGNS(0.5)S(0.5)R;NSASATTPLS(0.001)GNS(0.664)S(0.334)R;NSASAT(0.001)T(0.018)PLS(0.165)GNS(0.503)S(0.314)R ;;; 172.2 2.59E-12 1941260000 1265900 1541810 1345560 1625520 2370140 1310490 2290520 2001770 1212550 2249890 TRUE FALSE FALSE 1547495.088 1722111.268 1843338.637 1714318.042 2134160.54 1379105.23 1801131.69 1510832.769 1455897.663 1689033.829 0.916201358 1.019583645 1.091356849 1.014969631 1.263539251 0.816505393 1.066368038 0.894495269 0.861970695 1 20.68776679 -6.292980184 24.99947659 0.929930119 1.057936927 0.288978118 0.104431686 938.9102411 744184.3759 0.036302664 0.032018919 5.09E-07 6.292980184 0.128006807 NSASATTPLSGNS(ph)SR ddPTM_HeLa_A486_30min_R1 3 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATTPLS(0.008)GNS(0.496)S(0.496)R;NSASATTPLS(0.056)GNS(0.597)S(0.348)R;NSASAT(0.007)T(0.024)PLS(0.124)GNS(0.423)S(0.423)R ;; 118.48 0.00010242 1583880000 1467350 1394870 1008020 669910 1615550 1429000 1950870 1807610 1258840 1971690 TRUE FALSE FALSE 1364496.342 1284335.421 1398352.34 1559584.335 1412912.655 1252704.509 1462741.692 1396056.663 1367957.265 1477965.99 0.923225806 0.868988481 0.946132962 1.055223426 0.955984552 0.84758683 0.989699155 0.944579694 0.925567485 1 20.49518164 -8.648926993 0.00721813 1.925498287 1.18E-06 0.085315522 0.055279314 15725.57524 43.15188391 5871.05611 5637.623697 2.24E-09 8.648926993 -1.925497104 NSASATTPLSGNSS(ph)R ddPTM_HeLa_A485_30min_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASAT(0.001)T(0.027)PLS(0.071)GNS(0.164)S(0.737)R 87.676 0.001348 447890000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 NSASATTPLSGNSS(ph)R ddPTM_HeLa_A486_30min_R1 2 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATTPLSGNS(0.246)S(0.754)R;NSASATTPLS(0.008)GNS(0.238)S(0.754)R ; 204.26 2.05E-25 688620000 648120 617960 449970 280179 702140 621420 868930 772440 524480 755040 TRUE FALSE FALSE 602690.1349 568990.599 624210.4346 652270.8715 614071.054 544755.5185 651514.5234 596572.2742 569942.3487 565973.0695 1.064874227 1.005331578 1.102897767 1.15247687 1.084982815 0.962511377 1.151140502 1.054064772 1.007013194 1 19.11037388 -7.702547912 4.116318482 1.00179975 1.074079705 0.205714498 0.055126943 0.350991844 11.45137625 0.046076424 0.014650605 1.98E-08 7.702547912 0.072279955 NSAT(ph)FKSFEDR ddPTM_HeLa_A485_30min_R1 1 NSATFKSFEDR 11 1 O43399-2;O43399-4;O43399-3;O43399-6;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 NS(0.002)AT(0.888)FKS(0.11)FEDR 93.478 0.002737 341740000 297190 267590 201580 497100 616090 331810 782990 843170 399400 1043300 TRUE FALSE FALSE 363298.8902 298882.3228 276152.8304 524255.3143 554749.9164 349183.0585 615697.7901 636381.2355 479555.9165 783224.5105 0.463850257 0.381604915 0.35258451 0.669355092 0.70828978 0.445827542 0.786106387 0.812514454 0.612284103 1 19.57906639 -5.8577924 0.150219561 1.14191919 1.17E-11 0.653965901 0.117987179 7.95955527 0.416995164 0.841508169 2.233814225 1.39E-06 5.8577924 -1.14191919 NSATCHS(ph)EDS(ph)DLEID ddPTM_HeLa_A485_30min_R1 4 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 2 0 NS(0.001)AT(0.023)CHS(0.976)EDS(1)DLEID;NSATCHS(1)EDS(1)DLEID;NSAT(0.002)CHS(0.998)EDS(1)DLEID;NSATCHS(1)EDS(1)DLEID ;;; 170.78 6.62E-12 2203570000 1433490 1607000 1615850 1762800 2639800 1377070 2389400 2081680 1507970 2544070 TRUE FALSE FALSE 1752364.905 1794924.671 2213620.156 1859097.3 2376972.243 1449171.256 1878885.17 1571144.716 1810605.747 1909880.169 0.917526101 0.939810099 1.159036149 0.973410442 1.244566168 0.758776011 0.983771234 0.822640468 0.948020602 1 20.86505069 -6.277613877 24.99921742 0.896627306 1.04307244 0.283608401 0.114334338 1084.484473 1676168.664 0.039005574 0.034502443 5.28E-07 6.277613877 0.146445133 NSATCHS(ph)EDS(ph)DLEID ddPTM_HeLa_A486_30min_R1 4 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 2 0 NSATCHS(1)EDS(1)DLEID;NSATCHS(1)EDS(1)DLEID;NS(0.001)AT(0.022)CHS(0.977)EDS(1)DLEID;NSAT(0.002)CHS(0.998)EDS(1)DLEID ;;; 255.72 6.40E-50 2641820000 2785240 3277170 2312600 799830 3579040 3184630 3959380 3809930 2894660 3284870 TRUE FALSE FALSE 2590009.059 3017475.114 3208100.654 1862044.661 3130123.43 2791742.73 2968701.246 2942492.109 3145571.459 2462317.171 1.051858424 1.225461589 1.302878724 0.756216414 1.271210495 1.13378681 1.205653472 1.195009377 1.277484272 1 21.23158518 NSATCHSEDS(ph)DLEID ddPTM_HeLa_A485_30min_R1 4 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 1 0 NSATCHS(0.001)EDS(0.999)DLEID;NSATCHS(0.001)EDS(0.999)DLEID;NSATCHS(0.129)EDS(0.871)DLEID;NSATCHS(0.207)EDS(0.793)DLEID ;;; 147.75 6.77E-08 2476320000 1375280 1832010 1696550 1567570 2593480 1424890 2468160 2148470 1480850 2560710 TRUE FALSE FALSE 1681206.291 2046247.633 2324174.444 1653202.38 2335264.025 1499495.037 1940817.453 1621554.364 1778043.012 1922372.123 0.87454779 1.064438882 1.20901381 0.859980417 1.214782506 0.780023295 1.009595088 0.843517415 0.924921346 1 20.8744562 -6.272567741 24.99929028 0.907955257 1.04454019 0.217199065 0.12609492 1121.705256 2519846.676 0.041973042 0.03738238 5.34E-07 6.272567741 0.136584933 NSATCHSEDS(ph)DLEID ddPTM_HeLa_A486_30min_R1 3 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 1 0 NSATCHS(0.001)EDS(0.999)DLEID;NSATCHS(0.132)EDS(0.868)DLEID;NSATCHS(0.16)EDS(0.84)DLEID ;; 201.7 2.52E-25 1249170000 1602330 1907380 1476900 304186 1926400 1762860 2164670 2125820 1588020 1794450 TRUE FALSE FALSE 1490014.941 1756232.262 2048795.233 708160.3807 1684772.949 1545376.257 1623046.67 1641817.192 1725670.852 1345108.04 1.10772882 1.305644015 1.523145481 0.526471004 1.252518682 1.148886343 1.206629224 1.220583881 1.282923602 1 20.35929063 -11.33495072 2.140761053 0.094256652 1.173749166 0.044962976 0.241830147 5540868.86 752810.2125 24303821.14 0.0634164 4.62E-12 11.33495072 1.079492513 NSATFKS(ph)FEDR ddPTM_HeLa_A485_30min_R1 7 NSATFKSFEDR 11 1 O43399-2;O43399-4;O43399-3;O43399-6;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 NSAT(0.008)FKS(0.992)FEDR;NSAT(0.001)FKS(0.999)FEDR;NSAT(0.001)FKS(0.999)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSAT(0.28)FKS(0.719)FEDR ;;;;;; 182.72 8.45E-11 12045800000 5375200 4911500 3740800 8771740 11082310 5850670 13704270 14703250 7095650 19083200 TRUE FALSE FALSE 6570894.696 5485857.201 5124677.588 9250917.945 9978916.304 6157002.034 10776240.76 11097254.88 8519681.87 14326109.44 0.458665678 0.382927216 0.357715932 0.645738327 0.696554521 0.429774885 0.752209859 0.774617486 0.594696132 1 23.77214353 -6.974215198 0.11914985 1.30587818 5.12E-13 0.672038857 0.111490615 5.445149804 0.509191184 2.229058594 2.833789379 1.06E-07 6.974215198 -1.30587818 NSATFKS(ph)FEDR ddPTM_HeLa_A486_30min_R1 8 NSATFKSFEDR 11 1 O43399-2;O43399-4;O43399-3;O43399-6;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 NSAT(0.001)FKS(0.999)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSAT(0.001)FKS(0.999)FEDR;NSATFKS(1)FEDR;NSATFKS(1)FEDR;NSAT(0.022)FKS(0.978)FEDR;NSATFKS(1)FEDR ;;;;;;; 189.8 4.24E-11 14561010000 14866400 11952910 5409740 12145990 15087120 22894470 41671900 45042600 11944190 28667690 TRUE FALSE FALSE 13824342.13 11005717.88 7504536.206 28276478.54 13194752.73 20069983.07 31245149.86 34787383.25 12979522.01 21489113.83 0.643318391 0.512153175 0.34922502 1.315851308 0.614020328 0.93396048 1.453998993 1.618837497 0.604004526 1 24.35710265 -5.593060548 0.920543433 1.176149089 0.491255686 0.308735547 0.342459894 0.720088335 1.269402306 0.160876711 0.320281342 2.55E-06 5.593060548 -0.684893403 NSATFKS(ph)FEDRVGTIK ddPTM_HeLa_A485_30min_R1 2 NSATFKSFEDRVGTIK 16 2 O43399-2;O43399-4;O43399-3;O43399-6;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 NSAT(0.021)FKS(0.979)FEDRVGTIK;NSAT(0.003)FKS(0.997)FEDRVGTIK ; 200.35 1.75E-25 1539180000 407820 627480 314320 493000 1656620 1138280 3168200 6438000 658200 1334810 TRUE FALSE FALSE 498538.152 700858.3276 430600.0479 519931.3417 1491681.096 1197878.581 2491288.188 4859070.406 790294.7026 1002066.432 0.497510081 0.699413038 0.429712077 0.518859154 1.488604995 1.19540835 2.486150726 4.849050171 0.78866498 1 19.93454673 -6.458130122 1.77215296 2.571737361 0.623999325 0.299954299 1.08065774 0.374260767 2.349098101 0.480607358 0.379946304 3.48E-07 6.458130122 -1.947738036 NSATFKS(ph)FEDRVGTIK ddPTM_HeLa_A486_30min_R1 2 NSATFKSFEDRVGTIK 16 2 O43399-2;O43399-4;O43399-3;O43399-6;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 NSAT(0.003)FKS(0.997)FEDRVGTIK;NSAT(0.021)FKS(0.978)FEDRVGTIK ; 168.14 2.07E-12 791040000 565020 229004 151393 658340 763150 585300 1720780 2199770 228803 1168360 TRUE FALSE FALSE 525415.0158 210856.889 210016.424 1532648.791 667428.6109 513091.6369 1290222.643 1698930.392 248635.8283 875795.0513 0.59992919 0.240760539 0.23980088 1.750008508 0.762083104 0.585858114 1.473201569 1.939872107 0.283897275 1 19.74023377 -5.234075354 24.72579346 1.13107409 0.348223063 0.330512584 0.490841005 743.6965658 671993.8295 0.133476916 0.231114395 5.83E-06 5.234075354 -0.782851028 NSDGGS(ph)DPETQK ddPTM_HeLa_A486_30min_R1 1 NSDGGSDPETQK 12 0 O75554-2;O75554 O75554-2 WBP4 WW domain-binding protein 4 1 0 NSDGGS(1)DPETQK 194.77 1.08E-13 192640000 460760 275050 178510 192500 218080 697630 498760 378860 516930 769010 TRUE FALSE FALSE 428463.1034 253254.0363 247633.8527 448149.7284 190726.3729 611563.5036 373964.9727 292601.8485 561737.9086 576444.8906 0.743285456 0.439337811 0.429588078 0.777437246 0.330866621 1.060922759 0.648743668 0.507597263 0.974486751 1 19.13682316 -6.254245744 24.98689033 0.795724517 0.544883833 0.334632373 0.20305566 774.6829797 2690841.686 0.066487772 0.065148284 5.57E-07 6.254245744 -0.250840684 NSDGGS(ph)DPETQKEK ddPTM_HeLa_A485_30min_R1 3 NSDGGSDPETQKEK 14 1 O75554-2;O75554 O75554-2 WBP4 WW domain-binding protein 4 1 0 NSDGGS(0.985)DPET(0.015)QKEK;NSDGGS(0.999)DPETQKEK;NS(0.063)DGGS(0.933)DPET(0.004)QKEK ;; 109.72 0.00013843 852350000 2154730 1123630 758960 5404730 2332980 1616910 3823720 2888890 1504020 7563400 TRUE FALSE FALSE 2634042.255 1255028.754 1039730.887 5699976.714 2100700.32 1701568.907 3006750.985 2180385.198 1805863.018 5677983.574 0.463904522 0.221034235 0.18311622 1.003873407 0.369972948 0.299678378 0.529545559 0.384006958 0.318046538 1 22.43694724 -10.11994033 3.837327452 1.000234037 0.420904823 0.387767973 0.218912542 213268935 391626305.7 650790.9658 0.054557131 7.59E-11 10.11994033 -0.579329214 NSDGGS(ph)DPETQKEK ddPTM_HeLa_A486_30min_R1 4 NSDGGSDPETQKEK 14 1 O75554-2;O75554 O75554-2 WBP4 WW domain-binding protein 4 1 0 NSDGGS(1)DPETQKEK;NSDGGS(1)DPETQKEK;NS(0.001)DGGS(0.999)DPET(0.001)QKEK;NSDGGS(0.999)DPET(0.001)QKEK ;;; 137.69 3.30E-06 1757920000 3673510 2265340 1074880 3705740 2495960 5840520 7511800 5777440 2939030 8303700 TRUE FALSE FALSE 3416015.919 2085826.208 1491102.322 8627149.998 2182893.423 5119976.024 5632268.188 4462043.033 3193787.487 6224399.472 0.548810521 0.335104811 0.23955762 1.38602126 0.350699442 0.822565462 0.904869331 0.716863218 0.51310773 1 22.56950322 NSDLLTS(ph)PDVGLLK ddPTM_HeLa_A485_30min_R1 2 NSDLLTSPDVGLLK 14 0 P05412 P05412 JUN Transcription factor AP-1 1 0 NSDLLT(0.117)S(0.883)PDVGLLK;NSDLLT(0.265)S(0.735)PDVGLLK ; 190.11 1.07E-17 114813000 501970 391890 245080 560310 636890 251620 496580 353150 214820 507300 TRUE FALSE FALSE 613631.4947 437718.1265 335745.2906 590918.3165 573478.9953 264794.4341 390481.6263 266539.4088 257932.4036 380839.4462 1.611260338 1.149350812 0.881592739 1.551620565 1.505828771 0.695291511 1.025318229 0.699873428 0.67727334 1 18.53882339 -6.266446744 24.99098134 0.813653812 1.315640214 0.564258844 0.228118633 350.9907288 1751735.263 0.082613842 0.075136488 5.41E-07 6.266446744 0.501986402 NSDLLTS(ph)PDVGLLK ddPTM_HeLa_A486_30min_R1 2 NSDLLTSPDVGLLK 14 0 P05412 P05412 JUN Transcription factor AP-1 1 0 NSDLLT(0.024)S(0.976)PDVGLLK;NSDLLT(0.126)S(0.874)PDVGLLK ; 134.9 1.18E-05 54461000 244250 225970 130109 146875 228946 260690 370380 326280 165980 283970 TRUE FALSE FALSE 227129.3363 208063.3142 180490.6892 341932.4227 200229.4578 228528.7183 277707.0065 251993.1666 180367.28 212862.0637 1.067025906 0.977456061 0.847923233 1.606356796 0.940653559 1.073600032 1.304633629 1.183833147 0.847343472 1 17.69955933 NSESESNKVAAETQS(ph)PSLFGSTK ddPTM_HeLa_A485_30min_R1 1 NSESESNKVAAETQSPSLFGSTK 23 1 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 1 0 NSESESNKVAAETQS(1)PSLFGSTK 281.13 2.58E-75 345310000 328060 245970 137390 415070 444870 329310 569070 563760 200900 545210 TRUE FALSE FALSE 401035.8152 274734.0518 188216.2783 437744.2231 400577.1808 346552.1624 447483.5456 425496.9761 241218.7872 409299.1808 0.97981094 0.671230397 0.459850122 1.069496944 0.978690404 0.846696448 1.093292063 1.039574463 0.589345883 1 18.64279625 -5.27989727 24.96309938 0.950397581 0.700390437 0.274425134 0.17992081 998.4625589 1350353.375 0.050730869 0.075397586 5.25E-06 5.27989727 -0.250007144 NSESESNKVAAETQS(ph)PSLFGSTK ddPTM_HeLa_A486_30min_R1 2 NSESESNKVAAETQSPSLFGSTK 23 1 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 1 0 NSESESNKVAAET(0.002)QS(0.992)PS(0.006)LFGSTK;NSESESNKVAAETQS(0.997)PS(0.003)LFGSTK ; 223.56 1.98E-38 670420000 743560 449640 188768 373380 566960 631810 997420 941520 416460 1123670 TRUE FALSE FALSE 691440.2837 414008.8888 261864.025 869247.5096 495846.5901 553863.706 747854.9664 727156.4492 452559.0881 842295.7181 0.820899678 0.49152439 0.310893216 1.031998016 0.588684686 0.657564433 0.887876966 0.863303034 0.5372924 1 19.68396731 -13.99999995 0.076577283 2.035888611 0.355777451 0.175830552 0.204762297 452.0490582 2.460790125 80.29566106 8.25466225 1.00E-14 13.99999995 -1.680111159 NSFNNPAYYVLEGVPHQLLPPEPPS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 NSFNNPAYYVLEGVPHQLLPPEPPSPAR 28 0 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 NSFNNPAYYVLEGVPHQLLPPEPPS(1)PAR 130.16 3.71E-06 400910000 45028 34146 40294 63590 72105 32341 58391 34181 31236 96538 TRUE FALSE FALSE 55044.32326 38139.07767 55200.42737 67063.76068 64925.97302 34034.32475 45915.28584 25798.05616 37504.77869 72472.85325 0.759516437 0.526253293 0.761670403 0.92536388 0.895866109 0.469614804 0.633551513 0.355968545 0.517501064 1 16.14515307 -6.268181144 24.98716938 0.557464239 0.767738776 0.170563034 0.187409778 835.234294 3095640.743 0.065271752 0.058834153 5.39E-07 6.268181144 0.210274536 NSFNNPAYYVLEGVPHQLLPPEPPS(ph)PARAPVPSATK ddPTM_HeLa_A485_30min_R1 1 NSFNNPAYYVLEGVPHQLLPPEPPSPARAPVPSATK 36 1 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 NSFNNPAYYVLEGVPHQLLPPEPPS(1)PARAPVPSATK 148.29 9.16E-10 253830000 86242 93453 66292 83261 158610 100660 200120 216780 66961 133140 TRUE FALSE FALSE 105426.2354 104381.5154 90816.16944 87809.3376 142818.2315 105930.402 157362.7272 163614.3651 80399.4585 99950.64826 1.054782907 1.044330549 0.908610109 0.878526944 1.428887496 1.059827063 1.574404268 1.636951515 0.804391566 1 16.6089283 -5.756369958 24.99964206 1.289228434 0.972263704 0.223806446 0.248581512 172.3263184 849814.2414 0.073577672 0.092054031 1.75E-06 5.756369958 -0.31696473 NSFNNPAYYVLEGVPHQLLPPEPPS(ph)PARAPVPSATK ddPTM_HeLa_A486_30min_R1 1 NSFNNPAYYVLEGVPHQLLPPEPPSPARAPVPSATK 36 1 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 NSFNNPAYYVLEGVPHQLLPPEPPS(1)PARAPVPSATK 155.52 3.47E-10 151460000 43079 33431 17633 20179 35338 36933 59665 58495 21009 60344 TRUE FALSE FALSE 40059.38456 30781.80581 24460.96983 46977.73179 30905.57853 32376.58197 44736.18593 45176.96544 22830.07704 45233.46963 0.885613792 0.6805095 0.540771469 1.038561317 0.683245809 0.715766052 0.989006289 0.998750832 0.504716468 1 15.46510304 -6.734197259 24.98856963 0.873014435 0.753476888 0.086889638 0.183490646 563.4399444 516829.8284 0.069280847 0.053651138 1.84E-07 6.734197259 -0.119537547 NSGEPLPPKPGPGS(ph)PSHPGALDLDGVSR ddPTM_HeLa_A485_30min_R1 2 NSGEPLPPKPGPGSPSHPGALDLDGVSR 28 1 A1X283;G3V144;A0A1B0GUF2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 NSGEPLPPKPGPGS(0.957)PS(0.043)HPGALDLDGVSR;NSGEPLPPKPGPGS(0.539)PS(0.461)HPGALDLDGVSR ; 165.13 4.44E-14 3280100000 1109090 1069100 883200 1632830 1645240 1047290 1868450 1741120 953550 2180900 TRUE FALSE FALSE 1355803.244 1194121.945 1209932.433 1722027.368 1481434.129 1102124.485 1469240.394 1314107.59 1144918.739 1637241.766 0.828102038 0.729349794 0.739006577 1.051785633 0.90483529 0.673159278 0.89738756 0.802635027 0.699297295 1 20.64283595 NSGEPLPPKPGPGS(ph)PSHPGALDLDGVSR ddPTM_HeLa_A486_30min_R1 2 NSGEPLPPKPGPGSPSHPGALDLDGVSR 28 1 A1X283;G3V144;A0A1B0GUF2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 NSGEPLPPKPGPGS(0.966)PS(0.034)HPGALDLDGVSR;NSGEPLPPKPGPGS(0.997)PS(0.003)HPGALDLDGVSR ; 183.93 1.53E-20 1518290000 893670 774750 471450 372560 875200 869510 1144840 1165880 691240 1225390 TRUE FALSE FALSE 831028.3479 713355.9884 654008.0659 867338.5081 765424.2551 762238.6967 858388.9231 900434.575 751157.2398 918544.368 0.904723143 0.776615712 0.712004873 0.944253254 0.833301343 0.829833292 0.934510028 0.980284248 0.817769142 1 19.80898988 -7.11523384 0.330543449 0.995441597 0.792779373 0.292172676 0.074874995 1.762168907 0.585444674 0.111699385 0.124685646 7.67E-08 7.11523384 -0.202662223 NSGLSK(ac)EQK ddPTM_HeLa_A485_30min_R1 2 NSGLSKEQK 9 1 O95251-4;O95251;O95251-2;E7EUP3;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 1 ; NSGLSK(1)EQK;NSGLSK(1)EQK 268.69 9.86E-42 108296000 109674 95386 64232 178390 150524 88929 181924 146565 77134 244430 FALSE TRUE FALSE 134070.6029 106540.563 87994.08972 188134.994 135537.302 93585.18493 143054.4512 110619.7039 92614.08629 183498.0994 0.730637556 0.580608537 0.479536791 1.025269442 0.73863055 0.51000629 0.779596365 0.602838418 0.504714145 1 17.48540559 -10.56294889 2.831999953 1.019425163 0.663882372 0.29406312 0.157381847 42963598.72 44044327.15 6308308.345 0.040111131 2.74E-11 10.56294889 -0.355542791 NSGLSK(ac)EQK ddPTM_HeLa_A486_30min_R1 2 NSGLSKEQK 9 1 O95251-4;O95251;O95251-2;E7EUP3;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 1 ; NSGLSK(1)EQK;NSGLSK(1)EQK 256.47 8.60E-32 129141000 176290 148086 66257 89170 132193 175957 255540 216950 127978 276280 FALSE TRUE FALSE 163932.9814 136351.126 91913.48482 207592.2664 115612.1213 154249.2143 191601.1892 167555.221 139071.2361 207097.6897 0.791573202 0.658390377 0.443817046 1.002388132 0.558249208 0.744813786 0.925172992 0.80906369 0.671524807 1 17.65995193 -13.99999988 0.109651652 1.868442952 0.578248064 0.225132343 0.154007198 248.7636622 1.812013751 48.34751881 1.941331047 1.00E-14 13.99999988 -1.290194888 NSGS(ph)DGSPSPLLAR ddPTM_HeLa_A485_30min_R1 1 NSGSDGSPSPLLAR 14 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 NSGS(0.998)DGS(0.002)PSPLLAR 167.41 5.19E-12 187160000 221130 238690 221610 276680 352150 264630 335670 320070 222150 364380 TRUE FALSE FALSE 270319.6056 266602.7192 303592.761 291794.3278 317088.7095 278485.6176 263951.3623 241572.3306 266733.4673 273546.7719 0.988202506 0.974614752 1.10983858 1.066707261 1.159175476 1.018054849 0.964922234 0.883111612 0.975092725 1 18.06142801 -6.691855723 3.525705978 0.944397298 1.060210822 0.412809549 0.057610215 0.228208755 5.663908866 0.025419035 0.018514615 2.03E-07 6.691855723 0.115813523 NSGS(ph)DGSPSPLLAR ddPTM_HeLa_A486_30min_R1 2 NSGSDGSPSPLLAR 14 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 NS(0.004)GS(0.995)DGS(0.001)PSPLLAR;NS(0.004)GS(0.994)DGS(0.002)PSPLLAR ; 122.75 3.66E-05 127960000 656900 680160 508520 231230 763580 660050 793310 770050 522120 717800 TRUE FALSE FALSE 610854.7022 626261.6445 705432.5626 538315.1257 667804.6763 578619.7419 594815.4472 594726.4251 567377.782 538058.2079 1.135294831 1.163929172 1.311071093 1.000477491 1.24113835 1.07538503 1.105485315 1.105319864 1.054491454 1 19.03740273 -7.307476531 0.383248047 0.99467665 1.190909444 0.326984092 0.077278567 1.353425616 0.570225386 0.095105819 0.082897812 4.93E-08 7.307476531 0.196232794 NSGSDGSPS(ph)PLLAR ddPTM_HeLa_A485_30min_R1 1 NSGSDGSPSPLLAR 14 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 NSGSDGS(0.038)PS(0.962)PLLAR 107.5 0.00032774 159200000 210110 274760 245140 255140 352640 237360 354650 354470 228740 362380 TRUE FALSE FALSE 256848.2446 306890.7919 335827.4871 269077.6522 317529.9234 249787.8026 278876.1303 267535.6767 274646.0199 272045.3351 0.944137655 1.128086948 1.234454129 0.989091219 1.167194884 0.918184473 1.025109033 0.983423136 1.009559748 1 18.05348756 -6.261470976 25 0.988585085 1.096695932 0.293120293 0.081653388 3.74155184 2959070.792 0.027425014 0.025760927 5.48E-07 6.261470976 0.108110848 NSGSFPS(ph)PSIS(ph)PR ddPTM_HeLa_A485_30min_R1 1 NSGSFPSPSISPR 13 0 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 2 0 NS(0.002)GS(0.003)FPS(0.963)PS(0.036)IS(0.997)PR 80.534 0.0021129 0 92251 109400 81316 124580 117300 78094 125190 126590 79764 162870 TRUE FALSE FALSE 112771.9167 122193.3783 111398.1722 131385.4899 105621.2001 82182.88108 98442.13379 95543.60401 95771.90316 122269.5064 0.922322499 0.999377375 0.911087118 1.074556476 0.863839262 0.672145357 0.805124161 0.781418089 0.783285269 1 16.89970512 -5.990694312 19.33076386 0.791580278 0.973181566 0.450715091 0.086870278 10.36884018 21535.86045 0.025210605 0.028481361 1.02E-06 5.990694312 0.181601288 NSGSFPS(ph)PSIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NSGSFPSPSISPR 13 0 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 2 0 NS(0.007)GS(0.006)FPS(0.733)PS(0.256)IS(0.998)PR 77.746 0.013762 88163000 137480 123330 85849 48980 135160 129100 158780 150660 117990 182200 TRUE FALSE FALSE 127843.3619 113556.8816 119092.0319 114027.9153 118206.9725 113172.9546 119051.5646 116358.0069 128217.4682 136575.9341 0.936060682 0.831456013 0.871984019 0.834904891 0.865503672 0.828644925 0.87168772 0.851965668 0.938799863 1 17.05934376 -7.95175352 3.048592794 0.999487923 0.859180493 0.698792905 0.029586073 0.111950612 2.281223426 0.026447482 0.00709435 1.12E-08 7.95175352 -0.14030743 NSGSFPSPSIS(ph)PR ddPTM_HeLa_A485_30min_R1 1 NSGSFPSPSISPR 13 0 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 NSGSFPSPS(0.009)IS(0.991)PR 107.82 0.00034266 0 84567 98590 91782 117890 126000 98870 146320 142430 64746 175970 TRUE FALSE FALSE 103378.6374 110119.2429 125735.9812 124330.0322 113454.9976 104046.6803 115057.5367 107498.8192 77739.92831 132103.9175 0.782555426 0.833580449 0.951796007 0.941153257 0.858831439 0.787612376 0.870962337 0.813744371 0.588475571 1 17.01131372 -6.117524895 4.838698371 0.804584279 0.881640553 0.07741787 0.105043518 0.559602798 19.87888807 0.035109987 0.03534478 7.63E-07 6.117524895 0.077056274 NSGSFPSPSIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NSGSFPSPSISPR 13 0 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 NSGSFPSPS(0.001)IS(0.999)PR 111.43 0.00029211 146650000 104590 115490 67953 49257 104800 89217 144320 135210 82982 122870 TRUE FALSE FALSE 97258.7811 106338.1518 94266.22144 114672.7853 91655.00678 78210.31363 108209.6095 104425.6346 90174.94657 92102.55225 1.055983561 1.154562487 1.023491957 1.245055457 0.995140792 0.849165541 1.174881769 1.133797404 0.979071094 1 16.49095351 -1 0.083182073 0.953380043 1.372430604 0.061497563 0.10699261 627.9110267 3.799835107 2.759336452 30.15184023 0.1 1 0.41905056 NSIPVS(ph)PVRPKPIEK ddPTM_HeLa_A485_30min_R1 1 NSIPVSPVRPKPIEK 15 2 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 NSIPVS(1)PVRPKPIEK 119.87 3.57E-05 409680000 306900 253520 152980 499170 443490 297770 522990 491360 239810 821130 TRUE FALSE FALSE 375168.8462 283166.9587 209573.668 526438.3931 399334.5784 313360.7768 411248.9141 370853.1896 287937.6673 616437.4028 0.608608181 0.459360443 0.339975587 0.854001381 0.647810429 0.508341602 0.667138159 0.601607216 0.467099605 1 19.23359488 -10.91907156 2.458860888 1.268899273 0.574707722 0.47980315 0.133474085 12577294.73 6501863.361 19476154.39 0.036467651 1.20E-11 10.91907156 -0.69419155 NSIS(ph)DDDT(ph)DS(ph)EDELR ddPTM_HeLa_A485_30min_R1 1 NSISDDDTDSEDELR 15 0 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 3 0 NS(0.048)IS(0.952)DDDT(1)DS(1)EDELR 100.28 0.00013611 0 46538 59073 48637 71280 86622 54462 79431 70660 53845 89910 TRUE FALSE FALSE 56890.21755 65981.07348 66629.85025 75173.84591 77997.60953 57313.54611 62459.91796 53330.52421 64651.1976 67497.09167 0.842854353 0.977539504 0.987151425 1.113734593 1.155569931 0.849126158 0.925371989 0.790115883 0.95783679 1 16.04253772 -6.296250608 24.97158988 0.892677512 1.017165348 0.248923653 0.09517627 839.3157918 602074.6899 0.034955412 0.030829247 5.06E-07 6.296250608 0.124487836 NSITEIS(ph)DNEDDLLEYHR ddPTM_HeLa_A485_30min_R1 1 NSITEISDNEDDLLEYHR 18 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 NSIT(0.002)EIS(0.998)DNEDDLLEYHR 163.18 3.68E-12 196750000 39975 42949 42662 61543 63965 38722 56218 53262 41540 72577 TRUE FALSE FALSE 48867.30084 47971.51194 58444.44911 64904.93825 57596.42001 40749.42404 44206.56504 40199.41099 49876.69697 54484.88958 0.896896391 0.880455339 1.072672617 1.191246578 1.057108135 0.747903214 0.811354586 0.737808433 0.915422558 1 15.73356856 -6.253686126 24.76981597 0.824164336 1.024417325 0.388119415 0.109954241 536.3241144 1713429.625 0.039080283 0.038368343 5.58E-07 6.253686126 0.200252989 NSITEIS(ph)DNEDDLLEYHR ddPTM_HeLa_A486_30min_R1 1 NSITEISDNEDDLLEYHR 18 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 NSITEIS(1)DNEDDLLEYHR 200.54 2.56E-25 189640000 78489 89711 58873 38389 95391 92769 106170 104250 82323 99716 TRUE FALSE FALSE 72987.32642 82601.97364 81670.20227 89371.53207 83426.17129 81324.10399 79605.14305 80514.55076 89458.82392 74746.46456 0.976465266 1.105095393 1.092629635 1.195662331 1.11612197 1.087999338 1.065002118 1.077168683 1.196830171 1 16.18971772 -4.260479688 6.011345883 1.107852775 0.972885464 0.321006341 0.05543651 0.153907895 27.04582159 0.013459002 0.084815338 5.49E-05 4.260479688 -0.134967311 NSITEIS(ph)DNEDDLLEYHRR ddPTM_HeLa_A485_30min_R1 3 NSITEISDNEDDLLEYHRR 19 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 NSITEIS(1)DNEDDLLEYHRR;NSITEIS(1)DNEDDLLEYHRR;NSITEIS(1)DNEDDLLEYHRR ;; 178.22 2.71E-14 370644000 106862 137169 121053 147414 186458 121449 201840 198990 114742 200810 TRUE FALSE FALSE 130633.0832 153209.7213 165835.5421 155466.8535 167893.5868 127807.8818 158715.2351 150187.3905 137769.6669 150751.7626 0.866544317 1.016304676 1.100057069 1.031277186 1.113708947 0.847803565 1.05282507 0.996256282 0.913884286 1 17.20181535 -6.238680513 24.97863165 0.967586773 1.029517513 0.131080663 0.080729224 1804.355948 1980343.854 0.026837678 0.026819119 5.77E-07 6.238680513 0.06193074 NSITEIS(ph)DNEDDLLEYHRR ddPTM_HeLa_A486_30min_R1 1 NSITEISDNEDDLLEYHRR 19 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 NSITEIS(1)DNEDDLLEYHRR 113.54 3.55E-05 115110000 40091 38010 32694 17594 48244 40854 52657 44052 34872 47940 TRUE FALSE FALSE 37280.82793 34997.94917 45353.99238 40959.72115 42192.78766 35813.84885 39481.66165 34022.32125 37894.73304 35935.51196 1.03743695 0.973909853 1.262093954 1.139811816 1.17412513 0.996614404 1.098680929 0.946760444 1.054520472 1 15.13312262 -6.272906312 24.87047103 1.02094813 1.11877493 0.269145536 0.080840929 1051.667866 2280941.604 0.029746196 0.026466067 5.33E-07 6.272906312 0.097826801 NSKPS(ph)PVDSNR ddPTM_HeLa_A486_30min_R1 2 NSKPSPVDSNR 11 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 NSKPS(0.992)PVDS(0.008)NR;NS(0.091)KPS(0.903)PVDS(0.006)NR ; 95.57 0.00097844 123484000 247900 205036 121437 137439 212600 236270 328780 260020 181296 335320 TRUE FALSE FALSE 230523.4902 188788.2006 168460.6586 319964.9378 185933.7256 207121.4096 246515.7665 200819.1222 197010.8833 251353.6894 0.917127935 0.751085855 0.67021359 1.272966944 0.739729447 0.824023749 0.980752529 0.798950366 0.783799449 1 17.93935934 NSKS(ph)PTEYHEPVYANPFYRPT(ph)TPQR ddPTM_HeLa_A486_30min_R1 1 NSKSPTEYHEPVYANPFYRPTTPQR 25 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 2 0 NS(0.432)KS(0.558)PT(0.009)EYHEPVYANPFY(0.003)RPT(0.53)T(0.467)PQR 101.44 0.00095621 222260000 111480 93096 72697 86148 110110 113910 150380 147170 86810 181600 TRUE FALSE FALSE 103665.8277 85718.73391 100847.2253 200556.8977 96298.97707 99856.94235 112753.3334 113662.6037 94334.7607 136126.178 0.76154219 0.629700585 0.740836383 1.473316159 0.70742438 0.73356164 0.828300149 0.834979762 0.692995 1 17.05458501 -13.98248247 0.012760756 1.887712314 2.57E-07 0.022362929 0.229250873 60055.20188 58.19093543 5210.797391 3545.911926 1.04E-14 13.98248247 -1.887712056 NSKS(ph)PTEYHEPVYANPFYRPTTPQR ddPTM_HeLa_A485_30min_R1 2 NSKSPTEYHEPVYANPFYRPTTPQR 25 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 NS(0.002)KS(0.499)PT(0.499)EYHEPVYANPFYRPTTPQR;NS(0.021)KS(0.782)PT(0.197)EYHEPVYANPFYRPTTPQR ; 251.13 2.19E-50 2880840000 437870 402560 270356 676230 573060 443890 746900 701970 317626 940580 TRUE FALSE FALSE 535272.6709 449635.8902 370371.9349 713170.7326 516004.1343 467131.394 587318.7134 529810.7569 381370.6248 706110.7161 0.758057708 0.636778171 0.524523883 1.009998455 0.730769442 0.661555452 0.831765756 0.750322499 0.540100321 1 19.42953489 -11.11626336 2.455992182 1.540649729 0.719921434 0.287027552 0.134158616 10858826.2 2471322.236 32873653.87 0.033308582 7.65E-12 11.11626336 -0.820728296 NSKS(ph)PTEYHEPVYANPFYRPTTPQR ddPTM_HeLa_A486_30min_R1 3 NSKSPTEYHEPVYANPFYRPTTPQR 25 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 NS(0.004)KS(0.949)PT(0.047)EYHEPVYANPFYRPTTPQR;NS(0.057)KS(0.907)PT(0.036)EYHEPVYANPFYRPTTPQR;NS(0.047)KS(0.851)PT(0.103)EYHEPVYANPFYRPTTPQR ;; 183.93 1.20E-20 3709670000 707060 571259 304878 454317 568088 673341 903560 820700 516961 1042910 TRUE FALSE FALSE 657498.7453 525990.3564 422934.9265 1057672.936 496833.1058 590271.0334 677479.7311 633844.5258 561771.5957 781758.5478 0.841050919 0.672829684 0.541004544 1.352940673 0.635532681 0.755055426 0.866609944 0.810793214 0.718599876 1 19.57636356 -11.54815714 2.044091903 3.633289256 0.800529919 0.077516518 0.207590184 17852746.71 927709.2052 218237828.7 0.051147261 2.83E-12 11.54815714 -2.832759337 NSKYEYDPDIS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 NSKYEYDPDISPPR 14 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 NSKYEYDPDIS(1)PPR;NSKYEYDPDIS(1)PPR;NSKYEYDPDIS(1)PPR;NSKYEYDPDIS(1)PPR ;;; 127.17 1.24E-05 1030910000 878110 1182460 1017310 1402440 2693540 1524670 2863730 3198050 1257210 2496290 TRUE FALSE FALSE 1073442.54 1320738.411 1393655.303 1479051.746 2425361.7 1604499.364 2251870.691 2413723.223 1509520.515 1874010.844 0.572804871 0.704765618 0.743675154 0.789243964 1.294209 0.856184674 1.201631623 1.287998536 0.805502551 1 20.83769787 -5.596222568 6.219383986 1.083422903 0.690725855 0.572566563 0.159219926 0.145442006 9.517900264 0.046075476 0.059817467 2.53E-06 5.596222568 -0.392697047 NSKYEYDPDIS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 NSKYEYDPDISPPR 14 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 NSKYEYDPDIS(1)PPR;NSKYEYDPDIS(1)PPR;NSKYEYDPDIS(1)PPR ;; 97.058 0.00043958 648460000 1082260 868570 685160 724030 1561060 1121860 1798450 1936730 784770 1540110 TRUE FALSE FALSE 1006399.163 799741.3499 950472.3012 1685578.43 1365257.298 983456.3194 1348458.788 1495778.858 852794.4955 1154456.432 0.871751532 0.692742773 0.823307208 1.460062402 1.182597508 0.851878246 1.168046494 1.295656394 0.73869786 1 20.1387823 -5.031766895 24.709305 1.110475617 0.776191493 0.327267866 0.199602201 585.0121588 455040.9475 0.053796252 0.093303244 9.29E-06 5.031766895 -0.334284124 NSLDASRPAGLS(ph)PTLTPGER ddPTM_HeLa_A486_30min_R1 1 NSLDASRPAGLSPTLTPGER 20 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 NSLDASRPAGLS(0.987)PT(0.011)LT(0.001)PGER 82.639 0.00079477 189940000 163350 166560 108550 74324 188350 153800 184450 179550 150060 252380 TRUE FALSE FALSE 151900.0085 153361.179 150583.4671 173030.0281 164725.3867 134825.7197 138298.6591 138670.3845 163067.3216 189182.4053 0.802928836 0.810652443 0.795969725 0.914620088 0.870722552 0.712675788 0.731033411 0.732998316 0.861958179 1 17.52941839 -6.223744325 24.95268284 0.786251713 0.839217951 0.001810947 0.085673525 1506.815748 997454.6442 0.027721918 0.02772138 5.97E-07 6.223744325 0.052966238 NSLEDNSWVFPS(ph)PPK ddPTM_HeLa_A485_30min_R1 1 NSLEDNSWVFPSPPK 15 0 Q9H6S1 Q9H6S1 AZI2 5-azacytidine-induced protein 2 1 0 NSLEDNSWVFPS(1)PPK 100.45 0.00034299 0 37036 30513 21451 72097 47028 25484 52997 39711 22188 81333 TRUE FALSE FALSE 45274.53043 34081.22992 29386.61755 76035.47655 42345.72719 26818.30283 41673.758 29971.81499 26640.92808 61058.17992 0.741498199 0.558176316 0.48128879 1.245295498 0.693530781 0.439225389 0.682525389 0.49087305 0.436320377 1 15.89789696 -6.010975366 24.95689118 0.580721496 0.75356668 0.069355409 0.242767295 1318.264657 2997608.361 0.078439912 0.083318091 9.75E-07 6.010975366 0.172845185 NSLEDNSWVFPS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 NSLEDNSWVFPSPPK 15 0 Q9H6S1 Q9H6S1 AZI2 5-azacytidine-induced protein 2 1 0 NSLEDNSWVFPS(1)PPK 99.451 0.00037233 0 49649 45206 17704 39809 35215 54154 69159 60005 36152 93622 TRUE FALSE FALSE 46168.86149 41623.71192 24559.46293 92677.36384 30798.00633 47473.03008 51854.68671 46343.1714 39285.68447 70178.44182 0.657878122 0.593112512 0.34995737 1.320595918 0.438852809 0.676461729 0.738897664 0.660361932 0.559797047 1 16.0987403 -11.04272439 2.546546149 1.424520238 0.669587801 0.142619233 0.245395526 64048625.39 26379416.44 158328210.9 0.058450197 9.06E-12 11.04272439 -0.754932436 NSLLAGGDDDTMSVIS(ph)GIS(ph)SR ddPTM_HeLa_A486_30min_R1 3 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 2 0 NSLLAGGDDDTMS(0.001)VIS(0.997)GIS(0.549)S(0.453)R;NSLLAGGDDDTMS(0.005)VIS(0.973)GIS(0.543)S(0.479)R;NSLLAGGDDDT(0.002)MS(0.01)VIS(0.957)GIS(0.55)S(0.481)R ;; 118.05 7.09E-05 145596000 486520 482943 345805 244433 539627 510858 642490 637860 451781 689851 TRUE FALSE FALSE 452417.4604 444672.8378 479709.957 569052.377 471941.9498 447833.534 481732.2064 492633.2024 490941.7408 517107.8194 0.87489967 0.859922865 0.927678791 1.100452083 0.912656765 0.866035123 0.931589484 0.952670186 0.949399182 1 18.9801056 -4.870015146 5.087616546 0.954385548 0.868254376 0.275272868 0.058128993 0.286547108 11.51839734 0.016347077 0.035756721 1.35E-05 4.870015146 -0.086131172 NSLLAGGDDDTMSVIS(ph)GISSR ddPTM_HeLa_A485_30min_R1 4 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDTMS(0.003)VIS(0.659)GIS(0.169)S(0.169)R;NSLLAGGDDDTMSVIS(0.994)GIS(0.003)S(0.003)R;NSLLAGGDDDTMS(0.001)VIS(0.995)GIS(0.002)S(0.002)R;NSLLAGGDDDTMSVIS(0.99)GIS(0.005)S(0.005)R ;;; 329.5 3.47E-114 604792000 194882 263360 223140 276585 368499 224148 357621 332580 189930 411712 TRUE FALSE FALSE 238232.8286 294157.6611 305688.7716 291694.1382 331809.9457 235884.0427 281212.3519 251014.2335 228047.2089 309079.7754 0.770781033 0.951720832 0.98902871 0.943750324 1.073541435 0.763181746 0.909837441 0.812134127 0.73782637 1 18.23761973 -6.278825002 24.92192131 0.836931921 0.948387061 0.207158162 0.098323057 1198.49885 1718017.369 0.033935604 0.029998086 5.26E-07 6.278825002 0.111455141 NSLLAGGDDDTMSVIS(ph)GISSR ddPTM_HeLa_A486_30min_R1 1 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDTMSVIS(0.601)GIS(0.199)S(0.199)R 175.86 2.94E-14 187830000 48257 38626 28643 23764 52196 48556 56744 55108 44125 69317 TRUE FALSE FALSE 44874.4335 35565.13509 39734.33669 55323.79297 45649.09097 42565.6544 42546.05102 42561.1114 47949.79053 51959.57202 0.863641323 0.68447706 0.764716397 1.064746895 0.878550173 0.819207179 0.818829897 0.819119745 0.92282882 1 15.66510193 -14 0.108050882 1.471703982 0.757890945 0.217753969 0.093019735 303.3857192 2.185943507 32.10458062 1.348360626 1.00E-14 14 -0.713813037 NSLLAGGDDDTMSVISGIS(ph)SR ddPTM_HeLa_A485_30min_R1 2 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDTMSVISGIS(0.5)S(0.5)R;NSLLAGGDDDTMSVISGIS(0.5)S(0.5)R ; 368.22 4.87E-142 307150000 113575 162658 136889 175213 200099 135208 202942 174653 129096 255060 TRUE FALSE FALSE 138839.3669 181679.4382 187529.9375 184784.4425 180176.441 142287.2818 159581.7838 131819.0779 155004.3831 191478.236 0.725092156 0.948825527 0.97937991 0.965041492 0.940976085 0.74309898 0.83341996 0.688428516 0.809514367 1 17.5468209 -6.251841247 24.76349688 0.796577121 0.920621807 0.17327585 0.101157742 832.2811147 2147313.187 0.032764723 0.032350535 5.60E-07 6.251841247 0.124044686 NSLLAGGDDDTMSVISGIS(ph)SR ddPTM_HeLa_A486_30min_R1 3 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDTMSVISGIS(0.5)S(0.5)R;NSLLAGGDDDT(0.043)MS(0.036)VIS(0.271)GIS(0.325)S(0.325)R;NSLLAGGDDDTMSVISGIS(0.5)S(0.5)R ;; 286.07 3.41E-73 429819000 208764 178260 128893 57182.3 206687 167633 213200 204219 168211 262632 TRUE FALSE FALSE 194130.7217 164134.0284 178803.8215 133123.2842 180762.3892 146952.1448 159855.105 157722.7918 182791.6649 196867.2378 0.986099688 0.833729524 0.908245697 0.676208422 0.918194369 0.746453023 0.811994453 0.801163228 0.928502208 1 17.58686352 -7.959609091 4.0605173 0.999258268 0.831733993 0.291765195 0.083745586 0.218195421 7.959790359 0.077470493 0.020374627 1.10E-08 7.959609091 -0.167524275 NSLLAGGDDDTMSVISGISS(ph)R ddPTM_HeLa_A486_30min_R1 1 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDTMSVISGIS(0.207)S(0.793)R 366.88 5.35E-142 126410000 100250 71522 40901 23670 88498 73404 90798 85776 64057 119960 TRUE FALSE FALSE 93222.99269 65854.33624 56738.96257 55104.95622 77397.75563 64348.1608 68079.38004 66246.67728 69609.51234 89921.23519 1.036718329 0.732355779 0.630985133 0.612813604 0.860728341 0.715605837 0.757100143 0.736718942 0.774116505 1 16.45637423 -8.196839105 5.126565925 0.999999523 0.752071774 0.282080287 0.11351955 5.559632071 144.182815 0.110236598 0.02870356 6.36E-09 8.196839105 -0.247927749 NSLLASYIHYVFR ddPTM_HeLa_A485_30min_R1 2 NSLLASYIHYVFR 13 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 0 0 ; ; 186.56 2.70E-10 22128000 24909 27627 27880 27650 46350 20521.1 38015 30523 21762.5 46500 FALSE FALSE TRUE 30449.92111 30857.73733 38193.97218 29160.44949 41735.23126 21595.55306 29892.7847 23037.18639 26130.03413 34908.40577 0.872280485 0.88396295 1.094119635 0.835341771 1.195563943 0.618634755 0.856320535 0.659932354 0.748531294 1 15.09128685 -6.276193558 24.99717259 0.760406867 0.969846165 0.330816264 0.140825663 890.9798104 1509532.246 0.046515409 0.041187292 5.29E-07 6.276193558 0.209439298 NSLLASYIHYVFR ddPTM_HeLa_A486_30min_R1 2 NSLLASYIHYVFR 13 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 0 0 ; ; 222.29 1.11E-21 36471000 36699 36384 29067 14038.1 44109 36133 55718 43255 33182 42294 FALSE FALSE TRUE 34126.58961 33500.79933 40322.52084 32681.40625 38576.43792 31675.27783 41776.76708 33406.78075 36058.24248 31703.30711 1.076436269 1.05669731 1.271871124 1.030851644 1.216795389 0.999115888 1.317741614 1.053731733 1.137365334 1 14.95234572 -8.663199807 1.386790878 1.000030579 1.131848504 0.124790464 0.102027806 10.01358828 18.86866219 0.091360116 0.026613152 2.17E-09 8.663199807 0.131817925 NSNLVGAAHEELQQSR ddPTM_HeLa_A485_30min_R1 1 NSNLVGAAHEELQQSR 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 109.72 0.0003051 25109000 17433 21048 17941 20171 29629 17574 26149 26271 16322 27165 FALSE FALSE TRUE 21310.91071 23509.38051 24578.12249 21272.89065 26679.03273 18494.14747 20562.05253 19827.99606 19597.67569 20393.26543 1.044997466 1.152801182 1.205207796 1.043133123 1.308227601 0.906875239 1.00827661 0.972281566 0.960987624 1 14.31580518 -6.282650215 24.99958211 0.970363826 1.148013551 0.589963325 0.075506929 571.8849664 674034.592 0.025201024 0.022244716 5.22E-07 6.282650215 0.177649724 NSNLVGAAHEELQQSR ddPTM_HeLa_A486_30min_R1 1 NSNLVGAAHEELQQSR 16 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 89.507 0.0037743 201680000 120270 166000 122550 31642 197980 114240 118340 130920 141260 77004 FALSE FALSE TRUE 111839.6941 152845.5554 170004.642 73664.1751 173147.5023 100146.2303 88730.08033 101112.374 153504.5305 57721.69719 1.937567666 2.647974035 2.945246767 1.276195585 2.999695275 1.73498416 1.537204979 1.751722123 2.659390455 1 15.8168261 -6.384135278 17.82054409 1.77096538 2.351556725 0.210781169 0.602357286 3.96555157 559.3775954 0.205959051 0.18163691 4.13E-07 6.384135278 0.580591345 NSNPVIAELSQAINSGTLLSKPS(ph)PPLPPK ddPTM_HeLa_A486_30min_R1 1 NSNPVIAELSQAINSGTLLSKPSPPLPPK 29 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 NSNPVIAELS(0.003)QAINS(0.012)GT(0.012)LLS(0.012)KPS(0.962)PPLPPK 59.837 0.0089718 50388000 32470 27368 13915 21310 28242 39900 50006 44483 31196 60038 TRUE FALSE FALSE 30194.02068 25199.26001 19303.26066 49610.75695 24699.62501 34977.54367 37493.96989 34355.19196 33900.0944 45004.09402 0.670917198 0.559932614 0.428922325 1.102360975 0.548830624 0.777208039 0.833123535 0.763379259 0.7532669 1 15.45776863 -4.654372942 0.079399462 1.278457288 9.21E-13 0.278825271 0.165554859 109.8918847 1.593360768 7.460307341 20.06560846 2.22E-05 4.654372942 -1.278457288 NSNPVIAELSQAINSGTLLSKPS(ph)PPLPPKR ddPTM_HeLa_A486_30min_R1 1 NSNPVIAELSQAINSGTLLSKPSPPLPPKR 30 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 NSNPVIAELSQAINSGTLLSKPS(1)PPLPPKR 279.78 8.35E-78 999160000 166680 121540 48401 96351 111160 155330 225370 203690 115820 280080 TRUE FALSE FALSE 154996.5927 111908.7278 67143.16342 224309.9973 97217.27627 136166.9639 168980.0423 157314.2335 125859.3709 209946.145 0.738268344 0.533035402 0.319811366 1.068416842 0.463058163 0.648580444 0.80487328 0.749307559 0.599484077 1 17.67965977 -14 0.150933252 2.227209873 0.552749318 0.224838992 0.193168034 201.6870875 1.800440714 74.13850788 0.950314564 1.00E-14 14 -1.674460555 NSNS(ph)NS(ph)DS(ph)DEDEQR ddPTM_HeLa_A485_30min_R1 2 NSNSNSDSDEDEQR 14 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 3 0 NSNS(1)NS(1)DS(1)DEDEQR;NS(0.001)NS(0.999)NS(1)DS(1)DEDEQR ; 282.26 1.48E-68 160340000 216162 274964 211241 409770 328442 250503 418960 411930 261349 564170 TRUE FALSE FALSE 264246.4911 307118.6479 289387.8364 432154.6975 295741.1613 263618.9497 329445.7734 310903.5216 313799.3471 423532.8018 0.623910332 0.725135448 0.683271367 1.020357091 0.698272153 0.622428649 0.77785185 0.734071884 0.740909195 1 18.69211418 -11.53206061 1.258462149 2.217880501 0.739405987 0.357192132 0.106071638 75313.88674 5313.713099 257863.0998 0.031210047 2.94E-12 11.53206061 -1.478474515 NSNS(ph)NS(ph)DS(ph)DEDEQR ddPTM_HeLa_A486_30min_R1 2 NSNSNSDSDEDEQR 14 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 3 0 NS(0.002)NS(0.998)NS(1)DS(1)DEDEQR;NS(0.057)NS(0.943)NS(1)DS(1)DEDEQR ; 207.76 3.55E-22 51558000 113544 116366 86629 78485 118465 160571 157718 132003 136643 192102 TRUE FALSE FALSE 105585.1519 107144.7344 120174.0688 182717.0464 103606.0151 140761.3826 118255.2882 101948.7985 148487.3253 143998.4088 0.733238324 0.744068877 0.834551366 1.268882399 0.719494166 0.977520403 0.821226354 0.707985591 1.031173375 1 17.13569334 -5.000367417 24.87766198 0.919557951 0.751317623 0.199447364 0.154645735 22.27830978 1508961.117 0.040486651 0.08281338 9.99E-06 5.000367417 -0.168240328 NSNS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_A485_30min_R1 5 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 NSNS(1)PPS(0.988)PS(0.012)SMNQR;NS(0.015)NS(0.985)PPS(0.979)PS(0.019)S(0.002)MNQR;NS(0.075)NS(0.925)PPS(0.954)PS(0.038)S(0.008)MNQR;NSNS(1)PPS(0.994)PS(0.006)SMNQR;NS(0.064)NS(0.936)PPS(0.992)PS(0.006)S(0.001)MNQR ;;;; 258.17 2.58E-41 1216389000 855399 955531 906441 1228502 1290660 851275 1347012 1197531 828161 1606830 TRUE FALSE FALSE 1045679.556 1067272.038 1241771.246 1295611.954 1162157.359 895846.4427 1059211.882 903834.6446 994365.3164 1206276.853 0.866865309 0.884765414 1.029424749 1.074058539 0.963425068 0.742654094 0.878083568 0.74927629 0.824325953 1 20.20212963 -6.201605935 10.6421581 0.825686133 0.96922645 0.3269108 0.088386918 0.829786871 145.5608317 0.02962376 0.029618705 6.29E-07 6.201605935 0.143540316 NSNS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_A486_30min_R1 5 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 NSNS(1)PPS(0.996)PS(0.004)SMNQR;NSNS(1)PPS(1)PSSMNQR;NS(0.002)NS(0.998)PPS(0.987)PS(0.013)SMNQR;NSNS(1)PPS(1)PSSMNQR;NSNS(1)PPS(1)PSSMNQR ;;;; 349.61 1.22E-94 1270734000 1668888 1625580 1068046 597779 1615215 1652373 1884107 1785460 1490348 2110660 TRUE FALSE FALSE 1551907.569 1496763.121 1481622.014 1391659.722 1412619.673 1448520.019 1412683.501 1378949.734 1619532.565 1582136.998 0.980893293 0.946038884 0.93646885 0.879607597 0.89285547 0.915546518 0.892895813 0.871574166 1.023636112 1 20.5934431 -7.772534611 24.99998762 1.011818132 0.91370183 0.598481785 0.031884288 175.6371116 395735.8554 0.032061639 0.008590384 1.69E-08 7.772534611 -0.098116303 NSNS(ph)PPSPSSMNQR ddPTM_HeLa_A485_30min_R1 1 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNS(1)PPSPSSMNQR 138.19 5.71E-05 83180000 47019 63217 56901 66674 78627 51053 73066 77477 52905 99641 TRUE FALSE FALSE 57478.21434 70609.67824 77951.04775 70316.23179 70798.6198 53726.05614 57454.85221 58475.64427 63522.54823 74802.33246 0.768401365 0.943950221 1.042093812 0.940027262 0.946476099 0.718240386 0.768089046 0.781735574 0.849205448 1 16.19079564 -6.236988837 24.56555304 0.806352246 0.936050994 0.224312833 0.094184912 780.2178757 783888.1484 0.030841812 0.030826257 5.79E-07 6.236988837 0.129698748 NSNS(ph)PPSPSSMNQR ddPTM_HeLa_A486_30min_R1 1 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNS(1)PPSPSSMNQR 145.69 8.14E-07 118370000 286590 287310 187540 99975 272230 286570 328590 307190 252920 354790 TRUE FALSE FALSE 266501.521 264542.5092 260160.5105 232746.8525 238084.375 251215.907 246373.3065 237249.5429 274843.3092 265948.2747 1.002080278 0.99471414 0.978237256 0.875158347 0.895228124 0.944604387 0.926395581 0.892089047 1.033446483 1 18.02078615 -5.019985858 21.86111627 0.931249159 0.995416912 0.217377017 0.046254722 187.7470309 205366.6462 0.012208787 0.021611319 9.55E-06 5.019985858 0.064167753 NSNSNS(ph)DS(ph)DEDEQR ddPTM_HeLa_A485_30min_R1 1 NSNSNSDSDEDEQR 14 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 NSNSNS(1)DS(1)DEDEQR 328.55 1.98E-101 0 259570 321080 164650 496050 227860 273390 371070 405670 285280 576240 TRUE FALSE FALSE 317310.451 358627.513 225560.8867 523147.9554 205173.4583 287704.2777 291787.8631 306178.7964 342533.0793 432593.9729 0.733506408 0.829016434 0.521414769 1.209327888 0.474286447 0.665067698 0.674507463 0.707774069 0.791811955 1 18.72265404 -8.143779181 3.478255161 0.999944148 0.727713241 0.15889486 0.188750792 1.29845854 27.67111188 0.173954509 0.045989583 7.18E-09 8.143779181 -0.272230907 NSNSPPS(ph)PSSMNQR ddPTM_HeLa_A485_30min_R1 9 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNSPPS(1)PSSMNQR;NSNSPPS(0.996)PS(0.003)S(0.001)MNQR;NS(0.003)NS(0.03)PPS(0.895)PS(0.058)S(0.013)MNQR;NSNSPPS(0.996)PS(0.004)SMNQR;NSNSPPS(1)PSSMNQR;NSNS(0.008)PPS(0.973)PS(0.019)S(0.001)MNQR;NSNS(0.001)PPS(0.991)PS(0.008)SMNQR;NSNS(0.001)PPS(0.972)PS(0.02)S(0.007)MNQR;NSNS(0.002)PPS(0.964)PS(0.014)S(0.02)MNQR ;;;;;;;; 390.77 2.50E-125 4338760000 1020046 1238495 1197246 1501269 1839617 1100673 1835128 1577419 1139079 2112117 TRUE FALSE FALSE 1246951.714 1383326.217 1640157.117 1583279.524 1656458.272 1158302.536 1443037.911 1190554.517 1367681.707 1585605.103 0.786420094 0.872427955 1.03440454 0.998533318 1.044685256 0.730511358 0.910086571 0.750851845 0.862561368 1 20.59660208 -6.25689095 24.99254677 0.838935742 0.950821068 0.180323799 0.101154951 625.6418007 3437758.67 0.034390332 0.033307973 5.53E-07 6.25689095 0.111885326 NSNSPPS(ph)PSSMNQR ddPTM_HeLa_A486_30min_R1 5 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNSPPS(0.997)PS(0.002)S(0.001)MNQR;NSNSPPS(0.996)PS(0.004)SMNQR;NSNSPPS(0.996)PS(0.004)SMNQR;NSNSPPS(1)PSSMNQR;NSNSPPS(1)PSSMNQR ;;;; 270.78 1.67E-43 4331264000 884204 841087 543554 319735 830197 845422 1098556 997194 788009 1104351 TRUE FALSE FALSE 822225.8656 774436.2029 754032.6657 744359.2385 726065.951 741122.4293 823685.6695 770154.6948 856314.2546 827814.3215 0.993249143 0.935519213 0.910871733 0.89918623 0.877087932 0.895276163 0.995012587 0.93034715 1.03442793 1 19.65894768 -7.32989277 1.338011785 1.008710239 0.918846052 0.420926912 0.039143917 0.458561943 1.442613238 0.034753997 0.012790029 4.68E-08 7.32989277 -0.089864187 NSPAS(ph)PLKELSGK ddPTM_HeLa_A485_30min_R1 1 NSPASPLKELSGK 13 1 O43572;E7EMD6 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 NSPAS(1)PLKELSGK 102.59 0.00029003 226440000 133340 97796 47689 226920 142070 108230 225130 205240 76120 328120 TRUE FALSE FALSE 163001.023 109232.3915 65331.1456 239316.065 127925.012 113896.7554 177029.1364 154904.5682 91396.58579 246325.7226 0.661729604 0.443446954 0.265222588 0.971543136 0.519332738 0.462382711 0.71867905 0.628860708 0.371039552 1 17.91020776 -11.15567404 2.413058001 2.038310642 0.562828794 0.327622796 0.188961432 17399710.55 3587581.201 99072957.2 0.047470508 6.99E-12 11.15567404 -1.475481848 NSPAT(ph)LFEVPDTW ddPTM_HeLa_A485_30min_R1 1 NSPATLFEVPDTW 13 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;O95453-4 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 0 NS(0.346)PAT(0.654)LFEVPDTW 99.653 0.0040521 9296800 14785 14623 13210 24703 20729 10293 17280 11463 11657 29094 TRUE FALSE FALSE 18073.87224 16333.03265 18096.92871 26052.46234 18665.14798 10831.92556 13587.98684 8651.681277 13996.45298 21841.40124 0.827505161 0.747801502 0.828560792 1.192801783 0.854576489 0.495935469 0.622120655 0.396113838 0.640822117 1 14.41477779 -6.178151837 6.167095327 0.593334169 0.898635746 0.32408807 0.183582256 0.250748443 15.05786276 0.060609142 0.060577238 6.64E-07 6.178151837 0.305301577 NSPFQIPPPS(ph)PDSK ddPTM_HeLa_A485_30min_R1 3 NSPFQIPPPSPDSK 14 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 NSPFQIPPPS(0.999)PDS(0.001)K;NSPFQIPPPS(0.999)PDS(0.001)K;NSPFQIPPPS(1)PDSK ;; 140.81 1.21E-06 289120000 478120 434914 327625 919350 661340 446753 904080 739280 325947 1184940 TRUE FALSE FALSE 584476.1445 485773.4091 448827.1211 969571.7626 595494.6675 470144.2963 710915.9223 557970.4209 391361.5731 889556.2652 0.657042356 0.546085085 0.504551695 1.0899499 0.669428895 0.528515525 0.799180389 0.627245788 0.439951455 1 19.76272633 -10.72418117 2.890648445 1.054613602 0.657376781 0.261604536 0.175471182 135398750.3 127160837.3 53648427.45 0.044372862 1.89E-11 10.72418117 -0.397236821 NSPFQIPPPS(ph)PDSK ddPTM_HeLa_A486_30min_R1 3 NSPFQIPPPSPDSK 14 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 NSPFQIPPPS(0.999)PDS(0.001)K;NSPFQIPPPS(0.998)PDS(0.002)K;NSPFQIPPPS(1)PDSK ;; 145.55 8.51E-08 529437000 1106030 880200 388470 621760 817680 1104060 1506270 1310110 770990 1812020 TRUE FALSE FALSE 1028503.009 810449.7464 538895.9876 1447488.702 715118.9498 967852.3025 1129385.314 1011826.553 837820.034 1358278.398 0.757210753 0.596674252 0.396749288 1.065678954 0.526489232 0.712558121 0.831482939 0.744933111 0.616824972 1 20.37334778 -14 0.18912846 2.281319658 0.639693381 0.217126452 0.172465846 211.8006374 2.068680069 102.4963103 0.468226874 1.00E-14 14 -1.641626277 NSPGLGSLVS(ph)PHGPHMPPAASIPPPPGLGGVK ddPTM_HeLa_A486_30min_R1 1 NSPGLGSLVSPHGPHMPPAASIPPPPGLGGVK 32 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 0 NS(0.299)PGLGS(0.302)LVS(0.391)PHGPHMPPAAS(0.008)IPPPPGLGGVK 103.73 9.01E-05 515370000 395730 351860 202660 35717 333710 326920 513390 422170 330480 365140 TRUE FALSE FALSE 367991.3706 323977.3321 281135.3794 83150.98104 291852.9801 286587.9343 384934.3919 326051.1069 359126.2725 273706.5673 1.344474026 1.183666637 1.027141519 0.303796076 1.066298785 1.047062689 1.406376163 1.191243272 1.312084967 1 18.06227053 -6.579558716 6.107158345 1.243626342 0.96933852 0.149965815 0.271275969 0.380232121 29.35708137 0.11167192 0.086384969 2.63E-07 6.579558716 -0.274287822 NSPLDCGSAS(ph)PNK ddPTM_HeLa_A486_30min_R1 2 NSPLDCGSASPNK 13 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 NSPLDCGSAS(1)PNK;NSPLDCGS(0.001)AS(0.999)PNK ; 205.66 1.24E-21 251760000 414330 410100 161338 261980 295120 563170 699910 567160 365820 836920 TRUE FALSE FALSE 385287.6066 377602.1824 223812.3944 609902.6797 258103.2977 493691.8113 524785.1151 438030.049 397529.5721 627349.7846 0.614151174 0.601900553 0.356758542 0.972189191 0.411418485 0.786948244 0.83651119 0.698223001 0.633664954 1 19.25891053 -13.99999991 0.086408835 2.094263312 0.361852924 0.301178112 0.169679385 280.8347987 1.694775262 57.4518519 4.454245637 1.00E-14 13.99999991 -1.732410389 NSPLDELEEGEIRS(ph)DSETSKPQESFEK ddPTM_HeLa_A486_30min_R1 1 NSPLDELEEGEIRSDSETSKPQESFEK 27 2 A0A087WTW5;Q9UKL3 A0A087WTW5 CASP8AP2 CASP8-associated protein 2 1 0 NS(0.003)PLDELEEGEIRS(0.961)DS(0.025)ET(0.008)S(0.003)KPQESFEK 57.811 0.01197 102100000 26290 23499 14290 14801 27852 30828 43307 28675 17495 46554 TRUE FALSE FALSE 24447.20676 21636.85366 19823.4707 34457.476 24358.54245 27024.7548 32471.13055 22146.32847 19011.48069 34896.57538 0.700561774 0.620027995 0.568063499 0.987417121 0.698021 0.774424267 0.930496193 0.634627559 0.544795026 1 15.09079784 -5.195855151 24.99981266 0.781124157 0.628598705 0.215193227 0.143511689 340.0587227 129624.5608 0.039012705 0.067571978 6.37E-06 5.195855151 -0.152525451 NSPMAQT(ph)PPCHLPNIPGVTSPGTLIEDSK ddPTM_HeLa_A486_30min_R1 1 NSPMAQTPPCHLPNIPGVTSPGTLIEDSK 29 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 NS(0.003)PMAQT(0.997)PPCHLPNIPGVTSPGTLIEDSK 89.645 0.0021405 81248000 118520 100640 34514 52418 61502 121250 135590 121370 86136 187080 TRUE FALSE FALSE 110212.36 92664.91988 47878.74512 122031.7531 53787.84568 106291.4078 101663.9479 93736.70049 93602.33783 140233.9503 0.785917817 0.660788059 0.341420498 0.870201209 0.383557944 0.757957738 0.724959595 0.668430863 0.667472731 1 17.09747614 -10.22498729 0.353751143 1.201103942 0.61966186 0.30970765 0.157793499 21.6519851 1.813868821 4.278906687 0.122237765 5.96E-11 10.22498729 -0.581442082 NSPMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_HeLa_A485_30min_R1 1 NSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 43 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 NS(0.02)PMAQT(0.98)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 159.34 1.12E-11 247490000 69685 71729 53887 133850 139230 82869 170400 131380 73576 192930 TRUE FALSE FALSE 85186.18784 80117.08259 73822.04373 141161.8866 125367.7723 87207.8927 133992.648 99158.849 88342.02832 144836.1016 0.588155763 0.553156856 0.509693667 0.974631912 0.865583725 0.602114333 0.925132936 0.684627989 0.609944809 1 17.14406173 -5.238809935 24.96722092 0.794315262 0.550617538 0.43136378 0.135302654 803.3205685 886308.0233 0.036686961 0.063486217 5.77E-06 5.238809935 -0.243697725 NSPMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_HeLa_A486_30min_R1 2 NSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 43 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 NS(0.013)PMAQT(0.987)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR;NS(0.096)PMAQT(0.904)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ; 154.9 9.63E-11 1023540000 384880 294830 178963 184375 378330 420120 616430 560350 298480 594070 TRUE FALSE FALSE 357901.8995 271466.597 248262.2664 429234.3178 330876.3236 368289.8659 462192.6941 432770.5374 324352.4867 445311.0053 0.803712227 0.609611247 0.557503101 0.963897844 0.74302301 0.827039668 1.037909885 0.971838855 0.728372941 1 18.76445374 -5.264688217 24.99928404 0.89150242 0.652209094 0.47684251 0.114652406 247.1384958 1901695.284 0.032641928 0.050762246 5.44E-06 5.264688217 -0.239293326 NSPNNISGISNPPGT(ph)PR ddPTM_HeLa_A485_30min_R1 4 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR ;;; 314.38 1.88E-78 1711300000 547090 638190 551250 728430 811110 521623 827150 682030 405021 880890 TRUE FALSE FALSE 668788.2831 712820.769 755180.3144 768222.2864 730353.0404 548934.3737 650422.6453 514761.0731 486304.9996 661300.3346 1.011323068 1.07790777 1.141962698 1.161684406 1.104419584 0.830083315 0.98355106 0.778407399 0.735376915 1 19.33494611 -6.257301878 24.60146759 0.859013403 1.104080427 0.654596481 0.084881946 177.705788 1056635.001 0.02922172 0.028198136 5.53E-07 6.257301878 0.245067025 NSPNNISGISNPPGT(ph)PR ddPTM_HeLa_A486_30min_R1 4 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR ;;; 357.65 6.45E-105 1139810000 657990 626110 381307 258657 594500 570450 738880 669090 507935 795270 TRUE FALSE FALSE 611868.2989 576494.7633 528959.2822 602166.5678 519932.2665 500073.6789 554004.4089 516752.8131 551963.2148 596129.2157 1.026402134 0.967063429 0.887323198 1.01012759 0.872180482 0.838867926 0.929336114 0.866846985 0.925912034 1 19.18526555 -3.259297247 0.755966532 0.905232497 1.474716654 0.28029261 0.053253855 12.54789258 1.765466502 0.019631555 8.592941161 0.000550431 3.259297247 0.569484157 NSPNNMSLSNQPGT(ph)PR ddPTM_HeLa_A486_30min_R1 1 NSPNNMSLSNQPGTPR 16 0 H0Y9V4;A0A087X159;P81877-4;P81877-5;P81877-3;P81877 H0Y9V4 SSBP2 Single-stranded DNA-binding protein 2 1 0 NSPNNMSLS(0.001)NQPGT(0.999)PR 128.59 8.31E-07 0 50836 54564 62802 18276 64705 43147 56600 60096 42613 60658 TRUE FALSE FALSE 47272.65892 50240.14992 87120.6163 42547.45162 56589.09555 37823.96183 42438.08135 46413.45269 46306.72915 45468.84198 1.039671495 1.10493577 1.916050915 0.93574962 1.244568656 0.831865519 0.933344231 1.020774901 1.018427722 1 15.47259064 -6.234294125 16.76643388 0.960461448 1.259985927 0.244888041 0.251833383 19.14591958 11824.22657 0.084519593 0.084362992 5.83E-07 6.234294125 0.299524479 NSPQSS(ph)PTSTPK ddPTM_HeLa_A486_30min_R1 2 NSPQSSPTSTPK 12 0 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 0 NSPQS(0.062)S(0.875)PT(0.062)S(0.002)TPK;NSPQS(0.001)S(0.935)PT(0.063)S(0.002)TPK ; 179.46 8.72E-13 366560000 816820 664970 313670 373090 581510 777680 982460 854580 596390 1143170 TRUE FALSE FALSE 759565.1361 612275.3554 435131.4244 868572.3749 508571.5934 681737.7485 736638.1166 660010.7894 648085.5654 856912.7912 0.886397244 0.714513031 0.507789624 1.0136065 0.593492825 0.795574247 0.859641873 0.770219322 0.756302826 1 19.70878886 -14 0.237341844 2.338910448 0.738593624 0.209918098 0.135899245 259.4469384 2.592897594 167.2208285 0.21374511 1.00E-14 14 -1.600316825 NSPS(ph)AASTSSNDSK ddPTM_HeLa_A486_30min_R1 1 NSPSAASTSSNDSK 14 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 NS(0.218)PS(0.779)AAS(0.002)T(0.001)SSNDSK 118.2 0.00012333 74088000 103070 71498 32588 42969 51891 119970 121990 83827 94476 164720 TRUE FALSE FALSE 95845.32525 65832.23809 45206.94634 100034.0035 45382.34692 105169.3212 91466.81172 64741.42203 102665.2557 123473.0399 0.776244963 0.533170951 0.366128075 0.810168792 0.367548632 0.85175939 0.740783671 0.524336504 0.83147913 1 16.91383654 -8.758793632 0.356555225 1.067230127 0.571155885 0.32530471 0.16966996 4.280565653 0.904768316 0.619109722 0.149997405 1.74E-09 8.758793632 -0.496074242 NSPSLQPPHPGSS(ph)TPTLASR ddPTM_HeLa_A486_30min_R1 3 NSPSLQPPHPGSSTPTLASR 20 0 Q8TER5-4;Q8TER5;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 NSPSLQPPHPGS(0.136)S(0.484)T(0.371)PT(0.008)LASR;NSPSLQPPHPGS(0.067)S(0.466)T(0.466)PTLASR;NSPSLQPPHPGS(0.108)S(0.446)T(0.446)PTLASR ;; 154.69 5.52E-10 679090000 521260 429270 295750 156281 469510 416930 606680 590900 382674 628950 TRUE FALSE FALSE 484722.3658 395253.0818 410272.3205 363830.066 410619.6778 365493.4156 454882.2472 456364.9693 415844.4904 471456.8262 1.028137337 0.838365381 0.870222463 0.771714494 0.870959237 0.7752426 0.964843909 0.967988889 0.882041509 1 18.84676614 -6.790960589 24.99984816 0.95105105 0.855235701 0.292563558 0.071875985 274.9920657 232872.8043 0.029762366 0.02006915 1.62E-07 6.790960589 -0.095815349 NSPT(ph)PAT(ph)STESLSPLHNVALR ddPTM_HeLa_A486_30min_R1 1 NSPTPATSTESLSPLHNVALR 21 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 2 0 NS(0.012)PT(0.985)PAT(0.485)S(0.404)T(0.112)ES(0.003)LSPLHNVALR 80.031 0.0019744 143230000 95105 87531 60999 25997 88071 79940 105590 96111 75496 82578 TRUE FALSE FALSE 88438.63062 80594.72478 84619.44641 60522.32982 77024.31395 70077.81557 79170.26518 74228.62339 82040.05407 61899.93131 1.428735521 1.302016385 1.367036192 0.977744701 1.244336017 1.132114594 1.279004088 1.199171337 1.325365834 1 15.91765019 -5.130719544 21.0422046 1.179693595 1.359596385 0.410315044 0.109148422 4.874606913 784.2820025 0.028416051 0.049218217 7.40E-06 5.130719544 0.17990279 NSPT(ph)PATS(ph)TESLSPLHNVALR ddPTM_HeLa_A485_30min_R1 2 NSPTPATSTESLSPLHNVALR 21 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 2 0 NS(0.053)PT(0.888)PAT(0.376)S(0.5)T(0.149)ES(0.032)LS(0.002)PLHNVALR;NS(0.108)PT(0.887)PAT(0.173)S(0.655)T(0.17)ES(0.005)LS(0.001)PLHNVALR ; 83.362 0.0025737 104910000 91873 122686 108658 110118 158264 98963 150506 147113 95973 162448 TRUE FALSE FALSE 112309.8319 137033.0605 148855.1158 116133.4675 142506.6805 104144.5497 118349.1636 111033.3061 115233.9008 121952.7032 0.920929417 1.123657425 1.220597099 0.952282848 1.168540563 0.853974917 0.970451334 0.910462033 0.94490649 1 16.89596221 -6.263594834 24.99992555 0.932518607 1.080808857 0.372082898 0.091627334 204.1638338 2367972.225 0.030644164 0.028354636 5.45E-07 6.263594834 0.14829025 NSPTFKS(ph)FEEK ddPTM_HeLa_A485_30min_R1 3 NSPTFKSFEEK 11 1 H0YC42;P55327-2;P55327;P55327-3;E5RK35;P55327-4;P55327-7;P55327-5;P55327-6 H0YC42 TPD52 Tumor protein D52 1 0 NSPT(0.003)FKS(0.997)FEEK;NSPT(0.01)FKS(0.99)FEEK;NSPTFKS(1)FEEK ;; 166.04 2.57E-08 1518490000 929601 677338 335830 2190970 1409823 1025739 2960270 3331880 1448067 5728860 TRUE FALSE FALSE 1136387.535 756546.787 460067.4921 2310657.143 1269456.072 1079445.108 2327784.131 2514731.206 1738680.764 4300760.634 0.264229431 0.175909996 0.106973517 0.537267088 0.295170129 0.250989348 0.541249404 0.584717779 0.404272851 1 22.03616041 -11.82607829 0.129566787 2.264181691 2.93E-15 0.759657459 0.121879053 34.91616285 0.503489774 13.45008526 1.106554645 1.49E-12 11.82607829 -2.264181691 NSPTFKS(ph)FEEK ddPTM_HeLa_A486_30min_R1 4 NSPTFKSFEEK 11 1 H0YC42;P55327-2;P55327;P55327-3;E5RK35;P55327-4;P55327-7;P55327-5;P55327-6 H0YC42 TPD52 Tumor protein D52 1 0 NS(0.004)PT(0.153)FKS(0.842)FEEK;NSPT(0.138)FKS(0.862)FEEK;NSPTFKS(1)FEEK;NSPTFKS(1)FEEK ;;; 159.18 5.96E-08 2693520000 978310 766858 203886 826471 554802 1688780 3029890 2966640 721666 3322040 TRUE FALSE FALSE 909735.521 706089.3792 282836.1195 1924066.256 485213.5598 1480435.494 2271779.475 2291200.833 784220.5899 2490179.561 0.365329286 0.283549584 0.113580612 0.772661653 0.194850832 0.594509535 0.912295447 0.920094627 0.314925318 1 21.24781834 -6.499960179 5.349247601 0.778725337 0.355072657 0.433504337 0.237911685 0.181552036 15.51263208 0.086407226 0.072169768 3.16E-07 6.499960179 -0.423652679 NSPTFKS(ph)FEEKVENLK ddPTM_HeLa_A485_30min_R1 1 NSPTFKSFEEKVENLK 16 2 H0YC42;P55327-2;P55327;P55327-3;E5RK35;P55327-4;P55327-7;P55327-5;P55327-6 H0YC42 TPD52 Tumor protein D52 1 0 NSPT(0.009)FKS(0.991)FEEKVENLK 77.287 0.0024093 418780000 44409 27118 24757 149180 165900 82456 324340 441100 97382 516170 TRUE FALSE FALSE 54287.62884 30289.2142 33915.64452 157329.3257 149382.4135 86773.26866 255042.1094 332919.5334 116925.6742 387498.3184 0.140097715 0.078166053 0.087524624 0.406012925 0.385504675 0.223931988 0.658176042 0.859150911 0.301744985 1 18.56383052 -6.904297874 0.316770789 0.991146748 4.67E-18 0.665510615 0.177806183 0.992842859 0.284906713 0.265814951 0.354009867 1.25E-07 6.904297874 -0.991146748 NSPTFKS(ph)FEEKVENLK ddPTM_HeLa_A486_30min_R1 2 NSPTFKSFEEKVENLK 16 2 H0YC42;P55327-2;P55327;P55327-3;E5RK35;P55327-4;P55327-7;P55327-5;P55327-6 H0YC42 TPD52 Tumor protein D52 1 0 NSPT(0.005)FKS(0.994)FEEKVENLK;NSPTFKS(1)FEEKVENLK ; 150.91 2.13E-08 1324970000 253870 249690 76066 631190 362930 820540 1872250 2087080 271060 1262850 TRUE FALSE FALSE 236075.024 229903.655 105520.7923 1469442.219 317407.9352 719310.1174 1403793.247 1611897.445 294555.699 946624.1402 0.249386228 0.242866884 0.111470633 1.552297428 0.335305135 0.759868766 1.482946808 1.702785061 0.311164365 1 19.85243219 -5.241125314 24.63977232 1.029750363 0.205403671 0.411444381 0.448990087 693.1703607 840773.4617 0.124089874 0.214577497 5.74E-06 5.241125314 -0.824346693 KAS(ph)SEGGTAAGAGLDSLHK ddPTM_HeLa_A485_30min_R1 2 KASSEGGTAAGAGLDSLHK 19 1 A0A1W2PNV4;C9JEY1;C9K057;O15143 A0A1W2PNV4 ARPC1B Actin-related protein 2/3 complex subunit 1B 1 0 KAS(0.982)S(0.018)EGGTAAGAGLDSLHK;KAS(0.956)S(0.044)EGGTAAGAGLDSLHK ; 239.96 1.13E-45 648510000 222083 265174 200121 351700 373750 360120 639430 607170 353720 729310 TRUE FALSE FALSE 271484.5972 296183.7926 274154.0856 370912.4804 336538.1377 378975.3263 502810.5568 458260.6055 424708.3595 547506.439 0.495856446 0.540968601 0.500732167 0.67745775 0.614674301 0.692184236 0.918364646 0.836995829 0.775713908 1 19.06251641 -6.201347032 0.365053079 0.980495543 0.40886592 0.850870747 0.064205319 0.661457935 0.178229942 0.074783885 0.144585102 6.29E-07 6.201347032 -0.571629623 NSPTFKS(ph)FEER ddPTM_HeLa_A486_30min_R1 3 NSPTFKSFEER 11 1 E9PNK6;E9PPQ1;J3KNE7;Q16890-5;Q16890 E9PNK6 TPD52L1 Tumor protein D53 1 0 NSPT(0.005)FKS(0.995)FEER;NSPT(0.003)FKS(0.997)FEER;NSPTFKS(1)FEER ;; 133.25 1.55E-05 1193790000 1407700 1199660 575120 1062920 1267450 2213640 3779400 4152100 1224640 3102410 TRUE FALSE FALSE 1309027.499 1104594.573 797821.8662 2474531.477 1108474.602 1940543.603 2833754.146 3206757.47 1330792.781 2325546.343 0.562890309 0.474982825 0.343068573 1.064064573 0.476651263 0.834446327 1.218532649 1.378926496 0.572249521 1 21.14913826 -6.516974563 4.624725287 1.072091719 0.594300138 0.403354947 0.261687844 0.193434184 10.90433218 0.099333239 0.080806766 3.04E-07 6.516974563 -0.477791581 NSPTPATS(ph)TESLSPLHNVALR ddPTM_HeLa_A485_30min_R1 1 NSPTPATSTESLSPLHNVALR 21 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 NS(0.004)PT(0.01)PAT(0.148)S(0.794)T(0.04)ES(0.004)LSPLHNVALR 72.569 0.0038776 96044000 39561 67086 52663 42016 77391 44210 65060 66635 56127 65747 TRUE FALSE FALSE 48361.20797 74931.12413 72145.23519 44311.22769 69685.6803 46524.76724 51159.39951 50292.66177 67391.17407 49357.48288 0.979815119 1.518130985 1.461687894 0.897761091 1.411856445 0.942608183 1.036507466 1.018947054 1.36536894 1 15.5909812 -5.249010286 24.87015754 1.101211106 1.33970329 0.194292818 0.207427226 1107.94961 2216962.366 0.054483446 0.09349975 5.64E-06 5.249010286 0.238492185 NSPVTKT(ph)PPR ddPTM_HeLa_A486_30min_R1 1 NSPVTKTPPR 10 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 NS(0.006)PVT(0.2)KT(0.793)PPR 64.65 0.024878 128770000 237650 193080 135620 197500 283900 242780 407570 438000 185840 413220 TRUE FALSE FALSE 220991.9622 177779.6376 188135.696 459789.9811 248290.6147 212828.272 305591.6752 338276.9615 201948.7608 309747.0224 0.713459521 0.573951079 0.607385003 1.484404846 0.801591611 0.687103528 0.986584706 1.092107226 0.651979668 1 18.24073089 NSQEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A485_30min_R1 8 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 NSQEDS(1)EDS(1)EDKDVK;NS(0.014)QEDS(0.986)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NS(0.002)QEDS(0.998)EDS(1)EDKDVK ;;;;;;; 212.26 6.43E-26 40197960000 6711500 3989130 2114793 21266150 6873275 4816916 13443910 8903510 3405359 27191710 TRUE FALSE FALSE 8204450.021 4455624.053 2897142.935 22427865.93 6188947.607 5069122.273 10571508.8 6719910.212 4088783.315 20413317.12 0.401916551 0.218270457 0.141924162 1.098687969 0.303181868 0.24832428 0.517873148 0.329192466 0.200299799 1 24.2830073 -10.44707545 2.95741575 1.014074525 0.389307836 0.334869865 0.260190818 52585229.14 61655899.56 6174523.358 0.06710808 3.57E-11 10.44707545 -0.624766689 NSQEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A486_30min_R1 9 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 NSQEDS(1)EDS(1)EDKDVK;NS(0.114)QEDS(0.886)EDS(1)EDKDVK;NS(0.001)QEDS(0.999)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK;NSQEDS(1)EDS(1)EDKDVK ;;;;;;;; 221.13 2.93E-33 52566600000 13272900 10133140 2227880 22982950 6802290 16082220 29151970 22761030 7434370 50364100 TRUE FALSE FALSE 12342538.25 9330153.082 3090574.801 53505469.09 5949083.359 14098159.21 21857838.77 17578840.34 8078787.177 37752601.54 0.326932125 0.247139341 0.081863889 1.417265749 0.157580752 0.373435436 0.578975696 0.465632556 0.21399286 1 25.17007273 -11.12841822 2.251336684 2.092562777 0.438539662 0.185008162 0.358924336 111726567.4 27930053.76 623759307.1 0.092301753 7.44E-12 11.12841822 -1.654023114 NSQEDS(ph)EDSEDKDVK ddPTM_HeLa_A485_30min_R1 7 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 NSQEDS(0.81)EDS(0.19)EDKDVK;NSQEDS(0.975)EDS(0.025)EDKDVK;NSQEDS(0.821)EDS(0.179)EDKDVK;NSQEDS(0.745)EDS(0.255)EDKDVK;NSQEDS(0.968)EDS(0.032)EDKDVK;NSQEDS(0.992)EDS(0.008)EDKDVK;NSQEDS(1)EDSEDKDVK ;;;;;; 254.32 1.63E-50 16015680000 2291762 1356351 769155 6533780 2226395 1758263 4647900 3232940 1347557 8478150 TRUE FALSE FALSE 2801556.55 1514964.451 1053697.442 6890703.857 2004727.296 1850322.932 3654838.195 2440056.396 1617999.329 6364703.234 0.440170806 0.238025937 0.165553271 1.082643386 0.314975769 0.290716293 0.574235445 0.383373161 0.254214418 1 22.60166182 -10.22751767 4.2726079 1.000289526 0.420036727 0.331856768 0.248540299 234749209.1 360769095.5 829467.1823 0.06244437 5.92E-11 10.22751767 -0.580252799 NSQEDS(ph)EDSEDKDVK ddPTM_HeLa_A486_30min_R1 3 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 NSQEDS(0.953)EDS(0.047)EDKDVK;NSQEDS(0.995)EDS(0.005)EDKDVK;NSQEDS(0.988)EDS(0.012)EDKDVK ;; 308.1 4.28E-78 5704000000 1391640 1082350 333022 1605700 835140 1655570 2935550 2182720 890288 4193260 TRUE FALSE FALSE 1294093.222 996580.6441 461977.037 3738150.748 730388.9538 1451322.606 2201044.341 1685762.304 967458.8807 3143240.402 0.411706728 0.317055178 0.146974771 1.189266575 0.232368149 0.46172816 0.700246898 0.536313514 0.307790292 1 21.58382119 -11.60953454 2.038439689 9.999430728 0.485126585 0.236780358 0.280816259 13867097.14 503444.7315 579499751.8 0.070847826 2.46E-12 11.60953454 -9.514304143 NSQEDSEDS(ph)EDKDVK ddPTM_HeLa_A485_30min_R1 3 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 NSQEDS(0.087)EDS(0.913)EDKDVK;NSQEDS(0.088)EDS(0.912)EDKDVK;NSQEDSEDS(1)EDKDVK ;; 272.3 1.91E-58 28098800000 1724240 1018530 535599 4918140 1669750 1327770 3456280 2374030 947930 6501250 TRUE FALSE FALSE 2107791.239 1137638.223 733739.3582 5186805.535 1503503.827 1397289.984 2717817.543 1791795.42 1138170.856 4880608.022 0.431870626 0.233093545 0.150337695 1.062737575 0.308056664 0.286294244 0.556860443 0.367125451 0.233202677 1 22.21862946 -10.13668693 4.353063024 1.000087795 0.407448305 0.346021085 0.246043571 77399191.51 22579149.66 75600.32233 0.059808913 7.30E-11 10.13668693 -0.59263949 NSQEDSEDS(ph)EDKDVK ddPTM_HeLa_A486_30min_R1 4 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 NSQEDS(0.229)EDS(0.771)EDKDVK;NSQEDS(0.025)EDS(0.975)EDKDVK;NS(0.001)QEDS(0.454)EDS(0.545)EDKDVK;NSQEDS(0.285)EDS(0.715)EDKDVK ;;; 243.99 1.20E-41 51489000000 1174420 907490 236790 1608620 668450 1424020 2405630 1943700 696520 3897250 TRUE FALSE FALSE 1092099.223 835577.1874 328481.4295 3744948.655 584606.768 1248338.891 1803715.93 1501161.941 756894.9144 2921353.233 0.373833335 0.286024017 0.112441531 1.281922574 0.200115057 0.427315285 0.617424798 0.513858415 0.259090515 1 21.47820538 -11.14761257 2.404605165 2.221770307 0.460446418 0.217138721 0.311570993 35505424.59 8853401.431 236525851.2 0.077210222 7.12E-12 11.14761257 -1.761323888 NSQKHS(ph)PTSEPTPPGDALPPVSSPHTHR ddPTM_HeLa_A485_30min_R1 1 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2;A0A087WX39 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 NS(0.147)QKHS(0.659)PT(0.191)S(0.003)EPTPPGDALPPVSSPHTHR 116.35 9.66E-05 1422900000 391970 582440 444120 246940 925630 367340 831610 707310 481300 648720 TRUE FALSE FALSE 479162.3742 650551.2914 608418.4694 260429.7069 833471.0271 386573.3544 653929.7299 533841.1135 577892.4953 487006.0428 0.983894104 1.335817699 1.249303737 0.534756623 1.711418245 0.793775273 1.342754858 1.096169383 1.186622843 1 18.89358015 -3.98511367 17.55480487 1.141169311 0.697089697 0.022746326 0.304604727 37593022.09 875834472.5 0.070284061 427347295.4 0.000103487 3.98511367 -0.444079614 NSQKHS(ph)PTSEPTPPGDALPPVSSPHTHR ddPTM_HeLa_A486_30min_R1 2 NSQKHSPTSEPTPPGDALPPVSSPHTHR 28 1 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2;A0A087WX39 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 NS(0.141)QKHS(0.573)PT(0.141)S(0.141)EPT(0.003)PPGDALPPVSSPHTHR;NS(0.267)QKHS(0.494)PT(0.236)S(0.002)EPTPPGDALPPVSSPHTHR ; 114.76 0.0001188 1219760000 678600 536960 391030 27687 656650 487860 722170 605140 569170 208364 TRUE FALSE FALSE 631033.6443 494409.334 542447.2881 64456.73522 574286.834 427672.7934 541475.4277 467362.8321 618506.1139 156188.2982 4.040210769 3.165469755 3.473034116 0.412686072 3.67688771 2.738187165 3.466811752 2.992303761 3.960002901 1 17.25292684 NSQPNRYT(ph)NR ddPTM_HeLa_A485_30min_R1 6 NSQPNRYTNR 10 1 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 NSQPNRYT(1)NR;NSQPNRYT(1)NR;NSQPNRYT(1)NR;NSQPNRYT(1)NR;NSQPNRYT(1)NR;NSQPNRYT(1)NR ;;;;; 134.61 6.16E-05 2112900000 1134680 1087488 927646 1223537 1895347 916859 1776420 1582931 813174 1559444 TRUE FALSE FALSE 1387085.651 1214660.262 1270820.858 1290375.728 1706639.598 964864.3195 1396873.355 1194714.69 976370.5629 1170703.31 1.184831066 1.037547473 1.085519146 1.10222267 1.457790016 0.824174931 1.193191599 1.020510218 0.834003419 1 20.15894407 -7.523030778 6.056347737 0.918076137 1.121018835 0.233757199 0.152721126 0.212960102 33.44994058 0.095030442 0.038437889 3.00E-08 7.523030778 0.202942698 NSQPNRYT(ph)NR ddPTM_HeLa_A486_30min_R1 5 NSQPNRYTNR 10 1 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 NSQPNRY(0.004)T(0.996)NR;NSQPNRYT(1)NR;NSQPNRYT(1)NR;NSQPNRY(0.001)T(0.999)NR;NSQPNRYT(1)NR ;;;; 135.02 5.84E-05 916834000 456206 547393 453905 371167 638067 688244 909791 805058 401975 613425 TRUE FALSE FALSE 424228.3153 504015.5851 629669.172 864095.5337 558034.6871 603335.4528 682151.669 621763.8677 436818.5167 459819.3873 0.922597713 1.09611643 1.369383696 1.879206396 1.213595387 1.312113994 1.483520895 1.352191501 0.949978467 1 18.81070777 -7.760096151 24.99997263 0.974989082 1.341337189 0.260464535 0.237554825 48.39772288 900919.5817 0.194177692 0.064213184 1.74E-08 7.760096151 0.366348107 NSS(ph)GPQSGWMK ddPTM_HeLa_A486_30min_R1 2 NSSGPQSGWMK 11 0 F8VXG7;Q99590-2;Q99590 F8VXG7 SCAF11 Protein SCAF11 1 0 NS(0.111)S(0.889)GPQSGWMK;NS(0.009)S(0.971)GPQS(0.02)GWMK ; 78.903 0.0078756 266387000 575200 467040 289600 233223 537800 558430 709430 610180 441980 788310 TRUE FALSE FALSE 534881.4503 430030.0495 401740.8758 542954.9304 470344.1092 489536.5843 531923.1104 471255.3341 480291.1823 590912.045 0.905179468 0.727739523 0.679865776 0.918842212 0.795962975 0.828442386 0.900173071 0.79750504 0.812796399 1 19.17258388 -14 0.210100308 1.876560049 0.790204622 0.357635622 0.072769975 163.6436572 1.631447492 60.4756204 0.158163048 1.00E-14 14 -1.086355427 NSS(ph)PAPPQPAPGK ddPTM_HeLa_A485_30min_R1 4 NSSPAPPQPAPGK 13 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 NS(0.008)S(0.992)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NS(0.002)S(0.998)PAPPQPAPGK;NS(0.001)S(0.999)PAPPQPAPGK ;;; 242.98 4.78E-35 2941580000 3304930 2212280 1868160 5363600 3094440 1918990 3264290 1998680 2303450 6749100 TRUE FALSE FALSE 4040100.277 2470986.902 2559270.125 5656599.887 2786346.688 2019465.349 2566847.775 1508500.596 2765731.287 5066673.578 0.797387125 0.487694118 0.505118415 1.116432665 0.549936096 0.398578144 0.506614001 0.297729975 0.545867272 1 22.27260746 -10.54322182 8.890620404 1.000037111 0.572887554 0.253865517 0.216664819 0.000167527 8.61E-06 0.220513959 0.053477875 2.86E-11 10.54322182 -0.427149556 NSS(ph)PAPPQPAPGK ddPTM_HeLa_A486_30min_R1 5 NSSPAPPQPAPGK 13 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 NS(0.004)S(0.996)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NSS(1)PAPPQPAPGK;NS(0.002)S(0.998)PAPPQPAPGK ;;;; 236.26 8.17E-35 3524140000 3990710 3864430 1697820 1491630 2544652 4097590 4637480 3938940 3373160 4990270 TRUE FALSE FALSE 3710981.837 3558198.493 2355261.373 3472590.023 2225478.018 3592071.007 3477133.454 3042129.348 3665548.225 3740673.911 0.992062373 0.951218571 0.629635576 0.92833273 0.594940396 0.960273762 0.929547332 0.813257028 0.979916537 1 21.83486678 -7.799405044 8.005390596 0.992027089 0.846414547 0.155205375 0.13050338 0.487780332 85.81779936 0.12121434 0.032258815 1.59E-08 7.799405044 -0.145612542 NSS(ph)PEKHILENK ddPTM_HeLa_A485_30min_R1 4 NSSPEKHILENK 12 1 E7EVA0;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein 1 0 NSS(1)PEKHILENK;NS(0.097)S(0.903)PEKHILENK;NS(0.339)S(0.661)PEKHILENK;NS(0.014)S(0.986)PEKHILENK ;;; 230.97 6.04E-24 2108830000 2251820 1467860 953858 4279120 3340180 2015800 4519520 3284460 1849700 7105770 TRUE FALSE FALSE 2752729.59 1639513.458 1306729.768 4512877.49 3007619.951 2121344.171 3553887.631 2478941.035 2220917.824 5334432.311 0.516030466 0.307345442 0.244961355 0.845990206 0.563812563 0.397670089 0.666216651 0.464705688 0.416336302 1 22.34690332 -11.30253676 2.245298761 3.423311463 0.492938476 0.461193742 0.164895641 17199920.73 1958584.049 212197012 0.043092182 4.98E-12 11.30253676 -2.930372988 NSS(ph)PEKHILENK ddPTM_HeLa_A486_30min_R1 2 NSSPEKHILENK 12 1 E7EVA0;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein 1 0 NS(0.33)S(0.67)PEKHILENK;NS(0.001)S(0.999)PEKHILENK ; 191.51 1.31E-13 1487530000 2788300 2399400 1023230 1916950 2597800 3596000 5867000 5187400 2251650 5190400 TRUE FALSE FALSE 2592854.569 2209262.806 1419452.059 4462756.477 2271959.7 3152362.081 4399014.545 4006342.26 2446824.835 3890690.056 0.666425372 0.567833154 0.364832983 1.147034694 0.583947749 0.810232127 1.130651499 1.029725371 0.628892253 1 21.89159462 -5.253856902 24.99908165 0.897750328 0.536510771 0.438717719 0.192355521 577.6712247 1904550.963 0.053057811 0.089710744 5.57E-06 5.253856902 -0.361239557 NSS(ph)PINCSR ddPTM_HeLa_A486_30min_R1 1 NSSPINCSR 9 0 Q15723-2;Q15723-3;Q15723-1;Q15723;Q15723-4 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 NS(0.013)S(0.987)PINCSR 107.11 0.0015094 0 171850 184220 131700 81354 192690 159940 223020 213410 160730 218590 TRUE FALSE FALSE 159804.2024 169621.7363 182697.767 189396.2234 168521.0234 140208.229 167218.0371 164821.2017 174662.2058 163853.6412 0.975286245 1.035202727 1.115005841 1.15588657 1.028485069 0.855691872 1.020532933 1.005905029 1.065964751 1 17.32204821 -5.998772143 24.99857497 0.986383258 1.073670278 0.243264588 0.066912993 60.27821153 1227193.142 0.022103533 0.024868918 1.00E-06 5.998772143 0.087287021 NSS(ph)SESAIVPK ddPTM_HeLa_A485_30min_R1 1 NSSSESAIVPK 11 0 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 NS(0.01)S(0.979)S(0.01)ES(0.001)AIVPK 103.97 0.0008376 107800000 180000 134380 113260 345160 218940 163040 278360 267260 149690 408090 TRUE FALSE FALSE 220040.379 150094.572 155159.5871 364015.2168 197141.5649 171576.5223 218886.112 201714.066 179731.41 306360.6733 0.718239638 0.489927674 0.506460524 1.188191725 0.643495011 0.560047477 0.714471964 0.658420233 0.586666063 1 18.22487159 -10.41008996 2.829690714 1.006947448 0.675258101 0.213776254 0.187547457 23012741.69 26256572.1 1290735.357 0.049498676 3.89E-11 10.41008996 -0.331689347 NSS(ph)VPFGSK ddPTM_HeLa_A485_30min_R1 1 NSSVPFGSK 9 0 Q9BXT8-2 Q9BXT8-2 1 0 NS(0.001)S(0.623)VPFGS(0.377)K 57.267 0.037316 105380000 356120 314230 345800 270460 506730 325530 361670 333760 399010 383300 TRUE FALSE FALSE 435337.6654 350976.4651 473725.8099 285234.545 456278.182 342574.2474 284396.2499 251904.8367 479087.6471 287750.3641 1.512900485 1.219725529 1.64630829 0.991256938 1.585673691 1.190525852 0.988343667 0.875428386 1.664941932 1 18.13445823 -6.504951207 22.34616335 1.117174226 1.375054337 0.180392654 0.264042778 321.4631507 400697.0282 0.08990177 0.077496163 3.13E-07 6.504951207 0.257880111 NSS(ph)VPFGSK ddPTM_HeLa_A486_30min_R1 1 NSSVPFGSK 9 0 Q9BXT8-2 Q9BXT8-2 1 0 NS(0.002)S(0.948)VPFGS(0.051)K 72.365 0.013349 218880000 751990 1131000 789470 68416 1105700 972710 747230 803120 1093900 363250 TRUE FALSE FALSE 699279.3843 1041375.441 1095173.927 159275.9056 967012.7958 852706.93 560265.1506 620267.108 1188720.133 272289.8356 2.568143547 3.824510888 4.022088905 0.584949876 3.551409818 3.131614987 2.05760582 2.277966442 4.365642698 1 18.0547836 -10.72530157 2.81824783 0.680425509 2.900057226 0.228515588 1.063296751 153948496.7 121860328.9 343899733.3 0.262658081 1.88E-11 10.72530157 2.219631717 NSS(ph)WYSSGSR ddPTM_HeLa_A486_30min_R1 1 NSSWYSSGSR 10 0 Q86XZ4 Q86XZ4 SPATS2 Spermatogenesis-associated serine-rich protein 2 1 0 NS(0.007)S(0.992)WYSSGSR 102.97 0.00070209 0 284480 258230 197850 102730 314680 270660 343930 351900 233480 339720 TRUE FALSE FALSE 264539.4211 237766.9143 274462.8186 239160.6317 275209.9001 237268.7211 257875.0763 271780.0519 253718.2344 254651.9008 1.038827593 0.933693853 1.077796073 0.939166882 1.080729809 0.931737483 1.012657182 1.067261038 0.996333558 1 17.95816696 -7.001237323 24.99996304 1.027070205 0.999234853 0.025445397 0.054893895 151.2191417 3055417.036 0.021471596 0.014247308 9.97E-08 7.001237323 -0.027835353 NSSLAGAAFLLLCLLHKR ddPTM_HeLa_A485_30min_R1 1 NSSLAGAAFLLLCLLHKR 18 1 A0A3B3ITW3;P28288-3;P28288-2;P28288 A0A3B3ITW3 ABCD3 ATP-binding cassette sub-family D member 3 0 0 169.28 6.81E-15 13372000 19408 16801 14599 21104 22724 9326.7 36158 30170 8052.4 35019 FALSE FALSE TRUE 23725.24264 18765.7308 19999.77762 22256.85808 20461.51877 9815.03159 28432.54792 22770.7602 9668.442819 26289.40778 0.902463945 0.713813372 0.760754209 0.846609337 0.778317981 0.373345481 1.081521051 0.866157214 0.367769518 1 14.68219402 -4.250998255 21.74520073 0.752236559 0.902464469 0.039072285 0.220295628 920.4707852 1916763.467 0.053047128 0.637386464 5.61E-05 4.250998255 0.15022791 NSSLAGAAFLLLCLLHKR ddPTM_HeLa_A486_30min_R1 2 NSSLAGAAFLLLCLLHKR 18 1 A0A3B3ITW3;P28288-3;P28288-2;P28288 A0A3B3ITW3 ABCD3 ATP-binding cassette sub-family D member 3 0 0 ; ; 96.666 0.00033905 3606400 7429.2 10283.3 6161.2 6244.7 13163.6 13562.8 15174.5 15517.2 7483 16747.7 FALSE FALSE TRUE 6908.451444 9468.413857 8546.981643 14537.97719 11512.49854 11889.55963 11377.6796 11984.2723 8131.632465 12553.96691 0.550300275 0.754216888 0.680819195 1.158038514 0.917040695 0.94707591 0.906301544 0.954620351 0.647734101 1 13.61585569 -5.125651326 10.41952976 0.929837158 0.668566282 0.491781931 0.126309693 0.356096546 28.25332713 0.033673268 0.05840121 7.49E-06 5.125651326 -0.261270877 NSSLGS(ph)PSNLCGS(ph)PPGSIR ddPTM_HeLa_A485_30min_R1 1 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 2 0 NSS(0.004)LGS(0.995)PSNLCGS(1)PPGSIR 142.79 5.50E-08 171180000 216370 261620 242380 324960 388170 222190 346430 308960 224070 433450 TRUE FALSE FALSE 264500.76 292214.1832 332046.4483 342711.742 349522.4319 233823.5248 272412.4004 233187.0756 269038.7937 325398.8921 0.812850832 0.898018372 1.020428945 1.053205006 1.074135286 0.718575049 0.837164499 0.716619144 0.826796895 1 18.31184981 -6.264412039 24.98361267 0.803203151 0.974864869 0.348146211 0.102625324 281.1629815 2363014.67 0.036163154 0.033285052 5.44E-07 6.264412039 0.171661718 NSSLGS(ph)PSNLCGS(ph)PPGSIR ddPTM_HeLa_A486_30min_R1 2 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 2 0 NSS(0.001)LGS(0.999)PSNLCGS(0.998)PPGS(0.001)IR;NSSLGS(1)PS(0.017)NLCGS(0.983)PPGSIR ; 135.49 4.32E-06 333990000 633600 634210 428810 256330 725840 661600 850570 818990 530900 859310 TRUE FALSE FALSE 589187.9119 583952.8898 594856.7159 596749.1942 634798.379 579978.5187 637748.3896 632523.8554 576918.8395 644133.1828 0.914698897 0.906571662 0.923499568 0.926437591 0.98550796 0.900401554 0.990087775 0.981976821 0.895651481 1 19.29699949 -1 0.095204891 1.020045735 0.698711117 0.287122518 0.033378738 178.4446782 1.215122388 0.498896183 7.484428503 0.1 1 -0.321334618 NSSLGSPSNLCGS(ph)PPGSIR ddPTM_HeLa_A485_30min_R1 4 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPS(0.003)NLCGS(0.996)PPGS(0.001)IR;NSSLGSPSNLCGS(1)PPGSIR ;;; 179.63 5.22E-18 1917800000 575036 764518 696405 921470 1126120 553472 1047320 902170 617584 1441230 TRUE FALSE FALSE 702950.7743 853921.7297 954034.1893 971807.5728 1013999.539 582450.9381 823551.5262 680911.393 741527.444 1081957.885 0.649702529 0.789237494 0.881766474 0.898193531 0.937189472 0.538330508 0.761167821 0.629332622 0.685357031 1 20.04521291 -6.243950776 24.99326214 0.702066505 0.835414768 0.132407327 0.133306182 1388.550445 1984402.347 0.042907371 0.042811498 5.70E-07 6.243950776 0.133348264 NSSLGSPSNLCGS(ph)PPGSIR ddPTM_HeLa_A486_30min_R1 4 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 NSSLGSPS(0.011)NLCGS(0.989)PPGSIR;NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPSNLCGS(0.94)PPGS(0.06)IR ;;; 322.49 4.42E-90 1881720000 778470 759310 517720 485694 804830 778080 1080280 1009380 673790 1269810 TRUE FALSE FALSE 723903.273 699139.5102 718195.049 1130720.178 703880.7167 682088.4005 809982.518 779566.2086 732194.6597 951841.3109 0.760529371 0.734512678 0.754532337 1.187929295 0.739493767 0.716598862 0.85096382 0.819008589 0.769240262 1 19.86036154 -11.40018994 2.066067513 2.223851304 0.817690183 0.152620288 0.130783098 18070756.69 1641195.644 103364787.6 0.033596458 3.98E-12 11.40018994 -1.406161122 NSSNKPAVTTK(ac)SPAVKPAAAPK ddPTM_HeLa_A485_30min_R1 2 NSSNKPAVTTKSPAVKPAAAPK 22 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; NSSNKPAVTTK(1)SPAVKPAAAPK;NSSNKPAVTTK(1)SPAVKPAAAPK 143.98 4.33E-12 47033000 49753 37944 31786 79847 67469 44967 86474 64875 41677 116223 FALSE TRUE FALSE 60820.3832 42381.22073 43544.96413 84208.83943 60751.54946 47321.40259 67998.12347 48964.30453 50041.19162 87250.74503 0.697075804 0.485740502 0.499078422 0.96513605 0.696286885 0.542361014 0.779341465 0.561190675 0.573533115 1 16.41287983 -10.6221219 2.559463418 1.038259315 0.644951961 0.368271923 0.139713799 12421721.42 10788682.84 3162360.59 0.038454095 2.39E-11 10.6221219 -0.393307354 NSSNKPAVTTK(ac)SPAVKPAAAPK ddPTM_HeLa_A486_30min_R1 2 NSSNKPAVTTKSPAVKPAAAPK 22 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; NSSNKPAVTTK(0.999)SPAVK(0.001)PAAAPK;NSSNKPAVTTK(1)SPAVKPAAAPK 188.69 1.22E-23 65801000 58866.6 50624 29543 30406.7 54201 67967 89546 81356 48787 103167 FALSE TRUE FALSE 54740.35533 46612.36987 40982.84079 70788.33427 47402.60518 59581.92258 67140.64368 62833.01479 53015.89644 77333.3117 0.70784962 0.602746331 0.529950676 0.915366648 0.612964894 0.770456111 0.868198222 0.812496108 0.685550577 1 16.23880238 -14 0.042327362 2.270268111 0.014729765 0.422529792 0.108258471 717.4716478 2.25851409 112.0675541 31.38974769 1.00E-14 14 -2.255538346 NSSNKPAVTTKS(ph)PAVKPAAAPK ddPTM_HeLa_A485_30min_R1 2 NSSNKPAVTTKSPAVKPAAAPK 22 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 NSSNKPAVT(0.052)T(0.052)KS(0.896)PAVKPAAAPK;NSSNKPAVT(0.084)T(0.084)KS(0.833)PAVKPAAAPK ; 123.83 2.79E-06 3696100000 1527970 776120 446990 3114800 1808970 1313160 3283900 2628210 992980 5275400 TRUE FALSE FALSE 1867861.655 866880.4827 612350.2018 3284953.637 1628862.595 1381915.027 2582267.938 1983637.377 1192261.978 3960339.867 0.471641758 0.218890427 0.154620619 0.829462558 0.411293639 0.348938494 0.652031903 0.500875542 0.301050419 1 21.91719281 -14 0.237570573 4.126308425 0.378072073 0.437196369 0.191236383 165.8154848 1.657014685 250.6515691 0.318480696 1.00E-14 14 -3.748236352 NSSNKPAVTTKS(ph)PAVKPAAAPK ddPTM_HeLa_A486_30min_R1 1 NSSNKPAVTTKSPAVKPAAAPK 22 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 NSSNKPAVT(0.091)T(0.091)KS(0.818)PAVKPAAAPK 89.565 0.0016157 2639500000 2757000 1757100 445680 2391000 1613700 3070500 5430900 4253000 1362000 5341500 TRUE FALSE FALSE 2563748.537 1617860.997 618259.2317 5566368.834 1411294.699 2691692.929 4072031.378 3284684.742 1480059.257 4003953.633 0.640304252 0.404065867 0.154412186 1.390218106 0.352475285 0.672258766 1.017002631 0.820360335 0.36964945 1 21.93299384 -5.195131308 24.9999999 0.780345248 0.400041586 0.260733763 0.309726668 277.6187439 104669.0113 0.081887434 0.141833206 6.38E-06 5.195131308 -0.380303662 NSSNTSVGS(ph)PSNTIGR ddPTM_HeLa_A485_30min_R1 6 NSSNTSVGSPSNTIGR 16 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 NSSNTSVGS(1)PSNTIGR;NSSNTSVGS(1)PSNTIGR;NSSNTS(0.001)VGS(0.999)PSNTIGR;NSSNTSVGS(0.989)PS(0.011)NTIGR;NSSNTS(0.001)VGS(0.999)PSNTIGR;NSSNT(0.002)S(0.208)VGS(0.789)PS(0.001)NTIGR ;;;;; 396.46 4.55E-135 9655580000 2997670 3259620 2867350 3922800 4756410 2688930 4820780 4252570 2540370 5758450 TRUE FALSE FALSE 3664491.35 3640804.204 3928102.085 4137092.631 4282845.12 2829718.217 3790780.971 3209620.54 3050198.957 4322974.391 0.847678246 0.842198883 0.908657265 0.95700142 0.990717208 0.654576678 0.876891841 0.742456524 0.705578771 1 22.04359286 -6.247251299 24.99879287 0.784866229 0.908145363 0.245126328 0.098499857 1080.304491 1903451.888 0.031663062 0.031515797 5.66E-07 6.247251299 0.123279134 NSSNTSVGS(ph)PSNTIGR ddPTM_HeLa_A486_30min_R1 5 NSSNTSVGSPSNTIGR 16 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 NSSNTS(0.003)VGS(0.997)PSNTIGR;NSSNT(0.001)S(0.173)VGS(0.822)PS(0.004)NTIGR;NSSNTS(0.052)VGS(0.948)PSNTIGR;NSSNTS(0.001)VGS(0.999)PS(0.001)NTIGR;NSSNTSVGS(1)PSNTIGR ;;;; 401.44 3.80E-152 6994800000 3667670 3389520 2091351 1494613 3505500 3532270 4562160 4256460 3002310 5047920 TRUE FALSE FALSE 3410585.273 3120922.091 2901178.116 3479534.598 3065807.503 3096494.441 3420659.314 3287356.976 3262552.648 3783887.976 0.901344145 0.824792412 0.766718818 0.919565965 0.810226815 0.818336711 0.904006497 0.868777563 0.862222315 1 21.85143795 -9.696460088 0.3738128 1.052252303 0.838046138 0.49858945 0.045037099 8.699902712 1.071556036 0.576416898 0.033747834 2.01E-10 9.696460088 -0.214206165 NSSQSGGKPGS(ph)SPITK ddPTM_HeLa_A485_30min_R1 1 NSSQSGGKPGSSPITK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NSSQSGGKPGS(0.5)S(0.5)PITK 95.5 0.00036857 873750000 251260 198290 154120 438570 323860 257340 537370 429320 214330 724040 TRUE FALSE FALSE 307151.9202 221478.2906 211135.4015 462527.9686 291615.3613 270813.9245 422556.5096 324028.5969 257344.065 543550.153 0.565084783 0.407466154 0.388437756 0.850938899 0.536501296 0.498231714 0.777401142 0.596133761 0.473450451 1 19.05205363 -14 0.216979083 3.104300576 0.513816418 0.454569278 0.141488333 144.179808 1.441751761 132.8228873 0.289666825 1.00E-14 14 -2.590484158 NSSQSGGKPGSS(ph)PITK ddPTM_HeLa_A485_30min_R1 2 NSSQSGGKPGSSPITK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NSSQSGGKPGS(0.24)S(0.759)PITK;NSSQSGGKPGS(0.028)S(0.972)PITK ; 168.81 2.10E-12 5021700000 2331700 1802310 1034890 3957600 2885980 1941140 4369400 3636500 1581130 5463700 TRUE FALSE FALSE 2850378.621 2013074.476 1417738.876 4173793.667 2598641.698 2042775.089 3435841.995 2744642.673 1898448.288 4101700.142 0.694926134 0.490790259 0.345646641 1.017576498 0.633552334 0.498031309 0.83766289 0.669147568 0.462844241 1 21.9677906 -11.23913349 2.386942571 2.374872375 0.630674739 0.265498813 0.18566739 10242640.14 2619796.698 75507925.68 0.04628126 5.77E-12 11.23913349 -1.744197636 NSSQSGGKPGSS(ph)PITK ddPTM_HeLa_A486_30min_R1 3 NSSQSGGKPGSSPITK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NSSQSGGKPGS(0.089)S(0.911)PITK;NSSQSGGKPGS(0.163)S(0.837)PITK;NSSQSGGKPGS(0.107)S(0.893)PITK ;; 152.06 2.02E-08 7139860000 3056010 2235310 927070 1567700 2018480 2788800 4279500 3669600 1901150 4501500 TRUE FALSE FALSE 2841799.48 2058175.895 1286056.332 3649684.827 1765303.417 2444746.21 3208723.836 2834112.187 2065943.213 3374295.1 0.84219056 0.60995729 0.381133331 1.081614002 0.523162131 0.72452057 0.950931599 0.839912368 0.612259198 1 21.68615472 -13.99999999 0.107355842 1.868750812 0.566973035 0.145401105 0.19735227 324.6241613 2.32773653 62.21209067 2.664364736 1.00E-14 13.99999999 -1.301777777 NSSQSLMVPQSGS(ph)PEPESIR ddPTM_HeLa_A485_30min_R1 1 NSSQSLMVPQSGSPEPESIR 20 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;A0A075B6R8;B7ZB24;H0YGQ3 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 NSSQSLMVPQS(0.205)GS(0.794)PEPES(0.001)IR 98.443 0.00027745 217220000 196510 192110 154820 287250 313700 218930 298980 265070 209890 356290 TRUE FALSE FALSE 240222.9715 214575.5934 212094.3606 302941.7401 282466.9265 230392.8363 235100.4806 200061.1669 252012.9978 267473.46 0.898118907 0.802231344 0.792954787 1.132604858 1.056055904 0.861367091 0.878967508 0.747966422 0.942198145 1 18.02903622 -10.45039126 0.006319573 1.868186514 7.94E-06 0.026178813 0.11467738 121013.1943 124.888047 19283.31855 17659.67048 3.54E-11 10.45039126 -1.868178575 NSSQSLMVPQSGS(ph)PEPESIR ddPTM_HeLa_A486_30min_R1 2 NSSQSLMVPQSGSPEPESIR 20 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;A0A075B6R8;B7ZB24;H0YGQ3 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 NSSQSLMVPQS(0.004)GS(0.996)PEPESIR;NSSQSLMVPQS(0.045)GS(0.955)PEPESIR ; 198.98 3.34E-26 337890000 708980 713280 483460 320360 829770 776930 990590 919150 695140 945910 TRUE FALSE FALSE 659284.1632 656757.0951 670668.6595 745814.2701 725692.5093 681080.2758 742733.9046 709879.6099 755395.2949 709047.9792 0.92981601 0.926251981 0.945872041 1.051853037 1.023474477 0.960555979 1.047508669 1.001172884 1.065365556 1 19.43552373 -5.140654151 5.240124448 1.019907425 0.930075406 0.663490282 0.02864838 0.133387368 5.157164857 0.007711649 0.013702609 7.23E-06 5.140654151 -0.089832019 NSSS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_A486_30min_R1 3 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 NS(0.108)S(0.261)S(0.631)PVS(1)PASVPGQR;NSS(0.01)S(0.99)PVS(1)PASVPGQR;NS(0.001)S(0.141)S(0.858)PVS(1)PASVPGQR ;; 252.37 1.43E-42 299210000 999720 1136080 768660 582530 1190220 1254120 1539280 1422990 971380 1508240 TRUE FALSE FALSE 929644.7906 1046052.883 1066305.737 1356159.279 1040931.509 1099399.425 1154135.863 1099006.241 1055580.001 1130566.887 0.822281991 0.925246348 0.943160241 1.199539183 0.920716431 0.972432006 1.020847043 0.972084229 0.933673198 1 20.10861492 -4.49442749 2.103005678 0.999639808 0.816548623 0.349601223 0.074119364 0.495033015 3.440158837 0.020340712 0.143075903 3.20E-05 4.49442749 -0.183091185 NSSS(ph)PVSLDAALPESSNVYRDPSAK ddPTM_HeLa_A486_30min_R1 1 NSSSPVSLDAALPESSNVYRDPSAK 25 1 H7C296;H7C1E9;Q70EL1-6;Q70EL1-7;Q70EL1;R4GN32 H7C296 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 0 NS(0.053)S(0.198)S(0.747)PVS(0.002)LDAALPESSNVYRDPSAK 98.002 0.0008671 106980000 84767 67091 43413 45108 74651 98751 113170 103060 71484 107570 TRUE FALSE FALSE 78825.27104 61774.46482 60223.67624 105013.7036 65287.57549 86568.10565 84853.66901 79595.48778 77680.29068 80633.77184 0.977571423 0.766111561 0.746879067 1.302353855 0.809680287 1.073596133 1.052334116 0.987123459 0.963371661 1 16.29909659 -5.157597986 22.34704222 1.020735659 0.823777146 0.328410588 0.128606637 16.76458809 3599.099118 0.03305944 0.057260647 6.96E-06 5.157597986 -0.196958513 NSSS(ph)PVSPASVPGQR ddPTM_HeLa_A485_30min_R1 4 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 NSS(0.005)S(0.995)PVSPASVPGQR;NSS(0.002)S(0.998)PVSPASVPGQR;NSS(0.002)S(0.998)PVSPASVPGQR;NSS(0.009)S(0.991)PVSPASVPGQR ;;; 342.02 5.26E-91 2453790000 1356200 1434290 1444320 1910530 2095830 1250170 2102220 1758730 1289070 2811630 TRUE FALSE FALSE 1657882.011 1602017.739 1978634.071 2014897.416 1887161.806 1315626.968 1653063.523 1327398.71 1547774.525 2110742.385 0.785449718 0.758983072 0.937411446 0.954591821 0.894074909 0.623300587 0.783166878 0.62887765 0.733284429 1 21.00931908 -6.236241227 24.70355402 0.732370808 0.869028859 0.185370241 0.113372691 935.3724816 917013.0319 0.036786217 0.036772463 5.80E-07 6.236241227 0.136658051 NSSS(ph)PVSPASVPGQR ddPTM_HeLa_A486_30min_R1 3 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 NSS(0.027)S(0.973)PVSPASVPGQR;NSS(0.023)S(0.977)PVSPASVPGQR;NS(0.003)S(0.026)S(0.961)PVS(0.008)PAS(0.001)VPGQR ;; 260.58 2.09E-50 1517310000 840860 899310 530190 395100 901320 947970 1162510 1130660 777030 1169890 TRUE FALSE FALSE 781920.0562 828045.4004 735493.767 919812.7672 788268.0411 831019.0997 871637.7022 873233.4001 844383.586 876941.9293 0.891644053 0.944241999 0.838702932 1.048886747 0.898882828 0.947632987 0.99395145 0.995771066 0.962872863 1 19.74212179 -5.034439855 0.348590809 0.99794379 0.854047793 0.289073811 0.049785398 5.111628158 0.743083035 0.050304611 0.296835343 9.24E-06 5.034439855 -0.143895997 NSSSS(ph)T(ph)SPVSK ddPTM_HeLa_A486_30min_R1 1 NSSSSTSPVSK 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 2 0 NSSS(0.04)S(0.943)T(0.596)S(0.42)PVSK 107.53 0.0016253 0 321750 207630 145060 139950 242510 380140 356920 322360 276650 501060 TRUE FALSE FALSE 299196.9865 191176.6426 201231.1168 325810.6727 212092.1345 333242.1918 267614.8409 248965.6651 300630.2447 375591.3146 0.796602517 0.509001766 0.535771486 0.867460615 0.564688602 0.887246799 0.712516053 0.662863212 0.800418521 1 18.51880418 -14 0.130214618 2.035557136 0.570166287 0.371986531 0.123912154 152.344937 1.248955422 40.90578438 0.926440162 1.00E-14 14 -1.465390849 NSSSS(ph)TSPVSK ddPTM_HeLa_A485_30min_R1 1 NSSSSTSPVSK 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 NSSS(0.001)S(0.491)T(0.254)S(0.254)PVSK 113.24 0.00043977 96654000 286050 277040 190170 444120 336910 281850 451660 457860 254360 593910 TRUE FALSE FALSE 349680.8356 309437.4181 260521.7966 468381.151 303366.0574 296607.2302 355159.1513 345569.1171 305407.7189 445859.1671 0.784285401 0.694025022 0.584314097 1.050513672 0.680407805 0.665248697 0.7965725 0.775063389 0.684986968 1 18.76622855 -10.13810124 4.505830676 1.000032062 0.746835231 0.291430268 0.118739187 158697002.4 4.002224777 54499.38117 0.028286405 7.28E-11 10.13810124 -0.253196831 NSSSSS(ph)SPSERPR ddPTM_HeLa_A485_30min_R1 1 NSSSSSSPSERPR 13 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 NS(0.01)S(0.01)S(0.01)S(0.065)S(0.447)S(0.447)PS(0.013)ERPR 68.257 0.0058294 17222000 9484.7 14838 15253 14111 16712 15050 13485 17636 11338 16387 TRUE FALSE FALSE 11594.53879 16573.17503 20895.71943 14881.8482 15048.0946 15837.99473 10603.81959 13310.74335 13613.4326 12302.02248 0.942490457 1.347191086 1.698559685 1.209707446 1.223221192 1.287430157 0.861957422 1.081996344 1.106601181 1 13.5866079 -6.698944226 10.11296916 1.019680187 1.300652961 0.341197923 0.184363689 0.492309336 76.4374686 0.073663997 0.056973274 2.00E-07 6.698944226 0.280972775 NSSSSS(ph)SPSERPR ddPTM_HeLa_A486_30min_R1 1 NSSSSSSPSERPR 13 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 NS(0.098)S(0.098)S(0.098)S(0.075)S(0.357)S(0.267)PS(0.006)ERPR 52.522 0.0094561 0 12396 12019 11770 3897.8 12629 12895 14330 14534 14074 14830 TRUE FALSE FALSE 11527.10441 11066.57067 16327.65921 9074.275384 11044.95306 11304.14601 10744.48243 11224.92547 15293.94565 11116.47147 1.036939144 0.995511093 1.468780741 0.816290979 0.993566447 1.016882563 0.96653713 1.009756154 1.375791382 1 13.44041131 -10.08696937 12.22757693 0.999972064 1.067868138 0.013107195 0.186224622 0 0 0.177332629 0.04300948 8.19E-11 10.08696937 0.067896074 NSSSSSS(ph)PSERPR ddPTM_HeLa_A485_30min_R1 2 NSSSSSSPSERPR 13 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 NS(0.001)S(0.001)S(0.001)S(0.003)S(0.171)S(0.816)PS(0.007)ERPR;NSSSS(0.002)S(0.009)S(0.989)PSERPR ; 101.04 0.00035144 909350000 187263 224016 191816 281155 314180 196846 289580 310480 221453 406580 TRUE FALSE FALSE 228919.0083 250212.7225 262776.7205 296513.7857 282899.136 207152.5522 227708.8673 234334.2932 265896.5858 305227.0886 0.749995714 0.819759228 0.860922016 0.971453049 0.926848064 0.67868338 0.746030991 0.767737537 0.871143472 1 18.21952348 -6.226273054 24.99185354 0.794034549 0.868837127 0.052295156 0.09754958 1389.970458 987818.511 0.032789299 0.032787877 5.94E-07 6.226273054 0.074802578 NSSSSSS(ph)PSERPR ddPTM_HeLa_A486_30min_R1 1 NSSSSSSPSERPR 13 1 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 NSSSSS(0.021)S(0.979)PSERPR 112.36 0.00013161 341940000 256450 203510 156370 96400 231910 252900 278660 246090 235030 282790 TRUE FALSE FALSE 238474.1793 187383.1264 216920.6517 224424.0718 202821.6853 221699.7693 208936.3206 190060.6791 255402.5896 211977.5433 1.124997373 0.883976309 1.023319019 1.058716259 0.956807415 1.045864415 0.98565309 0.896607613 1.204856824 1 17.69355191 -7.760470882 24.9999975 1.102428366 0.996072041 0.205216329 0.082981814 36.83156322 950961.6818 0.05948523 0.019535941 1.74E-08 7.760470882 -0.106356326 NSSSST(ph)SPVSK ddPTM_HeLa_A485_30min_R1 1 NSSSSTSPVSK 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 NSSSS(0.163)T(0.419)S(0.419)PVSK 181.88 8.93E-10 58213000 246230 251200 178780 393720 292640 240530 400770 400910 217930 533540 TRUE FALSE FALSE 301003.014 280575.6549 244918.1617 415227.9266 263503.7341 253123.7789 315142.2155 302586.1939 261666.552 400538.2971 0.751496215 0.700496449 0.611472519 1.036674719 0.657874006 0.631958993 0.786796713 0.755448845 0.653287224 1 18.61158067 -10.10549151 4.00746703 1.000060934 0.733448215 0.325775862 0.115759807 80263625.78 123542083.9 68840.83502 0.028611619 7.84E-11 10.10549151 -0.266612719 NSSSST(ph)SPVSK ddPTM_HeLa_A486_30min_R1 2 NSSSSTSPVSK 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 NSSSS(0.026)T(0.487)S(0.487)PVSK;NSSSS(0.012)T(0.494)S(0.494)PVSK ; 179.46 1.04E-09 78982000 528500 343610 257960 229904 368890 559310 581030 472740 423840 704610 TRUE FALSE FALSE 491454.8792 316381.0922 357849.0204 535228.1307 322620.3764 490308.0188 435650.1485 365107.4218 460578.7925 528171.0698 0.930484283 0.599012536 0.677524842 1.013361317 0.610825535 0.928312903 0.824827738 0.691267362 0.872025786 1 19.01064576 -13.99999998 0.222771967 2.099802462 0.761837065 0.17438917 0.136489485 267.6488526 2.679725422 132.0760802 0.247293117 1.00E-14 13.99999998 -1.337965396 NSSTDQGS(ph)DEEGSLQK ddPTM_HeLa_A485_30min_R1 2 NSSTDQGSDEEGSLQK 16 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 NSSTDQGS(1)DEEGSLQK;NSSTDQGS(1)DEEGSLQK ; 389.49 6.79E-189 0 534820 403210 315820 920950 592490 439030 752560 657250 445940 1259760 TRUE FALSE FALSE 653788.8639 450361.902 432654.9604 971259.1665 533499.6152 462016.9319 591769.4082 496058.407 535436.0676 945725.0162 0.691309686 0.476208088 0.457484949 1.026999551 0.56411706 0.488531998 0.625730945 0.524527107 0.566164645 1 19.85106123 -10.32290992 5.530063308 1.00007192 0.600788876 0.365064769 0.157317887 0.000141656 1.73E-05 0.154681075 0.037508946 4.75E-11 10.32290992 -0.399283044 NSSTDQGS(ph)DEEGSLQK ddPTM_HeLa_A486_30min_R1 3 NSSTDQGSDEEGSLQK 16 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 NSSTDQGS(1)DEEGSLQK;NSSTDQGS(1)DEEGSLQK;NSSTDQGS(1)DEEGSLQK ;; 347.53 7.54E-122 843510000 1013890 979590 483370 440446 798633 1183450 1361930 1270750 859618 1687040 TRUE FALSE FALSE 942821.5467 901963.7208 670543.8091 1025380.547 698461.0022 1037447.971 1021160.709 981427.9653 934130.3804 1264594.203 0.74555264 0.713243599 0.530244253 0.810837614 0.552320262 0.820380142 0.807500704 0.776081341 0.738679948 1 20.27024308 -9.526976431 0.247643938 1.145061745 0.652864892 0.483854176 0.092006351 9.239310519 0.689788073 1.212432276 0.167918485 2.97E-10 9.526976431 -0.492196852 NSSTETDQQPHS(ph)PDSSSSVHSIR ddPTM_HeLa_A485_30min_R1 1 NSSTETDQQPHSPDSSSSVHSIR 23 0 Q92613 Q92613 JADE3 Protein Jade-3 1 0 NSSTETDQQPHS(0.971)PDS(0.022)S(0.006)SSVHSIR 186.35 4.92E-21 584670000 141970 236610 279850 53796 418770 165990 262510 230880 207830 138230 TRUE FALSE FALSE 173550.7367 264279.4813 383378.1605 56734.73926 377075.7884 174680.9797 206422.594 174256.318 249539.5747 103771.8049 1.672426695 2.546736866 3.694434734 0.546725956 3.633701742 1.683318314 1.989197298 1.679226049 2.40469533 1 16.66305499 -10.29715129 0.226799193 2.62E-16 2.489861627 0.145225464 0.894134599 38.39305994 1.749125244 24.64663946 1.818087162 5.04E-11 10.29715129 2.489861627 NSSVPFGS(ph)K ddPTM_HeLa_A486_30min_R1 1 NSSVPFGSK 9 0 Q9BXT8-2 Q9BXT8-2 1 0 NS(0.002)S(0.361)VPFGS(0.637)K 68.657 0.015844 192820000 482210 725570 559510 54142 775450 587100 513580 563950 663600 266570 TRUE FALSE FALSE 448409.5691 668073.1907 776167.2562 126045.3122 678185.8302 514669.5712 385076.8519 435550.8959 721121.3823 199819.1369 2.244077199 3.343389432 3.884348958 0.630797 3.393998396 2.57567708 1.92712699 2.179725639 3.608870469 1 17.60833523 -10.85325447 2.625809683 0.33029376 2.62644403 0.222732973 0.920360117 30898098.99 20776130.31 129801329.4 0.227759755 1.40E-11 10.85325447 2.29615027 NSSYFVEWIPNNVK ddPTM_HeLa_A485_30min_R1 4 NSSYFVEWIPNNVK 14 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB4B;TUBB3;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;;; ;;; 303.51 4.25E-66 168699000 255688 274579 214581 388477 424250 276763 479437 409992 217948 552699 FALSE FALSE TRUE 312564.9135 306688.6255 293963.4414 409698.5148 382010.1804 291253.8827 377001.3683 309440.8192 261688.1645 414921.311 0.753311303 0.739148888 0.708479978 0.987412562 0.920681031 0.701949683 0.908609315 0.745781937 0.630693477 1 18.66247823 NSSYFVEWIPNNVK ddPTM_HeLa_A486_30min_R1 1 NSSYFVEWIPNNVK 14 0 Q5JP53;P07437;Q5ST81;P68371;A0A0B4J269;Q13509;Q13509-2;P04350;Q9BUF5;K7ESM5 Q5JP53;P68371;A0A0B4J269;P04350;Q9BUF5 TUBB;TUBB4B;TUBB3;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 153.63 1.63E-06 57890000 129400 131550 75153 78384 155010 160570 195830 186690 115730 199620 FALSE FALSE TRUE 120329.7282 121125.4989 104254.2543 182481.9133 135567.2004 140760.506 146831.2627 144184.7624 125761.5696 149633.8527 0.804161131 0.80947925 0.696729065 1.219522922 0.905992848 0.940699604 0.981270348 0.96358384 0.840462017 1 17.19107708 -5.217455375 24.99991032 0.972756182 0.774058731 0.495155023 0.096395096 398.4061657 226448.0977 0.025601868 0.044343429 6.06E-06 5.217455375 -0.19869745 NST(ph)PS(ph)EPGSGR ddPTM_HeLa_A486_30min_R1 2 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 NS(0.02)T(0.981)PS(0.999)EPGS(0.001)GR;NS(0.478)T(0.522)PS(0.998)EPGS(0.002)GR ; 85.287 0.0097927 188304000 336320 369380 242920 162274 345610 397700 453590 404180 325260 488190 TRUE FALSE FALSE 312745.7048 340108.9835 336985.1296 377782.0729 302260.3711 348635.8175 340096.9844 312157.0372 353453.7987 365944.0464 0.854627115 0.929401604 0.920865178 1.03234928 0.825974282 0.952702526 0.929368814 0.853018488 0.965868422 1 18.48126355 -7.993279165 24.80397508 1.000000018 0.915764695 0.214124245 0.055758972 176.4085954 651051.3978 0.05182694 0.013381658 1.02E-08 7.993279165 -0.084235324 NST(ph)PSEPGSGR ddPTM_HeLa_A485_30min_R1 6 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NS(0.104)T(0.889)PS(0.007)EPGSGR;NS(0.03)T(0.967)PS(0.002)EPGSGR;NS(0.031)T(0.939)PS(0.031)EPGSGR;NS(0.031)T(0.965)PS(0.004)EPGSGR;NS(0.049)T(0.948)PS(0.003)EPGSGR;NS(0.046)T(0.948)PS(0.007)EPGSGR ;;;;; 154.23 2.00E-06 13192082000 5981990 6030348 5405723 8771320 9320020 4966302 8531480 6665478 5374946 11794110 TRUE FALSE FALSE 7312663.038 6735544.742 7405524.889 9250475.001 8392086.084 5226329.893 6708659.602 5030759.069 6453648.36 8854055.432 0.825911143 0.760729904 0.836399201 1.044772655 0.947823983 0.590275262 0.757693427 0.568186986 0.728891795 1 23.07790697 -6.25173807 24.85516285 0.703813924 0.882711803 0.244901644 0.131642652 810.6511957 2076923.958 0.043625113 0.043091291 5.60E-07 6.25173807 0.178897878 NST(ph)PSEPGSGR ddPTM_HeLa_A486_30min_R1 5 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NS(0.036)T(0.964)PSEPGSGR;NS(0.262)T(0.738)PSEPGSGR;NS(0.026)T(0.971)PS(0.003)EPGSGR;NS(0.044)T(0.947)PS(0.009)EPGSGR;NS(0.068)T(0.902)PS(0.03)EPGSGR ;;;; 181.88 8.93E-10 14200910000 11781010 11337070 7235840 5001869 11109320 12182050 15172640 14026870 9647080 15741790 TRUE FALSE FALSE 10955222.04 10438679.28 10037751.03 11644603.81 9715885.495 10679152.53 11376284.99 10833257.91 10483296.66 11799943.32 0.928413106 0.884638087 0.850660953 0.986835572 0.823384082 0.905017273 0.964096579 0.918077114 0.888419239 1 23.49227659 -14 0.223722395 1.492227277 0.893876336 0.274108995 0.046075547 207.5509525 2.078213563 46.07403946 0.084138415 1.00E-14 14 -0.598350941 NST(ph)TLPR ddPTM_HeLa_A485_30min_R1 1 NSTTLPR 7 0 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 NS(0.015)T(0.87)T(0.115)LPR 110.76 0.014275 4080300000 6779700 6156600 5882700 7163800 9828800 6126700 12126000 10091000 5445700 9915700 TRUE FALSE FALSE 8287820.875 6876560.815 8058955.53 7555140.254 8850210.161 6447484.538 9535181.04 7616166.428 6538602.039 7443898.475 1.113371025 0.923784874 1.082625664 1.014944022 1.188921395 0.866143535 1.280939157 1.023142169 0.878384097 1 22.82762695 -7.537285231 20.27123184 0.943047678 1.064024546 0.160447685 0.115797302 47.24569827 66463.65927 0.073214557 0.027747547 2.90E-08 7.537285231 0.120976868 NSTGGTSVGWDS(ph)PPASPLQR ddPTM_HeLa_A485_30min_R1 2 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 0 NSTGGTSVGWDS(1)PPASPLQR;NSTGGTSVGWDS(1)PPASPLQR ; 237.6 4.45E-46 665640000 357240 429780 363110 471080 582060 376320 593450 608530 356830 693470 TRUE FALSE FALSE 436706.8055 480039.0324 497439.4993 496813.9076 524108.0627 396023.5333 466654.5595 459287.0634 428442.508 520600.6914 0.838851759 0.922086813 0.955510639 0.954308966 1.006737162 0.76070497 0.896377141 0.882225227 0.822977217 1 18.9898177 -6.241749059 24.98975433 0.866590983 0.936910682 0.170648378 0.068850073 1356.724105 1721872.653 0.02217385 0.022141499 5.73E-07 6.241749059 0.070319699 NSTGGTSVGWDS(ph)PPASPLQR ddPTM_HeLa_A486_30min_R1 3 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 0 NSTGGTSVGWDS(1)PPASPLQR;NSTGGTSVGWDS(1)PPASPLQR;NSTGGTSVGWDS(1)PPASPLQR ;; 325.44 7.28E-103 736200000 591260 602200 402333 285086 627400 631080 790820 737870 517610 852040 TRUE FALSE FALSE 549815.7273 554479.4788 558127.1125 663694.6154 548705.6417 553223.766 592948.4716 569873.1086 562476.8516 638683.6382 0.860857699 0.86815983 0.873871005 1.039160197 0.859119616 0.866193735 0.928391517 0.89226195 0.88068148 1 19.28474197 -11.54916309 2.082114776 2.418879582 0.898036732 0.265823304 0.05153563 5526466.342 342611.3359 37016111.29 0.014508145 2.82E-12 11.54916309 -1.52084285 NSTPS(ph)EPGSGR ddPTM_HeLa_A485_30min_R1 2 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NST(0.01)PS(0.99)EPGSGR;NS(0.001)T(0.05)PS(0.942)EPGS(0.007)GR ; 137.09 1.75E-05 6293600000 2887800 3145800 3215300 4170900 4441700 2675900 4313500 3122800 2944800 5802000 TRUE FALSE FALSE 3530181.147 3513673.945 4404773.27 4398745.706 3999468.752 2816005.986 3391885.487 2356928.404 3535794.349 4355668.178 0.810479817 0.806689996 1.011273837 1.009889993 0.918221634 0.64651527 0.778729083 0.541117529 0.811768529 1 22.05446262 -6.244903234 23.91139371 0.72838987 0.916528899 0.254722817 0.128856215 544.1658379 786867.6503 0.041960004 0.041826593 5.69E-07 6.244903234 0.188139029 NSTPS(ph)EPGSGR ddPTM_HeLa_A486_30min_R1 2 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NS(0.001)T(0.043)PS(0.956)EPGSGR;NST(0.018)PS(0.979)EPGS(0.002)GR ; 168.18 4.38E-08 8858800000 3094850 3397620 2204060 1228700 3241730 3634440 3889900 3930680 2944910 4203960 TRUE FALSE FALSE 2877916.997 3128380.217 3057531.059 2860475.695 2835121.995 3186059.745 2916605.877 3035749.97 3200177.17 3151261.053 0.913258835 0.992739149 0.970256354 0.907724129 0.899678557 1.011042783 0.925536104 0.963344489 1.015522712 1 21.58749784 -7.649347097 4.450902091 1.007352005 0.94758141 0.32550689 0.035056266 0.262919989 8.68876125 0.026947436 0.009162378 2.24E-08 7.649347097 -0.059770595 NSTPS(ph)EPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIR ddPTM_HeLa_A485_30min_R1 1 NSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIR 38 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NS(0.01)T(0.378)PS(0.611)EPGS(0.001)GRGPPQEEEEEEDEEEEATKEDAEAPGIR 324.38 3.43E-112 776130000 107970 169820 87077 148680 202520 213800 383130 494270 103520 243050 TRUE FALSE FALSE 131987.554 189678.9718 119290.4059 156802.0119 182356.3977 224994.2374 301271.1456 373049.5075 124295.5145 182462.108 0.723369665 1.039552671 0.653781803 0.859367535 0.999420645 1.233101162 1.651143621 2.044531391 0.681212751 1 17.47723736 -6.244496203 2.331454916 1.428292816 0.830334283 0.297172496 0.35669925 0.335761504 3.591453078 0.134710272 0.125771871 5.70E-07 6.244496203 -0.597958533 NSTT(ph)LPR ddPTM_HeLa_A485_30min_R1 1 NSTTLPR 7 0 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 NST(0.149)T(0.85)LPR 108.26 0.015421 4009600000 6974000 6269300 5516100 7145300 10338000 6496200 11962000 9787800 5365100 10515000 TRUE FALSE FALSE 8525342.24 7002440.099 7556734.934 7535629.646 9308712.421 6836330.987 9406220.979 7387326.703 6441826.358 7893804.014 1.080004295 0.887080562 0.957299538 0.954625885 1.179242911 0.866037588 1.191595454 0.935838626 0.816061096 1 22.91228927 -7.511149768 24.96837687 0.89733696 1.011406402 0.142376638 0.111905724 989.4875266 2106421.287 0.063526926 0.02774159 3.08E-08 7.511149768 0.114069442 NSVHEQEAINS(ph)DPELSNCENFQK ddPTM_HeLa_A485_30min_R1 1 NSVHEQEAINSDPELSNCENFQK 23 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 NSVHEQEAINS(1)DPELSNCENFQK 179.54 8.08E-21 116850000 51806 66504 56859 52270 104720 47951 89110 81815 52455 88344 TRUE FALSE FALSE 63330.06597 74281.06429 77893.5102 55125.37775 94293.70911 50461.64021 70070.92054 61749.74297 62982.23735 66321.46665 0.954895438 1.120015404 1.174484132 0.83118454 1.421767549 0.760864359 1.056534544 0.931067211 0.949650853 1 16.01718829 NSVHEQEAINS(ph)DPELSNCENFQK ddPTM_HeLa_A486_30min_R1 4 NSVHEQEAINSDPELSNCENFQK 23 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 NSVHEQEAINS(1)DPELSNCENFQK;NSVHEQEAINS(1)DPELSNCENFQK;NSVHEQEAINS(1)DPELSNCENFQK;NSVHEQEAINS(1)DPELSNCENFQK ;;; 214.78 3.23E-30 559689000 229760 243693 159432 24080.6 260700 236973 316394 280443 234936 186359 TRUE FALSE FALSE 213655.0105 224381.8792 221168.3401 56060.85377 228000.5751 207737.6806 237228.8747 216592.2509 255300.4416 139693.4934 1.529455705 1.606244312 1.583240098 0.401313278 1.632148853 1.487096325 1.698209909 1.550482028 1.827575755 1 17.0919053 NSVLSDPGLDS(ph)PRTS(ph)PVIMAR ddPTM_HeLa_A485_30min_R1 4 NSVLSDPGLDSPRTSPVIMAR 21 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 0 NSVLSDPGLDS(1)PRT(0.022)S(0.978)PVIMAR;NSVLSDPGLDS(1)PRT(0.043)S(0.957)PVIMAR;NSVLSDPGLDS(1)PRT(0.117)S(0.883)PVIMAR;NSVLSDPGLDS(1)PRT(0.041)S(0.959)PVIMAR ;;; 201.66 1.95E-26 2186660000 177427 238247 212340 276050 328427 201869 327768 328972 185848 372526 TRUE FALSE FALSE 216895.024 266107.9142 290893.4022 291129.9125 295727.6547 212438.5487 257737.6892 248291.1012 223145.9889 279662.124 0.775560955 0.951533623 1.040160169 1.041005869 1.057446216 0.759625743 0.921603846 0.887825271 0.797912802 1 18.09332535 -6.251087079 24.92306585 0.869395753 0.979434449 0.208821316 0.096534672 1063.213554 2559677.368 0.032694582 0.032342472 5.61E-07 6.251087079 0.110038695 NSVLSDPGLDS(ph)PRTS(ph)PVIMAR ddPTM_HeLa_A486_30min_R1 4 NSVLSDPGLDSPRTSPVIMAR 21 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 0 NSVLS(0.001)DPGLDS(0.995)PRT(0.391)S(0.614)PVIMAR;NSVLS(0.002)DPGLDS(0.99)PRT(0.334)S(0.674)PVIMAR;NSVLSDPGLDS(1)PRT(0.15)S(0.851)PVIMAR;NSVLSDPGLDS(1)PRT(0.146)S(0.854)PVIMAR ;;; 125.99 1.77E-06 2408080000 283005 239018 171116 114552 264716 233742 338762 300967 228376 307994 TRUE FALSE FALSE 263167.8109 220077.3432 237376.6978 266682.8451 231512.8509 204905.2886 254000.1645 232443.3842 248171.8156 230870.2977 1.139894623 0.953251005 1.028182058 1.15511977 1.002783178 0.887534216 1.100185546 1.006813724 1.074940423 1 17.81672305 -4.234537302 23.80985616 1.025220261 1.139894924 0.194541935 0.071126543 8961.42377 7931131.283 0.017930902 1.429037772 5.83E-05 4.234537302 0.114674663 NSYATTENKT(ph)LPR ddPTM_HeLa_A485_30min_R1 4 NSYATTENKTLPR 13 1 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;I3L0Y9 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 NSYATTENKT(1)LPR;NSYATTENKT(1)LPR;NSYATTENKT(1)LPR;NSYATTENKT(1)LPR ;;; 195.23 5.64E-18 2659630000 1308780 917740 597220 1675110 1763220 980320 2433280 1957230 781050 2307580 TRUE FALSE FALSE 1599913.596 1025061.71 818156.5304 1766617.018 1587667.626 1031648.039 1913389.85 1477216.274 937799.5708 1732342.774 0.923554864 0.59171991 0.472283282 1.019784909 0.916485842 0.595521888 1.104509961 0.852727472 0.541347581 1 20.72429299 -5.26491375 24.99463352 0.856682417 0.655439413 0.175425998 0.197303344 526.9360964 3790786.713 0.05505481 0.085470325 5.43E-06 5.26491375 -0.201243004 NSYATTENKT(ph)LPR ddPTM_HeLa_A486_30min_R1 4 NSYATTENKTLPR 13 1 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;I3L0Y9 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 NSYATTENKT(1)LPR;NSYATTENKT(1)LPR;NSYATTENKT(1)LPR;NSYATTENKT(1)LPR ;;; 185.02 3.94E-17 2675780000 1131310 1111720 625085 971730 1232580 1559720 2582320 2137530 926550 2012730 TRUE FALSE FALSE 1052011.011 1023623.258 867134.6524 2262236.549 1077978.323 1367297.604 1936196.223 1650861.081 1006864.1 1508729.307 0.69728281 0.67846714 0.574745018 1.499431699 0.714494189 0.906257735 1.283329099 1.094206279 0.667359012 1 20.52490255 NSYNNSQAPS(ph)PGLGSK ddPTM_HeLa_A485_30min_R1 4 NSYNNSQAPSPGLGSK 16 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 NSYNNSQAPS(1)PGLGSK;NSYNNS(0.02)QAPS(0.98)PGLGSK;NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK ;;; 290.57 2.26E-67 821080000 732970 665200 457170 1102890 1060910 683640 1332150 1156770 561990 1580940 TRUE FALSE FALSE 896016.6478 742989.3535 626296.2074 1163138.088 955282.0753 719434.3333 1047525.27 873070.3438 674776.2381 1186840.753 0.754959455 0.626022785 0.527700288 0.980028774 0.804894905 0.60617596 0.882616532 0.735625518 0.568548254 1 20.17869494 -11.39769065 2.365041925 3.405716822 0.72419948 0.275244754 0.135845697 9514921.644 893468.1259 125532381.8 0.036441723 4.00E-12 11.39769065 -2.681517342 NSYNNSQAPS(ph)PGLGSK ddPTM_HeLa_A486_30min_R1 4 NSYNNSQAPSPGLGSK 16 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK;NSYNNS(0.001)QAPS(0.999)PGLGSK ;;; 317.27 2.29E-78 437960000 1179660 973860 479820 615960 940190 1237640 1711550 1536620 860200 1874600 TRUE FALSE FALSE 1096971.926 896687.7869 665619.154 1433986.009 822262.6033 1084952.56 1283302.087 1186765.17 934762.8286 1405187.958 0.780658501 0.638126581 0.473686919 1.020494091 0.585162005 0.772104937 0.913260094 0.844559735 0.665222629 1 20.42233169 -14 0.070399547 1.87921946 0.432048501 0.226765748 0.150307246 450.6622242 2.278100849 64.16542988 7.885866162 1.00E-14 14 -1.447170959 NT(ph)FVGTPFWMAPEVIK ddPTM_HeLa_A485_30min_R1 1 NTFVGTPFWMAPEVIK 16 0 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;O00506-3;O00506-2;O00506 B4DR80 STK24;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 25 1 0 NT(1)FVGTPFWMAPEVIK 114.59 0.00066799 12781000 17130 10379 9891.4 17835 18131 11567 25734 21434 8552.3 23136 TRUE FALSE FALSE 20940.5094 11592.73376 13550.64048 18809.28089 16325.81398 12172.63023 20235.72067 16177.27789 10268.66816 17368.62099 1.205651814 0.667452746 0.78017941 1.08294613 0.939960288 0.70084034 1.165073536 0.931408308 0.591219543 1 14.08419559 NT(ph)PHRGSSAGGGGSGAAAATAATAGGQHR ddPTM_HeLa_A486_30min_R1 1 NTPHRGSSAGGGGSGAAAATAATAGGQHR 29 1 C9JLG5;C9JA65;O00458 C9JLG5 IFRD1 Interferon-related developmental regulator 1 1 0 NT(0.48)PHRGS(0.48)S(0.039)AGGGGSGAAAATAATAGGQHR 195.94 1.53E-21 26251000 17556 13666 10621 1276.8 14306 13946 16140 15135 14179 10306 TRUE FALSE FALSE 16325.41506 12583.05639 14733.73564 2972.454926 12511.60808 12225.48431 12101.60129 11689.09089 15408.04714 7725.310519 2.113237393 1.628809141 1.907203031 0.384768343 1.619560541 1.582523354 1.566487361 1.513090104 1.994489037 1 12.91537721 -4.49967511 1.802230748 1.434869992 2.124917219 0.185796661 0.433946124 0.991532574 4.685707375 0.121398922 0.995242325 3.16E-05 4.49967511 0.690047227 NT(ph)PSQHSHS(ph)IQHSPER ddPTM_HeLa_A486_30min_R1 1 NTPSQHSHSIQHSPER 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 NT(0.998)PS(0.002)QHSHS(0.726)IQHS(0.274)PER 209.24 2.60E-25 893910000 480920 470660 359680 38196 479020 342640 426050 374070 450640 166670 TRUE FALSE FALSE 447209.9915 433363.1875 498957.7286 88922.21832 418936.8449 300368.5605 319447.7837 288902.4269 489701.838 124934.7472 3.579548537 3.468716249 3.993746655 0.711749296 3.35324523 2.404203533 2.556917038 2.312426554 3.919660856 1 16.93081525 NT(ph)PSQHSHSIQHS(ph)PER ddPTM_HeLa_A485_30min_R1 6 NTPSQHSHSIQHSPER 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 NT(0.947)PS(0.053)QHSHSIQHS(1)PER;NT(0.999)PS(0.001)QHSHSIQHS(1)PER;NT(0.995)PS(0.005)QHSHSIQHS(1)PER;NT(0.994)PS(0.006)QHSHSIQHS(1)PER;NT(0.989)PS(0.011)QHSHSIQHS(1)PER;NT(0.995)PS(0.009)QHS(0.191)HS(0.167)IQHS(0.637)PER ;;;;; 223.57 3.67E-34 6280942000 1320970 2088580 1966887 686592.3 2803543 1173191 1826961 1527723 1458653.5 1332696 TRUE FALSE FALSE 1614815.219 2332821.263 2694520.35 724099.0988 2524412.415 1234617.467 1436615.857 1153046.539 1751391.878 1000479.414 1.614041426 2.331703412 2.693229179 0.723752122 2.523202757 1.234025858 1.435927454 1.152494018 1.750552639 1 19.93226005 -5.998515291 0.715710458 1.275445126 2.136490776 0.222274348 0.562860801 1.107211244 1.261913993 0.365636809 0.491097194 1.00E-06 5.998515291 0.86104565 NT(ph)PSQHSHSIQHS(ph)PER ddPTM_HeLa_A486_30min_R1 8 NTPSQHSHSIQHSPER 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 NT(0.991)PS(0.009)QHSHSIQHS(1)PER;NT(0.996)PS(0.004)QHSHSIQHS(1)PER;NT(0.992)PS(0.008)QHSHSIQHS(1)PER;NT(0.995)PS(0.005)QHSHS(0.002)IQHS(0.998)PER;NT(0.996)PS(0.004)QHSHS(0.003)IQHS(0.997)PER;NT(0.998)PS(0.002)QHS(0.013)HS(0.009)IQHS(0.978)PER;NT(0.982)PS(0.018)QHS(0.037)HS(0.03)IQHS(0.933)PER;NT(0.983)PS(0.02)QHS(0.298)HS(0.229)IQHS(0.469)PER ;;;;;;; 268.31 1.44E-51 4711883000 2327189 2312665 1766937.8 109458.2 2290071 1649584.8 1943599 1637162 1953654.2 827030.4 TRUE FALSE FALSE 2164065.069 2129401.003 2451143.436 254824.2213 2002828.941 1446075.799 1457289.973 1264415.952 2122998.519 619936.6048 3.490784464 3.434868963 3.953861439 0.411048838 3.2306996 2.332618832 2.350708059 2.039589116 3.42454132 1 19.24176117 NTAAEEHVAQGDATLEHSTNLDSS(ph)PSLSSVTVVPLR ddPTM_HeLa_A486_30min_R1 1 NTAAEEHVAQGDATLEHSTNLDSSPSLSSVTVVPLR 36 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 NTAAEEHVAQGDATLEHSTNLDS(0.185)S(0.626)PS(0.185)LS(0.004)S(0.001)VTVVPLR 125.02 2.25E-06 327450000 44428 65590 74554 2658.7 81368 33822 43306 45516 66967 32114 TRUE FALSE FALSE 41313.82663 60392.40953 103423.3054 6189.587963 71162.06671 29649.38552 32470.38076 35153.00041 72771.75348 24072.44537 1.716228908 2.508777508 4.296335658 0.257123357 2.956162767 1.231673187 1.348860918 1.46030035 3.023031202 1 14.55509508 -5.264067604 24.99999604 1.659518911 2.807280307 0.244286756 0.987834135 347.3542354 3304084.659 0.267507132 0.4182808 5.44E-06 5.264067604 1.147761395 NTADHDES(ph)PPRT(ph)PTGNAPS(ph)SESDIDISSPNVSHDESIAK ddPTM_HeLa_A486_30min_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 3 0 NT(0.048)ADHDES(0.955)PPRT(0.952)PT(0.046)GNAPS(0.369)S(0.34)ES(0.288)DIDIS(0.002)S(0.001)PNVSHDESIAK 93.219 3.91E-05 93126000 37424 35912 20531 10709 34039 40254 50353 43084 29997 44416 TRUE FALSE FALSE 34800.77086 33066.20233 28481.15304 24931.0932 29769.51122 35287.87075 37754.14682 33274.71372 32597.16411 33293.9445 1.045258271 0.993159652 0.855445441 0.748817648 0.894141913 1.059888556 1.133964371 0.999422394 0.979071858 1 15.02297218 -6.25815204 24.44884959 1.040651772 0.900438411 0.360623781 0.084169294 250.519802 1863187.111 0.031731038 0.030490886 5.52E-07 6.25815204 -0.140213361 NTADHDES(ph)PPRT(ph)PTGNAPSSES(ph)DIDISSPNVSHDESIAK ddPTM_HeLa_A486_30min_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 3 0 NTADHDES(1)PPRT(0.994)PT(0.006)GNAPS(0.234)S(0.198)ES(0.568)DIDISSPNVSHDESIAK 195.72 1.33E-22 151690000 1745.1 0 0 0 0 0 0 2319.5 0 0 TRUE FALSE FALSE 1622.777502 0 0 0 0 0 0 1791.400484 0 0 0 NTADHDES(ph)PPRT(ph)PTGNAPSSESDIDISSPNVSHDESIAK ddPTM_HeLa_A485_30min_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 0 NTADHDES(0.991)PPRT(0.974)PT(0.035)GNAPSSESDIDISSPNVSHDESIAK 139.81 2.84E-06 309190000 27552 28213 20194 35079 34654 27801 54629 42052 21293 46579 TRUE FALSE FALSE 33680.84735 31512.26493 27664.60094 36995.27695 31203.72608 29256.61737 42957.06787 31738.68107 25566.30979 34967.71252 0.963198474 0.901181766 0.791147002 1.057983902 0.892358231 0.836675186 1.228478067 0.907656772 0.731140471 1 15.0937358 -5.255334732 24.96849376 0.951168588 0.886776365 0.049424108 0.13143837 1871.170277 7653205.049 0.036739903 0.061555341 5.55E-06 5.255334732 -0.064392224 NTADHDES(ph)PPRT(ph)PTGNAPSSESDIDISSPNVSHDESIAK ddPTM_HeLa_A486_30min_R1 2 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 0 NT(0.181)ADHDES(0.819)PPRT(0.857)PT(0.143)GNAPSSESDIDISSPNVSHDESIAK;NTADHDES(0.999)PPRT(0.987)PT(0.014)GNAPSSESDIDISSPNVSHDESIAK ; 213.75 1.14E-30 784900000 238390 200479 127512 53555 207703 248622 324817 258126 196840 298558 TRUE FALSE FALSE 221680.092 184592.3139 176888.0613 124678.7465 181650.953 217949.5454 243544.351 199356.3447 213902.2497 223797.1335 0.990540355 0.824819831 0.790394669 0.557106092 0.811676853 0.973871032 1.088237133 0.890790429 0.955786369 1 17.77183203 -6.238422743 5.109993179 0.982360991 0.781552538 0.426410629 0.108162526 0.194393891 15.01593071 0.039426721 0.038009157 5.78E-07 6.238422743 -0.200808454 NTAPS(ph)PGPSVIR ddPTM_HeLa_A485_30min_R1 2 NTAPSPGPSVIR 12 0 Q9H7P9;Q9H7P9-2;E7ESZ3;M0QX05 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 NT(0.003)APS(0.996)PGPS(0.001)VIR;NTAPS(1)PGPSVIR ; 123.72 4.65E-05 375350000 482100 543880 432330 619150 710670 442060 648430 659980 456470 770610 TRUE FALSE FALSE 589341.4818 607482.0349 592266.8578 652972.5967 639913.1995 465205.578 509887.6333 498118.8702 548079.342 578511.109 1.018721115 1.050078426 1.023777847 1.128712287 1.106138135 0.804142861 0.881379157 0.861035964 0.9473964 1 19.14198514 -6.252470857 24.94657253 0.88901739 1.065825116 0.672580399 0.057952484 361.2453601 1004829.929 0.019251185 0.018984827 5.59E-07 6.252470857 0.176807725 NTAPS(ph)PGPSVIR ddPTM_HeLa_A486_30min_R1 2 NTAPSPGPSVIR 12 0 Q9H7P9;Q9H7P9-2;E7ESZ3;M0QX05 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 NTAPS(0.993)PGPS(0.007)VIR;NTAPS(1)PGPSVIR ; 152 1.05E-07 898970000 1022780 993660 697550 366750 979350 922500 1120130 1139600 862020 1168660 TRUE FALSE FALSE 951088.4036 914918.7628 967660.041 853812.5345 856510.7909 808691.3293 839861.6265 880137.9573 936740.5877 876019.9293 1.085692656 1.044404051 1.10460962 0.974649669 0.977729801 0.923142616 0.958724338 1.004700838 1.069314243 1 19.74060417 -5.269744157 24.94266673 0.982878418 1.074852303 0.546504765 0.037969242 463.7819267 1392927.371 0.011425659 0.01727555 5.37E-06 5.269744157 0.091973885 NTAS(ph)LNSR ddPTM_HeLa_A485_30min_R1 2 NTASLNSR 8 0 C9JXI9;C9JSG7;C9JJM9;C9JD81;C9J3W7;C9JBN7;C9JEW7;C9J718;C9JF32;A0A0C4DG23;A0A3B3ITR4;O00522-3;O00522 C9JXI9 KRIT1 Krev interaction trapped protein 1 1 0 NT(0.008)AS(0.992)LNSR;NT(0.019)AS(0.981)LNSR ; 93.477 0.0033618 341590000 993930 1255580 1265890 1170640 1527970 1176850 1517870 1504250 1079850 1598200 TRUE FALSE FALSE 1215026.299 1402409.159 1734195.389 1234589.099 1375839.942 1238468.046 1193564.675 1135330.329 1296565.99 1199798.153 1.012692257 1.16887091 1.44540595 1.028997333 1.146726171 1.032230333 0.994804561 0.946267775 1.080653431 1 20.19436028 -6.035514284 1.486862635 1.001774732 1.19190202 0.306952871 0.113691922 0.478788642 2.157594359 0.047915282 0.05197647 9.21E-07 6.035514284 0.190127288 NTAS(ph)LNSR ddPTM_HeLa_A486_30min_R1 1 NTASLNSR 8 0 C9JXI9;C9JSG7;C9JJM9;C9JD81;C9J3W7;C9JBN7;C9JEW7;C9J718;C9JF32;A0A0C4DG23;A0A3B3ITR4;O00522-3;O00522 C9JXI9 KRIT1 Krev interaction trapped protein 1 1 0 NT(0.005)AS(0.995)LNS(0.001)R 87.568 0.0043783 121060000 253360 297990 273360 92278 331330 253990 306830 284280 307460 307140 TRUE FALSE FALSE 235600.7724 274376.1871 379212.3128 214827.8475 289771.5019 222655.2962 230057.8887 219555.6498 334110.8804 230230.1449 1.023327212 1.191747446 1.647101048 0.933100431 1.258616686 0.967098797 0.999251809 0.953635546 1.451203884 1 17.81271722 NTDDDRPPRR ddPTM_HeLa_A485_30min_R1 6 NTDDDRPPRR 10 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;;;; ;;;;; 146.71 4.01E-06 519451000 406977 532453 439682 481728 647324 461990 707136 709449 445277 668042 FALSE FALSE TRUE 497507.6296 594718.7466 602338.6685 508043.5808 582874.1497 486179.082 556050.6168 535455.5204 534640.0096 501511.4238 0.992016544 1.185852841 1.201046756 1.013024942 1.16223504 0.969427732 1.108749652 1.067683596 1.06605749 1 18.93592304 -5.810492831 1.543607441 1.054927128 1.121760482 0.10733971 0.075897111 0.845740999 4.186457262 0.027848523 0.03634301 1.55E-06 5.810492831 0.066833353 NTDDDRPPRR ddPTM_HeLa_A486_30min_R1 6 NTDDDRPPRR 10 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;;;; ;;;;; 138.76 1.99E-05 300465500 385402 320863 289782 172182.1 384762 380325 462626 407745 344787 475994 FALSE FALSE TRUE 358387.31 295436.6473 401993.351 400848.6304 336501.5622 333404.3684 346872.0816 314910.3645 374673.4148 356802.0042 1.004443097 0.828012858 1.126656651 1.123448371 0.943104462 0.934424035 0.972169656 0.882591355 1.050087753 1 18.44476419 NTDSWAPPLEIVNHRS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 NTDSWAPPLEIVNHRSPSR 19 1 Q9NRR4;H0YB67 Q9NRR4 DROSHA Ribonuclease 3 1 0 NTDSWAPPLEIVNHRS(0.955)PS(0.045)R;NTDSWAPPLEIVNHRS(0.967)PS(0.032)R ; 154.45 4.10E-09 271790000 68241 108958 94823 84120 172335 115000 146935 174723 107393 115963 TRUE FALSE FALSE 83420.97502 121699.6903 129901.9736 88715.2626 155176.7223 121021.2222 115541.1369 131871.9103 128945.79 87055.55824 0.958249843 1.397954281 1.492173231 1.019064887 1.782502179 1.390160773 1.327211487 1.514801731 1.481189629 1 16.40964879 -4.261448349 13.20943473 1.398168701 0.958095303 0.242756772 0.220091319 0.072349617 2205.745805 0.051384658 0.286392872 5.48E-05 4.261448349 -0.440073398 NTDSWAPPLEIVNHRS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 NTDSWAPPLEIVNHRSPSR 19 1 Q9NRR4;H0YB67 Q9NRR4 DROSHA Ribonuclease 3 1 0 NTDSWAPPLEIVNHRS(0.859)PS(0.141)R;NTDSWAPPLEIVNHRS(0.954)PS(0.046)R;NTDSWAPPLEIVNHRS(0.936)PS(0.064)R ;; 202.15 7.35E-26 895550000 174002.7 154305.2 159318.5 80985.3 314525 172343.5 269918 304582 148932.2 197224.2 TRUE FALSE FALSE 161806.0093 142077.494 221010.8899 188537.8712 275074.3417 151081.5112 202381.6615 235235.3276 161841.763 147837.9766 1.094482034 0.961035163 1.494953428 1.275300674 1.860647365 1.021939793 1.368942312 1.591169826 1.094723878 1 17.17365739 -4.754942091 24.99940746 1.365751141 1.027758494 0.184822947 0.255921989 218.4401034 840462.5507 0.062192632 0.156486127 1.76E-05 4.754942091 -0.337992647 NTDSWAPPLEIVNHRSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 NTDSWAPPLEIVNHRSPSR 19 1 Q9NRR4;H0YB67 Q9NRR4 DROSHA Ribonuclease 3 1 0 NTDSWAPPLEIVNHRS(0.435)PS(0.565)R 68.552 0.0035989 425140000 123810 195560 183370 140450 353540 211120 304620 368450 171470 200240 TRUE FALSE FALSE 151351.1074 218429.0409 251206.1937 148122.4279 318340.3162 222173.9167 239535.4485 278087.0598 205882.4562 150323.8531 1.006833608 1.453056426 1.671100018 0.985355449 2.117696624 1.47796848 1.593462671 1.849919717 1.369592728 1 17.19771443 -4.280921404 3.49109401 1.544796239 0.952073109 0.163340139 0.329442084 0.436341255 9.395486243 0.078715969 0.664234881 5.24E-05 4.280921404 -0.59272313 NTDVAQS(ph)PEAPK ddPTM_HeLa_A485_30min_R1 1 NTDVAQSPEAPK 12 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 NTDVAQS(1)PEAPK 162.64 4.35E-07 0 260440 216940 110410 391150 213050 211720 345030 249760 166810 538940 TRUE FALSE FALSE 318373.9795 242309.2459 151255.2535 412517.5341 191837.9939 222805.3318 271311.5219 188505.9684 200287.2369 404592.1765 0.786900978 0.598897507 0.373846214 1.019588509 0.474151516 0.550691152 0.670580248 0.465916 0.495034874 1 18.6261089 -10.9170408 4.250646305 1.17680468 0.601779181 0.309884406 0.177280005 0.10464973 0.002042432 0.060474678 0.040473589 1.21E-11 10.9170408 -0.575025499 NTDVAQS(ph)PEAPK ddPTM_HeLa_A486_30min_R1 1 NTDVAQSPEAPK 12 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 NTDVAQS(1)PEAPK 230.55 4.69E-31 0 277490 244350 81076 98148 149580 255350 286970 231050 199540 416400 TRUE FALSE FALSE 258039.384 224986.8161 112470.7985 228493.5041 130818.2816 223847.5132 215167.0707 178444.9588 216836.2879 312130.7297 0.826702915 0.720809567 0.360332347 0.732044244 0.419113753 0.717159485 0.689349206 0.571699425 0.69469702 1 18.25179087 -8.110474255 5.814093563 0.999995775 0.625291971 0.392510345 0.137560762 1.363633229 71.10826113 0.12999164 0.033755354 7.75E-09 8.110474255 -0.374703805 NTDVAQS(ph)PEAPKQEAPAK ddPTM_HeLa_A485_30min_R1 3 NTDVAQSPEAPKQEAPAK 18 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 NTDVAQS(1)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK ;; 282.86 1.05E-69 1555290000 1542670 1130560 684550 2863980 2062430 1497050 3108020 2963510 1183260 4548100 TRUE FALSE FALSE 1885831.619 1262769.157 937793.5315 3020431.975 1857087.228 1575433.223 2443966.137 2236704.526 1420729.428 3414342.372 0.552326455 0.36984257 0.274663004 0.884630669 0.543907736 0.4614163 0.715794103 0.655090873 0.416106317 1 21.7031763 -14 0.173197653 2.743681685 0.445127701 0.394416708 0.169267606 142.0219234 1.348348286 85.57979382 0.599618845 1.00E-14 14 -2.298553984 NTDVAQS(ph)PEAPKQEAPAK ddPTM_HeLa_A486_30min_R1 3 NTDVAQSPEAPKQEAPAK 18 1 Q9P2E9;A0A087WVV2;Q9P2E9-3;V9GY78 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 NTDVAQS(1)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK ;; 246.34 6.23E-46 1799700000 1825870 1297430 569143 1012270 1312460 1912270 2795910 2521840 1316280 3125650 TRUE FALSE FALSE 1697885.942 1194616.922 789530.4118 2356615.717 1147839.029 1676353.57 2096343.746 1947672.083 1430376.21 2342966.895 0.724673466 0.509873581 0.336978902 1.005825444 0.489908343 0.71548325 0.894738953 0.831284508 0.610497832 1 21.15990514 -7.462581938 0.086644689 1.398704457 0.142580538 0.258858083 0.184279149 17.2424194 1.526300404 10.49553592 10.3839547 3.45E-08 7.462581938 -1.256123919 NTEES(ph)SSPVRK ddPTM_HeLa_A486_30min_R1 2 NTEESSSPVRK 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEES(0.428)S(0.145)S(0.428)PVRK;NTEES(0.514)S(0.243)S(0.243)PVRK ; 136.8 4.97E-05 1193200000 2624900 2487400 1381540 1195460 2543600 2745500 3480600 3073000 2112900 3518600 TRUE FALSE FALSE 2440908.065 2290289.365 1916509.287 2783091.295 2224557.97 2406788.124 2609717.066 2373344.983 2296047.873 2637519.658 0.925455876 0.868349685 0.726633176 1.055192627 0.843428015 0.912519502 0.989458812 0.899839732 0.87053299 1 21.33075042 -5.258583153 24.99943454 0.931590043 0.842966602 0.259414295 0.075604794 383.3476434 3355280.301 0.020461752 0.033525191 5.51E-06 5.258583153 -0.088623442 NTEESS(ph)SPVRK ddPTM_HeLa_A485_30min_R1 1 NTEESSSPVRK 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEES(0.018)S(0.491)S(0.491)PVRK 71.031 0.0075914 91392000 51509 52692 42349 66806 71402 54496 79246 80492 42134 88901 TRUE FALSE FALSE 62966.99935 58853.87104 58015.65739 70455.44262 64292.96617 57349.32629 62314.44472 60751.21079 50589.90732 66739.6168 0.943472593 0.881843107 0.869283645 1.055676463 0.963340355 0.859299604 0.933694973 0.910272095 0.758019146 1 16.02625578 -6.255942192 24.77436185 0.889239033 0.941536206 0.102829643 0.074224396 1016.425568 4580760.497 0.025293194 0.024608196 5.55E-07 6.255942192 0.052297173 NTEESSS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 NTEESSSPVR 10 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEESS(0.002)S(0.998)PVR 153.75 2.63E-06 333450000 529150 610010 527360 674460 733980 481080 705870 687070 524820 844640 TRUE FALSE FALSE 646857.592 681345.3631 722452.4093 711304.042 660902.374 506268.6049 555055.1081 518565.0052 630146.5601 634086.7924 1.02014046 1.074530129 1.139358867 1.121777098 1.042290081 0.798421621 0.875361409 0.81781392 0.993785973 1 19.2743208 -6.102445488 5.312323299 0.885195072 1.090578873 0.646749272 0.067776815 0.132531079 5.566228052 0.022234281 0.022391349 7.90E-07 6.102445488 0.205383801 NTEESSS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 NTEESSSPVR 10 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEESS(0.003)S(0.996)PVR;NTEESS(0.004)S(0.996)PVR ; 159.77 6.75E-07 690140000 1610810 1653820 1323280 528790 1618310 1760980 1674850 1621550 1743230 1754210 TRUE FALSE FALSE 1497900.537 1522765.28 1835689.455 1231049.844 1415326.47 1543728.192 1255784.815 1252358.463 1894334.58 1314944.398 1.139136027 1.158045376 1.39602059 0.936199162 1.076339404 1.173987428 0.955009822 0.952404121 1.44061953 1 20.32657037 -5.269697693 24.98306946 1.073392473 1.223765139 0.173116358 0.154595594 1090.43097 3298774.297 0.042759994 0.064609747 5.37E-06 5.269697693 0.150372666 NTEESSS(ph)PVRK ddPTM_HeLa_A485_30min_R1 5 NTEESSSPVRK 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEES(0.001)S(0.026)S(0.973)PVRK;NTEES(0.027)S(0.145)S(0.828)PVRK;NTEES(0.001)S(0.029)S(0.97)PVRK;NTEES(0.003)S(0.016)S(0.981)PVRK;NTEES(0.043)S(0.125)S(0.832)PVRK ;;;; 147.56 4.72E-07 13066410000 4205010 4334560 3648870 6240080 6385280 4955240 7616940 7126460 4401750 8965950 TRUE FALSE FALSE 5140399.967 4841449.086 4998738.855 6580959.77 5749539.103 5214688.704 5989518.544 5378684.511 5285140.85 6730903.671 0.763701312 0.71928664 0.742654939 0.977723065 0.854200176 0.774738276 0.889853553 0.79910288 0.785205243 1 22.68236878 -14 0.16232805 1.648866764 0.768750135 0.371778854 0.073153188 163.0995964 1.507809158 34.57963031 0.325073136 1.00E-14 14 -0.880116628 NTEESSS(ph)PVRK ddPTM_HeLa_A486_30min_R1 5 NTEESSSPVRK 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEES(0.005)S(0.024)S(0.97)PVRK;NTEES(0.001)S(0.041)S(0.959)PVRK;NTEESS(0.004)S(0.996)PVRK;NT(0.003)EES(0.034)S(0.225)S(0.738)PVRK;NTEES(0.041)S(0.406)S(0.553)PVRK ;;;; 156.2 1.75E-07 7933000000 5529420 5186000 3049166 2649369 5037280 5790430 7030860 6672960 4514898 7782060 TRUE FALSE FALSE 5141836.212 4775042.473 4229884.735 6167864.924 4405457.372 5076065.619 5271664.463 5153672.678 4906252.994 5833381.523 0.881450355 0.818571947 0.725117107 1.057339538 0.755215025 0.870175489 0.903706442 0.883479446 0.841064994 1 22.475901 -14 0.19682302 1.622567093 0.83615285 0.196772187 0.085477639 228.3790729 2.252135632 55.87980597 0.207889663 1.00E-14 14 -0.786414243 NTENCDFLFS(ph)PPEVTGR ddPTM_HeLa_A485_30min_R1 4 NTENCDFLFSPPEVTGR 17 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7;F8WC55 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 NTENCDFLFS(1)PPEVTGR;NTENCDFLFS(1)PPEVTGR;NTENCDFLFS(1)PPEVTGR;NTENCDFLFS(0.999)PPEVT(0.001)GR ;;; 192.46 4.09E-18 369040000 431088 430335 452355 556089 789870 375531 573349 454633 445448 741140 TRUE FALSE FALSE 526982.0384 480658.9348 619699.9386 586466.734 711227.7694 395193.2225 450848.3023 343133.5439 534845.3277 556387.4377 0.947149419 0.863892501 1.113792111 1.054061782 1.27829588 0.71028423 0.81031359 0.616716915 0.961282178 1 19.08573032 -6.285338573 24.98791164 0.795176319 1.044629005 0.383620312 0.145075219 795.0774997 831294.0698 0.051214364 0.045189298 5.18E-07 6.285338573 0.249452686 NTENCDFLFS(ph)PPEVTGR ddPTM_HeLa_A486_30min_R1 3 NTENCDFLFSPPEVTGR 17 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7;F8WC55 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 NTENCDFLFS(1)PPEVTGR;NTENCDFLFS(1)PPEVTGR;NTENCDFLFS(1)PPEVTGR ;; 184.15 1.17E-17 342050000 286835 368247 271575 156343 405818 365510 441600 429660 319330 392597 TRUE FALSE FALSE 266729.3477 339065.7666 376736.113 363974.4051 354916.5223 320417.0924 331107.0092 331835.7974 347009.7815 294288.1558 0.906354342 1.152155667 1.280160637 1.23679597 1.206017012 1.088786912 1.125111571 1.127588015 1.179149669 1 18.16686995 -6.270901803 24.28534983 1.113413008 1.167420176 0.051708759 0.10272758 1590.565735 4082184.083 0.037556635 0.033544985 5.36E-07 6.270901803 0.054007168 NTETSKS(ph)PEKDVPMVEK ddPTM_HeLa_A485_30min_R1 3 NTETSKSPEKDVPMVEK 17 2 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 NT(0.001)ET(0.055)S(0.055)KS(0.89)PEKDVPMVEK;NTET(0.003)S(0.018)KS(0.979)PEKDVPMVEK;NT(0.001)ET(0.03)S(0.03)KS(0.938)PEKDVPMVEK ;; 133.38 6.71E-06 2289200000 1696710 746730 408805 5450750 1546600 947469 2833820 1932530 758175 6744350 TRUE FALSE FALSE 2074137.286 834053.5778 560038.9813 5748510.67 1392615.074 997077.0118 2228351.207 1458573.987 910333.7681 5063107.666 0.409656958 0.164731551 0.110611707 1.135371999 0.275051444 0.196929846 0.440115311 0.288078801 0.179797434 1 22.27159173 -10.17922509 4.369751751 1.000165256 0.359174289 0.323360405 0.279607708 775769284 1669720436 1812302.176 0.070977002 6.62E-11 10.17922509 -0.640990968 NTETSKS(ph)PEKDVPMVEK ddPTM_HeLa_A486_30min_R1 4 NTETSKSPEKDVPMVEK 17 2 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 NTET(0.007)S(0.062)KS(0.931)PEKDVPMVEK;NTET(0.007)S(0.03)KS(0.963)PEKDVPMVEK;NTET(0.01)S(0.493)KS(0.496)PEKDVPMVEK;NTETS(0.111)KS(0.888)PEKDVPMVEK ;;; 177.87 1.92E-13 3016940000 1736880 1270070 296725 1780430 897930 2340600 3691400 2971080 1184290 4588490 TRUE FALSE FALSE 1615133.681 1169425.028 411624.8666 4144931.018 785303.2465 2051840.569 2767772.676 2294629.942 1286945.211 3439502.238 0.469583553 0.339998333 0.119675708 1.205096183 0.228318865 0.596551602 0.804701519 0.667140122 0.374166121 1 21.71376836 -14 0.069341626 2.470803848 5.07E-12 0.196747023 0.293612385 533.4312338 2.660328532 128.0602401 16.2287232 1.00E-14 14 -2.470803848 NTETSKS(ph)PEKDVPMVEKK ddPTM_HeLa_A486_30min_R1 2 NTETSKSPEKDVPMVEKK 18 3 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 NTET(0.027)S(0.027)KS(0.946)PEKDVPMVEKK;NT(0.012)ET(0.159)S(0.159)KS(0.669)PEKDVPMVEKK ; 158.77 3.77E-09 2029380000 1630800 840720 188956 1846480 671800 1697540 3383170 2758240 691380 5007500 TRUE FALSE FALSE 1516489.341 774098.2854 262124.8236 4298698.756 587536.5797 1488114.774 2536665.082 2130248.964 751309.3751 3753589.407 0.404010449 0.206228812 0.06983311 1.145223489 0.156526598 0.396451133 0.675797166 0.567523171 0.200157581 1 21.83983942 -14 0.220921322 3.8115084 0.363606856 0.238399891 0.302028957 232.9363091 2.33155003 292.8126652 0.575596817 1.00E-14 14 -3.447901544 NTFTAWS(ph)DEES(ph)DYEIDDRDVNK ddPTM_HeLa_A485_30min_R1 3 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 NTFT(0.003)AWS(0.997)DEES(1)DYEIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK ;; 206.16 5.97E-27 2488570000 776570 634230 519160 1339040 1146140 701150 1352990 1255690 630990 1743480 TRUE FALSE FALSE 949315.3174 708397.6814 711218.8881 1412188.365 1032026.277 737861.1298 1063912.634 947730.0587 757623.9052 1308862.522 0.72529796 0.541231542 0.543387007 1.078943235 0.788490968 0.56374227 0.812852852 0.724086787 0.578841469 1 20.31988214 -11.20822743 2.500470816 1.963449925 0.709510498 0.238098512 0.157511083 14985007.94 4752877.208 81109870.73 0.040797201 6.19E-12 11.20822743 -1.253939427 NTFTAWS(ph)DEES(ph)DYEIDDRDVNK ddPTM_HeLa_A486_30min_R1 5 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 NTFTAWS(1)DEES(1)DYEIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK;NTFT(0.001)AWS(0.999)DEES(1)DYEIDDRDVNK;NT(0.001)FT(0.026)AWS(0.973)DEES(1)DYEIDDRDVNK;NTFTAWS(1)DEES(1)DYEIDDRDVNK ;;;; 231.07 1.64E-36 4581590000 3754920 3484810 1685264 2506810 3336040 4244730 5858390 5275170 2909910 6067900 TRUE FALSE FALSE 3491719.498 3208660.964 2337843.354 5835980.367 2917602.756 3721058.37 4392558.858 4074128.947 3162143.342 4548458.345 0.767670985 0.705439233 0.513985878 1.283067784 0.641448714 0.818092217 0.965724763 0.895716447 0.695212114 1 22.11694621 NTFTAWS(ph)DEESDYEIDDR ddPTM_HeLa_A485_30min_R1 1 NTFTAWSDEESDYEIDDR 18 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 NTFTAWS(1)DEESDYEIDDR 277.14 4.04E-69 176170000 61643 84289 54786 61035 68726 51942 58985 71381 57956 66848 TRUE FALSE FALSE 75355.27268 94145.86533 75053.62124 64369.1875 61883.39813 54661.6028 46382.37289 53874.69783 69587.2376 50184.02385 1.501578927 1.876012685 1.495568021 1.282662939 1.233129458 1.089223195 0.924245792 1.073542807 1.386641251 1 15.61494053 -5.337975221 1.531355866 1.101085306 1.696692433 0.711022235 0.147018664 0.213033616 0.977906576 0.049001253 0.101708052 4.59E-06 5.337975221 0.595607127 NTFTAWS(ph)DEESDYEIDDR ddPTM_HeLa_A486_30min_R1 4 NTFTAWSDEESDYEIDDR 18 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 NTFTAWS(1)DEESDYEIDDR;NTFTAWS(1)DEESDYEIDDR;NTFTAWS(1)DEESDYEIDDR;NTFTAWS(1)DEESDYEIDDR ;;; 269.41 1.07E-57 190291000 218685 227703 115086 70354 143592 169949 216559 149207.4 186341.5 277210 TRUE FALSE FALSE 203356.3108 209658.985 159650.3813 163787.6675 125581.3524 148982.4203 162373.6477 115236.1322 202493.7313 207794.8117 0.978639982 1.008971222 0.768307832 0.788218273 0.604352685 0.716968913 0.781413387 0.554566937 0.97448887 1 17.66480011 -4.783259231 6.389544561 0.749571291 0.994963323 0.292701731 0.132930338 0.15150688 21.91221253 0.032689172 0.073568547 1.65E-05 4.783259231 0.245392032 NTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_HeLa_A485_30min_R1 1 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 NTFTAWS(0.998)DEES(0.002)DYEIDDRDVNK 199.03 4.65E-27 177250000 58490 58268 44649 105420 96724 62916 108300 110630 61813 149080 TRUE FALSE FALSE 71500.89871 65081.93574 61166.5231 111178.8277 87093.81894 66210.18447 85160.82027 83497.81904 74218.30212 111917.0996 0.638873764 0.581519142 0.546534205 0.993403403 0.778199393 0.591600253 0.760927692 0.746068468 0.663154267 1 16.77207095 -14 0.189449651 2.231923615 0.650367423 0.349774778 0.123205763 171.082338 1.671735476 79.94471194 0.362083461 1.00E-14 14 -1.581556192 NTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_HeLa_A486_30min_R1 4 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 NT(0.013)FT(0.032)AWS(0.947)DEES(0.008)DYEIDDRDVNK;NT(0.048)FT(0.048)AWS(0.897)DEES(0.007)DYEIDDRDVNK;NTFTAWS(1)DEESDYEIDDRDVNK;NTFTAWS(1)DEESDYEIDDRDVNK ;;; 295.3 1.18E-87 7057450000 652010 554540 322888 336223 603370 662120 822840 816040 518470 857360 TRUE FALSE FALSE 606307.466 510596.2308 447918.8808 782744.1358 527689.7084 580434.3663 616956.7289 630245.506 563411.3971 642671.4755 0.943417421 0.794490265 0.696963998 1.217953753 0.821087801 0.90315875 0.959987727 0.98066513 0.876670925 1 19.29372192 -5.16720082 23.44432464 0.956158856 0.809912428 0.27557904 0.113696135 44.16478867 10982.47515 0.030009618 0.05197858 6.80E-06 5.16720082 -0.146246428 NTGNGTQSSMGS(ph)PLTRPTPR ddPTM_HeLa_A485_30min_R1 3 NTGNGTQSSMGSPLTRPTPR 20 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4I5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 NTGNGTQSSMGS(1)PLTRPTPR;NTGNGT(0.011)QS(0.049)S(0.038)MGS(0.9)PLT(0.001)RPTPR;NT(0.002)GNGT(0.014)QS(0.056)S(0.047)MGS(0.877)PLT(0.005)RPTPR ;; 176.14 1.90E-14 843710000 87759 108323 85964 118745 151066 102107 136730 144229 85300 182002 TRUE FALSE FALSE 107280.6868 120990.4326 117765.6609 125231.7387 136025.3386 107453.1646 107516.5185 108856.6116 102418.9276 136632.2509 0.785178361 0.885518842 0.861917008 0.916560606 0.99555806 0.786440712 0.786904393 0.796712423 0.749595552 1 17.05993853 NTGNGTQSSMGS(ph)PLTRPTPR ddPTM_HeLa_A486_30min_R1 6 NTGNGTQSSMGSPLTRPTPR 20 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4I5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 NTGNGTQSSMGS(0.968)PLT(0.032)RPTPR;NTGNGTQSSMGS(1)PLTRPTPR;NTGNGTQSSMGS(1)PLTRPTPR;NTGNGTQSSMGS(1)PLTRPTPR;NTGNGTQS(0.001)S(0.015)MGS(0.981)PLT(0.003)RPTPR;NT(0.022)GNGT(0.059)QS(0.059)S(0.047)MGS(0.811)PLT(0.002)RPTPR ;;;;; 232.96 1.75E-37 1234737000 574145 449470 303104 265105 511980 479326 619705 593500 397995 725643 TRUE FALSE FALSE 533900.4004 413852.3603 420473.9862 617177.8377 447762.6944 420191.6315 464648.2544 458373.006 432493.5271 543937.2697 0.981547745 0.760845751 0.773019261 1.134648924 0.823188113 0.772500167 0.854231325 0.842694611 0.795116553 1 19.05308075 NTGVSPASRPSPGT(ph)PTSPSNLTSGLK ddPTM_HeLa_A485_30min_R1 1 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 NTGVS(0.003)PAS(0.04)RPS(0.141)PGT(0.503)PT(0.084)S(0.227)PS(0.001)NLTSGLK 81.532 0.0079466 224720000 66818 65573 49886 120850 97682 52467 114150 91219 59306 175560 TRUE FALSE FALSE 81681.43358 73241.19194 68340.90733 127451.7295 87956.4371 55214.09099 89760.91998 68847.39722 71208.17021 131796.1229 0.619755967 0.555715831 0.518535036 0.967037016 0.667367409 0.418935624 0.681058881 0.522378016 0.540290326 1 17.00794841 -10.0927803 5.190966979 1.000007579 0.61188971 0.41065559 0.140105079 1.27E-05 2.23E-06 0.140639758 0.034109486 8.08E-11 10.0927803 -0.388117869 NTGVSPASRPSPGTPT(ph)SPSNLTSGLK ddPTM_HeLa_A486_30min_R1 1 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 NTGVSPASRPS(0.007)PGT(0.331)PT(0.439)S(0.187)PS(0.035)NLT(0.002)SGLK 174.14 3.90E-14 1109800000 501340 406850 208030 256740 360790 455890 629880 565280 379100 804450 TRUE FALSE FALSE 466198.6549 374609.7243 288584.7872 597703.6949 315536.354 399646.9269 472277.3618 436578.084 411960.6932 603010.4839 0.773118656 0.621232523 0.478573416 0.991199508 0.523268438 0.662752867 0.783199255 0.723997502 0.683173351 1 19.20182356 -13.99999998 0.260596015 3.007709665 0.666757658 0.315382389 0.135957174 234.9581864 2.3105806 252.3681154 0.176358817 1.00E-14 13.99999998 -2.340952006 NTGVSPASRPSPGTPTS(ph)PSNLTSGLK ddPTM_HeLa_A485_30min_R1 2 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 NTGVSPASRPS(0.001)PGT(0.026)PT(0.011)S(0.95)PS(0.011)NLTSGLK;NTGVSPAS(0.001)RPS(0.017)PGT(0.144)PT(0.21)S(0.622)PS(0.006)NLTSGLK ; 176.96 5.48E-15 1600010000 614300 455580 397730 985540 827190 518000 1069340 678820 516100 1435500 TRUE FALSE FALSE 750948.9157 508856.118 544866.8779 1039377.555 744832.0592 545121.679 840866.7733 512338.3307 619676.5361 1077656.268 0.696835288 0.472187777 0.50560359 0.964479663 0.691159214 0.50584003 0.780273634 0.47541906 0.575022439 1 20.03946566 -10.66358308 2.801702904 1.042306054 0.629277207 0.353887508 0.150126275 87067079.05 79789545.45 26382716.74 0.038295833 2.17E-11 10.66358308 -0.413028847 NTGVSPASRPSPGTPTS(ph)PSNLTSGLK ddPTM_HeLa_A486_30min_R1 1 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 NTGVSPASRPS(0.143)PGT(0.19)PT(0.222)S(0.417)PS(0.027)NLT(0.001)SGLK 167.97 3.89E-14 912820000 511200 438600 228850 271960 464250 543110 746780 657610 418710 760120 TRUE FALSE FALSE 475367.5198 403843.7386 317466.8488 633136.6241 406019.436 476106.6101 559927.7454 507886.5585 455004.1199 569781.0044 0.834298645 0.708770098 0.557173451 1.111192931 0.712588579 0.835595793 0.982706937 0.891371517 0.798559651 1 19.120048 -5.24706039 24.9907225 0.892429554 0.700949687 0.365765166 0.122669927 921.4592209 1601496.4 0.032701726 0.056300839 5.66E-06 5.24706039 -0.191479866 NTKEPPLSLTIHLTSPVVR ddPTM_HeLa_A486_30min_R1 1 NTKEPPLSLTIHLTSPVVR 19 1 Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EPG3;K7EKY0;K7EQR9;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 0 76.768 0.0043717 13315000 57723 53154 41100 21722 58608 46072 51917 48212 37989 42866 FALSE FALSE TRUE 53676.91578 48941.88346 57015.0207 50569.91377 51256.83814 40388.10507 38926.81748 37235.18006 41281.91711 32132.07459 1.670508875 1.523147325 1.774395878 1.573814153 1.595192305 1.256940474 1.211462938 1.158816557 1.284757291 1 14.97172651 -6.297061271 2.344516407 1.175567448 1.638219163 0.860107274 0.090390156 0.106189101 1.147992518 0.033653108 0.030338945 5.05E-07 6.297061271 0.462651714 NTLQLHR ddPTM_HeLa_A485_30min_R1 1 NTLQLHR 7 0 P61313;E7ERA2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 0 83.206 0.020299 12813000 15048 16828 19224 18105 29017 13479 22921 19961 16546 27189 FALSE FALSE TRUE 18395.37569 18795.88822 26335.75758 19094.03031 26127.9656 14184.7396 18023.7411 15065.53345 19866.63043 20411.28268 0.901235654 0.920857768 1.290254904 0.935464498 1.280074653 0.694946017 0.883028342 0.73809832 0.973316119 1 14.31707923 -6.272758369 24.99955817 0.843080825 1.062791096 0.309973228 0.154128253 880.068698 1943748.385 0.052365872 0.046584325 5.34E-07 6.272758369 0.219710271 NTMYVMMAQILRSHLIK ddPTM_HeLa_A485_30min_R1 1 NTMYVMMAQILRSHLIK 17 1 Q9NX36 Q9NX36 DNAJC28 DnaJ homolog subfamily C member 28 0 0 53.328 0.02189 61300000 70343 107290 82221 60749 124620 88814 172080 176900 51948 75389 FALSE FALSE TRUE 85990.55767 119836.6322 112637.9694 64067.56405 112212.3952 93464.16371 135313.7022 133514.9976 62373.4871 56595.90973 1.519377603 2.117408003 1.990213956 1.132017567 1.982694434 1.651429655 2.390874232 2.359092702 1.102084716 1 15.78841017 NTMYVMMAQILRSHLIK ddPTM_HeLa_A486_30min_R1 1 NTMYVMMAQILRSHLIK 17 1 Q9NX36 Q9NX36 DNAJC28 DnaJ homolog subfamily C member 28 0 0 53.328 0.02189 26932000 62457 47097 39502 18532 52822 63702 89825 79507 58712 83636 FALSE FALSE TRUE 58079.08683 43364.8622 54798.2323 43143.43256 46196.57221 55843.09491 67349.83493 61404.99173 63801.20343 62693.00122 0.926404634 0.691701806 0.874072564 0.688169839 0.736869687 0.8907389 1.074279961 0.979455291 1.01767665 1 15.93601678 -6.529715523 4.165595957 1.015003118 0.779573853 0.69303372 0.073378311 0.114400489 4.706205953 0.027215459 0.021796157 2.95E-07 6.529715523 -0.235429265 NTPS(ph)QHSHSIQHS(ph)PER ddPTM_HeLa_A485_30min_R1 3 NTPSQHSHSIQHSPER 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 NT(0.042)PS(0.95)QHS(0.007)HSIQHS(1)PER;NT(0.42)PS(0.515)QHS(0.05)HS(0.022)IQHS(0.993)PER;NT(0.276)PS(0.37)QHS(0.151)HS(0.204)IQHS(1)PER ;; 118.08 4.33E-05 166885000 59299.2 60702.7 50994.6 37207.5 46367.6 71081.3 53131.4 74579 67798.8 24765.7 TRUE FALSE FALSE 72490.10246 67801.35272 69859.6246 39240.05151 41751.07894 74803.00696 41779.44235 56288.38331 81405.39727 18592.06677 3.898980321 3.646789438 3.757496435 2.110580389 2.245639469 4.023383085 2.247165034 3.027548471 4.378501771 1 14.18239953 -5.223294342 22.32120574 2.818424722 3.755660689 0.210067282 0.917825015 273.8774967 160261.7713 0.242177653 0.419436772 5.98E-06 5.223294342 0.937235967 NTPSQHSHSIQHS(ph)PER ddPTM_HeLa_A485_30min_R1 21 NTPSQHSHSIQHSPER 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHS(0.001)HS(0.006)IQHS(0.993)PER;NTPSQHS(0.002)HS(0.13)IQHS(0.868)PER;NTPSQHSHS(0.009)IQHS(0.991)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHS(0.001)IQHS(0.999)PER;NTPSQHSHSIQHS(1)PER;NT(0.001)PS(0.001)QHSHS(0.003)IQHS(0.996)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHS(0.002)HS(0.002)IQHS(0.996)PER;NTPSQHSHSIQHS(1)PER;NT(0.036)PS(0.036)QHS(0.059)HS(0.059)IQHS(0.81)PER;NTPSQHSHSIQHS(1)PER ;;;;;;;;;;;;;;;;;;;; 301.27 5.89E-68 69492391000 2955150 6197491 5881296 1261104.1 8928576.9 3541959 5523184 5693061 4428902 2807737.8 TRUE FALSE FALSE 3612512.922 6922233.661 8057032.132 1329995.024 8039616.434 3727410.496 4343110.618 4296828.863 5317742.007 2107820.439 1.713861796 3.284071799 3.822447103 0.630981178 3.814184683 1.768371929 2.060474667 2.038517505 2.52286291 1 21.00732054 -9.922712395 0.206444696 7.67E-17 2.843054921 0.17257987 0.947251382 30.29179267 1.455587113 20.84518147 2.608532821 1.19E-10 9.922712395 2.843054921 NTPSQHSHSIQHS(ph)PER ddPTM_HeLa_A486_30min_R1 21 NTPSQHSHSIQHSPER 16 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 NTPSQHS(0.001)HS(0.007)IQHS(0.992)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHS(0.022)IQHS(0.978)PER;NTPSQHSHSIQHS(1)PER;NTPSQHS(0.001)HS(0.017)IQHS(0.982)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHS(0.003)HS(0.002)IQHS(0.995)PER;NTPSQHSHSIQHS(1)PER;NTPSQHS(0.003)HS(0.059)IQHS(0.938)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER;NTPSQHSHSIQHS(1)PER ;;;;;;;;;;;;;;;;;;;; 293.72 1.25E-67 77651459000 5018372 4607707.8 4431619.3 225918.39 6131400.8 3178054.1 3954530.4 3917413.1 4476704.8 1343857.7 TRUE FALSE FALSE 4666610.038 4242576.253 6147660.976 525949.4292 5362343.339 2785978.097 2965065.067 3025503.654 4864749.177 1007346.985 4.632574582 4.211633446 6.102823623 0.522113469 5.323233622 2.765658844 2.94343966 3.003437444 4.829268613 1 19.94212928 -7.864200087 0.123258024 4.07E-22 5.955427843 0.229444779 1.516793502 14.24328403 1.414085119 34.12573061 27.21423486 1.37E-08 7.864200087 5.955427843 NTRVQVGCRELRS(ph)TK ddPTM_HeLa_A486_30min_R1 1 NTRVQVGCRELRSTK 15 3 Q6X4U4 Q6X4U4 SOSTDC1 Sclerostin domain-containing protein 1 1 0 NTRVQVGCRELRS(0.5)T(0.5)K 67.358 0.014019 214690000 124760 105310 44112 51229 97362 129920 153610 140780 85235 181650 TRUE FALSE FALSE 116014.9683 96964.85207 61193.34776 119263.701 85149.9501 113891.7913 115175.1533 108727.4672 92623.23843 136163.6577 0.852025939 0.712119913 0.449410282 0.875884968 0.62535005 0.836433108 0.845858251 0.798505777 0.680234653 1 17.05498217 -6.279976174 24.1868546 0.820466226 0.698988254 0.189028062 0.132618402 1015.619556 1325177.955 0.04599597 0.040646316 5.25E-07 6.279976174 -0.121477972 NTS(ph)LPPLWS(ph)PEAER ddPTM_HeLa_A485_30min_R1 1 NTSLPPLWSPEAER 14 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 NT(0.016)S(0.984)LPPLWS(1)PEAER 109.42 0.00060596 65552000 87100 86164 91141 100490 138560 89310 135940 121630 86275 145830 TRUE FALSE FALSE 106475.0945 96240.13027 124857.8486 105979.5142 124764.4799 93986.1335 106895.3085 91800.05179 103589.6011 109477.2648 0.972577226 0.879087822 1.140491122 0.968050439 1.139638263 0.858499102 0.976415593 0.838530739 0.946220216 1 16.74027177 -6.288913998 24.96898243 0.917121461 1.015953598 0.233745188 0.086348387 1081.036689 982444.4989 0.029677579 0.026177828 5.14E-07 6.288913998 0.098832136 NTS(ph)LPPLWS(ph)PEAER ddPTM_HeLa_A486_30min_R1 4 NTSLPPLWSPEAER 14 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 NT(0.175)S(0.825)LPPLWS(1)PEAER;NT(0.021)S(0.979)LPPLWS(1)PEAER;NT(0.015)S(0.985)LPPLWS(1)PEAER;NT(0.006)S(0.994)LPPLWS(1)PEAER ;;; 187.57 3.06E-17 236551000 445341 434129 315563 223546 507149 463162 561310 541740 385096 586870 TRUE FALSE FALSE 414124.8956 399727.037 437757.4447 520426.3854 443537.6434 406021.7815 420864.3011 418397.6281 418476.4313 439913.9321 0.941377086 0.908648278 0.995097933 1.183018648 1.008237319 0.922957315 0.956696914 0.951089742 0.951268875 1 18.74686177 -6.21186467 11.56515292 0.953371799 1.010908441 0.116351229 0.069491394 2.692946085 624.7256381 0.025481681 0.025468428 6.14E-07 6.21186467 0.057536642 NTS(ph)PSLGESR ddPTM_HeLa_A485_30min_R1 2 NTSPSLGESR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 NT(0.154)S(0.834)PS(0.012)LGESR;NT(0.002)S(0.997)PS(0.001)LGESR ; 154.09 2.31E-06 680430000 826510 1186150 1033640 1062200 1425500 1025940 1498400 1473820 944340 1380370 TRUE FALSE FALSE 1010364.298 1324859.924 1416026.449 1120225.296 1283572.215 1079656.632 1178254.599 1112363.334 1133860.376 1036269.163 0.975001799 1.278490157 1.366465876 1.08101769 1.238647507 1.041868919 1.137015981 1.073430894 1.094175545 1 19.98296735 -6.263036933 24.99999981 1.078120055 1.196935712 0.23653071 0.105351088 225.2927313 3525557.223 0.036100429 0.033525042 5.46E-07 6.263036933 0.118815657 NTS(ph)PSLGESR ddPTM_HeLa_A486_30min_R1 2 NTSPSLGESR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 NT(0.028)S(0.918)PS(0.053)LGESR;NT(0.089)S(0.881)PS(0.03)LGESR ; 140.45 1.31E-05 540050000 2096900 1987580 1344450 818760 1941880 2072800 2601900 2314300 1638890 2545800 TRUE FALSE FALSE 1949918.138 1830076.922 1865057.046 1906114.658 1698311.303 1817079.011 1950877.1 1787384.411 1780950.305 1908315.11 1.021800922 0.959001432 0.977331802 0.998846914 0.889953286 0.952190234 1.022303439 0.936629596 0.93325798 1 20.86386798 -4.259573183 23.80024125 0.962056228 1.02180096 0.185915747 0.036657483 147.5491357 1881433.604 0.00921102 0.057490038 5.50E-05 4.259573183 0.059744732 NTSAS(ph)DEDER ddPTM_HeLa_A485_30min_R1 1 NTSASDEDER 10 0 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 NTS(0.225)AS(0.775)DEDER 193 3.81E-10 233670000 360000 433780 316800 509080 387740 396060 537170 521120 386530 643590 TRUE FALSE FALSE 440080.758 484506.7976 433997.5031 536889.7513 349135.2442 416797.0892 422399.2412 393314.5029 464103.0255 483154.8574 0.910848253 1.002798151 0.89825756 1.111216711 0.722615614 0.862657351 0.874252291 0.814054742 0.960567856 1 18.88212614 -5.759821046 24.9998336 0.862670412 0.97645838 0.256738621 0.089347642 56.56973124 873871.5613 0.02558851 0.031303931 1.74E-06 5.759821046 0.113787968 NTSAS(ph)DEDER ddPTM_HeLa_A486_30min_R1 2 NTSASDEDER 10 0 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 NTS(0.001)AS(0.999)DEDER;NTS(0.062)AS(0.938)DEDER ; 236.12 9.09E-21 304960000 570950 379960 381050 204900 390550 684730 552580 479990 574750 697330 TRUE FALSE FALSE 530929.3534 349850.5858 528602.7649 477017.5551 341563.5773 600254.9744 414318.6394 370706.7551 624569.7928 522714.0291 1.015716671 0.669296339 1.011265693 0.912578443 0.653442529 1.148342958 0.792629653 0.709196108 1.194859441 1 18.99566235 -7.770189968 24.99996828 1.097429732 0.864165355 0.252326888 0.160687008 281.9869875 805591.4636 0.139073268 0.03812026 1.70E-08 7.770189968 -0.233264377 NTSLPPLWS(ph)PEAER ddPTM_HeLa_A485_30min_R1 6 NTSLPPLWSPEAER 14 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER ;;;;; 218.66 1.20E-27 3195620000 826192 1002542 899513 979473 1422355 778549 1390743 1260973 762175 1348395 TRUE FALSE FALSE 1009975.56 1119780.566 1232280.291 1032979.13 1280740.342 819312.6218 1093599.397 951717.3946 915136.5314 1012264.942 0.997738357 1.106212929 1.217349569 1.020463208 1.265222462 0.809385555 1.080348979 0.940186067 0.90404843 1 19.94915551 -6.262041924 24.9994508 0.951402639 1.120276956 0.439299943 0.098556865 53.82496997 2233152.396 0.032273991 0.030174058 5.47E-07 6.262041924 0.168874318 NTSLPPLWS(ph)PEAER ddPTM_HeLa_A486_30min_R1 6 NTSLPPLWSPEAER 14 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER ;;;;; 252.37 1.82E-37 3487779000 1130116 948219 679295 431730 1076578 981830 1267748 1183007 809576 1175959 TRUE FALSE FALSE 1050900.704 873078.6731 942336.2162 1005089.258 941543.5485 860701.7971 950544.0415 913662.131 879750.6995 881491.2122 1.192185117 0.990456469 1.069025083 1.140214723 1.068125848 0.97641563 1.078336379 1.036496018 0.998025491 1 19.74958666 -6.012487521 24.26867057 1.023733017 1.090216644 0.319539248 0.054686417 586.1546845 1139154.47 0.017318765 0.018217746 9.72E-07 6.012487521 0.066483627 NTT(ph)ADKLAIK ddPTM_HeLa_A486_30min_R1 1 NTTADKLAIK 10 1 P38432 P38432 COIL Coilin 1 0 NT(0.082)T(0.918)ADKLAIK 109.44 0.00091919 131690000 196240 165730 64429 126810 169120 227160 344800 296870 140660 360410 TRUE FALSE FALSE 182484.5894 152596.9512 89377.63427 295220.0886 147907.3926 199135.3088 258527.3931 229279.1816 152852.5221 270160.9901 0.675466096 0.564837104 0.330831014 1.092756169 0.547478718 0.737098678 0.956938279 0.848676123 0.565783098 1 18.04345985 -5.249748484 24.98763709 0.805682716 0.527823997 0.354185199 0.183247493 884.0369316 1889500.602 0.048861337 0.083738317 5.63E-06 5.249748484 -0.27785872 NTVDLVTTCHIHS(ph)SSDDEIDFK ddPTM_HeLa_A485_30min_R1 3 NTVDLVTTCHIHSSSDDEIDFK 22 0 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YDW1 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 NTVDLVT(0.001)T(0.003)CHIHS(0.332)S(0.332)S(0.332)DDEIDFK;NTVDLVTTCHIHS(0.776)S(0.112)S(0.112)DDEIDFK;NT(0.037)VDLVT(0.098)T(0.098)CHIHS(0.57)S(0.098)S(0.098)DDEIDFK ;; 81.297 0.002365 596793500 274634 532253 380827.9 206565.8 583026 318592.3 449808 505962.5 491383 325750 TRUE FALSE FALSE 335725.3858 594495.3584 521711.9878 217849.9666 524977.8843 335273.3002 353702.8462 381874.4036 589999.0609 244546.52 1.372848756 2.43101132 2.133385451 0.890832413 2.14674036 1.371000087 1.446362215 1.56156139 2.412625054 1 17.89974941 NTVDLVTTCHIHS(ph)SSDDEIDFK ddPTM_HeLa_A486_30min_R1 3 NTVDLVTTCHIHSSSDDEIDFK 22 0 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YDW1 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 NTVDLVT(0.01)T(0.146)CHIHS(0.631)S(0.107)S(0.107)DDEIDFK;NTVDLVTT(0.001)CHIHS(0.713)S(0.143)S(0.143)DDEIDFK;NT(0.016)VDLVT(0.019)T(0.019)CHIHS(0.316)S(0.316)S(0.316)DDEIDFK ;; 67.31 0.005466 649148000 438032 858325 598737 64465.5 720982 549978 514685 673455 797671 249917 TRUE FALSE FALSE 407328.2188 790308.201 830584.0011 150078.9419 630549.7147 482127.3061 385905.3692 520123.9979 866813.7645 187336.1565 2.174317155 4.218663475 4.433655609 0.801121069 3.365873019 2.573594522 2.05996203 2.776420781 4.627050008 1 17.51526985 -5.211574076 24.99998823 2.557824049 3.669856747 0.16307662 1.17747973 699.872903 350880.3046 0.311488352 0.539512894 6.14E-06 5.211574076 1.112032698 VLDEEGS(ph)ER ddPTM_HeLa_A485_30min_R1 5 VLDEEGSER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER ;;;; 201.09 1.89E-10 4825400000 3991700 5208570 3097630 3091190 2272780 3024510 2773360 2360690 2529500 3023100 TRUE FALSE FALSE 4879639.894 5817666.953 4243572.24 3260053.882 2046494.043 3182868.667 2180808.98 1781727.076 3037147.448 2269496.806 2.150097714 2.563417114 1.869829571 1.436465508 0.901739116 1.402455671 0.96092181 0.785075824 1.338247069 1 21.11394103 -5.214548781 1.887183978 1.065495519 2.362108932 0.852339206 0.214109025 0.116135322 0.802682527 0.063403897 0.1355419 6.10E-06 5.214548781 1.296613414 up NTVDLVTTCHIHSS(ph)SDDEIDFK ddPTM_HeLa_A486_30min_R1 2 NTVDLVTTCHIHSSSDDEIDFK 22 0 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YDW1 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 NTVDLVTTCHIHS(0.008)S(0.579)S(0.413)DDEIDFK;NTVDLVTT(0.001)CHIHS(0.078)S(0.588)S(0.334)DDEIDFK ; 216.76 6.03E-36 911250000 1559650 1122850 574750 63338 829980 1409700 1055440 874640 994390 562840 TRUE FALSE FALSE 1450326.589 1033871.277 797308.5923 147454.0649 725876.1691 1235785.547 791357.7487 675503.5653 1080584.526 421901.2005 3.437597682 2.450505652 1.889799297 0.349499041 1.720488513 2.929087533 1.87569447 1.6010942 2.561226478 1 18.68654567 -9.859681675 6.814984753 0.999999988 2.037092568 0.14053526 0.79929629 2.26E-07 3.58E-08 0.818635809 0.198548345 1.38E-10 9.859681675 1.03709258 NTVDLVTTCHIHSSS(ph)DDEIDFK ddPTM_HeLa_A485_30min_R1 2 NTVDLVTTCHIHSSSDDEIDFK 22 0 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YDW1 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 NTVDLVT(0.003)T(0.002)CHIHS(0.024)S(0.138)S(0.834)DDEIDFK;NTVDLVTT(0.002)CHIHS(0.023)S(0.136)S(0.839)DDEIDFK ; 156.08 3.36E-10 853070000 1622060 1231670 896310 648890 1605900 1152490 1403850 1042290 945440 1471740 TRUE FALSE FALSE 1982881.651 1375703.092 1227892.368 684337.2176 1446010.957 1212832.594 1103905.979 786666.7433 1135181.136 1104862.303 1.794686673 1.245135333 1.111353301 0.619386882 1.30877029 1.097722848 0.99913444 0.712004329 1.027441277 1 20.07543515 -4.271704104 1.707309652 0.973119626 2.068086317 0.645979556 0.183740122 0.587274809 1.715577552 0.051859166 1.047466014 5.35E-05 4.271704104 1.094966691 NTVVPTKK ddPTM_HeLa_A485_30min_R1 1 NTVVPTKK 8 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 60.563 0.023505 0 10132 10512 10635 12213 18670 11205 18206 15689 10429 22544 FALSE FALSE TRUE 12385.82845 11741.28696 14569.32906 12880.16527 16811.14925 11791.67647 14316.13937 11841.24815 12522.00464 16924.19569 0.731841481 0.693757457 0.860857988 0.761050362 0.993320424 0.696734822 0.845897769 0.699663864 0.739887725 1 14.04679965 -11.33337835 2.337758987 2.306017975 0.782950539 0.347136778 0.090309912 5231413.496 801276.6442 36157164.31 0.022197474 4.64E-12 11.33337835 -1.523067435 NVAEALGHS(ph)PK ddPTM_HeLa_A485_30min_R1 1 NVAEALGHSPK 11 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NVAEALGHS(1)PK 118.71 0.00016899 183240000 305890 226060 145640 515700 278850 237040 364650 265470 223020 668410 TRUE FALSE FALSE 373934.1752 252495.7505 199518.2966 543871.3852 251086.7149 249451.0479 286739.5486 200363.0663 267778.0683 501787.6882 0.745203966 0.503192399 0.39761497 1.083867536 0.500384367 0.497124688 0.571435998 0.39929849 0.533648144 1 18.93671755 -10.41239899 5.321394852 1.000315188 0.577889121 0.299647042 0.191966191 0.000721906 7.97E-05 0.186925932 0.045303054 3.87E-11 10.41239899 -0.422426067 NVAEALGHS(ph)PK ddPTM_HeLa_A486_30min_R1 1 NVAEALGHSPK 11 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NVAEALGHS(1)PK 118.21 0.00018286 324670000 630340 520880 198080 301860 343170 610120 697710 611910 395350 1067100 TRUE FALSE FALSE 586156.4211 479603.5718 274781.8808 702745.3352 300126.4187 534849.5976 523135.5784 472591.4509 429619.2563 799891.2143 0.732795173 0.599585998 0.343524064 0.878551136 0.375209045 0.668652922 0.654008406 0.590819655 0.537097106 1 19.60944428 -10.15810208 4.068015503 1.000148432 0.595620051 0.394690943 0.149401178 190508993 343054138 371946.4286 0.03493278 6.95E-11 10.15810208 -0.404528381 NVAEALGHS(ph)PKDPGGGGGPVR ddPTM_HeLa_A485_30min_R1 4 NVAEALGHSPKDPGGGGGPVR 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR ;;; 163.1 1.04E-13 5710800000 1060970 1058080 764420 1741540 1668740 1089970 2230740 2127630 989670 2471440 TRUE FALSE FALSE 1296979.116 1181813.252 1047210.768 1836675.92 1502594.386 1147039.144 1754124.176 1605825.407 1188287.691 1855355.491 0.699046152 0.636974023 0.56442594 0.98993208 0.809868725 0.618231465 0.945438318 0.865508208 0.640463618 1 20.82326421 -4.097366623 0.056252 1.353053347 1.05E-12 0.252477507 0.135902498 293.5251989 2.475805869 18.96988458 44.49821215 7.99E-05 4.097366623 -1.353053347 NVAEALGHS(ph)PKDPGGGGGPVR ddPTM_HeLa_A486_30min_R1 4 NVAEALGHSPKDPGGGGGPVR 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR ;;; 173.36 3.46E-14 5959500000 2437580 2027370 1045360 1342130 2058370 2512560 3399420 3246860 1717270 3838860 TRUE FALSE FALSE 2266718.23 1866713.818 1450151.388 3124546.467 1800190.041 2202585.893 2548849.161 2507620.856 1866124.346 2877584.469 0.787715618 0.648708609 0.503947461 1.085822676 0.625590686 0.765428753 0.88575998 0.871432579 0.648503759 1 21.45642685 -13.99999994 0.087237532 1.729246694 0.563593386 0.178469199 0.156010641 385.478165 2.344860023 53.54607275 4.054306526 1.00E-14 13.99999994 -1.165653309 NVALLSQLYHS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 NVALLSQLYHSPAR 14 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 0 NVALLSQLYHS(1)PAR;NVALLSQLYHS(1)PAR;NVALLSQLYHS(1)PAR ;; 196.3 7.32E-19 2751820000 809640 788200 768230 933270 1302800 701858 1172620 914250 686916 1341180 TRUE FALSE FALSE 989741.6248 880373.1336 1052430.246 984252.1769 1173088.658 738606.1996 922080.1576 690028.754 824773.7404 1006848.509 0.983009476 0.874384901 1.045271694 0.977557367 1.165109396 0.733582255 0.915808237 0.68533523 0.819163691 1 19.9414152 -6.277579849 24.99520542 0.816425732 1.001845147 0.408146827 0.106472323 795.0840682 1231267.149 0.036343682 0.032149409 5.28E-07 6.277579849 0.185419415 NVALLSQLYHS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 NVALLSQLYHSPAR 14 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 0 NVALLSQLYHS(1)PAR;NVALLSQLYHS(1)PAR;NVALLSQLYHS(1)PAR;NVALLSQLYHS(1)PAR ;;; 226.57 4.25E-28 6841440000 2045360 1932740 1253561 490928 1839910 1874500 2513060 2099790 1675750 2219470 TRUE FALSE FALSE 1901990.826 1779582.643 1738973.391 1142905.194 1609131.331 1643243.249 1884265.808 1621713.655 1821005.359 1663700.266 1.143229262 1.069653399 1.045244403 0.686965806 0.967200261 0.987703905 1.132575288 0.974763116 1.094551342 1 20.66596411 -8.74241105 14.5826832 1.000005714 1.004993133 0 0.123689399 0 0 0.126498127 0.030680302 1.81E-09 8.74241105 0.004987419 NVALLSQLYHS(ph)PARR ddPTM_HeLa_A485_30min_R1 2 NVALLSQLYHSPARR 15 1 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 0 NVALLSQLYHS(1)PARR;NVALLSQLYHS(1)PARR ; 242.16 2.50E-41 3308300000 592130 786550 713870 659830 1307430 725420 1053690 1228470 666110 1126750 TRUE FALSE FALSE 723847.2757 878530.1804 977960.2196 695874.8421 1177257.679 763401.8695 828560.5236 927185.8063 799792.1671 845871.9613 0.85574095 1.038608939 1.156156327 0.822671603 1.391768178 0.902502866 0.97953421 1.096130205 0.945523913 1 19.69007978 -4.262564573 7.645004634 1.042230493 0.853915974 0.117225033 0.148613668 0.19898471 123.386293 0.034754058 0.197238089 5.46E-05 4.262564573 -0.18831452 NVALLSQLYHS(ph)PARR ddPTM_HeLa_A486_30min_R1 2 NVALLSQLYHSPARR 15 1 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 0 NVALLSQLYHS(1)PARR;NVALLSQLYHS(1)PARR ; 230.29 3.31E-34 2330700000 698340 565320 416950 174462 808700 600120 858950 863870 524310 764890 TRUE FALSE FALSE 649389.9722 520521.9843 578404.2063 406156.3528 707265.3052 526083.296 644031.625 667185.6591 569757.613 573356.5654 1.132611034 0.907850395 1.008803668 0.708383539 1.233552292 0.917549964 1.123265458 1.163648765 0.993723012 1 19.12907309 -5.783712732 24.99999401 1.074984045 0.942114014 0.199456708 0.12995715 382.2044473 428990.77 0.038812 0.044041978 1.65E-06 5.783712732 -0.132870031 NVASVCLQIGYPTVASVPHSIINGYKR ddPTM_HeLa_A485_30min_R1 1 NVASVCLQIGYPTVASVPHSIINGYKR 27 1 F8VWS0;P05388-2;P05388;F8W1K8;F8VW21;F8VU65;F8VZS0 F8VWS0 RPLP0 60S acidic ribosomal protein P0 0 0 109.23 5.03E-08 38025000 5085.8 6808.5 5069.9 5868.9 8638.5 5721.7 9713.7 11173 3592.3 7608.1 FALSE FALSE TRUE 6217.118664 7604.694849 6945.466986 6189.503146 7778.420608 6021.279365 7638.288641 8432.804231 4313.241659 5711.540687 1.088518669 1.331461206 1.216040884 1.08368363 1.361877825 1.05423032 1.337342945 1.476449997 0.755180064 1 12.47966425 -7.77260074 24.99992426 0.87758994 1.241115119 0.51615772 0.141768129 188.2205446 421574.3473 0.1273624 0.034120501 1.69E-08 7.77260074 0.363525178 NVDAAVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 NVDAAVSPR 9 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 NVDAAVS(1)PR;NVDAAVS(1)PR ; 145.31 1.00E-04 1809220000 1396290 1832010 1744060 1629380 2423600 1704340 2189200 2287600 1606650 2192800 TRUE FALSE FALSE 1706889.893 2046247.633 2389260.37 1718388.904 2182297.874 1793576.607 1721459.536 1726562.513 1929089.918 1646175.315 1.036882206 1.243031416 1.451400922 1.043867495 1.325677681 1.089541673 1.045732808 1.048832708 1.171861769 1 20.65068656 -6.401576157 7.265872914 1.070335902 1.224200003 0.275930254 0.120930778 0.358274128 19.84605058 0.042233184 0.037141069 3.97E-07 6.401576157 0.1538641 NVDAAVS(ph)PR ddPTM_HeLa_A486_30min_R1 1 NVDAAVSPR 9 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 NVDAAVS(1)PR 66.953 0.017603 1077700000 780880 817280 775290 334430 997970 765850 1015200 976150 750280 1048200 TRUE FALSE FALSE 726144.3445 752515.7563 1075503.051 778569.9412 872795.2969 671367.2136 761186.2223 753901.9542 815314.8745 785723.8974 0.924172406 0.95773561 1.36880532 0.990895076 1.110816789 0.85445691 0.968770614 0.959499841 1.037660783 1 19.58366291 -6.235183348 24.90442854 0.961839658 1.076372873 0.157779605 0.122490404 1362.663358 1292516.926 0.041320517 0.041308566 5.82E-07 6.235183348 0.114533215 NVDLLSDMVQEHDEPILK ddPTM_HeLa_A486_30min_R1 1 NVDLLSDMVQEHDEPILK 18 0 P55209;P55209-2;F8W0J6;H0YIV4;B7Z9C2;F8VV59;F5H4R6;F8VY35;F8W118;F8W020;H0YHC3;H0YH88;P55209-3;F8W543;F8VUX1;F8VXI6 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 116.29 0.00021974 24832000 30426 27541 18166 16555 44651 34645 38195 40379 22301 45901 FALSE FALSE TRUE 28293.29452 25358.55086 25200.3617 38540.87664 39050.45523 30370.85214 28638.20701 31185.58317 24234.06864 34407.09083 0.82230999 0.737015256 0.732417682 1.120143427 1.134953705 0.882691661 0.83233445 0.906370821 0.704333556 1 15.07041829 -5.21465356 24.99573335 0.937451549 0.761224305 0.301619999 0.122801221 575.5231446 307477.3547 0.03631485 0.06289896 6.10E-06 5.21465356 -0.176227244 NVFEVGPGDS(ph)PTFPR ddPTM_HeLa_A485_30min_R1 2 NVFEVGPGDSPTFPR 15 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 NVFEVGPGDS(0.995)PT(0.005)FPR;NVFEVGPGDS(1)PTFPR ; 179.14 1.08E-17 324500000 255470 325670 306980 315830 425610 344120 476580 402340 295860 473370 TRUE FALSE FALSE 312298.4201 363754.2735 420544.6765 333082.9932 383234.774 362137.5911 374754.7897 303665.4842 355236.3882 355367.5707 0.878803937 1.023600079 1.183407579 0.937291471 1.078417969 1.019050755 1.054555397 0.85451096 0.999630854 1 18.43895251 -7.225041103 24.99196716 0.945303066 1.029505752 0.133540461 0.085000492 985.9587528 676985.1652 0.039197063 0.02262956 5.96E-08 7.225041103 0.084202686 NVFEVGPGDS(ph)PTFPR ddPTM_HeLa_A486_30min_R1 1 NVFEVGPGDSPTFPR 15 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 NVFEVGPGDS(1)PTFPR 159.4 2.96E-09 94801000 171560 177660 134130 54210 195260 156010 195520 187770 148910 197540 TRUE FALSE FALSE 159534.5299 163581.5746 186068.7281 126203.6196 170768.6701 136763.0724 146598.828 145018.87 161817.6387 148074.6982 1.077392234 1.104723336 1.256586914 0.85229699 1.153260294 0.923608652 0.990032934 0.979362928 1.092810863 1 17.17596562 -5.252893408 24.99435121 1.000849281 1.142083067 0.365922881 0.088876956 692.7985141 2026218.499 0.023018918 0.039089571 5.59E-06 5.252893408 0.141233785 NVFIIGATNRPDIIDPAILRPGR ddPTM_HeLa_A485_30min_R1 2 NVFIIGATNRPDIIDPAILRPGR 23 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 139.83 1.31E-12 62962000 48906 53327 55382 82488 86820 44934 82405 61746 48535 116706 FALSE FALSE TRUE 59784.97098 59563.12877 75870.10644 86994.11057 78175.89596 47286.67476 64798.49856 46602.69669 58275.52931 87613.34201 0.682372908 0.679840848 0.865965214 0.992932224 0.892283003 0.539720021 0.739596243 0.531913241 0.665144463 1 16.41886296 -6.246553378 24.83642647 0.668789454 0.826606716 0.140672399 0.150330171 1238.231891 2065918.949 0.050198595 0.049996831 5.67E-07 6.246553378 0.157817262 NVFIIGATNRPDIIDPAILRPGR ddPTM_HeLa_A486_30min_R1 2 NVFIIGATNRPDIIDPAILRPGR 23 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 122.01 3.73E-09 85277000 34399 38079 29319 18836.1 38961 39093 51850 49409 39175 53004 FALSE FALSE TRUE 31987.80774 35061.48136 40672.10199 43851.39272 34074.14808 34270.10313 38876.58159 38159.64929 42570.72054 39731.4534 0.805100368 0.882461585 1.023675162 1.103694654 0.857611418 0.862543406 0.978483752 0.9604393 1.071461447 1 15.27799395 -4.552078423 4.351112806 0.975983237 0.818679598 0.371417667 0.074693911 0.216507997 9.3532788 0.020716638 0.067667103 2.80E-05 4.552078423 -0.15730364 NVFLHLHNLDLGFHLSR ddPTM_HeLa_A485_30min_R1 1 NVFLHLHNLDLGFHLSR 17 0 A0A2R8Y473;A0A590UJS8;B4DGL8;A0A087WW65;A0A5F9ZA98;O75027-3;O75027;O75027-2 A0A2R8Y473 ABCB7 "ATP-binding cassette sub-family B member 7, mitochondrial" 0 0 130.27 3.94E-06 3891400 5680.7 5894.2 3812.8 3456.6 4656.4 4628.5 7288.5 6792.8 4529.7 6171.6 FALSE FALSE TRUE 6944.352117 6583.475417 5223.313384 3645.425305 4192.792466 4870.841103 5731.252433 5126.855149 5438.769241 4633.1337 1.498845612 1.420955199 1.127382399 0.786816341 0.904958229 1.051305967 1.237014255 1.106563178 1.173885666 1 12.1777726 -4.779035857 3.684045981 1.039653188 1.477752278 0.65478079 0.121289868 0.143023169 4.102273615 0.036509922 0.095674905 1.66E-05 4.779035857 0.43809909 NVFSSSGTSFS(ph)GRK ddPTM_HeLa_A486_30min_R1 1 NVFSSSGTSFSGRK 14 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 NVFSSSGT(0.005)S(0.011)FS(0.984)GRK 73.057 0.0051647 397970000 206380 139730 108920 99230 176950 161710 249550 253730 134860 287090 TRUE FALSE FALSE 191913.8277 128657.2859 151096.741 231012.4548 154755.281 141759.8643 187109.9505 195961.2179 146549.7734 215200.7954 0.891789584 0.597847632 0.702119807 1.073473982 0.719120395 0.658732995 0.869466817 0.910597089 0.680990854 1 17.71532388 -14 0.281281126 2.537783537 0.77643752 0.164642308 0.138700158 437.3168225 4.188664191 393.1104107 0.161416827 1.00E-14 14 -1.761346017 NVGCLQEALQLATSFAQLR ddPTM_HeLa_A485_30min_R1 1 NVGCLQEALQLATSFAQLR 19 0 P49588-2;P49588 P49588-2 AARS "Alanine--tRNA ligase, cytoplasmic" 0 0 118.21 2.13E-05 1519000 1610.6 1591.5 1066.6 1847.9 2456.9 1386.2 3051.4 2459 1075.4 2584 FALSE FALSE TRUE 1968.872413 1777.612081 1461.179725 1948.846098 2212.282409 1458.779289 2399.443462 1855.926394 1291.222916 1939.856355 1.014957839 0.916362738 0.753241198 1.004634231 1.1404362 0.752003768 1.236918113 0.95673393 0.665628108 1 10.92173411 -4.247012447 21.21165366 0.941307579 1.014958252 0.018571632 0.168094363 1807.509089 2657148.795 0.041345214 0.696379054 5.66E-05 4.247012447 0.073650673 NVGESVAAALS(ph)PLGIEVDIDVEHGGK ddPTM_HeLa_A486_30min_R1 2 NVGESVAAALSPLGIEVDIDVEHGGK 26 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 NVGESVAAALS(1)PLGIEVDIDVEHGGK;NVGESVAAALS(1)PLGIEVDIDVEHGGK ; 150.23 1.02E-11 22771000 78872.2 64057.3 38588.4 68936 64096.7 87826.2 96706.5 82389.7 60032.7 93531.4 TRUE FALSE FALSE 73343.66608 58981.16626 53530.86191 160486.4918 56057.09421 76991.0964 72509.51084 63631.36386 65236.38277 70110.52865 1.046114863 0.841259756 0.763521014 2.289049803 0.799553153 1.098138866 1.034217146 0.907586422 0.930479117 1 16.09734349 NVGESVAAALS(ph)PLGIEVDIDVEHGGKR ddPTM_HeLa_A485_30min_R1 9 NVGESVAAALSPLGIEVDIDVEHGGKR 27 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR ;;;;;;;; 138.84 1.20E-06 399937000 277113.7 251653.3 171672.9 324101.2 293546.3 237198.6 383448.8 499809 200111.8 482554 TRUE FALSE FALSE 338756.6865 281081.9643 235181.8496 341806.0279 264319.7997 249617.9519 301521.8314 377230.0591 240272.4027 362262.1685 0.935114721 0.775907585 0.64920345 0.943532219 0.729636773 0.689053325 0.832330443 1.041317841 0.663255575 1 18.46667463 -10.31933736 0.35048942 1.117615302 0.792647887 0.162646408 0.126362534 36.03253412 2.828846121 4.044334355 0.102248411 4.79E-11 10.31933736 -0.324967415 NVGESVAAALS(ph)PLGIEVDIDVEHGGKR ddPTM_HeLa_A486_30min_R1 10 NVGESVAAALSPLGIEVDIDVEHGGKR 27 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGESVAAALS(1)PLGIEVDIDVEHGGKR ;;;;;;;;; 170.44 4.83E-14 624534000 399821.7 260084.5 152585.2 361887.1 282835.6 335622.7 388388 318818.9 205650.3 441166 TRUE FALSE FALSE 371796.2635 239474.457 211670.2758 842491.4576 247359.7217 294216.9836 291209.2145 246230.7962 223476.2336 330695.1621 1.124286975 0.724154703 0.640076723 2.547637686 0.747999215 0.889692434 0.880597142 0.74458542 0.675777148 1 18.33514241 NVHS(ph)EDFENR ddPTM_HeLa_A485_30min_R1 2 NVHSEDFENR 10 0 Q9H2P0;A0A669KBJ7 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 NVHS(1)EDFENR;NVHS(1)EDFENR ; 220.34 6.01E-17 2629100000 1035800 1383480 1226410 1244610 1840320 1291510 1812220 1895360 1224580 1740030 TRUE FALSE FALSE 1266210.137 1545265.951 1680110.094 1312599.893 1657091.279 1359131.467 1425024.393 1430519.988 1470341.973 1306272.544 0.969330744 1.182958303 1.286186487 1.00484382 1.268564732 1.040465463 1.090908937 1.095116019 1.125601223 1 20.31702451 NVHS(ph)EDFENR ddPTM_HeLa_A486_30min_R1 2 NVHSEDFENR 10 0 Q9H2P0;A0A669KBJ7 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 NVHS(1)EDFENR;NVHS(1)EDFENR ; 217.46 7.28E-17 2484200000 1828840 2052760 1571550 764500 2296000 1858310 2334200 2252500 1687910 2221380 TRUE FALSE FALSE 1700647.76 1890091.822 2180096.248 1779794.636 2008014.271 1629050.606 1750158.471 1739654.922 1834219.398 1665131.989 1.021329103 1.135100301 1.309263327 1.068860996 1.20591898 0.978331217 1.051062908 1.04475497 1.101545949 1 20.66720511 -6.259404671 24.98518305 1.038931439 1.151924597 0.3416024 0.078229397 222.8266089 2736213.981 0.026579822 0.025316741 5.50E-07 6.259404671 0.112993158 NVIGLQMGTNR ddPTM_HeLa_A485_30min_R1 2 NVIGLQMGTNR 11 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ; ; 301.62 1.33E-58 221820000 181399 194804 179537 200082 286700 171988 301190 276670 151951 295490 FALSE FALSE TRUE 221750.5817 217584.6332 245955.2075 211011.973 258155.1413 180993.0257 236838.296 208816.2487 182446.1719 221829.7811 0.999642972 0.980863039 1.108756481 0.951233743 1.163753307 0.8159095 1.0676578 0.941335504 0.822460226 1 17.75909354 -6.264486115 24.99566974 0.934442657 1.036311213 0.27337273 0.090459261 405.9372529 3330330.351 0.030049368 0.027599202 5.44E-07 6.264486115 0.101868556 NVIGLQMGTNR ddPTM_HeLa_A486_30min_R1 2 NVIGLQMGTNR 11 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ; ; 271.74 6.42E-46 204768000 184339 203678 154341 79514 234400 190284 272990 256280 189907 264820 FALSE FALSE TRUE 171417.788 187537.8135 214105.9686 185112.6104 204999.3663 166808.6947 204685.0146 197930.6386 206368.2917 198507.3483 0.863533715 0.944739906 1.078579561 0.93252271 1.03270417 0.840314961 1.031120593 0.997094769 1.039600264 1 17.59883289 -4.393101444 3.924625629 0.990009802 0.865245268 0.281908031 0.063282772 0.29992519 7.272441945 0.015542525 0.078553547 4.04E-05 4.393101444 -0.124764534 NVNIFK ddPTM_HeLa_A485_30min_R1 2 NVNIFK 6 0 P00338;P00338-3;P00338-2;P00338-5;F5GYU2;F5GXY2 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 106.29 0.036186 91391000 208420 177416 254500 365960 460370 202840 313240 263420 292090 560990 FALSE FALSE TRUE 254782.31 198163.2579 348650.1406 385951.4681 414533.9463 213460.3887 246313.7151 198815.832 350709.7838 421145.5173 0.604974527 0.470533936 0.827861455 0.916432569 0.984300982 0.506856609 0.58486605 0.472083458 0.832752029 1 18.68395928 -4.758680836 24.9873722 0.744285686 0.537754205 0.192917488 0.182307803 131.0678405 1187171.168 0.050580229 0.12200602 1.74E-05 4.758680836 -0.206531481 NVNVQNFHISWK ddPTM_HeLa_A485_30min_R1 1 NVNVQNFHISWK 12 0 O43707 O43707 ACTN4 Alpha-actinin-4 0 0 133.05 0.00025855 48354000 94294 144200 138650 56681 244290 104520 171240 159160 126710 140870 FALSE FALSE TRUE 115269.375 161062.9356 189942.4047 59777.33951 219967.6298 109992.5056 134653.1751 120125.7604 152139.5347 105753.7015 1.089979578 1.523000456 1.796082804 0.565250565 2.079999345 1.040081851 1.273271509 1.135901238 1.438621368 1 16.69034863 -10.59911661 0.215213089 0.67490398 1.407960816 0.055935024 0.399701915 78.80869995 2.957683441 14.56895638 0.901125602 2.52E-11 10.59911661 0.733056836 NVNVQNFHISWK ddPTM_HeLa_A486_30min_R1 1 NVNVQNFHISWK 12 0 O43707 O43707 ACTN4 Alpha-actinin-4 0 0 119.39 0.0004934 54799000 98758 109690 80546 10750 118550 78588 98981 87271 102780 49920 FALSE FALSE TRUE 91835.57419 100997.7649 111735.5683 25026.54327 103680.3536 68892.61158 74214.90689 67401.29841 111689.0532 37419.70708 2.45420345 2.699052794 2.986008631 0.668806499 2.770741988 1.841078324 1.983310739 1.80122464 2.984765566 1 15.19151064 NVPESSPHS(ph)PCEGLPSEAALTPRPEGK ddPTM_HeLa_A485_30min_R1 1 NVPESSPHSPCEGLPSEAALTPRPEGK 27 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 NVPESSPHS(1)PCEGLPSEAALTPRPEGK 182.73 2.19E-20 481630000 242710 204800 195300 334980 349580 215240 395980 341660 203730 479680 TRUE FALSE FALSE 296700.0022 228749.5785 267549.5971 353279.1092 314774.5878 226509.6336 311375.6381 257867.3493 244616.7423 360104.6039 0.823927267 0.635230919 0.742977441 0.9810458 0.874119865 0.629010657 0.864681081 0.716090121 0.679293571 1 18.45805652 -5.01806204 24.91214266 0.809255699 0.719460337 0.089932361 0.122164131 1745.726003 2407806.422 0.03320192 0.059041377 9.59E-06 5.01806204 -0.089795363 NVPESSPHS(ph)PCEGLPSEAALTPRPEGK ddPTM_HeLa_A486_30min_R1 2 NVPESSPHSPCEGLPSEAALTPRPEGK 27 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 NVPES(0.033)S(0.136)PHS(0.832)PCEGLPSEAALTPRPEGK;NVPESSPHS(0.999)PCEGLPSEAALTPRPEGK ; 150.55 2.21E-09 840020000 520140 467040 264500 145019 521460 590470 879120 763970 455030 789100 TRUE FALSE FALSE 483680.872 430030.0495 366921.4836 337611.5609 456053.6244 517623.8149 659154.8776 590030.7083 494472.3668 591504.2238 0.817713302 0.727010953 0.620319296 0.570767794 0.771006539 0.875097411 1.114370534 0.997508867 0.835957457 1 19.17402895 -6.298590292 2.65434257 0.985829645 0.683914445 0.690398419 0.090614571 0.166616101 2.325129749 0.0363465 0.032853601 5.03E-07 6.298590292 -0.3019152 NVPHEDICEDS(ph)DIDGDYR ddPTM_HeLa_A485_30min_R1 2 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 1 0 NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR ; 294.36 9.77E-79 2119760000 864930 709510 779970 1119480 1263640 566440 911980 644160 750740 1318510 TRUE FALSE FALSE 1057330.695 792481.0226 1068513.36 1180634.358 1137827.565 596097.9225 717128.0228 486178.75 901406.6318 989829.7224 1.068194529 0.800623587 1.079492095 1.19276511 1.149518487 0.602222695 0.724496352 0.491174127 0.910668382 1 19.91682084 -6.260076455 24.99632017 0.712584693 1.052481239 0.462774607 0.166341098 106.247184 1948606.477 0.056527267 0.053646589 5.49E-07 6.260076455 0.339896546 NVPHEDICEDS(ph)DIDGDYR ddPTM_HeLa_A486_30min_R1 2 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 1 0 NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR ; 307.85 8.33E-81 2879500000 586290 925080 629670 377720 939600 873010 1001920 957930 766820 719130 TRUE FALSE FALSE 545194.0986 851773.2917 873495.0871 879351.2489 821746.6066 765306.9023 751229.0188 739830.2505 833288.575 539055.1672 1.011388317 1.580122673 1.620418726 1.631282478 1.524420238 1.419719073 1.393603224 1.372457395 1.545831717 1 19.0400734 -11.67909742 0.481330208 2.87E-11 1.47186295 0.380366119 0.172906652 166.4212129 7.574157797 172.8973932 0.087681215 2.09E-12 11.67909742 1.47186295 NVPPGLDEYNPFSDS(ph)RTPPPGGVK ddPTM_HeLa_A486_30min_R1 1 NVPPGLDEYNPFSDSRTPPPGGVK 24 1 A0A087WZA6;O15126-2;O15126 A0A087WZA6 SCAMP1 Secretory carrier-associated membrane protein 1 1 0 NVPPGLDEYNPFS(0.016)DS(0.492)RT(0.492)PPPGGVK 101.59 0.00041799 77335000 51935 42995 25214 22662 49022 47388 55332 57395 45837 77104 TRUE FALSE FALSE 48294.62469 39587.91961 34977.53605 52758.28127 42873.20365 41541.75037 41487.34836 44327.41142 49810.18807 57796.65654 0.835595475 0.684951725 0.60518269 0.912825835 0.741793838 0.718756981 0.717815715 0.766954597 0.861817812 1 15.81869842 -8.00985581 2.040779517 0.9991703 0.742525957 0.508435622 0.078218234 0.27523391 2.633102498 0.075271652 0.021035525 9.78E-09 8.00985581 -0.256644343 NVPPGLDEYNPFSDSRT(ph)PPPGGVK ddPTM_HeLa_A485_30min_R1 1 NVPPGLDEYNPFSDSRTPPPGGVK 24 1 A0A087WZA6;O15126-2;O15126 A0A087WZA6 SCAMP1 Secretory carrier-associated membrane protein 1 1 0 NVPPGLDEYNPFS(0.011)DS(0.19)RT(0.798)PPPGGVK 116.24 0.00017469 181890000 118150 108820 74979 165550 132790 112940 197330 198680 100600 284670 TRUE FALSE FALSE 144432.0599 121545.5524 102716.8522 174593.5773 119568.9613 118853.3638 155168.8335 149953.4185 120789.4972 213707.008 0.675841477 0.568748557 0.48064335 0.816976378 0.559499487 0.556150989 0.726082102 0.701677591 0.565210745 1 17.70527469 -14 0.312908717 4.355950203 0.611522292 0.570143794 0.096514974 220.9199209 1.994808288 489.193907 0.089927368 1.00E-14 14 -3.744427911 NVPQEESLEDS(ph)DVDADFK ddPTM_HeLa_A485_30min_R1 4 NVPQEESLEDSDVDADFK 18 0 O00505 O00505 KPNA3 Importin subunit alpha-4 1 0 NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK ;;; 341.1 4.56E-102 3804010000 1346100 897410 729140 2204190 1571090 976830 1762880 1210180 894590 2690880 TRUE FALSE FALSE 1645535.301 1002354.293 998879.228 2324599.318 1414666.763 1027975.308 1386226.287 913381.4575 1074126.007 2020093.138 0.814583877 0.496192118 0.494471868 1.150738684 0.700297792 0.508875204 0.686218997 0.452148191 0.531721032 1 20.94599038 -6.0197863 24.32717552 0.604690558 0.73185369 0.036862229 0.222460373 1687.680898 2074995.363 0.073725215 0.074780335 9.55E-07 6.0197863 0.127163132 NVPQEESLEDS(ph)DVDADFK ddPTM_HeLa_A486_30min_R1 6 NVPQEESLEDSDVDADFK 18 0 O00505 O00505 KPNA3 Importin subunit alpha-4 1 0 NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEES(0.059)LEDS(0.941)DVDADFK ;;;;; 347.53 3.63E-115 5005990000 1420331 1317200 715919 780638 1188888 1762045 2142880 1988367 1169085 2320901 TRUE FALSE FALSE 1320773.131 1212820.275 993142.0098 1817364.715 1039766.581 1544661.803 1606708.759 1535659.24 1270422.229 1739732.283 0.759181826 0.697130407 0.570859103 1.044623206 0.597658957 0.887873277 0.923537934 0.882698594 0.730240073 1 20.73043388 -1.75635471 0.07615198 1.17080754 5.45E-12 0.232943215 0.13549588 267.6664101 1.733559981 4.839534012 33.73942083 0.017524486 1.75635471 -1.17080754 NVQQTVSAK(ac)GPPEKR ddPTM_HeLa_A485_30min_R1 2 NVQQTVSAKGPPEKR 15 2 G3V4A5;A0A087WYL7;O75586;O75586-2 G3V4A5 MED6 Mediator of RNA polymerase II transcription subunit 6 0 1 ; NVQQTVSAK(1)GPPEKR;NVQQTVSAK(1)GPPEKR 182.18 2.29E-10 72244000 24005.9 22124.1 19387.2 28029.9 39308 24027.3 39978 32978.7 23854.8 50519 FALSE TRUE FALSE 29345.92964 24711.32104 26559.33205 29561.10246 35394.3575 25285.33227 31436.37371 24890.62212 28642.23955 37925.54303 0.773777441 0.651574613 0.700301958 0.779451 0.933259083 0.666709828 0.828897128 0.656302326 0.755222925 1 15.21088222 -11.3618113 2.179641812 2.545172495 0.748617195 0.449532745 0.083154897 4316024.946 460305.221 32905127.01 0.022022249 4.35E-12 11.3618113 -1.796555299 NVQQTVSAK(ac)GPPEKR ddPTM_HeLa_A486_30min_R1 2 NVQQTVSAKGPPEKR 15 2 G3V4A5;A0A087WYL7;O75586;O75586-2 G3V4A5 MED6 Mediator of RNA polymerase II transcription subunit 6 0 1 ; NVQQTVSAK(1)GPPEKR;NVQQTVSAK(1)GPPEKR 207.55 1.22E-15 72379000 65182 60074 37484 28100 65870 67708 90677 83010 60436 104048 FALSE TRUE FALSE 60613.0784 55313.51745 51998.80866 65418.2201 57607.97039 59354.87536 67988.65552 64110.4351 65674.64114 77993.70356 0.777153483 0.709204909 0.666705212 0.838762837 0.738623347 0.761021373 0.871719798 0.821995009 0.842050552 1 16.25107004 -8.370114475 0.251438898 1.063481937 0.696352668 0.725623782 0.047039062 2.014565514 0.324016042 0.237847113 0.103377916 4.26E-09 8.370114475 -0.367129269 NVRS(ph)DIS(ph)DQEEDEES(ph)EGCPVSINLSK ddPTM_HeLa_A486_30min_R1 1 NVRSDISDQEEDEESEGCPVSINLSK 26 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 3 0 NVRS(1)DIS(1)DQEEDEES(1)EGCPVSINLSK 79.018 0.014796 215590000 95113 99658 61068 56123 108990 121530 142100 137620 81581 116270 TRUE FALSE FALSE 88446.06986 91760.73713 84715.16506 130657.1803 95319.45791 106536.8642 106545.077 106286.9302 88652.50677 87155.23521 1.014810753 1.052842516 0.972003172 1.49913175 1.093674496 1.222380549 1.22247478 1.219512861 1.017179365 1 16.41129971 NVRS(ph)DIS(ph)DQEEDEESEGCPVSINLSK ddPTM_HeLa_A485_30min_R1 1 NVRSDISDQEEDEESEGCPVSINLSK 26 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 NVRS(1)DIS(1)DQEEDEESEGCPVSINLSK 141.23 1.34E-07 145790000 98353 96274 81757 134250 169430 109050 173810 159650 114750 172160 TRUE FALSE FALSE 120231.2855 107532.4068 112002.3165 141583.7376 152560.9543 114759.6894 136674.0736 120495.5872 137779.2725 129243.6804 0.930268197 0.832012881 0.866598012 1.095478999 1.180413262 0.887932695 1.057491347 0.932313184 1.066042626 1 16.97973421 -5.247188967 24.51225016 1.02988195 0.871864989 0.438352906 0.080387548 587.4714548 1010511.958 0.022184399 0.03817592 5.66E-06 5.247188967 -0.158016961 NVRS(ph)DIS(ph)DQEEDEESEGCPVSINLSK ddPTM_HeLa_A486_30min_R1 1 NVRSDISDQEEDEESEGCPVSINLSK 26 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 NVRS(1)DIS(1)DQEEDEESEGCPVSINLSK 164.74 1.16E-13 213560000 148090 151090 113910 84113 203090 195580 204230 219680 147370 216280 TRUE FALSE FALSE 137709.6557 139117.0781 158019.0026 195819.3148 177616.5585 171451.3281 153129.4939 169663.6596 160144.1503 162122.0803 0.849419496 0.858100747 0.974691432 1.207850988 1.095572905 1.057544585 0.944532007 1.046517904 0.987799749 1 17.30672107 -4.88897952 3.989213009 1.051072334 0.853918476 0.565516766 0.067362426 0.161922582 4.708086134 0.019382537 0.044260141 1.29E-05 4.88897952 -0.197153858 NVS(ph)ES(ph)PNR ddPTM_HeLa_A485_30min_R1 4 NVSESPNR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 NVS(1)ES(1)PNR;NVS(1)ES(1)PNR;NVS(1)ES(1)PNR;NVS(1)ES(1)PNR ;;; 102.97 0.0035996 5112680000 7167200 7321200 6581500 10383200 8453200 6459400 8804400 7411600 7694700 11902500 TRUE FALSE FALSE 8761518.913 8177350.654 9016270.729 10950407.92 7611569.727 6797604.196 6923268.015 5593893.479 9238955.71 8935425.799 0.98053737 0.915160714 1.009047686 1.22550488 0.851841859 0.760747652 0.774811203 0.626035469 1.033969272 1 23.09110505 -5.974835707 24.93141864 0.811118131 1.024519302 0.320153366 0.133408488 236.0514105 233865.7635 0.040929168 0.046407803 1.06E-06 5.974835707 0.21340117 NVS(ph)ES(ph)PNR ddPTM_HeLa_A486_30min_R1 3 NVSESPNR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 NVS(1)ES(1)PNR;NVS(1)ES(1)PNR;NVS(1)ES(1)PNR ;; 128.36 0.0011961 3337260000 4444300 4137500 3507500 1584420 3856800 4809700 4729500 4266200 4499700 5189900 TRUE FALSE FALSE 4132777.52 3809629.431 4865697.934 3688609.832 3373044.181 4216328.115 3546129.076 3294879.39 4889737.619 3890315.259 1.062324579 0.979259823 1.250720728 0.948151907 0.867036206 1.083801141 0.911527432 0.846944057 1.256900095 1 21.89145564 NVS(ph)ES(ph)PNRK ddPTM_HeLa_A485_30min_R1 1 NVSESPNRK 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 NVS(1)ES(1)PNRK 96.866 0.0011495 1723300000 2727500 2626900 1135800 4403700 1783300 2294900 3302200 3241600 2010300 5147900 TRUE FALSE FALSE 3334222.965 2934093.104 1555979.685 4644262.98 1605748.39 2415057.415 2596657.994 2446592.517 2413748.77 3864623.27 0.862754978 0.759218402 0.40262131 1.201737571 0.415499333 0.624914059 0.671904559 0.633074001 0.624575438 1 21.88189635 -10.13208361 4.199725042 1.000069833 0.685231417 0.157526699 0.216010763 279655520.5 583913492.5 274796.2884 0.051410879 7.38E-11 10.13208361 -0.314838416 NVS(ph)ES(ph)PNRK ddPTM_HeLa_A486_30min_R1 3 NVSESPNRK 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 NVS(1)ES(1)PNRK;NVS(1)ES(1)PNRK;NVS(1)ES(1)PNRK ;; 101.39 0.00080156 3296400000 10084300 4538600 3338840 3412190 3323030 10881600 8222400 6208800 7854900 14865800 TRUE FALSE FALSE 9377442.645 4178944.807 4631728.265 7943750.763 2906224.591 9539138.828 6165068.552 4795191.777 8535769.056 11143306.92 0.841531398 0.375018371 0.415651144 0.712871935 0.2608045 0.856042008 0.553253051 0.430320354 0.765999637 1 23.4096741 -8.005721085 4.878668933 0.999538609 0.551391219 0.360060868 0.187667265 0.155992296 12.83015228 0.171463686 0.044729964 9.87E-09 8.005721085 -0.44814739 NVS(ph)ES(ph)PNRKNEK ddPTM_HeLa_A485_30min_R1 4 NVSESPNRKNEK 12 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 NVS(1)ES(1)PNRKNEK;NVS(1)ES(1)PNRKNEK;NVS(1)ES(1)PNRKNEK;NVS(1)ES(1)PNRKNEK ;;; 107.98 0.0017976 4959330000 4500030 4813160 3851990 6673800 7765900 6601320 11410600 12917600 5331250 10344100 TRUE FALSE FALSE 5501046.149 5376017.193 5277001.396 7038372.795 6992699.728 6946954.908 8972632.094 9749538.346 6401182.974 7765506.239 0.708395046 0.692294492 0.679543771 0.906363678 0.900482147 0.894591375 1.155447155 1.255492951 0.82430981 1 22.88864855 -5.748710442 0.966278692 1.06478463 0.676668895 0.592561082 0.116978597 0.381032492 0.763096539 0.056130632 0.089891784 1.78E-06 5.748710442 -0.388115734 NVS(ph)ES(ph)PNRKNEK ddPTM_HeLa_A486_30min_R1 4 NVSESPNRKNEK 12 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 NVS(1)ES(1)PNRKNEK;NVS(1)ES(1)PNRKNEK;NVS(1)ES(1)PNRKNEK;NVS(1)ES(1)PNRKNEK ;;; 118.21 0.00068873 5114330000 5698380 3597340 2186370 5089210 5454370 7007500 11207200 10027000 3957830 10439500 TRUE FALSE FALSE 5298952.988 3312273.677 3032991.017 11847938.07 4770232.055 6142985.897 8403040.022 7744070.988 4300897.891 7825381.25 0.677149498 0.423273138 0.387583802 1.514039725 0.60958462 0.785007874 1.073818611 0.989609418 0.549608735 1 22.89972961 NVS(ph)PEFVPCEGEGGFGLHK ddPTM_HeLa_A485_30min_R1 2 NVSPEFVPCEGEGGFGLHK 19 0 O94986-3;O94986 O94986-3 CEP152 Centrosomal protein of 152 kDa 1 0 NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK ; 168.65 1.10E-12 856200000 539610 515620 424800 658850 718270 538910 813510 836630 499520 894510 TRUE FALSE FALSE 659644.3829 575917.2737 581951.1974 694841.3072 646756.5168 567126.4943 639696.9427 631445.1807 599769.0821 671525.1192 0.98230783 0.857625809 0.866611212 1.034721245 0.963115896 0.844535041 0.952603148 0.940315057 0.893144672 1 19.35708184 -10.16247094 4.714373588 1.000008398 0.925425504 0.128819726 0.057622292 5.17E-06 9.18E-07 0.056691628 0.013748191 6.88E-11 10.16247094 -0.074582894 NVS(ph)PEFVPCEGEGGFGLHK ddPTM_HeLa_A486_30min_R1 4 NVSPEFVPCEGEGGFGLHK 19 0 O94986-3;O94986 O94986-3 CEP152 Centrosomal protein of 152 kDa 1 0 NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK ;;; 184.4 2.76E-18 1405420000 1862240 1781530 1029730 774142 1837610 1861060 2364320 2296940 1498220 2438120 TRUE FALSE FALSE 1731706.593 1640355.075 1428469.033 1802241.699 1607119.819 1631461.339 1772742.129 1773976.904 1628086.916 1827598.883 0.947530998 0.897546552 0.78160971 0.986125411 0.879361349 0.892680202 0.969984249 0.970659876 0.890833832 1 20.80151803 -6.754470543 24.87991819 0.955424481 0.895418431 0.220515675 0.055469624 243.3855091 868929.7797 0.021331611 0.01615623 1.76E-07 6.754470543 -0.06000605 NVS(ph)TGS(ph)AENEEK ddPTM_HeLa_A486_30min_R1 1 NVSTGSAENEEK 12 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 NVS(0.992)T(0.008)GS(1)AENEEK 179.46 1.39E-10 0 844190 733380 238040 370600 485760 793680 1024400 854110 619420 1466000 TRUE FALSE FALSE 785016.6404 675264.2979 330215.4629 862775.5291 424831.4513 695763.8311 768084.285 659647.7981 673111.8243 1098904.058 0.714363219 0.614488856 0.300495262 0.785123617 0.38659558 0.633143381 0.698954817 0.60027788 0.612530111 1 20.067634 -10.74081402 0.354670779 1.350911163 0.565343974 0.43998238 0.138369065 27.62857677 1.743707226 8.373993281 0.105400717 1.82E-11 10.74081402 -0.785567189 NVSEELDR ddPTM_HeLa_A485_30min_R1 1 NVSEELDR 8 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 107.66 0.013909 37366000 80131 63469 92938 132390 164100 76434 113330 99363 99150 165700 FALSE FALSE TRUE 97955.8645 70891.14744 127319.6337 139622.1305 147761.6278 80435.96605 89116.11968 74994.06845 119048.4955 124394.0395 0.787464294 0.569891835 1.023518765 1.122418173 1.187851351 0.646622349 0.716401847 0.602875096 0.957027331 1 16.92455783 -6.302183101 24.99334595 0.755503574 0.932737169 0.120404912 0.199783467 1076.90513 660600.6841 0.076034801 0.067057174 4.99E-07 6.302183101 0.177233596 NVSEELDR ddPTM_HeLa_A486_30min_R1 2 NVSEELDR 8 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 ; ; 99.802 0.022354 135889000 100028 246260 212852 86616 341250 252790 274470 286790 200240 166702 FALSE FALSE TRUE 93016.55375 226745.4607 295273.9948 201646.4253 298447.243 221603.34 205794.703 221494.1776 217596.9644 124958.7342 0.744378169 1.814562722 2.362972039 1.61370413 2.388366407 1.773412171 1.64690131 1.772538583 1.741350582 1 16.93109222 -9.040342152 0.887046213 0.985493615 1.806204145 0.21789265 0.428743951 11.32216088 8.23580307 0.983372913 0.138397965 9.11E-10 9.040342152 0.82071053 NVSEELDRT(ph)PPEVSK ddPTM_HeLa_A485_30min_R1 4 NVSEELDRTPPEVSK 15 1 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 1 0 NVSEELDRT(1)PPEVSK;NVSEELDRT(1)PPEVSK;NVSEELDRT(1)PPEVSK;NVS(0.003)EELDRT(0.996)PPEVS(0.001)K ;;; 146.15 9.08E-08 671080000 1923270 1849170 1485670 2544620 2683370 2043210 3155610 3198670 1799030 3522380 TRUE FALSE FALSE 2351094.776 2065414.346 2035281.157 2683626.147 2416204.261 2150189.316 2481388.145 2414191.167 2160078.819 2644315.491 0.88911281 0.781077127 0.769681668 1.014866099 0.913735244 0.813136452 0.938385814 0.912973953 0.816876363 1 21.33446288 -14 0.089048541 1.355444679 0.778974126 0.199594344 0.074028977 377.0213116 2.332801377 26.41786266 1.899518079 1.00E-14 14 -0.576470553 NVSEELDRT(ph)PPEVSK ddPTM_HeLa_A486_30min_R1 4 NVSEELDRTPPEVSK 15 1 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 1 0 NVSEELDRT(1)PPEVSK;NVSEELDRT(0.992)PPEVS(0.007)K;NVSEELDRT(1)PPEVSK;NVS(0.034)EELDRT(0.966)PPEVSK ;;; 116.69 0.00015533 1477630000 2096830 1933330 1093180 957540 2058020 2202420 2776730 2686790 1738880 2869230 TRUE FALSE FALSE 1949853.045 1780125.89 1516488.572 2229201.511 1799883.941 1930707.813 2081962.785 2075066.569 1889607.518 2150756.132 0.906589555 0.827674446 0.705095547 1.036473395 0.836861006 0.897687927 0.968014343 0.964807929 0.878578231 1 21.03641252 -5.263464447 24.99997473 0.933943318 0.814575313 0.39590873 0.071706432 193.1575923 2384590.957 0.01979078 0.031095944 5.45E-06 5.263464447 -0.119368005 NVSES(ph)PNR ddPTM_HeLa_A485_30min_R1 3 NVSESPNR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 NVS(0.029)ES(0.971)PNR;NVS(0.031)ES(0.969)PNR;NVS(0.003)ES(0.997)PNR ;; 96.24 0.0028865 264210000 1156940 1255520 1328680 1617920 1785200 1311390 1625600 1426860 1436230 2022440 TRUE FALSE FALSE 1414297.312 1402342.142 1820214.023 1706302.873 1607459.22 1380052.353 1278277.28 1076920.348 1724468.187 1518282.928 0.931511041 0.923636903 1.198863525 1.123837225 1.058734963 0.908955984 0.841922975 0.709301493 1.135801605 1 20.53400923 -6.28184361 6.078063799 0.895417998 1.053358119 0.188353043 0.128131408 0.257875697 37.06313372 0.045933717 0.041762498 5.23E-07 6.28184361 0.157940122 NVSES(ph)PNR ddPTM_HeLa_A486_30min_R1 1 NVSESPNR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 NVS(0.003)ES(0.997)PNR 113.99 0.0010469 1176000000 1437600 1321500 1218000 629580 1404400 1695100 1669800 1648300 1400700 1740700 TRUE FALSE FALSE 1336831.664 1216779.527 1689642.219 1465694.057 1228247.056 1485975.797 1251998.379 1273018.072 1522113.804 1304817.39 1.024535444 0.932528595 1.294926196 1.123294392 0.941317203 1.13883813 0.959519997 0.975629296 1.166533965 1 20.31541648 -5.69495952 24.99998478 1.030969081 1.09666499 0.074789813 0.109241846 166.3818823 62566.1924 0.032979518 0.042576363 2.02E-06 5.69495952 0.065695908 NVSES(ph)PNRK ddPTM_HeLa_A485_30min_R1 4 NVSESPNRK 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 NVS(0.001)ES(0.999)PNRK;NVS(0.014)ES(0.986)PNRK;NVS(0.003)ES(0.997)PNRK;NVS(0.005)ES(0.995)PNRK ;;; 142.51 6.83E-05 2740100000 2134150 1755800 715523 3039820 1012850 1742310 2060720 2468760 1509300 3645450 TRUE FALSE FALSE 2608884.305 1961125.537 980224.7331 3205877.669 912007.0977 1833534.657 1620430.337 1863292.739 1812202.666 2736706.405 0.953293455 0.716600631 0.358176797 1.171436462 0.333249886 0.669978575 0.592109674 0.68085226 0.662183807 1 21.38400924 -10.22779058 4.023230415 1.00025268 0.674589674 0.141343811 0.234509008 103927889.2 150392984 303069.9858 0.055289119 5.92E-11 10.22779058 -0.325663006 NVSES(ph)PNRK ddPTM_HeLa_A486_30min_R1 5 NVSESPNRK 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 NVS(0.002)ES(0.998)PNRK;NVSES(1)PNRK;NVS(0.001)ES(0.999)PNRK;NVS(0.016)ES(0.984)PNRK;NVSES(1)PNRK ;;;; 138.42 9.11E-05 1363070000 1999657 684381 849333 900869 637744 3079370 1498132 1212219 1981719 2717429 TRUE FALSE FALSE 1859491.371 630148.1571 1178217.484 2097268.559 557752.2008 2699468.638 1123283.528 936223.1963 2153495.999 2036967.091 0.912872564 0.309356081 0.578417535 1.029603556 0.273815028 1.3252392 0.551449031 0.45961626 1.057207064 1 20.95799124 -5.054040807 24.92483882 0.781112813 0.569306498 0.073339699 0.328790085 770.8120018 355514.6562 0.085122235 0.14743736 8.83E-06 5.054040807 -0.211806315 NVSES(ph)PNRKNEK ddPTM_HeLa_A485_30min_R1 5 NVSESPNRKNEK 12 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 NVS(0.002)ES(0.998)PNRKNEK;NVS(0.001)ES(0.999)PNRKNEK;NVS(0.06)ES(0.94)PNRKNEK;NVSES(1)PNRKNEK;NVSES(1)PNRKNEK ;;;; 193.32 8.05E-14 1615560000 1088778 1321130 671097 1611540 2096830 2178700 4281490 6559950 1342780 2917350 TRUE FALSE FALSE 1330972.91 1475624.661 919363.707 1699574.35 1888062.243 2292773.363 3366714.685 4951111.977 1612263.629 2190108.335 0.607720124 0.673767885 0.419780014 0.776022959 0.862086232 1.046876689 1.537236598 2.260669894 0.736157022 1 21.0625708 -6.340399002 1.765158231 1.4769551 0.619320232 0.425596383 0.387582633 0.307168051 1.892634662 0.164700898 0.141964121 4.57E-07 6.340399002 -0.857634867 NVSES(ph)PNRKNEK ddPTM_HeLa_A486_30min_R1 4 NVSESPNRKNEK 12 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 NVS(0.06)ES(0.94)PNRKNEK;NVS(0.012)ES(0.988)PNRKNEK;NVS(0.005)ES(0.995)PNRKNEK;NVS(0.008)ES(0.992)PNRKNEK ;;; 152.94 4.14E-08 632294000 585840 227210 257797 545915 542891 784470 1046900 891370 391363 1015200 TRUE FALSE FALSE 544775.6413 209205.0521 357622.9024 1270917.709 474796.5485 687690.0673 784954.547 688424.5095 425286.66 760987.3122 0.715880058 0.274912668 0.469945946 1.670090537 0.623921767 0.903681384 1.03149492 0.904646501 0.558861696 1 19.53751287 -5.077245119 24.99990968 0.949303213 0.464591206 0.340887788 0.298391915 120.7059851 39064.95375 0.078524587 0.136008651 8.37E-06 5.077245119 -0.484712007 NVSHNPLLLLT(ph)PQK ddPTM_HeLa_A485_30min_R1 2 NVSHNPLLLLTPQK 14 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 NVSHNPLLLLT(1)PQK;NVSHNPLLLLT(1)PQK ; 131.67 2.23E-05 935310000 1338100 1172770 908610 2100200 1686220 1227510 2307200 1917380 1073360 2850900 TRUE FALSE FALSE 1635755.729 1309915.25 1244742.649 2214928.608 1518334.016 1291780.526 1814247.872 1447139.549 1288773.507 2140223.097 0.764292158 0.612046123 0.581594812 1.034905478 0.709427918 0.603572837 0.847691007 0.676162943 0.602167834 1 21.02932976 -10.20430214 4.310622262 1.000097256 0.716499543 0.292138988 0.133224888 183679554.8 37.06772452 192045.9411 0.032526937 6.25E-11 10.20430214 -0.283597714 NVSHNPLLLLT(ph)PQK ddPTM_HeLa_A486_30min_R1 2 NVSHNPLLLLTPQK 14 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 NVSHNPLLLLT(1)PQK;NVSHNPLLLLT(1)PQK ; 165.17 7.92E-12 827570000 1790400 1445980 792020 740720 1456090 1767730 2272000 2037600 1451730 2737400 TRUE FALSE FALSE 1664902.206 1331395.279 1098711.355 1724433.594 1273453.615 1549645.446 1703521.569 1573682.96 1577567.125 2051937.223 0.811380674 0.648847959 0.535450765 0.840392959 0.620610417 0.755210943 0.830201602 0.76692549 0.768818416 1 20.96855516 -9.104682847 0.278939148 1.095203804 0.665362439 0.485009196 0.089037268 5.681142873 0.644535235 0.687080869 0.130612073 7.86E-10 9.104682847 -0.429841365 NVSIGIVGK ddPTM_HeLa_A485_30min_R1 2 NVSIGIVGK 9 0 F5GX11;P25786;P25786-2 F5GX11 PSMA1 Proteasome subunit alpha type-1 0 0 ; ; 130.66 0.0021557 57745000 74394 74951 79285 87172 123456 84442 118585 122091 74854 146868 FALSE FALSE TRUE 90942.68864 83715.86746 108615.8208 91933.98563 111164.2872 88863.25255 93248.346 92147.99082 89876.5112 110256.5105 0.824828287 0.759282759 0.98511934 0.833819112 1.008233316 0.805968302 0.845740044 0.835760087 0.815158314 1 16.75050432 -4.726329241 24.99964953 0.88281858 0.792055467 0.205782958 0.076516724 296.5916729 211179.7518 0.018846181 0.049857774 1.88E-05 4.726329241 -0.090763113 NVSIGIVGK ddPTM_HeLa_A486_30min_R1 2 NVSIGIVGK 9 0 F5GX11;P25786;P25786-2 F5GX11 PSMA1 Proteasome subunit alpha type-1 0 0 ; ; 147.2 0.00038596 41740000 107824 117439 86985 52324 140992 124346 154112 152734 109799 158992 FALSE FALSE TRUE 100266.0944 108132.7059 120667.9215 121812.9163 123307.4687 109005.4548 115551.5476 117959.8024 119316.4657 119179.3683 0.841304127 0.907310615 1.012490024 1.022097348 1.034637709 0.914633601 0.969559993 0.989766971 1.001150345 1 16.86277498 -4.558911171 3.413353025 0.991390334 0.849154109 0.707226341 0.031787063 0.134095284 3.11761261 0.009062109 0.033998433 2.76E-05 4.558911171 -0.142236225 NVSS(ph)FPDDATSPLQENR ddPTM_HeLa_A485_30min_R1 4 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVS(0.058)S(0.942)FPDDATSPLQENR;NVS(0.078)S(0.922)FPDDATSPLQENR;NVS(0.011)S(0.989)FPDDATSPLQENR;NVS(0.055)S(0.945)FPDDATSPLQENR ;;; 174.15 2.07E-12 614277000 321791 397259 355597 370806 507886 362549 468601 512725 351921 463879 TRUE FALSE FALSE 393372.2978 443714.9844 487147.1279 391062.1928 457319.0865 381531.505 368480.5682 386978.3898 422548.3167 348242.5024 1.129593014 1.274155169 1.39887327 1.122959404 1.313220194 1.095591441 1.058114865 1.11123251 1.213373766 1 18.40973277 -6.275794311 24.53452853 1.100267804 1.250688387 0.41248203 0.09064437 653.5681871 1117033.225 0.031501679 0.027915573 5.30E-07 6.275794311 0.150420583 NVSS(ph)FPDDATSPLQENR ddPTM_HeLa_A486_30min_R1 4 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVS(0.001)S(0.999)FPDDATSPLQENR;NVS(0.001)S(0.999)FPDDATSPLQENR;NVS(0.09)S(0.91)FPDDATSPLQENR;NVS(0.001)S(0.999)FPDDATSPLQENR ;;; 280.63 1.35E-59 624330000 507905 540770 410554 200327 637864 516582 613803 608830 442536 547892 TRUE FALSE FALSE 472303.4823 497917.4157 569531.5038 466371.38 557857.1493 452851.3651 460222.9973 470212.6997 480895.3768 410696.277 1.150006729 1.212373824 1.386746206 1.135562716 1.358320444 1.102642976 1.120592085 1.144915905 1.170927042 1 18.64771234 -6.293857498 24.96244855 1.117671353 1.247984045 0.40329444 0.085202481 704.4489166 542434.355 0.028885838 0.025476315 5.08E-07 6.293857498 0.130312693 NVSS(ph)YEK ddPTM_HeLa_A486_30min_R1 2 NVSSYEK 7 0 A0A0U1RR22;Q9UNF0 A0A0U1RR22 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 1 0 NVS(0.025)S(0.975)YEK;NVS(0.038)S(0.962)YEK ; 89.827 0.0056581 126500000 1448160 1310080 659190 630900 1270390 1589340 2016210 1794570 1073220 2138320 TRUE FALSE FALSE 1346651.462 1206264.49 914446.0217 1468767.084 1111045.84 1393263.39 1511732.933 1385985.586 1166247.574 1602870.754 0.840149749 0.752565038 0.570505151 0.916335319 0.693159968 0.869230028 0.94314088 0.864689547 0.72759926 1 20.61222667 -6.324437395 8.790798047 0.876665665 0.75326289 0.260341782 0.10639463 0.610860892 81.03286419 0.037090339 0.032710443 4.74E-07 6.324437395 -0.123402775 NVSSFPDDAT(ph)SPLQENR ddPTM_HeLa_A486_30min_R1 1 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVSSFPDDAT(0.632)S(0.368)PLQENR 95.767 0.0031067 4687100000 785170 902100 681820 317290 962370 837520 1058600 1002300 739670 981010 TRUE FALSE FALSE 730133.6376 830614.3106 945838.9638 738667.1549 841660.5809 734195.2977 793727.0833 774098.1701 803785.1912 735358.7107 0.992894525 1.129536237 1.286228 1.004499089 1.144557845 0.998417897 1.079374014 1.052681037 1.093051839 1 19.48808865 NVSSFPDDATS(ph)PLQENR ddPTM_HeLa_A485_30min_R1 7 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVSSFPDDAT(0.001)S(0.999)PLQENR;NVSSFPDDAT(0.001)S(0.999)PLQENR;NVSSFPDDAT(0.004)S(0.996)PLQENR;NVSSFPDDAT(0.184)S(0.816)PLQENR;NVSSFPDDAT(0.002)S(0.998)PLQENR;NVSSFPDDAT(0.003)S(0.997)PLQENR;NVSSFPDDAT(0.04)S(0.96)PLQENR ;;;;;; 474.43 1.31E-218 11152880000 1935080 2191490 2134660 2272080 3280720 1929650 2788990 2606140 2047740 3181920 TRUE FALSE FALSE 2365531.87 2447765.692 2924359.565 2396197.977 2954079.997 2030683.49 2193099.503 1966980.079 2458702.635 2388725.903 0.990290208 1.024716017 1.224234041 1.003128058 1.236676001 0.850111554 0.918104291 0.823443191 1.029294584 1 21.18780989 -6.277965368 24.99878203 0.912775518 1.093845068 0.436330297 0.097084617 742.3638136 1122966.574 0.032917942 0.029112427 5.27E-07 6.277965368 0.18106955 NVSSFPDDATS(ph)PLQENR ddPTM_HeLa_A486_30min_R1 5 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVSSFPDDAT(0.028)S(0.972)PLQENR;NVSSFPDDATS(1)PLQENR;NVSSFPDDAT(0.022)S(0.978)PLQENR;NVSSFPDDATS(1)PLQENR;NVSSFPDDAT(0.001)S(0.999)PLQENR ;;;; 441.47 1.93E-193 9099030000 2490640 2548450 1980310 997020 2810600 2590280 3112370 3057870 2258880 2846400 TRUE FALSE FALSE 2316058.998 2346501.541 2747139.067 2321112.947 2458068.34 2270717.59 2333622.107 2361659.754 2454681.537 2133642.913 1.085495133 1.099763005 1.287534596 1.087863828 1.152052354 1.064244432 1.093726646 1.106867386 1.15046502 1 21.02488732 -6.248270407 24.26677272 1.09040653 1.14518268 0.169083823 0.064783535 1094.349066 2016580.462 0.021457084 0.021327381 5.65E-07 6.248270407 0.05477615 NVST(ph)GSAENEEKSEVQAIIESTPELDMDKDLSGYK ddPTM_HeLa_A486_30min_R1 1 NVSTGSAENEEKSEVQAIIESTPELDMDKDLSGYK 35 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 NVS(0.078)T(0.461)GS(0.461)AENEEKSEVQAIIESTPELDMDKDLSGYK 147.94 1.83E-09 212640000 17001 17035 6949.7 24766 18152 39052 52988 51280 18820 45750 TRUE FALSE FALSE 15809.31769 15685.08456 9640.809959 57656.4996 15875.2069 34234.16129 39729.84195 39604.66343 20451.33275 34293.90222 0.460995007 0.457372406 0.281123154 1.681246399 0.462916317 0.998257972 1.158510388 1.154860219 0.596354787 1 15.06566445 -5.199192969 24.99999425 0.997128193 0.405583701 0.439874948 0.31403773 210.4899273 84538.35959 0.081426303 0.14103449 6.32E-06 5.199192969 -0.591544492 NVSTGS(ph)AENEEK ddPTM_HeLa_A485_30min_R1 3 NVSTGSAENEEK 12 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 NVST(0.001)GS(0.999)AENEEK;NVSTGS(1)AENEEK;NVSTGS(1)AENEEK ;; 257.45 2.63E-33 2352930000 1799490 1490270 887310 2059670 1689640 1279340 2182050 1766480 884150 2552870 TRUE FALSE FALSE 2199780.342 1664544.113 1215562.893 2172184.557 1521413.509 1346324.264 1715837.192 1333248.01 1061590.795 1916486.491 1.147819383 0.868539445 0.634266351 1.133420229 0.793855587 0.702496089 0.895303567 0.695673054 0.55392553 1 20.8700324 -5.977991971 24.98359719 0.757195658 0.923888649 0.183827822 0.175247433 428.6092367 486556.4801 0.054042708 0.061274496 1.05E-06 5.977991971 0.166692991 NVSTGS(ph)AENEEK ddPTM_HeLa_A486_30min_R1 4 NVSTGSAENEEK 12 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 NVSTGS(1)AENEEK;NVST(0.001)GS(0.999)AENEEK;NVSTGS(1)AENEEK;NVSTGS(1)AENEEK ;;; 224.55 3.93E-23 2656810000 3470530 2406340 1061060 1084150 1561480 2497230 3067610 2501800 1836480 4723940 TRUE FALSE FALSE 3227263.769 2215652.855 1471930.848 2523955.99 1365624.618 2189147.153 2300061.532 1932194.754 1995667.565 3541034.676 0.911390049 0.625707754 0.41567818 0.712773588 0.385656946 0.618222455 0.649545046 0.545658241 0.563583175 1 21.75573954 -10.27748136 5.197365837 1.000071123 0.595232015 0.416501503 0.140641266 0.00011338 1.58E-05 0.133205698 0.032301475 5.28E-11 10.27748136 -0.404839108 NVT(ph)PNSYAEPLAAPGGGER ddPTM_HeLa_A486_30min_R1 1 NVTPNSYAEPLAAPGGGER 19 0 Q9NYD6 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 NVT(0.966)PNS(0.034)YAEPLAAPGGGER 89.659 0.0004213 0 44950 73436 70290 15774 90661 56896 48930 74387 53756 49696 TRUE FALSE FALSE 41799.23712 67616.66391 97508.17043 36722.66917 79289.452 49876.75 36687.19647 57450.70396 58415.61336 37251.79813 1.122073006 1.815124834 2.617542651 0.985795881 2.128473147 1.338908522 0.98484364 1.542226331 1.568128689 1 15.18502245 -6.427654769 10.46842004 1.296670599 1.745458966 0.185414814 0.468724965 0.934255428 97.982921 0.163674533 0.14426322 3.74E-07 6.427654769 0.448788368 NVTS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 NVTSPTR 7 0 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 NVT(0.276)S(0.573)PT(0.151)R;NVT(0.093)S(0.79)PT(0.117)R ; 72.478 0.019058 1178180000 2008530 2685700 2478700 2184800 3429800 2162600 2951800 3091900 2180200 2906300 TRUE FALSE FALSE 2455320.569 2999769.253 3395674.277 2304150.092 3088317.069 2275830.392 2321123.816 2333606.677 2617746.142 2181812.896 1.125357987 1.374897571 1.556354481 1.05607135 1.415482086 1.043091456 1.063850993 1.069572318 1.199803222 1 21.05709596 -6.272488198 24.68256609 1.078898568 1.309545213 0.402157432 0.140364097 646.9083218 1445159.647 0.048662311 0.04332232 5.34E-07 6.272488198 0.230646646 NVTS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 NVTSPTR 7 0 E9PKU9;B7Z503;Q9BSF8;Q9BSF8-2 E9PKU9 BTBD10 BTB/POZ domain-containing protein 10 1 0 NVT(0.079)S(0.886)PT(0.035)R;NVT(0.127)S(0.859)PT(0.013)R ; 80.916 0.011953 1187600000 2120800 2096800 1645780 842770 2361300 2079800 2526500 2525100 1796620 2607400 TRUE FALSE FALSE 1972142.872 1930641.932 2283070.092 1962011.151 2065123.736 1823215.422 1894342.977 1950189.853 1952352.468 1954490.069 1.009031923 0.987798282 1.168115473 1.003848105 1.056604876 0.932834324 0.969226198 0.997799827 0.998906313 1 20.89836082 -6.240661703 24.83786 0.978957873 1.046442107 0.299044928 0.049978374 971.5768968 1161434.44 0.016721718 0.016704807 5.75E-07 6.240661703 0.067484234 NVVHQLS(ph)VTLEDLYNGATR ddPTM_HeLa_A485_30min_R1 1 NVVHQLSVTLEDLYNGATR 19 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 NVVHQLS(0.788)VT(0.212)LEDLYNGATR 48.907 0.031214 7017100 5520.2 5082.5 4950.2 4528.8 6093.6 3806.2 6641.4 5109.8 3103 8165.8 TRUE FALSE FALSE 6748.149446 5676.854163 6781.484975 4776.196876 5486.899788 4005.486746 5222.410635 3856.613538 3725.743638 6130.21634 1.10080119 0.926044669 1.106239095 0.779123706 0.8950581 0.653400553 0.851912942 0.629115405 0.607767072 1 12.58172227 -5.500244904 1.242410189 0.734633374 1.047159616 0.4519653 0.130294486 0.401110433 1.255628529 0.046337843 0.089181196 3.16E-06 5.500244904 0.312526241 NVVHQLS(ph)VTLEDLYNGATR ddPTM_HeLa_A486_30min_R1 1 NVVHQLSVTLEDLYNGATR 19 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 NVVHQLS(0.992)VT(0.008)LEDLYNGATR 89.946 0.00045423 8443800 10334 12230 8341.1 4548.3 13106 13906 14373 13009 9755.9 11356 TRUE FALSE FALSE 9609.639965 11260.85026 11570.9973 10588.67226 11462.12327 12190.41911 10776.72338 10047.13468 10601.54927 8512.383685 1.128901177 1.322878606 1.359313411 1.243913885 1.346523335 1.43208055 1.266005361 1.180296267 1.245426623 1 13.05534746 -8.261215282 0.910681734 1.002339952 1.305133493 0.533970514 0.081349965 0.749158675 1.219325779 0.080591753 0.027198415 5.48E-09 8.261215282 0.302793541 NVVHQLSVTLEDLYNGATR ddPTM_HeLa_A485_30min_R1 1 NVVHQLSVTLEDLYNGATR 19 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 286.7 1.27E-71 19302000 13447 16859 15475 16508 23711 14748 22876 18975 13593 26282 FALSE FALSE TRUE 16438.23876 18830.5134 21199.84647 17409.79024 21350.24959 15520.18248 17988.35572 14321.3515 16320.99042 19730.38108 0.8331435 0.954391774 1.074477294 0.882384895 1.082100214 0.786613417 0.911708479 0.725852757 0.827200972 1 14.2681312 -6.280883698 24.99856165 0.836980505 0.966152621 0.24884252 0.098572995 1050.799475 1350954.844 0.033370804 0.029469937 5.24E-07 6.280883698 0.129172116 NVVHQLSVTLEDLYNGATR ddPTM_HeLa_A486_30min_R1 1 NVVHQLSVTLEDLYNGATR 19 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 241.8 1.99E-37 20168000 10266 10519 9677.8 3725.3 13056 11906 14557 14775 10667 12127 FALSE FALSE TRUE 9546.406414 9685.43613 13425.30334 8672.686666 11418.39474 10437.15877 10914.68463 11411.05504 11591.62415 9090.320266 1.050172726 1.065466985 1.476879026 0.954057328 1.25610478 1.148161832 1.200693079 1.25529736 1.275161249 1 13.15011541 NVYS(ph)SSR ddPTM_HeLa_A485_30min_R1 5 NVYSSSR 7 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 NVYS(0.496)S(0.496)S(0.008)R;NVYS(0.495)S(0.495)S(0.01)R;NVYS(0.481)S(0.481)S(0.037)R;NVYS(0.488)S(0.488)S(0.024)R;NVY(0.001)S(0.897)S(0.097)S(0.005)R ;;;; 123.21 0.0017906 2408191000 1804500 2129180 1958470 2167520 2771330 1796340 2592520 2420470 1815030 2717040 TRUE FALSE FALSE 2205904.8 2378169.08 2682989.552 2285926.129 2495406.654 1890393.585 2038606.923 1826845.937 2179289.873 2039731.931 1.081467994 1.165922366 1.315363804 1.120699291 1.223399318 0.926785307 0.999448453 0.895630406 1.068419746 1 20.95994813 -6.26024555 24.99971507 0.972870658 1.18458577 0.663421524 0.07234252 63.38067533 1327248.761 0.02408971 0.022833246 5.49E-07 6.26024555 0.211715112 NVYS(ph)SSR ddPTM_HeLa_A486_30min_R1 5 NVYSSSR 7 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 NVYS(0.919)S(0.081)SR;NVYS(0.856)S(0.14)S(0.004)R;NVYS(0.499)S(0.499)S(0.002)R;NVYS(0.912)S(0.088)SR;NVYS(0.459)S(0.459)S(0.083)R ;;;; 122.28 0.0018556 2943800000 1642830 1620720 1322550 638813 1651080 1597100 1763430 1847390 1501190 2002180 TRUE FALSE FALSE 1527676.101 1492288.245 1834676.779 1487188.948 1443986.151 1400066.04 1322201.162 1426779.625 1631314.358 1500821.096 1.017893542 0.994314545 1.222448688 0.990916873 0.962130766 0.932866711 0.880985193 0.950666025 1.086947913 1 20.51732058 -5.504096084 24.74059341 0.961743411 1.075970875 0.297372428 0.074909832 807.0834806 1063093.466 0.021747738 0.031627676 3.13E-06 5.504096084 0.114227464 NVYS(ph)SSRYDDYDR ddPTM_HeLa_A485_30min_R1 2 NVYSSSRYDDYDR 13 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 NVYS(0.686)S(0.277)S(0.037)RYDDYDR;NVY(0.001)S(0.786)S(0.205)S(0.008)RYDDYDR ; 120.9 3.89E-05 736150000 345450 531070 459760 455160 839160 570900 809350 1056200 441560 646490 TRUE FALSE FALSE 422294.1607 593174.0168 629844.3562 480024.2383 755610.2839 600791.4412 636425.7607 797165.2939 530177.0418 485331.9408 0.870114091 1.222202717 1.297759952 0.989063768 1.556893788 1.237898005 1.311320577 1.642515621 1.092400885 1 18.88861228 -3.712561039 1.144893735 1.301384021 3.11E-23 0.236324243 0.20440714 6.668710059 3.047794447 0.059440916 14.1105649 0.000193838 3.712561039 -1.301384021 NVYS(ph)SSRYDDYDR ddPTM_HeLa_A486_30min_R1 2 NVYSSSRYDDYDR 13 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 NVYS(0.959)S(0.033)S(0.008)RYDDYDR;NVYS(0.665)S(0.333)S(0.002)RYDDYDR ; 145.33 4.13E-06 465960000 481130 442860 460790 251530 856640 500220 736240 804720 426260 641330 TRUE FALSE FALSE 447405.2716 407766.1607 639220.2284 585574.5516 749192.2233 438507.9423 552024.9648 621502.8229 463208.56 480736.7936 0.930665756 0.848210842 1.329667787 1.21807725 1.55842497 0.912158063 1.148289401 1.292813097 0.963538814 1 18.8748877 -4.750100618 24.99851935 1.192809678 0.889438149 0.280454189 0.183556915 261.8833253 577362.2807 0.046170898 0.119844854 1.78E-05 4.750100618 -0.303371529 NVYSS(ph)SR ddPTM_HeLa_A485_30min_R1 2 NVYSSSR 7 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 NVYS(0.493)S(0.498)S(0.009)R;NVYS(0.257)S(0.724)S(0.019)R ; 126.82 0.0017332 1114330000 827850 945360 978070 1009200 1305700 850270 1227000 1095500 854990 1289190 TRUE FALSE FALSE 1012002.376 1055911.628 1339898.794 1064330.041 1175699.923 894788.8224 964841.4263 826826.9073 1026578.651 967818.6588 1.045652889 1.091022186 1.384452327 1.099720522 1.214793611 0.924541818 0.99692377 0.854320073 1.060713845 1 19.88437723 -6.262766076 24.99987919 0.960046392 1.171228872 0.498183443 0.100103356 100.4403136 1892650.599 0.034294424 0.031871637 5.46E-07 6.262766076 0.21118248 NVYSS(ph)SR ddPTM_HeLa_A486_30min_R1 1 NVYSSSR 7 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 NVYS(0.068)S(0.927)S(0.005)R 147.24 0.0011184 883120000 891530 889190 661690 298820 848210 894880 1015600 1023000 809770 1119500 TRUE FALSE FALSE 829038.3509 818727.346 917914.0887 695668.0615 741819.5926 784478.8041 761486.1381 790085.2319 879961.5156 839169.9133 0.987926685 0.975639537 1.093835794 0.828995476 0.883992122 0.934827133 0.907427836 0.941508054 1.048609467 1 19.67860343 -10.35017987 13.51609815 0.999989895 0.952192142 0.029638302 0.073098673 1.59E-10 0 0.073566457 0.017842487 4.46E-11 10.35017987 -0.047797753 NWTEDMEGGIS(ph)SPVKK ddPTM_HeLa_A485_30min_R1 2 NWTEDMEGGISSPVKK 16 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.902)S(0.098)PVKK;NWTEDMEGGIS(0.614)S(0.386)PVKK ; 114.37 0.00016675 626590000 622037 443738 260566 987440 681332 562812 1051250 882000 386774 1407430 TRUE FALSE FALSE 760406.9846 495629.2991 356960.2065 1041381.347 613496.1938 592279.966 826641.8496 665688.1171 464395.9941 1056583.603 0.719684635 0.469086684 0.337843788 0.985611876 0.580641411 0.560561383 0.7823724 0.630038281 0.439526028 1 20.0109755 -10.59967726 2.763658277 1.030243621 0.613595743 0.30472843 0.17593399 32418583.57 31640794.91 7121636.226 0.044590894 2.51E-11 10.59967726 -0.416647878 NWTEDMEGGIS(ph)SPVKK ddPTM_HeLa_A486_30min_R1 1 NWTEDMEGGISSPVKK 16 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.583)S(0.417)PVKK 56.304 0.021 302940000 304760 235250 100130 158650 202110 328280 388700 361750 213740 450250 TRUE FALSE FALSE 283397.8978 216607.9332 138903.0176 369345.2177 176759.4792 287780.1513 291443.1488 279387.4219 232267.1553 337504.4694 0.839686355 0.641792785 0.411559046 1.094341709 0.523724855 0.852670638 0.86352382 0.827803621 0.688189865 1 18.36454708 -14 0.101380915 1.80939211 0.579965328 0.152646854 0.182705999 335.1820104 2.300925216 57.08343297 2.892758882 1.00E-14 14 -1.229426783 NWTEDMEGGISS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 NWTEDMEGGISSPVK 15 0 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGISS(1)PVK;NWTEDMEGGIS(0.013)S(0.987)PVK ; 297.55 2.61E-67 390040000 609190 549000 381700 969280 781120 541070 957790 844510 487260 1173950 TRUE FALSE FALSE 744702.2138 613200.7743 522906.7139 1022229.312 703348.9501 569399.5885 753150.3421 637392.5984 585048.6126 881305.8699 0.844998586 0.695786554 0.593331704 1.159902988 0.798075871 0.646086232 0.854584507 0.723236529 0.663842864 1 19.74928329 -11.31807844 2.25027415 2.160336294 0.776780647 0.164128644 0.151940731 22707059.99 2538991.771 134392759.2 0.038323134 4.81E-12 11.31807844 -1.383555647 NWTEDMEGGISS(ph)PVK ddPTM_HeLa_A486_30min_R1 5 NWTEDMEGGISSPVK 15 0 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.007)S(0.993)PVK;NWTEDMEGGIS(0.015)S(0.985)PVK;NWTEDMEGGIS(0.021)S(0.979)PVK;NWTEDMEGGIS(0.201)S(0.799)PVK;NWTEDMEGGIS(0.006)S(0.994)PVK ;;;; 318.82 3.67E-78 1153800000 2573170 2269550 1140240 1187730 2039290 2593650 3412380 3079240 1998070 3886910 TRUE FALSE FALSE 2392804.071 2089702.592 1581771.465 2765095.465 1783503.233 2273671.833 2558566.432 2378164.271 2171264.316 2913602.436 0.82125277 0.71722297 0.542892004 0.949029775 0.612129922 0.780364474 0.87814535 0.816228131 0.745216399 1 21.4743726 -13.27399589 0.157418357 1.70383313 0.687825695 0.304937781 0.111473103 124.2238587 1.396754299 27.80543839 0.501748333 5.32E-14 13.27399589 -1.016007435 NWTEDMEGGISS(ph)PVKK ddPTM_HeLa_A485_30min_R1 7 NWTEDMEGGISSPVKK 16 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.27)S(0.73)PVKK;NWTEDMEGGIS(0.097)S(0.903)PVKK;NWTEDMEGGIS(0.085)S(0.915)PVKK;NWTEDMEGGIS(0.023)S(0.977)PVKK;NWTEDMEGGIS(0.049)S(0.951)PVKK;NWTEDMEGGIS(0.243)S(0.757)PVKK;NWTEDMEGGIS(0.189)S(0.811)PVKK ;;;;;; 248.78 3.27E-42 8489460000 4708700 3264800 2045500 7766070 5023480 4154670 8183780 6837580 3340030 10729250 TRUE FALSE FALSE 5756134.07 3646589.96 2802215.57 8190310.739 4523324.693 4372202.097 6435248.548 5160652.784 4010343.384 8054645.432 0.714635314 0.452731283 0.347900549 1.016843113 0.561579616 0.54281745 0.798948706 0.640705147 0.497891983 1 22.94138965 -11.25228896 2.277936915 2.427051036 0.620108393 0.28623296 0.180330376 11685153.6 2153853.692 85700168.31 0.044989676 5.59E-12 11.25228896 -1.806942642 NWTEDMEGGISS(ph)PVKK ddPTM_HeLa_A486_30min_R1 5 NWTEDMEGGISSPVKK 16 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.249)S(0.751)PVKK;NWTEDMEGGIS(0.089)S(0.911)PVKK;NWTEDMEGGIS(0.072)S(0.928)PVKK;NWTEDMEGGIS(0.051)S(0.949)PVKK;NWTEDMEGGIS(0.089)S(0.911)PVKK ;;;; 238.45 5.69E-41 18139980000 9064020 6742120 2521723 4029020 5433140 8327060 12456070 10511440 5249590 13368470 TRUE FALSE FALSE 8428679.005 6207849.857 3498201.68 9379762.175 4751664.919 7299752.001 9339429.539 8118214.575 5704628.688 10020918.1 0.841108462 0.619489132 0.349089938 0.936018245 0.474174609 0.728451418 0.931993401 0.810126826 0.56927206 1 23.25651136 -6.522102673 24.97684963 0.814624912 0.638343222 0.175462863 0.186830398 53.39948656 1718716.1 0.069046994 0.054150736 3.01E-07 6.522102673 -0.176281689 NY(ph)EY(ph)KKPEER ddPTM_HeLa_A485_30min_R1 1 NYEYKKPEER 10 2 O95373;E9PLB2 O95373 IPO7 Importin-7 2 0 NY(1)EY(1)KKPEER 57.348 0.031192 1962600000 20931 12484 15087 21579 26604 12115 20094 27927 10354 10765 TRUE FALSE FALSE 25587.02874 13943.8952 20668.30912 22757.80613 23955.21235 12749.32267 15800.75275 21077.85946 12431.95283 8081.483615 3.166130126 1.725412791 2.557489455 2.816043095 2.964209728 1.577596797 1.955179705 2.608167073 1.538325562 1 12.98040445 -8.375079622 0.352676442 0.807071139 2.623917984 0.474735618 0.499019774 2.277370182 0.623823865 1.311807241 0.503184447 4.22E-09 8.375079622 1.816846845 NYAES(ph)DHS(ph)EDEDNDNNSATAEESTKK ddPTM_HeLa_A485_30min_R1 1 NYAESDHSEDEDNDNNSATAEESTKK 26 1 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 2 0 NY(0.012)AES(0.994)DHS(0.994)EDEDNDNNSATAEESTKK 76.956 0.011701 82304000 58028 40001 46171 93220 74714 59667 112100 99071 51038 137160 TRUE FALSE FALSE 70936.12841 44678.76899 63251.57424 98312.37255 67275.21182 62791.07186 88148.91923 74773.68191 61280.85845 102968.5362 0.68891072 0.433907003 0.6142806 0.954780714 0.65335698 0.609808337 0.856076258 0.726179905 0.595141591 1 16.65184404 -14 0.132063342 1.98630721 0.564068509 0.322581234 0.137177779 184.1859675 1.52342991 48.81119052 1.050419823 1.00E-14 14 -1.4222387 NYAES(ph)DHS(ph)EDEDNDNNSATAEESTKK ddPTM_HeLa_A486_30min_R1 1 NYAESDHSEDEDNDNNSATAEESTKK 26 1 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 2 0 NYAES(1)DHS(1)EDEDNDNNSATAEESTKK 151.5 4.80E-09 200570000 271450 226410 100060 138640 214410 286470 366470 360840 187950 439550 TRUE FALSE FALSE 252422.7568 208468.447 138805.9117 322760.9265 187516.6985 251128.244 274775.3299 278684.6091 204241.6573 329483.819 0.766115791 0.632712246 0.421282939 0.979595682 0.569122633 0.76218688 0.833956978 0.845821837 0.619883726 1 18.32984809 -13.99999976 0.112206747 1.913583794 0.558778089 0.253358684 0.150368176 223.5612019 1.656088541 46.7940656 1.749110638 1.00E-14 13.99999976 -1.354805705 NYDPKVT(ph)PDPER ddPTM_HeLa_A485_30min_R1 2 NYDPKVTPDPER 12 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 NYDPKVT(1)PDPER;NY(0.001)DPKVT(0.999)PDPER ; 69.729 0.014755 1276420000 874880 792160 566910 1363500 1199000 887000 1550560 1543230 712170 1782100 TRUE FALSE FALSE 1069494.038 884796.2211 776633.6001 1437984.552 1079623.35 933441.9484 1219270.189 1164750.423 855095.9866 1337855.267 0.799409371 0.661354216 0.580506441 1.074843137 0.806980678 0.697715195 0.911361804 0.870610186 0.63915433 1 20.35149062 -14 0.131427894 1.631729915 0.708134362 0.157018879 0.141206477 286.6859297 2.364084589 49.05466419 1.074354612 1.00E-14 14 -0.923595553 NYDPKVT(ph)PDPER ddPTM_HeLa_A486_30min_R1 1 NYDPKVTPDPER 12 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 NYDPKVT(1)PDPER 61.375 0.03217 750340000 549450 491150 246990 290250 483630 592330 754500 706900 394280 865630 TRUE FALSE FALSE 510936.3924 452229.4853 342631.1426 675716.6684 422968.6157 519254.347 565716.1197 545954.3015 428456.5079 648870.6137 0.787424151 0.69694863 0.528042318 1.04137351 0.651853554 0.800243278 0.871847342 0.841391627 0.66031116 1 19.3075713 -14 0.145808092 1.777616936 0.693500619 0.207842323 0.134945473 217.4243944 1.905684309 49.55581458 0.730766379 1.00E-14 14 -1.084116316 NYEGS(ph)PIKVTLATLK ddPTM_HeLa_A485_30min_R1 1 NYEGSPIKVTLATLK 15 1 E5RI98 E5RI98 NPM1 1 0 NYEGS(0.998)PIKVT(0.002)LATLK 116.39 6.60E-05 78212000 51596 55041 35902 158070 88225 40083 62691 53627 56112 114970 TRUE FALSE FALSE 63073.3522 61477.56616 49183.64381 166704.9638 79441.00922 42181.6839 49296.55571 40474.89417 67373.16371 86310.09487 0.730776073 0.712287088 0.569848103 1.931465422 0.920413879 0.488722483 0.571156315 0.468947395 0.780594249 1 16.39724169 -6.153689005 6.436283282 0.624474771 0.993793942 0.142557341 0.376860964 0.460805479 23.84529948 0.130864162 0.131033621 7.02E-07 6.153689005 0.369319172 NYGS(ph)PLISGSTPK ddPTM_HeLa_A485_30min_R1 2 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NYGS(0.98)PLIS(0.02)GSTPK;NYGS(0.996)PLIS(0.004)GSTPK ; 150.39 6.02E-08 444270000 354750 358020 259020 489490 492330 326280 518730 515220 300260 619900 TRUE FALSE FALSE 433662.9136 399887.3246 354842.2767 516229.5992 443311.8965 343363.5163 407899.0979 388861.4872 360519.4279 465370.3384 0.931866253 0.859288381 0.762494399 1.109287715 0.952600241 0.737828538 0.87650429 0.835595772 0.774693611 1 18.82801973 -6.223614794 24.9933491 0.836622831 0.920982308 0.121952997 0.103624745 1201.588236 793973.65 0.034679642 0.03467878 5.98E-07 6.223614794 0.084359477 NYGS(ph)PLISGSTPK ddPTM_HeLa_A486_30min_R1 2 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NYGS(1)PLISGSTPK;NYGS(0.992)PLIS(0.008)GSTPK ; 148.18 7.41E-08 554880000 449820 424280 238295 217222 428950 468690 623420 556880 399110 632110 TRUE FALSE FALSE 418289.9409 390658.5076 330569.2058 505703.7938 375147.0912 410867.7931 467433.7221 430090.5806 433705.1761 473825.5417 0.882793147 0.82447752 0.697660165 1.067278459 0.791740964 0.867128842 0.986510184 0.907698177 0.915326714 1 18.85399644 -6.514673401 0.254673395 1.007383245 0.785125846 0.212213684 0.091013816 4.630592247 0.775493877 0.181097485 0.356862845 3.06E-07 6.514673401 -0.222257399 NYGYNPS(ph)PVKPEGLR ddPTM_HeLa_A485_30min_R1 4 NYGYNPSPVKPEGLR 15 1 E9PRF4;Q15047-3;Q15047 E9PRF4 SETDB1 Histone-lysine N-methyltransferase SETDB1 1 0 NYGYNPS(0.999)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR ;;; 154.19 1.55E-08 2965590000 2316040 2023020 1420500 3832130 3138490 2157410 4246080 3379110 1718500 5118190 TRUE FALSE FALSE 2831235.108 2259594.591 1946002.062 4041469.558 2826010.916 2270368.652 3338870.321 2550377.974 2063387.187 3842319.426 0.736855736 0.58808088 0.506465456 1.051830707 0.73549609 0.590884932 0.868972605 0.663760008 0.537016046 1 21.87354603 -10.4619344 3.089237647 1.006494192 0.701281707 0.251220963 0.156456802 140992511.3 172066058.8 7906621.774 0.038945394 3.45E-11 10.4619344 -0.305212484 NYGYNPS(ph)PVKPEGLR ddPTM_HeLa_A486_30min_R1 4 NYGYNPSPVKPEGLR 15 1 E9PRF4;Q15047-3;Q15047 E9PRF4 SETDB1 Histone-lysine N-methyltransferase SETDB1 1 0 NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR ;;; 161.08 3.50E-12 3820640000 2362930 1950440 865730 1133500 1783150 2225580 3139870 2843850 1553170 3496800 TRUE FALSE FALSE 2197300.809 1795880.031 1200963.841 2638845.284 1559490.7 1951010.568 2354241.316 2196367.436 1687800.026 2621178.52 0.838287355 0.685142205 0.45817705 1.006740008 0.594957836 0.744325712 0.89816138 0.837931266 0.643908842 1 21.32178418 -14 0.167073173 1.970681262 0.68350247 0.19770845 0.151550781 213.2479433 1.995983816 68.64217699 0.567452447 1.00E-14 14 -1.287178792 NYILDQTNVYGS(ph)AQR ddPTM_HeLa_A485_30min_R1 2 NYILDQTNVYGSAQR 15 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 NYILDQTNVYGS(1)AQR;NYILDQTNVYGS(1)AQR ; 230.82 7.88E-32 0 166539 195568 163110 213525 257790 158754 256010 242202 161436 269820 TRUE FALSE FALSE 203585.026 218437.9764 223451.1766 225189.3301 232123.5224 167066.114 201311.3721 182801.5797 193834.7244 202558.8397 1.005066115 1.078392712 1.103142064 1.111723045 1.145956024 0.824778194 0.993841456 0.902461626 0.956930464 1 17.62798152 -6.249296726 24.97198585 0.93314614 1.090338763 0.643312944 0.057037571 460.0647403 946147.2093 0.018366676 0.018234034 5.63E-07 6.249296726 0.157192623 NYILDQTNVYGS(ph)AQR ddPTM_HeLa_A486_30min_R1 2 NYILDQTNVYGSAQR 15 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 NYILDQTNVYGS(1)AQR;NYILDQTNVYGS(1)AQR ; 282.85 1.52E-58 350210000 463310 509970 385640 194943 482180 480120 612790 555250 469000 616580 TRUE FALSE FALSE 430834.3615 469558.1199 534970.1358 453837.1559 421700.4883 420887.6759 459463.4606 428831.696 509653.2976 462184.3547 0.932169939 1.015954164 1.15748214 0.981939677 0.912407536 0.910648904 0.994112968 0.927836894 1.102705646 1 18.8181089 -4.249567081 22.53692183 0.99667787 0.932169785 0.066578103 0.075463807 1564.981964 2970544.684 0.019960998 0.284372747 5.63E-05 4.249567081 -0.064508085 NYISQYSEIAIQMMMHMQPK ddPTM_HeLa_A485_30min_R1 2 NYISQYSEIAIQMMMHMQPK 20 0 P07602 P07602 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D 0 0 ; ; 178.72 1.03E-18 9521500 6823.3 8605.7 4723.36 9192.4 10143.8 7248.8 14031.4 13919.2 5488.94 13488.2 FALSE FALSE TRUE 8341.119545 9612.061755 6470.727419 9694.557536 9133.847655 7628.335959 11033.47676 10505.49438 6590.51991 10125.83997 0.823745938 0.949260682 0.639031175 0.957407737 0.902033577 0.753353399 1.089635704 1.037493621 0.650861551 1 13.30575397 -6.742093512 24.99995261 0.9476223 0.841919606 0.121913653 0.140309078 544.870146 704115.5996 0.052959501 0.040959584 1.81E-07 6.742093512 -0.105702694 NYLPAINGIVFLVDCADHSR ddPTM_HeLa_A486_30min_R1 2 NYLPAINGIVFLVDCADHSR 20 0 Q9NR31-2;Q9NR31;Q5SQT8 Q9NR31-2 SAR1A GTP-binding protein SAR1a 0 0 ; ; 170.19 1.36E-15 10350700 11711.8 13898.9 10164.3 6815.8 15751.1 12898.4 16433.2 17439.1 12932.4 17496.8 FALSE FALSE TRUE 10890.8633 12797.50055 14100.18917 15867.52685 13775.45016 11307.12655 12321.43955 13468.59762 14053.39084 13115.48739 0.830381897 0.975754858 1.075079312 1.209831276 1.050319348 0.862120195 0.939457237 1.02692315 1.07151114 1 13.6789838 -4.325860082 3.242330288 1.028223644 0.81553938 0.325607366 0.086090497 0.380899303 6.523325793 0.024906365 0.184208149 4.72E-05 4.325860082 -0.212684265 NYPS(ph)QEELIK ddPTM_HeLa_A485_30min_R1 2 NYPSQEELIK 10 0 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;K7EPC7 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NYPS(1)QEELIK;NYPS(1)QEELIK ; 147.96 4.51E-06 440650000 732620 657710 507440 1098950 921560 733760 1118490 949910 641330 1452180 TRUE FALSE FALSE 895588.7915 734623.4632 695163.1723 1158982.856 829806.2506 772178.539 879515.4743 716943.0831 770039.0484 1090178.251 0.821506749 0.673856282 0.6376601 1.063113169 0.761165662 0.708304846 0.806762998 0.657638402 0.706342332 1 20.05613261 -11.15264342 2.398195124 1.559158091 0.759339796 0.27626285 0.11673266 9832691.077 2366915.508 29919052.09 0.029561919 7.04E-12 11.15264342 -0.799818295 NYPS(ph)QEELIK ddPTM_HeLa_A486_30min_R1 5 NYPSQEELIK 10 0 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;K7EPC7 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NYPS(1)QEELIK;NYPS(1)QEELIK;NYPS(1)QEELIK;NYPS(1)QEELIK;NYPS(1)QEELIK ;;;; 181.98 2.17E-10 707230000 1857250 1788250 989680 771683 1645630 1961680 2337280 2229690 1520130 2530640 TRUE FALSE FALSE 1727066.366 1646542.557 1372910.601 1796517.023 1439219.741 1719667.867 1752467.823 1722038.261 1651896.092 1896951.272 0.910443189 0.867994124 0.723745845 0.947054913 0.758701481 0.906542984 0.923833864 0.907792565 0.870816302 1 20.85525119 -6.491593161 24.70170094 0.917535562 0.841392888 0.257612044 0.068144256 855.33213 675333.3032 0.023017599 0.020276113 3.22E-07 6.491593161 -0.076142673 NYPS(ph)QEELIKVVDVEEQQLEESGPHDLTETSYLPR ddPTM_HeLa_A485_30min_R1 1 NYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPR 35 1 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;K7EPC7 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NYPS(1)QEELIKVVDVEEQQLEESGPHDLTETSYLPR 129.8 1.66E-06 33206000 8664.3 18304 13492 11812 24208 21613 34571 50687 15070 16148 TRUE FALSE FALSE 10591.64364 20444.49358 18483.25225 12457.25965 21797.76652 22744.62326 27184.62343 38255.93378 18094.41077 12122.60078 0.873710504 1.68647751 1.524693635 1.027606194 1.798109738 1.876216471 2.242474525 3.155752999 1.492617887 1 13.56541163 -6.103301456 2.263184761 2.124311608 1.328110953 0.205990269 0.573519255 0.408316075 4.121632818 0.206547546 0.21119435 7.88E-07 6.103301456 -0.796200655 NYPS(ph)QEELIKVVDVEEQQLEESGPHDLTETSYLPR ddPTM_HeLa_A486_30min_R1 2 NYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPR 35 1 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;K7EPC7 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NYPS(1)QEELIKVVDVEEQQLEESGPHDLTETSYLPR;NYPS(1)QEELIKVVDVEEQQLEESGPHDLTETSYLPR ; 126.03 2.20E-06 53842000 14083.1 13354.5 10823.3 5847.1 27295.8 11557.7 27541 22905 12720.8 18802.2 TRUE FALSE FALSE 13095.94742 12296.24078 15014.37162 13612.3443 23872.10624 10131.82848 20649.9505 17690.03151 13823.44919 14094.00674 0.929185551 0.872444651 1.065301862 0.965825017 1.693777127 0.718874957 1.465158268 1.255145669 0.980803362 1 13.78279419 -5.583236498 24.99998891 1.201820818 0.958673148 0.157345192 0.256262132 122.9385004 50919.66979 0.071910085 0.092835518 2.61E-06 5.583236498 -0.24314767 NYQFDFLRPQHSLFNYFTK ddPTM_HeLa_A485_30min_R1 2 NYQFDFLRPQHSLFNYFTK 19 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 0 ; ; 212.76 5.42E-29 585150000 467270 395410 376910 621030 666640 425630 864890 650970 324347 895240 FALSE FALSE TRUE 571212.5994 441649.7599 516344.6935 654955.2964 600266.9809 447915.3287 680099.186 491318.5868 389440.4678 672073.1437 0.849926239 0.657145378 0.768286456 0.974529785 0.89315722 0.666468126 1.011942216 0.731049279 0.579461434 1 19.35825873 -11.35871783 2.261603628 2.314857839 0.797014032 0.177445018 0.133738712 12685594.45 1275337.319 85579986.55 0.033658278 4.38E-12 11.35871783 -1.517843806 NYQFDFLRPQHSLFNYFTK ddPTM_HeLa_A486_30min_R1 2 NYQFDFLRPQHSLFNYFTK 19 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 0 ; ; 228.01 7.10E-30 650970000 501210 581180 364970 283070 624680 704860 967350 789230 609590 892820 FALSE FALSE TRUE 466077.7673 535125.1802 506296.1582 659001.2656 546326.8095 617901.5397 725308.7984 609539.5578 662429.752 669252.0607 0.696415887 0.799586899 0.756510421 0.984683207 0.816324434 0.923271777 1.083760277 0.910777259 0.98980607 1 19.35219015 -4.566951816 0.445510061 0.998831446 0.546326227 0.666190239 0.068026756 2.417875507 0.456803216 0.051441271 0.564206743 2.71E-05 4.566951816 -0.452505219 NYQQNYQNS(ph)ESGEK ddPTM_HeLa_A485_30min_R1 4 NYQQNYQNSESGEK 14 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(1)ESGEK;NYQQNYQNS(1)ESGEK;NYQQNYQNS(0.999)ES(0.001)GEK;NYQQNYQNS(1)ESGEK ;;; 352.73 4.56E-95 3371130000 2455480 2158770 1033540 3144210 1720860 1656000 2836270 2224130 1212320 3577670 TRUE FALSE FALSE 3001693.055 2411219.373 1415889.455 3315970.231 1549525.136 1742705.599 2230277.744 1678658.63 1455621.504 2685822.711 1.11760655 0.897758204 0.5271716 1.234619924 0.576927557 0.648853549 0.830389041 0.625007236 0.54196485 1 21.35693265 NYQQNYQNS(ph)ESGEK ddPTM_HeLa_A486_30min_R1 4 NYQQNYQNSESGEK 14 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(0.697)ES(0.303)GEK;NYQQNYQNS(0.999)ES(0.001)GEK;NYQQNYQNS(0.974)ES(0.026)GEK;NYQQNYQNS(1)ESGEK ;;; 469.96 1.02E-206 3623860000 3614920 2771970 938030 1291210 1509220 3004750 3644180 2885530 2202680 5507800 TRUE FALSE FALSE 3361532.775 2552309.002 1301260.337 3006002.134 1319919.555 2634054.495 2732367.62 2228557.81 2393610.076 4128611.03 0.814204281 0.618200403 0.315181141 0.728090419 0.319700632 0.638000159 0.661812798 0.539783911 0.579761585 1 21.97722507 -11.6450759 0.624007517 2.084073611 0.570919708 0.409921677 0.151116085 429.9486629 22.99116518 632.9351903 0.057957815 2.26E-12 11.6450759 -1.513153903 NYQQNYQNS(ph)ESGEKNEGS(ph)ESAPEGQAQQR ddPTM_HeLa_A485_30min_R1 2 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NYQQNYQNS(0.994)ES(0.006)GEKNEGS(0.893)ES(0.107)APEGQAQQR;NYQQNY(0.157)QNS(0.649)ES(0.195)GEKNEGS(0.97)ES(0.029)APEGQAQQR ; 154.33 1.43E-09 1704740000 1054700 869030 670120 2015280 1580090 1077020 2046240 1734920 887690 2666290 TRUE FALSE FALSE 1289314.376 970655.4989 918025.274 2125369.643 1422770.692 1133411.102 1609044.108 1309428.15 1065841.241 2001632.972 0.644131264 0.484931809 0.458638165 1.061817862 0.710804983 0.566243221 0.803865709 0.654179946 0.532485853 1 20.93274603 -11.3085109 2.1685629 2.580050559 0.661522887 0.272623654 0.16773732 13341650.23 1711926.519 103346480.5 0.045562698 4.91E-12 11.3085109 -1.918527672 NYQQNYQNS(ph)ESGEKNEGS(ph)ESAPEGQAQQR ddPTM_HeLa_A486_30min_R1 4 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NYQQNYQNS(1)ESGEKNEGS(0.986)ES(0.014)APEGQAQQR;NYQQNY(0.001)QNS(0.995)ES(0.004)GEKNEGS(0.529)ES(0.471)APEGQAQQR;NYQQNYQNS(0.999)ESGEKNEGS(0.635)ES(0.365)APEGQAQQR;NY(0.006)QQNY(0.149)QNS(0.438)ES(0.438)GEKNEGS(0.705)ES(0.263)APEGQAQQR ;;; 293.1 4.62E-92 2444780000 1736342 1517084 719540 1298587 1469618 1931394 2797672 2488100 1378650 3345218 TRUE FALSE FALSE 1614633.392 1396864.739 998165.1579 3023176.163 1285284.807 1693118.245 2097664.875 1921613.945 1498152.492 2507553.639 0.643907818 0.557062755 0.398063332 1.205627715 0.51256523 0.67520719 0.836538386 0.766330145 0.597455811 1 21.25784913 -14 0.079549464 1.898745084 0.411592466 0.170291126 0.208906565 481.9416899 2.711396952 78.38903428 7.397882708 1.00E-14 14 -1.487152618 NYQQNYQNS(ph)ESGEKNEGSESAPEGQAQQR ddPTM_HeLa_A485_30min_R1 3 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(0.983)ES(0.017)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.956)ES(0.044)GEKNEGSESAPEGQAQQR;NY(0.001)QQNY(0.202)QNS(0.654)ES(0.141)GEKNEGS(0.002)ESAPEGQAQQR ;; 392.5 3.17E-188 12147700000 988546 869311 569011 1526735 1401387 865024 1724939 1605249 869588 2079554 TRUE FALSE FALSE 1208444.647 970969.3594 779511.8474 1610136.667 1261859.99 910315.3191 1356391.691 1211559.166 1044106.335 1561159.459 0.774068683 0.621953993 0.499315969 1.031372329 0.808283857 0.583102074 0.868836097 0.776063687 0.668801851 1 20.57418647 -14 0.216283479 2.270217531 0.704249431 0.221791002 0.145596018 244.0922994 2.440288702 135.3316001 0.300601881 1.00E-14 14 -1.5659681 NYQQNYQNS(ph)ESGEKNEGSESAPEGQAQQR ddPTM_HeLa_A486_30min_R1 5 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(0.993)ES(0.007)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.991)ES(0.009)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.929)ES(0.071)GEKNEGSESAPEGQAQQR;NYQQNYQNS(0.712)ES(0.074)GEKNEGS(0.213)ESAPEGQAQQR;NYQQNYQNS(0.782)ES(0.218)GEKNEGSESAPEGQAQQR ;;;; 498.06 0 12580670000 1970943 1728326 868334 1126454 1623254 2087289 2833902 2668002 1499132 3050182 TRUE FALSE FALSE 1832790.074 1591367.153 1204576.18 2622441.84 1419650.347 1829780.505 2124829.746 2060556.187 1629077.969 2286396.574 0.801606377 0.696015368 0.526844815 1.146975931 0.620911684 0.800290084 0.929335606 0.901224315 0.712508927 1 21.12464423 -12.88867358 0.03156737 2.107184321 1.90E-09 0.144918618 0.162990066 2069.397779 5.926196337 291.3673025 132.1321176 1.29E-13 12.88867358 -2.10718432 NYQQNYQNSES(ph)GEKNEGSESAPEGQAQQR ddPTM_HeLa_A485_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNY(0.002)QNS(0.201)ES(0.796)GEKNEGSESAPEGQAQQR 142.23 1.99E-09 3435500000 254200 258740 189380 421060 378940 248260 467000 434980 206820 539440 TRUE FALSE FALSE 310745.913 288997.3923 259439.5428 444061.4416 341211.4031 261258.5097 367221.635 328300.473 248326.8769 404967.5357 0.767335368 0.713631012 0.640642817 1.096535901 0.842564831 0.645134453 0.906792774 0.810683435 0.613201936 1 18.62744673 -11.38113516 2.392441171 2.737060652 0.787222143 0.18199943 0.138330752 6960472.046 1514526.029 65250394.69 0.035855858 4.16E-12 11.38113516 -1.949838509 NYQQNYQNSES(ph)GEKNEGSESAPEGQAQQR ddPTM_HeLa_A486_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(0.183)ES(0.525)GEKNEGS(0.278)ES(0.014)APEGQAQQR 117.52 4.60E-05 448910000 54104 56006 32006 34242 59317 83137 103380 94404 47992 111530 TRUE FALSE FALSE 50311.58899 51567.88059 44399.58035 79717.10649 51876.90875 72880.40222 77513.23056 72910.27002 52151.9852 83602.16206 0.601797702 0.616824725 0.531081724 0.953529245 0.620521138 0.871752601 0.927167775 0.872109862 0.623811441 1 16.35125263 -5.25123471 24.87726851 0.829092816 0.586593704 0.479309541 0.1215944 590.8937347 1440496.522 0.032301033 0.055127009 5.61E-06 5.25123471 -0.242499112 NYQQNYQNSESGEKNEGS(ph)ES(ph)APEGQAQQR ddPTM_HeLa_A485_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NYQQNYQNSES(0.001)GEKNEGS(1)ES(1)APEGQAQQR 135.15 2.40E-06 311300000 111470 89527 66277 206380 155250 98071 217890 185330 85337 277190 TRUE FALSE FALSE 136266.1169 99996.40387 90795.62032 217654.0168 139792.7649 103205.8459 171336.0215 139877.5269 102463.3531 208091.6343 0.654837074 0.48054024 0.436325183 1.045952748 0.671784646 0.495963455 0.823368138 0.672191976 0.49239535 1 17.66685944 -11.25356066 2.338311933 2.388859867 0.645476557 0.271344696 0.176140958 16192871.59 2490472.638 119119469.8 0.044797792 5.58E-12 11.25356066 -1.74338331 NYQQNYQNSESGEKNEGS(ph)ES(ph)APEGQAQQR ddPTM_HeLa_A486_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NYQQNYQNSESGEKNEGS(1)ES(1)APEGQAQQR 169.94 3.74E-14 786430000 301130 234060 118470 220010 258250 308560 521120 456970 232560 597050 TRUE FALSE FALSE 280022.342 215512.2332 164344.7567 512194.3987 225857.8769 270493.0044 390730.2642 352927.9066 252718.488 447544.7939 0.62568562 0.481543381 0.367214096 1.144453931 0.504659824 0.604393143 0.873052864 0.788586777 0.564677528 1 18.77167256 -13.99999585 0.049642521 2.324574212 3.10E-08 0.214454828 0.2087496 898.8996206 3.293944762 159.1827927 35.90362793 1.00E-14 13.99999585 -2.324574181 NYQQNYQNSESGEKNEGS(ph)ESAPEGQAQQR ddPTM_HeLa_A485_30min_R1 4 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNY(0.005)QNS(0.205)ES(0.254)GEKNEGS(0.425)ES(0.111)APEGQAQQR;NYQQNYQNS(0.016)ES(0.016)GEKNEGS(0.968)ESAPEGQAQQR;NYQQNYQNSESGEKNEGS(0.994)ES(0.006)APEGQAQQR;NYQQNYQNSESGEKNEGS(0.587)ES(0.413)APEGQAQQR ;;; 370.23 2.44E-167 17039220000 966673 851244 575332 1709664 1448077 855403 1766935 1673075 808478 2231574 TRUE FALSE FALSE 1181706.074 950789.581 788171.2484 1803058.615 1303901.369 900190.5784 1389414.903 1262750.733 970732.1188 1675283.671 0.705376704 0.567539455 0.470470322 1.076270632 0.778316766 0.53733621 0.829360977 0.753753382 0.579443431 1 20.67597397 -11.61102315 2.159879024 7.199875218 0.703136809 0.225248415 0.166940326 7647512.597 392677.755 233033520.4 0.043707873 2.45E-12 11.61102315 -6.496738409 NYQQNYQNSESGEKNEGS(ph)ESAPEGQAQQR ddPTM_HeLa_A486_30min_R1 2 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNSESGEKNEGS(0.5)ES(0.5)APEGQAQQR;NYQQNY(0.003)QNS(0.002)ES(0.005)GEKNEGS(0.724)ES(0.266)APEGQAQQR ; 332.34 4.60E-127 17608160000 1717091 1486642 652623 934838 1602110 1929916 2847678 2528044 1411210 3074345 TRUE FALSE FALSE 1596731.788 1368835.074 905336.1035 2176350.108 1401158.425 1691822.586 2135158.845 1952463.568 1533534.819 2304509.001 0.69287288 0.593981222 0.392854227 0.944387766 0.608007356 0.734135812 0.926513563 0.847236252 0.665449698 1 21.13602797 -5.916091398 0.743010645 0.853277181 0.579612704 0.311431038 0.149069958 0.915808501 1.119763323 0.093123862 0.135531327 1.21E-06 5.916091398 -0.273664477 NYQQNYQNSESGEKNEGSES(ph)APEGQAQQR ddPTM_HeLa_A485_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(0.001)ESGEKNEGS(0.395)ES(0.604)APEGQAQQR 137.01 7.45E-07 3046600000 218820 180400 130210 368670 336220 211550 395350 387630 164560 483210 TRUE FALSE FALSE 267495.7541 201496.2107 178380.0975 388809.5086 302744.7563 222626.4309 310880.2428 292563.1347 197585.6826 362754.6398 0.737401331 0.555461429 0.491737604 1.071825046 0.8345717 0.613710774 0.856998667 0.806504184 0.544681338 1 18.46863454 -5.224101172 24.99819885 0.804027691 0.590926252 0.292640251 0.158081568 772.6892163 517320.0865 0.042826532 0.074175657 5.97E-06 5.224101172 -0.213101439 NYQQNYQNSESGEKNEGSES(ph)APEGQAQQR ddPTM_HeLa_A486_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNSES(0.084)GEKNEGS(0.4)ES(0.516)APEGQAQQR 97.441 0.00057099 428120000 64869 54457 37957 35488 63820 67127 84566 77538 46588 107090 TRUE FALSE FALSE 60322.01808 50141.62899 52654.96692 82617.85746 55815.1005 58845.55324 63406.69235 59884.29004 50626.28535 80273.96696 0.751451814 0.624631258 0.65594076 1.029198638 0.695307615 0.733058991 0.789878646 0.745998887 0.630668787 1 16.29264457 -11.30653296 2.354540688 2.357354929 0.742424147 0.335531715 0.109880525 5460248.674 922109.5276 39502544.77 0.028643009 4.94E-12 11.30653296 -1.614930782 NYQSQADIPIRS(ph)PFGIVK ddPTM_HeLa_A485_30min_R1 1 NYQSQADIPIRSPFGIVK 18 1 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4 Q14966-3 ZNF638 Zinc finger protein 638 1 0 NYQS(0.011)QADIPIRS(0.989)PFGIVK 89.946 0.00037376 148680000 138690 133880 87572 193070 197100 120330 199960 169280 118770 265680 TRUE FALSE FALSE 169541.112 149536.1014 119968.527 203616.9252 177476.0319 126630.2927 157236.9125 127763.8146 142606.0496 199450.8655 0.85003949 0.749739045 0.601494141 1.020887649 0.889823323 0.634894677 0.788349111 0.64057789 0.714993386 1 17.60567386 -6.248899907 24.45689652 0.735335754 0.817115089 0.044340595 0.138298428 1698.211079 3312179.481 0.04599259 0.045667545 5.64E-07 6.248899907 0.081779335 NYS(ph)SPPPCHLSR ddPTM_HeLa_A485_30min_R1 4 NYSSPPPCHLSR 12 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 NY(0.001)S(0.689)S(0.31)PPPCHLSR;NY(0.008)S(0.607)S(0.385)PPPCHLSR;NY(0.001)S(0.57)S(0.429)PPPCHLSR;NYS(0.5)S(0.5)PPPCHLSR ;;; 68.576 0.0096089 2134460000 1136240 1869420 1903020 982870 2601240 1360000 1936820 1878720 1521400 1632400 TRUE FALSE FALSE 1388992.668 2088032.407 2607026.289 1036561.699 2342251.412 1431207.497 1523002.585 1417960.974 1826731.025 1225472.722 1.133434178 1.703858739 2.127363786 0.845846407 1.911304405 1.16788197 1.24278783 1.157072653 1.490633771 1 20.22490694 -6.327026376 24.999928 1.223436488 1.546808499 0.176687803 0.358605119 369.055872 140672.3305 0.122944644 0.108426997 4.71E-07 6.327026376 0.323372011 NYS(ph)SPPPCHLSR ddPTM_HeLa_A486_30min_R1 3 NYSSPPPCHLSR 12 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 NY(0.002)S(0.612)S(0.387)PPPCHLSR;NY(0.001)S(0.499)S(0.499)PPPCHLSR;NYS(0.5)S(0.5)PPPCHLSR ;; 70.451 0.0087774 1523030000 1400020 1466700 1262150 214405 1695790 1041480 1271920 1264950 1379840 775350 TRUE FALSE FALSE 1301885.828 1350473.35 1750888.282 499145.6754 1483088.206 912992.7866 953672.163 976948.4987 1499445.642 581197.3133 2.240006617 2.323605632 3.012553984 0.858823095 2.551780904 1.570882669 1.640875037 1.680923976 2.579925282 1 19.14866851 -5.24159899 24.99880946 1.753920553 2.505210358 0.313430775 0.556846742 1060.175397 1335814.981 0.143304976 0.247786159 5.73E-06 5.24159899 0.751289806 NYSEVIEVDES(ph)DVEEDIFPTTSK ddPTM_HeLa_A485_30min_R1 2 NYSEVIEVDESDVEEDIFPTTSK 23 0 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 0 NYSEVIEVDES(1)DVEEDIFPTTSK;NYSEVIEVDES(1)DVEEDIFPTTSK ; 131.43 1.69E-06 130661000 162721.2 161630.2 117242.9 192159.3 223666.3 171078.5 268547 261747 139050.3 288524 TRUE FALSE FALSE 198917.9696 180531.4459 160615.9276 202656.476 201397.2978 180035.9057 211169.7396 197553.1378 166956.4198 216600.2767 0.918364337 0.833477448 0.741531498 0.935624271 0.929810898 0.831189639 0.9749283 0.912063183 0.770804277 1 17.72467556 -5.299897656 24.99922231 0.904635574 0.831359583 0.18338461 0.073914301 935.2774273 607961.1042 0.020610731 0.030571463 5.01E-06 5.299897656 -0.073275991 NYSEVIEVDES(ph)DVEEDIFPTTSK ddPTM_HeLa_A486_30min_R1 2 NYSEVIEVDESDVEEDIFPTTSK 23 0 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 0 NYSEVIEVDES(1)DVEEDIFPTTSK;NYSEVIEVDES(1)DVEEDIFPTTSK ; 121.33 2.08E-05 124696000 335170 304470 176594 189501 297720 346150 407930 367480 250800 404430 TRUE FALSE FALSE 311676.3138 280342.6883 244975.9262 441167.9049 260377.1815 303445.5324 305861.5994 283812.826 272539.5459 303158.0956 1.028098271 0.924740894 0.808079777 1.455240389 0.858882495 1.000948142 1.008917802 0.936187521 0.899001379 1 18.20971082 -7.254012186 7.950417955 0.938082172 1.011699199 0.032725557 0.165789091 0.554586771 321.8433054 0.082651863 0.044520871 5.57E-08 7.254012186 0.073617027 NYSVGSRPLKPLS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 NYSVGSRPLKPLSPLR 16 2 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 NYSVGSRPLKPLS(1)PLR;NYSVGSRPLKPLS(1)PLR ; 122.35 2.40E-05 3802300000 1679690 1582860 1190850 2657300 2445700 1653060 3164700 2233200 1218520 3850800 TRUE FALSE FALSE 2053331.246 1767961.708 1631394.97 2802461.57 2202197.521 1739611.665 2488535.992 1685504.198 1463065.787 2890866.429 0.710282296 0.611568106 0.564327343 0.969419252 0.76177768 0.601761343 0.86082704 0.583044648 0.506099408 1 21.46307052 NYSVGSRPLKPLS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 NYSVGSRPLKPLSPLR 16 2 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 NYSVGSRPLKPLS(1)PLR;NYSVGS(0.008)RPLKPLS(0.992)PLR ; 146.72 4.95E-08 4312900000 4308100 3205500 1609250 1835840 3207000 3675500 5533100 4716000 2875640 6282900 TRUE FALSE FALSE 4006124.437 2951484.506 2232394.697 4273928.298 2804748.156 3222054.18 4148659.857 3642269.75 3124902.791 4709620.945 0.850625663 0.626692581 0.474007298 0.907488808 0.595535859 0.684142995 0.880890395 0.773367919 0.663514713 1 22.16717952 -14 0.191980306 2.249966528 0.663914027 0.295824932 0.130532704 171.5876142 1.682389363 81.86230207 0.346530896 1.00E-14 14 -1.5860525 NYVPSYDPSSPQTS(ph)QSWYLG ddPTM_HeLa_A485_30min_R1 1 NYVPSYDPSSPQTSQSWYLG 20 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31 A0A1B0GW37 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 NYVPSYDPS(0.151)S(0.113)PQT(0.151)S(0.205)QS(0.205)WY(0.176)LG 57.804 0.023429 43424000 32210 47602 33746 39024 60850 33840 58770 53025 32843 66619 TRUE FALSE FALSE 39375.00338 53168.63982 46230.04969 41155.78231 54791.56034 35611.81007 46213.30939 40020.53561 39434.28885 50012.10933 0.787309392 1.063115324 0.924377122 0.822916347 1.095565875 0.712063749 0.924042397 0.80021691 0.788494814 1 15.60998983 -6.272801251 24.98643379 0.837419572 0.938347838 0.142783376 0.114036985 1372.789863 3018959.367 0.037737633 0.033562653 5.34E-07 6.272801251 0.100928266 NYYEQWGK ddPTM_HeLa_A485_30min_R1 1 NYYEQWGK 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 120.07 0.033809 150590000 77576 108190 118970 91016 127330 98071 118010 124610 84534 122910 FALSE FALSE TRUE 94832.51357 120841.8794 162981.9538 95987.97362 114652.5781 103205.8459 92796.19945 94049.20212 101499.1984 92270.79899 1.027763004 1.309643795 1.7663438 1.040285493 1.242566222 1.118510374 1.005694114 1.019273737 1.1000143 1 16.49358653 -5.9539449 1.408976204 1.040681912 1.338568895 0.281369478 0.190147518 0.536392954 2.202530577 0.079944748 0.093417311 1.11E-06 5.9539449 0.297886983 PAAS(ph)PRPR ddPTM_HeLa_A485_30min_R1 3 PAASPRPR 8 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 PAAS(1)PRPR;PAAS(1)PRPR;PAAS(1)PRPR ;; 99.788 0.0011042 203930000 209764 150428 136721 379500 161396 161136 214451 174074 205075 498590 TRUE FALSE FALSE 256425.2781 168019.2461 187299.7873 400231.1241 145326.8475 169572.8318 168631.7919 131382.0786 246231.6714 374300.6889 0.685078296 0.448888423 0.500399259 1.069277017 0.388262303 0.453039059 0.450524931 0.351006777 0.657844559 1 18.51383818 -8.020125015 23.45566898 1.000000012 0.542458441 0.329164592 0.196285594 800.7851079 933314.4394 0.194297835 0.050167485 9.55E-09 8.020125015 -0.457541571 PAAS(ph)PRPR ddPTM_HeLa_A486_30min_R1 3 PAASPRPR 8 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;E9PSG1;F8W7E0 P20810-6 CAST Calpastatin 1 0 PAAS(1)PRPR;PAAS(1)PRPR;PAAS(1)PRPR ;; 108.57 0.00062695 264646000 351095 269431 271817 150994 277840 501496 404369 323013 396779 485451 TRUE FALSE FALSE 326485.0536 248080.3063 377071.8219 351521.6628 242990.7164 439626.5224 303191.5992 249469.9912 431172.1232 363890.9098 0.897205851 0.68174362 1.036222153 0.966008365 0.667757039 1.208127245 0.833193661 0.685562581 1.184893911 1 18.47314649 -1.000000014 0.09682678 1.060479599 0.414481116 0.062483433 0.183321153 475.3141729 3.284022585 2.606269759 40.76749622 0.099999997 1.000000014 -0.645998483 PAGRRT(ph)DLK ddPTM_HeLa_A486_30min_R1 1 PAGRRTDLK 9 2 O00750;F5GWN5;Q5SW98 O00750 PIK3C2B Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta 1 0 PAGRRT(1)DLK 53.327 0.027986 261900000 502650 1156000 548870 752950 1118900 1645500 2025300 1763000 923260 1345500 TRUE FALSE FALSE 467416.8307 1064394.35 761407.1632 1752905.652 978557.1287 1442494.94 1518548.519 1361603.386 1003288.92 1008578.042 0.463441411 1.055341585 0.75493133 1.73799704 0.970234417 1.430226398 1.505633134 1.350022833 0.994755862 1 19.94389129 -4.181121901 1.00648848 1.290224759 9.06E-07 0.421579469 0.274262165 2.005165204 1.478079089 0.086310284 2.904774632 6.59E-05 4.181121901 -1.290223853 PAPPPQS(ph)QSPEVEQLGR ddPTM_HeLa_A486_30min_R1 1 PAPPPQSQSPEVEQLGR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 PAPPPQS(0.615)QS(0.385)PEVEQLGR 98.439 0.00051271 230490000 37598 51300 30446 9204.1 42296 44719 47616 45017 35732 46629 TRUE FALSE FALSE 34962.57436 47234.80117 42235.50657 21427.60995 36990.84129 39202.02445 35701.97317 34767.61181 38829.27853 34952.7949 1.000279791 1.351388389 1.208358493 0.61304425 1.058308539 1.121570523 1.021434002 0.994701909 1.110906256 1 15.0931202 PAPPPQSQS(ph)PEVEQLGR ddPTM_HeLa_A485_30min_R1 1 PAPPPQSQSPEVEQLGR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 PAPPPQS(0.158)QS(0.842)PEVEQLGR 68.173 0.0086793 67715000 34324 17515 18118 50100 33777 25131 32533 35371 21718 62461 TRUE FALSE FALSE 41959.25538 19563.22689 24820.60215 52836.83614 30414.04328 26446.8203 25582.05878 26696.20679 26076.60339 46890.62221 0.894832557 0.417209795 0.529329768 1.126810301 0.648616756 0.564010863 0.545568764 0.569329336 0.556115534 1 15.5170118 -11.048874 2.512707391 1.469998105 0.645774899 0.219984428 0.197444596 56461314.71 21667535.26 152389415.2 0.051460739 8.94E-12 11.048874 -0.824223206 PAPPPQSQS(ph)PEVEQLGR ddPTM_HeLa_A486_30min_R1 1 PAPPPQSQSPEVEQLGR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 PAPPPQS(0.02)QS(0.98)PEVEQLGR 159.95 1.26E-09 0 17708 22244 10960 8951.5 23719 21727 28772 23474 18119 22280 TRUE FALSE FALSE 16466.76064 20481.30443 15204.00552 20839.54438 20743.94185 19046.54364 21572.94128 18129.48263 19689.56951 16700.94298 0.985977897 1.226356168 0.910368087 1.247806451 1.242082071 1.140447199 1.291719953 1.085536467 1.178949568 1 14.02764194 -4.243631965 23.11927581 1.152742437 0.985977498 0.151413675 0.11365856 2411.063816 3130130.788 0.027380307 0.739426893 5.71E-05 4.243631965 -0.166764938 PAS(ph)PDRFAVSAEAENK ddPTM_HeLa_A486_30min_R1 1 PASPDRFAVSAEAENK 16 1 G3V331;O15037 G3V331 KHNYN Protein KHNYN 1 0 PAS(1)PDRFAVSAEAENK 134.32 4.92E-06 134880000 248670 267840 118140 162030 201580 348650 403060 324840 202420 505340 TRUE FALSE FALSE 231239.5171 246615.3829 163886.9719 377214.0285 176295.9567 305637.1078 302210.1249 250881.0232 219965.9286 378799.5748 0.610453476 0.651044508 0.432648247 0.995814287 0.465406955 0.806857051 0.797810095 0.662305451 0.580692121 1 18.53107519 -14 0.266271327 3.159850251 0.647544926 0.277508438 0.159262793 273.2805472 2.670891911 324.6270989 0.195962434 1.00E-14 14 -2.512305325 PAS(ph)PSLQLLPWR ddPTM_HeLa_A485_30min_R1 3 PASPSLQLLPWR 12 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 PAS(0.974)PS(0.026)LQLLPWR;PAS(0.964)PS(0.036)LQLLPWR;PAS(0.996)PS(0.004)LQLLPWR ;; 214.42 3.33E-18 734626000 383641 227652 217496 487314 335352 262518 334813 250895 263424 653114 TRUE FALSE FALSE 468980.6169 254273.9211 297956.8212 513934.7299 301963.1774 276263.0366 263277.4674 189362.6079 316290.7805 490304.6995 0.956508509 0.518603883 0.607697257 1.048194583 0.615868413 0.563451741 0.536967049 0.38621414 0.645090249 1 18.90331906 -4.24650982 23.93448354 0.641395477 0.956508918 0.165065011 0.198257257 2727.733319 4372865.165 0.050211811 1.061755698 5.67E-05 4.24650982 0.315113441 PAS(ph)PSLQLLPWR ddPTM_HeLa_A486_30min_R1 2 PASPSLQLLPWR 12 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 PAS(0.985)PS(0.015)LQLLPWR;PAS(0.988)PS(0.012)LQLLPWR ; 225.13 7.55E-31 653300000 255495 250042 170410 108447 237893 300195 314824 310194 198612 389900 TRUE FALSE FALSE 237586.1199 230227.7613 236397.3157 252470.0966 208054.2417 263159.9931 236051.7053 239569.5977 215827.8481 292266.5022 0.812909171 0.787732291 0.808841636 0.863835215 0.711864822 0.900411067 0.807659118 0.819695709 0.738462487 1 18.15692496 -11.08930111 2.592474191 1.328123962 0.807478659 0.563557567 0.051272106 10115044.77 2892378.671 19636873.85 0.01229424 8.14E-12 11.08930111 -0.520645303 PASHSHAHQHSPIS(ph)PR ddPTM_HeLa_A486_30min_R1 1 PASHSHAHQHSPISPR 16 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C1J7;H7C0P3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 PASHSHAHQHS(0.001)PIS(0.998)PR 53.779 0.015069 25845000 11146 11671 10793 1063.7 11438 11576 7549 7232.8 10105 4095.4 TRUE FALSE FALSE 10364.72296 10746.14745 14972.33865 2476.347356 10003.33938 10147.87082 5660.160355 5586.049331 10980.90954 3069.885183 3.376257527 3.500504681 4.877165676 0.806657972 3.258538606 3.305619008 1.843769397 1.819628096 3.576977274 1 11.58396898 -1.302902745 0.081203127 7.12E-11 9.740999017 0.272167282 1.053732977 247.1121922 1.552026611 29.16964185 270.6776085 0.049784856 1.302902745 9.740999017 PAT(ph)PGASSVEQLRK ddPTM_HeLa_A485_30min_R1 2 PATPGASSVEQLRK 14 1 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 PAT(0.671)PGAS(0.25)S(0.079)VEQLRK;PAT(0.934)PGAS(0.051)S(0.014)VEQLRK ; 107.51 0.00028318 2879800000 1938710 1140410 866540 3616800 1599620 1473580 2362430 1764070 1270550 4359600 TRUE FALSE FALSE 2369969.351 1273771.029 1187109.206 3814376.626 1440356.216 1550734.37 1857677.531 1331429.067 1525537.731 3272831.952 0.72413414 0.389195366 0.362716211 1.165466691 0.440094767 0.473820347 0.567605535 0.406812536 0.46612162 1 21.6421081 -10.37154452 5.154584495 1.000257697 0.552753326 0.256724413 0.22706851 0.000675503 8.24E-05 0.220850065 0.05353367 4.25E-11 10.37154452 -0.447504371 PAT(ph)PHLLHHR ddPTM_HeLa_A486_30min_R1 1 PATPHLLHHR 10 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 PAT(1)PHLLHHR 128.28 0.00017986 162460000 103190 99703 59860 57957 87070 115400 135150 118920 85644 166260 TRUE FALSE FALSE 95956.91387 91802.17117 83039.39511 134926.825 76148.8687 101163.1213 101334.0405 91844.51201 93067.69088 124627.4138 0.769950294 0.736612984 0.666301198 1.082641618 0.611012187 0.811724469 0.813095911 0.736952723 0.746767409 1 16.92726192 -10.10461521 4.402069343 1.000024729 0.775985808 0.24561957 0.118280662 153248269.4 82037.12906 39806.03298 0.027333806 7.86E-11 10.10461521 -0.224038921 PCGPGWS(ph)AASR ddPTM_HeLa_A485_30min_R1 1 PCGPGWSAASR 11 0 K7ERK5 K7ERK5 TMED1 1 0 PCGPGWS(1)AASR 64.82 0.020396 1723300000 34755 59262 82540 52045 82272 51940 50656 68562 57520 73333 TRUE FALSE FALSE 42486.12985 66192.17539 113074.9808 54888.08657 74080.71081 54659.49809 39832.93178 51747.062 69063.7364 55052.43269 0.771739372 1.202347874 2.053950666 0.997014734 1.345639188 0.992862539 0.723545352 0.939959589 1.254508348 1 15.7485187 -6.29687062 6.615273977 0.960692083 1.298173165 0.159602814 0.33103423 0.37797532 52.68438828 0.120303667 0.107450345 5.05E-07 6.29687062 0.337481082 PCGPGWS(ph)AASR ddPTM_HeLa_A486_30min_R1 3 PCGPGWSAASR 11 0 K7ERK5 K7ERK5 TMED1 1 0 PCGPGWS(1)AASR;PCGPGWS(1)AASR;PCGPGWS(1)AASR ;; 57.174 0.035575 6681100000 157120 190987 169245 69342 220933 166639 174849 209881 164638 129037 TRUE FALSE FALSE 146106.6994 175852.4946 234781.1965 161431.6804 193221.523 146080.7744 131099.9308 162095.678 178908.9544 96725.29531 1.510532471 1.818061077 2.427298834 1.668970664 1.997631772 1.510264445 1.355384136 1.675835441 1.849660462 1 16.56160561 -6.270750562 23.70634449 1.512790763 1.89898972 0.30437559 0.304466814 456.8448513 1163126.05 0.106475743 0.095289206 5.36E-07 6.270750562 0.386198957 PCIQAQYGTPAPS(ph)PGPR ddPTM_HeLa_A485_30min_R1 1 PCIQAQYGTPAPSPGPR 17 0 F8VVX9;P22736-3;P22736 F8VVX9 NR4A1 Nuclear receptor subfamily 4 group A member 1 1 0 PCIQAQYGT(0.001)PAPS(0.999)PGPR 218.28 4.62E-34 119370000 64009 72043 61136 102630 87448 90503 100080 124010 76277 126510 TRUE FALSE FALSE 78247.58122 80467.80216 83752.75048 108236.417 78741.37007 95241.59714 78697.09042 93596.35306 91585.09425 94973.38524 0.823889567 0.847266863 0.881854956 1.139649985 0.829088801 1.002824074 0.828622569 0.985500862 0.964323784 1 16.53523566 -5.011779668 24.81568878 0.958368132 0.84282384 0.282255348 0.084421331 667.8347824 1406906.574 0.021728539 0.040582134 9.73E-06 5.011779668 -0.115544292 PCIQAQYGTPAPS(ph)PGPR ddPTM_HeLa_A486_30min_R1 2 PCIQAQYGTPAPSPGPR 17 0 F8VVX9;P22736-3;P22736 F8VVX9 NR4A1 Nuclear receptor subfamily 4 group A member 1 1 0 PCIQAQYGTPAPS(1)PGPR;PCIQAQYGT(0.001)PAPS(0.999)PGPR ; 223.76 3.00E-34 256610000 115280 109710 69368 40531 105520 105880 114410 111480 89487 184420 TRUE FALSE FALSE 107199.4673 101016.18 96229.14734 94358.21632 92284.69767 92817.60211 85783.40789 86098.43759 97243.80521 138240.0316 0.775458932 0.730730302 0.69610189 0.68256796 0.667568551 0.671423473 0.620539556 0.622818416 0.703441717 1 17.07681593 -8.049048414 22.91547097 1 0.681150597 0.825011109 0.043512285 2289.683959 1069741.01 0.046666354 0.012049201 8.93E-09 8.049048414 -0.318849404 PCSEETPAIS(ph)PSK ddPTM_HeLa_A485_30min_R1 7 PCSEETPAISPSK 13 0 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEETPAIS(1)PSK;PCSEETPAIS(1)PSK;PCSEETPAIS(0.999)PS(0.001)K;PCSEETPAIS(1)PSK;PCSEETPAIS(1)PSK;PCSEETPAIS(0.998)PS(0.002)K;PCSEETPAIS(1)PSK ;;;;;; 339.61 2.76E-81 9602590000 5655730 3386340 2342110 11170780 4677560 4376470 8006260 6565240 3549080 13652960 TRUE FALSE FALSE 6913827.626 3782343.006 3208553.952 11781011.43 4211845.702 4605615.202 6295657.146 4955104.596 4261347.802 10249528.34 0.674550809 0.369026055 0.313044059 1.14941986 0.410930685 0.44934899 0.614238718 0.483447085 0.415760381 1 23.28905419 -11.16654022 2.298115788 2.105682386 0.542022216 0.266479849 0.227863129 11928131.04 2539256.856 68722679.23 0.056411759 6.81E-12 11.16654022 -1.56366017 PCSEETPAIS(ph)PSK ddPTM_HeLa_A486_30min_R1 6 PCSEETPAISPSK 13 0 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEETPAIS(0.994)PS(0.006)K;PCSEETPAIS(0.999)PS(0.001)K;PCSEETPAIS(0.999)PS(0.001)K;PCSEETPAIS(0.997)PS(0.003)K;PCSEETPAIS(1)PSK;PCSEETPAIS(1)PSK ;;;;; 307.01 1.13E-67 9736990000 4462180 4299620 1621374 2689810 3323590 5730690 7238770 6236470 3380240 9316960 TRUE FALSE FALSE 4149404.225 3958902.452 2249213.435 6262013.615 2906714.351 5023695.733 5427553.182 4816561.922 3673241.925 6983932.573 0.59413578 0.56685863 0.322055434 0.896631454 0.416200231 0.719321912 0.777148566 0.689663291 0.525956098 1 22.7356082 -14 0.144357783 2.317022496 0.487985663 0.355600881 0.159238405 150.594048 1.312695049 57.19424114 0.877591339 1.00E-14 14 -1.829036832 PCSEETPAIS(ph)PSKR ddPTM_HeLa_A485_30min_R1 9 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEETPAIS(0.803)PS(0.197)KR;PCSEETPAIS(0.997)PS(0.003)KR;PCSEET(0.001)PAIS(0.999)PSKR;PCSEETPAIS(0.986)PS(0.014)KR;PCSEETPAIS(1)PSKR;PCSEETPAIS(0.963)PS(0.037)KR;PCSEETPAIS(0.854)PS(0.146)KR;PCSEETPAIS(0.942)PS(0.058)KR;PCSEETPAIS(0.972)PS(0.028)KR ;;;;;;;; 273.07 2.09E-48 1.61E+11 9336490 6238360 4162720 16859340 8845850 8873900 15379840 15123730 6572260 21184390 TRUE FALSE FALSE 11413359.99 6967881.935 5702683.353 17780323.05 7965126.114 9338523.682 12093811.54 11414611.5 7891252.298 15903511.44 0.71766289 0.438134808 0.35858014 1.118012404 0.50084072 0.587198853 0.760449136 0.717741585 0.496195593 1 23.92284201 -14 0.316632229 4.348393309 0.618726358 0.217957262 0.205265421 503.119224 4.505537327 1127.843276 0.188746906 1.00E-14 14 -3.729666951 PCSEETPAIS(ph)PSKR ddPTM_HeLa_A486_30min_R1 11 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEETPAIS(0.98)PS(0.02)KR;PCSEET(0.001)PAIS(0.996)PS(0.003)KR;PCSEETPAIS(0.996)PS(0.004)KR;PCSEETPAIS(0.5)PS(0.5)KR;PCSEET(0.205)PAIS(0.795)PSKR;PCSEETPAIS(0.999)PS(0.001)KR;PCSEETPAIS(0.997)PS(0.003)KR;PCSEETPAIS(1)PSKR;PCSEETPAIS(0.888)PS(0.112)KR;PCSEETPAIS(0.976)PS(0.024)KR;PCSEETPAIS(0.956)PS(0.044)KR ;;;;;;;;;; 246.77 3.42E-35 1.57E+11 10802950 9576610 3892240 6836010 8319400 12655490 17418090 15257250 7103480 21479600 TRUE FALSE FALSE 10045718.99 8817724.546 5399419.566 15914576.75 7275903.277 11094184.32 13059899.65 11783507.24 7719215.366 16100968.35 0.623920175 0.547651815 0.335347505 0.988423578 0.451892279 0.689038328 0.811125105 0.731850842 0.479425535 1 23.94064412 -14 0.153072978 2.264783022 0.528921609 0.269302434 0.180767525 182.3024612 1.639089975 70.71640801 0.855045712 1.00E-14 14 -1.735861413 PDINS(ph)RDRSGPR ddPTM_HeLa_A485_30min_R1 1 PDINSRDRSGPR 12 2 A0A2R8Y731 A0A2R8Y731 1 0 PDINS(0.99)RDRS(0.01)GPR 42.041 0.03354 69228000 32985 43089 35258 27698 45777 38890 33934 41429 36066 41767 TRUE FALSE FALSE 40322.39945 48127.88373 48301.40141 29211.0716 41219.28115 40926.22026 26683.72368 31268.47279 43304.11538 31355.25556 1.285985355 1.534922387 1.540456314 0.931616441 1.314589226 1.305242758 0.851012795 0.997232273 1.381079969 1 14.93641966 -5.250289054 24.97963085 1.117099892 1.461901474 0.434334117 0.17883562 702.7027217 1574234.333 0.049542216 0.084816092 5.62E-06 5.250289054 0.344801583 PDINS(ph)RDRSGPR ddPTM_HeLa_A486_30min_R1 1 PDINSRDRSGPR 12 2 A0A2R8Y731 A0A2R8Y731 1 0 PDINS(0.99)RDRS(0.01)GPR 42.041 0.03354 92596000 33289 34081 23535 11580 34849 30136 27424 27612 26107 36786 TRUE FALSE FALSE 30955.613 31380.29744 32648.38229 26958.82522 30477.91347 26418.12672 20562.22514 21325.35037 28369.97578 27574.54616 1.122615503 1.138016824 1.184004338 0.977670677 1.105291572 0.958062068 0.745695868 0.773370856 1.028846517 1 14.75104952 -6.400135369 3.458863366 0.866236299 1.105185868 0.532548399 0.096214293 0.186489914 4.105879279 0.036621865 0.031495519 3.98E-07 6.400135369 0.238949568 PDMGY(ph)NT(ph)LANFRIEK ddPTM_HeLa_A485_30min_R1 1 PDMGYNTLANFRIEK 15 1 F5H3U7;F8WAG2;Q8TDX7-2;Q8TDX7 F5H3U7 NEK7 Serine/threonine-protein kinase Nek7 2 0 PDMGY(1)NT(1)LANFRIEK 79.805 0.0018739 6242000000 1978400 2926900 2692000 755910 3287100 2946600 2462200 3204900 2718700 965180 TRUE FALSE FALSE 2418488.255 3269175.494 3687882.823 797203.4492 2959824.782 3100879.42 1936130.856 2418893.25 3264318.153 724578.3888 3.337786901 4.511831356 5.089694753 1.100230785 4.084892439 4.279563768 2.67207922 3.33834584 4.505127676 1 19.46678225 -10.49806691 3.13119003 0.929168353 3.6422146 0.350309818 1.085637398 120288828 139671063 72873809.91 0.27686796 3.18E-11 10.49806691 2.713046247 PEEYS(ph)R ddPTM_HeLa_A486_30min_R1 1 PEEYSR 6 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;P78352-3;P78352;P78352-2;B9EGL1;Q92796;A0A3B3ISR0;B7Z3U2;Q5JUW8;B7Z647;A0A3B3IU19;A0A3B3IS17;A0A3B3ISQ5;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18;Q92796-2 A0A590UJD9;A0A590UJ08;A0A590UJ18;Q92796-2 DLG1;DLG4;DLG3 Disks large homolog 1;Disks large homolog 4;Disks large homolog 3 1 0 PEEY(0.017)S(0.983)R 64.757 0.034724 3607900000 0 65314 194420 0 166330 32614 44260 65489 104090 42675 TRUE FALSE FALSE 0 60138.28077 269704.6307 0 145467.3404 28590.41627 33185.67987 50578.58431 113112.605 31988.90223 0 1.879973259 8.431193693 0 4.547431462 0.893760469 1.037412276 1.581129104 3.535995208 1 14.96528386 -6.282890497 24.6424869 1.610214614 3.049275961 0.075908188 2.368463547 1938.682501 2227100.168 0.834733239 0.736862831 5.21E-07 6.282890497 1.439061347 PEGPFIT(ph)YNY(ph)YVT(ph)YDFVK ddPTM_HeLa_A485_30min_R1 1 PEGPFITYNYYVTYDFVK 18 0 Q8N309-2;Q8N309-3;Q8N309 Q8N309-2 LRRC43 Leucine-rich repeat-containing protein 43 3 0 PEGPFIT(0.509)Y(0.483)NY(0.496)Y(0.496)VT(0.521)Y(0.496)DFVK 42.277 0.03114 982700000 271200 299130 236340 371270 395020 296620 414350 401090 243470 514550 TRUE FALSE FALSE 331527.5044 334110.6514 323772.0009 391551.54 355690.4218 312150.5645 325820.7376 302722.0486 292332.1958 386282.1546 0.858252188 0.864939391 0.838174886 1.013641286 0.920804696 0.808089529 0.843478617 0.783681164 0.756784108 1 18.5592955 -6.263042845 24.9792746 0.825203751 0.90023294 0.126373549 0.075980156 253.347128 3946701.059 0.026013446 0.024148318 5.46E-07 6.263042845 0.075029189 PEK(ac)RPFER ddPTM_HeLa_A485_30min_R1 1 PEKRPFER 8 2 P55786-2 P55786-2 NPEPPS Puromycin-sensitive aminopeptidase 0 1 PEK(1)RPFER 79.974 0.033285 0 30273 30803 28658 42092 36844 35264 47577 42973 28081 58052 FALSE TRUE FALSE 37007.12441 34405.1429 39259.78676 44391.37938 33175.68199 37110.36851 37411.78528 32433.80437 33716.59913 43580.70477 0.849163055 0.789458158 0.900852498 1.018601687 0.761247028 0.851532088 0.858448377 0.744223953 0.773658877 1 15.41140191 PEK(ac)RPFER ddPTM_HeLa_A486_30min_R1 1 PEKRPFER 8 2 P55786-2 P55786-2 NPEPPS Puromycin-sensitive aminopeptidase 0 1 PEK(1)RPFER 87.913 0.02074 0 33472 34315 23220 16038 38980 38748 40047 43036 28573 54041 FALSE TRUE FALSE 31125.78565 31595.75443 32211.40585 37337.27452 34090.76493 33967.66572 30026.81703 33237.64227 31049.73065 40508.78185 0.768371307 0.779972959 0.795170933 0.921708153 0.841564801 0.838525973 0.741242162 0.82050461 0.766493813 1 15.30594708 -11.25452014 2.369874199 1.759763626 0.810569227 0.580497382 0.048883195 4048129.608 597835.0698 16587703.81 0.013001059 5.57E-12 11.25452014 -0.9491944 PELAK(ac)SAPAPK ddPTM_HeLa_A486_30min_R1 2 PELAKSAPAPK 11 1 Q99880 Q99880 HIST1H2BL Histone H2B type 1-L 0 1 ; PELAK(1)SAPAPK;PELAK(1)SAPAPK 180.97 1.97E-08 110256000 255140 267870 133983 161759 291510 377360 425310 405570 242950 546220 FALSE TRUE FALSE 237256.0035 246643.0056 185864.8058 376583.1268 254946.0976 330805.1599 318892.9395 313230.5645 264009.1016 409442.9567 0.579460459 0.602386734 0.453945544 0.919745036 0.62266573 0.807939554 0.77884583 0.76501637 0.644800692 1 18.64330295 -6.735253347 0.065550807 1.46500404 4.62E-15 0.449845451 0.117500744 35.44916869 1.398569176 13.62738087 16.75831252 1.84E-07 6.735253347 -1.46500404 PEPAK(ac)SAPAPK ddPTM_HeLa_A485_30min_R1 2 PEPAKSAPAPK 11 1 P62807;O60814;P57053;Q16778;P06899 P62807;Q16778 HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BJ Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; PEPAK(1)SAPAPK;PEPAK(1)SAPAPK 184.24 1.44E-08 4498700000 667710 549580 401210 1436000 1187140 2260300 5097100 7543800 3873600 11721200 FALSE TRUE FALSE 816239.7859 613848.6003 549634.2747 1514445.044 1068944.173 2378645.813 4008062.946 5693671.222 4650995.989 8799320.553 0.092761683 0.069760909 0.062463263 0.172109316 0.121480308 0.270321532 0.455496867 0.647058053 0.528563082 1 23.0689607 -7.399899014 0.483193716 0.99557976 0.030100331 0.950736146 0.065494141 0.175693583 0.101389122 0.070234536 0.04637269 3.98E-08 7.399899014 -0.965479429 down PEPAK(ac)SAPAPK ddPTM_HeLa_A486_30min_R1 2 PEPAKSAPAPK 11 1 P62807;O60814;P57053;Q16778;P06899 P62807;Q16778 HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BJ Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; PEPAK(1)SAPAPK;PEPAK(1)SAPAPK 184.24 1.44E-08 10350000000 6263300 6742400 3206700 4166300 7230900 8604200 10993200 10382100 5849100 13157900 FALSE TRUE FALSE 5824275.014 6208107.669 4448420.118 9699356.953 6323933.097 7542701.285 8242585.086 8018322.47 6356104.697 9863076.196 0.59051303 0.62942915 0.451017515 0.983400793 0.641172487 0.764741257 0.835701248 0.812963655 0.644434309 1 23.23360625 -3.628869213 0.094906553 1.142129136 4.63E-17 0.373999026 0.132086685 86.08850689 1.086060788 2.759239042 13.63038974 0.000235034 3.628869213 -1.142129136 PEPAK(ac)SAPAPK(ac)K ddPTM_HeLa_A486_30min_R1 1 PEPAKSAPAPKK 12 2 P62807;O60814;P57053;Q16778;P06899 P62807;Q16778 HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BJ Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J 0 2 PEPAK(1)SAPAPK(1)K 112.13 0.00022492 0 6502.3 14955 9540.5 7732.5 19264 20312 19965 21156 15446 22324 FALSE TRUE FALSE 6046.522348 13769.91133 13234.8371 18001.65078 16847.72949 17806.11196 14969.54583 16339.24063 16784.87172 16733.9251 0.361333179 0.822873967 0.790898551 1.07575782 1.006800819 1.064072646 0.894562737 0.976414113 1.003044511 1 14.03048826 -4.1485063 1.23035084 0.994481008 5.42E-16 0.87889647 0.069922375 0.594750756 0.649238857 0.020804903 0.801719063 7.10E-05 4.1485063 -0.994481008 down PEPAK(ac)SAPAPK(ac)K(ac)GSK ddPTM_HeLa_A486_30min_R1 1 PEPAKSAPAPKKGSK 15 3 P62807;O60814;P57053;Q16778;P06899 P62807;Q16778 HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BE;HIST1H2BJ Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-E;Histone H2B type 1-J 0 3 PEPAK(1)SAPAPK(1)K(1)GSK 160.78 2.59E-07 36399000 9903.3 11111 8957.7 9932.5 19995 29142 29087 26509 16889 38989 FALSE TRUE FALSE 9209.129811 10230.52389 12426.36134 23123.36196 17487.04065 25546.75633 21809.12495 20473.47939 18352.95212 29225.90062 0.31510166 0.35004991 0.425183179 0.791194162 0.598340523 0.87411357 0.746225933 0.700525183 0.627968744 1 14.83495986 -5.160383077 3.517104929 0.748232314 0.340461857 0.732378866 0.110927715 0.123489348 2.840552751 0.029804597 0.055319462 6.91E-06 5.160383077 -0.407770458 PEPSK(ac)SAPAPK ddPTM_HeLa_A485_30min_R1 2 PEPSKSAPAPK 11 1 U3KQK0;Q99877 U3KQK0 HIST1H2BN Histone H2B;Histone H2B type 1-N 0 1 ; PEPSK(1)SAPAPK;PEPSK(1)SAPAPK 190.57 4.35E-09 222630000 44871 38154 35599 115395 96357 211900 453940 692530 372990 1155340 FALSE TRUE FALSE 54852.39915 42615.7784 48768.5515 121698.7367 86763.35875 222994.7563 356952.0107 522685.9317 447845.6717 867335.0005 0.06324246 0.049134162 0.056228045 0.140313416 0.100034426 0.257103376 0.411550336 0.602634428 0.516346823 1 19.7262298 -7.507583638 0.460988769 1.008187654 0.007236302 0.964098685 0.056294306 0.155975111 0.086561112 0.063352023 0.041601247 3.11E-08 7.507583638 -1.000951352 down PEPSK(ac)SAPAPK ddPTM_HeLa_A486_30min_R1 2 PEPSKSAPAPK 11 1 U3KQK0;Q99877 U3KQK0 HIST1H2BN Histone H2B;Histone H2B type 1-N 0 1 ; PEPSK(1)SAPAPK;PEPSK(1)SAPAPK 169.58 1.65E-05 547010000 540650 553810 278360 330300 601950 771450 952990 855550 507640 1192440 FALSE TRUE FALSE 502753.2269 509924.0787 386148.4467 768955.0924 526447.818 676276.3425 714541.8223 660759.9415 551642.6439 893845.2625 0.562461142 0.570483617 0.43200816 0.860277639 0.588969747 0.756592188 0.799402147 0.73923303 0.617156758 1 19.76966558 -11.85782275 0.054797057 2.048148403 4.39E-14 0.513698071 0.111679899 249.1102322 1.52760898 48.42704022 16.0358443 1.39E-12 11.85782275 -2.048148403 PEPTK(ac)SAPAPK ddPTM_HeLa_A485_30min_R1 2 PEPTKSAPAPK 11 1 P58876 P58876 HIST1H2BD Histone H2B type 1-D 0 1 ; PEPTK(1)SAPAPK;PEPTK(1)SAPAPK 184.24 1.44E-08 583050000 181393 147358 107690 363000 322660 609700 1350280 1864970 1006960 2999300 FALSE TRUE FALSE 221743.2471 164590.2363 147529.0124 382829.7708 290534.8375 641622.9492 1061781.647 1407583.183 1209047.636 2251629.708 0.098481223 0.07309827 0.065520992 0.170023414 0.129033134 0.284959355 0.471561395 0.625139728 0.536965573 1 21.10253816 -7.402684717 0.463630421 1.000020206 0.028046793 0.957222135 0.060443492 0.172201826 0.094166414 0.067512348 0.046421334 3.96E-08 7.402684717 -0.971973413 down PEPTK(ac)SAPAPK ddPTM_HeLa_A486_30min_R1 2 PEPTKSAPAPK 11 1 P58876 P58876 HIST1H2BD Histone H2B type 1-D 0 1 ; PEPTK(1)SAPAPK;PEPTK(1)SAPAPK 184.36 1.42E-08 1084700000 1213700 1280470 644090 860350 1433640 1706730 2138800 1967200 1178050 2688200 FALSE TRUE FALSE 1128625.898 1179000.894 893498.8973 2002938.28 1253819.503 1496171.005 1603649.618 1519311.504 1280164.323 2015057.223 0.560096202 0.58509549 0.443411178 0.993985807 0.622225259 0.742495542 0.795833289 0.753979334 0.63529924 1 20.94238938 -6.972783957 0.064140724 1.482295999 6.43E-18 0.382052113 0.135570746 34.63099703 1.684550291 17.63043062 20.14756516 1.06E-07 6.972783957 -1.482295999 PEPVK(ac)SAPVPK ddPTM_HeLa_A486_30min_R1 2 PEPVKSAPVPK 11 1 Q99879 Q99879 HIST1H2BM Histone H2B type 1-M 0 1 ; PEPVK(1)SAPVPK;PEPVK(1)SAPVPK 133.89 0.004078 63034000 36839 45701 26282.5 26542.2 55290 59995 69156 63964 41444 81798 FALSE TRUE FALSE 34256.77634 42079.48632 36459.78787 61791.58297 48355.01264 52593.42688 51852.43734 49400.79352 45036.39929 61315.24838 0.558699137 0.68628094 0.594628397 1.007768615 0.788629483 0.857754446 0.845669531 0.805685288 0.734505698 1 15.90395828 -5.23895778 24.99610643 0.850740751 0.6205106 0.632914267 0.086732737 532.2532155 591783.5452 0.022601691 0.039111383 5.77E-06 5.23895778 -0.230230152 PERTVLGSRELCDSEGK ddPTM_HeLa_A486_30min_R1 1 PERTVLGSRELCDSEGK 17 2 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 0 0 60.209 0.033002 69890000 9739 1723 2221.8 0 2667.7 1328.4 1604.1 1882.9 0 3130.7 FALSE FALSE TRUE 9056.346392 1586.463205 3082.140462 0 2333.092191 1164.515514 1202.737214 1454.204773 0 2346.752343 3.859097625 0.67602498 1.313364178 0 0.994179125 0.49622429 0.512511351 0.61966691 0 1 11.19644988 -3.19536279 1.389916256 0.552511139 47.62637725 0.844235073 0.413665715 7.396858396 1.190739101 0.109251423 943.8706864 0.000637731 3.19536279 47.07386611 PFLLPRRPT(ph)PVR ddPTM_HeLa_A485_30min_R1 1 PFLLPRRPTPVR 12 2 M0R2X0 M0R2X0 ZNF256 1 0 PFLLPRRPT(1)PVR 43.68 0.013115 0 117280 137820 129920 128560 164370 110170 161840 186780 122060 180360 TRUE FALSE FALSE 143368.5314 153936.8501 177982.8144 135582.9073 148004.7457 115938.3308 127261.5619 140971.9121 146556.3224 135399.5713 1.058855135 1.136907958 1.314500576 1.001354037 1.093096117 0.856268079 0.939896343 1.04115479 1.082398718 1 17.04686365 -5.368142545 11.90313825 0.998671727 1.166726338 0.438451606 0.087080882 0.614477329 65.35707819 0.025634799 0.038025281 4.28E-06 5.368142545 0.168054611 PFSAPKPQT(ph)SPSPK ddPTM_HeLa_A485_30min_R1 2 PFSAPKPQTSPSPK 14 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 PFSAPKPQT(0.5)S(0.5)PSPK;PFSAPKPQT(0.499)S(0.499)PS(0.001)PK ; 149 7.66E-08 998870000 935170 331790 338150 2243400 663510 580180 1120330 684950 651000 2993900 TRUE FALSE FALSE 1143195.34 370589.9543 463245.7566 2365951.261 597448.6147 610557.3277 880962.3432 516964.9385 781649.7287 2247575.829 0.508634826 0.164884294 0.206109067 1.052668049 0.265819114 0.271651492 0.391961122 0.23001001 0.347774575 1 21.09993836 -10.60916687 2.781961075 1.050737926 0.379460021 0.366377391 0.243725453 48727536.06 47232058.41 17999093.12 0.06432114 2.46E-11 10.60916687 -0.671277905 PFSAPKPQT(ph)SPSPK ddPTM_HeLa_A486_30min_R1 2 PFSAPKPQTSPSPK 14 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 PFSAPKPQT(0.672)S(0.326)PS(0.002)PK;PFSAPKPQT(0.607)S(0.393)PSPK ; 139.49 4.23E-06 1163270000 1196470 1415080 457170 883850 1092760 2167600 2277600 2218800 1124550 2846300 TRUE FALSE FALSE 1112603.632 1302943.907 634198.4674 2057647.467 955695.8512 1900183.551 1707720.39 1713627.676 1222026.899 2133567.954 0.521475601 0.610687794 0.297247841 0.964416185 0.447933167 0.890613091 0.800405906 0.803174641 0.572762118 1 21.02483663 -5.260691759 24.99958883 0.765835086 0.489892158 0.390539727 0.174202868 73.61910734 2461700.455 0.045783505 0.073696863 5.49E-06 5.260691759 -0.275942928 PGGARPCS(ph)PGLER ddPTM_HeLa_A486_30min_R1 1 PGGARPCSPGLER 13 1 P23677 P23677 ITPKA Inositol-trisphosphate 3-kinase A 1 0 PGGARPCS(1)PGLER 80.738 0.002379 489170000 115810 132270 93149 60345 141170 144080 144280 151730 104660 158450 TRUE FALSE FALSE 107692.317 121788.4435 129218.7874 140486.2097 123463.1422 126304.8745 108179.618 117184.3912 113732.0131 118773.0887 0.906706378 1.025387526 1.087946679 1.182811791 1.03948751 1.063413235 0.910809167 0.986624096 0.957557089 1 16.85784847 -6.743037612 24.74263913 0.96263293 1.056949702 0.284285008 0.067380531 281.4643819 378451.1668 0.027438862 0.021211014 1.81E-07 6.743037612 0.094316771 PGHLQEGFGCVVTNRFDQLFDDES(ph)DPFEVLK ddPTM_HeLa_A485_30min_R1 1 PGHLQEGFGCVVTNRFDQLFDDESDPFEVLK 31 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 PGHLQEGFGCVVTNRFDQLFDDES(1)DPFEVLK 175.75 2.88E-15 38345000 8575.9 7462.2 6096.5 7681 11849 12505 16071 19934 6294.4 14020 TRUE FALSE FALSE 10483.57937 8334.839377 8351.849047 8100.593581 10669.27196 13159.74246 12637.29956 15045.15524 7557.628344 10525.07202 0.996057732 0.791903311 0.79351942 0.76964733 1.013700613 1.25032327 1.200685329 1.429458651 0.718059537 1 13.36154248 -5.964467518 4.412167551 1.150937295 0.833386704 0.338534493 0.182936078 0.20748992 9.241622663 0.057264684 0.063781404 1.09E-06 5.964467518 -0.31755059 PGHLQEGFGCVVTNRFDQLFDDES(ph)DPFEVLK ddPTM_HeLa_A486_30min_R1 2 PGHLQEGFGCVVTNRFDQLFDDESDPFEVLK 31 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 PGHLQEGFGCVVTNRFDQLFDDES(1)DPFEVLK;PGHLQEGFGCVVTNRFDQLFDDES(1)DPFEVLK ; 227.46 2.21E-39 83284000 12665.4 15700.4 12277.1 15221 20559.4 18266.6 24975 26420 10849.8 26663 TRUE FALSE FALSE 11777.62086 14456.24312 17031.12191 35435.25723 17980.64834 16013.05261 18725.99084 20404.74274 11790.2694 19986.41125 0.589281423 0.723303596 0.852135068 1.772967482 0.899643669 0.801196994 0.936936131 1.020930796 0.58991428 1 14.28673183 -9.890199706 14.21250815 0.999999998 0.928413001 0.004083833 0.318809637 0 0 0.321987412 0.078093418 1.29E-10 9.890199706 -0.071586996 PGHVS(ph)PLQLTNIQVPQQALPTQR ddPTM_HeLa_A486_30min_R1 1 PGHVSPLQLTNIQVPQQALPTQR 23 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 0 PGHVS(0.661)PLQLT(0.339)NIQVPQQALPTQR 70.67 0.00030554 0 81617 75174 58105 68841 100870 98979 129640 138540 71814 148590 TRUE FALSE FALSE 75896.06977 69216.93846 80604.81211 160265.327 88217.94402 86767.97732 97202.70081 106997.4663 78038.89534 111382.0968 0.681402774 0.621436842 0.72367835 1.438878703 0.792029837 0.779011886 0.872695914 0.960634333 0.700641284 1 16.76515783 -5.019673503 24.91328513 0.930715566 0.656704108 0.284044586 0.19087358 911.8747293 1154743.345 0.052348013 0.092397597 9.56E-06 5.019673503 -0.274011458 PGMYPDPHS(ph)PFAVS(ph)PIPGR ddPTM_HeLa_A486_30min_R1 1 PGMYPDPHSPFAVSPIPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 2 0 PGMY(0.013)PDPHS(0.987)PFAVS(1)PIPGR 56.72 0.02596 33580000 78792 70671 44802 34862 59674 81024 86293 79728 65862 116690 TRUE FALSE FALSE 73269.08768 65070.77258 62150.53424 81160.49783 52189.13048 71028.08267 64701.57869 61575.67485 71570.97119 87470.06448 0.837647578 0.743920483 0.710534908 0.927865988 0.596651332 0.812027327 0.73969968 0.703962838 0.818233891 1 16.41650174 -8.06251075 7.711707254 0.9999988 0.758358209 0.429324651 0.08357841 1.013651485 124.7314288 0.075664808 0.019574823 8.66E-09 8.06251075 -0.241640591 PGPTPSGTNVGSSGRS(ph)PSK ddPTM_HeLa_A485_30min_R1 6 PGPTPSGTNVGSSGRSPSK 19 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 0 PGPTPSGTNVGS(0.001)S(0.022)GRS(0.977)PSK;PGPTPSGTNVGSSGRS(0.945)PS(0.055)K;PGPTPSGTNVGSS(0.013)GRS(0.985)PS(0.001)K;PGPTPSGTNVGSS(0.03)GRS(0.969)PS(0.001)K;PGPTPSGTNVGS(0.002)S(0.069)GRS(0.928)PS(0.001)K;PGPTPSGTNVGS(0.009)S(0.316)GRS(0.673)PS(0.001)K ;;;;; 225.56 3.34E-35 30487700000 3585610 2149930 928202 4963650 2071080 2765090 4350160 5452020 2011380 11094700 TRUE FALSE FALSE 4383216.574 2401345.612 1271582.546 5234801.631 1864876.003 2909865.837 3420712.778 4114903.547 2415045.517 8328995.473 0.52625993 0.288311552 0.152669376 0.628503359 0.223901671 0.34936576 0.41069932 0.494045598 0.289956397 1 22.98971108 -13.70962665 0.424378848 9.999999664 0.361971826 0.646244465 0.138623893 454.6422113 3.785766997 3788.227012 0.078255676 1.95E-14 13.70962665 -9.638027837 PGPTPSGTNVGSSGRS(ph)PSK ddPTM_HeLa_A486_30min_R1 5 PGPTPSGTNVGSSGRSPSK 19 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 0 PGPTPSGTNVGSS(0.001)GRS(0.993)PS(0.006)K;PGPTPSGTNVGSS(0.001)GRS(0.998)PS(0.001)K;PGPTPSGTNVGS(0.001)S(0.003)GRS(0.996)PSK;PGPTPSGTNVGS(0.001)S(0.024)GRS(0.971)PS(0.004)K;PGPTPSGTNVGS(0.006)S(0.055)GRS(0.938)PSK ;;;; 189.99 1.02E-18 19568400000 3420340 2784260 1504042 1794590 3280500 3680670 4884250 4058590 2523870 5901720 TRUE FALSE FALSE 3180591.829 2563625.097 2086447.342 4177896.214 2869029.101 3226586.358 3662158.99 3134537.655 2742641.084 4423890.898 0.718958017 0.579495552 0.471631736 0.944394044 0.648530709 0.729354867 0.827814038 0.708547685 0.619961284 1 22.07688438 -14 0.175340891 2.164589892 0.631666592 0.346424496 0.124432351 157.2920289 1.500091823 64.24483955 0.424874366 1.00E-14 14 -1.532923299 PGPTPSGTNVGSSGRS(ph)PSKAVAAR ddPTM_HeLa_A485_30min_R1 2 PGPTPSGTNVGSSGRSPSKAVAAR 24 2 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 0 PGPTPSGTNVGSS(0.007)GRS(0.987)PS(0.005)KAVAAR;PGPTPSGTNVGSSGRS(0.997)PS(0.003)KAVAAR ; 248.28 1.10E-49 1395570000 430630 582980 155797 375640 478030 998230 1439450 4239400 324320 891950 TRUE FALSE FALSE 526422.1578 651154.4397 213432.7936 396160.262 430435.6547 1050495.779 1131899.748 3199680.503 389408.0492 669603.2801 0.78617022 0.972448103 0.318745143 0.591634291 0.642821903 1.568833084 1.69040353 4.778471967 0.581550391 1 19.35294707 -6.565117118 2.238218918 2.347977833 0.658915647 0.248823228 1.068474322 0.3533669 3.579720702 0.451018359 0.339083756 2.72E-07 6.565117118 -1.689062187 PGPTPSGTNVGSSGRS(ph)PSKAVAAR ddPTM_HeLa_A486_30min_R1 2 PGPTPSGTNVGSSGRSPSKAVAAR 24 2 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 0 PGPTPSGTNVGS(0.001)S(0.002)GRS(0.952)PS(0.045)KAVAAR;PGPTPSGTNVGS(0.007)S(0.027)GRS(0.96)PS(0.005)KAVAAR ; 140.45 1.56E-07 486240000 415740 91928 86171 112679 213450 94555 177654 180423 100819 266850 TRUE FALSE FALSE 386598.7729 84643.29048 119538.7189 262322.4065 186677.1107 82889.76546 133203.0902 139344.6215 109558.0721 200029.0231 1.932713398 0.423155046 0.597606873 1.311421725 0.933250124 0.414388693 0.665918816 0.696622017 0.547710879 1 17.60984982 -6.08134588 7.979210308 0.647602479 1.003387172 0.173972627 0.406353389 0.621120745 55.26691267 0.132370915 0.132668399 8.29E-07 6.08134588 0.355784694 PGQT(ph)CS(ph)VAGWGQT(ph)APLGKHSHT(ph)LQEVK ddPTM_HeLa_A486_30min_R1 1 PGQTCSVAGWGQTAPLGKHSHTLQEVK 27 1 Q6XGZ2;J3KPK2;J3KQ52;P10144 Q6XGZ2 GZMB Granzyme B 4 0 PGQT(0.761)CS(0.761)VAGWGQT(0.761)APLGKHS(0.761)HT(0.955)LQEVK 43.162 0.022574 49769000 1114.1 833.1 1939 0 1828 2032.4 1241.9 1414.1 0 0 TRUE FALSE FALSE 1036.007343 767.0821219 2689.832728 0 1598.715195 1781.663152 931.1634845 1092.1403 0 0 0 PGS(ph)LPLNAEACWPK ddPTM_HeLa_A485_30min_R1 1 PGSLPLNAEACWPK 14 0 Q01581;D6RIW1 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 PGS(1)LPLNAEACWPK 105.14 0.00037274 52446000 58013 33040 23567 107100 55174 51115 88762 70578 32791 132540 TRUE FALSE FALSE 70917.79171 36903.74059 32285.414 112950.6018 49680.68283 53791.30236 69797.27358 53268.63484 39371.85292 99500.21722 0.712740069 0.370891056 0.324475814 1.13517945 0.499302255 0.540614924 0.701478605 0.535361995 0.39569615 1 16.60241205 -10.38210893 3.023409869 1.005648129 0.581015442 0.243731273 0.222185074 63941359.67 79005136.2 3164440.228 0.056450652 4.15E-11 10.38210893 -0.424632687 PGS(ph)SIPGSPGHTIYAK ddPTM_HeLa_A486_30min_R1 1 PGSSIPGSPGHTIYAK 16 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;A0A0A0MRL6;A0A3B3IS55;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 PGS(0.47)S(0.47)IPGS(0.06)PGHTIYAK 62.203 0.016174 151050000 87908 84151 47504 14632 76551 85121 79715 89814 67061 71642 TRUE FALSE FALSE 81746.10316 77482.56829 65898.821 34064.03546 66949.25977 74619.63647 59769.46386 69365.31283 72873.90147 53702.37689 1.522206425 1.442814504 1.227111812 0.634311504 1.246672189 1.389503422 1.112976135 1.291661875 1.35699583 1 15.71269832 -4.769013906 4.199121963 1.156337571 1.494654573 0.291809383 0.205652625 0.262081953 10.59269898 0.057181964 0.145768859 1.70E-05 4.769013906 0.338317002 PGWLS(ph)SPTLGR ddPTM_HeLa_A485_30min_R1 1 PGWLSSPTLGR 11 0 C9JS59;C9J266;Q5XPI4;Q5XPI4-2 C9JS59 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 PGWLS(0.589)S(0.369)PT(0.042)LGR 64.439 0.021153 229170000 367200 265330 283520 704010 399040 298040 423290 301620 348160 907460 TRUE FALSE FALSE 448882.3732 296358.0354 388405.8463 742468.2837 359310.1765 313644.9135 332850.6335 227647.2221 418032.5185 681246.9226 0.658912882 0.435022935 0.570139598 1.089866624 0.527430165 0.460398283 0.488590293 0.334162569 0.613628487 1 19.37781828 -8.041287519 22.73839055 1.000000005 0.5691503 0.305607308 0.192994989 3630.627062 1999503.448 0.198455466 0.051240981 9.09E-09 8.041287519 -0.430849705 PGWLSS(ph)PTLGR ddPTM_HeLa_A485_30min_R1 4 PGWLSSPTLGR 11 0 C9JS59;C9J266;Q5XPI4;Q5XPI4-2 C9JS59 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 PGWLS(0.024)S(0.976)PTLGR;PGWLS(0.207)S(0.791)PT(0.002)LGR;PGWLSS(0.998)PT(0.002)LGR;PGWLS(0.001)S(0.999)PT(0.001)LGR ;;; 225.55 4.66E-18 855893000 1642790 1120970 1161490 2809660 1653120 1197190 1770280 1342120 1414460 3526770 TRUE FALSE FALSE 2008222.968 1252057.69 1591173.485 2963144.611 1488529.568 1259873.017 1392045.216 1012962.966 1698329.148 2647611.144 0.758503745 0.472900899 0.600984585 1.119176665 0.562216084 0.47585274 0.525774043 0.382595068 0.641457168 1 21.33625982 -8.045832293 22.6426589 1.000000004 0.608592795 0.260616484 0.194767553 5326.667043 2631545.395 0.199006574 0.051383276 9.00E-09 8.045832293 -0.391407208 PGWLSS(ph)PTLGR ddPTM_HeLa_A486_30min_R1 6 PGWLSSPTLGR 11 0 C9JS59;C9J266;Q5XPI4;Q5XPI4-2 C9JS59 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 PGWLSS(0.998)PT(0.001)LGR;PGWLSS(0.992)PT(0.008)LGR;PGWLS(0.194)S(0.805)PT(0.001)LGR;PGWLS(0.23)S(0.769)PT(0.001)LGR;PGWLSS(1)PTLGR;PGWLSS(1)PTLGR ;;;;; 268.14 5.48E-28 1411543000 3301980 3879000 2332480 1604815 3200180 4138960 4298660 4178580 3114300 4916850 TRUE FALSE FALSE 3070528.253 3571613.913 3235678.722 3736090.423 2798783.584 3628337.197 3223089.801 3227208.552 3384250.032 3685638.757 0.833106133 0.969062393 0.877915318 1.013688717 0.759375449 0.984452747 0.87449965 0.875617163 0.91822619 1 21.81348324 -8.033289877 20.41005172 1.000000003 0.901124687 0.152817983 0.071307314 693.8641576 425410.9615 0.063195095 0.016316903 9.26E-09 8.033289877 -0.098875316 PHS(ph)IDGR ddPTM_HeLa_A485_30min_R1 1 PHSIDGR 7 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 PHS(1)IDGR 90.15 0.0039079 0 32940 23551 21615 68388 28261 24073 34473 23982 30235 78531 TRUE FALSE FALSE 40267.38936 26305.08458 29611.28798 72123.86327 25447.23561 25333.42506 27107.56193 18100.3769 36302.88717 58954.66696 0.68302293 0.446191726 0.502272161 1.223378351 0.431640732 0.429710256 0.459803495 0.307021951 0.615776308 1 15.8473184 -8.035889043 22.98451991 1.000000008 0.558278759 0.228813313 0.240626937 3276.226109 2098201.087 0.242086846 0.062506555 9.21E-09 8.035889043 -0.441721249 PIRPGQHPAAS(ph)PTHPSAIR ddPTM_HeLa_A485_30min_R1 1 PIRPGQHPAASPTHPSAIR 19 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 0 PIRPGQHPAAS(0.796)PT(0.204)HPSAIR 160.69 1.62E-12 305370000 232210 225330 291640 146680 319510 197230 251330 216400 341320 366040 TRUE FALSE FALSE 283864.3134 251680.3834 399529.7722 154692.757 287698.4625 207556.6578 197631.2923 163327.5607 409819.7932 274792.9645 1.033011576 0.915890929 1.453930136 0.562942932 1.046964441 0.755320131 0.7192007 0.594365875 1.491376586 1 18.06798554 -5.267686256 24.99729784 0.859431813 1.112438883 0.138564191 0.283638482 957.7503993 3832505.283 0.076853369 0.117341206 5.40E-06 5.267686256 0.25300707 PIRPGQHPAAS(ph)PTHPSAIR ddPTM_HeLa_A486_30min_R1 4 PIRPGQHPAASPTHPSAIR 19 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 0 PIRPGQHPAAS(0.998)PT(0.002)HPSAIR;PIRPGQHPAAS(0.99)PT(0.01)HPSAIR;PIRPGQHPAAS(0.997)PT(0.003)HPSAIR;PIRPGQHPAAS(0.975)PT(0.025)HPSAIR ;;; 183.01 2.50E-18 2481750000 1388910 1723210 1454050 108569 1689390 1421840 1391090 1396700 1705700 637223 TRUE FALSE FALSE 1291554.581 1586656.564 2017097.101 252754.1188 1477490.953 1246427.837 1043024.569 1078701.9 1853551.449 477658.2132 2.703930438 3.321740357 4.222887925 0.52915267 3.093197003 2.60945547 2.183621133 2.258313309 3.88049739 1 18.86561915 PIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 PISPGLSYASHTVGFTPPTSLTR 23 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 PIS(1)PGLSYASHTVGFTPPTSLTR 134.03 1.25E-06 134200000 75199 57959 57628 67046 76036 62989 66838 62011 61764 98834 TRUE FALSE FALSE 91926.75812 64736.80087 78946.9953 70708.55321 68465.58886 66287.00664 52557.51528 46802.70502 74159.46827 74196.5027 1.238963492 0.872504748 1.064025829 0.952990379 0.922760324 0.893397993 0.708355696 0.63079395 0.99950086 1 16.17906357 PIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 2 PISPGLSYASHTVGFTPPTSLTR 23 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 PIS(0.921)PGLS(0.079)YASHTVGFTPPTSLTR;PIS(0.997)PGLS(0.002)YASHTVGFTPPTSLTR ; 192.75 1.10E-26 223750000 155321 223340 149466 52895 187518 196937 204240 204420 182941 193981 TRUE FALSE FALSE 144433.8 205641.725 207343.238 123142.2332 163997.7439 172640.9152 153136.9918 157878.0285 198798.4732 145406.895 0.993307779 1.414250163 1.425951899 0.846880288 1.127853971 1.187295247 1.053161831 1.08576714 1.367187389 1 17.14973616 -5.235066066 24.99834639 1.102438097 1.29147794 0.198454977 0.166886219 1206.950858 1144025.425 0.044714115 0.077419379 5.82E-06 5.235066066 0.189039843 PIS(ph)PSPSAILER ddPTM_HeLa_A485_30min_R1 2 PISPSPSAILER 12 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 PIS(0.455)PS(0.224)PS(0.321)AILER;PIS(0.952)PS(0.046)PS(0.002)AILER ; 114.87 0.00028692 173387000 93890 74536 73490 150079 106301 74631 99020 77772 81954 181274 TRUE FALSE FALSE 114775.5066 83252.33682 100677.0092 158277.4357 95717.29919 78538.56376 77863.56808 58698.29506 98401.41607 136085.7279 0.843405906 0.611763909 0.739805788 1.16307153 0.703360306 0.577125647 0.57216557 0.431333219 0.723084026 1 17.05415625 -5.992220646 24.99970914 0.621950527 0.83075892 0.151480511 0.189946062 300.1232239 964467.2249 0.059114889 0.066911862 1.02E-06 5.992220646 0.208808393 PIS(ph)PSPSAILER ddPTM_HeLa_A486_30min_R1 2 PISPSPSAILER 12 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 PIS(0.919)PS(0.077)PS(0.005)AILER;PIS(0.736)PS(0.258)PS(0.005)AILER ; 113.69 0.00032168 201957000 94350 126160 80357 51001 100780 121010 123179 116517 92110 130382 TRUE FALSE FALSE 87736.55222 116162.6221 111473.3824 118732.9054 88139.23266 106081.0165 92358.31135 89988.62265 100094.169 97733.49856 0.897712182 1.188565066 1.140585204 1.214863964 0.90183237 1.085411022 0.945001588 0.920755155 1.024154158 1 16.57656552 -5.766318649 24.99983807 0.979131537 1.118166394 0.317934676 0.093656171 139.9667146 717144.1748 0.028211724 0.033017415 1.71E-06 5.766318649 0.139034856 PISPGLS(ph)YASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 PISPGLSYASHTVGFTPPTSLTR 23 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 PIS(0.442)PGLS(0.555)YAS(0.002)HTVGFTPPTSLTR 121.84 1.51E-05 321140000 59847 57891 58829 66718 74540 55403 76252 84830 66255 113350 TRUE FALSE FALSE 73159.75868 64660.84887 80592.29518 70362.6354 67118.53587 58303.81541 59960.13728 64025.30949 79551.77077 85093.93105 0.859752955 0.759876152 0.947098038 0.826881947 0.7887582 0.685170078 0.704634708 0.752407471 0.934870088 1 16.37676862 -7.903337428 4.362530925 0.997526518 0.789907621 0.499375013 0.072041933 0.177257485 5.57267106 0.0764164 0.020079624 1.25E-08 7.903337428 -0.207618898 PKFYCDYCDTYLTHDS(ph)PSVR ddPTM_HeLa_A485_30min_R1 1 PKFYCDYCDTYLTHDSPSVR 20 1 P09234 P09234 SNRPC U1 small nuclear ribonucleoprotein C 1 0 PKFYCDYCDTYLTHDS(0.987)PS(0.013)VR 220.5 1.44E-35 291410000 638820 790570 546060 512510 999480 966640 1276300 1849400 665410 777810 TRUE FALSE FALSE 780923.3051 883020.2845 748070.3175 540507.1236 899968.2618 1017251.776 1003608.079 1395831.75 798951.6835 583916.2815 1.33738916 1.51223782 1.281125978 0.925658593 1.54126249 1.742119218 1.718753373 2.390465542 1.368264097 1 19.15540201 -5.993586135 24.61925394 1.725078219 1.276844894 0.185370489 0.357568317 189.4202453 727070.2359 0.10874765 0.12298258 1.01E-06 5.993586135 -0.448233325 PKPRPS(ph)PSSTREPLLSSSENGNGGR ddPTM_HeLa_A485_30min_R1 1 PKPRPSPSSTREPLLSSSENGNGGR 25 3 M0QZR4;M0QYC1;Q92888;Q92888-3;Q92888-2;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 PKPRPS(0.981)PS(0.006)S(0.006)T(0.006)REPLLSSSENGNGGR 88.668 0.02116 196700000 36176 26051 21548 48467 30806 40112 49004 41690 33322 78665 TRUE FALSE FALSE 44223.22639 29097.43784 29519.50189 51114.62949 27738.84647 42212.2023 38533.89507 31465.46213 40009.41975 59055.26322 0.748844794 0.492715403 0.499862337 0.865538932 0.469709979 0.714791536 0.652505687 0.53281385 0.677491176 1 15.84977802 -8.03561804 20.99800059 1.000000005 0.619867986 0.462347356 0.121556536 536.3594216 316202.3291 0.111818954 0.02887153 9.21E-09 8.03561804 -0.380132019 PKPRPS(ph)PSSTREPLLSSSENGNGGR ddPTM_HeLa_A486_30min_R1 1 PKPRPSPSSTREPLLSSSENGNGGR 25 3 M0QZR4;M0QYC1;Q92888;Q92888-3;Q92888-2;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 PKPRPS(0.997)PS(0.002)S(0.001)T(0.001)REPLLSSSENGNGGR 138.34 8.43E-06 182100000 53185 53944 27976 32557 61715 63470 72494 77882 53310 85081 TRUE FALSE FALSE 49457.00615 49669.28098 38809.05642 75794.34134 53974.12923 55639.71672 54355.23444 60149.96875 57930.95372 63776.16382 0.775477909 0.778806344 0.608519768 1.188443092 0.846305673 0.872421817 0.852281341 0.943141844 0.908348045 1 15.9607297 -5.23259473 24.99999462 0.931124076 0.726721857 0.490548709 0.103700625 657.726457 570058.44 0.027780551 0.048106297 5.85E-06 5.23259473 -0.20440222 PKPSSS(ph)PVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 PKPSSSPVIFAGGQDR 16 1 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 PKPS(0.023)S(0.137)S(0.841)PVIFAGGQDR 163.64 3.23E-12 383940000 446360 241030 231630 895510 406130 365990 457740 317340 389550 1171500 TRUE FALSE FALSE 545651.2421 269216.3618 317319.5759 944429.4437 365694.2712 385152.6705 359940.1096 239511.8674 467729.1118 879466.6099 0.62043429 0.306113227 0.360809123 1.073866174 0.415813707 0.437938935 0.409270921 0.272337647 0.531832712 1 19.74626928 -10.25914262 4.650516343 1.000183935 0.487099998 0.329326521 0.217360983 104450830.9 230421481.6 133427.5269 0.053965875 5.51E-11 10.25914262 -0.513083936 PKPSSS(ph)PVIFAGGQDR ddPTM_HeLa_A486_30min_R1 2 PKPSSSPVIFAGGQDR 16 1 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 PKPS(0.001)S(0.014)S(0.985)PVIFAGGQDR;PKPS(0.004)S(0.021)S(0.974)PVIFAGGQDR ; 188.32 3.20E-18 1028860000 804330 996520 430390 397640 776000 1281460 1095990 1181950 751510 1370480 TRUE FALSE FALSE 747950.6206 917552.1259 597048.5342 925726.0156 678666.8441 1123366.494 821761.7098 912845.7868 816651.4919 1027302.888 0.728072148 0.893166112 0.581180625 0.901122762 0.660629744 1.0935105 0.799921542 0.888584854 0.794947139 1 19.97043017 -6.233884428 24.97239532 0.901212486 0.759332439 0.303348646 0.122033857 1020.98683 925296.6345 0.037999861 0.037991644 5.84E-07 6.233884428 -0.141880047 PLDY(ph)YRVNLT(ph)GT(ph)IQLLEIMKAHGVK ddPTM_HeLa_A485_30min_R1 1 PLDYYRVNLTGTIQLLEIMKAHGVK 25 2 Q5QPP1;Q5QPP3;Q5QPP4;Q14376-2;Q14376 Q5QPP1 GALE UDP-glucose 4-epimerase 3 0 PLDY(0.957)Y(0.667)RVNLT(0.688)GT(0.688)IQLLEIMKAHGVK 42.041 0.023409 604510000 220570 164320 143740 597000 195180 224130 283820 217960 171920 617510 TRUE FALSE FALSE 269635.0355 183535.7946 196915.4075 629612.5983 175747.1939 235865.1002 223179.5384 164504.9683 206422.7671 463576.1214 0.581641338 0.39591296 0.424774699 1.358164429 0.379111835 0.508794757 0.481430186 0.354860746 0.445283434 1 18.82244673 -10.19528398 4.690488094 1.000071044 0.549793317 0.191246407 0.278961388 68235361.75 148317018 34968.11673 0.069233934 6.38E-11 10.19528398 -0.450277727 PLEGSSSEDSPPEGQAPPSHS(ph)PR ddPTM_HeLa_A486_30min_R1 1 PLEGSSSEDSPPEGQAPPSHSPR 23 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 PLEGSSSEDSPPEGQAPPS(0.24)HS(0.76)PR 75.661 0.00011388 0 126870 128780 88728 87993 139900 188330 235150 200660 105390 259940 TRUE FALSE FALSE 117977.0682 118575.0038 123085.8578 204852.1509 122352.4375 165095.7594 176312.9828 154974.0984 114525.2901 194849.3321 0.605478432 0.60854714 0.631697612 1.051336172 0.627933574 0.847299591 0.904868295 0.795353501 0.587763319 1 17.57199946 -5.03816612 24.69914107 0.81931358 0.610290015 0.343283569 0.136171582 515.6599217 333708.0729 0.035655575 0.061777162 9.16E-06 5.03816612 -0.209023565 PLFPHVLCHNCAVEFNFGQK ddPTM_HeLa_A485_30min_R1 1 PLFPHVLCHNCAVEFNFGQK 20 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 117.26 2.69E-06 7560400 14996 10305 11158 28014 18485 13304 20780 19212 12993 35245 FALSE FALSE TRUE 18331.80846 11510.08011 15285.80852 29544.33388 16644.5685 14000.57687 16340.18324 14500.22688 15600.57592 26459.07014 0.692836459 0.435014536 0.577715258 1.116605146 0.629068535 0.529140926 0.617564531 0.54802481 0.589611647 1 14.69147474 -11.33814957 2.193480635 3.002903064 0.637055272 0.283201333 0.173114945 10565776.48 1204898.142 105034337.9 0.045540836 4.59E-12 11.33814957 -2.365847792 PLHYMTIMS(ph)PR ddPTM_HeLa_A486_30min_R1 1 PLHYMTIMSPR 11 0 Q8NH42 Q8NH42 OR4K13 Olfactory receptor 4K13 1 0 PLHYMT(0.002)IMS(0.998)PR 62.924 0.034275 1262800000 179930 330000 449110 9824.1 431500 149150 123180 175300 294710 33152 TRUE FALSE FALSE 167317.8362 303849.5982 623017.4196 22871.00128 377377.2464 130749.3894 92359.06113 135388.0168 320255.7001 24850.52342 6.732970302 12.22709047 25.07059546 0.920342839 15.18588724 5.261434025 3.716584137 5.448095177 12.88728188 1 14.60098862 -5.865070253 1.311293488 6.036110383 13.29118981 0.168597901 6.516377992 0.780293561 2.812327192 2.648850351 3.399769112 1.36E-06 5.865070253 7.255079428 PLKPLS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 PLKPLSPLR 9 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 PLKPLS(1)PLR 56.951 0.018416 395740000 312760 173540 138410 595570 258410 199220 302320 204860 229680 715040 TRUE FALSE FALSE 382332.383 193833.9934 189613.6187 628104.481 232681.7931 209650.8511 237726.8623 154617.7638 275774.6693 536793.6873 0.71225201 0.361095888 0.353233697 1.170104075 0.433465964 0.39056132 0.442864489 0.28803946 0.513744248 1 19.03400818 -10.0020603 4.794365935 1.000008002 0.512807304 0.258851294 0.244325585 167530097.9 6.455693153 14799.80566 0.060533952 9.95E-11 10.0020603 -0.487200698 PLKPLS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 PLKPLSPLR 9 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 PLKPLS(1)PLR;PLKPLS(1)PLR ; 73.848 0.005992 827420000 423540 471560 202980 227940 310810 553250 525970 544270 364400 641680 TRUE FALSE FALSE 393852.0332 434191.8682 281579.292 530655.8394 271825.3116 484995.64 394366.7429 420351.6023 395986.4854 480999.1514 0.81882064 0.902687389 0.585404966 1.10323654 0.565126385 1.008308723 0.819890725 0.873913397 0.823258179 1 18.87567482 -13.99999996 0.185924405 1.704862307 0.802018275 0.098215096 0.155690636 319.4794833 3.105577426 83.09637796 0.413585599 1.00E-14 13.99999996 -0.902844032 PLLSQEDS(ph)EEEENELEAINRK ddPTM_HeLa_A485_30min_R1 4 PLLSQEDSEEEENELEAINRK 21 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 PLLSQEDS(1)EEEENELEAINRK;PLLSQEDS(1)EEEENELEAINRK;PLLSQEDS(1)EEEENELEAINRK;PLLSQEDS(1)EEEENELEAINRK ;;; 232.06 1.27E-36 429926000 183973 132100 117965 348759 201990 171622 252348 194001 158143 422710 TRUE FALSE FALSE 224897.1592 147547.9459 161605.1624 367810.8211 181879.1664 180607.8625 198431.7883 146421.9506 189880.8495 317336.1764 0.708703186 0.464957849 0.509255403 1.159057329 0.573143499 0.569137325 0.625304655 0.461409576 0.598358661 1 18.27565247 -9.836840591 4.122735405 1.000005716 0.628536709 0.252775602 0.190870165 57550605.58 130000169.6 5321.485601 0.050810886 1.46E-10 9.836840591 -0.371469006 PLLSQEDS(ph)EEEENELEAINRK ddPTM_HeLa_A486_30min_R1 4 PLLSQEDSEEEENELEAINRK 21 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 PLLSQEDS(1)EEEENELEAINRK;PLLSQEDS(1)EEEENELEAINRK;PLLSQEDS(1)EEEENELEAINRK;PLLSQEDS(1)EEEENELEAINRK ;;; 212.94 1.89E-27 445469000 230947 243473 125533 143457 223016 293853 345338 352565 177997 419174 TRUE FALSE FALSE 214758.8079 224179.3128 174142.7395 333975.1459 195043.2537 257600.4045 258930.7798 272293.6459 193425.9233 314210.102 0.683487916 0.713469463 0.554223872 1.06290391 0.620741512 0.81983489 0.824068921 0.866597363 0.615594222 1 18.26137004 -14 0.116086804 1.700439261 0.642955939 0.206268604 0.142662947 260.1863147 1.97486205 44.1496161 1.480601912 1.00E-14 14 -1.057483323 PLPS(ph)S(ph)MQLAVIR ddPTM_HeLa_A485_30min_R1 1 PLPSSMQLAVIR 12 0 Q5H8C1-3;Q5H8C1-2;Q5H8C1 Q5H8C1-3 FREM1 FRAS1-related extracellular matrix protein 1 2 0 PLPS(1)S(1)MQLAVIR 57.225 0.020818 52832000 5365.5 7599.7 8580.5 5825.1 10603 5925.5 5862.8 6198.9 13172 6939.6 TRUE FALSE FALSE 6559.036964 8488.418806 11754.78401 6143.310463 9547.328091 6235.750017 4610.164885 4678.610056 15815.49958 5209.685434 1.259008254 1.629353425 2.256332779 1.179209482 1.832611241 1.19695327 0.884921929 0.898059991 3.035787819 1 12.34698055 -6.264565521 24.54927574 1.364384451 1.640802282 0.028422977 0.646248828 882.2618001 6928283.664 0.221628686 0.203728751 5.44E-07 6.264565521 0.276417831 PLPS(ph)S(ph)MQLAVIR ddPTM_HeLa_A486_30min_R1 3 PLPSSMQLAVIR 12 0 Q5H8C1-3;Q5H8C1-2;Q5H8C1 Q5H8C1-3 FREM1 FRAS1-related extracellular matrix protein 1 2 0 PLPS(1)S(1)MQLAVIR;PLPS(1)S(1)MQLAVIR;PLPS(1)S(1)MQLAVIR ;; 110.58 0.00054453 243687000 34123.1 32068.5 30282.4 11147.5 34409.7 24129.9 24089.5 24589.3 26575.3 23691.1 TRUE FALSE FALSE 31731.2469 29527.27527 42008.55627 25951.94336 30093.71457 21152.99827 18062.05231 18990.85317 28878.8684 17758.69436 1.786800666 1.66269404 2.36552054 1.461365506 1.69459049 1.191134767 1.017082221 1.069383412 1.62618196 1 14.1162379 -5.995082776 1.617852901 1.169439985 1.879771961 0.572646495 0.267595426 0.273333802 1.456282188 0.104255542 0.116114799 1.01E-06 5.995082776 0.710331977 PLPS(ph)VGPHTDK ddPTM_HeLa_A485_30min_R1 2 PLPSVGPHTDK 11 0 F8WD49;P48751;P48751-3 F8WD49 SLC4A3 Anion exchange protein 3 1 0 PLPS(1)VGPHTDK;PLPS(1)VGPHTDK ; 68.44 0.010666 1319120000 2435300 4629400 5674900 384300 5990200 3162000 2122800 2400400 4081100 722940 TRUE FALSE FALSE 2977024.083 5170768.06 7774281.662 405293.3359 5393794.655 3327557.431 1669246.438 1811698.136 4900139.336 542724.3627 5.485333417 9.527429419 14.32454888 0.746775645 9.938368398 6.13121072 3.075679945 3.338155168 9.028780855 1 19.04986015 -6.022747714 0.828503765 4.245644895 8.987282574 0.177674489 3.785549697 1.123094045 1.703784046 2.243566507 2.752063516 9.49E-07 6.022747714 4.741637678 PLS(ph)LIGSTLR ddPTM_HeLa_A486_30min_R1 1 PLSLIGSTLR 10 0 Q96BY6;H7C0I3;A0A2R8YD85;Q96BY6-3 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 PLS(1)LIGSTLR 110.08 0.00046222 0 15369 12603 10726 10146 17379 14349 15952 15160 11894 19377 TRUE FALSE FALSE 14291.71247 11604.29238 14879.39445 23620.40075 15199.16377 12578.76627 11960.64088 11708.39894 12924.9815 14524.87308 0.983947494 0.798925562 1.024407881 1.626203591 1.046423173 0.866015572 0.823459235 0.806093029 0.889851597 1 13.82623794 -6.209933047 5.01666888 0.861117268 1.107844395 0.224934219 0.203176294 0.339146292 19.25825715 0.07532741 0.074227899 6.17E-07 6.209933047 0.246727127 PLS(ph)PTK ddPTM_HeLa_A486_30min_R1 1 PLSPTK 6 0 Q13625-2;Q13625;Q13625-3;A0A3B3ISJ2;Q96KQ4;H0YJL1 Q13625-2 TP53BP2;PPP1R13B Apoptosis-stimulating of p53 protein 2;Apoptosis-stimulating of p53 protein 1 1 0 PLS(0.993)PT(0.007)K 73.665 0.026014 143590000 239210 221350 112950 153910 200740 316310 369180 314960 157850 455410 TRUE FALSE FALSE 222442.6143 203809.4199 156687.2649 358310.2582 175561.3174 277286.8882 276807.2592 243250.4835 171532.5651 341372.3718 0.651612821 0.597029627 0.458992226 1.049617039 0.514280978 0.81227103 0.810866028 0.712566404 0.502479343 1 18.38098678 -5.166234747 21.37644981 0.752615851 0.571995697 0.219470509 0.17236095 25.39458815 5696.209074 0.044669373 0.077369865 6.82E-06 5.166234747 -0.180620154 PLTS(ph)PESLSR ddPTM_HeLa_A486_30min_R1 1 PLTSPESLSR 10 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 PLT(0.035)S(0.965)PESLSR 130.01 8.27E-05 76390000 175640 223390 141210 83809 200330 248690 253970 216700 186820 243480 TRUE FALSE FALSE 163328.543 205687.7628 195890.2937 195111.5875 175202.7434 218009.1563 190424.0198 167362.1405 203013.708 182511.0232 0.894896868 1.126988163 1.073306644 1.069040018 0.95995705 1.19449857 1.043356267 0.916997437 1.112336693 1 17.47762408 -7.015348996 24.95900806 1.004835608 1.059300356 0.041935838 0.089075386 1943.325205 3160034.585 0.038966242 0.02344921 9.65E-08 7.015348996 0.054464748 PLTS(ph)PLR ddPTM_HeLa_A485_30min_R1 4 PLTSPLR 7 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 PLT(0.3)S(0.7)PLR;PLT(0.074)S(0.926)PLR;PLT(0.158)S(0.842)PLR;PLT(0.081)S(0.919)PLR ;;; 117.89 0.0013607 752470000 1731480 1149760 1238240 2628700 1669580 1224750 1585460 1050910 1505820 3337860 TRUE FALSE FALSE 2116641.752 1284214.43 1696316.503 2772299.225 1503350.753 1288876.016 1246713.519 793172.6747 1808024.262 2505792.931 0.844699387 0.512498225 0.676957973 1.106356072 0.599950113 0.514358549 0.497532539 0.316535602 0.721537777 1 21.25683577 -4.231787272 22.21293177 0.642152248 0.844700823 0.050739638 0.226476753 7453.984377 5583501.674 0.05847894 4.838645176 5.86E-05 4.231787272 0.202548575 PLTS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 PLTSPLR 7 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 PLT(0.035)S(0.965)PLR;PLT(0.025)S(0.975)PLR ; 121.67 0.0019135 540480000 1016770 1207080 742220 398450 965410 1218270 1266230 1239660 993140 1342450 TRUE FALSE FALSE 945499.6736 1111426.585 1029627.461 927611.7365 844319.2757 1067972.234 949405.8612 957416.4796 1079226.175 1006291.782 0.939587991 1.104477453 1.023189774 0.921811897 0.839040217 1.061294798 0.943469755 0.951430288 1.072478375 1 19.94061726 -10.05694428 13.77760341 1 0.982795729 0.00357002 0.077087683 0 0 0.076375529 0.018523787 8.77E-11 10.05694428 -0.017204271 PMEEDGEEKS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 PMEEDGEEKSPSK 13 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 PMEEDGEEKS(0.993)PS(0.007)K;PMEEDGEEKS(0.977)PS(0.023)K ; 153.95 1.83E-08 633250000 914740 490640 345571 2623600 842710 702460 1384990 935840 569470 3341800 TRUE FALSE FALSE 1118220.757 548016.08 473412.0933 2766920.625 758806.8335 739239.7194 1089075.572 706323.7727 683757.4055 2508750.761 0.445728119 0.218441819 0.188704315 1.102907737 0.302464017 0.294664472 0.434110709 0.281544019 0.272548958 1 21.25853772 -10.240083 4.114567881 1.000446118 0.39547587 0.346107525 0.250095772 699182635.7 1263247770 3984379.251 0.063589764 5.75E-11 10.240083 -0.604970248 PMEEDGEEKS(ph)PSK ddPTM_HeLa_A486_30min_R1 3 PMEEDGEEKSPSK 13 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 PMEEDGEEKS(0.999)PS(0.001)K;PMEEDGEEKS(0.995)PS(0.005)K;PMEEDGEEKS(0.968)PS(0.032)K ;; 123.42 1.66E-05 1297050000 985180 811040 272698 1516920 675270 1488400 2230230 1803660 646080 3687400 TRUE FALSE FALSE 916123.9695 746770.2366 378293.9687 3531466.421 590571.34 1304776.341 1672202.865 1393005.992 702082.7346 2764051.039 0.331442494 0.270172376 0.13686215 1.277641538 0.213661518 0.472052188 0.604982629 0.503972601 0.254004982 1 21.39835283 -11.52827009 2.221279248 9.037657553 0.460991843 0.220866147 0.30852728 21864871.92 1178665.003 887826467.4 0.081502067 2.96E-12 11.52827009 -8.57666571 PMEEDGEEKS(ph)PSKK ddPTM_HeLa_A486_30min_R1 1 PMEEDGEEKSPSKK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 PMEEDGEEKS(0.973)PS(0.027)KK 65.107 0.0077917 93025000 120510 104820 26894 234790 62845 204640 295590 240910 79292 555250 TRUE FALSE FALSE 112062.8713 96513.68145 37308.07705 546602.9856 54962.39409 179393.5974 221630.2556 186060.052 86165.0944 416211.7859 0.269244829 0.231885989 0.089637243 1.313280892 0.132053911 0.431015179 0.532493944 0.447032156 0.207022236 1 18.66695829 -10.99645075 2.943709597 1.570124611 0.41583525 0.222599328 0.332578947 643923580.1 603224532.7 2491518368 0.083009626 1.01E-11 10.99645075 -1.154289361 PMFIVNTNVPR ddPTM_HeLa_A485_30min_R1 2 PMFIVNTNVPR 11 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 0 ; ; 195.79 1.28E-13 77502000 61248 55041 58321 71611 84056 71053 89661 102624 54810 97378 FALSE FALSE TRUE 74872.4063 61477.56616 79896.36484 75522.9276 75687.0895 74773.22521 70504.19489 77455.30309 65809.86425 73103.45671 1.024197893 0.84096661 1.092921846 1.033096532 1.035342143 1.02284117 0.964444064 1.059529967 0.900229171 1 16.15765201 -4.767528163 24.99998968 1.01573101 0.932582254 0.200716284 0.06451268 190.215526 781020.231 0.015840406 0.034373032 1.71E-05 4.767528163 -0.083148756 PMFIVNTNVPR ddPTM_HeLa_A486_30min_R1 2 PMFIVNTNVPR 11 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 0 ; ; 152.97 0.00025985 74610000 63848 73118 60831 42004 102740 72954 90385 95368 71729 90566 FALSE FALSE TRUE 59372.58491 67323.86339 84386.39231 97787.43476 89853.39119 63953.67722 67769.717 73654.78827 77946.52747 67887.68411 0.874570781 0.991694801 1.243029475 1.440429675 1.323559529 0.942051243 0.998262319 1.084950669 1.148168898 1 16.05086225 -6.272533696 24.96507595 1.03771953 1.183055934 0.163844159 0.157455842 1550.61495 3489272.166 0.062814397 0.055907162 5.34E-07 6.272533696 0.145336404 PMMS(ph)NLKEIHLVS(ph)NEDPT(ph)VAAFK ddPTM_HeLa_A485_30min_R1 3 PMMSNLKEIHLVSNEDPTVAAFK 23 1 Q8IXQ6-3;Q8IXQ6-2;Q8IXQ6 Q8IXQ6-3 PARP9 Poly [ADP-ribose] polymerase 9 3 0 PMMS(1)NLKEIHLVS(1)NEDPT(1)VAAFK;PMMS(1)NLKEIHLVS(1)NEDPT(1)VAAFK;PMMS(1)NLKEIHLVS(1)NEDPT(1)VAAFK ;; 44.743 0.01854 7764140000 463486 5301890 7245900 174686 3191460 2203540 918370 1560630 3237670 140841 TRUE FALSE FALSE 566586.8617 5921899.915 9926459.937 184228.6539 2873707.037 2318913.947 722152.7471 1177883.046 3887440.671 105731.9307 5.358711016 56.00862366 93.88327511 1.742412653 27.17917868 21.93201176 6.830034621 11.14027747 36.76695059 1 16.69005161 -5.299064641 24.9247998 10 52.17608122 0.331567217 22.93588871 514.1563656 340601.0405 6.589812294 9.774520731 5.02E-06 5.299064641 42.17608122 PMQALAVGGPLPLPRPGWLS(ph)SPTLGR ddPTM_HeLa_A485_30min_R1 1 PMQALAVGGPLPLPRPGWLSSPTLGR 26 1 C9JS59;C9J266;Q5XPI4;Q5XPI4-2 C9JS59 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 PMQALAVGGPLPLPRPGWLS(0.499)S(0.499)PT(0.002)LGR 93.667 0.0015157 40544000 24245 22306 18925 30741 32621 20926 31613 24277 27614 43229 TRUE FALSE FALSE 29638.21661 24914.49266 25926.14503 32420.30299 29373.1387 22021.653 24858.6243 18323.02769 33155.87651 32452.80587 0.913271312 0.767714593 0.798887626 0.998998457 0.905103208 0.6785747 0.765993067 0.564605346 1.021664402 1 14.9860556 -6.23198175 24.54330929 0.776444395 0.873195908 0.038450654 0.141340684 1389.443462 1157647.225 0.045454813 0.045448001 5.86E-07 6.23198175 0.096751514 PMQALAVGGPLPLPRPGWLS(ph)SPTLGR ddPTM_HeLa_A486_30min_R1 1 PMQALAVGGPLPLPRPGWLSSPTLGR 26 1 C9JS59;C9J266;Q5XPI4;Q5XPI4-2 C9JS59 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 PMQALAVGGPLPLPRPGWLS(0.486)S(0.486)PT(0.028)LGR 67.864 0.0059277 48330000 27941 28146 15537 10548 23725 25324 31095 30040 21389 27643 TRUE FALSE FALSE 25982.48019 25915.60845 21553.3425 24556.27707 20749.18927 22199.78236 23314.70211 23200.54777 23243.01574 20721.01287 1.253919408 1.250692165 1.040168385 1.185090575 1.001359798 1.071365695 1.125171933 1.119662823 1.121712335 1 14.33880691 -4.750291821 24.98635428 1.089151625 1.252305907 0.595953268 0.055560065 142.1743792 318666.5631 0.01367904 0.035482247 1.78E-05 4.750291821 0.163154282 PPGS(ph)T(ph)SFSQK ddPTM_HeLa_A485_30min_R1 1 PPGSTSFSQK 10 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 2 0 PPGS(0.62)T(0.757)S(0.62)FS(0.002)QK 91.636 0.0077911 1444000000 977420 2354500 2662400 152790 1705000 1876100 941850 1409300 1975900 222910 TRUE FALSE FALSE 1194843.707 2629838.294 3647332.552 161136.5308 1535244.213 1974329.695 740616.0533 1063666.965 2372445.006 167342.6394 7.140103153 15.71529112 21.79559594 0.962913764 9.174256001 11.7981269 4.425746218 6.356221997 14.17716976 1 17.35244557 -5.263805343 24.99972638 7.268235797 14.96682595 0.333931639 5.179725143 250.068063 2642328.574 1.429056484 2.238885051 5.45E-06 5.263805343 7.698590155 PPGS(ph)T(ph)SFSQK ddPTM_HeLa_A486_30min_R1 1 PPGSTSFSQK 10 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 2 0 PPGS(0.618)T(0.764)S(0.618)FSQK 92.239 0.0075482 1381000000 1204800 2358600 3075200 20822 2823000 998920 546610 1014500 1939400 150390 TRUE FALSE FALSE 1120349.742 2171695.946 4265999.797 48474.66829 2468913.017 875683.4067 409842.3965 783520.4964 2107508.754 112731.3651 9.938225625 19.26434532 37.84217278 0.430001608 21.90085265 7.767877251 3.635566695 6.950332727 18.69496348 1 16.78252945 -5.282848064 24.98908102 9.183059467 22.03986249 0.319395803 9.151097926 975.4470051 1138578.919 2.562237986 3.804390272 5.21E-06 5.282848064 12.85680302 PPQDQS(ph)VIK ddPTM_HeLa_A485_30min_R1 4 PPQDQSVIK 9 0 Q58EX2-2;Q58EX2-3;Q58EX2;Q58EX2-4 Q58EX2-2 SDK2 Protein sidekick-2 1 0 PPQDQS(1)VIK;PPQDQS(1)VIK;PPQDQS(1)VIK;PPQDQS(1)VIK ;;; 96.665 0.0024765 290977000 580840 723780 796990 365029 823100 687950 678380 720540 737160 448830 TRUE FALSE FALSE 710045.8541 808419.775 1091829.767 384969.61 741149.2739 723969.9982 533438.5711 543826.4352 885101.2504 336944.9411 2.107305282 2.399263726 3.240380351 1.142529722 2.199615378 2.148629969 1.583162428 1.613991988 2.626842378 1 18.36215334 -9.844689061 0.126943976 3.95E-12 2.798973948 0.262512045 0.558000943 48.0881099 1.335169893 25.26210691 6.678787121 1.43E-10 9.844689061 2.798973948 PPQDQS(ph)VIK ddPTM_HeLa_A486_30min_R1 4 PPQDQSVIK 9 0 Q58EX2-2;Q58EX2-3;Q58EX2;Q58EX2-4 Q58EX2-2 SDK2 Protein sidekick-2 1 0 PPQDQS(1)VIK;PPQDQS(1)VIK;PPQDQS(1)VIK;PPQDQS(1)VIK ;;; 98.048 0.0022502 376534000 676110 912150 839840 52554 1093780 759140 650360 797080 748230 365240 TRUE FALSE FALSE 628718.1804 839867.912 1165048.54 122348.3679 956587.9133 665485.0252 487633.0492 615602.2841 813087.1788 273781.5267 2.296422947 3.067657348 4.255395 0.446883212 3.493982684 2.43071559 1.78110282 2.248516515 2.969839451 1 18.06266558 -10.15527208 0.21068436 5.61E-16 2.927842964 0.1821663 0.974093051 35.8761319 1.590290479 25.7052101 2.514448795 6.99E-11 10.15527208 2.927842964 PPYTVVYFPVR ddPTM_HeLa_A485_30min_R1 2 PPYTVVYFPVR 11 0 P09211;A8MX94;A0A2R8Y5E5 P09211 GSTP1 Glutathione S-transferase P 0 0 ; ; 141.48 0.0010689 87263000 43827 47429 46258 51169 63178 55955 69350 77069 44252 77365 FALSE FALSE TRUE 53576.16495 52975.40897 63370.75916 53964.2329 56887.77649 58884.71728 54532.80596 58167.70691 53132.9705 58079.3293 0.922465283 0.912121569 1.091106938 0.929146971 0.979484047 1.013867033 0.938936565 1.001521671 0.914834437 1 15.82573717 PPYTVVYFPVR ddPTM_HeLa_A486_30min_R1 2 PPYTVVYFPVR 11 0 P09211;A8MX94;A0A2R8Y5E5 P09211 GSTP1 Glutathione S-transferase P 0 0 ; ; 138.4 0.001286 84136000 50347 48312 41754 22406 58921 53601 60305 60730 51878 67976 FALSE FALSE TRUE 46817.93529 44483.58117 57922.26701 52162.30034 51530.57876 46988.2536 45216.05116 46903.10473 56374.82681 50954.36715 0.918820857 0.873008216 1.136747844 1.023706176 1.011308385 0.922163422 0.887383235 0.920492341 1.106378706 1 15.63691818 -6.241247115 24.22307726 0.957320535 0.995790924 0.014416134 0.085680997 2247.453509 2696094.15 0.029881921 0.029834877 5.74E-07 6.241247115 0.038470389 PQTS(ph)PSPKR ddPTM_HeLa_A486_30min_R1 1 PQTSPSPKR 9 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 PQT(0.209)S(0.748)PS(0.043)PKR 56.02 0.023388 343510000 349810 224830 176550 229560 257690 553920 552340 460650 342300 667140 TRUE FALSE FALSE 325290.1254 207013.652 244914.8882 534427.2813 225368.1173 485582.9822 414138.6899 355770.0509 371970.8396 500083.8016 0.65047123 0.413957923 0.489747693 1.068675449 0.450660702 0.971003221 0.828138581 0.711420865 0.743817013 1 18.93181035 -5.219427174 24.98493267 0.803432168 0.507648676 0.389937199 0.174254943 495.2668246 294537.763 0.044586699 0.077225625 6.03E-06 5.219427174 -0.295783492 PRAS(ph)PPPQGPLPGPPGALHR ddPTM_HeLa_A485_30min_R1 2 PRASPPPQGPLPGPPGALHR 20 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 PRAS(1)PPPQGPLPGPPGALHR;PRAS(1)PPPQGPLPGPPGALHR ; 82.885 0.00093561 419040000 156886 151855 127642 198809 187961 170839 217480 212465 158875 240800 TRUE FALSE FALSE 191784.7494 169613.1213 174862.0874 209669.4323 169246.9429 179783.8659 171013.6214 160357.6256 190759.7552 180772.9916 1.06091484 0.938265832 0.967302061 1.159849325 0.936240206 0.994528355 0.946013118 0.887066282 1.055244777 1 17.46381962 PRAS(ph)PPPQGPLPGPPGALHR ddPTM_HeLa_A486_30min_R1 1 PRASPPPQGPLPGPPGALHR 20 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 PRAS(1)PPPQGPLPGPPGALHR 90.468 0.00035378 166530000 114400 115940 78888 50360 121100 123050 128560 149950 85070 139930 TRUE FALSE FALSE 106381.1508 106752.4922 109435.5463 117240.6251 105910.5088 107869.3421 96392.92823 115809.6584 92443.9361 104890.6172 1.014210361 1.017750634 1.043330178 1.117741779 1.009723382 1.028398392 0.918985232 1.104099313 0.881336563 1 16.6785261 -6.375443491 2.625867431 0.984700683 1.044886564 0.182623447 0.061850282 0.523526915 7.033676733 0.023220576 0.019995431 4.21E-07 6.375443491 0.060185882 PRPPGRPVS(ph)GHGMDSR ddPTM_HeLa_A485_30min_R1 3 PRPPGRPVSGHGMDSR 16 2 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR ;; 108.45 9.84E-05 433590000 470590 241894 319680 749910 419030 277230 358120 211070 437960 923760 TRUE FALSE FALSE 575271.122 270181.3991 437942.935 790875.6844 377309.9019 291745.3341 281604.7364 159304.7516 525854.5548 693483.6325 0.829538139 0.389600254 0.631511566 1.140438862 0.54407903 0.420695342 0.40607265 0.229716671 0.758279691 1 19.40350231 -8.004504551 24.97843969 1.000000055 0.57172973 0.230574337 0.243850654 233.5967017 1295338.126 0.250038813 0.064559744 9.90E-09 8.004504551 -0.428270325 PRPPGRPVS(ph)GHGMDSR ddPTM_HeLa_A486_30min_R1 4 PRPPGRPVSGHGMDSR 16 2 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(1)GHGMDSR;PRPPGRPVS(0.999)GHGMDS(0.001)R ;;; 56.708 0.015556 866380000 377740 489398 332629 171452 364205 515809 461607 477406 376924 457755 TRUE FALSE FALSE 351262.3767 450616.3201 461431.8569 399148.9207 318523.0128 452173.7299 346108.0462 368711.0755 409596.0758 343130.1685 1.023700067 1.313251825 1.344772041 1.163258021 0.928286237 1.317790656 1.008678566 1.074551611 1.193704644 1 18.38839645 -5.52142637 24.99968915 1.093709101 1.238871153 0.190718512 0.129228887 85.25015932 1467426.654 0.036920627 0.048383076 3.01E-06 5.52142637 0.145162052 PRPS(ph)PARPK ddPTM_HeLa_A485_30min_R1 2 PRPSPARPK 9 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 PRPS(1)PARPK;PRPS(1)PARPK ; 88.187 0.0017245 139239000 110189 42950 63282 290239 152347 55815 91650 63319 93473 331650 TRUE FALSE FALSE 134700.1629 47972.62888 86692.64518 306094.0216 137178.7978 58737.38709 72068.22879 47789.91597 112232.1737 248975.7586 0.54101718 0.192679919 0.348197132 1.229412949 0.550972507 0.235916089 0.289458818 0.19194606 0.450775507 1 17.92564576 -9.99720511 5.288834066 1.000002759 0.444991528 0.246021506 0.289960099 838594181.5 523.2893033 28171.56247 0.075789476 1.01E-10 9.99720511 -0.55501123 PRPS(ph)PARPK ddPTM_HeLa_A486_30min_R1 1 PRPSPARPK 9 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 PRPS(1)PARPK 49.081 0.024095 51662000 23394 58530 32376 33778 59450 67394 65630 73338 41855 42221 TRUE FALSE FALSE 21754.20141 53891.86964 44912.85426 78636.89105 51993.22665 59079.61349 49208.67984 56640.53836 45483.0251 31648.58679 0.687367229 1.702820729 1.419110893 2.484688861 1.642829331 1.866737807 1.55484604 1.78967038 1.437126574 1 14.94985346 -4.261390534 21.22321213 1.701605527 0.687366343 0.385167305 0.362662476 0.471793148 198947.9261 0.085645358 0.478055881 5.48E-05 4.261390534 -1.014239183 PRPVS(ph)PSSLLDTAISEEAR ddPTM_HeLa_A485_30min_R1 2 PRPVSPSSLLDTAISEEAR 19 1 A0A0B4J2F2;P57059 A0A0B4J2F2 LOC102724428;SIK1 Serine/threonine-protein kinase SIK1 1 0 PRPVS(0.787)PS(0.183)S(0.03)LLDTAISEEAR;PRPVS(0.832)PS(0.142)S(0.026)LLDTAISEEAR ; 107.75 3.17E-05 40133000 20097 25184 23350 29095 28395 23660 31167 32315 27586 49516 TRUE FALSE FALSE 24567.50832 28129.04973 31988.13667 30684.38618 25567.8941 24898.80101 24507.91584 24389.69558 33122.25717 37172.57247 0.660904174 0.756715176 0.860530616 0.8254577 0.687816107 0.669816463 0.659301044 0.656120735 0.89104022 1 15.18195091 -7.955525354 4.619978848 0.998873739 0.727034739 0.641623408 0.068989808 0.12103644 5.587991828 0.075690237 0.019794989 1.11E-08 7.955525354 -0.271838999 PRPVS(ph)PSSLLDTAISEEAR ddPTM_HeLa_A486_30min_R1 3 PRPVSPSSLLDTAISEEAR 19 1 A0A0B4J2F2;P57059 A0A0B4J2F2 LOC102724428;SIK1 Serine/threonine-protein kinase SIK1 1 0 PRPVS(0.941)PS(0.048)S(0.011)LLDTAISEEAR;PRPVS(0.942)PS(0.042)S(0.016)LLDTAISEEAR;PRPVS(0.976)PS(0.021)S(0.004)LLDTAISEEAR ;; 136.56 8.28E-07 57216400 26846.7 32692.7 22590.26 15718.8 32570.3 35381.5 36723.4 34525 27406.6 38140.4 TRUE FALSE FALSE 24964.88497 30102.01139 31337.81366 36594.16078 28485.02927 31016.49026 27534.8169 26664.41118 29782.22615 28589.79559 0.873209635 1.052893551 1.096118843 1.279972803 0.996335534 1.084879749 0.963099467 0.932654838 1.041708258 1 14.80321268 -6.760544831 24.99872944 0.978753534 1.071615965 0.132359667 0.098161341 46.35310256 1295427.027 0.040687333 0.029658571 1.74E-07 6.760544831 0.092862431 PRRGAAPEPER ddPTM_HeLa_A485_30min_R1 1 PRRGAAPEPER 11 2 A0A590UK92;O14746-4;O14746-2;O14746-3;O14746 A0A590UK92 TERT Telomerase reverse transcriptase 0 0 62.633 0.034917 249780000 79672 95496 131090 89834 123660 104270 104070 97657 101410 120200 FALSE FALSE TRUE 97394.76153 106663.4265 179585.6461 94741.40395 111347.9762 109729.416 81834.59433 73706.46763 121762.0568 90236.35212 1.079329552 1.182044974 1.990169615 1.049925022 1.233959193 1.216022295 0.906891651 0.816815683 1.34936812 1 16.46142113 -6.112088436 1.402928244 1.018063857 1.367342114 0.189558231 0.27822661 0.670386634 2.68272204 0.124040427 0.126728865 7.73E-07 6.112088436 0.349278258 PRRGAAPEPER ddPTM_HeLa_A486_30min_R1 1 PRRGAAPEPER 11 2 A0A590UK92;O14746-4;O14746-2;O14746-3;O14746 A0A590UK92 TERT Telomerase reverse transcriptase 0 0 62.466 0.035384 235330000 82532 97838 84548 32415 106470 74048 87268 80851 73351 81022 FALSE FALSE TRUE 76746.933 90084.96056 117287.2499 75463.75816 93115.53981 64912.71062 65432.62337 62442.99226 79709.12374 60733.56384 1.26366589 1.483281317 1.931176807 1.242537954 1.533180896 1.068811157 1.077371708 1.028146355 1.312439427 1 15.89020641 -6.261706402 24.99571409 1.097863988 1.501029158 0.509985023 0.192686088 20.51057917 1919911.64 0.066263074 0.062104261 5.47E-07 6.261706402 0.40316517 PRT(ph)KS(ph)DPT(ph)SK ddPTM_HeLa_A485_30min_R1 1 PRTKSDPTSK 10 2 A0A0A0MSP7;Q5JV73 A0A0A0MSP7 FRMPD3 FERM and PDZ domain-containing protein 3 3 0 PRT(1)KS(1)DPT(0.553)S(0.447)K 55.401 0.0044507 0 94916 64186 72553 216850 175190 75840 148190 120770 95476 291760 TRUE FALSE FALSE 116029.7367 71691.99436 99393.37388 228695.9664 157747.4685 79810.86513 116527.9959 91150.96814 114637.1574 219029.6014 0.529744546 0.327316463 0.453789685 1.044132688 0.720210727 0.364383922 0.532019394 0.416158216 0.523386596 1 17.74076634 -10.71204583 2.606194961 1.080493142 0.546806991 0.325090001 0.196376071 30964695.97 24863376.59 16285477.14 0.054452193 1.94E-11 10.71204583 -0.533686151 PRVIREVR ddPTM_HeLa_A485_30min_R1 1 PRVIREVR 8 2 P33993;C9J8M6;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 0 5.5877 0.037884 2714500 1268.1 2897.8 3025.9 2277.8 2831.4 3671.9 2105.5 4038.9 2968.5 4015.3 FALSE FALSE TRUE 1550.18447 3236.672502 4145.306328 2402.230446 2549.495874 3864.155006 1655.642725 3048.353442 3564.250721 3014.359606 0.514266601 1.073751286 1.375186398 0.796928953 0.845783585 1.281915734 0.549251895 1.0112773 1.18242386 1 11.55763582 -4.256450442 23.91125073 1.006559409 0.514266216 0.298093149 0.229377262 378.462673 1813801.799 0.057119947 0.453957317 5.54E-05 4.256450442 -0.492293193 PS(ph)ATVGPVTVK ddPTM_HeLa_A485_30min_R1 1 PSATVGPVTVK 11 0 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 1 0 PS(0.493)AT(0.493)VGPVT(0.013)VK 50.145 0.033478 140410000 33025 87962 107750 24018 97927 62789 46804 62501 82302 30559 TRUE FALSE FALSE 40371.29732 98248.39073 147611.2089 25330.04252 88177.04404 66076.53495 36803.94305 47172.53175 98819.25648 22941.2037 1.75977241 4.282617078 6.434327109 1.104128748 3.843610179 2.880255798 1.604272537 2.056236123 4.30750094 1 14.48565347 -5.281563774 24.96891729 2.490516267 4.171277332 0.231799433 1.461200929 1192.721089 1479840.836 0.409305682 0.607972992 5.23E-06 5.281563774 1.680761065 PS(ph)DWWVVK ddPTM_HeLa_A485_30min_R1 2 PSDWWVVK 8 0 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 0 PS(1)DWWVVK;PS(1)DWWVVK ; 63.159 0.02764 584250000 339550 662520 761400 112493 600290 681360 433950 651550 678960 176237 TRUE FALSE FALSE 415081.7261 739995.9508 1043073.544 118638.2077 540523.0199 717034.956 341233.0375 491756.3409 815221.0442 132304.3593 3.137324637 5.59313355 7.883894 0.896706718 4.085451324 5.419586776 2.579151883 3.716856674 6.161709626 1 17.01350107 -5.254891916 24.99973298 3.599143152 5.543618714 0.202528151 1.910492117 935.0825335 3570352.513 0.51661863 0.868746122 5.56E-06 5.254891916 1.944475562 PS(ph)DWWVVK ddPTM_HeLa_A486_30min_R1 1 PSDWWVVK 8 0 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 0 PS(1)DWWVVK 63.159 0.02764 251790000 388340 626560 787270 32465 926330 415300 232390 379080 511310 73309 TRUE FALSE FALSE 361119.3714 576909.1037 1092122.028 75580.16069 810141.0537 364064.5085 174243.564 292771.7593 555630.7625 54951.94924 6.571547987 10.49842839 19.87412718 1.375386346 14.74271732 6.625142757 3.170835001 5.32777751 10.11121116 1 15.74588304 -6.502769771 22.39687426 5.210943793 10.61512321 0.228010152 5.00423226 315.8911396 351833.3093 1.735448374 1.506881923 3.14E-07 6.502769771 5.40417942 PS(ph)HPLAK ddPTM_HeLa_A486_30min_R1 1 PSHPLAK 7 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 0 PS(1)HPLAK 66.621 0.018114 58048000 91589 80022 47201 54183 102360 105180 126410 114330 75467 117780 TRUE FALSE FALSE 85169.08407 73680.76528 65478.49129 126140.7623 89521.05433 92203.96099 94780.88097 88299.55481 82008.54032 88287.12138 0.964682988 0.834558474 0.741653938 1.428756089 1.013976364 1.04436479 1.073552739 1.000140829 0.92888452 1 16.42991538 PS(ph)SLLGAAMPASTSAAALQEALENAGR ddPTM_HeLa_A485_30min_R1 2 PSSLLGAAMPASTSAAALQEALENAGR 27 0 O75694;E9PF10;D6RA13 O75694 NUP155 Nuclear pore complex protein Nup155 1 0 PS(0.5)S(0.5)LLGAAMPASTSAAALQEALENAGR;PS(0.5)S(0.5)LLGAAMPASTSAAALQEALENAGR ; 202.84 1.76E-28 113702000 119076 102167 88665 159634 134111 120020 185393 187974 100681 212398 TRUE FALSE FALSE 145564.0454 114114.5419 121465.8732 168354.4012 120758.4379 126304.0616 145782.271 141873.0818 120886.7532 159451.0875 0.912907197 0.715671142 0.761775132 1.055837272 0.757338441 0.792117906 0.914275803 0.889759261 0.758143172 1 17.28275441 -10.48883829 3.013999545 1.004604927 0.84000738 0.191926109 0.098639274 66002860.63 75305494.7 2518500.166 0.02419239 3.24E-11 10.48883829 -0.164597547 PS(ph)SLLGAAMPASTSAAALQEALENAGR ddPTM_HeLa_A486_30min_R1 2 PSSLLGAAMPASTSAAALQEALENAGR 27 0 O75694;E9PF10;D6RA13 O75694 NUP155 Nuclear pore complex protein Nup155 1 0 PS(0.5)S(0.5)LLGAAMPASTSAAALQEALENAGR;PS(0.5)S(0.5)LLGAAMPASTSAAALQEALENAGR ; 148.49 3.31E-09 94101000 157276 158506 101848 97614 152562 184958 228870 219010 120005 263990 TRUE FALSE FALSE 146251.7646 145945.4073 141286.2732 227250.3251 133426.2514 162139.7625 171604.3053 169146.204 130407.13 197885.1857 0.739073842 0.737525686 0.713981053 1.148394835 0.67426094 0.819362813 0.867191269 0.854769413 0.659004006 1 17.59430409 -11.49750652 2.140880854 3.23655957 0.807534643 0.163094544 0.134268119 5936594.225 390073.4679 64649748.41 0.033162367 3.18E-12 11.49750652 -2.429024928 PSAGVGGSS(ph)S(ph)S(ph)LGSGSR ddPTM_HeLa_A485_30min_R1 1 PSAGVGGSSSSLGSGSR 17 0 A0A3B3ISQ9;Q8NHY2-5;Q8NHY2-2;Q8NHY2-4;Q8NHY2 A0A3B3ISQ9 RFWD2 E3 ubiquitin-protein ligase RFWD2 3 0 PS(0.203)AGVGGS(0.557)S(0.62)S(0.62)S(0.836)LGS(0.16)GS(0.004)R 58.824 0.0023892 0 170780 358530 440540 49012 343020 294120 198140 265720 314520 82605 TRUE FALSE FALSE 208769.4218 400456.9647 603514.0784 51689.40146 308867.7244 309519.6684 155805.7703 200551.7534 377641.2791 62013.09373 3.366537762 6.457619522 9.732042736 0.833523992 4.980685623 4.991198629 2.51246569 3.234022709 6.089702292 1 15.92028524 -5.267209186 24.99941397 3.56846551 6.512621931 0.308187988 2.14346984 599.3984889 2597073.522 0.593814224 0.908430372 5.40E-06 5.267209186 2.944156421 PSMS(ph)PTPLDR ddPTM_HeLa_A485_30min_R1 6 PSMSPTPLDR 10 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 PSMS(0.806)PT(0.194)PLDR;PSMS(0.996)PT(0.004)PLDR;PSMS(0.701)PT(0.299)PLDR;PSMS(0.842)PT(0.158)PLDR;PS(0.001)MS(0.993)PT(0.006)PLDR;PS(0.033)MS(0.92)PT(0.047)PLDR ;;;;; 196.44 4.77E-11 2606600000 2441550 1636600 1676340 4230920 2571830 1819450 2505880 1956650 2041530 5130470 TRUE FALSE FALSE 2984664.374 1827986.133 2296487.924 4462044.446 2315769.575 1914713.589 1970478.267 1476778.52 2451246.345 3851538.248 0.774927881 0.474611964 0.59625214 1.158509707 0.601258361 0.497129579 0.511608126 0.38342564 0.636433079 1 21.87700332 -8.060823942 22.27920768 1.000000001 0.620387499 0.23105002 0.204654239 13339.26114 4886031.623 0.210453319 0.054338813 8.69E-09 8.060823942 -0.379612502 PSMS(ph)PTPLDR ddPTM_HeLa_A486_30min_R1 9 PSMSPTPLDR 10 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 PSMS(0.938)PT(0.062)PLDR;PSMS(0.901)PT(0.099)PLDR;PSMS(0.909)PT(0.091)PLDR;PSMS(0.785)PT(0.215)PLDR;PS(0.006)MS(0.97)PT(0.024)PLDR;PSMS(0.993)PT(0.007)PLDR;PS(0.068)MS(0.775)PT(0.157)PLDR;PSMS(0.983)PT(0.017)PLDR;PSMS(0.997)PT(0.003)PLDR ;;;;;;;; 218.15 6.97E-17 3525336000 3049421.7 3515574.1 2069923.4 1335268 3013487.9 3892981 3985808.3 3809239.6 2775250 4234971.4 TRUE FALSE FALSE 2835672.986 3236987.205 2871453.175 3108571.385 2635508.148 3412704.585 2988516.906 2941958.898 3015810.905 3174506.996 0.893264053 1.019681862 0.904535154 0.979229653 0.830210219 1.075034514 0.941411346 0.92674513 0.950009217 1 21.59810113 -6.260507016 24.99999906 0.971734813 0.932456089 0.149863885 0.061197429 228.309137 6121822.622 0.020359918 0.01923779 5.49E-07 6.260507016 -0.039278724 PSPAISVSVSAPAFYAPQK(ac)K ddPTM_HeLa_A486_30min_R1 1 PSPAISVSVSAPAFYAPQKK 20 1 Q15942;H0Y2Y8;C9IZ41 Q15942 ZYX Zyxin 0 1 PSPAISVSVSAPAFYAPQK(1)K 167.98 1.26E-14 10217000 6347.3 6658.3 3479.8 3778.7 7190.8 8123.3 9329.9 9747.9 5898.6 10405 FALSE TRUE FALSE 5902.387047 6130.672059 4827.271752 8797.004565 6288.862812 7121.129838 6995.460338 7528.515965 6409.895397 7799.520275 0.756762831 0.786031941 0.618919059 1.127890467 0.806314054 0.913021518 0.896909052 0.965253721 0.821832007 1 12.92916968 -5.242959632 24.96750307 0.923965049 0.727117352 0.510403545 0.095001603 681.9468725 921359.4599 0.024434342 0.042220724 5.72E-06 5.242959632 -0.196847697 PSS(ph)LFADLER ddPTM_HeLa_A485_30min_R1 1 PSSLFADLER 10 0 Q6ZN04;Q6ZN04-3 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 0 PS(0.005)S(0.995)LFADLER 97.163 0.0021426 4934700 20356 19395 16236 22477 21504 19464 27917 27478 18054 35341 TRUE FALSE FALSE 24884.12197 21663.07654 22242.37204 23704.8616 19362.98625 20483.10494 21952.30489 20738.97742 21677.2722 26531.1391 0.937921356 0.816515132 0.838349682 0.893473194 0.729821143 0.772040162 0.827416599 0.781684395 0.817050188 1 14.695399 PSSS(ph)PVIFAGGQDR ddPTM_HeLa_A485_30min_R1 2 PSSSPVIFAGGQDR 14 0 Q15366-2;Q15366;H3BSS4;Q15366-6;Q15366-3 Q15366-2;Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 PSS(0.011)S(0.989)PVIFAGGQDR;PSS(0.009)S(0.99)PVIFAGGQDR ; 103.32 0.00046375 325860000 398810 294926 312402 608230 424700 299877 420750 336230 354830 781020 TRUE FALSE FALSE 487523.9086 329415.0302 427972.4999 641456.0648 382415.3768 315578.096 330853.3253 253769.0653 426041.1263 586326.0876 0.831489369 0.561829052 0.729922323 1.094026137 0.652223029 0.538229669 0.564282116 0.432812168 0.726628297 1 19.16134372 -5.979207311 24.98713063 0.609633429 0.793112571 0.114497545 0.188149324 423.347244 508745.1954 0.057899875 0.065646446 1.05E-06 5.979207311 0.183479141 PSTQPRPDS(ph)WGEDNWEGLETDSR ddPTM_HeLa_A485_30min_R1 2 PSTQPRPDSWGEDNWEGLETDSR 23 1 H0YDH0;E9PPN3;E9PS17;Q96KG9-3;Q96KG9-2;Q96KG9 H0YDH0 SCYL1 N-terminal kinase-like protein 1 0 PSTQPRPDS(1)WGEDNWEGLETDSR;PSTQPRPDS(1)WGEDNWEGLETDSR ; 255.33 2.41E-61 1194930000 500510 317770 317000 674180 475280 349350 488540 388140 400290 835760 TRUE FALSE FALSE 611846.7228 354930.4373 434271.4915 711008.7463 427959.4544 367641.4258 384159.438 292948.0564 480624.5313 627420.413 0.975178222 0.565697943 0.692153909 1.133225396 0.68209361 0.585957068 0.612283933 0.466908711 0.766032665 1 19.25907294 -5.975952078 24.98571009 0.646710413 0.82324607 0.115081021 0.194664555 435.2437657 452214.7129 0.059724995 0.06771876 1.06E-06 5.975952078 0.176535657 PSTQPRPDS(ph)WGEDNWEGLETDSR ddPTM_HeLa_A486_30min_R1 2 PSTQPRPDSWGEDNWEGLETDSR 23 1 H0YDH0;E9PPN3;E9PS17;Q96KG9-3;Q96KG9-2;Q96KG9 H0YDH0 SCYL1 N-terminal kinase-like protein 1 0 PSTQPRPDS(1)WGEDNWEGLETDSR;PSTQPRPDS(1)WGEDNWEGLETDSR ; 207.99 2.41E-29 1467460000 284060 316220 247310 154289 303190 342080 386910 326880 234533 393610 TRUE FALSE FALSE 264148.8609 291161.5755 343075.0552 359192.5893 265161.0831 299877.6476 290101.0257 252456.5597 254862.5093 295047.494 0.895275731 0.986829515 1.162779085 1.217405999 0.89870644 1.016370766 0.98323501 0.855647192 0.86380164 1 18.17058768 -6.683266184 1.31772184 0.900387976 1.050193429 0.212636043 0.102586648 0.660418343 2.330069664 0.065953371 0.041080402 2.07E-07 6.683266184 0.149805453 PT(ph)T(ph)NPNT(ph)S(ph)K ddPTM_HeLa_A485_30min_R1 1 PTTNPNTSK 9 0 F8VQR7;F8VW96;Q16527 F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 4 0 PT(1)T(1)NPNT(1)S(1)K 45.433 0.022815 466150000 137970 249180 326940 62558 360390 197760 182400 243980 282260 92178 TRUE FALSE FALSE 168660.9505 278319.4334 447888.7111 65975.38513 324508.3062 208114.4078 143428.7499 184143.5225 338906.993 69199.72101 2.437306799 4.021973346 6.472406313 0.953405363 4.689445296 3.007445764 2.072678153 2.66104429 4.897519643 1 16.0784786 -5.26793134 24.99216343 2.886467994 4.281703261 0.173760688 1.535796055 979.6576093 3771398.298 0.421576357 0.642095268 5.40E-06 5.26793134 1.395235267 PT(ph)WGARPASPDRFAVSAEAENK ddPTM_HeLa_A485_30min_R1 1 PTWGARPASPDRFAVSAEAENK 22 2 G3V331;O15037 G3V331 KHNYN Protein KHNYN 1 0 PT(0.583)WGARPAS(0.417)PDRFAVSAEAENK 114.72 9.02E-05 294070000 89180 66146 63314 159080 89168 128170 144050 139620 87115 166490 TRUE FALSE FALSE 109017.7833 73881.19931 86736.48332 167770.1376 80290.12083 134880.783 113272.5407 105377.9761 104598.1814 124987.107 0.872232232 0.591110564 0.693963445 1.342299551 0.642387225 1.079157573 0.906273802 0.84311077 0.83687177 1 16.93141976 PTEHGEKT(ph)T(ph)LANEK ddPTM_HeLa_A485_30min_R1 1 PTEHGEKTTLANEK 14 1 A0A140T950;A0A0G2JIW6;E9PEI6;A0A1B0GV46 A0A140T950 DPCR1 2 0 PT(0.05)EHGEKT(0.95)T(1)LANEK 63.134 0.026268 1137000000 930000 777580 325010 925590 412020 952270 859580 1290900 811190 972980 TRUE FALSE FALSE 1136875.292 868511.217 445244.7238 976152.638 370997.8421 1002129.385 675923.7109 974304.7509 973988.3923 730433.9924 1.556438095 1.1890345 0.609561888 1.336400891 0.507914262 1.371964332 0.925372748 1.333871043 1.333437932 1 19.47839438 -9.041315403 10.44958486 1.000035186 1.110767845 0.011024099 0.327452244 0 0 0.307153792 0.074495737 9.09E-10 9.041315403 0.110732659 PTIPT(ph)EET(ph)T(ph)ISTEK ddPTM_HeLa_A486_30min_R1 1 PTIPTEETTISTEK 14 0 Q9Y493-5;Q9Y493-4;Q9Y493-3;Q9Y493-6;Q9Y493-2;Q9Y493;Q9Y493-7 Q9Y493-5 ZAN Zonadhesin 3 0 PT(0.36)IPT(0.645)EET(0.52)T(0.519)IS(0.497)T(0.458)EK 41.644 0.011399 0 193560 221020 140870 35400 183360 180410 160900 178740 185090 143590 TRUE FALSE FALSE 179992.4435 203505.5703 195418.6366 82412.98902 160361.279 158152.8485 120641.1182 138044.8039 201133.7502 107634.1294 1.672261806 1.890715997 1.815582453 0.765677109 1.48987389 1.46935595 1.120844465 1.282537469 1.868680049 1 16.71577608 PTSS(ph)PAKGPPQK ddPTM_HeLa_A485_30min_R1 2 PTSSPAKGPPQK 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 PTS(0.154)S(0.846)PAKGPPQK;PT(0.001)S(0.041)S(0.959)PAKGPPQK ; 118.52 8.67E-05 1944900000 2137100 969180 848680 4651100 1713250 1305090 2443100 1779880 1305110 5736900 TRUE FALSE FALSE 2612490.522 1082517.17 1162642.049 4905177.816 1542672.814 1373422.494 1921111.727 1343361.639 1567033.606 4306796.41 0.606597172 0.251350904 0.269955191 1.138938865 0.358194971 0.318896545 0.446065136 0.31191668 0.363851331 1 22.0381837 -10.57076719 3.912047847 1.011517276 0.449782902 0.302673388 0.249632662 525685629.7 620716.8593 54531152.97 0.063543371 2.69E-11 10.57076719 -0.561734374 PTSS(ph)PAKGPPQK ddPTM_HeLa_A486_30min_R1 1 PTSSPAKGPPQK 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 PT(0.023)S(0.148)S(0.83)PAKGPPQK 72.175 0.0053217 772000000 1190400 1309300 480750 880010 940340 1771200 1862500 1558100 936220 2270900 TRUE FALSE FALSE 1106959.107 1205546.3 666909.2749 2048707.753 822393.7889 1552687.352 1396482.8 1203354.643 1017372.303 1702251.859 0.650291026 0.708206775 0.391780612 1.203527987 0.483121099 0.912137263 0.820373785 0.706919271 0.597662619 1 20.69901308 -11.65146225 2.160072596 8.026648621 0.724944952 0.13182305 0.215649188 5806572.558 314283.6789 202060591 0.051336919 2.23E-12 11.65146225 -7.301703669 PTTQQS(ph)PQDEQEKLLDEAIQAVK ddPTM_HeLa_A485_30min_R1 2 PTTQQSPQDEQEKLLDEAIQAVK 23 1 Q96QK1;I3L4S0;A0A1W2PP10;A0A3B3ITD4 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 1 0 PT(0.004)T(0.026)QQS(0.97)PQDEQEKLLDEAIQAVK;PT(0.125)T(0.125)QQS(0.749)PQDEQEKLLDEAIQAVK ; 139.16 2.55E-07 67758000 52459 32873 21014.2 123706 57014 57161 114067 117933 37915 158630 TRUE FALSE FALSE 64128.32357 36717.21139 28788.22705 130463.7455 51337.48597 60153.86157 89695.65361 89009.74684 45524.19272 119086.4604 0.538502222 0.30832398 0.241742235 1.095538025 0.43109423 0.505127631 0.753197747 0.747438009 0.382278494 1 16.86164987 -14 0.066647859 2.380895897 0.027248556 0.239645598 0.239264021 507.7218591 2.443638255 112.4402301 15.40883293 1.00E-14 14 -2.353647341 PTTQQS(ph)PQDEQEKLLDEAIQAVK ddPTM_HeLa_A486_30min_R1 3 PTTQQSPQDEQEKLLDEAIQAVK 23 1 Q96QK1;I3L4S0;A0A1W2PP10;A0A3B3ITD4 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 1 0 PT(0.075)T(0.075)QQS(0.85)PQDEQEKLLDEAIQAVK;PTTQQS(1)PQDEQEKLLDEAIQAVK;PT(0.038)T(0.038)QQS(0.923)PQDEQEKLLDEAIQAVK ;; 162.44 1.51E-14 130602000 134715 122796 44583 125574 125155 179448 265802 253306 89066 306672 TRUE FALSE FALSE 125272.1742 113065.1977 61846.73157 292342.6182 109456.8929 157309.5303 199295.5282 195633.7534 96786.31259 229879.3351 0.544947523 0.491845853 0.269039979 1.271722045 0.476149336 0.684313491 0.866957128 0.851028011 0.42103094 1 17.81051726 PVEEVKYMKNGAEEEQK ddPTM_HeLa_A485_30min_R1 1 PVEEVKYMKNGAEEEQK 17 2 A0A3B3ITU3;Q9H246 A0A3B3ITU3 C1orf21 Uncharacterized protein C1orf21 0 0 54.234 0.028177 85937000 25440 13164 6012.1 81542 14071 25490 38419 37898 8101 69477 FALSE FALSE TRUE 31099.04023 14703.41529 8236.225974 85996.43298 12670.04183 26824.61698 30210.4668 28603.45608 9726.796393 52157.66253 0.596250651 0.281903264 0.157910182 1.648778508 0.24291813 0.51429868 0.579214354 0.548403718 0.186488349 1 15.6705916 -11.20124091 2.253029755 2.316563049 0.536527191 0.10729735 0.407436494 21082848.55 4185184.315 141461984.8 0.102438664 6.29E-12 11.20124091 -1.780035857 PVFSNQFLLENAAY(ph)LDYES(ph)T(ph)KEYAIK ddPTM_HeLa_A486_30min_R1 1 PVFSNQFLLENAAYLDYESTKEYAIK 26 1 Q9BZA8-3;Q9BZA8-2;Q9BZA8-4;Q9BZA8 Q9BZA8-3 PCDH11Y Protocadherin-11 Y-linked 3 0 PVFSNQFLLENAAY(0.534)LDY(0.534)ES(0.654)T(0.654)KEY(0.623)AIK 42.322 0.035645 1004500000 182350 235620 91601 446080 163890 279550 318810 306480 129970 584770 TRUE FALSE FALSE 169568.2067 216948.6131 127071.3604 1038496.784 143333.388 245061.9633 239040.366 236701.1944 141235.9042 438339.7858 0.386841925 0.494932516 0.289892372 2.369159308 0.326991509 0.559068493 0.54533121 0.539994776 0.322206445 1 18.74169011 PVQDTDS(ph)PR ddPTM_HeLa_A485_30min_R1 2 PVQDTDSPR 9 0 Q9UN70-2;Q9UN70 Q9UN70-2 PCDHGC3 Protocadherin gamma-C3 1 0 PVQDT(0.001)DS(0.999)PR;PVQDT(0.005)DS(0.995)PR ; 69.276 0.015427 1690040000 1567300 976200 1252360 2931800 1759510 897130 1524800 963110 1279940 3399300 TRUE FALSE FALSE 1915940.478 1090358.098 1715660.079 3091956.81 1584327.006 944102.3396 1199014.024 726905.7624 1536812.218 2551917.069 0.750784773 0.427270193 0.672302443 1.211621195 0.620837967 0.36995808 0.46984835 0.284846938 0.602218715 1 21.28315002 -3.960882319 14.72449913 0.611298275 1.275861524 0.014304858 0.270935708 8773029.599 100516323.3 0.071501148 151449133.8 0.000109425 3.960882319 0.664563249 PVQDTDS(ph)PR ddPTM_HeLa_A486_30min_R1 2 PVQDTDSPR 9 0 Q9UN70-2;Q9UN70 Q9UN70-2 PCDHGC3 Protocadherin gamma-C3 1 0 PVQDTDS(1)PR;PVQDT(0.004)DS(0.996)PR ; 70.552 0.014569 2133600000 949150 2362800 1241500 811950 1766570 2306600 2353360 2181660 1727100 2081310 TRUE FALSE FALSE 882619.4864 2175563.123 1722242.049 1890260.634 1544990.318 2022035.144 1764524.437 1684943.643 1876806.419 1560136.429 0.565732246 1.394469793 1.103904772 1.211599575 0.990291804 1.296063028 1.131006497 1.079997628 1.202975832 1 20.57324076 -4.246594812 24.80011506 1.157618436 0.56573178 0.687759087 0.1194558 1323.465638 2211012.662 0.027654766 0.613621458 5.67E-05 4.246594812 -0.591886656 PVSMVPNIPGIPGPPVNSSGS(ph)ISPSGHPIPSEAK ddPTM_HeLa_A485_30min_R1 1 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAK 34 0 P17544;K7ELQ4;P17544-2;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 PVSMVPNIPGIPGPPVNS(0.011)S(0.029)GS(0.468)IS(0.384)PS(0.104)GHPIPS(0.003)EAK 80.505 0.00033813 84781000 100320 60651 49772 107560 93106 69790 94649 82344 63007 160060 TRUE FALSE FALSE 122635.8379 67743.60686 68184.73399 113435.7304 83836.03973 73444.09648 74426.46794 62149.00489 75651.92697 120159.9877 1.020604614 0.56377841 0.567449575 0.944039132 0.697703465 0.611219241 0.61939477 0.517218802 0.629593332 1 16.87459704 -4.250468027 24.439453 0.669006726 1.020604891 0.297052475 0.154208778 1462.587115 3257931.279 0.037887992 0.540765383 5.62E-05 4.250468027 0.351598165 PVSMVPNIPGIPGPPVNSSGSIS(ph)PSGHPIPSEAK ddPTM_HeLa_A486_30min_R1 1 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAK 34 0 P17544;K7ELQ4;P17544-2;P17544-1;P17544-3 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 PVSMVPNIPGIPGPPVNS(0.048)S(0.048)GS(0.222)IS(0.585)PS(0.096)GHPIPS(0.002)EAK 149.44 1.13E-09 90929000 107260 123680 65145 17159 112710 150460 165390 135230 109720 104510 TRUE FALSE FALSE 99741.62789 113879.1464 90370.88864 39947.01917 98572.86082 131897.775 124007.6727 104441.0811 119230.6179 78340.01575 1.273188765 1.453652329 1.15357251 0.509918447 1.258269607 1.683657754 1.582941636 1.333176666 1.52196316 1 16.2574618 -6.003577726 24.99999991 1.456847991 1.096650601 0.224725603 0.283142654 220.0692312 1537790.463 0.092807088 0.103076821 9.92E-07 6.003577726 -0.360197391 PVSSAASVYAGAGGS(ph)GSR ddPTM_HeLa_A485_30min_R1 7 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 PVSSAASVYAGAGGS(0.995)GS(0.005)R;PVSSAASVYAGAGGS(0.956)GS(0.044)R;PVSSAASVYAGAGGS(0.891)GS(0.109)R;PVSSAASVYAGAGGS(0.5)GS(0.5)R;PVSSAASVYAGAGGS(0.958)GS(0.042)R;PVSSAASVYAGAGGS(0.961)GS(0.039)R;PVSSAASVYAGAGGS(0.96)GS(0.04)R ;;;;;; 389.33 2.09E-145 4404480000 1102619 783408 835388 1645350 1143610 832224 1166000 979335 1010472 2042420 TRUE FALSE FALSE 1347892.793 875020.7509 1144432.785 1735231.304 1029748.173 875797.9618 916874.5747 739151.5557 1213264.462 1533282.282 0.879089786 0.570684708 0.746394058 1.131710269 0.671597256 0.571191601 0.597981589 0.482071413 0.791285777 1 20.5481919 -5.96872291 24.99888049 0.647245907 0.819001414 0.108348931 0.186817353 373.8009208 298766.7901 0.05780797 0.06554758 1.07E-06 5.96872291 0.171755507 PVSSAASVYAGAGGS(ph)GSR ddPTM_HeLa_A486_30min_R1 6 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 PVSSAASVYAGAGGS(0.949)GS(0.051)R;PVSSAAS(0.003)VYAGAGGS(0.954)GS(0.043)R;PVSSAASVYAGAGGS(0.997)GS(0.003)R;PVSSAASVYAGAGGS(0.974)GS(0.026)R;PVSSAASVYAGAGGS(1)GSR;PVSSAASVYAGAGGS(0.961)GS(0.039)R ;;;;; 381.42 6.92E-131 5783750000 1164720 1347780 927929 614044 1188560 1382290 1560530 1524430 1084867 1510930 TRUE FALSE FALSE 1083079.143 1240977.004 1287247.96 1429525.464 1039479.722 1211757.114 1170068.888 1177350.567 1178904.145 1132583.293 0.95629094 1.095704847 1.136559198 1.262181309 0.917795387 1.069905517 1.033097429 1.039526694 1.040898406 1 20.11118572 -5.780045115 24.99991994 1.022310044 1.113176742 0.260270937 0.078811345 370.3872709 497675.1576 0.025075112 0.02848282 1.66E-06 5.780045115 0.090866698 PVSVAGS(ph)PLSPGPVR ddPTM_HeLa_A485_30min_R1 1 PVSVAGSPLSPGPVR 15 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 PVS(0.001)VAGS(0.989)PLS(0.01)PGPVR 73.386 0.0081126 115980000 127040 125090 111530 176320 140640 97551 132450 132650 130000 234680 TRUE FALSE FALSE 155299.6097 139718.1874 152789.5882 185951.9151 126637.3878 102658.6195 104150.9755 100117.3795 156089.8076 176178.595 0.88148966 0.793048596 0.867242631 1.055473936 0.718801213 0.582696323 0.591167023 0.568272096 0.885974869 1 17.42667913 -5.943073081 12.55572415 0.685851387 0.889279753 0.236941187 0.144774781 1.115812106 243.8298428 0.044101835 0.050011275 1.14E-06 5.943073081 0.203428366 PVSVAGS(ph)PLSPGPVR ddPTM_HeLa_A486_30min_R1 2 PVSVAGSPLSPGPVR 15 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 PVSVAGS(0.994)PLS(0.006)PGPVR;PVSVAGS(0.997)PLS(0.003)PGPVR ; 175.6 1.17E-12 307100000 277260 301970 229090 124530 296610 316920 338850 331150 239250 369000 TRUE FALSE FALSE 257825.5058 278040.7974 317799.7832 289912.1334 259406.408 277821.6326 254066.146 255754.374 259988.3826 276599.9982 0.932124033 1.005208963 1.148950778 1.048127749 0.937839514 1.00441661 0.91853271 0.92463621 0.939943544 1 18.07744162 -5.759464819 24.99807889 0.951184559 1.039813892 0.317406097 0.056627377 62.11465219 786365.1796 0.018055342 0.022150175 1.74E-06 5.759464819 0.088629333 PVVDPSRITR ddPTM_HeLa_A486_30min_R1 2 PVVDPSRITR 10 1 H0YL47;H0YK38;H0YM99;H0YK74;H0YK91;H0YLZ9;H0YMS4;H0YL16;Q9NQU5-2;Q9NQU5 H0YL47 PAK6 Serine/threonine-protein kinase PAK 6 0 0 ; ; 67.704 0.019857 857960000 88246 95659 71467 27847 82549 67211 82417 74739 71221 70796 FALSE FALSE TRUE 82060.4111 88078.63246 99140.93635 64829.22331 72194.93468 58919.19017 61795.39488 57722.56124 77394.49362 53068.2208 1.546319245 1.659724617 1.868179013 1.221620441 1.36041747 1.110253732 1.164451982 1.087704852 1.458396239 1 15.69556056 -5.277088262 23.92351992 1.205473365 1.688239298 0.708303041 0.144363899 232.8210532 355929.0219 0.039850755 0.059378048 5.28E-06 5.277088262 0.482765932 PWIS(ph)LPR ddPTM_HeLa_A485_30min_R1 9 PWISLPR 7 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 1 0 PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR ;;;;;;;; 73.248 0.013448 11678598000 1863403 7207880 10527850 426691 6511780 4651080 3047020 4052560 5883270 837974 TRUE FALSE FALSE 2277910.569 8050778.866 14422539.82 450000.0489 5863444.319 4894603.357 2395999.285 3058663.306 7063988.324 629082.5036 3.621004488 12.79765185 22.92630892 0.715327555 9.320628512 7.780542821 3.808720274 4.862102011 11.22903321 1 19.26288971 -5.288369914 24.99841037 5.871711183 13.08326078 0.295272297 5.351058275 940.7557127 873259.3321 1.502974426 2.229926724 5.15E-06 5.288369914 7.211549596 PWIS(ph)LPR ddPTM_HeLa_A486_30min_R1 6 PWISLPR 7 0 P62701;C9JEH7;P22090;Q8TD47 P62701 RPS4X;RPS4Y1;RPS4Y2 "40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1;40S ribosomal protein S4, Y isoform 2" 1 0 PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR;PWIS(1)LPR ;;;;; 83.206 0.0073227 6840350000 2383320 4252730 8691900 108134 7146160 1465340 1204100 2125620 4169530 305243 TRUE FALSE FALSE 2216261.575 3915728.187 12057636.46 251741.4168 6249821.978 1284561.249 902821.4443 1641662.728 4530948.218 228808.166 9.686112232 17.11358583 52.69757923 1.100229162 27.31468062 5.614140753 3.945757095 7.174843261 19.8023886 1 17.80377902 -6.26998249 24.21880009 7.670748516 21.92488644 0.216224533 13.38894262 679.1452172 1925297.05 4.66133899 4.178734667 5.37E-07 6.26998249 14.25413792 PY(ph)LVNCVR ddPTM_HeLa_A485_30min_R1 1 PYLVNCVR 8 0 Q14147 Q14147 DHX34 Probable ATP-dependent RNA helicase DHX34 1 0 PY(1)LVNCVR 43.246 0.013068 0 108950 172320 180680 114110 173830 139720 145590 175590 143210 155140 TRUE FALSE FALSE 133185.5516 192471.325 247521.0507 120343.5404 156522.8748 147035.5232 114483.5071 132526.2772 171950.9334 116466.4531 1.143552912 1.652590251 2.125256192 1.033289304 1.343930983 1.262471031 0.982974102 1.137892274 1.476398815 1 16.82955494 -5.293465813 24.99918452 1.184922393 1.641679154 0.392424197 0.264298258 657.9443458 513576.6473 0.075044548 0.11131927 5.09E-06 5.293465813 0.456756761 PYECSDCGKS(ph)FTSK ddPTM_HeLa_A485_30min_R1 1 PYECSDCGKSFTSK 14 1 E9PQH3;A0A0C4DFY4;Q6P3V2;Q52M93 E9PQH3 ZNF585B;ZNF585A Zinc finger protein 585A;Zinc finger protein 585B 1 0 PYECS(0.001)DCGKS(0.499)FT(0.499)S(0.001)K 62.861 0.013595 483780000 59184 191320 187400 11730 191280 146230 110570 193690 141290 22734 TRUE FALSE FALSE 72349.27662 213693.2097 256727.0584 12370.7802 172235.4916 153886.3767 86945.81623 146187.2238 169645.607 17066.83219 4.239174313 12.52096507 15.04245519 0.724843372 10.09182546 9.016692435 5.094432011 8.565574571 9.940075882 1 14.05890768 -5.242988653 24.99982844 6.877868346 10.79287391 0.177224548 4.083081009 1544.196186 2092307.276 1.082208347 1.870011011 5.71E-06 5.242988653 3.915005559 QAACIWLLSLVR ddPTM_HeLa_A485_30min_R1 1 QAACIWLLSLVR 12 0 J3KN16;Q5VYK3 J3KN16 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog 0 0 97.214 0.014489 4191500 1632.6 2862.5 2281.2 2178.8 3826.1 2014.2 3718 3705.9 2056.8 3386.4 FALSE FALSE TRUE 1995.766238 3197.244475 3125.110809 2297.822327 3445.16005 2119.660397 2923.618927 2797.022214 2469.580894 2542.232802 0.785044641 1.257652121 1.229277982 0.903859916 1.355170953 0.833779029 1.150020141 1.100222691 0.971422008 1 11.31188043 -6.286974088 24.99896824 1.026035957 1.1102116 0.06546897 0.174852577 2644.38588 2588895.61 0.059297753 0.052319043 5.16E-07 6.286974088 0.084175642 QAAS(ph)PLEPK ddPTM_HeLa_A485_30min_R1 3 QAASPLEPK 9 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QAAS(1)PLEPK;QAAS(1)PLEPK;QAAS(1)PLEPK ;; 121.04 0.00041265 1537260000 2215340 2269950 1638970 2962630 2624600 2688330 3699600 3835900 1951490 3908800 TRUE FALSE FALSE 2708134.74 2535400.907 2245293.206 3124470.975 2363285.608 2829086.802 2909150.237 2895139.511 2343136.143 2934408.096 0.922889609 0.864024643 0.765160514 1.064770432 0.805370463 0.964108164 0.99139252 0.986617885 0.798503843 1 21.48463809 -5.245982553 24.99329648 0.940824131 0.852024911 0.195734421 0.086818685 1415.91238 2289491.287 0.022879358 0.039442808 5.68E-06 5.245982553 -0.088799221 QAAS(ph)PLEPK ddPTM_HeLa_A486_30min_R1 1 QAASPLEPK 9 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QAAS(1)PLEPK 101.72 0.0016499 548160000 685950 623580 349090 313420 640530 763580 893820 857330 498020 1072400 TRUE FALSE FALSE 637868.4472 574165.2498 484266.997 729657.5994 560188.7547 669377.2631 670176.7821 662134.6744 541188.7746 803864.0598 0.793502881 0.714256649 0.602423993 0.907687799 0.696870009 0.832699578 0.833694172 0.823689859 0.673234197 1 19.61659202 -14 0.218323846 2.146765431 0.736856871 0.380077714 0.088383925 160.9447893 1.610027326 81.38834651 0.171314787 1.00E-14 14 -1.40990856 QADLYISEGLHPR ddPTM_HeLa_A485_30min_R1 1 QADLYISEGLHPR 13 0 P40227;Q92526-3;Q92526 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 0 80.632 0.01104 21459000 13112 14668 16631 13102 23644 15803 19251 20061 16449 19285 FALSE FALSE TRUE 16028.71916 16383.29501 22783.49897 13817.72908 21289.92034 16630.42064 15137.86658 15141.0083 19750.16342 14477.60441 1.10713891 1.131630243 1.573706417 0.954420959 1.470541654 1.148699755 1.045605761 1.045822766 1.364187255 1 13.82153528 -6.503767143 24.76692423 1.114783945 1.249565678 0.102277023 0.189768487 1613.112419 2090455.303 0.065020385 0.056427555 3.13E-07 6.503767143 0.134781733 QADPQPQAWPPPDS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 QADPQPQAWPPPDSPVR 17 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 QADPQPQAWPPPDS(1)PVR;QADPQPQAWPPPDS(1)PVR ; 209.45 1.99E-25 139800000 86959 97481 99823 120858 110274 84506 98022 102863 101109 171090 TRUE FALSE FALSE 106302.7295 108880.555 136751.6817 127460.1665 99294.73336 88930.60349 77078.79893 77635.68797 121400.6489 128440.4117 0.827642392 0.847712597 1.064709151 0.992368094 0.773080155 0.692388029 0.600113297 0.604449074 0.945190437 1 16.97073967 -5.867762897 5.428337857 0.733479386 0.935648173 0.232334842 0.138425998 0.258628936 11.44591862 0.043838258 0.050159213 1.36E-06 5.867762897 0.202168788 QADPQPQAWPPPDS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 QADPQPQAWPPPDSPVR 17 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 QADPQPQAWPPPDS(1)PVR;QADPQPQAWPPPDS(1)PVR ; 189.77 6.54E-18 222037000 141652 160239 131509 39636 146235 145549 147800 143080 149441 143930 TRUE FALSE FALSE 131722.9263 147541.0781 182432.8067 92274.61109 127892.8427 127592.6442 110818.8767 110503.8074 162394.6662 107888.9912 1.220911651 1.367526718 1.690930694 0.855273648 1.185411424 1.182628949 1.027156483 1.024236173 1.505201452 1 16.71918814 -5.262653639 24.99965448 1.114964899 1.42056338 0.357526107 0.193441587 122.4251413 2520557.558 0.052930891 0.083697473 5.46E-06 5.262653639 0.305598481 QADPQPQAWPPPDS(ph)PVRVDTVR ddPTM_HeLa_A485_30min_R1 2 QADPQPQAWPPPDSPVRVDTVR 22 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 QADPQPQAWPPPDS(1)PVRVDTVR;QADPQPQAWPPPDS(1)PVRVDTVR ; 148.1 7.41E-10 4662900000 585930 957310 895190 656480 1156860 866620 1024710 1200390 696270 861630 TRUE FALSE FALSE 716268.1071 1069259.077 1226358.033 692341.8401 1041678.956 911994.8832 805772.3374 905992.4704 836005.0024 646841.4981 1.107331717 1.653046504 1.895917372 1.070342336 1.61040836 1.409920183 1.245702911 1.40064061 1.292441819 1 19.30305271 -8.438450984 0.368605594 0.947921065 1.507086864 0.241559558 0.23597077 3.432258266 0.967891882 0.593690273 0.210100149 3.64E-09 8.438450984 0.559165799 QADPQPQAWPPPDS(ph)PVRVDTVR ddPTM_HeLa_A486_30min_R1 4 QADPQPQAWPPPDSPVRVDTVR 22 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 QADPQPQAWPPPDS(1)PVRVDTVR;QADPQPQAWPPPDS(1)PVRVDTVR;QADPQPQAWPPPDS(1)PVRVDTVR;QADPQPQAWPPPDS(1)PVRVDTVR ;;; 153.97 3.74E-10 5384800000 1366160 1321810 1180920 432675 1681890 1287150 1403880 1547610 1255150 1393300 TRUE FALSE FALSE 1270399.239 1217064.962 1638203.85 1007289.266 1470931.673 1128354.52 1052614.375 1195252.987 1363947.413 1044408.611 1.216381429 1.165314943 1.568546862 0.964458982 1.408387156 1.0803765 1.007856852 1.144430422 1.305951902 1 19.99425483 -6.299995037 24.70783405 1.110508362 1.259310586 0.180560006 0.166875023 903.1696921 578780.3565 0.057039387 0.05030481 5.01E-07 6.299995037 0.148802224 QAEEECAHRGS(ph)PLPK ddPTM_HeLa_A485_30min_R1 3 QAEEECAHRGSPLPK 15 1 F2Z2A4;H7C1J2;H7C1M5;Q9H147 F2Z2A4 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 1 0 QAEEECAHRGS(1)PLPK;QAEEECAHRGS(1)PLPK;QAEEECAHRGS(1)PLPK ;; 193.85 9.11E-19 2725500000 1138950 1010110 817630 1282710 1378190 1171830 1680700 1539080 1030980 1630390 TRUE FALSE FALSE 1392305.498 1128233.578 1120105.361 1352781.199 1240972.564 1233185.207 1321604.715 1161618.217 1237888.229 1223963.778 1.137538155 0.921786737 0.915145841 1.105246106 1.013896479 1.00753407 1.079774368 0.949062577 1.011376522 1 20.22312943 -4.236414342 23.97643439 1.002566489 1.137538447 0.333239654 0.058113526 5779.615133 5537291.312 0.014887975 0.964812916 5.80E-05 4.236414342 0.134971958 QAEEECAHRGS(ph)PLPK ddPTM_HeLa_A486_30min_R1 3 QAEEECAHRGSPLPK 15 1 F2Z2A4;H7C1J2;H7C1M5;Q9H147 F2Z2A4 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 1 0 QAEEECAHRGS(1)PLPK;QAEEECAHRGS(1)PLPK;QAEEECAHRGS(1)PLPK ;; 168.78 1.95E-12 2691000000 2112140 2160730 1350310 997270 2239940 2328910 2917730 2696860 1860230 2876490 TRUE FALSE FALSE 1964089.893 1989505.886 1873186.195 2321694.959 1958985.839 2041592.763 2187683.093 2082843.85 2021476.234 2156198.181 0.91090416 0.92269157 0.86874491 1.076753973 0.908537005 0.946848384 1.014602049 0.965979782 0.937518755 1 21.04005835 -5.197060464 24.99999729 0.974446666 0.902971344 0.37585432 0.045712847 236.1510921 91702.83998 0.012067072 0.02090078 6.35E-06 5.197060464 -0.071475322 QAEVANQETKEDLPAENGETKTEES(ph)PAS(ph)DEAGEK ddPTM_HeLa_A486_30min_R1 1 QAEVANQETKEDLPAENGETKTEESPASDEAGEK 34 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 2 0 QAEVANQETKEDLPAENGET(0.002)KT(0.016)EES(0.982)PAS(1)DEAGEK 150.08 9.40E-10 87844000 75368 56598 24258 92907 52435 100040 155430 143130 50294 226700 TRUE FALSE FALSE 70085.0924 52112.96835 33651.34725 216292.1913 45858.11336 87698.08193 116539.77 110542.4235 54653.52441 169932.8444 0.412428172 0.306668017 0.198027329 1.272809809 0.269860212 0.516074937 0.685798972 0.650506521 0.32161837 1 17.3746052 -14 0.158964571 2.634847005 0.402234134 0.186684768 0.297130661 240.5883662 2.203062385 125.9528589 1.297260129 1.00E-14 14 -2.232612872 QAEVANQETKEDLPAENGETKTEES(ph)PASDEAGEK ddPTM_HeLa_A486_30min_R1 1 QAEVANQETKEDLPAENGETKTEESPASDEAGEK 34 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 QAEVANQETKEDLPAENGET(0.001)KT(0.005)EES(0.905)PAS(0.089)DEAGEK 169.32 8.42E-15 783310000 130400 94819 33618 160370 90432 169170 293670 245160 86894 339750 TRUE FALSE FALSE 121259.6334 87305.19712 46635.78992 373349.4647 79089.17532 148299.5254 220190.6599 189342.4198 94426.04188 254674.3886 0.476135956 0.34281106 0.183119277 1.465987478 0.310550173 0.582310323 0.864596794 0.743468634 0.370771645 1 17.95829436 QAEVANQETKEDLPAENGETKTEESPAS(ph)DEAGEK ddPTM_HeLa_A486_30min_R1 1 QAEVANQETKEDLPAENGETKTEESPASDEAGEK 34 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 QAEVANQETKEDLPAENGETKT(0.001)EES(0.002)PAS(0.997)DEAGEK 140.41 1.07E-07 233310000 106250 75224 27215 151950 85620 150850 259220 246790 78409 318560 TRUE FALSE FALSE 98802.42368 69262.97628 37753.37684 353747.2791 74880.74123 132239.6607 194360.4143 190601.3044 85205.55525 238790.5025 0.413761949 0.2900575 0.158102506 1.481412683 0.313583415 0.553789449 0.813936954 0.798194662 0.356821374 1 17.86538593 QAGAPGGSSGSGGS(ph)PELSALR ddPTM_HeLa_A485_30min_R1 1 QAGAPGGSSGSGGSPELSALR 21 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 0 QAGAPGGS(0.203)S(0.051)GS(0.147)GGS(0.593)PELS(0.005)ALR 65.423 0.010409 118650000 28818 45789 41609 50784 55803 45861 61433 64122 40315 66449 TRUE FALSE FALSE 35228.46468 51143.62524 57001.90059 53558.20133 50247.05738 48262.21105 48307.33769 48395.97896 48405.85071 49884.4872 0.706200798 1.025241074 1.14267789 1.07364442 1.007268195 0.967479346 0.968383969 0.970160899 0.970358791 1 15.60630362 -4.260361157 24.6009639 1.015789333 0.706200674 0.748742527 0.053466044 41.40798077 944616.2421 0.015385355 0.091343893 5.49E-05 4.260361157 -0.309588659 QAGGFLGPPPPSGKFS(ph) ddPTM_HeLa_A485_30min_R1 1 QAGGFLGPPPPSGKFS 16 1 J3QQY2;Q9UM00-1;Q9UM00-2;Q9UM00 J3QQY2 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 1 0 QAGGFLGPPPPS(0.137)GKFS(0.863) 75.682 0.01183 0 242560 215480 151990 258750 201730 238820 344990 412460 192970 500560 TRUE FALSE FALSE 296516.6352 240678.5116 208217.4258 272884.8573 181645.0529 251324.2459 271280.0682 311303.5383 231697.309 375779.6041 0.789070593 0.640477846 0.554094537 0.726183258 0.483381884 0.668807575 0.721912699 0.828420529 0.61657766 1 18.51952724 -9.228810682 0.433722315 1.058682531 0.640064146 0.504698785 0.098326003 4.813676651 1.010808347 0.566429015 0.060034892 5.90E-10 9.228810682 -0.418618385 QAGIGGEPAAAGAGCS(ph)PRPK ddPTM_HeLa_A485_30min_R1 3 QAGIGGEPAAAGAGCSPRPK 20 1 J3QQY0;J3KSZ8;Q68DK7 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK ;; 174.49 3.26E-14 802330000 773108 731538 635914 1069374 1052622 771468 1154768 1159894 699577 1329934 TRUE FALSE FALSE 945083.2074 817085.0056 871165.0512 1127791.194 947819.2577 811860.8716 908042.3832 875428.1779 839975.687 998405.9294 0.946592142 0.818389576 0.872555967 1.129591843 0.949332561 0.813157101 0.909492178 0.8768259 0.841316805 1 19.92926698 QAGIGGEPAAAGAGCS(ph)PRPK ddPTM_HeLa_A486_30min_R1 2 QAGIGGEPAAAGAGCSPRPK 20 1 J3QQY0;J3KSZ8;Q68DK7 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK ; 196.06 1.82E-20 761430000 848750 995890 574760 459130 936160 1015590 1263580 1225390 799880 1268120 TRUE FALSE FALSE 789257.0079 916972.0494 797322.4646 1068877.843 818738.0835 890296.8316 947418.9192 946395.4471 869214.2424 950574.4979 0.830294742 0.964650379 0.838779566 1.124454575 0.861308698 0.936588172 0.996680346 0.995603658 0.914409385 1 19.85844017 -3.099899447 0.91159626 0.965280158 1.99E-11 0.206536553 0.076253504 24.60099174 3.120639256 0.024211052 38.34348844 0.000794512 3.099899447 -0.965280158 QAHDLS(ph)PAAESSSTFSFSGR ddPTM_HeLa_A485_30min_R1 6 QAHDLSPAAESSSTFSFSGR 20 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(0.997)PAAES(0.003)SSTFSFSGR ;;;;; 264.66 5.83E-59 5123070000 1252721 2022450 1731404 1234975 1802080 1765181 1810443 2232063 1473862 1731405 TRUE FALSE FALSE 1531384.465 2258957.935 2371922.389 1302438.557 1622658.588 1857603.148 1423627.063 1684646.05 1769652.584 1299797.598 1.178171484 1.737930535 1.824839801 1.002031824 1.248393281 1.429148008 1.095268268 1.296083369 1.361483194 1 20.30985556 -5.262111761 24.99999968 1.2235882 1.596075595 0.405482932 0.207312675 60.33966316 2243542.848 0.057045836 0.090583518 5.47E-06 5.262111761 0.372487395 QAHDLS(ph)PAAESSSTFSFSGR ddPTM_HeLa_A486_30min_R1 3 QAHDLSPAAESSSTFSFSGR 20 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 QAHDLS(0.99)PAAES(0.008)S(0.001)STFSFSGR;QAHDLS(0.997)PAAES(0.003)SSTFSFSGR;QAHDLS(0.874)PAAES(0.125)S(0.001)STFSFSGR ;; 278.57 1.72E-72 1815650000 815490 861970 772930 199504 952420 696820 747070 807450 721970 794330 TRUE FALSE FALSE 758328.3622 793664.358 1072229.196 464455.3944 832958.6026 610853.4331 560145.1843 623611.2615 784550.9409 595424.5978 1.273592601 1.332938479 1.800780821 0.780040657 1.398932133 1.025912324 0.94074915 1.047338763 1.317632734 1 19.1835593 -5.265569349 24.99959143 1.081031245 1.455487412 0.424529866 0.21104185 346.5113078 2097509.129 0.05781486 0.089326619 5.43E-06 5.265569349 0.374456167 QAHLCVLASNCDEPMYVK ddPTM_HeLa_A485_30min_R1 2 QAHLCVLASNCDEPMYVK 18 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ; ; 245.02 1.87E-37 58089000 16333.1 18636.9 19451.5 18736.9 28830 20163.5 25130.1 26040.3 16684.4 30269 FALSE FALSE TRUE 19966.34175 20816.32334 26647.41929 19760.4494 25959.58397 21219.22968 19760.84884 19653.8756 20032.80604 22723.49536 0.878665075 0.916070482 1.172681353 0.869604306 1.142411568 0.933801308 0.869621884 0.864914279 0.88158999 1 14.47189715 -6.514189074 24.45151891 0.894051113 0.998643366 0.155522223 0.100821058 524.1243702 1474822.64 0.036277175 0.029591782 3.06E-07 6.514189074 0.104592254 QAHLCVLASNCDEPMYVK ddPTM_HeLa_A486_30min_R1 2 QAHLCVLASNCDEPMYVK 18 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ; ; 243.29 2.73E-37 50868000 25945 39701 33065 11774.8 50714 41406 49259 50230 35598 35367 FALSE FALSE TRUE 24126.38948 36554.94817 45868.65351 27412.32947 44352.97723 36297.74871 36933.87719 38793.72551 38683.6633 26510.873 0.910056394 1.378866255 1.730182688 1.034003274 1.673010815 1.369164595 1.393159599 1.46331377 1.459162182 1 14.69429656 -4.26760118 5.629385813 1.412668078 0.894704928 0.292370499 0.221255928 0.151016527 19.70852695 0.050548377 0.300199883 5.40E-05 4.26760118 -0.517963149 QAIELS(ph)PDNQYVK ddPTM_HeLa_A486_30min_R1 2 QAIELSPDNQYVK 13 0 O14879 O14879 IFIT3 Interferon-induced protein with tetratricopeptide repeats 3 1 0 QAIELS(1)PDNQYVK;QAIELS(1)PDNQYVK ; 215.93 1.02E-22 126460000 367750 399580 272230 141305 388820 398720 429300 428860 333930 401690 TRUE FALSE FALSE 341972.6241 367915.8256 377644.7466 328965.1812 340050.57 349529.9803 321884.5993 331217.9399 362875.3213 301104.2094 1.135728473 1.221888682 1.254199492 1.092529333 1.129345122 1.16082728 1.069013947 1.100010991 1.205148616 1 18.19990335 -14 0.084547347 0.53213293 1.283047696 0.408068672 0.055985008 235.4889872 1.395399161 20.45620108 1.672691661 1.00E-14 14 0.750914766 QALDS(ph)EEEEEDVAAK ddPTM_HeLa_A485_30min_R1 1 QALDSEEEEEDVAAK 15 0 Q8NC44;H7C3D5 Q8NC44 FAM134A Protein FAM134A 1 0 QALDS(1)EEEEEDVAAK 159.26 3.69E-09 108620000 56354 38187 27251 67128 38254 39116 55013 67718 38377 88643 TRUE FALSE FALSE 68889.75288 42652.63747 37332.27891 70795.03266 34445.29744 41164.05328 43259.02314 51110.05432 46078.91189 66545.93145 1.035221108 0.640950341 0.561000171 1.063852156 0.51761688 0.618581067 0.650062629 0.76804176 0.692437702 1 16.02206284 -10.21178333 3.676072111 1.000354061 0.71951166 0.176804487 0.175613334 75331146.87 129671125.7 309498.6168 0.043451336 6.14E-11 10.21178333 -0.2808424 QALDYVELS(ph)PLTQAS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 QALDYVELSPLTQASPQR 18 0 F6WYE2;F6TR96;H0Y5J9;Q9H2D6-6;Q9H2D6-5;Q9H2D6-7;Q9H2D6-3;Q9H2D6-2;Q9H2D6 F6WYE2 TRIOBP TRIO and F-actin-binding protein 2 0 QALDYVELS(1)PLT(0.014)QAS(0.986)PQR 100.14 0.00069594 52464000 55545 71789 72820 52640 80826 64971 66651 84667 64042 76829 TRUE FALSE FALSE 67900.79362 80184.09907 99759.14829 55515.58991 72778.67964 68372.7811 52410.46936 63902.2855 76894.64197 57676.94423 1.177260594 1.390227935 1.729619168 0.962526546 1.26183314 1.185443889 0.90869012 1.107934658 1.333195491 1 15.81570711 -5.2794756 24.99651086 1.114282224 1.42815515 0.41628989 0.175620072 798.4220282 1106536.317 0.050013829 0.074349965 5.25E-06 5.2794756 0.313872925 QALDYVELSPLTQAS(ph)PQR ddPTM_HeLa_A485_30min_R1 3 QALDYVELSPLTQASPQR 18 0 F6WYE2;F6TR96;H0Y5J9;Q9H2D6-6;Q9H2D6-5;Q9H2D6-7;Q9H2D6-3;Q9H2D6-2;Q9H2D6 F6WYE2 TRIOBP TRIO and F-actin-binding protein 1 0 QALDYVELSPLTQAS(1)PQR;QALDYVELSPLT(0.094)QAS(0.906)PQR;QALDYVELSPLTQAS(1)PQR ;; 239.13 2.80E-45 1550350000 1254305 1768390 1756700 1350215 1988610 1711350 2033570 2294950 1621960 1903290 TRUE FALSE FALSE 1533320.82 1975187.828 2406576.432 1423973.827 1790617.006 1800953.64 1599081.157 1732109.914 1947472.495 1428834.83 1.073126709 1.382376595 1.684292951 0.996597925 1.253200837 1.260435147 1.119150459 1.212253423 1.362979438 1 20.44640772 -5.285055421 24.99241274 1.185787171 1.380176684 0.22741061 0.174280149 1203.451547 1273587.245 0.049006497 0.072733893 5.19E-06 5.285055421 0.194389512 QALDYVELSPLTQAS(ph)PQR ddPTM_HeLa_A486_30min_R1 4 QALDYVELSPLTQASPQR 18 0 F6WYE2;F6TR96;H0Y5J9;Q9H2D6-6;Q9H2D6-5;Q9H2D6-7;Q9H2D6-3;Q9H2D6-2;Q9H2D6 F6WYE2 TRIOBP TRIO and F-actin-binding protein 1 0 QALDYVELSPLTQAS(1)PQR;QALDYVELSPLTQAS(1)PQR;QALDYVELSPLTQAS(1)PQR;QALDYVELSPLTQAS(1)PQR ;;; 260.49 7.51E-58 1824320000 2009660 2352060 2037190 721240 2507200 2041800 2357100 2323070 1927670 2408440 TRUE FALSE FALSE 1868793.212 2165674.2 2826044.526 1679083.169 2192723.597 1789903.476 1767328.649 1794157.673 2094761.988 1805350.948 1.035141236 1.199586265 1.565371281 0.930059151 1.214569167 0.991443507 0.97893911 0.993799945 1.160307358 1 20.78384788 -5.310471008 24.99999502 1.041087773 1.259990072 0.337557054 0.146407429 434.455431 221517.0045 0.041240335 0.061169449 4.89E-06 5.310471008 0.218902299 QALHSLELHYQAFLR ddPTM_HeLa_A485_30min_R1 1 QALHSLELHYQAFLR 15 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 228.73 1.37E-23 32201000 24149 34822 34590 24755 36322 24551 39537 43560 26421 35350 FALSE FALSE TRUE 29520.86174 38894.12999 47386.28041 26107.30297 32705.65415 25836.4524 31089.59696 32876.8417 31723.45235 26537.89557 1.112404021 1.465607169 1.785608067 0.983774426 1.232413251 0.973568244 1.171517044 1.238863934 1.195401959 1 14.69576635 -5.284038018 24.92443007 1.125124126 1.455646585 0.434090274 0.178026211 712.6117099 785950.1745 0.050443052 0.074879092 5.20E-06 5.284038018 0.330522459 QALHSLELHYQAFLR ddPTM_HeLa_A486_30min_R1 2 QALHSLELHYQAFLR 15 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 278.33 5.57E-53 47842000 65186 61487 56960 19647.6 79028 61175 70667 70735 59475 60333 FALSE FALSE TRUE 60616.79802 56614.54619 79016.43744 45740.60573 69115.57133 53627.85048 52985.36916 54630.18463 64630.34089 45225.2241 1.340331623 1.251835614 1.74717625 1.011395889 1.528252711 1.18579513 1.171588869 1.207958296 1.429077294 1 15.46484003 -6.304819482 24.84488843 1.21017532 1.369299236 0.160454885 0.201238383 914.6701361 523852.1899 0.067794774 0.059789751 4.96E-07 6.304819482 0.159123915 QALPCVAES(ph)PTVHVEVHQR ddPTM_HeLa_A485_30min_R1 3 QALPCVAESPTVHVEVHQR 19 0 Q15645-2;Q15645 Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog 1 0 QALPCVAES(0.947)PT(0.053)VHVEVHQR;QALPCVAES(0.823)PT(0.177)VHVEVHQR;QALPCVAES(0.954)PT(0.046)VHVEVHQR ;; 132.72 2.05E-06 1610700000 647480 847960 855120 578150 1048470 748350 880960 1009150 715190 812340 TRUE FALSE FALSE 791509.6922 947121.5457 1171464.473 609732.8705 944080.6454 787532.4488 692735.6992 761654.3802 858722.0729 609838.588 1.29790031 1.553069229 1.920941862 0.999826647 1.548082827 1.291378513 1.135932873 1.248944221 1.408113704 1 19.21806792 -5.269854783 24.99997649 1.255048959 1.58688035 0.369909303 0.212433914 689.5087574 2048350.676 0.058850377 0.088917051 5.37E-06 5.269854783 0.331831391 QALPCVAES(ph)PTVHVEVHQR ddPTM_HeLa_A486_30min_R1 3 QALPCVAESPTVHVEVHQR 19 0 Q15645-2;Q15645 Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog 1 0 QALPCVAES(0.957)PT(0.043)VHVEVHQR;QALPCVAES(0.796)PT(0.204)VHVEVHQR;QALPCVAES(0.974)PT(0.026)VHVEVHQR ;; 162.65 1.64E-12 2039720000 606589 736150 666150 212230 845680 618494 745230 757590 595295 618541 TRUE FALSE FALSE 564070.2435 677814.793 924101.1201 494082.1655 739606.9287 542190.4987 558765.5718 585103.2951 646895.6499 463654.3076 1.216575009 1.461896896 1.993082141 1.065626173 1.595168893 1.169385229 1.205134003 1.261938659 1.395211129 1 18.82269003 -6.059454006 1.38767895 1.223034534 1.499991106 0.182663677 0.250690927 0.744736432 2.935933561 0.106735673 0.11405489 8.72E-07 6.059454006 0.276956572 QALPCVAESPTVHVEVHQR ddPTM_HeLa_A485_30min_R1 1 QALPCVAESPTVHVEVHQR 19 0 Q15645-2;Q15645 Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog 0 0 48.376 0.033376 45327000 10782 14703 20881 9541.2 24073 13904 13842 17245 16162 13915 FALSE FALSE TRUE 13180.4187 16422.38795 28605.75083 10062.4116 21676.20759 14631.99194 10884.54362 13015.63671 19405.56515 10446.24659 1.261737275 1.572085037 2.738375989 0.963256181 2.075023542 1.400693715 1.04195737 1.245962998 1.857659112 1 13.35069704 -6.501038131 22.47557244 1.294668018 1.729043598 0.151718206 0.493752835 411.963977 423942.3404 0.172336375 0.150288436 3.15E-07 6.501038131 0.43437558 QALQSTPLGSSSKS(ph)SPPVLQGPAPAGFSQHPGLLVPHTHAR ddPTM_HeLa_A486_30min_R1 1 QALQSTPLGSSSKSSPPVLQGPAPAGFSQHPGLLVPHTHAR 41 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 QALQSTPLGS(0.002)S(0.009)S(0.04)KS(0.773)S(0.176)PPVLQGPAPAGFSQHPGLLVPHTHAR 156.07 1.44E-11 804820000 85839 54461 56414 4092.1 94683 57159 77062 72469 54515 39117 TRUE FALSE FALSE 79822.12937 50145.31202 78259.01162 9526.615603 82806.97526 50107.30373 57780.27252 55969.39069 59240.40409 29321.84859 2.722274795 1.710168848 2.668965818 0.324898192 2.824070761 1.708872603 1.970553539 1.908794751 2.020350249 1 14.83968844 -11.00717227 2.355486656 0.000275397 1.961563928 0.157630366 0.680813107 9275567.924 3846881.157 50230811.24 0.15688204 9.84E-12 11.00717227 1.961288531 QALYLMFDTS(ph)QESPVK ddPTM_HeLa_A485_30min_R1 1 QALYLMFDTSQESPVK 16 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 QALYLMFDT(0.069)S(0.551)QES(0.38)PVK 89.541 0.0010841 35007000 40581 49372 46634 71424 85929 59681 57505 63648 58098 77847 TRUE FALSE FALSE 49608.10345 55145.62592 63885.8572 75325.71226 77373.60704 62805.80488 45218.58698 48038.2282 69757.73569 58441.17557 0.848855331 0.943609114 1.093165163 1.288915076 1.323957061 1.074684146 0.773745335 0.821992846 1.193640186 1 15.83469758 -6.547590093 24.13508923 0.93132537 1.110991806 0.153482801 0.168633185 279.6781591 273152.6283 0.07030244 0.054458918 2.83E-07 6.547590093 0.179666436 QALYLMFDTSQES(ph)PVK ddPTM_HeLa_A486_30min_R1 1 QALYLMFDTSQESPVK 16 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 QALYLMFDT(0.033)S(0.113)QES(0.854)PVK 79.771 0.0042112 34848000 63936 85475 80745 19105 105020 66104 67622 75772 75455 49729 TRUE FALSE FALSE 59454.41657 78701.64971 112011.6264 44477.40551 91847.41233 57948.76058 50702.26037 58520.36969 81995.50015 37276.53472 1.594955567 2.111292004 3.004883026 1.193174362 2.463947173 1.554564044 1.360165604 1.569898332 2.199654576 1 15.18598013 -6.2965601 23.07213749 1.5614316 2.078561416 0.204581191 0.528073007 419.8660607 275823.8724 0.182296556 0.160781989 5.05E-07 6.2965601 0.517129816 QAPGQTQGGQPWTYHLVQFADLLLNHSHNVTTVTPFTAQQR ddPTM_HeLa_A485_30min_R1 2 QAPGQTQGGQPWTYHLVQFADLLLNHSHNVTTVTPFTAQQR 41 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 ; ; 195.92 3.70E-52 104459000 15004.7 22795.9 23743.8 18008.1 24026.4 20073.8 23893.2 26268 15285.3 23244.5 FALSE FALSE TRUE 18342.44375 25461.68221 32527.61968 18991.8369 21634.24725 21124.83313 18788.22263 19825.73181 18352.9195 17450.07393 1.051138455 1.459116007 1.864039075 1.088352805 1.23977969 1.210587027 1.076684414 1.136140276 1.051738782 1 14.09094553 QAPGQTQGGQPWTYHLVQFADLLLNHSHNVTTVTPFTAQQR ddPTM_HeLa_A486_30min_R1 1 QAPGQTQGGQPWTYHLVQFADLLLNHSHNVTTVTPFTAQQR 41 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 0 0 93.656 4.70E-08 20722000 1663.9 1778.7 1516.7 609.54 2558.9 1449.7 1822.7 1592.2 2143.5 1612.8 FALSE FALSE TRUE 1547.269202 1637.749334 2104.006859 1419.039924 2237.938901 1270.850753 1366.641181 1229.690817 2329.300306 1208.944382 1.279851435 1.354693696 1.740366959 1.173784291 1.851151247 1.051206964 1.130441732 1.017160785 1.926722469 1 10.23953216 -6.304558577 24.99992534 1.220262443 1.470466761 0.141593275 0.313213074 991.3574891 574772.7171 0.106613736 0.094025038 4.96E-07 6.304558577 0.250204319 QAPGVGAVGGGS(ph)PER ddPTM_HeLa_A485_30min_R1 2 QAPGVGAVGGGSPER 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 QAPGVGAVGGGS(1)PER;QAPGVGAVGGGS(1)PER ; 182.7 8.65E-18 1483070000 565900 852230 570150 508560 367230 593720 644480 616990 401440 583830 TRUE FALSE FALSE 691782.5027 951890.8851 781072.2109 536341.3451 330667.2918 624806.2611 506781.5831 465672.2351 482005.3258 438291.9256 1.578360135 2.17181935 1.782082136 1.223708021 0.754445319 1.42554819 1.156264931 1.062470486 1.09973581 1 18.74153258 -5.265779377 3.815498843 1.099216703 1.893849273 0.734400333 0.205492569 0.105909789 3.521637569 0.056691176 0.09505929 5.42E-06 5.265779377 0.79463257 QAPGVGAVGGGS(ph)PER ddPTM_HeLa_A486_30min_R1 2 QAPGVGAVGGGSPER 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 QAPGVGAVGGGS(1)PER;QAPGVGAVGGGS(1)PER ; 192.85 2.48E-18 1213670000 633140 595050 292880 138428 376550 368340 411850 396710 433810 622300 TRUE FALSE FALSE 588760.1555 547896.0709 406290.9796 322267.3798 329319.5878 322897.9558 308800.7739 306387.7931 471413.0001 466472.0295 1.262155324 1.174552891 0.870986799 0.690861101 0.705979281 0.692212899 0.661992047 0.656819217 1.010592212 1 18.83143105 -4.79572129 2.68277184 0.749242215 1.251614931 0.660720555 0.125259935 0.14528977 2.077095929 0.033137906 0.098582359 1.60E-05 4.79572129 0.502372717 QAPGVGAVGGGS(ph)PEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_HeLa_A485_30min_R1 4 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 2 0 QAPGVGAVGGGS(1)PEREEVGAGY(0.012)NS(0.988)EDEYEAAAAR;QAPGVGAVGGGS(1)PEREEVGAGY(0.202)NS(0.788)EDEY(0.01)EAAAAR;QAPGVGAVGGGS(1)PEREEVGAGY(0.012)NS(0.988)EDEYEAAAAR;QAPGVGAVGGGS(1)PEREEVGAGY(0.001)NS(0.999)EDEYEAAAAR ;;; 269.74 5.98E-65 1997990000 711400 836230 1039470 894960 1282570 932300 1195500 1260720 964280 1132960 TRUE FALSE FALSE 869648.4757 934019.8243 1424013.209 943849.3986 1154872.827 981113.7864 940071.6587 951526.4433 1157802.151 850533.9226 1.022473593 1.098157051 1.674257982 1.109713997 1.357821007 1.153526932 1.105272387 1.118740144 1.361265107 1 19.69800925 -6.370114169 13.35279111 1.152405315 1.259403503 0.070570372 0.18882222 2.857954476 339.292313 0.067042652 0.059119817 4.26E-07 6.370114169 0.106998189 QAPGVGAVGGGS(ph)PEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_HeLa_A486_30min_R1 3 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 2 0 QAPGVGAVGGGS(1)PEREEVGAGY(0.102)NS(0.898)EDEYEAAAAR;QAPGVGAVGGGS(1)PEREEVGAGY(0.002)NS(0.998)EDEYEAAAAR;QAPGVGAVGGGS(1)PEREEVGAGY(0.048)NS(0.952)EDEYEAAAAR ;; 241.39 8.24E-51 1868310000 610430 789940 729020 340797 970730 768860 833920 865870 681760 787970 TRUE FALSE FALSE 567642.0093 727342.2775 1011316.068 793392.6389 848971.9917 674005.8704 625264.3957 668730.3028 740855.5057 590657.1832 0.961034633 1.231411889 1.712187876 1.343237095 1.437334576 1.141111781 1.05859103 1.13218009 1.254290182 1 19.17196151 -6.327071471 7.149255914 1.120561165 1.352131835 0.259693145 0.184721768 0.400429372 37.8976685 0.068826131 0.060710088 4.71E-07 6.327071471 0.23157067 QAPLPS(ph)PESLDLGR ddPTM_HeLa_A485_30min_R1 3 QAPLPSPESLDLGR 14 0 H3BRS1;Q12968 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 1 0 QAPLPS(0.998)PES(0.002)LDLGR;QAPLPS(0.996)PES(0.004)LDLGR;QAPLPS(1)PESLDLGR ;; 143.43 9.76E-08 117808000 166090 195339 175975 149083 210561 169284 198543 193308 152004 159612 TRUE FALSE FALSE 203036.1475 218182.1968 241075.4754 157227.0268 189596.8075 178147.4485 156122.6661 145898.9099 182509.8085 119823.6658 1.694457819 1.82086064 2.011918712 1.312153369 1.582298507 1.486746773 1.30293682 1.217613473 1.523153271 1 16.87055335 -5.22362437 0.186148961 0.92844967 2.389205375 0.624491658 0.174826446 7.197218121 0.364177772 0.557097999 2.604005681 5.98E-06 5.22362437 1.460755705 AES(ph)DGS(ph)LLLES(ph)K ddPTM_HeLa_A486_30min_R1 2 AESDGSLLLESK 12 0 Q6IN85-2;Q6IN85;Q6IN85-4;G3V231;H0YIY8;G3V5Z3;Q6IN85-5;G3V4R3;G3V5A2;Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7 Q6IN85-2;Q5MIZ7-3 SMEK1;SMEK2 Serine/threonine-protein phosphatase 4 regulatory subunit 3A;Serine/threonine-protein phosphatase 4 regulatory subunit 3B 3 0 AES(1)DGS(1)LLLES(1)K;AES(1)DGS(1)LLLES(1)K ; 59.227 0.026016 1168160000 6037300 1295420 224065 589750 489760 770980 1025740 1023870 426300 1408400 TRUE FALSE FALSE 5614116.447 1192766.201 310828.9687 1372967.804 428329.734 675864.3264 769089.0028 790757.1519 463252.0272 1055727.473 5.317770534 1.129805023 0.294421597 1.300494531 0.405719985 0.640188253 0.728491985 0.749016363 0.438798875 1 20.00980603 -4.263528373 4.047162038 0.695088256 5.713037591 0.960505423 0.279503813 0.03594416 1.263398699 0.065127152 0.527552398 5.45E-05 4.263528373 5.017949335 up QAPPHIELS(ph)NSSPDPMAEAER ddPTM_HeLa_A486_30min_R1 1 QAPPHIELSNSSPDPMAEAER 21 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QAPPHIELS(0.439)NS(0.345)S(0.216)PDPMAEAER 84.933 0.00094078 389800000 48729 48071 32775 31085 62146 78264 103050 80856 47238 106630 TRUE FALSE FALSE 45313.34874 44261.67889 45466.35774 72367.45095 54351.06919 68608.58341 77265.80005 62446.85387 51332.62787 79929.15396 0.566918909 0.553761384 0.568833217 0.905394932 0.679990548 0.858367442 0.966678568 0.781277554 0.642226589 1 16.2864342 -5.248837535 23.9078162 0.824505039 0.562230126 0.570984619 0.107152896 322.7327524 612275.5858 0.029141816 0.049980008 5.64E-06 5.248837535 -0.262274913 QAPPHIELSNSS(ph)PDPMAEAER ddPTM_HeLa_A485_30min_R1 4 QAPPHIELSNSSPDPMAEAER 21 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QAPPHIELSNS(0.005)S(0.995)PDPMAEAER;QAPPHIELSNS(0.015)S(0.985)PDPMAEAER;QAPPHIELSNS(0.01)S(0.99)PDPMAEAER;QAPPHIELSNS(0.036)S(0.964)PDPMAEAER ;;; 298.97 2.77E-87 2671540000 340968 505770 493950 355791 535182 502478 539605 636360 480415 492117 TRUE FALSE FALSE 416815.1553 564915.4019 676682.66 375226.9614 481897.4009 528786.9711 424313.9836 480291.7122 576829.8839 369441.2886 1.12823111 1.529107383 1.831637883 1.015660601 1.304395085 1.431315306 1.148528864 1.300048822 1.561357384 1 18.49498558 -5.273734246 24.99901868 1.269508613 1.499603681 0.193625081 0.22677115 1293.010646 2629062.214 0.063639055 0.095164234 5.32E-06 5.273734246 0.230095068 QAPPHIELSNSS(ph)PDPMAEAER ddPTM_HeLa_A486_30min_R1 5 QAPPHIELSNSSPDPMAEAER 21 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QAPPHIELSNS(0.01)S(0.99)PDPMAEAER;QAPPHIELSNS(0.008)S(0.992)PDPMAEAER;QAPPHIELSNS(0.032)S(0.968)PDPMAEAER;QAPPHIELSNS(0.034)S(0.966)PDPMAEAER;QAPPHIELS(0.011)NS(0.181)S(0.808)PDPMAEAER ;;;; 285.02 3.26E-73 2740280000 703745 618181 574787 240014 790604 601494 837150 783700 636814 1174880 TRUE FALSE FALSE 654416.1096 569194.0862 797359.9197 558764.7216 691439.0742 527287.7858 627686.2155 605268.6181 692013.5503 880682.4008 0.743078446 0.646310277 0.905388729 0.634467909 0.785117397 0.59872638 0.712727102 0.687272299 0.785769705 1 19.74826231 -8.129191294 3.630400844 0.99994727 0.71449125 0.52268218 0.082186815 0.471389468 11.57498883 0.075150429 0.019824704 7.43E-09 8.129191294 -0.28545602 QAQAQES(ph)EEEEESR ddPTM_HeLa_A485_30min_R1 4 QAQAQESEEEEESR 14 0 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 0 QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR ;;; 467.77 1.51E-206 7450330000 1576851 1970050 1947450 1591510 2365110 1693290 2226740 2318840 1771850 1813130 TRUE FALSE FALSE 1927616.065 2200430.21 2667892.795 1678450.161 2129631.344 1781948.046 1750978.808 1750140.854 2127444.043 1361150.059 1.416167198 1.616596345 1.960028417 1.233111772 1.564582339 1.309148858 1.2863966 1.285780978 1.562975389 1 20.37639469 -5.285833492 24.98634021 1.340495684 1.659497307 0.389140107 0.196329513 792.6420545 811883.5716 0.053871407 0.079944992 5.18E-06 5.285833492 0.319001623 QAQAQES(ph)EEEEESR ddPTM_HeLa_A486_30min_R1 7 QAQAQESEEEEESR 14 0 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 0 QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR ;;;;;; 363.3 7.38E-97 7697342000 1331521 1603645 1526748 493821.6 1909270 1454566 1580825 1636893 1347743 1529905 TRUE FALSE FALSE 1238188.254 1476566.33 2117945.713 1149641.641 1669791.553 1275116.436 1185285.865 1264208.197 1464566.448 1146806.83 1.079683362 1.287545811 1.846819933 1.002471917 1.456035585 1.111884236 1.033553196 1.1023724 1.277082077 1 20.12919097 -6.284586984 20.94982632 1.106912264 1.341917011 0.207900662 0.223765639 169.5559444 153454.9544 0.07855364 0.069377545 5.19E-07 6.284586984 0.235004747 QAQIEVVPSASALIIK ddPTM_HeLa_A485_30min_R1 2 QAQIEVVPSASALIIK 16 0 P30050 P30050 RPL12 60S ribosomal protein L12 0 0 ; ; 230.26 1.47E-26 56703000 42816 51188 46963 45559 68994 55771 71603 73920 51480 79072 FALSE FALSE TRUE 52340.27149 57173.99132 64336.56799 48047.77281 62124.71511 58691.08332 56304.43411 55791.0041 61811.5638 59360.80561 0.881731152 0.963160637 1.083822353 0.80941915 1.046561186 0.98871777 0.94851196 0.93986265 1.041285797 1 15.85722305 -4.285868408 4.908528087 0.97800812 0.878299286 0.146629979 0.071640689 0.303266355 20.18999698 0.017060651 0.095403097 5.18E-05 4.285868408 -0.099708834 QAQIEVVPSASALIIK ddPTM_HeLa_A486_30min_R1 2 QAQIEVVPSASALIIK 16 0 P30050 P30050 RPL12 60S ribosomal protein L12 0 0 ; ; 156.8 1.22E-09 46656000 42050 48715 37464 17939.1 53612 55802 56587 60004 45757 57185 FALSE FALSE TRUE 39102.51215 44854.64598 51971.06412 41763.13139 46887.48305 48917.71659 42428.33408 46342.39908 49723.2536 42865.50379 0.912213988 1.046404265 1.212421633 0.974282995 1.093827878 1.141190754 0.989801363 1.081111733 1.159982952 1 15.38752948 -4.304468509 4.193641744 1.082439502 0.90467035 0.320205095 0.073421466 0.219453123 7.829117074 0.017749201 0.104550901 4.96E-05 4.304468509 -0.177769152 QAQT(ph)QTSPEHLVLQQK ddPTM_HeLa_A485_30min_R1 1 QAQTQTSPEHLVLQQK 16 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 QAQT(0.518)QT(0.179)S(0.303)PEHLVLQQK 151.87 5.41E-08 432390000 330930 382230 298960 391650 500570 445530 571900 644370 351780 480440 TRUE FALSE FALSE 404544.2368 426928.4735 409557.7448 413044.8478 450731.4932 468857.2619 449708.893 486337.2472 422379.0193 360675.1498 1.121630467 1.18369251 1.135530809 1.145199074 1.24968824 1.299943348 1.246853001 1.348407971 1.171078793 1 18.4603405 -5.759818968 24.86174243 1.242155926 1.148384406 0.10635034 0.089742371 63.54259594 974905.0961 0.025378037 0.031061317 1.74E-06 5.759818968 -0.093771521 QAQT(ph)QTSPEHLVLQQK ddPTM_HeLa_A486_30min_R1 1 QAQTQTSPEHLVLQQK 16 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 QAQT(0.504)QT(0.189)S(0.307)PEHLVLQQK 160.13 1.53E-09 0 331230 300560 205450 124620 327610 326890 385010 359670 256760 369770 TRUE FALSE FALSE 308012.4875 276742.531 285005.7421 290121.6579 286518.099 286561.6354 288676.4258 277780.9925 279016.1635 277177.1852 1.11124762 0.998431854 1.028243872 1.046701076 1.033700154 1.033857224 1.041486966 1.002178416 1.006634667 1 18.08044899 -4.251013403 24.80984501 1.02374595 1.111247675 0.705070288 0.017395016 820.6975577 1952905.367 0.004506944 0.063523445 5.61E-05 4.251013403 0.087501725 QAS(ph)ESSSRPH ddPTM_HeLa_A485_30min_R1 5 QASESSSRPH 10 1 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 0 QAS(0.995)ES(0.005)SSRPH;QAS(0.996)ES(0.004)SSRPH;QAS(0.998)ES(0.002)SSRPH;QAS(0.996)ES(0.004)SSRPH;QAS(0.997)ES(0.003)SSRPH ;;;; 125.84 5.36E-05 5607535000 1666445 1913957 733238 1884729 601532 1856188 1130061 1924823 1526211 1843573 TRUE FALSE FALSE 2037139.941 2137777.622 1004493.249 1987686.973 541641.362 1953375.133 888614.2356 1452757.141 1832507.548 1384004.18 1.471917478 1.544632345 0.725787728 1.436185672 0.391358184 1.411393956 0.64206037 1.049676845 1.324062149 1 20.40041687 -4.744375161 24.98558596 0.995437493 1.508275338 0.285680455 0.323013587 284.4373265 416469.1304 0.075879975 0.19965913 1.80E-05 4.744375161 0.512837845 QAS(ph)ESSSRPH ddPTM_HeLa_A486_30min_R1 1 QASESSSRPH 10 1 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 0 QAS(0.999)ES(0.001)SSRPH 157.5 6.85E-07 633450000 726860 196650 706980 91330 264220 1339500 408270 365120 1167500 633540 TRUE FALSE FALSE 675910.8675 181066.7378 980741.5896 212620.8556 231079.0638 1174246.109 306116.5278 281990.1465 1268699.84 474897.4603 1.423277495 0.381275439 2.065164949 0.447719504 0.486587281 2.472630846 0.644594999 0.59379165 2.671523741 1 18.85725652 QAS(ph)LDGLQQLR ddPTM_HeLa_A485_30min_R1 2 QASLDGLQQLR 11 0 Q3MII6 Q3MII6 TBC1D25 TBC1 domain family member 25 1 0 QAS(1)LDGLQQLR;QAS(1)LDGLQQLR ; 143.64 1.03E-06 387570000 129801 169056 174480 158380 218721 179105 199946 226600 158702 218050 TRUE FALSE FALSE 158674.7846 188825.6286 239027.4127 167031.8984 196944.3693 188482.6609 157225.9037 171025.9947 190552.0357 163694.1479 0.969336941 1.153527057 1.46020744 1.020390164 1.203124069 1.151431882 0.960485794 1.044789914 1.164073598 1 17.32064322 -6.615137629 8.237890463 1.046408836 1.170392179 0.159710754 0.13102347 0.483714488 38.19140066 0.050884543 0.039333164 2.43E-07 6.615137629 0.123983343 QAS(ph)PAWK ddPTM_HeLa_A485_30min_R1 5 QASPAWK 7 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 0 QAS(1)PAWK;QAS(1)PAWK;QAS(1)PAWK;QAS(1)PAWK;QAS(1)PAWK ;;;; 94.363 0.0044349 1205960000 3318490 3466370 2506960 3743620 4249040 3899160 5087500 5533970 3157510 4976210 TRUE FALSE FALSE 4056676.652 3871731.818 3434388.827 3948124.481 3825990.658 4103313.988 4000514.064 4176755.181 3791193.295 3735732.427 1.085911995 1.036405014 0.919334801 1.056854193 1.024160786 1.098396116 1.070878105 1.118055231 1.014846049 1 21.83295969 -5.964517813 2.48570835 1.06786153 1.017128006 0.080509721 0.052383589 0.556653608 6.96310186 0.018203329 0.020302761 1.09E-06 5.964517813 -0.050733524 QAS(ph)PAWK ddPTM_HeLa_A486_30min_R1 3 QASPAWK 7 0 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 0 QAS(1)PAWK;QAS(1)PAWK;QAS(1)PAWK ;; 89.171 0.0070091 1614990000 2950620 2802320 1550560 1108810 2858030 2907500 3439270 3381300 2203520 3670030 TRUE FALSE FALSE 2743796.775 2580253.957 2150978.357 2581365.716 2499549.227 2548802.211 2578728.269 2611451.803 2394522.888 2751030.6 0.997370504 0.937922667 0.781880928 0.938326791 0.908586487 0.926489953 0.937368079 0.949263088 0.870409398 1 21.39154076 -6.315822116 2.019500008 0.935067561 0.90729032 0.037519185 0.058603939 1.368131997 10.9670815 0.024710302 0.021853925 4.83E-07 6.315822116 -0.027777241 QAS(ph)PQNLGTPGLLHPQTSPLLHSLVGQHILSVQQFTK ddPTM_HeLa_A485_30min_R1 1 QASPQNLGTPGLLHPQTSPLLHSLVGQHILSVQQFTK 37 0 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 QAS(0.962)PQNLGT(0.038)PGLLHPQTSPLLHSLVGQHILSVQQFTK 252.59 9.69E-65 479300000 60258 81961 66572 25433 90755 80519 75896 98230 64278 69040 TRUE FALSE FALSE 73662.18421 91545.62598 91199.75309 26822.34039 81719.11354 84734.85033 59680.19959 74138.93848 77178.00501 51829.59859 1.421237791 1.766280822 1.759607552 0.517510093 1.576688143 1.634873753 1.151469454 1.430436285 1.489072019 1 15.6614886 -13.38727782 0.129723212 5.10E-29 1.574989143 0.11092958 0.346873668 310.9694395 2.961819262 86.87923862 2.8599944 4.10E-14 13.38727782 1.574989143 QAS(ph)PTEVVER ddPTM_HeLa_A485_30min_R1 3 QASPTEVVER 10 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 QAS(0.576)PT(0.424)EVVER;QAS(0.955)PT(0.045)EVVER;QAS(0.884)PT(0.116)EVVER ;; 177.31 3.95E-08 4007900000 915940 1470640 1467950 913930 1564870 1256570 1455860 1665820 1232140 1250820 TRUE FALSE FALSE 1119687.693 1642618.555 2011005.791 963855.6817 1409066.048 1322362.062 1144803.618 1257275.033 1479419.196 939013.5936 1.192408396 1.749302211 2.141615207 1.026455515 1.500581097 1.40824592 1.219155532 1.338931664 1.575503492 1 19.84078652 -5.275763389 24.99609732 1.319730595 1.699928016 0.302781994 0.275642038 990.2519969 1728036.058 0.076956326 0.114745912 5.30E-06 5.275763389 0.380197421 QAS(ph)PTEVVER ddPTM_HeLa_A486_30min_R1 2 QASPTEVVER 10 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 QAS(0.993)PT(0.007)EVVER;QAS(0.829)PT(0.171)EVVER ; 211.05 2.76E-14 4208200000 2119100 2346600 2034820 781510 2776200 2148700 2473200 2552800 2104600 2482700 TRUE FALSE FALSE 1970562.033 2160646.87 2822756.798 1819394.775 2427983.109 1883615.24 1854379.201 1971583.167 2287028.423 1861015.76 1.0588637 1.161004069 1.516782855 0.97763534 1.304654781 1.012143626 0.996433905 1.059412397 1.228914054 1 20.82765884 -6.274223554 24.78797943 1.059159888 1.206235808 0.191055864 0.148529428 1217.862343 2361378.049 0.051801501 0.045968145 5.32E-07 6.274223554 0.14707592 QAS(ph)TDAGTAGALTPQHVR ddPTM_HeLa_A485_30min_R1 2 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QAS(0.665)T(0.335)DAGTAGALTPQHVR;QAS(0.705)T(0.295)DAGTAGALTPQHVR ; 238.68 2.12E-45 7946000000 333060 414640 357000 357730 526580 442600 593870 686430 340760 541670 TRUE FALSE FALSE 407148.048 463128.5411 489069.156 377271.8841 474151.8463 465773.8516 466984.823 518081.9662 409147.4064 406641.6377 1.001245348 1.138910771 1.202703094 0.927774849 1.166018928 1.145416033 1.148394015 1.274050462 1.006162105 1 18.63339842 QAS(ph)TDAGTAGALTPQHVR ddPTM_HeLa_A486_30min_R1 3 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QAS(0.944)T(0.056)DAGTAGALTPQHVR;QAS(0.929)T(0.071)DAGTAGALTPQHVR;QAS(0.927)T(0.073)DAGTAGALTPQHVR ;; 271.11 4.40E-69 10414400000 1935761 1810471 1407399 1163666 2367782 2048740 2958347 2797546 1778620 3229233 TRUE FALSE FALSE 1800074.15 1667002.684 1952381.584 2709073.256 2070792.703 1795987.289 2218137.29 2160605.846 1932792.214 2420612.038 0.74364422 0.688669914 0.806565263 1.119168712 0.855483105 0.741955861 0.916353904 0.89258659 0.798472528 1 21.20694044 -5.001516298 23.96081528 0.896314436 0.724022069 0.368140564 0.098758195 38.55355277 609308.9246 0.026629462 0.054114153 9.97E-06 5.001516298 -0.172292367 QAS(ph)VHDS(ph)GEEGEA ddPTM_HeLa_A485_30min_R1 2 QASVHDSGEEGEA 13 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-3 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 2 0 QAS(1)VHDS(1)GEEGEA;QAS(1)VHDS(1)GEEGEA ; 147.1 1.69E-07 753500000 592000 874360 792920 649740 1006580 789440 964260 1075430 752990 901710 TRUE FALSE FALSE 723688.3576 976608.7961 1086254.104 685233.651 906361.3609 830773.8577 758237.9737 811679.1063 904108.1862 676930.2917 1.069073679 1.442702163 1.60467646 1.012266195 1.338928649 1.227266482 1.120112341 1.199058627 1.335600131 1 19.36864775 -5.270244809 24.9998075 1.191044316 1.379205913 0.227119826 0.163915868 968.4997637 2749700.386 0.045420992 0.068579638 5.37E-06 5.270244809 0.188161597 QAS(ph)VHDS(ph)GEEGEA ddPTM_HeLa_A486_30min_R1 2 QASVHDSGEEGEA 13 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-3 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 2 0 QAS(1)VHDS(1)GEEGEA;QAS(1)VHDS(1)GEEGEA ; 155.57 5.72E-08 556630000 812810 865010 672670 270930 918130 842200 879210 954700 732020 860270 TRUE FALSE FALSE 755836.2164 796463.4573 933145.8387 630738.732 802969.5742 738297.9269 659222.3587 737335.651 795472.083 644852.7926 1.172106603 1.235108953 1.447067997 0.97811274 1.245198258 1.14490925 1.022283483 1.143417008 1.233571587 1 19.29861033 -5.267174692 24.99994807 1.119095213 1.27979596 0.355926531 0.107364268 547.9856104 2388644.991 0.029698421 0.045467021 5.41E-06 5.267174692 0.160700747 QAS(ph)VHDSGEEGEA ddPTM_HeLa_A485_30min_R1 2 QASVHDSGEEGEA 13 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-3 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 QAS(1)VHDSGEEGEA;QAS(1)VHDSGEEGEA ; 127.03 2.73E-05 567220000 464160 811900 797310 350990 928590 590980 792320 879800 672660 712450 TRUE FALSE FALSE 567410.7907 906844.6424 1092268.148 370163.6949 836136.3191 621922.799 623034.3593 664027.6705 807656.692 534849.3267 1.060879695 1.695514227 2.042197855 0.692089672 1.563311904 1.162800004 1.164878272 1.241522869 1.51006396 1 19.028773 -5.253489058 24.99875312 1.214021375 1.609128899 0.252114236 0.32081872 878.8240897 2763342.169 0.085400341 0.144644546 5.58E-06 5.253489058 0.395107524 QAS(ph)VHDSGEEGEA ddPTM_HeLa_A486_30min_R1 1 QASVHDSGEEGEA 13 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-3 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 QAS(1)VHDSGEEGEA 140.6 1.67E-06 394600000 407180 376970 370610 14518 491950 356540 390470 442680 408070 239090 TRUE FALSE FALSE 378638.7847 347097.5243 514120.1173 33798.6377 430245.0437 312553.7198 292770.276 341891.4276 443441.8362 179220.3078 2.112700226 1.936708672 2.86864878 0.188587098 2.40064895 1.743963749 1.633577576 1.907660085 2.47428342 1 17.4513746 -11.00242759 2.737807393 0.089676156 1.896474428 0.141221052 0.67756395 35313273.55 10632107.08 202682798.1 0.16562666 9.94E-12 11.00242759 1.806798272 QASASYDS(ph)EEEEEGLPMSYDEKR ddPTM_HeLa_A485_30min_R1 5 QASASYDSEEEEEGLPMSYDEKR 23 1 Q15059 Q15059 BRD3 Bromodomain-containing protein 3 1 0 QASASYDS(1)EEEEEGLPMSYDEKR;QASASYDS(1)EEEEEGLPMSYDEKR;QASASYDS(1)EEEEEGLPMSYDEKR;QASASYDS(1)EEEEEGLPMSYDEKR;QASASYDS(1)EEEEEGLPMSYDEKR ;;;; 318.57 2.25E-105 4232910000 877026 1011129 853980 926060 1289140 1219076 1641500 1822440 910496 1286920 TRUE FALSE FALSE 1072117.408 1129371.741 1169902.739 976648.3129 1160788.695 1282904.934 1290780.115 1375483.733 1093224.196 966114.528 1.109720822 1.168983291 1.210935873 1.010903247 1.201502163 1.327901504 1.336052898 1.423727408 1.131567908 1 19.8818347 -6.000651889 24.97205614 1.274829627 1.130872134 0.152232433 0.121446812 34.50680767 1321957.618 0.036563396 0.040971306 9.99E-07 6.000651889 -0.143957493 QASASYDS(ph)EEEEEGLPMSYDEKR ddPTM_HeLa_A486_30min_R1 3 QASASYDSEEEEEGLPMSYDEKR 23 1 Q15059 Q15059 BRD3 Bromodomain-containing protein 3 1 0 QASASYDS(1)EEEEEGLPMSYDEKR;QASASYDS(1)EEEEEGLPMSYDEKR;QASAS(0.003)YDS(0.997)EEEEEGLPMSYDEKR ;; 264.42 1.22E-61 2485290000 1106180 958310 685049 441124 989100 951390 1283130 1271630 787870 1244870 TRUE FALSE FALSE 1028642.494 882370.0255 950318.319 1026958.965 865037.855 834017.1748 962077.3024 982107.6085 856163.206 933146.4493 1.102337683 0.945585793 1.018402117 1.10053354 0.927011892 0.893768792 1.031003551 1.052468891 0.917501435 1 19.83174399 -5.774701588 24.99884582 0.972125256 1.033183253 0.233953949 0.062504142 423.5300623 798337.7469 0.020150553 0.022978868 1.68E-06 5.774701588 0.061057997 QASEGPLK ddPTM_HeLa_A485_30min_R1 3 QASEGPLK 8 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;; ;; 144.12 0.00073733 592360000 725790 728070 617140 816070 894590 902560 1180780 1259310 657120 1060100 FALSE FALSE TRUE 887239.4816 813211.4531 845445.7673 860649.8377 805521.4785 949816.646 928496.7069 950462.248 788997.9565 795836.5797 1.114851345 1.021832213 1.062335898 1.081440411 1.012169457 1.193482017 1.166692674 1.194293241 0.991407001 1 19.60211269 -6.249106817 24.94617839 1.124913173 1.05797203 0.090648468 0.072039599 1357.012825 2744952.745 0.023195254 0.023016121 5.63E-07 6.249106817 -0.066941142 QASGDTPTT(ph)PKHPK ddPTM_HeLa_A485_30min_R1 1 QASGDTPTTPKHPK 14 1 A0A087WWW8;Q9Y6J0-2;Q9Y6J0;B5MEB3 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 1 0 QASGDT(0.003)PT(0.478)T(0.52)PKHPK 82.707 0.0038745 66119000 107910 105390 67893 116960 133700 130320 187560 221140 74064 137860 TRUE FALSE FALSE 131914.2072 117714.4437 93009.44596 123349.2286 120388.3586 137143.3537 147486.2738 166905.0683 88927.96544 103494.0391 1.274606811 1.137403127 0.898693748 1.191848629 1.163239541 1.325132876 1.425070226 1.612702236 0.859256883 1 16.65918815 -6.01173681 2.557146937 1.2925715 1.109616131 0.038091013 0.217805101 0.627578869 8.244452479 0.075651115 0.08181686 9.73E-07 6.01173681 -0.18295537 QASGDTPTT(ph)PKHPK ddPTM_HeLa_A486_30min_R1 2 QASGDTPTTPKHPK 14 1 A0A087WWW8;Q9Y6J0-2;Q9Y6J0;B5MEB3 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 1 0 QASGDT(0.005)PT(0.072)T(0.924)PKHPK;QASGDTPT(0.055)T(0.945)PKHPK ; 104.76 0.00042492 134708000 231366 178676 97238 107944 183533 226240 304950 275830 153752 337340 TRUE FALSE FALSE 215148.4382 164517.063 134891.1577 251299.0872 160512.5798 198328.809 228648.2846 213029.5303 167079.3472 252867.8683 0.85083344 0.650604856 0.533445228 0.993796044 0.634768588 0.784317954 0.904220398 0.842453934 0.660737753 1 17.9480242 -14 0.141045297 1.803417686 0.679710667 0.212796555 0.134855239 212.6177019 1.82925183 48.21065326 0.810126176 1.00E-14 14 -1.123707019 QASGT(ph)PQPALR ddPTM_HeLa_A485_30min_R1 3 QASGTPQPALR 11 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 QAS(0.034)GT(0.966)PQPALR;QAS(0.004)GT(0.996)PQPALR;QAS(0.06)GT(0.94)PQPALR ;; 157.33 1.12E-06 972570000 983120 1382780 1145610 814190 1322370 1266130 1358680 1501910 975120 1130620 TRUE FALSE FALSE 1201811.652 1544484.092 1569418.812 858667.1381 1190710.2 1332422.609 1068386.919 1133564.218 1170817.64 848777.2415 1.415932937 1.819657758 1.849034982 1.011651934 1.402853589 1.56981425 1.258736529 1.335526169 1.379416863 1 19.69502645 -1.000005693 0.045020147 0.04207805 3.813284514 0.349708685 0.219664335 693.6033422 2.373153361 50.51040736 189.5304519 0.099998689 1.000005693 3.771206465 QASGT(ph)PQPALR ddPTM_HeLa_A486_30min_R1 2 QASGTPQPALR 11 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 QAS(0.008)GT(0.992)PQPALR;QAS(0.097)GT(0.903)PQPALR ; 143.56 5.03E-06 1238720000 1247720 1400520 1170290 372050 1559110 1129060 1277850 1224950 1050580 1049090 TRUE FALSE FALSE 1160261.271 1289537.695 1623457.629 866151.2024 1363551.886 989768.0566 958118.4143 946055.6255 1141645.12 786391.0356 1.475425353 1.639817389 2.064440661 1.10142558 1.733936202 1.258620727 1.218374029 1.203034601 1.45175246 1 19.58488735 -6.069678862 0.94669813 1.212988331 1.670815784 0.349350056 0.249616971 0.64034118 1.243337894 0.133655081 0.149463349 8.52E-07 6.069678862 0.457827453 QASPQNLGT(ph)PGLLHPQTSPLLHSLVGQHILSVQQFTK ddPTM_HeLa_A485_30min_R1 1 QASPQNLGTPGLLHPQTSPLLHSLVGQHILSVQQFTK 37 0 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 QAS(0.433)PQNLGT(0.567)PGLLHPQTSPLLHSLVGQHILSVQQFTK 295.97 8.35E-94 453980000 114440 151100 128280 61719 173840 118800 180480 184700 122450 147740 TRUE FALSE FALSE 139896.7832 168769.8306 175736.1102 65090.55269 156531.8792 125020.1843 141918.9736 139402.0354 147024.5918 110911.137 1.261341169 1.521667122 1.584476681 0.586871206 1.411326973 1.127210375 1.279573698 1.256880411 1.325607111 1 16.75904471 QAST(ph)DAGTAGALTPQHVR ddPTM_HeLa_A485_30min_R1 1 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QAS(0.097)T(0.903)DAGTAGALTPQHVR 302.78 2.47E-78 636540000 138350 183100 141980 110730 189000 159500 192470 222690 124130 154310 TRUE FALSE FALSE 169125.4802 204511.9522 194504.3103 116778.8995 170182.4964 167851.1734 151347.2122 168074.9283 149041.7524 115843.3569 1.459949753 1.765418042 1.679028608 1.008075928 1.469074283 1.448949494 1.306481582 1.450881025 1.286580055 1 16.82181579 -6.193166237 0.0478078 1.35E-10 2.833536526 0.402356798 0.182677071 119.5085388 2.180471582 55.44863804 72.63024549 6.41E-07 6.193166237 2.833536526 QAST(ph)DAGTAGALTPQHVR ddPTM_HeLa_A486_30min_R1 1 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QAS(0.097)T(0.903)DAGTAGALTPQHVR 307.25 3.42E-79 817280000 210890 225570 172310 61822 234170 212350 233300 283460 162350 241100 TRUE FALSE FALSE 196107.7 207695.0117 239033.0466 143924.7403 204798.2151 186152.416 174925.8724 218922.3459 176422.6287 180726.9907 1.085104661 1.149219665 1.322619525 0.7963655 1.133191087 1.030020006 0.967901207 1.211342838 0.976183071 1 17.46345246 -5.237476556 24.99431969 1.02864438 1.182005083 0.30310735 0.116517632 1064.049999 1109851.674 0.030731154 0.053195019 5.79E-06 5.237476556 0.153360703 QASTDAGTAGALT(ph)PQHVR ddPTM_HeLa_A485_30min_R1 2 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QASTDAGTAGALT(1)PQHVR;QASTDAGTAGALT(1)PQHVR ; 197.28 5.41E-25 1014550000 402900 516180 469840 339720 629910 530820 581110 696140 439910 543870 TRUE FALSE FALSE 492523.715 576542.7608 643653.3677 358278.0434 567193.9487 558612.9144 456951.1013 525410.5735 528195.9019 408293.2182 1.206299035 1.41208018 1.576448834 0.877501823 1.38918288 1.368166037 1.11917387 1.286846193 1.293668076 1 18.63924608 -13.64361254 0.184234557 5.79E-09 1.339060516 0.184675113 0.178234945 204.902155 2.237696545 75.72460921 0.53173 2.27E-14 13.64361254 1.33906051 QASTDAGTAGALT(ph)PQHVR ddPTM_HeLa_A486_30min_R1 2 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QASTDAGTAGALT(1)PQHVR;QASTDAGTAGALT(1)PQHVR ; 222.16 2.46E-34 1095400000 612740 621720 591190 197741 742560 575940 662760 678160 533210 676400 TRUE FALSE FALSE 569790.0902 572452.6429 820114.6006 460351.0413 649421.2007 504886.3785 496930.438 523757.7721 579429.0721 507025.0374 1.123790835 1.129042159 1.617503161 0.907945382 1.280846414 0.995781946 0.980090531 1.033001792 1.142801695 1 18.95169747 -5.312045824 24.99999861 1.054630202 1.274007937 0.322990327 0.159532292 439.0086544 216872.995 0.044327115 0.065747819 4.87E-06 5.312045824 0.219377735 QATINIGTIGHVAHGK ddPTM_HeLa_A486_30min_R1 1 QATINIGTIGHVAHGK 16 0 H7BZU1;Q2VIR3-2;Q2VIR3;P41091 H7BZU1 EIF2S3;EIF2S3L Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 0 0 197.88 2.95E-18 41074000 83480 81954 60613 24603 94849 83415 101160 93364 73943 103310 FALSE FALSE TRUE 77628.48309 75459.66657 84083.97687 57277.02737 82952.15399 73124.1054 75848.69804 72107.05532 80352.43878 77440.50356 1.002427406 0.974421176 1.085788095 0.739626226 1.071172709 0.94426175 0.979444794 0.931128441 1.037602225 1 16.24080071 -7.772352208 24.98298929 1.018801123 0.965984216 0.052359469 0.089794078 791.4911874 1811918.852 0.078985928 0.021215965 1.69E-08 7.772352208 -0.052816906 QATVSWDSGGSDEAPPKPS(ph)RPGYPSPR ddPTM_HeLa_A485_30min_R1 1 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 QATVSWDSGGSDEAPPKPS(0.5)RPGYPS(0.5)PR 184.55 2.27E-20 306250000 215030 219310 186410 257570 267750 213070 261330 279670 197340 332020 TRUE FALSE FALSE 262862.6817 244956.3968 255370.8162 271640.3969 241091.8699 224226.0157 205494.7106 211080.494 236944.3279 249253.5244 1.054599658 0.982760013 1.024542449 1.089815671 0.96725561 0.899590151 0.824440542 0.846850589 0.950615758 1 17.92725438 -6.08134743 3.337893994 0.890001116 1.033053572 0.570361668 0.05360846 0.172263414 3.689535496 0.018389006 0.018945976 8.29E-07 6.08134743 0.143052456 QATVSWDSGGSDEAPPKPSRPGYPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 QATVSWDSGGSDEAPPKPSRPGYPS(1)PR;QATVSWDSGGSDEAPPKPS(0.04)RPGYPS(0.96)PR ; 279.15 3.27E-77 1918590000 499670 525146 417125 672850 659350 527032 720670 696590 539620 888060 TRUE FALSE FALSE 610819.8677 586557.2565 571436.8955 709606.0918 593702.7989 554626.5806 566692.9672 525750.2103 647916.7843 666682.9855 0.916207374 0.879814348 0.857134362 1.064383083 0.8905324 0.831919507 0.850018644 0.788606012 0.971851387 1 19.34664138 -5.988266022 24.98619364 0.871570153 0.927780086 0.039217241 0.078457682 547.6460862 1166142.984 0.02413813 0.027351569 1.03E-06 5.988266022 0.056209932 QATVSWDSGGSDEAPPKPSRPGYPS(ph)PR ddPTM_HeLa_A486_30min_R1 4 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 QATVSWDSGGSDEAPPKPS(0.07)RPGYPS(0.93)PR;QATVSWDSGGSDEAPPKPS(0.025)RPGYPS(0.975)PR;QATVSWDSGGSDEAPPKPS(0.005)RPGYPS(0.995)PR;QATVSWDSGGSDEAPPKPS(0.187)RPGYPS(0.813)PR ;;; 255.37 2.95E-63 3688060000 997816 1078310 684285 397837 1087287 1090280 1169180 1185220 875018 1138540 TRUE FALSE FALSE 927874.2511 992860.7885 949258.4778 926184.6416 950909.3259 955772.3388 876638.7977 915371.2792 950865.2648 853442.1733 1.087213967 1.163360353 1.112270412 1.085234209 1.114204753 1.119902869 1.027180077 1.072563916 1.114153125 1 19.70293388 -13.99999989 0.098108106 0.674902647 1.170994639 0.495648365 0.032013507 157.9857149 1.057067058 10.49387542 0.583329413 1.00E-14 13.99999989 0.496091992 QAVEMKNDKS(ph)EEEQSSSSVK ddPTM_HeLa_A485_30min_R1 6 QAVEMKNDKSEEEQSSSSVK 20 2 P07910;P07910-2;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(0.984)EEEQS(0.013)S(0.003)SSVK;QAVEMKNDKS(1)EEEQSSSSVK ;;;;; 232.19 1.42E-36 5677180000 1328906 977610 454407 2066190 1562869 1790380 4294700 4308100 893692 3312750 TRUE FALSE FALSE 1624516.555 1091932.985 622511.0588 2179060.728 1407264.275 1884121.528 3377102.261 3251531.72 1073047.787 2486942.392 0.65321841 0.439066457 0.250311813 0.876200725 0.565861228 0.757605618 1.357933449 1.307441512 0.431472715 1 21.24594166 -6.544369795 6.626597004 1.052969814 0.560929574 0.385830398 0.27685161 0.169204592 28.41022944 0.106838638 0.084070719 2.86E-07 6.544369795 -0.49204024 QAVEMKNDKS(ph)EEEQSSSSVK ddPTM_HeLa_A486_30min_R1 8 QAVEMKNDKSEEEQSSSSVK 20 2 P07910;P07910-2;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(0.999)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(0.993)EEEQS(0.006)S(0.001)SSVK;QAVEMKNDKS(1)EEEQSSSSVK;QAVEMKNDKS(1)EEEQSSSSVK ;;;;;;; 269.27 6.98E-60 5505500000 3045596 1723123 635461 3254946 2045625 2513375 5356820 5103170 1292508 8027560 TRUE FALSE FALSE 2832115.448 1586576.458 881528.5174 7577678.784 1789043.638 2203300.347 4016486.977 3941289.592 1404543.634 6017406.725 0.470653818 0.263664487 0.146496416 1.259293102 0.297311403 0.366154466 0.667478062 0.654981418 0.233413445 1 22.52071044 -11.36411946 2.201029892 4.215534349 0.492168215 0.202756234 0.30638062 61467859.71 6507304.398 984156216.4 0.076835052 4.32E-12 11.36411946 -3.723366134 QAVEMKNDKS(ph)EEEQSSSSVKK ddPTM_HeLa_A486_30min_R1 1 QAVEMKNDKSEEEQSSSSVKK 21 3 P07910;P07910-2;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 QAVEMKNDKS(1)EEEQSSSSVKK 124.17 1.74E-06 232020000 240970 98305 21452 210990 120760 166370 369090 307390 61669 656650 TRUE FALSE FALSE 224079.2474 90514.95378 29758.7889 491195.3828 105613.1548 145844.9609 276739.7782 237404.0073 67014.51857 492220.5659 0.455241538 0.183891044 0.06045824 0.997917228 0.214564693 0.296300015 0.562227175 0.482312247 0.136147336 1 18.90894541 -11.1355166 2.388304925 2.303604482 0.381319092 0.344347884 0.258003712 15998477.88 4059462.158 113054460.1 0.066469899 7.32E-12 11.1355166 -1.92228539 QAVKT(ph)PPR ddPTM_HeLa_A486_30min_R1 1 QAVKTPPR 8 1 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;B5MCW3;Q9H0E9;Q9H0E9-3;H7C2P4 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 1 0 QAVKT(1)PPR 64.73 0.028865 415420000 335890 311960 186430 159760 336760 371400 417690 419220 260610 477120 TRUE FALSE FALSE 312345.8455 287239.1535 258620.6888 371929.3538 294520.4206 325580.4441 313179.5441 323772.7575 283199.8846 357646.0465 0.873337895 0.803138064 0.723119104 1.039936992 0.823496928 0.910342634 0.875668967 0.905288233 0.791844024 1 18.44817297 -14 0.201007814 1.594559993 0.841795154 0.195206576 0.081629878 240.8198198 2.384785207 58.0419562 0.193183525 1.00E-14 14 -0.752764839 QAVRVS(ph)PCHSR ddPTM_HeLa_A485_30min_R1 1 QAVRVSPCHSR 11 1 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7;Q674X7-5 A0A1B0GWK2 KAZN Kazrin 1 0 QAVRVS(0.711)PCHS(0.289)R 103.39 0.00044635 452300000 151240 271840 249140 161240 301030 262730 309470 415850 239720 235050 TRUE FALSE FALSE 184882.8162 303629.3233 341307.2536 170048.1329 271058.3962 276486.1365 243349.2064 313862.1355 287829.6052 176456.3608 1.047753764 1.720704893 1.934230379 0.963683781 1.536121424 1.566881099 1.379090021 1.778695503 1.631165938 1 17.42895191 -4.245009976 23.68392596 1.521575658 1.047753 0.168607532 0.298982925 2678.768275 3861469.61 0.072595368 1.756990697 5.69E-05 4.245009976 -0.473822658 QAVRVS(ph)PCHSR ddPTM_HeLa_A486_30min_R1 2 QAVRVSPCHSR 11 1 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7;Q674X7-5 A0A1B0GWK2 KAZN Kazrin 1 0 QAVRVS(0.954)PCHS(0.046)R;QAVRVS(0.917)PCHS(0.083)R ; 105.81 0.00025888 326630000 220781 225178 215512 75535 292220 195455 241849 262708 182429 242775 TRUE FALSE FALSE 205305.392 207334.0752 298964.018 175849.2973 255567.0428 171341.7493 181335.8222 202895.1233 198242.0926 181982.5598 1.128159711 1.13930739 1.642816863 0.966297526 1.404349093 0.941528405 0.996446156 1.114915207 1.089346654 1 17.47344067 -6.270663942 24.87752232 1.033629414 1.25506742 0.297233173 0.174996173 841.8843621 2270453.102 0.059860171 0.05353313 5.36E-07 6.270663942 0.221438007 QAVRVSPCHS(ph)R ddPTM_HeLa_A485_30min_R1 3 QAVRVSPCHSR 11 1 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7;Q674X7-5 A0A1B0GWK2 KAZN Kazrin 1 0 QAVRVS(0.221)PCHS(0.779)R;QAVRVS(0.396)PCHS(0.604)R;QAVRVS(0.36)PCHS(0.64)R ;; 91.307 0.0012686 1115980000 305872 557430 461910 283351 598620 495210 576310 787830 436070 421520 TRUE FALSE FALSE 373912.1712 622616.5895 632789.7307 298829.7476 539019.2909 521138.4299 453176.6605 594613.4572 523585.2491 316442.8215 1.181610534 1.967548471 1.999696905 0.944340422 1.703370259 1.646864439 1.432096511 1.879054972 1.654596703 1 18.27158532 -10.24812414 4.191280509 0.999568621 1.611779695 0.240613803 0.319804168 216023530.3 672.9509685 900193.3653 0.076181994 5.65E-11 10.24812414 0.612211074 QAVRVSPCHS(ph)R ddPTM_HeLa_A486_30min_R1 2 QAVRVSPCHSR 11 1 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7;Q674X7-5 A0A1B0GWK2 KAZN Kazrin 1 0 QAVRVS(0.466)PCHS(0.534)R;QAVRVS(0.445)PCHS(0.555)R ; 97.797 0.00032373 231740000 329980 372140 318600 115828 442750 312190 365360 415810 277490 367410 TRUE FALSE FALSE 306850.106 342650.2711 441970.4524 269653.4376 387216.1665 273675.1719 273943.0636 321139.1401 301543.0566 275408.1446 1.114164966 1.244154459 1.604783523 0.979104805 1.405972097 0.99370762 0.994680328 1.166048087 1.094895204 1 18.0712117 -6.273757786 24.76562165 1.056795128 1.270699022 0.312909499 0.162664622 886.1691464 1781599.119 0.056320394 0.050025104 5.32E-07 6.273757786 0.213903894 QAYS(ph)PR ddPTM_HeLa_A485_30min_R1 9 QAYSPR 6 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 QAY(0.001)S(0.999)PR;QAY(0.001)S(0.999)PR;QAYS(1)PR;QAYS(1)PR;QAYS(1)PR;QAY(0.001)S(0.999)PR;QAYS(1)PR;QAYS(1)PR;QAY(0.002)S(0.998)PR ;;;;;;;; 113.74 0.0070185 32638370000 13808560 20639480 18924180 13432430 20275810 18550610 21463200 24331580 16363820 17762420 TRUE FALSE FALSE 16880226.53 23053087.65 25925021.68 14166209.64 18257079.16 19521891.25 16877411.98 18364221.85 19647888.58 13334575.59 1.265899047 1.728820501 1.944195487 1.062366743 1.369153375 1.464005444 1.265687976 1.377188328 1.473454363 1 23.66866857 -12.45427656 0.100156887 9.40E-15 1.775259472 0.256433413 0.232184198 178.5767716 1.712462061 43.07301288 4.555714338 3.51E-13 12.45427656 1.775259472 QAYS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QAYSPR 6 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 QAY(0.002)S(0.998)PR 86.113 0.017265 30682000000 5465500 5705600 4914200 1716400 6240000 5076000 6035600 5617500 4789900 5901300 TRUE FALSE FALSE 5082396.674 5253467.477 6817109.847 3995865.942 5457321.014 4449774.729 4525429.042 4338517.879 5205092.389 4423576.069 1.148933938 1.187606451 1.541085705 0.90331123 1.233689877 1.005922507 1.02302503 0.980771623 1.176670709 1 22.0767817 -5.279757933 24.97631052 1.050565923 1.282048524 0.420426066 0.132302519 778.8979245 1061981.67 0.036406456 0.054116576 5.25E-06 5.279757933 0.231482601 QAYS(ph)PRR ddPTM_HeLa_A485_30min_R1 2 QAYSPRR 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 QAYS(1)PRR;QAYS(1)PRR ; 88.181 0.0042452 168329000 71333 154982 133820 67653 226736 189773 242641 383250 122287 115145 TRUE FALSE FALSE 87200.77975 173105.7967 183325.5867 71348.71208 204161.3677 199709.2208 190798.7682 289257.3366 146828.8792 86441.47059 1.008784084 2.002578109 2.120805968 0.825399101 2.361845146 2.31034039 2.207259627 3.346279681 1.698593027 1 16.399436 -5.820805596 24.99963325 2.281843478 1.571137502 0.172440989 0.670056017 116.2534167 48954.32761 0.200210209 0.227017144 1.51E-06 5.820805596 -0.710705976 QAYS(ph)PRR ddPTM_HeLa_A486_30min_R1 3 QAYSPRR 7 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 QAYS(1)PRR;QAYS(1)PRR;QAYS(1)PRR ;; 74.269 0.010299 219979000 130551 119315 175550 74534 326526 132603 213354 235965 110065 139379 TRUE FALSE FALSE 121400.0491 109860.0449 243527.6614 173518.9187 285570.0643 116243.7901 159970.5726 182240.9206 119605.5228 104477.5912 1.161972129 1.051517781 2.330908079 1.660824266 2.733314016 1.112619354 1.531147213 1.7443063 1.144795946 1 16.67283401 -7.840571226 4.390046094 1.012218496 1.680560441 0.182094347 0.504949607 0.364279416 12.16848147 0.490593652 0.130608109 1.44E-08 7.840571226 0.668341945 QCEGIT(ph)SPEGSK ddPTM_HeLa_A486_30min_R1 2 QCEGITSPEGSK 12 0 Q9Y570-4;Q9Y570;Q9Y570-2 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 QCEGIT(0.653)S(0.347)PEGSK;QCEGIT(0.911)S(0.089)PEGSK ; 247.17 1.88E-27 540280000 1080400 1083900 641750 565200 1071770 1198580 1545010 1477330 804440 1409930 TRUE FALSE FALSE 1004669.539 998007.8165 890252.7867 1315814.164 937338.6127 1050711.386 1158432.157 1140974.209 874169.5069 1056874.351 0.950604524 0.944301293 0.842344964 1.245005296 0.886896926 0.994168687 1.096092601 1.079574131 0.827127185 1 20.01137244 QCEGITS(ph)PEGSK ddPTM_HeLa_A485_30min_R1 1 QCEGITSPEGSK 12 0 Q9Y570-4;Q9Y570;Q9Y570-2 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 QCEGIT(0.185)S(0.815)PEGSK 228.9 2.11E-23 333470000 673540 593310 431750 861170 868650 589550 924240 897810 454930 938280 TRUE FALSE FALSE 823366.6493 662692.4434 591472.2916 908213.5365 782164.156 620417.9264 726768.5737 677620.6898 546230.2781 704384.0638 1.168917203 0.940811238 0.83970141 1.289372635 1.110422845 0.88079495 1.031778842 0.962004572 0.775472226 1 19.42600274 -6.260116529 24.94899037 0.933995949 1.062086738 0.219736453 0.131237809 221.5490093 4178451.263 0.046627713 0.044183538 5.49E-07 6.260116529 0.12809079 QCGKAFKQS(ph)SHLNK ddPTM_HeLa_A485_30min_R1 1 QCGKAFKQSSHLNK 14 2 Q3SXZ3-2;Q3SXZ3 Q3SXZ3-2 ZNF718 Zinc finger protein 718 1 0 QCGKAFKQS(0.5)S(0.5)HLNK 52.522 0.021313 429800000 336550 424320 338290 130870 557050 562890 473070 721430 415090 175520 TRUE FALSE FALSE 411414.3864 473940.5329 463437.5484 138019.0967 501588.1461 592362.05 371994.7299 544498.1613 498394.7556 131766.0942 3.122308428 3.596832218 3.517122908 1.047455323 3.806655643 4.495557477 2.823144543 4.132308578 3.782420345 1 17.00761966 QCGKAFKQS(ph)SHLNK ddPTM_HeLa_A486_30min_R1 2 QCGKAFKQSSHLNK 14 2 Q3SXZ3-2;Q3SXZ3 Q3SXZ3-2 ZNF718 Zinc finger protein 718 1 0 QCGKAFKQS(0.5)S(0.5)HLNK;QCGKAFKQS(0.5)S(0.5)HLNK ; 75.574 0.0033071 1105090000 1191070 1471120 1015800 65639 1824060 1230710 890380 1184710 1235000 353620 TRUE FALSE FALSE 1107582.144 1354543.093 1409144.964 152810.9092 1595269.386 1078877.513 667597.5065 914977.395 1342050.794 265071.2503 4.178431808 5.110109421 5.316098831 0.57648994 6.01826635 4.070141563 2.518558711 3.4518168 5.062981341 1 18.01602068 -10.82375369 2.706352113 1.69E-08 3.999122532 0.269511095 1.497353603 39971931.23 25604632.27 259440606.6 0.37869471 1.50E-11 10.82375369 3.999122515 QCRT(ph)PPQQK ddPTM_HeLa_A485_30min_R1 1 QCRTPPQQK 9 1 G3V1S3;Q6ZUT9;Q6ZUT9-2 G3V1S3 DENND5B DENN domain-containing protein 5B 1 0 QCRT(1)PPQQK 65.305 0.024829 109000000 132880 151470 116770 169360 187960 146690 209010 230660 139820 224410 TRUE FALSE FALSE 162438.6976 169183.0989 159968.0822 178611.708 169246.0424 154370.4616 164353.306 174090.2733 167880.5915 168468.717 0.96420689 1.004240443 0.949541761 1.06020697 1.004614064 0.916315292 0.975571661 1.033368547 0.996508993 1 17.3621212 -7.240781695 24.33541938 1.011204084 0.983038837 0.105780603 0.036996145 1375.707477 1620629.765 0.018218703 0.010502096 5.74E-08 7.240781695 -0.028165247 QCRT(ph)PPQQK ddPTM_HeLa_A486_30min_R1 2 QCRTPPQQK 9 1 G3V1S3;Q6ZUT9;Q6ZUT9-2 G3V1S3 DENND5B DENN domain-containing protein 5B 1 0 QCRT(1)PPQQK;QCRT(1)PPQQK ; 69.815 0.017847 181260000 256430 239550 189465 124137 290710 301810 343090 337220 238040 369970 TRUE FALSE FALSE 238455.5812 220567.1856 262830.922 288997.2095 254246.441 264575.7508 257245.2532 260442.3675 258673.4989 277327.1039 0.859835111 0.795332236 0.947728939 1.042080653 0.916774587 0.95402053 0.927587854 0.939116169 0.932737894 1 18.0812291 -4.773562353 23.28242452 0.955704333 0.827583703 0.647662323 0.038312419 50.59307822 97166.54336 0.010010087 0.02113856 1.68E-05 4.773562353 -0.128120629 QDAKDPTSLLGVLQAEADS(ph)TSEGLEDAVHSR ddPTM_HeLa_A485_30min_R1 3 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 QDAKDPTSLLGVLQAEADS(0.871)T(0.127)S(0.002)EGLEDAVHSR;QDAKDPTSLLGVLQAEADS(0.976)T(0.024)S(0.001)EGLEDAVHSR;QDAKDPTSLLGVLQAEADS(0.752)T(0.219)S(0.03)EGLEDAVHSR ;; 191.61 1.67E-21 219705000 159779 184804 134285 152393 235925 180258 304443 351559 158133 221548 TRUE FALSE FALSE 195321.2873 206415.2202 183962.6096 160717.8437 212435.4786 189696.0301 239396.266 265338.604 189868.8426 166320.1609 1.174369278 1.241071552 1.106075226 0.966316067 1.277268357 1.140547419 1.439370096 1.595348409 1.141586454 1 17.34360353 -6.744818387 24.95031628 1.343688601 1.150348813 0.118578009 0.170966431 352.0620305 528491.9521 0.064134226 0.049538735 1.80E-07 6.744818387 -0.193339788 QDAKDPTSLLGVLQAEADS(ph)TSEGLEDAVHSR ddPTM_HeLa_A486_30min_R1 5 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 QDAKDPTSLLGVLQAEADS(0.323)T(0.323)S(0.323)EGLEDAVHS(0.032)R;QDAKDPTSLLGVLQAEADS(0.73)T(0.218)S(0.052)EGLEDAVHSR;QDAKDPTSLLGVLQAEADS(0.852)T(0.147)S(0.001)EGLEDAVHSR;QDAKDPTSLLGVLQAEADS(0.83)T(0.14)S(0.031)EGLEDAVHSR;QDAKDPTSLLGVLQAEADS(0.997)T(0.003)SEGLEDAVHSR ;;;; 271.63 1.47E-77 370445000 331343 319219 204734.3 135025.5 355213 301507 402682 385715 238931.1 356959 TRUE FALSE FALSE 308117.5668 293922.9239 284012.9039 314346.1878 310658.8733 264310.1318 301926.7045 297896.1146 259641.8401 267574.143 1.151522204 1.098472822 1.061436284 1.174800316 1.161019783 0.98780147 1.128385206 1.113321756 0.970354748 1 18.02957918 -7.75872713 24.99921699 0.985177335 1.10807319 0.480520038 0.051725887 58.03950847 535001.1148 0.039280287 0.013321452 1.74E-08 7.75872713 0.122895855 QDAKDPTSLLGVLQAEADST(ph)SEGLEDAVHSR ddPTM_HeLa_A485_30min_R1 1 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 QDAKDPTSLLGVLQAEADS(0.02)T(0.636)S(0.343)EGLEDAVHSR 162.75 3.16E-14 41312000 34609 35213 25048 32837 42606 37796 48486 57077 29544 44769 TRUE FALSE FALSE 42307.65265 39330.85404 34314.29753 34630.80216 38363.99704 39774.94012 38126.57001 43078.77626 35473.20981 33608.91221 1.258822433 1.17025073 1.020988044 1.030405327 1.141482854 1.183464072 1.134418447 1.281766455 1.055470334 1 15.03655623 -11.73058888 1.033471223 0.197633578 1.141017783 0.204884928 0.083867899 28191.64245 1370.714169 51980.16459 0.026684847 1.86E-12 11.73058888 0.943384205 QDAKDPTSLLGVLQAEADST(ph)SEGLEDAVHSR ddPTM_HeLa_A486_30min_R1 1 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 QDAKDPTSLLGVLQAEADS(0.018)T(0.897)S(0.085)EGLEDAVHSR 151.72 1.13E-09 39982000 34962 33236 19753 13341 34790 29546 39103 41260 25543 42120 TRUE FALSE FALSE 32511.34434 30602.25832 27401.8906 31058.52222 30426.3138 25900.91492 29319.01581 31865.9987 27757.08781 31572.87784 1.029723819 0.969257806 0.867893346 0.983708941 0.963685159 0.820353312 0.928613982 1.009283945 0.87914342 1 14.94639815 -4.430463074 4.04261851 0.930180908 1.025514689 0.209552554 0.058204666 0.355871422 9.78116526 0.014588908 0.068520468 3.71E-05 4.430463074 0.095333781 QDAKDPTSLLGVLQAEADSTS(ph)EGLEDAVHSR ddPTM_HeLa_A485_30min_R1 1 QDAKDPTSLLGVLQAEADSTSEGLEDAVHSR 31 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 QDAKDPTSLLGVLQAEADST(0.031)S(0.969)EGLEDAVHSR 165.52 1.38E-14 39583000 37714 43285 36053 33840 50360 44444 63471 72241 32816 47523 TRUE FALSE FALSE 46103.34919 48346.80422 49390.50499 35688.59351 45345.98158 46771.01912 49909.90234 54523.78148 39401.87019 35676.3907 1.292264949 1.355148413 1.384403075 1.000342042 1.27103613 1.310979564 1.398961648 1.528287487 1.104424226 1 15.12268205 -7.98730166 23.4644248 0.999999951 1.311807984 0.423308763 0.126753134 84.30745385 155784.9948 0.12950806 0.033438837 1.03E-08 7.98730166 0.311808034 QDDGSSS(ph)ASPSVQGAPR ddPTM_HeLa_A485_30min_R1 1 QDDGSSSASPSVQGAPR 17 0 Q9NQA3 Q9NQA3 WASH6P WAS protein family homolog 6 1 0 QDDGS(0.003)S(0.014)S(0.441)AS(0.441)PS(0.101)VQGAPR 111.78 0.00014342 589420000 396240 467070 412880 680280 599650 472050 618260 649140 460310 909480 TRUE FALSE FALSE 484382.221 521689.7735 565621.4934 717441.9738 539946.7405 496765.8081 486163.7003 489937.3972 552689.9948 682763.3737 0.709443769 0.764085763 0.828429753 1.050791535 0.790825579 0.727581219 0.712052988 0.717580081 0.809489812 1 19.38102614 -5.984495599 24.99878557 0.76934173 0.84327403 0.01470268 0.114011185 666.0254844 1073871.909 0.036126558 0.040950882 1.04E-06 5.984495599 0.0739323 QDDGSSSAS(ph)PSVQGAPR ddPTM_HeLa_A485_30min_R1 1 QDDGSSSASPSVQGAPR 17 0 Q9NQA3 Q9NQA3 WASH6P WAS protein family homolog 6 1 0 QDDGSSS(0.096)AS(0.9)PS(0.005)VQGAPR 260.09 1.46E-51 680610000 436570 454960 424090 855570 623400 439430 638960 620010 439730 1001300 TRUE FALSE FALSE 533683.4904 508163.6144 580978.5389 902307.6227 561332.1071 462437.8753 502440.9762 467951.5754 527979.7776 751694.3376 0.709974073 0.676024268 0.772891999 1.200365065 0.746755801 0.615194039 0.668411282 0.622529068 0.702386264 1 19.51978661 -5.989963006 24.99897031 0.693247289 0.842112662 0.088576016 0.168544711 434.5370654 1082286.692 0.053802426 0.060940877 1.02E-06 5.989963006 0.148865374 QDDGSSSAS(ph)PSVQGAPR ddPTM_HeLa_A486_30min_R1 2 QDDGSSSASPSVQGAPR 17 0 Q9NQA3 Q9NQA3 WASH6P WAS protein family homolog 6 1 0 QDDGSSS(0.013)AS(0.984)PS(0.004)VQGAPR;QDDGSSS(0.025)AS(0.969)PS(0.006)VQGAPR ; 313.67 4.10E-79 888990000 976140 1097420 786890 702560 1195060 1074240 1404150 1319630 867560 1551160 TRUE FALSE FALSE 907717.6268 1010456.442 1091594.882 1635595.185 1045164.431 941711.1909 1052816.818 1019179.056 942760.7993 1162739.44 0.780671573 0.869030849 0.938812983 1.406673868 0.898881035 0.809907326 0.905462378 0.876532628 0.810810029 1 20.14909641 -5.975836709 24.98466437 0.872161955 1.006185299 0.108354909 0.161154644 507.5486062 524799.0002 0.053003925 0.060098164 1.06E-06 5.975836709 0.134023344 QDDS(ph)PPRPIIGPALPPGFIK ddPTM_HeLa_A485_30min_R1 2 QDDSPPRPIIGPALPPGFIK 20 1 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 0 QDDS(1)PPRPIIGPALPPGFIK;QDDS(1)PPRPIIGPALPPGFIK ; 246 9.38E-47 1614950000 1173350 1305120 971390 1293800 1382580 1347380 1778520 1847220 1132880 1710380 TRUE FALSE FALSE 1434357.659 1457742.431 1330747.584 1364477.018 1244925.481 1417926.733 1398524.673 1394186.399 1360238.625 1284013.743 1.117089024 1.135301268 1.036396683 1.062665431 0.969557754 1.10429249 1.089182012 1.08580333 1.059364537 1 20.29222921 -3.639863009 0.008196919 1.38E-07 2.19152529 0.211506367 0.043860088 21952.80002 23.56239317 2930.985945 3381.3326 0.000229159 3.639863009 2.191525152 QDDS(ph)PPRPIIGPALPPGFIK ddPTM_HeLa_A486_30min_R1 2 QDDSPPRPIIGPALPPGFIK 20 1 A0A0A0MRI1;Q8IXQ4;Q8IXQ4-4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 0 QDDS(1)PPRPIIGPALPPGFIK;QDDS(1)PPRPIIGPALPPGFIK ; 187.29 2.00E-19 1348030000 1348280 1349580 806480 505970 1192670 1420280 1558730 1500780 1039320 1599680 TRUE FALSE FALSE 1253772.535 1242634.366 1118770.654 1177923.73 1043074.207 1245060.294 1168719.267 1159085.156 1129409.094 1199109.716 1.045586169 1.036297471 0.933001075 0.982331904 0.869873869 1.038320579 0.974655823 0.966621436 0.941873024 1 20.19353224 -4.726952503 11.94268391 0.962571028 1.041052507 0.353305497 0.041988677 0.875874319 298.8952664 0.01039546 0.027346547 1.88E-05 4.726952503 0.078481479 QDEHGYISR ddPTM_HeLa_A485_30min_R1 9 QDEHGYISR 9 0 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ;;;;;;;; ;;;;;;;; 141.71 0.00014054 4466813000 2411438 3398760 3153660 2583466 3989580 3147120 4014720 4124350 2894080 3590870 FALSE FALSE TRUE 2947854.064 3796215.417 4320330.069 2724594.206 3592363.407 3311898.337 3156942.275 3112846.696 3474895.31 2695732.194 1.093526304 1.408231658 1.602655515 1.010706558 1.332611383 1.228570978 1.171088983 1.154731432 1.289035802 1 21.36224575 -10.017233 0.163097799 0.750463832 1.378072966 0.200923089 0.158249458 38.91000052 1.343010618 5.142128723 0.868904185 9.61E-11 10.017233 0.627609134 QDEHGYISR ddPTM_HeLa_A486_30min_R1 6 QDEHGYISR 9 0 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ;;;;; ;;;;; 134.3 0.00069403 2845062000 2034955 2136344 1836914 686401.7 2777264 2068189 2387038 2427068 1902901 2365594 FALSE FALSE TRUE 1892315.163 1967052.321 2548216.295 1597977.846 2428913.652 1813036.869 1789775.845 1874477.599 2067845.991 1773233.865 1.067154875 1.109302253 1.437044682 0.901165874 1.369764981 1.022446562 1.009328707 1.057095534 1.166143977 1 20.75795139 QDIAFAYQR ddPTM_HeLa_A485_30min_R1 2 QDIAFAYQR 9 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4;H0YKV8 P07355 ANXA2 Annexin A2;Annexin 0 0 ; ; 139.78 0.00068825 140475000 93957 127394 90414 101827 113943 128499 173652 173934 109956 181428 FALSE FALSE TRUE 114857.4105 142291.6201 123861.901 107389.5512 102598.4348 135227.0089 136549.8316 131276.4138 132023.1606 136201.3385 0.843291349 1.044715284 0.909402965 0.78846179 0.75328507 0.992846402 1.002558661 0.963840849 0.969323518 1 17.05538136 QDIMPEVDKQSGS(ph)PESR ddPTM_HeLa_A485_30min_R1 2 QDIMPEVDKQSGSPESR 17 1 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 QDIMPEVDKQS(0.068)GS(0.928)PES(0.004)R;QDIMPEVDKQS(0.013)GS(0.987)PESR ; 168.75 2.27E-12 792670000 585790 526010 430950 1003180 715630 616960 965380 738120 500650 1409750 TRUE FALSE FALSE 716096.9645 587522.2938 590376.3383 1057981.183 644379.3645 649263.0716 759118.6766 557094.9127 601125.8628 1058325.27 0.676632209 0.555143405 0.557840161 0.999674877 0.608867031 0.613481592 0.717282955 0.526392905 0.567997269 1 20.01335167 -11.05199939 2.779119498 1.490370315 0.648488828 0.397436075 0.130371995 10590813.56 7230421.092 33195230.24 0.033604345 8.87E-12 11.05199939 -0.841881487 QDIMPEVDKQSGS(ph)PESR ddPTM_HeLa_A486_30min_R1 4 QDIMPEVDKQSGSPESR 17 1 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 QDIMPEVDKQS(0.005)GS(0.995)PESR;QDIMPEVDKQS(0.068)GS(0.932)PESR;QDIMPEVDKQS(0.014)GS(0.986)PESR;QDIMPEVDKQS(0.015)GS(0.984)PES(0.001)R ;;; 152.47 1.82E-08 1401960000 1512650 1441120 847560 1079820 1598800 1822640 2211410 2068300 1239830 2293860 TRUE FALSE FALSE 1406621.046 1326920.403 1175757.93 2513875.531 1398263.596 1597781.208 1658091.828 1597393.241 1347299.463 1719462.525 0.818058565 0.771706497 0.683793868 1.462012399 0.813198063 0.929232934 0.964308209 0.929007301 0.783558492 1 20.71352624 QDKPLS(ph)PAGSSQEAADTPDTR ddPTM_HeLa_A486_30min_R1 1 QDKPLSPAGSSQEAADTPDTR 21 1 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 1 0 QDKPLS(1)PAGSSQEAADTPDTR 153.97 3.95E-10 289630000 130990 126500 82380 63590 117250 172750 198620 158030 128480 211070 TRUE FALSE FALSE 121808.2774 116475.6793 114279.7422 148040.7337 102543.4117 151437.8614 148923.1752 122050.0188 139616.7498 158216.6982 0.769882565 0.73617817 0.722298869 0.935683372 0.648120033 0.957154732 0.941260796 0.771410478 0.882440042 1 17.27154234 -6.279236902 24.99808448 0.898091838 0.768369404 0.409452761 0.088116601 971.8658379 1365061.21 0.030784328 0.027204594 5.26E-07 6.279236902 -0.129722435 QDKPMDTS(ph)VLS(ph)EEGGEPFQK ddPTM_HeLa_A485_30min_R1 2 QDKPMDTSVLSEEGGEPFQK 20 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 QDKPMDT(0.12)S(0.88)VLS(1)EEGGEPFQK;QDKPMDT(0.326)S(0.676)VLS(0.998)EEGGEPFQK ; 112.39 2.53E-05 408070000 573950 387530 298700 902070 624370 512640 901070 727250 425340 1157630 TRUE FALSE FALSE 701623.1974 432848.2624 409201.5599 951347.7999 562205.5305 539481.0377 708549.0334 548890.7972 510701.8366 869054.1456 0.807341178 0.498068233 0.470858533 1.094693357 0.646916574 0.620768039 0.815310573 0.631595626 0.587652495 1 19.72908654 -10.48526944 3.108767338 1.007887811 0.68523014 0.229245184 0.172771024 91642316.17 114388105.4 6254913.228 0.044869802 3.27E-11 10.48526944 -0.322657672 QDKPMDTS(ph)VLS(ph)EEGGEPFQK ddPTM_HeLa_A486_30min_R1 1 QDKPMDTSVLSEEGGEPFQK 20 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 QDKPMDT(0.146)S(0.854)VLS(1)EEGGEPFQK 109.26 3.25E-05 202310000 338330 338510 141850 172750 310040 410160 490140 437770 226370 467260 TRUE FALSE FALSE 314614.8141 311685.2348 196778.1189 402170.7303 271151.8922 359558.6294 367501.7878 338099.3275 245991.9339 350255.0546 0.898244893 0.889880762 0.561813788 1.148222488 0.774155543 1.026562285 1.049240498 0.965294642 0.702322295 1 18.41804635 -5.269214426 24.99886435 0.950526914 0.793969906 0.210122103 0.149651604 971.6820288 3124219.071 0.041316186 0.062592193 5.38E-06 5.269214426 -0.156557008 QDKPMDTSVLS(ph)EEGGEPFQK ddPTM_HeLa_A485_30min_R1 4 QDKPMDTSVLSEEGGEPFQK 20 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDTSVLS(1)EEGGEPFQK ;;; 253.69 7.75E-59 2583770000 1569820 1259360 842380 2423140 1885950 1564120 2507460 2109380 1454550 3294740 TRUE FALSE FALSE 1919021.043 1406631.197 1154011.416 2555510.002 1698178.196 1646014.905 1971720.687 1592051.248 1746464.843 2473421.953 0.77585672 0.568698436 0.466564718 1.033188049 0.686570358 0.665480834 0.79716309 0.643663426 0.706092562 1 21.23807695 -11.34537225 1.939441261 2.390388083 0.702681238 0.27920257 0.142252171 8574557.138 918034.5582 52224143.42 0.038269463 4.51E-12 11.34537225 -1.687706845 QDKPMDTSVLS(ph)EEGGEPFQK ddPTM_HeLa_A486_30min_R1 4 QDKPMDTSVLSEEGGEPFQK 20 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDT(0.001)S(0.001)VLS(0.998)EEGGEPFQK ;;; 229.98 3.47E-36 2435820000 2764360 2695980 1113237 1260769 2327630 3179210 3666750 3574650 2183520 3913570 TRUE FALSE FALSE 2570592.639 2482340.726 1544312.18 2935133.948 2035676.941 2786991.394 2749290.367 2760780.229 2372789.272 2933586.599 0.876262743 0.846179461 0.52642461 1.00052746 0.693920862 0.950028677 0.937177163 0.941093824 0.808835598 1 21.48423415 -6.281422957 24.66101661 0.924354809 0.789059824 0.238219285 0.124010036 1071.839973 1322714.756 0.042424496 0.037464317 5.23E-07 6.281422957 -0.135294985 QDKPMDTSVLS(ph)EEGGEPFQKK ddPTM_HeLa_A485_30min_R1 2 QDKPMDTSVLSEEGGEPFQKK 21 2 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QDKPMDTSVLS(1)EEGGEPFQKK;QDKPMDTS(0.009)VLS(0.991)EEGGEPFQKK ; 174.31 2.10E-14 897010000 476120 300640 172741 668020 470780 506220 922230 781590 353750 919400 TRUE FALSE FALSE 582031.2514 335797.2328 236645.0843 704512.2411 423907.4902 532724.8964 725188.0266 589903.827 424744.3802 690210.5003 0.843266295 0.486514234 0.342859293 1.020720839 0.614171314 0.771829603 1.050676607 0.854672345 0.615383829 1 19.3966769 -5.264272878 24.99761423 0.836404725 0.550443374 0.337994174 0.185017101 289.0335487 2549909.441 0.051790669 0.080838843 5.44E-06 5.264272878 -0.285961351 QDKPMDTSVLS(ph)EEGGEPFQKK ddPTM_HeLa_A486_30min_R1 2 QDKPMDTSVLSEEGGEPFQKK 21 2 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QDKPMDTSVLS(1)EEGGEPFQKK;QDKPMDTSVLS(1)EEGGEPFQKK ; 231.21 1.40E-36 1832400000 903630 723180 222827 492800 689940 1032800 1305080 1308520 551020 1510220 TRUE FALSE FALSE 840290.2034 665872.583 309111.5819 1147263.305 603401.2918 905383.6367 978535.1803 1010598.561 598782.8573 1132051.082 0.742272338 0.588200121 0.273054447 1.013437753 0.533015958 0.799772776 0.864391365 0.892714628 0.528936253 1 20.11050763 -5.267658847 24.99923413 0.791112529 0.539878084 0.297429371 0.189386873 648.9488549 2608459.393 0.051718626 0.078931406 5.40E-06 5.267658847 -0.251234445 QDLESSVQS(ph)SPHDSIAIIPPPQSTKPGR ddPTM_HeLa_A485_30min_R1 2 QDLESSVQSSPHDSIAIIPPPQSTKPGR 28 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 QDLES(0.093)S(0.093)VQS(0.45)S(0.363)PHDS(0.001)IAIIPPPQSTKPGR;QDLES(0.024)S(0.024)VQS(0.598)S(0.352)PHDS(0.002)IAIIPPPQSTKPGR ; 107.94 0.00020935 1100380000 194897 311180 274440 83306 445480 207885 257330 290990 285900 218700 TRUE FALSE FALSE 238251.1653 347569.7941 375966.7764 87856.79584 401126.447 218769.5371 202349.3433 219624.2462 343277.5076 164182.1149 1.45113958 2.116977202 2.289937468 0.535117945 2.443179924 1.33248093 1.232468856 1.33768679 2.090833754 1 17.32493745 QDLESSVQS(ph)SPHDSIAIIPPPQSTKPGR ddPTM_HeLa_A486_30min_R1 1 QDLESSVQSSPHDSIAIIPPPQSTKPGR 28 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 QDLES(0.089)S(0.089)VQS(0.458)S(0.363)PHDS(0.001)IAIIPPPQSTKPGR 87.712 0.0014291 211880000 76658 85145 76121 9238.4 108570 61201 73672 74180 83286 24655 TRUE FALSE FALSE 71284.67006 78397.80011 105597.0898 21507.46208 94952.13822 53650.64287 55238.48638 57290.83334 90505.29754 18481.22752 3.857139358 4.242023427 5.713748703 1.163746405 5.137761445 2.902980487 2.988897047 3.099947407 4.89714752 1 14.17377296 -10.82641216 2.574154269 0.019713415 3.742920015 0.30552832 1.255537316 45127715.15 34888704.9 275882663.2 0.299070185 1.49E-11 10.82641216 3.7232066 QDLESSVQSS(ph)PHDSIAIIPPPQSTKPGR ddPTM_HeLa_A485_30min_R1 1 QDLESSVQSSPHDSIAIIPPPQSTKPGR 28 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 QDLESSVQS(0.2)S(0.799)PHDSIAIIPPPQSTKPGR 135.84 1.50E-06 528860000 262220 423840 378950 66989 576760 243100 334850 345980 346320 222080 TRUE FALSE FALSE 320549.9344 473404.4011 519139.3744 70648.43944 519335.7493 255828.3401 263306.562 261127.8625 415823.2474 166719.5431 1.922689617 2.839525543 3.113848352 0.423756196 3.115026227 1.534483213 1.579338314 1.566270263 2.494148195 1 17.3470637 -3.70004945 0.070300031 2.74E-10 5.011719848 0.150717552 0.797478643 263.8885507 2.491074649 47.33385615 154.5958151 0.000199504 3.70004945 5.011719847 QDLESSVQSS(ph)PHDSIAIIPPPQSTKPGR ddPTM_HeLa_A486_30min_R1 1 QDLESSVQSSPHDSIAIIPPPQSTKPGR 28 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 QDLES(0.004)S(0.004)VQS(0.418)S(0.573)PHDSIAIIPPPQSTKPGR 119.99 4.49E-05 593760000 329690 342150 341080 3394.1 436390 249160 294540 291780 373960 75507 TRUE FALSE FALSE 306580.4335 315036.7879 473155.3104 7901.636328 381653.897 218421.1725 220842.9767 225348.0635 406375.1539 56599.55573 5.41665795 5.566064677 8.359700078 0.139605978 6.743054642 3.859061607 3.901850002 3.981445801 7.179829393 1 15.78850311 -5.217750549 24.99996393 4.07915741 6.3593319 0.227490362 2.175330592 766.8741681 438825.5905 0.559821343 0.969632859 6.06E-06 5.217750549 2.28017449 QDLPNAMNAAEITDKLGLHSLR ddPTM_HeLa_A485_30min_R1 1 QDLPNAMNAAEITDKLGLHSLR 22 1 P84077;P61204;P61204-2;H0YGG7 P84077 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 0 0 138.35 1.73E-06 153060000 64239 70913 58866 74505 100000 71672 101630 99100 68125 107740 FALSE FALSE TRUE 78528.74393 79205.65849 80642.98302 78575.01949 90043.64888 75424.63509 79915.92026 74795.56962 81797.06262 80882.40081 0.970900259 0.97926938 0.997039927 0.971472393 1.113266273 0.932522209 0.988050793 0.924744677 1.011308539 1 16.3035382 -9.439758319 13.56539666 1.000001917 0.987414383 0.005690943 0.049027066 0 0 0.046714773 0.011329997 3.63E-10 9.439758319 -0.012587534 QDPGSAPS(ph)PLSLLHPGVAAK ddPTM_HeLa_A485_30min_R1 2 QDPGSAPSPLSLLHPGVAAK 20 0 Q13886 Q13886 KLF9 Krueppel-like factor 9 1 0 QDPGS(0.001)APS(0.999)PLSLLHPGVAAK;QDPGS(0.042)APS(0.958)PLSLLHPGVAAK ; 185.7 3.50E-19 214416000 170248 189706 149543 246750 222543 228545 283800 298460 172381 315030 TRUE FALSE FALSE 208119.0803 211890.4665 204865.1787 260229.3277 200385.8375 240511.2628 223163.8116 225262.217 206976.2855 236498.8187 0.880000507 0.895947251 0.866241869 1.10034092 0.847301642 1.016966022 0.94361491 0.952487705 0.875168369 1 17.85147345 QDPVTYISET(ph)DEEDDFMCKK ddPTM_HeLa_A486_30min_R1 1 QDPVTYISETDEEDDFMCKK 20 1 P35251-2;P35251;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 0 QDPVT(0.047)Y(0.004)IS(0.304)ET(0.645)DEEDDFMCKK 103.53 6.47E-05 352130000 51857 57466 22935 28878 42460 59335 83090 65949 38136 89295 TRUE FALSE FALSE 48222.09209 52912.18487 31816.04622 67229.44341 37134.27088 52014.85097 62300.00316 50933.85236 41441.65919 66934.95079 0.720432174 0.790501588 0.47532785 1.004399684 0.554781477 0.777095529 0.930754448 0.760945541 0.619133333 1 16.03047211 -6.513066292 24.71487312 0.814378249 0.711921723 0.105172837 0.16168945 1113.632012 2804947.722 0.05725756 0.04708382 3.07E-07 6.513066292 -0.102456526 QDPVVHLS(ph)PNK ddPTM_HeLa_A485_30min_R1 3 QDPVVHLSPNK 11 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 QDPVVHLS(1)PNK;QDPVVHLS(1)PNK;QDPVVHLS(1)PNK ;; 160.47 5.60E-08 725570000 1561450 1087789 883236 2451810 1623590 1192082 1831120 1356450 1184070 3071560 TRUE FALSE FALSE 1908789.166 1214996.461 1209981.751 2585746.172 1461939.679 1254497.57 1439886.253 1023778.511 1421701.988 2305876.62 0.827793278 0.526913041 0.524738288 1.121372301 0.634006029 0.544043666 0.624442019 0.443986682 0.616555967 1 21.13688389 -10.01847703 4.719807381 1.000006973 0.647383995 0.242720468 0.184519106 59966476.67 63643774.81 4172.951619 0.045999025 9.58E-11 10.01847703 -0.352622978 QDPVVHLS(ph)PNK ddPTM_HeLa_A486_30min_R1 3 QDPVVHLSPNK 11 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 QDPVVHLS(1)PNK;QDPVVHLS(1)PNK;QDPVVHLS(1)PNK ;; 157.68 1.54E-07 818360000 2140740 2207810 1031340 1015700 1687140 2622220 2838000 2535310 1799950 3365930 TRUE FALSE FALSE 1990685.181 2032855.095 1430702.468 2364600.931 1475523.169 2298717.157 2127902.383 1958075.258 1955971.115 2523079.219 0.78899036 0.80570403 0.567046194 0.93718854 0.58481048 0.911076093 0.843375177 0.776065707 0.775231749 1 21.26675407 -6.310981748 24.99946997 0.846042921 0.742285899 0.213755538 0.117280851 699.8407211 353143.1875 0.039305099 0.034663916 4.89E-07 6.310981748 -0.103757022 QDRT(ph)PLTK ddPTM_HeLa_A486_30min_R1 1 QDRTPLTK 8 1 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 QDRT(1)PLTK 70.1 0.01982 172540000 236350 263350 164010 110660 286350 252450 309150 315110 220240 323920 TRUE FALSE FALSE 219783.0855 242481.1869 227519.0643 257622.0724 250433.3129 221305.2857 231797.4001 243366.3318 239330.5805 242808.3236 0.905171133 0.998652696 0.937031568 1.061010053 1.031403327 0.911440277 0.954651787 1.002298143 0.985677002 1 17.88945835 -4.255636891 24.14949359 0.985760304 0.905171077 0.258047849 0.041537931 614.4852617 2557312.548 0.010803398 0.093049234 5.55E-05 4.255636891 -0.080589227 QDS(ph)DSDVVDIEEAEHDFMGEAHPVVFSR ddPTM_HeLa_A485_30min_R1 8 QDSDSDVVDIEEAEHDFMGEAHPVVFSR 28 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 QDS(0.989)DS(0.011)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.977)DS(0.023)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.998)DS(0.002)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.92)DS(0.08)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.93)DS(0.07)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.997)DS(0.003)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.766)DS(0.234)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.996)DS(0.004)DVVDIEEAEHDFMGEAHPVVFSR ;;;;;;; 296.58 2.83E-92 814660000 100180.3 114581.5 99076.5 119851.4 126257.6 118584 142518.4 139497.1 106290.6 165559.4 TRUE FALSE FALSE 122465.0621 127980.8097 135729.0203 126398.5785 113686.95 124792.8749 112068.1796 105285.2175 127622.1485 124288.4885 0.985329081 1.029707669 1.092048201 1.016977357 0.914702169 1.004058191 0.90167787 0.847103531 1.026821953 1 16.92333316 -5.647983764 5.463596174 0.942070435 1.037928091 0.335761784 0.056240372 0.22091756 9.717203588 0.016788139 0.0217429 2.25E-06 5.647983764 0.095857656 QDS(ph)DSDVVDIEEAEHDFMGEAHPVVFSR ddPTM_HeLa_A486_30min_R1 5 QDSDSDVVDIEEAEHDFMGEAHPVVFSR 28 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 QDS(0.997)DS(0.003)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.993)DS(0.007)DVVDIEEAEHDFMGEAHPVVFSR;QDS(0.998)DS(0.002)DVVDIEEAEHDFMGEAHPVVFSR;QDS(1)DSDVVDIEEAEHDFMGEAHPVVFSR;QDS(0.997)DS(0.003)DVVDIEEAEHDFMGEAHPVVFSR ;;;; 301.68 1.56E-92 652729000 173014 184037 111417 70206.8 163073 172990 199461 191949 149619 212225 TRUE FALSE FALSE 160886.612 169453.2379 154560.6463 163444.9785 142618.8637 151648.2526 149553.7481 148246.4029 162588.0954 159082.4786 1.011340868 1.065191084 0.971575547 1.027422881 0.896508936 0.953268103 0.940101948 0.931883914 1.022036473 1 17.27941542 -5.312999411 1.722673717 0.954964227 1.030746764 0.288513274 0.041564569 0.408194862 2.363203751 0.012805473 0.025740859 4.86E-06 5.312999411 0.075782537 QDS(ph)LVINLNR ddPTM_HeLa_A485_30min_R1 2 QDSLVINLNR 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 0 QDS(1)LVINLNR;QDS(1)LVINLNR ; 153.81 2.61E-06 85029000 123779 125139 112986 149910 161298 108836 150016 134276 118617 204382 TRUE FALSE FALSE 151313.2115 139772.9175 154784.2231 158099.2037 145238.6048 114534.4847 117963.8561 101344.6005 142422.3439 153433.3288 0.98618216 0.910968423 1.008804439 1.030409788 0.946590978 0.74647722 0.768828109 0.660512297 0.928236029 1 17.22725237 -6.152928964 5.08969221 0.796892537 0.981131188 0.397176811 0.094287057 0.201810354 7.842652058 0.030451276 0.030493461 7.03E-07 6.152928964 0.184238651 QDS(ph)LVINLNR ddPTM_HeLa_A486_30min_R1 2 QDSLVINLNR 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 0 QDS(1)LVINLNR;QDS(1)LVINLNR ; 134.61 5.20E-05 31275000 158957 182161 117102 61374 175687 170489 203525 187400 139043 198100 TRUE FALSE FALSE 147814.9352 167725.8989 162447.0305 142881.7737 153650.6982 149455.8006 152600.8923 144733.1109 151095.3592 148494.4706 0.995423833 1.12950939 1.093960131 0.962202654 1.034723365 1.006473844 1.027653701 0.974670035 1.017515054 1 17.18004969 -5.248020612 24.97075728 1.004718204 1.07861895 0.417255355 0.037513375 683.5479867 1272001.94 0.009769558 0.01679635 5.65E-06 5.248020612 0.073900747 QDS(ph)RGSPLLGPVVPGPSPIPSVTEK ddPTM_HeLa_A485_30min_R1 2 QDSRGSPLLGPVVPGPSPIPSVTEK 25 1 P49454 P49454 CENPF Centromere protein F 1 0 QDS(0.5)RGS(0.5)PLLGPVVPGPSPIPSVTEK;QDS(0.5)RGS(0.5)PLLGPVVPGPSPIPSVTEK ; 80.002 1.42E-05 0 38674 51919.4 35198 48133.4 67466.7 53535 82481.5 88882.5 45220.4 50532.9 TRUE FALSE FALSE 47276.89788 57990.92219 48219.20491 50762.80576 60749.47846 56338.00982 64858.65371 67083.92751 54295.71949 37935.97802 1.246228524 1.528652356 1.271067926 1.338117756 1.601368454 1.485081254 1.709687139 1.768345803 1.431246071 1 15.21127911 -5.7544627 24.90542957 1.547515021 1.353708529 0.08670706 0.210804465 283.2017583 1010970.324 0.05985651 0.075562547 1.76E-06 5.7544627 -0.193806492 QDS(ph)SPHLTSQRPVDMVQLLK ddPTM_HeLa_A485_30min_R1 2 QDSSPHLTSQRPVDMVQLLK 20 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 QDS(0.499)S(0.499)PHLT(0.002)SQRPVDMVQLLK;QDS(0.5)S(0.5)PHLTSQRPVDMVQLLK ; 134.28 1.78E-07 246720000 230529 286883 266573 164753 403390 301522 366546 390870 274584 302379 TRUE FALSE FALSE 281809.3807 320431.4713 365189.4457 173753.0392 363227.0752 317309.2257 288230.4527 295008.5196 329690.4902 227001.4802 1.241442922 1.41158318 1.608753588 0.7654269 1.60010884 1.397828884 1.269729398 1.299588529 1.452371544 1 17.79234218 -10.32359771 3.292101444 0.997997488 1.338044726 0.168943304 0.225251528 34984755.21 48942739.74 683981.4619 0.055979427 4.75E-11 10.32359771 0.340047238 QDS(ph)WEVVEGLR ddPTM_HeLa_A485_30min_R1 1 QDSWEVVEGLR 11 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4;C9J8P4;C9JEF2;C9JZ19 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 QDS(1)WEVVEGLR 76.262 0.0095731 11300000 24282 24852 18623 34462 31682 28872 32831 32377 20943 39557 TRUE FALSE FALSE 29683.44713 27758.22522 25512.42267 36344.5718 28527.62884 30383.69328 25816.38865 24436.48998 25146.068 29696.16789 0.999571636 0.934740985 0.859114979 1.22388087 0.960650173 1.02315199 0.869350845 0.822883615 0.846778214 1 14.85798915 -6.76790607 24.53562118 0.869993424 0.999169044 0.244733434 0.097969882 166.5798832 632020.6035 0.040665313 0.028168013 1.71E-07 6.76790607 0.12917562 QDSDS(ph)DVVDIEEAEHDFMGEAHPVVFSR ddPTM_HeLa_A486_30min_R1 1 QDSDSDVVDIEEAEHDFMGEAHPVVFSR 28 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 QDS(0.263)DS(0.737)DVVDIEEAEHDFMGEAHPVVFSR 124.19 5.25E-06 101360000 3679.8 3368.5 2716.5 940.16 4695.5 5153.7 3840.3 4382 4754.4 4130.7 TRUE FALSE FALSE 3421.865023 3101.567792 3768.40155 2188.739993 4106.546606 4517.888893 2879.416321 3384.314258 5166.51522 3096.345834 1.105130113 1.001686491 1.217048015 0.706878401 1.326255795 1.459103452 0.929940154 1.093002668 1.668584679 1 11.5963509 QDVDLCLVSS(ph)CEYK ddPTM_HeLa_A486_30min_R1 2 QDVDLCLVSSCEYK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QDVDLCLVS(0.019)S(0.981)CEYK;QDVDLCLVS(0.256)S(0.744)CEYK ; 186.72 1.60E-17 139350000 282010 378690 188319 208520 290180 429820 466860 413900 293500 461370 TRUE FALSE FALSE 262242.5553 348681.2252 261241.1602 485445.098 253782.9186 376793.1785 350046.6901 319664.0054 318940.8163 345839.949 0.758277221 1.008215581 0.755381676 1.403669817 0.733816088 1.089501602 1.012163838 0.924311972 0.922220863 1 18.399745 -3.595778953 1.319203825 0.990240276 4.06E-09 0.123748523 0.176787026 14.52778354 6.27103316 0.047982467 29.73328502 0.000253642 3.595778953 -0.990240272 QDVDLCLVSS(ph)CEYKHPK ddPTM_HeLa_A486_30min_R1 2 QDVDLCLVSSCEYKHPK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QDVDLCLVS(0.292)S(0.708)CEYKHPK;QDVDLCLVS(0.006)S(0.994)CEYKHPK ; 178.19 6.89E-14 1783780000 2025860 2407670 1244880 1034240 2438450 2588080 3253300 3165490 1929740 2997160 TRUE FALSE FALSE 1883857.676 2216877.461 1726930.875 2407762.988 2132596.863 2268789.003 2439289.93 2444777.029 2097011.417 2246651.628 0.838517931 0.986747315 0.76866874 1.071711768 0.949233445 1.009853497 1.085744625 1.088186971 0.933394119 1 21.099345 -5.276415413 24.99852339 1.022807994 0.876854919 0.500112452 0.070691877 655.6369604 1094410.623 0.019412679 0.028920531 5.29E-06 5.276415413 -0.145953075 QDVDNASLAR ddPTM_HeLa_A485_30min_R1 2 QDVDNASLAR 10 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 169.99 7.12E-06 162899000 137703 147127 158749 141782 190473 146532 180849 161357 151701 185511 FALSE FALSE TRUE 168334.5573 164332.2228 217476.8612 149527.1916 171508.8393 154204.1889 142209.1337 121783.9428 182145.9992 139266.5218 1.208722349 1.17998368 1.561587512 1.0736765 1.231515207 1.107259569 1.021129356 0.874466751 1.307895084 1 17.08748897 -6.046630109 1.353854695 1.043884301 1.285076621 0.288040516 0.152713532 0.528534585 1.991797382 0.065066384 0.070439107 8.98E-07 6.046630109 0.24119232 QEAEDLSLSAPSSPEIS(ph)PQS(ph)SPRPHRPNNDR ddPTM_HeLa_A485_30min_R1 1 QEAEDLSLSAPSSPEISPQSSPRPHRPNNDR 31 2 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 2 0 QEAEDLSLS(0.002)APS(0.15)S(0.151)PEIS(0.675)PQS(0.553)S(0.469)PRPHRPNNDR 75.515 0.0008587 401950000 4218.2 9553.3 4657.8 5762.1 9656.9 11115 10395 10973 6210 10856 TRUE FALSE FALSE 5156.524037 10670.47533 6380.914047 6076.868933 8695.425129 11696.96421 8174.023331 8281.854545 7456.290039 8149.79899 0.632717941 1.309293069 0.78295355 0.74564648 1.066949644 1.435245732 1.002972385 1.016203535 0.914904778 1 12.99254876 -5.902543917 9.368153581 1.090340057 0.893632906 0.17844221 0.211198548 0.561990145 49.12915612 0.066524576 0.075492894 1.25E-06 5.902543917 -0.196707151 QEAGDS(ph)PPPAPGTPK ddPTM_HeLa_A485_30min_R1 2 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 0 QEAGDS(1)PPPAPGTPK;QEAGDS(1)PPPAPGTPK ; 226.08 8.58E-34 417910000 718440 720450 512440 897060 786190 695460 918330 822000 607840 1109710 TRUE FALSE FALSE 878254.4994 804700.3604 702012.8804 946064.1163 707914.1631 731873.2102 722121.2934 620403.2112 729827.9126 833079.7197 1.054226239 0.965934401 0.842671912 1.135622551 0.849755607 0.878515216 0.866809354 0.744710496 0.876060112 1 19.66809503 QEAGDS(ph)PPPAPGTPK ddPTM_HeLa_A486_30min_R1 2 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 0 QEAGDS(1)PPPAPGTPK;QEAGDS(1)PPPAPGTPK ; 183.88 7.93E-18 509800000 812450 811840 441240 316230 683060 882600 907000 855410 641460 1004970 TRUE FALSE FALSE 755501.4505 747506.8417 612099.9448 736199.4214 597384.2455 773713.7856 680059.0067 660651.8165 697062.2693 753318.9707 1.002897152 0.992284637 0.812537542 0.977274501 0.793003055 1.027073279 0.902750406 0.876988158 0.925321539 1 19.52290134 -4.563263281 24.99992129 0.910891848 1.000244508 0.178310318 0.071307347 192.7253398 119305.3556 0.016797223 0.044441393 2.73E-05 4.563263281 0.08935266 QEAGKEGTAPS(ph)ENGETK ddPTM_HeLa_A485_30min_R1 2 QEAGKEGTAPSENGETK 17 1 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 QEAGKEGTAPS(1)ENGETK;QEAGKEGT(0.009)APS(0.991)ENGETK ; 145.72 3.47E-08 357310000 209540 258287 111119 239706 238283 339608 535150 670546 161466 318686 TRUE FALSE FALSE 256151.4501 288491.4179 152226.5421 252800.5318 214558.7079 357389.3497 420810.8307 506093.5421 193870.7451 239243.4452 1.070672803 1.205848786 0.636283021 1.056666491 0.896821678 1.493831313 1.758923135 2.115391466 0.810349245 1 17.86811987 -6.270202993 19.39869171 1.525613549 0.972093145 0.263530311 0.371631627 35.59572174 78790.23946 0.126786559 0.114290278 5.37E-07 6.270202993 -0.553520404 QEAGKEGTAPS(ph)ENGETK ddPTM_HeLa_A486_30min_R1 2 QEAGKEGTAPSENGETK 17 1 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 QEAGKEGTAPS(1)ENGETK;QEAGKEGTAPS(1)ENGETK ; 161.53 3.97E-12 297400000 387920 257010 114685 222913 226099 260740 486280 441820 164086 699690 TRUE FALSE FALSE 360728.8112 236643.5916 159094.1034 518952.7294 197739.5551 228572.5498 364607.6007 341227.2309 178309.1066 524483.0698 0.687779705 0.451193957 0.30333506 0.989455636 0.377017995 0.435805392 0.695175158 0.650597227 0.339971139 1 19.00053668 -10.59541098 3.839087139 1.012593332 0.549811007 0.314530255 0.200243489 0.021299471 0.002244681 0.191329776 0.04570617 2.54E-11 10.59541098 -0.462782325 QEAIPDLEDS(ph)PPVS(ph)DSEEQQESAR ddPTM_HeLa_A486_30min_R1 1 QEAIPDLEDSPPVSDSEEQQESAR 24 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 QEAIPDLEDS(1)PPVS(0.878)DS(0.122)EEQQESAR 187.64 1.20E-20 246250000 155870 173090 148020 52563 170180 135550 172510 168640 171500 145620 TRUE FALSE FALSE 144944.3179 159373.718 205337.3081 122369.3204 148834.4375 118827.2192 129346.1734 130244.3534 186365.7581 109155.8042 1.327866338 1.460057202 1.881139621 1.121051888 1.363504567 1.088601931 1.184968352 1.193196774 1.707337136 1 16.73602932 -5.291656753 24.96303974 1.241927228 1.546724885 0.299134011 0.223807592 842.3325372 695862.0738 0.062264759 0.09236655 5.11E-06 5.291656753 0.304797657 QEAKPQQAAGMLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 QEAKPQQAAGMLSPK 15 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 QEAKPQQAAGMLS(1)PK;QEAKPQQAAGMLS(1)PK ; 162.39 3.23E-12 1520370000 3094200 1772030 1101880 5671800 2148760 1845410 3465900 2183070 1644880 6361300 TRUE FALSE FALSE 3782494.115 1979253.494 1509511.265 5981636.072 1934821.91 1942032.814 2725382.151 1647668.66 1974992.328 4775544.981 0.792054965 0.414456047 0.316091937 1.252555697 0.405152065 0.40666203 0.570695525 0.345022121 0.413563758 1 22.18723395 -10.50147128 6.394854729 1.000296463 0.542923466 0.202843644 0.269781232 0.001143101 8.91E-05 0.261859154 0.063470223 3.15E-11 10.50147128 -0.457372996 QEAKPQQAAGMLS(ph)PK ddPTM_HeLa_A486_30min_R1 3 QEAKPQQAAGMLSPK 15 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 QEAKPQQAAGMLS(1)PK;QEAKPQQAAGMLS(1)PK;QEAKPQQAAGMLS(1)PK ;; 242.22 1.45E-41 1654760000 3873920 3605090 1209480 2261070 2181080 4596850 5318800 4354610 2846440 7288400 TRUE FALSE FALSE 3602378.213 3319409.539 1677823.047 5263885.228 1907508.609 4029737.384 3987979.983 3363160.363 3093171.711 5463337.2 0.659373215 0.607579107 0.307105893 0.963492648 0.349147149 0.737596315 0.729953111 0.615587184 0.566168918 1 22.38135104 -14 0.299741844 4.177484992 0.595465511 0.291883547 0.179082986 336.5244074 3.122076095 671.87565 0.17235379 1.00E-14 14 -3.582019481 QEAS(ph)TGQSPEDHASLAPPLS(ph)PDHSSLEAK ddPTM_HeLa_A485_30min_R1 1 QEASTGQSPEDHASLAPPLSPDHSSLEAK 29 0 P48681 P48681 NES Nestin 2 0 QEAS(0.355)T(0.333)GQS(0.312)PEDHAS(0.001)LAPPLS(0.468)PDHS(0.468)S(0.064)LEAK 79.07 0.001638 531200000 95777 157770 136240 44945 221570 100460 156010 156180 123880 114270 TRUE FALSE FALSE 117082.2632 176219.8291 186640.8454 47400.23154 199509.7128 105719.9303 122677.189 117876.6101 148741.5797 85784.59198 1.364840241 2.054213059 2.175691941 0.552549478 2.32570568 1.232388332 1.430060879 1.374100027 1.733896219 1 16.38843092 -11.51602494 0.11283672 7.25E-13 1.971641369 0.114439215 0.493717457 172.8573949 2.376735044 52.03056464 6.775403771 3.05E-12 11.51602494 1.971641369 QEASES(ph)PVK ddPTM_HeLa_A486_30min_R1 1 QEASESPVK 9 0 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 1 0 QEASES(1)PVK 132.99 0.00021393 403520000 662280 903610 444620 370760 711050 1027700 1140900 940170 736440 1094100 TRUE FALSE FALSE 615857.592 832004.6527 616788.7713 863148.0172 621863.4787 900912.8229 855434.7528 726113.8148 800275.2122 820130.2386 0.750926576 1.014478693 0.75206198 1.052452375 0.758249665 1.098499702 1.043047448 0.885364032 0.975790398 1 19.64549351 -6.266554836 24.99549425 0.996032258 0.877972274 0.269830719 0.109903492 671.3035565 3280159.237 0.036287171 0.032983874 5.41E-07 6.266554836 -0.118059984 QEASTGQSPEDHAS(ph)LAPPLS(ph)PDHSSLEAK ddPTM_HeLa_A486_30min_R1 1 QEASTGQSPEDHASLAPPLSPDHSSLEAK 29 0 P48681 P48681 NES Nestin 2 0 QEAS(0.008)T(0.034)GQS(0.418)PEDHAS(0.539)LAPPLS(0.995)PDHS(0.004)S(0.001)LEAK 94.45 6.52E-09 0 97926 100410 74676 4299.1 109190 71194 92950 86782 94080 35464 TRUE FALSE FALSE 91061.89309 92453.14591 103592.5471 10008.52206 95494.37204 62410.80813 69692.92688 67023.63304 102234.9301 26583.58357 3.425493514 3.477828551 3.896861641 0.376492584 3.592230965 2.347719899 2.621652822 2.52124146 3.845791892 1 14.69824798 -10.88697934 2.691805701 0.078161168 2.857351998 0.246461242 0.994400802 97305307.76 90694520.65 577723250 0.247357152 1.30E-11 10.88697934 2.77919083 QEASTGQSPEDHASLAPPLS(ph)PDHSSLEAK ddPTM_HeLa_A485_30min_R1 8 QEASTGQSPEDHASLAPPLSPDHSSLEAK 29 0 P48681 P48681 NES Nestin 1 0 QEASTGQSPEDHASLAPPLS(1)PDHSSLEAK;QEASTGQSPEDHAS(0.194)LAPPLS(0.775)PDHS(0.016)S(0.016)LEAK;QEASTGQSPEDHASLAPPLS(1)PDHSSLEAK;QEASTGQSPEDHAS(0.026)LAPPLS(0.325)PDHS(0.325)S(0.325)LEAK;QEASTGQSPEDHAS(0.035)LAPPLS(0.324)PDHS(0.321)S(0.321)LEAK;QEASTGQSPEDHASLAPPLS(1)PDHSSLEAK;QEASTGQSPEDHASLAPPLS(1)PDHSSLEAK;QEASTGQSPEDHASLAPPLS(1)PDHSSLEAK ;;;;;;; 279.63 1.98E-77 7353040000 1537117 3016950 2609710 417948 3341670 2316420 2273090 2628330 2642240 1218442 TRUE FALSE FALSE 1879043.374 3369756.059 3575150.328 440779.4409 3008961.601 2437704.169 1787425.752 1983727.946 3172513.332 914706.8332 2.054257501 3.683973855 3.908520412 0.48188056 3.289536595 2.665011434 1.954096862 2.168703539 3.468338944 1 19.8029499 -10.91654938 2.602588554 0.016069824 2.622784776 0.201139738 0.974708616 25434777.36 13220573.95 152465166.1 0.247078126 1.21E-11 10.91654938 2.606714953 QEASTGQSPEDHASLAPPLS(ph)PDHSSLEAK ddPTM_HeLa_A486_30min_R1 6 QEASTGQSPEDHASLAPPLSPDHSSLEAK 29 0 P48681 P48681 NES Nestin 1 0 QEASTGQSPEDHASLAPPLS(1)PDHSSLEAK;QEASTGQSPEDHAS(0.008)LAPPLS(0.979)PDHS(0.007)S(0.007)LEAK;QEASTGQSPEDHASLAPPLS(0.998)PDHS(0.001)SLEAK;QEASTGQSPEDHAS(0.003)LAPPLS(0.996)PDHS(0.001)S(0.001)LEAK;QEASTGQSPEDHASLAPPLS(0.999)PDHS(0.001)SLEAK;QEASTGQSPEDHASLAPPLS(0.998)PDHS(0.001)SLEAK ;;;;; 257.76 2.55E-63 4513680000 1639020 1738640 1682170 73139.2 2374610 1022334 1135404 1215245 1821340 283830 TRUE FALSE FALSE 1524133.162 1600863.834 2333551.274 170271.7539 2076764.271 896208.8254 851313.9101 938560.2421 1979215.218 212757.1206 7.163723394 7.524372534 10.96814653 0.800310483 9.76119749 4.212356432 4.001341566 4.411416359 9.302697895 1 17.69884789 -7.910035536 0.150700163 6.16E-15 9.624706196 0.209771184 3.015782401 10.66660052 1.27648216 40.02741036 29.80606172 1.23E-08 7.910035536 9.624706196 QEDTENHPKT(ph)PESAPENK ddPTM_HeLa_A486_30min_R1 1 QEDTENHPKTPESAPENK 18 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 QEDT(0.001)ENHPKT(0.997)PES(0.002)APENK 111.4 0.00011125 185800000 188520 184380 69746 108190 105410 250770 294420 229930 169630 410740 TRUE FALSE FALSE 175305.7215 169769.0573 96753.51906 251871.7876 92188.49489 219832.547 220753.0019 177579.9583 184333.665 307888.0305 0.569381412 0.551398692 0.314249043 0.818062941 0.299422146 0.714001602 0.716991179 0.576767983 0.598703576 1 18.23204626 -14 0.176807161 2.739271555 0.479280052 0.431791155 0.152175206 123.5389654 1.181685895 75.21582516 0.478176927 1.00E-14 14 -2.259991503 QEEEAAQQGPVVVS(ph)PASDYKDK ddPTM_HeLa_A485_30min_R1 2 QEEEAAQQGPVVVSPASDYKDK 22 1 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 QEEEAAQQGPVVVS(1)PASDYKDK;QEEEAAQQGPVVVS(1)PASDYKDK ; 259.7 1.46E-59 697400000 588380 350790 236600 1003580 533200 443060 748950 590350 387810 1304870 TRUE FALSE FALSE 719263.1011 391811.839 324128.1857 1058403.034 480112.7358 466257.9365 588930.7141 445565.7369 465639.9098 979589.9234 0.734249183 0.399975367 0.330881503 1.080455208 0.490116042 0.475972573 0.601201278 0.454849245 0.47534167 1 19.90181841 -10.03503859 4.191302121 1.000038553 0.557722865 0.297193798 0.202796876 136270411.5 241786748.6 73850.51163 0.050587424 9.22E-11 10.03503859 -0.442315687 QEEEAAQQGPVVVS(ph)PASDYKDK ddPTM_HeLa_A486_30min_R1 2 QEEEAAQQGPVVVSPASDYKDK 22 1 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 QEEEAAQQGPVVVS(1)PASDYKDK;QEEEAAQQGPVVVS(1)PASDYKDK ; 245.25 3.02E-47 674480000 618860 544360 222480 360540 423590 773270 913180 808640 436010 1015880 TRUE FALSE FALSE 575481.1098 501222.9311 308630.2142 839355.3407 370459.3924 677871.8094 684692.7054 624530.3245 473803.6979 761497.0357 0.755723375 0.658207331 0.405294045 1.10224374 0.486488292 0.890183123 0.899140342 0.820134938 0.622200318 1 19.5384789 -5.246766607 24.99276414 0.814879974 0.611588198 0.234816539 0.184422758 1292.650408 2201823.703 0.048211209 0.083053861 5.67E-06 5.246766607 -0.203291775 QEEEAAQQGPVVVS(ph)PASDYKDKYSHLIGK ddPTM_HeLa_A486_30min_R1 1 QEEEAAQQGPVVVSPASDYKDKYSHLIGK 29 2 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 QEEEAAQQGPVVVS(0.916)PAS(0.023)DY(0.02)KDKY(0.02)S(0.022)HLIGK 113.6 6.16E-05 185580000 665230 527350 250230 393180 697130 726040 1028900 1034100 388340 941420 TRUE FALSE FALSE 618600.8123 485560.8654 347125.7574 915342.9102 609689.4549 636468.5666 771458.3374 798658.0042 422001.6239 705682.3044 0.876599581 0.688072894 0.491900895 1.297103391 0.863971579 0.901919409 1.093209129 1.131752914 0.59800511 1 19.42865931 -5.246979684 24.97861497 0.985364082 0.685779322 0.331669862 0.193960964 925.5358559 1598828.171 0.051563759 0.088797018 5.66E-06 5.246979684 -0.29958476 QEEEAAQQGPVVVSPAS(ph)DYKDKYSHLIGK ddPTM_HeLa_A485_30min_R1 1 QEEEAAQQGPVVVSPASDYKDKYSHLIGK 29 2 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 QEEEAAQQGPVVVS(0.18)PAS(0.214)DY(0.196)KDKY(0.196)S(0.214)HLIGK 57.299 0.0088182 392980000 58424 56349 32127 74387 88948 90162 153000 186830 60869 114700 TRUE FALSE FALSE 71420.21724 62938.52538 44012.11422 78450.57345 80092.0248 94882.7429 120310.3001 141009.6496 73084.84998 86107.4009 0.829431808 0.730930498 0.511130446 0.911078173 0.93014101 1.101911588 1.397212073 1.637601973 0.84876386 1 16.39384962 -6.059210263 1.550469565 1.265691485 0.710619973 0.484743202 0.2212228 0.301454258 1.467207643 0.090217456 0.095782001 8.73E-07 6.059210263 -0.555071512 QEEEVDYES(ph)EEEEER ddPTM_HeLa_A485_30min_R1 1 QEEEVDYESEEEEER 15 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 QEEEVDYES(1)EEEEER 257.02 2.81E-50 217020000 166520 318580 141640 140820 107330 166190 165010 178390 102040 132610 TRUE FALSE FALSE 203561.7995 355835.1597 194038.5301 148512.64 96643.84834 174891.4514 129754.2655 134639.5728 122518.492 99552.76751 2.044762839 3.574337195 1.94910232 1.491798207 0.970780128 1.756771367 1.303371757 1.352444298 1.230688961 1 16.6031738 -5.006825421 3.979216054 1.33422015 2.820038872 0.681033136 0.409220665 0.106631012 3.875450895 0.104130826 0.213464285 9.84E-06 5.006825421 1.485818723 QEEEVDYES(ph)EEEEER ddPTM_HeLa_A486_30min_R1 1 QEEEVDYESEEEEER 15 0 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 QEEEVDYES(1)EEEEER 85.496 0.001391 0 219780 248440 119440 155750 197470 280080 353930 329840 186530 379310 TRUE FALSE FALSE 204374.5569 228752.7096 165690.3667 362593.8712 172701.4713 245526.5772 265372.9705 254742.6324 202698.5706 284328.3071 0.718797784 0.804537233 0.582743127 1.275264763 0.607401609 0.863531949 0.933332925 0.895945377 0.712903237 1 18.11719821 QEEEVDYES(ph)EEEEEREGEENDDEDMQEERNPHR ddPTM_HeLa_A485_30min_R1 1 QEEEVDYESEEEEEREGEENDDEDMQEERNPHR 33 2 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 QEEEVDYES(1)EEEEEREGEENDDEDMQEERNPHR 313.62 8.76E-110 284630000 34784 34395 46582 28810 74582 59308 71472 88453 50540 42850 TRUE FALSE FALSE 42521.5808 38417.19605 63814.62024 30383.81735 67156.35421 62413.27517 56201.42333 66759.76306 60682.91442 32168.2836 1.321847983 1.194256944 1.983774485 0.944527154 2.087657366 1.940211544 1.747106685 2.075328728 1.886420649 1 14.97335134 -5.778797343 24.99994205 1.848641066 1.393660615 0.22331828 0.379961097 327.5822194 471800.8927 0.110959124 0.126104476 1.66E-06 5.778797343 -0.454980451 QEEEVDYES(ph)EEEEEREGEENDDEDMQEERNPHR ddPTM_HeLa_A486_30min_R1 1 QEEEVDYESEEEEEREGEENDDEDMQEERNPHR 33 2 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 QEEEVDYES(1)EEEEEREGEENDDEDMQEERNPHR 295.06 3.75E-93 355700000 67191 82733 102960 36174 144460 71354 114190 137230 67761 90780 TRUE FALSE FALSE 62481.25787 76176.93577 142828.8694 84214.90013 126340.4798 62551.06895 85618.45422 105985.7247 73634.57804 68048.09712 0.91819258 1.119457251 2.098939947 1.237579061 1.856635014 0.919218488 1.258204973 1.557511954 1.082096064 1 16.0542672 -6.279619296 24.91174449 1.20417576 1.452688274 0.129228234 0.359078311 2021.579507 2770139.53 0.128672134 0.113697618 5.25E-07 6.279619296 0.248512514 QEEMNS(ph)QQEEEEMETDAR ddPTM_HeLa_A485_30min_R1 2 QEEMNSQQEEEEMETDAR 18 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 QEEMNS(1)QQEEEEMETDAR;QEEMNS(1)QQEEEEMETDAR ; 314.72 3.02E-89 474730000 175598 235350 257450 191919 262470 251180 283600 309510 207052 276980 TRUE FALSE FALSE 214659.1693 262872.1352 352691.4684 202403.049 236337.5652 264331.3964 223006.5432 233602.1872 248605.4372 207933.9834 1.03234289 1.264209587 1.696170403 0.973400527 1.136599036 1.271227493 1.072487236 1.123444005 1.195597916 1 17.66576604 QEEMNS(ph)QQEEEEMETDAR ddPTM_HeLa_A486_30min_R1 1 QEEMNSQQEEEEMETDAR 18 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 QEEMNS(1)QQEEEEMETDAR 347.14 3.72E-115 214350000 63025 70268 54004 20340 72207 58199 69034 63214 53536 66902 TRUE FALSE FALSE 58607.27296 64699.70777 74915.79508 47352.54793 63150.12476 51018.9991 51760.96303 48821.55215 58176.54359 50149.30374 1.168655766 1.290141696 1.493855138 0.944231413 1.259242303 1.017342122 1.032137222 0.973524027 1.160066825 1 15.61394205 -5.27024307 24.99931723 1.060078226 1.314809954 0.524548475 0.114376319 498.1992747 1414706.317 0.031744056 0.047874261 5.37E-06 5.27024307 0.254731728 QEESES(ph)PVERPLKENPPNK ddPTM_HeLa_A485_30min_R1 2 QEESESPVERPLKENPPNK 19 2 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 QEES(0.032)ES(0.968)PVERPLKENPPNK;QEES(0.191)ES(0.809)PVERPLKENPPNK ; 192.57 5.87E-19 2537900000 1341670 1061480 646000 1565720 1194480 1114890 1575760 1404880 965770 1991220 TRUE FALSE FALSE 1640119.863 1185610.852 884982.2823 1651251.319 1075553.377 1173263.916 1239086.003 1060330.977 1159591.18 1494845.5 1.09718353 0.793132703 0.592022575 1.10463009 0.719508054 0.78487303 0.828905732 0.709324795 0.775726442 1 20.51156495 QEESES(ph)PVERPLKENPPNK ddPTM_HeLa_A486_30min_R1 3 QEESESPVERPLKENPPNK 19 2 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 QEES(0.157)ES(0.843)PVERPLKENPPNK;QEES(0.003)ES(0.997)PVERPLKENPPNK;QEES(0.037)ES(0.963)PVERPLKENPPNK ;; 162.65 1.71E-12 2824990000 1647950 1634220 709138 571715 1252034 1596080 1829300 1682360 1291283 2206740 TRUE FALSE FALSE 1532437.215 1504718.455 983735.225 1330981.413 1094992.221 1399171.877 1371589.792 1299323.354 1403212.45 1654157.941 0.926415294 0.909658273 0.594704533 0.804627769 0.661963525 0.845851441 0.829177044 0.785489294 0.848294117 1 20.65766556 -8.527663959 0.87329142 1.00147979 0.786231772 0.289794101 0.096261442 2.458900636 2.856022421 0.101594433 0.032655967 2.97E-09 8.527663959 -0.215248018 QEGHLDSES(ph)PTNIPLTK ddPTM_HeLa_A485_30min_R1 2 QEGHLDSESPTNIPLTK 17 0 Q9H7P9;Q9H7P9-3;H7BXC7;E7ESZ3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 QEGHLDS(0.003)ES(0.997)PTNIPLTK;QEGHLDSES(0.982)PT(0.018)NIPLTK ; 168.78 3.41E-12 650520000 1393960 1715780 1219980 1613480 1944330 1836610 2231900 2667900 1443660 2221680 TRUE FALSE FALSE 1704041.593 1916425.546 1671301.37 1701620.327 1750745.678 1932772.06 1755036.332 2013593.342 1733389.32 1667856.063 1.021695835 1.149035332 1.00206571 1.020244111 1.049698303 1.158836246 1.052270859 1.207294434 1.039291914 1 20.66956336 -6.114869411 21.98892737 1.102290996 1.049958725 0.082324879 0.067044217 18.12015062 3426.222108 0.021086511 0.021086537 7.68E-07 6.114869411 -0.052332271 QEGHLDSES(ph)PTNIPLTK ddPTM_HeLa_A486_30min_R1 4 QEGHLDSESPTNIPLTK 17 0 Q9H7P9;Q9H7P9-3;H7BXC7;E7ESZ3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 QEGHLDS(0.024)ES(0.975)PT(0.001)NIPLTK;QEGHLDS(0.003)ES(0.993)PT(0.004)NIPLTK;QEGHLDS(0.053)ES(0.933)PT(0.014)NIPLTK;QEGHLDS(0.113)ES(0.855)PT(0.032)NIPLTK ;;; 158.73 4.41E-09 897400000 2672530 2584100 1592300 621144 2531150 2478980 2959610 2875200 2090720 3206770 TRUE FALSE FALSE 2485199.448 2379326.505 2208881.203 1446054.623 2213669.565 2173148.652 2219084.274 2220579.725 2271945.293 2403773.919 1.033874038 0.98982957 0.918922194 0.6015768 0.920914212 0.904057006 0.923166799 0.923788925 0.945157643 1 21.19686978 -9.664940311 10.53545629 0.999999992 0.901947867 0.060152146 0.108994103 0 0 0.111889242 0.027137127 2.16E-10 9.664940311 -0.098052124 QEKPAEKPAET(ph)PVATSPTATDSTSGDSSR ddPTM_HeLa_A486_30min_R1 1 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 H0Y579;P54727-2;P54727 H0Y579 RAD23B UV excision repair protein RAD23 homolog B 1 0 QEKPAEKPAET(0.402)PVAT(0.314)S(0.247)PT(0.038)ATDSTSGDSSR 61.555 0.015299 498030000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 QEKPAEKPAETPVAT(ph)SPTATDSTSGDSSR ddPTM_HeLa_A486_30min_R1 1 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 H0Y579;P54727-2;P54727 H0Y579 RAD23B UV excision repair protein RAD23 homolog B 1 0 QEKPAEKPAET(0.001)PVAT(0.466)S(0.335)PT(0.162)AT(0.034)DS(0.002)TSGDSSR 66.097 0.0078737 309110000 48595 142870 25244 98214 52488 71288 68009 72793 39685 127240 TRUE FALSE FALSE 45188.74144 131548.4609 35019.15286 228647.1555 45904.46561 62493.21136 50992.42887 56219.62296 43124.92775 95378.27581 0.473784424 1.379228758 0.367160683 2.397266605 0.481288482 0.655214312 0.534633578 0.589438449 0.452146229 1 16.54137308 QEKPAEKPAETPVATS(ph)PTATDSTSGDSSR ddPTM_HeLa_A485_30min_R1 5 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 H0Y579;P54727-2;P54727 H0Y579 RAD23B UV excision repair protein RAD23 homolog B 1 0 QEKPAEKPAETPVAT(0.04)S(0.856)PT(0.104)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.058)S(0.688)PT(0.249)AT(0.005)DSTSGDSSR;QEKPAEKPAETPVAT(0.003)S(0.994)PT(0.003)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.174)S(0.824)PT(0.002)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.016)S(0.976)PT(0.008)ATDSTSGDSSR ;;;; 287.3 4.20E-78 48087200000 7302160 5774520 4000090 9738210 7703170 7534700 12012170 12074810 5894230 13032290 TRUE FALSE FALSE 8926500.3 6449799.882 5479889.749 10270183.75 6936215.347 7929205.241 9445671.749 9113443.915 7077147.896 9783579.945 0.912396112 0.659247425 0.560110898 1.049736785 0.708964958 0.810460515 0.965461702 0.931504006 0.723369966 1 23.22193103 -5.255195839 24.99428976 0.874370207 0.705451088 0.259572441 0.13357674 723.1811761 2895047.746 0.036128732 0.060639453 5.56E-06 5.255195839 -0.16891912 QEKPAEKPAETPVATS(ph)PTATDSTSGDSSR ddPTM_HeLa_A486_30min_R1 6 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 H0Y579;P54727-2;P54727 H0Y579 RAD23B UV excision repair protein RAD23 homolog B 1 0 QEKPAEKPAET(0.005)PVAT(0.196)S(0.693)PT(0.093)AT(0.009)DS(0.001)T(0.001)S(0.001)GDS(0.001)S(0.001)R;QEKPAEKPAETPVAT(0.002)S(0.997)PT(0.002)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.041)S(0.955)PT(0.004)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.05)S(0.799)PT(0.144)AT(0.005)DS(0.001)TSGDSSR;QEKPAEKPAETPVAT(0.002)S(0.932)PT(0.065)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.008)S(0.991)PT(0.001)ATDSTSGDSSR ;;;;; 181.32 9.54E-21 73239200000 16139020 13409270 5775930 6236200 12996730 15776200 19796400 18422200 10930480 20718700 TRUE FALSE FALSE 15007758.04 12346670.61 8012524.781 14518188.76 11366558.93 13829892.84 14843131.34 14227867.21 11877942.81 15530602.66 0.966334557 0.794989794 0.515918471 0.93481168 0.731881382 0.890492993 0.955734407 0.916118165 0.764808879 1 23.88861048 -6.351613225 6.436553156 0.904584568 0.782304523 0.172824834 0.127387409 0.454578053 27.10195709 0.045494556 0.040034105 4.45E-07 6.351613225 -0.122280044 QEKPSSPS(ph)PMPSSTPSPSLNLGNTEEAIR ddPTM_HeLa_A486_30min_R1 1 QEKPSSPSPMPSSTPSPSLNLGNTEEAIR 29 1 O95810 O95810 SDPR Serum deprivation-response protein 1 0 QEKPS(0.187)S(0.187)PS(0.624)PMPS(0.001)S(0.001)TPSPSLNLGNTEEAIR 82.765 0.0013034 256850000 12199 9943.1 4719.7 5356.4 13533 12006 14703 14477 5828.4 15379 TRUE FALSE FALSE 11343.9131 9155.172544 6547.294238 12469.9699 11835.56495 10524.82179 11024.15389 11180.90313 6333.610405 11527.9983 0.984031469 0.79416845 0.56794719 1.081711636 1.02667997 0.912979124 0.956293851 0.969891116 0.549411115 1 13.49285441 -4.216408108 20.5961392 0.87789848 0.984034921 0.034316421 0.174759298 12414.83108 5676952.744 0.044237585 12.6599056 6.08E-05 4.216408108 0.10613644 QELGS(ph)PEER ddPTM_HeLa_A485_30min_R1 4 QELGSPEER 9 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 QELGS(1)PEER;QELGS(1)PEER;QELGS(1)PEER;QELGS(1)PEER ;;; 108.53 0.0010119 3791650000 2220640 3043720 2603340 1987030 3190240 2552580 2871380 3104170 2307080 2437450 TRUE FALSE FALSE 2714613.707 3399656.577 3566423.8 2095576.417 2872608.504 2686229.142 2257886.206 2342867.44 2770089.794 1829838.573 1.483526332 1.857899723 1.949037392 1.145224747 1.569869904 1.468014273 1.233926445 1.280368375 1.513843809 1 20.80328495 -2.423031336 0.08545026 0.619948789 3.260680829 0.426137662 0.215087718 120.8402472 1.008760799 5.697127847 38.45022302 0.003775449 2.423031336 2.64073204 QELGS(ph)PEER ddPTM_HeLa_A486_30min_R1 4 QELGSPEER 9 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 QELGS(1)PEER;QELGS(1)PEER;QELGS(1)PEER;QELGS(1)PEER ;;; 112.82 0.00080667 3752320000 2911880 3343070 2681530 983890 3744400 2850620 3136810 3124790 2768930 2857450 TRUE FALSE FALSE 2707772.249 3078152.958 3719890.23 2290545.643 3274742.437 2498939.487 2351946.96 2413343.531 3008943.082 2141925.921 1.264176423 1.437095899 1.736703493 1.069386023 1.528877542 1.166678765 1.098052429 1.126716618 1.404783915 1 21.03047715 -6.282663589 22.75368713 1.163341404 1.408439065 0.30543968 0.186933927 336.4389588 360681.3383 0.064685417 0.057130781 5.22E-07 6.282663589 0.245097661 ESVAS(ph)GDDR ddPTM_HeLa_A485_30min_R1 2 ESVASGDDR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ESVAS(1)GDDR;ES(0.001)VAS(0.999)GDDR ; 129.69 0.0002496 4535800000 5563700 8217700 4603000 4247700 3819600 5588600 5402700 5858700 3920400 4254300 TRUE FALSE FALSE 6801325.87 9178688.531 6305841.247 4479741.095 3439307.213 5881210.454 4248369.009 4421844.639 4707188.32 3193781.305 2.129552785 2.873925186 1.974412349 1.402644911 1.076876243 1.841456848 1.33020035 1.38451704 1.473860566 1 21.6068341 -5.060217167 3.350375443 1.383952316 2.500488433 0.73601656 0.276006935 0.112642339 2.493086839 0.072973265 0.146965958 8.71E-06 5.060217167 1.116536117 QEMQEVQSSR ddPTM_HeLa_A485_30min_R1 8 QEMQEVQSSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;;;;; ;;;;;;; 272.82 1.85E-45 2419210600 1026464 1337354 1430636 1197241 1614685 1394036 1735446 1917344 1445985 1947607 FALSE FALSE TRUE 1254797.376 1493745.917 1959887.79 1262643.244 1453921.292 1467025.569 1364653.785 1447112.378 1736180.926 1462104.418 0.858213244 1.021641066 1.340456787 0.863579392 0.994403186 1.0033658 0.93334906 0.989746259 1.187453444 1 20.47961492 -11.58896992 2.004696226 0.677344729 1.021269582 0.002147327 0.138100451 5270859.585 917550.6748 7991924.82 0.034643015 2.58E-12 11.58896992 0.343924853 QEMQEVQSSR ddPTM_HeLa_A486_30min_R1 4 QEMQEVQSSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;; ;;; 139.43 0.00026125 982510000 757970 834210 932930 269454 1228720 721060 791550 848260 793810 708082 FALSE FALSE TRUE 704840.2172 768104.1615 1294185.481 627302.5295 1074602.48 632102.9484 593495.8178 655129.7154 862618.0899 530773.6584 1.327948752 1.447140696 2.438300131 1.181864472 2.02459648 1.190908664 1.118171199 1.234292066 1.625208931 1 19.01773725 -6.289337636 24.27708203 1.241137778 1.684825423 0.273823782 0.366516306 719.2481219 625887.4365 0.126470244 0.111563221 5.14E-07 6.289337636 0.443687644 QENGDLS(ph)PFSGTSLR ddPTM_HeLa_A485_30min_R1 2 QENGDLSPFSGTSLR 15 0 P19174-2 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 QENGDLS(0.979)PFS(0.021)GTSLR;QENGDLS(0.992)PFS(0.008)GTSLR ; 197.1 2.56E-16 0 424130 443050 428200 486440 551810 388840 489370 398230 351490 613330 TRUE FALSE FALSE 518476.2553 494860.8435 586608.9989 513012.9855 496869.8589 409199.0611 384812.1017 300563.4681 422030.8189 460438.1185 1.126049809 1.074760806 1.274023534 1.114184436 1.079124075 0.888716735 0.835752051 0.652777118 0.916585317 1 18.81264775 -6.242812608 2.090365629 0.822769309 1.150876438 0.674901578 0.095850957 0.176680862 1.516462663 0.037196127 0.034637562 5.72E-07 6.242812608 0.328107129 QENGDLS(ph)PFSGTSLR ddPTM_HeLa_A486_30min_R1 1 QENGDLSPFSGTSLR 15 0 P19174-2 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 QENGDLS(0.999)PFS(0.001)GTSLR 189.56 6.17E-16 0 172380 223900 163550 77865 212540 196020 220260 211670 154970 225410 TRUE FALSE FALSE 160297.0522 206157.3486 226880.94 181273.6551 185881.2513 171837.0454 165148.6183 163477.3617 168402.9244 168965.8688 0.948694865 1.220112381 1.342761953 1.072841849 1.100111239 1.016992642 0.977408156 0.967517066 0.996668295 1 17.36637233 -6.042701 1.60985968 0.98382399 1.169827274 0.382155518 0.094455323 0.385313627 2.020016761 0.038995546 0.041862145 9.06E-07 6.042701 0.186003284 QENKRPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 QENKRPSPR 9 2 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 0 QENKRPS(1)PR 56.205 0.027935 429400000 69829 71325 34293 93344 40040 76725 87956 134860 56271 106090 TRUE FALSE FALSE 85362.22014 79665.8383 46979.40775 98443.14636 36053.47701 80742.20236 69163.48207 101785.3735 67564.07355 79643.71544 1.071801079 1.000277773 0.589869615 1.236044122 0.452684519 1.013792512 0.868411044 1.278008855 0.848329001 1 16.28127291 QEPCAQHNGSEPAS(ph)PKR ddPTM_HeLa_A485_30min_R1 4 QEPCAQHNGSEPASPKR 17 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 QEPCAQHNGSEPAS(1)PKR;QEPCAQHNGSEPAS(1)PKR;QEPCAQHNGS(0.126)EPAS(0.874)PKR;QEPCAQHNGS(0.008)EPAS(0.992)PKR ;;; 238.04 1.65E-42 1111020000 526734 508970 403296 623185 685495 571756 820633 821314 475940 917410 TRUE FALSE FALSE 643904.1611 568489.614 552491.9729 657228.0186 617244.7109 601692.2601 645298.0556 619885.4537 571456.7924 688716.5707 0.934933452 0.825433332 0.80220514 0.954279375 0.896224568 0.873642781 0.936957354 0.900058863 0.829741605 1 19.39355086 -10.99997869 2.838184829 1.116169214 0.883800907 0.337228254 0.04890426 53856172.9 10371141.86 40889166.03 0.012896998 1.00E-11 10.99997869 -0.232368308 QEPCAQHNGSEPAS(ph)PKR ddPTM_HeLa_A486_30min_R1 5 QEPCAQHNGSEPASPKR 17 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 QEPCAQHNGS(0.005)EPAS(0.995)PKR;QEPCAQHNGSEPAS(1)PKR;QEPCAQHNGS(0.107)EPAS(0.893)PKR;QEPCAQHNGS(0.006)EPAS(0.994)PKR;QEPCAQHNGSEPAS(1)PKR ;;;; 216.38 3.42E-25 2961640000 1601512 1642509 1253832 451233 1945778 1623272 2008308 1895738 1420221 1995185 TRUE FALSE FALSE 1489254.279 1512350.605 1739349.329 1050493.228 1701720.38 1423009.205 1505808.097 1464119.841 1543326.9 1495577.69 0.995771928 1.011215008 1.162994969 0.702399638 1.137834826 0.951477957 1.006840438 0.978966089 1.031926934 1 20.51227142 -7.75969388 24.44863402 1.015963447 0.993842183 0.005869477 0.117168891 341.3263836 4781603.758 0.084677765 0.028139711 1.74E-08 7.75969388 -0.022121264 QEPES(ph)EEEEEEK ddPTM_HeLa_A485_30min_R1 2 QEPESEEEEEEK 12 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEK;QEPES(1)EEEEEEK ; 257.35 2.65E-33 1033900000 764260 922660 319981 740590 360060 700780 808130 819790 343150 728360 TRUE FALSE FALSE 934267.0003 1030557.061 438355.2874 781046.5564 324211.1622 737471.7572 635466.4237 618735.2171 412017.0574 546793.2565 1.708629339 1.884728915 0.801683785 1.428412928 0.592931896 1.348721383 1.16216946 1.13157068 0.75351525 1 19.06063592 -4.754030823 24.99949292 1.047172222 1.796679451 0.600765456 0.250437284 106.0540182 357860.9149 0.060361834 0.153055144 1.76E-05 4.754030823 0.749507229 QEPES(ph)EEEEEEK ddPTM_HeLa_A486_30min_R1 2 QEPESEEEEEEK 12 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEK;QEPES(1)EEEEEEK ; 226.7 3.03E-23 632360000 897380 620190 189313 237460 266725 553400 600180 483520 412270 1495250 TRUE FALSE FALSE 834478.2961 571043.8857 262620.0636 552818.8806 233269.8634 485127.1346 450008.6159 373433.0512 448005.8955 1120829.668 0.744518387 0.5094832 0.23430863 0.493222919 0.208122492 0.432828599 0.401495989 0.333175559 0.399709169 1 20.09613562 -9.986558873 5.13233485 1.000002674 0.408330359 0.595240206 0.143943471 386540314.2 272016038 18698.14888 0.03604781 1.03E-10 9.986558873 -0.591672315 QEPES(ph)EEEEEEKQEK ddPTM_HeLa_A485_30min_R1 5 QEPESEEEEEEKQEK 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK ;;;; 199.12 1.45E-25 6479350000 1284580 857888 524439 2445010 1061884 1119440 2109990 1898390 773292 2968610 TRUE FALSE FALSE 1570330.389 958210.539 718450.8098 2578574.705 956159.1005 1178052.147 1659173.399 1432806.876 928484.6113 2228590.16 0.704629509 0.429962654 0.322379064 1.157043027 0.429042144 0.5286087 0.744494627 0.642920758 0.416624208 1 21.0876999 -10.24057109 4.180714807 1.000234517 0.599457796 0.219812313 0.227569226 61316658.37 50064959.1 134579.7131 0.054099038 5.75E-11 10.24057109 -0.400776721 QEPES(ph)EEEEEEKQEK ddPTM_HeLa_A486_30min_R1 5 QEPESEEEEEEKQEK 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK ;;;; 261.82 8.95E-51 8818870000 3029660 2620830 739702 2217290 1624790 3527130 4820550 4056090 1827350 6934270 TRUE FALSE FALSE 2817296.479 2413145.886 1026134.424 5161963.176 1420993.688 3091988.562 3614397.403 3132606.851 1985746.169 5197883.657 0.542008376 0.464255463 0.197413888 0.993089402 0.273379279 0.594855284 0.695359427 0.602669674 0.382029745 1 22.30949291 -14 0.304441743 4.970533952 0.50835502 0.299577916 0.214224062 352.7309658 3.242230056 896.3131668 0.204098444 1.00E-14 14 -4.462178932 QEPES(ph)EEEEEEKQEKEEK ddPTM_HeLa_A486_30min_R1 1 QEPESEEEEEEKQEKEEK 18 2 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEKQEKEEK 70.452 0.0052865 0 30497 30726 11112 80585 45811 70890 131160 117360 24440 102600 TRUE FALSE FALSE 28359.31779 28291.15986 15414.86399 187605.9525 40064.95721 62144.31256 98342.38073 90639.68995 26558.47888 76908.29219 0.368742004 0.367855781 0.200431755 2.439346229 0.52094457 0.808031368 1.278696717 1.178542487 0.345326598 1 16.23085154 QEPGGSHGS(ph)ETEDTGR ddPTM_HeLa_A485_30min_R1 5 QEPGGSHGSETEDTGR 16 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 QEPGGS(0.002)HGS(0.993)ET(0.005)EDTGR;QEPGGS(0.004)HGS(0.99)ET(0.006)EDTGR;QEPGGSHGS(0.967)ET(0.033)EDTGR;QEPGGSHGS(1)ETEDTGR;QEPGGSHGS(0.995)ET(0.004)EDTGR ;;;; 291.39 2.16E-67 2787799000 687449 833986 820289 690147 922482 770782 864053 870643 776793 970633 TRUE FALSE FALSE 840369.6584 931513.408 1123748.036 727847.9831 830636.453 811138.9537 679441.0179 657116.4391 932688.2299 728672.0563 1.153289262 1.278371251 1.542186264 0.998869075 1.139931806 1.113174228 0.932437318 0.901799971 1.279983529 1 19.47491014 -5.287489855 24.96387167 1.049413779 1.319991204 0.457112834 0.135935125 645.6107219 618679.8485 0.038647856 0.057345034 5.16E-06 5.287489855 0.270577426 QEPGGSHGS(ph)ETEDTGR ddPTM_HeLa_A486_30min_R1 6 QEPGGSHGSETEDTGR 16 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 QEPGGS(0.003)HGS(0.993)ET(0.004)EDTGR;QEPGGS(0.012)HGS(0.984)ET(0.004)EDTGR;QEPGGSHGS(0.997)ET(0.003)EDTGR;QEPGGS(0.001)HGS(0.962)ET(0.036)EDTGR;QEPGGS(0.015)HGS(0.965)ET(0.02)EDTGR;QEPGGS(0.037)HGS(0.96)ET(0.003)EDTGR ;;;;; 300.3 9.98E-68 1250581000 545969 605864 473800 205825.3 662700 522276 581387 581668 493429 582402 TRUE FALSE FALSE 507699.3925 557853.1301 657268.0488 479171.7002 579577.9866 457842.8972 435917.8233 449234.8941 536199.823 436564.7484 1.162941796 1.277824497 1.5055454 1.097595951 1.327587692 1.048739961 0.998518146 1.029022375 1.228225194 1 18.73583612 -6.268018877 24.41043813 1.058816081 1.277525105 0.454074198 0.116956088 355.3151038 1318241.545 0.040669419 0.036725878 5.39E-07 6.268018877 0.218709024 QEPIES(ph)DEEEAEPPR ddPTM_HeLa_A485_30min_R1 2 QEPIESDEEEAEPPR 15 0 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 QEPIES(1)DEEEAEPPR;QEPIES(1)DEEEAEPPR ; 194.19 1.67E-18 617880000 104133 151990 126454 108490 83634 121067 105993 116082 100715 110186 TRUE FALSE FALSE 127297.0266 169763.9084 173234.5968 114416.534 75307.1053 127405.8809 83346.72967 87612.70749 120927.5767 82718.65802 1.53891552 2.052304914 2.09426266 1.383201042 0.910400472 1.540231478 1.007592865 1.059165001 1.461914151 1 16.33592516 -5.416413865 4.668799604 1.174612308 1.90498471 0.657927298 0.235420786 0.131436603 4.568961224 0.065771534 0.098555951 3.83E-06 5.416413865 0.730372402 QEPIES(ph)DEEEAEPPR ddPTM_HeLa_A486_30min_R1 1 QEPIESDEEEAEPPR 15 0 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 QEPIES(1)DEEEAEPPR 210.47 4.90E-23 0 79919 83060 46426 15377 54822 67258 61810 53977 60124 84190 TRUE FALSE FALSE 74317.0908 76478.0231 64403.39053 35798.43311 47945.71357 58960.39179 46344.48424 41687.61541 65335.59673 63108.27602 1.177612438 1.211854101 1.020522103 0.567254176 0.759737337 0.93427353 0.734364606 0.660572876 1.035293639 1 15.94554159 -5.016360549 5.537763415 0.797188851 1.180625244 0.549210874 0.13962229 0.11388033 11.68821563 0.036997067 0.070932072 9.63E-06 5.016360549 0.383436392 QEPIES(ph)DEEEAEPPREVEPGQR ddPTM_HeLa_A485_30min_R1 1 QEPIESDEEEAEPPREVEPGQR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 QEPIES(1)DEEEAEPPREVEPGQR 199.46 4.53E-27 249960000 75515 89986 102110 83922 122010 96249 123650 122060 92506 111960 TRUE FALSE FALSE 92313.05123 100509.0799 139884.7382 88506.44636 109862.256 101288.4488 97231.16737 92124.59362 111071.1057 84050.43247 1.098305488 1.195818712 1.664295281 1.053015954 1.307099235 1.205091346 1.156819358 1.096063291 1.321481668 1 16.35896762 -6.421039538 1.232527578 1.146258824 1.279885458 0.09421685 0.171705485 1.199363582 3.721300959 0.092834932 0.072617045 3.79E-07 6.421039538 0.133626635 QEPLEEDS(ph)PSSSSAGLDK ddPTM_HeLa_A485_30min_R1 4 QEPLEEDSPSSSSAGLDK 18 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 QEPLEEDS(0.997)PS(0.003)SSSAGLDK;QEPLEEDS(0.999)PSSSSAGLDK;QEPLEEDS(0.994)PS(0.005)S(0.001)SSAGLDK;QEPLEEDS(0.767)PS(0.214)S(0.018)S(0.001)SAGLDK ;;; 312.26 3.65E-89 1954400000 1027920 959140 799040 1289430 1266150 1137450 1566850 1563050 859450 1692180 TRUE FALSE FALSE 1256577.258 1071303.08 1094638.147 1359868.296 1140087.66 1197005.123 1232079.698 1179709.537 1031933.732 1270350.668 0.989157789 0.843312879 0.861681876 1.070466864 0.897459016 0.942263544 0.969873696 0.928648732 0.81232195 1 20.27679536 QEPLEEDS(ph)PSSSSAGLDK ddPTM_HeLa_A486_30min_R1 3 QEPLEEDSPSSSSAGLDK 18 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 QEPLEEDS(0.477)PS(0.172)S(0.172)S(0.172)S(0.006)AGLDK;QEPLEEDS(0.995)PS(0.005)SSSAGLDK;QEPLEEDS(0.985)PS(0.014)SSSAGLDK ;; 378.45 3.29E-166 647830000 767750 711600 415470 302350 727410 779360 845540 892220 594900 1047140 TRUE FALSE FALSE 713934.6897 655210.2244 576351.1107 703886.0799 636171.455 683210.4872 633976.9488 689080.983 646466.411 784929.3283 0.909552827 0.834737856 0.734271341 0.896750898 0.810482463 0.870410192 0.807686662 0.877889204 0.823598237 1 19.58220324 -13.99999753 0.432796107 4.243423049 0.836787218 0.487177173 0.048924061 909.0672168 5.657909536 2812.775495 0.026891986 1.00E-14 13.99999753 -3.406635831 QEPLEEDSPS(ph)SSSAGLDK ddPTM_HeLa_A486_30min_R1 1 QEPLEEDSPSSSSAGLDK 18 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 QEPLEEDS(0.352)PS(0.646)S(0.002)SSAGLDK 282.1 2.41E-69 196210000 376480 344400 200730 140810 345540 386230 458230 470660 321050 507170 TRUE FALSE FALSE 350090.6961 317108.4897 278458.0317 327812.7961 302199.1512 338580.8695 343576.0073 363500.9924 348878.8725 380171.3309 0.92087611 0.834119945 0.732454052 0.862276478 0.794902526 0.890600742 0.903739918 0.956150459 0.917688537 1 18.53629022 -6.771270622 1.367511749 0.95696724 0.825136709 0.552615938 0.049775723 0.337192033 1.272614744 0.031182285 0.018039553 1.69E-07 6.771270622 -0.131830531 QEPLGS(ph)DSEGVNCLAYDEAIMAQQDR ddPTM_HeLa_A485_30min_R1 1 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;F5H6Q1;Q96FW1;F5H3F0;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 0 QEPLGS(0.5)DS(0.5)EGVNCLAYDEAIMAQQDR 178.59 3.67E-20 90325000 22460 31230 28120 23761 41767 26480 33974 34533 28916 32658 TRUE FALSE FALSE 27456.14951 34882.07684 38522.75817 25059.00326 37608.53083 27866.45185 26715.17736 26063.7276 34719.17597 24516.96163 1.119883856 1.422773236 1.571269669 1.022108842 1.533980083 1.136619304 1.089661018 1.063089628 1.416128821 1 14.58149258 -6.375193702 24.55060176 1.141822539 1.334870675 0.209216686 0.187510003 31.03554685 6650.732496 0.063990303 0.056434141 4.22E-07 6.375193702 0.193048136 QEPLGS(ph)DSEGVNCLAYDEAIMAQQDR ddPTM_HeLa_A486_30min_R1 1 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;F5H6Q1;Q96FW1;F5H3F0;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 0 QEPLGS(0.79)DS(0.21)EGVNCLAYDEAIMAQQDR 164.39 7.86E-14 124030000 19602 25488 22052 11445 31835 27023 27160 27210 22807 26197 TRUE FALSE FALSE 18228.00102 23468.23805 30591.12497 26644.5384 27841.95745 23689.17701 20364.28073 21014.87699 24783.92912 19637.10069 0.928242988 1.195096895 1.557822892 1.35684686 1.417824245 1.206347993 1.037030927 1.0701619 1.262097166 1 14.26129432 -6.531098318 6.333066141 1.100313656 1.305352631 0.239660664 0.165715431 0.231503604 40.55809606 0.066297315 0.053061469 2.94E-07 6.531098318 0.205038975 QEPLGSDS(ph)EGVNCLAYDEAIMAQQDR ddPTM_HeLa_A485_30min_R1 1 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;F5H6Q1;Q96FW1;F5H3F0;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 0 QEPLGS(0.429)DS(0.571)EGVNCLAYDEAIMAQQDR 146.88 3.97E-09 92069000 20706 26637 26741 23323 40908 23689 32926 29117 27617 33868 TRUE FALSE FALSE 25311.97827 29751.96544 36633.60869 24597.07643 36835.05588 24929.31941 25891.09112 21976.0101 33159.47858 25425.33089 0.995541744 1.170170235 1.440831147 0.967424044 1.448754238 0.980491444 1.018318748 0.864335264 1.30419064 1 14.63397893 QEPLGSDS(ph)EGVNCLAYDEAIMAQQDR ddPTM_HeLa_A486_30min_R1 2 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;F5H6Q1;Q96FW1;F5H3F0;F5GYJ8 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 0 QEPLGS(0.411)DS(0.589)EGVNCLAYDEAIMAQQDR;QEPLGS(0.437)DS(0.563)EGVNCLAYDEAIMAQQDR ; 175.38 1.71E-14 117455000 11199 11813 10649 4061.3 14397 13626 14841 16718 12502 15258 TRUE FALSE FALSE 10414.00793 10876.89486 14772.57799 9454.911647 12591.19401 11944.96266 11127.62483 12911.67635 13585.68343 11437.29749 0.910530477 0.951002181 1.291614388 0.826673579 1.100888914 1.044386812 0.972924315 1.128909724 1.187840348 1 13.48145858 -7.275778135 23.38600939 1.118781309 1.019562611 0.097498293 0.124977185 791.2236298 1290443.937 0.065684687 0.031831725 5.30E-08 7.275778135 -0.099218698 QEPQGQEIQSENLIMEK ddPTM_HeLa_A485_30min_R1 2 QEPQGQEIQSENLIMEK 17 0 Q4VCS5 Q4VCS5 AMOT Angiomotin 0 0 ; ; 52.026 0.030959 8288700000 1400220 2497720 2856050 546500 3206210 2687400 2270880 3386270 2626070 828380 FALSE FALSE TRUE 1711694.108 2789806.627 3912621.745 576353.9112 2886988.475 2828108.108 1785687.937 2555781.973 3153098.161 621880.1112 2.752450316 4.486084338 6.291601347 0.926792642 4.642355372 4.547674154 2.871434388 4.109766379 5.070266928 1 19.24627695 -5.219663212 24.99995477 3.528165573 4.507647452 0.097722439 1.576416688 1420.842657 850267.6166 0.417402396 0.722954214 6.03E-06 5.219663212 0.979481879 QEPQGQEIQSENLIMEK ddPTM_HeLa_A486_30min_R1 2 QEPQGQEIQSENLIMEK 17 0 Q4VCS5 Q4VCS5 AMOT Angiomotin 0 0 ; ; 58.09 0.021285 10045300000 1752750 2426100 2777500 42206 3686300 1602360 1361020 1944190 2037060 461790 FALSE FALSE TRUE 1629891.276 2233847 3853022.384 98257.70097 3223929.881 1404677.115 1020478.401 1501540.378 2213634.001 346154.7783 4.708562119 6.453318402 11.13092358 0.283854816 9.313550132 4.057945182 2.948040775 4.337771635 6.39492545 1 18.40105774 -8.4632055 0.219540169 6.58E-11 7.235734372 0.189002673 2.905271901 9.137233663 1.125156194 20.3943298 8.708296185 3.44E-09 8.4632055 7.235734372 QEPQS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 QEPQSPSR 8 0 Q8WUQ7-2;Q8WUQ7;K7ENY9 Q8WUQ7-2 CACTIN Cactin 1 0 QEPQS(0.998)PS(0.002)R 67.207 0.019199 91210000 85302 125100 120120 85608 134420 123060 127340 153100 110940 109870 TRUE FALSE FALSE 104277.1356 139729.3568 164557.3866 90284.54827 121036.6728 129503.2313 100132.7687 115551.9849 133204.6404 82481.43101 1.264249836 1.694070472 1.99508404 1.094604533 1.467441476 1.570089531 1.214003776 1.400945444 1.614965196 1 16.33178174 -12.40108007 0.187346688 3.91E-13 1.586186085 0.242862047 0.248656726 101.7842081 1.702920099 40.83276696 0.761470207 3.97E-13 12.40108007 1.586186085 QEPS(ph)PKPNNK ddPTM_HeLa_A485_30min_R1 5 QEPSPKPNNK 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK ;;;; 116.51 0.00021204 2512230000 5118990 2931678 2127133 10157030 4326230 3829257 6982150 4887270 3471663 13105040 TRUE FALSE FALSE 6257691.665 3274512.24 2914048.014 10711882.83 3895495.351 4029750.975 5490356.614 3688659.37 4168393.92 9838194.708 0.63606097 0.332836698 0.296197433 1.088805736 0.395956318 0.409602686 0.558065456 0.374932544 0.423695001 1 23.22996218 -10.67249219 2.813623182 1.059874542 0.500142805 0.318237586 0.218749192 98608149.78 90590072.82 42350362.7 0.055213954 2.13E-11 10.67249219 -0.559731737 QEPS(ph)PKPNNK ddPTM_HeLa_A486_30min_R1 5 QEPSPKPNNK 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK;QEPS(1)PKPNNK ;;;; 101.3 0.00072755 4632610000 8354840 6486490 3306310 5882630 5615870 12779850 13720780 10809920 7096280 16549710 TRUE FALSE FALSE 7769208.86 5972476.909 4586601.778 13695059.93 4911475.219 11203202.04 10287695.72 8348737.195 7711391.264 12405554.9 0.626268549 0.481435692 0.369721614 1.103945776 0.395909354 0.903079478 0.829281383 0.672983777 0.621607927 1 23.56448293 -5.224377353 24.99841479 0.765903416 0.491371319 0.316725913 0.197826576 720.9664619 486292.5609 0.051045202 0.088409932 5.97E-06 5.224377353 -0.274532097 QEPS(ph)PKPNNKTPAILYTYSGLR ddPTM_HeLa_A486_30min_R1 2 QEPSPKPNNKTPAILYTYSGLR 22 2 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 QEPS(0.998)PKPNNKT(0.002)PAILYTYSGLR;QEPS(1)PKPNNKTPAILYTYSGLR ; 165.34 3.54E-14 1358040000 1237280 866130 420570 738280 1169070 1090200 1804820 1673810 628040 2062480 TRUE FALSE FALSE 1150553.061 797494.7044 583425.9673 1718753.151 1022434.339 955702.2083 1353234.947 1292720.002 682479.0129 1546021.584 0.744202457 0.515836721 0.377372459 1.111726491 0.661332513 0.618168736 0.875301458 0.836159091 0.441442099 1 20.56012903 -14 0.161947848 2.048133727 0.618661961 0.145022857 0.210952931 270.7174521 2.500089288 92.9402664 0.882762443 1.00E-14 14 -1.429471766 QEPVKTEMGPPPS(ph)PASTCSDASSIASSASMPYKR ddPTM_HeLa_A486_30min_R1 2 QEPVKTEMGPPPSPASTCSDASSIASSASMPYKR 34 2 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 QEPVKTEMGPPPS(0.991)PAS(0.003)T(0.003)CS(0.003)DAS(0.001)S(0.001)IASSASMPYKR;QEPVKTEMGPPPS(0.892)PAS(0.034)T(0.034)CS(0.034)DAS(0.002)S(0.002)IAS(0.001)SASMPYKR ; 77.439 0.00028668 210483000 133742 108996 66097 48600 131481 107675 133785 125201 68664 136710 TRUE FALSE FALSE 124367.3764 100358.76 91691.52854 113143.2561 114989.427 94391.15326 100310.578 96695.46542 74615.85081 102476.9262 1.213613455 0.979330311 0.894752916 1.104085186 1.122100665 0.921096649 0.978860137 0.943582805 0.728123428 1 16.64493958 -6.848885055 1.360652609 0.878088386 1.046714095 0.303311357 0.107326711 0.582697797 2.146746012 0.071017062 0.038209226 1.42E-07 6.848885055 0.168625709 QEQINTEPLEDTVLS(ph)PTK ddPTM_HeLa_A485_30min_R1 3 QEQINTEPLEDTVLSPTK 18 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 QEQINTEPLEDTVLS(0.77)PT(0.23)K;QEQINTEPLEDTVLS(0.994)PT(0.005)K;QEQINTEPLEDTVLS(0.992)PT(0.007)K ;; 316.75 2.50E-89 681850000 498705 451235 342593 655730 635340 491316 789750 756630 429653 930370 TRUE FALSE FALSE 609640.2067 504003.008 469332.4072 691550.8695 572083.3188 517040.546 621013.4608 571065.3062 515880.4161 698445.8812 0.872852462 0.721606386 0.671966748 0.990128066 0.819080381 0.740272883 0.88913612 0.817622842 0.738611867 1 19.41378881 -11.53316621 2.236044318 4.006553623 0.806871961 0.296937589 0.089181143 5518762.261 695524.5392 83127123.58 0.022844935 2.93E-12 11.53316621 -3.199681661 QEQINTEPLEDTVLS(ph)PTK ddPTM_HeLa_A486_30min_R1 3 QEQINTEPLEDTVLSPTK 18 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 QEQINTEPLEDTVLS(0.998)PT(0.002)K;QEQINTEPLEDTVLS(0.912)PT(0.088)K;QEQINTEPLEDT(0.001)VLS(0.955)PT(0.044)K ;; 309.77 4.29E-89 723550000 826640 840100 469207 447875 746430 851050 1132820 1115490 703850 1215040 TRUE FALSE FALSE 768696.8048 773527.4164 650896.5162 1042675.634 652805.7892 746056.1038 849376.4543 861517.278 764860.2847 910786.0754 0.843992706 0.849296489 0.714653565 1.144808493 0.716749857 0.819134288 0.932575143 0.945905192 0.839780389 1 19.79675271 -13.99999966 0.116612962 1.432630935 0.800417795 0.116441901 0.116336419 359.0931109 2.734284198 36.61418198 1.209990028 1.00E-14 13.99999966 -0.63221314 QEQLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 QEQLSPK 7 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 QEQLS(1)PK;QEQLS(1)PK ; 93.556 0.0060146 1051370000 1754050 1569080 1169540 2774100 2190560 1722230 2836500 2703300 1404060 3534600 TRUE FALSE FALSE 2144232.371 1752570.257 1602201.515 2925642.059 1972460.155 1812403.3 2230458.603 2040311.436 1685841.963 2653489.269 0.808080287 0.660477612 0.603809306 1.102564119 0.743345819 0.683026429 0.840575701 0.768916407 0.635330236 1 21.33945928 -10.8221763 2.681180561 1.079056305 0.762973327 0.220249837 0.135026685 81520417.06 55960826.22 41603194.04 0.033898945 1.51E-11 10.8221763 -0.316082977 QEQLS(ph)PK ddPTM_HeLa_A486_30min_R1 4 QEQLSPK 7 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 QEQLS(1)PK;QEQLS(1)PK;QEQLS(1)PK;QEQLS(1)PK ;;; 109.79 0.0030414 2772380000 4624680 4555000 2353750 3132700 4311410 5182700 6884900 6271100 3509550 8277200 TRUE FALSE FALSE 4300513.814 4194045.211 3265185.036 7293083.918 3770632.755 4543311.168 5162225.199 4843307.427 3813760.62 6204535.244 0.693124246 0.675964443 0.526257795 1.175444031 0.60772203 0.732256485 0.832008361 0.78060761 0.614673053 1 22.56489172 -11.60471488 2.111091724 5.869027212 0.742483383 0.178054538 0.168860423 9703604.298 234340.2646 228675677.6 0.041186342 2.48E-12 11.60471488 -5.126543829 QERLS(ph)PEVAPPAHR ddPTM_HeLa_A485_30min_R1 8 QERLSPEVAPPAHR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR ;;;;;;; 135.43 5.26E-06 21057740000 3604710 4703340 4494640 3948030 5574290 4417390 5706620 6172850 4300270 5216070 TRUE FALSE FALSE 4406565.303 5253354.699 6157394.374 4163700.882 5019294.115 4648677.71 4487354.018 4658948.859 5163294.745 3915799.744 1.125329586 1.341578999 1.57244874 1.06330792 1.281805619 1.187159205 1.145961058 1.189782206 1.318579877 1 21.90087556 -5.288883923 24.96264041 1.181854002 1.34596525 0.267421237 0.13310966 986.4535481 897242.8424 0.036985669 0.054872372 5.14E-06 5.288883923 0.164111248 QERLS(ph)PEVAPPAHR ddPTM_HeLa_A486_30min_R1 6 QERLSPEVAPPAHR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR;QERLS(1)PEVAPPAHR ;;;;; 163.11 3.50E-12 22566800000 4168040 4480880 3843490 1353261 5144700 3860280 4720470 4734040 3795570 4413190 TRUE FALSE FALSE 3875881.92 4125798.75 5331792.26 3150459.998 4499403.754 3384037.902 3539358.478 3656202.435 4124573.064 3308098.499 1.171634376 1.247181349 1.61173927 0.9523477 1.360117831 1.022955605 1.069907223 1.105227803 1.246810839 1 21.65757076 -5.281463378 24.99301203 1.117929574 1.33388471 0.325411594 0.154636246 981.3866473 1224918.274 0.04262931 0.063314627 5.23E-06 5.281463378 0.215955136 QES(ph)DEESRPQNANYPR ddPTM_HeLa_A485_30min_R1 2 QESDEESRPQNANYPR 16 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 QES(0.999)DEES(0.001)RPQNANYPR;QES(1)DEESRPQNANYPR ; 247.89 3.35E-42 881540000 385530 532010 481120 424200 646820 556960 669620 749350 513360 649030 TRUE FALSE FALSE 471289.8184 594223.9416 659106.3091 447372.9719 582420.3297 586121.5644 526550.2167 565570.7376 616386.6432 487238.7655 0.96726667 1.219574434 1.352737827 0.918180169 1.195348915 1.202945262 1.080682109 1.160767118 1.26506076 1 18.8942694 -10.04249149 3.973747142 0.999976526 1.153468401 0.116521296 0.124946331 7302945.331 4615779.559 1362.315026 0.02941634 9.07E-11 10.04249149 0.153491875 QES(ph)DEESRPQNANYPR ddPTM_HeLa_A486_30min_R1 1 QESDEESRPQNANYPR 16 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 QES(0.98)DEES(0.02)RPQNANYPR 203.23 1.54E-25 490940000 319020 353340 281780 113320 348990 328240 405170 376920 281930 367110 TRUE FALSE FALSE 296658.3454 325340.0516 390892.7623 263814.6869 305216.42 287745.0861 303792.1805 291103.5441 306367.9194 275183.2665 1.078039189 1.182266842 1.420481584 0.958687242 1.109138735 1.045648922 1.103963131 1.057853364 1.113323216 1 18.07003322 -5.285034317 24.99094917 1.061768673 1.222463046 0.424839275 0.091150349 755.4098094 800102.5168 0.025472886 0.037805132 5.19E-06 5.285034317 0.160694373 QES(ph)DPEDDDVKKPALQSSVVATSK ddPTM_HeLa_A485_30min_R1 4 QESDPEDDDVKKPALQSSVVATSK 24 2 Q9H307 Q9H307 PNN Pinin 1 0 QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(0.999)DPEDDDVKKPALQSSVVATSK ;;; 256.77 2.22E-61 8336300000 2490440 1430360 675830 4477080 2005470 2299810 4689540 4212690 1397080 5762000 TRUE FALSE FALSE 3044429.786 1597628.16 925847.6406 4721651.544 1805798.365 2420224.495 3687581.469 3179521.172 1677461.141 4325639.442 0.703810345 0.369339188 0.214037174 1.091549956 0.417463912 0.559506757 0.852493953 0.73504073 0.387794952 1 22.04448199 -14 0.136724863 2.304237801 0.450052811 0.182280956 0.250207487 243.0020752 2.052930035 87.53366681 1.656478948 1.00E-14 14 -1.85418499 QES(ph)DPEDDDVKKPALQSSVVATSK ddPTM_HeLa_A486_30min_R1 6 QESDPEDDDVKKPALQSSVVATSK 24 2 Q9H307 Q9H307 PNN Pinin 1 0 QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(0.999)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK;QES(1)DPEDDDVKKPALQSSVVATSK ;;;;; 288.02 2.83E-76 38011920000 7927790 5903070 1501637 5136900 4257260 8545860 13113480 10574910 4253620 15543180 TRUE FALSE FALSE 7372092.86 5435289.235 2083111.062 11958962.8 3723274.753 7491558.681 9832348.604 8167233.842 4622327.206 11651066.56 0.632739743 0.466505723 0.178791448 1.026426443 0.319565143 0.642993381 0.843901162 0.70098594 0.396729963 1 23.47395869 -14 0.138636115 2.372879842 0.435282897 0.213584904 0.238826505 217.4165867 1.851941061 83.23290854 1.494382235 1.00E-14 14 -1.937596946 QES(ph)PPAAAVRPFTPQPSK ddPTM_HeLa_A485_30min_R1 1 QESPPAAAVRPFTPQPSK 18 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 QES(0.999)PPAAAVRPFT(0.001)PQPSK 58.904 0.012399 114400000 161790 139110 111980 230520 172390 118790 176870 136120 135010 292070 TRUE FALSE FALSE 197779.6273 155377.7044 153406.0619 243112.7239 155226.2463 125009.6607 139080.2796 102736.3566 162105.2686 219262.3241 0.902022854 0.708638408 0.699646246 1.10877564 0.707947646 0.570137442 0.634309976 0.468554536 0.739321127 1 17.74229841 -5.986657565 24.98827529 0.645439895 0.842641096 0.176346099 0.168631953 340.3876358 637488.5797 0.050840962 0.057618958 1.03E-06 5.986657565 0.1972012 QES(ph)PPAAAVRPFTPQPSKDTLLPPFR ddPTM_HeLa_A485_30min_R1 2 QESPPAAAVRPFTPQPSKDTLLPPFR 26 2 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 QES(0.981)PPAAAVRPFT(0.018)PQPS(0.001)KDTLLPPFR;QES(0.995)PPAAAVRPFT(0.005)PQPSKDTLLPPFR ; 97.243 0.0010204 880800000 207440 237970 205040 240700 312740 271450 358640 361900 224090 323930 TRUE FALSE FALSE 253584.3123 265798.5214 280892.8284 253848.8315 281602.5075 285662.7023 282013.6342 273143.4576 269062.8075 243180.2125 1.042783497 1.093010483 1.15508094 1.043871246 1.157999266 1.174695504 1.159689891 1.123214158 1.106433804 1 17.89166632 -4.39296976 3.31312288 1.122395394 1.0412381 0.133150221 0.052890599 0.463018975 8.282036972 0.013095499 0.077074193 4.05E-05 4.39296976 -0.081157294 QES(ph)PPAAAVRPFTPQPSKDTLLPPFR ddPTM_HeLa_A486_30min_R1 1 QESPPAAAVRPFTPQPSKDTLLPPFR 26 2 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 QES(0.998)PPAAAVRPFT(0.002)PQPSKDTLLPPFR 66.01 0.0065567 343650000 296230 288430 181940 145590 280620 299900 388330 398050 206730 367330 TRUE FALSE FALSE 275465.8067 265573.7564 252392.0405 338940.8777 245422.0229 262901.3872 291165.7267 307422.7044 224649.5229 275348.1771 1.000427203 0.964501596 0.916628696 1.230953774 0.891315227 0.954796178 1.05744563 1.11648716 0.815874379 1 18.07089753 QESCLGNS(ph)PPFEK ddPTM_HeLa_A485_30min_R1 1 QESCLGNSPPFEK 13 0 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 0 QESCLGNS(1)PPFEK 121.72 6.18E-05 227540000 1044500 1309400 1088400 1243900 1469100 1226700 1567200 1496400 1191100 1708400 TRUE FALSE FALSE 1276845.422 1462522.94 1491044.452 1311851.107 1322831.246 1290928.115 1232354.917 1129405.554 1430142.845 1282527.321 0.995569764 1.140344471 1.162582994 1.022864064 1.031425393 1.006550187 0.960880051 0.880609353 1.115097372 1 20.29055813 -5.683526946 1.88196938 0.986086045 1.101155892 0.27725644 0.069459243 0.395658516 2.880272701 0.02357664 0.032867999 2.07E-06 5.683526946 0.115069847 QESCLGNS(ph)PPFEK ddPTM_HeLa_A486_30min_R1 1 QESCLGNSPPFEK 13 0 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 0 QES(0.013)CLGNS(0.987)PPFEK 109.35 0.00033869 218900000 638000 707300 410890 233820 622720 711390 777760 737550 594560 805960 TRUE FALSE FALSE 593279.4946 651250.9721 569997.612 544344.7766 544612.651 623625.9347 583156.2217 569625.9656 646096.9395 604142.3701 0.982019345 1.077975994 0.943482266 0.901020692 0.901464088 1.032249956 0.965262909 0.942867102 1.069444839 1 19.20452904 -7.756723732 24.99409879 1.034722423 0.968682765 0.195854789 0.053837421 189.8647064 1006373.719 0.041786931 0.014621176 1.75E-08 7.756723732 -0.066039658 QESDKNGES(ph)ASPERDR ddPTM_HeLa_A485_30min_R1 1 QESDKNGESASPERDR 16 2 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 QESDKNGES(0.744)AS(0.256)PERDR 167.45 3.50E-12 831460000 613580 591080 519950 810190 883190 693850 990780 1083200 644640 1219900 TRUE FALSE FALSE 750068.7542 660201.6643 712301.1419 854448.6282 795256.5025 730178.9131 779091.7591 817543.5016 774013.335 915801.3806 0.819029945 0.72090049 0.777789985 0.933006486 0.868372247 0.797311435 0.85072132 0.892708309 0.845175986 1 19.80467521 -13.99999999 0.060830073 1.597311272 0.583958768 0.533693009 0.051640752 332.0705513 1.470765403 29.50449995 4.790716104 1.00E-14 13.99999999 -1.013352504 QESDKNGES(ph)ASPERDR ddPTM_HeLa_A486_30min_R1 2 QESDKNGESASPERDR 16 2 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 QESDKNGES(0.774)AS(0.226)PERDR;QESDKNGES(0.713)AS(0.287)PERDR ; 148.89 4.13E-08 1777070000 1543660 1379590 881610 740410 1480430 1695090 2150360 1878210 1199960 2049980 TRUE FALSE FALSE 1435457.405 1270266.264 1222993.002 1723711.898 1294740.665 1485967.03 1612317.184 1450582.584 1303973.499 1536651.665 0.93414626 0.826645552 0.795881741 1.12173236 0.84257265 0.967016185 1.049240515 0.943989205 0.84858106 1 20.55135873 -5.206539559 24.9998058 0.963426329 0.849666617 0.277206867 0.085151583 410.158717 186773.6451 0.022667772 0.039261716 6.22E-06 5.206539559 -0.113759712 QESDKNGESAS(ph)PER ddPTM_HeLa_A485_30min_R1 1 QESDKNGESASPER 14 1 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 QES(0.003)DKNGES(0.227)AS(0.77)PER 50.397 0.025645 359770000 248760 285820 173670 243900 231360 240200 316330 273300 237650 398180 TRUE FALSE FALSE 304095.8038 319244.1627 237917.76 257223.6394 208324.986 252776.5006 248743.5113 206272.7465 285344.1751 298921.054 1.017311426 1.067988215 0.795921722 0.860506933 0.696923095 0.845629631 0.83213781 0.690057605 0.954580386 1 18.18940499 -4.76167737 25 0.81973308 1.042649882 0.437513224 0.093228788 4.652942567 489026.2057 0.022494703 0.052094707 1.73E-05 4.76167737 0.222916802 QESDKNGESAS(ph)PERDR ddPTM_HeLa_A485_30min_R1 1 QESDKNGESASPERDR 16 2 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 QESDKNGES(0.078)AS(0.922)PERDR 173.18 1.67E-12 1152700000 663660 646440 556990 812050 924970 727860 1081400 1162700 726150 1301900 TRUE FALSE FALSE 811288.8774 722035.5347 763043.7793 856410.2353 832876.739 765969.6241 850350.0558 877546.002 871881.6444 977360.2897 0.830081686 0.738760867 0.780719032 0.876248242 0.852169612 0.783712652 0.870047683 0.8978736 0.892078033 1 19.89853096 -8.134984487 0.2208233 1.058287532 0.751232923 0.718275192 0.037372064 2.115409758 0.339072065 0.2265305 0.127793113 7.33E-09 8.134984487 -0.307054609 QESIPSKPSQDRPPS(ph)SSLEECPIPK ddPTM_HeLa_A485_30min_R1 1 QESIPSKPSQDRPPSSSLEECPIPK 25 2 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 QESIPS(0.001)KPS(0.012)QDRPPS(0.9)S(0.063)S(0.024)LEECPIPK 76.765 0.0034465 272830000 118130 86416 73661 156050 140250 121300 166560 182980 96336 200090 TRUE FALSE FALSE 144407.611 96521.59948 100911.2692 164574.6164 126286.2176 127651.0804 130973.0953 138103.8681 115669.7516 150211.2454 0.961363516 0.642572394 0.671795703 1.095621143 0.840724123 0.849810413 0.871926033 0.919397664 0.770047218 1 17.1966333 -13.99999966 0.069747931 1.467330912 0.673567751 0.099311118 0.1274236 734.8384068 3.683953843 56.94684651 7.132172347 1.00E-14 13.99999966 -0.793763161 QESIPSKPSQDRPPS(ph)SSLEECPIPK ddPTM_HeLa_A486_30min_R1 1 QESIPSKPSQDRPPSSSLEECPIPK 25 2 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 QESIPSKPS(0.002)QDRPPS(0.961)S(0.034)S(0.002)LEECPIPK 155.58 6.35E-10 199590000 173020 212660 106570 126340 183040 237120 278690 267760 168300 264410 TRUE FALSE FALSE 160892.1915 195808.0471 147836.758 294125.9049 160081.4164 207866.5453 208958.8143 206796.8932 182888.3795 198200.015 0.811766798 0.987931545 0.745896806 1.483985281 0.807676107 1.048771592 1.054282535 1.04337476 0.922746547 1 17.59659755 QESTEYRR ddPTM_HeLa_A485_30min_R1 9 QESTEYRR 8 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ;;;;;;;; ;;;;;;;; 185.81 1.48E-05 5693883000 2185356 3131170 2508111 2049375 2738886 2861315 3532661 4275326 2630276 2839621 FALSE FALSE TRUE 2671480.903 3497333.094 3435965.63 2161327.167 2466192.893 3011129.029 2777879.118 3226795.595 3158148.267 2131755.744 1.253183396 1.640588094 1.611800808 1.013871863 1.156883428 1.412511277 1.303094468 1.513679794 1.481477545 1 21.02361071 -5.22109664 24.99975156 1.292946601 1.515730511 0.226037969 0.193553454 851.1411079 527437.5237 0.054233597 0.093934073 6.01E-06 5.22109664 0.22278391 QESTEYRR ddPTM_HeLa_A486_30min_R1 4 QESTEYRR 8 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ;;; ;;; 144.66 0.00083894 1838480000 1079460 849025 1023480 443988 1096880 1230550 1134970 999884 1044230 1301310 FALSE FALSE TRUE 1003795.428 781745.1669 1419798.866 1033626.502 959299.0824 1078737.252 850988.5015 772232.2405 1134744.697 975453.5059 1.029055124 0.801417148 1.455526949 1.059636872 0.983439064 1.105882798 0.872402935 0.791664837 1.163299625 1 19.89571358 -6.752333974 24.95791773 0.939480581 1.072949733 0.090253799 0.176465998 439.3092458 1204149.158 0.068814469 0.052528311 1.77E-07 6.752333974 0.133469152 QETHCQS(ph)TPLKK ddPTM_HeLa_A485_30min_R1 2 QETHCQSTPLKK 12 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 QETHCQS(0.802)T(0.198)PLKK;QETHCQS(0.5)T(0.5)PLKK ; 186.77 4.20E-13 2517800000 4182300 3101600 2001350 4391600 4522400 4150800 6292400 6550300 3032500 6025200 TRUE FALSE FALSE 5112638.206 3464305.14 2741732.648 4631501.988 4072133.977 4368129.47 4947977.336 4943828.655 3641094.934 4523228.526 1.130307297 0.765892132 0.606145065 1.023937208 0.900271555 0.965710542 1.093903902 1.092986708 0.804977001 1 22.10892146 QETHCQST(ph)PLKK ddPTM_HeLa_A485_30min_R1 1 QETHCQSTPLKK 12 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 QETHCQS(0.382)T(0.618)PLKK 138.91 5.77E-06 1100500000 2052100 1465800 969030 2242400 2306400 1893500 2991500 2850900 1333200 2516500 TRUE FALSE FALSE 2508582.565 1637212.559 1327514.522 2364896.634 2076766.718 1992640.732 2352341.587 2151712.305 1600761.011 1889182.863 1.327866463 0.866624715 0.702692443 1.251809277 1.099293646 1.05476329 1.245163522 1.138964548 0.847329839 1 20.84933092 -4.237328178 23.52343738 1.034769089 1.327867237 0.226356666 0.167833832 5381.484943 5250120.007 0.044126167 2.42763798 5.79E-05 4.237328178 0.293098148 QETHCQST(ph)PLKK ddPTM_HeLa_A486_30min_R1 2 QETHCQSTPLKK 12 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 QETHCQS(0.147)T(0.853)PLKK;QETHCQS(0.026)T(0.974)PLKK ; 178.14 5.18E-12 2376350000 2090790 2079290 1046690 1005000 2026230 2541970 3305700 2915510 1573400 2763990 TRUE FALSE FALSE 1944236.418 1914519.488 1451996.399 2339690.79 1772081.34 2228367.586 2478578.896 2251712.018 1709783.579 2071868.913 0.938397408 0.924054353 0.700814801 1.12926584 0.855305723 1.075535026 1.196301021 1.086802357 0.825237334 1 20.9825013 -5.274740761 24.87087335 1.029970247 0.861385389 0.283445275 0.123204809 936.6777214 1751394.777 0.035416834 0.05287251 5.31E-06 5.274740761 -0.168584858 QETVADFT(ph)PK ddPTM_HeLa_A485_30min_R1 6 QETVADFTPK 10 0 O75400-3;O75400;F5H578;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK ;;;;; 190.24 3.14E-09 4487030000 4050444 3291610 2322797 5299662 2983885 3180819 4217244 3368730 2537418 6020000 TRUE FALSE FALSE 4951451.294 3676535.156 3182096.27 5589169.116 2686798.932 3347361.764 3316195.368 2542543.686 3046654.518 4519324.79 1.095617492 0.813514259 0.704108781 1.236726585 0.594513353 0.740677406 0.733781156 0.562593707 0.674139315 1 22.10767581 -5.804955904 24.99999959 0.697708326 0.933396949 0.308774008 0.175857461 169.1380984 97167.96706 0.052912912 0.059997969 1.57E-06 5.804955904 0.235688623 QETVADFT(ph)PK ddPTM_HeLa_A486_30min_R1 5 QETVADFTPK 10 0 O75400-3;O75400;F5H578;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK;QETVADFT(1)PK ;;;; 207.8 2.32E-13 4878320000 7282350 6789910 2691170 2721470 4185710 6942470 7823990 6258350 5062670 11396720 TRUE FALSE FALSE 6771894.871 6251852.803 3733263.096 6335719.695 3660699.222 6085978.637 5866344.948 4833460.324 5501506.312 8542907.132 0.792692086 0.731817952 0.437001484 0.74163509 0.428507435 0.712401357 0.686691879 0.565786359 0.643985265 1 23.02629567 -8.076318137 19.49950535 1.000000001 0.632419646 0.45534179 0.118762908 3078.330847 786524.0313 0.111307202 0.028739349 8.39E-09 8.076318137 -0.367580354 QEWDNTVTDLTVHRAT(ph)PEDLVR ddPTM_HeLa_A485_30min_R1 1 QEWDNTVTDLTVHRATPEDLVR 22 1 Q8N0Z3;C9IZF0;C9J5T2 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 QEWDNTVTDLT(0.014)VHRAT(0.986)PEDLVR 123.35 3.32E-06 90491000 16301 13141 14944 16321 18495 17834 16467 14577 15638 22036 TRUE FALSE FALSE 19927.10121 14677.72564 20472.40747 17212.5749 16653.57286 18767.76066 12948.69093 11001.96789 18776.40316 16542.83074 1.204576262 0.887255988 1.23753956 1.040485463 1.006694266 1.134495115 0.782737316 0.66505957 1.135017546 1 14.0139185 -6.756761792 24.99995228 0.867791898 1.07750525 0.26890909 0.14993618 141.1819058 754569.3469 0.056342339 0.042173198 1.75E-07 6.756761792 0.209713352 QEYDESGPSIVHR ddPTM_HeLa_A485_30min_R1 6 QEYDESGPSIVHR 13 0 P60709;Q6S8J3;A5A3E0;P0CG38;A0A2R8YFE2;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;; ;;;;; 278.82 1.30E-51 6886630000 3132460 3839440 4346200 3041020 5475380 3194850 4208430 3455060 4418040 4772980 FALSE FALSE TRUE 3829264.92 4288429.109 5954040.24 3207143.222 4930231.942 3362127.406 3309264.551 2607701.118 5304700.103 3583163.926 1.068682594 1.196827496 1.661671183 0.895059028 1.375943731 0.938312473 0.923559351 0.727764951 1.480451415 1 21.77280262 -6.273327013 24.64841306 0.991349293 1.241561658 0.15834286 0.257426452 1097.836357 2276301.753 0.08807602 0.078280874 5.33E-07 6.273327013 0.250212365 QEYDESGPSIVHR ddPTM_HeLa_A486_30min_R1 5 QEYDESGPSIVHR 13 0 P60709;Q6S8J3;A5A3E0;P0CG38;A0A2R8YFE2;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 223.06 9.38E-27 6080837000 2250928 3007928 2988640 317647.2 3684165 2465689 2632315 2786556 2733884 1797720 FALSE FALSE TRUE 2093149.571 2769568.831 4145921.447 739498.7346 3222062.672 2161497.36 1973681.945 2152118.029 2970859.266 1347559.211 1.553289499 2.05524834 3.076615419 0.54876901 2.391036065 1.604009192 1.464634674 1.597048955 2.204622433 1 20.36191723 -5.250238437 24.99905335 1.603628713 2.211070648 0.20624829 0.606942201 1303.338195 2908876.582 0.159568811 0.273159991 5.62E-06 5.250238437 0.607441935 QEYDESGPSIVHRK ddPTM_HeLa_A485_30min_R1 5 QEYDESGPSIVHRK 14 1 P60709;Q6S8J3;A5A3E0;P0CG38;A0A2R8YFE2;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 185.12 2.51E-17 2319788000 2099209 3647040 2474980 1374048 3687430 3363970 4318250 4933410 2575330 2200782 FALSE FALSE TRUE 2566170.8 4073529.603 3390578.095 1449108.763 3320296.522 3540102.268 3395620.611 3723483.462 3092175.109 1652167.55 1.553214624 2.465566887 2.052199909 0.877095524 2.009660898 2.14270173 2.055251969 2.253696039 1.871586879 1 20.65592857 QEYDESGPSIVHRK ddPTM_HeLa_A486_30min_R1 4 QEYDESGPSIVHRK 14 1 P60709;Q6S8J3;A5A3E0;P0CG38;A0A2R8YFE2;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 172.1 4.04E-12 1246950000 1961280 1818060 1506202 270628 2342740 1613040 2197070 2313050 1393134 1713310 FALSE FALSE TRUE 1823804.4 1673990.304 2089443.752 630035.6608 2048891.704 1414039.525 1647339.848 1786419.009 1513891.977 1284286.024 1.420092071 1.303440412 1.626930226 0.490572699 1.595354668 1.101031622 1.282689227 1.390982207 1.17878101 1 20.29253511 QFCQEGQPHVLEALS(ph)PPQTSGLS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 2 0 QFCQEGQPHVLEALS(0.999)PPQT(0.005)S(0.018)GLS(0.806)PS(0.172)R;QFCQEGQPHVLEALS(0.986)PPQT(0.014)S(0.01)GLS(0.793)PS(0.197)R ; 123.57 9.87E-06 1233350000 371798 514060 432680 318288 475360 356208 445770 474340 321144 390720 TRUE FALSE FALSE 454503.1824 574174.8453 592746.3373 335675.2675 428031.4893 374858.5001 350527.5979 358007.3713 385594.6551 293320.6947 1.54950943 1.957498587 2.020813219 1.144396811 1.459261133 1.277981768 1.195031937 1.220532263 1.314583874 1 18.16211934 -5.264992033 24.99989563 1.249507091 1.854096242 0.75293269 0.160440459 143.197918 1007680.652 0.043978357 0.068262063 5.43E-06 5.264992033 0.604589151 QFCQEGQPHVLEALS(ph)PPQTSGLS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 2 0 QFCQEGQPHVLEALS(1)PPQT(0.035)S(0.047)GLS(0.754)PS(0.165)R;QFCQEGQPHVLEALS(1)PPQT(0.001)S(0.005)GLS(0.935)PS(0.059)R ; 125.77 8.66E-06 1079030000 580320 692700 583980 235180 764740 556450 638000 657010 513110 612370 TRUE FALSE FALSE 539642.5648 637807.9292 810112.6955 547510.9253 668819.1783 487800.8566 478365.6519 507423.1654 557586.7879 459028.5661 1.175618697 1.389473284 1.76484157 1.192760028 1.457031714 1.062680828 1.042126105 1.105428295 1.214710432 1 18.80822441 -6.264319672 24.89558882 1.088899449 1.404791714 0.484253059 0.160298838 217.1594856 1876994.497 0.05589874 0.051484144 5.44E-07 6.264319672 0.315892265 QFCQEGQPHVLEALSPPQTSGLS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 QFCQEGQPHVLEALSPPQTSGLS(0.981)PS(0.019)R;QFCQEGQPHVLEALSPPQT(0.003)S(0.024)GLS(0.867)PS(0.106)R;QFCQEGQPHVLEALSPPQTS(0.001)GLS(0.985)PS(0.013)R;QFCQEGQPHVLEALSPPQT(0.001)S(0.003)GLS(0.981)PS(0.015)R ;;; 187.33 1.92E-20 2550530000 594255 841670 879740 640806 1072180 931200 1120530 1230960 807080 1028210 TRUE FALSE FALSE 726444.9746 940095.9849 1205192.435 675811.6092 965429.9945 979956.1921 881119.6116 929065.1299 969053.553 771896.1698 0.941117475 1.217904715 1.56134009 0.875521392 1.250725204 1.269544053 1.141500173 1.203614121 1.255419564 1 19.55804727 -11.21633474 2.237685523 0.401758968 1.19618265 0.093038792 0.177933947 11938738.39 2651862.84 36020226.26 0.045893708 6.08E-12 11.21633474 0.794423682 QFCQEGQPHVLEALSPPQTSGLS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 QFCQEGQPHVLEALSPPQT(0.012)S(0.056)GLS(0.924)PS(0.007)R;QFCQEGQPHVLEALSPPQTSGLS(0.972)PS(0.027)R;QFCQEGQPHVLEALSPPQTS(0.006)GLS(0.982)PS(0.012)R;QFCQEGQPHVLEALSPPQTSGLS(0.988)PS(0.012)R ;;; 240.91 1.36E-49 2261740000 737890 865200 720200 257222 1068720 820620 905130 971030 864430 1001690 TRUE FALSE FALSE 686167.7215 796638.401 999080.7276 598825.8153 934671.1722 719380.2479 678656.9005 749947.6664 939359.4884 750860.3041 0.913842053 1.060967528 1.330581364 0.797519608 1.244800354 0.958074683 0.903839099 0.998784544 1.25104428 1 19.518185 -5.264606842 24.99970004 1.023653612 1.097714023 0.048492142 0.161545501 1049.397914 8282557.91 0.044493334 0.069380714 5.44E-06 5.264606842 0.074060411 QFFLQFHFK ddPTM_HeLa_A485_30min_R1 2 QFFLQFHFK 9 0 Q15428 Q15428 SF3A2 Splicing factor 3A subunit 2 0 0 ; ; 152.34 4.07E-05 286160000 774540 776910 635270 771280 838230 717520 1132980 1131150 446710 1034310 FALSE FALSE TRUE 946833.7509 867762.8663 870282.8088 813413.0734 754772.878 755088.2377 890909.5674 853733.6889 536360.5995 776475.5521 1.219399308 1.117566244 1.120811604 1.047570746 0.972049765 0.972455908 1.147376199 1.09949848 0.690763023 1 19.56658098 -1 0.277238281 0.950534036 2.945389202 0.347198508 0.112125832 64.36986716 0.905379991 0.12802516 62.00300977 0.1 1 1.994855166 QFFLQFHFK ddPTM_HeLa_A486_30min_R1 2 QFFLQFHFK 9 0 Q15428 Q15428 SF3A2 Splicing factor 3A subunit 2 0 0 ; ; 148.52 7.65E-05 230870000 406631 483490 397482 278109 611200 552620 705760 622670 473918 710590 FALSE FALSE TRUE 378128.2667 445176.4916 551397.6753 647451.8069 534537.5968 484443.363 529171.3832 480901.6338 514997.5938 532653.6388 0.70989521 0.835771051 1.035189915 1.215521231 1.003536929 0.909490385 0.993462439 0.902841169 0.966852672 1 19.02283819 -4.573002918 3.529537163 1.003274197 0.727705767 0.576644482 0.082131228 0.17496104 4.326260064 0.024037893 0.085323945 2.67E-05 4.573002918 -0.27556843 QFIAAQNLGPASGHGT(ph)PAS(ph)SPSSSSLPSPMSPTPR ddPTM_HeLa_A486_30min_R1 1 QFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPR 35 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 2 0 QFIAAQNLGPAS(0.149)GHGT(0.851)PAS(0.64)S(0.359)PS(0.001)SSSLPSPMSPTPR 139.7 6.68E-07 368990000 60718 85042 85173 11899 109190 76433 90162 94178 61600 67697 TRUE FALSE FALSE 56461.98175 78302.9622 118154.2666 27701.47334 95494.37204 67003.47357 67602.51396 72735.72529 66939.5376 50745.23057 1.112655931 1.543060527 2.328381708 0.545893142 1.881839357 1.320389578 1.332194439 1.433350967 1.319129637 1 15.63098461 -9.413878564 0.295503698 0.828156267 1.513694974 0.084221953 0.438726352 21.96981917 2.253947257 4.260554292 0.527372009 3.86E-10 9.413878564 0.685538707 QFIAAQNLGPASGHGT(ph)PASS(ph)PSSSSLPSPMSPTPR ddPTM_HeLa_A485_30min_R1 2 QFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPR 35 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 2 0 QFIAAQNLGPAS(0.001)GHGT(0.999)PAS(0.073)S(0.909)PS(0.01)S(0.002)S(0.003)S(0.003)LPSPMSPTPR;QFIAAQNLGPAS(0.001)GHGT(0.998)PAS(0.247)S(0.743)PS(0.005)S(0.004)S(0.001)SLPSPMSPTPR ; 145.17 3.71E-09 1024580000 228545 322946 323295 184409 408910 276810 367250 437890 305125 327837 TRUE FALSE FALSE 279384.0468 360711.7254 442895.2739 194482.7967 368197.4846 291303.3436 288784.0373 330496.7909 366360.7887 246113.2693 1.135184818 1.465632985 1.799558696 0.790216624 1.496048895 1.183614944 1.173378576 1.342864576 1.488586088 1 17.90896292 -5.243340249 24.95438977 1.23416812 1.466676155 0.176660544 0.249800346 1559.32617 2149936.686 0.066210973 0.114374091 5.71E-06 5.243340249 0.232508035 QFIAAQNLGPASGHGT(ph)PASS(ph)PSSSSLPSPMSPTPR ddPTM_HeLa_A486_30min_R1 1 QFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPR 35 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 2 0 QFIAAQNLGPAS(0.048)GHGT(0.952)PAS(0.231)S(0.768)PS(0.001)SSSLPSPMSPTPR 163.18 5.29E-14 303820000 92861 92728 77122 13837 122880 96136 88032 89593 102480 78667 TRUE FALSE FALSE 86351.92343 85379.89557 106985.7038 32213.23528 107467.2446 84275.71776 66005.46249 69194.6297 111363.0489 58968.27116 1.464379432 1.447895519 1.814292698 0.546280816 1.822458798 1.429170571 1.119338607 1.173421373 1.888524909 1 15.84765128 -10.86884127 2.683913569 0.824008197 1.39618078 0.093630824 0.381567868 88181326.02 65888900.55 99460699.89 0.091892708 1.35E-11 10.86884127 0.572172583 QFIAAQNLGPASGHGTPASSPSSSSLPSPMS(ph)PTPR ddPTM_HeLa_A485_30min_R1 5 QFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPR 35 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 QFIAAQNLGPASGHGTPASS(0.021)PS(0.003)SSSLPS(0.016)PMS(0.921)PT(0.039)PR;QFIAAQNLGPASGHGTPASSPSSSSLPS(0.001)PMS(0.997)PT(0.001)PR;QFIAAQNLGPASGHGTPASSPSS(0.004)SS(0.001)LPS(0.089)PMS(0.752)PT(0.153)PR;QFIAAQNLGPASGHGTPASSPSSSSLPS(0.003)PMS(0.987)PT(0.009)PR;QFIAAQNLGPASGHGTPASSPSSSSLPSPMS(0.999)PT(0.001)PR ;;;; 341.54 1.76E-129 6056050000 586259 1087189 1140315 253375 1276178 764366 1045618 1024393 875070 594506 TRUE FALSE FALSE 716670.292 1214326.296 1562164.971 267216.2347 1149117.237 804387.0218 822213.1724 773159.0106 1050688.522 446306.5953 1.605780196 2.720834308 3.500205884 0.598727954 2.574726095 1.80231937 1.842260861 1.732349508 2.354185516 1 18.7676756 -10.34060359 0.161501938 3.76E-12 2.525865844 0.160238379 0.737296056 55.83621643 1.668510009 28.99236779 3.954916116 4.56E-11 10.34060359 2.525865844 QFIAAQNLGPASGHGTPASSPSSSSLPSPMS(ph)PTPR ddPTM_HeLa_A486_30min_R1 2 QFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPR 35 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 QFIAAQNLGPASGHGTPASSPSSSSLPS(0.001)PMS(0.993)PT(0.007)PR;QFIAAQNLGPASGHGTPASSPSSSSLPS(0.092)PMS(0.906)PT(0.001)PR ; 375.14 4.13E-171 3730600000 471850 591710 661710 12102.9 813150 422760 552050 481470 605240 153314 TRUE FALSE FALSE 438775.7516 544820.7446 917941.8332 28176.16285 711157.1447 370604.1695 413921.251 371849.7914 657702.6905 114923.1765 3.817991854 4.74073865 7.98743875 0.245173895 6.188109017 3.224799216 3.601721286 3.235637952 5.722976954 1 16.81031025 -10.79313528 2.493533662 8.40E-15 4.279923001 0.202095504 1.970734881 8371113.925 5354451.96 50601919.25 0.469515415 1.61E-11 10.79313528 4.279923001 QFLFRPWDVTK ddPTM_HeLa_A485_30min_R1 1 QFLFRPWDVTK 11 1 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 113.65 0.0017012 29021000 19244 22557 17198 23865 27142 25553 30771 29137 18825 33388 FALSE FALSE TRUE 23524.76141 25194.84493 23560.25587 25168.68452 24439.64718 26890.91557 24196.52447 21991.10506 22603.00483 25064.98606 0.938550748 1.005180887 0.939966845 1.004137184 0.975051297 1.072847817 0.965351603 0.877363547 0.901776078 1 14.61338581 -7.011098318 24.89768302 0.918013391 0.990405829 0.265565637 0.046162972 577.5941727 1295756.861 0.020058492 0.012496641 9.75E-08 7.011098318 0.072392438 QFLLQQASGLS(ph)SPGNNDSK ddPTM_HeLa_A485_30min_R1 1 QFLLQQASGLSSPGNNDSK 19 0 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2;A2A312 B7ZBM3 FOXP4 Forkhead box protein P4 1 0 QFLLQQAS(0.001)GLS(0.59)S(0.409)PGNNDSK 75.574 0.00076973 0 28607 32126 23183 38355 46407 36984 46661 50925 30556 57814 TRUE FALSE FALSE 34970.52846 35882.85624 31759.35643 40450.23653 41786.55614 38920.42505 36691.49616 38435.5639 36688.30892 43402.03379 0.805734787 0.82675518 0.731748115 0.931989425 0.962778757 0.896741965 0.845386563 0.885570572 0.845313128 1 15.40547503 -1 0.028393538 1.484337301 1.39E-06 0.380354256 0.059187362 1872.326202 4.0894718 69.85751044 161.4845328 0.1 1 -1.48433591 QFLSVAEDT(ph)SDHRR ddPTM_HeLa_A485_30min_R1 1 QFLSVAEDTSDHRR 14 1 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 QFLSVAEDT(0.5)S(0.5)DHRR 99.663 0.00061121 75609000 16773 25046 26578 16055 29938 24351 27533 26114 26895 24485 TRUE FALSE FALSE 20504.09598 27974.91183 36410.3082 16932.044 26957.2676 25625.98071 21650.34963 19709.50055 32292.5798 18381.34011 1.115484282 1.521919058 1.980829906 0.921153947 1.466556162 1.394130164 1.177843916 1.072255909 1.756813138 1 14.16595433 -5.274243333 24.99851253 1.269876939 1.537661926 0.155950176 0.30134261 1472.963802 2875819.893 0.083408984 0.124634119 5.32E-06 5.274243333 0.267784987 QFLSVAEDT(ph)SDHRR ddPTM_HeLa_A486_30min_R1 2 QFLSVAEDTSDHRR 14 1 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 QFLSVAEDT(0.5)S(0.5)DHRR;QFLSVAEDT(0.5)S(0.5)DHRR ; 129.88 1.76E-05 132875000 56318 64413 56574 18283.7 73197 55311 63626 59417 52971 59317 TRUE FALSE FALSE 52370.39903 59308.67929 78480.9679 42565.37761 64015.94973 48487.29118 47706.10183 45889.04616 57562.56893 44463.63711 1.177825352 1.333869273 1.765059563 0.957307597 1.43973714 1.090493138 1.072923965 1.03205786 1.294598748 1 15.44033834 -6.014668034 1.219718987 1.09619385 1.373406894 0.221627301 0.208160919 0.688442538 2.140911462 0.092609961 0.104448518 9.67E-07 6.014668034 0.277213044 QFQFGHALKPQVSSIFTSFLDGLKK ddPTM_HeLa_A485_30min_R1 1 QFQFGHALKPQVSSIFTSFLDGLKK 25 2 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 0 0 240.13 8.39E-51 12791000 34650 23781 17795 38757 29112 34374 53296 51501 14156 53302 FALSE FALSE TRUE 42357.77296 26561.98108 24378.11101 40874.19677 26213.50706 36173.76949 41908.87421 38870.299 16996.97935 40014.79235 1.058552862 0.663804047 0.609227478 1.021477168 0.655095417 0.904009926 1.047334542 0.971398243 0.424767401 1 15.2882458 QFQFGHALKPQVSSIFTSFLDGLKK ddPTM_HeLa_A486_30min_R1 1 QFQFGHALKPQVSSIFTSFLDGLKK 25 2 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 0 0 223.75 4.18E-43 9764400 17741 19221 9678.5 11024 19194 23405 36139 26780 17918 36441 FALSE FALSE TRUE 16497.44751 17697.85796 13426.2744 25664.42912 16786.50954 20517.52906 27096.63996 20682.7786 19471.14667 27315.93641 0.60394955 0.647894976 0.491517999 0.939540521 0.614531726 0.751119374 0.99197185 0.75716894 0.71281271 1 14.73745526 -3.180959754 0.124130511 1.062107513 3.57E-15 0.401494517 0.128367161 54.09885636 0.798418806 1.009552275 9.598484092 0.000659235 3.180959754 -1.062107513 QFS(ph)ALVPAFDPRPGR ddPTM_HeLa_A485_30min_R1 2 QFSALVPAFDPRPGR 15 1 A0A087X2H1;Q9ULT8;H0YJD4;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 QFS(1)ALVPAFDPRPGR;QFS(1)ALVPAFDPRPGR ; 135.98 4.48E-06 562060000 208476 184988 156468 202028 272250 177976 290360 293110 158288 252740 TRUE FALSE FALSE 254850.767 206620.7374 214352.0244 213064.2781 245143.8341 187294.5482 228322.214 221224.3129 190054.9497 189736.5693 1.343182117 1.088987422 1.129734901 1.122947879 1.292022065 0.987129412 1.2033643 1.165955059 1.001678013 1 17.53363824 -5.983536645 0.02224488 1.21E-06 2.295311448 0.300107832 0.096756435 829.7132603 6.068530375 289.6444674 335.7560868 1.04E-06 5.983536645 2.295310238 QFS(ph)ALVPAFDPRPGR ddPTM_HeLa_A486_30min_R1 1 QFSALVPAFDPRPGR 15 1 A0A087X2H1;Q9ULT8;H0YJD4;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 QFS(1)ALVPAFDPRPGR 93.269 0.00018912 0 61240 71084 51531 26451 65575 74157 82522 82332 54214 68719 TRUE FALSE FALSE 56947.39224 65451.04496 71485.18325 61579.26476 57349.97204 65008.26331 61874.12277 63586.80089 58913.31317 51511.31511 1.105531709 1.270614909 1.387756905 1.195451225 1.113347075 1.262019096 1.201175366 1.234423947 1.143696546 1 15.65260175 -8.091191443 2.565955112 1.000114532 1.224934055 0.439366026 0.076415688 0.380052127 5.519930169 0.076324782 0.020663293 8.11E-09 8.091191443 0.224819524 QFS(ph)RIEEVFK ddPTM_HeLa_A486_30min_R1 2 QFSRIEEVFK 10 1 A0A1B0GVK0;Q14314 A0A1B0GVK0 FGL2 Fibroleukin 1 0 QFS(1)RIEEVFK;QFS(1)RIEEVFK ; 48.948 0.024964 446720000 470510 754680 1027230 38195 978890 301880 221720 354020 687530 44186 TRUE FALSE FALSE 437529.6787 694876.4083 1425000.966 88919.89027 856108.4884 264637.1149 166243.3109 273417.3742 747125.654 33121.538 13.20982373 20.97959365 43.02339361 2.684654628 25.84748596 7.989880026 5.019190561 8.254972164 22.55709424 1 15.01548205 -5.884504655 1.339133916 9.507818039 23.40359502 0.210087594 11.0327058 0.675497435 2.531830109 4.470313312 5.608796663 1.30E-06 5.884504655 13.89577698 QFSMFLGK ddPTM_HeLa_A486_30min_R1 2 QFSMFLGK 8 0 A0A0A0MTN3;P21266 A0A0A0MTN3 GSTM3 Glutathione S-transferase Mu 3 0 0 ; ; 126.41 0.0036696 32183000 39223 51187 42123 21802 61053 53797 61536 59737 46201 55143 FALSE FALSE TRUE 36473.67025 47130.7557 58434.15369 50756.15781 53395.16344 47160.07311 46139.04194 46136.18915 50205.73988 41334.83388 0.882395472 1.140218825 1.413678203 1.227926982 1.291771575 1.140928091 1.116226621 1.116157604 1.214610902 1 15.33507047 -6.499796201 23.13379194 1.1224498 1.204124857 0.06590888 0.135396017 894.2481768 896236.628 0.050219585 0.043920224 3.16E-07 6.499796201 0.081675057 QFTPCQLLADHANS(ph)PNKK ddPTM_HeLa_A485_30min_R1 1 QFTPCQLLADHANSPNKK 18 1 A0A2R8Y4F5;H0YFD6;P40939 A0A2R8Y4F5 HADHA "Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase" 1 0 QFTPCQLLADHANS(1)PNKK 227.87 8.28E-35 373720000 275980 158020 99204 413760 225820 314150 465720 495460 121130 660970 TRUE FALSE FALSE 337370.7989 176499.0644 135903.6878 436362.6611 203336.5679 330598.4082 366215.1174 373947.6581 145439.6799 496202.3433 0.679905695 0.35569978 0.273887638 0.879404676 0.409785586 0.666257249 0.738035848 0.753619291 0.293105589 1 18.92056902 -5.25097977 24.98834312 0.657846783 0.428417927 0.20221544 0.216521201 1175.610965 2808566.935 0.056511697 0.096563751 5.61E-06 5.25097977 -0.229428856 QFTPCQLLADHANS(ph)PNKK ddPTM_HeLa_A486_30min_R1 2 QFTPCQLLADHANSPNKK 18 1 A0A2R8Y4F5;H0YFD6;P40939 A0A2R8Y4F5 HADHA "Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase" 1 0 QFTPCQLLADHANS(1)PNKK;QFTPCQLLADHANS(1)PNKK ; 208.97 1.26E-25 939930000 447810 605440 269240 415560 578560 805380 1071070 902630 641900 1281930 TRUE FALSE FALSE 416420.8315 557462.7294 373496.9385 967444.6812 505991.6099 706020.4041 803076.9574 697120.8533 697540.4088 960926.384 0.433353521 0.580130527 0.388684237 1.006783347 0.526566466 0.73472892 0.83573203 0.725467491 0.725904107 1 19.87406639 -4.063189288 0.174430909 0.991119026 1.41E-23 0.451602474 0.1512855 19.97437245 0.581068423 0.463395955 4.47179567 8.65E-05 4.063189288 -0.991119026 QFYINVER ddPTM_HeLa_A485_30min_R1 2 QFYINVER 8 0 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KTB5;J3KSZ0;J3KTN0 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 ; ; 148.99 0.00056515 60859000 44599 57310 59079 54689 76606 44653 58763 49311 59841 83142 FALSE FALSE TRUE 54519.89369 64011.90597 80934.78058 57676.52159 68978.83766 46990.96203 46207.805 37217.39993 71850.53981 62416.22952 0.873489061 1.025565089 1.296694485 0.924062893 1.105142656 0.752864478 0.740317148 0.596277606 1.151151557 1 15.92963359 -6.260060539 24.99754008 0.816151692 1.051176949 0.224876864 0.177680608 164.1465674 2975898.207 0.059409438 0.056348883 5.49E-07 6.260060539 0.235025258 QGAIYHGLATLLNQPS(ph)PMMQR ddPTM_HeLa_A485_30min_R1 2 QGAIYHGLATLLNQPSPMMQR 21 0 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 1 0 QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR ; 128.49 7.46E-07 856830000 443952 472440 475021 519379 698466 505881 658849 695124 507402 728308 TRUE FALSE FALSE 542707.5908 527687.7483 650751.0352 547751.3596 628924.2726 532368.1469 518080.5288 524643.7491 609232.9272 546754.2191 0.992598816 0.965127895 1.190207615 1.001823745 1.150287004 0.973688228 0.947556527 0.959560495 1.114272018 1 19.06053292 QGAIYHGLATLLNQPS(ph)PMMQR ddPTM_HeLa_A486_30min_R1 2 QGAIYHGLATLLNQPSPMMQR 21 0 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 1 0 QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR ; 171.63 5.69E-14 762510000 291413 270335 275262 112839 358730 303032 338384 313336 263471 329996 TRUE FALSE FALSE 270986.4536 248912.6701 381850.8182 262694.8946 313734.7384 265646.9928 253716.7441 241996.2329 286308.8784 247362.8537 1.095501808 1.006265356 1.543686986 1.061981986 1.268317913 1.073916269 1.025686518 0.978304662 1.15744492 1 17.91626934 -6.418002765 5.475619392 1.039915376 1.196130081 0.209557994 0.144810816 0.377289516 16.2669015 0.051671052 0.045127815 3.82E-07 6.418002765 0.156214704 QGDDS(ph)S(ph)DEEDKER ddPTM_HeLa_A485_30min_R1 2 QGDDSSDEEDKER 13 1 Q12846;H3BMK2;A0A087WWW0 Q12846 STX4 Syntaxin-4 2 0 QGDDS(1)S(1)DEEDKER;QGDDS(1)S(1)DEEDKER ; 131.18 7.99E-05 428170000 774030 517210 238220 1579390 492300 541520 1166510 918510 375690 3061200 TRUE FALSE FALSE 946210.3031 577693.2104 326347.4912 1665668.076 443284.8834 569873.1499 917275.609 693243.9823 451087.537 2298099.177 0.411736061 0.251378712 0.142007575 0.724802521 0.192891973 0.247975873 0.399145354 0.301659732 0.196287237 1 21.13200963 -10.28577493 4.056314693 1.00086176 0.319515201 0.623853323 0.158716812 427938432.7 758844983.3 4518022.261 0.038747572 5.18E-11 10.28577493 -0.681346559 QGDDS(ph)S(ph)DEEDKER ddPTM_HeLa_A486_30min_R1 1 QGDDSSDEEDKER 13 1 Q12846;H3BMK2;A0A087WWW0 Q12846 STX4 Syntaxin-4 2 0 QGDDS(1)S(1)DEEDKER 119.46 0.00026475 0 290190 249190 128410 260240 268780 391570 448540 380780 280920 1032700 TRUE FALSE FALSE 269849.1795 229443.2769 178133.7909 605851.8718 235067.1061 343262.0746 336310.5478 294084.7064 305270.3718 774105.1983 0.348594972 0.296398057 0.230115741 0.782647983 0.303662999 0.443430784 0.434450703 0.379902766 0.394352567 1 19.56217011 -11.13609359 2.153489037 2.171924657 0.403272881 0.61540062 0.141934263 10919976.31 2596245.806 62501525.52 0.038851939 7.31E-12 11.13609359 -1.768651776 QGDETPSTNNGS(ph)DDEKTGLK ddPTM_HeLa_A486_30min_R1 2 QGDETPSTNNGSDDEKTGLK 20 1 Q9Y3P9;Q9Y3P9-3;C9JGR5;B5MCD9;Q9Y3P9-4 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 QGDET(0.002)PS(0.026)T(0.026)NNGS(0.946)DDEKTGLK;QGDETPS(0.006)T(0.006)NNGS(0.988)DDEKTGLK ; 126.5 3.02E-07 1799100000 1521810 1274940 513530 1012800 1106640 1704320 2372900 2089890 848100 2772700 TRUE FALSE FALSE 1415138.978 1173909.111 712382.5688 2357849.584 967834.8922 1494058.327 1779175.322 1614067.669 921613.9909 2078397.873 0.680879728 0.564814431 0.342755628 1.134455349 0.465663916 0.71885097 0.856032113 0.776592245 0.443425199 1 20.98704043 -14 0.210568754 2.500093769 0.62724408 0.15909979 0.220138805 279.8067534 2.790264068 178.8134675 0.461894977 1.00E-14 14 -1.872849689 QGDGK(ac)WHLVYR ddPTM_HeLa_A485_30min_R1 2 QGDGKWHLVYR 11 1 Q5JX58;Q5JX59;Q5JX61;Q5JX60;Q5JX44;Q5JX52;Q5JX45;E7ENH5;A6PVH9;F2Z2V0;B0QZ18;Q99829 Q5JX58 CPNE1 Copine-1 0 1 ; QGDGK(1)WHLVYR;QGDGK(1)WHLVYR 91.961 0.0086974 43264000 26550 39569 41199 23376 43092 33794 38617 40199 31160 34115 FALSE TRUE FALSE 32455.9559 44196.25035 56440.22453 24652.97169 38801.60917 35563.40158 30366.16248 30340.13222 37413.52618 25610.75834 1.267278207 1.725690812 2.203770142 0.962602175 1.515051162 1.388611814 1.185679943 1.184663563 1.460851947 1 14.64446235 -5.274674622 24.99895698 1.265266191 1.73159087 0.406789232 0.270043966 777.680914 1468895.422 0.075664274 0.11296633 5.31E-06 5.274674622 0.466324679 QGEVPES(ph)PEAR ddPTM_HeLa_A485_30min_R1 2 QGEVPESPEAR 11 0 H7BYP4;U5Y3L1;Q9H930-3;Q9H930-1;Q9H930-2;Q9H930 H7BYP4 SP140L Nuclear body protein SP140-like protein 1 0 QGEVPES(1)PEAR;QGEVPES(1)PEAR ; 187.63 8.67E-15 499680000 547470 625020 647570 615610 854930 682820 881240 831100 618450 819190 TRUE FALSE FALSE 669252.8128 698110.652 887133.0906 649239.2155 769810.1674 718571.3994 692955.8749 627271.4219 742567.2422 614981.0091 1.08824956 1.135174325 1.442537375 1.055706121 1.251762503 1.168444861 1.126792315 1.019985028 1.207463696 1 19.23018233 -6.812173927 2.804892057 1.083840881 1.197895828 0.173510423 0.112245758 0.487865241 7.808583431 0.051153324 0.033490862 1.54E-07 6.812173927 0.114054947 QGEVPES(ph)PEAR ddPTM_HeLa_A486_30min_R1 1 QGEVPESPEAR 11 0 H7BYP4;U5Y3L1;Q9H930-3;Q9H930-1;Q9H930-2;Q9H930 H7BYP4 SP140L Nuclear body protein SP140-like protein 1 0 QGEVPES(1)PEAR 107.46 0.00054377 0 199160 220790 195400 72881 276940 209670 194990 206640 193770 192590 TRUE FALSE FALSE 185199.9125 203293.7963 271064.113 169670.6512 242203.6028 183803.0472 146201.4396 159592.5829 210566.1396 144364.2104 1.282865829 1.408200798 1.877640671 1.175295807 1.677726093 1.273189848 1.012726348 1.105485788 1.458575771 1 17.1393536 -6.497790222 9.571206128 1.151437761 1.484054113 0.355019323 0.21739473 0.466287901 172.9044769 0.07613184 0.065356593 3.18E-07 6.497790222 0.332616352 QGFYY(ph)PLGIVR ddPTM_HeLa_A485_30min_R1 2 QGFYYPLGIVR 11 0 Q9BYK8;Q9BYK8-2;Q9BYK8-4 Q9BYK8 HELZ2 Helicase with zinc finger domain 2 1 0 QGFY(0.019)Y(0.981)PLGIVR;QGFY(0.103)Y(0.897)PLGIVR ; 42.001 0.026362 47899000 25810 32156 32242 27388 37253 30120 39880 45483 28580 35980 TRUE FALSE FALSE 31551.34546 35916.36448 44169.6575 28884.13709 33543.96052 31697.03663 31359.31221 34328.22294 34315.74385 27010.84816 1.168099027 1.329701469 1.635256221 1.069353206 1.241869945 1.173492829 1.160989541 1.270905035 1.270443032 1 14.72125132 -5.297973321 24.99974733 1.183684099 1.372887594 0.333805762 0.133638058 698.3144036 477846.7801 0.037469738 0.055578544 5.04E-06 5.297973321 0.189203495 QGGLLVNFHPSILTCLLPQLTSPR ddPTM_HeLa_A485_30min_R1 2 QGGLLVNFHPSILTCLLPQLTSPR 24 0 Q86VP6-2;Q86VP6;H0YH27;Q86VP6-3 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 ; ; 207.55 8.28E-36 16761800 13831.1 25647.9 30724.9 6419.1 33153.6 15881.5 23729 20913.4 20421.3 17615 FALSE FALSE TRUE 16907.78048 28647.1988 42091.31908 6769.759179 29852.71117 16713.03078 18659.1053 15784.35586 24519.66759 13223.90468 1.278577008 2.166319214 3.182972057 0.511933453 2.25748082 1.263849913 1.411013294 1.193622931 1.854192705 1 13.69086061 -5.265332681 24.99962342 1.400093632 2.204992375 0.286825992 0.613817571 443.4159826 2847260.914 0.166787777 0.258259145 5.43E-06 5.265332681 0.804898743 QGGLLVNFHPSILTCLLPQLTSPR ddPTM_HeLa_A486_30min_R1 1 QGGLLVNFHPSILTCLLPQLTSPR 24 0 Q86VP6-2;Q86VP6;H0YH27;Q86VP6-3 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 193.47 3.57E-35 12362000 9459.2 16785 14171 967.4 17857 8991.6 11379 10914 12076 8391.2 FALSE FALSE TRUE 8796.158927 15454.89547 19658.39071 2252.15609 15617.20855 7882.307812 8531.853845 8429.120451 13122.7574 6289.988902 1.398437909 2.457062438 3.12534585 0.358054064 2.482867425 1.253151307 1.356417949 1.340085107 2.086292616 1 12.61884176 -5.248294343 24.99707923 1.460963587 2.339959981 0.281552697 0.667079974 1049.090293 1994985.291 0.174506994 0.299928568 5.65E-06 5.248294343 0.878996394 QGHDS(ph)LEHDELR ddPTM_HeLa_A485_30min_R1 2 QGHDSLEHDELR 12 0 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 0 QGHDS(1)LEHDELR;QGHDS(1)LEHDELR ; 183.36 4.95E-13 1071130000 443850 608600 549880 438700 636250 601030 618000 749240 476570 500060 TRUE FALSE FALSE 542582.9012 679770.4759 753303.4944 462665.0702 572902.716 632499.0014 485959.2514 565487.7152 572213.2276 375404.2449 1.445329691 1.810769284 2.006646181 1.232444961 1.526095466 1.684847761 1.294495888 1.506343423 1.52425881 1 18.51808544 -11.78944612 0.141537054 7.01E-13 1.813592148 0.417974692 0.209688833 64.9735578 1.030905546 21.67539699 1.475964042 1.62E-12 11.78944612 1.813592148 QGHDS(ph)LEHDELR ddPTM_HeLa_A486_30min_R1 2 QGHDSLEHDELR 12 0 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 0 QGHDS(1)LEHDELR;QGHDS(1)LEHDELR ; 191.83 1.86E-13 880030000 732940 771230 625130 260970 820810 691600 779930 795520 714140 878440 TRUE FALSE FALSE 681564.6909 710114.926 867197.0776 607551.3487 717856.3561 606277.4237 584783.2647 614397.4621 776042.2302 658472.9063 1.035068694 1.078426947 1.316982171 0.922667194 1.090183589 0.920732528 0.888090093 0.933064149 1.178548461 1 19.32876455 -5.297295272 24.99603924 0.984663679 1.136986251 0.297796717 0.107282638 718.7955206 501088.8161 0.030484599 0.045218006 5.04E-06 5.297295272 0.152322572 QGLAET(ph)ASPVAVS(ph)LR ddPTM_HeLa_A486_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 QGLAET(0.599)AS(0.401)PVAVS(1)LR 110.77 0.00058753 30726000 145300 164680 92199 39837 105880 116670 119500 117730 124730 142010 TRUE FALSE FALSE 135115.2203 151630.157 127900.922 92742.54925 92599.54311 102276.4416 89599.83606 90925.44903 135541.6968 106449.7717 1.269286145 1.424429143 1.201514291 0.871232956 0.869889542 0.960795312 0.841709988 0.854162932 1.273292509 1 16.69981333 -5.082273038 3.888306903 0.940257619 1.343370813 0.627326336 0.124699138 0.135745207 3.815434294 0.034082552 0.064800026 8.27E-06 5.082273038 0.403113194 QGLAET(ph)ASPVAVSLR ddPTM_HeLa_A485_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 QGLAET(0.667)AS(0.333)PVAVSLR 170.16 1.66E-11 339640000 198970 247260 244970 215740 299030 207400 264610 274830 221980 272090 TRUE FALSE FALSE 243230.1901 276174.9061 335594.5971 227525.3299 269257.5232 218259.1433 208073.9118 207427.5116 266529.3499 204262.9704 1.190769867 1.352055664 1.642953671 1.113884369 1.318190579 1.068520363 1.018657035 1.015492486 1.304834397 1 17.64006817 -5.91184706 1.528364284 1.080424862 1.371069037 0.380695364 0.152584882 0.402252462 1.939707709 0.059591109 0.071419787 1.23E-06 5.91184706 0.290644175 QGLAET(ph)ASPVAVSLR ddPTM_HeLa_A486_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 QGLAET(0.676)AS(0.324)PVAVSLR 141.1 3.11E-06 287200000 215120 239680 221800 69270 293210 232230 234720 229560 237320 211790 TRUE FALSE FALSE 200041.1989 220686.8839 307686.9 161264.0607 256432.8677 203579.8237 175990.5734 177294.1993 257891.0887 158756.4055 1.260051198 1.39009751 1.938106995 1.015795616 1.615259976 1.282340849 1.108557307 1.116768793 1.624445249 1 17.27645528 -6.505383204 23.12686288 1.218355774 1.444976783 0.143400226 0.269915353 569.6251794 752975.0355 0.09415221 0.081090265 3.12E-07 6.505383204 0.226621009 QGLAETAS(ph)PVAVS(ph)LR ddPTM_HeLa_A485_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 QGLAET(0.323)AS(0.677)PVAVS(1)LR 133.24 1.23E-05 0 99511 126960 121590 112330 104780 96468 98690 96498 100860 119040 TRUE FALSE FALSE 121646.8786 141806.8676 166571.2008 118466.3035 94347.7353 101518.9153 77604.07528 72831.7142 121101.6769 89365.51877 1.361228361 1.586818602 1.863931448 1.32563773 1.055750994 1.135996486 0.868389468 0.814986756 1.355127554 1 16.44743066 -5.586781435 3.332966529 1.024695249 1.604337701 0.664426444 0.180031577 0.141491538 3.188359392 0.055801296 0.076244003 2.59E-06 5.586781435 0.579642451 QGLAETAS(ph)PVAVSLR ddPTM_HeLa_A485_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 QGLAET(0.38)AS(0.62)PVAVSLR 165.3 5.45E-12 327850000 202820 263740 264840 227230 327760 231770 280930 271540 237820 310610 TRUE FALSE FALSE 247936.6093 294582.0988 362815.3369 239642.9995 295127.0636 243905.1188 220907.0105 204944.3892 285548.2926 233180.6434 1.063281264 1.263321408 1.555941058 1.027713948 1.265658501 1.045992134 0.947364272 0.878908242 1.224579744 1 17.83108851 -6.334928395 3.934366866 1.001694602 1.243994332 0.320108044 0.156827956 0.277113736 8.309864356 0.057691509 0.051061227 4.62E-07 6.334928395 0.24229973 QGLAETAS(ph)PVAVSLR ddPTM_HeLa_A486_30min_R1 2 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 QGLAET(0.002)AS(0.998)PVAVSLR;QGLAET(0.259)AS(0.725)PVAVS(0.016)LR ; 229.93 4.38E-34 292510000 346174 427953 345788 118381 475126 312427 363414 377141 330837 304347 TRUE FALSE FALSE 321908.9902 394040.4457 479686.3741 275596.9506 415531.2667 273882.9333 272483.9734 291274.2272 359514.2175 228136.5302 1.411036584 1.727213285 2.102628516 1.208035164 1.821414862 1.200522043 1.194389926 1.276753999 1.575873084 1 17.79953795 -6.270502459 24.88594281 1.263360051 1.658270123 0.37905137 0.258566731 701.0142514 1924881.138 0.089415318 0.079970974 5.36E-07 6.270502459 0.394910072 QGLKS(ph)PQESLSDLGAIESLR ddPTM_HeLa_A486_30min_R1 1 QGLKSPQESLSDLGAIESLR 20 1 Q96JG6;F8WDT1;F2Z3F0;A0A3B3IRQ5;C9JA29;Q96JG6-2 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 0 QGLKS(1)PQESLSDLGAIESLR 120.57 2.77E-06 44243000 17826 20273 8971.1 8194.9 15421 21505 22609 22145 21502 20042 TRUE FALSE FALSE 16576.48945 18666.49365 12444.95017 19078.14135 13486.75438 18851.93175 16951.98907 17103.06692 23365.81067 15023.35275 1.103381498 1.242498526 0.828373691 1.269899048 0.897719345 1.254841849 1.128375893 1.138432094 1.555299344 1 13.87491919 -7.550242482 24.99563016 1.30072185 1.104835984 0.11815725 0.185425679 383.8875094 350658.0052 0.114655627 0.043337985 2.82E-08 7.550242482 -0.195885866 QGMS(ph)PTFSR ddPTM_HeLa_A485_30min_R1 1 QGMSPTFSR 9 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 QGMS(0.997)PT(0.003)FSR 152.96 5.51E-05 388900000 98127 150510 140780 124210 184690 146900 184460 182600 83321 189380 TRUE FALSE FALSE 119955.0126 168110.8352 192860.3803 130995.2778 166301.6151 154591.4568 145048.6141 137817.0637 100042.7604 142171.0513 0.843737255 1.182454752 1.356537626 0.92139206 1.169729095 1.087362409 1.020240146 0.969375006 0.70367884 1 17.11726821 -7.258111252 2.0550662 0.855293105 1.103170664 0.272103503 0.150245521 0.423149129 3.354410272 0.105159256 0.043328312 5.52E-08 7.258111252 0.247877559 QGMSMRES(ph)PVSAPLEGLICR ddPTM_HeLa_A485_30min_R1 4 QGMSMRESPVSAPLEGLICR 20 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 QGMS(0.08)MRES(0.896)PVS(0.024)APLEGLICR;QGMS(0.021)MRES(0.979)PVSAPLEGLICR;QGMS(0.002)MRES(0.998)PVSAPLEGLICR;QGMS(0.006)MRES(0.994)PVSAPLEGLICR ;;; 117.82 5.59E-06 392565000 140385 171398 182374 148062 225440 165003 208213 227718 156538 188608 TRUE FALSE FALSE 171613.1589 191441.5051 249841.7318 156150.2521 202994.402 173642.3019 163726.5916 171869.8035 187953.7407 141591.4967 1.212030122 1.352069225 1.764524973 1.102822244 1.433662379 1.226361088 1.15633068 1.213842692 1.327436641 1 17.1113751 -6.182752089 1.213883329 1.185225499 1.400253646 0.210502874 0.178321274 0.772411049 2.34695396 0.086351416 0.083473204 6.57E-07 6.182752089 0.215028147 QGMSMRES(ph)PVSAPLEGLICR ddPTM_HeLa_A486_30min_R1 2 QGMSMRESPVSAPLEGLICR 20 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 QGMS(0.001)MRES(0.998)PVSAPLEGLICR;QGMS(0.002)MRES(0.998)PVSAPLEGLICR ; 166.22 1.01E-13 302020000 135051 145004 113600 38058 198253 133352 132432 154562 110359 121101 TRUE FALSE FALSE 125584.6223 133513.3549 157588.9623 88600.94734 173386.2601 116900.3861 99296.11288 119371.6067 119925.007 90776.52136 1.38344828 1.470791708 1.736010148 0.976033737 1.910034197 1.287782174 1.093852368 1.315005299 1.321101593 1 16.47003158 -7.713935709 0.363448397 0.985795108 1.515050518 0.232437896 0.249688921 1.948612483 0.790121153 0.38631652 0.267043425 1.93E-08 7.713935709 0.52925541 QGMSPT(ph)FSR ddPTM_HeLa_A485_30min_R1 1 QGMSPTFSR 9 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 QGMS(0.204)PT(0.796)FSR 158.61 0.00010609 317290000 119920 147490 129890 126430 147070 155610 189400 194310 127970 161640 TRUE FALSE FALSE 146595.7903 164737.6725 177941.7162 133336.5508 132427.1944 163757.499 148933.1427 146655.1678 153652.4052 121346.1228 1.208079722 1.357584971 1.466398037 1.098811793 1.091317888 1.349507469 1.227341586 1.208569046 1.266232507 1 16.88876849 -13.99921367 0.177638571 3.62E-13 1.306403918 0.327186914 0.109428572 171.2534693 1.641184212 60.64415513 0.377251031 1.00E-14 13.99921367 1.306403918 QGMSPT(ph)FSR ddPTM_HeLa_A486_30min_R1 1 QGMSPTFSR 9 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 QGMS(0.436)PT(0.564)FSR 137.4 0.00080472 267700000 119330 123430 103470 59127 128100 119160 126170 137890 102900 130870 TRUE FALSE FALSE 110965.5832 113648.9573 143536.355 137650.6441 112032.5035 104459.2507 94600.93151 106495.4571 111819.4549 98099.30018 1.131155707 1.158509358 1.463174098 1.403176617 1.142031628 1.064831763 0.964338495 1.085588347 1.139859863 1 16.58195522 -5.965051334 5.158416882 1.05534969 1.291966941 0.54445578 0.102552169 0.16188412 10.83860239 0.035972947 0.040217378 1.08E-06 5.965051334 0.236617251 QGNFFAS(ph)PMLK ddPTM_HeLa_A485_30min_R1 2 QGNFFASPMLK 11 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 QGNFFAS(1)PMLK;QGNFFAS(1)PMLK ; 215.61 1.02E-17 915059000 701814 713183 539982 758538 950520 760620 1075800 1173900 591261 1020250 TRUE FALSE FALSE 857930.1031 796583.548 739743.8123 799975.0102 855882.8913 800444.8871 845946.5415 885999.1844 709921.6593 765920.4513 1.120129514 1.04003431 0.965823293 1.044462266 1.117456636 1.045075746 1.104483553 1.156777029 0.926886935 1 19.54683504 -4.255226166 22.74381363 1.051158681 1.120129628 0.097511256 0.066289214 531.5084587 1945409.208 0.016495513 0.141846246 5.56E-05 4.255226166 0.068970947 QGNFFAS(ph)PMLK ddPTM_HeLa_A486_30min_R1 4 QGNFFASPMLK 11 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 QGNFFAS(1)PMLK;QGNFFAS(1)PMLK;QGNFFAS(1)PMLK;QGNFFAS(1)PMLK ;;; 148.48 7.50E-07 1863023000 1770780 1660180 1090830 725852 1823410 1766860 2151460 2142440 1392400 2082790 TRUE FALSE FALSE 1646657.466 1528621.291 1513228.589 1689820.139 1594700.915 1548882.777 1613141.952 1654653.181 1513094.353 1561245.827 1.054707361 0.979103523 0.969244281 1.082353662 1.021428456 0.992081292 1.033240201 1.059828729 0.969158301 1 20.57426629 QGPAGS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 QGPAGSPSR 9 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 0 QGPAGS(0.572)PS(0.428)R;QGPAGS(0.883)PS(0.117)R ; 121.29 0.00040085 665490000 422262 284502 382098 145001 308260 506606 444964 329390 467119 502442 TRUE FALSE FALSE 392663.6144 261957.0254 530056.5785 337569.6559 269595.1564 444106.1025 333629.3009 254395.0875 507609.251 376627.2529 1.042578866 0.695533909 1.40737712 0.896296413 0.715814255 1.179166136 0.885834199 0.675455867 1.347776209 1 18.52277787 -7.776258629 24.99999047 1.173887887 0.942473037 0.143913154 0.230574621 539.0796719 909397.6348 0.211611548 0.055564451 1.67E-08 7.776258629 -0.231414851 QGPAGS(ph)PSRFNSVAGHFFFPLLQR ddPTM_HeLa_A485_30min_R1 2 QGPAGSPSRFNSVAGHFFFPLLQR 24 1 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 0 QGPAGS(0.744)PS(0.109)RFNS(0.146)VAGHFFFPLLQR;QGPAGS(0.594)PS(0.394)RFNS(0.012)VAGHFFFPLLQR ; 179.81 1.39E-20 261230000 66048 125792 107989 48827 162546 110472 150145 177335 83350 88536 TRUE FALSE FALSE 80740.14974 140502.2802 147938.6249 51494.29537 146362.3495 116256.1431 118065.2942 133843.3132 100077.5805 66465.60458 1.214765896 2.113909608 2.22579221 0.774751026 2.202076554 1.749117364 1.776336722 2.013722948 1.505704809 1 16.02032033 -8.033567516 8.482670924 1.000005732 1.768140753 0.222913583 0.432562754 0.805801841 201.7018312 0.401109408 0.103698279 9.26E-09 8.033567516 0.768135021 QGPAGS(ph)PSRFNSVAGHFFFPLLQR ddPTM_HeLa_A486_30min_R1 2 QGPAGSPSRFNSVAGHFFFPLLQR 24 1 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 0 QGPAGS(0.798)PS(0.202)RFNSVAGHFFFPLLQR;QGPAGS(0.826)PS(0.147)RFNS(0.026)VAGHFFFPLLQR ; 179.49 1.42E-20 191837000 125779 116726 115767 20140.4 194067 106146 149434 161932 102485 102829 TRUE FALSE FALSE 116962.5416 107476.2067 160595.0827 46887.86904 169725.3073 93050.78573 112044.0326 125063.6186 111368.4823 77079.9491 1.517418512 1.394347141 2.083487141 0.608301764 2.201938497 1.207198329 1.453608026 1.622518178 1.444843745 1 16.234068 -8.042060079 19.99927687 0.999999987 1.50883426 0.117651957 0.417338879 1173.773815 558123.9693 0.369012838 0.095278669 9.08E-09 8.042060079 0.508834273 QGPAGSPS(ph)R ddPTM_HeLa_A486_30min_R1 1 QGPAGSPSR 9 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 0 QGPAGS(0.083)PS(0.917)R 120.54 0.00043649 345450000 369040 244320 293050 122570 234170 389630 307030 269380 395760 402850 TRUE FALSE FALSE 343172.2017 224959.1934 406526.8082 285349.1543 204798.2151 341561.4121 230207.8466 208048.0545 430064.7955 301973.7379 1.136430619 0.744962774 1.346232328 0.944946923 0.678198762 1.131096414 0.762343932 0.688960755 1.424179462 1 18.20406356 -3.963970231 20.24423215 0.958703961 2.089570689 0.036875626 0.251822671 1538.154691 345697.8078 0.058460599 95675.19905 0.00010865 3.963970231 1.130866729 QGPGPGGPK(ac)GGK ddPTM_HeLa_A486_30min_R1 2 QGPGPGGPKGGK 12 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; QGPGPGGPK(1)GGK;QGPGPGGPK(1)GGK 121.6 0.0043678 27377000 9909.2 11065.4 8022.9 4026.3 10569.7 11543 12904.5 12037.8 8855.6 15039.5 FALSE TRUE FALSE 9214.616251 10188.5374 11129.58174 9373.429878 9243.949667 10118.94202 9675.65761 9297.055723 9623.210538 11273.51131 0.817368786 0.903759009 0.987232942 0.831456112 0.819970763 0.897585654 0.858264772 0.824681456 0.853612532 1 13.46064931 -1.097152887 17.68275814 0.875131666 0.004400343 0 0.064079733 0 0 0.014439418 0 0.079955274 1.097152887 -0.870731322 QGPPCS(ph)DS(ph)EEEVER ddPTM_HeLa_A485_30min_R1 3 QGPPCSDSEEEVER 14 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 0 QGPPCS(1)DS(1)EEEVER;QGPPCS(1)DS(1)EEEVER;QGPPCS(1)DS(1)EEEVER ;; 210.39 5.96E-22 2122460000 1025990 1296930 1389770 1270000 1820580 1203280 1516730 1524560 1292590 1610100 TRUE FALSE FALSE 1254217.936 1448594.682 1903903.756 1339376.884 1639316.663 1266281.88 1192668.245 1150659.27 1552000.957 1208731.702 1.037631374 1.198441871 1.575125194 1.108084517 1.356228732 1.047612037 0.986710486 0.951955896 1.283991273 1 20.20506262 -6.279323883 23.19761583 1.046842155 1.261565912 0.28205552 0.160006891 419.9399818 544692.4584 0.056304652 0.049790223 5.26E-07 6.279323883 0.214723757 QGPPCS(ph)DS(ph)EEEVER ddPTM_HeLa_A486_30min_R1 2 QGPPCSDSEEEVER 14 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 0 QGPPCS(1)DS(1)EEEVER;QGPPCS(1)DS(1)EEEVER ; 213.69 2.07E-22 1572080000 730440 1080990 885570 356400 1197960 939230 1081180 1070210 936750 947950 TRUE FALSE FALSE 679239.928 995328.4155 1228486.42 829717.2115 1047700.686 823357.352 810657.3284 826546.5455 1017948.244 710577.1499 0.955898917 1.40073237 1.728857198 1.16766661 1.474436219 1.158716337 1.140843508 1.16320451 1.432565407 1 19.43863177 -6.281277303 23.95345002 1.186877309 1.360001681 0.131162233 0.212098754 1026.753355 1239755.946 0.074789435 0.06606275 5.23E-07 6.281277303 0.173124371 QGPVSQSATQQPVTADKQQGHEPVS(ph)PR ddPTM_HeLa_A485_30min_R1 5 QGPVSQSATQQPVTADKQQGHEPVSPR 27 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 QGPVSQSATQQPVTADKQQGHEPVS(1)PR;QGPVSQSATQQPVT(0.002)ADKQQGHEPVS(0.998)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR ;;;; 220.78 2.03E-38 5277550000 876310 1312430 886670 797140 1643890 1446480 1990480 2567000 977430 1243350 TRUE FALSE FALSE 1071242.136 1465907.272 1214686.13 840685.7397 1480218.54 1522215.456 1565197.687 1937439.225 1173591.235 933405.7272 1.147670413 1.570493119 1.301348487 0.900664861 1.585825431 1.630818637 1.676867456 2.075666742 1.257321657 1 19.83214479 -5.950709256 24.99519139 1.605067267 1.257428169 0.171520132 0.308801094 166.5227852 84442.36236 0.093441937 0.105953176 1.12E-06 5.950709256 -0.347639098 QGPVSQSATQQPVTADKQQGHEPVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 QGPVSQSATQQPVTADKQQGHEPVSPR 27 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 QGPVSQSATQQPVT(0.001)ADKQQGHEPVS(0.999)PR;QGPVSQSATQQPVTADKQQGHEPVS(1)PR ; 278.57 2.90E-77 6181000000 1202250 908320 644510 397040 1245990 895890 1270180 1347370 676470 1319910 TRUE FALSE FALSE 1117978.483 836341.4152 894081.5326 924329.1853 1089706.316 785364.2005 952367.5294 1040603.264 735106.9643 989395.9448 1.129960648 0.845305077 0.903664036 0.934235874 1.101385468 0.793781503 0.962574725 1.051756144 0.742985625 1 19.91618846 -6.268483842 24.98396536 0.916726568 0.968158794 0.080033578 0.11700576 2141.220469 7594044.976 0.040107931 0.036112824 5.39E-07 6.268483842 0.051432226 QGQDVAPPPNPVPQRT(ph)SPTGPK ddPTM_HeLa_A485_30min_R1 2 QGQDVAPPPNPVPQRTSPTGPK 22 1 Q9UPY8-2 Q9UPY8-2 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 QGQDVAPPPNPVPQRT(0.6)S(0.394)PT(0.005)GPK;QGQDVAPPPNPVPQRT(0.648)S(0.348)PT(0.004)GPK ; 171.73 4.81E-14 760770000 448260 557180 368070 531000 653740 719480 1040650 1144800 472750 831380 TRUE FALSE FALSE 547973.8905 622337.3542 504234.4097 560007.1854 588651.3502 757150.8603 818306.6262 864036.005 567626.5887 624132.2664 0.877977185 0.997124148 0.807896718 0.897257225 0.943151607 1.213125648 1.311110914 1.384379644 0.90946522 1 19.25149227 -6.207715982 4.489133907 1.197537629 0.899749667 0.462930658 0.137511417 0.177968462 7.696181666 0.046316768 0.045474914 6.20E-07 6.207715982 -0.297787963 QGQDVAPPPNPVPQRT(ph)SPTGPK ddPTM_HeLa_A486_30min_R1 2 QGQDVAPPPNPVPQRTSPTGPK 22 1 Q9UPY8-2 Q9UPY8-2 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 QGQDVAPPPNPVPQRT(0.499)S(0.499)PT(0.001)GPK;QGQDVAPPPNPVPQRT(0.604)S(0.391)PT(0.005)GPK ; 187.26 1.44E-19 1117130000 879250 720780 478590 396370 976690 883110 1168930 1277470 661260 1328660 TRUE FALSE FALSE 817619.1155 663662.7678 663912.8651 922769.3914 854184.4329 774160.867 876451.3503 986617.968 718578.5492 995954.8879 0.820939909 0.666358262 0.666609375 0.926517258 0.857653738 0.777305154 0.880011094 0.990625158 0.721497086 1 19.92572087 -1 0.084099717 1.116614867 0.030894705 0.310675614 0.096603743 205.7435125 1.257213769 2.308944163 25.85907397 0.1 1 -1.085720162 QGQSQAASSSSVTS(ph)PIK ddPTM_HeLa_A485_30min_R1 1 QGQSQAASSSSVTSPIK 17 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 0 QGQSQAASSSSVT(0.247)S(0.753)PIK 112.82 0.00013204 521800000 318650 301630 214630 418900 368730 344860 481880 435190 268870 569020 TRUE FALSE FALSE 389532.5932 336903.0047 294030.5685 441783.4463 332017.9465 362916.3363 378922.4014 328458.9701 322829.7428 427173.786 0.911883186 0.788679024 0.688316039 1.034200742 0.777243261 0.849575391 0.887045071 0.768911813 0.755733974 1 18.70446359 -10.20580021 3.948252854 1.000115928 0.828786378 0.234490558 0.092652698 124054710.6 194945461.8 184881.3439 0.022641025 6.23E-11 10.20580021 -0.17132955 QGQSQAASSSSVTS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 QGQSQAASSSSVTSPIK 17 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 0 QGQSQAAS(0.001)S(0.001)S(0.001)S(0.001)VT(0.049)S(0.947)PIK;QGQSQAASSSSVT(0.036)S(0.964)PIK ; 209.73 1.90E-25 618520000 378050 447400 308600 220592 471560 401640 540520 484250 344340 609130 TRUE FALSE FALSE 351550.6473 411946.3946 428098.1846 513549.3241 412412.5477 352089.7404 405276.179 373996.8461 374187.6684 456599.8832 0.769931531 0.902204336 0.937578393 1.124725045 0.903225259 0.7711122 0.887595888 0.819090981 0.819508901 1 18.80057097 -6.006023711 24.95643798 0.848497117 0.941940669 0.105753908 0.098372037 516.6235608 2140400.995 0.031752057 0.034837227 9.86E-07 6.006023711 0.093443552 QGQTS(ph)PIKPK ddPTM_HeLa_A486_30min_R1 2 QGQTSPIKPK 10 1 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 QGQT(0.207)S(0.793)PIKPK;QGQT(0.143)S(0.857)PIKPK ; 73.082 0.0021624 1632500000 2788920 2144790 1040450 1224720 2177460 2893320 3428870 3039110 2047120 4147120 TRUE FALSE FALSE 2593431.11 1974829.029 1443340.104 2851210.054 1904342.663 2536371.596 2570930.459 2347170.996 2224566.01 3108654.159 0.834261702 0.635268167 0.46429742 0.917184707 0.612593928 0.815906648 0.827023634 0.755044105 0.715604212 1 21.56785869 -14 0.150075478 1.980716087 0.643082519 0.306400301 0.124118967 163.4662242 1.454948299 47.65856454 0.625370772 1.00E-14 14 -1.337633568 QGRPSPTS(ph)PVKPSSPASKPDGPAELPLTDR ddPTM_HeLa_A486_30min_R1 1 QGRPSPTSPVKPSSPASKPDGPAELPLTDR 30 3 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 QGRPS(0.211)PT(0.211)S(0.576)PVKPS(0.001)SPASKPDGPAELPLTDR 102.75 0.00024456 325130000 163820 135490 50770 58473 102310 149600 181810 161270 111970 221030 TRUE FALSE FALSE 152337.064 124753.279 70429.50367 136128.0991 89477.3258 131143.873 136319.215 124552.3415 121675.6498 165682.6493 0.919450918 0.752965259 0.425086779 0.821619521 0.540052481 0.791536552 0.822773028 0.751752474 0.734389812 1 17.338063 -6.488359253 24.53127268 0.806629209 0.685439254 0.159110895 0.145832055 1006.92785 715574.011 0.050866174 0.044833056 3.25E-07 6.488359253 -0.121189955 QGRPTLQEGPGLQQKPRPEAEPPS(ph)PPSGDLR ddPTM_HeLa_A485_30min_R1 3 QGRPTLQEGPGLQQKPRPEAEPPSPPSGDLR 31 3 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7;B0QYI1;Q8WUA7-2 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 0 QGRPTLQEGPGLQQKPRPEAEPPS(0.953)PPS(0.047)GDLR;QGRPTLQEGPGLQQKPRPEAEPPS(1)PPSGDLR;QGRPTLQEGPGLQQKPRPEAEPPS(0.998)PPS(0.002)GDLR ;; 157.86 2.45E-10 3724500000 1310680 1459320 1110830 1446300 1703690 1559400 2127540 2353380 1277260 1957130 TRUE FALSE FALSE 1602236.244 1629974.78 1521772.242 1525307.707 1534064.642 1641047.773 1672973.699 1776209.865 1533594.366 1469253.509 1.090510408 1.109389747 1.035745181 1.038151481 1.044111606 1.116926223 1.138655574 1.20891994 1.043791529 1 20.48665191 -6.275563693 22.86984342 1.117028473 1.063167318 0.069712007 0.057093031 471.3450493 763189.919 0.019790148 0.017568052 5.30E-07 6.275563693 -0.053861155 QGRPTLQEGPGLQQKPRPEAEPPS(ph)PPSGDLR ddPTM_HeLa_A486_30min_R1 2 QGRPTLQEGPGLQQKPRPEAEPPSPPSGDLR 31 3 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7;B0QYI1;Q8WUA7-2 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 0 QGRPTLQEGPGLQQKPRPEAEPPS(1)PPSGDLR;QGRPTLQEGPGLQQKPRPEAEPPS(1)PPSGDLR ; 179.1 9.07E-21 2874000000 2956080 2674190 1633520 1011860 3062220 2710640 3248610 3321450 2350020 3466940 TRUE FALSE FALSE 2748874.057 2462277.445 2266062.691 2355661.217 2678127.814 2376228.797 2435773.418 2565228.342 2553721.626 2598795.658 1.057749211 0.947468662 0.871966476 0.906443417 1.030526508 0.914357691 0.937270081 0.987083511 0.9826558 1 21.30941177 -7.275418263 21.14545267 0.988652308 0.948773422 0.094321026 0.052665062 269.7881648 408086.3465 0.029483527 0.014340427 5.30E-08 7.275418263 -0.039878886 QGRS(ph)S(ph)MGTGLSGGKR ddPTM_HeLa_A485_30min_R1 2 QGRSSMGTGLSGGKR 15 2 H0YHT0;Q16526 H0YHT0 CRY1 Cryptochrome-1 2 0 QGRS(0.936)S(0.527)MGT(0.329)GLS(0.208)GGKR;QGRS(0.962)S(0.527)MGT(0.317)GLS(0.194)GGKR ; 61.212 0.01338 387050000 9524.1 8243.9 8225.9 10622 20221.2 7789.1 12547.3 13228.6 7802.5 11757.3 TRUE FALSE FALSE 11642.70319 9207.952393 11269.00272 11202.25296 18207.90633 8196.925232 9866.466853 9984.265108 9368.390181 8826.421487 1.31907401 1.043226001 1.276735168 1.269172674 2.062886568 0.928680467 1.117833186 1.131179281 1.061402993 1 13.10761293 QGRS(ph)S(ph)MGTGLSGGKR ddPTM_HeLa_A486_30min_R1 1 QGRSSMGTGLSGGKR 15 2 H0YHT0;Q16526 H0YHT0 CRY1 Cryptochrome-1 2 0 QGRS(0.966)S(0.538)MGT(0.312)GLS(0.185)GGKR 62.287 0.012061 82423000 4292.2 4782.1 6174.6 3072.3 5538.3 5598.5 4880.8 7744.5 6262.8 7155.5 TRUE FALSE FALSE 3991.338945 4403.14898 8565.570482 7152.469665 4843.634771 4907.813991 3659.572216 5981.246411 6805.664547 5363.716226 0.744136859 0.820913858 1.59694699 1.333491439 0.903037105 0.915002544 0.682282966 1.115131032 1.26883382 1 12.3890172 -5.798499627 24.9994118 0.968263921 1.136024143 0.063235002 0.265727183 501.5921937 338352.1089 0.090497104 0.102616672 1.59E-06 5.798499627 0.167760222 QGS(ph)FSEDVISHK ddPTM_HeLa_A485_30min_R1 4 QGSFSEDVISHK 12 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 QGS(0.981)FS(0.019)EDVISHK;QGS(0.974)FS(0.026)EDVISHK;QGS(0.998)FS(0.002)EDVISHK;QGS(0.998)FS(0.002)EDVISHK ;;; 195.66 4.67E-14 2375280000 1387270 1037570 986240 2275630 1685260 1186220 1856780 1328970 1241200 3039270 TRUE FALSE FALSE 1695863.425 1158904.786 1351091.217 2399941.905 1517469.597 1248328.645 1460063.785 1003038.024 1490297.455 2281635.923 0.743266447 0.50792713 0.592158987 1.051851385 0.66507964 0.54712 0.639919704 0.439613531 0.653170578 1 21.12163717 -9.999927084 5.025048589 1.000003339 0.645999782 0.308109994 0.157785976 221929898.6 32.50156177 8573.57537 0.040103718 1.00E-10 9.999927084 -0.354003557 QGS(ph)FSEDVISHK ddPTM_HeLa_A486_30min_R1 3 QGSFSEDVISHK 12 0 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 QGS(0.992)FS(0.008)EDVISHK;QGS(0.996)FS(0.004)EDVISHK;QGS(0.998)FS(0.002)EDVISHK ;; 241.64 5.82E-28 2111090000 1598580 1582790 847560 735260 1513330 1849320 2208930 2041750 1287400 2378110 TRUE FALSE FALSE 1486527.797 1457363.956 1175757.93 1711722.438 1323514.04 1621169.701 1656232.35 1576888.096 1398992.869 1782615.777 0.833902525 0.817542386 0.659568902 0.960230724 0.742456146 0.909433049 0.929102262 0.884592247 0.78479776 1 20.76556435 -6.011012837 1.178730327 0.894897203 0.792030275 0.201045866 0.088928897 0.81209769 2.37060368 0.039979553 0.045483168 9.75E-07 6.011012837 -0.102866928 QGS(ph)FTIEKPSPNIPIELIPHINK ddPTM_HeLa_A485_30min_R1 1 QGSFTIEKPSPNIPIELIPHINK 23 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 QGS(0.808)FT(0.192)IEKPSPNIPIELIPHINK 194.21 4.20E-27 0 188540 140950 82225 276040 182540 184700 310520 301560 121770 338650 TRUE FALSE FALSE 230480.0725 157432.8764 112643.4492 291119.3662 164365.6767 194370.6064 244174.8653 227601.9372 146208.1221 254230.7874 0.906578133 0.619251815 0.443075563 1.145098787 0.646521526 0.764543934 0.960445695 0.895257178 0.575099985 1 17.95577923 -5.242923337 24.99991779 0.842819601 0.652596883 0.18617594 0.189345034 1480.125552 1998427.278 0.050408899 0.087112167 5.72E-06 5.242923337 -0.190222717 QGS(ph)FTIEKPSPNIPIELIPHINK ddPTM_HeLa_A486_30min_R1 2 QGSFTIEKPSPNIPIELIPHINK 23 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 QGS(0.988)FT(0.012)IEKPSPNIPIELIPHINK;QGS(0.938)FT(0.062)IEKPSPNIPIELIPHINK ; 214.47 3.82E-30 14704700000 2835610 2490580 1025000 1669900 2222440 2996810 4192600 3623740 1896680 4182500 TRUE FALSE FALSE 2636848.382 2293217.37 1421907.45 3887611.592 1943680.852 2627094.052 3143567.135 2798693.508 2061085.75 3135174.776 0.841053074 0.731448016 0.453533711 1.239998363 0.619959329 0.837941818 1.002676839 0.892675435 0.65740697 1 21.58011444 -5.233194319 24.99940917 0.879384702 0.68095533 0.214934385 0.189251827 1235.924612 1093902.74 0.049973834 0.086534573 5.85E-06 5.233194319 -0.198429372 QGS(ph)PDQVS(ph)PVSEMTSTSLYQDK ddPTM_HeLa_A485_30min_R1 1 QGSPDQVSPVSEMTSTSLYQDK 22 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QGS(1)PDQVS(1)PVSEMTSTSLYQDK 177.14 7.44E-15 93928000 122820 102110 64699 167090 107600 99754 165130 125040 82640 226330 TRUE FALSE FALSE 150140.8853 114050.8763 88633.85245 176217.7036 96886.96619 104976.9652 129848.6265 94373.74394 99225.08998 169910.0963 0.883648992 0.671242491 0.521651476 1.037123205 0.570224891 0.617838301 0.764219604 0.555433409 0.583985838 1 17.37441206 -9.991712249 4.511251961 1.000007798 0.686877588 0.264482166 0.155291806 203704987.5 463299544.5 28129.28582 0.037974491 1.02E-10 9.991712249 -0.313130209 QGS(ph)PDQVS(ph)PVSEMTSTSLYQDK ddPTM_HeLa_A486_30min_R1 1 QGSPDQVSPVSEMTSTSLYQDK 22 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QGS(1)PDQVS(0.998)PVS(0.003)EMTSTSLYQDK 154.1 7.14E-10 144560000 166420 144950 58946 75452 103630 180730 179350 169510 123890 250900 TRUE FALSE FALSE 154754.8174 133463.6341 81771.46983 175656.0691 90631.75909 158433.3701 134474.733 130916.2734 134628.885 188073.0069 0.822844383 0.709637371 0.434785784 0.933978097 0.481896688 0.842403558 0.715013469 0.696092839 0.715833107 1 17.52093328 -13.99999474 0.334540278 4.111047439 0.691218738 0.27222874 0.144317509 479.2257629 4.10986924 1061.774749 0.113350245 1.00E-14 13.99999474 -3.4198287 QGS(ph)PDQVS(ph)PVSEMTSTSLYQDKQEGK ddPTM_HeLa_A485_30min_R1 2 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QGS(1)PDQVS(0.961)PVS(0.039)EMTSTSLYQDKQEGK;QGS(1)PDQVS(0.997)PVS(0.003)EMTSTSLYQDKQEGK ; 189.31 2.30E-20 888230000 990630 764220 539370 1660590 1442060 1304220 2523590 2295960 943720 2632500 TRUE FALSE FALSE 1210992.226 853588.8812 738905.4081 1751303.827 1298483.443 1372506.942 1984404.381 1732872.21 1133115.948 1976266.198 0.612767767 0.431919992 0.373889615 0.886167981 0.657038735 0.694494975 1.004117959 0.876841496 0.573362004 1 20.91434586 -5.262809189 24.99999991 0.804523447 0.468765204 0.537993605 0.14433784 95.87473557 1749793.892 0.040415395 0.063849673 5.46E-06 5.262809189 -0.335758242 QGS(ph)PDQVS(ph)PVSEMTSTSLYQDKQEGK ddPTM_HeLa_A486_30min_R1 2 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QGS(1)PDQVS(0.913)PVS(0.086)EMTSTSLYQDKQEGK;QGS(1)PDQVS(0.956)PVS(0.041)EMT(0.002)STSLYQDKQEGK ; 155.25 2.14E-09 964370000 965100 722800 369180 826470 934560 1151560 2079550 1875530 626250 1864120 TRUE FALSE FALSE 897451.4738 665522.6956 512136.383 1924063.927 817338.7704 1009492.235 1559224.595 1448512.762 680533.8542 1397332.219 0.642260632 0.476280935 0.366510108 1.376955245 0.584928022 0.722442539 1.115858186 1.036627326 0.487023662 1 20.41424363 -5.211411174 24.99990834 0.892974341 0.493143452 0.352001543 0.253639861 420.2765707 210018.2603 0.067670565 0.117208649 6.15E-06 5.211411174 -0.399830889 QGS(ph)PDQVSPVSEMTSTSLYQDKQEGK ddPTM_HeLa_A486_30min_R1 1 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGS(1)PDQVSPVSEMTSTSLYQDKQEGK 128.35 3.70E-06 95638000 41768 26595 11659 22069 31826 45675 71451 64360 33033 78359 TRUE FALSE FALSE 38840.27889 24487.51534 16173.67704 51377.74731 27834.08631 40040.08289 53573.20407 49706.63297 35896.32704 58737.39637 0.661252989 0.416898209 0.275355702 0.874702498 0.473873342 0.681679566 0.912079993 0.846251895 0.611132417 1 15.8419917 -6.165997725 0.832423299 0.843810124 0.479071779 0.381632707 0.176211351 0.670720377 1.01808696 0.111334201 0.11631108 6.82E-07 6.165997725 -0.364738345 QGS(ph)PGSVSK ddPTM_HeLa_A485_30min_R1 7 QGSPGSVSK 9 0 O00425 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 1 0 QGS(0.999)PGS(0.001)VSK;QGS(0.989)PGS(0.011)VSK;QGS(0.946)PGS(0.054)VSK;QGS(0.989)PGS(0.011)VSK;QGS(0.918)PGS(0.081)VSK;QGS(0.998)PGS(0.002)VSK;QGS(0.984)PGS(0.016)VSK ;;;;;; 155.24 4.17E-05 29689900000 31355330 27886210 12978130 50234100 23437860 29258660 46162000 52741600 25526110 63058400 TRUE FALSE FALSE 38330214.98 31147259.68 17779280.35 52978261.68 21104304.36 30790598.2 36299111.59 39806639.9 30648966.14 47339101.38 0.809694605 0.657960518 0.375572832 1.119122673 0.445811258 0.650426335 0.766789198 0.84088288 0.647434473 1 25.49652898 -10.53897993 0.303229438 1.238026185 0.669031527 0.171511482 0.197123312 40.08489151 2.329734614 7.43353824 0.204223104 2.89E-11 10.53897993 -0.568994658 QGS(ph)PGSVSK ddPTM_HeLa_A486_30min_R1 7 QGSPGSVSK 9 0 O00425 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 1 0 QGS(0.989)PGS(0.011)VSK;QGS(0.995)PGS(0.005)VSK;QGS(0.995)PGS(0.005)VSK;QGS(1)PGSVSK;QGS(0.957)PGS(0.043)VSK;QGS(0.826)PGS(0.174)VSK;QGS(1)PGSVSK ;;;;;; 166.71 9.00E-06 23258800000 37890090 20456910 16145800 16352880 19704110 46002200 39944200 31663510 31233560 54399200 TRUE FALSE FALSE 35234190.36 18835829.95 22397886.16 38070331.07 17232636.79 40326916.28 29949738.67 24454419.98 33940910.13 40777286.24 0.86406413 0.461919654 0.549273584 0.933616103 0.422603816 0.988955372 0.73447111 0.599706901 0.832348429 1 25.28126243 -14 0.147650391 2.085842613 0.603178372 0.200340951 0.184379224 213.5193187 1.884191073 67.6064214 0.947924318 1.00E-14 14 -1.482664241 QGS(ph)PVAAGAPAK ddPTM_HeLa_A485_30min_R1 8 QGSPVAAGAPAK 12 0 Q9NZI8 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 0 QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK ;;;;;;; 162.64 2.82E-10 23635310000 10916310 8973360 6253210 15765080 12310550 10753860 18020200 16373180 8090170 20356990 TRUE FALSE FALSE 13344605.5 10022716.39 8566532.597 16626286.4 11084868.42 11316915.48 14170037.06 12357631.93 9713792.912 15282367.04 0.873202788 0.655835341 0.560550115 1.087939215 0.725337141 0.740521115 0.927214811 0.808620281 0.635620967 1 23.86536468 -11.23130263 2.427521834 1.798356408 0.780898334 0.169146881 0.146624761 8203481.202 2499735.9 35719612.95 0.037162021 5.87E-12 11.23130263 -1.017458074 QGS(ph)PVAAGAPAK ddPTM_HeLa_A486_30min_R1 6 QGSPVAAGAPAK 12 0 Q9NZI8 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 0 QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK ;;;;; 156.72 4.28E-08 25356810000 10332010 9708150 4489020 5700910 8777650 11160650 14953500 13221120 7354620 16166200 TRUE FALSE FALSE 9607789.454 8938840.838 6227288.764 13272006.59 7676675.289 9783762.476 11211976.14 10210959.59 7992124.383 12118078.3 0.792847613 0.73764508 0.513884183 1.095223703 0.633489494 0.807369142 0.92522724 0.842622018 0.659520775 1 23.5306576 -14 0.145414607 1.715222577 0.713772254 0.147723302 0.153916683 267.581048 2.341836152 56.14829283 0.836952471 1.00E-14 14 -1.001450323 QGS(ph)SLNLFEDVQITEPEAEPESK ddPTM_HeLa_A485_30min_R1 2 QGSSLNLFEDVQITEPEAEPESK 23 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 QGS(0.5)S(0.5)LNLFEDVQITEPEAEPESK;QGS(0.5)S(0.5)LNLFEDVQITEPEAEPESK ; 116.24 7.74E-05 49750000 121369 77074 56457 194506 98560 95311 184327 170359 60694 262900 TRUE FALSE FALSE 148367.1153 86087.13385 77342.79367 205131.3703 88747.02033 100301.3366 144944.0306 128578.1881 72874.72908 197363.8683 0.751744058 0.436184873 0.391879194 1.039356251 0.449661942 0.508205162 0.734400029 0.651477848 0.369240478 1 17.59049837 -10.14830705 4.570060755 1.000047925 0.594341612 0.276667944 0.197666707 263016146.1 13.38657926 143875.8591 0.046833268 7.11E-11 10.14830705 -0.405706313 QGS(ph)SLNLFEDVQITEPEAEPESK ddPTM_HeLa_A486_30min_R1 3 QGSSLNLFEDVQITEPEAEPESK 23 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 QGS(0.5)S(0.5)LNLFEDVQITEPEAEPESK;QGS(0.5)S(0.5)LNLFEDVQITEPEAEPESK;QGS(0.5)S(0.5)LNLFEDVQITEPEAEPESK ;; 89.946 0.0015596 78362000 175300 163606 75731 148913 130503 213004 296073 259946 147621 322088 TRUE FALSE FALSE 163012.3753 150641.2647 105056.0713 346676.9896 114134.0968 186725.7321 221992.4039 200761.9704 160416.9071 241435.0684 0.675181018 0.623941111 0.435131781 1.435901553 0.472732058 0.77339938 0.919470421 0.83153608 0.664430848 1 17.88127572 QGS(ph)YSPALPLQPLGGHK ddPTM_HeLa_A486_30min_R1 1 QGSYSPALPLQPLGGHK 17 0 H3BMJ2;Q6ZRI6-2;Q6ZRI6 H3BMJ2 C15orf39 Uncharacterized protein C15orf39 1 0 QGS(0.63)Y(0.05)S(0.32)PALPLQPLGGHK 78.708 0.00095696 0 230010 211120 132180 74540 203760 183370 222060 225390 155570 225780 TRUE FALSE FALSE 213887.4868 194390.0823 183363.6359 173532.887 178202.5208 160747.6738 166498.2393 174073.6172 169054.9329 169243.2184 1.263787635 1.148584174 1.083432693 1.025346177 1.052937438 0.949802747 0.983780862 1.028541166 0.998887485 1 17.3687385 -4.055137881 0.73500282 0.995690797 1.505072037 0.925056456 0.024027238 0.918192351 0.308731936 0.010074956 0.414069651 8.81E-05 4.055137881 0.50938124 QGSFT(ph)IEKPSPNIPIELIPHINK ddPTM_HeLa_A485_30min_R1 1 QGSFTIEKPSPNIPIELIPHINK 23 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 QGS(0.112)FT(0.888)IEKPSPNIPIELIPHINK 233.42 2.30E-39 5596000000 2065500 1340600 948320 2962600 2026500 1851500 3382600 3067100 1365500 3771900 TRUE FALSE FALSE 2524963.349 1497371.508 1299143.031 3124439.336 1824734.545 1948441.677 2659879.877 2314888.916 1639543.325 2831634.747 0.891698109 0.528801079 0.458796119 1.103404788 0.644410282 0.688097813 0.939344271 0.817509715 0.579009467 1 21.43320375 -14 0.164151107 1.931800958 0.676360133 0.127002637 0.192290331 281.4218741 2.614454079 86.34926085 0.772601193 1.00E-14 14 -1.255440825 QGSGRES(ph)PSLASR ddPTM_HeLa_A485_30min_R1 9 QGSGRESPSLASR 13 1 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 QGSGRES(0.999)PS(0.001)LASR;QGSGRES(0.998)PS(0.002)LASR;QGSGRES(0.982)PS(0.018)LASR;QGSGRES(0.9)PS(0.098)LAS(0.001)R;QGSGRES(1)PSLASR;QGSGRES(0.999)PS(0.001)LASR;QGS(0.001)GRES(0.997)PS(0.002)LASR;QGS(0.257)GRES(0.742)PS(0.001)LASR;QGS(0.492)GRES(0.498)PS(0.01)LASR ;;;;;;;; 205.98 5.84E-22 36173896000 5581577 7565624 7187032 5752663 9182198 7017557 8981333 10081348 6288425 7781254 TRUE FALSE FALSE 6823179.547 8450357.915 9845814.214 6066916.413 8267986.126 7384985.433 7062397.834 7608881.596 7550454.217 5841530.581 1.168046534 1.446599962 1.68548535 1.038583352 1.415380098 1.264220966 1.208997836 1.302549305 1.292547238 1 22.477915 -13.57089713 0.147391579 1.21E-10 1.42701637 0.25942949 0.164550838 160.3309104 1.589210454 47.47536224 0.893336708 2.69E-14 13.57089713 1.42701637 QGSGRES(ph)PSLASR ddPTM_HeLa_A486_30min_R1 8 QGSGRESPSLASR 13 1 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 QGS(0.325)GRES(0.662)PS(0.013)LASR;QGSGRES(0.996)PS(0.004)LASR;QGS(0.002)GRES(0.903)PS(0.095)LASR;QGSGRES(0.995)PS(0.005)LASR;QGSGRES(0.999)PS(0.001)LASR;QGS(0.103)GRES(0.866)PS(0.029)LAS(0.002)R;QGS(0.138)GRES(0.856)PS(0.005)LASR;QGSGRES(0.987)PS(0.013)LASR ;;;;;;; 186.17 1.46E-17 28349145000 7104351 7204947 6054349 2499536 8827555 6709743 7713638 7898902 6077738 7816808 TRUE FALSE FALSE 6606372.682 6634000.76 8398755.074 5819046.128 7720320.738 5881963.128 5783604.186 6100494.446 6604561.223 5859428.398 1.127477329 1.132192478 1.43337447 0.993108155 1.317589398 1.003845892 0.987059452 1.041141564 1.127168177 1 22.4823285 -6.283008599 24.83291478 1.031615378 1.198327818 0.347348672 0.115739382 867.8844912 999202.9518 0.039394222 0.034773938 5.21E-07 6.283008599 0.16671244 QGSGS(ph)SQPMEVQEGYGFGSGDDPYSSAEPHVSGVKR ddPTM_HeLa_A485_30min_R1 1 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVKR 36 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 QGS(0.287)GS(0.356)S(0.356)QPMEVQEGYGFGSGDDPYSSAEPHVSGVKR 101.58 7.49E-05 268670000 13321 32825 30787 9082.7 43973 19621 34135 40384 25860 14016 TRUE FALSE FALSE 16284.21049 36663.59821 42176.39245 9578.864902 39594.89372 20648.32522 26841.77839 30479.76068 31049.8648 10522.06915 1.547624357 3.484447565 4.008374386 0.910359433 3.763033028 1.962382582 2.5509981 2.896745902 2.950927652 1 13.36113082 -10.1103131 4.764486908 0.999904773 2.70003 0.225440566 0.930375832 0.000920607 0.000171905 0.855633386 0.207509856 7.76E-11 10.1103131 1.700125228 QGSIT(ph)SPQANEQS(ph)VTPQRR ddPTM_HeLa_A485_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.121)IT(0.74)S(0.139)PQANEQS(0.697)VT(0.303)PQRR 85.573 0.00067216 1487500000 466390 490560 525380 539310 636270 433770 522890 455570 479910 684310 TRUE FALSE FALSE 570136.8465 547926.7247 719739.9249 568771.1397 572920.7247 456481.5265 411170.2799 343840.7432 576223.535 513724.1108 1.109811345 1.066577786 1.401024226 1.107152901 1.115230359 0.888573296 0.800371778 0.669310114 1.121659511 1 18.97063426 -6.189701071 2.731299482 0.865133021 1.176609901 0.465137981 0.140804191 0.23371033 3.423292684 0.051211885 0.049793229 6.46E-07 6.189701071 0.311476879 QGSIT(ph)SPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.003)IT(0.541)S(0.457)PQANEQS(0.069)VT(0.931)PQRR 131.2 5.06E-06 1954700000 853780 937450 968470 1030600 1173200 883750 969560 879100 935350 1357200 TRUE FALSE FALSE 1043700.415 1047076.623 1326747.354 1086899.068 1056392.089 930021.7835 762405.5854 663499.3466 1123066.165 1018875.017 1.024365499 1.027679161 1.302168894 1.066763882 1.036822054 0.912792803 0.748281754 0.651207788 1.10226097 1 19.95854566 -6.201368194 2.302964427 0.845924562 1.110937154 0.363203317 0.13820073 0.303045416 3.156189684 0.052834826 0.050740731 6.29E-07 6.201368194 0.265012593 QGSIT(ph)SPQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.078)IT(0.495)S(0.427)PQANEQS(0.043)VT(0.957)PQRR 99.614 0.00036796 1626700000 130290 155070 109500 55143 138440 148270 137880 145350 120570 156310 TRUE FALSE FALSE 121157.3438 142781.6884 151901.3325 128375.6908 121075.5643 129977.9549 103380.9657 112256.978 131021.1047 117168.9586 1.034039606 1.218596548 1.296429825 1.095645914 1.033341644 1.109320732 0.882323842 0.958077799 1.118223685 1 16.83823088 -5.594966599 3.214020132 1.011878569 1.188148937 0.410481671 0.088532168 0.238204906 4.965555898 0.028051174 0.0382997 2.54E-06 5.594966599 0.176270368 QGSIT(ph)SPQANEQSVTPQRR ddPTM_HeLa_A485_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGS(0.026)IT(0.572)S(0.402)PQANEQSVTPQRR 77.575 0.00041488 0 56634 50904 50341 50050 72295 59481 86816 89920 49682 66135 TRUE FALSE FALSE 69232.03792 56856.77999 68964.23076 52784.10477 65097.05596 62595.33318 68267.05238 67866.97901 59652.72169 49648.76162 1.394436349 1.145180225 1.389042315 1.06315048 1.311151655 1.260763232 1.375000104 1.36694203 1.201494654 1 15.59947011 -8.019566435 20.3053865 0.999999994 1.282178965 0.414104431 0.103856738 107.6864186 111754.8895 0.096212194 0.024841878 9.56E-09 8.019566435 0.282178971 QGSIT(ph)SPQANEQSVTPQRR ddPTM_HeLa_A486_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSIT(0.592)S(0.408)PQANEQSVTPQRR 95.195 6.17E-05 0 62044 49433 58126 26442 61538 75835 62859 77428 55171 52335 TRUE FALSE FALSE 57695.036 45515.74905 80633.94387 61558.3123 53819.33022 66479.24873 47131.01335 59799.33464 59953.2667 39229.97536 1.470687541 1.160228846 2.055416633 1.569165205 1.371893042 1.694603377 1.201403083 1.524327612 1.528251449 1 15.25966881 -6.75924716 24.99892068 1.357189518 1.551031245 0.162144464 0.259936484 137.5274568 1568318.949 0.103394489 0.076102939 1.74E-07 6.75924716 0.193841727 QGSITS(ph)PQANEQS(ph)VTPQRR ddPTM_HeLa_A486_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.005)IT(0.426)S(0.569)PQANEQS(0.873)VT(0.127)PQRR 141.6 1.33E-08 488030000 275280 317550 263390 108930 309120 303150 326230 321270 262220 327020 TRUE FALSE FALSE 255984.2935 292386.1815 365381.6618 253594.545 270347.2872 265750.4352 244603.8035 248123.8343 284949.4407 245132.0635 1.044270953 1.192770042 1.490550264 1.034522132 1.102863833 1.08411128 0.997844998 1.012204731 1.162432351 1 17.90319968 QGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 2 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGSIT(0.395)S(0.605)PQANEQS(0.114)VT(0.886)PQRR;QGS(0.002)IT(0.419)S(0.579)PQANEQS(0.002)VT(0.998)PQRR ; 212.75 2.36E-26 1990710000 750280 737330 780990 877120 1008850 685130 873560 711700 785070 1123830 TRUE FALSE FALSE 917177.1976 823554.3296 1069910.701 925034.8446 908405.3517 721002.3474 686916.7697 537154.4591 942626.3479 843679.8636 1.087115193 0.976145532 1.268147726 1.096428734 1.076718067 0.854592338 0.814191258 0.636680431 1.117279656 1 19.68633614 -6.227444808 4.424285704 0.856259083 1.106047968 0.383360642 0.135134038 0.201687261 9.4359719 0.045719963 0.044244413 5.92E-07 6.227444808 0.249788885 QGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 3 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.004)IT(0.213)S(0.784)PQANEQS(0.004)VT(0.996)PQRR;QGS(0.049)IT(0.435)S(0.516)PQANEQS(0.117)VT(0.883)PQRR;QGS(0.096)IT(0.379)S(0.526)PQANEQS(0.06)VT(0.94)PQRR ;; 137.31 1.11E-06 6806300000 1825630 2350370 1850130 783393 2338450 2303450 2355340 2336400 2150810 2493930 TRUE FALSE FALSE 1697662.765 2164118.121 2566549.884 1823778.494 2045139.796 2019273.759 1766009.02 1804452.723 2337243.943 1869433.695 0.908116062 1.157632992 1.372902334 0.975578058 1.093988945 1.080152649 0.944675933 0.965240291 1.25024169 1 20.83416987 QGSITS(ph)PQANEQSVTPQRR ddPTM_HeLa_A485_30min_R1 1 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSIT(0.021)S(0.979)PQANEQSVTPQRR 97.623 0.00019563 395610000 57208 72112 60739 50127 76283 71666 76889 92634 70190 78528 TRUE FALSE FALSE 69933.72223 80544.87111 83208.88366 52865.31108 68687.99667 75418.32094 60461.03702 69915.36626 84276.48918 58952.4148 1.18627409 1.366269242 1.411458444 0.896745473 1.165143055 1.279308425 1.025590508 1.185962721 1.429568059 1 15.84726329 -5.196262203 24.99986835 1.150119533 1.325827461 0.230705105 0.150657617 314.0630373 120463.3806 0.040798033 0.070664262 6.36E-06 5.196262203 0.175707928 QGSITSPQANEQSVT(ph)PQR ddPTM_HeLa_A485_30min_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSITSPQANEQS(0.001)VT(0.999)PQR 164.98 3.57E-12 0 84911 85642 84063 100900 106250 95709 135790 115370 93673 140840 TRUE FALSE FALSE 103799.159 95657.08691 115161.4019 106411.9115 95671.37693 100720.1752 106777.3572 87075.32661 112472.3119 105731.18 0.981727046 0.904719752 1.089190548 1.006438323 0.904854906 0.952606178 1.00989469 0.823553909 1.063757275 1 16.69004136 -5.71722252 24.99217692 0.952502592 0.995724133 0.051145644 0.073589422 386.4613245 218433.0225 0.021107797 0.027249908 1.92E-06 5.71722252 0.043221542 QGSITSPQANEQSVT(ph)PQR ddPTM_HeLa_A486_30min_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSITSPQANEQS(0.006)VT(0.994)PQR 197.88 1.27E-19 0 175750 180230 134810 42887 159180 196530 189320 193720 166260 188020 TRUE FALSE FALSE 163430.8326 165947.9184 187012.0423 99843.10339 139214.1601 172284.1268 141950.1336 149614.1849 180671.5507 140938.5682 1.159589136 1.17744859 1.326904656 0.708415763 0.987764825 1.222405825 1.00717735 1.061556015 1.281917029 1 17.10470694 QGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 7 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQS(0.001)VT(0.999)PQRR;QGSITSPQANEQS(0.411)VT(0.589)PQRR;QGSITSPQANEQS(0.229)VT(0.771)PQRR;QGSITSPQANEQSVT(1)PQRR ;;;;;; 282.38 8.70E-70 14539780000 925534 901516 991122 1158061 1321204 799526 1139427 944868 948416 1435197 TRUE FALSE FALSE 1131415.845 1006940.454 1357779.272 1221322.94 1189660.291 841387.9451 895979.1132 713137.6415 1138754.392 1077428.801 1.050107297 0.934577258 1.260203246 1.13355327 1.104166039 0.780922085 0.83159009 0.661888415 1.056918463 1 20.0391611 -6.253515135 24.64687542 0.842964728 1.098675299 0.442072232 0.12799551 429.2935319 1335237.54 0.042250525 0.041517827 5.58E-07 6.253515135 0.255710571 QGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 6 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQS(0.009)VT(0.991)PQRR;QGSITSPQANEQSVT(1)PQRR;QGSITSPQANEQSVT(1)PQRR ;;;;; 292.26 5.78E-79 11643330000 561164 615998 474673 240291 653831 630135 776596 715933 537807 702296 TRUE FALSE FALSE 521829.3015 567184.0751 658479.0978 559409.5916 571821.4192 552395.3504 582283.4668 552930.6846 584424.5438 526436.5104 0.99124831 1.077402619 1.250823385 1.062634488 1.086211552 1.049310486 1.106084884 1.050327387 1.110151998 1 19.00590002 QGSNPHESDPLQGSAALS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QGSNPHESDPLQGSAALSPR 20 0 G3V471;P56179;P56179-2;P56179-3 G3V471 DLX6 Homeobox protein DLX-6 1 0 QGSNPHESDPLQGS(0.109)AALS(0.891)PR 85.595 0.00016895 0 99742 113530 94957 13574 166330 87087 94907 116000 108870 64749 TRUE FALSE FALSE 92750.60087 104533.4693 131726.8934 31600.95799 145467.3404 76343.09138 71160.26478 89589.33226 118306.9393 48535.42895 1.910987558 2.153755959 2.714035835 0.651090526 2.997137216 1.572935339 1.46615094 1.845854342 2.437537729 1 15.56675062 -10.89755045 2.647766313 0.486169909 1.960276956 0.173989728 0.63499046 11942153.43 8685896.683 38425596.15 0.151424625 1.27E-11 10.89755045 1.474107047 QGSPDQVS(ph)PVSEMTSTSLYQDKQEGK ddPTM_HeLa_A485_30min_R1 3 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGSPDQVS(0.761)PVS(0.232)EMT(0.006)S(0.001)TSLYQDKQEGK;QGSPDQVS(1)PVSEMTSTSLYQDKQEGK;QGS(0.002)PDQVS(0.504)PVS(0.432)EMT(0.034)S(0.009)T(0.009)S(0.005)LY(0.005)QDKQEGK ;; 217.29 2.48E-38 1543850000 267414.7 261061 177531 327076 381462 352453 580913 700850 269650 486804 TRUE FALSE FALSE 326900.1774 291589.813 243207.1046 344943.3337 343482.3039 370906.8941 456796.1919 528965.4386 323766.2816 365452.7218 0.894507437 0.797886555 0.665495398 0.943879504 0.939881641 1.014924427 1.249946066 1.44742509 0.885932057 1 18.47932525 -6.142423644 1.454558296 1.174689642 0.802921521 0.449287886 0.156364525 0.336065113 1.435543118 0.067768286 0.067466553 7.20E-07 6.142423644 -0.371768122 QGSPDQVS(ph)PVSEMTSTSLYQDKQEGK ddPTM_HeLa_A486_30min_R1 3 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGSPDQVS(0.981)PVS(0.018)EMTSTSLYQDKQEGK;QGSPDQVS(0.642)PVS(0.353)EMT(0.005)STSLYQDKQEGK;QGS(0.378)PDQVS(0.477)PVS(0.13)EMT(0.011)S(0.003)T(0.001)S(0.001)LYQDKQEGK ;; 249.22 2.53E-50 2427620000 1099560 992430 537961 625992 1247590 1224040 1797200 1777460 763550 1671390 TRUE FALSE FALSE 1022486.522 913786.2324 746273.9063 1457341.012 1091105.629 1073030.39 1347521.551 1372771.16 829735.1288 1252863.065 0.816119934 0.729358425 0.595654806 1.163208536 0.870889772 0.856462625 1.075553737 1.095707263 0.662271203 1 20.25679731 -5.249347419 24.99231961 0.961287205 0.715275796 0.382453601 0.14375119 799.9471046 1653371.225 0.038507917 0.066053749 5.63E-06 5.249347419 -0.246011409 QGT(ph)PEASGHDENGTPDAFSQLLTCPYCDR ddPTM_HeLa_A485_30min_R1 1 QGTPEASGHDENGTPDAFSQLLTCPYCDR 29 0 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMN2;F6TDF5 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 QGT(0.994)PEAS(0.002)GHDENGT(0.003)PDAFSQLLTCPYCDR 74.838 0.0054822 62575000 7941.6 9034 9767.6 14260 14444 10134 20577 16607 8328.6 24878 TRUE FALSE FALSE 9708.181522 10090.44771 13381.0417 15038.98769 13005.90464 10664.60057 16180.55585 12534.10721 10000.07363 18676.37245 0.519810876 0.54027878 0.71646899 0.805241368 0.696382806 0.571020984 0.866365023 0.671121078 0.535439827 1 14.18892664 -11.63152175 2.240698846 9.694476088 0.66568436 0.453452673 0.112352286 6868554.372 459971.7726 303221781.6 0.02934413 2.34E-12 11.63152175 -9.028791728 QGVLTHGR ddPTM_HeLa_A485_30min_R1 2 QGVLTHGR 8 0 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 0 ; ; 138.1 0.00157 77123000 116172 164109 147351 122617 180280 154513 180367 215290 131791 180944 FALSE FALSE TRUE 142014.0606 183300.12 201862.2667 129315.2562 162330.6902 162603.0618 141830.117 162489.7899 158240.2448 135837.9908 1.045466439 1.349402467 1.486051623 0.951981514 1.19503159 1.197036711 1.0441123 1.196202837 1.164918915 1 17.0515275 -5.265099004 24.99990618 1.120009799 1.2992164 0.297583413 0.130228657 408.7980496 2792615.527 0.036123793 0.056004689 5.43E-06 5.265099004 0.179206601 QGVLTHGR ddPTM_HeLa_A486_30min_R1 2 QGVLTHGR 8 0 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 0 ; ; 128.69 0.001982 56667000 119888 114731 100573 48736 166699 114717 124891 125974 102453 135395 FALSE FALSE TRUE 111484.4703 105639.2977 139517.559 113459.871 145790.057 100564.3829 93641.95084 97292.47019 111333.7085 101491.2107 1.098464286 1.040871391 1.37467627 1.117928047 1.436479632 0.990867901 0.922660693 0.958629516 1.096978819 1 16.63099527 -6.456109374 24.99484596 0.986211291 1.208304393 0.453255471 0.120527628 173.0322127 64773.66513 0.042303909 0.037308519 3.50E-07 6.456109374 0.222093102 QGWPRPLT(ph)PPAAGGLQNHTVGIIVK ddPTM_HeLa_A485_30min_R1 2 QGWPRPLTPPAAGGLQNHTVGIIVK 25 1 C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6;K7EPF7;Q96QT6-4 C9J9G2 PHF12 PHD finger protein 12 1 0 QGWPRPLT(0.999)PPAAGGLQNHT(0.001)VGIIVK;QGWPRPLT(1)PPAAGGLQNHTVGIIVK ; 122.63 1.83E-05 1117220000 507980 642080 539940 579630 758370 663260 856770 965970 570050 817070 TRUE FALSE FALSE 620978.3985 717165.6706 739686.2748 611293.7192 682864.02 697987.268 673714.0903 729064.3429 684453.8062 613389.4861 1.012372094 1.169184812 1.205899826 0.996583302 1.113263327 1.137918539 1.098346329 1.188583045 1.115855132 1 19.22644391 QGWPRPLT(ph)PPAAGGLQNHTVGIIVK ddPTM_HeLa_A486_30min_R1 1 QGWPRPLTPPAAGGLQNHTVGIIVK 25 1 C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6;K7EPF7;Q96QT6-4 C9J9G2 PHF12 PHD finger protein 12 1 0 QGWPRPLT(1)PPAAGGLQNHTVGIIVK 125.59 8.33E-06 388720000 298170 282980 189160 113050 302510 275320 310700 316610 241390 337190 TRUE FALSE FALSE 277269.8228 260555.6342 262407.8179 263186.1132 264566.375 241353.8176 232959.5738 244524.8145 262313.8796 252755.4293 1.096988593 1.030860682 1.03818865 1.041267893 1.046728752 0.954890735 0.921679801 0.967436447 1.037816993 1 17.94738256 -6.253053642 24.14735236 0.970911761 1.048467837 0.557881662 0.032923812 300.7441039 866015.3837 0.011336249 0.011153533 5.58E-07 6.253053642 0.077556076 QGYACPYYHNS(ph)KDR ddPTM_HeLa_A485_30min_R1 1 QGYACPYYHNSKDR 14 1 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 QGYACPYYHNS(1)KDR 102.57 0.00025058 121750000 109770 100790 74456 154650 140700 109460 201390 187730 89330 218520 TRUE FALSE FALSE 134187.9578 112576.5137 102000.3728 163098.1379 126691.414 115191.1563 158361.3813 141688.9232 107257.7116 164046.9856 0.817984904 0.686245549 0.621775356 0.994216001 0.772287364 0.702183926 0.965341611 0.863709398 0.653823118 1 17.32374956 -14 0.143914583 1.682335558 0.722694007 0.200515016 0.121696961 229.1326145 1.993891314 45.48463993 0.706449552 1.00E-14 14 -0.959641551 QGYACPYYHNS(ph)KDR ddPTM_HeLa_A486_30min_R1 1 QGYACPYYHNSKDR 14 1 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 QGYACPYY(0.004)HNS(0.996)KDR 80.638 0.0027402 206450000 168840 151900 94721 82630 178910 204040 238390 237780 146040 298110 TRUE FALSE FALSE 157005.1879 139862.8908 131399.5079 192366.8159 156469.4395 178867.6193 178742.3006 183642.6847 158698.8648 223461.3156 0.702605672 0.625893079 0.588019038 0.860850637 0.700208173 0.800441091 0.799880284 0.821809736 0.710184957 1 17.76966558 -14 0.05223434 2.030387301 0.240530227 0.583768251 0.074044684 362.1199635 1.392150772 51.03916749 10.66485661 1.00E-14 14 -1.789857073 QHAHTVLSS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 QHAHTVLSSPPR 12 0 Q6ZNC4 Q6ZNC4 ZNF704 Zinc finger protein 704 1 0 QHAHTVLS(0.176)S(0.824)PPR 73.834 0.0039787 0 80174 103580 102290 46494 95842 83319 95106 102940 81097 111600 TRUE FALSE FALSE 74554.21662 95371.94357 141899.4274 108240.3817 83820.60267 73039.94891 71309.47287 79502.80916 88126.55326 83654.63361 0.89121443 1.140067674 1.69625305 1.293895831 1.001983979 0.873113009 0.852427054 0.950369462 1.053456927 1 16.35215783 -5.823608183 4.741837629 0.938204612 1.279077636 0.365418501 0.193352464 0.224478136 9.982169781 0.06517836 0.075899605 1.50E-06 5.823608183 0.340873023 QHDYS(ph)DYEDSSLEFLER ddPTM_HeLa_A485_30min_R1 2 QHDYSDYEDSSLEFLER 17 0 A0A0A0MQS0;F8W9L8;A8MW92 A0A0A0MQS0 PHF20L1 PHD finger protein 20-like protein 1 1 0 QHDY(0.433)S(0.537)DY(0.03)EDSSLEFLER;QHDYS(1)DYEDSSLEFLER ; 222.07 2.56E-34 90470000 34145.9 44988.7 45805.8 37486.1 48572.8 40753.7 46730 54742.7 40290 47940.9 TRUE FALSE FALSE 41741.53765 50249.73712 62751.27156 39533.87072 43736.72148 42887.50071 36745.75375 41316.96699 48375.83344 35990.11592 1.159805591 1.396209371 1.743569587 1.098464668 1.215242584 1.19164664 1.020995704 1.148008722 1.344142196 1 15.13531313 -5.321500152 24.99998472 1.151308002 1.429499385 0.402077989 0.160643053 244.839733 101912.6556 0.045508508 0.067500042 4.77E-06 5.321500152 0.278191383 QHDYS(ph)DYEDSSLEFLER ddPTM_HeLa_A486_30min_R1 1 QHDYSDYEDSSLEFLER 17 0 A0A0A0MQS0;F8W9L8;A8MW92 A0A0A0MQS0 PHF20L1 PHD finger protein 20-like protein 1 1 0 QHDYS(1)DYEDSSLEFLER 168.57 3.49E-12 46308000 23673 27019 22681 6442 30729 20745 25484 26919 28917 26871 TRUE FALSE FALSE 22013.64495 24877.91604 31463.69062 14997.30156 26874.68228 18185.69282 19107.63366 20790.13134 31423.54884 20142.3267 1.092904771 1.235106371 1.562068329 0.744566493 1.334239221 0.90285959 0.948630908 1.032161361 1.560075423 1 14.29794272 -5.251829606 24.99582331 1.074395413 1.290534433 0.151197647 0.240958737 1358.644627 3533940.83 0.06439927 0.109746424 5.60E-06 5.251829606 0.216139019 QHEAPSNRPLNELLTPQGPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 QHEAPSNRPLNELLTPQGPSPR 22 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 QHEAPSNRPLNELLT(0.003)PQGPS(0.997)PR;QHEAPSNRPLNELLTPQGPS(1)PR ; 153.82 4.69E-10 992110000 220924 300293 286752 188342 272004 285213 327207 358080 216037 271882 TRUE FALSE FALSE 270067.7816 335409.6541 392833.4975 198630.6466 244922.3267 300146.3117 257296.5514 270260.3186 259393.6443 204106.821 1.32316882 1.643304484 1.924646592 0.973170057 1.199971297 1.470535429 1.260597515 1.324112135 1.270872002 1 17.63896487 -1.00000589 0.063477203 0.54787194 3.100412021 0.261167148 0.232592621 436.3703203 2.066001951 15.99145177 101.6022542 0.099998644 1.00000589 2.552540082 QHEAPSNRPLNELLTPQGPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 QHEAPSNRPLNELLTPQGPSPR 22 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 QHEAPSNRPLNELLT(0.001)PQGPS(0.999)PR;QHEAPSNRPLNELLT(0.002)PQGPS(0.998)PR ; 149.66 7.89E-10 722980000 526350 515830 399950 115133 592190 443120 484980 488380 456330 549090 TRUE FALSE FALSE 489455.5831 474953.7522 554821.351 268035.4425 517912.0082 388452.3597 363632.8744 377186.5353 495885.0518 411594.29 1.189170003 1.153936689 1.347981166 0.651212733 1.258307078 0.9437749 0.88347405 0.916403712 1.204790892 1 18.65086344 -5.216997186 24.99999718 0.982326579 1.222720012 0.32564581 0.165153126 542.197704 305000.8404 0.042863244 0.074240852 6.07E-06 5.216997186 0.240393433 S(ph)HS(ph)WGTGTMR ddPTM_HeLa_A486_30min_R1 1 SHSWGTGTMR 10 0 F8WEF3 F8WEF3 LIMS2 2 0 S(1)HS(0.982)WGT(0.011)GT(0.007)MR 64.103 0.029028 608640000 3150000 558860 63792 138150 220560 84229 117040 178470 87907 138920 TRUE FALSE FALSE 2929201.267 514573.8983 88493.97081 321620.1817 192895.3082 73837.68236 87755.35408 137836.277 95526.84954 104133.5278 28.12928102 4.941481473 0.849812473 3.088536311 1.852384263 0.709067329 0.842719496 1.323649356 0.917349595 1 16.66807512 -4.254788045 3.177361939 1.404065963 32.29046156 0.992576137 0.691232892 0.02867898 0.448286767 0.193743767 2.221757065 5.56E-05 4.254788045 30.8863956 up QHEVEIPS(ph)PTQK ddPTM_HeLa_A485_30min_R1 4 QHEVEIPSPTQK 12 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;Q08499-5;Q08499-8;Q08499-4;D6RHE0;Q08499-6 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 QHEVEIPS(0.971)PT(0.029)QK;QHEVEIPS(0.973)PT(0.027)QK;QHEVEIPS(0.964)PT(0.036)QK;QHEVEIPS(0.906)PT(0.094)QK ;;; 75.463 0.0065548 3080210000 1338630 1192490 917550 1968800 1344850 1131440 1594400 1261840 1138970 2330990 TRUE FALSE FALSE 1636403.625 1331941.332 1256989.927 2076350.559 1210952.012 1190680.449 1253743.415 952371.7615 1367550.832 1749917.092 0.935132089 0.761145393 0.71831399 1.186542247 0.692005363 0.680421064 0.716458752 0.544238219 0.781494642 1 20.73885514 QHEVEIPS(ph)PTQK ddPTM_HeLa_A486_30min_R1 4 QHEVEIPSPTQK 12 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;Q08499-5;Q08499-8;Q08499-4;D6RHE0;Q08499-6 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 QHEVEIPS(0.997)PT(0.003)QK;QHEVEIPS(0.995)PT(0.005)QK;QHEVEIPS(0.992)PT(0.008)QK;QHEVEIPS(0.989)PT(0.011)QK ;;; 106.38 0.00039324 3465680000 1828660 1816130 866450 651410 1378800 1869370 2023540 1890380 1402190 2472980 TRUE FALSE FALSE 1700480.377 1672213.245 1201962.644 1516515.4 1205858.047 1638746.136 1517228.889 1459981.741 1523732.958 1853729.712 0.917329191 0.902080403 0.648402319 0.818088738 0.650503706 0.884026471 0.818473632 0.787591487 0.821982271 1 20.82199947 -8.211069622 4.305465923 0.999998703 0.800166452 0.307155481 0.087975752 3.515670545 70.67120885 0.085582087 0.022402631 6.15E-09 8.211069622 -0.199832251 QHFISFDTDR ddPTM_HeLa_A485_30min_R1 1 QHFISFDTDR 10 0 C9J0K6;P30626-3;P30626-2;P30626 C9J0K6 SRI Sorcin 0 0 129.89 0.00029025 227320000 7229.5 10613 9762.5 8486.7 14343 12687 12541 15783 6639.1 9837.7 FALSE FALSE TRUE 8837.677334 11854.09803 13374.055 8950.306932 12914.96056 13351.2717 9861.512899 11912.1945 7971.506473 7385.342439 1.196650989 1.605084412 1.810891656 1.211901412 1.748728737 1.807806721 1.33528174 1.612950869 1.079368565 1 12.8504491 -7.805033438 5.786702864 1.018823022 1.550504201 0.461728875 0.216548386 0.169065092 13.1202576 0.197660049 0.053325747 1.57E-08 7.805033438 0.53168118 QHFISFDTDR ddPTM_HeLa_A486_30min_R1 1 QHFISFDTDR 10 0 C9J0K6;P30626-3;P30626-2;P30626 C9J0K6 SRI Sorcin 0 0 114.86 0.0017936 105080000 39073 42281 41436 15578 65535 52147 58424 60340 47682 54778 FALSE FALSE TRUE 36334.18447 38930.49958 57481.12889 36266.37127 57314.98921 45713.63333 43805.69725 46601.89921 51815.11415 41061.23226 0.884878083 0.948108409 1.399888063 0.883226569 1.395841919 1.113303981 1.06683835 1.134936695 1.261898665 1 15.3254893 -4.548895676 24.74991088 1.156998303 0.900685437 0.284259728 0.154084335 190.8242485 181530.5341 0.036236478 0.09587939 2.83E-05 4.548895676 -0.256312866 QHGVNLSTPT(ph)PPFQQASGYGQHGYSTGYDDLTQGTAAGDYSK ddPTM_HeLa_A485_30min_R1 1 QHGVNLSTPTPPFQQASGYGQHGYSTGYDDLTQGTAAGDYSK 42 0 Q5T6F2;Q5T6F2-2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 QHGVNLS(0.007)T(0.006)PT(0.696)PPFQQAS(0.054)GY(0.024)GQHGY(0.024)S(0.054)T(0.054)GY(0.024)DDLT(0.054)QGT(0.003)AAGDYSK 70.375 0.0024581 86542000 16979 20025 11873 12422 24362 17394 23737 25711 15291 14760 TRUE FALSE FALSE 20755.91997 22366.74956 16265.31678 13100.58241 21936.43374 18304.72294 18665.39604 19405.33694 18359.76344 11080.60364 1.873175925 2.018549737 1.467908907 1.182298621 1.979714685 1.651960808 1.684510758 1.75128879 1.656928092 1 13.43574886 -8.067495665 18.41668828 0.999999998 1.694418348 0.448992755 0.231757982 1007.090505 274794.0103 0.234224166 0.060476389 8.56E-09 8.067495665 0.69441835 QHHPPYHQQHHQGPPPGGPGGR ddPTM_HeLa_A485_30min_R1 1 QHHPPYHQQHHQGPPPGGPGGR 22 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 88.264 0.00093897 56406000 7618 10789 7772.5 7615.9 4949 3489.5 4205 8859.4 5056.5 7658.2 FALSE FALSE TRUE 9312.597818 12050.6797 10647.87119 8031.937333 4456.260183 3672.204824 3306.567398 6686.618259 6071.293169 5749.151679 1.619821208 2.096079626 1.85207693 1.397064781 0.775116127 0.638738553 0.575140052 1.163061723 1.056032874 1 12.48913338 -5.519997747 2.776693418 0.850250895 1.87824245 0.826297028 0.203681195 0.110178387 1.714854528 0.067839252 0.099517788 3.02E-06 5.519997747 1.027991554 QHHPPYHQQHHQGPPPGGPGGR ddPTM_HeLa_A486_30min_R1 1 QHHPPYHQQHHQGPPPGGPGGR 22 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 42.711 0.033579 10342000 8807 3175 2051.9 2694.2 5615.4 3285.1 4724 2908.2 1495.8 5373.9 FALSE FALSE TRUE 8189.674779 2923.401437 2846.450632 6272.233757 4911.06417 2879.817762 3542.005235 2246.066346 1625.457148 4028.240462 2.033065021 0.725726645 0.706623812 1.557065378 1.219158642 0.714907114 0.879293396 0.557580007 0.403515422 1 11.97593409 -6.270344125 7.249685603 0.692858741 1.206871089 0.319040369 0.389695403 0.197080362 70.67004805 0.136283695 0.125668336 5.37E-07 6.270344125 0.514012348 QHIVNDMNPGNLHLFINAYNSR ddPTM_HeLa_A485_30min_R1 1 QHIVNDMNPGNLHLFINAYNSR 22 0 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 0 99.603 1.72E-05 8546100 7122.1 10706 12741 9408.2 16178 11520 13134 14132 11614 16469 FALSE FALSE TRUE 8706.386574 11957.97357 17454.4261 9922.146143 14567.26152 12123.16939 10327.81361 10666.10484 13944.82327 12363.58139 0.704196163 0.967193339 1.411761329 0.802530095 1.178239626 0.980554825 0.835341579 0.862703492 1.127895133 1 13.59380909 -6.520779645 24.9564021 0.939744328 1.026602042 0.012861019 0.196186521 330.9376614 3934652.425 0.074185044 0.058394275 3.01E-07 6.520779645 0.086857715 QHIVNDMNPGNLHLFINAYNSR ddPTM_HeLa_A486_30min_R1 1 QHIVNDMNPGNLHLFINAYNSR 22 0 Q92597;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 0 0 81.477 0.00049075 5841000 6534.2 7916.9 7624.7 2911.7 10468 8964.2 10880 9800.9 7593.2 7298.7 FALSE FALSE TRUE 6076.186323 7289.536011 10577.18804 6778.584749 9155.00583 7858.288145 8157.708923 7569.449022 8251.38469 5471.058013 1.110605354 1.332381414 1.933298461 1.238989741 1.673351993 1.436337931 1.491066061 1.383543915 1.508188118 1 12.41760414 -10.1973921 3.902834697 0.999659242 1.465066426 0.285732661 0.216099388 52183251.59 73310360.65 205008.6797 0.052481545 6.35E-11 10.1973921 0.465407184 QHLVDFLAAVGGHFR ddPTM_HeLa_A485_30min_R1 1 QHLVDFLAAVGGHFR 15 0 H0YHS6;Q9Y2Z4 H0YHS6 YARS2 "Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial" 0 0 133.66 9.14E-06 9507000 7858.8 9858.2 8085.9 7111.4 9754.7 7971.6 9630.6 8836.2 7414.8 12623 FALSE FALSE TRUE 9606.962947 11011.03074 11077.21089 7499.877775 8783.487817 8388.98065 7572.943635 6669.108095 8902.882347 9476.318409 1.013786423 1.161952381 1.168936122 0.791433704 0.926888211 0.885257363 0.799144067 0.703765725 0.939487464 1 13.21011096 -5.259950719 24.96882395 0.852207704 1.119597727 0.621460553 0.089497637 79.61456819 1335339.296 0.024562207 0.039757667 5.50E-06 5.259950719 0.267390023 QHLVDFLAAVGGHFR ddPTM_HeLa_A486_30min_R1 1 QHLVDFLAAVGGHFR 15 0 H0YHS6;Q9Y2Z4 H0YHS6 YARS2 "Tyrosine--tRNA ligase;Tyrosine--tRNA ligase, mitochondrial" 0 0 142.1 1.21E-06 8414300 7503.7 5601.9 5469.4 2573.5 7053.1 5198 6348 6379.5 6070 7484 FALSE FALSE TRUE 6977.729379 5157.985042 7587.298156 5991.238057 6168.43443 4556.723609 4759.663258 4927.027114 6596.152487 5609.957687 1.24381141 0.919433858 1.352469765 1.067964928 1.099550972 0.812256324 0.848431222 0.878264577 1.175793625 1 12.45377417 -6.102624227 5.805660346 0.92984939 1.137643917 0.321728691 0.140925857 0.276224353 12.98880439 0.046054413 0.046294688 7.90E-07 6.102624227 0.207794527 QHREPS(ph)EQEHRR ddPTM_HeLa_A485_30min_R1 2 QHREPSEQEHRR 12 2 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 QHREPS(1)EQEHRR;QHREPS(1)EQEHRR ; 186.77 1.97E-13 1129250000 204651 363520 280150 201716 352890 289650 381230 556240 303580 277270 TRUE FALSE FALSE 250174.9089 406030.5018 383789.143 212735.2343 317755.0325 304815.6261 299777.0961 419821.2678 364505.7214 208151.6918 1.201887464 1.950647138 1.843795454 1.022020203 1.526555128 1.464391778 1.44018573 2.01690058 1.751154258 1 17.66727576 QHYIDLK ddPTM_HeLa_A485_30min_R1 1 QHYIDLK 7 0 Q32Q12;P22392-2;P22392;J3KPD9;F6XY72;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 0 87.181 0.025929 239300000 395940 403120 302320 486110 491060 477000 624350 674480 362710 572780 FALSE FALSE TRUE 484015.487 450261.3773 414160.7486 512664.9584 442168.3422 501974.9824 490952.522 509062.7225 435502.57 429996.4872 1.125626607 1.047128036 0.9631724 1.192253829 1.028306871 1.167393217 1.141759379 1.183876468 1.012804948 1 18.71396535 -5.262780599 24.99992409 1.112521667 1.045490922 0.102402962 0.076296718 240.0698742 4474851.139 0.02040207 0.032208624 5.46E-06 5.262780599 -0.067030745 QIANS(ph)QDGYVWQVTDMNR ddPTM_HeLa_A485_30min_R1 2 QIANSQDGYVWQVTDMNR 18 0 P10155-3;P10155-5;P10155-4;P10155;P10155-2;D6RDN1;D6RE09 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 1 0 QIANS(1)QDGYVWQVTDMNR;QIANS(1)QDGYVWQVTDMNR ; 255.98 3.47E-46 159620000 119127 168399 199458 134699 200758 172330 213437 209920 150635 172611 TRUE FALSE FALSE 145626.3902 188091.7982 273245.8143 142057.2653 180769.8286 181352.9323 167834.4413 158436.7909 180866.0628 129582.2544 1.123814298 1.451524355 2.108666929 1.096270982 1.395019939 1.399519812 1.295196184 1.222673518 1.395762589 1 16.98350864 -8.343238473 0.312637503 0.940181492 1.500955353 0.178798657 0.264153719 4.689837101 1.078210784 0.850907777 0.349352798 4.54E-09 8.343238473 0.560773861 QIANS(ph)QDGYVWQVTDMNR ddPTM_HeLa_A486_30min_R1 3 QIANSQDGYVWQVTDMNR 18 0 P10155-3;P10155-5;P10155-4;P10155;P10155-2;D6RDN1;D6RE09 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 1 0 QIANS(1)QDGYVWQVTDMNR;QIANS(1)QDGYVWQVTDMNR;QIANS(1)QDGYVWQVTDMNR ;; 199.75 3.69E-25 344240000 237418 246811 213499 81626 287413 241639 276318 265384 229606 261766 TRUE FALSE FALSE 220776.2242 227252.7975 296171.5305 190029.4531 251362.9815 211828.037 207180.3138 204961.8565 249508.4329 196218.0898 1.125157341 1.158164355 1.509399724 0.968460417 1.281038776 1.079554068 1.05586755 1.044561471 1.27158731 1 17.58209853 -5.900808537 1.316707421 1.095188024 1.228671929 0.119669502 0.146019255 0.936786871 3.396209734 0.05954246 0.073811877 1.26E-06 5.900808537 0.133483905 QIAQSKEDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_HeLa_A485_30min_R1 2 QIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFK 34 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-10 SON Protein SON 1 0 QIAQSKEDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK;QIAQSKEDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK ; 209.09 9.15E-30 8314670000 2338670 1751800 1324070 3724820 3157660 3378880 5604060 6686860 2104030 5339860 TRUE FALSE FALSE 2858899.073 1956657.771 1813898.592 3928297.485 2843272.283 3555792.932 4406706.8 5046897.1 2526289.522 4008731.175 0.71316807 0.488099023 0.452486962 0.979935374 0.709269881 0.887012069 1.099277205 1.25897619 0.630196791 1 21.93471424 -5.668965247 1.071807172 0.999958462 0.547383266 0.424843697 0.191567638 0.477568973 1.155813947 0.082017908 0.138538695 2.14E-06 5.668965247 -0.452575196 QIAQSKEDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_HeLa_A486_30min_R1 1 QIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFK 34 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-10 SON Protein SON 1 0 QIAQSKEDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK 248.35 1.56E-51 8121100000 4291500 3131600 1498500 2819800 4196100 4931900 7152700 7033700 3031600 7209200 TRUE FALSE FALSE 3990688.011 2883440.611 2078759.331 6564636.905 3669786.011 4323452.322 5363018.806 5432280.055 3294381.529 5403969.396 0.738473466 0.533578264 0.384672669 1.214780548 0.67909082 0.800051223 0.992422128 1.005238864 0.609622536 1 22.36558807 -5.243952348 24.9999342 0.890850911 0.550375152 0.430455005 0.183178084 797.6547777 1140347.388 0.048587399 0.08391097 5.70E-06 5.243952348 -0.340475759 QIASNS(ph)PGSSPK ddPTM_HeLa_A485_30min_R1 4 QIASNSPGSSPK 12 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 QIAS(0.008)NS(0.991)PGS(0.001)SPK;QIASNS(0.989)PGS(0.011)SPK;QIAS(0.1)NS(0.899)PGSSPK;QIAS(0.001)NS(0.998)PGS(0.001)SPK ;;; 184.37 6.27E-13 324348000 586167 579720 488248 698219 687419 657112 895750 938070 532942 951060 TRUE FALSE FALSE 716557.8269 647513.2111 668871.2529 736360.936 618977.1507 691517.3682 704365.6949 708006.8617 639898.571 713978.245 1.00361297 0.906908881 0.936823016 1.031349262 0.866941192 0.968541231 0.986536635 0.991636463 0.896243794 1 19.44552059 QIASNS(ph)PGSSPK ddPTM_HeLa_A486_30min_R1 4 QIASNSPGSSPK 12 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 QIASNS(0.999)PGSSPK;QIAS(0.001)NS(0.999)PGSSPK;QIASNS(1)PGSSPK;QIAS(0.012)NS(0.988)PGSSPK ;;; 262.39 1.67E-33 422227000 929690 878470 547129 365014 871780 960230 1082400 1057770 719809 1177380 TRUE FALSE FALSE 864523.5319 808856.8379 758992.0014 849771.0388 762433.2234 841766.5855 811572.0715 816938.862 782202.6237 882556.3845 0.979567478 0.916493101 0.859992647 0.96285184 0.8638918 0.953782217 0.919569657 0.925650617 0.886291955 1 19.75132893 QIASQFPPPPTPPAMESQPLKPVPANVAPQS(ph)PPAVK ddPTM_HeLa_A485_30min_R1 1 QIASQFPPPPTPPAMESQPLKPVPANVAPQSPPAVK 36 1 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 QIASQFPPPPTPPAMES(0.006)QPLKPVPANVAPQS(0.994)PPAVK 61.283 0.0051752 81565000 36544 27121 20130 41372 38831 36105 43213 57590 26123 49871 TRUE FALSE FALSE 44673.08672 30292.56503 27576.92468 43632.0476 34964.8493 37995.40197 33980.18953 43465.9622 31365.64649 37439.07751 1.193220819 0.809116224 0.736581308 1.165414602 0.933913216 1.01485946 0.907612895 1.160978451 0.837778294 1 15.19225727 -5.262780118 24.99998451 1.003293109 0.902587139 0.07245783 0.146088603 303.0366038 5650578.556 0.039293711 0.062045505 5.46E-06 5.262780118 -0.10070597 QIATLHAQVADMKK ddPTM_HeLa_A486_30min_R1 1 QIATLHAQVADMKK 14 1 P35579 P35579 MYH9 Myosin-9 0 0 76.82 0.0097598 8713500 33550 25330 14867 11931 29832 29258 37444 35424 17701 41622 FALSE FALSE TRUE 31198.31825 23322.75855 20623.90055 27775.97096 26090.19239 25648.44543 28075.11516 27358.7285 19235.33693 31199.58029 0.99995955 0.747534369 0.661031346 0.890267456 0.836235364 0.822076618 0.89985554 0.87689412 0.616525503 1 14.929239 QICLVMLETLS(ph)QSPQGR ddPTM_HeLa_A486_30min_R1 2 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QICLVMLET(0.037)LS(0.482)QS(0.482)PQGR;QICLVMLET(0.264)LS(0.368)QS(0.368)PQGR ; 78.285 0.0013819 29545000 54108 53501 51200 29630 59051 45796 60618 65766 43128 64399 TRUE FALSE FALSE 50315.30861 49261.38591 71026.01118 68980.13742 51644.27295 40146.15514 45450.73525 50792.51746 46866.36976 48273.07123 1.042305934 1.020473416 1.471338147 1.428956883 1.069836073 0.831647006 0.941533946 1.052191546 0.970859499 1 15.558931 -5.991821483 24.11910086 0.960216908 1.242489318 0.464134789 0.14266778 122.4489867 361107.0669 0.048905064 0.055345683 1.02E-06 5.991821483 0.28227241 QICLVMLETLSQS(ph)PQGR ddPTM_HeLa_A485_30min_R1 14 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.006)QS(0.994)PQGR;QICLVMLETLS(0.001)QS(0.999)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.061)QS(0.939)PQGR;QICLVMLET(0.002)LS(0.024)QS(0.974)PQGR;QICLVMLET(0.002)LS(0.106)QS(0.891)PQGR;QICLVMLETLS(0.022)QS(0.978)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR ;;;;;;;;;;;;; 391.64 1.28E-135 12959130000 2857253 4021262 4051842 3032496 4366541 3657608 4359815 5112210 3319478 4140016 TRUE FALSE FALSE 3492839.072 4491513.611 5550786.967 3198153.578 3931792.846 3849114.699 3428304.909 3858432.482 3985666.787 3107986.203 1.123827084 1.445152365 1.785975421 1.029011511 1.265061229 1.238459391 1.103063104 1.241457404 1.282395264 1 21.56754867 -5.290154636 24.99952644 1.180266043 1.451001916 0.358009179 0.174748532 790.1357178 687891.1512 0.049226424 0.073029011 5.13E-06 5.290154636 0.270735874 QICLVMLETLSQS(ph)PQGR ddPTM_HeLa_A486_30min_R1 13 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.006)QS(0.994)PQGR;QICLVMLET(0.001)LS(0.053)QS(0.946)PQGR;QICLVMLETLS(0.044)QS(0.956)PQGR;QICLVMLETLS(0.005)QS(0.995)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.041)QS(0.959)PQGR;QICLVMLET(0.004)LS(0.162)QS(0.834)PQGR;QICLVMLETLS(0.023)QS(0.977)PQGR;QICLVMLETLS(0.021)QS(0.979)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR ;;;;;;;;;;;; 441.6 1.91E-193 7023277000 2169168.9 2310502.6 2090838.1 1072288.7 2826999.3 2194781.4 2483402 2657548 2148853.9 2562148 TRUE FALSE FALSE 2017121.362 2127409.959 2900466.607 2496342.284 2472410.687 1924011.586 1862028.553 2052482.334 2335118.286 1920569.464 1.050272536 1.107697482 1.510211769 1.29979276 1.287332082 1.00179224 0.969518983 1.068684248 1.215846826 1 20.87310271 -6.257859634 24.87134817 1.05035813 1.260201223 0.367380219 0.130877122 341.3220511 2371439.966 0.047490224 0.045719013 5.52E-07 6.257859634 0.209843094 QICVVMLESPPKGVTIPYRPKPSS(ph)SPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 QICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDR 35 3 Q15366-6;Q15366-3 Q15366-6 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLES(0.08)PPKGVT(0.051)IPYRPKPS(0.254)S(0.308)S(0.308)PVIFAGGQDR 106.02 9.95E-05 772560000 34945 57085 28459 26721 40244 87209 103500 190400 32495 50174 TRUE FALSE FALSE 42718.39469 63760.59418 38987.16838 28180.70057 36237.16605 91775.12839 81386.37948 143704.1015 39016.44844 37666.54518 1.134120331 1.692764597 1.035060906 0.748162605 0.962051759 2.436515692 2.160707309 3.815165441 1.035838255 1 15.20099609 -6.261235766 24.99988974 2.270034577 1.121803796 0.26757211 0.77859663 21.28868766 2613969.998 0.256158863 0.240865905 5.48E-07 6.261235766 -1.148230781 QICVVMLETLSQS(ph)PPK ddPTM_HeLa_A485_30min_R1 4 QICVVMLETLSQSPPK 16 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-5;Q15366-8 H3BRU6;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLETLS(0.029)QS(0.971)PPK;QICVVMLETLS(0.001)QS(0.999)PPK;QICVVMLETLSQS(1)PPK;QICVVMLETLSQS(1)PPK ;;; 269.87 1.14E-51 1430246000 662081 409804 356861 1210190 609293 494073 794197 587672 438224 1538700 TRUE FALSE FALSE 809358.6343 457727.013 488878.7341 1276299.615 548629.6496 519941.8983 624510.323 443544.5206 526171.5372 1155130.408 0.700664296 0.396255704 0.423223846 1.104896561 0.4749504 0.450115325 0.540640536 0.383977876 0.455508342 1 20.1396243 -10.60534898 2.805033343 1.03541548 0.54602232 0.303388788 0.205546488 42187436.71 41604709.32 11007862.41 0.054073664 2.48E-11 10.60534898 -0.489393159 QICVVMLETLSQS(ph)PPK ddPTM_HeLa_A486_30min_R1 4 QICVVMLETLSQSPPK 16 0 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-5;Q15366-8 H3BRU6;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLETLSQS(1)PPK;QICVVMLETLSQS(1)PPK;QICVVMLETLS(0.038)QS(0.962)PPK;QICVVMLETLS(0.004)QS(0.996)PPK ;;; 300.28 1.00E-67 1892030000 421039 523291 279530 393805 397445 618231 719932 628505 471516 884260 TRUE FALSE FALSE 391526.3403 481823.5154 387771.5021 916797.9418 347593.7421 541959.9449 539797.3989 485408.1317 512387.3865 662835.5404 0.590683988 0.726912614 0.585019177 1.38314542 0.524404201 0.817638633 0.814376065 0.732320617 0.773023405 1 19.33829143 -14 0.026894551 2.061197213 3.08E-08 0.08595988 0.225623584 5772.039202 11.68292023 667.8927936 296.6089089 1.00E-14 14 -2.061197182 QICVVMLETLSQS(ph)PPKGVTIPYRPK ddPTM_HeLa_A486_30min_R1 2 QICVVMLETLSQSPPKGVTIPYRPK 25 2 H3BRU6;F8VZX2;Q15366-2;Q15366;Q15366-5;Q15366-8 H3BRU6;Q15366-2;Q15366-5 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLETLSQS(1)PPKGVTIPYRPK;QICVVMLETLSQS(0.992)PPKGVT(0.008)IPYRPK ; 221.69 1.83E-38 523480000 415040 458170 244117 313780 427850 620160 726970 650360 434730 752640 TRUE FALSE FALSE 385947.8393 421862.9406 338645.6401 730495.6976 374185.0635 543650.9645 545074.4169 502287.2253 472412.7464 564174.0451 0.684093575 0.747753188 0.6002503 1.294805573 0.663244023 0.963622785 0.966145858 0.890305447 0.837352853 1 19.10578077 QICVVMLETLSQS(ph)PPKGVTIPYRPKPS(ph)SSPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 QICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 39 3 Q15366-2;Q15366 Q15366-2 PCBP2 Poly(rC)-binding protein 2 2 0 QICVVMLET(0.083)LS(0.124)QS(0.781)PPKGVT(0.175)IPY(0.009)RPKPS(0.285)S(0.258)S(0.286)PVIFAGGQDR 133.69 3.26E-07 160130000 25550 18367 12090 32154 28432 30510 46967 49128 17411 52135 TRUE FALSE FALSE 31233.50935 20514.86088 16562.59411 33910.4916 25601.21025 32107.45642 36932.11676 37079.28097 20905.228 39138.70397 0.798021043 0.5241579 0.423176867 0.866418357 0.654114921 0.820350527 0.943621352 0.947381421 0.534131841 1 15.25630836 -5.707617131 1.417610209 0.844235665 0.591790034 0.264483812 0.165713243 0.544414762 2.277714683 0.061968498 0.0907645 1.96E-06 5.707617131 -0.252445631 QICVVMLETLSQS(ph)PPKGVTIPYRPKPS(ph)SSPVIFAGGQDR ddPTM_HeLa_A486_30min_R1 3 QICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 39 3 Q15366-2;Q15366 Q15366-2 PCBP2 Poly(rC)-binding protein 2 2 0 QICVVMLETLS(0.002)QS(0.998)PPKGVTIPYRPKPS(0.418)S(0.357)S(0.225)PVIFAGGQDR;QICVVMLET(0.037)LS(0.17)QS(0.703)PPKGVT(0.168)IPY(0.082)RPKPS(0.298)S(0.28)S(0.263)PVIFAGGQDR;QICVVMLET(0.003)LS(0.015)QS(0.982)PPKGVT(0.012)IPYRPKPS(0.386)S(0.326)S(0.276)PVIFAGGQDR ;; 261.83 1.85E-65 2047250000 216112 207334 127185 193424 248047 280189 397710 379207 187372 481480 TRUE FALSE FALSE 200963.6648 190904.0987 176434.4381 450300.8471 216934.6323 245622.1299 298198.7515 292869.8441 203613.5558 360914.2741 0.556818279 0.528945826 0.488854143 1.247667048 0.601069694 0.680555322 0.826231526 0.811466504 0.56416044 1 18.46129668 QICVVMLETLSQS(ph)PPKGVTIPYRPKPSSSPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 4 QICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 39 3 Q15366-2;Q15366 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLET(0.002)LS(0.084)QS(0.882)PPKGVT(0.02)IPY(0.003)RPKPS(0.003)S(0.003)S(0.003)PVIFAGGQDR;QICVVMLETLS(0.018)QS(0.967)PPKGVT(0.014)IPYRPKPSSSPVIFAGGQDR;QICVVMLETLSQS(1)PPKGVTIPYRPKPSSSPVIFAGGQDR;QICVVMLETLSQS(1)PPKGVTIPYRPKPSSSPVIFAGGQDR ;;; 323.99 6.17E-112 5779560000 1246681 1019242 735641 1523886 1265466 1639580 2451850 2721170 847210 2211200 TRUE FALSE FALSE 1524000.887 1138433.486 1007785.218 1607132.033 1139471.762 1725425.874 1927992.218 2053798.791 1017237.276 1659988.534 0.918079165 0.685808042 0.607103723 0.968158515 0.686433513 1.039420356 1.161449117 1.237236733 0.612797772 1 20.66274185 -6.272770054 23.44392473 1.034462407 0.769878844 0.289129289 0.183864434 384.9818157 796549.6954 0.063680752 0.056728841 5.34E-07 6.272770054 -0.264583563 QICVVMLETLSQS(ph)PPKGVTIPYRPKPSSSPVIFAGGQDR ddPTM_HeLa_A486_30min_R1 1 QICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 39 3 Q15366-2;Q15366 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLETLSQS(1)PPKGVTIPYRPKPSSSPVIFAGGQDR 279.48 3.75E-79 2373300000 260980 288160 149440 253150 355150 375020 564790 480990 277100 577280 TRUE FALSE FALSE 242686.6497 265325.1521 207307.1701 589345.9935 310603.7754 328753.8453 423473.5683 371479.0769 301119.2511 432725.3305 0.56083301 0.613149112 0.479073342 1.361940131 0.717785055 0.759728683 0.978619781 0.858463905 0.695866939 1 18.72309205 QICVVMLETLSQSPPKGVT(ph)IPYRPKPSSSPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 QICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 39 3 Q15366-2;Q15366 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLETLS(0.02)QS(0.084)PPKGVT(0.452)IPY(0.407)RPKPS(0.013)S(0.013)S(0.011)PVIFAGGQDR 99.709 1.71E-05 525520000 56747 140140 61025 30726 90271 206620 238900 552470 37735 38661 TRUE FALSE FALSE 69370.17438 156528.1539 83600.68696 32404.48358 81283.30228 217438.3037 187857.0634 416975.8663 45308.06837 29023.5242 2.390136149 5.393147739 2.880445751 1.116490311 2.800600703 7.491795351 6.472579348 14.36682408 1.561080869 1 14.82493509 -3.024051732 18.77728625 4.887255116 3.840738792 0 3.929693449 0 0 0.928883086 0 0.000946124 3.024051732 -1.046516325 QICVVMLETLSQSPPKGVTIPYRPKPS(ph)SSPVIFAGGQDR ddPTM_HeLa_A485_30min_R1 1 QICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 39 3 Q15366-2;Q15366 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLETLS(0.019)QS(0.105)PPKGVT(0.153)IPY(0.062)RPKPS(0.257)S(0.202)S(0.202)PVIFAGGQDR 109.14 2.39E-05 448850000 62531 179350 59894 43511 94174 247190 268790 646680 55358 56309 TRUE FALSE FALSE 76440.80522 200323.4224 82051.283 45887.89575 84797.7059 260132.4862 211360.8207 488080.716 66467.84283 42272.20259 1.808299557 4.738892466 1.941022184 1.085533588 2.005992134 6.153748095 4.999995452 11.54613874 1.572377088 1 15.36742167 -4.250882138 22.53694769 4.120735269 1.808294182 0.035014174 3.083728778 1452.754143 3100994.344 0.800128021 10.06126682 5.61E-05 4.250882138 -2.312441086 QIDSS(ph)PVGGETDETTVSQNYR ddPTM_HeLa_A485_30min_R1 4 QIDSSPVGGETDETTVSQNYR 21 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 QIDS(0.069)S(0.931)PVGGETDETTVSQNYR;QIDS(0.169)S(0.831)PVGGETDETTVSQNYR;QIDS(0.001)S(0.999)PVGGETDETTVSQNYR;QIDS(0.001)S(0.999)PVGGETDETTVSQNYR ;;; 366.6 5.45E-142 3760700000 952660 1427510 1412690 1000900 1566820 1294900 1498990 1738960 1246370 1202960 TRUE FALSE FALSE 1164575.93 1594444.877 1935302.818 1055576.633 1410821.899 1362698.962 1178718.541 1312477.333 1496505.027 903084.2108 1.289554082 1.765555036 2.142992641 1.168857367 1.562226293 1.508938973 1.305214427 1.453327738 1.65710463 1 19.784501 -5.2810637 24.99684444 1.408196505 1.735986134 0.268520734 0.264236557 1116.706858 1422423.5 0.073375462 0.109009845 5.24E-06 5.2810637 0.327789629 QIDSS(ph)PVGGETDETTVSQNYR ddPTM_HeLa_A486_30min_R1 4 QIDSSPVGGETDETTVSQNYR 21 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 QIDS(0.001)S(0.999)PVGGETDETTVSQNYR;QIDSS(1)PVGGETDETTVSQNYR;QIDS(0.023)S(0.977)PVGGETDETTVSQNYR;QIDS(0.004)S(0.996)PVGGETDETTVSQNYR ;;; 359.78 2.05E-128 3920720000 1189660 1228910 1060890 368343 1346970 1074250 1263800 1290710 994370 1148700 TRUE FALSE FALSE 1106270.977 1131526.696 1471695.02 857521.119 1178020.463 941719.9572 947583.8729 996843.509 1080562.792 861058.0432 1.284780958 1.314111987 1.709170516 0.995892351 1.368108076 1.093677673 1.100487801 1.157696066 1.254924451 1 19.71575097 -5.279460936 24.99821288 1.151347042 1.423830287 0.451623242 0.149509329 754.9423998 1047200.162 0.041099641 0.061104212 5.25E-06 5.279460936 0.272483245 QIESSDYDSSSSK(ac)GK(ac)K ddPTM_HeLa_A485_30min_R1 2 QIESSDYDSSSSKGKK 16 2 Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-8 Q9UNL4-3 ING4 Inhibitor of growth protein 4 0 2 ; QIESSDYDSSSSK(1)GK(1)K;QIESSDYDSSSSK(1)GK(1)K 355.74 6.11E-138 461480000 522050 569110 507650 635170 712630 655880 813190 836610 555740 842660 FALSE TRUE FALSE 638178.2214 635662.4639 695450.8601 669867.7288 641678.055 690220.8626 639445.3133 631430.0857 667271.9205 632600.37 1.008817338 1.004840487 1.099352598 1.058911377 1.014349794 1.091085139 1.010820328 0.998150042 1.054807983 1 19.27093487 -9.942547865 7.176869855 0.999999999 1.038262206 0.096177903 0.034842943 5.68E-10 7.16E-11 0.034478238 0.008362201 1.14E-10 9.942547865 0.038262207 QIESSDYDSSSSK(ac)GK(ac)K ddPTM_HeLa_A486_30min_R1 2 QIESSDYDSSSSKGKK 16 2 Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-8 Q9UNL4-3 ING4 Inhibitor of growth protein 4 0 2 ; QIESSDYDSSSSK(1)GK(1)K;QIESSDYDSSSSK(1)GK(1)K 367.86 1.18E-138 230559000 308650 321326 231523 112136 369819 348305 392451 368845 291996 403540 FALSE TRUE FALSE 287015.2289 295862.9575 321174.906 261058.275 323432.8526 305334.6704 294255.6089 284867.0453 317306.4484 302490.9574 0.948839038 0.978088602 1.061766966 0.863028361 1.069231475 1.009400985 0.972774894 0.941737392 1.048978294 1 18.20653249 -4.367397541 4.596234667 0.992855306 0.949657728 0.054621107 0.058308421 0.682427482 21.45106262 0.013972252 0.065133938 4.29E-05 4.367397541 -0.043197577 QIESSDYDSSSSK(ac)GKK ddPTM_HeLa_A485_30min_R1 2 QIESSDYDSSSSKGKK 16 2 Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-8 Q9UNL4-3 ING4 Inhibitor of growth protein 4 0 1 ; QIESSDYDSSSSK(0.999)GK(0.001)K;QIESSDYDSSSSK(0.872)GK(0.128)K 258.82 5.83E-42 159471000 67516.4 84965.4 55014.6 83515.8 106547 116959 153614 184604 87444.3 136073 FALSE TRUE FALSE 82535.19025 94901.36443 75366.78989 88078.05668 95938.80657 123082.7924 120793.114 139329.5796 104993.5689 102152.5053 0.807960509 0.929016514 0.737786994 0.862221209 0.939172331 1.204892547 1.182478233 1.363936979 1.027811981 1 16.64036506 -6.10772003 2.865618228 1.181564065 0.835862611 0.673719478 0.105566262 0.147976544 2.349502011 0.03588803 0.03658039 7.80E-07 6.10772003 -0.345701454 QIESSDYDSSSSK(ac)GKK ddPTM_HeLa_A486_30min_R1 2 QIESSDYDSSSSKGKK 16 2 Q9UNL4-3;Q9UNL4-6;Q9UNL4-2;Q9UNL4;Q9UNL4-8 Q9UNL4-3 ING4 Inhibitor of growth protein 4 0 1 ; QIESSDYDSSSSK(0.999)GK(0.001)K;QIESSDYDSSSSK(0.995)GK(0.005)K 217.91 8.53E-24 137630000 95089 103311 67611 54085 134025 122162 147914 147830 90987 146864 FALSE TRUE FALSE 88423.75214 95124.26011 93791.78989 125912.6133 117214.3348 107090.8945 110904.3527 114172.3361 98873.82642 110088.2985 0.803207547 0.864072398 0.851968749 1.143742024 1.064730188 0.972772729 1.007412725 1.037097836 0.898132025 1 16.7483016 -5.147634733 8.18359621 1.018754353 0.840028563 0.641649778 0.060984156 0.190299479 12.45858348 0.016981363 0.029542029 7.12E-06 5.147634733 -0.17872579 QIESSDYDSSSSK(ac)GR ddPTM_HeLa_A485_30min_R1 1 QIESSDYDSSSSKGR 15 1 Q9UNL4-4 Q9UNL4-4 ING4 Inhibitor of growth protein 4 0 1 QIESSDYDSSSSK(1)GR 151.74 7.68E-07 0 4515.8 5322 5398.7 4475.9 5566.8 4819 5542.5 5968.6 4940.5 5744.9 FALSE TRUE FALSE 5520.324131 5944.361605 7395.903789 4720.407083 5012.549846 5071.315388 4358.299597 4504.791492 5932.013033 4312.802157 1.279985478 1.378306119 1.71487203 1.094510462 1.162248966 1.175874803 1.010549392 1.044516147 1.375442883 1 12.07440982 -5.293468573 24.78145107 1.124275675 1.449779758 0.531274586 0.14388454 446.5977469 345538.1741 0.040342098 0.059842485 5.09E-06 5.293468573 0.325504083 QIFEDHVFCHS(ph)L ddPTM_HeLa_A485_30min_R1 2 QIFEDHVFCHSL 12 0 Q13137-5;Q13137-2;Q13137;Q13137-3;Q13137-4 Q13137-5 CALCOCO2 Calcium-binding and coiled-coil domain-containing protein 2 1 0 QIFEDHVFCHS(1)L;QIFEDHVFCHS(1)L ; 153.94 5.81E-08 141058000 175912 233340 223980 178436 264530 168683 201727 222091 194206 229170 TRUE FALSE FALSE 215043.0175 260627.0832 306839.5226 188183.5069 238192.4644 177514.981 158626.3785 167622.834 233181.3628 172042.1366 1.249943891 1.514902619 1.783513787 1.093822192 1.384500734 1.03181107 0.92202051 0.974312673 1.355373558 1 17.39240243 -5.785190809 1.473633301 1.055405061 1.492497237 0.438218761 0.19808826 0.362560224 1.640289795 0.075546756 0.101826601 1.64E-06 5.785190809 0.437092176 QIFEDHVFCHS(ph)L ddPTM_HeLa_A486_30min_R1 3 QIFEDHVFCHSL 12 0 Q13137-5;Q13137-2;Q13137;Q13137-3;Q13137-4 Q13137-5 CALCOCO2 Calcium-binding and coiled-coil domain-containing protein 2 1 0 QIFEDHVFCHS(1)L;QIFEDHVFCHS(1)L;QIFEDHVFCHS(1)L ;; 145.52 1.39E-07 204346000 261757 316531 274721 103903 348735 264360 293828 319850 259206 286484 TRUE FALSE FALSE 243409.186 291447.9308 381100.3285 241891.435 304993.4045 231745.951 220309.1266 247027.1373 281674.1848 214746.5417 1.133471972 1.357171708 1.774651761 1.126404333 1.420248271 1.07916034 1.025903024 1.150319513 1.31165877 1 17.71227537 -6.262830554 24.98441193 1.117334211 1.37189289 0.309666802 0.185556765 161.9136882 2907826.75 0.064615276 0.060061453 5.46E-07 6.262830554 0.254558679 QIFILLFQR ddPTM_HeLa_A485_30min_R1 2 QIFILLFQR 9 0 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 ; ; 255.21 4.34E-32 133182000 138861 148617 179722 143361 221550 114880 165675 129357 128339 238280 FALSE FALSE TRUE 169750.1504 165996.4654 246208.6467 151192.4484 199491.7041 120894.9392 130277.1828 97631.99293 154095.4601 178881.1812 0.948954771 0.927970535 1.376380931 0.845211595 1.115219067 0.675839338 0.728288923 0.545792421 0.861440309 1 17.44864209 -6.263151485 24.99227416 0.731760262 1.04393188 0.387059125 0.174371558 146.0681095 2132201.224 0.05786512 0.053748546 5.46E-07 6.263151485 0.312171618 QIFILLFQR ddPTM_HeLa_A486_30min_R1 2 QIFILLFQR 9 0 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 ; ; 275.67 2.64E-42 136898000 122360 152047 125608 57594 173583 135612 145800 147144 105677 124488 FALSE FALSE TRUE 113783.1959 139998.242 174246.7815 134081.7426 151810.6015 118881.5702 109319.2979 113642.5233 114837.1674 93315.39452 1.219340029 1.500269518 1.867288698 1.436866268 1.626854843 1.27397597 1.171503356 1.217832534 1.230634753 1 16.50982749 -6.413468793 3.964955303 1.177342041 1.541290128 0.54164404 0.163482197 0.197548059 5.432301873 0.061741802 0.05319834 3.86E-07 6.413468793 0.363948087 QIISILESMSNDTSLPDKCNS(ph)FLHNK ddPTM_HeLa_A485_30min_R1 2 QIISILESMSNDTSLPDKCNSFLHNK 26 1 Q9NYL2;Q9NYL2-3;Q9NYL2-2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 QIISILESMSNDTS(0.026)LPDKCNS(0.974)FLHNK;QIISILESMS(0.001)NDT(0.012)S(0.043)LPDKCNS(0.944)FLHNK ; 146.1 3.43E-09 50127000 18807 14687.6 8734.7 27630 16535.8 21515 29521 22753.8 13791.5 31003 TRUE FALSE FALSE 22990.55227 16405.18705 11966.02901 29139.35694 14889.43769 22641.49213 23213.59719 17173.39487 16559.32755 23274.52267 0.987799088 0.704856005 0.514125646 1.251985158 0.639731173 0.972801567 0.99738231 0.737862388 0.711478718 1 14.50646396 QIISILESMSNDTSLPDKCNS(ph)FLHNK ddPTM_HeLa_A486_30min_R1 2 QIISILESMSNDTSLPDKCNSFLHNK 26 1 Q9NYL2;Q9NYL2-3;Q9NYL2-2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 QIISILESMSNDTSLPDKCNS(1)FLHNK;QIISILESMSNDTSLPDKCNS(1)FLHNK ; 176.11 1.06E-14 57288000 44576 41497 22138 37914 40264 55088 65674 60337 35581 64643 TRUE FALSE FALSE 41451.45259 38208.62659 30710.42648 88265.70807 35213.71367 48291.80265 49241.67057 46599.58225 38665.18973 48455.97204 0.855445693 0.788522549 0.633780011 1.82156511 0.726715659 0.996611988 1.016214689 0.961689143 0.797944775 1 15.56438686 QIKPLTQKEPVRADS(ph)PVHMEQQSR ddPTM_HeLa_A485_30min_R1 2 QIKPLTQKEPVRADSPVHMEQQSR 24 3 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 QIKPLT(0.003)QKEPVRADS(0.997)PVHMEQQSR;QIKPLT(0.003)QKEPVRADS(0.996)PVHMEQQSR ; 135.84 1.91E-06 1424870000 237627 361920 204852 179600 409000 471550 526550 811810 316900 304170 TRUE FALSE FALSE 290486.3063 404243.3957 280635.2794 189411.0932 368278.5239 496239.6288 414048.291 612712.3246 380498.9232 228346.0168 1.272132137 1.770310695 1.22899135 0.829491558 1.612809056 2.173191526 1.813249457 2.68326259 1.66632608 1 17.8008621 -6.001682178 24.50448646 1.960589032 1.296523688 0.263845989 0.452353459 59.60421998 868290.9533 0.137561317 0.153677428 9.96E-07 6.001682178 -0.664065344 QIKPLTQKEPVRADS(ph)PVHMEQQSR ddPTM_HeLa_A486_30min_R1 1 QIKPLTQKEPVRADSPVHMEQQSR 24 3 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 QIKPLT(0.001)QKEPVRADS(0.999)PVHMEQQSR 137.5 1.35E-06 511500000 200080 145810 113910 62185 198600 144280 218750 226090 108990 212500 TRUE FALSE FALSE 186055.4252 134255.4846 158019.0026 144769.8227 173689.7361 126480.2005 164016.4363 174614.2425 118437.341 159288.6169 1.168039681 0.842844186 0.992029473 0.90885228 1.090408967 0.794031633 1.029680837 1.096212937 0.743539264 1 17.28128365 -4.242011793 24.10249571 0.950125468 1.168040007 0.25354366 0.114825686 3844.410579 4769381.884 0.026774145 0.926256738 5.73E-05 4.242011793 0.217914539 QIKPYTLMSMVANLLYEK ddPTM_HeLa_A485_30min_R1 1 QIKPYTLMSMVANLLYEK 18 1 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 137.05 6.97E-07 7281900 13577 10872 9425.8 15126 16336 11098 20123 14584 8299.3 21228 FALSE FALSE TRUE 16597.15681 12143.38583 12912.79566 15952.29508 14709.53048 11679.07412 15823.55666 11007.25113 9964.893384 15936.25027 1.041471897 0.761997686 0.810278167 1.001006812 0.92302331 0.732862117 0.992928474 0.690705213 0.625297245 1 13.96002459 -7.275670573 24.8395282 0.743500919 0.885379753 0.138870371 0.133189504 1269.74064 2216228.871 0.06944215 0.033618848 5.30E-08 7.275670573 0.141878834 QIKPYTLMSMVANLLYEK ddPTM_HeLa_A486_30min_R1 2 QIKPYTLMSMVANLLYEK 18 1 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 ; ; 155.28 7.90E-10 8431900 29066.9 37961.1 27194 14910.5 43305.2 40023 44418 38524.7 35759.8 36961.7 FALSE FALSE TRUE 27029.46041 34952.92418 37724.24508 34712.39753 37873.45801 35085.36918 33304.14659 29753.4668 38859.48826 27706.24974 0.975572684 1.261553783 1.361578901 1.25287247 1.366964435 1.266334113 1.202044553 1.073890082 1.402553165 1 14.75792382 -6.896474531 4.831867705 1.171535594 1.258604326 0.069609744 0.139647226 0.609513491 23.48847339 0.059482633 0.03942546 1.27E-07 6.896474531 0.087068733 QIKPYTLMSMVANLLYEKR ddPTM_HeLa_A485_30min_R1 3 QIKPYTLMSMVANLLYEKR 19 2 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 ;; ;; 273.42 1.84E-58 89982200 121788.4 186765 112299.2 84213 190626.9 165886.2 252981.9 329651 86332 151757.6 FALSE FALSE TRUE 148879.8094 208605.5421 153843.3472 88813.34295 171647.4165 174571.7449 198930.2504 248803.5754 103658.0405 113927.2232 1.306797491 1.831042101 1.350365109 0.779562079 1.506640921 1.532309311 1.746116905 2.183881678 0.909861907 1 16.797753 -5.979248886 24.99983315 1.560303484 1.329431999 0.015505894 0.414257703 758.2897844 913542.6244 0.129664375 0.147012287 1.05E-06 5.979248886 -0.230871486 QIKPYTLMSMVANLLYEKR ddPTM_HeLa_A486_30min_R1 2 QIKPYTLMSMVANLLYEKR 19 2 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 0 ; ; 195.93 1.50E-22 11808300 20184.4 11836.8 8405.3 7248.9 14063.4 9975.8 18697.3 16134.2 9986.2 19719.8 FALSE FALSE TRUE 18769.57779 10898.80886 11660.05726 16875.80554 12299.43724 8745.087223 14019.03778 12460.79487 10851.81186 14781.83373 1.2697733 0.737311017 0.788809932 1.141658461 0.832064375 0.591610445 0.948396393 0.842980316 0.734131641 1 13.85153763 -4.252477646 24.70292525 0.84363774 1.26977356 0.429580222 0.14635405 995.4925775 2743996.84 0.036808585 0.432116512 5.59E-05 4.252477646 0.42613582 QILIACS(ph)PVS(ph)SVR ddPTM_HeLa_A486_30min_R1 1 QILIACSPVSSVR 13 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 2 0 QILIACS(1)PVS(0.571)S(0.429)VR 103.76 0.00030487 0 56856 90379 103840 31333 106450 92671 103530 97963 73926 64983 TRUE FALSE FALSE 52870.688 83217.03889 144049.6289 72944.80748 93098.04839 81238.19423 77625.69897 75658.96342 80333.9652 48710.83383 1.085398952 1.708388716 2.957240055 1.497506853 1.911239063 1.667764393 1.593602344 1.553226612 1.649201192 1 15.57195506 -8.362914612 0.475282903 0.966477862 1.866815862 0.208536428 0.449810372 2.668423022 1.239219486 0.725086241 0.269930103 4.34E-09 8.362914612 0.900338 QILIACS(ph)PVSSVR ddPTM_HeLa_A485_30min_R1 8 QILIACSPVSSVR 13 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 QILIACS(0.998)PVS(0.002)SVR;QILIACS(0.95)PVS(0.043)S(0.007)VR;QILIACS(0.999)PVSS(0.001)VR;QILIACS(1)PVSSVR;QILIACS(0.974)PVS(0.024)S(0.003)VR;QILIACS(1)PVSSVR;QILIACS(0.67)PVS(0.268)S(0.062)VR;QILIACS(0.959)PVS(0.041)SVR ;;;;;;; 190.34 1.84E-17 6073925000 2682818 3353629 3596825 2728065 4233165 2848606 3564948 3554110 3069750 3497676 TRUE FALSE FALSE 3279601.608 3745806.739 4927440.244 2877092.283 3811696.229 2997754.605 2803267.737 2682458.95 3685820.668 2625769.743 1.249005789 1.426555679 1.876569816 1.095713853 1.451649079 1.141666977 1.067598461 1.021589557 1.403710541 1 21.32430898 -5.982983305 1.368095702 1.121582993 1.473684543 0.310589755 0.214286125 0.508367969 1.967657652 0.089508624 0.102340816 1.04E-06 5.982983305 0.352101551 QILIACS(ph)PVSSVR ddPTM_HeLa_A486_30min_R1 8 QILIACSPVSSVR 13 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 QILIACS(0.996)PVS(0.004)S(0.001)VR;QILIACS(0.995)PVS(0.002)S(0.003)VR;QILIACS(1)PVSSVR;QILIACS(0.999)PVS(0.001)SVR;QILIACS(0.99)PVS(0.01)SVR;QILIACS(0.973)PVS(0.027)SVR;QILIACS(0.977)PVS(0.017)S(0.006)VR;QILIACS(0.945)PVS(0.034)S(0.021)VR ;;;;;;; 178.22 1.18E-13 6836635000 4290788 5303920 4771858 1626221 5933210 4473767 4922969 5223618 4309075 4665960 TRUE FALSE FALSE 3990025.919 4883618.063 6619649.212 3785924.673 5189011.477 3921839.113 3691190.086 4034314.212 4682589.091 3497573.246 1.140798387 1.396287574 1.892640625 1.082443285 1.483603376 1.121302926 1.05535748 1.153460965 1.338810873 1 21.73792284 -6.26915059 24.37782482 1.138475929 1.40881618 0.265708339 0.22021054 603.5019792 1907872.953 0.077320205 0.069519728 5.38E-07 6.26915059 0.270340252 QIMALRVMT(ph)S(ph)KMK ddPTM_HeLa_A485_30min_R1 1 QIMALRVMTSKMK 13 2 O75487-2;O75487 O75487-2 GPC4 Glypican-4;Secreted glypican-4 2 0 QIMALRVMT(1)S(1)KMK 40.493 0.028923 2968300000 743630 1285400 950050 154530 1162800 1260600 966160 1843000 1248700 217980 TRUE FALSE FALSE 909047.928 1435716.349 1301513.03 162971.5826 1047027.549 1326603.067 759732.0232 1391001.36 1499302.636 163641.5976 5.55511521 8.773541504 7.953436344 0.995905595 6.398297037 8.106759443 4.642658311 8.500291982 9.162111945 1 17.32018 QINIHNLSAFYDSELFR ddPTM_HeLa_A485_30min_R1 1 QINIHNLSAFYDSELFR 17 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 127.22 4.71E-06 18306000 6573.6 9356.6 9760 7076.2 11596 8232.2 10199 11966 7781.7 9805.8 FALSE FALSE TRUE 8035.874641 10450.77298 13370.63015 7462.754888 10441.46152 8663.225263 8019.900332 9031.319738 9343.415812 7361.394522 1.09162396 1.419672991 1.816317561 1.01376918 1.418408087 1.176845669 1.089453949 1.226849031 1.269245356 1 12.84576338 -5.299670914 24.99999501 1.187302965 1.440252452 0.277057787 0.199989682 743.8880836 486434.5973 0.056182525 0.083333796 5.02E-06 5.299670914 0.252949487 QINIHNLSAFYDSELFR ddPTM_HeLa_A486_30min_R1 1 QINIHNLSAFYDSELFR 17 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 205.31 6.25E-19 18691000 19637 22741 18685 4824.2 28667 18846 21475 22870 21141 21838 FALSE FALSE TRUE 18260.54771 20938.92034 25920.3324 11230.9814 25071.31755 16520.97213 16101.72786 17663.00025 22973.5189 16369.62266 1.115514272 1.279132743 1.583441045 0.686086762 1.531575778 1.009245752 0.983634638 1.079010837 1.403423853 1 13.99873345 -5.225077726 24.99997276 1.111766254 1.321339528 0.152280193 0.244098938 1208.041446 830571.5141 0.063855804 0.110597931 5.96E-06 5.225077726 0.209573274 QINWTVLYR ddPTM_HeLa_A485_30min_R1 2 QINWTVLYR 9 0 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 0 ; ; 226.46 3.74E-17 138926000 63648 102890 95009 63793 108481 87730 99905 120646 81581 103517 FALSE FALSE TRUE 77806.27802 114922.0905 130156.7828 67277.85006 97680.25074 92323.40714 78559.4806 91057.37933 97953.55839 77712.11699 1.001211665 1.478818168 1.674858282 0.865731789 1.256950068 1.188018172 1.01090388 1.171726918 1.260466993 1 16.24585194 -5.264729755 24.99762913 1.120374697 1.394348243 0.297929806 0.194212723 358.1569531 2720991.982 0.053911171 0.083827129 5.44E-06 5.264729755 0.273973546 QINWTVLYR ddPTM_HeLa_A486_30min_R1 2 QINWTVLYR 9 0 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 0 ; ; 241.94 7.73E-24 123787000 92589 91946 71705 25052 101377 69348 93362 92933 71430 85097 FALSE FALSE TRUE 86098.98923 84659.8641 99471.09633 58322.32206 88661.35136 60792.54884 70001.84012 71774.18461 77621.60991 63788.15731 1.349764484 1.327203476 1.559397552 0.914312696 1.389934356 0.953038172 1.097411229 1.125196081 1.216865531 1 15.96100098 -5.256595715 24.99960546 1.110660585 1.403629996 0.507203697 0.140822348 340.1205044 1755458.92 0.03667907 0.060992702 5.54E-06 5.256595715 0.292969412 QIQELVEAIVLPMNHK ddPTM_HeLa_A485_30min_R1 1 QIQELVEAIVLPMNHK 16 0 E9PM69;P17980;E9PN50;E9PMD8;R4GNH3 E9PM69 PSMC3 26S protease regulatory subunit 6A 0 0 130.06 7.40E-06 3131000 10781 12347 10249 10619 14999 12269 15873 16705 10863 14781 FALSE FALSE TRUE 13179.19626 13790.87425 14040.5316 11199.08908 13505.6469 12911.38587 12481.60388 12608.07256 13043.10446 11096.36872 1.187703526 1.242827684 1.265326698 1.009257115 1.217123118 1.163568568 1.124836799 1.136234102 1.175438991 1 13.43780001 -14 0.107511511 0.478181802 1.266425604 0.398557931 0.065694498 181.5909665 1.303519195 21.10529382 0.899933873 1.00E-14 14 0.788243802 QIQELVEAIVLPMNHK ddPTM_HeLa_A486_30min_R1 1 QIQELVEAIVLPMNHK 16 0 E9PM69;P17980;E9PN50;E9PMD8;R4GNH3 E9PM69 PSMC3 26S protease regulatory subunit 6A 0 0 127.88 9.47E-06 3415600 15799 15240 11488 5434.3 16350 14358 18824 17016 12569 17738 FALSE FALSE TRUE 14691.57169 14032.3269 15936.46126 12651.32503 14299.23054 12586.65594 14114.0361 13141.82826 13658.49104 13296.28934 1.104937724 1.055356614 1.198564565 0.951492909 1.075430157 0.946629215 1.061501877 0.988383143 1.02724081 1 13.69873606 -5.270874569 24.99990302 1.009332448 1.113193335 0.50431322 0.050907602 529.6832211 1403471.079 0.013312982 0.020029102 5.36E-06 5.270874569 0.103860887 QIQT(ph)SPVPVRK ddPTM_HeLa_A485_30min_R1 1 QIQTSPVPVRK 11 1 Q9NRM7 Q9NRM7 LATS2 Serine/threonine-protein kinase LATS2 1 0 QIQT(0.5)S(0.5)PVPVRK 85.45 0.0031708 570190000 540230 500420 324170 907370 563260 498570 765690 759210 448330 1147800 TRUE FALSE FALSE 660402.2997 558939.7659 444093.9728 956937.3255 507179.8567 524674.3543 602094.0764 573012.5571 538305.7187 861674.5837 0.766417291 0.648666882 0.515384788 1.110555358 0.588597907 0.608900813 0.698748794 0.664998792 0.624720433 1 19.7167836 -10.12642638 4.654125806 1.000026055 0.691671368 0.265227971 0.153849323 4.16E-05 7.82E-06 0.146634507 0.035561038 7.47E-11 10.12642638 -0.308354687 QIQTS(ph)PVPVRK ddPTM_HeLa_A485_30min_R1 1 QIQTSPVPVRK 11 1 Q9NRM7 Q9NRM7 LATS2 Serine/threonine-protein kinase LATS2 1 0 QIQT(0.403)S(0.597)PVPVRK 58.268 0.019602 569390000 327840 372280 277970 411180 398290 360240 452100 561930 311570 532830 TRUE FALSE FALSE 400766.877 415814.9076 380802.6703 433641.7222 358634.8491 379101.6094 355505.1417 424115.7864 374099.2411 400005.287 1.00190395 1.039523529 0.951994093 1.084089977 0.896575272 0.947741497 0.888751107 1.060275452 0.935235741 1 18.60965954 -5.767413374 24.99957986 0.954125274 1.016003732 0.244338577 0.055534381 220.3004775 921897.7234 0.016715885 0.019448838 1.71E-06 5.767413374 0.061878458 QIS(ph)DGEREELNLTANR ddPTM_HeLa_A486_30min_R1 2 QISDGEREELNLTANR 16 1 O95816-2;O95816 O95816-2 BAG2 BAG family molecular chaperone regulator 2 1 0 QIS(1)DGEREELNLTANR;QIS(1)DGEREELNLTANR ; 91.276 0.00048013 452420000 383790 552970 648280 73347 624040 368850 338950 402420 489120 260600 TRUE FALSE FALSE 356888.3029 509150.6433 899311.3775 170755.5228 545767.0843 323345.0372 254141.125 310797.7508 531517.3154 195344.0638 1.82697286 2.606430078 4.60373026 0.874127012 2.793875963 1.65525909 1.300992311 1.591027363 2.720928935 1 17.57565789 -5.286467661 24.98432493 1.756241194 2.971783769 0.316217739 0.878032271 935.2941487 933649.3948 0.244912474 0.36343156 5.17E-06 5.286467661 1.215542575 QIS(ph)LPDLSQEEPQLK ddPTM_HeLa_A486_30min_R1 1 QISLPDLSQEEPQLK 15 0 H0YBZ4;Q15390-2;Q15390 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 0 QIS(1)LPDLSQEEPQLK 63.709 0.020139 22674000 44638 42626 33041 18931 49322 48676 47702 47701 34203 54091 TRUE FALSE FALSE 41509.10671 39248.16052 45835.36007 44072.32472 43135.57485 42670.85002 35766.45506 36840.52361 37167.74358 40546.26153 1.02374683 0.967984693 1.130446022 1.086963953 1.063860717 1.052399122 0.882114743 0.908604695 0.916674983 1 15.30728128 -6.750823083 24.98191004 0.919232333 1.055702728 0.623411607 0.048350332 132.7130927 312296.4042 0.019293625 0.01478703 1.77E-07 6.750823083 0.136470395 QIS(ph)PQEFIHELK ddPTM_HeLa_A486_30min_R1 1 QISPQEFIHELK 12 0 Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4 Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 1 0 QIS(1)PQEFIHELK 92.211 0.0014159 6735000 25593 28048 15372 10427 28239 27780 30191 29062 20484 31713 TRUE FALSE FALSE 23799.06286 25825.37433 21324.45008 24274.58295 24697.0013 24352.78605 22636.89247 22445.21702 22259.56961 23771.85838 1.001144399 1.086384325 0.897045983 1.021147887 1.038917568 1.024437621 0.952255903 0.944192779 0.936383233 1 14.53696707 -6.768613895 24.91735527 0.95355736 1.011396779 0.231360573 0.047294978 233.1518137 809735.6871 0.019535244 0.013477798 1.70E-07 6.768613895 0.057839418 QIS(ph)QDVK ddPTM_HeLa_A485_30min_R1 2 QISQDVK 7 0 A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433;E9PIJ1;E9PJF6 A0A590UK85 AMPD2 AMP deaminase 2 1 0 QIS(1)QDVK;QIS(1)QDVK ; 79.201 0.013397 846420000 1205610 1267900 798090 1385760 1252490 1132310 1555500 1643320 1001520 1831820 TRUE FALSE FALSE 1473793.785 1416169.876 1093336.702 1461460.56 1127787.698 1191596.001 1223154.718 1240293.193 1202515.878 1375180.986 1.071708961 1.029806178 0.795049316 1.062740523 0.820101288 0.866501219 0.889449992 0.901912698 0.874441902 1 20.39119007 -4.60524528 7.564911149 0.899180371 1.061354717 0.394551761 0.074791464 0.187662289 14.39958485 0.017889059 0.047904962 2.48E-05 4.60524528 0.162174347 QIS(ph)QDVK ddPTM_HeLa_A486_30min_R1 2 QISQDVK 7 0 A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433;E9PIJ1;E9PJF6 A0A590UK85 AMPD2 AMP deaminase 2 1 0 QIS(1)QDVK;QIS(1)QDVK ; 78.342 0.014121 1241320000 2206450 1890250 914110 898410 1655770 2305300 2810100 2714900 1519430 3067000 TRUE FALSE FALSE 2051789.249 1740459.706 1268077.873 2091543.883 1448087.887 2020895.525 2106983.258 2096776.536 1651135.416 2299003.237 0.892469056 0.757049698 0.551577245 0.909761174 0.629876402 0.879031178 0.916476856 0.912037226 0.718196212 1 21.13257707 -6.369926908 11.38256123 0.881912628 0.746728503 0.247472056 0.119380464 0.854293277 85.08278849 0.04089213 0.036053123 4.27E-07 6.369926908 -0.135184125 QIS(ph)QDVKLEPDILLR ddPTM_HeLa_A485_30min_R1 1 QISQDVKLEPDILLR 15 1 A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433;E9PIJ1;E9PJF6 A0A590UK85 AMPD2 AMP deaminase 2 1 0 QIS(1)QDVKLEPDILLR 70.414 0.0047025 35214000 18861 19569 26400 33848 81026 43355 78070 119160 33812 58566 TRUE FALSE FALSE 23056.56438 21857.42432 36166.4586 35697.03053 72958.76694 45625.00076 61389.70673 89935.82316 40597.75826 43966.57403 0.524411212 0.49713731 0.822589874 0.811912943 1.65941442 1.037720172 1.396281336 2.045549947 0.923377797 1 15.4241195 -5.614711981 4.882614788 1.381711693 0.633396194 0.513468134 0.326169631 0.163082704 6.618425021 0.096603882 0.12616754 2.43E-06 5.614711981 -0.748315499 QIS(ph)QDVKLEPDILLR ddPTM_HeLa_A486_30min_R1 2 QISQDVKLEPDILLR 15 1 A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433;E9PIJ1;E9PJF6 A0A590UK85 AMPD2 AMP deaminase 2 1 0 QIS(1)QDVKLEPDILLR;QIS(1)QDVKLEPDILLR ; 119.31 4.32E-05 34450000 58015 41817 43764 60481 130835 72513 127813 146453 41984 62191 TRUE FALSE FALSE 53948.44809 38503.26863 60710.59284 140802.8245 114424.4543 63567.08332 95832.83553 113108.8489 45623.20692 46617.9688 1.157245789 0.825931923 1.302300259 3.020355201 2.454513941 1.363574711 2.055705943 2.426292948 0.978661407 1 15.50859853 -5.015137319 24.16352478 1.981540636 1.009720316 0.260299937 0.625520356 509.2511496 812917.1305 0.166559096 0.301954459 9.66E-06 5.015137319 -0.971820321 QISGQYS(ph)GSPQLLK ddPTM_HeLa_A486_30min_R1 1 QISGQYSGSPQLLK 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 QISGQYS(0.64)GS(0.36)PQLLK 180.1 2.64E-17 286800000 285170 275170 194620 106110 276890 270420 290350 299150 221290 315630 TRUE FALSE FALSE 265181.0556 253364.527 269982.0761 247029.4425 242159.8743 237058.3298 217701.359 231040.0754 240471.5954 236594.1936 1.120826558 1.07088227 1.141118774 1.044106107 1.023524164 1.00196174 0.920146668 0.976524706 1.016388406 1 17.85205514 -5.738837796 1.541621735 0.977772369 1.107646405 0.757496202 0.030865038 0.185125123 0.913809859 0.011485454 0.015975307 1.82E-06 5.738837796 0.129874036 QISGQYSGS(ph)PQLLK ddPTM_HeLa_A485_30min_R1 2 QISGQYSGSPQLLK 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 QISGQYS(0.277)GS(0.723)PQLLK;QISGQYS(0.045)GS(0.955)PQLLK ; 216.34 1.39E-27 593620000 530540 491660 367440 564970 593230 444650 591520 631890 452760 744520 TRUE FALSE FALSE 648556.7927 549155.3601 503371.3465 595832.8805 534165.9382 467931.1864 465136.9197 476917.9867 543624.779 558924.8659 1.160364894 0.982520896 0.900606463 1.066033946 0.955702583 0.837198727 0.832199367 0.853277454 0.972625861 1 19.09229483 -6.012878918 6.017864689 0.886400949 1.01504886 0.352093892 0.080431829 0.183239156 25.95494932 0.02626911 0.027866353 9.71E-07 6.012878918 0.128647911 QISGQYSGS(ph)PQLLK ddPTM_HeLa_A486_30min_R1 1 QISGQYSGSPQLLK 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 QISGQYS(0.124)GS(0.876)PQLLK 268.17 2.70E-42 320050000 998790 1013700 625340 363600 991170 928980 1093100 1017200 757720 1047500 TRUE FALSE FALSE 928779.9788 933370.7202 867488.3952 846479.1753 866848.2163 814371.8928 819594.8184 785605.7653 823399.7797 785199.1819 1.182859076 1.188705671 1.104800432 1.078043883 1.103985124 1.037153262 1.043804983 1.000517809 1.048650837 1 19.58269914 -4.192870431 0.351007859 1.003769724 1.362477772 0.884207724 0.021635132 2.048784062 0.19495692 0.020219834 0.317648658 6.41E-05 4.192870431 0.358708048 QISRPSAAGINLMIGSTR ddPTM_HeLa_A485_30min_R1 2 QISRPSAAGINLMIGSTR 18 1 Q08211;Q08211-2 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 235.56 8.34E-37 81182000 34482 53674 61546 37732 61267 44931 47125 60582 46780 51243 FALSE FALSE TRUE 42152.40194 59950.7074 84314.42654 39793.20362 55167.04236 47283.51768 37056.35877 45724.16951 56168.31691 38469.06316 1.095748076 1.558413501 2.191746292 1.034420918 1.434062538 1.22913099 0.963276871 1.188595868 1.460090584 1 15.23141108 QISRPSAAGINLMIGSTR ddPTM_HeLa_A486_30min_R1 1 QISRPSAAGINLMIGSTR 18 1 Q08211;Q08211-2 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 97.488 0.00051449 40480000 11759 16652 14938 5450.3 22476 15251 16989 19647 13791 14032 FALSE FALSE TRUE 10934.75482 15332.43487 20722.39365 12688.57384 19656.8505 13369.48668 12738.17251 15173.80699 14986.41498 10518.29587 1.039593767 1.457691918 1.970128423 1.206333612 1.868824641 1.271069653 1.211049078 1.442610779 1.424794964 1 13.36061336 QIT(ph)MEELVR ddPTM_HeLa_A485_30min_R1 14 QITMEELVR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR ;;;;;;;;;;;;; 228.73 9.06E-12 3734581000 2338352 2739440 2670570 2405443 2861260 2310566 2570822 2801680 2241837 2892330 TRUE FALSE FALSE 2858510.335 3059793.678 3658524.975 2536846.26 2576382.908 2431543.663 2021544.878 2114563.587 2691753.123 2171325.36 1.316481808 1.40918249 1.684927115 1.168339995 1.186548527 1.119843072 0.931018868 0.973858467 1.239682072 1 21.05014449 -5.443326803 5.403986712 1.07706734 1.463755089 0.671976957 0.123511862 0.136614662 6.855838003 0.036883617 0.05474717 3.60E-06 5.443326803 0.38668775 QIT(ph)MEELVR ddPTM_HeLa_A486_30min_R1 14 QITMEELVR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR;QIT(1)MEELVR ;;;;;;;;;;;;; 200.13 4.47E-09 2997760000 2350434 2696952 1984761 826796 2590557 2855316 2867551 3234220 2714358 2685489 TRUE FALSE FALSE 2185680.714 2483235.701 2753313.613 1924822.872 2265625.185 2503056.143 2150059.41 2497858.709 2949640.737 2013025.075 1.085769244 1.233584088 1.367749288 0.95618425 1.125482843 1.243430186 1.068073834 1.240848283 1.465277693 1 20.94093371 -7.506185675 24.20973717 1.272780164 1.159863346 0.044440565 0.149559851 1118.829256 1622640.835 0.08241311 0.037930648 3.12E-08 7.506185675 -0.112916817 QIT(ph)QEEDDSDEEVAPENFFSLPEK ddPTM_HeLa_A486_30min_R1 5 QITQEEDDSDEEVAPENFFSLPEK 24 0 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 0 QIT(0.758)QEEDDS(0.242)DEEVAPENFFSLPEK;QIT(0.829)QEEDDS(0.171)DEEVAPENFFSLPEK;QIT(0.688)QEEDDS(0.312)DEEVAPENFFSLPEK;QIT(0.538)QEEDDS(0.462)DEEVAPENFFSLPEK;QIT(0.852)QEEDDS(0.148)DEEVAPENFFSLPEK ;;;; 114.04 0.00024585 943820000 142146.3 158766.3 105112.6 59097.9 152630.3 147202 168674 168975 130322.3 171627 TRUE FALSE FALSE 132182.5784 146185.0802 145815.0137 137582.8978 133485.9846 129041.7139 126469.9811 130503.0812 141618.7419 128650.4821 1.027454979 1.136296404 1.133419878 1.069431654 1.037586353 1.003041044 0.983050969 1.01440025 1.100802264 1 16.97309734 -5.682714442 2.72291942 1.019458179 1.102558092 0.416370446 0.040768683 0.253357109 3.814508468 0.013237264 0.017470803 2.08E-06 5.682714442 0.083099913 QIT(ph)TSPITVRK ddPTM_HeLa_A485_30min_R1 1 QITTSPITVRK 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.44)T(0.28)S(0.28)PITVRK 71.879 0.010715 379720000 283730 582630 374030 248930 551780 566050 638830 966270 341850 347380 TRUE FALSE FALSE 346844.7596 650763.5103 512399.2617 262528.4156 496842.8458 595687.5027 502338.7517 729290.7674 410456.1594 260784.5591 1.33000497 2.495406602 1.964837426 1.006686962 1.90518506 2.284213087 1.926259567 2.796525876 1.573928153 1 17.99249893 -5.995498238 24.99070639 2.036386932 1.735182838 0.010231886 0.571391267 422.1790088 2343619.304 0.174389136 0.196994919 1.01E-06 5.995498238 -0.301204094 QITQEEDDS(ph)DEEVAPENFFSLPEK ddPTM_HeLa_A485_30min_R1 4 QITQEEDDSDEEVAPENFFSLPEK 24 0 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 0 QIT(0.029)QEEDDS(0.971)DEEVAPENFFSLPEK;QIT(0.414)QEEDDS(0.586)DEEVAPENFFSLPEK;QIT(0.419)QEEDDS(0.581)DEEVAPENFFSLPEK;QIT(0.13)QEEDDS(0.87)DEEVAPENFFSLPEK ;;; 122.77 6.97E-06 1050580000 115594.1 132760.3 115521.1 122184 158016.6 138900.9 184901.9 184820 119023.8 167544 TRUE FALSE FALSE 141307.6088 148285.4622 158257.1621 128858.6025 142283.9125 146173.5363 145396.0986 139492.6052 142910.7849 125778.3642 1.123465149 1.178942524 1.258222454 1.024489413 1.131227245 1.162151673 1.155970659 1.109034977 1.13621119 1 16.94052425 -14 0.209462525 0.312815829 1.163504536 0.384182446 0.054964462 158.344491 1.578036638 45.63185758 0.121372894 1.00E-14 14 0.850688707 QITT(ph)SPITVR ddPTM_HeLa_A485_30min_R1 2 QITTSPITVR 10 0 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.004)T(0.961)S(0.034)PIT(0.002)VR;QIT(0.008)T(0.496)S(0.496)PITVR ; 162.31 2.63E-06 1660720000 1040860 1302770 1284610 1145020 1490570 1146900 1396190 1345980 1183210 1458790 TRUE FALSE FALSE 1272395.716 1455117.619 1759840.696 1207569.543 1342163.617 1206949.911 1097882.601 1015876.295 1420669.394 1095140.5 1.161856142 1.328704051 1.606954264 1.102661753 1.225562946 1.102095951 1.00250388 0.927621885 1.297248521 1 20.06268454 -5.767141112 1.614833232 1.061797667 1.350021305 0.375169934 0.149980533 0.38530415 2.08398395 0.054961012 0.07379854 1.71E-06 5.767141112 0.288223639 QITT(ph)SPITVR ddPTM_HeLa_A486_30min_R1 4 QITTSPITVR 10 0 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.221)T(0.714)S(0.065)PITVR;QIT(0.003)T(0.498)S(0.498)PIT(0.001)VR;QIT(0.011)T(0.904)S(0.085)PITVR;QIT(0.011)T(0.869)S(0.119)PITVR ;;; 198.55 5.13E-13 3058150000 3692060 4121890 3534010 1266880 4461460 3681470 3873020 4070160 3424180 3667450 TRUE FALSE FALSE 3433265.66 3795256.425 4902473.316 2949360.665 3901862.085 3227287.662 2903949.431 3143473.419 3720990.679 2749096.649 1.248870483 1.380546743 1.783303369 1.072847208 1.419325176 1.17394478 1.056328606 1.143456859 1.353532143 1 21.3905262 -5.888240172 1.316282185 1.150623953 1.431777113 0.276108711 0.187880034 0.581172345 2.107352714 0.077370806 0.097062239 1.29E-06 5.888240172 0.28115316 QITTS(ph)PITVRK ddPTM_HeLa_A485_30min_R1 1 QITTSPITVRK 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.078)T(0.047)S(0.875)PITVRK 111.83 0.00028959 541210000 235320 471930 290080 195090 452890 517460 583670 983380 375400 323120 TRUE FALSE FALSE 287666.1222 527118.1083 397392.6632 205747.2727 407798.6814 544553.4055 458964.1364 742204.5131 450739.3366 242572.1306 1.185899309 2.17303656 1.638245343 0.848190071 1.681143998 2.244913314 1.892072825 3.059727065 1.85816621 1 17.88805428 -6.131954122 4.903051333 2.129316117 1.497501793 0.153407121 0.57325611 0.366715054 13.07996959 0.188600586 0.189418791 7.38E-07 6.131954122 -0.631814325 QITTS(ph)PITVRK ddPTM_HeLa_A486_30min_R1 1 QITTSPITVRK 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.168)T(0.168)S(0.664)PIT(0.001)VRK 61.167 0.016225 388650000 219360 184860 138100 119340 245440 171510 222850 253910 130920 296040 TRUE FALSE FALSE 203983.9968 170211.0204 191576.0184 277829.5511 214654.6266 150350.84 167090.5729 196100.2358 142268.251 221909.6571 0.919220909 0.76702845 0.863306361 1.251993963 0.967306378 0.677531758 0.752966658 0.883694015 0.641108877 1 17.75961293 -6.240214618 23.99667345 0.781410287 0.954938747 0.227686099 0.149300037 754.8069495 853382.84 0.051400814 0.051342347 5.75E-07 6.240214618 0.17352846 QITVNDLPVGR ddPTM_HeLa_A485_30min_R1 2 QITVNDLPVGR 11 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;P32119 Q06830;P32119 PRDX1;PRDX2 Peroxiredoxin-1;Peroxiredoxin-2 0 0 ; ; 251.2 1.69E-35 549170000 729600 996150 1065220 683680 1104980 1015170 1153170 1221980 796640 970230 FALSE FALSE TRUE 891897.0029 1112641.077 1459289.206 721027.7072 994964.3114 1068322.731 906785.809 922287.489 956518.3408 728369.5168 1.224511711 1.527577763 2.003501206 0.989920213 1.366015859 1.466731799 1.244952992 1.266235706 1.313232252 1 19.47431102 -8.141504503 0.227630887 0.886511085 1.562890895 0.219450537 0.243374856 5.704605776 0.948572477 1.342271007 0.745168569 7.22E-09 8.141504503 0.67637981 QITVNDLPVGR ddPTM_HeLa_A486_30min_R1 2 QITVNDLPVGR 11 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;P32119 Q06830;P32119 PRDX1;PRDX2 Peroxiredoxin-1;Peroxiredoxin-2 0 0 ; ; 238.51 4.14E-27 223346000 413830 485210 443210 132864 603890 431950 486040 485950 407090 493490 FALSE FALSE TRUE 384822.654 446760.1925 614832.7816 309314.1066 528144.4851 378660.4007 364427.6512 375309.7932 442376.889 369916.8919 1.040294894 1.207731256 1.662083552 0.83617189 1.427738221 1.023636414 0.985160881 1.014578684 1.195881828 1 18.49684166 -6.313607368 24.95908937 1.041094446 1.234891696 0.169312888 0.211435596 615.3179859 294388.9382 0.072654358 0.06407516 4.86E-07 6.313607368 0.19379725 QKDFLDGVYAFEYYPST(ph)PGR ddPTM_HeLa_A485_30min_R1 4 QKDFLDGVYAFEYYPSTPGR 20 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 QKDFLDGVYAFEYYPS(0.047)T(0.953)PGR;QKDFLDGVYAFEYYPS(0.028)T(0.972)PGR;QKDFLDGVYAFEYYPS(0.17)T(0.83)PGR;QKDFLDGVYAFEYYPS(0.322)T(0.678)PGR ;;; 221.31 2.70E-35 1718090000 2361920 2679200 2195600 2196140 3152200 2703390 3311670 3508020 2239720 2922100 TRUE FALSE FALSE 2887320.955 2992509.134 3007843.807 2316109.567 2838355.9 2844935.32 2604104.651 2647672.595 2689211.26 2193674.247 1.316203151 1.364153834 1.371144239 1.055812899 1.293882127 1.296881396 1.187097243 1.20695796 1.225893618 1 21.06491788 -14 0.085396773 0.172734267 1.485134931 0.525634855 0.081347678 194.0657418 1.159648834 29.74177073 2.373574858 1.00E-14 14 1.312400664 QKDFLDGVYAFEYYPST(ph)PGR ddPTM_HeLa_A486_30min_R1 4 QKDFLDGVYAFEYYPSTPGR 20 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 QKDFLDGVYAFEYYPST(1)PGR;QKDFLDGVYAFEYYPS(0.018)T(0.982)PGR;QKDFLDGVYAFEYYPS(0.21)T(0.79)PGR;QKDFLDGVYAFEYYPS(0.155)T(0.845)PGR ;;; 267.63 3.64E-59 2290330000 1902040 1827880 1371240 769450 2048480 1890380 2073260 2186540 1596510 2110120 TRUE FALSE FALSE 1768716.818 1683032.132 1902220.851 1791318.486 1791540.537 1657164.136 1554508.419 1688712.574 1734896.772 1581732.217 1.11821508 1.064043656 1.202618768 1.132504267 1.132644652 1.047689437 0.982788618 1.067634935 1.096833429 1 20.59307395 -6.281867345 5.773585434 1.039179347 1.130704321 0.526354177 0.043202715 0.15400908 18.47546521 0.015677064 0.014272253 5.23E-07 6.281867345 0.091524974 QKDS(ph)DS(ph)ESEER ddPTM_HeLa_A485_30min_R1 1 QKDSDSESEER 11 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 QKDS(0.999)DS(0.853)ES(0.148)EER 45.723 0.0099394 0 41464 49977 27620 80170 31069 44204 46121 62413 35683 83454 TRUE FALSE FALSE 50687.52375 55821.37541 37837.78736 84549.4841 27975.66127 46518.45309 36266.87158 47106.11389 42844.2508 62650.45366 0.809052781 0.890997146 0.603950732 1.349543047 0.446535654 0.742507841 0.57887644 0.751887834 0.683861781 1 15.93503734 QKDS(ph)DSES(ph)EER ddPTM_HeLa_A485_30min_R1 1 QKDSDSESEER 11 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 QKDS(0.798)DS(0.28)ES(0.922)EER 159.02 5.44E-07 279730000 618620 625620 198420 1386000 254480 629040 699460 848550 471930 1380100 TRUE FALSE FALSE 756229.8848 698780.8168 271823.8149 1461713.67 229143.0777 661975.5617 550014.6569 640441.782 566642.0222 1036066.469 0.729904796 0.674455585 0.262361367 1.410830014 0.221166387 0.638931557 0.530868118 0.618147388 0.546916669 1 19.98268513 -10.1337482 4.876162558 1.000022376 0.625220767 0.118043868 0.306718692 7.03E-05 1.25E-05 0.279871724 0.067874815 7.35E-11 10.1337482 -0.37480161 QKDS(ph)DSES(ph)EER ddPTM_HeLa_A486_30min_R1 2 QKDSDSESEER 11 1 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 0 QKDS(0.969)DS(0.126)ES(0.905)EER;QKDS(0.965)DS(0.25)ES(0.785)EER ; 159.02 1.38E-06 169010000 921980 314650 345110 391580 233740 1264990 558880 452730 887300 1814930 TRUE FALSE FALSE 857353.9631 289715.9881 478745.8344 911618.0294 204422.1497 1108928.395 419042.3128 349653.262 964211.8784 1360459.715 0.630194304 0.212954478 0.351900045 0.67008087 0.150259613 0.815112997 0.308015231 0.25701111 0.70873975 1 20.37566281 -8.000254447 5.068234388 0.999385826 0.42453147 0.443843939 0.205619645 0.126028761 11.37765353 0.187779461 0.048932485 9.99E-09 8.000254447 -0.574854356 QKEDVEVVGGS(ph)DGEGAIGLSSDPK ddPTM_HeLa_A485_30min_R1 3 QKEDVEVVGGSDGEGAIGLSSDPK 24 1 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 1 0 QKEDVEVVGGS(1)DGEGAIGLSSDPK;QKEDVEVVGGS(1)DGEGAIGLSSDPK;QKEDVEVVGGS(1)DGEGAIGLSSDPK ;; 300.2 8.88E-90 3263670000 1454591 993739 649077 2275940 1581284 1376807 2390020 1985039 1122846 3121570 TRUE FALSE FALSE 1778159.75 1109948.132 889197.5926 2400268.839 1423845.813 1448894.486 1879372.702 1498205.073 1348190.893 2343420.047 0.758788315 0.473644549 0.379444391 1.0242589 0.607593084 0.618282022 0.801978589 0.639324168 0.575309106 1 21.16018414 -11.61761158 2.006408109 7.029973424 0.652364549 0.273381178 0.16962187 4552559.673 185252.2708 125345045 0.043222347 2.41E-12 11.61761158 -6.377608874 QKEDVEVVGGS(ph)DGEGAIGLSSDPK ddPTM_HeLa_A486_30min_R1 4 QKEDVEVVGGSDGEGAIGLSSDPK 24 1 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 1 0 QKEDVEVVGGS(1)DGEGAIGLSSDPK;QKEDVEVVGGS(1)DGEGAIGLSSDPK;QKEDVEVVGGS(1)DGEGAIGLSSDPK;QKEDVEVVGGS(1)DGEGAIGLSSDPK ;;; 251.66 2.27E-50 3146980000 2001680 1853100 861912 1222542 1615200 2555390 3260070 2916640 1518080 3466440 TRUE FALSE FALSE 1861372.569 1706253.607 1195667.409 2846139.56 1412606.555 2240131.963 2444366.004 2252584.742 1649668.397 2598420.861 0.716347608 0.656650211 0.460151559 1.095334325 0.543640399 0.86211283 0.940712123 0.866905271 0.634873442 1 21.30920369 -5.243392059 24.97552606 0.835171096 0.615609857 0.304263263 0.163961688 1082.621329 1498227.992 0.043066482 0.074397539 5.71E-06 5.243392059 -0.219561239 QKEEEEAT(ph)AS(ph)ERNDADEK ddPTM_HeLa_A486_30min_R1 1 QKEEEEATASERNDADEK 18 2 A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3;F8W895 A0A0A0MRK1 GPATCH4 G patch domain-containing protein 4 2 0 QKEEEEAT(1)AS(1)ERNDADEK 54.271 0.028952 144970000 47466 93327 42932 277630 82356 183770 220330 225850 75179 286540 TRUE FALSE FALSE 44138.87851 85931.42863 59556.42016 646336.6706 72026.14254 161098.3258 165201.1036 174428.8853 81695.57625 214788.5189 0.205499245 0.40007459 0.277279346 3.009176998 0.335335161 0.750032295 0.769133771 0.812095945 0.380353553 1 17.71255735 -10.66366428 2.656004118 1.025645646 0.799119732 0.006568037 0.778603313 410087644.1 352266493.5 71403215.84 0.198857164 2.17E-11 10.66366428 -0.226525913 QKESELQMTSAAS(ph)PHPGLLLDLK ddPTM_HeLa_A485_30min_R1 1 QKESELQMTSAASPHPGLLLDLK 23 1 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 QKES(0.002)ELQMT(0.103)S(0.103)AAS(0.793)PHPGLLLDLK 125.74 2.16E-06 145380000 121580 117090 68600 109790 138650 117750 173910 206240 94311 169590 TRUE FALSE FALSE 148625.0516 130782.657 93977.99468 115787.5497 124845.5192 123915.2079 136752.7078 155659.3166 113238.3526 127314.3341 1.167386631 1.027242203 0.738157218 0.909462006 0.980608508 0.973301308 1.074134415 1.222637795 0.889439146 1 16.95803533 -6.694282416 4.729260468 1.065156724 0.95493539 0.078684914 0.126563689 0.445442134 19.16261231 0.052402825 0.039278494 2.02E-07 6.694282416 -0.110221334 QKFNDS(ph)EGDDT(ph)EETEDYR ddPTM_HeLa_A485_30min_R1 2 QKFNDSEGDDTEETEDYR 18 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 QKFNDS(1)EGDDT(0.999)EET(0.001)EDYR;QKFNDS(1)EGDDT(1)EETEDYR ; 195.3 9.04E-19 1828950000 1102360 910890 760510 1542290 1257230 1009000 1722640 1384440 869570 2128030 TRUE FALSE FALSE 1347576.179 1017410.662 1041854.296 1626541.397 1132055.767 1061829.68 1354583.891 1044903.919 1044084.723 1597551.284 0.843526084 0.636856339 0.652157027 1.018146593 0.708619359 0.664660778 0.847912618 0.654065963 0.65355318 1 20.60743081 -10.10241879 4.619325543 1.000018105 0.741791544 0.30006073 0.11813585 160371973.7 100411235.9 34187.70361 0.029568767 7.90E-11 10.10241879 -0.258226561 QKFNDS(ph)EGDDT(ph)EETEDYR ddPTM_HeLa_A486_30min_R1 4 QKFNDSEGDDTEETEDYR 18 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 QKFNDS(1)EGDDT(0.988)EET(0.012)EDYR;QKFNDS(1)EGDDT(0.998)EET(0.002)EDYR;QKFNDS(1)EGDDT(0.994)EET(0.006)EDYR;QKFNDS(1)EGDDT(0.997)EET(0.003)EDYR ;;; 140.26 8.18E-07 3956340000 2446360 2380730 1363040 1266790 2184300 2660250 3570840 3135830 1858760 4036610 TRUE FALSE FALSE 2274882.797 2192072.284 1890845.591 2949151.14 1910324.726 2332055.402 2677378.064 2421869.964 2019878.813 3025816.582 0.75182442 0.724456432 0.624904233 0.974662892 0.631341879 0.770719354 0.884844798 0.800402106 0.667548332 1 21.52889311 -14 0.29385506 2.876879494 0.74903978 0.315698738 0.104758322 314.9370929 2.954031736 363.4065148 0.108266676 1.00E-14 14 -2.127839715 QKFNDS(ph)EGDDT(ph)EETEDYRQFR ddPTM_HeLa_A485_30min_R1 3 QKFNDSEGDDTEETEDYRQFR 21 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 QKFNDS(1)EGDDT(1)EETEDYRQFR;QKFNDS(1)EGDDT(1)EETEDYRQFR;QKFNDS(0.999)EGDDT(0.982)EET(0.019)EDYRQFR ;; 172.32 3.62E-13 478750000 163694 288469 168920 172428 415420 389620 600910 838170 208170 266139 TRUE FALSE FALSE 200107.1656 322202.9402 231410.5373 181847.305 374059.3262 410019.9007 472520.6695 632607.4933 249947.8096 199795.4452 1.001560197 1.612664092 1.158237302 0.910167421 1.87221148 2.052198439 2.365022231 3.166275851 1.251018557 1 17.60816417 -5.911003353 4.811504914 2.112099821 1.204896405 0.280913113 0.58829991 0.240014716 9.67358655 0.181766511 0.207125499 1.23E-06 5.911003353 -0.907203416 QKFNDS(ph)EGDDT(ph)EETEDYRQFR ddPTM_HeLa_A486_30min_R1 1 QKFNDSEGDDTEETEDYRQFR 21 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 QKFNDS(1)EGDDT(0.999)EET(0.001)EDYRQFR 106.28 0.00057652 52431000 68089 50425 32188 40903 78546 69155 105260 101570 37196 106090 TRUE FALSE FALSE 63316.31271 46429.13936 44652.05562 95224.25112 68694.02827 60623.35922 78922.83467 78444.72826 40420.17923 79524.37347 0.796187508 0.583835337 0.561488933 1.197422211 0.863810996 0.762324261 0.992435793 0.986423719 0.508274098 1 16.27910948 -5.21647199 24.99995354 0.897378167 0.640836995 0.296383891 0.1794353 557.3696808 309872.9714 0.0478888 0.082945331 6.07E-06 5.21647199 -0.256541172 QKFNDS(ph)EGDDTEETEDYR ddPTM_HeLa_A485_30min_R1 9 QKFNDSEGDDTEETEDYR 18 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR ;;;;;;;; 262.15 3.07E-58 48570330000 6907360 6221360 4962790 9090180 8139500 6759010 10191560 9016590 5986320 11492490 TRUE FALSE FALSE 8443878.402 6948893.933 6798732.54 9586753.516 7329102.8 7112901.312 8014049.949 6805257.165 7187719.514 8627623.747 0.978702671 0.80542385 0.788019128 1.111169633 0.849492632 0.824433415 0.928882643 0.788775376 0.833105352 1 23.04053183 QKFNDS(ph)EGDDTEETEDYR ddPTM_HeLa_A486_30min_R1 8 QKFNDSEGDDTEETEDYR 18 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(0.999)EGDDT(0.001)EETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR;QKFNDS(1)EGDDTEETEDYR ;;;;;;; 292.09 7.57E-79 57045420000 11467270 10139230 5737120 5048510 9613090 11589380 14501370 13573950 8238260 15990810 TRUE FALSE FALSE 10663473.59 9335760.488 7958686.509 11753186.42 8407326.614 10159600.13 10872973.85 10483457.9 8952359.01 11986607.09 0.889615677 0.778849295 0.663964911 0.980526543 0.701393359 0.847579307 0.907093539 0.874597609 0.746863474 1 23.51492001 -6.511708102 24.50869474 0.87249532 0.80076814 0.117501533 0.101252227 1017.672399 2232811.408 0.035828847 0.029751237 3.08E-07 6.511708102 -0.07172718 QKFNDS(ph)EGDDTEETEDYRQFR ddPTM_HeLa_A485_30min_R1 3 QKFNDSEGDDTEETEDYRQFR 21 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(0.775)EGDDT(0.211)EET(0.014)EDYRQFR;QKFNDS(0.981)EGDDT(0.019)EETEDYRQFR;QKFNDS(0.925)EGDDT(0.071)EET(0.003)EDYRQFR ;; 195.49 2.79E-20 3109390000 342853 652600 418260 363830 890320 886160 1355930 2055510 475720 598920 TRUE FALSE FALSE 419119.467 728915.8931 572991.7793 383705.1116 801676.6147 932557.9673 1066224.479 1551392.95 571192.6404 449620.2663 0.932163202 1.621181134 1.274390463 0.853398168 1.783008184 2.074101274 2.371388833 3.450451561 1.270389 1 18.77834754 -6.025219795 3.181906781 2.203662931 1.211333833 0.256516919 0.657593417 0.299720067 6.202653246 0.218320849 0.23288621 9.44E-07 6.025219795 -0.992329098 QKFNDS(ph)EGDDTEETEDYRQFR ddPTM_HeLa_A486_30min_R1 4 QKFNDSEGDDTEETEDYRQFR 21 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(0.997)EGDDT(0.003)EETEDYRQFR;QKFNDS(0.819)EGDDT(0.129)EET(0.052)EDYRQFR;QKFNDS(1)EGDDTEETEDYRQFR;QKFNDS(1)EGDDTEETEDYRQFR ;;; 221.29 6.48E-36 5041510000 1451330 1184530 1016360 920494 2222980 1478780 2443430 2637120 1031833 2181200 TRUE FALSE FALSE 1349599.262 1090663.529 1409921.811 2142956.551 1944153.12 1296343.159 1832057.97 2036705.344 1121273.115 1635013.323 0.825436247 0.667067059 0.862330472 1.31066611 1.189074788 0.792863973 1.120515622 1.245681191 0.685788366 1 20.64087096 -5.01069474 23.21762878 1.059803959 0.75086326 0.309655089 0.185791034 221.8829544 481704.0982 0.049236511 0.092965561 9.76E-06 5.01069474 -0.308940699 QKFNDS(ph)EGDDTEETEDYRQFRK ddPTM_HeLa_A485_30min_R1 1 QKFNDSEGDDTEETEDYRQFRK 22 3 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(0.897)EGDDT(0.102)EET(0.001)EDYRQFRK 128.89 1.19E-05 678150000 21394 77507 25819 16442 66332 157200 188040 635990 24517 15644 TRUE FALSE FALSE 26153.02149 86570.76943 35370.52252 17340.18483 59727.75317 165430.7489 147863.7179 480012.4553 29437.33702 11744.23871 2.226880954 7.371339394 3.011733958 1.476484365 5.085706674 14.08611942 12.59031952 40.87216441 2.506534289 1 13.51966558 -6.076189556 7.416541078 10 3.70002043 0.138430328 10.65243605 0.896272003 77.07637348 3.751429789 3.765042759 8.39E-07 6.076189556 -6.29997957 QKFNDSEGDDT(ph)EETEDYRQFR ddPTM_HeLa_A486_30min_R1 1 QKFNDSEGDDTEETEDYRQFR 21 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(0.155)EGDDT(0.839)EET(0.006)EDYRQFR 186.96 1.33E-18 196440000 121520 114130 69771 81550 194520 159260 237280 259380 97113 210620 TRUE FALSE FALSE 113002.0755 105085.9231 96788.19973 189852.5213 170121.4878 139612.1204 177910.0343 200324.8362 105530.833 157879.3811 0.715749421 0.665608912 0.613051553 1.20251625 1.077540883 0.884296097 1.126873142 1.268847362 0.668426949 1 17.26846324 -5.25123478 24.78489204 1.043460815 0.664883825 0.524005996 0.160425656 475.0567279 1153813.232 0.042647723 0.072788113 5.61E-06 5.25123478 -0.37857699 QKGDGRPET(ph)PK ddPTM_HeLa_A485_30min_R1 3 QKGDGRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 QKGDGRPET(1)PK;QKGDGRPET(1)PK;QKGDGRPET(1)PK ;; 104.55 0.00075495 1488519000 710350 532990 276729 1201990 605360 658480 1159470 1099750 464620 1525950 TRUE FALSE FALSE 868364.9068 595318.5441 379102.5728 1267651.67 545088.2329 692956.9946 911739.7625 830034.5882 557864.9723 1145558.748 0.758027389 0.519675263 0.330932458 1.106579363 0.475827393 0.604907427 0.795890882 0.724567456 0.486980675 1 20.12762002 -10.5582542 2.617078553 1.024609417 0.646133679 0.211003211 0.206030724 19225741.85 18105216.12 3316009.41 0.052904503 2.77E-11 10.5582542 -0.378475738 QKGDGRPET(ph)PK ddPTM_HeLa_A486_30min_R1 4 QKGDGRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 QKGDGRPET(1)PK;QKGDGRPET(1)PK;QKGDGRPET(1)PK;QKGDGRPET(1)PK ;;; 94.673 0.002098 1693920000 1818950 1299590 431028 1285310 869610 1861690 2543780 1979400 1103590 3826140 TRUE FALSE FALSE 1691450.998 1196605.755 597933.5849 2992266.636 760535.405 1632013.616 1907299.339 1528733.83 1199250.07 2868049.64 0.589756528 0.417219332 0.208480905 1.043310616 0.265175119 0.569032556 0.665016153 0.533022096 0.418141323 1 21.45163856 -11.16790178 2.315049147 2.164289454 0.524374137 0.2965833 0.220263368 9147102.764 2199180.895 55792314.65 0.054344595 6.79E-12 11.16790178 -1.639915317 QKGESRPET(ph)PK ddPTM_HeLa_A485_30min_R1 4 QKGESRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 QKGESRPET(1)PK;QKGESRPET(1)PK;QKGES(0.001)RPET(0.999)PK;QKGES(0.013)RPET(0.987)PK ;;; 114.31 0.00049804 3709660000 2390200 2134890 1006390 3763850 2293820 2352660 3917440 3768560 1731980 4859230 TRUE FALSE FALSE 2921891.744 2384546.814 1378695.54 3969459.595 2065439.227 2475841.64 3080446.941 2844314.751 2079572.499 3647913.389 0.800976184 0.653674186 0.377940865 1.088145241 0.566197441 0.678700774 0.844440811 0.779710056 0.570071786 1 21.79864005 -11.3677821 2.172709806 2.839441333 0.707893573 0.190618967 0.181326191 8120874.49 886395.7221 73400669.46 0.045866018 4.29E-12 11.3677821 -2.13154776 QKGESRPET(ph)PK ddPTM_HeLa_A486_30min_R1 3 QKGESRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 QKGESRPET(1)PK;QKGES(0.012)RPET(0.988)PK;QKGESRPET(1)PK ;; 106.82 0.0006702 1394020000 1823920 1399200 476730 1204260 1038650 1688080 2378280 2072310 1056640 3531660 TRUE FALSE FALSE 1696072.627 1288322.296 661332.6233 2803578.14 908372.832 1479821.853 1783209.189 1600490.251 1148230.406 2647309.349 0.640677912 0.486653476 0.249813126 1.05902929 0.343130595 0.558990907 0.673593054 0.604572432 0.433734881 1 21.33609536 -10.9677112 2.649959902 1.359171004 0.562540291 0.284919557 0.208568303 43707636.13 24996639.84 96461384.87 0.050699811 1.08E-11 10.9677112 -0.796630714 QKGYNHGQGSYSYSNSYNS(ph)PGGGGGSDYNYESK ddPTM_HeLa_A485_30min_R1 2 QKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 33 1 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 QKGYNHGQGSYSYSNS(0.007)Y(0.001)NS(0.992)PGGGGGSDYNYESK;QKGYNHGQGSYSYSNS(0.001)YNS(0.999)PGGGGGSDYNYESK ; 188.96 2.43E-21 656320000 171369 222157 138429 110176 239436 242660 305300 343610 150231 177610 TRUE FALSE FALSE 209489.4428 248136.3286 189639.6476 116194.6359 215596.9111 255365.3024 240070.1609 259339.1087 180380.9837 133335.0957 1.571150055 1.860997867 1.422278558 0.871448251 1.616955461 1.915214453 1.800502409 1.945017607 1.352839497 1 17.02469704 -5.982683726 24.99767047 1.684356381 1.434331596 0.030833263 0.350816627 607.091557 876389.2685 0.110759892 0.125562462 1.04E-06 5.982683726 -0.250024786 QKGYNHGQGSYSYSNSYNS(ph)PGGGGGSDYNYESK ddPTM_HeLa_A486_30min_R1 2 QKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 33 1 Q12906;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 QKGYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK;QKGYNHGQGSYSYSNSYNS(1)PGGGGGSDYNYESK ; 236.9 9.76E-51 727500000 196102 132615 96503 11915.4 178129 146976 197777 199417 127588 142175 TRUE FALSE FALSE 182356.2625 122106.1044 133871.546 27739.65337 155786.3998 128843.5955 148291.1027 154014.1023 138647.4306 106573.4546 1.711085215 1.145745954 1.256143442 0.260286705 1.46177489 1.208965178 1.391445021 1.445145068 1.30095652 1 16.70148861 QKIAEEIGIEGS(ph)DDDALVTGEQDEELSR ddPTM_HeLa_A485_30min_R1 2 QKIAEEIGIEGSDDDALVTGEQDEELSR 28 1 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 QKIAEEIGIEGS(1)DDDALVTGEQDEELSR;QKIAEEIGIEGS(1)DDDALVTGEQDEELSR ; 148.12 1.79E-09 79101000 57594 94760 57193 54265 98563 90029 106912 143010 64926 73096 TRUE FALSE FALSE 70405.5866 105841.3577 78351.0707 57229.35954 88749.72164 94742.77923 84069.37781 107936.5733 77956.05266 54874.51243 1.283028923 1.928789032 1.427822631 1.042913313 1.61732137 1.726535235 1.532029609 1.966970976 1.42062406 1 15.7438486 QKIDDRDS(ph)DEEGASDR ddPTM_HeLa_A485_30min_R1 2 QKIDDRDSDEEGASDR 16 2 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 QKIDDRDS(1)DEEGASDR;QKIDDRDS(1)DEEGASDR ; 177.32 2.23E-13 5815500000 3040000 3052380 2266640 3810100 4077300 3383300 5462000 5764200 2643390 5149000 TRUE FALSE FALSE 3716237.512 3409329.289 3105164.459 4018236.115 3671349.696 3560444.356 4294999.08 4350520.912 3173894.126 3865449.06 0.961398651 0.882000832 0.803312736 1.03952634 0.949786076 0.921094626 1.111125515 1.125489133 0.821093249 1 21.8822046 -5.273655704 24.94002658 1.000493342 0.882213745 0.243760372 0.091072879 999.6837819 2040885.721 0.026082215 0.039004743 5.33E-06 5.273655704 -0.118279596 QKIDDRDS(ph)DEEGASDR ddPTM_HeLa_A486_30min_R1 4 QKIDDRDSDEEGASDR 16 2 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 QKIDDRDS(1)DEEGASDR;QKIDDRDS(1)DEEGASDR;QKIDDRDS(1)DEEGASDR;QKIDDRDS(1)DEEGASDR ;;; 231.49 7.47E-35 7080100000 4809500 4319410 2353147 2693180 4495650 4738290 6551990 6184650 3375560 7628910 TRUE FALSE FALSE 4472378.886 3977124.221 3264348.538 6269859.146 3931763.657 4153727.955 4912612.802 4776540.205 3668156.259 5718581.28 0.782078398 0.695473934 0.570831886 1.096401159 0.687541798 0.726356373 0.859061463 0.835266646 0.641445156 1 22.44722584 -11.66284869 2.066182247 6.404168304 0.769244231 0.206198063 0.137578806 3639837.076 133014.1468 93187476.07 0.034589129 2.17E-12 11.66284869 -5.634924074 QKLQTVLEAVHDLLRPR ddPTM_HeLa_A485_30min_R1 1 QKLQTVLEAVHDLLRPR 17 2 Q9HBI1;B0QYP8;A0A087WZB5;Q9HBI1-3;Q9HBI1-2 Q9HBI1 PARVB Beta-parvin 0 0 98.507 0.00049629 2753700 6119.3 8741.4 4634.8 4372.2 5777.7 7240.3 7589.3 10973 4987.3 5781 FALSE FALSE TRUE 7480.517174 9763.63069 6349.40539 4611.042215 5202.451901 7619.390912 5967.784056 8281.854545 5988.205364 4339.903091 1.723659956 2.249734725 1.463029302 1.062475847 1.198748403 1.755659228 1.375096155 1.908304027 1.379801631 1 12.08344711 -4.832342469 8.161564127 1.41708482 1.984700887 0.39829851 0.290904734 0.238107392 24.08538388 0.077114659 0.162069093 1.47E-05 4.832342469 0.567616067 QKLQTVLEAVHDLLRPR ddPTM_HeLa_A486_30min_R1 1 QKLQTVLEAVHDLLRPR 17 2 Q9HBI1;B0QYP8;A0A087WZB5;Q9HBI1-3;Q9HBI1-2 Q9HBI1 PARVB Beta-parvin 0 0 103.5 0.00022759 4241700 12301 7649.4 5239.9 3562.8 9866.5 6729.9 9601.8 8746.8 4898.6 11998 FALSE FALSE TRUE 11438.76342 7043.233685 7268.929609 8294.378454 8628.951569 5899.633363 7199.328083 6755.344581 5323.214592 8993.622706 1.271874949 0.783136442 0.808231549 0.922251102 0.959452253 0.655979638 0.800492562 0.751126081 0.591887693 1 13.13468665 -6.248956762 24.42296226 0.746879784 0.930469898 0.255232618 0.159173459 827.2984198 1618657.472 0.051281752 0.050914209 5.64E-07 6.248956762 0.183590114 QKNEGRPET(ph)PK ddPTM_HeLa_A485_30min_R1 5 QKNEGRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 QKNEGRPET(1)PK;QKNEGRPET(1)PK;QKNEGRPET(1)PK;QKNEGRPET(1)PK;QKNEGRPET(1)PK ;;;; 90.367 0.0026896 1641660000 749335 644136 380159 1233780 783524 747608 1239930 1268030 533913 1457080 TRUE FALSE FALSE 916021.9856 719462.102 520795.6338 1301178.277 705513.5994 786751.5989 975008.8262 957043.6543 641064.4418 1093856.772 0.837424066 0.657729714 0.47610953 1.189532589 0.644978043 0.719245535 0.891349628 0.874925931 0.58605885 1 20.06099241 -11.36339994 2.194953868 2.461133358 0.767233318 0.122775268 0.188966522 7391238.777 1050133.268 53376797.71 0.04894657 4.33E-12 11.36339994 -1.69390004 QKNEGRPET(ph)PK ddPTM_HeLa_A486_30min_R1 4 QKNEGRPETPK 11 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 QKNEGRPET(1)PK;QKNEGRPET(1)PK;QKNEGRPET(1)PK;QKNEGRPET(1)PK ;;; 100.4 0.0013116 1134890000 510286 390008 165358 364896 317120 529800 653540 575400 314908 944370 TRUE FALSE FALSE 474517.5865 359102.3457 229389.046 849496.3288 277343.8526 464438.6626 490017.3796 444393.9809 342204.479 707893.6052 0.670323313 0.507282935 0.324044524 1.200033907 0.391787481 0.656085405 0.692218966 0.627769452 0.483412304 1 19.43317302 -10.55412604 3.162788262 1.014796931 0.61935581 0.203497758 0.227277517 109021096.6 118162713.2 13541690.33 0.056423089 2.79E-11 10.55412604 -0.395441121 QKNS(ph)PLLSVSSQTITK ddPTM_HeLa_A485_30min_R1 1 QKNSPLLSVSSQTITK 16 1 Q8ND24;E9PRE9 Q8ND24 RNF214 RING finger protein 214 1 0 QKNS(1)PLLSVSSQTITK 83.776 0.0011156 323660000 139110 131710 74801 159800 155270 168060 213490 235450 114880 231300 TRUE FALSE FALSE 170054.5396 147112.3388 102473.0026 168529.4694 139810.7736 176859.3617 167876.1174 177705.5183 137935.3623 173641.1668 0.979344603 0.8472204 0.590142329 0.970561719 0.805170664 1.018533594 0.966799064 1.023406613 0.794370165 1 17.4057495 -6.253503901 24.5915453 0.962470874 0.832513529 0.213243273 0.116989575 760.0189883 2355250.473 0.038995224 0.03831132 5.58E-07 6.253503901 -0.129957345 QKNS(ph)PLLSVSSQTITK ddPTM_HeLa_A486_30min_R1 1 QKNSPLLSVSSQTITK 16 1 Q8ND24;E9PRE9 Q8ND24 RNF214 RING finger protein 214 1 0 QKNS(1)PLLSVSSQTITK 195.56 3.89E-18 0 331490 296980 132690 122150 265460 285410 334850 346140 207330 388280 TRUE FALSE FALSE 308254.2628 273446.2232 184071.1216 284371.3731 232163.5315 250199.016 251066.9883 267331.4782 225301.5313 291052.1607 1.059103159 0.939509339 0.632433448 0.977046081 0.797669843 0.859636346 0.862618534 0.918500236 0.774093313 1 18.1509182 -4.511169655 0.001956501 1.740215516 2.24E-07 0 0.118754653 3880358.033 1263.778063 554571.9084 569564.3781 3.08E-05 4.511169655 -1.740215292 QKRPS(ph)PSRTPEER ddPTM_HeLa_A485_30min_R1 2 QKRPSPSRTPEER 13 3 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59;E9PJG2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 QKRPS(0.996)PS(0.004)RTPEER;QKRPS(0.991)PS(0.009)RTPEER ; 127.3 0.00015503 199624000 88565 158345 104601 75864 184106 207165 285380 471210 115983 121691 TRUE FALSE FALSE 108265.9787 176862.0703 143297.2627 80008.25822 165775.7602 218011.8391 224406.2317 355645.0087 139259.7242 91355.67326 1.185104054 1.935972491 1.568564465 0.875788611 1.814619216 2.386407229 2.456401706 3.892971241 1.524368649 1 16.4792067 -6.142601418 3.418350332 2.449842848 1.43494221 0.199543645 0.755716928 0.332118499 7.193831911 0.254525389 0.255049795 7.20E-07 6.142601418 -1.014900638 QKRPS(ph)PSRTPEER ddPTM_HeLa_A486_30min_R1 2 QKRPSPSRTPEER 13 3 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59;E9PJG2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 QKRPS(0.989)PS(0.007)RT(0.004)PEER;QKRPS(0.998)PS(0.002)RTPEER ; 96.489 0.0063369 124537000 132207 85235 78862 58585 170268 99919 154742 182522 67265 150152 TRUE FALSE FALSE 122939.972 78480.66818 109399.4784 136388.8407 148911.3998 87592.00968 116023.9149 140965.725 73095.58436 112552.9619 1.092285534 0.69727768 0.971982226 1.211774781 1.323034039 0.778229273 1.030838398 1.252439053 0.649432793 1 16.7802445 -4.997137907 24.99267371 1.05021319 0.879743679 0.060586818 0.213867592 211.1196471 1843476.517 0.054990198 0.113487951 1.01E-05 4.997137907 -0.170469511 QKS(ph)DAEEDGGT(ph)VSQEEEDR ddPTM_HeLa_A486_30min_R1 1 QKSDAEEDGGTVSQEEEDR 19 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(1)DAEEDGGT(0.582)VS(0.418)QEEEDR 89.434 0.00055539 1348900000 1890300 1670900 941480 506110 1263200 1758100 1733600 1414100 1476700 2517200 TRUE FALSE FALSE 1757799.732 1538491.799 1306046.27 1178249.657 1104757.677 1541203.497 1299834.944 1092140.3 1604701.545 1886876.736 0.931592244 0.815364231 0.692173604 0.624444425 0.585495415 0.816801367 0.688881748 0.578808503 0.850453829 1 20.84756875 -8.003145307 12.79613396 0.999999901 0.714145179 0.418586851 0.105877696 0.221812261 878.2433558 0.107640053 0.027795824 9.93E-09 8.003145307 -0.285854722 QKS(ph)DAEEDGGT(ph)VSQEEEDRKPK ddPTM_HeLa_A485_30min_R1 1 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(1)DAEEDGGT(0.706)VS(0.294)QEEEDRKPK 187.29 8.39E-19 3271000000 631300 246730 96032 1259400 261550 384060 798560 945290 254440 3002500 TRUE FALSE FALSE 771730.507 275582.9272 131558.233 1328197.833 235509.1636 404168.7877 627941.1324 713456.1453 305503.7741 2254032.007 0.342377794 0.122262207 0.058365734 0.589254203 0.104483505 0.17930925 0.278585721 0.316524407 0.135536573 1 21.10407657 -10.88746147 2.538497762 1.395626434 0.23614362 0.705141409 0.148153792 27898545.58 15942255.28 66153484.72 0.036707307 1.30E-11 10.88746147 -1.159482814 QKS(ph)DAEEDGGTVS(ph)QEEEDR ddPTM_HeLa_A485_30min_R1 3 QKSDAEEDGGTVSQEEEDR 19 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(1)DAEEDGGT(0.218)VS(0.782)QEEEDR;QKS(1)DAEEDGGT(0.022)VS(0.978)QEEEDR;QKS(1)DAEEDGGT(0.003)VS(0.997)QEEEDR ;; 199.4 2.38E-22 924260000 1534380 1046360 512590 1713960 737870 894910 1151220 1187630 786980 3331070 TRUE FALSE FALSE 1875697.537 1168722.7 702218.3716 1807589.295 664405.072 941766.1038 905252.4424 896361.8804 944919.6674 2500695.553 0.75007033 0.467359051 0.280809222 0.72283461 0.265688109 0.376601663 0.362000261 0.358445025 0.377862738 1 21.253898 -13.43058757 5.043438628 0.987762837 0.464409749 0 0.233531006 0 0 0 0.049854207 3.71E-14 13.43058757 -0.523353088 QKS(ph)DAEEDGGTVS(ph)QEEEDR ddPTM_HeLa_A486_30min_R1 1 QKSDAEEDGGTVSQEEEDR 19 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(1)DAEEDGGT(0.4)VS(0.6)QEEEDR 85.399 0.0010216 1321900000 1459200 1141600 604090 408460 789690 1198700 1311400 886310 1028400 1822300 TRUE FALSE FALSE 1356917.615 1051135.458 838009.8261 950915.5224 690639.7166 1050816.581 983273.8494 684516.561 1117542.54 1365984.219 0.993362585 0.769507761 0.613484266 0.696139464 0.505598606 0.76927432 0.719828118 0.50111601 0.818122585 1 20.38150939 -10.97919741 6.795919354 1.218041454 0.698066167 0.276712478 0.139732795 0.063082227 0.000193097 0.018488597 0.032747174 1.05E-11 10.97919741 -0.519975287 QKS(ph)DAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A485_30min_R1 8 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(1)DAEEDGGT(0.003)VS(0.997)QEEEDRKPK;QKS(1)DAEEDGGT(0.074)VS(0.926)QEEEDRKPK;QKS(0.999)DAEEDGGT(0.057)VS(0.943)QEEEDRKPK;QKS(1)DAEEDGGT(0.028)VS(0.972)QEEEDRKPK;QKS(1)DAEEDGGT(0.152)VS(0.848)QEEEDRKPK;QKS(1)DAEEDGGT(0.278)VS(0.722)QEEEDRKPK;QKS(1)DAEEDGGT(0.24)VS(0.76)QEEEDRKPK;QKS(1)DAEEDGGT(0.017)VS(0.983)QEEEDRKPK ;;;;;;; 207.2 2.82E-27 26944730000 3718198 1418983 497260 6904400 1529804 2135980 4827462 5413716 1424916 15577180 TRUE FALSE FALSE 4545298.317 1584920.718 681217.1667 7281569.889 1377491.342 2247816.61 3796035.307 4085993.663 1710883.571 11694075.7 0.388683846 0.135531936 0.058253186 0.622671691 0.117793948 0.192218408 0.324611829 0.34940715 0.146303446 1 23.4792745 -10.4876214 2.848475525 1.025696213 0.259026892 0.660030971 0.159435326 19033055.69 20867041.56 3844015.974 0.040845593 3.25E-11 10.4876214 -0.766669321 QKS(ph)DAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A486_30min_R1 4 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(1)DAEEDGGT(0.041)VS(0.959)QEEEDRKPK;QKS(1)DAEEDGGT(0.051)VS(0.949)QEEEDRKPK;QKS(1)DAEEDGGTVS(1)QEEEDRKPK;QKS(1)DAEEDGGT(0.006)VS(0.994)QEEEDRKPK ;;; 207.6 2.19E-27 4709960000 1120990 846300 371023 880970 743480 1256200 1856220 1288550 754660 3089330 TRUE FALSE FALSE 1042414.39 779236.1058 514693.0419 2050942.682 650225.8057 1101222.816 1391774.123 995175.2938 820074.5364 2315741.66 0.450142781 0.336495266 0.222258403 0.885652626 0.280785123 0.475537853 0.60100578 0.429743659 0.354130407 1 21.14304289 -11.11525155 2.434290338 2.047373091 0.451139247 0.46396451 0.177841741 21011355.79 5312032.35 121875858.9 0.044579637 7.67E-12 11.11525155 -1.596233845 QKS(ph)DAEEDGGTVSQEEEDR ddPTM_HeLa_A486_30min_R1 2 QKSDAEEDGGTVSQEEEDR 19 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKS(1)DAEEDGGTVSQEEEDR;QKS(1)DAEEDGGTVSQEEEDR ; 154.77 7.73E-10 290570000 578120 501770 317560 192795 338800 488290 552510 378753 431210 711970 TRUE FALSE FALSE 537596.7734 462007.9178 440527.7366 448836.5033 296304.5448 428049.7444 414266.1541 292519.21 468587.63 533688.0779 1.007323933 0.865689036 0.825440468 0.84100905 0.555201731 0.802059784 0.776232731 0.548108946 0.878017796 1 19.02563726 -4.382329264 1.063001751 0.745315162 1.094395337 0.219217079 0.130667137 1.936663894 2.082485029 0.040631879 0.731163498 4.15E-05 4.382329264 0.349080176 QKS(ph)DAEEDGGTVSQEEEDRKPK ddPTM_HeLa_A485_30min_R1 3 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK ;; 218.98 7.52E-36 7429370000 2357530 886510 309809 3881420 883150 1352710 2673200 3158990 870090 8766400 TRUE FALSE FALSE 2881954.415 990179.6329 424420.2413 4093452.146 795220.4851 1423535.804 2102048.982 2384242.749 1044709.082 6581097.814 0.437913931 0.150458124 0.064490797 0.622001414 0.120834017 0.216306739 0.319407041 0.362286478 0.158743892 1 22.64989683 -10.67241897 2.943447336 1.079153701 0.270973879 0.649486477 0.160330418 61401735.44 59532997.92 36496304.06 0.039179728 2.13E-11 10.67241897 -0.808179822 QKS(ph)DAEEDGGTVSQEEEDRKPK ddPTM_HeLa_A486_30min_R1 4 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK ;;; 168.72 3.41E-13 21146500000 2417590 1511830 501396 1547550 1262170 2465040 3478680 2641750 1290550 5325280 TRUE FALSE FALSE 2248129.425 1392027.085 695549.9591 3602774.609 1103856.869 2160928.427 2608277.47 2040281.194 1402415.913 3991795.226 0.563187563 0.348722068 0.1742449 0.902544946 0.276531437 0.541342505 0.653409637 0.511118702 0.351324613 1 21.92860628 -11.27762014 2.320644489 3.285531814 0.481623334 0.384607227 0.19722052 25034893.15 3404039.438 300791698.5 0.048024646 5.28E-12 11.27762014 -2.80390848 QKS(ph)DTVLFPAK ddPTM_HeLa_A485_30min_R1 1 QKSDTVLFPAK 11 1 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 QKS(0.993)DT(0.007)VLFPAK 90.444 0.00043543 0 156750 154780 112120 214980 188150 223760 252560 240100 157410 302760 TRUE FALSE FALSE 191618.4967 172880.1746 153597.8537 226723.813 169417.1254 235475.7276 198598.4928 181215.0985 189000.7431 227287.5039 0.843066572 0.760623315 0.675786619 0.997519922 0.745386889 1.036025842 0.873776558 0.797294596 0.831549205 1 17.79415884 -5.254246001 24.99806761 0.887380955 0.759905289 0.296769827 0.096167227 755.9618721 2627075.039 0.025655228 0.043288328 5.57E-06 5.254246001 -0.127475666 QKS(ph)EEELKDKNQLLEAVNK ddPTM_HeLa_A486_30min_R1 1 QKSEEELKDKNQLLEAVNK 19 3 H0YM11;V9GY01;Q9Y448-3;Q9Y448-2;Q9Y448 H0YM11 KNSTRN Small kinetochore-associated protein 1 0 QKS(1)EEELKDKNQLLEAVNK 129.93 3.86E-06 146520000 256030 156930 46674 179310 130420 250880 359990 329940 105670 493210 TRUE FALSE FALSE 238083.6191 144494.2953 64747.42277 417442.7418 114061.5075 219928.9764 269916.6944 254819.8645 114829.5607 369707.0057 0.643979193 0.390834615 0.175131717 1.129117748 0.308518653 0.594873705 0.730082715 0.689248136 0.310596118 1 18.49602286 -11.45787066 2.303020801 6.024292059 0.556910451 0.209447133 0.260701116 12328841.74 894458.7648 324965765.5 0.063551878 3.48E-12 11.45787066 -5.467381608 NSPTFKS(ph)FEER ddPTM_HeLa_A485_30min_R1 4 NSPTFKSFEER 11 1 E9PNK6;E9PPQ1;J3KNE7;Q16890-5;Q16890 E9PNK6 TPD52L1 Tumor protein D53 1 0 NSPTFKS(1)FEER;NSPT(0.117)FKS(0.883)FEER;NS(0.001)PT(0.198)FKS(0.801)FEER;NSPT(0.033)FKS(0.966)FEER ;;; 130.27 2.10E-05 1922050000 928090 1056750 810670 1896310 2213990 1310360 3054250 3878990 1644640 4122750 TRUE FALSE FALSE 1134540.419 1180327.72 1110570.568 1999900.614 1993557.382 1378968.423 2401684.537 2927661.62 1974704.162 3095024.299 0.366569148 0.38136299 0.358824507 0.646166369 0.644116876 0.44554365 0.77598245 0.945925246 0.638025415 1 21.56151931 -5.633203737 0.224171449 1.049648031 0.025977047 0.718962566 0.118109606 3.334312511 0.273598437 0.260601022 0.987550714 2.33E-06 5.633203737 -1.023670984 QKS(ph)EEPSVSIPFLQTALLR ddPTM_HeLa_A486_30min_R1 2 QKSEEPSVSIPFLQTALLR 19 1 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 QKS(0.998)EEPS(0.002)VSIPFLQTALLR;QKS(0.997)EEPS(0.003)VSIPFLQTALLR ; 156.47 2.59E-09 208965000 267430 305570 110487 191799 244300 447770 648140 668690 296510 546260 TRUE FALSE FALSE 248684.538 281355.5203 153270.5253 446517.765 213657.616 392528.69 485968.5167 516443.8844 322211.7255 409472.9404 0.607328381 0.687116272 0.374311732 1.09046953 0.521786899 0.958619365 1.186814729 1.261240569 0.786893818 1 18.64340859 -6.436983733 4.889683743 1.080347266 0.668064087 0.463818843 0.206854475 0.19694809 8.046671193 0.073339905 0.063490903 3.66E-07 6.436983733 -0.412283179 QKS(ph)FSEDVISHK ddPTM_HeLa_A485_30min_R1 2 QKSFSEDVISHK 12 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 QKS(0.999)FS(0.001)EDVISHK;QKS(0.922)FS(0.078)EDVISHK ; 185.14 3.50E-13 1672930000 1614680 1067340 776130 2256680 1613960 1471560 2353700 2012200 1297430 3543600 TRUE FALSE FALSE 1973859.995 1192156.128 1063252.784 2379956.714 1453268.475 1548608.606 1850812.767 1518704.795 1557812.3 2660245.735 0.741984084 0.448137596 0.399682169 0.894637921 0.546291065 0.582129908 0.695730001 0.570888913 0.585589624 1 21.34312809 -11.07066889 2.235278461 1.569906844 0.603903268 0.430935664 0.135356156 9225721.204 2739656.414 26806792.94 0.033786837 8.50E-12 11.07066889 -0.966003576 QKS(ph)FSEDVISHK ddPTM_HeLa_A486_30min_R1 2 QKSFSEDVISHK 12 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 QKS(0.831)FS(0.169)EDVISHK;QKS(0.97)FS(0.03)EDVISHK ; 188.44 2.52E-13 836360000 2245000 2079280 1056460 878050 2000480 2511600 2877500 2708000 1894430 3081800 TRUE FALSE FALSE 2087637.093 1914510.28 1465549.605 2044144.774 1749561.145 2201744.328 2157519.065 2091447.515 2058640.718 2310097.221 0.903700967 0.828757449 0.634410358 0.884873916 0.757353902 0.95309596 0.93395163 0.905350431 0.891148952 1 21.13952214 -6.266424807 24.98668538 0.930621441 0.798629527 0.44877042 0.074554471 416.4156562 2087044.963 0.025935602 0.023586628 5.41E-07 6.266424807 -0.131991914 QKS(ph)FSEDVISHKGDLR ddPTM_HeLa_A485_30min_R1 2 QKSFSEDVISHKGDLR 16 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 QKS(0.98)FS(0.02)EDVISHKGDLR;QKS(0.996)FS(0.004)EDVISHKGDLR ; 57.366 0.014877 562800000 486750 844990 303850 369200 560350 979090 1201590 2043650 381300 536300 TRUE FALSE FALSE 595025.8582 943804.2301 416256.7593 389368.4611 504559.5865 1030353.638 944860.4804 1542441.633 457823.4125 402610.2799 1.477920182 2.344212946 1.03389501 0.967110083 1.253220824 2.559183632 2.346836451 3.831103452 1.137137911 1 18.61902448 -6.260365977 24.9765604 2.36254528 1.420794159 0.157097211 0.824214549 144.6479112 3365779.973 0.274262769 0.259536732 5.49E-07 6.260365977 -0.941751121 QKS(ph)LTLTPTR ddPTM_HeLa_A486_30min_R1 1 QKSLTLTPTR 10 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y802 Q3V6T2 CCDC88A Girdin 1 0 QKS(0.999)LT(0.001)LTPTR 83.729 0.0025596 69376000 78160 72088 58849 33138 81538 87255 94774 98643 64462 92170 TRUE FALSE FALSE 72681.38762 66375.48434 81636.90883 77146.9387 71310.74373 76490.36524 71060.54278 76184.14226 70049.61806 69090.03207 1.051980806 0.960709995 1.181601837 1.116614603 1.032142287 1.107111445 1.028520912 1.102679214 1.013888921 1 16.07618996 -7.882870733 6.098430942 1.000929278 1.07222487 0.176846568 0.05698327 0.363035831 16.68871219 0.055272066 0.014360138 1.31E-08 7.882870733 0.071295592 QKS(ph)LTNLSFLTDSEK ddPTM_HeLa_A485_30min_R1 1 QKSLTNLSFLTDSEK 15 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 QKS(0.981)LT(0.019)NLSFLTDSEK 311.87 3.40E-78 287720000 297950 272320 190870 410110 303020 367390 532880 505790 218460 578550 TRUE FALSE FALSE 364227.9496 304165.4551 261480.7558 432513.2708 272850.2648 386625.9723 419025.8348 381744.2095 262302.9182 434328.1324 0.83860087 0.70031258 0.602035043 0.995821451 0.628212277 0.890170227 0.964767887 0.878930424 0.603927995 1 18.72842588 -6.318418115 24.99476706 0.866068052 0.755172529 0.138082045 0.14303672 620.5052539 272194.0402 0.049813636 0.043931512 4.80E-07 6.318418115 -0.110895524 QKS(ph)LTNLSFLTDSEK ddPTM_HeLa_A486_30min_R1 1 QKSLTNLSFLTDSEK 15 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 QKS(0.579)LT(0.42)NLSFLTDSEK 153.36 1.77E-08 206600000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 QKS(ph)PAQSDSTTQR ddPTM_HeLa_A485_30min_R1 8 QKSPAQSDSTTQR 13 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 QKS(0.999)PAQS(0.001)DSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(0.506)PAQS(0.3)DS(0.18)T(0.013)T(0.001)QR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(0.999)PAQS(0.001)DSTTQR ;;;;;;; 185.96 1.49E-17 3287786000 608606 598549 465206.3 771136 750377 670736 876661 828181 574744 1001373 TRUE FALSE FALSE 743988.305 668544.0989 637305.4692 813261.2071 675666.8311 705854.6998 689355.2157 625068.3112 690089.8489 751749.14 0.989676297 0.889318076 0.847763483 1.081825258 0.898792955 0.938949794 0.917001669 0.831485236 0.9179789 1 19.51989179 -6.91992784 5.073280399 0.900344176 0.938645621 0.01132759 0.070999098 0.686040508 31.04867158 0.030353821 0.020077053 1.20E-07 6.91992784 0.038301446 QKS(ph)PAQSDSTTQR ddPTM_HeLa_A486_30min_R1 8 QKSPAQSDSTTQR 13 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 QKS(1)PAQSDSTTQR;QKS(0.998)PAQS(0.002)DSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR;QKS(1)PAQSDSTTQR ;;;;;;; 197.45 1.11E-21 3594137000 581560.4 414660.8 337575.7 254764.9 493625.6 617879.9 672756 596710.5 455830.1 691116 TRUE FALSE FALSE 540796.0191 381801.568 468294.0516 593105.5623 431710.4744 541652.1601 504425.3331 460852.5452 495341.8201 518056.0552 1.043894794 0.736988911 0.903944751 1.144867542 0.833327726 1.045547397 0.973688712 0.889580463 0.95615487 1 18.98274868 -5.014231055 24.82406152 0.973863719 0.872948093 0.111223179 0.104851944 1078.855439 1881919.957 0.026742951 0.048805636 9.68E-06 5.014231055 -0.100915626 QKS(ph)PEIHR ddPTM_HeLa_A485_30min_R1 9 QKSPEIHR 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR ;;;;;;;; 149.96 0.00014274 1.45E+11 36155990 36507010 24751810 45518340 39173220 35794860 52246400 55698920 29652110 55191030 TRUE FALSE FALSE 44198765.24 40776187.25 33908534.53 48004891.66 35272996.67 37669023.52 41083529.83 42038672.54 35603016.49 41432921.94 1.066754725 0.984149448 0.818395926 1.158617095 0.851327761 0.909156819 0.991567283 1.014620031 0.85929292 1 25.30427423 -4.333509998 4.326151036 0.952032259 1.068694645 0.119274013 0.094457997 0.411287089 13.52648651 0.022624148 0.116878554 4.64E-05 4.333509998 0.116662386 QKS(ph)PEIHR ddPTM_HeLa_A486_30min_R1 8 QKSPEIHR 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR;QKS(1)PEIHR ;;;;;;; 132.56 0.00025297 1.30E+11 46316390 37555930 23502049 19665348 35672090 44835810 50667190 42589170 33017380 54960820 TRUE FALSE FALSE 43069850.24 34579861.33 32602671.78 45781923.98 31197763.84 39304423.62 37989723.16 32892545.71 35879353.08 41198272.94 1.045428538 0.839352207 0.791360158 1.11125833 0.757259021 0.954030857 0.922119314 0.798396228 0.870894592 1 25.29608052 QKS(ph)PEIHRR ddPTM_HeLa_A485_30min_R1 10 QKSPEIHRR 9 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR ;;;;;;;;; 140 6.17E-05 25125271000 3343587 3692465 1854942 3600429 2115880 4059166 4455150 6514234 2729598 4013560 TRUE FALSE FALSE 4087356.393 4124266.662 2541162.236 3797111.32 1905215.558 4271697.655 3503270.807 4916607.898 3277403.281 3013053.356 1.356549623 1.368799744 0.843384413 1.260220405 0.632320551 1.417730505 1.162697899 1.631769277 1.087734897 1 21.52279479 QKS(ph)PEIHRR ddPTM_HeLa_A486_30min_R1 7 QKSPEIHRR 9 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR;QKS(1)PEIHRR ;;;;;; 138.89 6.70E-05 10697820000 2975510 1343103 1646237 1489556 1255647 3561210 2633640 2148360 2203870 3681390 TRUE FALSE FALSE 2766942.115 1236670.627 2283704.054 3467761.646 1098152.045 3121864.118 1974675.416 1659225.326 2394903.226 2759545.982 1.002680199 0.448142787 0.827565139 1.256642096 0.397946638 1.131296285 0.71557982 0.601267505 0.867861323 1 21.39599949 -11.31882007 1.612323737 1.660454381 0.797805102 0.045911421 0.264017683 1924160.537 234286.6887 4604344.228 0.069131738 4.80E-12 11.31882007 -0.862649278 QKS(ph)QT(ph)PPRR ddPTM_HeLa_A485_30min_R1 1 QKSQTPPRR 9 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QKS(1)QT(1)PPRR 70.563 0.011944 1393000000 1514400 1634800 614110 2827200 880010 1598100 1833100 2465700 1362300 3083400 TRUE FALSE FALSE 1851273.055 1825975.639 841294.8442 2981642.777 792393.1145 1681774.045 1441443.21 1860983.209 1635701.114 2314765.126 0.799767127 0.788838409 0.363447174 1.28809733 0.342321174 0.726541983 0.622716834 0.803962004 0.70663805 1 21.14243438 -8.897839757 1.064503701 1.001539028 0.709676079 0.104631385 0.249073073 15.79670032 16.58927998 0.302228674 0.070497472 1.27E-09 8.897839757 -0.291862949 QKS(ph)QT(ph)PPRR ddPTM_HeLa_A486_30min_R1 1 QKSQTPPRR 9 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QKS(1)QT(1)PPRR 64.224 0.018995 326140000 1084700 317340 479690 530800 351150 1467300 871380 670150 995410 1619900 TRUE FALSE FALSE 1008668.131 292192.8227 665438.8145 1235729.225 307105.4927 1286279.444 653351.5075 517571.4743 1081692.94 1214266.496 0.83068102 0.240633192 0.548017109 1.017675468 0.252914409 1.059305719 0.538062698 0.426242078 0.890820049 1 20.21165366 -13.99999993 0.182500222 2.548575687 0.557195754 0.139859499 0.278979886 267.0005902 2.580953655 149.4104167 0.815128944 1.00E-14 13.99999993 -1.991379933 QKS(ph)QT(ph)PPRRS(ph)R ddPTM_HeLa_A485_30min_R1 1 QKSQTPPRRSR 11 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 QKS(1)QT(1)PPRRS(1)R 52.527 0.025534 250950000 34185 56553 46566 65996 174250 120570 237010 450930 77796 135380 TRUE FALSE FALSE 41789.33531 63166.3814 63792.70117 69601.19437 156901.0582 126882.8588 186370.8773 340338.7105 93408.94361 101632.2575 0.411181807 0.621519023 0.627681631 0.684833694 1.543811601 1.248450658 1.833776814 3.348727253 0.919087561 1 16.63299885 -5.955324552 1.208135959 1.90902981 0.513728185 0.378979314 0.649950081 0.430697083 1.322006653 0.283114841 0.338539885 1.11E-06 5.955324552 -1.395301625 QKS(ph)SPVNNHHSPGQTPTLGQPEAR ddPTM_HeLa_A485_30min_R1 1 QKSSPVNNHHSPGQTPTLGQPEAR 24 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 0 QKS(0.5)S(0.5)PVNNHHSPGQTPTLGQPEAR 107.75 0.00019417 67937000 20110 31473 22755 14410 32143 21141 29743 34872 20501 24546 TRUE FALSE FALSE 24583.40012 35153.49357 31173.02141 15197.18181 28942.73006 22247.91007 23388.16507 26319.58732 24615.36265 18427.13394 1.334087016 1.907702722 1.691691259 0.824717607 1.570658256 1.207345111 1.26922424 1.428306074 1.335821552 1 14.16954408 -1 0.122004083 0.979042528 3.034366709 0.20990299 0.267826216 149.1276133 1.249490768 1.804256944 52.21462069 0.1 1 2.055324181 QKS(ph)YTLVVAK ddPTM_HeLa_A485_30min_R1 2 QKSYTLVVAK 10 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 QKS(0.994)YT(0.006)LVVAK;QKS(1)YTLVVAK ; 157.38 7.03E-07 5197400000 4298330 3813570 2571060 4857280 4612810 4484850 5992840 6666220 3454290 6522590 TRUE FALSE FALSE 5254478.679 4259533.838 3522202.085 5122620.907 4153542.44 4719669.811 4712420.777 5031319.093 4147534.318 4896628.352 1.073080965 0.869891185 0.719311704 1.046152687 0.848245393 0.963861145 0.962380732 1.027506833 0.847018401 1 22.22335727 -6.356648395 24.99670955 0.962012263 0.905852107 0.051785625 0.10296531 163.8573067 43006.66924 0.03594858 0.031703668 4.40E-07 6.356648395 -0.056160157 QKS(ph)YTLVVAK ddPTM_HeLa_A486_30min_R1 1 QKSYTLVVAK 10 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 QKS(0.96)YT(0.04)LVVAK 180.85 7.55E-10 1714300000 1420400 1124300 514330 561050 1115800 1539700 1707200 1811200 1093100 1895600 TRUE FALSE FALSE 1320837.295 1035206.373 713492.3502 1306152.754 975845.9596 1349747.469 1280040.503 1398829.298 1187850.788 1420929.422 0.929558692 0.728541726 0.502130746 0.91922423 0.686765961 0.949904652 0.900847349 0.984446713 0.83596748 1 20.43840347 -6.26955548 24.64290691 0.931174551 0.747142264 0.360560873 0.120341055 575.0299653 1745957.765 0.041764632 0.037477107 5.38E-07 6.26955548 -0.184032286 QKSDAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A485_30min_R1 7 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKSDAEEDGGT(0.151)VS(0.849)QEEEDRKPK;QKSDAEEDGGT(0.005)VS(0.995)QEEEDRKPK;QKSDAEEDGGT(0.107)VS(0.893)QEEEDRKPK;QKSDAEEDGGTVS(1)QEEEDRKPK;QKSDAEEDGGT(0.002)VS(0.998)QEEEDRKPK;QKSDAEEDGGT(0.011)VS(0.989)QEEEDRKPK;QKSDAEEDGGTVS(1)QEEEDRKPK ;;;;;; 295.95 2.23E-87 14210170000 3079330 1302246 388715 4862960 1297394 2052281 3771230 4910780 1262614 11433160 TRUE FALSE FALSE 3764316.335 1454532.342 532516.8543 5128611.191 1168220.898 2159735.26 2965475.902 3706403.505 1516009.048 8583083.624 0.438573886 0.169465009 0.062042604 0.597525483 0.136107365 0.251626962 0.34550239 0.431826563 0.176627552 1 23.03306462 -13.45337699 0.44731567 10 0.279823121 0.646219621 0.157157814 458.6080532 4.514961384 4024.252298 0.083536602 3.52E-14 13.45337699 -9.720176879 QKSDAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A486_30min_R1 6 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKSDAEEDGGT(0.004)VS(0.996)QEEEDRKPK;QKSDAEEDGGTVS(1)QEEEDRKPK;QKSDAEEDGGT(0.007)VS(0.993)QEEEDRKPK;QKSDAEEDGGTVS(1)QEEEDRKPK;QKSDAEEDGGT(0.029)VS(0.971)QEEEDRKPK;QKSDAEEDGGT(0.026)VS(0.974)QEEEDRKPK ;;;;; 295.3 2.35E-87 8303010000 3064530 1796480 616264 1747180 1673280 3105360 4567850 3186410 1698380 6534380 TRUE FALSE FALSE 2849722.272 1654120.382 854897.9249 4067523.338 1463401.62 2722252.256 3424925.616 2460934.002 1845596.946 4898128.716 0.58179816 0.337704556 0.174535618 0.830423938 0.298767489 0.555773932 0.699231444 0.502423302 0.376796334 1 22.22379926 -14 0.255131648 4.188743447 0.441843989 0.401585924 0.186917193 192.6637547 1.904438885 321.5737669 0.258828202 1.00E-14 14 -3.746899459 QKSLT(ph)NLSFLTDSEK ddPTM_HeLa_A485_30min_R1 1 QKSLTNLSFLTDSEK 15 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 QKS(0.127)LT(0.872)NLSFLTDSEK 143.57 1.08E-07 181510000 109500 108770 66966 146990 118420 143000 202180 168730 83621 198860 TRUE FALSE FALSE 133857.8972 121489.7053 91739.51009 155019.6915 106629.689 150487.2589 158982.5913 127348.7029 100402.9677 149287.8617 0.896642873 0.813794932 0.614514194 1.03839448 0.714255585 1.008034124 1.064939838 0.853041242 0.67254609 1 17.18773734 -5.269902897 24.99604685 0.903912694 0.778865089 0.15599781 0.140812039 1249.900372 3691437.962 0.040216068 0.060761871 5.37E-06 5.269902897 -0.125047605 QKSPEIHR ddPTM_HeLa_A486_30min_R1 1 QKSPEIHR 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 0 70.028 0.021548 140550000 180440 144310 100450 78394 156160 185600 222330 192380 154430 247600 FALSE FALSE TRUE 167792.0878 132874.35 139346.9301 182505.1938 136572.9567 162702.559 166700.6824 148579.2736 167816.1167 185599.3484 0.904055371 0.715920348 0.750794285 0.98332885 0.735848255 0.876633245 0.898174934 0.80053769 0.904184838 1 17.50183212 -14 0.139294253 1.581287274 0.776225266 0.285654699 0.081058154 176.1051052 1.50421381 28.17406512 0.496770812 1.00E-14 14 -0.805062008 QKSQT(ph)PPRR ddPTM_HeLa_A485_30min_R1 2 QKSQTPPRR 9 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QKSQT(1)PPRR;QKS(0.001)QT(0.999)PPRR ; 124.1 0.00030349 164334000 259850 370770 122817 215840 147512 445670 328200 721450 251300 264810 TRUE FALSE FALSE 317652.736 414128.3262 168252.1191 227630.7927 132825.1873 469004.5921 258077.3889 544513.2563 301733.6049 198797.7405 1.597868946 2.083164151 0.846348247 1.145037122 0.668142339 2.359204843 1.298190755 2.739031415 1.517791924 1 17.60094183 -6.268570791 24.99854925 1.861242405 1.283123994 0.151825078 0.593496125 995.5437035 3489782.646 0.204585658 0.184164467 5.39E-07 6.268570791 -0.578118411 QKSS(ph)PVNNHHS(ph)PGQTPTLGQPEAR ddPTM_HeLa_A485_30min_R1 1 QKSSPVNNHHSPGQTPTLGQPEAR 24 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 2 0 QKS(0.446)S(0.554)PVNNHHS(1)PGQTPTLGQPEAR 146.28 8.36E-09 270780000 87254 106190 76773 91117 126370 112120 157740 190170 89480 132410 TRUE FALSE FALSE 106663.3513 118607.9968 105174.5275 96094.49099 113788.1591 117990.4298 124037.5604 143530.5093 107437.8152 99402.62383 1.07304362 1.193207907 1.058065909 0.966719864 1.144719875 1.186995124 1.247829842 1.443930792 1.080834802 1 16.60099631 -6.196885471 2.864081023 1.226254365 1.079306922 0.143642133 0.121851793 0.413184063 6.681258422 0.04370498 0.042369588 6.35E-07 6.196885471 -0.146947443 QKSWWDAVCTLIHR ddPTM_HeLa_A485_30min_R1 2 QKSWWDAVCTLIHR 14 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 0 0 ; ; 115.68 0.00031565 17809100 30633.8 56473 39778.4 22545.4 46764.5 47665.8 64651 86519 31280.5 32268.4 FALSE FALSE TRUE 37448.18312 63077.0261 54494.08548 23776.99811 42108.46218 50161.50758 50837.7857 65300.07959 37558.20943 24224.48174 1.545881705 2.603854513 2.249545979 0.981527629 1.738260601 2.070694768 2.098611902 2.695623391 1.550423651 1 14.56417818 -8.003591734 24.9719684 0.999999908 1.99814203 0.30617013 0.47302352 143.6980278 999086.1108 0.475983423 0.122898391 9.92E-09 8.003591734 0.998142122 QKVDS(ph)LLENLEK ddPTM_HeLa_A485_30min_R1 1 QKVDSLLENLEK 12 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 1 0 QKVDS(1)LLENLEK 76.85 0.0039446 11241000 28084 25333 15589 39493 31314 32356 45452 47339 22063 60160 TRUE FALSE FALSE 34331.18891 28295.47398 21356.01981 41650.40259 28196.26821 34050.11013 35740.80889 35729.03603 26490.84173 45163.21916 0.760158145 0.62651588 0.4728631 0.922219526 0.624319274 0.753934524 0.791369826 0.791109152 0.586557872 1 15.4628607 -14 0.218079463 2.447546728 0.667962282 0.333230742 0.123113585 177.0715232 1.771235218 112.8468718 0.239066663 1.00E-14 14 -1.779584446 QKVDSLLENLEK ddPTM_HeLa_A485_30min_R1 2 QKVDSLLENLEK 12 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 175.28 7.31E-11 232140000 386840 375380 211320 428830 417330 445210 604370 666120 293880 601870 FALSE FALSE TRUE 472891.2234 419277.4256 289496.0618 452255.897 375779.1599 468520.5072 475241.4123 502753.0256 352859.0204 451834.8856 1.046601842 0.927943899 0.640712063 1.000931782 0.831673631 1.036928582 1.051803275 1.112691918 0.780946827 1 18.78543614 -6.26800182 24.43534459 1.006975441 0.88406541 0.141416934 0.130071984 714.452874 2660266.605 0.045242673 0.040865669 5.40E-07 6.26800182 -0.122910031 QKVDSLLENLEK ddPTM_HeLa_A486_30min_R1 1 QKVDSLLENLEK 12 1 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;G3V576;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 98.531 0.0015961 91197000 147420 119040 63047 66641 148160 128660 155770 156090 101370 173370 FALSE FALSE TRUE 137086.6193 109606.8369 87460.48686 155143.6158 129576.3913 112787.2373 116794.6984 120551.7144 110156.8332 129957.0236 1.054861181 0.843408335 0.67299546 1.193807088 0.997071091 0.867881044 0.898717863 0.927627543 0.847640475 1 16.98767508 -5.777469192 0.003029336 1.847382678 8.23E-05 0.001292004 0.133986819 675169.2618 594.8654575 179290.1086 183458.2198 1.67E-06 5.777469192 -1.847300381 QKVLS(ph)PPHIK ddPTM_HeLa_A485_30min_R1 1 QKVLSPPHIK 10 1 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 QKVLS(1)PPHIK 82.543 0.0035861 212280000 286080 307670 174790 249780 316830 344490 469010 551670 193070 319720 TRUE FALSE FALSE 349717.509 343649.3301 239452.0946 263424.8489 285285.2927 362526.9637 368802.182 416372.0675 231817.3781 240019.688 1.457036762 1.431754757 0.997635222 1.097513504 1.188591216 1.510405112 1.53654971 1.734741308 0.965826512 1 17.87279322 -6.247641132 24.32398278 1.407116187 1.224694317 0.023606854 0.257124738 1365.606192 2407333.719 0.085643049 0.085182406 5.65E-07 6.247641132 -0.18242187 QKVLS(ph)PPHIK ddPTM_HeLa_A486_30min_R1 1 QKVLSPPHIK 10 1 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 QKVLS(1)PPHIK 73.466 0.0070191 368020000 317090 208700 106430 129250 221500 234320 284360 290010 162660 354920 TRUE FALSE FALSE 294863.6285 192161.8519 147642.5463 300900.5319 193717.4046 205411.9808 213210.1203 223981.0539 176759.4998 266045.7219 1.108319376 0.722288825 0.554951778 1.131010602 0.728135763 0.772092779 0.801404055 0.841889328 0.664395197 1 18.02131468 QKYLS(ph)FTPPEK ddPTM_HeLa_A485_30min_R1 2 QKYLSFTPPEK 11 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 QKYLS(0.996)FT(0.004)PPEK;QKYLS(0.993)FT(0.007)PPEK ; 148.57 3.61E-07 774860000 1442340 1595660 936780 1270420 1452880 1767740 2491200 2598800 1190420 1683790 TRUE FALSE FALSE 1763183.557 1782258.557 1283333.905 1339819.828 1308226.166 1860296.133 1958934.769 1961440.225 1429326.375 1264052.141 1.394866161 1.409956519 1.015253931 1.059940318 1.034946363 1.471692561 1.549726238 1.551708321 1.130749538 1 20.26962454 -6.271965614 24.87483765 1.388316534 1.179446699 0.10395991 0.209402426 1206.577588 2851290.051 0.075886722 0.067640865 5.35E-07 6.271965614 -0.208869835 QKYLS(ph)FTPPEK ddPTM_HeLa_A486_30min_R1 2 QKYLSFTPPEK 11 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 QKYLS(0.977)FT(0.023)PPEK;QKYLS(0.998)FT(0.002)PPEK ; 131.86 1.81E-05 795010000 1323370 1042580 580820 446040 1020150 1046530 1432040 1299140 766000 1551920 TRUE FALSE FALSE 1230608.597 959962.1638 805729.0589 1038403.662 892193.2745 917419.7689 1073728.445 1003354.182 832397.4968 1163309.131 1.057851748 0.825199544 0.692618185 0.892629168 0.766944272 0.788629389 0.922994944 0.862500049 0.715542821 1 20.14980309 -9.538198628 14.2043986 1.000003329 0.83312488 0.189635091 0.101475445 0 0 0.09671751 0.023457442 2.90E-10 9.538198628 -0.166878449 QKYLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_HeLa_A485_30min_R1 2 QKYLSFTPPEKDGFPSGTPALNAK 24 2 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 QKYLS(0.995)FT(0.005)PPEKDGFPSGTPALNAK;QKYLS(0.994)FT(0.006)PPEKDGFPSGTPALNAK ; 185.05 7.25E-21 2302200000 725790 916450 482327 645630 982850 1244970 1954530 2858480 712410 990730 TRUE FALSE FALSE 887239.4816 1023620.855 660759.8286 680899.1321 884994.003 1310154.704 1536928.698 2157433.298 855384.1524 743759.244 1.192912207 1.376279843 0.888405534 0.915483253 1.189893114 1.761530649 2.066433071 2.9007146 1.150082045 1 19.50447617 -6.297207731 3.308044916 1.933952451 1.093747519 0.278684908 0.510571948 0.272530451 6.141021763 0.183517567 0.16646006 5.04E-07 6.297207731 -0.840204932 QKYLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_HeLa_A486_30min_R1 1 QKYLSFTPPEKDGFPSGTPALNAK 24 2 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 QKYLS(0.998)FT(0.002)PPEKDGFPSGTPALNAK 190.23 4.09E-21 772840000 416680 273990 142310 188030 347010 313400 518370 480690 208470 530490 TRUE FALSE FALSE 387472.8837 252278.0345 197416.2432 437743.3425 303484.7701 274735.8944 388668.3432 371247.3804 226540.3475 397651.8511 0.974402314 0.634419364 0.496454984 1.100820583 0.763192147 0.69089555 0.977408611 0.933599025 0.569695191 1 18.60114636 -5.25023176 24.99502901 0.852997035 0.695024971 0.135356573 0.184596282 1556.982155 3472346.269 0.049753582 0.085137386 5.62E-06 5.25023176 -0.157972064 QLASGLLLVTGPLVLNR ddPTM_HeLa_A486_30min_R1 1 QLASGLLLVTGPLVLNR 17 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 96.591 0.00098165 0 5304.7 7630 6569.4 5436.6 23977 6181.6 7998 8456.3 6256.1 8994.9 FALSE FALSE TRUE 4932.867923 7025.371012 9113.247615 12656.67955 20969.58108 5418.977042 5996.815806 6530.98509 6798.383785 6742.518493 0.731606139 1.041950574 1.351608842 1.87714421 3.110051697 0.803702214 0.889402945 0.968626945 1.008285523 1 12.71907186 QLASGLLLVTGPLVLNRVPLR ddPTM_HeLa_A486_30min_R1 1 QLASGLLLVTGPLVLNRVPLR 21 1 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 123.53 1.37E-08 6778700 9198.4 14240 12428 3948.9 13128 9714.6 12425 12925 9786.2 10376 FALSE FALSE TRUE 8553.639661 13111.57054 17240.45443 9193.238766 11481.36383 8516.111423 9316.133582 9982.259651 10634.4757 7777.782064 1.099753065 1.685772426 2.216628634 1.18198719 1.476174536 1.094928008 1.197787943 1.283432676 1.367288979 1 12.9251431 QLASGLLLVTGPLVLNRVPLRR ddPTM_HeLa_A485_30min_R1 2 QLASGLLLVTGPLVLNRVPLRR 22 2 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 148.91 1.63E-12 106829000 35024 53820 42496 15805.7 51251 47913 66617 83449 25595.3 27926.2 FALSE FALSE TRUE 42814.96797 60113.78083 58217.03881 16669.12537 46148.27049 50421.65059 52383.73374 62983.00191 30732.04194 20964.71228 2.042239712 2.867379243 2.776906166 0.795103941 2.201235574 2.405072386 2.498662182 3.004238792 1.465893809 1 14.35567541 -5.987114947 24.94407118 2.23504539 2.130344967 0 0.745579291 2878.667576 5572755.121 0.235420899 0.266788857 1.03E-06 5.987114947 -0.104700423 QLASGLLLVTGPLVLNRVPLRR ddPTM_HeLa_A486_30min_R1 2 QLASGLLLVTGPLVLNRVPLRR 22 2 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 115.46 1.16E-06 52869000 30353 22427 20329.7 12376.7 37076 18916.8 28981 31117 14709.8 32694 FALSE FALSE TRUE 28225.41144 20649.80284 28201.90429 28813.58308 32425.58236 16583.03755 21729.64727 24032.33838 15984.85731 24507.2096 1.151718694 0.842601144 1.150759501 1.175718638 1.323103809 0.676659555 0.886663461 0.980623203 0.652251218 1 14.58091861 -6.266781273 24.99946993 0.840992441 1.116710258 0.472558607 0.152674699 443.9246858 2077511.616 0.054025202 0.048999437 5.41E-07 6.266781273 0.275717817 QLATK(ac)AAR ddPTM_HeLa_A485_30min_R1 2 QLATKAAR 8 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 1 ; QLATK(1)AAR;QLATK(1)AAR 204.62 1.43E-09 13587800000 1863830 2219690 3389300 3337600 3682500 1373980 2511600 6407500 3499300 16814000 FALSE TRUE FALSE 2278432.553 2479263.437 4643143.111 3519924.637 3315857.37 1445919.468 1974976.142 4836050.578 4201577.413 12622579.24 0.180504516 0.196414963 0.367844243 0.278859381 0.262692537 0.114550239 0.156463755 0.383126973 0.332862035 1 23.5895034 -8.593469628 1.066742809 1.001399244 0.231976151 0.895403773 0.077684182 0.800112364 1.162948035 0.082327714 0.025259845 2.55E-09 8.593469628 -0.769423093 QLATK(ac)AAR ddPTM_HeLa_A486_30min_R1 2 QLATKAAR 8 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 1 ; QLATK(1)AAR;QLATK(1)AAR 194.22 3.49E-09 10086600000 3188200 5501300 4089200 1427960 5713000 4532100 4739300 4219000 4032900 2692800 FALSE TRUE FALSE 2964723.644 5065356.953 5672647.753 3324363.045 4996422.268 3972975.581 3553477.013 3258425.8 4382475.019 2018505.353 1.468771752 2.509459262 2.810320887 1.646942893 2.475307911 1.96827597 1.760449636 1.614276522 2.171148574 1 20.94485598 -9.296478513 0.287780684 0.610501329 2.267477858 0.374298699 0.414986805 8.020038523 0.848022843 3.732254584 0.549922715 5.05E-10 9.296478513 1.656976529 QLEAIDQLHLEYAK ddPTM_HeLa_A485_30min_R1 2 QLEAIDQLHLEYAK 14 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 117.73 0.00017951 50064000 41814 42987 43199 51191 57596 47348 54544 57407 45592 71785 FALSE FALSE TRUE 51115.38004 48013.95571 59180.10776 53987.43471 51861.54001 49827.06807 42890.22882 43327.84324 54741.89621 53890.32061 0.948507626 0.890956951 1.098158391 1.001802069 0.962353525 0.924601441 0.795880008 0.804000473 1.015802014 1 15.71773855 -6.318442907 3.203184017 0.885513756 0.984533345 0.145368143 0.082935942 0.40229526 8.24409152 0.031482146 0.028158809 4.80E-07 6.318442907 0.099019589 QLEEAEEESQR ddPTM_HeLa_A485_30min_R1 1 QLEEAEEESQR 11 0 P35749-4;P35749-3;P35749;P35749-2 P35749-4 MYH11 Myosin-11 0 0 92.866 0.0034081 0 40874 81317 137670 34516 165000 85549 71901 97959 105100 44744 FALSE FALSE TRUE 49966.28029 90826.31579 188599.8619 36401.52168 148572.0206 90028.21336 56538.76397 73934.40166 126192.606 33590.14425 1.487528006 2.703957301 5.614738076 1.083696498 4.423083734 2.680197283 1.683195033 2.201074253 3.756834297 1 15.03575037 -6.522441416 24.92354699 2.249126847 3.122234159 0.084530616 1.380714613 42.9173133 2446209.546 0.510676374 0.40019634 3.00E-07 6.522441416 0.873107312 QLEEAEEESQR ddPTM_HeLa_A486_30min_R1 2 QLEEAEEESQR 11 0 P35749-4;P35749-3;P35749;P35749-2 P35749-4 MYH11 Myosin-11 0 0 ; ; 147.37 3.57E-05 815640000 563710 670700 707960 230204 1013400 574260 595180 675210 607440 523780 FALSE FALSE TRUE 524196.84 617551.2894 982101.0718 535926.5459 886289.9224 503413.6398 446259.6688 521479.4227 660093.3883 392622.0788 1.33511809 1.572889867 2.501390332 1.364993399 2.257361392 1.282183726 1.13661379 1.328196887 1.681243679 1 18.58278178 -6.306912869 24.15499604 1.296844944 1.807474149 0.322811642 0.376909642 372.3428677 197782.9184 0.130505984 0.11509609 4.93E-07 6.306912869 0.510629205 QLEEPGAGTPS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 QLEEPGAGTPSPVR 14 0 Q63ZY6;Q96P11-2;Q63ZY6-4;Q63ZY6-5;Q96P11-5;Q96P11;Q96P11-4 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 0 QLEEPGAGT(0.001)PS(0.999)PVR;QLEEPGAGTPS(1)PVR;QLEEPGAGT(0.002)PS(0.998)PVR;QLEEPGAGTPS(1)PVR ;;; 267.63 3.22E-42 1830490000 1196470 1591500 1577860 1131760 1967400 1486150 1635060 1805030 1369850 1572570 TRUE FALSE FALSE 1462620.624 1777612.081 2161576.074 1193585.183 1771518.748 1563962.516 1285716.074 1362343.562 1644766.33 1180557.24 1.238923937 1.505739849 1.830979474 1.011035418 1.500578446 1.324766359 1.089075591 1.153983489 1.393211845 1 20.17103656 -6.171583227 0.867557451 1.164578949 1.473491374 0.221985563 0.219027579 0.937558272 1.536997566 0.134410547 0.137845479 6.74E-07 6.171583227 0.308912425 QLEEPGAGTPS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 QLEEPGAGTPSPVR 14 0 Q63ZY6;Q96P11-2;Q63ZY6-4;Q63ZY6-5;Q96P11-5;Q96P11;Q96P11-4 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 0 QLEEPGAGTPS(1)PVR;QLEEPGAGTPS(1)PVR;QLEEPGAGTPS(1)PVR;QLEEPGAGT(0.001)PS(0.999)PVR ;;; 270.74 2.09E-43 1731340000 1569910 1827100 1502130 566470 2134820 1531830 1678560 1737480 1438550 1588050 TRUE FALSE FALSE 1459867.416 1682313.942 2083794.964 1318770.788 1867050.969 1342848.389 1258566.534 1341893.733 1563244.672 1190391.944 1.226375417 1.413243723 1.750511649 1.107845861 1.568433808 1.128072478 1.057270709 1.12727051 1.313218458 1 20.18300524 -6.283457194 23.4561894 1.128877268 1.415046243 0.391991443 0.179376298 392.6074407 418253.5769 0.061889265 0.054640355 5.21E-07 6.283457194 0.286168975 QLEES(ph)VSEKEQQLLSTLK ddPTM_HeLa_A486_30min_R1 2 QLEESVSEKEQQLLSTLK 18 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 QLEES(0.994)VS(0.006)EKEQQLLSTLK;QLEES(0.99)VS(0.01)EKEQQLLSTLK ; 214.16 1.46E-26 159010000 149132 144868 77353 79973 151332 166538 204990 210080 107508 187207 TRUE FALSE FALSE 138678.6169 133388.1321 107306.1532 186181.1856 132350.5294 145992.2348 153699.3338 162249.37 116826.88 140329.1487 0.98823814 0.950537599 0.764674725 1.326746349 0.943143536 1.040355736 1.09527732 1.15620576 0.832520407 1 17.09845519 -5.220682725 24.99942755 1.059072441 0.906088988 0.219141674 0.134060617 787.8370658 483244.7196 0.034938652 0.060514663 6.02E-06 5.220682725 -0.152983452 QLEMENS(ph)PLLSPR ddPTM_HeLa_A485_30min_R1 2 QLEMENSPLLSPR 13 0 Q9HCM4-4;Q9HCM4-3;Q9HCM4 Q9HCM4-4 EPB41L5 Band 4.1-like protein 5 1 0 QLEMENS(1)PLLSPR;QLEMENS(1)PLLSPR ; 254.72 3.53E-41 177387000 123804 166000 139494 123981 169440 167622 165311 190115 135565 210704 TRUE FALSE FALSE 151343.7727 185412.256 191098.6354 130753.7681 152569.9587 176398.4287 129990.9544 143488.9982 162771.652 158179.3705 0.956785782 1.172164584 1.208113516 0.826617072 0.964537652 1.115179736 0.821794612 0.907128393 1.029032114 1 17.27120193 -5.254392812 24.99977254 0.95006288 1.11833562 0.335155362 0.103341152 623.2461268 2211144.593 0.028462181 0.047992982 5.57E-06 5.254392812 0.16827274 QLEMENS(ph)PLLSPR ddPTM_HeLa_A486_30min_R1 2 QLEMENSPLLSPR 13 0 Q9HCM4-4;Q9HCM4-3;Q9HCM4 Q9HCM4-4 EPB41L5 Band 4.1-like protein 5 1 0 QLEMENS(1)PLLSPR;QLEMENS(1)PLLSPR ; 156.17 2.37E-08 144501000 116733 135773 150442 49875 194602 148683 154509 150857 143366 155837 TRUE FALSE FALSE 108550.6195 125013.853 208697.1714 116111.5205 170193.2026 130340.0032 115849.214 116510.1543 155793.0803 116814.4009 0.929257169 1.070192134 1.786570575 0.993982931 1.456953948 1.115787113 0.991737432 0.99739547 1.333680429 1 16.83385861 -6.499855024 24.17542842 1.076668541 1.256717868 0.094230208 0.248459468 1208.096863 1268532.118 0.087754933 0.076816268 3.16E-07 6.499855024 0.180049326 QLEMGGLS(ph)PAGDMSHVDAAAAAVPLSYQHPSVDQK ddPTM_HeLa_A486_30min_R1 1 QLEMGGLSPAGDMSHVDAAAAAVPLSYQHPSVDQK 35 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 QLEMGGLS(0.985)PAGDMS(0.015)HVDAAAAAVPLSYQHPSVDQK 180.31 5.62E-21 105110000 75647 72394 75112 10494 101950 65244 74963 72215 68814 36566 TRUE FALSE FALSE 70344.53594 66657.23579 104197.378 24430.56234 89162.48035 57194.85863 56206.46452 55773.22094 74778.85293 27409.6356 2.566416314 2.431890623 3.801487167 0.89131292 3.252961173 2.086669793 2.050609696 2.034803445 2.728195808 1 14.74239553 -10.33244561 0.228608858 4.25E-16 2.698611022 0.253933548 0.737197215 29.85552335 1.351921699 20.9224542 1.46512594 4.65E-11 10.33244561 2.698611022 QLEMILNKPGLK ddPTM_HeLa_A485_30min_R1 2 QLEMILNKPGLK 12 1 Q04828;H0Y804;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;P42330-2 Q04828;A0A0A0MSS8 AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ; ; 178.32 2.55E-09 107621000 201735 222038 163859 223420 294180 313060 409710 432940 255430 404110 FALSE FALSE TRUE 246610.2548 248003.4126 224477.2628 235624.8689 264890.4063 329451.3375 322172.1115 326760.7862 306692.4581 303372.8141 0.812895036 0.817487267 0.739938625 0.776684192 0.873151429 1.085961966 1.06196764 1.077093171 1.010942457 1 18.21073228 -6.095887083 3.365315785 1.05274419 0.787421308 0.932698573 0.033209327 0.059635374 1.275430125 0.011828628 0.01209788 8.02E-07 6.095887083 -0.265322882 QLEMILNKPGLK ddPTM_HeLa_A486_30min_R1 2 QLEMILNKPGLK 12 1 Q04828;H0Y804;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;P42330-2 Q04828;A0A0A0MSS8 AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ; ; 183.79 1.62E-09 132593000 332710 372170 195312 127072 429090 445920 489910 481010 392460 585550 FALSE FALSE TRUE 309388.7471 342677.8938 270942.037 295830.0379 375269.5311 390906.9242 367329.3363 371494.5234 426478.7488 438924.4687 0.704879243 0.780721783 0.617286245 0.673988485 0.85497519 0.890601805 0.836885074 0.846374604 0.971644962 1 18.74361317 -5.841436431 4.517368943 0.892515667 0.694803127 0.732786334 0.061107113 0.119673311 4.498752268 0.019499186 0.02262261 1.44E-06 5.841436431 -0.197712541 QLESLWSDS(ph)PAPPGPQAGPPSRPPR ddPTM_HeLa_A485_30min_R1 1 QLESLWSDSPAPPGPQAGPPSRPPR 25 1 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 QLESLWS(0.005)DS(0.994)PAPPGPQAGPPSRPPR 73.317 0.0043881 135810000 136070 152410 137470 147490 218310 177690 222400 285520 161600 193660 TRUE FALSE FALSE 166338.3021 170233.0237 188325.8736 155547.0052 196574.2899 186993.5736 174882.4232 215495.7723 194031.6377 145384.126 1.144129738 1.170918919 1.295367512 1.069903637 1.352102841 1.286203513 1.202899023 1.482251042 1.33461364 1 17.14951023 -5.778714924 24.9999798 1.297278186 1.17908895 0.129201975 0.127573552 433.5129296 627347.4839 0.038161409 0.043372224 1.66E-06 5.778714924 -0.118189236 QLFHGT(ph)PVTIENFLNWK ddPTM_HeLa_A485_30min_R1 2 QLFHGTPVTIENFLNWK 17 0 E5RGS5;E5RGQ3;Q9H446-2;Q9H446 E5RGS5 RWDD1 RWD domain-containing protein 1 1 0 QLFHGT(0.997)PVT(0.003)IENFLNWK;QLFHGT(0.999)PVT(0.001)IENFLNWK ; 100.28 0.00053705 90175000 85073 98752 61957 69796 95529 85893 99275 125367 67967 82913 TRUE FALSE FALSE 103997.1954 110300.1874 84877.47255 73608.77875 86017.79734 90390.22466 78064.08525 94620.54668 81607.35347 62244.315 1.670790262 1.772052393 1.363618068 1.182578341 1.381938211 1.452184423 1.254156066 1.52014761 1.311081236 1 15.92565446 -4.7935117 6.948707065 1.326962341 1.721889518 0.580604113 0.139825065 0.110240389 16.92294778 0.034818902 0.075921234 1.61E-05 4.7935117 0.394927178 QLFHGT(ph)PVTIENFLNWK ddPTM_HeLa_A486_30min_R1 2 QLFHGTPVTIENFLNWK 17 0 E5RGS5;E5RGQ3;Q9H446-2;Q9H446 E5RGS5 RWDD1 RWD domain-containing protein 1 1 0 QLFHGT(1)PVTIENFLNWK;QLFHGT(1)PVTIENFLNWK ; 228.01 2.22E-34 95672000 139645 134675 93384 54918 133067 112792 138282 132879 90154 133555 TRUE FALSE FALSE 129856.6066 124002.8625 129544.7857 127851.8794 116376.4961 98876.86983 103682.381 102625.3524 97968.62131 100111.9587 1.297113834 1.238641858 1.293999112 1.277088982 1.162463482 0.987662924 1.035664294 1.025105829 0.978590596 1 16.61125479 -6.041537752 2.695021941 1.008173133 1.275504744 0.968146819 0.023222292 0.045343654 0.656375183 0.008218424 0.008713827 9.09E-07 6.041537752 0.267331612 QLFHPEQLITGK ddPTM_HeLa_A485_30min_R1 4 QLFHPEQLITGK 12 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;F8VX09;C9K0S6;P68363;P68363-2;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 161.48 5.05E-07 1190515000 2197640 2407580 1879490 2597710 2570790 2296880 2736230 2504390 2109560 3231840 FALSE FALSE TRUE 2686497.436 2689125.538 2574791.563 2739616.32 2314833.121 2417141.085 2151612.108 1890184.426 2532929.342 2426201.766 1.107285253 1.10836847 1.061243793 1.129179097 0.954097534 0.996265488 0.886823239 0.779071408 1.043989572 1 21.2102681 -5.966378856 1.723402187 0.918302727 1.101840762 0.508167792 0.07319396 0.272987932 1.650947777 0.027382356 0.031036478 1.08E-06 5.966378856 0.183538036 QLFHPEQLITGK ddPTM_HeLa_A486_30min_R1 4 QLFHPEQLITGK 12 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;F8VX09;C9K0S6;P68363;P68363-2;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 160.69 4.35E-07 970433000 2156704 2284542 1468552 2202556 3402919 2224253 2403679 2252741 1922164 2621844 FALSE FALSE TRUE 2005530.187 2103506.572 2037214.664 5127661.679 2976093.168 1949847.279 1802253.091 1739841.051 2088778.723 1965317.197 1.020461323 1.070314031 1.036583136 2.609075872 1.514306786 0.992128539 0.917029115 0.88527239 1.062820153 1 20.90633075 -6.276121888 9.1194127 0.960449878 1.470546638 0.233697682 0.432411903 0.426329836 241.5976582 0.163960812 0.148764579 5.30E-07 6.276121888 0.51009676 QLFHPEQLITGKEDAANNYAR ddPTM_HeLa_A485_30min_R1 4 QLFHPEQLITGKEDAANNYAR 21 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;F8VRZ4;F8VS66;F8VWV9;F8VX09;C9K0S6;P68363;P68363-2;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 210.92 8.97E-30 1323276000 823297 1453577 1032565 627809 1491224 1730940 1911090 2945390 970761 1017555 FALSE FALSE TRUE 1006436.577 1623560.186 1414553.762 662104.616 1342752.503 1821569.342 1502770.009 2223028.484 1165583.828 763897.2652 1.317502527 2.125364574 1.851759165 0.866745629 1.75776582 2.384573718 1.967240986 2.910114469 1.525838462 1 19.5430191 -6.009031639 24.95054328 2.076833258 1.567859469 0.088803349 0.566558696 817.8968064 2259504.129 0.175253332 0.188714771 9.79E-07 6.009031639 -0.508973789 QLFHPEQLITGKEDAANNYAR ddPTM_HeLa_A486_30min_R1 1 QLFHPEQLITGKEDAANNYAR 21 1 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;F8VRZ4;F8VS66;F8VWV9;F8VX09;C9K0S6;P68363;P68363-2;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 141.47 8.61E-09 388840000 464620 368390 327430 190600 596490 352600 519160 543720 294070 529700 FALSE FALSE TRUE 432052.5373 339197.4347 454219.6649 443726.4324 521672.6622 309099.797 389260.6769 419926.8253 319560.2244 397059.6722 1.08812999 0.854273195 1.143958192 1.117530848 1.313839452 0.778471899 0.980358128 1.057591225 0.804816623 1 18.59899631 -6.277116659 24.99734545 0.931353954 1.092719868 0.316885843 0.130937735 1189.480314 1896614.869 0.047510547 0.042033888 5.28E-07 6.277116659 0.161365914 QLFSSLFSGILK ddPTM_HeLa_A485_30min_R1 2 QLFSSLFSGILK 12 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ; ; 240.05 6.48E-29 73846000 117070 133435 118089 137697 165763 106277 161302 160668 115032 216520 FALSE FALSE TRUE 143111.8176 149039.0625 161775.0352 145219.0384 149259.0537 111841.4994 126838.51 121263.9211 138117.8673 162545.5488 0.880441321 0.916906453 0.995259707 0.8934052 0.918259865 0.688062517 0.780325951 0.746030402 0.84971793 1 17.31048452 -6.13905474 9.838860937 0.794990181 0.9238383 0.291396595 0.081873684 0.404390747 30.73741521 0.025751643 0.025762302 7.26E-07 6.13905474 0.128848119 QLFSSLFSGILK ddPTM_HeLa_A486_30min_R1 2 QLFSSLFSGILK 12 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ; ; 234.3 1.07E-28 73927000 167402 145463 106810 44026 123286 129613 158115 143699 132189 158487 FALSE FALSE TRUE 155667.9843 133935.9821 148169.6925 102494.753 107822.3203 113622.6659 118552.9546 110981.8746 143647.249 118800.8236 1.310327484 1.127399441 1.247210987 0.862744464 0.907588996 0.956413116 0.997913575 0.934184387 1.209143544 1 16.85818531 -5.249036009 24.98367574 0.97500268 1.218221339 0.579447098 0.096282143 547.3947694 1102595.994 0.026007798 0.044645765 5.64E-06 5.249036009 0.24321866 QLGAQS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 QLGAQSPGR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QLGAQS(1)PGR 126.48 0.00028425 397420000 212060 288090 232810 197160 206660 189750 207620 190450 176020 209080 TRUE FALSE FALSE 259232.0154 321779.6195 318936.107 207930.3516 186084.2048 199685.0166 163260.2909 143741.8389 211345.5994 156960.2038 1.651577974 2.050071366 2.03195523 1.324732935 1.185550224 1.272201563 1.040138117 0.915785246 1.346491622 1 17.26003929 -5.392199961 3.545718614 1.131739895 1.924993197 0.83055023 0.158189316 0.093285287 2.12781831 0.046937415 0.072420322 4.05E-06 5.392199961 0.793253302 QLGAQS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 QLGAQSPGR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QLGAQS(1)PGR 118.31 0.0005434 344820000 206930 257920 189320 67129 191400 212280 206730 174550 211300 233370 TRUE FALSE FALSE 192425.2756 237481.4799 262629.7742 156279.7045 167392.8273 186091.0519 155003.9674 134808.7754 229615.6541 174932.633 1.099996452 1.357559626 1.501319506 0.89337079 0.956898804 1.063786949 0.886078056 0.770632518 1.312594741 1 17.41643992 -5.271572419 24.89528278 0.971978404 1.323418642 0.474190271 0.161953989 519.7360171 1276908.654 0.044835148 0.067384953 5.35E-06 5.271572419 0.351440238 QLGPRS(ph)PR ddPTM_HeLa_A485_30min_R1 3 QLGPRSPR 8 1 Q9NXG0-2;Q9NXG0;Q9NXG0-3 Q9NXG0-2 CNTLN Centlein 1 0 QLGPRS(1)PR;QLGPRS(1)PR;QLGPRS(1)PR ;; 52.716 0.023977 389536000 244732 562710 493850 244777 666090 609540 694320 1078720 426270 375200 TRUE FALSE FALSE 299171.7891 628514.0396 676545.6658 258148.5477 599771.7408 641454.5719 545972.8599 814162.2286 511818.479 281669.545 1.06213751 2.231387989 2.40191273 0.916494354 2.129345367 2.277330237 1.938345375 2.89048725 1.817088457 1 18.10364406 -4.252862655 23.91855772 2.011284082 1.062136612 0.172169941 0.576458662 1007.40576 2809311.893 0.139809164 1.535438259 5.59E-05 4.252862655 -0.94914747 QLGPRS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QLGPRSPR 8 1 Q9NXG0-2;Q9NXG0;Q9NXG0-3 Q9NXG0-2 CNTLN Centlein 1 0 QLGPRS(1)PR 52.278 0.02442 72646000 12674 13672 17714 8246.9 25212 17383 23003 22173 11658 15317 TRUE FALSE FALSE 11785.61805 12588.58093 24573.3352 19199.19998 22049.67587 15238.4622 17247.4061 17124.69193 12668.52483 11481.5235 1.026485557 1.096420778 2.140250394 1.672182265 1.920448611 1.327216044 1.502187937 1.491499968 1.103383608 1 13.48702647 -7.793424223 2.923638751 0.997532001 1.545626366 0.257500317 0.32112546 0.36186087 5.836186317 0.319158056 0.089135466 1.61E-08 7.793424223 0.548094365 QLHLEGAS(ph)LELS(ph)DDDTESK ddPTM_HeLa_A486_30min_R1 2 QLHLEGASLELSDDDTESK 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 2 0 QLHLEGAS(1)LELS(1)DDDTESK;QLHLEGAS(1)LELS(1)DDDTESK ; 172.32 8.90E-13 104588000 108161 117668 49792 57919 93200 153861 186802 190650 97816 215697 TRUE FALSE FALSE 100579.4724 108343.5591 69072.79588 134838.3591 81509.98694 134879.1942 140062.1638 147243.1569 106294.7696 161685.0672 0.622070264 0.670090077 0.427205784 0.833956786 0.504128107 0.834209346 0.866265303 0.910678762 0.657418594 1 17.30282692 -6.334025591 7.909970972 0.849915006 0.617077198 0.474258573 0.127441079 0.289008505 28.6702519 0.042601743 0.037548817 4.63E-07 6.334025591 -0.232837808 QLHLEGASLELS(ph)DDDTESK ddPTM_HeLa_A485_30min_R1 6 QLHLEGASLELSDDDTESK 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGAS(0.227)LELS(0.28)DDDT(0.28)ES(0.213)K ;;;;; 382.58 1.06E-145 11585800000 3737427 3329910 2324649 4956892 3599397 3180962 4555862 3669040 2920003 6839209 TRUE FALSE FALSE 4568804.742 3719314.008 3184633.402 5227674.458 3241028.396 3347512.252 3582464.866 2769202.187 3506020.818 5134320.063 0.88985585 0.724402445 0.620263903 1.018182426 0.63124783 0.651987451 0.697748645 0.539351297 0.682859809 1 22.2917418 -4.26632712 5.669756298 0.713861864 0.895212394 0.085146933 0.150198687 0.312276161 42.21722306 0.036555814 0.219456147 5.42E-05 4.26632712 0.18135053 QLHLEGASLELS(ph)DDDTESK ddPTM_HeLa_A486_30min_R1 6 QLHLEGASLELSDDDTESK 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(1)DDDTESK ;;;;; 404.11 2.12E-163 15994900000 4891440 4548820 2306908 1293397 3624740 4630010 5595850 4834710 3790900 6226500 TRUE FALSE FALSE 4548575.315 4188354.937 3200204.559 3011093.581 3170091.31 4058806.441 4195709.143 3733952.074 4119498.264 4667343.872 0.974553288 0.897374406 0.68565862 0.645140719 0.679206717 0.869618042 0.898950079 0.800016492 0.882621546 1 22.15417033 -8.105438689 0.705680402 0.998537173 0.786328627 0.258517268 0.10259777 1.31500922 1.468771854 0.115752115 0.044849254 7.84E-09 8.105438689 -0.212208546 QLHVLVPQS(ph)PPTDLPGLTR ddPTM_HeLa_A485_30min_R1 2 QLHVLVPQSPPTDLPGLTR 19 0 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 QLHVLVPQS(0.992)PPT(0.008)DLPGLTR;QLHVLVPQS(1)PPTDLPGLTR ; 140.11 3.51E-07 345870000 206236 323710 284520 249850 329580 332580 384130 422430 284430 309740 TRUE FALSE FALSE 252112.4867 361565.0686 389775.7879 263498.6728 296765.858 349993.3745 302057.4874 318828.3802 341512.4921 232527.5183 1.084226454 1.554934535 1.676256602 1.133193502 1.276261236 1.505169698 1.299018239 1.371142575 1.468697101 1 17.82704194 -10.16205218 4.288532272 0.999904779 1.380078712 0.290203497 0.175415639 24789847.29 29370879.45 18228.34458 0.042384305 6.89E-11 10.16205218 0.380173933 QLHVLVPQS(ph)PPTDLPGLTR ddPTM_HeLa_A486_30min_R1 1 QLHVLVPQSPPTDLPGLTR 19 0 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 QLHVLVPQS(0.959)PPT(0.041)DLPGLTR 94.542 0.00032809 170640000 133580 132440 109820 56240 165530 127300 138610 141030 107260 150990 TRUE FALSE FALSE 124216.7318 121944.9721 152345.2451 130929.5622 144767.6839 111595.0203 103928.3119 108920.5477 116557.3832 113181.1212 1.097503987 1.077432091 1.346030534 1.156814501 1.279079782 0.985986171 0.918247768 0.962356146 1.02983061 1 16.78827381 -6.303148787 10.47948714 0.972960458 1.191681695 0.644792707 0.078638067 0.49463086 122.8320517 0.028456634 0.025144971 4.98E-07 6.303148787 0.218721237 QLIMS(ph)PLITSHVIGENEPLTSVLNK ddPTM_HeLa_A485_30min_R1 1 QLIMSPLITSHVIGENEPLTSVLNK 25 0 Q9H7D0;H0Y7N4 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 QLIMS(0.986)PLIT(0.007)S(0.007)HVIGENEPLTSVLNK 95.741 0.0016364 28071000 16625 21808 17931 18924 27818 23139 29691 33401 17974 27850 TRUE FALSE FALSE 20323.17389 24358.2559 24564.42307 19957.7702 25048.34225 24350.52226 23347.2753 25209.35238 21581.21693 20907.50754 0.972051492 1.165048289 1.174909205 0.95457434 1.198054919 1.164678392 1.116693382 1.205755986 1.032223324 1 14.35173346 -4.250255035 24.17263016 1.120327491 0.972051354 0.197005534 0.083674407 1642.608782 3550051.188 0.019918982 0.292718543 5.62E-05 4.250255035 -0.148276137 QLIMS(ph)PLITSHVIGENEPLTSVLNK ddPTM_HeLa_A486_30min_R1 1 QLIMSPLITSHVIGENEPLTSVLNK 25 0 Q9H7D0;H0Y7N4 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 QLIMS(0.991)PLIT(0.005)S(0.005)HVIGENEPLTSVLNK 97.771 0.0013393 40254000 33148 30716 23692 10212 38525 35148 42395 40482 27492 40034 TRUE FALSE FALSE 30824.49638 28281.95229 32866.17689 23774.05209 33692.83527 30811.79712 31787.32259 31265.13232 29875.0287 30009.22582 1.02716733 0.942441916 1.095202425 0.792224772 1.122749233 1.026744152 1.059251671 1.04185068 0.995528138 1 14.87311848 QLIVGVNK ddPTM_HeLa_A485_30min_R1 2 QLIVGVNK 8 0 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ; ; 189.62 8.87E-07 970140000 2192900 2188500 2175700 2380200 3024000 2472000 3461600 3215000 2221600 3100400 FALSE FALSE TRUE 2680703.04 2444426.038 2980581.968 2510224.299 2722919.942 2601430.098 2722000.881 2426516.209 2667454.742 2327527.339 1.151738583 1.050224415 1.280578715 1.078494013 1.169876674 1.117679717 1.169481809 1.042529627 1.146046578 1 21.15036668 -8.773581252 0.463521979 0.987499161 1.147353331 0.290474007 0.064920605 3.767648142 1.23017934 0.159884755 0.035248801 1.68E-09 8.773581252 0.159854171 QLIVGVNK ddPTM_HeLa_A486_30min_R1 2 QLIVGVNK 8 0 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ; ; 211.23 5.12E-11 856170000 1984840 2293200 1738790 710720 2485500 2457600 2743600 2502800 2068020 2460200 FALSE FALSE TRUE 1845712.966 2111478.48 2412096.054 1654592.078 2173745.414 2154406.299 2057122.261 1932967.076 2247277.639 1844149.907 1.000847577 1.144960327 1.30797179 0.897211269 1.1787249 1.168238163 1.115485381 1.048161578 1.218598136 1 20.8145245 -10.86919226 2.724836186 0.946975406 1.120627964 0.097139478 0.109758872 38468377.25 26913130.04 13227471.79 0.026369185 1.35E-11 10.86919226 0.173652558 QLLDS(ph)DEEQEEDEGR ddPTM_HeLa_A485_30min_R1 4 QLLDSDEEQEEDEGR 15 0 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR ;;; 315.2 5.41E-78 3572320000 1189760 1595610 1515830 1247330 1521460 1355100 1616920 1481920 1260860 1685050 TRUE FALSE FALSE 1454418.007 1782202.71 2076598.596 1315468.479 1369978.1 1426050.941 1271451.833 1118476.796 1513903.037 1264998.046 1.149739331 1.408858073 1.641582453 1.039897637 1.082988313 1.127314738 1.005101816 0.884172746 1.196763142 1 20.27070373 -5.289352149 24.70486847 1.046178818 1.400939757 0.588707818 0.134830308 412.83981 365392.8518 0.038347396 0.056892981 5.14E-06 5.289352149 0.354760939 QLLDS(ph)DEEQEEDEGR ddPTM_HeLa_A486_30min_R1 4 QLLDSDEEQEEDEGR 15 0 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR ;;; 346.63 5.77E-104 4528800000 1268900 1446020 1104800 316418 1393360 1166740 1216690 1250620 1114490 1330010 TRUE FALSE FALSE 1179956.663 1331432.109 1532608.148 736637.0949 1218591.796 1022799.481 912261.2932 965881.1268 1211094.891 996966.8391 1.18354655 1.335482843 1.537270938 0.738878231 1.222299226 1.025911235 0.915036747 0.968819713 1.214779512 1 19.92718599 -5.25178708 24.9920707 1.016218368 1.350438372 0.508169202 0.153178912 560.7776606 1451982.489 0.040770601 0.069502133 5.60E-06 5.25178708 0.334220005 QLLGLQPISTVS(ph)PLHR ddPTM_HeLa_A485_30min_R1 2 QLLGLQPISTVSPLHR 16 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 QLLGLQPIS(0.107)T(0.26)VS(0.632)PLHR;QLLGLQPISTVS(1)PLHR ; 189.51 4.15E-18 526630000 284616 402551 436550 297802 482280 403770 457410 498160 353130 461270 TRUE FALSE FALSE 347927.8473 449625.8377 598048.0114 314070.1692 434262.5098 424910.7729 359680.6168 375985.4789 423999.9519 346283.878 1.004747461 1.298431334 1.727045494 0.90697312 1.254065053 1.227059069 1.038687157 1.085772405 1.224428796 1 18.4015957 -5.299825926 24.99976621 1.117355903 1.338911418 0.241124219 0.192707264 820.3131308 534238.535 0.05452884 0.080880965 5.01E-06 5.299825926 0.221555515 QLLGLQPISTVS(ph)PLHR ddPTM_HeLa_A486_30min_R1 2 QLLGLQPISTVSPLHR 16 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 QLLGLQPIST(0.001)VS(0.999)PLHR;QLLGLQPISTVS(1)PLHR ; 159.04 3.42E-09 549180000 538460 500560 439740 134746 614110 406750 500920 525360 419850 538870 TRUE FALSE FALSE 500716.7346 460893.8026 610019.1046 313695.4977 537082.5975 356569.3205 375584.5178 405746.9965 456242.936 403933.4445 1.239602072 1.141014216 1.510197071 0.776601943 1.329631415 0.882742752 0.929817827 1.00448973 1.129500273 1 18.62375808 -5.260500686 24.99992373 1.012709735 1.281345416 0.39531281 0.163592899 89.37679599 2380320.773 0.043511238 0.070071612 5.49E-06 5.260500686 0.268635681 QLLHEK(ac)IR ddPTM_HeLa_A485_30min_R1 1 QLLHEKIR 8 1 P61221 P61221 ABCE1 ATP-binding cassette sub-family E member 1 0 1 QLLHEK(1)IR 75.378 0.0322 20925000 21931 56328 69812 17911 71385 29478 22219 23387 25672 16219 FALSE TRUE FALSE 26809.47529 62915.06961 95638.36392 18889.43258 64277.65875 31021.4225 17471.72914 17651.30158 30824.13492 12175.90179 2.201847202 5.167179459 7.854725307 1.551378527 5.279088142 2.54777207 1.434943337 1.449691521 2.531568951 1 13.57174101 -6.440655281 3.990863938 1.665238134 4.479890167 0.39069629 1.662614103 0.251481079 7.433041977 0.622198282 0.530795292 3.63E-07 6.440655281 2.814652033 QLLLQQQQQQQVSGLKS(ph)PK ddPTM_HeLa_A485_30min_R1 1 QLLLQQQQQQQVSGLKSPK 19 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;A0A3B3IST6;A0A3B3IRY1;A0A087WVT2;A0A3B3IU15;A0A3B3IU08;G5E965 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 QLLLQQQQQQQVSGLKS(1)PK 196.98 1.02E-25 436000000 252700 199770 129560 415060 254830 254570 406690 361220 180070 564240 TRUE FALSE FALSE 308912.2432 223131.3637 177489.6354 437733.6768 229458.2304 267898.8916 319797.3591 272630.2286 216208.3973 423585.3521 0.729279806 0.526768366 0.419017406 1.033401355 0.541704828 0.632455514 0.75497738 0.643625251 0.510424632 1 18.69229318 -11.20593566 2.361329569 2.088164935 0.644909228 0.302211496 0.162492435 14991583.12 3494121.229 86916307.15 0.040801535 6.22E-12 11.20593566 -1.443255707 QLLLQQQQQQQVSGLKS(ph)PK ddPTM_HeLa_A486_30min_R1 2 QLLLQQQQQQQVSGLKSPK 19 1 Q9H334-8;C9J0F0;Q9H334-3;Q9H334-7;Q9H334-6;Q9H334;Q9H334-4;A0A3B3IRS5;A0A3B3IUB6;A0A3B3IST0;A0A3B3IST6;A0A3B3IRY1;A0A087WVT2;A0A3B3IU15;A0A3B3IU08;G5E965 Q9H334-8 FOXP1 Forkhead box protein P1 1 0 QLLLQQQQQQQVS(0.003)GLKS(0.997)PK;QLLLQQQQQQQVS(0.003)GLKS(0.997)PK ; 256.76 2.53E-58 1333130000 1345850 1066360 418890 843700 926520 1304260 1905030 1668830 785060 2661110 TRUE FALSE FALSE 1251512.865 981857.75 581095.4263 1964176.238 810307.2221 1143353.662 1428371.345 1288873.839 853109.6329 1994750.735 0.627403135 0.492220774 0.291312301 0.984672523 0.406219789 0.573181221 0.71606508 0.646132781 0.427677312 1 20.92777705 -11.24579164 2.337175987 2.589637188 0.576601743 0.329033353 0.182515084 11029956.1 1763242.385 92826031.22 0.044710997 5.68E-12 11.24579164 -2.013035444 QLLLQQQTSGLKS(ph)PK ddPTM_HeLa_A486_30min_R1 1 QLLLQQQTSGLKSPK 15 1 A0A0U1RQE0;O15409;A0A0U1RQM2;A0A0U1RQY3;A0A0U1RQR8;O15409-9;A8MUV4;O15409-4;O15409-6;Q8N6B5;O15409-7;O15409-8;O15409-5;C9JQP8 A0A0U1RQE0 FOXP2 Forkhead box protein P2 1 0 QLLLQQQTSGLKS(1)PK 127.17 1.16E-05 298540000 244900 237370 112940 156820 214810 246050 323670 311900 160590 455090 TRUE FALSE FALSE 227733.7747 218559.9367 156673.3926 365084.8852 187866.5268 215694.8527 242684.3426 240887.1787 174510.0705 341132.5019 0.66758158 0.640689279 0.459274305 1.07021431 0.550714241 0.632290537 0.711407858 0.70613963 0.511560961 1 18.37997269 -9.986732296 4.203443467 1.000017493 0.665304361 0.293317369 0.15769034 75300176.55 148073910.9 19751.05885 0.038023309 1.03E-10 9.986732296 -0.334713132 QLLLTADDR ddPTM_HeLa_A485_30min_R1 2 QLLLTADDR 9 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 204.07 1.23E-11 86921000 150542 153733 180372 153066 165287 145331 173701 135701 149693 209180 FALSE FALSE TRUE 184029.5485 171710.7371 247099.1087 161427.608 148830.4459 152940.3064 136588.3623 102420.117 179735.012 157035.2757 1.17189942 1.093453279 1.573526124 1.027970354 0.947751677 0.973923252 0.869794139 0.65221089 1.144551829 1 17.26072915 -5.503868412 18.1752406 0.91983236 1.267633751 0.474331207 0.163655162 18.9178888 18085.83043 0.046296262 0.066814966 3.13E-06 5.503868412 0.347801391 QLLLTADDR ddPTM_HeLa_A486_30min_R1 1 QLLLTADDR 9 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 125.97 0.003067 21941000 16836 19723 17751 6174.5 23511 20627 20573 20902 19470 20913 FALSE FALSE TRUE 15655.88334 18160.07765 24624.66259 14374.54804 20562.03115 18082.25046 15425.4178 16143.07089 21157.67528 15676.24868 0.998700879 1.158445367 1.570826228 0.916963512 1.311667834 1.15348071 0.983999305 1.029778949 1.349664432 1 13.93629274 -6.528801002 24.4815576 1.089827635 1.199059762 0.057599227 0.19043425 374.3187568 1547340.621 0.071600524 0.055640343 2.96E-07 6.528801002 0.109232127 QLLQANPILEAFGNAK ddPTM_HeLa_A485_30min_R1 3 QLLQANPILEAFGNAK 16 0 P35579;P35579-2;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;A0A2R8Y4C3;M0QY43;P35749-4;P35749-3;P35749;P35749-2;A0A494C024 P35579;P35749-4 MYH9;MYH14;MYH11 Myosin-9;Myosin-14;Myosin-11 0 0 ;; ;; 222.79 2.50E-24 23054600 49293 57081 45731 46583 69347 56015 73526 81347 50504 66185 FALSE FALSE TRUE 60258.05779 63756.12641 62648.79993 49127.71134 62442.56919 58947.85878 57816.56945 61396.5207 60639.68955 49686.29754 1.212770135 1.28317322 1.260886865 0.988757741 1.256736208 1.186400712 1.163632074 1.235683151 1.22045096 1 15.60056042 -11.34644313 2.017226873 0.000138884 1.200021874 0.370131322 0.078631482 1066149.197 126278.1626 4859421.21 0.019943 4.50E-12 11.34644313 1.19988299 QLLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 QLLSPK 6 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 QLLS(1)PK;QLLS(1)PK ; 101.65 0.011522 484780000 941730 935900 532920 586890 911430 1065070 1464450 1332890 782870 1731040 TRUE FALSE FALSE 875719.5901 861735.8755 739280.8961 1366309.58 797109.9507 933672.4922 1098029.121 1029420.044 850729.8019 1297576.317 0.674888697 0.664111902 0.569739819 1.052970497 0.614306797 0.71955112 0.846215445 0.793340654 0.655629878 1 20.30738796 -14 0.165245807 1.960429762 0.67275636 0.269282003 0.131975255 186.6378731 1.738856095 59.24566573 0.51460627 1.00E-14 14 -1.287673402 QLMEIK(ac)AASLR ddPTM_HeLa_A486_30min_R1 1 QLMEIKAASLR 11 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 1 QLMEIK(1)AASLR 71.614 0.023146 0 4735.9 5673.6 4483.8 8559.7 7177.2 7018.5 6407.5 6641.4 4898.7 10501 FALSE TRUE FALSE 4403.937866 5224.003273 6220.04744 19927.41418 6276.968651 6152.628829 4804.275728 5129.298201 5323.32326 7871.48125 0.559480195 0.663662036 0.790200376 2.531596475 0.797431697 0.781635455 0.610339474 0.651630619 0.676279736 1 12.94241943 -5.97310326 24.9999952 0.72225935 1.151106287 0.11438909 0.521912211 493.4656164 458664.4024 0.172181481 0.195231087 1.06E-06 5.97310326 0.428846937 QLMEQDASS(ph)SPSAQVIGLK ddPTM_HeLa_A485_30min_R1 3 QLMEQDASSSPSAQVIGLK 19 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 QLMEQDAS(0.049)S(0.451)S(0.451)PS(0.049)AQVIGLK;QLMEQDAS(0.015)S(0.7)S(0.283)PS(0.002)AQVIGLK;QLMEQDAS(0.003)S(0.664)S(0.333)PS(0.001)AQVIGLK ;; 259.18 1.43E-58 85506000 283208 291770 244362 329710 374410 299472 383540 393140 292058 425040 TRUE FALSE FALSE 346206.6425 325889.9634 334761.6726 347721.2224 337132.4258 315151.8908 301593.5458 296721.7986 350671.3617 319085.3503 1.084996984 1.02132537 1.049128931 1.089743613 1.056558772 0.987672704 0.945181424 0.929913574 1.098989225 1 18.28358285 -6.261471591 6.247613029 0.984800962 1.059390493 0.349658468 0.045811012 0.163826298 32.16685729 0.015737678 0.014763077 5.48E-07 6.261471591 0.074589531 QLMEQDASS(ph)SPSAQVIGLK ddPTM_HeLa_A486_30min_R1 2 QLMEQDASSSPSAQVIGLK 19 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 QLMEQDAS(0.108)S(0.443)S(0.443)PS(0.006)AQVIGLK;QLMEQDAS(0.007)S(0.491)S(0.491)PS(0.011)AQVIGLK ; 155.49 6.84E-09 156053000 271950 297360 205900 103314 275090 272650 335790 328120 248510 330110 TRUE FALSE FALSE 252887.7094 273796.1106 285629.9942 240520.2132 240585.6471 239013.2151 251771.7904 253414.2388 270051.0469 247448.3073 1.021981973 1.10647801 1.154301669 0.972001853 0.972266287 0.9659117 1.017472268 1.024109809 1.091343278 1 17.91676765 -5.271776258 24.9994101 1.004544818 1.095476298 0.440392959 0.04547624 656.0935304 1586739.1 0.013548285 0.020340609 5.35E-06 5.271776258 0.090931481 QLNVNAKPFVPNVHAAEFVPSFLR ddPTM_HeLa_A485_30min_R1 2 QLNVNAKPFVPNVHAAEFVPSFLR 24 1 P15170-2;P15170-3 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 0 ; ; 193.87 3.73E-35 125866000 129865 172415 139372 113354 187123 180900 237036 277390 139659 168141 FALSE FALSE TRUE 158753.0212 192577.4344 190931.5026 119546.242 168492.3771 190371.6443 186391.3222 209359.6676 167687.2803 126226.5431 1.257683347 1.525649279 1.512609772 0.947076891 1.334841096 1.508174427 1.476641264 1.65860256 1.328462906 1 16.94565579 -6.142450085 7.435210969 1.440248208 1.316502338 0.010747063 0.219582506 0.839476913 48.10775542 0.072763246 0.072849184 7.20E-07 6.142450085 -0.12374587 QLNVNAKPFVPNVHAAEFVPSFLR ddPTM_HeLa_A486_30min_R1 2 QLNVNAKPFVPNVHAAEFVPSFLR 24 1 P15170-2;P15170-3 P15170-2 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 0 ; ; 177.22 3.89E-27 124896000 82084 85604 69827 26114.5 112733 79467 98807 101240 74537 96445 FALSE FALSE TRUE 76330.33548 78820.42728 96865.88443 60795.87575 98592.97595 69663.1695 74084.44353 78189.86205 80997.92717 72294.54425 1.055824285 1.090267988 1.339878209 0.84094694 1.363767861 0.963602029 1.024758428 1.081545819 1.120387825 1 16.14159916 QLPALDGSLMGPES(ph)PPAQEEEAPVSPHKKPAPQKR ddPTM_HeLa_A485_30min_R1 1 QLPALDGSLMGPESPPAQEEEAPVSPHKKPAPQKR 35 3 A0A494C108;Q8N9T8 A0A494C108 KRI1 Protein KRI1 homolog 1 0 QLPALDGSLMGPES(0.825)PPAQEEEAPVS(0.175)PHKKPAPQKR 64.152 0.0050244 243720000 53348 70431 37704 39595 72174 99546 118870 149790 52123 72446 TRUE FALSE FALSE 65215.07855 78667.29278 51652.27859 41757.97459 64988.10314 104758.0746 93472.45342 113053.7676 62583.608 54386.54547 1.19910316 1.446447685 0.949725307 0.767799724 1.194929786 1.926176295 1.7186687 2.078708377 1.150718573 1 15.73096217 -6.119375927 6.232005988 1.648947814 1.091842038 0.300937724 0.346347254 0.260968317 12.33654877 0.113603217 0.11394394 7.60E-07 6.119375927 -0.557105777 QLPITYPS(ph)AEEDLASHEDSVPSAMTTR ddPTM_HeLa_A485_30min_R1 1 QLPITYPSAEEDLASHEDSVPSAMTTR 27 0 Q8NDX5-2;Q8NDX5;Q8NDX5-7;H7C528 Q8NDX5-2 PHC3 Polyhomeotic-like protein 3 1 0 QLPIT(0.008)YPS(0.992)AEEDLASHEDSVPSAMTTR 123.73 7.20E-06 80630000 10912 14608 12575 13518 17175 15657 20713 22677 16385 19011 TRUE FALSE FALSE 13339.33675 16316.27853 17227.01579 14256.45411 15464.99669 16476.77631 16287.49834 17115.43019 19673.31921 14271.90757 0.934656891 1.143244408 1.20705769 0.998917211 1.083597033 1.154490122 1.141227846 1.199239142 1.378464589 1 13.80089056 -6.71954371 1.596458941 1.209096765 1.082088887 0.164205952 0.110998745 0.656414481 3.417576627 0.060178715 0.037777993 1.91E-07 6.71954371 -0.127007878 QLPLEPES(ph)PSGQVGPR ddPTM_HeLa_A485_30min_R1 2 QLPLEPESPSGQVGPR 16 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.996)PS(0.004)GQVGPR;QLPLEPES(0.954)PS(0.046)GQVGPR ; 216.29 1.20E-33 405520000 370780 321120 354240 425040 436350 309490 376540 258530 354850 535280 TRUE FALSE FALSE 453258.7318 358672.1906 485288.1172 448258.8589 392905.4619 325694.4178 296089.153 195125.1121 426065.1401 401844.5471 1.127945458 0.892564533 1.207651368 1.115503152 0.977754867 0.810498538 0.736825111 0.485573622 1.060273539 1 18.61627798 -6.153724876 2.738342167 0.777670289 1.079207711 0.3577844 0.165021997 0.277399393 4.042425232 0.058205475 0.057820332 7.02E-07 6.153724876 0.301537422 QLPLEPES(ph)PSGQVGPR ddPTM_HeLa_A486_30min_R1 1 QLPLEPESPSGQVGPR 16 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.918)PS(0.082)GQVGPR 103.67 0.00020084 0 43396 45004 39652 13122 46837 36943 48124 39700 37371 42613 TRUE FALSE FALSE 40354.1645 41437.71914 55006.31632 30548.67915 40962.26672 32385.34827 36082.8662 30661.17664 40610.34837 31942.42744 1.26334057 1.297262684 1.722045591 0.956366864 1.282378016 1.013866223 1.12962192 0.959888747 1.271360746 1 14.96318633 -5.28203444 24.99824509 1.092758434 1.414520984 0.490335485 0.158579608 661.7435636 803221.5747 0.043049788 0.063932098 5.22E-06 5.28203444 0.32176255 QLPLEPES(ph)PSGQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_A485_30min_R1 2 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 QLPLEPES(0.88)PS(0.123)GQVGPRPAPPQEES(0.862)PS(0.118)S(0.017)EAK;QLPLEPES(0.992)PS(0.008)GQVGPRPAPPQEES(0.634)PS(0.326)S(0.04)EAK ; 193.6 2.89E-21 381929000 297030 281479 194033 328980 325765 305061 438960 483120 260732 472900 TRUE FALSE FALSE 363103.2988 314395.5205 265813.8811 346951.3444 293330.6928 321033.5222 345172.61 364634.0625 313058.5208 355014.7331 1.022783746 0.885584431 0.748740422 0.977287172 0.826249351 0.904282252 0.97227686 1.027095578 0.881818391 1 18.43751937 -6.709281655 4.657407092 0.972932728 0.886694058 0.183320209 0.078390371 0.331029561 14.99686848 0.031148343 0.023135316 1.95E-07 6.709281655 -0.08623867 QLPLEPES(ph)PSGQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_A486_30min_R1 2 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 QLPLEPES(0.981)PS(0.019)GQVGPRPAPPQEES(0.973)PS(0.022)S(0.004)EAK;QLPLEPES(0.983)PS(0.017)GQVGPRPAPPQEES(0.884)PS(0.099)S(0.017)EAK ; 138.84 7.08E-07 629400000 381340 363490 203070 181346 355650 384550 480650 455980 279126 556290 TRUE FALSE FALSE 354610.0352 334685.7286 281704.1424 422182.6527 311041.0607 337108.1308 360386.2862 352163.308 303320.8664 416991.3632 0.850401391 0.802620289 0.675563494 1.012449393 0.745917274 0.808429528 0.864253599 0.844533818 0.727403235 1 18.66965798 -10.72356748 2.969905725 1.027762748 0.816131866 0.290086769 0.086972156 119895715.1 98485340.54 24502786.96 0.021085123 1.89E-11 10.72356748 -0.211630881 QLPLEPES(ph)PSGQVGPRPAPPQEESPS(ph)SEAK ddPTM_HeLa_A485_30min_R1 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 QLPLEPES(0.863)PS(0.137)GQVGPRPAPPQEES(0.117)PS(0.737)S(0.146)EAK 144 2.68E-09 263590000 235700 216950 161060 289560 311060 242220 368850 403280 198010 383650 TRUE FALSE FALSE 288130.6518 242320.4153 220642.7963 305377.9296 280089.7742 254902.2647 290042.1843 304374.9477 237748.7907 288013.1156 1.000408094 0.841352016 0.766085933 1.060291748 0.972489651 0.885037003 1.007045057 1.05680933 0.825479042 1 18.13577499 -5.265626777 24.99999154 0.972618186 0.866489016 0.230174362 0.086415949 518.0177671 3092720.648 0.024011114 0.0370635 5.42E-06 5.265626777 -0.10612917 QLPLEPESPSGQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_A485_30min_R1 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPESPSGQVGPRPAPPQEES(1)PSSEAK 268.11 2.60E-64 553420000 178920 185990 120870 224240 237740 218740 329470 334640 189720 335530 TRUE FALSE FALSE 218720.1367 207739.9126 165584.8428 236489.6634 214069.7708 230192.8882 259076.043 252569.0153 227795.0638 251888.546 0.86832109 0.824729492 0.657373451 0.938866285 0.849859092 0.913868026 1.028534434 1.00270147 0.904348639 1 17.94242599 -6.066910173 1.227870242 0.982543287 0.799670442 0.518254198 0.071738533 0.367135002 1.150465172 0.033384218 0.035830055 8.57E-07 6.066910173 -0.182872845 QLPLEPESPSGQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_A486_30min_R1 2 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPESPSGQVGPRPAPPQEES(0.999)PS(0.001)SEAK;QLPLEPESPSGQVGPRPAPPQEES(0.915)PS(0.065)S(0.02)EAK ; 250.38 2.74E-51 1290830000 276858 228542 118681 113946 204892 238600 292745 292994 190693 364757 TRUE FALSE FALSE 257451.6839 210431.4996 164637.4616 265272.0465 179192.5348 209163.9579 219497.1047 226285.6622 207222.4228 273419.473 0.941599664 0.769628795 0.602142414 0.970201733 0.655375906 0.764992908 0.802785194 0.827613555 0.757891969 1 18.06075647 -10.32912255 3.475677461 1.001003955 0.784395203 0.263668735 0.106114232 82779908.7 129899691.3 866328.7397 0.025327789 4.69E-11 10.32912255 -0.216608752 QLPS(ph)DGKK ddPTM_HeLa_A485_30min_R1 2 QLPSDGKK 8 1 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 0 QLPS(1)DGKK;QLPS(1)DGKK ; 77.379 0.0065575 288580000 362790 228395 124707 613888 184148 320195 532259 447633 239948 1293440 TRUE FALSE FALSE 443491.3839 255103.8085 170841.3088 647423.147 165813.5785 336959.9151 418537.5165 337850.3049 288103.3627 971009.212 0.456732417 0.262720276 0.175942006 0.666752837 0.170764166 0.347020307 0.431033518 0.347937281 0.296705077 1 19.88912546 -10.71286804 2.515058291 1.123397708 0.349088052 0.664971472 0.138275532 10406712.97 7953494.103 8086467.103 0.034310109 1.94E-11 10.71286804 -0.774309656 QLPS(ph)DGKK ddPTM_HeLa_A486_30min_R1 2 QLPSDGKK 8 1 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 0 QLPS(1)DGKK;QLPS(1)DGKK ; 60.691 0.019242 248690000 572370 458230 273130 253980 494980 724180 692930 559470 545190 1378060 TRUE FALSE FALSE 532249.8187 421918.186 378893.2507 591278.2754 432894.9929 634838.0345 519551.5849 432090.8941 592447.5082 1032984.806 0.515254257 0.408445684 0.366794602 0.572397843 0.419071985 0.614566672 0.502961497 0.418293562 0.573529741 1 19.9783876 -14 0.286140199 4.932123628 0.453548477 0.80960703 0.075330786 97.93921272 0.930904033 229.2477342 0.083138896 1.00E-14 14 -4.478575151 QLPS(ph)PPFLPAAGTADCR ddPTM_HeLa_A486_30min_R1 1 QLPSPPFLPAAGTADCR 17 0 P49716 P49716 CEBPD CCAAT/enhancer-binding protein delta 1 0 QLPS(0.998)PPFLPAAGT(0.002)ADCR 68.173 0.0086793 33416000 31709 38531 31853 13277 46074 31336 31721 35684 28946 28838 TRUE FALSE FALSE 29486.36285 35477.66323 44187.33465 30909.52698 40294.9693 27470.08292 23784.07029 27559.53218 31455.06259 21616.7771 1.36404991 1.641209653 2.044122232 1.429886002 1.86405999 1.270776064 1.100259774 1.274914019 1.455122678 1 14.39986382 -6.344989101 6.766965288 1.226211824 1.674034588 0.52642394 0.212786778 0.211805763 14.5447315 0.074603185 0.065691689 4.52E-07 6.344989101 0.447822764 QLPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QLPSPR 6 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 QLPS(1)PR 101.25 0.0098772 0 154620 156450 147810 54396 210330 126650 159810 173130 134450 151950 TRUE FALSE FALSE 143781.9365 144052.3322 205045.9905 126636.637 183948.4502 111025.2107 119823.8477 133712.0784 146104.2343 113900.731 1.262344282 1.264718242 1.800216634 1.111815841 1.614989198 0.974754154 1.052002447 1.173935209 1.282733069 1 16.79741748 -6.270513136 24.96158348 1.104763268 1.407722409 0.385120584 0.19831198 724.7052586 1993633.657 0.067868056 0.060672964 5.36E-07 6.270513136 0.302959141 QLPTPVGAVQQDPALS(ph)SNR ddPTM_HeLa_A485_30min_R1 1 QLPTPVGAVQQDPALSSNR 19 0 H0YBN6;Q9Y6M4-6;Q9Y6M4-5;Q9Y6M4-3;Q9Y6M4-4;Q9Y6M4;Q9Y6M4-2 H0YBN6 CSNK1G3 Casein kinase I isoform gamma-3 1 0 QLPTPVGAVQQDPALS(0.5)S(0.5)NR 89.261 0.00021466 0 46765 54708 35179 44081 57617 46248 65103 70647 44752 81025 TRUE FALSE FALSE 57167.71291 61105.6247 48193.17602 46489.03341 51880.44917 48669.47377 51193.21221 53320.71248 53733.31591 60826.95865 0.939841711 1.004581292 0.792299617 0.764283378 0.852918678 0.800129989 0.841620448 0.876596721 0.883379954 1 15.89242325 -9.907474328 10.15037779 0.999996912 0.858805455 0.271878289 0.067726024 0 0 0.071829446 0.017421199 1.24E-10 9.907474328 -0.141191457 QLQDKLNES(ph)DEQHQENEGTNQLVMGIQK ddPTM_HeLa_A485_30min_R1 1 QLQDKLNESDEQHQENEGTNQLVMGIQK 28 1 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 0 QLQDKLNES(1)DEQHQENEGTNQLVMGIQK 312.1 7.98E-109 369720000 252810 207040 149940 374840 321120 309140 484610 535760 228480 492630 TRUE FALSE FALSE 309046.7123 231251.527 205409.0455 395316.5601 289148.1653 325326.0924 381069.1146 404364.02 274333.8403 369826.4072 0.835653448 0.625297498 0.555420169 1.068924642 0.781848347 0.879672425 1.030399958 1.093388715 0.741790837 1 18.49648872 -5.259357481 24.99996816 0.940557677 0.667441082 0.48531065 0.127461585 157.9166151 1896289.824 0.03516375 0.057226577 5.50E-06 5.259357481 -0.273116595 QLQDKLNES(ph)DEQHQENEGTNQLVMGIQK ddPTM_HeLa_A486_30min_R1 1 QLQDKLNESDEQHQENEGTNQLVMGIQK 28 1 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 0 QLQDKLNES(1)DEQHQENEGTNQLVMGIQK 217.1 2.00E-38 329150000 19549 13746 8143.3 9590.7 23550 23485 26162 32026 14609 35569 TRUE FALSE FALSE 18178.71605 12656.7169 11296.60385 22327.63429 20596.1394 20587.65948 19615.99089 24734.37892 15875.31988 26662.29088 0.681813732 0.474704779 0.423692169 0.8374237 0.772481986 0.772163936 0.735720384 0.927691436 0.5954222 1 14.70251312 -5.268806954 24.97935735 0.797115368 0.521533679 0.532693292 0.1195707 403.5013717 1368049.286 0.031685431 0.048085942 5.39E-06 5.268806954 -0.275581689 QLQPASELWS(ph)SDGAAGLVGSLQEVTIHEK ddPTM_HeLa_A486_30min_R1 1 QLQPASELWSSDGAAGLVGSLQEVTIHEK 29 0 Q9H1A4;F8WAS1 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 QLQPASELWS(0.5)S(0.5)DGAAGLVGSLQEVTIHEK 191.29 5.65E-21 151510000 137810 135520 88136 48530 131560 126900 158310 154440 111060 155910 TRUE FALSE FALSE 128150.2307 124780.9016 122264.6196 112980.2926 115058.5181 111244.3682 118699.1636 119277.3834 120686.7702 116869.1212 1.096527717 1.067697783 1.046167014 0.966724926 0.984507429 0.95187135 1.015658904 1.020606489 1.03266602 1 16.83453427 -4.961818096 2.761924409 0.995515364 1.083821314 0.675950065 0.024221409 0.167444569 2.574443031 0.007408999 0.017698395 1.09E-05 4.961818096 0.088305949 QLQPASELWSS(ph)DGAAGLVGSLQEVTIHEK ddPTM_HeLa_A485_30min_R1 2 QLQPASELWSSDGAAGLVGSLQEVTIHEK 29 0 Q9H1A4;F8WAS1 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 QLQPASELWS(0.047)S(0.953)DGAAGLVGSLQEVTIHEK;QLQPASELWS(0.159)S(0.841)DGAAGLVGSLQEVTIHEK ; 229.44 4.70E-39 629390000 209067 250442 216498 222522 292101 256252 337920 365800 231563 316850 TRUE FALSE FALSE 255573.2329 279729.0133 296589.6194 234677.8134 263018.3988 269668.9585 265720.6314 276086.9764 278035.5701 237865.1262 1.074445998 1.175998423 1.246881475 0.986600336 1.105745945 1.133705318 1.117106302 1.16068707 1.168879081 1 17.85978425 -10.98665388 2.71873311 0.879990527 1.130496315 0.262862433 0.065307372 25377647.95 4524007.918 19076330.31 0.017019914 1.03E-11 10.98665388 0.250505788 QLQPASELWSS(ph)DGAAGLVGSLQEVTIHEK ddPTM_HeLa_A486_30min_R1 1 QLQPASELWSSDGAAGLVGSLQEVTIHEK 29 0 Q9H1A4;F8WAS1 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 QLQPASELWS(0.039)S(0.961)DGAAGLVGSLQEVTIHEK 265.59 1.04E-63 176610000 168700 147530 99007 50384 149730 147160 166670 187070 129630 174570 TRUE FALSE FALSE 156875.0012 135839.1855 137345.1619 117296.4983 130949.4672 129004.8954 124967.4031 144478.2447 140866.4328 130856.5357 1.19883199 1.038077195 1.049585801 0.896374779 1.000710178 0.985849845 0.954995503 1.104096512 1.076495201 1 16.99762646 -1.405113165 8.550787694 1.0262428 1.140302573 0 0.079982843 0 0 0.01889563 0 0.039344754 1.405113165 0.114059773 QLS(ph)ALHR ddPTM_HeLa_A485_30min_R1 2 QLSALHR 7 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 1 0 QLS(1)ALHR;QLS(1)ALHR ; 82.831 0.0075537 221487000 171939 232107 201016 168468 254930 184398 220991 240455 194652 225400 TRUE FALSE FALSE 210186.2374 259249.8946 275380.1834 177670.9803 229548.2741 194052.7941 173774.4675 181483.0342 233716.8709 169211.9282 1.242147877 1.53210177 1.627427725 1.049990873 1.356572652 1.146803279 1.026963462 1.072519155 1.381208012 1 17.36847175 -5.266850734 24.99481242 1.154376282 1.473713391 0.481131884 0.151893468 374.5991979 1730257.796 0.042442503 0.06503734 5.41E-06 5.266850734 0.319337109 QLS(ph)ALHR ddPTM_HeLa_A486_30min_R1 4 QLSALHR 7 0 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738;P61313-2 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 1 0 QLS(1)ALHR;QLS(1)ALHR;QLS(1)ALHR;QLS(1)ALHR ;;; 86.898 0.0049521 304151000 383192 399536 316160 136270 431622 355534 402970 402340 331688 397121 TRUE FALSE FALSE 356332.2196 367875.3123 438585.6191 317243.4467 377483.944 311671.8299 302142.6438 310735.965 360438.9829 297679.3168 1.197033853 1.235810792 1.47334932 1.065722168 1.268089258 1.047005325 1.014993743 1.043861456 1.210829784 1 18.18339946 -5.935025763 1.421702511 1.064567884 1.277746723 0.397522281 0.11008754 0.415493128 1.739047187 0.044159522 0.052399477 1.16E-06 5.935025763 0.213178838 QLS(ph)ESESSLEMDDER ddPTM_HeLa_A486_30min_R1 1 QLSESESSLEMDDER 15 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 QLS(0.999)ES(0.001)ESSLEMDDER 226.23 1.21E-31 0 74016 91722 65865 24551 70985 76737 69294 78882 77871 95380 TRUE FALSE FALSE 68827.86062 84453.61467 91369.69193 57155.96874 62081.39939 67269.96914 51955.90828 60922.29058 84620.92098 71496.22718 0.962678219 1.181231766 1.277965223 0.799426361 0.868317138 0.940888377 0.726694405 0.852104971 1.183571838 1 16.12557949 -5.266620649 24.99858555 0.895875589 1.14468574 0.368727023 0.137281842 422.0770736 2036439.261 0.038713198 0.059449349 5.41E-06 5.266620649 0.248810151 QLS(ph)LEGSGLGVEDLKDNTPSGK ddPTM_HeLa_A485_30min_R1 2 QLSLEGSGLGVEDLKDNTPSGK 22 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 QLS(0.98)LEGS(0.02)GLGVEDLKDNTPSGK;QLS(0.772)LEGS(0.228)GLGVEDLKDNTPSGK ; 271.72 3.93E-73 1024440000 928480 765260 435180 1255510 949970 916800 1614720 1565580 759800 1765800 TRUE FALSE FALSE 1135017.173 854750.5001 596171.1914 1324095.332 855387.6513 964802.2304 1269721.881 1181619.05 912284.8907 1325618.557 0.856217022 0.644793704 0.449730572 0.998850933 0.645274349 0.727812858 0.957833514 0.891371838 0.688195624 1 20.33823427 -6.675364558 7.788362282 0.874894371 0.712973427 0.211278557 0.154446019 0.403327686 31.58405553 0.059092473 0.045592702 2.11E-07 6.675364558 -0.161920944 QLS(ph)LEGSGLGVEDLKDNTPSGK ddPTM_HeLa_A486_30min_R1 1 QLSLEGSGLGVEDLKDNTPSGK 22 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 QLS(1)LEGSGLGVEDLKDNTPSGK 269.81 1.48E-60 438830000 467130 429200 170100 225340 350640 508440 661580 651850 286660 780510 TRUE FALSE FALSE 434386.5993 395188.6289 235967.2754 524602.9081 306659.4616 445713.8422 496045.6865 503437.9848 311507.9196 585065.2157 0.742458426 0.675460817 0.403317902 0.896657149 0.524145776 0.761819076 0.847846827 0.860481825 0.532432815 1 19.15823792 -6.501010345 21.73121915 0.799459494 0.649375964 0.183118796 0.162574512 262.4785465 260833.2843 0.055492864 0.04836091 3.15E-07 6.501010345 -0.15008353 QLS(ph)LPLTQSK ddPTM_HeLa_A485_30min_R1 4 QLSLPLTQSK 10 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 1 0 QLS(0.999)LPLT(0.001)QSK;QLS(0.988)LPLT(0.012)QSK;QLS(0.969)LPLT(0.031)QSK;QLS(0.988)LPLT(0.012)QSK ;;; 198.37 1.07E-13 3273280000 4181890 4986600 3523410 4543600 5319700 5055800 6585600 7715000 4029170 5649000 TRUE FALSE FALSE 5112137.003 5569739.492 4826865.98 4791805.363 4790051.989 5320513.87 5178532.761 5822884.153 4837787.461 4240808.262 1.205462895 1.31336744 1.138194816 1.129927379 1.129513926 1.254599015 1.221119287 1.373059991 1.140770146 1 22.01590783 -6.287219939 24.84017277 1.22267653 1.185049367 0 0.102533097 3278.725348 3159114.376 0.035697051 0.031492301 5.16E-07 6.287219939 -0.037627162 QLS(ph)LPLTQSK ddPTM_HeLa_A486_30min_R1 4 QLSLPLTQSK 10 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 1 0 QLS(0.92)LPLT(0.08)QSK;QLS(0.999)LPLT(0.001)QSK;QLS(0.989)LPLT(0.011)QSK;QLS(0.998)LPLT(0.002)QSK ;;; 187.74 8.90E-10 3187260000 5436000 5466600 3475670 2288650 5733000 5552400 6437500 6346700 4367310 6342200 TRUE FALSE FALSE 5054964.472 5033406.707 4821542.506 5328092.862 5013913.682 4867401.341 4826769.411 4901694.957 4745871.947 4754071.839 1.063291562 1.058756972 1.014192185 1.120743027 1.054656693 1.023838407 1.015291644 1.031051933 0.998275186 1 22.18073227 -6.283467103 3.660471015 1.01473376 1.063159952 0.479753994 0.025549775 0.227095343 6.644983218 0.009305249 0.008524903 5.21E-07 6.283467103 0.048426191 QLS(ph)MSSADSADAKR ddPTM_HeLa_A485_30min_R1 1 QLSMSSADSADAKR 14 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 QLS(0.937)MS(0.05)S(0.012)ADSADAKR 72.433 0.0053672 259590000 183600 204780 132520 177560 223440 201850 249640 253540 165320 223520 TRUE FALSE FALSE 224441.1866 228727.2397 181544.6626 187259.6532 201193.5291 212418.5539 196302.3746 191358.9175 198498.2076 167800.5776 1.337547164 1.363089704 1.081907257 1.115965486 1.199003793 1.265898824 1.169855178 1.140394868 1.182941146 1 17.35638816 -1 0.022946764 1.06E-08 2.766922565 0.462980012 0.078093981 2490.960687 4.409297175 188.6156517 371.5409707 0.1 1 2.766922554 QLS(ph)MSSADSADAKR ddPTM_HeLa_A486_30min_R1 1 QLSMSSADSADAKR 14 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 QLS(0.979)MS(0.02)S(0.001)ADSADAKR 148.15 4.09E-08 288430000 235370 201160 124920 103140 227310 216240 285190 293120 159550 296220 TRUE FALSE FALSE 218871.7785 185219.349 173292.3695 240115.1324 198798.6602 189562.5074 213832.4456 226382.9748 173379.9225 222044.5839 0.985710953 0.83415387 0.780439524 1.081382523 0.895309657 0.853713718 0.963015813 1.019538377 0.780833828 1 17.76048986 -11.46695126 2.332664485 2.080242941 0.912054363 0.072125603 0.096198234 9649189.42 1784330.476 54670061.97 0.02363445 3.41E-12 11.46695126 -1.168188578 QLS(ph)MTLR ddPTM_HeLa_A485_30min_R1 3 QLSMTLR 7 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4;E5RJQ8;E5RGV7 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 QLS(0.923)MT(0.077)LR;QLS(0.874)MT(0.126)LR;QLS(0.853)MT(0.147)LR ;; 108.26 0.0031864 360143000 347764 455859 441168 334218 459314 365925 402513 493102 360140 391375 TRUE FALSE FALSE 425122.902 509167.7446 604374.4017 352475.4831 413583.0854 385084.2672 316512.8093 372167.9613 432416.7946 293812.4152 1.446919463 1.732968786 2.057007704 1.199661637 1.407643326 1.310646682 1.077261521 1.26668562 1.471744461 1 18.16453583 -5.281475121 24.98175482 1.26096526 1.74436568 0.590407295 0.189842202 546.5610418 681483.6194 0.053585934 0.079595612 5.23E-06 5.281475121 0.48340042 QLS(ph)MTLR ddPTM_HeLa_A486_30min_R1 4 QLSMTLR 7 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4;E5RJQ8;E5RGV7 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 QLS(0.968)MT(0.032)LR;QLS(0.851)MT(0.149)LR;QLS(0.984)MT(0.016)LR;QLS(0.947)MT(0.053)LR ;;; 118.04 0.0022582 475879000 609650 635990 516370 192207 685020 546500 622040 673030 556170 515930 TRUE FALSE FALSE 566916.6832 585591.8362 716322.2929 447467.6096 599098.404 479078.3864 466399.0127 519795.7611 604379.2634 386737.7699 1.465894276 1.514183206 1.852217054 1.157031054 1.549107563 1.238768033 1.205982578 1.344052228 1.562762447 1 18.56099614 -5.27336334 24.9993551 1.312959258 1.601106697 0.374574714 0.18634228 818.6089458 1716264.917 0.051094287 0.076464608 5.33E-06 5.27336334 0.288147439 QLS(ph)PEDSSSPVK ddPTM_HeLa_A485_30min_R1 1 QLSPEDSSSPVK 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 QLS(0.992)PEDS(0.007)S(0.001)SPVK 104.09 0.00065496 0 95889 114880 119230 109640 135330 158260 199070 230000 131490 197880 TRUE FALSE FALSE 117219.1772 128314.2167 163338.1386 115629.3556 121856.07 166546.2489 156537.0682 173592.1394 157878.8369 148552.1577 0.789077581 0.863765419 1.099533935 0.77837547 0.820291485 1.121129787 1.053751562 1.168560202 1.062783869 1 17.18061003 -6.265732626 24.99525792 1.090061758 0.877489247 0.557921449 0.093650845 292.0680253 1700412.53 0.033241127 0.030345242 5.42E-07 6.265732626 -0.212572511 QLS(ph)PESLGTLQFGELNLGK ddPTM_HeLa_A485_30min_R1 1 QLSPESLGTLQFGELNLGK 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 QLS(1)PESLGTLQFGELNLGK 139.11 8.27E-07 75913000 68818 68613 44909 98545 83326 71242 99021 108570 55805 132860 TRUE FALSE FALSE 84126.32668 76636.6935 61522.70792 103928.2638 75029.77086 74972.12096 77864.35442 81943.03727 67004.55163 99740.44711 0.843452472 0.768361239 0.616828074 1.041987146 0.752250196 0.751672197 0.780669795 0.821562763 0.671789164 1 16.60589105 -10.1869371 3.92452051 1.000127052 0.784677957 0.269965681 0.106940944 141746660.1 381663674.5 276182.3576 0.025917917 6.50E-11 10.1869371 -0.215449095 QLS(ph)PQSK ddPTM_HeLa_A485_30min_R1 6 QLSPQSK 7 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 QLS(0.982)PQS(0.018)K;QLS(0.997)PQS(0.003)K;QLS(0.775)PQS(0.225)K;QLS(0.998)PQS(0.002)K;QLS(0.993)PQS(0.007)K;QLS(0.992)PQS(0.008)K ;;;;; 132.32 0.0016461 11242260000 10850570 11734190 8429800 13402330 12498880 12003890 16434770 17258210 10373870 17175210 TRUE FALSE FALSE 13264241.86 13106401.45 11548333.81 14134465.35 11254447.62 12632395.12 12923347.13 13025606.94 12455810.55 12893746.23 1.028734522 1.016492896 0.895653878 1.096226426 0.872860953 0.979730397 1.002295756 1.010226718 0.966035032 1 23.62016816 -10.51986936 6.352312914 1.000013678 0.98465461 0.005042966 0.060959016 1.12E-05 8.43E-07 0.055772387 0.013514744 3.02E-11 10.51986936 -0.015359068 QLS(ph)PQSK ddPTM_HeLa_A486_30min_R1 5 QLSPQSK 7 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 QLS(0.993)PQS(0.007)K;QLS(0.999)PQS(0.001)K;QLS(0.999)PQS(0.001)K;QLS(1)PQSK;QLS(0.999)PQS(0.001)K ;;;; 149.33 0.00098062 10220580000 8556690 7246100 5052730 3205680 7350550 8979260 9819060 8657110 6853120 10326830 TRUE FALSE FALSE 7956910.218 6671892.646 7009282.373 7462985.046 6428575.478 7871490.196 7362227.333 6686075.036 7447153.959 7740924.552 1.027901792 0.861898679 0.905483877 0.964094792 0.830466107 1.016866931 0.951078554 0.86373081 0.962049676 1 22.88407446 -6.284436893 24.99057939 0.949749187 0.916722921 0.086069342 0.063054943 2621.894042 2849110.318 0.021814881 0.019253137 5.19E-07 6.284436893 -0.033026267 QLS(ph)SGVSEIR ddPTM_HeLa_A485_30min_R1 12 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 QLS(0.5)S(0.5)GVSEIR;QLS(0.497)S(0.497)GVS(0.006)EIR;QLS(0.5)S(0.5)GVS(0.001)EIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.487)S(0.487)GVS(0.027)EIR;QLS(0.832)S(0.167)GVSEIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.499)S(0.499)GVS(0.003)EIR;QLS(0.724)S(0.276)GVSEIR;QLS(0.57)S(0.429)GVS(0.001)EIR;QLS(0.778)S(0.221)GVS(0.001)EIR;QLS(0.9)S(0.1)GVSEIR ;;;;;;;;;;; 210.86 2.88E-14 1.95E+11 14916208 20543739 19095005 14965823 22072948 19339438 24704680 26461050 16753108 18972341 TRUE FALSE FALSE 18234267.01 22946150.57 26159041.96 15783368.02 19875287.79 20352021.07 19426323.3 19971436 20115303.11 14242885.55 1.280236856 1.611060518 1.836639203 1.108158032 1.395453732 1.42892541 1.363931714 1.402204345 1.412305325 1 23.76373812 -12.57316156 0.191779992 4.08E-10 1.519939965 0.340714977 0.180547387 88.10436567 1.41399023 35.32347458 0.520828746 2.67E-13 12.57316156 1.519939965 QLS(ph)SGVSEIR ddPTM_HeLa_A486_30min_R1 12 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 QLS(0.906)S(0.094)GVSEIR;QLS(0.754)S(0.243)GVS(0.003)EIR;QLS(0.776)S(0.224)GVSEIR;QLS(0.84)S(0.136)GVS(0.024)EIR;QLS(0.498)S(0.498)GVS(0.004)EIR;QLS(0.499)S(0.499)GVS(0.002)EIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.5)S(0.5)GVS(0.001)EIR;QLS(0.761)S(0.239)GVSEIR;QLS(0.908)S(0.092)GVSEIR;QLS(0.5)S(0.5)GVSEIR;QLS(0.905)S(0.094)GVSEIR ;;;;;;;;;;; 198.03 1.09E-13 1.65E+11 14015740 13954386 12457311 4561491 17707941 12849935 16608545 17443435 12975329 15202654 TRUE FALSE FALSE 13033309 12848589.63 17281115.44 10619381.57 15486845.92 11264640.67 12452911.37 13471945.64 14100040.96 11395810.49 1.143693028 1.127483618 1.516444614 0.931867162 1.358994688 0.988489646 1.092762238 1.182184071 1.237300408 1 23.4420002 -5.285478725 24.99911251 1.124884417 1.2490349 0.158701326 0.155111254 1624.489996 1689343.787 0.042332365 0.062825164 5.18E-06 5.285478725 0.124150483 QLS(ph)VSDR ddPTM_HeLa_A485_30min_R1 2 QLSVSDR 7 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 QLS(0.997)VS(0.003)DR;QLS(0.999)VS(0.001)DR ; 110.53 0.001736 334990000 849810 1207510 905980 603470 1055240 885340 996560 1195860 712050 816440 TRUE FALSE FALSE 1038847.303 1348717.791 1241139.703 636436.038 950176.6004 931695.0334 783636.8149 902573.46 854951.9037 612916.5335 1.694924588 2.200491775 2.024973443 1.038373095 1.550254478 1.520100997 1.278537569 1.472587882 1.394891241 1 19.2253311 -1 0.169826512 1.028593545 5.108982123 0.471549764 0.264920449 53.89461811 0.582142517 0.717815892 55.87756777 0.1 1 4.080388578 QLS(ph)VSDR ddPTM_HeLa_A486_30min_R1 1 QLSVSDR 7 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 QLS(1)VSDR 112.36 0.0027976 407030000 481540 526430 416440 183340 569500 454000 496730 517490 398750 489120 TRUE FALSE FALSE 447786.5327 484713.7696 577696.7207 426824.7855 498067.9996 397990.0959 372442.9001 399668.8237 433313.9711 366641.1684 1.22132093 1.32203858 1.575646083 1.164148553 1.35846174 1.085503021 1.015824005 1.090081688 1.181847562 1 18.48400926 -6.266515062 23.38572402 1.076604621 1.332593391 0.569531041 0.110231508 133.105223 613266.355 0.038495217 0.035040008 5.41E-07 6.266515062 0.25598877 QLSDVSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 QLSDVSSPR 9 0 Q9P0K7-4 Q9P0K7-4 RAI14 Ankycorbin 1 0 QLSDVS(0.069)S(0.931)PR 88.338 0.0038385 265720000 309480 464660 463270 267400 485330 431330 444440 508970 366830 378620 TRUE FALSE FALSE 378322.7583 518997.945 634652.8513 282007.3849 437008.8411 453913.7718 349481.7633 384144.3095 440449.4162 284237.002 1.331011641 1.825933785 2.23282981 0.992155782 1.537480476 1.596955247 1.229543518 1.351492968 1.549585076 1 18.11673485 -9.996679242 0.080375856 4.24E-09 2.252696717 0.230794663 0.313257833 119.4738938 1.89210675 40.03254943 15.84787407 1.01E-10 9.996679242 2.252696713 QLSDVSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QLSDVSSPR 9 0 Q9P0K7-4 Q9P0K7-4 RAI14 Ankycorbin 1 0 QLSDVS(0.287)S(0.713)PR 82.85 0.004476 0 400570 419720 362320 118250 442590 342290 368750 395280 338250 386270 TRUE FALSE FALSE 372492.1115 386459.8586 502620.0073 275291.976 387076.2352 300061.7399 276484.8498 305283.3729 367569.7823 289545.4778 1.286471867 1.33471212 1.735893135 0.950772839 1.336840893 1.036319898 0.954892654 1.054353793 1.269471674 1 18.14343044 -5.278020951 24.94180694 1.091265102 1.440594382 0.51449181 0.162873438 636.3090866 957127.28 0.045876661 0.068265392 5.27E-06 5.278020951 0.34932928 QLSES(ph)FK ddPTM_HeLa_A485_30min_R1 6 QLSESFK 7 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 QLS(0.002)ES(0.998)FK;QLS(0.002)ES(0.998)FK;QLS(0.001)ES(0.999)FK;QLS(0.018)ES(0.982)FK;QLS(0.303)ES(0.697)FK;QLS(0.201)ES(0.799)FK ;;;;; 92.538 0.0062453 2817347000 2990880 2811900 2022800 4386410 3572090 3131490 4735390 4745090 2569170 5933230 TRUE FALSE FALSE 3656190.938 3140727.245 2771117.896 4626028.471 3216440.177 3295449.974 3723635.242 3581349.237 3084778.853 4454184.954 0.820843987 0.705118283 0.62213804 1.038580238 0.722116439 0.739854768 0.835985771 0.804041429 0.692557423 1 22.08673003 -10.40750439 3.199807866 1.002835465 0.77681012 0.282070199 0.107342752 68108804.73 86462093.08 1757749.189 0.027052636 3.91E-11 10.40750439 -0.226025345 QLSES(ph)FK ddPTM_HeLa_A486_30min_R1 7 QLSESFK 7 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 QLS(0.006)ES(0.994)FK;QLS(0.007)ES(0.993)FK;QLSES(1)FK;QLS(0.022)ES(0.978)FK;QLS(0.005)ES(0.995)FK;QLS(0.005)ES(0.995)FK;QLS(0.137)ES(0.863)FK ;;;;;; 112.11 0.0028214 4152965000 6500910 6158020 3313560 3782930 6105050 7490330 9754810 8760160 4706220 12011770 TRUE FALSE FALSE 6045229.78 5670036.068 4596659.172 8806852.219 5339297.702 6566249.241 7314053.362 6765662.801 5114158.939 9003944.608 0.671397931 0.629728004 0.510516154 0.97811044 0.592995396 0.72926362 0.812316566 0.751410975 0.567990937 1 23.10212575 -11.69271706 2.128312866 9.999974154 0.698103861 0.339602774 0.127990474 2774091.785 144621.2179 121688251.4 0.031400525 2.03E-12 11.69271706 -9.301870294 QLSPEDSSS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 QLSPEDSSSPVK 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 QLSPEDS(0.002)S(0.057)S(0.942)PVK 184.76 4.89E-15 0 396790 438440 223700 180620 373400 488420 574340 432280 345720 619760 TRUE FALSE FALSE 368977.07 403696.4176 310322.6309 420492.488 326564.6902 428163.7063 430634.0573 333859.2806 375687.288 464568.062 0.794236841 0.868971526 0.667980983 0.905125691 0.702942619 0.921638273 0.926955795 0.718644496 0.808680834 1 18.82553045 -6.276815686 24.9362145 0.860834897 0.792213946 0.162576307 0.096136462 1906.813587 3092327.899 0.033387418 0.029547996 5.29E-07 6.276815686 -0.068620951 QLSQHEENELAEEPEALADGLCSMKLS(ph)PPCK ddPTM_HeLa_A485_30min_R1 2 QLSQHEENELAEEPEALADGLCSMKLSPPCK 31 1 Q7Z319;A0A499FJN1;A0A499FIS5;Q9BUB5-2;Q9BUB5 Q7Z319 DKFZp686E14208;MKNK1 MAP kinase-interacting serine/threonine-protein kinase 1 1 0 QLSQHEENELAEEPEALADGLCS(0.058)MKLS(0.942)PPCK;QLSQHEENELAEEPEALADGLCSMKLS(1)PPCK ; 311.69 2.61E-109 221260000 141276 137291 105082 123872 207332 149400 249164 245289 135385 237866 TRUE FALSE FALSE 172702.3588 153345.9882 143956.2046 130638.8137 186689.2981 157222.353 195928.0759 185131.4882 162555.5277 178570.3838 0.967138868 0.858742558 0.806159463 0.731581637 1.045466186 0.880450328 1.097203645 1.036742399 0.910316281 1 17.4461333 -5.775185433 24.99999779 0.996246655 0.839697812 0.469194742 0.080299187 210.7200332 383235.9619 0.025398379 0.028947412 1.68E-06 5.775185433 -0.156548843 QLSQHEENELAEEPEALADGLCSMKLS(ph)PPCK ddPTM_HeLa_A486_30min_R1 2 QLSQHEENELAEEPEALADGLCSMKLSPPCK 31 1 Q7Z319;A0A499FJN1;A0A499FIS5;Q9BUB5-2;Q9BUB5 Q7Z319 DKFZp686E14208;MKNK1 MAP kinase-interacting serine/threonine-protein kinase 1 1 0 QLSQHEENELAEEPEALADGLCS(0.343)MKLS(0.657)PPCK;QLSQHEENELAEEPEALADGLCS(0.102)MKLS(0.898)PPCK ; 188.2 2.73E-21 158587000 163515 150228 95465 12921.7 164605 159474 225760 199907 130745 140214 TRUE FALSE FALSE 152053.4429 138323.3862 132431.6046 30082.37063 143958.706 139799.7193 169272.4602 154392.54 142078.0819 105103.5018 1.446701968 1.316068293 1.260011345 0.286216635 1.369685154 1.330114763 1.610531118 1.468957147 1.351792086 1 16.68145121 -5.955386084 24.99987181 1.392420241 1.072436347 0.142769673 0.326452694 241.101258 135102.4847 0.104915733 0.118963212 1.11E-06 5.955386084 -0.319983895 QLSSGVSEIR ddPTM_HeLa_A485_30min_R1 1 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 102.42 0.013847 37901000 33195 30268 42879 52764 65774 38998 55411 47647 44011 73531 FALSE FALSE TRUE 40579.11323 33807.5793 58741.72644 55646.36371 59225.30961 41039.87498 43571.98718 35961.49854 52843.60401 55201.07494 0.735114548 0.61244422 1.064140988 1.008066669 1.072901382 0.743461518 0.789332223 0.651463737 0.957293025 1 15.75240874 -9.137799882 14.20525364 0.999989502 0.848366637 0.074873188 0.16002806 0 0 0.166354642 0.040346927 7.28E-10 9.137799882 -0.151622865 QLSSS(ph)SSYSGDISR ddPTM_HeLa_A486_30min_R1 1 QLSSSSSYSGDISR 14 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 0 QLSS(0.002)S(0.456)S(0.263)S(0.263)YS(0.015)GDIS(0.001)R 106.6 0.0003449 327090000 257010 313260 337330 71185 644340 359550 259360 310010 385390 301170 TRUE FALSE FALSE 238994.9262 288436.1367 467953.21 165722.2775 563520.869 315192.3766 194465.3848 239427.4905 418795.9155 225755.0717 1.058646986 1.27765075 2.072835868 0.734079975 2.496160395 1.396169638 0.861399849 1.060563064 1.855089732 1 17.78439887 -11.71684077 0.290837218 0.275687153 1.455236342 0.047942508 0.534265408 194.3419433 6.054895866 88.51772795 0.588959103 1.92E-12 11.71684077 1.179549189 QLSSSS(ph)SYSGDISR ddPTM_HeLa_A485_30min_R1 1 QLSSSSSYSGDISR 14 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 0 QLS(0.001)S(0.001)S(0.019)S(0.802)S(0.17)YS(0.008)GDISR 126.71 2.65E-05 371950000 345140 415730 275740 339610 268580 475340 465380 492470 381220 719630 TRUE FALSE FALSE 421915.2023 464346.0071 377747.7005 358162.0344 241839.2322 500228.0674 365947.7612 371690.9603 457727.3572 540239.4848 0.780978092 0.859518825 0.69922268 0.662969006 0.447651901 0.925937628 0.677380627 0.688011467 0.847267499 1 19.04323956 -8.013033793 3.412408969 0.999389284 0.717017033 0.350421013 0.121099047 0.2501241 7.535546844 0.118976102 0.031554877 9.70E-09 8.013033793 -0.282372251 QLSST(ph)SPLAPYPTSQMVSSDR ddPTM_HeLa_A486_30min_R1 1 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QLS(0.071)S(0.071)T(0.493)S(0.365)PLAPYPTSQMVSSDR 79.97 0.00055119 0 33598 35342 27062 11689 36290 30321 38544 37124 29483 33825 TRUE FALSE FALSE 31242.9537 32541.37121 37541.13115 27212.58273 31738.16981 26580.3033 28899.88352 28671.67561 32038.61018 25354.99984 1.232220623 1.283430149 1.480620445 1.073262982 1.251751923 1.048325911 1.139810046 1.130809536 1.263601277 1 14.62998264 -5.279193142 24.99920026 1.137224265 1.327224397 0.47543226 0.097177187 699.0178293 984290.3251 0.026529076 0.039448186 5.26E-06 5.279193142 0.190000132 QLSSTS(ph)PLAPYPTSQMVSSDR ddPTM_HeLa_A485_30min_R1 4 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QLS(0.001)S(0.004)T(0.029)S(0.967)PLAPYPTSQMVSSDR;QLS(0.003)S(0.012)T(0.059)S(0.926)PLAPYPTSQMVSSDR;QLSST(0.228)S(0.772)PLAPYPTSQMVSSDR;QLSSTS(1)PLAPYPTSQMVSSDR ;;; 266.28 2.75E-59 847632000 398270 606009 574986 412644 622556 542676 599096 646955 426663 492511 TRUE FALSE FALSE 486863.7875 676876.481 787697.2486 435185.6969 560572.1387 571089.6762 471094.2454 488288.2719 512290.3505 369737.0717 1.316783803 1.830696819 2.130425399 1.177013965 1.516137227 1.544583219 1.274133111 1.320636499 1.385553113 1 18.49614018 -7.130624075 0.307580449 0.983184162 1.772801035 0.3559901 0.249655954 1.751671519 0.537209051 0.428189575 0.495865167 7.40E-08 7.130624075 0.789616873 QLSSTS(ph)PLAPYPTSQMVSSDR ddPTM_HeLa_A486_30min_R1 2 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QLSSTS(1)PLAPYPTSQMVSSDR;QLSST(0.002)S(0.998)PLAPYPTSQMVSSDR ; 277.07 1.25E-72 654380000 354170 392870 349230 112258 454040 322690 340670 355700 308250 397780 TRUE FALSE FALSE 329344.5119 361737.5504 484461.2087 261342.2972 397090.0694 282879.7887 255430.7628 274714.8749 334969.3582 298173.2989 1.104540592 1.213178885 1.624763889 0.876477868 1.33174255 0.948709323 0.856652033 0.921326208 1.123404944 1 18.18579155 -6.273976095 23.95711806 0.95801595 1.231473997 0.326127865 0.186553844 521.0230746 995648.7228 0.064985756 0.057745058 5.32E-07 6.273976095 0.273458047 QLT(ph)QPETHFGR ddPTM_HeLa_A485_30min_R1 2 QLTQPETHFGR 11 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 QLT(1)QPETHFGR;QLT(1)QPETHFGR ; 138.21 1.68E-05 524850000 546950 627710 603700 634150 737600 691020 871000 928560 950330 1085990 TRUE FALSE FALSE 668617.1405 701115.2241 827033.7521 668792.0087 664161.9541 727200.7387 684903.7346 700829.2041 1141052.514 815272.6792 0.820114739 0.859976352 1.014425938 0.82032923 0.814650081 0.891972413 0.840091606 0.859625524 1.399596164 1 19.63692314 -7.738500627 24.99402136 1.199798018 0.866833355 0.619297926 0.104945985 118.2992588 128899.414 0.065899759 0.024871602 1.83E-08 7.738500627 -0.332964663 QLT(ph)QPETHFGR ddPTM_HeLa_A486_30min_R1 2 QLTQPETHFGR 11 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 QLT(1)QPETHFGR;QLT(1)QPETHFGR ; 184.01 2.01E-10 852320000 851690 1117580 542660 310520 759760 1461070 1560980 1944060 982550 1305080 TRUE FALSE FALSE 791990.9291 1029018.891 752792.4849 722906.2528 664463.8163 1280818.038 1170406.294 1501439.977 1067718.225 978279.4734 0.809575332 1.051865974 0.769506573 0.738956783 0.679216762 1.309255763 1.19639257 1.534776122 1.091424541 1 19.89988715 -6.268350556 24.99731061 1.257919749 0.817094086 0.622505285 0.1612043 348.9809711 1262239.366 0.055833695 0.050278153 5.39E-07 6.268350556 -0.440825663 QLT(ph)QPETHFGREPAAAISRPR ddPTM_HeLa_A486_30min_R1 1 QLTQPETHFGREPAAAISRPR 21 2 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 QLT(1)QPETHFGREPAAAISRPR 167.51 1.22E-13 162990000 89203 74453 28131 156940 61306 121880 237990 220400 48099 416190 TRUE FALSE FALSE 82950.33034 68553.07313 39024.07657 365364.2513 53616.42982 106843.6848 178442.3848 170219.7313 52268.26005 311973.3151 0.265889185 0.219740182 0.125087867 1.171139433 0.171862231 0.342476999 0.571979641 0.545622728 0.167540804 1 18.25106311 -11.0561542 2.742932749 1.843181506 0.408586067 0.269424715 0.296963288 49498981.1 19493142.64 261619814.1 0.073988494 8.79E-12 11.0561542 -1.434595439 QLTEMLPSILNQLGADS(ph)LTSLRR ddPTM_HeLa_A485_30min_R1 2 QLTEMLPSILNQLGADSLTSLRR 23 1 P20290;P20290-2;D6RDG3;H0Y9Y1 P20290 BTF3 Transcription factor BTF3 1 0 QLTEMLPSILNQLGADS(0.993)LT(0.007)SLRR;QLTEMLPSILNQLGADS(0.991)LT(0.007)S(0.001)LRR ; 195.58 5.07E-22 165593000 36654 46725 49096 30161 60757 46544 62008 77563 40812 48087 TRUE FALSE FALSE 44807.55585 52189.0823 67258.65346 31808.61906 54707.81975 48980.97187 48759.48424 58540.55264 49002.59405 36099.79588 1.241213551 1.445689125 1.863131129 0.881130164 1.51546064 1.356821297 1.350685871 1.621631126 1.357420253 1 15.13970306 -8.035307125 22.86927062 0.999999994 1.413101813 0.20515768 0.240240042 2888.570491 1870995.168 0.224130867 0.057870341 9.22E-09 8.035307125 0.413101819 QLTEMLPSILNQLGADS(ph)LTSLRR ddPTM_HeLa_A486_30min_R1 2 QLTEMLPSILNQLGADSLTSLRR 23 1 P20290;P20290-2;D6RDG3;H0Y9Y1 P20290 BTF3 Transcription factor BTF3 1 0 QLTEMLPSILNQLGADS(0.997)LT(0.003)SLRR;QLTEMLPSILNQLGADS(0.736)LT(0.23)S(0.034)LRR ; 205.89 3.73E-29 293570000 63959 60048 57728 27263 80000 52528 71378 73673 45398 56895 TRUE FALSE FALSE 59475.80438 55289.57779 80081.82761 63469.6418 69965.65403 46047.62943 53518.46944 56899.26617 49333.13519 42648.12168 1.394570313 1.296412963 1.877733988 1.48821658 1.640533071 1.079710609 1.254884561 1.33415644 1.156748135 1 15.38019458 -6.26012134 24.99993844 1.19159626 1.541931354 0.551468565 0.167969139 102.3812392 1941929.048 0.058143586 0.055146411 5.49E-07 6.26012134 0.350335094 QLTEMLPSILNQLGADSLTSLRR ddPTM_HeLa_A485_30min_R1 1 QLTEMLPSILNQLGADSLTSLRR 23 1 P20290;P20290-2;D6RDG3;H0Y9Y1 P20290 BTF3 Transcription factor BTF3 0 0 85.932 0.0002603 4202500 1307.3 2706.7 2304.5 1236 2408 2107.1 2700.2 3246 1520.8 1289.1 FALSE FALSE TRUE 1598.104375 3023.22502 3157.030448 1303.51955 2168.251065 2217.424498 2123.280211 2449.91341 1826.01061 967.7510941 1.651358892 3.123969622 3.262233923 1.346957454 2.240504897 2.291316963 2.194035454 2.531553232 1.886859774 1 9.918492223 -10.48062437 0.28827674 6.08E-18 2.466310491 0.334766064 0.555971165 26.01561251 1.462667782 19.94565142 0.678779539 3.31E-11 10.48062437 2.466310491 QLTEMLPSILNQLGADSLTSLRR ddPTM_HeLa_A486_30min_R1 1 QLTEMLPSILNQLGADSLTSLRR 23 1 P20290;P20290-2;D6RDG3;H0Y9Y1 P20290 BTF3 Transcription factor BTF3 0 0 51.175 0.02098 15520000 12958 11065 10277 4541.2 17452 9062 12414 12291 10620 13865 FALSE FALSE TRUE 12049.71112 10188.1691 14256.52963 10572.1431 15263.00743 7944.022576 9307.885898 9492.607611 11540.55015 10393.11375 1.159393749 0.980280727 1.371728431 1.017225766 1.468569265 0.764354433 0.895582028 0.9133555 1.110403525 1 13.34334033 -6.27852703 24.97897468 0.928751511 1.186712733 0.404629006 0.158807361 847.1542959 1238378.414 0.053996164 0.04773999 5.27E-07 6.27852703 0.257961222 QLTSNTVQQHPS(ph)TPKR ddPTM_HeLa_A486_30min_R1 1 QLTSNTVQQHPSTPKR 16 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 QLTSNTVQQHPS(0.5)T(0.5)PKR 63.488 0.015891 99285000 101680 94406 53436 49436 94476 98389 126030 125130 74278 119420 TRUE FALSE FALSE 94552.75708 86924.92474 74127.85027 115089.5064 82625.93913 86250.76553 94495.96099 96640.63057 80716.47685 89516.45471 1.056261191 0.97104968 0.828091891 1.285679898 0.923025151 0.96351856 1.055626715 1.079585098 0.901694299 1 16.44986528 QLVAGNS(ph)PK ddPTM_HeLa_A485_30min_R1 5 QLVAGNSPK 9 0 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 0 QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK ;;;; 142.1 0.00011882 3062570000 4917600 4706420 3289060 7761890 5797510 5047160 8285120 7913060 3846630 10347200 TRUE FALSE FALSE 6011503.154 5256794.879 4505820.163 8185902.397 5220289.548 5311421.493 6514936.429 5972369.628 4618613.358 7767833.466 0.773897018 0.676738875 0.580061375 1.053820532 0.672039324 0.683771288 0.838707016 0.768859123 0.594581923 1 22.88908084 -10.04463403 4.141725101 1.000027973 0.74121844 0.267596892 0.129912815 59364519.5 94514771.97 21993.58328 0.031934865 9.02E-11 10.04463403 -0.258809533 QLVAGNS(ph)PK ddPTM_HeLa_A486_30min_R1 6 QLVAGNSPK 9 0 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 0 QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK ;;;;; 149.41 7.59E-05 3146140000 7234320 6587240 3450670 4753940 5986020 7652900 10084600 8928290 5378440 13708500 TRUE FALSE FALSE 6727231.526 6065243.112 4786861.836 11067412.57 5235197.554 6708763.007 7561326.416 6895513.27 5844647.51 10275802.37 0.654667274 0.590245208 0.465838254 1.077036339 0.509468493 0.652869991 0.735838053 0.67104378 0.568777726 1 23.29274771 -10.48618134 2.753672059 1.012988564 0.661167512 0.292800584 0.159205271 20523536.69 21634498.56 2029485.572 0.041336735 3.26E-11 10.48618134 -0.351821052 QLVAGNS(ph)PKK ddPTM_HeLa_A485_30min_R1 2 QLVAGNSPKK 10 1 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 0 QLVAGNS(1)PKK;QLVAGNS(1)PKK ; 91.307 0.001791 1627810000 867440 763050 384570 1552880 993320 930950 1620250 1714640 688090 2037410 TRUE FALSE FALSE 1060399.035 852282.0598 526838.4463 1637709.902 894421.573 979693.1025 1274070.351 1294121.852 826183.3515 1529521.183 0.693288231 0.557221482 0.344446649 1.070733718 0.584772269 0.640522742 0.832986405 0.846096063 0.540158162 1 20.54464866 -13.99999999 0.08135299 1.982149952 0.389102969 0.209835364 0.189501224 390.2819557 2.238313997 69.40056841 6.218943017 1.00E-14 13.99999999 -1.593046983 QLVAGNS(ph)PKK ddPTM_HeLa_A486_30min_R1 2 QLVAGNSPKK 10 1 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 0 QLVAGNS(1)PKK;QLVAGNS(1)PKK ; 109.84 0.00044418 1323910000 2995500 2322780 1013440 2097250 2310050 3149500 4499900 4023700 1883490 5585100 TRUE FALSE FALSE 2785530.919 2138714.453 1405871.109 4882503.989 2020301.989 2760946.712 3373977.425 3107591.347 2046752.43 4186554.607 0.665351627 0.510853113 0.335806228 1.166234397 0.482569124 0.659479446 0.805907898 0.742278947 0.488887073 1 21.99733201 -14 0.200115326 2.494023235 0.602642208 0.176969739 0.21875714 255.0507451 2.523606145 153.5182744 0.523228151 1.00E-14 14 -1.891381027 QLVALLEELSAEHYLPIFAHHR ddPTM_HeLa_A485_30min_R1 1 QLVALLEELSAEHYLPIFAHHR 22 0 Q6UWE0-3;Q6UWE0-2;Q6UWE0 Q6UWE0-3 LRSAM1 E3 ubiquitin-protein ligase LRSAM1 0 0 74.207 0.0039662 3238800 2271 2255.8 2625 1605.5 2394.5 2452.3 1978.4 2443.6 1308.9 1313.2 FALSE FALSE TRUE 2776.176115 2519.596187 3596.096735 1693.2044 2156.095172 2580.698636 1555.698678 1844.303269 1571.584224 985.8434077 2.816041669 2.555777284 3.64773625 1.71751861 2.187056439 2.617757157 1.578038323 1.870787241 1.594151984 1 9.945214695 -6.546487268 0.274659834 0.881659063 3.339082214 0.612734333 0.452812606 1.702338539 0.326374009 0.788549148 1.477325663 2.84E-07 6.546487268 2.45742315 QLVHFAWEHFRPR ddPTM_HeLa_A485_30min_R1 2 QLVHFAWEHFRPR 13 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2;A0A087X028 A0A0A0MRN5 OGFR Opioid growth factor receptor 0 0 ; ; 142.38 2.91E-05 13516800 5891.8 5426.8 5870.5 3704.5 5930 3956.9 4338.2 5347.4 4364.5 6102 FALSE FALSE TRUE 7202.410584 6061.417053 8042.242242 3906.867455 5339.588379 4164.077165 3411.30813 4035.941766 5240.415116 4580.883699 1.572275364 1.323198197 1.755609348 0.852863271 1.165624087 0.909011763 0.744683418 0.881039998 1.143974713 1 12.16141022 -5.269463745 24.99938904 0.949664611 1.527644698 0.754290955 0.155060179 284.0075388 884806.7974 0.043613507 0.066006177 5.38E-06 5.269463745 0.577980086 QLVHFAWEHFRPR ddPTM_HeLa_A486_30min_R1 2 QLVHFAWEHFRPR 13 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2;A0A087X028 A0A0A0MRN5 OGFR Opioid growth factor receptor 0 0 ; ; 136.3 4.91E-05 10006300 6958 5287.5 6018.7 2655.9 7235.7 5354.6 6502.9 5431 3550.3 6366.4 FALSE FALSE TRUE 6470.280131 4868.499243 8349.301826 6183.069422 6328.131036 4694.003894 4875.805639 4194.479858 3858.042863 4772.212002 1.355824119 1.020176648 1.749566411 1.295640139 1.326037283 0.98361177 1.021707677 0.87893829 0.808439118 1 12.22044242 -6.314396827 2.129188317 0.913957933 1.361608306 0.582575169 0.174241535 0.239024916 2.128161909 0.070964302 0.062987433 4.85E-07 6.314396827 0.447650373 QLVYVEQAGS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 QLVYVEQAGSSPK 13 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 QLVYVEQAGS(0.5)S(0.5)PK 98.943 0.00089516 136970000 253280 250240 163960 158700 255500 279440 380510 347290 224670 457600 TRUE FALSE FALSE 235526.3799 230410.071 227449.703 369461.6203 223452.8076 244965.5339 285302.3734 268219.6483 244144.5765 343013.9815 0.686637842 0.671722097 0.663091638 1.077103676 0.651439357 0.714156119 0.831751441 0.781949608 0.711762755 1 18.38790786 -14 0.271219287 2.654028365 0.740953387 0.270527238 0.120475257 305.5201694 2.967969318 283.5455127 0.15070186 1.00E-14 14 -1.913074978 QLVYVEQAGSS(ph)PK ddPTM_HeLa_A486_30min_R1 1 QLVYVEQAGSSPK 13 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 QLVYVEQAGS(0.044)S(0.956)PK 182.09 4.14E-17 168420000 275520 339320 171920 193660 308330 339170 451940 405080 253950 568620 TRUE FALSE FALSE 256207.4708 312431.0474 238492.0282 450850.267 269656.3763 297326.6538 338859.8319 312852.1268 275962.5905 426233.8509 0.601096019 0.733003835 0.559533288 1.057753311 0.632648899 0.697566965 0.795009198 0.733991742 0.647444096 1 18.70128565 -10.70081041 2.505136082 1.049295681 0.723048506 0.291819872 0.131746567 20496810.91 15826716.43 6366710.582 0.033924827 1.99E-11 10.70081041 -0.326247175 QLWDS(ph)PETAPAAR ddPTM_HeLa_A485_30min_R1 2 QLWDSPETAPAAR 13 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 QLWDS(0.996)PET(0.004)APAAR;QLWDS(0.999)PET(0.001)APAAR ; 151.41 5.37E-08 306280000 301280 420320 390240 317100 433260 360080 418210 530390 341450 430450 TRUE FALSE FALSE 368298.6966 469472.7677 534606.0152 334422.3701 390123.1131 378933.232 328856.017 400311.0209 409975.883 323146.7368 1.139725872 1.452816056 1.65437541 1.034893229 1.207263044 1.17263518 1.017667764 1.238790231 1.268698818 1 18.3018299 -5.278598897 24.99670883 1.144008374 1.419356835 0.437884029 0.145775587 749.0241438 1091120.633 0.041296671 0.061418642 5.27E-06 5.278598897 0.275348461 QMDTVLSS(ph)SPDVLFDPINGLTPDEEALSNER ddPTM_HeLa_A485_30min_R1 1 QMDTVLSSSPDVLFDPINGLTPDEEALSNER 31 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 QMDT(0.002)VLS(0.089)S(0.455)S(0.455)PDVLFDPINGLTPDEEALSNER 73.975 0.00081564 24931000 6940.3 11435 9714.4 7020.9 10428 7162 9264.8 11007 6688 8732.7 TRUE FALSE FALSE 8484.145791 12772.22378 13308.16081 7404.433989 9389.751705 7536.991245 7285.299794 8307.515992 8030.220254 6555.798603 1.29414375 1.948233091 2.029983167 1.129448056 1.432281904 1.149667905 1.111275717 1.267201221 1.224903439 1 12.67855582 -5.272656212 24.99607413 1.204365042 1.776531314 0.605620522 0.210182903 461.0088909 1027331.156 0.058614047 0.08784945 5.34E-06 5.272656212 0.572166272 QMDTVLSSS(ph)PDVLFDPINGLTPDEEALSNER ddPTM_HeLa_A485_30min_R1 1 QMDTVLSSSPDVLFDPINGLTPDEEALSNER 31 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 QMDTVLS(0.036)S(0.167)S(0.797)PDVLFDPINGLTPDEEALSNER 108.1 5.93E-05 29481000 14131 18613 17977 11486 19921 14493 18911 20640 14795 17290 TRUE FALSE FALSE 17274.3922 20789.62844 24627.44039 12113.4511 17937.59529 15251.83107 14870.51036 15578.00764 17764.22079 12979.9212 1.330854936 1.601676013 1.897348991 0.93324535 1.381949476 1.17503264 1.145654903 1.200161958 1.368592345 1 13.663994 -5.264190899 24.9998702 1.188196211 1.609131579 0.546064961 0.182534916 184.9760729 1680667.315 0.049827814 0.077788193 5.44E-06 5.264190899 0.420935368 QMEQISQFLQAAER ddPTM_HeLa_A485_30min_R1 1 QMEQISQFLQAAER 14 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 107.97 0.0041869 134620000 32330 45313 45247 36673 59252 47913 52830 58366 40746 53956 FALSE FALSE TRUE 39521.69696 50611.96118 61985.74818 38676.35313 53352.66283 50421.65059 41542.43892 44051.64699 48923.34846 40505.76219 0.97570555 1.24950028 1.530294576 0.954835832 1.317162299 1.244801921 1.025593315 1.087540256 1.20781207 1 15.30583953 -6.751155646 24.9738699 1.087531428 1.221304304 0.134658077 0.162265408 426.9675333 1036884.965 0.062157016 0.047590275 1.77E-07 6.751155646 0.133772876 QMEQISQFLQAAER ddPTM_HeLa_A486_30min_R1 1 QMEQISQFLQAAER 14 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 129.82 0.00027465 138790000 78918 83269 68977 27366 92077 74727 80809 93384 67021 83372 FALSE FALSE TRUE 73386.25573 76670.46118 95686.74167 63709.431 80527.84408 65507.94251 60589.73349 72122.50176 72830.43424 62495.10854 1.174271994 1.226823394 1.531107696 1.01943068 1.288546351 1.048209117 0.969511613 1.154050348 1.165378154 1 15.93145565 -5.811765425 1.454154782 1.078247166 1.282888955 0.292268857 0.133830266 0.524380532 2.311101128 0.051418465 0.067845048 1.54E-06 5.811765425 0.204641788 QMFDFQGLIPGYTPTTVDS(ph)PLQKR ddPTM_HeLa_A485_30min_R1 1 QMFDFQGLIPGYTPTTVDSPLQKR 24 1 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 0 QMFDFQGLIPGYTPT(0.224)T(0.162)VDS(0.614)PLQKR 150.95 1.23E-09 70660000 24543 31450 18753 24437 30576 34425 41037 55408 21840 31039 TRUE FALSE FALSE 30002.50568 35127.80392 25690.51508 25771.93143 27531.74608 36227.43977 32269.10971 41819.10112 26223.08767 23301.54853 1.287575615 1.507530878 1.102523939 1.106017971 1.181541478 1.554722413 1.384848293 1.794691931 1.125379613 1 14.50813821 -6.245903239 24.59340596 1.422404194 1.237313463 0.05735653 0.231997116 1391.278313 2202367.068 0.074946922 0.074681862 5.68E-07 6.245903239 -0.18509073 QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR ddPTM_HeLa_A485_30min_R1 1 QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR 31 2 Q8N3C0 Q8N3C0 ASCC3 Activating signal cointegrator 1 complex subunit 3 0 0 97.639 4.86E-06 17863000 12795 11381 12808 10184 12693 11734 16717 19389 5518.3 15499 FALSE FALSE TRUE 15641.20361 12711.90895 17546.21219 10740.32613 11429.24035 12348.3741 13145.27638 14633.81735 6625.772193 11635.38454 1.344279044 1.092521601 1.508004495 0.923074446 0.982282993 1.061277696 1.129767249 1.257699503 0.569450212 1 13.50623127 -4.450166042 0.349031247 0.945556871 1.56463231 0.263124094 0.208218322 8.968916115 0.967889025 0.204114894 2.332073739 3.55E-05 4.450166042 0.619075439 QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR ddPTM_HeLa_A486_30min_R1 1 QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR 31 2 Q8N3C0 Q8N3C0 ASCC3 Activating signal cointegrator 1 complex subunit 3 0 0 125.12 3.21E-13 15762000 5919.3 12525 10900 4611.2 17330 14348 15952 15188 11287 13940 FALSE FALSE TRUE 5504.387637 11532.47338 15120.77191 10735.10664 15156.3098 12577.88964 11960.64088 11730.02395 12265.36625 10449.33327 0.526769268 1.103656386 1.447056145 1.027348479 1.450457117 1.203702602 1.144631966 1.122561952 1.173794149 1 13.35112327 -4.281525528 4.011615024 1.205791193 0.478487768 0.658703883 0.143321585 0.11896007 4.004020124 0.03428923 0.242660432 5.23E-05 4.281525528 -0.727303425 QMGYTEAIEVIQAAS(ph)SPVK ddPTM_HeLa_A486_30min_R1 1 QMGYTEAIEVIQAASSPVK 19 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 QMGYTEAIEVIQAAS(0.5)S(0.5)PVK 67.93 0.0027748 0 38338 31364 21328 18184 33638 34788 44057 41792 29345 45033 TRUE FALSE FALSE 35650.70418 28878.60241 29586.77278 42333.27097 29418.80838 30496.21026 33033.47261 32276.87391 31888.64823 33756.44368 1.056115523 0.855498958 0.876477779 1.254079706 0.871502006 0.903418931 0.978582724 0.956169264 0.944668477 1 15.0428753 QMGYTEAIEVIQAASS(ph)PVK ddPTM_HeLa_A485_30min_R1 1 QMGYTEAIEVIQAASSPVK 19 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 QMGYTEAIEVIQAAS(0.038)S(0.962)PVK 154.6 7.35E-13 0 33847 35819 31217 42671 41456 34727 48157 45253 29681 63221 TRUE FALSE FALSE 41376.14838 40007.72047 42765.46735 45002.00868 37328.49508 36545.25202 37867.86354 34154.6308 35637.70445 47461.1682 0.871789506 0.842956926 0.901062257 0.948185862 0.786506032 0.770003213 0.797870448 0.719633167 0.750881316 1 15.53445999 -5.785096997 24.42898081 0.788109413 0.888285907 0.223357112 0.075813142 222.1462256 229387.97 0.022494702 0.025522383 1.64E-06 5.785096997 0.100176493 QMGYTEAIEVIQAASS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 QMGYTEAIEVIQAASSPVK 19 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 QMGYTEAIEVIQAAS(0.196)S(0.804)PVK 106.57 6.98E-05 33453000 57347 62357 32331 29813 57241 64294 65186 62327 45745 79314 TRUE FALSE FALSE 53327.27144 57415.60422 44850.42905 69406.17067 50061.30003 56362.05997 48875.77333 48136.50269 49710.21343 59453.25815 0.896961295 0.965726791 0.754381348 1.167407352 0.842027865 0.948006244 0.822087382 0.809652897 0.836122611 1 15.85946825 -6.756667209 24.92678231 0.851103461 0.92968528 0.063073764 0.110719139 270.8123564 1414559.066 0.041352954 0.030982626 1.75E-07 6.756667209 0.07858182 QMNMS(ph)PPPGNAGPVIMSIEEK ddPTM_HeLa_A485_30min_R1 1 QMNMSPPPGNAGPVIMSIEEK 21 0 Q86U42-2;Q86U42;B4DEH8;G3V4T2;Q92843-2 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 0 QMNMS(1)PPPGNAGPVIMSIEEK 181.33 3.11E-19 57789000 54912 58354 47250 60712 66598 71640 98231 97334 44868 81534 TRUE FALSE FALSE 67126.98496 65177.99269 64729.74124 64028.54283 59967.26928 75390.95962 77243.14438 73462.68389 53872.59605 61209.07432 1.096683551 1.064841993 1.057518709 1.046062917 0.979712076 1.231695798 1.261955768 1.200192695 0.880140676 1 15.90145793 -6.251188921 24.97909367 1.136506457 1.05016008 0.065619878 0.10982976 1560.273178 3802191.835 0.037242971 0.036840608 5.61E-07 6.251188921 -0.086346377 QMNMS(ph)PPPGNAGPVIMSIEEK ddPTM_HeLa_A486_30min_R1 1 QMNMSPPPGNAGPVIMSIEEK 21 0 Q86U42-2;Q86U42;B4DEH8;G3V4T2;Q92843-2 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 0 QMNMS(1)PPPGNAGPVIMSIEEK 165.17 2.37E-17 0 104080 107560 48407 38660 99844 105480 108860 118450 77281 128430 TRUE FALSE FALSE 96784.52947 99036.55387 67151.48678 90002.43377 87320.63451 92466.95004 81622.0766 91481.52075 83979.7793 96270.29206 1.0053416 1.028734325 0.697530727 0.934893121 0.907036144 0.960493087 0.847842827 0.950257019 0.872333277 1 16.55480305 -10.51456229 5.816021356 1.000135177 0.910005107 0.082051658 0.088550456 0.000154524 1.29E-05 0.085359549 0.020671749 3.06E-11 10.51456229 -0.09013007 QMPSESLDPAFS(ph)PR ddPTM_HeLa_A485_30min_R1 2 QMPSESLDPAFSPR 14 0 Q15018 Q15018 FAM175B BRISC complex subunit Abro1 1 0 QMPSESLDPAFS(1)PR;QMPSESLDPAFS(1)PR ; 179.74 6.24E-11 203670000 292157 417660 402310 266418 464650 315070 387310 448010 322720 340660 TRUE FALSE FALSE 357146.3167 466501.7038 551141.2105 280971.7407 418387.8145 331566.578 304558.0545 338134.845 387486.9438 255739.7314 1.396522608 1.824126823 2.155086374 1.098662845 1.63599067 1.296500064 1.190890648 1.322183468 1.5151613 1 17.96431679 -5.272010874 24.99998896 1.317655494 1.795133438 0.464585559 0.243935134 623.1082202 1473555.773 0.067747846 0.101659178 5.35E-06 5.272010874 0.477477944 QMPSESLDPAFS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QMPSESLDPAFSPR 14 0 Q15018 Q15018 FAM175B BRISC complex subunit Abro1 1 0 QMPSESLDPAFS(1)PR 139.58 3.41E-06 297870000 202400 236520 207360 58478 265650 196630 192210 228190 180250 202070 TRUE FALSE FALSE 188212.8052 217777.2938 287655.3453 136139.7393 232329.6999 172371.7898 144117.025 176236.1184 195874.2151 151470.3567 1.242571875 1.437755205 1.899086735 0.898788002 1.533829489 1.137990254 0.951453658 1.163502365 1.293152134 1 17.20867596 -5.816597927 1.178223745 1.117930895 1.470725449 0.234084415 0.252696061 0.697317925 2.050485036 0.107161068 0.14835556 1.53E-06 5.816597927 0.352794553 QMS(ph)FDLTK ddPTM_HeLa_A485_30min_R1 3 QMSFDLTK 8 0 H0Y8E4;E9PH70;A0A1W2PPB7;Q9ULH0-3;Q9ULH0-2;Q9ULH0-4;Q9ULH0 H0Y8E4 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 0 QMS(1)FDLTK;QMS(1)FDLTK;QMS(1)FDLTK ;; 99.752 0.0020925 93164000 472690 410430 216544 586300 312545 431460 558420 539680 313563 1001600 TRUE FALSE FALSE 577838.2597 458426.2182 296652.6367 618328.0844 281426.9224 454050.5784 439109.0051 407322.6338 376492.2179 751919.5531 0.768484151 0.609674554 0.394527095 0.822332764 0.374277968 0.603855262 0.583984022 0.541710389 0.50070811 1 19.52021879 -10.49693773 3.064649951 1.012214086 0.574383088 0.470840716 0.134255833 53486542.85 63470426.01 5513062.587 0.031943972 3.18E-11 10.49693773 -0.437830999 QMSLLLR ddPTM_HeLa_A486_30min_R1 1 QMSLLLR 7 0 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 144.35 0.0035034 27446000 39012 42335 38510 12674 48638 37752 44385 46337 51307 45285 FALSE FALSE TRUE 36277.46026 38980.22042 53422.10333 29505.71251 42537.36851 33094.54207 33279.40354 35787.07663 55754.33207 33945.34124 1.068702182 1.148323127 1.57376834 0.869212429 1.253113592 0.974936202 0.980382059 1.05425591 1.642473754 1 15.05092597 -4.281452152 6.578467862 1.162524551 1.067581106 0.013964452 0.245021165 0.820869418 173.9223224 0.059809427 0.285797681 5.23E-05 4.281452152 -0.094943445 QMVIDVLHPGK ddPTM_HeLa_A485_30min_R1 1 QMVIDVLHPGK 11 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4 E7ETK0 RPS24 40S ribosomal protein S24 0 0 89.283 0.0089451 12248000 22229 22511 19493 23538 29721 23366 28186 30125 24592 35126 FALSE FALSE TRUE 27173.76436 25143.46563 26704.27187 24823.82134 26761.87288 24589.40763 22163.83084 22736.79652 29527.38883 26369.73465 1.030490626 0.953497104 1.012686408 0.94137547 1.014870769 0.932485971 0.840502612 0.862230766 1.119745391 1 14.68659543 -6.281326386 22.97590533 0.935476709 0.987017783 0.042974079 0.076839838 752.4184443 869280.9288 0.027044793 0.023897374 5.23E-07 6.281326386 0.051541074 QMVIDVLHPGK ddPTM_HeLa_A486_30min_R1 1 QMVIDVLHPGK 11 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4 E7ETK0 RPS24 40S ribosomal protein S24 0 0 77.305 0.019918 14722000 21595 24492 20593 9268.4 28581 27521 31802 31077 22039 28970 FALSE FALSE TRUE 20081.30202 22551.16472 28567.1611 21577.3036 24996.10447 24125.73883 23844.80323 24001.44551 23949.35826 21715.72344 0.924735576 1.038471722 1.315505845 0.993625824 1.151060177 1.110980203 1.098043236 1.105256547 1.102857951 1 14.4064524 -4.520954541 24.9977195 1.114831094 0.953169544 0.309174633 0.084142724 66.72314872 866793.3524 0.020096629 0.055046083 3.01E-05 4.520954541 -0.161661549 QNAPPKGTDTQTPAVLS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 QNAPPKGTDTQTPAVLSPSK 20 1 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNAPPKGTDTQTPAVLS(0.992)PS(0.008)K 136.71 9.64E-08 299580000 221230 173690 74173 109730 177610 180390 286570 250850 125470 412180 TRUE FALSE FALSE 205722.9194 159926.1718 102894.772 255456.9854 155332.4977 158135.3159 214867.155 193736.931 136345.8406 308967.4452 0.665840116 0.51761496 0.333027876 0.826808745 0.502747134 0.511818699 0.695436229 0.627046422 0.441295168 1 18.23709531 -10.88811944 2.486379995 1.226611619 0.569982531 0.484947755 0.133228093 23541992 12931338.69 31298515.12 0.032373388 1.29E-11 10.88811944 -0.656629088 QNAPPKGTDTQTPAVLS(ph)PSKTQATLKPK ddPTM_HeLa_A485_30min_R1 1 QNAPPKGTDTQTPAVLSPSKTQATLKPK 28 3 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNAPPKGTDT(0.003)QT(0.01)PAVLS(0.431)PS(0.431)KT(0.115)QAT(0.01)LKPK 50.055 0.035918 627540000 160480 163420 55288 139090 215560 318590 567980 838690 95840 231040 TRUE FALSE FALSE 196178.2224 182530.5474 75741.33193 146688.1345 194098.0895 335270.8798 446626.433 632999.9625 115074.2089 173445.98 1.131062377 1.052376927 0.436685428 0.845728074 1.119069404 1.93299885 2.575017496 3.649551074 0.663458495 1 17.40412688 -6.252235597 2.904544536 2.198332868 0.861116634 0.288422967 0.796631796 0.290332441 4.944174589 0.287884908 0.269138584 5.59E-07 6.252235597 -1.337216234 QNAPPKGTDTQTPAVLS(ph)PSKTQATLKPK ddPTM_HeLa_A486_30min_R1 1 QNAPPKGTDTQTPAVLSPSKTQATLKPK 28 3 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNAPPKGTDTQTPAVLS(0.965)PS(0.022)KT(0.005)QAT(0.008)LKPK 119.89 7.52E-05 484480000 378870 192230 61814 236350 261060 252090 501590 495340 129490 679390 TRUE FALSE FALSE 352313.1695 176996.9947 85750.03624 550234.7445 228315.4205 220989.6989 376086.8767 382561.8952 140714.2975 509266.3219 0.691805357 0.347552915 0.168379554 1.080445969 0.448322245 0.433937391 0.738487625 0.751202031 0.276307879 1 18.95806079 -11.50854677 2.278529595 7.454151894 0.55228385 0.216646127 0.257475379 7618170.271 687177.2711 254488320.4 0.065556469 3.10E-12 11.50854677 -6.901868044 QNDTPKGPQPPT(ph)VSPIR ddPTM_HeLa_A485_30min_R1 1 QNDTPKGPQPPTVSPIR 17 1 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNDTPKGPQPPT(0.6)VS(0.4)PIR 109.85 0.00019488 502840000 132710 265640 143590 89602 261440 292190 435230 743770 159780 154380 TRUE FALSE FALSE 162230.8817 296704.2872 196709.9163 94496.73038 235410.1156 307488.6166 342239.555 561359.2413 191846.3804 115895.9072 1.399798195 2.560092884 1.697298214 0.81535865 2.031220268 2.653144741 2.952990864 4.843650264 1.655333524 1 16.82247009 -6.245075414 3.078545699 2.909901758 1.671244253 0.147450167 1.030296139 0.390779309 7.570922252 0.368111576 0.346447302 5.69E-07 6.245075414 -1.238657505 QNDTPKGPQPPTVS(ph)PIR ddPTM_HeLa_A485_30min_R1 2 QNDTPKGPQPPTVSPIR 17 1 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNDTPKGPQPPT(0.014)VS(0.986)PIR;QNDTPKGPQPPT(0.009)VS(0.991)PIR ; 145.65 3.49E-08 780730000 413740 869100 435150 280979 802820 986780 1238570 2263390 475260 499040 TRUE FALSE FALSE 505775.0356 970733.6848 596130.0931 296328.1713 722888.4219 1038446.275 973939.4013 1708290.054 570640.3227 374638.5122 1.350034818 2.591120916 1.591214127 0.790970927 1.929562494 2.771862052 2.599677742 4.559835677 1.523175819 1 18.51513969 -6.165984049 4.245264756 2.720599444 1.62607491 0.141360509 0.975874047 0.363798619 11.52621083 0.323755238 0.322703354 6.82E-07 6.165984049 -1.094524533 QNDTPKGPQPPTVS(ph)PIR ddPTM_HeLa_A486_30min_R1 2 QNDTPKGPQPPTVSPIR 17 1 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNDTPKGPQPPT(0.03)VS(0.97)PIR;QNDTPKGPQPPT(0.004)VS(0.996)PIR ; 117.35 4.01E-05 456280000 737710 408450 318450 258700 804140 366690 693320 722430 301850 857310 TRUE FALSE FALSE 686000.3385 376082.9345 441762.3684 602266.674 703277.2629 321451.516 519844.0028 557948.4595 328014.601 642633.9958 1.06748218 0.585221039 0.687424524 0.937184584 1.094366727 0.500209323 0.808927019 0.868221201 0.510422111 1 19.29363778 -6.264228084 24.98618184 0.733780467 0.851381509 0.097076413 0.202451326 749.0622922 6711410.034 0.070172529 0.064640954 5.44E-07 6.264228084 0.117601042 QNGS(ph)NDSDRYS(ph)DNEEDSKIELK ddPTM_HeLa_A485_30min_R1 1 QNGSNDSDRYSDNEEDSKIELK 22 2 G5E972;P42167;H0YJH7;P42167-2;P42167-3 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 2 0 QNGS(0.543)NDS(0.457)DRYS(1)DNEEDSKIELK 115.54 5.37E-05 586040000 234180 129670 48332 329630 115020 166560 270830 408300 91780 847830 TRUE FALSE FALSE 286272.5331 144833.7785 66212.01806 347636.8522 103568.2049 175280.824 212964.958 308163.7848 110199.4041 636481.5842 0.449773474 0.227553761 0.104028176 0.546185249 0.162719877 0.275390252 0.334597203 0.484167637 0.173138402 1 19.27975925 -11.16710235 2.424102573 2.763651914 0.306097182 0.687306736 0.140351511 42137756.11 8845002.083 408803718.7 0.036441105 6.81E-12 11.16710235 -2.457554732 QNGS(ph)NDSDRYS(ph)DNEEDSKIELK ddPTM_HeLa_A486_30min_R1 1 QNGSNDSDRYSDNEEDSKIELK 22 2 G5E972;P42167;H0YJH7;P42167-2;P42167-3 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 2 0 QNGS(0.602)NDS(0.398)DRY(0.017)S(0.982)DNEEDSKIELK 90.974 0.00098743 514510000 292010 185530 69912 150810 159850 218170 360960 246440 163730 442550 TRUE FALSE FALSE 271541.6069 170827.9271 96983.79871 351093.3015 139800.1225 191254.4036 270643.9902 190330.9917 177922.2482 331732.5995 0.81855569 0.514956707 0.292355345 1.058362374 0.421424131 0.576531833 0.815849846 0.57374823 0.536342369 1 18.33966127 -10.89937127 2.544308225 1.210757913 0.619929647 0.225476152 0.209473602 43528245.98 24253777.82 54932336.11 0.052940711 1.26E-11 10.89937127 -0.590828266 QNGSNDS(ph)DRYS(ph)DNEEDSKIELK ddPTM_HeLa_A485_30min_R1 3 QNGSNDSDRYSDNEEDSKIELK 22 2 G5E972;P42167;H0YJH7;P42167-2;P42167-3 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 2 0 QNGS(0.071)NDS(0.929)DRY(0.011)S(0.989)DNEEDSKIELK;QNGS(0.002)NDS(0.969)DRY(0.147)S(0.88)DNEEDS(0.001)KIELK;QNGS(0.098)NDS(0.902)DRYS(1)DNEEDSKIELK ;; 207.18 3.11E-27 1354650000 939680 520870 198310 1275270 485320 638340 1092010 1622130 421846 3407540 TRUE FALSE FALSE 1148708.574 581781.2155 271673.1214 1344934.771 436999.8367 671762.4953 858693.1426 1224300.074 506506.6228 2558102.989 0.44904704 0.227426815 0.10620101 0.52575474 0.170829649 0.262601818 0.335675751 0.478596866 0.198000872 1 21.28664292 -13.77014685 0.398668892 10 0.291287618 0.705169912 0.134193647 318.3739588 2.716428122 2476.449369 0.082637139 1.70E-14 13.77014685 -9.708712382 QNGSNDS(ph)DRYS(ph)DNEEDSKIELK ddPTM_HeLa_A486_30min_R1 1 QNGSNDSDRYSDNEEDSKIELK 22 2 G5E972;P42167;H0YJH7;P42167-2;P42167-3 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 2 0 QNGS(0.472)NDS(0.528)DRY(0.012)S(0.988)DNEEDSKIELK 91.113 0.00097854 467510000 318940 216080 112870 155170 188880 313100 407500 325420 231410 600420 TRUE FALSE FALSE 296583.953 198957.0339 156576.2868 361243.6019 165188.9092 274472.9054 305539.1899 251328.9699 251468.8051 450070.9239 0.658971591 0.44205707 0.347892473 0.802637057 0.367028618 0.609843673 0.678868982 0.55842081 0.558731506 1 18.77979284 -14 0.250698093 3.715743499 0.51585908 0.496810468 0.134030964 150.0848584 1.488881318 208.7641155 0.188492048 1.00E-14 14 -3.19988442 QNGSNDSDRYS(ph)DNEEDSKIELK ddPTM_HeLa_A485_30min_R1 8 QNGSNDSDRYSDNEEDSKIELK 22 2 G5E972;P42167;H0YJH7;P42167-2;P42167-3 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDS(0.001)DRYS(0.999)DNEEDSKIELK;QNGSNDS(0.002)DRY(0.001)S(0.99)DNEEDS(0.007)KIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK ;;;;;;; 273 3.36E-73 13405340000 4095800 2132729 986765 5268230 2177859 2889630 4711580 6891100 1932213 14225820 TRUE FALSE FALSE 5006896.58 2382133.104 1351810.436 5556020.065 1961023.711 3040926.559 3704912.443 5201046.92 2319990.426 10679584.88 0.468828764 0.223054841 0.126578931 0.520246819 0.18362359 0.284742019 0.346915398 0.487008341 0.217236012 1 23.34835223 -13.98542999 0.37150075 9.999999993 0.29880902 0.709159826 0.130677762 282.5281922 2.204314544 2040.788575 0.089207946 1.03E-14 13.98542999 -9.701190973 QNGSNDSDRYS(ph)DNEEDSKIELK ddPTM_HeLa_A486_30min_R1 8 QNGSNDSDRYSDNEEDSKIELK 22 2 G5E972;P42167;H0YJH7;P42167-2;P42167-3 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDS(0.003)DRYS(0.996)DNEEDSKIELK;QNGSNDSDRYS(0.994)DNEEDS(0.005)KIELK;QNGS(0.003)NDS(0.003)DRY(0.018)S(0.976)DNEEDSKIELK;QNGSNDSDRYS(0.999)DNEEDS(0.001)KIELK;QNGSNDSDRYS(1)DNEEDSKIELK;QNGSNDS(0.001)DRYS(0.999)DNEEDSKIELK;QNGSNDSDRYS(1)DNEEDSKIELK ;;;;;;; 196.15 4.41E-21 8556740000 3634040 2415049 977677 1594453 2136160 3026310 4182480 3306770 2196849 5246400 TRUE FALSE FALSE 3379312.562 2223671.722 1356259.717 3711967.163 1868222.894 2652954.641 3135979.266 2553890.657 2387273.64 3932667.292 0.859292768 0.565436015 0.34487019 0.943880295 0.475052364 0.674594224 0.797417893 0.6494042 0.607036767 1 21.90707671 -13.99999989 0.366668316 5.466005244 0.643873377 0.266370144 0.169220325 699.5307405 5.478689223 2471.669463 0.118735582 1.00E-14 13.99999989 -4.822131867 QNGSNDSDRYS(ph)DNEEGK ddPTM_HeLa_A485_30min_R1 5 QNGSNDSDRYSDNEEGK 17 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGSNDS(0.003)DRYS(0.997)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDS(0.002)DRYS(0.998)DNEEGK ;;;; 323.13 5.20E-80 4777840000 2903503 2110857 1445328 4559593 2359548 2263896 3414018 2537829 1963419 5335051 TRUE FALSE FALSE 3549377.225 2357703.364 1980014.972 4808672.02 2124623.116 2382430.094 2684585.164 1915422.459 2357459.184 4005120.97 0.886209743 0.588672198 0.494370829 1.200630906 0.53047664 0.594845976 0.67028816 0.478243347 0.588611231 1 21.93341439 -10.20708308 4.668425528 1.000051218 0.666311034 0.183625828 0.208428683 0.000143321 2.43E-05 0.201036791 0.04874892 6.21E-11 10.20708308 -0.333740184 QNGSNDSDRYS(ph)DNEEGK ddPTM_HeLa_A486_30min_R1 5 QNGSNDSDRYSDNEEGK 17 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK;QNGSNDSDRYS(1)DNEEGK ;;;; 315.14 1.76E-79 9648270000 5287028 5070550 2176036 2887993 3407864 5935610 7158750 6119650 4262431 8809840 TRUE FALSE FALSE 4916434.639 4668741.151 3018655.415 6723393.655 2980417.92 5203334.787 5367555.032 4726339.286 4631901.951 6603798.722 0.74448584 0.706978112 0.457108937 1.018110021 0.45131871 0.787930554 0.812798097 0.715700082 0.701399626 1 22.65486472 -13.99999995 0.233332412 2.595174869 0.678565238 0.240031257 0.155724983 232.9374051 2.330704201 175.5944878 0.249242691 1.00E-14 13.99999995 -1.916609631 QNGSNDSDRYS(ph)DNEEGKK ddPTM_HeLa_A485_30min_R1 1 QNGSNDSDRYSDNEEGKK 18 2 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGSNDSDRYS(1)DNEEGKK 154.13 8.73E-09 286030000 212260 136980 89507 410840 206990 205800 337590 311560 155920 545270 TRUE FALSE FALSE 259476.5047 152998.6194 122619.364 433283.1489 186381.3488 216575.3698 265461.1386 235149.4215 187211.7138 409344.224 0.633883391 0.373765185 0.299550737 1.05848116 0.455316914 0.529078846 0.648503443 0.574453987 0.457345439 1 18.64295501 -10.97579577 2.949941308 1.373536642 0.55971434 0.311516753 0.196710215 277125532.1 240565811.7 708127928.4 0.049120768 1.06E-11 10.97579577 -0.813822301 QNGSNDSDRYS(ph)DNEEGKK ddPTM_HeLa_A486_30min_R1 3 QNGSNDSDRYSDNEEGKK 18 2 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGSNDS(0.001)DRYS(0.999)DNEEGKK;QNGSNDSDRYS(1)DNEEGKK;QNGSNDSDRYS(1)DNEEGKK ;; 163.18 2.25E-12 950100000 635710 537790 220988 488720 432250 797220 1038600 885030 468110 1357520 TRUE FALSE FALSE 591150.0118 495173.5618 306560.4719 1137764.859 378033.1744 698867.1019 778731.2948 683527.9891 508686.1517 1017588.156 0.580932481 0.486614903 0.301261832 1.118099549 0.371499189 0.686787771 0.765271579 0.671713782 0.499893939 1 19.95672235 -14 0.158394148 2.359454932 0.511335556 0.222628668 0.217738273 207.86527 1.900220316 89.66648076 0.937955993 1.00E-14 14 -1.848119376 QNGSNDSDRYS(ph)DNEEGKKK ddPTM_HeLa_A485_30min_R1 5 QNGSNDSDRYSDNEEGKKK 19 3 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGSNDSDRYS(1)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDS(0.001)DRYS(0.999)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK ;;;; 225.88 6.41E-35 10848140000 2221990 1199920 557868 4385770 2204730 2262440 5191600 4942220 1347250 6053790 TRUE FALSE FALSE 2716264.01 1340240.206 764246.588 4625353.51 1985219.34 2380897.86 4082372.249 3730132.796 1617630.717 4544691.565 0.597678406 0.294902346 0.168162476 1.017748607 0.436821578 0.523885466 0.898272675 0.820766986 0.355938504 1 22.11575096 -6.463990792 0.117291932 1.226795072 4.04E-15 0.232452752 0.254291071 21.27683659 1.246665042 4.604984079 7.557911811 3.44E-07 6.463990792 -1.226795072 QNGSNDSDRYS(ph)DNEEGKKK ddPTM_HeLa_A486_30min_R1 7 QNGSNDSDRYSDNEEGKKK 19 3 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGSNDSDRYS(1)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDS(0.001)DRYS(0.999)DNEEGKKK;QNGSNDS(0.007)DRY(0.012)S(0.982)DNEEGKKK;QNGSNDSDRYS(1)DNEEGKKK;QNGSNDS(0.014)DRYS(0.985)DNEEGKKK ;;;;;; 234.3 1.92E-45 16519480000 1515095 1106446 366060 1561294 1071169 1848544 3078950 2721551 884646 3696800 TRUE FALSE FALSE 1408894.664 1018767.189 507808.2354 3634771.335 936812.9958 1620489.436 2308564.144 2101913.248 961327.8276 2771097.218 0.508424842 0.367640364 0.183251685 1.311672255 0.338065727 0.5847826 0.833086667 0.758512994 0.346912343 1 21.40202589 -14 0.059429331 2.354946424 1.15E-09 0.144902475 0.308012669 838.4941666 3.63502026 170.1710147 28.78665141 1.00E-14 14 -2.354946423 QNLFTTWSHHLQQANIQFR ddPTM_HeLa_A485_30min_R1 1 QNLFTTWSHHLQQANIQFR 19 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 225.69 1.17E-29 18510000 8159.8 11091 11899 6595.3 16920 11066 12492 12671 8811.6 11011 FALSE FALSE TRUE 9974.919359 12387.99597 16300.93526 6955.584539 15235.38539 11645.39865 9822.98215 9563.417383 10580.0073 8266.160342 1.206717381 1.49863969 1.972008113 0.841452894 1.843103056 1.408803866 1.188336754 1.156935867 1.279917986 1 13.01300163 -6.721077614 4.362728561 1.166383664 1.479995607 0.200830594 0.299775362 0.348828379 14.41294804 0.118634357 0.086845256 1.90E-07 6.721077614 0.313611943 QNLFTTWSHHLQQANIQFR ddPTM_HeLa_A486_30min_R1 2 QNLFTTWSHHLQQANIQFR 19 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8YFZ7;A0A2R8Y6H2;H0YJ21 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 228.39 4.85E-30 48514000 19045.6 21468 20859.5 6069.4 29264 18876.4 22748 23089 21688 14117.4 FALSE FALSE TRUE 17710.60179 19766.79749 28936.85704 14129.86993 25593.43624 16547.62169 17056.2098 17832.13873 23567.9333 10582.31115 1.673604333 1.867909308 2.734455321 1.335234783 2.41851103 1.563705834 1.611766045 1.685089247 2.227106439 1 13.36936712 -6.321538181 24.99994573 1.659990957 2.001488909 0.152217325 0.45275033 547.4639991 227732.7149 0.153282363 0.135182365 4.77E-07 6.321538181 0.341497952 QNLWFANPGGSNS(ph)MPSQSR ddPTM_HeLa_A485_30min_R1 1 QNLWFANPGGSNSMPSQSR 19 0 M0QZ22;Q5PRF9;M0QX45 M0QZ22 SAMD4B Protein Smaug homolog 2 1 0 QNLWFANPGGS(0.003)NS(0.997)MPSQSR 152.01 1.22E-08 89667000 0 0 0 2774.8 0 2222.3 2473.7 0 0 0 TRUE FALSE FALSE 0 0 0 2926.380298 0 2338.656192 1945.173787 0 0 0 0 QNLWFANPGGSNS(ph)MPSQSR ddPTM_HeLa_A486_30min_R1 1 QNLWFANPGGSNSMPSQSR 19 0 M0QZ22;Q5PRF9;M0QX45 M0QZ22 SAMD4B Protein Smaug homolog 2 1 0 QNLWFANPGGS(0.002)NS(0.996)MPS(0.001)QS(0.001)R 132.79 3.01E-06 54523000 62564 70007 47634 28685 71880 62086 85483 79175 58342 80404 TRUE FALSE FALSE 58178.58668 64459.39036 66079.16048 66780.12966 62864.14015 54426.46056 64094.24925 61148.58088 63399.13153 60270.31506 0.965294219 1.069504785 1.096379875 1.108010297 1.043036528 0.903039258 1.063446395 1.014572113 1.05191306 1 15.87915999 -6.008982795 24.92429439 1.006833711 1.064656193 0.179978307 0.053758065 701.0555689 1945201.138 0.01741132 0.018804486 9.80E-07 6.008982795 0.057822483 QNNT(ph)FPFFSEGITR ddPTM_HeLa_A485_30min_R1 1 QNNTFPFFSEGITR 14 0 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-3 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 QNNT(0.999)FPFFS(0.001)EGITR 101.42 0.00070654 0 27634 39688 50128 34445 42063 38883 51926 58084 29428 35874 TRUE FALSE FALSE 33781.08796 44329.16636 68672.4332 36326.64313 37875.06003 40918.85376 40831.5859 43838.80793 35333.92967 26931.27201 1.254344316 1.646010866 2.54991421 1.348864737 1.406359863 1.519380657 1.516140266 1.627803095 1.312003743 1 14.71699475 -8.572726962 0.317127438 0.880140851 1.733986021 0.244405987 0.3382975 5.125469751 1.020426952 1.334476205 0.4251931 2.67E-09 8.572726962 0.85384517 QNPEQS(ph)ADEDAEK ddPTM_HeLa_A485_30min_R1 2 QNPEQSADEDAEK 13 0 Q99613-2;Q99613;B5ME19;H3BPE3 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QNPEQS(1)ADEDAEK;QNPEQS(1)ADEDAEK ; 330.82 7.30E-81 1431640000 1020540 1038260 438570 1003410 521000 823000 992600 901650 512180 1115560 TRUE FALSE FALSE 1247555.602 1159675.475 600815.2934 1058223.748 469127.4107 866091.0074 780522.9012 680518.9238 614969.828 837471.4224 1.489669461 1.384734385 0.717415875 1.26359386 0.560171247 1.034173805 0.931999445 0.812587637 0.734317389 1 19.67568044 -4.688468647 6.285839369 0.885020211 1.455110157 0.588388657 0.186118757 0.130044714 8.571130483 0.044860609 0.120665906 2.05E-05 4.688468647 0.570089946 QNPEQS(ph)ADEDAEK ddPTM_HeLa_A486_30min_R1 2 QNPEQSADEDAEK 13 0 Q99613-2;Q99613;B5ME19;H3BPE3 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QNPEQS(1)ADEDAEK;QNPEQS(1)ADEDAEK ; 282.52 7.42E-49 1046750000 1066960 833550 280420 305550 415410 699720 801310 680760 571840 1626830 TRUE FALSE FALSE 992171.6138 767496.4623 389006.1339 711335.8416 363305.4043 613395.6606 600813.7626 525765.8089 621407.5516 1219461.179 0.813614759 0.629373428 0.318998375 0.583319792 0.297922895 0.503005484 0.492687896 0.431145999 0.509575509 1 20.2178124 -8.083800386 20.00661618 1 0.499257379 0.518998518 0.141613025 6119.03972 1460868.396 0.138435976 0.035743968 8.25E-09 8.083800386 -0.500742621 QNPHDGVVT(ph)PAAS(ph)PSLPQPGLQMPGQWGPVQGGPQPSGQHR ddPTM_HeLa_A485_30min_R1 2 QNPHDGVVTPAASPSLPQPGLQMPGQWGPVQGGPQPSGQHR 41 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 QNPHDGVVT(1)PAAS(0.994)PS(0.006)LPQPGLQMPGQWGPVQGGPQPSGQHR;QNPHDGVVT(1)PAAS(0.949)PS(0.051)LPQPGLQMPGQWGPVQGGPQPSGQHR ; 186.48 1.66E-22 1265380000 46566 46470 43067 51062 56355 45814 57586 57771 45731 51099 TRUE FALSE FALSE 56924.44605 51904.26226 58999.27547 53851.38776 50744.09833 48212.7502 45282.28067 43602.57167 54908.79223 38360.95971 1.483916109 1.353049107 1.538003114 1.403807104 1.322805756 1.256818144 1.180426168 1.136639229 1.431371703 1 15.22735119 -6.030844913 1.592585523 1.200421668 1.450827953 0.534021341 0.108695732 0.308867836 1.588546164 0.041744478 0.045254887 9.31E-07 6.030844913 0.250406285 QNPHDGVVT(ph)PAAS(ph)PSLPQPGLQMPGQWGPVQGGPQPSGQHR ddPTM_HeLa_A486_30min_R1 1 QNPHDGVVTPAASPSLPQPGLQMPGQWGPVQGGPQPSGQHR 41 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 QNPHDGVVT(1)PAAS(0.958)PS(0.042)LPQPGLQMPGQWGPVQGGPQPSGQHR 94.434 2.04E-05 275630000 44402 48160 40367 6392.3 45727 38106 36980 40849 42243 27929 TRUE FALSE FALSE 41289.64909 44343.6262 55998.18347 14881.59745 39991.49327 33404.86915 27727.21287 31548.57443 45904.65725 20935.39661 1.972241074 2.118117322 2.674808818 0.710834274 1.910233372 1.595616733 1.324417845 1.506948973 2.192681519 1 14.35365663 -5.243001001 24.92952442 1.502475563 2.241361851 0.415445161 0.428686403 820.8983358 1109890.261 0.112677723 0.19470013 5.71E-06 5.243001001 0.738886287 QNS(ph)DPTSEGPGPSPNPPAWVRPDNEAPPKVPQR ddPTM_HeLa_A485_30min_R1 1 QNSDPTSEGPGPSPNPPAWVRPDNEAPPKVPQR 33 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 QNS(0.966)DPT(0.029)S(0.006)EGPGPSPNPPAWVRPDNEAPPKVPQR 133.17 8.29E-07 484460000 80118 91088 55312 96586 88342 97072 156000 161090 77841 188130 TRUE FALSE FALSE 97939.9727 101739.9492 75774.21052 101862.2486 79546.36029 102154.5398 122669.3256 121582.4249 93462.9747 141232.6533 0.693465501 0.720371294 0.536520477 0.721237237 0.563229242 0.723306809 0.868562069 0.860866252 0.661766047 1 17.10771416 -6.577055254 4.600489651 0.834619215 0.648190927 0.492147754 0.095725519 0.184213952 8.214680935 0.03591237 0.027802273 2.65E-07 6.577055254 -0.186428288 QNS(ph)PVTS(ph)PGSS(ph)PLAQR ddPTM_HeLa_A486_30min_R1 1 QNSPVTSPGSSPLAQR 16 0 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 3 0 QNS(1)PVT(0.003)S(0.997)PGS(0.009)S(0.991)PLAQR 216.35 1.95E-25 0 229110 242580 212640 132410 291160 242530 330770 277420 191040 294400 TRUE FALSE FALSE 213050.5721 223357.0773 294979.9027 308257.1716 254639.9978 212609.1145 248007.8475 214257.522 207599.501 220680.3238 0.965426226 1.012129552 1.336684203 1.396849372 1.15388628 0.963425786 1.123833078 0.970895449 0.940725016 1 17.75159848 -6.174444372 5.567481141 1.006085242 1.187923491 0.307038635 0.129571967 0.322224147 16.05216542 0.048200373 0.048154168 6.69E-07 6.174444372 0.181838249 QNS(ph)TTTGVSVIMNTALDKEGQIFCSK ddPTM_HeLa_A485_30min_R1 1 QNSTTTGVSVIMNTALDKEGQIFCSK 26 1 Q8N568-2;Q8N568;Q8N568-3 Q8N568-2 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 QNS(0.832)T(0.075)T(0.075)T(0.014)GVS(0.003)VIMNT(0.001)ALDKEGQIFCSK 54.683 0.016133 39870000 13605 14472 13942 15494 21597 15095 19484 24900 10525 19919 TRUE FALSE FALSE 16631.38531 16164.37451 19099.72598 16340.39799 19446.72685 15885.35086 15321.08423 18793.23596 12637.27096 14953.55988 1.112202408 1.080971664 1.277269501 1.092743007 1.300474737 1.062312318 1.024577716 1.256773377 0.84510117 1 13.86820136 -7.766177229 24.99999451 0.922550543 1.14867744 0.467064774 0.097551433 107.320515 566259.8448 0.081267781 0.02368394 1.71E-08 7.766177229 0.226126897 QNSDPT(ph)SEGPGPSPNPPAWVRPDNEAPPKVPQR ddPTM_HeLa_A486_30min_R1 1 QNSDPTSEGPGPSPNPPAWVRPDNEAPPKVPQR 33 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 QNS(0.113)DPT(0.832)S(0.055)EGPGPSPNPPAWVRPDNEAPPKVPQR 146.32 1.86E-09 426230000 65954 53943 23954 17479 53558 59152 75635 75430 43558 97478 TRUE FALSE FALSE 61330.96519 49668.36022 33229.63031 40691.99534 46840.25623 51854.42765 56710.32301 58256.23563 47333.64251 73068.87432 0.839358287 0.679747166 0.454771346 0.556899168 0.641042532 0.709665068 0.776121482 0.797278406 0.647794878 1 16.15696936 -6.515379297 2.081436577 0.791464524 0.62165484 0.302088087 0.121334358 0.453650704 3.943874772 0.055270604 0.042683272 3.05E-07 6.515379297 -0.169809684 QNSES(ph)ERRS(ph)PSSEDDRDER ddPTM_HeLa_A485_30min_R1 1 QNSESERRSPSSEDDRDER 19 3 Q9BVA0 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 2 0 QNS(0.149)ES(0.643)ERRS(0.575)PS(0.475)S(0.157)EDDRDER 80.813 0.0013632 145920000 32675 28030 37941 41429 55142 36440 47173 49195 39529 55423 TRUE FALSE FALSE 39943.44102 31307.86467 51976.95476 43692.16137 49651.86886 38347.94205 37094.10318 37129.84912 47462.10772 41607.06608 0.960015805 0.752465089 1.249233836 1.05011397 1.19335184 0.921668977 0.891533739 0.89239287 1.14072229 1 15.34454094 -9.218932469 14.21205964 1 1.003095752 0 0.146265599 0 0 0.145374264 0.035258438 6.04E-10 9.218932469 0.003095752 QNSESERRS(ph)PS(ph)SEDDRDER ddPTM_HeLa_A486_30min_R1 2 QNSESERRSPSSEDDRDER 19 3 Q9BVA0 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 2 0 QNS(0.264)ES(0.264)ERRS(0.46)PS(0.772)S(0.239)EDDRDER;QNS(0.002)ES(0.014)ERRS(0.967)PS(0.797)S(0.22)EDDRDER ; 75.71 0.002274 366960000 96419 135859 143871 64231 211431 148752 183191 182693 136334 147711 TRUE FALSE FALSE 89660.52601 125093.0381 199581.7042 149533.0141 184911.3525 130400.4906 137354.6742 141097.7921 148151.5409 110723.2042 0.809771779 1.129781594 1.802528257 1.350511983 1.670032527 1.177716014 1.240522935 1.274329018 1.338035166 1 16.75659807 QNSPAGNKENIKPNET(ph)SPSFSK ddPTM_HeLa_A485_30min_R1 1 QNSPAGNKENIKPNETSPSFSK 22 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 QNSPAGNKENIKPNET(0.886)S(0.113)PSFSK 130.23 1.80E-06 636680000 294850 184730 119950 351440 333570 319370 519920 592590 243400 525710 TRUE FALSE FALSE 360438.3653 206332.5666 164324.4965 370638.2773 300358.5996 336091.7194 408834.8446 447256.3734 292248.1474 394660.172 0.913287914 0.522810715 0.416369596 0.939132711 0.761056273 0.851597762 1.035916147 1.133269595 0.740505803 1 18.59025141 -5.884343676 1.201352012 0.975142701 0.630975653 0.360951435 0.171599636 0.479628035 1.4623074 0.075061854 0.096414439 1.31E-06 5.884343676 -0.344167049 QNSPAGNKENIKPNET(ph)SPSFSK ddPTM_HeLa_A486_30min_R1 2 QNSPAGNKENIKPNETSPSFSK 22 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 QNSPAGNKENIKPNET(0.597)S(0.402)PS(0.001)FSK;QNSPAGNKENIKPNET(0.897)S(0.093)PS(0.01)FSK ; 140.09 2.16E-07 1799290000 1082120 815660 323080 506190 857500 1249910 1440540 1341250 660910 1687860 TRUE FALSE FALSE 1006268.976 751024.131 448185.2284 1178435.901 749944.3541 1095708.812 1080101.656 1035876.654 718198.2109 1265208.87 0.795338224 0.593596954 0.354238133 0.931416092 0.592743516 0.86602998 0.853694343 0.81873964 0.567651894 1 20.27094414 -5.277252668 24.88529604 0.792584738 0.582311656 0.285019371 0.161296146 991.3880019 1560140.128 0.044514567 0.066270797 5.28E-06 5.277252668 -0.210273082 QNTAWDTETS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QNTAWDTETSPR 12 0 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 QNTAWDTET(0.001)S(0.999)PR 267.47 6.78E-34 539750000 613830 700090 528500 190060 655270 596030 602030 590820 496460 638010 TRUE FALSE FALSE 570803.6868 644612.3187 733149.3537 442469.2851 573079.9264 522497.8786 451395.7264 456303.1835 539493.5525 478248.1433 1.193530377 1.347861623 1.532989441 0.92518767 1.198289914 1.092524636 0.943852543 0.954113863 1.128061991 1 18.86739984 -5.26838787 24.99984114 1.038119698 1.357100598 0.638098654 0.111638504 343.3992588 1235509.515 0.031979479 0.048603278 5.39E-06 5.26838787 0.3189809 QPAPGGGGGGGPS(ph)PCGPGGGGR ddPTM_HeLa_A486_30min_R1 1 QPAPGGGGGGGPSPCGPGGGGR 22 0 Q9H6S0;D6RF50;D6RA70 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 QPAPGGGGGGGPS(1)PCGPGGGGR 147.03 1.67E-09 107540000 26916 32470 27176 8651.9 36654 30160 30378 31216 26819 26783 TRUE FALSE FALSE 25029.32739 29896.95895 37699.275 20142.06044 32056.51354 26439.16584 22777.10309 24108.79824 29143.69251 20076.36247 1.246706291 1.489162142 1.8777941 1.003272404 1.596729167 1.31693009 1.134523404 1.2008549 1.451642077 1 14.29321028 -6.514423043 12.26499183 1.215203902 1.446259139 0.19344283 0.235731617 0.992602567 1431.537608 0.08526065 0.070157141 3.06E-07 6.514423043 0.231055237 QPAQELS(ph)PTPGGTAHQALK ddPTM_HeLa_A485_30min_R1 4 QPAQELSPTPGGTAHQALK 19 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 QPAQELS(0.962)PT(0.038)PGGTAHQALK;QPAQELS(0.97)PT(0.03)PGGTAHQALK;QPAQELS(0.914)PT(0.086)PGGTAHQALK;QPAQELS(0.982)PT(0.018)PGGTAHQALK ;;; 258.09 3.45E-58 7737300000 3168560 3884840 3139570 3409290 4222730 4213550 5021110 5758500 3458320 4528720 TRUE FALSE FALSE 3873395.241 4339138.244 4301027.591 3595530.88 3802300.174 4434164.963 3948308.83 4346218.846 4152373.102 3399793.449 1.139303107 1.276294666 1.265084969 1.05757333 1.118391523 1.304245399 1.161337855 1.278377322 1.221360405 1 21.69701567 -10.7328815 2.453760005 0.95498855 1.203741497 0.382148214 0.077206916 23993721.68 17247856.54 6583277.142 0.020601774 1.85E-11 10.7328815 0.248752947 QPAQELS(ph)PTPGGTAHQALK ddPTM_HeLa_A486_30min_R1 3 QPAQELSPTPGGTAHQALK 19 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 QPAQELS(0.989)PT(0.011)PGGTAHQALK;QPAQELS(0.998)PT(0.002)PGGTAHQALK;QPAQELS(0.999)PT(0.001)PGGTAHQALK ;; 256.75 3.81E-58 6289400000 2766870 2856020 1926010 983150 2844310 2665060 3030840 3307800 2358750 3424030 TRUE FALSE FALSE 2572926.701 2629698.574 2671812.652 2288822.886 2487550.118 2336271.994 2272491.775 2554686.149 2563208.349 2566630.601 1.00245306 1.024572283 1.040980596 0.891761707 0.969188989 0.910248632 0.885398847 0.995346252 0.998666636 1 21.29144424 -5.243290471 24.80118775 0.946333994 1.022859016 0.388132077 0.041574525 766.6485354 1047652.952 0.011638993 0.020107595 5.71E-06 5.243290471 0.076525022 QPASAQSTPSTTPHSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 QPASAQSTPSTTPHSSPK 18 0 A0A087WT18;Q96A73-2;Q96A73 A0A087WT18 KIAA1191 Putative monooxygenase p33MONOX 1 0 QPASAQSTPSTTPHS(0.011)S(0.989)PK;QPASAQSTPSTTPHS(0.249)S(0.751)PK ; 207.13 1.43E-25 536870000 230600 289330 233450 273140 398090 318510 479710 490510 286640 501840 TRUE FALSE FALSE 281896.1744 323164.6267 319812.8697 288060.9466 358454.7618 335186.6911 377216.0396 370211.6534 344166.0188 376740.5237 0.748250206 0.85779099 0.848894264 0.764613649 0.951463247 0.889701718 1.001262184 0.982670114 0.913535967 1 18.5232117 -5.774253217 24.92115342 0.954476722 0.811809477 0.726278053 0.045490611 120.8027961 234943.9872 0.014107752 0.016098397 1.68E-06 5.774253217 -0.142667246 QPASAQSTPSTTPHSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 QPASAQSTPSTTPHSSPK 18 0 A0A087WT18;Q96A73-2;Q96A73 A0A087WT18 KIAA1191 Putative monooxygenase p33MONOX 1 0 QPASAQSTPSTTPHS(0.251)S(0.749)PK;QPASAQSTPSTTPHS(0.249)S(0.751)PK ; 202.43 2.23E-25 430290000 364570 309620 201706 26987 318900 350220 435350 378750 312200 380620 TRUE FALSE FALSE 339015.5256 285084.5836 279811.9651 62827.09985 278900.5884 307013.4172 326420.8253 292516.8931 339261.7474 285310.2746 1.18823455 0.999208963 0.980728666 0.22020623 0.977534331 1.076068563 1.144090677 1.025258882 1.189097546 1 18.12217218 -5.994932543 24.99996276 1.084805587 0.833925912 0.180688693 0.240054507 252.2751181 1244568.364 0.078928649 0.089201665 1.01E-06 5.994932543 -0.250879675 QPCPS(ph)ESDIITEEDKSK ddPTM_HeLa_A485_30min_R1 2 QPCPSESDIITEEDKSK 17 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QPCPS(0.921)ES(0.074)DIIT(0.005)EEDKSK;QPCPS(0.972)ES(0.028)DIITEEDKSK ; 102.94 0.00014319 513640000 539150 395420 342940 907370 683890 532150 939970 831410 487820 1200210 TRUE FALSE FALSE 659082.0575 441660.9293 469807.7769 956937.3255 615799.5103 560012.5511 739137.7307 627505.3939 585720.9994 901019.7352 0.731484596 0.490178974 0.521417854 1.062060339 0.683447306 0.621531948 0.820334674 0.696439123 0.650064562 1 19.78119918 -14 0.214464295 2.442324412 0.658542762 0.257068726 0.1526726 223.5628644 2.23353307 139.554192 0.325223672 1.00E-14 14 -1.783781649 QPCPS(ph)ESDIITEEDKSK ddPTM_HeLa_A486_30min_R1 2 QPCPSESDIITEEDKSK 17 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QPCPS(0.918)ES(0.079)DIIT(0.002)EEDKSK;QPCPS(0.998)ES(0.002)DIITEEDKSK ; 111.88 6.90E-05 567700000 604050 595180 315676 423510 598360 710680 1116730 1045900 532130 1208540 TRUE FALSE FALSE 561709.2143 548015.7692 437914.2013 985952.683 523308.1093 623003.5273 837312.3424 807771.4018 578255.4569 905913.7177 0.620047145 0.604931528 0.483395044 1.088351643 0.577657782 0.687707356 0.924273831 0.891664831 0.638311845 1 19.78901412 -3.038140387 0.123856927 1.053552155 1.63E-11 0.26425584 0.167748231 75.73478209 1.07156273 1.301121243 13.28506099 0.000915924 3.038140387 -1.053552155 QPDISCILGTGGKS(ph)PR ddPTM_HeLa_A485_30min_R1 1 QPDISCILGTGGKSPR 16 1 P57740;G3V1T4;P57740-2 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 QPDISCILGTGGKS(1)PR 172.69 1.26E-12 1878800000 883800 1003800 769080 960960 1250200 1110400 1357100 1441500 804390 1285800 TRUE FALSE FALSE 1080398.261 1121185.678 1053594.696 1013454.812 1125725.698 1168538.827 1067144.499 1087969.865 965823.6947 965273.7234 1.119266209 1.161520977 1.09149837 1.04991443 1.166224327 1.210577682 1.105535635 1.127110206 1.000569757 1 19.88057858 -7.760313633 7.611609715 0.999343625 1.129477233 0.603500797 0.041719986 0.082542989 33.59547371 0.035813358 0.011391811 1.74E-08 7.760313633 0.130133608 QPDISCILGTGGKS(ph)PR ddPTM_HeLa_A486_30min_R1 2 QPDISCILGTGGKSPR 16 1 P57740;G3V1T4;P57740-2 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 QPDISCILGTGGKS(1)PR;QPDISCILGT(0.195)GGKS(0.805)PR ; 168.3 2.22E-12 3958300000 2636200 2511900 1848510 1047250 2785400 2412500 3070100 2922200 2043020 3046000 TRUE FALSE FALSE 2451415.993 2312847.896 2564302.577 2438050.925 2436029.159 2114870.279 2301928.508 2256878.851 2220110.619 2283261.774 1.073646492 1.012957832 1.123087421 1.067792994 1.066907521 0.926249589 1.008175468 0.988445073 0.972341693 1 21.12266484 -6.233049077 22.62568178 0.980141016 1.068723112 0.661789857 0.03210612 137.7600938 109787.6659 0.010424999 0.010421617 5.85E-07 6.233049077 0.088582096 QPDLFKDIINMLFYHDR ddPTM_HeLa_A486_30min_R1 1 QPDLFKDIINMLFYHDR 17 1 E9PK47;P06737-2;P06737 E9PK47 PYGL "Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form" 0 0 93.765 0.0016503 1186100 3702.5 2123.7 1541.1 2002.5 3389.5 2222.7 2409.2 2709.6 1721.1 3284.6 FALSE FALSE TRUE 3442.97387 1955.410278 2137.855192 4661.921201 2964.357304 1948.485873 1806.392678 2092.68323 1870.286334 2462.114781 1.398380732 0.79419948 0.868300377 1.893462172 1.203988265 0.791387099 0.73367525 0.849953563 0.759625972 1 11.2656823 -6.252075623 9.362807075 0.811608149 1.224170647 0.327933119 0.289197819 0.269654509 234.7510035 0.103232634 0.099301481 5.60E-07 6.252075623 0.412562498 QPEKEEEEEAGES(ph)VEDIFSEVVGR ddPTM_HeLa_A485_30min_R1 3 QPEKEEEEEAGESVEDIFSEVVGR 24 1 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 QPEKEEEEEAGES(1)VEDIFSEVVGR;QPEKEEEEEAGES(1)VEDIFSEVVGR;QPEKEEEEEAGES(0.997)VEDIFS(0.003)EVVGR ;; 163.92 2.76E-14 144106000 78263 73729 59415 120162 122657 76559 137721 120177 81961 164641 TRUE FALSE FALSE 95672.33435 82350.96519 81395.08096 126726.1458 110444.8384 80567.51086 108295.7833 90703.40232 98409.82091 123599.0287 0.774054095 0.666275181 0.658541429 1.025300499 0.893573676 0.651845825 0.876186362 0.733852064 0.796202219 1 16.91530788 -14 0.371936535 3.841472347 0.780978242 0.24237454 0.113372033 872.1988285 6.720370999 1993.232482 0.084079703 1.00E-14 14 -3.060494105 QPEKEEEEEAGES(ph)VEDIFSEVVGR ddPTM_HeLa_A486_30min_R1 3 QPEKEEEEEAGESVEDIFSEVVGR 24 1 Q8TDD1;Q8TDD1-2 Q8TDD1;Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 QPEKEEEEEAGES(1)VEDIFSEVVGR;QPEKEEEEEAGES(1)VEDIFSEVVGR;QPEKEEEEEAGES(1)VEDIFSEVVGR ;; 131.5 1.70E-06 197182000 84999 80170 53893 58913 87259 104439 126151 114822 79211 137911 TRUE FALSE FALSE 79041.00904 73817.03723 74761.8129 137152.4413 76314.16256 91554.37804 94586.68551 88679.53715 86077.07326 103377.188 0.7645885 0.71405538 0.723194492 1.326718631 0.738210857 0.885634247 0.91496671 0.857825009 0.832650558 1 16.65755834 QPEYSPES(ph)PR ddPTM_HeLa_A485_30min_R1 4 QPEYSPESPR 10 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYSPES(1)PR ;;; 228.62 2.35E-17 10947580000 1699380 1789410 2025210 1766970 2240930 1668250 1927270 1582680 1943980 2201090 TRUE FALSE FALSE 2077401.218 1998665.934 2774419.455 1863495.097 2017815.141 1755596.99 1515493.02 1194525.248 2334118.955 1652398.771 1.257203318 1.209554236 1.679025368 1.127751442 1.221142969 1.06245358 0.917147269 0.722903738 1.412563962 1 20.65613046 -5.970938064 1.58624535 0.994962517 1.351698744 0.322666719 0.207389278 0.427684276 2.200581799 0.080626749 0.091678608 1.07E-06 5.970938064 0.356736227 QPEYSPES(ph)PR ddPTM_HeLa_A486_30min_R1 4 QPEYSPESPR 10 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QPEY(0.006)S(0.291)PES(0.704)PR;QPEYSPES(1)PR;QPEYSPES(1)PR;QPEYS(0.001)PES(0.999)PR ;;; 240.37 6.72E-21 12175870000 1949830 2403090 2246100 662787 2506480 2218880 2221930 2289730 2175970 2128720 TRUE FALSE FALSE 1813156.986 2212660.396 3115850.073 1543001.631 2192093.906 1945137.146 1665979.613 1768408.463 2364584.832 1595674.656 1.136294907 1.386661365 1.952685067 0.966990122 1.373772465 1.219006104 1.044059706 1.108251269 1.481871522 1 20.6057351 -5.305971171 24.99994769 1.180289341 1.481360606 0.270570914 0.241209627 610.0241993 342463.5697 0.067689129 0.100399733 4.94E-06 5.305971171 0.301071265 QPGQVIGATTPSTGS(ph)PTNK ddPTM_HeLa_A485_30min_R1 1 QPGQVIGATTPSTGSPTNK 19 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 QPGQVIGATTPST(0.004)GS(0.996)PTNK 335.95 5.76E-124 0 90795 78193 68151 118450 110080 82412 111360 87226 76121 164960 TRUE FALSE FALSE 110992.0345 87336.99116 93362.8909 124920.6236 99120.04869 86726.96489 87567.02627 65833.68673 91397.78648 123838.5079 0.896264308 0.705249059 0.753908397 1.00873812 0.800397634 0.700323077 0.7071066 0.531609173 0.738040114 1 16.91810047 -6.189359777 4.728764605 0.704274699 0.833277751 0.100016949 0.132770423 0.402939407 17.16478308 0.044273683 0.04392599 6.47E-07 6.189359777 0.129003052 QPGS(ph)PMYRR ddPTM_HeLa_A485_30min_R1 1 QPGSPMYRR 9 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 QPGS(1)PMYRR 101.93 0.0014566 0 36570 68295 59501 31290 67525 77736 80409 128430 46113 31162 TRUE FALSE FALSE 44704.87033 76281.50616 81512.89594 32999.29347 60801.97391 81806.13676 63228.96027 96932.34113 55367.45613 23393.88689 1.910963772 3.260745275 3.484367361 1.410594726 2.59905394 3.496902295 2.702798409 4.143490202 2.366748902 1 14.51384396 -6.038272968 24.76715045 2.948448063 2.559673155 0 0.949308268 2025.649787 1310830.963 0.303903576 0.303969371 9.16E-07 6.038272968 -0.388774908 QPGS(ph)PMYRR ddPTM_HeLa_A486_30min_R1 1 QPGSPMYRR 9 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 QPGS(1)PMYRR 103.43 0.00080372 97888000 39302 32721 34340 15164 52751 29743 38365 44139 27220 41337 TRUE FALSE FALSE 36547.13276 30128.06879 47637.36766 35302.55835 46134.4777 26073.61106 28765.67122 34089.51325 29579.45152 30985.94614 1.179474481 0.972313986 1.537386254 1.139308711 1.488883944 0.841465707 0.928345744 1.100160476 0.954608627 1 14.9193264 -6.274922394 24.95816675 0.968890493 1.255617291 0.452020697 0.164218713 767.6271785 1420936.886 0.057409114 0.050909379 5.31E-07 6.274922394 0.286726798 QPGYQPPNPHPGPS(ph)SPPAAPASK ddPTM_HeLa_A485_30min_R1 1 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.607)S(0.393)PPAAPASK 151.41 8.55E-10 2150100000 311970 339830 327360 390190 420270 360070 425260 396290 370680 493040 TRUE FALSE FALSE 381366.6502 379570.1624 448464.0866 411505.0917 378426.4431 378922.7084 334399.7269 299099.2561 445072.0759 370134.2017 1.030346962 1.02549335 1.211625633 1.111772675 1.022403337 1.023744109 0.903455356 0.80808327 1.202461361 1 18.49768893 -6.126696949 2.147314546 0.966799375 1.096174226 0.174871875 0.105753538 0.495924777 4.504967811 0.040129858 0.040408943 7.47E-07 6.126696949 0.129374851 QPGYQPPNPHPGPS(ph)SPPAAPASK ddPTM_HeLa_A486_30min_R1 3 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.916)S(0.084)PPAAPASK;QPGYQPPNPHPGPS(0.749)S(0.251)PPAAPASK;QPGYQPPNPHPGPS(0.575)S(0.425)PPAAPASK ;; 169.13 1.32E-14 3142850000 1207800 1347000 874990 299076 1274610 1283170 1360790 1324510 1151600 1340230 TRUE FALSE FALSE 1123139.457 1240258.814 1213809.561 696264.0425 1114736.529 1124865.532 1020305.949 1022947.987 1251421.615 1004627.685 1.117965864 1.234545726 1.208218308 0.693056794 1.109601642 1.119683987 1.015606045 1.018235912 1.245657107 1 19.93822951 QPGYQPPNPHPGPS(ph)SPPAAPASKR ddPTM_HeLa_A486_30min_R1 2 QPGYQPPNPHPGPSSPPAAPASKR 24 1 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.772)S(0.228)PPAAPASKR;QPGYQPPNPHPGPS(0.5)S(0.5)PPAAPASKR ; 110.01 0.00023115 2066980000 922150 666090 519290 197364 900170 547450 769540 836460 471430 867320 TRUE FALSE FALSE 857512.047 613306.6025 720372.9951 459473.3662 787262.2848 479911.1851 576992.9526 646016.3178 512293.932 650137.4267 1.318970439 0.943349171 1.10803188 0.70673268 1.210916727 0.738168832 0.887493827 0.993661173 0.787977912 1 19.31038518 -1.19903272 0.964715527 0.912579992 200 0.374525194 0.150895904 894.6085819 2.239661858 0.044999176 392128.6465 0.063236421 1.19903272 199.08742 QPGYQPPNPHPGPSS(ph)PPAAPASK ddPTM_HeLa_A485_30min_R1 3 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.198)S(0.802)PPAAPASK;QPGYQPPNPHPGPS(0.007)S(0.993)PPAAPASK;QPGYQPPNPHPGPS(0.195)S(0.805)PPAAPASK ;; 171.25 1.02E-14 3051680000 893040 898560 855540 994970 1090650 950090 1187980 1020750 985520 1385910 TRUE FALSE FALSE 1091693.667 1003638.776 1172039.848 1049322.692 982061.0565 999835.2433 934158.3681 770409.462 1183304.824 1040428.143 1.049273489 0.964640165 1.126497641 1.008548931 0.943900896 0.960984428 0.897859573 0.740473494 1.137324891 1 19.9887459 -5.709811582 3.342953703 0.930652148 1.042344093 0.161491793 0.099538061 0.386717414 8.804670394 0.030443546 0.038973311 1.95E-06 5.709811582 0.111691944 QPGYQPPNPHPGPSS(ph)PPAAPASK ddPTM_HeLa_A486_30min_R1 1 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.295)S(0.705)PPAAPASK 132.8 1.46E-06 2207000000 206460 233910 131980 43393 203770 204860 210320 213410 177970 191630 TRUE FALSE FALSE 191988.2202 215374.1197 183086.1905 101021.097 178211.2665 179586.4561 157695.7115 164821.2017 193396.5829 143644.6007 1.336550203 1.499354091 1.274577601 0.703271104 1.240640203 1.250213758 1.097818579 1.147423578 1.346354697 1 17.13214424 -5.002485303 24.96478575 1.118119642 1.410205674 0.349170053 0.168892382 109.6584652 1101564.995 0.044757033 0.090711262 9.94E-06 5.002485303 0.292086032 QPGYQPPNPHPGPSS(ph)PPAAPASKR ddPTM_HeLa_A485_30min_R1 3 QPGYQPPNPHPGPSSPPAAPASKR 24 1 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.177)S(0.823)PPAAPASKR;QPGYQPPNPHPGPS(0.255)S(0.745)PPAAPASKR;QPGYQPPNPHPGPS(0.204)S(0.796)PPAAPASKR ;; 149.99 1.93E-09 3784960000 1051410 2290080 1354320 691090 1909240 2293450 2493700 3995780 1325000 1123230 TRUE FALSE FALSE 1285292.527 2557884.935 1855339.326 728842.4968 1719149.362 2413531.496 1960900.623 3015808.69 1590915.346 843229.4325 1.524250077 3.033438868 2.200278186 0.864346604 2.038768211 2.86224769 2.325465108 3.576498369 1.88669333 1 19.6855657 -6.028347835 22.79668763 2.486427734 1.937736307 0.041747465 0.807290593 606.4797795 487715.8301 0.263294251 0.264067039 9.37E-07 6.028347835 -0.548691427 QPHPQNEQSPQRSTSGYPLQEVVDDEMLGPSAPGVDPSPPCRSLGWK ddPTM_HeLa_A486_30min_R1 1 QPHPQNEQSPQRSTSGYPLQEVVDDEMLGPSAPGVDPSPPCRSLGWK 47 2 Q495Y8;P0CI01;A6NHP3 Q495Y8 SPDYE2;SPDYE6;SPDYE2B Speedy protein E2;Putative speedy protein E6;Speedy protein E2B 0 0 14.397 0.037554 326410000 96538 60887 15053 152780 49907 133960 257630 187420 58095 401030 FALSE FALSE TRUE 89771.18472 56062.09237 20881.92473 355679.5611 43647.1987 117433.3772 193168.2491 144748.5573 63130.72138 300609.4777 0.298630587 0.18649476 0.069465291 1.183194767 0.145195684 0.390650947 0.642588685 0.481516945 0.210009085 1 18.19753097 -14 0.248652369 4.4602579 0.358012664 0.246742952 0.309073133 272.1455458 2.703722979 479.7807266 0.456816224 1.00E-14 14 -4.102245236 QPLFVPTTSGPS(ph)TPPGLVLPHTEFQPAPK ddPTM_HeLa_A485_30min_R1 1 QPLFVPTTSGPSTPPGLVLPHTEFQPAPK 29 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 QPLFVPT(0.116)T(0.116)S(0.116)GPS(0.359)T(0.292)PPGLVLPHT(0.001)EFQPAPK 48.634 0.027665 62100000 30546 34091 29202 31843 40322 38474 43393 52490 29005 38439 TRUE FALSE FALSE 37340.85232 38077.6459 40005.035 33582.50246 36307.4001 40488.43915 34121.73106 39616.7452 34826.03745 28856.86472 1.294002404 1.319535101 1.386326456 1.163761302 1.258189358 1.403078247 1.182447622 1.372870739 1.206854514 1 14.81662694 -8.050678078 7.307834944 1.000004388 1.294949329 0.58480624 0.076120538 0.419578403 59.69433819 0.070951641 0.018364679 8.90E-09 8.050678078 0.294944941 QPLLGPGLGPGLGAS(ph)WR ddPTM_HeLa_A485_30min_R1 2 QPLLGPGLGPGLGASWR 17 0 Q05BS2;Q96SL1-2;Q96SL1 Q05BS2 DIRC2 Disrupted in renal carcinoma protein 2 1 0 QPLLGPGLGPGLGAS(1)WR;QPLLGPGLGPGLGAS(1)WR ; 161.51 8.19E-12 254850000 88643 83466 72053 94556 82565 84217 107168 94354 67427 147985 TRUE FALSE FALSE 108361.3295 93226.62264 98708.40308 99721.35485 74344.5387 88626.4719 84270.68132 71213.53356 80958.98042 111095.063 0.975392845 0.839160807 0.888503957 0.89762184 0.669197503 0.797753469 0.758545691 0.641014386 0.728736078 1 16.76143518 -5.74071569 24.74447846 0.749152754 0.894978876 0.307381753 0.096700141 236.0057317 281793.7959 0.027044308 0.034873049 1.82E-06 5.74071569 0.145826123 QPLLGPGLGPGLGAS(ph)WR ddPTM_HeLa_A486_30min_R1 2 QPLLGPGLGPGLGASWR 17 0 Q05BS2;Q96SL1-2;Q96SL1 Q05BS2 DIRC2 Disrupted in renal carcinoma protein 2 1 0 QPLLGPGLGPGLGAS(1)WR;QPLLGPGLGPGLGAS(1)WR ; 122.49 3.50E-06 172100000 122102 144182 113916 56493 125428 141241 140874 135669 154409 167059 TRUE FALSE FALSE 113543.2803 132756.4932 158027.326 131518.559 109695.6507 123816.1215 105625.8352 104780.1303 167793.2964 125226.339 0.906704462 1.060132351 1.261933609 1.050246777 0.875979059 0.98873865 0.843479383 0.836725973 1.339920162 1 16.93417851 -5.53740495 23.85496747 0.965895387 1.088218662 0.067426358 0.156603947 307.295385 504637.0893 0.046326968 0.059838661 2.90E-06 5.53740495 0.122323275 QPLLLS(ph)EDEEDTKR ddPTM_HeLa_A485_30min_R1 13 QPLLLSEDEEDTKR 14 1 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.997)EDEEDT(0.003)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR ;;;;;;;;;;;; 243.87 1.13E-35 2.44E+11 20830560 19673460 15397420 27629830 25596800 21741050 33844350 33200630 19104700 36932190 TRUE FALSE FALSE 25464246.21 21974100.01 21093566.4 29139177.65 23048292.72 22879377.76 26613228.14 25058123.44 22938838.05 27725674.72 0.918435582 0.792554202 0.760795422 1.050981732 0.831297811 0.825205446 0.959876663 0.903787687 0.827350039 1 24.72471923 -14 0.177492963 1.490314537 0.848611624 0.1646996 0.082542712 249.8122963 2.392754219 43.40857264 0.270920167 1.00E-14 14 -0.641702912 QPLLLS(ph)EDEEDTKR ddPTM_HeLa_A486_30min_R1 12 QPLLLSEDEEDTKR 14 1 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QPLLLS(0.999)EDEEDT(0.001)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.942)EDEEDT(0.058)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR ;;;;;;;;;;; 258.89 6.86E-42 1.99E+11 28165132 27040543 16640896 14328988 27063644 29526173 38530840 36981350 21579254 42867680 TRUE FALSE FALSE 26190901.69 24897751.89 23084696.59 33358608.21 23669069.41 25883533.98 28890016.29 28561503.9 23449761.11 32133333.91 0.81506954 0.77482629 0.718403408 1.038130942 0.736589284 0.805504155 0.899066881 0.888843467 0.729764337 1 24.93756734 -11.41490745 2.301382782 2.56947409 0.825881158 0.245986627 0.092882743 7110635.455 663267.3867 58533323.11 0.024008446 3.85E-12 11.41490745 -1.743592933 QPLSEASNQQPLS(ph)GGEEK ddPTM_HeLa_A485_30min_R1 1 QPLSEASNQQPLSGGEEK 18 0 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 QPLSEASNQQPLS(1)GGEEK 140.8 5.37E-07 117270000 60758 63259 44703 90091 85130 58665 106790 97909 61965 123650 TRUE FALSE FALSE 74273.40749 70656.58977 61240.49995 95012.44321 76654.15829 61736.60869 83973.44411 73896.66423 74400.80712 92826.33061 0.800132969 0.761169695 0.659731991 1.023550566 0.825780334 0.665076474 0.904629576 0.796074387 0.80150542 1 16.50224647 -13.99999999 0.289952463 2.519336911 0.793191049 0.256028863 0.100345407 362.540357 3.42397312 333.1332324 0.109617888 1.00E-14 13.99999999 -1.726145862 QPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_HeLa_A485_30min_R1 3 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QPPGTQQS(0.03)HS(0.423)S(0.546)PGEITSSPQGLDNPALLR;QPPGTQQS(0.02)HS(0.145)S(0.835)PGEITSSPQGLDNPALLR;QPPGTQQS(0.028)HS(0.197)S(0.775)PGEITSSPQGLDNPALLR ;; 252.14 9.39E-52 3121950000 267120 257632 274416 282763 415401 287755 330496 367920 280492 399984 TRUE FALSE FALSE 326539.9224 287759.8213 375933.8978 298209.6267 374042.2179 302821.4068 259882.8297 277687.0431 336784.1716 300275.35 1.087468294 0.958319827 1.251963899 0.99312057 1.245664081 1.008479074 0.865481731 0.924774688 1.121584478 1 18.19592652 -6.508475739 24.75403067 0.966732721 1.103357879 0.252536292 0.106241989 789.5564838 1356992.555 0.037249553 0.031621914 3.10E-07 6.508475739 0.136625158 QPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_HeLa_A486_30min_R1 3 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QPPGT(0.001)QQS(0.058)HS(0.331)S(0.61)PGEITSSPQGLDNPALLR;QPPGTQQS(0.005)HS(0.219)S(0.776)PGEITSSPQGLDNPALLR;QPPGTQQS(0.011)HS(0.212)S(0.777)PGEITSSPQGLDNPALLR ;; 224.31 1.01E-38 3169340000 248876 295177 253604 54437 294692 288982 294441 286738 263215 228940 TRUE FALSE FALSE 231431.0776 271786.0995 351806.2606 126732.0871 257728.9815 253330.339 220768.7475 221454.0168 286030.6881 171611.9339 1.348572167 1.583724939 2.050010466 0.738480619 1.501812698 1.476181366 1.286441698 1.290434831 1.66672959 1 17.38879036 -12.62617593 0.212543382 5.73E-31 1.498026578 0.134540251 0.317994669 165.5593532 2.793289835 74.41978871 0.688804737 2.36E-13 12.62617593 1.498026578 QPPTAAGRPVDAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 QPPTAAGRPVDASPR 15 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 QPPTAAGRPVDAS(1)PR;QPPTAAGRPVDAS(1)PR;QPPTAAGRPVDAS(1)PR;QPPTAAGRPVDAS(1)PR ;;; 93.371 0.00048566 3919070000 2100870 2546330 2568620 1896340 2968190 2324780 2445450 2487890 2125480 2529800 TRUE FALSE FALSE 2568201.284 2844101.143 3518859.427 1999932.252 2672666.582 2446501.886 1922959.63 1877731.077 2552044.34 1899167.418 1.352277456 1.497551568 1.852843196 1.053057373 1.407283295 1.288197061 1.012527707 0.988712769 1.343770073 1 20.85693566 -5.913717863 0.973057613 1.095293278 1.530132253 0.401546463 0.202813691 0.555758189 1.140497807 0.102322034 0.134803775 1.22E-06 5.913717863 0.434838975 QPPTAAGRPVDAS(ph)PR ddPTM_HeLa_A486_30min_R1 3 QPPTAAGRPVDASPR 15 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 QPPTAAGRPVDAS(1)PR;QPPTAAGRPVDAS(1)PR;QPPT(0.003)AAGRPVDAS(0.997)PR ;; 62.648 0.011002 2523590000 1381610 1425330 1173520 393087 1482430 1275710 1300830 1393880 1086310 1347450 TRUE FALSE FALSE 1284766.274 1312381.66 1627938.372 915126.4015 1296489.806 1118325.871 975348.5752 1076523.952 1180472.225 1010039.75 1.271995755 1.299336645 1.611756738 0.906030086 1.283602756 1.107209762 0.965653654 1.065823353 1.168738385 1 19.94598064 -5.267559287 24.9999636 1.079727649 1.384860406 0.560543233 0.130962416 370.0357033 1511605.519 0.036420958 0.05561452 5.40E-06 5.267559287 0.305132757 QPPVS(ph)PLTLSPGPEAHQGFSR ddPTM_HeLa_A485_30min_R1 1 QPPVSPLTLSPGPEAHQGFSR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QPPVS(0.998)PLT(0.001)LSPGPEAHQGFSR 55.662 0.020541 122960000 30299 32384 30123 33221 49414 27007 42182 43753 31257 46615 TRUE FALSE FALSE 37038.90802 36171.0271 41266.75122 35035.77911 44494.16866 28421.04476 33169.4711 33022.50815 37529.99319 34994.73839 1.058413628 1.033613302 1.17922731 1.001172768 1.271453102 0.812151943 0.947841665 0.943642092 1.072446743 1 15.0948504 -6.268381347 24.99999411 0.951233202 1.102536318 0.400398823 0.093738907 582.5626501 2097967.532 0.031724246 0.028560749 5.39E-07 6.268381347 0.151303116 QPPVS(ph)PLTLSPGPEAHQGFSR ddPTM_HeLa_A486_30min_R1 1 QPPVSPLTLSPGPEAHQGFSR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QPPVS(0.984)PLT(0.014)LS(0.002)PGPEAHQGFSR 51.473 0.026094 129310000 49570 69525 72267 27589 65272 48462 49498 59653 56637 41761 TRUE FALSE FALSE 46095.39898 64015.58579 100250.7178 64228.58627 57084.97712 42483.25117 37113.07686 46071.31412 61546.34076 31303.77378 1.472518914 2.044979824 3.202512211 2.051784131 1.82358132 1.357128743 1.185578363 1.471749523 1.966099717 1 14.93404897 -5.933918276 2.576933324 1.417700271 2.260904059 0.397813707 0.461006325 0.300198865 4.047085089 0.164949035 0.18734727 1.16E-06 5.933918276 0.843203788 QPPVSPLTLS(ph)PGPEAHQGFSR ddPTM_HeLa_A486_30min_R1 3 QPPVSPLTLSPGPEAHQGFSR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QPPVSPLT(0.159)LS(0.841)PGPEAHQGFSR;QPPVSPLT(0.035)LS(0.965)PGPEAHQGFSR;QPPVSPLT(0.001)LS(0.999)PGPEAHQGFSR ;; 192.01 9.81E-20 663120000 130935 154645 117656 57300.8 185836 134478 127450 147120 127643 142706 TRUE FALSE FALSE 121757.1326 142390.367 163215.5541 133399.1582 162526.716 117887.4716 95560.66197 113623.9876 138707.198 106971.4887 1.138220418 1.33110578 1.525785572 1.247053395 1.519346117 1.102045723 0.893328335 1.062189458 1.296674466 1 16.7068668 -6.393810048 6.714815047 1.058916994 1.354081769 0.494763235 0.142511093 0.213356014 10.72598494 0.050906114 0.044734123 4.04E-07 6.393810048 0.295164774 QPPVYCT(ph)SPDFK ddPTM_HeLa_A485_30min_R1 1 QPPVYCTSPDFK 12 0 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 QPPVYCT(0.776)S(0.224)PDFK 116.51 0.00085807 0 81724 81682 78822 103130 119300 103780 125180 135940 81701 154610 TRUE FALSE FALSE 99903.22186 91233.99936 107981.5379 108763.7308 107422.0731 109213.7603 98434.27037 102600.5019 98097.64129 116068.5724 0.860725861 0.786035337 0.930325373 0.937064431 0.92550525 0.940941704 0.848069967 0.883964537 0.845169707 1 16.82461786 QPPYQLRPSLFVLS(ph)PIKEPAK ddPTM_HeLa_A485_30min_R1 2 QPPYQLRPSLFVLSPIKEPAK 21 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 QPPYQLRPS(0.049)LFVLS(0.951)PIKEPAK;QPPYQLRPSLFVLS(1)PIKEPAK ; 151.31 5.25E-10 1482031000 1068330 620622 460174 1999588 1132074 867534 1427384 926494 824639 2691613 TRUE FALSE FALSE 1305976.323 693198.3442 630411.512 2108820.429 1019360.738 912956.7388 1122411.748 699269.8938 990136.4833 2020643.415 0.646317066 0.343058226 0.311985533 1.043638088 0.504473343 0.451814869 0.55547245 0.346062986 0.490010497 1 20.94638332 -10.37297145 3.320761978 1.003945368 0.518676608 0.338836752 0.200520081 84496729.5 120795717.3 3267202.746 0.052783581 4.24E-11 10.37297145 -0.48526876 QPPYQLRPSLFVLS(ph)PIKEPAK ddPTM_HeLa_A486_30min_R1 2 QPPYQLRPSLFVLSPIKEPAK 21 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 QPPYQLRPS(0.003)LFVLS(0.997)PIKEPAK;QPPYQLRPSLFVLS(1)PIKEPAK ; 174.4 2.06E-14 3004300000 2494570 2404860 966550 1562350 1932400 3163080 4030980 3499520 1953550 3810610 TRUE FALSE FALSE 2319713.525 2214290.135 1340824.045 3637229.757 1690020.373 2772851.349 3022386.169 2702755.69 2122885.287 2856408.453 0.812108479 0.775200806 0.469409073 1.273357721 0.591659212 0.970747495 1.058107136 0.946207706 0.743200884 1 21.44577086 -5.242213862 24.99972628 0.929856788 0.694535637 0.272489423 0.19013965 1185.588091 1541666.65 0.049929778 0.086311274 5.73E-06 5.242213862 -0.235321151 QPPYQLRPSLFVLS(ph)PIKEPAKVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 QPPYQLRPSLFVLSPIKEPAKVSPR 25 3 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 QPPYQLRPS(0.142)LFVLS(0.857)PIKEPAKVS(1)PR 66.01 0.0080085 469880000 93125 62166 27334 137840 75564 101000 164650 183690 67160 177620 TRUE FALSE FALSE 113840.335 69435.77293 37445.98406 145369.8502 68040.58284 106288.2038 129471.1824 138639.7395 80638.39597 133342.6029 0.853743159 0.520732095 0.280825357 1.090198084 0.510268897 0.797106113 0.970966365 1.039725763 0.604745927 1 17.02477827 -6.17108397 1.039006346 0.907403217 0.608868754 0.185712541 0.23399449 0.84792506 1.938055855 0.124902813 0.123649815 6.74E-07 6.17108397 -0.298534463 QPS(ph)ATRLPK ddPTM_HeLa_A485_30min_R1 4 QPSATRLPK 9 1 Q6P582;H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 Q6P582;H7BZ50 MZT2A;MZT2B Mitotic-spindle organizing protein 2A;Mitotic-spindle organizing protein 2B 1 0 QPS(0.991)AT(0.009)RLPK;QPS(0.999)AT(0.001)RLPK;QPS(0.982)AT(0.018)RLPK;QPS(0.876)AT(0.124)RLPK ;;; 104.24 0.00060006 9430000000 3264280 5143180 3371960 2840820 5080330 5858610 7486890 9776500 3505260 3767270 TRUE FALSE FALSE 3990407.824 5744630.161 4619388.323 2996006.803 4574514.507 6165357.76 5887254.789 7378798.046 4208733.53 2828158.92 1.410956009 2.031226081 1.633355286 1.059348816 1.617488492 2.179989857 2.081656284 2.609046469 1.488153123 1 21.43143176 -6.147811041 6.441125785 1.983973415 1.549080216 0.084427711 0.463951566 0.449828808 22.56181641 0.15052936 0.150762159 7.12E-07 6.147811041 -0.434893199 QPS(ph)ATRLPK ddPTM_HeLa_A486_30min_R1 4 QPSATRLPK 9 1 Q6P582;H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 Q6P582;H7BZ50 MZT2A;MZT2B Mitotic-spindle organizing protein 2A;Mitotic-spindle organizing protein 2B 1 0 QPS(0.982)AT(0.018)RLPK;QPS(0.982)AT(0.018)RLPK;QPS(0.99)AT(0.01)RLPK;QPS(0.989)AT(0.011)RLPK ;;; 101.89 0.000787 8142200000 3644050 2963830 2249890 1243840 3959470 2839350 4100450 3887410 2123850 4272760 TRUE FALSE FALSE 3388620.913 2728965.317 3121107.662 2895722.38 3462836.352 2489059.865 3074474.04 3002331.605 2307947.028 3202833.085 1.05800734 0.852047311 0.974483396 0.904112797 1.08117915 0.777143173 0.95992328 0.937398711 0.720595475 1 21.61091718 -6.267698767 24.9972642 0.880156503 0.963340749 0.181703379 0.099468257 1014.297981 4050651.159 0.033158375 0.029953323 5.40E-07 6.267698767 0.083184246 QPS(ph)DS(ph)SVDKFVLR ddPTM_HeLa_A485_30min_R1 2 QPSDSSVDKFVLR 13 1 P42858;A0A3B3ITM9 P42858 HTT Huntingtin 2 0 QPS(1)DS(0.566)S(0.434)VDKFVLR;QPS(1)DS(0.554)S(0.446)VDKFVLR ; 108.18 0.00040152 329490000 581020 572920 390560 843600 604640 580310 850620 819630 466470 1024580 TRUE FALSE FALSE 710265.8945 639918.0103 535044.3966 889683.7319 544439.9186 610694.1343 668878.0881 618614.4574 560086.2503 769171.062 0.923417338 0.831957989 0.695611708 1.156678632 0.707826835 0.793964002 0.869609013 0.804261221 0.728168645 1 19.55294496 QPS(ph)DS(ph)SVDKFVLR ddPTM_HeLa_A486_30min_R1 4 QPSDSSVDKFVLR 13 1 P42858;A0A3B3ITM9 P42858 HTT Huntingtin 2 0 QPS(1)DS(0.673)S(0.327)VDKFVLR;QPS(1)DS(0.623)S(0.377)VDKFVLR;QPS(1)DS(0.561)S(0.439)VDKFVLR;QPS(1)DS(0.539)S(0.461)VDKFVLR ;;; 109.04 0.0003804 847700000 1953650 1830040 939890 870400 1427960 1901500 2407390 2060250 1406520 2815080 TRUE FALSE FALSE 1816709.224 1685020.966 1303840.579 2026335.188 1248851.942 1666912.263 1805035.559 1591176.05 1528438.286 2110165.645 0.860932045 0.798525447 0.617885417 0.960273044 0.591826497 0.789943798 0.855399937 0.754052675 0.724321472 1 21.00892482 -10.77924491 2.659152792 1.059122469 0.771393759 0.297000483 0.104954985 60020935.84 44106154.03 23065954.3 0.024876324 1.66E-11 10.77924491 -0.28772871 QPS(ph)DSS(ph)VDKFVLR ddPTM_HeLa_A485_30min_R1 2 QPSDSSVDKFVLR 13 1 P42858;A0A3B3ITM9 P42858 HTT Huntingtin 2 0 QPS(1)DS(0.262)S(0.738)VDKFVLR;QPS(1)DS(0.167)S(0.833)VDKFVLR ; 121.27 7.93E-05 725190000 1839070 1824160 1186390 2517900 1842030 1811700 2723800 2475500 1355310 3147100 TRUE FALSE FALSE 2248164.777 2037479.644 1625285.031 2655446.501 1658631.025 1906557.811 2141837.879 1868379.744 1627308.285 2362585.888 0.951569544 0.862393894 0.687926326 1.123957658 0.70204052 0.80697926 0.906565086 0.790819819 0.688782699 1 21.17193535 QPS(ph)DSS(ph)VDKFVLR ddPTM_HeLa_A486_30min_R1 1 QPSDSSVDKFVLR 13 1 P42858;A0A3B3ITM9 P42858 HTT Huntingtin 2 0 QPS(1)DS(0.24)S(0.761)VDKFVLR 86.367 0.0021136 81858000 278310 249390 118210 122270 201870 253540 308550 295610 188480 377920 TRUE FALSE FALSE 258801.9062 229627.4281 163984.0778 284650.7392 176549.5822 222260.8126 231347.5265 228306.0561 204817.5982 283286.3722 0.913569912 0.810584097 0.578863277 1.004816211 0.623219468 0.784579967 0.816656039 0.805919658 0.723005475 1 18.11190168 -10.82080263 3.165747637 1.058880691 0.782596501 0.230277648 0.118104298 118195906.2 110031428.2 53157982.5 0.02877319 1.51E-11 10.82080263 -0.27628419 QPS(ph)DSSVDKFVLR ddPTM_HeLa_A485_30min_R1 3 QPSDSSVDKFVLR 13 1 P42858;A0A3B3ITM9 P42858 HTT Huntingtin 1 0 QPS(0.861)DS(0.103)S(0.036)VDKFVLR;QPS(0.974)DS(0.02)S(0.006)VDKFVLR;QPS(0.93)DS(0.052)S(0.019)VDKFVLR ;; 89.669 0.00080111 734670000 416830 497910 378180 489300 572290 517940 636740 712070 476480 677600 TRUE FALSE FALSE 509552.3955 556136.2433 518084.5194 516029.22 515310.7982 545058.5375 500695.2973 537433.716 572105.1655 508686.7903 1.001701647 1.093278327 1.01847449 1.014434088 1.013021781 1.071501261 0.984289954 1.056512035 1.124670773 1 18.9564181 -7.51329188 24.97724243 1.071754055 1.030057734 0.104395712 0.041509618 830.3326213 2163341.742 0.023774891 0.010112976 3.07E-08 7.51329188 -0.041696321 QPS(ph)DSSVDKFVLR ddPTM_HeLa_A486_30min_R1 4 QPSDSSVDKFVLR 13 1 P42858;A0A3B3ITM9 P42858 HTT Huntingtin 1 0 QPS(0.903)DS(0.049)S(0.049)VDKFVLR;QPS(0.945)DS(0.027)S(0.027)VDKFVLR;QPS(0.994)DS(0.004)S(0.002)VDKFVLR;QPS(0.951)DS(0.034)S(0.015)VDKFVLR ;;; 123.19 1.68E-05 948770000 889480 812380 482700 276536 804740 839210 975450 929830 697880 1100630 TRUE FALSE FALSE 827132.0453 748004.0502 669614.3672 643789.7834 703802.0053 735676.8027 731382.0927 718128.007 758372.8003 825025.0841 1.002553815 0.906644009 0.811629101 0.780327527 0.853067402 0.891702346 0.886496795 0.870431725 0.919211809 1 19.65407846 -8.174864992 1.471039604 1.00023602 0.869880254 0.312522516 0.05610189 0.882582654 3.758163476 0.058204887 0.017095202 6.69E-09 8.174864992 -0.130355765 QPS(ph)EEEIIK ddPTM_HeLa_A485_30min_R1 6 QPSEEEIIK 9 0 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK ;;;;; 130.1 0.00024515 9297740000 2611830 2177970 1731590 2993410 3181170 2484360 3850500 3782970 2834020 4572080 TRUE FALSE FALSE 3192822.573 2432664.646 2372177.198 3156932.409 2864441.545 2614437.248 3027809.219 2855190.676 3402781.819 3432344.599 0.930216207 0.708747206 0.691124428 0.91975975 0.834543695 0.761705934 0.88214022 0.831848491 0.991387001 1 21.71076297 -7.74759196 3.142031163 1.007031427 0.813426603 0.454810214 0.076775326 0.222020345 4.166824023 0.070921212 0.020393199 1.79E-08 7.74759196 -0.193604825 QPS(ph)EEEIIK ddPTM_HeLa_A486_30min_R1 7 QPSEEEIIK 9 0 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK ;;;;;; 136.93 0.00017129 11872320000 4252830 4015700 2215680 1689062 3870280 4934080 5841310 6239450 3594630 5869670 TRUE FALSE FALSE 3954728.579 3697481.307 3073650.634 3932221.696 3384833.393 4325363.376 4379752.455 4818863.441 3906215.423 4399866.427 0.898829236 0.840362172 0.698578169 0.89371388 0.769303671 0.983066974 0.995428504 1.095229485 0.887803184 1 22.0690283 -6.317208052 6.671472524 0.999530906 0.818733869 0.590315856 0.071599172 0.16528385 16.22387358 0.024720232 0.021859581 4.82E-07 6.317208052 -0.180797036 QPS(ph)EGSSSREEEGPSTSCILESLFR ddPTM_HeLa_A485_30min_R1 1 QPSEGSSSREEEGPSTSCILESLFR 25 1 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QPS(0.924)EGS(0.025)S(0.025)S(0.025)REEEGPSTSCILESLFR 51.296 0.018564 34611000 3152.7 1676.2 4591.9 6571.4 12767 4112.2 6229.2 6186 5274.7 9412.6 TRUE FALSE FALSE 3854.007238 1872.217009 6290.634895 6930.378942 11495.87265 4327.508433 4898.280532 4668.873801 6333.283908 7066.212046 0.545413471 0.264953414 0.890241455 0.980777098 1.626879094 0.612422668 0.693197501 0.660732196 0.896277081 1 12.78672133 -4.77412372 23.11537149 0.916271323 0.405183606 0.356951802 0.276392362 92.47294473 168521.1373 0.07766869 0.163798494 1.68E-05 4.77412372 -0.511087717 QPS(ph)EGSSSREEEGPSTSCILESLFR ddPTM_HeLa_A486_30min_R1 1 QPSEGSSSREEEGPSTSCILESLFR 25 1 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QPS(0.497)EGS(0.153)S(0.153)S(0.177)REEEGPS(0.007)T(0.007)S(0.007)CILESLFR 41.83 0.033639 35663000 0 2520.8 4003.3 1684.1 4873.4 2577.6 3099.1 5236.4 2743.9 2860.2 TRUE FALSE FALSE 0 2321.042627 5553.484972 3920.66991 4262.132729 2259.601919 2323.672401 4044.18603 2981.743461 2143.987303 0 1.082582263 2.590260196 1.828681496 1.987946814 1.053925047 1.083808844 1.886291968 1.390746791 1 11.06608065 -8.028076588 22.38408083 0.999999953 1.48264787 0.033823517 0.668279353 3073.099254 2450033.351 0.67526328 0.174352229 9.37E-09 8.028076588 0.482647917 QPS(ph)GAGLCDISEGTVVPEDR ddPTM_HeLa_A485_30min_R1 2 QPSGAGLCDISEGTVVPEDR 20 0 Q5T5C0-2;Q5T5C0;H0Y332;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 QPS(1)GAGLCDISEGTVVPEDR;QPS(1)GAGLCDISEGTVVPEDR ; 228.23 1.03E-35 205515000 47423 64610 66243 48236 75611 63111 78508 71614 50035 78983 TRUE FALSE FALSE 57972.08274 72165.57747 90749.0423 50871.01054 68082.90335 66415.39437 61734.12445 54050.55421 60076.56555 59293.99167 0.977705854 1.217080777 1.530493052 0.857945453 1.148226008 1.120103277 1.04115312 0.911568823 1.013198199 1 15.8555983 -6.297358851 0.805657311 0.972897745 1.194517535 0.171435887 0.164974916 1.093501637 1.535112476 0.115191702 0.105984581 5.04E-07 6.297358851 0.22161979 QPS(ph)GAGLCDISEGTVVPEDR ddPTM_HeLa_A486_30min_R1 2 QPSGAGLCDISEGTVVPEDR 20 0 Q5T5C0-2;Q5T5C0;H0Y332;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 QPS(1)GAGLCDISEGTVVPEDR;QPS(0.998)GAGLCDIS(0.002)EGTVVPEDR ; 218.79 2.74E-35 96148000 66443 83137 68513.5 25873.7 96042 76679 90656 94281 76493 83370 TRUE FALSE FALSE 61785.68881 76548.92134 95043.76206 60235.28118 83995.5168 67219.12459 67972.90994 72815.27444 83123.47483 62493.60935 0.988672113 1.224907989 1.520855701 0.963863054 1.3440657 1.075615976 1.087677774 1.165163529 1.330111602 1 15.93142105 -6.314531418 24.99971746 1.139284291 1.213152066 0.047458251 0.169616103 1296.148367 610319.7266 0.059256126 0.052259096 4.85E-07 6.314531418 0.073867775 QPS(ph)MSETMPLYTLCK ddPTM_HeLa_A486_30min_R1 1 QPSMSETMPLYTLCK 15 0 K7EJD2;A0A0A0MR03;Q9Y5B0 K7EJD2 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 QPS(0.999)MS(0.001)ETMPLYTLCK 136.01 9.17E-06 36105000 23376 23464 14232 10230 22394 30017 34080 32145 17682 31522 TRUE FALSE FALSE 21737.46311 21604.62719 19743.01155 23815.957 19585.1357 26313.80773 25552.82354 24826.28522 19214.69 23628.68603 0.919960724 0.914338917 0.835552664 1.007925577 0.828871131 1.113638215 1.081432269 1.050684122 0.813193335 1 14.52825178 -6.255682658 24.99811111 1.019310013 0.904320236 0.278697351 0.088373584 645.0504881 2801084.057 0.029618481 0.028889729 5.55E-07 6.255682658 -0.114989777 QPS(ph)PGPTPPPFPGNR ddPTM_HeLa_A485_30min_R1 1 QPSPGPTPPPFPGNR 15 0 O43516-2;O43516;O43516-3;E9PB87 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 QPS(0.999)PGPT(0.001)PPPFPGNR 130.29 1.88E-05 289250000 187140 238610 214790 192200 304440 185780 309710 244660 206970 355890 TRUE FALSE FALSE 228768.6474 266513.3639 294249.7592 202699.3993 274128.8846 195507.1535 243537.9284 184656.7514 248506.9806 267173.1727 0.856256057 0.997530408 1.101344705 0.758681709 1.02603447 0.731761919 0.911535863 0.691150049 0.930134482 1 18.02741563 -5.266554623 24.94126248 0.854515744 0.98629239 0.175749081 0.118645538 626.8508157 3056445.098 0.03155668 0.048476534 5.41E-06 5.266554623 0.131776646 QPS(ph)PGPTPPPFPGNR ddPTM_HeLa_A486_30min_R1 2 QPSPGPTPPPFPGNR 15 0 O43516-2;O43516;O43516-3;E9PB87 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 QPS(1)PGPTPPPFPGNR;QPS(0.994)PGPT(0.006)PPPFPGNR ; 139.71 9.14E-06 321280000 314653 319510 296380 156111 413770 319920 434070 395560 300230 343710 TRUE FALSE FALSE 292597.4496 294190.864 411146.2733 363434.2974 361871.1083 280451.5231 325461.0949 305499.623 326254.1781 257642.7788 1.135671067 1.141855655 1.595799716 1.410613172 1.404545899 1.08852856 1.263226147 1.185748828 1.266304375 1 17.97501263 -6.254906709 24.98142545 1.178774918 1.34520695 0.26591732 0.145189461 838.8213767 3207717.272 0.051289945 0.050120394 5.56E-07 6.254906709 0.166432032 QPS(ph)PSPS(ph)PTER ddPTM_HeLa_A485_30min_R1 1 QPSPSPSPTER 11 0 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 2 0 QPS(0.996)PS(0.118)PS(0.877)PT(0.009)ER 150.22 1.35E-06 377520000 192430 207590 247770 259420 204720 185910 214200 134570 197040 328130 TRUE FALSE FALSE 235235.3896 231865.8447 339430.4336 273591.4577 184337.358 195643.9601 168434.4201 101566.4965 236584.1206 246333.2298 0.954947856 0.941269048 1.377931974 1.110655911 0.748325178 0.7942248 0.68376654 0.41231342 0.960423086 1 17.91025173 -5.767894521 7.806180343 0.733750779 1.105826562 0.416658346 0.188626117 0.116139671 48.25782992 0.058229142 0.069555901 1.71E-06 5.767894521 0.372075783 QPS(ph)PSPS(ph)PTER ddPTM_HeLa_A486_30min_R1 1 QPSPSPSPTER 11 0 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 2 0 QPS(0.692)PS(0.308)PS(1)PTER 146.77 1.77E-06 592030000 273300 377850 271040 88076 300330 285870 298460 273840 313820 313830 TRUE FALSE FALSE 254143.0813 347907.7899 375993.9467 205045.3791 262659.8109 250602.2659 223782.1512 211492.6099 341022.1703 235244.9253 1.080333958 1.4789173 1.598308428 0.87162509 1.116537628 1.065282346 0.951273023 0.89903155 1.449647298 1 17.84380408 -5.264354204 24.99600725 1.045513141 1.395159635 0.383617628 0.194629477 249.3114992 2137968.867 0.05335653 0.08318299 5.44E-06 5.264354204 0.349646494 QPS(ph)PSPSPTER ddPTM_HeLa_A485_30min_R1 1 QPSPSPSPTER 11 0 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 QPS(0.493)PS(0.493)PS(0.015)PTER 127.79 5.25E-05 522630000 224510 252200 272420 219080 260190 242500 214120 221810 230350 270940 TRUE FALSE FALSE 274451.4749 281692.5962 373199.4943 231047.7857 234284.57 255196.925 168371.5128 167410.7497 276579.1321 203399.6443 1.349321312 1.384921774 1.834808982 1.135930136 1.151843558 1.254657676 0.827786663 0.823063139 1.359781789 1 17.63395763 -5.430874676 7.702979321 1.065384667 1.508733883 0.512478702 0.199153947 0.241879772 18.01445259 0.057777597 0.085751409 3.71E-06 5.430874676 0.443349216 QPS(ph)PSPSPTER ddPTM_HeLa_A486_30min_R1 1 QPSPSPSPTER 11 0 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 QPS(0.964)PS(0.036)PSPTER 157.43 2.25E-07 455560000 279770 369640 292930 103800 339760 316760 337240 313090 317490 308630 TRUE FALSE FALSE 260159.5677 340348.3802 406360.3409 241651.6458 297144.1327 277681.3718 252858.985 241806.2417 345010.2888 231347.0392 1.124542457 1.471159438 1.75649683 1.04454177 1.284408626 1.200280638 1.092985611 1.045210013 1.491310587 1 17.81969911 -5.287284186 24.88139451 1.170795693 1.452775693 0.307744327 0.195899492 841.4175032 810050.1615 0.054606179 0.081025086 5.16E-06 5.287284186 0.28198 QPS(ph)SPGPTPR ddPTM_HeLa_A485_30min_R1 2 QPSSPGPTPR 10 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 0 QPS(0.633)S(0.366)PGPT(0.001)PR;QPS(0.552)S(0.448)PGPTPR ; 83.182 0.0056238 2483900000 1600420 2542700 2283000 1523880 2482700 2449700 2563900 3054500 2043400 2463600 TRUE FALSE FALSE 1956427.908 2840046.646 3127576.704 1607125.706 2235513.671 2577962.504 2016101.82 2305379.086 2453491.637 1849469.859 1.057831734 1.535600395 1.691066598 0.868965611 1.208732145 1.393892683 1.090097149 1.24650806 1.326591847 1 20.81868036 -13.99999988 0.104278324 0.165035709 1.439780939 0.107571734 0.226315912 408.6507073 2.86663849 74.33696854 3.471563997 1.00E-14 13.99999988 1.27474523 QPS(ph)SPSHNTNLR ddPTM_HeLa_A486_30min_R1 2 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 QPS(0.5)S(0.5)PSHNTNLR;QPS(0.495)S(0.495)PS(0.009)HNTNLR ; 104.94 0.00042435 771950000 243160 248876 300669 21957.8 300926 203766 196438 215623 266842 130361 TRUE FALSE FALSE 226115.7397 229154.1594 417096.089 51118.86809 263181.0551 178627.4227 147287.1347 166530.3499 289972.0794 97717.75709 2.313967762 2.345061596 4.268375589 0.523127726 2.69327769 1.827993478 1.507270931 1.704197424 2.967445099 1 16.57633313 -5.263655142 24.99997542 1.808444902 2.912727576 0.307805061 0.839781554 259.2585657 2925168.67 0.226444451 0.355271564 5.45E-06 5.263655142 1.104282674 QPS(ph)SPYEDKDK ddPTM_HeLa_A485_30min_R1 2 QPSSPYEDKDK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.5)S(0.5)PYEDKDK;QPS(0.563)S(0.436)PY(0.001)EDKDK ; 111.31 0.0038559 130510000 363640 207700 156704 744240 258550 240910 406370 272540 246970 855430 TRUE FALSE FALSE 444530.4635 231988.7083 214675.3306 784895.9467 232807.8542 253523.6751 319545.7298 205699.1377 296534.6137 642187.044 0.692213379 0.36124788 0.334287857 1.222223267 0.362523437 0.394781672 0.497589811 0.32031032 0.46175739 1 19.29263403 -10.57442348 4.266565536 1.007447219 0.51275792 0.239906743 0.258206931 369027770.9 197024.4902 26997591.17 0.063062037 2.66E-11 10.57442348 -0.494689299 QPSEGS(ph)SSREEEGPSTSCILESLFR ddPTM_HeLa_A486_30min_R1 1 QPSEGSSSREEEGPSTSCILESLFR 25 1 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QPS(0.025)EGS(0.325)S(0.325)S(0.325)REEEGPSTSCILESLFR 94.185 0.0012381 31731000 0 5089.5 3935.4 0 10049 6006.4 6055.5 9734.6 3262.3 6402.1 TRUE FALSE FALSE 0 4686.189484 5459.292274 0 8788.560717 5265.391437 4540.349851 7518.244085 3545.078791 4798.972489 0 0.97649851 1.137596076 0 1.831342175 1.097191419 0.946108748 1.566636213 0.738716214 1 12.22850983 -5.760297948 24.99999539 1.207495975 0.604027133 0.342168742 0.448842414 38.98781141 853907.4865 0.132466616 0.16149599 1.74E-06 5.760297948 -0.603468842 QPSLTLELFPNHTDNLNSSQRLS(ph)PSSR ddPTM_HeLa_A485_30min_R1 1 QPSLTLELFPNHTDNLNSSQRLSPSSR 27 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 QPSLTLELFPNHT(0.003)DNLNS(0.048)S(0.048)QRLS(0.893)PS(0.004)S(0.004)R 143.09 3.97E-09 199680000 34911 52666 56143 26862 68440 49763 68602 91478 51244 54062 TRUE FALSE FALSE 42676.83151 58824.83057 76912.63201 28329.40304 61625.87329 52368.51373 53944.62227 69042.87707 61528.20076 40585.33834 1.05153322 1.44941087 1.895084165 0.69802062 1.518426994 1.290330841 1.329165272 1.701177812 1.516020398 1 15.30867102 QPSLTLELFPNHTDNLNSSQRLS(ph)PSSR ddPTM_HeLa_A486_30min_R1 1 QPSLTLELFPNHTDNLNSSQRLSPSSR 27 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 QPSLTLELFPNHTDNLNS(0.008)S(0.008)QRLS(0.976)PS(0.006)S(0.001)R 205.03 1.18E-28 109310000 27983 25992 27017 6171.6 39870 26011 31002 30754 21852 28160 TRUE FALSE FALSE 26021.5362 23932.29926 37478.70594 14367.7967 34869.13283 22802.02728 23244.97169 23751.98556 23746.14895 21108.55271 1.232748477 1.133772627 1.775522295 0.680662331 1.651895955 1.080226939 1.10121106 1.125230416 1.124953912 1 14.36554004 QPSNS(ph)PPPMSSAMIQPHGAASSSQFQGLPSR ddPTM_HeLa_A485_30min_R1 1 QPSNSPPPMSSAMIQPHGAASSSQFQGLPSR 31 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2-8;Q9Y2K2 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 0 QPS(0.001)NS(0.998)PPPMSSAMIQPHGAASSSQFQGLPSR 177.41 1.34E-15 270150000 14401 44770 50687 11004 51875 33165 41486 65587 34503 26989 TRUE FALSE FALSE 17604.45277 50005.46205 69438.23056 11605.12066 46710.14286 34901.46812 32622.17719 49501.68541 41427.43562 20261.139 0.868877745 2.468047925 3.42716323 0.572777308 2.305405578 1.722581743 1.610086047 2.443183743 2.044674568 1 14.30642766 -5.259193353 24.99998158 1.757391034 2.276031328 0.096484449 0.78708841 549.8440865 6120141.268 0.215111997 0.350945279 5.51E-06 5.259193353 0.518640295 QPSNS(ph)PPPMSSAMIQPHGAASSSQFQGLPSR ddPTM_HeLa_A486_30min_R1 1 QPSNSPPPMSSAMIQPHGAASSSQFQGLPSR 31 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2-8;Q9Y2K2 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 0 QPS(0.058)NS(0.942)PPPMSSAMIQPHGAASSSQFQGLPSR 139.63 2.74E-07 222430000 43400 41338 42899 2247.4 51687 34607 41987 42708 44652 24951 TRUE FALSE FALSE 40357.88412 38062.22633 59510.64168 5232.060777 45203.9345 30337.5402 31481.40851 32984.32071 48522.47131 18703.1072 2.157817078 2.035075024 3.181858557 0.279742864 2.416921104 1.622058831 1.683218097 1.763574382 2.594353484 1 14.19099035 -5.21237366 24.99997091 1.690218867 2.415931863 0.236176776 0.679691134 625.3264392 318615.338 0.176366068 0.305474444 6.13E-06 5.21237366 0.725712996 QPSPS(ph)PSPTER ddPTM_HeLa_A485_30min_R1 1 QPSPSPSPTER 11 0 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 QPS(0.168)PS(0.83)PS(0.002)PTER 131.06 4.02E-05 684000000 93015 110580 122940 98574 137610 97368 130010 110980 116940 119830 TRUE FALSE FALSE 113705.8659 123511.3691 168420.622 103958.848 123909.0652 102466.0379 102232.3014 83761.98099 140408.7854 89958.58631 1.263980133 1.372980325 1.872201742 1.155630077 1.377401205 1.139035662 1.136437394 0.931117133 1.560815828 1 16.45697337 -5.738555128 1.793021892 1.158883715 1.475674744 0.240083252 0.231298042 0.4878922 3.238974635 0.079746428 0.107412351 1.83E-06 5.738555128 0.316791029 QPSPS(ph)PSPTER ddPTM_HeLa_A486_30min_R1 1 QPSPSPSPTER 11 0 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 QPS(0.394)PS(0.605)PS(0.001)PTER 137.81 1.48E-05 624450000 134280 157630 142830 58343 203650 158190 149820 150690 134160 125030 TRUE FALSE FALSE 124867.6654 145138.8247 198137.6011 135825.4525 178106.318 138674.1262 112333.4514 116381.1765 145789.0968 93721.67419 1.332324316 1.548615365 2.114106506 1.449242704 1.900374909 1.47963774 1.198585624 1.241774409 1.555553697 1 16.51609511 -6.53691055 5.247445453 1.274333214 1.677136322 0.396960988 0.242887188 0.190702247 15.78484516 0.091665181 0.073004335 2.90E-07 6.53691055 0.402803108 QPSS(ph)PGPTPR ddPTM_HeLa_A486_30min_R1 1 QPSSPGPTPR 10 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 0 QPS(0.244)S(0.754)PGPT(0.002)PR 66.326 0.017748 932480000 821860 911620 830910 213420 1074900 794000 806750 827790 744560 806120 TRUE FALSE FALSE 764251.8581 839379.9111 1152660.605 496852.5456 940076.019 696044.3528 604892.6171 639320.2875 809099.0603 604262.305 1.264768382 1.389098582 1.907550074 0.822246467 1.555741623 1.151891069 1.00104311 1.058017821 1.338986486 1 19.20481542 -5.863629496 1.029612142 1.107939004 1.453274964 0.194020393 0.270413054 0.866060603 1.974513056 0.125974563 0.172534957 1.37E-06 5.863629496 0.34533596 QPSS(ph)PSHNTNLR ddPTM_HeLa_A485_30min_R1 3 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 QPS(0.027)S(0.97)PS(0.003)HNTNLR;QPS(0.243)S(0.754)PS(0.003)HNTNLR;QPS(0.213)S(0.786)PS(0.001)HNTNLR ;; 153.32 8.77E-08 875330000 218605 413700 392060 144580 423770 303147 315588 383360 310971 239116 TRUE FALSE FALSE 267232.9281 462078.6163 537099.309 152478.0393 381577.9709 319019.3082 248160.0457 289340.3589 373380.0273 179508.7818 1.488689998 2.574128194 2.992050325 0.849418272 2.125678571 1.777179395 1.382439584 1.611845148 2.080009811 1 17.4536949 -5.2554878 24.99856695 1.599035628 2.373873319 0.330541721 0.520967074 585.9228848 2461059.685 0.139566961 0.233887336 5.55E-06 5.2554878 0.774837691 QPSS(ph)PSHNTNLR ddPTM_HeLa_A486_30min_R1 1 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 QPS(0.187)S(0.752)PS(0.062)HNTNLR 79.346 0.0048323 545610000 177050 155830 175970 6664.6 190330 123790 129760 132760 157580 81754 TRUE FALSE FALSE 164639.7093 143481.4633 244110.2966 15515.52561 166457.0366 108518.0484 97292.67554 102533.4461 171239.1613 61282.26627 2.686579973 2.341321103 3.983375803 0.253181329 2.716235002 1.770790394 1.587615496 1.673134046 2.794269398 1 15.90318203 -5.247285681 24.99955103 1.755560423 2.937515009 0.361075059 0.79858002 945.7376598 1670445.395 0.206964322 0.356289118 5.66E-06 5.247285681 1.181954586 QPSS(ph)PYEDKDK ddPTM_HeLa_A485_30min_R1 1 QPSSPYEDKDK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.001)S(0.999)PYEDKDK 177.88 1.25E-09 1232100000 1372700 680640 464220 3056300 784330 805070 1373000 728150 866800 3546900 TRUE FALSE FALSE 1678052.379 760234.9272 635954.2958 3223257.93 706239.3513 847222.2203 1079647.334 549570.0708 1040758.809 2662723.106 0.630201607 0.28551032 0.23883606 1.210511871 0.265231991 0.318178867 0.40546737 0.206393999 0.390862575 1 21.34447098 -10.84853004 6.786193711 1.053001232 0.434815131 0.261862054 0.282473507 0.148203766 0.003307951 0.178949634 0.066896282 1.42E-11 10.84853004 -0.618186101 QPSS(ph)PYEDKDK ddPTM_HeLa_A486_30min_R1 5 QPSSPYEDKDK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPSS(1)PYEDKDK;QPS(0.008)S(0.992)PYEDKDK;QPS(0.003)S(0.997)PYEDKDK;QPS(0.008)S(0.992)PYEDKDK;QPS(0.055)S(0.945)PYEDKDK ;;;; 202.82 4.86E-15 7705750000 5982310 6102530 1779086 3536340 3090130 7870570 8849090 7174190 4555900 12131370 TRUE FALSE FALSE 5562980.962 5618943.298 2467995.745 8232778.237 2702537.081 6899579.095 6634954.086 5540783.548 4950809.08 9093595.99 0.611747098 0.617901137 0.271399317 0.905338025 0.297191241 0.758729451 0.729629301 0.609306104 0.544428088 1 23.11641948 -14 0.233932467 3.218120545 0.551848492 0.305835036 0.183785495 199.4078311 1.994929473 209.8632004 0.293246031 1.00E-14 14 -2.666272053 QPSS(ph)PYEDKDKDK ddPTM_HeLa_A485_30min_R1 3 QPSSPYEDKDKDK 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.054)S(0.946)PYEDKDKDK;QPS(0.045)S(0.955)PYEDKDKDK;QPS(0.028)S(0.972)PYEDKDKDK ;; 199.08 9.29E-22 1104950000 1108080 409240 262496 3510600 686750 643110 1479920 832050 526770 4346000 TRUE FALSE FALSE 1354568.573 457097.0581 359604.1938 3702375.189 618374.7587 676782.2452 1163723.002 627988.4329 632487.9072 3262622.182 0.415177884 0.140101131 0.11021938 1.134785146 0.189533058 0.207435065 0.356683348 0.192479668 0.193858765 1 21.6376005 -10.61234401 2.865718206 1.052016839 0.328001679 0.334384505 0.284978604 83239673.67 84008938.37 32492133.92 0.074609813 2.44E-11 10.61234401 -0.72401516 QPSS(ph)PYEDKDKDK ddPTM_HeLa_A486_30min_R1 3 QPSSPYEDKDKDK 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.202)S(0.798)PY(0.001)EDKDKDK;QPS(0.287)S(0.713)PYEDKDKDK;QPS(0.019)S(0.981)PYEDKDKDK ;; 190.82 1.21E-17 886850000 782882 776017 234465 940600 507167 1469250 1825030 1554830 709698 2734060 TRUE FALSE FALSE 728006.0146 714522.5867 325256.1272 2189764.335 443553.3857 1287988.873 1368388.191 1200829.151 771215.1941 2049433.58 0.355223034 0.348643934 0.158705376 1.068472946 0.216427305 0.6284609 0.667690919 0.585932212 0.376306508 1 20.9667938 -14 0.094112622 2.46050217 0.144831867 0.285604358 0.248552018 272.0874956 1.761183869 80.87632249 5.034885511 1.00E-14 14 -2.315670303 QPSS(ph)PYEDKDKDKK ddPTM_HeLa_A485_30min_R1 2 QPSSPYEDKDKDKK 14 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.286)S(0.714)PYEDKDKDKK;QPS(0.108)S(0.892)PYEDKDKDKK ; 114.99 0.0010688 8541000000 1991270 658070 363810 6350500 1309080 1435250 3468000 1909200 1047020 7949600 TRUE FALSE FALSE 2434221.142 735025.5621 498398.4584 6697411.735 1178743.399 1510397.471 2727033.469 1440965.706 1257147.31 5967911.022 0.407884959 0.123162956 0.083513051 1.122237197 0.197513568 0.253086459 0.456949418 0.241452277 0.210651148 1 22.5087946 -10.9396653 2.419673594 1.467204992 0.346096114 0.326927005 0.282342632 21973916.39 10470770.32 57879069.17 0.073301168 1.15E-11 10.9396653 -1.121108879 QPSS(ph)PYEDKDKDKK ddPTM_HeLa_A486_30min_R1 2 QPSSPYEDKDKDKK 14 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.203)S(0.797)PYEDKDKDKK;QPS(0.003)S(0.997)PYEDKDKDKK ; 189.55 1.12E-17 8474400000 4410000 3477800 749710 6281100 2278790 7036000 11223500 8570300 2748100 16260200 TRUE FALSE FALSE 4100881.773 3202206.462 1040017.79 14622718.23 1992962.909 6167969.857 8415261.59 6619029.778 2986307.521 12188540.08 0.336453894 0.262722725 0.085327511 1.199710394 0.163511208 0.506046648 0.690424081 0.543053535 0.245009452 1 23.539022 -14 0.168184028 2.959227665 0.334459406 0.217728123 0.307773241 215.8723338 2.026059281 142.9259684 1.146574961 1.00E-14 14 -2.624768259 QPSS(ph)SPSSIIR ddPTM_HeLa_A486_30min_R1 1 QPSSSPSSIIR 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 QPS(0.163)S(0.406)S(0.406)PS(0.021)S(0.005)IIR 81.565 0.0038056 0 189420 198070 176780 85672 222320 211720 233300 243420 181470 206940 TRUE FALSE FALSE 176142.6362 182374.2118 245233.9503 199448.7456 194434.5525 185600.139 174925.8724 187998.5798 197199.9657 155120.877 1.135518568 1.175690953 1.580921634 1.285763396 1.253438971 1.196487169 1.127674596 1.211948923 1.271266444 1 17.24303334 -6.135905426 2.407468677 1.170465158 1.304361879 0.194668724 0.128434531 0.560283643 6.360914625 0.049288283 0.049394856 7.31E-07 6.135905426 0.133896721 QPSSS(ph)PSSIIR ddPTM_HeLa_A485_30min_R1 3 QPSSSPSSIIR 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 QPS(0.031)S(0.151)S(0.759)PS(0.049)S(0.01)IIR;QPSS(0.032)S(0.881)PS(0.077)S(0.01)IIR;QPSS(0.097)S(0.874)PS(0.026)S(0.003)IIR ;; 130.15 0.00013608 604430000 479230 541530 532760 525850 618530 581400 657350 596870 522760 722980 TRUE FALSE FALSE 585833.0602 604857.2228 729850.094 554575.854 556946.9814 611841.205 516901.8024 450486.6966 627673.137 542754.3915 1.079370466 1.11442161 1.344715226 1.021780501 1.026149194 1.127289276 0.952367794 0.830001017 1.156458882 1 19.04993997 -5.476535275 24.55711136 1.010653859 1.174703396 0.330697395 0.106242898 403.7350393 213936.1552 0.030364367 0.045035555 3.34E-06 5.476535275 0.164049537 QPSSS(ph)PSSIIR ddPTM_HeLa_A486_30min_R1 1 QPSSSPSSIIR 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 QPS(0.038)S(0.167)S(0.752)PS(0.038)S(0.005)IIR 82.85 0.0053378 299140000 242800 269870 202920 96897 256070 260150 297230 274230 214730 317630 TRUE FALSE FALSE 225780.9738 248484.5184 281496.0584 225581.1129 223951.3128 228055.338 222859.9102 211793.8154 233342.9693 238093.3806 0.948287488 1.043643119 1.182292669 0.947448066 0.940602852 0.957839892 0.936018925 0.889540965 0.980048117 1 17.86116799 -5.458660792 24.99938059 0.944708926 1.058004668 0.406945734 0.059418755 195.657844 76167.03007 0.016780947 0.024890148 3.48E-06 5.458660792 0.113295742 QPSSSPS(ph)SIIR ddPTM_HeLa_A486_30min_R1 1 QPSSSPSSIIR 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 QPSSS(0.1)PS(0.898)S(0.001)IIR 177.12 5.80E-09 284910000 310990 319860 221070 104650 288140 276550 330610 329770 250240 379100 TRUE FALSE FALSE 289191.207 294513.1287 306674.2245 243630.4887 251998.7944 242432.0728 247887.8812 254688.5698 271931.0047 284170.8925 1.017666533 1.036394425 1.079189433 0.857337944 0.886786089 0.853120707 0.872319747 0.896251434 0.956927722 1 18.11639926 -5.260983877 24.99999942 0.894862869 1.043614565 0.667256816 0.045412282 22.29390383 1223556.785 0.012321985 0.019790681 5.48E-06 5.260983877 0.148751695 QPSVETLDS(ph)PTGSHVEWCK ddPTM_HeLa_A485_30min_R1 2 QPSVETLDSPTGSHVEWCK 19 0 F8WA39;Q13613;E9PPP8;Q8NEC6;Q13613-2 F8WA39 MTMR1 Myotubularin-related protein 1 1 0 QPSVET(0.004)LDS(0.995)PTGSHVEWCK;QPSVETLDS(0.991)PT(0.008)GSHVEWCK ; 183.58 2.94E-18 530170000 321037 383770 322854 321070 480040 327820 440730 429810 317625 463100 TRUE FALSE FALSE 392450.5731 428648.5631 442291.1297 338609.2411 432245.5321 344984.1483 346564.4351 324398.4236 381369.4241 347657.6927 1.128841908 1.232961537 1.272202914 0.973973101 1.243307832 0.992309837 0.996855362 0.933097211 1.096968173 1 18.40730799 -6.042241599 1.036166931 0.994172284 1.195173283 0.414900314 0.091473951 0.486101224 1.116100316 0.045353733 0.051174494 9.07E-07 6.042241599 0.201000999 QPSVETLDS(ph)PTGSHVEWCK ddPTM_HeLa_A486_30min_R1 3 QPSVETLDSPTGSHVEWCK 19 0 F8WA39;Q13613;E9PPP8;Q8NEC6;Q13613-2 F8WA39 MTMR1 Myotubularin-related protein 1 1 0 QPSVET(0.004)LDS(0.989)PT(0.006)GSHVEWCK;QPSVETLDS(0.997)PT(0.003)GSHVEWCK;QPS(0.008)VET(0.004)LDS(0.959)PT(0.024)GS(0.005)HVEWCK ;; 188.3 1.90E-18 591080000 298609 304964 215975 103562 368810 290082 323883 335090 239666 318859 TRUE FALSE FALSE 277678.0511 280797.542 299606.304 241097.5697 322550.4108 254294.6322 242844.0477 258797.322 260440.4418 239014.631 1.16176173 1.174813194 1.253506125 1.008714691 1.349500696 1.063929146 1.016021683 1.082767699 1.089642257 1 17.86673941 -6.482612311 24.97353263 1.052000864 1.184767684 0.40953036 0.083574532 522.3171932 323945.3405 0.027794595 0.024509374 3.29E-07 6.482612311 0.13276682 QPT(ph)PPFFGR ddPTM_HeLa_A485_30min_R1 6 QPTPPFFGR 9 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR ;;;;; 137.4 0.00080472 70617280000 2586500.8 3818128.1 3451505.2 2554837.7 4042526 3436616.4 3958380 4453702 3061150.7 3386807.7 TRUE FALSE FALSE 3161858.98 4264624.968 4728360.603 2694402.014 3640037.917 3616552.321 3112639.776 3361424.601 3675495.567 2542538.87 1.24358334 1.677309644 1.859700419 1.059728937 1.431654776 1.422417711 1.22422505 1.322074027 1.445600541 1 21.2778384 -12.59330442 0.09868839 8.83E-13 1.736171023 0.26862785 0.21280431 178.6376064 1.634834928 41.53769176 4.260588611 2.55E-13 12.59330442 1.736171023 QPT(ph)PPFFGR ddPTM_HeLa_A486_30min_R1 6 QPTPPFFGR 9 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR;QPT(1)PPFFGR ;;;;; 121.68 0.001849 69047540000 4103760 4474790 3652030 1344973 5012170 3919360 4208500 4610600 3554010 4359100 TRUE FALSE FALSE 3816107.616 4120191.343 5066193.821 3131165.115 4383496.902 3435829.212 3155488.787 3560867.029 3862074.448 3267552.987 1.167879337 1.260940943 1.550454986 0.958259936 1.341522821 1.051499157 0.965703938 1.089765657 1.181946999 1 21.6397792 -5.914240465 1.229485254 1.061596057 1.289891913 0.26898222 0.152177528 0.613664842 1.951905738 0.065231563 0.080918481 1.22E-06 5.914240465 0.228295856 QPT(ph)PPSEAAASK ddPTM_HeLa_A485_30min_R1 1 QPTPPSEAAASK 12 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 QPT(0.997)PPS(0.003)EAAASK 82.529 0.022662 304110000 427200 347370 199200 381690 254570 302300 338800 436810 270780 871500 TRUE FALSE FALSE 522229.1662 387991.8998 272892.3694 402540.7582 229224.117 318127.9606 266412.6123 329681.6626 325123.0623 654251.0888 0.79820909 0.593032104 0.417106481 0.615269527 0.350361078 0.486247507 0.407202398 0.503906938 0.496939276 1 19.31948489 -10.57194654 8.958583579 1.000071524 0.511116154 0.586988376 0.120966933 0.000175129 8.37E-06 0.118699392 0.028784683 2.68E-11 10.57194654 -0.48895537 QPTAEGSGSDAHSVESLTAQNLSLHSGTAT(ph)PPLTSR ddPTM_HeLa_A485_30min_R1 1 QPTAEGSGSDAHSVESLTAQNLSLHSGTATPPLTSR 36 0 Q9UDT6;Q9UDT6-2 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 QPTAEGSGSDAHSVESLTAQNLS(0.001)LHS(0.005)GT(0.061)AT(0.931)PPLT(0.001)S(0.001)R 168.04 3.62E-14 404150000 47145 89165 97317 45678 105690 76389 85938 89632 82498 54450 TRUE FALSE FALSE 57632.2426 99592.07112 133318.608 48173.27348 95167.1325 80388.60992 67576.64425 67649.61146 99054.59188 40876.61708 1.409907344 2.436406881 3.261488292 1.17850441 2.328155784 1.966616018 1.653185833 1.654970893 2.423258062 1 15.31898818 -10.82316651 0.238340796 1.19E-11 2.213525571 0.211156946 0.581385731 44.3642989 1.701335752 27.35212218 1.045267793 1.50E-11 10.82316651 2.213525571 QPTAEGSGSDAHSVESLTAQNLSLHSGTAT(ph)PPLTSR ddPTM_HeLa_A486_30min_R1 2 QPTAEGSGSDAHSVESLTAQNLSLHSGTATPPLTSR 36 0 Q9UDT6;Q9UDT6-2 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 QPTAEGSGSDAHSVESLTAQNLSLHS(0.083)GT(0.2)AT(0.693)PPLT(0.012)S(0.012)R;QPTAEGSGSDAHSVESLTAQNLSLHS(0.001)GT(0.002)AT(0.941)PPLT(0.028)S(0.028)R ; 218.24 4.39E-39 692150000 299910 307030 341050 5940.8 393170 192446 230090 231840 296200 121822 TRUE FALSE FALSE 278887.8577 282699.8246 473113.6936 13830.48263 343854.9524 168703.9692 172519.0484 179055.093 321874.8545 91316.97827 3.054063582 3.095807921 5.1810047 0.151455763 3.765509535 1.847454574 1.889232995 1.960808345 3.524808426 1 16.4785955 -5.250208398 24.9997575 2.120033879 3.708843446 0.330968217 1.137342964 924.7101955 2058367.61 0.294922344 0.504963629 5.62E-06 5.250208398 1.588809567 QPTETPVASQSSDKPS(ph)RDPETPR ddPTM_HeLa_A486_30min_R1 1 QPTETPVASQSSDKPSRDPETPR 23 2 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 QPTETPVAS(0.009)QS(0.002)S(0.002)DKPS(0.565)RDPET(0.422)PR 63.323 0.0071969 775790000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 QPTETPVASQSSDKPSRDPET(ph)PR ddPTM_HeLa_A485_30min_R1 1 QPTETPVASQSSDKPSRDPETPR 23 2 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 QPTETPVASQSSDKPS(0.001)RDPET(0.999)PR 138.61 6.39E-07 532060000 912440 840070 590520 780910 897270 933870 1122300 1161200 712210 1239000 TRUE FALSE FALSE 1115409.13 938308.8789 808977.9216 823569.1359 807934.6483 982765.9892 882511.4367 876413.8793 855144.0142 930140.1021 1.199184002 1.008782308 0.869737709 0.885424824 0.868616079 1.056578452 0.948794095 0.94223857 0.919371192 1 19.82708851 -4.330987755 3.131637791 0.934848353 1.220048844 0.666802039 0.055873321 0.17923525 2.808991457 0.014954072 0.113501591 4.67E-05 4.330987755 0.285200491 QPTETPVASQSSDKPSRDPET(ph)PR ddPTM_HeLa_A486_30min_R1 1 QPTETPVASQSSDKPSRDPETPR 23 2 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 QPTETPVASQSSDKPS(0.001)RDPET(0.999)PR 174.15 8.14E-15 557980000 744080 726420 549140 321240 850240 755890 871500 811290 601770 1002500 TRUE FALSE FALSE 691923.8344 668855.8336 761781.7145 747862.9546 743594.971 662635.9771 653441.4822 626576.9773 653931.9081 751467.4748 0.920763516 0.890066245 1.013725464 0.995203358 0.989523826 0.881789298 0.869553912 0.83380452 0.870206536 1 19.51935114 -6.27541686 22.90055111 0.879338802 0.962602345 0.295398443 0.053132648 297.8109813 487927.4977 0.019047078 0.016904417 5.30E-07 6.27541686 0.083263543 QPVGGGQK(ac)LLTR ddPTM_HeLa_A485_30min_R1 2 QPVGGGQKLLTR 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; QPVGGGQK(1)LLTR;QPVGGGQK(1)LLTR 218.55 4.64E-20 184250000 16470.1 27005 28027 21925 33840 26120 33243 42956 33195 37162 FALSE TRUE FALSE 20133.81692 30162.99984 38395.3536 23122.70723 30470.77078 27487.60281 26140.36148 32420.97365 39856.93202 27898.19732 0.721688814 1.081180963 1.376266472 0.828824421 1.092212892 0.9852824 0.93699106 1.162117153 1.42865618 1 14.76788428 -7.476152726 6.810746499 1.24077501 1.018244216 0.176249605 0.190389707 0.347008977 41.61714292 0.106369633 0.049109076 3.34E-08 7.476152726 -0.222530793 QPVGGGQK(ac)LLTR ddPTM_HeLa_A486_30min_R1 2 QPVGGGQKLLTR 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; QPVGGGQK(1)LLTR;QPVGGGQK(1)LLTR 206.36 8.32E-14 202293000 31985 30562 25716 8830.6 35349 28904 33244 30887 30879 32841 FALSE TRUE FALSE 29743.01667 28140.15582 35673.9239 20558.08307 30915.1988 25338.11835 24925.99958 23854.70436 33555.61658 24617.39984 1.208211138 1.143100246 1.44913452 0.835103756 1.255827139 1.029276793 1.012535838 0.969018032 1.36308533 1 14.58739077 -5.253930018 24.99956189 1.069216602 1.254443772 0.252574718 0.157502098 866.9964866 2886328.898 0.041136451 0.069434164 5.57E-06 5.253930018 0.18522717 QPVSEPPADQVASDMPHS(ph)PTLR ddPTM_HeLa_A485_30min_R1 5 QPVSEPPADQVASDMPHSPTLR 22 0 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 0 QPVSEPPADQVASDMPHS(0.843)PT(0.157)LR;QPVSEPPADQVASDMPHS(0.789)PT(0.211)LR;QPVSEPPADQVASDMPHS(1)PTLR;QPVSEPPADQVASDMPHS(0.982)PT(0.018)LR;QPVSEPPADQVASDMPHS(0.96)PT(0.04)LR ;;;; 239.49 8.18E-47 1429600000 637442 801719 851599 625078 924367 732437 925110 950110 762529 948900 TRUE FALSE FALSE 779238.7738 895473.063 1166640.908 659224.4284 832333.7758 770786.2688 727452.691 717094.0328 915561.576 712356.6932 1.093888471 1.257057134 1.637720147 0.925413398 1.168422763 1.082022919 1.021191628 1.006650235 1.28525721 1 19.44224029 -5.289831957 24.99983849 1.072715093 1.322305642 0.366600738 0.156314891 765.0979507 673671.7702 0.043708482 0.064843999 5.13E-06 5.289831957 0.24959055 QPVSEPPADQVASDMPHS(ph)PTLR ddPTM_HeLa_A486_30min_R1 2 QPVSEPPADQVASDMPHSPTLR 22 0 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 0 QPVSEPPADQVASDMPHS(0.993)PT(0.007)LR;QPVSEPPADQVASDMPHS(1)PTLR ; 239.15 8.39E-47 596420000 353850 348710 322250 43834 391220 294080 325970 317970 325030 275650 TRUE FALSE FALSE 329046.9423 321076.9496 447033.8302 102047.7672 342149.5396 257799.3996 244408.8582 245575.1722 353203.8621 206625.4458 1.592480253 1.553908079 2.163498442 0.493878026 1.655892566 1.247665304 1.182859436 1.188504016 1.709391894 1 17.65665841 -5.234828443 24.98345952 1.237895429 1.748356726 0.342374632 0.353157415 903.7862232 848511.2972 0.091628099 0.158647103 5.82E-06 5.234828443 0.510461297 QPVYYDELDAASSS(ph)LRR ddPTM_HeLa_A485_30min_R1 1 QPVYYDELDAASSSLRR 17 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 QPVYYDELDAAS(0.007)S(0.031)S(0.961)LRR 114.78 6.49E-05 203430000 33254 33348 42790 36018 48976 36912 65271 55103 41894 45279 TRUE FALSE FALSE 40651.23758 37247.75851 58619.80164 37985.57214 44099.77747 38844.65524 51325.31763 41588.90285 50301.74153 33991.7786 1.195913814 1.095787277 1.724528814 1.117492926 1.297365989 1.142766188 1.509933277 1.223498874 1.479820815 1 15.05289823 QQAAYYAQTS(ph)PQGMPQHPPAPQGQ ddPTM_HeLa_A485_30min_R1 4 QQAAYYAQTSPQGMPQHPPAPQGQ 24 0 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 QQAAYYAQT(0.03)S(0.97)PQGMPQHPPAPQGQ;QQAAYYAQT(0.043)S(0.957)PQGMPQHPPAPQGQ;QQAAYYAQT(0.001)S(0.999)PQGMPQHPPAPQGQ;QQAAYYAQT(0.011)S(0.989)PQGMPQHPPAPQGQ ;;; 170.1 2.39E-14 2370770000 478988 629123 581599 525024 733290 608575 779793 771111 576413 747695 TRUE FALSE FALSE 585537.2281 702693.4622 796756.6725 553704.7317 660281.0729 640439.046 613183.8552 581994.8182 692093.8019 561308.3968 1.043164919 1.251884822 1.419463306 0.986453677 1.176324952 1.140975353 1.092418818 1.036853932 1.233000977 1 19.09843412 -5.279097964 24.99886537 1.101860683 1.239542433 0.256835001 0.111072084 1119.749256 1585201.138 0.030920317 0.045979059 5.26E-06 5.279097964 0.13768175 QQAAYYAQTS(ph)PQGMPQHPPAPQGQ ddPTM_HeLa_A486_30min_R1 4 QQAAYYAQTSPQGMPQHPPAPQGQ 24 0 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 QQAAYYAQT(0.029)S(0.971)PQGMPQHPPAPQGQ;QQAAYYAQT(0.118)S(0.882)PQGMPQHPPAPQGQ;QQAAYYAQT(0.243)S(0.757)PQGMPQHPPAPQGQ;QQAAY(0.002)Y(0.013)AQT(0.121)S(0.864)PQGMPQHPPAPQGQ ;;; 145.65 2.44E-09 2321870000 567185 580383 423093 209176 609040 572076 661614 657594 458353 666880 TRUE FALSE FALSE 527428.2604 534391.3374 586925.9404 486972.2992 532648.5241 501499.0796 496071.1794 507874.2014 498083.4071 499888.9073 1.055090947 1.069020195 1.174112751 0.974161043 1.065533794 1.00322106 0.992362847 1.015974137 0.996388197 1 18.93124799 -5.280068304 24.9999705 1.009167294 1.096369199 0.570444321 0.036755916 586.2703015 786771.6313 0.010261888 0.015254672 5.25E-06 5.280068304 0.087201905 QQADKESEVS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 QQADKESEVSPSR 13 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 QQADKES(0.002)EVS(0.786)PS(0.212)R 45.452 0.032971 260310000 210590 213120 165480 233840 270050 240260 292770 353540 201690 327940 TRUE FALSE FALSE 257435.019 238042.5301 226697.9382 246614.0871 243162.8738 252839.6421 230217.2978 266833.7607 242167.333 246190.5933 1.045673661 0.966903434 0.920822909 1.001720187 0.987701726 1.027007729 0.935118173 1.08385035 0.983657945 1 17.90941611 -6.723011174 1.009771513 1.016133013 0.980679682 0.042596572 0.04549165 1.492025763 3.027630821 0.032324256 0.01901897 1.89E-07 6.723011174 -0.03545333 QQADKESEVS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 QQADKESEVSPSR 13 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 QQADKESEVS(0.969)PS(0.03)R 83.54 0.0016045 264380000 244680 222300 148450 101050 249810 249330 297590 275850 188140 315410 TRUE FALSE FALSE 227529.1955 204684.1384 205933.8156 235249.5068 218476.5004 218570.1996 223129.8344 213044.9768 204448.1267 236429.283 0.962356239 0.86573091 0.871016538 0.995010025 0.924067009 0.924463319 0.943748725 0.901093866 0.864732676 1 17.85104921 QQADKESEVSPS(ph)R ddPTM_HeLa_A486_30min_R1 1 QQADKESEVSPSR 13 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 QQADKES(0.001)EVS(0.34)PS(0.658)R 78.244 0.0030684 209260000 329250 331970 210620 143120 335360 357690 410000 386260 247780 434750 TRUE FALSE FALSE 306171.2752 305663.4882 292177.7046 333190.5929 293296.0217 313561.8445 307413.6635 298317.03 269257.7699 325885.7703 0.939504892 0.937946717 0.896564782 1.022415286 0.899996405 0.962183296 0.943317234 0.91540367 0.82623359 1 18.31400683 -7.360791385 4.687558937 0.901034009 0.943210806 0.051968456 0.051167255 0.502345353 18.00832731 0.027825373 0.012735415 4.36E-08 7.360791385 0.042176797 QQALSHILTALQIMYAR ddPTM_HeLa_A485_30min_R1 1 QQALSHILTALQIMYAR 17 0 O95714;H3BUQ1;A0A3B3IRP6;A0A0J9YVP0 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 0 0 167.05 4.83E-11 3834600 8361.2 9479.4 9194 6300.3 11097 8240.8 10648 12915 5965.3 9402.3 FALSE FALSE TRUE 10221.12009 10587.93337 12595.24319 6644.469436 9992.143716 8672.275545 8372.967814 9747.576 7162.480993 7058.479647 1.448062558 1.500030304 1.78441305 0.941345696 1.415622658 1.228632224 1.186228229 1.380973877 1.014734242 1 12.78514175 -3.28533854 0.158449082 0.932173666 2.348078729 0.384577068 0.197461296 34.02043236 0.67879749 0.722368242 10.06039603 0.000518396 3.28533854 1.415905062 QQALSHILTALQIMYAR ddPTM_HeLa_A486_30min_R1 1 QQALSHILTALQIMYAR 17 0 O95714;H3BUQ1;A0A3B3IRP6;A0A0J9YVP0 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 0 0 104.61 0.00024426 9665600 7396.5 8821.4 9089.2 3715.7 12863 8005.3 10825 10381 8240.1 10205 FALSE FALSE TRUE 6878.043546 8122.360137 12608.78166 8650.337381 11249.6026 7017.687478 8116.470505 8017.472916 8954.358503 7649.601577 0.899137488 1.061801723 1.648292598 1.130821951 1.470612879 0.917392548 1.061031797 1.048090261 1.170565344 1 12.90116889 -6.279193199 24.80628438 1.043772631 1.248495369 0.198275961 0.203520867 1320.770136 1845422.213 0.073281802 0.064767471 5.26E-07 6.279193199 0.204722738 QQASKS(ph)PYNGVR ddPTM_HeLa_A485_30min_R1 5 QQASKSPYNGVR 12 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 0 QQAS(0.001)KS(0.999)PYNGVR;QQAS(0.145)KS(0.855)PYNGVR;QQASKS(1)PYNGVR;QQAS(0.008)KS(0.992)PYNGVR;QQAS(0.035)KS(0.965)PYNGVR ;;;; 205.68 1.54E-17 6600900000 4421580 5577560 4093330 4569660 6561490 5840990 8050880 9357370 4533780 6327210 TRUE FALSE FALSE 5405145.217 6229807.124 5607623.105 4819288.955 5908205.017 6146815.205 6330743.718 7062460.336 5443668.06 4749952.991 1.137936571 1.311551322 1.180563916 1.01459719 1.243844945 1.294079166 1.332801342 1.48684847 1.146046723 1 22.1794818 -5.98936861 24.71136366 1.285383413 1.167781519 0.066641361 0.137462706 382.6929482 889516.106 0.042019744 0.047599083 1.02E-06 5.98936861 -0.117601894 QQASKS(ph)PYNGVR ddPTM_HeLa_A486_30min_R1 6 QQASKSPYNGVR 12 1 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 0 QQAS(0.005)KS(0.995)PYNGVR;QQAS(0.47)KS(0.53)PYNGVR;QQAS(0.001)KS(0.999)PYNGVR;QQAS(0.012)KS(0.988)PYNGVR;QQAS(0.015)KS(0.985)PYNGVR;QQAS(0.069)KS(0.931)PYNGVR ;;;;; 171.46 6.06E-11 5990540000 6211380 5648140 3724970 2398280 6472610 5825220 7310500 7319350 4656620 7410720 TRUE FALSE FALSE 5775994.338 5200560.816 5167378.142 5583317.042 5660754.899 5106563.583 5481335.577 5652893.785 5060259.571 5555027.476 1.039777816 0.936189936 0.930216487 1.005092606 1.019032745 0.919268825 0.986734197 1.01761761 0.910933311 1 22.40536262 -4.24170077 23.78453363 0.970413115 1.039777942 0.21863537 0.039846133 3873.738483 4667619.007 0.009845308 0.347086631 5.73E-05 4.24170077 0.069364827 QQDAQEFFLHLINMVER ddPTM_HeLa_A485_30min_R1 1 QQDAQEFFLHLINMVER 17 0 P45974;P45974-2 P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 0 125.18 4.19E-06 0 6043.8 8531.4 7677.4 5013.4 9223.1 7417.6 8256.1 10323 6734.7 8717.9 FALSE FALSE TRUE 7388.222459 9529.073017 10517.58974 5287.269347 8304.81578 7805.974066 6492.116789 7791.268064 8086.292516 6544.687971 1.128888419 1.45600112 1.607042198 0.807871876 1.268939912 1.192719057 0.991967351 1.190472044 1.235550503 1 12.6761087 -5.248823772 24.99939608 1.112777515 1.403179611 0.389668927 0.170808116 822.6586287 1630198.005 0.045827603 0.07867293 5.64E-06 5.248823772 0.290402097 QQDLHLES(ph)PQR ddPTM_HeLa_A485_30min_R1 1 QQDLHLESPQR 11 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLES(1)PQR 88.561 0.0012838 0 286650 327110 294580 255730 304300 276730 267810 246920 273490 328420 TRUE FALSE FALSE 350414.3036 365362.669 403557.4005 269699.8824 274002.8235 291219.1549 210590.2057 186362.4828 328376.9344 246550.9381 1.421265343 1.48189527 1.636811458 1.093891122 1.111343666 1.181172366 0.854144816 0.755878214 1.331882721 1 17.91152622 -5.346291528 5.283375552 1.032183975 1.508889092 0.642762882 0.159396957 0.138929941 6.477266778 0.04678372 0.070535761 4.51E-06 5.346291528 0.476705117 QQDLHLES(ph)PQR ddPTM_HeLa_A486_30min_R1 1 QQDLHLESPQR 11 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLES(1)PQR 118.2 0.0001831 248830000 371650 449250 301170 101150 330300 352730 338880 321270 330000 420640 TRUE FALSE FALSE 345599.2542 413649.7939 417791.0896 235482.3118 288870.6941 309213.7589 254088.6397 248123.8343 358604.6657 315309.0061 1.09606528 1.311887025 1.325021111 0.746830275 0.916151104 0.980668972 0.805840096 0.786922763 1.137311839 1 18.26640685 -5.253403169 24.99737669 0.900448252 1.251080745 0.606382874 0.123015647 385.5007956 1199133.354 0.032945256 0.05578745 5.58E-06 5.253403169 0.350632493 QQDLHLES(ph)PQRQPEY(ph)SPES(ph)PR ddPTM_HeLa_A486_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 QQDLHLES(1)PQRQPEY(0.539)S(0.461)PES(1)PR 90.71 0.00062943 456950000 188680 210310 192090 69157 233480 150880 198090 216880 166640 199230 TRUE FALSE FALSE 175454.5063 193644.2697 266472.3923 161000.991 204194.7613 132265.9596 148525.7868 167501.1585 181084.4894 149341.5112 1.174854231 1.296654012 1.784315628 1.078072598 1.367300757 0.88566105 0.994537859 1.121598121 1.212552946 1 17.18825571 -5.893251585 1.892112314 1.055722487 1.383764563 0.335032601 0.196534846 0.390667695 2.864324391 0.071482719 0.084910497 1.28E-06 5.893251585 0.328042076 QQDLHLES(ph)PQRQPEYS(ph)PES(ph)PR ddPTM_HeLa_A485_30min_R1 2 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 QQDLHLES(0.998)PQRQPEY(0.071)S(0.931)PES(1)PR;QQDLHLES(1)PQRQPEY(0.012)S(0.988)PES(1)PR ; 131.03 2.08E-06 2790900000 798310 1122770 1125120 866030 1306720 992520 1231310 1228470 1010290 1113820 TRUE FALSE FALSE 975891.3054 1254068.185 1541348.708 913339.026 1176618.369 1044486.812 968230.5596 927185.8063 1213045.936 836165.1723 1.167103507 1.499785241 1.84335435 1.092294987 1.407160221 1.249139341 1.157941746 1.10885485 1.450725259 1 19.67342843 -5.295216318 24.99324083 1.221726891 1.503051808 0.31139283 0.199744636 755.6082499 559110.5842 0.055814188 0.082790539 5.07E-06 5.295216318 0.281324917 QQDLHLES(ph)PQRQPEYS(ph)PES(ph)PR ddPTM_HeLa_A486_30min_R1 3 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 QQDLHLES(1)PQRQPEY(0.006)S(0.994)PES(1)PR;QQDLHLES(1)PQRQPEY(0.059)S(0.949)PES(0.993)PR;QQDLHLES(0.999)PQRQPEY(0.483)S(0.521)PES(0.997)PR ;; 157.75 5.69E-10 2353800000 461110 522269 464531 179226 623040 476655 562600 568080 444146 522150 TRUE FALSE FALSE 428788.5702 480882.5024 644409.8438 417247.1856 544892.5136 417850.1524 421831.5294 438740.5851 482644.9329 391400.2414 1.095524542 1.228620863 1.646421682 1.066037119 1.392161925 1.067577656 1.077749794 1.120951238 1.233123749 1 18.57828512 -6.273981516 24.77221104 1.106056764 1.290409894 0.249334109 0.16097734 1036.380316 2046968.943 0.056195606 0.049888671 5.32E-07 6.273981516 0.18435313 QQDLHLES(ph)PQRQPEYS(ph)PESPR ddPTM_HeLa_A485_30min_R1 3 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 QQDLHLES(1)PQRQPEY(0.01)S(0.829)PES(0.161)PR;QQDLHLES(1)PQRQPEY(0.004)S(0.992)PES(0.004)PR;QQDLHLES(1)PQRQPEY(0.261)S(0.734)PES(0.005)PR ;; 169.39 2.70E-13 3936210000 751340 844980 828070 663470 995790 826730 999750 966650 794390 968220 TRUE FALSE FALSE 918472.9909 943793.0607 1134407.552 699713.6861 896645.6512 870016.3044 786145.2453 729577.5719 953816.7864 726860.5728 1.26361647 1.298451307 1.560694849 0.962651865 1.233586859 1.196950745 1.081562647 1.003737992 1.312241745 1 19.47131913 -5.266602124 24.99996598 1.120334746 1.366673918 0.467184156 0.127626841 387.4216989 1876043.498 0.034948781 0.053676154 5.41E-06 5.266602124 0.246339172 QQDLHLES(ph)PQRQPEYS(ph)PESPR ddPTM_HeLa_A486_30min_R1 3 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 QQDLHLES(1)PQRQPEYS(0.92)PES(0.08)PR;QQDLHLES(1)PQRQPEY(0.031)S(0.957)PES(0.012)PR;QQDLHLES(1)PQRQPEY(0.005)S(0.994)PESPR ;; 176.87 4.66E-14 4458300000 788610 861090 661330 259360 864180 799440 886930 932400 695600 840430 TRUE FALSE FALSE 733332.5114 792854.0924 917414.687 603803.1873 755786.4862 700813.2209 665010.733 720112.8741 755895.1681 629980.8577 1.164055229 1.258536799 1.456258037 0.95844688 1.199697542 1.112435739 1.055604666 1.14307104 1.199870058 1 19.26494847 -5.265270481 24.99997469 1.104924452 1.289508695 0.450692491 0.099452831 311.2557913 2031112.532 0.027355659 0.042347447 5.43E-06 5.265270481 0.184584243 QQDLHLES(ph)PQRQPEYSPESPR ddPTM_HeLa_A486_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLES(1)PQRQPEYSPESPR 136.3 2.60E-07 414620000 59171 62181 50375 27220 77335 64911 78752 73182 49936 76352 TRUE FALSE FALSE 55023.41846 57253.5511 69881.54909 63369.53562 67634.92318 56902.94079 59047.41665 56520.05615 54264.49269 57232.96223 0.96139386 1.000359738 1.221001786 1.107220964 1.18174773 0.994233717 1.031702962 0.987543785 0.948133568 1 15.80455866 -6.3086282 21.70541993 0.994005268 1.096875229 0.324824836 0.073478766 123.3892542 56754.27879 0.027795212 0.024513354 4.91E-07 6.3086282 0.102869961 QQDLHLESPQRQPEYS(ph)PES(ph)PR ddPTM_HeLa_A485_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 QQDLHLESPQRQPEY(0.009)S(0.993)PES(0.998)PR 117.83 3.91E-05 479880000 122560 226670 190470 132520 255880 244000 275560 335500 189120 199900 TRUE FALSE FALSE 149823.0492 253177.0847 260932.7791 139759.232 230403.6888 256775.4627 216684.3549 253218.099 227074.6493 150068.6089 0.998363684 1.687075576 1.738756566 0.931302243 1.535322347 1.711053795 1.443901936 1.687348879 1.513138897 1 17.1952627 -10.37902492 5.608009526 0.999840458 1.484516268 0.210584563 0.273051067 0.000537152 5.95E-05 0.260734265 0.063216803 4.18E-11 10.37902492 0.48467581 QQDLHLESPQRQPEYS(ph)PESPR ddPTM_HeLa_A485_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLESPQRQPEYS(0.724)PES(0.276)PR 175.21 2.20E-14 4212000000 624270 1152900 856240 332860 1033900 1178200 1159900 1491100 711570 479160 TRUE FALSE FALSE 763136.7078 1287721.626 1172998.807 351043.299 930961.2858 1239888.73 912077.8895 1125405.387 854375.5721 359714.2303 2.121508252 3.579846216 3.260918552 0.975894945 2.588057984 3.446871505 2.535562435 3.12860958 2.375150884 1 18.45649171 -8.030886933 19.75363654 0.99999995 2.712585446 0.334316008 0.719539639 256.9731399 164347.9737 0.712285666 0.183911336 9.31E-09 8.030886933 1.712585496 QQDLHLESPQRQPEYSPES(ph)PR ddPTM_HeLa_A485_30min_R1 4 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLESPQRQPEYS(0.317)PES(0.683)PR;QQDLHLESPQRQPEYS(0.286)PES(0.714)PR;QQDLHLESPQRQPEYS(0.353)PES(0.647)PR;QQDLHLESPQRQPEYS(0.013)PES(0.987)PR ;;; 186.13 1.43E-19 6044560000 215001 486050 373373 162641 494090 441830 512120 674370 333463 277988 TRUE FALSE FALSE 262827.2307 542889.3194 511499.21 171525.666 444896.6647 464963.5356 402701.3784 508979.7001 400385.9654 208690.7076 1.259410319 2.60140629 2.450991786 0.82191329 2.131847028 2.228003062 1.92965649 2.438918848 1.91856154 1 17.67100684 QQDLHLESPQRQPEYSPES(ph)PR ddPTM_HeLa_A486_30min_R1 3 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLESPQRQPEYSPES(1)PR;QQDLHLESPQRQPEYS(0.013)PES(0.987)PR;QQDLHLESPQRQPEYS(0.042)PES(0.958)PR ;; 240.4 1.11E-46 3105890000 1055700 872420 999620 213838 1502060 696790 1062530 1182680 706260 973170 TRUE FALSE FALSE 981700.8816 803286.2619 1386699.635 497825.6708 1313657.629 610827.1342 796673.7557 913409.5817 767479.1855 729481.8977 1.345750847 1.101173675 1.900937692 0.682437319 1.800809085 0.837343786 1.092109014 1.252134679 1.052088047 1 19.47651265 -6.302300454 24.99928076 1.06532947 1.343216059 0.184617834 0.332821086 994.2406551 608285.0682 0.110147102 0.097141633 4.99E-07 6.302300454 0.277886589 QQDPS(ph)PGSNLGGGDDLK ddPTM_HeLa_A485_30min_R1 1 QQDPSPGSNLGGGDDLK 17 0 Q13951-2;J3KTD8 Q13951-2 CBFB Core-binding factor subunit beta 1 0 QQDPS(0.993)PGS(0.007)NLGGGDDLK 129.05 1.45E-05 187580000 138470 134590 125600 226040 171210 167590 187460 164870 143530 252860 TRUE FALSE FALSE 169272.1738 150329.1297 172064.6667 238387.9928 154163.7312 176364.7533 147407.6396 124435.374 172335.1545 189826.6555 0.891719729 0.791928453 0.906430481 1.25581938 0.812128996 0.929083183 0.776538148 0.655521079 0.907855401 1 17.53432306 -6.751349174 23.45530619 0.806272088 0.933074511 0.081621709 0.145811517 196.6147107 457043.9621 0.057514778 0.043947036 1.77E-07 6.751349174 0.126802423 QQDPS(ph)PGSNLGGGDDLK ddPTM_HeLa_A486_30min_R1 1 QQDPSPGSNLGGGDDLK 17 0 Q13951-2;J3KTD8 Q13951-2 CBFB Core-binding factor subunit beta 1 0 QQDPS(1)PGSNLGGGDDLK 190.67 5.73E-18 203370000 277320 284400 211550 123040 281230 258950 328120 311560 223590 337160 TRUE FALSE FALSE 257881.3001 261863.1082 293467.8255 286443.3381 245955.511 227003.3818 246020.9055 240624.5893 242970.9612 252732.9415 1.020370746 1.036125749 1.161177581 1.13338347 0.973183431 0.898194673 0.97344218 0.952090329 0.961374326 1 17.94725419 -5.848104129 6.247690818 0.953389447 1.088924012 0.657229507 0.045300801 0.13344583 7.761881136 0.015119851 0.017268183 1.42E-06 5.848104129 0.135534564 QQDS(ph)QPEEVMDVLEMVENVK ddPTM_HeLa_A485_30min_R1 2 QQDSQPEEVMDVLEMVENVK 20 0 Q9H307 Q9H307 PNN Pinin 1 0 QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK ; 68.567 0.0029541 19446000 19598.5 18524.1 13986.6 18575.4 24953.5 18108.9 24270.7 20038.3 14911.4 28465 TRUE FALSE FALSE 23958.11871 20690.33236 19160.82537 19590.12707 22469.04192 19057.054 19085.06667 15123.87551 17903.9812 21369.19936 1.121151912 0.968231519 0.896656213 0.916745955 1.05146859 0.891800094 0.893110984 0.707741795 0.837840525 1 14.38324524 -6.635091021 2.427240498 0.830754921 0.979686114 0.296589006 0.091733426 0.338212175 4.05256839 0.040601269 0.029370235 2.32E-07 6.635091021 0.148931193 QQDS(ph)QPEEVMDVLEMVENVK ddPTM_HeLa_A486_30min_R1 2 QQDSQPEEVMDVLEMVENVK 20 0 Q9H307 Q9H307 PNN Pinin 1 0 QQDS(1)QPEEVMDVLEMVENVK;QQDS(1)QPEEVMDVLEMVENVK ; 78.794 0.0014648 25616000 26949 24682 15570 12319.1 27985 28287 33376 30133 26431 35233 TRUE FALSE FALSE 25060.01426 22726.10843 21599.12098 28679.48737 24474.86035 24797.23754 25024.97178 23272.3737 28722.06036 26410.42747 0.948868181 0.860497561 0.817825497 1.085915304 0.926712011 0.938918447 0.947541338 0.881181258 1.08752728 1 14.68882003 -5.071561375 0.212585886 1.015567616 0.822599748 0.153273967 0.077411718 18.71701109 1.080162831 0.172938559 0.972472535 8.48E-06 5.071561375 -0.192967867 QQELTHQEHR ddPTM_HeLa_A485_30min_R1 1 QQELTHQEHR 10 0 P18206;P18206-2;P18206-3 P18206 VCL Vinculin 0 0 101.95 0.0027311 424400000 29916 41986 36805 35174 48851 35532 41587 50223 37987 40786 FALSE FALSE TRUE 36570.71099 46895.89747 50420.70108 37095.46655 43987.22291 37392.40058 32701.59772 37905.7305 45610.64246 30618.80081 1.194387436 1.531604643 1.646723573 1.211525781 1.436608285 1.221223549 1.068023464 1.237988736 1.489628635 1 14.90213016 -6.003247723 1.541257108 1.211440371 1.439028238 0.229278791 0.175840797 0.593540037 2.877008497 0.07131571 0.079203555 9.93E-07 6.003247723 0.227587867 QQELTHQEHR ddPTM_HeLa_A486_30min_R1 1 QQELTHQEHR 10 0 P18206;P18206-2;P18206-3 P18206 VCL Vinculin 0 0 122.51 0.0002919 170410000 55450 54510 54164 17708 61686 53104 56406 58889 55594 64417 FALSE FALSE TRUE 51563.24134 50190.42908 75137.75136 41225.11891 53948.76668 46552.5684 42292.6222 45481.26024 60412.93268 48286.56392 1.067858989 1.039428466 1.556079896 0.853759629 1.117262491 0.964089482 0.875867297 0.941903017 1.251133396 1 15.55933418 QQFS(ph)PSMTER ddPTM_HeLa_A485_30min_R1 1 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 QQFS(0.993)PS(0.007)MTER 231.74 9.73E-18 342440000 319900 488570 469860 334230 468110 442250 521820 485890 367710 455770 TRUE FALSE FALSE 391060.6514 545704.0115 643680.7665 352488.1386 421503.3248 465405.5262 410328.8941 366724.7157 441506.0242 342154.9268 1.142934445 1.59490327 1.881255291 1.030200389 1.231907805 1.360218689 1.199248825 1.071808958 1.290368747 1 18.3842902 -5.280829837 24.88108725 1.183935188 1.545218291 0.422366017 0.198040545 732.2206377 939555.673 0.056232681 0.083546737 5.24E-06 5.280829837 0.361283103 QQFS(ph)PSMTER ddPTM_HeLa_A486_30min_R1 2 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 QQFS(0.996)PS(0.004)MTER;QQFS(0.972)PS(0.028)MTER ; 166.45 4.04E-07 837580000 791320 845960 712680 243240 973280 726270 779830 917650 756280 851930 TRUE FALSE FALSE 735852.5544 778923.0487 988648.7822 566275.0127 851202.1469 636670.1916 584708.2858 708721.1272 821834.9593 638601.1829 1.152288117 1.219733176 1.548147433 0.886742818 1.332916646 0.996976217 0.915607897 1.109802403 1.286929905 1 19.2845557 -5.270603116 24.98621631 1.080926295 1.298023944 0.288752346 0.165932133 871.5293017 2376345.871 0.046604044 0.070215739 5.36E-06 5.270603116 0.217097649 QQGHEPVS(ph)PR ddPTM_HeLa_A485_30min_R1 3 QQGHEPVSPR 10 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 QQGHEPVS(1)PR;QQGHEPVS(1)PR;QQGHEPVS(1)PR ;; 132.97 4.60E-05 8020060000 3936980 4344850 4573060 4193930 4960010 3788630 4798450 4114570 4065810 5324770 TRUE FALSE FALSE 4812747.619 4852942.412 6264825.195 4423033.776 4466173.989 3986996.808 3773221.958 3105465.256 4881780.773 3997402.834 1.203968631 1.214023858 1.567223884 1.10647687 1.11726893 0.997396803 0.943918368 0.77687073 1.221238133 1 21.93063154 -5.745408678 1.931132953 0.976715547 1.313378451 0.479341932 0.145077469 0.27462481 2.11037702 0.049680246 0.0657009 1.80E-06 5.745408678 0.336662903 QQGHEPVS(ph)PR ddPTM_HeLa_A486_30min_R1 3 QQGHEPVSPR 10 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 QQGHEPVS(1)PR;QQGHEPVS(1)PR;QQGHEPVS(1)PR ;; 139.3 1.52E-05 9291070000 2901680 3522550 2560030 1026710 3310340 2973190 3155860 3371810 2827800 3181600 TRUE FALSE FALSE 2698287.216 3243410.309 3551342.176 2390232.767 2895126.29 2606388.047 2366230.449 2604122.469 3072915.981 2384906.651 1.131401606 1.359973694 1.489090642 1.00223326 1.213936943 1.092867952 0.992169001 1.091917987 1.288484805 1 21.18550137 -5.270742215 24.95532093 1.101488405 1.330137157 0.431378741 0.120636947 594.3973257 1594499.433 0.033978843 0.051181877 5.36E-06 5.270742215 0.228648752 QQGPSS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 QQGPSSPQR 9 0 O60336-4;O60336-3;O60336-6;O60336;O60336-2 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 QQGPS(0.037)S(0.963)PQR 113.27 0.0012041 0 470270 646250 555390 445700 641620 550600 616060 786750 519480 598190 TRUE FALSE FALSE 574879.9391 721823.3159 760851.8727 470047.4624 577738.0599 579428.5646 484433.7483 593798.3289 623734.871 449072.2419 1.280150242 1.607365694 1.694275 1.046707898 1.286514743 1.290279181 1.07874347 1.322277962 1.38894105 1 18.77658802 -5.260158046 24.99879723 1.217425345 1.535273849 0.476945052 0.155470364 101.4847573 1979948.606 0.042517466 0.068754833 5.49E-06 5.260158046 0.317848504 QQGPSS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 QQGPSSPQR 9 0 O60336-4;O60336-3;O60336-6;O60336;O60336-2 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 QQGPS(0.043)S(0.957)PQR 124.18 0.00066116 0 732400 671230 655990 259950 852170 643870 799370 736010 640500 758260 TRUE FALSE FALSE 681062.5421 618039.2902 910006.896 605176.7371 745282.8924 564435.8658 599359.1711 568436.59 696019.0557 568386.7606 1.198237871 1.087356943 1.601034646 1.064727012 1.311224934 0.993048932 1.054491787 1.000087668 1.224551844 1 19.11651342 -6.26101059 24.99994544 1.054445007 1.252270159 0.299861708 0.151335862 51.35517293 2994249.778 0.050226462 0.047393581 5.48E-07 6.26101059 0.197825152 QQKPTLS(ph)GQR ddPTM_HeLa_A485_30min_R1 3 QQKPTLSGQR 10 1 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;C9JV57;C9J188;C9JWF5;C9JFN4;C9IZ80 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 0 QQKPT(0.3)LS(0.7)GQR;QQKPT(0.01)LS(0.99)GQR;QQKPT(0.172)LS(0.828)GQR ;; 131.35 3.58E-05 576450000 789350 858790 708740 854480 1139260 996680 1195360 1405730 814040 1215600 TRUE FALSE FALSE 964938.1843 959218.02 970932.4191 901158.0787 1025831.274 1048864.624 939961.5708 1060972.513 977410.3612 912573.2915 1.057381575 1.051113405 1.063950072 0.987491183 1.124108369 1.149348368 1.030012142 1.162616223 1.071048616 1 19.79958091 -5.781351656 24.99627956 1.097668893 1.04249084 0.172651202 0.051180869 366.3700516 459909.6087 0.01511105 0.017156321 1.65E-06 5.781351656 -0.055178052 QQKPTLS(ph)GQR ddPTM_HeLa_A486_30min_R1 4 QQKPTLSGQR 10 1 Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3;C9JV57;C9J188;C9JWF5;C9JFN4;C9IZ80 Q7L1Q6-2 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 0 QQKPT(0.001)LS(0.999)GQR;QQKPT(0.004)LS(0.996)GQR;QQKPT(0.093)LS(0.907)GQR;QQKPT(0.02)LS(0.98)GQR ;;; 133.04 3.03E-05 1091510000 1279760 1162930 787610 425671 1259430 1183030 1341910 1417090 992930 1520840 TRUE FALSE FALSE 1190055.433 1070775.191 1092593.685 990983.6002 1101460.546 1037079.787 1006149.925 1094449.542 1078997.972 1140011.765 1.043897501 0.93926679 0.958405622 0.869274889 0.96618349 0.909709723 0.882578545 0.96003355 0.946479681 1 20.12061728 -4.085370299 2.070435754 0.930785139 1.120126252 0.407784274 0.03809467 1.27955341 3.938701527 0.009706245 0.535134105 8.22E-05 4.085370299 0.189341112 QQLPQT(ph)PPSCLK ddPTM_HeLa_A485_30min_R1 1 QQLPQTPPSCLK 12 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 QQLPQT(0.868)PPS(0.132)CLK 90.731 0.0024168 0 198890 187660 151370 201550 224400 205950 266860 250410 160610 269440 TRUE FALSE FALSE 243132.3943 209605.2046 207368.062 212560.1661 202057.9481 216733.2235 209843.181 188996.5549 192842.9538 202273.5667 1.20199786 1.036246149 1.025186165 1.050854887 0.998934025 1.071485647 1.037422657 0.934361113 0.953376939 1 17.62594827 -1.000003119 0.993385911 1.005926024 185.4527511 0.681375083 0.03940371 1155.787618 1.611090592 0.014110289 485152.8429 0.099999282 1.000003119 184.4468251 QQLPQT(ph)PPSCLK ddPTM_HeLa_A486_30min_R1 2 QQLPQTPPSCLK 12 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 QQLPQT(0.997)PPS(0.003)CLK;QQLPQT(1)PPSCLK ; 124.3 0.00058011 0 360010 318140 217828 124327 346750 318730 382920 363450 245876 405250 TRUE FALSE FALSE 334775.1581 292929.4278 302176.8352 289439.5391 303257.3817 279408.3332 287109.3659 280700.3691 267188.7296 303772.7623 1.102057853 0.964304454 0.994746313 0.95281597 0.998303401 0.919793898 0.945145193 0.924047196 0.879567765 1 18.21263299 -1 0.625300842 0.93830095 12.12637023 0.600102437 0.036585805 132.8180232 0.940344631 0.015557856 2044.453712 0.1 1 11.18806928 QQLQRT(ph)KLS(ph)R ddPTM_HeLa_A486_30min_R1 1 QQLQRTKLSR 10 2 D6RFX7;D6RJ87;Q9C073 D6RFX7 FAM117A Protein FAM117A 2 0 QQLQRT(1)KLS(1)R 54.023 0.034133 2179100000 294460 428290 691470 23011 607790 242840 207620 279890 387000 105490 TRUE FALSE FALSE 273819.8746 394350.7406 959225.7022 53570.77091 531555.3108 212880.8698 155671.28 216165.157 420545.4716 79074.61738 3.462803662 4.987071119 12.13063982 0.677471137 6.722198961 2.692151753 1.968663083 2.733685778 5.318337104 1 16.27092705 -5.840599024 1.371717458 2.900494871 6.198482021 0.175214186 2.924718162 0.741234273 2.915738997 1.1544201 1.501833514 1.44E-06 5.840599024 3.29798715 QQLS(ph)PDRQPQSSGPDR ddPTM_HeLa_A485_30min_R1 1 QQLSPDRQPQSSGPDR 16 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y307 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 QQLS(1)PDRQPQSSGPDR 112.58 8.00E-05 634780000 113460 151350 167470 131200 181650 139080 154630 192770 141500 166810 TRUE FALSE FALSE 138698.7856 169049.0659 229424.122 138367.1238 163564.2882 146362.0137 121592.0373 145492.8552 169897.7521 125227.3369 1.107575941 1.349937403 1.832061015 1.104927464 1.306138837 1.168770473 0.970970399 1.161829828 1.356714566 1 16.93419001 QQLS(ph)PDRQPQSSGPDR ddPTM_HeLa_A486_30min_R1 3 QQLSPDRQPQSSGPDR 16 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y307 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 QQLS(1)PDRQPQSSGPDR;QQLS(1)PDRQPQSSGPDR;QQLS(1)PDRQPQSSGPDR ;; 161.04 7.06E-10 1239250000 336288 370822 278392 126258 385707 301547 354890 381187 290546 327403 TRUE FALSE FALSE 312715.9478 341436.7142 386192.838 293935.0047 337328.0315 264345.197 266092.7684 294399.0414 315730.7612 245419.1578 1.274211641 1.391239043 1.573605099 1.197685655 1.374497552 1.077117204 1.084237966 1.199576447 1.286495985 1 17.90488835 -5.976341488 1.730345326 1.141812007 1.39105461 0.464404358 0.119597848 0.334398142 2.035329923 0.045764057 0.051466592 1.06E-06 5.976341488 0.249242604 QQLS(ph)PSPGQEAGILPETEK ddPTM_HeLa_A486_30min_R1 1 QQLSPSPGQEAGILPETEK 19 0 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 QQLS(0.752)PS(0.248)PGQEAGILPETEK 126.02 5.69E-07 0 21436 25759 20338 5137 31003 23927 26534 23539 14800 26364 TRUE FALSE FALSE 19933.4471 23717.76303 28213.41827 11959.19561 27114.31465 20975.13001 19894.91255 18179.68355 16082.87592 19762.2828 1.00866116 1.200153002 1.427639638 0.605152539 1.372023411 1.061371817 1.006711257 0.919918197 0.813816707 1 14.27046199 -6.958065492 2.200998256 0.900358823 1.121096418 0.152412849 0.214916282 0.590425311 5.724754196 0.115857447 0.064408752 1.10E-07 6.958065492 0.220737594 QQNIS(ph)MQR ddPTM_HeLa_A486_30min_R1 2 QQNISMQR 8 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 QQNIS(1)MQR;QQNIS(1)MQR ; 98.254 0.0025399 515140000 278650 418180 473990 71996 529980 288070 276190 319970 345570 219110 TRUE FALSE FALSE 259118.074 385041.8938 657531.6219 167610.3265 463504.9665 252530.8523 207084.3408 247119.8159 375524.2858 164243.4298 1.577646511 2.344336661 4.003396803 1.02049943 2.822060931 1.537540056 1.260837898 1.504594833 2.28638848 1 17.32547613 -6.286144593 21.44288462 1.533343889 2.370669487 0.2181393 0.790488884 211.7101233 183751.5061 0.275686812 0.243365421 5.17E-07 6.286144593 0.837325598 QQPPEPEWIGDGES(ph)TSPSDKVVK ddPTM_HeLa_A486_30min_R1 3 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.33)T(0.33)S(0.33)PS(0.011)DKVVK;QQPPEPEWIGDGES(0.327)T(0.327)S(0.327)PS(0.02)DKVVK;QQPPEPEWIGDGES(0.509)T(0.243)S(0.243)PS(0.006)DKVVK ;; 159.59 2.27E-11 3057640000 936693 779526 343530 371381 781262 937118 1334368 944729 633459 1305494 TRUE FALSE FALSE 871035.6578 717753.5208 476554.0161 864593.7366 683268.835 821505.9091 1000495.013 729634.83 688367.7362 978589.8051 0.890092716 0.733456978 0.486980361 0.883509855 0.698217814 0.839479325 1.022384464 0.745598234 0.703428273 1 19.90034473 -6.333436588 6.224796034 0.857436917 0.732415923 0.164907705 0.138938091 0.474855654 32.86424503 0.050319899 0.044367125 4.64E-07 6.333436588 -0.125020993 QQPPEPEWIGDGES(ph)TSPSDKVVKK ddPTM_HeLa_A485_30min_R1 1 QQPPEPEWIGDGESTSPSDKVVKK 24 2 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.339)T(0.339)S(0.265)PS(0.057)DKVVKK 99.871 0.0005113 740150000 73153 74470 50338 68116 90781 103150 152600 212210 57952 116270 TRUE FALSE FALSE 89425.63248 83178.6187 68960.12094 71837.0046 81742.52489 108550.7745 119995.7634 160165.1648 69582.43483 87286.02879 1.024512556 0.952943098 0.790047639 0.823006907 0.936490364 1.243621413 1.374741926 1.834946176 0.797177232 1 16.41346313 -6.288819454 3.409827411 1.319557189 0.891950934 0.290763341 0.260915522 0.26720156 6.52185727 0.092959636 0.084827371 5.14E-07 6.288819454 -0.427606255 QQPPEPEWIGDGEST(ph)SPSDKVVK ddPTM_HeLa_A485_30min_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.102)T(0.447)S(0.447)PS(0.004)DKVVK 148.66 1.84E-09 1030400000 482250 416260 274860 704850 618830 573510 889880 859050 388590 979500 TRUE FALSE FALSE 589524.8488 464937.986 376542.1519 743354.1707 557217.1124 603538.0968 699749.8683 648366.6406 466576.4486 735328.6764 0.801716114 0.632285944 0.512073259 1.010914159 0.757779657 0.820773235 0.951615095 0.88173719 0.634514148 1 19.48802972 -5.258417278 24.99983287 0.857662734 0.647051195 0.385190895 0.125157343 283.3724433 2344140.984 0.033882677 0.055619737 5.52E-06 5.258417278 -0.210611539 QQPPEPEWIGDGEST(ph)SPSDKVVKK ddPTM_HeLa_A486_30min_R1 1 QQPPEPEWIGDGESTSPSDKVVKK 24 2 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.022)T(0.569)S(0.393)PS(0.016)DKVVKK 126.42 5.19E-06 340520000 273330 172100 87997 106460 203160 213070 298090 279670 119610 365410 TRUE FALSE FALSE 254170.9785 158462.1692 122071.795 247844.2602 177677.7784 186783.5897 223504.7291 215995.2462 129977.8911 273908.9576 0.927939636 0.578521311 0.445665582 0.904841749 0.648674581 0.681918516 0.815981818 0.788565836 0.474529538 1 18.06333692 -10.76824591 2.682390898 1.072596875 0.696002503 0.250535097 0.157585103 150194101.1 116499283.1 71897977.16 0.038810719 1.71E-11 10.76824591 -0.376594372 QQPPEPEWIGDGESTS(ph)PSDKVVK ddPTM_HeLa_A485_30min_R1 2 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.125)T(0.125)S(0.647)PS(0.104)DKVVK;QQPPEPEWIGDGES(0.002)T(0.39)S(0.604)PS(0.004)DKVVK ; 194.25 8.30E-22 4953000000 634700 536800 377440 826540 743870 726790 1178540 1281060 630520 1392360 TRUE FALSE FALSE 775886.8253 599574.0905 517070.7626 871691.7873 669807.6909 764843.6006 926735.3012 966878.0264 757059.5805 1045270.276 0.742283448 0.573606754 0.494676615 0.833939132 0.640798563 0.731718502 0.886598732 0.92500289 0.724271605 1 19.9954446 -6.613228548 0.5065352 0.946036826 0.598448861 0.501060305 0.106619257 0.805359208 0.443033001 0.101959188 0.100247214 2.44E-07 6.613228548 -0.347587965 QQPPEPEWIGDGESTS(ph)PSDKVVK ddPTM_HeLa_A486_30min_R1 2 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.04)T(0.304)S(0.647)PS(0.009)DKVVK;QQPPEPEWIGDGES(0.007)T(0.276)S(0.687)PS(0.029)DKVVK ; 171.87 6.18E-15 3254100000 1451400 1203570 615250 730980 1158440 1374070 1966560 1762580 1193050 1970380 TRUE FALSE FALSE 1349664.355 1108194.73 853491.277 1701758.382 1013137.653 1204551.214 1474505.888 1361279.011 1296464.535 1476984.023 0.913797532 0.75030922 0.577860873 1.152184692 0.685950313 0.815547897 0.998322165 0.921661297 0.877778307 1 20.49422279 -6.774991359 0.465279789 0.9827872 0.781988113 0.131457523 0.148572807 2.142613932 1.032881841 0.150725599 0.146184295 1.68E-07 6.774991359 -0.200799087 QQPPLGPS(ph)SSLLS(ph)LPGLK ddPTM_HeLa_A486_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 QQPPLGPS(0.356)S(0.288)S(0.356)LLS(0.999)LPGLK 119.38 8.41E-05 61278000 58724 77937 59240 52913 93175 101160 132030 115760 70284 108590 TRUE FALSE FALSE 54607.75085 71760.98828 82179.3145 123184.1381 81488.12268 88679.90772 98994.69753 89403.97502 76376.27371 81398.3572 0.670870429 0.881602415 1.009594264 1.513349192 1.001102792 1.089455743 1.21617562 1.098351098 0.938302397 1 16.31271206 -4.624688118 2.388469781 1.12930451 0.691656435 0.458009027 0.153835757 0.279639183 2.938694249 0.041825349 0.183301025 2.37E-05 4.624688118 -0.437648075 QQPPLGPSS(ph)SLLS(ph)LPGLK ddPTM_HeLa_A485_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 QQPPLGPS(0.127)S(0.645)S(0.229)LLS(1)LPGLK 135.81 9.01E-06 92451000 211470 145500 117930 206580 241750 187460 401170 330200 146760 310170 TRUE FALSE FALSE 258510.7719 162514.9593 161557.2145 217864.9423 217680.5212 197275.1157 315456.7522 249217.9323 176213.3858 232850.3273 1.110201454 0.697937431 0.693824296 0.935643702 0.934851687 0.847218546 1.354761902 1.070292386 0.756766752 1 17.82904338 QQPPLGPSS(ph)SLLSLPGLK ddPTM_HeLa_A485_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 QQPPLGPS(0.002)S(0.797)S(0.201)LLSLPGLK 298.33 9.48E-79 444130000 459120 443740 344340 406140 469420 469720 558900 554360 398890 623550 TRUE FALSE FALSE 561249.6601 495631.533 471725.6952 428326.3998 422682.8966 494313.8129 439486.4492 418402.3408 478943.5642 468110.4606 1.198968422 1.058791834 1.007723037 0.915011383 0.902955461 1.055976857 0.938852015 0.893811132 1.023142195 1 18.83648948 -4.363496754 1.54919368 0.958349095 1.259135638 0.668477775 0.05099052 0.510863561 1.355760581 0.014576889 0.220655338 4.33E-05 4.363496754 0.300786543 QQPPLGPSS(ph)SLLSLPGLK ddPTM_HeLa_A486_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 QQPPLGPS(0.002)S(0.499)S(0.499)LLSLPGLK 218.36 2.56E-34 442450000 142540 138240 88049 33748 140110 134210 156820 128840 132910 178430 TRUE FALSE FALSE 132548.6821 127285.3589 122143.9308 78567.04953 122536.0973 117652.5347 117581.9773 99505.94456 144430.7458 133749.9666 0.991018431 0.951666473 0.913225879 0.587417339 0.916157966 0.879645339 0.879117807 0.743969865 1.079856313 1 17.02917901 -7.776183967 24.99961164 1.039928276 0.857129597 0.30108309 0.111006045 348.6492907 591121.3954 0.108142246 0.028400947 1.67E-08 7.776183967 -0.182798679 QQPPLGPSSS(ph)LLS(ph)LPGLK ddPTM_HeLa_A485_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 QQPPLGPS(0.059)S(0.413)S(0.528)LLS(1)LPGLK 153.11 4.79E-08 113200000 107740 79668 56724 99943 115730 87331 184690 156350 64103 136740 TRUE FALSE FALSE 131706.3913 88984.47958 77708.56808 105402.633 104207.5148 91903.51612 145229.4727 118004.9174 76967.88411 102653.2345 1.283022322 0.866845356 0.757000678 1.02678336 1.015141075 0.89528125 1.414757883 1.149548944 0.749785279 1 16.64741956 QQPPLGPSSS(ph)LLS(ph)LPGLK ddPTM_HeLa_A486_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 QQPPLGPS(0.119)S(0.384)S(0.497)LLS(1)LPGLK 122.94 2.94E-05 107250000 189960 238840 157650 144610 282340 297380 385590 344400 197420 354130 TRUE FALSE FALSE 176644.785 219913.4486 218696.302 336659.3882 246926.2845 260692.2791 289111.3036 265987.6382 214532.5246 265453.543 0.665445196 0.828444202 0.823859043 1.268242211 0.930205269 0.982063664 1.089122038 1.00201201 0.808173521 1 18.01809987 -5.021334976 24.36273485 1.012883109 0.766746324 0.476457404 0.116217394 455.0573241 519638.3705 0.031157566 0.054729241 9.52E-06 5.021334976 -0.246136785 QQPPLGPSSS(ph)LLSLPGLK ddPTM_HeLa_A486_30min_R1 1 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 QQPPLGPSS(0.206)S(0.794)LLSLPGLK 328.58 1.93E-101 594070000 293630 262930 194040 108240 327090 239250 298260 278590 243630 300770 TRUE FALSE FALSE 273048.0533 242094.4692 269177.4846 251988.1901 286063.3222 209733.7675 223632.1933 215161.1386 264748.0446 225455.2343 1.211096536 1.073802833 1.193928743 1.117686138 1.268825375 0.930267901 0.991913956 0.954340844 1.174282094 1 17.78248148 -6.267444473 24.99959646 1.006166824 1.165635366 0.518839822 0.078229321 409.33227 1704071.258 0.026406546 0.02388494 5.40E-07 6.267444473 0.159468542 QQQDQVDR ddPTM_HeLa_A485_30min_R1 1 QQQDQVDR 8 0 Q15233-2;Q15233;H7C367;C9JYS8 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 99.136 0.02467 9038800 4319.3 6211.6 4114.8 5300.1 3783 5411.2 5033.5 7864.4 4836.9 7496.8 FALSE FALSE TRUE 5280.113384 6937.992586 5637.035751 5589.631042 3406.351237 5694.522065 3958.051605 5935.643569 5807.621463 5627.985728 0.938188837 1.232766556 1.001608039 0.993185007 0.605252288 1.011822407 0.70328032 1.054665711 1.0319183 1 12.45840295 -5.275846512 3.046814107 0.895219005 1.083540064 0.158498291 0.155624178 0.406051298 7.677018025 0.04454419 0.076882117 5.30E-06 5.275846512 0.188321059 QQQEK(ac)EMK ddPTM_HeLa_A486_30min_R1 1 QQQEKEMK 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 1 QQQEK(1)EMK 156.92 7.14E-06 0 11732 11558 5999.5 5075.2 13047 13352 15293 16133 8406.6 17308 FALSE TRUE FALSE 10909.64738 10642.10199 8322.667072 11815.32209 11410.5236 11704.76599 11466.52965 12459.86808 9135.290857 12973.96414 0.84088774 0.820266024 0.641489909 0.910694831 0.879493999 0.90217345 0.883810801 0.960374789 0.704124873 1 13.66333174 QQQLEEEAAKPPEPEKPVS(ph)PPPIESK ddPTM_HeLa_A485_30min_R1 1 QQQLEEEAAKPPEPEKPVSPPPIESK 26 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330;H0YGK8;H7C1Y3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 QQQLEEEAAKPPEPEKPVS(0.997)PPPIES(0.003)K 121.39 2.67E-05 840410000 453050 200360 109940 1195900 394460 362790 800230 625480 267390 1477000 TRUE FALSE FALSE 553829.4095 223790.3591 150611.381 1261228.989 355186.1774 381785.1234 629254.3232 472080.0493 321052.7204 1108811.082 0.499480406 0.201829115 0.135831417 1.137460663 0.320330652 0.344319361 0.567503638 0.425753365 0.289546818 1 20.08058215 -10.48202435 2.917933625 1.017261559 0.438211602 0.289887659 0.26489585 56337634.95 63728881.29 7864475.465 0.068481985 3.30E-11 10.48202435 -0.579049957 QQQLEEEAAKPPEPEKPVS(ph)PPPIESK ddPTM_HeLa_A486_30min_R1 1 QQQLEEEAAKPPEPEKPVSPPPIESK 26 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330;H0YGK8;H7C1Y3 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 QQQLEEEAAKPPEPEKPVS(1)PPPIESK 181.9 1.84E-20 1348000000 484560 401980 93733 404700 287100 637750 917120 754860 280980 1162200 TRUE FALSE FALSE 450594.8463 370125.6408 130028.9279 942162.0524 251089.2409 559070.8892 687646.8757 582994.8565 305335.5726 871177.5553 0.51722504 0.424856722 0.149256517 1.08148109 0.288218216 0.641741613 0.78933034 0.669203256 0.350486041 1 19.73260726 -14 0.117048419 2.335651342 0.33931741 0.216971765 0.255483997 248.7820188 1.899296 80.4370255 2.626097517 1.00E-14 14 -1.996333932 QQQLEEEAAKPPEPEKPVS(ph)PPPVEQK ddPTM_HeLa_A485_30min_R1 2 QQQLEEEAAKPPEPEKPVSPPPVEQK 26 2 O75376-2;O75376;A0A088AWL3;O75376-3;E7EVU5;E7EW50;J3KS51 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 QQQLEEEAAKPPEPEKPVS(1)PPPVEQK;QQQLEEEAAKPPEPEKPVS(1)PPPVEQK ; 142.64 3.22E-09 1393700000 403740 247540 120768 1202100 438160 387440 795720 617720 282210 1616380 TRUE FALSE FALSE 493550.5701 276487.6497 165445.1088 1267767.679 394535.2519 407725.7593 625707.9216 466223.2015 338846.9584 1213446.213 0.406734608 0.227853239 0.136343174 1.044766274 0.325136168 0.336006454 0.51564537 0.384214147 0.279243492 1 20.21067873 -10.04376378 4.442348992 1.000030181 0.409935106 0.364679423 0.235074464 638281694.7 1314930635 314027.8234 0.059185594 9.04E-11 10.04376378 -0.590095075 QQQLEEEAAKPPEPEKPVS(ph)PPPVEQK ddPTM_HeLa_A486_30min_R1 2 QQQLEEEAAKPPEPEKPVSPPPVEQK 26 2 O75376-2;O75376;A0A088AWL3;O75376-3;E7EVU5;E7EW50;J3KS51 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 QQQLEEEAAKPPEPEKPVS(1)PPPVEQK;QQQLEEEAAKPPEPEKPVS(1)PPPVEQK ; 181.18 1.93E-20 1332140000 1324100 1166490 363420 1332130 909160 2070290 2878600 2532160 1027570 3866400 TRUE FALSE FALSE 1231287.428 1074053.084 504145.9567 3101265.962 795124.6752 1814878.669 2158343.833 1955642.445 1116640.595 2898228.274 0.424841424 0.37058954 0.173949706 1.070055796 0.274348533 0.626202803 0.744711468 0.674771709 0.385283866 1 21.4667398 -14 0.070702199 2.489592323 5.03E-16 0.271475628 0.244212361 420.4487467 2.13349966 103.352517 12.59100972 1.00E-14 14 -2.489592323 QQQQMEQER ddPTM_HeLa_A485_30min_R1 1 QQQQMEQER 9 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 134.66 0.00011784 0 66727 105520 97823 75172 106950 91045 98184 111720 88078 102640 FALSE FALSE TRUE 81570.19094 117859.6461 134011.7985 79278.45601 96301.68248 95811.97542 77206.18631 84320.49483 105754.4467 77053.73695 1.058614341 1.529577289 1.73919921 1.028872306 1.249798988 1.243443592 1.001978481 1.094307663 1.372476545 1 16.23357731 -5.283275345 24.96870106 1.148423391 1.451175048 0.336748724 0.193238475 870.5101638 995397.5587 0.054599751 0.081062096 5.21E-06 5.283275345 0.302751657 QQQQQQGEDGS(ph)PQAHR ddPTM_HeLa_A485_30min_R1 1 QQQQQQGEDGSPQAHR 16 0 A0A087WUX9;E9PEG3;A0A087WZ66;F5GZG9;P10275-3;P10275-4;P10275 A0A087WUX9 AR Androgen receptor 1 0 QQQQQQGEDGS(1)PQAHR 130.05 2.56E-07 0 209730 296900 282170 240920 343280 266410 334940 356110 239730 296270 TRUE FALSE FALSE 256383.7149 331619.8723 386556.4251 254080.8496 309101.8379 280358.8157 263377.3328 268773.4641 287841.6121 222415.3414 1.152724957 1.490993697 1.737993533 1.142371061 1.389750526 1.260519233 1.184168912 1.208430418 1.29416258 1 17.76289678 -6.159472771 0.960662232 1.176349703 1.432304302 0.257713559 0.171096155 0.795138167 1.575658168 0.097411772 0.098798596 6.93E-07 6.159472771 0.255954599 QQQQQQGEDGS(ph)PQAHR ddPTM_HeLa_A486_30min_R1 1 QQQQQQGEDGSPQAHR 16 0 A0A087WUX9;E9PEG3;A0A087WZ66;F5GZG9;P10275-3;P10275-4;P10275 A0A087WUX9 AR Androgen receptor 1 0 QQQQQQGEDGS(1)PQAHR 214.18 2.39E-26 651730000 209710 245630 190830 81893 251140 200130 221260 229350 193100 231640 TRUE FALSE FALSE 195010.4119 226165.3842 264724.4866 190651.0426 219639.6794 175439.9954 165898.4078 177132.0117 209838.0635 173635.8363 1.123100024 1.302527111 1.524595915 1.097993633 1.264944404 1.010390477 0.955438758 1.020135103 1.208495135 1 17.40570521 -6.007954813 1.750393778 1.03600788 1.295307508 0.420191687 0.127495437 0.344367559 2.133513356 0.049727664 0.054578022 9.82E-07 6.007954813 0.259299628 QQS(ph)FCAKPPPSPLSPVPSVVK ddPTM_HeLa_A485_30min_R1 1 QQSFCAKPPPSPLSPVPSVVK 21 1 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 QQS(1)FCAKPPPSPLSPVPSVVK 106.88 5.22E-05 298090000 177810 158910 83283 199390 153930 128290 192050 188600 93658 190660 TRUE FALSE FALSE 217363.2211 177493.1422 114092.8474 210282.1708 138604.1887 135007.066 151016.9486 142345.5543 112454.3015 143131.9708 1.518621031 1.240066361 0.797116442 1.469148853 0.968366382 0.943234871 1.055088865 0.994505654 0.785668645 1 17.12698643 -1 0.600973325 0.980561179 34.13440629 0.435180905 0.181232533 168.5938992 1.30333343 0.081355313 7340.920246 0.1 1 33.15384511 QQS(ph)LFS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 QQSLFSSPR 9 0 Q5T7B8-4;Q5T7B8-2;Q5T7B8 Q5T7B8-4 KIF24 Kinesin-like protein KIF24 2 0 QQS(0.904)LFS(0.969)S(0.128)PR 68.525 0.033177 684400000 97630 123030 106680 55147 155200 109780 134770 141410 130320 65362 TRUE FALSE FALSE 119347.4567 137417.2883 146145.3713 58159.54097 139747.7431 115527.911 105975.2885 106728.9758 156474.0286 49068.4563 2.432264344 2.800521937 2.978397577 1.185273501 2.848015886 2.354423183 2.159743683 2.175103597 3.188892426 1 15.58250826 -10.47724541 3.422938324 0.976822875 2.437334934 0.398807342 0.53651945 92192772.74 130807446.7 20601099.54 0.131120277 3.33E-11 10.47724541 1.460512059 QQS(ph)LPLRPIIPLVAR ddPTM_HeLa_A485_30min_R1 2 QQSLPLRPIIPLVAR 15 1 Q9NU19 Q9NU19 TBC1D22B TBC1 domain family member 22B 1 0 QQS(1)LPLRPIIPLVAR;QQS(1)LPLRPIIPLVAR ; 116.82 6.92E-05 175586000 73160 119734 117362 106111 140489 133716 169902 215263 142469 167531 TRUE FALSE FALSE 89434.1896 133735.8498 160779.0876 111907.5752 126501.4219 140717.163 133601.0497 162469.4117 171061.2215 125768.6049 0.711101071 1.06334844 1.278372196 0.88978943 1.005826708 1.118857629 1.06227663 1.291812149 1.360126573 1 16.94041231 -6.966403675 1.936870262 1.239531306 1.013543779 0.231189241 0.163784938 0.499154155 3.723059699 0.096498568 0.051291678 1.08E-07 6.966403675 -0.225987527 QQS(ph)LPLRPIIPLVAR ddPTM_HeLa_A486_30min_R1 2 QQSLPLRPIIPLVAR 15 1 Q9NU19 Q9NU19 TBC1D22B TBC1 domain family member 22B 1 0 QQS(1)LPLRPIIPLVAR;QQS(1)LPLRPIIPLVAR ; 104.88 0.00015567 208340000 221470 214723 153665 69793 206823 191413 233490 252220 167434 250300 TRUE FALSE FALSE 205946.0967 197707.5675 213168.2033 162481.6311 180881.3308 167798.4102 175068.3324 194795.0119 181947.3139 187623.2508 1.09765765 1.053747692 1.13615025 0.865999445 0.964066713 0.894336973 0.933084421 1.038224266 0.969748222 1 17.5174791 -5.251113642 24.99625764 0.951087186 1.091641451 0.636221638 0.049739141 470.5140456 1139005.205 0.013900333 0.023733104 5.61E-06 5.251113642 0.140554265 QQS(ph)PQEPK ddPTM_HeLa_A485_30min_R1 10 QQSPQEPK 8 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK ;;;;;;;;; 192.44 3.86E-06 31400426000 14901275 12025724 8617445 19360689 15889299 12074753 19061630 15651796 11494724 24430360 TRUE FALSE FALSE 18216012.21 13432027.81 11805396.51 20418314.42 14307304.6 12706968.4 14988957.03 11813168.49 13801609.67 18340320.86 0.993222112 0.732376926 0.643685386 1.113301919 0.780101107 0.692843298 0.817267983 0.644109151 0.752528256 1 24.12851554 -5.977799243 24.99828528 0.758586947 0.85732647 0.066265228 0.149811143 618.7282462 696691.1396 0.045989246 0.052143271 1.05E-06 5.977799243 0.098739522 QQS(ph)PQEPK ddPTM_HeLa_A486_30min_R1 6 QQSPQEPK 8 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK ;;;;; 141.1 0.00041399 21434370000 11041140 11024630 6542620 6135840 10268130 12795930 16337350 14353250 8630190 14840260 TRUE FALSE FALSE 10267213.1 10150998.17 9076097.681 14284545.61 8980205.389 11217298.26 12249572.23 11085328.3 9378261.818 11124162.3 0.922965058 0.912517985 0.815890441 1.284100791 0.80727026 1.008372402 1.101168061 0.996509041 0.843053307 1 23.40719336 QQS(ph)PS(ph)PIR ddPTM_HeLa_A486_30min_R1 2 QQSPSPIR 8 0 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;Q8WZ42-6 A0A0A0MRA3 TTN Titin 2 0 QQS(1)PS(1)PIR;QQS(1)PS(1)PIR ; 80.916 0.017646 1152430000 54112 73131 95757 47548 124712 75322 69818 83481 74722 60110 TRUE FALSE FALSE 50319.02823 67335.83322 132836.6749 110694.1469 109069.4581 66029.53746 52348.79794 64474.19868 81198.96312 45058.06475 1.116759641 1.494423553 2.948122064 2.456699984 2.420642313 1.465432167 1.161807508 1.430913623 1.802096108 1 15.45949773 -6.352240988 6.364427447 1.377913924 2.121256148 0.324103438 0.516101403 0.326201493 19.03187746 0.199908911 0.175897754 4.44E-07 6.352240988 0.743342224 QQS(ph)TSSDRVSQTPESLDFLKVPDQGAAGVR ddPTM_HeLa_A486_30min_R1 1 QQSTSSDRVSQTPESLDFLKVPDQGAAGVR 30 2 Q12965 Q12965 MYO1E Unconventional myosin-Ie 1 0 QQS(0.283)T(0.238)S(0.238)S(0.238)DRVS(0.003)QT(0.001)PESLDFLKVPDQGAAGVR 58.635 0.0080993 319430000 56267 66179 55172 26156 95022 66045 97758 84835 56903 71537 TRUE FALSE FALSE 52322.97386 60934.73502 76536.07596 60892.48985 83103.45472 57897.0394 73297.91442 65519.92244 61835.39786 53623.66957 0.975744 1.136340267 1.427281582 1.135552459 1.549753222 1.079691857 1.366894787 1.221847049 1.153136261 1 15.71058233 -9.895643276 9.323959032 0.999993156 1.236943697 0.144031837 0.164794371 1.16E-10 0 0.153864936 0.037317729 1.27E-10 9.895643276 0.236950541 QQSETSTHS(ph)I ddPTM_HeLa_A486_30min_R1 1 QQSETSTHSI 10 0 Q14644-2;Q14644 Q14644-2 RASA3 Ras GTPase-activating protein 3 1 0 QQSETST(0.011)HS(0.989)I 57.164 0.03552 404750000 661540 691120 696650 88731 860020 516100 551270 593940 677550 418940 TRUE FALSE FALSE 615169.4622 636353.1342 966411.5369 206570.2522 752148.2722 452428.8293 413336.4153 458712.8276 736280.5795 314034.6972 1.958921953 2.026378422 3.077403694 0.657794359 2.395112002 1.440696947 1.316212568 1.460707469 2.344583532 1 18.26056444 -5.254638232 24.99403079 1.560752067 2.321448972 0.305355526 0.575717489 717.329969 2636161.518 0.15138279 0.254937147 5.56E-06 5.254638232 0.760696905 QQSHFAMMHGGTGFAGIDS(ph)SSPEVK ddPTM_HeLa_A486_30min_R1 1 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGTGFAGIDS(0.466)S(0.069)S(0.466)PEVK 192.24 5.36E-21 597200000 262690 220450 125900 75130 261510 251870 320520 288760 157020 336710 TRUE FALSE FALSE 244276.7875 202980.7391 174651.8517 174906.4369 228708.9773 220796.8402 240322.5059 223015.6516 170630.62 252395.6244 0.967832894 0.804216553 0.691976543 0.692985218 0.906152703 0.874804548 0.952165896 0.883595554 0.676044287 1 17.94532737 -5.789160444 24.99813834 0.879442768 0.783373252 0.153766657 0.106268062 421.037105 379678.2491 0.033997099 0.038557545 1.62E-06 5.789160444 -0.096069516 QQSHFAMMHGGTGFAGIDSS(ph)SPEVK ddPTM_HeLa_A485_30min_R1 2 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGTGFAGIDS(0.012)S(0.571)S(0.417)PEVK;QQSHFAMMHGGTGFAGIDS(0.012)S(0.571)S(0.417)PEVK ; 127.83 1.10E-05 1595300000 704950 685110 585000 833260 930360 746990 1069610 1137410 533760 1109790 TRUE FALSE FALSE 861763.6955 765227.6548 801415.8439 878778.8839 837730.0917 786101.2413 841079.0856 858458.4141 640880.7361 833139.7772 1.034356682 0.91848652 0.961922436 1.054779652 1.005509657 0.943540643 1.009529383 1.030389423 0.769235552 1 19.66819903 -7.730065028 24.99991178 0.884617081 0.992310394 0.310819771 0.065550805 196.3252522 156437.6925 0.04182193 0.015803912 1.86E-08 7.730065028 0.107693313 QQSHFAMMHGGTGFAGIDSS(ph)SPEVK ddPTM_HeLa_A486_30min_R1 4 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGTGFAGIDS(0.069)S(0.465)S(0.465)PEVK;QQSHFAMMHGGTGFAGIDS(0.104)S(0.507)S(0.389)PEVK;QQSHFAMMHGGTGFAGIDS(0.016)S(0.537)S(0.447)PEVK;QQSHFAMMHGGTGFAGIDS(0.105)S(0.503)S(0.392)PEVK ;;; 142.21 4.24E-09 2255110000 502774 433522 265200 150084 499474 501292 611387 566489 380352 685687 TRUE FALSE FALSE 467532.1389 399168.1379 367892.5423 349403.1368 436825.3135 439447.6898 458411.506 437511.8211 413321.2176 513986.5121 0.90961947 0.776612087 0.715763028 0.679790478 0.849876997 0.85497903 0.891874583 0.85121265 0.804147984 1 18.97137098 -5.97354436 23.54040979 0.869699236 0.766712236 0.333818218 0.072799134 143.5667388 127745.1576 0.022903431 0.025968977 1.06E-06 5.97354436 -0.102986999 QQSHFAMMHGGTGFAGIDSSS(ph)PEVK ddPTM_HeLa_A485_30min_R1 9 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGTGFAGIDS(0.001)S(0.207)S(0.791)PEVK;QQSHFAMMHGGTGFAGIDS(0.036)S(0.201)S(0.764)PEVK;QQSHFAMMHGGTGFAGIDS(0.004)S(0.107)S(0.889)PEVK;QQSHFAMMHGGTGFAGIDS(0.228)S(0.169)S(0.603)PEVK;QQSHFAMMHGGTGFAGIDS(0.303)S(0.155)S(0.542)PEVK;QQSHFAMMHGGT(0.001)GFAGIDS(0.009)S(0.071)S(0.919)PEVK;QQSHFAMMHGGTGFAGIDS(0.002)S(0.237)S(0.761)PEVK;QQSHFAMMHGGTGFAGIDS(0.181)S(0.181)S(0.638)PEVK;QQSHFAMMHGGTGFAGIDSS(0.01)S(0.99)PEVK ;;;;;;;; 307.33 6.21E-91 11348866000 2074235 2052659 1436406 2275291 2382879 2007450 3003510 3100550 1411030 3036620 TRUE FALSE FALSE 2535641.42 2292699.614 1967792.353 2399584.386 2145631.2 2112556.978 2361785.552 2340135.251 1694210.778 2279646.519 1.112295875 1.00572593 0.863200648 1.052612485 0.941212237 0.92670375 1.036031478 1.026534259 0.743190124 1 21.12037871 -4.364684216 3.667397616 0.954457157 1.11534003 0.238579516 0.088279638 0.346072411 7.522432442 0.021550092 0.121896164 4.32E-05 4.364684216 0.160882873 QQSHFAMMHGGTGFAGIDSSS(ph)PEVK ddPTM_HeLa_A486_30min_R1 8 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGTGFAGIDS(0.086)S(0.086)S(0.828)PEVK;QQSHFAMMHGGTGFAGIDSS(0.011)S(0.989)PEVK;QQSHFAMMHGGTGFAGIDS(0.061)S(0.468)S(0.471)PEVK;QQSHFAMMHGGTGFAGIDS(0.003)S(0.048)S(0.949)PEVK;QQSHFAMMHGGTGFAGIDS(0.002)S(0.084)S(0.914)PEVK;QQSHFAMMHGGTGFAGIDS(0.002)S(0.066)S(0.931)PEVK;QQSHFAMMHGGTGFAGIDSS(0.017)S(0.982)PEVK;QQSHFAMMHGGTGFAGIDSS(0.151)S(0.848)PEVK ;;;;;;; 244.57 2.13E-49 12693260000 4862192 4094035 2420622.9 1218383.9 4202791 4678557 5735506 5299049 3257175 6267833 TRUE FALSE FALSE 4521377.449 3769608.756 3357952.913 2836459.293 3675637.763 4101364.205 4300421.735 4092571.22 3539509.552 4698326.82 0.96233779 0.802330042 0.714712501 0.603716898 0.782329094 0.872941445 0.915309194 0.871069931 0.75335533 1 22.16371564 -6.228346348 4.96369885 0.876946761 0.760955866 0.224658086 0.100620729 0.325030826 21.16328533 0.036125038 0.035123236 5.91E-07 6.228346348 -0.115990895 QQSSSSKGDS(ph)PELKPR ddPTM_HeLa_A485_30min_R1 4 QQSSSSKGDSPELKPR 16 2 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 QQS(0.005)S(0.005)S(0.027)S(0.027)KGDS(0.936)PELKPR;QQS(0.185)S(0.185)S(0.185)S(0.185)KGDS(0.258)PELKPR;QQSSS(0.002)S(0.002)KGDS(0.995)PELKPR;QQS(0.002)S(0.002)S(0.009)S(0.046)KGDS(0.941)PELKPR ;;; 125.23 1.03E-05 2015140000 1739760 1437850 980971 2626110 1965520 1926640 3006250 2931870 1417680 3740140 TRUE FALSE FALSE 2126763.61 1605994.05 1343872.995 2769567.74 1769825.927 2027515.891 2363940.129 2212824.286 1702195.372 2807791.93 0.757450574 0.571977586 0.478622714 0.986386388 0.630326595 0.722103326 0.841921406 0.788101234 0.606239855 1 21.4210046 -14 0.138009266 1.942606 0.608541239 0.276143229 0.139300807 188.0785113 1.597773607 49.30131915 0.900563706 1.00E-14 14 -1.334064761 QQSSSSKGDS(ph)PELKPR ddPTM_HeLa_A486_30min_R1 4 QQSSSSKGDSPELKPR 16 2 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 QQS(0.009)S(0.012)S(0.007)S(0.029)KGDS(0.943)PELKPR;QQS(0.021)S(0.227)S(0.16)S(0.16)KGDS(0.433)PELKPR;QQS(0.05)S(0.023)S(0.088)S(0.337)KGDS(0.501)PELKPR;QQS(0.004)S(0.003)S(0.008)S(0.005)KGDS(0.981)PELKPR ;;; 168.3 2.04E-12 1862570000 2710150 2352290 1077960 1735010 2215430 3203350 4392450 3900080 1893810 4895000 TRUE FALSE FALSE 2520182.48 2165885.974 1495374.981 4039190.963 1937550.111 2808153.246 3293412.551 3012116.922 2057966.976 3669260.139 0.686836688 0.590278664 0.407541282 1.100818914 0.528049263 0.765318658 0.897568563 0.820905798 0.560867013 1 21.80705776 -14 0.041336219 2.236708426 1.12E-09 0.185026089 0.189882965 1343.331053 4.133437403 205.3599796 59.23963283 1.00E-14 14 -2.236708425 QQSSSSRES(ph)PVPK ddPTM_HeLa_A485_30min_R1 6 QQSSSSRESPVPK 13 1 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 QQSSSSRES(1)PVPK;QQSSSSRES(1)PVPK;QQSSSSRES(1)PVPK;QQSSSSRES(1)PVPK;QQSSSSRES(1)PVPK;QQSSSSRES(1)PVPK ;;;;; 126.63 1.36E-05 4023170000 3627130 3361560 2805730 4601240 5096400 4105520 5986670 6044110 3654850 6808450 TRUE FALSE FALSE 4433972.555 3754665.2 3843686.283 4852594.09 4588984.521 4320478.679 4707569.048 4561782.546 4388344.871 5111228.715 0.867496409 0.734591506 0.752008274 0.949398738 0.897824139 0.845291596 0.921024926 0.892502136 0.858569459 1 22.28523872 -1 0.067721082 1.138657286 0.249806824 0.416289034 0.059208627 270.5363944 1.359681656 3.224937695 23.0749144 0.1 1 -0.888850462 QQSSSSRES(ph)PVPK ddPTM_HeLa_A486_30min_R1 5 QQSSSSRESPVPK 13 1 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 QQSSSSRES(1)PVPK;QQSSSS(0.001)RES(0.998)PVPK;QQS(0.097)S(0.071)S(0.071)S(0.054)RES(0.707)PVPK;QQSSSSRES(1)PVPK;QQSSSSRES(1)PVPK ;;;; 153.75 1.89E-08 3438110000 3745530 3792680 2375610 1956000 4018360 4309550 5359860 5161830 3105740 4916030 TRUE FALSE FALSE 3482987.689 3492134.224 3295509.813 4553666.851 3514339.819 3777881.537 4018766.337 3986593.991 3374948.044 3685024.09 0.945173655 0.947655738 0.894298038 1.23572241 0.95368164 1.0251986 1.090567182 1.081836616 0.915855083 1 21.81324262 QQSTSSDRVS(ph)QTPESLDFLKVPDQGAAGVR ddPTM_HeLa_A485_30min_R1 2 QQSTSSDRVSQTPESLDFLKVPDQGAAGVR 30 2 Q12965 Q12965 MYO1E Unconventional myosin-Ie 1 0 QQST(0.004)S(0.004)S(0.024)DRVS(0.966)QT(0.002)PESLDFLKVPDQGAAGVR;QQST(0.001)S(0.001)S(0.001)DRVS(0.978)QT(0.017)PESLDFLKVPDQGAAGVR ; 181.32 5.49E-21 463120000 222195 231278 180573 218202 261777 238379 281032 311790 187579 311750 TRUE FALSE FALSE 271621.5112 258323.9502 247374.467 230121.8227 235713.5627 250860.1558 220987.2174 235323.0136 225224.3847 234036.4623 1.160594843 1.103776513 1.056991139 0.983273377 1.007165979 1.071884925 0.944242684 1.005497226 0.962347416 1 17.83637379 -4.647636667 1.212522918 0.995885432 1.184431576 0.745115267 0.032372351 0.412857174 0.829109391 0.010369797 0.083379084 2.25E-05 4.647636667 0.188546144 QQSTSSDRVS(ph)QTPESLDFLKVPDQGAAGVRR ddPTM_HeLa_A485_30min_R1 1 QQSTSSDRVSQTPESLDFLKVPDQGAAGVRR 31 3 Q12965 Q12965 MYO1E Unconventional myosin-Ie 1 0 QQS(0.145)T(0.033)S(0.033)S(0.145)DRVS(0.644)QT(0.001)PESLDFLKVPDQGAAGVRR 197.26 6.48E-29 195660000 32939 69970 37643 24553 57802 75019 87651 155570 32955 35924 TRUE FALSE FALSE 40266.16691 78152.38284 51568.71216 25894.26822 52047.02992 78946.87884 68923.64781 117416.2136 39568.76622 26968.80793 1.493064395 2.897880508 1.912161349 0.960156203 1.929897312 2.92734032 2.555680176 4.353778405 1.467204866 1 14.71900413 -6.207698513 7.45256304 2.675754336 1.849777955 0.074284963 0.958565269 0.558738914 68.81143242 0.309729772 0.30877897 6.20E-07 6.207698513 -0.825976381 QQSVAHQQSGS(ph)ELALRR ddPTM_HeLa_A486_30min_R1 1 QQSVAHQQSGSELALRR 17 1 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 QQSVAHQQS(0.229)GS(0.771)ELALRR 60.602 0.0077254 0 57571 50002 51563 10947 75632 50303 47567 54437 47434 31344 TRUE FALSE FALSE 53535.5702 46039.65942 71529.57451 25485.16923 66145.52932 44097.1273 35665.23349 42042.88345 51545.61731 23495.25838 2.278569119 1.959529819 3.044425958 1.084694146 2.815271415 1.876852196 1.517975793 1.789419923 2.193873184 1 14.52008201 -10.31663578 0.169767962 2.06E-13 2.458810147 0.285945897 0.533275748 36.05046229 1.15217458 18.84009763 2.3962795 4.82E-11 10.31663578 2.458810147 QQTEKPES(ph)EDEWER ddPTM_HeLa_A485_30min_R1 2 QQTEKPESEDEWER 14 1 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 0 QQT(0.013)EKPES(0.987)EDEWER;QQTEKPES(1)EDEWER ; 121.03 9.37E-05 1825560000 1008441 965202 815456 1455670 1226857 1038123 1741070 1615880 949981 2031820 TRUE FALSE FALSE 1232765.221 1078073.978 1117127.108 1535189.566 1104706.809 1092477.515 1369076.171 1219582.896 1140633.473 1525324.667 0.808198574 0.706783284 0.732386444 1.00646741 0.724243719 0.716226216 0.897563778 0.799556267 0.747797172 1 20.54068492 -10.50217335 2.771395503 1.008575871 0.79414399 0.323180711 0.089752357 25968353.97 27534552.09 1694044.128 0.023069054 3.15E-11 10.50217335 -0.214431881 QQTEKPES(ph)EDEWER ddPTM_HeLa_A486_30min_R1 1 QQTEKPESEDEWER 14 1 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 0 QQT(0.13)EKPES(0.87)EDEWER 143.88 5.90E-05 0 275110 229400 112210 143720 235130 262810 375360 308190 199220 381070 TRUE FALSE FALSE 255826.2097 211221.5085 155660.7171 334587.4232 205637.8029 230387.1743 281440.9578 238021.8647 216488.55 285647.5917 0.895600793 0.739447889 0.544939715 1.171329404 0.719900356 0.806543381 0.985273344 0.833271036 0.757886838 1 18.12387684 -14 0.12356665 1.518586128 0.754829634 0.087763349 0.159473104 393.9315096 3.121192027 51.84340342 1.411698656 1.00E-14 14 -0.763756494 QQVAFYGQTLGQAQAHS(ph)QEQ ddPTM_HeLa_A485_30min_R1 2 QQVAFYGQTLGQAQAHSQEQ 20 0 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QQVAFYGQTLGQAQAHS(1)QEQ;QQVAFYGQTLGQAQAHS(1)QEQ ; 380.58 7.84E-143 158420000 283752 420719 399773 290689 410730 390891 475314 509137 317487 407745 TRUE FALSE FALSE 346871.6535 469918.4273 547665.6686 306568.604 369836.279 411357.4483 373759.2809 384270.3525 381203.7287 306101.6755 1.133190966 1.535171039 1.789162597 1.001525403 1.208213834 1.343858859 1.221029844 1.255368341 1.245350023 1 18.22365142 -9.177463398 0.108957592 0.620502052 1.626642842 0.201981374 0.202908333 50.4056683 1.61949432 10.35188379 4.489334995 6.65E-10 9.177463398 1.00614079 QQVAFYGQTLGQAQAHS(ph)QEQ ddPTM_HeLa_A486_30min_R1 1 QQVAFYGQTLGQAQAHSQEQ 20 0 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QQVAFYGQTLGQAQAHS(1)QEQ 265.95 1.31E-58 230700000 160610 157400 124340 54875 176500 164050 159290 169160 146680 182900 TRUE FALSE FALSE 149352.0684 144927.0508 172487.7779 127751.7732 154361.7242 143811.1789 119433.9572 130645.9607 159394.3405 137100.6495 1.089360765 1.057085078 1.258110582 0.931810124 1.125900751 1.048946007 0.87114071 0.952920071 1.162608208 1 17.06487588 -5.828660972 1.202346681 0.999369074 1.112723166 0.145278936 0.101795231 0.867625306 2.652036315 0.043510469 0.059145467 1.48E-06 5.828660972 0.113354093 QQVSS(ph)PVHR ddPTM_HeLa_A486_30min_R1 1 QQVSSPVHR 9 0 Q63HK3;H3BQ35;Q63HK3-2 Q63HK3 ZKSCAN2 Zinc finger protein with KRAB and SCAN domains 2 1 0 QQVS(0.064)S(0.936)PVHR 67.879 0.011956 33529000 29019 36825 41554 5555.5 50403 30665 35589 38203 35438 28265 TRUE FALSE FALSE 26984.91795 33906.85289 57644.82165 12933.48476 44080.98575 26881.86408 26684.25578 29505.01087 38509.79437 21187.26003 1.273638872 1.600341566 2.720730363 0.610436873 2.080542066 1.268774917 1.259448166 1.392582657 1.817592002 1 14.37090941 -5.269725731 24.99900836 1.387061633 1.838447415 0.174360541 0.510261543 1187.133457 3581449.891 0.139352027 0.210645726 5.37E-06 5.269725731 0.451385782 QQVSWEQEFLVGS(ph)SPGGSGR ddPTM_HeLa_A485_30min_R1 1 QQVSWEQEFLVGSSPGGSGR 20 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 QQVSWEQEFLVGS(0.488)S(0.488)PGGS(0.024)GR 59.281 0.020693 67023000 37594 39310 48472 37360 60658 40162 54539 61627 48635 51516 TRUE FALSE FALSE 45956.6556 43906.96255 66403.80989 39400.8822 54618.67654 42264.82022 42886.29711 46512.88162 58395.59839 38674.00928 1.188308543 1.135309304 1.717013858 1.018794868 1.412283793 1.092848169 1.108917795 1.202690967 1.509944262 1 15.23907671 -6.268549562 24.73391911 1.19092578 1.293680507 0.06266175 0.21441387 1720.496749 5985006.913 0.073675087 0.066310058 5.39E-07 6.268549562 0.102754727 QQVSWEQEFLVGS(ph)SPGGSGR ddPTM_HeLa_A486_30min_R1 2 QQVSWEQEFLVGSSPGGSGR 20 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 QQVSWEQEFLVGS(0.607)S(0.392)PGGS(0.002)GR;QQVSWEQEFLVGS(0.543)S(0.396)PGGS(0.06)GR ; 101.92 0.0001389 412670000 144488 146239 142379 71176 186171 148957 171354 185443 129645 168548 TRUE FALSE FALSE 134360.1373 134650.489 197511.9618 165701.325 162819.6972 130580.1998 128479.4168 143221.6771 140882.733 126342.4837 1.06345968 1.065757812 1.563305992 1.311524993 1.288716926 1.033541497 1.016913812 1.133598714 1.115085985 1 16.94698031 -6.259547798 24.88802761 1.065495781 1.267715839 0.344190268 0.136751466 203.9307802 2683184.347 0.049995074 0.047643819 5.50E-07 6.259547798 0.202220058 QQVSWEQEFLVGSS(ph)PGGSGR ddPTM_HeLa_A485_30min_R1 2 QQVSWEQEFLVGSSPGGSGR 20 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 QQVSWEQEFLVGS(0.205)S(0.794)PGGS(0.001)GR;QQVSWEQEFLVGS(0.02)S(0.98)PGGSGR ; 214.52 1.87E-27 564460000 381630 509820 525290 404120 618460 446220 527110 607380 524610 613000 TRUE FALSE FALSE 466522.2769 569439.0142 719616.6301 426196.0523 556883.9509 469583.3892 414488.6424 458419.1027 629894.415 460190.3814 1.013759296 1.237398775 1.563736791 0.926129857 1.21011645 1.020411135 0.900689495 0.996150987 1.368769189 1 18.8118713 -5.297620433 24.99960378 1.058090406 1.268208818 0.224595607 0.179856417 864.9507222 597642.9258 0.051074089 0.075757278 5.04E-06 5.297620433 0.210118412 QQVSWEQEFLVGSS(ph)PGGSGR ddPTM_HeLa_A486_30min_R1 2 QQVSWEQEFLVGSSPGGSGR 20 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 QQVSWEQEFLVGS(0.038)S(0.958)PGGS(0.004)GR;QQVSWEQEFLVGS(0.011)S(0.984)PGGS(0.005)GR ; 241.92 3.16E-46 341220000 325030 339710 316290 147173 400680 349880 358130 376380 310520 349800 TRUE FALSE FALSE 302247.0755 312790.1424 438765.9585 342626.1817 350422.9782 306715.3629 268522.0861 290686.4903 337436.1236 262207.8032 1.152700537 1.192909359 1.673352025 1.306697122 1.336432303 1.169741553 1.024081217 1.108611135 1.286903439 1 18.00035109 -6.331750761 3.524394124 1.112200113 1.343783769 0.346766855 0.148545518 0.299726157 7.317718282 0.057191382 0.050744391 4.66E-07 6.331750761 0.231583656 QQYESVAAK ddPTM_HeLa_A485_30min_R1 2 QQYESVAAK 9 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 185.6 4.16E-08 123732000 108011 117467 99557 121346 145816 137142 175893 191427 116543 162987 FALSE FALSE TRUE 132037.6743 131203.7438 136387.2772 127974.8247 131298.047 144322.5431 138312.0236 144479.2281 139932.1111 122357.3405 1.079115269 1.072299736 1.11466363 1.04591048 1.073070455 1.179516836 1.130394165 1.180797389 1.143634788 1 16.90074113 -6.236301179 24.23270939 1.138388819 1.07711402 0.180738624 0.050159813 693.8950316 668900.2469 0.015497925 0.015491822 5.80E-07 6.236301179 -0.061274799 QRAS(ph)LSSAPVVLVGDHA ddPTM_HeLa_A485_30min_R1 1 QRASLSSAPVVLVGDHA 17 1 Q9HBH9 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 0 QRAS(0.979)LS(0.02)S(0.001)APVVLVGDHA 73.688 0.0030701 154500000 33738 48330 44769 24740 46119 47256 47574 55187 38575 37157 TRUE FALSE FALSE 41242.90171 53981.77308 61330.91609 26091.48356 41527.23043 49730.25109 37409.42626 41652.30172 46316.64867 27894.44372 1.478534654 1.935215974 2.198678586 0.9353649 1.488727678 1.78280132 1.341106732 1.493211413 1.660425608 1 14.76769016 -11.7557723 0.120088755 3.60E-13 1.924694717 0.238303411 0.322813093 122.4046452 1.672706791 37.58956388 3.808522546 1.75E-12 11.7557723 1.924694717 QREEKS(ph)PDDLKK ddPTM_HeLa_A485_30min_R1 1 QREEKSPDDLKK 12 3 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 QREEKS(1)PDDLKK 85.619 0.016239 370040000 206790 111910 54755 527910 214880 209690 436540 419050 120600 724950 TRUE FALSE FALSE 252789.7221 124996.901 75011.15305 556748.3866 193485.7927 220669.0442 343269.6628 316277.3305 144803.3138 544233.3067 0.464487783 0.229675214 0.137829038 1.022995799 0.35551994 0.405467731 0.630739902 0.581142915 0.266068453 1 19.05386573 -14 0.245875885 4.121502327 0.411328679 0.308136088 0.240550701 228.8829775 2.278019931 359.2735268 0.367671058 1.00E-14 14 -3.710173648 QREEKS(ph)PDDLKK ddPTM_HeLa_A486_30min_R1 1 QREEKSPDDLKK 12 3 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 QREEKS(1)PDDLKK 98.062 0.0074918 571210000 619440 472640 161620 650490 375170 820940 1212500 996660 389330 1835700 TRUE FALSE FALSE 576020.4548 435186.2851 224203.5923 1514373.594 328112.6803 719660.7695 909119.6755 769742.2749 423077.4379 1376028.772 0.418610764 0.31626249 0.16293525 1.100539193 0.238448997 0.522998344 0.660683624 0.559394026 0.307462639 1 20.39207921 -14 0.247957281 4.022761286 0.43748468 0.268019036 0.255487533 252.0251424 2.505012315 386.8035696 0.374999118 1.00E-14 14 -3.585276606 QREES(ph)ETRSES(ph)S(ph)DFEVVPK ddPTM_HeLa_A486_30min_R1 1 QREESETRSESSDFEVVPK 19 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 3 0 QREES(0.763)ET(0.217)RS(0.077)ES(0.962)S(0.982)DFEVVPK 93.949 0.00048804 421680000 743600 642340 390440 318350 683280 676320 955820 927760 592000 933500 TRUE FALSE FALSE 691477.48 591438.639 541628.8243 741134.8885 597576.6511 592882.5147 716663.7264 716529.3009 643315.0367 699745.5239 0.988184213 0.84521961 0.774036855 1.059149167 0.853991388 0.84728304 1.02417765 1.023985544 0.919355701 1 19.41647083 -6.766608079 24.9963927 0.993878528 0.892544991 0.260971583 0.080086401 181.1836364 876212.6221 0.032982492 0.022991901 1.71E-07 6.766608079 -0.101333537 QREESET(ph)RS(ph)ES(ph)SDFEVVPK ddPTM_HeLa_A485_30min_R1 1 QREESETRSESSDFEVVPK 19 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 3 0 QREES(0.4)ET(0.688)RS(0.662)ES(0.642)S(0.608)DFEVVPK 65.901 0.011065 371190000 336070 333290 263750 453330 494360 427320 592050 632140 350550 608260 TRUE FALSE FALSE 410827.6121 372265.3663 361322.1006 478094.27 445139.7826 449693.8144 465553.6809 477106.6738 420902.1696 456631.9762 0.899690853 0.815241564 0.791276388 1.047001294 0.974832701 0.984805791 1.019538064 1.04483851 0.921753604 1 18.80067236 -5.260439964 24.9993048 1.000096875 0.833386793 0.756382749 0.042530394 41.15870793 1029528.639 0.011532319 0.018608277 5.49E-06 5.260439964 -0.166710082 QREESET(ph)RS(ph)ES(ph)SDFEVVPK ddPTM_HeLa_A486_30min_R1 1 QREESETRSESSDFEVVPK 19 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 3 0 QREES(0.424)ET(0.656)RS(0.746)ES(0.617)S(0.556)DFEVVPK 96.019 0.00046575 540370000 983320 887150 546640 467330 958720 932030 1236300 1322700 893190 1276000 TRUE FALSE FALSE 914394.3459 816849.0031 758313.6475 1087967.858 838468.3979 817045.6148 926964.6638 1021550.084 970612.4284 956481.2946 0.955998148 0.854014613 0.792815972 1.137469037 0.876617664 0.854220171 0.969140399 1.068029338 1.014774083 1 19.86737723 -7.005554177 6.70327434 1.02910944 0.912217281 0.258980932 0.08803971 0.200987456 47.1843553 0.040199718 0.025135293 9.87E-08 7.005554177 -0.116892159 QREESET(ph)RS(ph)ESS(ph)DFEVVPK ddPTM_HeLa_A485_30min_R1 1 QREESETRSESSDFEVVPK 19 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 3 0 QREES(0.514)ET(0.495)RS(0.785)ES(0.227)S(0.979)DFEVVPK 105.16 8.91E-05 517320000 312420 306010 222290 379850 404940 379850 495550 548130 351370 570810 TRUE FALSE FALSE 381916.7512 341795.2076 304524.3213 400600.2437 364622.7518 399738.3586 389671.6942 413700.2581 421886.736 428517.572 0.891251085 0.797622385 0.710646053 0.93485138 0.850893349 0.932840063 0.909348227 0.965421922 0.984526105 1 18.70899484 -6.398855583 0.652103054 0.993262759 0.805641074 0.583421155 0.054985944 0.55586243 0.506877189 0.045141306 0.041962522 3.99E-07 6.398855583 -0.187621685 QREMEEQMR ddPTM_HeLa_A485_30min_R1 1 QREMEEQMR 9 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 79.986 0.0056111 211590000 47212 48352 62268 32209 82817 53105 82227 82439 65748 51413 FALSE FALSE TRUE 57714.14652 54006.34579 85303.52439 33968.49611 74571.44869 55885.49568 64658.52972 62220.70599 78943.02052 38596.68529 1.495313551 1.399248288 2.210125656 0.880088429 1.932068729 1.447935108 1.675235302 1.612073823 2.045331612 1 15.23618933 QREMLMEDVGS(ph)EEEQEEEDEAPFQEK ddPTM_HeLa_A485_30min_R1 1 QREMLMEDVGSEEEQEEEDEAPFQEK 26 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 QREMLMEDVGS(1)EEEQEEEDEAPFQEK 315.96 2.65E-106 319030000 169280 211060 110320 128050 166070 208160 219470 226670 110640 167930 TRUE FALSE FALSE 206935.752 235741.631 151131.9588 135045.0473 149535.4877 219058.9357 172578.4416 171078.8271 132844.4331 126068.1415 1.641459527 1.869954044 1.198811666 1.071206775 1.186148109 1.737623265 1.368929846 1.357034577 1.053751023 1 16.94384422 -4.764335478 24.99889238 1.272909196 1.755706858 0.484878836 0.208464099 62.46401324 539205.2323 0.056926949 0.127469083 1.72E-05 4.764335478 0.482797662 QRHS(ph)YPER ddPTM_HeLa_A485_30min_R1 2 QRHSYPER 8 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 QRHS(1)YPER;QRHS(1)YPER ; 97.734 0.0012757 367650000 216136 265080 216645 270370 255350 344010 254730 322500 189581 271610 TRUE FALSE FALSE 264214.7075 296078.8001 296791.0009 285139.6285 229926.4574 362021.8317 200304.8545 243406.3693 227628.1678 203902.6256 1.295788648 1.452059772 1.45555262 1.398410774 1.127628723 1.775464296 0.982355445 1.193738279 1.116357217 1 17.63752083 -6.802120719 24.99999984 1.089257416 1.406745028 0.519428749 0.161778415 130.7438586 80345.19202 0.064632299 0.043575647 1.58E-07 6.802120719 0.317487613 QRHS(ph)YPER ddPTM_HeLa_A486_30min_R1 1 QRHSYPER 8 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 QRHS(1)YPER 65.842 0.010695 174320000 115930 106420 82740 46147 104410 110630 115580 114300 93258 119130 TRUE FALSE FALSE 107803.9057 97986.89163 114779.1439 107432.5481 91313.92422 96981.5954 86660.66152 88276.38515 101341.6785 89299.07259 1.207223127 1.097289017 1.285334108 1.203064545 1.022562962 1.086031384 0.970454216 0.988547614 1.13485701 1 16.44635757 -5.760546026 24.99985213 1.032619624 1.197239705 0.62979761 0.061775175 15.85621347 443714.3058 0.018704065 0.022756942 1.74E-06 5.760546026 0.164620081 QRIDEFES(ph)M ddPTM_HeLa_A485_30min_R1 1 QRIDEFESM 9 1 P26038 P26038 MSN Moesin 1 0 QRIDEFES(1)M 115.7 0.0089686 559300000 314380 438040 362760 354040 434660 453790 543360 592300 327000 467390 TRUE FALSE FALSE 384312.7464 489264.9676 496960.0197 373380.3087 391383.7242 477549.7427 427266.6972 447037.4963 392625.9006 350878.2747 1.095287951 1.394400859 1.41633169 1.064130599 1.115440175 1.361012571 1.217706333 1.274052937 1.118980367 1 18.4206111 -7.984169846 3.435467752 1.000680819 1.245895568 0.301557869 0.117930833 0.261573049 7.451116108 0.116794645 0.030991769 1.04E-08 7.984169846 0.245214749 QRIDEFES(ph)M ddPTM_HeLa_A486_30min_R1 1 QRIDEFESM 9 1 P26038 P26038 MSN Moesin 1 0 QRIDEFES(1)M 144.55 0.0014008 456470000 37827 46504 29976 10623 42336 28848 34504 40223 34406 44744 TRUE FALSE FALSE 35175.52264 42818.85368 41583.50999 24730.88086 37025.82411 25289.02706 25870.73425 31065.10096 37388.33978 33539.81117 1.048769251 1.276657566 1.239825406 0.737358977 1.10393657 0.754000282 0.771344064 0.926215738 1.114745089 1 15.03358695 -5.244899804 24.79244622 0.907429115 1.197241456 0.448530459 0.138443179 645.4690074 967541.7082 0.037395588 0.064530509 5.69E-06 5.244899804 0.289812341 QRPDLGS(ph)AQK ddPTM_HeLa_A485_30min_R1 6 QRPDLGSAQK 10 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK ;;;;; 138.31 1.33E-05 14488520000 5170820 5288150 3923210 6269310 6649030 6021440 8523760 8815350 4441370 8260370 TRUE FALSE FALSE 6321051.07 5906553.142 5374568.637 6611786.531 5987029.227 6336713.287 6702589.043 6653371.591 5332712.22 6201211.78 1.019325141 0.9524837 0.866696515 1.066208794 0.965461178 1.021850811 1.080851498 1.072914751 0.859946799 1 22.56411873 -5.276911278 24.96538121 1.014282485 0.946799965 0.145461602 0.069813026 1430.69669 2308562.841 0.019664264 0.029277956 5.29E-06 5.276911278 -0.06748252 QRPDLGS(ph)AQK ddPTM_HeLa_A486_30min_R1 6 QRPDLGSAQK 10 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK ;;;;; 145.61 2.56E-06 5494000000 4622910 4350350 2522360 1945230 4341700 4503000 5835370 5616650 3379160 6268250 TRUE FALSE FALSE 4298867.882 4005612.422 3499085.343 4528593.746 3797123.501 3947465.643 4375298.706 4337861.406 3672068.31 4698639.401 0.9149176 0.852504753 0.744701826 0.963809597 0.808132563 0.840129516 0.931184186 0.923216496 0.781517371 1 22.16381162 -11.23696803 2.307295785 1.482307679 0.863059431 0.273261171 0.067388053 4822347.5 1191302.8 12064310.04 0.016584566 5.79E-12 11.23696803 -0.619248247 QRPLQAYKPGALTFLLSMGR ddPTM_HeLa_A485_30min_R1 1 QRPLQAYKPGALTFLLSMGR 20 2 Q9BRQ8-2;Q9BRQ8 Q9BRQ8-2 AIFM2 Apoptosis-inducing factor 2 0 0 113.73 1.13E-05 8544800 9731.9 10519 7960.2 8802.3 10716 8507.4 11021 10085 6377.8 13344 FALSE FALSE TRUE 11896.72758 11749.10555 10905.00923 9283.14736 9649.077414 8952.834309 8666.273317 7611.637937 7657.765959 10017.58638 1.187584228 1.17284794 1.088586494 0.926685033 0.963213797 0.893711716 0.865105924 0.759827532 0.764432236 1 13.29024733 -5.211873492 0.751532869 0.832007816 1.248047885 0.775281742 0.068370958 0.447447947 0.425862546 0.033348496 0.128071017 6.14E-06 5.211873492 0.416040069 QRPLQAYKPGALTFLLSMGR ddPTM_HeLa_A486_30min_R1 2 QRPLQAYKPGALTFLLSMGR 20 2 Q9BRQ8-2;Q9BRQ8 Q9BRQ8-2 AIFM2 Apoptosis-inducing factor 2 0 0 ; ; 125.28 2.99E-07 26516000 13546.7 16197.1 13322.3 7463.3 17634.2 12334.7 16153.3 16097.7 12538.7 16640.8 FALSE FALSE TRUE 12597.14629 14913.58281 18481.05134 17374.93957 15422.3542 10812.97012 12111.57349 12432.60512 13625.56461 12473.83537 1.009885566 1.195589197 1.481585318 1.392910766 1.236376283 0.866852079 0.97095826 0.996694662 1.092331605 1 13.6066175 -6.149662212 5.84625265 0.985211789 1.283210428 0.545648569 0.126659249 0.191598394 8.677020614 0.045660222 0.045737944 7.08E-07 6.149662212 0.297998639 QRPSSTGPPLPPAS(ph)PSATSR ddPTM_HeLa_A485_30min_R1 1 QRPSSTGPPLPPASPSATSR 20 1 O95155;O95155-4 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 QRPSSTGPPLPPAS(0.786)PS(0.062)AT(0.075)S(0.075)R 50.271 0.018133 101230000 55430 63452 55141 153130 123560 63825 123080 99459 50033 194250 TRUE FALSE FALSE 67760.21227 70872.15944 75539.95051 161495.1042 111257.9326 67166.77831 96782.95253 75066.5243 60074.16417 145827.0499 0.464661476 0.486001462 0.518010551 1.107442716 0.76294441 0.460592039 0.663683127 0.51476406 0.411954875 1 17.15389883 -5.026709709 24.87410724 0.68429155 0.481999853 0.177079471 0.209428902 1291.862284 1203080.666 0.059542376 0.103553254 9.40E-06 5.026709709 -0.202291696 QRPVPQPSSAS(ph)LDEYTLMR ddPTM_HeLa_A485_30min_R1 7 QRPVPQPSSASLDEYTLMR 19 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 QRPVPQPSS(0.009)AS(0.99)LDEYTLMR;QRPVPQPSS(0.001)AS(0.999)LDEYTLMR;QRPVPQPSS(0.001)AS(0.999)LDEYTLMR;QRPVPQPSS(0.012)AS(0.988)LDEYTLMR;QRPVPQPS(0.001)S(0.006)AS(0.993)LDEYTLMR;QRPVPQPSS(0.003)AS(0.997)LDEYTLMR;QRPVPQPSS(0.002)AS(0.998)LDEYTLMR ;;;;;; 282.79 4.59E-70 6850330000 1560020 1961570 1814390 1796050 2181870 1883010 2350020 2513770 1747210 2276200 TRUE FALSE FALSE 1907041.067 2190958.548 2485608.364 1894163.664 1964635.362 1981601.492 1847919.029 1897263.966 2097859.021 1708785.23 1.116021506 1.282173154 1.454605482 1.108485508 1.149726324 1.159655091 1.081422637 1.110299839 1.227690282 1 20.70453965 -5.333003997 24.99957969 1.125539104 1.284061134 0.392500112 0.09366938 151.9893477 53093.64528 0.026201809 0.038863568 4.65E-06 5.333003997 0.15852203 QRPVPQPSSAS(ph)LDEYTLMR ddPTM_HeLa_A486_30min_R1 7 QRPVPQPSSASLDEYTLMR 19 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 QRPVPQPSS(0.001)AS(0.999)LDEYTLMR;QRPVPQPS(0.002)S(0.046)AS(0.952)LDEYTLMR;QRPVPQPSSAS(1)LDEYTLMR;QRPVPQPSS(0.001)AS(0.999)LDEYTLMR;QRPVPQPS(0.001)S(0.006)AS(0.992)LDEYTLMR;QRPVPQPS(0.001)S(0.018)AS(0.981)LDEYTLMR;QRPVPQPS(0.002)S(0.024)AS(0.974)LDEYTLMR ;;;;;; 294.92 2.69E-79 6376000000 1596580 1491380 1332450 606675 1753340 1420380 1767010 1679010 1338830 1938300 TRUE FALSE FALSE 1484667.987 1373197.617 1848410.324 1412370.06 1533419.748 1245147.957 1324885.408 1296736.076 1454880.862 1452937.064 1.021839159 0.945118444 1.272188844 0.972079311 1.055393097 0.85698685 0.911867032 0.892492943 1.001337841 1 20.47054078 -6.240034316 23.07930785 0.924525882 1.054957996 0.299406205 0.091958792 367.7576767 396521.9699 0.030107872 0.030068551 5.75E-07 6.240034316 0.130432113 QRQPPGT(ph)QQSHSSPGEITSSPQGLDNPALLR ddPTM_HeLa_A486_30min_R1 1 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QRQPPGT(0.326)QQS(0.251)HS(0.151)S(0.272)PGEITSSPQGLDNPALLR 165.96 2.52E-14 634240000 100410 96526 104900 37328 149690 101310 131100 117650 80700 113470 TRUE FALSE FALSE 93371.77752 88876.92822 145520.0893 86901.47045 130914.4844 88811.40224 98297.39337 90863.66328 87695.14098 85056.37343 1.097763445 1.044917913 1.710866375 1.021692637 1.539149615 1.04414753 1.15567346 1.068275775 1.031023749 1 16.37613172 QRQPPGTQQSHS(ph)SPGEITSSPQGLDNPALLR ddPTM_HeLa_A485_30min_R1 1 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QRQPPGT(0.005)QQS(0.022)HS(0.486)S(0.486)PGEITSSPQGLDNPALLR 148.98 8.00E-10 638890000 77468 129280 89964 49727 133750 125190 161050 217660 81335 81235 TRUE FALSE FALSE 94700.48934 144398.1714 123245.4273 52443.46009 120433.3804 131744.7548 126640.3518 164278.5437 97658.18845 60984.60952 1.552858829 2.367780536 2.020926727 0.859945821 1.974815963 2.160295128 2.076595273 2.693770527 1.601357936 1 15.89615758 -5.97318337 24.97640124 2.027863824 1.72675056 0.013507687 0.54596737 682.3433286 635515.9761 0.168644765 0.191220384 1.06E-06 5.97318337 -0.301113264 QRQPPGTQQSHS(ph)SPGEITSSPQGLDNPALLR ddPTM_HeLa_A486_30min_R1 2 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QRQPPGT(0.006)QQS(0.027)HS(0.55)S(0.417)PGEITSSPQGLDNPALLR;QRQPPGT(0.079)QQS(0.079)HS(0.465)S(0.376)PGEITSSPQGLDNPALLR ; 130.77 1.32E-06 1086260000 160664 147091 146127 55219 219217 118756 183752 195879 147077 178703 TRUE FALSE FALSE 149402.2833 135434.9735 202711.2878 128552.6226 191720.7597 104105.0921 137775.3061 151281.6277 159825.7528 133954.6056 1.115320243 1.011051265 1.51328345 0.959673033 1.43123679 0.777166949 1.028522352 1.129349954 1.193133689 1 17.03138466 -6.256299036 24.94390856 1.03389945 1.198650098 0.185898563 0.188120705 818.3376808 3971050.591 0.061732349 0.059947958 5.54E-07 6.256299036 0.164750648 QRQPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_HeLa_A485_30min_R1 3 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QRQPPGT(0.001)QQS(0.018)HS(0.216)S(0.765)PGEITSSPQGLDNPALLR;QRQPPGTQQS(0.01)HS(0.26)S(0.731)PGEITSSPQGLDNPALLR;QRQPPGT(0.003)QQS(0.003)HS(0.15)S(0.843)PGEITSSPQGLDNPALLR ;; 224.87 3.09E-39 2083260000 146176 294873 266119 133976 310997 314422 322879 525762 202958 200699 TRUE FALSE FALSE 178692.3469 329355.8323 364567.4922 141294.7696 280033.0467 330884.6497 253893.264 396818.0451 243689.809 150668.4329 1.185997249 2.185964412 2.41966738 0.93778615 1.858604628 2.196111311 1.685112529 2.633717213 1.617391276 1 17.20101766 -5.989420036 24.94080603 1.931696965 1.724391946 0 0.565285163 995.6361657 2347058.339 0.172340203 0.195223967 1.02E-06 5.989420036 -0.20730502 QRQPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_HeLa_A486_30min_R1 1 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 0 QRQPPGT(0.001)QQS(0.017)HS(0.218)S(0.754)PGEIT(0.007)S(0.001)SPQGLDNPALLR 203.71 2.10E-29 285960000 38351 27775 26677 11860 49981 34730 49339 43746 30703 38398 TRUE FALSE FALSE 35662.79294 25574.00785 37007.04883 27610.67937 43711.91693 30445.36571 36993.86035 33785.99077 33364.36076 28782.89087 1.239027487 0.88851422 1.285730784 0.959274018 1.518677089 1.057759134 1.285272578 1.173822008 1.159173375 1 14.81292388 -3.929701385 21.88075112 1.158610206 4.015875561 0.020318512 0.176095931 4887.039179 1707622.187 0.039755064 83831.88481 0.000117571 3.929701385 2.857265354 QRQPS(ph)EGSSSR ddPTM_HeLa_A485_30min_R1 2 QRQPSEGSSSR 11 1 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QRQPS(0.95)EGS(0.049)S(0.001)SR;QRQPS(0.67)EGS(0.163)S(0.163)S(0.004)R ; 180.61 2.68E-09 1374500000 671810 1086590 826790 566150 758090 741790 839450 969330 643330 660910 TRUE FALSE FALSE 821251.8168 1213657.248 1132654.027 597077.3409 682611.8978 780628.9774 660094.6498 731600.2976 772440.43 496157.3001 1.655224697 2.44611386 2.282852689 1.203403317 1.375797348 1.573349777 1.330414064 1.474532971 1.556845843 1 18.92043806 -5.25869011 24.99706738 1.387380164 2.159868795 0.669020923 0.246964809 136.6063664 1242053.66 0.065727765 0.107636144 5.51E-06 5.25869011 0.772488632 QRQPS(ph)EGSSSREEEGPSTSCILESLFR ddPTM_HeLa_A485_30min_R1 2 QRQPSEGSSSREEEGPSTSCILESLFR 27 2 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QRQPS(0.953)EGS(0.032)S(0.008)S(0.008)REEEGPSTSCILESLFR;QRQPS(0.838)EGS(0.119)S(0.022)S(0.022)REEEGPSTSCILESLFR ; 105.05 0.00024213 152420000 10815.9 16118.4 23604 16005.2 39958 21255.4 29275 35926 24893 25851 TRUE FALSE FALSE 13221.85964 18003.30667 32336.10184 16879.52355 35979.64122 22368.29988 23020.1571 27115.09217 29888.79677 19406.82145 0.681299597 0.927679307 1.666223494 0.869772703 1.853968787 1.15259987 1.186188947 1.39719388 1.540118089 1 14.24427623 -4.572498808 6.610811569 1.337224059 0.739112222 0.368088086 0.285149813 0.163359263 16.14006591 0.067904117 0.186175937 2.68E-05 4.572498808 -0.598111837 QRQPS(ph)EGSSSREEEGPSTSCILESLFR ddPTM_HeLa_A486_30min_R1 2 QRQPSEGSSSREEEGPSTSCILESLFR 27 2 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QRQPS(0.857)EGS(0.109)S(0.017)S(0.017)REEEGPSTSCILESLFR;QRQPS(1)EGSSSREEEGPSTSCILESLFR ; 157.88 3.62E-10 91466000 16041.2 14914.5 15189.8 7940.3 31279 16983.4 27286.2 28496.7 13261.6 17888.2 TRUE FALSE FALSE 14916.79472 13732.6207 21071.69736 18485.41968 27355.69615 14888.16078 20458.90416 22008.62349 14411.12617 13408.87829 1.112456568 1.024143885 1.571473535 1.378595531 2.040118164 1.110321122 1.525772978 1.6413471 1.074745095 1 13.71090093 -4.754768024 24.88610915 1.454402701 1.068300055 0.174229989 0.295883486 214.1565841 798844.7273 0.072064566 0.181538734 1.76E-05 4.754768024 -0.386102646 QRQPSEGSS(ph)SR ddPTM_HeLa_A486_30min_R1 1 QRQPSEGSSSR 11 1 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QRQPSEGS(0.069)S(0.929)S(0.002)R 218.4 1.16E-16 139830000 361830 244790 335280 97527 317650 297000 286790 256440 285320 315380 TRUE FALSE FALSE 336467.5855 225391.9489 465109.3951 227047.7847 277807.375 260359.1597 215032.1086 198054.21 310051.7673 236406.7952 1.423256828 0.953407235 1.967411278 0.960411415 1.175124322 1.101318426 0.909585143 0.837768685 1.311518 1 17.85091198 QRQVLQSTQS(ph)PR ddPTM_HeLa_A485_30min_R1 2 QRQVLQSTQSPR 12 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QRQVLQSTQS(1)PR;QRQVLQS(0.014)T(0.004)QS(0.982)PR ; 166.64 1.02E-10 422280000 294260 681890 442120 209180 497640 565750 636330 931830 335290 283930 TRUE FALSE FALSE 359717.1218 761631.1038 605678.5861 220606.9737 448093.2143 595371.7952 500372.8972 703297.2314 402579.6275 213151.4763 1.687612622 3.573191783 2.841540657 1.034977461 2.102228997 2.793186355 2.347499092 3.299518462 1.888702037 1 17.70151952 -8.007687155 24.34612723 0.999999905 2.466253533 0.291562164 0.704898402 278.6387553 882485.5701 0.696148698 0.179744821 9.82E-09 8.007687155 1.466253628 QRQVLQSTQS(ph)PR ddPTM_HeLa_A486_30min_R1 2 QRQVLQSTQSPR 12 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QRQVLQS(0.008)T(0.008)QS(0.984)PR;QRQVLQS(0.049)T(0.029)QS(0.922)PR ; 108.36 0.00023273 231040000 401590 264380 220220 89753 337010 218238 283870 285180 201057 373020 TRUE FALSE FALSE 373440.6148 243429.5659 305495.0817 208949.5199 294739.0633 191314.0144 212842.7235 220250.7394 218484.7826 279613.364 1.335560681 0.87059346 1.09256252 0.747280162 1.054095051 0.684209122 0.761203687 0.78769747 0.78138176 1 18.09307379 -1.000000002 0.657353483 0.816232842 45.43758163 0.528710301 0.133105263 172.224509 1.080796477 0.052149068 11200.81182 0.1 1.000000002 44.62134879 QRS(ph)DDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_HeLa_A485_30min_R1 3 QRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 33 2 R4GMM6;R4GN77;R4GNG6;R4GND1;A0A1B0GX65;Q969T4 R4GMM6 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 0 QRS(0.631)DDES(0.367)PS(0.002)TSSGSSDADQRDPAAPEPEEQEER;QRS(0.598)DDES(0.4)PS(0.001)T(0.001)SSGSSDADQRDPAAPEPEEQEER;QRS(0.996)DDES(0.004)PSTSSGSSDADQRDPAAPEPEEQEER ;; 173.11 4.71E-15 6865360000 445847 436473 398910 455846 542889 514071 743193 693908 439266 642025 TRUE FALSE FALSE 545024.127 487514.7205 546483.409 480747.7127 488837.065 540986.9627 584403.7442 523725.975 527422.657 481979.9831 1.130802411 1.011483335 1.133830093 0.997443316 1.014226902 1.122426204 1.212506255 1.086613539 1.094283322 1 18.87861371 -6.285357287 24.18134995 1.115412994 1.05589527 0.093759093 0.065484761 982.7603453 993580.9852 0.022692338 0.020025186 5.18E-07 6.285357287 -0.059517724 QRS(ph)DDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_HeLa_A486_30min_R1 3 QRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 33 2 R4GMM6;R4GN77;R4GNG6;R4GND1;A0A1B0GX65;Q969T4 R4GMM6 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 0 QRS(1)DDESPSTSSGSSDADQRDPAAPEPEEQEER;QRS(0.998)DDES(0.002)PSTSSGSSDADQRDPAAPEPEEQEER;QRS(0.926)DDES(0.038)PS(0.01)T(0.016)S(0.004)S(0.004)GS(0.001)S(0.001)DADQRDPAAPEPEEQEER ;; 287.53 6.41E-79 3302640000 74727.7 71610.5 71431 36325.8 110957 86307.6 99763.5 97262.5 87452.2 83778.8 TRUE FALSE FALSE 69489.67412 65935.82318 99090.99619 84568.2982 97039.73843 75659.84582 74801.61711 75117.95198 95032.62711 62800.04317 1.106522713 1.049932768 1.57788102 1.346628027 1.545217703 1.204773787 1.191107734 1.19614491 1.513257353 1 15.93847793 QRS(ph)DQDS(ph)DS(ph)DQPSR ddPTM_HeLa_A485_30min_R1 2 QRSDQDSDSDQPSR 14 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 3 0 QRS(1)DQDS(1)DS(0.999)DQPS(0.001)R;QRS(1)DQDS(1)DS(1)DQPSR ; 129.43 0.00020745 321730000 294210 365690 323850 447690 479840 350100 434970 435650 374920 571730 TRUE FALSE FALSE 359655.9995 408454.2644 443655.5915 472146.1711 432065.4448 368430.6946 342035.1061 328806.1544 450163.005 429208.2329 0.837952238 0.951645922 1.033660488 1.100039875 1.006656936 0.85839615 0.796897822 0.766076066 1.048821925 1 18.71131822 -6.261040738 24.75129171 0.873346859 0.993067373 0.153405444 0.101715071 48.60821187 3018097.598 0.035715995 0.033659784 5.48E-07 6.261040738 0.119720514 QRS(ph)DQDS(ph)DS(ph)DQPSR ddPTM_HeLa_A486_30min_R1 2 QRSDQDSDSDQPSR 14 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 3 0 QRS(1)DQDS(1)DS(1)DQPSR;QRS(1)DQDS(0.997)DS(0.715)DQPS(0.287)R ; 186.45 1.58E-16 222540000 309090 328360 324620 154035 391780 390780 364130 370780 353820 379570 TRUE FALSE FALSE 287424.3871 302339.5577 450321.5576 358601.2645 342639.2992 342569.5368 273020.8226 286361.4881 384489.4025 284523.2014 1.010196658 1.06261829 1.582723502 1.260358602 1.204257851 1.204012661 0.959573143 1.006460938 1.351346395 1 18.11818678 -6.582869986 10.30058819 1.079845254 1.23374255 0.136456543 0.17394321 0.933204082 154.4158984 0.069489464 0.05380088 2.61E-07 6.582869986 0.153897296 QRS(ph)PIALPVK ddPTM_HeLa_A485_30min_R1 4 QRSPIALPVK 10 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK ;;; 112.15 0.00031335 13680700000 13708900 15859400 11490800 13308400 15556300 14008200 16838700 16215400 11830700 16356800 TRUE FALSE FALSE 16758397.51 17714018.87 15741725.09 14035404.19 14007460.15 14741647.69 13240974.19 12238547.73 14205012.97 12279350.78 1.364762503 1.442585946 1.281967212 1.143008652 1.140732959 1.200523379 1.078312235 0.9966771 1.156821173 1 23.54973095 -5.007735395 0.58538579 1.057546458 1.51735363 0.790161724 0.063753858 0.801918419 0.372815052 0.038962451 0.22507144 9.82E-06 5.007735395 0.459807172 QRS(ph)PIALPVK ddPTM_HeLa_A486_30min_R1 6 QRSPIALPVK 10 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK;QRS(1)PIALPVK ;;;;; 137.8 1.49E-05 15646670000 19655930 17769280 11440210 4999060 16762230 16220710 17789410 16113020 13453470 18286100 TRUE FALSE FALSE 18278150.81 16361177.54 15870165.69 11638064.32 14659754.81 14219563.72 13338311.46 12444437.09 14619627.61 13707141.54 1.333476477 1.193624323 1.157802715 0.849051152 1.069497588 1.037383592 0.973092123 0.907879813 1.066570121 1 23.70842441 -4.864279342 2.159391126 0.987917639 1.292456856 0.704999963 0.073199858 0.168945219 1.543073388 0.02010939 0.062021265 1.37E-05 4.864279342 0.304539217 QRS(ph)PIALPVKQEPPQIDAVK ddPTM_HeLa_A485_30min_R1 3 QRSPIALPVKQEPPQIDAVK 20 2 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 QRS(1)PIALPVKQEPPQIDAVK;QRS(1)PIALPVKQEPPQIDAVK;QRS(1)PIALPVKQEPPQIDAVK ;; 206.96 7.68E-27 2181510000 826670 896080 767820 1048900 1982910 1706160 2655990 3681740 1174010 1849720 TRUE FALSE FALSE 1010559.89 1000868.761 1051868.57 1106198.751 1785484.518 1795491.899 2088516.039 2778787.492 1409623.038 1388618.846 0.727744617 0.720765647 0.75749265 0.796617988 1.285798852 1.293005568 1.504023977 2.001116074 1.01512596 1 20.40521923 -5.832574884 1.996526148 1.438870841 0.723863593 0.538816668 0.267788866 0.228936129 1.87557043 0.092024866 0.113619053 1.47E-06 5.832574884 -0.715007248 QRS(ph)PIALPVKQEPPQIDAVK ddPTM_HeLa_A486_30min_R1 2 QRSPIALPVKQEPPQIDAVK 20 2 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 QRS(1)PIALPVKQEPPQIDAVK;QRS(1)PIALPVKQEPPQIDAVK ; 217.84 1.30E-35 1338330000 852960 776640 530700 534660 1471420 1079800 1557780 1732350 689750 1148650 TRUE FALSE FALSE 793171.9087 715096.2179 736201.2526 1244715.5 1286860.783 946585.2546 1168006.967 1337931.722 749538.0854 861020.5635 0.921199728 0.830521649 0.855033299 1.445628075 1.494576132 1.099375897 1.356537831 1.553890556 0.870522862 1 19.71568817 -5.248761014 24.3992309 1.290248934 0.865078496 0.41653642 0.210020248 492.7288549 948242.8817 0.055321473 0.094956172 5.64E-06 5.248761014 -0.425170437 QRS(ph)PLLNQPVPELSHASLIANQSPFR ddPTM_HeLa_A485_30min_R1 3 QRSPLLNQPVPELSHASLIANQSPFR 26 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(0.999)PLLNQPVPELS(0.001)HASLIANQSPFR ;; 273.73 6.78E-76 2505280000 264291 762726 785446 166616 859620 474468 566784 636351 573744 312071 TRUE FALSE FALSE 323081.6212 851920.1709 1076015.161 175717.8102 774033.2145 499310.4108 445685.9682 480284.9195 688889.1581 234277.4429 1.379055606 3.636373012 4.592909787 0.750041523 3.303916949 2.131278217 1.90238532 2.050068984 2.940484365 1 17.83785853 -5.261059043 24.99997138 2.109257352 3.246138729 0.213828182 1.034162943 55.27746855 3633346.83 0.279599597 0.448315994 5.48E-06 5.261059043 1.136881377 QRS(ph)PLLNQPVPELSHASLIANQSPFR ddPTM_HeLa_A486_30min_R1 4 QRSPLLNQPVPELSHASLIANQSPFR 26 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR ;;; 241.4 1.06E-49 2173410000 364915 498922 617444 83991 789491 340815 365641 412294 545134 195865 TRUE FALSE FALSE 339336.3429 459385.6037 856534.8525 195535.2927 690465.6771 298768.7105 274153.7544 318423.6565 592386.654 146819.1291 2.311254296 3.128922003 5.833945873 1.331810738 4.702831853 2.034944031 1.867289066 2.168815865 4.034805666 1 17.16368042 -6.30529878 24.99791049 2.272103987 3.456721876 0.174856666 1.345174203 879.8040579 501446.6682 0.460173807 0.405837208 4.95E-07 6.30529878 1.184617889 QRS(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_HeLa_A485_30min_R1 5 QRSPSPAPAPAPAAAAGPPTR 21 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR ;;;; 145.77 7.94E-09 5883830000 1339060 1825540 1916420 1426190 2242960 1860950 2127720 2367800 1726970 2065790 TRUE FALSE FALSE 1636929.277 2039021.023 2625383.507 1504099.148 2019643.027 1958386.464 1673115.24 1787093.337 2073557.038 1550826.571 1.055520526 1.314796291 1.692893039 0.969869344 1.302301021 1.262801722 1.078853865 1.152348928 1.337065715 1 20.56460593 -5.29842519 24.9993034 1.171084523 1.350443401 0.191725083 0.183661837 1000.108595 675987.2208 0.051617392 0.076563088 5.03E-06 5.29842519 0.179358878 QRS(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_HeLa_A486_30min_R1 4 QRSPSPAPAPAPAAAAGPPTR 21 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR ;;; 107.91 0.00011105 5299370000 1198340 1440510 1205740 475234 1572930 1325450 1440300 1481220 1146780 1403460 TRUE FALSE FALSE 1114342.554 1326358.741 1672634.819 1106368.769 1375638.452 1161929.455 1079921.706 1143978.541 1246183.814 1052024.481 1.059236334 1.260767943 1.589920053 1.051656866 1.307610685 1.104469978 1.026517658 1.087406768 1.184557809 1 20.00473685 -6.337468018 5.56973064 1.080439776 1.261474041 0.258237426 0.146797963 0.329105726 18.09713446 0.052891895 0.046622794 4.60E-07 6.337468018 0.181034266 QRSLST(ph)SGESLYHVLGLDK ddPTM_HeLa_A485_30min_R1 1 QRSLSTSGESLYHVLGLDK 19 1 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 QRS(0.217)LS(0.217)T(0.269)S(0.269)GES(0.026)LYHVLGLDK 97.233 0.00038924 111890000 32594 156270 65089 27619 61131 125980 150700 241480 58159 50565 TRUE FALSE FALSE 39844.42285 174544.4171 89168.12968 29127.75603 55044.583 132576.118 118501.7139 182256.6514 69830.97783 37960.07608 1.049640226 4.59810504 2.348997655 0.767326071 1.450065139 3.492514549 3.121745953 4.801272026 1.839590039 1 15.21219526 -6.272376041 24.7136567 3.105524099 2.130935047 0.063647042 1.367044188 1547.681303 3497296.644 0.483801353 0.430841572 5.34E-07 6.272376041 -0.974589052 QRT(ph)LSMIEEEIR ddPTM_HeLa_A486_30min_R1 1 QRTLSMIEEEIR 12 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QRT(0.537)LS(0.463)MIEEEIR 87.02 0.0029726 49143000 33222 27249 33713 8347.7 34760 20584 29457 32190 23712 32233 TRUE FALSE FALSE 30893.30936 25089.69 46767.57647 19433.86747 30400.07668 18044.55536 22086.54704 24861.0397 25767.37525 24161.647 1.278609416 1.038409758 1.935612107 0.8043271 1.258195548 0.74682638 0.914115956 1.0289464 1.066457732 1 14.56043118 -5.325707399 24.9999383 0.975195429 1.379646626 0.400049669 0.247538236 210.0290722 81699.63993 0.067578032 0.100234439 4.72E-06 5.325707399 0.404451197 QRTLS(ph)MIEEEIR ddPTM_HeLa_A485_30min_R1 2 QRTLSMIEEEIR 12 1 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QRT(0.006)LS(0.994)MIEEEIR;QRTLS(1)MIEEEIR ; 209.66 9.12E-18 104583000 64305 125070 103637 47121 120573 124572 139634 196508 98626 81072 TRUE FALSE FALSE 78609.4254 139695.8485 141976.639 49695.10091 108568.3288 131094.3973 109800.0552 148314.1049 118419.3335 60862.24242 1.291595943 2.295279355 2.332753992 0.816517745 1.783837145 2.153952797 1.804075085 2.43688203 1.945694553 1 15.89325987 -6.01600585 24.73026032 1.955586722 1.71480194 0.011296806 0.539632326 2458.364464 3798361.991 0.175855109 0.180928894 9.64E-07 6.01600585 -0.240784782 QRTS(ph)GSGFHR ddPTM_HeLa_A485_30min_R1 4 QRTSGSGFHR 10 1 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 QRT(0.029)S(0.969)GS(0.002)GFHR;QRT(0.03)S(0.97)GSGFHR;QRT(0.258)S(0.723)GS(0.019)GFHR;QRT(0.193)S(0.785)GS(0.021)GFHR ;;; 122.46 7.37E-05 932663000 294661 506768 495831 223504 583332 442414 526407 643826 412292 344394 TRUE FALSE FALSE 360207.3229 566030.1093 679259.5201 235713.4576 525253.4179 465578.1129 413935.8441 485926.664 495035.2226 258542.9139 1.393220636 2.189308153 2.627260248 0.911699547 2.031590849 1.800776923 1.601033414 1.879481656 1.914712011 1 17.98004424 -10.32811771 3.118237566 0.993379168 1.826129447 0.239634381 0.436064228 67244223.93 89640887.43 4124528.317 0.112073423 4.70E-11 10.32811771 0.832750279 QRTS(ph)GSGFHR ddPTM_HeLa_A486_30min_R1 3 QRTSGSGFHR 10 1 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 QRT(0.054)S(0.94)GS(0.007)GFHR;QRT(0.114)S(0.88)GS(0.005)GFHR;QRT(0.259)S(0.704)GS(0.037)GFHR ;; 122.2 7.98E-05 666058000 375716 338647 364372 37573.5 471164 293452 370131 354395 313708 289444 TRUE FALSE FALSE 349380.2486 311811.3784 505466.5966 87473.00686 412066.2177 257248.8758 277520.309 273706.9949 340900.462 216965.3384 1.610304444 1.437148351 2.329711281 0.403165812 1.899226027 1.185668078 1.279099744 1.261524061 1.571220843 1 17.72710506 -1 0.118093091 0.969073216 3.159246147 0.099096707 0.467105049 241.1528262 1.967713586 3.282750502 86.7197759 0.1 1 2.190172931 QRYDENEDLS(ph)DVEEIVSVR ddPTM_HeLa_A485_30min_R1 1 QRYDENEDLSDVEEIVSVR 19 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;F5H0A1 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 QRYDENEDLS(1)DVEEIVSVR 114.88 1.82E-05 71651000 19510 28106 25635 27921 33526 27552 34526 33391 20866 32232 TRUE FALSE FALSE 23849.93219 31392.75221 35118.45326 29446.25353 30188.03372 28994.58012 27149.23805 25201.80489 25053.61481 24197.15559 0.985650239 1.297373656 1.451346343 1.216930371 1.247586049 1.198263987 1.122001218 1.041519314 1.035395037 1 14.56254985 -6.923009532 1.316218122 1.014156214 1.255737291 0.434361623 0.107191861 0.436845137 1.4734986 0.077421855 0.03871029 1.19E-07 6.923009532 0.241581077 QRYDENEDLS(ph)DVEEIVSVR ddPTM_HeLa_A486_30min_R1 1 QRYDENEDLSDVEEIVSVR 19 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;F5H0A1 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 QRYDENEDLS(1)DVEEIVSVR 148.87 8.27E-09 116470000 81463 87762 70527 41770 85740 70036 86841 99137 64876 101020 TRUE FALSE FALSE 75752.86438 80807.4195 97836.94318 97242.67094 74985.68971 61395.67039 65112.46329 76565.66925 70499.50392 75723.93447 1.000382044 1.067131813 1.292021391 1.284173513 0.99025084 0.810782889 0.859866352 1.011115835 0.931006879 1 16.20846175 -5.940865741 6.667872574 0.91721477 1.162304598 0.566219409 0.098764372 0.163309206 14.34495546 0.033643093 0.038140405 1.15E-06 5.940865741 0.245089828 QS(ph)EKAHS(ph)S(ph)GKLQK ddPTM_HeLa_A486_30min_R1 1 QSEKAHSSGKLQK 13 2 P12757-5;P12757 P12757-5 SKIL Ski-like protein 3 0 QS(1)EKAHS(1)S(1)GKLQK 40.577 0.012487 0 190660 193840 150930 35072 200590 187520 237790 227100 176880 188390 TRUE FALSE FALSE 177295.7186 178479.4124 209374.138 81649.38844 175430.1318 164385.689 178292.4269 175394.2876 192212.1008 141215.9178 1.255493866 1.263876022 1.482652532 0.578188279 1.242282984 1.164073368 1.262551911 1.242029159 1.361122059 1 17.10754319 -6.742304321 18.66827867 1.236594554 1.160303948 0.008713999 0.232696744 69.5323143 67833.85681 0.090432826 0.069712154 1.81E-07 6.742304321 -0.076290606 QS(ph)LSLPSMLR ddPTM_HeLa_A486_30min_R1 1 QSLSLPSMLR 10 0 Q96R06 Q96R06 SPAG5 Sperm-associated antigen 5 1 0 QS(0.997)LS(0.003)LPSMLR 73.881 0.011539 21578000 44425 49996 44148 16939 67603 55350 65508 69168 42765 50682 TRUE FALSE FALSE 41311.03691 46034.13488 61243.28792 39434.84805 59123.60137 48521.47976 49117.20553 53419.95633 46471.90463 37990.89732 1.087393029 1.211714861 1.61205163 1.038007808 1.556257039 1.277186989 1.292867739 1.406125154 1.223237878 1 15.21336617 -8.025035083 15.51753815 0.999999987 1.314447229 0.229007175 0.171995788 18.65880691 11567.13571 0.157088476 0.040561125 9.44E-09 8.025035083 0.314447242 QS(ph)PDHPTVGAGVLHITENGPTEVDYS(ph)PSDMQDSSLSHK ddPTM_HeLa_A485_30min_R1 3 QSPDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK 38 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QS(0.999)PDHPT(0.001)VGAGVLHITENGPTEVDY(0.005)S(0.97)PS(0.02)DMQDS(0.003)S(0.003)LS(0.001)HK;QS(1)PDHPTVGAGVLHITENGPTEVDYS(0.969)PS(0.031)DMQDSSLSHK;QS(0.994)PDHPT(0.005)VGAGVLHITENGPT(0.001)EVDY(0.051)S(0.875)PS(0.064)DMQDS(0.004)S(0.004)LS(0.001)HK ;; 226.4 3.16E-40 1075303000 103101 111382 118105 85390 164626 85886 121776 100893 131484 174799 TRUE FALSE FALSE 126035.4618 124407.156 161796.9543 90054.63948 148235.2574 90382.85816 95757.56278 76148.83356 157871.6328 131224.8262 0.9604544 0.948045881 1.232975184 0.686262212 1.129628148 0.688763405 0.729721391 0.580292889 1.203062235 1 17.00168116 -6.266482864 24.94711901 0.807220883 0.985521152 0.104837449 0.209517977 826.4927303 4088154.402 0.07017211 0.063781262 5.41E-07 6.266482864 0.178300269 QS(ph)PDHPTVGAGVLHITENGPTEVDYS(ph)PSDMQDSSLSHK ddPTM_HeLa_A486_30min_R1 3 QSPDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK 38 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QS(1)PDHPTVGAGVLHITENGPTEVDYS(0.991)PS(0.009)DMQDSSLSHK;QS(0.831)PDHPT(0.169)VGAGVLHITENGPTEVDY(0.002)S(0.847)PS(0.144)DMQDS(0.004)S(0.003)LSHK;QS(1)PDHPTVGAGVLHITENGPTEVDYS(0.894)PS(0.106)DMQDSSLSHK ;; 338.65 3.88E-130 1828520000 277496 297519 207963 21513.5 268773 262824 300252 272452 275674 157214 TRUE FALSE FALSE 258044.9634 273942.5109 288491.843 50084.51523 235060.9841 230399.4471 225125.7739 210420.6272 299569.6443 117846.5911 2.189668458 2.324568817 2.448028749 0.424997573 1.994635415 1.955079438 1.910329113 1.785547 2.54203063 1 16.8465505 QS(ph)PDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK ddPTM_HeLa_A485_30min_R1 2 QSPDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK 38 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QS(0.998)PDHPT(0.002)VGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(0.999)PDHPT(0.001)VGAGVLHITENGPTEVDYSPSDMQDSSLSHK ; 353.02 5.79E-150 3191800000 128598 122501 115149 98342 180549 97028 127884 98609 137835 213242 TRUE FALSE FALSE 157204.1814 136826.4263 157747.4068 103714.1744 162572.9076 102108.236 100560.5387 74424.98814 165497.2202 160084.6938 0.982006322 0.854712734 0.985399685 0.647870649 1.015543109 0.637838844 0.628170853 0.464910082 1.033810393 1 17.28847585 -6.273011576 24.96638955 0.711704466 0.885810035 0.107948952 0.188093784 1333.857943 2877718.542 0.063513531 0.056479188 5.33E-07 6.273011576 0.174105569 QS(ph)PDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK ddPTM_HeLa_A486_30min_R1 8 QSPDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK 38 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QS(1)PDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(0.614)PDHPT(0.386)VGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(1)PDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(0.999)PDHPT(0.001)VGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(0.721)PDHPT(0.279)VGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(0.736)PDHPT(0.216)VGAGVLHIT(0.045)ENGPT(0.003)EVDYSPSDMQDSSLSHK;QS(1)PDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK;QS(1)PDHPTVGAGVLHITENGPTEVDYSPSDMQDSSLSHK ;;;;;;; 417.41 2.51E-247 8749570000 2229818 2299479 1643106 134780.5 1962199 2019664 2351794 2101273 2339340 1060486 TRUE FALSE FALSE 2073519.273 2117259.909 2279360.647 313775.8154 1716081.705 1770498.39 1763350.266 1622859.008 2542115.875 794933.403 2.60841885 2.663443128 2.867360509 0.394719626 2.158774179 2.227228575 2.218236471 2.041503102 3.197897918 1 19.60047448 QS(ph)PECENFLDVGLGR ddPTM_HeLa_A485_30min_R1 1 QSPECENFLDVGLGR 15 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;A0A087X047 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 QS(1)PECENFLDVGLGR 62.377 0.023327 37356000 21514 17031 16352 27261 23591 17328 19500 13904 16417 34255 TRUE FALSE FALSE 26299.71508 19022.6273 22401.28526 28750.1994 21242.19721 18235.26729 15333.6657 10494.0222 19711.74131 25715.85892 1.022704128 0.739723583 0.871107799 1.117994911 0.82603491 0.7091059 0.596272742 0.408075897 0.766520822 1 14.65037072 -6.222002715 3.023826892 0.647196777 0.922286911 0.289840234 0.169434145 0.29515146 5.429213087 0.060554323 0.057875227 6.00E-07 6.222002715 0.275090134 QS(ph)PECENFLDVGLGR ddPTM_HeLa_A486_30min_R1 1 QSPECENFLDVGLGR 15 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;A0A087X047 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 QS(1)PECENFLDVGLGR 82.707 0.0031577 25529000 14365 24249 13898 6347.2 18771 19465 17067 14751 18094 18871 TRUE FALSE FALSE 13358.08768 22327.42093 19279.6778 14776.60237 16416.56615 17063.60621 12796.65608 11392.51931 19662.40249 14145.57877 0.944329525 1.578402785 1.362947258 1.044609246 1.16054397 1.206285475 0.904639979 0.805376683 1.390003393 1 13.78806359 -5.263748221 24.79138788 1.067134258 1.323544156 0.185797851 0.210375376 263.9333919 2834021.927 0.057770704 0.09054132 5.45E-06 5.263748221 0.256409898 QS(ph)PGPALAR ddPTM_HeLa_A485_30min_R1 3 QSPGPALAR 9 0 P85037 P85037 FOXK1 Forkhead box protein K1 1 0 QS(1)PGPALAR;QS(1)PGPALAR;QS(1)PGPALAR ;; 106.38 0.0011151 3869020000 3957290 5126200 4717430 3877150 5999070 4482260 5030990 4973400 4249130 4822970 TRUE FALSE FALSE 4837575.508 5725664.498 6462603.666 4088948.887 5401781.527 4716944.203 3956077.887 3753665.852 5101891.416 3620692.339 1.336091293 1.581372832 1.784908261 1.129327903 1.491919506 1.3027741 1.092630226 1.036725991 1.409092775 1 21.78783416 -6.119624223 0.934188286 1.131581693 1.533705874 0.40160403 0.188386759 0.568865333 1.074221578 0.106405319 0.113178391 7.59E-07 6.119624223 0.402124181 QS(ph)PGPALAR ddPTM_HeLa_A486_30min_R1 3 QSPGPALAR 9 0 P85037 P85037 FOXK1 Forkhead box protein K1 1 0 QS(1)PGPALAR;QS(1)PGPALAR;QS(1)PGPALAR ;; 120.55 0.00043614 5036120000 5057830 5568180 4360900 1498170 5890560 5042150 5434030 5603720 4508380 5409810 TRUE FALSE FALSE 4703302.236 5126937.138 6049557.269 3487815.473 5151711.038 4420100.798 4074378.219 4327875.284 4899170.008 4055158.364 1.159831951 1.264300103 1.49181776 0.86009353 1.270409334 1.089994619 1.004739606 1.067251855 1.208132844 1 21.95132683 -5.256700466 24.99226583 1.080594201 1.301214938 0.400183879 0.130810363 424.8171918 2240410.628 0.035059084 0.058314829 5.54E-06 5.256700466 0.220620737 QS(ph)PNSSSAAASVASR ddPTM_HeLa_A485_30min_R1 2 QSPNSSSAAASVASR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 QS(0.999)PNS(0.001)SSAAASVASR;QS(0.979)PNS(0.021)SSAAASVASR ; 139.03 4.11E-06 621310000 529740 608390 888810 489050 1050150 657720 743190 753360 716310 661510 TRUE FALSE FALSE 647578.8354 679535.9182 1217617.805 515765.5632 945593.3787 692157.2022 584401.3852 568597.2788 860066.8466 496607.7312 1.30400474 1.368355496 2.451870418 1.038577394 1.904105231 1.393770493 1.176786724 1.144962599 1.731883724 1 18.9217472 -6.510088378 22.09553096 1.276886886 1.617871017 0.147876085 0.398114141 264.6424873 457179.0274 0.140791869 0.118161218 3.09E-07 6.510088378 0.340984131 QS(ph)PNSSSAAASVASR ddPTM_HeLa_A486_30min_R1 2 QSPNSSSAAASVASR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 QS(0.997)PNS(0.003)SSAAASVASR;QS(0.994)PNS(0.002)S(0.002)S(0.002)AAASVASR ; 144.66 8.49E-08 952000000 818940 1110400 1431220 302750 1743290 924000 952520 1060480 1035540 917240 TRUE FALSE FALSE 761536.535 1022407.86 1985426.713 704817.3001 1524630.313 810006.2745 714189.4213 819031.8541 1125301.441 687557.1338 1.10759746 1.487015129 2.887653427 1.02510361 2.217459812 1.178093041 1.038734654 1.191220066 1.636666083 1 19.39112008 -6.300066003 24.26010708 1.210255784 1.754125683 0.205393903 0.526994624 641.2899845 402770.8252 0.183308735 0.161666756 5.01E-07 6.300066003 0.543869899 QS(ph)PPISTSK ddPTM_HeLa_A486_30min_R1 1 QSPPISTSK 9 0 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 QS(0.997)PPIS(0.003)TSK 99.215 0.0020594 228790000 611920 672470 335170 206170 548740 666600 651860 669150 508980 753050 TRUE FALSE FALSE 569027.568 619181.0281 464956.8002 479974.1793 479911.9124 584361.6695 488757.7333 516799.1524 553098.7962 564481.3785 1.008053746 1.096902487 0.823688465 0.850292317 0.850182009 1.035218684 0.865852714 0.915529143 0.979835327 1 19.10656646 -4.750924899 24.99126269 0.909959669 1.052478145 0.378871034 0.0701281 208.2127596 494879.2742 0.017945595 0.04638944 1.77E-05 4.750924899 0.142518475 QS(ph)PS(ph)SSPTR ddPTM_HeLa_A485_30min_R1 1 QSPSSSPTR 9 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 QS(0.901)PS(0.763)S(0.195)S(0.139)PT(0.002)R 77.124 0.021129 202590000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 QS(ph)PSFK ddPTM_HeLa_A486_30min_R1 1 QSPSFK 6 0 Q6IN85-2;Q6IN85;Q6IN85-4 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 0 QS(0.994)PS(0.006)FK 93.701 0.01446 802720000 2535100 2634700 1511300 1020000 2475300 3155700 3345100 3220500 2227700 3596900 TRUE FALSE FALSE 2357402.581 2425916.777 2096515.834 2374611.548 2164824.793 2766381.819 2508120.599 2487262.453 2420798.83 2696212.828 0.874338463 0.899749735 0.777578021 0.880721107 0.802913171 1.026025019 0.93023836 0.92250227 0.897851536 1 21.36250295 -6.25001788 24.99994499 0.948912014 0.847997242 0.551654901 0.048625333 621.889815 1361223.517 0.016030785 0.015896211 5.62E-07 6.25001788 -0.100914772 QS(ph)PSPS(ph)TRPIR ddPTM_HeLa_A486_30min_R1 2 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 QS(0.785)PS(0.326)PS(0.827)T(0.061)RPIR;QS(0.84)PS(0.23)PS(0.902)T(0.028)RPIR ; 113.37 0.0017857 2015340000 1957230 1985220 1447300 630380 2043060 1778750 2012900 2031500 1502930 2068570 TRUE FALSE FALSE 1820038.284 1827903.937 2007733.32 1467556.498 1786800.364 1559305.91 1509251.13 1568971.797 1633205.183 1550586.608 1.173774025 1.17884672 1.294821785 0.946452452 1.152338318 1.005623228 0.973342038 1.011856925 1.053282141 1 20.56438268 -5.262423113 24.99997743 1.023826908 1.212117433 0.687572487 0.06031408 50.6570241 1287376.407 0.016655991 0.026355288 5.46E-06 5.262423113 0.188290524 QS(ph)PSPSTRPIR ddPTM_HeLa_A485_30min_R1 1 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 QS(0.944)PS(0.055)PSTRPIR 83.869 0.002272 600550000 368690 550920 431410 459150 586250 483570 577450 613510 397630 587780 TRUE FALSE FALSE 450703.8185 615345.3016 591006.5115 484232.2019 527880.8916 508888.9775 454073.0902 463045.7106 477430.6937 441257.2633 1.021408271 1.394527304 1.33936948 1.097392025 1.19631094 1.153270484 1.029043889 1.049378105 1.081978096 1 18.7512605 -6.300722339 0.949985382 1.034947434 1.247171592 0.37414759 0.102267283 0.578114906 1.107042551 0.062326114 0.054888964 5.00E-07 6.300722339 0.212224158 QS(ph)PSPSTRPIR ddPTM_HeLa_A486_30min_R1 2 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 QS(0.997)PS(0.003)PSTRPIR;QS(0.942)PS(0.058)PSTRPIR ; 108.66 0.00029801 1034740000 378970 360140 270650 122930 376210 331070 381440 387840 285340 383690 TRUE FALSE FALSE 352406.16 331601.1948 375452.9283 286187.2525 329022.2338 290225.9495 285999.6775 299537.2985 310073.5009 287611.5266 1.225285246 1.15294821 1.305416833 0.995047924 1.143981389 1.009090119 0.994395742 1.041464861 1.078098311 1 18.13376197 -5.269190584 24.99445598 1.040631961 1.220389909 0.711747013 0.055451781 313.1932982 1009919.674 0.015274769 0.023143965 5.38E-06 5.269190584 0.179757948 QS(ph)PSS(ph)SPTR ddPTM_HeLa_A485_30min_R1 2 QSPSSSPTR 9 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 QS(0.799)PS(0.45)S(0.599)S(0.152)PTR;QS(0.8)PS(0.221)S(0.814)S(0.165)PT(0.001)R ; 132.69 0.00045221 1628950000 1401210 1920190 669280 2449310 723470 1898400 1435790 1885190 1561470 2523980 TRUE FALSE FALSE 1712904.33 2144739.517 916874.5231 2583109.603 651438.7865 1997797.289 1129021.737 1422844.197 1874842.706 1894798.236 0.904003549 1.131909179 0.483890319 1.363263673 0.343803775 1.054358849 0.595853276 0.750921216 0.989468256 1 20.8536128 QS(ph)PSS(ph)SPTR ddPTM_HeLa_A486_30min_R1 2 QSPSSSPTR 9 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 QS(0.878)PS(0.185)S(0.665)S(0.272)PTR;QS(0.912)PS(0.251)S(0.427)S(0.409)PTR ; 122.55 0.00070903 1143850000 3075000 1016480 1521290 598010 1043670 3464600 1589740 1403660 3620200 3537400 TRUE FALSE FALSE 2859458.379 935930.4228 2110374.23 1392197.502 912763.1768 3037172.877 1191970.237 1084077.26 3934001.851 2651612.015 1.078384908 0.352966579 0.795883492 0.525038163 0.344229537 1.145406213 0.449526639 0.40883706 1.483626499 1 21.33843826 -7.760291662 24.99999999 1.241813322 0.630462268 0.403804006 0.293601219 27.31846581 595175.595 0.214029176 0.070488435 1.74E-08 7.760291662 -0.611351054 QS(ph)PSS(ph)SPTRER ddPTM_HeLa_A486_30min_R1 1 QSPSSSPTRER 11 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 QS(0.926)PS(0.23)S(0.447)S(0.395)PT(0.002)RER 92.939 0.0097975 271990000 337680 331180 323910 222090 510230 415830 463800 470250 283100 446960 TRUE FALSE FALSE 314010.3758 304936.0907 449336.6266 517036.7438 446232.1957 364529.1224 347752.3344 363184.3405 307639.3359 335038.3068 0.937237234 0.910152912 1.341150004 1.5432168 1.331884106 1.08802222 1.037947982 1.084008405 0.918221379 1 18.35396653 -6.477778517 5.151547264 1.021830405 1.221542499 0.220083741 0.179800997 0.378742815 23.76922255 0.07580086 0.064566648 3.33E-07 6.477778517 0.199712094 QS(ph)PSSS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 QSPSSSPTR 9 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 QS(0.998)PS(0.111)S(0.372)S(0.516)PT(0.002)R 81.676 0.0034586 0 84867 130820 64209 135080 56424 111600 97733 129670 104800 145570 TRUE FALSE FALSE 103745.3714 146118.261 87962.58106 142459.0784 50806.22844 117443.2034 76851.54614 97868.22919 125832.3987 109282.078 0.949335639 1.337074328 0.804913145 1.303590497 0.464909063 1.074679449 0.703240161 0.895556078 1.151445882 1 16.7376973 -4.774752752 24.99768616 0.915606364 1.143205072 0.116336608 0.239714783 397.4379167 746246.9338 0.059321706 0.124627816 1.68E-05 4.774752752 0.227598708 QS(ph)SFEIPDDVPLPAGWEMAK ddPTM_HeLa_A485_30min_R1 2 QSSFEIPDDVPLPAGWEMAK 20 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK;QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK ; 110.94 1.90E-05 139714000 240042 253850 171235 243766 258900 256700 343360 380100 201218 330140 TRUE FALSE FALSE 293438.5148 283535.5493 234581.9522 257082.3193 233123.0069 270140.4151 269998.331 286879.879 241600.6069 247842.1738 1.183973294 1.144016553 0.946497316 1.037282378 0.940610726 1.08996952 1.089396235 1.157510341 0.974816365 1 17.91906218 -4.593696548 7.801071591 1.036677068 1.174170928 0.405282266 0.06547248 0.220121601 20.63832633 0.01737317 0.046492799 2.55E-05 4.593696548 0.13749386 QS(ph)SFEIPDDVPLPAGWEMAK ddPTM_HeLa_A486_30min_R1 2 QSSFEIPDDVPLPAGWEMAK 20 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK;QS(0.5)S(0.5)FEIPDDVPLPAGWEMAK ; 128.78 3.86E-07 122022000 379420 355710 207790 146346 340190 344130 422440 411740 276450 470830 TRUE FALSE FALSE 352824.6173 327522.2441 288251.8528 340700.8839 297520.1981 301674.7395 316741.0439 317995.7902 300412.9086 352931.1034 0.999698281 0.928006177 0.816736893 0.965346722 0.842997954 0.854769491 0.897458571 0.901013788 0.851194201 1 18.42902705 -4.398379483 3.808796015 0.886765052 0.998374755 0.269488806 0.053570038 0.277350844 6.429858511 0.012536598 0.0643488 4.00E-05 4.398379483 0.111609703 QS(ph)SPAMPHK ddPTM_HeLa_A486_30min_R1 1 QSSPAMPHK 9 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 QS(0.5)S(0.5)PAMPHK 97.214 0.0017434 257800000 352760 299290 193180 104320 359870 300390 343960 378470 287420 376980 TRUE FALSE FALSE 328033.3457 275573.1704 267984.4695 242862.232 314731.7489 263330.9359 257897.57 292300.6429 312333.797 282581.7543 1.160844041 0.975198031 0.948343145 0.859440599 1.113772366 0.931875225 0.912647636 1.034393192 1.105286496 1 18.10830879 -7.508638596 24.12148294 1.05837546 0.981501185 0.089432705 0.088605521 884.5412115 1498349.966 0.051136621 0.022982787 3.10E-08 7.508638596 -0.076874275 QS(ph)SPS(ph)PSRDR ddPTM_HeLa_A485_30min_R1 1 QSSPSPSRDR 10 1 Q15464 Q15464 SHB SH2 domain-containing adapter protein B 2 0 QS(0.816)S(0.207)PS(0.939)PS(0.038)RDR 79.744 0.0055966 0 70557 115810 74316 73003 87509 97224 112060 149340 95582 106050 TRUE FALSE FALSE 86252.16123 129352.9721 101808.5809 76990.96904 78796.2967 102314.4983 88117.46555 112714.1308 114764.4307 79613.68671 1.083383584 1.624757971 1.278782395 0.96705695 0.989733047 1.285137048 1.106813027 1.415763238 1.441516345 1 16.28072885 -4.999962896 24.9999889 1.17928248 1.378495621 0.1180348 0.200497853 2.648457333 1778104.017 0.053792221 0.110172734 1.00E-05 4.999962896 0.199213141 QS(ph)SSSRDDNMFQIGK ddPTM_HeLa_A485_30min_R1 1 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 QS(0.883)S(0.111)S(0.003)S(0.002)RDDNMFQIGK 94.176 0.00046185 358510000 159410 202530 197960 145580 241500 212950 235350 277780 193060 202870 TRUE FALSE FALSE 194870.2045 226214.1217 271193.6418 153532.6668 217455.412 224099.7327 185065.5499 209654.0195 231805.3711 152298.2425 1.279530225 1.48533639 1.780674795 1.008105308 1.427826142 1.471453176 1.215152235 1.376601699 1.522048891 1 17.21653977 -10.40865034 3.4845293 0.996563026 1.396039304 0.27339915 0.193819402 133892048.2 201549457.4 4641280.962 0.047920395 3.90E-11 10.40865034 0.399476278 QS(ph)VGIQK ddPTM_HeLa_A485_30min_R1 1 QSVGIQK 7 0 E5RG45;E5RFG6;E7EWW7;E7ERK7;Q96DN5-3;Q96DN5-2;Q96DN5 E5RG45 TBC1D31 TBC1 domain family member 31 1 0 QS(1)VGIQK 96.331 0.0039336 54453000 20088 102250 163540 7372.3 74706 72653 34028 46272 88908 15585 TRUE FALSE FALSE 24556.5063 114207.248 224040.2515 7775.030081 67268.00833 76456.99874 26757.63982 34923.71945 106751.0201 11699.94632 2.098856322 9.761348036 19.1488273 0.664535534 5.7494288 6.534816198 2.286988255 2.984946981 9.124060672 1 13.51421429 -5.308750951 24.99892394 4.232938407 10.27889255 0.286699951 4.537706874 520.3162101 274928.3772 1.281379499 1.90059815 4.91E-06 5.308750951 6.045954147 QS(ph)VGIQK ddPTM_HeLa_A486_30min_R1 1 QSVGIQK 7 0 E5RG45;E5RFG6;E7EWW7;E7ERK7;Q96DN5-3;Q96DN5-2;Q96DN5 E5RG45 TBC1D31 TBC1 domain family member 31 1 0 QS(1)VGIQK 84.213 0.0067036 41751000 15972 39920 106650 922.12 74287 14361 10063 16783 35415 5112.5 TRUE FALSE FALSE 14852.44528 36756.59381 147947.7362 2146.741961 64969.23176 12589.28583 7545.130964 12961.87727 38484.80071 3832.296723 3.875598982 9.591270319 38.60550131 0.560171124 16.95307969 3.285049865 1.968827445 3.382273923 10.04222885 1 11.90399355 -6.268399366 24.06127434 3.961639234 14.3063227 0.204159706 9.838462513 550.9914743 1904817.968 3.446871513 3.108268085 5.39E-07 6.268399366 10.34468346 QSACNLEK(ac)K ddPTM_HeLa_A485_30min_R1 2 QSACNLEKK 9 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 1 ; QSACNLEK(1)K;QSACNLEK(1)K 191.1 1.71E-08 171493000 149979 146267 115524 166097 196883 149654 217240 225140 135376 234580 FALSE TRUE FALSE 183341.3111 163371.6533 158261.135 175170.4585 177280.6372 157489.652 170824.8993 169924.062 162544.7215 176103.5231 1.041099621 0.927702356 0.898682389 0.994701613 1.006684217 0.894301541 0.97002545 0.964910065 0.923006642 1 17.42606425 -6.21182041 24.99991243 0.94947874 0.968205352 0.054247055 0.045747325 1594.268604 803251.7637 0.015349834 0.015349793 6.14E-07 6.21182041 0.018726612 QSACNLEK(ac)K ddPTM_HeLa_A486_30min_R1 2 QSACNLEKK 9 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 1 ; QSACNLEK(1)K;QSACNLEK(1)K 171.7 3.86E-06 162604000 185630 182888 120999 72120 209897 182097 197934 205982 142736 203154 FALSE TRUE FALSE 172618.2956 168395.2888 167853.0533 167899.0047 183569.761 159631.7236 148408.8197 159084.3952 155108.4714 152282.9161 1.133536841 1.105805517 1.102244806 1.102546556 1.2054521 1.048257596 0.974559875 1.044663441 1.018554644 1 17.21639458 -6.507797976 22.57232714 1.012915313 1.125653232 0.756187995 0.032532301 97.22241941 145519.9776 0.011681477 0.009940003 3.11E-07 6.507797976 0.112737919 QSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_A485_30min_R1 2 QSAGPNSPTGGGGGGGSGGTR 21 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 QSAGPNS(0.98)PT(0.02)GGGGGGGSGGTR;QSAGPNS(0.899)PT(0.101)GGGGGGGSGGTR ; 268.31 2.19E-63 266190000 209010 242520 239450 205360 278950 231790 268650 271940 218820 280510 TRUE FALSE FALSE 255503.5534 270880.6044 328032.5193 216578.2968 251176.7585 243926.166 211250.7328 205246.2886 262735.1669 210584.0194 1.21330932 1.286330298 1.557727506 1.028465016 1.192762676 1.158331799 1.003166021 0.974652726 1.247650071 1 17.68403643 -5.284923969 24.99190001 1.089333245 1.345843205 0.516776625 0.117807667 623.5397705 663559.044 0.033446195 0.049643175 5.19E-06 5.284923969 0.25650996 QSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_A486_30min_R1 4 QSAGPNSPTGGGGGGGSGGTR 21 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 QSAGPNS(0.975)PT(0.025)GGGGGGGSGGTR;QSAGPNS(0.977)PT(0.023)GGGGGGGSGGTR;QSAGPNS(0.978)PT(0.022)GGGGGGGSGGTR;QSAGPNS(0.876)PT(0.116)GGGGGGGS(0.004)GGT(0.004)R ;;; 237.23 2.90E-46 477540000 305739 360212 270592 108770.2 365595 316185 341746 337225 302057 324011 TRUE FALSE FALSE 284308.2749 331667.4893 375372.4691 253222.5225 319738.6661 277177.3094 256237.5362 260446.2291 328239.544 242876.5366 1.170587653 1.365580611 1.545527923 1.042597717 1.316465849 1.141227198 1.055011487 1.072340016 1.351466669 1 17.8898636 -5.275171008 24.91253187 1.146765475 1.361066932 0.352325236 0.136897431 824.6819728 1496173.517 0.038275763 0.057119191 5.31E-06 5.275171008 0.214301457 QSDEVGDRDHR ddPTM_HeLa_A485_30min_R1 2 QSDEVGDRDHR 11 1 P40222 P40222 TXLNA Alpha-taxilin 0 0 ; ; 155.99 1.06E-06 400980000 185912 267013 246470 189895 293280 223646 282850 242119 232753 265690 FALSE FALSE TRUE 227267.483 298237.8476 337649.5095 200268.483 264080.0134 235355.7587 222416.7868 182738.9356 279464.3922 199458.3727 1.139423129 1.495238549 1.692831968 1.004061551 1.323985601 1.179974325 1.115103788 0.916175807 1.401116375 1 17.60572816 -5.274334851 24.98850093 1.139853828 1.447771964 0.362742586 0.187029917 797.8096332 1545972.838 0.051958421 0.077605159 5.32E-06 5.274334851 0.307918136 QSDEVGDRDHR ddPTM_HeLa_A486_30min_R1 2 QSDEVGDRDHR 11 1 P40222 P40222 TXLNA Alpha-taxilin 0 0 ; ; 147.24 2.81E-06 537070000 129390 118670 122070 49401 148190 132320 137710 120870 117990 138840 FALSE FALSE TRUE 120320.4292 109266.157 169338.7731 115008.0246 129602.6284 115995.7037 103253.5015 93350.53957 128217.4682 104073.5603 1.156109475 1.049893524 1.627106564 1.105064766 1.245298306 1.114554969 0.992120392 0.896966908 1.231988872 1 16.66724408 -6.435180376 2.690417808 1.022264 1.242545388 0.256808827 0.165279115 0.392770419 5.5656888 0.065968962 0.054900535 3.67E-07 6.435180376 0.220281388 QSEKPHS(ph)TPPQSCTSDLSK ddPTM_HeLa_A486_30min_R1 1 QSEKPHSTPPQSCTSDLSK 19 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 QS(0.011)EKPHS(0.493)T(0.493)PPQS(0.003)CTSDLSK 102.94 7.94E-05 245570000 165920 148380 87594 16772 152800 170480 228140 195060 127090 154610 TRUE FALSE FALSE 154289.8648 136621.8284 121512.7426 39046.06361 133634.3992 149447.9109 171056.959 150649.0961 138106.2635 115894.6497 1.331294113 1.178845001 1.048475862 0.336909976 1.15306789 1.289515188 1.475969421 1.299879646 1.191653488 1 16.82245444 -5.992574932 24.99995139 1.277193705 0.962742155 0.192147753 0.265683817 287.1177265 966707.5532 0.087461815 0.098979035 1.02E-06 5.992574932 -0.31445155 QSEKPHST(ph)PPQSCTSDLSK ddPTM_HeLa_A485_30min_R1 1 QSEKPHSTPPQSCTSDLSK 19 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 QS(0.003)EKPHS(0.218)T(0.779)PPQSCTSDLSK 137.9 1.39E-06 289380000 205370 204770 157650 207080 312940 246220 383020 360250 212230 400480 TRUE FALSE FALSE 251053.848 228716.0702 215971.2954 218392.256 281782.5948 259111.6985 301184.648 271898.1226 254822.6143 300647.7063 0.835043284 0.760744438 0.718353378 0.726405861 0.93725177 0.86184492 1.00178595 0.904374512 0.847578774 1 18.19771443 -5.764594431 24.99983889 0.921325676 0.757195609 0.680693303 0.055417192 48.50281394 384324.6838 0.016986127 0.020080199 1.72E-06 5.764594431 -0.164130066 QSELSAEES(ph)PEK ddPTM_HeLa_A486_30min_R1 1 QSELSAEESPEK 12 0 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 1 0 QSELSAEES(1)PEK 189.32 3.63E-15 0 257660 257560 142620 134970 201200 286150 347780 296350 219580 432650 TRUE FALSE FALSE 239599.3646 237150.0076 197846.2835 314216.981 175963.6199 250847.7224 260761.7656 228877.5743 238613.3712 324311.6239 0.738793638 0.731241158 0.61004993 0.968873632 0.542575742 0.773477433 0.80404693 0.70573349 0.735753373 1 18.30702121 -10.53236154 2.299519862 1.022327116 0.734342151 0.356583391 0.106989782 1663713.056 1366166.367 229586.4492 0.026370027 2.94E-11 10.53236154 -0.287984965 QSELSAEES(ph)PEKLGTSQLHR ddPTM_HeLa_A485_30min_R1 3 QSELSAEESPEKLGTSQLHR 20 1 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 1 0 QSELSAEES(1)PEKLGTSQLHR;QSELSAEES(1)PEKLGTSQLHR;QSELSAEES(1)PEKLGTSQLHR ;; 260.32 5.86E-59 2044760000 584070 553790 448310 766890 955050 643810 1028890 1091660 592860 1221200 TRUE FALSE FALSE 713994.3565 618550.9232 614158.5247 808783.2588 859961.8686 677518.8961 809059.2462 823928.6733 711841.564 916777.3145 0.778808927 0.674701384 0.669910255 0.882202522 0.938026994 0.739022318 0.882503563 0.898722798 0.776460709 1 19.80621182 -1 0.086723725 1.101551904 0.019262773 0.420557188 0.081249821 168.6631681 1.058933522 1.810834158 21.75084432 0.1 1 -1.082289131 QSELSAEES(ph)PEKLGTSQLHR ddPTM_HeLa_A486_30min_R1 3 QSELSAEESPEKLGTSQLHR 20 1 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 1 0 QSELSAEES(1)PEKLGTSQLHR;QSELSAEES(1)PEKLGTSQLHR;QSELSAEES(1)PEKLGTSQLHR ;; 266.98 2.19E-59 2346450000 867110 774920 463890 156406 844220 860900 1218820 1089160 658210 966510 TRUE FALSE FALSE 806330.0668 713512.517 643520.6314 364121.0723 738330.0556 754690.911 913858.3446 841182.0442 715264.1728 724489.6051 1.112962921 0.984848522 0.888239979 0.502589782 1.019103725 1.041686321 1.261382273 1.16106848 0.987266301 1 19.46660546 -5.989392527 24.99986054 1.102080659 0.86629411 0.285677909 0.16240996 280.6178548 661360.1432 0.05367352 0.06080311 1.02E-06 5.989392527 -0.235786549 QSETVDQNS(ph)DSDEMLAILK ddPTM_HeLa_A485_30min_R1 2 QSETVDQNSDSDEMLAILK 19 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QS(0.015)ET(0.089)VDQNS(0.448)DS(0.448)DEMLAILK;QS(0.008)ET(0.037)VDQNS(0.477)DS(0.477)DEMLAILK ; 70.942 0.0038898 70783000 74693 70428 64148 85475 94826 79773 113782 108464 68982 119782 TRUE FALSE FALSE 91308.20016 78663.94196 87879.01462 90144.28282 85384.79049 83949.79093 89471.54619 81863.03394 82826.05466 89922.55182 1.015409353 0.874796593 0.977274475 1.0024658 0.949537004 0.933578832 0.99498451 0.910372674 0.92108212 1 16.45639536 -7.273058637 24.89139039 0.936795555 0.960838171 0.031885797 0.044000935 2377.945859 5094134.224 0.023031827 0.011208969 5.33E-08 7.273058637 0.024042615 QSETVDQNS(ph)DSDEMLAILK ddPTM_HeLa_A486_30min_R1 2 QSETVDQNSDSDEMLAILK 19 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QSETVDQNS(0.808)DS(0.191)DEMLAILK;QS(0.022)ET(0.111)VDQNS(0.434)DS(0.434)DEMLAILK ; 116.13 2.39E-05 69951000 68784 72744 51647 29442 79607 79168 95677 94932 71225 91830 TRUE FALSE FALSE 63962.5968 66979.50051 71646.10155 68542.46392 69621.94775 69401.05708 71737.60263 73318.05595 77398.84035 68835.17029 0.929213897 0.973041836 1.040835684 0.995747721 1.011429876 1.008220896 1.042164962 1.06512493 1.124408351 1 16.07085826 -1.381153653 0.339878137 1.057697721 4.38E-11 0.513207158 0.03523288 38.27972368 0.694754832 0.032101082 24.61461998 0.041576349 1.381153653 -1.057697721 QSFDDNDS(ph)EELEDKDSK ddPTM_HeLa_A485_30min_R1 4 QSFDDNDSEELEDKDSK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK ;;; 260.41 6.89E-52 8367690000 5486570 3180110 2027260 11930820 5038960 4989240 10253880 8503590 3457240 15765300 TRUE FALSE FALSE 6707038.568 3551996.201 2777227.835 12582570.49 4537263.45 5250468.892 8063054.772 6418071.219 4151076.356 11835300.85 0.566697767 0.300118793 0.234656294 1.063139049 0.383366972 0.443627835 0.681271636 0.542282051 0.350736868 1 23.49659304 -11.25910432 2.312059346 2.945825701 0.510181011 0.301795991 0.224773842 23108635.35 3043280.824 235887299.5 0.058056341 5.51E-12 11.25910432 -2.43564469 QSFDDNDS(ph)EELEDKDSK ddPTM_HeLa_A486_30min_R1 3 QSFDDNDSEELEDKDSK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK;QSFDDNDS(1)EELEDKDSK ;; 237.95 1.38E-42 7868900000 2868820 2495030 789386 2622480 1937950 3354270 4973000 4320040 1753147 6701100 TRUE FALSE FALSE 2667730.533 2297314.736 1095057.4 6105265.973 1694874.24 2940454.271 3728702.801 3336461.198 1905111.194 5023100.943 0.53109236 0.457349904 0.218004259 1.215437643 0.337415923 0.585386259 0.742310944 0.664223402 0.37926994 1 22.26014684 -11.6293455 2.094026625 9.798965598 0.576811775 0.195164846 0.261607485 6398782.865 251277.5752 268930625.2 0.064442517 2.35E-12 11.6293455 -9.222153823 QSFTMVADT(ph)PENLR ddPTM_HeLa_A485_30min_R1 6 QSFTMVADTPENLR 14 0 Q14847;C9J9W2;Q14847-2;F6S2S5 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR ;;;;; 352.06 2.34E-94 4745890000 2276590 2919990 2768010 2325680 4037260 2639560 2932990 3545800 2350720 2985930 TRUE FALSE FALSE 2783009.591 3261457.43 3792012.086 2452726.009 3635296.219 2777763.28 2306332.726 2676186.99 2822487.942 2241592.603 1.241532287 1.454973319 1.691659796 1.094189018 1.621747062 1.239191848 1.028881307 1.193877508 1.259144029 1 21.09609267 -6.512122573 22.90209945 1.13626129 1.420703321 0.400064716 0.173850992 180.4034659 384120.0515 0.061596043 0.051011545 3.08E-07 6.512122573 0.284442031 QSFTMVADT(ph)PENLR ddPTM_HeLa_A486_30min_R1 6 QSFTMVADTPENLR 14 0 Q14847;C9J9W2;Q14847-2;F6S2S5 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFT(0.001)MVADT(0.999)PENLR ;;;;; 373.79 7.50E-109 5381523000 2950915 3120699 2606663 1138777 3801740 2928000 3280680 3322250 2374608 2878486 TRUE FALSE FALSE 2744071.097 2873403.446 3616032.722 2651130.407 3324890.319 2566773.13 2459819.165 2565846.199 2580440.933 2157694.37 1.27176079 1.331700859 1.675878091 1.228686715 1.540945912 1.189590688 1.140022053 1.189161095 1.195925136 1 21.0410591 -6.393386753 6.051960911 1.149646635 1.409479133 0.509479208 0.131315926 0.20651339 9.303626839 0.0454692 0.039893621 4.04E-07 6.393386753 0.259832498 QSGLSSLVNGKS(ph)PIR ddPTM_HeLa_A485_30min_R1 2 QSGLSSLVNGKSPIR 15 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 QSGLSSLVNGKS(1)PIR;QSGLSSLVNGKS(1)PIR ; 210.61 4.30E-26 3896600000 1545710 1758730 1319410 1863070 2301700 2068210 3062800 3297500 1565810 2669000 TRUE FALSE FALSE 1889547.857 1964398.175 1807514.664 1964844.797 2072534.666 2176498.278 2408407.759 2488782.955 1880053.705 2003667.419 0.943044658 0.980401316 0.902103137 0.980624218 1.034370598 1.086257258 1.201999761 1.242113801 0.938306271 1 20.93421163 -5.969705432 1.955834228 1.116419697 0.946378886 0.374127126 0.085160903 0.317498874 2.459449776 0.03120912 0.035013305 1.07E-06 5.969705432 -0.170040812 QSGLSSLVNGKS(ph)PIR ddPTM_HeLa_A486_30min_R1 2 QSGLSSLVNGKSPIR 15 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 QSGLSSLVNGKS(1)PIR;QSGLSSLVNGKS(1)PIR ; 273.8 1.74E-58 5424000000 2176900 2004740 1262660 845110 2237190 2232430 2839000 2822300 1576110 2798000 TRUE FALSE FALSE 2024310.552 1845877.101 1751595.767 1967458.789 1956580.769 1957015.484 2128652.172 2179723.9 1712728.484 2097362.588 0.965169572 0.880094416 0.835142086 0.938063261 0.932876738 0.933084005 1.014918538 1.039268991 0.816610582 1 21.00014486 -5.923237822 1.60295962 0.967193656 0.894806037 0.149760986 0.064816219 0.659813502 3.485192757 0.024953654 0.0294538 1.19E-06 5.923237822 -0.07238762 QSGT(ph)PPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR ddPTM_HeLa_A485_30min_R1 2 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 38 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 QS(0.001)GT(0.999)PPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR;QS(0.012)GT(0.988)PPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR ; 119.53 1.34E-05 335800000 6990.7 14588.1 7538.8 3044.9 6994.9 5168.4 19018.4 28448 17267.9 14436.9 TRUE FALSE FALSE 8545.757097 16294.0514 10327.71584 3211.235177 6298.463195 5439.009432 14954.96347 21471.0834 20733.40914 10838.04652 0.788496071 1.503412203 0.952913038 0.296292802 0.581143768 0.501844075 1.379857841 1.981084262 1.913020866 1 13.40381712 -6.94277793 5.039912814 1.70778535 0.785660143 0.503848035 0.390848829 0.163061452 8.548648022 0.18105609 0.118706698 1.14E-07 6.94277793 -0.922125208 QSGTPPGMGAPGVPGAAGVGGAGGREPSTAS(ph)GGGQLNR ddPTM_HeLa_A485_30min_R1 1 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 38 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 QSGTPPGMGAPGVPGAAGVGGAGGREPS(0.042)T(0.042)AS(0.915)GGGQLNR 93.088 3.17E-05 331700000 41110 55584 51652 41273 60046 46818 52226 65925 42144 49179 TRUE FALSE FALSE 50254.77767 62084.06528 70760.22422 43527.63948 54067.60941 49269.31809 41067.48845 49756.79038 50601.91423 36919.58037 1.361195798 1.68160268 1.916604238 1.178985217 1.464469771 1.33450374 1.112349817 1.347707365 1.370598304 1 15.17209853 -5.277287076 24.98755903 1.27853638 1.6559811 0.502191926 0.179319228 656.1021907 1034495.367 0.050181841 0.074710737 5.28E-06 5.277287076 0.377444721 QSGTPPGMGAPGVPGAAGVGGAGGREPSTAS(ph)GGGQLNR ddPTM_HeLa_A486_30min_R1 2 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 38 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 QSGTPPGMGAPGVPGAAGVGGAGGREPS(0.006)T(0.015)AS(0.978)GGGQLNR;QSGTPPGMGAPGVPGAAGVGGAGGREPS(0.003)T(0.002)AS(0.995)GGGQLNR ; 205.38 5.33E-30 717180000 57870.8 71462 54526 23100.2 72146 63840.8 66547 76731 47040 62836 TRUE FALSE FALSE 53814.35577 65799.09086 75639.92746 53778.43302 63096.77595 55964.77118 49896.23674 59261.02633 51117.46507 47101.45661 1.142519991 1.396965096 1.605893595 1.141757323 1.339592881 1.188174957 1.059335323 1.258156978 1.085262936 1 15.52348406 -6.204608466 1.165983015 1.112658851 1.360140219 0.364389733 0.138424306 0.54686589 1.540499738 0.070166695 0.066610726 6.24E-07 6.204608466 0.247481368 QSHAASAAPQAS(ph)SPPDYTMAWAEYYR ddPTM_HeLa_A485_30min_R1 1 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QSHAASAAPQAS(0.695)S(0.305)PPDYTMAWAEYYR 212.17 4.88E-29 259440000 66008 110080 122540 77726 127400 88846 113050 137130 101980 120040 TRUE FALSE FALSE 80691.25188 122952.8984 167872.6453 81971.97457 114715.6087 93497.83918 88895.94397 103498.6525 122446.4506 90116.23717 0.895413018 1.364381185 1.862845704 0.909624915 1.272973798 1.037524891 0.986458676 1.14850171 1.358761245 1 16.45949945 QSHAASAAPQAS(ph)SPPDYTMAWAEYYR ddPTM_HeLa_A486_30min_R1 2 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QSHAASAAPQAS(0.582)S(0.418)PPDYTMAWAEYYR;QSHAASAAPQAS(0.597)S(0.401)PPDY(0.001)TMAWAEYYR ; 133.15 3.53E-06 686250000 202386 224621 208183 39699 269140 198476 221828 240834 210719 186240 TRUE FALSE FALSE 188199.7865 206821.2139 288797.0329 92421.27828 235381.9516 173990.0491 166324.2881 186001.3556 228984.2926 139604.2918 1.348094562 1.481481774 2.068683056 0.662023188 1.686065296 1.246308741 1.191398101 1.332346973 1.640238202 1 17.09098377 -5.242513877 24.99440995 1.280469117 1.617625871 0.219795945 0.325807837 1408.545116 1860226.097 0.085265139 0.147370219 5.72E-06 5.242513877 0.337156754 QSHAASAAPQASS(ph)PPDYTMAWAEYYR ddPTM_HeLa_A485_30min_R1 5 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QSHAASAAPQAS(0.081)S(0.919)PPDYTMAWAEYYR;QSHAASAAPQAS(0.028)S(0.972)PPDYTMAWAEYYR;QSHAASAAPQAS(0.027)S(0.973)PPDYTMAWAEYYR;QSHAASAAPQAS(0.026)S(0.974)PPDYTMAWAEYYR;QSHAASAAPQAS(0.012)S(0.988)PPDYTMAWAEYYR ;;;; 270.23 2.02E-63 2422110000 476068 689170 691080 419413 814080 572580 695610 774360 598320 626460 TRUE FALSE FALSE 581967.6842 769762.4365 946739.2502 442324.4702 733027.3368 602559.4034 546987.2409 584446.9959 718397.3359 470295.0511 1.237452282 1.636764909 2.013075085 0.940525462 1.558654158 1.281236964 1.1630725 1.242724104 1.527546025 1 18.84320663 -5.266989127 24.99979033 1.26612357 1.62986417 0.323091755 0.253580888 553.7603064 2494509.823 0.069782489 0.106857697 5.41E-06 5.266989127 0.3637406 QSHAASAAPQASS(ph)PPDYTMAWAEYYR ddPTM_HeLa_A486_30min_R1 3 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QSHAASAAPQAS(0.04)S(0.96)PPDYTMAWAEYYR;QSHAASAAPQAS(0.249)S(0.751)PPDYTMAWAEYYR;QSHAASAAPQAS(0.082)S(0.918)PPDYTMAWAEYYR ;; 241.37 1.31E-49 2057480000 835950 926560 774380 115377 1049500 772140 917750 916010 810760 710060 TRUE FALSE FALSE 777354.2219 853136.0111 1074240.675 268603.4868 917861.9238 676881.2173 688119.243 707454.5194 881037.3296 532256.3543 1.460488382 1.602866747 2.018276843 0.504650597 1.724473398 1.271720313 1.292834247 1.329161247 1.655287574 1 19.02176174 QSHSES(ph)PSLQSK ddPTM_HeLa_A485_30min_R1 10 QSHSESPSLQSK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QSHS(0.001)ES(0.999)PSLQSK;QSHSES(1)PSLQSK;QSHS(0.002)ES(0.92)PS(0.078)LQSK;QSHSES(1)PSLQSK;QSHS(0.013)ES(0.987)PSLQSK;QSHSES(1)PSLQSK;QSHSES(0.997)PS(0.003)LQSK;QSHSES(1)PSLQSK;QSHSES(1)PSLQSK;QSHS(0.001)ES(0.997)PS(0.002)LQSK ;;;;;;;;; 298.7 6.69E-50 34939150000 6974920 7637480 5688840 7541470 9309760 8312370 11100670 12434240 6686440 10202340 TRUE FALSE FALSE 8526466.891 8530616.849 7793378.648 7953441.41 8382847.606 8747592.84 8728921.17 9384723.144 8028347.176 7659084.398 1.113248849 1.113790684 1.017533982 1.038432402 1.094497354 1.142119917 1.139682071 1.225306141 1.048212392 1 22.86874051 -6.025539005 5.871290908 1.126306241 1.069478087 0.057646872 0.063112319 0.353728188 39.99937327 0.020370401 0.021241565 9.43E-07 6.025539005 -0.056828153 QSHSES(ph)PSLQSK ddPTM_HeLa_A486_30min_R1 9 QSHSESPSLQSK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QSHSES(0.865)PS(0.135)LQSK;QSHSES(1)PSLQSK;QSHSES(1)PSLQSK;QSHSES(0.999)PS(0.001)LQSK;QSHSES(1)PSLQSK;QSHSES(1)PSLQSK;QSHSES(0.999)PS(0.001)LQSK;QSHSES(0.906)PS(0.094)LQSK;QS(0.003)HSES(0.995)PS(0.002)LQSK ;;;;;;;; 304.86 2.24E-50 14637258000 6660820 6415130 3825420 2009050 6713390 6474630 7925350 7784470 5208040 7469990 TRUE FALSE FALSE 6193930.915 5906771.735 5306725.072 4677169.932 5871334.026 5675855.98 5942343.604 6012116.115 5659477.101 5599455.883 1.106166571 1.054883164 0.947721561 0.835290076 1.048554386 1.0136442 1.0612359 1.073696488 1.010719116 1 22.41685521 QSHSGS(ph)IS(ph)PYPK ddPTM_HeLa_A485_30min_R1 2 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QSHS(0.011)GS(0.987)IS(0.998)PY(0.003)PK;QSHS(0.038)GS(0.962)IS(0.991)PY(0.009)PK ; 123.92 9.57E-05 1246970000 1357620 1114450 960580 2170940 1587000 1302450 2031620 1559540 1153180 2762800 TRUE FALSE FALSE 1659617.885 1244775.233 1315938.515 2289532.955 1428992.708 1370644.268 1597547.79 1177060.37 1384612.648 2074084.806 0.800168769 0.600156382 0.634467073 1.103876249 0.688975062 0.660842924 0.770242271 0.567508313 0.667577644 1 20.98404345 QSHSGS(ph)IS(ph)PYPK ddPTM_HeLa_A486_30min_R1 1 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QSHS(0.002)GS(0.998)IS(0.99)PY(0.01)PK 142.54 4.80E-07 756160000 1181200 1242300 525980 533470 1072400 1445400 1644900 1426100 987220 1964000 TRUE FALSE FALSE 1098403.98 1143855.624 729653.5422 1241945.12 937889.5923 1267081.244 1233328.622 1101408.162 1072793.024 1472201.617 0.746096165 0.776969412 0.495620664 0.843597172 0.637065998 0.860671004 0.837744374 0.74813677 0.728699801 1 20.48954383 -6.268129726 24.94724553 0.819477313 0.700790859 0.266557468 0.110613804 826.1970415 3080750.801 0.037494024 0.033809362 5.39E-07 6.268129726 -0.118686453 QSHSGSIS(ph)PYPK ddPTM_HeLa_A485_30min_R1 8 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGS(0.007)IS(0.993)PYPK;QSHSGS(0.001)IS(0.999)PYPK ;;;;;;; 190.24 2.44E-13 40650940000 18018700 15667580 12989380 23692200 21560400 15307030 24509200 19042200 15665420 32138300 TRUE FALSE FALSE 22026897.65 17499767.19 17794692.2 24986444.89 19413770.87 16108482.42 19272609.2 14372070.59 18809326.1 24126813.27 0.912963407 0.725324434 0.737548386 1.035629721 0.804655412 0.667658934 0.798804591 0.595688723 0.779602589 1 24.52413404 -6.006616816 24.99781525 0.744004001 0.846097224 0.071856915 0.128215786 671.4938266 2536862.684 0.039626357 0.043331496 9.85E-07 6.006616816 0.102093222 QSHSGSIS(ph)PYPK ddPTM_HeLa_A486_30min_R1 8 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QSHSGS(0.001)IS(0.999)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGS(0.001)IS(0.998)PYPK;QSHSGS(0.001)IS(0.999)PYPK;QSHSGS(0.001)IS(0.999)PYPK;QSHS(0.002)GS(0.014)IS(0.984)PYPK ;;;;;;; 151.04 8.61E-08 44693760000 14298200 14770700 7652850 3240310 13057200 15644000 18576200 16962500 12066940 17105100 TRUE FALSE FALSE 13295970.02 13600215.94 10616238.47 7543605.436 11419444.22 13714002.34 13928238.28 13100509.04 13112912.08 12821871.62 1.036975756 1.060704423 0.827978846 0.588338868 0.890622255 1.069578821 1.086287454 1.021731415 1.022698749 1 23.61210353 -6.225196422 7.013674278 1.044315687 0.871111421 0.293901527 0.122849252 0.320327916 50.2338114 0.046231711 0.045683964 5.95E-07 6.225196422 -0.173204266 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMK(ac)K ddPTM_HeLa_A485_30min_R1 1 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMKK 35 3 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 QSKPVTTPEEIAQVATISANGDK(0.155)EIGNIISDAMK(0.845)K 61.941 0.0018489 5414000 3949.7 2077.9 1548.8 6892.2 4299.4 4304.7 8057.4 5907 2971.1 13017 FALSE TRUE FALSE 4828.297139 2320.89233 2121.765571 7268.703434 3871.33664 4530.087436 6335.870667 4458.298988 3567.372517 9772.10146 0.494089952 0.237501866 0.2171248 0.743821937 0.396162141 0.463573516 0.648363169 0.456227251 0.365056844 1 13.25445313 -14 0.229077854 3.90645464 0.386639488 0.531256318 0.155009971 131.2712473 1.314374591 177.1409101 0.281069375 1.00E-14 14 -3.519815152 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMK(ac)K ddPTM_HeLa_A486_30min_R1 1 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMKK 35 3 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 QSKPVTTPEEIAQVATISANGDK(0.001)EIGNIISDAMK(0.999)K 97.437 1.00E-06 5803700 2458.7 3413.8 2077.6 1815.4 4214.8 5259.3 6401.4 5543.6 3513.3 5289.1 FALSE TRUE FALSE 2286.357827 3143.278055 2882.10236 4226.342945 3686.140483 4610.461039 4799.702013 4281.443296 3817.835673 3964.674934 0.576682292 0.792821129 0.726945439 1.065999865 0.929745955 1.162885007 1.210616783 1.079897688 0.962963102 1 11.95298687 -5.086322076 1.097311944 1.087801529 0.609006919 0.74827826 0.095256052 0.311841464 0.658167026 0.034343892 0.125987115 8.20E-06 5.086322076 -0.47879461 QSLFDS(ph)CK ddPTM_HeLa_A485_30min_R1 1 QSLFDSCK 8 0 Q8N697 Q8N697 SLC15A4 Solute carrier family 15 member 4 1 0 QSLFDS(1)CK 71.555 0.00961 0 143510 116860 88925 215310 143950 128050 234910 207820 113960 325680 TRUE FALSE FALSE 175433.3044 130525.7605 121822.058 227071.8401 129617.8326 134754.5 184719.5595 156851.8192 136830.7267 244493.9697 0.717536325 0.533860858 0.498262015 0.928742089 0.53014736 0.551156743 0.755517855 0.641536555 0.559648677 1 17.89943936 -10.8554041 2.840676273 1.141770852 0.634954379 0.427715127 0.126606508 25957000.75 19446128.74 24962684.73 0.03130863 1.40E-11 10.8554041 -0.506816472 QSLGELIGTLNAAK ddPTM_HeLa_A485_30min_R1 1 QSLGELIGTLNAAK 14 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 124.3 0.00076498 0 8243 8866 8493.9 11952 13581 9956.3 12263 12990 8785.7 16408 FALSE FALSE TRUE 10076.62691 9902.801576 11636.14707 12604.9075 12228.82795 10477.59647 9642.909871 9804.182132 10548.9094 12317.78757 0.818054935 0.803943202 0.9446621 1.023309375 0.992777955 0.850607012 0.782844307 0.795936939 0.856396439 1 13.58845553 -6.491297326 23.31575756 0.838208659 0.918177149 0.090779033 0.084706973 572.0716339 422346.2729 0.032062842 0.028237945 3.23E-07 6.491297326 0.07996849 QSLGES(ph)PR ddPTM_HeLa_A485_30min_R1 4 QSLGESPR 8 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 QSLGES(1)PR;QSLGES(1)PR;QS(0.001)LGES(0.999)PR;QSLGES(1)PR ;;; 116.6 0.00092877 6251120000 4887100 6625670 5619130 4940690 7433840 6023360 7068190 8128210 5501640 6650430 TRUE FALSE FALSE 5974218.535 7400484.471 7697880.019 5210587.384 6693700.788 6338733.816 5558013.465 6134753.753 6605768.684 4992600.193 1.19661465 1.482290627 1.541857894 1.043662056 1.340724378 1.26962576 1.11325026 1.228769282 1.323111891 1 22.25135995 -13.99999993 0.064986847 0.000110857 1.673651212 0.287264689 0.141272513 447.217889 2.103882381 69.02923477 9.928261292 1.00E-14 13.99999993 1.673540355 QSLGES(ph)PR ddPTM_HeLa_A486_30min_R1 3 QSLGESPR 8 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 QSLGES(1)PR;QSLGES(1)PR;QSLGES(1)PR ;; 131.17 0.00053897 5403730000 6421890 7168550 5950150 2065726 8154070 6503390 7496550 7448900 6165170 7070040 TRUE FALSE FALSE 5971748.674 6600487.991 8254207.431 4809114.524 7131310.507 5701067.863 5620833.9 5752948.078 6699571.9 5299655.966 1.126818177 1.245455938 1.557498729 0.907439003 1.345617631 1.075743011 1.060603544 1.085532366 1.264152229 1 22.33746728 -5.270030521 24.99998264 1.116031674 1.303477453 0.268597236 0.153737173 887.0841671 2581388.589 0.042169188 0.063696032 5.37E-06 5.270030521 0.187445779 QSLPAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 QSLPASPR 8 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QSLPAS(1)PR 82.912 0.0069508 349050000 203460 219210 197340 62558 236760 184640 216570 214230 201730 212910 TRUE FALSE FALSE 189198.5047 201839.0013 273755.3329 145638.1855 207063.3531 161860.9941 162381.8954 165454.5056 219216.1188 159595.9502 1.185484371 1.264687487 1.715302504 0.912543115 1.297422352 1.014192364 1.01745624 1.036708672 1.373569433 1 17.28406452 -5.283164801 24.99989464 1.096727351 1.376111162 0.349003573 0.184581393 895.1017238 1030010.096 0.051154535 0.075950984 5.21E-06 5.283164801 0.27938381 QSLS(ph)PMSQRPVLK ddPTM_HeLa_A485_30min_R1 4 QSLSPMSQRPVLK 13 1 Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4;Q9NSV4-1 Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 1 0 QSLS(0.867)PMS(0.133)QRPVLK;QSLS(0.998)PMS(0.002)QRPVLK;QSLS(0.999)PMS(0.001)QRPVLK;QSLS(0.999)PMS(0.001)QRPVLK ;;; 179.46 2.37E-17 5676960000 4536160 5007230 3918440 4641360 6298510 5177330 6622320 7650400 4347640 6234250 TRUE FALSE FALSE 5545213.142 5592781.991 5368034.016 4894905.744 5671408.229 5448406.993 5207407.233 5774127.405 5220171.469 4680166.208 1.184832524 1.194996447 1.146975081 1.045882887 1.211796329 1.164148184 1.112654338 1.233744091 1.115381642 1 22.15812833 -8.01726806 24.05996847 0.999999996 1.159708399 0.485467411 0.05042131 582.7400264 811944.8809 0.048605804 0.012549965 9.61E-09 8.01726806 0.159708403 QSLS(ph)PMSQRPVLK ddPTM_HeLa_A486_30min_R1 4 QSLSPMSQRPVLK 13 1 Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4;Q9NSV4-1 Q9NSV4-7 DIAPH3 Protein diaphanous homolog 3 1 0 QSLS(1)PMSQRPVLK;QSLS(0.656)PMS(0.344)QRPVLK;QSLS(1)PMSQRPVLK;QS(0.002)LS(0.956)PMS(0.041)QRPVLK ;;; 230.82 2.68E-28 8522570000 4499640 4422430 3123610 1618530 4800310 4204260 5147430 4922940 3545270 4801320 TRUE FALSE FALSE 4184238.472 4071980.541 4333155.445 3768019.636 4198210.359 3685581.147 3859488.57 3802094.029 3852576.858 3599038.221 1.162599066 1.131407974 1.203975946 1.046951826 1.166481182 1.024046126 1.072366653 1.056419464 1.07044622 1 21.77917999 -5.360388627 0.247671723 0.999365179 1.246427463 0.552796439 0.043250398 4.328725846 0.368303962 0.069514087 0.325353514 4.36E-06 5.360388627 0.247062284 QSMAFSILNT(ph)PK ddPTM_HeLa_A485_30min_R1 4 QSMAFSILNTPK 12 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QSMAFSILNT(1)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK ;;; 257.48 1.27E-32 4027968000 1507561 1356144 927680 2157410 1841130 1573385 2484810 2420190 1069714 2593850 TRUE FALSE FALSE 1842912.743 1514733.244 1270867.436 2275263.845 1657820.633 1655765.006 1953910.044 1826634.608 1284395.788 1947250.931 0.946417698 0.777882922 0.652646978 1.168449227 0.851364663 0.850309007 1.003419751 0.938058151 0.659594389 1 20.89300738 -5.215481417 24.99980672 0.919031378 0.790872703 0.156609146 0.140116799 845.5473931 459952.0369 0.037576763 0.065084504 6.09E-06 5.215481417 -0.128158674 QSMAFSILNT(ph)PK ddPTM_HeLa_A486_30min_R1 7 QSMAFSILNTPK 12 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QSMAFS(0.002)ILNT(0.998)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK;QSMAFSILNT(1)PK ;;;;;; 228.9 1.02E-22 5092854000 3262435 2796855 1462288 1604672 2592619 3014590 3973680 3746430 2126018 4536230 TRUE FALSE FALSE 3033755.154 2575222.024 2028525.075 3735757.512 2267428.55 2642680.536 2979423.235 2893449.673 2310302.952 3400328.482 0.892194731 0.757345073 0.596567386 1.098646066 0.666826326 0.777183896 0.876216298 0.850932399 0.679435226 1 21.69724269 -10.13348515 3.687316495 1.000125685 0.800287049 0.165758706 0.134941367 172086218.7 322439891.1 268145.2248 0.032359218 7.35E-11 10.13348515 -0.199838637 QSMAFSILNT(ph)PKK ddPTM_HeLa_A485_30min_R1 1 QSMAFSILNTPKK 13 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QSMAFSILNT(1)PKK 120.24 8.21E-05 183270000 158630 152400 114220 220810 205110 178010 306830 289800 128460 276680 TRUE FALSE FALSE 193916.6962 170221.8543 156474.7311 232872.2912 184688.5282 187330.3283 241273.2639 218726.0956 154240.7437 207708.7679 0.933598991 0.819521756 0.753337149 1.121148103 0.889170592 0.901889363 1.161594026 1.053042189 0.742581766 1 17.66420259 -5.247615899 24.97603942 0.9839156 0.83388955 0.234066536 0.120840239 1167.875041 2110094.717 0.03309991 0.05694474 5.65E-06 5.247615899 -0.150026051 QSMAFSILNT(ph)PKK ddPTM_HeLa_A486_30min_R1 1 QSMAFSILNTPKK 13 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QSMAFSILNT(1)PKK 125.73 2.57E-05 312520000 210990 192180 155220 133350 251970 220610 293050 281760 186120 317920 TRUE FALSE FALSE 196200.6906 176950.9569 215325.3409 310445.5391 220365.5731 193393.3812 219725.7904 217609.3988 202253.0315 238310.7627 0.823297649 0.742521886 0.903548537 1.302692063 0.924698367 0.811517613 0.92201371 0.913132904 0.848694491 1 17.86248458 -4.918351729 6.188202478 0.958747195 0.787666979 0.231977404 0.127267868 0.319863871 19.11274778 0.035905138 0.076193886 1.21E-05 4.918351729 -0.171080216 QSMDMS(ph)PIK ddPTM_HeLa_A485_30min_R1 4 QSMDMSPIK 9 0 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 1 0 QSMDMS(1)PIK;QSMDMS(1)PIK;QSMDMS(1)PIK;QSMDMS(1)PIK ;;; 187.78 2.09E-08 5690100000 7125430 6197840 5072120 10359000 8348700 6931800 10839600 9233500 6192930 13492700 TRUE FALSE FALSE 8710457.321 6922623.474 6948508.257 10924885.94 7517474.114 7294738.329 8523630.909 6968969.647 7435794.246 10129218.2 0.859933822 0.683431172 0.68598663 1.078551742 0.742157387 0.720167952 0.841489514 0.688006666 0.734093599 1 23.27201949 -11.25595218 2.299949717 1.851081152 0.780624899 0.244039177 0.115341202 10068486.59 1711581.452 44552760.68 0.030711157 5.55E-12 11.25595218 -1.070456253 QSMDMS(ph)PIK ddPTM_HeLa_A486_30min_R1 4 QSMDMSPIK 9 0 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 1 0 QSMDMS(1)PIK;QSMDMS(1)PIK;QSMDMS(1)PIK;QSMDMS(1)PIK ;;; 171.62 5.25E-06 6287800000 7546180 7028830 3917710 3164090 6507320 7603350 9787400 8848920 5552170 9970990 TRUE FALSE FALSE 7017231.751 6471839.912 5434752.232 7366161.424 5691111.247 6665325.982 7338488.999 6834214.087 6033436.566 7474189.204 0.938861937 0.865891903 0.727136026 0.985546555 0.761435266 0.891779135 0.981844157 0.914375312 0.807236264 1 22.83348565 -6.518318128 24.90002461 0.921311847 0.853420197 0.130345476 0.084993805 410.8420663 2243136.913 0.031086506 0.024716834 3.03E-07 6.518318128 -0.06789165 QSMDMS(ph)PIKIVK ddPTM_HeLa_A485_30min_R1 2 QSMDMSPIKIVK 12 1 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 1 0 QSMDMS(1)PIKIVK;QSMDMS(1)PIKIVK ; 126.63 1.89E-05 1962890000 816410 1585110 649220 548660 1674280 2237900 3186800 5453800 834430 820180 TRUE FALSE FALSE 998017.5879 1770474.826 889393.4943 578631.9065 1507582.804 2355072.984 2505914.146 4116246.999 1001892.447 615724.2203 1.620884083 2.87543476 1.444467287 0.939758235 2.448470849 3.824882806 4.0698645 6.685212085 1.627177256 1 19.23192479 -6.144832024 3.567972829 3.840617112 1.775358028 0.198721867 1.523755424 0.322818591 7.510580151 0.511104386 0.511866634 7.16E-07 6.144832024 -2.065259084 QSMDMS(ph)PIKIVK ddPTM_HeLa_A486_30min_R1 2 QSMDMSPIKIVK 12 1 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 1 0 QSMDMS(1)PIKIVK;QSMDMS(1)PIKIVK ; 148.7 7.22E-08 897360000 1323980 673060 492790 608440 1426660 787080 1592450 1675920 525650 1781750 TRUE FALSE FALSE 1231175.839 619724.2744 683611.4854 1416479.069 1247715 689978.072 1194002.167 1294349.601 571213.7652 1335588.203 0.921822937 0.464008497 0.51184301 1.060565724 0.934206365 0.516609888 0.893989752 0.969123266 0.42768704 1 20.34904382 -11.40508969 2.217729635 2.990272431 0.748526948 0.100395966 0.22921443 28162645.07 2824576.58 281066748.2 0.060403679 3.93E-12 11.40508969 -2.241745483 QSMWSLLTALSGK ddPTM_HeLa_A485_30min_R1 2 QSMWSLLTALSGK 13 0 E9PHA2;Q15003;Q15003-2;H7C415 E9PHA2 NCAPH Condensin complex subunit 2 0 0 ; ; 238.13 2.88E-29 10782200 21936 22843 20033.9 23053 33358 23274 32407 33542 18407.3 33929 FALSE FALSE TRUE 26815.58752 25514.29014 27445.27329 24312.32702 30036.76039 24492.59065 25482.97971 25315.77191 22101.47627 25471.12472 1.052783802 1.001694681 1.077505355 0.954505437 1.17924751 0.961582613 1.000465429 0.993900827 0.86770712 1 14.63657505 QSMWSLLTALSGK ddPTM_HeLa_A486_30min_R1 2 QSMWSLLTALSGK 13 0 E9PHA2;Q15003;Q15003-2;H7C415 E9PHA2 NCAPH Condensin complex subunit 2 0 0 ; ; 268.08 1.43E-50 14884900 30370 32169 22112 11944.2 33524 31722 40727 37393 29015 36541 FALSE FALSE TRUE 28241.21983 29619.81128 30674.35858 27806.70123 29319.10732 27808.46217 30536.67383 28879.43018 31530.04356 27390.89576 1.03104404 1.08137432 1.11987424 1.015180426 1.070396075 1.015244715 1.114847579 1.054344131 1.151113999 1 14.74140883 -6.780352122 24.9997012 1.084605082 1.058462094 0.055516942 0.047268839 747.4888106 988053.9735 0.018889313 0.012755847 1.66E-07 6.780352122 -0.026142987 QSNAS(ph)SDVEVEEKETSVSK ddPTM_HeLa_A485_30min_R1 1 QSNASSDVEVEEKETSVSK 19 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QS(0.001)NAS(0.559)S(0.441)DVEVEEKETSVSK 67.31 0.0031945 2602300000 685710 573380 601860 829750 782320 836760 1107900 1031400 658710 1258500 TRUE FALSE FALSE 838243.8238 640431.8033 824513.0595 875077.1415 704429.4739 880571.4597 871188.1143 778447.5328 790907.055 944779.111 0.887237889 0.677864059 0.872704582 0.926224057 0.745602296 0.93203951 0.922107723 0.823946596 0.837134358 1 19.84961754 -14 0.11789777 1.470890972 0.772644816 0.261375845 0.07780461 220.1810587 1.689465808 25.10396193 0.800401753 1.00E-14 14 -0.698246156 QSNASS(ph)DVEVEEK ddPTM_HeLa_A485_30min_R1 5 QSNASSDVEVEEK 13 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNASS(1)DVEVEEK;QSNAS(0.002)S(0.998)DVEVEEK;QSNAS(0.022)S(0.978)DVEVEEK;QSNAS(0.003)S(0.997)DVEVEEK;QSNAS(0.016)S(0.984)DVEVEEK ;;;; 401.71 2.12E-142 15158420000 8237500 8024470 4417100 9631350 6010630 7023300 9678770 8774290 5305610 11749280 TRUE FALSE FALSE 10069903.46 8962861.963 6051169.101 10157486.26 5412190.573 7391029.128 7610821.721 6622381.62 6370397.261 8820400.725 1.14166054 1.016151334 0.686042425 1.151590112 0.613599171 0.837947091 0.862865754 0.750802807 0.722234449 1 23.07241277 -4.570442147 5.837869971 0.825066899 1.113528758 0.327966218 0.14832481 0.17506197 13.64911263 0.03603828 0.101461348 2.69E-05 4.570442147 0.288461858 QSNASS(ph)DVEVEEK ddPTM_HeLa_A486_30min_R1 6 QSNASSDVEVEEK 13 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNASS(1)DVEVEEK;QSNAS(0.001)S(0.999)DVEVEEK;QSNASS(1)DVEVEEK;QSNASS(1)DVEVEEK;QSNAS(0.02)S(0.98)DVEVEEK;QSNAS(0.005)S(0.995)DVEVEEK ;;;;; 370.44 4.91E-109 15765820000 20699310 17694710 7605200 6513090 10738970 17163920 19515910 16558240 14167580 26660100 TRUE FALSE FALSE 19248395.26 16292516.74 10550137.11 15162802.67 9391988.246 15046410.06 14632822.9 12788290.22 15395637.24 19984237.43 0.963178872 0.815268373 0.527922927 0.758738117 0.469969809 0.752913896 0.732218227 0.639918849 0.770389028 1 24.25235919 -8.071011254 7.349218626 0.999998343 0.701389248 0.303370039 0.132598621 1.499518646 154.7266051 0.128997479 0.033386844 8.49E-09 8.071011254 -0.298609095 QSNASS(ph)DVEVEEKETSVSK ddPTM_HeLa_A485_30min_R1 3 QSNASSDVEVEEKETSVSK 19 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNAS(0.015)S(0.985)DVEVEEKETSVSK;QSNAS(0.023)S(0.977)DVEVEEKETSVSK;QS(0.002)NAS(0.158)S(0.839)DVEVEEKETSVSK ;; 244.77 4.08E-46 2267590000 707530 493550 405573 1096330 772180 693820 1160580 1015860 636510 1633950 TRUE FALSE FALSE 864917.6076 551266.3792 555611.33 1156219.732 695299.0479 730147.3424 912612.6019 766718.7422 764251.7186 1226636.336 0.705113311 0.449413052 0.452955219 0.942593741 0.566833892 0.59524353 0.743996061 0.625057908 0.623046698 1 20.22627616 -14 0.245695503 3.159958229 0.5979246 0.394558693 0.136142593 187.4977313 1.866326509 203.0270013 0.208749429 1.00E-14 14 -2.562033629 QSNASS(ph)DVEVEEKETSVSK ddPTM_HeLa_A486_30min_R1 5 QSNASSDVEVEEKETSVSK 19 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNAS(0.031)S(0.969)DVEVEEKETSVSK;QSNAS(0.023)S(0.977)DVEVEEKETSVSK;QSNAS(0.062)S(0.938)DVEVEEKETSVSK;QSNAS(0.054)S(0.946)DVEVEEKETSVSK;QSNAS(0.005)S(0.995)DVEVEEKETSVSK ;;;; 280.75 6.00E-70 6516940000 2691540 2364560 1026911 1252090 1958220 3027260 3651050 3189230 2127910 4053060 TRUE FALSE FALSE 2502876.945 2177183.654 1424558.441 2914928.797 1712601.788 2653787.44 2737518.673 2463111.949 2312358.952 3038147.395 0.823816826 0.716615546 0.468890497 0.959442851 0.563699375 0.873488707 0.901048671 0.810728259 0.761108219 1 21.53476043 -6.306421058 24.89591447 0.859431218 0.70790793 0.258671009 0.137271471 641.8742128 355254.7558 0.046804808 0.041278085 4.94E-07 6.306421058 -0.151523288 QSNASS(ph)DVEVEEKETSVSKEDTDHEEK ddPTM_HeLa_A485_30min_R1 3 QSNASSDVEVEEKETSVSKEDTDHEEK 27 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNAS(0.192)S(0.808)DVEVEEKETSVSKEDTDHEEK;QS(0.003)NAS(0.141)S(0.856)DVEVEEKETSVSKEDTDHEEK;QSNAS(0.142)S(0.858)DVEVEEKETSVSKEDTDHEEK ;; 251.11 4.37E-51 4238030000 934710 572050 329572 1814180 1158690 1046260 2394890 2385620 723510 3046630 TRUE FALSE FALSE 1142633.015 638946.2713 451494.3974 1913284.06 1043326.755 1101040.556 1883202.187 1800542.954 868711.8206 2287161.21 0.499585692 0.279362149 0.197403836 0.836532227 0.456166688 0.481400502 0.823379733 0.787239197 0.379820984 1 21.12512663 -7.229831639 0.124310784 1.284749382 2.33E-16 0.389753399 0.199530481 7.172220156 0.859683959 3.747151071 4.193822827 5.89E-08 7.229831639 -1.284749382 QSNASS(ph)DVEVEEKETSVSKEDTDHEEK ddPTM_HeLa_A486_30min_R1 2 QSNASSDVEVEEKETSVSKEDTDHEEK 27 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QS(0.011)NAS(0.315)S(0.674)DVEVEEKETSVSKEDTDHEEK;QS(0.043)NAS(0.235)S(0.723)DVEVEEKETSVSKEDTDHEEK ; 214.02 1.22E-29 2636300000 521620 416080 173316 442080 445180 656860 1191390 987240 373100 1120480 TRUE FALSE FALSE 485057.1316 383108.3055 240428.5968 1029184.581 389341.3733 575823.2917 893291.6208 762467.0033 405440.6084 839904.5149 0.577514614 0.456133166 0.28625706 1.22535903 0.463554328 0.685581851 1.063563304 0.907802006 0.482722263 1 19.6798658 -5.232966146 24.97249108 0.816927167 0.441584759 0.36265299 0.237918518 818.4192065 717794.7576 0.063754906 0.110400831 5.85E-06 5.232966146 -0.375342408 QSNASSDVEVEEKETS(ph)VSKEDTDHEEK ddPTM_HeLa_A485_30min_R1 1 QSNASSDVEVEEKETSVSKEDTDHEEK 27 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNASSDVEVEEKET(0.427)S(0.573)VSKEDTDHEEK 124.37 3.69E-06 538920000 206030 102220 62405 630510 244070 207380 411340 368400 135440 888200 TRUE FALSE FALSE 251860.6627 114173.7398 85491.20639 664953.1648 219769.5338 218238.0961 323453.8487 278049.3224 162621.5657 666788.0861 0.3777222 0.171229424 0.128213458 0.997248119 0.329594272 0.327297534 0.485092424 0.416998036 0.243887929 1 19.3468688 -11.1398974 2.402961368 2.321302404 0.390809513 0.392591261 0.228922109 42292939.23 10139073.3 304869068 0.058329285 7.25E-12 11.1398974 -1.93049289 QSNASSDVEVEEKETS(ph)VSKEDTDHEEK ddPTM_HeLa_A486_30min_R1 2 QSNASSDVEVEEKETSVSKEDTDHEEK 27 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNASSDVEVEEKET(0.14)S(0.671)VS(0.188)KEDT(0.001)DHEEK;QSNASSDVEVEEKET(0.213)S(0.287)VS(0.287)KEDT(0.213)DHEEK ; 129.9 2.49E-06 1367610000 239366 172811 46443.5 330723 165184 360714 589058 469990 147200 732790 TRUE FALSE FALSE 222587.6795 159116.827 64427.667 769939.8578 144465.0824 316212.7742 441669.458 362983.5368 159959.4145 549294.6143 0.40522458 0.289674835 0.117291642 1.401688343 0.26300109 0.575670625 0.804066609 0.660817578 0.29120878 1 19.06722062 QSNASSDVEVEEKETSVSKEDT(ph)DHEEK ddPTM_HeLa_A485_30min_R1 1 QSNASSDVEVEEKETSVSKEDTDHEEK 27 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNASSDVEVEEKET(0.004)S(0.025)VS(0.085)KEDT(0.886)DHEEK 110.13 0.00025952 632520000 159210 91887 58466 393010 152280 140190 339200 304130 118850 649360 TRUE FALSE FALSE 194625.7152 102632.3853 80095.00637 414479.1411 137118.4685 147530.1316 266727.149 229541.6406 142702.1048 487486.5026 0.39924329 0.210533799 0.164301998 0.850237163 0.281276441 0.30263429 0.547147762 0.470867684 0.292730371 1 18.89500275 -14 0.306000915 6.212171981 0.364476718 0.479757619 0.189325402 255.202438 2.338335193 855.8470301 0.187340252 1.00E-14 14 -5.847695263 QSNPKS(ph)SPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_HeLa_A485_30min_R1 1 QSNPKSSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 41 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 QSNPKS(0.657)S(0.343)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 229.83 3.00E-41 721760000 0 6362.4 0 0 6497 0 7486.9 13339 0 0 TRUE FALSE FALSE 0 7106.427334 0 0 5850.135868 0 5887.262653 10067.58934 0 0 0 QSNPKS(ph)SPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_HeLa_A486_30min_R1 1 QSNPKSSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 41 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 QSNPKS(0.701)S(0.299)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 295.92 4.16E-95 749900000 7843.6 5904.4 4741.3 3145.3 8907.6 10878 9254.4 16774 8369.4 13355 TRUE FALSE FALSE 7293.804144 5436.513841 6577.258336 7322.417355 7790.325748 9535.982959 6938.851237 12954.92637 9094.866331 10010.82107 0.728592 0.543063731 0.657014873 0.731450228 0.778190489 0.952567516 0.693135077 1.294092291 0.908503535 1 13.28927269 -6.351345726 0.752305433 1.052875357 0.624179856 0.538278934 0.139109801 0.485762561 0.592122527 0.097558637 0.087384709 4.45E-07 6.351345726 -0.428695502 QSPAS(ph)PPPLGGGAPVR ddPTM_HeLa_A485_30min_R1 2 QSPASPPPLGGGAPVR 16 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 QSPAS(1)PPPLGGGAPVR;QS(0.004)PAS(0.996)PPPLGGGAPVR ; 117.65 9.69E-05 612960000 719500 946610 567660 782740 615290 860750 1032940 1044010 645330 1310710 TRUE FALSE FALSE 879550.2928 1057307.805 777661.0563 825499.1042 554029.5672 905817.539 812243.9307 787964.9106 774841.8117 983974.1188 0.893875434 1.074528064 0.790326739 0.83894392 0.563052987 0.920570492 0.825472861 0.800798411 0.787461577 1 19.90826084 -4.777241095 24.84010964 0.804597098 0.984201746 0.256699575 0.113322812 232.6200282 365676.8907 0.028503075 0.059652565 1.67E-05 4.777241095 0.179604648 QSPAS(ph)PPPLGGGAPVR ddPTM_HeLa_A486_30min_R1 1 QSPASPPPLGGGAPVR 16 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 QS(0.075)PAS(0.925)PPPLGGGAPVR 133.86 1.08E-05 215280000 335030 337470 257580 96954 386580 346830 319840 327980 388310 510780 TRUE FALSE FALSE 311546.1271 310727.6482 357321.8742 225713.8118 338091.5317 304041.6409 239812.6491 253306.1138 421969.0235 382877.3634 0.813696909 0.811559204 0.933254113 0.589519866 0.883028259 0.794096674 0.626343242 0.661585505 1.10209969 1 18.54652284 -7.768006803 24.99953106 1.051049988 0.765901752 0.536932768 0.106569534 130.6990486 497495.7283 0.096088244 0.027113934 1.71E-08 7.768006803 -0.285148236 QSPGSTS(ph)PKPPHTLSR ddPTM_HeLa_A485_30min_R1 2 QSPGSTSPKPPHTLSR 16 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 QS(0.002)PGS(0.059)T(0.28)S(0.659)PKPPHTLSR;QSPGST(0.019)S(0.981)PKPPHTLSR ; 139.43 1.73E-06 1220250000 911420 732910 608780 1262940 1055940 764690 1093910 887750 767320 1786360 TRUE FALSE FALSE 1114162.235 818617.449 833993.0554 1331931.214 950806.906 804727.986 860187.1921 670027.9206 921314.0857 1341053.328 0.830811282 0.610428707 0.621894028 0.9931978 0.709000072 0.600071578 0.641426537 0.499628096 0.687007792 1 20.35493518 -10.02263048 5.748940542 1.00000076 0.684001309 0.339571103 0.130349588 1.33E-06 2.26E-07 0.132289801 0.032084913 9.49E-11 10.02263048 -0.315999451 QSPGSTS(ph)PKPPHTLSR ddPTM_HeLa_A486_30min_R1 1 QSPGSTSPKPPHTLSR 16 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 QSPGS(0.001)T(0.073)S(0.926)PKPPHTLSR 185.92 5.01E-18 780740000 609940 610870 374260 164010 593180 673210 758020 717420 593910 793050 TRUE FALSE FALSE 567186.3557 562462.4364 519183.495 381823.5686 518777.8332 590156.1949 568355.3785 554079.1272 645390.597 594465.1181 0.954112089 0.946165585 0.873362421 0.642297684 0.872680023 0.992751596 0.956078601 0.932063313 1.085666051 1 19.18123263 -6.221780891 5.480012667 0.986962115 0.850467465 0.369805766 0.088278532 0.249504137 20.02674788 0.032311382 0.031721871 6.00E-07 6.221780891 -0.13649465 QSQQPMKPIS(ph)PVKDPVS(ph)PASQK ddPTM_HeLa_A485_30min_R1 5 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 QSQQPMKPIS(1)PVKDPVS(0.9)PAS(0.1)QK;QS(0.007)QQPMKPIS(0.993)PVKDPVS(0.977)PAS(0.023)QK;QSQQPMKPIS(1)PVKDPVS(0.999)PAS(0.001)QK;QS(0.025)QQPMKPIS(0.974)PVKDPVS(0.837)PAS(0.164)QK;QS(0.008)QQPMKPIS(0.992)PVKDPVS(0.941)PAS(0.059)QK ;;;; 179.66 1.40E-19 7387810000 2496634 1491186 775772 5276010 2251289 2315526 5195710 4429110 1503727 7059530 TRUE FALSE FALSE 3052001.62 1665567.231 1062762.345 5564225.067 2027142.762 2436763.361 4085604.113 3342863.828 1805511.216 5299719.092 0.575879885 0.314274625 0.200531826 1.049909433 0.38250004 0.459791041 0.77090956 0.630762455 0.34068055 1 22.33748446 -14 0.205101123 3.126197816 0.460507924 0.254276418 0.238226761 208.0758501 2.067585957 182.5534833 0.545034012 1.00E-14 14 -2.665689892 QSQQPMKPIS(ph)PVKDPVS(ph)PASQK ddPTM_HeLa_A486_30min_R1 11 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 QS(0.004)QQPMKPIS(0.996)PVKDPVS(0.998)PAS(0.002)QK;QS(0.007)QQPMKPIS(0.993)PVKDPVS(0.999)PAS(0.001)QK;QSQQPMKPIS(1)PVKDPVS(1)PASQK;QSQQPMKPIS(1)PVKDPVS(1)PASQK;QS(0.001)QQPMKPIS(0.999)PVKDPVS(0.989)PAS(0.011)QK;QS(0.004)QQPMKPIS(0.996)PVKDPVS(0.995)PAS(0.005)QK;QS(0.019)QQPMKPIS(0.982)PVKDPVS(0.889)PAS(0.111)QK;QSQQPMKPIS(1)PVKDPVS(0.995)PAS(0.005)QK;QSQQPMKPIS(1)PVKDPVS(0.997)PAS(0.003)QK;QSQQPMKPIS(1)PVKDPVS(0.995)PAS(0.005)QK;QS(0.014)QQPMKPIS(0.986)PVKDPVS(0.983)PAS(0.017)QK ;;;;;;;;;; 174.89 1.38E-14 11696002000 9706110 6904367 2044043 6192317 5267323 11259377 16352540 13794720 5609615 21174370 TRUE FALSE FALSE 9025761.811 6357239.814 2835551.191 14416026.92 4606646.234 9870309.543 12260961.53 10653963.39 6095860.945 15872169.93 0.5686533 0.400527454 0.178649246 0.908258101 0.290234181 0.621862643 0.772481746 0.671235467 0.384059708 1 23.91999604 -14 0.128686675 2.504720528 0.343319063 0.30886077 0.211472367 177.9934504 1.44828946 69.51466166 1.642360182 1.00E-14 14 -2.161401464 QSQQPMKPIS(ph)PVKDPVSPASQK ddPTM_HeLa_A485_30min_R1 3 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QSQQPMKPIS(0.995)PVKDPVS(0.004)PASQK;QSQQPMKPIS(1)PVKDPVSPASQK;QSQQPMKPIS(1)PVKDPVSPASQK ;; 180.88 9.01E-20 4983020000 4082140 2343200 1343484 6936800 3595900 3845480 7818670 6968620 2619930 9502290 TRUE FALSE FALSE 4990197.96 2617216.857 1840494.639 7315739.819 3237879.57 4046823.387 6148147.282 5259555.019 3145725.92 7133543.98 0.699539804 0.366888725 0.258005648 1.025540719 0.453894947 0.567294938 0.861864355 0.737299025 0.440976593 1 22.76618756 -13.99999997 0.10390252 2.210740859 0.360019747 0.22095652 0.223378991 272.6945495 1.907662957 71.74345126 3.386101841 1.00E-14 13.99999997 -1.850721113 QSQQPMKPIS(ph)PVKDPVSPASQK ddPTM_HeLa_A486_30min_R1 3 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QS(0.001)QQPMKPIS(0.999)PVKDPVSPASQK;QS(0.002)QQPMKPIS(0.998)PVKDPVSPASQK;QS(0.003)QQPMKPIS(0.997)PVKDPVSPASQK ;; 85.489 0.0024839 3624470000 2839320 2118610 834846 1642090 1647790 3207840 4400530 3790840 1857760 5527070 TRUE FALSE FALSE 2640298.33 1950723.628 1158120.729 3822868.507 1441108.813 2812089.316 3299470.85 2927748.485 2018792.133 4143055.697 0.637282847 0.470841758 0.279532986 0.922717141 0.347837181 0.678747649 0.79638583 0.706664042 0.487271299 1 21.98226378 -14 0.128402485 2.337679459 0.421624419 0.307595804 0.187297521 177.4203399 1.44157768 61.26545521 1.458896138 1.00E-14 14 -1.91605504 QSS(ph)GASSSSFSSSR ddPTM_HeLa_A486_30min_R1 1 QSSGASSSSFSSSR 14 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 QSS(0.88)GAS(0.064)S(0.027)S(0.027)S(0.001)FSSSR 128.3 6.25E-05 0 169710 229380 259150 36831 253450 169240 157750 201800 166860 131950 TRUE FALSE FALSE 157814.2054 211203.0934 359499.8203 85744.42934 221659.9377 148360.8895 118279.2815 155854.5453 181323.5591 98908.86115 1.595551739 2.135330353 3.634657361 0.866903413 2.24105237 1.499975713 1.195841102 1.575738953 1.833238772 1 16.59381216 -5.286850259 24.99997661 1.506285849 2.423195477 0.361458274 0.604041126 855.3310176 841498.1188 0.168759202 0.250419879 5.17E-06 5.286850259 0.916909628 QSS(ph)PAMPHK ddPTM_HeLa_A486_30min_R1 2 QSSPAMPHK 9 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 QS(0.384)S(0.616)PAMPHK;QS(0.378)S(0.622)PAMPHK ; 72.652 0.0022558 45322000 221470 210610 148576 58883 225570 213600 240580 228150 199314 263010 TRUE FALSE FALSE 205946.0967 193920.4966 206108.6062 137082.5998 197276.9072 187248.2037 180384.3394 176205.2255 216590.698 197150.5841 1.04461317 0.98361614 1.045437462 0.695319268 1.000640744 0.949772503 0.914957165 0.893759591 1.098605409 1 17.58893846 -9.446431827 11.49549721 0.999999999 0.951872566 0.010088479 0.106224101 0 0 0.101142118 0.024530567 3.58E-10 9.446431827 -0.048127434 QSS(ph)PSGSEQLVR ddPTM_HeLa_A485_30min_R1 1 QSSPSGSEQLVR 12 0 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 QS(0.092)S(0.768)PS(0.046)GS(0.095)EQLVR 131.86 2.52E-05 869220000 242710 300870 284190 294340 348290 273080 306610 310830 294530 370400 TRUE FALSE FALSE 296700.0022 336054.1293 389323.7071 310419.0489 313613.0247 287378.0465 241100.2687 234598.4551 353639.4694 278066.0967 1.067012504 1.208540463 1.400112102 1.116349863 1.127836253 1.03348826 0.867061003 0.843678744 1.271782046 1 18.08506833 -6.029277577 1.843115596 0.982664881 1.217565086 0.321032549 0.134758129 0.388044958 2.64996916 0.052178149 0.056258105 9.35E-07 6.029277577 0.234900206 QSS(ph)PSGSEQLVR ddPTM_HeLa_A486_30min_R1 2 QSSPSGSEQLVR 12 0 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 QS(0.002)S(0.996)PS(0.002)GSEQLVR;QS(0.004)S(0.992)PS(0.003)GS(0.001)EQLVR ; 183.81 6.55E-13 1405350000 864740 1007450 739940 283966 972600 877820 895390 913840 798970 873780 TRUE FALSE FALSE 804126.1915 927615.9929 1026464.584 661087.1988 850607.4389 769523.4934 671353.9515 705778.581 868225.3629 654979.8006 1.227711436 1.416251298 1.567169832 1.00932456 1.298677361 1.17488126 1.024999475 1.077557782 1.325575784 1 19.32109089 -5.265839809 24.99995155 1.137881856 1.4049649 0.476451665 0.131236287 323.8157629 1839682.434 0.036530038 0.056340023 5.42E-06 5.265839809 0.267083044 QSS(ph)SEQCS(ph)DGEGR ddPTM_HeLa_A485_30min_R1 2 QSSSEQCSDGEGR 13 0 O60343-2;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 0 QSS(0.995)S(0.005)EQCS(1)DGEGR;QS(0.007)S(0.989)S(0.004)EQCS(1)DGEGR ; 248.34 4.32E-35 384800000 647450 811290 516560 856950 649790 714490 814470 932320 769950 1118450 TRUE FALSE FALSE 791473.0188 906163.3082 707657.0399 903763.0086 585094.626 751899.5916 640451.8309 703667.0582 924471.9026 839640.9985 0.942632649 1.079227086 0.842809059 1.076368365 0.696839038 0.895501283 0.76276865 0.83805705 1.101032351 1 19.67941309 -5.732177261 24.99984803 0.868945828 0.98179618 0.137049979 0.123645062 390.5472645 333659.1348 0.035494063 0.045815765 1.85E-06 5.732177261 0.112850352 QSS(ph)SEQCS(ph)DGEGR ddPTM_HeLa_A486_30min_R1 2 QSSSEQCSDGEGR 13 0 O60343-2;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 0 QSS(0.996)S(0.004)EQCS(1)DGEGR;QSS(0.994)S(0.006)EQCS(1)DGEGR ; 255.76 6.88E-41 377130000 757100 564500 630280 259390 626010 1042470 820050 747810 905570 951100 TRUE FALSE FALSE 704031.1997 519766.9641 874341.2955 603873.0288 547489.9885 913860.6505 614864.8164 577549.9876 984065.5367 712938.3694 0.987506396 0.729048942 1.226391134 0.84701996 0.767934526 1.281822791 0.862437544 0.810098057 1.380295379 1 19.44341784 -7.753096898 24.99916549 1.190147728 0.941714438 0.210092997 0.194711247 248.5884253 744938.4834 0.13126653 0.047770159 1.77E-08 7.753096898 -0.248433289 QSS(ph)SSRDDNMFQIGK ddPTM_HeLa_A485_30min_R1 1 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 QS(0.004)S(0.437)S(0.437)S(0.121)RDDNMFQIGK 112.58 9.57E-05 383750000 467450 709180 696040 378810 792680 979600 893270 1232700 730610 619930 TRUE FALSE FALSE 571432.6398 792112.432 953534.1606 399503.4311 713757.9959 1030890.341 702415.5672 930378.3922 877236.7254 465392.86 1.227850036 1.702029619 2.048880081 0.858421917 1.533667697 2.215097029 1.509295968 1.999124766 1.884938083 1 18.82808955 -6.02629277 24.84572227 1.782364072 1.478408993 0.072802544 0.418811578 1606.218681 1517815.696 0.134540473 0.134994829 9.41E-07 6.02629277 -0.303955079 QSSFEPEFVIS(ph)PRPK ddPTM_HeLa_A485_30min_R1 1 QSSFEPEFVISPRPK 15 1 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 RMI1 RecQ-mediated genome instability protein 1 1 0 QSSFEPEFVIS(1)PRPK 105.32 0.00015222 537810000 308930 345450 260130 416630 425420 343660 473620 546710 285290 533840 TRUE FALSE FALSE 377650.4127 385847.3725 356362.9119 439389.4419 383063.6911 361653.5062 372427.2179 412628.5153 342545.0862 400763.5126 0.942327335 0.962780693 0.889209972 1.096380853 0.955834748 0.90241126 0.929294225 1.029605995 0.85473122 1 18.61239164 -5.995075464 24.99174592 0.942515229 0.973518904 0.042207206 0.066083079 512.3327912 2600033.206 0.020302459 0.022942485 1.01E-06 5.995075464 0.031003675 QSSFEPEFVIS(ph)PRPK ddPTM_HeLa_A486_30min_R1 2 QSSFEPEFVISPRPK 15 1 A0A0A0MSU3;Q9H9A7 A0A0A0MSU3 RMI1 RecQ-mediated genome instability protein 1 1 0 QSSFEPEFVIS(1)PRPK;QSSFEPEFVIS(1)PRPK ; 125.73 1.28E-05 719530000 558990 492580 294330 322350 482270 511830 634860 597470 405550 642540 TRUE FALSE FALSE 519807.6876 453546.1669 408302.4584 750447.0907 421779.1996 448685.6185 476011.3131 461439.1237 440703.4005 481643.8018 1.079236742 0.941663041 0.847727007 1.558095605 0.875707729 0.931571458 0.988305697 0.95805058 0.914998592 1 18.87760707 QSSGASSSS(ph)FSSSR ddPTM_HeLa_A486_30min_R1 3 QSSGASSSSFSSSR 14 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 QSSGAS(0.059)S(0.094)S(0.094)S(0.743)FS(0.006)S(0.002)S(0.002)R;QSSGASSS(0.003)S(0.997)FSSSR;QSSGAS(0.002)S(0.002)S(0.043)S(0.953)FSSSR ;; 224.64 7.33E-28 746050000 699070 740650 576230 240657 699770 695310 801140 981870 625720 681840 TRUE FALSE FALSE 650068.803 681958.1966 799361.688 560261.6581 611998.3215 609529.7216 600686.2984 758319.6351 679957.9134 511102.826 1.271894362 1.334287666 1.563993872 1.096181883 1.19740743 1.192577483 1.175274853 1.483692902 1.330374005 1 18.96325404 -5.272352774 24.99732914 1.228144938 1.384481547 0.248306815 0.140586271 1166.269896 2671360.594 0.041012566 0.061467138 5.34E-06 5.272352774 0.156336609 QSSGASSSSFS(ph)SSR ddPTM_HeLa_A485_30min_R1 1 QSSGASSSSFSSSR 14 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 QSSGASSSSFS(0.917)S(0.065)S(0.017)R 193.3 5.70E-18 131290000 91155 104630 92479 86641 133270 94378 124980 137110 80205 97766 TRUE FALSE FALSE 111432.1153 116865.5683 126690.8305 91373.97844 120001.1709 99319.48614 98277.00201 103483.5575 96301.40782 73394.73545 1.518257605 1.592288161 1.72615692 1.244966385 1.635010606 1.353223573 1.339019773 1.40995886 1.31210239 1 16.16338896 -11.67389026 0.099845651 1.23E-11 1.867628723 0.635501307 0.12204149 61.83542503 0.720500384 16.00002136 2.421155536 2.12E-12 11.67389026 1.867628723 QSSGPSSS(ph)PAAAAAPEKPGPK ddPTM_HeLa_A485_30min_R1 1 QSSGPSSSPAAAAAPEKPGPK 21 1 Q9UDT6;Q9UDT6-2 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 QSSGPS(0.001)S(0.105)S(0.895)PAAAAAPEKPGPK 229.7 2.36E-36 380300000 238510 198360 113070 308220 282030 240050 336440 395350 192590 430650 TRUE FALSE FALSE 291565.7267 221556.4765 154899.2982 325057.2781 253950.1029 252618.6468 264556.8455 298389.7926 231241.0465 323296.8805 0.901851345 0.685303478 0.479124011 1.005445143 0.785501247 0.781382878 0.818309305 0.922959084 0.715259133 1 18.30250006 -14 0.113516025 1.696134632 0.670558218 0.176706563 0.137901574 275.2858615 2.05639931 44.18262566 1.592079504 1.00E-14 14 -1.025576414 QSSGPSSS(ph)PAAAAAPEKPGPK ddPTM_HeLa_A486_30min_R1 1 QSSGPSSSPAAAAAPEKPGPK 21 1 Q9UDT6;Q9UDT6-2 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 QSSGPS(0.048)S(0.348)S(0.604)PAAAAAPEKPGPK 200.13 3.67E-27 0 243490 226250 99013 102110 207540 239950 318480 300510 186770 353330 TRUE FALSE FALSE 226422.6084 208321.126 137353.4853 237717.2404 181508.398 210347.4086 238792.9355 232090.4331 202959.374 264853.8682 0.854896362 0.786551193 0.518601016 0.897541131 0.685315262 0.794201761 0.901602597 0.87629618 0.766307003 1 18.01483705 -6.585531684 4.712867872 0.874708159 0.745438834 0.256737617 0.109628682 0.312193311 13.90513375 0.042140439 0.03251062 2.60E-07 6.585531684 -0.129269325 QSSIFGGADVGFSGGIPS(ph)PDKGHR ddPTM_HeLa_A485_30min_R1 1 QSSIFGGADVGFSGGIPSPDKGHR 24 1 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 QSSIFGGADVGFS(0.001)GGIPS(0.999)PDKGHR 101.37 0.00053443 329780000 107770 104400 87357 148640 154890 105920 147370 148560 97062 210910 TRUE FALSE FALSE 131743.0647 116608.6718 119673.9895 156759.8268 139468.6077 111465.8074 115883.1956 112125.4271 116541.4531 158334.0185 0.832057861 0.736472635 0.755832453 0.99005778 0.880850553 0.703991527 0.7318907 0.708157527 0.736048098 1 17.27261173 -6.258333973 24.92500084 0.755019487 0.837120927 0.066767723 0.103815075 590.5019438 4739575.775 0.03533324 0.033878171 5.52E-07 6.258333973 0.08210144 QSSLAEPVS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 QSSLAEPVSPSK 12 0 O43572;E7EMD6 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 QSSLAEPVS(0.993)PS(0.007)K;QSSLAEPVS(0.96)PS(0.04)K;QSSLAEPVS(0.89)PS(0.11)K;QSSLAEPVS(0.999)PS(0.001)K ;;; 137.91 9.42E-06 1479120000 1810370 1508940 1170520 2534140 1830670 1670580 2646090 2151450 1361520 3299160 TRUE FALSE FALSE 2213080.561 1685397.407 1603544.057 2672573.651 1648402.067 1758048.986 2080731.255 1623803.514 1634764.575 2476740.129 0.893545728 0.680490209 0.647441384 1.079069064 0.665553099 0.709823758 0.840108831 0.655621272 0.660046872 1 21.24001107 QSSLAEPVS(ph)PSK ddPTM_HeLa_A486_30min_R1 4 QSSLAEPVSPSK 12 0 O43572;E7EMD6 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 QSSLAEPVS(0.755)PS(0.245)K;QSSLAEPVS(0.961)PS(0.039)K;QSSLAEPVS(0.999)PS(0.001)K;QSSLAEPVS(0.993)PS(0.007)K ;;; 198.89 5.39E-17 1436420000 2924870 2705670 1312500 1314230 2229770 2830630 3583730 3224140 2118680 4345600 TRUE FALSE FALSE 2719851.717 2491262.855 1820735.15 3059593.858 1950091.455 2481415.65 2687042.849 2490073.704 2302328.888 3257433.475 0.834967694 0.764793164 0.558947762 0.939265186 0.598658874 0.76177017 0.824895695 0.764428107 0.706792297 1 21.63530428 -10.43714332 2.930548309 1.005615061 0.749303405 0.336384803 0.105118216 36154932.51 41994454.13 1676625.386 0.024661539 3.65E-11 10.43714332 -0.256311657 QSSLAEPVS(ph)PSKK ddPTM_HeLa_A485_30min_R1 1 QSSLAEPVSPSKK 13 1 O43572;E7EMD6 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 QSSLAEPVS(0.986)PS(0.013)KK 51.193 0.030242 153030000 87160 61980 33683 158720 81527 78020 119270 104000 65183 202160 TRUE FALSE FALSE 106548.4413 69228.02185 46143.74337 167390.4717 73409.88562 82105.00656 93786.99015 78493.83693 78264.63021 151765.2325 0.702060937 0.45615205 0.304046866 1.102956645 0.48370687 0.541000104 0.617974147 0.517205658 0.515695386 1 17.2114818 -9.99342836 4.537601415 1.000010911 0.580748186 0.281781469 0.20003962 44186400 19462862.85 4728.562456 0.047700147 1.02E-10 9.99342836 -0.419262725 QSSLAEPVS(ph)PSKK ddPTM_HeLa_A486_30min_R1 2 QSSLAEPVSPSKK 13 1 O43572;E7EMD6 O43572 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 QSSLAEPVS(0.981)PS(0.019)KK;QSSLAEPVS(0.978)PS(0.022)KK ; 102.03 0.00037776 127670000 396350 344320 124224 214460 279000 458610 540750 483250 269210 746830 TRUE FALSE FALSE 368567.9118 317034.8292 172326.8596 499273.7182 244005.2184 402031.361 405448.6305 373224.5243 292545.3396 559818.907 0.658369889 0.566316759 0.30782608 0.891848617 0.435864554 0.718145379 0.72424962 0.666687959 0.522571381 1 19.09460069 -14 0.227139158 3.030738603 0.567030626 0.356429764 0.155902377 173.7582595 1.739996597 162.1956963 0.270778451 1.00E-14 14 -2.463707977 QSSSEQCS(ph)DGEGR ddPTM_HeLa_A485_30min_R1 4 QSSSEQCSDGEGR 13 0 O60343-2;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 QSSS(0.003)EQCS(0.997)DGEGR;QSSSEQCS(1)DGEGR;QSSSEQCS(1)DGEGR;QSSSEQCS(1)DGEGR ;;; 233.12 1.46E-28 667930000 696725 924392 786157 829983 830042 780124 940009 1020438 763607 1067337 TRUE FALSE FALSE 851709.0726 1032491.603 1076989.189 875322.8697 747400.104 820970.0863 739168.398 770173.9805 916855.9207 801269.5288 1.062949534 1.288569659 1.344103514 1.092420014 0.932769907 1.02458668 0.922496578 0.961192149 1.144254072 1 19.61192809 -5.493746797 5.54484672 0.994172699 1.23640213 0.584569165 0.088333494 0.125026905 11.25754476 0.025540044 0.036686314 3.21E-06 5.493746797 0.242229431 QSSSEQCS(ph)DGEGR ddPTM_HeLa_A486_30min_R1 3 QSSSEQCSDGEGR 13 0 O60343-2;A0A3B3IRT3;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 QSSSEQCS(1)DGEGR;QSS(0.002)S(0.011)EQCS(0.987)DGEGR;QSSSEQCS(1)DGEGR ;; 229.69 7.52E-28 302362000 520171 410033 500549 187418 473000 602016 505090 465998 561613 549325 TRUE FALSE FALSE 483709.6991 377540.4918 694374.978 436318.5756 413671.9295 527745.3868 378711.1397 359900.4281 610294.067 411770.4445 1.174707183 0.916871273 1.686315731 1.059616059 1.004617828 1.281649506 0.919714236 0.874031716 1.482122078 1 18.65148076 QSSSS(ph)RDDNMFQIGK ddPTM_HeLa_A486_30min_R1 1 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 QS(0.054)S(0.212)S(0.212)S(0.522)RDDNMFQIGK 136.04 4.43E-06 369610000 303980 464030 486880 77211 593930 305390 286580 367570 354410 196340 TRUE FALSE FALSE 282672.5718 427258.5728 675412.9751 179751.11 519433.7612 267714.0868 214874.6529 283882.335 385130.5442 147175.186 1.920653742 2.903061204 4.589176975 1.221341144 3.529356919 1.819016466 1.459992398 1.928873628 2.616817104 1 17.16717493 -6.295189914 20.9739093 1.803933045 2.844685593 0.25178139 0.919006901 137.797736 85631.37608 0.318264831 0.280735676 5.07E-07 6.295189914 1.040752548 QSSSSAGDS(ph)DGEREDSAAER ddPTM_HeLa_A485_30min_R1 2 QSSSSAGDSDGEREDSAAER 20 1 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 1 0 QSSSSAGDS(1)DGEREDSAAER;QSSSS(0.001)AGDS(0.999)DGEREDSAAER ; 183.58 2.76E-19 281410000 162818 205470 212470 227890 315530 194980 253610 285900 233790 311190 TRUE FALSE FALSE 199036.3024 229497.9291 291071.4946 240339.0537 284114.7253 205188.8513 199424.1517 215782.5767 280709.5086 233616.06 0.851980392 0.982372227 1.245939575 1.02877796 1.216160932 0.878316548 0.853640592 0.923663282 1.201584808 1 17.83377993 -6.286122179 24.98820204 0.959307484 1.068487986 0.100701546 0.137300566 1751.619577 1773286.418 0.050041869 0.044154131 5.17E-07 6.286122179 0.109180502 QSSSSAGDS(ph)DGEREDSAAER ddPTM_HeLa_A486_30min_R1 2 QSSSSAGDSDGEREDSAAER 20 1 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 1 0 QSSSSAGDS(1)DGEREDSAAER;QSSSSAGDS(1)DGEREDSAAER ; 178.2 1.90E-15 659290000 264320 384060 320540 140186 411060 370970 422700 408920 317600 367050 TRUE FALSE FALSE 245792.5329 353625.6869 444661.6724 326360.0926 359501.0218 325203.4931 316935.9891 315817.8427 345129.8237 275138.2909 0.893341789 1.28526526 1.616138818 1.186167478 1.306619375 1.181963776 1.151915235 1.147851292 1.25438674 1 18.06979741 -6.404425763 4.115594697 1.152350928 1.274808118 0.088205419 0.174588636 0.624961579 17.94160729 0.065963733 0.057100515 3.94E-07 6.404425763 0.122457191 QSSTPGSLFLS(ph)PPAPAPK ddPTM_HeLa_A485_30min_R1 1 QSSTPGSLFLSPPAPAPK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 QSSTPGS(0.001)LFLS(0.999)PPAPAPK 115.98 4.66E-06 0 52128 55261 34928 63224 62610 53993 68140 78409 48223 70322 TRUE FALSE FALSE 63723.69376 61723.29324 47849.32068 66677.76703 56376.32856 56819.98999 53581.33235 59179.06981 57900.91377 52792.01958 1.207070581 1.169178481 0.906374127 1.263027396 1.067894902 1.076298851 1.014951365 1.120985147 1.096773987 1 15.68803224 -5.928906021 25 1.067048267 1.127714045 0.127174163 0.092954709 120.6787985 42433.72555 0.028681954 0.032522274 1.18E-06 5.928906021 0.060665778 QSSTPGSLFLS(ph)PPAPAPK ddPTM_HeLa_A486_30min_R1 2 QSSTPGSLFLSPPAPAPK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 QSSTPGS(0.004)LFLS(0.996)PPAPAPK;QSSTPGSLFLS(1)PPAPAPK ; 126.4 1.15E-05 193925000 240160 232740 150579 101494 243480 249890 267560 290090 214872 296180 TRUE FALSE FALSE 223326.0242 214296.8348 208887.2214 236283.1612 212940.468 219061.1125 200613.658 224042.8396 233497.278 222014.6002 1.005906927 0.965237577 0.940871552 1.064268571 0.959128219 0.986696876 0.903605699 1.009135613 1.051720372 1 17.76029503 -7.512031492 24.8186772 1.027382805 0.975217513 0.208039602 0.041245852 712.3133636 1629804.758 0.024469309 0.010578254 3.08E-08 7.512031492 -0.052165291 QSTLYSFFPKS(ph)PALSDANK ddPTM_HeLa_A485_30min_R1 1 QSTLYSFFPKSPALSDANK 19 1 A0A087WWJ1;P52701-2;P52701;P52701-3;F8WAX8;F8W7G9 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 QSTLYSFFPKS(1)PALSDANK 126.97 2.43E-06 667380000 317020 376360 188410 435170 590410 495100 884470 1117000 321540 652820 TRUE FALSE FALSE 387540.0053 420372.0281 258110.6994 458942.2352 531626.7073 521022.6704 695495.759 843053.9986 386070.1287 490083.9883 0.79076243 0.857755075 0.526666256 0.936456294 1.08476653 1.063129347 1.419135854 1.72022351 0.787763196 1 18.90266949 -5.879553846 1.528148917 1.2661558 0.738620735 0.388615697 0.25206457 0.365058263 1.765125438 0.096999273 0.119478471 1.32E-06 5.879553846 -0.527535065 QSTLYSFFPKS(ph)PALSDANK ddPTM_HeLa_A486_30min_R1 2 QSTLYSFFPKSPALSDANK 19 1 A0A087WWJ1;P52701-2;P52701;P52701-3;F8WAX8;F8W7G9 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 QSTLYSFFPKS(1)PALSDANK;QSTLYSFFPKS(1)PALSDANK ; 179.5 2.55E-18 1426060000 938980 769680 448450 607900 1155620 1149730 1723570 1680780 630180 1418860 TRUE FALSE FALSE 873162.3509 708687.7537 622101.8499 1415221.922 1010671.364 1007888.002 1292314.556 1298103.085 684804.5098 1063568.221 0.820974465 0.666330321 0.584919555 1.330635773 0.950264726 0.947647723 1.215074436 1.220516992 0.64387455 1 20.02048114 -5.243247648 24.98566854 1.052397782 0.688300314 0.426322957 0.187605281 762.3827069 1047103.037 0.050042624 0.086455359 5.71E-06 5.243247648 -0.364097468 QSVDKVT(ph)SPTKV ddPTM_HeLa_A486_30min_R1 1 QSVDKVTSPTKV 12 2 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 QSVDKVT(0.446)S(0.446)PT(0.107)KV 119.88 8.55E-05 1173200000 2170100 1556600 803550 1424400 1824600 2189000 3411400 3134800 1193500 3536100 TRUE FALSE FALSE 2017987.196 1433249.347 1114706.08 3316075.185 1595741.654 1918943.436 2557831.638 2421074.472 1296953.541 2650637.544 0.761321442 0.540718723 0.420542628 1.251048146 0.602021826 0.723955427 0.964987327 0.913393262 0.489298714 1 21.33790797 QSVDKVTS(ph)PTKV ddPTM_HeLa_A485_30min_R1 7 QSVDKVTSPTKV 12 2 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 QSVDKVT(0.037)S(0.962)PT(0.001)KV;QSVDKVT(0.282)S(0.714)PT(0.004)KV;QSVDKVT(0.036)S(0.952)PT(0.012)KV;QSVDKVT(0.23)S(0.768)PT(0.002)KV;QSVDKVT(0.019)S(0.979)PT(0.002)KV;QSVDKVT(0.249)S(0.743)PT(0.008)KV;QSVDKVT(0.039)S(0.961)PT(0.001)KV ;;;;;; 192.39 5.55E-13 31888370000 8637190 7286650 3881290 12043460 11086860 9647800 18626080 19945980 6899120 16741170 TRUE FALSE FALSE 10558503.12 8138760.332 5317140.685 12701363.72 9983013.29 10152943.89 14646465.85 15054197.13 8283710.102 12567904.42 0.84011644 0.647582927 0.423072973 1.010619058 0.794326004 0.807847001 1.165386477 1.197828741 0.659116256 1 23.58324078 -5.808815502 1.164878326 0.996244672 0.659644574 0.286553316 0.195039393 0.584402718 1.681274432 0.084882427 0.118882035 1.55E-06 5.808815502 -0.336600098 QSVDKVTS(ph)PTKV ddPTM_HeLa_A486_30min_R1 3 QSVDKVTSPTKV 12 2 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 QSVDKVT(0.079)S(0.92)PT(0.001)KV;QSVDKVT(0.033)S(0.967)PTKV;QSVDKVT(0.03)S(0.813)PT(0.156)KV ;; 144.97 1.40E-07 24823960000 3897910 2958910 1423050 2634130 3077460 3635250 6263380 5685050 2176340 6131630 TRUE FALSE FALSE 3624686.638 2724435.195 1974093.071 6132387.762 2691456.271 3186769.816 4696216.077 4390688.219 2364986.904 4596229.938 0.788621694 0.59275433 0.429502679 1.334221274 0.585579117 0.693344297 1.021753946 0.955280366 0.514549301 1 22.13201954 QSVENDIHGLR ddPTM_HeLa_A485_30min_R1 3 QSVENDIHGLR 11 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ;; ;; 158.4 5.40E-06 28384000 164269 172483 224645 176282 262448 190870 253880 241344 186060 266887 FALSE FALSE TRUE 200810.0723 192653.3864 307750.5338 185911.8393 236317.7556 200863.6581 199636.464 182154.0056 223400.5354 200356.9826 1.002261412 0.961550648 1.536011023 0.92790297 1.179483503 1.002528864 0.996403826 0.909147279 1.115012477 1 17.61221326 -6.282314005 20.93013813 0.998426621 1.124838469 0.109975418 0.165561787 230.6102058 231220.0977 0.057850738 0.051132824 5.22E-07 6.282314005 0.126411848 QSVENDIHGLRK ddPTM_HeLa_A485_30min_R1 4 QSVENDIHGLRK 12 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ;;; ;;; 81.494 0.0072027 245736000 353437.9 209732.7 187444.8 259152.6 306302 311958.3 406184 422942 241921.7 375063 FALSE FALSE TRUE 432058.9415 234259.1148 256788.4317 273309.4503 275805.4974 328291.9542 319399.4702 319214.8114 290473.1662 281566.6966 1.534481694 0.831984456 0.911998595 0.970673924 0.979538776 1.165947387 1.134365229 1.133709402 1.031631829 1 18.10311718 -6.252964961 24.4394729 1.104064761 1.022260523 0.006670832 0.18355433 1800.958228 5193803.564 0.060128307 0.059162463 5.59E-07 6.252964961 -0.081804238 QSVTSFPDADAFHHQVHDDDLLS(ph)S(ph)SEEECKDR ddPTM_HeLa_A486_30min_R1 3 QSVTSFPDADAFHHQVHDDDLLSSSEEECKDR 32 1 P50402;Q5HY57 P50402 EMD Emerin 2 0 QSVTSFPDADAFHHQVHDDDLLS(0.995)S(0.895)S(0.11)EEECKDR;QSVTSFPDADAFHHQVHDDDLLS(0.974)S(0.889)S(0.136)EEECKDR;QSVTSFPDADAFHHQVHDDDLLS(0.887)S(0.903)S(0.21)EEECKDR ;; 186.71 2.32E-21 821000000 202052 167765 128137 62994 167250 195973 260989 197985 171923 256376 TRUE FALSE FALSE 187889.1982 154470.6904 177755.078 146653.2155 146271.9455 171795.8438 195686.7917 152908.1375 186825.4241 192177.7809 0.977684295 0.803790582 0.924951247 0.763112233 0.761128289 0.893942281 1.018259191 0.795659815 0.97214893 1 17.55208202 -6.518035862 24.99499011 0.933290367 0.841946225 0.231785045 0.084639755 347.4978775 1793516.812 0.031271163 0.024899001 3.03E-07 6.518035862 -0.091344142 QSVTSFPDADAFHHQVHDDDLLS(ph)SSEEECKDR ddPTM_HeLa_A485_30min_R1 3 QSVTSFPDADAFHHQVHDDDLLSSSEEECKDR 32 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 QSVTSFPDADAFHHQVHDDDLLS(0.955)S(0.023)S(0.023)EEECKDR;QSVTSFPDADAFHHQVHDDDLLS(0.976)S(0.02)S(0.004)EEECKDR;QSVTSFPDADAFHHQVHDDDLLS(0.761)S(0.098)S(0.141)EEECKDR ;; 319.49 9.48E-110 1729110000 546915 355729 214054 528038 368530 337910 522922 602426 311337 1178130 TRUE FALSE FALSE 668574.3549 397328.4121 293241.4821 556883.3789 331837.8592 355602.4451 411195.4428 454680.0789 373819.4801 884443.8729 0.755926267 0.449240957 0.331554654 0.629642418 0.375193802 0.402063326 0.464919771 0.514085849 0.422660489 1 19.75441107 -10.15979832 4.680821527 1.000060293 0.476545982 0.626143745 0.11980313 316393057.6 24.58144731 208357.0563 0.028136983 6.92E-11 10.15979832 -0.523514312 QSVTSFPDADAFHHQVHDDDLLS(ph)SSEEECKDR ddPTM_HeLa_A486_30min_R1 1 QSVTSFPDADAFHHQVHDDDLLSSSEEECKDR 32 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 QSVTSFPDADAFHHQVHDDDLLS(0.472)S(0.309)S(0.219)EEECKDR 64.645 0.0036955 344910000 110050 106710 75711 37345 99753 99375 138400 123090 96121 124820 TRUE FALSE FALSE 102336.0633 98253.91097 105028.3268 86941.04731 87241.04858 87115.12287 103770.8562 95065.09404 104452.8457 93564.25956 1.09375165 1.050122252 1.122526137 0.929212156 0.932418522 0.931072648 1.109086489 1.016040681 1.116375485 1 16.51366992 -5.244323312 24.97989244 1.003801508 1.084932236 0.257103641 0.065248364 1283.027021 1872498.427 0.019055802 0.032893866 5.70E-06 5.244323312 0.081130729 QSVTSFPDADAFHHQVHDDDLLSS(ph)SEEECKDR ddPTM_HeLa_A485_30min_R1 1 QSVTSFPDADAFHHQVHDDDLLSSSEEECKDR 32 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 QSVTSFPDADAFHHQVHDDDLLS(0.002)S(0.59)S(0.408)EEECKDR 220.67 3.80E-39 610420000 80465 65650 40534 83650 52013 65674 84764 116590 48802 259100 TRUE FALSE FALSE 98364.16165 73327.19642 55529.21336 88219.58769 46834.40309 69112.58909 66653.47894 87996.11969 58596.11376 194511.1384 0.505699378 0.376981992 0.285480892 0.453545172 0.240780058 0.355314301 0.342671785 0.452396302 0.301248115 1 17.56949325 -10.63190024 2.784044022 1.059841957 0.366162483 0.853252222 0.078595967 16080775.34 15373213.17 6950827.066 0.019970972 2.33E-11 10.63190024 -0.693679474 QSVTSFPDADAFHHQVHDDDLLSS(ph)SEEECKDR ddPTM_HeLa_A486_30min_R1 1 QSVTSFPDADAFHHQVHDDDLLSSSEEECKDR 32 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 QSVTSFPDADAFHHQVHDDDLLS(0.003)S(0.499)S(0.499)EEECKDR 174.66 4.34E-15 630600000 57597 52828 35944 12345 54407 52478 65967 56605 57969 70392 TRUE FALSE FALSE 53559.74773 48641.71688 49862.47941 28739.78388 47582.76673 46003.79792 49461.35887 43717.27718 62993.79959 52765.38502 1.015054618 0.92184899 0.94498466 0.544671168 0.901779959 0.871855628 0.937382696 0.828521902 1.193847056 1 15.68730419 -7.752453256 24.99985473 1.096923546 0.867360714 0.336281097 0.127020197 193.5318437 538426.1394 0.090123309 0.032950955 1.77E-08 7.752453256 -0.229562832 QSVTSFPDADAFHHQVHDDDLLSSS(ph)EEECKDR ddPTM_HeLa_A486_30min_R1 1 QSVTSFPDADAFHHQVHDDDLLSSSEEECKDR 32 1 P50402;Q5HY57 P50402 EMD Emerin 1 0 QSVTSFPDADAFHHQVHDDDLLS(0.001)S(0.153)S(0.846)EEECKDR 225.58 2.40E-39 647930000 86849 68704 55765 19784 73979 82497 103800 79264 82660 98252 TRUE FALSE FALSE 80761.33359 63259.64482 77358.70144 46058.15183 64699.86399 72319.35891 77828.14212 61217.31752 89825.03535 73649.05969 1.096569786 0.858933503 1.050369167 0.62537325 0.878488663 0.981945448 1.056743188 0.831202975 1.219635875 1 16.16837949 -6.379577806 4.482134895 1.013275099 0.892904399 0.13501514 0.147373863 0.504291299 16.28675473 0.05281869 0.046126494 4.17E-07 6.379577806 -0.1203707 QT(ph)PSRQPPLPHR ddPTM_HeLa_A485_30min_R1 4 QTPSRQPPLPHR 12 1 Q07666;Q07666-3 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 QT(0.991)PS(0.009)RQPPLPHR;QT(0.98)PS(0.02)RQPPLPHR;QT(0.937)PS(0.063)RQPPLPHR;QT(0.926)PS(0.074)RQPPLPHR ;;; 95.57 0.0018587 1219920000 790340 1037920 839060 622369 1343480 970780 1232870 1296680 756640 882830 TRUE FALSE FALSE 966148.4064 1159295.715 1149463.21 656367.4425 1209718.414 1021608.54 969457.2529 978667.1969 908490.7077 662756.7283 1.457772309 1.749202484 1.734366716 0.990359531 1.825282735 1.541453291 1.46276486 1.476661277 1.370775533 1 19.33811989 -9.901548694 0.299104105 0.721432944 1.590187231 0.355416756 0.218310926 14.85706339 1.180346542 3.798599386 0.249480693 1.25E-10 9.901548694 0.868754287 QT(ph)PSRQPPLPHR ddPTM_HeLa_A486_30min_R1 3 QTPSRQPPLPHR 12 1 Q07666;Q07666-3 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 QT(0.997)PS(0.003)RQPPLPHR;QT(0.932)PS(0.068)RQPPLPHR;QT(0.653)PS(0.347)RQPPLPHR ;; 109.83 0.00048789 1096980000 467250 531130 498840 180769 721160 458290 626790 623290 419621 510390 TRUE FALSE FALSE 434498.1879 489041.3245 692004.2074 420839.3676 630705.3883 401750.8394 469960.5125 481380.4733 455994.0861 382585.0219 1.135690534 1.27825528 1.808759276 1.099989136 1.64853654 1.050095577 1.22838189 1.258231362 1.191876472 1 18.54542087 -6.285689111 24.98729258 1.167023078 1.394483164 0.249505002 0.213926964 1240.00878 1277719.517 0.07345176 0.064808315 5.18E-07 6.285689111 0.227460085 QT(ph)SPDPCPQLPLVPR ddPTM_HeLa_A486_30min_R1 1 QTSPDPCPQLPLVPR 15 0 Q5D1E8;A0A1W2PQC8 Q5D1E8 ZC3H12A Ribonuclease ZC3H12A 1 0 QT(0.5)S(0.5)PDPCPQLPLVPR 83.499 0.013242 65188000 56109 59207 53971 22199 75797 55071 62223 73827 52469 66179 TRUE FALSE FALSE 52176.04885 54515.22169 74870.01659 51680.39388 66289.83348 48276.89994 46654.14727 57018.20373 57017.05517 49607.34765 1.05178066 1.098934418 1.509252563 1.041789096 1.336290623 0.973180431 0.940468489 1.149390291 1.149367138 1 15.5982662 -6.27356995 24.98935538 1.045442364 1.209117679 0.243981611 0.145279011 1195.590878 2462948.037 0.051461004 0.045717779 5.33E-07 6.27356995 0.163675315 QTAEESGITNSASSTLLSEYNVT(ph)NNSVALRTPR ddPTM_HeLa_A485_30min_R1 1 QTAEESGITNSASSTLLSEYNVTNNSVALRTPR 33 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 QTAEESGIT(0.002)NS(0.007)AS(0.006)S(0.006)T(0.006)LLS(0.018)EYNVT(0.387)NNS(0.33)VALRT(0.241)PR 71.528 0.0014458 322460000 9043.1 9345.7 7527.1 13669 12570 15772 17833 15055 5799.2 26298 TRUE FALSE FALSE 11054.7064 10438.59832 10311.68752 14415.70286 11318.48666 16597.79753 14022.83387 11362.73764 6963.046247 19742.39258 0.559947653 0.528740287 0.522311948 0.730190264 0.573308763 0.840718645 0.710290499 0.575550182 0.352695157 1 14.26900922 -5.247689031 23.78133359 0.668672025 0.53617397 0.141576781 0.162269739 926.5854614 1602529.563 0.043691298 0.075094894 5.65E-06 5.247689031 -0.132498056 QTAEESGITNSASSTLLSEYNVTNNSVALRT(ph)PR ddPTM_HeLa_A485_30min_R1 1 QTAEESGITNSASSTLLSEYNVTNNSVALRTPR 33 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 QTAEESGITNSASSTLLSEYNVT(0.001)NNS(0.003)VALRT(0.996)PR 203.44 4.17E-29 355130000 48558 62818 45525 46039 61551 44527 63322 61051 54815 63711 TRUE FALSE FALSE 59359.55958 70164.01866 62366.59195 48553.99399 55422.76632 46858.36487 49792.73741 46078.14653 65815.86771 47829.02021 1.24107831 1.466975872 1.303948767 1.015157613 1.15876859 0.979705724 1.041057023 0.963393068 1.376065565 1 15.54559862 -5.164300031 4.830324521 1.073057758 1.359774873 0.479237593 0.12495233 0.177005943 6.714252709 0.032810452 0.058445157 6.85E-06 5.164300031 0.286717115 QTAEESGITNSASSTLLSEYNVTNNSVALRT(ph)PR ddPTM_HeLa_A486_30min_R1 1 QTAEESGITNSASSTLLSEYNVTNNSVALRTPR 33 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 QTAEESGITNSASSTLLSEYNVT(0.003)NNS(0.007)VALRT(0.99)PR 135.67 1.54E-06 414660000 131370 114670 75547 61377 108130 118040 163980 166400 90697 206290 TRUE FALSE FALSE 122161.6414 105583.1316 104800.8216 142888.7578 94567.32713 103477.4249 122950.4696 128514.3525 98558.68899 154633.6413 0.790006886 0.682795352 0.677736234 0.924047036 0.611557268 0.669177962 0.795108157 0.831089221 0.637368998 1 17.23849469 -10.88754041 2.565857654 1.135462735 0.736710957 0.420685622 0.093129287 18774812.27 10898304.48 15408519.98 0.023031937 1.30E-11 10.88754041 -0.398751778 QTAEETGLT(ph)PLETSR ddPTM_HeLa_A485_30min_R1 2 QTAEETGLTPLETSR 15 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 QTAEETGLT(1)PLETSR;QTAEET(0.001)GLT(0.999)PLETSR ; 228.32 2.97E-33 163500000 212006 279650 261510 229404 338800 246297 298100 331050 232998 312470 TRUE FALSE FALSE 259166.0033 312352.6349 358253.4313 241935.7596 305067.8824 259192.7301 234408.4997 249859.4684 279758.5614 234576.9796 1.104822834 1.331557067 1.527231837 1.031370427 1.300502219 1.10493677 0.999281772 1.065149142 1.192608763 1 17.83970191 -6.041033025 1.266264334 1.067426615 1.293973614 0.308701084 0.136066027 0.543427557 1.807734817 0.06121635 0.067050345 9.10E-07 6.041033025 0.226546999 QTAEETGLT(ph)PLETSR ddPTM_HeLa_A486_30min_R1 2 QTAEETGLTPLETSR 15 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 QTAEET(0.061)GLT(0.939)PLETSR;QTAEET(0.001)GLT(0.999)PLETSR ; 144.17 4.24E-07 195955000 355840 413130 321170 133983 441200 379250 395970 417080 348010 402240 TRUE FALSE FALSE 330897.4536 380392.0742 445535.6252 311919.1951 385860.582 332461.9909 296894.1179 322119.9888 378175.787 301516.4859 1.097443984 1.261596271 1.477649303 1.034501295 1.27973295 1.102632879 0.984669601 1.068332923 1.254245803 1 18.20187736 -6.351514009 5.581705627 1.077904529 1.234532037 0.248231557 0.129182633 0.339556859 16.57238402 0.046458258 0.040858123 4.45E-07 6.351514009 0.156627509 QTATILS(ph)MDKDCLRTGDK ddPTM_HeLa_A486_30min_R1 1 QTATILSMDKDCLRTGDK 18 2 O00178;B0QY59 O00178 GTPBP1 GTP-binding protein 1 1 0 QT(0.002)AT(0.069)ILS(0.859)MDKDCLRT(0.069)GDK 52.72 0.03348 191110000 235740 221290 105720 111820 247150 300200 357770 328150 176510 386570 TRUE FALSE FALSE 219215.8434 203754.1745 146657.6153 260322.6111 216150.1424 263164.3762 268252.1619 253437.4085 191810.0289 289770.3559 0.756515768 0.703157415 0.506116697 0.898375578 0.745936008 0.908182535 0.925740527 0.874614685 0.661938066 1 18.14455049 -5.283847408 24.82273547 0.854118174 0.66005268 0.430622841 0.107335493 684.6985346 758480.6209 0.029965767 0.044484493 5.20E-06 5.283847408 -0.194065494 QTDKPSHCSQFVT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 QTDKPSHCSQFVTPPR 16 1 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 QTDKPSHCSQFVT(1)PPR;QTDKPS(0.002)HCS(0.023)QFVT(0.975)PPR ; 171.39 3.76E-12 531400000 245140 462870 439430 99724 587810 367780 388700 482170 393120 230978 TRUE FALSE FALSE 299670.5473 516998.6201 601993.4432 105171.6696 529285.5725 387036.3921 305651.0696 363917.0515 472015.5781 173399.4354 1.728209475 2.981547309 3.471715128 0.606528328 3.05240655 2.232051051 1.762699335 2.098721086 2.72212869 1 17.40373968 -10.95563862 2.560357162 1.28E-09 2.299226167 0.198095517 0.781682907 20276260.7 9712194.461 120529220.7 0.193814316 1.11E-11 10.95563862 2.299226166 QTDKPSHCSQFVT(ph)PPR ddPTM_HeLa_A486_30min_R1 1 QTDKPSHCSQFVTPPR 16 1 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 QTDKPSHCSQFVT(1)PPR 115.42 0.00015029 180540000 200580 246180 223660 29402 323870 154670 186260 186150 244150 84029 TRUE FALSE FALSE 186520.3778 226671.8002 310267.1418 68449.34189 283247.2046 135588.388 139655.7779 143767.7086 265313.1186 62987.59146 2.961224163 3.598673881 4.925845466 1.08671153 4.496873083 2.152620617 2.217195081 2.28247668 4.212148971 1 15.94278003 -5.67756411 0.970317411 2.51186979 3.633964319 0.114687938 1.232965549 1.35635166 2.707480598 0.549462067 0.958459665 2.10E-06 5.67756411 1.122094529 QTDLELS(ph)PLTK ddPTM_HeLa_A485_30min_R1 1 QTDLELSPLTK 11 0 J3KTC5;Q8WVK7 J3KTC5 SKA2 Spindle and kinetochore-associated protein 2 1 0 QTDLELS(1)PLTK 108.38 0.00051784 0 125280 118040 94109 135650 129580 120220 161600 185880 109720 215310 TRUE FALSE FALSE 153148.1038 131843.7512 128923.8353 143060.216 116678.5602 126514.5333 127072.8398 140292.6386 131739.7976 161637.1795 0.947480674 0.815677133 0.797612503 0.885069985 0.721854716 0.782706885 0.786160958 0.867947826 0.815034004 1 17.30239956 -9.035912482 1.09006802 1.001266913 0.819393952 0.436295126 0.059629691 10.70637933 10.20340065 0.111625197 0.017933653 9.21E-10 9.035912482 -0.181872961 QTDLELS(ph)PLTK ddPTM_HeLa_A486_30min_R1 1 QTDLELSPLTK 11 0 J3KTC5;Q8WVK7 J3KTC5 SKA2 Spindle and kinetochore-associated protein 2 1 0 QTDLELS(1)PLTK 133.16 3.23E-05 58809000 179940 193360 102420 79759 149210 205150 227190 214420 150020 295550 TRUE FALSE FALSE 167327.1352 178037.4494 142079.7669 185682.9828 130494.6905 179840.6788 170344.659 165601.2468 163023.8544 221542.3563 0.755282818 0.803627136 0.641321006 0.838137618 0.589028178 0.811766571 0.768903346 0.747492486 0.735858628 1 17.75722303 -13.99996799 0.473127854 7.804137122 0.740847605 0.530372806 0.072398171 1329.752349 7.035860042 9528.837851 0.034611325 1.00E-14 13.99996799 -7.063289517 QTDPST(ph)PQQESSKPLGGIQPSSQTIQPK ddPTM_HeLa_A486_30min_R1 2 QTDPSTPQQESSKPLGGIQPSSQTIQPK 28 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 QTDPS(0.065)T(0.922)PQQES(0.006)S(0.006)KPLGGIQPSSQTIQPK;QTDPS(0.023)T(0.977)PQQESSKPLGGIQPSSQTIQPK ; 258.38 5.11E-63 1577020000 665960 587770 310130 234190 621000 658370 807650 769200 534120 932670 TRUE FALSE FALSE 619279.643 541192.9646 430220.6416 545206.1553 543108.3894 577147.0032 605567.4275 594069.9515 580417.9517 699123.3613 0.885794521 0.774102246 0.615371572 0.779842565 0.776841999 0.825529563 0.866181079 0.849735518 0.830208206 1 19.41518752 -8.135186739 0.395637259 1.011774524 0.752312846 0.495880112 0.06635267 1.389374103 0.542113715 0.122705069 0.058411742 7.33E-09 8.135186739 -0.259461677 QTDVTGEEELT(ph)KGK ddPTM_HeLa_A485_30min_R1 1 QTDVTGEEELTKGK 14 1 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 QTDVTGEEELT(1)KGK 67.646 0.01319 1893100000 1432500 1616100 1268300 794120 2008800 2030100 2068400 2697000 1658900 1181200 TRUE FALSE FALSE 1751154.683 1805088.837 1737496.948 837500.7648 1808796.819 2136392.897 1626469.443 2035556.521 1991826.014 886748.5784 1.974804049 2.035626423 1.959402012 0.944462484 2.039807971 2.409243103 1.834194587 2.295528373 2.246212807 1 19.75816559 -5.944100338 24.99999936 2.051924246 1.732637068 0.04405749 0.469234222 215.0440921 96172.72642 0.142697225 0.161803422 1.14E-06 5.944100338 -0.319287178 QTDVTGEEELT(ph)KGK ddPTM_HeLa_A486_30min_R1 1 QTDVTGEEELTKGK 14 1 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 QTDVTGEEELT(1)KGK 79.022 0.0061538 417150000 942470 959530 598060 56735 1082000 897940 835620 938130 864750 375060 TRUE FALSE FALSE 876407.7199 883493.3483 829644.8486 132081.9472 946285.4708 787161.2924 626539.0377 724538.2782 939707.2263 281142.5348 3.117307456 3.142510432 2.950975914 0.469804213 3.365856652 2.799865531 2.228545881 2.577120815 3.342458398 1 18.10094221 -10.33895616 8.159156556 0.999993402 2.632882803 0.276534817 0.806827673 9.75E-05 7.90E-06 0.786799227 0.190826075 4.58E-11 10.33895616 1.632889401 QTELFAHFIQPAAQKT(ph)PT(ph)SPLK ddPTM_HeLa_A485_30min_R1 2 QTELFAHFIQPAAQKTPTSPLK 22 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 2 0 QTELFAHFIQPAAQKT(0.997)PT(0.63)S(0.373)PLK;QTELFAHFIQPAAQKT(0.997)PT(0.66)S(0.343)PLK ; 141.23 4.04E-08 1121220000 620810 443000 238336 1192740 720510 608800 1154850 1120700 412570 1650950 TRUE FALSE FALSE 758907.0427 494804.9964 326506.4044 1257896.366 648773.4945 640675.8266 908106.8632 845846.5678 495369.0147 1239398.548 0.612318809 0.399229931 0.263439395 1.014924834 0.52345833 0.516924784 0.732699634 0.682465353 0.399685005 1 20.24120875 -14 0.235944635 3.302605901 0.53269812 0.28042156 0.200934029 228.5665844 2.285348208 252.897113 0.335272649 1.00E-14 14 -2.769907782 QTELFAHFIQPS(ph)AQKS(ph)PTSPLNMK ddPTM_HeLa_A486_30min_R1 1 QTELFAHFIQPSAQKSPTSPLNMK 24 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 2 0 QTELFAHFIQPS(0.551)AQKS(0.646)PT(0.601)S(0.202)PLNMK 53.615 0.037129 88325000 74494 64944 27705 39778 61307 74810 106360 89364 50376 109560 TRUE FALSE FALSE 69272.35529 59797.60092 38433.11797 92605.19427 53617.30439 65580.70281 79747.60304 69017.768 54742.63224 82125.46288 0.843494245 0.728124979 0.467980534 1.12760636 0.652870651 0.79854287 0.97104601 0.840394265 0.666573196 1 16.32554198 -5.248459693 24.97161214 0.851414756 0.684692468 0.211912621 0.162247519 1342.730785 2583274.588 0.043198825 0.074219085 5.64E-06 5.248459693 -0.166722288 QTELFAHFIQPS(ph)AQKSPT(ph)SPLNMK ddPTM_HeLa_A485_30min_R1 1 QTELFAHFIQPSAQKSPTSPLNMK 24 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 2 0 QTELFAHFIQPS(0.916)AQKS(0.148)PT(0.497)S(0.439)PLNMK 103.82 0.012045 358770000 244090 192190 133930 347680 294460 288550 485120 492580 199670 510890 TRUE FALSE FALSE 298386.9784 214664.9487 183476.2803 366672.878 265142.5285 303658.0318 381470.1489 371773.9827 239741.9375 383534.5252 0.777992485 0.55970176 0.478382696 0.956036169 0.691313327 0.791735846 0.994617496 0.969336417 0.625085675 1 18.54899693 -5.264427744 24.99608813 0.855474079 0.600793257 0.412262638 0.139817233 259.1476771 2167638.449 0.039103238 0.060950146 5.44E-06 5.264427744 -0.254680822 QTELFAHFIQPSAQKS(ph)PT(ph)SPLNMK ddPTM_HeLa_A486_30min_R1 1 QTELFAHFIQPSAQKSPTSPLNMK 24 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 2 0 QTELFAHFIQPS(0.066)AQKS(0.927)PT(0.83)S(0.177)PLNMK 144.55 3.12E-09 75909000 155270 140930 70092 78432 143630 179760 252540 224380 122890 258230 TRUE FALSE FALSE 144386.3748 129762.1935 97233.49953 182593.6597 125614.5861 157583.0389 189351.8209 173293.5722 133542.2041 193567.5272 0.745922505 0.670371707 0.502323406 0.943307291 0.64894452 0.814098527 0.978221005 0.89526159 0.68989983 1 17.56247742 -5.959188807 0.987509447 0.881240232 0.663803913 0.30474781 0.130141233 0.691912574 1.459015172 0.065742144 0.081986456 1.10E-06 5.959188807 -0.217436319 QTELFAHFIQPSAQKS(ph)PTSPLNMK ddPTM_HeLa_A485_30min_R1 1 QTELFAHFIQPSAQKSPTSPLNMK 24 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 1 0 QTELFAHFIQPS(0.002)AQKS(0.996)PT(0.001)SPLNMK 155.8 5.76E-10 442960000 530750 424090 267360 653230 653300 653350 1014800 1138400 434910 922340 TRUE FALSE FALSE 648813.5064 473683.6364 366267.5898 688914.3008 588255.1581 687558.3957 797979.6898 859205.6151 522192.4478 692417.6124 0.93702629 0.68410108 0.528969199 0.994940464 0.849567006 0.992982246 1.152454351 1.240877759 0.75415824 1 19.4012829 -5.798678943 1.447898143 1.048184312 0.728903886 0.344684789 0.164955749 0.419761364 1.835000761 0.063724437 0.085175083 1.59E-06 5.798678943 -0.319280426 QTETEMLYGSAPRT(ph)PSK ddPTM_HeLa_A485_30min_R1 1 QTETEMLYGSAPRTPSK 17 1 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 QTETEMLYGSAPRT(1)PSK 140.59 1.26E-06 303040000 102540 201990 195550 95916 243640 269830 345440 494080 178810 165550 TRUE FALSE FALSE 125349.6692 225610.9734 267892.0825 101155.6482 219382.3461 283957.8816 271633.922 372906.1053 214695.5269 124281.4317 1.008595311 1.815323257 2.155527811 0.813924066 1.765206138 2.284797315 2.185635603 3.00049734 1.727494799 1 16.92325124 -6.048836695 5.954237571 2.162863455 1.497437723 0.164402306 0.591762147 0.326054582 27.85475427 0.190375706 0.194086296 8.94E-07 6.048836695 -0.665425732 QTETEMLYGSAPRT(ph)PSK ddPTM_HeLa_A486_30min_R1 1 QTETEMLYGSAPRTPSK 17 1 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 QTETEMLYGS(0.001)APRT(0.998)PS(0.002)K 128.38 1.54E-07 0 98039 96677 141640 69688 237470 127700 189830 208810 105910 161780 TRUE FALSE FALSE 91166.97237 89015.96243 196486.8013 162237.1858 207684.2983 111945.6724 142332.5262 161268.5213 115090.3641 121269.235 0.751773295 0.734035821 1.620252666 1.337826415 1.712588509 0.923116835 1.173690311 1.329838696 0.949048323 1 16.88785407 -4.734982243 24.97036766 1.272005199 0.742903693 0.398205405 0.251575321 212.156417 200230.9735 0.064291811 0.169990705 1.84E-05 4.734982243 -0.529101506 QTETEMLYGSAPRT(ph)PSKR ddPTM_HeLa_A485_30min_R1 1 QTETEMLYGSAPRTPSKR 18 2 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 QTETEMLYGSAPRT(0.991)PS(0.008)KR 101.5 0.00027038 196540000 66868 141320 96626 90737 242050 199830 301870 473780 121900 133080 TRUE FALSE FALSE 81742.55591 157846.1447 132371.9783 95693.73255 217950.6521 210292.7898 237373.0084 357584.7121 146364.2119 99905.60516 0.818197896 1.579952841 1.324970487 0.957841478 2.181565807 2.104914829 2.37597288 3.579225726 1.465025027 1 16.608278 -5.794355389 9.083858597 2.260683895 1.210791789 0.316652558 0.661210544 0.313475809 80.57454331 0.199478196 0.22836306 1.61E-06 5.794355389 -1.049892106 QTGIET(ph)PNKSGK ddPTM_HeLa_A485_30min_R1 4 QTGIETPNKSGK 12 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 QTGIET(1)PNKSGK;QTGIET(1)PNKSGK;QT(0.002)GIET(0.998)PNKSGK;QT(0.013)GIET(0.987)PNKSGK ;;; 128.59 4.00E-05 1623710000 2149310 2029340 1065610 2507960 2517350 2660480 3889760 4062160 1371030 2888700 TRUE FALSE FALSE 2627416.594 2266653.66 1459823.483 2644963.504 2266713.795 2799778.619 3058681 3065908.891 1646183.145 2168600.253 1.211572576 1.045215068 0.673163937 1.219663929 1.045242798 1.291053349 1.410440212 1.413773187 0.759099398 1 21.04833271 QTGIET(ph)PNKSGK ddPTM_HeLa_A486_30min_R1 3 QTGIETPNKSGK 12 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 QTGIET(1)PNKSGK;QT(0.002)GIET(0.997)PNKS(0.001)GK;QTGIET(1)PNKSGK ;; 110.12 0.00050639 941490000 2594570 1876240 846237 1251410 1943680 2213300 3160220 2987730 1370810 3453150 TRUE FALSE FALSE 2412704.041 1727559.909 1173922.629 2913345.723 1699885.53 1940245.549 2369499.531 2307489.101 1489632.915 2588458.764 0.932100629 0.667408704 0.453521859 1.12551367 0.656717254 0.749575607 0.915409418 0.891452911 0.575490302 1 21.3036619 -11.25272232 2.325577711 1.869787152 0.775328549 0.115887156 0.187133122 14289672.52 3284601.008 64945287.66 0.04663756 5.59E-12 11.25272232 -1.094458603 QTHTKHPT(ph)PER ddPTM_HeLa_A485_30min_R1 3 QTHTKHPTPER 11 1 Q8IYW5 Q8IYW5 RNF168 E3 ubiquitin-protein ligase RNF168 1 0 QTHTKHPT(1)PER;QTHTKHPT(0.999)PER;QTHTKHPT(0.999)PER ;; 111.43 0.00056888 174857000 123604 191485 112807 121355 158918 173410 231975 325248 137908 178077 TRUE FALSE FALSE 151099.2834 213877.5051 154539.0036 127984.3164 143095.5659 182489.4795 182411.6462 245480.418 165584.8706 133685.6812 1.130257796 1.599853501 1.155987704 0.957352465 1.070388127 1.365063766 1.364481556 1.836250643 1.238613359 1 17.02848542 -6.444980494 5.185010485 1.421996029 1.192225811 0.091299107 0.250650478 0.440569221 20.93905144 0.092357636 0.080026799 3.59E-07 6.444980494 -0.229770219 QTHTKHPT(ph)PER ddPTM_HeLa_A486_30min_R1 2 QTHTKHPTPER 11 1 Q8IYW5 Q8IYW5 RNF168 E3 ubiquitin-protein ligase RNF168 1 0 QTHT(0.002)KHPT(0.998)PER;QTHT(0.001)KHPT(0.999)PER ; 97.45 0.0019607 59739000 88721 71937 111951 28169 104641 83498 81808 76787 81903 82305 TRUE FALSE FALSE 82502.11606 66236.45013 155301.4254 65578.85558 91515.95004 73196.86571 61338.77312 59304.27635 89002.41799 61695.29228 1.337251401 1.07360623 2.517232995 1.062947482 1.483353861 1.186425463 0.994221291 0.961244759 1.442612794 1 15.91287279 -6.062446546 1.576789617 1.098425116 1.552851735 0.186828608 0.398742901 0.657351897 3.302852335 0.162268495 0.17170749 8.66E-07 6.062446546 0.454426619 QTLAAFVPLLLK ddPTM_HeLa_A485_30min_R1 1 QTLAAFVPLLLK 12 0 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 0 0 129.7 0.0017668 0 2186 3236.2 3449.6 4081.8 3960.7 2673.3 3714.6 3375.3 3139.5 5533.3 FALSE FALSE TRUE 2672.268158 3614.645439 4725.75059 4304.778398 3566.358801 2813.269854 2920.945365 2547.502383 3769.568853 4153.950143 0.643307711 0.870170636 1.137652217 1.036309597 0.858546366 0.677251714 0.703172947 0.613272258 0.90746608 1 12.02026819 -6.019067968 7.863660116 0.752789664 0.935443124 0.137163854 0.159168414 0.308664062 100.0210478 0.053152224 0.055476405 9.57E-07 6.019067968 0.18265346 QTLENER ddPTM_HeLa_A485_30min_R1 1 QTLENER 7 0 P35579 P35579 MYH9 Myosin-9 0 0 103.87 0.02704 10890000 8777.3 9144.6 11806 11393 14180 7932.6 11682 9418.2 9751.9 17455 FALSE FALSE TRUE 10729.7801 10213.98142 16173.53069 12015.37074 12768.18941 8347.93867 9186.045267 7108.371683 11709.01688 13103.78974 0.818830302 0.779467744 1.2342636 0.91693861 0.974389064 0.637062929 0.701022029 0.542466861 0.893559582 1 13.67769649 -6.251562076 24.42082163 0.722863943 0.950129898 0.235949202 0.16586461 636.4466013 1573562.438 0.054662134 0.053987626 5.60E-07 6.251562076 0.227265955 QTLLAVLQFLR ddPTM_HeLa_A485_30min_R1 1 QTLLAVLQFLR 11 0 Q15542-2;Q15542 Q15542-2 TAF5 Transcription initiation factor TFIID subunit 5 0 0 114.89 0.0053565 11962000 19938 20478 25752 19613 30073 19943 27017 21132 17708 29265 FALSE FALSE TRUE 24373.13931 22872.72397 35278.73643 20684.40853 27078.82653 20987.18464 21244.59724 15949.34387 21261.83317 21969.77408 1.109394171 1.041099644 1.605785125 0.941493911 1.232549157 0.955275396 0.966992067 0.725967586 0.967776596 1 14.42323241 -6.375980992 1.653862385 0.884704962 1.199050426 0.342555227 0.179027785 0.407167458 2.215872207 0.079455973 0.066350789 4.21E-07 6.375980992 0.314345463 QTLLAVLQFLR ddPTM_HeLa_A486_30min_R1 1 QTLLAVLQFLR 11 0 Q15542-2;Q15542 Q15542-2 TAF5 Transcription initiation factor TFIID subunit 5 0 0 109.42 0.0045373 0 4013.3 4114.9 4386.5 2355.5 4633.2 3916.7 4516.8 4847.4 3280.3 5290.7 FALSE FALSE TRUE 3731.988395 3788.820338 6085.070275 5483.72304 4052.060853 3433.497376 3386.648866 3743.752838 3564.639045 3965.874283 0.94102539 0.955355633 1.534357834 1.382727401 1.021732048 0.865760519 0.85394761 0.943991809 0.898828049 1 11.95342323 -5.970573088 7.188676772 0.909208601 1.209503094 0.396085226 0.169345664 0.205967259 36.65036147 0.058454526 0.065698869 1.07E-06 5.970573088 0.300294493 QTNGCLNGYT(ph)PSR ddPTM_HeLa_A485_30min_R1 1 QTNGCLNGYTPSR 13 0 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 0 QTNGCLNGYT(0.999)PS(0.001)R 328 4.23E-80 298540000 101670 161950 135730 109310 174610 137090 168080 175550 105710 143820 TRUE FALSE FALSE 124286.1407 180888.6437 185942.1752 115281.3285 157225.2153 144267.8204 132168.3349 132496.0872 126925.0274 107968.3208 1.151135257 1.675386283 1.722191971 1.067732902 1.456216176 1.336205095 1.224139951 1.227175585 1.175576562 1 16.72024855 -7.150104645 0.402250655 0.998662046 1.499965499 0.334742409 0.189078388 1.286535989 0.550716014 0.225442372 0.205903841 7.08E-08 7.150104645 0.501303453 QTNGCLNGYT(ph)PSR ddPTM_HeLa_A486_30min_R1 2 QTNGCLNGYTPSR 13 0 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 0 QTNGCLNGYT(0.998)PS(0.002)R;QTNGCLNGYT(1)PSR ; 304.03 1.96E-57 648300000 289050 297480 238250 91882 313990 257000 335900 335820 229050 310550 TRUE FALSE FALSE 268789.0877 273906.6014 330506.7806 213905.9395 274606.4464 225293.953 251854.2672 259361.1169 248904.2384 232786.2587 1.154660456 1.176644201 1.41978647 0.918894185 1.179650586 0.967814657 1.081912088 1.11415991 1.069239395 1 17.82864637 -5.268962245 24.99994475 1.055772909 1.242991761 0.480968319 0.096261728 499.9554572 1661449.322 0.026100074 0.03957716 5.38E-06 5.268962245 0.187218852 QTPEVPAERS(ph)PRR ddPTM_HeLa_A486_30min_R1 1 QTPEVPAERSPRR 13 2 Q9UJF2 Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 QTPEVPAERS(1)PRR 61.641 0.018664 418700000 81321 167000 388130 1844.4 340250 57363 42184 84235 172660 16195 TRUE FALSE FALSE 75620.81784 153766.3118 538424.3305 4293.856411 297572.6723 50286.13628 31629.11702 65056.52934 187626.3078 12139.66659 6.229233504 12.66643616 44.3524809 0.353704641 24.51242546 4.142299619 2.605435396 5.35900462 15.45563928 1 13.56744118 -6.277265042 24.11128643 5.790722286 17.87308143 0.208587088 11.59425655 851.292275 1296986.837 4.043863968 3.579451003 5.28E-07 6.277265042 12.08235914 QTPMAS(ph)SPRPK ddPTM_HeLa_A485_30min_R1 4 QTPMASSPRPK 11 1 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK4 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 QT(0.01)PMAS(0.599)S(0.391)PRPK;QT(0.002)PMAS(0.614)S(0.384)PRPK;QTPMAS(0.5)S(0.5)PRPK;QTPMAS(0.625)S(0.375)PRPK ;;; 102.73 0.00085048 910478000 763210 893320 697100 1095320 1152410 921320 1339590 1803470 895320 1846720 TRUE FALSE FALSE 932983.4315 997786.0031 954986.2988 1155154.558 1037672.014 969558.8906 1053375.653 1361166.155 1075002.512 1386366.69 0.672970173 0.719712909 0.688841059 0.833224403 0.748483083 0.699352413 0.759810273 0.981822605 0.77540994 1 20.40287747 -7.856877036 0.267458921 1.048618452 0.663973491 0.601319396 0.069929246 1.526636902 0.387549625 0.220977874 0.150472457 1.39E-08 7.856877036 -0.38464496 QTPMAS(ph)SPRPK ddPTM_HeLa_A486_30min_R1 2 QTPMASSPRPK 11 1 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK4 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 QTPMAS(0.5)S(0.5)PRPK;QTPMAS(0.5)S(0.5)PRPK ; 130.2 2.11E-05 680410000 711610 626480 395200 285700 651810 688910 848700 765070 497390 862600 TRUE FALSE FALSE 661729.8138 576835.4432 548232.0238 665124.0385 570053.9119 603919.2885 636346.2834 590880.2624 540504.1657 646599.3454 1.023400068 0.892106445 0.847869748 1.028649415 0.881618449 0.93399304 0.984143099 0.913827499 0.835918207 1 19.30251252 -7.508002427 24.82248309 0.903597029 0.937769589 0.017803233 0.067045132 2165.982497 3614172.575 0.037216748 0.016861533 3.10E-08 7.508002427 0.03417256 QTPMASS(ph)PRPK ddPTM_HeLa_A485_30min_R1 1 QTPMASSPRPK 11 1 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK4 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 QT(0.001)PMAS(0.163)S(0.836)PRPK 75.96 0.0047384 427900000 165490 194900 152220 227940 261560 215430 307610 405760 184450 419920 TRUE FALSE FALSE 202302.6796 217691.8596 208532.5124 240391.785 235518.168 226709.5817 241886.6106 306246.7238 221467.4231 315241.6721 0.641738379 0.690555466 0.661500464 0.762563475 0.747103536 0.719161208 0.767305315 0.9714665 0.702532193 1 18.26609873 -11.66130129 0.043708546 2.057279565 1.99E-09 0.636260315 0.070234692 265.4581785 1.361125572 48.1481945 20.66622781 2.18E-12 11.66130129 -2.057279563 QTPMASS(ph)PRPK ddPTM_HeLa_A486_30min_R1 2 QTPMASSPRPK 11 1 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK4 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 QTPMAS(0.246)S(0.754)PRPK;QTPMAS(0.136)S(0.864)PRPK ; 105.46 0.00098733 366180000 784720 770330 416860 343980 774800 834440 1021940 963490 585250 1040000 TRUE FALSE FALSE 729715.1803 709286.2453 578279.3559 800802.8238 677617.3593 731495.2768 766239.803 744124.3598 635979.9412 779577.2307 0.936039627 0.909834481 0.741785846 1.027227056 0.869211327 0.93832304 0.982891461 0.954522952 0.815801073 1 19.57233243 -5.281155178 24.90741895 0.937869969 0.867281392 0.186228997 0.074867698 1400.131769 1768815.197 0.020753188 0.030836014 5.23E-06 5.281155178 -0.070588576 QTPS(ph)PDVVLR ddPTM_HeLa_A485_30min_R1 5 QTPSPDVVLR 10 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 QTPS(1)PDVVLR;QT(0.002)PS(0.998)PDVVLR;QT(0.056)PS(0.944)PDVVLR;QT(0.004)PS(0.996)PDVVLR;QTPS(1)PDVVLR ;;;; 212.83 1.64E-14 9263030000 2031470 3085990 2980650 2021060 3350490 2679840 3015210 3312920 2596420 2681360 TRUE FALSE FALSE 2483363.493 3446869.686 4083316.47 2131465.39 3016903.451 2820152.279 2370985.751 2500421.176 3117497.678 2012946.299 1.233695849 1.712350542 2.028527275 1.058878417 1.498750092 1.40100721 1.177868358 1.242169837 1.548723719 1 20.94087725 -5.274049262 24.99948962 1.295916192 1.663607182 0.337940408 0.244344246 877.1651925 1739005.904 0.068124452 0.101822718 5.32E-06 5.274049262 0.367690989 QTPS(ph)PDVVLR ddPTM_HeLa_A486_30min_R1 7 QTPSPDVVLR 10 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 QT(0.001)PS(0.999)PDVVLR;QTPS(1)PDVVLR;QTPS(1)PDVVLR;QTPS(1)PDVVLR;QTPS(1)PDVVLR;QT(0.001)PS(0.999)PDVVLR;QT(0.011)PS(0.989)PDVVLR ;;;;;; 240.18 6.83E-21 13281870000 4017480 4329400 3694850 1346150 4911920 3819430 4362140 4560950 3672120 4316380 TRUE FALSE FALSE 3735875.398 3986322.577 5125594.872 3133905.231 4295821.192 3348227.56 3270686.434 3522521.25 3990422.318 3235530.353 1.154640813 1.232046107 1.584159106 0.968590892 1.327702331 1.034831139 1.010865632 1.0886998 1.233313208 1 21.62557078 -5.287843836 24.99945237 1.102254505 1.314458562 0.337491679 0.146450882 879.5081199 832706.5294 0.040988869 0.060816373 5.15E-06 5.287843836 0.212204056 QTPSLPEPKPVYAQVGQPDVDLPVS(ph)PSDGVLPNSTHEDGILRPSMK ddPTM_HeLa_A485_30min_R1 2 QTPSLPEPKPVYAQVGQPDVDLPVSPSDGVLPNSTHEDGILRPSMK 46 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 QTPSLPEPKPVYAQVGQPDVDLPVS(0.801)PS(0.198)DGVLPNSTHEDGILRPSMK;QTPSLPEPKPVYAQVGQPDVDLPVS(0.985)PS(0.015)DGVLPNSTHEDGILRPSMK ; 181.9 2.46E-23 943830000 227145 238388 198361 150060 304598 250991 376330 390010 229277 300732 TRUE FALSE FALSE 277672.6216 266265.4029 271742.9884 158257.3978 274271.1536 264132.5007 295924.0212 294359.436 275290.7908 225765.047 1.229918561 1.179391613 1.20365394 0.700982725 1.214852154 1.169944171 1.310761011 1.303830863 1.219368519 1 17.78446262 -5.950694084 24.99999304 1.222843212 1.077545294 0.119468221 0.160639679 217.5972273 110328.9713 0.050948149 0.057769765 1.12E-06 5.950694084 -0.145297919 QTPTHPLT(ph)PR ddPTM_HeLa_A485_30min_R1 2 QTPTHPLTPR 10 0 Q13415 Q13415 ORC1 Origin recognition complex subunit 1 1 0 QTPTHPLT(1)PR;QTPTHPLT(1)PR ; 85.536 0.0017004 376780000 363240 503820 446460 315820 543310 451660 523040 599740 401770 442810 TRUE FALSE FALSE 444041.4848 562737.3663 611624.1328 333072.4469 489216.1487 475308.2192 411288.2312 452652.8246 482401.5537 332425.6163 1.335761936 1.692821909 1.839882677 1.00194579 1.471655988 1.429818269 1.237233868 1.361666497 1.451156379 1 18.34267203 -12.25445484 0.084617038 3.36E-10 1.852672397 0.285947324 0.212978941 204.1705356 1.749427745 45.27503795 7.221404546 5.57E-13 12.25445484 1.852672397 QTPTHPLT(ph)PR ddPTM_HeLa_A486_30min_R1 2 QTPTHPLTPR 10 0 Q13415 Q13415 ORC1 Origin recognition complex subunit 1 1 0 QTPTHPLT(1)PR;QTPTHPLT(1)PR ; 117.93 0.00046772 657770000 645000 636530 548100 166552 656080 532170 566940 588860 511990 555820 TRUE FALSE FALSE 599788.8308 586089.0446 760338.9986 387741.4731 573788.3287 466516.2761 425085.6155 454789.4327 556369.7054 416639.0542 1.439588595 1.406706929 1.824934535 0.930641209 1.377183255 1.119713266 1.020273091 1.091566977 1.335375788 1 18.66843855 -5.268254026 24.98107793 1.134708225 1.542039714 0.580084575 0.168188428 378.6777408 1388153.884 0.046155314 0.070226624 5.39E-06 5.268254026 0.407331489 QTQS(ph)ASSTLQK ddPTM_HeLa_A485_30min_R1 1 QTQSASSTLQK 11 0 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 QTQS(0.996)AS(0.003)S(0.001)T(0.001)LQK 192.35 5.91E-15 0 237600 223330 153780 215740 265860 261870 367370 348320 202390 398490 TRUE FALSE FALSE 290453.3003 249446.5008 210669.6213 227525.3299 239390.0449 275581.1083 288878.3984 262893.9739 243007.8166 299153.7767 0.970916375 0.833840387 0.704218491 0.760563121 0.800224044 0.92120217 0.965651852 0.878792094 0.812317395 1 18.19052775 -6.259991288 24.45186885 0.911145908 0.805994954 0.290009377 0.078874056 133.8726796 2260530.404 0.028253193 0.026813123 5.50E-07 6.259991288 -0.105150954 QTQS(ph)ASSTLQK ddPTM_HeLa_A486_30min_R1 2 QTQSASSTLQK 11 0 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 QTQS(0.997)AS(0.001)S(0.001)T(0.001)LQK;QTQS(0.996)AS(0.002)S(0.002)TLQK ; 164.53 1.54E-07 244360000 540560 554890 359660 209639 624280 584760 690420 669660 540850 782330 TRUE FALSE FALSE 502669.5355 510918.4955 498929.984 488050.1866 545976.9812 512618.2566 517669.6135 517193.0366 587731.3135 586429.4759 0.857169628 0.871236042 0.850792814 0.832240204 0.931018995 0.874134534 0.882748284 0.881935608 1.002219939 1 19.16159809 -7.748175781 5.414577528 1.003485198 0.872312644 0.817872014 0.024273625 0.065583865 5.711726293 0.020363193 0.006453973 1.79E-08 7.748175781 -0.131172554 QTQSESSNYDS(ph)ELEK ddPTM_HeLa_A485_30min_R1 1 QTQSESSNYDSELEK 15 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QTQSESSNYDS(1)ELEK 274.45 3.45E-58 354730000 145110 130440 82400 186880 133220 108000 193020 173530 101190 246390 TRUE FALSE FALSE 177389.2189 145693.8233 112883.189 197088.7812 119956.149 113654.713 151779.7002 130971.4954 121497.9048 184969.5075 0.959018712 0.787664006 0.610279989 1.065520387 0.648518508 0.614451077 0.820566061 0.708070737 0.656853697 1 17.49692793 -4.287093317 4.449104494 0.755028376 0.968931239 0.124996337 0.149961028 0.348902122 16.35369832 0.036189726 0.220204845 5.16E-05 4.287093317 0.213902863 QTQSESSNYDS(ph)ELEK ddPTM_HeLa_A486_30min_R1 1 QTQSESSNYDSELEK 15 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QTQSESSNYDS(1)ELEK 285.5 1.91E-68 0 143050 135420 57265 53532 85779 126720 178690 139710 106840 196730 TRUE FALSE FALSE 133022.9337 124688.826 79439.54161 124625.2014 75019.79796 111086.5748 133979.872 107901.0828 116100.9772 147467.5275 0.902048986 0.845534119 0.538691758 0.845102671 0.508720796 0.75329516 0.908538132 0.731693849 0.787298595 1 17.17003778 -8.933924064 0.595824807 1.014376931 0.739317856 0.242274083 0.130056376 5.720983519 2.510551648 0.335182386 0.055623259 1.16E-09 8.933924064 -0.275059075 QTQSESSNYDS(ph)ELEKEIK ddPTM_HeLa_A486_30min_R1 1 QTQSESSNYDSELEKEIK 18 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QTQSESSNYDS(1)ELEKEIK 135.68 1.98E-09 0 72615 65792 28765 74356 74576 94503 164960 145230 50325 141920 TRUE FALSE FALSE 67525.06348 60578.40231 39903.57835 173104.5257 65221.98269 82844.1807 123685.2632 112164.2993 54687.21152 106382.3083 0.634739597 0.569440571 0.375096001 1.627192797 0.613090501 0.778740206 1.162648802 1.054351059 0.514063028 1 16.69889872 QTQT(ph)PDLLPEALEAQVLPR ddPTM_HeLa_A485_30min_R1 1 QTQTPDLLPEALEAQVLPR 19 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 QT(0.156)QT(0.844)PDLLPEALEAQVLPR 79.013 0.013891 14138000 7729.1 9358.9 9577.4 6315.6 9148.4 8505.4 10469 11905 6415.8 7876.7 TRUE FALSE FALSE 9448.41163 10453.34194 13120.47881 6660.605236 8237.553174 8950.729592 8232.212626 8985.280084 7703.392211 5913.18365 1.597855265 1.767802687 2.218851905 1.126399184 1.393082587 1.513690445 1.392179427 1.519533405 1.302748683 1 12.52971937 -1.000001036 0.062975638 0.323618356 4.042542096 0.409284705 0.248732224 323.2908804 1.519405712 17.40092703 109.0086294 0.099999762 1.000001036 3.71892374 QTQT(ph)PDLLPEALEAQVLPR ddPTM_HeLa_A486_30min_R1 2 QTQTPDLLPEALEAQVLPR 19 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 QT(0.042)QT(0.958)PDLLPEALEAQVLPR;QT(0.02)QT(0.98)PDLLPEALEAQVLPR ; 123.55 3.00E-05 21558000 16873.8 19120.5 13756.3 4518.4 17050.7 12336.4 16108.2 13595.7 13693.6 13983.2 TRUE FALSE FALSE 15691.03376 17605.32194 19083.10777 10519.06355 14912.04221 10814.4604 12077.75798 10500.2559 14880.57227 10481.7157 1.49699097 1.679622157 1.820609174 1.003563142 1.422671883 1.03174525 1.152269182 1.001768813 1.419669517 1 13.35558726 -5.261624342 24.99999457 1.154313266 1.667128918 0.668272666 0.167309492 9.40296184 1271000.128 0.044342147 0.070805606 5.47E-06 5.261624342 0.512815652 QTS(ph)IETDR ddPTM_HeLa_A485_30min_R1 1 QTSIETDR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 QT(0.096)S(0.9)IET(0.004)DR 77.124 0.011369 527160000 806900 1034200 905140 781670 1107200 915730 1025000 1062300 873830 1066300 TRUE FALSE FALSE 986392.1212 1155140.694 1239988.952 824370.6528 996963.2804 963676.2068 806000.3765 801769.2594 1049199.666 800491.0338 1.232233816 1.44304014 1.549035404 1.029831214 1.245439659 1.203856341 1.006882454 1.001596802 1.310695088 1 19.61052572 -5.267238237 24.99885026 1.11886166 1.411596825 0.530644304 0.126665001 362.71907 1563680.7 0.035694784 0.054580777 5.40E-06 5.267238237 0.292735164 QTTFLGS(ph)PGPR ddPTM_HeLa_A486_30min_R1 1 QTTFLGSPGPR 11 0 Q9H0X9-3;Q9H0X9-2;Q9H0X9;E9PNH0;H0YCD7 Q9H0X9-3 OSBPL5 Oxysterol-binding protein-related protein 5;Oxysterol-binding protein 1 0 QTT(0.003)FLGS(0.997)PGPR 86.756 0.0032533 137590000 119020 132360 106420 40903 160680 130260 154340 139370 126870 142480 TRUE FALSE FALSE 110677.3126 121871.3116 147628.674 95224.25112 140526.0161 114189.8456 115722.4996 107638.4934 137867.1938 106802.0806 1.036284237 1.141094919 1.382264027 0.891595469 1.315761035 1.069172482 1.083522895 1.007831428 1.290866179 1 16.70458023 QTVAVGVIK ddPTM_HeLa_A485_30min_R1 2 QTVAVGVIK 9 0 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 0 0 ; ; 164.68 8.55E-06 1265940000 2106200 2244300 1809820 2137000 2823100 2294800 3050500 3314300 2010400 2804400 FALSE FALSE TRUE 2574716.924 2506751.362 2479347.731 2253738.899 2542022.251 2414952.18 2398735.755 2501462.728 2413868.84 2105314.691 1.222960603 1.190677751 1.177661345 1.070499773 1.207431014 1.147074207 1.139371594 1.188165712 1.146559633 1 21.00560447 -13.77697267 0.273979895 6.21E-12 1.175800439 0.610541518 0.040174762 133.4795922 1.451498596 75.40039418 0.049391756 1.67E-14 13.77697267 1.175800439 QTVAVGVIK ddPTM_HeLa_A486_30min_R1 2 QTVAVGVIK 9 0 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 0 0 ; ; 179.37 7.53E-08 767150000 1738850 1677220 1134340 587870 1843120 1747850 1992410 1914110 1367970 1960570 FALSE FALSE TRUE 1616965.594 1544310.979 1573586.827 1368591.069 1611938.703 1532218.038 1493887.944 1478308.938 1486546.741 1469630.511 1.100253147 1.050815812 1.070736362 0.931248405 1.096832633 1.042587253 1.016505804 1.005905176 1.011510533 1 20.48702205 -5.066747242 24.99999789 1.018368637 1.071847635 0.309103528 0.040156611 237.2526561 88861.42091 0.010770306 0.018654727 8.58E-06 5.066747242 0.053478998 QTVGTK(ac)QPK ddPTM_HeLa_A485_30min_R1 2 QTVGTKQPK 9 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 0 1 ; QTVGTK(1)QPK;QTVGTK(1)QPK 218.58 2.52E-16 141935000 129104 143064 108171 136016 191396 148231 214900 235800 136316 213600 FALSE TRUE FALSE 157822.7394 159794.0903 148187.9543 143446.2097 172339.9422 155992.146 168984.8594 177969.6803 163673.3708 160353.451 0.984217916 0.996511701 0.92413324 0.89456266 1.074750441 0.972801926 1.053827394 1.109858747 1.020703763 1 17.29089588 -5.770761563 24.99968419 1.041615747 0.951351531 0.486708865 0.044602838 176.9483446 474528.3563 0.014445986 0.016598 1.70E-06 5.770761563 -0.090264216 QTVGTK(ac)QPK ddPTM_HeLa_A486_30min_R1 2 QTVGTKQPK 9 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 0 1 ; QTVGTK(1)QPK;QTVGTK(1)QPK 209.6 7.75E-12 102900000 81255 79745 51046 28803.5 86201 87109 93462 95916 64102 97339 FALSE TRUE FALSE 75559.4441 73425.71577 70812.37826 67056.00365 75388.86679 76362.37724 70076.81906 74078.02063 69658.41297 72964.68083 1.035561908 1.006318604 0.970502131 0.919020037 1.033224101 1.046566316 0.9604211 1.015258613 0.954686736 1 16.15491066 -4.415562576 3.581939861 0.988324463 1.034948932 0.140342247 0.036521599 0.535720459 11.41732525 0.009658896 0.050519965 3.84E-05 4.415562576 0.046624468 QTVPSENIPLPECS(ph)SPPSCKR ddPTM_HeLa_A485_30min_R1 1 QTVPSENIPLPECSSPPSCKR 21 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 QTVPSENIPLPECS(0.59)S(0.405)PPS(0.005)CKR 94.003 0.00050017 223740000 99019 97907 90390 130390 147160 117240 147230 154430 94960 171540 TRUE FALSE FALSE 121045.4349 109356.372 123829.0224 137512.8755 132508.2337 123378.5051 115773.1077 116555.8004 114017.601 128778.235 0.939952586 0.849183653 0.961567943 1.067826994 1.028964512 0.958069546 0.89901145 0.905089283 0.885379436 1 16.97452926 -9.572815814 12.33967711 0.999999993 0.94573087 0.066934791 0.06250588 0 0 0.068478041 0.016608364 2.67E-10 9.572815814 -0.054269123 QTVPSENIPLPECS(ph)SPPSCKR ddPTM_HeLa_A486_30min_R1 1 QTVPSENIPLPECSSPPSCKR 21 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 QTVPSENIPLPECS(0.5)S(0.466)PPS(0.034)CKR 78.429 0.0021124 280760000 29092 22604 11673 12771 26172 17373 31332 25332 11706 40516 TRUE FALSE FALSE 27052.80103 20812.77672 16193.09821 29731.53341 22889.26372 15229.6959 23492.4022 19564.45659 12720.68551 30370.52989 0.890758282 0.685295146 0.53318458 0.978959983 0.75366692 0.501462963 0.773526254 0.644192138 0.41884964 1 14.89038446 -4.260690276 22.00739356 0.689137674 0.890758416 0.090076672 0.180707351 28.90852416 848286.9626 0.043670674 0.253368621 5.49E-05 4.260690276 0.201620741 QVAEQGGDLS(ph)PAANR ddPTM_HeLa_A485_30min_R1 5 QVAEQGGDLSPAANR 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR ;;;; 283.22 1.43E-58 4421840000 1828651 2514748 2490310 1744651 2700348 2470937 2883341 3101813 2138155 2481695 TRUE FALSE FALSE 2235428.106 2808825.903 3411579.299 1839956.866 2431491.872 2600311.441 2267291.641 2341088.498 2567263.096 1863054.109 1.199872884 1.507645908 1.83117564 0.987602484 1.305110711 1.395725131 1.216975734 1.256586423 1.377986331 1 20.82923814 -13.55890895 0.107158315 3.63E-12 1.559838897 0.206324837 0.208229267 247.6737456 1.953803593 56.17644411 2.997731445 2.76E-14 13.55890895 1.559838897 QVAEQGGDLS(ph)PAANR ddPTM_HeLa_A486_30min_R1 4 QVAEQGGDLSPAANR 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR ;;; 296.46 7.30E-84 4268210000 2311680 2615380 2240220 664110 2926380 2184360 2397950 2413500 2165180 2167330 TRUE FALSE FALSE 2149643.17 2408127.764 3107693.179 1546081.642 2559326.133 1914875.872 1797957.547 1863998.736 2352859.546 1624616.461 1.323169635 1.48227463 1.912878057 0.951659471 1.575341746 1.178663345 1.106696621 1.147346947 1.44825539 1 20.63166774 -5.269926915 24.99946545 1.217997478 1.563724167 0.363245002 0.224612577 700.5372561 2063384.575 0.061927615 0.093525059 5.37E-06 5.269926915 0.345726689 QVAPEK(ac)PVK ddPTM_HeLa_A485_30min_R1 1 QVAPEKPVK 9 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 QVAPEK(1)PVK 112.71 0.017824 50790000 85683 79751 82704 113950 112300 92040 112840 109910 102950 194020 FALSE TRUE FALSE 104742.8877 89077.18571 113299.6512 120174.8 101119.0177 96859.07208 88730.81218 82954.40017 123611.1207 145654.3847 0.719119359 0.611565425 0.777866396 0.825068193 0.694239435 0.664992491 0.609187374 0.569529028 0.848660485 1 17.15218961 -7.994516539 5.988397874 0.999814931 0.687174147 0.655311234 0.073859462 0.081823928 12.7392429 0.078209673 0.020301323 1.01E-08 7.994516539 -0.312640784 QVAPEK(ac)PVK ddPTM_HeLa_A486_30min_R1 2 QVAPEKPVK 9 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ; QVAPEK(1)PVK;QVAPEK(1)PVK 121.73 0.0086045 105265000 246230 312260 218050 94763 328090 356770 345100 339240 293020 370100 FALSE TRUE FALSE 228970.5485 287515.3804 302484.7996 220613.0531 286937.8929 312755.3448 258752.3299 262002.4576 318419.2095 277424.5511 0.825343495 1.036373238 1.090331762 0.795218203 1.034291636 1.127352801 0.932694417 0.944409774 1.147768676 1 18.08173594 QVAPEKPVK(ac)K ddPTM_HeLa_A485_30min_R1 1 QVAPEKPVKK 10 2 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 QVAPEKPVK(1)K 109.6 0.0025238 0 12686 13415 18472 18088 19483 19176 38945 42056 32916 74503 FALSE TRUE FALSE 15507.95693 14983.76756 25305.56148 19076.10164 17543.20411 20180.02571 30624.0826 31741.70006 39521.93928 55930.77323 0.277270562 0.267898452 0.452444335 0.341066296 0.313659245 0.360803625 0.547535477 0.567517633 0.706622437 1 15.77135465 -7.80435818 0.616143053 1.005766115 0.313125635 0.937604967 0.054833428 0.177604092 0.160407161 0.058356906 0.026625484 1.57E-08 7.80435818 -0.692640479 down QVAPEKPVK(ac)K ddPTM_HeLa_A486_30min_R1 1 QVAPEKPVKK 10 2 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 QVAPEKPVK(1)K 119.76 0.0016111 0 48118 57339 43208 26984 63026 71930 71555 73615 54364 97063 FALSE TRUE FALSE 44745.17668 52795.24881 59939.29475 62820.1157 55120.69139 63056.00793 53651.18217 56854.4715 59076.31529 72757.79303 0.614988097 0.725630158 0.823819584 0.863414255 0.75759158 0.866656413 0.737394304 0.781421057 0.811958594 1 16.15081416 -14 0.116451642 1.659962673 0.673218976 0.547851346 0.065528665 141.8671578 1.079183472 22.54176823 0.748300476 1.00E-14 14 -0.986743697 QVDLESNPQNRS(ph)PESRPSVVYPSTK ddPTM_HeLa_A485_30min_R1 1 QVDLESNPQNRSPESRPSVVYPSTK 25 2 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 QVDLES(0.036)NPQNRS(0.913)PES(0.051)RPSVVYPSTK 143.06 2.46E-09 402010000 297110 201560 200060 385590 356180 265710 407940 381230 266660 540680 TRUE FALSE FALSE 363201.0945 225130.6887 274070.5192 406653.8053 320717.4686 279622.1647 320780.2864 287732.7448 320176.216 405898.4265 0.894807841 0.554647848 0.675219467 1.001861005 0.790142183 0.688896893 0.790296945 0.70887869 0.788808715 1 18.63075922 -8.041949801 20.54207369 1.000000003 0.759781373 0.268708295 0.116419004 1057.864619 518019.0488 0.114500115 0.029563802 9.08E-09 8.041949801 -0.24021863 QVDLESNPQNRS(ph)PESRPSVVYPSTK ddPTM_HeLa_A486_30min_R1 1 QVDLESNPQNRSPESRPSVVYPSTK 25 2 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 QVDLES(0.023)NPQNRS(0.809)PES(0.168)RPSVVYPSTK 90.98 0.0014258 164280000 251290 222130 129510 132130 247060 286430 341720 337690 185060 361580 TRUE FALSE FALSE 233675.8687 204527.6098 179659.7404 307605.3175 216071.4311 251093.1788 256218.0417 260805.3587 201101.1498 271038.0145 0.86215164 0.754608575 0.662858089 1.134915772 0.797199727 0.926413143 0.945321423 0.962246418 0.741966584 1 18.04813569 -5.23104311 24.99976002 0.923140485 0.759346364 0.331835238 0.110170145 816.6337343 671648.9655 0.028671454 0.04965259 5.87E-06 5.23104311 -0.163794121 QVDLESNPQNRS(ph)PESRPSVVYPSTKFPR ddPTM_HeLa_A485_30min_R1 3 QVDLESNPQNRSPESRPSVVYPSTKFPR 28 3 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 QVDLES(0.003)NPQNRS(0.993)PES(0.004)RPSVVYPSTKFPR;QVDLESNPQNRS(0.999)PES(0.001)RPSVVYPSTKFPR;QVDLES(0.05)NPQNRS(0.948)PES(0.001)RPSVVYPSTKFPR ;; 168.87 5.19E-14 1090980000 174515 330352 245435 147991 342334 364150 398082 617640 231458 199799 TRUE FALSE FALSE 213335.2597 368983.7927 336231.6199 156075.3736 308250.025 383216.3309 313028.5287 466162.8216 277909.4975 149992.7863 1.422303465 2.460010256 2.241651936 1.040552532 2.055098998 2.554898407 2.086957222 3.107901606 1.852819088 1 17.19453359 -5.998098891 24.99711955 2.256254786 1.830679332 0.036348331 0.627703396 158.0917214 2078644.286 0.189852327 0.213868221 1.00E-06 5.998098891 -0.425575454 QVDQLTNDK ddPTM_HeLa_A485_30min_R1 2 QVDQLTNDK 9 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ; ; 135.72 0.0011713 70438000 48271 53937 48762 64467 64518 56764 69879 67025 53000 91756 FALSE FALSE TRUE 59008.71742 60244.46296 66801.09296 67988.66897 58094.36138 59736.07527 54948.78079 50587.01366 63636.61386 68882.91784 0.856652408 0.874592204 0.969777342 0.987017843 0.843378347 0.867211743 0.797712735 0.734391272 0.923837373 1 16.07185864 -5.802109683 24.87775411 0.84494542 0.92203494 0.111966862 0.076318452 243.2153537 148771.8495 0.023794978 0.026981298 1.58E-06 5.802109683 0.07708952 QVEPPAKKPATPAEDDEDDDIDLFGS(ph)DNEEEDK ddPTM_HeLa_A485_30min_R1 1 QVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDK 33 2 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDK 212.6 3.72E-30 133050000 113930 158560 40695 77396 54923 170700 222950 334960 59822 86284 TRUE FALSE FALSE 139273.3354 177102.2127 55749.77396 81623.9475 49454.67327 179637.588 175314.9112 252810.5348 71827.72668 64774.98674 2.150109826 2.734114226 0.860668242 1.260115233 0.763484113 2.773255497 2.706521761 3.902903691 1.108880608 1 15.98314919 -6.283889224 24.85269358 2.505256921 1.564465047 0.112707344 0.960312522 1329.431064 1471717.524 0.339446048 0.299583701 5.20E-07 6.283889224 -0.940791874 QVEPPAKKPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_A485_30min_R1 3 QVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 39 3 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;; 283.23 2.34E-79 14502200000 2857698 3338042 1099180 2782538 3118183 5507297 9753070 12862100 2290079 4307110 TRUE FALSE FALSE 3493383.061 3728396.975 1505812.423 2934541.005 2807725.752 5795650.555 7669246.919 9707649.808 2749676.849 3233426.743 1.080396539 1.153079154 0.465701728 0.907563782 0.868343703 1.792417461 2.371863514 3.002279185 0.850390953 1 21.62463249 -6.312062557 4.267376483 1.983155225 0.882036955 0.340356184 0.611206412 0.217308877 8.514700095 0.216082776 0.193316981 4.87E-07 6.312062557 -1.10111827 QVEPPAKKPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_A486_30min_R1 5 QVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 39 3 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;;;; 340.35 3.89E-130 61650200000 7762244 4296168 1957076 5204040 5275949 5947076 11869560 11222840 2686208 15226620 TRUE FALSE FALSE 7218150.78 3955724.001 2714908.24 12115268.12 4614190.28 5213386.229 8899670.545 8667644.325 2919050.672 11413775.24 0.632406949 0.346574548 0.237862423 1.061460197 0.404265038 0.45676265 0.779730664 0.759402051 0.255748042 1 23.44427272 -14 0.275397911 4.094367366 0.525483215 0.213296502 0.251494569 355.1829777 3.431220405 628.1813213 0.299902943 1.00E-14 14 -3.568884151 QVETEEAGVVTTATASVNLKVS(ph)PK ddPTM_HeLa_A485_30min_R1 16 QVETEEAGVVTTATASVNLKVSPK 24 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVT(0.002)T(0.002)AT(0.012)AS(0.065)VNLKVS(0.919)PK;QVETEEAGVVT(0.007)T(0.007)AT(0.024)AS(0.019)VNLKVS(0.944)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVT(0.005)T(0.033)AT(0.027)AS(0.049)VNLKVS(0.886)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVT(0.001)T(0.001)AT(0.005)AS(0.007)VNLKVS(0.986)PK;QVETEEAGVVT(0.078)T(0.078)AT(0.078)AS(0.078)VNLKVS(0.689)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVTTAT(0.001)AS(0.018)VNLKVS(0.981)PK;QVETEEAGVVT(0.005)T(0.005)AT(0.004)AS(0.005)VNLKVS(0.98)PK;QVETEEAGVVT(0.002)T(0.002)AT(0.002)AS(0.009)VNLKVS(0.985)PK;QVETEEAGVVT(0.021)T(0.021)AT(0.021)AS(0.081)VNLKVS(0.855)PK;QVETEEAGVVT(0.004)T(0.004)AT(0.004)AS(0.017)VNLKVS(0.971)PK;QVETEEAGVVTTAT(0.001)AS(0.003)VNLKVS(0.996)PK ;;;;;;;;;;;;;;; 225.05 1.56E-38 1720677400 757650 604381.4 372670.3 1284652 793637.6 652754.7 1326750 1256498 590178 1986044 TRUE FALSE FALSE 926186.6286 675058.5473 510536.5521 1354829.286 714620.2539 686931.9267 1043279.024 948339.8954 708621.3112 1490959.781 0.621201618 0.452767778 0.342421411 0.908696065 0.479302167 0.460731359 0.69973653 0.636060011 0.475278623 1 20.50780991 -14 0.338952362 5.649203744 0.549970541 0.418041232 0.153324507 389.642281 3.303351384 1310.286675 0.125274724 1.00E-14 14 -5.099233203 QVETEEAGVVTTATASVNLKVS(ph)PK ddPTM_HeLa_A486_30min_R1 14 QVETEEAGVVTTATASVNLKVSPK 24 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QVETEEAGVVT(0.002)T(0.013)AT(0.002)AS(0.003)VNLKVS(0.98)PK;QVETEEAGVVTTAT(0.001)AS(0.004)VNLKVS(0.996)PK;QVETEEAGVVTTAT(0.002)AS(0.002)VNLKVS(0.996)PK;QVETEEAGVVTTAT(0.001)AS(0.004)VNLKVS(0.995)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVT(0.065)T(0.056)AT(0.014)AS(0.003)VNLKVS(0.862)PK;QVETEEAGVVT(0.008)T(0.008)AT(0.008)AS(0.033)VNLKVS(0.943)PK;QVETEEAGVVT(0.002)T(0.002)AT(0.002)AS(0.002)VNLKVS(0.993)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVTTATASVNLKVS(1)PK;QVETEEAGVVTT(0.005)AT(0.001)AS(0.003)VNLKVS(0.991)PK;QVETEEAGVVT(0.001)T(0.001)ATASVNLKVS(0.998)PK;QVETEEAGVVT(0.199)T(0.158)AT(0.026)AS(0.022)VNLKVS(0.594)PK;QVETEEAGVVTTAT(0.001)AS(0.005)VNLKVS(0.993)PK ;;;;;;;;;;;;; 253.93 1.82E-61 1702126000 1049581 851416 376408.2 1494866 688077.7 1186188 1683199 1192775 686657.8 1832999 TRUE FALSE FALSE 976010.7919 783946.6954 522163.5356 3480123.594 601772.5788 1039848.185 1262044.807 921206.1706 746177.851 1374004.12 0.710340514 0.570556292 0.380030546 2.53283345 0.437969996 0.756801359 0.918516029 0.670453718 0.543068132 1 20.3899549 QVFDYAYIVLSHAVSPLAR ddPTM_HeLa_A485_30min_R1 1 QVFDYAYIVLSHAVSPLAR 19 0 A0A0X1KG68;Q5XG87;Q5XG87-2 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 0 0 104.86 5.37E-05 2647800 5104 6520.9 7453.2 5280 8975.9 5583.2 7173.8 7056.5 6399.1 7246.5 FALSE FALSE TRUE 6239.367191 7283.462531 10210.44883 5568.43303 8082.22788 5875.527719 5641.059025 5325.882311 7683.340674 5440.080912 1.14692544 1.338851875 1.876892825 1.023593788 1.485681557 1.080044178 1.036943957 0.979007922 1.412357794 1 12.40941239 -6.273087751 24.0047875 1.096313308 1.38084305 0.246311899 0.238301194 636.1075302 1310875.709 0.082814123 0.073705759 5.33E-07 6.273087751 0.284529742 QVHPDTGISS(ph)K ddPTM_HeLa_A486_30min_R1 2 QVHPDTGISSK 11 0 P58876;Q96A08;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 1 0 QVHPDTGIS(0.043)S(0.957)K;QVHPDTGIS(0.032)S(0.968)K ; 149.22 5.16E-07 768310000 1365680 1167380 601520 636970 1156010 1207030 1398780 1379890 977920 1794970 TRUE FALSE FALSE 1269952.884 1074872.557 834444.6533 1482898.351 1011012.446 1058118.911 1048790.449 1065719.17 1062686.893 1345497.829 0.943853537 0.798866066 0.620175399 1.102118724 0.751403997 0.786414432 0.779481339 0.792063091 0.789809445 1 20.35970863 QVHPDTGISSK ddPTM_HeLa_A485_30min_R1 6 QVHPDTGISSK 11 0 P58876;Q96A08;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;;;;; ;;;;; 175.48 4.44E-08 6074810000 4990052 6201560 5227378 4659563 6799880 6514921 7957550 8934880 5162209 6811150 FALSE FALSE TRUE 6100071.852 6926778.496 7161202.652 4914103.128 6122860.071 6856032.19 6257354.435 6743586.671 6198216.996 5113255.655 1.192991758 1.354670872 1.400517231 0.961051717 1.197448453 1.340835009 1.223751531 1.318844025 1.212186015 1 22.28581073 -8.035079795 21.56257604 0.999999996 1.249363654 0.287064976 0.116954811 1135.038427 697677.6623 0.116399933 0.030054299 9.22E-09 8.035079795 0.249363658 QVHPDTGISSK ddPTM_HeLa_A486_30min_R1 7 QVHPDTGISSK 11 0 P58876;Q96A08;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99879;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99879;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BA;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-A;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 0 ;;;;;; ;;;;;; 173.76 6.99E-08 4562550000 6877070 6828270 5006910 1394497 10555870 6252940 7377010 7333860 5928250 6762630 FALSE FALSE TRUE 6395022.906 6287173.017 6945719.642 3246459.49 9231854.355 5481515.838 5531204.072 5664100.175 6442115.483 5069223.431 1.26153897 1.240263544 1.370174295 0.640425409 1.821157517 1.081332459 1.091134401 1.117350666 1.27082887 1 22.27333332 -13.99999999 0.159893078 0.222380332 1.263733851 0.052003784 0.277104211 463.8315023 4.258763482 114.1107876 1.146015591 1.00E-14 13.99999999 1.041353519 QVK(ac)K(ac)NGIVDR ddPTM_HeLa_A485_30min_R1 1 QVKKNGIVDR 10 2 A0A087WTW5;Q9UKL3 A0A087WTW5 CASP8AP2 CASP8-associated protein 2 0 2 QVK(1)K(1)NGIVDR 43.282 0.024009 0 11563 27349 41726 9866.6 26982 17802 19636 34404 37648 25730 FALSE TRUE FALSE 14135.14946 30547.22765 57162.18376 10405.58737 24295.57734 18734.08519 15440.60819 25966.36506 45203.60827 19315.98453 0.731785089 1.581448132 2.95932023 0.538703443 1.25779648 0.969874726 0.799369464 1.344294153 2.340217669 1 14.23750759 QVLEGEEIAYKFT(ph)PK ddPTM_HeLa_A486_30min_R1 1 QVLEGEEIAYKFTPK 15 1 Q03252 Q03252 LMNB2 Lamin-B2 1 0 QVLEGEEIAYKFT(1)PK 130 2.28E-05 72553000 157900 127800 73585 88032 115890 175860 214160 197350 120900 263670 TRUE FALSE FALSE 146832.0254 117672.6626 102079.0827 204942.9449 101353.9956 154164.1812 160574.9028 152417.7131 131379.7093 197645.3158 0.74290668 0.595372888 0.516476104 1.036922854 0.512807476 0.780004224 0.812439709 0.771167849 0.66472463 1 17.59255424 -14 0.154938368 2.01817041 0.63433043 0.256447527 0.147259655 185.5314049 1.678182991 58.26280975 0.669549247 1.00E-14 14 -1.38383998 QVLQSTQS(ph)PR ddPTM_HeLa_A485_30min_R1 8 QVLQSTQSPR 10 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQST(0.001)QS(0.999)PR;QVLQS(0.002)T(0.001)QS(0.998)PR;QVLQSTQS(1)PR ;;;;;;; 194.29 2.56E-10 13519170000 5358510 7256920 6681980 4674440 7347050 5839800 7045210 7489910 5500620 6404640 TRUE FALSE FALSE 6550492.063 8105553.667 9153922.462 4929792.821 6615551.905 6145562.898 5539943.329 5652997.829 6604543.979 4808081.117 1.362392169 1.685818827 1.903861903 1.025313987 1.375923522 1.278173714 1.15221503 1.175728465 1.373634059 1 22.19702981 -5.26631487 24.9980883 1.21354196 1.654203754 0.596397295 0.170551495 275.6931915 1413561.916 0.04701784 0.072308018 5.42E-06 5.26631487 0.440661793 QVLQSTQS(ph)PR ddPTM_HeLa_A486_30min_R1 8 QVLQSTQSPR 10 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR;QVLQSTQS(1)PR ;;;;;;; 206.03 5.91E-14 13363350000 4848600 4475030 3698202 1255146 4819930 3660367 3991540 4236070 3516943 4204330 TRUE FALSE FALSE 4508738.178 4120412.325 5130244.856 2922043.32 4215369.435 3208788.135 2992814.474 3271609.334 3821794.451 3151538.402 1.430646752 1.30742888 1.627854146 0.927179982 1.33755928 1.018165647 0.949636048 1.038099149 1.212675831 1 21.58762481 -5.265233507 24.99901968 1.074725329 1.440521823 0.623634438 0.137316442 217.5622509 1433492.324 0.037857162 0.058645104 5.43E-06 5.265233507 0.365796494 QVPGGGGGGGSGGGGGS(ph)GGGGSGGGR ddPTM_HeLa_A485_30min_R1 1 QVPGGGGGGGSGGGGGSGGGGSGGGR 26 0 K7EN53;K7EQC2;Q9UHB9-4;Q9UHB9-2;Q9UHB9 K7EN53 SRP68 Signal recognition particle subunit SRP68 1 0 QVPGGGGGGGS(0.068)GGGGGS(0.885)GGGGS(0.047)GGGR 106.35 6.54E-08 0 9918.8 16314 16112 7815.1 13841 15501 19562 14425 10383 16428 TRUE FALSE FALSE 12125.20284 18221.78039 22072.49928 8242.019124 12462.94144 16312.60839 15382.41889 10887.24613 12466.77286 12332.80193 0.983166916 1.477505313 1.789739217 0.668300616 1.010552307 1.322700914 1.247276894 0.882787723 1.010862976 1 13.59021299 -5.261263816 24.99999996 1.037115097 1.422873944 0.346251781 0.248848897 19.18371286 2731552.635 0.07181356 0.114969668 5.48E-06 5.261263816 0.385758847 QVPGGRET(ph)PQGELRPEVVEDEVPRS(ph)PVAEEPGGGGSSSSEAK ddPTM_HeLa_A486_30min_R1 1 QVPGGRETPQGELRPEVVEDEVPRSPVAEEPGGGGSSSSEAK 42 3 Q7L8J4 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 2 0 QVPGGRET(1)PQGELRPEVVEDEVPRS(0.991)PVAEEPGGGGS(0.004)S(0.004)S(0.001)SEAK 83.945 9.58E-05 37020000 7111.6 8673.5 6279.1 1092 8496.9 9678.6 9914.6 7138.2 7072.9 11889 TRUE FALSE FALSE 6613.113564 7986.180272 8710.53568 2542.231187 7431.139572 8484.552737 7433.862214 5512.987686 7685.984667 8911.917016 0.742052866 0.896123725 0.977403141 0.28526199 0.833842995 0.952045752 0.8341485 0.618608508 0.862438985 1 13.12152008 -5.933234998 25 0.835620632 0.730948831 0.087735045 0.193694023 183.6097937 68749.67939 0.062498937 0.070867129 1.17E-06 5.933234998 -0.1046718 QVQS(ph)LTCEVDALK ddPTM_HeLa_A486_30min_R1 4 QVQSLTCEVDALK 13 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQS(0.998)LT(0.002)CEVDALK;QVQS(0.999)LT(0.001)CEVDALK;QVQS(0.975)LT(0.025)CEVDALK;QVQS(0.997)LT(0.003)CEVDALK ;;; 161.82 9.08E-12 320759000 358090 445886 260157 172558 397974 470192 465986 462662 319334 484840 TRUE FALSE FALSE 332989.7402 410552.3695 360896.7576 401723.7446 348056.39 412184.4916 349391.3741 357323.9624 347014.1282 363432.9082 0.916234421 1.129651059 0.993021682 1.105358749 0.957690903 1.134141907 0.961364164 0.983190994 0.954823078 1 18.47132953 QVQS(ph)LTCEVDALKGTNESLER ddPTM_HeLa_A485_30min_R1 4 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQS(0.974)LT(0.026)CEVDALKGTNESLER;QVQS(0.996)LT(0.004)CEVDALKGTNESLER;QVQS(0.994)LT(0.006)CEVDALKGTNESLER;QVQS(0.5)LT(0.5)CEVDALKGTNESLER ;;; 221.9 6.70E-36 982640000 449272 480030 427855 447627 604280 586960 773280 866200 424631 652060 TRUE FALSE FALSE 549211.0064 536165.3328 586136.369 472079.7296 544115.7614 617692.318 608062.4109 653763.0919 509850.5468 489513.4423 1.12195286 1.095302573 1.197385645 0.96438563 1.111544065 1.261849552 1.242177146 1.335536546 1.041545549 1 18.90098895 -6.121796091 7.033089232 1.200893475 1.094495796 0.095352285 0.108446271 0.446567552 23.87162347 0.0347872 0.034853017 7.55E-07 6.121796091 -0.10639768 QVQS(ph)LTCEVDALKGTNESLER ddPTM_HeLa_A486_30min_R1 3 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQS(0.876)LT(0.124)CEVDALKGTNESLER;QVQS(0.983)LT(0.017)CEVDALKGTNESLER;QVQS(0.996)LT(0.004)CEVDALKGTNESLER ;; 146.03 9.21E-10 715990000 263762 300379 208031 138860 328167 283895 387993 407080 211998 353464 TRUE FALSE FALSE 245273.6459 276575.8741 288586.1745 323273.0976 287005.2348 248870.9213 290913.0476 314396.7705 230374.1573 264954.3137 0.925720523 1.043862507 1.08919221 1.220108829 1.083225371 0.939297488 1.097974377 1.18660748 0.869486343 1 18.01538409 -7.773596774 24.99969939 0.934743184 1.074387579 0.266431034 0.091913862 354.7788476 729521.7094 0.088933846 0.023658339 1.68E-08 7.773596774 0.139644396 QVQSLTCEVDALKGTNES(ph)LER ddPTM_HeLa_A485_30min_R1 1 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQSLTCEVDALKGTNES(1)LER 198.93 1.03E-26 253650000 125880 126750 114500 161010 169910 161420 235420 206280 108580 215470 TRUE FALSE FALSE 153881.5717 141572.3099 156858.3147 169805.5686 152993.1638 169871.7016 185120.5938 155689.5066 130371.01 161757.2944 0.951311483 0.875214379 0.969714011 1.049755247 0.945819256 1.050164088 1.144434286 0.96248832 0.805966807 1 17.30347125 -4.959492556 6.98623521 0.999938957 0.914598576 0.123284002 0.084111065 0.399972105 52.21518854 0.023177631 0.048399544 1.10E-05 4.959492556 -0.085340381 QVQSLTCEVDALKGTNES(ph)LER ddPTM_HeLa_A486_30min_R1 4 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQSLTCEVDALKGTNES(1)LER;QVQSLTCEVDALKGTNES(1)LER;QVQSLTCEVDALKGT(0.001)NES(0.999)LER;QVQSLTCEVDALKGTNES(1)LER ;;; 249.96 2.31E-47 785790000 493442 441641 328996 232452 514760 487077 638397 600208 385457 726753 TRUE FALSE FALSE 458854.2639 406643.7587 456392.062 541160.0035 450194.0009 426986.392 478663.3183 463553.7408 418868.7231 544769.3184 0.842290945 0.746451287 0.83777123 0.993374599 0.826393825 0.783793025 0.878653225 0.85091749 0.768891912 1 19.05528593 -11.20357351 2.473438714 1.51547287 0.838322567 0.362703061 0.064976222 14626504.74 1326820.257 42819742.14 0.016985982 6.26E-12 11.20357351 -0.677150303 QVQSLTCEVDALKGTNESLER ddPTM_HeLa_A485_30min_R1 1 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 229.97 5.86E-36 161770000 61437 62723 53843 63099 94206 72794 106010 112790 55519 82946 FALSE FALSE TRUE 75103.44869 70057.90923 73761.76629 66545.93859 84826.51986 76605.38128 83360.09748 85128.07565 66661.15405 62269.08871 1.206111254 1.125083259 1.184564731 1.068683354 1.362257287 1.230231289 1.338707523 1.367100072 1.070533638 1 15.92622855 -5.750675676 24.99960104 1.252126426 1.147355436 0.082358176 0.118907222 405.9087079 942752.875 0.033580885 0.042908306 1.78E-06 5.750675676 -0.104770991 QVQSLTCEVDALKGTNESLER ddPTM_HeLa_A486_30min_R1 1 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 119.83 2.87E-05 92446000 61811 48487 32057 29928 60203 50473 61921 66955 41461 70583 FALSE FALSE TRUE 57478.36809 44644.71353 44470.32892 69673.89648 52651.77837 44246.15443 46427.71087 51710.80812 45054.87286 52908.55738 1.086371864 0.843808936 0.840512974 1.316873866 0.995146739 0.836275957 0.877508539 0.977361899 0.851561167 1 15.69121346 -6.026071743 23.97995103 0.906356399 1.016190277 0.142172982 0.133592966 985.9108628 906807.202 0.046006756 0.046185448 9.42E-07 6.026071743 0.109833878 QVS(ph)ASELHTSGILGPETLR ddPTM_HeLa_A485_30min_R1 7 QVSASELHTSGILGPETLR 19 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 QVS(0.997)AS(0.003)ELHTSGILGPETLR;QVS(0.998)AS(0.002)ELHTSGILGPETLR;QVS(0.809)AS(0.19)ELHT(0.001)SGILGPETLR;QVS(0.998)AS(0.002)ELHTSGILGPETLR;QVS(0.996)AS(0.004)ELHTSGILGPETLR;QVS(0.997)AS(0.003)ELHTSGILGPETLR;QVS(0.98)AS(0.02)ELHTSGILGPETLR ;;;;;; 357.26 6.12E-116 21134360000 1615920 4312210 5761820 663440 5681660 2158761 2717310 2979150 3937950 1424158 TRUE FALSE FALSE 1975375.829 4816485.448 7893356.987 699682.0473 5115973.981 2271790.388 2136734.52 2248508.791 4728260.444 1069141.62 1.847627846 4.505002291 7.38289188 0.654433458 4.785122835 2.124873211 1.998551436 2.103097241 4.422482816 1 20.02802154 -5.278416139 24.9537205 2.553222142 4.571157387 0.237502169 1.746854784 1174.36502 1726167.239 0.48437616 0.720512848 5.27E-06 5.278416139 2.017935245 QVS(ph)ASELHTSGILGPETLR ddPTM_HeLa_A486_30min_R1 8 QVSASELHTSGILGPETLR 19 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 QVS(1)ASELHTSGILGPETLR;QVS(0.963)AS(0.037)ELHTSGILGPETLR;QVS(0.997)AS(0.003)ELHTSGILGPETLR;QVS(0.999)AS(0.001)ELHTSGILGPETLR;QVS(0.985)AS(0.015)ELHTSGILGPETLR;QVS(0.999)AS(0.001)ELHTSGILGPETLR;QVS(0.998)AS(0.002)ELHTSGILGPETLR;QVS(0.996)AS(0.004)ELHTSGILGPETLR ;;;;;;; 292.75 4.73E-79 37693860000 8264064 10442447 14537850 660663.8 14508550 5396883 6524895 7185018 12240403 1897087 TRUE FALSE FALSE 7684795.789 9614949.469 20167294.86 1538058.714 12688752.37 4731070.447 4892297.258 5549146.249 13301410.99 1422044.067 5.404048979 6.761358308 14.1819057 1.081583018 8.92289674 3.326950659 3.440327463 3.90223227 9.353726297 1 20.43953474 -5.281355709 24.95056089 4.653148531 8.580331401 0.254570506 3.391112868 1151.493218 1442552.496 0.93098073 1.382927549 5.23E-06 5.281355709 3.92718287 QVS(ph)LPVTK ddPTM_HeLa_A486_30min_R1 1 QVSLPVTK 8 0 P98082;P98082-3;P98082-2 P98082 DAB2 Disabled homolog 2 1 0 QVS(1)LPVTK 81.017 0.0059624 0 70288 70397 40304 34488 80602 80679 83622 80732 43813 79600 TRUE FALSE FALSE 65361.17417 64818.48534 55910.78818 80289.80693 70492.14558 70725.64526 62698.89114 62351.08597 47610.74612 59667.64189 1.095420769 1.086325574 0.937037 1.345617229 1.181413298 1.185326636 1.05080223 1.044973188 0.797932424 1 15.86466114 -7.389665316 2.191747588 0.906055423 1.134346998 0.389337446 0.110547786 0.343343307 3.055829382 0.08687969 0.032110402 4.08E-08 7.389665316 0.228291575 QVSS(ph)PSFTNR ddPTM_HeLa_A485_30min_R1 2 QVSSPSFTNR 10 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 QVS(0.024)S(0.927)PS(0.047)FT(0.002)NR;QVS(0.393)S(0.602)PS(0.005)FTNR ; 84.352 0.0048799 644360000 807820 851930 775340 923510 1086600 803820 1113800 1033600 786330 1342430 TRUE FALSE FALSE 987516.7721 951555.8027 1062170.531 973959.0128 978414.2887 845906.7723 875827.5311 780107.9794 944139.2184 1007786.907 0.979886488 0.944203379 1.053963416 0.966433486 0.970854337 0.839370671 0.86906024 0.774080288 0.936844101 1 19.94275919 -6.182291769 5.35953644 0.868995339 0.985356273 0.379324724 0.062093031 0.203817582 10.22006627 0.019886291 0.019829375 6.57E-07 6.182291769 0.116360934 QVTITGSAASISLAQYLINAR ddPTM_HeLa_A485_30min_R1 2 QVTITGSAASISLAQYLINAR 21 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 0 ; ; 280.4 7.85E-64 26420300 11578.8 14479.5 13579.3 9350.3 17097.7 13595.2 18832.6 19736 13448.2 14795 FALSE FALSE TRUE 14154.46411 16172.75157 18602.84815 9861.083213 15395.39295 14307.02365 14808.86116 14895.71506 16147.13039 11106.87878 1.274387197 1.456102285 1.674894317 0.887835674 1.38611335 1.288122787 1.333305373 1.341125202 1.453795499 1 13.43916583 -10.16813941 3.966948753 0.999857417 1.342780707 0.232186955 0.187636856 17820768.08 7613099.827 25460.6739 0.044940084 6.79E-11 10.16813941 0.34292329 QVTITGSAASISLAQYLINAR ddPTM_HeLa_A486_30min_R1 1 QVTITGSAASISLAQYLINAR 21 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 0 0 221.49 7.66E-40 0 6778.5 3004.2 3392.6 1415.5 4184.5 3586.9 4623.6 4041.6 3288.5 4548.3 FALSE FALSE TRUE 6303.362154 2766.136251 4706.305577 3295.355535 3659.640991 3144.384747 3466.726377 3121.415908 3573.549828 3409.376076 1.848831579 0.8113321 1.380400834 0.966556772 1.073404902 0.922275712 1.016821348 0.915538749 1.048153606 1 11.73529203 -4.252425069 24.97901534 1.021201574 1.848832011 0.756867374 0.141748605 553.7678912 1534480.96 0.033628316 0.40008541 5.59E-05 4.252425069 0.827630437 QVVPPFKPNISGEFGLDNFDSQFTNEPVQLT(ph)PDDDDIVR ddPTM_HeLa_A485_30min_R1 1 QVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDDIVR 39 1 P41743 P41743 PRKCI Protein kinase C iota type 1 0 QVVPPFKPNISGEFGLDNFDSQFTNEPVQLT(1)PDDDDIVR 246.33 6.37E-52 145520000 32765 38497 28459 26619 43157 38857 39682 61607 33517 44729 TRUE FALSE FALSE 40053.46121 42998.88927 38987.16838 28073.12857 38860.13755 40891.49244 31203.61653 46497.78665 40243.55446 33578.88348 1.192816945 1.280533622 1.161062083 0.8360352 1.157279025 1.217774035 0.929263075 1.384732958 1.19847804 1 15.03526664 -7.267918292 24.99586809 1.218704093 1.114499074 0.051618644 0.153631312 1470.752509 5674169.433 0.082355349 0.041110529 5.40E-08 7.267918292 -0.104205019 QVVQTPNTVLSTPFRT(ph)PSNGAEGLT(ph)PR ddPTM_HeLa_A485_30min_R1 1 QVVQTPNTVLSTPFRTPSNGAEGLTPR 27 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 2 0 QVVQT(0.003)PNT(0.016)VLS(0.025)T(0.027)PFRT(0.918)PS(0.012)NGAEGLT(0.999)PR 85.239 0.0036779 146990000 43794 71906 75980 49273 96557 69173 82632 94603 56301 64235 TRUE FALSE FALSE 53535.82421 80314.7812 104088.1638 51964.65922 86943.44605 72794.79132 64976.99816 71401.46592 67600.09428 48222.39666 1.110185887 1.665507871 2.158502501 1.077604243 1.802968166 1.509563945 1.347444396 1.480670204 1.401840202 1 15.55741573 -8.650542622 0.461441655 0.955655185 1.582984196 0.218736755 0.299310205 3.853213346 1.371050697 0.657556644 0.173566347 2.24E-09 8.650542622 0.62732901 QVVQTPNTVLSTPFRT(ph)PSNGAEGLT(ph)PR ddPTM_HeLa_A486_30min_R1 2 QVVQTPNTVLSTPFRTPSNGAEGLTPR 27 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 2 0 QVVQT(0.011)PNT(0.038)VLS(0.041)T(0.043)PFRT(0.784)PS(0.112)NGAEGLT(0.97)PR;QVVQT(0.017)PNT(0.082)VLS(0.102)T(0.109)PFRT(0.644)PS(0.048)NGAEGLT(0.998)PR ; 60.181 0.01802 179965000 115167 114890 97162 32807 123869 88859 105694 106382 87772 112267 TRUE FALSE FALSE 107094.388 105785.698 134785.7285 76376.35397 108332.195 77896.48003 79248.24328 82161.1409 95380.14763 84154.61246 1.272590829 1.257039809 1.601643981 0.90757181 1.287299553 0.925635301 0.941698155 0.976311797 1.133391799 1 16.36075473 -5.274002658 24.9945849 1.026944582 1.365086378 0.577779665 0.137976393 535.2872746 1064950.363 0.038566419 0.057646748 5.32E-06 5.274002658 0.338141796 QVVSVVQDEEVGLPFEASPES(ph)PPPASPDGVTEIR ddPTM_HeLa_A485_30min_R1 2 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 QVVSVVQDEEVGLPFEAS(0.027)PES(0.824)PPPAS(0.148)PDGVT(0.001)EIR;QVVSVVQDEEVGLPFEAS(0.038)PES(0.962)PPPASPDGVTEIR ; 157.15 3.00E-10 396130000 101038 163415 177750 137622 182053 150971 182711 175226 148526 182914 TRUE FALSE FALSE 123513.5545 182524.9627 243507.1218 145139.9414 163927.1641 158875.6081 143673.3022 132251.5488 178333.8058 137316.9061 0.899478135 1.329224259 1.773322228 1.056970664 1.193787195 1.15699962 1.046289975 0.963111918 1.298702475 1 17.06714973 QVVSVVQDEEVGLPFEASPES(ph)PPPASPDGVTEIR ddPTM_HeLa_A486_30min_R1 2 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 QVVSVVQDEEVGLPFEAS(0.001)PES(0.998)PPPASPDGVTEIR;QVVSVVQDEEVGLPFEAS(0.007)PES(0.99)PPPAS(0.003)PDGVTEIR ; 177.41 1.54E-15 297130000 83901 105833 100409 31993 132525 90391 94931 97623 97734 104733 TRUE FALSE FALSE 78019.97317 97446.40764 139290.0538 74481.32084 115902.4788 79239.47745 71178.25972 75396.374 106205.6618 78507.1751 0.993794173 1.241242059 1.774233421 0.948719919 1.476329757 1.00932784 0.906646553 0.960375582 1.352814716 1 16.26053689 -6.286992536 24.31277019 1.034657216 1.292619644 0.193807387 0.245127721 889.4477985 846269.1441 0.08569241 0.075606575 5.16E-07 6.286992536 0.257962428 QVVSVVQDEEVGLPFEASPESPPPAS(ph)PDGVTEIR ddPTM_HeLa_A485_30min_R1 1 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 QVVSVVQDEEVGLPFEASPES(0.001)PPPAS(0.994)PDGVT(0.004)EIR 106.47 7.64E-05 121180000 31543 45738 43890 33484 47928 40233 45486 32809 31822 46726 TRUE FALSE FALSE 38559.63153 51086.66123 60126.73742 35313.14613 43156.12003 42339.53767 35767.54451 24762.54131 38208.38351 35078.06813 1.099251857 1.456370432 1.714083489 1.006701566 1.230287822 1.207008821 1.019655483 0.705926598 1.089238534 1 15.09828168 -6.28259633 0.937842426 0.918805706 1.381498191 0.402969777 0.202252687 0.540985445 1.013383917 0.125619811 0.11288067 5.22E-07 6.28259633 0.462692485 QVVSVVQDEEVGLPFEASPESPPPAS(ph)PDGVTEIR ddPTM_HeLa_A486_30min_R1 1 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 QVVSVVQDEEVGLPFEASPESPPPAS(0.995)PDGVT(0.004)EIR 164.28 2.14E-14 268340000 106730 99356 95771 35784 122950 92973 99837 95631 93162 102220 TRUE FALSE FALSE 99248.77815 91482.66871 132856.096 83306.96042 107528.4645 81502.93654 74856.72663 73857.90891 101237.3572 76623.44666 1.29527948 1.193925263 1.733883058 1.087225439 1.403336305 1.06368142 0.976942827 0.963907422 1.321232098 1 16.2254983 -6.27055544 23.08223523 1.057383787 1.341999022 0.365048805 0.182896303 256.008626 648220.9505 0.062508381 0.056011207 5.36E-07 6.27055544 0.284615235 QWADDWLVHLISPNVYR ddPTM_HeLa_A485_30min_R1 1 QWADDWLVHLISPNVYR 17 0 A6NHH0;X6RJ95;Q9H7Z7 A6NHH0 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 0 106.67 0.00021116 7689200 4324.8 6466.8 5346.8 4987.2 6651.5 5328.7 5773.7 6458.3 5776.8 7832.5 FALSE FALSE TRUE 5286.83684 7223.036006 7324.803819 5259.638108 5989.253305 5607.702492 4540.101828 4874.391799 6936.150772 5880.001896 0.899121622 1.228407088 1.245714533 0.894495988 1.018580166 0.953690592 0.772125912 0.82897793 1.179617098 1 12.52160091 -5.274034441 24.56766583 0.938159896 1.134813686 0.251859979 0.13668885 741.0157741 1445408.481 0.03889798 0.058160209 5.32E-06 5.274034441 0.19665379 QWADDWLVHLISPNVYR ddPTM_HeLa_A486_30min_R1 2 QWADDWLVHLISPNVYR 17 0 A6NHH0;X6RJ95;Q9H7Z7 A6NHH0 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form 0 0 ; ; 134.21 1.60E-06 13250300 8655.5 9530 8946.1 4044.7 13658.3 8591 11011.5 10150 8530.5 8879 FALSE FALSE TRUE 8048.794147 8774.808092 12410.2695 9416.266008 11945.14866 7531.129767 8256.306232 7839.066573 9269.930608 6655.640607 1.209319226 1.31840173 1.864624345 1.414779818 1.794740636 1.131540931 1.240497605 1.177807973 1.392793144 1 12.70036182 -6.287154749 24.98697355 1.202889008 1.522411321 0.391163177 0.206607293 858.9157577 834583.5838 0.073260456 0.06463029 5.16E-07 6.287154749 0.319522313 QWLIDTLYAFNSGNVER ddPTM_HeLa_A485_30min_R1 2 QWLIDTLYAFNSGNVER 17 0 E9PL38;A0A087WUL9;Q9UNM6;Q9UNM6-2;H0YD73;J3KNQ3 E9PL38 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 ; ; 196.58 6.35E-18 12312800 7770.7 8025.8 11236.3 7840.3 10528.2 6950.1 9066.2 7472.3 8792.2 13337.1 FALSE FALSE TRUE 9499.265406 8964.347495 15393.07495 8268.595736 9479.975441 7313.996489 7129.132306 5639.706709 10556.71389 10012.40642 0.948749482 0.895323973 1.537400132 0.825835008 0.946822876 0.730493368 0.712029856 0.563271852 1.054363302 1 13.28950114 -5.473306468 24.99878692 0.809062955 1.116915135 0.284497805 0.21113949 456.3324311 230123.2236 0.05931416 0.087975362 3.36E-06 5.473306468 0.30785218 QWLIDTLYAFNSGNVER ddPTM_HeLa_A486_30min_R1 1 QWLIDTLYAFNSGNVER 17 0 E9PL38;A0A087WUL9;Q9UNM6;Q9UNM6-2;H0YD73;J3KNQ3 E9PL38 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 117.92 0.00013088 9103700 2937.1 3021.8 3031.3 893.5 3707.6 2936.5 3930.6 3358.2 2823.9 2949.5 FALSE FALSE TRUE 2731.224457 2782.341563 4205.100541 2080.113155 3242.558236 2574.224486 2947.122306 2593.611169 3068.677926 2210.926002 1.23533056 1.258450785 1.901963493 0.940833458 1.466606405 1.164319604 1.332980979 1.173088184 1.387960485 1 11.11043502 -13.5569048 0.154359193 3.89E-11 1.415508925 0.142853665 0.237207462 221.6163273 2.268994643 68.77069002 1.095312762 2.77E-14 13.5569048 1.415508925 QWVES(ph)SPKPMVSLLGSGRPTGSPLSAEFSGTR ddPTM_HeLa_A486_30min_R1 2 QWVESSPKPMVSLLGSGRPTGSPLSAEFSGTR 32 2 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 QWVES(0.5)S(0.5)PKPMVSLLGSGRPTGSPLSAEFSGTR;QWVES(0.509)S(0.452)PKPMVS(0.015)LLGS(0.016)GRPT(0.004)GS(0.004)PLSAEFSGTR ; 69.523 0.00072508 513750000 45363 49668 32405 23435 49722 56181 58757 58510 33993 64936 TRUE FALSE FALSE 42183.28795 45732.12679 44953.08384 54557.86434 43485.40312 49249.95943 44055.37713 45188.55026 36939.54061 48675.60294 0.866620759 0.939528717 0.923523924 1.120846195 0.893371638 1.011799679 0.905081282 0.928361387 0.758892307 1 15.57091123 -7.538175971 24.82437672 0.867506362 0.953743922 0.093918571 0.086812354 440.0823872 714151.1434 0.056003563 0.021182481 2.90E-08 7.538175971 0.08623756 QWVESS(ph)PKPMVSLLGSGRPT(ph)GSPLSAEFSGTR ddPTM_HeLa_A485_30min_R1 1 QWVESSPKPMVSLLGSGRPTGSPLSAEFSGTR 32 2 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 2 0 QWVES(0.471)S(0.529)PKPMVS(0.002)LLGS(0.001)GRPT(0.551)GS(0.437)PLS(0.008)AEFSGTR 88.636 0.0013369 220500000 140300 141210 98615 198790 196140 139200 207300 210010 126090 272030 TRUE FALSE FALSE 171509.251 157723.2811 135096.7922 209649.3943 176611.6129 146488.2968 163008.6615 158504.7182 151395.1064 204217.9273 0.839834451 0.772328283 0.661532481 1.026596426 0.864819339 0.717313601 0.798209362 0.776154769 0.741340921 1 17.63974999 -6.382253622 0.013806425 1.625291647 5.80E-06 0.091175375 0.106156455 4333.929838 25.9336087 1474.308461 1575.600551 4.15E-07 6.382253622 -1.62528585 QWVESS(ph)PKPMVSLLGSGRPT(ph)GSPLSAEFSGTR ddPTM_HeLa_A486_30min_R1 1 QWVESSPKPMVSLLGSGRPTGSPLSAEFSGTR 32 2 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 2 0 QWVES(0.467)S(0.533)PKPMVS(0.001)LLGS(0.003)GRPT(0.562)GS(0.432)PLS(0.003)AEFSGTR 130.24 1.25E-05 217620000 310630 301380 176870 215170 292590 338530 460310 426580 233200 470000 TRUE FALSE FALSE 288856.4411 277497.5512 245358.8007 500926.6341 255890.6339 296765.6105 345135.5693 329457.0462 253413.9638 352308.9408 0.81989529 0.787654013 0.696430809 1.421839119 0.726324553 0.842344818 0.979638974 0.935136773 0.719294728 1 18.42648156 QWVESSPKPMVSLLGSGRPT(ph)GSPLSAEFSGTR ddPTM_HeLa_A485_30min_R1 1 QWVESSPKPMVSLLGSGRPTGSPLSAEFSGTR 32 2 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 QWVESSPKPMVSLLGS(0.001)GRPT(0.578)GS(0.353)PLS(0.067)AEFS(0.001)GTR 113.22 6.74E-05 1080000000 227240 241210 218060 224300 322690 253210 284190 349570 231040 295120 TRUE FALSE FALSE 277788.754 269417.4113 298729.4682 236552.941 290561.8506 266467.6841 223470.4849 263837.4094 277407.6088 221552.0153 1.253830861 1.216045861 1.348349135 1.06770837 1.311483672 1.202731935 1.008659229 1.190859894 1.252110519 1 17.75728592 -6.53704253 24.97571679 1.125509977 1.236928645 0.266623604 0.098506556 360.5889293 635839.0716 0.036641524 0.028395795 2.90E-07 6.53704253 0.111418669 QWYESHYALPLGR ddPTM_HeLa_A485_30min_R1 2 QWYESHYALPLGR 13 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 ; ; 114.56 0.00077173 809140000 308430 423040 404790 304160 472490 401080 499950 517040 351910 432820 FALSE FALSE TRUE 377039.1894 472510.848 554538.6657 320775.4906 425447.2366 422079.9286 393131.5983 390235.1293 422535.1091 324925.9395 1.16038501 1.454210916 1.706661729 0.987226477 1.309366797 1.299003488 1.2099114 1.200997156 1.300404362 1 18.3097514 -14 0.090650364 0.011335302 1.542736784 0.218212127 0.176982232 320.2680512 2.010900575 60.66028668 4.16704167 1.00E-14 14 1.531401481 QWYESHYALPLGR ddPTM_HeLa_A486_30min_R1 2 QWYESHYALPLGR 13 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 0 0 ; ; 132.06 6.19E-05 600140000 510140 544020 501630 190781 686090 519010 601000 619360 537780 570790 FALSE FALSE TRUE 474381.8204 500909.8739 695874.5701 444147.8095 600034.1947 454979.8231 450623.4433 478345.2485 584395.2034 427860.4688 1.108730194 1.17073184 1.626405384 1.038066945 1.402406248 1.063383641 1.053201864 1.11799356 1.365854633 1 18.70678086 -6.280331562 24.41573434 1.123281032 1.270790349 0.149250065 0.177985144 1263.180764 1632494.732 0.061910765 0.054703785 5.24E-07 6.280331562 0.147509317 QY(ph)MHFRNVSK ddPTM_HeLa_A485_30min_R1 1 QYMHFRNVSK 10 1 P29973;P29973-2 P29973 CNGA1 cGMP-gated cation channel alpha-1 1 0 QY(0.998)MHFRNVS(0.002)K 44.349 0.022648 290490000 247250 178580 278020 458750 447390 208630 362640 249120 301120 557290 TRUE FALSE FALSE 302249.9095 199463.3776 380871.1674 483810.3509 402846.2807 219553.5442 285159.0015 188022.9294 361552.022 418367.8592 0.722450119 0.476765538 0.910373871 1.156423325 0.962899687 0.524785878 0.68159873 0.44942011 0.864196458 1 18.6744125 -6.25618622 24.93209268 0.668188899 0.846127792 0.083234661 0.219748225 972.9735344 4617849.472 0.078150335 0.075931972 5.54E-07 6.25618622 0.177938893 QY(ph)T(ph)FKMNEDT(ph)QEEPGKSEEEK ddPTM_HeLa_A485_30min_R1 1 QYTFKMNEDTQEEPGKSEEEK 21 2 A0A087WZU3;A0A5F9ZI30;A0A5F9ZHS1;A0A5F9ZGX3;A0A5F9ZHE4;D6RHE1;A0A5F9ZHR8;A0A5F9ZHD2;A0A5F9ZGY3;I6L894;A0A5F9ZI40;A0A5F9ZHN5;A0A5F9ZH19;A0A5F9ZHT8;A0A5F9ZI46;A0A5F9ZI65;A0A5F9ZGZ5;A0A5F9ZHT4;A0A5F9ZHF7;A0A5F9ZGY4;A0A5F9ZH30;Q01484 A0A087WZU3 ANK2 Ankyrin-2 3 0 QY(0.975)T(0.962)FKMNEDT(0.671)QEEPGKS(0.391)EEEK 43.494 0.021993 1096000000 508400 246720 123880 1092500 250600 396620 439370 332430 148090 630000 TRUE FALSE FALSE 621491.826 275571.7578 169708.3671 1152180.509 225649.3841 417386.4099 345495.0102 250901.0213 177810.3046 472952.5943 1.314067908 0.582662536 0.358827437 2.436143754 0.477107826 0.882512148 0.730506639 0.530499302 0.375957986 1 18.85133606 QY(ph)T(ph)FKMNEDTQEEPGKS(ph)EEEK ddPTM_HeLa_A486_30min_R1 1 QYTFKMNEDTQEEPGKSEEEK 21 2 A0A087WZU3;A0A5F9ZI30;A0A5F9ZHS1;A0A5F9ZGX3;A0A5F9ZHE4;D6RHE1;A0A5F9ZHR8;A0A5F9ZHD2;A0A5F9ZGY3;I6L894;A0A5F9ZI40;A0A5F9ZHN5;A0A5F9ZH19;A0A5F9ZHT8;A0A5F9ZI46;A0A5F9ZI65;A0A5F9ZGZ5;A0A5F9ZHT4;A0A5F9ZHF7;A0A5F9ZGY4;A0A5F9ZH30;Q01484 A0A087WZU3 ANK2 Ankyrin-2 3 0 QY(0.966)T(0.966)FKMNEDT(0.296)QEEPGKS(0.772)EEEK 50.857 0.017172 1757900000 60238 55900 24593 196020 39618 109320 87598 89389 27230 341570 TRUE FALSE FALSE 56015.62727 51470.28042 34116.06822 456344.4663 34648.74102 95833.20988 65680.05388 69037.07605 29590.31832 256038.6488 0.218778015 0.201025434 0.133245775 1.782326491 0.135326214 0.374291969 0.256523983 0.269635371 0.115569733 1 17.96600207 -11.25671322 2.219888941 3.227455618 0.40036895 0.130323835 0.473676634 29131177.23 4554937.373 325694268.6 0.125414128 5.54E-12 11.25671322 -2.827086668 QYAEK(ac)K ddPTM_HeLa_A486_30min_R1 1 QYAEKK 6 1 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQ49;E9PI39;E9PL71;E9PQZ1;P29692-4;H0YE72;H0YE58 P29692-2 EEF1D Elongation factor 1-delta 0 1 QYAEK(1)K 55.531 0.022776 0 14324 27802 20817 9214.9 30042 31625 32264 32299 25166 22110 FALSE TRUE FALSE 13319.96157 25598.86827 28877.8999 21452.7529 26273.85223 27723.42904 24191.20595 24945.22278 27347.40914 16573.51209 0.803689737 1.544565095 1.742412818 1.294399931 1.585291765 1.672755231 1.459630633 1.505125929 1.650067228 1 14.01659174 -4.2602086 24.76958801 1.51944883 0.803689478 0.503019755 0.204817124 69.37809154 1396057.711 0.046811233 0.281695688 5.49E-05 4.2602086 -0.715759352 QYAENYTRPS(ph)SR ddPTM_HeLa_A486_30min_R1 1 QYAENYTRPSSR 12 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 QYAENYT(0.001)RPS(0.544)S(0.456)R 68.944 0.0062735 1787300000 1568400 1568700 1090600 556740 1631200 1631300 1752600 1827700 1239800 1863300 TRUE FALSE FALSE 1458463.259 1444390.499 1512909.527 1296118.856 1426599.686 1430046.792 1314080.943 1411572.608 1347266.862 1396717.552 1.044207726 1.034132131 1.083189314 0.927974918 1.021394543 1.023862548 0.940835132 1.010635691 0.964595068 1 20.41360887 -5.246471016 24.99930638 0.986025898 1.051871964 0.486702185 0.032724754 723.0524027 1207599.474 0.008641617 0.014893118 5.67E-06 5.246471016 0.065846065 QYAENYTRPSS(ph)R ddPTM_HeLa_A485_30min_R1 2 QYAENYTRPSSR 12 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 QYAENYTRPS(0.182)S(0.818)R;QYAENYTRPS(0.117)S(0.883)R ; 121.42 0.0012473 1113480000 627820 728790 750760 733160 880850 654420 816670 739860 721280 911510 TRUE FALSE FALSE 767476.393 814015.6509 1028497.366 773210.6743 793149.4811 688684.4193 642181.7829 558408.1749 866034.28 684287.3321 1.121570365 1.189581646 1.503019737 1.129950297 1.159088359 1.006425791 0.938468028 0.81604342 1.26560034 1 19.38424271 -5.996717506 1.866006632 0.988031052 1.258161871 0.370411639 0.143379025 0.350234217 2.462924 0.053961705 0.05952552 1.01E-06 5.996717506 0.270130819 QYAENYTRPSS(ph)R ddPTM_HeLa_A486_30min_R1 3 QYAENYTRPSSR 12 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 QYAENYTRPS(0.163)S(0.836)R;QYAENYT(0.003)RPS(0.186)S(0.811)R;QYAENYTRPS(0.044)S(0.956)R ;; 97.797 0.00064231 2511620000 2257590 2506280 1786630 828937 2297890 2500010 2647880 2450060 1920420 2551210 TRUE FALSE FALSE 2099344.599 2307673.245 2478460.984 1929807.228 2009667.209 2191584.184 1985352.418 1892234.822 2086883.552 1912370.41 1.097770907 1.206708299 1.296015129 1.009117908 1.050877591 1.146004023 1.038163113 0.989470875 1.091254885 1 20.86693056 -5.274557318 24.97549603 1.049965863 1.200819134 0.562071623 0.062136095 558.870569 1064043.289 0.01788853 0.02671001 5.31E-06 5.274557318 0.150853271 QYPDS(ph)PHPVPHR ddPTM_HeLa_A485_30min_R1 2 QYPDSPHPVPHR 12 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 QYPDS(1)PHPVPHR;QY(0.001)PDS(0.999)PHPVPHR ; 58.09 0.02325 280970000 124430 217090 211890 114415 225810 177668 171685 205010 154131 137733 TRUE FALSE FALSE 152109.0242 242476.7871 290276.9285 120665.2017 203327.5635 186970.4218 135003.0972 154730.9761 185063.6779 103398.6979 1.471092261 2.345066157 2.807355744 1.166989568 1.966442206 1.808247353 1.30565568 1.496449948 1.789806658 1 16.65785849 -7.084019844 0.26152742 0.951010093 2.280566745 0.283831475 0.444116426 2.603750899 0.64500419 1.024370788 1.313425928 8.24E-08 7.084019844 1.329556652 QYPDS(ph)PHPVPHR ddPTM_HeLa_A486_30min_R1 2 QYPDSPHPVPHR 12 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 QYPDS(1)PHPVPHR;QYPDS(1)PHPVPHR ; 108.89 0.00038269 0 585220 723650 571770 233940 868610 573600 738750 703710 522710 646710 TRUE FALSE FALSE 544199.1001 666305.3385 793174.6565 544624.1427 759660.8343 502835.0639 553906.9363 543490.5949 568018.9237 484769.6066 1.122593275 1.37447837 1.636188915 1.123470067 1.567055409 1.037266068 1.142618945 1.121131745 1.171729654 1 18.88693972 -6.280914602 24.79498717 1.105124358 1.366971985 0.417997232 0.159165287 761.2727912 969215.4775 0.054340715 0.047991924 5.24E-07 6.280914602 0.261847627 QYS(ph)SLPR ddPTM_HeLa_A486_30min_R1 1 QYSSLPR 7 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 QYS(0.819)S(0.181)LPR 79.474 0.010346 0 544380 568660 494700 174480 678890 555550 622600 621180 513050 624760 TRUE FALSE FALSE 506221.7732 523597.3106 686261.0885 406198.2577 593737.2858 487011.8894 466818.8948 479750.8743 557521.5871 468316.0295 1.080940522 1.118042684 1.46538031 0.867359288 1.267813289 1.039921461 0.996803153 1.024416941 1.190481538 1 18.83712289 -5.276143631 24.99989292 1.062055928 1.211113361 0.225501708 0.140360376 1269.944492 2159133.812 0.03868685 0.057657354 5.29E-06 5.276143631 0.149057433 QYSS(ph)LPR ddPTM_HeLa_A485_30min_R1 3 QYSSLPR 7 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 QYS(0.077)S(0.923)LPR;QYS(0.062)S(0.938)LPR;QYS(0.049)S(0.951)LPR ;; 86.136 0.0076977 1076590000 1435770 1986000 1865110 1451880 2253880 1954080 2322990 2509020 1699870 1950160 TRUE FALSE FALSE 1755152.083 2218245.424 2555091.803 1531192.528 2029475.793 2056392.607 1826664.209 1893678.911 2041018.317 1464021.002 1.198857175 1.515173226 1.745256249 1.045881532 1.386234071 1.404619609 1.247703555 1.293477968 1.394118195 1 20.48150482 -13.02267372 0.181667394 2.57E-09 1.443390029 0.269770253 0.178027519 122.714411 1.633241613 45.52729576 0.569090491 9.49E-14 13.02267372 1.443390026 QYSS(ph)LPR ddPTM_HeLa_A486_30min_R1 3 QYSSLPR 7 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 QYS(0.207)S(0.793)LPR;QYS(0.041)S(0.959)LPR;QYS(0.083)S(0.917)LPR ;; 85.731 0.0078987 1068460000 1763150 1844240 1664700 606640 2281280 1786260 1969670 2002600 1715110 2000170 TRUE FALSE FALSE 1639562.29 1698095.706 2309316.422 1412288.578 1995140.59 1565889.403 1476837.733 1546651.696 1863777.116 1499314.413 1.093541338 1.132581459 1.540248264 0.941956247 1.330701935 1.044403621 0.985008695 1.031572619 1.24308624 1 20.51587152 -6.294833643 24.43734576 1.05804964 1.207326341 0.172548938 0.160886357 890.9290316 651963.4577 0.055438519 0.048895293 5.07E-07 6.294833643 0.1492767 QYTS(ph)PEEIDAQLQAEK ddPTM_HeLa_A485_30min_R1 3 QYTSPEEIDAQLQAEK 16 0 Q13442;F8WBW6 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 QYT(0.029)S(0.971)PEEIDAQLQAEK;QYT(0.007)S(0.993)PEEIDAQLQAEK;QYT(0.081)S(0.919)PEEIDAQLQAEK ;; 271.2 2.17E-58 273398000 299550 310883.1 251580.8 385501.4 415944 328800.3 415162.6 457784 286705.6 502927.2 TRUE FALSE FALSE 366183.8641 347238.1742 344651.0071 406560.3653 374531.1549 346015.7753 326459.7189 345511.7562 344244.7841 377556.7047 0.969877794 0.919698074 0.912845681 1.07681935 0.991986502 0.916460418 0.864664075 0.915125468 0.911769755 1 18.52633381 -6.279470019 18.4566854 0.912740251 0.973502464 0.191664592 0.052487512 44.47957554 45528.14548 0.019330416 0.017144571 5.25E-07 6.279470019 0.060762213 QYTS(ph)PEEIDAQLQAEK ddPTM_HeLa_A486_30min_R1 4 QYTSPEEIDAQLQAEK 16 0 Q13442;F8WBW6 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 QYT(0.053)S(0.947)PEEIDAQLQAEK;QYT(0.293)S(0.707)PEEIDAQLQAEK;QYT(0.005)S(0.995)PEEIDAQLQAEK;QYT(0.04)S(0.96)PEEIDAQLQAEK ;;; 280.19 1.10E-58 474745000 1044060 1061030 658190 418296 1062740 1039250 1262240 1237690 816640 1271430 TRUE FALSE FALSE 970876.7855 976950.1186 913058.7949 973814.2275 929441.2395 911037.9013 946414.2014 955895.0056 887427.0127 953055.6524 1.018698943 1.025071428 0.958033031 1.021781073 0.97522242 0.955912594 0.993031413 1.00297921 0.931138712 1 19.86220094 -4.273580863 0.800682715 0.97830229 1.052741743 0.228456806 0.026606672 3.688733032 1.847430565 0.009947072 0.245201654 5.33E-05 4.273580863 0.074439453 RAADEDWDS(ph)ELEDDLLGEDLLSGK ddPTM_HeLa_A485_30min_R1 2 RAADEDWDSELEDDLLGEDLLSGK 24 1 Q96EV2;A8MTF7;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 0 RAADEDWDS(1)ELEDDLLGEDLLSGK;RAADEDWDS(1)ELEDDLLGEDLLSGK ; 170.32 1.87E-14 74642000 19986 21763.7 22376.7 28430 34318 24505 34208 33801 24812.8 37390 TRUE FALSE FALSE 24431.81675 24308.7754 30654.7725 29983.05891 30901.17942 25788.04391 26899.18135 25511.25175 29792.50136 28069.36111 0.870408723 0.866025247 1.092107953 1.068177462 1.100886454 0.918725717 0.958311136 0.90886471 1.061388652 1 14.77670861 -4.739238935 24.96044037 1.010012557 0.868216801 0.443011331 0.06509029 237.3511028 266854.782 0.018133776 0.04789583 1.82E-05 4.739238935 -0.141795756 RAADEDWDS(ph)ELEDDLLGEDLLSGK ddPTM_HeLa_A486_30min_R1 2 RAADEDWDSELEDDLLGEDLLSGK 24 1 Q96EV2;A8MTF7;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 0 RAADEDWDS(1)ELEDDLLGEDLLSGK;RAADEDWDS(1)ELEDDLLGEDLLSGK ; 209.07 4.28E-29 39978700 45180.3 54175.2 37492.8 25494.9 53914.9 49188.2 61445.2 58127.5 40017 57945.7 TRUE FALSE FALSE 42013.39428 49882.15985 52011.01625 59353.41564 47152.39051 43119.85999 46070.96106 44893.13716 43485.70578 43435.71956 0.967254479 1.148413342 1.197424995 1.366465578 1.085567155 0.992728115 1.060669917 1.033553435 1.001150809 1 15.40659432 -5.992996599 24.98656466 1.024268063 1.177284144 0.376299175 0.092016672 193.9961198 692127.7053 0.029990135 0.033933058 1.02E-06 5.992996599 0.153016082 RAAEDDEDDDVDTK(ac)K ddPTM_HeLa_A486_30min_R1 1 RAAEDDEDDDVDTKK 15 2 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 1 RAAEDDEDDDVDTK(1)K 108.49 0.0046123 15524000 14418 16900 10880 7997.1 16065 15427 17696 18834 10051 21511 FALSE TRUE FALSE 13407.37265 15560.78245 15093.02738 18617.65295 14049.9779 13523.77359 13268.27363 14545.90934 10922.22877 16124.50559 0.831490465 0.965039354 0.936030398 1.154618531 0.871343175 0.838709349 0.822863905 0.902099557 0.67736829 1 13.9769673 -5.978079431 24.94599627 0.842118787 0.974285502 0.238656224 0.105123089 312.4122225 355528.8574 0.031730385 0.035976219 1.05E-06 5.978079431 0.132166715 RAAEDDEDDDVDTKK ddPTM_HeLa_A486_30min_R1 1 RAAEDDEDDDVDTKK 15 2 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 111.92 0.00016971 253140000 138270 135800 90573 88596 155280 181390 208520 190970 108380 252800 FALSE FALSE TRUE 128577.987 125038.7134 125645.2912 206255.9654 135803.3345 159011.946 156346.0905 147490.2998 117774.4657 189497.2345 0.678521707 0.659844529 0.663045514 1.088437865 0.716650746 0.839125417 0.825057373 0.778324286 0.621510208 1 17.53181727 -13.99985717 0.025019764 2.002443831 3.17E-07 0.167731197 0.134112838 4510.140124 8.501808914 493.8548823 232.0265999 1.00E-14 13.99985717 -2.002443514 RAAMSVT(ph)LT(ph)S(ph)VK ddPTM_HeLa_A486_30min_R1 2 RAAMSVTLTSVK 12 1 O94875-11;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9JG84;C9J9D3 O94875-11 SORBS2 Sorbin and SH3 domain-containing protein 2 3 0 RAAMSVT(1)LT(1)S(1)VK;RAAMSVT(1)LT(1)S(1)VK ; 92.247 0.00064263 463090000 303700 663480 350550 548250 784670 839220 1312280 1235020 459280 848730 TRUE FALSE FALSE 282412.1983 610903.4284 486292.3481 1276353.707 686249.3718 735685.569 983933.6641 953832.9063 499090.7602 636202.4837 0.443903011 0.960234271 0.764367258 2.006206734 1.078665031 1.156370162 1.546573126 1.499259954 0.784484143 1 19.27912648 -5.055834843 24.99653957 1.317927924 0.74212352 0.370642207 0.341230641 287.0258601 128497.2854 0.089631357 0.155246921 8.79E-06 5.055834843 -0.575804404 RAAPLAFPPLGLTPSPTASSLLGESPSLPS(ph)PPSR ddPTM_HeLa_A485_30min_R1 2 RAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSR 34 1 Q92570-2;Q92570;Q92570-3 Q92570-2 NR4A3 Nuclear receptor subfamily 4 group A member 3 1 0 RAAPLAFPPLGLTPSPTASSLLGESPS(0.005)LPS(0.981)PPS(0.014)R;RAAPLAFPPLGLTPSPTASSLLGESPS(0.004)LPS(0.994)PPS(0.002)R ; 146.98 1.13E-09 131709000 22500 39364 33409 29882 50672 40086 44540 74606 33911 34891 TRUE FALSE FALSE 27505.04738 43967.27738 45768.37936 31514.37799 45626.91776 42184.84098 35023.66514 56308.76152 40716.62665 26193.31582 1.050078866 1.678568597 1.74733049 1.203145803 1.741929814 1.610519312 1.337122241 2.149737815 1.554466297 1 14.67691108 -4.255389704 23.98011117 1.58932021 1.050078438 0.193418988 0.305284644 580.4766492 2300813.742 0.071966289 0.627316287 5.55E-05 4.255389704 -0.539241772 RAAPLAFPPLGLTPSPTASSLLGESPSLPS(ph)PPSR ddPTM_HeLa_A486_30min_R1 1 RAAPLAFPPLGLTPSPTASSLLGESPSLPSPPSR 34 1 Q92570-2;Q92570;Q92570-3 Q92570-2 NR4A3 Nuclear receptor subfamily 4 group A member 3 1 0 RAAPLAFPPLGLTPSPTASSLLGES(0.003)PS(0.041)LPS(0.794)PPS(0.161)R 50.94 0.014093 47622000 12976 15244 11398 4977.3 15804 12976 15498 14966 10082 14672 TRUE FALSE FALSE 12066.44941 14036.00992 15811.61085 11587.40594 13821.71495 11375.15305 11620.23648 11558.56851 10955.91588 10998.0357 1.097145866 1.276228802 1.437675898 1.053588682 1.256743961 1.034289519 1.05657381 1.050966629 0.996170241 1 13.42495825 -6.194008765 1.191387597 1.018098938 1.250733813 0.472294364 0.101303762 0.412912805 1.211135371 0.049896335 0.047782734 6.40E-07 6.194008765 0.232634875 RAAPT(ph)TPPPPVK ddPTM_HeLa_A485_30min_R1 2 RAAPTTPPPPVK 12 1 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RAAPT(0.5)T(0.5)PPPPVK;RAAPT(0.5)T(0.5)PPPPVK ; 63.29 0.019832 2324800000 804640 1032650 897810 891350 1173100 1099080 1354340 1587380 950770 1197090 TRUE FALSE FALSE 983629.392 1153409.435 1229947.28 940042.1935 1056302.045 1156626.129 1064974.195 1198072.566 1141580.818 898677.4938 1.094529905 1.283452009 1.368619208 1.046028414 1.175396126 1.287031374 1.185046029 1.33315074 1.27028976 1 19.77744395 -6.219570169 24.84104938 1.234047038 1.200120933 0 0.119148043 2742.79938 1627306.545 0.03909685 0.039096609 6.03E-07 6.219570169 -0.033926105 RAAPT(ph)TPPPPVK ddPTM_HeLa_A486_30min_R1 2 RAAPTTPPPPVK 12 1 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RAAPT(0.5)T(0.5)PPPPVK;RAAPT(0.5)T(0.5)PPPPVK ; 85.734 0.0023669 1633340000 849770 851340 621760 285532 949260 833120 1005210 952290 699100 994250 TRUE FALSE FALSE 790205.5112 783876.7179 862522.1233 664732.926 830194.9593 730338.1249 753695.826 735474.3553 759698.5509 745283.3285 1.060275309 1.051783514 1.157307685 0.891919758 1.113932014 0.97994695 1.01128765 0.986838598 1.019341936 1 19.50742946 -5.24228114 24.99971373 1.004241902 1.085988289 0.336498124 0.057231586 1001.013547 1306227.544 0.014630913 0.025297602 5.72E-06 5.24228114 0.081746387 RAAPT(ph)TPPPPVKR ddPTM_HeLa_A485_30min_R1 1 RAAPTTPPPPVKR 13 2 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RAAPT(0.5)T(0.5)PPPPVKR 68.944 0.011382 532230000 536780 660060 541870 502100 708930 715410 875720 894090 546840 659330 TRUE FALSE FALSE 656184.8591 737248.2752 742330.2621 529528.4516 638346.44 752867.7614 688615.268 674813.0256 656585.7721 494971.1651 1.325703203 1.489477221 1.499744459 1.069816767 1.289663894 1.521033576 1.391222998 1.363338055 1.326513176 1 18.91698496 -8.396366842 2.119540415 1.00002669 1.370401192 0.441411338 0.123668974 2.796594825 13.70388172 0.125979038 0.034616217 4.01E-09 8.396366842 0.370374503 RAAPT(ph)TPPPPVKR ddPTM_HeLa_A486_30min_R1 1 RAAPTTPPPPVKR 13 2 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RAAPT(0.5)T(0.5)PPPPVKR 63.128 0.022322 571300000 490220 426260 319200 153980 465750 406620 446950 456540 333300 508670 TRUE FALSE FALSE 455858.1095 392481.6052 442802.7885 358473.2217 407331.2921 356455.3586 335118.3826 352595.8082 362190.7124 381295.7211 1.195550027 1.029336506 1.161310668 0.940144885 1.068281833 0.934852764 0.878893636 0.924730567 0.94989451 1 18.54055082 -5.30283993 0.775207834 0.930290095 1.161797056 0.584264405 0.064401677 0.626097112 0.675431229 0.030142319 0.099018153 4.98E-06 5.30283993 0.231506961 RAAPTRGS(ph)PTK ddPTM_HeLa_A485_30min_R1 1 RAAPTRGSPTK 11 2 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 RAAPT(0.269)RGS(0.719)PT(0.012)K 62.081 0.011532 201170000 121170 178130 101630 112220 139540 167920 213780 247960 130290 168300 TRUE FALSE FALSE 148123.8485 198960.754 139227.1662 118350.2944 125646.9076 176712.0315 168104.1566 187147.4212 156438.0079 126345.9073 1.172367603 1.574730501 1.101952324 0.936716487 0.994467572 1.398636769 1.330507336 1.481230577 1.238172341 1 16.94701941 -6.285052225 24.92696136 1.322336184 1.164116788 0.089864613 0.198783311 1765.5783 1863831.324 0.074201608 0.065478448 5.19E-07 6.285052225 -0.158219396 RAAPTT(ph)PPPPVK ddPTM_HeLa_A485_30min_R1 3 RAAPTTPPPPVK 12 1 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RAAPT(0.324)T(0.676)PPPPVK;RAAPT(0.118)T(0.882)PPPPVK;RAAPT(0.122)T(0.878)PPPPVK ;; 116.58 0.00020417 6017150000 1072290 1434280 1111310 1109540 1536650 1529490 1824030 2113500 1229850 1550440 TRUE FALSE FALSE 1310817.211 1602006.569 1522429.814 1170151.361 1383655.73 1609571.731 1434311.09 1595160.811 1476669.614 1163943.842 1.126185959 1.376360707 1.307992499 1.005333177 1.188765025 1.382860301 1.232285475 1.370479188 1.268677716 1 20.15059002 RAAPTT(ph)PPPPVK ddPTM_HeLa_A486_30min_R1 1 RAAPTTPPPPVK 12 1 C9JC20;C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JC20 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RAAPT(0.154)T(0.846)PPPPVK 65.472 0.015674 694910000 478770 484080 357730 173200 480670 459540 554240 608000 380030 559650 TRUE FALSE FALSE 445210.6954 445719.7378 496252.6363 403218.353 420379.8865 402846.6271 415563.2898 469571.6725 412971.3064 419509.9973 1.061263613 1.062477034 1.182933993 0.961165063 1.002073584 0.960278968 0.990592102 1.119333688 0.984413504 1 18.67834567 -5.277699835 24.99933433 1.005243712 1.098250106 0.430350715 0.052427544 814.9974125 1253000.718 0.015294656 0.022755525 5.28E-06 5.277699835 0.093006394 RAAS(ph)AATAAPTATPAAQESGTIPK ddPTM_HeLa_A485_30min_R1 2 RAASAATAAPTATPAAQESGTIPK 24 1 O00116;B8ZZ81 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 0 RAAS(0.774)AAT(0.226)AAPTATPAAQESGTIPK;RAAS(0.902)AAT(0.097)AAPT(0.001)ATPAAQESGTIPK ; 153.64 8.64E-10 463870000 112183 129015 108964 135784 158017 145542 191128 242720 121641 176474 TRUE FALSE FALSE 137137.7213 144102.182 149274.318 143201.5361 142284.2726 153162.3541 150291.9414 183192.5394 146053.2329 132482.2796 1.035140109 1.087709107 1.126749317 1.08091087 1.073987201 1.15609691 1.134430521 1.382770134 1.102435989 1 17.01543988 -6.488865741 2.283866075 1.187010242 1.083707794 0.099252316 0.093551956 0.50532297 5.258089244 0.03831169 0.030414674 3.24E-07 6.488865741 -0.103302447 RAAS(ph)AATAAPTATPAAQESGTIPK ddPTM_HeLa_A486_30min_R1 1 RAASAATAAPTATPAAQESGTIPK 24 1 O00116;B8ZZ81 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 0 RAAS(0.732)AAT(0.268)AAPTATPAAQESGTIPK 177.34 2.52E-15 362250000 86444 98785 46830 37309 81456 112800 123580 103980 86165 116060 TRUE FALSE FALSE 80384.722 90956.91683 64963.83015 86857.23749 71239.02893 98883.88287 92658.9769 80306.02387 93633.85158 86997.82058 0.923985468 1.045507994 0.746729398 0.998384062 0.818859926 1.136624828 1.065072393 0.92308087 1.076278129 1 16.40869164 -6.259259607 24.99473301 1.036957618 0.910612336 0.335639711 0.093786762 248.6818634 2851563.643 0.031030645 0.029612871 5.50E-07 6.259259607 -0.126345282 RAAS(ph)ALLLR ddPTM_HeLa_A486_30min_R1 1 RAASALLLR 9 1 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 0 RAAS(1)ALLLR 77.157 0.027098 101060000 173420 164520 173150 68498 226270 146300 183800 188890 125660 170360 TRUE FALSE FALSE 161264.1535 151482.836 240198.3171 159466.8057 197889.1067 128250.9935 137811.296 145883.8704 136552.31 127700.7471 1.262828583 1.186232966 1.880946842 1.248753897 1.54963155 1.004308873 1.079173764 1.142388543 1.069314887 1 16.96240744 -6.267056003 24.74641697 1.069195019 1.427839737 0.487828589 0.187688208 371.550744 1637019.539 0.065189914 0.059089547 5.41E-07 6.267056003 0.358644719 RAAS(ph)LNYLNQPSAAPLQVSR ddPTM_HeLa_A485_30min_R1 2 RAASLNYLNQPSAAPLQVSR 20 1 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 RAAS(0.996)LNY(0.004)LNQPSAAPLQVSR;RAAS(1)LNYLNQPSAAPLQVSR ; 126.68 3.61E-07 904520000 169979 179146 117748 212567 195972 196676 259814 343010 156362 425740 TRUE FALSE FALSE 207790.2421 200095.5663 161307.8851 224178.997 176460.3396 206973.6512 204302.6164 258886.2597 187742.4192 319610.8532 0.650135125 0.626059986 0.5047009 0.701412342 0.552109973 0.647580172 0.639223025 0.810004595 0.587409399 1 18.28595687 -12.11035434 0.231947414 1.748023889 0.584845993 0.681697118 0.075960029 32.76896166 0.718355493 11.97616044 0.129412122 7.76E-13 12.11035434 -1.163177896 RAAS(ph)LNYLNQPSAAPLQVSR ddPTM_HeLa_A486_30min_R1 1 RAASLNYLNQPSAAPLQVSR 20 1 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 RAAS(0.999)LNY(0.001)LNQPSAAPLQVSR 89.297 0.00010236 0 159550 136160 93871 71322 143470 149420 162470 157790 99427 221580 TRUE FALSE FALSE 148366.3689 125370.1857 130220.3652 166041.2204 125474.6548 130986.0796 121818.2876 121864.6615 108045.4124 166094.9258 0.893262502 0.75481045 0.7840117 0.999676659 0.755439423 0.788621802 0.733425702 0.733704904 0.650503993 1 17.34164847 RAAS(ph)SDQLR ddPTM_HeLa_A485_30min_R1 3 RAASSDQLR 9 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 RAAS(0.675)S(0.325)DQLR;RAAS(0.877)S(0.123)DQLR;RAAS(0.5)S(0.5)DQLR ;; 124.38 0.00018015 2275510000 837220 1189660 1110780 933950 1110580 817580 962280 923440 862390 936950 TRUE FALSE FALSE 1023456.701 1328780.388 1521703.745 984969.3236 1000006.756 860387.2246 756681.0169 696964.8921 1035463.763 703385.6083 1.455043562 1.889120808 2.163399034 1.400326239 1.421704886 1.223208457 1.075769831 0.990871698 1.472113945 1 19.42395629 -5.697839947 1.808339778 1.158277106 1.830582669 0.614607171 0.223285064 0.22645362 1.525553542 0.077640437 0.107889838 2.01E-06 5.697839947 0.672305563 RAAS(ph)SDQLR ddPTM_HeLa_A486_30min_R1 2 RAASSDQLR 9 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 RAAS(0.878)S(0.122)DQLR;RAAS(0.968)S(0.032)DQLR ; 110.58 0.00053623 1898340000 730510 626170 545690 202300 638630 598680 665220 710080 648670 699430 TRUE FALSE FALSE 679305.0214 576550.0087 756995.7821 470964.6237 558527.0704 524820.9485 498774.92 548410.2849 704897.2379 524288.1755 1.29567107 1.099681503 1.443854387 0.89829343 1.065305488 1.001016184 0.951337343 1.046009257 1.344484333 1 19.00000048 -5.267716586 24.99985952 1.040958603 1.261730239 0.385178701 0.136009373 542.5582495 2160813.695 0.037746256 0.057558567 5.40E-06 5.267716586 0.220771637 RAAS(ph)SDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A485_30min_R1 4 RAASSDQLRDNSPPPAFKPEPPK 23 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 RAAS(0.764)S(0.238)DQLRDNS(0.998)PPPAFKPEPPK;RAAS(0.747)S(0.255)DQLRDNS(0.998)PPPAFKPEPPK;RAAS(0.765)S(0.235)DQLRDNS(1)PPPAFKPEPPK;RAAS(0.923)S(0.08)DQLRDNS(0.997)PPPAFKPEPPK ;;; 97.352 0.00069757 6789710000 760650 621249 490819 1104470 908050 813560 1271600 1213760 618405 1407970 TRUE FALSE FALSE 929853.9683 693898.6664 672393.3728 1164804.399 817641.3536 856156.7436 999912.272 916083.4569 742513.2112 1056988.991 0.879719634 0.656486181 0.636140375 1.102002395 0.773557114 0.809995895 0.94600065 0.866691579 0.702479607 1 20.01152892 -14 0.044076129 1.639653715 0.459247439 0.116028128 0.135323764 1579.749974 5.1696317 132.1455941 35.14164573 1.00E-14 14 -1.180406277 RAAS(ph)SDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A486_30min_R1 2 RAASSDQLRDNSPPPAFKPEPPK 23 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 RAAS(0.991)S(0.009)DQLRDNS(1)PPPAFKPEPPK;RAAS(0.954)S(0.046)DQLRDNS(1)PPPAFKPEPPK ; 143.82 1.30E-09 5296300000 1031110 855450 443780 575570 1066100 1259940 1609290 1509780 791050 1642360 TRUE FALSE FALSE 958834.5137 787661.0265 615623.5008 1339956.048 932379.797 1104501.413 1206628.621 1166036.052 859618.8509 1231102.366 0.778842231 0.639801407 0.500058742 1.088419684 0.75735359 0.89716456 0.980120463 0.947147926 0.698251319 1 20.2315193 -5.255424856 24.99909189 0.903631632 0.639590859 0.499034914 0.123958908 410.7428142 1707228.702 0.033151789 0.055556145 5.55E-06 5.255424856 -0.264040773 RAASS(ph)DQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A486_30min_R1 1 RAASSDQLRDNSPPPAFKPEPPK 23 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 RAAS(0.441)S(0.564)DQLRDNS(0.996)PPPAFKPEPPK 58.861 0.014031 164280000 130740 110230 54281 67929 115010 147350 201270 183370 88197 175330 TRUE FALSE FALSE 121575.8011 101494.9733 75300.0569 158142.1449 100584.3734 129171.4551 150910.1172 141620.6539 95841.98697 131426.2268 0.925049772 0.772258139 0.572945437 1.203276917 0.765329538 0.982843823 1.148249637 1.077567677 0.729245519 1 17.00389368 -5.256753427 24.99964622 0.987230416 0.758301834 0.299877094 0.160965622 508.4268548 2712456.889 0.043948388 0.073012173 5.54E-06 5.256753427 -0.228928582 RAASSDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A485_30min_R1 2 RAASSDQLRDNSPPPAFKPEPPK 23 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 RAASSDQLRDNS(1)PPPAFKPEPPK;RAAS(0.058)S(0.264)DQLRDNS(0.677)PPPAFKPEPPK ; 153.77 4.90E-09 1435000000 708210 774130 433320 820620 1176180 1206390 1866710 2255030 883400 1614650 TRUE FALSE FALSE 865748.8712 864657.7695 593623.0999 865448.3927 1059075.389 1269554.715 1467872.159 1701980.357 1060690.277 1212147.47 0.714227346 0.713327207 0.489728448 0.713979457 0.873718269 1.047359951 1.210968298 1.404103377 0.875050522 1 20.2091338 -6.069941585 1.815488707 1.151713985 0.643496669 0.686036553 0.143508035 0.189637706 1.249816032 0.055456362 0.058100057 8.51E-07 6.069941585 -0.508217316 RAASSDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_A486_30min_R1 3 RAASSDQLRDNSPPPAFKPEPPK 23 3 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 RAAS(0.18)S(0.18)DQLRDNS(0.64)PPPAFKPEPPK;RAASS(0.001)DQLRDNS(0.999)PPPAFKPEPPK;RAASSDQLRDNS(1)PPPAFKPEPPK ;; 105.17 0.0015897 2216820000 1351340 1110460 658700 784720 1618850 1379180 2244740 2106910 793310 1861140 TRUE FALSE FALSE 1256618.044 1022463.105 913766.2806 1826867.818 1415798.738 1209030.794 1683082.31 1627212.587 862074.7495 1395098.43 0.90073791 0.73289675 0.654983377 1.309490268 1.014837883 0.866627593 1.206425492 1.166378337 0.61793113 1 20.41193548 -5.235864235 24.98097124 1.033305934 0.759875077 0.288590912 0.189023068 952.0532524 929933.6147 0.05080028 0.087950154 5.81E-06 5.235864235 -0.273430857 RAAVAASSS(ph)S ddPTM_HeLa_A485_30min_R1 1 RAAVAASSSS 10 1 P61927 P61927 RPL37 60S ribosomal protein L37 1 0 RAAVAASS(0.008)S(0.496)S(0.496) 83.869 0.013884 216480000 213000 302730 205030 290500 206770 336980 270610 404780 303030 367030 TRUE FALSE FALSE 260381.1152 338131.6401 280879.129 306369.2794 186183.2528 354623.7517 212791.9628 305507.0703 363845.3414 275536.1757 0.944997928 1.227176937 1.019391114 1.111902198 0.675712553 1.287031552 0.772283212 1.108772993 1.320499352 1 18.07188222 -9.772107402 5.600032543 0.999999997 1.047222767 0.005575468 0.19934388 1.48E-08 3.42E-09 0.183732592 0.044561693 1.69E-10 9.772107402 0.04722277 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPK ddPTM_HeLa_A485_30min_R1 2 RADDFPVRDDPSDVTDEDEGPAEPPPPPK 29 2 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 0 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK ; 93.172 0.0011147 459480000 351720 270000 295880 518730 443660 302910 425980 317710 372770 681350 TRUE FALSE FALSE 429958.9006 301574.1513 405338.3246 547066.9064 399487.6526 318769.8992 334965.8931 239791.1244 447581.5198 511501.9843 0.8405811 0.589585496 0.792447218 1.06953037 0.781008999 0.623203641 0.654867241 0.468798033 0.87503379 1 18.96438031 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPK ddPTM_HeLa_A486_30min_R1 2 RADDFPVRDDPSDVTDEDEGPAEPPPPPK 29 2 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 0 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK ; 142.18 3.37E-09 754320000 471750 573550 405510 195760 548980 635820 638810 623180 536840 606770 TRUE FALSE FALSE 438682.7611 528099.8092 562534.3319 455739.1732 480121.8094 557378.9929 478972.9814 481295.5179 583373.7234 454830.8426 0.964496512 1.161090585 1.236799001 1.001997073 1.055605215 1.225464372 1.053079379 1.058185754 1.282616896 1 18.79497056 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPKLPLPAFR ddPTM_HeLa_A485_30min_R1 4 RADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAFR 36 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 0 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR ;;; 228.14 5.88E-39 1371296000 266532 354765 315783 266698 428054 378680 456859 560705 332217 389978 TRUE FALSE FALSE 325821.1239 396251.6807 432604.2725 281267.0364 385435.4408 398507.0992 359247.3425 423191.2196 398889.9046 292763.6616 1.112915182 1.353486558 1.477656995 0.960730696 1.316541263 1.361190446 1.227089935 1.4455046 1.362498004 1 18.15937697 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPKLPLPAFR ddPTM_HeLa_A486_30min_R1 4 RADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAFR 36 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 0 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR;RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR ;;; 146.37 1.24E-08 1212750000 202691 205784 155294 87995 251656 177067 234187 233433 170342 238962 TRUE FALSE FALSE 188483.4076 189476.9264 215427.9957 204856.807 220090.9579 155222.2738 175590.9356 180285.4017 185107.3817 179124.3598 1.052248883 1.057795414 1.202672802 1.143656883 1.228704784 0.866561499 0.980273905 1.006481764 1.033401498 1 17.45060202 -6.257193703 24.99957698 0.97793198 1.136631187 0.597069148 0.065583304 281.384833 1656864.364 0.023299791 0.022493949 5.53E-07 6.257193703 0.158699207 RADLNQGIGEPQS(ph)PSR ddPTM_HeLa_A485_30min_R1 8 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.984)PS(0.016)R;RADLNQGIGEPQS(0.999)PS(0.001)R;RADLNQGIGEPQS(0.998)PS(0.002)R;RADLNQGIGEPQS(0.5)PS(0.5)R;RADLNQGIGEPQS(0.996)PS(0.004)R;RADLNQGIGEPQS(0.985)PS(0.015)R;RADLNQGIGEPQS(0.944)PS(0.056)R;RADLNQGIGEPQS(0.5)PS(0.5)R ;;;;;;; 252.32 1.16E-43 12628890000 3551935 4660734 4271353 3823246 5535595 4253035 5168414 5916713 4012014 5545132 TRUE FALSE FALSE 4342050.687 5205766.298 5851504.221 4032100.248 4984451.725 4475717.336 4064140.127 4465629.86 4817188.409 4162832.643 1.043051945 1.250534611 1.405654448 0.968595328 1.197370193 1.075161487 0.976291981 1.072738263 1.157190025 1 21.98913413 -5.277146999 24.99710364 1.069316827 1.234825784 0.344452684 0.106759042 901.2511094 1434248.596 0.030238854 0.045021751 5.28E-06 5.277146999 0.165508957 RADLNQGIGEPQS(ph)PSR ddPTM_HeLa_A486_30min_R1 5 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.99)PS(0.01)R;RADLNQGIGEPQS(0.999)PS(0.001)R;RADLNQGIGEPQS(0.767)PS(0.233)R;RADLNQGIGEPQS(1)PSR;RADLNQGIGEPQS(0.981)PS(0.019)R ;;;; 212.08 5.12E-26 9240386000 4257800 4507511 3875254 1479112 4931625 3851058 4481106 4545567 3438865 4368643 TRUE FALSE FALSE 3959350.207 4150319.412 5375856.132 3443447.486 4313054.607 3375953.619 3359885.882 3510640.623 3736948.587 3274706.358 1.209070303 1.267386739 1.64162998 1.051528629 1.317081331 1.030917966 1.026011347 1.072047457 1.141155322 1 21.64293412 -5.925115417 1.430599452 1.057939061 1.339387988 0.404417279 0.144006404 0.409672801 1.737000176 0.057416122 0.068662844 1.19E-06 5.925115417 0.281448927 RADLNQGIGEPQS(ph)PSRR ddPTM_HeLa_A485_30min_R1 1 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.669)PS(0.331)RR 198.14 4.07E-25 2817200000 610180 971900 872480 637150 1246000 1001000 1241500 1557000 956850 969130 TRUE FALSE FALSE 745912.4359 1085555.251 1195246.659 671955.8912 1121943.865 1053410.812 976243.3829 1175143.309 1148881.018 727543.7265 1.025247568 1.492082484 1.64285199 0.923595197 1.542098192 1.447900344 1.341834652 1.61522018 1.579122981 1 19.47267443 RADLNQGIGEPQS(ph)PSRR ddPTM_HeLa_A486_30min_R1 3 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.999)PS(0.001)RR;RADLNQGIGEPQS(0.977)PS(0.023)RR;RADLNQGIGEPQS(0.883)PS(0.117)RR ;; 205.43 2.35E-25 4954760000 954980 1002860 970210 366112 1404880 865040 1152390 1224860 836280 1116130 TRUE FALSE FALSE 888040.8335 923389.7212 1345901.295 852327.2383 1228666.85 758320.1599 864049.8333 945986.1165 908769.4237 836643.7832 1.061432418 1.10368324 1.608690965 1.018745678 1.468566282 0.906383547 1.032757131 1.130691622 1.086208303 1 19.67425397 -6.276186547 24.99863057 1.039473168 1.250804215 0.277724029 0.177955551 1167.452345 1978999.07 0.061446228 0.054412673 5.29E-07 6.276186547 0.211331047 RADLNQGIGEPQSPS(ph)RR ddPTM_HeLa_A485_30min_R1 1 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.253)PS(0.747)RR 62.099 0.014766 2363100000 133880 143790 160280 123650 244910 177170 237830 297460 190200 196150 TRUE FALSE FALSE 163661.1441 160604.9897 219574.2418 130404.6864 220525.9005 186446.3472 187015.6776 224507.4686 228371.3954 147253.4149 1.111425119 1.090670731 1.491131747 0.885580049 1.497594475 1.266159752 1.270026082 1.524633359 1.55087334 1 17.16794157 -5.794835625 24.99999229 1.369433958 1.16558665 0.189544327 0.205764608 314.5057433 235433.2492 0.061932605 0.070229069 1.60E-06 5.794835625 -0.203847308 RADLNQGIGEPQSPS(ph)RR ddPTM_HeLa_A486_30min_R1 1 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.219)PS(0.781)RR 199.28 3.80E-25 832150000 232660 234300 228000 90203 311130 219060 259620 297900 189360 281020 TRUE FALSE FALSE 216351.7355 215733.2147 316287.7061 209997.1426 272105.1742 192034.6044 194660.33 230074.6731 205773.8773 210650.7629 1.027063622 1.024127384 1.501479044 0.996897138 1.291736002 0.911625488 0.924090316 1.092209067 0.976848479 1 17.68449362 -6.271227816 24.93248809 0.983163714 1.169245176 0.287602972 0.147371503 915.5483954 2332019.982 0.051315203 0.045788079 5.36E-07 6.271227816 0.186081462 RADNCS(ph)PVAEEETTGSAESTLPK ddPTM_HeLa_A485_30min_R1 2 RADNCSPVAEEETTGSAESTLPK 23 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 RADNCS(1)PVAEEETTGSAESTLPK;RADNCS(1)PVAEEETTGSAESTLPK ; 120.32 2.57E-05 1190640000 283740 284350 287640 456300 411140 306560 423300 422020 300840 519540 TRUE FALSE FALSE 346856.9841 317602.259 394050.0057 481226.5136 370205.458 322611.0076 332858.497 318518.9333 361215.8285 390028.2394 0.889312488 0.814305804 1.010311475 1.233824798 0.949176035 0.827147819 0.85342153 0.816656081 0.926127372 1 18.57321906 -6.01063068 24.73488072 0.873136644 0.990680085 0.154028533 0.112019668 830.0281671 1931267.514 0.039083734 0.041616201 9.76E-07 6.01063068 0.117543441 RADNCS(ph)PVAEEETTGSAESTLPK ddPTM_HeLa_A486_30min_R1 2 RADNCSPVAEEETTGSAESTLPK 23 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 RADNCS(1)PVAEEETTGSAESTLPK;RADNCS(1)PVAEEETTGSAESTLPK ; 153.25 5.39E-10 1395820000 346020 521120 314140 163173 461320 463530 537840 532620 356100 487990 TRUE FALSE FALSE 321765.7848 479824.5533 435783.421 379874.9903 403456.944 406344.3814 403266.7433 411354.053 386967.0347 365794.1277 0.879636278 1.311733888 1.191335202 1.038493955 1.102961785 1.110855398 1.102441818 1.124550729 1.057882031 1 18.48067239 -7.99471948 3.156821657 1.000254431 1.114772109 0.094860589 0.103077106 0.50537006 12.22879524 0.095382161 0.025452307 1.01E-08 7.99471948 0.114517678 RADS(ph)GEEENTKNGGEK ddPTM_HeLa_A485_30min_R1 1 RADSGEEENTKNGGEK 16 2 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 RADS(0.926)GEEENT(0.074)KNGGEK 113.63 0.0001067 199590000 121490 127760 88582 131430 206840 183810 270410 332110 135150 203470 TRUE FALSE FALSE 148515.0314 142700.4206 121352.168 138609.6881 186246.2833 193434.0074 212634.6945 250659.5018 162273.3653 152748.6736 0.972283607 0.934217085 0.794456444 0.90743628 1.219298858 1.266354744 1.392055914 1.640992985 1.062355316 1 17.22080033 -5.841985968 3.085536876 1.315415876 0.891923571 0.508066638 0.172079344 0.187199096 3.588406121 0.055364205 0.065758118 1.44E-06 5.841985968 -0.423492304 RAEDGSVIDYELIDQDAR ddPTM_HeLa_A485_30min_R1 3 RAEDGSVIDYELIDQDAR 18 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 0 0 ;; ;; 310.08 1.02E-88 2013469000 834523 1314899 1156875 1088888 1259410 1346551 1667540 1725480 1334963 1910010 FALSE FALSE TRUE 1020159.762 1468665 1584851.204 1148371.194 1134018.718 1417054.328 1311256.456 1302303.325 1602877.829 1433879.658 0.711468188 1.024259596 1.105288854 0.800883943 0.790874403 0.98826587 0.914481525 0.908237534 1.117860777 1 20.45149252 -7.747363243 24.40748022 1.058930363 0.911844433 0.223261387 0.114000144 244.2236874 423480.9225 0.079358535 0.029643584 1.79E-08 7.747363243 -0.14708593 RAEDGSVIDYELIDQDAR ddPTM_HeLa_A486_30min_R1 3 RAEDGSVIDYELIDQDAR 18 1 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 0 0 ;; ;; 214.66 4.46E-26 2343060000 836659 1140628 1068840 389120 1542830 1066597 1132942 1379920 1055512 1240600 FALSE FALSE TRUE 778013.5246 1050240.483 1482723.473 905891.025 1349313.875 935011.1065 849467.9286 1065742.339 1147004.63 929945.685 0.836622544 1.1293568 1.594419434 0.974133263 1.450959875 1.005447008 0.913459724 1.146026436 1.233410347 1 19.82678693 RAEDKDEGIGS(ph)PDIWEDEKAEDLR ddPTM_HeLa_A485_30min_R1 1 RAEDKDEGIGSPDIWEDEKAEDLR 24 3 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 0 RAEDKDEGIGS(1)PDIWEDEKAEDLR 51.844 0.035567 185260000 29937 19864 21387 64929 33181 28185 44834 31167 22763 79381 TRUE FALSE FALSE 36596.38237 22186.92201 29298.94129 68475.90686 29877.38313 29660.72302 35254.84964 23523.24438 27331.32531 59592.7776 0.61410768 0.372308909 0.491652554 1.149063857 0.50135913 0.497723453 0.591596013 0.394733143 0.458634862 1 15.86284987 -10.13268445 4.032866289 1.000128843 0.565058113 0.282452481 0.208720263 295678157.9 508312429 519614.5825 0.054353141 7.37E-11 10.13268445 -0.43507073 RAEFTVETR ddPTM_HeLa_A485_30min_R1 2 RAEFTVETR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 144.55 0.00016556 153441000 101427 127306 141416 116089 174251 121989 150619 158102 132374 167213 FALSE FALSE TRUE 123989.0862 142193.3293 193731.6632 122430.6481 156901.9586 128376.1554 118438.0202 119327.2366 158940.2476 125529.8764 0.987725709 1.132744916 1.543311192 0.975310831 1.249917255 1.022674116 0.943504635 0.950588338 1.266154736 1 16.93767124 -6.276519663 23.47300515 1.027678624 1.184355364 0.145647487 0.169960088 688.0720266 1071003.701 0.059930135 0.053104017 5.29E-07 6.276519663 0.15667674 RAEFTVETR ddPTM_HeLa_A486_30min_R1 2 RAEFTVETR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 87.789 0.0038434 20373000 34235 40490 31798 16577 51302 37420 41845 41847 39814 43594 FALSE FALSE TRUE 31835.30329 37281.42494 44111.03718 38592.09376 44867.22479 32803.50086 31374.93841 32319.35161 43265.10958 32677.77865 0.974218708 1.140880025 1.349878694 1.180988897 1.373019423 1.00384733 0.960130698 0.989031475 1.323991757 1 14.9960223 -6.29643974 24.93834602 1.048760355 1.207150349 0.216029441 0.140991888 936.1435796 667015.3205 0.050756275 0.044764481 5.05E-07 6.29643974 0.158389994 RAELGS(ph)WSSQEHLEWEPACQTPQPSAR ddPTM_HeLa_A485_30min_R1 1 RAELGSWSSQEHLEWEPACQTPQPSAR 27 1 B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6;H3BTL6 B7Z896 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 1 0 RAELGS(0.333)WS(0.333)S(0.333)QEHLEWEPACQTPQPSAR 57.417 0.022765 427110000 104160 99373 64082 124950 108350 93793 173640 144020 83486 148650 TRUE FALSE FALSE 127330.0327 110993.8079 87788.59847 131775.7021 97562.29356 98703.85645 136540.3955 108698.8692 100240.8744 111594.2907 1.141008486 0.994619055 0.786676432 1.180846272 0.874258826 0.884488407 1.223542841 0.974054035 0.898261674 1 16.76790369 -9.535174761 16.37421131 1 0.993875116 7.42E-06 0.137147318 0 0 0.12997824 0.031524354 2.92E-10 9.535174761 -0.006124884 RAELGS(ph)WSSQEHLEWEPACQTPQPSAR ddPTM_HeLa_A486_30min_R1 1 RAELGSWSSQEHLEWEPACQTPQPSAR 27 1 B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6;H3BTL6 B7Z896 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 1 0 RAELGS(0.466)WS(0.317)S(0.217)QEHLEWEPACQTPQPSAR 162.45 9.65E-14 337180000 51341 55608 38456 17206 80477 63195 59471 70805 55766 55904 TRUE FALSE FALSE 47742.26103 51201.41956 53347.19309 40056.43754 70382.82424 55398.64342 44590.72678 54684.24716 60599.84178 41905.27453 1.139290019 1.221837111 1.273042444 0.955880566 1.679569578 1.32199691 1.064083872 1.304949026 1.446114898 1 15.35484422 RAELPGSSS(ph)PLLAQPR ddPTM_HeLa_A486_30min_R1 1 RAELPGSSSPLLAQPR 16 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 RAELPGS(0.001)S(0.17)S(0.83)PLLAQPR 148.2 3.64E-08 484830000 294880 430710 283410 143460 412400 382660 420160 412300 316550 432830 TRUE FALSE FALSE 274210.4348 396578.971 393153.942 333982.1301 360672.9465 335451.2998 315031.524 318428.2904 343988.8089 324446.5507 0.845163661 1.222324509 1.211767982 1.029390293 1.111655974 1.033918527 0.97098127 0.981450688 1.060232596 1 18.3076213 -6.429318636 4.000964535 1.001443113 1.095535035 0.120480453 0.100896152 0.456360356 13.12918641 0.03736705 0.032032334 3.72E-07 6.429318636 0.094091922 RAEPPKPEVVDSTESIPVS(ph)DEDS(ph)DAMVDDPNDEDFVPFRPR ddPTM_HeLa_A485_30min_R1 1 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 2 0 RAEPPKPEVVDS(0.004)T(0.004)ES(0.004)IPVS(0.992)DEDS(0.996)DAMVDDPNDEDFVPFRPR 53.793 0.0072875 104200000 19592 19462 17582 21562 28679 28168 30604 40840 20073 34800 TRUE FALSE FALSE 23950.17281 21737.9116 24086.31345 22739.87746 25823.61806 29642.83292 24065.20539 30823.92597 24101.46698 26125.00045 0.91675301 0.832073157 0.921964135 0.870425917 0.988463832 1.134653872 0.921156171 1.179863175 0.922544175 1 14.67314344 -5.887502959 4.31854556 1.038382927 0.884458789 0.427240656 0.079770285 0.188555412 6.214160881 0.02333357 0.026781605 1.30E-06 5.887502959 -0.153924138 RAEPPKPEVVDSTESIPVS(ph)DEDS(ph)DAMVDDPNDEDFVPFRPR ddPTM_HeLa_A486_30min_R1 1 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 2 0 RAEPPKPEVVDS(0.005)T(0.005)ES(0.005)IPVS(0.992)DEDS(0.992)DAMVDDPNDEDFVPFRPR 57.832 0.0053721 256370000 17119 16454 11797 8444.1 18848 17083 21701 26637 13774 23240 TRUE FALSE FALSE 15919.0465 15150.12512 16365.11433 19658.29154 16483.90809 14975.47315 16271.18027 20572.33658 14967.94141 17420.55273 0.913808347 0.869669599 0.939414184 1.12845395 0.946233357 0.859643972 0.934022044 1.180923298 0.859211624 1 14.08850278 -5.001919793 24.61897845 0.989005978 0.894939657 0.132756317 0.097891419 125.41716 1608433.021 0.026032152 0.052859586 9.96E-06 5.001919793 -0.094066321 RAEPPKPEVVDSTESIPVS(ph)DEDSDAMVDDPNDEDFVPFRPR ddPTM_HeLa_A485_30min_R1 1 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 RAEPPKPEVVDSTESIPVS(1)DEDSDAMVDDPNDEDFVPFRPR 224.75 1.45E-40 971090000 202420 191410 178800 225850 300820 230640 337660 393440 173030 308670 TRUE FALSE FALSE 247447.6307 213793.7345 244945.5605 238187.6136 270869.3046 242715.9538 265516.1826 296948.2231 207755.5339 231724.2497 1.067853844 0.922621326 1.057056225 1.02789248 1.168929471 1.047434415 1.145828212 1.281472369 0.896563628 1 17.8220495 -5.432116238 2.332929928 1.10412164 1.002898561 0.078785353 0.104570167 0.58655131 6.270758436 0.031121484 0.050381575 3.70E-06 5.432116238 -0.101223078 RAEPPKPEVVDSTESIPVS(ph)DEDSDAMVDDPNDEDFVPFRPR ddPTM_HeLa_A486_30min_R1 1 RAEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 41 3 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 RAEPPKPEVVDSTESIPVS(0.999)DEDSDAMVDDPNDEDFVPFRPR 133.69 4.75E-08 313400000 18452 24402 14429 12737 24749 24065 28894 30570 21239 32685 TRUE FALSE FALSE 17158.61009 22468.29665 20016.29522 29652.37969 21644.74964 21096.10497 21664.41559 23609.87834 23080.01362 24500.46326 0.70033819 0.917055993 0.816976194 1.210278327 0.883442465 0.861049228 0.884245141 0.963650283 0.94202356 1 14.58052141 -3.963635012 1.495232734 0.946796995 0.424277522 0.343313669 0.101851873 2.992341243 3.494261823 0.028882342 2.859641306 0.000108734 3.963635012 -0.522519473 RAETFAGYDCTNS(ph)PTK ddPTM_HeLa_A485_30min_R1 1 RAETFAGYDCTNSPTK 16 1 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 RAETFAGYDCT(0.034)NS(0.864)PT(0.103)K 158 5.99E-09 536140000 327730 272030 219020 452390 388920 298730 447520 372350 298560 632510 TRUE FALSE FALSE 400632.4078 303841.5422 300044.6122 477102.9202 350197.7592 314371.0409 351903.6961 281030.5787 358478.2534 474836.8975 0.843726362 0.639886125 0.631889842 1.004772213 0.737511683 0.662061105 0.741104362 0.591846548 0.75495029 1 18.85707252 -8.041522329 23.41390384 1.000000002 0.728825534 0.329759025 0.114062468 4981.340359 2808908.786 0.112032743 0.02892673 9.09E-09 8.041522329 -0.271174468 RAETFAGYDCTNS(ph)PTK ddPTM_HeLa_A486_30min_R1 3 RAETFAGYDCTNSPTK 16 1 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 RAETFAGYDCTNS(0.874)PT(0.126)K;RAETFAGYDCT(0.007)NS(0.992)PT(0.001)K;RAETFAGYDCT(0.003)NS(0.991)PT(0.006)K ;; 175.77 7.05E-13 1135720000 972240 1027700 576570 463110 926210 1060730 1300060 1243130 778120 1538440 TRUE FALSE FALSE 904090.9967 946261.3092 799833.3451 1078143.484 810036.1052 929867.9173 974771.2374 960096.4363 845568.0681 1153204.61 0.783981427 0.820549364 0.693574529 0.934910834 0.702421841 0.806333853 0.845271714 0.832546478 0.73323334 1 20.13721708 -10.90219491 2.391533093 1.118528556 0.796884667 0.445548068 0.068649689 90742566.18 46677286.37 60475198.08 0.016282808 1.25E-11 10.90219491 -0.321643889 RAEVLGHKT(ph)PEPAPR ddPTM_HeLa_A485_30min_R1 6 RAEVLGHKTPEPAPR 15 2 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8-7 9-Sep Septin-9 1 0 RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR ;;;;; 139.11 3.90E-06 11193150000 7287600 7401060 5844480 8943050 10740460 8586150 12055400 12306200 6646430 13058270 TRUE FALSE FALSE 8908701.478 8266549.586 8006596.361 9431586.177 9671102.09 9035707.537 9479665.306 9288085.155 7980307.536 9803083.609 0.908765225 0.843260133 0.816742637 0.962104023 0.986536734 0.92172095 0.967008513 0.947465667 0.814060948 1 23.2248042 -5.268947124 24.94684722 0.942475934 0.854956411 0.361756769 0.052608026 593.2402277 1971228.741 0.014759486 0.022374902 5.38E-06 5.268947124 -0.087519523 RAEVLGHKT(ph)PEPAPR ddPTM_HeLa_A486_30min_R1 6 RAEVLGHKTPEPAPR 15 2 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8-7 9-Sep Septin-9 1 0 RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR;RAEVLGHKT(1)PEPAPR ;;;;; 139.11 3.90E-06 8946780000 5756260 5483600 3341770 2985190 6254740 5659140 7390350 6925720 4219410 7611600 TRUE FALSE FALSE 5352775.899 5049059.565 4635792.84 6949673.183 5470212.186 4960972.845 5541206.263 5348884.743 4585151.856 5705605.817 0.938160832 0.884929616 0.812497917 1.218042993 0.958743447 0.869490989 0.971186311 0.937478844 0.803622263 1 22.44394865 -9.661552482 13.91879881 1.000000013 0.936318522 0.031650602 0.110062998 0 0 0.108293666 0.026265072 2.18E-10 9.661552482 -0.063681491 RAFAQKIS(ph)R ddPTM_HeLa_A486_30min_R1 1 RAFAQKISR 9 2 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 RAFAQKIS(1)R 46.844 0.026632 143330000 86023 90287 76502 41787 138390 96239 126130 136810 75104 102580 TRUE FALSE FALSE 79993.23192 83132.3293 106125.6232 97282.2478 121031.8358 84366.01067 94570.93993 105661.3495 81614.07519 76893.30032 1.040314717 1.081138785 1.380167359 1.265158959 1.574023163 1.097182854 1.229898308 1.374129464 1.061393839 1 16.23057028 -7.908907011 6.032756225 1.001821684 1.257902546 0.260046768 0.152951035 0.265589445 13.04972476 0.151383418 0.0393133 1.23E-08 7.908907011 0.256080862 RAFGS(ph)GYR ddPTM_HeLa_A485_30min_R1 1 RAFGSGYR 8 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 RAFGS(0.999)GY(0.001)R 58.172 0.022325 232880000 93876 114280 126480 78821 140530 119250 127260 165330 119430 119360 TRUE FALSE FALSE 114758.3923 127644.0519 173270.2153 83126.79164 126538.3398 125493.7456 100069.8614 124782.5583 143398.5055 89605.74866 1.28070346 1.424507398 1.933695303 0.927694851 1.412167653 1.400509984 1.11677948 1.392573134 1.600327074 1 16.45130367 -5.267232767 24.99198095 1.286341137 1.534122581 0.209945864 0.247791044 826.1215327 3563790.333 0.068873754 0.105275843 5.40E-06 5.267232767 0.247781444 RAFGS(ph)GYR ddPTM_HeLa_A486_30min_R1 2 RAFGSGYR 8 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 RAFGS(0.995)GY(0.005)R;RAFGS(1)GYR ; 57.225 0.023484 251753000 153452 190594 130821 58323 168976 158678 189934 235200 149118 190371 TRUE FALSE FALSE 142695.8072 175490.6373 181478.3947 135778.8915 147781.4544 139101.9217 142410.5043 181650.0944 162043.6683 142700.8625 0.999964574 1.229779794 1.271739999 0.951493138 1.035603092 0.974779824 0.997965267 1.272943213 1.135547925 1 17.12263453 -5.259046599 24.99732482 1.057762034 1.173423283 0.18397288 0.109939076 396.6527806 4143804.103 0.03237095 0.052764876 5.51E-06 5.259046599 0.115661249 RAFS(ph)TEK ddPTM_HeLa_A485_30min_R1 4 RAFSTEK 7 1 H0YJD9;Q9NZ32 H0YJD9 ACTR10 Actin-related protein 10 1 0 RAFS(0.584)T(0.416)EK;RAFS(0.758)T(0.242)EK;RAFS(0.941)T(0.059)EK;RAFS(0.754)T(0.246)EK ;;; 110.47 0.0017467 1588490000 882560 974180 776490 1202590 1385660 1158670 1770640 2092790 1370710 2305220 TRUE FALSE FALSE 1078882.427 1088101.877 1063745.963 1268284.447 1247698.825 1219336.17 1392328.299 1579529.971 1645798.924 1730571.078 0.623425666 0.628753069 0.614679152 0.732870474 0.720975197 0.704586009 0.804548462 0.912721812 0.951014925 1 20.72281677 -7.036809015 0.647085705 1.015541982 0.630529725 0.947309034 0.030868973 0.164527713 0.135945362 0.031119791 0.018238404 9.19E-08 7.036809015 -0.385012257 RAFS(ph)TEK ddPTM_HeLa_A486_30min_R1 1 RAFSTEK 7 1 H0YJD9;Q9NZ32 H0YJD9 ACTR10 Actin-related protein 10 1 0 RAFS(0.963)T(0.037)EK 83.783 0.0055979 410750000 231360 229600 134010 131960 229590 334020 411610 433500 208720 413500 TRUE FALSE FALSE 215142.8587 211405.6598 185902.2609 307209.5489 200792.6814 292812.0085 308620.8244 334801.5132 226812.0177 309956.9086 0.694105706 0.682048549 0.599768083 0.991136317 0.647808375 0.944686182 0.995689452 1.080155028 0.731753387 1 18.24170813 -5.76611819 0.847900987 0.96189746 0.658233005 0.410788457 0.13157303 0.625948986 0.974659154 0.068130642 0.112702659 1.71E-06 5.76611819 -0.303664455 RAFS(ph)WLR ddPTM_HeLa_A485_30min_R1 2 RAFSWLR 7 1 Q9P206-2 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 RAFS(1)WLR;RAFS(1)WLR ; 96.342 0.0031588 1451150000 326670 470700 429950 269240 515730 440160 516340 616560 442760 457060 TRUE FALSE FALSE 399336.6145 525744.2705 589006.3967 283947.8994 464382.1104 463206.097 406019.7409 465347.6933 531617.8708 343123.3536 1.16382814 1.532231091 1.716602471 0.827538833 1.35339698 1.349969602 1.183305469 1.356211078 1.549349134 1 18.3883678 -5.219014266 24.99985076 1.254257425 1.477021433 0.181329809 0.229514813 904.4568824 532968.2244 0.061782138 0.107008987 6.04E-06 5.219014266 0.222764008 RAFS(ph)WLR ddPTM_HeLa_A486_30min_R1 2 RAFSWLR 7 1 Q9P206-2 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 RAFS(1)WLR;RAFS(1)WLR ; 105.2 0.0020408 1162620000 366110 429070 353250 168610 487140 386550 434240 511190 362850 412330 TRUE FALSE FALSE 340447.5796 395068.9306 490037.8604 392532.6011 426038.3588 338861.3912 325588.5591 394803.1962 394302.1302 309079.8842 1.10148734 1.278209779 1.585473159 1.270003715 1.378408562 1.096355371 1.053412324 1.27735002 1.275728866 1 18.23762024 -6.259577003 24.98689206 1.152456378 1.331913021 0.297424892 0.13901867 237.686586 3188979.261 0.048974273 0.046586243 5.50E-07 6.259577003 0.179456642 RAFST(ph)EK ddPTM_HeLa_A486_30min_R1 3 RAFSTEK 7 1 H0YJD9;Q9NZ32 H0YJD9 ACTR10 Actin-related protein 10 1 0 RAFS(0.267)T(0.733)EK;RAFS(0.452)T(0.548)EK;RAFS(0.298)T(0.702)EK ;; 111.31 0.0025054 998960000 855890 936530 465150 452962 933980 1288200 1613980 1727080 856650 1628330 TRUE FALSE FALSE 795896.5308 862315.952 645268.5371 1054518.427 816831.5194 1129274.981 1210145.133 1333861.586 930905.1117 1220585.569 0.652061233 0.706477263 0.528654896 0.863944695 0.669212827 0.925191162 0.991446371 1.09280465 0.762670914 1 20.21914201 -6.319658836 3.749151653 0.968786038 0.684967252 0.607013818 0.108797357 0.161204481 4.600199506 0.038846406 0.034682416 4.79E-07 6.319658836 -0.283818786 RAGAES(ph)PTMSVDGR ddPTM_HeLa_A486_30min_R1 1 RAGAESPTMSVDGR 14 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 RAGAES(1)PTMSVDGR 101.67 0.00034062 270300000 139290 129120 130650 52398 169720 109480 158070 148370 115330 142870 TRUE FALSE FALSE 129526.4903 118888.061 181241.1789 121985.192 148432.135 95973.47071 118519.2141 114589.3899 125326.8973 107094.4221 1.209460659 1.110123745 1.692349381 1.139043376 1.385993147 0.896157511 1.106679618 1.06998467 1.17024673 1 16.70852381 -6.249532502 24.95072691 1.056616863 1.308468195 0.377298765 0.166063873 834.0978427 1747843.026 0.054360468 0.053951593 5.63E-07 6.249532502 0.251851332 RAGDLLEDS(ph)PK ddPTM_HeLa_A485_30min_R1 9 RAGDLLEDSPK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK ;;;;;;;; 137.73 8.86E-06 28169326000 11038861 9299398 6499465 20260140 11217730 9257610 15295760 11723200 7778239 24851040 TRUE FALSE FALSE 13494417.55 10386881.7 8903887.569 21366900.15 10100853.41 9742324.145 12027695.92 8848066.819 9339260.221 18656133.08 0.723323397 0.556754267 0.477263296 1.145301658 0.541422672 0.522204902 0.644704659 0.474271211 0.5006 1 24.15314665 -10.09097336 4.767613862 1.000012511 0.621160613 0.263054578 0.190481426 261353038.7 13.80311306 50385.42967 0.046801541 8.11E-11 10.09097336 -0.378851898 RAGDLLEDS(ph)PK ddPTM_HeLa_A486_30min_R1 10 RAGDLLEDSPK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK ;;;;;;;;; 190.81 2.01E-10 74809530000 16232190 15517200 6480623 12140930 10241460 16673310 22910820 18671920 11325750 33391880 TRUE FALSE FALSE 15094397.3 14287560.56 8990093.783 28264698.61 8956880.589 14616326.53 17178290.51 14420731.42 12307475.13 25030335.9 0.603044137 0.570809781 0.359167924 1.129217711 0.357841006 0.583944482 0.686298841 0.57613016 0.491702356 1 24.57717432 -11.13656442 2.289335011 1.825455339 0.598172911 0.260815129 0.204317 15286437.01 3773094.038 65539750.93 0.048679904 7.30E-12 11.13656442 -1.227282428 RAGDLLEDS(ph)PKRPK ddPTM_HeLa_A485_30min_R1 7 RAGDLLEDSPKRPK 14 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK ;;;;;; 142.26 1.01E-07 92559800000 9629190 8960710 5420750 15305900 14020890 13859960 25704580 27338540 9099020 22998940 TRUE FALSE FALSE 11771170.1 10008587.09 7426111.001 16142022.56 12624920.96 14585646.07 20212586.5 20633720.2 10925109.85 17265727.52 0.681765079 0.57967943 0.430107043 0.934917022 0.7312128 0.844774485 1.170676791 1.195068101 0.632762786 1 24.04140779 -5.796368278 1.113040579 0.999017864 0.575656686 0.4371653 0.180940721 0.451699382 1.190944742 0.080226947 0.115511109 1.60E-06 5.796368278 -0.423361178 RAGDLLEDS(ph)PKRPK ddPTM_HeLa_A486_30min_R1 8 RAGDLLEDSPKRPK 14 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK;RAGDLLEDS(1)PKRPK ;;;;;;; 179.74 1.56E-16 95044120000 8490590 6785880 3593189 6678330 8555640 9636790 15238710 14667160 5289280 14989200 TRUE FALSE FALSE 7895443.486 6248142.155 4984568.01 15547489.74 7482511.853 8447900.83 11425823.58 11327767.85 5747759.049 11235806.76 0.702703745 0.556091991 0.443632408 1.383744851 0.665952345 0.751873098 1.01691172 1.008184645 0.511557307 1 23.42160038 RAGELTEDEVER ddPTM_HeLa_A485_30min_R1 1 RAGELTEDEVER 12 1 P62269 P62269 RPS18 40S ribosomal protein S18 0 0 123.02 0.00062661 11297000 4718.7 6088.3 9361.9 5751.5 9339.7 6003.2 6536.4 7251.6 7231.9 7327.8 FALSE FALSE TRUE 5768.358536 6800.273724 12825.25639 6065.689881 8409.806674 6317.518269 5139.844743 5473.13373 8683.275995 5501.114318 1.048580015 1.236162954 2.331392451 1.102629309 1.52874603 1.148407014 0.934327928 0.994913651 1.578457653 1 12.42550817 -6.298908649 6.921281148 1.117167151 1.467391711 0.153048229 0.372547711 0.43272303 64.09667409 0.133272357 0.118727772 5.02E-07 6.298908649 0.35022456 RAGSSASSPPSAS(ph)SSPHPSAAVPAADPADSASGSSNKR ddPTM_HeLa_A485_30min_R1 1 RAGSSASSPPSASSSPHPSAAVPAADPADSASGSSNKR 38 2 G4U4J3;Q8NDF8-4;Q8NDF8-2;Q8NDF8;Q8NDF8-3;Q8NDF8-5 G4U4J3 PAPD5 Non-canonical poly(A) RNA polymerase PAPD5 1 0 RAGS(0.034)S(0.034)AS(0.138)S(0.165)PPS(0.165)AS(0.198)S(0.198)S(0.067)PHPSAAVPAADPADSASGSSNKR 77.445 0.00030663 107220000 34175 68323 62198 11240 96124 51271 60933 78747 57925 30699 TRUE FALSE FALSE 41777.11085 76312.78052 85207.62847 11854.01274 86553.55705 53955.47028 47914.16677 59434.17478 69550.01618 23046.30427 1.812746649 3.311280612 3.697236115 0.514356341 3.755637174 2.341176687 2.07903906 2.578902633 3.017838147 1 14.4922478 -10.19332242 5.859805111 0.999970545 2.57653732 0.206033247 0.923022627 0.000341542 4.70E-05 0.856277336 0.2076739 6.41E-11 10.19332242 1.576566775 RAHT(ph)PTPGIYMGR ddPTM_HeLa_A485_30min_R1 4 RAHTPTPGIYMGR 13 1 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RAHT(0.99)PT(0.01)PGIYMGR;RAHT(0.97)PT(0.03)PGIYMGR;RAHT(0.998)PT(0.002)PGIYMGR;RAHT(0.972)PT(0.028)PGIYMGR ;;; 117.93 0.00012412 1668840000 414697 472961 444648 521701 710453 476998 657778 660320 507523 803116 TRUE FALSE FALSE 506944.917 528269.6747 609141.7985 550200.2046 639717.8048 501972.8777 517238.3567 498375.4847 609378.2108 602913.9615 0.840824644 0.876194131 1.010329562 0.912568359 1.061043276 0.832577963 0.857897461 0.826611285 1.010721678 1 19.20159261 -6.448910508 0.006875528 1.839176279 2.91E-05 0.063761897 0.08156766 22832.05161 71.6885243 9437.01678 9734.097681 3.56E-07 6.448910508 -1.839147187 RAHT(ph)PTPGIYMGR ddPTM_HeLa_A486_30min_R1 4 RAHTPTPGIYMGR 13 1 Q13595;Q13595-3;Q13595-4;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RAHT(0.773)PT(0.227)PGIYMGR;RAHT(0.936)PT(0.064)PGIYMGR;RAHT(0.984)PT(0.016)PGIYMGR;RAHT(0.991)PT(0.009)PGIYMGR ;;; 125.86 2.55E-05 921330000 482256 555181 522763 189386 740060 554870 612580 649450 481129 569120 TRUE FALSE FALSE 448452.3448 511186.4356 725190.8337 440900.179 647234.774 486415.7809 459306.0048 501584.4124 522833.6491 426608.6477 1.051203128 1.19825615 1.699897172 1.033500332 1.517162809 1.140192032 1.076644853 1.175748347 1.225558019 1 18.70255368 -6.473722165 24.96467013 1.130459611 1.304453424 0.16891954 0.195310191 704.3467351 357709.874 0.067418034 0.059455955 3.36E-07 6.473722165 0.173993813 RAHT(ph)PTPGIYMGRPT(ph)HSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A486_30min_R1 1 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 34 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 RAHT(0.911)PT(0.143)PGIY(0.298)MGRPT(0.348)HS(0.301)GGGGGGGGGGGGGGGGR 51.329 0.0096202 179990000 37190 31185 41887 19836 57202 43830 55057 56769 40013 60583 TRUE FALSE FALSE 34583.17305 28713.78703 58106.76817 46179.21046 50027.19177 38422.70023 41281.15627 43843.93796 43481.35906 45412.62247 0.761532173 0.632286476 1.279529017 1.016880505 1.101614244 0.846079749 0.909023836 0.965457082 0.957472982 1 15.47080573 -4.731604258 24.99999944 1.002401118 0.696908989 0.542047333 0.114782454 162.4532806 136123.604 0.030185146 0.079839372 1.86E-05 4.731604258 -0.305492129 RAHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A485_30min_R1 15 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 34 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RAHT(0.998)PT(0.002)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.99)PT(0.01)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.976)PT(0.024)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.728)PT(0.126)PGIY(0.113)MGRPT(0.028)HS(0.005)GGGGGGGGGGGGGGGGR;RAHT(0.999)PT(0.001)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.991)PT(0.009)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.979)PT(0.021)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.978)PT(0.022)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.985)PT(0.014)PGIYMGRPT(0.001)HSGGGGGGGGGGGGGGGGR;RAHT(0.979)PT(0.021)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.995)PT(0.005)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.956)PT(0.044)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.987)PT(0.013)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.826)PT(0.055)PGIY(0.05)MGRPT(0.055)HS(0.015)GGGGGGGGGGGGGGGGR;RAHT(0.994)PT(0.006)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ;;;;;;;;;;;;;; 323.25 1.79E-110 73988479000 1447175.8 1912830.3 1764039 1191709.6 2259389 1788688.9 1965390.9 2365223 1528809.7 1540822.4 TRUE FALSE FALSE 1769095.064 2136519.164 2416630.434 1256809.678 2034436.298 1882341.885 1545469.078 1785148.351 1835627.784 1156723.732 1.529401545 1.847043598 2.089202777 1.086525367 1.758791871 1.62730463 1.336074497 1.543279783 1.586919791 1 20.14161291 -11.6651858 0.144436033 7.68E-13 1.860235596 0.362253632 0.251592528 67.76979211 1.138549613 23.56367496 1.65320415 2.16E-12 11.6651858 1.860235596 RAHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A486_30min_R1 13 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 34 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RAHT(0.994)PT(0.006)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.989)PT(0.011)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.986)PT(0.014)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.987)PT(0.013)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.995)PT(0.005)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.988)PT(0.012)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.973)PT(0.025)PGIYMGRPT(0.002)HSGGGGGGGGGGGGGGGGR;RAHT(0.996)PT(0.004)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.984)PT(0.016)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.992)PT(0.008)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.996)PT(0.004)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;RAHT(0.971)PT(0.027)PGIY(0.001)MGRPT(0.001)HSGGGGGGGGGGGGGGGGR;RAHT(0.989)PT(0.011)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ;;;;;;;;;;;; 260.02 3.25E-64 42555424000 1621751.3 1596455 1825855.2 395246.3 2178464 1434451.3 1566382 1858150.9 1383913.9 1526358.6 TRUE FALSE FALSE 1508074.909 1469946.092 2532875.232 920153.361 1905220.732 1257483.283 1174456.656 1435090.503 1503872.671 1144148.472 1.318076234 1.284751174 2.213764467 0.804225486 1.665186625 1.099056035 1.02648973 1.254286956 1.314403426 1 20.12584285 -5.289276232 24.99691428 1.188998561 1.573453191 0.280245862 0.319934183 1014.017988 910564.7731 0.088093956 0.130695094 5.14E-06 5.289276232 0.38445463 RAHTPTPGIYMGRPT(ph)HSGGGGGGGGGGGGGGGGR ddPTM_HeLa_A485_30min_R1 1 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 34 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RAHT(0.055)PT(0.016)PGIY(0.014)MGRPT(0.458)HS(0.458)GGGGGGGGGGGGGGGGR 65.938 0.0044405 1228500000 219450 343790 322780 195750 381360 321310 382510 440270 276980 274610 TRUE FALSE FALSE 268265.8954 383993.2499 442189.754 206443.3268 343390.4594 338133.2948 300783.6137 332293.0922 332567.3454 206154.7808 1.301283891 1.862645379 2.144940574 1.001399657 1.665692437 1.640191382 1.459018377 1.611862169 1.613192496 1 17.65336839 -11.59615729 0.358728135 1.82E-11 1.62125021 0.267996785 0.29022047 93.17775499 3.662147202 72.74719865 0.220378359 2.53E-12 11.59615729 1.62125021 RAKEGS(ph)SRGR ddPTM_HeLa_A485_30min_R1 2 RAKEGSSRGR 10 3 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 RAKEGS(0.993)S(0.007)RGR;RAKEGS(0.966)S(0.034)RGR ; 67.207 0.016522 699670000 143148 229940 213940 147853 276610 203168 255410 323890 200029 197847 TRUE FALSE FALSE 174990.7787 256829.4828 293085.3088 155929.835 249069.7372 213805.5623 200839.567 244455.4697 240172.9855 148527.384 1.178171823 1.7291726 1.973274563 1.049838964 1.676928055 1.439502646 1.352205644 1.645861275 1.617028315 1 17.18036942 -10.04208071 4.218653202 0.99995373 1.525080453 0.263984136 0.259237537 170450097 321739481.8 112830.5336 0.063231514 9.08E-11 10.04208071 0.525126723 RAKEGS(ph)SRGR ddPTM_HeLa_A486_30min_R1 3 RAKEGSSRGR 10 3 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 RAKEGS(0.966)S(0.034)RGR;RAKEGS(0.994)S(0.006)RGR;RAKEGS(0.971)S(0.029)RGR ;; 65.719 0.0063907 573720000 220679 230916 207188 86709 311142 204817 247337 275580 180894 236929 TRUE FALSE FALSE 205210.5417 212617.3752 287416.7423 201862.934 272115.6691 179548.761 185450.6665 212836.4499 196574.0376 177600.4363 1.155461924 1.197166965 1.618333538 1.136612828 1.532179058 1.01097027 1.044201639 1.19840049 1.106833078 1 17.4382756 -6.283153407 24.81256657 1.08273865 1.326187593 0.407680271 0.153932986 796.1384312 909742.218 0.053254296 0.047007689 5.21E-07 6.283153407 0.243448944 RAKS(ph)PT(ph)PDGSER ddPTM_HeLa_A485_30min_R1 2 RAKSPTPDGSER 12 2 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 RAKS(1)PT(0.99)PDGS(0.01)ER;RAKS(0.999)PT(0.897)PDGS(0.104)ER ; 60.474 0.023903 689910000 567590 860470 540050 929340 1125240 1000770 1570730 2193170 790610 1479410 TRUE FALSE FALSE 693848.4373 961094.4814 739836.9684 980107.491 1013207.155 1053168.77 1235130.704 1655291.619 949278.1751 1110620.314 0.624739552 0.865367281 0.666147521 0.882486552 0.912289414 0.948270761 1.112108872 1.490420802 0.854727906 1 20.08293426 -6.139815341 1.111419432 1.148656177 0.737702692 0.466906081 0.167670925 0.403652268 1.04630726 0.082410687 0.083454648 7.25E-07 6.139815341 -0.410953486 RAKS(ph)PT(ph)PDGSER ddPTM_HeLa_A486_30min_R1 1 RAKSPTPDGSER 12 2 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 RAKS(1)PT(0.83)PDGS(0.17)ER 72.898 0.0086377 107200000 218230 115800 141910 219070 222550 238790 356160 314840 153220 367110 TRUE FALSE FALSE 202933.2039 106623.5863 196861.3525 510006.0312 194635.7038 209330.5176 267045.0009 243157.8049 166501.233 275183.2665 0.737447471 0.387463917 0.715382716 1.853332282 0.707294838 0.760694937 0.970426016 0.883621333 0.605055805 1 18.07003322 -5.008590447 24.96093309 0.97046259 0.559697472 0.203792983 0.331045929 621.1282459 1804806.588 0.089613129 0.173013534 9.80E-06 5.008590447 -0.410765119 RAKS(ph)PTPDGS(ph)ER ddPTM_HeLa_A485_30min_R1 1 RAKSPTPDGSER 12 2 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 RAKS(0.995)PT(0.179)PDGS(0.826)ER 90.706 0.0077028 116160000 125580 198980 125310 224920 270660 225180 366820 515400 181020 352750 TRUE FALSE FALSE 153514.8378 222248.9801 171667.3836 237206.8101 243712.1401 236970.0766 288445.9104 388997.3419 217349.0536 264815.9169 0.579703968 0.83925839 0.648251758 0.895742268 0.920307748 0.894848313 1.089231772 1.468934898 0.820755248 1 18.01463031 -5.9329178 0.86729303 1.122834271 0.683889542 0.457119866 0.171759534 0.522369973 0.863757004 0.093453725 0.125116896 1.17E-06 5.9329178 -0.43894473 RALAQYLLFLR ddPTM_HeLa_A485_30min_R1 2 RALAQYLLFLR 11 1 F5H4N4;Q9NR77 F5H4N4 PXMP2 Peroxisomal membrane protein 2 0 0 ; ; 169.93 2.33E-06 25058000 13152.8 16862.1 12218.8 12696.6 12065 13168.9 20715.2 24512 9160.6 21667.5 FALSE FALSE TRUE 16078.59498 18833.97591 16739.04259 13390.18311 10863.76624 13858.40324 16289.22829 18500.39357 10999.04839 16266.19101 0.98846712 1.157860245 1.029069594 0.823191065 0.667874011 0.851975932 1.001416268 1.137352534 0.67619078 1 13.98958884 -5.12030384 5.040037073 0.881199242 1.077427645 0.253131176 0.141652934 0.320107895 11.80351323 0.040694463 0.072831565 7.58E-06 5.12030384 0.196228404 RALAQYLLFLR ddPTM_HeLa_A486_30min_R1 1 RALAQYLLFLR 11 1 F5H4N4;Q9NR77 F5H4N4 PXMP2 Peroxisomal membrane protein 2 0 0 94.297 0.0088583 7451300 4442.8 5404.8 3859.4 2118.4 6267.4 4057.1 5646.7 4661.4 3779.3 6910.6 FALSE FALSE TRUE 4131.382663 4976.503964 5353.863038 4931.742258 5481.284251 3556.576252 4233.835935 3600.100978 4106.892767 5180.14078 0.797542545 0.960688942 1.033536204 0.952047921 1.058134225 0.686579072 0.817320632 0.694981301 0.792814895 1 12.33877559 -6.26148568 25 0.780461852 0.96400681 0.373377325 0.10362807 4.027810854 2174330.459 0.034006537 0.031942869 5.48E-07 6.26148568 0.183544958 RALASSVPRDVMQNHLLQMLCLVAMEK ddPTM_HeLa_A485_30min_R1 1 RALASSVPRDVMQNHLLQMLCLVAMEK 27 2 P11413-2 P11413-2 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 40.142 0.027259 15875000 11272 7362.3 8836.1 16014 16870 9809.7 16060 12341 10439 25661 FALSE FALSE TRUE 13779.41751 8223.256942 12104.94109 16888.80427 15190.36357 10323.32072 12628.6498 9314.3504 12534.01155 19264.18496 0.715286816 0.426867628 0.628365078 0.876694462 0.788528744 0.53588152 0.655550693 0.483506072 0.65063804 1 14.23363353 -10.66845054 2.463728892 1.055202758 0.637627974 0.413745733 0.128474447 10700369.62 8399188.207 3707396.733 0.035778366 2.15E-11 10.66845054 -0.417574785 RALERRISEMEEELK ddPTM_HeLa_A486_30min_R1 1 RALERRISEMEEELK 15 3 O14974-5;O14974-4;O14974-3;O14974-2;O14974 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 0 0 57.136 0.037981 10101000 4623.2 9925.4 8195.8 5373.3 13246 13886 15285 13521 9782.8 10606 FALSE FALSE TRUE 4299.137554 9138.875156 11369.43325 12509.31395 11584.56317 12172.8865 11460.53133 10442.56346 10630.78098 7950.188567 0.540759193 1.149516779 1.43008347 1.573461289 1.457143195 1.531144375 1.441542076 1.31349884 1.337173438 1 12.95677336 -4.310229976 2.310705585 1.412849576 0.380104552 0.735946452 0.152038862 0.240964645 1.661551812 0.038768314 0.481782723 4.90E-05 4.310229976 -1.032745024 RALIVLAHSER ddPTM_HeLa_A485_30min_R1 1 RALIVLAHSER 11 1 B4DLR8;P15559-3;P15559-2;P15559;H3BRK3 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 130.1 0.00038401 14160000 6647.7 9891.1 10637 8596.5 11718 10012 10249 11467 8713.4 9996.7 FALSE FALSE TRUE 8126.457931 11047.7781 14572.06894 9066.105028 10551.31478 10536.21284 8059.217423 8654.70027 10462.09946 7504.706666 1.082848177 1.472113248 1.941723986 1.208055882 1.405959652 1.403947324 1.073888399 1.153236316 1.394071737 1 12.87357997 -6.677231472 6.364892282 1.168886993 1.43763537 0.239340414 0.228888546 0.328255308 19.96105897 0.090815342 0.069676134 2.10E-07 6.677231472 0.268748377 RALIVLAHSER ddPTM_HeLa_A486_30min_R1 1 RALIVLAHSER 11 1 B4DLR8;P15559-3;P15559-2;P15559;H3BRK3 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 0 0 124.12 0.00051339 10317000 10095 8389.7 6967.9 3658.2 12223 7779.9 11625 8669.3 6275.5 10737 FALSE FALSE TRUE 9387.392631 7724.869617 9666.057487 8516.474475 10689.87737 6820.095038 8716.302043 6695.489639 6819.465393 8048.385314 1.166369683 0.959803652 1.200993381 1.058159388 1.32820149 0.847386746 1.082987668 0.831904709 0.847308513 1 12.97448366 -6.284821926 24.99837711 0.921478449 1.131085539 0.480731079 0.11441486 736.3324861 787213.4921 0.039353426 0.034727946 5.19E-07 6.284821926 0.20960709 RALLETAS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RALLETASPR 10 1 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 0 RALLET(0.022)AS(0.978)PR;RALLET(0.008)AS(0.992)PR ; 103.85 0.00064779 885260000 664710 1024590 987960 562580 1077450 946830 1069580 1195510 852540 821950 TRUE FALSE FALSE 812572.4463 1144406.888 1353447.516 593312.3209 970175.2948 996404.5547 841055.4953 902309.298 1023636.958 617052.9919 1.31686007 1.854633075 2.193405646 0.961525718 1.572272248 1.614779554 1.363019881 1.462288183 1.658912559 1 19.23503487 -12.0671927 0.180646783 1.50E-12 1.696835928 0.218179659 0.311851192 95.66334382 1.738800606 38.42576209 1.071039117 8.57E-13 12.0671927 1.696835928 RALLETAS(ph)PR ddPTM_HeLa_A486_30min_R1 3 RALLETASPR 10 1 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 0 RALLET(0.006)AS(0.994)PR;RALLET(0.003)AS(0.997)PR;RALLET(0.013)AS(0.987)PR ;; 125.53 6.61E-05 890160000 1039350 1127610 1063000 293903 1392220 904930 1046000 1094230 895010 958430 TRUE FALSE FALSE 966496.9322 1038254.077 1474622.068 684221.037 1217594.786 793288.9373 784279.7365 845097.7159 972590.1874 718432.8897 1.34528492 1.445165014 2.052553675 0.952379891 1.694792657 1.104193514 1.091653442 1.17630711 1.353766234 1 19.45449387 -6.278118368 24.54216276 1.152857562 1.495590396 0.295726017 0.272120477 879.5706484 1294232.808 0.09355942 0.082749391 5.27E-07 6.278118368 0.342732834 RALLSLRS(ph)PK ddPTM_HeLa_A485_30min_R1 3 RALLSLRSPK 10 2 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 RALLSLRS(1)PK;RALLS(0.332)LRS(0.668)PK;RALLSLRS(1)PK ;; 128.57 4.12E-05 1336440000 1019590 1109540 738700 1403600 1588300 1425260 2186660 2517050 1011770 2012270 TRUE FALSE FALSE 1246394.278 1239291.051 1011975.87 1480275.114 1430163.275 1499884.41 1719462.228 1899739.541 1214822.958 1510648.122 0.825072537 0.820370431 0.669895163 0.979894055 0.946721645 0.992874772 1.138228157 1.257565884 0.804173348 1 20.52673622 -5.660789103 1.513344232 1.057436803 0.778658674 0.439536477 0.12232414 0.346828749 1.641721067 0.044103731 0.066252902 2.18E-06 5.660789103 -0.278778129 RALLSLRS(ph)PK ddPTM_HeLa_A486_30min_R1 1 RALLSLRSPK 10 2 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 RALLS(0.026)LRS(0.974)PK 53.754 0.029814 861050000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RALS(ph)PLPTR ddPTM_HeLa_A485_30min_R1 4 RALSPLPTR 9 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 RALS(1)PLPTR;RALS(1)PLPTR;RALS(1)PLPTR;RALS(1)PLPTR ;;; 142.77 6.74E-05 1180220000 159541 230138 214897 140293 246227 213367 248366 313974 214434 235562 TRUE FALSE FALSE 195030.345 257050.6372 294396.3429 147956.8513 221711.7753 224538.5662 195300.5751 236971.3842 257468.9369 176840.7286 1.102858751 1.453571466 1.664754184 0.83666728 1.253737061 1.269722015 1.10438685 1.340027188 1.45593687 1 17.43209106 -5.24207924 24.99958742 1.19788766 1.411712402 0.195944665 0.208477211 1485.635839 1918386.561 0.056850113 0.098281617 5.73E-06 5.24207924 0.213824742 RALS(ph)PLPTR ddPTM_HeLa_A486_30min_R1 3 RALSPLPTR 9 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 RALS(1)PLPTR;RALS(1)PLPTR;RALS(1)PLPTR ;; 118.73 0.00030713 856820000 152935 197776 213963 60777 243438 150326 188927 185371 131451 169225 TRUE FALSE FALSE 142215.0463 182103.5095 296815.2037 141491.9275 212903.7361 131780.3065 141655.4663 143166.0699 142845.2785 126849.9585 1.121128047 1.435581939 2.339892004 1.115427464 1.678390269 1.038867557 1.116716694 1.12862528 1.126096375 1 16.95276352 -6.266993002 24.45517166 1.092266207 1.553453369 0.332305304 0.322674655 423.0822914 1863020.488 0.112927864 0.102427008 5.41E-07 6.266993002 0.461187162 RALS(ph)SAGPIPIRPPIVPVK ddPTM_HeLa_A485_30min_R1 2 RALSSAGPIPIRPPIVPVK 19 2 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RALS(0.948)S(0.052)AGPIPIRPPIVPVK;RALS(0.884)S(0.116)AGPIPIRPPIVPVK ; 172.75 3.89E-13 1280520000 816170 767620 652930 882790 1066090 854360 1192850 1098820 839630 1171210 TRUE FALSE FALSE 997724.2007 857386.4816 894475.9777 931014.5824 959946.3363 899092.9685 937987.8528 829332.6721 1008136.039 879248.9015 1.13474603 0.975135118 1.017318277 1.058874888 1.091779967 1.02256934 1.066805828 0.943228556 1.146587772 1 19.7459121 -9.863328978 8.745205295 0.99999898 1.045495568 0.052049136 0.061391664 0 0 0.055373135 0.013429958 1.37E-10 9.863328978 0.045496588 RALS(ph)SAGPIPIRPPIVPVK ddPTM_HeLa_A486_30min_R1 1 RALSSAGPIPIRPPIVPVK 19 2 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RALS(0.895)S(0.105)AGPIPIRPPIVPVK 174.7 2.56E-13 359150000 546800 533280 372200 205090 600040 571290 668800 678440 407750 539730 TRUE FALSE FALSE 508472.1437 491020.9506 516325.8079 477459.8847 524777.388 500810.0483 501459.1662 523974.0222 443094.0983 404578.0949 1.25679603 1.21366173 1.276208016 1.180142698 1.297097877 1.237857547 1.239461979 1.295112189 1.095200417 1 18.62605868 -7.941843588 4.154655449 1.001376805 1.247291658 0.852970349 0.034557727 0.059987125 2.06224079 0.031221879 0.008206946 1.14E-08 7.941843588 0.245914852 RALS(ph)SDSILSPAPDAR ddPTM_HeLa_A485_30min_R1 6 RALSSDSILSPAPDAR 16 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RALS(0.851)S(0.059)DS(0.089)ILS(0.001)PAPDAR;RALS(0.965)S(0.035)DS(0.001)ILSPAPDAR;RALS(0.771)S(0.184)DS(0.044)ILSPAPDAR;RALS(0.746)S(0.048)DS(0.182)ILS(0.023)PAPDAR;RALS(0.763)S(0.06)DS(0.172)ILS(0.005)PAPDAR;RALS(0.601)S(0.393)DS(0.006)ILSPAPDAR ;;;;; 244.91 6.72E-42 7481204000 1064800 1767515 1640601 921065 2115874 1687103 1969612 2623883 1476907 1488683 TRUE FALSE FALSE 1301661.086 1974210.504 2247527.581 971380.4487 1905210.155 1775437.104 1548788.306 1980371.58 1773308.688 1117581.725 1.164712215 1.766502135 2.01106329 0.869180684 1.704761372 1.588641854 1.385838969 1.772014999 1.58673737 1 20.0919489 -10.18811631 4.113762326 0.999754294 1.548422411 0.210973691 0.312114197 41045376.01 33884433.04 81601.50744 0.073448944 6.48E-11 10.18811631 0.548668116 RALS(ph)SDSILSPAPDAR ddPTM_HeLa_A486_30min_R1 5 RALSSDSILSPAPDAR 16 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RALS(0.745)S(0.252)DS(0.003)ILSPAPDAR;RALS(0.9)S(0.1)DSILSPAPDAR;RALS(0.997)S(0.003)DSILSPAPDAR;RALS(0.786)S(0.199)DS(0.012)ILS(0.003)PAPDAR;RALS(0.704)S(0.274)DS(0.022)ILSPAPDAR ;;;; 250.81 1.46E-42 5129430000 1287430 1241299 1393950 526471 2036180 1336370 1712470 1959530 1262659 1599360 TRUE FALSE FALSE 1197187.805 1142933.947 1933724.771 1225651.094 1780783.318 1171502.257 1283991.893 1513387.795 1372107.299 1198869.846 0.998596978 0.953342809 1.612956384 1.022338746 1.485385026 0.977172176 1.071001909 1.262345367 1.144500634 1 20.19324361 RALSS(ph)DSILSPAPDAR ddPTM_HeLa_A485_30min_R1 2 RALSSDSILSPAPDAR 16 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RALS(0.422)S(0.57)DS(0.008)ILSPAPDAR;RALS(0.367)S(0.627)DS(0.006)ILSPAPDAR ; 116.04 6.95E-05 3192270000 245720 343600 359920 255760 426770 307400 366130 379890 323870 386920 TRUE FALSE FALSE 300379.5663 383781.0311 493069.3855 269731.5212 384279.2803 323494.9887 287903.3345 286721.3819 388867.7383 290467.9647 1.034122873 1.321250801 1.697500053 0.928610222 1.322966134 1.11370281 0.991170695 0.987101563 1.338762912 1 18.14801953 -5.292637344 24.9997319 1.102578528 1.347987542 0.255586363 0.198090007 931.143989 746147.7881 0.055851136 0.082850689 5.10E-06 5.292637344 0.245409014 RALVEFESNPEETREPGS(ph)PPSVQR ddPTM_HeLa_A485_30min_R1 5 RALVEFESNPEETREPGSPPSVQR 24 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 RALVEFESNPEET(0.001)REPGS(0.999)PPSVQR;RALVEFESNPEETREPGS(0.997)PPS(0.003)VQR;RALVEFESNPEET(0.016)REPGS(0.866)PPS(0.118)VQR;RALVEFESNPEETREPGS(1)PPSVQR;RALVEFESNPEETREPGS(0.999)PPSVQR ;;;; 206.49 4.57E-29 7332120000 509883 897027 710248 417594 961044 889807 1025225 1492880 622583 609378 TRUE FALSE FALSE 623304.7143 1001926.505 972998.2911 440406.1028 865359.0849 936395.9186 806177.3034 1126748.839 747529.6974 457471.2794 1.36250021 2.19014078 2.126905742 0.962696726 1.891614018 2.046895534 1.762246812 2.462993613 1.634047275 1 18.80332165 RALVEFESNPEETREPGS(ph)PPSVQR ddPTM_HeLa_A486_30min_R1 2 RALVEFESNPEETREPGSPPSVQR 24 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 RALVEFESNPEETREPGS(0.999)PPS(0.001)VQR;RALVEFES(0.001)NPEET(0.04)REPGS(0.908)PPS(0.052)VQR ; 202.3 6.71E-29 2122960000 534790 574080 363460 133404 627630 502510 496900 557650 471570 336250 TRUE FALSE FALSE 497303.9827 528587.81 504201.4458 310571.2539 548906.793 440515.4253 372570.3643 430685.2684 512446.0673 252050.8114 1.973030676 2.097147822 2.000396043 1.232177164 2.177762452 1.747724687 1.478155783 1.708723991 2.0331062 1 17.94335507 -11.32955196 0.239515801 2.67E-19 1.931574255 0.430723989 0.282517393 39.38674369 1.224366782 22.50992317 0.494596068 4.68E-12 11.32955196 1.931574255 RAMELLK ddPTM_HeLa_A485_30min_R1 1 RAMELLK 7 1 Q9Y3U8;J3QSB5 Q9Y3U8 RPL36 60S ribosomal protein L36 0 0 57.598 0.013313 0 156100 257040 159640 220700 314630 320770 358060 424700 269260 355320 FALSE FALSE TRUE 190823.9065 287098.592 218697.4792 232756.2822 283304.3325 337565.0212 281557.5559 320541.6591 323298.0122 266745.2632 0.715378801 1.076302494 0.8198739 0.872578877 1.062078213 1.265495841 1.055529731 1.201677043 1.212010322 1 18.02510313 -5.889434004 3.852193831 1.15494889 0.882030455 0.580674096 0.110401417 0.158904275 4.433407871 0.033545973 0.038601603 1.29E-06 5.889434004 -0.272918435 RAPAPPPPQPPPPS(ph)PLIPNR ddPTM_HeLa_A485_30min_R1 2 RAPAPPPPQPPPPSPLIPNR 20 1 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 RAPAPPPPQPPPPS(1)PLIPNR;RAPAPPPPQPPPPS(1)PLIPNR ; 179.38 4.40E-19 2777900000 353930 433720 417320 407930 403540 360870 376000 338460 408880 497750 TRUE FALSE FALSE 432660.5075 484439.7811 571704.0341 430214.183 363362.1407 379764.5952 295664.5284 255452.1543 490938.4655 373670.0854 1.15786766 1.296437152 1.529970036 1.151320911 0.972414316 1.016309868 0.791244844 0.683630198 1.313828654 1 18.51140555 -5.614906506 3.244891934 0.939422465 1.327907721 0.459182854 0.176555809 0.208885348 4.383449226 0.054681595 0.073720078 2.43E-06 5.614906506 0.388485255 RAPAPPPPQPPPPS(ph)PLIPNR ddPTM_HeLa_A486_30min_R1 2 RAPAPPPPQPPPPSPLIPNR 20 1 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 RAPAPPPPQPPPPS(1)PLIPNR;RAPAPPPPQPPPPS(1)PLIPNR ; 196.28 1.63E-20 3145400000 295420 324660 252799 93376 285830 286280 301140 263640 263030 310760 TRUE FALSE FALSE 274712.5836 298932.7592 350689.543 217384.047 249978.5361 250961.6843 225791.5869 203614.9272 285829.6522 232943.6733 1.179309056 1.283283444 1.505469275 0.93320434 1.073128678 1.077349218 0.969296928 0.874095116 1.227033334 1 17.82962162 -5.273613862 24.99582829 1.019008028 1.318746884 0.581829314 0.116776561 504.2523197 1035295.853 0.032528207 0.048652282 5.33E-06 5.273613862 0.299738857 RAPAPPPPQPPPPS(ph)PLIPNRTEDKEENR ddPTM_HeLa_A486_30min_R1 1 RAPAPPPPQPPPPSPLIPNRTEDKEENR 28 3 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 RAPAPPPPQPPPPS(0.954)PLIPNRT(0.046)EDKEENR 99.866 0.0064633 292440000 61887 60112 41867 26218 63081 60343 78309 82820 45517 74867 TRUE FALSE FALSE 57549.04088 55348.5062 58079.02364 61036.82898 55168.79277 52898.49418 58715.25993 63963.69395 49462.45021 56119.8159 1.025467386 0.986256019 1.034911158 1.087616344 0.983053702 0.942599211 1.046248264 1.139770203 0.881372282 1 15.77622266 RAPFDLFENK ddPTM_HeLa_A485_30min_R1 1 RAPFDLFENK 10 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 128.81 0.00022005 87699000 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 RAPFDLFENKK ddPTM_HeLa_A485_30min_R1 2 RAPFDLFENKK 11 2 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 102.87 0.00081067 196931000 369030 386140 271090 726580 600010 389260 622830 572710 363500 888260 FALSE FALSE TRUE 451119.4504 431295.714 371377.472 766271.2256 540270.8976 409641.0517 489757.2824 432251.9745 436451.1158 666833.1292 0.676510255 0.646782074 0.556927147 1.14911991 0.810204044 0.614308189 0.734452535 0.648216106 0.654513246 1 19.34696626 RAPFDLFENR ddPTM_HeLa_A485_30min_R1 2 RAPFDLFENR 10 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 167.18 9.21E-07 564550000 403640 542990 563370 421940 639730 470230 530610 525940 526110 557630 FALSE FALSE TRUE 493428.3255 606487.9571 771784.0068 444989.5138 576036.235 494850.5157 417240.8388 396952.3904 631695.4512 418623.1034 1.178693487 1.44876848 1.843624971 1.062983648 1.376025906 1.182090792 0.996698069 0.948233356 1.508983728 1 18.67529241 -5.299725993 24.99428058 1.155337246 1.486203351 0.323079545 0.223364365 637.5963971 416234.5716 0.063288508 0.09387432 5.02E-06 5.299725993 0.330866105 RAPFDLFENR ddPTM_HeLa_A486_30min_R1 2 RAPFDLFENR 10 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 169.52 7.31E-07 661620000 545790 679020 580260 240610 823590 590160 673360 672180 549830 607490 FALSE FALSE TRUE 507532.9395 625211.9823 804952.2119 560152.2398 720287.6625 517352.0595 504878.2059 519139.2876 597489.7071 455370.5499 1.114549326 1.372974125 1.767686145 1.230102034 1.581761628 1.136112249 1.108719495 1.140037026 1.312095627 1 18.79668147 -6.283654571 24.18570046 1.146228055 1.420665668 0.36259915 0.181414879 608.4136089 662377.8606 0.063584386 0.056125952 5.20E-07 6.283654571 0.274437613 RAPQASGPS(ph)TPGYR ddPTM_HeLa_A486_30min_R1 1 RAPQASGPSTPGYR 14 1 Q2QGD7-2;Q2QGD7 Q2QGD7-2 ZXDC Zinc finger protein ZXDC 1 0 RAPQASGPS(0.5)T(0.5)PGYR 76.82 0.0039434 122160000 32628 40748 50152 7828.8 46785 33729 30582 35653 31836 19257 TRUE FALSE FALSE 30340.94569 37518.98008 69572.19752 18225.84205 40916.78905 29567.85891 22930.06014 27535.5902 34595.57011 14434.92186 2.101912708 2.599181377 4.819714177 1.262621455 2.834569487 2.048356008 1.588512938 1.907567666 2.396657942 1 13.81727568 -5.308142413 24.99995878 1.937244352 3.116169021 0.347588095 0.817477918 484.8354099 259529.5693 0.227686918 0.337715214 4.92E-06 5.308142413 1.178924669 RAPS(ph)PDGFSPYSPEETNR ddPTM_HeLa_A486_30min_R1 2 RAPSPDGFSPYSPEETNR 18 1 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 RAPS(1)PDGFSPYSPEETNR;RAPS(1)PDGFSPYSPEETNR ; 112.88 4.80E-06 0 93064 98136 91714 33929.3 122340 91869 103039 121148 87239 101188 TRUE FALSE FALSE 86540.69418 90359.34595 127228.117 78989.12509 106994.9764 80535.13684 77257.55236 93565.24504 94800.94676 75849.86618 1.140947223 1.191292095 1.677367719 1.041387798 1.41061523 1.061770322 1.018558849 1.233558472 1.249849888 1 16.21085901 -6.273365566 24.86100851 1.121458118 1.294159881 0.202305604 0.177852086 1257.036864 2620376.795 0.062220147 0.055298251 5.33E-07 6.273365566 0.172701763 RAPS(ph)PGAYK ddPTM_HeLa_A485_30min_R1 6 RAPSPGAYK 9 1 P54259 P54259 ATN1 Atrophin-1 1 0 RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK ;;;;; 128.85 0.0001518 8579150000 5113750 5682910 4931940 6068470 6918910 6334150 8104280 8795410 5532110 7836750 TRUE FALSE FALSE 6251286.045 6347476.89 6756469.841 6399975.15 6230039.027 6665796.3 6372734.372 6638321.907 6642353.733 5883192.45 1.062566982 1.078917092 1.148435972 1.087840523 1.058955504 1.13302367 1.083210251 1.12835369 1.129039002 1 22.4881678 -5.404905043 19.03457948 1.09437116 1.098735318 0 0.042836288 58.782807 9279.721525 0.011863142 0.017595869 3.94E-06 5.404905043 0.004364158 RAPS(ph)PGAYK ddPTM_HeLa_A486_30min_R1 6 RAPSPGAYK 9 1 P54259 P54259 ATN1 Atrophin-1 1 0 RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK;RAPS(1)PGAYK ;;;;; 117.79 0.0003335 8147380000 5042190 5134680 3420860 2025673 5614930 5412930 6302880 6069240 4067610 6400330 TRUE FALSE FALSE 4688758.519 4727789.257 4745508.606 4715869.116 4910653.122 4745137.731 4725832.759 4687406.543 4420193.71 4797645.709 0.977304037 0.985439431 0.989132773 0.98295485 1.023554764 0.98905547 0.985031627 0.977022237 0.921325579 1 22.19389519 -9.914255481 4.442775351 1.000000253 0.983078043 0.048617597 0.0236718 32269529.9 5.227563944 83.83561315 0.005881637 1.22E-10 9.914255481 -0.016922211 RAPS(ph)PLPK ddPTM_HeLa_A485_30min_R1 5 RAPSPLPK 8 1 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 0 RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK ;;;; 81.525 0.0047004 15167920000 7438830 7629260 6706940 9377740 9305810 8747820 11882800 12611900 7537050 11799900 TRUE FALSE FALSE 9093572.07 8521435.591 9188116.205 9890022.191 8379290.882 9205842.328 9343942.706 9518811.75 9049666.801 8858402.091 1.026547675 0.961960803 1.037220495 1.11645668 0.945914488 1.039221547 1.054811309 1.074551782 1.021591333 1 23.07861505 -6.498421645 24.86794165 1.044389158 1.018253727 0.037850024 0.046885765 2202.468743 2239470.994 0.01683958 0.014768999 3.17E-07 6.498421645 -0.026135431 RAPS(ph)PLPK ddPTM_HeLa_A486_30min_R1 6 RAPSPLPK 8 1 Q9BSL1 Q9BSL1 UBAC1 Ubiquitin-associated domain-containing protein 1 1 0 RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK;RAPS(1)PLPK ;;;;; 117.25 0.00052782 17663760000 13672600 14388960 8871420 5477230 14376140 14189260 16825100 16251140 11039350 17286600 TRUE FALSE FALSE 12714221.35 13248726.41 12306671.41 12751268.24 12572950.47 12438733.37 12615282.02 12551110.18 11996249.75 12957922.84 0.981192858 1.022442143 0.949741063 0.984051873 0.97029058 0.959932662 0.973557427 0.968605102 0.925784934 1 23.62733114 -4.765561124 24.99995938 0.966154592 1.001817501 0.315332215 0.020814221 104.7841337 635569.5311 0.005117832 0.011282529 1.72E-05 4.765561124 0.035662909 RAPS(ph)SPVAKPGPVK ddPTM_HeLa_A485_30min_R1 1 RAPSSPVAKPGPVK 14 2 Q9GZR2;A0A0C4DG31;Q9GZR2-2 Q9GZR2 REXO4 RNA exonuclease 4 1 0 RAPS(0.5)S(0.5)PVAKPGPVK 99.392 0.00052447 2542400000 2190400 2341700 1510200 2413500 2767100 2907200 3739900 4238100 1988700 3231500 TRUE FALSE FALSE 2677646.923 2615541.445 2068885.825 2545343.394 2491597.808 3059416.497 2940839.813 3198699.33 2387813.849 2425946.521 1.103753483 1.078152969 0.852815924 1.049216614 1.027062133 1.261122811 1.212244288 1.318536621 0.984281322 1 21.21011632 -6.185347933 7.930680369 1.178534196 1.016754448 0.23273676 0.116840078 0.393636506 37.29382761 0.038038978 0.038039945 6.53E-07 6.185347933 -0.161779748 RAPS(ph)TSPSFEGTQETYTVAHEENVR ddPTM_HeLa_A486_30min_R1 1 RAPSTSPSFEGTQETYTVAHEENVR 25 1 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 0 RAPS(0.596)T(0.198)S(0.198)PS(0.007)FEGT(0.001)QETYTVAHEENVR 70.109 0.0060309 196420000 61208 63485 42998 34022 58534 72925 87621 79411 61047 95965 TRUE FALSE FALSE 56917.63528 58454.21739 59647.97713 79204.93538 51192.11991 63928.25495 65697.29904 61330.84883 66338.60311 71934.73937 0.79123989 0.81260067 0.829195708 1.101066551 0.7116467 0.888697944 0.913290291 0.852590131 0.922205372 1 16.13440104 -13.99961654 0.018506583 2.095049132 1.65E-09 0.191260036 0.094439775 7065.55621 9.883161321 737.8953136 421.7735855 1.00E-14 13.99961654 -2.09504913 RAPS(ph)VANVGSHCDLSLK ddPTM_HeLa_A485_30min_R1 3 RAPSVANVGSHCDLSLK 17 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(0.984)VANVGS(0.016)HCDLSLK;RAPS(1)VANVGSHCDLSLK;RAPS(1)VANVGSHCDLSLK ;; 268.98 1.56E-52 47021600000 5159930 3376390 3605610 7349180 4208400 3323740 4708700 2985470 3946240 8458390 TRUE FALSE FALSE 6307738.627 3771229.44 4939475.181 7750647.094 3789396.919 3497765.887 3702647.778 2253278.801 4738214.171 6349869.038 0.993365153 0.593906649 0.77788615 1.220599519 0.596767728 0.550840634 0.583106164 0.354854374 0.746190849 1 22.59829541 -5.902314248 22.9103884 0.59905196 0.87166668 0.240174279 0.216135407 10.27492383 2396.049125 0.065848731 0.074665476 1.25E-06 5.902314248 0.27261472 RAPS(ph)VANVGSHCDLSLK ddPTM_HeLa_A486_30min_R1 7 RAPSVANVGSHCDLSLK 17 1 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(1)VANVGSHCDLSLK;RAPS(1)VANVGSHCDLSLK;RAPS(1)VANVGSHCDLSLK;RAPS(1)VANVGSHCDLSLK;RAPS(0.978)VANVGS(0.022)HCDLSLK;RAPS(1)VANVGSHCDLSLK;RAPS(0.999)VANVGS(0.001)HCDLSLK ;;;;;; 216.38 4.29E-34 86056905000 1428177.5 2156917 1277126 679612 1824803 2177339 2193342 1945924 1916813 2217427 TRUE FALSE FALSE 1328069.632 1985995.042 1771663.39 1582171.082 1595919.192 1908721.052 1644544.633 1502879.584 2082963.894 1662168.846 0.798998029 1.19482148 1.065874501 0.951871457 0.960142645 1.148331625 0.989396857 0.904167821 1.25316023 1 20.66463551 RAPS(ph)VANVGSHCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A485_30min_R1 8 RAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 36 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(0.52)VANVGS(0.464)HCDLS(0.013)LKIPEIS(0.002)IQDMT(0.001)AQVTSPSGK;RAPS(0.942)VANVGS(0.057)HCDLS(0.001)LKIPEISIQDMTAQVTSPSGK;RAPS(0.449)VANVGS(0.397)HCDLS(0.154)LKIPEISIQDMTAQVTSPSGK;RAPS(0.783)VANVGS(0.213)HCDLS(0.001)LKIPEIS(0.004)IQDMTAQVTSPSGK;RAPS(0.53)VANVGS(0.397)HCDLS(0.071)LKIPEIS(0.003)IQDMTAQVTSPSGK;RAPS(0.325)VANVGS(0.325)HCDLS(0.325)LKIPEIS(0.019)IQDMT(0.005)AQVTSPSGK;RAPS(0.838)VANVGS(0.133)HCDLS(0.029)LKIPEISIQDMTAQVTSPSGK;RAPS(0.239)VANVGS(0.239)HCDLS(0.239)LKIPEIS(0.239)IQDMT(0.043)AQVT(0.001)SPSGK ;;;;;;; 284.29 2.24E-79 56195196000 2060033 1894243 1175667.1 2030068 1679832 2101013 2770696 2700059 1511544 2557063 TRUE FALSE FALSE 2518280.234 2115758.241 1610595.284 2140965.474 1512582.028 2211018.792 2178714.165 2037865.297 1814897.016 1919634.253 1.311854188 1.102167372 0.839011536 1.115298641 0.787953239 1.151791696 1.134963164 1.061590401 0.945438962 1 20.87240003 -4.350442945 3.682708335 1.010959534 1.320698043 0.390244471 0.115725633 0.242123707 5.406923762 0.029045618 0.169248523 4.46E-05 4.350442945 0.309738509 RAPS(ph)VANVGSHCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 6 RAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 36 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(0.338)VANVGS(0.3)HCDLS(0.3)LKIPEIS(0.053)IQDMT(0.009)AQVTSPSGK;RAPS(0.879)VANVGS(0.103)HCDLS(0.018)LKIPEISIQDMTAQVTSPSGK;RAPS(1)VANVGSHCDLSLKIPEISIQDMTAQVTSPSGK;RAPS(0.499)VANVGS(0.208)HCDLS(0.208)LKIPEIS(0.062)IQDMT(0.02)AQVT(0.003)S(0.001)PSGK;RAPS(0.85)VANVGS(0.065)HCDLS(0.085)LKIPEISIQDMTAQVTSPSGK;RAPS(0.328)VANVGS(0.328)HCDLS(0.328)LKIPEIS(0.016)IQDMT(0.001)AQVTSPSGK ;;;;; 286.12 1.26E-79 59519080000 3723231 4003446 2448444 1730061 4345778 4543120 5785924 4990121 3786078 5623195 TRUE FALSE FALSE 3462251.734 3686198.359 3396547.088 4027669.44 3800690 3982636.045 4338224.618 3853979.382 4114258.289 4215110.371 0.821390528 0.874520009 0.805802646 0.955531193 0.901682202 0.944847393 1.029207835 0.914324666 0.976073679 1 22.00713898 -5.528466111 0.985680715 0.971993021 0.828486866 0.658321099 0.040706695 0.368376982 0.731635295 0.01706931 0.035733121 2.96E-06 5.528466111 -0.143506155 RAPS(ph)WR ddPTM_HeLa_A485_30min_R1 9 RAPSWR 6 1 A0A2R8Y7R9;Q13136-2;Q13136;M0QZB5;B1APN9;O75335-2;O75335-1;O75335 A0A2R8Y7R9 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 1 0 RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR ;;;;;;;; 67.494 0.017832 8314648000 1362387 1750820 1857514 1148549 1767182 1460186 1633536 2005603 1535158 1576777 TRUE FALSE FALSE 1665445.288 1955563.169 2544685.726 1211291.324 1591235.155 1536639.081 1284517.689 1513725.72 1843250.129 1183715.512 1.406964149 1.652055032 2.149744343 1.023295979 1.344271608 1.298148977 1.085157435 1.278791824 1.557173248 1 20.17489096 -5.27700686 24.9995317 1.240286961 1.727834603 0.505630871 0.230576856 661.0202097 1061518.753 0.064804614 0.096500347 5.28E-06 5.27700686 0.487547642 RAPS(ph)WR ddPTM_HeLa_A486_30min_R1 6 RAPSWR 6 1 A0A2R8Y7R9;Q13136-2;Q13136;M0QZB5;B1APN9;O75335-2;O75335-1;O75335 A0A2R8Y7R9 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 1 0 RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR;RAPS(1)WR ;;;;; 72.968 0.015556 7266130000 1548610 1611270 1317120 464650 1398530 1248400 1469800 1673250 1229670 1293150 TRUE FALSE FALSE 1440060.436 1483587.097 1827144.138 1081728.682 1223113.327 1094385.101 1102040.494 1292287.502 1336258.786 969336.823 1.485614084 1.53051763 1.884942462 1.115947168 1.261804254 1.129003949 1.136901506 1.333166626 1.37852886 1 19.88663853 -5.276659906 24.99223613 1.20528888 1.623374028 0.662861964 0.143596213 480.315399 788680.9869 0.040708404 0.060643882 5.29E-06 5.276659906 0.418085148 RAPSS(ph)PVAKPGPVK ddPTM_HeLa_A486_30min_R1 1 RAPSSPVAKPGPVK 14 2 Q9GZR2;A0A0C4DG31;Q9GZR2-2 Q9GZR2 REXO4 RNA exonuclease 4 1 0 RAPS(0.346)S(0.654)PVAKPGPVK 98.817 0.00034901 7270500000 5400300 4746300 2644700 2291100 5050800 5026100 6416700 6081400 4026500 6619800 TRUE FALSE FALSE 5021766.857 4370185.902 3668798.668 5333796.586 4417281.567 4406030.884 4811173.791 4696797.976 4375520.262 4962158.992 1.012012486 0.880702515 0.739355324 1.074894334 0.890193477 0.887926181 0.96957268 0.946523073 0.881777522 1 22.24253653 -14 0.233592221 1.441694592 0.910154959 0.065905114 0.08584124 486.9784792 4.872268436 101.9660672 0.14375274 1.00E-14 14 -0.531539632 RAPST(ph)SPSFEGTQETYTVAHEENVR ddPTM_HeLa_A486_30min_R1 1 RAPSTSPSFEGTQETYTVAHEENVR 25 1 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 0 RAPS(0.154)T(0.415)S(0.415)PS(0.016)FEGTQETYTVAHEENVR 223.57 3.00E-38 148030000 66274 79168 59604 33567 80695 72550 94636 84409 61900 90820 TRUE FALSE FALSE 61628.53484 72894.43936 82684.26505 78145.67238 70573.48065 63599.51863 70957.07184 65190.91334 67265.54184 68078.08086 0.905262517 1.070747566 1.214550469 1.14788301 1.036654967 0.934214329 1.042289544 0.957590351 0.988064602 1 16.05490275 -5.99642274 11.1663231 0.98538843 1.092855037 0.267795441 0.077696553 0.204532745 521.5384552 0.025855576 0.02857389 1.01E-06 5.99642274 0.107466608 RAPSTS(ph)PSFEGTQETYTVAHEENVR ddPTM_HeLa_A485_30min_R1 1 RAPSTSPSFEGTQETYTVAHEENVR 25 1 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 0 RAPS(0.006)T(0.198)S(0.795)PSFEGTQETYTVAHEENVR 307.74 2.46E-91 721260000 30625 23929 27234 27617 47674 28694 34626 44042 27665 33022 TRUE FALSE FALSE 37437.4256 26727.2884 37308.9899 29125.64678 42927.40917 30196.37347 27227.87223 33240.63044 33217.11174 24790.22312 1.510168965 1.078138275 1.504988064 1.174884414 1.731626575 1.218075905 1.098331068 1.340876614 1.339927905 1 14.59748364 -12.89619837 0.22997096 2.89E-15 1.369349969 0.221093688 0.19295832 145.810807 2.31207502 68.22051432 0.336435713 1.27E-13 12.89619837 1.369349969 RAPSVANVGS(ph)HCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A485_30min_R1 2 RAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 36 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(0.314)VANVGS(0.685)HCDLS(0.001)LKIPEISIQDMTAQVTSPSGK;RAPS(0.353)VANVGS(0.617)HCDLS(0.03)LKIPEISIQDMTAQVTSPSGK ; 175.57 5.99E-15 533540000 437830 390490 242154 398180 356180 447060 600020 563900 311923 524650 TRUE FALSE FALSE 535223.773 436154.4087 331736.8415 419931.5652 320717.4686 470467.3703 471820.8253 425602.6408 374523.085 393864.4105 1.35890362 1.107371971 0.842261531 1.066183067 0.814283952 1.194490687 1.197927035 1.080581615 0.950893442 1 18.58733954 -4.318340987 3.793012639 1.025879549 1.37558983 0.410722297 0.121964866 0.232501724 5.994222227 0.032130076 0.200340669 4.80E-05 4.318340987 0.349710281 RAPSVANVGS(ph)HCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 3 RAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 36 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(0.318)VANVGS(0.675)HCDLS(0.007)LKIPEISIQDMTAQVTSPSGK;RAPS(0.359)VANVGS(0.56)HCDLS(0.081)LKIPEISIQDMTAQVTSPSGK;RAPS(0.052)VANVGS(0.474)HCDLS(0.474)LKIPEISIQDMTAQVTSPSGK ;; 169.01 6.68E-15 2730490000 1016740 1143630 613601 381165 1079580 1105600 1504010 1206250 863590 1436160 TRUE FALSE FALSE 945471.7765 1053004.594 851203.74 887371.383 944169.0097 969202.3129 1127690.79 931613.2073 938446.6765 1076536.188 0.878253594 0.978141381 0.79068753 0.82428384 0.877043447 0.900297011 1.047517773 0.865380298 0.871727943 1 20.03796539 -6.528251934 24.99299047 0.940505216 0.870784119 0.220286638 0.067500872 263.8242889 1227142.074 0.026748779 0.02078753 2.96E-07 6.528251934 -0.069721097 RAPSVANVGSHCDLS(ph)LKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 2 RAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 36 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RAPS(0.243)VANVGS(0.32)HCDLS(0.422)LKIPEIS(0.016)IQDMTAQVTSPSGK;RAPS(0.14)VANVGS(0.14)HCDLS(0.689)LKIPEIS(0.03)IQDMT(0.002)AQVTSPSGK ; 107.96 8.75E-05 4148000000 194401 243029 142422 98563 226950 216604 258546 263520 190831 302230 TRUE FALSE FALSE 180774.4938 223770.4969 197571.6126 229459.6451 198483.8148 189881.6007 193855.0562 203522.2486 207372.3847 226549.6408 0.797946504 0.987732738 0.872089719 1.012844886 0.876116219 0.838145671 0.855684677 0.898356086 0.915350755 1 17.78946768 -8.227228181 2.609079119 0.999961419 0.895457006 0.215526476 0.061318047 1.817769543 18.18659166 0.058317842 0.01572059 5.93E-09 8.227228181 -0.104504413 RAPSVANVGSHCDLSLK(ac)IPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 2 RAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 36 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 0 1 ; RAPSVANVGSHCDLSLK(1)IPEISIQDMTAQVTSPSGK;RAPSVANVGSHCDLSLK(1)IPEISIQDMTAQVTSPSGK 48.388 0.010382 23675000 17021.7 31860 21295.3 19134.5 37065 37037 44545 45421 32639 37467 FALSE TRUE FALSE 15828.56673 29335.29757 29541.41047 44546.083 32415.96208 32467.7515 33399.36985 35079.62983 35468.1748 28085.01933 0.563594653 1.044517621 1.051856512 1.586115448 1.154208288 1.156052311 1.189223673 1.249051297 1.262885896 1 14.77751318 -4.20601763 1.624917223 1.22784412 0.264908337 0.635179426 0.147405817 0.720487804 1.651066475 0.040397866 1.139453606 6.22E-05 4.20601763 -0.962935783 RAPVT(ph)PSSASR ddPTM_HeLa_A486_30min_R1 1 RAPVTPSSASR 11 1 E7EPU2;A0A0U1RQW6;Q9Y2E4 E7EPU2 DIP2C Disco-interacting protein 2 homolog C 1 0 RAPVT(0.927)PS(0.055)S(0.018)ASR 68.262 0.012726 99405000 32851 34877 42814 13341 51092 38936 35976 39513 32869 40813 TRUE FALSE FALSE 30548.31454 32113.2195 59392.7274 31058.52222 44683.56495 34132.47219 26974.42428 30516.75246 35718.11138 30593.15915 0.998534162 1.049686282 1.941372812 1.015211344 1.460573742 1.115689688 0.881714247 0.997502491 1.167519549 1 14.90092147 -6.495426837 8.789654122 1.009511061 1.299207977 0.199900731 0.267072094 0.524976625 158.5303173 0.096158003 0.082636489 3.20E-07 6.495426837 0.289696916 RAQS(ph)LKAPSIATIK ddPTM_HeLa_A485_30min_R1 2 RAQSLKAPSIATIK 14 2 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 RAQS(1)LKAPSIATIK;RAQS(1)LKAPSIATIK ; 187.47 6.62E-18 955520000 1028420 1080380 724770 1197100 1387010 1618380 2294570 2656270 1209630 2025430 TRUE FALSE FALSE 1257188.481 1206721.043 992892.5832 1262494.542 1248914.414 1703115.874 1804316.375 2004815.618 1452391.646 1520527.576 0.826810707 0.793619966 0.652992158 0.830300326 0.821369131 1.120082201 1.186638377 1.318500005 0.955189283 1 20.53614055 -6.233189133 3.324112203 1.145213225 0.77312564 0.711957499 0.104890721 0.126734678 2.91006953 0.037042228 0.035250771 5.85E-07 6.233189133 -0.372087585 RAQS(ph)LKAPSIATIK ddPTM_HeLa_A486_30min_R1 1 RAQSLKAPSIATIK 14 2 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 RAQS(1)LKAPSIATIK 184.2 8.91E-18 611880000 1310900 990000 523210 509050 1003000 1126100 1521300 1635400 832550 1567500 TRUE FALSE FALSE 1219012.679 911548.7945 725810.924 1185094.126 877194.3874 987173.2313 1140654.649 1263055.121 904716.1043 1174987.797 1.037468374 0.775794265 0.61771784 1.00860122 0.746556168 0.840156156 0.970779996 1.074951692 0.769979149 1 20.16421434 -6.736714754 6.982777904 0.960329973 0.828078905 0.149000865 0.134619794 0.301516085 54.17128887 0.051878031 0.038952585 1.83E-07 6.736714754 -0.132251068 RAQS(ph)TDS(ph)LGTSGSLQSK ddPTM_HeLa_A486_30min_R1 1 RAQSTDSLGTSGSLQSK 17 1 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 2 0 RAQS(0.729)T(0.281)DS(0.984)LGT(0.004)S(0.001)GS(0.001)LQSK 75.3 0.0025033 134290000 182650 192360 108840 110440 216570 218210 274310 274300 146300 314940 TRUE FALSE FALSE 169847.1782 177116.693 150985.7628 257109.9013 189405.7712 191289.4688 205674.7366 211847.8779 158981.4018 236076.9741 0.719456774 0.75024976 0.639561581 1.089093514 0.802305146 0.810284313 0.871218963 0.897367813 0.673430361 1 17.84889781 -1 0.040081859 1.329291897 3.29E-10 0.174668099 0.122749483 1481.369973 4.531088078 41.14397036 133.8011101 0.1 1 -1.329291897 RAQS(ph)TDSLGTSGSLQSK ddPTM_HeLa_A485_30min_R1 1 RAQSTDSLGTSGSLQSK 17 1 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 RAQS(0.493)T(0.493)DS(0.014)LGTSGSLQSK 140.51 5.85E-08 0 337310 391210 278490 359060 437410 467990 621190 699570 339970 534490 TRUE FALSE FALSE 412343.4458 436958.6064 381515.0399 378674.5386 393859.9246 492493.2327 488467.6818 527999.3606 408198.8606 401251.4796 1.027643428 1.088989396 0.950812793 0.943733688 0.981578747 1.227392939 1.21736045 1.315881405 1.017314281 1 18.61414719 -6.255205948 24.77287651 1.179193069 0.997878327 0.381636046 0.097661791 413.0583222 1641575.019 0.032201627 0.031414865 5.56E-07 6.255205948 -0.181314742 RAQS(ph)TDSLGTSGSLQSK ddPTM_HeLa_A486_30min_R1 1 RAQSTDSLGTSGSLQSK 17 1 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 RAQS(0.498)T(0.498)DS(0.003)LGTSGSLQSK 73.208 0.0014601 0 442910 430820 278830 174650 542200 472490 601340 562970 339670 599760 TRUE FALSE FALSE 411864.2962 396680.2542 386800.4433 406594.0263 474192.2202 414198.9877 450878.3717 434794.0205 369112.8691 449576.1922 0.916116786 0.882342662 0.86036683 0.904394035 1.054753851 0.92130988 1.00289646 0.967119763 0.821024057 1 18.77820611 -5.541894037 24.99670949 0.961444829 0.885298499 0.258191241 0.059035935 318.7213259 418975.5631 0.017191376 0.022197129 2.87E-06 5.541894037 -0.07614633 RAQST(ph)DSLGTSGSLQSK ddPTM_HeLa_A485_30min_R1 1 RAQSTDSLGTSGSLQSK 17 1 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 0 RAQS(0.328)T(0.665)DS(0.007)LGTSGSLQSK 153.61 1.64E-09 0 332210 375400 285870 355760 488290 451210 578300 719920 342800 533310 TRUE FALSE FALSE 406108.9684 419299.7645 391625.209 375194.268 439674.1331 474834.6579 454741.4807 543358.4912 411596.8157 400365.6318 1.014345229 1.047292103 0.978168898 0.937129059 1.098181507 1.186002544 1.135815476 1.35715568 1.028052317 1 18.61095861 -5.963369541 4.956069261 1.161796815 0.997487708 0.338683906 0.095089118 0.193632413 11.5180837 0.029242506 0.032692157 1.09E-06 5.963369541 -0.164309108 RAS(ph)AGPAPGPVVTAEGLHPSLPS(ph)PTGNSTPLGSSK ddPTM_HeLa_A486_30min_R1 1 RASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK 35 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 RAS(0.908)AGPAPGPVVT(0.085)AEGLHPS(0.027)LPS(0.554)PT(0.152)GNS(0.152)T(0.122)PLGSSK 54.425 0.024445 115340000 43935 44037 35364 9807.4 54795 41370 51072 47283 42732 33027 TRUE FALSE FALSE 40855.38338 40547.34774 49057.88788 22832.12284 47922.10016 36266.19002 38293.24542 36517.69308 46436.04417 24756.82423 1.650267538 1.637825085 1.981590507 0.922255723 1.935712744 1.464896696 1.546775348 1.475055635 1.875686628 1 14.59553864 -10.56330211 2.882462757 0.966913088 1.601009102 0.286028946 0.288814233 29518599.1 32137917.93 7557742.607 0.068769048 2.73E-11 10.56330211 0.634096015 RAS(ph)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK ddPTM_HeLa_A486_30min_R1 1 RASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK 35 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 RAS(1)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK 109.59 6.80E-05 554300000 127030 122450 86215 9230.8 120310 97762 107320 113160 115150 53729 TRUE FALSE FALSE 118125.853 112746.616 119599.7569 21489.7689 105219.598 85701.11841 80467.40088 87395.93827 125131.2947 40274.90868 2.932988723 2.79942574 2.969584807 0.533577098 2.612534737 2.127903482 1.997953652 2.169984765 3.106929322 1 15.2975937 RAS(ph)AILPGVLGSETLSNEVFQES(ph)EEEKQPEVPSSLAK ddPTM_HeLa_A485_30min_R1 1 RASAILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK 37 2 Q9BZQ8 Q9BZQ8 FAM129A Protein Niban 2 0 RAS(1)AILPGVLGSETLSNEVFQES(1)EEEKQPEVPSSLAK 159.1 5.54E-11 68195000 23589 16351 12503 40483 25931 24055 41988 38657 20302 58454 TRUE FALSE FALSE 28836.29167 18263.10722 17128.37999 42694.48378 23349.21859 25314.4826 33016.92079 29176.31014 24376.42518 43882.49357 0.657125184 0.416182075 0.390323762 0.972927478 0.532085046 0.576869739 0.752393907 0.66487357 0.555493164 1 15.42135789 -14 0.175969134 2.514621039 0.531103898 0.348785895 0.15891356 155.5375954 1.485263544 82.59185131 0.537047478 1.00E-14 14 -1.983517141 RAS(ph)AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK ddPTM_HeLa_A486_30min_R1 2 RASAILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK 37 2 Q9BZQ8 Q9BZQ8 FAM129A Protein Niban 1 0 RAS(1)AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK;RAS(1)AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK ; 361.56 9.58E-151 471970000 345680 385200 170719 243050 338710 421390 588540 521180 266200 554760 TRUE FALSE FALSE 321449.6171 354675.3491 236825.9688 565832.6831 296225.8335 369403.1862 441281.0671 402518.6913 289274.4303 415844.4851 0.773004401 0.852903818 0.569506095 1.360683388 0.71234763 0.888320513 1.061168497 0.967954862 0.695631277 1 18.66568457 RAS(ph)AILR ddPTM_HeLa_A486_30min_R1 1 RASAILR 7 1 P46779 P46779 RPL28 60S ribosomal protein L28 1 0 RAS(1)AILR 88.392 0.0042171 71177000 24526 30249 29197 13315 39337 36912 38666 35525 29106 36070 TRUE FALSE FALSE 22806.85405 27851.95908 40502.86032 30997.9929 34402.98666 32358.17273 28991.35783 27436.73301 31628.93152 27037.83722 0.843516213 1.030110465 1.498006663 1.146467177 1.272401575 1.196773709 1.072251364 1.014753243 1.169802572 1 14.72269213 -6.771686251 19.90030138 1.065430605 1.17767327 0.080499143 0.162527135 47.2173426 91688.77606 0.070456361 0.048421293 1.69E-07 6.771686251 0.112242665 RAS(ph)DDGKLTDPSK ddPTM_HeLa_A486_30min_R1 1 RASDDGKLTDPSK 13 2 P04049;P04049-2;A0A0B4J1W9 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 RAS(1)DDGKLTDPSK 112.74 0.00011731 209730000 355250 304150 136720 205940 292560 368650 551330 490210 225320 611810 TRUE FALSE FALSE 330348.8095 280048.0463 189661.6455 479438.7276 255864.3968 323169.7112 413381.4026 378599.8842 244850.919 458608.7938 0.720328118 0.610646918 0.413558676 1.045419831 0.557914284 0.704674039 0.901381326 0.825539958 0.533899311 1 18.80690449 -14 0.113284897 1.880338767 0.555798736 0.193028951 0.178323117 272.0429556 2.029198087 56.2624977 2.040517499 1.00E-14 14 -1.324540031 RAS(ph)DSVFQPK ddPTM_HeLa_A485_30min_R1 6 RASDSVFQPK 10 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 RAS(0.999)DS(0.001)VFQPK;RAS(0.992)DS(0.008)VFQPK;RAS(1)DSVFQPK;RAS(0.791)DS(0.209)VFQPK;RAS(0.784)DS(0.216)VFQPK;RAS(0.817)DS(0.183)VFQPK ;;;;; 154.23 1.45E-06 2033530000 3381790 3509990 2908390 3656650 4060570 3862440 5010250 4992520 3087940 4627560 TRUE FALSE FALSE 4134057.518 3920452.798 3984324.489 3856403.53 3656285.393 4064671.386 3939769.158 3768096.642 3707661.234 3473994.456 1.190001185 1.128514408 1.146900071 1.110077629 1.052473008 1.170028173 1.134074682 1.08465822 1.067261701 1 21.72816402 -14 0.084292203 0.588551306 1.234530204 0.61788889 0.033936484 171.5641377 1.0140247 12.7843253 1.053031221 1.00E-14 14 0.645978898 RAS(ph)DSVFQPK ddPTM_HeLa_A486_30min_R1 7 RASDSVFQPK 10 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 RAS(0.997)DS(0.003)VFQPK;RAS(0.997)DS(0.003)VFQPK;RAS(0.925)DS(0.075)VFQPK;RAS(0.819)DS(0.181)VFQPK;RAS(0.941)DS(0.059)VFQPK;RAS(0.995)DS(0.005)VFQPK;RAS(0.998)DS(0.002)VFQPK ;;;;;; 170 1.67E-07 2321330000 3364650 3188970 2080120 1171247 3424420 3250590 3910580 4032080 2634480 4369180 TRUE FALSE FALSE 3128805.41 2936264.403 2885598.172 2726722.208 2994897.312 2849565.255 2932111.522 3114063.404 2862838.848 3275108.889 0.955328667 0.896539475 0.881069384 0.832559252 0.914442058 0.870067333 0.895271462 0.950827441 0.874120203 1 21.64311144 -9.543602881 0.516337973 1.018927408 0.891353242 0.430178417 0.035298964 9.688306718 2.158877982 0.36397555 0.016990503 2.86E-10 9.543602881 -0.127574166 RAS(ph)DTSLTQGIVAFR ddPTM_HeLa_A485_30min_R1 1 RASDTSLTQGIVAFR 15 1 Q9H0K1 Q9H0K1 SIK2 Serine/threonine-protein kinase SIK2 1 0 RAS(0.998)DT(0.002)SLTQGIVAFR 113.93 0.00010295 46753000 41730 50342 38158 53069 70329 51068 66932 82751 40846 60537 TRUE FALSE FALSE 51012.69453 56229.05898 52274.23209 55968.02509 63326.79782 53741.84151 52631.43142 62456.1875 49043.41754 45446.24 1.12248438 1.237265371 1.150243278 1.231521576 1.393444162 1.182536586 1.1581031 1.374287235 1.079152369 1 15.47187332 -7.97147842 9.829580231 1.000010517 1.230005851 0.459051182 0.085400851 0.241731854 78.7919865 0.081647973 0.021094264 1.07E-08 7.97147842 0.229995335 RAS(ph)DTSLTQGIVAFR ddPTM_HeLa_A486_30min_R1 1 RASDTSLTQGIVAFR 15 1 Q9H0K1 Q9H0K1 SIK2 Serine/threonine-protein kinase SIK2 1 0 RAS(0.981)DT(0.019)SLTQGIVAFR 81.807 0.0021338 49401000 73916 62961 41619 31804 81704 62766 85659 81252 46537 70346 TRUE FALSE FALSE 68734.8701 57971.74106 57734.9914 74041.31929 71455.92246 55022.56908 64226.21219 62752.69332 50570.86463 52730.90372 1.3035026 1.099388347 1.094898576 1.404135223 1.355105212 1.043459626 1.217999459 1.190055335 0.959036562 1 15.6863611 -7.730628556 6.125091611 0.978261205 1.212279167 0.418959236 0.110343996 0.162674832 17.96171865 0.086392446 0.029609978 1.86E-08 7.730628556 0.234017961 RAS(ph)EELDGLFR ddPTM_HeLa_A485_30min_R1 3 RASEELDGLFR 11 1 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 RAS(1)EELDGLFR;RAS(1)EELDGLFR;RAS(1)EELDGLFR ;; 108.97 0.0016126 145193000 196302 252879 259267 211340 309155 218001 239665 251454 206125 267876 TRUE FALSE FALSE 239968.7027 282450.9993 355180.6523 222884.9691 278374.4427 229415.1953 188458.6149 189784.5122 247492.3968 201099.4431 1.193283775 1.404533971 1.766194112 1.108332105 1.384262624 1.140804727 0.937141406 0.943734648 1.23069658 1 17.61754956 -6.23879995 1.569758013 1.020525362 1.4070255 0.446648073 0.179586576 0.355759061 1.745964774 0.079328258 0.073282234 5.77E-07 6.23879995 0.386500138 RAS(ph)EELDGLFR ddPTM_HeLa_A486_30min_R1 2 RASEELDGLFR 11 1 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 RAS(1)EELDGLFR;RAS(1)EELDGLFR ; 105.66 0.0019504 144571000 223730 268620 231420 78345 285100 217430 254800 276900 216540 229980 TRUE FALSE FALSE 208047.6823 247333.5729 321032.0216 182391.1193 249340.0995 190605.6973 191046.345 213855.9147 235309.8615 172391.5111 1.206832523 1.43472014 1.862226392 1.058005224 1.446359499 1.105655934 1.108212022 1.240524625 1.3649736 1 17.39532921 -5.296335259 24.99989231 1.202997703 1.494606177 0.343001953 0.197257417 701.4711633 502542.2263 0.055287536 0.082008514 5.05E-06 5.296335259 0.291608474 RAS(ph)FAEK ddPTM_HeLa_A485_30min_R1 8 RASFAEK 7 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK ;;;;;;; 147.62 0.00064154 29693290000 10972820 10965960 8641440 12915380 14004190 11549860 16913050 18301740 10379690 16142670 TRUE FALSE FALSE 13413685.95 12248333.63 11838268.26 13620914.51 12609883.67 12154592.81 13299438.7 13813209.57 12462798.57 12118599.45 1.106867671 1.010705377 0.97686769 1.123967713 1.040539686 1.002970092 1.097440241 1.139835475 1.02840255 1 23.53071964 -6.784064525 24.99909117 1.078072517 1.04262885 0.022323596 0.055150393 652.0125593 720419.3501 0.022919474 0.015465673 1.64E-07 6.784064525 -0.035443668 RAS(ph)FAEK ddPTM_HeLa_A486_30min_R1 7 RASFAEK 7 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK;RAS(1)FAEK ;;;;;; 141.1 0.0008843 19505640000 7484490 7291090 4873460 3264860 7606510 7805150 9825770 8916890 5616160 8157690 TRUE FALSE FALSE 6959865.901 6713317.475 6760594.228 7600759.077 6652430.588 6842229.95 7367258.42 6886708.801 6102973.271 6114951.326 1.138171921 1.09785297 1.105584308 1.242979489 1.087895918 1.118934491 1.204794286 1.126208278 0.998041185 1 22.54390958 -7.741473527 5.260264952 0.996445184 1.141575206 0.604925742 0.045782488 0.111926312 8.483928578 0.036816171 0.011802393 1.81E-08 7.741473527 0.145130022 RAS(ph)FAK ddPTM_HeLa_A485_30min_R1 2 RASFAK 6 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0;K7ENT7;A6PVV2;Q96J92-2;Q9Y3S1-3;Q96J92-3;Q96J92;F8W9F9;H0Y7T5;Q9Y3S1-2;Q9Y3S1-4;Q9Y3S1 F5GWT4;F8W9F9 WNK1;WNK4;WNK2 Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4;Serine/threonine-protein kinase WNK2 1 0 RAS(1)FAK;RAS(1)FAK ; 90.601 0.0091582 7071900000 6601700 5896600 3119600 7271400 3458300 6103000 6655900 9520400 5289200 8459700 TRUE FALSE FALSE 8070225.389 6586156.076 4273669.857 7668618.17 3113979.509 6422543.643 5233812.591 7185506.973 6350693.925 6350852.479 1.270731042 1.037050711 0.672928535 1.2074943 0.490324648 1.011288432 0.824111819 1.131424009 0.999975034 1 22.59851883 -9.915074873 17.0103996 1 0.950312001 0.000858421 0.227986236 0 0 0.213077202 0.051678812 1.22E-10 9.915074873 -0.049687999 RAS(ph)FAK ddPTM_HeLa_A486_30min_R1 5 RASFAK 6 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0;K7ENT7;A6PVV2;Q96J92-2;Q9Y3S1-3;Q96J92-3;Q96J92;F8W9F9;H0Y7T5;Q9Y3S1-2;Q9Y3S1-4;Q9Y3S1 F5GWT4;F8W9F9 WNK1;WNK4;WNK2 Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK4;Serine/threonine-protein kinase WNK2 1 0 RAS(1)FAK;RAS(1)FAK;RAS(1)FAK;RAS(1)FAK;RAS(1)FAK ;;;; 87.258 0.0098834 7883180000 6697620 3831250 4773640 3037030 3168330 9200230 5433820 4447560 6474080 7573330 TRUE FALSE FALSE 6228151.425 3527647.797 6622121.251 7070359.323 2770928.508 8065199.164 4074220.763 3434947.678 7035258.467 5676918.874 1.097100657 0.621401833 1.166499187 1.245457171 0.488104299 1.420700092 0.717681696 0.605072532 1.239274089 1 22.43667669 RAS(ph)GQAFELILS(ph)PR ddPTM_HeLa_A485_30min_R1 13 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 0 RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR ;;;;;;;;;;;; 186.96 6.94E-18 10946008000 955420 1323570 1254982 1021025 1660213 1207163 1317794 1605432 1156563 1366569 TRUE FALSE FALSE 1167949.883 1478349.998 1719252.066 1076801.01 1494916.364 1270368.188 1036236.547 1211697.285 1388674.585 1025908.498 1.138454243 1.441015452 1.675833731 1.049607263 1.457163448 1.238286056 1.010067222 1.18109684 1.35360472 1 19.96847063 -6.518019781 24.18716227 1.147411156 1.357406435 0.230734453 0.18581232 221.508312 1102651.141 0.069464592 0.055374418 3.03E-07 6.518019781 0.20999528 RAS(ph)GQAFELILS(ph)PR ddPTM_HeLa_A486_30min_R1 13 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 0 RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR ;;;;;;;;;;;; 179.79 1.19E-17 16278951000 1339672 1507127 1307768 589946.8 1754311 1345826 1505524 1592477 1196938 1441174 TRUE FALSE FALSE 1245767.911 1387696.768 1814170.793 1373425.965 1534268.956 1179791.671 1128825.971 1229904.751 1300689.55 1080294.65 1.153174193 1.284553957 1.67932961 1.271343855 1.42023193 1.092101744 1.044924152 1.138490088 1.204013692 1 20.04299343 -6.266837996 24.67817874 1.101375189 1.370062673 0.484104684 0.137011891 346.6996958 1584829.886 0.048857931 0.044340107 5.41E-07 6.266837996 0.268687484 RAS(ph)GQAFELILSPR ddPTM_HeLa_A485_30min_R1 12 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(0.99)GQAFELILS(0.01)PR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR ;;;;;;;;;;; 189.45 7.38E-18 73137818300 5076788.4 6735475.8 5982241.7 4642030.6 7773483.4 5389269.9 7090344.3 7985724.2 5647888.8 6074546.5 TRUE FALSE FALSE 6206102.465 7523131.104 8195321.847 4895612.977 6999528.098 5671443.739 5575434.318 6027212.819 6781368.277 4560273.851 1.360905653 1.649710379 1.797111777 1.073534866 1.534892054 1.243662974 1.22260954 1.321677824 1.487052861 1 22.12068903 -5.25844954 24.99988684 1.290547199 1.607289375 0.406554958 0.183344152 266.597626 2229177.037 0.048761281 0.079978202 5.52E-06 5.25844954 0.316742175 RAS(ph)GQAFELILSPR ddPTM_HeLa_A486_30min_R1 15 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RAS(1)GQAFELILSPR;RAS(0.997)GQAFELILS(0.003)PR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR ;;;;;;;;;;;;;; 227.63 1.33E-27 49092697500 6965131.3 7808885.8 7082437.9 2946448.6 9126251.7 6764303.5 8180355 7806625.8 5864409.7 5968671.6 TRUE FALSE FALSE 6476911.564 7190081.25 9824947.529 6859481.246 7981552.113 5929792.509 6133543.656 6029227.523 6372741.455 4474077.382 1.447653004 1.607053396 2.195971748 1.533161066 1.783954865 1.325366551 1.370906923 1.347591248 1.424369967 1 22.09315878 -6.267339668 23.76657001 1.320200093 1.724420477 0.481855494 0.216699793 230.6376839 929012.5773 0.075239982 0.068209153 5.40E-07 6.267339668 0.404220384 RAS(ph)HHESNGFAGR ddPTM_HeLa_A486_30min_R1 3 RASHHESNGFAGR 13 1 E7EN19;O95819-6 E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 RAS(0.995)HHES(0.005)NGFAGR;RAS(0.779)HHES(0.221)NGFAGR;RAS(0.978)HHES(0.022)NGFAGR ;; 114.01 0.00019429 194019000 62836 66701 87633 12246.2 100485 43303 46386 45915.2 59501 23887.3 TRUE FALSE FALSE 58431.52089 61415.36984 121566.8445 28509.77249 87881.23431 37960.71613 34779.73218 35461.31128 64658.59459 17905.7646 3.263279854 3.42992166 6.789257382 1.592211957 4.907985572 2.120027655 1.942376266 1.980441052 3.611049069 1 14.1281365 -6.280340643 23.83628502 2.180280866 3.98663109 0.315992045 1.371507938 579.4757717 730770.7771 0.468083765 0.413618648 5.24E-07 6.280340643 1.806350224 RAS(ph)HTLLPSHR ddPTM_HeLa_A485_30min_R1 4 RASHTLLPSHR 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RAS(0.797)HT(0.203)LLPSHR;RAS(0.862)HT(0.138)LLPSHR;RAS(0.793)HT(0.207)LLPSHR;RAS(0.75)HT(0.25)LLPSHR ;;; 118.52 0.00019768 1609240000 464222 649550 628630 365265 680330 485192 561347 641620 411530 467870 TRUE FALSE FALSE 567486.5824 725509.2222 861186.3965 385218.5021 612593.9564 510595.9029 441410.6277 484261.689 494120.2962 351238.6195 1.615672511 2.065573607 2.451855658 1.096743014 1.744096242 1.453700916 1.256725779 1.378725636 1.406793754 1 18.42209196 -5.268381412 24.98668612 1.368483522 2.046487899 0.592857107 0.268760442 372.781286 1341763.976 0.074645222 0.113469214 5.39E-06 5.268381412 0.678004377 RAS(ph)HTLLPSHR ddPTM_HeLa_A486_30min_R1 5 RASHTLLPSHR 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RAS(0.964)HT(0.036)LLPSHR;RAS(0.693)HT(0.307)LLPSHR;RAS(0.755)HT(0.245)LLPSHR;RAS(0.833)HT(0.167)LLPSHR;RAS(0.993)HT(0.007)LLPSHR ;;;; 103.76 0.00071924 1701290000 519054 586133 536370 131765 667360 489078 536734 547186 468612 470806 TRUE FALSE FALSE 482670.995 539685.6864 744066.8285 306755.579 583653.4859 428740.5289 402437.4762 422603.6928 509231.6655 352913.1132 1.367676567 1.529231038 2.108356989 0.86920992 1.653816376 1.214861429 1.140330187 1.197472344 1.442937784 1 18.42895351 -5.268490504 24.99961617 1.240098536 1.654502485 0.369220884 0.269047518 614.2518985 2177816.63 0.073706317 0.111976118 5.39E-06 5.268490504 0.414403949 RAS(ph)IS(ph)EPS(ph)DTDPEPR ddPTM_HeLa_A485_30min_R1 1 RASISEPSDTDPEPR 15 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 3 0 RAS(1)IS(0.999)EPS(0.992)DT(0.009)DPEPR 130.36 1.62E-05 404890000 220020 297580 296360 263420 367680 268980 329440 328360 277490 340900 TRUE FALSE FALSE 268962.6899 332379.3924 405995.8966 277809.9676 331072.4882 283063.3769 259052.4527 247829.1952 333179.6977 255919.9038 1.050964329 1.298763353 1.586417823 1.085534823 1.293656661 1.106062376 1.012240349 0.968385778 1.301890524 1 17.96533283 -6.33812128 4.010583198 1.066859189 1.273831553 0.250424135 0.160227091 0.330157888 10.14967475 0.058992479 0.052128167 4.59E-07 6.33812128 0.206972364 RAS(ph)ISEPSDTDPEPR ddPTM_HeLa_A485_30min_R1 1 RASISEPSDTDPEPR 15 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 RAS(0.989)IS(0.011)EPSDTDPEPR 242.9 7.48E-41 917020000 302750 412300 462160 339440 474600 462010 493510 573780 377720 513850 TRUE FALSE FALSE 370095.693 460514.8985 633132.2161 357982.7477 427347.1576 486200.1292 388067.5569 433059.5553 453524.9393 385756.6517 0.959401974 1.193796391 1.64127362 0.92800149 1.107815395 1.260380416 1.005990578 1.122623689 1.175676265 1 18.55733151 RAS(ph)ISEPSDTDPEPR ddPTM_HeLa_A486_30min_R1 3 RASISEPSDTDPEPR 15 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 RAS(0.982)IS(0.018)EPSDTDPEPR;RAS(0.984)IS(0.016)EPSDTDPEPR;RAS(0.993)IS(0.006)EPS(0.001)DTDPEPR ;; 209.23 3.05E-25 989860000 1438010 1822480 1600640 529283 2206450 1647640 1787160 1874650 1557360 1858880 TRUE FALSE FALSE 1337212.925 1678060.047 2220450.675 1232197.572 1929696.467 1444370.929 1339993.665 1447833.118 1692353.219 1393404.349 0.959673282 1.204287936 1.593543666 0.884307253 1.384879033 1.036577021 0.961668927 1.039061719 1.21454567 1 20.41018254 RAS(ph)LSDIGFGK ddPTM_HeLa_A485_30min_R1 2 RASLSDIGFGK 11 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6RA44 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RAS(0.94)LS(0.06)DIGFGK;RAS(0.943)LS(0.057)DIGFGK ; 142.91 3.46E-05 156430000 713390 813090 671420 862160 1006140 811890 1041030 1117410 722800 1113000 TRUE FALSE FALSE 872081.1443 908173.8026 919806.1981 909257.6177 905965.1688 854399.305 818605.4361 843363.4455 867859.3301 835549.5832 1.043721596 1.086917905 1.100839755 1.088215033 1.084274574 1.022559669 0.979720956 1.009351764 1.038668856 1 19.67236592 -6.32659017 4.09573189 1.007126073 1.082901049 0.770581347 0.019388697 0.109378146 3.663145971 0.007264236 0.006451927 4.71E-07 6.32659017 0.075774975 RAS(ph)LSDIGFGK ddPTM_HeLa_A486_30min_R1 2 RASLSDIGFGK 11 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6RA44 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RAS(0.976)LS(0.024)DIGFGK;RAS(0.943)LS(0.057)DIGFGK ; 133.25 1.88E-05 196480000 958040 984910 617010 366400 944060 1046740 1123460 1206160 809530 1079260 TRUE FALSE FALSE 890886.3433 906862.1446 855932.7961 852997.7168 825647.1918 917603.8613 842358.4253 931543.6983 879700.7122 809006.2712 1.101210677 1.120958115 1.058005144 1.054377138 1.020569582 1.134235783 1.041226076 1.151466597 1.087384293 1 19.62579136 -6.276285238 24.94595724 1.089726924 1.072150125 0.004773937 0.047544522 3627.30197 6095045.782 0.01651708 0.014606024 5.29E-07 6.276285238 -0.017576798 RAS(ph)LSDLTDLEDIEGLTVR ddPTM_HeLa_A485_30min_R1 3 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 RAS(0.987)LS(0.013)DLTDLEDIEGLTVR;RAS(0.987)LS(0.013)DLTDLEDIEGLTVR;RAS(0.996)LS(0.004)DLTDLEDIEGLTVR ;; 252.8 3.91E-58 435663000 75420 83831 82645 76882 87363 92700 122966 118526 88358 145606 TRUE FALSE FALSE 92196.9188 93634.30622 113218.8246 81081.86898 78664.83297 97553.62866 96693.30956 89457.31266 106090.6401 109309.1039 0.843451419 0.856601169 1.035767568 0.741766844 0.719654907 0.892456577 0.88458606 0.818388492 0.970556307 1 16.73805404 -7.850446862 5.232850599 0.996534363 0.850433403 0.306686873 0.0821772 0.2696638 11.40977665 0.082424442 0.021626795 1.41E-08 7.850446862 -0.14610096 RAS(ph)LSDLTDLEDIEGLTVR ddPTM_HeLa_A486_30min_R1 5 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 RAS(0.676)LS(0.324)DLTDLEDIEGLTVR;RAS(0.974)LS(0.026)DLTDLEDIEGLTVR;RAS(0.994)LS(0.006)DLTDLEDIEGLTVR;RAS(0.981)LS(0.019)DLTDLEDIEGLTVR;RAS(0.999)LS(0.001)DLTDLEDIEGLTVR ;;;; 331.42 4.05E-102 408714000 151486.7 156687.8 164690.1 58716.6 204811.4 163896.7 175140.9 165332 179168.1 202249.9 TRUE FALSE FALSE 140868.2646 144271.2881 228462.5173 136695.2122 179122.0444 143676.7915 131318.7944 127689.5128 194698.5352 151605.2086 0.929178264 0.951624878 1.506956914 0.901652479 1.181503235 0.947703531 0.8661892 0.84225017 1.284247005 1 17.20995979 -6.279754557 24.18712046 0.970600556 1.098498981 0.063704419 0.19744769 1454.72433 1921110.022 0.069367755 0.061307161 5.25E-07 6.279754557 0.127898425 RAS(ph)LSEIGFGK ddPTM_HeLa_A485_30min_R1 4 RASLSEIGFGK 11 1 Q00537-2;Q00537;F5H6Z0 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RAS(0.948)LS(0.052)EIGFGK;RAS(0.953)LS(0.047)EIGFGK;RAS(0.989)LS(0.011)EIGFGK;RAS(0.999)LS(0.001)EIGFGK ;;; 184.44 8.98E-11 1092790000 2542100 2620910 2249020 2645640 3188660 2939800 3621000 3987740 2529860 3706530 TRUE FALSE FALSE 3107581.375 2927402.626 3081026.088 2790164.614 2871185.814 3093723.382 2847343.769 3009740.512 3037579.697 2782560.285 1.116806486 1.052053622 1.107263014 1.002732853 1.031850354 1.111826184 1.02328197 1.081644315 1.091649196 1 21.40798151 -9.154926821 0.006079046 2.13E-06 2.08418756 0.162770837 0.039529418 22195.56034 37.60016961 6601.212672 6289.845058 7.00E-10 9.154926821 2.08418543 RAS(ph)LSEIGFGK ddPTM_HeLa_A486_30min_R1 4 RASLSEIGFGK 11 1 Q00537-2;Q00537;F5H6Z0 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RAS(0.991)LS(0.009)EIGFGK;RAS(0.751)LS(0.249)EIGFGK;RAS(0.998)LS(0.002)EIGFGK;RAS(0.99)LS(0.01)EIGFGK ;;; 184 9.30E-11 1486210000 3468710 3664830 2412210 1372360 3612730 3429280 4141090 4309960 2919370 3741280 TRUE FALSE FALSE 3225571.341 3374415.524 3346282.313 3194923.435 3159587.716 3006210.3 3104945.482 3328676.194 3172423.342 2804439.136 1.150166284 1.203240776 1.193209105 1.13923793 1.126638006 1.071947065 1.107153813 1.186931159 1.131214902 1 21.41928084 -14 0.141316116 0.51838737 1.195023125 0.596753164 0.036966599 110.2340751 0.949438882 15.08635035 0.251631209 1.00E-14 14 0.676635756 RAS(ph)LTLEEK ddPTM_HeLa_A485_30min_R1 3 RASLTLEEK 9 1 Q6P3W7;A0A0U1RQQ9 Q6P3W7 SCYL2 SCY1-like protein 2 1 0 RAS(0.997)LT(0.003)LEEK;RAS(0.999)LT(0.001)LEEK;RAS(1)LTLEEK ;; 154.23 2.79E-05 631050000 723070 651907 536454 901320 915770 778140 1079170 1119930 665510 1196120 TRUE FALSE FALSE 883914.4269 728141.8528 734910.6583 950556.8293 824592.7233 818882.2072 848596.5135 845265.4115 799071.7526 897949.297 0.984370086 0.810894173 0.818432244 1.058586306 0.918306553 0.911947044 0.945038341 0.941328663 0.889885159 1 19.77627446 -14 0.079068653 1.239034086 0.843753925 0.094254958 0.069549782 629.0157993 3.520410416 27.04585021 2.587955668 1.00E-14 14 -0.395280162 RAS(ph)LTLEEK ddPTM_HeLa_A486_30min_R1 5 RASLTLEEK 9 1 Q6P3W7;A0A0U1RQQ9 Q6P3W7 SCYL2 SCY1-like protein 2 1 0 RAS(1)LTLEEK;RAS(0.999)LT(0.001)LEEK;RAS(1)LTLEEK;RAS(0.998)LT(0.002)LEEK;RAS(0.997)LT(0.003)LEEK ;;;; 179.67 2.25E-08 1032070000 900520 926740 602061 471886 970720 1047650 1311290 1243350 744848 1221210 TRUE FALSE FALSE 837398.1983 853301.7473 835195.143 1098574.456 848963.246 918401.5947 983191.3726 960266.3471 809412.0244 915411.0673 0.91477832 0.932151443 0.912371691 1.200088676 0.927412041 1.003266868 1.074043572 1.04900015 0.884206072 1 19.80406021 RAS(ph)MQPIQIAEGTGITTR ddPTM_HeLa_A485_30min_R1 3 RASMQPIQIAEGTGITTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RAS(1)MQPIQIAEGTGITTR;RAS(1)MQPIQIAEGTGITTR;RAS(1)MQPIQIAEGTGITTR ;; 215.6 1.77E-34 1712600000 247442 361577 334749 260177 441250 326684 395900 425390 294204 350256 TRUE FALSE FALSE 302484.6192 403860.2848 458586.5852 274389.8107 397317.6007 343788.6691 311312.7308 321062.4355 353248.0442 262943.6252 1.150378219 1.535919666 1.744049071 1.043530949 1.511037206 1.307461509 1.18395238 1.221031448 1.343436427 1 18.00439399 -8.26846522 0.25862329 0.922435738 1.468311687 0.242332041 0.194055004 4.70146631 0.85161307 0.853602759 0.403562991 5.39E-09 8.26846522 0.545875949 RAS(ph)MQPIQIAEGTGITTR ddPTM_HeLa_A486_30min_R1 4 RASMQPIQIAEGTGITTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RAS(1)MQPIQIAEGTGITTR;RAS(1)MQPIQIAEGTGITTR;RAS(1)MQPIQIAEGTGITTR;RAS(1)MQPIQIAEGTGITTR ;;; 225.13 8.51E-35 1033670000 753943 825848 747815 256739 1078580 775448 915840 926140 739256 842320 TRUE FALSE FALSE 701095.4891 760404.7968 1037388.995 597701.3669 943294.439 679781.1099 686687.1452 715278.1395 803335.3053 631397.5894 1.110386705 1.204320082 1.643004365 0.946632323 1.493978525 1.076629245 1.087566942 1.132849019 1.272312911 1 19.26818923 RAS(ph)PGLSMPSSS(ph)PPIKK ddPTM_HeLa_A485_30min_R1 1 RASPGLSMPSSSPPIKK 17 2 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 2 0 RAS(1)PGLSMPS(0.232)S(0.187)S(0.581)PPIKK 105.46 0.000137 237870000 182250 176560 108360 259430 207440 239230 286070 311520 150990 324500 TRUE FALSE FALSE 222790.8837 197207.1561 148446.8732 273602.004 186786.5452 251755.7129 224948.8075 235119.2316 181292.308 243608.122 0.914546206 0.809526195 0.609367504 1.123123489 0.766750073 1.033445481 0.923404383 0.9651535 0.744196485 1 17.89420271 -5.256804624 24.99992302 0.931540568 0.780984609 0.244043164 0.127800957 586.8812137 3165634.097 0.033561236 0.055734335 5.54E-06 5.256804624 -0.150555958 RAS(ph)PGLSMPSSS(ph)PPIKK ddPTM_HeLa_A486_30min_R1 1 RASPGLSMPSSSPPIKK 17 2 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 2 0 RAS(1)PGLSMPS(0.252)S(0.208)S(0.54)PPIKK 89.923 0.00059624 115250000 351200 390490 169040 1070200 298390 493260 678030 600190 274530 1374300 TRUE FALSE FALSE 326582.6936 359546.1503 234496.815 2491479.685 260963.1438 432406.5963 508379.7225 463539.8391 298326.4814 1030166.335 0.317019381 0.349017569 0.227630051 2.418521748 0.253321367 0.419744445 0.493492852 0.449966014 0.289590595 1 19.97444587 RAS(ph)PGLSMPSSSPPIKK ddPTM_HeLa_A485_30min_R1 1 RASPGLSMPSSSPPIKK 17 2 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 1 0 RAS(1)PGLSMPSSSPPIKK 122.3 1.27E-05 466940000 571230 485320 371000 624250 719230 770150 950820 1047500 566970 1063600 TRUE FALSE FALSE 698298.1428 542073.9523 508248.3386 658351.1968 647620.9358 810473.8631 747669.5395 790598.9826 680755.6784 798464.0941 0.874551715 0.67889584 0.636532491 0.824521981 0.811083354 1.015041088 0.936384673 0.990149699 0.852581454 1 19.60686801 -5.930742322 2.029784057 0.956039889 0.732041432 0.615666726 0.076689895 0.208680399 1.749403543 0.027207521 0.031302012 1.17E-06 5.930742322 -0.223998458 RAS(ph)PNSDDTVLSPQELQK ddPTM_HeLa_A485_30min_R1 3 RASPNSDDTVLSPQELQK 18 1 Q9UH62 Q9UH62 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 0 RAS(0.998)PNS(0.002)DDTVLSPQELQK;RAS(0.99)PNS(0.01)DDTVLSPQELQK;RAS(0.975)PNS(0.024)DDT(0.001)VLSPQELQK ;; 243.24 1.14E-45 924370000 788690 919350 801880 1006330 1130140 1065140 1371020 1533540 872780 1522440 TRUE FALSE FALSE 964131.3696 1026859.985 1098528.781 1061303.26 1017619.293 1120909.083 1078090.377 1157436.911 1047938.94 1142923.726 0.843565802 0.898450143 0.961156686 0.928586252 0.890365009 0.98073831 0.943274124 1.012698296 0.916893154 1 20.1242977 -1.084851058 0.300357542 0.977210616 1.18E-20 0.524257778 0.034554453 42.53206765 0.636073285 0.034916801 22.14301739 0.082252469 1.084851058 -0.977210616 RAS(ph)PNSDDTVLSPQELQK ddPTM_HeLa_A486_30min_R1 3 RASPNSDDTVLSPQELQK 18 1 Q9UH62 Q9UH62 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 0 RAS(0.929)PNS(0.071)DDTVLSPQELQK;RAS(0.954)PNS(0.046)DDTVLSPQELQK;RAS(0.644)PNS(0.352)DDT(0.005)VLSPQELQK ;; 144.63 1.02E-09 540330000 206137 238104 175973 118856 287785 236453 268696 276665 193570 331284 TRUE FALSE FALSE 191687.8608 219235.7719 244114.4583 276702.7746 251688.3218 207281.8329 201465.4188 213674.4191 210348.8035 248328.3301 0.771912978 0.882846399 0.983031047 1.11426181 1.013530441 0.834708762 0.811286488 0.860451238 0.847059227 1 17.92188933 -6.272219616 24.65730298 0.858265926 0.959827072 0.148710034 0.095651044 1071.16298 2450030.815 0.03626988 0.03231342 5.34E-07 6.272219616 0.101561146 RAS(ph)PPDPSPSPSAASASER ddPTM_HeLa_A485_30min_R1 3 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 RAS(1)PPDPSPSPSAASASER;RAS(1)PPDPSPSPSAASASER;RAS(0.999)PPDPS(0.001)PSPSAASASER ;; 83.934 0.00080624 2681100000 580620 940820 904050 710110 1071360 851410 1008420 1206860 895940 995440 TRUE FALSE FALSE 709776.9159 1050840.715 1238495.716 748901.5112 964691.6366 895988.5111 792962.829 910875.6927 1075746.94 747295.1277 0.949794652 1.406192381 1.657304684 1.002149597 1.290911182 1.198975449 1.061110664 1.218896871 1.43952088 1 19.51131859 -5.301125037 24.99991406 1.183524556 1.344607754 0.11834223 0.204345009 1141.90535 719339.108 0.057629964 0.085480105 5.00E-06 5.301125037 0.161083198 RAS(ph)PPDPSPSPSAASASER ddPTM_HeLa_A486_30min_R1 4 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 RAS(0.99)PPDPS(0.01)PSPSAASASER;RAS(1)PPDPSPSPSAASASER;RAS(0.982)PPDPS(0.018)PSPSAASASER;RAS(0.998)PPDPS(0.002)PSPSAASASER ;;; 67.31 0.0038642 2999810000 1094790 1174580 1036010 424920 1345860 1123840 1229750 1205780 1062160 1289500 TRUE FALSE FALSE 1018050.875 1081502.003 1437180.817 989235.2343 1177049.689 985192.0472 922053.543 931250.216 1154228.884 966600.8068 1.053227834 1.118871405 1.486840076 1.02341652 1.217720574 1.019233628 0.953913484 0.963427932 1.194111236 1 19.88256067 -6.268751991 23.72603958 1.019337495 1.184964292 0.248080651 0.133547147 403.2272914 1308280.536 0.046801102 0.042175006 5.39E-07 6.268751991 0.165626797 RAS(ph)PPMGMPSAWWLQNEAGCLFAAR ddPTM_HeLa_A485_30min_R1 1 RASPPMGMPSAWWLQNEAGCLFAAR 25 1 E9PL19;E9PMU7;E9PN18 E9PL19 PUF60 1 0 RAS(1)PPMGMPSAWWLQNEAGCLFAAR 117.22 9.44E-05 39139000 7914.1 8367.5 7903.6 7103.6 9945.2 11708 12981 15445 8799.2 10610 TRUE FALSE FALSE 9674.564242 9346.006337 10827.47054 7491.651681 8955.020968 12321.01278 10207.5033 11657.08953 10565.11873 7965.122263 1.214615912 1.173366338 1.359360243 0.940557023 1.12427916 1.546870515 1.281525 1.463516711 1.326422669 1 12.95948079 -6.21813247 24.9629052 1.350003099 1.161656603 0.184617099 0.164833328 669.6396735 385992.7092 0.052372404 0.052372015 6.05E-07 6.21813247 -0.188346496 RAS(ph)PPMGMPSAWWLQNEAGCLFAAR ddPTM_HeLa_A486_30min_R1 2 RASPPMGMPSAWWLQNEAGCLFAAR 25 1 E9PL19;E9PMU7;E9PN18 E9PL19 PUF60 1 0 RAS(0.985)PPMGMPS(0.015)AWWLQNEAGCLFAAR;RAS(0.999)PPMGMPS(0.001)AWWLQNEAGCLFAAR ; 119.75 4.09E-11 27811000 13792.9 12592.1 12142.4 7001 18039.2 10576.7 11935.6 12944.2 9197 13674.8 TRUE FALSE FALSE 12826.08894 11594.25614 16844.26246 16298.68181 15776.55533 9271.85429 8949.186638 9997.08823 9994.203365 10250.54107 1.251259699 1.131087233 1.643255936 1.590031365 1.539094884 0.904523403 0.873045293 0.975274199 0.974992763 1 13.32341244 -6.266326309 24.99234074 0.939489133 1.43492011 0.731399823 0.147037863 241.9444239 1237328.726 0.05728276 0.052101328 5.42E-07 6.266326309 0.495430978 RAS(ph)PPVS(ph)PIPVSEYCESENKWSQEK ddPTM_HeLa_A486_30min_R1 1 RASPPVSPIPVSEYCESENKWSQEK 25 2 A0A087WX12;A0A087X032;A0A087WTH3;A0A087X251;A0A087X0T6;Q2M2Z5-5;Q2M2Z5-2;Q2M2Z5-3;Q2M2Z5-4;Q2M2Z5 A0A087WX12 KIZ Centrosomal protein kizuna 2 0 RAS(1)PPVS(1)PIPVSEYCESENKWSQEK 81.697 0.0037581 314320000 88123 112210 57739 59127 102150 130480 173790 167120 83119 153520 TRUE FALSE FALSE 81946.03277 103318.0709 80097.0871 137650.6441 89337.39449 114382.7042 130305.9038 129070.4242 90323.82184 115077.5928 0.712093734 0.897812237 0.696026787 1.196155053 0.776323108 0.993961565 1.13233081 1.121594753 0.784894954 1 16.81224742 -5.242580785 24.99434163 1.001666303 0.781561047 0.368792286 0.138841503 933.9153582 1237768.279 0.036961333 0.063876213 5.72E-06 5.242580785 -0.220105256 RAS(ph)PS(ph)PPPK ddPTM_HeLa_A485_30min_R1 3 RASPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RAS(1)PS(1)PPPK;RAS(1)PS(1)PPPK;RAS(1)PS(1)PPPK ;; 85.813 0.0020227 1986450000 1120320 1152770 986580 1428140 1452150 1249780 1685110 1664440 1195850 1981310 TRUE FALSE FALSE 1369531.319 1287576.424 1351556.997 1506155.672 1307568.847 1315216.548 1325072.482 1256233.48 1435846.126 1487405.88 0.920751583 0.865652369 0.908667241 1.0126057 0.879093504 0.884235141 0.890861398 0.844580149 0.965335787 1 20.50436695 -7.968934045 8.440878474 0.999982075 0.902089921 0.383008722 0.04268017 0.206863522 48.13470759 0.042821675 0.011071146 1.07E-08 7.968934045 -0.097892155 RAS(ph)PS(ph)PPPK ddPTM_HeLa_A486_30min_R1 4 RASPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RAS(1)PS(1)PPPK;RAS(1)PS(1)PPPK;RAS(1)PS(1)PPPK;RAS(1)PS(1)PPPK ;;; 102.62 0.00070672 3179570000 2244810 2440590 1557100 944390 2453010 2527980 2959210 2829700 1985300 3026040 TRUE FALSE FALSE 2087460.411 2247188.76 2160050.821 2198587.647 2145330.612 2216103.53 2218784.359 2185439.082 2157387.402 2268299.888 0.920275323 0.990692973 0.952277445 0.969266744 0.945787911 0.976988776 0.978170643 0.963470083 0.951103253 1 21.11317996 RAS(ph)PS(ph)PPPKR ddPTM_HeLa_A485_30min_R1 8 RASPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR ;;;;;;; 74.769 0.0070782 25286700000 2813661 3353277 2681265 3508704 3930279 3514524 4297440 4417056 2963754 4549413 TRUE FALSE FALSE 3439550.182 3745413.576 3673176.5 3700375.615 3538966.623 3698539.042 3379256.837 3333766.09 3558552.243 3415328.065 1.007092179 1.096648259 1.075497414 1.08346125 1.036201078 1.082923506 0.98943843 0.976118846 1.041935701 1 21.70359273 -6.765249124 24.99998183 0.999883138 1.065330868 0.52046935 0.028991219 74.83935281 491096.6664 0.01144036 0.008039231 1.72E-07 6.765249124 0.06544773 RAS(ph)PS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 4 RASPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR;RAS(1)PS(1)PPPKR ;;; 72.265 0.0081054 12539177000 226322 243086 164396 87597 257552 252732 272327 256844 203229 278548 TRUE FALSE FALSE 210457.9965 223822.9801 228054.5339 203930.2429 225247.4266 221552.4954 204187.9042 198366.2281 220845.0534 208797.7678 1.007951372 1.071960598 1.092226877 0.97668785 1.078782733 1.061086514 0.977921873 0.950039985 1.057698345 1 17.67174676 -6.759858708 24.99413848 0.992251712 1.04935209 0.275333555 0.040838509 52.25917853 826361.5214 0.015981852 0.011702089 1.74E-07 6.759858708 0.057100378 RAS(ph)PS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 RASPSPPR 8 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 2 0 RAS(1)PS(1)PPR;RAS(1)PS(1)PPR ; 47.288 0.02713 709530000 73530 59315 98822 45031 92999 77475 40722 65097 60280 59362 TRUE FALSE FALSE 68375.92671 54614.66338 137088.5249 104834.4437 81334.19824 67916.92221 30532.92489 50275.83416 65505.11894 44497.36882 1.536628536 1.227368378 3.080823172 2.355969499 1.827842868 1.526313218 0.686173715 1.129860832 1.472112187 1 15.44143241 -6.373395474 2.688486624 1.086229319 2.054996337 0.435423001 0.49810214 0.291439075 4.097767449 0.209860436 0.181106685 4.23E-07 6.373395474 0.968767018 RAS(ph)PSKPAS(ph)APASR ddPTM_HeLa_A485_30min_R1 1 RASPSKPASAPASR 14 2 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 2 0 RAS(0.998)PS(0.006)KPAS(0.952)APAS(0.044)R 78.088 0.0038815 89371000 34748 29128 24715 47617 46029 38589 47855 51455 31460 64043 TRUE FALSE FALSE 42477.57272 32534.26622 33858.10698 50218.19614 41446.19114 40609.46037 37630.38831 38835.58057 37773.73343 48078.25872 0.883508967 0.676693938 0.704229061 1.044509462 0.862056827 0.84465331 0.782690333 0.807757635 0.785671828 1 15.55309703 -11.61624836 2.054929327 4.3145229 0.820526604 0.23513133 0.096676991 3930802.467 209456.9125 60804934.86 0.026167479 2.42E-12 11.61624836 -3.493996296 RAS(ph)PSKPASAPASR ddPTM_HeLa_A485_30min_R1 7 RASPSKPASAPASR 14 2 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 RAS(0.843)PS(0.157)KPASAPASR;RAS(0.995)PS(0.005)KPASAPASR;RAS(0.966)PS(0.034)KPASAPASR;RAS(0.982)PS(0.018)KPASAPASR;RAS(0.977)PS(0.023)KPASAPASR;RAS(0.975)PS(0.025)KPASAPASR;RAS(0.982)PS(0.018)KPASAPASR ;;;;;; 146.81 3.46E-08 86550100000 6817690 7014330 5636790 8036330 8927200 7547410 10279660 11384990 6944370 10436570 TRUE FALSE FALSE 8334261.62 7834594.877 7722073.187 8475334.359 8038376.623 7942580.717 8083326.664 8592803.352 8338041.361 7834925.17 1.063732128 0.999957844 0.985596291 1.081737754 1.025967249 1.013740469 1.031704386 1.096730749 1.06421455 1 22.90148807 -7.033251092 24.28255988 1.061127118 1.027120795 0.085133778 0.034611489 836.8912326 611159.9726 0.016020085 0.00925984 9.26E-08 7.033251092 -0.034006324 RAS(ph)PSKPASAPASR ddPTM_HeLa_A486_30min_R1 10 RASPSKPASAPASR 14 2 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 RAS(0.858)PS(0.138)KPAS(0.004)APASR;RAS(0.935)PS(0.064)KPAS(0.001)APASR;RAS(0.912)PS(0.088)KPASAPASR;RAS(0.805)PS(0.189)KPAS(0.003)APAS(0.002)R;RAS(0.755)PS(0.244)KPASAPASR;RAS(0.997)PS(0.003)KPASAPASR;RAS(0.557)PS(0.442)KPAS(0.001)APASR;RAS(0.997)PS(0.003)KPASAPASR;RAS(0.976)PS(0.024)KPASAPASR;RAS(0.987)PS(0.013)KPASAPASR ;;;;;;;;; 161.33 3.60E-12 74859000000 9492140 9056610 5805014 3866806 8628110 8685920 10592550 10242780 6934580 10001950 TRUE FALSE FALSE 8826790.003 8338931.24 8052870.884 9002119.786 7545891.99 7614339.502 7942181.953 7910722.592 7535674.978 7497396.618 1.177314 1.112243578 1.074088953 1.200699422 1.006468295 1.015597799 1.059325304 1.055129266 1.005105554 1 22.83795829 -5.777173474 24.9999756 1.027746535 1.13424075 0.701014192 0.037422005 145.66173 231441.8489 0.011621716 0.013221632 1.67E-06 5.777173474 0.106494215 RAS(ph)PSPPPKR ddPTM_HeLa_A486_30min_R1 2 RASPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RAS(1)PSPPPKR;RAS(0.999)PS(0.001)PPPKR ; 122.39 6.93E-05 155541000 128300 122920 104850 52412 142465 137802 154443 147422 110755 148717 TRUE FALSE FALSE 119306.8325 113179.3715 145450.728 122017.7848 124595.7113 120801.3903 115799.7279 113857.2288 120355.3326 111477.2952 1.070234368 1.015268368 1.304756522 1.094552792 1.117677918 1.083641203 1.038774108 1.021349043 1.079639871 1 16.76639038 -6.520276973 2.007955839 1.035341042 1.124682254 0.238613559 0.071911107 0.523054393 4.237498326 0.03316307 0.025416341 3.02E-07 6.520276973 0.089341212 RAS(ph)QEANLLTLAQK ddPTM_HeLa_A485_30min_R1 5 RASQEANLLTLAQK 14 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RAS(1)QEANLLTLAQK;RAS(0.999)QEANLLT(0.001)LAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK ;;;; 243.87 1.13E-35 3265619000 2930790 2757630 2438300 3721830 3951250 3004740 4240270 4050990 3224850 5049320 TRUE FALSE FALSE 3582734.124 3080110.84 3340328.636 3925144.149 3557849.676 3162063.54 3334301.675 3057478.351 3872047.815 3790617.45 0.945158453 0.812561774 0.881209639 1.035489389 0.938593705 0.834181656 0.879619671 0.806591114 1.021482085 1 21.85400144 -7.78772592 24.99029319 1.010741278 0.892729059 0.345023207 0.065606834 308.5041382 293282.5836 0.066648076 0.017229999 1.63E-08 7.78772592 -0.118012219 RAS(ph)QEANLLTLAQK ddPTM_HeLa_A486_30min_R1 5 RASQEANLLTLAQK 14 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RAS(1)QEANLLTLAQK;RAS(0.999)QEANLLT(0.001)LAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK ;;;; 257.88 7.43E-42 4258959000 4423804.1 4842067 3182781.9 1899080 5017914.2 5137650.6 5761851.1 5591012.6 4545200.7 5674615.1 TRUE FALSE FALSE 4113718.277 4458363.976 4415240.29 4421154.214 4388520.611 4503819.505 4320175.012 4318061.082 4939182.356 4253654.543 0.967102108 1.048125543 1.03798751 1.039377827 1.031705929 1.058811772 1.015638428 1.01514146 1.16116208 1 22.02027144 -4.25973575 24.19611501 1.044453581 0.967102072 0.236714459 0.042114398 138.3531114 1964715.91 0.009918243 0.061087392 5.50E-05 4.25973575 -0.07735151 RAS(ph)SASVPAVGASAEGTR ddPTM_HeLa_A486_30min_R1 2 RASSASVPAVGASAEGTR 18 1 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 RAS(0.472)S(0.472)AS(0.056)VPAVGASAEGTR;RAS(0.47)S(0.47)AS(0.06)VPAVGASAEGTR ; 72.302 0.0034658 463550000 183158 228740 199172 64849 271430 224140 273980 247470 173732 237090 TRUE FALSE FALSE 170319.57 210613.8093 276296.7324 150971.7493 237384.7184 196487.8857 205427.3061 191126.4832 188791.2296 177721.1208 0.958353004 1.185080357 1.554664584 0.849486817 1.335714727 1.105596706 1.155896976 1.075429203 1.062289214 1 17.43925562 -7.499263413 0.894325662 1.003319617 1.181592036 0.087385829 0.181141453 1.391529337 2.120642609 0.164706786 0.064000342 3.17E-08 7.499263413 0.178272419 RAS(ph)SASVPAVGASAEGTRR ddPTM_HeLa_A486_30min_R1 2 RASSASVPAVGASAEGTRR 19 2 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 RAS(0.662)S(0.166)AS(0.166)VPAVGAS(0.005)AEGTRR;RAS(0.778)S(0.109)AS(0.109)VPAVGAS(0.004)AEGTRR ; 86.791 0.0005239 1027270000 163557 148584 83304 62880 153963 124163 151199 167066 91490 168425 TRUE FALSE FALSE 152092.4989 136809.6627 115561.5398 146387.8178 134651.5249 108845.0315 113367.411 129028.7188 99420.42686 126250.2837 1.204690353 1.083638457 0.915336872 1.159504862 1.066544335 0.862136925 0.897957673 1.022007357 0.78748676 1 16.9459271 -6.208799868 7.54915789 0.914408274 1.080985113 0.458947854 0.093331354 0.279756628 35.89039288 0.030651866 0.030555245 6.18E-07 6.208799868 0.166576839 RAS(ph)SDLSIASSEEDKLSQNACILESVSEK ddPTM_HeLa_A485_30min_R1 1 RASSDLSIASSEEDKLSQNACILESVSEK 29 2 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RAS(0.482)S(0.482)DLS(0.01)IAS(0.01)S(0.015)EEDKLSQNACILESVSEK 200.68 6.65E-29 293700000 299450 220560 137400 444010 324550 309190 451330 397830 242730 578280 TRUE FALSE FALSE 366061.6194 246352.5734 188229.9777 468265.142 292236.6624 325378.7103 354899.6585 300261.5687 291443.6845 434125.4385 0.843216239 0.567468643 0.433584308 1.078640182 0.673161802 0.749503903 0.817504866 0.691647027 0.671335192 1 18.72775244 -11.24382515 2.089788676 1.89470407 0.72322638 0.204354895 0.162679106 29898574.11 4925997.358 126246032.9 0.044147271 5.70E-12 11.24382515 -1.171477691 RAS(ph)SDLSIASSEEDKLSQNACILESVSEK ddPTM_HeLa_A486_30min_R1 1 RASSDLSIASSEEDKLSQNACILESVSEK 29 2 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RAS(0.448)S(0.448)DLS(0.091)IAS(0.006)S(0.006)EEDKLSQNACILESVSEK 247.36 9.55E-51 247450000 269400 257320 121300 164130 220730 365520 445720 365280 207820 382270 TRUE FALSE FALSE 250516.4512 236929.0261 168270.6085 382102.9347 193043.9852 320425.8587 334196.1417 282113.718 225834.0049 286547.1038 0.874259233 0.826841461 0.587235419 1.333473379 0.673690233 1.118231015 1.166286929 0.984528248 0.78812175 1 18.12841279 -5.236427593 24.99997647 1.00565553 0.769185021 0.265919991 0.187459624 1096.128876 1095609.869 0.049511349 0.085711442 5.80E-06 5.236427593 -0.236470509 RAS(ph)SGLPR ddPTM_HeLa_A485_30min_R1 2 RASSGLPR 8 1 Q9UJZ1;Q9UJZ1-2 Q9UJZ1 STOML2 "Stomatin-like protein 2, mitochondrial" 1 0 RAS(0.986)S(0.014)GLPR;RAS(0.972)S(0.028)GLPR ; 68.484 0.010542 205543000 61953 76450 64886 100386 97440 87157 101347 125573 72313 133169 TRUE FALSE FALSE 75734.23111 85390.16247 88890.03153 105869.833 87738.53147 91720.40575 79693.38552 94776.02486 86825.55581 99972.41909 0.757551251 0.854137204 0.88914555 1.058990409 0.877627372 0.9174571 0.797153717 0.948021722 0.868495097 1 16.60924251 -1.000000239 0.017841256 1.616855685 3.61E-06 0.186126532 0.076748139 8415.953472 11.60712572 402.97928 682.9452814 0.099999945 1.000000239 -1.616852076 RAS(ph)SLNVLNVGGK ddPTM_HeLa_A485_30min_R1 3 RASSLNVLNVGGK 13 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 RAS(0.5)S(0.5)LNVLNVGGK;RAS(0.655)S(0.345)LNVLNVGGK;RAS(0.5)S(0.5)LNVLNVGGK ;; 168.69 3.13E-12 3531610000 3228526 4355768 3451146 3251273 4921530 4828500 5697070 6848380 3478664 4353730 TRUE FALSE FALSE 3946700.47 4865137.177 4727868.52 3428881.811 4431525.193 5081312.794 4479844.454 5168804.067 4176799.957 3268425.235 1.207523558 1.488526378 1.44652797 1.049092931 1.355859435 1.554666981 1.370643087 1.581435613 1.277924277 1 21.64016427 -8.017502542 23.90308377 0.999999986 1.383984524 0.369083169 0.150738177 703.2345234 960402.7011 0.148519597 0.038347595 9.61E-09 8.017502542 0.383984539 RAS(ph)SLNVLNVGGK ddPTM_HeLa_A486_30min_R1 3 RASSLNVLNVGGK 13 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 RAS(0.824)S(0.176)LNVLNVGGK;RAS(0.677)S(0.323)LNVLNVGGK;RAS(0.5)S(0.5)LNVLNVGGK ;; 193.64 5.39E-18 3031880000 5689070 5415080 4109040 2304671 6691440 5369430 6794440 6902940 4319070 6730960 TRUE FALSE FALSE 5290295.571 4985969.339 5700170.332 5365390.56 5852137.2 4707004.319 5094399.248 5331291.252 4693450.465 5045483.805 1.04852097 0.988204409 1.129756938 1.063404575 1.159876322 0.932914365 1.009694896 1.056646193 0.930228031 1 22.26656118 -6.272922509 24.99957534 0.990924475 1.075036423 0.408963875 0.055112238 861.3835514 1875287.194 0.019567393 0.017394593 5.33E-07 6.272922509 0.084111948 RAS(ph)SPFR ddPTM_HeLa_A486_30min_R1 2 RASSPFR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 RAS(0.5)S(0.5)PFR;RAS(0.5)S(0.5)PFR ; 76.943 0.0089778 1422980000 277800 295640 271150 91672 321780 270710 317230 282400 260234 257220 TRUE FALSE FALSE 258327.6546 272212.4097 376146.5416 213417.0488 281419.3519 237312.5526 237855.6987 218103.6847 282791.2927 192810.4378 1.339801193 1.411813659 1.950861924 1.106874977 1.459564924 1.230807602 1.233624597 1.131181938 1.466680414 1 17.55682363 -5.304888924 24.99998998 1.247557597 1.551925592 0.361467599 0.202937154 515.8330638 296798.8985 0.05568473 0.082594276 4.96E-06 5.304888924 0.304367995 RAS(ph)WAS(ph)ENGETDAEGTQMTPAK ddPTM_HeLa_A485_30min_R1 2 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 0 RAS(1)WAS(0.972)ENGET(0.028)DAEGTQMTPAK;RAS(1)WAS(0.989)ENGET(0.011)DAEGTQMTPAK ; 131.81 7.01E-07 925740000 124860 137920 113750 163250 179870 137810 185960 166850 131590 225000 TRUE FALSE FALSE 152634.6762 154048.5443 155830.8585 172167.9341 161961.5112 145025.5185 146228.1268 125929.7759 157998.906 168911.6408 0.903636218 0.912006677 0.922558432 1.019278087 0.95885346 0.858588063 0.865707811 0.745536396 0.935393826 1 17.36590923 -6.26526233 24.54897374 0.864182652 0.944602325 0.150287072 0.068289194 385.5692332 2475910.583 0.023332395 0.021352389 5.43E-07 6.26526233 0.080419673 RAS(ph)WAS(ph)ENGETDAEGTQMTPAK ddPTM_HeLa_A486_30min_R1 3 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 0 RAS(1)WAS(1)ENGETDAEGTQMTPAK;RAS(1)WAS(1)ENGETDAEGTQMTPAK;RAS(0.97)WAS(0.72)ENGET(0.31)DAEGTQMTPAK ;; 224.14 2.26E-36 1082960000 994720 976370 617720 346343 968080 959500 1085600 1028710 833870 1137790 TRUE FALSE FALSE 924995.2647 898998.8853 856917.7271 806304.0072 846654.3794 841126.6455 813971.3977 794495.1896 906150.523 852879.9782 1.084555023 1.054074323 1.004734252 0.945389771 0.992700498 0.986219242 0.95437977 0.931543957 1.062459603 1 19.70198321 -4.750147451 2.511815341 0.978201345 1.079686916 0.505460328 0.034425729 0.217324546 2.682644685 0.009115924 0.030334155 1.78E-05 4.750147451 0.101485571 RAS(ph)WASENGETDAEGTQMTPAK ddPTM_HeLa_A486_30min_R1 2 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 RAS(0.999)WAS(0.001)ENGETDAEGTQMTPAK;RAS(0.949)WAS(0.051)ENGETDAEGTQMTPAK ; 182.97 1.03E-19 1100940000 705890 672400 460730 271420 712320 687330 819520 779500 602420 891070 TRUE FALSE FALSE 656410.7562 619116.5752 639136.9948 631879.4768 622974.1835 602534.2129 614467.428 602024.8664 654638.2506 667940.2721 0.982738702 0.926904098 0.956877466 0.946011946 0.932679477 0.902077982 0.919943674 0.901315419 0.980085014 1 19.34935958 -7.937022596 6.199281566 0.999796028 0.93314577 0.495143862 0.023220167 0.147860025 9.936203601 0.023242835 0.006030947 1.16E-08 7.937022596 -0.066650258 RAS(ph)YDYNQDR ddPTM_HeLa_A486_30min_R1 2 RASYDYNQDR 10 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 RAS(1)YDYNQDR;RAS(0.999)Y(0.001)DYNQDR ; 77.42 0.0054509 670020000 305660 524350 739200 129212 801510 302780 365710 386020 470300 242829 TRUE FALSE FALSE 284234.8124 482798.5964 1025438.036 300812.066 700977.142 265426.082 274205.4899 298131.6728 511065.9827 182023.0378 1.561532077 2.652403795 5.63356182 1.65260436 3.851035288 1.458200485 1.506432884 1.637878789 2.807699447 1 17.47376153 -6.274398162 24.36977276 1.710934068 3.110665679 0.262964272 1.160528692 804.5132985 1512930.726 0.406324694 0.360714241 5.32E-07 6.274398162 1.39973161 RASEDTTS(ph)GSPPKK ddPTM_HeLa_A485_30min_R1 1 RASEDTTSGSPPKK 14 2 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 RASEDT(0.027)T(0.135)S(0.476)GS(0.362)PPKK 54.368 0.01933 636480000 412050 368090 263750 660690 456160 505020 704160 668930 371350 941450 TRUE FALSE FALSE 503709.1009 411134.9235 361322.1006 696781.8217 410743.1087 531462.0663 553710.4635 504873.8687 445876.5388 706763.8411 0.712697894 0.581714711 0.511234559 0.985876443 0.581160332 0.751965558 0.78344481 0.714345923 0.630870615 1 19.43086871 -14 0.237907378 2.679208638 0.665915873 0.33660444 0.12719229 199.7806469 1.996185808 162.5307548 0.204705835 1.00E-14 14 -2.013292766 RASEDTTS(ph)GSPPKK ddPTM_HeLa_A486_30min_R1 1 RASEDTTSGSPPKK 14 2 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 RAS(0.004)EDT(0.112)T(0.112)S(0.699)GS(0.074)PPKK 57.52 0.025273 589650000 63442 54123 23574 37965 53172 68043 92167 81885 41989 114810 TRUE FALSE FALSE 58995.04341 49834.09637 32702.48413 88384.43864 46502.67195 59648.54647 69105.84176 63241.57304 45628.64033 86060.82871 0.685504013 0.579056664 0.379992671 1.026999623 0.540346551 0.693097514 0.802988337 0.734847363 0.530190576 1 16.39306911 -14 0.226810405 2.708484972 0.629593285 0.255448852 0.168269488 225.6579299 2.259733473 177.3838749 0.298699681 1.00E-14 14 -2.078891686 RASEDTTSGS(ph)PPK ddPTM_HeLa_A485_30min_R1 1 RASEDTTSGSPPK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 RASEDTT(0.002)S(0.021)GS(0.976)PPK 66.068 0.0092238 177500000 143790 169130 130760 197390 202030 178480 252370 281400 148780 285620 TRUE FALSE FALSE 175775.5894 188908.2823 179133.5654 208172.9159 181915.1838 187824.9368 198449.0878 212386.2088 178638.7813 214420.1904 0.819771632 0.881019096 0.835432358 0.970864336 0.848405103 0.875966654 0.925514931 0.990514039 0.833124814 1 17.71008124 -1.000026983 0.022430456 1.578879215 2.29E-05 0.34808386 0.05264046 2756.669193 4.771037659 120.0691974 232.9476141 0.099993787 1.000026983 -1.578856322 RASEDTTSGS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 RASEDTTSGSPPK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 RASEDT(0.002)T(0.006)S(0.082)GS(0.91)PPK 52.172 0.028859 95855000 85572 70247 45229 44968 66164 83128 98781 103830 59840 143940 TRUE FALSE FALSE 79573.84469 64680.37188 62742.88007 104687.7766 57865.09417 72872.51254 74064.949 80190.17559 65026.97938 107896.4871 0.737501719 0.599466893 0.581509943 0.970261214 0.536301929 0.675392819 0.686444489 0.743213961 0.602679301 1 16.71928837 -10.41824851 3.824081863 1.001894682 0.682085531 0.40459687 0.11593798 77959462.74 3302.571962 1300928.808 0.027043907 3.82E-11 10.41824851 -0.319809151 RASEDTTSGS(ph)PPKK ddPTM_HeLa_A485_30min_R1 3 RASEDTTSGSPPKK 14 2 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 RAS(0.002)EDT(0.042)T(0.01)S(0.034)GS(0.913)PPKK;RASEDTTS(0.005)GS(0.995)PPKK;RASEDTT(0.007)S(0.032)GS(0.961)PPKK ;; 127.59 1.11E-05 3470660000 762280 592900 382739 1263660 835870 795310 1371380 1246200 630990 1755860 TRUE FALSE FALSE 931846.5562 662234.4975 524330.0832 1332690.546 752647.8479 836951.2018 1078373.46 940567.496 757623.9052 1318156.416 0.7069317 0.502394473 0.397775315 1.011026104 0.570985233 0.634940734 0.818092183 0.713547713 0.574760245 1 20.33009014 -14 0.162834323 2.238512479 0.574485148 0.280977855 0.162528513 178.7875786 1.65512309 71.95699843 0.667222985 1.00E-14 14 -1.664027331 RASEDTTSGS(ph)PPKK ddPTM_HeLa_A486_30min_R1 3 RASEDTTSGSPPKK 14 2 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 RASEDT(0.001)T(0.009)S(0.076)GS(0.915)PPKK;RASEDT(0.182)T(0.182)S(0.133)GS(0.503)PPKK;RAS(0.001)EDT(0.063)T(0.063)S(0.052)GS(0.821)PPKK ;; 68.243 0.0081113 2211850000 955210 867220 402262 658030 766580 1069300 1387140 1268870 604128 1622250 TRUE FALSE FALSE 888254.7117 798498.3288 558028.6193 1531927.095 670428.3883 937380.6378 1040062.9 979976.0002 656494.3015 1216028.041 0.73045578 0.656644668 0.458894533 1.259779416 0.551326422 0.770854459 0.855295162 0.805882732 0.539867733 1 20.21374507 -11.46786717 2.17739365 3.688805948 0.742520012 0.121177362 0.212292182 17254289.06 1103381.578 229561501 0.057304951 3.41E-12 11.46786717 -2.946285936 RASGQAFELILS(ph)PR ddPTM_HeLa_A485_30min_R1 6 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR ;;;;; 150.7 3.20E-08 4067210000 459724 699606 629125 403844 761827 606865 669385 828830 500279 541374 TRUE FALSE FALSE 561988.0178 781418.8359 861864.5176 425904.9751 685976.8289 638639.513 526365.4264 625558.1429 600680.4065 406419.4251 1.382778438 1.922690668 2.120628259 1.047944436 1.687854435 1.571380386 1.295128613 1.539193514 1.477981537 1 18.63260983 -11.27946895 0.113057585 5.94E-11 1.976365174 0.302091976 0.279095582 91.04195734 1.343646936 27.75759752 4.060214152 5.25E-12 11.27946895 1.976365174 RASGQAFELILS(ph)PR ddPTM_HeLa_A486_30min_R1 6 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR ;;;;; 186.89 9.25E-18 3854790000 732869 649439 609274 277381.5 819086 595690 701900 727519 538677 693405 TRUE FALSE FALSE 681498.6676 597975.0884 845201.2097 645758.1501 716348.5962 522199.8243 526277.1961 561878.8053 585369.9561 519771.8747 1.311149565 1.150456801 1.626100316 1.242387635 1.378198073 1.004671183 1.012515724 1.081010406 1.126205523 1 18.98751904 -6.260684329 24.99962871 1.047920908 1.341323448 0.607506602 0.119260357 48.92891971 1620050.733 0.040289637 0.038080227 5.49E-07 6.260684329 0.29340254 RASHT(ph)LLPSHR ddPTM_HeLa_A485_30min_R1 2 RASHTLLPSHR 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RAS(0.391)HT(0.609)LLPSHR;RAS(0.23)HT(0.77)LLPSHR ; 115.24 0.0003077 837520000 356376 497960 486730 322637 525910 381948 410420 502320 335267 367285 TRUE FALSE FALSE 435650.6117 556192.0903 666791.6815 340261.8423 473548.5538 401946.2067 322730.4142 379125.2324 402552.0116 275727.6089 1.580003589 2.017179537 2.418298567 1.234050677 1.717450624 1.45776554 1.170468258 1.374999167 1.459962654 1 18.07288421 -5.2774669 24.95885021 1.373532244 2.006362485 0.570550137 0.261659004 571.8313676 890482.8552 0.073982462 0.110123063 5.28E-06 5.2774669 0.632830241 RASHT(ph)LLPSHR ddPTM_HeLa_A486_30min_R1 1 RASHTLLPSHR 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RAS(0.381)HT(0.619)LLPSHR 69.345 0.011867 179790000 78582 90413 87374 22714 108970 77067 92953 81436 73317 79040 TRUE FALSE FALSE 73073.8076 83248.3446 121207.5528 52879.3399 95301.9665 67559.2571 69695.17624 62894.80054 79672.17659 59247.86954 1.233357556 1.405085875 2.045770653 0.892510403 1.608529847 1.140281627 1.176332192 1.061553791 1.344726439 1 15.85447566 -6.117649858 1.077114416 1.136394391 1.480775166 0.183939224 0.288752561 0.860125665 2.108769664 0.144279858 0.149866779 7.63E-07 6.117649858 0.344380775 RASLS(ph)DLTDLEDIEGLTVR ddPTM_HeLa_A485_30min_R1 1 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 RAS(0.314)LS(0.685)DLT(0.001)DLEDIEGLTVR 134.81 1.36E-06 55951000 20452 18081 16539 18144 20670 20418 25150 24891 17581 33055 TRUE FALSE FALSE 25001.47684 20195.41567 22657.46435 19135.16078 18612.02222 21487.05491 19776.49704 18786.44322 21109.34544 24814.99683 1.007514811 0.813839139 0.913055299 0.771112763 0.750031215 0.865889891 0.796957468 0.757060069 0.850668875 1 14.59892465 RASLS(ph)DLTDLEDIEGLTVR ddPTM_HeLa_A486_30min_R1 1 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;J3KSU7;K7EN88;Q8WZ73-3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 RAS(0.408)LS(0.592)DLTDLEDIEGLTVR 129.78 2.37E-06 9426300 9142.4 7402.8 8338.6 4055.9 14223 9213.3 9417.1 9894.5 8547 12155 TRUE FALSE FALSE 8501.564971 6816.175167 11567.52924 9442.340174 12439.01872 8076.65672 7060.841976 7641.738345 9287.860842 9111.308884 0.93307834 0.748100548 1.269579309 1.036331914 1.365228517 0.886443081 0.774953639 0.838709174 1.019377233 1 13.1534426 -6.436020046 24.99999995 0.885604949 1.068132245 0.186086663 0.172029807 128.8629411 37087.00088 0.063121364 0.055667795 3.66E-07 6.436020046 0.182527296 RASPS(ph)KPASAPASR ddPTM_HeLa_A485_30min_R1 1 RASPSKPASAPASR 14 2 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 RAS(0.346)PS(0.391)KPAS(0.26)APAS(0.002)R 129.87 1.47E-05 1628600000 796720 826570 663630 933730 1025200 890330 1193000 1284700 814810 1203300 TRUE FALSE FALSE 973947.6153 923230.1713 909134.3529 984737.3056 923127.4883 936946.3021 938105.8041 969625.3107 978334.8931 903339.4551 1.078163485 1.022019094 1.006414973 1.090107711 1.021905423 1.0372029 1.038486472 1.073378679 1.083020217 1 19.7849087 -7.230245426 23.91634432 1.058649595 1.040790392 0.007494212 0.031604502 1172.990984 899331.3058 0.014385701 0.008304027 5.89E-08 7.230245426 -0.017859202 RASS(ph)ASVPAVGASAEGTRR ddPTM_HeLa_A485_30min_R1 1 RASSASVPAVGASAEGTRR 19 2 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 RAS(0.446)S(0.538)AS(0.015)VPAVGASAEGTRR 44.711 0.026136 402390000 176170 246510 204180 163440 238530 242960 250140 303610 224760 213030 TRUE FALSE FALSE 215358.4087 275337.2001 279714.6786 172368.3133 214781.1157 255681.0099 196695.5455 229149.1715 269867.2704 159925.5415 1.346616723 1.721658701 1.74903068 1.077803531 1.343006962 1.598750315 1.229919522 1.43284912 1.687455723 1 17.28704084 -10.59994728 3.025630003 0.971539331 1.462185079 0.302428105 0.211924614 62846522.65 68804371.23 14264914.33 0.057449751 2.51E-11 10.59994728 0.490645748 RASS(ph)LNFLNK ddPTM_HeLa_A485_30min_R1 2 RASSLNFLNK 10 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 RAS(0.002)S(0.998)LNFLNK;RAS(0.162)S(0.838)LNFLNK ; 168.61 8.88E-07 1444400000 1400740 1614370 1347250 1373260 2024840 1690630 2066230 2476700 1440770 1678430 TRUE FALSE FALSE 1712329.781 1803156.528 1845653.839 1448277.717 1823239.82 1779148.773 1624763.081 1869285.442 1729919.323 1260028.29 1.358961377 1.431044479 1.464771746 1.149400952 1.446983242 1.411991133 1.289465557 1.483526565 1.372921018 1 20.26502469 -9.905081458 5.79690734 0.999999829 1.379540644 0.595041761 0.093742584 2.02E-07 3.81E-08 0.088801728 0.021537573 1.24E-10 9.905081458 0.379540814 RASS(ph)LNFLNK ddPTM_HeLa_A486_30min_R1 2 RASSLNFLNK 10 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 RAS(0.089)S(0.911)LNFLNK;RAS(0.01)S(0.99)LNFLNK ; 166.62 1.07E-06 1621990000 2427000 2525200 1662280 951700 2724300 2291200 2813500 2844300 1798960 2655500 TRUE FALSE FALSE 2256879.833 2325093.955 2305959.333 2215605.696 2382592.891 2008535.039 2109532.542 2196714.981 1954895.301 1990545.516 1.133799662 1.168068721 1.158455969 1.113064574 1.19695474 1.009037484 1.059776089 1.103574354 0.982090229 1 20.92473243 -6.265743414 24.99993996 1.039174055 1.152812238 0.722576367 0.037983887 213.6750373 1241124.536 0.012826122 0.011695602 5.42E-07 6.265743414 0.113638183 RASS(ph)LNVLNVGGK ddPTM_HeLa_A485_30min_R1 1 RASSLNVLNVGGK 13 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;H0YJK1 Q07866-4 KLC1 Kinesin light chain 1 1 0 RAS(0.329)S(0.671)LNVLNVGGK 133.96 8.34E-06 178960000 289970 402870 318730 290040 448610 422380 528590 604580 329450 396160 TRUE FALSE FALSE 354472.8261 449982.142 436641.4905 305884.1508 403944.8132 444495.1637 415652.4283 456305.8071 395567.5931 297404.6028 1.191887492 1.513030188 1.468173278 1.028511825 1.358233227 1.494580647 1.397599178 1.534293023 1.330065471 1 18.18206745 -8.03812654 22.07099019 0.999999993 1.377606661 0.357947035 0.148966177 1617.960791 936617.9442 0.147312695 0.038035974 9.16E-09 8.03812654 0.377606668 RASS(ph)PFR ddPTM_HeLa_A485_30min_R1 6 RASSPFR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 RAS(0.12)S(0.88)PFR;RAS(0.476)S(0.524)PFR;RAS(0.111)S(0.889)PFR;RAS(0.293)S(0.707)PFR;RAS(0.086)S(0.914)PFR;RAS(0.178)S(0.822)PFR ;;;;; 117.71 0.0013438 10757000000 474232 657781 642302 504809 747540 598597 674640 708505 607359 657955 TRUE FALSE FALSE 579723.2723 734702.766 879916.2382 532385.4374 673112.2928 629938.6133 530497.6527 534743.0379 729250.3803 493938.9273 1.173673991 1.487436453 1.781427196 1.077836567 1.362743966 1.275337048 1.074014667 1.082609627 1.47639787 1 18.91397315 -5.287232844 24.92081655 1.201730189 1.481505062 0.314899395 0.194442779 865.7457459 836453.784 0.054670582 0.081119494 5.16E-06 5.287232844 0.279774873 RASS(ph)PFR ddPTM_HeLa_A486_30min_R1 4 RASSPFR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 RAS(0.088)S(0.912)PFR;RAS(0.339)S(0.661)PFR;RAS(0.094)S(0.906)PFR;RAS(0.122)S(0.878)PFR ;;; 102.06 0.0023974 8646050000 433173 485182 469411 152607 518229 428021 462621 469489 430159 473939 TRUE FALSE FALSE 402809.8096 446734.4113 651179.5105 355276.8083 453227.8865 375216.1208 346868.3327 362596.6036 467445.5285 355261.5896 1.133840025 1.25748019 1.832957825 1.000042838 1.275758201 1.056168558 0.976374432 1.020646797 1.315778407 1 18.43852219 RASSDLSIAS(ph)SEEDKLSQNACILESVSEK ddPTM_HeLa_A485_30min_R1 1 RASSDLSIASSEEDKLSQNACILESVSEK 29 2 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RAS(0.132)S(0.132)DLS(0.189)IAS(0.272)S(0.272)EEDKLS(0.005)QNACILESVSEK 169.36 1.62E-14 191240000 160260 102550 75191 231140 170290 154100 237190 216440 120240 322880 TRUE FALSE FALSE 195909.2841 114542.3304 103007.2799 243766.5929 153335.3297 162168.4377 186512.4188 163357.7506 144371.0651 242391.9582 0.808233431 0.472550044 0.424961623 1.005671124 0.632592479 0.669033903 0.769466199 0.673940472 0.595609962 1 17.88698231 -11.09030747 2.438308133 1.546911703 0.670717459 0.280485071 0.157362655 13687465.64 4177647.392 41558720.63 0.040603295 8.12E-12 11.09030747 -0.876194244 RASSDLSIAS(ph)SEEDKLSQNACILESVSEK ddPTM_HeLa_A486_30min_R1 1 RASSDLSIASSEEDKLSQNACILESVSEK 29 2 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RAS(0.14)S(0.14)DLS(0.191)IAS(0.264)S(0.264)EEDKLS(0.002)QNACILESVSEK 124.55 2.62E-06 274650000 84762 93824 54170 40915 83739 109410 125000 124980 72306 122610 TRUE FALSE FALSE 78820.62151 86389.04454 75146.07472 95252.18773 73235.67378 95912.1066 93723.67788 96524.78229 78573.5423 91907.65794 0.857606681 0.939954803 0.817625826 1.03639011 0.796839735 1.043570348 1.01975918 1.050236558 0.854918339 1 16.48789745 -6.282296662 24.97734112 0.998465563 0.896623443 0.291399981 0.080565696 1051.002903 1258609.348 0.026920328 0.023766687 5.22E-07 6.282296662 -0.10184212 RASSDLSIASSEEDKLS(ph)QNACILESVSEK ddPTM_HeLa_A486_30min_R1 1 RASSDLSIASSEEDKLSQNACILESVSEK 29 2 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RAS(0.052)S(0.052)DLS(0.06)IAS(0.06)S(0.06)EEDKLS(0.715)QNACILESVSEK 49.001 0.016331 109750000 176810 169080 75643 96498 154510 192210 263500 240630 125070 246990 TRUE FALSE FALSE 164416.532 155681.485 104933.9954 224652.2207 135129.9151 168497.0844 197569.513 185843.8019 135911.1683 185142.0964 0.888055906 0.840875674 0.566775452 1.213404326 0.729871367 0.910096017 1.067123668 1.003790092 0.734091117 1 17.49827344 -5.248333626 24.99880296 0.945250466 0.772799715 0.227076815 0.156767538 1277.529243 2436842.174 0.041733509 0.071707551 5.65E-06 5.248333626 -0.172450751 RASVFVK ddPTM_HeLa_A485_30min_R1 2 RASVFVK 7 1 F6VDH7;Q3KNR6;P50502;H7C3I1;Q8IZP2;Q8NFI4 F6VDH7 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 0 0 ; ; 105.14 0.0086167 50568000 70705 91907 79433 75468 110252 95791 122467 135320 82042 100191 FALSE FALSE TRUE 86433.08332 102654.7242 108818.5722 79590.62574 99274.92376 100806.4686 96300.92499 102132.5578 98507.07687 75215.22758 1.149143413 1.36481305 1.44676252 1.058171707 1.319877995 1.34024016 1.280338145 1.357870755 1.309669332 1 16.19873715 -9.971545395 5.477290784 0.999999318 1.295551046 0.405244932 0.105995143 8.76E-07 1.64E-07 0.100930633 0.024479217 1.07E-10 9.971545395 0.295551728 RASVFVK ddPTM_HeLa_A486_30min_R1 1 RASVFVK 7 1 F6VDH7;Q3KNR6;P50502;H7C3I1;Q8IZP2;Q8NFI4 F6VDH7 ST13;ST13P4;ST13P5 Hsc70-interacting protein;Putative protein FAM10A4;Putative protein FAM10A5 0 0 93.429 0.018252 11920000 18209 18625 14392 6034.5 23100 16998 21403 22484 15271 24321 FALSE FALSE TRUE 16932.64313 17149.08717 19964.96783 14048.62097 20202.5826 14900.95958 16047.74302 17364.88402 16594.70258 18230.8633 0.928789979 0.940662375 1.095119167 0.770595486 1.108152822 0.817347996 0.880251404 0.952499272 0.910253251 1 14.15409526 RAT(ph)ISSPLELEGTVSR ddPTM_HeLa_A485_30min_R1 2 RATISSPLELEGTVSR 16 1 Q96GS4 Q96GS4 C17orf59 Uncharacterized protein C17orf59 1 0 RAT(0.975)IS(0.025)SPLELEGTVSR;RAT(0.997)IS(0.002)S(0.001)PLELEGTVSR ; 118.36 7.56E-05 239649000 35158 36747 44963 33072 51541 36840 56131 65205 39876 35832 TRUE FALSE FALSE 42978.77581 41044.24199 61596.68477 34878.63962 46409.39707 38768.88543 44138.1533 49213.37151 47878.74744 26899.74184 1.597739341 1.525822896 2.289861558 1.296616147 1.725272954 1.441236338 1.64083929 1.829510923 1.779896169 1 14.71530471 RAT(ph)ISSPLELEGTVSR ddPTM_HeLa_A486_30min_R1 2 RATISSPLELEGTVSR 16 1 Q96GS4 Q96GS4 C17orf59 Uncharacterized protein C17orf59 1 0 RAT(0.995)IS(0.005)SPLELEGTVSR;RAT(0.994)IS(0.006)SPLELEGTVSR ; 133.65 9.59E-06 216200000 40425 59778 55628 20663 61279 41191 53947 57268 37740 51699 TRUE FALSE FALSE 37591.41625 55040.97357 77168.65137 48104.50825 53592.81642 36109.27322 40448.89001 44229.32655 41011.33359 38753.2339 0.970020111 1.42029369 1.991282884 1.241303071 1.382925011 0.931774451 1.043755216 1.141306727 1.058268678 1 15.24202909 -6.159757937 4.747495016 1.045155769 1.433376269 0.359392998 0.242678992 0.26676964 9.71926474 0.08511985 0.085109287 6.92E-07 6.159757937 0.3882205 RAT(ph)LDEEDLVDSLSEGDAYPNGLQVNFHSPR ddPTM_HeLa_A485_30min_R1 2 RATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 31 1 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 RAT(1)LDEEDLVDSLSEGDAYPNGLQVNFHSPR;RAT(1)LDEEDLVDSLSEGDAYPNGLQVNFHSPR ; 285.81 4.28E-78 205378000 46634 56927 42684 60456 59239 50729 70329 78258 53595 95232 TRUE FALSE FALSE 57007.57241 63584.11745 58474.58783 63758.5582 53340.95716 53385.092 55302.63461 59065.1028 64351.0249 71492.41502 0.797393296 0.889382705 0.81791317 0.891822695 0.746106523 0.746723859 0.773545482 0.826172997 0.900109821 1 16.12550257 -7.994751582 2.324184618 0.999039334 0.810223781 0.612725447 0.047700542 0.212791021 2.663151043 0.04978078 0.013687071 1.01E-08 7.994751582 -0.188815553 RAT(ph)LDEEDLVDSLSEGDAYPNGLQVNFHSPR ddPTM_HeLa_A486_30min_R1 1 RATLDEEDLVDSLSEGDAYPNGLQVNFHSPR 31 1 E9PN99;E9PHZ1;B4DKB2;A0A3B3ISF9;P42892-3;P42892-4;P42892 E9PN99 ECE1 Endothelin-converting enzyme 1 1 0 RAT(1)LDEEDLVDSLSEGDAYPNGLQVNFHSPR 250.61 2.88E-51 154420000 12960 14721 12767 4670.4 22581 15330 17130 17124 16412 19317 TRUE FALSE FALSE 12051.57093 13554.45435 17710.72431 10872.92723 19748.68042 13438.74046 12843.89282 13225.23901 17834.60537 14479.89747 0.832296703 0.93608773 1.223124981 0.750898082 1.363868803 0.928096383 0.887015453 0.913351703 1.231680363 1 13.82176377 -4.526120772 24.97307329 1.029885016 0.858244385 0.117602232 0.177020048 171.6405484 1322147.2 0.043191988 0.115608525 2.98E-05 4.526120772 -0.171640631 RAT(ph)PEPGDEGEPGR ddPTM_HeLa_A486_30min_R1 1 RATPEPGDEGEPGR 14 1 M0QZR4;M0QYC1;M0QZH8;M0QYS3 M0QZR4 ARHGEF1 1 0 RAT(1)PEPGDEGEPGR 80.156 0.0042152 121720000 86554 118280 106610 34244 128860 106370 119840 107620 90235 105490 TRUE FALSE FALSE 80487.01157 108907.062 147892.2471 79721.7626 112697.1772 93247.15089 89854.76446 83117.27533 98056.64245 79074.61738 1.017861537 1.377269542 1.87028723 1.008183982 1.425200412 1.179229872 1.136328792 1.051124597 1.240052064 1 16.27092705 -6.371845596 1.276938682 1.099508377 1.370374212 0.17683466 0.233140476 0.781840968 2.594185013 0.121213352 0.099282005 4.25E-07 6.371845596 0.270865834 RAT(ph)PPAHPPPR ddPTM_HeLa_A486_30min_R1 1 RATPPAHPPPR 11 1 Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3;Q5SQI0-2;Q5SQI0 Q5SQI0-7 ATAT1 Alpha-tubulin N-acetyltransferase 1 1 0 RAT(1)PPAHPPPR 58.21 0.028371 19212000 25529 16416 13197 13213 27352 12891 12795 15511 13277 13470 TRUE FALSE FALSE 23739.54893 15115.13637 18307.23183 30760.53175 23921.25711 11300.63949 9593.555668 11979.4839 14427.86105 10097.02433 2.351143086 1.496989201 1.813131398 3.046494765 2.369139297 1.119204938 0.950136927 1.186437065 1.428922085 1 13.30164256 -6.266594771 24.29288203 1.136917234 2.199294941 0.651639347 0.39416675 209.3893785 986666.3143 0.150245413 0.136600676 5.41E-07 6.266594771 1.062377706 RAT(ph)SPSSSVSGDFDDGHHSVSTPGPSR ddPTM_HeLa_A485_30min_R1 1 RATSPSSSVSGDFDDGHHSVSTPGPSR 27 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5;C9J409 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RAT(0.606)S(0.388)PS(0.005)SS(0.001)VSGDFDDGHHSVSTPGPSR 156.28 1.22E-09 699330000 75819 172390 197880 61483 237530 138460 148660 198220 153210 95557 TRUE FALSE FALSE 92684.67498 192549.5109 271084.0465 64841.66061 213880.6792 145709.5515 116897.5766 149606.2342 183957.8417 71736.3985 1.292017399 2.684125701 3.778891221 0.903887872 2.981480583 2.03118019 1.629543426 2.085499653 2.564358478 1 16.1304177 -10.73345591 0.333486372 6.60E-11 2.318639633 0.164589077 0.800583035 52.27165082 3.080249003 44.30369051 0.692837624 1.85E-11 10.73345591 2.318639633 RAT(ph)TPLYHGFK ddPTM_HeLa_A485_30min_R1 1 RATTPLYHGFK 11 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RAT(0.5)T(0.5)PLYHGFK 63.29 0.0090069 0 101180 118560 108200 117810 139430 122630 144050 155570 105350 156930 TRUE FALSE FALSE 123687.1419 132424.5607 148227.6826 124245.662 125547.8596 129050.7172 113272.5407 117416.2136 126492.7787 117810.2391 1.049884483 1.124049673 1.258190152 1.054625328 1.065678676 1.095411725 0.961482988 0.996655422 1.073699363 1 16.84610541 -6.033998701 1.269403257 1.013951495 1.135762859 0.377618405 0.061953478 0.471812686 1.577859404 0.028520653 0.031430807 9.25E-07 6.033998701 0.121811364 RAT(ph)TPLYHGFK ddPTM_HeLa_A486_30min_R1 1 RATTPLYHGFK 11 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RAT(0.986)T(0.014)PLYHGFK 115.82 0.00029539 448650000 278720 319720 199740 108330 329930 272160 316930 317830 231600 318140 TRUE FALSE FALSE 259183.1673 294384.2228 277084.6772 252197.7147 288547.1029 238583.6663 237630.7619 245467.0472 251675.2745 238475.6733 1.086832731 1.234441311 1.16189913 1.057540634 1.209964517 1.000452847 0.996457033 1.029316927 1.055349886 1 17.86348258 -6.273106572 24.99331285 1.016906495 1.15032867 0.632482636 0.051003187 494.7201231 1059780.386 0.017809757 0.015833023 5.33E-07 6.273106572 0.133422174 RAVS(ph)EGCAS(ph)EDEVEGEA ddPTM_HeLa_A485_30min_R1 2 RAVSEGCASEDEVEGEA 17 1 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-6;Q9BYX2-5 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 2 0 RAVS(1)EGCAS(1)EDEVEGEA;RAVS(1)EGCAS(1)EDEVEGEA ; 93.371 0.00035646 451240000 474350 611250 635150 505340 741360 495490 548420 559890 526880 581310 TRUE FALSE FALSE 579867.521 682730.3703 870118.4158 532945.4446 667547.5953 521433.0902 431245.5868 422576.0996 632619.9832 436400.1152 1.328751989 1.564459647 1.993854689 1.221231219 1.529668696 1.194850945 0.988188526 0.968322612 1.449632943 1 18.73529196 -6.1515317 1.548265847 1.094326278 1.578911557 0.44145257 0.228663496 0.361588494 1.737406031 0.097448647 0.09625699 7.05E-07 6.1515317 0.484585279 RAVS(ph)EGCAS(ph)EDEVEGEA ddPTM_HeLa_A486_30min_R1 2 RAVSEGCASEDEVEGEA 17 1 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-6;Q9BYX2-5 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 2 0 RAVS(1)EGCAS(1)EDEVEGEA;RAVS(1)EGCAS(1)EDEVEGEA ; 127.32 7.79E-06 638920000 503440 810250 690440 222617 940570 645060 698050 756010 578740 589820 TRUE FALSE FALSE 468151.4558 746042.8391 957796.8586 518263.6264 822594.9401 565479.0557 523390.5068 583883.0266 628905.6492 442125.2329 1.058866178 1.687401631 2.166347422 1.172210016 1.860547372 1.279001997 1.183806007 1.320628146 1.422460431 1 18.75409555 -6.382954771 8.509272808 1.25492688 1.603082502 0.235962417 0.31225403 0.480319555 31.45707438 0.109042171 0.096042292 4.14E-07 6.382954771 0.348155622 RAVS(ph)PSNPK ddPTM_HeLa_A485_30min_R1 6 RAVSPSNPK 9 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 RAVS(0.962)PS(0.038)NPK;RAVS(0.999)PS(0.001)NPK;RAVS(0.979)PS(0.021)NPK;RAVS(1)PSNPK;RAVS(0.999)PS(0.001)NPK;RAVS(1)PSNPK ;;;;; 123.67 0.00058957 6439620000 2718060 3473710 2636060 3343210 3667840 3961280 4355300 5227490 2876580 4289380 TRUE FALSE FALSE 3322683.07 3879930.167 3611248.29 3525841.097 3302656.971 4168686.495 3424754.575 3945439.881 3453883.22 3220116.506 1.031851818 1.204903661 1.121465103 1.09494209 1.025632757 1.294576295 1.063549896 1.225247557 1.072595732 1 21.61868146 -8.002927579 24.72886111 0.999999985 1.1340444 0.204892951 0.082439464 116.2943003 982332.9344 0.074737367 0.019297105 9.93E-09 8.002927579 0.134044415 RAVS(ph)PSNPK ddPTM_HeLa_A486_30min_R1 6 RAVSPSNPK 9 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 RAVS(0.998)PS(0.002)NPK;RAVS(0.999)PS(0.001)NPK;RAVS(0.998)PS(0.002)NPK;RAVS(0.917)PS(0.083)NPK;RAVS(0.999)PS(0.001)NPK;RAVS(0.994)PS(0.006)NPK ;;;;; 148.19 0.00022227 8612460000 3790200 4398740 3200530 1901520 4916660 3972460 4999190 4608580 3732750 5160270 TRUE FALSE FALSE 3524526.553 4050167.822 4439860.929 4426834.658 4299966.657 3482378.274 3748339.786 3559306.939 4056307.775 3868104.804 0.911176592 1.047067757 1.147812987 1.144445376 1.111646885 0.900280228 0.969037804 0.920168175 1.048655086 1 21.88319545 -6.252230575 24.85983394 0.962726865 1.07920972 0.335026154 0.073352649 706.7949443 1908044.413 0.025649869 0.025313224 5.59E-07 6.252230575 0.116482855 RAVSEGCAS(ph)EDEVEGEA ddPTM_HeLa_A485_30min_R1 4 RAVSEGCASEDEVEGEA 17 1 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-6;Q9BYX2-5 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 RAVSEGCAS(1)EDEVEGEA;RAVSEGCAS(1)EDEVEGEA;RAVSEGCAS(1)EDEVEGEA;RAVSEGCAS(1)EDEVEGEA ;;; 214.5 8.40E-26 3203530000 1544470 2252760 2465540 1691060 2902520 1948210 2284020 2450180 2183920 2250060 TRUE FALSE FALSE 1888032.023 2516200.686 3377645.846 1783438.326 2613534.917 2050215.263 1796020.468 1849269.513 2622212.712 1689161.451 1.117733312 1.489615267 1.999599176 1.055812826 1.547238078 1.213747367 1.063261577 1.094785529 1.552375417 1 20.6878758 -6.343880816 6.127334349 1.180268054 1.4537405 0.176209194 0.27780853 0.427507592 25.65247067 0.098942961 0.08711581 4.53E-07 6.343880816 0.273472446 RAVSEGCAS(ph)EDEVEGEA ddPTM_HeLa_A486_30min_R1 4 RAVSEGCASEDEVEGEA 17 1 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-6;Q9BYX2-5 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 RAVSEGCAS(1)EDEVEGEA;RAVSEGCAS(1)EDEVEGEA;RAVSEGCAS(1)EDEVEGEA;RAVSEGCAS(1)EDEVEGEA ;;; 266.27 1.69E-51 3593410000 1683090 2224120 1926810 702360 2595210 1891080 2058700 2234010 1656580 1819340 TRUE FALSE FALSE 1565114.082 2047872.631 2672922.434 1635129.575 2269694.562 1657777.777 1543591.485 1725374.691 1800173.688 1363765.422 1.147641711 1.501631144 1.959957622 1.198981547 1.664285166 1.215588656 1.131859967 1.265155036 1.320002443 1 20.37916408 -6.328629833 8.861523666 1.19889809 1.504164491 0.313354957 0.227373932 0.535024129 67.03581905 0.07975066 0.070315095 4.69E-07 6.328629833 0.305266401 RAVVVS(ph)PK ddPTM_HeLa_A485_30min_R1 1 RAVVVSPK 8 1 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 RAVVVS(1)PK 45.915 0.037753 271610000 199300 238110 154750 282380 238140 233510 322180 343110 178270 366820 TRUE FALSE FALSE 243633.5974 265954.8932 211998.4647 297805.7044 214429.9454 245736.2225 253343.611 258961.7345 214047.1538 275378.5248 0.884722574 0.965779352 0.769843853 1.08144128 0.778673448 0.892357974 0.91998318 0.940384639 0.777283392 1 18.07105653 RAVVVS(ph)PKEENK ddPTM_HeLa_A486_30min_R1 1 RAVVVSPKEENK 12 2 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 RAVVVS(1)PKEENK 86.952 0.0011234 231780000 236080 271940 165350 533920 539780 591130 1039100 1027900 281110 685260 TRUE FALSE FALSE 219532.0111 250390.484 229377.9482 1242992.743 472075.7592 518202.3908 779106.1895 793869.6089 305476.8411 513666.4357 0.427382433 0.487457359 0.446550392 2.419844195 0.919031742 1.008830546 1.516755107 1.545496364 0.594698855 1 18.97047228 -5.108165971 21.50986904 1.302733499 0.456394701 0.399927657 0.467037411 8.820841287 1742.301823 0.123337156 0.213626863 7.80E-06 5.108165971 -0.846338798 RCAT(ph)PVIIDEILPSK ddPTM_HeLa_A485_30min_R1 2 RCATPVIIDEILPSK 15 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 RCAT(1)PVIIDEILPSK;RCAT(1)PVIIDEILPSK ; 144.88 7.24E-08 98105000 252400 270800 243280 290260 363520 279820 334550 344610 260770 358800 TRUE FALSE FALSE 308545.5092 302467.7044 333279.3957 306116.1688 327326.6724 294470.9425 263070.6595 260093.8572 313104.1471 269357.7632 1.145485861 1.1229218 1.237311269 1.13646685 1.215211578 1.093233546 0.97665891 0.965607429 1.162409961 1 18.03916412 -6.511973267 5.067645548 1.023854756 1.169731715 0.566194546 0.059990989 0.133260069 10.09213842 0.022130435 0.018164269 3.08E-07 6.511973267 0.145876959 RCAT(ph)PVIIDEILPSK ddPTM_HeLa_A486_30min_R1 2 RCATPVIIDEILPSK 15 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 RCAT(1)PVIIDEILPSK;RCAT(1)PVIIDEILPSK ; 127.5 2.03E-05 108327000 338260 372520 269830 136507 389950 338970 403120 383220 285840 351270 TRUE FALSE FALSE 314549.7208 343000.1585 374315.4023 317795.1947 341038.8349 297151.3278 302255.1122 295969.1716 310616.8413 263309.7056 1.194599797 1.302649128 1.421578447 1.206925487 1.295200396 1.128524021 1.14790722 1.124034418 1.179663471 1 18.00640117 -6.26364828 22.70837276 1.125770537 1.288556281 0.571167754 0.072561948 42.75418943 439525.7031 0.024662176 0.022838201 5.45E-07 6.26364828 0.162785743 RCAT(ph)PVIIDEILPSKK ddPTM_HeLa_A485_30min_R1 2 RCATPVIIDEILPSKK 16 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 RCAT(1)PVIIDEILPSKK;RCAT(1)PVIIDEILPSKK ; 168.75 4.27E-12 1004890000 710770 759570 543550 765740 980360 923770 1181780 1378450 662720 976090 TRUE FALSE FALSE 868878.3344 848395.1041 744631.764 807570.4372 882751.9161 972137.1688 929283.0487 1040382.976 795721.8252 732768.7266 1.185747021 1.157793821 1.016189334 1.102080927 1.204680118 1.326663016 1.268180553 1.419797186 1.085911279 1 19.48299841 -5.890728158 4.28614264 1.250835922 1.11184272 0.124657172 0.119072273 0.328112972 10.73102275 0.036607965 0.041990087 1.29E-06 5.890728158 -0.138993201 RCAT(ph)PVIIDEILPSKK ddPTM_HeLa_A486_30min_R1 1 RCATPVIIDEILPSKK 16 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 RCAT(1)PVIIDEILPSKK 149.85 5.22E-08 479300000 493270 513120 298590 221260 521070 496120 574620 580960 336840 543850 TRUE FALSE FALSE 458694.3202 472458.5024 414212.0445 515104.4619 455712.5418 434913.7586 430843.9983 448688.0903 366037.5624 407666.4201 1.125170722 1.158934067 1.016056325 1.263544007 1.117856461 1.066837338 1.056854274 1.10062558 0.897884997 1 18.6370296 -7.226600408 0.997942411 0.966699753 1.133498288 0.437017133 0.070458434 0.530093144 0.941461823 0.0607622 0.025004769 5.93E-08 7.226600408 0.166798535 RCPS(ph)QSSSRPAAMISQPPTPPTGQPVR ddPTM_HeLa_A485_30min_R1 1 RCPSQSSSRPAAMISQPPTPPTGQPVR 27 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 RCPS(0.25)QS(0.25)S(0.25)S(0.25)RPAAMIS(0.001)QPPTPPTGQPVR 101.86 0.00048905 223700000 76420 89195 80469 86331 92127 78686 89671 60062 86920 108080 TRUE FALSE FALSE 93419.36535 99625.57936 110237.8317 91047.04393 82954.5124 82805.87729 70512.05831 45331.70033 104364.0467 81137.64506 1.151368952 1.227858897 1.358652098 1.122130718 1.022392409 1.020560521 0.869042456 0.558701208 1.286259253 1 16.30808381 -5.875588336 1.525094171 0.907958154 1.243685454 0.346070564 0.17625757 0.397051794 1.912996179 0.066981445 0.082809561 1.33E-06 5.875588336 0.3357273 RCPS(ph)QSSSRPAAMISQPPTPPTGQPVR ddPTM_HeLa_A486_30min_R1 2 RCPSQSSSRPAAMISQPPTPPTGQPVR 27 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 RCPS(0.248)QS(0.248)S(0.248)S(0.248)RPAAMIS(0.009)QPPTPPTGQPVR;RCPS(0.249)QS(0.249)S(0.249)S(0.249)RPAAMIS(0.006)QPPTPPTGQPVR ; 115.05 0.00010912 407590000 574950 630330 427750 149817 626660 643230 767370 719800 554790 736960 TRUE FALSE FALSE 534648.974 580380.3552 593386.2555 348781.5473 548058.4594 563874.8225 575365.9096 555917.2531 602879.6439 552420.4192 0.967829855 1.050613509 1.074156992 0.63136976 0.992103913 1.020734938 1.041536282 1.006330023 1.09134207 1 19.07540712 -5.992149856 24.99976496 1.030029768 0.932509706 0.147105347 0.114624037 408.6145791 1301272.418 0.037408007 0.042348073 1.02E-06 5.992149856 -0.097520062 RCPS(ph)QSSSRPAAMISQPPTPPTGQPVREDAK ddPTM_HeLa_A486_30min_R1 2 RCPSQSSSRPAAMISQPPTPPTGQPVREDAK 31 3 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 RCPS(0.615)QS(0.111)S(0.111)S(0.163)RPAAMISQPPTPPTGQPVREDAK;RCPS(0.528)QS(0.033)S(0.183)S(0.257)RPAAMISQPPTPPTGQPVREDAK ; 216.53 5.77E-38 1090260000 286090 201515 171132 120763 252267 240734 305730 344060 176892 333550 TRUE FALSE FALSE 266036.5684 185546.2175 237398.8935 281142.367 220625.3206 211034.6867 229233.1203 265725.0488 192225.141 250026.909 1.064031746 0.742104993 0.949493374 1.124448437 0.882406304 0.844047897 0.916833797 1.062785801 0.768817812 1 17.93172385 RCPSQS(ph)SSRPAAMISQPPTPPTGQPVREDAK ddPTM_HeLa_A485_30min_R1 1 RCPSQSSSRPAAMISQPPTPPTGQPVREDAK 31 3 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 RCPS(0.335)QS(0.423)S(0.103)S(0.103)RPAAMIS(0.037)QPPTPPTGQPVREDAK 94.992 0.00023664 289510000 291790 315580 220660 433660 340850 333220 563330 584680 247040 604120 TRUE FALSE FALSE 356697.6788 352484.3358 302291.3164 457349.7477 306913.7772 350666.8839 442969.9435 441286.3133 296618.662 453524.002 0.786502318 0.777212086 0.666538739 1.008435597 0.676731057 0.773204687 0.976728776 0.973016447 0.654030792 1 18.79081938 -6.737540444 24.8958829 0.898695383 0.781581366 0.178605627 0.125515315 396.0717486 412593.6599 0.046847632 0.036267974 1.83E-07 6.737540444 -0.117114017 RCPT(ph)PEIQK ddPTM_HeLa_A485_30min_R1 5 RCPTPEIQK 9 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK ;;;; 135.94 0.00015743 4650080000 4551580 4242250 3775390 6269760 5510840 4517970 5930230 5323880 4618350 8078340 TRUE FALSE FALSE 5564063.268 4738344.235 5172063.868 6612261.113 4962161.42 4754523.923 4663187.915 4018190.082 5545210.483 6064558.509 0.917472106 0.78131726 0.852834359 1.090312032 0.818223027 0.783985168 0.768924549 0.662569266 0.914363424 1 22.53197119 -5.971759838 24.99997153 0.801290356 0.904280867 0.103776357 0.111986603 401.7037619 355611.6601 0.034635928 0.039272824 1.07E-06 5.971759838 0.102990511 RCPT(ph)PEIQK ddPTM_HeLa_A486_30min_R1 6 RCPTPEIQK 9 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK;RCPT(1)PEIQK ;;;;; 160.56 1.18E-05 5834560000 6657330 7840800 5030190 2723870 7344710 8367500 8956250 8346040 6784760 8815550 TRUE FALSE FALSE 6190685.545 7219466.452 6978014.281 6341307.017 6423467.985 7335202.925 6715301.52 6445828.885 7372868.46 6608078.9 0.9368359 1.092521225 1.055982289 0.959629434 0.972062846 1.110035615 1.01622599 0.975446719 1.115735537 1 22.65579948 RCPT(ph)PEIQKK ddPTM_HeLa_A485_30min_R1 3 RCPTPEIQKK 10 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RCPT(1)PEIQKK;RCPT(1)PEIQKK;RCPT(1)PEIQKK ;; 125.53 0.00011025 7034660000 4774600 4684030 3341500 5639500 5838500 6048000 8574300 9979900 4755110 7909700 TRUE FALSE FALSE 5836693.298 5231786.563 4577659.901 5947571.605 5257198.44 6364663.928 6742330.759 7532313.877 5709416.961 5937957.357 0.982946314 0.881075132 0.770914917 1.001619117 0.885354697 1.071860834 1.135462981 1.268502521 0.961511951 1 22.5015353 -6.339835628 3.741845846 1.112845637 0.900201675 0.461719475 0.097604604 0.19734975 5.30765749 0.035334079 0.031212738 4.57E-07 6.339835628 -0.212643962 RCPT(ph)PEIQKK ddPTM_HeLa_A486_30min_R1 3 RCPTPEIQKK 10 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RCPT(1)PEIQKK;RCPT(1)PEIQKK;RCPT(1)PEIQKK ;; 131.06 7.41E-05 7126230000 10492260 9667180 4918810 4810370 9879810 10332870 13752800 13383600 7372830 14807400 TRUE FALSE FALSE 9756806.756 8901117.45 6823504.962 11198784.46 8640592.104 9058105.556 10311703.98 10336446.44 8011912.841 11099530.66 0.879028768 0.801936381 0.61475617 1.008942162 0.778464637 0.816080052 0.929021622 0.931250767 0.72182447 1 23.40399534 -14 0.145598983 1.565862828 0.779629486 0.166709751 0.108687516 242.8969069 2.127278429 40.078275 0.59440189 1.00E-14 14 -0.786233342 RCQTAEADS(ph)ES(ph)DHEVPEPESEMK ddPTM_HeLa_A485_30min_R1 2 RCQTAEADSESDHEVPEPESEMK 23 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 0 RCQTAEADS(1)ES(1)DHEVPEPESEMK;RCQTAEADS(1)ES(1)DHEVPEPESEMK ; 184.66 3.47E-21 1483600000 918870 875380 654510 1230570 1207640 1111110 1546670 1631740 825030 1743520 TRUE FALSE FALSE 1123269.461 977748.0762 896640.4854 1297792.923 1087403.121 1169286.001 1216211.319 1231553.207 990605.9534 1308892.551 0.858183096 0.74700408 0.685037503 0.991519833 0.830781045 0.893339946 0.929191108 0.940912381 0.756827558 1 20.31991524 -5.257962967 24.9976232 0.90091417 0.761767814 0.408693145 0.078463517 302.8911937 2177971.14 0.020864403 0.03434318 5.52E-06 5.257962967 -0.139146356 RCQTAEADS(ph)ES(ph)DHEVPEPESEMK ddPTM_HeLa_A486_30min_R1 1 RCQTAEADSESDHEVPEPESEMK 23 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 0 RCQT(0.002)AEADS(0.998)ES(1)DHEVPEPESEMK 128.89 6.64E-12 0 498270 436180 216870 218990 451680 489700 650030 599230 320680 624030 TRUE FALSE FALSE 463343.8461 401615.5083 300847.872 509819.7871 395026.0827 429285.7929 487385.6187 462798.4101 348476.8006 467768.8262 0.990540241 0.858576899 0.643155027 1.089896886 0.844489971 0.917730658 1.041936938 0.989374204 0.744976538 1 18.83543619 -5.276486873 24.9935722 0.944947793 0.833539309 0.160660373 0.121558632 1511.889458 2511213.613 0.034124176 0.050835657 5.29E-06 5.276486873 -0.111408484 RCS(ph)DPSLNEK ddPTM_HeLa_A485_30min_R1 4 RCSDPSLNEK 10 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 RCS(0.997)DPS(0.003)LNEK;RCS(0.979)DPS(0.021)LNEK;RCS(0.997)DPS(0.003)LNEK;RCS(0.896)DPS(0.104)LNEK ;;; 141.87 3.81E-06 1135140000 913700 951840 797450 1136880 1213120 1008490 1372490 1315300 995080 1547560 TRUE FALSE FALSE 1116949.413 1063149.408 1092459.94 1198984.876 1092337.513 1061292.977 1079246.299 992720.6127 1194783.429 1161781.773 0.961410687 0.915102503 0.940331451 1.032022454 0.940226073 0.913504586 0.928957851 0.854481139 1.028406071 1 20.14790767 -5.978967095 24.99656709 0.934067664 0.96089272 0.006510802 0.052544258 808.6869624 961079.8392 0.016076477 0.018227485 1.05E-06 5.978967095 0.026825056 RCS(ph)DPSLNEK ddPTM_HeLa_A486_30min_R1 4 RCSDPSLNEK 10 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 RCS(0.999)DPS(0.001)LNEK;RCS(1)DPSLNEK;RCS(1)DPSLNEK;RCS(0.96)DPS(0.04)LNEK ;;; 128.73 5.35E-05 1574510000 1695360 1836140 1153070 764370 1983760 1956170 2257630 2228860 1477690 2259970 TRUE FALSE FALSE 1576524.019 1690637.579 1599569.584 1779491.989 1734938.323 1714837.634 1692747.095 1721397.234 1605777.359 1694058.802 0.930619419 0.997980458 0.944223177 1.050431064 1.024131111 1.012265709 0.999225702 1.016137829 0.947887616 1 20.69205252 -3.749183178 1.013617708 1.005085133 0.806845535 0.31705342 0.03046196 5.659364496 2.289775739 0.009682782 1.55930754 0.000178163 3.749183178 -0.198239598 RCS(ph)EDFSPLSPDVPMTVNTVDHSHSTTVEKPNNETGDITR ddPTM_HeLa_A486_30min_R1 1 RCSEDFSPLSPDVPMTVNTVDHSHSTTVEKPNNETGDITR 40 2 Q7Z3T8 Q7Z3T8 ZFYVE16 Zinc finger FYVE domain-containing protein 16 1 0 RCS(0.998)EDFS(0.002)PLSPDVPMTVNTVDHSHSTTVEKPNNETGDITR 116 2.09E-06 247060000 41387 35337 25655 2889.2 42211 28980 34462 30988 27713 24124 TRUE FALSE FALSE 38485.98502 32536.76742 35589.30306 6726.203612 36916.50278 25404.74225 25839.2431 23932.70886 30115.18515 18083.19338 2.128273708 1.79928217 1.968087291 0.371958839 2.041481391 1.404881412 1.428909295 1.323478014 1.66536875 1 14.14236185 RCSQLEGHSGT(ph)RVGS(ph)SLRQTFS(ph)FLSGMTGK ddPTM_HeLa_A486_30min_R1 1 RCSQLEGHSGTRVGSSLRQTFSFLSGMTGK 30 3 V9GYM8;A0A5F9ZI21;V9GY94 V9GYM8 ARHGEF2 3 0 RCS(0.251)QLEGHS(0.353)GT(0.397)RVGS(0.437)S(0.437)LRQT(0.122)FS(0.742)FLS(0.141)GMT(0.121)GK 44.641 0.025536 828110000 19376 18426 18241 8650.7 27435 17388 18983 26978 17025 23703 TRUE FALSE FALSE 18017.84246 16965.85665 25304.40371 20139.26678 23993.84648 15242.84535 14233.25262 20835.69833 18500.74071 17767.61452 1.014083373 0.954875323 1.424186893 1.133481749 1.35042588 0.857900498 0.801078423 1.172678431 1.041261937 1 14.11696238 -6.272031958 24.97944279 0.974532175 1.174650205 0.281776239 0.160310883 1047.591071 2470425.216 0.059237145 0.052787843 5.35E-07 6.272031958 0.20011803 RDAGGPRPES(ph)PVPAGR ddPTM_HeLa_A485_30min_R1 1 RDAGGPRPESPVPAGR 16 2 E9PS47;E9PLE4;Q9BVG9 E9PS47 PTDSS2 Phosphatidylserine synthase 2 1 0 RDAGGPRPES(1)PVPAGR 120.92 1.35E-05 0 79654 84672 72479 52190 87247 81896 85780 111670 73673 113520 TRUE FALSE FALSE 97372.7575 94573.65385 99291.9982 55041.00755 78560.38234 86183.94792 67452.40224 84282.75741 88458.49533 85221.55318 1.142583699 1.109738679 1.165104302 0.645857832 0.921837017 1.011292856 0.791494636 0.988984057 1.03798267 1 16.37893072 RDDDYRGGGDR ddPTM_HeLa_A485_30min_R1 2 RDDDYRGGGDR 11 2 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 113.24 0.00035928 575480000 56905 76895 43883 150502 47981 95469 96685 115585 53100 125715 FALSE FALSE TRUE 69563.32093 85887.20135 60117.14782 158723.5432 43203.84317 100467.6092 76027.45991 87237.59752 63756.68294 94376.56411 0.737082575 0.910047978 0.636992334 1.681810995 0.45778148 1.064539806 0.805575628 0.924356575 0.675556305 1 16.52614103 RDDDYRGGGDR ddPTM_HeLa_A486_30min_R1 1 RDDDYRGGGDR 11 2 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 83.182 0.0041866 72348000 7810.5 6522.1 10644 13589 8191.2 15238 9347.4 11626 9355.3 21415 FALSE FALSE TRUE 7263.024283 6005.265043 14765.64186 31635.87875 7163.783316 13358.09049 7008.581653 8979.013594 10166.22494 16052.54461 0.452453144 0.374100505 0.919831853 1.970770337 0.446270887 0.83214785 0.436602534 0.559351418 0.633309247 1 13.97051439 RDDDYRGGGDRYEDR ddPTM_HeLa_A485_30min_R1 1 RDDDYRGGGDRYEDR 15 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 138.39 3.69E-06 834480000 22295 32197 28714 11227 29441 32400 27983 47052 22741 19493 FALSE FALSE TRUE 27254.44583 35962.15907 39336.50349 11840.30258 26509.75067 34096.4139 22004.20345 35512.42323 27304.91011 14633.75384 1.862437084 2.457480115 2.688066501 0.809109044 1.811548216 2.329984109 1.503660898 2.426747341 1.865885569 1 13.83701228 -10.75690222 1.940026204 0.669493211 1.97915796 0.23941393 0.520040116 822937.5608 420448.3076 1292856.97 0.14176487 1.75E-11 10.75690222 1.309664749 RDDDYRGGGDRYEDR ddPTM_HeLa_A486_30min_R1 1 RDDDYRGGGDRYEDR 15 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 95.347 0.00062572 80391000 5265.2 4069.8 4385.2 1335.2 7109.6 4131.6 5543.3 3656.3 2456.3 4100.9 FALSE FALSE TRUE 4896.13667 3747.294226 6083.26688 3108.413077 6217.847674 3621.885199 4156.307709 2823.840306 2669.214062 3074.007948 1.592753419 1.219025549 1.978936614 1.011192271 2.02271685 1.178228964 1.35208099 0.918618414 0.868317229 1 11.58590518 -7.00566417 1.565489441 0.903837113 1.528513005 0.418223623 0.304741778 0.377151834 1.791063529 0.190606577 0.091818039 9.87E-08 7.00566417 0.624675892 RDEDMLYS(ph)PELAQR ddPTM_HeLa_A485_30min_R1 2 RDEDMLYSPELAQR 14 1 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 RDEDMLYS(1)PELAQR;RDEDMLYS(1)PELAQR ; 198.77 5.55E-22 180728000 161731 153298 149938 186631 191750 138969 182055 158391 159806 225660 TRUE FALSE FALSE 197707.503 171224.8676 205406.3056 196826.179 172658.6967 146245.202 143157.462 119545.3589 191877.5984 169407.115 1.167055487 1.010730084 1.212501055 1.161853084 1.019193891 0.863276622 0.845049879 0.705669056 1.132641911 1 17.37013494 -6.026090229 3.324633773 0.887915753 1.133181445 0.461763314 0.11489936 0.207244068 4.724513544 0.038168476 0.040639996 9.42E-07 6.026090229 0.245265692 RDEDMLYS(ph)PELAQR ddPTM_HeLa_A486_30min_R1 3 RDEDMLYSPELAQR 14 1 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 RDEDMLY(0.001)S(0.999)PELAQR;RDEDMLYS(1)PELAQR;RDEDMLYS(1)PELAQR ;; 243.16 1.23E-35 435570000 324370 359559 260740 133767 369680 364760 379510 361549 288251 383160 TRUE FALSE FALSE 301633.338 331066.2353 361705.5109 311416.3362 323311.2873 319759.6198 284552.584 279232.1853 313236.8288 287214.242 1.050203276 1.152680428 1.259357852 1.084264951 1.125679858 1.113313941 0.990732848 0.972208701 1.0906034 1 18.13176776 -6.668468298 4.607097969 1.011226546 1.137715403 0.493108301 0.058494511 0.183594711 6.808755433 0.023890675 0.018030637 2.15E-07 6.668468298 0.126488857 RDELLAQHAAGALGLPDLVAVLTR ddPTM_HeLa_A485_30min_R1 1 RDELLAQHAAGALGLPDLVAVLTR 24 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 95.71 0.0024834 9895400 6028.8 8215.7 9142.2 8465.8 8251.5 9903.3 10559 8344.1 4183.4 11989 FALSE FALSE TRUE 7369.885761 9176.454648 12524.28022 8928.265217 7429.951687 10421.82147 8302.983391 6297.696392 5022.970008 9000.362941 0.818843174 1.019564956 1.391530575 0.991989465 0.825516897 1.157933468 0.922516508 0.699715826 0.558085273 1 13.13576746 -7.096190729 3.857226615 0.724314169 1.038913886 0.312708183 0.184573254 0.270188455 7.234283185 0.094406313 0.052690212 8.01E-08 7.096190729 0.314599717 RDELLAQHAAGALGLPDLVAVLTR ddPTM_HeLa_A486_30min_R1 1 RDELLAQHAAGALGLPDLVAVLTR 24 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 80.061 0.0075608 9114700 8923.5 13725 11450 6661.6 36512 13233 15733 13106 13274 14610 FALSE FALSE TRUE 8298.008731 12637.38101 15883.74664 15508.54146 31932.3245 11600.447 11796.43699 10122.0499 14424.60101 10951.5609 0.757701007 1.153934231 1.450363723 1.416103293 2.915778379 1.059250558 1.077146637 0.924256368 1.317127406 1 13.41884889 RDFS(ph)PVPWSQYFESMEDVEVENETGKDTFR ddPTM_HeLa_A485_30min_R1 1 RDFSPVPWSQYFESMEDVEVENETGKDTFR 30 2 Q9Y570-4;Q9Y570 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 RDFS(0.975)PVPWS(0.023)QY(0.002)FESMEDVEVENETGKDTFR 47.191 0.018734 87284000 6111.4 8434.5 9172.1 2526.6 12901 6135.4 7315.6 7754.7 7925.1 4550.7 TRUE FALSE FALSE 7470.859846 9420.841405 12565.24147 2664.62176 11616.53114 6456.640057 5752.562297 5852.847666 9515.594877 3416.294239 2.186831497 2.757620025 3.678032568 0.779974315 3.400330981 1.88995432 1.683860316 1.713215331 2.785355771 1 11.73821652 -9.30777261 0.142159107 6.05E-10 3.115054299 0.200652961 0.816173041 33.54491951 1.370284504 22.72011647 7.289406758 4.92E-10 9.30777261 3.115054298 RDGWS(ph)LDR ddPTM_HeLa_A485_30min_R1 2 RDGWSLDR 8 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 RDGWS(1)LDR;RDGWS(1)LDR ; 92.943 0.0020267 409710000 240840 273570 264070 285920 341130 290240 333950 298600 301900 382290 TRUE FALSE FALSE 294414.0271 305561.6318 361760.4819 301539.0856 307165.8994 305436.5176 262598.8544 225367.8818 362488.5608 286992.1385 1.025860947 1.064703839 1.260524012 1.050687615 1.070293775 1.06426789 0.91500365 0.785275454 1.263060942 1 18.13065169 -6.596115949 5.59200352 0.973386154 1.096694323 0.125010044 0.126170407 0.372336219 20.68199043 0.048310012 0.037223774 2.53E-07 6.596115949 0.123308169 RDGWS(ph)LDR ddPTM_HeLa_A486_30min_R1 2 RDGWSLDR 8 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 RDGWS(1)LDR;RDGWS(1)LDR ; 94.767 0.0018426 283170000 299930 289020 212463 81905 275360 292010 308870 311870 264900 355710 TRUE FALSE FALSE 278906.4558 266117.0026 294734.3636 190678.9792 240821.7812 255984.7751 231587.4591 240864.0091 287861.7453 266637.9007 1.046012045 0.998046421 1.105373102 0.715123314 0.903179107 0.960046469 0.868546664 0.903337479 1.079598004 1 18.02452234 RDGWS(ph)LDRDR ddPTM_HeLa_A486_30min_R1 2 RDGWSLDRDR 10 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 RDGWS(1)LDRDR;RDGWS(1)LDRDR ; 75.911 0.0072515 619670000 267460 265280 280700 110305 351050 357720 379640 375530 258870 337890 TRUE FALSE FALSE 248712.4352 244258.2467 389394.5574 256795.6145 307018.0356 313588.1434 284650.0566 290030.0168 281309.06 253280.1447 0.981965781 0.964379766 1.537406566 1.013879769 1.212167799 1.238107882 1.123854603 1.145095748 1.11066369 1 17.95037446 -13.87064259 12.18510662 1.013634668 1.14492936 0 0.163154439 0 0 0 0.036360166 1.35E-14 13.87064259 0.131294692 RDHRPPCAQEAPR ddPTM_HeLa_A485_30min_R1 4 RDHRPPCAQEAPR 13 2 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 0 ;;; ;;; 128.35 2.03E-05 417144000 23591.7 34316.4 34299.8 25889.1 43930.3 33621.2 37643.6 47558.8 29822 37566.3 FALSE FALSE TRUE 28839.59227 38329.40447 46988.72335 27303.35598 39556.44508 35381.55404 29600.73734 35894.92973 35807.00186 28201.71277 1.022618467 1.359116192 1.666165589 0.968145311 1.402625628 1.254588838 1.049607787 1.272792544 1.269674723 1 14.78349516 -6.536488913 24.02150316 1.168086691 1.29533277 0.090310603 0.199523336 410.3672697 724274.5557 0.075631245 0.05862256 2.91E-07 6.536488913 0.127246079 RDHRPPCAQEAPR ddPTM_HeLa_A486_30min_R1 3 RDHRPPCAQEAPR 13 2 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 0 ;; ;; 130.2 1.74E-05 201189000 20718.2 24258.8 27896.4 9462.2 30099 22643.1 27007.1 29188.7 23219.9 27211 FALSE FALSE TRUE 19265.96117 22336.44434 38698.63317 22028.47979 26323.70276 19849.62454 20249.63793 22543.07019 25232.61963 20397.18849 0.944540037 1.095074665 1.8972533 1.079976282 1.29055545 0.97315493 0.992766133 1.105204779 1.23706361 1 14.31608269 -6.247581319 23.88834493 1.063908706 1.277472439 0.137809989 0.24829156 921.5226286 1588508.472 0.084898971 0.084409833 5.65E-07 6.247581319 0.213563734 RDKS(ph)PGRPLER ddPTM_HeLa_A485_30min_R1 1 RDKSPGRPLER 11 3 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 RDKS(1)PGRPLER 100.4 0.0077501 104020000 93045 97833 79114 132670 142710 114680 146260 173250 99894 155110 TRUE FALSE FALSE 113742.5392 109273.7183 108381.5608 139917.4262 128501.2913 120684.4675 115010.3562 130760.1659 119941.8095 116443.9316 0.976800918 0.93842347 0.930761778 1.201586242 1.103546484 1.036416976 0.987688706 1.122945301 1.03003916 1 16.82927593 -5.204803429 24.99998984 1.070719695 0.947638062 0.451265316 0.06072758 262.7211822 115968.5328 0.01682541 0.02914249 6.24E-06 5.204803429 -0.123081633 RDKS(ph)PGRPLER ddPTM_HeLa_A486_30min_R1 1 RDKSPGRPLER 11 3 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 RDKS(1)PGRPLER 96.371 0.011019 139360000 135730 136060 89319 65752 163700 151090 186470 190780 101990 172840 TRUE FALSE FALSE 126216.0279 125278.1101 123905.7088 153073.9789 143167.2196 132450.052 139813.2337 147343.5587 110830.5753 129559.739 0.974191743 0.966952473 0.956359667 1.181493418 1.10502862 1.022308728 1.079141057 1.137263473 0.85543994 1 16.98325794 RDLFAFQES(ph)PPR ddPTM_HeLa_A485_30min_R1 1 RDLFAFQESPPR 12 1 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 RDLFAFQES(1)PPR 127.94 2.08E-05 85583000 58243 75778 67582 77980 88602 82627 84670 90415 68738 104340 TRUE FALSE FALSE 71198.95441 84639.57792 92583.39412 82239.84994 79780.47378 86953.22195 66579.56281 68240.57948 82533.0861 78329.95824 0.908961986 1.080551807 1.181966596 1.049915662 1.018518018 1.110088961 0.849988489 0.87119387 1.053659263 1 16.25727657 -6.751639229 24.9996578 0.932976554 1.062770966 0.299769206 0.085031846 233.0492041 594497.1304 0.033269333 0.025445161 1.77E-07 6.751639229 0.129794413 RDLFAFQES(ph)PPR ddPTM_HeLa_A486_30min_R1 1 RDLFAFQESPPR 12 1 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 RDLFAFQES(1)PPR 79.346 0.0038822 95035000 67409 72192 59227 48354 72417 75478 82396 84576 63278 109830 TRUE FALSE FALSE 62683.9772 66471.243 82161.28055 112570.5557 63333.7846 66166.29176 61779.6493 65319.89108 68762.98799 82327.85313 0.761394532 0.807396774 0.997976717 1.367344725 0.769287455 0.803692666 0.750410061 0.793411811 0.835233586 1 16.32909298 RDLNES(ph)PVK ddPTM_HeLa_A485_30min_R1 1 RDLNESPVK 9 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 RDLNES(1)PVK 105.13 0.00068941 481530000 675030 772040 617690 939630 882350 766410 1031100 1006800 713410 1252300 TRUE FALSE FALSE 825188.0947 862323.3621 846199.2352 990959.6076 794500.1359 806538.0425 810797.0617 759880.7214 856584.8432 940124.6569 0.877743274 0.91724364 0.900092588 1.054072564 0.845100839 0.857905424 0.862435695 0.808276558 0.911139642 1 19.84249254 RDLNES(ph)PVK ddPTM_HeLa_A486_30min_R1 2 RDLNESPVK 9 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 RDLNES(1)PVK;RDLNES(1)PVK ; 138.15 9.28E-05 1082990000 1615930 1795430 1279000 789500 1759280 1729090 2411200 2163300 1474990 2558900 TRUE FALSE FALSE 1502661.652 1653153.588 1774263.053 1837995.899 1538614.698 1515772.456 1807892.257 1670763.815 1602843.321 1918134.784 0.783397321 0.861854757 0.924993941 0.95822041 0.802141075 0.790232505 0.942526183 0.871035669 0.835626012 1 20.87127267 -10.70311278 2.685350121 1.021285254 0.866502592 0.320327368 0.059560486 25903925.8 22165611.99 3732499.192 0.015360696 1.98E-11 10.70311278 -0.154782661 RDLRDDRDR ddPTM_HeLa_A485_30min_R1 9 RDLRDDRDR 9 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;;;;;;; ;;;;;;;; 137.95 0.00010646 757684700 344581.7 1070918.1 643091.4 186319.3 821510.9 1036055.5 1160248.1 2426237 524586 300922.9 FALSE FALSE TRUE 421232.7104 1196152.656 880997.6701 196497.4516 739718.3903 1090301.764 912351.6151 1831198.572 629865.5984 225908.3591 1.864617635 5.294857883 3.899801112 0.86981045 3.274417969 4.826301108 4.03859166 8.105935428 2.78814649 1 17.78537813 -6.217163037 6.500973385 4.588733459 3.085474088 0.049637786 2.020406975 0.516377713 58.56128493 0.662097681 0.655898168 6.07E-07 6.217163037 -1.50325937 RDLRDDRDR ddPTM_HeLa_A486_30min_R1 4 RDLRDDRDR 9 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;; ;;; 113.62 0.00051024 187249000 339904 185145 251780 136417 372242 195229 301553 340212 143222 345154 FALSE FALSE TRUE 316078.4849 170473.4359 349275.9589 317585.6701 325551.9373 171143.6309 226101.2499 262753.1544 155636.5983 258725.1918 1.221676492 0.658897708 1.349988211 1.227501922 1.25829238 0.661488082 0.873905043 1.015568498 0.601551775 1 17.98106101 -6.255923703 24.98054085 0.834188358 1.132525443 0.351346863 0.212206018 570.031243 2581677.879 0.071645239 0.06969789 5.55E-07 6.255923703 0.298337085 RDPEDS(ph)DVFEEDTHL ddPTM_HeLa_A485_30min_R1 2 RDPEDSDVFEEDTHL 15 1 Q9NZ53-2;Q9NZ53 Q9NZ53-2 PODXL2 Podocalyxin-like protein 2 1 0 RDPEDS(1)DVFEEDTHL;RDPEDS(1)DVFEEDTHL ; 235.73 2.87E-41 654860000 349190 338750 262890 370800 321780 355490 439620 408420 307720 648320 TRUE FALSE FALSE 426866.1108 378363.8658 360143.9508 391055.8651 289742.4534 374102.9067 345691.5956 308254.3546 369476.5814 486705.7554 0.877051701 0.777397558 0.739962383 0.803474914 0.59531339 0.768642866 0.710268148 0.633348489 0.759137482 1 18.89269031 -8.043225179 22.90559686 1.000000002 0.734497617 0.51080943 0.076358473 2845.359976 1507792.058 0.074777363 0.019307432 9.05E-09 8.043225179 -0.265502385 RDPEDS(ph)DVFEEDTHL ddPTM_HeLa_A486_30min_R1 2 RDPEDSDVFEEDTHL 15 1 Q9NZ53-2;Q9NZ53 Q9NZ53-2 PODXL2 Podocalyxin-like protein 2 1 0 RDPEDS(1)DVFEEDTHL;RDPEDS(1)DVFEEDTHL ; 224.99 5.73E-34 656880000 279848 291073 297025 96990 368160 320630 300663 285395 320671 328370 TRUE FALSE FALSE 260232.1003 268007.3154 412041.0346 225797.6216 321981.9398 281073.9305 225433.9373 220416.7886 348467.0205 246144.0147 1.057235134 1.088823207 1.673983563 0.917339477 1.308103877 1.141908451 0.91586195 0.89547897 1.415703814 1 17.90914313 -6.528251902 24.39314842 1.045313082 1.213330727 0.088148382 0.229589239 261.5902493 1187547.997 0.08602012 0.066864769 2.96E-07 6.528251902 0.168017644 RDPFRDS(ph)PLSSR ddPTM_HeLa_A485_30min_R1 1 RDPFRDSPLSSR 12 2 Q9UJY1 Q9UJY1 HSPB8 Heat shock protein beta-8 1 0 RDPFRDS(0.879)PLS(0.115)S(0.006)R 109.07 0.0003244 707810000 374180 412860 436870 354850 619170 459960 541330 639280 367810 501760 TRUE FALSE FALSE 457415.0501 461140.3856 598486.3927 374234.557 557523.2608 484042.7944 425670.4232 482495.5776 441626.0932 376680.4662 1.214331751 1.22422166 1.588843719 0.993506674 1.480096025 1.285022288 1.130057068 1.280914783 1.172415702 1 18.52298169 -8.400653137 0.516331473 0.987772792 1.300905671 0.233496487 0.156337118 2.403595362 1.260767522 0.217739021 0.077801034 3.98E-09 8.400653137 0.313132879 RDPFRDS(ph)PLSSR ddPTM_HeLa_A486_30min_R1 2 RDPFRDSPLSSR 12 2 Q9UJY1 Q9UJY1 HSPB8 Heat shock protein beta-8 1 0 RDPFRDS(0.735)PLS(0.24)S(0.026)R;RDPFRDS(0.819)PLS(0.18)S(0.001)R ; 124.78 3.09E-05 1094060000 798050 1036080 963890 383810 1286410 1002710 1198360 1185080 900890 1147400 TRUE FALSE FALSE 742110.8161 953977.2475 1337134.022 893529.0767 1125056.463 879005.835 898517.653 915263.1541 978979.8706 860083.5717 0.862835706 1.109168084 1.554655926 1.038886343 1.308078075 1.022000494 1.04468645 1.064156071 1.138238077 1 19.71411732 -6.29128626 24.79649267 1.057255354 1.184643526 0.109103007 0.17144449 1504.354526 1249797.971 0.061464154 0.054214778 5.11E-07 6.29128626 0.127388172 RDPFRDSPLS(ph)SR ddPTM_HeLa_A485_30min_R1 1 RDPFRDSPLSSR 12 2 Q9UJY1 Q9UJY1 HSPB8 Heat shock protein beta-8 1 0 RDPFRDS(0.123)PLS(0.865)S(0.011)R 113.4 0.001024 0 362110 386180 422640 359750 630940 464610 520090 614030 376570 446240 TRUE FALSE FALSE 442660.1202 431340.3917 578992.1235 379402.2316 568121.3982 488936.2612 408968.5228 463438.1797 452144.1449 335000.5804 1.321371204 1.287581028 1.728331702 1.132542013 1.695881832 1.459508699 1.220799445 1.383395155 1.349681676 1 18.35380407 -8.918395878 0.555316065 0.971593966 1.427280083 0.320053444 0.178089696 4.391326152 1.738863616 0.459440565 0.07838708 1.21E-09 8.918395878 0.455686118 RDPHLACVAYER ddPTM_HeLa_A485_30min_R1 2 RDPHLACVAYER 12 1 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 ; ; 68.809 0.017647 246908000 65255 87718 94820 67724 113110 84882 111485 117878 79931 105734 FALSE FALSE TRUE 79770.74962 97975.85705 129897.8638 71423.59063 101848.3712 89326.29027 87665.319 88968.23567 95972.41853 79376.45969 1.004967341 1.234318807 1.636478426 0.899808217 1.283105491 1.125349891 1.104424654 1.12083905 1.209079101 1 16.2764236 -5.298121832 24.99998804 1.119230822 1.286162102 0.190797041 0.173789835 1018.789418 694327.6674 0.048495044 0.071932195 5.03E-06 5.298121832 0.166931279 RDPHLACVAYER ddPTM_HeLa_A486_30min_R1 2 RDPHLACVAYER 12 1 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 ; ; 94.728 0.0022531 372920000 189071 230540 207590 75246 273070 180719 207684 217730 172267 205472 FALSE FALSE TRUE 175818.0993 212271.1708 287974.4075 175176.4907 238819.0143 158423.7272 155719.2665 168157.632 187199.2423 154020.4738 1.141524207 1.378200999 1.869715112 1.137358472 1.550566677 1.028588754 1.011029655 1.091787526 1.215417909 1 17.23276261 -6.270088943 24.60953913 1.071455525 1.423187279 0.421610623 0.202583788 521.8998675 1484892.653 0.07085556 0.063487382 5.37E-07 6.270088943 0.351731754 RDPSSNDINGGMEPTPSTVSTPS(ph)PSADLLGLR ddPTM_HeLa_A485_30min_R1 3 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 0 RDPSSNDINGGMEPTPSTVS(0.004)T(0.062)PS(0.925)PS(0.009)ADLLGLR;RDPSSNDINGGMEPTPSTVSTPS(0.999)PSADLLGLR;RDPSSNDINGGMEPTPS(0.001)T(0.001)VS(0.019)T(0.078)PS(0.723)PS(0.178)ADLLGLR ;; 227.66 1.74E-39 1099420000 164623 204661 240747 191712 258328 188688 229350 188045 230491 293872 TRUE FALSE FALSE 201242.8184 228594.3236 329809.3336 202184.7411 232607.9573 198567.4119 180347.4989 141926.6689 276748.4295 220615.1187 0.912189607 1.036167988 1.494953454 0.916459136 1.05436091 0.900062575 0.817475701 0.643322496 1.25444 1 17.75117214 -5.817628197 1.916890438 0.90052587 1.129100592 0.1262294 0.208831159 0.589057701 4.457434155 0.073862081 0.092630848 1.52E-06 5.817628197 0.228574722 RDPSSNDINGGMEPTPSTVSTPS(ph)PSADLLGLR ddPTM_HeLa_A486_30min_R1 3 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 0 RDPSSNDINGGMEPT(0.001)PS(0.008)T(0.008)VS(0.251)T(0.226)PS(0.392)PS(0.114)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.076)T(0.008)PS(0.916)PSADLLGLR;RDPSSNDINGGMEPTPSTVS(0.009)T(0.026)PS(0.949)PS(0.015)ADLLGLR ;; 193.16 1.15E-21 1162790000 153409 186792 161393 63817 206503 163565 181038 171585 175031 183767 TRUE FALSE FALSE 142655.8213 171989.9216 223888.6919 148569.2011 180601.4682 143386.0133 135740.3776 132518.8412 190202.828 137750.5471 1.035609835 1.248560716 1.625319802 1.078538012 1.311076232 1.040910663 0.985407176 0.962020435 1.380777297 1 17.07169852 -6.264329739 24.60712615 1.065923388 1.269429575 0.200718853 0.184749093 333.1303309 2836096.845 0.06404722 0.059011015 5.44E-07 6.264329739 0.203506187 RDQALTEEHAR ddPTM_HeLa_A485_30min_R1 7 RDQALTEEHAR 11 1 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11 P12814-2 ACTN1 Alpha-actinin-1 0 0 ;;;;;; ;;;;;; 202.69 1.37E-14 1657637000 785168.5 1116890.9 1023600.4 755582.6 1237737.2 1029014.3 1168886.4 1362294 947613.9 1071340.9 FALSE FALSE TRUE 959826.524 1247501.575 1402272.784 796858.1642 1114503.738 1082891.898 919144.2717 1028189.261 1137791.318 804275.3302 1.193405402 1.551087704 1.743523307 0.990777827 1.385724138 1.346419388 1.142822908 1.278404574 1.414678873 1 19.61732994 -13.74281981 0.098941069 7.16E-12 1.575394452 0.209323452 0.199693189 280.6350909 1.994592242 59.4751285 3.624400354 1.81E-14 13.74281981 1.575394452 RDQALTEEHAR ddPTM_HeLa_A486_30min_R1 4 RDQALTEEHAR 11 1 P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11 P12814-2 ACTN1 Alpha-actinin-1 0 0 ;;; ;;; 176.87 9.31E-09 1251110000 791328 862667 762733 317952 1083295 785849 890519 895805 730214 823457 FALSE FALSE TRUE 735859.9936 794306.1251 1058083.644 740208.3244 947418.0398 688898.9403 667701.7273 691849.7568 793509.5375 617258.0074 1.192143293 1.286830006 1.714167547 1.199187885 1.534881732 1.116063189 1.081722261 1.120843713 1.285539479 1 19.23551412 -6.282447379 24.02780252 1.125941943 1.387878709 0.406236732 0.159879156 517.6325227 592037.2821 0.055551772 0.049050995 5.22E-07 6.282447379 0.261936766 RDRDGYSYGSR ddPTM_HeLa_A485_30min_R1 5 RDRDGYSYGSR 11 2 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 0 ;;;; ;;;; 182.25 1.47E-10 486341000 110607.6 222551 177240 81446.2 228743 225095 259990 374001 141140 103695 FALSE FALSE TRUE 135211.879 248576.4035 242808.4516 85895.39967 205968.5438 236880.6261 204441.0126 282276.6683 169465.5034 77845.74487 1.736920615 3.19319192 3.119097286 1.1034052 2.645854878 3.042948931 2.626232338 3.626102735 2.17693984 1 16.24833056 -5.965261766 24.99988367 2.68654813 2.344962816 0 0.857177053 772.5047751 555941.3297 0.260983317 0.295926056 1.08E-06 5.965261766 -0.341585314 RDRDGYSYGSR ddPTM_HeLa_A486_30min_R1 4 RDRDGYSYGSR 11 2 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80;Q13247-2 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 0 0 ;;; ;;; 134.56 2.21E-05 264192000 89143 85714.5 74819 32825 129219 72220.1 98321 108737 60374 106538 FALSE FALSE TRUE 82894.53603 78922.17085 103790.9205 76418.25888 113011.1481 63310.31834 73720.04587 83979.95881 65607.26693 79860.19135 1.03799571 0.988254217 1.299657799 0.956900523 1.415112413 0.792764421 0.923113814 1.051587248 0.821526543 1 16.28518891 -6.295309619 24.99937805 0.921354839 1.129921002 0.359391623 0.147733029 744.1933363 549281.4381 0.049880676 0.043992991 5.07E-07 6.295309619 0.208566164 RDRS(ph)PIRGS(ph)PR ddPTM_HeLa_A485_30min_R1 8 RDRSPIRGSPR 11 3 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR ;;;;;;; 107.61 0.00038402 16123769000 3963910 5369672 5438618 4442361 6637211 5415040 6351845 7045306 5147396 5464679 TRUE FALSE FALSE 4845668.104 5997608.43 7450589.118 4685035.933 5976386.968 5698563.121 4994721.426 5317433.657 6180431.162 4102435.095 1.181168743 1.461963027 1.816138207 1.14201342 1.456790133 1.389068441 1.217501633 1.296165212 1.506527469 1 21.96804908 -12.55460377 0.243782037 1.72E-17 1.430753457 0.265520051 0.188126999 109.4125765 2.061410333 55.27044979 0.29781885 2.79E-13 12.55460377 1.430753457 RDRS(ph)PIRGS(ph)PR ddPTM_HeLa_A486_30min_R1 6 RDRSPIRGSPR 11 3 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR;RDRS(1)PIRGS(1)PR ;;;;; 89.358 0.0019305 14737210000 3152909 3675983 3110380 1419349 4138654 3335684 3712692 3985958 3004063 3530248 TRUE FALSE FALSE 2931906.361 3384684.719 4314802.435 3304316.202 3619545.424 2924161.223 2783737.193 3078442.376 3264457.6 2646250.923 1.107947223 1.279049046 1.630534126 1.248678337 1.367801289 1.105020389 1.051955115 1.163322174 1.233616046 1 21.33551844 -6.26446652 24.67587816 1.117313644 1.336682869 0.385899486 0.135842468 253.7172259 2068176.234 0.048293093 0.044417555 5.44E-07 6.26446652 0.219369225 RDS(ph)ASYR ddPTM_HeLa_A485_30min_R1 5 RDSASYR 7 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 RDS(1)ASYR;RDS(1)ASYR;RDS(0.999)AS(0.001)YR;RDS(1)ASYR;RDS(0.994)AS(0.006)YR ;;;; 107.58 0.001908 1170948000 239156 215588 135127 239413 129716 242126 145012 188700 177818 193328 TRUE FALSE FALSE 292355.4271 240799.1412 185116.1004 252491.526 116801.0196 254803.343 114029.0016 142421.0291 213504.4416 145134.8875 2.014370439 1.659140303 1.275476238 1.739702495 0.804775623 1.755631243 0.785676025 0.98130113 1.471075943 1 17.14703483 -1 0.377339639 1.094214993 14.0142759 0.419179998 0.318608684 62.89016509 0.862841147 0.234015802 592.6787449 0.1 1 12.92006091 RDS(ph)ASYR ddPTM_HeLa_A486_30min_R1 2 RDSASYR 7 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 RDS(0.998)AS(0.002)YR;RDS(1)ASYR ; 107.58 0.001908 569320000 81815 59318 115075 39911.4 53434 182012 63310 70567 133066 106599 TRUE FALSE FALSE 76080.19099 54617.42565 159635.1218 92915.75621 46731.80947 159557.21 47469.16838 54500.43457 144600.268 79905.91656 0.952122124 0.683521671 1.997788508 1.162814472 0.58483541 1.996813464 0.594063249 0.682057561 1.809631555 1 16.28601471 RDS(ph)ASYRDR ddPTM_HeLa_A485_30min_R1 3 RDSASYRDR 9 2 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 RDS(0.938)AS(0.062)YRDR;RDS(0.975)AS(0.025)YRDR;RDS(0.965)AS(0.035)YRDR ;; 76.073 0.0076801 3245540000 1117996 2109430 1494290 767880 2236070 2122010 2496360 4426330 1314450 1165448 TRUE FALSE FALSE 1366690.353 2356109.489 2047090.054 809827.34 2013439.019 2233115.162 1962992.293 3340765.627 1578248.058 874923.2621 1.562068826 2.69293273 2.339736686 0.925598135 2.301274988 2.552355457 2.243616529 3.818352731 1.803870267 1 19.73879696 -5.984297461 24.86082573 2.453899408 1.926284567 0.036937712 0.796537835 586.242425 928154.7428 0.242083665 0.274414518 1.04E-06 5.984297461 -0.527614841 RDS(ph)DGVDGFEAEGK ddPTM_HeLa_A485_30min_R1 1 RDSDGVDGFEAEGK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RDS(1)DGVDGFEAEGK 172.57 1.62E-12 364020000 405100 268730 234750 566730 384820 334470 478750 349460 293180 727690 TRUE FALSE FALSE 495213.0974 300155.6359 321593.7938 597689.0249 346505.9696 351982.332 376461.1515 263754.3871 352018.5368 546290.2751 0.906501763 0.549443491 0.588686653 1.094086884 0.634289105 0.644313743 0.689122923 0.482809962 0.644380017 1 19.05930822 -10.0913359 5.35139307 1.000004284 0.6877546 0.225969034 0.170449953 8.81E-06 1.50E-06 0.166807311 0.04045616 8.10E-11 10.0913359 -0.312249685 RDS(ph)DGVDGFEAEGK ddPTM_HeLa_A486_30min_R1 2 RDSDGVDGFEAEGK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK ; 153.72 9.82E-08 544803000 399570 401450 220581 183349 355290 467590 510270 478120 333420 564920 TRUE FALSE FALSE 371562.2064 369637.6399 305995.8706 426845.7379 310726.2153 409903.4999 382595.0489 369262.5133 362321.1141 423460.355 0.877442722 0.872897865 0.722608072 1.007994569 0.733778763 0.967985539 0.903496737 0.872012005 0.855619918 1 18.69186738 -6.30937432 24.99984951 0.910803177 0.847092122 0.166225232 0.084641686 874.2321973 455942.0882 0.028414483 0.025059242 4.90E-07 6.30937432 -0.063711055 RDS(ph)DGVDGFEAEGKK ddPTM_HeLa_A485_30min_R1 3 RDSDGVDGFEAEGKK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RDS(1)DGVDGFEAEGKK;RDS(1)DGVDGFEAEGKK;RDS(1)DGVDGFEAEGKK ;; 233.89 2.87E-36 1713860000 2359750 1463530 909670 3306770 2010210 1979420 3404290 2746610 1406710 4349450 TRUE FALSE FALSE 2884668.246 1634677.102 1246194.788 3487410.472 1810066.434 2083059.37 2676935.631 2072999.591 1689023.794 3265212.161 0.883455073 0.500634269 0.381658136 1.068050191 0.554348797 0.63795529 0.819835128 0.634874394 0.517278422 1 21.6387453 -10.18531324 3.841776826 1.000230347 0.664459568 0.209722434 0.194207569 131810885.2 211198543.4 388200.5067 0.047487369 6.53E-11 10.18531324 -0.335770779 RDS(ph)DGVDGFEAEGKK ddPTM_HeLa_A486_30min_R1 2 RDSDGVDGFEAEGKK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RDS(1)DGVDGFEAEGKK;RDS(1)DGVDGFEAEGKK ; 217.17 8.17E-34 784080000 1350560 1114500 448870 731260 926980 1452470 1852470 1726460 839960 2072030 TRUE FALSE FALSE 1255892.718 1026182.961 622684.4852 1702410.236 810709.5247 1273279.019 1388962.413 1333382.746 912768.4091 1553180.201 0.808594339 0.660697941 0.400909363 1.09608031 0.52196746 0.81978834 0.89426997 0.858485542 0.587677082 1 20.56679379 -5.811192775 0.910605151 0.821622856 0.66738452 0.078741442 0.198833959 1.668677026 3.003239799 0.099047184 0.150531976 1.54E-06 5.811192775 -0.154238336 RDS(ph)DTYR ddPTM_HeLa_A485_30min_R1 1 RDSDTYR 7 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 RDS(1)DTYR 108.7 0.0018457 186020000 55343 56867 28247 72347 33387 74521 36086 48653 42642 85272 TRUE FALSE FALSE 67653.85942 63517.10097 38696.74076 76299.13342 30062.87305 78422.80433 28375.9313 36720.77547 51199.85826 64015.25971 1.056839568 0.992218125 0.604492443 1.191889774 0.469620418 1.225064222 0.443268237 0.573625345 0.799807085 1 15.96612823 -1.000027625 0.458582307 0.745239298 8.647959178 0.087662555 0.26852094 200.1618825 2.369750407 0.156383115 1488.758953 0.099993639 1.000027625 7.90271988 RDS(ph)DTYR ddPTM_HeLa_A486_30min_R1 1 RDSDTYR 7 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 RDS(0.96)DT(0.04)YR 94.465 0.0034086 179600000 39413 26872 50628 11601 36128 69429 29444 35022 56199 42472 TRUE FALSE FALSE 36650.35223 24742.56485 70232.51746 27007.71428 31596.48936 60863.55588 22076.79977 27048.25512 61070.37457 31836.73475 1.151196959 0.777170305 2.206021378 0.848319229 0.992453831 1.911739893 0.69343794 0.849592627 1.918236121 1 14.95840476 RDS(ph)ELGPGVK ddPTM_HeLa_A485_30min_R1 2 RDSELGPGVK 10 1 O95466-2;K7EK60;O95466;O95466-3;A0A0A0MR62 O95466-2 FMNL1 Formin-like protein 1 1 0 RDS(1)ELGPGVK;RDS(1)ELGPGVK ; 111.95 0.00038478 814090000 1002090 879000 715500 1432000 1121940 1002970 1607500 1336450 934750 2077300 TRUE FALSE FALSE 1225001.463 981791.4037 980193.2244 1510226.534 1010235.714 1055483.958 1264044.493 1008683.542 1122345.751 1559467.34 0.785525565 0.629568429 0.628543605 0.968424599 0.64780819 0.676823382 0.810561697 0.646812868 0.719698145 1 20.57262191 -10.17914112 5.448426652 1.000009366 0.722054183 0.399767533 0.101530055 1.14E-05 1.71E-06 0.096653252 0.023441067 6.62E-11 10.17914112 -0.277955184 RDS(ph)ELGPGVK ddPTM_HeLa_A486_30min_R1 1 RDSELGPGVK 10 1 O95466-2;K7EK60;O95466;O95466-3;A0A0A0MR62 O95466-2 FMNL1 Formin-like protein 1 1 0 RDS(1)ELGPGVK 70.26 0.0081235 379500000 1375400 1388300 797430 550220 1310200 1511100 1766500 1753700 1135000 1808700 TRUE FALSE FALSE 1278991.563 1278286.052 1106216.252 1280939.967 1145862.499 1324675.846 1324503.016 1354420.793 1233382.714 1355789.747 0.943355388 0.942835019 0.815920207 0.944792487 0.845162387 0.977051087 0.976923611 0.99899029 0.909715327 1 20.37070204 -6.290470993 24.19294019 0.972747197 0.898874674 0.392849346 0.046072057 505.9064541 421585.4678 0.015812339 0.013947891 5.12E-07 6.290470993 -0.073872523 RDS(ph)FDDR ddPTM_HeLa_A485_30min_R1 3 RDSFDDR 7 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(1)FDDR;RDS(1)FDDR;RDS(1)FDDR ;; 113.03 0.0016045 1115450000 1398180 1436790 1347150 1632300 1470810 1124700 1347990 1067980 1181140 1676550 TRUE FALSE FALSE 1709200.317 1604810.092 1845516.845 1721468.416 1324370.992 1183587.553 1059980.924 806056.2305 1418183.964 1258616.94 1.357998819 1.275058393 1.466305423 1.367746104 1.052243101 0.940387433 0.842179134 0.640430146 1.126779657 1 20.26340783 -5.931163892 2.413589729 0.88275428 1.372096662 0.746356106 0.125276425 0.139472623 1.649690505 0.043081346 0.049129342 1.17E-06 5.931163892 0.489342381 RDS(ph)FDDR ddPTM_HeLa_A486_30min_R1 4 RDSFDDR 7 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(1)FDDR;RDS(1)FDDR;RDS(1)FDDR;RDS(1)FDDR ;;; 121.36 0.0011402 1841440000 1860270 2062880 1403950 572564 1649210 1858890 1809960 1738530 1789430 1855490 TRUE FALSE FALSE 1729874.679 1899409.876 1947597.039 1332957.928 1442350.704 1629559.052 1357088.864 1342704.671 1944539.233 1390863.227 1.243741761 1.36563383 1.400279338 0.958367366 1.037018361 1.171617036 0.975716978 0.96537506 1.398080843 1 20.40754913 -5.254884782 24.99578031 1.069510598 1.339459874 0.463232658 0.130311909 451.5588495 1722003.26 0.034962228 0.058799447 5.56E-06 5.254884782 0.269949277 RDS(ph)FDDRGPSLNPVLDYDHGS(ph)R ddPTM_HeLa_A485_30min_R1 1 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 2 0 RDS(0.904)FDDRGPS(0.096)LNPVLDYDHGS(1)R 112.65 7.40E-05 116970000 18105 21874 21083 18268 23798 20304 24320 23762 18651 23461 TRUE FALSE FALSE 22132.39479 24431.97402 28882.47904 19265.93458 21428.58756 21367.08604 19123.83332 17934.33224 22394.08462 17612.60447 1.256622485 1.38718689 1.639875527 1.093871983 1.216662056 1.213170152 1.085803826 1.018266905 1.271480584 1 14.10432064 -5.285857497 24.99791829 1.134652875 1.423824185 0.567388524 0.119714498 551.1241266 564209.1835 0.03377937 0.050129581 5.18E-06 5.285857497 0.28917131 RDS(ph)FDDRGPSLNPVLDYDHGS(ph)R ddPTM_HeLa_A486_30min_R1 1 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 2 0 RDS(0.915)FDDRGPS(0.085)LNPVLDYDHGS(1)R 71.068 0.0043561 72482000 35129 34566 31950 11432 44758 36275 45273 44299 30822 47473 TRUE FALSE FALSE 32666.63851 31826.86427 44321.89565 26614.27374 39144.03429 31799.75932 33945.21655 34213.08474 33493.67578 35585.4518 0.917977343 0.894378536 1.245506054 0.747897593 1.100001048 0.893616849 0.95390714 0.961434603 0.941218225 1 15.11899993 RDS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_HeLa_A485_30min_R1 5 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(0.999)FDDRGPS(0.001)LNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(0.862)FDDRGPS(0.138)LNPVLDYDHGSR;RDS(0.996)FDDRGPS(0.004)LNPVLDYDHGSR ;;;; 259.25 1.40E-59 56770720000 3791701 7000530 7252390 1709006 8651280 4523640 6040870 6419600 5283490 3672830 TRUE FALSE FALSE 4635151.806 7819181.087 9935350.858 1802364.67 7789928.187 4760490.796 4750188.775 4845183.034 6343837.98 2757261.074 1.681071063 2.835850823 3.60334063 0.653679366 2.825241418 1.726528851 1.722792527 1.757244927 2.300775229 1 21.39480445 -9.071981473 0.127051634 1.89E-09 3.016439942 0.177175488 0.767800337 37.47610813 1.524110155 25.06007275 10.19269968 8.47E-10 9.071981473 3.01643994 RDS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_HeLa_A486_30min_R1 6 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(0.981)FDDRGPS(0.019)LNPVLDYDHGSR;RDS(0.997)FDDRGPS(0.003)LNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR;RDS(1)FDDRGPSLNPVLDYDHGSR ;;;;; 309.78 1.51E-102 18265880000 4804870 4887760 4635000 272520.75 6272750 3293330 4011920 4004160 4597020 1872572 TRUE FALSE FALSE 4468073.425 4500436.097 6429796.13 634442.0784 5485963.204 2887032.429 3008095.182 3092500.178 4995493.395 1403667.783 3.183141681 3.206197472 4.58071077 0.451988773 3.90830599 2.056777582 2.143025023 2.20315677 3.558885839 1 20.42077009 -5.233002547 24.99896407 2.303236313 3.611634474 0.293379859 1.032568177 989.2313088 869637.2148 0.264865011 0.45864723 5.85E-06 5.233002547 1.30839816 RDS(ph)FDNCSLGESSK ddPTM_HeLa_A485_30min_R1 4 RDSFDNCSLGESSK 14 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 RDS(1)FDNCSLGESSK;RDS(1)FDNCSLGESSK;RDS(1)FDNCSLGESSK;RDS(1)FDNCSLGESSK ;;; 226.29 3.54E-28 2073180000 2523760 1818070 1992670 4032140 3495700 2025580 3272140 3066150 2909180 5575800 TRUE FALSE FALSE 3085161.705 2030677.471 2729841.555 4252405.598 3147655.834 2131636.237 2573020.558 2314171.905 3493025.741 4185855.675 0.737044453 0.485128401 0.652158547 1.015898762 0.751974286 0.509247428 0.614694045 0.552855159 0.834483081 1 21.99709114 -7.997968869 5.621640845 0.999758724 0.666894611 0.3568797 0.144210079 0.156324515 20.00099836 0.150036423 0.038995527 1.00E-08 7.997968869 -0.332864113 RDS(ph)FDNCSLGESSK ddPTM_HeLa_A486_30min_R1 3 RDSFDNCSLGESSK 14 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 RDS(1)FDNCSLGESSK;RDS(1)FDNCSLGESSK;RDS(1)FDNCSLGESSK ;; 190.83 5.61E-18 1456590000 2002530 2244000 1260170 1232460 2250710 2586370 3188660 2926230 1917920 2816610 TRUE FALSE FALSE 1862162.988 2066177.267 1748141.573 2869229.165 1968404.965 2267289.966 2390823.542 2259991.308 2084166.85 2111312.523 0.881993058 0.978622182 0.827988066 1.358978898 0.932313404 1.073877004 1.132387326 1.070420075 0.98714275 1 21.00970872 RDS(ph)FIGTPYWMAPEVVMCETMK ddPTM_HeLa_A485_30min_R1 1 RDSFIGTPYWMAPEVVMCETMK 22 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 RDS(0.996)FIGT(0.004)PYWMAPEVVMCETMK 194.27 1.97E-20 288550000 134700 77289 60897 174640 94410 111800 178630 123730 67775 244360 TRUE FALSE FALSE 164663.5503 86327.27623 83425.33444 184180.141 85010.20891 117653.6751 140464.2412 93385.0235 81376.82083 183445.5491 0.897615402 0.470588012 0.454768921 1.004004414 0.463408403 0.641354755 0.765699914 0.509061266 0.443602046 1 17.48499238 -11.06411803 2.515980163 1.543318011 0.625270444 0.255428048 0.190603009 47552759.61 16176530.83 148381531.4 0.047356599 8.63E-12 11.06411803 -0.918047567 RDS(ph)FIGTPYWMAPEVVMCETMK ddPTM_HeLa_A486_30min_R1 3 RDSFIGTPYWMAPEVVMCETMK 22 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 RDS(1)FIGTPYWMAPEVVMCETMK;RDS(0.771)FIGT(0.227)PY(0.002)WMAPEVVMCETMK;RDS(0.722)FIGT(0.148)PY(0.13)WMAPEVVMCETMK ;; 230.3 1.11E-36 532335000 165472.9 243628 142801.6 120781.9 218377 302395 369860 293274 224552 327076 TRUE FALSE FALSE 153874.1042 224322.03 198098.2039 281186.3672 190986.1204 265088.5794 277317.116 226501.9123 244016.3482 245174.0407 0.627611732 0.914950169 0.807990125 1.146884745 0.77898182 1.081226131 1.131103094 0.923841332 0.995278079 1 17.90344671 -3.663057891 0.800867911 1.006233402 1.53E-14 0.49087488 0.11230892 5.025681925 1.261303728 0.039813872 5.619794394 0.000217241 3.663057891 -1.006233402 RDS(ph)FIGTPYWMAPEVVMCETMKDTPYDYK ddPTM_HeLa_A485_30min_R1 2 RDSFIGTPYWMAPEVVMCETMKDTPYDYK 29 2 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 RDS(0.942)FIGT(0.057)PY(0.001)WMAPEVVMCETMKDTPYDYK;RDS(0.674)FIGT(0.175)PY(0.151)WMAPEVVMCETMKDTPYDYK ; 103.15 0.00019062 128179000 70573 28067 25590 108142 64879 73827 140649 105735 39812 164408 TRUE FALSE FALSE 86271.72038 31349.1915 35056.80589 114049.5236 58419.41896 77692.46756 110598.1922 79803.32546 47801.90322 123424.1113 0.698985956 0.253995683 0.284035311 0.924045735 0.473322581 0.629475608 0.896082548 0.646578084 0.387297933 1 16.91326473 -5.245746474 24.99148493 0.688161105 0.396504648 0.280388525 0.215038815 1077.354513 1715721.358 0.057069964 0.098417143 5.68E-06 5.245746474 -0.291656456 RDS(ph)FIGTPYWMAPEVVMCETMKDTPYDYK ddPTM_HeLa_A486_30min_R1 1 RDSFIGTPYWMAPEVVMCETMKDTPYDYK 29 2 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 RDS(0.965)FIGT(0.032)PY(0.004)WMAPEVVMCETMKDTPYDYK 164.29 2.53E-14 69461000 10899 19397 10671 18365 24807 29442 44724 42703 16934 35939 TRUE FALSE FALSE 10135.03638 17859.91108 14803.09698 42754.64812 21695.47474 25809.74538 33533.58216 32980.4591 18401.85275 26939.64048 0.376212756 0.662960261 0.54949126 1.587053404 0.805336462 0.958058271 1.244767249 1.22423531 0.683077147 1 14.71744298 -5.120531223 14.95149794 1.072491219 0.541245054 0.50664956 0.245131634 0.9006063 107.1186923 0.064481716 0.111698022 7.58E-06 5.120531223 -0.531246166 RDS(ph)FIGTPYWMAPEVVMCETSK ddPTM_HeLa_A485_30min_R1 8 RDSFIGTPYWMAPEVVMCETSK 22 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RDS(0.772)FIGT(0.211)PY(0.018)WMAPEVVMCETSK;RDS(0.985)FIGT(0.008)PY(0.007)WMAPEVVMCETSK;RDS(0.999)FIGT(0.001)PYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(0.99)FIGT(0.007)PY(0.003)WMAPEVVMCETSK ;;;;;;; 318.8 9.13E-103 5018631000 2261451 1585452 1416954 3086114 2574985 2086187 3230877 2911281 1722385 3990740 TRUE FALSE FALSE 2764502.973 1770856.82 1941144.249 3254700.593 2318610.452 2195416.525 2540573.735 2197284.77 2068051.871 2995921.962 0.922755335 0.591089101 0.647928842 1.08637696 0.773922179 0.732801639 0.848010652 0.733425235 0.690288965 1 21.51456861 -11.33332317 2.384915353 2.377046555 0.779216216 0.189899738 0.13583051 7490449.217 1909521.175 54972831.94 0.035093131 4.64E-12 11.33332317 -1.59783034 RDS(ph)FIGTPYWMAPEVVMCETSK ddPTM_HeLa_A486_30min_R1 10 RDSFIGTPYWMAPEVVMCETSK 22 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RDS(1)FIGTPYWMAPEVVMCETSK;RDS(0.994)FIGT(0.004)PY(0.002)WMAPEVVMCETSK;RDS(0.86)FIGT(0.073)PY(0.067)WMAPEVVMCETSK;RDS(0.993)FIGT(0.005)PY(0.002)WMAPEVVMCETSK;RDS(0.998)FIGT(0.002)PYWMAPEVVMCETSK;RDS(1)FIGTPYWMAPEVVMCETSK;RDS(0.996)FIGT(0.004)PYWMAPEVVMCETSK;RDS(0.972)FIGT(0.015)PY(0.013)WMAPEVVMCETSK;RDS(0.876)FIGT(0.112)PY(0.012)WMAPEVVMCETSK;RDS(0.998)FIGT(0.002)PYWMAPEVVMCETSK ;;;;;;;;; 243.75 4.41E-47 6062900000 910076.3 1138518.2 710381 612312.5 1180585.3 1359143 1655473.2 1539844.2 992199.6 1516046.9 TRUE FALSE FALSE 846284.651 1048297.871 985459.5479 1425494.445 1032505.283 1191465.755 1241256.296 1189255.29 1078204.26 1136418.888 0.744694284 0.922457275 0.867162239 1.254374121 0.908560473 1.048438888 1.092252433 1.046493773 0.948773618 1 20.11606329 -4.620621398 1.577656927 1.03860454 0.747583483 0.445314368 0.098458715 0.502421197 1.928718346 0.027517124 0.184709546 2.40E-05 4.620621398 -0.291021057 RDS(ph)FIGTPYWMAPEVVMCETSKDRPYDYK ddPTM_HeLa_A485_30min_R1 1 RDSFIGTPYWMAPEVVMCETSKDRPYDYK 29 3 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RDS(0.999)FIGT(0.001)PYWMAPEVVMCETSKDRPYDYK 109.84 0.00021313 95751000 35349 40264 27697 26561 57008 71990 120480 145700 31493 39833 TRUE FALSE FALSE 43212.2631 44972.52455 37943.27287 28011.96017 51332.08335 75759.28508 94738.46377 109966.8466 37813.35623 29903.36617 1.445063504 1.503928497 1.268862932 0.936749395 1.716598829 2.533470133 3.16815382 3.677406949 1.264518383 1 14.86802027 -6.135246116 3.500120295 2.549636204 1.304296818 0.267247808 0.769581825 0.275510588 6.185204645 0.260697332 0.262055943 7.32E-07 6.135246116 -1.245339387 RDS(ph)FSGVK ddPTM_HeLa_A486_30min_R1 1 RDSFSGVK 8 1 Q14865;Q14865-2;Q14865-3 Q14865 ARID5B AT-rich interactive domain-containing protein 5B 1 0 RDS(1)FSGVK 130.16 0.00032375 227580000 264540 296360 163230 105300 230900 309670 364280 350690 249030 354590 TRUE FALSE FALSE 245997.1121 272875.3543 226437.0275 245143.7216 201938.3689 271466.0639 273133.291 270845.5425 270616.1209 265798.356 0.92550276 1.02662544 0.851912822 0.922292091 0.759742731 1.021323337 1.027595863 1.01898878 1.018125638 1 18.01997266 -6.407620054 20.52344359 1.019102756 0.901996828 0.474673806 0.062997448 5.287625375 926.445845 0.022741518 0.02005608 3.91E-07 6.407620054 -0.117105927 RDS(ph)GDNSAPSGQER ddPTM_HeLa_A485_30min_R1 2 RDSGDNSAPSGQER 14 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RDS(1)GDNSAPSGQER;RDS(0.897)GDNS(0.103)APSGQER ; 232.68 2.68E-28 1109070000 531990 589860 547540 621390 699850 529650 687900 703780 540590 775910 TRUE FALSE FALSE 650329.3402 658838.9959 750097.831 655334.9623 630170.4767 557381.655 540924.5454 531176.8515 649081.4544 582489.9166 1.116464546 1.13107365 1.28774389 1.125058037 1.081856456 0.956894942 0.928641904 0.911907376 1.114322216 1 19.15187355 -5.95707087 2.324436084 0.973995921 1.174297971 0.613344223 0.068369841 0.195521136 2.138753857 0.024421476 0.027427904 1.10E-06 5.95707087 0.200302051 RDS(ph)GDNSAPSGQER ddPTM_HeLa_A486_30min_R1 3 RDSGDNSAPSGQER 14 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RDS(0.594)GDNS(0.406)APSGQER;RDS(0.999)GDNS(0.001)APSGQER;RDS(0.999)GDNS(0.001)APSGQER ;; 242.44 6.02E-35 696290000 667127 698718 508585 221977 636790 669529 695474 678671 578279 703308 TRUE FALSE FALSE 620364.8423 643349.041 705522.7324 516773.6741 556917.8604 586929.3193 521459.0492 524152.4286 628404.6893 527195.099 1.176727256 1.220324396 1.338257381 0.980232318 1.056379055 1.11330572 0.989119683 0.994228568 1.191977487 1 19.00797743 -5.266598562 24.99993254 1.047031728 1.242625151 0.613039089 0.072312107 277.6954371 1345634.313 0.020051979 0.030797428 5.41E-06 5.266598562 0.195593422 RDS(ph)GDNSAPSGQEREDHGLETGDPPLPPPPVLPGPGEELPGAR ddPTM_HeLa_A485_30min_R1 1 RDSGDNSAPSGQEREDHGLETGDPPLPPPPVLPGPGEELPGAR 43 2 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RDS(0.25)GDNS(0.25)APS(0.25)GQEREDHGLET(0.25)GDPPLPPPPVLPGPGEELPGAR 131.35 1.60E-08 134870000 16314 35065 31210 28039 65199 41463 57340 77950 38095 45596 TRUE FALSE FALSE 19942.99302 39165.54673 42755.87776 29570.69957 58707.55863 43633.93857 45088.84058 58832.64028 45740.31707 34229.75633 0.58262153 1.144195896 1.249085075 0.863888696 1.715103025 1.274737049 1.317241062 1.718757204 1.336273523 1 15.0629634 -3.999952177 0.745830604 1.390268628 6.96E-14 0.419773929 0.253543203 3.723002432 1.215257136 0.098342166 4.729660041 0.000100011 3.999952177 -1.390268628 RDS(ph)IVAELDR ddPTM_HeLa_A485_30min_R1 2 RDSIVAELDR 10 1 M0QXB4;O14579-3;O14579 M0QXB4 COPE Coatomer subunit epsilon 1 0 RDS(1)IVAELDR;RDS(1)IVAELDR ; 174.47 7.91E-08 347482000 117793 147660 151857 179200 189056 161913 162604 174617 142297 171648 TRUE FALSE FALSE 143995.6465 164927.5525 208035.2236 188989.2422 170232.9208 170390.5143 127862.327 131791.907 170854.7027 128859.3125 1.117464028 1.279904023 1.614436857 1.466632395 1.321075811 1.3222988 0.992262992 1.02275811 1.325901088 1 16.97543728 -6.654365192 5.605642555 1.088265922 1.37013544 0.438025164 0.148928096 0.21005203 9.620479281 0.061318517 0.046929273 2.22E-07 6.654365192 0.281869519 RDS(ph)IVAELDR ddPTM_HeLa_A486_30min_R1 3 RDSIVAELDR 10 1 M0QXB4;O14579-3;O14579 M0QXB4 COPE Coatomer subunit epsilon 1 0 RDS(1)IVAELDR;RDS(1)IVAELDR;RDS(1)IVAELDR ;; 194.77 1.23E-10 332357000 199633 251125 192513 114976 304738 247084 276941 275325 187399 293965 TRUE FALSE FALSE 185639.7576 231224.9404 267059.1893 267669.9386 266514.9185 216601.2882 207647.4326 212639.5078 203642.8962 220354.2506 0.842460525 1.049332789 1.211953881 1.214725551 1.2094839 0.982968505 0.942334591 0.964989362 0.924161416 1 17.7494652 -6.416271484 6.61288822 0.956012213 1.114048384 0.316615296 0.104904348 0.315498141 16.95907969 0.040563205 0.03560397 3.83E-07 6.416271484 0.158036171 RDS(ph)LDKSGLFPEWK ddPTM_HeLa_A485_30min_R1 1 RDSLDKSGLFPEWK 14 2 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 RDS(1)LDKSGLFPEWK 181.34 1.09E-17 434460000 170520 120520 80359 258990 189580 168580 252170 245750 139760 413590 TRUE FALSE FALSE 208451.5857 134613.7656 110087.1381 273137.9679 170704.7495 177406.5881 198291.8195 185479.4272 167808.55 310489.6246 0.671364095 0.433553185 0.354559797 0.87970079 0.549792122 0.571376864 0.638642337 0.597377215 0.540464276 1 18.24418553 -14 0.374203238 6.674787888 0.570236874 0.467473866 0.133374874 513.9797099 3.932065627 2361.76241 0.094213991 1.00E-14 14 -6.104551014 RDS(ph)LDKSGLFPEWK ddPTM_HeLa_A486_30min_R1 3 RDSLDKSGLFPEWK 14 2 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 RDS(0.993)LDKS(0.007)GLFPEWK;RDS(1)LDKSGLFPEWK;RDS(0.999)LDKS(0.001)GLFPEWK ;; 217.4 5.82E-28 657100000 907610 738790 380205 460934 824620 976540 1225730 1182770 654520 1287630 TRUE FALSE FALSE 843991.2259 680245.5898 527430.5582 1073077.646 721188.4703 856064.4235 919039.3896 913479.0907 711254.3206 965199.0669 0.874421925 0.704772324 0.546447439 1.111768218 0.747191429 0.88693043 0.952176003 0.946415224 0.736899097 1 19.880467 -5.252928278 24.99981543 0.903202264 0.708169756 0.345387534 0.127750429 740.4884367 2175045.599 0.033922289 0.05758498 5.59E-06 5.252928278 -0.195032508 RDS(ph)LEEGELR ddPTM_HeLa_A485_30min_R1 6 RDSLEEGELR 10 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;A0A087WYI9;A0A087X1I0;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 RDS(1)LEEGELR;RDS(1)LEEGELR;RDS(1)LEEGELR;RDS(1)LEEGELR;RDS(1)LEEGELR;RDS(1)LEEGELR ;;;;; 198.74 6.15E-14 2160970000 1602332 1639350 1690920 2082270 2036310 1553300 1885200 1586760 1752080 2445650 TRUE FALSE FALSE 1958765.225 1831057.722 2316461.673 2196019.138 1833567.826 1634628.386 1482411.619 1197604.622 2103706.385 1835994.464 1.066868808 0.997311135 1.261693169 1.196092461 0.998678298 0.890323156 0.807416171 0.652292066 1.145813033 1 20.80813028 -6.045995153 3.147431738 0.872329772 1.129388197 0.377077478 0.137309533 0.253070222 5.023465128 0.047457373 0.049978128 9.00E-07 6.045995153 0.257058424 RDS(ph)LEEGELR ddPTM_HeLa_A486_30min_R1 4 RDSLEEGELR 10 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;A0A087WYI9;A0A087X1I0;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 RDS(1)LEEGELR;RDS(1)LEEGELR;RDS(1)LEEGELR;RDS(1)LEEGELR ;;; 219.41 3.77E-17 3333290000 2138980 2487520 1675600 724930 1929400 2280620 2193280 2098930 2200470 2469570 TRUE FALSE FALSE 1989048.548 2290399.856 2324437.194 1687673.676 1687396.661 1999260.292 1644498.146 1621049.458 2391208.511 1851173.598 1.074479752 1.237269081 1.255655978 0.911677694 0.911528051 1.079996114 0.888354365 0.875687434 1.2917257 1 20.82000876 -5.259561217 24.99974033 0.984686417 1.193948357 0.337479576 0.124656291 178.7188781 2378870.353 0.03386428 0.055008801 5.50E-06 5.259561217 0.20926194 RDS(ph)LGAYASQDANEQGQDLGK ddPTM_HeLa_A485_30min_R1 2 RDSLGAYASQDANEQGQDLGK 21 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(0.994)LGAY(0.006)ASQDANEQGQDLGK;RDS(1)LGAYASQDANEQGQDLGK ; 275.6 8.18E-73 436560000 313140 178704 156346 493860 281300 179548 280840 182729 226510 632520 TRUE FALSE FALSE 382796.9127 199601.8783 214184.8915 520838.3213 253292.7843 188948.8556 220836.2397 137914.4262 271968.4793 474844.4047 0.806152308 0.420352175 0.451063315 1.096861027 0.5334227 0.39791741 0.465070742 0.2904413 0.572752836 1 18.85709533 -8.057464249 22.28625506 1.000000003 0.550366425 0.262962312 0.221181328 9466.832338 3671499.315 0.222264125 0.05738835 8.76E-09 8.057464249 -0.449633578 RDS(ph)LGAYASQDANEQGQDLGK ddPTM_HeLa_A486_30min_R1 2 RDSLGAYASQDANEQGQDLGK 21 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(1)LGAYASQDANEQGQDLGK;RDS(1)LGAYASQDANEQGQDLGK ; 343.39 2.08E-115 793860000 609250 762730 375840 250980 552230 834540 811820 768230 688140 756880 TRUE FALSE FALSE 566544.7212 702288.497 521375.3133 584294.1238 482964.1641 731582.9398 608694.0494 593320.7993 747788.5293 567352.3215 0.998576545 1.237834887 0.918962157 1.029861167 0.851259695 1.289468487 1.072867822 1.045771343 1.318032025 1 19.11388539 -6.266754392 24.99277818 1.143566126 1.016452311 0.213898693 0.131606113 806.8945178 3794251.605 0.045051833 0.040911653 5.41E-07 6.266754392 -0.127113815 RDS(ph)LGAYASQDANEQGQDLGKR ddPTM_HeLa_A485_30min_R1 3 RDSLGAYASQDANEQGQDLGKR 22 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(1)LGAYASQDANEQGQDLGKR;RDS(0.997)LGAY(0.003)AS(0.001)QDANEQGQDLGKR;RDS(0.998)LGAYAS(0.002)QDANEQGQDLGKR ;; 136.49 5.74E-07 3158990000 608009 505482 398610 742740 694540 523990 759380 642740 503653 1040090 TRUE FALSE FALSE 743258.5044 564593.7228 546072.4265 783314.0055 625389.1589 551425.3062 597132.2594 485107.0072 604731.5373 780814.7044 0.951901264 0.723082851 0.699362376 1.003200889 0.800944392 0.706217881 0.764755397 0.621283135 0.774487896 1 19.5746207 -6.007153767 24.96911232 0.749635199 0.834952026 0.049502857 0.124407474 843.0361273 2942499.602 0.038636321 0.042116077 9.84E-07 6.007153767 0.085316827 RDS(ph)LGAYASQDANEQGQDLGKR ddPTM_HeLa_A486_30min_R1 4 RDSLGAYASQDANEQGQDLGKR 22 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(0.999)LGAYAS(0.001)QDANEQGQDLGKR;RDS(0.985)LGAY(0.001)AS(0.014)QDANEQGQDLGKR;RDS(0.994)LGAY(0.002)AS(0.004)QDANEQGQDLGKR;RDS(1)LGAYASQDANEQGQDLGKR ;;; 124.82 1.93E-06 3504960000 1224410 1289400 686210 580560 1108010 1443020 1545250 1461130 989870 1708620 TRUE FALSE FALSE 1138585.182 1187223.248 951928.8893 1351573.02 969033.054 1264994.864 1158612.106 1128462.595 1075672.729 1280770.431 0.888984594 0.926960226 0.743247085 1.055281249 0.756601676 0.987682752 0.904621217 0.881081081 0.839863806 1 20.28858048 -5.236608157 24.99766222 0.908557631 0.860453646 0.087729832 0.091490303 2547.891006 2564966.483 0.023394577 0.040494576 5.80E-06 5.236608157 -0.048103985 RDS(ph)LGTYSSR ddPTM_HeLa_A485_30min_R1 4 RDSLGTYSSR 10 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(1)LGTYSSR;RDS(1)LGTYSSR;RDS(1)LGTYSSR;RDS(1)LGTYSSR ;;; 171.21 1.43E-07 3346230000 272063 305585 379952 269798 395904 269739 289324 285270 312560 376271 TRUE FALSE FALSE 332582.4757 341320.5075 520512.0559 284536.3816 356486.4077 283862.1169 227507.5638 215307.0852 375287.925 282473.5645 1.177393277 1.208327258 1.842692986 1.007302691 1.262016884 1.00491569 0.805411877 0.762220301 1.328577156 1 18.10775633 -5.93352983 1.570821089 0.955380211 1.364130896 0.303087212 0.244874539 0.450508941 2.285267323 0.095703072 0.112276956 1.17E-06 5.93352983 0.408750684 RDS(ph)LGTYSSR ddPTM_HeLa_A486_30min_R1 4 RDSLGTYSSR 10 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(1)LGTYSSR;RDS(1)LGTYSSR;RDS(1)LGTYSSR;RDS(1)LGTYSSR ;;; 170.26 1.62E-07 4801940000 177557 248166 221216 58641.7 236290 206283 222744 221209 225407 187117 TRUE FALSE FALSE 165111.1712 228500.4224 306876.7596 136520.8412 206652.3049 180833.9008 167011.0953 170844.5397 244945.4602 140261.6853 1.177165174 1.629100791 2.187887298 0.973329537 1.473333965 1.289260859 1.190710741 1.218041401 1.746346194 1 17.09776144 -5.28401557 24.99890365 1.28518399 1.661156263 0.254525705 0.308678609 1112.821293 1232238.709 0.08606064 0.127745943 5.20E-06 5.28401557 0.375972273 RDS(ph)LTGSSDLYK ddPTM_HeLa_A485_30min_R1 4 RDSLTGSSDLYK 12 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RDS(0.948)LT(0.044)GS(0.008)S(0.001)DLYK;RDS(0.945)LT(0.055)GSSDLYK;RDS(0.966)LT(0.034)GSSDLYK;RDS(0.997)LT(0.003)GSSDLYK ;;; 190.18 1.98E-13 2332000000 2688990 1863730 1635930 3565710 2901900 2111730 3012100 2189450 2194460 4712210 TRUE FALSE FALSE 3287146.549 2081677.011 2241128.584 3760495.708 2612976.647 2222296.917 2368540.228 1652483.955 2634867.993 3537542.769 0.929217472 0.588452818 0.633526923 1.063024804 0.738641712 0.628203548 0.669543913 0.467127626 0.744830004 1 21.75431616 -6.004872397 24.999999 0.668479545 0.791644494 0.050491042 0.177978288 549.2681281 2818286.023 0.055650269 0.061451732 9.89E-07 6.004872397 0.123164949 RDS(ph)LTGSSDLYK ddPTM_HeLa_A486_30min_R1 3 RDSLTGSSDLYK 12 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RDS(0.998)LT(0.002)GSSDLYK;RDS(1)LTGSSDLYK;RDS(0.997)LT(0.003)GSSDLYK ;; 218.39 3.82E-23 2414980000 2732560 2826880 1677280 1086060 2617000 3207350 3547650 3306020 2506550 3521780 TRUE FALSE FALSE 2541021.655 2602867.733 2326767.735 2528402.566 2288751.457 2811659.767 2659990.447 2553311.416 2723819.772 2639903.365 0.962543436 0.985970838 0.881383677 0.957763303 0.866983045 1.065061625 1.007609022 0.967198819 1.031787681 1 21.33205369 -6.26699281 24.99784668 1.011861203 0.93272504 0.509598834 0.040853353 420.9725274 1894932.376 0.014203309 0.012890315 5.41E-07 6.26699281 -0.079136163 RDS(ph)LTGSSDLYKR ddPTM_HeLa_A485_30min_R1 4 RDSLTGSSDLYKR 13 2 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RDS(1)LTGSSDLYKR;RDS(0.843)LT(0.114)GS(0.034)S(0.009)DLYKR;RDS(0.543)LT(0.185)GS(0.136)S(0.136)DLYKR;RDS(1)LTGSSDLYKR ;;; 119.46 5.02E-05 5001350000 2033170 1972280 1484110 2160820 2788130 2438650 3463140 3767830 1795420 2911190 TRUE FALSE FALSE 2485441.652 2202920.989 2033144.048 2278860.125 2510533.987 2566333.943 2723211.848 2843763.785 2155744.325 2185483.909 1.137250035 1.00797859 0.930294677 1.042725648 1.148731398 1.174263481 1.246045252 1.301205546 0.98639222 1 21.05952133 -5.750985006 3.956872778 1.166191009 1.01820224 0.206358558 0.103310493 0.272520097 9.451960231 0.031968504 0.039634626 1.77E-06 5.750985006 -0.147988769 RDS(ph)LTGSSDLYKR ddPTM_HeLa_A486_30min_R1 4 RDSLTGSSDLYKR 13 2 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RDS(0.806)LT(0.152)GS(0.031)S(0.009)DLYKR;RDS(0.585)LT(0.284)GS(0.065)S(0.065)DLYKR;RDS(0.68)LT(0.229)GS(0.077)S(0.014)DLYKR;RDS(0.883)LT(0.064)GS(0.017)S(0.035)DLYKR ;;; 90.385 0.0011271 3713830000 1255730 1101637 643417 601685 1206840 1301190 1550630 1540720 864264 1680030 TRUE FALSE FALSE 1167709.812 1014339.272 892565.2937 1400753.087 1055466.874 1140662.407 1162645.973 1189931.69 939179.0994 1259339.553 0.927239845 0.805453358 0.708756659 1.112291823 0.83811143 0.905762393 0.923218818 0.944885505 0.745771144 1 20.2642359 -5.215850247 24.99999488 0.917588038 0.812980384 0.193609627 0.102679174 753.1701192 413019.4368 0.02698169 0.046733462 6.08E-06 5.215850247 -0.104607654 RDS(ph)PLQGSGQQNSQAGQR ddPTM_HeLa_A485_30min_R1 3 RDSPLQGSGQQNSQAGQR 18 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR ;; 288.58 1.70E-70 1158302000 267916.6 282533 257370 282060 333358 288579 338313 360873 248756.5 423005 TRUE FALSE FALSE 327513.7234 315572.7766 352581.8731 297468.2236 300167.707 303688.5502 266029.6638 272368.3309 298679.6478 317557.6383 1.031352057 0.993749602 1.110292528 0.936737737 0.945238504 0.956325761 0.837736624 0.857697306 0.940552554 1 18.27665895 -5.413778946 6.03761075 0.915544739 1.039544761 0.527365573 0.051891861 0.184231912 8.749899122 0.015175551 0.022593557 3.86E-06 5.413778946 0.124000022 RDS(ph)PLQGSGQQNSQAGQR ddPTM_HeLa_A486_30min_R1 4 RDSPLQGSGQQNSQAGQR 18 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR ;;; 298.11 5.69E-79 774001000 372082 404424 325182 158358.4 464579 389203 414682 446862 389683 439187 TRUE FALSE FALSE 346000.9732 372375.9694 451101.1791 368666.3582 406307.1698 341187.091 310924.1775 345121.2775 423461.0362 329211.7166 1.050998357 1.131113963 1.370246429 1.1198458 1.234181985 1.036375906 0.944450522 1.048326229 1.286287865 1 18.32865616 -6.268882029 24.52892912 1.05869364 1.185575878 0.209869059 0.11435233 723.1563102 2383318.72 0.040974122 0.036865936 5.38E-07 6.268882029 0.126882237 RDS(ph)PPPPAR ddPTM_HeLa_A485_30min_R1 6 RDSPPPPAR 9 1 O96013;O96013-2;O96013-4;M0R2X4 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR ;;;;; 98.407 0.0012861 5729179000 1858966 1746187 1417362 2133372 2044981 2953307 1942589 2128417 1434352 2637239 TRUE FALSE FALSE 2272486.573 1950388.38 1941703.185 2249912.71 1841375.511 3107937.588 1527538.991 1606419.394 1722213.29 1979823.852 1.147822606 0.985132277 0.980745425 1.136420651 0.930070374 1.569805104 0.771552979 0.811395111 0.86988208 1 20.91694065 RDS(ph)PPPPAR ddPTM_HeLa_A486_30min_R1 4 RDSPPPPAR 9 1 O96013;O96013-2;O96013-4;M0R2X4 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR;RDS(1)PPPPAR ;;; 124.21 0.00018123 4734420000 2438058 1840828 1417598 1726311 1909141 3415445 2109448 2116994 1606746 2829986 TRUE FALSE FALSE 2267162.724 1694954.085 1966529.91 4018939.251 1669678.734 2994082.122 1581641.799 1635000.68 1746020.037 2121339.085 1.068741315 0.799001959 0.9270229 1.894529393 0.787087149 1.411411378 0.745586507 0.770739902 0.823074467 1 21.01654382 -6.786786472 24.99453543 0.815745081 1.139592085 0.193122591 0.312287442 391.7498694 386297.0335 0.131623339 0.088778458 1.63E-07 6.786786472 0.323847004 RDS(ph)PTYDPYK ddPTM_HeLa_A485_30min_R1 2 RDSPTYDPYK 10 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 RDS(0.891)PT(0.106)Y(0.003)DPYK;RDS(0.961)PT(0.039)YDPYK ; 74.987 0.006359 768410000 2065350 1799610 1391780 3150200 2528430 2072900 3102500 2858090 1938660 4101000 TRUE FALSE FALSE 2524779.982 2010058.735 1906657.339 3322287.449 2276690.631 2181433.839 2439625.53 2157138.946 2327731.28 3078696.173 0.820080917 0.652892855 0.619306756 1.07912157 0.739498315 0.708557687 0.792421659 0.700666394 0.756076972 1 21.55388807 -10.61590012 2.390970593 1.028741319 0.761715713 0.259076755 0.120123587 6104418.575 4878726.282 1090381.494 0.031808474 2.42E-11 10.61590012 -0.267025606 RDS(ph)PTYDPYK ddPTM_HeLa_A486_30min_R1 2 RDSPTYDPYK 10 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 RDS(0.977)PT(0.023)YDPYK;RDS(0.825)PT(0.161)Y(0.013)DPYK ; 96.734 0.0012965 857510000 2808610 2855680 1438550 1295470 2533640 3435600 3963600 3747600 2384830 4193600 TRUE FALSE FALSE 2611740.943 2629385.517 1995595.086 3015919.629 2215847.246 3011750.603 2971865.357 2894353.29 2591548.985 3143495.264 0.830839789 0.836452832 0.634833177 0.959415993 0.704899184 0.958089753 0.94540157 0.920743646 0.824416379 1 21.58393816 -6.278568708 24.84322445 0.92575621 0.796112492 0.364116214 0.090039259 881.8124391 1278917.459 0.030434562 0.026905518 5.27E-07 6.278568708 -0.129643718 RDS(ph)PTYDPYKR ddPTM_HeLa_A485_30min_R1 4 RDSPTYDPYKR 11 2 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 RDS(0.841)PT(0.159)YDPYKR;RDS(0.962)PT(0.038)YDPYKR;RDS(0.987)PT(0.013)YDPYKR;RDS(0.998)PT(0.002)YDPYKR ;;; 107.37 0.00029615 4111170000 1317860 1112690 903640 1788260 1358770 1129560 1687760 1490640 1082170 2167890 TRUE FALSE FALSE 1611013.41 1242809.416 1237934.04 1885948.116 1223486.088 1188702.015 1327156.288 1125058.203 1299351.593 1627474.92 0.989885245 0.763642746 0.760647076 1.158818543 0.75176955 0.730396518 0.815469579 0.691290655 0.798385018 1 20.63420388 RDS(ph)PTYDPYKR ddPTM_HeLa_A486_30min_R1 3 RDSPTYDPYKR 11 2 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 RDS(0.81)PT(0.19)YDPYKR;RDS(0.996)PT(0.004)YDPYKR;RDS(0.993)PT(0.007)Y(0.001)DPYKR ;; 83.499 0.006406 368730000 932330 949100 456890 323040 713990 972450 1018810 970090 713060 1250510 TRUE FALSE FALSE 866978.4816 873889.8594 633810.0439 752053.4455 624434.7165 852479.0061 763892.9621 749221.6839 774868.6149 937374.1565 0.924901199 0.932274325 0.676154809 0.802298037 0.666153117 0.909433016 0.81492855 0.799277086 0.826637485 1 19.83826549 -9.490417458 8.941443508 1 0.813432114 0.281341847 0.087636817 0 0 0.086603424 0.021004415 3.23E-10 9.490417458 -0.186567886 RDS(ph)QDGSSYR ddPTM_HeLa_A485_30min_R1 5 RDSQDGSSYR 10 1 Q14847;C9J9W2;Q14847-3;Q14847-2;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 RDS(1)QDGSSYR;RDS(1)QDGSSYR;RDS(0.823)QDGS(0.128)S(0.049)YR;RDS(0.78)QDGS(0.184)S(0.036)YR;RDS(1)QDGSSYR ;;;; 156.6 1.00E-06 7479720000 647823 683517 607673 788353 771545 610125 669137 600473 702552 970190 TRUE FALSE FALSE 791928.9914 763448.3673 832476.5301 831418.7282 694727.2707 642070.2016 526170.4136 453206.0552 843547.7422 728339.488 1.087307505 1.048204004 1.142978712 1.141526365 0.953850893 0.881553468 0.722424669 0.622245619 1.158179333 1 19.47425154 -6.007263289 2.735362968 0.843881883 1.103293244 0.358920073 0.139946847 0.273460142 4.131945494 0.048228433 0.05222954 9.83E-07 6.007263289 0.259411362 RDS(ph)QDGSSYR ddPTM_HeLa_A486_30min_R1 6 RDSQDGSSYR 10 1 Q14847;C9J9W2;Q14847-3;Q14847-2;J3KSN1 Q14847 LASP1 LIM and SH3 domain protein 1 1 0 RDS(1)QDGSSYR;RDS(1)QDGSSYR;RDS(0.951)QDGS(0.035)S(0.015)YR;RDS(0.659)QDGS(0.053)S(0.288)YR;RDS(1)QDGSSYR;RDS(1)QDGSSYR ;;;;; 173.59 9.64E-08 7928132000 513978 519211 455040 185569 507193 576089 543390 510579 488101 531727 TRUE FALSE FALSE 477950.7964 478066.8294 631243.6744 432014.0101 443576.1246 505016.9964 407428.0746 394331.3076 530409.9877 398579.0982 1.199136629 1.199427746 1.583735016 1.083885262 1.112893593 1.267043351 1.022201306 0.989342666 1.330752139 1 18.60450653 RDS(ph)RS(ph)S(ph)EREES(ph)QSR ddPTM_HeLa_A485_30min_R1 1 RDSRSSEREESQSR 14 3 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 4 0 RDS(0.999)RS(0.999)S(0.999)EREES(0.818)QS(0.186)R 50.883 0.01685 286560000 242630 248830 232850 434590 444100 258860 336330 434030 270010 488510 TRUE FALSE FALSE 296602.2064 277928.504 318990.9047 458330.5513 399883.8447 272413.5093 264470.3479 327583.462 324198.5303 366733.4474 0.808767808 0.757848803 0.869816776 1.249764794 1.090393711 0.742810647 0.721151424 0.893246755 0.884016805 1 18.48437233 -9.214177133 14.1567294 1 0.893484867 0.041793969 0.156311873 0 0 0.169255965 0.041050601 6.11E-10 9.214177133 -0.106515133 RDS(ph)RS(ph)S(ph)EREES(ph)QSR ddPTM_HeLa_A486_30min_R1 1 RDSRSSEREESQSR 14 3 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 4 0 RDS(1)RS(1)S(1)EREES(0.836)QS(0.165)R 48.315 0.018996 176590000 125210 155420 146270 136700 206260 209530 209970 209340 138580 204860 TRUE FALSE FALSE 116433.4256 143103.9532 202909.6612 318244.5084 180388.9475 183680.3189 157433.2852 161677.8519 150592.226 153561.7226 0.758219064 0.931898593 1.321355725 2.072420803 1.174699948 1.196133489 1.025211768 1.052852554 0.980662521 1 17.22845912 -6.622318592 2.49202113 1.014684245 1.27924598 0.106690767 0.321932792 0.732901728 9.245617968 0.157048385 0.114927568 2.39E-07 6.622318592 0.264561734 RDS(ph)RS(ph)S(ph)EREESQSR ddPTM_HeLa_A485_30min_R1 1 RDSRSSEREESQSR 14 3 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 3 0 RDS(0.994)RS(0.985)S(0.521)EREES(0.292)QS(0.208)R 65.374 0.017193 836790000 723470 837310 826260 1184100 1529000 927560 1104300 1452100 976280 1541800 TRUE FALSE FALSE 884403.4056 935226.1209 1131927.958 1248784.385 1376767.391 976125.6073 868357.2837 1095970.198 1172210.441 1157457.635 0.764091384 0.808000304 0.977943316 1.078902888 1.189475407 0.843335927 0.750228136 0.94687716 1.012745872 1 20.14252796 -4.711550647 4.680023118 0.972021226 0.777026571 0.31025451 0.113130884 0.271363865 12.44660489 0.033162657 0.090603394 1.94E-05 4.711550647 -0.194994655 RDS(ph)RS(ph)S(ph)EREESQSR ddPTM_HeLa_A486_30min_R1 1 RDSRSSEREESQSR 14 3 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 3 0 RDS(1)RS(1)S(1)EREESQSR 60.034 0.030339 558390000 249940 285480 299220 193980 399460 389520 360200 355950 299010 362260 TRUE FALSE FALSE 232420.4967 262857.5251 415085.9974 451595.2432 349356.002 341464.9827 270074.1502 274907.9553 324928.4276 271547.7381 0.855910266 0.967997476 1.528593095 1.663041815 1.286536225 1.257476807 0.994573374 1.012374315 1.196579393 1 18.05084632 -6.711294248 7.162409477 1.052132828 1.279431058 0.166391572 0.226826315 0.421568027 48.51572552 0.098508395 0.075424267 1.94E-07 6.711294248 0.22729823 RDS(ph)SDDWEIPDGQITVGQR ddPTM_HeLa_A485_30min_R1 3 RDSSDDWEIPDGQITVGQR 19 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 RDS(0.857)S(0.143)DDWEIPDGQITVGQR;RDS(0.839)S(0.161)DDWEIPDGQITVGQR;RDS(0.806)S(0.194)DDWEIPDGQITVGQR ;; 195.96 7.88E-19 864800000 350079 414867 388859 423557 575330 452755 566480 589260 440764 561770 TRUE FALSE FALSE 427952.8658 463382.0868 532714.1259 446694.8464 518048.1251 476460.5517 445446.9203 444743.0611 529221.2919 421731.0776 1.014752975 1.098762011 1.263160706 1.059193572 1.228384989 1.129773396 1.056234515 1.054565539 1.254878571 1 18.68596381 -6.547920339 23.49704869 1.095543474 1.138601878 0.042934089 0.091949969 428.3846701 401955.0352 0.034560097 0.026771609 2.83E-07 6.547920339 0.043058404 RDS(ph)SDDWEIPDGQITVGQR ddPTM_HeLa_A486_30min_R1 2 RDSSDDWEIPDGQITVGQR 19 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 RDS(0.794)S(0.206)DDWEIPDGQITVGQR;RDS(0.5)S(0.5)DDWEIPDGQITVGQR ; 196.41 9.25E-20 845880000 568960 642100 493490 204809 711210 578290 676020 674660 529490 692490 TRUE FALSE FALSE 529078.8421 591217.6575 684582.5441 476805.7025 622003.41 506946.4594 506872.6458 521054.6457 575386.6195 519085.9966 1.019250848 1.13895898 1.318822986 0.918548575 1.198266596 0.97661363 0.976471431 1.00379253 1.108461071 1 18.98561404 -5.90813454 1.327195136 1.016425051 1.134967739 0.149164345 0.107846075 0.778548478 2.864063168 0.044230729 0.054375751 1.24E-06 5.90813454 0.118542688 RDS(ph)SES(ph)QLASTESDKPTTGR ddPTM_HeLa_A486_30min_R1 2 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 2 0 RDS(0.543)S(0.46)ES(0.997)QLAS(0.001)TESDKPTTGR;RDS(0.977)S(0.061)ES(0.961)QLAS(0.001)TESDKPTTGR ; 104.83 0.00014248 1565390000 891120 951040 549610 478940 1026490 1074410 1425840 1257730 677390 1214020 TRUE FALSE FALSE 828657.0897 875676.1268 762433.7111 1114996.524 897738.0526 941860.218 1069079.751 971372.3351 736106.7106 910021.4901 0.910590683 0.962258734 0.837819457 1.225241971 0.986502036 1.034986787 1.17478517 1.067416919 0.808889371 1 19.79554109 -5.226863316 24.99939825 1.048214993 0.909426543 0.252330795 0.109193591 885.5792719 640296.1037 0.029421012 0.050956043 5.93E-06 5.226863316 -0.13878845 RDS(ph)SESQLASTESDKPTTGR ddPTM_HeLa_A485_30min_R1 4 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RDS(0.794)S(0.204)ES(0.002)QLASTESDKPTTGR;RDS(0.743)S(0.248)ES(0.001)QLAS(0.004)T(0.004)ESDKPTTGR;RDS(0.956)S(0.044)ESQLASTESDKPTTGR;RDS(0.857)S(0.049)ES(0.064)QLAS(0.023)T(0.005)ESDKPTTGR ;;; 232 2.48E-36 7184800000 1164424 1068898 781968 1521220 1486533 1244966 1652973 1662437 1039833 1787058 TRUE FALSE FALSE 1423446.102 1193896.323 1071250.504 1604320.397 1338528.555 1310150.495 1299801.815 1254721.719 1248517.945 1341577.329 1.061024267 0.889919871 0.79850075 1.195846383 0.997727471 0.976574713 0.968860897 0.935258589 0.93063435 1 20.35549878 RDS(ph)SESQLASTESDKPTTGR ddPTM_HeLa_A486_30min_R1 3 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RDS(0.618)S(0.38)ES(0.003)QLASTESDKPTTGR;RDS(0.993)S(0.007)ESQLASTESDKPTTGR;RDS(0.789)S(0.202)ES(0.009)QLASTESDKPTTGR ;; 277.79 1.18E-72 4602800000 1162220 1022280 560040 454392 1040410 1064380 1293480 1278810 801490 1300830 TRUE FALSE FALSE 1080754.38 941270.8097 776902.4864 1057847.54 909912.0764 933067.6174 969837.623 987652.8792 870963.7985 975093.701 1.108359513 0.965313189 0.796746493 1.084867576 0.933153476 0.956900467 0.994609669 1.012879971 0.893210363 1 19.89518133 RDS(ph)SSHEETGASHTLYGHGVCK ddPTM_HeLa_A485_30min_R1 2 RDSSSHEETGASHTLYGHGVCK 22 1 A0A0U1RQE0;O15409;A0A0U1RQM2;A0A0U1RQY3;A0A0U1RQR8;O15409-9;A8MUV4;O15409-4;O15409-2;O15409-6;Q0PRL4;Q8N6B5;O15409-7;A0A0U1RQE6 A0A0U1RQE0 FOXP2 Forkhead box protein P2 1 0 RDS(0.333)S(0.333)S(0.333)HEET(0.001)GASHTLYGHGVCK;RDS(0.333)S(0.333)S(0.333)HEETGASHTLYGHGVCK ; 275.92 3.75E-73 935230000 527850 684990 555270 376080 777480 498800 688750 748810 507080 568790 TRUE FALSE FALSE 645268.4114 765093.6219 760687.4797 396624.2981 700071.3613 524916.3967 541592.9359 565163.1734 608846.3048 427001.1208 1.511163273 1.791783639 1.781464831 0.928860087 1.639507081 1.229309178 1.268364202 1.323563677 1.425865824 1 18.70388033 -1 0.134790801 0.986146093 3.415768516 0.335466281 0.230955695 92.60598357 0.840166514 1.116584191 43.03910076 0.1 1 2.429622424 RDS(ph)SSHEETGASHTLYGHGVCK ddPTM_HeLa_A486_30min_R1 2 RDSSSHEETGASHTLYGHGVCK 22 1 A0A0U1RQE0;O15409;A0A0U1RQM2;A0A0U1RQY3;A0A0U1RQR8;O15409-9;A8MUV4;O15409-4;O15409-2;O15409-6;Q0PRL4;Q8N6B5;O15409-7;A0A0U1RQE6 A0A0U1RQE0 FOXP2 Forkhead box protein P2 1 0 RDS(0.394)S(0.394)S(0.212)HEETGASHTLYGHGVCK;RDS(0.323)S(0.323)S(0.323)HEET(0.032)GASHTLYGHGVCK ; 254.27 2.70E-59 1199740000 857750 836570 610760 66250 897040 669590 748020 759830 737150 448760 TRUE FALSE FALSE 797626.1544 770277.1465 847262.6287 154233.3481 784524.8786 586982.7937 560857.4843 586833.296 801046.7555 336387.5751 2.371152247 2.289850172 2.518709642 0.458498944 2.33220528 1.744959794 1.667295482 1.744515373 2.381320878 1 18.35976489 RDS(ph)SSHEETPGSHPLYGHGECK ddPTM_HeLa_A485_30min_R1 3 RDSSSHEETPGSHPLYGHGECK 22 1 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 0 RDS(0.451)S(0.451)S(0.097)HEETPGSHPLYGHGECK;RDS(0.687)S(0.157)S(0.157)HEETPGSHPLYGHGECK;RDS(0.333)S(0.333)S(0.333)HEET(0.002)PGSHPLYGHGECK ;; 257.92 2.11E-59 2387600000 1922650 1862202 1578370 1555202 2213643 1565945 2237263 1681218 1591133 2236348 TRUE FALSE FALSE 2350336.859 2079970.325 2162274.744 1640158.747 1993244.93 1647935.459 1759253.483 1268896.649 1910458.798 1678867.601 1.39995367 1.23891266 1.28793643 0.976943475 1.187255582 0.981575592 1.047881014 0.755805073 1.137944885 1 20.67905703 -4.710415504 0.551670131 0.960907444 1.547013283 0.586822518 0.113898115 1.738101684 0.569384551 0.06569109 0.615662313 1.95E-05 4.710415504 0.586105839 RDS(ph)SSHEETPGSHPLYGHGECK ddPTM_HeLa_A486_30min_R1 3 RDSSSHEETPGSHPLYGHGECK 22 1 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 0 RDS(0.863)S(0.11)S(0.028)HEETPGSHPLYGHGECK;RDS(0.572)S(0.147)S(0.282)HEETPGSHPLYGHGECK;RDS(0.607)S(0.196)S(0.196)HEET(0.002)PGSHPLYGHGECK ;; 262.7 1.34E-59 3410910000 2703080 2640120 1708140 231749 2536000 2366580 2489580 2490790 2377950 1931160 TRUE FALSE FALSE 2513608.051 2430907.276 2369577.554 539523.3839 2217911.233 2074615.421 1866660.752 1923691.491 2584072.621 1447584.966 1.736414863 1.679284693 1.636917769 0.372705849 1.532145805 1.433156236 1.289499957 1.328897119 1.785092192 1 20.4652166 -5.032261619 24.99928083 1.262223641 1.695413444 0.243480208 0.352505488 917.8738507 711252.9727 0.096153457 0.166728139 9.28E-06 5.032261619 0.433189803 RDS(ph)TEAPKPK ddPTM_HeLa_A485_30min_R1 3 RDSTEAPKPK 10 2 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 RDS(0.991)T(0.009)EAPKPK;RDS(0.994)T(0.006)EAPKPK;RDS(0.996)T(0.004)EAPKPK ;; 153.81 1.16E-06 548290000 761470 439240 261716 1389490 518620 429480 814050 658480 499750 1637660 TRUE FALSE FALSE 930856.3745 490605.2971 358535.6393 1465394.32 466984.3718 451966.9087 640121.5673 496986.7475 600045.241 1229421.501 0.757149907 0.39905378 0.29162955 1.191938094 0.379840739 0.367625675 0.520668922 0.404244392 0.488071211 1 20.22954819 -10.05366132 5.014834633 1.000006152 0.528107881 0.236911901 0.251086814 2.37E-05 4.47E-06 0.24207345 0.058710381 8.84E-11 10.05366132 -0.471898271 RDS(ph)TEAPKPK ddPTM_HeLa_A486_30min_R1 4 RDSTEAPKPK 10 2 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 RDS(0.972)T(0.028)EAPKPK;RDS(0.998)T(0.002)EAPKPK;RDS(0.991)T(0.009)EAPKPK;RDS(0.994)T(0.006)EAPKPK ;;; 156.08 8.35E-07 551578000 705956 496846 315910 355573 414013 961000 904739 702902 609295 1063200 TRUE FALSE FALSE 656472.13 457474.1135 438238.8124 827791.9137 362083.629 842441.5907 678363.7328 542866.5588 662109.1812 796967.7997 0.823712238 0.574018315 0.549882709 1.038676737 0.454326548 1.057058505 0.851180855 0.681164984 0.830785361 1 19.60416191 -5.659669647 1.065307923 0.841547569 0.665243499 0.121476284 0.190360157 1.203706746 2.874551251 0.0797365 0.136534116 2.19E-06 5.659669647 -0.17630407 RDS(ph)VLTSK ddPTM_HeLa_A485_30min_R1 1 RDSVLTSK 8 1 O75937 O75937 DNAJC8 DnaJ homolog subfamily C member 8 1 0 RDS(1)VLTSK 134.49 0.00029177 247760000 192120 220630 171650 262320 269640 233450 352730 327450 209630 333480 TRUE FALSE FALSE 234856.4312 246430.7593 235150.478 276649.8774 242793.6948 245673.081 277366.354 247142.3741 251700.8182 250349.5732 0.938113967 0.984346632 0.939288511 1.10505432 0.969818689 0.981320151 1.107916224 0.987189117 1.005397432 1 17.93358447 RDS(ph)VLTSK ddPTM_HeLa_A486_30min_R1 4 RDSVLTSK 8 1 O75937 O75937 DNAJC8 DnaJ homolog subfamily C member 8 1 0 RDS(1)VLTSK;RDS(1)VLTSK;RDS(1)VLTSK;RDS(1)VLTSK ;;; 117.86 0.00051165 389054000 1105610 1422200 988095 298198 1487750 1010910 1072080 1238160 750270 846590 TRUE FALSE FALSE 1028112.448 1309499.692 1370711.846 694220.0141 1301142.522 886194.2024 803834.2447 956257.9968 815304.0077 634598.3536 1.620099457 2.063509439 2.159967542 1.093951805 2.050340211 1.396464705 1.266681894 1.506871222 1.284755945 1 19.27548425 -6.532355397 0.307617463 0.98960692 2.066688477 0.431016342 0.299567883 1.946330386 0.443171687 0.425811171 0.752388833 2.94E-07 6.532355397 1.077081557 RDSAS(ph)YRDR ddPTM_HeLa_A485_30min_R1 1 RDSASYRDR 9 2 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 RDS(0.287)AS(0.713)YRDR 63.691 0.017154 170350000 75914 158830 125120 64732 174740 168670 200850 357620 109260 95372 TRUE FALSE FALSE 92800.8074 177403.7869 171407.0947 68268.14525 157342.2721 177501.3004 157936.7567 269913.1343 131187.4798 71597.51559 1.296145636 2.477792496 2.394036906 0.953498801 2.197594019 2.479154464 2.205897166 3.769867321 1.832290949 1 16.12762191 -5.991387187 24.98783996 2.417452478 1.836709016 0.060213623 0.776082837 450.9327606 1308253.823 0.235266699 0.266371181 1.02E-06 5.991387187 -0.580743462 RDSDS(ph)FLNIFPEK ddPTM_HeLa_A485_30min_R1 1 RDSDSFLNIFPEK 13 1 A0A0A6YYJ5;O94854-2;O94854 A0A0A6YYJ5 MACF1;KIAA0754 Uncharacterized protein KIAA0754 1 0 RDS(0.426)DS(0.574)FLNIFPEK 72.265 0.0057112 49610000 35788 26074 18387 34656 21576 27936 30918 29745 24321 59578 TRUE FALSE FALSE 43748.91713 29123.12749 25189.11645 36549.16953 19427.81768 29398.68576 24312.11672 22449.99211 29202.00161 44726.30105 0.978147446 0.65114098 0.563183538 0.817173982 0.434371214 0.657301969 0.543575394 0.501941622 0.652904464 1 15.44883583 -8.05708654 21.81740576 1.000000001 0.633190695 0.335974096 0.149477753 5397.702232 2062898.559 0.142515728 0.036797403 8.77E-09 8.05708654 -0.366809306 RDSFIGT(ph)PYWMAPEVVMCETMK ddPTM_HeLa_A485_30min_R1 1 RDSFIGTPYWMAPEVVMCETMK 22 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 RDS(0.267)FIGT(0.405)PY(0.328)WMAPEVVMCETMK 91.64 0.0012671 273660000 41333 23581 19543 54807 34771 36166 51993 46494 24275 71515 TRUE FALSE FALSE 50527.38325 26338.59282 26772.76895 57800.96763 31309.07715 38059.59584 40884.27081 35091.2736 29146.76984 53687.62664 0.941136467 0.490589629 0.498676709 1.076616182 0.583171191 0.708908146 0.761521292 0.653619387 0.54289548 1 15.71230201 -10.49727701 3.235446613 1.007231985 0.69248547 0.202677138 0.181267893 172874389.9 208440214.4 11108720.47 0.045655884 3.18E-11 10.49727701 -0.314746515 RDSHLTLLNQLLQGLR ddPTM_HeLa_A485_30min_R1 2 RDSHLTLLNQLLQGLR 16 1 E9PKV2;Q9NRX2 E9PKV2 MRPL17 "39S ribosomal protein L17, mitochondrial" 0 0 ; ; 110.38 0.00020239 34850000 19044 24828.6 22045.9 13031.3 23856.2 20765.1 27031.6 30016.7 17104.9 25112.9 FALSE FALSE TRUE 23280.2721 27732.08879 30201.59582 13743.16692 21480.99296 21852.32853 21256.07783 22655.05726 20537.69653 18852.7162 1.234849761 1.470986382 1.601975837 0.728975431 1.13941104 1.159107701 1.127480921 1.201686644 1.089375999 1 14.20248477 -5.240812222 24.99887168 1.081908281 1.43944223 0.560506268 0.150428318 635.5555758 770254.1248 0.041148421 0.071167137 5.74E-06 5.240812222 0.357533948 RDSHLTLLNQLLQGLR ddPTM_HeLa_A486_30min_R1 2 RDSHLTLLNQLLQGLR 16 1 E9PKV2;Q9NRX2 E9PKV2 MRPL17 "39S ribosomal protein L17, mitochondrial" 0 0 ; ; 92.063 0.0013087 19174000 13230.1 10267.9 7151.1 5094.4 10399.9 8018.4 8850.5 9737.8 6749 9561.8 FALSE FALSE TRUE 12302.73831 9454.234209 9920.197433 11860.02066 9095.447567 7029.171333 6636.011289 7520.715515 7334.008754 7167.463043 1.716470421 1.319048895 1.384059795 1.654702729 1.268991205 0.980705626 0.925852181 1.049285566 1.023236354 1 12.80724685 -6.060031634 3.498444435 0.996419448 1.494423808 0.821879677 0.114273391 0.102258025 2.479253786 0.038952792 0.040522615 8.71E-07 6.060031634 0.49800436 RDSS(ph)DDWEIPDGQITVGQR ddPTM_HeLa_A486_30min_R1 2 RDSSDDWEIPDGQITVGQR 19 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 RDS(0.384)S(0.616)DDWEIPDGQITVGQR;RDS(0.382)S(0.618)DDWEIPDGQITVGQR ; 214.02 9.51E-27 1979760000 935300 1110210 891360 358650 1208710 1058990 1123410 1257660 922060 1140460 TRUE FALSE FALSE 869740.2999 1022232.916 1236518.463 834955.3252 1057102.321 928342.5808 842320.9358 971318.2725 1001984.903 854881.3929 1.01738125 1.195759932 1.446421075 0.976691424 1.23654852 1.085931439 0.985307369 1.136202379 1.17207476 1 19.70536475 -5.968227598 1.421437012 1.082220054 1.193874883 0.100989537 0.131840552 0.970424998 4.046026415 0.054699049 0.063057199 1.08E-06 5.968227598 0.111654829 RDSS(ph)ESQLASTESDKPTTGR ddPTM_HeLa_A485_30min_R1 2 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RDS(0.303)S(0.696)ES(0.001)QLASTESDKPTTGR;RDS(0.203)S(0.352)ES(0.352)QLAS(0.087)T(0.005)ES(0.002)DKPTTGR ; 237.1 3.26E-46 3173100000 348160 320200 240056 501450 414700 386520 513820 560880 298220 553360 TRUE FALSE FALSE 425606.9909 357644.6046 328862.704 528842.9438 373411.0119 406757.5895 404038.1595 423323.3006 358070.0186 415417.5358 1.024528226 0.860928039 0.791643769 1.273039528 0.898881197 0.979153633 0.972607376 1.019030888 0.861952103 1 18.66420259 RDSS(ph)ESQLASTESDKPTTGR ddPTM_HeLa_A486_30min_R1 1 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RDS(0.233)S(0.478)ES(0.233)QLAS(0.028)T(0.028)ESDKPTTGR 234.53 3.80E-46 2009900000 354490 304530 138390 122610 286010 335120 387310 328320 247220 424800 TRUE FALSE FALSE 329642.0816 280397.9337 191978.3142 285442.2764 250135.9589 293776.3017 290400.9415 253568.7032 268649.2287 318427.315 1.035219235 0.880571234 0.602895245 0.89641266 0.785535496 0.922585117 0.911985021 0.796315803 0.8436752 1 18.28060457 -6.266590792 24.83348559 0.883249012 0.832321154 0.048620794 0.112940657 1591.017853 7669814.44 0.040342244 0.036666353 5.41E-07 6.266590792 -0.050927858 RDSS(ph)SHEETPGSHPLYGHGECK ddPTM_HeLa_A485_30min_R1 2 RDSSSHEETPGSHPLYGHGECK 22 1 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 0 RDS(0.293)S(0.563)S(0.144)HEETPGSHPLYGHGECK;RDS(0.235)S(0.378)S(0.378)HEET(0.01)PGSHPLYGHGECK ; 253.9 2.76E-59 2854100000 879670 852620 746400 725700 1119090 783240 1119700 829420 792340 1093130 TRUE FALSE FALSE 1075349.557 952326.4922 1022524.42 765343.1534 1007669.47 824249.2353 880466.9479 626003.4445 951355.3702 820632.8086 1.310390647 1.160478209 1.246019425 0.932625585 1.227917602 1.004406876 1.072912195 0.762830145 1.159294827 1 19.64637731 -3.957027243 0.387620531 0.972085881 1.614856154 0.370968162 0.125195661 7.59475149 0.75550909 0.100136147 2.384705927 0.000110401 3.957027243 0.642770272 RDTS(ph)GLER ddPTM_HeLa_A485_30min_R1 1 RDTSGLER 8 1 Q9H307 Q9H307 PNN Pinin 1 0 RDT(0.049)S(0.951)GLER 67.385 0.011048 456360000 58035 87594 95201 66075 101360 76837 100190 115690 99138 102080 TRUE FALSE FALSE 70944.68553 97837.35633 130419.8115 69684.50994 91268.2425 80860.06651 78783.58802 87316.84611 119034.0873 76633.33464 0.925767955 1.276694493 1.70186789 0.909323733 1.190973131 1.055155265 1.028058982 1.13941076 1.553293848 1 16.22568446 -4.251891449 23.48530466 1.205910125 0.925767607 0.111944207 0.236859833 1328.936797 3268659.252 0.05952325 0.70703648 5.60E-05 4.251891449 -0.280142518 RDTS(ph)GLER ddPTM_HeLa_A486_30min_R1 1 RDTSGLER 8 1 Q9H307 Q9H307 PNN Pinin 1 0 RDT(0.113)S(0.887)GLER 56.225 0.024708 410700000 82156 101480 99472 36218 116530 101940 104250 118600 106070 89685 TRUE FALSE FALSE 76397.28865 93438.35522 137990.2224 84317.33436 101913.7208 89363.67925 78165.54736 91597.36902 115264.233 67227.29225 1.136402882 1.389887233 2.052592299 1.254212858 1.515957543 1.32927679 1.162705573 1.362502727 1.714545226 1 16.03675942 -6.269926594 21.20210025 1.327018612 1.485769488 0.068962506 0.281504775 251.6418672 628623.8685 0.099539213 0.089589104 5.37E-07 6.269926594 0.158750876 RDVLSLLNLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RDVLSLLNLSPR 12 1 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 RDVLS(0.007)LLNLS(0.993)PR;RDVLSLLNLS(1)PR ; 207.79 1.46E-17 113220000 68961 95576 85982 70365 101304 84484 108463 117877 77681 95312 TRUE FALSE FALSE 84301.13654 106752.7818 117790.3198 74208.86178 91217.81806 88907.4516 85288.99399 88967.48093 93270.86417 71552.47249 1.178172236 1.491950985 1.646208939 1.037125052 1.2748381 1.242548979 1.191978293 1.243387934 1.303530974 1 16.126714 -13.52535995 0.062339414 1.07E-07 1.734065918 0.258421691 0.157437498 476.9243062 2.35134228 75.15556456 13.36344887 2.98E-14 13.52535995 1.734065811 RDVLSLLNLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RDVLSLLNLSPR 12 1 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 RDVLSLLNLS(1)PR;RDVLSLLNLS(1)PR ; 170.23 8.61E-11 238135000 148231 157989 133485 65585 177499 133474 158060 163988 131761 162378 TRUE FALSE FALSE 137840.7724 145469.3763 185173.9669 152685.1945 155235.4203 117007.3349 118511.7162 126651.5122 143182.1496 121717.4919 1.132464777 1.195139449 1.521342282 1.254422779 1.275374787 0.961302547 0.973662161 1.040536658 1.176348176 1 16.89317699 -6.250041235 23.61959996 1.029359219 1.283729858 0.559109243 0.108832115 276.9554677 573915.7504 0.038020672 0.037654796 5.62E-07 6.250041235 0.254370639 RDVYLS(ph)PR ddPTM_HeLa_A485_30min_R1 5 RDVYLSPR 8 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR ;;;; 123.67 0.00037175 5355500000 1602240 2239220 2144420 1554530 2476080 1959940 2341140 2433380 1979820 2137250 TRUE FALSE FALSE 1958652.76 2501077.3 2937730.195 1639450.038 2229552.781 2062559.428 1840936.314 1836589.74 2377151.714 1604472.908 1.220745299 1.558815539 1.830962791 1.021799763 1.389585807 1.285505924 1.147377624 1.144668589 1.48157797 1 20.613668 -5.271606945 24.99797809 1.224111881 1.539038655 0.364975829 0.196905289 746.2129939 1834637.722 0.054567551 0.081995049 5.35E-06 5.271606945 0.314926774 RDVYLS(ph)PR ddPTM_HeLa_A486_30min_R1 5 RDVYLSPR 8 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR ;;;; 140.78 0.00024528 3692660000 2761690 2907020 2409462 876792 3012550 2416260 2793710 2849710 2429610 2620090 TRUE FALSE FALSE 2568109.792 2676657.148 3342470.214 2041216.087 2634687.888 2118166.408 2094694.209 2200893.242 2640210.551 1964002.41 1.307589939 1.362858383 1.701866656 1.039314451 1.341489132 1.078494811 1.066543604 1.120616365 1.344301075 1 20.90536527 -5.27970305 24.99963522 1.149142589 1.447980365 0.49462793 0.146092692 681.7391507 933174.9658 0.040635778 0.060402787 5.25E-06 5.27970305 0.298837776 RDYDDMS(ph)PR ddPTM_HeLa_A485_30min_R1 16 RDYDDMSPR 9 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDY(0.001)DDMS(0.999)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR ;;;;;;;;;;;;;;; 196.27 1.50E-09 54519499000 19804431 26432786 27120189 22615728 35239676 25951350 30688787 35549295 24795856 27802628 TRUE FALSE FALSE 24209858.35 29523870.39 37153075.48 23851167.95 31731090.12 27310122.56 24131876.95 26830774.66 29772156.86 20871944.51 1.159923472 1.414524189 1.780048594 1.142738184 1.520274745 1.308460865 1.15618729 1.28549473 1.426419893 1 24.31506168 -6.515384744 23.03663632 1.239603428 1.41092873 0.1633812 0.196092636 252.6721159 776729.4932 0.071918767 0.058258639 3.05E-07 6.515384744 0.171325303 RDYDDMS(ph)PR ddPTM_HeLa_A486_30min_R1 10 RDYDDMSPR 9 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR ;;;;;;;;; 182.29 8.76E-08 52984350000 27243710 33959520 29193310 11353679 39866380 31072100 36523470 38338300 27480260 31893580 TRUE FALSE FALSE 25334066.62 31268443.96 40497741.46 26431938.5 34865966.88 27238740.22 27384911.5 29609506.01 29862271.06 23907219.98 1.059682667 1.307907987 1.693954441 1.105604856 1.458386501 1.139352055 1.145466162 1.23851732 1.24909007 1 24.51094304 -6.285895948 24.04127331 1.168828746 1.332448721 0.185326539 0.177263829 900.2113958 884921.0213 0.062141786 0.054833824 5.18E-07 6.285895948 0.163619974 RDYS(ph)YER ddPTM_HeLa_A485_30min_R1 3 RDYSYER 7 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 RDYS(1)YER;RDYS(1)YER;RDYS(1)YER ;; 140.49 0.00088997 1116440000 336790 401360 429580 360390 480970 390090 456980 515610 411020 442950 TRUE FALSE FALSE 411707.7736 448295.5606 588499.5183 380077.1931 433082.938 410514.5092 359342.4898 389155.8391 493507.9439 332530.7169 1.23810449 1.348132783 1.76975987 1.142983712 1.30238476 1.234516056 1.080629462 1.170285388 1.484097314 1 18.34312809 RDYS(ph)YER ddPTM_HeLa_A486_30min_R1 2 RDYSYER 7 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 RDYS(1)YER;RDYS(1)YER ; 152.04 0.00047075 1415060000 605690 625230 564930 228820 745790 511810 626650 625590 541580 556120 TRUE FALSE FALSE 563234.2588 575684.4978 783686.0254 532704.5239 652246.064 448668.0859 469855.542 483156.8135 588524.5905 416863.9323 1.351122549 1.380988983 1.879956419 1.277885858 1.56464979 1.076293848 1.12711968 1.159027625 1.411790623 1 18.66921703 -6.259687389 24.99399221 1.16305266 1.494591232 0.459881289 0.181976847 151.3117967 2158632.597 0.061267582 0.05825917 5.50E-07 6.259687389 0.331538572 REAEALLQSMGLTPESPIVPPPMS(ph)PSSK ddPTM_HeLa_A486_30min_R1 1 REAEALLQSMGLTPESPIVPPPMSPSSK 28 1 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 REAEALLQSMGLT(0.001)PES(0.003)PIVPPPMS(0.736)PS(0.13)S(0.13)K 58.925 0.01318 68331000 49242 45541 27067 18130 41450 44808 53618 48540 37090 60820 TRUE FALSE FALSE 45790.39009 41932.1653 37548.06728 42207.55624 36250.95449 39280.04453 40202.20929 37488.50162 40304.99106 45590.27613 1.0043894 0.919761161 0.823598154 0.925801724 0.795146632 0.861588213 0.881815437 0.822291611 0.884069905 1 15.47643853 -4.404678708 3.148581131 0.866741011 1.007385002 0.327934329 0.055733183 0.281423045 4.586262418 0.013132582 0.079051827 3.94E-05 4.404678708 0.140643991 REDFQDISVPVQEDELSKVEESSEIS(ph)PEPK ddPTM_HeLa_A485_30min_R1 1 REDFQDISVPVQEDELSKVEESSEISPEPK 30 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 REDFQDISVPVQEDELSKVEESSEIS(1)PEPK 299.49 7.57E-93 303850000 104440 71161 63216 243830 146410 127270 244370 241200 79531 362990 TRUE FALSE FALSE 127672.3177 79482.65993 86602.22904 257149.8155 131832.9063 133933.6604 192158.3532 182045.3218 95492.1422 272503.2733 0.468516639 0.291675982 0.317802528 0.943657712 0.483784671 0.491493767 0.705159798 0.668048202 0.35042567 1 18.05591403 -14 0.124362113 2.413316599 0.333728704 0.351378595 0.191525013 179.1155841 1.425247249 64.66387372 1.722333254 1.00E-14 14 -2.079587896 REDFQDISVPVQEDELSKVEESSEIS(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 REDFQDISVPVQEDELSKVEESSEISPEPK 30 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 REDFQDISVPVQEDELSKVEES(0.001)S(0.001)EIS(0.999)PEPK;REDFQDISVPVQEDELSKVEES(0.003)S(0.011)EIS(0.986)PEPK ; 139.96 1.63E-07 831700000 150629 157992 71937 177110 171224 258976 392595 344214 147760 421178 TRUE FALSE FALSE 140070.6849 145472.1385 99792.93294 412321.0306 149747.4893 227026.1742 294363.5786 265843.9863 160567.9558 315712.2874 0.443665611 0.460774396 0.316088214 1.306002481 0.474316317 0.719091981 0.932379227 0.842045105 0.508589504 1 18.26825089 REDIFYTSK ddPTM_HeLa_A485_30min_R1 6 REDIFYTSK 9 1 P52895;B4DK69;S4R3P0;P52895-2;Q04828;H0Y804;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ;;;;; ;;;;; 185.96 6.02E-08 2434822000 2204014 2569321 2337979 2472714 2981230 3105820 3800710 4173180 2370255 3387190 FALSE FALSE TRUE 2694289.311 2869780.741 3202894.724 2607792.105 2684408.273 3268435.933 2988657.26 3149701.062 2845943.437 2542825.87 1.059565007 1.12857934 1.259580832 1.025548834 1.055679158 1.285355781 1.175329107 1.238661719 1.119205004 1 21.27800124 -6.228341367 24.99589533 1.179352943 1.111142707 0.075503415 0.09271261 1491.283212 1126229.483 0.030246388 0.030243668 5.91E-07 6.228341367 -0.068210236 REDIFYTSK ddPTM_HeLa_A486_30min_R1 4 REDIFYTSK 9 1 P52895;B4DK69;S4R3P0;P52895-2;Q04828;H0Y804;A6NHU4;P17516;A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C4;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C3 0 0 ;;; ;;; 163.9 2.71E-05 2426030000 2244250 2495360 1819540 964450 3379730 2600890 2882460 2886390 2391070 3234680 FALSE FALSE TRUE 2086939.664 2297618.586 2524114.617 2245288.341 2955812.749 2280018.636 2161238.02 2229222.006 2598329.873 2424695.074 0.860701903 0.947590734 1.041002906 0.926008538 1.219045141 0.94033211 0.891344253 0.919382412 1.071610984 1 21.2093719 -4.387363975 3.13519604 0.99729035 0.856004715 0.182470467 0.090838108 0.525287058 8.354575745 0.023919624 0.151311651 4.10E-05 4.387363975 -0.141285635 REDQEGS(ph)PPETSLPYK ddPTM_HeLa_A485_30min_R1 1 REDQEGSPPETSLPYK 16 1 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 REDQEGS(0.999)PPETSLPYK 62.617 0.008361 0 88432 103430 78943 114970 100750 95135 125750 135050 88887 157280 TRUE FALSE FALSE 108103.3933 115525.2388 108147.3008 121250.52 90718.97625 100116.1215 98882.48522 101928.7757 106725.8056 118072.9905 0.915564117 0.978422231 0.915935984 1.026911569 0.768329623 0.847917217 0.837469135 0.863269197 0.903896862 1 16.84931946 -5.753105283 24.99937751 0.860565079 0.957489978 0.319929263 0.062665691 199.8457737 599464.6479 0.017735358 0.022505397 1.77E-06 5.753105283 0.0969249 REDS(ph)FESLDSLGSR ddPTM_HeLa_A485_30min_R1 2 REDSFESLDSLGSR 14 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 REDS(1)FESLDSLGSR;REDS(1)FESLDSLGSR ; 236.95 2.05E-35 317430000 167370 196209 238900 187048 268300 200889 251350 244230 195952 221220 TRUE FALSE FALSE 204600.8791 219153.9358 327279.0515 197265.9586 241587.1099 211407.2374 197647.0192 184332.2096 235277.769 166073.9253 1.231986772 1.319616764 1.970682941 1.187820173 1.454696212 1.272970679 1.190114697 1.109940704 1.416705053 1 17.34146605 -6.300979134 1.432642818 1.183255509 1.461451902 0.222463884 0.223336174 0.657027918 2.708261081 0.104968699 0.091942564 5.00E-07 6.300979134 0.278196393 REDS(ph)FESLDSLGSR ddPTM_HeLa_A486_30min_R1 2 REDSFESLDSLGSR 14 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 REDS(1)FESLDSLGSR;REDS(1)FESLDSLGSR ; 251.74 9.39E-37 447750000 193006 237120 211438 74099 269770 206990 242140 262150 201460 215560 TRUE FALSE FALSE 179477.2761 218329.7476 293312.4561 172506.2168 235932.9311 181453.6783 181554.0109 202464.1677 218922.715 161582.3729 1.110747867 1.351197805 1.815250332 1.067605418 1.460140279 1.122979413 1.123600351 1.253009001 1.354867558 1 17.3019103 -6.267116894 24.93282206 1.183748643 1.369382148 0.168346076 0.209876156 913.0976386 4009855.924 0.07322285 0.066319602 5.41E-07 6.267116894 0.185633506 REDS(ph)MEDR ddPTM_HeLa_A485_30min_R1 3 REDSMEDR 8 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 REDS(1)MEDR;REDS(1)MEDR;REDS(1)MEDR ;; 149.93 0.00014156 937075000 440069 683510 390266 346609 269605 418792 370125 378806 351402 346084 TRUE FALSE FALSE 537960.8308 763440.5488 534641.6337 365543.372 242762.1796 440719.3015 291044.7701 285903.2346 421925.1581 259811.628 2.07058027 2.938438724 2.057804871 1.406955396 0.934377654 1.696303221 1.120214566 1.100425092 1.623965645 1 17.98710648 -5.155506003 2.993004609 1.262797969 2.505689464 0.731356859 0.30891011 0.121575505 2.088593846 0.082692053 0.159237681 6.99E-06 5.155506003 1.242891496 REDS(ph)MEDR ddPTM_HeLa_A486_30min_R1 2 REDSMEDR 8 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;Q9UQ88-9;A0A087WYI9;A0A087X1I0;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 REDS(1)MEDR;REDS(1)MEDR ; 118.77 0.00048757 544710000 752910 562440 431980 149729 334770 524140 451120 368060 569410 729320 TRUE FALSE FALSE 700134.897 517870.206 599254.2248 348576.6789 292780.025 459476.9359 338245.0045 284260.7727 618766.9173 546693.5249 1.280671647 0.947277007 1.096142898 0.63760894 0.535546905 0.840465297 0.618710464 0.519963672 1.131835094 1 19.06037276 -5.253349375 24.25787694 0.723628226 1.091955221 0.38367993 0.202111164 394.6283601 1183288.006 0.053174595 0.089977886 5.58E-06 5.253349375 0.368326995 REDS(ph)MEDRGEEDDSLAIKPPQQMSR ddPTM_HeLa_A485_30min_R1 5 REDSMEDRGEEDDSLAIKPPQQMSR 25 3 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;Q9UQ88-9;A0A087WYI9;A0A087X1I0;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR ;;;; 219.21 2.85E-37 3698560000 579032 562555 568416.3 879220 933993 785023 1134787 1099806 762405 1220945 TRUE FALSE FALSE 707835.6708 628340.9137 778697.1431 927249.5623 841001.3775 826125.5904 892330.4871 830076.8541 915412.6903 916585.8813 0.772252426 0.68552323 0.849562664 1.011634132 0.91753691 0.901307349 0.973537238 0.905618198 0.998720042 1 19.80591054 -4.979787389 4.306806063 0.950420738 0.73177673 0.818093383 0.043242528 0.074469917 3.300929978 0.011140446 0.023390028 1.05E-05 4.979787389 -0.218644008 REDS(ph)MEDRGEEDDSLAIKPPQQMSR ddPTM_HeLa_A486_30min_R1 4 REDSMEDRGEEDDSLAIKPPQQMSR 25 3 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;Q9UQ88-9;A0A087WYI9;A0A087X1I0;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2;E9PFJ2 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR;REDS(1)MEDRGEEDDSLAIKPPQQMSR ;;; 177.03 4.72E-14 3987650000 1061770 1240110 800330 540440 1360510 1413870 1681100 1645160 983720 1498870 TRUE FALSE FALSE 987345.406 1141839.167 1110239.21 1258171.632 1189862.15 1239441.095 1260470.999 1270592.982 1068989.642 1123543.196 0.878778323 1.016284172 0.988158901 1.119824887 1.059026617 1.103153932 1.121871419 1.130880402 0.951445076 1 20.09962416 -3.942718677 0.980528026 1.076405935 0.665298424 0.468964174 0.058423094 2.759238948 1.400746902 0.018603141 1.384622879 0.000114099 3.942718677 -0.41110751 REDS(ph)PGPEVQPMDK ddPTM_HeLa_A485_30min_R1 3 REDSPGPEVQPMDK 14 1 O75382-3;O75382-2;O75382;E9PMW5;E9PMK8 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK ;; 185.63 1.70E-15 1517560000 1231481 1613770 1530050 1264620 1977410 1601840 1882590 1799740 1452970 1714110 TRUE FALSE FALSE 1505419.7 1802486.364 2096079.166 1333702.988 1780532.117 1685709.865 1480359.267 1358350.943 1744567.752 1286813.923 1.16988142 1.400735826 1.628890649 1.036438109 1.383674893 1.309987276 1.150406629 1.055592358 1.355726512 1 20.29537202 -7.562453136 0.301720106 0.985147926 1.391760012 0.229815209 0.16678088 2.257778025 0.738752389 0.341757903 0.288494598 2.74E-08 7.562453136 0.406612086 REDS(ph)PGPEVQPMDK ddPTM_HeLa_A486_30min_R1 5 REDSPGPEVQPMDK 14 1 O75382-3;O75382-2;O75382;E9PMW5;E9PMK8 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK ;;;; 252.47 4.01E-42 1297450000 1848940 2051100 1618586 618033 2362020 1940180 2225910 2306020 1627920 2019910 TRUE FALSE FALSE 1719338.854 1888563.366 2245345.846 1438812.058 2065753.427 1700820.318 1668963.775 1780989.586 1769029.416 1514111.389 1.135543175 1.247308078 1.482946277 0.950268302 1.364333854 1.123312545 1.102272783 1.17626061 1.168361476 1 20.53003991 -8.937765951 0.192738651 0.892166256 1.286631516 0.184821572 0.135911322 16.26521893 1.207398367 1.686171422 0.529749954 1.15E-09 8.937765951 0.39446526 REDS(ph)PGPEVQPMDKQFLVCSICLDR ddPTM_HeLa_A485_30min_R1 2 REDSPGPEVQPMDKQFLVCSICLDR 25 2 O75382-3;O75382-2;O75382;E9PMW5;E9PMK8 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 REDS(1)PGPEVQPMDKQFLVCSICLDR;REDS(1)PGPEVQPMDKQFLVCSICLDR ; 122.09 1.37E-05 242990000 34676 115351 56814 28507 124462 146795 172009 343970 72626 53878 TRUE FALSE FALSE 42389.55657 128840.296 77831.86283 30064.26523 112070.1263 154480.9592 135257.872 259610.8182 87201.37203 40447.20615 1.048021869 3.185394204 1.924282793 0.743296462 2.770775461 3.819323358 3.344059697 6.41851052 2.155930665 1 15.30375243 -6.009682221 5.338573131 3.656362837 1.827236536 0.204674771 1.439278871 0.240011092 21.92151438 0.453509077 0.484113025 9.78E-07 6.009682221 -1.8291263 REDS(ph)YHVR ddPTM_HeLa_A485_30min_R1 2 REDSYHVR 8 1 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 REDS(1)YHVR;REDS(1)YHVR ; 163.9 2.10E-05 1706210000 508900 699300 643430 559050 821710 632060 652180 786340 586710 716890 TRUE FALSE FALSE 622103.0493 781077.0519 881461.5324 589589.4859 739897.6672 665153.6842 512836.4152 593488.8821 704457.3154 538182.5164 1.15593322 1.45132372 1.637848695 1.095519583 1.374808071 1.23592585 0.952904265 1.102765073 1.308956151 1 19.037736 -6.531227095 6.176709678 1.097969294 1.347934549 0.341350583 0.164727046 0.185293295 29.27586407 0.063415042 0.050764539 2.94E-07 6.531227095 0.249965255 REDS(ph)YHVR ddPTM_HeLa_A486_30min_R1 1 REDSYHVR 8 1 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 REDS(1)YHVR 132.62 0.00030557 647310000 361810 402140 338410 109210 400610 317310 369490 404550 321310 372040 TRUE FALSE FALSE 336448.9874 370272.9618 469451.4149 254246.3992 350361.7583 278163.5184 277039.6939 312442.7963 349161.4095 278878.7624 1.206434597 1.327720184 1.683353049 0.911673578 1.256322838 0.997435287 0.993405491 1.120353495 1.252018642 1 18.08927855 -5.274715003 24.99561279 1.081714384 1.39802439 0.493148679 0.153146675 649.6076446 1223093.104 0.042895152 0.064030606 5.31E-06 5.274715003 0.316310006 REDSFES(ph)LDSLGSR ddPTM_HeLa_A485_30min_R1 1 REDSFESLDSLGSR 14 1 E9PMS6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 REDS(0.043)FES(0.955)LDS(0.002)LGSR 217.69 3.43E-27 265030000 167420 242760 268330 200340 286380 230530 243930 275870 228760 249370 TRUE FALSE FALSE 204662.0014 271148.6703 367596.4331 211284.0669 257867.0017 242600.1943 191812.3628 208212.45 274670.0337 187206.6483 1.093241096 1.448392313 1.963586424 1.128614121 1.377445748 1.295895186 1.024602302 1.112206494 1.467202347 1 17.51427215 -5.9136586 1.47529683 1.175725029 1.469051493 0.174498247 0.25191888 0.690864149 3.111172898 0.101795439 0.122409356 1.22E-06 5.9136586 0.293326464 REEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_A485_30min_R1 12 REEDEENDNDNESDHDEADS 20 1 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(0.5)DHDEADS(0.5);REEDEENDNDNES(0.992)DHDEADS(0.008);REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(0.916)DHDEADS(0.084) ;;;;;;;;;;; 333.01 2.48E-114 46752631000 1662869 1989345 2056117.3 1840008.3 2497839.3 1939104.6 2383303.7 2361490.7 1982670.5 2541209.8 TRUE FALSE FALSE 2032768.472 2221981.593 2816760.651 1940523.294 2249145.649 2040633.118 1874091.395 1782331.403 2380574.283 1907732.964 1.06554141 1.164723593 1.476496294 1.017188113 1.178962513 1.069663919 0.982365682 0.934266712 1.247855086 1 20.86342781 -5.907095543 1.506997074 1.039617155 1.213321234 0.195321996 0.13675851 0.613024988 2.878065553 0.053851981 0.064926414 1.24E-06 5.907095543 0.173704079 REEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_A486_30min_R1 9 REEDEENDNDNESDHDEADS 20 1 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS;REEDEENDNDNES(1)DHDEADS ;;;;;;;; 267.81 1.71E-59 45290704000 2065891 2504209 2172406 838215.1 2982178 2392686 2594899 2690027 2183502 2459632 TRUE FALSE FALSE 1921082.709 2305766.359 3013619.782 1951407.114 2608125.428 2097500.728 1945627.824 2077566.575 2372769.711 1843724.138 1.04195778 1.250602686 1.634528572 1.058405145 1.414596346 1.137643471 1.055270571 1.126831576 1.286943997 1 20.81419138 -6.406002815 8.960137496 1.12344105 1.285598345 0.174798617 0.172405058 0.615810297 43.63494402 0.060417625 0.053222179 3.93E-07 6.406002815 0.162157295 REEDEPEERS(ph)GDETPGSEVPGDK ddPTM_HeLa_A485_30min_R1 3 REEDEPEERSGDETPGSEVPGDK 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 REEDEPEERS(0.962)GDET(0.029)PGS(0.009)EVPGDK;REEDEPEERS(0.979)GDET(0.002)PGS(0.019)EVPGDK;REEDEPEERS(0.974)GDET(0.013)PGS(0.013)EVPGDK ;; 233.44 1.39E-39 6048800000 2205165 1594107 2061971 4530621 4164333 2597527 4152816 3298938 2733709 6542334 TRUE FALSE FALSE 2695696.347 1780523.947 2824779.879 4778117.353 3749717.385 2733529.497 3265532.936 2489868.283 3282339.321 4911450.537 0.548859512 0.362525069 0.575141673 0.972852586 0.763464349 0.556562563 0.664881568 0.506951717 0.668303447 1 22.22771774 -11.70540716 1.545150202 5.609834813 0.62532279 0.346516066 0.154738156 1420475.223 53208.25613 22899029.88 0.04509557 1.97E-12 11.70540716 -4.984512023 REEDEPEERS(ph)GDETPGSEVPGDK ddPTM_HeLa_A486_30min_R1 1 REEDEPEERSGDETPGSEVPGDK 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 REEDEPEERS(0.965)GDET(0.011)PGS(0.024)EVPGDK 156.08 3.74E-10 4086500000 1075200 1160600 930080 694450 1749300 1629500 2002500 2110200 1265100 1567700 TRUE FALSE FALSE 999834.0323 1068629.829 1290231.884 1616714.696 1529886.482 1428468.858 1501453.32 1629753.525 1374759.887 1175137.716 0.85082286 0.909365613 1.097941005 1.375766154 1.301878462 1.215575705 1.277682862 1.38686173 1.169871299 1 20.16439841 -4.898062416 2.854092911 1.264833629 0.869074556 0.649118866 0.106462895 0.13957925 2.265137661 0.027601417 0.069910164 1.26E-05 4.898062416 -0.395759073 REEDEPEERS(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_A485_30min_R1 1 REEDEPEERSGDETPGSEVPGDKAAEEQGDDQDSEK 36 3 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 REEDEPEERS(0.806)GDET(0.193)PGSEVPGDKAAEEQGDDQDSEK 193.05 1.59E-21 1122800000 49020 32373 61830 188440 176590 103260 288060 313330 116860 300690 TRUE FALSE FALSE 59924.32988 36158.74074 84703.48996 198734 159008.0796 108666.5339 226513.6278 236485.3262 140312.7301 225733.5168 0.26546492 0.160183305 0.375236656 0.880392079 0.704406159 0.481392996 1.003455893 1.047630541 0.621585718 1 17.78426112 -5.13586638 3.64467572 0.810834125 0.220408551 0.686401329 0.17296095 0.142614579 3.398422256 0.050295183 0.094011797 7.31E-06 5.13586638 -0.590425574 REEDEPEERS(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_A486_30min_R1 1 REEDEPEERSGDETPGSEVPGDKAAEEQGDDQDSEK 36 3 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 REEDEPEERS(0.695)GDET(0.278)PGS(0.027)EVPGDKAAEEQGDDQDSEK 73.773 0.00070182 1178900000 38494 30394 26022 91098 104480 98752 156230 152170 35066 102120 TRUE FALSE FALSE 35795.76938 27985.46875 36098.41529 212080.7478 91375.14416 86568.98228 117139.6016 117524.2128 38105.54911 76548.48731 0.467622165 0.365591401 0.471575815 2.77054133 1.193689743 1.130903893 1.530266707 1.53529112 0.497796239 1 16.22408625 -5.049405336 24.99847318 1.407990045 0.417096322 0.383310068 0.548681945 350.2989311 177246.3255 0.14680467 0.254278925 8.92E-06 5.049405336 -0.990893723 REEGDPS(ph)PHSGGVCKPK ddPTM_HeLa_A485_30min_R1 2 REEGDPSPHSGGVCKPK 17 2 O75376-2;O75376;E7EVK1;J3KRE4 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 REEGDPS(1)PHSGGVCKPK;REEGDPS(1)PHSGGVCKPK ; 106.49 8.98E-05 653173000 660590 529280 399823 787660 825270 729760 949000 1033340 555280 1116260 TRUE FALSE FALSE 807535.9665 591174.6919 547734.1657 830687.8713 743103.2211 767969.1052 746238.3974 779911.7448 666719.6027 837996.9252 0.963650274 0.705461648 0.653623121 0.991277947 0.886761274 0.916434276 0.890502548 0.930685688 0.795611037 1 19.67658542 -5.269638652 24.99902808 0.910758419 0.767366675 0.331222744 0.091879783 674.986128 2057986.527 0.025340112 0.03830998 5.37E-06 5.269638652 -0.143391743 REEGDPS(ph)PHSGGVCKPK ddPTM_HeLa_A486_30min_R1 3 REEGDPSPHSGGVCKPK 17 2 O75376-2;O75376;E7EVK1;J3KRE4 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 REEGDPS(1)PHSGGVCKPK;REEGDPS(1)PHSGGVCKPK;REEGDPS(1)PHSGGVCKPK ;; 100.92 0.00017536 1020780000 1159580 1076540 517980 494840 1071120 1197090 1440320 1416490 862010 1428910 TRUE FALSE FALSE 1078299.43 991231.0497 718555.728 1152012.528 936770.1418 1049405.207 1079936.702 1093986.149 936729.7209 1071101.635 1.006719992 0.925431366 0.670856718 1.075539883 0.87458567 0.979743819 1.008248579 1.021365399 0.874547933 1 20.03066395 REEGPPPPSPDGASS(ph)DAEPEPPSGR ddPTM_HeLa_A485_30min_R1 1 REEGPPPPSPDGASSDAEPEPPSGR 25 1 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 REEGPPPPS(0.001)PDGAS(0.199)S(0.799)DAEPEPPSGR 74.973 0.0049348 871380000 102730 173030 181720 74878 141380 127650 88284 140150 142300 74027 TRUE FALSE FALSE 125581.9341 193264.3533 248945.79 78968.39554 127303.7108 134333.5566 69421.40219 105777.9928 170858.3047 55573.43127 2.259747711 3.477639385 4.479582857 1.420973903 2.290729723 2.417226246 1.249183299 1.903391429 3.074460239 1 15.7621077 -5.274810691 24.87456015 1.955351038 3.412854994 0.449484121 0.758261396 655.2789391 1219009.659 0.21251263 0.317287027 5.31E-06 5.274810691 1.457503955 REEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_A485_30min_R1 1 REEGSDIEDEDMEELLNDTR 20 1 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 REEGS(1)DIEDEDMEELLNDTR 115.88 9.17E-06 100060000 0 3544.9 0 4161 6067.6 3610.1 6936.7 0 5778.8 0 TRUE FALSE FALSE 0 3959.445218 0 4388.304894 5463.488439 3799.119254 5454.617377 0 6938.552154 0 0 REEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_A486_30min_R1 1 REEGSDIEDEDMEELLNDTR 20 1 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 REEGS(1)DIEDEDMEELLNDTR 200.74 1.75E-26 107440000 44039 45051 33688 13933 52404 39559 41261 48601 36695 52861 TRUE FALSE FALSE 40952.09352 41480.99469 46732.8958 32436.72813 45831.00167 34678.61279 30937.06139 37535.61325 39875.75215 39624.26153 1.03351058 1.046858492 1.179401054 0.818607764 1.156639894 0.875186349 0.780760579 0.947288651 1.006346885 1 15.27409643 -6.286164359 24.87328591 0.909799781 1.041662276 0.243582352 0.108972771 1041.105512 1047346.5 0.038041441 0.033564013 5.17E-07 6.286164359 0.131862495 REEMK(ac)EVAK(ac)K ddPTM_HeLa_A486_30min_R1 1 REEMKEVAKK 10 3 Q9BV00;P29536-2;P29536 Q9BV00 LMOD1 Leiomodin-1 0 2 REEMK(1)EVAK(1)K 73.233 0.03211 70656000 198610 108530 61992 9273.5 102190 103170 147000 172180 109840 154840 FALSE TRUE FALSE 184688.4646 99929.68754 85996.9626 21589.17666 89372.37732 90441.93436 110219.0452 132978.3727 119361.0196 116067.0562 1.591222098 0.860965125 0.740924819 0.186006067 0.770006411 0.779221403 0.949615238 1.145702985 1.028379831 1 16.82459902 -6.93163325 3.525395161 1.06454423 0.788471966 0.094018688 0.320659805 0.545618653 13.63200118 0.158023306 0.099407362 1.17E-07 6.93163325 -0.276072264 REEQT(ph)DT(ph)SDGESVTHHIR ddPTM_HeLa_A485_30min_R1 1 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 REEQT(1)DT(0.562)S(0.438)DGESVTHHIR 149.62 1.23E-08 3128700000 606310 945650 813220 468760 1068800 853250 882300 947470 730800 697690 TRUE FALSE FALSE 741181.5678 1056235.541 1114063.919 494367.1718 962386.5192 897924.8506 693789.3973 715101.4969 877464.8567 523768.723 1.415093218 2.016606748 2.127014978 0.943865393 1.837426476 1.714353704 1.324610208 1.365300113 1.675290673 1 18.99857039 -11.23940561 0.121719712 2.78E-10 1.987980873 0.25212613 0.32911845 89.90691107 1.448402103 29.14932054 3.802658652 5.76E-12 11.23940561 1.987980872 REEQT(ph)DT(ph)SDGESVTHHIR ddPTM_HeLa_A486_30min_R1 1 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 REEQT(1)DT(0.566)S(0.434)DGESVTHHIR 160.36 2.12E-12 2953600000 806090 964680 981580 116010 1363500 773690 874970 844550 794080 511550 TRUE FALSE FALSE 749587.2537 888235.2435 1361674.064 270077.1428 1192477.116 678239.9941 656043.2515 652264.4014 862911.4938 383454.5504 1.954826857 2.316402929 3.551070296 0.704326347 3.109826483 1.768762409 1.710876167 1.701021414 2.250361856 1 18.54869606 -9.898185102 0.164395524 1.78E-10 2.635249591 0.191325299 0.736470549 37.66387909 1.381968473 21.18977643 3.852985444 1.26E-10 9.898185102 2.63524959 REEQT(ph)DTS(ph)DGESVTHHIR ddPTM_HeLa_A485_30min_R1 1 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 REEQT(0.998)DT(0.039)S(0.832)DGES(0.12)VT(0.011)HHIR 100.14 0.00025657 803150000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 REEQT(ph)DTS(ph)DGESVTHHIR ddPTM_HeLa_A486_30min_R1 1 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 2 0 REEQT(0.961)DT(0.214)S(0.489)DGES(0.258)VT(0.078)HHIR 84.127 0.001223 1018600000 487680 606360 673220 128470 858100 520790 635730 698850 481070 412250 TRUE FALSE FALSE 453496.1504 558309.8253 933908.8135 299084.6525 750469.0965 456540.2248 476663.6299 539737.1108 522769.5349 309019.9167 1.467530492 1.806711461 3.022163825 0.967849114 2.428546045 1.477381231 1.542501322 1.746609463 1.691701753 1 18.2373403 -9.390117505 0.265841384 0.646009441 1.985332251 0.183948614 0.530193351 15.26276222 1.359810052 5.607323884 0.818042815 4.07E-10 9.390117505 1.33932281 REEQTDT(ph)SDGESVTHHIR ddPTM_HeLa_A485_30min_R1 4 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 REEQT(0.001)DT(0.894)S(0.105)DGESVTHHIR;REEQT(0.001)DT(0.5)S(0.5)DGESVTHHIR;REEQT(0.002)DT(0.499)S(0.499)DGESVTHHIR;REEQT(0.142)DT(0.429)S(0.429)DGESVTHHIR ;;; 209.24 1.23E-25 11987550000 1649453 2967870 2904470 1266069 3369820 2516730 2462790 3123420 2754770 2378348 TRUE FALSE FALSE 2016368.129 3314936.579 3978954.318 1335231.144 3034308.889 2648502.091 1936594.797 2357396.348 3307627.071 1785469.614 1.129320888 1.856618871 2.228519762 0.747831906 1.699445829 1.483364416 1.0846417 1.32032286 1.852524986 1 20.76787215 -5.251582653 24.98496308 1.339673734 1.749999662 0.19272692 0.396202188 1191.296663 3019708.756 0.106326295 0.181313062 5.60E-06 5.251582653 0.410325928 REEQTDT(ph)SDGESVTHHIR ddPTM_HeLa_A486_30min_R1 2 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 REEQT(0.115)DT(0.443)S(0.443)DGESVTHHIR;REEQT(0.015)DT(0.492)S(0.492)DGESVTHHIR ; 167.59 3.04E-12 1013060000 360290 381910 304680 56465 445540 300160 304650 324380 333670 246514 TRUE FALSE FALSE 335035.5315 351646.0607 422660.2556 131453.3736 389656.2187 263129.311 228423.3477 250525.7552 362592.7843 184785.2899 1.813107157 1.902998128 2.287304665 0.711384406 2.108697175 1.423973257 1.236155475 1.355766768 1.962238361 1 17.49549039 -1 0.094443857 0.816973051 3.97503979 0.18851179 0.438390687 243.9404137 1.649660492 6.781328871 99.74934147 0.1 1 3.158066739 REEQTDTS(ph)DGESVTHHIR ddPTM_HeLa_A486_30min_R1 3 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 REEQT(0.023)DT(0.36)S(0.617)DGESVTHHIR;REEQTDT(0.19)S(0.81)DGESVTHHIR;REEQTDT(0.096)S(0.904)DGESVTHHIR ;; 248.45 4.94E-46 9076000000 2127490 2428220 2519080 266137 3309770 2008990 2348450 2314970 2358940 1683180 TRUE FALSE FALSE 1978363.937 2235799.004 3494535.239 619580.3858 2894627.784 1761141.24 1760842.971 1787901.866 2563414.819 1261700.772 1.568013574 1.772051704 2.769702069 0.491067612 2.294226847 1.395847001 1.395610599 1.417056964 2.031713759 1 20.26693837 -11.67499984 0.14747271 3.18E-12 1.930322985 0.103490261 0.581516542 141.876988 2.424926946 52.16204295 3.455018646 2.11E-12 11.67499984 1.930322985 REESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEK ddPTM_HeLa_A485_30min_R1 1 REESPMDVDQPSPSAQDTQSIASDGTPQGEK 31 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 REESPMDVDQPS(0.996)PS(0.004)AQDTQSIASDGTPQGEK 214.04 3.03E-30 1331100000 267160 249640 201610 346770 287930 255790 343580 305120 228890 421580 TRUE FALSE FALSE 326588.8203 278833.2264 276193.9287 365713.167 259262.6782 269182.7689 270171.3262 230288.8416 274826.1235 316487.8646 1.031915776 0.881023438 0.872684104 1.155536145 0.819186791 0.850531091 0.853654615 0.727638773 0.868362279 1 18.27179066 REESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEK ddPTM_HeLa_A486_30min_R1 2 REESPMDVDQPSPSAQDTQSIASDGTPQGEK 31 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 REESPMDVDQPS(0.999)PS(0.001)AQDTQSIASDGTPQGEK;REESPMDVDQPS(0.965)PS(0.035)AQDTQSIASDGTPQGEK ; 386.15 2.52E-193 2862600000 2165690 2138600 1246220 784970 1836180 2161210 2324270 2358440 1800390 2673750 TRUE FALSE FALSE 2013886.315 1969129.547 1728789.759 1827449.83 1605869.183 1894581.884 1742713.062 1821474.696 1956449.255 2004225.597 1.004820175 0.982488973 0.862572438 0.911798469 0.801241729 0.945293727 0.869519412 0.908817201 0.976162193 1 20.93461348 -9.763706219 10.27081638 1.000022505 0.91381985 0.143184823 0.059300466 0 0 0.058993239 0.014307962 1.72E-10 9.763706219 -0.086202655 REESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEKEK ddPTM_HeLa_A485_30min_R1 1 REESPMDVDQPSPSAQDTQSIASDGTPQGEKEK 33 2 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 REES(0.001)PMDVDQPS(0.846)PS(0.122)AQDT(0.026)QS(0.006)IASDGTPQGEKEK 76.358 0.00039375 748140000 55971 45003 52960 87008 72833 85320 124150 157680 67199 122250 TRUE FALSE FALSE 68421.55585 50265.70938 72552.10785 91761.02672 65581.49079 89787.22327 97624.33829 119008.7328 80685.22291 91775.32484 0.745533246 0.547703966 0.790540464 0.999844205 0.7145874 0.978337297 1.063731874 1.296739979 0.879160309 1 16.4858187 -5.692622145 0.687706473 1.085115421 0.632239416 0.505099096 0.141584835 0.6715482 0.66710566 0.088758345 0.177928033 2.03E-06 5.692622145 -0.452876004 REFDRHS(ph)GSDR ddPTM_HeLa_A486_30min_R1 1 REFDRHSGSDR 11 2 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 REFDRHS(0.915)GS(0.085)DR 85.28 0.0016856 20873000 19621 22712 21638 5601.7 26908 22284 21153 25277 17452 18284 TRUE FALSE FALSE 18245.66922 20912.2184 30016.81309 13041.04069 23532.94773 19534.82665 15860.29567 19521.97889 18964.75341 13705.56739 1.331259677 1.525819239 2.190118237 0.951514105 1.717035644 1.425320535 1.157215547 1.424383124 1.383726253 1 13.74247443 -8.310764416 0.234324735 0.864969538 1.653439877 0.204168287 0.304595775 6.575281396 0.998101353 1.694957058 0.802171754 4.89E-09 8.310764416 0.788470339 REFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_A485_30min_R1 2 REFITGDVEPTDAESEWHSENEEEEK 26 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPTDAESEWHS(1)ENEEEEK;REFITGDVEPTDAESEWHS(1)ENEEEEK ; 311.26 6.55E-106 1674880000 329820 317720 208359 357180 255650 289840 412330 367590 216895 473610 TRUE FALSE FALSE 403187.3211 354874.5902 285439.6646 376691.839 230196.5884 305015.5742 324232.3271 277437.9761 260423.837 355547.7431 1.133989257 0.998106716 0.802816697 1.059469076 0.647442131 0.857875152 0.911923457 0.780311453 0.732458135 1 18.43968377 -3.668644305 0.812732395 0.830660494 1.716571727 0.372829668 0.116600215 5.82217603 1.503941904 0.040743352 5.814113088 0.000214465 3.668644305 0.885911233 REFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_A486_30min_R1 2 REFITGDVEPTDAESEWHSENEEEEK 26 1 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPTDAESEWHS(1)ENEEEEK;REFITGDVEPTDAESEWHS(1)ENEEEEK ; 357.56 6.90E-143 1619930000 492110 463030 215430 86634 292470 458610 485470 472180 349510 742210 TRUE FALSE FALSE 457615.6303 426337.8165 298850.2654 201688.3302 255785.6854 402031.361 364000.2712 364674.9216 379805.8082 556355.785 0.822523361 0.766304275 0.53715675 0.36251682 0.459752001 0.722615585 0.654258086 0.65547071 0.682667132 1 19.08564824 -8.670344574 0.746909212 1.0063845 0.603689958 0.426431882 0.131413306 2.655759632 2.098611953 0.187293338 0.053062227 2.14E-09 8.670344574 -0.402694542 REFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_HeLa_A485_30min_R1 2 REFITGDVEPTDAESEWHSENEEEEKLAGDMK 32 2 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;REFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK ; 290.17 8.65E-93 729270000 200860 152377 134222 297969 259801 226229 392501 417831 164396 444753 TRUE FALSE FALSE 245540.614 170196.1646 183876.3032 314246.292 233934.3002 238074.0006 308639.9549 315357.2921 197388.7693 333884.2622 0.735406372 0.509745993 0.550718689 0.941183301 0.700644884 0.713043493 0.924392042 0.944510802 0.591189198 1 18.34898857 -5.248915422 24.97234258 0.821978434 0.589735897 0.383763698 0.134312011 790.7459919 1576717.867 0.035777895 0.061420047 5.64E-06 5.248915422 -0.232242536 REFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_HeLa_A486_30min_R1 3 REFITGDVEPTDAESEWHSENEEEEKLAGDMK 32 2 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK;REFITGDVEPTDAES(0.02)EWHS(0.98)ENEEEEKLAGDMK;REFITGDVEPTDAESEWHS(1)ENEEEEKLAGDMK ;; 297.33 5.17E-93 2494970000 493884 465965 225310 191387 559748 695970 995860 922970 458271 969270 TRUE FALSE FALSE 459265.282 429040.2364 312556.066 445558.6082 489539.1864 610108.2975 746685.2949 712829.8793 497994.2993 726558.4831 0.63211055 0.590510257 0.430187071 0.613245346 0.673778089 0.83972359 1.027701571 0.981104613 0.685415298 1 19.4707194 -6.164895696 2.029473072 0.923075597 0.55819894 0.720746285 0.101827736 0.178108133 1.444344143 0.040178477 0.039413195 6.84E-07 6.164895696 -0.364876657 REGPGS(ph)EPDSQVDGGLSGASLGEK ddPTM_HeLa_A485_30min_R1 1 REGPGSEPDSQVDGGLSGASLGEK 24 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 REGPGS(1)EPDSQVDGGLSGASLGEK 164.14 3.29E-14 197530000 121610 96493 84679 129590 155210 127910 174820 157650 104780 193700 TRUE FALSE FALSE 148661.725 107777.017 116005.2859 136669.1736 139756.7474 134607.1698 137468.2789 118986.0903 125808.3849 145414.1548 1.022333247 0.741172805 0.797757867 0.939861554 0.961094521 0.925681341 0.945356929 0.818256589 0.865172892 1 17.14980818 -5.2723377 24.40682178 0.91736087 0.842496454 0.12141816 0.082009567 1008.768283 2259138.34 0.023180334 0.034772126 5.34E-06 5.2723377 -0.074864416 REGPGS(ph)EPDSQVDGGLSGASLGEK ddPTM_HeLa_A486_30min_R1 1 REGPGSEPDSQVDGGLSGASLGEK 24 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 REGPGS(0.998)EPDS(0.002)QVDGGLSGASLGEK 215.01 2.89E-30 402980000 152890 166870 109430 70551 186710 181960 219590 220900 141740 215690 TRUE FALSE FALSE 142173.2005 153646.6135 151804.2266 164246.2935 163291.0908 159511.6252 164646.2594 170605.8922 154026.1373 161679.8201 0.879350314 0.950314105 0.938918825 1.015873801 1.009965812 0.986589576 1.018347616 1.055208325 0.952661484 1 17.3027801 -4.410482575 0.876034626 1.009512323 0.833394679 0.662868757 0.027964782 1.072363474 0.75629924 0.009940722 0.174068797 3.89E-05 4.410482575 -0.176117645 REGPVGGES(ph)DSEEMFEK ddPTM_HeLa_A485_30min_R1 3 REGPVGGESDSEEMFEK 17 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 REGPVGGES(0.612)DS(0.388)EEMFEK;REGPVGGES(0.97)DS(0.03)EEMFEK;REGPVGGES(0.816)DS(0.184)EEMFEK ;; 226.67 1.26E-34 1156970000 1008800 1032990 760780 1171190 1390410 1084940 1538870 1703010 992060 1494140 TRUE FALSE FALSE 1233204.08 1153789.195 1042224.181 1235169.144 1251975.898 1141745.781 1210077.853 1285344.127 1191157.342 1121678.396 1.099427505 1.028627456 0.929164888 1.101179401 1.116162978 1.017890498 1.078809985 1.145911459 1.06194195 1 20.09722766 REGPVGGES(ph)DSEEMFEK ddPTM_HeLa_A486_30min_R1 4 REGPVGGESDSEEMFEK 17 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 REGPVGGES(0.993)DS(0.007)EEMFEK;REGPVGGES(0.991)DS(0.009)EEMFEK;REGPVGGES(1)DSEEMFEK;REGPVGGES(0.809)DS(0.191)EEMFEK ;;; 299.34 8.48E-69 1366130000 1478050 1622210 965960 741656 1660790 1674960 2014900 2084170 1209230 1852230 TRUE FALSE FALSE 1374446.328 1493660.172 1340005.581 1726612.649 1452478.232 1468320.465 1510750.709 1609649.988 1314047.03 1388419.552 0.989935878 1.07579886 0.965130158 1.243581342 1.046137841 1.057548104 1.088108206 1.159339758 0.946433683 1 20.40501216 REGT(ph)PPPPPPSR ddPTM_HeLa_A485_30min_R1 4 REGTPPPPPPSR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 REGT(1)PPPPPPSR;REGT(1)PPPPPPSR;REGT(1)PPPPPPSR;REGT(1)PPPPPPSR ;;; 75.463 0.0077598 3491760000 1014136 1332879 1413885 1077134 1639780 1391989 1451091 1668560 1316593 1457150 TRUE FALSE FALSE 1239727.054 1488747.605 1936939.898 1135975.103 1476517.746 1464871.392 1141053.554 1259343.044 1580821.139 1093909.322 1.133299653 1.360942424 1.770658554 1.038454541 1.349762468 1.339115923 1.04309702 1.151231659 1.445111681 1 20.06106172 -6.022712103 1.125708975 1.186081235 1.376210162 0.106491735 0.21368988 1.141825946 3.058014891 0.102758672 0.116456107 9.49E-07 6.022712103 0.190128926 REGT(ph)PPPPPPSR ddPTM_HeLa_A486_30min_R1 1 REGTPPPPPPSR 12 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 REGT(1)PPPPPPSR 60.489 0.025171 865990000 129570 148790 132380 47533 188100 137190 151150 167450 129700 132200 TRUE FALSE FALSE 120487.8121 136999.3385 183641.0813 110659.2262 164506.744 120264.8926 113330.6713 129325.2904 140942.5004 99096.25952 1.215866398 1.382487484 1.853158557 1.116684189 1.660070166 1.213616873 1.143642271 1.305047143 1.422278713 1 16.59654298 -6.314727556 24.90867541 1.231402634 1.44650755 0.212624167 0.219197178 539.0326306 251960.1719 0.075370614 0.066470661 4.84E-07 6.314727556 0.215104916 REHS(ph)AFGDRPEKR ddPTM_HeLa_A485_30min_R1 2 REHSAFGDRPEKR 13 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 REHS(1)AFGDRPEKR;REHS(1)AFGDRPEKR ; 118.23 0.00013535 260930000 444060 515330 472650 429820 626140 488350 639980 796220 452720 571730 TRUE FALSE FALSE 542839.615 575593.3607 647502.9036 453299.9782 563799.3031 513919.2509 503243.0448 600945.7966 543576.7514 429208.2329 1.264746511 1.341058527 1.508598517 1.056130669 1.313579889 1.197365781 1.172491593 1.400126443 1.266463944 1 18.71131822 -11.09207323 2.218450176 0.550313453 1.28091286 0.334439216 0.11851992 10731920.41 2621601.975 24400892.79 0.029484515 8.09E-12 11.09207323 0.730599407 REHS(ph)AFGDRPEKR ddPTM_HeLa_A486_30min_R1 2 REHSAFGDRPEKR 13 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 REHS(1)AFGDRPEKR;REHS(1)AFGDRPEKR ; 108.18 0.00035297 213046000 446900 420930 365960 195076 524050 447490 492670 489740 302440 478400 TRUE FALSE FALSE 415574.6178 387573.9738 507669.5127 454146.7866 458318.7624 392283.2335 369398.7551 378236.8929 328655.7427 358605.5261 1.158862838 1.080780818 1.415676769 1.266424395 1.278058281 1.093912963 1.030097776 1.054743626 0.916482649 1 18.45203819 -6.499714848 2.55597258 1.002802141 1.242400936 0.62514746 0.087625463 0.208674434 2.729658469 0.038596313 0.03071628 3.16E-07 6.499714848 0.239598795 REPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_A485_30min_R1 2 REPESPPASAPIPLFGADTIGQR 23 1 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 REPES(0.992)PPAS(0.008)APIPLFGADTIGQR;REPES(0.999)PPAS(0.001)APIPLFGADTIGQR ; 185.38 4.32E-21 385170000 106480 131940 144980 135690 144650 105970 138240 113520 118580 152070 TRUE FALSE FALSE 130166.1086 147369.2353 198614.1351 143102.4011 130248.1381 111518.4253 108703.8947 85679.04201 142377.9183 114161.7476 1.140190224 1.290881038 1.739760815 1.253505698 1.140908761 0.976845814 0.952191929 0.750505697 1.247159589 1 16.8007198 -5.872102796 2.271845379 0.970137754 1.388839578 0.482688061 0.181841784 0.251601162 2.652121248 0.063734106 0.075737364 1.34E-06 5.872102796 0.418701824 REPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_A486_30min_R1 3 REPESPPASAPIPLFGADTIGQR 23 1 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 REPES(0.802)PPAS(0.198)APIPLFGADTIGQR;REPES(1)PPASAPIPLFGADTIGQR;REPES(0.999)PPAS(0.001)APIPLFGADTIGQR ;; 170.18 9.39E-15 563982000 265276 344118 262880 79908.8 313286 261684 254192 276664 285589 283804 TRUE FALSE FALSE 246681.5223 316848.8364 364674.1762 186031.7248 273990.7486 229400.0887 190590.473 213673.6467 310344.0845 212737.6311 1.159557531 1.489387819 1.714196845 0.874465527 1.287927985 1.078323978 0.895894497 1.004399859 1.458811414 1 17.69871573 -5.265636571 24.99935106 1.086084007 1.457881438 0.398704902 0.207473278 355.7516364 2118932.607 0.057937355 0.089490362 5.42E-06 5.265636571 0.371797431 REPLPSR ddPTM_HeLa_A485_30min_R1 1 REPLPSR 7 1 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5;Q8IZ40;Q96E39 P38159;Q96E39 RBMX;RCOR2;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;REST corepressor 2;RNA binding motif protein, X-linked-like-1" 0 0 121.09 0.0047756 45010000 29147 35310 36893 45474 41450 29517 34768 29812 40811 56636 FALSE FALSE TRUE 35630.64959 39439.19734 50541.25595 47958.12947 37323.09246 31062.46448 27339.53277 22500.56026 49001.39336 42517.68751 0.838019462 0.927595071 1.188711308 1.127957146 0.877825081 0.730577468 0.643015516 0.529204705 1.15249432 1 15.37577551 -5.9753816 5.287820834 0.773688287 1.025265182 0.203534076 0.188553526 0.246676272 19.36892494 0.060971079 0.067687957 1.06E-06 5.9753816 0.251576895 REPPS(ph)PQGR ddPTM_HeLa_A485_30min_R1 3 REPPSPQGR 9 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 REPPS(1)PQGR;REPPS(1)PQGR;REPPS(1)PQGR ;; 84.169 0.0031726 197070000 182950.4 188611 142463 209681.9 164755 229353 239579 268922 155654.4 210537 TRUE FALSE FALSE 223647.0853 210667.4158 195165.9921 221136.2913 148351.4137 241361.5684 188390.9895 202968.4578 186892.8103 158054.0005 1.415004268 1.332882528 1.234805771 1.399118595 0.938612203 1.527082944 1.191940658 1.284171594 1.182461752 1 17.27005803 -14 0.132679763 0.060421326 1.388907388 0.280186237 0.147414194 192.9453445 1.600505665 48.02846644 1.016129305 1.00E-14 14 1.328486062 REPPS(ph)PQGR ddPTM_HeLa_A486_30min_R1 3 REPPSPQGR 9 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 REPPS(1)PQGR;REPPS(1)PQGR;REPPS(1)PQGR ;; 79.089 0.0044866 321530000 90311 104050 97571 28423.6 120668 88750 98541 101946 82228 91799 TRUE FALSE FALSE 83980.66527 95804.69906 135353.1042 66171.57725 105532.6943 77800.92734 73884.99954 78735.12127 89355.58925 68811.93289 1.220437528 1.392268681 1.967000469 0.961629393 1.533639441 1.130631332 1.073723647 1.144207377 1.298547875 1 16.07037115 -6.003962909 1.245631625 1.133260189 1.462149846 0.222690237 0.251734639 0.691798532 2.239582738 0.11075095 0.125792592 9.91E-07 6.003962909 0.328889657 REPYGHLGPAELLEAS(ph)PAAR ddPTM_HeLa_A485_30min_R1 2 REPYGHLGPAELLEASPAAR 20 1 Q9H6W3 Q9H6W3 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 1 0 REPYGHLGPAELLEAS(1)PAAR;REPYGHLGPAELLEAS(1)PAAR ; 153.17 8.08E-10 310840000 83555 113888 114958 89483 140069 109689 128078 135152 99267 112247 TRUE FALSE FALSE 102141.5215 127206.2109 157485.748 94371.22971 126123.2385 115432.1464 100713.089 102005.7601 119188.9764 84265.88865 1.212133677 1.509581314 1.868914581 1.119922085 1.496729466 1.369856157 1.195182186 1.21052257 1.414439203 1 16.36266112 -8.100864384 0.268859305 0.93308326 1.521873659 0.270591621 0.201677077 3.54240087 0.770071319 0.732436283 0.39973481 7.93E-09 8.100864384 0.588790399 REQGGSGLGSGS(ph)SGGGGSTSGLGSGYIGR ddPTM_HeLa_A485_30min_R1 1 REQGGSGLGSGSSGGGGSTSGLGSGYIGR 29 1 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 REQGGSGLGS(0.002)GS(0.584)S(0.414)GGGGSTSGLGSGYIGR 153.6 8.59E-10 214720000 43878 62621 68409 50107 68391 76377 87676 79239 49693 77677 TRUE FALSE FALSE 53638.50972 69943.98122 93716.33584 52844.21853 61581.7519 80375.98162 68943.30635 59805.51101 59665.92929 58313.55344 0.919829209 1.199446391 1.607110703 0.90620817 1.056045263 1.378341344 1.182286146 1.025585091 1.02319145 1 15.83154362 -7.264264184 6.095533273 1.017050906 1.188578218 0.125345181 0.195236632 0.3335445 58.83325985 0.104613121 0.053945872 5.44E-08 7.264264184 0.171527312 REQGGSGLGSGSS(ph)GGGGSTSGLGSGYIGR ddPTM_HeLa_A485_30min_R1 1 REQGGSGLGSGSSGGGGSTSGLGSGYIGR 29 1 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 REQGGSGLGS(0.006)GS(0.092)S(0.902)GGGGSTSGLGSGYIGR 100.82 0.00037833 164030000 55357 66577 63685 58885 84222 64505 82595 104390 63932 86484 TRUE FALSE FALSE 67670.97367 74362.60101 87244.73165 62101.73845 75836.56196 67882.38206 64947.90351 78788.18882 76762.56598 64925.13042 1.042292456 1.145359286 1.343774454 0.95651311 1.168061758 1.045548644 1.000350759 1.213523767 1.182324402 1 15.98648939 -5.277930156 24.99664367 1.088602191 1.173963824 0.144370579 0.106129219 1797.219392 2724214.73 0.030306415 0.045089259 5.27E-06 5.277930156 0.085361633 REQGGSGLGSGSS(ph)GGGGSTSGLGSGYIGR ddPTM_HeLa_A486_30min_R1 1 REQGGSGLGSGSSGGGGSTSGLGSGYIGR 29 1 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 REQGGSGLGSGS(0.08)S(0.919)GGGGSTSGLGSGYIGR 128.86 2.56E-06 152810000 58804 71215 43649 19869 80336 63356 78867 77968 56282 74861 TRUE FALSE FALSE 54682.14326 65571.66404 60551.06176 46256.03612 70259.50978 55539.78088 59133.64243 60216.38843 61160.56908 56115.31834 0.974460181 1.168516298 1.079046926 0.824303194 1.2520558 0.989743666 1.053787882 1.073082898 1.089908618 1 15.77610703 -5.032607645 24.96108548 1.043102585 1.084561881 0.016710825 0.108910126 2772.091184 2122026.703 0.028562087 0.049517607 9.28E-06 5.032607645 0.041459297 RES(ph)AAS(ph)GLGGLLEEEGAGAGAAQEEVLEPGR ddPTM_HeLa_A486_30min_R1 1 RESAASGLGGLLEEEGAGAGAAQEEVLEPGR 31 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 RES(1)AAS(1)GLGGLLEEEGAGAGAAQEEVLEPGR 68.154 0.00089869 25203000 7460.8 9127 10282 2485.3 10199 9680.1 9394.4 10146 7311.8 9421.9 TRUE FALSE FALSE 6937.836448 8403.74328 14263.46576 5785.904 8919.746318 8485.867682 7043.821756 7835.977286 7945.592711 7062.594914 0.982335322 1.189894562 2.01957863 0.819232035 1.262955957 1.201522639 0.99734189 1.109503997 1.125024557 1 12.78598264 RES(ph)CGSSVLTDFEGK ddPTM_HeLa_A486_30min_R1 2 RESCGSSVLTDFEGK 15 1 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 RES(0.966)CGS(0.027)S(0.006)VLTDFEGK;RES(0.99)CGS(0.009)SVLTDFEGK ; 181.51 5.50E-18 586840000 385320 519020 320030 214250 435170 527710 618040 536550 446720 521200 TRUE FALSE FALSE 358311.0578 477890.965 443954.1867 498784.8276 380586.9208 462606.5056 463399.855 414389.2778 485442.0493 390688.1276 0.917128094 1.223203193 1.136339078 1.276682838 0.974145089 1.184081299 1.186111945 1.060665141 1.242530845 1 18.57565789 -4.248888154 24.33296014 1.145915738 0.917127885 0.327855703 0.096765775 1550.831962 3006508.51 0.022404499 0.374708347 5.64E-05 4.248888154 -0.228787853 RES(ph)CGSSVLTDFEGKDVATK ddPTM_HeLa_A485_30min_R1 2 RESCGSSVLTDFEGKDVATK 20 2 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 RES(0.999)CGS(0.001)SVLTDFEGKDVATK;RES(0.63)CGS(0.137)S(0.209)VLT(0.024)DFEGKDVATK ; 274.88 1.03E-72 695710000 725540 562140 375555 932930 1033420 835700 1330780 1655610 688950 1330630 TRUE FALSE FALSE 886933.8699 627877.383 514488.4226 983893.6036 930529.0762 879455.9598 1046447.982 1249569.052 827215.9456 998928.4294 0.887885302 0.62855092 0.515040325 0.984949046 0.931527273 0.88039937 1.047570527 1.250909489 0.828103317 1 19.93002179 -5.283930616 22.17822145 0.995032803 0.672298148 0.522355523 0.136572456 141.6490433 139677.2724 0.039463712 0.058619595 5.20E-06 5.283930616 -0.322734655 RES(ph)CGSSVLTDFEGKDVATK ddPTM_HeLa_A486_30min_R1 4 RESCGSSVLTDFEGKDVATK 20 2 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 RES(0.968)CGS(0.01)S(0.018)VLT(0.004)DFEGKDVATK;RES(1)CGSSVLTDFEGKDVATK;RES(0.993)CGS(0.007)SVLTDFEGKDVATK;RES(0.716)CGS(0.137)S(0.137)VLT(0.01)DFEGKDVATK ;;; 242.75 1.30E-46 1248360000 1259840 1227080 604390 746743 1376620 1410270 2014980 1981630 904597 1779350 TRUE FALSE FALSE 1171531.722 1129841.712 838425.9941 1738455.442 1203951.483 1236285.226 1510810.692 1530456.108 983008.1963 1333789.178 0.878348498 0.847091677 0.628604586 1.303395972 0.902655009 0.926897028 1.13272076 1.147449786 0.737004177 1 20.34709922 -5.242039293 24.98909068 1.023337143 0.79092262 0.320446032 0.15790605 1000.531889 1288775.153 0.041978249 0.072573354 5.73E-06 5.242039293 -0.232414523 RES(ph)DES(ph)GES(ph)APDEGGEGAR ddPTM_HeLa_A485_30min_R1 2 RESDESGESAPDEGGEGAR 19 1 Q7Z3C6;H7C152;Q7Z3C6-2 Q7Z3C6 ATG9A Autophagy-related protein 9A 3 0 RES(1)DES(1)GES(1)APDEGGEGAR;RES(1)DES(1)GES(1)APDEGGEGAR ; 182.13 3.89E-18 438150000 518750 538630 522090 656590 721410 533610 726210 646360 535300 901850 TRUE FALSE FALSE 634144.1478 601618.093 715232.817 692457.8491 649583.8874 561548.9945 571049.3009 487839.1965 642729.7999 677035.3923 0.936648446 0.888606563 1.056418653 1.022779395 0.959453368 0.829423396 0.843455612 0.720551986 0.949329691 1 19.36887173 -6.202005034 5.460129964 0.849550763 0.976776782 0.272996651 0.082266494 0.246365901 15.52692528 0.027400741 0.027182676 6.28E-07 6.202005034 0.127226019 RES(ph)DES(ph)GES(ph)APDEGGEGAR ddPTM_HeLa_A486_30min_R1 2 RESDESGESAPDEGGEGAR 19 1 Q7Z3C6;H7C152;Q7Z3C6-2 Q7Z3C6 ATG9A Autophagy-related protein 9A 3 0 RES(1)DES(1)GES(1)APDEGGEGAR;RES(1)DES(1)GES(1)APDEGGEGAR ; 154.84 6.82E-09 351780000 428440 462760 361760 180616 492160 451060 488730 480860 399520 523600 TRUE FALSE FALSE 398408.5685 426089.2123 501843.1603 420483.1758 430428.7036 395412.8032 366444.5847 371378.6751 434150.7153 392487.1519 1.015086905 1.085613147 1.278623154 1.071329784 1.096669538 1.007454133 0.933647338 0.946218681 1.106152681 1 18.5822859 -6.200887281 2.593884859 0.989148728 1.120472214 0.343020732 0.07646391 0.323108629 4.277577275 0.029326128 0.028270051 6.30E-07 6.200887281 0.131323486 RES(ph)EDDPES(ph)EPDDHEK ddPTM_HeLa_A485_30min_R1 4 RESEDDPESEPDDHEK 16 1 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 2 0 RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK ;;; 185.71 3.81E-18 3524340000 2530750 2149120 1596500 3851520 2993060 2701770 3945820 3553280 2261470 4947540 TRUE FALSE FALSE 3093706.607 2400440.889 2187111.786 4061918.785 2695060.437 2843230.499 3102763.323 2681832.509 2715326.286 3714209.331 0.832938139 0.646285838 0.588849898 1.093616009 0.725608117 0.765500877 0.835376535 0.722046678 0.731064419 1 21.8246237 -11.41530145 2.04174111 2.616234125 0.77062186 0.220073567 0.129181662 14903641.29 1305528.44 111230125.3 0.033559522 3.84E-12 11.41530145 -1.845612265 RES(ph)EDDPES(ph)EPDDHEK ddPTM_HeLa_A486_30min_R1 3 RESEDDPESEPDDHEK 16 1 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 2 0 RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK ;; 186.69 3.48E-18 2966880000 2264790 2426570 1223480 1496350 2258960 2824560 3503860 3308840 1932550 4008170 TRUE FALSE FALSE 2106039.916 2234279.756 1697244.222 3483578.421 1975620.173 2476094.505 2627157.168 2555489.363 2100064.99 3004498.143 0.700962296 0.743644911 0.564901072 1.159454343 0.657554133 0.824129151 0.874407985 0.850554483 0.698973636 1 21.5186926 -13.99999613 0.027957149 2.119861685 5.11E-11 0.155551436 0.152687353 3345.406121 7.034251643 404.0659552 173.8126647 1.00E-14 13.99999613 -2.119861685 RES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_HeLa_A485_30min_R1 2 RESESESDETPPAAPQLIK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 RES(0.839)ES(0.951)ES(0.21)DETPPAAPQLIK;RES(0.762)ES(0.872)ES(0.366)DETPPAAPQLIK ; 164.06 9.79E-13 424890000 480820 401700 379540 585030 570600 387060 513920 438170 416280 788520 TRUE FALSE FALSE 587776.7502 448675.3207 519947.64 616988.7075 513789.0605 407325.8631 404116.7937 330708.1205 499823.5777 591956.4756 0.992939134 0.757953227 0.87835451 1.042287284 0.867950739 0.688101034 0.68267991 0.558669656 0.844358662 1 19.17513158 -6.16105696 4.986719148 0.723154928 0.908795092 0.24345238 0.130507706 0.279631318 10.95177712 0.042762407 0.042765282 6.90E-07 6.16105696 0.185640164 RES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_HeLa_A486_30min_R1 3 RESESESDETPPAAPQLIK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 RES(0.998)ES(0.903)ES(0.099)DETPPAAPQLIK;RES(0.765)ES(0.857)ES(0.378)DETPPAAPQLIK;RES(0.984)ES(0.961)ES(0.055)DETPPAAPQLIK ;; 171.52 4.71E-13 603180000 571940 711310 432900 238629 649100 668820 724150 713970 560590 692540 TRUE FALSE FALSE 531849.9595 654943.2051 600530.4735 555540.3716 567683.8254 586307.7885 542960.0107 551414.6169 609182.3926 519123.4763 1.02451533 1.2616328 1.156816251 1.070150739 1.093542965 1.129418751 1.045916888 1.062203198 1.17348265 1 18.98571821 -5.251927136 22.48164059 1.085634474 1.15905263 0.151082397 0.069299646 283.9155652 671009.3405 0.017960205 0.030482877 5.60E-06 5.251927136 0.073418156 RES(ph)FLYR ddPTM_HeLa_A485_30min_R1 2 RESFLYR 7 1 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q07343-3;Q07343;E9PMG3;B7Z6T1;V9GYP2;P27815-2;P27815-6;Q08493;Q08493-3;Q08493-2;P27815-7;Q08499-6;Q08499-7;Q08499-12;P27815 Q08499-10;Q08499-6;P27815 PDE4D;PDE4B;PDE4C;PDE4A "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B;cAMP-specific 3,5-cyclic phosphodiesterase 4A;cAMP-specific 3,5-cyclic phosphodiesterase 4C" 1 0 RES(1)FLYR;RES(1)FLYR ; 148.32 0.00045321 230720000 70061 89142 82676 75698 113357 65775 93272 103324 71780 89436 TRUE FALSE FALSE 85645.82774 99566.38147 113261.2928 79833.19006 102070.7791 69218.87729 73343.67524 77983.62699 86185.58759 67141.25115 1.275606669 1.482939024 1.686910668 1.189033399 1.520239455 1.030944108 1.092378739 1.161486056 1.283645838 1 16.0349118 -6.260784479 24.99961046 1.122451809 1.434615046 0.543824114 0.145152868 48.89079962 1866344.216 0.049387534 0.046628951 5.49E-07 6.260784479 0.312163236 RES(ph)FLYR ddPTM_HeLa_A486_30min_R1 4 RESFLYR 7 1 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q07343-3;Q07343;E9PMG3;B7Z6T1;V9GYP2;P27815-2;P27815-6;Q08493;Q08493-3;Q08493-2;P27815-7;Q08499-6;Q08499-7;Q08499-12;P27815 Q08499-10;Q08499-6;P27815 PDE4D;PDE4B;PDE4C;PDE4A "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B;cAMP-specific 3,5-cyclic phosphodiesterase 4A;cAMP-specific 3,5-cyclic phosphodiesterase 4C" 1 0 RES(1)FLYR;RES(1)FLYR;RES(1)FLYR;RES(1)FLYR ;;; 163.65 6.76E-05 235930000 188750 191400 158740 54681.7 214867 186526 214344 204296 138545 199371 TRUE FALSE FALSE 175519.5997 176232.7669 220208.3792 127301.7611 187916.3773 163514.3186 160712.8641 157782.2606 150554.1922 149447.2039 1.174458907 1.179230941 1.47348611 0.851817617 1.25740979 1.094127654 1.075382208 1.055772583 1.007407219 1 17.18927638 -6.114758586 0.475812498 0.999881746 1.25417789 0.233098395 0.140115751 1.818465664 0.85408421 0.1261569 0.201177456 7.68E-07 6.114758586 0.254296144 RES(ph)INDR ddPTM_HeLa_A485_30min_R1 1 RESINDR 7 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 RES(1)INDR 117.52 0.0011379 0 152700 191250 172010 159510 196530 161930 177620 231460 203000 254880 TRUE FALSE FALSE 186667.5882 213615.0238 235643.6569 168223.6274 176962.7831 170408.4044 139670.036 174694.0721 243740.238 191343.1067 0.97556474 1.116397802 1.23152415 0.879172656 0.924845353 0.890590768 0.729945481 0.912988584 1.273838615 1 17.5458024 -5.276472769 24.94658774 0.92885477 1.108685796 0.212993966 0.141672379 1099.38915 1824337.154 0.041256557 0.061482813 5.29E-06 5.276472769 0.179831026 RES(ph)INDR ddPTM_HeLa_A486_30min_R1 1 RESINDR 7 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 RES(1)INDR 109.16 0.0018201 317190000 191190 164850 154570 80595 159540 189210 196820 167680 175250 255170 TRUE FALSE FALSE 177788.5683 151786.6856 214423.6435 187629.233 139529.0055 165867.1939 147573.5543 129502.9244 190440.8111 191273.7711 0.929497899 0.793557239 1.121030041 0.98094596 0.729472759 0.867171662 0.771530531 0.677055321 0.995645195 1 17.54527953 -5.742094721 24.95987315 0.821919182 0.956405802 0.167454703 0.122865483 377.3293345 486855.3455 0.035802379 0.046149058 1.81E-06 5.742094721 0.134486619 RES(ph)LGLESK ddPTM_HeLa_A485_30min_R1 3 RESLGLESK 9 1 Q96BH1 Q96BH1 RNF25 E3 ubiquitin-protein ligase RNF25 1 0 RES(1)LGLESK;RES(1)LGLESK;RES(1)LGLESK ;; 141.73 7.10E-05 649590000 1023380 962130 739430 1245590 1330000 1051900 1387810 1327600 859490 1511430 TRUE FALSE FALSE 1251027.35 1074642.734 1012975.927 1313633.428 1197580.53 1106975.857 1091293.056 1002004.018 1031981.759 1134658.317 1.102558657 0.947106912 0.892758562 1.157734807 1.055454768 0.975602823 0.961781216 0.883088771 0.909508831 1 20.11382649 -6.692093798 2.414638216 0.924563126 1.024667899 0.244465246 0.075464749 0.437376133 5.204845958 0.036124708 0.025122466 2.03E-07 6.692093798 0.100104773 RES(ph)LGLESK ddPTM_HeLa_A486_30min_R1 3 RESLGLESK 9 1 Q96BH1 Q96BH1 RNF25 E3 ubiquitin-protein ligase RNF25 1 0 RES(1)LGLESK;RES(1)LGLESK;RES(1)LGLESK ;; 178.52 2.40E-08 1089220000 1759460 1762990 1086720 784040 1765390 1973200 2351270 2270880 1513550 2372910 TRUE FALSE FALSE 1636130.94 1623284.252 1507527.087 1825284.743 1543958.325 1729766.646 1762957.377 1753850.197 1644745.733 1778717.891 0.919837231 0.912614788 0.847535798 1.02618001 0.868017538 0.972479478 0.991139396 0.986019315 0.924680491 1 20.76240628 -5.892143226 0.797259874 0.976443968 0.901682351 0.239183614 0.04911146 0.985920966 1.383091192 0.028045265 0.040736596 1.28E-06 5.892143226 -0.074761617 RES(ph)LSYIPK ddPTM_HeLa_A485_30min_R1 1 RESLSYIPK 9 1 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RES(0.995)LS(0.005)YIPK 128.85 0.0001518 76196000 327370 299260 256280 423560 421460 328620 443540 424880 326170 528370 TRUE FALSE FALSE 400192.3271 334255.8538 351088.6367 446698.0103 379497.9626 345826.0351 348774.0556 320677.5138 391629.3272 396657.0829 1.008912596 0.842682176 0.885118789 1.126156646 0.956740668 0.871851405 0.879283569 0.80845024 0.987324679 1 18.59753279 -6.216780121 9.328045838 0.895549684 0.961903232 0.077352051 0.08778872 1.169009553 237.3072802 0.029858623 0.029783564 6.07E-07 6.216780121 0.066353549 RES(ph)PLKIDPFEDLSFNLLAVSK ddPTM_HeLa_A485_30min_R1 1 RESPLKIDPFEDLSFNLLAVSK 22 2 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 RES(0.984)PLKIDPFEDLS(0.016)FNLLAVSK 53.201 0.014817 46473000 76104 52894 36065 106050 61783 56625 89007 80842 52145 142660 TRUE FALSE FALSE 93033.07224 59079.49318 49406.94429 111843.243 55631.66759 59589.79744 69989.92733 61015.37274 62610.0232 107097.4875 0.868676516 0.551642196 0.461326829 1.044312482 0.519448858 0.556407054 0.653516053 0.56971806 0.584607769 1 16.70856511 -10.04456362 6.392641534 1.00000028 0.640745264 0.283620683 0.168859295 6.59E-07 9.83E-08 0.159732445 0.038740778 9.02E-11 10.04456362 -0.359255016 RES(ph)PLKIDPFEDLSFNLLAVSK ddPTM_HeLa_A486_30min_R1 1 RESPLKIDPFEDLSFNLLAVSK 22 2 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 RES(0.999)PLKIDPFEDLS(0.001)FNLLAVSK 97.488 0.00039631 68455000 62234 55746 20895 47450 42091 65725 74201 65392 39233 91174 TRUE FALSE FALSE 57871.71798 51328.48394 28986.10359 110465.998 36811.5543 57616.51774 55635.12498 50503.6691 42633.74803 68343.43696 0.846777987 0.751037499 0.424124172 1.616336592 0.538626033 0.843043902 0.814052197 0.738968822 0.623816272 1 16.06051518 -7.08703429 4.550453333 0.761819135 0.835525194 0.002946158 0.308338134 1.75038786 63.06231437 0.147876891 0.084046979 8.18E-08 7.08703429 0.073706059 RES(ph)PPAGQK ddPTM_HeLa_A485_30min_R1 2 RESPPAGQK 9 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4;A0A0A0MQY8;X6R8W7;P47736-2 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 RES(1)PPAGQK;RES(1)PPAGQK ; 83.226 0.003545 645200000 575490 605840 442240 723140 521230 625480 818890 825010 594700 1012200 TRUE FALSE FALSE 703505.7651 676687.7179 605842.9791 762643.3071 469334.5111 658229.1656 643927.4618 622675.0039 714050.8351 759877.1682 0.925815111 0.890522503 0.797290673 1.003640245 0.617645234 0.866231008 0.847409935 0.819441655 0.939692446 1 19.5354067 -7.939319122 3.947002886 0.999087745 0.84447214 0.226983905 0.094366086 0.278123005 8.638386858 0.087907317 0.023173034 1.15E-08 7.939319122 -0.154615605 RES(ph)PPAGQK ddPTM_HeLa_A486_30min_R1 1 RESPPAGQK 9 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4;A0A0A0MQY8;X6R8W7;P47736-2 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 RES(1)PPAGQK 61.435 0.016921 202620000 346250 207890 235850 142770 261720 440940 314230 273230 333000 447790 TRUE FALSE FALSE 321979.663 191416.0393 327177.4363 332375.7752 228892.6372 386541.3059 235606.3304 211021.4936 361864.7081 335660.4694 0.959242128 0.570266852 0.974727339 0.990214236 0.681917169 1.151584238 0.701918611 0.628675441 1.078067694 1 18.35664312 -7.801500986 24.99930539 1.03903451 0.834875279 0.177709126 0.177796959 309.5406873 193152.6555 0.167027868 0.043128731 1.58E-08 7.801500986 -0.204159231 RES(ph)PS(ph)PAPKPR ddPTM_HeLa_A485_30min_R1 5 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RES(1)PS(1)PAPKPR;RES(1)PS(1)PAPKPR;RES(1)PS(1)PAPKPR;RES(1)PS(1)PAPKPR;RES(1)PS(1)PAPKPR ;;;; 114.64 0.00024919 6492528000 4055358 4000617 3306920 4796927 5331833 4615815 6496424 6226343 3844545 6390834 TRUE FALSE FALSE 4957458.396 4468454.357 4530287.32 5058970.976 4800976.985 4857491.936 5108409.941 4699322.617 4616109.917 4797716.698 1.033295359 0.931371033 0.944259031 1.054453877 1.00067955 1.012459101 1.064758564 0.979491477 0.962147248 1 22.19391654 -5.243906135 24.8816072 1.011639925 0.965814731 0.191857229 0.038208133 1205.568154 1710831.778 0.010487377 0.018103092 5.70E-06 5.243906135 -0.045825194 RES(ph)PS(ph)PAPKPR ddPTM_HeLa_A486_30min_R1 3 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RES(1)PS(1)PAPKPR;RES(1)PS(1)PAPKPR;RES(1)PS(1)PAPKPR ;; 112.24 0.00030832 3281840000 284305 272000 220531 104266 317828 323576 325390 293969 254513 285069 TRUE FALSE FALSE 264376.6877 250445.7294 305926.5092 242736.5173 277963.0486 283656.483 243973.9804 227038.676 276574.3918 213685.8669 1.237221214 1.17202758 1.431664684 1.135950266 1.300802213 1.327446158 1.141741304 1.062488031 1.294303623 1 17.70513197 -8.62507639 0.37410062 0.970735304 1.271591152 0.335925386 0.101933505 3.402704129 0.85888917 0.301997203 0.085231373 2.37E-09 8.62507639 0.300855848 RES(ph)PSEER ddPTM_HeLa_A485_30min_R1 2 RESPSEER 8 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RES(0.854)PS(0.146)EER;RES(1)PSEER ; 89.403 0.0023841 949190000 508707 716110 347079 500409 267297 504874 454771 630560 490302 538907 TRUE FALSE FALSE 621867.1171 799852.8352 475477.9653 527745.0766 240683.9721 531308.422 357605.4607 475914.1713 588701.1141 404567.4027 1.537116221 1.977057048 1.175275027 1.304467619 0.594916868 1.313275411 0.883920598 1.176353231 1.45513729 1 18.62602056 -4.83806464 6.497061991 1.102317586 1.753807408 0.513339056 0.251147173 0.144438171 9.632800354 0.064229093 0.13708879 1.45E-05 4.83806464 0.651489822 RES(ph)PSEER ddPTM_HeLa_A486_30min_R1 2 RESPSEER 8 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RES(0.954)PS(0.046)EER;RES(0.964)PS(0.036)EER ; 87.713 0.011652 327040000 576230 285160 500600 182815 232840 722750 371390 319600 754340 594760 TRUE FALSE FALSE 535839.2527 262562.8831 694445.7265 425602.559 203635.0361 633584.4534 278464.2938 246834.0568 819726.7986 445828.2248 1.201896208 0.588932841 1.557653123 0.954633501 0.456756716 1.421140292 0.624599966 0.553652827 1.838660616 1 18.76612843 -7.757910681 24.99992915 1.419330227 0.922717124 0.196090959 0.404452594 134.612414 953750.2127 0.287351168 0.098825424 1.75E-08 7.757910681 -0.496613103 RES(ph)PSEERLEPK ddPTM_HeLa_A485_30min_R1 2 RESPSEERLEPK 12 2 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RES(0.818)PS(0.182)EERLEPK;RES(0.794)PS(0.206)EERLEPK ; 77.324 0.0035011 1241410000 416740 420720 466860 655920 899110 659220 904830 1043620 633980 1024140 TRUE FALSE FALSE 509442.3753 469919.5442 639570.9417 691751.2487 809591.4514 693735.7399 711505.6787 787670.5587 761213.9708 768840.7459 0.662611052 0.611205307 0.831864004 0.899732815 1.053002791 0.902313962 0.925426602 1.024491174 0.990080163 1 19.55232527 -5.014711482 1.894184996 0.975081236 0.626637681 0.877983768 0.049533727 0.110383315 0.768614875 0.014710886 0.039865602 9.67E-06 5.014711482 -0.348443555 RES(ph)PSEERLEPK ddPTM_HeLa_A486_30min_R1 2 RESPSEERLEPK 12 2 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RES(0.83)PS(0.17)EERLEPK;RES(0.989)PS(0.011)EERLEPK ; 148.41 1.08E-07 1246570000 969490 1070000 918190 749370 1782170 1406470 1895400 2034550 1026630 1369910 TRUE FALSE FALSE 901533.7575 985209.3031 1273737.758 1744571.231 1558633.621 1232954.031 1421150.873 1571327.379 1115619.115 1026875.619 0.877938613 0.959424184 1.240401207 1.698911921 1.517840711 1.200684881 1.383956193 1.530202246 1.086420881 1 19.96983001 -4.814239046 3.564559209 1.375878788 0.903472938 0.402922373 0.202142914 0.196709663 5.029160105 0.053210929 0.134598181 1.53E-05 4.814239046 -0.47240585 RES(ph)PSPAPK ddPTM_HeLa_A485_30min_R1 2 RESPSPAPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RES(0.998)PS(0.002)PAPK;RES(1)PSPAPK ; 111.79 0.00050217 1322020000 1069140 822540 789930 1754950 1074400 825000 1130020 902420 1056930 2254170 TRUE FALSE FALSE 1306966.505 918728.8979 1082157.979 1850818.475 967428.9636 868195.7243 888581.9956 681100.0801 1269046.156 1692246.904 0.772326131 0.542904759 0.639479958 1.093704749 0.571683104 0.513043175 0.525090041 0.402482686 0.749917848 1 20.69050865 -8.013453603 24.23845836 1.000000021 0.63188906 0.279581827 0.179653707 669.0879804 1205452.918 0.183728144 0.047438403 9.69E-09 8.013453603 -0.368110961 RES(ph)PSPAPK ddPTM_HeLa_A486_30min_R1 6 RESPSPAPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RES(0.998)PS(0.002)PAPK;RES(0.999)PS(0.001)PAPK;RES(1)PSPAPK;RES(1)PSPAPK;RES(0.995)PS(0.005)PAPK;RES(0.995)PS(0.005)PAPK ;;;;; 111.96 0.00049747 2860160000 3431730 3474900 2495270 1535270 3138940 4891960 4496730 3901870 4000100 4445490 TRUE FALSE FALSE 3191183.448 3199536.269 3461505.37 3574186.148 2745224.876 4288439.713 3371600.592 3013499.378 4346831.889 3332310.369 0.957648927 0.960155542 1.038770399 1.072585009 0.823820284 1.286926858 1.011790686 0.904327342 1.304449888 1 21.66809135 -6.247756578 24.99054628 1.089912663 0.979469544 0.196577041 0.130664849 1585.399137 2895606.489 0.042329397 0.042102061 5.65E-07 6.247756578 -0.110443119 RES(ph)PSPAPKPR ddPTM_HeLa_A485_30min_R1 11 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RES(0.995)PS(0.005)PAPKPR;RES(0.998)PS(0.002)PAPKPR;RES(0.986)PS(0.014)PAPKPR;RES(0.797)PS(0.203)PAPKPR;RES(0.98)PS(0.02)PAPKPR;RES(0.996)PS(0.004)PAPKPR;RES(0.906)PS(0.094)PAPKPR;RES(0.5)PS(0.5)PAPKPR;RES(0.964)PS(0.036)PAPKPR;RES(0.915)PS(0.085)PAPKPR;RES(0.991)PS(0.009)PAPKPR ;;;;;;;;;; 143.21 7.49E-07 88952780000 8461150 10214620 8119516 10515760 11800962 10809031 14278139 14738602 9086795 13081270 TRUE FALSE FALSE 10343303.63 11409130.95 11123262.85 11090209.34 10626016.79 11374975.15 11227497.96 11123936.75 10910431.41 9820350.132 1.053252021 1.161784539 1.132674772 1.129308955 1.082040522 1.158306475 1.143288967 1.132743395 1.111002282 1 23.22734303 -8.221843895 3.874370888 1.000002117 1.12613553 0.578632155 0.031553713 1.589530347 27.07360675 0.029253322 0.007689832 6.00E-09 8.221843895 0.126133413 RES(ph)PSPAPKPR ddPTM_HeLa_A486_30min_R1 13 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RES(0.877)PS(0.123)PAPKPR;RES(0.952)PS(0.048)PAPKPR;RES(1)PSPAPKPR;RES(0.937)PS(0.063)PAPKPR;RES(0.992)PS(0.008)PAPKPR;RES(0.977)PS(0.023)PAPKPR;RES(0.973)PS(0.027)PAPKPR;RES(0.992)PS(0.008)PAPKPR;RES(0.997)PS(0.003)PAPKPR;RES(0.989)PS(0.011)PAPKPR;RES(0.5)PS(0.5)PAPKPR;RES(0.998)PS(0.002)PAPKPR;RES(0.998)PS(0.002)PAPKPR ;;;;;;;;;;;; 169.4 1.73E-08 1.52E+11 14945694 16360970 10700644 5997108 16555560 15405548 18257270 18173270 12447385 17203060 TRUE FALSE FALSE 13898078.03 15064467.15 14844219.93 13961570.5 14479007.29 13504968.12 13689107.94 14035613.14 13526334.35 12895301.8 1.077762913 1.168213616 1.151133968 1.082686603 1.122812596 1.047278174 1.061557779 1.088428433 1.048935074 1 23.6203422 -6.999467608 0.286045768 0.994304329 1.153578158 0.587872259 0.030985026 1.290642462 0.340673457 0.057288436 0.075786687 1.00E-07 6.999467608 0.159273829 RES(ph)PTCNLFPASK ddPTM_HeLa_A485_30min_R1 2 RESPTCNLFPASK 13 1 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9;Q6PGN9-4;S4R3S8 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 RES(0.885)PT(0.115)CNLFPASK;RES(0.533)PT(0.467)CNLFPASK ; 99.569 0.00049538 205710000 398410 400140 335790 436900 479750 405370 467890 456200 393300 588430 TRUE FALSE FALSE 487034.93 446932.8922 460012.6944 460766.7407 431984.4055 426594.5464 367921.4792 344316.2347 472231.7024 441745.2303 1.102524479 1.011743561 1.04135294 1.043059911 0.97790395 0.965702666 0.832881611 0.77944528 1.069013699 1 18.75285503 -6.118436735 1.809628972 0.905120925 1.047247641 0.324536826 0.079726507 0.37763255 2.457991241 0.031286303 0.031662406 7.61E-07 6.118436735 0.142126715 RES(ph)VAS(ph)GDDR ddPTM_HeLa_A485_30min_R1 2 RESVASGDDR 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 RES(1)VAS(1)GDDR;RES(1)VAS(1)GDDR ; 77.1 0.004465 811880000 1634420 2408600 1476670 1107470 1181590 1566800 1421280 1377080 1200610 1137800 TRUE FALSE FALSE 1997991.09 2690264.818 2022951.682 1167968.282 1063946.751 1648835.225 1117611.917 1039348.971 1441561.414 854167.3997 2.339109513 3.149575621 2.368331645 1.367376327 1.245595127 1.930342022 1.308422585 1.216797751 1.687680208 1 19.70415931 -5.150746581 3.669570913 1.413906212 2.747879245 0.773544023 0.307148546 0.102544561 2.49888714 0.082127966 0.15213531 7.07E-06 5.150746581 1.333973033 RES(ph)VAS(ph)GDDR ddPTM_HeLa_A486_30min_R1 2 RESVASGDDR 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 RES(1)VAS(1)GDDR;RES(1)VAS(1)GDDR ; 95.57 0.0010606 360532000 782500 765940 575237 158845 556812 577250 516352 472501 675598 750250 TRUE FALSE FALSE 727650.7908 705244.1249 797984.1718 369799.1876 486971.4469 506034.764 387155.2682 364922.8369 734159.3786 562382.5167 1.293871643 1.254029249 1.418934885 0.657558115 0.86590787 0.899805291 0.688419815 0.648887236 1.305444883 1 19.10119222 -5.255091702 24.99684601 0.845878741 1.315453679 0.551377018 0.187689756 366.2748567 1442368.756 0.050125223 0.084181375 5.56E-06 5.255091702 0.469574938 RES(ph)VAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A485_30min_R1 2 RESVASGDDRAEEDMDEAIEK 21 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 RES(1)VAS(1)GDDRAEEDMDEAIEK;RES(1)VAS(1)GDDRAEEDMDEAIEK ; 139.16 8.72E-07 1497900000 1550410 1183040 838310 1971250 1267640 1261520 1582650 1264220 983220 2221800 TRUE FALSE FALSE 1895293.356 1321386.237 1148435.754 2078934.396 1141429.311 1327571.237 1244503.898 954168.0628 1180543.235 1667946.149 1.136303685 0.79222356 0.688532873 1.246403786 0.684332232 0.795931713 0.746129543 0.572061672 0.707782584 1 20.66964128 RES(ph)VAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A486_30min_R1 1 RESVASGDDRAEEDMDEAIEK 21 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 RES(1)VAS(1)GDDRAEEDMDEAIEK 76.259 0.015496 626360000 896950 931810 507200 417550 702290 1036600 1012500 991410 914220 1304700 TRUE FALSE FALSE 834078.4369 857969.982 703601.4233 972077.5018 614202.2396 908714.8314 759161.7909 765687.5853 993465.3257 977994.6278 0.852845622 0.877274739 0.71943281 0.993949736 0.6280221 0.929161373 0.776243314 0.782915942 1.015818796 1 19.89946701 -7.766916875 24.94165222 1.007909537 0.820120695 0.368304203 0.098447134 137.1393397 624427.0854 0.078885335 0.022662548 1.71E-08 7.766916875 -0.187788842 RES(ph)VASGDDR ddPTM_HeLa_A486_30min_R1 1 RESVASGDDR 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 RES(0.778)VAS(0.222)GDDR 100.11 0.00098841 275410000 393030 355630 234400 93481 214370 290130 264160 260060 308760 423380 TRUE FALSE FALSE 365480.6266 327448.5836 325165.9574 217628.4923 187481.7157 254336.7104 198064.374 200850.0151 335523.5654 317362.8923 1.151617393 1.031779681 1.024587201 0.685740197 0.590748699 0.801406581 0.624094306 0.632871769 1.057223682 1 18.27577392 -5.178090046 4.661295108 0.74293802 1.075834509 0.444793082 0.151549433 0.187979177 7.265331822 0.040799186 0.072590235 6.64E-06 5.178090046 0.332896488 RES(ph)VNLGK ddPTM_HeLa_A485_30min_R1 3 RESVNLGK 8 1 P46013 P46013 MKI67 Antigen KI-67 1 0 RES(1)VNLGK;RES(1)VNLGK;RES(1)VNLGK ;; 121.29 0.00042061 619930000 796697 840660 602890 871580 1039460 827259 1069440 1206880 725956 1362290 TRUE FALSE FALSE 973919.4991 938967.8742 825924.0993 919192.2084 935967.7126 870573.0021 840945.4075 910890.7877 871648.7103 1022696.174 0.952305801 0.91812984 0.807594787 0.898793045 0.915196259 0.85125282 0.822282735 0.890675853 0.852304655 1 19.96394618 -6.260349429 24.99013973 0.872656675 0.894476492 0 0.056436654 439.1396352 10068683.21 0.018939306 0.01797094 5.49E-07 6.260349429 0.021819817 RES(ph)VNLGK ddPTM_HeLa_A486_30min_R1 2 RESVNLGK 8 1 P46013 P46013 MKI67 Antigen KI-67 1 0 RES(1)VNLGK;RES(1)VNLGK ; 131.42 0.00031449 823180000 622220 603540 414990 235119 588750 648750 717670 706400 522970 750760 TRUE FALSE FALSE 578605.5911 555713.2923 575685.2418 547368.9143 514903.4851 568713.821 538101.3753 545568.1406 568301.4607 562764.8094 1.028148138 0.987469869 1.022958849 0.972642399 0.914953239 1.010571044 0.956174527 0.96944253 1.009838304 1 19.10217259 -5.274051691 23.53463513 0.973000307 1.010320042 0.250271975 0.028570348 457.3515324 853419.4403 0.007895062 0.011811945 5.32E-06 5.274051691 0.037319735 RESPT(ph)CNLFPASK ddPTM_HeLa_A486_30min_R1 1 RESPTCNLFPASK 13 1 Q5T2Z1;Q6PGN9-2;Q5T2Z0;Q6PGN9-3;Q6PGN9;Q6PGN9-4;S4R3S8 Q5T2Z1 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 RES(0.429)PT(0.571)CNLFPASK 72.184 0.0084558 155450000 252290 281090 154790 89250 230270 242810 258070 272440 195880 276970 TRUE FALSE FALSE 234605.7738 258815.4047 214728.8334 207778.5104 201387.3894 212854.5709 193498.1564 210411.3593 212859.0361 207614.9092 1.130004462 1.246612807 1.034264997 1.000788003 0.970004467 1.025237406 0.93200511 1.013469409 1.025258913 1 17.66355052 -4.879939849 5.223463187 0.995148679 1.186703671 0.805244405 0.037345343 0.074446308 3.06379073 0.009436778 0.020503951 1.32E-05 4.879939849 0.191554991 RESVAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A485_30min_R1 1 RESVASGDDRAEEDMDEAIEK 21 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 RES(0.414)VAS(0.586)GDDRAEEDMDEAIEK 110.01 3.89E-05 263850000 191910 178400 139920 213270 180200 193370 242100 229490 151500 304190 TRUE FALSE FALSE 234599.7174 199262.3281 191682.2306 224920.4001 162258.6553 203494.5542 190373.3572 173207.2177 181904.6604 228361.0312 1.027319399 0.872575882 0.839382401 0.98493337 0.710535657 0.89110893 0.833650804 0.758479749 0.796566119 1 17.80095696 -1.000000101 0.851099941 0.836035447 66.89069537 0.256043538 0.086600241 890.630021 2.44613881 0.02852195 113917.9939 0.099999977 1.000000101 66.05465992 RESVAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_A486_30min_R1 1 RESVASGDDRAEEDMDEAIEK 21 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 RES(0.411)VAS(0.589)GDDRAEEDMDEAIEK 116.24 2.05E-05 243890000 209030 199960 118920 82547 159570 230450 221100 206020 170180 266990 TRUE FALSE FALSE 194378.0764 184114.4414 164969.0088 192173.5877 139555.2427 202019.422 165778.4414 159113.7434 184931.3394 200133.9662 0.971239816 0.919955992 0.824292907 0.96022475 0.697309134 1.009420969 0.828337361 0.795036177 0.924037748 1 17.61060651 -4.34681737 0.002600028 1.757794332 2.15E-07 0.005653469 0.096744532 1325025.202 553.2210432 183589.8212 190468.2267 4.50E-05 4.34681737 -1.757794117 RET(ph)DDEGEDD ddPTM_HeLa_A485_30min_R1 2 RETDDEGEDD 10 1 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 RET(1)DDEGEDD;RET(1)DDEGEDD ; 197.3 1.49E-13 2188700000 1220680 1425910 712990 2554620 658770 1329020 1146170 1394800 1472240 2546950 TRUE FALSE FALSE 1492216.055 1592657.771 976754.671 2694172.422 593180.5457 1398605.432 901281.4162 1052723.113 1767705.064 1912042.238 0.780430487 0.832961605 0.510843668 1.409054867 0.310234018 0.731472038 0.471371081 0.550575239 0.924511514 1 20.86668296 RET(ph)DDEGEDD ddPTM_HeLa_A486_30min_R1 2 RETDDEGEDD 10 1 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 RET(1)DDEGEDD;RET(1)DDEGEDD ; 215.71 1.06E-16 1008720000 1181590 714480 1516090 541370 726820 2888300 1100200 1032730 2931200 1901990 TRUE FALSE FALSE 1098766.643 657862.0027 2103160.65 1260336.719 635655.4583 2531970.912 824918.3233 797599.9233 3185278.776 1425719.324 0.770675282 0.461424624 1.475157568 0.884000587 0.445848946 1.775925225 0.578597982 0.559436847 2.234155575 1 20.44325856 -7.746709129 24.99962553 1.617078295 0.882471871 0.264365486 0.498820508 270.5443664 459162.4732 0.326874174 0.122391388 1.79E-08 7.746709129 -0.734606424 RET(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RETPSPR 7 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RET(1)PS(1)PR;RET(1)PS(1)PR ; 61.353 0.0071703 368720000 170632 164631 120936 237300 120541 124834 140471 114829 178954 242925 TRUE FALSE FALSE 208588.4997 183883.1634 165675.259 250263.0981 108539.5148 131370.1152 110458.2233 86667.00771 214868.4263 182368.2682 1.143776282 1.008306791 0.908465385 1.372295195 0.595166669 0.720356214 0.605687735 0.475230744 1.178211695 1 17.4764952 -5.777342069 24.99946166 0.726261677 1.086807437 0.358232528 0.222864121 248.6218757 390838.8218 0.067147735 0.076380558 1.67E-06 5.777342069 0.36054576 RET(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 4 RETPSPR 7 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RET(1)PS(1)PR;RET(1)PS(1)PR;RET(1)PS(1)PR;RET(1)PS(1)PR ;;; 70.977 0.0076998 936040000 734840 533220 563380 215372 399808 921660 521120 456630 939150 834140 TRUE FALSE FALSE 683331.5107 490965.7052 781535.8238 501396.9003 349660.3526 807954.96 390730.2642 352665.3172 1020556.278 625265.9147 1.092865443 0.78521105 1.249925521 0.801893864 0.559218637 1.292178161 0.624902549 0.564024536 1.632195605 1 19.25411035 -7.760968511 25 1.316097709 0.874132983 0.275051591 0.288832415 15.84128916 841474.6156 0.218344187 0.07091646 1.73E-08 7.760968511 -0.441964726 RET(ph)PS(ph)PRPMR ddPTM_HeLa_A485_30min_R1 2 RETPSPRPMR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RET(1)PS(1)PRPMR;RET(1)PS(1)PRPMR ; 77.776 0.0043921 2258000000 1271370 1670680 1507480 1547210 1849550 1496160 1707640 1770480 1493350 1992590 TRUE FALSE FALSE 1554181.87 1866051.493 2065159.583 1631730.165 1665402.308 1574496.624 1342788.764 1336267.004 1793051.647 1495873.984 1.038979143 1.247465704 1.38057056 1.090820605 1.113330619 1.052559668 0.897661687 0.893301855 1.198664905 1 20.51255721 -5.923554759 1.628879326 0.993437448 1.217465342 0.363767387 0.115410545 0.382656904 2.085137484 0.045107452 0.053133812 1.19E-06 5.923554759 0.224027894 RET(ph)PS(ph)PRPMR ddPTM_HeLa_A486_30min_R1 6 RETPSPRPMR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RET(1)PS(1)PRPMR;RET(1)PS(1)PRPMR;RET(1)PS(1)PRPMR;RET(1)PS(1)PRPMR;RET(1)PS(1)PRPMR;RET(1)PS(1)PRPMR ;;;;; 65.374 0.015213 4902280000 3154290 4007820 3204580 1190872 4083990 3510090 3667960 3736950 3409890 3530660 TRUE FALSE FALSE 2933190.56 3690225.747 4445479.198 2772410.199 3571737.893 3077050.784 2750197.612 2886128.062 3705462.011 2646559.755 1.108303168 1.394348168 1.679719942 1.047552466 1.349577649 1.162660612 1.039159462 1.090520649 1.400105176 1 21.3356868 -5.294178314 24.98712733 1.162943604 1.39414648 0.274423569 0.177417598 845.5816919 645366.0762 0.050050404 0.074242842 5.08E-06 5.294178314 0.231202876 RET(ph)PSPRPMR ddPTM_HeLa_A486_30min_R1 2 RETPSPRPMR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RET(1)PSPRPMR;RET(0.995)PS(0.005)PRPMR ; 82.543 0.0059048 64997000 10091.3 10796.7 13114.6 4052.2 12143.9 8771 11426.7 9324.6 11471.9 10184.5 TRUE FALSE FALSE 9383.951982 9941.130171 18192.92434 9433.726387 10620.69882 7688.923197 8567.618801 7201.592135 12466.29353 7634.23491 1.229193507 1.302177663 2.383071068 1.235713401 1.39119361 1.007163558 1.122262925 0.943328601 1.632946022 1 12.89826786 -5.48807098 24.99937475 1.181379101 1.638690769 0.259808117 0.347329543 832.3775556 597823.8216 0.098089097 0.14540829 3.25E-06 5.48807098 0.457311667 REVLYDS(ph)EGLS(ph)GEER ddPTM_HeLa_A485_30min_R1 2 REVLYDSEGLSGEER 15 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 REVLY(0.004)DS(0.997)EGLS(0.999)GEER;REVLY(0.034)DS(0.968)EGLS(0.998)GEER ; 111.4 0.00010166 1561450000 1001510 1428610 1376550 1081680 1505360 1339270 1538800 1582820 1181450 1414200 TRUE FALSE FALSE 1224292.444 1595673.512 1885793.128 1140769.439 1355481.073 1409392.106 1210022.809 1194630.913 1418556.178 1061665.966 1.153180457 1.502990171 1.776258435 1.074508815 1.276749105 1.327528762 1.139739661 1.125241791 1.336160547 1 20.01789849 -5.286345808 24.99802753 1.196210222 1.48002784 0.376360606 0.173193947 805.4676904 808428.2015 0.048799531 0.072412636 5.17E-06 5.286345808 0.283817618 REVLYDS(ph)EGLS(ph)GEER ddPTM_HeLa_A486_30min_R1 2 REVLYDSEGLSGEER 15 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 REVLY(0.014)DS(0.987)EGLS(1)GEER;REVLYDS(1)EGLS(1)GEER ; 158.35 3.90E-09 1338280000 1329350 1456400 1246680 481230 1581570 1261550 1394250 1383270 1271660 1477080 TRUE FALSE FALSE 1236169.43 1340989.56 1729427.883 1120327.76 1383194.743 1105912.788 1045393.903 1068329.618 1381888.513 1107209.554 1.116472871 1.211143415 1.561969798 1.011847989 1.249261929 0.998828798 0.944169872 0.964884754 1.248082179 1 20.07849687 -5.884899068 1.584419784 1.028697038 1.268133973 0.277471671 0.154737865 0.481498194 2.496338798 0.059133418 0.072129577 1.30E-06 5.884899068 0.239436936 RFDAMPFTLR ddPTM_HeLa_A485_30min_R1 2 RFDAMPFTLR 10 1 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ; ; 80.555 0.017697 423550000 233520 265570 213200 342230 306960 250930 363760 349760 206609 420750 FALSE FALSE TRUE 285465.7184 296626.1013 292071.552 360925.1583 276397.9846 264068.3068 286039.7044 263980.8116 248073.5312 315864.7683 0.903759289 0.939092077 0.924672775 1.142657221 0.875051643 0.836016971 0.905576478 0.835739969 0.785378922 1 18.2689475 -5.962596395 24.99999511 0.863362041 0.975751162 0.284197687 0.080645794 205.8162703 137563.5801 0.024772159 0.028088927 1.09E-06 5.962596395 0.112389121 RFDAMPFTLR ddPTM_HeLa_A486_30min_R1 2 RFDAMPFTLR 10 1 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ; ; 85.288 0.010394 694320000 840960 680310 268080 458300 545460 759920 1051430 877140 491700 1389170 FALSE FALSE TRUE 782013.0467 626399.758 371887.7554 1066945.561 477043.3206 666168.7967 788351.0931 677434.3698 534320.9519 1041312.79 0.750987652 0.601548127 0.357133571 1.024615823 0.45811722 0.639739378 0.757074244 0.650558004 0.513122433 1 19.98997206 -10.92734208 2.705446637 1.22916154 0.639631638 0.277684524 0.174565954 56617078.5 31340607.72 82023576.34 0.042599004 1.18E-11 10.92734208 -0.589529901 RFDDAVVQSDMK ddPTM_HeLa_A485_30min_R1 2 RFDDAVVQSDMK 12 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 116.19 0.0010312 127560000 215419 190786 180721 265349 261892 207265 280446 247135 210243 351806 FALSE FALSE TRUE 263338.2134 213096.7631 247577.2183 279844.344 235817.1129 218117.0749 220526.4211 186524.7538 252436.8416 264107.2387 0.997088208 0.806856958 0.93741171 1.059586043 0.892883944 0.825865569 0.834988174 0.706246276 0.9558119 1 18.01076432 -5.998578316 24.9988142 0.846039976 0.943722963 0.137614624 0.095325353 81.8409922 1439031.298 0.029406256 0.03308997 1.00E-06 5.998578316 0.097682987 RFDDAVVQSDMK ddPTM_HeLa_A486_30min_R1 3 RFDDAVVQSDMK 12 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 128.21 8.43E-05 495000000 810040 884270 567860 341629 1011610 912730 1011970 1026220 697540 1048760 FALSE FALSE TRUE 753260.3791 814197.2247 787750.5998 795329.577 884724.4409 800126.6526 758764.4025 792572.1082 758003.3288 786143.6697 0.958171398 1.035685023 1.002044067 1.011684769 1.125397908 1.017786803 0.965172693 1.00817718 0.964204582 1 19.58443347 -6.590692701 7.707701993 0.985635793 1.029473391 0.190437092 0.041218079 0.419294083 41.07981342 0.016261153 0.012572258 2.57E-07 6.590692701 0.043837598 RFDDAVVQSDMKHWPFMVVNDAGRPK ddPTM_HeLa_A485_30min_R1 1 RFDDAVVQSDMKHWPFMVVNDAGRPK 26 3 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 178.33 2.61E-16 210590000 96288 152750 82700 56048 135710 200780 249780 399820 94135 100560 FALSE FALSE TRUE 117706.9334 170612.7838 113294.1714 59109.76032 122198.2359 211292.5303 196412.4625 301763.5181 113027.031 75492.24267 1.559192432 2.260004177 1.500739247 0.782991182 1.618685994 2.798864133 2.60175689 3.997278494 1.4972006 1 16.20404079 -6.231608058 8.908210362 2.580200578 1.53816609 0.184028289 0.826182894 0.503909754 143.5211298 0.267790691 0.265099865 5.87E-07 6.231608058 -1.042034488 RFDDPGLMLMGFKPLVLLK ddPTM_HeLa_A485_30min_R1 2 RFDDPGLMLMGFKPLVLLK 19 2 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 147.56 5.74E-10 3604300 8181.5 8261.9 7351.7 6666.7 6914.8 8214.2 10443.7 11641.3 5887.8 8411.78 FALSE FALSE TRUE 10001.44645 9228.057336 10071.39976 7030.88494 6226.338233 8644.28281 8212.318178 8786.252922 7069.427454 6314.878053 1.583790908 1.461319959 1.594868448 1.113384119 0.985979172 1.368875652 1.30047138 1.391357497 1.119487565 1 12.62453916 -5.25795577 24.99604686 1.203556241 1.538125806 0.594844548 0.136810101 236.1675047 1694571.86 0.039326023 0.064761557 5.52E-06 5.25795577 0.334569564 RFDDPGLMLMGFKPLVLLK ddPTM_HeLa_A486_30min_R1 1 RFDDPGLMLMGFKPLVLLK 19 2 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 90.223 0.00097195 1391700 2379.5 3428.5 2190.8 900.73 3053 2682.5 3540.2 3166 2604.7 3956.7 FALSE FALSE TRUE 2212.709338 3156.813174 3039.136432 2096.94496 2670.064272 2351.560424 2654.404516 2445.170913 2830.477493 2965.916566 0.746045712 1.064363445 1.024687095 0.707014143 0.900249286 0.792861286 0.894969382 0.824423364 0.954334834 1 11.5342623 -4.539203439 0.005350752 1.75528324 4.08E-07 0.032859925 0.113349671 184354.3962 168.3784015 26646.27515 28611.54855 2.89E-05 4.539203439 -1.755282832 RFDEILEASDGIMVAR ddPTM_HeLa_A485_30min_R1 7 RFDEILEASDGIMVAR 16 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;; ;;;;;; 302.33 1.78E-67 1068666000 551181 703442 695698 531226 748267 741487 874168 1009304 573777 788570 FALSE FALSE TRUE 673789.3119 785703.4228 953065.6406 560245.5312 673766.9102 780310.1128 687394.8655 761770.6115 688928.7809 591994.0116 1.138169135 1.327215153 1.609924462 0.946370268 1.138131294 1.31810474 1.161151721 1.286787698 1.163742821 1 19.17522306 -13.99999996 0.148932628 0.15527418 1.311839536 0.165018362 0.163384718 258.4767132 2.291409396 64.53563593 0.873692446 1.00E-14 13.99999996 1.156565356 RFDEILEASDGIMVAR ddPTM_HeLa_A486_30min_R1 3 RFDEILEASDGIMVAR 16 1 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;; ;; 200.58 9.38E-25 462220000 267699 296750 311496 133043 387340 270520 338440 335310 287935 323951 FALSE FALSE TRUE 248934.6825 273234.4493 432115.5934 309730.8276 338756.2054 237145.9928 253758.7323 258967.2328 312893.4376 242831.561 1.025133148 1.125201552 1.779486948 1.275496588 1.395025441 0.976586371 1.044998975 1.066448001 1.288520472 1 17.88959642 -6.256101262 24.61765821 1.077569275 1.33228979 0.268326567 0.20156308 522.4036941 2409156.153 0.070542977 0.068544341 5.54E-07 6.256101262 0.254720515 RFELYFQGPSSNKPR ddPTM_HeLa_A485_30min_R1 2 RFELYFQGPSSNKPR 15 2 P33993;C9J8M6;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 237.4 8.39E-31 273970000 190423 210421 202894 192956 257000 216040 295900 314170 172092 268360 FALSE FALSE TRUE 232781.9394 235027.9055 277952.9337 203496.6977 231412.1776 227351.5203 232678.5477 237119.3149 206629.2859 201462.7908 1.155458725 1.166607018 1.379673798 1.010095695 1.148659644 1.128503777 1.15494552 1.176988137 1.02564491 1 17.62015388 -8.402692528 0.193285279 0.923338433 1.237960527 0.292768167 0.087983347 8.354828245 0.903522401 0.815189428 0.391194402 3.96E-09 8.402692528 0.314622094 RFELYFQGPSSNKPR ddPTM_HeLa_A486_30min_R1 2 RFELYFQGPSSNKPR 15 2 P33993;C9J8M6;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 229.16 1.65E-23 218905000 238240 221060 160006 78032 235650 215890 262420 238780 197883 275860 FALSE FALSE TRUE 221540.6063 203542.4005 221964.6083 181662.4395 206092.5797 189255.6868 196759.7404 184415.0065 215035.6578 206782.8605 1.071368322 0.984329166 1.073418792 0.878517877 0.996661808 0.91523875 0.951528284 0.891829265 1.039910451 1 17.65775708 -5.24719365 24.99727471 0.949013223 1.037167801 0.374520085 0.0527207 810.3244779 1421890.997 0.01325417 0.022821474 5.66E-06 5.24719365 0.088154578 RFIGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 RFIGSPR 7 1 P23443-3;P23443-5;P23443-2;P23443;K7ERJ3;P23443-4 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 RFIGS(1)PR;RFIGS(1)PR;RFIGS(1)PR;RFIGS(1)PR ;;; 98.418 0.0028824 2415830000 178654 290217 250820 141183 258758 223807 241110 259035 174830 193223 TRUE FALSE FALSE 218394.966 324155.3536 343608.7555 148895.4698 232995.145 235525.1884 189594.8788 195506.2601 209916.7774 145056.0621 1.505590065 2.234690153 2.368799694 1.02646844 1.606242039 1.623683871 1.307045539 1.347797929 1.447142397 1 17.14625106 -5.78909643 0.324954051 1.085926208 2.209258695 0.357858482 0.343433577 3.089718278 0.548339235 0.428832707 1.281522453 1.63E-06 5.78909643 1.123332487 RFIGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 RFIGSPR 7 1 P23443-3;P23443-5;P23443-2;P23443;K7ERJ3;P23443-4 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 RFIGS(1)PR;RFIGS(1)PR;RFIGS(1)PR;RFIGS(1)PR ;;; 94.407 0.0034163 2054830000 288400 308505 294068 83161 336648 265993 316565 292452 218369 299964 TRUE FALSE FALSE 268184.6493 284057.9402 407939.005 193603.0107 294422.4687 233177.4881 237357.0887 225867.0638 237297.4007 224851.062 1.192721293 1.263315982 1.81426319 0.86102778 1.309411066 1.037030851 1.055619158 1.004518555 1.055353702 1 17.77861017 -5.285598091 24.99958702 1.057310965 1.407421893 0.465799355 0.184649396 695.2106662 719406.7874 0.051352516 0.076210385 5.18E-06 5.285598091 0.350110928 RFILNLPTFSVR ddPTM_HeLa_A485_30min_R1 1 RFILNLPTFSVR 12 1 A0A087WVV1;P49721 A0A087WVV1 PSMB2 Proteasome subunit beta type-2 0 0 191.53 3.45E-10 37227000 15629 20850 20208 13610 22569 15374 24328 23155 13538 21257 FALSE FALSE TRUE 19105.61713 23288.22613 27683.78013 14353.47984 20321.95112 16178.95887 19130.12406 17476.19994 16254.95242 15958.02111 1.197242252 1.459342983 1.734787787 0.899452366 1.273463106 1.013844935 1.198777964 1.095135783 1.018607026 1 13.96199414 -5.269344825 24.99929383 1.086627724 1.46334621 0.568237268 0.156374111 427.650082 1352352.516 0.043083464 0.065213544 5.38E-06 5.269344825 0.376718487 RFILNLPTFSVR ddPTM_HeLa_A486_30min_R1 1 RFILNLPTFSVR 12 1 A0A087WVV1;P49721 A0A087WVV1 PSMB2 Proteasome subunit beta type-2 0 0 194.98 3.90E-14 36686000 15506 16393 14673 6473.8 20698 14740 17965 21500 12905 18013 FALSE FALSE TRUE 14419.10947 15093.95898 20354.77856 15071.33357 18101.86384 12921.52867 13469.96699 16604.91934 14023.61579 13502.42756 1.067890156 1.117870021 1.507490299 1.116194366 1.340637731 0.956978189 0.997595946 1.229772889 1.038599595 1 13.72093119 -6.263154733 24.99954273 1.056013044 1.232877911 0.312090042 0.137091437 215.2251206 3136667.31 0.047803237 0.04433391 5.46E-07 6.263154733 0.176864866 RFLDFIGHILT ddPTM_HeLa_A485_30min_R1 1 RFLDFIGHILT 11 1 P48426;P48426-2;H7BXS3 P48426 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 0 0 77.64 0.028275 18379000 24096 35297 34136 19326 36821 27901 34399 38203 24151 30689 FALSE FALSE TRUE 29456.07207 39424.67711 46764.32692 20381.73044 33154.97195 29361.85322 27049.37264 28833.65435 28997.88417 23038.79709 1.278542103 1.711229842 2.029807665 0.884669906 1.439093015 1.274452529 1.174079208 1.251526034 1.258654437 1 14.49177777 -5.263641939 24.99999797 1.207774013 1.676996858 0.502176793 0.222614677 164.2560249 1864382.451 0.061151442 0.095952027 5.45E-06 5.263641939 0.469222846 RFLVTLR ddPTM_HeLa_A486_30min_R1 1 RFLVTLR 7 1 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 106.36 0.0081853 17975000 8115.7 6586.8 8086.7 2113.3 9929.1 7216.9 7414.3 7978.5 5310.2 7332.1 FALSE FALSE TRUE 7546.83134 6064.837979 11218.08681 4919.8692 8683.699693 6326.552254 5559.16372 6161.969719 5770.492412 5496.094436 1.373126213 1.103481399 2.041101539 0.895157326 1.579976435 1.151099627 1.011475291 1.121154265 1.049925994 1 12.42419108 -6.458354074 6.301182961 1.058679069 1.389315681 0.261933297 0.282339967 0.335108413 25.93317336 0.096504975 0.08407238 3.48E-07 6.458354074 0.330636612 RFPEAEALS(ph)PEQAAHYLR ddPTM_HeLa_A485_30min_R1 4 RFPEAEALSPEQAAHYLR 18 1 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR ;;; 210.16 1.03E-25 1045210000 261760 354445 338339 262161 412862 324917 397553 479443 312806 354392 TRUE FALSE FALSE 319987.6089 395894.2595 463504.6756 276482.1916 371756.0096 341929.1517 312612.5538 361858.8525 375583.295 266048.5965 1.202741203 1.488052426 1.742180495 1.039216877 1.397323701 1.285213138 1.175020496 1.36012314 1.411709364 1 18.02133027 -5.268403327 24.99585749 1.259312537 1.47869748 0.267064349 0.179320517 772.6026287 2773120.012 0.049583021 0.075340784 5.39E-06 5.268403327 0.219384943 RFPEAEALS(ph)PEQAAHYLR ddPTM_HeLa_A486_30min_R1 4 RFPEAEALSPEQAAHYLR 18 1 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR ;;; 209.75 1.11E-25 882930000 252606 284687 271236 91088 345511 257141 286143 320323 234880 279246 TRUE FALSE FALSE 234899.6239 262127.3653 376265.8432 212057.4673 302173.7886 225417.5578 214546.9949 247392.4455 255239.5875 209320.984 1.122198164 1.252274666 1.797554339 1.013073144 1.443590522 1.076898997 1.024966493 1.181880769 1.219369328 1 17.67535742 -6.275285047 24.40593377 1.10726211 1.330498592 0.231896079 0.204580904 924.7963327 1630144.917 0.071578846 0.063463754 5.31E-07 6.275285047 0.223236482 RFPHGIPFLADYVHSLGLK ddPTM_HeLa_A485_30min_R1 1 RFPHGIPFLADYVHSLGLK 19 1 P17050 P17050 NAGA Alpha-N-acetylgalactosaminidase 0 0 85.808 0.00073633 15043000 21532 22881 18062 22196 22893 26829 36712 49853 15120 29945 FALSE FALSE TRUE 26321.71912 25556.73391 24743.88542 23408.51128 20613.69254 28233.72495 28868.18129 37626.47358 18154.44531 22480.2626 1.170881301 1.136852108 1.100693789 1.041291719 0.916968494 1.255933948 1.284156765 1.673755964 0.807572653 1 14.45637127 -6.312823646 23.81718095 1.251385869 1.07660546 0.062051265 0.218971464 437.057798 202579.3777 0.074847871 0.066009729 4.87E-07 6.312823646 -0.174780409 RFPHGIPFLADYVHSLGLK ddPTM_HeLa_A486_30min_R1 2 RFPHGIPFLADYVHSLGLK 19 1 P17050 P17050 NAGA Alpha-N-acetylgalactosaminidase 0 0 ; ; 124.26 5.84E-07 22091000 35665 49157 39446 26258 67781 53700 72872 62120 50251 70643 FALSE FALSE TRUE 33165.06767 45261.62029 54720.5476 61129.95101 59279.27495 47075.03998 54638.65484 47976.63207 54606.79714 52953.53299 0.626305098 0.854742219 1.033369154 1.154407413 1.119458355 0.888987709 1.031822652 0.906013808 1.031221036 1 15.69243932 -4.428723726 2.476607442 1.021005583 0.603493185 0.714799815 0.077502135 0.215143256 2.077896275 0.022270816 0.161097511 3.73E-05 4.428723726 -0.417512398 RFPTDYASTS(ph)EDEFGSNR ddPTM_HeLa_A485_30min_R1 2 RFPTDYASTSEDEFGSNR 18 1 H0Y2V6;Q5SW79;Q5SW79-3 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 RFPTDYAS(0.003)T(0.139)S(0.858)EDEFGSNR;RFPTDYAS(0.009)T(0.286)S(0.705)EDEFGSNR ; 169.56 1.72E-12 408330000 164542 212492 218386 168025 266761 218368 249169 266397 201899 234628 TRUE FALSE FALSE 201143.8002 237341.091 299176.0692 177203.7803 240201.3382 229801.4108 195932.0076 201062.7181 242418.2774 176139.5576 1.141956997 1.347460469 1.698517206 1.006041929 1.363698998 1.30465532 1.112368001 1.141496668 1.376285263 1 17.42635942 -12.61482336 0.130553404 0.351380439 1.411295734 0.173857273 0.183352191 160.8296003 1.879629207 29.61091466 1.506120382 2.43E-13 12.61482336 1.059915295 RFPTDYASTS(ph)EDEFGSNR ddPTM_HeLa_A486_30min_R1 1 RFPTDYASTSEDEFGSNR 18 1 H0Y2V6;Q5SW79;Q5SW79-3 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 RFPTDYAST(0.015)S(0.985)EDEFGSNR 130.49 4.91E-06 242080000 61922 69059 50564 16279 75250 53559 63153 65859 50845 53889 TRUE FALSE FALSE 57581.58757 63586.51333 70143.73495 37898.3347 65811.44332 46951.43513 47351.45144 50864.34339 55252.28554 40394.84364 1.425468757 1.574124507 1.736452691 0.938197336 1.629204061 1.162312585 1.172215243 1.259179113 1.367805407 1 15.30188353 -1.000000006 0.103918847 0.87188676 2.934990116 0.295911551 0.213135377 149.4266133 1.096427732 2.351840128 44.03587324 0.099999999 1.000000006 2.063103356 RFS(ph)DFLGLHSK ddPTM_HeLa_A485_30min_R1 1 RFSDFLGLHSK 11 1 O60749;D6RC15;O60749-2 O60749 SNX2 Sorting nexin-2 1 0 RFS(1)DFLGLHSK 112.36 0.00027767 188540000 148880 160160 135980 161000 197050 165800 210370 228320 122260 231430 TRUE FALSE FALSE 181997.8424 178889.3188 186284.6606 169795.0223 177431.0101 174481.0316 165422.7309 172324.162 146796.4606 173738.7602 1.047537361 1.029645421 1.072211293 0.97730076 1.021251734 1.004272342 0.952134865 0.991857901 0.844926374 1 17.40656012 -6.516022911 0.848814786 0.935603158 1.040436041 0.44097939 0.044483307 0.554569507 0.828366024 0.030653926 0.022411029 3.05E-07 6.516022911 0.104832883 RFS(ph)DFLGLYEK ddPTM_HeLa_A485_30min_R1 2 RFSDFLGLYEK 11 1 Q13596-2;Q13596;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 1 0 RFS(1)DFLGLYEK;RFS(1)DFLGLYEK ; 159.18 7.21E-08 474510000 856050 868440 744900 966510 1130990 902790 1154690 1258310 876650 1235360 TRUE FALSE FALSE 1046475.369 969996.5036 1020469.508 1019307.994 1018384.664 950058.6884 907981.0486 949707.4995 1052585.614 927407.4871 1.128387881 1.045922658 1.10034642 1.099093988 1.098098386 1.024424217 0.979052963 1.024045538 1.134976403 1 19.82284385 -6.261206004 24.90247272 1.03066224 1.092272838 0.344112536 0.042621723 24.34895972 2598276.483 0.014714175 0.013867588 5.48E-07 6.261206004 0.061610598 RFS(ph)DFLGLYEK ddPTM_HeLa_A486_30min_R1 2 RFSDFLGLYEK 11 1 Q13596-2;Q13596;Q13596-3 Q13596-2 SNX1 Sorting nexin-1 1 0 RFS(1)DFLGLYEK;RFS(1)DFLGLYEK ; 208.82 3.09E-15 994630000 973440 1036100 669740 408820 1089940 1041830 1182100 1202440 824290 1088300 TRUE FALSE FALSE 905206.8828 953995.6626 929081.2643 951753.6206 953229.5619 913299.6072 886326.077 928670.6611 895740.1209 815782.5964 1.109617791 1.169423897 1.138883409 1.166675564 1.168484798 1.119537989 1.086473383 1.138380085 1.098013276 1 19.6378252 -8.934244191 0.386680272 0.976431707 1.152562356 0.755921407 0.024091852 2.052048516 0.438323598 0.102327962 0.018764681 1.16E-09 8.934244191 0.176130649 RFS(ph)DQAGPAIPTSNSYSK ddPTM_HeLa_A485_30min_R1 1 RFSDQAGPAIPTSNSYSK 18 1 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 RFS(1)DQAGPAIPTSNSYSK 150.59 1.85E-08 126350000 250680 238360 175140 239680 286890 231670 292390 289050 210730 286110 TRUE FALSE FALSE 306442.9012 266234.1285 239931.5742 252773.1115 258326.2243 243799.883 229918.4879 218160.0343 253021.5781 214788.0425 1.426722352 1.239520252 1.117062065 1.176849086 1.202703006 1.135071954 1.070443612 1.01569916 1.178005885 1 17.71255415 -1 0.493543822 1.086187755 10.95059743 0.727979492 0.06097081 57.5905141 0.624248136 0.035182762 586.9255727 0.1 1 9.864409675 RFS(ph)DQAGPAIPTSNSYSK ddPTM_HeLa_A486_30min_R1 1 RFSDQAGPAIPTSNSYSK 18 1 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 RFS(1)DQAGPAIPTSNSYSK 65.753 0.0065494 160170000 93504 120520 66727 52125 123000 107750 119030 118260 80273 104420 TRUE FALSE FALSE 86949.85246 110969.5563 92565.48141 121349.6343 107572.1931 94456.90052 89247.43503 91334.7796 87231.12827 78272.55234 1.110860063 1.417732691 1.182604612 1.550347224 1.374328419 1.206769138 1.140213681 1.166881325 1.114453607 1 16.25621887 -6.511264589 2.983058821 1.119367692 1.335606688 0.425361162 0.12077637 0.267130646 4.841919606 0.047986976 0.038343076 3.08E-07 6.511264589 0.216238995 RFS(ph)DS(ph)EGEETVPEPR ddPTM_HeLa_A485_30min_R1 1 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 2 0 RFS(1)DS(1)EGEETVPEPR 160.43 2.99E-08 0 113630 123170 116660 119340 129860 115030 162150 139170 114920 216500 TRUE FALSE FALSE 138906.6015 137573.6601 159817.3886 125859.242 116930.6824 121052.7929 127505.3279 105038.3393 137983.3899 162530.5344 0.854649263 0.846448088 0.983306855 0.774372905 0.719438245 0.744800313 0.784500761 0.646268344 0.848969029 1 17.31035126 -5.374392994 9.251968998 0.768332019 0.889806808 0.188613632 0.094944744 0.457572374 34.43113651 0.025168865 0.037352018 4.22E-06 5.374392994 0.121474789 RFS(ph)DSEER ddPTM_HeLa_A485_30min_R1 1 RFSDSEER 8 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 RFS(0.975)DS(0.025)EER 199.8 1.16E-06 809530000 213500 307950 265490 214950 303370 274660 299850 307940 247250 251760 TRUE FALSE FALSE 260992.3384 343962.0737 363705.799 226692.1742 273165.4176 289040.7729 235784.598 232417.2322 296870.8071 189000.8653 1.380905521 1.81989682 1.924360496 1.199424002 1.445313053 1.529309257 1.247531844 1.229715175 1.57073782 1 17.52803331 -6.47564364 0.056644106 7.41E-10 2.877184628 0.364336488 0.216881659 66.45177832 1.789954749 39.19460668 50.13124707 3.34E-07 6.47564364 2.877184627 RFS(ph)DSEER ddPTM_HeLa_A486_30min_R1 1 RFSDSEER 8 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 RFS(0.976)DS(0.024)EER 137.01 0.00027318 125690000 116710 129590 105370 34943 138440 101370 101400 121760 101760 124320 TRUE FALSE FALSE 108529.2317 119320.8164 146172.0859 81349.06992 121075.5643 88864.00005 76028.6475 94037.906 110580.6387 93189.46281 1.164608405 1.280411034 1.56854736 0.872942793 1.29924093 0.953584208 0.81585026 1.009104497 1.186621699 1 16.50787921 -5.271645779 24.98474948 1.020408879 1.332111152 0.44924142 0.161433133 636.897665 1559091.983 0.046337554 0.069596611 5.35E-06 5.271645779 0.311702273 RFS(ph)DSEGEETVPEPR ddPTM_HeLa_A485_30min_R1 1 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 0 RFS(0.793)DS(0.207)EGEETVPEPR 146.15 1.06E-06 0 162810 184310 157220 159190 179450 158170 199380 209850 164260 230960 TRUE FALSE FALSE 199026.5228 205863.4512 215382.2205 167886.1466 161583.3279 166451.5366 156780.8342 158383.9585 197225.4753 173385.9225 1.147881673 1.187313527 1.242212847 0.968280147 0.931928761 0.960006062 0.90423047 0.913476459 1.137494166 1 17.40362724 -5.270020327 24.3983069 0.964828734 1.191953768 0.699517623 0.06554923 229.6504355 652967.5232 0.018381663 0.027784596 5.37E-06 5.270020327 0.227125034 RFS(ph)EGVLQSPSQDQEK ddPTM_HeLa_A485_30min_R1 3 RFSEGVLQSPSQDQEK 16 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK ;; 222.51 4.57E-34 1011300000 1039580 941960 787330 1219970 1063220 836930 1259370 1228950 655090 1393970 TRUE FALSE FALSE 1270830.984 1052114.028 1078596.131 1286613.872 957362.0836 880750.3607 990295.3114 927548.0856 786560.5542 1046478.933 1.214387547 1.005384814 1.030690725 1.229469444 0.914841239 0.841632194 0.946311751 0.886351417 0.751625789 1 19.99711184 -5.88603721 7.080324254 0.881686485 1.104674125 0.612897583 0.089341178 0.154560103 9.008523607 0.027322573 0.031070946 1.30E-06 5.88603721 0.22298764 RFS(ph)EGVLQSPSQDQEK ddPTM_HeLa_A486_30min_R1 2 RFSEGVLQSPSQDQEK 16 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK ; 245.63 6.08E-42 421601000 488113 480025 286212 226075 468597 525530 613840 600930 398576 566081 TRUE FALSE FALSE 453898.7993 441986.0708 397040.9514 526314.0252 409821.1948 460695.4518 460250.7395 464111.3572 433124.8886 424330.633 1.069681904 1.041607738 0.935687694 1.240339453 0.965806291 1.085699254 1.084651222 1.093749357 1.020725008 1 18.69482931 RFS(ph)FCCSPEPEAEAEAAAGPGPCER ddPTM_HeLa_A485_30min_R1 4 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 1 0 RFS(1)FCCSPEPEAEAEAAAGPGPCER;RFS(0.999)FCCS(0.001)PEPEAEAEAAAGPGPCER;RFS(0.999)FCCS(0.001)PEPEAEAEAAAGPGPCER;RFS(1)FCCSPEPEAEAEAAAGPGPCER ;;; 255.62 1.15E-61 3810210000 583370 543870 704340 675480 942580 615220 783100 762380 669000 793380 TRUE FALSE FALSE 713138.6439 607470.8655 964904.676 712379.762 848733.4256 647431.9679 615784.2877 575405.1096 803262.1636 595604.9671 1.197334951 1.01992243 1.620041352 1.196060814 1.424993868 1.08701573 1.033880377 0.966085143 1.348649202 1 19.18399626 -6.316064577 13.15966239 1.081626396 1.289492633 0.251280409 0.176390489 3.061684255 735.8367736 0.061628547 0.054354931 4.83E-07 6.316064577 0.207866237 RFS(ph)FCCSPEPEAEAEAAAGPGPCER ddPTM_HeLa_A486_30min_R1 4 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 1 0 RFS(0.985)FCCS(0.015)PEPEAEAEAAAGPGPCER;RFS(1)FCCSPEPEAEAEAAAGPGPCER;RFS(0.989)FCCS(0.011)PEPEAEAEAAAGPGPCER;RFS(0.992)FCCS(0.008)PEPEAEAEAAAGPGPCER ;;; 282.06 1.10E-75 3126400000 565431 984480 866310 326744 1121000 878420 937640 991580 758380 809020 TRUE FALSE FALSE 525797.2068 906466.2194 1201768.433 760676.5447 980393.7271 770049.4715 703032.5547 765818.88 824116.989 606436.1262 0.867028173 1.494743107 1.981690042 1.2543391 1.616647961 1.269794853 1.159285412 1.262818699 1.358951015 1 19.20999617 -6.437354822 6.771511095 1.2166906 1.464603244 0.150456701 0.276661593 0.504348252 33.8359653 0.099618819 0.087347227 3.65E-07 6.437354822 0.247912644 RFS(ph)FFK ddPTM_HeLa_A485_30min_R1 2 RFSFFK 6 1 A4QPE4;O15020 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 RFS(1)FFK;RFS(1)FFK ; 122.19 0.0034623 363960000 446200 262627 287230 480090 340390 241720 346510 294110 329610 636120 TRUE FALSE FALSE 545455.6506 293338.9431 393488.3296 506316.101 306499.5764 254376.0854 272475.3078 221979.0614 395759.7036 477546.9909 1.142203094 0.614261944 0.823978241 1.060243517 0.641820768 0.532672366 0.570572767 0.464831871 0.828734577 1 18.86528318 -4.253370292 24.10084693 0.709545864 1.142203453 0.299084946 0.189420591 794.4457386 2372768.57 0.049455998 0.519516365 5.58E-05 4.253370292 0.432657589 RFS(ph)FFK ddPTM_HeLa_A486_30min_R1 2 RFSFFK 6 1 A4QPE4;O15020 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 RFS(1)FFK;RFS(1)FFK ; 146.23 0.0023299 495110000 563990 680830 344160 233445 380100 641810 655360 761950 457880 448770 TRUE FALSE FALSE 524457.2134 626878.5513 477427.9689 543471.7577 332424.3137 562630.0076 491381.9963 588470.6183 497569.4071 336395.071 1.559051421 1.863518836 1.419247813 1.615575865 0.988196149 1.672527502 1.460728883 1.74934376 1.479122169 1 18.35979704 -4.778822619 24.97259624 1.451449909 1.711285154 0.166901959 0.251237648 384.4796924 552340.5664 0.063560089 0.132799796 1.66E-05 4.778822619 0.259835244 RFS(ph)FFKK ddPTM_HeLa_A485_30min_R1 2 RFSFFKK 7 2 A4QPE4;O15020 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 RFS(1)FFKK;RFS(1)FFKK ; 73.781 0.012709 1450650000 1291650 917350 682270 1063580 1029330 931860 1507980 1764010 886190 1434820 TRUE FALSE FALSE 1578973.086 1024626.103 934670.0646 1121680.682 926846.291 980650.7487 1185787.754 1331383.782 1064040.204 1077145.78 1.465886156 0.951241811 0.867728475 1.041345288 0.860465044 0.910415997 1.100860975 1.236029335 0.987833053 1 20.03878209 -9.764157397 14.17640601 1.000000065 1.036279568 0.003079157 0.177030661 0 0 0.173207175 0.04200891 1.72E-10 9.764157397 0.036279503 RFS(ph)FFKK ddPTM_HeLa_A486_30min_R1 2 RFSFFKK 7 2 A4QPE4;O15020 A4QPE4 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 1 0 RFS(1)FFKK;RFS(1)FFKK ; 75.387 0.011752 1455850000 2236870 2078820 937900 1074670 1487030 1975520 2685500 3126100 1411730 1954400 TRUE FALSE FALSE 2080076.964 1914086.732 1301079.998 2501886.071 1300512.831 1731800.428 2013559.496 2414355.272 1534099.893 1465005.519 1.419842408 1.306538923 0.888105868 1.707765628 0.887718725 1.18211188 1.374438164 1.648017868 1.047163218 1 20.48247467 -6.758008945 24.95497106 1.321406299 1.225744522 0 0.281906008 432.659797 3147452.269 0.107320649 0.0796931 1.75E-07 6.758008945 -0.095661777 RFS(ph)FKK ddPTM_HeLa_A486_30min_R1 1 RFSFKK 6 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 RFS(1)FKK 64.836 0.015444 195940000 44943 49474 20288 22382 37371 54590 61630 72164 37107 62850 TRUE FALSE FALSE 41792.72779 45553.50006 28144.05693 52106.42712 32683.58071 47855.24083 46209.52214 55733.83253 40323.46464 47111.95092 0.887093975 0.966920265 0.597386786 1.106012935 0.693742884 1.015777099 0.980845014 1.183008376 0.855907341 1 15.52380546 -6.439335795 24.99631466 1.017066454 0.856664967 0.213446763 0.149712252 133.9469871 40075.60107 0.049600203 0.043743258 3.64E-07 6.439335795 -0.160401487 RFS(ph)FSQR ddPTM_HeLa_A485_30min_R1 7 RFSFSQR 7 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR ;;;;;; 160.33 0.00017155 7470180000 590731 828901 813073 559990 900553 709105 865999 977080 724235 712943 TRUE FALSE FALSE 722137.073 925833.7615 1113862.537 590580.8357 810890.7813 746232.6413 680971.2391 737449.598 869582.3214 535219.4308 1.349235531 1.729820907 2.081132473 1.103436837 1.515062299 1.394255511 1.272321593 1.377845339 1.624721136 1 19.02977097 -5.272362002 24.98332857 1.350933881 1.721038783 0.362869171 0.237291013 781.3868072 1787265.848 0.065588168 0.098345147 5.34E-06 5.272362002 0.370104903 RFS(ph)FSQR ddPTM_HeLa_A486_30min_R1 7 RFSFSQR 7 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(1)FSQR;RFS(0.888)FS(0.112)QR;RFS(1)FSQR ;;;;;; 151.83 0.00047906 6849710000 1530645 1798282 1647093 598431 2011560 1478751 1789843 1828903 1279381 1445983 TRUE FALSE FALSE 1423354.69 1655779.585 2284891.52 1393177.611 1759251.388 1296317.736 1342005.35 1412501.712 1390278.775 1083899.445 1.313179646 1.527613648 2.108029053 1.28533843 1.623076196 1.195976013 1.238127168 1.303166745 1.282663979 1 20.04779949 -6.262516852 24.90747286 1.225068465 1.582927343 0.399625088 0.224235509 102.6364492 2372582.344 0.077353559 0.072096308 5.46E-07 6.262516852 0.357858878 RFS(ph)ISFAR ddPTM_HeLa_A486_30min_R1 1 RFSISFAR 8 1 A0A087WZV0;O43314;K7ENU7 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 RFS(1)ISFAR 119.27 0.00047408 397470000 50050 63348 61160 24313 72535 56977 65943 61607 48018 43856 TRUE FALSE FALSE 46541.75346 58328.07377 84842.78992 56601.89271 63436.98394 49947.75704 49443.36393 47580.43097 52180.2389 32874.17215 1.415754388 1.774282665 2.580834265 1.721773934 1.92969069 1.519361668 1.504018526 1.447349937 1.587271572 1 15.00466694 -6.37623949 1.926458549 1.410989751 1.919374524 0.367023845 0.310791594 0.407932007 2.988621088 0.135765383 0.114789213 4.20E-07 6.37623949 0.508384773 RFS(ph)LDER ddPTM_HeLa_A485_30min_R1 4 RFSLDER 7 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 RFS(1)LDER;RFS(1)LDER;RFS(1)LDER;RFS(1)LDER ;;; 139.43 0.00089977 824440000 596877 764807 815774 621449 991010 725223 868990 914490 677181 723142 TRUE FALSE FALSE 729650.2294 854244.5257 1117562.75 655397.1853 892341.5648 763194.5549 683323.1875 690209.8936 813085.0152 542876.0078 1.344045821 1.573553654 2.058596684 1.20726865 1.643729971 1.405835852 1.258709498 1.271395095 1.497736138 1 19.0502632 -7.923530894 0.276498919 0.932975598 1.660446229 0.327793815 0.226446882 2.554671834 0.652030868 0.685734374 0.436525013 1.19E-08 7.923530894 0.727470632 RFS(ph)LDER ddPTM_HeLa_A486_30min_R1 3 RFSLDER 7 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 RFS(1)LDER;RFS(1)LDER;RFS(1)LDER ;; 141.91 0.00086236 670810000 740306 839147 790761 299539 1060639 802643 906220 958539 713921 844842 TRUE FALSE FALSE 688414.3723 772649.9356 1096964.837 697341.9299 927603.7666 703621.0673 679474.171 740300.5945 775804.2471 633288.0642 1.087047761 1.22006079 1.732173553 1.101144912 1.464742222 1.111060049 1.072930645 1.168979231 1.225041637 1 19.27250236 -6.288286889 23.63083483 1.123496473 1.326049282 0.239596119 0.182606952 588.6369216 518108.0896 0.064051189 0.056508761 5.15E-07 6.288286889 0.202552809 RFS(ph)LFGK ddPTM_HeLa_A485_30min_R1 2 RFSLFGK 7 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RFS(1)LFGK;RFS(1)LFGK ; 134.84 0.00094248 995330000 1213830 1023190 826960 820680 1166860 795060 1517370 1611530 983970 1297000 TRUE FALSE FALSE 1483842.296 1142843.17 1132886.917 865511.6703 1050683.321 836688.1122 1193171.504 1216299.741 1181443.753 973681.7695 1.523949962 1.173733766 1.163508399 0.888906106 1.079082873 0.859303459 1.225422454 1.249175838 1.213377708 1 19.8930908 -4.16508698 1.857819115 1.082694598 1.741665823 0.513329239 0.128407756 0.990680592 2.890388991 0.037347612 1.227689074 6.84E-05 4.16508698 0.658971225 RFS(ph)LFGK ddPTM_HeLa_A486_30min_R1 2 RFSLFGK 7 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RFS(1)LFGK;RFS(1)LFGK ; 123.96 0.0010438 1164280000 1137750 1335880 722230 603330 970580 1190560 1606820 1920390 821830 936910 TRUE FALSE FALSE 1057999.6 1230020.004 1001896.798 1404582.731 848840.8061 1043680.812 1204776.641 1483159.119 893066.8861 702301.6377 1.506474631 1.751412694 1.426590434 1.999970746 1.208655598 1.486086257 1.715468933 2.111854849 1.271628654 1 19.42173127 -7.994541477 24.98593825 0.999999897 1.643475378 0.41749657 0.253564523 102.9069719 471045.1537 0.241626353 0.062387656 1.01E-08 7.994541477 0.643475482 RFS(ph)LS(ph)PSLGPQASR ddPTM_HeLa_A485_30min_R1 1 RFSLSPSLGPQASR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 RFS(1)LS(0.993)PS(0.007)LGPQASR 80.362 0.0021126 223570000 153870 181080 170510 158940 221350 195550 238220 262860 187150 237360 TRUE FALSE FALSE 188097.8507 202255.7308 233588.7445 167622.4897 199311.6168 205788.6956 187322.3509 198393.1729 224709.2884 178190.5203 1.055599649 1.135053259 1.310893218 0.940692521 1.118530977 1.154880155 1.051247567 1.113376697 1.261061969 1 17.44306106 -5.25578164 24.9900047 1.098225212 1.163969139 0.103652989 0.100601141 1277.876267 5644313.881 0.0274147 0.045968004 5.55E-06 5.25578164 0.065743927 RFS(ph)LS(ph)PSLGPQASR ddPTM_HeLa_A486_30min_R1 3 RFSLSPSLGPQASR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 RFS(1)LS(0.947)PS(0.054)LGPQASR;RFS(1)LS(0.924)PS(0.076)LGPQASR;RFS(1)LS(0.945)PS(0.055)LGPQASR ;; 79.695 0.0022762 292190000 297513 337028 343495 150707 423260 322707 389109 382398 320845 370319 TRUE FALSE FALSE 276658.8751 310320.6738 476505.4631 350853.5123 370170.7841 282894.6914 291749.8126 295334.3231 348656.1029 277588.712 0.996650307 1.11791532 1.71658804 1.263932923 1.333522467 1.019114536 1.051014685 1.063927711 1.256016862 1 18.08258938 -6.257132659 24.83786504 1.080322734 1.299125754 0.237544315 0.185261823 530.5619652 3059880.051 0.065397704 0.063188091 5.53E-07 6.257132659 0.218803021 RFS(ph)LSPS(ph)LGPQASR ddPTM_HeLa_A485_30min_R1 1 RFSLSPSLGPQASR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 RFS(0.987)LS(0.391)PS(0.623)LGPQASR 113.81 9.75E-05 139050000 223610 275220 271450 243270 330070 275100 298640 317720 248500 318980 TRUE FALSE FALSE 273351.2731 307404.5849 371870.651 256559.2241 297207.0719 289503.8106 234833.1243 239798.6718 298371.6706 239464.1564 1.141512271 1.283718572 1.55292824 1.071388837 1.241133856 1.208965112 0.980660855 1.001396933 1.245997209 1 17.8694502 -6.188793405 1.181019336 1.062269976 1.294832374 0.306920582 0.138196084 0.579077009 1.671987007 0.069615929 0.067012646 6.47E-07 6.188793405 0.232562398 RFS(ph)LSPS(ph)LGPQASR ddPTM_HeLa_A486_30min_R1 1 RFSLSPSLGPQASR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 RFS(0.572)LS(0.528)PS(0.9)LGPQASR 62.525 0.011134 148760000 127060 130200 94223 56945 154660 117980 126200 124280 93030 118470 TRUE FALSE FALSE 118153.7501 119882.4778 130708.669 132570.8378 135261.1007 103424.8271 94623.42519 95984.15701 101093.9153 88804.34089 1.33049521 1.349961912 1.47187252 1.492841865 1.523136136 1.164637067 1.065527025 1.080849833 1.138389343 1 16.43834258 -6.398762451 4.409793288 1.082050754 1.433392102 0.877551499 0.064786024 0.084640094 2.654178786 0.025878028 0.022496917 3.99E-07 6.398762451 0.351341348 RFS(ph)LSVPR ddPTM_HeLa_A485_30min_R1 3 RFSLSVPR 8 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6R9X1 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RFS(1)LSVPR;RFS(1)LSVPR;RFS(1)LSVPR ;; 153.1 0.00010471 491170000 149876 183425 190360 142391 223361 167329 198145 217510 161760 169277 TRUE FALSE FALSE 183215.3991 204874.9582 260782.0855 150169.4598 201122.3946 176090.0877 155809.7021 164165.3315 194223.7482 127079.3592 1.44174003 1.612181234 2.052119928 1.181698277 1.582651941 1.385670252 1.226081899 1.29183317 1.528365814 1 16.95537019 -5.803254401 1.160666268 1.296611414 1.658988458 0.296373536 0.231632601 0.630473396 1.801059802 0.098122431 0.138394015 1.57E-06 5.803254401 0.362377044 RFS(ph)LSVPR ddPTM_HeLa_A486_30min_R1 2 RFSLSVPR 8 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6R9X1 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RFS(1)LSVPR;RFS(1)LSVPR ; 149.33 4.03E-06 248610000 128878 158868 124445 46841 151189 128646 145067 162010 121748 114541 TRUE FALSE FALSE 119844.3177 146278.7211 172633.4368 109048.2152 132225.4658 112774.9645 108769.7022 125123.8597 132301.2147 85859.18806 1.395824028 1.70370492 2.01065769 1.270082069 1.540026977 1.313487433 1.266838235 1.457314732 1.540909222 1 16.38968491 -5.287098715 24.99101964 1.36431846 1.703426567 0.396581662 0.203325151 767.1334365 747151.1731 0.05639605 0.083681621 5.16E-06 5.287098715 0.339108107 RFS(ph)PPSSSLQPGK ddPTM_HeLa_A485_30min_R1 2 RFSPPSSSLQPGK 13 1 I3L354;A0A2R8Y7Z3;A0A0D9SEN7;I3L0L0;Q13950-3;Q13950-2;Q13950 I3L354 RUNX2 Runt-related transcription factor 2 1 0 RFS(0.991)PPS(0.006)S(0.001)S(0.001)LQPGK;RFS(0.999)PPS(0.001)SSLQPGK ; 99.451 0.00041593 232220000 416550 566900 515350 342940 588890 515830 584850 578200 409730 463620 TRUE FALSE FALSE 509210.1104 633194.0236 705999.4105 361673.9438 530258.0439 542838.0612 459892.0197 436395.5434 491959.0527 348048.0663 1.463045366 1.819271776 2.028453765 1.039149413 1.52351958 1.559664063 1.321346286 1.253837 1.413480207 1 18.40892703 -6.079788607 0.137835315 0.770654749 2.200914962 0.377043113 0.238829219 14.30352322 0.770723551 2.36948738 5.212113275 8.32E-07 6.079788607 1.430260213 RFS(ph)PSQVPIQTR ddPTM_HeLa_A485_30min_R1 4 RFSPSQVPIQTR 12 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 RFS(0.904)PS(0.096)QVPIQTR;RFS(0.937)PS(0.063)QVPIQTR;RFS(0.996)PS(0.004)QVPIQTR;RFS(0.969)PS(0.031)QVPIQTR ;;; 162.59 1.66E-10 4078040000 1053030 1440560 1424560 1135920 1585750 1303810 1540350 1715490 1273180 1444320 TRUE FALSE FALSE 1287272.891 1609020.961 1951564.025 1197972.433 1427867.162 1372075.476 1211241.639 1294763.388 1528695.548 1084277.605 1.187217079 1.483956649 1.799874881 1.104857675 1.316883385 1.265428216 1.117095506 1.194125362 1.409874686 1 20.04830274 -5.293698354 24.9957628 1.213263617 1.48971049 0.362735926 0.175128339 706.1953561 547191.7952 0.04910627 0.072842402 5.09E-06 5.293698354 0.276446873 RFS(ph)PSQVPIQTR ddPTM_HeLa_A486_30min_R1 4 RFSPSQVPIQTR 12 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 RFS(0.993)PS(0.007)QVPIQTR;RFS(0.985)PS(0.015)QVPIQTR;RFS(0.918)PS(0.082)QVPIQTR;RFS(0.951)PS(0.049)QVPIQTR ;;; 172.57 6.17E-11 3809420000 1313660 1495540 1372340 452569 1628200 1235650 1369450 1454400 1190150 1310490 TRUE FALSE FALSE 1221579.218 1377027.964 1903746.801 1053603.504 1423975.974 1083208.066 1026799.125 1123264.869 1293313.16 982334.7741 1.243546752 1.401790917 1.937981685 1.072550348 1.449583188 1.102687286 1.045263949 1.143464427 1.316570679 1 19.90585525 -5.83619277 1.507437166 1.133478117 1.485267416 0.303669612 0.221575997 0.488663957 2.307550566 0.084621429 0.108464269 1.46E-06 5.83619277 0.351789299 RFS(ph)S(ph)GGEEDDFDR ddPTM_HeLa_A485_30min_R1 2 RFSSGGEEDDFDR 13 1 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 2 0 RFS(1)S(1)GGEEDDFDR;RFS(1)S(1)GGEEDDFDR ; 80.488 0.00097171 0 180907 239208 179748 182906 246257 230068 282920 243010 179714 259500 TRUE FALSE FALSE 221149.138 267181.2948 246244.2651 192897.6916 221738.7884 242114.0047 222471.8308 183411.4165 215780.9514 194811.4257 1.135195932 1.371486779 1.264013464 0.990176479 1.138222707 1.242812139 1.141985538 0.941481824 1.107640122 1 17.57171877 -6.034380619 0.317100328 0.987341787 1.310217631 0.324258096 0.104505542 3.017223819 0.56956813 0.141119832 0.352286567 9.24E-07 6.034380619 0.322875844 RFS(ph)S(ph)GGEEDDFDR ddPTM_HeLa_A486_30min_R1 1 RFSSGGEEDDFDR 13 1 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 2 0 RFS(1)S(1)GGEEDDFDR 83.54 0.00076133 0 99707 104560 90661 38651 118330 102490 117540 126050 82582 131980 TRUE FALSE FALSE 92718.05419 96274.2848 125767.3672 89981.48131 103487.948 89845.82584 88130.24879 97351.16665 89740.27425 98931.34895 0.937195896 0.973142344 1.271258994 0.909534564 1.046058192 0.908163356 0.890822269 0.984027487 0.907096438 1 16.59414013 -5.935270499 1.814510352 0.936834559 1.042878006 0.150250858 0.098772261 0.625872301 4.204463 0.036761693 0.042485347 1.16E-06 5.935270499 0.106043447 RFS(ph)SGGEEDDFDR ddPTM_HeLa_A485_30min_R1 2 RFSSGGEEDDFDR 13 1 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 RFS(0.906)S(0.094)GGEEDDFDR;RFS(0.983)S(0.017)GGEEDDFDR ; 137.05 4.91E-06 1016340000 368990 443870 445830 380800 532430 435760 611540 562450 412330 544560 TRUE FALSE FALSE 451070.5525 495776.7353 610761.0695 401602.1398 479419.3997 458575.7198 480879.4832 424508.2556 495080.8489 408811.2139 1.10337128 1.212727828 1.493992945 0.982365762 1.172715873 1.121729797 1.176287408 1.038396798 1.211025608 1 18.64107525 -5.289203217 24.99934875 1.109028915 1.264300564 0.309663192 0.115490588 911.051421 820334.4699 0.031917199 0.047351815 5.14E-06 5.289203217 0.155271648 RFS(ph)SGGEEDDFDR ddPTM_HeLa_A486_30min_R1 2 RFSSGGEEDDFDR 13 1 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 RFS(0.936)S(0.064)GGEEDDFDR;RFS(0.961)S(0.039)GGEEDDFDR ; 125.51 1.77E-05 1076230000 357724 409990 330319 176173 523070 561820 619280 565630 438190 617200 TRUE FALSE FALSE 332649.3949 377500.8992 458227.363 410139.6473 457461.6832 492508.3606 464329.5939 436848.3966 476172.662 462649.1027 0.719010137 0.815955109 0.990442563 0.886502632 0.988787572 1.064539751 1.003632324 0.944232668 1.029230705 1 18.81955887 -3.908629561 0.756096793 1.002562182 0.368803417 0.798241708 0.045579734 1.863698377 0.565622846 0.018050053 1.128102997 0.000123416 3.908629561 -0.633758765 RFS(ph)SSDFSDLSNGEELQETCSSSLR ddPTM_HeLa_A485_30min_R1 3 RFSSSDFSDLSNGEELQETCSSSLR 25 1 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RFS(0.387)S(0.157)S(0.268)DFS(0.188)DLSNGEELQETCSSSLR;RFS(0.716)S(0.088)S(0.193)DFS(0.004)DLSNGEELQETCSSSLR;RFS(0.633)S(0.134)S(0.21)DFS(0.023)DLSNGEELQETCSSSLR ;; 233.08 1.69E-39 1010700000 180276 172325 221149 200457 318950 228717 285241 301752 269336 315228 TRUE FALSE FALSE 220377.7743 192476.9097 302961.2179 211407.4583 287194.2181 240692.2685 224296.9301 227746.8489 323389.2647 236647.4609 0.931249266 0.813348721 1.280221713 0.893343446 1.213595181 1.017092123 0.947810423 0.962388728 1.366544409 1 17.85237992 -4.729282052 24.99996992 1.074186523 0.87229882 0.24179785 0.149748506 278.2867127 216343.7208 0.036231419 0.095842688 1.87E-05 4.729282052 -0.201887703 RFS(ph)SSDFSDLSNGEELQETCSSSLR ddPTM_HeLa_A486_30min_R1 3 RFSSSDFSDLSNGEELQETCSSSLR 25 1 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RFS(0.691)S(0.205)S(0.096)DFS(0.009)DLSNGEELQETCSSSLR;RFS(0.992)S(0.006)S(0.002)DFSDLSNGEELQETCSSSLR;RFS(0.8)S(0.187)S(0.01)DFS(0.002)DLSNGEELQETCSSSLR ;; 299.52 6.66E-90 1004470000 166755 191834 194573 77549 266526 218992 239140 249782 200541 157720 TRUE FALSE FALSE 155066.3356 176632.3752 269916.8764 180537.9911 233095.8238 191974.9936 179304.6426 192912.0913 217924.0553 118225.8854 1.311610694 1.494024549 2.283060732 1.527059751 1.97161411 1.623798316 1.516627615 1.631724648 1.843285458 1 16.85118642 -6.514596043 23.0268183 1.553361598 1.733083342 0.083002643 0.321614852 440.0350213 1223363.276 0.117865479 0.095996466 3.06E-07 6.514596043 0.179721744 RFS(ph)SSDFSDLSNGEELQETCSSSLRR ddPTM_HeLa_A485_30min_R1 2 RFSSSDFSDLSNGEELQETCSSSLRR 26 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RFS(0.968)S(0.029)S(0.003)DFSDLSNGEELQETCSSSLRR;RFS(0.939)S(0.051)S(0.01)DFSDLSNGEELQETCSSSLRR ; 207.23 7.49E-29 478930000 71278 127580 112829 65719 113608 118530 138515 163948 106487 88322 TRUE FALSE FALSE 87133.54519 142499.3712 154569.1423 69309.06256 102296.7886 124736.0475 108920.1387 123739.4959 127857.9641 66304.95085 1.31413332 2.149151298 2.331185535 1.045307502 1.54282278 1.88124787 1.64271502 1.866218048 1.928332085 1 16.01682898 -10.04600532 4.197541768 0.999928041 1.751823189 0.277033103 0.360672327 64697081.81 148969521 70048.78297 0.091438515 8.99E-11 10.04600532 0.751895148 RFS(ph)SSDFSDLSNGEELQETCSSSLRR ddPTM_HeLa_A486_30min_R1 1 RFSSSDFSDLSNGEELQETCSSSLRR 26 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RFS(0.963)S(0.036)S(0.001)DFSDLSNGEELQETCSSSLRR 152.49 1.38E-09 192870000 24297 24308 22346 9127.9 32918 21814 21736 27875 22143 22679 TRUE FALSE FALSE 22593.90577 22381.74555 30998.96965 21250.2125 28789.11749 19122.81047 16297.4229 21528.47101 24062.37307 17000.03078 1.329050874 1.316570884 1.823465501 1.250010236 1.693474433 1.124869167 0.958670199 1.266378354 1.415431147 1 14.05324974 -6.284064548 24.5166948 1.157568404 1.479320141 0.398257375 0.202420275 682.8577707 739943.8757 0.071033205 0.062694228 5.20E-07 6.284064548 0.321751737 RFSDS(ph)EER ddPTM_HeLa_A485_30min_R1 2 RFSDSEER 8 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 RFS(0.135)DS(0.865)EER;RFS(0.119)DS(0.881)EER ; 111.27 0.0031324 899980000 807390 1129370 1211460 865330 1228010 1006160 1138760 1219870 962570 1035630 TRUE FALSE FALSE 986991.12 1261439.997 1659629.467 912600.7868 1105745.013 1058840.982 895454.6232 920694.9698 1155748.97 777466.5004 1.269496653 1.622500772 2.134663637 1.173813645 1.42224136 1.361912033 1.151759751 1.184224619 1.486557902 1 19.56842099 -5.31665962 24.99999636 1.26923595 1.670251574 0.398265951 0.236730456 302.3776022 136895.4437 0.066684145 0.09890861 4.82E-06 5.31665962 0.401015623 RFSDS(ph)EER ddPTM_HeLa_A486_30min_R1 2 RFSDSEER 8 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 RFS(0.088)DS(0.912)EER;RFS(0.039)DS(0.961)EER ; 125.17 0.001645 1519300000 1545760 1817140 1486430 467680 1864680 1412500 1501770 1596580 1419890 1528980 TRUE FALSE FALSE 1437410.206 1673143.208 2062015.504 1088782.675 1630794.447 1238240.111 1126011.262 1233073.587 1542967.208 1146113.456 1.254160484 1.459840821 1.799137331 0.949978093 1.422890935 1.080381794 0.982460555 1.075873929 1.346260442 1 20.12831844 -5.273003886 24.99635675 1.130631021 1.499925688 0.458745647 0.189901213 658.3279732 1422955.827 0.053455702 0.080057168 5.33E-06 5.273003886 0.369294667 RFSRTK ddPTM_HeLa_A485_30min_R1 2 RFSRTK 6 2 Q9C0A1 Q9C0A1 ZFHX2 Zinc finger homeobox protein 2 0 0 ; ; 92.692 0.020936 2314500000 752540 1500780 1902470 139015 1711610 958140 706650 1044970 1641000 265410 FALSE FALSE TRUE 919939.9268 1676283.166 2606272.821 146609.0374 1541196.099 1008306.729 555668.4547 788689.4691 1970333.648 199248.1715 4.617055804 8.413041652 13.0805357 0.735811206 7.735057677 5.060556999 2.788825867 3.958327261 9.888841804 1 17.60420696 -5.265563616 24.99998702 4.668543075 8.674494005 0.262465349 3.251390815 499.8385535 3029886.938 0.892018596 1.378683142 5.43E-06 5.265563616 4.005950929 RFSRTK ddPTM_HeLa_A486_30min_R1 2 RFSRTK 6 2 Q9C0A1 Q9C0A1 ZFHX2 Zinc finger homeobox protein 2 0 0 ; ; 89.903 0.022391 1979620000 960820 1429430 1802080 36284.2 1673230 665680 401390 821820 1128280 84767 FALSE FALSE TRUE 893471.4797 1316156.761 2499893.637 84471.4513 1463357.891 583555.1697 300957.9765 634709.5262 1226080.219 63540.79146 14.06138418 20.71357203 39.34313029 1.329405085 23.03021189 9.183945562 4.736453066 9.989008818 19.29595447 1 15.95539544 -5.278065756 24.99116827 10 24.30678537 0.372654308 8.858457729 861.4106816 1294787.607 2.475416145 3.683046106 5.27E-06 5.278065756 14.30678537 RFSSSDFSDLS(ph)NGEELQETCSSSLRR ddPTM_HeLa_A485_30min_R1 1 RFSSSDFSDLSNGEELQETCSSSLRR 26 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RFS(0.003)SSDFS(0.003)DLS(0.993)NGEELQETCSSSLRR 95.741 0.0018666 197910000 27466 37609 32613 25561 51472 36532 49640 63193 38666 45273 TRUE FALSE FALSE 33575.71694 42007.0454 44677.90584 26957.33271 46347.26695 38444.75903 39034.00848 47694.81767 46425.91153 33987.27429 0.98789084 1.235963939 1.314548071 0.793159595 1.363665311 1.131151581 1.148488936 1.403313995 1.365979253 1 15.05270704 -7.161101121 10.39966831 1.288369436 1.144501297 0.070784991 0.183264682 1.046377507 102.1147192 0.08316304 0.04798934 6.90E-08 7.161101121 -0.143868139 RFVNQLNT(ph)KY(ph)RDS(ph)LPQLPK ddPTM_HeLa_A485_30min_R1 1 RFVNQLNTKYRDSLPQLPK 19 3 Q5SZL3;U3KPS8;Q5SZL5;Q5SZL6;Q5SZL4;Q9P0N9-3;Q9P0N9-2;Q9P0N9 Q5SZL3 TBC1D7 TBC1 domain family member 7 3 0 RFVNQLNT(1)KY(1)RDS(1)LPQLPK 40.52 0.030819 1561900000 709720 413520 276940 583380 937750 515290 460390 472940 204930 348960 TRUE FALSE FALSE 867594.7655 461877.5669 379391.6304 615248.5722 844384.3174 542269.7876 362023.9155 356950.7235 246057.5713 261970.6941 3.311800842 1.763088686 1.448221648 2.348539688 3.223201435 2.069963548 1.381925244 1.36255975 0.939256095 1 17.99904591 -6.76749206 3.093015906 1.156821747 2.349797048 0.540811338 0.545693488 0.228941791 4.517812629 0.258010201 0.17625741 1.71E-07 6.76749206 1.192975302 RFVNVVPTFGK(ac)K ddPTM_HeLa_A485_30min_R1 2 RFVNVVPTFGKK 12 2 E9PR30;P62861 E9PR30 FAU 40S ribosomal protein S30 0 1 ; RFVNVVPTFGK(1)K;RFVNVVPTFGK(1)K 133.32 0.0022773 252460000 379020 475410 404690 377090 560770 503640 682010 740130 421570 561080 FALSE TRUE FALSE 463331.6914 531005.064 554401.6716 397689.4719 504937.7698 530009.8116 536292.992 558611.957 506175.2321 421213.0819 1.099993593 1.260656629 1.316202405 0.944152708 1.198770388 1.258293805 1.273210674 1.326198024 1.201708242 1 18.68419072 -5.999598306 24.99993515 1.23526141 1.161424911 0.028050405 0.123084473 42.22300003 2627534.86 0.038285021 0.043015041 1.00E-06 5.999598306 -0.073836499 RFVNVVPTFGK(ac)K ddPTM_HeLa_A486_30min_R1 2 RFVNVVPTFGKK 12 2 E9PR30;P62861 E9PR30 FAU 40S ribosomal protein S30 0 1 ; RFVNVVPTFGK(1)K;RFVNVVPTFGK(1)K 147.96 0.00073662 255750000 549640 510330 372400 186286 585870 515470 600420 570370 426740 610840 FALSE TRUE FALSE 511113.0743 469889.5922 516603.2532 433683.2224 512384.7216 451876.5523 450188.5654 440509.2021 463730.1668 457881.6881 1.116255766 1.026224906 1.128246153 0.94715127 1.119033005 0.986884962 0.983198449 0.962059007 1.012772904 1 18.80461534 -5.618324278 0.593402113 0.98246759 1.097242995 0.322615674 0.05316467 1.300742994 0.901170005 0.035320871 0.084090119 2.41E-06 5.618324278 0.114775405 RFVS(ph)EGDGGR ddPTM_HeLa_A485_30min_R1 3 RFVSEGDGGR 10 1 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 RFVS(1)EGDGGR;RFVS(1)EGDGGR;RFVS(1)EGDGGR ;; 109.6 0.00045089 2447650000 1408730 2225950 2028620 1199030 2030880 1817050 1814020 2238250 1733330 1338330 TRUE FALSE FALSE 1722097.128 2486255.489 2779090.956 1264529.973 1828678.456 1912187.928 1426439.808 1689315.678 2081193.432 1004708.961 1.714025847 2.474602681 2.76606566 1.258603259 1.82010764 1.903225712 1.41975424 1.68139804 2.071439106 1 19.93834622 -8.023164797 0.088710199 4.62E-14 3.159217273 0.320275132 0.418045721 23.33654648 1.393962907 26.23112202 20.78191142 9.48E-09 8.023164797 3.159217273 RFVS(ph)EGDGGR ddPTM_HeLa_A486_30min_R1 3 RFVSEGDGGR 10 1 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 RFVS(1)EGDGGR;RFVS(1)EGDGGR;RFVS(1)EGDGGR ;; 130.19 4.78E-05 1545100000 741390 791460 734270 248000 958960 728210 801110 851820 664340 831270 TRUE FALSE FALSE 689422.3895 728741.8272 1018599.008 577356.5332 838678.2949 638370.8541 600663.8047 657879.1811 721925.5261 623114.5813 1.106413508 1.169514964 1.634689733 0.926565596 1.345945545 1.024483896 0.963970067 1.055791665 1.158575883 1 19.24913795 -6.279634234 24.37124407 1.039264117 1.237786573 0.236644375 0.176053021 910.352265 1219374.564 0.061094245 0.053993938 5.25E-07 6.279634234 0.198522456 RGAAAADLLS(ph)SSPESQHGGTQSPGGGQPLLQPTK ddPTM_HeLa_A486_30min_R1 1 RGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 34 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 RGAAAADLLS(0.428)S(0.324)S(0.246)PES(0.001)QHGGT(0.001)QS(0.001)PGGGQPLLQPTK 135.59 1.13E-06 606810000 185830 236860 146290 13592 244740 191450 193720 205850 198680 98826 TRUE FALSE FALSE 172804.2766 218090.351 202937.4058 31642.8629 214042.4271 167830.8455 145249.207 158982.4487 215901.7424 74079.32635 2.332692333 2.944010991 2.739460735 0.427148362 2.889367893 2.265555774 1.960725268 2.146110886 2.91446687 1 16.17678336 -10.63068258 2.785453546 0.881019778 2.27149992 0.230943255 0.705984539 134814768.8 126039202.8 115660247.8 0.175807058 2.34E-11 10.63068258 1.390480142 RGAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_HeLa_A485_30min_R1 1 RGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 41 2 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 RGAAAADLLS(0.079)S(0.53)S(0.387)PES(0.003)QHGGTQSPGGGQPLLQPTKVDAAEGR 198.41 1.28E-30 429240000 42600 78780 57464 18636 88138 65837 87661 126770 55746 38091 TRUE FALSE FALSE 52076.22303 87992.63571 78722.32488 19654.03749 79362.67125 69284.12352 68931.51123 95679.45873 66933.71087 28595.61471 1.821126196 3.077137407 2.752950957 0.687309494 2.775344123 2.422893308 2.410562316 3.34594866 2.340698444 1 14.8035063 RGAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK ddPTM_HeLa_A485_30min_R1 1 RGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 34 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 RGAAAADLLS(0.242)S(0.178)S(0.559)PES(0.01)QHGGT(0.01)QSPGGGQPLLQPTK 134.29 1.38E-06 391070000 152470 180770 161460 105780 202260 134860 190590 173190 180870 199790 TRUE FALSE FALSE 186386.4255 201909.479 221190.7729 111558.4936 182122.2842 141921.0611 149868.8895 130714.8809 217168.95 149986.0299 1.242691907 1.34618857 1.474742502 0.743792563 1.214261651 0.946228533 0.999218992 0.871513707 1.447927851 1 17.1944686 -5.242057001 24.99903681 1.029168847 1.35370576 0.383416384 0.187502184 829.7625729 1070211.163 0.048360223 0.083609773 5.73E-06 5.242057001 0.324536912 RGAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_HeLa_A485_30min_R1 2 RGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 41 2 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 0 RGAAAADLLS(0.005)S(0.162)S(0.833)PES(0.001)QHGGTQSPGGGQPLLQPTKVDAAEGR;RGAAAADLLSS(0.215)S(0.785)PESQHGGTQSPGGGQPLLQPTKVDAAEGR ; 240.53 1.38E-52 2185390000 242257 486570 327280 132126 514350 415870 567960 733960 338280 255519 TRUE FALSE FALSE 296146.2339 543470.1289 448354.4913 139343.7088 463139.508 437644.3101 446610.7062 553955.1592 406169.6931 191822.8158 1.543853022 2.833188152 2.337336617 0.726418848 2.414413041 2.281502898 2.328246014 2.887848127 2.117421181 1 17.5494148 RGADDDRPSWR ddPTM_HeLa_A485_30min_R1 4 RGADDDRPSWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;; ;;; 148.78 5.98E-07 1543630000 123122 201433 190626 103757 222693 184123 221889 282373 149238 148701 FALSE FALSE TRUE 150510.0641 224988.8371 261146.49 109424.9822 200520.903 193763.3956 174480.6025 213120.579 179188.6977 111632.5773 1.348262915 2.015440676 2.339339432 0.980224454 1.796257936 1.735724465 1.562990004 1.909125312 1.605164926 1 16.76839858 -8.033718702 21.52360152 0.999999989 1.718948872 0.268761532 0.349665846 990.1860866 632064.9418 0.333368368 0.086075342 9.25E-09 8.033718702 0.718948883 RGADDDRPSWR ddPTM_HeLa_A486_30min_R1 4 RGADDDRPSWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;; ;;; 162.49 5.56E-08 988890000 137604 132416 121542 53523 180727 108774 137989 157574 118746 140349 FALSE FALSE TRUE 127958.6702 121922.8739 168606.3174 124604.2489 158058.5344 95354.56981 103462.6927 121697.84 129038.9989 105204.6969 1.216282866 1.158910938 1.602650095 1.184398155 1.502390474 0.906371794 0.983441764 1.156771928 1.226551691 1 16.68283959 -6.263861826 24.99659986 1.059976579 1.329992041 0.448748103 0.154151092 218.7063688 2256763.332 0.053627432 0.049515579 5.45E-07 6.263861826 0.270015462 RGAEDDRGPWR ddPTM_HeLa_A485_30min_R1 3 RGAEDDRGPWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;; ;; 100.04 0.0011357 837420000 152014 250576 272348 114800 273699 209490 258761 258954 215091 187197 FALSE FALSE TRUE 185828.9899 279878.6835 373100.8585 121071.2333 246448.5665 220458.5725 203474.5985 195445.1255 258257.7908 140532.233 1.3223229 1.991562202 2.654913044 0.861519316 1.753680001 1.568740265 1.447885614 1.390749448 1.837712141 1 17.10054154 -5.266542762 24.99316639 1.447579848 1.989795649 0.291686099 0.411765632 560.6161336 2745548.568 0.113382374 0.174054011 5.41E-06 5.266542762 0.542215801 RGAEDDRGPWR ddPTM_HeLa_A486_30min_R1 3 RGAEDDRGPWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;; ;; 124.12 5.42E-05 592160000 114331 140251 129647 44221 173171 110592 133399 141873 97140 133399 FALSE FALSE TRUE 106316.9873 129137 179849.7905 102948.7228 151450.2784 96948.28346 100021.1592 109571.615 105560.1734 99995.02212 1.063222799 1.291434286 1.798587436 1.029538477 1.514578178 0.969531097 1.000261384 1.095770696 1.055654283 1 16.60956866 -6.27414176 24.88024028 1.028730265 1.34509132 0.367753726 0.206554319 821.7203538 1609504.295 0.071860592 0.063785031 5.32E-07 6.27414176 0.316361056 RGAPS(ph)SPATGVLPSPQGK ddPTM_HeLa_A485_30min_R1 2 RGAPSSPATGVLPSPQGK 18 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 0 RGAPS(0.5)S(0.5)PATGVLPSPQGK;RGAPS(0.499)S(0.499)PAT(0.001)GVLPSPQGK ; 176.57 3.62E-13 1146820000 820180 983360 749270 785660 1196660 1029330 1343600 1675620 823700 1142320 TRUE FALSE FALSE 1002626.211 1098355.398 1026456.153 828578.6164 1077516.329 1083224.127 1056528.884 1264671.568 989009.0346 857560.6468 1.169160706 1.280790346 1.19694876 0.966204104 1.256489943 1.263145797 1.23201652 1.474731347 1.15328174 1 19.70987918 RGAPS(ph)SPATGVLPSPQGK ddPTM_HeLa_A486_30min_R1 2 RGAPSSPATGVLPSPQGK 18 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 0 RGAPS(0.5)S(0.5)PATGVLPSPQGK;RGAPS(0.497)S(0.497)PAT(0.007)GVLPSPQGK ; 156.05 7.67E-09 754850000 1043040 961780 701590 411870 1130840 976310 1244360 1289620 818180 1238520 TRUE FALSE FALSE 969928.2823 885565.0501 973264.4372 958854.1748 988999.5025 855862.7986 933007.9665 996001.6782 889100.5012 928386.5306 1.044746181 0.953875375 1.048339679 1.032817844 1.065288509 0.921881964 1.004977922 1.072830815 0.957683542 1 19.82436607 RGAPSSPAT(ph)GVLPS(ph)PQGK ddPTM_HeLa_A486_30min_R1 1 RGAPSSPATGVLPSPQGK 18 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 2 0 RGAPS(0.092)S(0.11)PAT(0.798)GVLPS(1)PQGK 67.413 0.0059045 170620000 144040 178630 116760 98913 202840 187760 242530 224060 162360 215650 TRUE FALSE FALSE 133943.5398 164474.7082 161972.5989 230274.4628 177397.9158 164596.0802 181846.4288 173046.4292 176433.4955 161649.8364 0.828603003 1.017475254 1.001996677 1.424526421 1.097420943 1.018226086 1.124940383 1.070501728 1.091454835 1 17.30251252 -4.402779125 1.860901096 1.116159247 0.79121645 0.350888823 0.114817634 0.689873222 3.111331296 0.032335343 0.353732981 3.96E-05 4.402779125 -0.324942798 RGAQPGRHS(ph)VTGYGDCAVGAR ddPTM_HeLa_A485_30min_R1 4 RGAQPGRHSVTGYGDCAVGAR 21 2 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 RGAQPGRHS(1)VTGYGDCAVGAR;RGAQPGRHS(0.999)VT(0.001)GYGDCAVGAR;RGAQPGRHS(1)VTGYGDCAVGAR;RGAQPGRHS(0.951)VT(0.049)GYGDCAVGAR ;;; 240.08 1.05E-46 3142160000 285750 474248 431909 209770 529236 439290 552628 714360 328624 331070 TRUE FALSE FALSE 349314.1017 529707.1782 591690.1123 221229.2039 476543.4056 462290.5451 434554.5132 539162.0899 394575.8225 248540.3419 1.405462385 2.131272429 2.380660249 0.890113863 1.917368432 1.860022166 1.748426472 2.169314188 1.587572542 1 17.92312052 -8.017962863 22.57560995 0.999999958 1.818521018 0.275625525 0.398225249 428.8434128 538969.4636 0.379257289 0.097923811 9.59E-09 8.017962863 0.818521059 RGAQPGRHS(ph)VTGYGDCAVGAR ddPTM_HeLa_A486_30min_R1 4 RGAQPGRHSVTGYGDCAVGAR 21 2 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 RGAQPGRHS(0.994)VT(0.006)GYGDCAVGAR;RGAQPGRHS(1)VTGYGDCAVGAR;RGAQPGRHS(0.992)VT(0.008)GYGDCAVGAR;RGAQPGRHS(0.992)VT(0.008)GYGDCAVGAR ;;; 201.97 7.75E-27 1708620000 357611 354117 334446 132747 497210 316162 391978 398157 264609 344103 TRUE FALSE FALSE 332544.3156 326055.4792 463952.448 309041.7247 434845.2855 277157.1469 293900.9585 307505.3428 287545.5212 257937.3691 1.289244427 1.264087792 1.798701947 1.198126994 1.685856094 1.074513352 1.139427604 1.19217058 1.114788145 1 17.97666128 -6.286476954 24.83536517 1.118393539 1.44272049 0.475717474 0.179713459 661.2468999 655904.2082 0.061025225 0.053842484 5.17E-07 6.286476954 0.324326951 RGASGS(ph)IFSK ddPTM_HeLa_A485_30min_R1 1 RGASGSIFSK 10 1 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 RGAS(0.34)GS(0.66)IFSK 44.511 0.03756 54722000 60199 75227 60848 63693 92932 79787 92334 107730 66196 94464 TRUE FALSE FALSE 73590.05987 84024.14326 83358.2073 67172.38731 83679.36378 83964.52395 72606.0866 81309.04859 79480.93001 70915.86328 1.037709427 1.184842705 1.175452197 0.947212432 1.179980894 1.184002 1.023834206 1.146556565 1.120777867 1 16.11382076 -10.26049683 2.970414431 0.999287535 1.113028997 0.154060197 0.07802667 22372351.25 28814975.34 145226.7019 0.019324531 5.49E-11 10.26049683 0.113741462 RGAT(ph)PPAPPR ddPTM_HeLa_A485_30min_R1 2 RGATPPAPPR 10 1 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 0 RGAT(1)PPAPPR;RGAT(1)PPAPPR ; 64.65 0.018159 2115250000 175732 171878 203795 201021 237060 186002 206129 189544 212397 266380 TRUE FALSE FALSE 214822.9771 191977.637 279187.2511 212002.2682 213457.474 195740.7771 162087.8552 143058.0368 255023.1297 199976.3684 1.074241816 0.960001617 1.396101216 1.060136605 1.067413494 0.978819541 0.810535048 0.715374711 1.275266332 1 17.60947 -6.161589534 2.250891697 0.925375949 1.127928733 0.170416503 0.171339864 0.496769439 4.940380178 0.064778778 0.063807189 6.89E-07 6.161589534 0.202552784 RGAT(ph)PPAPPR ddPTM_HeLa_A486_30min_R1 4 RGATPPAPPR 10 1 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 0 RGAT(1)PPAPPR;RGAT(1)PPAPPR;RGAT(1)PPAPPR;RGAT(1)PPAPPR ;;; 63.091 0.020775 3038640000 212818 285705 202008 72534 285188 263667 276256 307649 234089 261292 TRUE FALSE FALSE 197900.5572 263064.6953 280230.9076 168862.8177 249417.0618 231138.4463 207133.8269 237604.0386 254380.023 195862.7825 1.010404094 1.343107108 1.430751182 0.862148569 1.273427543 1.180103966 1.057545616 1.213114792 1.298766513 1 17.57948376 -10.6798603 2.677976728 0.974029709 1.187303145 0.107080359 0.160610454 67399845.01 56303536.42 11888631.01 0.039012253 2.09E-11 10.6798603 0.213273435 RGDDS(ph)FGDKYR ddPTM_HeLa_A485_30min_R1 3 RGDDSFGDKYR 11 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 RGDDS(1)FGDKYR;RGDDS(1)FGDKYR;RGDDS(1)FGDKYR ;; 128.74 3.46E-05 1772440000 1023010 987430 784450 1136420 1458950 1105310 1518920 1612500 866540 1597680 TRUE FALSE FALSE 1250575.045 1102901.349 1074650.699 1198499.747 1313691.815 1163182.322 1194390.334 1217031.847 1040446.63 1199407.779 1.042660442 0.919538266 0.895984433 0.999242933 1.095283721 0.969797214 0.995816731 1.014693975 0.867466968 1 20.1938908 -4.210291629 21.80818421 0.976384126 1.042662103 0.099207778 0.062180799 23882.17934 10181367.23 0.016109726 10.53525036 6.16E-05 4.210291629 0.066277977 RGDDS(ph)FGDKYR ddPTM_HeLa_A486_30min_R1 4 RGDDSFGDKYR 11 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 RGDDS(1)FGDKYR;RGDDS(1)FGDKYR;RGDDS(1)FGDKYR;RGDDS(1)FGDKYR ;;; 137.17 1.22E-05 2356870000 1742356 1727696 1197997 815419 1960014 1920925 2368286 2225791 1346886 2356976 TRUE FALSE FALSE 1620225.842 1590787.077 1661893.522 1898336.641 1714170.768 1683940.804 1775715.794 1719026.978 1463635.163 1766773.868 0.91705332 0.900390879 0.940637368 1.074464975 0.970226467 0.953116205 1.00506116 0.972975098 0.828422465 1 20.75268597 -1.445504697 11.04902134 0.958439894 0.898846172 0 0.063281229 0 0 0.014794507 0 0.035850507 1.445504697 -0.059593722 RGDDSFGDKYR ddPTM_HeLa_A485_30min_R1 2 RGDDSFGDKYR 11 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 132.86 2.73E-05 452910000 88293 113020 86970 101530 113950 123060 147610 183420 91839 130930 FALSE FALSE TRUE 107933.4732 126236.7059 119143.8221 107076.3268 102604.7379 129503.2313 116071.9176 138435.9574 110270.2449 98291.56059 1.098095021 1.284308694 1.212147019 1.089374573 1.043881461 1.317541715 1.180894035 1.408421604 1.121868899 1 16.58477993 -6.271896039 24.965549 1.229718389 1.153847251 0.038398286 0.120917417 1899.292051 4534593.825 0.041428757 0.036921558 5.35E-07 6.271896039 -0.075871138 RGDDWNDREWDR ddPTM_HeLa_A485_30min_R1 4 RGDDWNDREWDR 12 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ;;; ;;; 222.74 3.83E-23 2589870000 798031 956279 1042160 610281 1163200 946020 1162750 1207120 728853 880688 FALSE FALSE TRUE 975550.2428 1068107.511 1427698.352 643619.1057 1047387.724 995552.1444 914318.9637 911071.9273 875127.1117 661148.6895 1.475538345 1.615532977 2.159420981 0.97348617 1.584193904 1.505791602 1.382924867 1.378013663 1.323646444 1 19.33461524 -8.583455291 0.145070686 0.616937111 1.877102666 0.307195372 0.264083548 15.16181929 0.990669736 5.222023355 2.585875181 2.61E-09 8.583455291 1.260165555 RGDDWNDREWDR ddPTM_HeLa_A486_30min_R1 2 RGDDWNDREWDR 12 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ; ; 190.1 2.79E-13 791500000 373630 337310 301700 129882 491550 337460 370600 377500 253514 335940 FALSE FALSE TRUE 347440.4664 310580.3271 418526.3198 302371.8599 429895.2155 295827.6162 277871.9602 291551.4908 275488.7976 251818.4374 1.379726084 1.233350228 1.66201619 1.20075346 1.707163383 1.174765515 1.103461538 1.157784528 1.093997725 1 17.94202439 -6.498483964 23.42277392 1.107267281 1.42635392 0.537100388 0.154583193 269.4575317 258721.6347 0.051373363 0.045030707 3.17E-07 6.498483964 0.319086638 RGDGEKS(ph)DEENEEKEGSK ddPTM_HeLa_A485_30min_R1 2 RGDGEKSDEENEEKEGSK 18 3 D6R9U7;O15318 D6R9U7 POLR3G DNA-directed RNA polymerase III subunit RPC7 1 0 RGDGEKS(1)DEENEEKEGSK;RGDGEKS(1)DEENEEKEGSK ; 234.3 2.21E-44 886510000 617600 244663 148085 1908730 456850 442210 1006330 658960 264335 2557130 TRUE FALSE FALSE 754982.9893 273274.2096 202867.8038 2012999.087 411364.4099 465363.4318 791319.3745 497349.0268 317384.6099 1919684.551 0.393284922 0.142353706 0.105677677 1.048609307 0.214287503 0.242416616 0.412213233 0.259078517 0.165331648 1 20.87243783 -10.1468387 3.835896612 1.000349892 0.334541057 0.376504821 0.258063161 367285617.7 645135349.8 1602401.559 0.066914921 7.13E-11 10.1468387 -0.665808835 RGDGEKS(ph)DEENEEKEGSK ddPTM_HeLa_A486_30min_R1 1 RGDGEKSDEENEEKEGSK 18 3 D6R9U7;O15318 D6R9U7 POLR3G DNA-directed RNA polymerase III subunit RPC7 1 0 RGDGEKS(1)DEENEEKEGSK 108.55 0.0006977 587100000 391640 304280 48075 710500 251720 651740 1035100 733500 215850 1453100 TRUE FALSE FALSE 364188.0584 280167.7446 66690.92749 1654079.907 220146.9304 571334.9452 776107.0318 566498.0622 234560.0518 1089234.302 0.334352359 0.257215316 0.061227348 1.51857126 0.202111639 0.524528969 0.712525331 0.520088342 0.215343982 1 20.05488289 -11.50339774 2.219437004 7.615842112 0.495122423 0.13518099 0.391285409 69998939.23 4011394.38 2336037912 0.096562077 3.14E-12 11.50339774 -7.120719689 RGDLPFVVPR ddPTM_HeLa_A485_30min_R1 4 RGDLPFVVPR 10 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 169.58 7.26E-07 894934000 286365 373890 365921 283651 431511 366072 432283 464308 334900 395646 FALSE FALSE TRUE 350065.9063 417613.1831 501290.4051 299146.1359 388548.2497 385238.9639 339922.2056 350435.735 402111.3581 297018.7335 1.178598744 1.406016308 1.687740026 1.007162519 1.308160752 1.297019078 1.144447024 1.17984388 1.353824903 1 18.1801944 -14 0.086793936 0.064610834 1.537062743 0.210668629 0.171947036 346.6925612 2.099991034 60.53801305 4.642154886 1.00E-14 14 1.472451909 RGDLPFVVPR ddPTM_HeLa_A486_30min_R1 2 RGDLPFVVPR 10 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 154 6.18E-06 873230000 334220 342380 322240 123674 459040 306600 361280 363170 291490 324790 FALSE FALSE TRUE 310792.9039 315248.5619 447019.9579 287919.3221 401462.9228 268774.8093 270883.9228 280484.1189 316756.5879 243460.47 1.276564134 1.294865495 1.836108991 1.182612201 1.648986067 1.103977205 1.112640269 1.152072527 1.301059626 1 17.89332802 -6.282773515 24.68962028 1.142122573 1.446166527 0.404428499 0.190313394 733.2247791 848545.1655 0.06507895 0.057449911 5.21E-07 6.282773515 0.304043954 RGDPFTDLCFLNS(ph)PIFK ddPTM_HeLa_A485_30min_R1 2 RGDPFTDLCFLNSPIFK 17 1 Q5FBB7-6;Q5FBB7;Q5FBB7-5;Q5FBB7-4;Q5FBB7-3;Q5FBB7-2 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 RGDPFTDLCFLNS(1)PIFK;RGDPFTDLCFLNS(1)PIFK ; 193.87 1.64E-18 284500000 282544 295086 225137 314540 422840 324925 430830 485580 264282 469260 TRUE FALSE FALSE 345394.938 329593.7408 308424.545 331722.5237 380740.5649 341937.5706 338779.6509 366490.7436 317320.9733 352282.1181 0.980449816 0.935596001 0.875504402 0.941638836 1.080783115 0.970635616 0.961671438 1.040333088 0.900758105 1 18.42637172 -5.545199955 24.99919672 0.993527563 0.92728245 0.247876811 0.050564867 303.749293 340189.6957 0.014642366 0.018904563 2.85E-06 5.545199955 -0.066245113 RGDPFTDLCFLNS(ph)PIFK ddPTM_HeLa_A486_30min_R1 2 RGDPFTDLCFLNSPIFK 17 1 Q5FBB7-6;Q5FBB7;Q5FBB7-5;Q5FBB7-4;Q5FBB7-3;Q5FBB7-2 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 RGDPFTDLCFLNS(1)PIFK;RGDPFTDLCFLNS(1)PIFK ; 186.13 5.80E-18 256400000 464540 494090 308730 244340 531760 498570 636230 590800 417290 589120 TRUE FALSE FALSE 431978.1449 454936.509 428278.5241 568835.8683 465061.7023 437061.5025 477038.5246 456287.7371 453461.0332 441600.5175 0.978210233 1.030199221 0.969832478 1.288123192 1.053127621 0.989721446 1.080249016 1.033259063 1.02685802 1 18.75238234 -9.567698503 14.00528401 1.000006485 1.052742733 0.028517906 0.086092644 0 0 0.084848787 0.020578853 2.71E-10 9.567698503 0.052736248 RGDRYDDYRDYDS(ph)PER ddPTM_HeLa_A486_30min_R1 1 RGDRYDDYRDYDSPER 16 3 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 RGDRYDDYRDYDS(1)PER 174.2 1.10E-11 245010000 95867 84468 84370 34379 146870 81705 100030 99968 54024 103960 TRUE FALSE FALSE 89147.21836 77774.44805 117040.3235 80036.04942 128448.1951 71625.06782 75001.43599 77207.46869 58706.84382 77927.73933 1.143972854 0.998032905 1.501908364 1.02705468 1.648298747 0.919121592 0.962448502 0.990757198 0.753349761 1 16.24984934 -6.405349452 21.39551261 0.926772186 1.252632841 0.425052264 0.196744167 6.596888948 1179.760974 0.066555969 0.058696753 3.93E-07 6.405349452 0.325860655 RGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_A485_30min_R1 2 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RGDS(1)ES(1)EEDEQDSEEVR;RGDS(1)ES(1)EEDEQDSEEVR ; 229.89 5.30E-35 3079200000 405070 449430 473840 554110 600380 448000 585120 579070 495040 743390 TRUE FALSE FALSE 495176.424 501986.929 649133.1341 584379.6262 540604.0591 471456.5873 460104.332 437052.1746 594389.9872 558076.5541 0.887291216 0.899494747 1.16316145 1.047131656 0.96869158 0.844788379 0.824446626 0.783140183 1.06506891 1 19.09010351 -6.084356035 5.108047265 0.88571427 1.00442527 0.144431253 0.106308314 0.371839428 16.44958656 0.036703627 0.037134597 8.23E-07 6.084356035 0.118711 RGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_A485_30min_R1 1 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RGDS(1)ES(0.001)EEDEQDS(0.999)EEVR 296.55 8.99E-69 2653700000 635490 706060 630700 824840 856600 651380 892890 834720 631350 998190 TRUE FALSE FALSE 776852.5581 788627.5751 864022.1756 869898.9206 771313.8963 685485.2496 702116.7573 630003.6112 758056.1539 749359.6033 1.0366886 1.05240204 1.153014083 1.160856439 1.029297407 0.914761413 0.936955707 0.840722676 1.01160531 1 19.51529868 -6.063966383 3.867788389 0.93154526 1.101106305 0.631754792 0.057288534 0.145922266 4.298173599 0.019736531 0.020393826 8.63E-07 6.063966383 0.169561045 RGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_A486_30min_R1 2 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RGDS(1)ESEEDEQDS(1)EEVR;RGDS(0.998)ES(0.023)EEDEQDS(0.979)EEVR ; 270.37 3.73E-53 5096400000 1757710 2098510 1547200 822580 2279280 2018700 2315240 2358740 1813140 2137070 TRUE FALSE FALSE 1634503.606 1932216.425 2146317.275 1915007.811 1993391.449 1769653.319 1735942.464 1821706.393 1970304.435 1601933.762 1.02033158 1.206177478 1.339828978 1.195435077 1.244365714 1.104698185 1.083654334 1.137192084 1.229953748 1 20.61138306 -6.270333594 24.35755257 1.117958837 1.208881001 0.193718381 0.090733255 816.9983768 2237411.079 0.032342592 0.028956982 5.37E-07 6.270333594 0.090922164 RGDS(ph)QECS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RGDSQECSPR 10 1 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 2 0 RGDS(1)QECS(1)PR 122.15 8.78E-05 0 117960 150250 109400 212160 128760 138480 166140 189740 173870 261820 TRUE FALSE FALSE 144199.795 167820.4305 149871.6125 223749.7636 115940.2023 145730.5987 130642.8318 143205.9675 208764.1142 196553.0924 0.733642973 0.853817299 0.762499387 1.138368065 0.589867098 0.741431218 0.664669429 0.728586692 1.062125818 1 17.58455954 -7.764208497 24.99678324 1.031063032 0.779643291 0.350504615 0.138501254 85.12464896 768347.4743 0.11696627 0.035452652 1.72E-08 7.764208497 -0.251419741 RGDS(ph)QECS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RGDSQECSPR 10 1 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 2 0 RGDS(1)QECS(1)PR;RGDS(1)QECS(1)PR ; 120.49 0.00011588 114802000 196424 134776 248197 89526 170804 365598 247852 230311 320250 275358 TRUE FALSE FALSE 182655.6919 124095.8589 344305.5253 208421.0524 149380.1696 320494.2359 185836.8081 177874.213 348009.5279 206406.5645 0.884931603 0.601220505 1.668093872 1.009759805 0.723718114 1.552732766 0.900343497 0.861766259 1.686039049 1 17.65512933 -4.707373342 24.99999975 1.151994107 0.743075085 0.20725399 0.335666002 149.2719065 69020.43544 0.082593429 0.218521374 1.96E-05 4.707373342 -0.408919022 RGDSQECS(ph)PR ddPTM_HeLa_A485_30min_R1 3 RGDSQECSPR 10 1 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 RGDS(0.255)QECS(0.745)PR;RGDS(0.15)QECS(0.85)PR;RGDS(0.416)QECS(0.584)PR ;; 98.105 0.0018207 10727000 190355 179006 92587 266446 105351 224508 124096 211412 191679 258165 TRUE FALSE FALSE 232698.813 199939.1946 126838.7842 281001.2703 94861.88453 236262.8917 97581.87583 159562.8755 230147.2171 193809.2167 1.200659169 1.031628929 0.654451766 1.449886002 0.489460131 1.219048793 0.503494506 0.823298697 1.187493665 1 17.56427765 -5.766798045 24.99999877 0.860711568 1.049711282 0.108037161 0.293412203 342.2334401 1596633.781 0.086693548 0.101160843 1.71E-06 5.766798045 0.188999714 RGDSQECS(ph)PR ddPTM_HeLa_A486_30min_R1 1 RGDSQECSPR 10 1 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 RGDS(0.062)QECS(0.938)PR 48.659 0.030652 887590000 71810 44539 57115 36356 42963 83597 53832 57356 75118 111360 TRUE FALSE FALSE 66776.48983 41009.56743 79231.45759 84638.60533 37574.17993 73283.65209 40362.66422 44297.29087 81629.28872 83474.73117 0.799960526 0.491281216 0.949166969 1.013942832 0.450126396 0.877914203 0.483531527 0.530667068 0.977892203 1 16.34905192 -7.833128441 9.567979258 0.992761153 0.701980878 0.258583454 0.195981118 0.554862915 68.51700057 0.190058203 0.049160478 1.47E-08 7.833128441 -0.290780275 RGDTWHDRDR ddPTM_HeLa_A485_30min_R1 4 RGDTWHDRDR 10 2 E9PMV7;E9PLA7;E9PIN3;Q9UBU9-2;Q9UBU9 E9PMV7 NXF1 Nuclear RNA export factor 1 0 0 ;;; ;;; 151.79 2.67E-06 320865000 80456 131866 117223 52599 151231 107458 54409.7 194066 67807 83848 FALSE FALSE TRUE 98353.15963 147286.5816 160588.6658 55472.35018 136173.9106 113084.3347 42784.62311 146471.0092 81415.24294 62946.23671 1.562494674 2.339879067 2.551203601 0.881265554 2.163336805 1.796522566 0.679701049 2.326922416 1.29340922 1 15.94183251 -5.867113821 0.074135593 1.33E-06 3.539557307 0.177637355 0.582087965 96.26056816 2.255268903 39.73992629 67.02699617 1.36E-06 5.867113821 3.53955598 RGDTWHDRDR ddPTM_HeLa_A486_30min_R1 4 RGDTWHDRDR 10 2 E9PMV7;E9PLA7;E9PIN3;Q9UBU9-2;Q9UBU9 E9PMV7 NXF1 Nuclear RNA export factor 1 0 0 ;;; ;;; 157.68 1.11E-06 193643000 109945 68640 72896 37219 162434 75003 61027 53436.7 19308.3 43505.4 FALSE FALSE TRUE 102238.4233 63200.71642 101123.2834 86647.71294 142060.0131 65749.89243 45757.39912 41270.32992 20981.95899 32611.36467 3.135055043 1.937996679 3.10086022 2.656979057 4.356150518 2.016165012 1.403112062 1.265519868 0.643394081 1 14.99308719 -6.621661485 3.200681372 1.079887582 2.974423071 0.702219642 0.597625244 0.148130954 3.027343729 0.251876487 0.18857794 2.39E-07 6.621661485 1.894535489 RGEAHLAVNDFELAR ddPTM_HeLa_A485_30min_R1 4 RGEAHLAVNDFELAR 15 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ;;; ;;; 179.81 1.41E-17 684919000 193602 266615 254198 202209 307701 256561 316086 371361 229768 273053 FALSE FALSE TRUE 236668.097 297793.305 348236.4183 213255.1656 277065.208 269994.1372 248551.6439 280284.1325 275880.33 204985.9123 1.154557864 1.452750102 1.69883098 1.040340594 1.351630485 1.317135086 1.212530369 1.367333635 1.345850195 1 17.64516524 -12.65427972 0.277330404 1.86E-11 1.356195064 0.24931136 0.168423541 141.6227968 2.712859421 81.22740149 0.203261052 2.22E-13 12.65427972 1.356195064 RGEAHLAVNDFELAR ddPTM_HeLa_A486_30min_R1 2 RGEAHLAVNDFELAR 15 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ; ; 158.17 3.59E-08 72722000 43412 34420 33424 13920.1 46530 36491 44488 45585 38814 38996 FALSE FALSE TRUE 40369.04298 31692.43384 46366.66793 32406.69628 40693.77352 31989.11143 33356.63185 35206.29061 42178.42877 29231.14778 1.381028322 1.084200801 1.586207571 1.108635779 1.392137381 1.094350166 1.141133154 1.204410134 1.442927561 1 14.83521886 -6.260646783 24.99991367 1.187125398 1.301981871 0.130891138 0.170717274 182.0557152 5742440.701 0.055630837 0.05256981 5.49E-07 6.260646783 0.114856473 RGEDPPT(ph)PPPRPQK ddPTM_HeLa_A486_30min_R1 1 RGEDPPTPPPRPQK 14 2 Q8NFH8-3;Q8NFH8-2;Q8NFH8-4;Q8NFH8 Q8NFH8-3 REPS2 RalBP1-associated Eps domain-containing protein 2 1 0 RGEDPPT(1)PPPRPQK 75.018 0.0075557 158620000 129040 128370 84049 40772 129090 118390 134390 137410 115520 156750 TRUE FALSE FALSE 119994.9624 118197.4937 116595.0237 94919.2765 112898.3285 103784.2455 100764.2006 106124.7426 125533.3666 117498.7797 1.021244328 1.005946564 0.99230838 0.807832019 0.960846817 0.883279348 0.857576571 0.903198679 1.068380173 1 16.84228625 -5.025461769 24.67013608 0.91724548 1.009978496 0.216147477 0.069725858 811.3945878 786168.3426 0.01862411 0.032442501 9.43E-06 5.025461769 0.092733016 RGEEGHDPKEPEQLR ddPTM_HeLa_A485_30min_R1 1 RGEEGHDPKEPEQLR 15 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 126.63 1.98E-05 262090000 79385 79590 57099 114950 103940 103730 143830 136230 80387 166050 FALSE FALSE TRUE 97043.91937 88897.35816 78222.29619 121229.4274 93591.36864 109161.1424 113099.5455 102819.3789 96519.93355 124656.7909 0.77848883 0.713136906 0.627501283 0.972505601 0.750792379 0.875693507 0.907287479 0.824819716 0.774285403 1 16.92760195 -5.254246773 24.99425665 0.861447723 0.707051799 0.461296424 0.081539486 523.9950919 1820875.015 0.021501487 0.036268735 5.57E-06 5.254246773 -0.154395924 RGEEGHDPKEPEQLR ddPTM_HeLa_A486_30min_R1 2 RGEEGHDPKEPEQLR 15 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ; ; 132.84 1.15E-05 955590000 610260 589580 347040 255947 678180 778630 815890 870220 474300 884190 FALSE FALSE TRUE 567483.9254 542859.5336 481423.1821 595857.5508 593116.3406 682570.5471 611745.6924 672089.9028 515412.7059 662783.0689 0.856213672 0.819060654 0.726366144 0.899023495 0.894887586 1.029855135 0.922995353 1.014042051 0.777649174 1 19.33817722 -5.553936968 2.829040459 0.944977684 0.802819773 0.402730156 0.07478997 0.255481954 4.154963526 0.022314951 0.031850753 2.79E-06 5.553936968 -0.142157911 RGEEGHDPKEPEQLRK ddPTM_HeLa_A485_30min_R1 1 RGEEGHDPKEPEQLRK 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 74.12 0.0024058 268950000 61959 60032 47669 84349 88461 82336 107480 124290 69205 115210 FALSE FALSE TRUE 75741.56579 67052.22019 65303.74677 88956.77229 79653.51223 86646.98564 84516.01997 93807.68262 83093.80871 86490.26728 0.875723572 0.775257405 0.755041565 1.028517717 0.920953475 1.001811977 0.977173763 1.084603916 0.960730164 1 16.40025018 -5.263535159 24.99851963 0.996079844 0.799332498 0.763301521 0.049562955 83.65635907 997860.3384 0.013760515 0.021605368 5.45E-06 5.263535159 -0.196747346 RGEEGHDPKEPEQLRK ddPTM_HeLa_A486_30min_R1 2 RGEEGHDPKEPEQLRK 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ; ; 154.82 9.41E-09 363350000 255851 179512 110647 144389 230779 268666 319238 313059 148928 365260 FALSE FALSE TRUE 237917.1661 165286.8153 153492.4816 336144.889 201832.5459 235520.7205 239361.2758 241782.2997 161837.199 273796.5186 0.868956141 0.603684869 0.560607865 1.227717908 0.737162572 0.860203489 0.874230531 0.883072951 0.591085671 1 18.06274458 -10.36154072 0.02384479 1.835540147 8.07E-06 0.056124393 0.190108321 3398.510962 13.65328866 614.3002436 445.4561426 4.35E-11 10.36154072 -1.83553208 RGEGDAPFS(ph)EPGTTS(ph)TQRPSSPETATK ddPTM_HeLa_A485_30min_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGEGDAPFS(0.478)EPGT(0.11)T(0.32)S(0.323)T(0.29)QRPS(0.302)S(0.165)PET(0.011)AT(0.001)K 75.897 0.029472 718900000 482560 350540 329870 836610 564630 419420 668900 500570 431790 1042700 TRUE FALSE FALSE 589903.8072 391532.6037 451902.64 882311.8859 508413.4547 441380.1827 525984.0506 377804.4226 518446.2924 782774.0795 0.753606721 0.500185959 0.577309152 1.127160325 0.649502159 0.563866631 0.671948733 0.482648101 0.662319188 1 19.57823646 -9.917961704 5.17665323 1.000000844 0.662890058 0.251246238 0.173241892 238843622.3 109.3640454 2403.395183 0.043516793 1.21E-10 9.917961704 -0.337110787 RGEGDAPFS(ph)EPGTTSTQRPSSPETATK ddPTM_HeLa_A485_30min_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFS(0.368)EPGT(0.283)T(0.283)S(0.019)T(0.019)QRPS(0.024)S(0.006)PETATK 86.191 0.0030997 9913200000 123580 104070 99791 192810 161770 120320 177060 125220 116860 254960 TRUE FALSE FALSE 151069.9447 116240.0812 136707.8435 203342.7221 145663.6108 126619.7691 139229.6846 94509.59866 140312.7301 191403.1642 0.789276109 0.607304909 0.714240248 1.062379104 0.761030317 0.661534357 0.727415793 0.493772394 0.733074245 1 17.54625515 -6.013941696 24.54046144 0.693952383 0.791534683 0.026010509 0.158339907 1506.813024 2652325.913 0.052003693 0.054148844 9.68E-07 6.013941696 0.0975823 RGEGDAPFS(ph)EPGTTSTQRPSSPETATK ddPTM_HeLa_A486_30min_R1 2 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFS(0.262)EPGT(0.262)T(0.262)S(0.054)T(0.054)QRPS(0.054)S(0.054)PETATK;RGEGDAPFS(0.428)EPGT(0.09)T(0.09)S(0.09)T(0.09)QRPS(0.106)S(0.106)PET(0.001)ATK ; 98.289 0.0013054 22941000000 214355 272263 180317 82736 252020 281170 342730 322690 241073 307060 TRUE FALSE FALSE 199329.8214 250687.8883 250140.5715 192613.5892 220409.3016 246482.1041 256975.329 249220.5313 261969.4017 230170.1774 0.866010635 1.089141483 1.086763604 0.836831215 0.957592787 1.070868985 1.11645797 1.082766387 1.138155276 1 17.81234139 -6.336328275 4.952160326 1.090924459 0.973546471 0.322090326 0.082495414 0.288166632 13.07750998 0.030509431 0.026922189 4.61E-07 6.336328275 -0.117377989 RGEGDAPFSEPGTT(ph)S(ph)TQRPSSPETATK ddPTM_HeLa_A486_30min_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGEGDAPFS(0.011)EPGT(0.422)T(0.471)S(0.426)T(0.388)QRPS(0.234)S(0.045)PET(0.001)ATK 99.866 0.0012422 997140000 480100 561850 273970 209920 476610 581360 635410 599790 460970 664770 TRUE FALSE FALSE 446447.4692 517326.9598 380058.5212 488704.3688 416829.1296 509637.714 476423.6973 463230.9103 500927.2508 498307.2651 0.895928076 1.038168608 0.762699137 0.980728966 0.836490171 1.022737876 0.956084189 0.929608984 1.005257771 1 18.92667608 -6.274099079 24.941175 0.976672474 0.906868974 0.223171698 0.073942466 1338.58842 2637176.008 0.024863326 0.022066822 5.32E-07 6.274099079 -0.0698035 RGEGDAPFSEPGTT(ph)STQRPSSPETATK ddPTM_HeLa_A486_30min_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFS(0.01)EPGT(0.123)T(0.51)S(0.03)T(0.03)QRPS(0.174)S(0.123)PETATK 141.9 3.50E-08 821440000 170350 205860 102860 69215 197630 232110 250860 222130 159870 246930 TRUE FALSE FALSE 158409.3447 189546.9039 142690.1467 161136.0179 172841.4026 203474.6281 188092.1747 171555.8481 173727.6603 185097.1208 0.855817444 1.024040261 0.770893389 0.870548484 0.933787635 1.099285755 1.016180986 0.926842337 0.938575703 1 17.49792293 -6.00696915 14.80338334 0.995486719 0.885192545 0.361953261 0.072521796 1.950609496 4144.030869 0.023982115 0.02587085 9.84E-07 6.00696915 -0.110294174 RGEGDAPFSEPGTTS(ph)TQRPSSPETATK ddPTM_HeLa_A485_30min_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFS(0.001)EPGT(0.009)T(0.04)S(0.663)T(0.166)QRPS(0.103)S(0.017)PET(0.001)ATK 192.89 7.44E-21 903210000 129660 91560 81626 189120 154590 110150 160620 125210 116050 237740 TRUE FALSE FALSE 158502.4197 102267.1455 111822.8541 199451.1467 139198.4768 115917.2837 126302.2249 94502.05118 139340.1705 178475.7933 0.888089173 0.573002891 0.626543533 1.117524921 0.779929167 0.649484625 0.707671458 0.529495062 0.780723077 1 17.44536889 -6.130868307 7.743182416 0.702843476 0.793881502 0.017025525 0.17825315 0.968147814 56.41277617 0.059884982 0.059956116 7.40E-07 6.130868307 0.091038026 RGEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_HeLa_A485_30min_R1 5 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGEGDAPFS(0.001)EPGT(0.001)T(0.001)S(0.005)T(0.005)QRPS(0.991)S(0.996)PETATK;RGEGDAPFSEPGT(0.067)T(0.068)S(0.068)T(0.067)QRPS(0.818)S(0.82)PET(0.085)AT(0.008)K;RGEGDAPFSEPGTTS(0.004)T(0.004)QRPS(0.992)S(0.999)PET(0.001)ATK;RGEGDAPFS(0.002)EPGT(0.062)T(0.067)S(0.038)T(0.038)QRPS(0.887)S(0.859)PET(0.044)AT(0.003)K;RGEGDAPFSEPGT(0.016)T(0.018)S(0.019)T(0.02)QRPS(0.928)S(0.93)PET(0.063)AT(0.004)K ;;;; 155.71 1.08E-09 3123910000 2237970 1570030 1518613 3566750 2578050 1970310 3025020 2167710 2017510 4696440 TRUE FALSE FALSE 2735798.706 1753631.351 2080411.143 3761592.521 2321370.29 2073472.385 2378699.765 1636075.724 2422405.751 3525703.94 0.77595815 0.497384744 0.590069722 1.066905386 0.658413279 0.588101673 0.674673712 0.464042288 0.687070098 1 21.7494799 -8.046669055 23.35293834 1.000000002 0.661665886 0.282895064 0.159387152 8042.150503 4024240.519 0.159268941 0.041123064 8.98E-09 8.046669055 -0.338334116 RGEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_HeLa_A486_30min_R1 5 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGEGDAPFSEPGT(0.004)T(0.021)S(0.002)T(0.002)QRPS(0.973)S(0.994)PET(0.004)ATK;RGEGDAPFS(0.049)EPGT(0.007)T(0.027)S(0.03)T(0.034)QRPS(0.887)S(0.953)PET(0.012)AT(0.001)K;RGEGDAPFSEPGT(0.005)T(0.018)S(0.018)T(0.019)QRPS(0.966)S(0.965)PET(0.009)AT(0.001)K;RGEGDAPFSEPGTT(0.001)S(0.001)T(0.001)QRPS(0.832)S(0.977)PET(0.183)AT(0.003)K;RGEGDAPFS(0.118)EPGT(0.22)T(0.095)S(0.166)T(0.108)QRPS(0.65)S(0.642)PETATK ;;;; 148.14 3.01E-09 4166560000 1416750 1584350 817024 643616 1470220 1795180 2100410 1851870 1382650 2019140 TRUE FALSE FALSE 1317443.141 1458800.336 1133397.573 1498370.575 1285811.298 1573708.944 1574865.202 1430239.627 1502499.215 1513534.202 0.870441606 0.963837047 0.748841732 0.989981312 0.849542281 1.039757768 1.040521714 0.944966837 0.992709127 1 20.52948985 -6.261564452 24.99999992 1.002459682 0.887255111 0.448487224 0.065975072 11.04193903 2206914.969 0.021732848 0.020413235 5.48E-07 6.261564452 -0.115204571 RGEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_HeLa_A485_30min_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFSEPGTT(0.003)S(0.018)T(0.013)QRPS(0.482)S(0.482)PET(0.002)ATK 153.07 1.21E-09 457240000 175560 108820 125700 223100 198060 141890 207500 160610 140960 293230 TRUE FALSE FALSE 214612.7163 121545.5524 172201.6608 235287.3881 178340.451 149319.141 163165.9299 121220.1457 169249.379 220133.1575 0.974922264 0.552145591 0.782261349 1.068841199 0.810148062 0.678312812 0.741214689 0.550667364 0.768850004 1 17.74801694 -6.14856494 6.257200168 0.719787861 0.833106814 0.057812394 0.164038052 0.619221043 30.16455031 0.054732745 0.05482032 7.10E-07 6.14856494 0.113318953 RGEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_HeLa_A486_30min_R1 3 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFSEPGTT(0.001)S(0.054)T(0.054)QRPS(0.444)S(0.444)PET(0.004)ATK;RGEGDAPFSEPGTT(0.009)S(0.009)T(0.004)QRPS(0.612)S(0.366)PETATK;RGEGDAPFSEPGTT(0.002)S(0.012)T(0.065)QRPS(0.549)S(0.371)PETATK ;; 224.58 1.08E-38 9246180000 926250 1030310 566124 441567 965460 1110200 1276840 1174820 909280 1152910 TRUE FALSE FALSE 861324.6582 948664.4833 785342.3741 1027990.292 844363.0042 973234.8117 957361.127 907339.1321 988097.1225 864213.8318 0.996656876 1.097719625 0.908736178 1.189509186 0.97703019 1.126150469 1.107782694 1.049901192 1.143347961 1 19.7210288 -5.260292177 24.99978407 1.085084565 1.010705775 0.208706887 0.074040751 173.0048524 3770082.059 0.019070186 0.030721675 5.49E-06 5.260292177 -0.07437879 RGEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_HeLa_A485_30min_R1 6 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFSEPGTTSTQRPS(0.372)S(0.627)PETATK;RGEGDAPFSEPGT(0.001)T(0.002)S(0.007)T(0.031)QRPS(0.154)S(0.797)PET(0.006)ATK;RGEGDAPFSEPGTTSTQRPS(0.169)S(0.83)PETATK;RGEGDAPFSEPGTTSTQRPS(0.36)S(0.64)PETATK;RGEGDAPFSEPGTTS(0.004)T(0.033)QRPS(0.189)S(0.773)PETATK;RGEGDAPFSEPGTT(0.006)S(0.031)T(0.031)QRPS(0.301)S(0.632)PETATK ;;;;; 263.73 1.37E-63 49642090000 6963360 5024060 4904550 10023630 8180350 5888930 8778780 6528540 6387310 13117760 TRUE FALSE FALSE 8512335.409 5611580.113 6718947.14 10571195.53 7365885.631 6197265.269 6903121.937 4927405.329 7669184.529 9847743.846 0.864394479 0.569834086 0.682282891 1.073463698 0.747976973 0.62930813 0.700985124 0.500358804 0.778775794 1 23.23136181 -6.005719776 24.9909779 0.689272909 0.790217662 0.024312539 0.170274171 779.4750123 3405721.183 0.053920219 0.059275809 9.87E-07 6.005719776 0.100944753 RGEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_HeLa_A486_30min_R1 4 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFSEPGTTSTQRPS(0.196)S(0.804)PETATK;RGEGDAPFSEPGTTSTQRPS(0.36)S(0.64)PETATK;RGEGDAPFSEPGTTSTQRPS(0.316)S(0.669)PET(0.015)ATK;RGEGDAPFSEPGT(0.072)T(0.325)S(0.048)T(0.008)QRPS(0.026)S(0.507)PET(0.014)ATK ;;; 279.4 2.01E-77 50597300000 9570980 11181830 6306380 4424450 10232230 12189850 13866940 13159600 8871650 12796420 TRUE FALSE FALSE 8900103.727 10295741.07 8748379.227 10300343.2 8948808.302 10685990.24 10397284.94 10163446.35 9640651.765 9592113.141 0.927856417 1.07335484 0.912038786 1.073834623 0.932933981 1.11403922 1.083941024 1.05956281 1.005060264 1 23.19341725 -6.262047353 24.99999966 1.05820711 0.989960234 0.234699144 0.060962414 82.01062387 3372267.668 0.01962227 0.018311545 5.47E-07 6.262047353 -0.068246876 RGEK(ac)GEVVETVEDVIVR ddPTM_HeLa_A485_30min_R1 1 RGEKGEVVETVEDVIVR 17 2 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 RGEK(1)GEVVETVEDVIVR 100.77 0.0027458 176100000 7009.6 8133.9 8381.1 7991.3 11185 9241.6 13207 18997 15039 27366 FALSE TRUE FALSE 8568.861337 9085.088849 11481.61766 8427.844484 10071.38213 9725.475886 10385.21656 14337.95596 18057.18935 20544.15983 0.417094756 0.442222458 0.558875016 0.410230671 0.490230908 0.473393702 0.505506998 0.697909093 0.878945136 1 14.32644071 -7.615481055 1.441361904 0.997953904 0.463969853 0.958698068 0.039558068 0.070596805 0.269817999 0.036113575 0.011580274 2.42E-08 7.615481055 -0.533984051 down RGEK(ac)GEVVETVEDVIVRK ddPTM_HeLa_A486_30min_R1 2 RGEKGEVVETVEDVIVRK 18 3 Q9H0E9-2;Q9H0E9-4;H7C179;H7C127;H7C128;B5MCW3;Q9H0E9 Q9H0E9-2 BRD8 Bromodomain-containing protein 8 0 1 ; RGEK(1)GEVVETVEDVIVRK;RGEK(1)GEVVETVEDVIVRK 161.65 5.23E-14 32658000 29293 29070 21036 19753.7 40929 35921 43473 42313 30497 46333 FALSE TRUE FALSE 27239.71197 26766.38733 29181.70256 45987.6119 35795.30317 31489.43224 32595.59559 32679.25359 33140.50452 34730.91522 0.784307347 0.770679009 0.840222677 1.32411172 1.0306467 0.906668656 0.938518187 0.940926934 0.954207636 1 15.08393281 -5.019523126 24.80774281 1.010243634 0.784482504 0.447559478 0.11092435 641.6538257 815341.8816 0.032150576 0.056784457 9.56E-06 5.019523126 -0.22576113 RGES(ph)LDNLDSPR ddPTM_HeLa_A485_30min_R1 1 RGESLDNLDSPR 12 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RGES(1)LDNLDSPR 90.453 0.0012509 141540000 556970 235590 173490 723550 221490 584610 340020 290750 246950 606850 TRUE FALSE FALSE 680866.055 263140.2011 237671.1705 763075.7044 199437.6779 615219.2756 267371.9493 219443.1066 296510.5998 455573.4632 1.494525274 0.577602126 0.521696696 1.674978386 0.437772816 1.350428252 0.586890965 0.481685446 0.650851342 1 18.79732419 -6.839242522 24.99999996 0.636660303 0.971995256 0.125087178 0.413866802 71.99061905 23128.53698 0.166472792 0.112235956 1.45E-07 6.839242522 0.335334954 RGES(ph)LDNLDSPR ddPTM_HeLa_A486_30min_R1 2 RGESLDNLDSPR 12 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RGES(1)LDNLDSPR;RGES(0.95)LDNLDS(0.05)PR ; 101.3 0.00057084 710210000 184934 222146 175322 75954 251872 187846 211744 243230 176231 207610 TRUE FALSE FALSE 171971.0816 204542.3419 243211.3737 176824.7505 220279.8651 164671.4704 158763.4116 187851.8387 191506.845 155623.1047 1.105048521 1.314344309 1.562823041 1.136237134 1.415470187 1.058142817 1.020178925 1.207094789 1.230581059 1 17.24769674 -6.270411567 24.95940773 1.11095415 1.311954116 0.346927334 0.139368766 780.5582762 2171401.314 0.049146915 0.043985617 5.37E-07 6.270411567 0.200999965 RGES(ph)PGLHHFHHVDD ddPTM_HeLa_A485_30min_R1 4 RGESPGLHHFHHVDD 15 1 Q5VT52-5 Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD ;;; 148.24 5.39E-08 1845400000 492408 889086 691863 452742 786296 433218 528949 591970 720224 723327 TRUE FALSE FALSE 601942.4608 993056.8737 947811.9145 477474.1491 708009.6094 455900.6246 415934.725 446788.4293 864766.3505 543014.8907 1.108519253 1.828783871 1.745462106 0.879302128 1.303849345 0.83957297 0.765972963 0.822792223 1.592527876 1 19.05063224 -5.262816522 24.99783978 1.014343326 1.587707969 0.401946143 0.296328059 114.4152635 2076875.852 0.082074107 0.129568455 5.46E-06 5.262816522 0.573364643 RGES(ph)PGLHHFHHVDD ddPTM_HeLa_A486_30min_R1 4 RGESPGLHHFHHVDD 15 1 Q5VT52-5 Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD;RGES(1)PGLHHFHHVDD ;;; 139.11 3.30E-06 1474690000 535540 337070 339050 129328 431250 325988 330118 372650 227390 389829 TRUE FALSE FALSE 498001.4115 310359.3456 470339.2401 301082.1199 377158.6038 285770.915 247518.9848 287805.7299 247100.3483 292213.281 1.704239485 1.062098699 1.609575165 1.030350567 1.290696311 0.977953206 0.847049059 0.984916664 0.845616419 1 18.15666222 -5.603767055 0.665105393 0.8937045 1.514383555 0.565631656 0.188938828 0.684555705 0.611365178 0.110119296 0.252660676 2.49E-06 5.603767055 0.620679055 RGESLDNLDS(ph)PR ddPTM_HeLa_A485_30min_R1 3 RGESLDNLDSPR 12 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RGESLDNLDS(1)PR;RGESLDNLDS(1)PR;RGES(0.476)LDNLDS(0.524)PR ;; 139 3.85E-06 2731460000 2258890 2621680 2500080 2402890 3747020 2708450 3237040 3452780 2536090 3443080 TRUE FALSE FALSE 2761372.287 2928262.67 3424963.629 2534153.796 3373953.532 2850260.254 2545419.96 2605980.291 3045060.001 2584783.521 1.06831859 1.132885074 1.325048539 0.980412393 1.305313774 1.102707531 0.984771041 1.008200598 1.178071578 1 21.30161203 -6.522247595 24.93795251 1.043486324 1.16411512 0.217605939 0.106973093 34.69003677 1370788.446 0.039000456 0.030575682 3.00E-07 6.522247595 0.120628796 RGESLDNLDS(ph)PR ddPTM_HeLa_A486_30min_R1 3 RGESLDNLDSPR 12 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RGESLDNLDS(1)PR;RGESLDNLDS(1)PR;RGES(0.002)LDNLDS(0.998)PR ;; 132.61 1.36E-05 3169480000 2131470 2299660 1648490 758420 2631460 2179780 2432620 2432770 1783680 2337590 TRUE FALSE FALSE 1982064.96 2117426.566 2286829.476 1765640.088 2301397.749 1910860.906 1823952.746 1878881.378 1938290.819 1752242.249 1.131159211 1.208409721 1.305087512 1.007646111 1.313401586 1.090523247 1.040924991 1.072272615 1.106177425 1 20.74077081 -6.500141883 23.77976745 1.061560399 1.191109051 0.378965804 0.084746347 448.6195299 469198.3252 0.028657489 0.02506356 3.16E-07 6.500141883 0.129548653 RGFCFITFK ddPTM_HeLa_A485_30min_R1 2 RGFCFITFK 9 1 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 ; ; 137.46 0.00027913 165061000 466260 528230 439430 456630 468580 549490 649440 670530 323660 618340 FALSE FALSE TRUE 569977.9284 590001.9035 601993.4432 481574.5407 421926.5299 578260.4467 510681.8386 506081.4661 388615.5932 464199.2177 1.227873522 1.27101012 1.296842865 1.037430746 0.908934168 1.245716116 1.100135069 1.090224729 0.837174167 1 18.82438457 -4.412723512 0.322910298 0.976503997 1.507015704 0.405356851 0.115707421 7.251560935 0.660043912 0.131276848 1.508830474 3.87E-05 4.412723512 0.530511707 RGFCFITFK ddPTM_HeLa_A486_30min_R1 2 RGFCFITFK 9 1 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 ; ; 175.93 3.15E-08 158060000 400840 564470 351950 164325 466240 521550 595650 536230 469300 673940 FALSE FALSE TRUE 372743.1859 519739.3414 488234.4655 382556.9045 407759.8317 457206.4637 446612.0699 414142.1348 509979.3019 505181.0374 0.73784081 1.028817994 0.966454458 0.757266952 0.807155854 0.905034888 0.884063409 0.819789549 1.009498109 1 18.94644096 -7.773357984 24.73063529 1.004749216 0.868935511 0.304496774 0.085168791 290.4915698 602736.5886 0.081330606 0.021685949 1.69E-08 7.773357984 -0.135813705 RGFEGSCS(ph)QK ddPTM_HeLa_A485_30min_R1 2 RGFEGSCSQK 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RGFEGS(0.012)CS(0.988)QK;RGFEGS(0.013)CS(0.987)QK ; 86.699 0.0022109 979160000 1655190 1678540 1197510 1880170 1387540 1522690 1988010 1590020 1167420 2206860 TRUE FALSE FALSE 2023381.305 1874830.652 1640518.782 1982878.926 1249391.646 1602415.694 1563255.423 1200065.102 1401710.486 1656730.416 1.221309928 1.131644976 0.990214682 1.196862753 0.754130928 0.967215715 0.943578634 0.7243575 0.846070352 1 20.65990744 -5.315560686 0.754725037 0.854837472 1.216872013 0.498579596 0.115162559 0.759424439 0.777187887 0.056674225 0.185103167 4.84E-06 5.315560686 0.362034541 RGFEGSCS(ph)QK ddPTM_HeLa_A486_30min_R1 4 RGFEGSCSQK 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RGFEGS(0.041)CS(0.959)QK;RGFEGS(0.199)CS(0.801)QK;RGFEGS(0.025)CS(0.975)QK;RGFEGS(0.002)CS(0.998)QK ;;; 81.789 0.0038202 1054790000 2581000 2421490 1246660 856940 1735400 2343210 2521710 2248430 1894950 3526030 TRUE FALSE FALSE 2400085.228 2229602.313 1729400.139 1994999.627 1517729.95 2054128.574 1890751.486 1736511.572 2059205.792 2643089.137 0.908060646 0.843559259 0.654310184 0.754798466 0.574225791 0.777169618 0.715356686 0.65700076 0.779090558 1 21.33379365 -8.029858774 22.33719491 1.000000003 0.73152985 0.428817638 0.091028417 840.0431974 628432.534 0.090543325 0.023378186 9.34E-09 8.029858774 -0.268470153 RGFEGSCS(ph)QKESEEGNPVR ddPTM_HeLa_A486_30min_R1 4 RGFEGSCSQKESEEGNPVR 19 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RGFEGS(0.001)CS(0.999)QKESEEGNPVR;RGFEGS(0.036)CS(0.963)QKES(0.001)EEGNPVR;RGFEGS(0.002)CS(0.996)QKES(0.002)EEGNPVR;RGFEGS(0.102)CS(0.898)QKESEEGNPVR ;;; 160.36 1.24E-12 2784280000 791730 988872 545012 497616 998090 1150150 1318400 1212640 824951 1356100 TRUE FALSE FALSE 736233.8155 910510.1813 756055.2423 1158475.196 872900.2454 1008256.187 988522.3754 936548.3437 896458.4169 1016523.733 0.724266233 0.895709713 0.74376546 1.139644022 0.858711132 0.991866844 0.972453808 0.921324621 0.881886362 1 19.95521247 -5.22579866 24.99973283 0.960084109 0.798693373 0.48365766 0.084178706 541.9562571 380147.7581 0.021582272 0.037379849 5.95E-06 5.22579866 -0.161390735 RGFS(ph)DSGGGPPAK ddPTM_HeLa_A485_30min_R1 1 RGFSDSGGGPPAK 13 1 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 0 RGFS(0.8)DS(0.2)GGGPPAK 70.26 0.029107 142910000 105800 127550 88016 116720 151440 126890 177640 219960 98313 182440 TRUE FALSE FALSE 129334.845 142465.863 120576.7811 123096.118 136362.1019 133533.7642 139685.7628 166014.4651 118043.5173 136961.0656 0.944318332 1.040192425 0.880372685 0.898767234 0.995626759 0.97497609 1.019893955 1.212128895 0.861876453 1 17.06340631 -6.618709943 2.424330693 1.04128285 0.950647132 0.114429217 0.089986687 0.53546155 6.395204891 0.038813547 0.028383646 2.41E-07 6.618709943 -0.090635718 RGFS(ph)DSGGGPPAK ddPTM_HeLa_A486_30min_R1 2 RGFSDSGGGPPAK 13 1 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 0 RGFS(0.957)DS(0.043)GGGPPAK;RGFS(0.994)DS(0.006)GGGPPAK ; 84.071 0.0017633 698830000 762480 674030 544830 262765 830180 737370 826740 765390 642360 795810 TRUE FALSE FALSE 709034.0895 620617.408 755802.7671 611730.1994 726051.0833 646400.7864 619880.9076 591127.4053 698040.282 596533.9961 1.188589576 1.040372237 1.266990267 1.025474161 1.21711602 1.083594214 1.039137604 0.990936659 1.170160102 1 19.18624483 -6.509191859 18.77600497 1.051026134 1.142458822 0.240028914 0.082380554 36.11169553 49541.91348 0.027801011 0.023413251 3.10E-07 6.509191859 0.091432688 RGFVFITFK ddPTM_HeLa_A485_30min_R1 2 RGFVFITFK 9 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 148.32 0.00011405 311240000 805740 840960 556490 703500 614170 717580 998740 916780 369510 980800 FALSE FALSE TRUE 984974.0832 939302.9566 762358.8085 741930.4236 553021.0783 755151.3792 785351.04 691938.2675 443667.2677 736304.6103 1.337726356 1.275698866 1.035385081 1.007640606 0.751076485 1.025596429 1.066611602 0.939744581 0.602559405 1 19.48994321 -4.831696569 1.627152452 0.911311257 1.360006137 0.585023069 0.131995109 0.323876953 1.552933122 0.040261837 0.164286874 1.47E-05 4.831696569 0.44869488 RGFVFITFK ddPTM_HeLa_A486_30min_R1 2 RGFVFITFK 9 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 133.81 0.00051713 246710000 534420 708660 412290 327290 561220 633710 791150 696070 524680 969440 FALSE FALSE TRUE 496959.9177 652503.2007 571939.7295 761947.6603 490826.5544 555529.3033 593195.9021 537590.0561 570159.6849 726685.914 0.683871681 0.897916401 0.787052175 1.048524054 0.675431497 0.764469618 0.816303014 0.739783235 0.784602638 1 19.47097242 -4.239697404 23.32615398 0.824181604 0.683871318 0.137289631 0.110680093 4775.360922 5123110.803 0.02681543 1.113285686 5.76E-05 4.239697404 -0.140310286 RGGGLRLPLLPPES(ph)PGPLR ddPTM_HeLa_A485_30min_R1 1 RGGGLRLPLLPPESPGPLR 19 2 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RGGGLRLPLLPPES(1)PGPLR 108.25 2.83E-05 134980000 66973 150300 65887 45743 71822 148690 155900 231250 70743 93771 TRUE FALSE FALSE 81870.9128 167876.2776 90261.34309 48241.82426 64671.1495 156475.1785 122590.6914 174535.5749 84940.47121 70395.61543 1.163011536 2.38475474 1.282201207 0.685295866 0.918681499 2.222797223 1.741453508 2.479352924 1.206615933 1 16.10319795 -6.261156411 24.99955167 1.823216562 1.314115921 0.116221652 0.581089366 53.21544449 4701581.514 0.203400786 0.191488972 5.48E-07 6.261156411 -0.50910064 RGGGLRLPLLPPES(ph)PGPLR ddPTM_HeLa_A486_30min_R1 1 RGGGLRLPLLPPESPGPLR 19 2 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;A0A669KAX5 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RGGGLRLPLLPPES(1)PGPLR 67.864 0.002795 131970000 83202 47051 46224 17592 101210 41121 47400 56729 60949 114460 TRUE FALSE FALSE 77369.96946 43322.5074 64123.17072 40955.06505 88515.29805 36047.90911 35540.01865 43813.04509 66232.10839 85798.47099 0.901763966 0.504933327 0.747369621 0.477340267 1.031665215 0.420146288 0.414226713 0.510650651 0.771949752 1 16.38866432 -8.030326608 5.843465086 0.999918742 0.621280974 0.25412413 0.198216288 0.261830544 36.76580345 0.188114975 0.0488486 9.33E-09 8.030326608 -0.378637768 RGGGS(ph)GGGEES(ph)EGEEVDED ddPTM_HeLa_A485_30min_R1 2 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 0 RGGGS(1)GGGEES(1)EGEEVDED;RGGGS(1)GGGEES(1)EGEEVDED ; 153.14 4.92E-09 1449950000 789780 867900 775900 978180 1124710 984440 1266580 1364290 848550 1341540 TRUE FALSE FALSE 965463.8363 969393.3553 1062937.698 1031615.497 1012729.923 1035983.756 995964.836 1029695.738 1018846.202 1007118.767 0.958639505 0.962541248 1.055424377 1.024323575 1.005571494 1.028660958 0.98892491 1.022417387 1.01164454 1 19.9418024 -4.680896989 9.987310277 1.01714784 0.960080161 0.635183972 0.017139677 0.217850137 25.21113187 0.004324979 0.011463211 2.08E-05 4.680896989 -0.057067679 RGGGS(ph)GGGEES(ph)EGEEVDED ddPTM_HeLa_A486_30min_R1 2 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 0 RGGGS(1)GGGEES(1)EGEEVDED;RGGGS(1)GGGEES(1)EGEEVDED ; 119.72 8.85E-06 1076000000 965170 1041090 744940 462560 1136880 1105810 1246740 1309580 830270 1263190 TRUE FALSE FALSE 897516.5671 958590.2368 1033400.718 1076863.056 994281.9094 969386.4053 934792.4653 1011417.222 902238.4721 946879.002 0.947868276 1.012368249 1.091375684 1.137276309 1.050062265 1.023770094 0.987235395 1.068158888 0.952855085 1 19.85282056 -6.389326553 3.745837968 1.007590611 1.053099855 0.132874038 0.053351081 0.55667324 13.88985472 0.021253245 0.01841488 4.08E-07 6.389326553 0.045509244 RGGGSGGGEES(ph)EGEEVDED ddPTM_HeLa_A485_30min_R1 3 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED ;; 233.44 1.11E-35 5403610000 1325160 1446340 1289920 1643200 1899810 1512000 2022000 2051200 1295180 1982890 TRUE FALSE FALSE 1619937.27 1615476.882 1767115.086 1732963.855 1710658.246 1591165.982 1589983.182 1548139.984 1555110.746 1488592.015 1.088234556 1.085238175 1.187105041 1.164163073 1.149178706 1.068906702 1.068112126 1.04000288 1.044685669 1 20.50551697 -6.535559838 1.987589106 1.037773977 1.136432251 0.656052102 0.033192717 0.233612036 1.859149942 0.016416138 0.012427408 2.91E-07 6.535559838 0.098658274 RGGGSGGGEES(ph)EGEEVDED ddPTM_HeLa_A486_30min_R1 6 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGS(0.202)GGGEES(0.798)EGEEVDED;RGGGS(0.002)GGGEES(0.998)EGEEVDED;RGGGSGGGEES(1)EGEEVDED;RGGGSGGGEES(1)EGEEVDED ;;;;; 193.72 2.60E-18 11862840000 3227616 3431254 2603589 1422111 3721903 3448354 4139290 4073280 2847847 4138347 TRUE FALSE FALSE 3001376.786 3159348.937 3611768.387 3310746.278 3255067.22 3022931.144 3103595.861 3145883.063 3094700.671 3102077.975 0.967537505 1.018462128 1.164306125 1.067267265 1.049318311 0.974485867 1.000489313 1.014121208 0.997621819 1 21.56480352 -6.141039941 5.57680114 0.998626801 1.059430467 0.259832126 0.046943478 0.342288461 14.28599314 0.016803559 0.016845579 7.23E-07 6.141039941 0.060803666 RGGHSSVSTESESSS(ph)FHSS ddPTM_HeLa_A485_30min_R1 1 RGGHSSVSTESESSSFHSS 19 1 P61073;P61073-2 P61073 CXCR4 C-X-C chemokine receptor type 4 1 0 RGGHSSVSTES(0.001)ES(0.03)S(0.204)S(0.765)FHSS 118.32 1.42E-05 54654000 13089 31613 31207 9349.5 25721 18684 22934 22382 25677 19806 TRUE FALSE FALSE 16000.60289 35309.86535 42751.76793 9860.239511 23160.12693 19662.26535 18033.96355 16892.77941 30830.13838 14868.7287 1.076124477 2.374773665 2.87528065 0.66315283 1.557640024 1.322390484 1.212878647 1.136128027 2.073488527 1 13.85999368 -5.265863292 24.99999515 1.296919718 2.135330994 0.329491113 0.540481177 425.6395025 2405335.513 0.149133744 0.23004224 5.42E-06 5.265863292 0.838411275 RGGIPAS(ph)PIDPFQSR ddPTM_HeLa_A485_30min_R1 4 RGGIPASPIDPFQSR 15 1 Q96LD4-2;Q96LD4 Q96LD4-2 TRIM47 Tripartite motif-containing protein 47 1 0 RGGIPAS(1)PIDPFQSR;RGGIPAS(1)PIDPFQSR;RGGIPAS(1)PIDPFQSR;RGGIPAS(1)PIDPFQSR ;;; 119.37 5.18E-05 920880000 396715 528528 456777 345766 558653 498501 625961 646136 396523 499773 TRUE FALSE FALSE 484962.8831 590334.752 625757.8204 364654.3211 503031.5458 524601.7415 492219.3187 487670.1329 476101.529 375188.7887 1.292583621 1.573433881 1.667847865 0.971922222 1.340742476 1.398234055 1.311924379 1.299799321 1.268965234 1 18.51725719 -13.37552268 0.096738564 2.06E-09 1.61844355 0.311465019 0.169772597 214.870091 1.620624855 45.61921778 3.467409346 4.21E-14 13.37552268 1.618443548 RGGIPAS(ph)PIDPFQSR ddPTM_HeLa_A486_30min_R1 3 RGGIPASPIDPFQSR 15 1 Q96LD4-2;Q96LD4 Q96LD4-2 TRIM47 Tripartite motif-containing protein 47 1 0 RGGIPAS(1)PIDPFQSR;RGGIPAS(1)PIDPFQSR;RGGIPAS(1)PIDPFQSR ;; 116.21 8.15E-05 633940000 627590 598291 480665 190184 727730 551892 660690 643110 504695 620400 TRUE FALSE FALSE 583599.1819 550880.2422 666791.3607 442757.9634 636451.3176 483805.1763 495378.3739 496687.892 548442.369 465047.8019 1.254922998 1.18456692 1.43381252 0.952069791 1.368571822 1.040334293 1.065220332 1.06803621 1.17932472 1 18.82701949 -5.97916538 0.849528141 1.071235499 1.261602269 0.244999336 0.131425231 0.912578556 1.452158353 0.072158961 0.092226512 1.05E-06 5.97916538 0.19036677 RGGS(ph)GYHS(ph)RS(ph)PARQESSR ddPTM_HeLa_A485_30min_R1 1 RGGSGYHSRSPARQESSR 18 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 RGGS(0.788)GY(0.225)HS(0.987)RS(0.917)PARQES(0.066)S(0.017)R 56.681 0.022142 1193800000 52492 107900 139080 69636 311130 210720 315230 586850 149910 111630 TRUE FALSE FALSE 64168.6643 120517.9664 190531.4796 73440.03835 280152.8048 221752.9734 247878.5353 442924.1174 179995.5619 83802.6954 0.765711222 1.438115634 2.273572213 0.876344585 3.343004702 2.646131754 2.957882609 5.28532066 2.147849315 1 16.35470903 -5.767559453 24.99950602 3.101495295 1.412351285 0.319513685 1.087609222 160.1709133 654271.1819 0.326242782 0.379287413 1.71E-06 5.767559453 -1.68914401 RGHHDDS(ph)DEEASPEK ddPTM_HeLa_A485_30min_R1 2 RGHHDDSDEEASPEK 15 1 Q5VT06;H0Y6Q4 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 RGHHDDS(1)DEEASPEK;RGHHDDS(0.959)DEEAS(0.041)PEK ; 105.46 0.00025831 693620000 524830 535320 445980 676550 695720 602620 755710 786350 560830 877540 TRUE FALSE FALSE 641576.6229 597921.0173 610966.5608 713508.2134 626451.674 634172.2514 594246.3849 593496.4296 673383.4368 658785.4279 0.973877982 0.907611177 0.927413593 1.083066175 0.950919142 0.962638553 0.902033287 0.900894896 1.022158973 1 19.32944912 -4.612156229 0.00282482 1.907687049 5.19E-05 0.021684831 0.055475393 561956.9112 277.5879502 92022.09393 95455.84744 2.44E-05 4.612156229 -1.907635111 RGHHDDS(ph)DEEASPEK ddPTM_HeLa_A486_30min_R1 2 RGHHDDSDEEASPEK 15 1 Q5VT06;H0Y6Q4 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 RGHHDDS(1)DEEASPEK;RGHHDDS(0.999)DEEAS(0.001)PEK ; 107.98 0.0002248 441910000 676290 771350 772150 289750 1137590 849300 876790 989250 740020 783480 TRUE FALSE FALSE 628885.5634 710225.4168 1071147.159 674552.6432 994902.8546 744522.001 657407.8683 764019.3702 804165.5294 587291.5084 1.070823525 1.20932349 1.823876463 1.14858232 1.694052852 1.267721379 1.119389364 1.300920172 1.369278319 1 19.16371725 -6.505683843 24.72871429 1.218342428 1.39917662 0.125902288 0.236863942 1465.402412 2107463.298 0.083960554 0.072327499 3.12E-07 6.505683843 0.180834192 RGHT(ph)ASESDEQQWPEEK ddPTM_HeLa_A486_30min_R1 1 RGHTASESDEQQWPEEK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RGHT(0.442)AS(0.442)ES(0.116)DEQQWPEEK 121.26 3.44E-05 185390000 119860 140450 81715 42868 123160 110570 154040 145410 103970 163200 TRUE FALSE FALSE 111458.433 129320.2305 113357.2364 99798.87043 107712.1244 96928.99759 115497.5627 112303.3173 112982.2033 122333.6577 0.91110194 1.057110797 0.926623453 0.815792418 0.880478246 0.792333029 0.944119263 0.918008333 0.923557796 1 16.90046186 -4.992225337 24.74982956 0.888470075 0.986046598 0.213601886 0.065493876 207.7539914 661348.237 0.016725623 0.03471035 1.02E-05 4.992225337 0.097576524 RGIAIAYEDEGS(ph)G ddPTM_HeLa_A485_30min_R1 1 RGIAIAYEDEGSG 13 1 H0YCR5;Q9BQC3-2;Q9BQC3-3;Q9BQC3 H0YCR5 DPH2 Diphthamide biosynthesis protein 2 1 0 RGIAIAYEDEGS(1)G 105.4 0.001143 84046000 120670 158100 149030 113730 171140 129360 170340 199860 138870 163650 TRUE FALSE FALSE 147512.6252 176588.4197 204162.3987 119942.7819 154100.7007 136133.0896 133945.4675 150844.0216 166739.9352 122855.0668 1.200704449 1.437371892 1.661815048 0.976294955 1.254329225 1.108078756 1.090272229 1.227820924 1.357208454 1 16.90659783 -5.267652941 24.99991201 1.155104787 1.433704606 0.436321274 0.149920359 471.8644349 1898519.762 0.042000234 0.064091564 5.40E-06 5.267652941 0.27859982 RGILTLK ddPTM_HeLa_A485_30min_R1 4 RGILTLK 7 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;; ;;; 160.54 0.0007208 3834550000 2390800 2727550 2283930 2421390 3316500 2857450 3980990 4325400 2431840 3295690 FALSE FALSE TRUE 2922625.212 3046513.246 3128850.749 2553664.404 2986297.615 3007061.664 3130418.965 3264588.868 2919887.982 2474135.136 1.181271455 1.231344724 1.264624031 1.03214427 1.207006672 1.215399119 1.265257875 1.319486887 1.180165117 1 21.23849287 -5.985717992 24.99085407 1.219337682 1.178954607 0 0.096664454 980.4757807 1715642.892 0.029578721 0.033522942 1.03E-06 5.985717992 -0.040383076 RGILTLK ddPTM_HeLa_A486_30min_R1 4 RGILTLK 7 1 C9JUM1;C9JZR7;C9JTX5;P60709;A0A2R8Y793;Q6S8J3;G5E9R0;E7EVS6;A0A2R8YGF8;A5A3E0;P0CG38;P0CG39;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65;P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 C9JUM1;P60709;P63261;P68133 ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG1;ACTA1;ACTC1;ACTG2;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;; ;;; 160.54 0.00067604 3231130000 1500950 1716690 1223170 721070 2584760 1673020 2023270 2038690 1396790 1824260 FALSE FALSE TRUE 1395741.156 1580653.232 1696814.182 1678687.401 2260555.299 1466619.802 1517026.446 1574524.791 1517864.882 1367453.422 1.020686433 1.155910108 1.240857022 1.227601155 1.653113197 1.072519019 1.109380708 1.151428462 1.109993845 1 20.38306026 RGLAPNT(ph)PGK ddPTM_HeLa_A485_30min_R1 3 RGLAPNTPGK 10 1 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 RGLAPNT(1)PGK;RGLAPNT(1)PGK;RGLAPNT(1)PGK ;; 84.297 0.00425 2707410000 5499700 5347000 3923920 7419600 7062000 6237200 9460000 8886900 4825910 9647400 TRUE FALSE FALSE 6723089.291 5972285.137 5375541.296 7824913.961 6358882.484 6563770.147 7438793.719 6707373.841 5794425.871 7242480.727 0.928285424 0.824618713 0.742223763 1.080419024 0.877997847 0.906287555 1.027105767 0.926115525 0.800060931 1 22.78805251 -5.244313724 24.9829496 0.941311121 0.831000257 0.270372643 0.085416784 1154.828369 1684664.243 0.02306086 0.039806444 5.70E-06 5.244313724 -0.110310864 RGLAPNT(ph)PGK ddPTM_HeLa_A486_30min_R1 3 RGLAPNTPGK 10 1 O43663-2;O43663-4;O43663;O43663-3;G3V3N7;H0YL53 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 RGLAPNT(1)PGK;RGLAPNT(1)PGK;RGLAPNT(1)PGK ;; 79.886 0.0066761 2533600000 6529850 6482180 3627850 3438350 6277910 7323880 9375600 8968900 5204320 10163900 TRUE FALSE FALSE 6072141.235 5968508.449 5032650.677 8004652.565 5490475.989 6420334.149 7029725.715 6926877.26 5655434.648 7618793.284 0.796995142 0.783392885 0.660557452 1.050645721 0.72064903 0.842696988 0.922682301 0.90918299 0.742300577 1 22.86113108 -13.99999964 0.056034807 1.59486441 0.555754548 0.200824333 0.106738256 740.828682 3.041374043 63.59833119 11.88402146 1.00E-14 13.99999964 -1.039109862 RGLDDDRGPRR ddPTM_HeLa_A485_30min_R1 2 RGLDDDRGPRR 11 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 61.435 0.018013 29208000 9301.2 21440 15432.6 4143.8 19412.5 21097.5 18145.3 34899 12607.7 8374 FALSE FALSE TRUE 11370.21985 23947.2215 21141.76094 4370.165301 17479.72334 22202.13248 14268.40842 26339.96553 15137.94975 6286.515912 1.808667951 3.809299433 3.363033076 0.695164915 2.780510474 3.531707036 2.269684611 4.189914716 2.408003091 1 12.61804496 -5.981998885 24.99555806 2.887208794 2.479782038 0 1.116599895 1157.369068 1607064.076 0.344063226 0.390068015 1.04E-06 5.981998885 -0.407426756 RGLDDDRGPWR ddPTM_HeLa_A485_30min_R1 3 RGLDDDRGPWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;; ;; 78.908 0.0064315 318571000 65473 131273 105926 45486 139104 129194 145742 225564 76961 66389 FALSE FALSE TRUE 80037.24297 146624.2354 145112.4353 47970.785 125254.3173 135958.3981 114603.0311 170244.0753 92406.36677 49839.4441 1.605901599 2.941931598 2.911598192 0.962506422 2.513156388 2.727927659 2.299444409 3.415850205 1.854081008 1 15.60500036 RGLDEDR ddPTM_HeLa_A486_30min_R1 1 RGLDEDR 7 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 60.91 0.011754 0 53321 56631 50303 19885 80135 50774 61745 47445 63514 50220 FALSE FALSE TRUE 49583.47325 52143.35331 69781.66876 46293.28493 70083.72107 44510.02011 46295.74793 36642.80922 69019.44466 37644.58512 1.317147555 1.385148837 1.853697379 1.229746185 1.86172117 1.1823751 1.229811612 0.973388579 1.83344947 1 15.20015474 -6.352979525 24.9900288 1.241265957 1.522897419 0.192343743 0.292527872 105.5738426 28816.2537 0.098065682 0.086485804 4.44E-07 6.352979525 0.281631463 RGLKPSCTIIPLMK(ac)K ddPTM_HeLa_A485_30min_R1 1 RGLKPSCTIIPLMKK 15 3 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 RGLKPSCTIIPLMK(1)K 101.89 0.0018422 20585000 31677 37558 32476 34506 47267 38917 50850 64631 31994 47931 FALSE TRUE FALSE 38723.43937 41950.08139 44490.22384 36390.97541 42560.93152 40954.63394 39985.48209 48780.14591 38414.90233 35982.6838 1.076168736 1.165840814 1.236434283 1.011346891 1.182817039 1.13817619 1.11124235 1.355656131 1.067594139 1 15.13501518 RGLKPSCTIIPLMK(ac)K ddPTM_HeLa_A486_30min_R1 1 RGLKPSCTIIPLMKK 15 3 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 RGLKPSCTIIPLMK(1)K 113.63 0.00066107 19051000 34696 27582 21504 13819 38566 31686 38709 37371 27033 46899 FALSE TRUE FALSE 32263.98957 25396.30187 29830.9247 32171.33037 33728.69267 27776.90348 29023.59878 28862.4391 29376.24221 35155.18514 0.917759057 0.722405579 0.848549782 0.915123338 0.959422985 0.79012252 0.825585149 0.821000913 0.8356162 1 15.10144987 -11.2304956 2.22087233 1.498189335 0.846734316 0.328042658 0.065053243 7257120.593 1116521.317 18198169.31 0.016981988 5.88E-12 11.2304956 -0.651455019 RGLLSNHT(ph)GSPR ddPTM_HeLa_A486_30min_R1 1 RGLLSNHTGSPR 12 1 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 RGLLSNHT(0.5)GS(0.5)PR 69.261 0.011016 199750000 292740 271520 261920 61785 299010 246630 268210 284610 236840 250020 TRUE FALSE FALSE 272220.4377 250003.7663 363342.4385 143838.6024 261505.3776 216203.2982 201101.0212 219810.516 257369.4819 187413.3646 1.452513476 1.333969788 1.938722135 0.767493838 1.395340072 1.153617292 1.073034581 1.17286468 1.373271764 1 17.51586431 -5.261888812 24.9999984 1.150071814 1.550958578 0.451599058 0.221915602 38.99873389 2169375.124 0.059296123 0.094395554 5.47E-06 5.261888812 0.400886764 RGLLSNHTGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 RGLLSNHTGSPR 12 1 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 RGLLSNHT(0.344)GS(0.656)PR;RGLLSNHT(0.006)GS(0.994)PR;RGLLSNHT(0.017)GS(0.983)PR;RGLLSNHT(0.009)GS(0.991)PR ;;; 137.21 6.60E-06 1788570000 782620 1639100 1602130 452868 1707640 1182670 1421980 1641540 1289850 908450 TRUE FALSE FALSE 956711.119 1830778.487 2194824.557 477607.0321 1537621.366 1244592.772 1118162.356 1238949.741 1548711.064 681990.1338 1.402822521 2.684464769 3.218264383 0.700313697 2.254609399 1.824942489 1.639557966 1.81666813 2.270870189 1 19.37939134 -5.249264025 24.98396049 1.710694282 2.460111857 0.247001314 0.625134433 1132.885965 2324690.667 0.165906144 0.284653698 5.63E-06 5.249264025 0.749417575 RGLLSNHTGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RGLLSNHTGSPR 12 1 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 RGLLSNHT(0.039)GS(0.961)PR;RGLLSNHT(0.084)GS(0.916)PR ; 109.07 0.00026905 561300000 796130 806770 805430 50238 918260 553360 625820 647390 723120 295120 TRUE FALSE FALSE 740325.3982 742838.607 1117314.066 116956.6029 803083.2684 485092.0694 469233.2168 499993.4294 785800.6238 221220.0311 3.346556795 3.357917469 5.050691208 0.528689027 3.630246612 2.192803549 2.121115409 2.260163453 3.552122382 1 17.7551225 -5.248023864 24.99957422 2.294156192 3.862341239 0.380539213 1.006645805 883.9524937 1647227.13 0.260412504 0.447801683 5.65E-06 5.248023864 1.568185047 RGLLYDS(ph)DEEDEERPAR ddPTM_HeLa_A485_30min_R1 7 RGLLYDSDEEDEERPAR 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR ;;;;;; 272.41 1.85E-59 46471600000 2495080 3545780 3240760 2873270 4453580 3689770 4881880 6064860 3120230 3633570 TRUE FALSE FALSE 3050101.938 3960428.127 4439651.983 3030229.465 4010165.938 3882960.652 3838826.457 4577443.576 3746431.541 2727787.87 1.118159506 1.45188274 1.62756497 1.110874309 1.470116493 1.423483363 1.407303881 1.678079013 1.373432143 1 21.37930002 -8.039355448 23.2335814 0.999999994 1.418910287 0.332888817 0.173178313 3580.521981 2113766.901 0.164515951 0.042477836 9.13E-09 8.039355448 0.418910294 RGLLYDS(ph)DEEDEERPAR ddPTM_HeLa_A486_30min_R1 6 RGLLYDSDEEDEERPAR 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR ;;;;; 279.77 1.05E-59 41862900000 3873120 3916970 3207240 1687708 5005650 3906480 4893220 5206980 2906400 4576940 TRUE FALSE FALSE 3601634.289 3606575.032 4449169.221 3929069.516 4377794.701 3424538.216 3668884.601 4021464.322 3158329.092 3430844.433 1.049780705 1.051220801 1.29681462 1.145219375 1.276010844 0.998161905 1.069382385 1.172150006 0.920569018 1 21.71013228 -6.282845663 24.99151406 1.045145144 1.163910782 0.314363264 0.096325667 1166.527457 1361898.702 0.034539878 0.030494589 5.21E-07 6.282845663 0.118765638 RGLLYDS(ph)DEEDEERPARK ddPTM_HeLa_A485_30min_R1 5 RGLLYDSDEEDEERPARK 18 3 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK ;;;; 264.8 4.27E-58 7196140000 1808410 1835000 1303280 1761440 2330890 2247830 3077700 3431570 1631320 2283210 TRUE FALSE FALSE 2210684.566 2049587.288 1785417.506 1857663.007 2098818.407 2365522.903 2420124.253 2589972.077 1958710.961 1714047.766 1.289745017 1.195758559 1.041638128 1.083787187 1.224480699 1.380079919 1.411935128 1.51102678 1.142740009 1 20.70897588 -6.032652078 5.015917721 1.327435421 1.147859795 0.13170164 0.149298692 0.290259395 18.80258846 0.048578382 0.05061033 9.28E-07 6.032652078 -0.179575626 RGLLYDS(ph)DEEDEERPARK ddPTM_HeLa_A486_30min_R1 6 RGLLYDSDEEDEERPARK 18 3 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK;RGLLYDS(1)DEEDEERPARK ;;;;; 221.83 1.93E-34 3906040000 1519459 1206672 724345 643685 1448429 1355404 1805140 1887200 929580 1912487 TRUE FALSE FALSE 1412952.771 1111050.916 1004830.783 1498531.21 1266753.529 1188188.035 1353474.879 1457525.757 1010156.743 1433587.807 0.985606018 0.775014206 0.700920291 1.045301308 0.883624653 0.828821248 0.944117181 1.016697931 0.704635417 1 20.45119884 -5.255744769 24.99948897 0.914285592 0.815963589 0.129793393 0.114794648 990.1722769 4346869.423 0.030785177 0.051519452 5.55E-06 5.255744769 -0.098322003 RGMDDDRGPRR ddPTM_HeLa_A485_30min_R1 2 RGMDDDRGPRR 11 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 68.536 0.0096589 30217000 13312.4 29407 19903.3 10283.7 22751.3 27585 26622 54708 14971.3 11699.6 FALSE FALSE TRUE 16273.69745 32845.89284 27266.35892 10845.47249 20486.10069 29029.30795 20933.99222 41290.77722 17975.90259 8783.105035 1.852841038 3.739667545 3.104409979 1.234810747 2.332444005 3.305130455 2.383438674 4.701159448 2.046645521 1 13.10051534 -6.236061553 23.85939235 2.899607705 2.492856018 0 1.093576172 1986.825815 1867946.554 0.355702266 0.355532293 5.81E-07 6.236061553 -0.406751687 RGNDPLT(ph)SS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RGNDPLT(0.85)S(0.159)S(0.991)PGR 112.02 0.030137 859960000 293180 335960 277510 103160 385210 293040 318850 348150 285460 296120 TRUE FALSE FALSE 272629.596 309337.3061 384969.304 240161.6934 336893.3699 256887.7042 239070.3575 268883.8451 310203.9026 221969.6246 1.228229297 1.39360197 1.734333266 1.08195747 1.517745369 1.157310171 1.07704087 1.211354236 1.397506092 1 17.76000274 -6.28060579 24.1194166 1.176126795 1.393194158 0.262256067 0.186390253 771.2359574 970535.9579 0.064881394 0.05731691 5.24E-07 6.28060579 0.217067362 RGNDPLT(ph)SSPGR ddPTM_HeLa_A485_30min_R1 3 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.333)S(0.333)S(0.333)PGR;RGNDPLT(0.397)S(0.397)S(0.205)PGR;RGNDPLT(0.399)S(0.399)S(0.201)PGR ;; 70.009 0.016112 492196000 164052 246013 239519 174477 280114 246832 272513 316336 212082 232562 TRUE FALSE FALSE 200544.8014 274782.0803 328127.0453 184008.2367 252224.8666 259755.7418 214288.3713 238754.1 254644.9121 174588.5734 1.14867083 1.573883531 1.879430245 1.053953493 1.444681411 1.487816395 1.227390586 1.367524205 1.458542831 1 17.41359961 -12.47009303 0.235570394 3.98E-10 1.46182844 0.227165035 0.221382856 112.4682343 2.151623749 55.01605757 0.380393424 3.39E-13 12.47009303 1.461828439 RGNDPLT(ph)SSPGR ddPTM_HeLa_A486_30min_R1 1 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.782)S(0.109)S(0.109)PGR 62.377 0.021572 405140000 124410 154680 130120 49524 169090 121330 135230 152370 116430 134390 TRUE FALSE FALSE 115689.5015 142422.5935 180505.9487 115294.3748 147881.1555 106361.5382 101394.0237 117678.6772 126522.2461 100737.8693 1.148421168 1.413793983 1.791838065 1.144498843 1.467979783 1.055824775 1.006513483 1.168167225 1.255955154 1 16.6202466 -6.263652264 24.72481462 1.102128904 1.402762583 0.393417688 0.183544194 185.3755059 2071208.296 0.064084304 0.059282316 5.45E-07 6.263652264 0.300633679 RGNDPLTS(ph)S(ph)PGR ddPTM_HeLa_A485_30min_R1 1 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RGNDPLT(0.428)S(0.586)S(0.986)PGR 97.223 0.00065248 877650000 592260 756960 724740 626980 948260 728340 934150 923120 689090 800020 TRUE FALSE FALSE 724006.1937 845479.8873 992851.4849 661230.3298 853847.9049 766474.7562 734561.2212 696723.3726 827384.0423 600589.7373 1.205492117 1.407749475 1.653127623 1.100968413 1.421682476 1.276203552 1.223066555 1.160065398 1.377619348 1 19.1960203 -11.55892888 0.148739367 0.468880876 1.449706888 0.30040473 0.149324417 68.09973569 1.216922921 12.78957107 0.895873438 2.76E-12 11.55892888 0.980826011 RGNDPLTS(ph)S(ph)PGR ddPTM_HeLa_A486_30min_R1 1 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RGNDPLT(0.409)S(0.593)S(0.998)PGR 115.83 0.00012162 902140000 1532100 1781700 1279800 548970 1836400 1512900 1673700 1766600 1394100 1631900 TRUE FALSE FALSE 1424707.702 1640511.603 1775372.834 1278029.903 1606061.588 1326253.78 1254922.557 1364383.745 1514941.71 1223261.618 1.164679477 1.341096278 1.451343529 1.04477234 1.312933852 1.084194714 1.025882394 1.11536545 1.238444571 1 20.22230155 -5.779195994 1.241623844 1.101497568 1.303316601 0.312826219 0.119741159 0.553240682 1.797010479 0.048867089 0.069277105 1.66E-06 5.779195994 0.201819032 RGNDPLTS(ph)SPGR ddPTM_HeLa_A486_30min_R1 2 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.06)S(0.576)S(0.364)PGR;RGNDPLT(0.082)S(0.459)S(0.459)PGR ; 98.694 0.00071912 28217000000 692390 816000 673900 258630 897610 720820 856920 841990 655600 817400 TRUE FALSE FALSE 643857.0365 751337.1882 934852.1277 602103.7104 785023.3839 631892.5572 642509.5524 650287.2575 712427.9359 612717.7196 1.050821636 1.226237081 1.525746845 0.982677163 1.281215409 1.031294733 1.048622444 1.061316226 1.162734344 1 19.22486305 -6.010009066 1.441630269 1.065601918 1.236713748 0.189464002 0.143842431 0.673222058 2.86937865 0.059381488 0.065957294 9.77E-07 6.010009066 0.17111183 RGNDPLTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 9 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.109)S(0.109)S(0.783)PGR;RGNDPLT(0.005)S(0.014)S(0.981)PGR;RGNDPLT(0.045)S(0.107)S(0.848)PGR;RGNDPLT(0.035)S(0.165)S(0.8)PGR;RGNDPLT(0.063)S(0.213)S(0.724)PGR;RGNDPLT(0.008)S(0.267)S(0.725)PGR;RGNDPLT(0.013)S(0.148)S(0.838)PGR;RGNDPLT(0.008)S(0.068)S(0.924)PGR;RGNDPLT(0.18)S(0.126)S(0.694)PGR ;;;;;;;; 171.51 3.32E-10 65729760000 3103906 4111090 3911610 3601736 4635780 4015696 4985820 5492820 3691047 4553420 TRUE FALSE FALSE 3794359.181 4591846.214 5358677.315 3798489.718 4174225.466 4225951.633 3920558.827 4145697.283 4431806.277 3418336.193 1.110001757 1.343298597 1.567627352 1.111210104 1.221127832 1.236259804 1.146920199 1.212782198 1.296480517 1 21.70486286 -5.341895486 24.99999534 1.187143003 1.340655958 0.256600338 0.127793085 144.141117 44787.29232 0.035701028 0.052953184 4.55E-06 5.341895486 0.153512955 RGNDPLTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 5 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.135)S(0.135)S(0.729)PGR;RGNDPLT(0.018)S(0.092)S(0.89)PGR;RGNDPLT(0.054)S(0.191)S(0.755)PGR;RGNDPLT(0.065)S(0.162)S(0.773)PGR;RGNDPLT(0.049)S(0.192)S(0.759)PGR ;;;; 114.63 0.00017256 35488640000 1626110 1794130 1498430 704138 2011790 1624000 1760780 1899710 1593380 1910300 TRUE FALSE FALSE 1512128.086 1651956.605 2078662.225 1639268.849 1759452.539 1423647.392 1320214.22 1467187.503 1731495.461 1431948.446 1.055993385 1.153642514 1.451632027 1.14478203 1.228712209 0.994202966 0.921970497 1.024609166 1.209188408 1 20.44954812 -6.258469825 24.76621766 1.024780795 1.214130177 0.36379069 0.116713403 258.6228927 2156930.853 0.040949507 0.039287407 5.51E-07 6.258469825 0.189349383 RGPDRGS(ph)PEYR ddPTM_HeLa_A485_30min_R1 5 RGPDRGSPEYR 11 2 P49716 P49716 CEBPD CCAAT/enhancer-binding protein delta 1 0 RGPDRGS(1)PEYR;RGPDRGS(1)PEYR;RGPDRGS(1)PEYR;RGPDRGS(1)PEYR;RGPDRGS(1)PEYR ;;;; 117.08 0.00020759 1659317000 675070 1022309 962097 716413 1274860 979031 1157715 1309093 831313 918778 TRUE FALSE FALSE 825236.9925 1141859.145 1318016.716 755548.8281 1147930.462 1030291.549 910359.7326 988035.8892 998149.8938 689743.5535 1.196440312 1.655483605 1.910879355 1.095405422 1.664285888 1.493731321 1.31985247 1.432468465 1.447131892 1 19.39570054 -11.23794444 0.25619552 0.382493372 1.539555773 0.286740128 0.224109793 46.55525397 1.610464068 16.84051125 0.327559163 5.78E-12 11.23794444 1.157062401 RGPDRGS(ph)PEYR ddPTM_HeLa_A486_30min_R1 4 RGPDRGSPEYR 11 2 P49716 P49716 CEBPD CCAAT/enhancer-binding protein delta 1 0 RGPDRGS(1)PEYR;RGPDRGS(1)PEYR;RGPDRGS(1)PEYR;RGPDRGS(1)PEYR ;;; 117.08 0.00020759 1295664000 441032 480579 448994 181263 599958 440474 482439 537268 368700 452265 TRUE FALSE FALSE 410117.9343 442496.1698 622856.5013 421989.4245 524705.6733 386132.7963 361727.6595 414943.8049 400659.2129 339014.9002 1.209734245 1.305241066 1.837254058 1.244751851 1.547736317 1.138984735 1.066996345 1.223969225 1.181833638 1 18.37098916 -6.276896563 23.50657215 1.13289477 1.434522188 0.429650985 0.176350986 379.4496672 577047 0.062118158 0.055020091 5.29E-07 6.276896563 0.301627417 RGPEEDRFS(ph)R ddPTM_HeLa_A485_30min_R1 1 RGPEEDRFSR 10 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RGPEEDRFS(1)R 65.092 0.014252 580440000 40770 59393 47705 67150 75249 64736 89440 111080 52113 75573 TRUE FALSE FALSE 49839.14585 66338.4947 65353.06467 70818.23447 67756.94534 68125.47686 70330.41334 83837.45583 62571.60109 56734.04192 0.87846986 1.169289063 1.151919773 1.248249412 1.194290818 1.200786592 1.239651027 1.477727534 1.102893412 1 15.79192703 -3.66131081 1.203628485 1.227422902 5.47E-15 0.394734987 0.116903894 5.20479107 2.314202849 0.033407984 11.34736488 0.000218117 3.66131081 -1.227422902 RGPEVTSQGVQTS(ph)SPACK ddPTM_HeLa_A485_30min_R1 3 RGPEVTSQGVQTSSPACK 18 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB05;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQT(0.057)S(0.471)S(0.471)PACK;RGPEVTSQGVQT(0.036)S(0.56)S(0.404)PACK;RGPEVTSQGVQT(0.009)S(0.711)S(0.28)PACK ;; 201.14 1.35E-20 1184810000 1437515 1613132 1397526 1494190 1801920 1549950 1771970 1853190 1538779 1886420 TRUE FALSE FALSE 1757285.252 1801773.755 1914529.023 1575813.816 1622514.518 1631102.985 1393374.134 1398692.247 1847597.831 1416170.211 1.240871499 1.272286157 1.351906013 1.112729108 1.145705866 1.151770439 0.98390301 0.987658289 1.304643903 1 20.43356324 -5.328635614 6.686781745 1.096142663 1.28637266 0.459689353 0.094557491 0.21748469 18.04602685 0.026876603 0.040182189 4.69E-06 5.328635614 0.190229997 RGPEVTSQGVQTSS(ph)PACK ddPTM_HeLa_A486_30min_R1 2 RGPEVTSQGVQTSSPACK 18 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB05;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQT(0.007)S(0.016)S(0.978)PACK;RGPEVTSQGVQTS(0.001)S(0.998)PACK ; 201.24 1.96E-25 2216140000 1975410 2053700 1158610 740330 1669810 1932800 2165100 2009310 1588620 2277200 TRUE FALSE FALSE 1836943.96 1890957.333 1607254.821 1723525.654 1460366.859 1694350.787 1623369.08 1551833.976 1726322.861 1706974.298 1.076140374 1.107783131 0.941581149 1.009696313 0.855529495 0.992604745 0.951021396 0.90911385 1.011335005 1 20.70300991 -4.762132303 24.99905875 0.954664693 1.091961789 0.558209015 0.047246694 11.27302218 406772.7206 0.011587217 0.026667015 1.73E-05 4.762132303 0.137297096 RGPEVTSQGVQTSS(ph)PACKQEK ddPTM_HeLa_A485_30min_R1 2 RGPEVTSQGVQTSSPACKQEK 21 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB05;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQT(0.032)S(0.032)S(0.936)PACKQEK;RGPEVTSQGVQT(0.001)S(0.02)S(0.979)PACKQEK ; 181.24 1.91E-19 485430000 250426 192303 157585 426260 395700 292380 464470 467390 250482 616400 TRUE FALSE FALSE 306132.3997 214791.163 215882.2492 449545.5045 356302.7186 307688.5647 365232.1901 352761.8697 300751.4398 462742.824 0.661560556 0.464169625 0.466527492 0.971480229 0.769979998 0.664923471 0.789276832 0.762328126 0.649932153 1 18.81985109 -5.404890192 0.073665054 1.320463527 4.34E-16 0.359855885 0.136669539 85.21754802 1.555321399 9.552728607 18.72011759 3.94E-06 5.404890192 -1.320463527 RGPEVTSQGVQTSS(ph)PACKQEK ddPTM_HeLa_A486_30min_R1 2 RGPEVTSQGVQTSSPACKQEK 21 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB05;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQT(0.001)S(0.141)S(0.858)PACKQEK;RGPEVTSQGVQT(0.057)S(0.203)S(0.741)PACKQEK ; 189.2 9.41E-20 400440000 326050 352010 181957 239170 413010 496160 647140 645220 279870 558900 TRUE FALSE FALSE 303195.5787 324115.4456 252415.6234 556799.847 361206.4346 434948.8238 485218.7273 498317.4911 304129.3569 418947.8022 0.72370729 0.773641594 0.60249898 1.329043485 0.86217527 1.038193354 1.158184205 1.189450066 0.725936156 1 18.67641098 -5.241586811 24.99760466 1.048206287 0.707318499 0.480329949 0.163541653 697.2054714 877893.7453 0.042831536 0.074055757 5.73E-06 5.241586811 -0.340887788 RGPGT(ph)PGPVAR ddPTM_HeLa_A486_30min_R1 1 RGPGTPGPVAR 11 1 Q8N6S5 Q8N6S5 ARL6IP6 ADP-ribosylation factor-like protein 6-interacting protein 6 1 0 RGPGT(1)PGPVAR 69.716 0.0055142 0 29524 35659 27948 8419 36080 27552 20334 23696 34749 25031 TRUE FALSE FALSE 27454.52006 32833.25097 38770.21407 19599.85747 31554.50997 24152.91437 15246.21813 18300.93808 37761.0713 18763.07468 1.463220743 1.749886495 2.066303884 1.044597317 1.681734498 1.287257807 0.812565019 0.97536989 2.01252044 1 14.19560864 -5.268029508 24.99416685 1.258294255 1.75881199 0.284757735 0.363607753 674.535486 2558288.509 0.103180561 0.157078511 5.39E-06 5.268029508 0.500517734 RGPGYTSGTNSEASNAS(ph)ET(ph)ESDHRDELSDWSLAPTEEER ddPTM_HeLa_A485_30min_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEER 39 2 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 2 0 RGPGYTSGTNSEAS(0.004)NAS(0.99)ET(0.575)ES(0.43)DHRDELSDWSLAPTEEER 172.99 1.90E-14 754630000 77639 105760 83905 84301 93712 97120 111060 114360 77733 89458 TRUE FALSE FALSE 94909.5277 118127.712 114944.9511 88906.15017 84381.70424 102205.053 87331.12372 86313.03069 93333.30009 67157.76695 1.413232333 1.758958306 1.711566008 1.323840178 1.256469774 1.521864971 1.300387545 1.285227824 1.389761815 1 16.03526664 -4.7120118 0.049137809 3.23E-08 3.109000549 0.54630534 0.142949328 164.8202706 1.483228321 33.95145027 62.43799951 1.94E-05 4.7120118 3.109000517 RGPGYTSGTNSEASNAS(ph)ET(ph)ESDHRDELSDWSLAPTEEER ddPTM_HeLa_A486_30min_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEER 39 2 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 2 0 RGPGY(0.003)T(0.014)S(0.016)GT(0.019)NS(0.019)EAS(0.022)NAS(0.904)ET(0.556)ES(0.445)DHRDELSDWSLAPTEEER 150.45 2.37E-09 357610000 68490 91597 56987 21700 64594 72418 69962 70480 75517 66350 TRUE FALSE FALSE 63689.20468 84338.52013 79053.89256 50518.69666 56492.0182 63483.80345 52456.76762 54433.24257 82062.87436 49735.52813 1.280557522 1.695739913 1.589485334 1.015746661 1.135848363 1.276427653 1.054714197 1.094453897 1.649984979 1 15.60198918 -5.250435836 24.93857373 1.176790473 1.539308851 0.381045611 0.202071626 708.7380838 1606290.601 0.053736889 0.091937843 5.62E-06 5.250435836 0.362518378 RGPGYTSGTNSEASNAS(ph)ETES(ph)DHRDELSDWSLAPTEEER ddPTM_HeLa_A486_30min_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEER 39 2 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 2 0 RGPGYTSGTNSEAS(0.002)NAS(0.94)ET(0.116)ES(0.942)DHRDELSDWSLAPTEEER 158.97 2.98E-11 404400000 55877 69207 43371 19323 56499 56678 61936 57310 55597 71054 TRUE FALSE FALSE 51960.31085 63722.78527 60165.41272 44984.92053 49412.36859 49685.64462 46438.95771 44261.76407 60416.19272 53261.61592 0.975567676 1.19641104 1.129620491 0.844602999 0.92772943 0.932860255 0.871902906 0.831025558 1.134328948 1 15.70080858 -5.249566788 24.77227476 0.924619518 1.110120885 0.377708491 0.096752343 614.6998827 1282574.256 0.025402743 0.043547073 5.63E-06 5.249566788 0.185501367 RGPGYTSGTNSEASNAS(ph)ETESDHRDELSDWSLAPTEEER ddPTM_HeLa_A486_30min_R1 2 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEER 39 2 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 1 0 RGPGYTSGTNSEAS(0.001)NAS(0.497)ET(0.497)ES(0.004)DHRDELSDWSLAPTEEER;RGPGYTSGTNSEASNAS(0.457)ET(0.086)ES(0.457)DHRDELSDWSLAPTEEER ; 190.19 4.88E-22 711990000 125737 150049 115088 29838 128745 113727 105764 109819 117593 89314 TRUE FALSE FALSE 116923.4856 138158.5708 159653.1558 69464.37193 112596.6016 99696.51903 79300.72854 84815.61103 127786.0559 66949.19306 1.746451006 2.063633099 2.384691263 1.037568472 1.681821639 1.489136978 1.184491178 1.266865322 1.908701959 1 16.03077905 -5.259834686 24.99999419 1.388669656 2.06479592 0.530917711 0.300167417 113.2558888 1764433.411 0.081013691 0.131441954 5.50E-06 5.259834686 0.676126264 RGPGYTSGTNSEASNAS(ph)ETESDHRDELSDWSLAPTEEERESFLR ddPTM_HeLa_A485_30min_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESFLR 44 3 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 1 0 RGPGYTSGTNSEASNAS(0.485)ET(0.485)ES(0.03)DHRDELSDWSLAPTEEERESFLR 139.16 6.59E-09 609860000 30915 30911 89993 47639 178030 70020 107610 130940 89543 86916 TRUE FALSE FALSE 37791.93509 34525.77256 123285.1556 50241.39794 160304.7081 73686.13893 84618.24441 98826.75969 107513.4588 65249.44077 0.579191709 0.529135149 1.889443866 0.769989709 2.456798192 1.129299164 1.296842447 1.514599336 1.647729965 1 15.99367792 -4.745704255 24.9753762 1.474344156 0.554162623 0.392754332 0.451900496 221.6792525 351851.8315 0.107728163 0.282908807 1.80E-05 4.745704255 -0.920181533 RGPGYTSGTNSEASNASET(ph)ESDHRDELSDWSLAPTEEERESFLR ddPTM_HeLa_A486_30min_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESFLR 44 3 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 1 0 RGPGYTSGTNSEASNAS(0.093)ET(0.484)ES(0.212)DHRDELS(0.212)DWSLAPTEEERESFLR 97.47 7.13E-06 216220000 18321 21569 20908 7695.4 30847 32113 33300 31065 18179 27925 TRUE FALSE FALSE 17036.79251 19859.79389 29004.13754 17915.2801 26977.88162 28151.22456 24967.98779 23992.17764 19754.77036 20932.39824 0.813895872 0.94875865 1.385609867 0.855863714 1.288809878 1.344863796 1.192791552 1.146174336 0.943741378 1 14.35344999 -4.535539979 24.3621916 1.154547902 0.847611474 0.30617973 0.163658844 155.583203 299366.3827 0.040945966 0.108498797 2.91E-05 4.535539979 -0.306936427 RGPGYTSGTNSEASNASETES(ph)DHRDELSDWSLAPTEEER ddPTM_HeLa_A485_30min_R1 1 RGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEER 39 2 A0A087WXC0;R9WNI0;G3V0J0;Q06787-2;Q06787-9;Q06787-7;Q06787 A0A087WXC0 FMR1 Fragile X mental retardation protein 1 1 0 RGPGYTSGTNSEASNAS(0.417)ET(0.035)ES(0.548)DHRDELSDWSLAPTEEER 224.08 2.66E-40 699130000 69904 75391 70068 32594 47251 73752 60386 60292 56291 58447 TRUE FALSE FALSE 85453.90363 84207.32164 95989.06897 34374.52769 42546.52453 77613.54068 47484.03779 45505.29247 67588.08737 43877.23854 1.947567953 1.919157277 2.187673431 0.783425048 0.969671883 1.768879338 1.082202057 1.037104749 1.540390636 1 15.42118511 -5.25191425 24.99653561 1.183453294 2.008235369 0.658406493 0.280177007 428.5364341 1124593.975 0.077790895 0.132544239 5.60E-06 5.25191425 0.824782075 RGPLAGLGPGS(ph)T(ph)PR ddPTM_HeLa_A485_30min_R1 1 RGPLAGLGPGSTPR 14 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 RGPLAGLGPGS(1)T(1)PR 56.906 0.028562 262730000 130600 154390 144820 135620 205620 142580 174790 192600 137050 188160 TRUE FALSE FALSE 159651.5194 172444.5675 198394.9445 143028.5772 185147.7508 150045.2683 137444.6886 145364.548 164554.6779 141255.1748 1.130234837 1.22080177 1.404514523 1.012554601 1.310732517 1.062228471 0.973024095 1.029091842 1.164946191 1 17.1079442 -6.380583204 6.765676057 1.040833414 1.214842358 0.38589878 0.1073316 0.267548523 13.84509976 0.037332329 0.03282241 4.16E-07 6.380583204 0.174008944 RGPLAGLGPGS(ph)T(ph)PR ddPTM_HeLa_A486_30min_R1 2 RGPLAGLGPGSTPR 14 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 RGPLAGLGPGS(1)T(1)PR;RGPLAGLGPGS(1)T(1)PR ; 60.764 0.02143 184182000 301830 296040 219820 107148 332920 288820 311080 330030 241370 337410 TRUE FALSE FALSE 280673.2757 272580.7122 304940.191 249445.959 291162.0692 253188.3249 233244.4937 254889.3735 262292.1459 252920.3398 1.109729948 1.077733457 1.20567682 0.986262944 1.151200688 1.001059563 0.922205363 1.007785193 1.037054379 1 17.94832354 -6.346629875 6.718840563 0.988656221 1.1032288 0.477628268 0.058739947 0.223670694 14.92343754 0.020289499 0.017863442 4.50E-07 6.346629875 0.11457258 RGPLAGLGPGS(ph)TPR ddPTM_HeLa_A485_30min_R1 1 RGPLAGLGPGSTPR 14 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 RGPLAGLGPGS(0.502)T(0.498)PR 91.657 0.00075559 849440000 409010 529260 483750 415770 580360 474200 628170 663150 407820 512270 TRUE FALSE FALSE 499992.8634 591152.3531 662709.2555 438482.4623 522577.3206 499028.3787 493956.3478 500511.4227 489665.7333 384570.5166 1.300133114 1.53717544 1.723245093 1.140187413 1.358859554 1.297625161 1.284436343 1.301481526 1.273279443 1 18.55288864 -12.03088068 0.073288987 2.24E-06 1.858615108 0.436989872 0.140510714 175.8388865 1.380596227 35.92237657 7.825082852 9.31E-13 12.03088068 1.858612869 RGPLAGLGPGST(ph)PR ddPTM_HeLa_A485_30min_R1 1 RGPLAGLGPGSTPR 14 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 RGPLAGLGPGS(0.235)T(0.765)PR 104.78 0.00032826 564700000 393810 484810 491050 370570 545450 468360 587370 619270 392310 482580 TRUE FALSE FALSE 481411.6759 541504.3122 672709.8293 390813.3008 491143.0828 492882.6054 461873.6011 467393.0615 471043.0185 362281.6872 1.328832488 1.494705174 1.856869538 1.078755329 1.355693926 1.3604955 1.274901872 1.290137145 1.300212059 1 18.46675236 -11.7094014 0.073024919 7.86E-07 1.905904582 0.344055287 0.17812037 196.4769196 1.662056588 42.10128473 10.25630199 1.95E-12 11.7094014 1.905903797 RGPLAGLGPGST(ph)PR ddPTM_HeLa_A486_30min_R1 2 RGPLAGLGPGSTPR 14 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 RGPLAGLGPGS(0.068)T(0.932)PR;RGPLAGLGPGS(0.338)T(0.662)PR ; 116.99 0.00012673 1106440000 967250 1061140 902910 344630 1131440 928110 1092500 1130470 844180 1021010 TRUE FALSE FALSE 899450.7699 977051.4018 1252540.933 802316.0566 989524.2449 813609.2245 819144.9447 873086.659 917354.2021 765342.4503 1.175226553 1.276619899 1.6365758 1.048309886 1.292916974 1.063065591 1.070298589 1.140779083 1.198619261 1 19.5457459 -5.312093694 24.99928387 1.125376152 1.354190194 0.4132981 0.134176459 356.1776233 175782.57 0.037588906 0.055753462 4.87E-06 5.312093694 0.228814041 RGPLSQNGSFGPSPVSGGECS(ph)PPLTVEPPVRPLSATLNR ddPTM_HeLa_A485_30min_R1 1 RGPLSQNGSFGPSPVSGGECSPPLTVEPPVRPLSATLNR 39 2 Q5JRA6-4;Q5JRA6-2;Q5JRA6 Q5JRA6-4 MIA3 Melanoma inhibitory activity protein 3 1 0 RGPLSQNGSFGPSPVS(0.015)GGECS(0.983)PPLT(0.001)VEPPVRPLSATLNR 64.384 0.0021916 214490000 16984 10709 11038 16617 14127 7897.6 14168 12674 14096 29422 TRUE FALSE FALSE 20762.03221 11961.32439 15121.41553 17524.74463 12720.46628 8311.106124 11140.89106 9565.681628 16924.9379 22087.63687 0.939984315 0.541539345 0.68460993 0.793418723 0.575908883 0.376278647 0.504394885 0.433078545 0.766262955 1 14.43095145 -8.007735648 19.35941695 1.000000016 0.600722458 0.373663485 0.15847537 17.58679229 44016.47381 0.159408742 0.04115944 9.82E-09 8.007735648 -0.399277559 RGPNYTSGYGTNSELSNPS(ph)ETESER ddPTM_HeLa_A485_30min_R1 2 RGPNYTSGYGTNSELSNPSETESER 25 1 B4DXZ6;P51114-3;P51114;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 RGPNYTSGYGTNSELSNPS(0.983)ET(0.017)ESER;RGPNYTSGYGTNSELSNPS(1)ETESER ; 240.74 2.55E-49 2300800000 295860 344980 341120 309310 344700 279620 327520 306710 290620 365870 TRUE FALSE FALSE 361673.0363 385322.4101 467314.4832 326206.8221 310380.4577 294260.4708 257542.6764 231488.8916 348944.7683 274665.3423 1.316777112 1.402879616 1.701395885 1.187651923 1.130031387 1.071341831 0.937659896 0.842803426 1.270436107 1 18.06731536 -5.547181599 3.036937649 1.029261264 1.467057098 0.641952421 0.142512285 0.15811739 2.988887383 0.044157932 0.062722932 2.84E-06 5.547181599 0.437795834 RGPNYTSGYGTNSELSNPS(ph)ETESER ddPTM_HeLa_A486_30min_R1 4 RGPNYTSGYGTNSELSNPSETESER 25 1 B4DXZ6;P51114-3;P51114;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 RGPNYTSGYGTNSELSNPS(0.964)ET(0.036)ESER;RGPNYTSGYGTNSELS(0.001)NPS(0.993)ET(0.006)ESER;RGPNYTSGYGTNSELS(0.001)NPS(0.998)ET(0.001)ESER;RGPNYTSGYGTNSELSNPS(0.997)ET(0.003)ESER ;;; 232.53 2.77E-39 2864010000 559720 657720 494076 174526 579680 541350 565410 574290 531271 556310 TRUE FALSE FALSE 520486.5184 605599.8718 685395.459 406305.3481 506971.1291 474563.741 423938.4377 443536.7037 577321.998 417006.355 1.248150087 1.452255738 1.643609146 0.974338504 1.215739576 1.138025201 1.016623446 1.06362097 1.384444124 1 18.66970984 -5.266975325 24.99837769 1.117182693 1.448430067 0.531999337 0.14384556 346.2817795 1563687.252 0.03991206 0.061167098 5.41E-06 5.266975325 0.331247373 RGPRT(ph)PPITTK ddPTM_HeLa_A485_30min_R1 4 RGPRTPPITTK 11 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 RGPRT(1)PPITTK;RGPRT(1)PPITTK;RGPRT(1)PPITTK;RGPRT(1)PPITTK ;;; 132.08 3.56E-05 2363650000 1334590 1627810 1236600 1367280 1781000 1704820 2154320 2356500 1379320 1878920 TRUE FALSE FALSE 1631464.941 1818168.219 1694069.799 1441971.044 1603677.387 1794081.739 1694031.933 1778564.68 1656136.872 1410539.823 1.156624517 1.288987514 1.201008133 1.022283115 1.136924573 1.271911441 1.200981288 1.260910647 1.174115644 1 20.42781597 -10.59973797 2.155655724 0.973687187 1.191889673 0.376067065 0.073558313 1071499.041 762625.1657 158449.1817 0.020799221 2.51E-11 10.59973797 0.218202487 RGPRT(ph)PPITTK ddPTM_HeLa_A486_30min_R1 4 RGPRTPPITTK 11 2 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 RGPRT(1)PPITTK;RGPRT(1)PPITTK;RGPRT(1)PPITTK;RGPRT(1)PPITTK ;;; 114.69 0.00037645 2174340000 1860400 1891680 1287210 719070 1966260 1804460 2174980 2116020 1557570 2217260 TRUE FALSE FALSE 1729995.567 1741776.387 1785652.185 1674031.3 1719633.336 1581844.072 1630776.999 1634248.438 1692581.422 1662043.664 1.040884547 1.047972701 1.074371404 1.007212588 1.034649915 0.951746399 0.98118782 0.983276477 1.018373619 1 20.66452685 -5.749476968 1.713216352 0.987098954 1.051767512 0.585034426 0.0224127 0.241559967 1.466797267 0.007908413 0.010650625 1.78E-06 5.749476968 0.064668559 RGPS(ph)PPASPTR ddPTM_HeLa_A485_30min_R1 2 RGPSPPASPTR 11 1 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 RGPS(0.998)PPAS(0.002)PTR;RGPS(1)PPASPTR ; 55.213 0.023161 1152160000 129015 206000 210852 130909 226550 177910 214429 235370 195332 181315 TRUE FALSE FALSE 157713.9417 230089.908 288854.9291 138060.2272 203993.8865 187225.0925 168614.4924 177645.1385 234533.3407 136116.5074 1.158668737 1.69038945 2.122115346 1.014279824 1.498671179 1.37547676 1.238751241 1.305096214 1.723033784 1 17.05448251 -5.278039432 24.99761592 1.328496793 1.660391091 0.225720666 0.294598859 1235.576891 1860622.437 0.082075694 0.12211857 5.27E-06 5.278039432 0.331894298 RGPS(ph)PPASPTR ddPTM_HeLa_A486_30min_R1 3 RGPSPPASPTR 11 1 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 RGPS(1)PPASPTR;RGPS(0.995)PPAS(0.005)PTR;RGPS(0.999)PPAS(0.001)PTR ;; 62.055 0.01519 791140000 207958 259475 235977 86505 308799 225525 250290 248335 230125 239390 TRUE FALSE FALSE 193381.2181 238913.256 327353.6141 201388.0117 270066.55 197702.0185 187664.7947 191794.5416 250072.4203 179445.1858 1.077661778 1.331399641 1.824254089 1.122281497 1.505008612 1.101740443 1.045805681 1.068819655 1.393586677 1 17.45318369 -6.276702946 24.18471062 1.121530139 1.381097337 0.248831293 0.217015928 771.1549977 1221870.033 0.076266383 0.067530593 5.29E-07 6.276702946 0.259567198 RGQPAS(ph)PSAHMVSHS(ph)HSPSVVS ddPTM_HeLa_A485_30min_R1 1 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 2 0 RGQPAS(0.996)PS(0.004)AHMVSHS(0.595)HS(0.405)PSVVS 113.64 0.00014214 595040000 135280 272240 270280 51732 275560 152410 215640 257610 214000 153970 TRUE FALSE FALSE 165372.5693 304076.0998 370267.8193 54557.98817 248124.2789 160389.9519 169566.7524 194430.7436 256947.8371 115588.1126 1.43070568 2.630686608 3.203338223 0.472003452 2.146624538 1.387599021 1.466991272 1.682099821 2.222960746 1 16.81863351 -5.249464053 24.99688195 1.5340896 2.44248771 0.316859874 0.628403229 937.8443761 1957620.75 0.166638247 0.285794244 5.63E-06 5.249464053 0.908398109 RGQPAS(ph)PSAHMVSHS(ph)HSPSVVS ddPTM_HeLa_A486_30min_R1 1 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 2 0 RGQPAS(0.998)PS(0.002)AHMVS(0.017)HS(0.563)HS(0.419)PS(0.001)VVS 107.45 0.00023418 590240000 250430 228190 259600 15077 318470 163310 198340 194230 223570 80509 TRUE FALSE FALSE 232876.1502 210107.3933 360124.0723 35100.01795 278524.523 143162.4726 148713.2342 150008.069 242949.2276 60349.02237 3.858822249 3.481537647 5.967355529 0.58161701 4.615228417 2.372241786 2.464219441 2.485675212 4.025735928 1 15.88104278 -5.252168882 24.96093294 2.64881323 4.34046817 0.316634767 1.284845581 863.4617205 2324876.933 0.331614341 0.564261612 5.60E-06 5.252168882 1.69165494 RGQPAS(ph)PSAHMVSHSHS(ph)PSVVS ddPTM_HeLa_A485_30min_R1 1 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 2 0 RGQPAS(0.993)PS(0.007)AHMVS(0.017)HS(0.259)HS(0.709)PS(0.015)VVS 75.103 0.0074837 480570000 99609 199250 212740 64512 232880 136270 180710 196410 165060 115850 TRUE FALSE FALSE 121766.6784 222550.5543 291441.3789 68036.12721 209693.6495 143404.8865 142099.8322 148240.1395 198186.028 86970.72706 1.400088082 2.558913347 3.351028429 0.782287667 2.411083092 1.64888683 1.633881158 1.704483158 2.27876706 1 16.40824227 -5.260762604 24.99980565 1.699020906 2.448900224 0.242680279 0.640694979 92.126636 3403058.271 0.172651583 0.277570499 5.49E-06 5.260762604 0.749879318 RGQPAS(ph)PSAHMVSHSHSPSVVS ddPTM_HeLa_A485_30min_R1 6 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 RGQPAS(0.867)PS(0.124)AHMVS(0.004)HS(0.004)HS(0.001)PSVVS;RGQPAS(0.943)PS(0.057)AHMVSHSHSPSVVS;RGQPAS(0.967)PS(0.032)AHMVS(0.001)HSHSPSVVS;RGQPAS(0.964)PS(0.036)AHMVSHSHSPSVVS;RGQPAS(0.994)PS(0.006)AHMVSHSHSPSVVS;RGQPAS(0.977)PS(0.023)AHMVSHSHSPSVVS ;;;;; 185.45 1.20E-19 2241984000 307786 826193 910191 142186.4 948465 472523 645164 745840 648001 363764 TRUE FALSE FALSE 376251.9339 922809.0844 1246908.527 149953.683 854032.4943 497263.5736 507319.4409 562921.5706 778048.8569 273084.3294 1.377786615 3.379209223 4.566020064 0.54911127 3.127358118 1.820915813 1.857739117 2.061347027 2.849115724 1 18.058987 -5.261267008 24.99999998 1.986005096 3.134825591 0.226677844 1.016323201 24.37724938 3535369.807 0.27475864 0.439882249 5.48E-06 5.261267008 1.148820496 RGQPAS(ph)PSAHMVSHSHSPSVVS ddPTM_HeLa_A486_30min_R1 6 RGQPASPSAHMVSHSHSPSVVS 22 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;G5E9M9;Q14135-5 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 RGQPAS(0.946)PS(0.054)AHMVSHSHSPSVVS;RGQPAS(0.964)PS(0.036)AHMVSHSHSPSVVS;RGQPAS(0.977)PS(0.023)AHMVSHSHSPSVVS;RGQPAS(0.881)PS(0.119)AHMVSHSHSPSVVS;RGQPAS(0.993)PS(0.007)AHMVSHSHSPSVVS;RGQPAS(0.99)PS(0.01)AHMVSHSHSPSVVS ;;;;; 203.33 5.87E-27 1868523000 827195 829640 960586 63676.1 1174246 491323 609039 626692 838362 224592 TRUE FALSE FALSE 769212.9021 763896.3049 1332550.625 148241.1788 1026961.117 430708.5637 456651.0004 484007.9122 911031.8932 168352.7014 4.569055893 4.53747578 7.915231617 0.880539354 6.100057255 2.558370375 2.712466131 2.874963742 5.411448025 1 17.36112734 -5.261309665 24.99999995 3.244141396 5.56027642 0.303677026 1.78717573 15.6359265 3013275.655 0.473936898 0.758730354 5.48E-06 5.261309665 2.316135024 RGQPFWLTLHFEGR ddPTM_HeLa_A485_30min_R1 2 RGQPFWLTLHFEGR 14 1 A2A2A0;A2A299;P21980-3;P21980-2;P21980 A2A2A0 TGM2 Protein-glutamine gamma-glutamyltransferase 2 0 0 ; ; 189.69 2.43E-11 60407000 59820 76544 60645 46361 56272 56682 84051 87626 37128 75059 FALSE FALSE TRUE 73126.75262 85495.15496 83080.10915 48893.58404 50669.3621 59649.78187 66092.81722 66135.58611 44579.24904 56348.17266 1.297766177 1.517265794 1.474406449 0.867704874 0.89921926 1.058593013 1.172936301 1.173695312 0.791139214 1 15.7820812 -5.252827445 24.99418679 1.008096158 1.438558141 0.708222125 0.127729186 363.1664178 1054005.861 0.036684834 0.062284952 5.59E-06 5.252827445 0.430461983 RGQS(ph)SPPPAPPICLR ddPTM_HeLa_A485_30min_R1 4 RGQSSPPPAPPICLR 15 1 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 0 RGQS(0.5)S(0.5)PPPAPPICLR;RGQS(0.5)S(0.5)PPPAPPICLR;RGQS(0.59)S(0.41)PPPAPPICLR;RGQS(0.5)S(0.5)PPPAPPICLR ;;; 108.71 0.00015218 2609450000 881420 1071320 943990 1229160 1321730 1045610 1481910 1543290 978170 1567480 TRUE FALSE FALSE 1077488.838 1196601.555 1293211.184 1296305.898 1190133.92 1100356.523 1165287.822 1164795.708 1174479.747 1176736.083 0.915658875 1.016881841 1.098981498 1.101611412 1.011385592 0.935092021 0.990271174 0.989852971 0.998082547 1 20.16635936 -6.001222626 24.9991754 0.981472102 1.039266327 0.175846669 0.051137699 78.94261797 1614198.574 0.017129504 0.019173977 9.97E-07 6.001222626 0.057794225 RGQS(ph)SPPPAPPICLR ddPTM_HeLa_A486_30min_R1 2 RGQSSPPPAPPICLR 15 1 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 0 RGQS(0.598)S(0.402)PPPAPPICLR;RGQS(0.704)S(0.296)PPPAPPICLR ; 82.877 0.0017998 897920000 327670 357970 317850 148104 453090 310980 403880 404870 304500 392040 TRUE FALSE FALSE 304702.0251 329603.1535 440930.0323 344793.5968 396259.2273 272614.4494 302824.9522 312689.9392 330894.3052 293870.6322 1.036857691 1.121592692 1.50042224 1.173283612 1.348413839 0.92766823 1.030470278 1.064039427 1.125986298 1 18.16482167 -6.261682361 24.99999955 1.033687651 1.240944931 0.39761197 0.126956007 24.7826717 2549757.124 0.044704533 0.041944141 5.47E-07 6.261682361 0.20725728 RGQSS(ph)PPPAPPICLR ddPTM_HeLa_A486_30min_R1 1 RGQSSPPPAPPICLR 15 1 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 0 RGQS(0.392)S(0.608)PPPAPPICLR 88.486 0.0007621 752540000 986960 886370 549540 671460 1186300 1210600 1568700 1473200 718440 1879300 TRUE FALSE FALSE 917779.2007 816130.8131 762336.6052 1563192.814 1037503.192 1061248.48 1176194.668 1137784.52 780714.9577 1408711.048 0.651502806 0.579345789 0.54115896 1.109661783 0.736491131 0.753347169 0.83494388 0.807677715 0.554205178 1 20.42594429 RGRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_A485_30min_R1 5 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 33 2 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ;;;; 236.61 6.49E-51 3511430000 136799 158536 160532 179781 310888 282072 412775 566609 184557 277908 TRUE FALSE FALSE 167229.4656 177075.4061 219919.4671 189601.9808 279934.8991 296840.8538 324582.2492 427647.2543 221595.897 208630.6501 0.801557516 0.84875068 1.054109101 0.908792551 1.341772644 1.422805583 1.555774518 2.049781535 1.062144498 1 17.6705916 -5.858699038 2.023223517 1.496794939 0.890739851 0.420568363 0.281281294 0.279286244 2.344490464 0.096498553 0.116792336 1.38E-06 5.858699038 -0.606055088 RGRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_A486_30min_R1 7 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 33 2 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(0.882)PQPPAEEDEDDFDDT(0.118)LVAIDTYNCDLHFK;RGRS(0.872)PQPPAEEDEDDFDDT(0.128)LVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;RGRS(0.959)PQPPAEEDEDDFDDT(0.041)LVAIDTYNCDLHFK ;;;;;; 200.43 1.71E-29 2564756900 143481.2 166576.2 151024.5 127430.9 317378.7 212370.9 308111.5 333854.1 167938.1 233222.3 TRUE FALSE FALSE 133423.9088 153376.0953 209505.231 296665.5752 277570.104 186170.7376 231018.7438 257842.8094 182495.1097 174821.9181 0.763198976 0.877327608 1.198392246 1.696958702 1.587730572 1.064916457 1.321451832 1.474888345 1.043891474 1 17.41552655 -4.793723628 3.459796574 1.340512987 0.796871254 0.430841936 0.221891838 0.198376504 4.867300579 0.060135807 0.158175249 1.61E-05 4.793723628 -0.543641733 RGRS(ph)PS(ph)PKPR ddPTM_HeLa_A485_30min_R1 5 RGRSPSPKPR 10 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGRS(1)PS(1)PKPR;RGRS(1)PS(1)PKPR;RGRS(1)PS(1)PKPR;RGRS(1)PS(1)PKPR;RGRS(1)PS(1)PKPR ;;;; 93.348 0.001605 4899590000 3243128 2290263 880828 4878290 1180912 4499040 3132681 5305520 2226502 4398248 TRUE FALSE FALSE 3964550.635 2558089.335 1206682.932 5144778.63 1063336.255 4734602.778 2463358.113 4004332.901 2673340.529 3301845.717 1.200707415 0.774745265 0.365457091 1.55815234 0.322042986 1.433926108 0.746054881 1.212755908 0.809650346 1 21.65484128 -6.293712696 24.99384552 1.035373121 0.853425594 0.061140018 0.383423039 2267.764427 1756247.228 0.127546596 0.112494158 5.08E-07 6.293712696 -0.181947527 RGRS(ph)PS(ph)PKPR ddPTM_HeLa_A486_30min_R1 1 RGRSPSPKPR 10 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGRS(1)PS(1)PKPR 89.629 0.0019438 345530000 367110 113840 180390 185400 129130 550780 255090 233250 294420 618630 TRUE FALSE FALSE 341377.4848 104818.9038 250241.839 431620.5696 112933.3113 482830.3635 191263.7839 180144.0668 319940.5627 463721.0214 0.736169958 0.226038715 0.539638764 0.930776371 0.243537183 1.041208704 0.412454418 0.388475093 0.6899419 1 18.8228976 -8.017065122 22.7952946 1.000000016 0.563342744 0.207512319 0.257524767 515.0840318 688042.4917 0.237956423 0.061440084 9.61E-09 8.017065122 -0.436657272 RGRSPQPPAEEDEDDFDDT(ph)LVAIDTYNCDLHFK ddPTM_HeLa_A486_30min_R1 1 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 33 2 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 RGRS(0.434)PQPPAEEDEDDFDDT(0.566)LVAIDTYNCDLHFK 58.98 0.0092065 8716400 5038.2 4393.1 5845.8 3097.4 10939 7787.8 9915.3 9141.8 4358.3 7142.6 TRUE FALSE FALSE 4685.048197 4044.974757 8109.450316 7210.903734 9566.928618 6827.020417 7434.387067 7060.411704 4736.080953 5354.046469 0.875048101 0.755498627 1.514639509 1.346813812 1.786859466 1.275114151 1.388554827 1.31870572 0.884579725 1 12.38641395 -4.754132917 24.99982578 1.345066064 0.815273133 0.40706228 0.238680447 150.2924468 514228.8609 0.061098472 0.154789998 1.76E-05 4.754132917 -0.529792931 RGS(ph)ASGSEPAGDSDR ddPTM_HeLa_A485_30min_R1 2 RGSASGSEPAGDSDR 15 1 A0A0C4DG27;P50747 A0A0C4DG27 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 0 RGS(0.925)AS(0.067)GS(0.008)EPAGDSDR;RGS(0.98)AS(0.019)GSEPAGDSDR ; 197.14 8.98E-25 399400000 224300 236510 208614 266840 267190 225490 301790 256530 201995 358770 TRUE FALSE FALSE 274194.7612 264167.7871 285788.9998 281416.7935 240587.6254 237296.3077 237310.1011 193615.6153 242533.5437 269335.2417 1.018042643 0.980814042 1.061090253 1.044856929 0.893264557 0.881044405 0.881095618 0.718864765 0.90048945 1 18.03904349 -5.848295429 4.330115971 0.861818377 1.02555096 0.526391936 0.067626562 0.160631793 5.526569123 0.021287503 0.024701818 1.42E-06 5.848295429 0.163732583 RGS(ph)ASGSEPAGDSDR ddPTM_HeLa_A486_30min_R1 2 RGSASGSEPAGDSDR 15 1 A0A0C4DG27;P50747 A0A0C4DG27 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 0 RGS(0.988)AS(0.012)GSEPAGDSDR;RGS(0.966)AS(0.032)GS(0.002)EPAGDSDR ; 164.8 1.52E-11 603460000 491650 500580 396640 205741 582240 526990 509070 548300 411460 607040 TRUE FALSE FALSE 457187.8739 460912.2177 550229.6304 478975.4456 509210.03 461975.3318 381695.3016 423464.0593 447125.6841 455033.2328 1.004735129 1.012919902 1.209207571 1.052616405 1.119061188 1.015256246 0.838829505 0.930622268 0.982622041 1 18.79561239 -6.527566303 23.5234064 0.931494903 1.080234108 0.496721119 0.067104621 52.20310673 261960.0487 0.025909712 0.020163804 2.97E-07 6.527566303 0.148739205 RGS(ph)DAS(ph)DFDISEIQSVCSDVETVPQTHRPTPR ddPTM_HeLa_A485_30min_R1 5 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 2 0 RGS(1)DAS(1)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.993)DAS(0.993)DFDIS(0.014)EIQSVCSDVETVPQTHRPTPR;RGS(0.998)DAS(0.998)DFDIS(0.002)EIQSVCSDVETVPQTHRPTPR;RGS(1)DAS(1)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.998)DAS(0.998)DFDIS(0.004)EIQSVCSDVETVPQTHRPTPR ;;;; 136.99 6.21E-07 1862522000 98237 88378 84696 137634 134512 111346 147478 139006 94362 217651 TRUE FALSE FALSE 120089.4817 98713.03831 116028.5749 145152.5969 121119.513 117175.9044 115968.1205 104914.5605 113299.5879 163394.6113 0.734965987 0.604138885 0.710112616 0.888356083 0.741269936 0.717134448 0.709742626 0.642093149 0.693410798 1 17.31800088 -10.08482812 4.269656913 1.000029805 0.715780039 0.596233616 0.070188759 16774952.25 7924408.863 5212.958212 0.018382762 8.23E-11 10.08482812 -0.284249766 RGS(ph)DAS(ph)DFDISEIQSVCSDVETVPQTHRPTPR ddPTM_HeLa_A486_30min_R1 5 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 2 0 RGS(1)DAS(1)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(1)DAS(1)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(1)DAS(1)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(1)DAS(1)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.951)DAS(0.951)DFDIS(0.097)EIQS(0.001)VCSDVETVPQTHRPTPR ;;;; 237.98 1.35E-50 2354421000 110034 141133 175246.2 55083.9 192893 127205 178838 159802 119212.1 125047.4 TRUE FALSE FALSE 102321.1848 129949.1071 243106.2219 128238.103 168698.5613 111511.7404 134090.8408 123418.5731 129545.5008 93734.71712 1.091603922 1.386349808 2.593555828 1.368096122 1.79974471 1.189652499 1.430535505 1.316679421 1.382043973 1 16.51629587 -6.263764274 24.90873487 1.293996817 1.670336274 0.194268432 0.387329444 365.2812764 3913574.212 0.136019518 0.125700359 5.45E-07 6.263764274 0.376339458 RGS(ph)DASDFDISEIQSVCSDVETVPQTHRPTPR ddPTM_HeLa_A485_30min_R1 4 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 1 0 RGS(1)DASDFDISEIQSVCSDVETVPQTHRPTPR;RGS(1)DASDFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.999)DAS(0.001)DFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.846)DAS(0.154)DFDISEIQSVCSDVETVPQTHRPTPR ;;; 327.51 7.58E-128 2974050000 64959.6 113414 150809.3 62106.4 138098.6 141874.7 167972 229076.9 149543 130854.7 TRUE FALSE FALSE 79409.63891 126676.7807 206599.9358 65499.11537 124349.0185 149303.0399 132083.41 172895.4311 179554.9084 98235.03149 0.808363755 1.289527563 2.103118741 0.666759244 1.265831716 1.519855368 1.344565253 1.760018076 1.827809343 1 16.58394997 -6.257481633 6.153274183 1.529724016 1.246970861 0.087216151 0.414820312 0.405346501 73.61359384 0.144146224 0.136123164 5.53E-07 6.257481633 -0.282753155 RGS(ph)DASDFDISEIQSVCSDVETVPQTHRPTPR ddPTM_HeLa_A486_30min_R1 3 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 1 0 RGS(1)DASDFDISEIQSVCSDVETVPQTHRPTPR;RGS(1)DASDFDISEIQSVCSDVETVPQTHRPTPR;RGS(0.498)DAS(0.498)DFDIS(0.003)EIQSVCSDVETVPQTHRPTPR ;; 318.23 8.23E-110 2482290000 103634 79126 65493 16789 114549 85701 79223 65991 57772.9 94867 TRUE FALSE FALSE 96369.79177 72855.76759 90853.64356 39085.64047 100181.1963 75128.08196 59400.56746 50966.28987 62780.70149 71111.68572 1.355189246 1.024525953 1.277619039 0.549637378 1.408786689 1.056480116 0.83531373 0.71670766 0.882846481 1 16.11779904 -6.720321123 5.046711885 0.833929367 1.106278804 0.219684553 0.233197296 0.289345573 16.93075492 0.090672942 0.067383889 1.90E-07 6.720321123 0.272349437 RGS(ph)FCR ddPTM_HeLa_A485_30min_R1 2 RGSFCR 6 1 Q6P0Q8;Q6P0Q8-2;O15021 Q6P0Q8;O15021 MAST2;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 4 1 0 RGS(1)FCR;RGS(1)FCR ; 85.38 0.010396 208100000 69696 71643 61327 77021 99190 65108 96345 104707 75820 99262 TRUE FALSE FALSE 85199.63475 80021.02564 84014.40933 81228.4622 89314.29532 68516.9542 75760.10368 79027.44408 91036.37854 74517.81018 1.143345927 1.073851009 1.127440663 1.090054337 1.19856307 0.919470849 1.016671095 1.060517531 1.221672756 1 16.18529766 -6.234406725 24.96697441 1.045761524 1.121728375 0.222234224 0.077298919 1324.183578 1222997.267 0.026090684 0.026084935 5.83E-07 6.234406725 0.075966852 RGS(ph)FCR ddPTM_HeLa_A486_30min_R1 1 RGSFCR 6 1 Q6P0Q8;Q6P0Q8-2;O15021 Q6P0Q8;O15021 MAST2;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 4 1 0 RGS(1)FCR 80.165 0.012564 79969000 33558 27003 25528 14599 31461 35556 36521 34057 32773 40413 TRUE FALSE FALSE 31205.75749 24863.18394 35413.12526 33987.20979 27514.86802 31169.46223 27383.05952 26302.96456 35613.79003 30293.32176 1.030120029 0.820748023 1.169007663 1.121937372 0.908281642 1.028921902 0.903930567 0.868276011 1.175631722 1 14.88671216 -5.779981728 24.99599527 0.972812731 1.029656847 0.046389193 0.116806401 872.5101283 1176181.712 0.036911221 0.041933715 1.66E-06 5.779981728 0.056844117 RGS(ph)FDATGSGFSMTFSSSSYSSSGYGR ddPTM_HeLa_A485_30min_R1 13 RGSFDATGSGFSMTFSSSSYSSSGYGR 27 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RGS(0.992)FDAT(0.007)GS(0.001)GFSMTFSSSSYSSSGYGR;RGS(0.999)FDAT(0.001)GS(0.001)GFSMTFSSSSYSSSGYGR;RGS(0.999)FDAT(0.001)GSGFSMTFSSSSYSSSGYGR;RGS(0.845)FDAT(0.074)GS(0.074)GFS(0.007)MTFSSSSYSSSGYGR;RGS(0.987)FDAT(0.005)GS(0.005)GFS(0.002)MTFSSSSYSSSGYGR;RGS(0.914)FDAT(0.023)GS(0.023)GFS(0.031)MT(0.008)FSSSSYSSSGYGR;RGS(0.986)FDAT(0.006)GS(0.006)GFS(0.002)MTFSSSSYSSSGYGR;RGS(0.68)FDAT(0.212)GS(0.091)GFS(0.016)MT(0.001)FSSSSYSSSGYGR;RGS(0.995)FDAT(0.003)GS(0.003)GFSMTFSSSSYSSSGYGR;RGS(0.992)FDAT(0.004)GS(0.004)GFSMTFSSSSYSSSGYGR;RGS(0.998)FDAT(0.002)GSGFSMTFSSSSYSSSGYGR;RGS(0.977)FDAT(0.01)GS(0.01)GFS(0.003)MTFSSSSYSSSGYGR;RGS(0.828)FDAT(0.066)GS(0.077)GFS(0.027)MT(0.002)FSSSSYSSSGYGR ;;;;;;;;;;;; 210.81 5.21E-29 3111417000 511082.6 570722.3 499658.3 642471.8 649462.4 552106.9 780342.8 756507.3 542282.8 897056.7 TRUE FALSE FALSE 624771.1612 637463.3084 684502.6977 677568.4076 584799.6431 581014.3636 613616.186 570972.6985 651113.9838 673436.9738 0.927735164 0.946581986 1.016431714 1.006134849 0.868380659 0.862759822 0.911170919 0.847848753 0.966852147 1 19.36118341 -5.761261527 24.9999997 0.899640818 0.975261776 0.270913076 0.050469322 5.508254856 774191.5261 0.015052411 0.0182226 1.73E-06 5.761261527 0.075620958 RGS(ph)FDATGSGFSMTFSSSSYSSSGYGR ddPTM_HeLa_A486_30min_R1 9 RGSFDATGSGFSMTFSSSSYSSSGYGR 27 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RGS(0.78)FDAT(0.089)GS(0.131)GFSMTFSSSSYSSSGYGR;RGS(0.991)FDAT(0.004)GS(0.004)GFS(0.001)MTFSSSSYSSSGYGR;RGS(0.801)FDAT(0.095)GS(0.095)GFS(0.009)MTFSSSSYSSSGYGR;RGS(0.899)FDAT(0.05)GS(0.05)GFS(0.001)MTFSSSSYSSSGYGR;RGS(0.808)FDAT(0.096)GS(0.096)GFSMTFSSSSYSSSGYGR;RGS(0.964)FDAT(0.029)GS(0.007)GFSMTFSSSSYSSSGYGR;RGS(0.956)FDAT(0.012)GS(0.012)GFS(0.017)MT(0.002)FSSSSYSSSGYGR;RGS(0.994)FDAT(0.002)GS(0.003)GFS(0.001)MTFSSSSYSSSGYGR;RGS(0.832)FDAT(0.079)GS(0.079)GFS(0.01)MTFSSSSYSSSGYGR ;;;;;;;; 172.74 2.43E-14 2699380000 620649 629923 388850 628734 617790 658740 861513 754339 489482 980076 TRUE FALSE FALSE 577144.7101 580005.6073 539423.1338 1463724.526 540301.0175 577471.3564 645953.3352 582592.4768 531910.6939 734658.5904 0.78559581 0.789489996 0.734250087 1.99238741 0.735445042 0.786040433 0.879256492 0.793011182 0.72402433 1 19.48671443 RGS(ph)FSSENYWR ddPTM_HeLa_A485_30min_R1 5 RGSFSSENYWR 11 1 Q6P6C2-3;Q6P6C2;K7ER58;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 RGS(0.999)FS(0.001)SENYWR;RGS(0.994)FS(0.006)SENYWR;RGS(1)FSSENYWR;RGS(1)FSSENYWR;RGS(1)FSSENYWR ;;;; 272.09 7.60E-35 4225985000 448147 568435 531820 537807 689934 556653 626368 629895 494286 596004 TRUE FALSE FALSE 547835.7541 634908.5285 728562.3489 567186.0346 621241.7485 585798.4903 492539.3598 475412.2636 593484.6663 447431.1714 1.224402297 1.419008261 1.628322735 1.267649799 1.388463272 1.309248277 1.100815927 1.062537199 1.326426732 1 18.77130624 -6.611379268 3.336276189 1.127367184 1.392473717 0.487853483 0.127202217 0.217793819 4.830652209 0.052559954 0.039671229 2.45E-07 6.611379268 0.265106534 RGS(ph)FSSENYWR ddPTM_HeLa_A486_30min_R1 5 RGSFSSENYWR 11 1 Q6P6C2-3;Q6P6C2;K7ER58;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 RGS(0.999)FS(0.001)SENYWR;RGS(1)FSSENYWR;RGS(1)FSSENYWR;RGS(1)FSSENYWR;RGS(0.985)FS(0.015)SENYWR ;;;; 233.28 2.16E-19 3751820000 521490 568919 391107 202451 577517 503525 604385 661335 482210 615076 TRUE FALSE FALSE 484936.244 523835.7865 542554.1046 471316.1593 505079.4327 441405.205 453161.4805 510763.4573 524008.3511 461056.9661 1.051792467 1.136162828 1.176761538 1.022251466 1.095481621 0.957376718 0.982875249 1.107809869 1.136537108 1 18.81458549 -5.276535878 24.81257729 1.04377248 1.123031336 0.258072151 0.060881963 1023.950647 1682962.784 0.018199165 0.027123821 5.29E-06 5.276535878 0.079258857 RGS(ph)GDTSISIDTEASIR ddPTM_HeLa_A485_30min_R1 1 RGSGDTSISIDTEASIR 17 1 Q32MZ4-2;Q32MZ4;Q32MZ4-3;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 RGS(0.752)GDT(0.194)S(0.052)IS(0.001)IDTEASIR 51.495 0.02616 5436900 0 960.23 0 0 0 1081.1 941.57 1026.6 0 1332.9 TRUE FALSE FALSE 0 1072.520546 0 0 0 1137.704724 740.3958776 774.8247404 0 1000.63256 0 1.071842541 0 0 0 1.136985513 0.739927829 0.774334927 0 1 9.966696588 -6.247514376 24.98348901 0.716750495 0.238187237 0.280581086 0.411864806 1203.124944 2158582.765 0.138816048 0.138143498 5.66E-07 6.247514376 -0.478563258 RGS(ph)GDTSSLIDPDTSLSELR ddPTM_HeLa_A485_30min_R1 6 RGSGDTSSLIDPDTSLSELR 20 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGS(0.997)GDT(0.003)SSLIDPDTSLSELR;RGS(0.997)GDT(0.003)SSLIDPDTSLSELR;RGS(0.999)GDT(0.001)SSLIDPDTSLSELR;RGS(0.904)GDT(0.043)S(0.043)S(0.01)LIDPDTSLSELR;RGS(0.994)GDT(0.005)SSLIDPDTSLSELR;RGS(0.916)GDT(0.082)S(0.001)SLIDPDTSLSELR ;;;;; 252.64 5.36E-59 11425950000 2276075 2473686 2047920 2635290 2660543 2302471 2922552 2607944 2172462 3429857 TRUE FALSE FALSE 2782380.031 2762962.059 2805530.829 2779249.22 2395649.997 2423024.821 2298124.89 1968341.645 2608455.196 2574856.772 1.08059604 1.073054661 1.089587141 1.079380123 0.930401265 0.941032856 0.89252533 0.764447043 1.013048658 1 21.29606075 -5.794997102 4.051120887 0.908511781 1.08235742 0.583411277 0.064491877 0.142880488 5.063683314 0.020086558 0.024058247 1.60E-06 5.794997102 0.173845639 RGS(ph)GDTSSLIDPDTSLSELR ddPTM_HeLa_A486_30min_R1 6 RGSGDTSSLIDPDTSLSELR 20 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGS(0.994)GDT(0.006)SSLIDPDTSLSELR;RGS(1)GDTSSLIDPDTSLSELR;RGS(0.465)GDT(0.178)S(0.178)S(0.178)LIDPDTSLSELR;RGS(0.992)GDT(0.008)SSLIDPDTSLSELR;RGS(0.995)GDT(0.005)SSLIDPDTSLSELR;RGS(0.986)GDT(0.014)SSLIDPDTSLSELR ;;;;; 213.7 2.08E-27 12093550000 1645891 1810999 1187374 619981 1674449 1753630 1960677 1808918 1426701 1927090 TRUE FALSE FALSE 1530522.54 1667488.844 1647157.012 1443347.1 1464423.993 1537284.96 1470094.877 1397066.86 1550368.591 1444534.121 1.059526749 1.154343688 1.140268678 0.999178267 1.013769057 1.064208133 1.017694809 0.96714009 1.07326547 1 20.46217285 -5.260842935 24.99769436 1.019524147 1.121676107 0.59793809 0.037061964 34.86415611 1461174.807 0.010087297 0.016214801 5.48E-06 5.260842935 0.102151959 RGS(ph)GDTSSLIDPDTSLSELRDIYDLK ddPTM_HeLa_A485_30min_R1 4 RGSGDTSSLIDPDTSLSELRDIYDLK 26 2 C9JSU1;Q9Y608-4;Q9Y608 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGS(0.977)GDT(0.009)S(0.006)S(0.008)LIDPDTSLSELRDIYDLK;RGS(0.629)GDT(0.171)S(0.171)S(0.029)LIDPDTSLSELRDIYDLK;RGS(0.35)GDT(0.212)S(0.212)S(0.212)LIDPDT(0.004)S(0.004)LS(0.005)ELRDIYDLK;RGS(0.857)GDT(0.142)S(0.001)SLIDPDTSLSELRDIYDLK ;;; 248.01 3.20E-50 1050390000 414456 347458 308887 637408 769224 567991 1022481 1019845 485345 998853 TRUE FALSE FALSE 506650.3073 388090.1906 423157.1552 672227.985 692637.3577 597730.1305 804019.5814 769726.4147 582749.2897 749857.3296 0.675662272 0.51755204 0.564316889 0.896474514 0.923692188 0.797125142 1.072230076 1.026497154 0.777146887 1 19.5162566 -5.291460586 5.092551584 0.931324897 0.577416488 0.732980107 0.094585402 0.09430993 6.820440125 0.027047967 0.042318025 5.11E-06 5.291460586 -0.353908409 RGS(ph)GDTSSLIDPDTSLSELRDIYDLK ddPTM_HeLa_A486_30min_R1 4 RGSGDTSSLIDPDTSLSELRDIYDLK 26 2 C9JSU1;Q9Y608-4;Q9Y608 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGS(0.994)GDT(0.005)SSLIDPDTSLSELRDIYDLK;RGS(0.997)GDT(0.003)SSLIDPDTSLSELRDIYDLK;RGS(0.994)GDT(0.005)SSLIDPDTSLSELRDIYDLK;RGS(0.241)GDT(0.241)S(0.241)S(0.241)LIDPDT(0.012)S(0.012)LS(0.012)ELRDIYDLK ;;; 200.01 1.41E-28 1824292000 509392 510924 345446 421147 776212 721330 1081090 1067443 427139 858466 TRUE FALSE FALSE 473686.2513 470436.5215 479211.9426 980451.4996 678852.2531 632339.6385 810589.8474 824409.531 464163.7524 643500.5259 0.736108569 0.731058488 0.744695495 1.523621909 1.054936594 0.982655978 1.259656853 1.281132645 0.721310603 1 19.2955818 -5.06326883 24.99164368 1.127563525 0.734656156 0.427789527 0.201369356 184.9266209 73046.93955 0.053448767 0.092576111 8.64E-06 5.06326883 -0.392907369 RGS(ph)GEPTPQK ddPTM_HeLa_A485_30min_R1 1 RGSGEPTPQK 10 1 Q9H6A9-2;Q9H6A9 Q9H6A9-2 PCNXL3 Pecanex-like protein 3 1 0 RGS(0.995)GEPT(0.005)PQK 51.643 0.027129 291460000 148280 153270 143810 177130 136700 161920 182370 193950 150700 361780 TRUE FALSE FALSE 181264.3744 171193.5932 197011.3034 186806.1634 123089.668 170397.8808 143405.1597 146383.4584 180944.1077 271594.9041 0.667407126 0.630326971 0.725386598 0.687811739 0.453210521 0.627397194 0.528011231 0.538977191 0.666227919 1 18.05109689 -8.038013013 19.8078153 1.000000003 0.607279148 0.697019026 0.077247577 219.6862674 114474.8594 0.079473921 0.020520075 9.16E-09 8.038013013 -0.392720855 RGS(ph)GEPTPQK ddPTM_HeLa_A486_30min_R1 1 RGSGEPTPQK 10 1 Q9H6A9-2;Q9H6A9 Q9H6A9-2 PCNXL3 Pecanex-like protein 3 1 0 RGS(0.953)GEPT(0.047)PQK 79.614 0.0046322 191310000 198180 191150 173970 85379 250810 287130 229790 218440 265060 423860 TRUE FALSE FALSE 184288.6054 176002.5778 241335.8431 198766.6268 219351.0711 251706.8199 172294.1115 168705.9805 288035.6142 317722.6971 0.580029715 0.553950283 0.759580116 0.62559782 0.690385273 0.792221715 0.542278261 0.530984982 0.906562914 1 18.27740863 -7.897933619 5.168393997 0.995816542 0.640428496 0.692353475 0.085834741 0.111987512 4.314466125 0.086337192 0.022526883 1.26E-08 7.897933619 -0.355388047 RGS(ph)GSALGGPLDPQFVGPSDTSLGAAPGHR ddPTM_HeLa_A485_30min_R1 2 RGSGSALGGPLDPQFVGPSDTSLGAAPGHR 30 1 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 RGS(0.5)GS(0.5)ALGGPLDPQFVGPSDTSLGAAPGHR;RGS(0.5)GS(0.5)ALGGPLDPQFVGPSDTSLGAAPGHR ; 177.14 2.62E-15 770560000 182560 233150 172805 207991 291090 182550 200601 253390 159164 172927 TRUE FALSE FALSE 223169.8422 260414.8644 236732.7605 219353.0217 262108.0575 192108.0357 157740.9576 191245.7052 191106.7549 129819.4814 1.719078214 2.005976773 1.82355343 1.68967723 2.019019447 1.479808991 1.215079246 1.473166455 1.47209612 1 16.98614737 -6.431800713 4.765421186 1.330730737 1.847375482 0.72953582 0.161687903 0.122592534 4.678783331 0.056791897 0.049166099 3.70E-07 6.431800713 0.516644745 RGS(ph)GSALGGPLDPQFVGPSDTSLGAAPGHR ddPTM_HeLa_A486_30min_R1 1 RGSGSALGGPLDPQFVGPSDTSLGAAPGHR 30 1 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 RGS(0.5)GS(0.5)ALGGPLDPQFVGPSDTSLGAAPGHR 134.45 1.44E-06 383500000 97644 98765 77303 27267 104640 96307 107880 99476 93587 84749 TRUE FALSE FALSE 90799.65983 90938.5017 107236.7918 63478.954 91515.07547 84425.62152 80887.28296 76827.48635 101699.1965 63527.29878 1.429301443 1.43148699 1.688042683 0.999238992 1.44056299 1.328966022 1.273268099 1.209361768 1.600873931 1 15.95508906 -13.1243167 0.190742112 2.06E-29 1.436408294 0.250742086 0.187458311 138.4461413 1.832466114 54.7885198 0.512442571 7.51E-14 13.1243167 1.436408294 RGS(ph)GVFCANCLTTK ddPTM_HeLa_A485_30min_R1 1 RGSGVFCANCLTTK 14 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 RGS(1)GVFCANCLTTK 67.168 0.0073314 157230000 331110 302880 223370 372260 399940 323130 478920 491780 293460 549520 TRUE FALSE FALSE 404764.2772 338299.1813 306003.8582 392595.6212 360120.5693 340048.5871 376594.8296 371170.1839 352354.7302 412534.7772 0.981164012 0.82005009 0.741764998 0.951666727 0.872945965 0.824290717 0.912880199 0.899730652 0.854121276 1 18.65415622 -13.99996974 0.279902204 1.951101771 0.862197744 0.245754581 0.065811128 324.8170723 3.117654469 179.280365 0.076262579 1.00E-14 13.99996974 -1.088904027 RGS(ph)IDSPK ddPTM_HeLa_A485_30min_R1 1 RGSIDSPK 8 1 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 RGS(1)IDSPK 92.866 0.0022539 0 110320 117570 106380 189790 148970 137870 198360 211960 118910 272010 TRUE FALSE FALSE 134860.3034 131318.7888 145734.3888 200157.7471 134138.0237 145088.66 155978.7655 159976.4777 142774.1463 204202.913 0.660423015 0.6430799 0.713674387 0.98019046 0.656885946 0.710512195 0.76384202 0.783419175 0.699177814 1 17.63964392 -14 0.294965018 3.095556363 0.723671096 0.423947354 0.092691272 269.3639957 2.521487575 348.2811323 0.10087162 1.00E-14 14 -2.371885267 RGS(ph)IDSPK ddPTM_HeLa_A486_30min_R1 2 RGSIDSPK 8 1 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 RGS(1)IDSPK;RGS(1)IDSPK ; 84.198 0.0035031 304930000 366630 331420 178852 199579 302910 478930 583010 553280 340620 635680 TRUE FALSE FALSE 340931.1303 305157.0722 248108.2842 464629.9982 264916.2033 419844.486 437134.7315 427310.222 370145.2159 476501.5904 0.715487917 0.640411445 0.520687211 0.975085934 0.555960796 0.881097764 0.917383573 0.896765574 0.776797441 1 18.8621215 -6.110068189 0.702056138 0.913668632 0.639416458 0.368638189 0.130477798 0.811373385 0.888642793 0.089936884 0.107421617 7.76E-07 6.110068189 -0.274252174 RGS(ph)IGENQGEEK ddPTM_HeLa_A485_30min_R1 5 RGSIGENQGEEK 12 1 E7EX44;Q05682-3;Q05682-6;Q05682-2 E7EX44 CALD1 Caldesmon 1 0 RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK ;;;; 165.09 6.37E-10 3057940000 2158109 1659071 1476093 3054026 2588460 1997441 3122096 2490280 1969638 4191627 TRUE FALSE FALSE 2638172.902 1853084.921 2022161.226 3220859.707 2330743.834 2102023.922 2455034.684 1879534.925 2364926.28 3146731.53 0.838385123 0.588891967 0.642622736 1.023557198 0.740687221 0.668002307 0.780185618 0.597297516 0.751550063 1 21.58542267 -10.24606663 2.84975597 1.001892781 0.733375987 0.293662805 0.122355955 7279136.216 9124807.524 120458.6273 0.032110571 5.67E-11 10.24606663 -0.268516794 RGS(ph)IGENQGEEK ddPTM_HeLa_A486_30min_R1 5 RGSIGENQGEEK 12 1 E7EX44;Q05682-3;Q05682-6;Q05682-2 E7EX44 CALD1 Caldesmon 1 0 RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK ;;;; 194.67 3.03E-13 7658390000 7857700 8399840 4600210 5148880 8294660 10447910 13184250 12218370 6647250 11850390 TRUE FALSE FALSE 7306915.807 7734206.087 6381534.51 11986852.85 7254266.398 9158953.091 9885411.201 9436513.876 7223438.982 8882975.211 0.822575278 0.870677437 0.718400576 1.349418699 0.816648277 1.031068181 1.112849126 1.062314557 0.813177884 1 23.08261153 RGS(ph)IGENQGEEKGTK ddPTM_HeLa_A485_30min_R1 2 RGSIGENQGEEKGTK 15 2 E7EX44;Q05682-3;Q05682-6;Q05682-2 E7EX44 CALD1 Caldesmon 1 0 RGS(1)IGENQGEEKGTK;RGS(0.999)IGENQGEEKGT(0.001)K ; 142.93 6.69E-08 703680000 211980 307660 124149 142195 406220 528110 867380 1428630 216570 275120 TRUE FALSE FALSE 259134.2197 343638.1607 170076.8814 149962.7528 365775.3105 555761.023 682057.1772 1078256.252 260033.6125 206537.6472 1.254658524 1.663803986 0.823466732 0.726079506 1.770986139 2.690846102 3.302338273 5.220628138 1.259013144 1 17.65604525 -6.190022306 2.658078752 3.033235242 1.14248282 0.282436886 1.130625894 0.307514156 4.265767066 0.404444938 0.392847305 6.46E-07 6.190022306 -1.890752422 RGS(ph)IGENQGEEKGTK ddPTM_HeLa_A486_30min_R1 2 RGSIGENQGEEKGTK 15 2 E7EX44;Q05682-3;Q05682-6;Q05682-2 E7EX44 CALD1 Caldesmon 1 0 RGS(1)IGENQGEEKGTK;RGS(1)IGENQGEEKGTK ; 201.27 1.16E-25 636870000 609577 312611 199895 472385 645690 405815 921400 1001500 217782 991340 TRUE FALSE FALSE 566848.8002 287838.5659 277299.6974 1099736.153 564701.5394 355749.6713 690855.9744 773480.3126 236659.5191 743102.0115 0.762814245 0.387347311 0.373165047 1.479926223 0.759924655 0.478735982 0.929691972 1.040880391 0.318475143 1 19.50320075 RGS(ph)IGENQIK ddPTM_HeLa_A485_30min_R1 8 RGSIGENQIK 10 1 Q05682-5;Q05682-4;E9PGZ1;C9J813 Q05682-5 CALD1 Caldesmon 1 0 RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK ;;;;;;; 221.03 3.35E-17 22783550000 12367750 9424230 5534530 13622370 8637280 8534720 12338540 10248530 7326150 15144910 TRUE FALSE FALSE 15118913.32 10526311.72 7581982.958 14366525.58 7777322.076 8981584.742 9702310.132 7735061.948 8796441.106 11369562.66 1.329770878 0.925832597 0.66686672 1.263595268 0.684047602 0.789967478 0.853358253 0.68033065 0.773683331 1 23.43867342 -4.290454821 3.664519067 0.833953616 1.370203794 0.421632816 0.171231045 0.22669177 5.636123478 0.042279761 0.315627511 5.12E-05 4.290454821 0.536250178 RGS(ph)IGENQIK ddPTM_HeLa_A486_30min_R1 8 RGSIGENQIK 10 1 Q05682-5;Q05682-4;E9PGZ1;C9J813 Q05682-5 CALD1 Caldesmon 1 0 RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK;RGS(1)IGENQIK ;;;;;;; 195.71 6.96E-11 17915440000 8606130 8353270 3653700 3307269 5454470 8411210 10031840 8124990 6354140 10855520 TRUE FALSE FALSE 8002884.729 7691326.463 5068510.489 7699489.372 4770319.512 7373520.429 7521767.526 6275107.144 6904921.971 8137227.134 0.983490395 0.945202381 0.622879318 0.946205537 0.586234037 0.906146567 0.924364947 0.771160377 0.848559572 1 22.95610583 -10.29913462 11.48704407 1.000000001 0.832497722 0.12168788 0.130728828 4.81E-09 3.20E-10 0.123163141 0.029871449 5.02E-11 10.29913462 -0.167502279 RGS(ph)IGENQIKDEK ddPTM_HeLa_A485_30min_R1 6 RGSIGENQIKDEK 13 2 Q05682-5;Q05682-4;E9PGZ1;C9J813 Q05682-5 CALD1 Caldesmon 1 0 RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK ;;;;; 267.6 3.26E-42 29276800000 8374154 4687058 2887468 15074410 8585418 7433238 15144900 13471630 5733833 19629010 TRUE FALSE FALSE 10236955.67 5235168.661 3955662.571 15897886.85 7730623.639 7822430.848 11909068.39 10167691.62 6884560.689 14735859.05 0.694696904 0.355267287 0.268437867 1.078857146 0.524613028 0.530843219 0.808169266 0.68999653 0.467197784 1 23.81282783 -14 0.147795727 2.334353625 0.482011829 0.216860259 0.222148701 216.6868459 1.9131477 85.82140979 1.198545971 1.00E-14 14 -1.852341796 RGS(ph)IGENQIKDEK ddPTM_HeLa_A486_30min_R1 7 RGSIGENQIKDEK 13 2 Q05682-5;Q05682-4;E9PGZ1;C9J813 Q05682-5 CALD1 Caldesmon 1 0 RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK;RGS(1)IGENQIKDEK ;;;;;; 236.68 3.55E-35 71201560000 22059750 19851230 7548810 18676090 18734760 28717930 45559100 40410040 14129420 38997130 TRUE FALSE FALSE 20513475.44 18278146.24 10471911.4 43478881.36 16384871.71 25175003.78 34159731.3 31209556.04 15354169.5 29231994.82 0.701747369 0.625278786 0.35823458 1.487373052 0.560511584 0.86121402 1.168573391 1.067650574 0.525252197 1 24.80104495 -5.212972495 24.99999889 0.944571086 0.568106152 0.297196517 0.275406224 509.1810606 262642.9321 0.072839497 0.126161409 6.12E-06 5.212972495 -0.376464934 RGS(ph)IGENQVEVMVEEK ddPTM_HeLa_A485_30min_R1 4 RGSIGENQVEVMVEEK 16 1 Q05682 Q05682 CALD1 Caldesmon 1 0 RGS(1)IGENQVEVMVEEK;RGS(1)IGENQVEVMVEEK;RGS(1)IGENQVEVMVEEK;RGS(1)IGENQVEVMVEEK ;;; 186.63 4.63E-18 673982000 1048696 832449 642451 1431280 1258530 1045393 1686140 1497680 856287 1973900 TRUE FALSE FALSE 1281974.807 929796.6692 880120.3595 1509467.202 1133226.334 1100128.161 1325882.415 1130371.632 1028135.947 1481843.057 0.86512185 0.627459612 0.593936285 1.018641748 0.76474113 0.742405315 0.894752253 0.762814676 0.693822427 1 20.49896123 -11.55930466 2.219804779 4.95261226 0.77340697 0.24204838 0.120111972 5394485.373 519210.4098 106906000.4 0.032258238 2.76E-12 11.55930466 -4.17920529 RGS(ph)IGENQVEVMVEEK ddPTM_HeLa_A486_30min_R1 3 RGSIGENQVEVMVEEK 16 1 Q05682 Q05682 CALD1 Caldesmon 1 0 RGS(1)IGENQVEVMVEEK;RGS(1)IGENQVEVMVEEK;RGS(1)IGENQVEVMVEEK ;; 166.49 3.16E-12 790605000 691301 692095 385531 574468 702671 930875 1211149 1086565 570344 1073594 TRUE FALSE FALSE 642844.3698 637250.8716 534818.9281 1337390.536 614535.451 816033.1069 908106.71 839177.869 619781.8771 804759.0745 0.798803506 0.79185298 0.664570236 1.661852073 0.763626619 1.014009202 1.12842059 1.042769067 0.770145869 1 19.61819741 RGS(ph)IS(ph)SMSSVSSVLDEKDDDRIR ddPTM_HeLa_A486_30min_R1 1 RGSISSMSSVSSVLDEKDDDRIR 23 3 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 2 0 RGS(0.987)IS(0.828)S(0.182)MS(0.002)S(0.001)VSSVLDEKDDDRIR 76.777 0.0033947 337880000 76343 68109 53694 55144 89236 79746 109970 104800 58401 103030 TRUE FALSE FALSE 70991.74994 62711.79479 74485.75478 128378.0188 78043.18879 69907.74932 82454.34286 80939.32777 63463.2457 77230.61739 0.919217693 0.812006908 0.96445888 1.662268452 1.010521364 0.905181801 1.067638013 1.048021245 0.821736869 1 16.23688528 -7.697541748 11.09826262 0.911081668 1.053114979 0.057566516 0.222443478 1.583405079 267.7778863 0.160706972 0.060563451 2.01E-08 7.697541748 0.142033311 RGS(ph)ISSMSSVSSVLDEK ddPTM_HeLa_A486_30min_R1 1 RGSISSMSSVSSVLDEK 17 1 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 0 RGS(0.72)IS(0.081)S(0.134)MS(0.063)S(0.001)VSSVLDEK 127.54 9.56E-06 106390000 264150 218090 92022 81806 143390 215040 239700 222910 179540 350780 TRUE FALSE FALSE 245634.4491 200807.7541 127655.3828 190448.5022 125404.6891 188510.5512 179724.5247 172158.2591 195102.6718 262942.4048 0.934175867 0.763694826 0.485488002 0.724297408 0.476928357 0.716927159 0.683512896 0.654737524 0.741997746 1 18.0043873 -8.18851938 2.970439453 0.999961569 0.672584024 0.369832009 0.124590862 0.996665465 13.7939535 0.121001199 0.032298101 6.48E-09 8.18851938 -0.327377544 RGS(ph)ISSMSSVSSVLDEKDDDRIR ddPTM_HeLa_A485_30min_R1 2 RGSISSMSSVSSVLDEKDDDRIR 23 3 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 0 RGS(0.979)IS(0.004)S(0.017)MSSVSSVLDEKDDDRIR;RGS(0.946)IS(0.008)S(0.035)MS(0.008)S(0.002)VSSVLDEKDDDRIR ; 215.37 2.70E-30 1172650000 88750 106383 101387 154070 161836 136458 210220 235660 128140 249050 TRUE FALSE FALSE 108492.1313 118823.5664 138894.2704 162486.454 145723.0396 143602.7299 165304.7797 177864.0155 153856.5226 186966.4184 0.580276032 0.635534271 0.742883516 0.869067586 0.779407558 0.768066967 0.884141554 0.951315306 0.822909932 1 17.51241964 -3.159841518 0.255523414 0.962227506 8.48E-18 0.79655553 0.056189827 8.002854643 0.281160002 0.079174995 2.666617992 0.000692083 3.159841518 -0.962227506 RGS(ph)ISSMSSVSSVLDEKDDDRIR ddPTM_HeLa_A486_30min_R1 3 RGSISSMSSVSSVLDEKDDDRIR 23 3 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 0 RGS(1)ISSMSSVSSVLDEKDDDRIR;RGS(0.987)IS(0.002)S(0.011)MSSVSSVLDEKDDDRIR;RGS(0.988)IS(0.009)S(0.001)MS(0.002)S(0.001)VSSVLDEKDDDRIR ;; 265.7 9.66E-61 1963690000 221007 180871 111012 126271 227921 232604 313470 308428 174505 408590 TRUE FALSE FALSE 205515.5506 166538.1232 153998.8194 293965.2694 199333.0229 203907.6834 235036.4905 238205.6773 189631.2339 306276.4045 0.671013332 0.543751072 0.502809936 0.959803841 0.650827227 0.665763606 0.767399927 0.7777474 0.619150647 1 18.2244747 -14 0.128545192 1.99816592 0.557983928 0.385950798 0.121357631 158.9924677 1.292769874 41.3206513 0.980076701 1.00E-14 14 -1.440181993 RGS(ph)LCATCGLPVTGR ddPTM_HeLa_A485_30min_R1 4 RGSLCATCGLPVTGR 15 1 O43294-2;O43294 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 RGS(1)LCATCGLPVTGR;RGS(1)LCATCGLPVTGR;RGS(1)LCATCGLPVTGR;RGS(1)LCATCGLPVTGR ;;; 178.03 9.72E-14 2853770000 675341 577820 577477 844060 1043810 711710 1018620 1059580 681200 1126490 TRUE FALSE FALSE 825568.2756 645391.0226 791109.7731 890168.8605 939884.6114 748974.0351 800983.5156 799716.3436 817910.5917 845676.7745 0.976222004 0.763165127 0.935475346 1.052611219 1.111399343 0.885650473 0.947150897 0.945652485 0.967166909 1 19.68974683 -4.993726331 24.98354495 0.984878225 0.864600202 0.279003076 0.075295663 200.0384038 796591.7483 0.020135331 0.041743398 1.01E-05 4.993726331 -0.120278023 RGS(ph)LCATCGLPVTGR ddPTM_HeLa_A486_30min_R1 4 RGSLCATCGLPVTGR 15 1 O43294-2;O43294 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 RGS(1)LCATCGLPVTGR;RGS(1)LCATCGLPVTGR;RGS(1)LCATCGLPVTGR;RGS(1)LCATCGLPVTGR ;;; 150.54 3.06E-08 3448010000 854340 975810 744570 559389 1279250 1278180 1883710 1851820 757470 922140 TRUE FALSE FALSE 794455.1778 898483.2618 1032887.444 1302285.862 1118794.536 1120491.147 1412385.834 1430201.011 823128.1095 691230.1419 1.149335264 1.299832295 1.494274311 1.884011971 1.618555773 1.621010253 2.043293179 2.069066327 1.190816285 1 19.3988066 -4.826996266 2.486411904 1.693263065 1.186948665 0.182627205 0.324732526 0.395692919 4.840069192 0.086804634 0.258325423 1.49E-05 4.826996266 -0.5063144 RGS(ph)LEMSSDGEPLSR ddPTM_HeLa_A485_30min_R1 4 RGSLEMSSDGEPLSR 15 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 RGS(1)LEMSSDGEPLSR;RGS(1)LEMSSDGEPLSR;RGS(1)LEMSSDGEPLSR;RGS(1)LEMSSDGEPLSR ;;; 195.55 4.95E-19 2319180000 656380 762610 755660 726380 1034650 778560 959540 1104370 753340 971260 TRUE FALSE FALSE 802389.4665 851790.6057 1035210.08 766060.3001 931636.6131 819324.1977 754526.4403 833521.5259 904528.428 729142.7567 1.100455925 1.16820828 1.419763236 1.050631434 1.277714967 1.12368146 1.03481305 1.14315272 1.240536808 1 19.47584178 -6.432103332 9.244393667 1.111283768 1.204765654 0.154859062 0.111119529 0.818592184 78.05797459 0.038808837 0.03418414 3.70E-07 6.432103332 0.093481886 RGS(ph)LEMSSDGEPLSR ddPTM_HeLa_A486_30min_R1 3 RGSLEMSSDGEPLSR 15 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 RGS(1)LEMSSDGEPLSR;RGS(1)LEMSSDGEPLSR;RGS(1)LEMSSDGEPLSR ;; 204.21 1.21E-25 2469580000 663590 710530 623440 276537 930230 720550 861810 856300 654720 790780 TRUE FALSE FALSE 617075.7678 654225.0151 864852.6643 643792.1114 813551.8793 631655.867 646176.0227 661339.1829 711471.6568 592763.5409 1.041015051 1.103686327 1.45901798 1.086085879 1.372472872 1.065611873 1.090107569 1.115688023 1.200262175 1 19.17709719 RGS(ph)LGEEGSEPPPPPPLPLAR ddPTM_HeLa_A485_30min_R1 4 RGSLGEEGSEPPPPPPLPLAR 21 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RGS(1)LGEEGSEPPPPPPLPLAR;RGS(0.981)LGEEGS(0.019)EPPPPPPLPLAR;RGS(1)LGEEGSEPPPPPPLPLAR;RGS(0.999)LGEEGS(0.001)EPPPPPPLPLAR ;;; 148.85 8.88E-10 3635090000 466490 571970 486235 626980 665410 599282 778110 789070 557600 868620 TRUE FALSE FALSE 570259.0911 638856.916 666113.5604 661230.3298 599159.444 630659.4789 611860.4419 595549.3453 669505.2054 652089.0198 0.874511108 0.979708133 1.021507095 1.0140185 0.918830751 0.967137093 0.93830815 0.913294546 1.026708295 1 19.3147094 RGS(ph)LGEEGSEPPPPPPLPLAR ddPTM_HeLa_A486_30min_R1 4 RGSLGEEGSEPPPPPPLPLAR 21 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RGS(1)LGEEGSEPPPPPPLPLAR;RGS(1)LGEEGSEPPPPPPLPLAR;RGS(1)LGEEGSEPPPPPPLPLAR;RGS(1)LGEEGSEPPPPPPLPLAR ;;; 164.62 9.28E-14 4304450000 603800 634870 487940 272913 688740 647280 821850 791790 561900 873240 TRUE FALSE FALSE 561476.738 584560.589 676883.4355 635355.2563 602351.807 567425.1747 616214.4374 611516.7017 610605.9444 654575.0202 0.857772938 0.893038339 1.034080762 0.970637798 0.920218139 0.866860417 0.941396201 0.934219429 0.932828057 1 19.32019902 -8.777906334 1.38183213 1.000052988 0.929195241 0.167627865 0.048228839 16.39898527 26.83992108 0.051329651 0.014654018 1.67E-09 8.777906334 -0.070857748 RGS(ph)LLGSMK ddPTM_HeLa_A485_30min_R1 1 RGSLLGSMK 9 1 Q9HDC5 Q9HDC5 JPH1 Junctophilin-1 1 0 RGS(1)LLGSMK 98.337 0.0012928 140460000 250110 189240 123660 316130 195710 200150 259090 354680 158580 571740 TRUE FALSE FALSE 305746.1066 211369.9718 169406.9799 333399.3814 176224.4252 210629.5445 203733.3049 267694.1739 190405.5514 429215.7401 0.71233666 0.492456245 0.394689579 0.776764108 0.410573073 0.490731175 0.474664105 0.623682099 0.443612696 1 18.71134346 -10.61506958 3.919395031 1.014475026 0.533002635 0.566175357 0.121962061 165404928.6 277173.9812 21603892.89 0.028157316 2.43E-11 10.61506958 -0.481472391 RGS(ph)LPDQK ddPTM_HeLa_A485_30min_R1 1 RGSLPDQK 8 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 RGS(1)LPDQK 93.345 0.0022172 0 122500 109210 89259 173980 155660 131280 193810 185070 99560 229590 TRUE FALSE FALSE 149749.7024 121981.1595 122279.6185 183484.0869 140161.9438 138153.6178 152400.9102 139681.2923 119540.7788 172357.4383 0.868832259 0.70772205 0.709453678 1.064555662 0.813205077 0.801552977 0.884214292 0.810416386 0.693563214 1 17.39504404 -11.47671789 2.238419498 3.110742625 0.819166677 0.218533425 0.103715502 6733682.939 506587.1826 72510960.55 0.027711425 3.34E-12 11.47671789 -2.291575947 RGS(ph)LPDQK ddPTM_HeLa_A486_30min_R1 1 RGSLPDQK 8 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 RGS(1)LPDQK 61.344 0.018443 137650000 150840 127420 84798 74013 135070 170140 194010 175030 111520 200760 TRUE FALSE FALSE 140266.8949 117322.7751 117634.0566 172306.0044 118128.2611 149149.8567 145466.646 135179.4899 121186.6434 150488.3893 0.932077854 0.779613469 0.781681943 1.144978727 0.784965948 0.991105409 0.96663036 0.89827189 0.805288993 1 17.19929266 RGS(ph)LSNAGDPEIVK ddPTM_HeLa_A485_30min_R1 5 RGSLSNAGDPEIVK 14 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 RGS(0.999)LS(0.001)NAGDPEIVK;RGS(0.998)LS(0.002)NAGDPEIVK;RGS(0.993)LS(0.007)NAGDPEIVK;RGS(0.997)LS(0.003)NAGDPEIVK;RGS(0.5)LS(0.5)NAGDPEIVK ;;;; 200.73 4.90E-22 12865230000 10660810 8298020 6069370 13186340 10491450 8573750 12810880 10456690 7875340 16314470 TRUE FALSE FALSE 13032270.41 9268401.256 8314682.531 13906676.36 9446884.4 9022658.292 10073730.83 7892170.382 9455848.501 12247572.87 1.064069636 0.756754122 0.678884103 1.135463859 0.771327062 0.736689496 0.82250834 0.644386481 0.77205897 1 23.54599254 -5.912901719 24.61625461 0.772142853 0.890496335 0.116672493 0.149946806 42.91416749 12119.6063 0.045882814 0.052026223 1.22E-06 5.912901719 0.118353482 RGS(ph)LSNAGDPEIVK ddPTM_HeLa_A486_30min_R1 4 RGSLSNAGDPEIVK 14 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 RGS(0.994)LS(0.006)NAGDPEIVK;RGS(0.998)LS(0.002)NAGDPEIVK;RGS(0.994)LS(0.006)NAGDPEIVK;RGS(0.995)LS(0.005)NAGDPEIVK ;;; 183.56 1.23E-17 10035200000 7080700 7155000 3565660 2978810 5965000 7620200 8745300 8228500 5471150 8969900 TRUE FALSE FALSE 6584379.495 6588011.742 4946379.044 6934820.221 5216814.079 6680097.201 6557133.442 6355050.177 5945393.687 6723778.656 0.979267735 0.979807944 0.735654651 1.031387346 0.775875344 0.993503436 0.975215541 0.945160527 0.884233999 1 22.6808408 RGS(ph)LSQEMAK ddPTM_HeLa_A485_30min_R1 2 RGSLSQEMAK 10 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RGS(0.997)LS(0.003)QEMAK;RGS(0.999)LS(0.001)QEMAK ; 167.89 2.09E-07 519270000 934220 766800 559210 1035430 849800 830020 976070 811780 542200 961680 TRUE FALSE FALSE 1142034.016 856470.5897 766085.0497 1091992.919 765190.9282 873478.5637 767524.6707 612689.6822 651014.5666 721950.8744 1.581872197 1.186328073 1.061131826 1.512558483 1.059893346 1.209886427 1.063125897 0.848658411 0.901743581 1 19.46154115 -6.686525475 1.080657774 0.898903536 1.295720264 0.502287605 0.161001225 0.438977192 1.031110608 0.108189161 0.065692288 2.06E-07 6.686525475 0.396816728 RGS(ph)LSQEMAK ddPTM_HeLa_A486_30min_R1 1 RGSLSQEMAK 10 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RGS(0.999)LS(0.001)QEMAK 212.11 1.23E-14 236410000 440910 299420 170670 123550 255610 363330 430270 384930 281570 524990 TRUE FALSE FALSE 410004.4859 275692.8687 236757.9947 287630.6439 223549.0103 318506.0387 322611.8951 297289.842 305976.7143 393529.0869 1.041865772 0.700565417 0.601627688 0.730900595 0.568062229 0.809358315 0.81979174 0.755445663 0.777519946 1 18.58611075 -8.913595453 0.617785211 1.012898156 0.734055164 0.259649023 0.123339996 5.191625488 2.455294279 0.294555424 0.051233315 1.22E-09 8.913595453 -0.278842992 RGS(ph)LTLTISGESPK ddPTM_HeLa_A485_30min_R1 1 RGSLTLTISGESPK 14 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(0.697)LT(0.296)LT(0.008)ISGESPK 100.27 0.00039876 192200000 287450 244720 180010 386330 316980 307490 485990 471910 240300 546940 TRUE FALSE FALSE 351392.2608 273337.8752 246603.1898 407434.2297 285420.3582 323589.7009 382154.2663 356173.3326 288526.0058 410597.9237 0.855806229 0.66570691 0.600595316 0.99229491 0.695133467 0.788093856 0.930726251 0.867450399 0.702697187 1 18.64736681 -14 0.102151949 1.656044925 0.653887424 0.224340662 0.117885539 270.5390095 1.868074155 37.85663036 1.877128801 1.00E-14 14 -1.0021575 RGS(ph)LTLTISGESPK ddPTM_HeLa_A486_30min_R1 1 RGSLTLTISGESPK 14 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(0.815)LT(0.174)LT(0.011)ISGESPK 172.6 1.61E-12 141090000 335700 283380 144990 170180 304020 335550 428380 382180 244840 454430 TRUE FALSE FALSE 312169.1636 260923.9367 201134.011 396187.6404 265886.9767 294153.2526 321194.7931 295165.9569 266062.9283 340637.7702 0.916425573 0.76598651 0.590463033 1.163076074 0.780556356 0.863536808 0.94292184 0.866509773 0.781072892 1 18.37787889 -14 0.128088346 1.437576872 0.795145083 0.080302761 0.140651482 405.1459337 3.286708371 46.77234586 1.123506194 1.00E-14 14 -0.642431789 RGS(ph)MEQAPAVALPPTHK ddPTM_HeLa_A486_30min_R1 1 RGSMEQAPAVALPPTHK 17 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 RGS(1)MEQAPAVALPPTHK 98.121 0.00043779 123380000 84036 83885 51802 44242 76092 95679 89361 105240 71969 79169 TRUE FALSE FALSE 78145.51036 77237.6471 71861.12171 102997.6119 66547.83183 83875.09777 67001.93264 81279.14937 78207.33087 59344.5671 1.316809848 1.301511678 1.210913235 1.735586203 1.121380357 1.413357648 1.129032292 1.369613991 1.317851569 1 15.85682834 -6.377441944 1.675201811 1.242150107 1.358209687 0.09899448 0.181694781 1.100801484 6.142003322 0.079701233 0.066558456 4.19E-07 6.377441944 0.116059581 RGS(ph)MFYDEDGDLAHEFYEETIVTK ddPTM_HeLa_A485_30min_R1 2 RGSMFYDEDGDLAHEFYEETIVTK 24 1 O75896 O75896 TUSC2 Tumor suppressor candidate 2 1 0 RGS(0.474)MFY(0.433)DEDGDLAHEFY(0.075)EET(0.018)IVTK;RGS(1)MFYDEDGDLAHEFYEETIVTK ; 146.03 1.91E-09 129085000 62635 40807 42413 62377 54539 57854 94245 90056 46799 106141 TRUE FALSE FALSE 76567.93966 45579.02368 58103.33365 65784.49756 49108.90566 60883.14598 74108.78584 67969.6248 56191.13003 79682.00208 0.960918873 0.572011527 0.729190183 0.82558791 0.616311142 0.764076509 0.930056774 0.853011007 0.705192246 1 16.28196628 -6.58762315 7.610285428 0.858915434 0.731055595 0.204223488 0.122019573 0.391186957 39.35228493 0.04494981 0.034757223 2.58E-07 6.58762315 -0.127859839 RGS(ph)MFYDEDGDLAHEFYEETIVTK ddPTM_HeLa_A486_30min_R1 4 RGSMFYDEDGDLAHEFYEETIVTK 24 1 O75896 O75896 TUSC2 Tumor suppressor candidate 2 1 0 RGS(0.51)MFY(0.44)DEDGDLAHEFY(0.05)EETIVTK;RGS(0.994)MFY(0.006)DEDGDLAHEFYEETIVTK;RGS(0.537)MFY(0.461)DEDGDLAHEFY(0.002)EETIVTK;RGS(0.997)MFY(0.003)DEDGDLAHEFYEETIVTK ;;; 102.6 0.00057662 292660000 169937 186122 128158 103487.3 206618 228750 274296 251561 189041 274481 TRUE FALSE FALSE 158025.2939 171373.0149 177784.2098 240923.6644 180702.0438 200529.1508 205664.2396 194286.0518 205427.2261 205749.171 0.768048265 0.832922019 0.864082265 1.170958129 0.878263776 0.974629204 0.999587209 0.944285952 0.998435255 1 17.65052709 -5.016143819 23.92244346 0.989626361 0.812489299 0.56552596 0.070880485 281.9598972 417820.3384 0.018493873 0.033297923 9.64E-06 5.016143819 -0.177137062 RGS(ph)MNNELLSPEFGPVRDPLADGVEGLGR ddPTM_HeLa_A485_30min_R1 1 RGSMNNELLSPEFGPVRDPLADGVEGLGR 29 2 O00562-2;O00562 O00562-2 PITPNM1 Membrane-associated phosphatidylinositol transfer protein 1 1 0 RGS(0.893)MNNELLS(0.107)PEFGPVRDPLADGVEGLGR 97.437 0.00067965 69684000 22924 24694 22543 28552 25804 21723 36971 32112 26425 40446 TRUE FALSE FALSE 28023.36471 27581.74849 30882.59379 30111.72346 23234.86316 22860.38269 29071.84382 24236.48165 31728.25512 30363.55655 0.922927611 0.908383326 1.017094086 0.991706074 0.765222055 0.752888834 0.957458451 0.798209578 1.04494528 1 14.89005317 -5.71366474 24.99996585 0.873235653 0.960415105 0.114092492 0.096296638 227.2391932 118910.5675 0.028334181 0.036579186 1.93E-06 5.71366474 0.087179452 RGS(ph)MSYLAAVEEEVEESSVK ddPTM_HeLa_A485_30min_R1 2 RGSMSYLAAVEEEVEESSVK 20 1 A0A0C4DGK3;G3V5X4;A0A0A0MRE3;Q8WXH0-7;Q8WXH0;Q8WXH0-2 A0A0C4DGK3 SYNE2 Nesprin-2 1 0 RGS(0.401)MS(0.401)Y(0.199)LAAVEEEVEESSVK;RGS(0.827)MS(0.155)Y(0.018)LAAVEEEVEESSVK ; 153.17 5.72E-10 59755000 19770.4 15362.8 8780.5 25055.5 17986.6 14998.3 23737.1 31238.8 13057.4 56357 TRUE FALSE FALSE 24168.25727 17159.34582 12028.77234 26424.21852 16195.79095 15783.5878 18665.47467 23577.43532 15677.90041 42308.23707 0.571242362 0.405579315 0.284312776 0.624564396 0.382804675 0.373061817 0.441178266 0.557277659 0.370563784 1 15.36865095 -10.570405 3.045657257 1.027285141 0.444133354 0.72907924 0.101378653 50903012.85 56633121.57 11283930.02 0.024800025 2.69E-11 10.570405 -0.583151787 RGS(ph)MSYLAAVEEEVEESSVK ddPTM_HeLa_A486_30min_R1 2 RGSMSYLAAVEEEVEESSVK 20 1 A0A0C4DGK3;G3V5X4;A0A0A0MRE3;Q8WXH0-7;Q8WXH0;Q8WXH0-2 A0A0C4DGK3 SYNE2 Nesprin-2 1 0 RGS(0.351)MS(0.351)Y(0.298)LAAVEEEVEESSVK;RGS(0.991)MS(0.009)YLAAVEEEVEESSVK ; 178.85 4.53E-19 91669000 94530 83960 53131 22590.4 83282 66006 79861 71979 56536 77357 TRUE FALSE FALSE 87903.93515 77306.70382 73704.7461 52591.59286 72835.99499 57862.85082 59878.93312 55590.95299 61436.586 57986.30369 1.515943069 1.333189027 1.271071639 0.906965775 1.256089634 0.997870999 1.032639249 0.958691095 1.059501677 1 15.82342456 -4.43093689 0.822019157 1.020342113 1.733384073 0.745373484 0.094918617 0.951287155 0.592406559 0.035263618 0.591000636 3.71E-05 4.43093689 0.71304196 RGS(ph)PAPANPGR ddPTM_HeLa_A485_30min_R1 5 RGSPAPANPGR 11 1 E9PJN1;O75676-2;O75676 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 RGS(1)PAPANPGR;RGS(1)PAPANPGR;RGS(1)PAPANPGR;RGS(1)PAPANPGR;RGS(1)PAPANPGR ;;;; 86.944 0.0018937 1120458000 202331 388598 530588 196650 396930 267798 287205 296820 326734 285671 TRUE FALSE FALSE 247338.8329 434041.1557 726874.5808 207392.4916 357410.2555 281819.4892 225841.3055 224024.4296 392306.5168 214458.4771 1.153318051 2.023893677 3.389348795 0.967051964 1.666570892 1.314098156 1.053077074 1.04460515 1.829288924 1 17.71033882 RGS(ph)PAPANPGR ddPTM_HeLa_A486_30min_R1 2 RGSPAPANPGR 11 1 E9PJN1;O75676-2;O75676 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 RGS(1)PAPANPGR;RGS(1)PAPANPGR ; 92.063 0.0014723 1067460000 343409 396294 422730 106228 414233 320759 355690 408165 308137 372314 TRUE FALSE FALSE 319337.8025 364890.2202 586422.3771 247304.1525 362276.0346 281187.0158 266692.5999 315234.7397 334846.5633 279084.151 1.144234817 1.307455901 2.101238551 0.886127541 1.298088885 1.007534877 0.95559923 1.129532933 1.199805012 1 18.09034067 RGS(ph)PHRGSLDR ddPTM_HeLa_A485_30min_R1 5 RGSPHRGSLDR 11 2 A0A0A0MR69;Q9P219-2;Q9P219 A0A0A0MR69 CCDC88C Protein Daple 1 0 RGS(0.999)PHRGS(0.001)LDR;RGS(1)PHRGSLDR;RGS(1)PHRGSLDR;RGS(0.999)PHRGS(0.001)LDR;RGS(0.995)PHRGS(0.005)LDR ;;;; 92.773 0.0010755 203064000 35661.7 70768.7 44693.5 28344.5 54906 64022.2 67740.2 91063.1 43556 40673.6 TRUE FALSE FALSE 43594.52213 79044.48386 61227.4855 29892.88826 49439.36585 67374.30339 53266.95288 68729.73194 52297.28968 30534.42006 1.427717377 2.588701004 2.005195624 0.978989881 1.619135577 2.206503456 1.74448877 2.250893641 1.712732371 1 14.89814882 -8.029923276 22.72764308 0.999999979 1.861609884 0.258276096 0.431226588 1558.470277 1183706.086 0.42863041 0.110671896 9.33E-09 8.029923276 0.861609905 RGS(ph)PHRGSLDR ddPTM_HeLa_A486_30min_R1 4 RGSPHRGSLDR 11 2 A0A0A0MR69;Q9P219-2;Q9P219 A0A0A0MR69 CCDC88C Protein Daple 1 0 RGS(1)PHRGSLDR;RGS(1)PHRGSLDR;RGS(1)PHRGSLDR;RGS(1)PHRGSLDR ;;; 92.935 0.0010653 100626000 37080.9 24693.1 23428.5 6867.6 33563.3 23119.5 33119.3 27349.5 18310.6 37738.8 TRUE FALSE FALSE 34481.7204 22736.32883 32500.64264 15988.11987 29353.47795 20267.25115 24832.50084 21122.61589 19897.77755 28288.75884 1.218919522 0.803723096 1.148888957 0.565175728 1.037637533 0.716441865 0.877822211 0.746678778 0.703381073 1 14.78794126 -1.000000003 0.741888485 0.812945074 62.94316777 0.296776126 0.169186307 437.2696267 1.948083242 0.058651237 45354.13901 0.099999999 1.000000003 62.13022269 RGS(ph)PS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 RGSPSPPR 8 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 2 0 RGS(1)PS(1)PPR 54.7 0.020096 361020000 67112 69752 76892 13921 87258 69569 49473 59010 72202 37350 TRUE FALSE FALSE 62407.79537 64224.59749 106666.6416 32408.79153 76313.28799 60986.28411 37094.33213 45574.71118 78460.52749 27997.31689 2.229063435 2.293955443 3.809887999 1.157567765 2.725735766 2.17829031 1.324924537 1.627824243 2.80243024 1 14.77300095 -6.054145307 0.941926027 1.752006637 2.588153158 0.166702202 0.75213122 1.075713488 2.071145221 0.406080447 0.462353075 8.83E-07 6.054145307 0.836146521 RGS(ph)PSAAFTFPDTDDFGK ddPTM_HeLa_A485_30min_R1 3 RGSPSAAFTFPDTDDFGK 18 1 Q9ULT0;Q9ULT0-4;H7C055;Q9ULT0-3 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 RGS(0.996)PS(0.004)AAFTFPDTDDFGK;RGS(0.998)PS(0.002)AAFTFPDTDDFGK;RGS(0.983)PS(0.017)AAFTFPDTDDFGK ;; 244.98 9.22E-46 939710000 1008395 720667 613480 1426443 1104587 966685 1458820 1072520 787494 2170070 TRUE FALSE FALSE 1232708.989 804942.7367 840431.781 1504365.969 994610.4398 1017299.132 1147131.19 809482.7884 945536.8225 1629111.486 0.756675648 0.494099234 0.515883528 0.923427268 0.61052325 0.624450285 0.704145296 0.49688606 0.580400317 1 20.63565391 -9.941291853 4.078989668 1.000017132 0.632026106 0.430156344 0.12633846 30066590.38 62512430.36 7675.597415 0.032931682 1.14E-10 9.941291853 -0.367991026 RGS(ph)PSAAFTFPDTDDFGK ddPTM_HeLa_A486_30min_R1 5 RGSPSAAFTFPDTDDFGK 18 1 Q9ULT0;Q9ULT0-4;H7C055;Q9ULT0-3 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 RGS(0.995)PS(0.005)AAFTFPDTDDFGK;RGS(0.996)PS(0.004)AAFTFPDTDDFGK;RGS(0.994)PS(0.006)AAFTFPDTDDFGK;RGS(0.686)PS(0.314)AAFTFPDTDDFGK;RGS(0.999)PS(0.001)AAFTFPDTDDFGK ;;;; 275.33 2.72E-69 2236265000 2692999 2762770 1534890 1348629 2590520 3253680 3816920 3580870 2469456 4347490 TRUE FALSE FALSE 2504233.677 2543838.043 2129240.514 3139676.468 2265592.826 2852274.043 2861886.245 2765584.071 2683510.434 3258850.207 0.768440867 0.780593732 0.653371704 0.963430741 0.695212324 0.875239383 0.878188951 0.848637984 0.82345314 1 21.63593161 -14 0.066138306 1.686145705 0.549336197 0.397017637 0.080338996 339.425728 1.622363415 36.08540345 5.01898608 1.00E-14 14 -1.136809508 RGS(ph)PTTGFIEQK ddPTM_HeLa_A485_30min_R1 2 RGSPTTGFIEQK 12 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(0.961)PT(0.039)TGFIEQK;RGS(0.982)PT(0.018)TGFIEQK ; 213.02 4.63E-18 1539780000 1684240 1384700 1024640 2293160 1843710 1609090 2544350 2148300 1406460 3230400 TRUE FALSE FALSE 2058893.377 1546628.62 1403696.975 2418429.524 1660143.759 1693339.464 2000728.837 1621426.057 1688723.621 2425120.731 0.848985929 0.637753247 0.578815296 0.997240877 0.684561283 0.698249552 0.825001746 0.668596015 0.696346206 1 21.20962514 -10.52031145 3.327981162 1.006705652 0.735202014 0.317404553 0.115544063 82890351.98 101774711 5005736.678 0.028382867 3.02E-11 10.52031145 -0.271503638 RGS(ph)PTTGFIEQK ddPTM_HeLa_A486_30min_R1 4 RGSPTTGFIEQK 12 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(0.962)PT(0.031)T(0.006)GFIEQK;RGS(0.86)PT(0.14)TGFIEQK;RGS(0.97)PT(0.03)TGFIEQK;RGS(0.992)PT(0.008)TGFIEQK ;;; 184.37 3.68E-13 3456800000 3788980 3667270 1811300 1552390 3266290 4151910 4826310 4591680 2923310 5132430 TRUE FALSE FALSE 3523392.068 3376662.169 2512683.868 3614042.373 2856601.451 3639689.558 3618716.19 3546254.7 3176704.865 3847236.121 0.915824233 0.877685191 0.653114025 0.939386682 0.742507442 0.946053074 0.940601532 0.921766844 0.825710917 1 21.87539095 -6.286188152 24.93391326 0.922797849 0.825318801 0.249378963 0.087579707 1149.871963 1158469.889 0.030193812 0.026640343 5.17E-07 6.286188152 -0.097479048 RGS(ph)PVPPVPER ddPTM_HeLa_A485_30min_R1 4 RGSPVPPVPER 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER ;;; 87.566 0.0018425 2487450000 1111260 1192890 1129480 1459640 1482000 1206920 1639580 1599230 1072260 2047350 TRUE FALSE FALSE 1358455.953 1332388.109 1547321.654 1539376.437 1334446.876 1270112.465 1289270.339 1207016.335 1287452.747 1536983.324 0.883845603 0.866885208 1.006726377 1.00155702 0.868224694 0.826367108 0.838831703 0.78531518 0.837649132 1 20.55167008 -5.943658473 8.131884248 0.84348446 0.939167527 0.244856493 0.067064121 0.324029048 41.50159329 0.02103219 0.023850089 1.14E-06 5.943658473 0.095683067 RGS(ph)PVPPVPER ddPTM_HeLa_A486_30min_R1 4 RGSPVPPVPER 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER;RGS(1)PVPPVPER ;;; 99.927 0.00082483 2547540000 1431800 1606290 1158750 633255 1593570 1552430 1840010 1795580 1393460 1868490 TRUE FALSE FALSE 1331438.214 1479001.73 1607449.032 1474249.643 1393689.591 1360906.971 1379620.036 1386765.631 1514246.235 1400607.942 0.950614497 1.055971258 1.147679507 1.052578383 0.995060466 0.971654472 0.985015146 0.990116927 1.081134977 1 20.41762174 -5.729330158 6.775878841 1.000758013 1.059256009 0.160515807 0.052310785 0.304931667 43.13534385 0.016315544 0.020710922 1.86E-06 5.729330158 0.058497996 RGS(ph)PVPPVPERR ddPTM_HeLa_A485_30min_R1 2 RGSPVPPVPERR 12 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(1)PVPPVPERR;RGS(1)PVPPVPERR ; 93.754 0.00078946 1001020000 146555 191980 159688 164013.4 236889 185817 236093 266895 154489 233076 TRUE FALSE FALSE 179155.6541 214430.391 218763.2364 172973.0367 213303.4994 195546.0908 185649.8018 201438.5828 185493.5252 174974.4426 1.023896127 1.225495494 1.250258227 0.988561724 1.219055173 1.117569445 1.061010963 1.151245746 1.060117823 1 17.41678469 -8.32422779 0.412920421 0.988591372 1.150296079 0.193867491 0.083171836 3.011504811 1.120030746 0.153415362 0.060318007 4.74E-09 8.32422779 0.161704707 RGS(ph)PVPPVPERR ddPTM_HeLa_A486_30min_R1 2 RGSPVPPVPERR 12 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(1)PVPPVPERR;RGS(1)PVPPVPERR ; 105.39 0.00025337 814180000 163520 174661 114885 59865 185134 142331 181454 165716 111350 189238 TRUE FALSE FALSE 152058.0924 160820.2263 159371.5487 139368.7454 161912.7674 124771.6483 136052.29 127986.0844 121001.9077 141851.5731 1.071952106 1.133721839 1.12350921 0.982497003 1.141423841 0.879592983 0.959117245 0.902253543 0.853017736 1 17.11402262 -6.264847871 24.99208868 0.915207202 1.08883556 0.697357788 0.056566002 168.5821418 1236090.589 0.019165909 0.017571164 5.43E-07 6.264847871 0.173628357 RGS(ph)QNSSEHRPPASSTSEDVK ddPTM_HeLa_A485_30min_R1 1 RGSQNSSEHRPPASSTSEDVK 21 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 RGS(0.988)QNS(0.01)S(0.002)EHRPPASSTSEDVK 120.85 6.95E-06 210330000 70128 63249 39896 58878 78637 54979 91197 72712 50269 96836 TRUE FALSE FALSE 85727.73166 70645.42036 54655.19061 62094.35605 70807.62417 57857.61543 71712.01594 54879.26799 60357.52721 72696.56733 1.17925419 0.971784817 0.751826291 0.854158021 0.974016061 0.795878231 0.9864567 0.754908657 0.830266537 1 16.14959962 -4.37487483 3.302574216 0.864304808 1.189252674 0.533517831 0.087979309 0.194657194 3.430701157 0.021552246 0.133075266 4.22E-05 4.37487483 0.324947866 RGS(ph)QNSSEHRPPASSTSEDVK ddPTM_HeLa_A486_30min_R1 2 RGSQNSSEHRPPASSTSEDVK 21 2 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 RGS(0.974)QNS(0.021)S(0.004)EHRPPASSTSEDVK;RGS(0.923)QNS(0.034)S(0.043)EHRPPASSTSEDVK ; 106.45 4.93E-05 337510000 118745 98115 52210 5894.7 83789 86170 117932 102654 80412 79350 TRUE FALSE FALSE 110421.5887 90340.01007 72427.11023 13723.1595 73279.40232 75539.22151 88424.16624 79281.92512 87382.1769 59480.24352 1.856441436 1.51882381 1.217666673 0.230717944 1.231995668 1.269988437 1.486614059 1.332911912 1.469095816 1 15.86012293 -4.561646617 2.895375388 1.153185888 1.824608768 0.308506253 0.338068234 0.365696844 5.800441347 0.097189388 0.413343417 2.74E-05 4.561646617 0.67142288 RGS(ph)QPS(ph)TPRLS(ph)PTFPESIEHPLAR ddPTM_HeLa_A485_30min_R1 2 RGSQPSTPRLSPTFPESIEHPLAR 24 2 M9T4I7;Q5U5Q3 M9T4I7 MEX3C RNA-binding E3 ubiquitin-protein ligase MEX3C 3 0 RGS(0.995)QPS(0.502)T(0.502)PRLS(0.905)PT(0.095)FPESIEHPLAR;RGS(0.991)QPS(0.505)T(0.505)PRLS(0.959)PT(0.041)FPESIEHPLAR ; 151.5 1.97E-09 518080000 70455 79040 77396 87387 107765 87683 128263 114627 77454 117754 TRUE FALSE FALSE 86127.47168 88283.04044 106028.0011 92160.73053 97035.53821 92273.9463 100858.5622 86514.54852 92998.30735 88400.0949 0.97429162 0.998675856 1.19941049 1.042541081 1.097685905 1.043821801 1.140932737 0.978670313 1.052015922 1 16.4317603 -7.285230438 24.9907783 1.011507342 1.072085148 0.158813364 0.064095974 1613.862378 1695235.826 0.035149446 0.016900298 5.19E-08 7.285230438 0.060577806 RGS(ph)QPS(ph)TPRLS(ph)PTFPESIEHPLAR ddPTM_HeLa_A486_30min_R1 1 RGSQPSTPRLSPTFPESIEHPLAR 24 2 M9T4I7;Q5U5Q3 M9T4I7 MEX3C RNA-binding E3 ubiquitin-protein ligase MEX3C 3 0 RGS(0.991)QPS(0.505)T(0.505)PRLS(0.994)PT(0.006)FPESIEHPLAR 206.11 1.06E-28 422320000 66995 68394 62170 26129 80762 71536 89768 86367 62925 92543 TRUE FALSE FALSE 62298.99646 62974.21035 86243.88897 60829.63249 70632.07688 62710.61564 67307.09693 66703.11948 68379.38966 69369.63045 0.898073063 0.907806629 1.243251383 0.876891402 1.018198835 0.904006771 0.970267486 0.961560831 0.985725154 1 16.08201658 RGS(ph)RS(ph)S(ph)PEPK ddPTM_HeLa_A485_30min_R1 2 RGSRSSPEPK 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 RGS(1)RS(1)S(1)PEPK;RGS(1)RS(1)S(1)PEPK ; 97.45 0.002172 3749800000 2020120 1631940 931140 4792900 1647330 1931820 3279500 3425500 1602510 5870700 TRUE FALSE FALSE 2469488.725 1822781.187 1275607.434 5054723.991 1483316.041 2032967.108 2578808.034 2585390.754 1924119.058 4407242.532 0.560325125 0.413587674 0.289434363 1.146913054 0.336563289 0.4612787 0.585129594 0.586623208 0.43658116 1 22.07144486 -10.2641117 3.571974019 1.00106844 0.537318776 0.276069905 0.225796429 75623690.36 112252106.3 883089.5201 0.057299552 5.44E-11 10.2641117 -0.463749664 RGS(ph)RS(ph)S(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 RGSRSSPEPK 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 RGS(1)RS(1)S(1)PEPK;RGS(1)RS(1)S(1)PEPK ; 110.14 9.83E-05 1749400000 3087120 2259340 1379000 3070350 1944940 4701100 4553530 3217610 2521820 7420300 TRUE FALSE FALSE 2870728.83 2080301.67 1912985.731 7147929.967 1700987.489 4121126.079 3414188.632 2485030.443 2740413.388 5562208.582 0.516113121 0.374006411 0.343925565 1.285088443 0.305811525 0.740915415 0.613818878 0.446770452 0.492684398 1 22.40722642 -11.33889314 2.167493945 3.320102524 0.572580569 0.187210282 0.269441165 17606184.65 1870911.498 200498084.2 0.066174197 4.58E-12 11.33889314 -2.747521956 RGS(ph)RSS(ph)PEPK ddPTM_HeLa_A486_30min_R1 1 RGSRSSPEPK 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGS(0.962)RS(0.061)S(0.977)PEPK 85.457 0.015293 851860000 1640600 490720 598060 792220 381010 2861000 1170900 990390 1805100 3371300 TRUE FALSE FALSE 1525602.412 451833.56 829644.8486 1844328.197 333220.173 2508038.909 877928.4355 764899.8171 1961567.521 2527104.537 0.603695807 0.178794962 0.328298587 0.729818719 0.131858484 0.992455544 0.347404875 0.302678344 0.776211468 1 21.26905391 -14 0.168561687 3.081897255 0.346545486 0.286392466 0.260023818 169.9668365 1.596669822 117.6179242 0.933965956 1.00E-14 14 -2.735351769 RGS(ph)S(ph)S(ph)DEEGGPK ddPTM_HeLa_A485_30min_R1 1 RGSSSDEEGGPK 12 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 3 0 RGS(1)S(1)S(1)DEEGGPK 102.29 0.00072233 290790000 479390 356550 241390 1073100 476800 474060 753330 791430 405220 1579600 TRUE FALSE FALSE 586028.6516 398245.4209 330690.2061 1131720.736 429328.1179 498881.0486 592374.8914 597330.5516 486543.9371 1185834.79 0.494190807 0.335835501 0.278867013 0.954366278 0.36204716 0.420700297 0.499542513 0.503721561 0.410296562 1 20.1774716 -10.40636785 2.89531434 1.009992385 0.474523038 0.446660023 0.175870167 20887427.67 24462022.48 1733828.105 0.044669202 3.92E-11 10.40636785 -0.535469347 RGS(ph)S(ph)SSSPEHSASSDSTK ddPTM_HeLa_A486_30min_R1 2 RGSSSSSPEHSASSDSTK 18 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 2 0 RGS(0.727)S(0.383)S(0.322)S(0.3)S(0.268)PEHSASSDSTK;RGS(0.372)S(0.414)S(0.417)S(0.398)S(0.37)PEHS(0.026)AS(0.001)S(0.001)DS(0.001)TK ; 80.83 0.0012405 635540000 427010 381680 258880 60628 420470 431830 540390 466890 372910 452090 TRUE FALSE FALSE 397078.8041 351434.2867 359125.269 141145.048 367730.7319 378555.2051 405178.7063 360589.3391 405234.1391 338883.7214 1.171725813 1.03703502 1.059730068 0.416499935 1.085123624 1.11706518 1.195627529 1.064050341 1.195791103 1 18.37043081 -5.97309016 24.99978313 1.121082065 0.915835176 0.184026259 0.194750848 374.5736781 347984.8043 0.062553044 0.07092693 1.06E-06 5.97309016 -0.205246889 RGS(ph)SFQSGR ddPTM_HeLa_A485_30min_R1 1 RGSSFQSGR 9 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 RGS(0.887)S(0.108)FQS(0.005)GR 107.34 0.0028609 151090000 161850 217530 217560 196630 256950 190140 247680 250620 235820 271390 TRUE FALSE FALSE 197852.9741 242968.2412 298044.4974 207371.399 231367.1558 200095.4364 194761.1446 189155.052 283146.9109 203737.4676 0.971117274 1.192555518 1.46288506 1.017836343 1.135614173 0.982123901 0.955941717 0.92842546 1.389763573 1 17.63635179 RGS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 3 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RGS(0.597)S(0.162)GS(0.227)VDET(0.014)LFALPAASEPVIR;RGS(0.734)S(0.132)GS(0.132)VDET(0.002)LFALPAASEPVIR;RGS(0.602)S(0.16)GS(0.232)VDET(0.006)LFALPAASEPVIR ;; 167.87 1.20E-14 871500000 528646 333663 333049 603615 427409 306689 433132 335800 308494 991660 TRUE FALSE FALSE 646241.4789 372681.9854 456257.6844 636588.959 384854.6592 322746.7618 340589.8098 253444.5235 370405.9161 744457.4121 0.868070447 0.500608872 0.612872781 0.855104602 0.51695994 0.433532874 0.45750073 0.340441937 0.497551519 1 19.50582979 -5.932060421 13.53114464 0.496418941 0.687336852 0.12404139 0.196116381 1.84378138 364.0158875 0.057903447 0.065662039 1.17E-06 5.932060421 0.190917912 RGS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_A486_30min_R1 4 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RGS(0.764)S(0.116)GS(0.116)VDET(0.004)LFALPAASEPVIR;RGS(0.295)S(0.295)GS(0.295)VDET(0.115)LFALPAASEPVIR;RGS(0.713)S(0.106)GS(0.157)VDET(0.024)LFALPAASEPVIR;RGS(0.691)S(0.123)GS(0.181)VDET(0.005)LFALPAASEPVIR ;;; 181.97 5.59E-21 1075221000 471767 509851 361662 165006 456869 530713 550380 442947 490813 492822 TRUE FALSE FALSE 438698.5695 469448.5499 501707.212 384142.3069 399564.2299 465239.026 412669.1027 342097.6376 533357.066 369416.1635 1.187545681 1.270785083 1.358108447 1.03986329 1.081610036 1.25939001 1.117084588 0.926049457 1.443783783 1 18.49488747 -5.261788683 24.99980173 1.124478233 1.27201027 0.188396629 0.140935002 52.29048949 3742583.751 0.037640462 0.060053374 5.47E-06 5.261788683 0.147532036 RGS(ph)SPDVHALLEITEESDAVLVDK ddPTM_HeLa_A485_30min_R1 2 RGSSPDVHALLEITEESDAVLVDK 24 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 RGS(0.441)S(0.441)PDVHALLEIT(0.059)EES(0.059)DAVLVDK;RGS(0.25)S(0.25)PDVHALLEIT(0.25)EES(0.25)DAVLVDK ; 53.201 0.028556 37203000 32016 23594 15684.8 34104 22260.1 20372.3 34249 25952 19022.6 52464 TRUE FALSE FALSE 39137.84875 26353.11306 21487.26022 35967.01516 20043.80628 21438.96213 26931.42136 19587.23131 22840.26133 39385.69033 0.993707319 0.669103749 0.545560076 0.91320007 0.508910879 0.544333791 0.683786958 0.497318471 0.579912683 1 15.26538394 -4.267325112 4.701587294 0.639692637 1.013047922 0.2676897 0.162957935 0.214426061 13.16064182 0.038611917 0.261613194 5.40E-05 4.267325112 0.373355285 RGS(ph)SPDVHALLEITEESDAVLVDK ddPTM_HeLa_A486_30min_R1 2 RGSSPDVHALLEITEESDAVLVDK 24 1 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 RGS(0.5)S(0.5)PDVHALLEITEESDAVLVDK;RGS(0.5)S(0.5)PDVHALLEITEESDAVLVDK ; 148.04 2.31E-09 83723000 90843 86434 41825 42628 63863 107045 123089 95173 69711 99349 TRUE FALSE FALSE 84475.37481 79584.65505 58020.76011 99240.1383 55852.70704 93838.87625 92290.8303 73504.18551 75753.60561 74471.36375 1.134333663 1.068661175 0.77910162 1.332594615 0.749989046 1.260066575 1.239279445 0.98701275 1.017217918 1 16.18439816 RGS(ph)SPDVHALLEITEESDAVLVDKSDSD ddPTM_HeLa_A485_30min_R1 3 RGSSPDVHALLEITEESDAVLVDKSDSD 28 2 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 RGS(0.491)S(0.491)PDVHALLEIT(0.018)EES(0.001)DAVLVDKSDSD;RGS(0.25)S(0.25)PDVHALLEIT(0.25)EES(0.25)DAVLVDKSDSD;RGS(0.453)S(0.453)PDVHALLEIT(0.047)EES(0.047)DAVLVDKSDSD ;; 139.67 3.54E-07 184567000 81022 72028 46197.1 96534 104532 78875 136195 154638 76520 160588 TRUE FALSE FALSE 99045.06438 80451.04804 63287.32971 101807.408 94124.42705 83004.77304 107095.8256 116712.788 91876.86212 120556.367 0.821566433 0.667331391 0.524960492 0.844479728 0.780750361 0.68851422 0.888346491 0.968117993 0.762107091 1 16.87934832 -6.911396104 0.53158592 0.965813645 0.680985742 0.403085819 0.105285526 0.890162751 0.535729479 0.103871707 0.079475457 1.23E-07 6.911396104 -0.284827903 RGS(ph)SPDVHALLEITEESDAVLVDKSDSD ddPTM_HeLa_A486_30min_R1 5 RGSSPDVHALLEITEESDAVLVDKSDSD 28 2 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 RGS(0.313)S(0.313)PDVHALLEIT(0.313)EES(0.06)DAVLVDKSDSD;RGS(0.492)S(0.492)PDVHALLEIT(0.013)EES(0.002)DAVLVDKSDSD;RGS(0.25)S(0.25)PDVHALLEIT(0.25)EES(0.25)DAVLVDKSDSD;RGS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;RGS(0.494)S(0.494)PDVHALLEIT(0.006)EES(0.006)DAVLVDKSDSD ;;;; 125.39 3.23E-06 193192000 100629.2 101460.7 64561.1 83816.1 107926 121258 187163 147599 79335.4 124333 TRUE FALSE FALSE 93575.61273 93420.58462 89560.88693 195128.1166 94388.91471 106298.4208 140332.8378 113993.9298 86212.25635 93199.20753 1.004038717 1.002375311 0.960961893 2.093667122 1.012765207 1.140550694 1.505729947 1.223121234 0.925032075 1 16.50803007 -10.08698675 13.23324349 1.000106033 1.221879353 0.031314468 0.338047704 0 0 0.330028583 0.080043689 8.18E-11 10.08698675 0.22177332 RGS(ph)SPGSLEIPK ddPTM_HeLa_A485_30min_R1 4 RGSSPGSLEIPK 12 1 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 RGS(0.5)S(0.5)PGSLEIPK;RGS(0.5)S(0.5)PGSLEIPK;RGS(0.5)S(0.5)PGSLEIPK;RGS(0.75)S(0.25)PGSLEIPK ;;; 137.61 5.98E-06 1686680000 2267490 2114250 1543370 3336330 2595190 2268430 3237830 3643600 1798880 3802790 TRUE FALSE FALSE 2771885.328 2361493.146 2114326.788 3518585.26 2336803.771 2387201.487 2546041.17 2750001.387 2159898.716 2854824.438 0.970947737 0.827193825 0.740615346 1.232504953 0.818545526 0.836199051 0.891838088 0.963282138 0.756578474 1 21.4449706 RGS(ph)SPGSLEIPK ddPTM_HeLa_A486_30min_R1 2 RGSSPGSLEIPK 12 1 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 RGS(0.5)S(0.5)PGSLEIPK;RGS(0.917)S(0.083)PGSLEIPK ; 154.81 3.99E-08 775410000 1049420 990090 513920 522770 1051690 1200150 1456160 1438000 699590 1365110 TRUE FALSE FALSE 975861.0772 911631.6626 712923.5873 1217034.979 919777.2336 1052087.695 1091813.366 1110598.791 760231.0245 1023277.571 0.953662139 0.890893819 0.696705965 1.189349805 0.898854094 1.02815475 1.06697674 1.085334833 0.74293725 1 19.96476611 -5.254590452 24.99971906 1.004755952 0.851467976 0.23745482 0.12677657 801.7182402 2926397.023 0.03369093 0.056746783 5.56E-06 5.254590452 -0.153287975 RGS(ph)SS(ph)DEEGGPK ddPTM_HeLa_A485_30min_R1 1 RGSSSDEEGGPK 12 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 2 0 RGS(0.561)S(0.446)S(0.993)DEEGGPK 68.972 0.0031618 0 186130 181790 87255 395920 159780 190770 266690 307940 180280 512660 TRUE FALSE FALSE 227533.9764 203048.7591 119534.2555 417548.1071 143871.7422 200758.4222 209709.5028 232417.2322 216460.5424 384863.2968 0.591207263 0.527586706 0.310588867 1.084925766 0.373825572 0.521635666 0.544893484 0.60389555 0.562434881 1 18.55398657 -9.661157093 1.090973325 1.014965695 0.567662586 0.306965672 0.194261785 101.4129459 60.23387371 6.588128193 0.056181041 2.18E-10 9.661157093 -0.447303109 RGS(ph)SS(ph)DEEGGPK ddPTM_HeLa_A486_30min_R1 1 RGSSSDEEGGPK 12 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 2 0 RGS(0.997)S(0.024)S(0.98)DEEGGPK 159.4 3.13E-07 0 713100 300360 258300 478900 276370 1187500 678920 545050 704660 1518600 TRUE FALSE FALSE 663115.3725 276558.3797 358320.6775 1114903.402 241705.0976 1040998.324 509047.0351 420954.0134 765740.4962 1138332.676 0.582532143 0.242950401 0.314776765 0.979417903 0.212332566 0.914493931 0.447186526 0.369798761 0.672686037 1 20.11849081 -14 0.211390387 3.300338685 0.453827806 0.254067838 0.249862997 209.0460363 2.08554317 204.1363742 0.515974017 1.00E-14 14 -2.846510878 RGS(ph)SSDEEGGPK ddPTM_HeLa_A485_30min_R1 5 RGSSSDEEGGPK 12 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 RGS(0.987)S(0.011)S(0.002)DEEGGPK;RGS(0.99)S(0.003)S(0.007)DEEGGPK;RGS(0.699)S(0.151)S(0.151)DEEGGPK;RGS(0.659)S(0.17)S(0.17)DEEGGPK;RGS(0.333)S(0.333)S(0.333)DEEGGPK ;;;; 167.29 1.17E-10 1804261000 2672664 1647728 636390 5879482 945813 2436490 2100485 2899727 1787001 5522512 TRUE FALSE FALSE 3267188.886 1840415.456 871817.1434 6200663.214 851644.5368 2564060.849 1651699.22 2188564.407 2145635.709 4145851.393 0.788062228 0.443917372 0.210286636 1.495630843 0.205420903 0.618464244 0.398398077 0.527892633 0.517538017 1 21.98323697 -10.29554396 4.736372568 1.000196252 0.574024811 0.11594656 0.349057372 0.000696429 0.000103582 0.325384442 0.078881346 5.06E-11 10.29554396 -0.426171441 RGS(ph)SSDEEGGPK ddPTM_HeLa_A486_30min_R1 2 RGSSSDEEGGPK 12 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 RGS(0.669)S(0.114)S(0.217)DEEGGPK;RGS(0.835)S(0.083)S(0.083)DEEGGPK ; 122.16 4.17E-05 649700000 842330 341140 534190 556790 361750 2066100 736540 704550 1195760 1633240 TRUE FALSE FALSE 783287.0168 314106.824 741042.6741 1296235.259 316375.9418 1811205.589 552249.9017 544139.3452 1299409.44 1224266.073 0.639801293 0.25656745 0.605295442 1.058785575 0.258420901 1.479421531 0.451086503 0.444461671 1.061378297 1 20.22348571 -5.002434191 24.70582616 0.79069751 0.443871052 0.152848909 0.354301028 157.3184857 1596787.515 0.089238264 0.18080136 9.94E-06 5.002434191 -0.346826457 RGS(ph)SSSSPEHSASSDSTK ddPTM_HeLa_A485_30min_R1 3 RGSSSSSPEHSASSDSTK 18 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 RGS(0.214)S(0.214)S(0.214)S(0.214)S(0.137)PEHS(0.004)AS(0.001)SDSTK;RGS(0.216)S(0.135)S(0.216)S(0.216)S(0.216)PEHS(0.002)ASSDSTK;RGS(0.287)S(0.287)S(0.16)S(0.16)S(0.103)PEHS(0.003)ASSDSTK ;; 127.58 6.21E-06 924904000 407385 434225 383796 386956 650860 443243 641740 608730 506568 675620 TRUE FALSE FALSE 498006.3878 485003.8365 525778.1115 408094.4265 586058.0931 466450.5181 504627.0065 459438.013 608231.5511 507200.3679 0.981873081 0.956237154 1.036628017 0.804601992 1.155476475 0.919657295 0.994926342 0.905831388 1.199193829 1 18.95219627 -7.751928458 24.99989134 1.099596944 0.971107419 0.224392206 0.096778372 246.3525194 647560.7018 0.062016394 0.022766755 1.77E-08 7.751928458 -0.128489524 RGS(ph)SSSSPEHSASSDSTK ddPTM_HeLa_A486_30min_R1 1 RGSSSSSPEHSASSDSTK 18 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 RGS(0.216)S(0.216)S(0.216)S(0.216)S(0.134)PEHS(0.002)ASSDSTK 167.73 2.08E-12 551400000 343910 311190 223180 15006 363990 331160 435760 354450 301270 241520 TRUE FALSE FALSE 319803.685 286530.1711 309601.273 34934.72636 318334.9801 290304.8462 326728.239 273749.4726 327384.3262 181041.82 1.766463047 1.582673943 1.710109151 0.192964953 1.75835053 1.603523684 1.804711415 1.51207866 1.808335368 1 17.46596347 RGS(ph)TSGAMEAPEPGEALELSLAGAHGHGVHK ddPTM_HeLa_A486_30min_R1 1 RGSTSGAMEAPEPGEALELSLAGAHGHGVHK 31 1 Q9C086;B8ZZ93;F8WCL7;J3KQ70;C9JKY0 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 RGS(0.333)T(0.333)S(0.333)GAMEAPEPGEALELSLAGAHGHGVHK 158.73 8.91E-11 137050000 94723 72444 37983 65381 82277 105870 141300 120900 68915 169250 TRUE FALSE FALSE 88083.40685 66703.2736 52691.03482 152210.2722 71957.05146 92808.83581 105945.2455 93373.70923 74888.60769 126868.6984 0.694287937 0.525766201 0.415319425 1.199746463 0.567177345 0.731534547 0.835077894 0.735986973 0.590284354 1 16.95297664 -14 0.086128958 1.806017499 0.475857538 0.154165073 0.20413894 461.2716248 2.776133321 72.23099848 5.64504824 1.00E-14 14 -1.330159961 RGS(ph)VSS(ph)VSPKPPSSFK ddPTM_HeLa_A485_30min_R1 1 RGSVSSVSPKPPSSFK 16 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 0 RGS(0.998)VS(0.004)S(0.58)VS(0.419)PKPPSSFK 88.036 0.00075204 152430000 211670 130640 69918 374840 204060 183490 309410 251840 102640 390620 TRUE FALSE FALSE 258755.2612 145917.2116 95783.57773 395316.5601 183743.0699 193097.2527 243302.0259 190075.8451 123238.9065 293245.6228 0.882384053 0.497593827 0.326632592 1.348073183 0.626584186 0.658482984 0.829686812 0.64817965 0.420258299 1 18.16175005 -3.936209385 18.11953378 0.702473101 3.458566442 0.033815313 0.281961679 410.8830374 130512.6571 0.067274326 5222.53186 0.000115822 3.936209385 2.756093341 RGS(ph)VSS(ph)VSPKPPSSFK ddPTM_HeLa_A486_30min_R1 1 RGSVSSVSPKPPSSFK 16 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 0 RGS(0.998)VS(0.006)S(0.666)VS(0.33)PKPPSSFK 75.224 0.0041158 134650000 197840 154480 60533 111550 129710 201900 282640 252840 117610 357080 TRUE FALSE FALSE 183972.4376 142238.4422 83972.99873 259694.0374 113440.5623 176991.6308 211920.4825 195273.8515 127804.5295 267664.8438 0.687323875 0.531405022 0.313724423 0.970220944 0.423815697 0.661243472 0.791738203 0.729546132 0.477479701 1 18.03006814 -14 0.200189864 2.678091276 0.56388725 0.271032322 0.183178292 188.4542618 1.864797854 126.8609096 0.431517383 1.00E-14 14 -2.114204026 RGS(ph)VSSVS(ph)PKPPSSFK ddPTM_HeLa_A486_30min_R1 1 RGSVSSVSPKPPSSFK 16 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 0 RGS(1)VSS(0.067)VS(0.933)PKPPSSFK 117.38 6.48E-05 152970000 136110 97593 39599 73360 97328 130050 176890 154690 57279 205980 TRUE FALSE FALSE 126569.3919 89859.37525 54932.7933 170785.7874 85120.21469 114005.7533 132630.251 119470.4639 62243.98984 154401.2673 0.819743219 0.581985995 0.35577942 1.106116487 0.551292202 0.73837317 0.858997166 0.773766083 0.40313134 1 17.23632507 -5.232877851 24.99510398 0.759060892 0.585451294 0.136724624 0.216018149 1595.250359 1396052.734 0.056982089 0.098672846 5.85E-06 5.232877851 -0.173609598 RGS(ph)VTDIPGTAMVRGGG ddPTM_HeLa_A485_30min_R1 1 RGSVTDIPGTAMVRGGG 17 2 Q86YJ6-2 Q86YJ6-2 1 0 RGS(0.994)VT(0.006)DIPGTAMVRGGG 51.591 0.031391 158420000 3771 8495.3 6658.6 2666.1 7824.6 7215.4 6875.2 7330.2 7141.2 4051.8 TRUE FALSE FALSE 4609.84594 9488.751436 9121.893227 2811.742292 7045.55535 7593.187187 5406.257355 5532.456957 8574.373337 3041.760828 1.515518872 3.119492943 2.998885759 0.924379809 2.316275259 2.496313029 1.777344657 1.818833653 2.818884792 1 11.570691 -10.7120589 2.7951176 0.812167558 2.200273866 0.22755845 0.662395694 105466525.7 109571410.8 141329747.6 0.163366469 1.94E-11 10.7120589 1.388106308 RGS(ph)YPFIDFR ddPTM_HeLa_A485_30min_R1 4 RGSYPFIDFR 10 1 A1E5M1;Q9NP56 A1E5M1 PDE7B "cAMP-specific 3,5-cyclic phosphodiesterase 7B" 1 0 RGS(1)YPFIDFR;RGS(0.992)Y(0.008)PFIDFR;RGS(1)YPFIDFR;RGS(1)YPFIDFR ;;; 127.71 5.75E-05 269250000 306413 360776 302029 382807 478751 368910 473654 519975 339972 512271 TRUE FALSE FALSE 374573.5147 402965.6149 413762.0956 403718.7771 431084.8694 388225.5572 372453.9535 392450.316 408201.262 384571.2673 0.974002861 1.04783079 1.07590486 1.049789236 1.120949239 1.009502243 0.96849137 1.020487876 1.061445034 1 18.55289145 -6.413029542 21.72384653 1.010525686 1.055471661 0.212654939 0.040004779 15.12522467 2969.695457 0.014540958 0.012823902 3.86E-07 6.413029542 0.044945975 RGS(ph)YPFIDFR ddPTM_HeLa_A486_30min_R1 2 RGSYPFIDFR 10 1 A1E5M1;Q9NP56 A1E5M1 PDE7B "cAMP-specific 3,5-cyclic phosphodiesterase 7B" 1 0 RGS(1)YPFIDFR;RGS(1)YPFIDFR ; 117.08 0.00024046 328650000 315820 372420 276810 150218 401160 337040 420580 425510 302250 417960 TRUE FALSE FALSE 293682.6489 342908.0829 383998.2452 349715.0956 350842.7721 295459.4316 315346.4356 328630.6618 328449.2734 313300.0955 0.937384486 1.094503601 1.22565633 1.116230415 1.119829764 0.94305567 1.006531565 1.04893253 1.048353569 1 18.25718568 -6.237192221 24.43281498 1.01225525 1.106511352 0.278391822 0.071298878 813.5907339 819820.1687 0.024855776 0.024844217 5.79E-07 6.237192221 0.094256102 RGSDASDFDLLETQS(ph)ACSDTSESSAAGGQGNSR ddPTM_HeLa_A485_30min_R1 1 RGSDASDFDLLETQSACSDTSESSAAGGQGNSR 33 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RGS(0.135)DAS(0.112)DFDLLET(0.327)QS(0.423)ACS(0.003)DTSESSAAGGQGNSR 70.264 0.00076813 479870000 72245 78556 67851 39026 75383 68602 68101 72111 81205 72546 TRUE FALSE FALSE 88315.65101 87742.44085 92951.90842 41157.89156 67877.60383 72193.89464 53550.66502 54425.66418 97502.09864 54461.61731 1.621612713 1.611087683 1.70674161 0.755722903 1.246338379 1.325592191 0.983273499 0.999339845 1.79029018 1 15.73295221 -5.230776759 24.9830973 1.160675579 1.642941488 0.423618785 0.261494616 662.2401532 539575.205 0.06941752 0.120217955 5.88E-06 5.230776759 0.482265909 RGSFDATGS(ph)GFSMTFSSSSYSSSGYGR ddPTM_HeLa_A486_30min_R1 1 RGSFDATGSGFSMTFSSSSYSSSGYGR 27 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RGS(0.196)FDAT(0.323)GS(0.458)GFS(0.024)MTFSSSSYSSSGYGR 166.56 5.08E-14 170080000 26131 25838 21735 19961 33993 23334 35166 32490 20408 42226 TRUE FALSE FALSE 24299.35184 23790.50278 30151.37408 46470.21677 29729.28097 20455.28832 26367.09485 25092.73625 22176.98187 31652.33475 0.767695402 0.751619208 0.95257978 1.468144993 0.939244489 0.646248957 0.833022115 0.79276099 0.700642845 1 14.9500243 -6.017783823 24.53644847 0.78496115 0.995731604 0.167733744 0.202877034 1075.518376 1483898.617 0.071406352 0.072898832 9.60E-07 6.017783823 0.210770454 RGSGDTSSLIDPDT(ph)SLSELRDIYDLK ddPTM_HeLa_A485_30min_R1 1 RGSGDTSSLIDPDTSLSELRDIYDLK 26 2 C9JSU1;Q9Y608-4;Q9Y608 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGSGDTSSLIDPDT(0.381)S(0.381)LS(0.181)ELRDIY(0.057)DLK 93.6 0.0030745 32743000 27184 22415 18708 35454 48621 29161 49725 47039 27865 50086 TRUE FALSE FALSE 33230.98702 25036.23927 25628.8677 37390.76225 43780.12252 30687.82487 39100.84753 35502.6115 33457.24991 37600.48196 0.883791518 0.665848892 0.681610085 0.994422419 1.164350036 0.816155093 1.039902828 0.944206288 0.88980907 1 15.19846353 -5.267180165 24.78218031 0.979631319 0.735960033 0.525689056 0.102058028 305.487263 1318747.301 0.028412604 0.043492863 5.41E-06 5.267180165 -0.243671286 RGSGDTSSLIDPDT(ph)SLSELRDIYDLK ddPTM_HeLa_A486_30min_R1 1 RGSGDTSSLIDPDTSLSELRDIYDLK 26 2 C9JSU1;Q9Y608-4;Q9Y608 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGSGDTSSLIDPDT(0.463)S(0.463)LS(0.073)ELRDIYDLK 126.05 8.78E-06 50166000 52547 58846 39551 33685 75301 71201 100780 97267 43611 72867 TRUE FALSE FALSE 48863.72665 54182.82865 54866.20641 78420.38235 65856.04643 62416.94454 75563.77806 75121.42742 47391.23659 54620.62892 0.894602051 0.991984708 1.004496058 1.435728294 1.20569916 1.142735735 1.383429293 1.375330693 0.867643554 1 15.73715831 -5.069410004 9.418095978 1.222580579 0.956819871 0.294669678 0.167908714 0.509489612 66.65659753 0.044487916 0.077343208 8.52E-06 5.069410004 -0.265760708 RGSLS(ph)NAGDPEIVK ddPTM_HeLa_A486_30min_R1 1 RGSLSNAGDPEIVK 14 1 O43847;O43847-2;F5H7V1 O43847 NRD1 Nardilysin 1 0 RGS(0.425)LS(0.575)NAGDPEIVK 78.078 0.003535 747510000 205990 200700 104150 93015 181060 226130 257930 261180 170570 281370 TRUE FALSE FALSE 191551.1647 184795.8011 144479.6692 216543.6207 158349.7665 198232.3797 193393.1859 201715.0155 185355.1449 210913.1206 0.908199377 0.876170247 0.685019826 1.026695827 0.750781962 0.939876946 0.916932931 0.956389128 0.878822258 1 17.68628932 RGSLT(ph)LTISGESPK ddPTM_HeLa_A485_30min_R1 1 RGSLTLTISGESPK 14 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(0.167)LT(0.803)LT(0.03)ISGESPK 131.45 1.56E-05 120860000 278770 231590 151170 355590 293690 291360 475260 423270 235070 508070 TRUE FALSE FALSE 340781.4248 258672.4359 207094.0737 375014.9813 264449.1924 306615.1591 373716.8185 319462.3688 282246.3928 381417.4993 0.893460382 0.678187121 0.542959025 0.983213885 0.693332615 0.803883303 0.979810363 0.837566104 0.739993297 1 18.54101151 -6.07701357 1.031380785 0.873985768 0.732003781 0.149397142 0.133531764 1.03742879 2.356330836 0.069417158 0.075637408 8.38E-07 6.07701357 -0.141981987 RGSMS(ph)YLAAVEEEVEESSVK ddPTM_HeLa_A486_30min_R1 1 RGSMSYLAAVEEEVEESSVK 20 1 A0A0C4DGK3;G3V5X4;A0A0A0MRE3;Q8WXH0-7;Q8WXH0;Q8WXH0-2 A0A0C4DGK3 SYNE2 Nesprin-2 1 0 RGS(0.209)MS(0.76)Y(0.03)LAAVEEEVEESSVK 150.94 7.61E-10 78814000 64327 47793 29290 20214 53581 52838 61279 49756 44281 63629 TRUE FALSE FALSE 59818.00948 44005.70862 40631.87241 47059.21356 46860.37136 46319.38478 45946.34606 38427.64497 48119.31273 47695.88424 1.254154534 0.922631152 0.85189473 0.986651454 0.982482495 0.971140079 0.963318886 0.805680523 1.008877674 1 15.54157716 -4.259646659 24.74004044 0.938724968 1.254154657 0.683728809 0.063279246 77.32806366 1067049.261 0.015639256 0.097467443 5.50E-05 4.259646659 0.315429689 RGSQNSSEHRPPAS(ph)STSEDVKASPSSANK ddPTM_HeLa_A486_30min_R1 1 RGSQNSSEHRPPASSTSEDVKASPSSANK 29 3 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 RGSQNSSEHRPPAS(0.235)S(0.235)T(0.235)S(0.235)EDVKAS(0.045)PS(0.011)S(0.003)ANK 48.388 0.037647 260640000 77784 60403 30477 2926 56616 62326 87953 83256 51376 41213 TRUE FALSE FALSE 72331.74328 55616.4463 42278.5106 6811.875872 49514.69336 54636.8518 65946.22913 64300.42627 55829.31305 30892.99655 2.341363783 1.800293028 1.368546769 0.220499033 1.602780529 1.768583754 2.134665992 2.081391689 1.807183481 1 14.9149922 -6.174703176 4.425127429 1.849890772 1.40006386 0.048985562 0.576418071 0.556516112 19.47322372 0.206883147 0.205856766 6.69E-07 6.174703176 -0.449826912 RGSQNSSEHRPPASSTSEDVKAS(ph)PSSANK ddPTM_HeLa_A485_30min_R1 2 RGSQNSSEHRPPASSTSEDVKASPSSANK 29 3 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 RGSQNSSEHRPPASSTSEDVKAS(0.979)PS(0.018)S(0.003)ANK;RGSQNSSEHRPPASSTSEDVKAS(0.999)PS(0.001)SANK ; 152.62 1.63E-09 324870000 161790 165071 110566 117094 237250 192933 328290 340520 167711 277720 TRUE FALSE FALSE 197779.6273 184374.6175 151468.9644 123490.5487 213628.557 203034.6735 258148.1596 257006.9361 201369.0594 208489.5151 0.948631049 0.884335203 0.726506388 0.592310595 1.024648923 0.973836375 1.238182935 1.232709165 0.965847416 1 17.66961531 -5.930896542 7.173794665 1.094957145 0.790545812 0.555122346 0.125371951 0.176001937 15.17620422 0.041906093 0.047566615 1.17E-06 5.930896542 -0.304411333 RGSS(ph)FQSGR ddPTM_HeLa_A485_30min_R1 3 RGSSFQSGR 9 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 RGS(0.229)S(0.771)FQSGR;RGS(0.276)S(0.724)FQSGR;RGS(0.215)S(0.785)FQSGR ;; 90.434 0.0020914 439380000 584863 536270 425710 1005882 378990 704860 538920 687710 520320 825459 TRUE FALSE FALSE 714963.7566 598982.1116 583197.8443 1060830.787 341256.4249 741765.3797 423775.3394 519048.0442 624743.4513 619687.2627 1.153749318 0.966587741 0.941116397 1.711880896 0.550691365 1.196999558 0.683853558 0.837596761 1.008159259 1 19.24118079 -5.799805564 24.99999402 0.877517972 1.159126049 0.256811313 0.258886193 247.981432 161587.1997 0.078164588 0.088631987 1.59E-06 5.799805564 0.281608076 RGSS(ph)FQSGR ddPTM_HeLa_A486_30min_R1 2 RGSSFQSGR 9 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 0 RGS(0.03)S(0.97)FQSGR;RGS(0.1)S(0.9)FQSGR ; 101.35 0.0010036 557090000 382720 201085 181812 133569 165938 559290 298670 270761 390720 617980 TRUE FALSE FALSE 355893.3044 185150.2923 252214.4755 310955.3822 145124.5087 490290.4862 223939.607 209114.631 424587.9242 463233.7856 0.768280111 0.399690821 0.544464768 0.671270948 0.313285674 1.058408306 0.483426758 0.451423531 0.916573742 1 18.82138095 -7.870979244 5.644868091 0.992393007 0.585439718 0.355903059 0.201121454 0.215690437 9.235608546 0.18596643 0.04846255 1.35E-08 7.870979244 -0.40695329 RGSS(ph)PGSLEIPK ddPTM_HeLa_A486_30min_R1 2 RGSSPGSLEIPK 12 1 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 RGS(0.225)S(0.775)PGSLEIPK;RGS(0.203)S(0.796)PGSLEIPK ; 136.72 2.64E-05 880910000 1181510 1096360 594360 563313 1082410 1322240 1609700 1521360 923720 1723820 TRUE FALSE FALSE 1098692.25 1009480.441 824512.1095 1311421.132 946644.0447 1159115.472 1206936.034 1174979.539 1003788.793 1292164.252 0.850272904 0.781232292 0.638086148 1.014902812 0.732603493 0.897034159 0.934042273 0.909311287 0.776827553 1 20.30135804 -5.259289355 24.99871354 0.886131495 0.759000641 0.302559261 0.095636346 252.6399671 2937474.42 0.025635818 0.041702158 5.50E-06 5.259289355 -0.127130854 RGSSAAASPGS(ph)PPPGR ddPTM_HeLa_A485_30min_R1 8 RGSSAAASPGSPPPGR 16 1 Q86UX6 Q86UX6 STK32C Serine/threonine-protein kinase 32C 1 0 RGS(0.001)S(0.001)AAAS(0.004)PGS(0.995)PPPGR;RGSSAAAS(0.009)PGS(0.991)PPPGR;RGSSAAASPGS(1)PPPGR;RGSSAAASPGS(1)PPPGR;RGSSAAASPGS(1)PPPGR;RGSSAAASPGS(1)PPPGR;RGSSAAASPGS(0.999)PPPGR;RGSSAAAS(0.001)PGS(0.999)PPPGR ;;;;;;; 148.91 3.42E-08 1864621000 276225.3 401362.3 391813.6 282080.7 463813.1 393218.2 451431.9 511177 334348.1 416367.2 TRUE FALSE FALSE 337670.665 448298.1296 536761.7554 297490.0544 417634.2392 413806.4969 354979.7867 385810.0393 401448.6968 312574.5197 1.080288519 1.434212008 1.717228122 0.951741219 1.336110952 1.323865097 1.135664503 1.234297791 1.284329565 1 18.25384065 -12.1887716 0.146113189 0.418133538 1.398185634 0.159315654 0.196621751 132.3368022 1.921983712 24.85867207 1.202945931 6.47E-13 12.1887716 0.980052095 RGSSAAASPGS(ph)PPPGR ddPTM_HeLa_A486_30min_R1 4 RGSSAAASPGSPPPGR 16 1 Q86UX6 Q86UX6 STK32C Serine/threonine-protein kinase 32C 1 0 RGSSAAAS(0.008)PGS(0.992)PPPGR;RGSSAAAS(0.001)PGS(0.999)PPPGR;RGSSAAAS(0.001)PGS(0.999)PPPGR;RGSSAAAS(0.001)PGS(0.999)PPPGR ;;; 131.3 8.46E-06 926040000 173740 193918 187253 82809.1 217221 171955 206572 217655 166561 209360 TRUE FALSE FALSE 161561.7232 178551.2314 259762.3764 192783.7697 189975.1167 150740.9404 154885.5007 168099.7079 180998.6416 156934.8933 1.02948248 1.137740803 1.655223838 1.228431521 1.21053459 0.960531704 0.986941129 1.071142971 1.153335869 1 17.25980663 -6.077564674 3.811958268 1.036586043 1.277532202 0.321678506 0.15853311 0.300536306 8.285856228 0.057009055 0.05854633 8.36E-07 6.077564674 0.240946159 RGSSGSVDET(ph)LFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 1 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RGS(0.304)S(0.194)GS(0.194)VDET(0.308)LFALPAASEPVIR 87.489 0.0021179 131100000 75678 58990 51902 111780 64542 51195 70284 55683 52010 154860 TRUE FALSE FALSE 92512.31001 65888.36736 71102.70962 117886.2584 58115.97186 53875.49104 55267.24923 42026.65694 62447.92994 116256.252 0.795762021 0.566751174 0.611603319 1.014020806 0.499895454 0.463420161 0.475391631 0.361500188 0.537157605 1 16.82694878 -4.256389512 23.58035024 0.594220391 0.795762208 0.055707876 0.209639508 724.059813 3380738.091 0.053180634 0.422811124 5.54E-05 4.256389512 0.201541817 RGSSS(ph)SSPEHSASSDSTK ddPTM_HeLa_A486_30min_R1 2 RGSSSSSPEHSASSDSTK 18 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 RGS(0.144)S(0.144)S(0.237)S(0.237)S(0.237)PEHSASSDSTK;RGS(0.092)S(0.171)S(0.322)S(0.322)S(0.092)PEHSASSDSTK ; 217.82 1.56E-34 181702000 324670 310940 230753 22792.7 374340 338840 428440 369200 325290 268571 TRUE FALSE FALSE 301912.3096 286299.982 320106.7414 53062.55748 327386.7866 297037.3659 321239.7804 285141.2196 353486.3991 201319.0735 1.499670669 1.422120503 1.590046764 0.263574417 1.62620849 1.475455657 1.59567484 1.416364653 1.75585151 1 17.61912434 RGSSSSS(ph)PEHSASSDSTK ddPTM_HeLa_A485_30min_R1 2 RGSSSSSPEHSASSDSTK 18 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 RGS(0.089)S(0.151)S(0.089)S(0.138)S(0.53)PEHS(0.002)ASSDSTK;RGS(0.165)S(0.165)S(0.073)S(0.073)S(0.52)PEHS(0.003)ASSDSTK ; 165.58 2.49E-12 622039000 354353 362910 310923 312494 555665 371618 547650 506736 379890 564888 TRUE FALSE FALSE 433177.6023 405349.1676 425946.3563 329564.7559 500341.0415 391075.3438 430640.1036 382458.2015 456130.4384 424071.8176 1.02147227 0.955850285 1.004420333 0.777143734 1.179849782 0.922191307 1.015488617 0.9018713 1.07559715 1 18.69394908 -5.758416521 24.99994427 1.006227265 0.945495093 0.127146005 0.09525119 211.1190777 1745999.83 0.027593998 0.034123909 1.74E-06 5.758416521 -0.060732172 RGSSSSS(ph)PEHSASSDSTK ddPTM_HeLa_A486_30min_R1 1 RGSSSSSPEHSASSDSTK 18 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 RGS(0.118)S(0.118)S(0.173)S(0.173)S(0.303)PEHS(0.11)AS(0.003)S(0.001)DSTK 134.68 3.04E-06 516560000 235350 212420 142560 10216 251980 215710 260810 245960 198250 153320 TRUE FALSE FALSE 218853.1803 195587.0656 197763.0499 23783.36429 220374.3188 189097.8934 195552.5794 189960.2773 215434.4696 114927.6741 1.904268769 1.701827407 1.720760918 0.206942014 1.917504383 1.645364312 1.701527339 1.652868022 1.874522141 1 16.81036671 RGSVSSVS(ph)PKPPSSFK ddPTM_HeLa_A485_30min_R1 2 RGSVSSVSPKPPSSFK 16 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 RGSVS(0.001)S(0.003)VS(0.995)PKPPSSFK;RGSVSS(0.002)VS(0.998)PKPPSSFK ; 127.37 8.91E-06 1151980000 869200 750430 435590 1159390 1010580 1042010 1678580 1739190 726130 1673050 TRUE FALSE FALSE 1062550.541 838186.2606 596732.8674 1222724.54 909963.1068 1096568.032 1319937.67 1312650.926 871857.6305 1255989.425 0.845986853 0.667351368 0.475109786 0.973514996 0.724499019 0.873071071 1.050914637 1.045113039 0.694160009 1 20.26039289 -5.895611573 1.214881271 0.944618017 0.686673627 0.298819004 0.151750762 0.556755567 1.733008851 0.065965068 0.08356307 1.27E-06 5.895611573 -0.257944389 RGSVSSVS(ph)PKPPSSFK ddPTM_HeLa_A486_30min_R1 1 RGSVSSVSPKPPSSFK 16 2 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 RGSVSSVS(0.999)PKPPSSFK 128.74 8.05E-06 622020000 812320 630850 276090 395520 659350 793790 1022800 1006800 493180 1235600 TRUE FALSE FALSE 755380.5628 580859.1485 382999.4419 920790.5485 576648.1748 695860.2605 766884.6219 777573.6183 535929.2395 926197.7176 0.815571609 0.627143792 0.413518015 0.994161971 0.622597275 0.751308546 0.827992347 0.839533075 0.578633729 1 19.82096068 -14 0.171947842 2.066294065 0.657813946 0.21147941 0.157436773 206.8462614 1.958405198 75.65183908 0.548230584 1.00E-14 14 -1.408480119 RGT(ph)FSDQELDAQS(ph)LDDEDDNMHHAVYPAVNR ddPTM_HeLa_A486_30min_R1 1 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNR 31 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 2 0 RGT(0.5)FS(0.5)DQELDAQS(1)LDDEDDNMHHAVYPAVNR 144.61 1.06E-09 250260000 63007 81716 83178 20877 82618 61403 55762 69449 52501 49778 TRUE FALSE FALSE 58590.53467 75240.52656 115386.7492 48602.71107 72255.28006 53827.72216 41809.75781 53636.97876 57051.82895 37313.2648 1.5702334 2.016455193 3.092378804 1.302558522 1.936450226 1.44258945 1.120506555 1.437477504 1.528995902 1 15.18740098 -5.903364142 1.379072511 1.315318653 2.141868286 0.37147975 0.450519344 0.459471891 1.819366775 0.184609069 0.226410693 1.25E-06 5.903364142 0.826549633 RGT(ph)FSDQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_HeLa_A486_30min_R1 1 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNR 31 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 RGT(0.5)FS(0.5)DQELDAQSLDDEDDNMHHAVYPAVNR 161.21 2.63E-14 319590000 43569 48904 36562 10830 53749 37923 42146 48446 38874 39080 TRUE FALSE FALSE 40515.03809 45028.66893 50719.78556 25212.78732 47007.29923 33244.44583 31600.62503 37415.90337 42243.62962 29294.11363 1.383043659 1.537123447 1.73139854 0.860677597 1.604667061 1.134850716 1.078736343 1.277249888 1.442051811 1 14.83832318 -5.240429481 24.97705222 1.220425139 1.549182022 0.353857052 0.215949968 939.6962167 1117131.138 0.056617109 0.097930873 5.75E-06 5.240429481 0.328756883 RGT(ph)GQS(ph)DDSDIWDDTALIK ddPTM_HeLa_A486_30min_R1 1 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 RGT(0.647)GQS(0.81)DDS(0.543)DIWDDTALIK 133.95 2.00E-06 696030000 128310 144190 84000 66402 138630 145200 175650 176890 108070 175600 TRUE FALSE FALSE 119316.1316 132763.8593 116527.0496 154587.2118 121241.7327 127286.7003 131700.5122 136616.0085 117437.5946 131628.617 0.906460421 1.008624585 0.885271396 1.174419478 0.921089467 0.967013885 1.000546197 1.037889872 0.892188927 1 17.00611365 RGT(ph)GQSDDSDIWDDTALIK ddPTM_HeLa_A485_30min_R1 1 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 RGT(0.5)GQS(0.5)DDSDIWDDTALIK 185.5 2.98E-18 1181100000 36372 34657 37125 45247 51570 46356 60440 68954 40958 69328 TRUE FALSE FALSE 44462.82592 38709.83467 50859.0824 47718.72904 46435.50973 48783.12848 47526.50025 52042.92338 49177.89491 52045.80549 0.854301812 0.743764734 0.977198487 0.916860227 0.892204651 0.937311432 0.913166773 0.999944624 0.944896413 1 15.66749428 -1.083403353 0.222591678 0.995338784 4.93E-12 0.483574271 0.052388482 40.25664885 0.534901827 0.079460708 14.34385103 0.082527112 1.083403353 -0.995338784 RGT(ph)GQSDDSDIWDDTALIK ddPTM_HeLa_A486_30min_R1 1 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 RGT(0.804)GQS(0.195)DDS(0.001)DIWDDTALIK 197.33 1.79E-25 146830000 139650 132030 79739 62847 143340 146510 180450 175260 105370 207920 TRUE FALSE FALSE 129861.2562 121567.462 110616.0763 146310.9921 125360.9606 128435.0858 135299.5014 135357.1239 114503.5564 155855.4787 0.833215857 0.78000121 0.709734924 0.938760661 0.804341058 0.824065262 0.868108728 0.868478446 0.734677776 1 17.24984934 -11.12848597 2.513832898 1.378878758 0.819930649 0.425450833 0.063435579 7214364.923 1894098.528 15657111.09 0.016156484 7.44E-12 11.12848597 -0.558948109 RGT(ph)PEKEKLPAK ddPTM_HeLa_A485_30min_R1 1 RGTPEKEKLPAK 12 3 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RGT(1)PEKEKLPAK 99.663 0.0014047 764790000 920220 670100 322050 1568500 1019600 1096700 2138900 2247400 691090 2305400 TRUE FALSE FALSE 1124919.764 748462.3659 441189.6966 1654183.183 918085.044 1154121.516 1681906.542 1696221.626 829785.4239 1730706.208 0.649977309 0.43246067 0.254918885 0.955785087 0.530468453 0.666850047 0.971803611 0.98007485 0.479449037 1 20.72292941 -5.791107088 0.908188635 0.84005445 0.468044545 0.283353052 0.217118674 0.778454666 1.390719467 0.109729077 0.171062296 1.62E-06 5.791107088 -0.372009905 RGT(ph)PEKEKLPAK ddPTM_HeLa_A486_30min_R1 2 RGTPEKEKLPAK 12 3 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RGT(1)PEKEKLPAK;RGT(1)PEKEKLPAK ; 89.866 0.0027574 2351000000 2535400 1924900 593750 1893510 1859090 2740800 4199400 3700100 1399800 5045000 TRUE FALSE FALSE 2357681.553 1772363.914 823665.9012 4408186.973 1625905.597 2402667.962 3148665.703 2857668.003 1521135.791 3781699.163 0.623445031 0.468668669 0.217803127 1.165663048 0.429940492 0.635340851 0.832606077 0.755657148 0.402236065 1 21.85060317 -14 0.105619999 2.082314547 0.407414098 0.162655393 0.252801084 329.8570357 2.336457478 79.92152711 3.594019378 1.00E-14 14 -1.674900448 RGT(ph)SLMEDDEEPIVEDVMMSSEGR ddPTM_HeLa_A485_30min_R1 2 RGTSLMEDDEEPIVEDVMMSSEGR 24 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR;RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR ; 196.06 1.04E-21 135580000 17176.4 20190.7 25843 20054.1 32376 20788.9 27170 29156 23865 29113 TRUE FALSE FALSE 20997.23092 22551.82673 35403.40112 21149.6047 29152.53176 21877.37466 21364.90754 22005.44529 28654.4866 21855.66489 0.960722588 1.031852696 1.619872985 0.967694409 1.333866158 1.000993325 0.977545531 1.006853161 1.311078238 1 14.41571965 -6.292342779 24.79927623 1.05461309 1.186747098 0.084308983 0.203016743 1647.957262 1322443.102 0.071394733 0.062972406 5.10E-07 6.292342779 0.132134009 RGT(ph)SLMEDDEEPIVEDVMMSSEGR ddPTM_HeLa_A486_30min_R1 2 RGTSLMEDDEEPIVEDVMMSSEGR 24 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR;RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR ; 89.396 0.0024836 110284000 20395 26610 18424.9 10238.6 27730 22281 32394 30942 24142.8 28679 TRUE FALSE FALSE 18965.41582 24501.32669 25559.51472 23835.97823 24251.84483 19532.19676 24288.67857 23897.18206 26235.51734 21497.59173 0.882211182 1.139724254 1.188947815 1.108774347 1.128119146 0.90857604 1.129832535 1.111621355 1.22039332 1 14.39188743 RGT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_HeLa_A485_30min_R1 2 RGTSPRPPEGGLGYSQLGDDDLK 23 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK;RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK ; 220.67 5.09E-38 1258660000 974360 842970 605150 1428260 876730 853020 1205080 951720 751720 1767790 TRUE FALSE FALSE 1191103.02 941548.0086 829020.1674 1506282.227 789439.6828 897682.8082 947604.8134 718309.1778 902583.3088 1327112.487 0.897514741 0.70947114 0.624679653 1.1350072 0.594855139 0.676418026 0.714035037 0.541257192 0.68011063 1 20.33985923 -4.257185275 23.14205938 0.728554819 0.897514928 0.061681186 0.175576815 437.2710137 2378450.816 0.042948438 0.317220683 5.53E-05 4.257185275 0.168960109 RGT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_HeLa_A486_30min_R1 3 RGTSPRPPEGGLGYSQLGDDDLK 23 2 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK;RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK;RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK ;; 211.62 2.49E-29 1634910000 1177830 1281560 614995 543756 884220 1334270 1454930 1299080 990730 1889370 TRUE FALSE FALSE 1095270.199 1180004.518 853137.5341 1265891.448 773312.8826 1169661.333 1090891.125 1003307.843 1076607.274 1416259.454 0.773354201 0.83318386 0.602387883 0.893827359 0.546024869 0.825880689 0.770262202 0.708420932 0.760176584 1 20.43365416 -8.059162047 19.68007615 1.000000001 0.743755942 0.3702835 0.099585623 1415.352408 470814.0975 0.088792022 0.02292598 8.73E-09 8.059162047 -0.256244059 RGTFS(ph)DQELDAQS(ph)LDDEDDNMHHAVYPAVNR ddPTM_HeLa_A486_30min_R1 2 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNR 31 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 2 0 RGT(0.129)FS(0.871)DQELDAQS(1)LDDEDDNMHHAVYPAVNR;RGT(0.432)FS(0.568)DQELDAQS(1)LDDEDDNMHHAVYPAVNR ; 165.49 2.91E-14 306065000 65483 88449 76697 29013 103839 88109 94988 93624 75117 77692 TRUE FALSE FALSE 60892.97985 81439.97911 106396.1324 67543.73024 90814.54436 77239.00741 71220.99772 72307.859 81628.20204 58237.41751 1.045598903 1.398413298 1.82693768 1.159799543 1.559384812 1.326278031 1.222942238 1.241604832 1.401645291 1 15.82965876 -6.536810133 5.901453356 1.240389954 1.41205608 0.12799652 0.218208498 0.369363991 46.32637491 0.082222617 0.065393543 2.91E-07 6.536810133 0.171666126 RGTFS(ph)DQELDAQSLDDEDDNMHHAVY(ph)PAVNRFSPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNRFSPSPR 37 2 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 3 0 RGT(0.461)FS(0.539)DQELDAQS(0.001)LDDEDDNMHHAVY(0.561)PAVNRFS(0.446)PS(0.992)PR 88.245 4.82E-05 127170000 26845 34652 29215 33274 44833 32663 45126 46423 35775 40552 TRUE FALSE FALSE 32816.57764 38704.24997 40022.84424 35091.67437 40369.2691 34373.18417 35484.46145 35037.68646 42954.71435 30443.1327 1.077963229 1.271362259 1.314675616 1.152695904 1.326055025 1.129094844 1.165598225 1.150922502 1.410982068 1 14.8938292 -6.304626013 24.99961951 1.180394627 1.231499675 0.05355484 0.116903151 1805.427449 1045109.525 0.039825813 0.035123504 4.96E-07 6.304626013 0.051105047 RGTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_HeLa_A485_30min_R1 1 RGTFSDQELDAQSLDDEDDNMHHAVYPAVNR 31 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 RGT(0.443)FS(0.55)DQELDAQS(0.007)LDDEDDNMHHAVYPAVNR 57.959 0.014596 275570000 84216 109930 87568 87587 131640 97479 125250 156780 99334 130410 TRUE FALSE FALSE 102949.5587 122785.3572 119963.0472 92371.65603 118533.4594 102582.8497 98489.3143 118329.4592 119269.4227 97901.18702 1.05156599 1.254176389 1.22534824 0.943519265 1.210745886 1.047820285 1.006007356 1.20866215 1.218263295 1 16.57903873 RGTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_HeLa_A485_30min_R1 4 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 RGT(0.207)GQS(0.794)DDS(0.999)DIWDDTALIK;RGT(0.076)GQS(0.924)DDS(1)DIWDDTALIK;RGT(0.153)GQS(0.947)DDS(0.9)DIWDDTALIK;RGT(0.002)GQS(0.998)DDS(1)DIWDDTALIK ;;; 227.24 2.45E-35 866280000 300669 306557 242569 427633 419137 335088 536585 505745 303811 571213 TRUE FALSE FALSE 367551.7818 342406.1745 332305.3672 450993.508 377406.2486 352632.6895 421939.2313 381710.2458 364783.081 428820.1115 0.857123469 0.798484412 0.774929529 1.051707921 0.880103891 0.822332442 0.983953924 0.890140727 0.850666914 1 18.71001304 -1 0.066034585 1.096552454 0.424306479 0.202169202 0.077862933 493.8982991 2.425351188 4.575017016 31.22838901 0.1 1 -0.672245976 RGTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_HeLa_A486_30min_R1 3 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 RGT(0.334)GQS(0.671)DDS(0.995)DIWDDTALIK;RGT(0.386)GQS(0.626)DDS(0.988)DIWDDTALIK;RGT(0.36)GQS(0.659)DDS(0.981)DIWDDTALIK ;; 178.53 2.46E-18 985421000 249955 249200 150200 131635 253822 264265 333726 341144 192085 358524 TRUE FALSE FALSE 232434.4453 229452.4844 208361.4625 306452.9325 221985.278 231662.6711 250224.225 263472.9583 208735.0825 268747.2568 0.864881183 0.853785401 0.775306379 1.140301621 0.826000163 0.862009436 0.931076387 0.980374503 0.776696607 1 18.0358905 -10.9863461 0.012263828 1.927634742 5.87E-06 0.064253231 0.104275665 15287.20902 26.10495402 2265.576974 1853.328277 1.03E-11 10.9863461 -1.927628875 RGTGQS(ph)DDSDIWDDTALIK ddPTM_HeLa_A485_30min_R1 3 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 RGT(0.055)GQS(0.945)DDSDIWDDTALIK;RGT(0.255)GQS(0.745)DDSDIWDDTALIK;RGT(0.042)GQS(0.82)DDS(0.139)DIWDDTALIK ;; 274.48 1.25E-69 3328180000 849270 897240 672660 1152140 1267950 1099200 1635440 1701600 868680 1574640 TRUE FALSE FALSE 1038187.182 1002164.413 921504.9257 1215078.491 1141708.446 1156752.412 1286014.884 1284279.932 1043016.108 1182111.227 0.878248305 0.847775057 0.779541641 1.027888462 0.965821506 0.978547861 1.087896684 1.086429012 0.882333307 1 20.17293436 -5.269151078 24.99302592 1.008560237 0.836447005 0.620447623 0.060480704 367.2080434 1190092.933 0.017308895 0.026221063 5.38E-06 5.269151078 -0.172113231 RGTGQS(ph)DDSDIWDDTALIK ddPTM_HeLa_A486_30min_R1 2 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 RGTGQS(0.995)DDS(0.005)DIWDDTALIK;RGT(0.147)GQS(0.852)DDSDIWDDTALIK ; 318.93 4.92E-90 2639500000 733660 728140 391878 347500 739620 811500 963290 993530 568420 1084110 TRUE FALSE FALSE 682234.2226 670439.5346 543623.6565 808997.5617 646849.9629 711385.3807 722264.6534 767324.9076 617691.1033 812641.7996 0.839526373 0.825012367 0.668958521 0.995515567 0.795984114 0.875398461 0.888785999 0.944235096 0.760102549 1 19.63226005 -14 0.091504926 1.466480504 0.729509334 0.22503205 0.087298206 309.130359 1.955909944 28.43798642 1.906592787 1.00E-14 14 -0.73697117 RGVGS(ph)PPGR ddPTM_HeLa_A485_30min_R1 2 RGVGSPPGR 9 1 O96028;O96028-5;O96028-3;O96028-6;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 RGVGS(1)PPGR;RGVGS(1)PPGR ; 47.991 0.03327 291602000 55254 84888 84542 57372 98348 87758 95185 113778 70810 88418 TRUE FALSE FALSE 67545.06168 94814.91317 115817.6039 60506.08709 88556.1278 92352.87318 74847.94716 85873.7671 85020.91749 66377.01981 1.017597082 1.428429801 1.744844891 0.911551728 1.334138352 1.391338048 1.127618374 1.293727367 1.2808788 1 16.01839624 -13.1734286 0.225429394 1.75E-06 1.32636999 0.126433424 0.219706824 218.6904651 3.073119785 99.65882857 0.407106025 6.71E-14 13.1734286 1.32636824 RGVGS(ph)PPGR ddPTM_HeLa_A486_30min_R1 2 RGVGSPPGR 9 1 O96028;O96028-5;O96028-3;O96028-6;H0Y9L4 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 RGVGS(1)PPGR;RGVGS(1)PPGR ; 54.524 0.025175 310809000 77665 90130 76584 34494.3 107363 79646 101021 101554 78139 90609 TRUE FALSE FALSE 72221.08456 82987.77055 106239.3758 80304.47365 93896.53142 69820.0863 75744.47731 78432.37111 84912.15143 67919.91663 1.06332705 1.221847356 1.564185898 1.18234058 1.382459462 1.02797662 1.115202743 1.154777199 1.250180443 1 16.05154707 -6.261704227 24.99999884 1.119649435 1.289491937 0.278608427 0.138679299 34.77780114 3282651.303 0.048046881 0.045070481 5.47E-07 6.261704227 0.169842502 RGVS(ph)GDRDENSFSLNSSISSSAR ddPTM_HeLa_A485_30min_R1 3 RGVSGDRDENSFSLNSSISSSAR 23 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 RGVS(1)GDRDENSFSLNSSISSSAR;RGVS(0.917)GDRDENS(0.064)FS(0.016)LNS(0.002)S(0.001)ISSSAR;RGVS(0.942)GDRDENS(0.058)FSLNSSISSSAR ;; 274.3 4.32E-75 1657000000 229110 356890 338376 309585 454140 367081 488794 566909 328280 399787 TRUE FALSE FALSE 280074.7291 398625.181 463555.3634 326496.8446 408924.227 386300.7935 384359.1688 427873.6789 394162.7848 300127.4584 0.933185956 1.328186308 1.544528334 1.087860625 1.362501882 1.287122463 1.280653129 1.425639897 1.313317971 1 18.19521579 -4.259600085 24.54539848 1.308679323 0.933185796 0.342606053 0.147613493 131.3837909 1753134.674 0.034349487 0.214514324 5.50E-05 4.259600085 -0.375493527 RGVS(ph)GDRDENSFSLNSSISSSAR ddPTM_HeLa_A486_30min_R1 3 RGVSGDRDENSFSLNSSISSSAR 23 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 RGVS(0.863)GDRDENS(0.137)FSLNSSISSSAR;RGVS(0.996)GDRDENS(0.001)FS(0.001)LNS(0.001)SISSSAR;RGVS(0.954)GDRDENS(0.046)FSLNSSISSSAR ;; 206.01 2.80E-29 1742740000 281728 298350 279144 156729 379030 265432 388521 376350 252903 363016 TRUE FALSE FALSE 261980.322 274707.6594 387236.0325 364873.0326 331488.5231 232685.6986 291308.9364 290663.3207 274824.8357 272114.4308 0.962757915 1.00952992 1.4230632 1.340880863 1.218195309 0.855102384 1.07053836 1.068165771 1.009960534 1 18.05385394 -6.228971483 24.10860366 1.009375302 1.20204203 0.315643156 0.139208815 582.6614911 432647.2204 0.050502924 0.050498441 5.90E-07 6.228971483 0.192666728 RGWDS(ph)SHEDDLPVYLAR ddPTM_HeLa_A486_30min_R1 1 RGWDSSHEDDLPVYLAR 17 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 RGWDS(0.5)S(0.5)HEDDLPVYLAR 63.578 0.014558 67766000 29378 36211 30764 13633 40875 29382 30841 33186 29732 26580 TRUE FALSE FALSE 27318.75391 33341.50848 42676.64469 31738.31297 35748.07636 25757.14757 23124.2556 25630.27225 32309.1937 19924.19499 1.371134639 1.673418098 2.141950764 1.592953341 1.794204301 1.292757252 1.160611789 1.28638935 1.621605978 1 14.28223382 -6.267702553 23.32555595 1.283193321 1.729405877 0.477203441 0.23116095 185.6634834 691451.6469 0.081311668 0.073608044 5.40E-07 6.267702553 0.446212556 RGWDS(ph)SHEDDLPVYLARPGTTDQVPR ddPTM_HeLa_A486_30min_R1 1 RGWDSSHEDDLPVYLARPGTTDQVPR 26 2 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 RGWDS(0.786)S(0.214)HEDDLPVYLARPGTTDQVPR 137.21 1.10E-06 912100000 219090 217390 203480 80593 269880 159730 199500 203760 133560 236490 TRUE FALSE FALSE 203732.9224 200163.2247 282272.9054 187624.5769 236029.1339 140024.1366 149582.9899 157368.296 145137.0883 177271.3647 1.149271473 1.129134562 1.592320936 1.058403185 1.33145663 0.789885816 0.843807967 0.887725416 0.81872833 1 17.43559999 -6.262182178 24.99992494 0.859498489 1.253423287 0.634144848 0.145794629 43.18921542 1453572.635 0.048792608 0.045593184 5.47E-07 6.262182178 0.393924798 RHAS(ph)APSHVQPSDSEK ddPTM_HeLa_A485_30min_R1 2 RHASAPSHVQPSDSEK 16 1 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 RHAS(0.999)APS(0.001)HVQPSDSEK;RHAS(0.996)APS(0.004)HVQPSDSEK ; 187.19 6.19E-18 977430000 718810 898490 714760 726870 1002550 931560 1346050 1361300 863660 1180100 TRUE FALSE FALSE 878706.8046 1003560.59 979179.4676 766577.0676 902732.6018 980335.0411 1058455.421 1027439.041 1036988.64 885922.7881 0.991854839 1.132785614 1.105265019 0.865286544 1.018974355 1.106569392 1.194749063 1.159738811 1.170518079 1 19.75682144 -6.395691399 4.049944393 1.145107849 1.025184271 0.274769728 0.08324446 0.308310689 8.613040603 0.031667908 0.027462707 4.02E-07 6.395691399 -0.119923578 RHAS(ph)APSHVQPSDSEK ddPTM_HeLa_A486_30min_R1 3 RHASAPSHVQPSDSEK 16 1 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 RHAS(0.611)APS(0.389)HVQPSDSEK;RHAS(0.998)APS(0.002)HVQPSDSEK;RHAS(0.995)APS(0.005)HVQPSDSEK ;; 185.61 7.18E-18 938720000 728740 633100 444416 109073 669270 634520 762300 737470 539062 720230 TRUE FALSE FALSE 677659.0892 582930.8503 616505.7771 253927.4562 585323.9159 556239.3737 571564.4772 569564.1799 585788.3282 539879.7201 1.255203824 1.079742077 1.141931719 0.470340794 1.084174667 1.030302404 1.058688548 1.054983469 1.085034882 1 19.0422785 -4.605926417 2.225226784 0.978970472 1.231291559 0.172815499 0.178940448 0.655434083 5.784508484 0.050166871 0.24551797 2.48E-05 4.605926417 0.252321086 RHDS(ph)LHDPAAPSR ddPTM_HeLa_A485_30min_R1 3 RHDSLHDPAAPSR 13 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 RHDS(1)LHDPAAPSR;RHDS(1)LHDPAAPSR;RHDS(1)LHDPAAPSR ;; 96.487 0.00090812 1267570000 405875 723660 923843 353295 598260 712420 633280 725540 809672 551880 TRUE FALSE FALSE 496160.4935 808285.742 1265610.97 372594.6113 538695.1338 749721.2096 497974.5546 547600.1774 972165.7436 414306.4726 1.197568772 1.950936795 3.054769968 0.899321241 1.300233449 1.809581214 1.20194732 1.321727305 2.346489394 1 18.66033883 -5.295110071 24.99994887 1.427974629 2.056077763 0.215988765 0.572372616 986.6363553 732559.5546 0.161771142 0.23996038 5.07E-06 5.295110071 0.628103133 RHDS(ph)LHDPAAPSR ddPTM_HeLa_A486_30min_R1 4 RHDSLHDPAAPSR 13 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 RHDS(1)LHDPAAPSR;RHDS(1)LHDPAAPSR;RHDS(1)LHDPAAPSR;RHDS(1)LHDPAAPSR ;;; 120.4 7.58E-05 1593210000 689400 729950 676990 148902 894800 687430 756510 815500 684690 703580 TRUE FALSE FALSE 641076.6201 672106.1036 939138.6584 346651.3811 782565.8403 602621.8759 567223.1965 629828.4522 744039.4805 527398.9885 1.215543894 1.274378826 1.780698634 0.65728488 1.483821277 1.142629943 1.075510588 1.194216269 1.410771535 1 19.00853528 -5.241771291 24.99999745 1.157869996 1.408624182 0.205955541 0.254517112 1481.500906 1883125.076 0.066599553 0.115140154 5.73E-06 5.241771291 0.250754186 RHEHPPNPPVS(ph)PGK ddPTM_HeLa_A485_30min_R1 4 RHEHPPNPPVSPGK 14 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK ;;; 136.49 7.42E-06 1429990000 989660 787390 624673 1474940 956330 816130 1209020 1028330 770830 1849760 TRUE FALSE FALSE 1209806.453 879468.4111 855765.5375 1555512.237 861114.4273 858861.3048 950703.0002 776130.4551 925528.5105 1388648.874 0.8712112 0.633326702 0.616257683 1.120162387 0.620109549 0.618487021 0.68462447 0.558910513 0.666495705 1 20.40525042 -4.24077679 22.59528701 0.711677311 0.871211789 0.055169063 0.175617134 3905.947866 4271042.456 0.043403017 1.497381228 5.74E-05 4.24077679 0.159534478 RHEHPPNPPVS(ph)PGK ddPTM_HeLa_A486_30min_R1 4 RHEHPPNPPVSPGK 14 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK;RHEHPPNPPVS(1)PGK ;;; 124.26 2.56E-05 1566200000 1010250 880680 467619 464843 704808 1036070 1107950 1069130 709136 1480150 TRUE FALSE FALSE 939436.6919 810891.7094 648693.6001 1082177.996 616404.4086 908250.2174 830729.1913 825712.4379 770604.4794 1109510.806 0.846712521 0.730855171 0.58466632 0.97536499 0.555564133 0.818604211 0.748734656 0.744213065 0.694544366 1 20.08149229 -10.77687182 2.785737555 1.061463947 0.742817083 0.306225476 0.115413223 731616752.1 557906460.5 306086338.1 0.027135883 1.67E-11 10.77687182 -0.318646863 RHEHPPNPPVS(ph)PGKTVNDVNSNNNMSYR ddPTM_HeLa_A485_30min_R1 2 RHEHPPNPPVSPGKTVNDVNSNNNMSYR 28 2 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 RHEHPPNPPVS(0.956)PGKT(0.044)VNDVNSNNNMSYR;RHEHPPNPPVS(0.953)PGKT(0.047)VNDVNSNNNMSYR ; 183.55 1.02E-20 582020000 228850 313180 241350 254160 393240 388200 567990 762150 258950 396090 TRUE FALSE FALSE 279756.893 349803.6767 330635.4084 268044.1172 354087.6449 408525.5517 446634.2964 575231.5175 310918.8898 297352.0525 0.94082718 1.176395703 1.111932491 0.901436916 1.19080276 1.373878365 1.50203872 1.934513358 1.045625504 1 18.18181251 -6.183506992 2.795146259 1.444540818 1.048634091 0.256452119 0.256720145 0.322404339 4.933797177 0.090462437 0.088349908 6.55E-07 6.183506992 -0.395906727 RHEHPPNPPVS(ph)PGKTVNDVNSNNNMSYR ddPTM_HeLa_A486_30min_R1 2 RHEHPPNPPVSPGKTVNDVNSNNNMSYR 28 2 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 RHEHPPNPPVS(0.998)PGKT(0.002)VNDVNSNNNMSYR;RHEHPPNPPVS(0.838)PGKT(0.162)VNDVNSNNNMSYR ; 143.22 2.02E-09 504210000 328510 211610 191806 137743 358320 293330 447450 419200 197799 424890 TRUE FALSE FALSE 305483.1454 194841.2529 266078.4199 320672.6651 313376.1644 257141.927 335493.2774 323757.3111 214944.3766 318494.7784 0.959146479 0.611756506 0.835424748 1.006838061 0.983928735 0.807366225 1.053371358 1.016523136 0.674875669 1 18.28091019 -5.007525778 24.71762732 0.935852388 0.769986281 0.176931656 0.133123807 443.4873082 1456607.327 0.033913858 0.066167421 9.83E-06 5.007525778 -0.165866107 RHGAPAAPS(ph)PPPR ddPTM_HeLa_A485_30min_R1 6 RHGAPAAPSPPPR 13 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR ;;;;; 113.81 0.00014024 3680321000 518960 696517 602331 545110 695556 603422 703331 707825 581289 757715 TRUE FALSE FALSE 634400.8616 777968.6043 825158.302 574887.979 626304.0024 635016.2429 553058.5862 534229.8089 697948.3704 568830.5952 1.115272046 1.367663081 1.450622222 1.010648836 1.101037827 1.116353881 0.972272924 0.939172072 1.226988099 1 19.11763954 -5.274185953 24.98418067 1.051177392 1.316833515 0.535820008 0.110356853 550.1199488 1078272.41 0.031098097 0.046472702 5.32E-06 5.274185953 0.265656123 RHGAPAAPS(ph)PPPR ddPTM_HeLa_A486_30min_R1 3 RHGAPAAPSPPPR 13 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR ;; 115.87 0.00011318 2640580000 323760 365853 270156 84248 401276 317992 319365 331024 289960 281901 TRUE FALSE FALSE 301066.0959 336861.4759 374767.6382 196133.6017 350944.2223 278761.3801 239456.4991 255657.0614 315093.9663 211311.1547 1.4247525 1.594149047 1.773534571 0.928174388 1.660793642 1.319198603 1.133193841 1.209860699 1.491137402 1 17.6890094 -1.00000054 0.058372381 0.483931454 3.14978974 0.257119839 0.232714199 488.2054297 2.137673504 20.28370126 111.5712121 0.099999876 1.00000054 2.665858286 RHNS(ph)SDGFDSAIGRPNGGNFGR ddPTM_HeLa_A485_30min_R1 3 RHNSSDGFDSAIGRPNGGNFGR 22 2 D4PHA4;Q86WP2-3;Q86WP2;Q86WP2-2 D4PHA4 GPBP1 Vasculin 1 0 RHNS(0.961)S(0.039)DGFDSAIGRPNGGNFGR;RHNS(0.886)S(0.114)DGFDSAIGRPNGGNFGR;RHNS(0.959)S(0.041)DGFDSAIGRPNGGNFGR ;; 215.37 1.83E-29 2106860000 232176 288773 291655 262741 383014 297150 404686 468752 308251 318483 TRUE FALSE FALSE 283822.7502 322542.4904 399550.3213 277093.8755 344879.7813 312708.3145 318221.5301 353789.837 370114.1483 239091.0493 1.187090654 1.349036241 1.671122036 1.158947089 1.442462118 1.307904731 1.330963794 1.479728488 1.548005035 1 17.8672006 -4.291780385 5.014898978 1.383992464 1.181345206 0.073693848 0.181420519 0.361201279 24.60396199 0.042651085 0.225784974 5.11E-05 4.291780385 -0.202647258 RHNS(ph)SDGFDSAIGRPNGGNFGR ddPTM_HeLa_A486_30min_R1 3 RHNSSDGFDSAIGRPNGGNFGR 22 2 D4PHA4;Q86WP2-3;Q86WP2;Q86WP2-2 D4PHA4 GPBP1 Vasculin 1 0 RHNS(0.92)S(0.08)DGFDSAIGRPNGGNFGR;RHNS(0.938)S(0.062)DGFDSAIGRPNGGNFGR;RHNS(0.796)S(0.204)DGFDSAIGRPNGGNFGR ;; 240.4 4.64E-47 2419690000 196069 167021 174487 49016 210684 190410 184974 172366 144262 176439 TRUE FALSE FALSE 182325.5756 153785.6477 242053.0393 114111.7251 184258.0482 166919.1501 138691.5487 133122.0245 156766.7463 132257.526 1.378564844 1.162774266 1.830164579 0.862799484 1.393176281 1.262076762 1.048647687 1.006536479 1.185314372 1 17.01299029 -6.281942106 0.663961403 1.035427451 1.387027508 0.228853985 0.229684828 1.171125319 1.127468504 0.17329559 0.178224011 5.22E-07 6.281942106 0.351600057 RHNS(ph)SDGFFNNGPLR ddPTM_HeLa_A486_30min_R1 2 RHNSSDGFFNNGPLR 15 1 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 RHNS(0.848)S(0.152)DGFFNNGPLR;RHNS(0.961)S(0.039)DGFFNNGPLR ; 125.51 1.57E-05 396470000 190842 193754 174655 59681 213830 164587 191732 198675 148469 177100 TRUE FALSE FALSE 177464.9613 178400.2274 242286.0934 138940.3841 187009.4475 144281.9293 143758.6257 153441.0395 161338.4125 132753.0073 1.336805583 1.343850743 1.825089302 1.046608186 1.408702156 1.086844903 1.082902969 1.155838521 1.215327741 1 17.01838502 -5.29132143 24.99977886 1.155123403 1.486108937 0.498681047 0.164645233 585.505829 489841.9102 0.045795308 0.067935113 5.11E-06 5.29132143 0.330985534 RHNS(ph)WSSSSR ddPTM_HeLa_A485_30min_R1 8 RHNSWSSSSR 10 1 H3BQ37;H3BPW9;Q96F86 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(0.999)WS(0.001)SSSR;RHNS(1)WSSSSR ;;;;;;; 179.5 9.90E-10 9519510000 547796.8 867817.3 859023 375314.5 942325 644069.5 804917 839762 755642.7 687245.5 TRUE FALSE FALSE 669652.3083 969300.9842 1176811.355 395816.9808 848503.8143 677791.9831 632939.9074 633809.0528 907293.2587 515927.8447 1.297957292 1.878752997 2.28096112 0.767194453 1.644617214 1.313734062 1.226799278 1.228483904 1.75856618 1 18.97680979 -5.256203857 24.99975663 1.301325824 1.825176682 0.337650557 0.346784642 516.524164 2466408.405 0.092589056 0.154450547 5.54E-06 5.256203857 0.523850858 RHNS(ph)WSSSSR ddPTM_HeLa_A486_30min_R1 7 RHNSWSSSSR 10 1 H3BQ37;H3BPW9;Q96F86 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 RHNS(1)WSSSSR;RHNS(0.999)WS(0.001)SSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR;RHNS(1)WSSSSR ;;;;;; 174.95 6.97E-08 6680309000 534542.4 559858.7 558629.9 50008.9 654751.7 439085.5 502246.7 491538.4 501401.4 349642.3 TRUE FALSE FALSE 497073.7381 515493.4576 774946.3579 116423.2465 572626.6365 384915.5953 376579.2634 379625.8365 544863.2771 262089.5923 1.896579463 1.966859703 2.956799433 0.444211636 2.184850728 1.468641284 1.4368341 1.448458267 2.078919931 1 17.99970054 -5.245123303 24.99946457 1.488522099 2.242757418 0.334873769 0.536019501 1024.612487 1569907.234 0.139072952 0.239971214 5.69E-06 5.245123303 0.754235318 RHNSAS(ph)VENVSLR ddPTM_HeLa_A485_30min_R1 1 RHNSASVENVSLR 13 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RHNS(0.021)AS(0.979)VENVSLR 96.143 0.0006593 254150000 29538 66147 81434 24517 78568 50075 51795 51577 52466 25007 TRUE FALSE FALSE 36108.6262 73882.31625 111559.8254 25856.30163 70745.49405 52696.84957 40728.57512 38927.65988 62995.44495 18773.21512 1.923411944 3.935517479 5.942499707 1.377297467 3.768427177 2.807023157 2.169504524 2.073574485 3.35560236 1 14.19638813 -8.186048483 0.246831098 0.534769293 3.882411232 0.220027886 1.228721841 4.978580256 0.896800812 5.701820797 2.958559302 6.52E-09 8.186048483 3.347641938 RHNSAS(ph)VENVSLR ddPTM_HeLa_A486_30min_R1 2 RHNSASVENVSLR 13 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RHNS(0.151)AS(0.849)VENVSLR;RHNS(0.03)AS(0.97)VENVSLR ; 147.6 4.56E-08 525350000 151244 156397 194088 16844.8 228010 99137 125318 122821 141696 64230 TRUE FALSE FALSE 140642.5766 144003.5321 269244.0715 39215.54569 199410.8597 86906.48489 93962.11092 94857.33946 153978.3234 48146.38993 2.921144801 2.99095181 5.592196462 0.814506461 4.141761407 1.805046755 1.951592031 1.970185918 3.198128117 1 15.55514001 -5.859828539 1.054423667 2.064385822 3.526577944 0.187924486 1.246270433 0.901910545 2.15042172 0.560007917 0.764622759 1.38E-06 5.859828539 1.462192122 RHNSAS(ph)VENVSLRK ddPTM_HeLa_A485_30min_R1 1 RHNSASVENVSLRK 14 2 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RHNSAS(1)VENVSLRK 88.283 0.00068112 469710000 95639 236960 172380 48090 238870 175540 202330 246050 152450 99080 TRUE FALSE FALSE 116913.5656 264670.4107 236150.5353 50717.03493 215087.2641 184731.003 159100.5426 185705.8517 183045.3166 74381.17943 1.571816506 3.558298117 3.174869465 0.681853062 2.891689346 2.483571844 2.138989242 2.496677965 2.460909037 1 16.18265 -10.51416456 2.782217743 0.937469486 2.405940386 0.225413484 0.768889882 32920527.29 34827179.34 15629197.57 0.193274333 3.06E-11 10.51416456 1.468470901 RHPKGEEGS(ph)DDDETENGPKPK ddPTM_HeLa_A485_30min_R1 5 RHPKGEEGSDDDETENGPKPK 21 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 RHPKGEEGS(1)DDDETENGPKPK;RHPKGEEGS(1)DDDETENGPKPK;RHPKGEEGS(0.993)DDDET(0.007)ENGPKPK;RHPKGEEGS(1)DDDETENGPKPK;RHPKGEEGS(1)DDDETENGPKPK ;;;; 220.13 1.53E-35 7235030000 1146014 791820 321603 1898995 1241531 1349923 2916070 3247710 705899 2685970 TRUE FALSE FALSE 1400940.861 884416.4611 440577.3327 2002732.288 1117919.814 1420602.881 2293027.822 2451204.03 847566.4544 2016407.111 0.694770839 0.438610069 0.218496221 0.993218224 0.55441176 0.704521856 1.137184952 1.215629531 0.420334986 1 20.94335552 -5.944257879 1.033521971 0.93932863 0.488675038 0.266753175 0.273262748 0.674958905 1.549434312 0.134208953 0.168052351 1.14E-06 5.944257879 -0.450653592 RHPKGEEGS(ph)DDDETENGPKPK ddPTM_HeLa_A486_30min_R1 5 RHPKGEEGSDDDETENGPKPK 21 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 RHPKGEEGS(1)DDDETENGPKPK;RHPKGEEGS(0.998)DDDET(0.002)ENGPKPK;RHPKGEEGS(0.998)DDDET(0.002)ENGPKPK;RHPKGEEGS(1)DDDETENGPKPK;RHPKGEEGS(1)DDDETENGPKPK ;;;; 211.66 4.72E-27 2290207000 2184110 1286219 396861.2 1774534 1238637 2000754 3536544 3139404 933802 4716329 TRUE FALSE FALSE 2031015.168 1184294.322 550536.485 4131204.832 1083275.598 1753921.314 2651663.285 2424630.242 1014744.709 3535329.52 0.57449105 0.334988384 0.155724235 1.168548733 0.306414322 0.496112542 0.750046996 0.685828641 0.287029739 1 21.75341326 -14 0.235531763 3.509525658 0.487578795 0.193326514 0.279803284 284.9303902 2.84926693 343.1094816 0.459802457 1.00E-14 14 -3.021946863 RHPPLYQAGLTPPLS(ph)PPK ddPTM_HeLa_A485_30min_R1 1 RHPPLYQAGLTPPLSPPK 18 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 RHPPLYQAGLT(0.001)PPLS(0.999)PPK 67.251 0.0047027 451300000 195700 178080 165740 170070 186920 217460 242220 264390 137020 225800 TRUE FALSE FALSE 239232.7898 198904.9069 227054.123 179360.4935 168309.5885 228845.8693 190467.7182 199547.938 164518.6572 169512.2155 1.41130118 1.173395712 1.339455816 1.058097748 0.992905366 1.350025829 1.123622375 1.177189132 0.970541602 1 17.37102972 -1 0.359973258 1.084469537 4.706243838 0.385276785 0.119695051 75.84706925 1.060230544 0.098918537 188.1912148 0.1 1 3.621774301 RHPPLYQAGLTPPLS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 RHPPLYQAGLTPPLSPPK 18 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 RHPPLYQAGLT(0.002)PPLS(0.998)PPK 61.89 0.015984 254680000 194160 168430 93867 107100 155570 170570 217290 237910 145590 290260 TRUE FALSE FALSE 180550.3866 155082.9934 130214.8162 249334.2125 136056.96 149526.8076 162921.7437 183743.0865 158209.8584 217577.0067 0.829822918 0.712772897 0.598476917 1.145958464 0.625327841 0.687236257 0.748800373 0.844496803 0.7271442 1 17.73116658 -10.55340353 2.854228691 1.012259592 0.76832881 0.1839567 0.146022664 59266710.92 62900368.55 5588688.121 0.035932857 2.80E-11 10.55340353 -0.243930782 RHPTGTT(ph)PPVK ddPTM_HeLa_A485_30min_R1 1 RHPTGTTPPVK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 RHPT(0.29)GT(0.29)T(0.42)PPVK 61.212 0.023832 1415900000 583290 745790 624550 609690 834810 792170 946660 1103000 689390 868280 TRUE FALSE FALSE 713040.8482 833003.653 855597.0347 642995.8209 751693.3852 833646.7963 744398.3575 832487.5206 827744.2495 651833.7755 1.093899818 1.277938769 1.312600032 0.986441398 1.153197968 1.278925437 1.142006422 1.277146953 1.269870143 1 19.31414458 RHPTGTT(ph)PPVK ddPTM_HeLa_A486_30min_R1 1 RHPTGTTPPVK 11 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 RHPT(0.304)GT(0.304)T(0.392)PPVK 59.306 0.027104 531480000 769510 710990 564170 183930 752850 629820 772560 802300 629850 797970 TRUE FALSE FALSE 715571.3228 654648.563 782631.733 428198.3353 658420.533 552119.2119 579257.3167 619633.8041 684445.9051 598153.1181 1.19630125 1.094449804 1.308413698 0.71586743 1.100755832 0.923039929 0.968409759 1.035911684 1.14426538 1 19.19015531 -5.227391205 24.99993967 0.987202664 1.189194384 0.407544294 0.118925435 652.9421825 479423.3182 0.031136385 0.053926641 5.92E-06 5.227391205 0.201991721 RHQDGLPYIDDS(ph)PSS(ph)SPHLSSK ddPTM_HeLa_A486_30min_R1 1 RHQDGLPYIDDSPSSSPHLSSK 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 2 0 RHQDGLPYIDDS(0.994)PS(0.026)S(0.633)S(0.346)PHLSSK 95.255 0.0015164 107970000 348110 293750 235650 38560 329550 208940 255380 241540 252220 114460 TRUE FALSE FALSE 323709.2866 270472.1802 326899.9909 89769.62871 288214.7661 183163.1071 191481.2229 186546.6148 274082.6327 85798.47099 3.772902744 3.15241259 3.810091102 1.046284714 3.359206321 2.134806192 2.231755655 2.174241716 3.194493206 1 16.38866432 -1 0.082515021 0.232582539 9.016435797 0.373272957 0.774889079 208.2157974 1.251054847 19.38190875 208.0291728 0.1 1 8.783853258 RHQDGLPYIDDS(ph)PSSSPHLSSK ddPTM_HeLa_A485_30min_R1 2 RHQDGLPYIDDSPSSSPHLSSK 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 RHQDGLPYIDDS(0.752)PS(0.242)S(0.006)SPHLSSK;RHQDGLPYIDDS(0.824)PS(0.164)S(0.005)S(0.007)PHLSSK ; 189.66 7.58E-20 538870000 264577 675040 558610 124464 795800 444250 531740 650170 467750 251971 TRUE FALSE FALSE 323431.2409 753980.0559 765263.0847 131263.1532 716567.3578 467510.2431 418129.4051 490714.7881 561623.1345 189159.2669 1.709835559 3.985953574 4.045601875 0.693929276 3.788169459 2.471516467 2.210462178 2.594188464 2.969049012 1 17.52924193 -10.34379354 0.342704556 3.13E-19 2.870744455 0.202798305 1.005574895 33.14407559 2.492746209 32.56789922 0.842794738 4.53E-11 10.34379354 2.870744455 RHQDGLPYIDDS(ph)PSSSPHLSSK ddPTM_HeLa_A486_30min_R1 1 RHQDGLPYIDDSPSSSPHLSSK 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 RHQDGLPYIDDS(0.874)PS(0.042)S(0.042)S(0.042)PHLSSK 95.823 0.00087233 232480000 110980 104570 117440 12671 147860 69665 85562 77731 101020 39040 TRUE FALSE FALSE 103200.8751 96283.49236 162915.9132 29498.72836 129314.0201 61070.4406 64153.48262 60033.34816 109776.4949 29264.12989 3.526531473 3.290153943 5.567085499 1.008016588 4.418857507 2.0868702 2.192222453 2.051431168 3.751230443 1 14.83684576 -5.73791939 0.910446483 2.293296925 3.889909283 0.20296382 1.254976096 1.020946533 1.818792083 0.594661677 0.988841952 1.83E-06 5.73791939 1.596612359 RHS(ph)AQLSSDHIIPLMHLAK ddPTM_HeLa_A485_30min_R1 1 RHSAQLSSDHIIPLMHLAK 19 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 RHS(0.882)AQLS(0.059)S(0.059)DHIIPLMHLAK 167.99 9.70E-13 394330000 192140 280220 238940 115010 305740 198890 245000 274920 181330 182660 TRUE FALSE FALSE 234880.8801 312989.2914 327333.8491 121292.7051 275299.4521 209303.5729 192653.7485 207495.4389 217721.2677 137126.2236 1.712880833 2.282490418 2.387098839 0.884533256 2.007635337 1.526357011 1.404937316 1.513171102 1.587743482 1 17.06514497 -1 0.09227983 0.616722081 4.791202407 0.331808058 0.381475076 171.7167494 1.138186091 6.523381385 90.7037048 0.1 1 4.174480326 RHS(ph)AQLSSDHIIPLMHLAK ddPTM_HeLa_A486_30min_R1 1 RHSAQLSSDHIIPLMHLAK 19 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 RHS(0.733)AQLS(0.134)S(0.134)DHIIPLMHLAK 100.23 0.00014263 457330000 252220 212820 215800 31761 310540 186290 202230 193700 218690 124170 TRUE FALSE FALSE 234540.6805 195955.3681 299363.5393 73941.21311 271589.1775 163307.4339 151629.915 149598.7384 237646.2253 93077.02379 2.519855824 2.10530333 3.216299008 0.794408868 2.917897097 1.754540779 1.629079969 1.607257434 2.553221145 1 16.50613746 -8.085868929 0.094099239 1.01E-11 3.428356064 0.219304507 0.667892335 28.58170816 1.714432656 33.40732934 25.45204749 8.21E-09 8.085868929 3.428356064 RHS(ph)DENDGGQPHKR ddPTM_HeLa_A485_30min_R1 1 RHSDENDGGQPHKR 14 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RHS(1)DENDGGQPHKR 78.814 0.002179 151970000 23899 18217 14889 32118 12170 24732 13233 14561 17502 28853 TRUE FALSE FALSE 29215.2501 20347.31968 20397.06068 33872.52501 10958.31207 26026.92928 10405.66145 10989.89192 21014.49086 21660.4781 1.348781406 0.939375372 0.941671767 1.563793969 0.505912751 1.201586094 0.480398512 0.507370699 0.970176686 1 14.40277747 -5.774935601 24.99978934 0.75928452 1.16156543 0.343522059 0.28249695 276.9823423 513067.6864 0.086286579 0.098375488 1.68E-06 5.774935601 0.402280909 RHS(ph)DENDGGQPHKR ddPTM_HeLa_A486_30min_R1 2 RHSDENDGGQPHKR 14 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RHS(1)DENDGGQPHKR;RHS(1)DENDGGQPHKR ; 134.68 4.73E-06 244140000 118370 42477 49977 27465.4 25746.5 153873 49392 42446 165692 144079 TRUE FALSE FALSE 110072.8743 39110.96782 69329.43283 63940.83922 22517.13389 134889.7137 37033.59918 32781.97239 180054.316 108000.6806 1.019186857 0.362136309 0.641935147 0.592041077 0.208490667 1.24897096 0.342901535 0.303534869 1.667159086 1 16.72068088 -7.759022585 24.99998398 1.333579603 0.585135586 0.427566389 0.344161267 53.35215521 551937.9019 0.245953918 0.082988298 1.74E-08 7.759022585 -0.748444018 RHS(ph)DPWGR ddPTM_HeLa_A485_30min_R1 3 RHSDPWGR 8 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 RHS(1)DPWGR;RHS(1)DPWGR;RHS(1)DPWGR ;; 72.34 0.0088146 1227900000 311666 706770 727160 141385 700678 613303 476025 677827 513776 225715 TRUE FALSE FALSE 380995.0265 789420.6034 996166.7437 149108.5045 630916.0381 645414.5967 374318.37 511588.8655 616886.1306 169448.4045 2.248442691 4.658766814 5.878879454 0.879964052 3.723351896 3.80891516 2.209040393 3.019142417 3.640554377 1 17.37048653 -9.656844307 0.249524031 4.25E-13 3.847662172 0.219089939 1.316636336 19.5118003 1.37347185 20.05476499 2.396074517 2.20E-10 9.656844307 3.847662172 RHS(ph)DPWGR ddPTM_HeLa_A486_30min_R1 2 RHSDPWGR 8 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 RHS(1)DPWGR;RHS(1)DPWGR ; 86.114 0.0027162 596070000 270230 278020 347490 9806.2 435620 237040 203498 242070 266100 104766 TRUE FALSE FALSE 251288.2725 255988.6827 482047.4341 22829.32918 380980.4776 207796.4148 152580.648 186955.9454 289165.7623 78531.91169 3.199823703 3.259677208 6.138236339 0.290701305 4.851282357 2.646012435 1.942912693 2.380636627 3.682143425 1 16.2609914 -8.572680607 0.164157739 2.67E-10 4.367159992 0.175262544 1.486098159 17.23104346 1.32422801 21.21795248 9.837209699 2.67E-09 8.572680607 4.367159991 RHS(ph)EQVANGPTPPPR ddPTM_HeLa_A486_30min_R1 1 RHSEQVANGPTPPPR 15 1 A6ND36;A6ND36-2;K7EKG0 A6ND36 FAM83G Protein FAM83G 1 0 RHS(1)EQVANGPTPPPR 86.258 0.00084175 53306000 64114 52213 39595 7828.5 58585 56207 55564 58755 55242 28520 TRUE FALSE FALSE 59619.93969 48075.45172 54927.24439 18225.14363 51236.72302 49272.75181 41661.2995 45377.76911 60030.42104 21378.40637 2.788792516 2.248785569 2.569286197 0.852502442 2.396657737 2.304790683 1.948756085 2.122598305 2.807993263 1 14.38386669 -10.44827057 3.116550097 0.977264771 2.193054866 0.32486021 0.52852383 138721104 170438086.6 27583697.4 0.129880634 3.56E-11 10.44827057 1.215790095 RHS(ph)FTSLTMANK ddPTM_HeLa_A485_30min_R1 1 RHSFTSLTMANK 12 1 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 RHS(0.93)FT(0.059)S(0.01)LT(0.001)MANK 87.429 0.0014461 511670000 595930 960210 755520 432730 1138900 766530 712510 959180 920890 603080 TRUE FALSE FALSE 728492.5726 1072498.207 1035018.288 456368.9442 1025507.117 806664.3255 560276.4178 723939.6011 1105704.176 452743.2549 1.609063337 2.368888316 2.286104269 1.008008268 2.265096401 1.781725773 1.237514666 1.599006928 2.442232246 1 18.78833362 RHS(ph)FTSLTMANK ddPTM_HeLa_A486_30min_R1 2 RHSFTSLTMANK 12 1 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 RHS(0.98)FT(0.02)SLTMANK;RHS(0.94)FT(0.06)SLTMANK ; 168.68 1.02E-10 1260700000 1643460 2031230 1737600 271030 2575470 1744780 1656220 1959860 1980740 1257570 TRUE FALSE FALSE 1528261.941 1870267.937 2410445.255 630971.5371 2252430.537 1529526.783 1241816.238 1513642.661 2152432.138 942666.2866 1.621212048 1.984019121 2.557050452 0.669347728 2.389425154 1.622553819 1.31734449 1.605703612 2.283344773 1 19.84638761 -10.80931939 2.549019206 0.747553703 1.773395528 0.164569869 0.529051591 25492896.54 16629438.34 39624843.06 0.129859492 1.55E-11 10.80931939 1.025841825 RHS(ph)GSYLVTSV ddPTM_HeLa_A486_30min_R1 1 RHSGSYLVTSV 11 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 RHS(0.915)GS(0.085)YLVTSV 71.806 0.03329 589430000 347690 392840 357390 49475 449150 377010 406020 419080 305970 286360 TRUE FALSE FALSE 323318.7265 361709.9277 495780.9792 115180.3003 392813.4188 330498.3394 304429.5016 323664.6325 332491.726 214653.5921 1.506234875 1.685086768 2.309679397 0.536586876 1.829987633 1.539682314 1.418236232 1.507846336 1.548968842 1 17.71165079 -12.14996873 0.179077366 2.11E-13 1.677598204 0.138018875 0.413778365 131.7803169 2.31272655 52.15708776 1.398995088 7.08E-13 12.14996873 1.677598204 RHS(ph)HS(ph)HS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 5 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 0 RHS(1)HS(1)HS(0.999)PMSTR;RHS(1)HS(1)HS(0.99)PMS(0.008)T(0.002)R;RHS(1)HS(1)HS(0.999)PMS(0.001)TR;RHS(1)HS(1)HS(0.997)PMS(0.002)T(0.002)R;RHS(1)HS(0.999)HS(0.993)PMS(0.006)T(0.002)R ;;;; 95.554 0.00051351 28984320000 1568686 2057475 2072294 2023248 2779453 2002124 2225314 2990101 1934400 2836211 TRUE FALSE FALSE 1917634.789 2298078.804 2838921.786 2133772.915 2502720.9 2106952.117 1749857.485 2256774.041 2322616.337 2129195.794 0.900638069 1.079317745 1.333330544 1.002149695 1.175430135 0.989553015 0.82183963 1.059918514 1.090842065 1 21.02187719 -6.310688076 12.98303208 0.98548542 1.104848957 0.15168997 0.123989506 3.831659847 1007.835596 0.044936931 0.039640297 4.89E-07 6.310688076 0.119363537 RHS(ph)HS(ph)HS(ph)PMSTR ddPTM_HeLa_A486_30min_R1 4 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 0 RHS(0.999)HS(0.998)HS(0.981)PMS(0.011)T(0.012)R;RHS(1)HS(1)HS(1)PMSTR;RHS(1)HS(1)HS(0.999)PMS(0.001)TR;RHS(1)HS(1)HS(0.999)PMSTR ;;; 88.427 0.00076976 17047046000 420850 438789 475093 195198 681257 566060 509331 519816 450410 460363 TRUE FALSE FALSE 391350.5883 404017.7616 659061.733 454430.8088 595807.3946 496225.2725 381890.9966 401465.2443 489451.9015 345085.1083 1.134069767 1.170777156 1.909852721 1.316865891 1.726552031 1.437979387 1.106657423 1.16338038 1.418351269 1 18.39659269 -6.71086872 7.646404524 1.186008874 1.465240929 0.239101749 0.240900521 0.356556195 45.87605287 0.094557554 0.072598666 1.95E-07 6.71086872 0.279232056 RHS(ph)HSHS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 5 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 RHS(0.966)HS(0.041)HS(0.993)PMSTR;RHS(0.988)HS(0.025)HS(0.987)PMSTR;RHS(0.982)HS(0.036)HS(0.981)PMSTR;RHS(0.591)HS(0.416)HS(0.992)PMS(0.001)T(0.001)R;RHS(0.998)HS(0.19)HS(0.807)PMS(0.003)T(0.001)R ;;;; 90.706 0.002625 4847100000 232882 328603 258054 196565.6 260610 269280 274752 329559 262424 285929 TRUE FALSE FALSE 284685.7975 367030.2624 353518.9131 207303.481 234662.7533 283379.0844 216048.9907 248734.1385 315090.0897 214652.1624 1.326265686 1.709883834 1.646938513 0.965764699 1.093223337 1.320178102 1.006507404 1.158777697 1.467910158 1 17.71164118 -5.251866847 24.90326211 1.150657112 1.575914823 0.551202051 0.171968068 474.7520984 1235080.755 0.046436113 0.079139069 5.60E-06 5.251866847 0.42525771 RHS(ph)HSHS(ph)PMSTR ddPTM_HeLa_A486_30min_R1 6 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 RHS(0.976)HS(0.025)HS(0.998)PMS(0.001)TR;RHS(0.793)HS(0.209)HS(0.998)PMSTR;RHS(0.995)HS(0.006)HS(0.997)PMS(0.001)T(0.001)R;RHS(0.934)HS(0.067)HS(0.998)PMSTR;RHS(0.998)HS(0.002)HS(0.994)PMS(0.005)T(0.001)R;RHS(0.998)HS(0.021)HS(0.98)PMSTR ;;;;; 115.31 0.00034162 2313154000 181482 168379.6 189597 29077.8 199319 199275 161411 169014 173568 134469.1 TRUE FALSE FALSE 168761.049 155036.5873 263014.036 67694.58791 174318.5524 174690.4766 121024.2606 130533.2017 188613.014 100797.1621 1.674263892 1.538104685 2.609339692 0.671592201 1.729399408 1.733089235 1.200671309 1.295008699 1.871213535 1 16.6210955 -10.10018006 0.076654125 4.48E-09 2.347988873 0.130829385 0.472137686 198.7490406 2.878104325 66.68505572 26.53425416 7.94E-11 10.10018006 2.347988868 RHS(ph)HSHSPMSTR ddPTM_HeLa_A485_30min_R1 2 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RHS(0.333)HS(0.333)HS(0.333)PMSTR;RHS(0.828)HS(0.071)HS(0.102)PMSTR ; 97.836 0.00058635 33157400 9866.1 18002.1 14752.4 4643.2 10234.5 13472.2 11412.1 13565 11608 11303.4 TRUE FALSE FALSE 12060.77991 20107.289 20209.92666 4896.846259 9215.517244 14177.58356 8973.811607 10238.16248 13937.61913 8485.670404 1.421311379 2.369558095 2.381653505 0.577072409 1.086009332 1.670767645 1.057525355 1.206523703 1.642488862 1 13.05081293 -5.248040772 24.99926908 1.197582818 2.088712732 0.521445276 0.385768783 631.5614848 1178372.672 0.105407098 0.181229444 5.65E-06 5.248040772 0.891129915 RHS(ph)HSHSPMSTR ddPTM_HeLa_A486_30min_R1 2 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RHS(0.972)HS(0.025)HS(0.003)PMSTR;RHS(0.941)HS(0.059)HSPMSTR ; 79.771 0.0052704 47137000 11289.2 10794.4 13161 0 13051 10804.4 8262.2 8830.3 8565.7 4901 TRUE FALSE FALSE 10497.88538 9939.012431 18257.29166 0 11414.02188 9471.462979 6194.910171 6819.833454 9308.181773 3673.7577 2.857533413 2.705407717 4.969650466 0 3.106906556 2.578140355 1.686259867 1.856364521 2.53369507 1 11.84304076 -1.000000648 0.080811744 3.56E-09 8.622885349 0.187669864 1.137565142 326.3766504 1.924971215 30.63674795 314.0685411 0.099999851 1.000000648 8.622885345 RHS(ph)IAIGEVPACR ddPTM_HeLa_A485_30min_R1 1 RHSIAIGEVPACR 13 1 Q8WUY9-2;Q8WUY9 Q8WUY9-2 DEPDC1B DEP domain-containing protein 1B 1 0 RHS(1)IAIGEVPACR 106.57 0.0002353 324860000 203650 220270 171290 256460 211100 217940 263760 267050 186850 314690 TRUE FALSE FALSE 248951.2399 246028.6604 234657.299 270469.7604 190082.1428 229351.0014 207405.5213 201555.5688 224349.0811 236243.5744 1.053790523 1.04141948 0.993285424 1.144876685 0.804602382 0.970824294 0.877930846 0.853168469 0.949651569 1 17.84991556 -5.75991517 24.99998119 0.903522818 1.052487224 0.562853076 0.064113868 29.0735762 476856.6522 0.018299507 0.022375681 1.74E-06 5.75991517 0.148964405 RHS(ph)IAIGEVPACR ddPTM_HeLa_A486_30min_R1 1 RHSIAIGEVPACR 13 1 Q8WUY9-2;Q8WUY9 Q8WUY9-2 DEPDC1B DEP domain-containing protein 1B 1 0 RHS(1)IAIGEVPACR 136.43 5.61E-06 237970000 208340 197590 183130 84755 184840 270990 254170 226960 231390 262740 TRUE FALSE FALSE 193736.4419 181932.2488 254042.8404 197313.9233 161655.6436 237558.009 190573.9777 175286.1625 251447.0715 196948.1938 0.983692402 0.923756879 1.289896777 1.001856983 0.820802874 1.206195418 0.967635061 0.890011526 1.276716819 1 17.58745666 -7.757758298 24.99999773 1.138358371 1.015389606 0.107556604 0.146797742 210.692305 1430994.562 0.106655096 0.036754079 1.75E-08 7.757758298 -0.122968765 RHS(ph)MENMELMK ddPTM_HeLa_A485_30min_R1 2 RHSMENMELMK 11 1 A0A2R8Y6E3;P81274 A0A2R8Y6E3 GPSM2 G-protein-signaling modulator 2 1 0 RHS(1)MENMELMK;RHS(1)MENMELMK ; 188 6.42E-11 711360000 572950 586870 448600 679060 735960 651460 865540 921860 541730 947090 TRUE FALSE FALSE 700400.7508 655499.3414 614555.8078 716155.3283 662685.2383 685569.4383 680610.3082 695772.3896 650450.242 710997.8929 0.985095396 0.921942734 0.864356722 1.007253798 0.932049511 0.964235541 0.957260654 0.978585727 0.914841307 1 19.43948576 -5.274917031 24.98908785 0.96228379 0.923612722 0.197672719 0.037681154 1257.052756 2330714.944 0.01034872 0.01545934 5.31E-06 5.274917031 -0.038671068 RHS(ph)MENMELMK ddPTM_HeLa_A486_30min_R1 1 RHSMENMELMK 11 1 A0A2R8Y6E3;P81274 A0A2R8Y6E3 GPSM2 G-protein-signaling modulator 2 1 0 RHS(1)MENMELMK 114.69 0.00022561 170030000 160210 206290 103860 68920 184140 177640 200190 177580 134270 195150 TRUE FALSE FALSE 148980.1063 189942.8291 144077.3735 160449.243 161043.4442 155724.5829 150100.3446 137148.9105 145908.6317 146283.1698 1.01843641 1.298459894 0.984921052 1.096840076 1.100902068 1.064542033 1.026094422 0.937557689 0.997439637 1 17.15840427 -6.761093937 1.794084696 0.975213884 1.104707992 0.30774646 0.079096057 0.412941256 2.718127309 0.040880095 0.025450568 1.73E-07 6.761093937 0.129494108 RHS(ph)PESPSIAVVESELVAEYITTER ddPTM_HeLa_A485_30min_R1 2 RHSPESPSIAVVESELVAEYITTER 25 1 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2 Q7Z589 EMSY Protein EMSY 1 0 RHS(0.333)PES(0.333)PS(0.333)IAVVES(0.001)ELVAEYITTER;RHS(0.333)PES(0.333)PS(0.333)IAVVESELVAEYITTER ; 130.65 4.20E-06 44948000 13048.4 17923 16964 11884 17518.9 14286.9 18268.1 19731.6 16920 20628.5 TRUE FALSE FALSE 15950.97156 20018.93894 23239.68953 12533.19283 15774.6568 15034.93999 14364.9712 14892.39416 20315.6888 15486.19459 1.030012342 1.292695815 1.500671414 0.809313919 1.018627056 0.970860847 0.927598521 0.961656143 1.311858035 1 13.91869505 -5.266257096 24.99995783 0.994936926 1.276283451 0.384476129 0.159051038 405.6842758 2105166.641 0.044587747 0.068595849 5.42E-06 5.266257096 0.281346525 RHS(ph)PPIEK ddPTM_HeLa_A485_30min_R1 6 RHSPPIEK 8 1 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK ;;;;; 158.3 4.43E-05 6709820000 5218850 5840160 4669710 5958810 6844810 6254060 8244880 8816770 5331570 7865300 TRUE FALSE FALSE 6379765.178 6523115.909 6397230.052 6284324.702 6163316.683 6581512.911 6483294.034 6654443.333 6401567.195 5904625.46 1.08046907 1.104746771 1.083426899 1.06430539 1.043811623 1.114636814 1.098002588 1.126988219 1.084161432 1 22.49341412 -6.292468086 24.95090133 1.093522366 1.076819881 0 0.035359518 2322.630977 1867670.863 0.012056256 0.01063378 5.10E-07 6.292468086 -0.016702485 RHS(ph)PPIEK ddPTM_HeLa_A486_30min_R1 6 RHSPPIEK 8 1 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK;RHS(1)PPIEK ;;;;; 169.52 1.48E-05 5239240000 5620250 5322480 3311140 2063230 5608160 5480900 6378570 6098200 4250050 6454790 TRUE FALSE FALSE 5226299.498 4900707.301 4593302.083 4803303.71 4904732.279 4804722.284 4782584.32 4709772.983 4618447.756 4838468.57 1.080155719 1.012863312 0.949329735 0.992732233 1.013695182 0.99302542 0.988450013 0.973401587 0.954526766 1 22.20611906 -4.346119179 3.321826975 0.984019966 1.08526284 0.70339552 0.019007502 0.150830525 2.708469722 0.005071393 0.033780689 4.51E-05 4.346119179 0.101242874 RHS(ph)PS(ph)PRPR ddPTM_HeLa_A485_30min_R1 3 RHSPSPRPR 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RHS(1)PS(1)PRPR;RHS(1)PS(1)PRPR;RHS(1)PS(1)PRPR ;; 65.395 0.013398 1190260000 296477 272500 157342 315496 135029 333646 192309 274404 261348 274881 TRUE FALSE FALSE 362427.2858 304366.5046 215549.3533 332730.7476 121585.0386 351115.1886 151220.6111 207105.9888 313798.1464 206358.2255 1.75630162 1.47494244 1.044539673 1.612393917 0.58919405 1.701483853 0.732806317 1.003623617 1.520647629 1 17.65479142 -3.649417266 0.837832071 1.127085163 3.044746437 0.23327654 0.348552113 8.322878229 2.194158364 0.116279311 18.75944126 0.000224173 3.649417266 1.917661274 RHS(ph)PS(ph)PRPR ddPTM_HeLa_A486_30min_R1 2 RHSPSPRPR 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RHS(1)PS(1)PRPR;RHS(1)PS(1)PRPR ; 65.395 0.013398 371050000 121905 59418 95578 40732.2 41478 150697 66935 58252 141056 140259 TRUE FALSE FALSE 113360.089 54709.50128 132588.3613 94826.62009 36275.44247 132105.5363 50187.15503 44989.29123 153282.8477 105137.2335 1.07821069 0.520362763 1.261098061 0.901931856 0.345029456 1.25650573 0.477349017 0.427910168 1.45793115 1 16.68191415 -3.058957557 14.01399392 0.843588159 41.84348226 0 0.382766753 0 1.84E-17 0.083081506 9.47E-10 0.000873057 3.058957557 40.9998941 RHS(ph)PS(ph)RS(ph)AS(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RHSPSRSASPSPR 13 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 5 0 RHS(1)PS(1)RS(1)AS(1)PS(1)PR 64.266 0.0064911 190450000 79779 93578 107230 134950 177000 109570 140460 182050 126370 194110 TRUE FALSE FALSE 97525.56332 104521.1331 146898.8392 142321.9768 159377.2585 115306.9158 110449.5735 137401.9521 151731.2999 145721.9493 0.669257883 0.71726417 1.008076271 0.976668082 1.093707978 0.791280355 0.757947406 0.942904982 1.041238472 1 17.15285867 -4.695178632 6.253454292 0.942582886 0.68567288 0.51760841 0.099565597 0.177157335 12.47683007 0.027834461 0.074723735 2.02E-05 4.695178632 -0.256910006 RHS(ph)SDINHLVTQGR ddPTM_HeLa_A485_30min_R1 1 RHSSDINHLVTQGR 14 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 RHS(0.566)S(0.434)DINHLVTQGR 59.182 0.026293 737110000 514800 1009900 966300 359120 941090 606950 767580 743810 654670 568090 TRUE FALSE FALSE 629315.484 1127999.02 1323774.581 378737.8163 847391.7752 638728.9635 603580.2624 561389.4313 786056.264 426475.6179 1.475618904 2.644932026 3.103986548 0.888064406 1.986964177 1.49769163 1.415274958 1.3163459 1.843144675 1 18.70210374 -5.265008836 24.99986174 1.460780588 2.43185444 0.458744312 0.489820308 272.8327832 1910877.288 0.134129613 0.208159045 5.43E-06 5.265008836 0.971073851 RHS(ph)SDINHLVTQGR ddPTM_HeLa_A486_30min_R1 1 RHSSDINHLVTQGR 14 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 RHS(0.77)S(0.23)DINHLVTQGR 65.287 0.01411 738430000 566040 580250 693510 122300 733890 420930 511570 492650 551070 348550 TRUE FALSE FALSE 526363.519 534268.8768 962055.6448 284720.5807 641838.6729 368999.9363 383569.7752 380484.3495 598837.1913 261270.8113 2.014628103 2.044885435 3.682216318 1.089752733 2.456603054 1.412327441 1.468092717 1.456283415 2.292017192 1 17.99518643 -5.290419568 24.99699507 1.638272388 2.527008336 0.349427839 0.612203244 813.9505844 702075.0691 0.167871811 0.249038351 5.12E-06 5.290419568 0.888735948 RHS(ph)SDINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_HeLa_A486_30min_R1 2 RHSSDINHLVTQGRESPEGSYTDDANQEVR 30 2 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 2 0 RHS(0.913)S(0.086)DINHLVT(0.143)QGRES(0.846)PEGS(0.006)Y(0.003)T(0.002)DDANQEVR;RHS(0.787)S(0.213)DINHLVTQGRES(1)PEGSYTDDANQEVR ; 246.49 1.05E-50 1485130000 119265 104691 125059 18434.4 161022 82971 101874 99141 113178 62141 TRUE FALSE FALSE 110905.1394 96394.90388 173485.194 42916.21482 140825.1193 72734.88161 76384.04769 76568.75853 122988.3602 46580.48913 2.380935483 2.069426614 3.72441761 0.921334568 3.023264073 1.561488146 1.639829231 1.643794644 2.640340676 1 15.50743817 -5.858706607 0.991917048 1.75246228 2.53165637 0.146372101 0.781599528 1.129855135 2.400717357 0.363741226 0.506974569 1.38E-06 5.858706607 0.77919409 RHS(ph)SETFSSTPSATR ddPTM_HeLa_A485_30min_R1 1 RHSSETFSSTPSATR 15 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 RHS(0.636)S(0.363)ETFSSTPSATR 104.68 0.00012189 440390000 38708 57360 60271 42855 61090 52635 66792 75175 47994 50853 TRUE FALSE FALSE 47318.46106 64067.75303 82567.75099 45196.06014 55007.6651 55390.88721 52521.34356 56738.21338 57625.95557 38176.28298 1.239472714 1.67820825 2.162802257 1.183877963 1.440885828 1.450924052 1.375758441 1.486216283 1.509470045 1 15.22038902 -12.19137835 0.181904423 2.17E-12 1.636047287 0.261207421 0.256159758 89.75045173 1.574046253 35.34112437 0.869990238 6.44E-13 12.19137835 1.636047287 RHS(ph)SETFSSTPSATR ddPTM_HeLa_A486_30min_R1 2 RHSSETFSSTPSATR 15 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 RHS(0.604)S(0.395)ETFSSTPSATR;RHS(0.613)S(0.387)ET(0.001)FSSTPSATR ; 85.51 0.00097844 399420000 67539 67291 66937 18880 89607 43882 69532 72709 60747 52446 TRUE FALSE FALSE 62804.86487 61958.61609 92856.79904 43953.59414 78367.65451 38468.285 52134.35817 56154.74793 66012.59887 39313.18023 1.597552386 1.576026557 2.361976276 1.118037103 1.993419358 0.978508601 1.326129249 1.428394945 1.679146751 1 15.26272545 -6.256137568 24.98768153 1.311941428 1.72205971 0.284920392 0.352404292 647.8584932 3053391.023 0.115090504 0.11186278 5.54E-07 6.256137568 0.410118282 RHS(ph)SPSSPTSPK ddPTM_HeLa_A485_30min_R1 1 RHSSPSSPTSPK 12 1 O94921;C9JWL6;C9IYJ9;O94921-3;O94921-2 O94921 CDK14 Cyclin-dependent kinase 14 1 0 RHS(0.252)S(0.252)PS(0.252)S(0.205)PT(0.034)S(0.006)PK 47.201 0.03505 14893000 20373 33196 30639 17067 46058 26594 38302 36977 30617 25415 TRUE FALSE FALSE 24904.90356 37077.98343 41973.6411 17999.32699 41472.3038 27986.42072 30118.4648 27908.33277 36761.55106 19079.50823 1.30532209 1.943340624 2.199933069 0.943385269 2.173656852 1.466831345 1.578576578 1.46273858 1.926755691 1 14.21973637 -10.96312585 2.780563979 0.471155056 1.669708312 0.218734381 0.377977967 33592762.24 7773939.657 113618606.7 0.090784971 1.09E-11 10.96312585 1.198553257 RHS(ph)SSDLAR ddPTM_HeLa_A485_30min_R1 4 RHSSSDLAR 9 1 G5E9Y3;Q8WWN8-2;Q8WWN8 G5E9Y3 ARAP3 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3" 1 0 RHS(0.754)S(0.226)S(0.02)DLAR;RHS(0.972)S(0.027)S(0.002)DLAR;RHS(0.929)S(0.056)S(0.015)DLAR;RHS(0.952)S(0.043)S(0.005)DLAR ;;; 126.1 0.00016924 658989000 115605 196427 153490 55422.5 89160 124185 91263 139466 112265 77804.8 TRUE FALSE FALSE 141320.9334 219397.429 210272.3383 58450.09084 80282.91734 130687.1346 71763.9145 105261.7448 134795.5557 58409.49525 2.419485613 3.756194571 3.599968419 1.000695017 1.374484011 2.237429617 1.228634389 1.802134129 2.307767858 1 15.8339153 -5.254995326 24.92832072 1.604004876 3.308314134 0.671919168 0.541648231 287.6123657 1112602.868 0.146963312 0.246878999 5.56E-06 5.254995326 1.704309259 RHS(ph)SSDLAR ddPTM_HeLa_A486_30min_R1 2 RHSSSDLAR 9 1 G5E9Y3;Q8WWN8-2;Q8WWN8 G5E9Y3 ARAP3 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3" 1 0 RHS(0.934)S(0.058)S(0.008)DLAR;RHS(0.987)S(0.013)SDLAR ; 116.9 0.00035853 251946000 48016 31180 70568 3682 34583 59521 24602 27542 78777 15205.4 TRUE FALSE FALSE 44650.32635 28709.18324 97893.81948 8571.882078 30245.27767 52177.90419 18446.31939 21271.28784 85605.45379 11397.86887 3.917427623 2.518820279 8.588782745 0.752060072 2.653590598 4.577864931 1.618400738 1.866251321 7.510654384 1 13.47647648 -5.313306989 24.99940814 2.902191816 4.759440598 0.146805351 2.355070603 724.1250076 349015.7932 0.649636402 0.963567736 4.86E-06 5.313306989 1.857248782 RHS(ph)T(ph)SPS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 RHSTSPSPSR 10 1 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 3 0 RHS(0.842)T(0.658)S(0.658)PS(0.769)PS(0.072)R 61.11 0.019687 31493000 76918 55073 74254 24148 60027 91850 60518 50933 86482 82258 TRUE FALSE FALSE 71526.4454 50708.81491 103007.1374 56217.76437 52497.85393 80518.48086 45375.75631 39336.66776 93978.32939 61660.06139 1.160012556 0.822393195 1.67056495 0.911737081 0.851407747 1.305844968 0.7359019 0.637960243 1.524136163 1 15.91204871 RHS(ph)T(ph)SPSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 RHSTSPSPSR 10 1 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 3 0 RHS(0.941)T(0.543)S(0.516)PS(0.227)PS(0.773)R 123.36 8.97E-05 75321000 119710 173270 120430 146880 101960 133250 134580 165090 134590 152890 TRUE FALSE FALSE 146339.0765 193532.4193 164982.0685 154903.6825 91808.5044 140226.764 105825.8836 124601.4186 161600.9785 114777.3367 1.274982333 1.68615534 1.437409799 1.349601645 0.799883557 1.221728679 0.922010273 1.085592524 1.40795198 1 16.80847828 -5.560396487 9.043742422 1.07632771 1.472692406 0.503898102 0.179774446 0.235552659 53.06331633 0.051855496 0.067180316 2.75E-06 5.560396487 0.396364697 RHS(ph)TS(ph)PS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 RHSTSPSPSR 10 1 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 3 0 RHS(0.963)T(0.449)S(0.619)PS(0.649)PS(0.32)R 93.348 0.0023817 193580000 338240 353510 234310 431280 199810 331780 327680 402320 361080 477380 TRUE FALSE FALSE 413480.3211 394849.9194 320991.0195 454839.7343 179916.2148 349151.4878 257668.4911 303650.3892 433545.444 358377.9515 1.15375491 1.101769564 0.895677365 1.269162158 0.502029252 0.974254935 0.718985334 0.847290934 1.20974363 1 18.45112236 -5.721709459 24.9999992 0.86487033 1.089895406 0.249333098 0.194032177 229.2203875 144235.5396 0.055815134 0.072056006 1.90E-06 5.721709459 0.225025076 RHS(ph)TSDKMHFPR ddPTM_HeLa_A485_30min_R1 1 RHSTSDKMHFPR 12 2 F8WCI7;C9JQR6;Q13308-5;Q13308-3;Q13308-4;Q13308-2;Q13308;Q13308-6 F8WCI7 PTK7 Inactive tyrosine-protein kinase 7 1 0 RHS(0.629)T(0.186)S(0.186)DKMHFPR 105.53 0.00021861 282280000 265330 394740 194190 199080 239570 314390 355110 529550 296360 439720 TRUE FALSE FALSE 324351.7431 440901.4092 266028.9619 209955.2363 215717.5696 330850.9743 279237.8475 399677.0322 355836.7336 330105.8964 0.982568765 1.335636273 0.805889761 0.63602389 0.653479904 1.002257087 0.845903846 1.210753993 1.077947221 1 18.33256938 -7.252197314 24.7304612 1.108262957 0.893021746 0.185862913 0.192936068 997.13265 2668194.864 0.102598367 0.058168819 5.60E-08 7.252197314 -0.215241211 RHS(ph)TSDKMHFPR ddPTM_HeLa_A486_30min_R1 1 RHSTSDKMHFPR 12 2 F8WCI7;C9JQR6;Q13308-5;Q13308-3;Q13308-4;Q13308-2;Q13308;Q13308-6 F8WCI7 PTK7 Inactive tyrosine-protein kinase 7 1 0 RHS(0.639)T(0.181)S(0.181)DKMHFPR 115.04 0.00010937 219050000 249240 165730 147950 34168 293660 185620 191000 165570 166930 203720 TRUE FALSE FALSE 231769.5631 152596.9512 205240.2022 79544.83076 256826.4245 162720.0916 143209.7798 127873.3254 181399.6268 152707.186 1.517738419 0.99927813 1.344011422 0.520897758 1.681822783 1.065569315 0.937806423 0.837375953 1.187891883 1 17.22040843 -2.415456703 1.622821755 1.060704587 172.0481874 0.172423008 0.292158554 974.3312239 8.71039758 0.077145327 615638.6935 0.003841876 2.415456703 170.9874828 RHS(ph)TSDLSDATFSDIR ddPTM_HeLa_A486_30min_R1 1 RHSTSDLSDATFSDIR 16 1 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RHS(0.634)T(0.255)S(0.111)DLSDATFSDIR 135.98 4.57E-06 213340000 127460 162630 153410 16843 179900 169130 176790 155410 180250 113770 TRUE FALSE FALSE 118525.7122 149742.6065 212814.4605 39211.3552 157335.2645 148264.4602 132555.2721 120026.5356 195874.2151 85281.25148 1.389821445 1.755867836 2.495442512 0.459788693 1.844898636 1.73853523 1.554330756 1.40741996 2.296802776 1 16.37994099 -10.237493 3.367975287 0.998255683 1.649559032 0.124885597 0.523692282 137661196.6 200331216.3 2492041.301 0.124356558 5.79E-11 10.237493 0.651303349 RHS(ph)TSDLSDATFSDIRR ddPTM_HeLa_A485_30min_R1 1 RHSTSDLSDATFSDIRR 17 2 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RHS(0.956)T(0.042)S(0.002)DLSDATFSDIRR 244.31 7.11E-43 362220000 80951 111950 141650 64191 129050 95397 127820 133390 120020 118900 TRUE FALSE FALSE 98958.27067 125041.5787 194052.2295 67697.59179 116201.3289 100391.8394 100510.2128 100675.8934 144106.9131 89260.41819 1.108646729 1.400862568 2.174000901 0.758427903 1.301823711 1.124707249 1.126033407 1.127889555 1.614454828 1 16.44573295 -5.284994281 24.99540777 1.160019378 1.545139623 0.256291817 0.319960167 1112.400148 1180426.779 0.089477625 0.132802565 5.19E-06 5.284994281 0.385120246 RHS(ph)TSDLSDATFSDIRR ddPTM_HeLa_A486_30min_R1 2 RHSTSDLSDATFSDIRR 17 2 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RHS(0.946)T(0.052)S(0.002)DLSDATFSDIRR;RHS(0.924)T(0.076)SDLSDATFSDIRR ; 182.13 6.04E-18 889350000 232602 244190 286900 36623.4 353810 243557 285630 275220 267120 183510 TRUE FALSE FALSE 216297.801 224839.4951 397995.3634 85261.12604 309431.8507 213509.4136 214162.3529 212558.414 290274.1767 137557.9016 1.57241277 1.634508033 2.893293362 0.619819909 2.249466204 1.552142125 1.556888776 1.545228675 2.110196313 1 17.06967949 -10.87434173 2.448760306 0.634342329 1.742741637 0.138699566 0.559206808 23138367.46 13063354.1 49089676.43 0.130695424 1.34E-11 10.87434173 1.108399308 RHS(ph)VSEMTSCPEPQGFSDPPGQGPTGTFR ddPTM_HeLa_A485_30min_R1 1 RHSVSEMTSCPEPQGFSDPPGQGPTGTFR 29 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 0 RHS(0.387)VS(0.169)EMT(0.22)S(0.22)CPEPQGFS(0.004)DPPGQGPTGTFR 80.667 0.001831 169270000 16805 27556 23800 19025 31697 22615 28846 35192 21286 30817 TRUE FALSE FALSE 20543.21427 30778.43449 32604.6104 20064.28758 28541.13539 23799.08643 22682.81645 26561.10682 25557.90495 23134.88904 0.887975483 1.330390409 1.409326422 0.867273992 1.233683694 1.028709772 0.980459271 1.148097437 1.104734278 1 14.49778256 -5.260044925 24.99987491 1.061659401 1.22134672 0.171120616 0.157018902 220.4312182 3951873.254 0.042639451 0.069121382 5.49E-06 5.260044925 0.159687319 RHS(ph)VTLPSSK ddPTM_HeLa_A485_30min_R1 4 RHSVTLPSSK 10 1 Q07352;G3V2D5;G3V515;G3V2P5 Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" 1 0 RHS(0.975)VT(0.025)LPSSK;RHS(0.994)VT(0.006)LPSSK;RHS(0.979)VT(0.021)LPSSK;RHS(0.978)VT(0.022)LPSSK ;;; 119.32 0.0001776 1665510000 2748230 2875480 2319180 2461230 3492550 3362370 4464330 4687610 3103850 4326150 TRUE FALSE FALSE 3359564.282 3211742.373 3177141.191 2595680.763 3144819.459 3538418.494 3510489.425 3537966.298 3726764.225 3247720.422 1.03443765 0.988922061 0.978268071 0.799231592 0.968315942 1.089508343 1.080908751 1.089369108 1.147501552 1 21.63099601 -6.227483972 5.199078409 1.087386331 0.947385658 0.481492449 0.066105984 0.172717667 12.76097021 0.023436261 0.022851934 5.92E-07 6.227483972 -0.140000673 RHS(ph)VTLPSSK ddPTM_HeLa_A486_30min_R1 3 RHSVTLPSSK 10 1 Q07352;G3V2D5;G3V515;G3V2P5 Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" 1 0 RHS(0.996)VT(0.004)LPSSK;RHS(0.976)VT(0.024)LPSSK;RHS(0.998)VT(0.002)LPSSK ;; 124.42 7.04E-05 1635960000 2745070 2534590 1734790 844120 2863550 2810910 3305370 3486050 2224130 3015910 TRUE FALSE FALSE 2552654.769 2333739.858 2406547.147 1965154.019 2504376.857 2464128.503 2478331.465 2692352.515 2416919.379 2260706.506 1.129140276 1.032305543 1.06451109 0.869265433 1.107785045 1.089981604 1.096264136 1.190934121 1.069099139 1 21.10834228 RHS(ph)VVAGGGGGEGR ddPTM_HeLa_A485_30min_R1 4 RHSVVAGGGGGEGR 14 1 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 RHS(1)VVAGGGGGEGR;RHS(1)VVAGGGGGEGR;RHS(1)VVAGGGGGEGR;RHS(1)VVAGGGGGEGR ;;; 104.84 0.00022213 263467000 84465.8 110492 110650 76931 140677 97207 104498 121341 109391 112268 TRUE FALSE FALSE 103254.9258 123413.0782 151584.0395 81133.54573 126670.7039 102296.6082 82171.14863 91581.92949 131344.7703 84281.65374 1.225117463 1.464293506 1.798541353 0.962647767 1.502945164 1.213747045 0.974958902 1.086617614 1.558402861 1 16.362931 -5.270199937 24.98204589 1.194842794 1.492815055 0.269960372 0.233526095 864.8425317 2466227.295 0.065577257 0.098932267 5.37E-06 5.270199937 0.297972262 RHS(ph)VVAGGGGGEGR ddPTM_HeLa_A486_30min_R1 4 RHSVVAGGGGGEGR 14 1 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 RHS(1)VVAGGGGGEGR;RHS(1)VVAGGGGGEGR;RHS(1)VVAGGGGGEGR;RHS(1)VVAGGGGGEGR ;;; 178.03 1.10E-13 292709000 182089 199219 169740 64554.3 208589 180051 194991 204139 170007 171669 TRUE FALSE FALSE 169325.5014 183432.1609 235467.8738 150285.6728 182425.8226 157838.1382 146202.1894 157661.006 184743.3436 128681.965 1.315844853 1.425469069 1.829843628 1.167884503 1.417648717 1.226575443 1.136151359 1.225198931 1.435658397 1 16.97345035 -5.310669193 24.99962728 1.243038557 1.513895437 0.381779323 0.170642276 401.8748082 204077.0807 0.047584647 0.07057954 4.89E-06 5.310669193 0.27085688 RHS(ph)WGPGK ddPTM_HeLa_A485_30min_R1 6 RHSWGPGK 8 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK ;;;;; 123.67 0.00037175 9920950000 6392920 8267450 6980500 6441920 9818190 8027270 9773850 11008760 7437020 8884930 TRUE FALSE FALSE 7815002.999 9234256.36 9562877.433 6793825.778 8840656.53 8447565.445 7685587.102 8308844.349 8929561.698 6670080.466 1.171650483 1.384429529 1.433697462 1.018552297 1.325419772 1.266486287 1.152248034 1.245688773 1.338748722 1 22.66927274 -10.72665198 2.626839033 0.950258396 1.259920184 0.311538102 0.115799047 13863667.49 11661704.88 4535946.14 0.029905486 1.88E-11 10.72665198 0.309661788 RHS(ph)WGPGK ddPTM_HeLa_A486_30min_R1 6 RHSWGPGK 8 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK;RHS(1)WGPGK ;;;;; 106.67 0.0008089 10452360000 8034000 7629890 5864580 2800620 8400610 7096360 8577110 8843020 6472350 7998220 TRUE FALSE FALSE 7470858.088 7025269.729 8135502.435 6519984.895 7346927.161 6220883.254 6431026.359 6829657.388 7033378.509 5995413.652 1.246095519 1.171773982 1.356954317 1.087495421 1.225424564 1.037607013 1.072657657 1.139146985 1.173126479 1 22.51542786 -5.671775398 1.529069473 1.098552038 1.243747327 0.40502019 0.07862101 0.411253809 1.988703109 0.02753636 0.040815883 2.13E-06 5.671775398 0.145195288 RHS(ph)YAGEQPETVPYLLLNR ddPTM_HeLa_A485_30min_R1 1 RHSYAGEQPETVPYLLLNR 19 1 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 0 RHS(0.47)Y(0.407)AGEQPET(0.123)VPYLLLNR 56.215 0.023526 20888000 9980.6 14836 13579 9922.7 13713 12238 15376 17156 14735 14275 TRUE FALSE FALSE 12200.75004 16570.94114 18602.43717 10464.75198 12347.68557 12878.76276 12090.79199 12948.4641 17692.17934 10716.50521 1.138500826 1.546300852 1.735867879 0.976507898 1.152211969 1.201768907 1.128240201 1.208273019 1.650928077 1 13.38754688 -5.266066162 24.99676127 1.193511853 1.480830949 0.259562753 0.220576389 533.5168169 2882392.424 0.062102524 0.095640258 5.42E-06 5.266066162 0.287319097 RHSFT(ph)SLTMANK ddPTM_HeLa_A485_30min_R1 1 RHSFTSLTMANK 12 1 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 RHS(0.321)FT(0.345)S(0.321)LT(0.014)MANK 54.812 0.035994 430940000 420210 893090 787500 217140 914280 690820 585420 762360 769840 269850 TRUE FALSE FALSE 513684.2648 997529.1066 1078829.021 229001.8084 823251.073 726990.267 460340.2346 575390.0147 924339.8266 202581.3612 2.535693618 4.924091242 5.325411055 1.130418944 4.063804626 3.588633538 2.272372107 2.840290988 4.562807857 1 17.62814192 -10.11052614 0.333721118 1.43E-39 3.670825578 0.241608399 1.255747901 24.93301071 2.05650624 29.38965477 1.149851784 7.75E-11 10.11052614 3.670825578 RHSHS(ph)HS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 1 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 RHS(0.393)HS(0.612)HS(0.995)PMSTR 63.631 0.030348 43763000 4950.5 6761.4 6496.5 4451.2 4953.3 8496.2 4959.2 6177.4 6623.7 5325.2 TRUE FALSE FALSE 6051.721646 7552.086914 8899.825692 4694.357785 4460.13206 8941.047894 3899.626407 4662.382964 7953.015834 3997.725643 1.513791137 1.889095848 2.226222229 1.174257116 1.115667371 2.236533643 0.975461239 1.166258863 1.989385101 1 11.96496375 -3.94471347 0.051195517 1.38E-08 3.576836755 0.136120032 0.449905383 501.7972047 3.676156374 83.78372905 188.9477735 0.000113576 3.94471347 3.576836741 RHSHSHS(ph)PMSTR ddPTM_HeLa_A485_30min_R1 3 RHSHSHSPMSTR 12 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RHS(0.304)HS(0.304)HS(0.391)PMS(0.001)T(0.001)R;RHS(0.217)HS(0.119)HS(0.664)PMSTR;RHS(0.035)HS(0.035)HS(0.93)PMSTR ;; 86.548 0.0021231 184477000 63047.2 135861.7 105612.4 40366.1 69211.3 83746.2 86271.1 116941.9 91494.9 64077.3 TRUE FALSE FALSE 77071.83213 151749.544 144682.8217 42571.19783 62320.37996 88131.02154 67838.57471 88261.71567 109857.0872 48104.00837 1.602191475 3.154613288 3.007708226 0.884982339 1.295534033 1.832093094 1.410247857 1.834810002 2.283740813 1 15.55386949 -5.251962469 24.99748713 1.541537885 2.644815255 0.44848097 0.547907822 617.9350086 1629939.54 0.150148871 0.255744864 5.60E-06 5.251962469 1.103277371 RHSS(ph)DINHLVTQGR ddPTM_HeLa_A485_30min_R1 1 RHSSDINHLVTQGR 14 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 RHS(0.436)S(0.564)DINHLVTQGR 56.327 0.031989 843160000 127270 420510 421780 53897 427840 247060 213230 334290 261380 84668 TRUE FALSE FALSE 155580.7724 469684.9865 577813.9737 56841.25664 385242.7474 259995.6796 167671.6686 252304.8534 313836.5685 63561.8258 2.447707731 7.389419367 9.090581752 0.89426721 6.060913804 4.090437559 2.637930337 3.969439993 4.937500843 1 15.95587295 -5.26097191 24.99999977 3.60542468 6.41725443 0.273375345 2.170146302 57.91190468 3097018.576 0.588940199 0.945636598 5.48E-06 5.26097191 2.81182975 RHSS(ph)DINHLVTQGR ddPTM_HeLa_A486_30min_R1 1 RHSSDINHLVTQGR 14 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 RHS(0.323)S(0.677)DINHLVTQGR 96.487 0.00078457 730900000 650920 707740 811010 32730 887380 397040 443880 416910 588310 180840 TRUE FALSE FALSE 605293.8694 651656.1049 1125054.792 76197.09408 776076.5259 348057.2416 332816.5291 321988.6941 639305.1845 135556.4869 4.465251963 4.807266104 8.299527504 0.562105848 5.725115363 2.567617747 2.455187034 2.375310111 4.716153383 1 17.04853463 -5.263645923 24.99799248 2.930320848 5.75234019 0.397118335 1.733145411 207.4145689 2349812.934 0.464890343 0.729259327 5.45E-06 5.263645923 2.822019342 RHSS(ph)DINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_HeLa_A485_30min_R1 1 RHSSDINHLVTQGRESPEGSYTDDANQEVR 30 2 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 2 0 RHS(0.395)S(0.605)DINHLVT(0.026)QGRES(0.965)PEGS(0.008)YTDDANQEVR 157.85 2.05E-10 943970000 58640 105060 107330 34703 118990 74298 84710 104560 99194 64347 TRUE FALSE FALSE 71684.26569 117345.8531 147035.8334 36598.73702 107142.9378 78188.12839 66611.01648 78916.49606 119101.3259 48306.47712 1.483947288 2.429195009 3.043811972 0.757636226 2.21798285 1.618584775 1.378925156 1.633662829 2.465535329 1 15.55992902 -5.253573924 24.99893131 1.627755708 2.330005693 0.243507016 0.591492772 903.3052863 2870985.853 0.15763228 0.26691167 5.58E-06 5.253573924 0.702249985 RHSS(ph)ETFSSTPSATR ddPTM_HeLa_A485_30min_R1 1 RHSSETFSSTPSATR 15 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 RHS(0.288)S(0.711)ET(0.001)FSSTPSATR 86.997 0.00081532 348310000 45433 94169 64781 32835 82034 70263 90035 87111 56727 52420 TRUE FALSE FALSE 55539.41411 105181.2454 88746.18766 34628.69291 73866.40692 73941.86203 70798.28673 65746.89067 68111.58857 39352.65872 1.411325586 2.672786257 2.255151 0.879958154 1.877037266 1.878954674 1.799072516 1.67071026 1.730800174 1 15.26417349 -11.13311848 0.184907429 1.63E-10 2.034646988 0.231256249 0.444675959 59.86036014 1.54123153 27.86226895 1.557557669 7.36E-12 11.13311848 2.034646988 RHST(ph)S(ph)PSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 RHSTSPSPSR 10 1 O15042-2;O15042;E7ET15;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 3 0 RHS(0.556)T(0.722)S(0.722)PS(0.488)PS(0.512)R 92.039 0.0020759 281650000 309410 366220 218350 452130 213280 313120 345520 392530 346230 465230 TRUE FALSE FALSE 378237.187 409046.2433 299126.7513 476828.717 192045.0943 329514.479 271696.8294 296261.402 415715.1852 349256.7229 1.082977541 1.17119075 0.856466695 1.365267111 0.549867996 0.943473547 0.777928703 0.84826256 1.19028542 1 18.41392836 -5.75150136 24.99999578 0.874955947 1.103954448 0.259840996 0.192371495 292.2781487 735248.6855 0.055069453 0.07023138 1.77E-06 5.75150136 0.228998501 RHSVSEMTS(ph)CPEPQGFSDPPGQGPTGTFR ddPTM_HeLa_A485_30min_R1 1 RHSVSEMTSCPEPQGFSDPPGQGPTGTFR 29 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 0 RHS(0.162)VS(0.21)EMT(0.273)S(0.356)CPEPQGFSDPPGQGPTGTFR 92.822 0.0011536 236570000 35599 45146 48877 39340 41888 32793 43243 41531 31625 57058 TRUE FALSE FALSE 43517.87473 50425.43198 66958.63624 41489.04459 37717.48364 34509.99077 34003.77979 31345.45713 37971.84742 42834.49067 1.015954061 1.177215631 1.563194407 0.968589656 0.880540029 0.80565895 0.793841114 0.731780783 0.886478322 1 15.38648531 -5.483928125 8.166574164 0.839346724 1.24901508 0.614648069 0.14238184 0.199635844 38.4042052 0.04114068 0.060194074 3.28E-06 5.483928125 0.409668357 RHT(ph)MDKDSR ddPTM_HeLa_A486_30min_R1 1 RHTMDKDSR 9 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 RHT(1)MDKDSR 64.55 0.022026 13453000 48398 26348 21863 12269 26661 57950 35852 34824 48316 48831 TRUE FALSE FALSE 45005.55013 24260.08852 30328.93911 28562.85204 23316.92878 50800.71819 26881.4504 26895.3354 52504.06978 36603.39976 1.229545627 0.662782383 0.828582572 0.780333309 0.637015385 1.387868846 0.73439764 0.734776976 1.434404184 1 15.15969003 -6.207985189 24.99983363 1.021472915 0.815915453 0.152454066 0.26415866 702.0003187 328316.2725 0.085522988 0.085522907 6.19E-07 6.207985189 -0.205557462 RHVTLPS(ph)SPR ddPTM_HeLa_A485_30min_R1 2 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RHVTLPS(0.653)S(0.347)PR;RHVTLPS(0.691)S(0.309)PR ; 120.53 0.00014348 2129730000 398330 698610 589540 282190 643640 511320 599290 714080 475040 446430 TRUE FALSE FALSE 486937.1343 780306.3624 807635.3788 297605.3252 579556.9416 538091.9245 471246.7958 538950.7604 570376.1707 335143.2169 1.452922541 2.328277354 2.409821646 0.887994476 1.729281431 1.605558154 1.406105724 1.608120747 1.701887855 1 18.35441821 -4.691303527 0.059446187 1.32E-13 3.693711478 0.226690267 0.406600969 223.3402071 2.425721096 50.66151614 106.125424 2.04E-05 4.691303527 3.693711478 RHVTLPS(ph)SPR ddPTM_HeLa_A486_30min_R1 3 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RHVTLPS(0.682)S(0.318)PR;RHVTLPS(0.655)S(0.345)PR;RHVTLPS(0.593)S(0.407)PR ;; 83.617 0.0031379 1482730000 670420 618420 558960 63110 653080 476000 537200 584610 524190 459820 TRUE FALSE FALSE 623427.0201 569414.147 775404.2815 146923.2694 571164.6167 417275.9596 402786.8781 451507.0649 569627.2113 344678.0791 1.808722567 1.652017292 2.249647798 0.426262296 1.657095857 1.210625174 1.168588612 1.309938439 1.652635447 1 18.39489002 -5.232766153 24.99929621 1.234236676 1.878317975 0.446211066 0.355822555 697.4232626 608060.9458 0.092370303 0.159954551 5.85E-06 5.232766153 0.644081298 RHVTLPSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RHVTLPS(0.04)S(0.96)PR;RHVTLPS(0.01)S(0.99)PR ; 119.52 0.00017181 2063120000 632760 1165040 1000690 445390 1154800 935680 1021650 1288740 841380 785420 TRUE FALSE FALSE 773515.279 1301281.293 1370886.873 469720.5279 1039824.057 984670.758 803366.1314 972674.4943 1010237.248 589629.2486 1.311867213 2.206948344 2.324998084 0.796637089 1.76352184 1.669982892 1.362493691 1.649637457 1.713343174 1 19.16944857 -11.72571973 0.156644581 1.19E-12 1.874599646 0.175114729 0.414392204 105.0049375 1.87221782 39.68304883 2.175657573 1.88E-12 11.72571973 1.874599646 RHVTLPSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RHVTLPS(0.189)S(0.81)PR;RHVTLPS(0.202)S(0.798)PR;RHVTLPS(0.453)S(0.547)PR ;; 123.28 7.49E-05 1945420000 1074390 986600 888840 87159 1068720 765810 902950 894930 853640 715710 TRUE FALSE FALSE 999080.8092 908418.2229 1233022.652 202910.5568 934671.1722 671332.1484 677022.3596 691173.9752 927634.2025 536491.5575 1.862248893 1.693257257 2.298307652 0.378217614 1.742191763 1.251337768 1.261944107 1.288322184 1.729075117 1 19.03319594 -5.223861986 24.99051242 1.270710226 1.925469794 0.415055496 0.387286911 580.1722751 385837.7151 0.099969471 0.173147351 5.97E-06 5.223861986 0.654759567 RHYNGEAYEDDEHHPR ddPTM_HeLa_A485_30min_R1 1 RHYNGEAYEDDEHHPR 16 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 85.493 0.0036846 134200000 22223 28528 16767 9356.7 15126 8262.3 7970.6 26729 10513 16021 FALSE FALSE TRUE 27166.42968 31864.10144 22969.81103 9867.832829 13620.00233 8694.901252 6267.616196 20173.67084 12622.86267 12027.25954 2.258738126 2.649323507 1.909812534 0.820455632 1.132427739 0.722932869 0.521117564 1.677328968 1.0495211 1 13.55402034 -5.080833708 3.422030847 0.994081784 2.440564291 0.798198455 0.303002437 0.103770385 2.319954987 0.087751942 0.172526282 8.30E-06 5.080833708 1.446482507 up RIDFIPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 7 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 2 0 RIDFIPVS(1)PAPS(0.874)PT(0.127)R;RIDFIPVS(1)PAPS(0.982)PT(0.018)R;RIDFIPVS(1)PAPS(0.98)PT(0.02)R;RIDFIPVS(1)PAPS(0.635)PT(0.366)R;RIDFIPVS(1)PAPS(0.978)PT(0.022)R;RIDFIPVS(1)PAPS(0.974)PT(0.026)R;RIDFIPVS(1)PAPS(0.971)PT(0.029)R ;;;;;; 115.39 6.75E-05 2230836000 781078 1198793 1248353 846055 1372698 1144108 1331306 1453782 1098567 1034269 TRUE FALSE FALSE 954826.1064 1338981.413 1710170.723 892272.8423 1236027.367 1204011.726 1046861.597 1097239.685 1319039.32 776444.7726 1.229741174 1.724503095 2.202565827 1.149177474 1.591906354 1.550672718 1.348275672 1.413158699 1.698819242 1 19.56652379 -11.9716347 0.226811832 1.26E-09 1.63144083 0.239432305 0.285325162 81.84455622 1.863793635 40.21704052 0.547801993 1.07E-12 11.9716347 1.631440828 RIDFIPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 10 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 2 0 RIDFIPVS(1)PAPS(0.978)PT(0.022)R;RIDFIPVS(1)PAPS(0.889)PT(0.111)R;RIDFIPVS(1)PAPS(0.975)PT(0.025)R;RIDFIPVS(1)PAPS(0.972)PT(0.028)R;RIDFIPVS(1)PAPS(0.647)PT(0.353)R;RIDFIPVS(1)PAPS(0.944)PT(0.056)R;RIDFIPVS(1)PAPS(0.956)PT(0.044)R;RIDFIPVS(1)PAPS(0.987)PT(0.013)R;RIDFIPVS(0.997)PAPS(0.569)PT(0.434)R;RIDFIPVS(1)PAPS(0.979)PT(0.021)R ;;;;;;;;; 163.18 2.98E-12 1819341000 1481605 1630465 1469893 565660 1864741 1466131 1674097 1704702 1347333 1690821 TRUE FALSE FALSE 1377752.141 1501261.015 2039074.935 1316885.067 1630847.796 1285254.664 1255220.224 1316578.568 1464120.909 1267428.416 1.08704533 1.184493732 1.608828482 1.039021258 1.286737598 1.014064895 0.990367746 1.03877943 1.155190219 1 20.27347284 -6.263880266 24.84588726 1.039022121 1.247262374 0.312245865 0.149422234 254.3352565 2588880.187 0.051854892 0.047904145 5.45E-07 6.263880266 0.208240253 RIDFIPVS(ph)PAPSPTR ddPTM_HeLa_A485_30min_R1 1 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RIDFIPVS(1)PAPSPTR 96.718 0.00046781 147560000 70510 115360 97336 81109 94250 109240 129270 139010 94847 106980 TRUE FALSE FALSE 86194.70624 128850.3485 133344.6369 85539.77929 84866.13907 114959.6375 101650.4085 104917.5795 113881.9229 80311.85482 1.0732501 1.604375204 1.660335665 1.065095302 1.056707497 1.431415546 1.265696188 1.306377244 1.417996424 1 16.29332534 -10.4524417 2.815835089 0.990693303 1.324522065 0.180781138 0.204256319 29116214.62 31589203.04 2130402.745 0.052865223 3.53E-11 10.4524417 0.333828762 RIDFIPVS(ph)PAPSPTR ddPTM_HeLa_A486_30min_R1 2 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RIDFIPVS(1)PAPSPTR;RIDFIPVS(1)PAPSPTR ; 95.206 0.00052187 228611000 37632 45000 39914 12468 46527 35267 38807 42476 33715 43342 TRUE FALSE FALSE 34994.19113 41434.03611 55369.76973 29026.1341 40691.14981 30916.11611 29097.07814 32805.14204 36637.44335 32488.88109 1.077112845 1.275329735 1.704268287 0.893417475 1.252463872 0.951590669 0.895601115 1.009734437 1.127691755 1 14.98765844 -5.292816935 24.98702353 1.020870329 1.344546488 0.431152369 0.175514639 623.9462673 496868.4172 0.049880695 0.073993249 5.10E-06 5.292816935 0.323676158 RIDFIPVSPAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RIDFIPVSPAPS(0.975)PT(0.025)R;RIDFIPVSPAPS(0.971)PT(0.029)R;RIDFIPVSPAPS(0.973)PT(0.027)R ;; 170.38 1.96E-12 1584720000 578590 869990 900480 522260 856460 721370 787310 843160 657990 606920 TRUE FALSE FALSE 707295.3494 971727.7626 1233605.024 550789.7414 771187.8352 759139.8177 619094.7868 636373.688 790042.5576 455626.0135 1.552359454 2.132731086 2.707494716 1.208863684 1.692589563 1.666146785 1.358778402 1.396701832 1.733971578 1 18.79749059 -5.27946776 24.99717927 1.470223834 2.131048762 0.470074904 0.336424552 711.9118805 987096.9945 0.093993744 0.139732478 5.25E-06 5.27946776 0.660824929 RIDFIPVSPAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RIDFIPVSPAPS(0.993)PT(0.007)R;RIDFIPVS(0.002)PAPS(0.963)PT(0.034)R ; 155.86 1.33E-08 949820000 505120 514520 444690 158381 526710 419640 438020 433220 373350 491980 TRUE FALSE FALSE 469713.6964 473747.5614 616885.8772 368718.9721 460645.1204 367869.0834 328422.7631 334585.2631 405712.2786 368785.0057 1.273678943 1.2846172 1.672752058 0.999820943 1.249088529 0.997516379 0.890553461 0.907263739 1.100132251 1 18.49242047 -5.769442674 1.368183409 0.971351644 1.380077976 0.533839635 0.154487761 0.319337213 1.250609707 0.059580643 0.083006381 1.70E-06 5.769442674 0.408726332 RIDFTPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 6 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 RIDFT(0.001)PVS(0.999)PAPS(0.992)PT(0.008)R;RIDFT(0.005)PVS(0.995)PAPS(0.958)PT(0.042)R;RIDFT(0.114)PVS(0.886)PAPS(0.65)PT(0.35)R;RIDFT(0.009)PVS(0.991)PAPS(0.684)PT(0.316)R;RIDFT(0.004)PVS(0.996)PAPS(0.969)PT(0.031)R;RIDFT(0.018)PVS(0.982)PAPS(0.991)PT(0.009)R ;;;;; 176.28 4.20E-13 6801780000 2327259 3194910 3399450 2739670 4114060 3113990 3884040 3894680 3213040 3281740 TRUE FALSE FALSE 2844949.736 3568526.932 4657048.018 2889331.235 3704449.741 3277033.701 3054183.124 2939503.623 3857867.656 2463662.614 1.154764341 1.448464133 1.890294552 1.17277878 1.503635165 1.330147108 1.239692118 1.193143739 1.565907456 1 21.23237327 -6.462580661 4.310152944 1.267038507 1.445146237 0.122850516 0.229605577 0.514735978 19.23299893 0.08484307 0.072014323 3.45E-07 6.462580661 0.178107731 RIDFTPVS(ph)PAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 5 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 RIDFT(0.002)PVS(0.998)PAPS(0.995)PT(0.005)R;RIDFT(0.004)PVS(0.996)PAPS(0.968)PT(0.032)R;RIDFT(0.002)PVS(0.998)PAPS(0.843)PT(0.157)R;RIDFT(0.004)PVS(0.996)PAPS(0.997)PT(0.003)R;RIDFTPVS(1)PAPS(0.996)PT(0.004)R ;;;; 127.49 1.04E-05 8953718000 2893458 3257582 3051646 970203 3571641 2845088 3123962 3256790 2676493 3053283 TRUE FALSE FALSE 2690641.536 2999439.338 4233325.057 2258681.615 3123652.482 2494089.969 2342313.666 2515290.012 2908493.568 2288721.063 1.175609199 1.310530753 1.849646567 0.986875007 1.36480261 1.089730859 1.023415961 1.098993692 1.270794251 1 21.12611022 -5.314646987 24.99999808 1.128365837 1.431792774 0.368262547 0.19519025 355.5978229 167079.5698 0.054860827 0.081371823 4.85E-06 5.314646987 0.303426937 RIDFTPVS(ph)PAPS(ph)PTRGFGK ddPTM_HeLa_A485_30min_R1 1 RIDFTPVSPAPSPTRGFGK 19 2 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 RIDFT(0.044)PVS(0.956)PAPS(0.853)PT(0.147)RGFGK 77.641 0.012038 161710000 88287 257810 158220 54006 259550 300020 331680 785810 155130 113710 TRUE FALSE FALSE 107926.1386 287958.6369 216752.1621 56956.21103 233708.2907 315728.5833 260813.8584 593088.8654 186263.1681 85364.18968 1.264302267 3.373295499 2.53914625 0.667214335 2.737779056 3.698606927 3.055307611 6.947747851 2.181982501 1 16.38134336 -6.121503044 3.88036872 3.726415268 2.066518699 0.12816469 1.589455137 0.405883405 10.68732818 0.527511598 0.532511475 7.56E-07 6.121503044 -1.659896569 RIDFTPVS(ph)PAPSPTR ddPTM_HeLa_A485_30min_R1 2 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFT(0.001)PVS(0.999)PAPSPTR;RIDFT(0.002)PVS(0.998)PAPSPTR ; 119.62 4.94E-05 746900000 324950 623400 639840 259040 631090 498230 472620 655920 561920 367270 TRUE FALSE FALSE 397234.0064 696301.2071 876543.442 273190.6993 568256.4637 524316.5524 371640.876 495054.5916 674692.1898 275716.3481 1.440734324 2.525425902 3.179149325 0.990839684 2.061018389 1.901652028 1.347910193 1.795521357 2.447051814 1 18.07282529 -5.265255266 24.99987549 1.697420126 2.396135433 0.246380883 0.582744584 482.0328412 3158054.837 0.161057339 0.24949685 5.43E-06 5.265255266 0.698715307 RIDFTPVS(ph)PAPSPTR ddPTM_HeLa_A486_30min_R1 2 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFT(0.002)PVS(0.998)PAPSPTR;RIDFT(0.008)PVS(0.992)PAPSPTR ; 106.05 0.00017729 723900000 238248 279508 272029 79071 325154 224668 241414 278570 222017 259029 TRUE FALSE FALSE 221548.0455 257358.7681 377365.914 184081.284 284370.1534 196950.7464 181009.6638 215145.6921 241261.6123 194166.4524 1.141021236 1.325454346 1.943517582 0.948059161 1.46456893 1.014339727 0.93223964 1.108047706 1.242550447 1 17.56693443 -5.974933796 1.509924803 1.064371126 1.410130783 0.233530616 0.25681683 0.574698688 2.687673283 0.103038578 0.117328151 1.06E-06 5.974933796 0.345759656 RIDFTPVSPAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFTPVS(0.002)PAPS(0.764)PT(0.233)R 75.224 0.0041875 209320000 54027 70871 66695 59838 80560 63337 77239 74240 54820 80396 TRUE FALSE FALSE 66045.11976 79158.74695 91368.25591 63106.79842 72539.16354 66653.22738 60736.25667 56032.5236 65821.87116 60354.75678 1.09428193 1.311557716 1.513853436 1.045597759 1.201879809 1.104357485 1.006320958 0.928386205 1.090582991 1 15.88117986 -6.077337843 1.104698052 1.000393552 1.285057736 0.44697269 0.121952609 0.445399083 1.147403565 0.061136591 0.065841394 8.37E-07 6.077337843 0.284664184 RIDFTPVSPAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFTPVS(0.001)PAPS(0.957)PT(0.042)R 83.905 0.0014792 547790000 123420 143760 112810 68687 150820 131830 139590 124470 98911 180740 TRUE FALSE FALSE 114768.8953 132367.934 156493.0532 159906.8072 131902.7493 115566.1549 104663.1056 96130.89816 107484.6851 135481.5276 0.847118403 0.977018317 1.155087752 1.180284944 0.973584751 0.85300304 0.77252676 0.709549854 0.793353065 1 17.04773663 -6.248421559 2.909182007 0.797888559 1.045620418 0.446460664 0.112104066 0.235824311 4.027714848 0.04328829 0.04057896 5.64E-07 6.248421559 0.247731859 RIDIS(ph)PSTFR ddPTM_HeLa_A485_30min_R1 8 RIDISPSTFR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 RIDIS(0.999)PS(0.001)TFR;RIDIS(0.974)PS(0.024)T(0.002)FR;RIDIS(0.402)PS(0.299)T(0.299)FR;RIDIS(0.997)PS(0.002)T(0.001)FR;RIDIS(0.986)PS(0.011)T(0.003)FR;RIDIS(0.93)PS(0.035)T(0.035)FR;RIDIS(0.985)PS(0.014)T(0.001)FR;RIDIS(0.884)PS(0.108)T(0.008)FR ;;;;;;; 145.81 3.41E-06 75798950000 958907 1357870 1433037 973341 1563598 1291250 1375672 1482931 1159371 1228798 TRUE FALSE FALSE 1172212.554 1516661.085 1963177.02 1026512.154 1407920.693 1358857.853 1081748.439 1119239.847 1392046.125 922481.273 1.270716911 1.644110432 2.128148373 1.112772892 1.526232276 1.473046547 1.172650839 1.213292757 1.509023723 1 19.8151601 -6.131027488 0.896014517 1.236651463 1.621445027 0.221896731 0.27451044 0.919345455 1.605923937 0.162990989 0.173040452 7.40E-07 6.131027488 0.384793564 RIDIS(ph)PSTFR ddPTM_HeLa_A486_30min_R1 11 RIDISPSTFR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 RIDIS(0.8)PS(0.19)T(0.011)FR;RIDIS(0.998)PS(0.002)TFR;RIDIS(0.979)PS(0.019)T(0.002)FR;RIDIS(0.973)PS(0.025)T(0.001)FR;RIDIS(0.976)PS(0.023)T(0.001)FR;RIDIS(0.752)PS(0.196)T(0.051)FR;RIDIS(0.998)PS(0.001)T(0.002)FR;RIDIS(0.988)PS(0.005)T(0.007)FR;RIDIS(0.998)PS(0.001)T(0.001)FR;RIDIS(0.997)PS(0.003)TFR;RIDIS(0.993)PS(0.002)T(0.004)FR ;;;;;;;;;; 152.32 1.82E-06 77535650000 768995 777740 782604 251767 1003259 617531 752878 680847 606970 676512 TRUE FALSE FALSE 715092.4216 716109.0499 1085649.228 586126.2996 877420.9012 541346.3038 564499.9613 525833.0009 659582.6483 507108.9918 1.410135559 1.412140312 2.140859746 1.155819181 1.73024126 1.067514701 1.113172849 1.036923047 1.300672358 1 18.95193633 -6.270813169 24.86252205 1.106559021 1.569800413 0.463422989 0.250805162 574.0075947 1522461.773 0.085400576 0.07631699 5.36E-07 6.270813169 0.463241391 RIDIS(ph)PSTFRK ddPTM_HeLa_A485_30min_R1 3 RIDISPSTFRK 11 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 RIDIS(0.981)PS(0.018)T(0.001)FRK;RIDIS(0.913)PS(0.072)T(0.014)FRK;RIDIS(0.983)PS(0.013)T(0.004)FRK ;; 116.58 0.00013941 19197025000 1072220 1702750 1305620 873549 1767580 1910920 2131420 2937250 1152426 1172790 TRUE FALSE FALSE 1310731.64 1901871.801 1788623.169 921268.7699 1591593.529 2010972.816 1676024.705 2216884.832 1383707.328 880435.0366 1.488731803 2.160150064 2.031522026 1.046379042 1.807735338 2.284067231 1.903632449 2.51794254 1.571617746 1 19.74785703 -6.006689851 24.97505758 1.963619876 1.70163352 0.003388204 0.478491063 972.535295 3630757.626 0.147726504 0.161524956 9.85E-07 6.006689851 -0.261986356 RIDIS(ph)PSTFRK ddPTM_HeLa_A486_30min_R1 4 RIDISPSTFRK 11 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 RIDIS(0.966)PS(0.028)T(0.006)FRK;RIDIS(0.992)PS(0.006)T(0.002)FRK;RIDIS(0.997)PS(0.001)T(0.002)FRK;RIDIS(1)PSTFRK ;;; 139.86 3.15E-06 10871650000 1159690 1038970 954940 405906 1497770 919510 1233560 1296060 740841 1248860 TRUE FALSE FALSE 1078401.72 956638.2333 1324718.342 944969.6814 1309905.72 806070.2051 924910.2407 1000975.431 805057.6944 936137.3273 1.151969576 1.021899464 1.415089756 1.009434891 1.399266627 0.861059784 0.988007009 1.069261316 0.859978201 1 19.83636066 -6.279082021 24.99474655 0.962011704 1.191078075 0.436921854 0.138163797 821.12595 1163304.769 0.046123623 0.040770902 5.26E-07 6.279082021 0.229066371 RIDIS(ph)PSTLR ddPTM_HeLa_A485_30min_R1 11 RIDISPSTLR 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 RIDIS(0.953)PS(0.014)T(0.033)LR;RIDIS(0.997)PS(0.002)T(0.001)LR;RIDIS(0.772)PS(0.072)T(0.156)LR;RIDIS(0.999)PS(0.001)TLR;RIDIS(0.924)PS(0.054)T(0.023)LR;RIDIS(0.973)PS(0.025)T(0.002)LR;RIDIS(0.942)PS(0.056)T(0.001)LR;RIDIS(0.964)PS(0.034)T(0.003)LR;RIDIS(0.998)PS(0.001)T(0.001)LR;RIDIS(0.951)PS(0.036)T(0.013)LR;RIDIS(0.987)PS(0.009)T(0.005)LR ;;;;;;;;;; 138.02 1.72E-05 85756660000 1010543 1469620 1491580 982319 1559513 1386038 1435113 1661083 1246288 1300887 TRUE FALSE FALSE 1235334.804 1641479.275 2043377.512 1035980.6 1404242.41 1458608.806 1128489.384 1253699.79 1496406.57 976599.812 1.264934509 1.680810558 2.092338629 1.060803603 1.43788929 1.493558353 1.155528979 1.283739536 1.532261784 1 19.89740797 -5.278447315 24.99764352 1.302585878 1.679506232 0.347126314 0.249364893 929.70264 1366440.933 0.069982363 0.104104982 5.27E-06 5.278447315 0.376920354 RIDIS(ph)PSTLR ddPTM_HeLa_A486_30min_R1 9 RIDISPSTLR 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 RIDIS(0.993)PS(0.005)T(0.001)LR;RIDIS(1)PSTLR;RIDIS(0.956)PS(0.035)T(0.009)LR;RIDIS(0.971)PS(0.029)T(0.001)LR;RIDIS(0.748)PS(0.189)T(0.063)LR;RIDIS(0.884)PS(0.058)T(0.058)LR;RIDIS(0.953)PS(0.036)T(0.011)LR;RIDIS(0.99)PS(0.009)TLR;RIDIS(0.97)PS(0.024)T(0.006)LR ;;;;;;;; 142.85 3.62E-06 1.19E+11 1660159 1752697 1658899 492425 1985365 1598007 1676482 1692768 1388425 1734067 TRUE FALSE FALSE 1543790.427 1613806.907 2301269.12 1146390.286 1736342.009 1400861.144 1257008.472 1307361.679 1508774.797 1299845.336 1.187672398 1.241537636 1.770417645 0.881943608 1.335806623 1.077713713 0.967044645 1.00578249 1.160734093 1 20.30990854 -5.287305953 24.99770884 1.069725969 1.384042257 0.411821364 0.184947599 759.7238152 734202.7237 0.051926011 0.077047793 5.16E-06 5.287305953 0.314316288 RIDIS(ph)PSTLRK ddPTM_HeLa_A485_30min_R1 4 RIDISPSTLRK 11 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 RIDIS(0.991)PS(0.008)T(0.001)LRK;RIDIS(0.996)PS(0.004)TLRK;RIDIS(0.997)PS(0.002)TLRK;RIDIS(0.851)PS(0.075)T(0.075)LRK ;;; 106.32 0.00031399 19622940000 998370 1482290 1151680 818870 1589300 1620220 1933090 2434670 1073990 1193410 TRUE FALSE FALSE 1220453.962 1655630.921 1577734.357 863602.7946 1431063.712 1705052.214 1520069.53 1837563.365 1289529.942 895914.8501 1.362243256 1.847977987 1.761031595 0.963934011 1.59732112 1.903140922 1.696667411 2.051046888 1.43934431 1 19.7730021 -5.999882929 24.99999995 1.695487524 1.498489139 0.008620271 0.348459345 12.95774857 2765845.853 0.107186615 0.120339295 1.00E-06 5.999882929 -0.196998385 RIDIS(ph)PSTLRK ddPTM_HeLa_A486_30min_R1 4 RIDISPSTLRK 11 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 RIDIS(0.793)PS(0.17)T(0.037)LRK;RIDIS(0.973)PS(0.023)T(0.004)LRK;RIDIS(0.898)PS(0.021)T(0.08)LRK;RIDIS(0.772)PS(0.199)T(0.029)LRK ;;; 113.25 0.00019609 20685580000 2874260 2500210 2092960 995910 3254180 2311030 3010230 3178920 1886100 3228970 TRUE FALSE FALSE 2672789.217 2302084.254 2903410.163 2318528.811 2846010.4 2025918.615 2257038.615 2455149.311 2049588.667 2420414.895 1.104269033 0.951111423 1.19955061 0.957905529 1.175835765 0.837012952 0.932500713 1.014350604 0.846792288 1 21.20682294 -6.264992408 24.99978972 0.927426314 1.070810257 0.407092422 0.091282076 326.5047011 2297341.387 0.029580468 0.027125074 5.43E-07 6.264992408 0.143383943 RIDISPSTLR ddPTM_HeLa_A486_30min_R1 2 RIDISPSTLR 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 0 ; ; 120.54 0.00013339 0 132079 148274 179780 31288 169455 122330 119532 128538 128948 119261 FALSE FALSE TRUE 122820.9442 136524.2282 249395.6307 72840.04521 148200.3738 107238.1684 89623.82932 99272.70336 140125.3165 89397.26934 1.373878029 1.527163293 2.789745509 0.814790494 1.657772937 1.199568725 1.002534305 1.110466842 1.567445152 1 16.44794314 -5.301907826 24.99941521 1.209503302 1.859954753 0.365745218 0.423442335 565.6882676 349453.2162 0.118168938 0.175275047 4.99E-06 5.301907826 0.650451451 RIDS(ph)VYLDPLVFR ddPTM_HeLa_A485_30min_R1 1 RIDSVYLDPLVFR 13 1 O60443-3;O60443;H7BZJ0;H7C147;C9JSR4 O60443-3 DFNA5 Non-syndromic hearing impairment protein 5 1 0 RIDS(1)VYLDPLVFR 95.767 0.00067731 13672000 5163.1 8505.5 7049.1 5366.8 7934.3 6570.9 9808.1 9421.9 5124.3 8661.8 TRUE FALSE FALSE 6311.613783 9500.144237 9656.855428 5659.974695 7144.333233 6914.942163 7712.51931 7111.164252 6152.700007 6502.572669 0.970633333 1.460982402 1.485082277 0.870420829 1.098693332 1.063416361 1.186071991 1.093592431 0.946194733 1 12.6667949 -5.259341117 24.99997668 1.050705966 1.321107639 0.385913171 0.154242957 193.9261161 2310538.607 0.042449337 0.069127039 5.50E-06 5.259341117 0.270401673 RIDS(ph)VYLDPLVFR ddPTM_HeLa_A486_30min_R1 1 RIDSVYLDPLVFR 13 1 O60443-3;O60443;H7BZJ0;H7C147;C9JSR4 O60443-3 DFNA5 Non-syndromic hearing impairment protein 5 1 0 RIDS(1)VYLDPLVFR 60.209 0.014191 0 8746.5 6943.9 7592.8 5149.1 9988.2 7839.3 11854 10648 7623.3 11456 TRUE FALSE FALSE 8133.415517 6393.640075 10532.9355 11987.36502 8735.38682 6872.16687 8888.003821 8223.682844 8284.093782 8587.343034 0.947139934 0.744542293 1.226565127 1.395934106 1.017239766 0.800266956 1.035012085 0.957651606 0.964686487 1 13.06799611 -6.000648231 24.99768699 0.949056752 1.08292657 0.112017588 0.16851937 59.742555 2304024.846 0.058217722 0.065241955 9.99E-07 6.000648231 0.133869818 RIDT(ph)PSLEEPSDLEELEQFAK ddPTM_HeLa_A485_30min_R1 5 RIDTPSLEEPSDLEELEQFAK 21 1 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88 P14859-6 POU2F1 "POU domain, class 2, transcription factor 1;POU domain protein" 1 0 RIDT(0.998)PS(0.002)LEEPSDLEELEQFAK;RIDT(0.716)PS(0.284)LEEPSDLEELEQFAK;RIDT(0.997)PS(0.003)LEEPSDLEELEQFAK;RIDT(0.987)PS(0.013)LEEPSDLEELEQFAK;RIDT(0.956)PS(0.044)LEEPSDLEELEQFAK ;;;; 268.68 1.16E-59 805079000 401395 433359 372267 398034 514556 455072 579310 662127 381700 590537 TRUE FALSE FALSE 490683.933 484036.5653 509984.0546 419777.5895 463324.9979 478898.8662 455535.686 499739.3151 458303.6888 443326.9939 1.106821691 1.091827414 1.150356422 0.946880283 1.045108925 1.080238453 1.027538797 1.127247657 1.033782502 1 18.75801168 -5.214385829 24.99778858 1.044271621 1.113884394 0.368525456 0.046777151 507.4167914 269570.7437 0.012751628 0.022086346 6.10E-06 5.214385829 0.069612773 RIDT(ph)PSLEEPSDLEELEQFAK ddPTM_HeLa_A486_30min_R1 4 RIDTPSLEEPSDLEELEQFAK 21 1 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88 P14859-6 POU2F1 "POU domain, class 2, transcription factor 1;POU domain protein" 1 0 RIDT(0.993)PS(0.007)LEEPSDLEELEQFAK;RIDT(0.996)PS(0.004)LEEPSDLEELEQFAK;RIDT(0.954)PS(0.046)LEEPSDLEELEQFAK;RIDT(0.974)PS(0.026)LEEPSDLEELEQFAK ;;; 221.26 1.26E-35 709249000 193893 192585 132067 72823 216345 190054 213684 219536 134597 225333 TRUE FALSE FALSE 180302.102 177323.8632 183206.8793 169535.6243 189208.9928 166607.0698 160218.0031 169552.4452 146263.9763 168908.1501 1.067456495 1.049824198 1.084653873 1.003714884 1.120188651 0.986376736 0.94855105 1.00381447 0.865937945 1 17.36587942 -6.457736442 5.911076023 0.956346865 1.061809403 0.583467742 0.044608986 0.157146992 10.72027017 0.015005767 0.013037043 3.49E-07 6.457736442 0.105462538 RIEQHYFEDR ddPTM_HeLa_A486_30min_R1 1 RIEQHYFEDR 10 1 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 0 116.74 0.00057802 161340000 86330 105980 95186 23828 108610 92626 97838 99299 74499 95212 FALSE FALSE TRUE 80278.71281 97581.75883 132044.5684 55472.7882 94987.12105 81198.74587 73357.89758 76690.78538 80956.6333 71370.29547 1.124819678 1.367260121 1.850133413 0.777253167 1.330905532 1.137710659 1.027849151 1.074547679 1.134318315 1 16.12303612 -5.271904139 24.99852951 1.084115288 1.439389996 0.402595915 0.210633073 723.5315523 1728392.176 0.058740614 0.088201737 5.35E-06 5.271904139 0.355274708 RIES(ph)PLKHQHR ddPTM_HeLa_A485_30min_R1 1 RIESPLKHQHR 11 2 E9PQ57;P78406 E9PQ57 RAE1 mRNA export factor 1 0 RIES(1)PLKHQHR 85.457 0.0014206 36674000 17560 25845 27336 13685 28185 27780 31167 46494 23538 20211 TRUE FALSE FALSE 21466.16142 28867.34793 37448.72395 14432.5769 25378.80244 29234.51784 24507.91584 35091.2736 28261.8607 15172.76966 1.414782001 1.902576035 2.468153461 0.951215712 1.672654566 1.926775303 1.615256568 2.312779697 1.862669858 1 13.88919684 -5.220138902 24.99996039 1.689645208 1.925910488 0.074603238 0.453541715 1781.494338 1078370.057 0.124185365 0.21509363 6.02E-06 5.220138902 0.23626528 RILS(ph)DVTHSAVFGVPASK ddPTM_HeLa_A485_30min_R1 2 RILSDVTHSAVFGVPASK 18 1 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 RILS(0.851)DVT(0.129)HS(0.02)AVFGVPASK;RILS(0.818)DVT(0.153)HS(0.029)AVFGVPASK ; 145.62 4.00E-08 563500000 541740 920540 651060 476990 945250 942430 1134900 1605890 664720 675500 TRUE FALSE FALSE 662248.194 1028189.145 891914.1869 503046.7559 851137.591 991774.1775 892419.3437 1212042.96 798123.2068 507110.2817 1.305925393 2.027545452 1.758817005 0.991986899 1.678407285 1.955736678 1.759813153 2.390097388 1.573865164 1 18.95194 -6.001371603 24.99923355 1.823477346 1.544348853 0.035433252 0.415264991 136.7818471 2493106.644 0.127549168 0.142717705 9.97E-07 6.001371603 -0.279128493 RILS(ph)DVTHSAVFGVPASK ddPTM_HeLa_A486_30min_R1 2 RILSDVTHSAVFGVPASK 18 1 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 RILS(0.767)DVT(0.117)HS(0.117)AVFGVPASK;RILS(0.833)DVT(0.147)HS(0.02)AVFGVPASK ; 145.62 4.00E-08 392450000 637400 615280 525830 244470 897870 602210 797550 830620 489690 712930 TRUE FALSE FALSE 592721.5515 566522.972 729445.4582 569138.5148 785250.7723 527915.453 597994.5544 641505.9583 532136.7235 534407.6876 1.109118685 1.060095102 1.364960638 1.064989386 1.469385247 0.987851532 1.118985689 1.200405558 0.995750503 1 19.02758124 RILVATNLFGR ddPTM_HeLa_A485_30min_R1 2 RILVATNLFGR 11 1 O00148;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 253.79 4.75E-36 237620000 114273 201652 186512 87853 205115 172125 212950 257600 136750 144711 FALSE FALSE TRUE 139692.6346 225233.4473 255510.5502 92652.18693 184693.0304 181137.1988 167451.4929 194423.1961 164194.4707 108637.2109 1.285863595 2.073262424 2.351961617 0.852858667 1.700089949 1.667358701 1.541382473 1.78965563 1.51140175 1 16.72915882 -11.57593211 0.269623177 8.61E-13 1.72246569 0.201687911 0.385651628 78.81579034 2.460292862 47.03075802 0.510301503 2.66E-12 11.57593211 1.72246569 RILVATNLFGR ddPTM_HeLa_A486_30min_R1 2 RILVATNLFGR 11 1 O00148;Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 O00148;Q13838-2 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B 0 0 ; ; 241.35 1.01E-27 201258000 184626 160698 165065 56083 222370 143501 181068 189387 117644 172041 FALSE FALSE TRUE 171684.6708 147963.7052 228982.5886 130564.0583 194478.2811 125797.3056 135762.8713 146267.7144 127841.4766 128960.8138 1.331293327 1.147353997 1.775598198 1.012432028 1.508041671 0.975469229 1.05274515 1.134202787 0.991320331 1 16.97657323 -6.272695062 24.73701307 1.040510014 1.34775233 0.408863501 0.194636564 673.4745917 1480114.697 0.064967062 0.057804436 5.34E-07 6.272695062 0.307242316 RINPPSSGGTSS(ph)SPIK ddPTM_HeLa_A485_30min_R1 2 RINPPSSGGTSSSPIK 16 1 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88;A0A0A0MT46 P14859-6 POU2F1 "POU domain, class 2, transcription factor 1;POU domain protein" 1 0 RINPPSSGGTS(0.012)S(0.595)S(0.393)PIK;RINPPSSGGTS(0.012)S(0.66)S(0.328)PIK ; 118.46 5.05E-05 1375830000 610990 706650 570980 653110 706500 724130 936760 893420 578490 842780 TRUE FALSE FALSE 746902.6176 789286.5705 782209.2625 688787.7455 636158.3793 762044.3271 736613.5734 674307.3442 694587.6368 632690.4562 1.18051823 1.24750826 1.236322209 1.088664668 1.005481232 1.204450485 1.164255863 1.065777645 1.097831696 1 19.27114031 -1.000000003 0.093100343 0.925007312 1.770151343 0.435555706 0.064473827 153.4511256 1.024948429 1.165387802 16.55433529 0.099999999 1.000000003 0.845144031 RINPPSSGGTSSS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 RINPPSSGGTSSSPIK 16 1 P14859-6;P14859-2;P14859;P14859-3;P14859-5;P14859-4;A0A0C4DG88;A0A0A0MT46 P14859-6 POU2F1 "POU domain, class 2, transcription factor 1;POU domain protein" 1 0 RINPPSSGGTS(0.009)S(0.246)S(0.745)PIK;RINPPSSGGTS(0.004)S(0.136)S(0.86)PIK ; 150.98 2.78E-08 1178780000 872660 768170 478080 296430 801400 752670 994770 883670 564680 1130850 TRUE FALSE FALSE 811491.0404 707297.4116 663205.3794 690104.0207 700880.9392 659813.228 745868.0244 682477.6314 613626.9171 847677.7994 0.957310715 0.834394167 0.782379083 0.814111236 0.826824697 0.778377384 0.879895669 0.805114434 0.723891693 1 19.69315648 -11.4666073 2.390225699 3.329042164 0.821411586 0.445487362 0.059406493 4088190.705 1009933.431 50436019.06 0.015032759 3.42E-12 11.4666073 -2.507630579 RIPHS(ph)PAR ddPTM_HeLa_A485_30min_R1 5 RIPHSPAR 8 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RIPHS(1)PAR;RIPHS(1)PAR;RIPHS(1)PAR;RIPHS(1)PAR;RIPHS(1)PAR ;;;; 109.39 0.00073663 4415480000 1206177 1894525 1667462 1153571 2028660 1720104 1788372 2046730 1408266 1533395 TRUE FALSE FALSE 1474486.912 2116073.219 2284325.583 1216587.663 1826679.487 1810165.986 1406271.713 1544766.258 1690892.069 1151147.847 1.280884047 1.838228882 1.984389398 1.056847447 1.586833084 1.572487836 1.221625629 1.341935585 1.468874805 1 20.13464171 -8.912148666 0.152697991 0.630784223 1.81178461 0.280529803 0.256953586 18.27924297 1.020849976 5.322591592 2.063540025 1.22E-09 8.912148666 1.181000387 RIPHS(ph)PAR ddPTM_HeLa_A486_30min_R1 5 RIPHSPAR 8 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RIPHS(1)PAR;RIPHS(1)PAR;RIPHS(1)PAR;RIPHS(1)PAR;RIPHS(1)PAR ;;;; 113.61 0.00062454 3388634000 1233584 1259077 1182888 397556.5 1465025 1034214 1301268 1265584 1046902 1162529 TRUE FALSE FALSE 1147116.132 1159303.153 1640933.912 925531.6234 1281267.904 906623.1918 975676.983 977438.1507 1137648.308 871424.1716 1.316369421 1.330354597 1.883048423 1.062090832 1.470314854 1.040392522 1.119634978 1.121656 1.30550465 1 19.73301561 -5.858050303 1.473885299 1.132783032 1.462095355 0.308740245 0.209711304 0.49215513 2.222105372 0.07965134 0.100558321 1.39E-06 5.858050303 0.329312323 RIPSIVS(ph)SPLNSPLDR ddPTM_HeLa_A485_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 RIPS(0.001)IVS(0.694)S(0.306)PLNSPLDR 86.625 0.00072937 158740000 92392 148480 134500 96752 156720 132310 145150 172910 121450 109880 TRUE FALSE FALSE 112944.2817 165843.4444 184257.147 102037.3168 141116.4065 139237.547 114137.5167 130503.5514 145823.901 82488.93819 1.369205182 2.01049314 2.233719467 1.236981819 1.710731276 1.687954168 1.383670577 1.582073357 1.767799467 1 16.33191305 -11.60188288 0.199252825 3.83E-10 1.814660264 0.324918203 0.285852587 56.03484417 1.310018758 25.70884993 0.779647793 2.50E-12 11.60188288 1.814660263 RIPSIVSS(ph)PLNS(ph)PLDR ddPTM_HeLa_A485_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 RIPS(0.001)IVS(0.218)S(0.781)PLNS(1)PLDR 99.93 0.0002301 151870000 71726 80246 89833 85796 120620 82302 99891 110960 85500 118320 TRUE FALSE FALSE 87681.20125 89630.07165 123065.965 90482.81823 108610.6493 86611.20546 78548.47182 83746.88602 102659.0657 88825.00152 0.987122992 1.009063553 1.385487902 1.018663852 1.222748634 0.975076881 0.884305888 0.942830111 1.155745162 1 16.43867819 -6.288128423 23.41487563 0.98131308 1.126804228 0.211475531 0.127630958 523.2981681 459098.1384 0.04539182 0.040048917 5.15E-07 6.288128423 0.145491148 RIPSIVSS(ph)PLNS(ph)PLDR ddPTM_HeLa_A486_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 RIPS(0.031)IVS(0.129)S(0.84)PLNS(1)PLDR 61.767 0.010273 181760000 48625 49982 47318 18267 55506 48906 53804 50281 43218 52147 TRUE FALSE FALSE 45216.6386 46021.24429 65640.79682 42526.49916 48543.91991 42872.47496 40341.67012 38833.11393 46964.17104 39089.05178 1.156759669 1.177343583 1.679262961 1.087938879 1.241880212 1.096789843 1.032045248 0.993452441 1.201466111 1 15.25447697 -6.003124232 1.529698649 1.058016448 1.307225447 0.304520332 0.157531259 0.488202474 2.332503676 0.064036593 0.071169192 9.93E-07 6.003124232 0.249208999 RIPSIVSS(ph)PLNSPLDR ddPTM_HeLa_A485_30min_R1 3 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 RIPSIVS(0.285)S(0.715)PLNSPLDR;RIPSIVS(0.217)S(0.783)PLNSPLDR;RIPS(0.001)IVS(0.169)S(0.83)PLNSPLDR ;; 120.32 3.59E-05 2562520000 535345 870626 824769 473711 881180 740662 865011 926780 631996 580911 TRUE FALSE FALSE 654430.6483 972438.1373 1129885.375 499588.6324 793446.6252 779441.917 680194.3334 699485.7519 758831.8002 436100.5786 1.50064155 2.229848308 2.59088254 1.145581219 1.819411998 1.787298516 1.559718943 1.603955111 1.740038508 1 18.73430138 -10.57663529 0.138053534 9.44E-10 2.219358572 0.315111684 0.36674677 50.50026871 1.15787118 20.5498439 3.138003166 2.65E-11 10.57663529 2.219358571 RIPSIVSS(ph)PLNSPLDR ddPTM_HeLa_A486_30min_R1 3 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 RIPSIVS(0.081)S(0.919)PLNSPLDR;RIPSIVS(0.082)S(0.918)PLNSPLDR;RIPS(0.001)IVS(0.075)S(0.925)PLNSPLDR ;; 139.2 1.90E-06 1387406000 541766 570299 489810 156166 636641 464728 530018 561981 381006 508370 TRUE FALSE FALSE 503791.0011 525106.4302 679477.5496 363562.3402 556787.5493 407394.5844 397401.8904 434030.1943 414031.9069 381070.8431 1.322040272 1.37797588 1.783074097 0.954054467 1.461112965 1.06907834 1.042855673 1.138975081 1.086495895 1 18.5396997 -5.864289816 1.038144715 1.069241085 1.450694919 0.386155391 0.193204619 0.549146147 1.271613312 0.08858129 0.120922964 1.37E-06 5.864289816 0.381453834 RIPSIVSSPLNS(ph)PLDR ddPTM_HeLa_A486_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 RIPSIVSSPLNS(1)PLDR 71.651 0.0047461 189900000 89917 56945 65736 72234 100610 102020 171500 155200 61908 138700 TRUE FALSE FALSE 83614.28263 52432.47081 91190.73967 168164.4025 87990.55565 89433.80966 128588.8861 119864.348 67274.23529 103968.6172 0.804226168 0.504310553 0.877098706 1.617453488 0.846318418 0.860200049 1.236804812 1.152889701 0.647062903 1 16.66578859 -4.997669034 24.63404921 1.064344344 0.663377227 0.27658713 0.256149847 76.0978058 804161.2659 0.066772079 0.137584829 1.01E-05 4.997669034 -0.400967117 RIPVLS(ph)PKPAVAPPAPPSSSQLCR ddPTM_HeLa_A485_30min_R1 2 RIPVLSPKPAVAPPAPPSSSQLCR 24 2 Q6PJT7;Q6PJT7-5;Q6PJT7-4;G3V256;Q6PJT7-10;G3V411;Q6PJT7-8 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 RIPVLS(1)PKPAVAPPAPPSSSQLCR;RIPVLS(1)PKPAVAPPAPPSSSQLCR ; 76.765 0.0030243 401200000 330626 316255 268354 394540 449880 379613 504450 521930 325454 583340 TRUE FALSE FALSE 404172.6131 353238.2712 367629.3117 416092.7212 405088.3676 399488.9497 396670.1365 393925.8491 390769.6326 437924.0736 0.922928511 0.806619897 0.839481851 0.950148088 0.925019637 0.912233361 0.905796599 0.899530017 0.892322793 1 18.74032123 -14 0.110538713 1.320798351 0.83684449 0.39573628 0.03963598 183.5493159 1.344927501 13.49945603 0.528735249 1.00E-14 14 -0.483953862 RIPVLS(ph)PKPAVAPPAPPSSSQLCR ddPTM_HeLa_A486_30min_R1 1 RIPVLSPKPAVAPPAPPSSSQLCR 24 2 Q6PJT7;Q6PJT7-5;Q6PJT7-4;G3V256;Q6PJT7-10;G3V411;Q6PJT7-8 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 RIPVLS(1)PKPAVAPPAPPSSSQLCR 130.25 1.76E-06 240220000 347970 336740 199260 180600 371460 361010 466160 440840 239680 482910 TRUE FALSE FALSE 323579.0999 310055.496 276418.8084 420445.927 324868.0231 316472.2567 349521.8375 340470.3555 260455.6554 361986.1928 0.893899012 0.856539565 0.763616994 1.161497138 0.897459709 0.874266099 0.965566766 0.940561718 0.719518204 1 18.46557514 RIPVS(ph)PEQAR ddPTM_HeLa_A485_30min_R1 3 RIPVSPEQAR 10 1 C9J7L6;Q9H981-2;Q9H981 C9J7L6 ACTR8 Actin-related protein 8 1 0 RIPVS(1)PEQAR;RIPVS(1)PEQAR;RIPVS(1)PEQAR ;; 121.42 0.00011847 1561770000 153375 210268 198969 154781 233186 202299 243381 272783 173465 200651 TRUE FALSE FALSE 187492.7396 234857.0135 272575.9129 163236.2941 209969.1831 212891.0628 191380.6611 205882.5415 208277.8344 150632.3984 1.244703939 1.559140105 1.809543735 1.083673206 1.393917811 1.41331523 1.270514598 1.366787914 1.382689492 1 17.20067258 -12.89707452 0.162708198 7.10E-10 1.510843108 0.305845383 0.181197181 111.4273953 1.432786968 37.59574819 0.789434669 1.27E-13 12.89707452 1.510843107 RIPVS(ph)PEQAR ddPTM_HeLa_A486_30min_R1 3 RIPVSPEQAR 10 1 C9J7L6;Q9H981-2;Q9H981 C9J7L6 ACTR8 Actin-related protein 8 1 0 RIPVS(1)PEQAR;RIPVS(1)PEQAR;RIPVS(1)PEQAR ;; 143.56 3.48E-06 1111340000 227714 246733 233526 66492 292662 235756 240928 278095 211364 217818 TRUE FALSE FALSE 211752.4245 227180.9785 323953.5212 154796.7363 255953.603 206670.8217 180645.2661 214778.8393 229685.2017 163274.955 1.296906953 1.391401262 1.984098058 0.948073979 1.567623172 1.265783976 1.106386868 1.315442648 1.406738723 1 17.31694399 -5.279589187 24.99437526 1.253557728 1.540862118 0.2741761 0.24159114 1164.172096 1603196.314 0.066826885 0.099340232 5.25E-06 5.279589187 0.287304389 RIQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_HeLa_A485_30min_R1 4 RIQPQPPDEDGDHSDKEDEQPQVVVLK 27 2 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 RIQPQPPDEDGDHS(1)DKEDEQPQVVVLK;RIQPQPPDEDGDHS(1)DKEDEQPQVVVLK;RIQPQPPDEDGDHS(1)DKEDEQPQVVVLK;RIQPQPPDEDGDHS(1)DKEDEQPQVVVLK ;;; 116.39 7.95E-05 3261850000 923136 846527 500836 1584560 1146910 1173905 1825560 1898550 820828 2114210 TRUE FALSE FALSE 1128484.418 945520.9688 686116.0779 1671120.5 1032719.613 1235368.851 1435514.193 1432927.636 985560.6505 1587176.356 0.711001278 0.59572521 0.432287235 1.052888984 0.650664691 0.778343784 0.904445298 0.902815639 0.6209522 1 20.59803101 -5.251174054 24.99208172 0.83194172 0.581276648 0.413774201 0.143814805 717.0371299 1745704.086 0.038034753 0.064932193 5.61E-06 5.251174054 -0.250665073 RIQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_HeLa_A486_30min_R1 2 RIQPQPPDEDGDHSDKEDEQPQVVVLK 27 2 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 RIQPQPPDEDGDHS(1)DKEDEQPQVVVLK;RIQPQPPDEDGDHS(1)DKEDEQPQVVVLK ; 91.813 0.0012422 1712760000 947240 824250 381110 752190 863610 1084080 1485920 1397440 638730 2054750 TRUE FALSE FALSE 880843.3676 758933.4281 528685.9985 1751136.334 755287.981 950337.2317 1114127.1 1079273.418 694095.6307 1540227.226 0.57189183 0.492741211 0.34325195 1.136933762 0.490374387 0.617011059 0.723352425 0.700723504 0.450644956 1 20.55471177 -11.61470909 2.204560265 9.607290251 0.620151874 0.239288264 0.206161692 5763672.112 338391.4491 249817691.7 0.050845587 2.43E-12 11.61470909 -8.987138377 RIQPQPPDEDGDHS(ph)DKEDEQPQVVVLKK ddPTM_HeLa_A485_30min_R1 1 RIQPQPPDEDGDHSDKEDEQPQVVVLKK 28 3 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 RIQPQPPDEDGDHS(1)DKEDEQPQVVVLKK 188.36 1.64E-20 237510000 98597 89182 57434 135990 106620 134070 232380 287990 80982 181410 TRUE FALSE FALSE 120529.5625 99611.05912 78681.22663 143418.7894 96004.53843 141089.6979 182730.1146 217360.0009 97234.34459 136187.8256 0.885024502 0.73142411 0.577740531 1.053095522 0.704942149 1.035993469 1.341750732 1.596031069 0.71397237 1 17.05523822 -6.475541051 4.264456114 1.212036535 0.79226278 0.338179376 0.243476858 0.225154358 8.736961603 0.089290912 0.075099662 3.35E-07 6.475541051 -0.419773756 RIQPQPPDEDGDHS(ph)DKEDEQPQVVVLKK ddPTM_HeLa_A486_30min_R1 1 RIQPQPPDEDGDHSDKEDEQPQVVVLKK 28 3 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 RIQPQPPDEDGDHS(1)DKEDEQPQVVVLKK 196.06 1.66E-21 233060000 140570 88083 43784 84419 93112 105840 176830 158020 57241 238100 TRUE FALSE FALSE 130716.7689 81102.98229 60738.33738 196531.6983 81433.02473 92782.5369 132585.2637 122042.2956 62202.69597 178478.2102 0.732396233 0.454413915 0.34031234 1.101152337 0.456263118 0.519853582 0.742865269 0.683793811 0.348517031 1 17.44538843 -10.39831821 3.316246748 1.004028498 0.601098743 0.23448474 0.217974883 190930870 262408266.9 7343865.551 0.053744013 4.00E-11 10.39831821 -0.402929754 RIQQHVGEEAS(ph)PR ddPTM_HeLa_A485_30min_R1 3 RIQQHVGEEASPR 13 1 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 RIQQHVGEEAS(1)PR;RIQQHVGEEAS(1)PR;RIQQHVGEEAS(1)PR ;; 85.493 0.0015575 270990000 279289 431860 429850 241574 505340 451740 455710 580230 421800 357634 TRUE FALSE FALSE 341415.8745 482362.2703 588869.4026 254770.5759 455026.5752 475392.4079 358343.8357 437927.6827 506451.391 268482.4256 1.271650738 1.796625121 2.193325695 0.948928316 1.694809537 1.770664902 1.334701275 1.631122342 1.886348389 1 18.03446813 -10.04854484 4.409946032 0.999962654 1.616314886 0.233896225 0.333478692 41587410.74 23690371.68 14541.08102 0.079244219 8.94E-11 10.04854484 0.616352232 RIQQHVGEEAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 RIQQHVGEEASPR 13 1 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 RIQQHVGEEAS(1)PR 114.01 0.00021646 0 77336 69137 76368 24801 105800 67176 76546 80243 69061 82042 TRUE FALSE FALSE 71915.14576 63658.33233 105939.7348 57737.98137 92529.57745 58888.50812 57393.38118 61973.42059 75047.26309 61498.1492 1.169387156 1.035125986 1.722649156 0.93885722 1.504591255 0.957565535 0.933253796 1.007728223 1.220317425 1 15.90825537 -6.292361618 24.91072654 1.018598534 1.267136991 0.242904258 0.220724035 970.9894944 782218.7051 0.074893744 0.06605749 5.10E-07 6.292361618 0.248538457 RIS(ph)ACLSDYSLASDSGVFEPLTK ddPTM_HeLa_A485_30min_R1 2 RISACLSDYSLASDSGVFEPLTK 23 1 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 0 RIS(0.677)ACLS(0.219)DY(0.022)S(0.08)LAS(0.001)DSGVFEPLTK;RIS(0.836)ACLS(0.163)DYS(0.001)LASDSGVFEPLTK ; 125.52 3.24E-09 76629000 114912 115351 103055 131463 126721 103971 144459 145124 117565 172408 TRUE FALSE FALSE 140473.778 128840.296 141179.333 138644.4908 114104.2123 109414.7608 113594.1545 109532.1115 141159.2171 129429.8585 1.085327447 0.995444927 1.090778701 1.071194023 0.881591107 0.845359502 0.877650303 0.846266176 1.090623282 1 16.98181095 -5.757899075 24.99895894 0.909687348 1.058175661 0.436228866 0.075349246 80.97250078 571761.9197 0.022426884 0.027807858 1.75E-06 5.757899075 0.148488314 RIS(ph)ACLSDYSLASDSGVFEPLTK ddPTM_HeLa_A486_30min_R1 1 RISACLSDYSLASDSGVFEPLTK 23 1 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 0 RIS(0.985)ACLS(0.013)DYS(0.002)LASDSGVFEPLTK 139.72 2.32E-07 82842000 71765 88964 64977 33722 87483 86266 91511 83341 68059 91667 TRUE FALSE FALSE 66734.64409 81914.16864 90137.83454 78506.52022 76510.06639 75623.37801 68613.9799 64366.07362 73958.40892 68712.98655 0.971208609 1.192120627 1.31180202 1.142528133 1.113473162 1.100568929 0.998559128 0.936738117 1.076338151 1 16.06829517 -6.481409481 1.72173585 0.996231388 1.163041524 0.382260271 0.085005676 0.373922078 2.224456783 0.041171677 0.031868047 3.30E-07 6.481409481 0.166810136 RIS(ph)EMEEELK ddPTM_HeLa_A485_30min_R1 3 RISEMEEELK 10 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RIS(1)EMEEELK;RIS(1)EMEEELK;RIS(1)EMEEELK ;; 141.85 3.81E-06 61694000 161449 165242 127078 210985 212859 181393 251551 251758 152499 284629 TRUE FALSE FALSE 197362.7731 184565.6145 174089.4404 222510.5763 191666.0106 190890.457 197805.0739 190013.9558 183104.1505 213676.2285 0.923653391 0.863762973 0.814734711 1.041344551 0.896992669 0.893363096 0.925723349 0.889261089 0.856923354 1 17.70506689 RIS(ph)EMEEELK ddPTM_HeLa_A486_30min_R1 2 RISEMEEELK 10 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RIS(1)EMEEELK;RIS(1)EMEEELK ; 169.4 1.79E-07 424892000 293250 292420 184182 155344 321830 337910 418310 404900 227320 468290 TRUE FALSE FALSE 272694.6893 269247.5742 255502.203 361648.6827 281463.0805 296222.0998 313644.4136 312713.1089 247024.2806 351027.1359 0.776847888 0.767027807 0.727870232 1.030258478 0.801827129 0.843872366 0.893504751 0.890851666 0.703718475 1 18.42122304 RIS(ph)FSASHR ddPTM_HeLa_A485_30min_R1 6 RISFSASHR 9 1 E9PKY8;E9PJM0;Q03393 E9PKY8 PTS 6-pyruvoyl tetrahydrobiopterin synthase 1 0 RIS(1)FSASHR;RIS(0.994)FS(0.006)ASHR;RIS(1)FSASHR;RIS(1)FSASHR;RIS(1)FSASHR;RIS(1)FSASHR ;;;;; 162.38 7.22E-06 4158880000 529189 782649 824636 438942 895980 741872 855667 945520 678314 624652 TRUE FALSE FALSE 646905.2674 874172.9924 1129703.172 462920.29 806773.0852 780715.2708 672846.7553 713629.7375 814445.3979 468937.7523 1.379512023 1.864155718 2.40906851 0.987167887 1.720426819 1.664859071 1.434831706 1.521800567 1.736787866 1 18.8390369 -11.70512847 0.204498311 8.37E-15 1.767161787 0.228773882 0.348129334 74.01303811 1.706483724 34.25571326 0.871125892 1.97E-12 11.70512847 1.767161787 RIS(ph)FSASHR ddPTM_HeLa_A486_30min_R1 6 RISFSASHR 9 1 E9PKY8;E9PJM0;Q03393 E9PKY8 PTS 6-pyruvoyl tetrahydrobiopterin synthase 1 0 RIS(1)FSASHR;RIS(1)FSASHR;RIS(1)FSASHR;RIS(1)FSASHR;RIS(1)FSASHR;RIS(1)FSASHR ;;;;; 151.16 3.85E-05 3184220000 818286 991748 1046201 162650 1231520 819121 1032686 1012876 848824 722629 TRUE FALSE FALSE 760928.377 913158.2766 1451318.045 378657.4199 1077051.278 718066.1792 774297.0402 782266.2457 922400.7478 541677.9949 1.404761471 1.685795408 2.679300358 0.699045233 1.988360776 1.325632915 1.429441564 1.444153636 1.702858075 1 19.04707596 -5.266051843 24.99987592 1.414836099 1.899536691 0.238387151 0.447647459 617.1990663 3345265.192 0.121036709 0.186419899 5.42E-06 5.266051843 0.484700592 RIS(ph)GLIYEETR ddPTM_HeLa_A485_30min_R1 7 RISGLIYEETR 11 1 P62805 P62805 HIST1H4A Histone H4 1 0 RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR ;;;;;; 189.52 5.33E-11 3889829000 1937364 2741472 3058753 2067277 3759040 2336673 3080414 3260573 2850449 3012038 TRUE FALSE FALSE 2368323.938 3062063.303 4190313.02 2180207.108 3384776.779 2459017.585 2422258.384 2460912.359 3422507.968 2261192.359 1.047378357 1.354180811 1.853143101 0.964184714 1.496899087 1.087487128 1.071230572 1.088325082 1.5135855 1 21.1086523 -6.27663359 24.68503659 1.152590029 1.351048165 0.117351252 0.261505167 1578.307272 2564163.603 0.091337222 0.080866348 5.29E-07 6.27663359 0.198458137 RIS(ph)GLIYEETR ddPTM_HeLa_A486_30min_R1 6 RISGLIYEETR 11 1 P62805 P62805 HIST1H4A Histone H4 1 0 RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR ;;;;; 206.75 4.05E-15 3304030000 2143630 2306100 2584790 765962 2790460 2185470 2653530 2438380 2252100 2383570 TRUE FALSE FALSE 1993372.607 2123356.237 3585689.911 1783198.246 2440454.487 1915848.932 1989588.728 1883214.103 2447313.841 1786708.558 1.115667465 1.188417791 2.006868941 0.998035319 1.365893993 1.072278365 1.113549672 1.054013032 1.369733094 1 20.76887289 RIS(ph)HMPSRPELSAVATDLRK ddPTM_HeLa_A485_30min_R1 1 RISHMPSRPELSAVATDLRK 20 3 E9PFH1;P61587 E9PFH1 RND3 Rho-related GTP-binding protein RhoE 1 0 RIS(1)HMPSRPELSAVATDLRK 99.064 0.00024448 414340000 137510 132820 90869 97866 171350 157860 223680 259440 116260 153670 TRUE FALSE FALSE 168098.6251 148352.1436 124485.2245 103212.1718 154289.7924 166125.3055 175888.9407 195811.9332 139592.3156 115362.8971 1.457129019 1.285960628 1.079075055 0.894673889 1.337429938 1.440023697 1.524657799 1.69735624 1.210027826 1 16.81581977 -5.988523609 24.96700483 1.423092497 1.171728426 0.132471128 0.221375913 345.7472792 752171.7563 0.069511362 0.078755789 1.03E-06 5.988523609 -0.251364071 RIS(ph)HMPSRPELSAVATDLRK ddPTM_HeLa_A486_30min_R1 2 RISHMPSRPELSAVATDLRK 20 3 E9PFH1;P61587 E9PFH1 RND3 Rho-related GTP-binding protein RhoE 1 0 RIS(1)HMPSRPELSAVATDLRK;RIS(1)HMPSRPELSAVATDLRK ; 102.46 0.00011366 900700000 438850 419110 410430 208055 580270 490490 618700 626380 316754 426710 TRUE FALSE FALSE 408088.8812 385898.1972 569359.4877 484362.5545 507487.1258 429978.3307 463894.7161 483766.9478 344210.4918 319859.0386 1.275839767 1.206463319 1.780032511 1.514300039 1.586596171 1.344274442 1.450309856 1.512437947 1.076131828 1 18.28707673 -7.814072325 5.330041839 1.014677859 1.463307846 0.544097744 0.154254033 0.156791556 9.098612179 0.151225025 0.040525814 1.53E-08 7.814072325 0.448629987 RIS(ph)LSDMPR ddPTM_HeLa_A485_30min_R1 4 RISLSDMPR 9 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(0.914)LS(0.086)DMPR;RIS(0.989)LS(0.011)DMPR ;;; 172.76 2.57E-06 291320000 493441 676032 654534 455699 701141 527225 553241 537478 461337 491542 TRUE FALSE FALSE 603205.2481 755088.0617 896673.364 480592.6825 631332.9402 554829.6858 435036.5408 405660.6778 553923.1043 369009.6256 1.634659928 2.046255733 2.42994573 1.30238522 1.710884748 1.503564263 1.178930062 1.099322754 1.501107467 1 18.49329892 -5.967569308 0.932153985 1.197261828 2.001203952 0.541825731 0.284124687 0.440623418 0.83453172 0.152009891 0.190961932 1.08E-06 5.967569308 0.803942124 RIS(ph)LSDMPR ddPTM_HeLa_A486_30min_R1 3 RISLSDMPR 9 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 RIS(1)LSDMPR;RIS(1)LSDMPR;RIS(1)LSDMPR ;; 186.36 1.41E-08 1056541000 281890 260358 244190 80767.9 273162 230009 245478 228464 244302 285052 TRUE FALSE FALSE 262130.9667 239726.2839 338746.9076 188031.753 238899.4748 201632.8281 184056.808 176447.7345 265478.2941 213673.1238 1.226784923 1.121929982 1.585351033 0.879997211 1.118060477 0.943650865 0.861394286 0.825783474 1.242450568 1 17.70504593 -5.28694532 24.9905078 0.973454144 1.292412862 0.468626547 0.160357576 643.8353993 630823.0801 0.044451451 0.065959561 5.16E-06 5.28694532 0.318958718 RIS(ph)MEDLNK ddPTM_HeLa_A485_30min_R1 4 RISMEDLNK 9 1 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RIS(1)MEDLNK;RIS(1)MEDLNK;RIS(1)MEDLNK;RIS(1)MEDLNK ;;; 126.32 0.00016783 1237680000 1667090 1653860 1407270 2072740 1935550 1835570 2434480 2569410 1621590 2777260 TRUE FALSE FALSE 2037928.419 1847264.54 1927877.734 2185968.538 1742839.846 1931677.607 1914333.46 1939258.169 1947028.239 2084940.194 0.97745174 0.886003611 0.924668122 1.048456231 0.835918388 0.926490656 0.918171881 0.930126521 0.93385328 1 20.99157457 -8.442806749 2.590425439 0.999999188 0.92943372 0.134747756 0.05221314 13.05261221 73.6686907 0.049049135 0.013209903 3.61E-09 8.442806749 -0.070565469 RIS(ph)MEDLNK ddPTM_HeLa_A486_30min_R1 3 RISMEDLNK 9 1 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RIS(1)MEDLNK;RIS(1)MEDLNK;RIS(1)MEDLNK ;; 134.61 0.00011522 812960000 1527090 1448900 895540 652882 1454270 1686760 2086400 2100120 1298500 2225090 TRUE FALSE FALSE 1420048.877 1334083.887 1242317.071 1519942.291 1271861.896 1478664.701 1564360.652 1621968.521 1411055.026 1667912.981 0.851392664 0.799852212 0.744833265 0.911283927 0.762546914 0.886535879 0.937915029 0.972453923 0.846000386 1 20.66961259 -6.502299216 4.216090163 0.93523487 0.814771633 0.519916391 0.056725915 0.174222004 7.243108316 0.020725864 0.017038376 3.15E-07 6.502299216 -0.120463237 RIS(ph)MEDLNKR ddPTM_HeLa_A485_30min_R1 1 RISMEDLNKR 10 2 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RIS(1)MEDLNKR 76.326 0.012108 0 172980 190030 147810 213770 221410 179010 225930 251450 136700 235820 TRUE FALSE FALSE 211458.8042 212252.3555 202491.0699 225447.7138 199365.643 188382.6868 177658.2098 189781.4932 164134.4361 177034.4139 1.194450274 1.198932743 1.143794957 1.273468298 1.12614061 1.064102073 1.003523585 1.072003398 0.927132937 1 17.43367031 -6.265175104 1.990540048 1.00695745 1.198353482 0.793749929 0.0460155 0.147324969 1.147169183 0.017893439 0.016377555 5.43E-07 6.265175104 0.191396032 RIS(ph)QSQPVR ddPTM_HeLa_A485_30min_R1 8 RISQSQPVR 9 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(0.978)QS(0.022)QPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR ;;;;;;; 180.24 2.18E-08 11105780000 1750337 2613380 2570660 1607319 2489827 2101986 2423339 2534680 1905711 1867628 TRUE FALSE FALSE 2139693.427 2918992.058 3521654.108 1695122.767 2241931.082 2212042.737 1905572.826 1913045.756 2288169.717 1402062.711 1.52610394 2.081926889 2.511766472 1.209020648 1.599023399 1.57770599 1.359120966 1.36445092 1.632002406 1 20.41911945 -5.276559224 24.98798131 1.421844753 2.044131915 0.516936825 0.286145144 628.2013699 1038202.722 0.0796835 0.118708527 5.29E-06 5.276559224 0.622287162 RIS(ph)QSQPVR ddPTM_HeLa_A486_30min_R1 7 RISQSQPVR 9 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR;RIS(1)QSQPVR ;;;;;; 202.27 4.67E-10 8193239000 1063350 1116187 1095980 332298 1291686 864696 1075948 1121363 923130 1072004 TRUE FALSE FALSE 988814.6561 1027736.277 1520372.807 773606.5374 1129670.697 758018.5991 806734.4302 866053.1241 1003147.652 803567.2208 1.230531349 1.278967397 1.892029401 0.962715399 1.405819785 0.943316974 1.003941437 1.077760642 1.248368059 1 19.61605919 -5.309251222 24.99991673 1.098191879 1.448357101 0.394957379 0.212475088 409.2583762 213992.6154 0.05943469 0.08815613 4.91E-06 5.309251222 0.350165223 RIS(ph)SSSVQPCSEEVSTPQDSLAQCK ddPTM_HeLa_A485_30min_R1 3 RISSSSVQPCSEEVSTPQDSLAQCK 25 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 RIS(0.388)S(0.072)S(0.215)S(0.314)VQPCS(0.011)EEVSTPQDSLAQCK;RIS(0.953)S(0.031)S(0.008)S(0.008)VQPCSEEVSTPQDSLAQCK;RIS(0.649)S(0.304)S(0.024)S(0.024)VQPCSEEVSTPQDSLAQCK ;; 178.63 2.22E-20 963980000 368139 344960 365624 424326 534108 370556 527780 490616 388410 531118 TRUE FALSE FALSE 450030.2505 385300.0712 500883.5325 447505.8549 480930.3322 389957.7392 415015.4914 370291.6567 466360.3243 398720.0571 1.128687264 0.966342336 1.256228583 1.122356016 1.206185452 0.978023885 1.040869362 0.928700852 1.169643503 1 18.60501665 -6.271539564 24.90419634 1.020080188 1.132462551 0.278239618 0.090437233 913.4386465 2252275.279 0.031092723 0.027754295 5.35E-07 6.271539564 0.112382362 RIS(ph)SSSVQPCSEEVSTPQDSLAQCK ddPTM_HeLa_A486_30min_R1 2 RISSSSVQPCSEEVSTPQDSLAQCK 25 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 RIS(0.618)S(0.094)S(0.124)S(0.164)VQPCS(0.001)EEVSTPQDSLAQCK;RIS(0.497)S(0.168)S(0.168)S(0.168)VQPCSEEVSTPQDSLAQCK ; 142.22 3.40E-09 688510000 196381 197071 161343 90419 235682 252531 267557 286024 190966 266944 TRUE FALSE FALSE 182615.706 181454.3762 223819.3305 210500.0015 206120.5659 221376.2928 200611.4087 220902.5791 207519.0866 200099.4849 0.912624568 0.906820806 1.118540263 1.051976729 1.030090437 1.106331148 1.002558346 1.103963757 1.037079564 1 17.61035793 -4.747482518 24.98625426 1.058805039 0.909722567 0.684192229 0.039809627 116.3964962 208375.1548 0.009370118 0.02452275 1.79E-05 4.747482518 -0.149082471 RIS(ph)TLTIEEGNLDIQRPK ddPTM_HeLa_A485_30min_R1 1 RISTLTIEEGNLDIQRPK 18 2 Q12972;A0A0A0MT09;Q12972-2 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 1 0 RIS(0.961)T(0.039)LTIEEGNLDIQRPK 149.84 1.52E-08 147330000 45268 54709 49889 58693 73081 63713 70136 85940 52174 77057 TRUE FALSE FALSE 55337.71043 61106.74164 68345.01715 61899.24997 65804.79904 67048.91416 55150.87064 64863.08025 62644.84323 57848.10803 0.956603635 1.056330859 1.181456395 1.070030673 1.137544533 1.159051116 0.953373801 1.12126537 1.082919483 1 15.81998216 -9.709124563 13.65930003 0.999998113 1.083375892 0.094977545 0.073210562 0 0 0.070917543 0.017200031 1.95E-10 9.709124563 0.083377779 RIS(ph)TLTIEEGNLDIQRPK ddPTM_HeLa_A486_30min_R1 2 RISTLTIEEGNLDIQRPK 18 2 Q12972;A0A0A0MT09;Q12972-2 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 1 0 RIS(0.979)T(0.021)LTIEEGNLDIQRPK;RIS(0.855)T(0.145)LTIEEGNLDIQRPK ; 240.71 1.10E-45 247850000 133769 148411 107619 62849 175479 161428 178440 190377 128085 184216 TRUE FALSE FALSE 124392.4839 136650.3719 149291.9589 146315.6482 153468.7875 141512.6546 133792.4247 147032.313 139187.5109 138087.1146 0.900826151 0.989595389 1.081143302 1.059589439 1.111391081 1.024807094 0.968898692 1.064779386 1.007968856 1 17.07521918 -4.397239647 3.140101563 1.042227104 0.897118939 0.528010113 0.04003672 0.226095548 3.636859509 0.010739114 0.066073831 4.01E-05 4.397239647 -0.145108165 RIS(ph)TSDILSEK ddPTM_HeLa_A485_30min_R1 4 RISTSDILSEK 11 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 RIS(0.955)T(0.037)S(0.008)DILSEK;RIS(0.967)T(0.028)S(0.004)DILSEK;RIS(0.904)T(0.084)S(0.012)DILSEK;RIS(0.975)T(0.022)S(0.003)DILSEK ;;; 128.74 2.87E-05 569340000 828170 961300 783150 778410 1107270 925390 1026130 1171970 754180 979080 TRUE FALSE FALSE 1012393.559 1073715.673 1072869.775 820932.5673 997026.3109 973841.9895 806888.9428 884542.5199 905537.0083 735013.3746 1.377381139 1.460811068 1.459660207 1.116894734 1.356473699 1.324930978 1.097788109 1.203437312 1.232000722 1 19.48741098 -1 0.083313907 0.781504335 2.605533425 0.599525493 0.095088898 124.551334 0.754783411 2.37747137 26.07145666 0.1 1 1.824029091 RIS(ph)YVQDENRDPIR ddPTM_HeLa_A485_30min_R1 2 RISYVQDENRDPIR 14 2 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 1 0 RIS(0.998)Y(0.002)VQDENRDPIR;RIS(0.999)Y(0.001)VQDENRDPIR ; 77.505 0.0044866 1414110000 659390 851580 902650 722780 994450 763390 847390 901740 811990 904780 TRUE FALSE FALSE 806069.0306 951164.8732 1236577.797 762263.6412 895439.0663 803359.92 666338.204 680586.8511 974948.945 679234.9972 1.18673071 1.400347269 1.820544881 1.122238466 1.318305255 1.182742237 0.981012767 1.001990259 1.435363238 1 19.37355127 RIS(ph)YVQDENRDPIR ddPTM_HeLa_A486_30min_R1 2 RISYVQDENRDPIR 14 2 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 1 0 RIS(0.997)Y(0.003)VQDENRDPIR;RIS(0.999)Y(0.001)VQDENRDPIR ; 94.71 0.00075845 1233820000 855770 1111830 1119910 307640 1265510 1022310 1113930 1079860 1018500 949250 TRUE FALSE FALSE 795784.9422 1023724.542 1553569.144 716201.4673 1106777.935 896187.7863 835212.932 833999.4512 1106784.4 711551.6214 1.118379775 1.438721395 2.183354092 1.006534798 1.555442925 1.259483865 1.17379106 1.172085659 1.55545201 1 19.4406089 RIS(ph)YVQDENRDPIRR ddPTM_HeLa_A485_30min_R1 3 RISYVQDENRDPIRR 15 3 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 1 0 RIS(1)YVQDENRDPIRR;RIS(1)YVQDENRDPIRR;RIS(1)YVQDENRDPIRR ;; 169.77 2.08E-11 7201070000 1040480 1418200 1302840 1058380 1521450 1338650 1514430 1786090 1289750 1448090 TRUE FALSE FALSE 1271931.186 1584046.153 1784814.732 1116196.619 1369969.096 1408739.644 1190859.659 1348048.627 1548590.995 1087107.813 1.17001384 1.457119647 1.641801034 1.026757977 1.260196164 1.295860104 1.095438414 1.240032139 1.424505441 1 20.0520636 -5.267328728 24.99809976 1.204995738 1.42639232 0.299442526 0.16111651 608.862384 2584396.046 0.044835579 0.068482163 5.40E-06 5.267328728 0.221396582 RIS(ph)YVQDENRDPIRR ddPTM_HeLa_A486_30min_R1 4 RISYVQDENRDPIRR 15 3 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 1 0 RIS(1)YVQDENRDPIRR;RIS(1)YVQDENRDPIRR;RIS(1)YVQDENRDPIRR;RIS(1)YVQDENRDPIRR ;;; 151.22 2.80E-07 6712580000 1739340 1736620 1487150 569323 2084760 1505330 1810640 1746010 1473060 1841850 TRUE FALSE FALSE 1617421.248 1599003.907 2063014.307 1325412.716 1823269.961 1319617.69 1357598.721 1348481.638 1600746.027 1380638.772 1.17150212 1.158162395 1.49424625 0.959999634 1.320598841 0.955802283 0.983312036 0.976708511 1.159424217 1 20.39690447 -6.2694748 24.86679689 1.0116101 1.218107557 0.362342018 0.136476911 640.1049068 1980893.478 0.046206729 0.041452662 5.38E-07 6.2694748 0.206497457 RIT(ph)SPLMEPSSIEK ddPTM_HeLa_A486_30min_R1 1 RITSPLMEPSSIEK 14 1 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 RIT(0.5)S(0.5)PLMEPSSIEK 72.932 0.0021523 0 241540 226700 194030 119380 315190 235900 306010 339430 181430 276920 TRUE FALSE FALSE 224609.2933 208735.4664 269163.6123 277922.6731 275655.9312 206797.0565 229443.0614 262149.1987 197156.4985 207577.4296 1.082050654 1.005578819 1.296690169 1.338886765 1.327966782 0.996240569 1.105337232 1.262898376 0.949797379 1 17.66329006 -6.270096331 24.98998989 1.081941022 1.210815297 0.245807297 0.126892637 1185.606355 3422474.47 0.048176372 0.043135873 5.37E-07 6.270096331 0.128874276 RITS(ph)PLMEPSSIEK ddPTM_HeLa_A485_30min_R1 2 RITSPLMEPSSIEK 14 1 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 RIT(0.389)S(0.611)PLMEPSSIEK;RIT(0.421)S(0.579)PLMEPSSIEK ; 88.551 0.00088433 136970000 258970 356490 285760 248320 448400 405370 495400 586660 285260 375960 TRUE FALSE FALSE 316576.9831 398178.4044 391474.5155 261885.0928 403755.7216 426594.5464 389553.743 442780.7152 342509.0654 282240.091 1.12165845 1.410779039 1.387026606 0.927880557 1.430539935 1.511459782 1.38022115 1.568808717 1.213537964 1 18.10656341 -4.247276559 23.09579014 1.334271807 1.12165803 0.069963147 0.199470956 2197.917713 3584040.298 0.049349126 0.912602614 5.66E-05 4.247276559 -0.212613777 RIVS(ph)DGEDEDDSFKDTSSINPFNTSLFQFSSVK ddPTM_HeLa_A486_30min_R1 1 RIVSDGEDEDDSFKDTSSINPFNTSLFQFSSVK 33 2 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 RIVS(0.981)DGEDEDDS(0.005)FKDT(0.005)S(0.005)S(0.005)INPFNTSLFQFSSVK 61.337 0.0046479 212520000 76037 77900 73045 49701 101830 74173 118140 126350 55889 102800 TRUE FALSE FALSE 70707.19896 71726.92029 101329.9802 115706.4397 89057.53187 65022.2894 88580.12244 97582.8632 60733.50352 77058.21088 0.917581633 0.930814763 1.314979663 1.501545889 1.155717617 0.843807411 1.149522178 1.266352568 0.788150968 1 16.23366107 -6.027929173 24.73838621 1.031049939 1.181113991 0.119512075 0.204235746 1616.530392 1431845.347 0.072709473 0.072882402 9.38E-07 6.027929173 0.150064052 RIVSQLLTLMDGLK ddPTM_HeLa_A485_30min_R1 4 RIVSQLLTLMDGLK 14 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;;; ;;; 166.6 1.50E-07 63570300 73195.2 85756.8 67784.9 68645.9 99942.5 95631.3 130739 140762 53079.2 97406 FALSE FALSE TRUE 89477.21972 95785.31178 92861.35528 72395.8517 89991.87378 100638.407 102805.5446 106239.8988 63731.70857 73124.47682 1.223628853 1.309893977 1.269907961 0.990035824 1.230666908 1.376261566 1.405897848 1.452863711 0.871550968 1 16.15806678 -7.772989231 24.99996108 0.935775268 1.278671139 0.555069381 0.124096486 202.4316348 438154.3972 0.127279279 0.033992731 1.69E-08 7.772989231 0.342895871 RIVSQLLTLMDGLK ddPTM_HeLa_A486_30min_R1 4 RIVSQLLTLMDGLK 14 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;;; ;;; 147.68 5.10E-06 49636900 112035.3 111639 85856.8 55215.1 132055.4 114255.6 153335 143966 94738.7 158045 FALSE FALSE TRUE 104182.204 102792.3191 119102.8523 128543.5432 115491.7804 100159.9057 114968.9612 111188.0846 102950.7268 118469.5033 0.879401037 0.86766903 1.005346093 1.085034879 0.974865068 0.845448853 0.970451956 0.938537611 0.869006149 1 16.8541562 RK(ac)HEEVCAIK(ac)IQR ddPTM_HeLa_A486_30min_R1 1 RKHEEVCAIKIQR 13 3 P35499 P35499 SCN4A Sodium channel protein type 4 subunit alpha 0 2 RK(1)HEEVCAIK(1)IQR 70.412 0.028209 24800000 11257 23061 21227 8417.6 27925 22798 26236 26253 20759 19421 FALSE TRUE FALSE 10467.94243 21233.56237 29446.66288 19596.5982 24422.38611 19985.41455 19671.4753 20275.765 22558.40683 14557.85519 0.719058013 1.458563923 2.022733603 1.346118501 1.677608809 1.372826855 1.351261916 1.392771444 1.549569393 1 13.8295102 -6.48937188 24.45787169 1.356976159 1.477505007 0.020728912 0.331061454 2340.577277 1708474.926 0.11854215 0.104470898 3.24E-07 6.48937188 0.120528848 RKADS(ph)LSSPR ddPTM_HeLa_A486_30min_R1 1 RKADSLSSPR 10 2 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 RKADS(0.857)LS(0.125)S(0.019)PR 88.187 0.0025023 60347000 174420 154770 110720 63070 162170 146290 163920 167400 119690 183110 TRUE FALSE FALSE 162194.0587 142505.4615 153593.7492 146830.1474 141829.1264 128242.2272 122905.4822 129286.6743 130064.8256 137258.0642 1.181672346 1.038230157 1.119014392 1.069737857 1.033302686 0.934314701 0.895433598 0.941924069 0.947593326 1 17.06653139 -5.99312135 1.99479178 0.93636731 1.102780155 0.762554005 0.041739513 0.151322001 1.214072863 0.014771214 0.016288303 1.02E-06 5.99312135 0.166412845 RKADTTTPTPTAILAPGS(ph)PAS(ph)PPGSLEPK ddPTM_HeLa_A485_30min_R1 2 RKADTTTPTPTAILAPGSPASPPGSLEPK 29 2 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;U3KQA6;A0A140T9V2;E9PIQ3;A0A0G2JHL0;A0A140T9F7;U3KPW0;H0YDJ7 P25440-2 BRD2 Bromodomain-containing protein 2 2 0 RKADT(0.001)T(0.001)T(0.001)PT(0.001)PT(0.001)AILAPGS(0.995)PAS(0.962)PPGS(0.038)LEPK;RKADTTTPTPTAILAPGS(1)PAS(0.994)PPGS(0.006)LEPK ; 101.11 0.00039854 286410000 127971 107654 70844 145649 156598 161714 293000 329650 135405 222790 TRUE FALSE FALSE 156437.7075 120243.1988 97052.14366 153605.4361 141006.5533 170181.095 230398.1564 248802.8206 162579.5415 167252.5531 0.935338233 0.718931918 0.580273017 0.918404133 0.84307564 1.017509699 1.377546424 1.487587579 0.972060148 1 17.35166871 -6.424019793 2.548733566 1.247767999 0.783123912 0.541527978 0.175235172 0.204859105 2.607631232 0.070705778 0.059032486 3.77E-07 6.424019793 -0.464644087 RKAEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_A485_30min_R1 1 RKAEDSDSEPEPEDNVR 17 2 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 RKAEDS(1)DS(1)EPEPEDNVR 76.21 0.019234 1342100000 1257800 1593300 2008200 1522700 2882900 2092500 2487200 3231600 2109700 2165700 TRUE FALSE FALSE 1537593.271 1779622.575 2751116.748 1605881.245 2595868.354 2202060.064 1955789.401 2439045.033 2533097.439 1625830.847 0.945727702 1.094592699 1.692129752 0.987729596 1.596641101 1.354421383 1.202947653 1.50018376 1.558032586 1 20.63274573 -4.538887067 24.51052501 1.370163525 0.982943802 0.273255033 0.228040596 183.3357635 280707.1774 0.054115 0.143275079 2.89E-05 4.538887067 -0.387219723 RKAEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_A486_30min_R1 2 RKAEDSDSEPEPEDNVR 17 2 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 0 RKAEDS(1)DS(1)EPEPEDNVR;RKAEDS(1)DS(1)EPEPEDNVR ; 100.85 0.0014511 2742800000 3900000 4354500 4329800 2404200 6739800 4381100 5654400 5576200 3893900 5922300 TRUE FALSE FALSE 3626630.14 4009433.561 6006414.516 5597099.102 5894431.438 3840604.426 4239609.314 4306620.988 4231426.387 4439317.532 0.81693416 0.903164401 1.353004031 1.260801702 1.32777874 0.865133976 0.955013757 0.970108796 0.953170472 1 22.08190647 -6.28328022 24.95476248 0.947212723 1.139001096 0.240352635 0.163021391 1297.084684 1482009.356 0.063686503 0.056213769 5.21E-07 6.28328022 0.191788373 RKAS(ph)PEPEGEAAGK ddPTM_HeLa_A485_30min_R1 1 RKASPEPEGEAAGK 14 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 RKAS(1)PEPEGEAAGK 102.98 0.00034525 1014700000 554520 511750 343560 730020 671670 722520 1058200 1152000 491080 965700 TRUE FALSE FALSE 677871.0609 571594.7109 470657.1407 769899.1441 604796.1764 760350.03 832106.9253 869470.1937 589635.2515 724968.7624 0.935034854 0.788440469 0.649210235 1.061975611 0.834237567 1.048803851 1.147783144 1.199320907 0.813325045 1 19.46755931 -5.84370089 1.32825649 1.056876579 0.808945512 0.303569229 0.13836828 0.484457725 1.791090807 0.055979462 0.073128435 1.43E-06 5.84370089 -0.247931067 RKAS(ph)PEPEGEAAGK ddPTM_HeLa_A486_30min_R1 1 RKASPEPEGEAAGK 14 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 RKAS(1)PEPEGEAAGK 94.856 0.00075117 479900000 548740 452900 224600 247440 431440 518760 707170 664720 333200 835820 TRUE FALSE FALSE 510276.1597 417010.5546 311571.135 576052.8249 377324.7722 454760.6656 530228.5863 513377.7667 362082.0443 626525.2317 0.814454285 0.665592595 0.497300219 0.919440744 0.602249922 0.725845732 0.846300451 0.819404775 0.57792093 1 19.25701309 -14 0.291278419 3.175046966 0.704486485 0.292285356 0.12823668 320.8032905 3.022842157 424.585777 0.135069076 1.00E-14 14 -2.470560481 RKAS(ph)PEPPDSAEGALK ddPTM_HeLa_A485_30min_R1 2 RKASPEPPDSAEGALK 16 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RKAS(1)PEPPDSAEGALK;RKAS(0.88)PEPPDS(0.12)AEGALK ; 162.85 3.14E-12 1879250000 1886310 1554990 1018300 2159420 1921950 2054030 3121000 2721320 1498870 3055800 TRUE FALSE FALSE 2305913.152 1736832.554 1395011.545 2277383.647 1730593.91 2161575.835 2454172.854 2053912.003 1799679.461 2294045.298 1.00517333 0.757104734 0.608101133 0.992737 0.754385239 0.94225508 1.069801392 0.895323211 0.784500403 1 21.12946245 -6.281778807 23.10530781 0.940047842 0.817247073 0.16654287 0.128083625 569.9336348 647433.0496 0.045800255 0.040458189 5.23E-07 6.281778807 -0.12280077 RKAS(ph)PEPPDSAEGALK ddPTM_HeLa_A486_30min_R1 2 RKASPEPPDSAEGALK 16 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RKAS(0.853)PEPPDS(0.147)AEGALK;RKAS(0.995)PEPPDS(0.005)AEGALK ; 161.47 5.41E-12 1271220000 1263790 1047390 497000 581290 1007420 1264530 1668720 1555640 801870 1797020 TRUE FALSE FALSE 1175204.847 964391.0019 689451.7101 1353272.497 881059.9898 1108525.145 1251188.606 1201454.731 871376.7372 1347034.495 0.872438569 0.715936381 0.511829291 1.004630914 0.654073814 0.822937459 0.928846745 0.891925734 0.646885243 1 20.36135537 -6.5105161 23.66079638 0.860477375 0.749306728 0.119772055 0.14754045 677.0973493 1295901.018 0.052724736 0.044149941 3.09E-07 6.5105161 -0.111170648 RKAS(ph)PEPPDSAEGALKLGEEQQR ddPTM_HeLa_A485_30min_R1 1 RKASPEPPDSAEGALKLGEEQQR 23 3 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RKAS(0.95)PEPPDS(0.05)AEGALKLGEEQQR 76.294 0.03443 174780000 57852 115140 50887 31802 111540 180560 248600 503700 63628 60537 TRUE FALSE FALSE 70720.97781 128604.6214 69712.21888 33539.26273 100434.686 190013.8424 195484.5791 380166.7852 76397.55597 45446.24 1.556145851 2.829818736 1.533949099 0.737998627 2.209966896 4.181068498 4.301446701 8.365197764 1.681053393 1 15.47187332 -6.234654523 3.5621571 4.425181198 1.713440231 0.216778458 1.925971357 0.2997965 8.138688197 0.662742431 0.631630942 5.83E-07 6.234654523 -2.711740967 RKASPEPPDS(ph)AEGALK ddPTM_HeLa_A486_30min_R1 1 RKASPEPPDSAEGALK 16 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RKAS(0.367)PEPPDS(0.633)AEGALK 131.56 9.94E-06 839060000 862980 751280 348740 372560 725920 847280 1135400 1037800 588830 1303600 TRUE FALSE FALSE 802489.5584 691745.8367 483781.4676 867338.5081 634868.3447 742751.2081 851310.911 801515.595 639870.2585 977170.075 0.821238369 0.707907307 0.495084203 0.887602404 0.649700969 0.760104333 0.87120035 0.82024165 0.654819744 1 19.89825016 -6.532750397 8.30632317 0.820958907 0.709201793 0.176116068 0.124880762 0.282379305 145.7941852 0.046068713 0.0365519 2.93E-07 6.532750397 -0.111757114 RKDPLTHTS(ph)NSLPR ddPTM_HeLa_A485_30min_R1 1 RKDPLTHTSNSLPR 14 2 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0 A0A2R8Y7K2 SPAST Spastin 1 0 RKDPLT(0.061)HT(0.073)S(0.433)NS(0.433)LPR 50.079 0.037945 110420000 23087 45997 34850 20554 44299 34189 35590 51438 32926 24588 TRUE FALSE FALSE 28222.6235 51375.94903 47742.46523 21676.81297 39888.43602 35979.08317 27985.90576 38822.74985 39533.94618 18458.66411 1.52896349 2.783297249 2.586452895 1.174343541 2.160960066 1.94917048 1.516139282 2.10322641 2.141755544 1 14.17201053 -11.01452413 0.283564618 3.52E-20 2.100661324 0.279828299 0.468131226 45.12390046 1.922639488 31.60952146 0.573692699 9.67E-12 11.01452413 2.100661324 RKDPLTHTSNS(ph)LPR ddPTM_HeLa_A485_30min_R1 2 RKDPLTHTSNSLPR 14 2 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0 A0A2R8Y7K2 SPAST Spastin 1 0 RKDPLTHTS(0.028)NS(0.971)LPR;RKDPLTHTS(0.251)NS(0.749)LPR ; 189.56 5.16E-18 1901950000 1517840 3040000 2491000 623370 3222600 2387400 2737300 3481400 2275200 1440800 TRUE FALSE FALSE 1855478.272 3395501.556 3412524.559 657423.1246 2901746.629 2512400.572 2152453.493 2627581.191 2731811.771 1081635.076 1.715438333 3.139230255 3.154968469 0.607804924 2.682740874 2.322780232 1.989999715 2.429267735 2.52563164 1 20.04478241 -10.36968977 3.306175035 0.989346119 2.29501114 0.230882477 0.703573029 170103802.5 225013253.9 17308020.27 0.179020122 4.27E-11 10.36968977 1.305665022 RKDPLTHTSNS(ph)LPR ddPTM_HeLa_A486_30min_R1 3 RKDPLTHTSNSLPR 14 2 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0 A0A2R8Y7K2 SPAST Spastin 1 0 RKDPLTHTS(0.005)NS(0.995)LPR;RKDPLTHT(0.002)S(0.216)NS(0.782)LPR;RKDPLTHTS(0.18)NS(0.82)LPR ;; 159.95 3.89E-12 1775230000 3102050 2512030 2324460 182966 3305990 1835340 2067720 2255600 2418260 1104840 TRUE FALSE FALSE 2884612.314 2312967.594 3224553.163 425954.0946 2891321.907 1608914.411 1550354.586 1742049.119 2627876.724 828180.8727 3.483070437 2.792829043 3.893537353 0.51432496 3.49117204 1.942708971 1.871999991 2.103464565 3.173071017 1 19.65958636 -5.217827897 24.99968223 2.112480056 3.330113983 0.340938769 0.867963836 571.0426596 327341.5809 0.222034141 0.384571189 6.06E-06 5.217827897 1.217633927 RKDREDS(ph)PER ddPTM_HeLa_A486_30min_R1 2 RKDREDSPER 10 3 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 0 RKDREDS(1)PER;RKDREDS(1)PER ; 127.02 0.00059396 37073000 26138 12336.7 20031.7 11608.5 12824.9 41390 22057.5 25639.2 44550 45611 TRUE FALSE FALSE 24305.86118 11359.09496 27788.51071 27025.17466 11216.28145 36283.72262 16538.4802 19801.71386 48411.62987 34189.70872 0.710911619 0.332237255 0.812774128 0.790447643 0.328060164 1.061246907 0.483726853 0.579171762 1.415970819 1 15.06127451 -7.752070568 24.99235678 1.207985437 0.63680734 0.490344065 0.232716443 135.6017036 361739.4593 0.153681878 0.056360423 1.77E-08 7.752070568 -0.571178096 RKDSEEEAAS(ph)PEGK ddPTM_HeLa_A485_30min_R1 3 RKDSEEEAASPEGK 14 2 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 RKDSEEEAAS(1)PEGK;RKDS(0.026)EEEAAS(0.974)PEGK;RKDSEEEAAS(1)PEGK ;; 194.19 3.05E-18 739020000 379740 305099 199850 641320 440690 431540 706320 723620 339730 849250 TRUE FALSE FALSE 464211.8529 340777.674 273782.8315 676353.6877 396813.3562 454134.7671 555408.9619 546151.0604 407910.6948 637547.6043 0.728121084 0.5345133 0.429431198 1.060867742 0.622405846 0.712315071 0.871164691 0.856643577 0.639812136 1 19.28217354 -4.793731667 0.073692858 1.308739922 6.18E-13 0.247671327 0.165599722 128.2829287 1.810056235 9.954845051 23.89484294 1.61E-05 4.793731667 -1.308739922 RKDSEEEAAS(ph)PEGK ddPTM_HeLa_A486_30min_R1 4 RKDSEEEAASPEGK 14 2 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 RKDSEEEAAS(1)PEGK;RKDSEEEAAS(1)PEGK;RKDSEEEAAS(1)PEGK;RKDSEEEAAS(1)PEGK ;;; 161.35 3.59E-12 688510000 1171810 1034720 440830 720140 900281 1339760 1762220 1587830 819747 2076340 TRUE FALSE FALSE 1089672.17 952725.0188 611531.1818 1676522.314 787359.3622 1174474.033 1321293.917 1226315.771 890803.33 1556410.949 0.700118546 0.612129476 0.392911128 1.077172012 0.505881408 0.754604067 0.848936406 0.787912583 0.572344554 1 20.5697916 -14 0.121571774 1.929153586 0.562001851 0.199373917 0.182236655 250.0001789 1.959200872 57.7986827 1.663593034 1.00E-14 14 -1.367151735 RKEAS(ph)SS(ph)EEPR ddPTM_HeLa_A486_30min_R1 2 RKEASSSEEPR 11 2 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 2 0 RKEAS(0.967)S(0.094)S(0.939)EEPR;RKEAS(0.773)S(0.366)S(0.861)EEPR ; 91.789 0.0093266 1105310000 1971690 1702000 1260420 1073450 1942990 2193320 2816800 2466500 1539220 3217800 TRUE FALSE FALSE 1833484.713 1567127.321 1748488.379 2499045.849 1699282.077 1922730.478 2112006.847 1904931.793 1672640.829 2412041.936 0.760137992 0.649709816 0.72489966 1.036070647 0.704499392 0.79713808 0.875609506 0.789758986 0.69345429 1 21.20182356 -11.45327291 2.247224684 3.250197047 0.784456508 0.28318172 0.104296268 4203553.45 381868.0816 48577764 0.027236506 3.52E-12 11.45327291 -2.465740539 RKEAS(ph)SSEEPR ddPTM_HeLa_A485_30min_R1 1 RKEASSSEEPR 11 2 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 RKEAS(0.921)S(0.057)S(0.022)EEPR 84.41 0.0030678 98226000 194710 244880 143670 225380 177190 254840 298110 429240 221280 307860 TRUE FALSE FALSE 238022.5678 273516.5858 196819.5116 237691.9387 159548.3414 268183.0283 234416.3632 323968.217 265688.8663 231116.1677 1.029882808 1.183459333 0.851604254 1.028452233 0.690338296 1.160381945 1.014279379 1.401754884 1.149590134 1 17.81825866 -6.779145853 2.220359445 1.196106242 0.971391623 0.203988468 0.163784741 0.424205372 4.27641236 0.079089364 0.05089678 1.66E-07 6.779145853 -0.224714619 RKEASS(ph)S(ph)EEPR ddPTM_HeLa_A485_30min_R1 1 RKEASSSEEPR 11 2 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 2 0 RKEAS(0.066)S(0.945)S(0.99)EEPR 99.927 0.0051463 575670000 744310 826420 631220 1048000 987580 1004700 1320700 1489200 806190 1417500 TRUE FALSE FALSE 909879.1917 923062.6301 864734.5453 1105249.586 889253.0676 1057304.538 1038521.656 1123971.365 967984.9382 1064143.337 0.85503443 0.867423211 0.812610966 1.038628489 0.835651586 0.993573423 0.975922716 1.056221776 0.909637738 1 20.02126106 -5.505462988 0.686745847 0.992992937 0.831970767 0.380886259 0.066400364 0.970075554 0.890070288 0.037303663 0.096564072 3.12E-06 5.505462988 -0.16102217 RKEASS(ph)SEEPR ddPTM_HeLa_A485_30min_R1 1 RKEASSSEEPR 11 2 P30414 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 RKEAS(0.359)S(0.549)S(0.092)EEPR 82.55 0.0039138 131410000 249200 299530 165340 284910 196140 302190 376400 525350 245380 341450 TRUE FALSE FALSE 304633.6803 334557.4279 226506.1464 300473.9119 176611.6129 318012.2011 295979.0651 396507.0888 294625.5152 256332.7989 1.188430359 1.30516824 0.883640905 1.17220236 0.688993424 1.240622357 1.154667161 1.546844924 1.149386721 1 17.96765856 -6.469911554 24.99940753 1.249632384 1.050296644 0.137244386 0.20662401 579.6105966 273564.2034 0.07229918 0.063761445 3.39E-07 6.469911554 -0.19933574 RKEDEVEEWQHR ddPTM_HeLa_A485_30min_R1 4 RKEDEVEEWQHR 12 2 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;; ;;; 184.1 5.10E-13 3752030000 2347531 2234400 1600914 2628780 2212117 2294970 2682530 3269530 1918511 3718210 FALSE FALSE TRUE 2869731.172 2495693.643 2193158.708 2772383.595 1991870.864 2415131.081 2109385.551 2467672.641 2303538.56 2791328.676 1.028087877 0.894088061 0.785704216 0.993212881 0.713592377 0.865226335 0.755692287 0.884049472 0.825248055 1 21.41252058 -4.323045393 3.23174686 0.845344376 1.042629015 0.258596566 0.087940813 0.346887553 5.89833043 0.020781914 0.156170051 4.75E-05 4.323045393 0.197284639 RKEDEVEEWQHR ddPTM_HeLa_A486_30min_R1 4 RKEDEVEEWQHR 12 2 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;; ;;; 196.38 2.20E-14 3541360000 3594530 2513290 1904860 1450300 3222320 3221330 3298950 2964790 1827650 4100070 FALSE FALSE TRUE 3342572.009 2314127.747 2642472.806 3376371.694 2818146.579 2823915.057 2473517.817 2289772.038 1986072.174 3073385.785 1.087586214 0.752957132 0.859792096 1.098583754 0.916951784 0.918828697 0.804818526 0.745032416 0.64621636 1 21.55139744 -6.793607439 3.232589967 0.771808482 0.93532777 0.223343649 0.125600605 0.348272815 7.486424338 0.055340868 0.037315203 1.61E-07 6.793607439 0.163519288 RKEDSLTAS(ph)QRK ddPTM_HeLa_A485_30min_R1 1 RKEDSLTASQRK 12 3 A0A0G2JNT0;E5RIQ9;D6RC42;D6RC90;E5RHJ0;D6RCL9;O75920-2;O75920 A0A0G2JNT0 SERF1A;SERF1B Small EDRK-rich factor 1 1 0 RKEDS(0.098)LT(0.098)AS(0.805)QRK 91.812 0.011468 61465000 68199 55282 30737 58104 71087 68717 123380 149970 102190 132240 TRUE FALSE FALSE 83369.63227 61746.74901 42107.89537 61278.07439 64009.32868 72314.91586 97018.85508 113189.6224 122698.5957 99275.0017 0.839784748 0.621976811 0.424154063 0.617255838 0.644767843 0.728430266 0.977273769 1.140162381 1.235946548 1 16.59914286 -6.809690626 1.875665555 1.144143512 0.616156419 0.807274546 0.108342427 0.144044972 1.033501814 0.060288045 0.036417335 1.55E-07 6.809690626 -0.527987093 RKEEAKES(ph)PSAAGPEDK ddPTM_HeLa_A485_30min_R1 4 RKEEAKESPSAAGPEDK 17 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RKEEAKES(0.723)PS(0.277)AAGPEDK;RKEEAKES(0.84)PS(0.16)AAGPEDK;RKEEAKES(0.5)PS(0.5)AAGPEDK;RKEEAKES(0.91)PS(0.09)AAGPEDK ;;; 252.47 1.44E-50 908590000 864370 486882 265416 1530350 795850 760930 1483300 1284830 531858 2135960 TRUE FALSE FALSE 1056646.124 543818.6146 363604.4233 1613949.145 716612.3796 800771.1182 1166380.838 969723.428 638597.0221 1603504.481 0.658960506 0.339143807 0.2267561 1.006513648 0.446903883 0.499388139 0.72739481 0.604752552 0.39825085 1 20.61279696 -14 0.355749597 6.395715977 0.533274682 0.290170326 0.210756051 616.2535563 4.986414619 2542.668876 0.160049562 1.00E-14 14 -5.862441295 RKEEAKES(ph)PSAAGPEDK ddPTM_HeLa_A486_30min_R1 3 RKEEAKESPSAAGPEDK 17 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RKEEAKES(0.859)PS(0.141)AAGPEDK;RKEEAKES(0.998)PS(0.002)AAGPEDK;RKEEAKES(0.999)PS(0.001)AAGPEDK ;; 251.12 1.50E-42 804600000 673240 500180 194518 488015 435140 753350 1019940 938290 402080 1264800 TRUE FALSE FALSE 626049.3526 460543.9152 269840.579 1136123.583 380560.6837 660409.3365 764740.2242 724661.8497 436932.6181 948085.8475 0.660329815 0.485761829 0.284616187 1.198334081 0.401398971 0.696571242 0.806614956 0.764342018 0.460857653 1 19.85465817 -14 0.131023698 2.093866502 0.509152654 0.152963944 0.2459934 279.8091624 2.30291921 81.84878578 1.81271997 1.00E-14 14 -1.584713848 RKEEAKESPS(ph)AAGPEDK ddPTM_HeLa_A486_30min_R1 1 RKEEAKESPSAAGPEDK 17 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RKEEAKES(0.202)PS(0.798)AAGPEDK 181.61 8.10E-17 266060000 188530 135630 39569 168120 122870 219770 334240 288520 109100 360120 TRUE FALSE FALSE 175315.0206 124882.1848 54891.17649 391391.8563 107458.4989 192657.0119 250609.6168 222830.2943 118556.8758 269943.608 0.649450535 0.462623234 0.203343124 1.449902293 0.398077582 0.71369355 0.928377666 0.825469793 0.439191269 1 18.04229853 RKEENFSS(ph)PK ddPTM_HeLa_A485_30min_R1 1 RKEENFSSPK 10 2 C9JEF0;A0A087WWI9;A0A0A0MRY1;C9JMN1;Q96SB8;Q96SB8-2 C9JEF0 SMC6 Structural maintenance of chromosomes protein 6 1 0 RKEENFS(0.021)S(0.979)PK 69.716 0.0063336 222960000 105770 102200 60742 154540 111250 109820 180800 158680 84547 194550 TRUE FALSE FALSE 129298.1716 114151.401 83212.99349 162982.1289 100173.5594 115570.0054 142170.603 119763.4812 101514.8074 146052.2654 0.885286998 0.781579119 0.56974805 1.115916473 0.685874739 0.791292111 0.973422785 0.820004269 0.695058081 1 17.15612521 -10.18261789 3.953975096 1.000089234 0.814481925 0.128263897 0.14611151 30448292.28 15682633.22 26937.13678 0.034184344 6.57E-11 10.18261789 -0.18560731 RKEENFSS(ph)PK ddPTM_HeLa_A486_30min_R1 1 RKEENFSSPK 10 2 C9JEF0;A0A087WWI9;A0A0A0MRY1;C9JMN1;Q96SB8;Q96SB8-2 C9JEF0 SMC6 Structural maintenance of chromosomes protein 6 1 0 RKEENFS(0.021)S(0.979)PK 92.856 0.0012549 175900000 122920 110320 42261 79289 92049 116960 173830 150310 66611 246130 TRUE FALSE FALSE 114303.9428 101577.8414 58625.59099 184588.799 80503.3561 102530.6644 130335.8954 116087.6942 72384.89511 184497.446 0.619542141 0.550565028 0.317758279 1.000495146 0.436338594 0.555729451 0.706437397 0.629210305 0.392335486 1 17.49324132 -10.1727726 4.108840846 1.000164306 0.582993226 0.330652904 0.179727736 235841303.9 573526978.2 551429.1998 0.043182774 6.72E-11 10.1727726 -0.41717108 RKELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_A485_30min_R1 2 RKELEEVSPETPVVPATTQR 20 2 Q15149 Q15149 PLEC Plectin 1 0 RKELEEVS(0.993)PET(0.007)PVVPATTQR;RKELEEVS(1)PETPVVPATTQR ; 215.42 3.61E-29 1240470000 695080 806160 622900 784160 1028680 1040200 1178340 1377910 685010 1164910 TRUE FALSE FALSE 849698.148 900433.3993 853336.631 826996.6752 926261.0073 1094663.264 926578.0328 1039975.412 822485.2237 874519.3756 0.971617293 1.029632304 0.975777844 0.945658493 1.059165792 1.251731287 1.059528306 1.189196536 0.940499715 1 19.73813082 -5.968774492 7.913583705 1.104483414 0.985693311 0.253037921 0.085162454 0.262718332 55.51195386 0.025534914 0.028784532 1.07E-06 5.968774492 -0.118790103 RKELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_A486_30min_R1 5 RKELEEVSPETPVVPATTQR 20 2 Q15149 Q15149 PLEC Plectin 1 0 RKELEEVS(1)PETPVVPATTQR;RKELEEVS(0.999)PET(0.001)PVVPATTQR;RKELEEVS(1)PETPVVPATTQR;RKELEEVS(0.998)PET(0.002)PVVPATTQR;RKELEEVS(0.971)PET(0.029)PVVPATTQR ;;;; 206.32 1.31E-26 2630500000 2146140 1887410 1292790 923109 2260200 1972770 2532950 2654040 1459260 2624760 TRUE FALSE FALSE 1995706.669 1737844.758 1793392.91 2149044.403 1976704.64 1729389.695 1899179.119 2049773.029 1585749.832 1967503.012 1.014334747 0.883274255 0.911507072 1.092269943 1.004676805 0.878976899 0.965273805 1.04181443 0.805970727 1 20.90793441 -9.384575426 14.20455703 0.999993429 0.958002665 0.024982615 0.082195937 0 0 0.078475391 0.019033078 4.13E-10 9.384575426 -0.041990764 RKGAAS(ph)PVLQEDHCDSLPSVLQVEEK ddPTM_HeLa_A485_30min_R1 1 RKGAASPVLQEDHCDSLPSVLQVEEK 26 2 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 RKGAAS(0.999)PVLQEDHCDS(0.001)LPSVLQVEEK 103.42 0.00037418 212620000 131580 130540 72992 128850 129000 145010 189910 223380 105030 187230 TRUE FALSE FALSE 160849.5171 145805.5175 99994.77825 135888.7492 116156.3071 152602.4994 149334.1771 168595.7048 126108.5576 140557.0067 1.144372101 1.037340798 0.711417955 0.966787444 0.826399977 1.085698272 1.062445627 1.199482749 0.897205771 1 17.10079585 -6.287400558 24.79206478 1.062276616 0.931916711 0.152435776 0.129507482 1203.608441 1149401.853 0.046416509 0.040948581 5.16E-07 6.287400558 -0.130359905 RKGAAS(ph)PVLQEDHCDSLPSVLQVEEK ddPTM_HeLa_A486_30min_R1 1 RKGAASPVLQEDHCDSLPSVLQVEEK 26 2 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 RKGAAS(1)PVLQEDHCDSLPSVLQVEEK 161.13 5.92E-14 199660000 324320 257060 112030 91795 201320 228180 328720 313590 180470 376660 TRUE FALSE FALSE 301586.8428 236689.6294 155411.0163 213703.3991 176068.5684 200029.4716 246470.7792 242192.4026 196113.2849 282341.8844 1.068161897 0.838308599 0.550435571 0.756895845 0.6236006 0.708465455 0.872951527 0.85779835 0.694595084 1 18.10708364 -9.500849176 10.03886578 0.9999995 0.768296884 0.191707274 0.13832067 0 0 0.139045672 0.033723529 3.16E-10 9.500849176 -0.231702616 RKGDEPQASGYHS(ph)EGETLKEK ddPTM_HeLa_A485_30min_R1 1 RKGDEPQASGYHSEGETLKEK 21 3 H7C296;H7C1E9;Q70EL1-6;Q70EL1-7;Q70EL1 H7C296 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 0 RKGDEPQASGYHS(0.997)EGET(0.002)LKEK 76.198 0.0041118 107470000 43315 41383 31066 48543 59219 56554 88738 106450 38779 77394 TRUE FALSE FALSE 52950.27232 46222.38187 42558.60616 51194.78117 53322.94843 59515.07999 69778.40138 80342.97059 46561.5896 58101.10013 0.911347155 0.795550889 0.73249226 0.881132733 0.917761425 1.024336542 1.200982446 1.382813241 0.801389122 1 15.82627786 -6.192664418 1.873510975 1.124912629 0.820444915 0.396841874 0.146675887 0.316166168 2.188557111 0.058212715 0.05592526 6.42E-07 6.192664418 -0.304467714 RKGS(ph)DDAPYSPTAR ddPTM_HeLa_A486_30min_R1 1 RKGSDDAPYSPTAR 14 2 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 RKGS(1)DDAPYSPTAR 84.829 0.0036379 0 70182 49146 40344 30110 55503 50486 67586 71138 47596 78915 TRUE FALSE FALSE 65262.60422 45251.49197 55966.27725 70097.60168 48541.2962 44257.55062 50675.26795 54941.43033 51721.6596 59154.17035 1.103262946 0.764975516 0.946108734 1.184998475 0.820589587 0.748172958 0.856664334 0.928783719 0.874353563 1 15.85219226 RKGS(ph)DDDGGDSPVQDIDTPEVDLYQLQVNTLR ddPTM_HeLa_A485_30min_R1 2 RKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLR 32 2 O75446 O75446 SAP30 Histone deacetylase complex subunit SAP30 1 0 RKGS(0.838)DDDGGDS(0.162)PVQDIDT(0.001)PEVDLYQLQVNTLR;RKGS(0.896)DDDGGDS(0.093)PVQDIDT(0.01)PEVDLY(0.001)QLQVNTLR ; 156.72 1.88E-10 114799000 37410 42264 31154 47866 51823 39988 56553 50542 37567 69130 TRUE FALSE FALSE 45731.72544 47206.40715 42679.16103 50480.79838 46663.32016 42081.70985 44469.98955 38146.49525 45106.35232 51897.16324 0.881198944 0.909614403 0.822379459 0.972708241 0.899149727 0.810867246 0.856886712 0.735040084 0.869148707 1 15.66336806 -6.243336067 22.09219841 0.837984695 0.897769717 0.059330967 0.071152412 358.9620923 438054.0639 0.022433863 0.022363574 5.71E-07 6.243336067 0.059785022 RKGS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_A485_30min_R1 11 RKGSGSEQEGEDEEGGER 18 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER ;;;;;;;;;; 172.75 1.21E-12 7402851000 4365686 3989945 3062878 6417332 5414620 4991585 7513844 7645211 3799600 8062686 TRUE FALSE FALSE 5336817.789 4456534.36 4195964.029 6767894.598 4875521.421 5252936.672 5908449.847 5770211.015 4562144.868 6052806.763 0.881709593 0.736275671 0.693226167 1.118141527 0.805497617 0.867851375 0.976150417 0.953311619 0.753723858 1 22.52917286 -5.219074901 24.99947133 0.917785243 0.766991 0.305497582 0.106364316 608.8970306 359312.1489 0.028083382 0.048641369 6.04E-06 5.219074901 -0.150794244 RKGS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_A486_30min_R1 8 RKGSGSEQEGEDEEGGER 18 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER;RKGS(1)GS(1)EQEGEDEEGGER ;;;;;;; 198.39 2.58E-25 11534490000 6497490 6185580 3359280 4022270 6343520 7509400 9707960 9051610 5064060 10462150 TRUE FALSE FALSE 6042049.504 5695412.113 4660083.181 9364047.834 5547856.571 6582966.578 7278925.728 6990755.998 5503016.798 7842359.543 0.770437707 0.726237057 0.594219527 1.194034497 0.707421859 0.839411473 0.928155065 0.89140978 0.701704222 1 22.90285635 RKGS(ph)GS(ph)EQEGEDEEGGERK ddPTM_HeLa_A485_30min_R1 2 RKGSGSEQEGEDEEGGERK 19 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 RKGS(1)GS(1)EQEGEDEEGGERK;RKGS(1)GS(1)EQEGEDEEGGERK ; 86.211 0.00044727 593930000 257030 191472 155471 323640 308580 264700 408740 398810 211644 442100 TRUE FALSE FALSE 314205.4368 213862.9848 212986.1926 341319.6337 277856.6917 278559.2827 321409.3599 301001.2222 254119.0095 331892.6062 0.946708155 0.644374056 0.641732261 1.028403849 0.837188556 0.839305478 0.968413739 0.906923555 0.765666377 1 18.34035696 -5.253681841 24.99071866 0.899564 0.734281752 0.315308296 0.108952148 700.5316499 2256740.679 0.029198054 0.049368489 5.58E-06 5.253681841 -0.165282248 RKGS(ph)GS(ph)EQEGEDEEGGERK ddPTM_HeLa_A486_30min_R1 2 RKGSGSEQEGEDEEGGERK 19 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 RKGS(1)GS(1)EQEGEDEEGGERK;RKGS(1)GS(1)EQEGEDEEGGERK ; 101.5 0.00011023 729270000 340310 311770 151474 258220 296920 401770 542050 528070 261800 623140 TRUE FALSE FALSE 316456.0264 287064.2098 210128.7894 601149.2097 259677.5249 352203.7023 406423.3568 407839.9887 284493.0348 467101.688 0.677488509 0.614564702 0.449856626 1.286977172 0.555933604 0.754019331 0.870096099 0.873128912 0.609060173 1 18.83337713 -1.788130393 0.096159472 1.053849098 2.06E-26 0.116136667 0.220081957 277.9119371 2.254276204 3.502692944 38.51127511 0.016288069 1.788130393 -1.053849098 RKGS(ph)QITQQSTNQSR ddPTM_HeLa_A485_30min_R1 2 RKGSQITQQSTNQSR 15 2 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 RKGS(1)QITQQSTNQSR;RKGS(0.995)QIT(0.004)QQS(0.001)TNQSR ; 94.057 0.00067875 377930000 74429 106341 74070 72713 100663 128096 142622 189284 78587 108859 TRUE FALSE FALSE 90985.47427 118776.6549 101471.5753 76685.12707 90640.63827 134802.9085 112149.6446 142861.8022 94358.69006 81722.4547 1.1133473 1.453415164 1.241660884 0.938360544 1.109127701 1.64952104 1.372323494 1.748134007 1.154623786 1 16.31844492 -6.23761137 24.83860762 1.430891563 1.17784284 0.155865283 0.2366663 1151.430264 1200265.754 0.076498393 0.076460353 5.79E-07 6.23761137 -0.253048722 RKGS(ph)QITQQSTNQSR ddPTM_HeLa_A486_30min_R1 1 RKGSQITQQSTNQSR 15 2 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 RKGS(1)QITQQSTNQSR 166.29 3.57E-12 112710000 37718 35257 22881 17873 43624 33687 49603 48272 30274 43349 TRUE FALSE FALSE 35074.16298 32463.10692 31741.13597 41609.24725 38152.27114 29531.04044 37191.80475 37281.51937 32898.1747 32494.12825 1.079400029 0.999045325 0.97682682 1.280515881 1.174128164 0.908811593 1.144570012 1.14733096 1.012434445 1 14.98789142 -7.901884786 8.211225544 1.000291915 1.087103053 0.095637953 0.101824485 0.612197752 42.49579242 0.102257517 0.026444875 1.25E-08 7.901884786 0.086811138 RKGTDVNVFNTILTTR ddPTM_HeLa_A485_30min_R1 2 RKGTDVNVFNTILTTR 16 2 P04083 P04083 ANXA1 Annexin A1 0 0 ; ; 132.59 7.17E-06 19315800 45236 70046 46791 34664 65328 66732 85684 117636 41305 55357 FALSE FALSE TRUE 55298.59214 78237.27038 64100.93804 36557.60655 58823.71494 70225.98433 67376.91343 88785.58655 49594.53463 41557.51867 1.330651923 1.882626126 1.542463075 0.879686943 1.415477074 1.689850275 1.621292983 2.136450621 1.193394991 1 15.3428219 -6.241573878 21.23070107 1.605044346 1.414304925 0.003831673 0.367960245 398.2488517 425614.2339 0.122407684 0.122101559 5.73E-07 6.241573878 -0.190739421 RKHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_A485_30min_R1 4 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR ;;; 163.8 4.25E-12 4496560000 2281530 2368960 1768950 2647850 2941060 2815420 4054070 4568170 2168440 3511650 TRUE FALSE FALSE 2789048.477 2645989.265 2423358.217 2792495.341 2648237.74 2962831.038 3187884.826 3447819.145 2603626.018 2636260.282 1.057956415 1.003690448 0.919240878 1.059263897 1.004543352 1.123876522 1.209245099 1.307844741 0.987621001 1 21.33006139 -6.320295119 3.887160434 1.153398542 1.005655556 0.252931771 0.095526014 0.267880186 8.24124687 0.034126233 0.030439863 4.78E-07 6.320295119 -0.147742986 RKHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_A486_30min_R1 2 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(0.998)PPPPT(0.001)PTESR ; 195.09 9.12E-19 1721400000 1018350 1006410 638830 423456 1081240 1005410 1245760 1264400 761000 1359170 TRUE FALSE FALSE 946968.9238 926658.4063 886202.0845 985826.9683 945620.797 881372.7365 934057.6717 976523.7217 826964.0927 1018824.985 0.929471634 0.909536397 0.869827593 0.967611692 0.928148417 0.865087477 0.916798945 0.958480343 0.811684151 1 19.95847481 -10.69823786 2.946623108 1.011809276 0.908395024 0.285922081 0.044314202 56431204.02 47464562.52 4913735.065 0.0106052 2.00E-11 10.69823786 -0.103414252 RKHS(ph)PSPPPPTPTESR ddPTM_HeLa_A485_30min_R1 3 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 RKHS(0.807)PS(0.193)PPPPTPTESR;RKHS(0.954)PS(0.046)PPPPTPTESR;RKHS(0.948)PS(0.052)PPPPTPTESR ;; 118.54 3.79E-05 168159000 249156 342796 267322 223936 361582 370611 435576 503859 288684 340810 TRUE FALSE FALSE 304579.8926 382883.0103 366215.532 236169.0566 325581.6265 390015.6189 342511.6293 380286.7902 346620.2308 255852.3391 1.190451858 1.49649994 1.431355028 0.923067803 1.272537228 1.524377773 1.338708219 1.486352603 1.354766706 1 17.9649519 -6.04635513 24.97682724 1.374144012 1.265473828 0.024859613 0.195073239 1297.682365 699207.1927 0.064739048 0.064741173 8.99E-07 6.04635513 -0.108670184 RKHS(ph)PSPPPPTPTESR ddPTM_HeLa_A486_30min_R1 2 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 RKHS(0.751)PS(0.249)PPPPTPTESR;RKHS(0.985)PS(0.015)PPPPTPTESR ; 156.67 7.70E-09 108192000 236730 204019 156663 60664 248800 199204 240840 250920 175126 244400 TRUE FALSE FALSE 220136.4495 187851.7914 217327.1092 141228.8578 217593.184 174628.2358 180579.2847 193790.9935 190306.0627 183200.6492 1.201613916 1.025388241 1.186279143 0.770897147 1.187731512 0.953207516 0.985691292 1.057807351 1.038784871 1 17.48306509 -2.995283288 0.937220823 1.013682474 2.793129332 0.194235366 0.11152718 30.74127831 3.277178602 0.034256982 94.75386519 0.00101092 2.995283288 1.779446858 RKLES(ph)TESR ddPTM_HeLa_A485_30min_R1 1 RKLESTESR 9 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 RKLES(0.863)T(0.134)ES(0.002)R 70.488 0.010339 90041000 101350 116110 74849 100940 108670 115640 145490 163480 88351 112780 TRUE FALSE FALSE 123894.9578 129688.0545 102538.7598 106454.0966 97850.43324 121694.7316 114404.873 123386.2737 106082.2353 84666.02156 1.463337423 1.531760346 1.211096942 1.25734143 1.155722584 1.437350301 1.351248953 1.457329297 1.252949334 1 16.36949548 -8.019563534 20.90114106 0.999999993 1.351573863 0.473892123 0.114224086 146.5981071 156622.8872 0.117907296 0.030443528 9.56E-09 8.019563534 0.35157387 RKLS(ph)GDQPAAR ddPTM_HeLa_A485_30min_R1 3 RKLSGDQPAAR 11 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 RKLS(1)GDQPAAR;RKLS(1)GDQPAAR;RKLS(1)GDQPAAR ;; 160.87 5.30E-08 3078360000 1019530 1827990 1263180 779590 1811210 2015400 2334190 3382780 1363720 1236890 TRUE FALSE FALSE 1246320.931 2041757.529 1730482.847 822177.0277 1630879.573 2120923.228 1835471.238 2553147.901 1637406.095 928556.0863 1.342213949 2.198852131 1.863627704 0.885436044 1.756360867 2.284108907 1.976693993 2.749589323 1.763389546 1 19.82462953 -6.011535823 24.6622792 2.060449966 1.598416703 0.0884658 0.524365456 929.9280606 1988084.19 0.165575448 0.175144144 9.74E-07 6.011535823 -0.462033262 RKLS(ph)GDQPAAR ddPTM_HeLa_A486_30min_R1 1 RKLSGDQPAAR 11 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 RKLS(1)GDQPAAR 178.51 1.60E-10 739030000 537690 377230 334240 212700 567810 397810 626690 602080 313830 673050 TRUE FALSE FALSE 500000.7076 347336.921 463666.6793 495176.3493 496589.9752 348732.2468 469885.5335 464999.5273 341033.0371 504513.8992 0.991054376 0.688458577 0.919036482 0.981491987 0.984293943 0.69122426 0.931362911 0.921678329 0.675963611 1 18.94453449 RKPEEES(ph)PR ddPTM_HeLa_A485_30min_R1 9 RKPEEESPR 9 2 P49321;P49321-3;P49321-4;P49321-2;H0YF33;Q5T624 P49321 NASP Nuclear autoantigenic sperm protein 1 0 RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR ;;;;;;;; 150.06 3.22E-05 3616549000 4408370 3872410 1592476 4986740 1447995 3805620 2994200 3751060 2897030 4785230 TRUE FALSE FALSE 5388996.698 4325254.664 2181599.141 5259152.979 1303827.534 4004876.379 2354464.71 2831106.654 3478437.348 3592360.227 1.500127036 1.20401474 0.607288524 1.463982632 0.362944541 1.114831511 0.655408857 0.788090969 0.968287457 1 21.77650059 -4.544711068 5.189658967 0.866781209 1.440191245 0.332543212 0.286957539 0.1642665 12.39539037 0.06804059 0.208770611 2.85E-05 4.544711068 0.573410035 RKPEEES(ph)PR ddPTM_HeLa_A486_30min_R1 5 RKPEEESPR 9 2 P49321;P49321-3;P49321-4;P49321-2;H0YF33;Q5T624 P49321 NASP Nuclear autoantigenic sperm protein 1 0 RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR;RKPEEES(1)PR ;;;; 142.08 5.31E-05 810350000 1686160 614670 984210 588536 470363 2383010 954430 792340 1706850 2210130 TRUE FALSE FALSE 1567968.891 565961.3106 1365322.47 1370141.551 411365.6866 2089018.455 715621.5191 611941.4787 1854801.132 1656699.062 0.946441588 0.341619865 0.824122196 0.827031041 0.248304412 1.260952277 0.431956253 0.369373951 1.119576376 1 20.65988013 -7.783646076 24.87847245 1.059788747 0.656112993 0.222154366 0.302057965 378.0218614 423490.619 0.275901649 0.071471369 1.65E-08 7.783646076 -0.403675754 RKPNAGGS(ph)PAPVR ddPTM_HeLa_A485_30min_R1 7 RKPNAGGSPAPVR 13 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR ;;;;;; 155.57 1.23E-08 11473324000 3524715 4558604 3429061 3125142 4374414 4745738 5398368 6570070 3696618 4513361 TRUE FALSE FALSE 4308775.692 5091693.083 4697613.359 3295860.594 3938881.983 4994217.503 4244962.576 4958750.031 4438495.325 3388263.165 1.27167681 1.502744278 1.386436983 0.972728632 1.162507689 1.47397568 1.252843233 1.463507936 1.309961803 1 21.6921145 -10.05212454 4.021727942 0.999952927 1.311879223 0.270999115 0.152870858 80003013.33 116874447.6 47805.28433 0.041929867 8.87E-11 10.05212454 0.311926295 RKPNAGGS(ph)PAPVR ddPTM_HeLa_A486_30min_R1 9 RKPNAGGSPAPVR 13 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR;RKPNAGGS(1)PAPVR ;;;;;;;; 129.88 1.20E-05 13972719000 8486327 7051185 5028501 2513072 7700009 6262189 7503503 7593105 6217705 8585443 TRUE FALSE FALSE 7891479.301 6492423.421 6975671.255 5850558.62 6734202.071 5489623.79 5626047.185 5864320.748 6756660.676 6435592.191 1.226224264 1.008830769 1.083920648 0.909094058 1.046399752 0.853009891 0.874208157 0.911232498 1.049889501 1 22.61764148 -1 0.636753829 0.938897016 23.5884251 0.550852155 0.072297674 150.1325549 1.018800332 0.030501882 4777.952829 0.1 1 22.64952808 RKPS(ph)IVTK ddPTM_HeLa_A485_30min_R1 3 RKPSIVTK 8 2 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;A0A087WWG0;A0A096LNL6;A0A096LNL7 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RKPS(1)IVTK;RKPS(1)IVTK;RKPS(1)IVTK ;; 144.17 0.00015864 1686330000 2311960 2424260 1525470 2210900 2396930 2379210 2902780 3102640 1560710 2526020 TRUE FALSE FALSE 2826247.526 2707756.119 2089804.833 2331675.869 2158283.233 2503781.757 2282577.339 2341712.675 1873930.181 1896329.702 1.490377714 1.427893112 1.102026104 1.229573036 1.138137124 1.320330401 1.203681689 1.23486579 0.988187961 1 20.85477839 -1 0.545400416 1.148806023 17.39242693 0.535856403 0.107569782 106.5032839 0.991656015 0.053339075 2022.56804 0.1 1 16.2436209 RKPS(ph)IVTK ddPTM_HeLa_A486_30min_R1 1 RKPSIVTK 8 2 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;A0A087WWG0;A0A096LNL6;A0A096LNL7 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RKPS(1)IVTK 141.08 0.00018486 499440000 866260 741820 381770 292280 764600 767090 851650 814780 551590 966100 TRUE FALSE FALSE 805539.6474 683035.4815 529601.5682 680442.611 668696.7384 672454.235 638558.1622 629272.3805 599402.2653 724182.2717 1.112343782 0.943181721 0.731309767 0.93960131 0.923381812 0.928570418 0.881764422 0.868941985 0.827695304 1 19.46599333 -4.323926145 3.921726744 0.884995127 1.12135033 0.485711997 0.068938247 0.172551431 4.746708367 0.017036639 0.100091073 4.74E-05 4.323926145 0.236355203 RKPS(ph)PEPEGEVGPPK ddPTM_HeLa_A485_30min_R1 8 RKPSPEPEGEVGPPK 15 2 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK ;;;;;;; 180.86 6.91E-18 29671160000 13957350 9028177 8297545 22319210 14086250 13416780 20093290 14839830 12639940 29272320 TRUE FALSE FALSE 17062114.36 10083943.77 11367152.19 23538451.93 12683773.49 14119261.85 15800194.44 11200338.42 15176660.02 21975269.34 0.776423446 0.458876913 0.51727021 1.071133717 0.577183983 0.642506885 0.718998898 0.509679233 0.690624528 1 24.38937751 -8.042237615 22.61512889 1.000000003 0.656327954 0.271906497 0.166342719 3678.551208 1969591.145 0.160658689 0.041481895 9.07E-09 8.042237615 -0.343672049 RKPS(ph)PEPEGEVGPPK ddPTM_HeLa_A486_30min_R1 8 RKPSPEPEGEVGPPK 15 2 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK ;;;;;;; 174.82 1.06E-12 23812330000 11008240 10079670 4691960 4425740 9178870 12341590 14308900 13302030 8518730 16150890 TRUE FALSE FALSE 10236619.22 9280920.24 6508812.567 10303346.38 8027570.535 10819010.11 10728661.88 10273448.15 9257140.375 12106602.02 0.845540244 0.766599928 0.537625054 0.851051878 0.663073794 0.893645474 0.88618275 0.848582297 0.764635722 1 23.52929066 -6.272736276 24.72121049 0.869618993 0.730386086 0.344962542 0.100067372 788.8897279 1726336.941 0.03459682 0.030793166 5.34E-07 6.272736276 -0.139232908 RKPS(ph)VPDSASPADDSFVDPGER ddPTM_HeLa_A485_30min_R1 3 RKPSVPDSASPADDSFVDPGER 22 2 C9K098;C9JVV5;H7C5C7;C9J869;C9JAB9;P16333-2;P16333 C9K098 NCK1 Cytoplasmic protein NCK1 1 0 RKPS(0.877)VPDS(0.059)AS(0.059)PADDS(0.005)FVDPGER;RKPS(0.998)VPDSAS(0.001)PADDSFVDPGER;RKPS(0.997)VPDS(0.003)ASPADDSFVDPGER ;; 194.21 1.53E-20 1652460000 781070 953120 786790 912220 1035060 1107030 1304500 1352740 818260 1209790 TRUE FALSE FALSE 954816.3268 1064579.093 1077856.362 962052.2687 932005.7921 1164992.379 1025782.918 1020978.394 982477.2765 908211.6175 1.051314813 1.17217075 1.186789886 1.059282055 1.026198932 1.282732302 1.129453641 1.124163548 1.081771316 1 19.79266897 -8.077945127 2.113376225 1.000318637 1.13232795 0.237888516 0.070972457 0.604291838 5.967510363 0.069240913 0.019178494 8.36E-09 8.077945127 0.132009314 RKPS(ph)VPDSASPADDSFVDPGER ddPTM_HeLa_A486_30min_R1 2 RKPSVPDSASPADDSFVDPGER 22 2 C9K098;C9JVV5;H7C5C7;C9J869;C9JAB9;P16333-2;P16333 C9K098 NCK1 Cytoplasmic protein NCK1 1 0 RKPS(0.992)VPDS(0.007)AS(0.002)PADDSFVDPGER;RKPS(1)VPDSASPADDSFVDPGER ; 168.11 4.43E-14 709110000 725440 686710 492030 262097 766030 643310 738470 815820 628860 943020 TRUE FALSE FALSE 674590.4022 632292.5986 682557.193 610175.0616 669947.3745 563944.9529 553696.9953 630075.5952 683370.0911 706881.654 0.95431873 0.894481552 0.965589062 0.863192669 0.947750406 0.7977926 0.783295184 0.891345237 0.966739039 1 19.43110917 -5.270423648 24.68315068 0.882105368 0.933764959 0.069906788 0.067575775 1272.9871 3497373.115 0.019493933 0.029374715 5.37E-06 5.270423648 0.051659591 RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK ddPTM_HeLa_A486_30min_R1 1 RKPVLPALTINPTIAEGPSPTSEGASEANLVDLQK 35 2 P36507 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 RKPVLPALTINPTIAEGPS(0.828)PT(0.165)S(0.007)EGASEANLVDLQK 334.78 3.19E-129 905470000 285830 292590 188140 155870 316370 379300 463950 451060 272800 489350 TRUE FALSE FALSE 265794.793 269404.1028 260992.8466 362873.2372 276687.9246 332505.8224 347864.8028 348363.4846 296446.5236 366813.5749 0.724604571 0.734444201 0.711513598 0.989257929 0.754301213 0.906470876 0.948342228 0.949701724 0.80816672 1 18.4846875 -5.245625561 24.91809415 0.901147421 0.724613108 0.574861322 0.072543765 577.9032085 910610.023 0.019235361 0.033176982 5.68E-06 5.245625561 -0.176534313 RKQS(ph)PVPALPIVVQLMEMGFSR ddPTM_HeLa_A486_30min_R1 1 RKQSPVPALPIVVQLMEMGFSR 22 2 O95714 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 0 RKQS(1)PVPALPIVVQLMEMGFSR 43.888 0.026718 103530000 19961 16896 15007 11483 29169 19585 28750 26453 16193 25412 TRUE FALSE FALSE 18561.83698 15557.09943 20818.1123 26733.00432 25510.35203 17168.80183 21556.44591 20430.22936 17596.62228 19048.6698 0.974442687 0.816702667 1.092890607 1.403405309 1.339219604 0.901312376 1.131650984 1.072527876 0.92377171 1 14.21740263 -10.17255002 13.27567489 0.999998125 1.080161203 0.013626522 0.176493879 0 0 0.186537795 0.045242061 6.72E-11 10.17255002 0.080163078 RKRES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_HeLa_A485_30min_R1 4 RKRESESESDETPPAAPQLIK 21 3 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 RKRES(0.563)ES(0.667)ES(0.599)DET(0.17)PPAAPQLIK;RKRES(0.858)ES(0.654)ES(0.482)DET(0.006)PPAAPQLIK;RKRES(0.629)ES(0.729)ES(0.629)DET(0.013)PPAAPQLIK;RKRES(0.719)ES(0.857)ES(0.339)DET(0.084)PPAAPQLIK ;;; 111.84 4.40E-05 1665610000 823690 768810 541188 1033120 1089060 1156800 1705150 1836820 768774 1564710 TRUE FALSE FALSE 1006916.999 858715.6417 741395.9619 1089556.73 980629.3625 1217368.259 1340830.773 1386337.015 923059.8902 1174656.593 0.857201164 0.731035476 0.63115975 0.927553411 0.834822167 1.036360981 1.141466179 1.180206218 0.785812548 1 20.16380762 -5.942561701 1.560700457 1.047095831 0.75317301 0.477006256 0.121988726 0.313701179 1.569837069 0.04793555 0.055863125 1.14E-06 5.942561701 -0.293922821 RKRES(ph)ES(ph)ESDETPPAAPQLIK ddPTM_HeLa_A486_30min_R1 3 RKRESESESDETPPAAPQLIK 21 3 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 RKRES(0.621)ES(0.758)ES(0.621)DETPPAAPQLIK;RKRES(0.902)ES(0.632)ES(0.455)DET(0.011)PPAAPQLIK;RKRES(0.618)ES(0.729)ES(0.625)DET(0.028)PPAAPQLIK ;; 178.39 2.83E-16 1502150000 754160 526300 324560 444150 728450 761330 1122680 1021910 472740 1196680 TRUE FALSE FALSE 701297.2785 484594.0712 450238.324 1034003.646 637081.0085 667404.8452 841773.5895 789243.4011 513717.4838 897023.5389 0.781804767 0.540224476 0.501924759 1.152705142 0.710216601 0.744021552 0.93840747 0.879846924 0.572691197 1 19.77478632 -5.216601774 24.9999332 0.844423714 0.60120862 0.317103697 0.166568719 544.2974693 303481.0962 0.044114571 0.076408231 6.07E-06 5.216601774 -0.243215094 RKRET(ph)DDEGEDD ddPTM_HeLa_A485_30min_R1 8 RKRETDDEGEDD 12 3 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD ;;;;;;; 90.367 0.0013863 3390109000 5146228 4097075 1629191 8017408 2171788 6913672 4050691 4894687 4199983 7118819 TRUE FALSE FALSE 6290988.664 4576192.281 2231896.547 8455378.698 1955557.161 7275661.175 3185227.777 3694257.339 5042881.064 5344228.435 1.177155644 0.856286803 0.41762746 1.582151437 0.365919456 1.361405348 0.596012655 0.691261121 0.943612558 1 22.34955025 RKRET(ph)DDEGEDD ddPTM_HeLa_A486_30min_R1 3 RKRETDDEGEDD 12 3 Q92688 Q92688 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B 1 0 RKRET(1)DDEGEDD;RKRET(1)DDEGEDD;RKRET(1)DDEGEDD ;; 116.06 0.00016298 1414920000 1611930 553682 799652 678659 540401 2673540 1017100 966950 2624520 3007770 TRUE FALSE FALSE 1498942.031 509806.2218 1109298.67 1579952.45 472618.8675 2343705.817 762610.8222 746796.5934 2852015.507 2254604.815 0.664835816 0.226117774 0.492014682 0.70076691 0.209623817 1.039519566 0.338245894 0.331231703 1.264973572 1 21.10444315 -7.763460544 24.9999999 1.132487011 0.500445219 0.512733226 0.246516866 41.50793301 513352.4739 0.193889271 0.059684223 1.72E-08 7.763460544 -0.632041792 RKRS(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A485_30min_R1 2 RKRSPSPSPTPEAK 14 3 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 RKRS(0.997)PS(0.985)PS(0.017)PT(0.001)PEAK;RKRS(0.997)PS(0.99)PS(0.012)PTPEAK ; 130.39 1.17E-05 192824000 58269 116665 62808 72762 185724 221570 358590 772430 102907 130911 TRUE FALSE FALSE 71230.73802 130307.9569 86043.29286 76736.80382 167232.6664 233171.0626 281974.3171 582990.3314 123559.491 98277.29694 0.724793419 1.325921255 0.87551546 0.780819235 1.701640884 2.372583189 2.869170458 5.932095708 1.257253657 1 16.58457056 -6.278656243 1.868071654 3.139288774 0.963466994 0.278880944 1.279236202 0.379387906 2.606682952 0.51403944 0.464732973 5.26E-07 6.278656243 -2.17582178 RKRS(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A486_30min_R1 1 RKRSPSPSPTPEAK 14 3 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 RKRS(0.631)PS(0.716)PS(0.632)PT(0.021)PEAK 50.653 0.030658 51462000 42531 23465 25907 31409 79049 33900 69087 89491 24607 54357 TRUE FALSE FALSE 39549.79653 21605.54794 35938.88421 73121.73932 69133.93732 29717.76267 51800.70187 69115.85287 26739.95457 40745.6534 0.970650689 0.530254055 0.882029891 1.794589931 1.69671932 0.729348046 1.271318473 1.696275483 0.656265205 1 15.31435855 -5.019047732 24.09422723 1.292455069 0.739374663 0.239687315 0.38518356 584.5763019 739456.9617 0.104039258 0.184297634 9.57E-06 5.019047732 -0.553080406 RKRT(ph)PSPS(ph)YQR ddPTM_HeLa_A485_30min_R1 1 RKRTPSPSYQR 11 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 RKRT(0.978)PS(0.391)PS(0.629)Y(0.002)QR 88.951 0.020393 259290000 43548 145870 94048 58145 184120 234760 276780 614810 85563 80544 TRUE FALSE FALSE 53235.10236 162928.2276 128840.2689 61321.31412 165788.3663 247051.6706 217643.6919 464026.8835 102734.7093 60465.8631 0.880415819 2.694548944 2.130793513 1.014147669 2.741850654 4.085804087 3.59944737 7.674195979 1.699053052 1 15.88383326 -6.079596854 3.420877454 4.025194135 1.783697154 0.193275435 1.746620544 0.340560884 7.653455211 0.575578901 0.593048953 8.33E-07 6.079596854 -2.241496981 RKRT(ph)PSPS(ph)YQR ddPTM_HeLa_A486_30min_R1 3 RKRTPSPSYQR 11 3 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 RKRT(0.984)PS(0.439)PS(0.573)Y(0.004)QR;RKRT(0.996)PS(0.01)PS(0.983)Y(0.011)QR;RKRT(1)PS(0.036)PS(0.905)Y(0.059)QR ;; 116.58 0.0021623 336778000 153400 103126 133237 99481 336158 134222 261542 325054 92481 186701 TRUE FALSE FALSE 142647.4522 94953.92018 184829.9346 231596.7955 293993.9291 117663.0543 196101.4253 251046.3001 100497.3275 139949.8544 1.01927546 0.678485309 1.320686866 1.654855566 2.100709075 0.840751531 1.401226362 1.793830377 0.718095263 1 17.09455046 -4.851337496 6.034967404 1.40793321 0.852706059 0.185039008 0.414079156 0.284643603 15.21988419 0.107621284 0.230863668 1.41E-05 4.851337496 -0.555227151 RKS(ph)ASDSGCDPASK ddPTM_HeLa_A486_30min_R1 2 RKSASDSGCDPASK 14 2 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 RKS(0.972)AS(0.024)DS(0.004)GCDPASK;RKS(0.804)AS(0.162)DS(0.033)GCDPASK ; 97.271 0.00063048 113977000 438500 236700 205487 204056 311830 474720 506010 439040 319390 596530 TRUE FALSE FALSE 407763.4144 217943.03 285057.0695 475052.6804 272717.3737 416153.873 379400.946 339080.1762 347074.9824 447155.0052 0.911906184 0.487399285 0.637490504 1.062389272 0.60989449 0.930670278 0.848477466 0.758305671 0.776184943 1 18.7704155 -13.99999998 0.070487354 1.719021281 0.51782551 0.147224421 0.160829919 582.9701258 2.950189474 68.96678679 8.454405842 1.00E-14 13.99999998 -1.201195771 RKS(ph)DFIPYR ddPTM_HeLa_A485_30min_R1 1 RKSDFIPYR 9 2 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 RKS(1)DFIPYR 117.2 0.0022614 0 166410 150260 132010 197760 212230 155870 193200 181150 174710 264040 TRUE FALSE FALSE 203427.3304 167831.5999 180845.9924 208563.128 191099.636 164031.1122 151921.2417 136722.6785 209772.6945 198219.6873 1.026272078 0.846694908 0.912351315 1.052181702 0.964079999 0.827521799 0.766428622 0.689753275 1.058283853 1 17.59674073 -6.259072083 24.10886446 0.842634032 0.956442668 0.121019429 0.113475161 223.1096541 2272184.1 0.03811978 0.036385666 5.51E-07 6.259072083 0.113808636 RKS(ph)ELEFETLK ddPTM_HeLa_A485_30min_R1 2 RKSELEFETLK 11 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 RKS(1)ELEFETLK;RKS(1)ELEFETLK ; 125.5 4.33E-05 810440000 604990 338200 287060 1051970 527460 383560 640620 489570 461830 1321000 TRUE FALSE FALSE 739567.9383 377749.5481 393255.4396 1109436.457 474944.2304 403642.6085 503746.3036 369502.1899 554515.0448 991699.0112 0.745758471 0.38091149 0.396547173 1.118722964 0.478919738 0.407021288 0.507962898 0.372595098 0.559156597 1 19.91954279 -10.02739342 3.818770435 1.00008767 0.54604317 0.276042682 0.217486739 80428761.29 148377790.3 91119.61798 0.057267613 9.39E-11 10.02739342 -0.4540445 RKS(ph)ELEFETLK ddPTM_HeLa_A486_30min_R1 4 RKSELEFETLK 11 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 RKS(1)ELEFETLK;RKS(1)ELEFETLK;RKS(1)ELEFETLK;RKS(1)ELEFETLK ;;; 226.65 2.87E-18 1952030000 1811120 1869450 948760 979000 1638850 2962350 2985810 2898100 1883880 3121470 TRUE FALSE FALSE 1684169.841 1721307.974 1316145.281 2279161.476 1433290.151 2596885.376 2238728.757 2238265.895 2047176.235 2339833.595 0.719781887 0.735654013 0.562495249 0.9740699 0.61256072 1.109859001 0.956789732 0.956591913 0.874923858 1 21.1579745 -6.258646424 24.99949509 0.975492198 0.726994693 0.560873949 0.114369781 195.291899 1748044.513 0.037515254 0.03591957 5.51E-07 6.258646424 -0.248497505 RKS(ph)ELPQDPHTK ddPTM_HeLa_A485_30min_R1 4 RKSELPQDPHTK 12 2 H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5 H0YJ75 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform 1 0 RKS(1)ELPQDPHTK;RKS(1)ELPQDPHTK;RKS(1)ELPQDPHTK;RKS(1)ELPQDPHTK ;;; 116.96 0.00010047 2637180000 4209800 3016500 1936450 4869530 3521610 2756100 4218020 4204350 2006170 4933650 TRUE FALSE FALSE 5146255.486 3369253.435 2652823.437 5135540.094 3170986.143 2900405.134 3316805.569 3173226.57 2408789.917 3703781.852 1.389459664 0.909679233 0.716247215 1.386566569 0.856148194 0.783092863 0.895518608 0.856753096 0.650359555 1 21.8205677 -5.963402918 24.99767062 0.830482059 1.067156338 0.272445961 0.205471333 255.6976284 174653.429 0.063306741 0.071782959 1.09E-06 5.963402918 0.236674279 RKS(ph)ELPQDPHTK ddPTM_HeLa_A486_30min_R1 4 RKSELPQDPHTK 12 2 H0YJ75;Q13362-3;Q13362;Q13362-4;Q13362-5 H0YJ75 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform 1 0 RKS(1)ELPQDPHTK;RKS(1)ELPQDPHTK;RKS(1)ELPQDPHTK;RKS(1)ELPQDPHTK ;;; 116.96 0.00010041 2505020000 4792940 3662740 1693370 1710470 3003530 4395510 4744800 4867740 2863420 4497590 TRUE FALSE FALSE 4456979.657 3372491.143 2349088.214 3982060.602 2626799.261 3853236.666 3557600.855 3759461.864 3111623.551 3371364.19 1.322010737 1.000334272 0.696776759 1.181142226 0.779150253 1.142931006 1.055240744 1.115115915 0.922956814 1 21.68490105 RKS(ph)ELPQDVYTIK ddPTM_HeLa_A485_30min_R1 4 RKSELPQDVYTIK 13 2 H0Y8C4;E9PFR3;Q14738-3;Q14738-2;Q14738 H0Y8C4 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 1 0 RKS(1)ELPQDVYTIK;RKS(1)ELPQDVYTIK;RKS(1)ELPQDVYTIK;RKS(1)ELPQDVYTIK ;;; 165.16 5.13E-12 8272300000 3752580 3297680 2415200 4568060 4120720 3897540 5459650 6158510 2928060 5299060 TRUE FALSE FALSE 4587328.475 3683314.99 3308682.985 4817601.551 3710446.648 4101609.168 4293151.176 4648125.766 3515694.784 3978101.864 1.15314505 0.925897605 0.831724048 1.211030214 0.932717858 1.031046793 1.079195889 1.168428041 0.883761881 1 21.92364879 -5.248029 24.96093096 1.047080451 0.965819805 0.074323322 0.118121881 2011.433376 3743905.904 0.031296264 0.053804614 5.65E-06 5.248029 -0.081260646 RKS(ph)ELPQDVYTIK ddPTM_HeLa_A486_30min_R1 3 RKSELPQDVYTIK 13 2 H0Y8C4;E9PFR3;Q14738-3;Q14738-2;Q14738 H0Y8C4 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 1 0 RKS(1)ELPQDVYTIK;RKS(1)ELPQDVYTIK;RKS(1)ELPQDVYTIK ;; 219.95 1.10E-27 3744610000 6605530 5582240 2887750 2793490 5160450 6432910 7701820 7430320 4657070 7847430 TRUE FALSE FALSE 6142516.458 5139882.972 4005964.137 6503385.895 4513178.242 5639282.969 5774743.174 5738598.339 5060748.577 5882382.45 1.04422256 0.873775722 0.681010487 1.105570056 0.767236452 0.958673296 0.981701415 0.975556824 0.860322942 1 22.48796916 RKS(ph)EPAVGPPR ddPTM_HeLa_A485_30min_R1 3 RKSEPAVGPPR 11 2 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RKS(1)EPAVGPPR;RKS(1)EPAVGPPR;RKS(1)EPAVGPPR ;; 146.96 3.75E-07 1392560000 357166 463406 381709 450172 517479 537050 678870 754070 474239 657800 TRUE FALSE FALSE 436616.3445 517597.3006 522919.0433 474763.7565 465956.9738 565169.1076 533823.8786 569133.1502 569414.4173 493822.5659 0.884156324 1.048144286 1.058920915 0.961405552 0.943571651 1.144478091 1.081003412 1.152505352 1.153074923 1 18.91363324 -6.264888315 24.98109467 1.114168384 0.986503718 0.498096909 0.063267954 258.3751134 1871437.43 0.021730965 0.01992571 5.43E-07 6.264888315 -0.127664666 RKS(ph)EPAVGPPR ddPTM_HeLa_A486_30min_R1 4 RKSEPAVGPPR 11 2 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RKS(1)EPAVGPPR;RKS(1)EPAVGPPR;RKS(1)EPAVGPPR;RKS(1)EPAVGPPR ;;; 137.93 6.39E-06 1700080000 1330570 1126890 769567 549819 1255110 1303300 1532470 1505070 1050270 1776670 TRUE FALSE FALSE 1237303.914 1037591.132 1067563.952 1280006.418 1097682.4 1142512.097 1149029.797 1162398.416 1141308.249 1331780.268 0.929060104 0.779100845 0.801606675 0.961124331 0.824221853 0.857883335 0.86277731 0.872815467 0.856979396 1 20.34492464 -14 0.336785226 2.495432292 0.853685171 0.395732608 0.051502626 386.8993769 3.298826517 415.2687516 0.041911948 1.00E-14 14 -1.641747121 RKS(ph)FDASDTLALPR ddPTM_HeLa_A485_30min_R1 1 RKSFDASDTLALPR 14 2 Q5JXC2 Q5JXC2 MIIP Migration and invasion-inhibitory protein 1 0 RKS(0.997)FDAS(0.002)DT(0.001)LALPR 86.367 0.0011754 107790000 64160 88399 71854 55435 98984 106190 138220 171330 71727 110080 TRUE FALSE FALSE 78432.17065 98736.49408 98435.78469 58463.27368 89128.80541 111749.9442 108688.1678 129311.0489 86121.95098 82639.08187 0.949092958 1.19479176 1.191152932 0.707453088 1.078530925 1.352265074 1.315215094 1.564768702 1.042145545 1 16.33453661 -6.166728277 5.399878966 1.293216435 1.021272604 0.246470508 0.197624127 0.293564442 13.22644476 0.065606191 0.065596002 6.81E-07 6.166728277 -0.271943831 RKS(ph)FTSLYK ddPTM_HeLa_A486_30min_R1 2 RKSFTSLYK 9 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 RKS(0.999)FT(0.001)SLYK;RKS(0.999)FT(0.001)SLYK ; 100.55 0.0013025 953710000 1478160 1327260 929670 834060 1642620 1426640 1701050 1763620 1190890 1717710 TRUE FALSE FALSE 1374548.617 1222083.084 1289663.121 1941733.831 1436587.283 1250635.662 1275429.298 1362082.226 1294117.304 1287584.236 1.067540732 0.949128647 1.001614563 1.508044117 1.115722951 0.971303956 0.99055989 1.057858731 1.005073896 1 20.29623539 -6.199631876 7.168933766 1.007810897 1.133094303 0.159516362 0.141573432 0.58218483 58.73979226 0.051125322 0.051025074 6.31E-07 6.199631876 0.125283406 RKS(ph)GGNEVSIEER ddPTM_HeLa_A485_30min_R1 1 RKSGGNEVSIEER 13 2 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 RKS(0.972)GGNEVS(0.028)IEER 84.94 0.0017755 477960000 261790 326020 287060 314290 424790 404590 478140 579100 310750 402830 TRUE FALSE FALSE 320024.2823 364145.203 393255.4396 331458.8669 382496.4161 425773.7068 375981.483 437074.817 373114.6746 302411.8945 1.058239732 1.204136509 1.300396733 1.096051025 1.264819351 1.407926456 1.243276107 1.445296382 1.233796294 1 18.20615536 -3.030223516 0.734727364 1.277645559 2.67E-09 0.147150149 0.125667029 23.97580026 2.450937718 0.046705778 38.19855249 0.000932774 3.030223516 -1.277645557 RKS(ph)GGNEVSIEER ddPTM_HeLa_A486_30min_R1 3 RKSGGNEVSIEER 13 2 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 RKS(0.997)GGNEVS(0.003)IEER;RKS(0.97)GGNEVS(0.03)IEER;RKS(0.997)GGNEVS(0.003)IEER ;; 120.9 5.68E-05 1032320000 868720 807400 600410 376204 1035320 896200 1092250 1147230 613680 1053650 TRUE FALSE FALSE 807827.2141 743418.6835 832904.8315 875821.9243 905460.5116 785635.9559 818957.4974 886030.7729 666874.2765 789809.1819 1.022813146 0.941263663 1.054564635 1.108903194 1.146429457 0.994716159 1.036905516 1.121828909 0.844348599 1 19.59114461 -9.324041681 6.982868838 1 1.035880334 0.007227983 0.085318649 0 0 0.081916654 0.019867707 4.74E-10 9.324041681 0.035880334 RKS(ph)HEAEVLK ddPTM_HeLa_A485_30min_R1 8 RKSHEAEVLK 10 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK ;;;;;;; 155.09 9.79E-07 79218100000 15306570 12993130 8381840 18879140 16878490 15990090 23309020 26286800 12569710 24523990 TRUE FALSE FALSE 18711463.69 14512563.53 11482631.41 19910459.61 15198008.27 16827306.39 18328857.46 19839921.08 15092335.5 18410610.62 1.016341287 0.788271711 0.623696392 1.081466553 0.825502672 0.91400045 0.995559454 1.077635147 0.819762897 1 24.13403414 -5.964143443 1.08180983 0.972875374 0.835099275 0.113999092 0.131825351 1.00892687 2.519258527 0.063058496 0.07645552 1.09E-06 5.964143443 -0.137776099 RKS(ph)HEAEVLK ddPTM_HeLa_A486_30min_R1 10 RKSHEAEVLK 10 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK ;;;;;;;;; 157.82 5.84E-07 1.06E+11 18907030 15922150 8266899 9477926 15584140 19240091 23964810 22120280 11994389 24728300 TRUE FALSE FALSE 17581744.83 14660420.85 11468063.69 22065090.72 13629431.84 16866444.19 17968561.06 17083975.13 13034072.3 18536172.73 0.948509981 0.790908731 0.618685629 1.190380077 0.735288349 0.909920534 0.969378163 0.921656017 0.703169553 1 24.14384006 -5.206178572 24.99995488 0.909403237 0.786522484 0.142598047 0.147709229 641.807143 290351.6639 0.038867484 0.067320411 6.22E-06 5.206178572 -0.122880752 RKS(ph)LPAR ddPTM_HeLa_A485_30min_R1 4 RKSLPAR 7 2 Q8NCE2;Q8NCE2-2;C9JSR1;Q8NCE2-3 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 0 RKS(1)LPAR;RKS(1)LPAR;RKS(1)LPAR;RKS(1)LPAR ;;; 70.552 0.014633 2963310000 2046420 3071140 1975530 1941230 2978030 3258880 4016180 5479670 2562640 2834570 TRUE FALSE FALSE 2501639.069 3430283.108 2706360.756 2047274.479 2681526.877 3429509.918 3158090.334 4135772.341 3076938.342 2127963.865 1.175602232 1.612002517 1.271807665 0.962081412 1.260137411 1.61163917 1.484090207 1.943535042 1.445954225 1 21.02104222 -6.254252784 23.23286103 1.555205074 1.260599143 0.154597053 0.264419784 330.8257393 1069494.529 0.087548106 0.085624682 5.57E-07 6.254252784 -0.294605932 RKS(ph)LPAR ddPTM_HeLa_A486_30min_R1 4 RKSLPAR 7 2 Q8NCE2;Q8NCE2-2;C9JSR1;Q8NCE2-3 Q8NCE2 MTMR14 Myotubularin-related protein 14 1 0 RKS(1)LPAR;RKS(1)LPAR;RKS(1)LPAR;RKS(1)LPAR ;;; 76.815 0.010902 1813260000 2873640 2093620 1865640 1102790 2630330 2319660 2912760 2804840 1874150 2943420 TRUE FALSE FALSE 2672212.675 1927713.926 2588065.772 2567350.852 2300409.485 2033483.934 2183956.64 2166239.161 2036602.831 2206368.474 1.211136176 0.873704438 1.172997984 1.16360929 1.042622532 0.921642943 0.989842207 0.981812053 0.923056532 1 21.07324232 -6.036897522 5.860744149 0.964996725 1.094995128 0.360744568 0.088914699 0.235857318 22.83932022 0.028834519 0.029695945 9.19E-07 6.036897522 0.129998403 RKS(ph)LS(ph)DS(ph)ESDDSK ddPTM_HeLa_A485_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 3 0 RKS(1)LS(0.956)DS(0.611)ES(0.432)DDS(0.002)K 75.334 0.00087247 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RKS(ph)LS(ph)DS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 3 0 RKS(0.89)LS(0.868)DS(0.648)ES(0.592)DDS(0.001)K 60.669 0.02973 467130000 296410 262050 104100 434900 255580 428910 603970 499220 206160 873320 TRUE FALSE FALSE 275633.1897 241284.2036 144410.3079 1012469.179 223522.7732 375995.445 452850.3179 385558.5039 224030.1148 654634.9876 0.421048668 0.368578228 0.220596685 1.546616355 0.34144642 0.574358921 0.691760029 0.588967151 0.34222142 1 19.32033119 RKS(ph)LS(ph)DSESDDSK ddPTM_HeLa_A485_30min_R1 3 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(1)LS(0.995)DS(0.005)ESDDSK;RKS(0.991)LS(0.398)DS(0.268)ES(0.182)DDS(0.16)K;RKS(0.999)LS(0.952)DS(0.041)ES(0.007)DDSK ;; 129.11 1.51E-05 3960190000 3083880 2287970 1467596 6198120 3343850 3077470 5382850 4737380 2241770 8136320 TRUE FALSE FALSE 3769878.467 2555528.189 2010520.832 6536707.601 3010924.553 3238601.571 4232760.124 3575530.127 2691672.676 6108085.162 0.617194811 0.418384505 0.329157302 1.070172964 0.492940827 0.530215523 0.692976606 0.5853766 0.440673731 1 22.54228875 -10.54064752 3.043343096 1.016860242 0.577955968 0.303320304 0.193085224 272405012.6 307553324.3 37712620.11 0.047932704 2.88E-11 10.54064752 -0.438904274 RKS(ph)LS(ph)DSESDDSKSK ddPTM_HeLa_A485_30min_R1 1 RKSLSDSESDDSKSK 15 3 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(1)LS(0.666)DS(0.323)ES(0.01)DDSKSK 78.674 0.0031112 382910000 63131 69887 30075 76154 147580 161830 386340 709670 71986 185610 TRUE FALSE FALSE 77174.27315 78059.67671 41200.99403 80314.10019 132886.417 170303.1686 303795.3029 535622.3198 86432.92991 139340.8429 0.553852493 0.560206721 0.295684978 0.576385922 0.953678866 1.222205672 2.180231557 3.843972152 0.620298601 1 17.08825867 -6.445290258 2.081412169 2.131502759 0.534066732 0.353388367 0.820773168 0.30854506 2.651193059 0.34212503 0.277450268 3.59E-07 6.445290258 -1.597436026 RKS(ph)LSDS(ph)ESDDSK ddPTM_HeLa_A485_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(0.994)LS(0.015)DS(0.97)ES(0.021)DDSK 118.96 0.00045239 613690000 1047700 718780 465240 2162300 1083300 1064300 1977200 1707000 786090 2931800 TRUE FALSE FALSE 1280757.25 802835.0684 637351.6363 2280420.974 975442.8483 1120025.102 1554755.068 1288355.574 943851.0526 2200956.216 0.581909463 0.364766488 0.289579425 1.036104652 0.443190483 0.508881137 0.706399817 0.585361746 0.428836815 1 21.06969901 -11.50693907 2.184880638 6.740142974 0.552040407 0.317280893 0.198241008 5736364.655 472940.4723 162798669 0.050573346 3.11E-12 11.50693907 -6.188102566 RKS(ph)LSDS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 2 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(0.993)LS(0.062)DS(0.755)ES(0.189)DDSK;RKS(1)LS(0.333)DS(0.555)ES(0.111)DDS(0.001)K ; 121.77 0.00022224 7996000000 11453000 9807700 3737800 10865300 8803600 14622500 21023700 17883900 7635300 26446000 TRUE FALSE FALSE 10650203.84 9030502.133 5185176.262 25294967.5 7699370.398 12818524.62 15763347.89 13812126.37 8297133.952 19823749.47 0.537244675 0.455539561 0.261563852 1.275993098 0.388391228 0.646624628 0.795174895 0.696746415 0.418545138 1 24.24072652 -14 0.123352506 2.09599157 0.458900896 0.147786776 0.270879712 313.0190039 2.47723129 88.12295031 2.413909525 1.00E-14 14 -1.637090673 RKS(ph)LSDS(ph)ESDDSKSK ddPTM_HeLa_A485_30min_R1 2 RKSLSDSESDDSKSK 15 3 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(0.975)LS(0.48)DS(0.479)ES(0.065)DDS(0.001)KSK;RKS(0.996)LS(0.043)DS(0.863)ES(0.098)DDSKSK ; 90.453 0.00069175 551980000 157928 216114 95684 204913 313140 419380 841000 1413080 144030 365050 TRUE FALSE FALSE 193058.5388 241386.6524 131081.4933 216106.8783 281962.6821 441338.0883 661313.4797 1066519.914 172935.4999 274049.7532 0.704465289 0.880813245 0.478312758 0.788568046 1.028874059 1.610430526 2.413114669 3.891701787 0.631036875 1 18.06407831 -6.351627862 2.311611269 2.208858776 0.730358014 0.309353107 0.835700137 0.317410773 3.326744769 0.325977889 0.283339673 4.45E-07 6.351627862 -1.478500762 RKS(ph)LSDSES(ph)DDSK ddPTM_HeLa_A485_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(0.999)LS(0.288)DS(0.174)ES(0.331)DDS(0.208)K 88.282 0.00646 718950000 1104700 709130 450820 2201000 1132300 1089400 2076700 1733400 789930 3079500 TRUE FALSE FALSE 1350436.704 792056.5849 617597.0782 2321235.057 1019564.236 1146439.299 1632996.08 1308280.932 948461.7053 2311837.324 0.584140021 0.342609135 0.267145561 1.004065049 0.441019022 0.495899641 0.706362884 0.565905273 0.410263168 1 21.14060845 -11.3184277 2.207119116 3.333257331 0.537506934 0.33401176 0.196845736 7199433.21 747117.134 84140489.7 0.053575343 4.80E-12 11.3184277 -2.795750397 RKS(ph)LSDSES(ph)DDSK ddPTM_HeLa_A486_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(0.992)LS(0.022)DS(0.013)ES(0.945)DDS(0.028)K 103.73 0.00185 4929500000 7225500 6010800 2575800 6349900 5232900 9044200 13076000 11313000 4836900 15786000 TRUE FALSE FALSE 6719029.763 5534482.317 3573218.742 14782888.11 4576540.887 7928418.559 9804246.496 8737276.861 5256166.386 11833082.85 0.567817351 0.467712631 0.301968539 1.249284594 0.386758121 0.670021385 0.828545411 0.738377055 0.444192477 1 23.49632265 -14 0.04949244 2.224069181 3.44E-11 0.147536141 0.259853307 1164.063658 4.253419841 196.8468757 44.59584487 1.00E-14 14 -2.224069181 RKS(ph)LSDSESDDSK ddPTM_HeLa_A485_30min_R1 6 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 RKS(0.986)LS(0.012)DS(0.003)ESDDSK;RKS(0.877)LS(0.109)DS(0.014)ESDDSK;RKS(0.999)LS(0.001)DSESDDSK;RKS(0.988)LS(0.011)DS(0.001)ESDDSK;RKS(0.999)LS(0.001)DSESDDSK;RKS(0.969)LS(0.03)DSESDDSK ;;;;; 228.46 4.33E-28 15839520000 9571360 7240760 4406530 13630310 9631060 10355790 16638510 15437020 6652030 18093900 TRUE FALSE FALSE 11700476.01 8087503.896 6036688.818 14374899.32 8672157.85 10898003.15 13083556.41 11651066.64 7987031.405 13583423.72 0.861379005 0.595395098 0.444415851 1.058267754 0.63843682 0.802301642 0.963200198 0.85774153 0.587998399 1 23.69534382 -5.25448552 24.99580983 0.832729968 0.629896517 0.24434207 0.168594628 820.1504451 2948042.47 0.045334118 0.076401326 5.57E-06 5.25448552 -0.202833451 RKS(ph)LSDSESDDSK ddPTM_HeLa_A486_30min_R1 3 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 RKS(0.974)LS(0.024)DS(0.002)ESDDSK;RKS(0.97)LS(0.03)DSESDDSK;RKS(0.958)LS(0.031)DS(0.01)ESDDSK ;; 192.72 8.32E-18 9939600000 3160940 2636940 1556950 1954620 2795470 3293540 4576850 4124320 2193520 5457270 TRUE FALSE FALSE 2939374.429 2427979.271 2159842.737 4550454.141 2444836.086 2887216.521 3431673.721 3185302.369 2383656.08 4090734.071 0.718544491 0.593531437 0.527984146 1.112380825 0.597652168 0.705794234 0.838889466 0.778662781 0.582696415 1 21.96392832 -11.56891096 2.241108328 6.251273704 0.72127362 0.217290463 0.160780508 10076145.77 865839.2913 267756786.5 0.03983232 2.70E-12 11.56891096 -5.530000084 RKS(ph)LVGTPYWMAPELISR ddPTM_HeLa_A485_30min_R1 2 RKSLVGTPYWMAPELISR 18 2 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RKS(0.993)LVGT(0.006)PY(0.001)WMAPELISR;RKS(0.948)LVGT(0.052)PYWMAPELISR ; 166.91 1.70E-12 2588000000 340438 444520 384915 351842 634170 548120 751140 968600 429120 539060 TRUE FALSE FALSE 416167.2586 496502.7472 527311.0761 371062.2375 571029.8081 576818.7156 590652.8028 731049.3313 515240.4479 404682.2627 1.02838028 1.226895253 1.303024928 0.916922415 1.411057169 1.425361991 1.45954705 1.806477325 1.273197507 1 18.62643009 -5.89375575 8.73423356 1.444168901 1.14018782 0.271559095 0.21326896 0.313558818 23.56288671 0.064141694 0.072815127 1.28E-06 5.89375575 -0.30398108 RKS(ph)LVGTPYWMAPELISR ddPTM_HeLa_A486_30min_R1 2 RKSLVGTPYWMAPELISR 18 2 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RKS(0.793)LVGT(0.203)PY(0.005)WMAPELISR;RKS(0.429)LVGT(0.309)PY(0.262)WMAPELISR ; 127.78 4.66E-06 2108390000 515610 510470 433800 281500 801180 594850 805700 785560 446150 633120 TRUE FALSE FALSE 479468.4016 470018.4981 601778.9776 655346.2262 700688.5337 521463.455 604105.3382 606705.1367 484822.6412 474582.6311 1.010294879 0.990382849 1.268017281 1.380889614 1.476431053 1.098783269 1.27291919 1.278397263 1.021576875 1 18.85629978 -9.398498165 13.18578966 1.00000899 1.210555804 0.123104226 0.157570123 0 0 0.163464661 0.039646004 3.99E-10 9.398498165 0.210546814 RKS(ph)NFSNSADDIK ddPTM_HeLa_A485_30min_R1 3 RKSNFSNSADDIK 13 2 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 RKS(0.993)NFS(0.004)NS(0.003)ADDIK;RKS(0.903)NFS(0.097)NSADDIK;RKS(0.994)NFS(0.006)NSADDIK ;; 176.85 6.10E-13 1701530000 1691730 1564640 1030195 1943310 1967580 2002640 2460960 2505260 1552690 2701460 TRUE FALSE FALSE 2068049.502 1747611.037 1411307 2049468.105 1771680.827 2107495.134 1935155.792 1890841.057 1864300.641 2028035.739 1.019730305 0.861725957 0.695898486 1.010568042 0.87359448 1.039180471 0.954202017 0.932350955 0.919264195 1 20.95165165 RKS(ph)NFSNSADDIK ddPTM_HeLa_A486_30min_R1 2 RKSNFSNSADDIK 13 2 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 RKS(0.968)NFS(0.032)NSADDIK;RKS(0.999)NFS(0.001)NSADDIK ; 102.5 0.00042794 2030310000 2235200 2170770 1384500 1016240 2389600 2431900 3103600 2796500 1738220 3049200 TRUE FALSE FALSE 2078524.023 1998750.279 1920615.478 2365858.078 2089874.086 2131876.904 2327046.453 2159797.997 1888890.309 2285660.473 0.909375669 0.874473835 0.840289055 1.035087278 0.914341439 0.932718104 1.018106793 0.94493387 0.826408966 1 21.12417968 -5.234473486 24.98988119 0.951037082 0.874688952 0.27695215 0.057964037 1030.996866 955446.0858 0.015682097 0.027154101 5.83E-06 5.234473486 -0.07634813 RKS(ph)PGGGGGGGSGNDNNQAATK ddPTM_HeLa_A485_30min_R1 2 RKSPGGGGGGGSGNDNNQAATK 22 2 Q9NS37;E9PIM0;J3KN20 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 RKS(0.886)PGGGGGGGS(0.114)GNDNNQAATK;RKS(0.902)PGGGGGGGS(0.098)GNDNNQAATK ; 114.21 4.36E-05 67121000 131258 125203 56766 146105 88574 145750 157342 214172 118168 178953 TRUE FALSE FALSE 160455.8893 139844.4017 77766.10563 154086.3462 79755.26156 153381.2446 123724.5963 161645.9812 141883.2337 134343.3105 1.194372006 1.04094801 0.578861019 1.146959574 0.593667532 1.141711069 0.920958371 1.203230593 1.056124292 1 17.03556496 RKS(ph)PGGGGGGGSGNDNNQAATK ddPTM_HeLa_A486_30min_R1 1 RKSPGGGGGGGSGNDNNQAATK 22 2 Q9NS37;E9PIM0;J3KN20 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 RKS(0.5)PGGGGGGGS(0.5)GNDNNQAATK 71.742 0.0029192 20247000 65223 19688 24990 25120 27275 71148 53531 41491 51012 72846 TRUE FALSE FALSE 60651.20451 18127.85118 34666.79726 58480.62949 23853.91517 62370.48314 40136.97761 32044.40504 55433.76123 54604.88745 1.110728496 0.331982209 0.634866197 1.070977933 0.43684579 1.142214297 0.735043683 0.586841335 1.01517948 1 15.73674247 RKS(ph)PGVAAAVAEDGGLKK ddPTM_HeLa_A485_30min_R1 2 RKSPGVAAAVAEDGGLKK 18 3 E9PLH8;E9PM78;H0YD80;E9PLS2;E9PQV9;E9PM04;Q9BTE7 E9PLH8 DCUN1D5 DCN1-like protein;DCN1-like protein 5 1 0 RKS(1)PGVAAAVAEDGGLKK;RKS(1)PGVAAAVAEDGGLKK ; 100.64 0.0018098 981520000 858520 676020 377417 1079180 858250 1058610 1482250 1708130 638220 1468910 TRUE FALSE FALSE 1049494.812 755074.6584 517039.2539 1138132.871 772799.6165 1114037.183 1165555.179 1289208.439 766304.8999 1102737.77 0.95171748 0.684727302 0.468868726 1.032097477 0.700800895 1.01024669 1.056964956 1.169097925 0.694911266 1 20.07265833 -6.269209849 24.25708036 1.001232857 0.761129397 0.263702443 0.181615272 523.7595097 1635015.016 0.063007742 0.056637961 5.38E-07 6.269209849 -0.24010346 RKS(ph)PPKEYIDEEGVR ddPTM_HeLa_A485_30min_R1 3 RKSPPKEYIDEEGVR 15 3 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 RKS(1)PPKEYIDEEGVR;RKS(1)PPKEYIDEEGVR;RKS(1)PPKEYIDEEGVR ;; 94.45 0.0054117 7407670000 2064030 1691330 1207170 3073880 2113530 2539770 3947690 4120690 1639550 4266970 TRUE FALSE FALSE 2523166.353 1889116.331 1653752.418 3241798.281 1903099.532 2672748.43 3104233.782 3110084.317 1968592.646 3203292.907 0.787678937 0.589741989 0.516266375 1.01202056 0.594107248 0.834375284 0.969075845 0.970902258 0.614552807 1 21.61112429 -5.812077315 0.907797648 0.882007077 0.648922799 0.208529712 0.165085778 0.932291473 1.668146075 0.08354925 0.12699398 1.54E-06 5.812077315 -0.233084278 RKS(ph)PPKEYIDEEGVR ddPTM_HeLa_A486_30min_R1 3 RKSPPKEYIDEEGVR 15 3 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 RKS(1)PPKEYIDEEGVR;RKS(1)PPKEYIDEEGVR;RKS(1)PPKEYIDEEGVR ;; 107.91 0.0015754 6358980000 3272130 2369560 1125260 1598720 2253790 3067240 4017570 3741670 1893230 4869300 TRUE FALSE FALSE 3042770.584 2181787.436 1560990.808 3721900.955 1971098.642 2688835.114 3012331.492 2889773.421 2057336.701 3649995.586 0.833636785 0.597750705 0.427669232 1.019700125 0.540027678 0.736668045 0.825297297 0.791719703 0.563654572 1 21.79946329 -14 0.298757879 3.408024186 0.689183041 0.21301645 0.16668095 419.2788352 3.897158875 632.4963488 0.166355907 1.00E-14 14 -2.718841145 RKS(ph)QEALHEQSSYILSSAETPARPR ddPTM_HeLa_A485_30min_R1 2 RKSQEALHEQSSYILSSAETPARPR 25 3 Q9NVE5;Q9NVE5-3 Q9NVE5 USP40 Ubiquitin carboxyl-terminal hydrolase 40 1 0 RKS(1)QEALHEQSSYILSSAETPARPR;RKS(1)QEALHEQSSYILSSAETPARPR ; 168.26 5.74E-14 1403800000 307620 279480 228078 313038 340110 295150 409940 449990 270616 475930 TRUE FALSE FALSE 376049.0077 312162.7548 312453.5433 330138.4733 306247.4542 310603.5976 322352.9701 339629.2469 324926.149 357289.4098 1.052505329 0.873697194 0.874511068 0.924008561 0.857141146 0.869333344 0.902218093 0.950571827 0.909420039 1 18.44673363 -8.473627815 0.943998882 0.999732162 0.904624008 0.183530206 0.054252915 2.668681207 3.709429918 0.052912005 0.017064017 3.36E-09 8.473627815 -0.095108155 RKS(ph)QEALHEQSSYILSSAETPARPR ddPTM_HeLa_A486_30min_R1 1 RKSQEALHEQSSYILSSAETPARPR 25 3 Q9NVE5;Q9NVE5-3 Q9NVE5 USP40 Ubiquitin carboxyl-terminal hydrolase 40 1 0 RKS(1)QEALHEQSSYILSSAETPARPR 166.97 6.47E-14 845840000 96605 76268 52443 11105 73294 75763 74898 74155 58426 66643 TRUE FALSE FALSE 89833.48837 70224.24592 72750.33407 25853.00122 64100.78308 66416.13136 56157.72821 57271.52529 63490.41272 49955.15903 1.798282502 1.405745618 1.456312731 0.51752415 1.28316643 1.329514962 1.124162735 1.146458672 1.270948065 1 15.60834606 -4.594253702 1.853179743 1.124083696 1.784564535 0.443713397 0.235627804 0.44068563 2.473375963 0.066488262 0.404371991 2.55E-05 4.594253702 0.660480839 RKS(ph)QVNGEAGSYEMTNQHVK ddPTM_HeLa_A485_30min_R1 4 RKSQVNGEAGSYEMTNQHVK 20 2 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK ;;; 280.08 6.62E-73 4923210000 2409320 2429780 1615230 2462480 2760620 3003440 4056670 5031090 2292710 3694710 TRUE FALSE FALSE 2945264.922 2713921.635 2212770.792 2596999.047 2485762.98 3160695.474 3189929.315 3797207.289 2752835.867 2773686.793 1.06185923 0.978452809 0.797772408 0.936298595 0.896194547 1.139528617 1.150068322 1.369010841 0.992482595 1 21.40337346 -6.282842214 9.080613685 1.154745719 0.929109185 0.408138695 0.116136901 0.298112163 119.3779923 0.040192163 0.036086949 5.21E-07 6.282842214 -0.225636535 RKS(ph)QVNGEAGSYEMTNQHVK ddPTM_HeLa_A486_30min_R1 4 RKSQVNGEAGSYEMTNQHVK 20 2 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK;RKS(1)QVNGEAGSYEMTNQHVK ;;; 247.13 7.12E-47 3889460000 2322160 1865750 1133010 774350 2130730 1876810 2378380 2338670 1572950 2642750 TRUE FALSE FALSE 2159388.576 1717901.175 1571741.815 1802725.933 1863473.975 1645268.264 1783284.168 1806205.894 1709294.572 1980988.199 1.090056254 0.867194048 0.793413013 0.910013464 0.940678989 0.830529059 0.900199289 0.911770143 0.862849447 1 20.91778885 -10.07521326 3.654187063 1.000042355 0.896291445 0.132599998 0.075386935 90197739.37 144401534.1 46167.76041 0.018293785 8.41E-11 10.07521326 -0.10375091 RKS(ph)YTSDLQK ddPTM_HeLa_A485_30min_R1 2 RKSYTSDLQK 10 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RKS(0.992)Y(0.005)T(0.002)SDLQK;RKS(1)YTSDLQK ; 238.13 3.56E-21 751410000 436460 401510 238560 464010 468690 448520 663830 738340 406330 715230 TRUE FALSE FALSE 533549.0212 448463.1018 326813.2713 489357.6914 422025.5779 472003.8137 521997.2975 557260.9573 487876.7039 536936.3238 0.993691426 0.835225858 0.608662996 0.911388687 0.785988132 0.879068509 0.972177285 1.037852968 0.908630469 1 19.03439148 -6.640747946 2.995569415 0.98463221 0.820265144 0.355386641 0.096763286 0.287969391 5.185661316 0.041640515 0.030684768 2.29E-07 6.640747946 -0.164367066 RKS(ph)YTSDLQK ddPTM_HeLa_A486_30min_R1 1 RKSYTSDLQK 10 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RKS(0.976)YT(0.023)S(0.001)DLQK 105.58 0.0013742 0 293230 241880 98928 102270 197720 237120 328390 350600 186190 306900 TRUE FALSE FALSE 272676.0912 222712.5479 137235.571 238089.7284 172920.1139 207866.5453 246223.3486 270776.0335 202329.0991 230050.2424 1.185289302 0.968103948 0.596546083 1.034946653 0.751662385 0.903570207 1.070302496 1.177029986 0.879499613 1 17.81158945 -6.751481318 19.33253507 1.046460418 0.894163674 0.118074069 0.163298443 24.20553447 46993.35269 0.063455605 0.048205703 1.77E-07 6.751481318 -0.152296743 RKSLS(ph)DSESDDS(ph)K ddPTM_HeLa_A485_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 RKS(0.037)LS(0.952)DS(0.055)ES(0.044)DDS(0.912)K 130.29 0.00053002 181290000 247600 167820 90357 506250 255630 237930 448630 403580 174780 659510 TRUE FALSE FALSE 302677.7658 187445.0892 123783.8144 533905.1556 230178.5796 250387.6469 352776.5355 304601.3722 209856.7428 495106.2944 0.611338957 0.37859565 0.250014625 1.07836471 0.464907399 0.505725033 0.712526864 0.615224197 0.423861997 1 18.91737877 -11.16791351 2.324340528 2.074695932 0.562559904 0.275807445 0.213828986 30293232.1 6813575.688 171405730 0.054418457 6.79E-12 11.16791351 -1.512136029 RKT(ph)EGVSPIPQEIFEYLMDR ddPTM_HeLa_A485_30min_R1 2 RKTEGVSPIPQEIFEYLMDR 20 2 A0A5F9ZH11;P55201-3;P55201;P55201-2;P55201-4;A0A5F9ZHX4;A0A5F9ZHW9 A0A5F9ZH11 BRPF1 Peregrin 1 0 RKT(0.5)EGVS(0.5)PIPQEIFEYLMDR;RKT(0.5)EGVS(0.5)PIPQEIFEYLMDR ; 128.13 5.44E-07 43402000 41023 59587 46393 35714 64261 76064 94073 128973 49114 62997 TRUE FALSE FALSE 50148.42482 66555.18131 63555.70127 37664.96539 57862.94921 80046.59342 73973.53504 97342.16953 58970.7293 47293.00727 1.060377162 1.407294337 1.343871006 0.79641722 1.223499044 1.692567211 1.564153758 2.058278277 1.246922805 1 15.52933926 -6.188821559 6.103761501 1.581127583 1.165400284 0.229890935 0.304819739 0.294532049 19.58187583 0.098875607 0.098668071 6.47E-07 6.188821559 -0.415727299 RKT(ph)GTLQPWNSDSTLNSR ddPTM_HeLa_A485_30min_R1 1 RKTGTLQPWNSDSTLNSR 18 2 Q9H0H5;F8VRD2;H0YIK5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 RKT(0.838)GT(0.162)LQPWNSDSTLNSR 218.44 2.50E-34 189260000 89160 91446 80173 89040 114580 108910 160360 190780 78100 107720 TRUE FALSE FALSE 108993.3344 102139.8142 109832.329 93904.02974 103172.0129 114612.3592 126097.776 143990.9059 93773.95362 80867.38644 1.347803351 1.263053237 1.358178294 1.161210148 1.275817328 1.417287787 1.559315585 1.780580679 1.159601636 1 16.30327037 -6.302943461 4.954143236 1.445129245 1.277467912 0.016926256 0.207536471 0.440668292 26.55318955 0.071602222 0.064188565 4.98E-07 6.302943461 -0.167661333 RKT(ph)LNASDVLSAMEEMEFQR ddPTM_HeLa_A485_30min_R1 1 RKTLNASDVLSAMEEMEFQR 20 2 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 1 0 RKT(0.418)LNAS(0.418)DVLS(0.165)AMEEMEFQR 62.203 0.014966 73350000 36222 36846 29100 37169 50229 42266 56653 70156 33255 46337 TRUE FALSE FALSE 44279.45894 41154.81918 39865.30095 39199.44835 45228.0244 44478.9824 44548.62374 52950.131 39928.97347 34786.03867 1.272908921 1.183084385 1.146014392 1.126873017 1.300177489 1.278644655 1.280646646 1.522166163 1.147844796 1 15.08622078 -5.77412467 24.88002111 1.283494851 1.179695778 0.043958506 0.12987266 446.4474102 875626.8385 0.038706862 0.044177644 1.68E-06 5.77412467 -0.103799074 RKT(ph)PEASAIGLHQDPELGDAALR ddPTM_HeLa_A485_30min_R1 1 RKTPEASAIGLHQDPELGDAALR 23 2 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 RKT(0.995)PEAS(0.005)AIGLHQDPELGDAALR 115.76 0.00011095 419840000 47448 52681 32046 43634 59894 47967 52756 61651 46058 75447 TRUE FALSE FALSE 58002.64391 58841.58469 43901.14895 46017.61493 53930.74306 50478.47795 41484.24962 46530.99558 55301.41813 56639.4514 1.024067897 1.038879848 0.775098414 0.81246576 0.952176296 0.891224698 0.732426756 0.821529772 0.976376302 1 15.78951967 -4.744259839 24.8942486 0.860489905 1.031474035 0.369154456 0.083588008 230.0587838 333364.2687 0.021374556 0.056244112 1.80E-05 4.744259839 0.170984129 RKT(ph)SDANETEDHLESLICK ddPTM_HeLa_A485_30min_R1 2 RKTSDANETEDHLESLICK 19 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RKT(0.487)S(0.487)DANET(0.026)EDHLESLICK;RKT(0.822)S(0.177)DANET(0.002)EDHLESLICK ; 147.91 1.81E-08 3243700000 2201350 2165650 1274980 2197630 2438700 2083350 3555900 3211900 1298410 2365900 TRUE FALSE FALSE 2691032.713 2418903.929 1746648.158 2317680.962 2195894.465 2192430.985 2796152.916 2424176.489 1558988.977 1776124.671 1.515114765 1.361899853 0.983404029 1.30490894 1.236340275 1.234390254 1.574299913 1.364868429 0.877747493 1 20.76030142 -7.760486308 24.99999872 0.938873619 1.314030776 0.491546819 0.155659667 21.96960277 576418.7208 0.126989895 0.041655779 1.74E-08 7.760486308 0.375157157 RKT(ph)SDANETEDHLESLICK ddPTM_HeLa_A486_30min_R1 3 RKTSDANETEDHLESLICK 19 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RKT(0.49)S(0.49)DANET(0.02)EDHLESLICK;RKT(0.498)S(0.498)DANET(0.003)EDHLESLICK;RKT(0.498)S(0.498)DANET(0.003)EDHLESLICK ;; 229.25 3.78E-35 3888700000 3556120 2744100 1328880 1050190 2889920 2715630 4198700 3975700 2039320 4267600 TRUE FALSE FALSE 3306854.352 2526647.522 1843457.925 2444895.394 2527439.286 2380603.181 3148140.851 3070519.899 2216089.9 3198965.183 1.033726272 0.789832767 0.576266955 0.764276963 0.790080273 0.744179147 0.984112258 0.959847864 0.692752116 1 21.60917386 -6.747915006 24.96737704 0.905832057 0.773433808 0.179772584 0.130930836 399.1116971 736801.5676 0.05139352 0.039582337 1.79E-07 6.747915006 -0.13239825 RKT(ph)SQSEEEEAPR ddPTM_HeLa_A485_30min_R1 2 RKTSQSEEEEAPR 13 2 Q7RTP6;J3KSK6;A0A5F9ZHV5;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 RKT(0.838)S(0.162)QSEEEEAPR;RKT(0.966)S(0.034)QSEEEEAPR ; 169.02 2.52E-11 204692000 95037 99455 71792 81584 106360 104383 129451 137859 75622 104554 TRUE FALSE FALSE 116177.6528 111085.3971 98350.84831 86040.72734 95770.42495 109848.3325 101792.7363 104048.8641 90798.64175 78490.61197 1.480147114 1.415269856 1.253026901 1.096191317 1.220151335 1.399509186 1.296877853 1.325621772 1.156808941 1 16.26023249 -14 0.123466286 0.064726924 1.424040788 0.470035037 0.104036074 163.80717 1.297169449 38.33203123 1.046697468 1.00E-14 14 1.359313864 RKT(ph)SQSEEEEAPR ddPTM_HeLa_A486_30min_R1 2 RKTSQSEEEEAPR 13 2 Q7RTP6;J3KSK6;A0A5F9ZHV5;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 RKT(0.977)S(0.023)QSEEEEAPR;RKT(0.937)S(0.062)QSEEEEAPR ; 174.78 9.76E-12 168794000 189988 172542 113553 66531 194291 162513 201014 198711 133874 232800 TRUE FALSE FALSE 176670.8223 158869.1435 157523.7627 154887.5303 169921.2111 142463.7984 150718.1711 153468.8431 145478.3061 174505.3647 1.012409117 0.910396903 0.902687221 0.887580336 0.973730586 0.816386353 0.863687895 0.879450574 0.833660938 1 17.41291186 -6.254973414 24.99729779 0.870168484 0.93117094 0.197650733 0.057239574 817.7397751 3161370.098 0.018323117 0.017918363 5.56E-07 6.254973414 0.061002456 RKTS(ph)DANETEDHLESLICK ddPTM_HeLa_A485_30min_R1 2 RKTSDANETEDHLESLICK 19 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RKT(0.315)S(0.68)DANET(0.006)EDHLESLICK;RKT(0.375)S(0.624)DANET(0.001)EDHLESLICK ; 227.51 2.36E-35 3004200000 2644400 2499800 1535270 2548800 2701500 2556600 4343000 4174300 1579420 3067200 TRUE FALSE FALSE 3232637.657 2792129.865 2103230.261 2688034.49 2432529.174 2690459.623 3415082.571 3150546.38 1896395.107 2302603.488 1.403905481 1.212596906 0.913414 1.16738922 1.056425558 1.168442434 1.483139667 1.368253977 0.823587351 1 21.13483457 -7.769645052 24.996433 0.911793585 1.210736988 0.363164694 0.16363803 244.1122105 743594.7709 0.160870845 0.0443676 1.70E-08 7.769645052 0.298943403 RKTS(ph)S(ph)DDES(ph)EEDEDDLLQR ddPTM_HeLa_A485_30min_R1 1 RKTSSDDESEEDEDDLLQR 19 2 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 3 0 RKT(0.638)S(0.681)S(0.681)DDES(1)EEDEDDLLQR 74.763 0.0043097 465710000 219310 205630 141960 429940 313030 281790 463890 487580 194240 644120 TRUE FALSE FALSE 268094.7529 229676.6398 194476.9114 453426.5335 281863.6341 296544.0887 364776.1119 368000.2405 233222.1863 483552.7382 0.554427122 0.474977436 0.402183456 0.937698203 0.582901537 0.613261109 0.754366759 0.761034343 0.482309721 1 18.88331372 -14 0.089085619 2.095112335 0.335545244 0.368012802 0.15151431 245.169077 1.517493128 52.45676089 3.767802173 1.00E-14 14 -1.75956709 RKTTAS(ph)PSVR ddPTM_HeLa_A485_30min_R1 2 RKTTASPSVR 10 2 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 RKT(0.239)T(0.239)AS(0.51)PS(0.012)VR;RKT(0.198)T(0.198)AS(0.593)PS(0.01)VR ; 43.761 0.02952 101722000 29319 66045 41723 11216.3 42923 85329 48180 124874 47815 16782 TRUE FALSE FALSE 35840.9104 73768.38823 57158.07394 11829.01807 38649.43541 89796.6945 37885.94941 94248.45571 57411.03191 12598.55625 2.84484267 5.855304907 4.536874925 0.938918542 3.067767024 7.127538483 3.007165953 7.480893353 4.556953255 1 13.62097079 RKVDEGAGDSAAVASGGAQTLALAGS(ph)PAPSGHPK ddPTM_HeLa_A485_30min_R1 2 RKVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 34 2 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 RKVDEGAGDSAAVASGGAQTLALAGS(0.911)PAPS(0.089)GHPK;RKVDEGAGDSAAVASGGAQTLALAGS(0.997)PAPS(0.003)GHPK ; 203.64 1.18E-29 1026280000 514830 574580 367690 453360 657790 627100 900940 1018530 493700 766360 TRUE FALSE FALSE 629352.1574 641772.1328 503713.8319 478125.9088 592298.118 659933.9863 708446.809 768733.9205 592781.0615 575320.5558 1.093915646 1.115503568 0.875535954 0.831060013 1.029509744 1.147071801 1.231394919 1.336183651 1.030349178 1 19.13400649 -6.228347255 3.587637718 1.177686486 0.977129353 0.295785948 0.121171674 0.274084921 7.496725916 0.044752246 0.042867073 5.91E-07 6.228347255 -0.200557132 RKVDWLTEK ddPTM_HeLa_A485_30min_R1 1 RKVDWLTEK 9 2 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KSZ0;J3KTN0;J3QL52;I3L3H2;P38919 P60842;I3L3H2 EIF4A1;EIF4A2;EIF4A3 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 0 0 135.86 0.00014942 201520000 123350 148800 112650 146510 173930 149910 202720 196070 140170 195010 FALSE FALSE TRUE 150788.7819 166200.8656 154323.9228 154513.4703 156612.9185 157759.0558 159407.2159 147983.5251 168300.8333 146397.5959 1.029994933 1.135270457 1.054142466 1.055437211 1.06977794 1.077606875 1.088864984 1.010833027 1.149614734 1 17.15953234 RKVMDS(ph)DEDDDY ddPTM_HeLa_A485_30min_R1 10 RKVMDSDEDDDY 12 2 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(0.999)DEDDDY(0.001);RKVMDS(0.998)DEDDDY(0.002);RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY ;;;;;;;;; 147.83 1.13E-07 17507770000 7164820 7895470 5725150 7066220 9406660 9470650 13504040 15870670 6779010 9325100 TRUE FALSE FALSE 8758609.491 8818776.535 7843121.228 7452229.706 8470099.902 9966518.59 10618791.54 11978363.3 8139495.126 7000524.186 1.251136238 1.259730886 1.120361993 1.064524528 1.209923668 1.423681759 1.516856632 1.711066626 1.162697951 1 22.73903152 -6.21930535 4.858023912 1.417540845 1.172974947 0.157684131 0.190790069 0.28140472 16.02713651 0.063453156 0.062071243 6.04E-07 6.21930535 -0.244565898 RKVMDS(ph)DEDDDY ddPTM_HeLa_A486_30min_R1 10 RKVMDSDEDDDY 12 2 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 RKVMDS(0.994)DEDDDY(0.006);RKVMDS(0.999)DEDDDY(0.001);RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY;RKVMDS(1)DEDDDY ;;;;;;;;; 178.85 6.38E-13 19889230000 16822920 13898690 8567729 7141950 15550650 14678030 19696650 19543630 9895850 21533960 TRUE FALSE FALSE 15643720.18 12797307.19 11885383.12 16626820.53 13600142.47 12867203.89 14768339.84 15093972.08 10753630.25 16141716.25 0.969148505 0.792809574 0.73631471 1.030052832 0.842546248 0.797139765 0.914917572 0.935090906 0.666201169 1 23.94429064 -11.6043803 2.273932729 4.411843946 0.855927518 0.147655671 0.10526516 9664568.25 645115.8647 172892336.2 0.027156016 2.49E-12 11.6043803 -3.555916428 RKVMDSDEDDDY(ph) ddPTM_HeLa_A486_30min_R1 1 RKVMDSDEDDDY 12 2 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 RKVMDS(0.019)DEDDDY(0.981) 76.465 0.0033813 413020000 386230 325890 200210 174530 345710 333560 477620 470600 228570 547140 TRUE FALSE FALSE 359157.2715 300065.2895 277736.6738 406314.6603 302347.8282 292408.7586 358114.4243 363454.6531 248382.6316 410132.5827 0.875710165 0.731629971 0.677187538 0.990691004 0.737195339 0.712961542 0.873167457 0.886188195 0.605615457 1 18.64573084 -10.05597192 4.35229126 1.000014739 0.790590031 0.247974553 0.110757871 48283165.97 0.240780644 7889.285873 0.026029067 8.79E-11 10.05597192 -0.209424708 RKVTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_A486_30min_R1 1 RKVTAEADSSSPTGILATSESK 22 2 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 RKVTAEADS(0.026)S(0.12)S(0.853)PT(0.001)GILATSESK 154.77 2.01E-15 0 134400 91116 54136 54347 98729 101390 130440 134380 69464 168210 TRUE FALSE FALSE 124979.254 83895.63632 75098.90901 126522.5625 86345.48821 88881.53266 97802.53235 103784.6075 75485.19545 126089.1211 0.991197757 0.665367762 0.595601812 1.00343758 0.684797288 0.704910399 0.77566194 0.82310517 0.59866541 1 16.94408428 -13.11548883 9.536202918 0.877964015 0.771697774 0 0.155219917 0 0 0 0.033419543 7.66E-14 13.11548883 -0.106266241 RKVTGTEGSSSTLVDYTS(ph)TSSTGGSPVR ddPTM_HeLa_A486_30min_R1 1 RKVTGTEGSSSTLVDYTSTSSTGGSPVR 28 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 RKVTGTEGS(0.001)S(0.001)S(0.001)T(0.001)LVDYT(0.028)S(0.828)T(0.124)S(0.001)S(0.002)T(0.009)GGS(0.005)PVR 181.85 2.11E-20 182130000 194090 131240 105250 49015 176930 121150 166100 157640 101210 172230 TRUE FALSE FALSE 180485.2933 120840.0644 146005.6187 114109.3971 154737.7896 106203.7448 124540.0232 121748.8133 109982.9643 129102.487 1.398000128 0.936001058 1.13092801 0.883866762 1.198565521 0.822631285 0.96466014 0.943040031 0.851904304 1 16.97815727 -2.063796436 1.377081853 0.964805059 199.9999998 0.548751789 0.114150704 518.3652998 2.742075019 0.030952643 324114.7513 0.008633831 2.063796436 199.0351947 RKVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 RKVTGTEGSSSTLVDYTSTSSTGGSPVR 28 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 RKVTGTEGSSSTLVDYTSTSST(0.001)GGS(0.999)PVR;RKVTGTEGSSSTLVDYTSTSSTGGS(1)PVR ; 196.77 1.49E-22 1938640000 750500 1181490 898310 568690 1124510 1178710 1375870 1941410 909740 795010 TRUE FALSE FALSE 917446.1358 1319654.978 1230632.251 599756.0947 1012549.836 1240425.433 1081904.135 1465276.153 1092316.473 596828.6381 1.537201932 2.211112024 2.061952414 1.00490502 1.696550352 2.078361114 1.812755062 2.455103626 1.830201173 1 19.18695724 -6.23182913 22.68892726 1.924820129 1.711840718 0.001747551 0.456499692 836.9408697 641305.8231 0.150748195 0.150709787 5.86E-07 6.23182913 -0.212979411 RKVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 RKVTGTEGSSSTLVDYTSTSSTGGSPVR 28 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 RKVTGTEGSSSTLVDYTSTS(0.001)S(0.001)T(0.007)GGS(0.991)PVR;RKVTGTEGSSSTLVDYTSTSSTGGS(1)PVR ; 180.77 1.42E-20 1791050000 788060 554290 446520 242740 684670 502570 699210 649350 430540 794730 TRUE FALSE FALSE 732821.0635 510366.0417 619424.5022 565110.9874 598792.3043 440568.0232 524260.2625 501507.1802 467859.5539 595724.4352 1.230134304 0.85671497 1.039783607 0.948611395 1.005149812 0.739550029 0.880038205 0.841844233 0.785362369 1 19.18428561 -6.23446217 23.39937999 0.841391695 1.004794073 0.368897142 0.108281068 359.4363359 311765.949 0.033412277 0.033399734 5.83E-07 6.23446217 0.163402378 RKVTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK ddPTM_HeLa_A485_30min_R1 1 RKVTGTEGSSSTLVDYTSTSSTGGSPVRK 29 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 RKVTGTEGSSSTLVDYT(0.013)S(0.008)T(0.008)S(0.002)S(0.006)T(0.143)GGS(0.82)PVRK 131.76 1.94E-05 1026100000 204640 255910 172570 136740 235110 304340 337660 479270 208010 249880 TRUE FALSE FALSE 250161.462 285836.4484 236410.8242 144209.76 211701.6229 320274.7718 265516.1826 361728.281 249755.699 187589.5147 1.333557808 1.52373361 1.260256068 0.768751709 1.128536545 1.707317023 1.415410573 1.928296907 1.331394771 1 17.51721967 -6.249873737 24.76757329 1.530685334 1.199847134 0.169983202 0.290049028 1024.546712 2194045.844 0.097686689 0.096865136 5.63E-07 6.249873737 -0.330838201 RKYQEDS(ph)DPERSDY(ph)EEQQLQK ddPTM_HeLa_A485_30min_R1 1 RKYQEDSDPERSDYEEQQLQK 21 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 RKYQEDS(1)DPERS(0.411)DY(0.589)EEQQLQK 181.37 3.43E-19 469840000 173750 195900 110950 146560 158660 232140 286640 331570 154240 203510 TRUE FALSE FALSE 212400.0881 218808.8009 151995.022 154566.2017 142863.2533 244294.4914 225397.0224 250251.9376 185194.5532 152778.7023 1.390246709 1.432194393 0.994870487 1.011699925 0.935099272 1.599008813 1.475317037 1.63800277 1.212175195 1 17.22108392 -6.267497746 24.96450455 1.430426946 1.151727621 0.189051163 0.230893192 722.6357102 2977732.146 0.082560438 0.074691954 5.40E-07 6.267497746 -0.278699325 RKYQEDS(ph)DPERSDY(ph)EEQQLQK ddPTM_HeLa_A486_30min_R1 1 RKYQEDSDPERSDYEEQQLQK 21 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 RKYQEDS(0.827)DPERS(0.419)DY(0.753)EEQQLQK 71.052 0.0046497 614050000 157110 115450 62721 74799 93208 142720 175980 153440 99727 236130 TRUE FALSE FALSE 146097.4003 106301.3215 87008.25093 174135.8521 81516.98351 125112.6575 131947.9427 118505.0616 108371.4167 177001.5111 0.825401995 0.600567311 0.491567843 0.983809975 0.460543998 0.706845138 0.745462239 0.669514406 0.612262664 1 17.43340215 -10.4103005 5.857847973 1.000114198 0.674889342 0.305285126 0.145983964 0.000206115 2.07E-05 0.133811559 0.032442752 3.89E-11 10.4103005 -0.325224856 RKYQEDS(ph)DPERSDYEEQQLQK ddPTM_HeLa_A486_30min_R1 1 RKYQEDSDPERSDYEEQQLQK 21 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 RKYQEDS(1)DPERSDYEEQQLQK 158.67 9.97E-10 130980000 366880 271730 105390 126070 219220 282840 363350 339850 187730 486210 TRUE FALSE FALSE 341163.6066 250197.1252 146199.8304 293497.3312 191723.3835 247946.0765 272435.9869 262473.5739 204002.5876 364459.8513 0.936080079 0.686487481 0.401141113 0.805293999 0.526048021 0.680311084 0.747506168 0.720171434 0.559739535 1 18.47540037 -10.82680794 3.018735388 1.099230063 0.669273413 0.320119612 0.142556178 80794826.81 94360549.67 59396307.91 0.034414294 1.49E-11 10.82680794 -0.42995665 RLAAAEETAVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 RLAAAEETAVSPR 13 1 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR;RLAAAEET(0.001)AVS(0.999)PR;RLAAAEET(0.02)AVS(0.98)PR ;;; 175.19 1.04E-12 7477340000 1940330 3219200 3128050 1815460 3099370 2907530 3211850 3533250 2542250 2429560 TRUE FALSE FALSE 2371949.714 3595657.437 4285245.864 1914633.983 2790785.84 3059763.775 2525612.009 2666714.898 3052456.256 1823915.405 1.300471342 1.971394851 2.349476216 1.049738369 1.530107061 1.677579874 1.384719929 1.462082556 1.673573373 1 20.79860739 -11.60579208 0.136562555 3.20E-14 1.895050705 0.224028088 0.340910543 97.39717579 1.577051061 32.83027065 2.729016141 2.48E-12 11.60579208 1.895050705 RLAAAEETAVS(ph)PR ddPTM_HeLa_A486_30min_R1 5 RLAAAEETAVSPR 13 1 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 RLAAAEET(0.008)AVS(0.992)PR;RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR;RLAAAEET(0.001)AVS(0.999)PR ;;;; 154.39 2.05E-08 8238690000 1907990 2072610 2115370 623303 2625170 1781970 1933360 2139590 1622280 1953490 TRUE FALSE FALSE 1774249.754 1908368.835 2934497.916 1451080.884 2295896.7 1562128.659 1449612.879 1652452.064 1762900.537 1464323.389 1.211651584 1.303242747 2.003995796 0.990956571 1.567889113 1.066792125 0.989954057 1.128474814 1.203901099 1 20.48180277 -6.277097922 23.63267414 1.080362137 1.418411246 0.309371113 0.252265005 511.7980885 772428.4976 0.087520806 0.077496468 5.28E-07 6.277097922 0.338049109 RLAAQESS(ph)ETEDMSVPR ddPTM_HeLa_A485_30min_R1 1 RLAAQESSETEDMSVPR 17 1 Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 RLAAQES(0.029)S(0.971)ETEDMSVPR 121.21 3.47E-06 0 57012 68378 74608 71609 118280 83382 102140 140890 76502 73914 TRUE FALSE FALSE 69694.12271 76374.21229 102208.6039 75520.81835 106503.6279 87747.75259 80316.95459 106336.5066 91855.24968 55488.60009 1.256007948 1.37639465 1.841974815 1.361015023 1.919378534 1.581365406 1.447449647 1.916366721 1.655389567 1 15.75990379 -4.575004586 8.185291172 1.621076104 1.285439585 0.143228452 0.266863448 0.340026389 47.36764969 0.062883634 0.168379987 2.66E-05 4.575004586 -0.335636519 RLAAQLGAPTS(ph)PIPDSAIVNTR ddPTM_HeLa_A486_30min_R1 1 RLAAQLGAPTSPIPDSAIVNTR 22 1 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 RLAAQLGAPT(0.233)S(0.767)PIPDSAIVNTR 62.605 0.0014856 0 45983 41203 38216 22782 54498 35474 47431 50389 32760 54862 TRUE FALSE FALSE 42759.82916 37937.92422 53014.25866 53037.64734 47662.35267 31097.57855 35563.26213 38916.52468 35599.66318 41124.19811 1.039772959 0.922520705 1.289125651 1.289694384 1.158985582 0.756186868 0.864777035 0.946316925 0.865662185 1 15.32769993 -6.24535673 24.4068382 0.88187019 1.144535503 0.539432652 0.117009061 505.4672471 767091.1775 0.042196598 0.042060922 5.68E-07 6.24535673 0.262665314 RLAEDDWT(ph)GMESEEENKKDDEEMDIDTVK ddPTM_HeLa_A485_30min_R1 1 RLAEDDWTGMESEEENKKDDEEMDIDTVK 29 3 O95149;H3BTA6;H3BSK1;H3BUB4;H3BRI5 O95149 SNUPN Snurportin-1 1 0 RLAEDDWT(0.5)GMES(0.5)EEENKKDDEEMDIDTVK 46.32 0.018915 177010000 9635.2 8150.5 4696.2 20560 9826.9 13927 16775 17546 7490.4 36302 TRUE FALSE FALSE 11778.517 9103.630075 6433.519805 21683.14074 8848.499332 14656.19618 13190.88421 13242.81599 8993.654574 27252.57949 0.432198244 0.334046547 0.236070123 0.795636272 0.324684837 0.537791154 0.484023328 0.485928901 0.330011131 1 14.73410517 -11.19493556 2.2950142 2.559086131 0.443510371 0.563552195 0.147805786 16759283.32 3286626.986 135780440.8 0.038171685 6.38E-12 11.19493556 -2.11557576 RLAEDDWTGMES(ph)EEENKKDDEEMDIDTVK ddPTM_HeLa_A486_30min_R1 1 RLAEDDWTGMESEEENKKDDEEMDIDTVK 29 3 O95149;H3BTA6;H3BSK1;H3BUB4;H3BRI5 O95149 SNUPN Snurportin-1 1 0 RLAEDDWT(0.003)GMES(0.997)EEENKKDDEEMDIDTVK 208.49 6.79E-29 219060000 72137 59684 13394 100840 40403 94464 179590 130770 49604 259120 TRUE FALSE FALSE 67080.56882 54954.42247 18580.5155 234760.6162 35335.279 82809.99212 134654.6825 100996.5257 53903.71466 194234.6654 0.345358377 0.282927985 0.095660141 1.208644274 0.181920559 0.426339922 0.693257726 0.519971682 0.277518509 1 17.56744118 -14 0.231532038 3.866186402 0.398367443 0.225556425 0.302355765 257.9642507 2.582056671 348.0776542 0.517904588 1.00E-14 14 -3.46781896 RLAS(ph)TSDIEEK ddPTM_HeLa_A486_30min_R1 1 RLASTSDIEEK 11 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RLAS(0.963)T(0.036)S(0.001)DIEEK 138.81 6.46E-06 711310000 1192600 1108200 841890 410510 1129100 989670 1195400 1029000 804820 1428700 TRUE FALSE FALSE 1109004.899 1020382.196 1167892.355 955688.026 987477.7496 867574.5776 896298.2763 794719.1629 874582.4456 1070944.221 1.035539365 0.952787434 1.090525848 0.8923789 0.922062728 0.810102488 0.836923398 0.742073348 0.816646123 1 20.03045191 -5.710531428 1.501011271 0.826163432 1.018149504 0.498521121 0.074598469 0.292481716 1.368356409 0.026119638 0.03753886 1.95E-06 5.710531428 0.191986072 RLAS(ph)TSDIEEKENR ddPTM_HeLa_A485_30min_R1 1 RLASTSDIEEKENR 14 2 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RLAS(0.971)T(0.028)S(0.001)DIEEKENR 144.17 4.16E-08 387180000 192790 251510 181830 196530 347990 366050 438750 514950 187540 239290 TRUE FALSE FALSE 235675.4704 280921.9067 249096.4836 207265.9363 313342.8937 385215.812 345007.4782 388657.7051 225177.5578 179639.4068 1.311936365 1.563810033 1.386647217 1.153788804 1.744288179 2.144383679 1.920555653 2.16354369 1.253497558 1 17.45474434 -5.867242106 7.219586428 1.79989718 1.372750142 0.156951032 0.359581379 0.321996392 19.6672244 0.108026004 0.122883618 1.36E-06 5.867242106 -0.427147038 RLAVPTEVSTEVPEMDT(ph)ST ddPTM_HeLa_A485_30min_R1 1 RLAVPTEVSTEVPEMDTST 19 1 O00488 O00488 ZNF593 Zinc finger protein 593 1 0 RLAVPTEVSTEVPEMDT(0.333)S(0.333)T(0.333) 188.44 3.36E-18 181070000 117130 169140 178610 109830 198870 156820 202410 236140 140070 150010 TRUE FALSE FALSE 143185.1644 188919.4517 244685.2716 115829.7348 179069.8045 165030.8527 159163.45 178226.2947 168180.7642 112615.2677 1.271454282 1.677565178 2.172753984 1.028543795 1.590102374 1.465439421 1.413338113 1.582612183 1.493409975 1 16.78104291 -11.9317364 0.265837808 7.00E-10 1.58166324 0.239612958 0.278908861 87.20585257 2.288304961 49.64927803 0.37137712 1.17E-12 11.9317364 1.58166324 RLAVPTEVSTEVPEMDT(ph)ST ddPTM_HeLa_A486_30min_R1 2 RLAVPTEVSTEVPEMDTST 19 1 O00488 O00488 ZNF593 Zinc finger protein 593 1 0 RLAVPTEVSTEVPEMDT(0.333)S(0.333)T(0.333);RLAVPTEVSTEVPEMDT(0.333)S(0.333)T(0.333) ; 168.05 2.09E-12 261980000 383060 409350 337810 154728 486510 369150 467890 476980 288575 451910 TRUE FALSE FALSE 356209.4721 376911.6152 468619.0789 360214.6035 425487.3793 323608.0262 350818.9732 368382.0664 313588.9133 338748.7946 1.051544619 1.112658174 1.383382277 1.063367927 1.256055774 0.955303846 1.03563165 1.087478605 0.925727024 1 18.36985629 -6.26717057 24.9911859 1.008470849 1.175579706 0.429894625 0.099155729 488.8903555 2131828.343 0.034213181 0.030982477 5.41E-07 6.26717057 0.167108857 RLAVPTEVSTEVPEMDTS(ph)T ddPTM_HeLa_A485_30min_R1 1 RLAVPTEVSTEVPEMDTST 19 1 O00488 O00488 ZNF593 Zinc finger protein 593 1 0 RLAVPTEVSTEVPEMDT(0.097)S(0.806)T(0.097) 119.4 5.37E-05 67018000 157160 219440 214830 184960 296950 217580 258910 305860 212820 236540 TRUE FALSE FALSE 192119.6998 245101.5991 294304.5568 195063.8965 267384.6153 228972.1524 203591.7634 230847.3554 255531.0219 177574.9312 1.081907781 1.380271401 1.657354193 1.098487805 1.505756548 1.289439623 1.146511853 1.29999969 1.439003919 1 17.4380684 -6.516930698 24.26269329 1.242321245 1.355132139 0.079506307 0.191072141 550.9487789 2247400.192 0.070112136 0.056216716 3.04E-07 6.516930698 0.112810894 RLDNMLLAEGVAGPEK ddPTM_HeLa_A486_30min_R1 1 RLDNMLLAEGVAGPEK 16 1 H0YLM3;H0YLD4;H0YLT4;H0YLB0 H0YLM3 PBX1 0 0 73.887 0.0080715 43147000 66505 103810 50160 80681 117110 168880 202740 202590 87882 196980 FALSE FALSE TRUE 61843.34293 95583.71753 69583.29533 187829.4454 102420.9718 148045.3026 152012.3076 156464.6795 95499.68252 147654.9259 0.418836978 0.647345268 0.471256173 1.272083842 0.693650897 1.002643845 1.029510575 1.059664475 0.646776137 1 17.17186996 -5.23652806 24.99282311 0.954102477 0.525965977 0.569794158 0.177169978 556.0309279 557849.4185 0.045606411 0.07895023 5.80E-06 5.23652806 -0.428136501 RLDQEQGPEES(ph)QPETDTSDMDPLVGFTIEDVK ddPTM_HeLa_A485_30min_R1 1 RLDQEQGPEESQPETDTSDMDPLVGFTIEDVK 32 1 Q8IVU9 Q8IVU9 C10orf107 Uncharacterized protein C10orf107 1 0 RLDQEQGPEES(0.2)QPET(0.2)DT(0.2)S(0.2)DMDPLVGFT(0.2)IEDVK 43.066 0.024893 77457000 7083.3 16830 17008 4635.2 15272 12323 10905 15678 12060 5999.5 TRUE FALSE FALSE 8658.955648 18798.1221 23299.96696 4888.409239 13751.46606 12968.21323 8575.057664 11832.94592 14480.33138 4503.935063 1.922531193 4.17371073 5.173246647 1.085364059 3.05321144 2.879307327 1.903903486 2.62724612 3.215039999 1 12.13697031 -5.263759204 24.9994838 2.364828608 3.798217591 0.301524883 1.038865822 263.9873502 2844857.295 0.285190643 0.446972369 5.45E-06 5.263759204 1.433388982 RLDQEQGPEES(ph)QPETDTSDMDPLVGFTIEDVK ddPTM_HeLa_A486_30min_R1 1 RLDQEQGPEESQPETDTSDMDPLVGFTIEDVK 32 1 Q8IVU9 Q8IVU9 C10orf107 Uncharacterized protein C10orf107 1 0 RLDQEQGPEES(0.2)QPET(0.2)DT(0.2)S(0.2)DMDPLVGFT(0.2)IEDVK 43.066 0.024893 2888400000 478500 359370 515570 30804 505830 122890 136670 216910 303200 37139 TRUE FALSE FALSE 444959.621 330892.2124 715212.5114 71713.26875 442384.0847 107729.0813 102473.7205 167524.3281 329481.6201 27839.15267 15.98323147 11.88585789 25.6908865 2.575986044 15.89071658 3.869696846 3.680920956 6.017579993 11.83518852 1 14.76482768 -5.276285945 24.99127726 6.794549189 17.25657928 0.493589867 5.291296517 681.4765654 1147130.388 1.453872015 2.166456875 5.29E-06 5.276285945 10.46203009 RLDS(ph)SACLHAVGDK ddPTM_HeLa_A485_30min_R1 1 RLDSSACLHAVGDK 14 1 E5RJP4;O94808 E5RJP4 GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 1 0 RLDS(0.5)S(0.5)ACLHAVGDK 130.02 4.67E-05 0 489790 443280 419370 409350 596460 340090 630310 534120 404280 541560 TRUE FALSE FALSE 598742.0957 495117.74 574512.4144 431711.754 537074.3481 357896.5865 495639.1193 403126.2325 485415.2877 406559.0587 1.472706321 1.217824888 1.413109368 1.061867261 1.321024182 0.880306511 1.219107307 0.99155639 1.193960084 1 18.63310541 -1.000000282 0.286268525 1.032848344 4.34631761 0.456648064 0.134847553 45.30692617 0.641701734 0.134560306 75.66601014 0.099999935 1.000000282 3.313469265 RLDS(ph)SACLHAVGDK ddPTM_HeLa_A486_30min_R1 2 RLDSSACLHAVGDK 14 1 E5RJP4;O94808 E5RJP4 GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 1 0 RLDS(0.5)S(0.5)ACLHAVGDK;RLDS(0.957)S(0.043)ACLHAVGDK ; 150.13 6.11E-07 722620000 400150 477670 334740 130120 489220 496890 615340 652590 351350 443800 TRUE FALSE FALSE 372101.5514 439817.6896 464360.2926 302925.9359 427857.4658 435588.7638 461375.4236 504009.5029 381805.3009 332669.5913 1.118531904 1.32208564 1.395860351 0.910591 1.28613338 1.30937355 1.386887878 1.515045306 1.147701235 1 18.34373047 -5.97693414 24.99966537 1.309692618 1.197242374 0.033570885 0.17710984 636.2753901 689616.415 0.05449253 0.06178578 1.05E-06 5.97693414 -0.112450244 RLDS(ph)SGER ddPTM_HeLa_A485_30min_R1 3 RLDSSGER 8 1 A0A087X2H1;Q9ULT8;A0A087WVU6;G3V4V5 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 RLDS(0.882)S(0.118)GER;RLDS(0.985)S(0.015)GER;RLDS(0.882)S(0.118)GER ;; 101.45 0.0011684 3767370000 1048166 1260663 1063554 1021534 1154901 1077508 1176636 1703434 1127525 1193884 TRUE FALSE FALSE 1281326.911 1408086.572 1457006.883 1077337.816 1039915.001 1133924.653 925238.1064 1285664.141 1353808.925 896270.6906 1.429620453 1.571050561 1.625632633 1.202022812 1.160268892 1.26515869 1.032319941 1.434459649 1.510491127 1 19.77357499 -5.266559986 24.96427882 1.23776543 1.544996155 0.460342161 0.155027241 385.2406911 1878149.29 0.04461325 0.068517863 5.41E-06 5.266559986 0.307230725 RLDS(ph)SGER ddPTM_HeLa_A486_30min_R1 1 RLDSSGER 8 1 A0A087X2H1;Q9ULT8;A0A087WVU6;G3V4V5 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 RLDS(0.734)S(0.266)GER 99.5 0.0013648 1075800000 315200 255960 365900 131860 286880 385440 318620 284830 340620 345650 TRUE FALSE FALSE 293106.1077 235676.7974 507586.2791 306976.7438 250896.8354 337888.3317 238897.906 219980.4268 370145.2159 259096.9902 1.13126018 0.909608395 1.959058956 1.184794712 0.968351022 1.304099794 0.922040452 0.849027334 1.428597127 1 17.98313273 -5.517130001 24.88551002 1.07475726 1.337770352 0.128521648 0.296809139 494.9121223 2142410.457 0.087344938 0.116564528 3.04E-06 5.517130001 0.263013092 RLDSDAVNTIESQSVS(ph)PDHNKEPK ddPTM_HeLa_A485_30min_R1 1 RLDSDAVNTIESQSVSPDHNKEPK 24 2 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 RLDSDAVNTIES(0.001)QS(0.002)VS(0.997)PDHNKEPK 227.04 1.12E-38 348930000 151980 123820 82521 240890 158580 177530 279450 278470 134460 351260 TRUE FALSE FALSE 185787.4267 138299.6719 113048.9519 254049.2107 142791.2184 186825.1963 219743.2246 210174.7959 161444.8887 263697.3465 0.704547957 0.524463647 0.428707203 0.963412086 0.541496607 0.708483414 0.833316025 0.797030379 0.612235545 1 18.00852353 -13.99999997 0.076337093 2.060650289 0.33855048 0.324619461 0.147609746 316.6707734 1.719130974 57.49573378 5.951817149 1.00E-14 13.99999997 -1.72209981 RLDSDAVNTIESQSVS(ph)PDHNKEPK ddPTM_HeLa_A486_30min_R1 2 RLDSDAVNTIESQSVSPDHNKEPK 24 2 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 RLDSDAVNTIESQS(0.002)VS(0.998)PDHNKEPK;RLDSDAVNTIESQS(0.219)VS(0.78)PDHNKEPK ; 257.08 1.37E-61 1156720000 594180 518420 209335 317280 442680 638580 928310 807690 421740 962320 TRUE FALSE FALSE 552531.0503 477338.5111 290395.1182 738643.8744 387154.9466 559798.4922 696037.0193 623796.6187 458296.7628 721348.8083 0.765969312 0.661730505 0.402572396 1.02397601 0.536709761 0.776044108 0.964910472 0.864764191 0.635333084 1 19.46033752 -6.519705813 24.90833295 0.857195878 0.678695331 0.204688072 0.174586055 215.1794174 1689242.24 0.064220408 0.050765924 3.02E-07 6.519705813 -0.178500546 RLDSS(ph)ACLHAVGDK ddPTM_HeLa_A485_30min_R1 1 RLDSSACLHAVGDK 14 1 E5RJP4;O94808 E5RJP4 GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 1 0 RLDS(0.156)S(0.844)ACLHAVGDK 165.3 5.16E-09 0 535460 452140 434860 447860 629330 391280 658560 580150 409930 568090 TRUE FALSE FALSE 654571.2297 505013.8399 595732.81 472325.4578 566671.6955 411766.8158 517853.2761 437867.3029 492199.1909 426475.6179 1.534838575 1.184156418 1.396874253 1.107508701 1.328731753 0.965510802 1.214262327 1.026711222 1.154108629 1 18.70210374 -1 0.268389315 1.038192129 4.04572337 0.548682506 0.116904186 37.88691259 0.528186551 0.12593143 52.6848197 0.1 1 3.007531241 RLEDQAATPTGLGSLTPSAAGS(ph)TASLVGVGLPPPTPR ddPTM_HeLa_A485_30min_R1 1 RLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPTPR 37 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 RLEDQAATPT(0.001)GLGS(0.007)LT(0.145)PS(0.145)AAGS(0.339)T(0.339)AS(0.023)LVGVGLPPPT(0.001)PR 119.46 9.36E-06 335210000 30619 33547 43784 31616 41593 40408 51152 55369 38700 44651 TRUE FALSE FALSE 37430.09092 37470.02983 59981.5236 33343.10202 37451.85488 42523.7004 40222.95733 41789.66593 46466.73502 33520.32744 1.116638582 1.117830066 1.789407449 0.994712897 1.117287859 1.268594421 1.199957172 1.246696233 1.38622557 1 15.03274862 RLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPT(ph)PR ddPTM_HeLa_A485_30min_R1 1 RLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPTPR 37 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 RLEDQAATPTGLGSLT(0.004)PS(0.001)AAGS(0.023)T(0.091)AS(0.091)LVGVGLPPPT(0.789)PR 182.68 4.10E-21 264850000 65949 87962 68789 76684 98201 93561 113280 104570 78119 93860 TRUE FALSE FALSE 80619.12753 98248.39073 94236.91365 80873.05275 88423.76364 98459.70929 89076.80259 78924.04354 93796.76675 70462.42937 1.144143457 1.394337261 1.337406537 1.147747154 1.254906543 1.397336285 1.264174446 1.120086892 1.33115999 1 16.1045666 -12.24499866 0.3244042 0.288915371 1.280892966 0.398408666 0.09713891 96.59023896 2.454315591 46.55003913 0.086851057 5.69E-13 12.24499866 0.991977595 RLELLPSAES(ph)PVCWLEQPESHQR ddPTM_HeLa_A485_30min_R1 4 RLELLPSAESPVCWLEQPESHQR 23 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 RLELLPS(0.21)AES(0.79)PVCWLEQPESHQR;RLELLPS(0.034)AES(0.966)PVCWLEQPESHQR;RLELLPS(0.006)AES(0.994)PVCWLEQPESHQR;RLELLPS(0.084)AES(0.916)PVCWLEQPESHQR ;;; 172.83 9.01E-15 277008000 66720.8 97286.9 97989.4 61243.9 114153 87745.4 100762.5 111212.5 89442.4 95164 TRUE FALSE FALSE 81562.61178 108663.7567 134239.7567 64589.49918 102787.5265 92339.61346 79233.76872 83937.46 107392.6693 71441.36616 1.141672061 1.521020139 1.879020012 0.904091042 1.43876765 1.292523064 1.109074098 1.174913982 1.503228102 1 16.12447205 -5.267203663 24.97454896 1.220128041 1.514615673 0.261141137 0.238290073 659.4557478 2857183.365 0.065926178 0.100843271 5.41E-06 5.267203663 0.294487632 RLELLPSAES(ph)PVCWLEQPESHQR ddPTM_HeLa_A486_30min_R1 3 RLELLPSAESPVCWLEQPESHQR 23 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 RLELLPS(0.103)AES(0.897)PVCWLEQPESHQR;RLELLPS(0.03)AES(0.97)PVCWLEQPESHQR;RLELLPS(0.032)AES(0.968)PVCWLEQPESHQR ;; 172.18 1.01E-14 216431000 91454 108319 110970 41208.4 154218 93951 112715 119102 89455 105429 TRUE FALSE FALSE 85043.54687 99735.40795 153940.5559 95935.23776 134874.5404 82360.28084 84512.51482 91985.07458 97209.03143 79028.89217 1.076107035 1.262011971 1.947902237 1.213926137 1.706648502 1.04215406 1.069387568 1.163942351 1.230044212 1 16.27009256 -6.284221858 24.7182246 1.109369628 1.446868246 0.332450169 0.240839658 864.0559853 937468.4579 0.085143543 0.075144083 5.20E-07 6.284221858 0.337498618 RLELYFRPK ddPTM_HeLa_A485_30min_R1 2 RLELYFRPK 9 2 Q5T7U4;Q5T7U1;Q9Y5Q8;Q9Y5Q8-3 Q5T7U4 GTF3C5 General transcription factor 3C polypeptide 5 0 0 ; ; 136.63 0.00032959 16646500 21942.4 28019 27777 24215 28503 26033 31875 30962 21509 29763 FALSE FALSE TRUE 26823.41118 31295.57832 38052.8682 25537.80413 25665.14124 27396.04763 25064.64586 23368.52095 25825.65901 22343.63185 1.200494681 1.400648674 1.703074436 1.142956718 1.148655752 1.2261233 1.121780292 1.045869405 1.155839802 1 14.44757609 -5.408615588 10.87407153 1.126374736 1.431192511 0.562077885 0.127227108 0.364296214 32.64496201 0.03626257 0.053792318 3.90E-06 5.408615588 0.304817775 RLELYFRPK ddPTM_HeLa_A486_30min_R1 1 RLELYFRPK 9 2 Q5T7U4;Q5T7U1;Q9Y5Q8;Q9Y5Q8-3 Q5T7U4 GTF3C5 General transcription factor 3C polypeptide 5 0 0 123.63 0.0011692 8643300 16220 12409 9774.5 5126.4 12864 13395 15104 13722 9972 16245 FALSE FALSE TRUE 15083.06176 11425.66565 13559.44817 11934.51827 11250.47717 11742.46109 11324.81945 10597.80015 10836.38099 12177.14626 1.238636823 0.938287625 1.11351608 0.980075136 0.923900964 0.964303199 0.930006029 0.870302444 0.889894952 1 13.57188845 -1 0.49151996 0.91984034 9.13601969 0.616842826 0.065702809 68.89658879 0.750937055 0.036028524 581.8124854 0.1 1 8.216179349 RLEQTSVRDPS(ph)PEADAPVLGSPEK ddPTM_HeLa_A485_30min_R1 3 RLEQTSVRDPSPEADAPVLGSPEK 24 2 O15234 O15234 CASC3 Protein CASC3 1 0 RLEQT(0.005)S(0.012)VRDPS(0.983)PEADAPVLGSPEK;RLEQTS(0.001)VRDPS(0.998)PEADAPVLGSPEK;RLEQT(0.001)S(0.009)VRDPS(0.989)PEADAPVLGSPEK ;; 201.32 7.21E-29 1313130000 690794 899080 574655 681406 581014 866880 957840 960760 574865 837780 TRUE FALSE FALSE 844458.7421 1004219.585 787243.7979 718629.4844 523166.2061 912268.4963 753189.6592 725132.1036 690235.1325 628936.8642 1.342676491 1.596693789 1.251705605 1.142609895 0.83182627 1.450492964 1.197560045 1.15294896 1.09746331 1 19.26255567 -4.950794353 4.811085021 1.138921498 1.467618772 0.426398806 0.15783604 0.186117802 9.415379246 0.042097766 0.090031101 1.12E-05 4.950794353 0.328697274 RLEQTSVRDPS(ph)PEADAPVLGSPEK ddPTM_HeLa_A486_30min_R1 3 RLEQTSVRDPSPEADAPVLGSPEK 24 2 O15234 O15234 CASC3 Protein CASC3 1 0 RLEQTSVRDPS(1)PEADAPVLGSPEK;RLEQT(0.006)S(0.032)VRDPS(0.963)PEADAPVLGSPEK;RLEQT(0.008)S(0.045)VRDPS(0.947)PEADAPVLGSPEK ;; 177.35 1.89E-15 921470000 1291320 1214030 697603 414433 888500 1089180 1236510 1152100 945980 1613620 TRUE FALSE FALSE 1200805.136 1117825.841 967733.5641 964820.9683 777056.0451 954808.0456 927122.1195 889791.9802 1027978.308 1209559.049 0.992762724 0.924159794 0.800071369 0.797663387 0.642429194 0.789385228 0.766495956 0.735633354 0.849878564 1 20.20604977 -4.659878812 2.292863226 0.778557294 0.991921458 0.353514084 0.086733997 0.308570361 3.011655899 0.022427997 0.094645359 2.19E-05 4.659878812 0.213364164 RLET(ph)PEPGQQGLQAAAR ddPTM_HeLa_A485_30min_R1 1 RLETPEPGQQGLQAAAR 17 1 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6 I3L419 FAM64A Protein FAM64A 1 0 RLET(1)PEPGQQGLQAAAR 81.665 0.0025315 551340000 72394 99686 117590 92721 146550 105910 125040 163930 105870 116180 TRUE FALSE FALSE 88497.79554 111343.4105 161091.4343 97786.11345 131958.9674 111455.2838 98324.18252 123725.9105 127117.1379 87218.46413 1.014668126 1.27660366 1.846987744 1.121162983 1.512970547 1.277886339 1.127332194 1.418574744 1.457456734 1 16.41234597 -6.468921688 24.95123458 1.273848253 1.367639544 0.035188152 0.244057473 1387.480877 641608.929 0.086398569 0.076195957 3.40E-07 6.468921688 0.09379129 RLFDDEAS(ph)VDEPR ddPTM_HeLa_A486_30min_R1 1 RLFDDEASVDEPR 13 1 A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;Q8NI35-5 A0A0U1RR46 INADL InaD-like protein 1 0 RLFDDEAS(1)VDEPR 97.352 0.00060143 172370000 254480 353850 320470 191170 390170 321070 401330 413030 282300 442530 TRUE FALSE FALSE 236642.2661 325809.6373 444564.5665 445053.4212 341231.2404 281459.6478 300912.9892 318992.0854 306769.9913 331717.6076 0.7133847 0.98218976 1.340189837 1.341663544 1.028679915 0.848491733 0.907136016 0.961637483 0.924792607 1 18.33959607 -6.003167106 24.99017375 0.9262288 1.114062904 0.170091902 0.171456876 232.5237358 1834760.512 0.058733981 0.065331796 9.93E-07 6.003167106 0.187834105 RLFFWMQEPK ddPTM_HeLa_A486_30min_R1 2 RLFFWMQEPK 10 1 Q16186 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 0 0 ; ; 140.49 0.00054125 32196000 59937 58995 43039 27220 67681 68032 88259 77580 52445 79497 FALSE FALSE TRUE 55735.72581 54320.02134 59704.85342 63369.53562 59191.81788 59638.90354 66175.66469 59916.72756 56990.97483 59590.43376 0.935313309 0.911556066 1.001920101 1.063417928 0.99331074 1.000813382 1.110508189 1.005475607 0.956377916 1 15.86279313 -4.840274233 4.862354132 1.02150481 0.923466557 0.461470417 0.04031289 0.165133427 6.925976275 0.010903019 0.024361544 1.44E-05 4.840274233 -0.098038253 RLGDS(ph)SLSR ddPTM_HeLa_A485_30min_R1 1 RLGDSSLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RLGDS(0.5)S(0.5)LSR 99.215 0.0012085 117980000 16774 19819 25213 15195 30133 23379 28878 36033 19813 22933 TRUE FALSE FALSE 20505.31843 22136.65965 34540.3379 16025.06437 27132.85272 24603.08829 22707.97939 27195.85025 23789.28736 17216.22515 1.191046135 1.285802169 2.006266623 0.930811733 1.576004756 1.429064041 1.318987129 1.579663952 1.381794624 1 14.07148123 -8.046226989 21.46220341 0.999999994 1.42066669 0.176304676 0.267136387 3053.731771 1417782.658 0.245123176 0.063290532 8.99E-09 8.046226989 0.420666696 RLGDSS(ph)LSR ddPTM_HeLa_A485_30min_R1 6 RLGDSSLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RLGDS(0.091)S(0.885)LS(0.024)R;RLGDS(0.095)S(0.899)LS(0.007)R;RLGDS(0.011)S(0.988)LS(0.001)R;RLGDS(0.042)S(0.548)LS(0.41)R;RLGDS(0.009)S(0.563)LS(0.428)R;RLGDS(0.03)S(0.97)LSR ;;;;; 165.07 6.02E-06 4519530000 2978941 4124250 4060770 2689393 4915260 3971877 5128180 6081580 3450823 3526231 TRUE FALSE FALSE 3641596.148 4606545.161 5563017.806 2836307.73 4425879.456 4179838.338 4032502.45 4590062.969 4143371.523 2647206.507 1.375637351 1.740153308 2.10146726 1.071434254 1.671905627 1.578961946 1.523304827 1.73392705 1.565186362 1 21.33603931 -8.053994702 21.21668887 0.999999997 1.605522344 0.336806659 0.251106301 3035.236537 1192666.497 0.238012039 0.061454444 8.83E-09 8.053994702 0.605522347 RLGDSS(ph)LSR ddPTM_HeLa_A486_30min_R1 4 RLGDSSLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RLGDS(0.095)S(0.905)LSR;RLGDS(0.034)S(0.966)LSR;RLGDS(0.042)S(0.958)LSR;RLGDS(0.048)S(0.952)LSR ;;; 153.74 2.96E-05 4800330000 351956 304347 446776 160049 523807 339372 451432 459830 308119 402975 TRUE FALSE FALSE 327285.7019 280229.4353 619779.6323 372602.1604 458106.2418 297503.7331 338478.9388 355136.747 334827.003 302067.4371 1.083485546 0.927704879 2.05179227 1.233506544 1.516569433 0.984891771 1.12054097 1.175686961 1.108451167 1 18.20451114 -6.266520473 24.97917802 1.091558781 1.36956554 0.199058228 0.28471071 782.5428502 3847049.791 0.101473706 0.092138172 5.41E-07 6.266520473 0.278006759 RLGGLRPES(ph)PESLTSVSR ddPTM_HeLa_A485_30min_R1 5 RLGGLRPESPESLTSVSR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 RLGGLRPES(0.813)PES(0.048)LT(0.059)S(0.073)VS(0.006)R;RLGGLRPES(0.998)PES(0.002)LTSVSR;RLGGLRPES(0.916)PES(0.084)LTSVSR;RLGGLRPES(0.989)PES(0.007)LT(0.004)SVSR;RLGGLRPES(0.977)PES(0.023)LTSVSR ;;;; 235.68 2.50E-45 14034610000 654316 1439680 1208534 450830 1560690 1502705 1737910 2644340 893513 746010 TRUE FALSE FALSE 799866.3368 1608038.052 1655621.018 475457.7013 1405302.224 1581384.31 1366591.331 1995811.469 1072832.863 560043.4363 1.428221965 2.871273812 2.956236803 0.84896576 2.509273625 2.823681536 2.440152393 3.563672636 1.915624385 1 19.0951792 -5.949249333 24.99939112 2.531471395 2.093741371 0.017513496 0.849980882 346.5304017 170696.3819 0.258224381 0.29279886 1.12E-06 5.949249333 -0.437730024 RLGGLRPES(ph)PESLTSVSR ddPTM_HeLa_A486_30min_R1 4 RLGGLRPESPESLTSVSR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 RLGGLRPES(0.966)PES(0.031)LT(0.003)SVSR;RLGGLRPES(0.97)PES(0.029)LTSVSR;RLGGLRPES(0.784)PES(0.105)LT(0.105)S(0.005)VSR;RLGGLRPES(0.555)PES(0.029)LT(0.344)S(0.071)VS(0.001)R ;;; 203.4 2.00E-25 9415900000 1445480 1066320 1203340 529750 2066040 897890 1408300 1548900 745910 1390770 TRUE FALSE FALSE 1344159.316 981820.9197 1669305.475 1233284.772 1806897.998 787117.4609 1055928.445 1196249.282 810566.0794 1042512.14 1.289346441 0.94178368 1.601233608 1.1829932 1.733215307 0.755019947 1.012869207 1.147467964 0.777512365 1 19.99163275 -6.282326651 24.99985013 0.952434109 1.331762676 0.445248692 0.228761266 843.4842195 1009557.977 0.079139252 0.069865355 5.22E-07 6.282326651 0.379328567 RLGRPPKIT(ph)T(ph)T(ph)NENQK ddPTM_HeLa_A486_30min_R1 1 RLGRPPKITTTNENQK 16 3 J3KNV1;O60281-2;O60281 J3KNV1 ZNF292 Zinc finger protein 292 3 0 RLGRPPKIT(1)T(1)T(1)NENQK 41.967 0.02456 53693000 52189 63647 48074 2072.6 66900 43372 31316 53083 50570 16118 TRUE FALSE FALSE 48530.8206 58603.37992 66689.54027 4825.117543 58508.77818 38021.20361 23480.40557 40997.15969 54953.44832 12081.94789 4.016804331 4.850491035 5.519767249 0.399365863 4.842661028 3.146943188 1.943428807 3.393257451 4.548393092 1 13.56056545 -5.193699068 24.99999802 2.922809179 4.801169116 0.313287675 1.369603663 231.4821143 85429.05744 0.358457187 0.62086602 6.40E-06 5.193699068 1.878359937 RLGS(ph)LVDEFK ddPTM_HeLa_A485_30min_R1 1 RLGSLVDEFK 10 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 RLGS(1)LVDEFK 103.85 0.00064779 32496000 63255 63682 56922 81857 73237 92081 113760 105440 53933 118980 TRUE FALSE FALSE 77325.85652 71129.05594 77979.81652 86328.64064 65945.26713 96902.21878 89454.24667 79580.67468 64756.8584 89320.47566 0.865712547 0.796335391 0.873034049 0.966504488 0.738299552 1.084882476 1.001497652 0.890956682 0.724994554 1 16.44670331 -6.247263338 24.99419735 0.93746554 0.853085126 0.165603931 0.103376524 1765.660583 3113090.372 0.03547453 0.035298723 5.66E-07 6.247263338 -0.084380414 RLGS(ph)LVDEFK ddPTM_HeLa_A486_30min_R1 2 RLGSLVDEFK 10 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 RLGS(1)LVDEFK;RLGS(1)LVDEFK ; 94.551 0.0014953 55219000 180605 159373 98902 93465 163332 172846 216140 220600 142522 283170 TRUE FALSE FALSE 167945.5221 146743.7031 137199.5031 217591.2435 142845.3775 151522.0179 162059.4859 170374.1957 154875.9217 212262.3889 0.791216584 0.691331629 0.646367469 1.025105034 0.672966032 0.713842988 0.763486583 0.802658429 0.729643733 1 17.69548923 -10.52971779 2.708234323 1.012794458 0.759576868 0.339125258 0.100667962 25919773.88 26226280.77 2433030.102 0.026680996 2.95E-11 10.52971779 -0.25321759 RLGS(ph)VEAPK ddPTM_HeLa_A485_30min_R1 1 RLGSVEAPK 9 1 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 RLGS(1)VEAPK 61.419 0.01694 228110000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RLGS(ph)VEAPK ddPTM_HeLa_A486_30min_R1 2 RLGSVEAPK 9 1 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 RLGS(1)VEAPK;RLGS(1)VEAPK ; 77.26 0.0050698 260270000 293900 295940 186887 148913 321600 311160 390600 390470 230690 433020 TRUE FALSE FALSE 273299.1277 272488.6366 259254.6514 346676.9896 281261.9292 272772.2428 292867.7487 301568.5049 250686.3949 324588.9735 0.841985249 0.839488272 0.798716754 1.068049188 0.866517202 0.840362012 0.902272636 0.929078094 0.772319504 1 18.30825447 RLGSLLPVLS(ph)PTSLPSPLPATLETPVPAFLK ddPTM_HeLa_A485_30min_R1 1 RLGSLLPVLSPTSLPSPLPATLETPVPAFLK 31 1 P48681 P48681 NES Nestin 1 0 RLGSLLPVLS(0.749)PT(0.125)S(0.125)LPS(0.001)PLPATLETPVPAFLK 131.38 1.23E-06 1152300000 276180 428500 323850 268310 385450 375800 511870 478950 286520 360620 TRUE FALSE FALSE 337615.2882 478609.3475 443655.5915 282967.0959 347073.2446 395476.3069 402504.7929 361486.7615 344021.9359 270724.0707 1.247082638 1.767886196 1.638774086 1.045223261 1.282018417 1.460809546 1.486771353 1.335259035 1.270747499 1 18.04646364 -12.89627824 0.141455648 4.47E-12 1.558136636 0.298969418 0.19202395 129.8333242 1.502719798 38.61807472 1.301639378 1.27E-13 12.89627824 1.558136636 RLHPPS(ph)PVPQGVCPAHR ddPTM_HeLa_A485_30min_R1 2 RLHPPSPVPQGVCPAHR 17 1 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 RLHPPS(1)PVPQGVCPAHR;RLHPPS(1)PVPQGVCPAHR ; 128.01 1.31E-05 527750000 198703 267980 274370 189323 296060 232250 251100 235590 235750 271190 TRUE FALSE FALSE 242903.7968 299317.9299 375870.8805 199665.2361 266583.2269 244410.2509 197450.4337 177811.1831 283062.8626 203587.3239 1.193118472 1.470218893 1.846239114 0.980735108 1.309429398 1.20051802 0.969856226 0.873390247 1.390375674 1 17.63528821 -5.283533088 24.99904644 1.105254486 1.499894901 0.429459702 0.211111536 744.6236834 842540.4841 0.06017424 0.0893361 5.21E-06 5.283533088 0.394640415 RLHPPS(ph)PVPQGVCPAHR ddPTM_HeLa_A486_30min_R1 2 RLHPPSPVPQGVCPAHR 17 1 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 RLHPPS(1)PVPQGVCPAHR;RLHPPS(1)PVPQGVCPAHR ; 129.32 1.18E-05 620910000 333790 342260 324080 104960 395070 335150 339620 336250 298600 320440 TRUE FALSE FALSE 310393.0447 315138.0711 449572.4552 244352.1844 345516.6367 293802.6006 254643.4839 259693.2153 324482.8884 240199.7383 1.292228905 1.311983407 1.871660887 1.017287471 1.438455509 1.223159537 1.060132229 1.08115528 1.350887768 1 17.87387505 -6.061428354 1.129858533 1.13028676 1.432303223 0.245088077 0.215916685 0.707359496 1.901669702 0.103044447 0.112347252 8.68E-07 6.061428354 0.302016463 RLHPPS(ph)PVPQGVCPAHREPLAAFCGDELR ddPTM_HeLa_A485_30min_R1 4 RLHPPSPVPQGVCPAHREPLAAFCGDELR 29 2 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR ;;; 248.15 7.01E-51 3039390000 257042 457207 422507 299764 515983 454465 544235 736889 367309 389351 TRUE FALSE FALSE 314220.1061 510673.3815 578809.9213 316139.3483 464609.9208 478260.0847 427954.7463 556165.8174 441024.5471 292292.9612 1.075017697 1.747128564 1.980239 1.081583857 1.589535098 1.636235381 1.464129497 1.902768425 1.508844227 1 18.15705556 RLHPPS(ph)PVPQGVCPAHREPLAAFCGDELR ddPTM_HeLa_A486_30min_R1 3 RLHPPSPVPQGVCPAHREPLAAFCGDELR 29 2 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR ;; 239.68 2.08E-50 1682810000 285962 240176 267608 140832 419271 283455 369297 370846 227927 341429 TRUE FALSE FALSE 265917.5405 221143.5791 371232.9844 327864.0133 366682.1216 248485.2041 276894.9846 286412.4613 247683.8959 255932.9561 1.0390125 0.864068397 1.45050872 1.281054298 1.432727255 0.970899598 1.081904374 1.119091756 0.967768668 1 17.96540641 -6.311419567 24.99983308 1.038749312 1.210986518 0.233282509 0.167582014 674.4466294 337352.7188 0.063909144 0.056362677 4.88E-07 6.311419567 0.172237206 RLIS(ph)PYK ddPTM_HeLa_A485_30min_R1 3 RLISPYK 7 1 O14929-2;O14929 O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit 1 0 RLIS(0.959)PY(0.041)K;RLIS(0.99)PY(0.01)K;RLIS(0.997)PY(0.003)K ;; 86.898 0.0044159 2403210000 1102420 1083140 923160 1290670 1437170 1278020 1765400 1851080 1097200 1753200 TRUE FALSE FALSE 1347649.526 1209803.801 1264675.3 1361176.034 1294080.309 1344935.151 1388207.868 1397099.728 1317397.976 1316159.505 1.023925687 0.91919239 0.960883005 1.034202943 0.983224528 1.021863342 1.054741361 1.061497274 1.000940973 1 20.32790291 -5.553269992 1.292404488 1.03058683 0.96436359 0.292835815 0.034647408 0.498086106 1.703673977 0.012943572 0.023024729 2.80E-06 5.553269992 -0.06622324 RLIS(ph)PYK ddPTM_HeLa_A486_30min_R1 2 RLISPYK 7 1 O14929-2;O14929 O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit 1 0 RLIS(0.999)PY(0.001)K;RLIS(0.998)PY(0.002)K ; 92.239 0.0037049 2367350000 1419730 1403160 905050 674290 1464930 1506780 1877440 1804320 1138750 2041700 TRUE FALSE FALSE 1320214.258 1291968.491 1255509.598 1569781.197 1281184.819 1320888.803 1407684.654 1393515.724 1237457.767 1530445.031 0.862634222 0.844178305 0.820355892 1.025702436 0.837132203 0.863074973 0.919787791 0.910529745 0.80856074 1 20.5455198 -11.4028846 2.321004351 2.039446177 0.879312655 0.273587392 0.06006654 10409076.38 1758938.762 56216982.62 0.014869505 3.95E-12 11.4028846 -1.160133522 RLIS(ph)PYKK ddPTM_HeLa_A485_30min_R1 2 RLISPYKK 8 2 O14929-2;O14929 O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit 1 0 RLIS(0.996)PY(0.004)KK;RLIS(1)PYKK ; 141.71 0.00028597 1430930000 1753940 1536420 1088770 2239100 2062630 2015050 3059400 3366200 1478920 2888900 TRUE FALSE FALSE 2144097.902 1716090.954 1491551.33 2361416.363 1857267.315 2120554.902 2405734.197 2540634.172 1775725.679 2168750.396 0.988632858 0.791280987 0.687746886 1.088837317 0.856376703 0.977777298 1.10927205 1.171473756 0.818778261 1 21.04843259 -5.769012757 1.211755113 1.028753909 0.83754384 0.201848675 0.132029279 0.666208156 2.064210352 0.054801045 0.079102297 1.70E-06 5.769012757 -0.191210069 RLIS(ph)PYKK ddPTM_HeLa_A486_30min_R1 2 RLISPYKK 8 2 O14929-2;O14929 O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit 1 0 RLIS(0.99)PY(0.01)KK;RLIS(1)PYKK ; 79.23 0.0048636 1433670000 1898780 1751220 938230 936460 1730210 2132620 2767400 2647550 1286320 2881300 TRUE FALSE FALSE 1765685.327 1612446.949 1301537.783 2180126.206 1513190.928 1869519.027 2074967.249 2044760.661 1397819.253 2159803.726 0.817521197 0.746571056 0.602618547 1.009409411 0.700615019 0.865596723 0.960720284 0.946734482 0.647197352 1 21.04246878 -5.257093422 24.99965599 0.869353596 0.724670356 0.243445548 0.12363559 571.1474811 3285453.814 0.033223333 0.055079968 5.53E-06 5.257093422 -0.14468324 RLKEDILENEDEQNS(ph)PPK ddPTM_HeLa_A485_30min_R1 3 RLKEDILENEDEQNSPPK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RLKEDILENEDEQNS(1)PPK;RLKEDILENEDEQNS(1)PPK;RLKEDILENEDEQNS(1)PPK ;; 157.73 3.31E-09 1151690000 1022770 760970 465483 1765040 1113400 1011020 1721830 1584240 787860 2554910 TRUE FALSE FALSE 1250281.658 849958.8219 637684.5321 1861459.666 1002545.987 1063955.444 1353946.954 1195702.656 945976.2753 1918017.957 0.651861289 0.443144351 0.332470575 0.970512116 0.522698958 0.554716102 0.705909426 0.62340535 0.493205119 1 20.8711848 -11.28616962 2.162566002 2.706630087 0.589606663 0.363886948 0.163153531 7899195.585 1137003.708 65856929.62 0.040655032 5.17E-12 11.28616962 -2.117023425 RLKEDILENEDEQNS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 RLKEDILENEDEQNSPPK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RLKEDILENEDEQNS(1)PPK 190.37 1.87E-18 559260000 531110 417500 163040 380640 374600 510460 745120 682770 329830 1017800 TRUE FALSE FALSE 493881.9317 384415.7795 226173.4544 886149.1565 327614.175 447484.6352 558683.0949 527318.1758 358419.93 762936.2552 0.647343639 0.503863562 0.296451313 1.161498291 0.429412251 0.586529519 0.732280176 0.691169376 0.46979014 1 19.541203 -11.22927958 2.221018788 2.239417336 0.61635939 0.215669093 0.221243921 16943770.7 2986998.762 105448272.9 0.053667765 5.90E-12 11.22927958 -1.623057946 RLKEDILENEDEQNS(ph)PPKK ddPTM_HeLa_A485_30min_R1 1 RLKEDILENEDEQNSPPKK 19 3 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RLKEDILENEDEQNS(1)PPKK 200.19 1.68E-25 923880000 418120 267070 128480 721790 406750 420070 737380 763270 279230 1181300 TRUE FALSE FALSE 511129.3515 298301.5133 176010.0985 761219.56 366252.5418 442064.2156 579832.7392 576076.8357 335268.8998 886823.6502 0.576359631 0.336370724 0.198472491 0.858366328 0.412993656 0.498480409 0.653830938 0.649595707 0.378055885 1 19.75828772 -14 0.18687242 3.046470382 0.417154895 0.401134893 0.179628544 138.1843861 1.345211553 105.388853 0.51139262 1.00E-14 14 -2.629315487 RLKEDILENEDEQNS(ph)PPKK ddPTM_HeLa_A486_30min_R1 2 RLKEDILENEDEQNSPPKK 19 3 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RLKEDILENEDEQNS(1)PPKK;RLKEDILENEDEQNS(1)PPKK ; 234.99 1.85E-45 1238330000 884860 599610 209386 598310 474150 857180 1340550 1130730 465560 1667420 TRUE FALSE FALSE 822835.8834 552094.7199 290465.8668 1392895.917 414677.6857 751429.8468 1005130.211 873287.4627 505915.1157 1249887.179 0.658328125 0.441715644 0.232393669 1.114417317 0.331772093 0.60119814 0.804176751 0.698693032 0.404768626 1 20.25336645 -14 0.211928151 2.926926421 0.535856594 0.195521463 0.244228467 246.1931483 2.456810688 202.6526936 0.504993624 1.00E-14 14 -2.391069827 RLKGNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A485_30min_R1 2 RLKGNKHDDGTQSDSENAGAHR 22 3 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 RLKGNKHDDGT(0.379)QS(0.621)DSENAGAHR;RLKGNKHDDGT(0.115)QS(0.885)DSENAGAHR ; 172.8 1.37E-14 91957000 92138 88007 54863 82769 107041 96088 134599 158371 75761 110201 TRUE FALSE FALSE 112633.7802 98298.65309 75159.10674 87290.46089 96383.6222 101119.0191 105840.8241 119530.2639 90965.53778 82729.9188 1.361463686 1.188187472 0.908487616 1.055125669 1.165039487 1.222278718 1.279353656 1.444825109 1.099548254 1 16.33612155 -6.166031987 3.193027263 1.242535465 1.116812203 0.033934574 0.153097924 0.593548044 11.60581698 0.055427563 0.054871954 6.82E-07 6.166031987 -0.125723263 RLKGNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_A486_30min_R1 2 RLKGNKHDDGTQSDSENAGAHR 22 3 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 RLKGNKHDDGT(0.156)QS(0.842)DS(0.002)ENAGAHR;RLKGNKHDDGT(0.099)QS(0.901)DS(0.001)ENAGAHR ; 169.6 2.16E-14 47819000 95909 58481 35813 35874 72080 66807 84970 84032 35838 96943 TRUE FALSE FALSE 89186.27437 53846.75258 49680.75271 83516.48497 63039.05428 58565.03158 63709.60728 64899.74801 38944.4667 72667.84181 1.227314203 0.740998373 0.683669027 1.14929084 0.867495892 0.805927768 0.876723537 0.893101355 0.535924361 1 16.14902944 -5.995464211 24.97314801 0.821015512 0.92782944 0.088532202 0.188439973 398.0571392 2191595.629 0.058351542 0.06591622 1.01E-06 5.995464211 0.106813929 RLLDDISNGYDDS(ph)EDGGHTLGDPSYSYETTEK ddPTM_HeLa_A485_30min_R1 1 RLLDDISNGYDDSEDGGHTLGDPSYSYETTEK 32 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 RLLDDIS(0.006)NGYDDS(0.986)EDGGHT(0.008)LGDPSYSYETTEK 224.01 3.88E-39 303790000 46959 55579 34551 50515 71766 72319 80544 93201 51253 66347 TRUE FALSE FALSE 57404.86754 62078.48058 47332.85269 53274.50654 64620.72505 76105.51101 63335.11642 70343.30862 61539.00698 49807.91393 1.152525031 1.246357771 0.950307872 1.069599233 1.297398746 1.527980295 1.271587413 1.412291804 1.235526689 1 15.60408737 -5.80487118 6.653455872 1.323571268 1.103824318 0.2655639 0.145837374 0.222416769 24.67727178 0.044150969 0.05084353 1.57E-06 5.80487118 -0.219746949 RLLDDISNGYDDS(ph)EDGGHTLGDPSYSYETTEK ddPTM_HeLa_A486_30min_R1 1 RLLDDISNGYDDSEDGGHTLGDPSYSYETTEK 32 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 RLLDDIS(0.008)NGYDDS(0.992)EDGGHTLGDPSYSYETTEK 181.05 6.84E-21 284290000 63888 57553 44632 32641 68224 55534 75850 85069 49611 81213 TRUE FALSE FALSE 59409.78112 52992.29068 61914.70569 75989.89758 59666.70976 48682.77971 56871.52774 65700.64574 53911.32142 60876.73619 0.975902863 0.870485082 1.017050347 1.248258404 0.980123336 0.799694313 0.934207898 1.079240607 0.885581665 1 15.89360339 -4.777465588 24.98651934 0.9954998 0.923193946 0.05572505 0.114610426 707.0832232 1102418.313 0.032478461 0.067951088 1.67E-05 4.777465588 -0.072305854 RLLEDGEDFNLGDALDS(ph)SNSMQTIQK ddPTM_HeLa_A486_30min_R1 1 RLLEDGEDFNLGDALDSSNSMQTIQK 26 1 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 RLLEDGEDFNLGDALDS(0.396)S(0.206)NS(0.396)MQT(0.002)IQK 138.16 1.12E-06 138140000 80463 69267 53079 24949 108290 66714 87576 98554 44026 74533 TRUE FALSE FALSE 74822.95921 63778.03065 73632.6103 58082.53285 94707.25844 58483.50498 65663.55852 76115.40562 47842.20913 55869.45167 1.33924635 1.14155462 1.31794045 1.03961165 1.695152818 1.046788598 1.175303436 1.362379679 0.856321437 1 15.76977204 -7.764760633 24.99998798 0.928160597 1.259009487 0.350698889 0.183061347 95.74690409 720655.7942 0.14599367 0.04375098 1.72E-08 7.764760633 0.33084889 RLLEDGEDFNLGDALDSS(ph)NSMQTIQK ddPTM_HeLa_A485_30min_R1 3 RLLEDGEDFNLGDALDSSNSMQTIQK 26 1 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 RLLEDGEDFNLGDALDS(0.18)S(0.781)NS(0.039)MQTIQK;RLLEDGEDFNLGDALDS(0.249)S(0.743)NS(0.008)MQTIQK;RLLEDGEDFNLGDALDS(0.17)S(0.659)NS(0.17)MQTIQK ;; 253.93 3.81E-62 764410000 220199 285476 230484 216054 412400 311770 461508 681830 296731 321784 TRUE FALSE FALSE 269181.5079 318859.9349 315749.6228 227856.4829 371340.008 328093.7951 362903.0456 514610.1234 356282.1899 241569.1708 1.11430406 1.31995293 1.307077479 0.943234943 1.537199498 1.358177428 1.502273839 2.130280622 1.474866138 1 17.88207682 -6.259605219 1.53570771 1.604886116 1.203706492 0.172191679 0.291357923 0.547557904 2.575940728 0.126828119 0.115196545 5.50E-07 6.259605219 -0.401179624 RLLEDGEDFNLGDALDSS(ph)NSMQTIQK ddPTM_HeLa_A486_30min_R1 1 RLLEDGEDFNLGDALDSSNSMQTIQK 26 1 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 RLLEDGEDFNLGDALDS(0.03)S(0.72)NS(0.246)MQT(0.004)IQK 142.68 4.22E-09 191400000 94205 78109 80546 39540 123790 79945 100360 113610 59327 93493 TRUE FALSE FALSE 87601.71598 71919.35837 111735.5683 92051.11824 108263.1039 70082.19872 75248.8665 87743.48309 64469.51213 70081.74426 1.249993374 1.02622101 1.59436055 1.313482123 1.544811777 1.000006485 1.073729932 1.252016256 0.919918772 1 16.09675106 -6.280995104 24.73470302 1.066422517 1.340037247 0.439274995 0.166940566 777.7694028 983744.153 0.059872757 0.052880197 5.24E-07 6.280995104 0.27361473 RLLEDS(ph)DS(ph)EDEAAPSPLQPALRPNPTAILDEAPKPK ddPTM_HeLa_A486_30min_R1 2 RLLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPK 36 3 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 2 0 RLLEDS(1)DS(1)EDEAAPSPLQPALRPNPTAILDEAPKPK;RLLEDS(1)DS(1)EDEAAPSPLQPALRPNPTAILDEAPKPK ; 206.77 9.37E-30 931880000 485620 435280 228617 280284 425600 542760 690200 666890 328280 721520 TRUE FALSE FALSE 451580.5457 400786.8275 317143.625 652515.3168 372217.2794 475799.7896 517504.6598 515053.7051 356735.5747 540846.6957 0.834951104 0.741035918 0.586383586 1.206470007 0.688212173 0.879731342 0.956841678 0.952309978 0.659587232 1 19.04486019 -5.172102946 24.61362444 0.896213594 0.722815986 0.225867821 0.156494191 94.68956329 26085.00717 0.040817616 0.070698199 6.73E-06 5.172102946 -0.173397607 RLLGPAPEDDGGHNDHSQPQASQDQDSHTLS(ph)PQV ddPTM_HeLa_A485_30min_R1 3 RLLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 34 1 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 0 RLLGPAPEDDGGHNDHSQPQAS(0.001)QDQDS(0.037)HT(0.017)LS(0.946)PQV;RLLGPAPEDDGGHNDHSQPQASQDQDS(0.001)HT(0.01)LS(0.988)PQV;RLLGPAPEDDGGHNDHSQPQASQDQDS(0.023)HT(0.077)LS(0.899)PQV ;; 167.82 1.82E-14 1263860000 232185 342090 343496 210936 406010 334559 411250 513280 335036 303725 TRUE FALSE FALSE 283833.7522 382094.4497 470569.4645 222458.8996 365586.2188 352075.9919 323383.0779 387397.2752 402274.6521 228011.9471 1.24481965 1.67576504 2.063793018 0.975645804 1.603364312 1.544112036 1.418272516 1.699021828 1.764270062 1 17.79874989 -10.95657483 2.643539944 0.572299484 1.557269628 0.258987991 0.281261317 38788931.88 21034121.09 101892767.5 0.071558375 1.11E-11 10.95657483 0.984970144 RLLGPAPEDDGGHNDHSQPQASQDQDSHTLS(ph)PQV ddPTM_HeLa_A486_30min_R1 2 RLLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 34 1 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 0 RLLGPAPEDDGGHNDHSQPQASQDQDSHT(0.023)LS(0.977)PQV;RLLGPAPEDDGGHNDHSQPQASQDQDSHT(0.003)LS(0.997)PQV ; 297.08 3.80E-93 765120000 222544 198317 208970 43776 307520 206290 224620 245031 194874 214070 TRUE FALSE FALSE 206944.8148 182601.6387 289888.7804 101912.7403 268947.9741 180840.0372 168417.7002 189242.7903 211765.8352 160465.4786 1.28965318 1.137949671 1.80654919 0.635106947 1.676048807 1.1269716 1.049557211 1.179336465 1.319697152 1 17.29190343 -13.99999987 0.081173409 0.204052665 1.479526944 0.063029387 0.306613373 755.0564432 4.322173067 107.2824981 9.663198233 1.00E-14 13.99999987 1.27547428 RLLS(ph)FQR ddPTM_HeLa_A485_30min_R1 2 RLLSFQR 7 1 A1E5M1;Q9NP56;Q13946-3;Q13946-2;Q13946 A1E5M1 PDE7B;PDE7A "cAMP-specific 3,5-cyclic phosphodiesterase 7B;High affinity cAMP-specific 3,5-cyclic phosphodiesterase 7A" 1 0 RLLS(1)FQR;RLLS(1)FQR ; 112.11 0.0013658 0 103368 129895 113838 79471 161080 98136 104422 116994 85105 82508 TRUE FALSE FALSE 126361.855 145085.0903 155951.4134 83812.2995 145042.3096 103274.2492 82111.38665 88301.03806 102184.7929 61940.27405 2.040059669 2.342338528 2.517770801 1.353114767 2.341647851 1.667319863 1.325654236 1.425583587 1.649731042 1 15.91859015 -6.381725903 0.33924422 1.039195194 2.484429395 0.564861501 0.322762357 1.361464936 0.341860504 0.398610922 0.722091939 4.15E-07 6.381725903 1.445234201 RLMS(ph)MEMD ddPTM_HeLa_A485_30min_R1 1 RLMSMEMD 8 1 Q9P2B2 Q9P2B2 PTGFRN Prostaglandin F2 receptor negative regulator 1 0 RLMS(1)MEMD 91.701 0.0098158 89881000 117280 132280 110280 98823 119050 117420 132460 133480 118590 183260 TRUE FALSE FALSE 143368.5314 147748.9953 151077.1611 104221.4503 107196.964 123567.9296 104158.8389 100743.8207 142389.9252 137576.6547 1.04209927 1.073939439 1.098130795 0.757551857 0.7791799 0.89817513 0.757096756 0.732274098 1.0349861 1 17.06987615 -5.253798058 24.98377421 0.835188224 1.071644812 0.503517947 0.099238662 433.1519022 1416213.332 0.026236866 0.044362521 5.57E-06 5.253798058 0.236456588 RLMS(ph)MEMD ddPTM_HeLa_A486_30min_R1 2 RLMSMEMD 8 1 Q9P2B2 Q9P2B2 PTGFRN Prostaglandin F2 receptor negative regulator 1 0 RLMS(1)MEMD;RLMS(1)MEMD ; 91.469 0.0099227 150053000 148127 121336.4 147461.3 38425.2 175336.9 137467.2 122583.2 123938.6 131856.1 161071.3 TRUE FALSE FALSE 137744.0622 111721.2618 204562.2645 89455.8075 153344.5111 120507.8945 91911.58681 95720.48634 143285.4929 120737.9981 1.14085097 0.925319813 1.69426583 0.740908487 1.270060076 0.998094191 0.761248226 0.792795043 1.186747297 1 16.88152026 -6.51244353 23.0661553 0.91246492 1.147143244 0.142085012 0.254716344 339.3387614 750087.2319 0.090340033 0.074657923 3.07E-07 6.51244353 0.234678324 RLNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_HeLa_A485_30min_R1 6 RLNECISPVANEMNHLPAHSHDLQR 25 1 P23497-2;P23497-3;P23497;P23497-4;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR ;;;;; 306.51 1.18E-90 4903540000 473611 925437 867092 335250 930989 898999 1084352 1458667 702191 570680 TRUE FALSE FALSE 578964.133 1033658.807 1187865.414 353563.8586 838296.4663 946069.1975 852671.3369 1100926.631 843114.2928 428419.9786 1.35139387 2.412723166 2.772665779 0.825273975 1.956716559 2.208275162 1.990269781 2.569736908 1.967962128 1 18.70866623 -6.00337499 24.98065213 2.051873957 1.878347044 0 0.623050948 895.7224847 6629942.982 0.195876719 0.217649116 9.92E-07 6.00337499 -0.173526912 RLNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_HeLa_A486_30min_R1 6 RLNECISPVANEMNHLPAHSHDLQR 25 1 P23497-2;P23497-3;P23497;P23497-4;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR ;;;;; 324.57 2.19E-106 3407890000 391573 443856 554191 175788 812316 438138 634476 647516 406686 539817 TRUE FALSE FALSE 364125.7548 408683.2341 768788.5969 409243.3478 710427.7527 384084.9882 475723.394 500090.742 441937.8699 404643.3096 0.899868467 1.009983915 1.899916738 1.011368131 1.755688865 0.949193967 1.175661089 1.235880416 1.092166507 1 18.62629122 RLNHS(ph)PPQSSSR ddPTM_HeLa_A485_30min_R1 9 RLNHSPPQSSSR 12 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 RLNHS(0.999)PPQS(0.001)SSR;RLNHS(0.986)PPQS(0.007)S(0.007)SR;RLNHS(0.999)PPQS(0.001)SSR;RLNHS(1)PPQSSSR;RLNHS(0.962)PPQS(0.012)S(0.012)S(0.014)R;RLNHS(0.999)PPQS(0.001)SSR;RLNHS(1)PPQSSSR;RLNHS(0.983)PPQS(0.007)S(0.005)S(0.005)R;RLNHS(0.996)PPQS(0.001)S(0.001)S(0.001)R ;;;;;;;; 124.78 2.57E-05 23462890000 438839 823003 866292 386444 892187 749768 729992 862001 709529 529487 TRUE FALSE FALSE 536457.2216 919246.0417 1186769.46 407554.4572 803357.7296 789024.6931 574023.2457 650593.9032 851924.9621 397495.6354 1.349592735 2.312594051 2.98561633 1.02530549 2.021047926 1.984989577 1.444099493 1.636732193 2.143230985 1 18.60057949 -11.02746911 0.204350271 2.70E-10 2.085683032 0.191132426 0.529387365 57.05485422 1.699587799 29.52459583 1.396187219 9.39E-12 11.02746911 2.085683031 RLNHS(ph)PPQSSSR ddPTM_HeLa_A486_30min_R1 5 RLNHSPPQSSSR 12 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 RLNHS(1)PPQSSSR;RLNHS(0.881)PPQS(0.118)S(0.001)SR;RLNHS(0.998)PPQS(0.001)SSR;RLNHS(0.897)PPQS(0.083)S(0.017)S(0.002)R;RLNHS(1)PPQSSSR ;;;; 181.97 4.38E-13 13604200000 2630987 2845481 2584076 553840 3288709 2101616 2821666 2904071 2222464 2371107 TRUE FALSE FALSE 2446568.398 2619994.722 3584699.431 1289367.51 2876208.451 1842339.986 2115655.322 2242877.429 2415108.969 1777366.374 1.376513269 1.474088157 2.016860161 0.725437101 1.618241739 1.036556116 1.190331579 1.261910578 1.358813244 1 20.76130967 -5.256317281 24.99789771 1.195037965 1.60764725 0.366867546 0.270705656 491.6766299 2399572.456 0.070856808 0.118117068 5.54E-06 5.256317281 0.412609285 RLNQVIFPVSYNDK(ac)FYK ddPTM_HeLa_A485_30min_R1 2 RLNQVIFPVSYNDKFYK 17 2 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6;A0A087WWJ2;F8WCK0;C9J5J3;A0A0D9SF32 C9J5D1 NAA50 N-alpha-acetyltransferase 50 0 1 ; RLNQVIFPVSYNDK(1)FYK;RLNQVIFPVSYNDK(1)FYK 206.74 4.37E-18 143487000 105055 117878 111362 109220 140753 129595 151166 152435 87910 137146 FALSE TRUE FALSE 128424.1223 131662.8067 152559.438 115186.412 126739.1371 136380.3938 118868.1492 115050.0772 105552.7306 102958.0262 1.247344448 1.278800804 1.481763429 1.118770593 1.230978699 1.324621293 1.154530187 1.117446415 1.025201575 1 16.65169678 -7.294544346 1.005671432 0.993110539 1.287483491 0.597276628 0.087549017 0.387119667 0.696632338 0.079754333 0.031696449 5.08E-08 7.294544346 0.294372952 RLNQVIFPVSYNDK(ac)FYK ddPTM_HeLa_A486_30min_R1 1 RLNQVIFPVSYNDKFYK 17 2 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6;A0A087WWJ2;F8WCK0;C9J5J3;A0A0D9SF32 C9J5D1 NAA50 N-alpha-acetyltransferase 50 0 1 RLNQVIFPVSYNDK(1)FYK 186.75 3.35E-13 70955000 41607 51980 44428 21090 63845 57647 62337 62521 47160 58844 FALSE TRUE FALSE 38690.56416 47860.91549 61631.71142 49098.58583 55836.96477 50535.09925 46739.62327 48286.33312 51247.86677 44109.07939 0.877156465 1.085058137 1.397256807 1.113117447 1.265883703 1.145684742 1.059637243 1.094702809 1.161843944 1 15.42878803 -6.643934325 6.327721621 1.087389323 1.160803756 0.055839614 0.130179225 0.699342989 36.01147675 0.05204069 0.040023991 2.27E-07 6.643934325 0.073414433 RLNS(ph)PIGR ddPTM_HeLa_A485_30min_R1 1 RLNSPIGR 8 1 C9J4M6;C9J2Y9;P30876 C9J4M6 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 1 0 RLNS(1)PIGR 65.056 0.013899 199230000 146150 188330 170650 109010 199680 181690 197540 228710 171470 144890 TRUE FALSE FALSE 178660.5633 210353.5552 233780.5363 114964.9403 179799.1581 191203.0075 155333.9652 172618.5139 205882.4562 108771.5895 1.642529673 1.933901639 2.149279397 1.056939048 1.652997432 1.757839601 1.428074794 1.586981625 1.892796245 1 16.73094226 -11.53147249 0.326556378 8.36E-46 1.709761305 0.32822806 0.28534851 69.48171728 2.620954905 50.57679341 0.262301462 2.94E-12 11.53147249 1.709761305 RLNTILAQIMPFLSQEHQQQVAQAVER ddPTM_HeLa_A485_30min_R1 1 RLNTILAQIMPFLSQEHQQQVAQAVER 27 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 0 0 168.72 1.28E-22 9669900 2770.7 5292.9 6019.8 2972.3 6900 5895.2 7246.8 7811 5116.2 4625.7 FALSE FALSE TRUE 3387.032656 5911.858613 8246.774525 3134.669223 6213.011773 6203.863556 5698.461979 5895.340003 6142.974411 3472.59812 0.975359814 1.702430978 2.374813969 0.902687013 1.789153699 1.786519298 1.6409794 1.697674133 1.768985123 1 11.76179974 -10.40515341 6.360371591 0.999894383 1.641472611 0.180634881 0.39915942 0.000579703 5.42E-05 0.374778006 0.090882273 3.93E-11 10.40515341 0.641578228 RLNTILAQIMPFLSQEHQQQVAQAVER ddPTM_HeLa_A486_30min_R1 1 RLNTILAQIMPFLSQEHQQQVAQAVER 27 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 0 0 109.41 4.94E-08 6258500 2936.6 3067.1 2954 589.53 5081.3 2914.4 3647.2 2916.2 3108.4 3221.2 FALSE FALSE TRUE 2730.759505 2824.051826 4097.867911 1372.455633 4443.955973 2554.850959 2734.631984 2252.24492 3377.838615 2414.590554 1.13094102 1.169577932 1.697127451 0.568400978 1.840459438 1.058088692 1.132544803 0.932764736 1.398928116 1 11.23756285 RLNVWDLSK ddPTM_HeLa_A485_30min_R1 1 RLNVWDLSK 9 1 Q16576;E9PC52;Q16576-2;H0YEU5;Q5JP02;H0YCT5;H0YF10;H0YDK2;Q09028-4;Q09028-3;Q09028-2;Q09028 Q16576;Q09028-4 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 0 0 86.624 0.0099922 101560000 143140 162690 139470 160710 200720 210220 254410 343570 152960 206680 FALSE FALSE TRUE 174980.9992 181715.1803 191065.7568 169489.1804 180735.612 221226.7941 200053.2252 259308.9188 183657.669 155158.4797 1.127756598 1.171158551 1.231423234 1.092361698 1.164845211 1.425811819 1.289347676 1.671251996 1.183677936 1 17.24338302 -6.2451885 22.3846911 1.354429231 1.158754331 0.161590119 0.165929025 289.862937 399269.0065 0.051819619 0.051601102 5.69E-07 6.2451885 -0.1956749 RLPALS(ph)HS(ph)EGEEDEDEEEDEGKGWSSEK ddPTM_HeLa_A486_30min_R1 1 RLPALSHSEGEEDEDEEEDEGKGWSSEK 28 2 A0A5F9ZH11;P55201-3;P55201;P55201-2;P55201-4;A0A5F9ZHX4;A0A5F9ZHW9 A0A5F9ZH11 BRPF1 Peregrin 2 0 RLPALS(1)HS(1)EGEEDEDEEEDEGKGWSSEK 99.143 0.00079055 508630000 104610 101610 53533 62605 94193 132500 150790 144820 78342 188900 TRUE FALSE FALSE 97277.37921 93558.05354 74262.41126 145747.6039 82378.43563 116153.4972 113060.7471 111847.6474 85132.74764 141598.2105 0.686995824 0.660729067 0.524458685 1.029303996 0.581775966 0.820303426 0.798461695 0.789894498 0.601227567 1 17.11144351 -14 0.210260588 2.260486468 0.689079104 0.25259349 0.140103751 209.549854 2.089297842 112.1348701 0.292027418 1.00E-14 14 -1.571407363 RLPATLLNAFPTAPS(ph)PRPPR ddPTM_HeLa_A485_30min_R1 3 RLPATLLNAFPTAPSPRPPR 20 2 Q93015;Q93015-2 Q93015 NAT6 N-acetyltransferase 6 1 0 RLPATLLNAFPTAPS(1)PRPPR;RLPATLLNAFPTAPS(1)PRPPR;RLPATLLNAFPTAPS(1)PRPPR ;; 206.69 7.92E-27 2262520000 360255 486448 470463 345493 572197 556506 626570 709320 454951 545529 TRUE FALSE FALSE 440392.4819 543333.8621 644506.8413 364366.4078 515227.0576 585643.7936 492698.2009 535358.1578 546255.4926 409538.66 1.075337996 1.326697367 1.573738707 0.889699663 1.258066961 1.43000857 1.203056632 1.307222517 1.333831323 1 18.64364012 -10.08483378 4.928930647 0.99999167 1.270043224 0.168917963 0.177110913 1.60E-05 2.97E-06 0.169303112 0.04106077 8.23E-11 10.08483378 0.270051554 RLPATLLNAFPTAPS(ph)PRPPR ddPTM_HeLa_A486_30min_R1 2 RLPATLLNAFPTAPSPRPPR 20 2 Q93015;Q93015-2 Q93015 NAT6 N-acetyltransferase 6 1 0 RLPATLLNAFPTAPS(1)PRPPR;RLPATLLNAFPTAPS(1)PRPPR ; 232.44 1.21E-36 1549010000 270250 317080 307220 110679 361800 273910 321950 350920 297930 352800 TRUE FALSE FALSE 251306.8706 291953.426 426183.8116 257666.3054 316419.6703 240117.7691 241394.7048 271023.1765 323754.8123 264456.5837 0.950276477 1.103974883 1.611545478 0.974323656 1.196490048 0.907966691 0.912795217 1.024830514 1.224226706 1 18.01267137 RLPDAHSDYAR ddPTM_HeLa_A485_30min_R1 4 RLPDAHSDYAR 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 0 ;;; ;;; 145.14 1.28E-06 661510000 128446 191191 194564 127502 207305 172446 211593 229010 165784 155416 FALSE FALSE TRUE 157018.3696 213549.1243 266541.3201 134467.1114 186664.9863 181475.0059 166384.427 172844.9384 199055.3281 116673.6514 1.345791168 1.830311486 2.284503115 1.152506241 1.599889813 1.555406929 1.426066854 1.481439351 1.706086385 1 16.83211927 -11.84882072 0.181145855 1.17E-10 1.756181492 0.273555215 0.291016214 74.3515453 1.458403866 30.5313368 1.007333764 1.42E-12 11.84882072 1.756181492 RLPDAHSDYAR ddPTM_HeLa_A486_30min_R1 4 RLPDAHSDYAR 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 0 ;;; ;;; 155.02 4.98E-07 551303000 156857 159326 142433 50094.2 176946 132434 153496 159640 122359 150479 FALSE FALSE TRUE 145862.1343 146700.4275 197586.8721 116621.8292 154751.7827 116095.6396 115089.6773 123293.4569 132965.1766 112798.0789 1.29312605 1.300557854 1.7516865 1.033899073 1.371936332 1.029234191 1.020315934 1.093045716 1.178789372 1 16.78338297 -5.803165741 1.415808892 1.074197086 1.409792914 0.402633459 0.171628523 0.412950386 1.728353028 0.065323075 0.087392558 1.57E-06 5.803165741 0.335595827 RLPIFSRLS(ph)ISDD ddPTM_HeLa_A485_30min_R1 2 RLPIFSRLSISDD 13 2 Q07352;P47974 Q07352 ZFP36L1;ZFP36L2 "Zinc finger protein 36, C3H1 type-like 1;Zinc finger protein 36, C3H1 type-like 2" 1 0 RLPIFSRLS(1)ISDD;RLPIFS(0.006)RLS(0.993)ISDD ; 124.25 2.30E-05 242536000 78455 178196 148446 66444 220609 204415 233108 391400 117481 98104 TRUE FALSE FALSE 95907.04408 199034.4721 203362.3528 70073.66747 198644.3934 215117.8533 183302.5715 295408.5363 141058.3591 73648.47827 1.302227097 2.702492662 2.761256682 0.951461172 2.697196168 2.920873022 2.48888471 4.011060965 1.915292242 1 16.1683681 RLPIFSRLS(ph)ISDD ddPTM_HeLa_A486_30min_R1 1 RLPIFSRLSISDD 13 2 Q07352;P47974 Q07352 ZFP36L1;ZFP36L2 "Zinc finger protein 36, C3H1 type-like 1;Zinc finger protein 36, C3H1 type-like 2" 1 0 RLPIFS(0.006)RLS(0.993)IS(0.001)DD 91.355 0.0010712 70404000 36840 22730 43836 23000 78719 30513 47186 61654 17273 35467 TRUE FALSE FALSE 34257.70624 20928.79202 60810.47317 53545.16236 68845.32899 26748.61629 35379.56372 47616.7301 18770.23755 26585.83235 1.288570009 0.787215978 2.287326286 2.014048748 2.589549505 1.006122958 1.330767578 1.791056585 0.70602407 1 14.69837001 -7.761473168 24.99999775 0.85301177 1.643300168 0.254727525 0.536194031 1.321690524 970553.3298 0.450068811 0.144665463 1.73E-08 7.761473168 0.790288398 RLPNNHIGISFIPR ddPTM_HeLa_A485_30min_R1 2 RLPNNHIGISFIPR 14 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 167.98 6.08E-08 314700000 201810 290360 280830 169048 317440 263500 292040 314570 247370 285250 FALSE FALSE TRUE 246701.9383 324315.0762 384720.7033 178282.6642 285834.559 277296.4526 229643.2683 237421.2143 297014.89 214142.4246 1.152046068 1.514483068 1.796564618 0.832542475 1.334787161 1.294916003 1.072385673 1.108707042 1.386996951 1 17.70821112 -5.258907643 24.99983813 1.16257508 1.490376409 0.348157971 0.21277318 262.2955551 2590041.995 0.058056101 0.094930822 5.51E-06 5.258907643 0.32780133 RLPNNHIGISFIPR ddPTM_HeLa_A486_30min_R1 2 RLPNNHIGISFIPR 14 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 220.69 2.79E-22 239620000 226090 244370 239460 40147 290840 194473 257640 249890 223648 203891 FALSE FALSE TRUE 210242.2585 225005.2312 332185.325 93464.24492 254360.1352 170480.8985 193175.747 192995.5021 243033.9887 152835.3665 1.375612617 1.472206574 2.173484663 0.611535452 1.664275364 1.115454508 1.263946634 1.262767293 1.590168521 1 17.2216189 -5.251759112 24.99944718 1.242953618 1.653611729 0.27369001 0.339607771 991.7831392 2561290.895 0.088553069 0.150916314 5.60E-06 5.251759112 0.410658111 RLPQDHADSCVVS(ph)S(ph)DDEELSR ddPTM_HeLa_A485_30min_R1 2 RLPQDHADSCVVSSDDEELSR 21 1 P78317;D6RA71 P78317 RNF4 E3 ubiquitin-protein ligase RNF4 2 0 RLPQDHADS(0.012)CVVS(0.995)S(0.992)DDEELSR;RLPQDHADS(0.001)CVVS(1)S(0.999)DDEELSR ; 162.6 8.04E-14 5851600000 1411650 1610270 1756610 1499540 2184970 1364580 1759120 1562750 1844720 1995500 TRUE FALSE FALSE 1725666.672 1798577.069 2406453.138 1581456.073 1967426.715 1436027.299 1383269.641 1179483.112 2214938.383 1498058.574 1.151935379 1.200605303 1.606381205 1.055670386 1.313317616 0.958592223 0.92337487 0.787341118 1.478539238 1 20.5146626 -6.260504967 24.97605514 1.009641141 1.269243703 0.230082769 0.214269408 118.6855314 3172384.513 0.071625699 0.067743494 5.49E-07 6.260504967 0.259602561 RLPQDHADSCVVS(ph)S(ph)DDEELSR ddPTM_HeLa_A486_30min_R1 3 RLPQDHADSCVVSSDDEELSR 21 1 P78317;D6RA71 P78317 RNF4 E3 ubiquitin-protein ligase RNF4 2 0 RLPQDHADS(0.014)CVVS(0.992)S(0.992)DDEELS(0.002)R;RLPQDHADSCVVS(1)S(1)DDEELSR;RLPQDHADS(0.044)CVVS(0.982)S(0.974)DDEELSR ;; 148.1 7.16E-10 6447430000 975680 1484090 1169040 332366 1577480 1329920 1457560 1437650 1165600 1235860 TRUE FALSE FALSE 907289.8704 1366485.303 1621723.596 773764.8448 1379617.749 1165847.992 1092863.072 1110328.479 1266635.146 926392.6119 0.979379432 1.475060666 1.750579155 0.835245052 1.489236563 1.25848153 1.179697525 1.198550662 1.367276822 1 19.82126422 -13.33035484 0.209304019 7.32E-12 1.331852053 0.096845211 0.249187172 252.1921431 3.240302842 106.3986785 0.538315516 4.67E-14 13.33035484 1.331852053 RLPQDHADSCVVS(ph)S(ph)DDEELSRDR ddPTM_HeLa_A485_30min_R1 1 RLPQDHADSCVVSSDDEELSRDR 23 2 P78317;D6RA71 P78317 RNF4 E3 ubiquitin-protein ligase RNF4 2 0 RLPQDHADS(0.089)CVVS(0.931)S(0.975)DDEELS(0.005)RDR 51.479 0.023729 782670000 81883 114580 124800 67233 221130 138140 164590 198510 141070 112730 TRUE FALSE FALSE 100097.5909 127979.1343 170968.7134 70905.76855 199113.5208 145372.7968 129424.0019 149825.1112 169381.455 84628.48564 1.182788397 1.512246536 2.020226547 0.83784754 2.352795507 1.71777618 1.529319601 1.770386296 2.001470944 1 16.36885573 -4.372512357 3.789896043 1.67926583 1.178886521 0.093404536 0.433668534 0.513957601 11.78146655 0.103425519 0.557376193 4.24E-05 4.372512357 -0.500379309 RLPS(ph)SPASPSPK ddPTM_HeLa_A485_30min_R1 2 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 RLPS(0.608)S(0.392)PASPSPK;RLPS(0.5)S(0.5)PASPSPK ; 94.487 0.00099057 2019220000 965920 1132360 893630 1108420 1199310 1280690 1599950 1721750 1069510 1776520 TRUE FALSE FALSE 1180785.572 1264779.652 1224220.924 1168970.178 1079902.485 1347744.948 1258107.612 1299488.113 1284150.847 1333666.258 0.885368108 0.948347942 0.91793649 0.876508775 0.809724681 1.010556381 0.943345162 0.97437279 0.962872712 1 20.34696626 -6.28344934 24.99785483 0.974447443 0.892025055 0.593403548 0.037363377 675.6011043 767312.78 0.013907178 0.012275075 5.21E-07 6.28344934 -0.082422388 RLPS(ph)SPASPSPK ddPTM_HeLa_A486_30min_R1 2 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 RLPS(0.5)S(0.5)PASPSPK;RLPS(0.636)S(0.364)PASPSPK ; 113.4 0.00019397 1566990000 723310 744210 523340 258650 872300 712300 799020 787090 638150 918520 TRUE FALSE FALSE 672609.7042 685236.0892 725991.2635 602150.2714 762888.0001 624423.6681 599096.7448 607886.7891 693465.3558 688516.6134 0.97689684 0.995235374 1.054428099 0.874561717 1.108016837 0.906911549 0.870126781 0.882893422 1.007187542 1 19.39313194 RLPSS(ph)PAS(ph)PSPK ddPTM_HeLa_A486_30min_R1 1 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.454)S(0.55)PAS(0.678)PS(0.318)PK 57.434 0.01686 22657000 62305 59091 30852 33920 54487 54952 78711 75811 46355 114370 TRUE FALSE FALSE 57937.74124 54408.41395 42798.72065 78967.47422 47652.73239 48172.58095 59016.67528 58550.49024 50373.08872 85731.00758 0.675808472 0.634641018 0.499221015 0.921107502 0.555840107 0.561903824 0.688393581 0.682955816 0.587571407 1 16.38752948 -10.36569333 3.515189372 1.002074447 0.646070326 0.485464824 0.109555725 38264043.97 59337476.53 823603.5215 0.027416783 4.31E-11 10.36569333 -0.356004121 RLPSS(ph)PASPSPK ddPTM_HeLa_A485_30min_R1 2 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 RLPS(0.184)S(0.816)PASPSPK;RLPS(0.31)S(0.69)PASPSPK ; 151.11 6.86E-08 2303910000 1048080 1207550 900360 1078190 1237510 1275800 1630330 1749010 1038340 1691470 TRUE FALSE FALSE 1281221.78 1348762.468 1233440.631 1137088.79 1114299.159 1342598.915 1281996.677 1320062.555 1246725.314 1269817.658 1.008980913 1.062170194 0.971352558 0.895474072 0.877526905 1.057316306 1.009591156 1.039568592 0.981814441 1 20.27618991 RLPSS(ph)PASPSPK ddPTM_HeLa_A486_30min_R1 3 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 RLPS(0.11)S(0.89)PASPSPK;RLPS(0.127)S(0.873)PASPSPK;RLPS(0.214)S(0.786)PASPSPK ;; 153.48 1.54E-06 1344260000 2010550 2118410 1452640 732550 2460810 2112890 2369900 2330240 1830590 2653870 TRUE FALSE FALSE 1869620.827 1950539.476 2015141.111 1705413.421 2152152.264 1852223.114 1776925.954 1799695.221 1989267.015 1989323.678 0.939827363 0.980503825 1.012977995 0.857283025 1.081851228 0.931081822 0.893231189 0.904676921 0.999971516 1 20.9238466 RLPSS(ph)PASPSPKGT(ph)PEKANER ddPTM_HeLa_A485_30min_R1 1 RLPSSPASPSPKGTPEKANER 21 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.329)S(0.407)PAS(0.132)PS(0.136)PKGT(0.996)PEKANER 137.42 2.90E-06 336020000 80043 62446 35640 174410 113320 107890 201150 226810 66049 289700 TRUE FALSE FALSE 97848.2892 69748.51649 48824.7191 183937.5767 102037.4629 113538.9536 158172.6593 171184.4919 79304.42846 217483.1215 0.449912106 0.320707722 0.224498889 0.84575564 0.469174169 0.52205869 0.727287056 0.787116217 0.364646359 1 17.73054391 -9.451516613 0.094544504 1.646143326 1.37E-16 0.41756226 0.184331987 46.50708293 1.109662152 13.76787491 5.888580657 3.54E-10 9.451516613 -1.646143326 RLPSS(ph)PASPSPKGT(ph)PEKANER ddPTM_HeLa_A486_30min_R1 2 RLPSSPASPSPKGTPEKANER 21 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.419)S(0.526)PAS(0.028)PS(0.029)PKGT(0.999)PEKANER;RLPS(0.437)S(0.531)PAS(0.015)PS(0.018)PKGT(0.999)PEKANER ; 155.09 4.58E-09 1311970000 411870 327490 168372 594060 499180 588120 1014890 899350 296470 1107600 TRUE FALSE FALSE 383000.0399 301538.4997 233570.1476 1383001.702 436568.1897 515563.734 760953.7876 694587.6377 322168.2583 830249.7507 0.461307022 0.363190112 0.281325164 1.665765875 0.525827547 0.620974271 0.916536002 0.836600839 0.388037766 1 19.66318586 RLPSSPASPS(ph)PK ddPTM_HeLa_A485_30min_R1 3 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 RLPSSPAS(0.239)PS(0.761)PK;RLPSSPAS(0.136)PS(0.863)PK;RLPSS(0.002)PAS(0.352)PS(0.646)PK ;; 106.31 0.00031707 6276100000 3297510 3077570 1935670 4453450 2976960 3171290 4563350 4299090 2600000 6365890 TRUE FALSE FALSE 4031029.723 3437465.04 2651754.883 4696730.697 2680563.41 3337333.841 3588352.993 3244731.437 3121796.151 4778990.779 0.843489747 0.719286812 0.554877589 0.982787144 0.560905751 0.698334438 0.750859995 0.678957459 0.653233349 1 22.18827455 -10.02632337 5.778963799 1.000000675 0.713947238 0.334766439 0.120135877 9.92E-07 1.67E-07 0.110409476 0.026778168 9.41E-11 10.02632337 -0.286053438 RLPSSPASPS(ph)PK ddPTM_HeLa_A486_30min_R1 3 RLPSSPASPSPK 12 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 RLPSSPAS(0.047)PS(0.953)PK;RLPSSPAS(0.016)PS(0.984)PK;RLPS(0.098)S(0.078)PAS(0.188)PS(0.637)PK ;; 108.25 0.00028329 5368445000 4945550 4367580 2458550 2311209 4263860 4824420 5912260 5406810 3557540 7929110 TRUE FALSE FALSE 4598892.484 4021477.054 3410566.402 5380611.354 3729046.92 4229232.112 4432950.014 4175797.393 3865910.432 5943609.246 0.773754178 0.676605222 0.573820765 0.905276766 0.627404455 0.711559582 0.745834699 0.702569301 0.650431459 1 22.50290784 -10.16013974 4.56833707 1.000036652 0.707201178 0.511629809 0.085739725 111580905.2 3.86300899 50044.90811 0.019845217 6.92E-11 10.16013974 -0.292835473 RLPSSPASPS(ph)PKGT(ph)PEKANER ddPTM_HeLa_A485_30min_R1 1 RLPSSPASPSPKGTPEKANER 21 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.014)S(0.016)PAS(0.421)PS(0.549)PKGT(1)PEKANER 80.711 0.0012941 231890000 142420 105820 73029 303570 199230 200680 375610 401220 117590 506270 TRUE FALSE FALSE 174100.8377 118194.7285 100045.4661 320153.2604 179393.9617 211187.2945 295357.855 302820.1659 141189.2344 380066.2062 0.458080289 0.310984577 0.26323168 0.842361818 0.472007136 0.555659227 0.777122118 0.796756357 0.371485894 1 18.53589123 -6.948648457 0.120192722 1.256555008 1.75E-11 0.41377292 0.183462698 9.164326711 0.845173269 3.497102473 4.513653616 1.13E-07 6.948648457 -1.256555008 RLPSSPASPS(ph)PKGT(ph)PEKANER ddPTM_HeLa_A486_30min_R1 1 RLPSSPASPSPKGTPEKANER 21 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.014)S(0.015)PAS(0.06)PS(0.918)PKGT(0.994)PEKANER 43.895 0.02631 336520000 49857 39787 24440 62274 63896 68729 104140 99500 39584 134790 TRUE FALSE FALSE 46362.28176 36634.13322 33903.82253 144977.0192 55881.56787 60249.91477 78083.07052 76846.02207 43015.17299 101037.7067 0.458861185 0.362578828 0.335556137 1.434880343 0.553076368 0.596311187 0.772811192 0.760567758 0.425733861 1 16.62453427 RLPT(ph)PEQIFQNIK ddPTM_HeLa_A485_30min_R1 1 RLPTPEQIFQNIK 13 1 Q9H9L7-2;Q9H9L7;H0YEQ5 Q9H9L7-2 AKIRIN1 Akirin-1 1 0 RLPT(1)PEQIFQNIK 122.31 4.22E-05 28677000 26664 36586 28928 32243 45267 28467 41902 49076 33909 43074 TRUE FALSE FALSE 32595.31481 40864.41444 39629.67099 34004.35345 40760.05854 29957.4881 32949.29539 37040.03405 40714.22527 32336.44452 1.008005527 1.263726271 1.225542003 1.051579849 1.260499079 0.926431107 1.018952327 1.145457845 1.259081692 1 14.98087344 -6.237049757 24.97490088 1.075886139 1.164939222 0.1386267 0.11392086 1736.856097 1778537.426 0.038326695 0.038304377 5.79E-07 6.237049757 0.089053082 RLPVPRPSFDAS(ph)AS(ph)EEEEEEEEEEDEDEEEEVAAWR ddPTM_HeLa_A485_30min_R1 2 RLPVPRPSFDASASEEEEEEEEEEDEDEEEEVAAWR 36 2 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 2 0 RLPVPRPS(0.083)FDAS(0.917)AS(0.999)EEEEEEEEEEDEDEEEEVAAWR;RLPVPRPS(0.184)FDAS(0.858)AS(0.958)EEEEEEEEEEDEDEEEEVAAWR ; 207.6 9.31E-30 316480000 42028.7 52524 55246 41393 71870 64918 82484 84682 47756 60966 TRUE FALSE FALSE 51377.83932 58666.2249 75683.79438 43654.19478 64714.37045 68317.0061 64860.61957 63913.60672 57340.19116 45768.2982 1.1225639 1.281809183 1.653629201 0.953808564 1.413956232 1.492670883 1.417151656 1.396460197 1.252836426 1 15.48206103 -8.095863993 4.445901025 1.000054627 1.346377469 0.23909541 0.183401726 0.739796904 30.94819147 0.174661344 0.04568198 8.02E-09 8.095863993 0.346322842 RLPVPRPSFDAS(ph)AS(ph)EEEEEEEEEEDEDEEEEVAAWR ddPTM_HeLa_A486_30min_R1 3 RLPVPRPSFDASASEEEEEEEEEEDEDEEEEVAAWR 36 2 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 2 0 RLPVPRPS(0.162)FDAS(0.849)AS(0.989)EEEEEEEEEEDEDEEEEVAAWR;RLPVPRPS(0.019)FDAS(0.982)AS(0.999)EEEEEEEEEEDEDEEEEVAAWR;RLPVPRPS(0.637)FDAS(0.695)AS(0.668)EEEEEEEEEEDEDEEEEVAAWR ;; 150.57 7.99E-10 399846000 35053.2 33498.3 34628.1 15693 49278 37145.3 50661 47452 31983.2 45752 TRUE FALSE FALSE 32596.15169 30843.77271 48037.02769 36534.09708 43097.09374 32562.69055 37985.08196 36648.21547 34755.52953 34295.4014 0.950452549 0.899355932 1.400684224 1.065276847 1.256643514 0.949476875 1.107585286 1.06860436 1.013416613 1 15.06572752 -7.561998707 0.960634158 0.998943834 1.101322309 0.04909074 0.14186613 1.870784972 3.311043952 0.135045371 0.049851286 2.74E-08 7.561998707 0.102378475 RLQLS(ph)PWESSVVNR ddPTM_HeLa_A485_30min_R1 3 RLQLSPWESSVVNR 14 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 RLQLS(1)PWESSVVNR;RLQLS(1)PWESSVVNR;RLQLS(1)PWESSVVNR ;; 210.57 1.62E-22 847340000 244999 392619 318430 208828 465670 376270 382689 589010 270946 269993 TRUE FALSE FALSE 299498.1823 438532.3767 436230.508 220235.7449 419306.2597 395970.9154 300924.3689 444554.374 325322.3769 202688.714 1.477626339 2.163575703 2.152219033 1.086571327 2.068720313 1.953591335 1.484662678 2.193286273 1.605034492 1 17.62890623 -8.018331899 23.80747853 0.999999979 1.826513152 0.336248815 0.348586982 742.7981188 964666.2875 0.325232861 0.083974764 9.59E-09 8.018331899 0.826513173 RLQLS(ph)PWESSVVNR ddPTM_HeLa_A486_30min_R1 3 RLQLSPWESSVVNR 14 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 RLQLS(1)PWESSVVNR;RLQLS(1)PWESSVVNR;RLQLS(1)PWESSVVNR ;; 236.16 2.15E-35 557930000 273692 251398 245254 100831 342252 205517 255638 275603 183309 275524 TRUE FALSE FALSE 254507.6041 231476.3069 340222.9169 234739.6637 299323.5628 180162.4021 191674.6685 212854.2133 199198.3717 206530.997 1.232297368 1.120782402 1.647321331 1.136583211 1.44929123 0.872326211 0.928067318 1.030616306 0.964496248 1 17.6559988 -6.266148854 24.99946989 0.959075109 1.314639645 0.592883331 0.148385446 287.008313 1523531.396 0.050280609 0.045773707 5.42E-07 6.266148854 0.355564537 RLQSIGTENTEENRR ddPTM_HeLa_A485_30min_R1 4 RLQSIGTENTEENRR 15 2 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 221.85 1.08E-33 1254501000 309699.8 533492 356446 324373.2 540395 495125 615862 883786 373336 432193 FALSE FALSE TRUE 378591.4521 595879.2486 488310.2084 342092.8866 486591.3764 521048.9794 484278.0526 667036.0978 448261.1108 324455.239 1.16685264 1.836553019 1.505015637 1.054360804 1.499718044 1.605919451 1.492588173 2.055864777 1.381580745 1 18.30765994 -5.996073135 24.96136371 1.570108364 1.411499664 0.010494145 0.313150641 391.0815544 2485898.798 0.095990902 0.108368113 1.01E-06 5.996073135 -0.1586087 RLQSIGTENTEENRR ddPTM_HeLa_A486_30min_R1 1 RLQSIGTENTEENRR 15 2 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 151.44 3.86E-08 457880000 171520 125290 97982 49241 191200 127250 157720 162370 104640 187120 FALSE FALSE TRUE 159497.3337 115361.5641 135923.2544 114635.5365 167217.9131 111551.1888 118256.7878 125401.8955 113710.2795 140263.9341 1.137122916 0.822460634 0.969053487 0.817284481 1.192166142 0.795294881 0.843101889 0.894042338 0.810687938 1 17.09778457 RLQTQVFK ddPTM_HeLa_A485_30min_R1 2 RLQTQVFK 8 1 P46781;B5MCT8;C9JM19 P46781 RPS9 40S ribosomal protein S9 0 0 ; ; 88.177 0.021029 32168000 59811 77975 72759 53023 101985 68286 87893 96186 75900 95871 FALSE FALSE TRUE 73115.7506 87093.49796 99675.58185 55919.51223 91831.01531 71861.34937 69113.94253 72596.23269 91132.4338 71972.12407 1.015889854 1.210100425 1.384919274 0.776960705 1.275924762 0.998460867 0.960287659 1.008671532 1.266218484 1 16.13515062 -5.239550661 24.99987057 1.045954823 1.204282857 0.178511925 0.15969091 1447.734117 1653505.71 0.04208217 0.072814574 5.76E-06 5.239550661 0.158328034 RLRRY(ph)CVFS(ph)HEELICK ddPTM_HeLa_A485_30min_R1 1 RLRRYCVFSHEELICK 16 3 P41229-5;P41229;P41229-4;P41229-3;P41229-2;E9PFH2;Q9BY66-2;Q9BY66;Q9BY66-3 P41229-5 KDM5C;KDM5D Lysine-specific demethylase 5C;Lysine-specific demethylase 5D 2 0 RLRRY(1)CVFS(1)HEELICK 82.482 0.0023586 378630000 224050 595190 575810 40748 498720 340180 260430 391880 299350 64112 TRUE FALSE FALSE 273889.1495 664792.293 788826.0805 42973.96006 449065.6857 357991.2988 204787.003 295770.8156 359426.7992 48130.05829 5.690604983 13.81241404 16.38946863 0.892871556 9.330254348 7.437998446 4.25486713 6.145241166 7.467823891 1 15.55465055 -5.258633677 24.99816542 5.656480488 12.1489875 0.421842174 3.591503587 244.5456343 2178834.343 0.969663587 1.58846489 5.51E-06 5.258633677 6.49250701 RLS(ph)AEGGDK ddPTM_HeLa_A485_30min_R1 1 RLSAEGGDK 9 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 RLS(1)AEGGDK 54.524 0.025175 327360000 205920 214380 189950 271730 185050 241720 287860 292900 210840 368860 TRUE FALSE FALSE 251726.1936 239449.8761 260220.4095 286573.9218 166625.7723 254376.0854 226356.3594 221065.8158 253153.6541 276909.9904 0.909054214 0.864720972 0.939729221 1.03489918 0.601732614 0.91862372 0.817436594 0.79833095 0.914209176 1 18.07905758 RLS(ph)AGLYR ddPTM_HeLa_A485_30min_R1 3 RLSAGLYR 8 1 B8ZZS2;Q13506-2;Q13506;H0Y4C5 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 RLS(1)AGLYR;RLS(1)AGLYR;RLS(1)AGLYR ;; 153.54 9.97E-05 915920000 176299 275315 294220 212804 325392 264743 325198 326651 244562 278780 TRUE FALSE FALSE 215516.1043 307510.6943 403064.2215 224428.9437 292994.83 278604.5341 255716.7907 246539.3301 293643.3501 209285.2766 1.029771936 1.469337449 1.925908158 1.07235897 1.399978225 1.331218988 1.221857528 1.178006089 1.403076963 1 17.67511129 -8.685854291 0.286099591 0.920007535 1.432262038 0.153556875 0.239518064 8.007250386 1.247406102 1.223166239 0.362264331 2.06E-09 8.685854291 0.512254503 RLS(ph)AGLYR ddPTM_HeLa_A486_30min_R1 2 RLSAGLYR 8 1 B8ZZS2;Q13506-2;Q13506;H0Y4C5 B8ZZS2 NAB1 NGFI-A-binding protein 1 1 0 RLS(1)AGLYR;RLS(1)AGLYR ; 153.54 9.97E-05 449180000 111462 113698 109234 39855 151588 111276 130653 149450 103205 142835 TRUE FALSE FALSE 103649.0894 104688.1564 151532.3302 92784.45416 132574.4195 97547.89849 97962.23749 115423.4975 112150.8925 107068.1863 0.968066173 0.977770896 1.415288102 0.866592191 1.238224202 0.911082011 0.914951872 1.078037291 1.047471676 1 16.70817034 -6.288858672 24.94123515 0.990476123 1.092082055 0.103913509 0.151038357 1824.863108 1659932.385 0.052332846 0.046163772 5.14E-07 6.288858672 0.101605931 RLS(ph)APLPSSCGDPEK ddPTM_HeLa_A485_30min_R1 2 RLSAPLPSSCGDPEK 15 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 0 RLS(0.998)APLPS(0.002)SCGDPEK;RLS(1)APLPSSCGDPEK ; 96.718 0.00046781 325220000 546460 456570 457270 709470 619370 611330 766040 634530 546330 986340 TRUE FALSE FALSE 668018.1417 509961.8899 626433.2016 748226.5496 557703.3481 643338.2935 602369.296 478910.5226 655973.4198 740463.5902 0.902162038 0.688706233 0.846001356 1.010483918 0.753181325 0.868831772 0.813502924 0.646771197 0.885895577 1 19.49806927 -6.974638799 21.95354687 0.805827508 0.841200368 0 0.115574377 316.5105036 273978.435 0.047595775 0.032085714 1.06E-07 6.974638799 0.03537286 RLS(ph)APLPSSCGDPEK ddPTM_HeLa_A486_30min_R1 1 RLSAPLPSSCGDPEK 15 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 0 RLS(1)APLPSSCGDPEK 107.33 0.00011704 0 246060 306820 174960 129820 318180 331440 382280 392650 235470 420780 TRUE FALSE FALSE 228812.4647 282506.4658 242709.1976 302227.5207 278270.8975 290550.3026 286629.5007 303252.1665 255880.7292 315413.9492 0.725435464 0.895668903 0.769494178 0.958193262 0.882240301 0.921171379 0.908740724 0.961441836 0.811253687 1 18.26688694 -2.805217303 0.541673442 0.920900381 9.66E-15 0.435382051 0.063151238 16.62200552 1.082943525 0.030325829 13.65244372 0.001565967 2.805217303 -0.920900381 RLS(ph)AQFENLMAESR ddPTM_HeLa_A485_30min_R1 7 RLSAQFENLMAESR 14 1 Q9H7C4-2;Q9H7C4 Q9H7C4-2 SYNC Syncoilin 1 0 RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR ;;;;;; 236.95 2.05E-35 3524530000 626792 764595 734578 591154 905399 682498 875785 847580 630722 844981 TRUE FALSE FALSE 766219.718 854007.7342 1006328.971 623447.2461 815254.2965 718232.5399 688666.3802 639709.676 757302.1201 634342.7874 1.207895373 1.346287451 1.586411938 0.98282389 1.285195186 1.132246719 1.085637598 1.00846055 1.193837362 1 19.27490313 -5.272798549 24.99957706 1.107339333 1.376807184 0.525030383 0.122639985 578.3805178 1272915.029 0.03438888 0.051515534 5.34E-06 5.272798549 0.269467851 RLS(ph)AQFENLMAESR ddPTM_HeLa_A486_30min_R1 6 RLSAQFENLMAESR 14 1 Q9H7C4-2;Q9H7C4 Q9H7C4-2 SYNC Syncoilin 1 0 RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR ;;;;; 292.66 4.11E-58 3628784000 726102 891206 824340 256398 947758 808493 872594 851691 651363 685702 TRUE FALSE FALSE 675205.9994 820583.5908 1143546.525 596907.5016 828881.3541 708749.3538 654261.7518 657779.5516 707823.6693 513997.756 1.313636084 1.5964731 2.224808399 1.161303711 1.612616679 1.378895813 1.272888343 1.279732341 1.377094863 1 18.97140254 -7.074883918 0.410173189 1.035808786 1.674305963 0.302221922 0.266182998 1.398982716 0.600873259 0.30856093 0.288462153 8.42E-08 7.074883918 0.638497178 RLS(ph)AQGQAISVVGSLSSMSPLEEEAPQAK ddPTM_HeLa_A485_30min_R1 1 RLSAQGQAISVVGSLSSMSPLEEEAPQAK 29 1 Q92797;M0R3C7;A0A087WUE9;Q92797-2 Q92797 SYMPK Symplekin 1 0 RLS(0.613)AQGQAIS(0.123)VVGS(0.247)LS(0.007)S(0.008)MS(0.001)PLEEEAPQAK 90.879 0.00092316 113190000 25519 38092 32621 44642 48171 40604 50894 52194 33852 54163 TRUE FALSE FALSE 31195.61351 42546.52804 44688.86537 47080.67942 43374.9261 42729.96265 40020.08113 39393.33966 40645.78589 40661.1609 0.767209121 1.046367765 1.099055324 1.157878388 1.066740967 1.050879063 0.984233609 0.968819847 0.999621875 1 15.31136378 -9.768894869 13.79189781 0.999982967 1.023423319 0 0.098835544 0 0 0.099166297 0.02405136 1.70E-10 9.768894869 0.023440352 RLS(ph)ASSTGSTR ddPTM_HeLa_A485_30min_R1 5 RLSASSTGSTR 11 1 A0A2R8Y5E4;A0A2R8YFK2;A0A2R8Y6M6;A0A2R8Y4C2;A0A2R8YFS8;A0A2R8Y8C4;A0A2R8Y5C9;A0A2R8Y596;P56945-4;P56945-5;P56945-8;P56945;P56945-7;P56945-3;P56945-2;P56945-6 A0A2R8Y5E4 BCAR1 Breast cancer anti-estrogen resistance protein 1 1 0 RLS(0.999)ASSTGSTR;RLS(0.85)AS(0.012)S(0.134)T(0.004)GSTR;RLS(0.912)AS(0.038)S(0.046)T(0.004)GSTR;RLS(0.979)AS(0.011)S(0.009)T(0.001)GSTR;RLS(0.949)AS(0.014)S(0.036)T(0.001)GSTR ;;;; 195.94 3.27E-11 1715100000 701091 1015984 1020492 702799 1140745 952426 1079766 1263068 920670 953455 TRUE FALSE FALSE 857046.2742 1134794.491 1398014.457 741191.1298 1027168.422 1002293.553 849065.1732 953298.5926 1105440.024 715776.2155 1.197366238 1.585404022 1.95314461 1.035506788 1.435041288 1.400288988 1.186215964 1.331838879 1.544393345 1 19.44914908 -5.275979615 24.99918021 1.298051722 1.579314912 0.25655213 0.233877513 1135.504837 1952282.803 0.065274783 0.097300546 5.30E-06 5.275979615 0.28126319 RLS(ph)ASSTGSTR ddPTM_HeLa_A486_30min_R1 5 RLSASSTGSTR 11 1 A0A2R8Y5E4;A0A2R8YFK2;A0A2R8Y6M6;A0A2R8Y4C2;A0A2R8YFS8;A0A2R8Y8C4;A0A2R8Y5C9;A0A2R8Y596;P56945-4;P56945-5;P56945-8;P56945;P56945-7;P56945-3;P56945-2;P56945-6 A0A2R8Y5E4 BCAR1 Breast cancer anti-estrogen resistance protein 1 1 0 RLS(0.782)AS(0.025)S(0.025)T(0.025)GS(0.048)T(0.095)R;RLS(1)ASSTGSTR;RLS(1)ASSTGSTR;RLS(0.86)AS(0.039)S(0.02)T(0.02)GS(0.051)T(0.01)R;RLS(0.685)AS(0.045)S(0.045)T(0.045)GS(0.021)T(0.159)R ;;;; 120.59 0.00034055 1844430000 607661 621574 604029 209074 751620 542109 626750 638651 545582 582069 TRUE FALSE FALSE 565067.1019 572318.2125 837925.2053 486734.838 657344.811 475229.1033 469930.5209 493244.109 592873.487 436315.1338 1.295089393 1.311708369 1.920458724 1.115558 1.506582651 1.08918776 1.077043826 1.130476738 1.358819443 1 18.73501099 -6.264591438 24.8938308 1.135881483 1.433106476 0.330677089 0.212454873 325.5824028 2571322.19 0.072630177 0.066778573 5.44E-07 6.264591438 0.297224993 RLS(ph)DEHEPEQR ddPTM_HeLa_A485_30min_R1 3 RLSDEHEPEQR 11 1 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 RLS(1)DEHEPEQR;RLS(1)DEHEPEQR;RLS(1)DEHEPEQR ;; 160.04 4.60E-08 7459930000 1482260 2228020 2251540 1681010 2562220 2088580 2230860 2337370 1902760 2234080 TRUE FALSE FALSE 1811983.623 2488567.558 3084478.34 1772839.32 2307116.38 2197934.819 1754218.537 1764126.343 2284626.479 1677164.971 1.080384848 1.483794141 1.839102529 1.057045282 1.375604917 1.310506037 1.045942747 1.051850219 1.362195442 1 20.67759317 -6.209727919 1.108985382 1.122970631 1.422133389 0.203395526 0.22614559 0.782803808 2.010314106 0.119891225 0.113598802 6.17E-07 6.209727919 0.299162758 RLS(ph)DEHEPEQR ddPTM_HeLa_A486_30min_R1 4 RLSDEHEPEQR 11 1 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 RLS(1)DEHEPEQR;RLS(1)DEHEPEQR;RLS(1)DEHEPEQR;RLS(1)DEHEPEQR ;;; 137.21 1.00E-05 7530890000 2876500 3453530 3134530 1185089 4092880 2857180 3437770 3561940 2657810 2932520 TRUE FALSE FALSE 2674872.204 3179859.705 4348303.962 2758947.083 3579512.826 2504690.181 2577603.585 2750964.019 2888191.111 2198197.904 1.216847764 1.446575715 1.978122148 1.255094947 1.628385151 1.139428882 1.172598509 1.251463307 1.313890394 1 21.06788985 -6.268375818 24.58370462 1.191012804 1.514159445 0.376633698 0.211334851 501.1255213 1776053.379 0.0737427 0.066492462 5.39E-07 6.268375818 0.323146641 RLS(ph)DKGLK ddPTM_HeLa_A485_30min_R1 2 RLSDKGLK 8 2 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 RLS(1)DKGLK;RLS(1)DKGLK ; 86.313 0.0032509 1896250000 499870 1172040 621720 437420 2338700 2676200 4451000 11706200 895430 830160 TRUE FALSE FALSE 611064.357 1309099.883 851720.0999 461315.147 2105850.816 2816321.694 3500007.489 8835236.095 1075134.588 623216.39 0.980501102 2.100554324 1.366652279 0.740216648 3.379004227 4.519010955 5.616038899 14.17683527 1.725138499 1 19.24937365 -6.301134157 1.780590599 6.625825169 1.406056436 0.222576071 3.407614706 0.436027936 2.728619441 1.404954333 1.246737087 5.00E-07 6.301134157 -5.219768733 RLS(ph)DPLLPSPEDETGSLVHLEDPER ddPTM_HeLa_A485_30min_R1 3 RLSDPLLPSPEDETGSLVHLEDPER 25 1 Q8WYL5-4;Q8WYL5;Q8WYL5-2;Q8WYL5-5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 RLS(0.95)DPLLPS(0.049)PEDET(0.001)GS(0.001)LVHLEDPER;RLS(0.998)DPLLPS(0.002)PEDETGSLVHLEDPER;RLS(0.946)DPLLPS(0.054)PEDETGSLVHLEDPER ;; 140.38 4.13E-07 185421000 46261.7 64633.4 62513.7 40486.7 59495.6 54252.1 56716.3 57139.8 52749.1 55812.8 TRUE FALSE FALSE 56552.45556 72191.71389 85640.11904 42698.3859 53572.00916 57092.65607 44598.39918 43126.17446 63335.36053 41899.69612 1.349710399 1.722965095 2.043931746 1.019061947 1.278577511 1.362603106 1.064408655 1.029271772 1.511594746 1 15.35465216 -5.273038592 24.99512782 1.188808921 1.707278695 0.541475848 0.221196849 547.9215188 1180714.307 0.062057724 0.092927327 5.33E-06 5.273038592 0.518469774 RLS(ph)DPLLPSPEDETGSLVHLEDPER ddPTM_HeLa_A486_30min_R1 2 RLSDPLLPSPEDETGSLVHLEDPER 25 1 Q8WYL5-4;Q8WYL5;Q8WYL5-2;Q8WYL5-5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 RLS(0.92)DPLLPS(0.08)PEDETGSLVHLEDPER;RLS(1)DPLLPSPEDETGSLVHLEDPER ; 102.01 0.00081659 164261000 80413 80855 75438 16381 81372 63077 62796 76355 68393 69923 TRUE FALSE FALSE 74776.46395 74447.75533 104649.6139 38135.79585 71165.565 55295.20106 47083.77661 58970.63332 74321.36031 52413.82568 1.426655334 1.420383923 1.996603235 0.72759039 1.357763225 1.054973575 0.898308338 1.12509691 1.41797244 1 15.67765979 -5.264074865 24.99999126 1.090885703 1.595131129 0.505753636 0.240437087 195.0640313 1850365.664 0.065934807 0.103065368 5.44E-06 5.264074865 0.504245427 RLS(ph)ELGITQADDNLMSQEMFVGIVGNQFK ddPTM_HeLa_A485_30min_R1 2 RLSELGITQADDNLMSQEMFVGIVGNQFK 29 1 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 RLS(0.999)ELGIT(0.001)QADDNLMSQEMFVGIVGNQFK;RLS(1)ELGITQADDNLMSQEMFVGIVGNQFK ; 323.74 1.10E-109 250080000 164240 149076 152063 185572 244461 173523 235069 262800 176204 277383 TRUE FALSE FALSE 200774.6214 166509.1414 208317.4316 195709.3285 220121.6045 182608.396 184844.5878 198347.8879 211566.5266 208236.523 0.964166221 0.799615452 1.000388542 0.939841511 1.057074913 0.8769278 0.887666511 0.952512485 1.015991448 1 17.6678636 -1 0.050293031 1.112026413 0.636787468 0.094429146 0.069282689 1260.731978 4.795637777 10.63261793 46.43991069 0.1 1 -0.475238944 RLS(ph)ELGITQADDNLMSQEMFVGIVGNQFK ddPTM_HeLa_A486_30min_R1 2 RLSELGITQADDNLMSQEMFVGIVGNQFK 29 1 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 RLS(0.961)ELGIT(0.037)QADDNLMS(0.002)QEMFVGIVGNQFK;RLS(0.999)ELGIT(0.001)QADDNLMSQEMFVGIVGNQFK ; 273.71 2.54E-77 269520000 76226 80492 66963.8 47773.8 94414 99441 113767 101891 71237 104119 TRUE FALSE FALSE 70882.95103 74113.52077 92893.97671 111219.8208 82571.71574 87172.98046 85301.2933 78692.64356 77411.88052 78046.9247 0.908209405 0.949602064 1.190232377 1.425037837 1.057975264 1.11693037 1.092948808 1.00827347 0.991863303 1 16.25205417 -7.22239272 2.628544125 0.994811103 1.116625367 0.117433169 0.13242586 0.696325371 9.37454692 0.090718455 0.041897929 5.99E-08 7.22239272 0.121814264 RLS(ph)EQLAHTPTAFK ddPTM_HeLa_A486_30min_R1 2 RLSEQLAHTPTAFK 14 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;F8W860;Q9UBF8-3 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 RLS(0.998)EQLAHT(0.002)PTAFK;RLS(0.895)EQLAHT(0.102)PT(0.003)AFK ; 125.23 1.71E-05 611120000 409490 503070 396710 195574 611510 574800 576730 583300 444250 604010 TRUE FALSE FALSE 380786.8656 463204.9011 550326.7363 455306.1558 534808.7137 503887.0201 432426.054 450495.3233 482757.9477 452761.9646 0.841031039 1.02306496 1.215488003 1.005619269 1.181213873 1.112918177 0.955084764 0.994993746 1.066251111 1 18.78839324 -9.840425503 13.09039252 0.999993278 1.049275812 0.01367324 0.103513255 0 0 0.102522129 0.024865269 1.44E-10 9.840425503 0.049282535 RLS(ph)ESQLSFR ddPTM_HeLa_A485_30min_R1 5 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 RLS(1)ESQLSFR;RLS(1)ESQLSFR;RLS(0.717)ES(0.277)QLS(0.006)FR;RLS(1)ESQLSFR;RLS(0.676)ES(0.318)QLS(0.006)FR ;;;; 228.38 1.36E-29 1598850000 834779 1050071 1135187 752652 1146492 978702 959951 1089889 923138 902981 TRUE FALSE FALSE 1020472.709 1172867.669 1555139.91 793767.4729 1032343.231 1029945.323 754849.6268 822592.0139 1108403.329 677884.4548 1.505378537 1.730188177 2.294107645 1.170948039 1.522889666 1.519352326 1.113537302 1.213469358 1.635091823 1 19.37067986 -5.285785451 24.99576056 1.328963077 1.831921246 0.461674598 0.26288765 695.7010162 714264.6755 0.073989965 0.109803872 5.18E-06 5.285785451 0.50295817 RLS(ph)ESQLSFR ddPTM_HeLa_A486_30min_R1 2 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 RLS(1)ESQLSFR;RLS(0.944)ES(0.056)QLSFR ; 191.84 2.89E-10 1312060000 877180 1016510 964470 293607 1296840 852500 964970 1021580 868820 936020 TRUE FALSE FALSE 815694.2118 935958.0455 1337938.613 683531.9341 1134178.235 747327.2176 723524.2996 788988.5349 944130.0171 701634.4995 1.162562862 1.333968108 1.906888293 0.974199437 1.616480141 1.065123249 1.031198295 1.12450077 1.345615157 1 19.42036016 -6.284822596 24.83286975 1.115938192 1.399852927 0.246812673 0.249373221 1094.454076 1162301.221 0.086061673 0.075948096 5.19E-07 6.284822596 0.283914735 RLS(ph)ESSALK ddPTM_HeLa_A485_30min_R1 2 RLSESSALK 9 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RLS(0.915)ES(0.081)S(0.004)ALK;RLS(0.991)ES(0.009)SALK ; 124.51 0.00017928 231720000 988110 754840 796370 1423280 1036110 785220 987030 762930 811450 1508010 TRUE FALSE FALSE 1207911.661 843111.9718 1090980.403 1501030.182 932951.2504 826332.905 776142.9772 575820.2213 974300.5719 1132090.86 1.06697413 0.744738785 0.963686256 1.325891972 0.824095736 0.729917478 0.685583644 0.508634282 0.860620474 1 20.11055832 -5.988530312 24.9821617 0.727916561 1.010142917 0.331700887 0.178057673 250.2549609 545077.5641 0.056109611 0.063572162 1.03E-06 5.988530312 0.282226356 RLS(ph)ESSALK ddPTM_HeLa_A486_30min_R1 3 RLSESSALK 9 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RLS(0.545)ES(0.344)S(0.111)ALK;RLS(0.922)ES(0.078)SALK;RLS(0.969)ES(0.029)S(0.003)ALK ;; 169.09 4.21E-06 897670000 1482060 1759250 1178380 568864 1537050 1801440 1851490 1710690 1495160 1881300 TRUE FALSE FALSE 1378175.247 1619840.623 1634680.294 1324344.141 1344258.857 1579196.648 1388227.619 1321203.231 1624761.673 1410210.235 0.977283538 1.14865187 1.15917489 0.93911114 0.953232946 1.119830653 0.984411817 0.936883876 1.152141456 1 20.42747883 -5.256547734 24.99981159 1.010466457 1.100398273 0.174639671 0.082184379 683.560237 3493469.918 0.022380533 0.037144031 5.54E-06 5.256547734 0.089931816 RLS(ph)FAVPFR ddPTM_HeLa_A485_30min_R1 1 RLSFAVPFR 9 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 RLS(1)FAVPFR 128.68 0.00015289 57463000 25298 31135 30003 39854 35063 25362 34819 39166 26187 43789 TRUE FALSE FALSE 30925.45282 34775.96741 41102.35823 42031.1231 31572.00461 26689.9151 27379.6362 29560.47709 31442.4907 32873.20818 0.940749459 1.057881763 1.250329995 1.278582938 0.960417506 0.811904788 0.832886041 0.899227022 0.956477705 1 15.00462464 -5.948078858 7.570647652 0.889142718 1.134310886 0.537222187 0.101824696 0.183095796 22.6051945 0.034165381 0.038714163 1.13E-06 5.948078858 0.245168169 RLS(ph)FLVSYIASK ddPTM_HeLa_A485_30min_R1 1 RLSFLVSYIASK 12 1 A0A1B0GVU9;P47897;A0A0U1RQM8;A0A0U1RQU2;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165;A0A0U1RQT0 A0A1B0GVU9 QARS Glutamine--tRNA ligase 1 0 RLS(0.998)FLVS(0.002)YIASK 90.926 0.0012204 10750000 30644 33717 27991 35143 45951 35361 40556 49783 27960 48931 TRUE FALSE FALSE 37460.65208 37659.90985 38346.0357 37062.7731 41375.9571 37212.44728 31890.87929 37573.64119 33571.31554 36733.40221 1.019798054 1.025222484 1.043901011 1.008966523 1.126385105 1.01304113 0.86817113 1.022873977 0.913917947 1 15.1648049 -6.534570618 24.99242464 0.951355365 1.044516793 0.441415662 0.049751681 203.205248 434365.4641 0.018010875 0.013962509 2.92E-07 6.534570618 0.093161428 RLS(ph)FLVSYIASK ddPTM_HeLa_A486_30min_R1 2 RLSFLVSYIASK 12 1 A0A1B0GVU9;P47897;A0A0U1RQM8;A0A0U1RQU2;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165;A0A0U1RQT0 A0A1B0GVU9 QARS Glutamine--tRNA ligase 1 0 RLS(0.999)FLVSYIASK;RLS(0.997)FLVS(0.003)YIASK ; 94.544 0.00098687 27474000 93601 95344 77042 48503 105290 97940 117271 112058 84261 111223 TRUE FALSE FALSE 87040.05326 87788.5942 106874.7257 112917.4352 92083.54641 85857.15858 87928.55543 86544.83961 91564.81132 83372.03686 1.043995763 1.052974085 1.281901339 1.354380191 1.104489585 1.029807617 1.05465284 1.038055958 1.098267654 1 16.34727596 -5.992959975 24.99954603 1.049408773 1.187093713 0.346463747 0.089892913 224.0542081 795622.9452 0.030904485 0.034971999 1.02E-06 5.992959975 0.13768494 RLS(ph)GEER ddPTM_HeLa_A485_30min_R1 4 RLSGEER 7 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 RLS(1)GEER;RLS(1)GEER;RLS(1)GEER;RLS(1)GEER ;;; 148.91 0.00059162 1529960000 367937 541938 419889 359051 369674 469019 487989 617510 448571 484857 TRUE FALSE FALSE 449783.3163 605312.9349 575223.4141 378665.047 332867.9586 493576.1096 383726.1636 466064.7043 538595.0852 363991.073 1.235698756 1.662988407 1.580322862 1.040314104 0.914494841 1.356011579 1.054218612 1.280428941 1.479693116 1 18.47354354 -5.255808934 24.97091099 1.165859896 1.510001864 0.383961997 0.192428323 475.433736 2108533.077 0.053481944 0.089424616 5.55E-06 5.255808934 0.344141968 RLS(ph)GEER ddPTM_HeLa_A486_30min_R1 3 RLSGEER 7 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 RLS(1)GEER;RLS(1)GEER;RLS(1)GEER ;; 125.7 0.0010276 1710650000 664756 517696 693656 261416 537171 828110 617100 545198 777658 710603 TRUE FALSE FALSE 618160.0372 476671.8835 962258.18 608589.6592 469794.0043 725946.2078 462695.053 421068.317 845066.0216 532663.3836 1.160507848 0.894883895 1.806503337 1.14254082 0.881971652 1.362861106 0.868644377 0.790496081 1.586491671 1 19.02286458 -5.511198924 24.78970807 1.068995827 1.285801075 0.080764471 0.308422682 1282.456865 2721938.225 0.087900556 0.122494435 3.08E-06 5.511198924 0.216805248 RLS(ph)GGS(ph)HSYGGESPRLS(ph)PCSSIGK ddPTM_HeLa_A485_30min_R1 1 RLSGGSHSYGGESPRLSPCSSIGK 24 2 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 3 0 RLS(0.835)GGS(0.542)HS(0.466)Y(0.049)GGES(0.108)PRLS(0.995)PCS(0.004)S(0.001)IGK 100.36 0.0010622 158320000 136250 165820 142160 176960 217060 185350 248800 276230 184530 276480 TRUE FALSE FALSE 166558.3424 185211.2066 194750.8998 186626.8767 195448.7443 195054.6394 195641.8475 208484.1594 221563.4784 207558.6242 0.80246409 0.892332021 0.93829346 0.8991526 0.941655616 0.939756852 0.942585972 1.004459151 1.06747421 1 17.66315935 -1.031267909 0.206010996 1.035571337 1.14E-09 0.762061148 0.033368011 26.56102453 0.330280755 0.062182109 8.939280215 0.093053367 1.031267909 -1.035571335 RLS(ph)GGSHSYGGESPR ddPTM_HeLa_A485_30min_R1 2 RLSGGSHSYGGESPR 15 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 RLS(0.737)GGS(0.263)HSYGGESPR;RLS(0.822)GGS(0.176)HS(0.002)YGGESPR ; 148.69 3.67E-08 1073410000 234950 348180 337400 220812 374070 341580 402940 408520 334560 361810 TRUE FALSE FALSE 287213.8169 388896.6222 462218.3004 232874.4004 336826.2774 359464.6006 316848.5773 308329.8295 401703.1232 271617.4256 1.057420437 1.431780827 1.701725504 0.857361783 1.240076098 1.323422456 1.16652522 1.135162182 1.478929867 1 18.05121651 -10.97140117 2.865968108 0.780020803 1.265684329 0.11201334 0.224533471 33900427.02 33562394.48 48817613.01 0.056901776 1.07E-11 10.97140117 0.485663526 RLS(ph)GGSHSYGGESPR ddPTM_HeLa_A486_30min_R1 3 RLSGGSHSYGGESPR 15 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 RLS(0.981)GGS(0.019)HSYGGESPR;RLS(0.957)GGS(0.043)HSYGGESPR;RLS(0.834)GGS(0.166)HSYGGESPR ;; 141.3 1.84E-07 1548320000 616718 566954 504769 97165 647481 491989 489744 552276 495091 459017 TRUE FALSE FALSE 573489.2529 522026.5002 700229.075 226205.0304 566267.8955 431292.3994 367204.8712 426534.8109 538005.8865 344076.1555 1.666750932 1.517183019 2.035099102 0.65742722 1.64576326 1.253479477 1.067219757 1.239652339 1.563624442 1 18.39236839 -5.241472614 24.99688148 1.228650539 1.717428175 0.416890958 0.288989024 854.9489329 1070330.056 0.075211255 0.130053698 5.73E-06 5.241472614 0.488777637 RLS(ph)GNEYVFTK ddPTM_HeLa_A485_30min_R1 2 RLSGNEYVFTK 11 1 A0A2R8Y4E6;O95263-2;O95263-3;O95263-6;O95263-4;O95263 A0A2R8Y4E6 PDE8B "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B" 1 0 RLS(1)GNEYVFTK;RLS(1)GNEYVFTK ; 115.38 0.00021011 1228060000 1325390 1713950 1494560 1518840 2174880 1840360 2101580 2476200 1704050 2080020 TRUE FALSE FALSE 1620218.433 1914381.543 2047459.938 1601810.383 1958341.311 1936718.404 1652560.265 1868908.067 2046037.205 1561509.294 1.037597688 1.225981523 1.311205733 1.025809061 1.254133625 1.240286184 1.058309593 1.196860035 1.310294606 1 20.57450973 -10.30433053 4.536135022 0.999870645 1.185118232 0.226843515 0.1021781 0.000130122 2.00E-05 0.096305282 0.023341194 4.96E-11 10.30433053 0.185247587 RLS(ph)GNEYVFTK ddPTM_HeLa_A486_30min_R1 3 RLSGNEYVFTK 11 1 A0A2R8Y4E6;O95263-2;O95263-3;O95263-6;O95263-4;O95263 A0A2R8Y4E6 PDE8B "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B" 1 0 RLS(1)GNEYVFTK;RLS(1)GNEYVFTK;RLS(1)GNEYVFTK ;; 142.57 6.44E-07 1309520000 2027260 2283400 1687880 724040 2474500 2043800 2376300 2503500 1782660 2199900 TRUE FALSE FALSE 1885159.543 2102455.068 2341472.339 1685601.711 2164125.136 1791656.736 1781724.606 1933507.701 1937182.404 1649030.721 1.143192494 1.27496416 1.419908258 1.022177264 1.312361928 1.086490817 1.080467807 1.172511631 1.174740033 1 20.65318685 -5.905468859 1.119707884 1.114415235 1.257384713 0.219635391 0.111813306 0.785761334 2.096845146 0.050143773 0.064109378 1.24E-06 5.905468859 0.142969478 RLS(ph)GNEYVLSTK ddPTM_HeLa_A485_30min_R1 1 RLSGNEYVLSTK 12 1 O60658-6;O60658-2;O60658 O60658-6 PDE8A "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8A" 1 0 RLS(0.995)GNEY(0.005)VLSTK 66.673 0.009082 393200000 320590 411830 284780 567200 375850 398200 449370 457500 332440 656670 TRUE FALSE FALSE 391904.1395 459989.9361 390131.9727 598184.6998 338429.0543 419049.1363 353358.4285 345297.4077 399157.6587 492974.2541 0.794978919 0.933091195 0.791384072 1.213419757 0.686504521 0.85004264 0.716788809 0.700437 0.809692708 1 18.91115278 RLS(ph)GS(ph)S(ph)EDEEDSGKGEPTAK ddPTM_HeLa_A485_30min_R1 2 RLSGSSEDEEDSGKGEPTAK 20 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 3 0 RLS(1)GS(0.999)S(0.995)EDEEDS(0.007)GKGEPTAK;RLS(1)GS(0.997)S(0.873)EDEEDS(0.13)GKGEPTAK ; 97.059 0.00034426 1203950000 799590 620180 410430 1641250 1070000 1062510 1692900 1684630 737750 2344230 TRUE FALSE FALSE 977456.0369 692704.6562 562265.1364 1730907.332 963467.043 1118141.381 1331198.085 1271471.851 885809.658 1759856.603 0.555418001 0.393614261 0.319494858 0.98355021 0.547469061 0.635359369 0.756424178 0.722486053 0.503341952 1 20.74702645 -14 0.058700353 2.389575992 9.46E-13 0.346866329 0.174421501 490.7301501 2.103314458 100.1501226 17.30716556 1.00E-14 14 -2.389575992 RLS(ph)GS(ph)S(ph)EDEEDSGKGEPTAK ddPTM_HeLa_A486_30min_R1 2 RLSGSSEDEEDSGKGEPTAK 20 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 3 0 RLS(1)GS(0.999)S(0.999)EDEEDS(0.002)GKGEPTAK;RLS(1)GS(0.999)S(0.997)EDEEDS(0.003)GKGEPTAK ; 106.63 3.64E-05 1238500000 776010 710530 322310 593850 686060 1025770 1246500 1132680 575560 1538440 TRUE FALSE FALSE 721615.7063 654225.0151 447117.0638 1382512.812 600007.9575 899220.9267 934612.5159 874793.4902 625450.0042 1153204.61 0.625748197 0.56731044 0.387717028 1.198844333 0.520296183 0.779758352 0.810448126 0.75857613 0.542358224 1 20.13721708 -14 0.040262564 2.158961185 3.21E-10 0.15342156 0.212813404 1681.13525 5.04340996 244.5514565 72.83335513 1.00E-14 14 -2.158961184 RLS(ph)GSSLCSGSWVSADGFLR ddPTM_HeLa_A485_30min_R1 1 RLSGSSLCSGSWVSADGFLR 20 1 O75400-3;O75400;F5H578;H0YG38 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 RLS(0.616)GS(0.228)S(0.155)LCS(0.001)GSWVSADGFLR 73.839 0.0023229 208460000 56201 60778 58655 86464 88006 77669 104720 114600 69726 117140 TRUE FALSE FALSE 68702.71856 67885.4584 80353.92534 91187.30938 79243.81363 81735.62874 82345.71652 86494.17031 83719.36864 87939.1538 0.781252896 0.771959423 0.913744582 1.036936398 0.901120948 0.929456621 0.936394233 0.983568372 0.952014717 1 16.42421803 -4.837753002 4.086427483 0.958114568 0.774765027 0.797848207 0.036817881 0.085417455 2.708429882 0.009753453 0.022900383 1.45E-05 4.837753002 -0.183349541 RLS(ph)GVSSVDSAFSSR ddPTM_HeLa_A485_30min_R1 2 RLSGVSSVDSAFSSR 15 1 P57078-2;P57078 P57078-2 RIPK4 Receptor-interacting serine/threonine-protein kinase 4 1 0 RLS(0.999)GVS(0.001)SVDSAFSSR;RLS(0.955)GVS(0.034)S(0.012)VDSAFSSR ; 106.42 0.0001738 367430000 83812 86759 96994 82131 91780 80427 110210 100296 71183 103270 TRUE FALSE FALSE 102455.6903 96904.71035 132876.1169 86617.60856 82642.06094 84638.03336 86662.73317 75698.24874 85468.77517 77526.68954 1.321553788 1.249952899 1.713940291 1.117261798 1.065982069 1.091727686 1.117843851 0.976415338 1.102443245 1 16.24240544 -5.489170983 22.29028247 1.065112087 1.411458462 0.658965376 0.119437118 102.9246489 68061.52191 0.032934794 0.048789622 3.24E-06 5.489170983 0.346346375 RLS(ph)GVSSVDSAFSSR ddPTM_HeLa_A486_30min_R1 1 RLSGVSSVDSAFSSR 15 1 P57078-2;P57078 P57078-2 RIPK4 Receptor-interacting serine/threonine-protein kinase 4 1 0 RLS(1)GVSSVDSAFSSR 148.01 3.89E-08 114880000 47999 57713 50616 19783 61773 51707 60588 58812 45237 58844 TRUE FALSE FALSE 44634.51797 53139.61169 70215.87074 46055.82378 54024.85433 45327.91606 45428.24157 45421.79146 49158.17958 44109.07939 1.011912254 1.204731825 1.591868879 1.044134777 1.224801222 1.027632331 1.029906817 1.029760586 1.114468501 1 15.42878803 -6.006845741 1.683474058 1.041201585 1.247886187 0.242713768 0.149935046 0.525529031 3.018903236 0.059501551 0.065500102 9.84E-07 6.006845741 0.206684602 RLS(ph)HPGHFWK ddPTM_HeLa_A485_30min_R1 2 RLSHPGHFWK 10 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QSG8;J3QQL4;E9PB13;Q6VAB6 A0A2R8Y4X0 KSR1;KSR2 Kinase suppressor of Ras 1;Kinase suppressor of Ras 2 1 0 RLS(1)HPGHFWK;RLS(1)HPGHFWK ; 122.97 0.0001075 1015060000 760360 938810 823160 720120 682990 785060 742660 928130 554350 900650 TRUE FALSE FALSE 929499.4588 1048595.663 1127681.139 759458.3322 614989.1175 826164.5277 583984.624 700504.6622 665602.9602 676134.5302 1.374725616 1.550868379 1.66783545 1.123235537 0.909566203 1.221893707 0.863710694 1.036043318 0.984423854 1 19.3669508 -5.386779607 4.730675704 1.009282424 1.530343644 0.818483652 0.111304474 0.087133724 2.97199754 0.031068344 0.046798807 4.10E-06 5.386779607 0.52106122 RLS(ph)HPGHFWK ddPTM_HeLa_A486_30min_R1 1 RLSHPGHFWK 10 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QSG8;J3QQL4;E9PB13;Q6VAB6 A0A2R8Y4X0 KSR1;KSR2 Kinase suppressor of Ras 1;Kinase suppressor of Ras 2 1 0 RLS(1)HPGHFWK 59.607 0.025518 319220000 180260 133300 109300 63065 161800 139820 120860 156800 125380 185370 TRUE FALSE FALSE 167624.7049 122736.8225 151623.8872 146818.5071 141505.5353 122570.43 90619.54967 121100.0629 136248.0394 138952.1454 1.206348447 0.883302824 1.091195006 1.05661202 1.018376037 0.882105343 0.652163732 0.87152352 0.980539299 1 17.08422858 -6.253582133 4.046779029 0.85320805 1.046795357 0.356640758 0.115409068 0.233963601 9.157361997 0.040472989 0.038109902 5.58E-07 6.253582133 0.193587307 RLS(ph)IIGPTSR ddPTM_HeLa_A485_30min_R1 5 RLSIIGPTSR 10 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR ;;;; 180.85 9.13E-10 2331140000 710293 853463 910064 714760 1095291 757009 941176 1001991 811624 931417 TRUE FALSE FALSE 868295.2274 953268.0737 1246734.545 753805.5289 986239.9822 796644.8207 740086.0589 756251.1362 974509.4921 699231.8834 1.241784375 1.363307504 1.783005859 1.078047994 1.410461974 1.13931421 1.058427221 1.081545556 1.393685722 1 19.41541144 -5.891173427 1.395420119 1.138150163 1.424243986 0.269692493 0.193472341 0.556519467 2.256089201 0.077401135 0.095786892 1.28E-06 5.891173427 0.286093823 RLS(ph)IIGPTSR ddPTM_HeLa_A486_30min_R1 6 RLSIIGPTSR 10 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR;RLS(1)IIGPTSR ;;;;; 177.93 5.51E-10 2364210000 935911 1109890 952299 389976 1176666 970609 1110902 1180648 840452 1021248 TRUE FALSE FALSE 870308.4719 1021938.274 1321054.676 907883.8363 1029077.578 850865.13 832942.5697 911840.2238 913303.0561 765520.8536 1.136884081 1.334958113 1.725693912 1.185968785 1.344284187 1.11148524 1.088072997 1.191137014 1.193047912 1 19.54608215 -6.061319967 1.836016521 1.125347885 1.378336901 0.337365216 0.156654728 0.422844443 2.85198955 0.061683714 0.06500792 8.68E-07 6.061319967 0.252989016 RLS(ph)ITSLTGK ddPTM_HeLa_A485_30min_R1 2 RLSITSLTGK 10 1 G3V1S3;Q6ZUT9;Q6ZUT9-2 G3V1S3 DENND5B DENN domain-containing protein 5B 1 0 RLS(0.999)IT(0.001)SLTGK;RLS(0.998)IT(0.002)SLTGK ; 134.91 2.94E-05 1047630000 1720790 1638900 1551800 1865620 2307900 2111000 2817500 3062400 1892150 2681600 TRUE FALSE FALSE 2103573.799 1830555.098 2125875.396 1967534.097 2078117.372 2221528.696 2215518.108 2311341.598 2271887.149 2013126.471 1.044928786 0.909309537 1.056006876 0.977352454 1.032283566 1.103521675 1.100535977 1.148135317 1.128536722 1 20.94100638 -6.133960202 2.767148152 1.106772466 0.994826841 0.438394243 0.052546029 0.229203733 3.399575556 0.017836651 0.017920478 7.35E-07 6.133960202 -0.111945624 RLS(ph)ITSLTGK ddPTM_HeLa_A486_30min_R1 2 RLSITSLTGK 10 1 G3V1S3;Q6ZUT9;Q6ZUT9-2 G3V1S3 DENND5B DENN domain-containing protein 5B 1 0 RLS(1)ITSLTGK;RLS(0.999)IT(0.001)SLTGK ; 169.79 1.71E-07 1194680000 1888270 1898800 1278960 654830 1928680 2017980 2296300 2552500 1525770 2283500 TRUE FALSE FALSE 1755912.024 1748332.173 1774207.564 1524477.333 1686766.97 1769022.145 1721741.452 1971351.471 1658024.972 1711696.737 1.025831262 1.021402994 1.036519803 0.890623497 0.98543564 1.0334904 1.00586828 1.151694356 0.968644116 1 20.70699569 -6.501628082 2.523258989 1.044203634 0.991202013 0.084915308 0.0592448 0.609666802 7.773357036 0.024836868 0.019720192 3.15E-07 6.501628082 -0.053001621 RLS(ph)LESEGAGEGAAASPELSALEEAFRR ddPTM_HeLa_A485_30min_R1 1 RLSLESEGAGEGAAASPELSALEEAFRR 28 2 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 RLS(1)LESEGAGEGAAASPELSALEEAFRR 144.44 2.16E-09 60901000 7829 10899 8591.9 6532.8 13274 15657 15644 15592 11521 8024.6 TRUE FALSE FALSE 9570.53404 12173.54324 11770.40135 6889.670322 11952.39395 16476.77631 12301.5316 11768.03755 13833.15902 6024.214902 1.588677396 2.020768422 1.953848184 1.143662773 1.984058362 2.735091058 2.042014072 1.953455802 2.296259222 1 12.55655752 -5.984472559 24.98523824 2.099726746 1.701450485 0.087244442 0.4653978 475.7501001 765526.3458 0.139820572 0.158495258 1.04E-06 5.984472559 -0.398276261 RLS(ph)LESEGAGEGAAASPELSALEEAFRR ddPTM_HeLa_A486_30min_R1 2 RLSLESEGAGEGAAASPELSALEEAFRR 28 2 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 RLS(0.999)LES(0.001)EGAGEGAAASPELSALEEAFRR;RLS(0.999)LES(0.001)EGAGEGAAASPELSALEEAFRR ; 195.66 1.13E-21 87574000 16980.3 19459.4 17227.4 6772.3 19373.1 17016.4 17780.3 14913.1 15311.4 17419.3 TRUE FALSE FALSE 15790.06866 17917.36627 23898.31065 15766.25665 16943.14515 14917.08958 13331.48088 11517.71268 16638.60448 13057.3939 1.209281789 1.372200794 1.830251184 1.207458148 1.297590107 1.142424721 1.020990941 0.882083574 1.274266872 1 13.67257936 -6.057126336 1.463592647 1.039052068 1.445362944 0.452299258 0.183215109 0.364092686 1.587997314 0.07799548 0.08320702 8.77E-07 6.057126336 0.406310876 RLS(ph)LGAQK ddPTM_HeLa_A485_30min_R1 3 RLSLGAQK 8 1 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 RLS(1)LGAQK;RLS(1)LGAQK;RLS(1)LGAQK ;; 145.95 0.00010783 402400000 574310 452080 384714 572570 670300 770570 1098790 1255560 558290 798380 TRUE FALSE FALSE 702063.2782 504946.8234 527035.7179 603848.0493 603562.5784 810915.8537 864024.5402 947631.9414 670333.6821 599358.5591 1.171357725 0.842478706 0.87933293 1.007490491 1.007014198 1.352972843 1.44158205 1.581076848 1.118418469 1 19.19305981 -6.227549241 4.603908273 1.345534468 0.965356068 0.442534707 0.17408262 0.165560945 8.651398479 0.058250264 0.056472644 5.92E-07 6.227549241 -0.3801784 RLS(ph)LGAQK ddPTM_HeLa_A486_30min_R1 4 RLSLGAQK 8 1 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 RLS(1)LGAQK;RLS(1)LGAQK;RLS(1)LGAQK;RLS(1)LGAQK ;;; 150.09 0.00013977 1304670000 754730 988280 752130 481610 1102250 1402660 1651510 1649570 1022910 1180060 TRUE FALSE FALSE 701827.3244 909965.0935 1043374.879 1121212.419 963995.5269 1229614.07 1238284.73 1273998.921 1111576.662 884565.2951 0.793414944 1.028714442 1.179534043 1.267529289 1.089795781 1.390077225 1.399879395 1.440254245 1.256636077 1 19.75460912 -3.724909635 0.695201889 1.30728134 2.27E-11 0.55990275 0.130406007 3.98824163 0.864282665 0.053349439 4.854541342 0.000188404 3.724909635 -1.30728134 RLS(ph)LLFLGSDMITSPTPTK ddPTM_HeLa_A485_30min_R1 1 RLSLLFLGSDMITSPTPTK 19 1 Q9NZL6;Q9NZL6-2 Q9NZL6 RGL1 Ral guanine nucleotide dissociation stimulator-like 1 1 0 RLS(0.994)LLFLGS(0.006)DMITSPTPTK 75.533 0.0023057 62315000 81773 70956 54465 126510 81128 88745 115850 97550 63542 143940 TRUE FALSE FALSE 99963.12174 79253.68696 74613.86998 133420.921 73050.61146 93391.55097 91097.70109 73625.70955 76294.29656 108058.407 0.92508417 0.73343379 0.690495742 1.234711159 0.67602895 0.864269181 0.843041311 0.681351054 0.706046838 1 16.72145179 -7.041915571 23.69215356 0.768658536 0.850585429 0.015576081 0.169757108 997.3389373 563725.6145 0.078311313 0.045221137 9.08E-08 7.041915571 0.081926893 RLS(ph)LLFLGSDMITSPTPTK ddPTM_HeLa_A486_30min_R1 2 RLSLLFLGSDMITSPTPTK 19 1 Q9NZL6;Q9NZL6-2 Q9NZL6 RGL1 Ral guanine nucleotide dissociation stimulator-like 1 1 0 RLS(0.998)LLFLGS(0.002)DMITSPTPTK;RLS(1)LLFLGSDMITSPTPTK ; 151.84 7.32E-09 103913000 63851 62018 42246 35410 56803 64318 67856 70744 54173 64790 TRUE FALSE FALSE 59375.37463 57103.46781 58604.78259 82436.26952 49678.23807 56383.0991 50877.71109 54637.13553 58868.75926 48566.16229 1.222566738 1.175787114 1.206699888 1.697401352 1.022898161 1.160954386 1.047595871 1.125004179 1.212135291 1 15.56766387 RLS(ph)LMEQVSGVEAFLQASQPPDPHR ddPTM_HeLa_A485_30min_R1 1 RLSLMEQVSGVEAFLQASQPPDPHR 25 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RLS(0.934)LMEQVS(0.066)GVEAFLQASQPPDPHR 155.17 9.14E-10 60700000 10409 13044 16432 10397 16237 13599 15114 16405 9937.3 18311 TRUE FALSE FALSE 12724.44614 14569.38233 22510.88059 10964.96178 14620.38727 14311.02261 11884.77043 12381.64803 11931.62496 13746.40469 0.925656303 1.059868574 1.637583143 0.797660336 1.063578994 1.041073862 0.864573006 0.90071901 0.8679815 1 13.74676672 RLS(ph)LPADIR ddPTM_HeLa_A485_30min_R1 6 RLSLPADIR 9 1 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6;E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;E5RIY8;E5RIU4 Q00537-2;E5RJM2 CDK17;CDK16 Cyclin-dependent kinase 17;Cyclin-dependent kinase 16 1 0 RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR ;;;;; 131.06 0.00013777 8841540000 3495600 3599340 4508410 3909100 4723050 3463980 4083130 3345100 4320620 5081230 TRUE FALSE FALSE 4273184.16 4020251.503 6176258.47 4122644.235 4252806.558 3645348.636 3210735.919 2524708.98 5187728.803 3814572.874 1.120226117 1.053919177 1.619121897 1.080761692 1.114884077 0.955637435 0.841702604 0.661858893 1.359976326 1 21.86309009 -5.944915044 1.986091002 0.936101546 1.242731175 0.232033008 0.219266891 0.448179754 3.591912562 0.079484744 0.090663952 1.14E-06 5.944915044 0.306629629 RLS(ph)LPADIR ddPTM_HeLa_A486_30min_R1 8 RLSLPADIR 9 1 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6;E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;E5RIY8;E5RIU4 Q00537-2;E5RJM2 CDK17;CDK16 Cyclin-dependent kinase 17;Cyclin-dependent kinase 16 1 0 RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR;RLS(1)LPADIR ;;;;;;; 113.99 0.00044048 8387880000 4680278 5374230 4939627 1546532 5300898 4779922 5070912 5142798 4663162 4589138 TRUE FALSE FALSE 4352214.681 4948356.442 6852382.862 3600404.653 4636009.944 4190223.822 3802116.183 3971895.162 5067368.637 3439987.975 1.265183109 1.438480739 1.991978726 1.046632919 1.34768202 1.218092579 1.105270196 1.154624723 1.473077428 1 21.71397209 -5.300599903 24.99999279 1.202575375 1.552541642 0.38730733 0.214541501 556.6486937 355362.2029 0.059915293 0.088870496 5.00E-06 5.300599903 0.349966267 RLS(ph)LPADIRIPDGYLEK ddPTM_HeLa_A485_30min_R1 2 RLSLPADIRIPDGYLEK 17 2 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RLS(1)LPADIRIPDGYLEK;RLS(1)LPADIRIPDGYLEK ; 169.6 1.91E-12 764250000 546400 1002250 574380 484690 954760 1177300 1456430 2441800 614880 510620 TRUE FALSE FALSE 667944.7949 1119454.419 786867.0639 511167.3874 859700.742 1238941.608 1145251.833 1842944.721 738280.776 383331.8313 1.74247151 2.920327319 2.052704732 1.333485366 2.242706376 3.232034249 2.987625183 4.807700721 1.925957397 1 18.54823428 -6.172616906 5.160981367 3.039088919 2.050539202 0.095985566 0.997168372 0.39281509 17.24827412 0.322893586 0.322389456 6.72E-07 6.172616906 -0.988549717 RLS(ph)LPADIRIPDGYLEK ddPTM_HeLa_A486_30min_R1 1 RLSLPADIRIPDGYLEK 17 2 Q00537-2;Q00537;F5H6Z0;F8VQZ9;F8VZY6 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RLS(1)LPADIRIPDGYLEK 108.4 8.05E-05 321150000 204170 175810 117320 425590 265670 180680 242590 270920 109070 293690 TRUE FALSE FALSE 189858.7373 161878.1753 162749.4459 990795.0281 232347.1913 158389.5386 181891.4161 209237.4301 118524.2754 220148.1124 0.862413651 0.735314846 0.739272502 4.500583799 1.055413053 0.719468075 0.826222919 0.950439356 0.538384246 1 17.74811495 -5.982359296 24.99950988 0.814170512 1.72145805 0.147981974 1.026495872 509.4824038 722008.8812 0.336889686 0.381926066 1.04E-06 5.982359296 0.907287537 RLS(ph)LPADIRLPEGYLEK ddPTM_HeLa_A485_30min_R1 2 RLSLPADIRLPEGYLEK 17 2 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;E5RIY8;E5RIU4 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 RLS(1)LPADIRLPEGYLEK;RLS(1)LPADIRLPEGYLEK ; 234.21 1.59E-42 1932780000 1267780 1854990 1373570 1131720 1974230 2003310 2639500 3405100 1539300 1549950 TRUE FALSE FALSE 1549793.287 2071914.944 1881710.702 1193542.998 1777668.729 2108200.214 2075549.262 2569993.886 1848223.391 1163575.99 1.331922711 1.780644292 1.61717904 1.025754234 1.52776333 1.811828563 1.783767696 2.208703092 1.588399389 1 20.150134 -6.165783636 5.250833183 1.759835309 1.454653226 0.075459003 0.338393891 0.442212544 19.05553134 0.111254191 0.111226728 6.83E-07 6.165783636 -0.305182083 RLS(ph)LPADIRLPEGYLEK ddPTM_HeLa_A486_30min_R1 3 RLSLPADIRLPEGYLEK 17 2 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5;E5RIY8;E5RIU4 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 RLS(1)LPADIRLPEGYLEK;RLS(1)LPADIRLPEGYLEK;RLS(1)LPADIRLPEGYLEK ;; 265.62 3.21E-52 3316962000 2899865 2707309 2270437 1352925.8 3957292 2768162 3723925 3970044 2250619 3633262 TRUE FALSE FALSE 2696599.438 2492771.975 3149611.011 3149679.635 3460931.537 2426654.317 2792159.577 3066151.647 2445704.467 2723469.547 0.990133869 0.915292766 1.156470068 1.156495265 1.270780333 0.891015771 1.025221516 1.125825567 0.89801058 1 21.3770143 -6.293166876 24.9996607 0.998204242 1.09420985 0.197251011 0.109692577 1429.13298 1126079.321 0.041606561 0.036696535 5.09E-07 6.293166876 0.096005608 RLS(ph)LPGLLSQVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 RLSLPGLLSQVSPR 14 1 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 2 0 RLS(1)LPGLLS(0.317)QVS(0.683)PR;RLS(1)LPGLLS(0.005)QVS(0.995)PR;RLS(1)LPGLLS(0.017)QVS(0.983)PR;RLS(1)LPGLLS(0.14)QVS(0.86)PR ;;; 133.41 6.43E-06 638980000 431310 661030 665620 424181 728230 551610 624290 753640 581160 580950 TRUE FALSE FALSE 527253.4215 738331.7083 911860.5368 447352.9339 655724.8642 580491.4466 490905.3415 568808.6083 697793.4813 436129.8566 1.208936773 1.692917137 2.090800533 1.025733339 1.503508311 1.331005979 1.12559444 1.304218456 1.599967236 1 18.73439823 -5.277182944 24.9989386 1.288933783 1.667088105 0.31191911 0.267268939 987.4751511 1567992.879 0.07485094 0.111432802 5.28E-06 5.277182944 0.378154322 RLS(ph)LPGLLSQVS(ph)PR ddPTM_HeLa_A486_30min_R1 4 RLSLPGLLSQVSPR 14 1 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 2 0 RLS(1)LPGLLS(0.004)QVS(0.996)PR;RLS(1)LPGLLS(0.004)QVS(0.996)PR;RLS(1)LPGLLS(0.013)QVS(0.987)PR;RLS(1)LPGLLS(0.003)QVS(0.997)PR ;;; 141.45 4.85E-08 551261000 504902 540690 495883 178759 628200 465779 530330 553460 457882 520076 TRUE FALSE FALSE 469510.9771 497843.7552 687902.1778 416159.986 549405.2983 408315.9227 397635.8247 427449.2399 497571.5804 389845.5845 1.204351148 1.277028072 1.764550389 1.06749955 1.409289524 1.0473786 1.019982887 1.096457821 1.276329912 1 18.57254327 -6.263880598 24.94692187 1.089805516 1.348735229 0.331693972 0.181996469 260.5135902 2662188.315 0.062621362 0.057808279 5.45E-07 6.263880598 0.258929713 RLS(ph)LPMDIR ddPTM_HeLa_A485_30min_R1 4 RLSLPMDIR 9 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6RA44;D6RGH0 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RLS(1)LPMDIR;RLS(1)LPMDIR;RLS(1)LPMDIR;RLS(1)LPMDIR ;;; 127.71 0.00015898 761508000 589094 834940 877530 632126 1010370 807570 923180 1055780 824050 874570 TRUE FALSE FALSE 720135.9279 932578.97 1202164.864 666657.4428 909774.0152 849853.1165 725935.0513 796848.2996 989429.2764 656555.7943 1.096838889 1.420410844 1.831017066 1.015385819 1.385676622 1.294411113 1.105671533 1.213679487 1.506999535 1 19.32455809 -5.297996942 24.99992211 1.231871344 1.446521949 0.185156958 0.221573284 1017.912045 696097.7332 0.062093697 0.092102867 5.04E-06 5.297996942 0.214650605 RLS(ph)LPMDIR ddPTM_HeLa_A486_30min_R1 5 RLSLPMDIR 9 1 A0A0A0MSJ6;Q07002;Q07002-3;D6R9B0;D6RA44;D6RGH0 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RLS(1)LPMDIR;RLS(1)LPMDIR;RLS(1)LPMDIR;RLS(1)LPMDIR;RLS(1)LPMDIR ;;;; 112.08 0.000494 841470000 1002861 1112324 999111 362548 1214335 988298 1067512 1205676 903728 984737 TRUE FALSE FALSE 932565.6227 1024179.395 1385993.536 844030.0662 1062021.781 866371.841 800409.2066 931169.8945 982063.8707 738152.4456 1.263378084 1.38749035 1.877652163 1.143435981 1.438756706 1.173703137 1.084341333 1.261487244 1.330435029 1 19.49355927 -5.864190445 1.544528603 1.186333933 1.473265599 0.281490971 0.197186933 0.52370037 2.58821648 0.075615594 0.094209515 1.37E-06 5.864190445 0.286931667 RLS(ph)LPSSK ddPTM_HeLa_A485_30min_R1 4 RLSLPSSK 8 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 RLS(1)LPSSK;RLS(1)LPSSK;RLS(1)LPSSK;RLS(1)LPSSK ;;; 104.07 0.00090339 938090000 934590 1089840 923240 1065970 1420900 1216270 1429850 1611730 985730 1406060 TRUE FALSE FALSE 1142486.321 1217287.308 1264784.895 1124201.242 1279430.207 1279952.016 1124350.867 1216450.69 1183556.969 1055555.119 1.08235591 1.153220032 1.198217765 1.065033196 1.212092277 1.212586623 1.065174946 1.152427447 1.121264961 1 20.00957048 -8.889784151 0.745658344 0.996186822 1.147498201 0.387002841 0.053551798 4.229375996 2.735334378 0.097275275 0.018909786 1.29E-09 8.889784151 0.151311378 RLS(ph)LPSSK ddPTM_HeLa_A486_30min_R1 3 RLSLPSSK 8 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 RLS(1)LPSSK;RLS(1)LPSSK;RLS(1)LPSSK ;; 89.805 0.0023436 933788000 1284610 1268130 927300 488743 1425550 1282990 1553260 1562950 1062650 1565570 TRUE FALSE FALSE 1194565.473 1167638.76 1286375.394 1137818.404 1246744.226 1124707.738 1164617.919 1207100.404 1154761.358 1173541.082 1.017915343 0.994970503 1.096148583 0.969559925 1.062377999 0.958388041 0.992396378 1.028596632 0.983997387 1 20.16243692 -6.260854283 24.99999668 0.994445522 1.026866447 0.193383847 0.036129284 98.30801414 4200499.61 0.011847722 0.011167895 5.48E-07 6.260854283 0.032420926 RLS(ph)LQPR ddPTM_HeLa_A485_30min_R1 1 RLSLQPR 7 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 RLS(1)LQPR 134.26 0.00094792 113860000 30411 34674 36326 28300 41290 32251 42814 45537 37657 41605 TRUE FALSE FALSE 37175.82203 38728.82268 49764.49905 29845.95734 37179.02262 33939.61249 33666.43914 34368.97935 45214.41449 31233.63918 1.190249456 1.239971508 1.593298135 0.95557092 1.190351928 1.086636504 1.077890378 1.100383441 1.447619159 1 14.93081305 -5.278150719 24.99883994 1.126275814 1.331052926 0.28232406 0.159351791 1079.442165 1614757.748 0.044309209 0.065928944 5.27E-06 5.278150719 0.204777112 RLS(ph)LQPR ddPTM_HeLa_A486_30min_R1 1 RLSLQPR 7 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 RLS(1)LQPR 145.84 0.00071054 112420000 62190 52840 46495 16959 60849 60362 58829 71777 43890 55658 TRUE FALSE FALSE 57830.80215 48652.76596 64499.10918 39481.40906 53216.75103 52915.15016 44109.36197 55434.94398 47694.42054 41720.87453 1.386135905 1.166149236 1.545967334 0.946322662 1.275542558 1.268313542 1.057249218 1.328710019 1.14317883 1 15.34848178 -8.870823142 0.031491878 9.46E-11 2.233228039 0.228675319 0.154382898 475.3764397 4.942489308 192.946433 156.6619165 1.35E-09 8.870823142 2.233228039 RLS(ph)LTLR ddPTM_HeLa_A485_30min_R1 2 RLSLTLR 7 1 Q00537-2;Q00537;F8VQZ9;F8VZY6;F8VUX2;F8W1S5 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RLS(1)LTLR;RLS(0.997)LT(0.003)LR ; 120.33 0.0011975 479520000 118440 129030 158468 92711 136948 119365 119817 150072 112835 123808 TRUE FALSE FALSE 144786.5694 144118.9361 217091.9076 97775.56717 123312.9763 125614.7668 94217.11914 113266.6067 135479.9495 92944.94412 1.557767028 1.550583923 2.335704321 1.051972951 1.326731405 1.351496502 1.013687404 1.218641937 1.45763657 1 16.50408877 -5.28964668 24.98010865 1.215460705 1.788275186 0.560949837 0.247531881 524.6081262 464586.632 0.069009194 0.102379475 5.13E-06 5.28964668 0.572814481 RLS(ph)LTLR ddPTM_HeLa_A486_30min_R1 2 RLSLTLR 7 1 Q00537-2;Q00537;F8VQZ9;F8VZY6;F8VUX2;F8W1S5 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 0 RLS(1)LTLR;RLS(1)LTLR ; 160.18 0.00016935 588280000 124404 112512 103901 45296 123484 105675 110072 124024 97697 104503 TRUE FALSE FALSE 115683.922 103596.1394 144134.2498 105451.3771 107995.4853 92637.89292 82530.82138 95786.44262 106165.4546 78334.7686 1.476788967 1.322479676 1.839977986 1.346163128 1.378640509 1.182589731 1.05356565 1.222783246 1.355278844 1 16.25736516 -5.945703417 1.87037708 1.170014354 1.519514303 0.510179562 0.156809781 0.294544245 2.097043443 0.057966657 0.066333448 1.13E-06 5.945703417 0.349499949 RLS(ph)LTMGGVQAR ddPTM_HeLa_A485_30min_R1 4 RLSLTMGGVQAR 12 1 O75815;O75815-3 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 RLS(1)LTMGGVQAR;RLS(1)LTMGGVQAR;RLS(0.999)LT(0.001)MGGVQAR;RLS(1)LTMGGVQAR ;;; 228.97 1.22E-23 3230050000 693178 910591 855685 605361 914493 829439 951300 1063240 772734 865170 TRUE FALSE FALSE 847373.0547 1017076.696 1172238.49 638430.3386 823442.8659 872867.1435 748046.9836 802478.7229 927814.6259 649499.0413 1.304656359 1.565940258 1.804834827 0.982958092 1.267812289 1.343908286 1.151729157 1.235534884 1.428508076 1 19.30896787 -5.262522764 24.99947706 1.217930711 1.559223451 0.47366457 0.1718355 87.68839181 2023458.474 0.047344639 0.07500514 5.46E-06 5.262522764 0.34129274 RLS(ph)LTMGGVQAR ddPTM_HeLa_A486_30min_R1 3 RLSLTMGGVQAR 12 1 O75815;O75815-3 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 RLS(1)LTMGGVQAR;RLS(1)LTMGGVQAR;RLS(1)LTMGGVQAR ;; 218.2 3.87E-23 1745410000 743410 803170 713210 301650 912630 713660 873330 869910 624660 708720 TRUE FALSE FALSE 691300.798 739523.8841 989384.0124 702256.4445 798159.4355 625615.8852 654813.5969 671850.483 678806.0318 531251.899 1.301267439 1.392039982 1.862363249 1.321889759 1.50241239 1.177625692 1.232585894 1.264655212 1.277747963 1 19.01903657 -6.25967378 24.9068807 1.20969283 1.484233978 0.432177448 0.162732966 158.37989 2234238.311 0.055510285 0.052758297 5.50E-07 6.25967378 0.274541148 RLS(ph)MEIEK ddPTM_HeLa_A485_30min_R1 1 RLSMEIEK 8 1 P35240-4;P35240-6;P35240-5;P35240-8;P35240-3;P35240;P35240-2;A0A5K1VW66 P35240-4 NF2 Merlin 1 0 RLS(1)MEIEK 127.56 0.00034301 656500000 620310 646050 471930 783960 659140 739340 905350 972120 606630 1123300 TRUE FALSE FALSE 758295.8195 721599.9276 646516.5456 826785.7497 593513.7072 778050.6992 711914.5765 733706.0458 728375.0767 843281.9828 0.899219757 0.855704192 0.766667092 0.980438058 0.70381405 0.922645942 0.844218886 0.870060147 0.863738455 1 19.68565561 -9.47890011 0.586194872 1.019141128 0.850391203 0.260831722 0.072912302 13.67276434 3.876600621 0.620645774 0.028462348 3.32E-10 9.47890011 -0.168749925 RLS(ph)MEIEK ddPTM_HeLa_A486_30min_R1 1 RLSMEIEK 8 1 P35240-4;P35240-6;P35240-5;P35240-8;P35240-3;P35240;P35240-2;A0A5K1VW66 P35240-4 NF2 Merlin 1 0 RLS(1)MEIEK 126.34 0.00035199 1302500000 1276400 1408600 983860 482330 1429900 1288300 1413400 1349500 1040000 1392500 TRUE FALSE FALSE 1186930.951 1296977.406 1364836.941 1122888.616 1250548.609 1129362.644 1059752.371 1042248.309 1130148.037 1043808.936 1.137115146 1.242542922 1.307554374 1.075760684 1.198062754 1.081962996 1.015274284 0.998504873 1.082715426 1 19.99342623 -6.216235346 1.127550967 1.01874207 1.215433796 0.624679756 0.061610574 0.314537153 0.832403857 0.031918853 0.030027592 6.08E-07 6.216235346 0.196691726 RLS(ph)MENEELLWK ddPTM_HeLa_A485_30min_R1 3 RLSMENEELLWK 12 1 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 RLS(1)MENEELLWK;RLS(1)MENEELLWK;RLS(1)MENEELLWK ;; 195.92 2.98E-14 294207000 538090 604180 452130 612420 629390 636880 778050 820570 516300 958370 TRUE FALSE FALSE 657786.2641 674833.5953 619391.7017 645874.9539 566725.7217 670226.052 611813.2614 619323.9209 619916.6742 719465.9965 0.914270122 0.937964544 0.860904761 0.897714356 0.787703275 0.931560429 0.850371337 0.860810551 0.861634431 1 19.45656698 -4.76040454 24.99723997 0.874294904 0.926117343 0.08978839 0.053387411 49.73992379 1201344.259 0.012734435 0.029964236 1.74E-05 4.76040454 0.051822439 RLS(ph)MENEELLWK ddPTM_HeLa_A486_30min_R1 4 RLSMENEELLWK 12 1 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 RLS(1)MENEELLWK;RLS(1)MENEELLWK;RLS(1)MENEELLWK;RLS(1)MENEELLWK ;;; 171.78 6.99E-11 359017000 805690 779810 584640 286151 908960 770650 857410 843730 747200 944240 TRUE FALSE FALSE 749215.2916 718015.0156 811028.2652 666173.9893 794949.7611 675575.0384 642876.9492 651631.0975 811967.8976 707796.158 1.058518449 1.014437571 1.145850053 0.941194695 1.123133761 0.954476837 0.908279795 0.920647972 1.1471776 1 19.43297441 -6.28781612 24.61028541 0.976292144 1.052827011 0.153416606 0.080948138 1119.091786 1044141.761 0.027882398 0.024598099 5.15E-07 6.28781612 0.076534867 RLS(ph)NLPTVDPIAVCHELYNTIR ddPTM_HeLa_A485_30min_R1 3 RLSNLPTVDPIAVCHELYNTIR 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RLS(0.99)NLPT(0.01)VDPIAVCHELYNTIR;RLS(0.997)NLPT(0.003)VDPIAVCHELYNTIR;RLS(0.976)NLPT(0.024)VDPIAVCHELYNTIR ;; 216.69 5.26E-36 1994140000 331597 379491 441810 330376 481290 351978 394695 364069 311810 344817 TRUE FALSE FALSE 405359.6087 423869.1713 605253.9042 348423.6043 433371.0777 370407.0238 310365.1889 274780.5069 374387.4069 258860.4678 1.565938639 1.637442654 2.338147302 1.345990013 1.674149326 1.430913832 1.198967117 1.061500465 1.44629039 1 17.98181513 -6.300692255 1.117403912 1.161498074 1.781988107 0.49635347 0.256988357 0.419243394 1.085464153 0.13888461 0.120792368 5.00E-07 6.300692255 0.620490033 RLS(ph)NLPTVDPIAVCHELYNTIR ddPTM_HeLa_A486_30min_R1 2 RLSNLPTVDPIAVCHELYNTIR 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-9;Q86U86-2;Q86U86-6;Q86U86-3;C9JCJ2;C9J053;C9JQF1;C9JPI5 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RLS(0.995)NLPT(0.005)VDPIAVCHELYNTIR;RLS(1)NLPTVDPIAVCHELYNTIR ; 233.86 3.47E-38 1119040000 593530 699990 588930 212547 715690 566050 647320 688040 566240 656030 TRUE FALSE FALSE 551926.612 644520.2431 816979.4681 494820.1575 625921.4867 496216.5062 485353.6893 531388.3118 615322.1391 491755.818 1.122359089 1.310650977 1.661351911 1.006231425 1.272829855 1.009070941 0.986981082 1.080593848 1.251275769 1 18.9075826 -5.300569587 24.99994966 1.090434332 1.359374116 0.401716307 0.155424191 534.5743508 341533.7934 0.044167724 0.065512345 5.01E-06 5.300569587 0.268939783 RLS(ph)NSHHK ddPTM_HeLa_A485_30min_R1 2 RLSNSHHK 8 1 A0A5F9ZH43;A4UGR9-2;A4UGR9-3;A4UGR9;A4UGR9-8 A0A5F9ZH43 XIRP2 Xin actin-binding repeat-containing protein 2 1 0 RLS(0.999)NS(0.001)HHK;RLS(1)NSHHK ; 51.927 0.029969 915210000 790160 1930440 2341500 801320 1801850 1370540 1169090 1455400 1495220 1185940 TRUE FALSE FALSE 965928.366 2156188.165 3207718.288 845094.0826 1622451.487 1442299.355 919304.3709 1098460.868 1795296.939 890306.9836 1.084938548 2.421847975 3.602935108 0.949216504 1.822350624 1.620002293 1.0325701 1.233800125 2.016492033 1 19.76394335 -5.299201108 24.998531 1.405500759 2.375103295 0.321902626 0.656395694 651.0774581 431016.4734 0.186036358 0.275942801 5.02E-06 5.299201108 0.969602536 RLS(ph)NVSLPGPGLSVPRPLQPEYVALPSEESHVHQEPSKR ddPTM_HeLa_A486_30min_R1 1 RLSNVSLPGPGLSVPRPLQPEYVALPSEESHVHQEPSKR 39 3 O94806;O94806-2;C9JKP8 O94806 PRKD3 Serine/threonine-protein kinase D3 1 0 RLS(0.844)NVS(0.156)LPGPGLSVPRPLQPEYVALPSEESHVHQEPSKR 136.46 1.43E-07 158110000 129270 100990 87328 27554 140190 98953 125200 125510 103670 119410 TRUE FALSE FALSE 120208.8406 92987.1846 121143.7403 64147.1045 122606.063 86745.18494 93873.63577 96934.11286 112656.1991 89508.95877 1.342981107 1.038858969 1.353425869 0.716655689 1.369763034 0.969122936 1.04876246 1.082954312 1.258602498 1 16.44974447 -1.76906713 1.304383077 1.089315255 199.803382 0.132772915 0.185934648 2600.078732 7.099796863 0.050049155 1542948.29 0.017018954 1.76906713 198.7140668 RLS(ph)PAER ddPTM_HeLa_A485_30min_R1 7 RLSPAER 7 1 P41212 P41212 ETV6 Transcription factor ETV6 1 0 RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER ;;;;;; 96.957 0.0030769 6566810000 415607.3 666177 714717 433809 661305 590998 645412 720386 570059 595064 TRUE FALSE FALSE 508057.7101 744080.6052 979120.5602 457506.8872 595463.1522 621941.7414 507514.4537 543710.204 684464.6124 446725.4961 1.137292844 1.665632724 2.191772282 1.024134264 1.3329509 1.392223517 1.136076759 1.217101349 1.53218166 1 18.76902907 -5.293387241 24.99890391 1.249264923 1.664973115 0.329934211 0.281088933 766.5588999 599823.5913 0.079287454 0.117613475 5.09E-06 5.293387241 0.415708192 RLS(ph)PAER ddPTM_HeLa_A486_30min_R1 6 RLSPAER 7 1 P41212 P41212 ETV6 Transcription factor ETV6 1 0 RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER;RLS(1)PAER ;;;;; 92.611 0.0036554 5744350000 714581 760110 772887 271609 875717 655290 782156 820377 645845 744199 TRUE FALSE FALSE 664492.562 699876.1153 1072169.545 632319.4784 765876.4081 574446.9823 586452.296 633595.0658 701827.3646 557846.7265 1.191174081 1.25460289 1.921978734 1.133500383 1.372915483 1.029757736 1.051278547 1.135787011 1.258100714 1 19.08950926 -5.933438803 1.874622455 1.105366261 1.419941409 0.285539113 0.214676758 0.450878898 3.229925659 0.079676976 0.091979267 1.17E-06 5.933438803 0.314575148 RLS(ph)PGSDIYVTVSSMALAR ddPTM_HeLa_A485_30min_R1 2 RLSPGSDIYVTVSSMALAR 19 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 RLS(0.998)PGS(0.002)DIYVTVSSMALAR;RLS(0.99)PGS(0.01)DIYVTVSSMALAR ; 261.78 1.98E-58 956650000 266630 366240 369950 267400 406550 328150 391420 458500 325640 388190 TRUE FALSE FALSE 325940.9236 409068.5821 506809.8999 282007.3849 366072.4545 345331.4266 307789.9194 346052.1561 390992.9611 291421.3771 1.118452349 1.403701356 1.73909651 0.967696288 1.256161981 1.184990031 1.056167953 1.187463183 1.341675635 1 18.15274718 -5.280923648 24.99822083 1.152802028 1.418745278 0.344172084 0.175662148 926.5299016 1188731.046 0.049490487 0.073521088 5.24E-06 5.280923648 0.265943251 RLS(ph)PGSDIYVTVSSMALAR ddPTM_HeLa_A486_30min_R1 2 RLSPGSDIYVTVSSMALAR 19 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 RLS(1)PGSDIYVTVSSMALAR;RLS(0.999)PGS(0.001)DIYVTVSSMALAR ; 258.05 2.78E-58 739170000 453550 457460 461200 206520 572440 439190 499070 519770 409240 510860 TRUE FALSE FALSE 421758.4871 421209.2036 639788.9914 480788.9969 500639.2374 385007.2032 374197.4074 401429.7175 444713.2527 382937.3309 1.101377309 1.099942914 1.670740719 1.25552919 1.307365976 1.005405251 0.977176622 1.048290896 1.161321232 1 18.54674878 -6.258559693 24.57367525 1.03762809 1.296171186 0.390844122 0.154936077 221.4084552 1889383.637 0.054860482 0.052573061 5.51E-07 6.258559693 0.258543096 RLS(ph)PIMLGK ddPTM_HeLa_A485_30min_R1 1 RLSPIMLGK 9 1 Q6ICB0 Q6ICB0 DESI1 Desumoylating isopeptidase 1 1 0 RLS(1)PIMLGK 109 0.00058078 86880000 20767 19085 24199 25035 32385 29235 31987 36227 23350 30151 TRUE FALSE FALSE 25386.5475 21316.82473 33151.2171 26402.59866 29160.63569 30765.69939 25152.71614 27342.27145 28036.13082 22634.91059 1.121566061 0.94176757 1.464605613 1.166454736 1.288303551 1.359214532 1.111235498 1.20796905 1.23862344 1 14.46626199 -10.41173346 3.643085891 0.998472275 1.212905021 0.177653074 0.13619216 16538911.33 16618242.09 177983.6655 0.033065287 3.87E-11 10.41173346 0.214432746 RLS(ph)PIMLGK ddPTM_HeLa_A486_30min_R1 1 RLSPIMLGK 9 1 Q6ICB0 Q6ICB0 DESI1 Desumoylating isopeptidase 1 1 0 RLS(1)PIMLGK 102.62 0.00088168 118080000 401380 441970 318410 161900 520400 461130 531260 537960 390180 492880 TRUE FALSE FALSE 373245.3347 406946.6876 441706.8793 376911.382 455126.5795 404240.469 398333.1289 415478.2516 424001.1166 369459.6399 1.010246572 1.101464527 1.195548395 1.020169299 1.231870901 1.094139726 1.07815059 1.124556533 1.147624993 1 18.49505725 -4.283333139 4.615762793 1.117010016 1.0053564 0.1621464 0.067469985 0.275700751 14.96922727 0.015685117 0.094403428 5.21E-05 4.283333139 -0.111653616 RLS(ph)PISGSR ddPTM_HeLa_A485_30min_R1 4 RLSPISGSR 9 1 E9PQ01 E9PQ01 PCF11 1 0 RLS(0.998)PIS(0.001)GSR;RLS(1)PISGSR;RLS(1)PISGSR;RLS(0.999)PIS(0.001)GSR ;;; 89.43 0.0021477 2645790000 594001 1031800 1080260 402980 1148170 943188 914595 1225940 891020 522732 TRUE FALSE FALSE 726134.4732 1152460.035 1479893.127 424993.777 1033854.163 992571.8652 719184.3067 925276.2928 1069839.541 392424.5326 1.850379915 2.936768573 3.771153444 1.082994924 2.634529897 2.529331841 1.832669079 2.35784518 2.72623002 1 18.58205571 -10.94014829 2.545747499 6.45E-27 2.420911813 0.27644944 0.685959382 17521314.7 9710814.612 104062047.9 0.172893753 1.15E-11 10.94014829 2.420911813 RLS(ph)PISGSR ddPTM_HeLa_A486_30min_R1 4 RLSPISGSR 9 1 E9PQ01 E9PQ01 PCF11 1 0 RLS(1)PISGSR;RLS(0.989)PIS(0.009)GS(0.001)R;RLS(1)PISGSR;RLS(0.999)PIS(0.001)GSR ;;; 89.43 0.0021477 3741170000 890650 1003590 945060 262435 1135580 722470 794240 828430 753330 659380 TRUE FALSE FALSE 828220.0343 924061.8734 1311012.542 610961.9427 993144.9675 633338.9969 595512.7514 639814.5735 818629.251 494266.9562 1.675653256 1.869560289 2.652438172 1.236097083 2.009329078 1.281370298 1.204840307 1.294471673 1.6562492 1 18.91493093 -6.015337924 1.294962146 1.292736563 1.976690418 0.381799719 0.368681304 0.467790636 1.626901459 0.158718137 0.177484785 9.65E-07 6.015337924 0.683953854 RLS(ph)PPACTLR ddPTM_HeLa_A485_30min_R1 1 RLSPPACTLR 10 1 P28360 P28360 MSX1 Homeobox protein MSX-1 1 0 RLS(1)PPACTLR 96.866 0.00075121 0 43548 59368 66445 48098 79288 59256 62938 77712 66851 60672 TRUE FALSE FALSE 53235.10236 66310.57117 91025.77051 50725.47195 71393.80832 62358.55253 49490.78214 58653.01015 80267.38251 45547.58699 1.16877986 1.455852561 1.998476243 1.113680774 1.567455337 1.369085755 1.086573086 1.28773035 1.76227519 1 15.475087 -6.516877814 24.61381584 1.296651804 1.470864265 0.074029023 0.292537982 671.2270813 2753175.035 0.109112917 0.087446794 3.04E-07 6.516877814 0.174212461 RLS(ph)PPACTLR ddPTM_HeLa_A486_30min_R1 2 RLSPPACTLR 10 1 P28360 P28360 MSX1 Homeobox protein MSX-1 1 0 RLS(1)PPACTLR;RLS(1)PPACTLR ; 98.582 0.00070284 151710000 106478 117316 95249 38683.2 123772 117904 133135 128223 100585 125758 TRUE FALSE FALSE 99014.44205 108019.4529 132131.9637 90056.44454 108247.3616 103358.2032 99823.21484 99029.42199 109303.7888 94267.37825 1.05035744 1.145883708 1.401672202 0.955329895 1.148301392 1.096436595 1.058937001 1.050516349 1.159508101 1 16.52447098 -5.294733173 24.99990321 1.073386661 1.19396268 0.26739083 0.099846192 891.8231531 669657.4779 0.027853515 0.04131637 5.07E-06 5.294733173 0.120576019 RLS(ph)PPSSSAASSYSFSDLNSTR ddPTM_HeLa_A485_30min_R1 3 RLSPPSSSAASSYSFSDLNSTR 22 1 P50402 P50402 EMD Emerin 1 0 RLS(0.779)PPS(0.074)S(0.074)S(0.074)AASSYSFSDLNSTR;RLS(0.9)PPS(0.065)S(0.027)S(0.008)AASSYSFSDLNSTR;RLS(0.997)PPS(0.001)S(0.001)S(0.001)AASSYSFSDLNSTR ;; 132.53 8.56E-07 5587000000 492210 492340 380084 765720 521580 403865 502590 572770 416920 1080980 TRUE FALSE FALSE 601700.4164 549914.8802 520692.8882 807549.3447 469649.6638 425010.7469 395207.5407 432297.2594 500592.0198 811511.58 0.741456353 0.677642678 0.641633343 0.995117463 0.578734396 0.523727273 0.487001727 0.532706212 0.61686368 1 19.63025216 RLS(ph)PPSSSAASSYSFSDLNSTR ddPTM_HeLa_A486_30min_R1 2 RLSPPSSSAASSYSFSDLNSTR 22 1 P50402 P50402 EMD Emerin 1 0 RLS(0.892)PPS(0.032)S(0.032)S(0.045)AASSYSFSDLNSTR;RLS(0.819)PPS(0.054)S(0.054)S(0.073)AASSYSFSDLNSTR ; 150.62 7.05E-10 3956800000 436940 453980 368190 338070 419700 360100 412870 353330 408490 566540 TRUE FALSE FALSE 406312.7624 418004.9714 510763.0285 787044.0451 367057.3125 315674.5232 309565.5591 272884.4721 443898.2421 424674.6964 0.956762354 0.984294508 1.202715944 1.853286885 0.864325837 0.743332546 0.728947502 0.642572949 1.04526652 1 18.69599863 -5.968265876 24.99853929 0.803307088 1.2434878 0.381288733 0.255950022 206.651752 162788.9471 0.082919817 0.094021528 1.08E-06 5.968265876 0.440180712 RLS(ph)PPSSSAASSYSFSDLNSTRGDADMYDLPK ddPTM_HeLa_A485_30min_R1 2 RLSPPSSSAASSYSFSDLNSTRGDADMYDLPK 32 2 P50402 P50402 EMD Emerin 1 0 RLS(0.947)PPS(0.04)S(0.01)S(0.003)AASSYSFSDLNSTRGDADMYDLPK;RLS(0.998)PPS(0.001)SSAASSYSFSDLNSTRGDADMYDLPK ; 233.17 1.64E-40 952200000 162363 201685 96762 136543 164699 231638 239010 465350 151159 300798 TRUE FALSE FALSE 198480.0892 225270.3063 132558.2904 144001.9983 148300.9893 243766.2075 187943.561 351222.1829 181495.2248 225814.5944 0.878951556 0.997589668 0.587022689 0.63770014 0.656737841 1.079497134 0.832291471 1.555356437 0.803735584 1 17.7847792 -6.271526629 24.05832567 1.075018148 0.749795456 0.314248308 0.222415483 502.9484293 1199539.255 0.077804304 0.069469199 5.35E-07 6.271526629 -0.325222693 RLS(ph)PPSSSAASSYSFSDLNSTRGDADMYDLPK ddPTM_HeLa_A486_30min_R1 2 RLSPPSSSAASSYSFSDLNSTRGDADMYDLPK 32 2 P50402 P50402 EMD Emerin 1 0 RLS(0.979)PPS(0.015)S(0.003)S(0.003)AASSYSFSDLNSTRGDADMYDLPK;RLS(0.999)PPS(0.001)SSAASSYSFSDLNSTRGDADMYDLPK ; 246.44 3.88E-51 608800000 351550 252568 192206 96055 368360 220554 322240 291990 220323 371930 TRUE FALSE FALSE 326908.1604 232553.5918 266633.3107 223620.8944 322156.854 193344.2899 241612.1437 225510.2511 239420.775 278796.3071 1.172569909 0.834134405 0.956373179 0.802094176 1.155527694 0.693496596 0.866626055 0.808871012 0.858765948 1 18.08885193 -6.275605603 24.99869855 0.83492351 0.964150006 0.208265727 0.131451512 1347.366111 2377649.111 0.043876381 0.038871297 5.30E-07 6.275605603 0.129226495 RLS(ph)PQPQIR ddPTM_HeLa_A485_30min_R1 4 RLSPQPQIR 9 1 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88;C9JU82;Q49A88-2;Q49A88-3 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 0 RLS(1)PQPQIR;RLS(1)PQPQIR;RLS(1)PQPQIR;RLS(1)PQPQIR ;;; 105.13 0.00068941 1494150000 1273370 1169910 1020730 2048070 1570980 1375670 2127740 1948940 1153430 2870810 TRUE FALSE FALSE 1556626.763 1306720.798 1398340.503 2159950.878 1414567.715 1447697.954 1673130.967 1470959.409 1384912.821 2155169.9 0.722275661 0.606319157 0.64883075 1.002218376 0.656360185 0.671732634 0.776333674 0.682525962 0.642600298 1 21.03937018 -10.80121479 2.38394423 1.096076616 0.713879726 0.395271387 0.106798648 16090554.31 9988661.367 8925716.21 0.028268733 1.58E-11 10.80121479 -0.38219689 RLS(ph)PQPQIR ddPTM_HeLa_A486_30min_R1 4 RLSPQPQIR 9 1 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88;C9JU82;Q49A88-2;Q49A88-3 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 0 RLS(1)PQPQIR;RLS(1)PQPQIR;RLS(1)PQPQIR;RLS(1)PQPQIR ;;; 103.46 0.00080096 1129990000 1248720 1246470 725830 909800 1157860 1555090 1960010 1790010 1116010 2521820 TRUE FALSE FALSE 1161191.176 1147695.178 1006890.814 2118060.379 1012630.402 1363238.807 1469594.767 1382463.799 1212746.645 1890339.858 0.614276407 0.607136951 0.532650682 1.120465386 0.535686955 0.721160696 0.777423573 0.73133082 0.641549529 1 20.8502142 -14 0.213173526 2.410685271 0.662766634 0.239681186 0.160941162 227.0950453 2.267566971 137.7580916 0.332169157 1.00E-14 14 -1.747918637 RLS(ph)PS(ph)AS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 RLS(1)PS(1)AS(1)PPR;RLS(1)PS(1)AS(1)PPR ; 56.599 0.0245 2018130000 375450 581920 593170 451160 668330 579900 637770 701610 523650 578700 TRUE FALSE FALSE 458967.5572 649970.482 812608.2669 475805.7284 601788.7186 610262.6673 501505.2294 529539.0474 628741.7518 434440.7402 1.05645607 1.496108495 1.87046976 1.09521434 1.385203235 1.404708654 1.154369706 1.218898226 1.447243994 1 18.72879987 -10.82536494 0.197861333 0.600619114 1.44725056 0.170694805 0.226968568 53.84844666 1.675854168 10.88445594 0.668356738 1.49E-11 10.82536494 0.846631446 RLS(ph)PS(ph)AS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 RLS(1)PS(1)AS(1)PPR;RLS(1)PS(1)AS(1)PPR ; 62.377 0.017001 2168700000 1224260 1358470 1251020 462910 1634490 1205960 1239600 1342380 1168550 1327620 TRUE FALSE FALSE 1138445.696 1250819.89 1735448.447 1077677.874 1429477.023 1057180.917 929438.9688 1036749.378 1269840.855 995175.3106 1.143964972 1.256883964 1.74386204 1.082902543 1.436407242 1.062306214 0.933944963 1.041775622 1.275997145 1 19.92459117 -6.276041762 23.13988615 1.057361953 1.33753948 0.341911482 0.18715772 351.5003652 557007.5556 0.065755076 0.058309184 5.30E-07 6.276041762 0.280177528 RLS(ph)PS(ph)ASPPR ddPTM_HeLa_A485_30min_R1 3 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RLS(0.951)PS(0.644)AS(0.405)PPR;RLS(0.999)PS(0.555)AS(0.445)PPR;RLS(0.999)PS(0.93)AS(0.071)PPR ;; 57.52 0.016383 12479499000 380157 606486 618104 330763 632811 592080 587078 720075 509068 454975 TRUE FALSE FALSE 464721.6131 677409.262 846766.3911 348831.7452 569806.1149 623080.3933 461643.9893 543475.4772 611233.2782 341558.1057 1.360593133 1.983291424 2.479128374 1.021295467 1.668255285 1.824229561 1.351582591 1.591165509 1.789544057 1 18.3817715 -11.58942672 0.199966938 9.60E-13 1.824727404 0.21991942 0.377226689 72.65702415 1.712206458 33.60647807 1.019185803 2.57E-12 11.58942672 1.824727404 RLS(ph)PS(ph)ASPPR ddPTM_HeLa_A486_30min_R1 1 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RLS(0.999)PS(0.555)AS(0.445)PPR 49.31 0.022523 8465200000 193520 226010 237520 62399 267260 178010 202460 252920 190680 194740 TRUE FALSE FALSE 179955.2473 208100.1445 329494.105 145268.0255 233737.7587 156048.9361 151802.3666 195335.6372 207208.2959 145975.8365 1.232774216 1.425579394 2.257182511 0.995151177 1.601208559 1.069005254 1.039914347 1.33813679 1.419469831 1 17.15537005 RLS(ph)PSAS(ph)PPR ddPTM_HeLa_A485_30min_R1 5 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RLS(1)PS(0.01)AS(0.99)PPR;RLS(0.992)PS(0.009)AS(0.999)PPR;RLS(0.999)PS(0.001)AS(1)PPR;RLS(0.998)PS(0.397)AS(0.605)PPR;RLS(0.997)PS(0.214)AS(0.788)PPR ;;;; 119.73 0.00012547 14433180000 1602560 2410820 2676030 1749340 2721820 2444620 2718180 3202750 2310220 2305840 TRUE FALSE FALSE 1959043.943 2692744.428 3666004.856 1844902.015 2450826.044 2572616.523 2137418.638 2417270.541 2773859.963 1731036.524 1.131717278 1.555567656 2.117809073 1.065778792 1.415814173 1.486171139 1.234762299 1.396429542 1.602427173 1 20.72320473 RLS(ph)PSAS(ph)PPR ddPTM_HeLa_A486_30min_R1 5 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RLS(0.981)PS(0.057)AS(0.962)PPR;RLS(0.978)PS(0.032)AS(0.99)PPR;RLS(0.967)PS(0.061)AS(0.972)PPR;RLS(0.997)PS(0.356)AS(0.647)PPR;RLS(0.999)PS(0.007)AS(0.994)PPR ;;;; 79.337 0.0035809 14662300000 2049790 2569320 2368040 780143 3013870 2142850 2512310 2663050 2100130 2279650 TRUE FALSE FALSE 1906110.306 2365717.726 3285008.506 1816212.33 2635842.321 1878486.954 1883703.465 2056731.649 2282170.959 1708810.802 1.115460122 1.384423438 1.922394511 1.062851621 1.542500971 1.099294873 1.102347588 1.203604078 1.335531679 1 20.70456124 -6.271295236 24.63109981 1.158017885 1.4140312 0.2294122 0.235242991 914.3508008 2285077.057 0.082307103 0.073461811 5.35E-07 6.271295236 0.256013314 RLS(ph)QPAGGLLDSITNIFGR ddPTM_HeLa_A485_30min_R1 2 RLSQPAGGLLDSITNIFGR 19 1 Q676U5-3;Q676U5;Q676U5-4 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 RLS(1)QPAGGLLDSITNIFGR;RLS(1)QPAGGLLDSITNIFGR ; 163.74 1.32E-12 212350000 47105 54602 59842 46525 67150 52691 62840 71481 48589 59883 TRUE FALSE FALSE 57583.34474 60987.22893 81980.04603 49066.54294 60464.31022 55449.81928 49413.72064 53950.17267 58340.36662 44955.27016 1.280903096 1.356620229 1.823591444 1.091452521 1.344988252 1.233444245 1.099175257 1.200085607 1.297742543 1 15.45620263 -5.309526941 24.9999961 1.194931584 1.473997961 0.423012692 0.163018843 389.1886916 202332.484 0.045480688 0.067458916 4.90E-06 5.309526941 0.279066376 RLS(ph)QPAGGLLDSITNIFGR ddPTM_HeLa_A486_30min_R1 2 RLSQPAGGLLDSITNIFGR 19 1 Q676U5-3;Q676U5;Q676U5-4 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 RLS(1)QPAGGLLDSITNIFGR;RLS(1)QPAGGLLDSITNIFGR ; 217.68 7.84E-35 236850000 73283 76369 75125 33753 98397 79039 81694 91416 63844 82198 TRUE FALSE FALSE 68146.24013 70317.24231 104215.4119 78578.68978 86055.13074 69287.97179 61253.29713 70602.5724 69378.04932 61615.08578 1.105999274 1.141234187 1.691394414 1.275315757 1.396656836 1.124529341 0.994128246 1.145865035 1.12599128 1 15.910996 -6.368297886 5.069409831 1.076761302 1.329372031 0.380732205 0.156319416 0.264221253 10.28268781 0.058560498 0.051347923 4.28E-07 6.368297886 0.252610728 RLS(ph)QPESAEK ddPTM_HeLa_A485_30min_R1 8 RLSQPESAEK 10 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK ;;;;;;; 172.1 1.26E-07 20150740000 10011841 10338714 8039868 11483946 10945760 9893910 13882360 13239670 7890417 12157030 TRUE FALSE FALSE 12238940.49 11547736.67 11014149.74 12111284.89 9855961.702 10411939.83 10916280.38 9992620.174 9473951.317 9126506.155 1.341032404 1.265296541 1.206830911 1.327045058 1.079927141 1.140846196 1.196107272 1.094900941 1.038069898 1 23.12163124 -3.294482744 0.15559455 0.942608742 1.811108391 0.739925826 0.057229377 16.96862373 0.332453494 0.225482835 3.02421789 0.000507595 3.294482744 0.868499649 RLS(ph)QPESAEK ddPTM_HeLa_A486_30min_R1 6 RLSQPESAEK 10 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(1)QPESAEK ;;;;; 176.98 2.96E-08 18201650000 11556490 10797030 6440400 4132290 10444520 10103620 12820190 12180700 8274210 12849550 TRUE FALSE FALSE 10746439.73 9941434.021 8934295.36 9620179.954 9134470.91 8857138.09 9612442.864 9407420.513 8991425.185 9631939.043 1.11570886 1.032132157 0.927569757 0.998779157 0.948352234 0.919559193 0.997975882 0.976690204 0.933501047 1 23.19939483 -4.462244409 3.071725966 0.962553715 1.114933925 0.7255368 0.029419466 0.137831114 2.311549367 0.00743802 0.039411866 3.45E-05 4.462244409 0.15238021 RLS(ph)QRPTPEELEQR ddPTM_HeLa_A485_30min_R1 3 RLSQRPTPEELEQR 14 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 RLS(0.917)QRPT(0.083)PEELEQR;RLS(0.987)QRPT(0.013)PEELEQR;RLS(1)QRPTPEELEQR ;; 183.74 9.24E-18 1541480000 421729 467027 469200 357563 540265 461229 594446 645470 510986 566214 TRUE FALSE FALSE 515541.1611 521641.7451 642776.605 377095.7613 486474.3196 485378.2372 467437.7559 487167.4704 613536.2032 425067.2702 1.212846053 1.227198097 1.51217619 0.887143725 1.144464309 1.1418857 1.099679483 1.146094994 1.443386132 1 18.69733165 -5.253704495 24.99981929 1.130003645 1.308385884 0.252375964 0.152600494 928.2844067 3000290.554 0.04149289 0.070131462 5.58E-06 5.253704495 0.178382239 RLS(ph)QRPTPEELEQR ddPTM_HeLa_A486_30min_R1 3 RLSQRPTPEELEQR 14 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 RLS(0.994)QRPT(0.006)PEELEQR;RLS(0.999)QRPT(0.001)PEELEQR;RLS(1)QRPTPEELEQR ;; 148.26 4.88E-08 3242400000 581450 678060 593210 245985 731650 633010 826860 913730 558240 670250 TRUE FALSE FALSE 540693.3576 624328.0561 822916.7987 572665.5114 639879.6346 554915.6622 619970.8824 705693.6256 606628.6927 502415.0374 1.076188644 1.242654001 1.63792231 1.13982558 1.273607649 1.104496524 1.233981542 1.404602914 1.20742543 1 18.93852012 RLS(ph)QRPTTEELEQR ddPTM_HeLa_A485_30min_R1 4 RLSQRPTTEELEQR 14 2 J3KP75;O75167-5;O75167-2;O75167;O75167-4 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 RLS(0.999)QRPT(0.001)TEELEQR;RLS(0.999)QRPT(0.001)TEELEQR;RLS(1)QRPTTEELEQR;RLS(1)QRPTTEELEQR ;;; 163.53 4.97E-12 1398900000 519120 765870 733270 522257 801180 679340 785060 885160 671140 770870 TRUE FALSE FALSE 634596.4531 855431.8343 1004537.087 550786.5775 721411.7061 714909.1919 617325.5176 668073.1221 805831.6419 578706.2958 1.096577759 1.478179589 1.735832311 0.951754943 1.246593844 1.23535755 1.066733716 1.154425184 1.39247084 1 19.14247181 -5.272489099 24.99169096 1.160213282 1.440994874 0.328871591 0.18758518 838.0092675 1895364.912 0.052622072 0.078859227 5.34E-06 5.272489099 0.280781592 RLS(ph)QRPTTEELEQR ddPTM_HeLa_A486_30min_R1 2 RLSQRPTTEELEQR 14 2 J3KP75;O75167-5;O75167-2;O75167;O75167-4 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 RLS(1)QRPTTEELEQR;RLS(0.999)QRPTTEELEQR ; 146.15 5.77E-08 1259330000 416530 464430 450570 170939 577100 446170 540000 525550 475110 473320 TRUE FALSE FALSE 387333.398 427626.8754 625042.7707 397954.6308 504714.7368 391126.0817 404886.2885 405893.7377 516292.9173 354797.5912 1.091702445 1.205269951 1.761688315 1.12163848 1.422542738 1.102392157 1.141175415 1.144014919 1.455175937 1 18.43663669 -6.266401616 24.93154799 1.175841603 1.327617918 0.118230238 0.206648967 975.1353321 4899312.603 0.071651372 0.065135891 5.41E-07 6.266401616 0.151776315 RLS(ph)QSDEDVIR ddPTM_HeLa_A485_30min_R1 4 RLSQSDEDVIR 11 1 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 0 RLS(1)QSDEDVIR;RLS(1)QSDEDVIR;RLS(0.986)QS(0.014)DEDVIR;RLS(1)QSDEDVIR ;;; 220.85 4.26E-18 2302530000 864964 1219415 1236862 878938 1433660 1113715 1294450 1439309 1123214 1188415 TRUE FALSE FALSE 1057372.258 1362014.977 1694428.724 926952.1574 1290919.777 1172027.395 1017880.183 1086316.211 1348632.747 892165.0117 1.185175661 1.526640206 1.899232431 1.038991829 1.446951808 1.313689037 1.140910223 1.217618038 1.511640481 1 19.76695104 -5.281638463 24.98624318 1.25535724 1.535978611 0.275224012 0.220780262 1085.840798 1343181.228 0.061636823 0.091548556 5.23E-06 5.281638463 0.280621371 RLS(ph)QSDEDVIR ddPTM_HeLa_A486_30min_R1 3 RLSQSDEDVIR 11 1 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 0 RLS(0.998)QS(0.002)DEDVIR;RLS(0.986)QS(0.014)DEDVIR;RLS(0.998)QS(0.002)DEDVIR ;; 201.3 6.59E-15 1844440000 1205750 1298800 1209030 442281 1620000 1125250 1279130 1261980 1011680 1108450 TRUE FALSE FALSE 1121233.151 1195878.358 1677198.795 1029652.52 1416804.494 986428.0957 959078.1447 974654.7028 1099373.237 830886.9052 1.349441355 1.439279342 2.018564481 1.239221022 1.705171288 1.187198991 1.154282416 1.173029322 1.323132222 1 19.66429259 -6.278918285 22.94078208 1.177514908 1.552894268 0.450563147 0.21121056 270.8926882 355540.211 0.072711826 0.06432308 5.26E-07 6.278918285 0.375379361 RLS(ph)S(ph)GKADGHVK ddPTM_HeLa_A485_30min_R1 2 RLSSGKADGHVK 12 2 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7 E7EPJ7 TRIO Triple functional domain protein 2 0 RLS(1)S(1)GKADGHVK;RLS(1)S(1)GKADGHVK ; 55.864 0.025348 1146120000 702780 619840 570090 1134260 1050590 857200 1289610 1280110 797040 1826440 TRUE FALSE FALSE 859110.9864 692324.8961 780990.0144 1196221.752 945989.5708 902081.6665 1014074.288 966161.0154 956998.6171 1371142.121 0.626565965 0.504925701 0.569590856 0.872427251 0.689928167 0.657905299 0.739583645 0.704639585 0.697957274 1 20.38694669 -14 0.108343338 2.007067984 0.487963812 0.591021424 0.086570184 131.2918242 0.947882601 29.65411529 1.235256668 1.00E-14 14 -1.519104172 RLS(ph)S(ph)LRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 3 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RLS(1)S(1)LRAS(0.849)T(0.134)S(0.017)K;RLS(1)S(1)LRAS(0.521)T(0.425)S(0.054)K;RLS(1)S(1)LRAS(0.601)T(0.358)S(0.041)K ;; 83.253 0.0052582 11415710000 3267510 2972260 1714410 2799190 2302980 2117830 2678270 2334660 1428420 2808730 TRUE FALSE FALSE 3994356.327 3319839.952 2348641.602 2952102.662 2073687.225 2228716.304 2106035.735 1762080.974 1715090.792 2108565.302 1.894347936 1.574454416 1.113857655 1.400052756 0.983458859 1.056982348 0.998800337 0.835677687 0.813392305 1 21.00783027 -1 0.373974246 0.875364251 15.34326477 0.866242022 0.120689362 21.22411258 0.292366227 0.092367631 221.3292054 0.1 1 14.46790052 RLS(ph)S(ph)LRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 2 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RLS(1)S(1)LRAS(0.515)T(0.433)S(0.052)K;RLS(1)S(1)LRAS(0.856)T(0.125)S(0.019)K ; 94.01 0.0023144 7342300000 2193980 2192920 1192350 906630 1621850 1936540 2212870 1864920 1364110 2631880 TRUE FALSE FALSE 2040193.332 2019145.033 1654059.852 2110680.459 1418422.45 1697629.384 1659186.521 1440318.427 1482352.153 1972840.117 1.03414023 1.023471195 0.83841556 1.069868987 0.718974861 0.860500235 0.841014184 0.73007357 0.75137977 1 20.91184261 -5.761270803 24.99999998 0.806870792 0.982826762 0.442894686 0.09526783 4.157543664 616486.0859 0.027930882 0.033807086 1.73E-06 5.761270803 0.17595597 RLS(ph)S(ph)LRAS(ph)TSKSESSQK ddPTM_HeLa_A485_30min_R1 1 RLSSLRASTSKSESSQK 17 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RLS(0.999)S(0.999)LRAS(0.713)T(0.111)S(0.103)KS(0.023)ES(0.027)S(0.025)QK 51.234 0.03308 401940000 174410 133450 131530 285250 383100 190580 394260 456710 129300 376360 TRUE FALSE FALSE 213206.9028 149055.8166 180188.4204 300832.4852 344957.2189 200558.4741 310023.1302 344701.1564 155249.324 282540.3784 0.754606842 0.527555805 0.637743962 1.064741567 1.220912992 0.709840042 1.097270174 1.220006706 0.549476591 1 18.10809754 -5.253127979 23.51016078 0.993115588 0.628727472 0.363867198 0.205577314 277.6630189 785409.9159 0.054686025 0.092530533 5.58E-06 5.253127979 -0.364388116 RLS(ph)S(ph)LRAS(ph)TSKSESSQK ddPTM_HeLa_A486_30min_R1 4 RLSSLRASTSKSESSQK 17 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RLS(1)S(1)LRAS(0.375)T(0.328)S(0.288)KS(0.005)ES(0.002)S(0.002)QK;RLS(0.997)S(0.986)LRAS(0.333)T(0.284)S(0.285)KS(0.108)ES(0.006)S(0.002)QK;RLS(1)S(1)LRAS(0.752)T(0.122)S(0.109)KS(0.005)ES(0.006)S(0.006)QK;RLS(1)S(0.999)LRAS(0.438)T(0.279)S(0.241)KS(0.023)ES(0.01)S(0.011)QK ;;; 89.946 0.00067633 1320560000 1137760 926200 730160 1200950 2001190 1382650 2370130 2446900 669850 1461730 TRUE FALSE FALSE 1058008.899 852804.5388 1012897.506 2795872.293 1750182.09 1212072.701 1777098.405 1889794.285 727913.1373 1095703.294 0.965597991 0.778317035 0.924426815 2.55166915 1.597313889 1.106205218 1.621879222 1.724731774 0.664334169 1 20.06342575 -5.04036083 24.99442576 1.512485666 0.866809358 0.229203908 0.480496609 654.1022445 405068.0775 0.130256121 0.225650751 9.11E-06 5.04036083 -0.645676308 RLS(ph)S(ph)LRAST(ph)SK ddPTM_HeLa_A486_30min_R1 1 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RLS(1)S(1)LRAS(0.123)T(0.788)S(0.089)K 79.013 0.0092347 4698800000 1715900 1668000 856100 672100 1254600 1534000 1774400 1434200 999450 2041800 TRUE FALSE FALSE 1595624.271 1535821.605 1187604.847 1564682.766 1097236.369 1344750.677 1330426.352 1107663.968 1086083.131 1530519.99 1.042537361 1.003463931 0.775948602 1.022321026 0.716904305 0.878623399 0.869264277 0.723717413 0.709617083 1 20.54559046 -3.678775167 0.600656021 0.811420567 1.43386468 0.289165471 0.108948556 7.872906691 1.300323385 0.050399727 3.952758057 0.00020952 3.678775167 0.622444113 RLS(ph)S(ph)SESPQRDPPPPPPPPPLLR ddPTM_HeLa_A485_30min_R1 2 RLSSSESPQRDPPPPPPPPPLLR 23 2 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 2 0 RLS(0.502)S(0.502)S(0.502)ES(0.495)PQRDPPPPPPPPPLLR;RLS(0.517)S(0.558)S(0.548)ES(0.376)PQRDPPPPPPPPPLLR ; 115.45 7.61E-05 990660000 417770 566600 623420 474370 703740 594110 652420 671600 521640 596660 TRUE FALSE FALSE 510701.4952 632858.9412 854049.0007 500283.6319 633673.1746 625216.6809 513025.1372 506889.047 626328.3632 447923.6427 1.140153023 1.412872376 1.906684352 1.1168949 1.414690171 1.395810851 1.145340608 1.131641643 1.398292708 1 18.77289329 -6.751916431 19.44080192 1.179788917 1.409658115 0.202973574 0.221173822 22.29059227 45506.45257 0.086396642 0.065556763 1.77E-07 6.751916431 0.229869198 RLS(ph)S(ph)SESPQRDPPPPPPPPPLLR ddPTM_HeLa_A486_30min_R1 1 RLSSSESPQRDPPPPPPPPPLLR 23 2 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 2 0 RLS(0.536)S(0.536)S(0.536)ES(0.391)PQRDPPPPPPPPPLLR 116.39 6.69E-05 309250000 177650 222420 199150 56945 244770 171000 215260 197870 173230 204380 TRUE FALSE FALSE 165197.6524 204794.6292 276266.2134 132570.8378 214068.6642 149903.7586 161399.6712 152819.3205 188245.7159 153201.9177 1.07830016 1.336762831 1.803281692 0.865334063 1.39729755 0.978471816 1.053509471 0.99750266 1.228742556 1 17.22507483 -5.284977267 24.99482826 1.082889844 1.399179852 0.332029204 0.215300232 904.0302539 959985.6434 0.059833961 0.088804017 5.19E-06 5.284977267 0.316290008 RLS(ph)SASTGKPPLSVEDDFEK ddPTM_HeLa_A485_30min_R1 2 RLSSASTGKPPLSVEDDFEK 20 2 O75152;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 RLS(0.992)S(0.008)ASTGKPPLSVEDDFEK;RLS(0.981)S(0.019)ASTGKPPLSVEDDFEK ; 323.41 9.68E-103 1587730000 1513220 1022590 657830 1986150 1259660 1150450 1713290 1286760 873560 2114100 TRUE FALSE FALSE 1849830.568 1142173.005 901188.6916 2094648.345 1134243.827 1210685.783 1347231.595 971180.0924 1048875.479 1587093.777 1.165545852 0.719663212 0.567823215 1.319801246 0.714667176 0.762831914 0.848867039 0.611923572 0.660878074 1 20.59795595 RLS(ph)SASTGKPPLSVEDDFEK ddPTM_HeLa_A486_30min_R1 1 RLSSASTGKPPLSVEDDFEK 20 2 O75152;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 RLS(0.973)S(0.027)ASTGKPPLSVEDDFEK 214.16 1.16E-27 769430000 344340 278550 115370 131820 196750 312410 321990 320610 204100 428680 TRUE FALSE FALSE 320203.5442 256476.6835 160044.3537 306883.6218 172071.7804 273868.0306 241424.6963 247614.1019 221791.5523 321335.7378 0.996476602 0.798157981 0.498059615 0.955024872 0.535489086 0.852280025 0.751316047 0.770577539 0.690217509 1 18.29372192 -9.538201228 6.482346202 1 0.755991264 0.183431408 0.15106551 182384388.9 71.6955321 0.316684263 0.034553086 2.90E-10 9.538201228 -0.244008736 RLS(ph)SGKADGHVK ddPTM_HeLa_A485_30min_R1 1 RLSSGKADGHVK 12 2 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7 E7EPJ7 TRIO Triple functional domain protein 1 0 RLS(0.926)S(0.074)GKADGHVK 74.428 0.0042859 348560000 121050 257360 146560 96524 365880 430480 547390 1122900 176910 201350 TRUE FALSE FALSE 147977.1549 287456.0133 200778.6429 101796.8617 329451.7025 453019.2672 430435.6547 847507.0144 212414.2143 151157.1506 0.97896232 1.901703043 1.328277505 0.67345052 2.179531046 2.997008514 2.847603657 5.606794063 1.405254158 1 17.2056897 -6.048081857 3.270269578 3.059969085 1.278510802 0.251803756 1.201241144 0.299880929 6.435184924 0.39688589 0.416900051 8.95E-07 6.048081857 -1.781458283 RLS(ph)SLRAST(ph)SK ddPTM_HeLa_A486_30min_R1 1 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.723)S(0.28)LRAS(0.193)T(0.74)S(0.065)K 64.298 0.01758 272130000 1525700 1225200 556200 462720 948960 934340 1087900 1039200 650540 1450500 TRUE FALSE FALSE 1418756.309 1128110.69 771575.5356 1077235.545 829932.5881 819070.6305 815695.9134 802596.8456 706929.331 1087285.359 1.304861044 1.037547945 0.709634807 0.990756967 0.763307058 0.753317079 0.750213278 0.738165781 0.650178286 1 20.0522992 -4.463608884 2.52398917 0.787118311 1.325875591 0.679742147 0.110233208 0.191796692 2.022981068 0.028489413 0.181010806 3.44E-05 4.463608884 0.53875728 RLS(ph)SLRAST(ph)SKSESSQK ddPTM_HeLa_A485_30min_R1 1 RLSSLRASTSKSESSQK 17 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.886)S(0.114)LRAS(0.016)T(0.759)S(0.097)KS(0.125)ES(0.002)S(0.002)QK 152.34 2.65E-07 2871100000 550660 712480 635610 829690 1986900 1343600 2627900 4344100 793510 1377000 TRUE FALSE FALSE 673152.4172 795798.3382 870748.5889 875013.8638 1789077.26 1413948.818 2066427.697 3278702.664 952760.1785 1033739.242 0.651182029 0.769825026 0.842329046 0.84645511 1.730685251 1.367800274 1.998983509 3.171692175 0.921663936 1 19.97944088 -5.830402533 1.42863711 1.884491548 0.713721177 0.334234668 0.606396234 0.414746921 1.765312892 0.232590512 0.302845971 1.48E-06 5.830402533 -1.170770372 RLS(ph)SLRASTSK ddPTM_HeLa_A485_30min_R1 1 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 0 RLS(0.493)S(0.493)LRAS(0.014)T(0.001)SK 78.505 0.0057534 660220000 326090 625590 356800 261160 586400 619480 719800 1206700 432400 497610 TRUE FALSE FALSE 398627.5955 698747.3086 488795.1677 275426.5095 528015.957 651915.0149 566008.8498 910754.933 519178.7138 373564.9848 1.067090364 1.87048395 1.308460877 0.737292093 1.413451417 1.745118096 1.515154987 2.438009369 1.389794908 1 18.51099971 -6.132327832 4.732250249 1.699108543 1.272235966 0.125949923 0.431107691 0.415194869 14.19758407 0.144016586 0.144677789 7.37E-07 6.132327832 -0.426872577 RLS(ph)SQFENSVYKGDDDDEDVIILEENSTPKPAVDHDIDMK ddPTM_HeLa_A486_30min_R1 1 RLSSQFENSVYKGDDDDEDVIILEENSTPKPAVDHDIDMK 40 3 Q14149 Q14149 MORC3 MORC family CW-type zinc finger protein 3 1 0 RLS(0.254)S(0.254)QFENS(0.254)VY(0.239)KGDDDDEDVIILEENSTPKPAVDHDIDMK 66.116 0.0030027 38636000 23900 21811 7234.2 18255 23074 24209 38680 36962 16367 41931 TRUE FALSE FALSE 22224.73342 20082.61693 10035.47598 42498.56256 20179.84376 21222.33972 29001.85488 28546.55947 17785.70474 31431.20467 0.707091365 0.638938823 0.319283848 1.352113703 0.642032145 0.675199692 0.922708983 0.908223524 0.565861376 1 14.93990995 -5.207382117 24.99999867 0.847777252 0.563488375 0.277172884 0.228984173 454.974665 210412.3504 0.060786131 0.105284611 6.20E-06 5.207382117 -0.284288877 RLS(ph)SS(ph)SATLLNSPDR ddPTM_HeLa_A485_30min_R1 2 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 2 0 RLS(0.993)S(0.094)S(0.473)S(0.36)AT(0.075)LLNS(0.005)PDR;RLS(0.726)S(0.314)S(0.501)S(0.257)AT(0.172)LLNS(0.03)PDR ; 150.28 2.52E-08 377640000 366500 465600 447620 415400 605480 457890 468410 547530 445130 555540 TRUE FALSE FALSE 448026.6606 520047.8698 613213.265 438092.2502 545196.2852 481864.4124 368330.3769 413247.409 534463.508 417054.102 1.074265086 1.246955413 1.470344644 1.05044465 1.30725554 1.155400247 0.883171692 0.990872424 1.281520804 1 18.66987502 -6.530307307 24.78299693 1.035438469 1.233909834 0.280694461 0.144076654 211.6851947 706210.1244 0.05474296 0.042496731 2.95E-07 6.530307307 0.198471365 RLS(ph)SSES(ph)PQRDPPPPPPPPPLLR ddPTM_HeLa_A486_30min_R1 1 RLSSSESPQRDPPPPPPPPPLLR 23 2 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 2 0 RLS(0.368)S(0.368)S(0.368)ES(0.897)PQRDPPPPPPPPPLLR 123.43 2.68E-06 325070000 168730 199890 168740 53638 239530 187310 164270 191030 160480 201980 TRUE FALSE FALSE 156902.8983 184049.9884 234080.647 124871.9747 209485.9139 164201.5966 123167.9085 147536.6392 174390.5356 151402.8933 1.036326948 1.215630589 1.546077766 0.824766106 1.38363217 1.084534073 0.81351093 0.974463803 1.151830931 1 17.20803325 -6.52092636 24.90339282 0.977994682 1.203697079 0.215531697 0.194708929 110.8652799 1414168.709 0.071952853 0.056633906 3.01E-07 6.52092636 0.225702397 RLS(ph)SSESPQRDPPPPPPPPPLLR ddPTM_HeLa_A485_30min_R1 3 RLSSSESPQRDPPPPPPPPPLLR 23 2 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 1 0 RLS(0.792)S(0.103)S(0.103)ES(0.001)PQRDPPPPPPPPPLLR;RLS(0.265)S(0.265)S(0.265)ES(0.204)PQRDPPPPPPPPPLLR;RLS(0.25)S(0.25)S(0.25)ES(0.25)PQRDPPPPPPPPPLLR ;; 130.05 1.17E-06 551870000 203378 346684 322948 195843 363604 350194 378250 473500 286428 304763 TRUE FALSE FALSE 248618.7345 387225.6781 442419.9042 206541.4072 327402.3091 368529.6163 297433.7975 357373.3826 343911.4723 228791.1928 1.086662172 1.69248507 1.933727862 0.90275069 1.431009232 1.610768368 1.300022933 1.562006728 1.503167443 1 17.80367199 -10.16221171 4.582394886 0.999944537 1.455899187 0.184979001 0.280890875 0.000187793 3.43E-05 0.269518229 0.065358337 6.88E-11 10.16221171 0.45595465 RLS(ph)SSLNPSK ddPTM_HeLa_A486_30min_R1 1 RLSSSLNPSK 10 1 A0A590UJ01;Q13535-2;Q13535-3;Q13535 A0A590UJ01 ATR Serine/threonine-protein kinase ATR 1 0 RLS(0.713)S(0.177)S(0.11)LNPSK 71.531 0.006262 0 296130 305730 218060 112870 301640 294830 319690 347110 252840 348110 TRUE FALSE FALSE 275372.8162 281502.8414 302498.6718 262767.0641 263805.4985 258456.8722 239700.1807 268080.6304 274756.3748 260940.9902 1.055306857 1.078798855 1.159260841 1.006998034 1.01097761 0.990480154 0.918599184 1.027361129 1.052944478 1 17.99336406 -5.383358625 7.425028432 0.998015969 1.09561546 0.545040787 0.040485231 0.207001505 11.6713057 0.012039316 0.017892952 4.14E-06 5.383358625 0.097599491 RLS(ph)SSS(ph)ATLLNSPDR ddPTM_HeLa_A486_30min_R1 1 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 2 0 RLS(0.967)S(0.032)S(0.003)S(0.61)AT(0.387)LLNS(0.001)PDR 108.34 3.73E-05 0 161570 160980 136710 52721 179740 146160 171650 165150 143540 161410 TRUE FALSE FALSE 150244.7773 148223.3585 189647.7732 122737.1524 157195.3332 128128.2652 128701.3545 127548.9502 155982.1628 120991.8854 1.241775652 1.225068591 1.567442086 1.014424661 1.299222115 1.058982301 1.063718894 1.054194253 1.28919524 1 16.88455077 -5.286153478 24.99850274 1.117305416 1.332792845 0.39769625 0.131221149 788.3750421 797445.6854 0.036119853 0.053601614 5.17E-06 5.286153478 0.215487429 RLS(ph)SSSATLLNS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 2 0 RLS(0.847)S(0.065)S(0.078)S(0.011)AT(0.036)LLNS(0.964)PDR 177.22 2.38E-13 175420000 164290 185190 192850 179840 240570 181810 199520 216920 180250 226330 TRUE FALSE FALSE 200835.7437 206846.3596 264193.2402 189664.2038 216618.0061 191329.2905 156890.9221 163720.0299 216424.5216 169910.0963 1.182011829 1.217387101 1.554900185 1.116262117 1.274897789 1.126061927 0.9233761 0.963568578 1.273759043 1 17.37441206 -6.395592971 3.33081109 1.035557353 1.274649463 0.37719308 0.138726221 0.273046537 5.644130607 0.05291295 0.045519319 4.02E-07 6.395592971 0.23909211 RLS(ph)SSSATLLNS(ph)PDR ddPTM_HeLa_A486_30min_R1 3 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 2 0 RLS(0.955)S(0.044)S(0.001)S(0.001)AT(0.012)LLNS(0.987)PDR;RLS(0.865)S(0.072)S(0.036)S(0.014)AT(0.019)LLNS(0.994)PDR;RLS(0.933)S(0.066)S(0.005)S(0.057)AT(0.067)LLNS(0.872)PDR ;; 240.94 1.58E-41 1600510000 1611330 1675280 1437860 508383 1835030 1476030 1693680 1745250 1449470 1711700 TRUE FALSE FALSE 1498384.088 1542524.712 1994637.899 1183541.316 1604863.426 1293932.426 1269903.35 1347894.674 1575111.227 1283079.179 1.167803291 1.202205396 1.554571169 0.922422666 1.250790639 1.008458751 0.989731087 1.050515585 1.227602515 1 20.29117877 -5.279776733 24.99997856 1.068669165 1.297594546 0.400113412 0.13663803 831.0817125 1133041.863 0.037955955 0.056415526 5.25E-06 5.279776733 0.228925381 RLS(ph)SSSATLLNSPDR ddPTM_HeLa_A485_30min_R1 2 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 RLS(0.554)S(0.293)S(0.112)S(0.035)AT(0.006)LLNSPDR;RLS(0.756)S(0.168)S(0.038)S(0.038)ATLLNSPDR ; 101.17 0.00030869 585940000 129412 187397 187529 133285 202382 156387 184310 197571 164580 189091 TRUE FALSE FALSE 158199.2529 209311.449 256903.7808 140566.0221 182232.1375 164575.1815 144930.6628 149116.4025 197609.6964 141954.0937 1.114439527 1.474500971 1.809766624 0.990221687 1.283739924 1.159354952 1.020968533 1.050455106 1.392067613 1 17.11506493 -5.285403553 24.99981486 1.133539247 1.467062341 0.38091676 0.197447699 794.4732836 828805.6361 0.055658392 0.082599155 5.18E-06 5.285403553 0.333523093 RLS(ph)SSSATLLNSPDR ddPTM_HeLa_A486_30min_R1 2 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 RLS(0.944)S(0.051)S(0.003)S(0.001)ATLLNSPDR;RLS(0.38)S(0.38)S(0.224)S(0.016)ATLLNSPDR ; 158.38 2.31E-08 256042000 338127 331319 255372 118181 350233 316668 310640 340065 266581 376610 TRUE FALSE FALSE 314426.0434 305064.0758 354258.8775 275131.3405 306303.5113 277600.7218 232914.5864 262639.6231 289688.4557 282304.4047 1.113783697 1.080621027 1.254882572 0.97459103 1.08501145 0.983338259 0.825047653 0.930341924 1.026156344 1 18.10689211 -5.896008587 1.34456041 0.940805818 1.132722615 0.478032327 0.07954142 0.357998033 1.351212301 0.03293886 0.040855505 1.27E-06 5.896008587 0.191916796 RLS(ph)SSTVAISYSPDR ddPTM_HeLa_A485_30min_R1 3 RLSSSTVAISYSPDR 15 1 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RLS(0.9)S(0.049)S(0.049)T(0.002)VAISYSPDR;RLS(0.96)S(0.037)S(0.003)TVAISYSPDR;RLS(0.882)S(0.091)S(0.022)T(0.004)VAIS(0.001)YSPDR ;; 120.39 0.00019209 267928000 205661 321228 341105 172326 364217 273562 298963 361378 271623 213428 TRUE FALSE FALSE 251409.5799 358792.8203 467293.9341 181739.733 327954.2766 287885.2833 235087.1127 272749.4789 326135.2446 160224.3275 1.569109909 2.239315502 2.916498022 1.134283014 2.046844458 1.796763874 1.46723732 1.702297543 2.035491425 1 17.28973369 -5.271112743 24.99890425 1.648412365 2.241408609 0.303378144 0.442585379 866.3704354 2238963.173 0.122210392 0.183884443 5.36E-06 5.271112743 0.592996244 RLS(ph)STSLASGHSVR ddPTM_HeLa_A485_30min_R1 3 RLSSTSLASGHSVR 14 1 M0QZ82;Q9BZL6-2;Q9BZL6;Q9BZL6-3 M0QZ82 PRKD2 Serine/threonine-protein kinase D2 1 0 RLS(0.89)S(0.104)T(0.006)SLASGHSVR;RLS(0.665)S(0.317)T(0.015)S(0.004)LASGHSVR;RLS(0.922)S(0.072)T(0.006)SLASGHSVR ;; 171.85 1.82E-12 4337900000 786440 1259230 1481330 525010 1513430 1019490 1226190 1311400 1180090 965710 TRUE FALSE FALSE 961380.8648 1406485.995 2029335.61 553689.9669 1362747.595 1072868.92 964204.4894 989777.0938 1416923.239 724976.2696 1.326085977 1.940044183 2.799175222 0.763735297 1.879713382 1.479867638 1.329980759 1.365254472 1.954440853 1 19.46757425 -5.268542393 24.96640097 1.432241433 2.013596038 0.268044313 0.471071585 760.9993126 2674838.44 0.129746531 0.197048949 5.39E-06 5.268542393 0.581354606 RLS(ph)STSLASGHSVR ddPTM_HeLa_A486_30min_R1 2 RLSSTSLASGHSVR 14 1 M0QZ82;Q9BZL6-2;Q9BZL6;Q9BZL6-3 M0QZ82 PRKD2 Serine/threonine-protein kinase D2 1 0 RLS(0.924)S(0.073)T(0.003)SLASGHSVR;RLS(0.849)S(0.13)T(0.02)SLASGHSVR ; 197.05 6.12E-22 1905950000 655170 778620 723860 47955 919690 547270 693020 633850 655190 374970 TRUE FALSE FALSE 609245.9663 716919.3155 1004157.978 111641.6635 804333.9044 479753.3916 519619.066 489536.1918 711982.3967 281075.0714 2.167556032 2.550632869 3.572561497 0.39719518 2.861633729 1.706851445 1.84868428 1.741656382 2.533068455 1 18.10059598 -8.472374422 0.098336566 1.07E-11 3.362163742 0.162664227 0.795677902 44.39015713 2.005139801 39.85833456 25.36705818 3.37E-09 8.472374422 3.362163742 RLS(ph)TEHSSVSEYHPADGYAFSSNIYTR ddPTM_HeLa_A485_30min_R1 2 RLSTEHSSVSEYHPADGYAFSSNIYTR 27 1 A0A2R8Y4W2;A0A2R8YE63;Q12929-2;Q12929 A0A2R8Y4W2 EPS8 Epidermal growth factor receptor kinase substrate 8 1 0 RLS(0.679)T(0.318)EHS(0.002)SVSEYHPADGYAFSSNIYTR;RLS(0.711)T(0.286)EHS(0.001)S(0.001)VSEYHPADGYAFSSNIYTR ; 204.54 1.73E-28 2061560000 292625 637880 737840 142309 774930 357710 464550 501010 514710 330130 TRUE FALSE FALSE 357718.4217 712474.5172 1010797.72 150082.9803 697775.2483 376439.1425 365295.0975 378136.5119 618007.5758 247834.6666 1.443375241 2.87479765 4.07851627 0.605577026 2.815486864 1.518912377 1.473946734 1.525761174 2.493628451 1 17.91901848 -5.267250919 24.99991888 1.693085257 2.806486505 0.283383103 0.845627067 623.0267334 2680120.182 0.232003496 0.354851313 5.40E-06 5.267250919 1.113401248 RLS(ph)THSPFR ddPTM_HeLa_A485_30min_R1 6 RLSTHSPFR 9 1 A0A1B0GWG0;A0A2R8Y6D0;A0A2R8Y5C8;A0A2R8Y783;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6 A0A1B0GWG0;P11171 EPB41 Protein 4.1 1 0 RLS(0.883)T(0.117)HSPFR;RLS(0.695)T(0.305)HSPFR;RLS(0.5)T(0.5)HSPFR;RLS(0.961)T(0.039)HSPFR;RLS(0.925)T(0.075)HSPFR;RLS(0.5)T(0.5)HSPFR ;;;;; 144.28 6.22E-05 4987400000 792744 1034040 987030 711225 996450 934118 1099040 1209210 1002690 1067570 TRUE FALSE FALSE 969087.1679 1154961.983 1352173.471 750077.4208 897239.9393 983026.9741 864221.1257 912649.3515 1203920.686 801444.4462 1.209175723 1.441100489 1.687170555 0.935906942 1.119528551 1.226569076 1.078329421 1.1387556 1.502188569 1 19.61224299 -5.264858653 24.99999667 1.148625718 1.445344074 0.376402728 0.178488094 319.1516351 2333478.422 0.049943629 0.077610504 5.43E-06 5.264858653 0.296718356 RLS(ph)THSPFR ddPTM_HeLa_A486_30min_R1 5 RLSTHSPFR 9 1 A0A1B0GWG0;A0A2R8Y6D0;A0A2R8Y5C8;A0A2R8Y783;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6 A0A1B0GWG0;P11171 EPB41 Protein 4.1 1 0 RLS(0.5)T(0.5)HSPFR;RLS(0.983)T(0.017)HSPFR;RLS(0.972)T(0.028)HSPFR;RLS(0.972)T(0.028)HSPFR;RLS(0.626)T(0.374)HSPFR ;;;; 131.17 0.00013705 3692560000 998512 1138700 999990 338157 1232130 825194 1043940 1074520 869640 891291 TRUE FALSE FALSE 928521.4651 1048465.265 1387212.909 787246.5855 1077584.766 723389.9542 782735.1703 829875.2526 945021.0954 668105.9323 1.3897818 1.569309917 2.076336763 1.178325992 1.612895073 1.08274739 1.171573447 1.242131244 1.414477929 1 19.34971734 -5.849989449 1.520429794 1.206158565 1.634136328 0.366521757 0.240326195 0.427163574 2.049523578 0.090841728 0.114868418 1.41E-06 5.849989449 0.427977763 RLS(ph)TIDELDELFPSR ddPTM_HeLa_A485_30min_R1 2 RLSTIDELDELFPSR 15 1 Q8IW52 Q8IW52 SLITRK4 SLIT and NTRK-like protein 4 1 0 RLS(0.819)T(0.181)IDELDELFPSR;RLS(0.715)T(0.285)IDELDELFPSR ; 116.43 7.95E-05 43083000 56755 53692 47245 73612 51837 54893 71509 59944 60619 124879 TRUE FALSE FALSE 69379.95395 59970.81234 64722.89153 77633.23716 46675.92627 57767.1126 56230.51798 45242.64001 72784.67727 93748.96353 0.740061024 0.639695737 0.690385142 0.828097018 0.497882051 0.616189347 0.599798823 0.482593496 0.776378474 1 16.51651512 -8.008855227 23.52866469 1.000000009 0.637972719 0.570236113 0.097477773 125.2465747 332786.7163 0.096608612 0.024944236 9.80E-09 8.008855227 -0.362027289 RLS(ph)TIDELDELFPSR ddPTM_HeLa_A486_30min_R1 2 RLSTIDELDELFPSR 15 1 Q8IW52 Q8IW52 SLITRK4 SLIT and NTRK-like protein 4 1 0 RLS(0.965)T(0.035)IDELDELFPSR;RLS(0.791)T(0.209)IDELDELFPSR ; 169.85 2.09E-12 55482000 58653 65778 59426 23901 88023 71818 70422 69983 70015 73860 TRUE FALSE FALSE 54541.72758 60565.51172 82437.33868 55642.73589 76982.33456 62957.82535 52801.67075 54049.39862 76083.95657 55364.97525 0.985130533 1.093931885 1.488979961 1.005016902 1.390451891 1.137141759 0.953701695 0.976238107 1.374225424 1 15.75668597 -6.523948354 24.99730282 1.069969792 1.200302797 0.081736167 0.183033548 91.17121327 2130594.683 0.068518616 0.053518912 2.99E-07 6.523948354 0.130333005 RLS(ph)TIFEECDEELER ddPTM_HeLa_A485_30min_R1 3 RLSTIFEECDEELER 15 1 Q5T5P2;Q5T5P2-3;A0A0U1RRK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RLS(0.949)T(0.051)IFEECDEELER;RLS(0.951)T(0.049)IFEECDEELER;RLS(0.715)T(0.285)IFEECDEELER ;; 284.65 6.49E-59 261249000 41759.4 52422 62625 46021.7 71446 42343.4 66639 66464 60512 67770 TRUE FALSE FALSE 51048.63446 58552.29689 85792.59354 48535.74894 64332.58538 44560.43495 52401.03326 50163.59979 72656.20335 50876.18621 1.003389567 1.150878264 1.686301587 0.953997391 1.264493079 0.875860363 1.029971725 0.985993714 1.428098463 1 15.63470291 RLS(ph)TIFEECDEELER ddPTM_HeLa_A486_30min_R1 2 RLSTIFEECDEELER 15 1 Q5T5P2;Q5T5P2-3;A0A0U1RRK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RLS(0.749)T(0.251)IFEECDEELER;RLS(0.884)T(0.116)IFEECDEELER ; 81.788 0.0021398 270759000 25037.5 29393.8 25970.9 11846.4 37338 26837.2 34841.8 30426.2 27531.5 30577.1 TRUE FALSE FALSE 23282.50054 27064.52824 36027.528 27579.01788 32654.71988 23526.29912 26124.01312 23498.81846 29917.95259 22920.39514 1.015798393 1.180805482 1.571854577 1.203252288 1.424701437 1.026435146 1.139771499 1.025236185 1.30529829 1 14.4843443 -6.273735474 24.93769425 1.103451941 1.285841609 0.239067619 0.160210821 1145.078123 2322324.882 0.056563598 0.050249015 5.32E-07 6.273735474 0.182389668 RLS(ph)TPQR ddPTM_HeLa_A485_30min_R1 1 RLSTPQR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 RLS(0.813)T(0.187)PQR 87.149 0.0043825 53999000 22545 43992 69349 22836 43588 33466 37055 41434 52390 38230 TRUE FALSE FALSE 27560.05747 49136.48172 95004.08095 24083.47286 39248.22567 35218.22801 29137.89654 31272.24653 62904.19245 28699.96457 0.960281934 1.712074647 3.310250809 0.839146432 1.367535684 1.227117473 1.015258972 1.08962666 2.191786415 1 14.80876134 RLS(ph)TPQR ddPTM_HeLa_A486_30min_R1 1 RLSTPQR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 RLS(0.995)T(0.005)PQR 104.05 0.002133 34655000 14966 18605 15538 6193.7 23978 15903 17654 20785 16297 23662 TRUE FALSE FALSE 13916.96068 17130.67204 21554.72972 14419.24661 20970.45565 13941.04955 13236.78248 16052.70923 17709.63708 17736.88119 0.784634037 0.965822112 1.215249146 0.812952766 1.182307951 0.78599216 0.746285795 0.905046894 0.998463986 1 14.11446473 -6.305165097 24.99851214 0.872418728 0.993162771 0.108165417 0.147788287 975.1164779 557482.7859 0.051709215 0.045603434 4.95E-07 6.305165097 0.120744042 RLS(ph)VELTSSLFR ddPTM_HeLa_A485_30min_R1 4 RLSVELTSSLFR 12 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0;A0A2R8Y7Z0;A0A2R8YG06 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 RLS(1)VELTSSLFR;RLS(1)VELTSSLFR;RLS(1)VELTSSLFR;RLS(1)VELTSSLFR ;;; 208.49 1.33E-17 1850683000 233130 253505 185525 235458 207319 245310 259273 289321 225789 428051 TRUE FALSE FALSE 284988.9642 283150.2045 254158.4178 248320.4743 186677.5924 258154.0523 203877.2055 218364.5711 271102.7812 321345.7634 0.886860811 0.881138751 0.790918838 0.772751667 0.580924393 0.803352904 0.634448089 0.679531508 0.84364822 1 18.29376693 -4.928789396 2.17271248 0.735238099 0.890184047 0.140193295 0.111728017 0.476866213 4.437396593 0.030291393 0.084810285 1.18E-05 4.928789396 0.154945948 RLS(ph)VELTSSLFR ddPTM_HeLa_A486_30min_R1 4 RLSVELTSSLFR 12 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0;A0A2R8Y7Z0;A0A2R8YG06 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 RLS(1)VELTSSLFR;RLS(0.999)VELT(0.001)SSLFR;RLS(1)VELTSSLFR;RLS(1)VELTSSLFR ;;; 218.83 3.71E-23 1936251000 239735 252161 251569 92829 352475 261721 260794 269115 285971 316526 TRUE FALSE FALSE 222930.8145 232178.844 348983.2541 216110.6033 308264.2988 229432.524 195540.5828 207843.3892 310759.1965 237265.8294 0.939582472 0.978559975 1.470853409 0.910837451 1.299235965 0.96698511 0.824141358 0.875993774 1.309751165 1 17.85614482 RLSELLR ddPTM_HeLa_A485_30min_R1 2 RLSELLR 7 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ; ; 127.56 0.0041763 481430000 187905 295960 276660 168333 285240 272030 299450 318630 232930 213961 FALSE FALSE TRUE 229703.819 330569.9475 379008.0468 177528.6055 256840.5041 286273.0702 235470.0612 240485.4929 279676.9144 160624.4604 1.430067491 2.058029934 2.359591098 1.105240168 1.599012401 1.782250782 1.465966396 1.497190978 1.741185084 1 17.29333208 -11.36993101 0.146921113 1.39E-11 1.963440908 0.282643568 0.328245025 71.27589041 1.335790899 26.44789812 2.160411499 4.27E-12 11.36993101 1.963440908 RLSELLR ddPTM_HeLa_A486_30min_R1 1 RLSELLR 7 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 140.09 0.0036944 219930000 105400 112580 91904 36957 133830 88113 107830 115220 77800 111600 FALSE FALSE TRUE 98012.00429 103658.7508 127491.6901 86037.7637 117043.7935 77242.51393 80849.79349 88986.92123 84543.76664 83654.63361 1.171626724 1.239127426 1.524024248 1.028487724 1.399131028 0.923350095 0.966471192 1.063741689 1.010628617 1 16.35215783 -6.268630483 24.98298202 0.995174222 1.271046159 0.54820223 0.126920249 438.264454 1522592.121 0.043070469 0.038772922 5.39E-07 6.268630483 0.275871937 RLSES(ph)QLSFR ddPTM_HeLa_A486_30min_R1 1 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 RLS(0.241)ES(0.707)QLS(0.051)FR 70.563 0.036534 143890000 200540 218370 205170 80377 281930 187130 219980 226900 178420 214890 TRUE FALSE FALSE 186483.1816 201065.5659 284617.3186 187121.718 246567.7105 164043.8032 164938.6773 175239.8232 193885.5893 161080.1453 1.157704329 1.24823308 1.76692986 1.161668421 1.530714478 1.018398654 1.023954113 1.087904551 1.203659141 1 17.29741915 -6.273637918 24.9494847 1.069600488 1.37625455 0.427010602 0.177353379 748.3874793 1530660.85 0.061947525 0.055028237 5.33E-07 6.273637918 0.306654062 RLSFAVPFR ddPTM_HeLa_A485_30min_R1 2 RLSFAVPFR 9 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ; ; 163.38 3.23E-06 29549000 14998.9 21870.4 19690 12304.2 22051.1 17438.6 23509.7 29187 16580.8 19585.4 FALSE FALSE TRUE 18335.35356 24427.95303 26974.15037 12976.34729 19855.61506 18351.65813 18486.66054 22028.84249 19908.41447 14703.12022 1.247038267 1.661412861 1.834586806 0.882557382 1.350435469 1.248147186 1.257329074 1.498242696 1.354026504 1 13.84383473 -5.247498793 24.99910195 1.255265374 1.589052634 0.356326971 0.21551628 945.6092214 1695721.535 0.058538807 0.100720226 5.66E-06 5.247498793 0.333787261 RLSFAVPFR ddPTM_HeLa_A486_30min_R1 1 RLSFAVPFR 9 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 96.342 0.010353 15314000 5128.5 7268.4 5962.6 3246.9 7992.7 5816.6 7920 7107.1 5167.9 7626 FALSE FALSE TRUE 4769.018634 6692.425513 8271.478404 7558.947289 6990.181037 5099.007031 5938.332231 5488.968477 5615.857733 5716.399963 0.834269587 1.170741298 1.44697335 1.322326523 1.222829243 0.891996198 1.038823782 0.96021421 0.982411617 1 12.48089115 -6.248832751 23.57858831 0.976210968 1.218414546 0.356375345 0.149923039 414.0376341 774387.6363 0.052904672 0.052504174 5.64E-07 6.248832751 0.242203578 RLSFLVSYIASK ddPTM_HeLa_A485_30min_R1 1 RLSFLVSYIASK 12 1 A0A1B0GVU9;P47897;A0A0U1RQM8;A0A0U1RQU2;A0A0U1RRI9;A0A0U1RQE9;A0A0U1RQL2;C9J165;A0A0U1RQT0 A0A1B0GVU9 QARS Glutamine--tRNA ligase 0 0 96.591 0.0052542 14268000 37911 47409 36112 38459 48981 36360 56331 53265 27874 51131 FALSE FALSE TRUE 46344.17116 52953.07015 49471.33155 40559.91779 44104.27966 38263.75338 44295.42167 40201.67523 33468.05612 38384.9827 1.207351623 1.379525701 1.288819952 1.056661093 1.148998295 0.996841751 1.153977899 1.04732821 0.871904942 1 15.22825438 -5.258127841 4.783018941 1.047725205 1.303632677 0.648096804 0.085071042 0.116608544 7.832243452 0.023850972 0.039410946 5.52E-06 5.258127841 0.255907472 RLSKPPFQTNPS(ph)PEMVSK ddPTM_HeLa_A485_30min_R1 2 RLSKPPFQTNPSPEMVSK 18 2 H0Y7Y8;Q4LE39-4;Q4LE39-3;Q4LE39-2;Q4LE39 H0Y7Y8 ARID4B AT-rich interactive domain-containing protein 4B 1 0 RLSKPPFQTNPS(1)PEMVSK;RLSKPPFQT(0.006)NPS(0.994)PEMVSK ; 164.27 2.09E-12 685930000 635470 714130 459010 642860 821000 868440 1074230 1157640 620430 931650 TRUE FALSE FALSE 776828.1092 797641.2914 628816.9 677977.814 739258.3573 913910.1755 844711.9848 873726.9749 744944.6101 699406.8007 1.110695676 1.140454011 0.899071755 0.969361198 1.056979081 1.306693293 1.207754892 1.249240033 1.065109189 1 19.4157723 -6.050795111 12.21639116 1.183773159 1.026537871 0.278517512 0.103634158 1.712978432 410.6075946 0.034584469 0.034634304 8.90E-07 6.050795111 -0.157235288 RLSLMEQVS(ph)GVEAFLQASQPPDPHR ddPTM_HeLa_A485_30min_R1 1 RLSLMEQVSGVEAFLQASQPPDPHR 25 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RLS(0.409)LMEQVS(0.591)GVEAFLQASQPPDPHR 67.283 0.0067588 78609000 3013 3925.4 3857.5 2682.5 5922.4 5399.3 5362.6 4249.7 2802.7 4585.3 TRUE FALSE FALSE 3683.231455 4384.441384 5284.549774 2829.038183 5332.745061 5681.998999 4216.836702 3207.454412 3365.176182 3442.269096 1.070001023 1.27370675 1.535193684 0.821852709 1.549194706 1.650655088 1.225016576 0.931784913 0.977604042 1 11.74914417 -7.159138973 4.612922721 0.967304955 1.321013984 0.312120889 0.22933833 0.281659472 9.757341679 0.116525406 0.065010473 6.93E-08 7.159138973 0.353709029 RLSLMEQVS(ph)GVEAFLQASQPPDPHR ddPTM_HeLa_A486_30min_R1 2 RLSLMEQVSGVEAFLQASQPPDPHR 25 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RLS(0.261)LMEQVS(0.739)GVEAFLQASQPPDPHR;RLS(0.426)LMEQVS(0.573)GVEAFLQASQPPDPHR ; 93.776 0.0015457 116536000 38466 47189 39886 23845.3 51956 40816 44639 51284 38135 51531 TRUE FALSE FALSE 35769.73204 43449.57178 55330.92738 55513.06347 45439.19401 35780.53691 33469.85006 39607.75272 41440.5725 38627.30219 0.926022011 1.124840963 1.432430541 1.437145758 1.176349148 0.926301732 0.866481689 1.02538232 1.072831136 1 15.2373333 -6.148371374 4.816138015 0.973717038 1.243979803 0.402733212 0.147017618 0.246547593 8.815247577 0.054439983 0.054546508 7.11E-07 6.148371374 0.270262765 RLSLPGLLSQVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RLSLPGLLSQVSPR 14 1 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 0 RLSLPGLLSQVS(1)PR 127.37 1.48E-05 502220000 176270 272670 245800 172650 285030 261480 314940 376190 203630 227140 TRUE FALSE FALSE 215480.6534 304556.3846 336731.6486 182081.4323 256651.4124 275170.6885 247650.4962 283928.8127 244496.6732 170518.1782 1.263681419 1.78606403 1.974755138 1.067812442 1.505126404 1.61373228 1.452340735 1.665094101 1.433845211 1 17.37956602 -8.032693863 17.92001079 0.999999987 1.546393885 0.311510301 0.240639747 106.1574178 58188.20164 0.232963131 0.060150796 9.27E-09 8.032693863 0.546393897 RLSLPGLLSQVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RLSLPGLLSQVSPR 14 1 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 0 RLSLPGLLSQVS(1)PR;RLSLPGLLSQVS(1)PR ; 190.96 5.50E-18 860120000 520480 494220 487050 186968 695190 447660 545100 601160 388510 536080 TRUE FALSE FALSE 483997.0398 455056.2073 675648.8037 435270.9528 607992.7878 392432.2607 408710.2145 464288.9912 422186.3596 401842.0787 1.204445889 1.132425476 1.681378928 1.083189083 1.513014241 0.976583293 1.017091629 1.155401626 1.050627552 1 18.61626912 -6.278389426 24.9938705 1.048225337 1.318908583 0.405827826 0.171003871 878.6170969 1295570.119 0.058336448 0.051577017 5.27E-07 6.278389426 0.270683246 RLSPS(ph)AS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RLS(0.34)PS(0.698)AS(0.963)PPR 123.28 6.00E-05 1973000000 1059200 1643600 1680100 1096700 1830900 1520300 1809100 2017700 1600100 1406200 TRUE FALSE FALSE 1294815.386 1835804.723 2301638.905 1156609.944 1648609.167 1599900.557 1422571.006 1522855.911 1921225.393 1055660.219 1.226545589 1.73901099 2.180283829 1.095627099 1.561685415 1.515544991 1.34756523 1.442562563 1.819927812 1 20.00971412 -5.278466484 24.98715124 1.425670763 1.717653322 0.180986065 0.305646255 1444.274862 2119459.59 0.08496416 0.126387255 5.27E-06 5.278466484 0.291982559 RLSS(ph)LR ddPTM_HeLa_A485_30min_R1 4 RLSSLR 6 1 P62753;A2A3R5;Q9Y253-2;Q9Y253 P62753 RPS6;POLH 40S ribosomal protein S6;DNA polymerase eta 1 0 RLSS(1)LR;RLS(0.001)S(0.999)LR;RLS(0.003)S(0.997)LR;RLS(0.001)S(0.999)LR ;;; 103.35 0.029152 69380900000 32353800 48391000 50652240 34602350 54781750 49812840 56469690 66945210 47174320 47666830 TRUE FALSE FALSE 39550791.19 54049906.5 69390611.39 36492588.76 49327486.62 52420963.28 44404479.42 50526792.28 56641773.32 35784366.52 1.105253356 1.510433515 1.939132033 1.019791387 1.378464715 1.464912429 1.240890471 1.411979509 1.582863659 1 25.0928261 -10.13886246 4.128592849 0.999911378 1.409610802 0.198705928 0.244472421 75109392.51 90642145.74 99286.90376 0.060730888 7.26E-11 10.13886246 0.409699424 RLSS(ph)LR ddPTM_HeLa_A486_30min_R1 3 RLSSLR 6 1 P62753;A2A3R5;Q9Y253-2;Q9Y253 P62753 RPS6;POLH 40S ribosomal protein S6;DNA polymerase eta 1 0 RLSS(1)LR;RLSS(1)LR;RLS(0.001)S(0.999)LR ;; 106.94 0.026353 52189600000 17700600 19518500 18297000 5788710 22874000 16277200 19093000 19703500 15909300 18179300 TRUE FALSE FALSE 16459879.35 17971782.97 25382088.41 13476409.43 20004929.63 14269084.56 14315729.45 15217443.17 17288330.93 13627084.95 1.207879705 1.318828131 1.862620546 0.988942938 1.468027072 1.047112028 1.050534983 1.11670568 1.268674188 1 23.69997364 -5.967690074 1.42115563 1.105472941 1.40833988 0.243472509 0.222800183 0.591165792 2.463983583 0.0903607 0.104218994 1.08E-06 5.967690074 0.302866939 RLSS(ph)LRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 1 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.017)S(0.983)LRAS(0.884)T(0.112)S(0.003)K 117.9 0.00016899 648480000 274040 295140 228870 254360 293760 285390 366970 384690 214280 292580 TRUE FALSE FALSE 334999.2526 329654.0556 313538.5371 268255.0427 264512.2229 300332.5791 288563.8616 290344.1743 257284.0305 219645.1905 1.525183646 1.500848049 1.427477362 1.221310797 1.204270498 1.367353314 1.31377273 1.321878133 1.171362004 1 17.74481538 -1 0.063875542 0.623219543 2.819388588 0.736883855 0.078486315 183.0242967 0.871570605 5.73397994 36.84104324 0.1 1 2.196169045 RLSS(ph)LRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 2 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.431)S(0.569)LRAS(0.975)T(0.014)S(0.011)K;RLS(0.433)S(0.578)LRAS(0.536)T(0.399)S(0.053)K ; 106.31 0.0025771 24190000000 15842800 14786000 9099700 6250600 13470400 13648600 17640100 15940400 9135100 17396400 TRUE FALSE FALSE 14732301.53 13614303.51 12623347.54 14551712.69 11780816.83 11964774.5 13226360.4 12311118.9 9926937.823 13040228.21 1.129757953 1.044023409 0.968031183 1.115909358 0.903421063 0.917527999 1.014273691 0.944087688 0.761254916 1 23.63646578 -4.687849384 0.444627416 0.907886624 1.197571706 0.38789445 0.08040621 3.908066529 0.794583577 0.062626717 0.576039756 2.05E-05 4.687849384 0.289685082 RLSS(ph)LRAST(ph)SK ddPTM_HeLa_A485_30min_R1 5 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.446)S(0.554)LRAS(0.035)T(0.941)S(0.024)K;RLS(0.47)S(0.57)LRAS(0.208)T(0.672)S(0.081)K;RLS(0.439)S(0.561)LRAS(0.065)T(0.821)S(0.115)K;RLS(0.452)S(0.549)LRAS(0.191)T(0.699)S(0.11)K;RLS(0.431)S(0.569)LRAS(0.039)T(0.668)S(0.292)K ;;;; 103.01 0.00079822 48440300000 26522600 30060000 20000500 25255400 26155000 26763600 35354900 37093400 17516600 26994100 TRUE FALSE FALSE 32422460.87 33575255.51 27399517.24 26635038.55 23550916.36 28164900.71 27801036.79 27996185.49 21032020.95 20264967.66 1.599926603 1.656812687 1.352063211 1.31433906 1.16214922 1.389832009 1.371876692 1.381506547 1.037851197 1 24.27248454 -1 0.139906033 0.974953389 3.210685119 0.645646375 0.120636636 54.62767638 0.510255977 0.567765839 24.42407496 0.1 1 2.23573173 RLSS(ph)LRAST(ph)SK ddPTM_HeLa_A486_30min_R1 1 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.448)S(0.552)LRAS(0.015)T(0.9)S(0.085)K 102.58 0.00084787 10885000000 12046000 11382000 6711500 4619100 10774000 10053000 13210000 12079000 7311800 13539000 TRUE FALSE FALSE 11201637.61 10480048.87 9310372.54 10753498.24 9422624.456 8812763.071 9904718.279 9328875.383 7945592.711 10148746.28 1.103745951 1.032644682 0.917391399 1.059588834 0.928452067 0.868359779 0.975954863 0.919214564 0.782913721 1 23.27479818 -1.670439599 0.398274084 0.903281802 2.757406977 0.420049419 0.068931619 39.89789625 0.895503229 0.049652426 53.59038345 0.021357991 1.670439599 1.854125175 RLSS(ph)LRASTS(ph)KSESSQK ddPTM_HeLa_A486_30min_R1 2 RLSSLRASTSKSESSQK 17 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RLS(0.442)S(0.558)LRAS(0.193)T(0.154)S(0.585)KS(0.067)ES(0.001)SQK;RLS(0.442)S(0.559)LRAS(0.298)T(0.235)S(0.465)KS(0.002)ESSQK ; 147.26 3.75E-08 5338700000 2092500 1256640 1199050 2076370 3587500 1931060 3691900 4348900 920970 2220850 TRUE FALSE FALSE 1945826.556 1157059.27 1663354.272 4833894.294 3137522.298 1692825.451 2768147.571 3358750.406 1000800.421 1664734.705 1.168850839 0.695041238 0.999170779 2.903702482 1.884698078 1.016874008 1.662816041 2.017588987 0.601177123 1 20.66686085 -2.669284417 13.00297099 1.445268065 1.304895323 0 0.680259674 0 0 0.161725455 0 0.002141488 2.669284417 -0.140372742 RLSS(ph)SESPQR ddPTM_HeLa_A486_30min_R1 1 RLSSSESPQR 10 1 J3KS33;Q9H2G4 J3KS33 TSPYL2 Testis-specific Y-encoded-like protein 2 1 0 RLS(0.309)S(0.639)S(0.052)ESPQR 78.541 0.0050325 150230000 43376 55779 59889 11656 65234 45631 52768 56414 49718 47012 TRUE FALSE FALSE 40335.56639 51358.8689 83079.62468 27135.75706 57051.74344 40001.51116 39564.88828 43569.76371 54027.59627 35239.8892 1.144599694 1.457407218 2.357545003 0.770029579 1.618953542 1.135120231 1.122730212 1.236376297 1.533137518 1 15.10492177 -5.288957177 24.99947273 1.223426004 1.633606873 0.242477194 0.363347951 1094.966062 994756.5234 0.100871254 0.149656669 5.14E-06 5.288957177 0.410180869 RLSS(ph)SLNPSK ddPTM_HeLa_A485_30min_R1 1 RLSSSLNPSK 10 1 A0A590UJ01;Q13535-2;Q13535-3;Q13535 A0A590UJ01 ATR Serine/threonine-protein kinase ATR 1 0 RLS(0.216)S(0.626)S(0.158)LNPSK 119.32 0.0001776 222140000 220440 256430 226900 254560 294440 260860 323890 336280 222320 330040 TRUE FALSE FALSE 269476.1175 286417.2579 310839.7521 268465.9682 265124.5198 274518.2262 254688.2556 253806.8027 266937.5848 247767.1019 1.087618636 1.155993898 1.254564265 1.083541625 1.070055377 1.107968831 1.027934111 1.024376524 1.077372995 1 17.91862512 -5.480962323 11.34057711 1.05621088 1.165772454 0.539640656 0.0473062 0.849244306 228.2125669 0.013623568 0.020108734 3.30E-06 5.480962323 0.109561573 RLSS(ph)SSATLLNS(ph)PDR ddPTM_HeLa_A486_30min_R1 1 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 2 0 RLS(0.199)S(0.795)S(0.005)S(0.002)AT(0.001)LLNS(0.999)PDR 196.96 1.59E-25 261180000 311600 322570 260120 119770 371160 297830 349000 318140 295850 351150 TRUE FALSE FALSE 289758.4491 297008.3784 360845.4303 278830.6128 324605.6519 261086.7627 261676.5087 245706.4669 321494.5162 263219.7544 1.10082334 1.128366597 1.370890384 1.059307321 1.23321159 0.991896536 0.994137044 0.933465148 1.221392053 1 18.00590824 -6.266640673 24.9491236 1.021892154 1.17979789 0.333458165 0.106084118 491.9309012 2359643.633 0.036066949 0.032754347 5.41E-07 6.266640673 0.157905736 RLSS(ph)STVAISYSPDR ddPTM_HeLa_A486_30min_R1 1 RLSSSTVAISYSPDR 15 1 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RLS(0.07)S(0.451)S(0.451)T(0.026)VAIS(0.001)YSPDR 150.11 1.46E-07 209860000 107160 154930 170020 46845 191900 108400 124520 149390 132570 132990 TRUE FALSE FALSE 99648.63737 142652.7826 235856.2973 109057.5274 167830.1126 95026.71013 93363.77896 115377.1582 144061.2743 99688.43838 0.999600746 1.430986229 2.365934316 1.093983708 1.68354641 0.953237022 0.936555738 1.157377526 1.445115168 1 16.60513857 -6.26180208 24.99998413 1.098174346 1.534058809 0.237562114 0.372147485 50.5655604 3485275.537 0.129358584 0.121252113 5.47E-07 6.26180208 0.435884463 RLSS(ph)TSLASGHSVR ddPTM_HeLa_A485_30min_R1 1 RLSSTSLASGHSVR 14 1 M0QZ82;Q9BZL6-2;Q9BZL6;Q9BZL6-3 M0QZ82 PRKD2 Serine/threonine-protein kinase D2 1 0 RLS(0.343)S(0.535)T(0.122)SLASGHSVR 183.53 1.23E-17 1276900000 152710 293980 364580 113240 364240 238200 301400 271350 280720 184060 TRUE FALSE FALSE 186679.8127 328358.4037 499453.3134 119426.0145 327974.9867 250671.7837 237003.4278 204800.987 337057.9291 138177.2294 1.351017194 2.376356837 3.614584803 0.864295912 2.373582016 1.814132363 1.715213345 1.482161627 2.439316019 1 17.07616036 -5.277711276 24.99987619 1.727133129 2.440223554 0.204923129 0.695385373 1344.955196 2066364.161 0.192138474 0.285960877 5.28E-06 5.277711276 0.713090426 RLSS(ph)TSLASGHSVR ddPTM_HeLa_A486_30min_R1 2 RLSSTSLASGHSVR 14 1 M0QZ82;Q9BZL6-2;Q9BZL6;Q9BZL6-3 M0QZ82 PRKD2 Serine/threonine-protein kinase D2 1 0 RLS(0.297)S(0.669)T(0.034)SLASGHSVR;RLS(0.35)S(0.625)T(0.025)SLASGHSVR ; 163.74 4.06E-12 2003410000 242100 274560 290980 26224 350990 187690 232090 224880 285710 128720 TRUE FALSE FALSE 225130.0402 252802.8657 403655.2487 61050.79729 306965.5613 164534.7161 174018.6272 173679.7331 310475.5728 96487.67417 2.333251808 2.620053471 4.183490297 0.632731567 3.181396629 1.705240773 1.803532199 1.800019895 3.217774452 1 16.55805704 -5.255734936 24.99510195 1.979678176 3.003043874 0.254143958 0.887604805 711.82039 3118967.56 0.232578788 0.389100076 5.55E-06 5.255734936 1.023365698 RLSSLRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 1 RLSSLRASTSK 11 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 1 0 RLS(0.071)S(0.071)LRAS(0.839)T(0.015)S(0.005)K 58.268 0.023635 411770000 122040 217390 170790 104060 216260 216440 200170 306910 182130 159400 TRUE FALSE FALSE 149187.377 242811.8695 233972.3282 109744.5343 194728.3951 227772.4637 157402.0443 231639.8413 218681.8204 119664.5135 1.246713604 2.029105056 1.955235694 0.917101746 1.627286063 1.903425309 1.315361084 1.935743809 1.827457564 1 16.86863586 RLSSS(ph)SATLLNSPDR ddPTM_HeLa_A485_30min_R1 1 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 RLS(0.187)S(0.047)S(0.753)S(0.012)ATLLNSPDR 178.54 6.56E-18 527790000 324680 357640 260960 354530 452790 369690 488980 507610 255530 534430 TRUE FALSE FALSE 396903.9459 399462.8869 357499.9635 373897.0762 407708.6378 389046.3968 384505.4284 383117.8516 306812.5271 401206.4365 0.989276118 0.995654233 0.891062383 0.931931899 1.016206623 0.969691314 0.958373031 0.95491452 0.764724838 1 18.61398523 -7.56192396 24.99903654 0.874847978 0.963372278 0.213357425 0.062110287 213.7982396 136882.6302 0.039539971 0.014944746 2.74E-08 7.56192396 0.088524299 RLSSS(ph)SATLLNSPDR ddPTM_HeLa_A486_30min_R1 1 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 RLS(0.199)S(0.199)S(0.6)S(0.002)ATLLNSPDR 160.27 4.43E-12 326540000 617880 609880 409580 323120 696500 703270 906430 825390 533020 1021400 TRUE FALSE FALSE 574569.8027 561550.8877 568180.3449 752239.6896 609138.4754 616507.6977 679631.6268 637466.7151 579222.6028 765634.7918 0.75044892 0.73344484 0.742103613 0.98250458 0.795599262 0.805224246 0.887670772 0.832598939 0.756525969 1 19.54629686 -14 0.12237593 1.546659484 0.73334201 0.375054252 0.07332987 180.2903006 1.419215429 24.98560878 0.703247109 1.00E-14 14 -0.813317474 RLSSS(ph)TVAISYSPDR ddPTM_HeLa_A485_30min_R1 1 RLSSSTVAISYSPDR 15 1 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RLS(0.262)S(0.262)S(0.461)T(0.014)VAISYSPDR 144.27 5.11E-08 300740000 103760 156290 125130 79683 163910 141420 158190 202320 84325 106210 TRUE FALSE FALSE 126841.054 174566.756 171420.7941 84035.88052 147590.5449 148824.5325 124391.4142 152700.7028 101248.254 79733.80165 1.590806551 2.189369531 2.14991372 1.053955522 1.851041112 1.866517455 1.560083824 1.915131345 1.269828503 1 16.28290384 -11.08310368 0.178947949 2.75E-14 1.968787409 0.351543362 0.325315208 44.37595668 1.124110046 19.39265244 1.224491938 8.26E-12 11.08310368 1.968787409 RLSSSSATLLNS(ph)PDR ddPTM_HeLa_A485_30min_R1 2 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 RLSSSSATLLNS(1)PDR;RLSSSSATLLNS(0.999)PDR ; 109.83 0.00014168 983480000 161296 252272 231722 205743 273193 238965 276455 328936 219656 259060 TRUE FALSE FALSE 197175.7387 281773.0159 317445.6106 216982.2191 245992.9457 251476.8379 217388.1308 248263.9302 263738.9444 194481.1096 1.01385548 1.448845168 1.632269639 1.115698175 1.264868069 1.293065627 1.117785327 1.276545217 1.356116 1 17.5692705 RLSSSSATLLNS(ph)PDR ddPTM_HeLa_A486_30min_R1 3 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 RLSSSSATLLNS(1)PDR;RLSSSSATLLNS(1)PDR;RLSSSSATLLNS(1)PDR ;; 200.4 1.62E-25 1942600000 823390 738130 663492 269640 807240 634682 801160 812050 595710 951570 TRUE FALSE FALSE 765674.613 679637.8906 920413.8713 627735.5469 705988.432 556381.3878 600701.2942 627163.9419 647346.6224 713290.6783 1.073439814 0.952820374 1.29037698 0.880055728 0.989762594 0.780020551 0.842154976 0.879254364 0.907549534 1 19.44413059 -5.325008587 24.99988241 0.888649232 1.090273933 0.483512407 0.098143916 173.3216456 68161.80565 0.026995437 0.040040712 4.73E-06 5.325008587 0.201624701 RLSSSTVAISYS(ph)PDR ddPTM_HeLa_A485_30min_R1 1 RLSSSTVAISYSPDR 15 1 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RLSSSTVAIS(0.001)YS(0.999)PDR 98.316 0.00041069 331820000 172680 219600 204180 162440 307030 220060 246540 311180 176700 204470 TRUE FALSE FALSE 211092.0703 245280.3097 279714.6786 171313.6859 276461.0152 231582.0013 193864.715 234862.6171 212162.0692 153499.392 1.375198087 1.597923657 1.822252681 1.116054492 1.801056093 1.508683509 1.262967315 1.530055683 1.382168792 1 17.22787342 -9.786210121 0.310952155 0.766491911 1.560857244 0.358889362 0.204399689 12.74284378 1.138744671 2.991043737 0.212544507 1.64E-10 9.786210121 0.794365332 RLSSSTVAISYS(ph)PDR ddPTM_HeLa_A486_30min_R1 4 RLSSSTVAISYSPDR 15 1 Q96T17-2;Q96T17;Q96T17-5 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RLSSSTVAIS(0.286)Y(0.001)S(0.712)PDR;RLSSSTVAIS(0.016)YS(0.984)PDR;RLSSSTVAIS(0.224)YS(0.776)PDR;RLSSSTVAISYS(1)PDR ;;; 124.73 1.65E-05 593213000 506309 435058 405648 223944 584820 404028 521555 516700 354859 482820 TRUE FALSE FALSE 470819.3537 400582.4196 562725.7692 521352.9495 511466.4224 354183.1332 391056.4226 399058.6895 385618.4638 361918.7294 1.300898007 1.106829758 1.554840144 1.440524922 1.413207941 0.978626151 1.08050894 1.102619613 1.065483581 1 18.46530624 -6.25849553 24.97387839 1.054052709 1.363949849 0.665705544 0.112523645 176.4501326 1496900.93 0.040818545 0.039126944 5.51E-07 6.25849553 0.30989714 RLST(ph)EHSSVSEYHPADGYAFSSNIYTR ddPTM_HeLa_A486_30min_R1 1 RLSTEHSSVSEYHPADGYAFSSNIYTR 27 1 A0A2R8Y4W2;A0A2R8YE63;Q12929-2;Q12929 A0A2R8Y4W2 EPS8 Epidermal growth factor receptor kinase substrate 8 1 0 RLS(0.278)T(0.688)EHS(0.028)S(0.006)VSEYHPADGYAFSSNIYTR 175.75 1.65E-14 635460000 131500 140710 202130 39378 212220 97205 132010 119900 155380 53383 TRUE FALSE FALSE 122282.5291 129559.6271 280400.1492 91673.97405 185601.3887 85212.83541 98979.70174 92601.3874 168848.4635 40015.54933 3.055875306 3.237732064 7.007279767 2.290958779 4.638231683 2.12949308 2.473530999 2.314135103 4.219571299 1 15.28827309 -6.26567928 24.7707021 2.512366066 4.068122417 0.253006857 1.386555828 494.1178224 2886764.666 0.470879831 0.430039244 5.42E-07 6.26567928 1.555756351 RLST(ph)HSPFR ddPTM_HeLa_A486_30min_R1 1 RLSTHSPFR 9 1 A0A1B0GWG0;A0A2R8Y6D0;A0A2R8Y5C8;A0A2R8Y783;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6 A0A1B0GWG0;P11171 EPB41 Protein 4.1 1 0 RLS(0.127)T(0.873)HSPFR 109.69 0.00082715 1646700000 114330 135160 117380 37976 144140 109950 129820 133000 100530 116240 TRUE FALSE FALSE 106316.0574 124449.4294 162832.6795 88410.0472 126060.6171 96385.48689 97337.6629 102718.8034 109244.0213 87132.7474 1.220161886 1.428273905 1.868788537 1.014659239 1.44676509 1.106191297 1.117119175 1.178877132 1.253765371 1 16.41092741 -5.288468113 24.99896055 1.175045196 1.497994874 0.406873801 0.190799447 743.7131998 687861.0806 0.053250365 0.079005607 5.15E-06 5.288468113 0.322949678 RLSYNTASNK ddPTM_HeLa_A485_30min_R1 2 RLSYNTASNK 10 1 P49207 P49207 RPL34 60S ribosomal protein L34 0 0 ; ; 80.014 0.010187 28927000 59739 83854 80873 62245 94968 83403 96655 116913 78601 95897 FALSE FALSE TRUE 73027.73445 93659.99587 110791.2881 65645.28674 85512.65247 87769.85211 76003.86965 88239.90344 94375.49973 71991.64275 1.014391833 1.300984285 1.53894652 0.911845934 1.187813602 1.219167236 1.055731843 1.225696485 1.310922992 1 16.13554182 -10.20760571 4.118882146 0.999897242 1.198137885 0.111119825 0.166361613 113585965.4 22.93118434 116277.9479 0.040215775 6.20E-11 10.20760571 0.198240643 RLT(ph)ADMISHPLGDFR ddPTM_HeLa_A485_30min_R1 1 RLTADMISHPLGDFR 15 1 Q00587-2;Q00587;B0QYC6;B0QYC7;B0QYC8 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 RLT(0.999)ADMIS(0.001)HPLGDFR 98.175 0.00061259 80640000 20024 25328 25645 24661 36242 28199 28025 30878 24094 29071 TRUE FALSE FALSE 24478.26972 28289.88928 35132.15268 26008.16799 32633.61923 29675.45604 22037.22981 23305.12209 28929.4448 21824.13471 1.121614673 1.296266251 1.609784449 1.191715884 1.495299569 1.359754072 1.009764194 1.067860073 1.325571216 1 14.41363683 -6.747894446 24.9549035 1.106453887 1.355289638 0.374451226 0.154731279 242.7353281 447210.7793 0.059042574 0.045473126 1.79E-07 6.747894446 0.248835752 RLT(ph)ADMISHPLGDFR ddPTM_HeLa_A486_30min_R1 2 RLTADMISHPLGDFR 15 1 Q00587-2;Q00587;B0QYC6;B0QYC7;B0QYC8 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 RLT(1)ADMISHPLGDFR;RLT(1)ADMISHPLGDFR ; 142.43 8.24E-08 108496000 73135 94473 80139 33979.5 112450 83583 101435 93416 72526 82612 TRUE FALSE FALSE 68008.61417 86986.61542 111170.967 79105.99323 98345.47245 73271.37927 76054.89013 72147.21606 78812.61208 61925.41749 1.098234246 1.404699701 1.795239685 1.277439805 1.588127726 1.183219787 1.228169195 1.165066284 1.272702152 1 15.91824407 -6.284410631 23.90014046 1.183794168 1.442700139 0.337161186 0.183534798 562.7671963 585521.1948 0.064568641 0.056989253 5.20E-07 6.284410631 0.258905971 RLT(ph)VNEAVK ddPTM_HeLa_A485_30min_R1 3 RLTVNEAVK 9 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RLT(1)VNEAVK;RLT(1)VNEAVK;RLT(1)VNEAVK ;; 130.15 0.00021147 792910000 740060 672360 575420 805610 906180 795200 1077330 1105610 679290 1063140 TRUE FALSE FALSE 904683.7938 750986.6532 788291.8032 849618.4344 815957.5374 836835.4424 847149.6445 834457.414 815617.2722 798118.7636 1.133520267 0.940945994 0.987687346 1.064526325 1.022351027 1.048509922 1.061433064 1.04553038 1.021924693 1 19.60624392 -5.26265742 24.99890836 1.040443775 1.012740682 0.015230281 0.04877224 321.357044 6595411.709 0.013062607 0.020680388 5.46E-06 5.26265742 -0.027703093 RLT(ph)VNEAVK ddPTM_HeLa_A486_30min_R1 3 RLTVNEAVK 9 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 RLT(1)VNEAVK;RLT(1)VNEAVK;RLT(1)VNEAVK ;; 147.42 7.58E-05 880750000 862200 965200 672190 417869 1018670 1041710 1273190 1279360 781000 1055520 TRUE FALSE FALSE 801764.2324 888714.0368 932479.9699 972820.1499 890898.9099 913194.4115 954624.3956 988077.6562 848697.7088 791210.9217 1.013338176 1.123232772 1.1785479 1.229533268 1.125994201 1.154173162 1.206535918 1.248817008 1.072656716 1 19.59370282 -4.316332067 2.750371385 1.164489138 0.994358609 0.239656223 0.071056396 0.462110934 5.126099451 0.01734694 0.167245126 4.83E-05 4.316332067 -0.170130529 RLTDLDK(ac)AQLLEIAK ddPTM_HeLa_A485_30min_R1 2 RLTDLDKAQLLEIAK 15 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 0 1 ; RLTDLDK(1)AQLLEIAK;RLTDLDK(1)AQLLEIAK 177.67 3.22E-10 94161000 120501 188269 149898 112532 210876 204495 241949 345970 166145 187340 FALSE TRUE FALSE 147306.0317 210285.4218 205351.508 118679.3382 189880.445 215202.042 190254.6196 261120.315 199488.7775 140639.5857 1.047400922 1.495207916 1.460125945 0.843854435 1.350120907 1.530166922 1.352781428 1.856662999 1.418439741 1 17.1016432 -6.000864248 24.99980006 1.475771445 1.230567326 0.121445105 0.264317569 61.59447966 1781823.206 0.081676679 0.091511372 9.98E-07 6.000864248 -0.245204118 RLTDLDK(ac)AQLLEIAK ddPTM_HeLa_A486_30min_R1 2 RLTDLDKAQLLEIAK 15 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 0 1 ; RLTDLDK(1)AQLLEIAK;RLTDLDK(1)AQLLEIAK 153.74 2.63E-06 91687000 67995 62181 64639 30331 95676 66370 79196 82356 57764 89123 FALSE TRUE FALSE 63228.90163 57253.5511 89668.95189 70612.10084 83675.42394 58181.9442 59380.32315 63605.33662 62771.03003 66806.02071 0.946455139 0.857011846 1.342228604 1.056972113 1.252513217 0.870908693 0.888846881 0.952089886 0.939601392 1 16.02769051 -6.288793412 24.99147552 0.924704824 1.090097552 0.267082748 0.1329772 1066.521394 974402.5763 0.048549716 0.04282645 5.14E-07 6.288793412 0.165392728 RLTLEDLEDSWDR ddPTM_HeLa_A485_30min_R1 1 RLTLEDLEDSWDR 13 1 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 84.566 0.0066047 20411000 12695 23564 25402 12940 22024 20405 22547 29883 21348 18549 FALSE FALSE TRUE 15518.95895 26319.60482 34799.25687 13646.87943 19831.21323 21473.37425 17729.64926 22554.1474 25632.34778 13925.07567 1.114461373 1.890087023 2.499035387 0.980021923 1.424136838 1.542065175 1.273217445 1.619678624 1.840733106 1 13.76539755 -5.281930446 24.99837738 1.412444102 1.84008405 0.210557306 0.397874972 1316.443681 1606011.639 0.113186235 0.168103273 5.22E-06 5.281930446 0.427639948 RLTLEDLEDSWDR ddPTM_HeLa_A486_30min_R1 1 RLTLEDLEDSWDR 13 1 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 68.83 0.028358 62749000 15825 17492 13693 5645.6 20291 15524 15832 19132 13351 15173 FALSE FALSE TRUE 14715.74922 16105.87022 18995.29631 13143.24211 17745.91357 13608.80672 11870.66615 14776.06125 14508.27543 11373.58204 1.293853525 1.4160772 1.67012435 1.155593908 1.560274811 1.196527767 1.04370515 1.299156343 1.275611797 1 13.47339907 -6.371327327 7.242535295 1.171811059 1.417850565 0.404896566 0.155303801 0.288576714 16.90480982 0.053808114 0.047348735 4.25E-07 6.371327327 0.246039506 RLTVSSLQESGLKVNQPASFAVSLNGAK ddPTM_HeLa_A485_30min_R1 2 RLTVSSLQESGLKVNQPASFAVSLNGAK 28 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 231.9 2.29E-59 53963000 47922 57961 36656 42244 59289 65164 83895 97779 39073 54211 FALSE FALSE TRUE 58582.08357 64739.03476 50216.57978 44551.68275 53385.97898 68575.88628 65970.14789 73798.54694 46914.5927 40697.19538 1.439462425 1.590749292 1.233907627 1.094711376 1.31178521 1.685027325 1.620999857 1.813357069 1.152772132 1 15.31264176 -6.220395646 24.12656937 1.515676731 1.329511928 0.025170593 0.259022824 807.7202994 474798.3615 0.085356824 0.085355531 6.02E-07 6.220395646 -0.186164804 RLTVSSLQESGLKVNQPASFAVSLNGAK ddPTM_HeLa_A486_30min_R1 2 RLTVSSLQESGLKVNQPASFAVSLNGAK 28 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 184.06 8.55E-33 44150000 30454.6 24572.8 18095.6 10064.5 33649.2 29267.2 32225.7 32256.7 21666.5 38543.3 FALSE FALSE TRUE 28319.88981 22625.56184 25102.70094 23430.66463 29428.60357 25656.51043 24162.48901 24912.55357 23544.56967 28891.80681 0.980204873 0.783113427 0.86885189 0.810979555 1.01857955 0.888020282 0.836309379 0.86227053 0.814922024 1 14.81837281 -10.08732926 4.466330891 1.000008375 0.872290563 0.223912063 0.070500363 93888656.81 56923089.99 11260.67198 0.017336724 8.18E-11 10.08732926 -0.127717812 RLVMSIR ddPTM_HeLa_A485_30min_R1 1 RLVMSIR 7 1 P27694;I3L4R8 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 0 0 91.318 0.0059619 0 9796 13657 13976 7988.6 17044 12459 12302 14463 10024 11230 FALSE FALSE TRUE 11975.0864 15254.06735 19146.30399 8424.99699 15347.03951 13111.33397 9673.577202 10915.92657 12035.72485 8430.567673 1.420436543 1.809376064 2.271057506 0.999339228 1.820404048 1.555213656 1.147440787 1.294803268 1.427629232 1 13.04141406 -6.781050729 0.42515252 1.055853736 1.797632705 0.297754321 0.321088531 1.448929625 0.607016493 0.345187562 0.370819186 1.66E-07 6.781050729 0.74177897 RMEDEGGFPVPQENGQPES(ph)PR ddPTM_HeLa_A486_30min_R1 1 RMEDEGGFPVPQENGQPESPR 21 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RMEDEGGFPVPQENGQPES(1)PR 130.57 6.65E-07 241470000 104530 115310 105210 33680 146220 99899 109340 121130 98561 115350 TRUE FALSE FALSE 97202.98679 106172.4156 145950.1296 78408.74209 127879.7242 87574.47708 81981.97552 93551.34325 107104.3468 86465.6092 1.124180905 1.227914967 1.687955836 0.906819981 1.478966324 1.012824381 0.948145468 1.081948582 1.238693023 1 16.39983881 -6.290069251 24.73091028 1.054682997 1.283344748 0.236381774 0.205633213 962.0629032 831041.0016 0.070809279 0.062459561 5.13E-07 6.290069251 0.22866175 RMEDEGGFPVPQENGQPES(ph)PRR ddPTM_HeLa_A485_30min_R1 2 RMEDEGGFPVPQENGQPESPRR 22 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RMEDEGGFPVPQENGQPES(1)PRR;RMEDEGGFPVPQENGQPES(1)PRR ; 91.1 0.00067786 386980000 100230 107662 112255 94909 145064 130418 151557 147525 116419 124862 TRUE FALSE FALSE 122525.8177 120252.1344 153782.7958 100093.6383 130620.9188 137246.4848 119175.6088 111344.2624 139783.2254 93736.20131 1.307134447 1.282878255 1.640591294 1.067822644 1.393494904 1.464178011 1.271393626 1.187846967 1.491240561 1 16.51631871 -10.50668182 2.849110845 0.986573714 1.341998467 0.310749082 0.154156226 34385563.05 37469985.11 3604383.16 0.0376408 3.11E-11 10.50668182 0.355424753 RMEDEGGFPVPQENGQPES(ph)PRR ddPTM_HeLa_A486_30min_R1 1 RMEDEGGFPVPQENGQPESPRR 22 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RMEDEGGFPVPQENGQPES(1)PRR 103.35 0.00013815 231130000 61981 56163 58802 20942 72300 50670 65244 65665 41670 56350 TRUE FALSE FALSE 57636.45197 51712.43934 81571.70917 48754.03435 63231.45983 44418.85057 48919.26112 50714.51296 45281.98915 42239.59322 1.364512477 1.224264615 1.931167015 1.154225944 1.496971325 1.051592764 1.1581376 1.200639236 1.072027112 1 15.36630832 -6.261555505 24.999807 1.112872929 1.434615656 0.411370809 0.201531056 11.43751179 2462037.083 0.067409797 0.063274918 5.48E-07 6.261555505 0.321742726 RMEELHNQEMQK ddPTM_HeLa_A485_30min_R1 1 RMEELHNQEMQK 12 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 88.441 0.0051075 2711600 9862.4 10024 8872.4 10917 13542 11746 12773 15606 9335.7 16438 FALSE FALSE TRUE 12056.25686 11196.2196 12154.66997 11513.36807 12193.71093 12361.0024 10043.9442 11778.60403 11209.28936 12340.30912 0.976981755 0.907288423 0.984956686 0.932988627 0.98812038 1.001676885 0.813913501 0.954482089 0.908347534 1 13.59109091 RMEELHNQEMQK ddPTM_HeLa_A486_30min_R1 1 RMEELHNQEMQK 12 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 99.011 0.00061889 317380000 181440 168660 131270 79516 229930 203970 225760 228680 145660 207630 FALSE FALSE TRUE 168721.993 155294.7674 182101.2595 185117.2665 201090.0354 178806.2552 169272.4602 176614.556 158285.9261 155638.0966 1.084066155 0.997794054 1.170030112 1.189408446 1.292036075 1.148859175 1.087602996 1.134777153 1.017012734 1 17.24783572 -7.783670083 3.576109259 0.998510767 1.141056807 0.337985465 0.072608117 0.289526647 7.243131265 0.074943873 0.021018114 1.65E-08 7.783670083 0.142546039 RMEELHNQEVQK ddPTM_HeLa_A485_30min_R1 1 RMEELHNQEVQK 12 1 Q15233-2;Q15233;H7C367;C9JYS8 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 57.802 0.018211 449110000 62790 83638 59412 73209 94035 77212 96868 110270 66050 90072 FALSE FALSE TRUE 76757.41888 93418.73655 81390.97114 77208.2223 84672.54522 81254.70093 76171.36046 83226.1096 79305.62915 67618.70805 1.135150628 1.381551633 1.203675336 1.141817472 1.252205901 1.201660062 1.126483523 1.230814844 1.172835617 1 16.04513483 -14 0.174362847 0.165172484 1.254931439 0.454781203 0.069274889 118.121688 1.124234103 34.04565995 0.23116739 1.00E-14 14 1.089758955 RMEELHNQEVQK ddPTM_HeLa_A486_30min_R1 1 RMEELHNQEVQK 12 1 Q15233-2;Q15233;H7C367;C9JYS8 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 0 0 64.55 0.010478 290640000 73379 82183 62964 34295 89367 78267 87364 91887 67307 101340 FALSE FALSE TRUE 68235.51103 75670.51977 87345.34703 79840.49317 78157.75755 68611.2133 65504.60316 70966.33598 73141.22495 75963.80439 0.898263477 0.996139153 1.149828497 1.051033368 1.02888156 0.903209283 0.862313357 0.934212505 0.962843101 1 16.21302454 -6.253152385 23.32400301 0.924016286 1.031635527 0.315061845 0.067101959 287.562766 809353.3675 0.023696712 0.023271509 5.58E-07 6.253152385 0.107619241 RMFGGPGTASRPSSSR ddPTM_HeLa_A485_30min_R1 1 RMFGGPGTASRPSSSR 16 2 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 87.287 0.0036555 5791400 3133.3 3978 5614.5 2866.6 6683.8 4300.5 5397 5801.1 4026.4 4541.7 FALSE FALSE TRUE 3830.291775 4443.192496 7691.537189 3023.195099 6018.337404 4525.66753 4243.886861 4378.371129 4834.461548 3409.537774 1.123404998 1.303165646 2.255888539 0.886687669 1.765147596 1.327355152 1.244710322 1.284153871 1.417922859 1 11.73536045 -6.507080272 23.65460215 1.264041381 1.4770564 0.082289665 0.358830621 1012.991566 1516730.495 0.125837294 0.107572606 3.11E-07 6.507080272 0.21301502 RMIT(ph)S(ph)NEK ddPTM_HeLa_A485_30min_R1 2 RMITSNEK 8 1 Q96C45 Q96C45 ULK4 Serine/threonine-protein kinase ULK4 2 0 RMIT(1)S(1)NEK;RMIT(1)S(1)NEK ; 50.372 0.018308 1099890000 514390 1046630 1120570 111146 1112820 833020 535010 701400 990060 161336 TRUE FALSE FALSE 628814.2809 1169024.274 1535115.474 117217.6245 1002023.733 876635.6391 420700.7429 529380.5502 1188755.961 121117.9044 5.19175331 9.651952617 12.67455445 0.967797661 8.273126411 7.237869939 3.473481027 4.370786904 9.814865662 1 16.88605262 -5.253247596 24.99578509 5.323710255 9.220672952 0.256895793 3.20750538 907.0179411 2767598.949 0.855753666 1.450346726 5.58E-06 5.253247596 3.896962697 RMIT(ph)S(ph)NEK ddPTM_HeLa_A486_30min_R1 2 RMITSNEK 8 1 Q96C45 Q96C45 ULK4 Serine/threonine-protein kinase ULK4 2 0 RMIT(1)S(1)NEK;RMIT(1)S(1)NEK ; 57.108 0.013572 764710000 574000 950110 1297200 20197.2 1359080 517660 303910 556040 776920 88811 TRUE FALSE FALSE 533765.5641 874819.8234 1799510.58 47020.10231 1188611.513 453796.3724 227868.5036 429441.8303 844264.0511 66572.14754 8.017851067 13.14092839 27.03098288 0.706302922 17.85448656 6.816610086 3.422880469 6.450773276 12.68194106 1 16.02263109 -6.371998661 7.559340083 6.185310505 13.38473404 0.218991071 6.875466786 0.456001433 27.92901127 2.394723402 2.107891191 4.25E-07 6.371998661 7.199423531 RMNS(ph)TGGQT(ph)PR ddPTM_HeLa_A485_30min_R1 1 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 2 0 RMNS(0.976)T(0.094)GGQT(0.931)PR 62.055 0.019877 228120000 385940 546260 497850 278100 551310 460970 442120 456750 371380 321170 TRUE FALSE FALSE 471791.0215 610140.3552 682025.4323 293291.8988 496419.6406 485105.6764 347657.4502 344731.3463 445912.5595 241108.2297 1.95676034 2.530566277 2.828710713 1.216432551 2.058907907 2.011983071 1.441914491 1.429778431 1.849429031 1 17.87932137 -5.944678508 0.189950227 0.840960875 3.034369752 0.441775938 0.406920631 6.919493306 0.523208031 1.461738021 4.214566179 1.14E-06 5.944678508 2.193408878 RMNS(ph)TGGQT(ph)PR ddPTM_HeLa_A486_30min_R1 2 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 2 0 RMNS(0.941)T(0.146)GGQT(0.913)PR;RMNS(0.947)T(0.081)GGQT(0.972)PR ; 46.926 0.01184 0 572990 590550 584890 172645 775140 520590 543020 623630 456990 538240 TRUE FALSE FALSE 532826.3599 543752.6673 811375.0719 401926.285 677914.7133 456364.8988 407150.6525 481643.0627 496602.2612 403461.2006 1.320638413 1.347719846 2.01103618 0.99619563 1.680247598 1.131124624 1.009144502 1.193777895 1.230855062 1 18.62207042 -6.326012908 10.4551631 1.118196385 1.467824421 0.332634736 0.253603698 0.851303444 135.3591146 0.086685754 0.076439647 4.72E-07 6.326012908 0.349628036 RMNS(ph)TGGQTPR ddPTM_HeLa_A485_30min_R1 2 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 RMNS(0.462)T(0.462)GGQT(0.077)PR;RMNS(0.71)T(0.284)GGQT(0.006)PR ; 122.66 0.0002159 208474000 240590 428210 366240 167582 407740 362980 393690 459130 263910 220230 TRUE FALSE FALSE 294108.4155 478285.4346 501727.4165 176736.5803 367143.9739 381985.0715 309574.9153 346527.6476 316874.3163 165330.714 1.778909728 2.892901282 3.034689709 1.068988187 2.220664056 2.310430181 1.872458588 2.095966558 1.91660889 1 17.33499524 -10.32935601 0.196929582 2.65E-14 2.484383221 0.322781702 0.517685376 29.44935126 1.115006359 17.16101178 1.637802606 4.68E-11 10.32935601 2.484383221 RMNS(ph)TGGQTPR ddPTM_HeLa_A486_30min_R1 4 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 RMNS(0.692)T(0.291)GGQT(0.017)PR;RMNS(0.333)T(0.333)GGQT(0.333)PR;RMNS(0.427)T(0.427)GGQT(0.146)PR;RMNS(0.959)T(0.041)GGQTPR ;;; 87.914 0.0082731 267654000 281598 269399 264246 98994 374272 244591 294374 309304 200818 279606 TRUE FALSE FALSE 261859.4344 248050.8421 366569.128 230463.0349 327327.3158 214415.8492 220718.5116 238882.2313 218225.0659 209590.8377 1.249383977 1.183500409 1.748974965 1.099585447 1.561744394 1.0230211 1.053092368 1.139755124 1.041195638 1 17.67721612 -6.281803332 24.92021144 1.060252485 1.364534917 0.443825092 0.177389079 767.5454292 939273.9304 0.060099378 0.053063317 5.23E-07 6.281803332 0.304282432 RMNS(ph)VCEK ddPTM_HeLa_A486_30min_R1 1 RMNSVCEK 8 1 Q9BVR0 Q9BVR0 HERC2P3 Putative HERC2-like protein 3 1 0 RMNS(1)VCEK 84.213 0.015947 259050000 386990 690400 370990 558120 796430 996320 1278300 1202000 534460 973320 TRUE FALSE FALSE 359863.9994 635690.1896 514647.2635 1299331.566 696534.323 873404.1682 958455.8195 928330.8395 580787.4231 729594.3368 0.493238477 0.871292659 0.705388238 1.780895904 0.954687129 1.197109303 1.313683195 1.272393154 0.796041573 1 19.47673501 -5.107866756 21.82204325 1.198805616 0.707680041 0.428592601 0.262974235 9.362128985 1882.530802 0.068292342 0.118286146 7.80E-06 5.107866756 -0.491125575 RMNST(ph)GGQTPR ddPTM_HeLa_A486_30min_R1 1 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 RMNS(0.289)T(0.711)GGQTPR 160.87 9.83E-08 84844000 113450 101850 97612 37332 142580 79471 110030 120780 83274 115310 TRUE FALSE FALSE 105497.7409 93779.03507 135409.9805 86910.78265 124696.2869 69666.67602 82499.33022 93281.03061 90492.25737 86435.62546 1.220535402 1.084958136 1.566599187 1.005497238 1.442649211 0.805994932 0.954459805 1.079196571 1.046932407 1 16.39933844 -6.262859535 24.99975506 0.980837974 1.256542891 0.431620775 0.164380133 128.9800353 2270487.362 0.054360743 0.050565054 5.46E-07 6.262859535 0.275704917 RMNSTGGQT(ph)PR ddPTM_HeLa_A485_30min_R1 5 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 RMNS(0.021)T(0.021)GGQT(0.958)PR;RMNS(0.001)TGGQT(0.999)PR;RMNS(0.011)T(0.011)GGQT(0.978)PR;RMNS(0.022)T(0.076)GGQT(0.901)PR;RMNS(0.001)T(0.008)GGQT(0.991)PR ;;;; 153.81 5.74E-07 647381000 349307 558283 517096 310071 591671 506740 568647 678572 386724 378254 TRUE FALSE FALSE 427009.1371 623569.3404 708391.3286 327009.3936 532762.1578 533272.1228 447150.923 512151.153 464335.9596 283962.239 1.50375324 2.195958669 2.494667358 1.151594644 1.876172549 1.877968439 1.574684453 1.803588938 1.635203191 1 18.11533957 -11.07970401 0.200575304 4.55E-10 1.999031046 0.341150321 0.344257009 41.03579598 1.174396646 20.09090052 0.952264949 8.32E-12 11.07970401 1.999031045 RMNSTGGQT(ph)PR ddPTM_HeLa_A486_30min_R1 1 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 0 RMNS(0.077)T(0.077)GGQT(0.845)PR 71.806 0.016312 126210000 84077 83114 84663 29271 115030 78900 89856 91884 65960 88206 TRUE FALSE FALSE 78183.63647 76527.74394 117446.781 68144.36727 100601.8648 69166.1202 67373.0784 70964.01901 71677.46591 66118.64348 1.182474902 1.157430642 1.776303547 1.03063771 1.521535523 1.046091035 1.018972484 1.073283045 1.084073449 1 16.01276951 -6.291017152 23.45905835 1.047469595 1.331639922 0.3536182 0.195463815 381.8475594 302853.4737 0.066688832 0.05882613 5.12E-07 6.291017152 0.284170327 RMPS(ph)SGDK ddPTM_HeLa_A485_30min_R1 2 RMPSSGDK 8 1 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 RMPS(0.788)S(0.212)GDK;RMPS(0.69)S(0.31)GDK ; 105.25 0.0008465 887480000 941280 864500 557230 1545800 829360 923200 1352720 1319620 977630 2002620 TRUE FALSE FALSE 1150664.489 965595.7548 763372.5653 1630243.14 746786.0063 971537.3245 1063700.321 995981.1259 1173831.374 1503403.689 0.765372931 0.642273104 0.507762865 1.084368191 0.496730194 0.646225183 0.707528077 0.662484157 0.780782555 1 20.51980102 -8.113685224 3.167917595 0.999886116 0.687776382 0.271941157 0.154033465 0.612005932 12.74601298 0.143006478 0.038036927 7.70E-09 8.113685224 -0.312109734 RMPS(ph)SGDK ddPTM_HeLa_A486_30min_R1 2 RMPSSGDK 8 1 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 RMPS(0.751)S(0.249)GDK;RMPS(0.651)S(0.349)GDK ; 104.59 0.000864 700140000 1099160 673570 557620 495340 710710 1332140 1227360 932860 953950 1666300 TRUE FALSE FALSE 1022114.56 620193.8601 773545.3976 1153176.553 621566.1247 1167794.111 920261.5463 720468.1422 1036639.154 1249047.634 0.818315116 0.496533393 0.619308164 0.923244656 0.497632042 0.934947619 0.736770577 0.576813984 0.829943651 1 20.25239707 -14 0.200305231 2.329732481 0.661550704 0.24934698 0.153164362 198.5326619 1.964740171 105.5337804 0.357873671 1.00E-14 14 -1.668181777 RMS(ph)ADMSEIEAR ddPTM_HeLa_A485_30min_R1 3 RMSADMSEIEAR 12 1 O43318-3;O43318;Q9UG54;O43318-4;O43318-2 O43318-3 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 0 RMS(0.978)ADMS(0.022)EIEAR;RMS(0.574)ADMS(0.426)EIEAR;RMS(1)ADMSEIEAR ;; 204.94 2.01E-17 1635170000 498735 755220 812510 555130 918610 713880 766600 899690 753120 697600 TRUE FALSE FALSE 609676.8801 843536.4095 1113091.26 585455.3462 827149.963 751257.6529 602809.6475 679039.6168 904264.276 523701.1584 1.164169432 1.610720916 2.125432114 1.117918754 1.579431227 1.434515927 1.151056548 1.296616603 1.726679923 1 18.99838427 -5.319626707 24.99987161 1.34917835 1.631179771 0.178072742 0.297158463 477.1485881 205003.1781 0.083306065 0.123562915 4.79E-06 5.319626707 0.28200142 RMS(ph)ADMSEIEAR ddPTM_HeLa_A486_30min_R1 6 RMSADMSEIEAR 12 1 O43318-3;O43318;Q9UG54;O43318-4;O43318-2 O43318-3 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 0 RMS(1)ADMSEIEAR;RMS(1)ADMSEIEAR;RMS(1)ADMSEIEAR;RMS(1)ADMSEIEAR;RMS(1)ADMSEIEAR;RMS(0.751)ADMS(0.249)EIEAR ;;;;; 237.06 6.66E-28 2545490000 960757 1078605 1083600 424848 1314443 925778 1114376 1132012 872088 1028320 TRUE FALSE FALSE 893412.8957 993132.4116 1503198.94 989067.6146 1149573.302 811564.923 835547.3381 874277.5792 947681.29 770821.9788 1.159039208 1.288406972 1.950124648 1.283133644 1.491360306 1.05285649 1.083969271 1.134214648 1.229442486 1 19.55603818 -6.26043227 24.95224402 1.107477031 1.446547764 0.398263618 0.205097421 97.24538777 2409382.467 0.071555475 0.0676996 5.49E-07 6.26043227 0.339070733 RMS(ph)DEFVDSFK ddPTM_HeLa_A485_30min_R1 2 RMSDEFVDSFK 11 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 RMS(1)DEFVDSFK;RMS(1)DEFVDSFK ; 191.78 3.71E-11 423950000 469150 471740 421000 720270 655640 538840 716450 765440 534360 900840 TRUE FALSE FALSE 573510.799 526905.8894 576745.4193 759616.5263 590362.1795 567052.8292 563374.6046 577714.6398 641601.1506 676277.1667 0.848041051 0.779127132 0.852824031 1.12323255 0.872958912 0.838491756 0.833052826 0.854257201 0.948725141 1 19.36725512 -14 0.290078595 1.920624901 0.875723576 0.140209756 0.0892225 569.389531 5.376369885 316.9062445 0.103943861 1.00E-14 14 -1.044901325 RMS(ph)DEFVDSFK ddPTM_HeLa_A486_30min_R1 3 RMSDEFVDSFK 11 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 RMS(1)DEFVDSFK;RMS(0.754)DEFVDS(0.246)FK;RMS(1)DEFVDSFK ;; 230.67 1.07E-18 415810000 614950 676930 424889 241874 669970 698810 775440 755170 606880 857640 TRUE FALSE FALSE 571845.1806 623287.6015 589417.3997 563094.8956 585936.1154 612597.9272 581416.7102 583234.2762 659484.847 642881.3617 0.889503437 0.969521966 0.91683697 0.875892395 0.911421843 0.95289421 0.904391922 0.90721914 1.025826671 1 19.294193 -7.760351162 24.99999986 1.01291337 0.917133492 0.678706989 0.026673011 16.11098488 370198.8809 0.02083155 0.006863382 1.74E-08 7.760351162 -0.095779878 RMS(ph)DEFVDSFKK ddPTM_HeLa_A485_30min_R1 4 RMSDEFVDSFKK 12 2 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 RMS(1)DEFVDSFKK;RMS(0.975)DEFVDS(0.025)FKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK ;;; 178.02 3.68E-12 1199370000 2006710 1856820 1271411 2518430 2469840 2481110 3443610 3981320 1943150 3481080 TRUE FALSE FALSE 2453095.716 2073958.947 1741758.837 2656005.454 2223934.057 2611017.083 2707854.592 3004895.028 2333122.381 2613310.821 0.938692672 0.793613577 0.666495092 1.016337373 0.851002506 0.999122287 1.036177775 1.149842186 0.892784112 1 21.31744729 -5.960308476 1.223807992 1.031037011 0.815748225 0.383489577 0.103059236 0.441834404 1.388864681 0.045136295 0.053586845 1.10E-06 5.960308476 -0.215288786 RMS(ph)DEFVDSFKK ddPTM_HeLa_A486_30min_R1 4 RMSDEFVDSFKK 12 2 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK;RMS(1)DEFVDSFKK ;;; 179.74 3.83E-13 1262240000 2335061 2088195 1156738 945797 2155468 2431849 2933770 2866170 1801634 3412390 TRUE FALSE FALSE 2171385.282 1922718.823 1604657.932 2201863.214 1885109.104 2131832.196 2199709.716 2213605.659 1957801.086 2557905.333 0.848891964 0.751677084 0.627332807 0.860807156 0.736973757 0.833428887 0.859965256 0.865397804 0.765392316 1 21.28653144 -14 0.139653412 1.731716717 0.717180463 0.451781754 0.070301153 124.1706704 1.062203178 25.11315422 0.438449724 1.00E-14 14 -1.014536254 RMS(ph)DPPLSTMPTAPGLR ddPTM_HeLa_A485_30min_R1 1 RMSDPPLSTMPTAPGLR 17 1 P78314;P78314-3;P78314-4 P78314 SH3BP2 SH3 domain-binding protein 2 1 0 RMS(0.939)DPPLS(0.05)T(0.011)MPTAPGLR 47.564 0.032219 126740000 95665 128010 128760 123030 163010 120770 152800 158890 101030 136480 TRUE FALSE FALSE 116945.3492 142979.656 176393.6822 129750.8174 146780.152 127093.3305 120153.0317 119921.9784 121305.7943 102458.0477 1.141397399 1.395494635 1.721618614 1.26637995 1.432587828 1.240442633 1.172704677 1.170449575 1.183955746 1 16.64467378 -6.514630854 1.514591733 1.130866891 1.409891979 0.410759959 0.14628868 0.419731829 1.949261584 0.075362624 0.055791306 3.06E-07 6.514630854 0.279025088 RMS(ph)FQKPK ddPTM_HeLa_A485_30min_R1 1 RMSFQKPK 8 2 Q8N573-3;Q8N573-2;Q8N573-5;Q8N573-8;Q8N573;E5RII8 Q8N573-3 OXR1 Oxidation resistance protein 1 1 0 RMS(1)FQKPK 121.36 0.00031847 342270000 424890 444400 296560 494270 504090 515970 740710 809850 396160 690440 TRUE FALSE FALSE 519405.3146 496368.7142 406269.8849 521270.7185 453901.0296 542985.3914 582451.2575 611233.0177 475665.6782 518326.0146 1.00208228 0.957638051 0.783811488 1.005681181 0.875705669 1.047575032 1.123716042 1.179244338 0.917695938 1 18.98350028 -6.364358615 5.50163724 1.071734969 0.923793574 0.336292157 0.089001067 0.243728164 10.71601346 0.031377983 0.027551677 4.32E-07 6.364358615 -0.147941395 RMS(ph)FQKPK ddPTM_HeLa_A486_30min_R1 2 RMSFQKPK 8 2 Q8N573-3;Q8N573-2;Q8N573-5;Q8N573-8;Q8N573;E5RII8 Q8N573-3 OXR1 Oxidation resistance protein 1 1 0 RMS(1)FQKPK;RMS(1)FQKPK ; 136.02 0.00021332 830980000 1152420 1096570 585460 438290 978870 1141210 1370220 1433830 809870 1399610 TRUE FALSE FALSE 1071641.309 1009673.8 812165.7912 1020361.27 856090.997 1000419.113 1027376.463 1107378.209 880070.1837 1049138.546 1.0214488 0.962383665 0.774126348 0.972570566 0.815994227 0.953562441 0.979257189 1.05551189 0.8388503 1 20.00077378 -6.506057538 24.39536607 0.972084992 0.905910402 0.099369519 0.084838731 1184.013014 1717148.85 0.029938286 0.025745649 3.12E-07 6.506057538 -0.06617459 RMS(ph)GEPIQTVESIR ddPTM_HeLa_A485_30min_R1 2 RMSGEPIQTVESIR 14 1 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR ; 136.85 4.88E-06 386440000 128793 120550 155561 122090 156232 117452 120800 109203 132543 164202 TRUE FALSE FALSE 157442.5585 134647.2739 213109.4873 128759.4676 140676.9935 123601.6051 94990.09315 82420.79303 159143.1643 123269.4633 1.277222714 1.092300317 1.728810052 1.044536612 1.141215267 1.002694437 0.770589006 0.668622957 1.291018555 1 16.91145593 -5.873133854 1.618708029 0.91516956 1.327415989 0.350594069 0.225376455 0.397961009 2.153290772 0.084615338 0.103907898 1.34E-06 5.873133854 0.412246429 RMS(ph)GEPIQTVESIR ddPTM_HeLa_A486_30min_R1 3 RMSGEPIQTVESIR 14 1 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR ;; 106.98 0.00017788 586510000 119672 146400 147846 43954 169644 142140 152058 145229 125980 138468 TRUE FALSE FALSE 111283.6108 134798.7308 205095.9307 102327.1333 148365.6677 124604.212 114011.4801 112163.527 136900.0478 103794.7115 1.072151068 1.298705193 1.975976691 0.985860761 1.429414519 1.200487097 1.098432458 1.080628535 1.318950126 1 16.66337341 -6.240364504 1.345512344 1.127333186 1.38587106 0.139757294 0.259733327 0.866754381 3.178369834 0.123108616 0.113073088 5.75E-07 6.240364504 0.258537874 RMS(ph)GEPIQTVESIRVPGK ddPTM_HeLa_A485_30min_R1 1 RMSGEPIQTVESIRVPGK 18 2 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 RMS(1)GEPIQTVESIRVPGK 43.799 0.028945 145280000 81634 91308 76664 79253 100490 109390 142450 175710 81789 113240 TRUE FALSE FALSE 99793.20167 101985.6763 105025.2039 83582.39071 90484.86276 115117.4913 112014.3938 132616.847 98203.30209 85011.35203 1.173880891 1.199671266 1.235425638 0.983190935 1.064385645 1.354142576 1.317640422 1.559989858 1.155178688 1 16.37536788 -6.267040454 24.92434538 1.314905312 1.132663941 0.167550502 0.151672123 637.589462 2837213.54 0.051802665 0.046921165 5.41E-07 6.267040454 -0.182241371 RMS(ph)PKPELTEEQK ddPTM_HeLa_A485_30min_R1 3 RMSPKPELTEEQK 13 2 P41208 P41208 CETN2 Centrin-2 1 0 RMS(1)PKPELTEEQK;RMS(1)PKPELTEEQK;RMS(1)PKPELTEEQK ;; 280.15 4.44E-49 1088440000 881264 558817 342506 1558580 519836 635160 998281 707589 500647 2014030 TRUE FALSE FALSE 1077298.136 624165.7871 469213.2223 1643721.279 468079.3026 668415.9955 784990.1091 534051.6883 601122.2607 1511969.386 0.712513194 0.412816419 0.310332489 1.087139259 0.309582526 0.442083022 0.519183865 0.35321594 0.397575682 1 20.5279975 -10.41359527 5.824349981 1.000191342 0.501990609 0.303783259 0.224798877 0.000550038 5.54E-05 0.214347086 0.051967183 3.86E-11 10.41359527 -0.498200733 RMS(ph)PKPELTEEQK ddPTM_HeLa_A486_30min_R1 2 RMSPKPELTEEQK 13 2 P41208 P41208 CETN2 Centrin-2 1 0 RMS(1)PKPELTEEQK;RMS(1)PKPELTEEQK ; 240.79 2.63E-35 1512230000 1109850 1015140 334529 561970 541390 1275720 1394640 1092440 767700 2247060 TRUE FALSE FALSE 1032055.246 934696.6093 464067.5878 1308294.56 473483.8179 1118334.637 1045686.321 843715.2598 834244.8541 1684381.55 0.612720584 0.554919762 0.275512153 0.776721023 0.281102472 0.66394377 0.620813212 0.500905071 0.495282588 1 20.68378755 -10.83702017 2.594652549 1.177505792 0.529990568 0.469576987 0.149428582 20692543.19 13899710 22869657.71 0.034794417 1.46E-11 10.83702017 -0.647515224 RMS(ph)VGDR ddPTM_HeLa_A486_30min_R1 1 RMSVGDR 7 1 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 RMS(1)VGDR 58.699 0.023265 52731000 65997 78821 69350 23044 92769 63092 75605 80606 55704 67142 TRUE FALSE FALSE 61370.95111 72574.9369 96204.17726 53647.59658 81133.04698 55308.35051 56687.82933 62253.77342 60532.46757 50329.20618 1.219390405 1.442004403 1.911498006 1.065933692 1.612047023 1.098931509 1.126340621 1.236931359 1.202730426 1 15.61910822 -6.274670782 24.54626158 1.147379588 1.454003151 0.344886134 0.218095919 753.8337674 1398471.503 0.075542038 0.067013232 5.31E-07 6.274670782 0.306623563 RMSADMS(ph)EIEAR ddPTM_HeLa_A486_30min_R1 1 RMSADMSEIEAR 12 1 O43318-3;O43318;Q9UG54;O43318-4;O43318-2 O43318-3 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 0 RMS(0.442)ADMS(0.558)EIEAR 119.17 0.00028442 0 197380 214880 236090 79035 292960 179260 224750 242460 191060 192590 TRUE FALSE FALSE 183544.6813 197852.1262 327510.3707 183997.4742 256214.2251 157144.7238 168515.1728 187257.1509 207621.2346 144364.2104 1.271400167 1.370506759 2.268639642 1.27453663 1.774776617 1.088529652 1.167291895 1.297116164 1.438176637 1 17.1393536 -6.265872399 24.99604712 1.214859439 1.599625695 0.308461262 0.29414132 511.2297855 2882613.414 0.102142555 0.093129082 5.42E-07 6.265872399 0.384766256 RMSSEGPPRMS(ph)PK ddPTM_HeLa_A485_30min_R1 2 RMSSEGPPRMSPK 13 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 RMS(0.188)S(0.188)EGPPRMS(0.624)PK;RMSSEGPPRMS(1)PK ; 106.31 0.00018157 936470000 452750 576520 399240 531450 752420 702420 1077530 1278510 483440 801890 TRUE FALSE FALSE 553462.6755 643938.9989 546935.4898 560481.7678 677506.4229 739197.6251 847306.9129 964953.4179 580461.9736 601993.5807 0.919383019 1.069677517 0.908540402 0.931042765 1.125437953 1.227916125 1.407501575 1.602929747 0.964232829 1 19.19938858 -6.072244754 2.368780136 1.292103408 0.962289835 0.337248645 0.180065849 0.302176563 3.353273767 0.064115526 0.066840503 8.47E-07 6.072244754 -0.329813573 RMSSEGPPRMS(ph)PK ddPTM_HeLa_A486_30min_R1 2 RMSSEGPPRMSPK 13 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 RMS(0.125)S(0.172)EGPPRMS(0.703)PK;RMSSEGPPRMS(1)PK ; 88.133 0.001257 1179000000 662650 517710 349880 349710 694250 608390 950300 922970 388620 976220 TRUE FALSE FALSE 616201.6569 476684.7741 485362.9061 814142.5534 607170.6914 533333.0275 712524.8888 712829.8793 422305.8945 731768.1579 0.842072247 0.651415027 0.663274154 1.11256898 0.829730954 0.728827869 0.973703052 0.974119838 0.577103404 1 19.48102711 RMYS(ph)FDDVLEEGK ddPTM_HeLa_A485_30min_R1 1 RMYSFDDVLEEGK 13 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RMYS(1)FDDVLEEGK 154.49 2.01E-08 72229000 63951 57269 46102 76533 63203 57624 66131 55393 55167 90180 TRUE FALSE FALSE 78176.67932 63966.11138 63157.04826 80713.804 56910.2874 60641.10354 52001.57161 41807.7799 66238.51088 67699.78564 1.154755197 0.944849541 0.932898792 1.192231308 0.840627291 0.895735532 0.768120181 0.61754671 0.978415371 1 16.04686365 -5.864887706 9.338310173 0.828016489 1.039168772 0.37735339 0.127157768 0.299179162 24.65716625 0.039194137 0.044486971 1.36E-06 5.864887706 0.211152283 RMYS(ph)FDDVLEEGK ddPTM_HeLa_A486_30min_R1 2 RMYSFDDVLEEGK 13 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RMYS(1)FDDVLEEGK;RMY(0.004)S(0.996)FDDVLEEGK ; 147.06 4.76E-08 64138000 142013 145219 88469 54739 140744 156467 172569 189846 125865 212609 TRUE FALSE FALSE 132058.6221 133711.3176 122726.5661 127435.1584 123090.5751 137163.6924 129390.411 146622.2101 136775.0795 159370.3225 0.828627438 0.838997596 0.770071643 0.799616618 0.772355688 0.860660192 0.81188523 0.920009496 0.858221765 1 17.28202347 -8.014257662 0.59543788 0.999657531 0.802006868 0.741576336 0.033878021 0.433974843 0.364485087 0.035125044 0.015312557 9.68E-09 8.014257662 -0.197650663 RMYS(ph)FDDVLEEGKRPPTMTVSEASYQSER ddPTM_HeLa_A485_30min_R1 1 RMYSFDDVLEEGKRPPTMTVSEASYQSER 29 3 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RMYS(1)FDDVLEEGKRPPTMTVSEASYQSER 117.15 0.00058247 349280000 22169 22911 22107 20722 27165 28024 30354 35926 22243 22269 TRUE FALSE FALSE 27100.41757 25590.24215 30285.29925 21853.99039 24460.35722 29491.29331 23868.61993 27115.09217 26706.96608 16717.74813 1.621056697 1.530723035 1.811565709 1.307232901 1.463137082 1.764070919 1.427741329 1.621934483 1.59752174 1 14.02909291 -10.10048207 4.789217279 0.999973598 1.569451681 0.590016314 0.142949122 17310163.23 36507219.2 3230.10163 0.033743019 7.93E-11 10.10048207 0.569478082 RMYS(ph)FDDVLEEGKRPPTMTVSEASYQSER ddPTM_HeLa_A486_30min_R1 1 RMYSFDDVLEEGKRPPTMTVSEASYQSER 29 3 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RMYS(1)FDDVLEEGKRPPTMTVSEASYQSER 116.14 0.00011336 324370000 178630 120420 76346 77212 157090 157150 228870 225820 123640 266120 TRUE FALSE FALSE 166108.9594 110877.4806 105909.2158 179753.4381 137386.3074 137762.4308 171604.3053 174405.7156 134357.2148 199481.8198 0.832702246 0.555827497 0.530921644 0.901101856 0.688715932 0.690601434 0.86025035 0.874293787 0.673531126 1 17.60589774 -14 0.091806953 1.897013906 0.51363544 0.325674208 0.121088972 235.809349 1.496009925 40.85268551 2.715487377 1.00E-14 14 -1.383378467 RNAET(ph)PEATTQQETDTDLPEAPPPPLEPAVIAR ddPTM_HeLa_A486_30min_R1 1 RNAETPEATTQQETDTDLPEAPPPPLEPAVIAR 33 1 Q8N163-2;Q8N163;G3V119;H0YB24 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 RNAET(0.999)PEAT(0.001)T(0.001)QQETDTDLPEAPPPPLEPAVIAR 131.4 1.95E-06 108520000 67971 76401 69313 32182 79447 93745 79329 88588 64811 89461 TRUE FALSE FALSE 63206.5839 70346.70651 96152.84987 74921.32239 69482.01645 82179.69503 59480.04514 68418.44626 70428.86966 67059.38331 0.942546453 1.049021077 1.433846318 1.117238464 1.036126684 1.225476451 0.886975725 1.020266559 1.050246307 1 16.0331516 -6.757370157 24.99869089 0.991061031 1.138590853 0.230322367 0.12938526 166.8679104 1025138.779 0.05303952 0.039547286 1.75E-07 6.757370157 0.147529822 RNAETPEAT(ph)TQQETDTDLPEAPPPPLEPAVIARPGCVNLSLHGIVEDR ddPTM_HeLa_A486_30min_R1 1 RNAETPEATTQQETDTDLPEAPPPPLEPAVIARPGCVNLSLHGIVEDR 48 2 Q8N163-2;Q8N163;G3V119;H0YB24 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 RNAET(0.207)PEAT(0.396)T(0.396)QQET(0.002)DTDLPEAPPPPLEPAVIARPGCVNLSLHGIVEDR 103.54 6.44E-07 253870000 45354 42246 45117 2176.9 64058 32045 41648 43265 36583 24312 TRUE FALSE FALSE 42174.91881 38898.2731 62587.51068 5067.933214 56023.24832 28091.61371 31227.22989 33414.50397 39754.0439 18224.11696 2.314236619 2.134439391 3.434323365 0.278089371 3.074126909 1.541452668 1.713511276 1.833532129 2.18139754 1 14.15356129 -8.61247311 0.099180955 3.73E-10 3.171963221 0.152581587 0.803643223 50.85058117 2.089024 40.07629862 23.89355903 2.44E-09 8.61247311 3.17196322 RNALFPEVFS(ph)PTPDENSDQNSR ddPTM_HeLa_A485_30min_R1 3 RNALFPEVFSPTPDENSDQNSR 22 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RNALFPEVFS(0.976)PT(0.024)PDENSDQNSR;RNALFPEVFS(0.989)PT(0.011)PDENSDQNSR;RNALFPEVFS(0.999)PT(0.001)PDENSDQNSR ;; 149.16 8.17E-10 775716000 272661 355477 319101 292189 437843 330409 450060 508703 303426 445725 TRUE FALSE FALSE 333313.4988 397046.9429 437149.7388 308150.5452 394249.8136 347708.7043 353901.0043 383942.7916 364320.815 334613.9605 0.996113546 1.186582121 1.306430067 0.920913595 1.178222848 1.039133884 1.057639687 1.147420123 1.088779483 1 18.35213811 -5.257845385 24.99973673 1.071614394 1.165395916 0.179241567 0.097720092 594.9534337 4138465.019 0.026323355 0.043449786 5.52E-06 5.257845385 0.093781521 RNALFPEVFS(ph)PTPDENSDQNSR ddPTM_HeLa_A486_30min_R1 2 RNALFPEVFSPTPDENSDQNSR 22 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RNALFPEVFS(0.946)PT(0.054)PDENSDQNSR;RNALFPEVFS(0.997)PT(0.003)PDENSDQNSR ; 207.88 2.59E-27 614460000 417230 489210 427700 226617 616720 478970 606690 534810 389700 495630 TRUE FALSE FALSE 387984.3316 450443.2179 593316.8942 527575.8286 539365.2269 419879.5512 454889.7451 413045.4378 423479.5098 371521.022 1.044313265 1.21242996 1.596994138 1.420043005 1.451775795 1.130163642 1.224398401 1.111768684 1.139853426 1 18.50308432 -6.277447498 23.83318745 1.134669933 1.355896417 0.364509782 0.146922183 551.9999947 821824.5938 0.055477087 0.049104754 5.28E-07 6.277447498 0.221226484 RNDDIS(ph)ELEDLS(ph)ELEDLKDAK ddPTM_HeLa_A486_30min_R1 1 RNDDISELEDLSELEDLKDAK 21 2 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 RNDDIS(1)ELEDLS(1)ELEDLKDAK 90.518 0.0040136 67141000 161700 163930 57511 151550 141960 223510 337400 296960 117220 392970 TRUE FALSE FALSE 150365.665 150939.5898 79780.7994 352816.0589 124154.0531 195935.6087 252978.9513 229348.6906 127380.724 294567.7542 0.510462068 0.512410431 0.270840234 1.197741619 0.421478764 0.665163128 0.858814136 0.778594016 0.432432682 1 18.16823998 -8.56757472 0.06680351 1.586195154 6.36E-20 0.176326471 0.250596878 98.73330809 2.73305623 37.1869076 26.38060739 2.71E-09 8.56757472 -1.586195154 RNDDIS(ph)ELEDLSELEDLKDAK ddPTM_HeLa_A486_30min_R1 3 RNDDISELEDLSELEDLKDAK 21 2 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 RNDDIS(0.5)ELEDLS(0.5)ELEDLKDAK;RNDDIS(0.938)ELEDLS(0.062)ELEDLKDAK;RNDDIS(0.961)ELEDLS(0.039)ELEDLKDAK ;; 191.18 1.11E-19 243120000 106562.3 103996 46880.4 83270.2 96085.8 146575 193862 189387 82993.6 214287 TRUE FALSE FALSE 99092.83306 95754.97821 65033.74638 193857.2338 84033.823 128492.0668 145355.6771 146267.7144 90187.55207 160628.1404 0.6169083 0.596128287 0.404871439 1.206869689 0.523157541 0.79993497 0.904920375 0.910598317 0.561467946 1 17.29336514 -5.218171349 24.99997557 0.827477891 0.544985244 0.337676296 0.194463322 566.4492888 327289.7449 0.050491585 0.087453302 6.05E-06 5.218171349 -0.282492647 RNDDISELEDLS(ph)ELEDLKDAK ddPTM_HeLa_A485_30min_R1 6 RNDDISELEDLSELEDLKDAK 21 2 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK ;;;;; 254.85 4.23E-59 429115000 312309 216504.6 138063.3 579479 324920 296586 573526 543521 228932 742354 TRUE FALSE FALSE 381781.0596 241822.9296 189138.66 611134.4705 292569.8239 312114.7844 450987.4848 410221.6225 274876.5525 557298.8098 0.685056298 0.433919695 0.339384647 1.096601069 0.524978376 0.560049257 0.809238198 0.736089178 0.493230109 1 19.08809155 -14 0.164784592 2.333536007 0.544509165 0.215695444 0.206602068 213.104299 1.983064136 93.6448177 0.823620148 1.00E-14 14 -1.789026842 RNDDISELEDLS(ph)ELEDLKDAK ddPTM_HeLa_A486_30min_R1 4 RNDDISELEDLSELEDLKDAK 21 2 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK ;;; 290.05 3.37E-87 287416000 281476 252132 89396.9 209523 215896 338461 516677 437323 204573 577481 TRUE FALSE FALSE 261745.9859 232152.1421 124013.7738 487780.1327 188816.3105 296705.123 387398.9497 337754.0996 222305.5524 432875.9988 0.604667357 0.536301719 0.286487988 1.126835708 0.436190297 0.685427522 0.894942087 0.78025601 0.513554812 1 18.72359429 -12.42176256 0.053704331 2.10992093 1.94E-15 0.197793902 0.224138328 588.8619415 3.122843136 110.4086546 32.53525792 3.79E-13 12.42176256 -2.10992093 RNDFQLIGIQDGYLSLLQDSGEVR ddPTM_HeLa_A485_30min_R1 4 RNDFQLIGIQDGYLSLLQDSGEVR 24 1 I3L397;I3L504;P63241;P63241-2 I3L397 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 0 0 ;;; ;;; 255.12 5.78E-60 172943000 63396.9 95897.3 84730.2 69033.8 98074.4 92046.8 123889.8 125345.4 68399.6 104963.2 FALSE FALSE TRUE 77499.32169 107111.655 116075.4269 72804.94169 88309.76838 96866.22812 97419.73214 94604.24412 82126.77232 78797.80594 0.983521315 1.359322811 1.473079428 0.923946306 1.120713544 1.229301082 1.23632544 1.200594902 1.042246943 1 16.26586784 -7.824642519 4.104393964 1.004095669 1.197899706 0.166822677 0.152138085 0.386088569 12.03814935 0.146990833 0.039667963 1.50E-08 7.824642519 0.193804036 RNDFQLIGIQDGYLSLLQDSGEVR ddPTM_HeLa_A486_30min_R1 4 RNDFQLIGIQDGYLSLLQDSGEVR 24 1 I3L397;I3L504;P63241;P63241-2 I3L397 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 0 0 ;;; ;;; 249.78 8.31E-60 151258000 60355.6 76748.3 77888.3 42856.7 114437.9 80184.4 98165.7 95975.4 78811.5 96631.6 FALSE FALSE TRUE 56124.98412 70666.4852 108048.7357 99772.56346 100084.0315 70292.06398 73603.60357 74123.89655 85642.94428 72434.41839 0.774838611 0.975592636 1.49167672 1.377419267 1.381719267 0.97042353 1.016141293 1.023324245 1.182351514 1 16.14438776 -6.284268767 24.60749942 1.038511704 1.213801593 0.136231335 0.202275519 1450.447281 1563412.579 0.078669196 0.069428339 5.20E-07 6.284268767 0.175289889 RNDS(ph)EEEERER ddPTM_HeLa_A485_30min_R1 2 RNDSEEEERER 11 2 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 RNDS(1)EEEERER;RNDS(1)EEEERER ; 154.69 1.72E-07 217590000 106046 131341 118789 83721 92265 117781 127523 137307 91582 97257 TRUE FALSE FALSE 129635.5668 146700.1874 162733.9943 88294.46624 83078.77264 123947.831 100276.6693 103632.243 109961.6674 73012.61978 1.775522742 2.009244263 2.22884749 1.209304179 1.137868671 1.697622019 1.373415576 1.419374394 1.506063852 1 16.15585823 -1 0.172538173 1.070204704 5.035802367 0.43599291 0.279082238 59.87020681 0.654050769 0.751924803 61.55088936 0.1 1 3.965597664 RNDS(ph)EEEERER ddPTM_HeLa_A486_30min_R1 2 RNDSEEEERER 11 2 Q9Y5B6-2;Q9Y5B6;Q9Y5B6-3;Q9Y5B6-4 Q9Y5B6-2 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 RNDS(1)EEEERER;RNDS(1)EEEERER ; 104.45 0.00034577 168343000 99267 96791 74089 23366.8 72442 69828 71097 71111 80567 107599 TRUE FALSE FALSE 92308.89592 89120.92865 102778.245 54399.09129 63355.64887 61213.33132 53307.77861 54920.57764 87550.61243 80655.51005 1.144483444 1.104957722 1.274286715 0.674462182 0.785509246 0.758947917 0.660931641 0.680927783 1.085488299 1 16.29948548 -5.261145164 24.99999521 0.784379904 1.167614147 0.594266648 0.138444941 17.007376 1445089.942 0.037473843 0.06004025 5.48E-06 5.261145164 0.383234243 RNDS(ph)IYEASSLYGISAMDGVPFTLHPR ddPTM_HeLa_A486_30min_R1 2 RNDSIYEASSLYGISAMDGVPFTLHPR 27 1 E9PLZ8;Q96EY5;M0QZK6;E9PQA6;Q96EY5-2;Q96EY5-3 E9PLZ8 MVB12A Multivesicular body subunit 12A 1 0 RNDS(1)IYEASSLYGISAMDGVPFTLHPR;RNDS(0.999)IYEAS(0.001)SLYGISAMDGVPFTLHPR ; 219.77 3.05E-38 252190000 47699 78493 88237 40184 98240 96014 123867 136422 90013 98162 TRUE FALSE FALSE 44355.54642 72272.92881 122404.7295 93550.38279 85917.82315 84168.76888 92874.16647 105361.6887 97815.39931 73581.59627 0.602807613 0.982214745 1.663523703 1.271382894 1.1676537 1.143883432 1.262192874 1.431902731 1.329345981 1 16.16705735 -4.516113945 5.90875779 1.291878622 0.683347208 0.607642798 0.170450911 0.092660946 12.64501792 0.043553805 0.142633265 3.05E-05 4.516113945 -0.608531414 RNDSIIVDIFHGLFK ddPTM_HeLa_A485_30min_R1 2 RNDSIIVDIFHGLFK 15 1 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 Q9Y4E8-2;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 0 0 ; ; 142.97 9.21E-07 11048200 25681 26464 22333.2 20935 24315.7 25275 31045 35872 16418.8 30833 FALSE FALSE TRUE 31393.64985 29558.73459 30595.18004 22078.62604 21894.74353 26598.35992 24411.98214 27074.33575 19713.90256 23146.90054 1.356278773 1.277006161 1.321783018 0.953848054 0.945903902 1.149111082 1.054654471 1.169674346 0.851686494 1 14.4985314 -5.253000349 24.82332587 1.028915785 1.314221031 0.694802798 0.091052643 333.5909924 981252.0009 0.024842427 0.042109477 5.58E-06 5.253000349 0.285305247 RNDSIIVDIFHGLFK ddPTM_HeLa_A486_30min_R1 2 RNDSIIVDIFHGLFK 15 1 Q9Y4E8-2;Q9Y4E8-3;Q9Y4E8 Q9Y4E8-2;Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 0 0 ; ; 139.58 1.15E-06 7590900 28007 21480 12822.1 10575.9 22685.7 22246.8 25311 22604.8 17093.9 27810 FALSE FALSE TRUE 26043.85393 19777.84657 17787.16051 24621.22968 19840.24797 19502.216 18977.92009 17458.1805 18575.61302 20846.19499 1.249333701 0.948750915 0.853256938 1.181089868 0.951744334 0.935528811 0.910378134 0.837475641 0.891079309 1 14.34749646 -5.987477384 24.79202097 0.908806234 1.039508538 0.268869997 0.110196934 311.6815523 617056.6517 0.034513782 0.039110364 1.03E-06 5.987477384 0.130702304 RNEES(ph)DDDLDFDIDLEDTGGDHQMN ddPTM_HeLa_A485_30min_R1 2 RNEESDDDLDFDIDLEDTGGDHQMN 25 1 Q96MD7-1 Q96MD7-1 1 0 RNEES(1)DDDLDFDIDLEDTGGDHQMN;RNEES(1)DDDLDFDIDLEDTGGDHQMN ; 231.44 4.92E-39 669030000 184722 199617 199775 175573 277430 214808 264400 291010 199189 259430 TRUE FALSE FALSE 225812.7716 222960.4717 273680.0858 185164.1084 249808.0951 226055.0147 207908.7801 219639.3412 239164.4052 194758.8755 1.159447913 1.144802624 1.405225231 0.950735149 1.282653201 1.160691723 1.067518898 1.1277501 1.228002599 1 17.57132955 -14 0.177396323 0.333341004 1.203596809 0.161077932 0.115306605 245.2670799 2.348776655 57.75639308 0.361405894 1.00E-14 14 0.870255805 RNEES(ph)DDDLDFDIDLEDTGGDHQMN ddPTM_HeLa_A486_30min_R1 2 RNEESDDDLDFDIDLEDTGGDHQMN 25 1 Q96MD7-1 Q96MD7-1 1 0 RNEES(1)DDDLDFDIDLEDTGGDHQMN;RNEES(1)DDDLDFDIDLEDTGGDHQMN ; 266.81 3.11E-62 1059740000 386068 281163 261797 138102 327902 302863 355440 338983 276844 342406 TRUE FALSE FALSE 359006.6269 258882.6199 363171.8096 321508.4353 286773.4736 265498.8423 266505.1525 261803.9708 300841.0608 256665.3089 1.398734517 1.00863892 1.414962587 1.252636894 1.117305158 1.034416546 1.038337256 1.020020867 1.17211423 1 17.96952879 -5.868144348 3.385280351 1.054890462 1.261594077 0.453797129 0.111885401 0.230624311 5.190136989 0.034853589 0.04065356 1.35E-06 5.868144348 0.206703615 RNEIDAEPPAK(ac)R ddPTM_HeLa_A486_30min_R1 1 RNEIDAEPPAKR 12 2 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 1 RNEIDAEPPAK(1)R 115.12 0.0070284 36061000 28551 31772 29006 12253 38398 28588 30485 33557 29417 36902 FALSE TRUE FALSE 26549.72234 29254.27101 40237.90001 28525.60323 33581.76479 25061.10322 22857.33056 25916.80364 31966.88925 27661.49901 0.959807794 1.057580827 1.454653632 1.031238518 1.214025487 0.905992232 0.826322917 0.936926941 1.155645587 1 14.75559172 -6.264604435 24.96249272 0.952369551 1.149743988 0.265498428 0.147506697 370.4404197 2921617.866 0.052286939 0.048059097 5.44E-07 6.264604435 0.197374437 RNELVIR ddPTM_HeLa_A485_30min_R1 5 RNELVIR 7 1 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ;;;; ;;;; 130.27 0.00063542 499869000 206941.6 300129.1 285896.8 196991 338274 269314.5 318609.3 386772.1 251152.7 303616 FALSE FALSE TRUE 252975.045 335226.5875 391661.9235 207752.1195 304594.2528 283415.3908 250535.8203 291915.636 301556.7432 227930.1188 1.109879845 1.470742828 1.718342119 0.91147287 1.336349291 1.243431067 1.099178211 1.280724274 1.323022796 1 17.79823205 -5.261971739 24.99999975 1.189259107 1.436763703 0.283454439 0.189531427 65.92747477 3096073.409 0.052064849 0.082764549 5.47E-06 5.261971739 0.247504596 RNELVIR ddPTM_HeLa_A486_30min_R1 3 RNELVIR 7 1 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ;; ;; 116.73 0.00065118 197760000 114193.7 115329.9 99663.1 42536.3 168538.6 109319.4 118604.2 136811 101517.9 122899.5 FALSE FALSE TRUE 106189.3113 106190.7387 138255.3214 99026.65607 147398.9172 95832.68391 88928.17469 105662.1219 110317.5533 92124.66526 1.152669712 1.152685205 1.500741642 1.074920118 1.59999406 1.040250009 0.965302554 1.146947146 1.197481185 1 16.49129985 RNENLQLGPLGRDPPQECSTFSPTDSGEEPGQLS(ph)PGVQFQR ddPTM_HeLa_A486_30min_R1 1 RNENLQLGPLGRDPPQECSTFSPTDSGEEPGQLSPGVQFQR 41 2 A0A0A0MSJ6;Q07002;Q07002-3 A0A0A0MSJ6 CDK18 Cyclin-dependent kinase 18 1 0 RNENLQLGPLGRDPPQECSTFS(0.001)PT(0.001)DS(0.002)GEEPGQLS(0.996)PGVQFQR 49.052 0.0089028 83438000 38309 46618 32097 19604 58428 40071 52571 52929 34906 55738 TRUE FALSE FALSE 35623.73693 42923.8199 44525.81799 45639.10273 51099.41542 35127.44743 39417.17976 40878.22213 37931.68018 41780.84201 0.852633294 1.027356507 1.065699394 1.092345212 1.223034601 0.840754895 0.943427128 0.978396322 0.907872565 1 15.35055395 -6.287562037 24.99566783 0.933323525 1.053811617 0.285566401 0.093397694 1060.184409 1014441.599 0.034134189 0.030113637 5.16E-07 6.287562037 0.120488092 RNFGVS(ph)QER ddPTM_HeLa_A485_30min_R1 2 RNFGVSQER 9 1 E7EPB1;E7EQS8;Q6N021-2;Q6N021-3;Q6N021 E7EPB1 TET2 Methylcytosine dioxygenase TET2 1 0 RNFGVS(1)QER;RNFGVS(1)QER ; 75.378 0.0066438 1308740000 868990 961660 840470 465440 1107380 553130 380930 390800 314820 218147 TRUE FALSE FALSE 1062293.828 1074117.772 1151394.828 490865.8086 997125.359 582091.0315 299541.1936 294955.6872 378001.4863 163766.9676 6.486618413 6.558818225 7.030690284 2.997343212 6.088684266 3.554386089 1.829069671 1.80106948 2.308166853 1 17.32128486 -6.149636321 0.55518923 1.124185269 7.096969337 0.789634693 1.014044909 0.423612392 0.28224222 0.851049391 1.142282282 7.09E-07 6.149636321 5.972784068 SSDNQWS(ph)ADEDEGQLS(ph)R ddPTM_HeLa_A486_30min_R1 1 SSDNQWSADEDEGQLSR 17 0 A8MV81 A8MV81 HIGD1C HIG1 domain family member 1C 2 0 S(0.24)S(0.265)DNQWS(0.494)ADEDEGQLS(1)R 60.278 0.00485 0 516220 320470 171890 19276 194000 103310 71611 132400 78568 71571 TRUE FALSE FALSE 480035.6438 295074.7901 238450.4114 44875.50216 169666.711 90564.66258 53693.17038 102255.4103 85378.3375 53649.15575 8.947683091 5.500082638 4.444625606 0.836462411 3.162523411 1.688091104 1.000820416 1.906002226 1.591419964 1 15.71126785 -4.186272859 0.830806138 1.512370475 14.0266491 0.910114528 0.742399806 0.703124353 0.346916901 0.265895275 8.343601791 6.51E-05 4.186272859 12.51427862 up RNGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_HeLa_A485_30min_R1 4 RNGAAGPHSPDPLLDEQAFGDLTDLPVVPK 30 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK ;;; 175.69 5.56E-15 976130000 454602 528308 366971 494927 530532 514335 705202 704696 367846 598653 TRUE FALSE FALSE 555726.6465 590089.0249 502728.8438 521963.6088 477710.3713 541264.7853 554529.8317 531868.2011 441669.3181 449419.8245 1.236542351 1.31300177 1.118617418 1.16141652 1.062949041 1.204363394 1.23387933 1.183455139 0.982754418 1 18.77770424 -1.160646858 0.022318092 1.93E-06 2.669465447 0.436374594 0.076684156 2569.091033 4.53924537 196.0575155 372.9127897 0.069080129 1.160646858 2.669463512 RNGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_HeLa_A486_30min_R1 4 RNGAAGPHSPDPLLDEQAFGDLTDLPVVPK 30 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;RNGAAGPHS(0.819)PDPLLDEQAFGDLT(0.181)DLPVVPK;RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK;RNGAAGPHS(1)PDPLLDEQAFGDLTDLPVVPK ;;; 135.45 1.23E-06 860029000 336977 289814 154137 116589 291147 271682 326646 341792 226382 392905 TRUE FALSE FALSE 313356.6525 266848.0832 213822.9743 271425.0841 254628.6284 238164.6371 244915.7159 263973.4229 246004.974 294519.0306 1.063960627 0.906046997 0.726007328 0.921587592 0.864557472 0.80865619 0.831578575 0.896286472 0.835277006 1 18.16800133 -4.31938005 3.86599632 0.854351423 1.073566696 0.433243326 0.069002553 0.182748155 4.929015212 0.016326489 0.099126505 4.79E-05 4.31938005 0.219215274 RNLDIERPTYTNLNR ddPTM_HeLa_A485_30min_R1 4 RNLDIERPTYTNLNR 15 2 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;C9JDS9;P68363;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 223.96 1.36E-26 981785000 178022 238574 199596 177611 262512 243422 296179 367368 192008 233678 FALSE FALSE TRUE 217622.3797 266473.154 273434.8663 187313.4392 236375.3835 256167.1995 232897.9371 277270.422 230542.2444 175426.3751 1.240533982 1.519002794 1.558687319 1.067760986 1.347433551 1.460254761 1.327610725 1.580551509 1.314182341 1 17.42050615 -8.025652847 24.06050714 0.999999993 1.390030965 0.381180996 0.147724836 1679.368958 1575124.972 0.143241666 0.036984839 9.43E-09 8.025652847 0.390030972 RNLDIERPTYTNLNR ddPTM_HeLa_A486_30min_R1 3 RNLDIERPTYTNLNR 15 2 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;F8VVB9;F8VQQ4;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;C9JDS9;P68363;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA1B;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 212.7 4.10E-26 792870300 232225.5 228884 180237 80098 303858 239879 280889 280196 229366 280854 FALSE FALSE TRUE 215947.6917 210746.3983 250029.5933 186472.1919 265745.2963 210285.1679 210607.6013 216401.4874 249247.6296 210526.3303 1.025751464 1.001045323 1.187640486 0.88574285 1.26229007 0.998854478 1.000386037 1.027906994 1.183926159 1 17.68364116 RNLES(ph)T(ph)VSQIEK ddPTM_HeLa_A485_30min_R1 2 RNLESTVSQIEK 12 1 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 2 0 RNLES(0.67)T(0.717)VS(0.613)QIEK;RNLES(0.691)T(0.708)VS(0.601)QIEK ; 64.394 0.015742 1410050000 309420 1713270 2875700 126930 1202880 1181690 592520 843970 1604390 214960 TRUE FALSE FALSE 378249.4115 1913622.023 3939541.098 133863.8645 1083117.044 1243561.461 465923.2616 636985.0342 1926376.357 161374.428 2.343924103 11.858273 24.41242485 0.829523402 6.711825763 7.706062703 2.88721867 3.947248904 11.93730866 1 17.30005246 -5.3288181 24.9999523 5.221248261 12.77081244 0.274462958 5.854565284 241.130956 89467.56442 1.652236809 2.450663569 4.69E-06 5.3288181 7.549564175 RNLES(ph)T(ph)VSQIEK ddPTM_HeLa_A486_30min_R1 1 RNLESTVSQIEK 12 1 Q13464;A0A0U1RQV4 Q13464 ROCK1 Rho-associated protein kinase 1 2 0 RNLES(0.671)T(0.729)VS(0.599)QIEK 61.409 0.020794 465880000 141530 432820 1294700 13220 858360 115110 122630 219990 386450 52462 TRUE FALSE FALSE 131609.4779 398521.7669 1796042.513 30776.8281 750696.4849 100908.8986 91946.67695 169903.0793 419947.7972 39325.17373 3.346697939 10.1340116 45.67157225 0.782624085 19.08946392 2.566012785 2.338112416 4.320466084 10.67885421 1 15.26316552 -6.264550213 24.82636945 4.273056797 16.31451779 0.196530872 11.72837216 432.3021367 3450022.789 4.083093795 3.753676263 5.44E-07 6.264550213 12.041461 RNPDTQWITKPVHK ddPTM_HeLa_A485_30min_R1 3 RNPDTQWITKPVHK 14 2 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 RPL15 60S ribosomal protein L15;Ribosomal protein L15 0 0 ;; ;; 92.935 0.0030507 379282000 75665 87603 70564 113685 109017 86438 127866 117323 81546 159997 FALSE FALSE TRUE 92496.41821 97847.40881 96668.56001 119895.3237 98162.8847 90963.76002 100546.3845 88549.35029 97911.53422 120112.6924 0.7700803 0.814630051 0.804815528 0.998190293 0.817256551 0.757320131 0.837100414 0.737218928 0.815163928 1 16.87402908 -5.972610675 24.99818294 0.810516846 0.849877499 0 0.087448193 824.4602588 752479.6339 0.026703433 0.030278047 1.07E-06 5.972610675 0.039360653 RNPGVVIYVNSRPCCVPR ddPTM_HeLa_A485_30min_R1 2 RNPGVVIYVNSRPCCVPR 18 2 H0YBU8;H0Y6Y8;B1AL05;Q8N983-4;Q8N983-3;Q8N983-2;Q8N983;Q8N983-6;Q8N983-7 H0YBU8 MRPL43 "39S ribosomal protein L43, mitochondrial" 0 0 ; ; 125.51 1.67E-06 27092000 13101.1 11022.8 12040.6 9237.3 15812.1 11128.6 14233.7 13787.3 8075.9 14348.9 FALSE FALSE TRUE 16015.3945 12311.82057 16494.91899 9741.910309 14237.7918 11711.27629 11192.55372 10405.94306 9696.659053 10771.9833 1.486763769 1.142948353 1.531279666 0.904374806 1.32174284 1.087197776 1.039042988 0.966019234 0.900173977 1 13.39499628 -5.411138146 0.41976442 0.929394929 1.504566203 0.49006542 0.156813441 1.878357502 0.508505422 0.135566943 0.496550233 3.88E-06 5.411138146 0.575171273 RNPNTQLSTS(ph)FDETYIKK ddPTM_HeLa_A485_30min_R1 1 RNPNTQLSTSFDETYIKK 18 2 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 RNPNTQLS(0.017)T(0.138)S(0.845)FDETYIKK 126.02 5.25E-06 356500000 240980 208680 122200 248730 289800 217600 309810 365720 159940 295170 TRUE FALSE FALSE 294585.1696 233083.3107 167406.8652 262317.4901 260946.4945 228993.1995 243616.5626 276026.5966 192038.4909 221589.5512 1.329418143 1.051869592 0.755481765 1.183799004 1.177611909 1.033411541 1.099404558 1.24566612 0.866640552 1 17.75753033 -7.780264242 24.99719408 0.933320257 1.097718904 0.179800119 0.148870665 528.7765085 702132.8146 0.14498868 0.037692211 1.66E-08 7.780264242 0.164398647 RNPNTQLSTS(ph)FDETYIKK ddPTM_HeLa_A486_30min_R1 1 RNPNTQLSTSFDETYIKK 18 2 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 RNPNTQLS(0.032)T(0.228)S(0.74)FDETYIKK 108.37 5.44E-05 253670000 316570 266850 185440 122690 309460 334940 393630 400460 236890 372310 TRUE FALSE FALSE 294380.0778 245703.8341 257247.3343 285628.5204 270644.6412 293618.5082 295139.6106 309284 257423.8159 279081.1527 1.054818912 0.880402821 0.921765342 1.023460444 0.969770401 1.052090066 1.05754046 1.108222454 0.922397709 1 18.09032517 -5.710085988 1.589979286 1.033559706 0.949702273 0.153695888 0.064161264 0.566430766 2.965967732 0.022762007 0.032240208 1.95E-06 5.710085988 -0.083857433 RNPS(ph)PDHSYK ddPTM_HeLa_A485_30min_R1 1 RNPSPDHSYK 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 RNPS(0.917)PDHS(0.081)Y(0.002)K 52.008 0.026714 352730000 238620 275470 223490 331610 368160 306140 416250 390860 280250 493300 TRUE FALSE FALSE 291700.1958 307683.8202 306168.2512 349725.0146 331504.6977 322169.017 327314.7871 295000.9722 336493.6044 370329.3885 0.787677686 0.830838248 0.826745758 0.944362034 0.895161734 0.869952607 0.883847724 0.796590768 0.908633273 1 18.49844952 -14 0.19292714 1.588684193 0.837552636 0.474612703 0.045914595 138.2388852 1.357041057 31.44250473 0.129777572 1.00E-14 14 -0.751131557 RNPS(ph)PDHSYK ddPTM_HeLa_A486_30min_R1 2 RNPSPDHSYK 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 RNPS(0.996)PDHS(0.004)YK;RNPS(1)PDHSYK ; 134.88 4.16E-05 334570000 303510 334930 206256 120936 299600 340000 364730 340810 316830 385310 TRUE FALSE FALSE 282235.5163 308388.927 286123.8469 281545.1198 262021.3743 298054.2569 273470.6963 263215.0028 344293.0795 288825.8681 0.977182266 1.067733057 0.990644809 0.974791911 0.907194969 1.031951393 0.946835885 0.911327661 1.19204378 1 18.13984043 -7.752631339 24.99999947 1.096021913 0.978071267 0.365334141 0.063250455 177.4887495 503778.8726 0.043012244 0.015709702 1.77E-08 7.752631339 -0.117950647 RNPS(ph)PDHSYKR ddPTM_HeLa_A485_30min_R1 4 RNPSPDHSYKR 11 2 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 RNPS(1)PDHSYKR;RNPS(0.997)PDHS(0.003)YKR;RNPS(0.995)PDHS(0.005)YKR;RNPS(1)PDHSYKR ;;; 131.24 1.77E-05 2859141000 844920 1044834 945852 926012 1434643 1217837 1552172 1737095 1022845 1295899 TRUE FALSE FALSE 1032869.539 1167018.247 1295762.015 976597.6908 1291804.906 1281601.062 1220537.772 1311069.728 1228120.609 972855.2286 1.06168884 1.199580588 1.331916586 1.003846885 1.327849065 1.317360512 1.254593424 1.347651417 1.262387839 1 19.89186561 -4.31527866 3.638506805 1.243537562 1.050608049 0.138258713 0.121978243 0.419421067 9.782616487 0.02972789 0.197582242 4.84E-05 4.31527866 -0.192929514 RNPS(ph)PDHSYKR ddPTM_HeLa_A486_30min_R1 4 RNPSPDHSYKR 11 2 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 RNPS(1)PDHSYKR;RNPS(0.995)PDHS(0.004)YKR;RNPS(1)PDHSYKR;RNPS(0.998)PDHS(0.002)YKR ;;; 105.17 0.00033359 4529100000 1206930 1120204 892499 513170 1450410 1107209 1422160 1471803 945618 1386567 TRUE FALSE FALSE 1122330.44 1031434.955 1238098.515 1194685.694 1268486.053 970612.8109 1066320.526 1136705.586 1027584.93 1039361.598 1.079826734 0.992373547 1.191210563 1.149441827 1.220447297 0.933854794 1.025937968 1.09365748 0.988669325 1 19.98726623 -6.266225994 24.99938441 1.015372138 1.124051435 0.421564636 0.068975892 485.9931276 2538221.698 0.025545592 0.023273131 5.42E-07 6.266225994 0.108679297 RNPSCGS(ph)DNDSVQPVRR ddPTM_HeLa_A486_30min_R1 1 RNPSCGSDNDSVQPVRR 17 2 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 RNPS(0.249)CGS(0.75)DNDS(0.001)VQPVRR 44.341 0.029376 37078000 28576 27732 36592 19709 42992 35086 32662 32373 29552 47793 TRUE FALSE FALSE 26572.96997 25534.41532 50761.40237 45883.54804 37599.54248 30757.44605 24489.62214 25002.3746 32113.59115 35825.32172 0.741737092 0.712747691 1.416914069 1.28075746 1.04952421 0.858539284 0.683584151 0.697896722 0.896393657 1 15.12869204 -6.336877917 4.015235355 0.792771993 1.056955165 0.188218986 0.217477752 0.381441247 11.80408478 0.087092326 0.076999549 4.60E-07 6.336877917 0.264183172 RNPSPDHS(ph)YK ddPTM_HeLa_A485_30min_R1 3 RNPSPDHSYK 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 RNPS(0.338)PDHS(0.662)YK;RNPS(0.001)PDHS(0.999)YK;RNPS(0.422)PDHS(0.578)YK ;; 119.39 0.00017562 1344580000 1386540 1290590 1159450 1866560 1671350 1377870 1859270 1587640 1367840 2490500 TRUE FALSE FALSE 1694971.039 1441513.274 1588378.804 1968525.446 1504944.526 1450013.143 1462021.776 1198268.801 1642352.941 1869664.184 0.906564427 0.77100117 0.849552993 1.052876481 0.804927718 0.775547371 0.781970253 0.640900548 0.878421352 1 20.83434774 -5.969122371 24.9939394 0.790770074 0.88864648 0.098661858 0.108116241 379.0229311 306799.0887 0.033149771 0.037587962 1.07E-06 5.969122371 0.097876407 RNPSPDHS(ph)YK ddPTM_HeLa_A486_30min_R1 1 RNPSPDHSYK 10 1 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 RNPS(0.099)PDHS(0.901)YK 92.151 0.0017141 406940000 807250 864460 498780 281850 791790 871130 1008700 928980 740620 1048800 TRUE FALSE FALSE 750665.9436 795957.0413 691920.9738 656161.0439 692476.3151 763658.8376 756312.5911 717471.5335 804817.5379 786173.6535 0.954834775 1.012444309 0.880112136 0.834626092 0.880818521 0.971361523 0.962017218 0.91261203 1.023714715 1 19.58448849 -6.281198739 23.79137883 0.967734117 0.91198278 0.253495238 0.052114317 789.5082664 950607.6807 0.020267227 0.017904555 5.23E-07 6.281198739 -0.055751337 RNS(ph)CNVGGGGGGFKHPAFK ddPTM_HeLa_A485_30min_R1 2 RNSCNVGGGGGGFKHPAFK 19 2 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 RNS(1)CNVGGGGGGFKHPAFK;RNS(1)CNVGGGGGGFKHPAFK ; 157.3 1.81E-09 1321480000 1596100 1345250 944180 1658260 1708930 1395970 1690240 1589190 1063310 1804700 TRUE FALSE FALSE 1951146.939 1502565.285 1293471.473 1748846.545 1538782.929 1469060.831 1329106.416 1199438.661 1276706.564 1354821.503 1.440150554 1.109050367 0.95471726 1.290831701 1.135782777 1.084320575 0.981019576 0.885311207 0.942343003 1 20.36967136 -6.620001783 1.885339729 0.933794971 1.17602627 0.457454766 0.120317825 0.33497112 2.425893983 0.0590739 0.04165029 2.40E-07 6.620001783 0.242231299 RNS(ph)CNVGGGGGGFKHPAFK ddPTM_HeLa_A486_30min_R1 2 RNSCNVGGGGGGFKHPAFK 19 2 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 RNS(1)CNVGGGGGGFKHPAFK;RNS(1)CNVGGGGGGFKHPAFK ; 172.49 4.07E-13 1223100000 864670 710680 362160 289850 725430 756920 864010 846040 577310 984140 TRUE FALSE FALSE 804061.0982 654363.1285 502398.051 674785.4482 634439.805 663538.9062 647825.5594 653415.1609 627351.6956 737704.9383 1.089949459 0.88702555 0.68102845 0.914709138 0.860018379 0.899463826 0.878163512 0.885740527 0.850410053 1 19.49268437 -10.50934466 4.55459907 1.000711677 0.877814002 0.122333306 0.093151187 0.000678974 7.31E-05 0.090971131 0.021937188 3.09E-11 10.50934466 -0.122897675 RNS(ph)DRS(ph)EDGYHS(ph)DGDYGEHDYR ddPTM_HeLa_A486_30min_R1 1 RNSDRSEDGYHSDGDYGEHDYR 22 2 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 3 0 RNS(0.991)DRS(0.992)EDGY(0.287)HS(0.729)DGDY(0.001)GEHDYR 56.533 0.027205 621610000 94783 113870 126390 33026 123650 107930 93854 101820 103370 72730 TRUE FALSE FALSE 88139.20116 104846.5265 175331.5928 76886.19704 108140.664 94614.69395 70370.73651 78637.80871 112330.1948 54517.93461 1.616701032 1.923156613 3.216035129 1.410291817 1.98357962 1.735478327 1.29078141 1.442420908 2.060426457 1 15.73444329 -5.974985405 1.347857587 1.504041811 2.155873039 0.225358486 0.507766292 0.66771319 2.514529933 0.215707206 0.248868714 1.06E-06 5.974985405 0.651831228 RNS(ph)DRS(ph)EDGYHS(ph)DGDYGEHDYRHDISDER ddPTM_HeLa_A485_30min_R1 2 RNSDRSEDGYHSDGDYGEHDYRHDISDER 29 3 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 3 0 RNS(0.961)DRS(0.973)EDGY(0.157)HS(0.907)DGDY(0.001)GEHDYRHDISDER;RNS(0.995)DRS(0.997)EDGY(0.009)HS(0.999)DGDYGEHDYRHDISDER ; 146.78 2.80E-09 3176500000 283889 397160 370949 303871 476240 357259 458350 554460 356770 390280 TRUE FALSE FALSE 347039.1286 443604.4072 508178.4716 320470.7033 428823.8734 375964.5288 360419.7781 418477.8156 428370.4665 292990.3786 1.184472781 1.514057934 1.734454469 1.093792584 1.463610769 1.283197526 1.230142027 1.428298832 1.462063255 1 18.16049376 -5.270075985 24.99433306 1.303690186 1.481301355 0.177448563 0.190148546 1164.343599 3369608.232 0.052468708 0.079222534 5.37E-06 5.270075985 0.177611169 RNS(ph)DRS(ph)EDGYHS(ph)DGDYGEHDYRHDISDER ddPTM_HeLa_A486_30min_R1 1 RNSDRSEDGYHSDGDYGEHDYRHDISDER 29 3 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 3 0 RNS(0.81)DRS(0.849)EDGY(0.547)HS(0.794)DGDYGEHDYRHDISDER 70.492 0.0048155 1160300000 189950 193670 189330 68619 303280 184740 210800 233810 187530 180090 TRUE FALSE FALSE 176635.4859 178322.8839 262643.6464 159748.4998 265239.7944 161948.6571 158055.6104 180576.567 203785.2514 134994.2918 1.308466332 1.320966105 1.945590757 1.183372257 1.964822296 1.199670408 1.170831805 1.33766076 1.50958421 1 17.04253888 RNS(ph)EGSELSCTEGSLTSSLDSR ddPTM_HeLa_A485_30min_R1 1 RNSEGSELSCTEGSLTSSLDSR 22 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 RNS(0.996)EGS(0.004)ELSCTEGSLTSSLDSR 223.44 3.20E-36 631480000 133310 157670 152700 116420 213530 165200 189820 174060 155040 210720 TRUE FALSE FALSE 162964.3496 176108.135 209190.0844 122779.7298 192270.2035 173849.6166 149263.4063 131371.5121 186155.1059 158191.382 1.030172109 1.113259981 1.322386098 0.776146768 1.2154278 1.098982854 0.943562187 0.830459349 1.176771475 1 17.27131148 -6.75365021 24.48701334 0.973569864 1.095288545 0.098062834 0.153559604 291.5760592 916638.8109 0.058064245 0.044092316 1.76E-07 6.75365021 0.121718681 RNS(ph)EGSELSCTEGSLTSSLDSR ddPTM_HeLa_A486_30min_R1 2 RNSEGSELSCTEGSLTSSLDSR 22 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 RNS(0.998)EGS(0.002)ELSCTEGSLTSSLDSR;RNS(0.61)EGS(0.389)ELS(0.001)CTEGSLTSSLDSR ; 220.92 3.97E-36 722760000 163357 156218 131767 44842 186656 169203 165556 184097 151558 196226 TRUE FALSE FALSE 151906.5179 143838.7167 182790.7112 104394.4422 163243.864 148328.4542 124132.1377 142182.1319 164695.1695 147089.7324 1.032747259 0.977897739 1.242715642 0.709733035 1.109825012 1.008421538 0.843921161 0.966635329 1.119691815 1 17.16633702 -5.220825789 24.99876333 0.966811507 1.073797814 0.149409876 0.129330911 1108.089028 682057.3343 0.034185259 0.059210105 6.01E-06 5.220825789 0.106986307 RNS(ph)FSENEK ddPTM_HeLa_A485_30min_R1 8 RNSFSENEK 9 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 RNS(0.984)FS(0.016)ENEK;RNS(0.997)FS(0.003)ENEK;RNS(0.963)FS(0.037)ENEK;RNS(0.994)FS(0.006)ENEK;RNS(0.992)FS(0.008)ENEK;RNS(0.996)FS(0.004)ENEK;RNS(1)FSENEK;RNS(0.788)FS(0.212)ENEK ;;;;;;; 213.59 2.22E-10 12264930000 4598410 4644850 3512610 5969430 5574040 4765360 7003010 6779150 3987800 7409620 TRUE FALSE FALSE 5621310.44 5188024.803 4812070.611 6295524.846 5019069.006 5014866.881 5506759.704 5116552.833 4788114.882 5562538.098 1.010565742 0.932672228 0.865085421 1.131771996 0.90229836 0.901542927 0.989972492 0.919823423 0.860778802 1 22.40731188 RNS(ph)FSENEK ddPTM_HeLa_A486_30min_R1 8 RNSFSENEK 9 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 RNS(0.973)FS(0.027)ENEK;RNS(0.882)FS(0.118)ENEK;RNS(0.696)FS(0.304)ENEK;RNS(0.936)FS(0.064)ENEK;RNS(0.864)FS(0.136)ENEK;RNS(0.869)FS(0.131)ENEK;RNS(1)FSENEK;RNS(1)FSENEK ;;;;;;; 223.55 2.19E-12 12081150000 5997600 5708390 3547330 2549860 5893410 6023490 7532220 7320970 4431980 7777270 TRUE FALSE FALSE 5577199.212 5256036.387 4920951.177 5936202.943 5154203.564 5280373.046 5647578.888 5654144.947 4816147.595 5829790.97 0.956672244 0.901582306 0.844104223 1.018253137 0.884114643 0.90575684 0.968744663 0.969870957 0.826126978 1 22.47501273 -10.28864773 3.311624979 1.000339717 0.921120728 0.152556781 0.056820633 43041895.77 60025902.04 148212.2885 0.013440852 5.14E-11 10.28864773 -0.079218989 RNS(ph)FTPLSSSNTIR ddPTM_HeLa_A485_30min_R1 3 RNSFTPLSSSNTIR 14 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 RNS(0.976)FT(0.024)PLSSSNTIR;RNS(0.997)FT(0.003)PLSSSNTIR;RNS(0.996)FT(0.004)PLSSSNTIR ;; 102.84 0.0002921 4296060000 1292490 1409220 1208770 1039070 1759600 1359560 1611250 1686760 1584260 1476380 TRUE FALSE FALSE 1579999.941 1574016.02 1655944.324 1095831.763 1584408.046 1430744.459 1266993.275 1273079.465 1902206.45 1108345.637 1.425548032 1.420149066 1.494068519 0.988709412 1.429525225 1.290882927 1.143139137 1.148630376 1.716257445 1 20.07997642 RNS(ph)FTPLSSSNTIR ddPTM_HeLa_A486_30min_R1 3 RNSFTPLSSSNTIR 14 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 RNS(0.994)FT(0.006)PLSSSNTIR;RNS(0.998)FT(0.002)PLSSSNTIR;RNS(0.999)FT(0.001)PLSSSNTIR ;; 113.73 0.00012243 3382020000 2637890 2908830 2293460 419954 3265550 2748110 2755880 3052580 2818830 1853770 TRUE FALSE FALSE 2452987.533 2678323.717 3181549.133 977674.1353 2855954.269 2409076.129 2066329.675 2357574.171 3063168.454 1389573.926 1.76528034 1.92744241 2.289586091 0.703578354 2.055273358 1.733679716 1.487023926 1.696616587 2.204394021 1 20.40621116 -10.41713861 3.174001876 0.989440941 1.749465437 0.225712781 0.423075913 65675390.85 85107568.08 6288851.049 0.109397034 3.83E-11 10.41713861 0.760024496 RNS(ph)GSSLVSSSSASSNLSHLEEDSWILWGR ddPTM_HeLa_A485_30min_R1 1 RNSGSSLVSSSSASSNLSHLEEDSWILWGR 30 1 O60447;O60447-2 O60447 EVI5 Ecotropic viral integration site 5 protein homolog 1 0 RNS(0.332)GS(0.332)S(0.332)LVS(0.002)S(0.001)SSASSNLSHLEEDSWILWGR 69.782 0.0025292 23736000 2654.1 3964.4 2854.3 2817.5 6725.4 4914.9 4017.5 8301.8 3804.3 2276 TRUE FALSE FALSE 3244.495388 4428.002094 3910.224347 2971.412891 6055.795562 5172.236564 3159.128305 6265.770533 4567.788115 1708.635087 1.898881402 2.591543466 2.28850758 1.739056463 3.5442299 3.027115974 1.848919251 3.667120371 2.673354978 1 10.7386286 -5.734575413 24.99989006 2.741269784 2.173858697 0.079520616 0.766084056 498.7207158 464112.5973 0.216211654 0.279049754 1.84E-06 5.734575413 -0.567411087 RNS(ph)LDGGGR ddPTM_HeLa_A485_30min_R1 4 RNSLDGGGR 9 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 RNS(1)LDGGGR;RNS(1)LDGGGR;RNS(1)LDGGGR;RNS(1)LDGGGR ;;; 123.75 0.00018415 2385078000 796926 935717 533405 874766 556569 964835 760599 1150703 913334 1095152 TRUE FALSE FALSE 974199.4393 1045140.963 730733.7063 922552.2516 501155.0361 1015352.269 598090.8101 868491.285 1096631.756 822150.7612 1.184940142 1.271227873 0.888807431 1.122120534 0.60956586 1.23499523 0.727470968 1.056364995 1.333857253 1 19.64904345 -4.753131618 24.98970873 0.988216583 1.228084095 0.165889774 0.206893735 301.5902547 907162.1342 0.050828006 0.129745556 1.77E-05 4.753131618 0.239867512 RNS(ph)LDGGGR ddPTM_HeLa_A486_30min_R1 2 RNSLDGGGR 9 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 RNS(1)LDGGGR;RNS(1)LDGGGR ; 107.17 0.00063228 1236420000 263095 163561 338280 106231 232341 395620 179830 182907 347080 274442 TRUE FALSE FALSE 244653.3991 150599.8307 469271.0755 247311.1366 203198.6253 346812.4268 134834.632 141263.0689 377165.1739 205719.9369 1.189254687 0.7320624 2.281116175 1.202173889 0.987743961 1.685847429 0.655428122 0.68667661 1.833391452 1 17.65032209 -6.759858485 24.99998339 1.017763822 1.338076866 0.081261222 0.494706198 114.9196625 1817365.65 0.19682628 0.14422649 1.74E-07 6.759858485 0.320313044 RNS(ph)LEGYSR ddPTM_HeLa_A485_30min_R1 2 RNSLEGYSR 9 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 RNS(1)LEGYSR;RNS(1)LEGYSR ; 170.22 3.71E-06 1817010000 676930 777320 794380 693760 997870 709370 791410 813490 741450 909300 TRUE FALSE FALSE 827510.7431 868220.8122 1088254.219 731658.3521 898518.5591 746511.5163 622318.7883 613980.302 890252.214 682628.2444 1.212242168 1.271879415 1.594212117 1.071825489 1.316263378 1.093584279 0.911651098 0.899435831 1.304153793 1 19.38074058 -6.363610055 3.654017016 1.018172082 1.297560386 0.384481333 0.159974224 0.255146268 6.270286384 0.05926375 0.051810299 4.33E-07 6.363610055 0.279388304 RNS(ph)LEGYSR ddPTM_HeLa_A486_30min_R1 3 RNSLEGYSR 9 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 RNS(1)LEGYSR;RNS(1)LEGYSR;RNS(1)LEGYSR ;; 212.1 1.21E-10 2609310000 720400 868740 746070 273800 873340 760370 865710 950060 736520 879450 TRUE FALSE FALSE 669903.6801 799897.8785 1034968.284 637420.2371 763797.5536 666563.2803 649100.2015 733752.0777 800362.1466 659229.9957 1.016191139 1.213382103 1.569965401 0.966916313 1.158620752 1.011124015 0.9846339 1.113044131 1.214086361 1 19.33042236 RNS(ph)LGGDVLFVGK ddPTM_HeLa_A485_30min_R1 1 RNSLGGDVLFVGK 13 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 RNS(1)LGGDVLFVGK 83.063 0.0021003 76525000 217590 254190 207220 258020 335620 271930 343000 388110 237890 358570 TRUE FALSE FALSE 265992.1448 283915.3093 283879.3011 272114.9793 302204.4944 286167.8343 269715.2479 292925.414 285632.3409 269185.098 0.988138448 1.054721496 1.054587729 1.010884262 1.122664281 1.063089437 1.001969462 1.088193277 1.061100124 1 18.03823902 -4.260763413 23.34264811 1.053531835 0.988138405 0.204631521 0.036708335 34.42382704 1188051.456 0.008888325 0.051570533 5.49E-05 4.260763413 -0.06539343 RNS(ph)LGGDVLFVGK ddPTM_HeLa_A486_30min_R1 2 RNSLGGDVLFVGK 13 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 0 RNS(1)LGGDVLFVGK;RNS(1)LGGDVLFVGK ; 130.27 1.24E-05 158887000 388040 400720 274802 162183 451260 413170 468810 487310 335790 465490 TRUE FALSE FALSE 360840.3998 368965.4878 381212.6939 377570.2203 394658.763 362197.2862 351508.7794 376360.1509 364896.5476 348928.2742 1.034139181 1.057425021 1.092524516 1.082085484 1.131059854 1.038027907 1.007395518 1.078617523 1.04576377 1 18.41257098 -6.456909459 24.99872396 1.037097545 1.07964129 0.351887604 0.030720148 247.8318577 93914.21403 0.011196351 0.009874248 3.49E-07 6.456909459 0.042543744 RNS(ph)LILKPKPDPAQQTDSQNSDTEQYFR ddPTM_HeLa_A485_30min_R1 1 RNSLILKPKPDPAQQTDSQNSDTEQYFR 28 3 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 RNS(0.998)LILKPKPDPAQQT(0.002)DSQNSDTEQYFR 301.18 1.44E-91 1061700000 577130 425680 311670 735460 595580 577320 845860 774060 486050 1029500 TRUE FALSE FALSE 705510.5774 475459.5731 426969.7027 775636.3175 536281.964 607547.5825 665135.101 584220.5713 583595.7767 772864.5965 0.912851463 0.615191296 0.552450849 1.003586296 0.69388864 0.786098348 0.86061013 0.755915815 0.755107401 1 19.55985616 -14 0.212635559 2.125062514 0.735120255 0.222802783 0.12723285 225.2906255 2.248990804 108.2970506 0.264869049 1.00E-14 14 -1.389942259 RNS(ph)LILKPKPDPAQQTDSQNSDTEQYFR ddPTM_HeLa_A486_30min_R1 2 RNSLILKPKPDPAQQTDSQNSDTEQYFR 28 3 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 RNS(0.964)LILKPKPDPAQQT(0.036)DSQNSDTEQYFR;RNS(0.996)LILKPKPDPAQQT(0.004)DSQNSDTEQYFR ; 239.98 4.13E-49 932970000 1216740 1041860 493500 455790 981580 1279500 1451130 1508780 826130 1447780 TRUE FALSE FALSE 1131452.809 959299.2192 684596.4164 1061102.154 858461.0835 1121648.299 1088041.926 1165263.73 897739.6136 1085246.465 1.042576821 0.883945952 0.630821144 0.977752233 0.791028685 1.033542458 1.002575877 1.073731884 0.827221873 1 20.04959129 -6.268838234 24.8976475 0.992970254 0.859494101 0.208055982 0.11868604 848.3212659 2854651 0.041260188 0.037115142 5.38E-07 6.268838234 -0.133476153 RNS(ph)LKELWLVIHGR ddPTM_HeLa_A486_30min_R1 1 RNSLKELWLVIHGR 14 2 J3QR91;D6RFH4;H3BUX2;O43169 J3QR91 CYB5B Cytochrome b5 type B 1 0 RNS(1)LKELWLVIHGR 44.511 0.03127 111700000 76524 63236 42824 38417 88757 63429 75152 75643 55691 80247 TRUE FALSE FALSE 71160.06277 58224.94906 59406.59967 89436.71749 77624.26943 55603.77488 56348.17472 58420.74018 60518.34072 60152.62888 1.182991734 0.967953523 0.987597729 1.486829739 1.290455145 0.924378135 0.936753319 0.971208429 1.006079732 1 15.87634017 -6.274077322 24.75878319 0.963951276 1.177214702 0.373984196 0.139246489 865.4066084 1695398.584 0.054597694 0.048482378 5.32E-07 6.274077322 0.213263426 RNS(ph)LPQIPMLNLEAR ddPTM_HeLa_A485_30min_R1 4 RNSLPQIPMLNLEAR 15 1 Q14289;H0YB74;Q14289-2 Q14289 PTK2B Protein-tyrosine kinase 2-beta 1 0 RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR ;;; 155.86 1.33E-08 1566750000 378049 489718 469714 367793 572232 461404 551844 611327 433492 568533 TRUE FALSE FALSE 462144.6958 546986.2601 643480.755 387884.6003 515258.5729 485562.4 433938.0212 461398.0947 520489.8682 426808.1862 1.082792483 1.281573967 1.50765795 0.908803094 1.207236856 1.137659529 1.01670501 1.081043217 1.219493639 1 18.70322832 -5.267922685 24.99979885 1.089811201 1.289764716 0.350160646 0.130203404 586.3964479 2261161.191 0.036281243 0.055235011 5.40E-06 5.267922685 0.199953515 RNS(ph)LPQIPMLNLEAR ddPTM_HeLa_A486_30min_R1 4 RNSLPQIPMLNLEAR 15 1 Q14289;H0YB74;Q14289-2 Q14289 PTK2B Protein-tyrosine kinase 2-beta 1 0 RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR;RNS(1)LPQIPMLNLEAR ;;; 220.1 8.87E-34 1739875000 297489 359049 272053 126669 405604 318317 353185 376221 290086 329178 TRUE FALSE FALSE 276636.5573 330596.6496 377399.2074 294891.8335 354729.3642 279046.285 264814.3774 290563.6911 315230.888 246749.6862 1.121122225 1.339805755 1.529482016 1.195105202 1.437608167 1.130888105 1.073210594 1.177564582 1.277533086 1 17.91268872 -6.282223773 24.25773722 1.139272736 1.329653502 0.369749963 0.12557502 635.374509 741551.2562 0.043909617 0.03876895 5.22E-07 6.282223773 0.190380766 RNS(ph)LQHHQDDTK ddPTM_HeLa_A485_30min_R1 2 RNSLQHHQDDTK 12 1 Q6ZU80;H0YJH2 Q6ZU80 CEP128 Centrosomal protein of 128 kDa 1 0 RNS(1)LQHHQDDTK;RNS(1)LQHHQDDTK ; 130.29 2.43E-05 202480000 281830 221550 148703 373690 184709 239990 278230 312860 209570 396730 TRUE FALSE FALSE 344522.1112 247458.3453 203714.4277 394103.7385 166318.7234 252555.5053 218783.8876 236130.5945 251628.7767 297832.5123 1.156764614 0.83086411 0.683989891 1.323239479 0.558430381 0.847978293 0.734586986 0.792830147 0.844866716 1 18.18414173 -4.260653939 22.01065841 0.837231637 1.156765127 0.185897121 0.194070113 20.26999831 567398.3918 0.046148623 0.268200239 5.49E-05 4.260653939 0.31953349 RNS(ph)LTGEEGQLAR ddPTM_HeLa_A485_30min_R1 2 RNSLTGEEGQLAR 13 1 Q9BX95 Q9BX95 SGPP1 Sphingosine-1-phosphate phosphatase 1 1 0 RNS(1)LTGEEGQLAR;RNS(1)LTGEEGQLAR ; 227.09 7.11E-28 1675290000 387370 381770 384320 351120 433560 419440 453150 589920 411390 718000 TRUE FALSE FALSE 473539.1201 426414.6805 526495.9609 370300.7965 390393.2441 441401.2298 356330.8006 445241.195 493952.1995 539015.8138 0.878525468 0.791098646 0.976772754 0.686994309 0.724270483 0.818902189 0.66107671 0.82602622 0.916396489 1 19.03996807 -7.880296016 2.684722913 0.995690991 0.790325485 0.379247175 0.087037694 0.266313984 3.847561295 0.084646139 0.023182887 1.32E-08 7.880296016 -0.205365506 RNS(ph)LTGEEGQLAR ddPTM_HeLa_A486_30min_R1 2 RNSLTGEEGQLAR 13 1 Q9BX95 Q9BX95 SGPP1 Sphingosine-1-phosphate phosphatase 1 1 0 RNS(1)LTGEEGQLAR;RNS(1)LTGEEGQLAR ; 202.26 9.84E-22 1152080000 513880 521840 472860 116953 674560 474640 512860 462880 470750 447950 TRUE FALSE FALSE 477859.6657 480487.4979 655964.0556 272272.4945 589950.3948 416083.7426 384537.0035 357492.3286 511554.989 335780.4043 1.423131486 1.43095753 1.953550735 0.810864753 1.756953018 1.239154332 1.145203825 1.064661082 1.52348077 1 18.35715851 -6.105119056 0.669825074 1.16369285 1.533938251 0.151610162 0.308030107 1.509649978 1.502900814 0.21804602 0.268774417 7.85E-07 6.105119056 0.3702454 RNS(ph)NS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_A485_30min_R1 2 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 3 0 RNS(0.995)NS(0.868)PPS(0.983)PS(0.136)S(0.018)MNQR;RNS(0.997)NS(0.595)PPS(0.989)PS(0.379)S(0.041)MNQR ; 167.93 3.80E-12 1332340000 705120 870940 780360 846830 1070300 868330 1121700 1179490 791700 1063550 TRUE FALSE FALSE 861971.5114 972788.8568 1069047.637 893090.1786 963737.1739 913794.4161 882039.6316 890218.2281 950586.9281 798426.5582 1.079587725 1.218382388 1.338942983 1.118562715 1.207045487 1.144494014 1.10472231 1.114965702 1.190575286 1 19.60680018 -6.3863373 1.352694447 1.108398386 1.203285168 0.223516517 0.077323629 0.70094164 2.595244125 0.038963941 0.031667331 4.11E-07 6.3863373 0.094886782 RNS(ph)NSPPS(ph)PS(ph)SMNQR ddPTM_HeLa_A486_30min_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 3 0 RNS(0.968)NS(0.045)PPS(0.988)PS(0.633)S(0.366)MNQR 250.2 5.72E-42 558300000 456910 471370 341780 177100 479680 469390 552670 520350 397530 525870 TRUE FALSE FALSE 424882.9685 434016.9245 474126.3692 412297.7501 419514.0616 411481.4342 414386.1205 401877.6642 431988.2205 394188.7292 1.077866862 1.101038392 1.202790273 1.045939977 1.064246719 1.043869101 1.051237871 1.01950572 1.095891862 1 18.588527 -5.358521153 25 1.047538403 1.124619103 0.488291508 0.038138214 39.04028236 10048.77763 0.010468812 0.015527758 4.38E-06 5.358521153 0.077080701 RNS(ph)NSPPS(ph)PSS(ph)MNQR ddPTM_HeLa_A486_30min_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 3 0 RNS(0.951)NS(0.051)PPS(0.998)PS(0.012)S(0.988)MNQR 241.13 2.88E-41 521460000 393450 394130 298040 133890 444150 387520 431530 453290 355650 451510 TRUE FALSE FALSE 365871.1868 362897.7034 413449.0698 311702.6864 388440.5655 339711.7224 323556.6297 350085.7623 386478.0284 338448.9572 1.081023236 1.072237617 1.221599479 0.92097399 1.14770797 1.003731036 0.955998306 1.034382748 1.141909349 1 18.36857875 -5.258038007 24.99894816 1.031497096 1.119681851 0.243128213 0.077146136 465.9222951 3424358.7 0.020925184 0.034387878 5.52E-06 5.258038007 0.088184756 RNS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSK ddPTM_HeLa_A486_30min_R1 3 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSK 30 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSK;RNS(0.999)PMAQT(0.996)PPCHLPNIPGVT(0.002)S(0.002)PGT(0.001)LIEDSK ;; 141.49 1.08E-09 387520000 237953 236724 125901 82085 194821 246796 266531 240191 198480 321193 TRUE FALSE FALSE 221273.7235 217965.1281 174653.2389 191098.0283 170384.7335 216348.8188 199842.1247 185504.7526 215684.4062 240764.1822 0.919047516 0.905305458 0.72541205 0.793714524 0.707683061 0.898592211 0.830032619 0.77048318 0.895832612 1 17.87726126 -8.023517322 4.960720348 0.999892639 0.817440723 0.399613743 0.069375132 0.176361619 15.8640703 0.069518365 0.018124148 9.47E-09 8.023517322 -0.182451916 RNS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_HeLa_A485_30min_R1 1 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 44 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 RNS(0.998)PMAQT(0.976)PPCHLPNIPGVT(0.022)S(0.003)PGT(0.001)LIEDSKVEVNNLNNLNNHDR 61.901 0.0044372 129070000 26314 27099 16745 32542 40771 31252 34987 45564 29298 44312 TRUE FALSE FALSE 32167.45852 30267.99232 22939.67232 34319.68706 36711.69608 32888.3064 27511.74163 34389.35756 35177.83986 33265.8339 0.966981877 0.909882266 0.689586571 1.031679746 1.103585625 0.988651194 0.827026964 1.033774102 1.057476568 1 15.02175358 -5.359550123 24.6393819 1.003318199 0.86078544 0.347725299 0.094351129 47.70577431 11973.25364 0.028027057 0.041570847 4.37E-06 5.359550123 -0.142532759 RNS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR ddPTM_HeLa_A486_30min_R1 1 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 44 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDR 93.803 2.34E-05 190880000 65285 64993 34394 26261 82485 79571 95166 93312 56869 77300 TRUE FALSE FALSE 60708.85863 59842.71798 47712.2779 61136.93516 72138.96216 69754.33904 71354.46024 72066.89459 61798.45071 57943.57686 1.047723698 1.032775697 0.823426521 1.055111515 1.244986348 1.203832121 1.231447282 1.243742594 1.066528062 1 15.82236112 -5.558859008 5.998515108 1.180975151 0.968587779 0.467814935 0.094095031 0.14075747 13.88479396 0.027366153 0.036012402 2.76E-06 5.558859008 -0.212387371 RNS(ph)PMAQT(ph)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK ddPTM_HeLa_A485_30min_R1 1 RNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK 45 3 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 RNS(1)PMAQT(1)PPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRK 53.624 0.013239 161720000 44130 38530 25260 59415 59943 52826 87430 102210 35461 79497 TRUE FALSE FALSE 53946.56625 43035.74833 34604.72516 62660.691 53974.86445 55591.88768 68749.86626 77142.83724 42577.69743 59679.86093 0.903932506 0.721110064 0.579839239 1.049947001 0.904406673 0.931501629 1.151977655 1.292610875 0.71343493 1 15.86495655 -5.277476458 24.67803391 1.017172229 0.733575547 0.371107004 0.161409929 685.1673156 1054341.473 0.04610624 0.068645815 5.28E-06 5.277476458 -0.283596682 RNS(ph)S(ph)SPVSPASVPGQR ddPTM_HeLa_A485_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.934)S(0.742)S(0.323)PVSPASVPGQR 68.49 0.0042585 1066200000 266920 318650 280800 320680 366320 314290 352910 408270 260710 436110 TRUE FALSE FALSE 326295.4331 355913.3456 384679.6051 338197.9364 329847.8946 330745.7384 277507.8955 308141.1424 313032.1056 327395.803 0.996639023 1.087104179 1.17496804 1.032994111 1.007489685 1.010232066 0.847622031 0.941188432 0.956127424 1 18.3206763 -6.06616071 1.565998231 0.935664527 1.083633129 0.506559899 0.05782717 0.301475281 1.494247946 0.024198598 0.025539481 8.59E-07 6.06616071 0.147968601 RNS(ph)S(ph)SPVSPASVPGQR ddPTM_HeLa_A486_30min_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.936)S(0.54)S(0.524)PVSPASVPGQR;RNS(0.958)S(0.656)S(0.386)PVSPASVPGQR ; 87.352 0.00053397 1472950000 498680 527290 377700 208267 566260 502220 553490 581080 435900 608400 TRUE FALSE FALSE 463725.1072 485505.62 523955.5552 484856.1012 495234.3906 440261.2026 415000.9478 448780.7689 473684.163 456052.68 1.016823555 1.06458232 1.148892613 1.063158101 1.085914879 0.965373567 0.909984671 0.984054669 1.038661067 1 18.79884096 -6.260914805 24.99785994 0.974266326 1.078597083 0.555905133 0.042850538 36.57436062 1742923.407 0.01538449 0.014484627 5.48E-07 6.260914805 0.104330757 RNS(ph)S(ph)SSSSPSERPR ddPTM_HeLa_A486_30min_R1 1 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 2 0 RNS(0.475)S(0.279)S(0.243)S(0.345)S(0.416)S(0.236)PS(0.006)ERPR 80.361 0.017434 432610000 331400 315790 268400 114050 366810 277990 323310 319350 255810 324040 TRUE FALSE FALSE 308170.5714 290765.6503 372331.668 265514.1638 320801.2694 243694.4202 242414.4184 246640.9764 277983.8168 242898.2749 1.268722767 1.197067581 1.53287078 1.093108479 1.320722717 1.00327769 0.998007987 1.015408514 1.144445414 1 17.88999272 -6.263082746 24.97255937 1.0310522 1.281140216 0.559154654 0.111105231 110.7905671 1683555.926 0.037231578 0.03457338 5.46E-07 6.263082746 0.250088017 RNS(ph)SDSFCR ddPTM_HeLa_A485_30min_R1 1 RNSSDSFCR 9 1 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 0 RNS(0.951)S(0.049)DSFCR 86.262 0.0024518 143710000 19834 24227 27900 32892 36103 25334 27142 27974 25480 32794 TRUE FALSE FALSE 24246.00487 27060.1369 38221.37102 34688.80667 32508.45855 26660.44907 21342.88997 21113.33264 30593.60228 24619.05933 0.984846925 1.099153974 1.55251143 1.409022425 1.320459004 1.082919079 0.866925486 0.857601111 1.242679579 1 14.58748802 -6.417208913 4.035714906 0.979036155 1.285451056 0.362659855 0.176455567 0.265065825 7.529660424 0.070188232 0.060459588 3.83E-07 6.417208913 0.306414901 RNS(ph)SDSFCR ddPTM_HeLa_A486_30min_R1 1 RNSSDSFCR 9 1 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 0 RNS(0.997)S(0.003)DSFCR 128.61 0.00015329 78496000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RNS(ph)SEASSGDFLDLK ddPTM_HeLa_A485_30min_R1 13 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 RNS(0.975)S(0.025)EASSGDFLDLK;RNS(0.849)S(0.15)EAS(0.001)SGDFLDLK;RNS(0.996)S(0.004)EASSGDFLDLK;RNS(0.999)S(0.001)EASSGDFLDLK;RNS(0.772)S(0.222)EAS(0.002)S(0.003)GDFLDLK;RNS(0.997)S(0.003)EASSGDFLDLK;RNS(0.5)S(0.5)EASSGDFLDLK;RNS(0.59)S(0.408)EAS(0.002)SGDFLDLK;RNS(1)SEASSGDFLDLK;RNS(0.712)S(0.232)EAS(0.025)S(0.031)GDFLDLK;RNS(0.849)S(0.003)EAS(0.052)S(0.096)GDFLDLK;RNS(0.985)S(0.015)EASSGDFLDLK;RNS(0.843)S(0.157)EASSGDFLDLK ;;;;;;;;;;;; 284.63 6.51E-59 59364800000 21317944 16686385 11734268 27918600 17779255 15776940 22768173 17666883 15518671 32081680 TRUE FALSE FALSE 26060047.1 18637712.57 16075262.04 29443722.42 16009089.95 16602996.18 17903566.84 13334052.24 18633125.92 24084307.6 1.082034308 0.773852954 0.667457928 1.222527254 0.664710409 0.689369878 0.743370627 0.553640672 0.773662512 1 24.52159011 RNS(ph)SEASSGDFLDLK ddPTM_HeLa_A486_30min_R1 15 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 RNS(0.908)S(0.092)EASSGDFLDLK;RNS(0.912)S(0.087)EASSGDFLDLK;RNS(0.869)S(0.131)EASSGDFLDLK;RNS(0.998)S(0.002)EASSGDFLDLK;RNS(0.652)S(0.348)EASSGDFLDLK;RNS(0.999)S(0.001)EASSGDFLDLK;RNS(0.826)S(0.173)EASSGDFLDLK;RNS(0.493)S(0.493)EAS(0.012)S(0.002)GDFLDLK;RNS(0.992)S(0.008)EASSGDFLDLK;RNS(0.793)S(0.141)EAS(0.052)S(0.014)GDFLDLK;RNS(0.958)S(0.035)EAS(0.003)S(0.004)GDFLDLK;RNS(0.999)S(0.001)EASSGDFLDLK;RNS(0.939)S(0.025)EAS(0.018)S(0.018)GDFLDLK;RNS(0.996)S(0.004)EASSGDFLDLK;RNS(0.999)S(0.001)EASSGDFLDLK ;;;;;;;;;;;;;; 264.81 7.28E-51 95649450000 37080973 37287584 17844754 13615092 26528035 38970802 42537446 38417507 30185550 49154553 TRUE FALSE FALSE 34481788.28 34332780.04 24754720.65 31696622.24 23200641.49 34162980.68 31894127.1 29670679.3 32802057.78 36845932.99 0.935837024 0.931792935 0.671844045 0.860247514 0.629666278 0.927184574 0.865607803 0.805263347 0.890249076 1 25.13500205 -8.06503406 3.378980036 0.999897872 0.825827573 0.218152163 0.099544935 0.459939696 13.07415311 0.095916374 0.025425502 8.61E-09 8.06503406 -0.174070299 RNS(ph)SS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_A486_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 3 0 RNS(0.928)S(0.072)S(1)PVS(0.99)PAS(0.01)VPGQR 228.91 2.98E-34 702280000 522370 546330 424280 155390 623380 506300 572700 592320 430000 563470 TRUE FALSE FALSE 485754.5605 503036.8211 588572.5786 361755.773 545189.8676 443837.8537 429404.4026 457461.6663 467272.7462 422373.4444 1.150059425 1.19097644 1.393488597 0.856483232 1.290776858 1.050818558 1.016646307 1.08307393 1.106302379 1 18.68815961 -5.249045787 24.99980354 1.068900803 1.23945496 0.344903271 0.117398005 938.5490046 1893195.78 0.03075893 0.052782303 5.64E-06 5.249045787 0.170554157 RNS(ph)SSPVS(ph)PASVPGQR ddPTM_HeLa_A485_30min_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.981)S(0.019)S(0.002)PVS(0.996)PAS(0.002)VPGQR;RNS(0.974)S(0.038)S(0.231)PVS(0.754)PAS(0.002)VPGQR ; 289.4 3.43E-61 513250000 372280 452380 460260 370850 535330 417540 554980 522160 377080 510840 TRUE FALSE FALSE 455092.4016 505281.9058 630529.327 391108.5965 482030.6655 439401.7488 436403.9892 394099.4413 452756.4972 383496.9893 1.186690937 1.317564205 1.644157176 1.019847893 1.25693468 1.145776267 1.137959362 1.027646767 1.180599874 1 18.54885573 -5.288665821 24.99789863 1.119775479 1.376280233 0.481710695 0.129417211 634.7696545 582811.019 0.036299118 0.053854398 5.14E-06 5.288665821 0.256504754 RNS(ph)SSPVSPASVPGQR ddPTM_HeLa_A485_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RNS(0.333)S(0.333)S(0.333)PVSPASVPGQR 113.86 8.67E-05 1156000000 46903 87080 71833 56026 87294 94382 93976 126260 68797 77512 TRUE FALSE FALSE 57336.41054 97263.2485 98407.01592 59086.55851 78602.70285 99323.69558 73897.25989 95294.53703 82603.92686 58189.6849 0.985336329 1.671486083 1.691141928 1.015412931 1.350801314 1.70689523 1.269937447 1.637653429 1.419563055 1 15.82847581 -8.076373046 21.17058461 0.999999998 1.429652589 0.192730101 0.254504583 17724.16919 4913129.498 0.240771828 0.062167019 8.39E-09 8.076373046 0.429652591 RNS(ph)SSS(ph)SSPSERPR ddPTM_HeLa_A485_30min_R1 1 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 2 0 RNS(0.691)S(0.413)S(0.17)S(0.411)S(0.196)S(0.102)PS(0.018)ERPR 70.615 0.037168 651390000 230220 280130 264470 224100 302770 275920 308650 320150 261990 335680 TRUE FALSE FALSE 281431.6448 312888.7667 362308.4585 236342.0155 272625.1557 290366.7445 242704.4061 241632.7105 314568.9899 252001.1537 1.116787128 1.241616406 1.437725396 0.937860847 1.081840903 1.152243711 0.963108313 0.958855572 1.248283927 1 17.94307081 -5.272049334 24.99934548 1.049276182 1.263000327 0.423288717 0.115790164 671.2757448 1581669.978 0.032533461 0.048806805 5.35E-06 5.272049334 0.213724145 RNS(ph)SSSSSPSERPR ddPTM_HeLa_A485_30min_R1 4 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 RNS(0.977)S(0.014)S(0.006)S(0.002)SSPSERPR;RNS(0.72)S(0.133)S(0.133)S(0.005)S(0.005)S(0.002)PSERPR;RNS(0.563)S(0.163)S(0.052)S(0.129)S(0.055)S(0.036)PS(0.003)ERPR;RNS(0.928)S(0.063)S(0.005)S(0.001)S(0.001)S(0.001)PSERPR ;;; 127.11 1.82E-05 1656795000 459448.9 701527.2 693178.2 339144.5 690218.2 495492.4 495417.3 504400.1 502815 440959.3 TRUE FALSE FALSE 561651.7227 783564.7036 949613.6617 357671.1053 621497.6525 521435.6159 389567.3467 380695.1846 603725.3584 331036.2618 1.696647128 2.367005655 2.868609187 1.080458991 1.877430736 1.575161625 1.176811702 1.150010523 1.823743886 1 18.33662973 -5.270166347 24.99974465 1.40959445 2.316379169 0.544450008 0.388208929 477.8517797 1368879.392 0.109178746 0.164742077 5.37E-06 5.270166347 0.906784719 RNS(ph)SSSSSPSERPR ddPTM_HeLa_A486_30min_R1 2 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 RNS(0.531)S(0.122)S(0.122)S(0.102)S(0.102)S(0.018)PS(0.002)ERPR;RNS(0.603)S(0.339)S(0.052)S(0.005)S(0.001)SPSERPR ; 135.09 5.12E-06 122632000 65273.3 52396 45920.9 12742.6 53899.6 47741.7 45698.3 44225.5 38849.6 55032.4 TRUE FALSE FALSE 60697.97874 48243.95014 63702.70228 29665.41678 47139.00957 41851.81446 34264.10199 34156.31909 42217.11461 41251.92884 1.471397349 1.169495621 1.544235726 0.719127993 1.142710436 1.014542002 0.830606058 0.827993261 1.023397349 1 15.33217396 -5.257734589 24.99999375 0.937124293 1.372488176 0.675583357 0.145230845 190.687903 1286760.46 0.038826445 0.064047647 5.52E-06 5.257734589 0.435363883 RNS(ph)TDSRPVSVTYR ddPTM_HeLa_A485_30min_R1 5 RNSTDSRPVSVTYR 14 2 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 RNS(0.875)T(0.125)DSRPVSVTYR;RNS(0.499)T(0.499)DS(0.002)RPVSVTYR;RNS(0.707)T(0.288)DS(0.005)RPVSVTYR;RNS(0.898)T(0.102)DSRPVSVTYR;RNS(0.938)T(0.062)DSRPVSVTYR ;;;; 180.32 1.16E-17 4164150000 738220 984782 988375 878321 1167590 918523 1104549 1118887 894802 1164682 TRUE FALSE FALSE 902434.4922 1099943.688 1354016.042 926301.4522 1051340.64 966615.444 868553.0828 844478.2089 1074380.554 874348.2118 1.032122534 1.258015598 1.548600459 1.059419393 1.202427849 1.105526872 0.993372058 0.965837406 1.228778808 1 19.73784843 -5.985491543 1.469522436 1.048952464 1.260505782 0.240551158 0.146708769 0.558662219 2.477116271 0.060845027 0.068863566 1.03E-06 5.985491543 0.211553318 RNS(ph)TDSRPVSVTYR ddPTM_HeLa_A486_30min_R1 2 RNSTDSRPVSVTYR 14 2 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 RNS(0.771)T(0.228)DSRPVSVTYR;RNS(0.779)T(0.203)DS(0.018)RPVSVTYR ; 116.87 0.00010527 826070000 286510 330000 273890 97251 349990 305990 320880 315540 272330 327280 TRUE FALSE FALSE 266427.1285 303849.5982 379947.543 226405.2428 306090.9907 268240.0649 240592.4301 243698.4302 295935.7837 245326.9578 1.086008366 1.23854957 1.548739472 0.92287144 1.247685919 1.093398244 0.980701152 0.993361807 1.206291336 1 17.90434625 -5.282392247 24.99673739 1.068669877 1.285844255 0.349214948 0.142220103 910.4406724 1086152.229 0.040153585 0.059628479 5.22E-06 5.282392247 0.217174378 RNS(ph)TIPTK ddPTM_HeLa_A485_30min_R1 1 RNSTIPTK 8 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 1 0 RNS(0.651)T(0.349)IPTK 65.179 0.013748 69162000 228710 225760 180140 255430 304800 263480 345800 355820 225120 344440 TRUE FALSE FALSE 279585.7505 252160.6681 246781.2823 269383.4941 274453.0418 277275.4054 271917.0051 268554.5871 270299.5191 258577.4469 1.081245692 0.975184306 0.954380535 1.04179037 1.061395899 1.072310863 1.051588251 1.038584727 1.045332925 1 17.98023692 -5.490916529 24.18129257 1.048786736 1.000315547 0.212926971 0.035366188 576.4038978 436082.9766 0.009913743 0.014686327 3.23E-06 5.490916529 -0.048471189 RNS(ph)TIVLR ddPTM_HeLa_A485_30min_R1 2 RNSTIVLR 8 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 RNS(1)TIVLR;RNS(0.999)T(0.001)IVLR ; 170.52 1.37E-05 715850000 185855 207390 194224 165753 241990 201680 261820 279500 177835 264060 TRUE FALSE FALSE 227197.8036 231642.4564 266075.5399 174807.6667 217896.6259 212239.6529 205880.0181 210952.1868 213524.8533 198234.7017 1.146105105 1.16852627 1.342224836 0.881821726 1.099185078 1.070648333 1.038566994 1.064153677 1.077131559 1 17.59685001 -5.255342444 24.99998085 1.040294841 1.213909481 0.562115975 0.074951918 387.8970732 1590535.857 0.020146785 0.03375386 5.55E-06 5.255342444 0.173614639 RNS(ph)TIVLR ddPTM_HeLa_A486_30min_R1 2 RNSTIVLR 8 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 RNS(0.973)T(0.027)IVLR;RNS(0.997)T(0.003)IVLR ; 184.24 3.89E-06 706140000 197706 209681 188696 63102 225890 178874 239570 217437 178176 210880 TRUE FALSE FALSE 183847.8304 193065.1139 261764.1447 146904.645 197556.7699 156806.3445 179627.0521 167931.3417 193620.4391 158074.2754 1.163047117 1.221356944 1.655956632 0.929339354 1.249771788 0.991978892 1.136345883 1.062357182 1.224870009 1 17.27024308 -5.288716311 24.99830487 1.092685142 1.334244102 0.377499993 0.153603457 778.3797129 713354.6201 0.041967758 0.062264443 5.14E-06 5.288716311 0.24155896 RNS(ph)TTIMSR ddPTM_HeLa_A485_30min_R1 4 RNSTTIMSR 9 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RNS(0.867)T(0.131)T(0.001)IMSR;RNS(0.706)T(0.276)T(0.018)IMSR;RNS(0.996)T(0.004)TIMSR;RNS(0.989)T(0.011)TIMSR ;;; 129.76 0.000146 5158710000 509136 631347 653351 676232 830169 617507 695817 847726 633907 732694 TRUE FALSE FALSE 622391.5467 705177.5397 895052.7231 713172.8419 747514.4595 649838.7117 547150.0136 639819.8693 761126.3204 550046.87 1.131524567 1.282031729 1.627229918 1.296567403 1.359001387 1.181424251 0.994733437 1.163209727 1.383748116 1 19.06919503 -6.318484781 4.596493288 1.142137521 1.350176496 0.289480544 0.152788039 0.297153308 13.25603566 0.056760802 0.050506172 4.80E-07 6.318484781 0.208038976 RNS(ph)TTIMSR ddPTM_HeLa_A486_30min_R1 7 RNSTTIMSR 9 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RNS(0.719)T(0.278)T(0.002)IMSR;RNS(0.75)T(0.242)T(0.008)IMSR;RNS(0.961)T(0.039)TIMSR;RNS(0.992)T(0.007)TIMSR;RNS(0.989)T(0.011)TIMSR;RNS(0.827)T(0.165)T(0.007)IMSR;RNS(0.995)T(0.005)TIMSR ;;;;;; 159.66 9.26E-06 7775570000 1220483 1345164 1020980 428551 1440610 1144388 1295769 1332532 1046909 1277621 TRUE FALSE FALSE 1134933.444 1238568.306 1416330.799 997688.3858 1259915.261 1003205.044 971553.891 1029143.553 1137655.915 957696.3857 1.18506602 1.293278668 1.478893332 1.041758537 1.315568566 1.047518878 1.014469623 1.07460315 1.187908749 1 19.86920883 -5.965818028 1.299005669 1.06736713 1.293241093 0.387726892 0.117532666 0.453571946 1.594336199 0.049865001 0.058318695 1.08E-06 5.965818028 0.225873964 RNS(ph)VERPAEPVAGAATPSLVEQQK ddPTM_HeLa_A485_30min_R1 4 RNSVERPAEPVAGAATPSLVEQQK 24 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK ;;; 248.66 1.58E-49 5800540000 1540010 1501812 1115443 1734770 1711570 1556720 2029750 1953750 1211035 1954720 TRUE FALSE FALSE 1882579.912 1677435.849 1528091.783 1829536.092 1541160.081 1638227.452 1596077.331 1474589.749 1454078.616 1467444.278 1.282897034 1.143100201 1.04132866 1.246749958 1.050234141 1.116381369 1.087657879 1.004869331 0.990891878 1 20.48487429 -1 0.175956428 0.96551954 2.085403794 0.563977101 0.064023754 45.44057008 0.503350612 0.155191807 13.52617035 0.1 1 1.119884255 RNS(ph)VERPAEPVAGAATPSLVEQQK ddPTM_HeLa_A486_30min_R1 5 RNSVERPAEPVAGAATPSLVEQQK 24 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK;RNS(1)VERPAEPVAGAATPSLVEQQK ;;;; 239.9 3.30E-49 6738670000 1835370 1535721 1024148 596893 1550720 1531417 1933350 1831830 1382978 1923520 TRUE FALSE FALSE 1706720.041 1414024.875 1420725.533 1389597.069 1356214.238 1342486.341 1449605.381 1414762.298 1502855.647 1441858.072 1.183694896 0.980696299 0.985343538 0.963754406 0.940601758 0.931080782 1.005373143 0.981207738 1.04230484 1 20.45949773 -4.261288311 6.99872392 0.977882689 1.186749933 0.799419109 0.030400261 0.047578205 17.86241847 0.007946444 0.047036521 5.48E-05 4.261288311 0.208867245 RNS(ph)VTPLASPEPTK ddPTM_HeLa_A485_30min_R1 1 RNSVTPLASPEPTK 14 1 Q5W015;Q5VX20;A0A1W2PR17;Q16875-3;Q16875-2;Q16875;Q16875-4;Q9H178 Q5W015 PFKFB3 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 RNS(0.979)VT(0.021)PLASPEPTK 112.82 0.00013272 125250000 207880 187170 155610 274980 260700 194110 268870 262000 213280 360760 TRUE FALSE FALSE 254122.1888 209057.9033 213176.6145 290001.4611 234743.7926 204273.2994 211423.728 197744.0892 256083.3397 270829.1713 0.938311732 0.771917967 0.78712575 1.070791081 0.866759631 0.754251466 0.780653454 0.730143242 0.945553016 1 18.04702362 -6.014136169 24.74775871 0.820200623 0.887564608 0.024532767 0.11030592 1698.284763 2973135.962 0.035988908 0.037388831 9.68E-07 6.014136169 0.067363984 RNS(ph)VTPLASPEPTK ddPTM_HeLa_A486_30min_R1 1 RNSVTPLASPEPTK 14 1 Q5W015;Q5VX20;A0A1W2PR17;Q16875-3;Q16875-2;Q16875;Q16875-4;Q9H178 Q5W015 PFKFB3 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 RNS(0.684)VT(0.316)PLASPEPTK 84.208 0.0014224 0 182230 177100 104750 79196 171730 219870 241950 229880 166770 226510 TRUE FALSE FALSE 169456.618 163065.951 145312.0053 184372.2903 150190.0221 192744.6749 181411.5509 177541.3422 181225.7579 169790.4217 0.998034026 0.960395465 0.855831583 1.085881574 0.884561217 1.135191685 1.068443962 1.045649928 1.067349713 1 17.37339555 -6.263189314 24.999397 1.066499983 0.958678902 0.394197428 0.065866021 162.097723 2315697.468 0.021710493 0.020140575 5.46E-07 6.263189314 -0.107821081 RNSNS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_A485_30min_R1 4 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 RNS(0.169)NS(0.831)PPS(0.975)PS(0.013)S(0.012)MNQR;RNS(0.003)NS(0.997)PPS(0.987)PS(0.013)S(0.001)MNQR;RNS(0.211)NS(0.789)PPS(0.981)PS(0.01)S(0.009)MNQR;RNS(0.21)NS(0.791)PPS(0.956)PS(0.024)S(0.02)MNQR ;;; 137.52 3.13E-06 2464630000 277368 430950 364082 279184 522460 421690 544740 636370 366736 405970 TRUE FALSE FALSE 339067.5547 481345.8537 498771.0825 294435.115 470442.0479 443769.0363 428351.8489 480299.2597 440336.5513 304769.1503 1.112538964 1.579378534 1.636553706 0.966092253 1.543601271 1.456082533 1.405496089 1.575944479 1.444819959 1 18.21735735 -10.3694556 5.521448715 0.999860977 1.421313889 0.269785768 0.203656015 0.000339566 3.88E-05 0.192117656 0.046580153 4.27E-11 10.3694556 0.421452912 RNSNS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_A486_30min_R1 2 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 RNS(0.422)NS(0.578)PPS(0.986)PS(0.007)S(0.007)MNQR;RNS(0.437)NS(0.564)PPS(0.772)PS(0.12)S(0.107)MNQR ; 46.514 0.0086456 296520000 235882 215423 217004 104934 305690 219650 265160 282050 195566 293100 TRUE FALSE FALSE 219347.8899 198352.0969 301033.7604 244291.6551 267347.5098 192551.8162 198814.1634 217833.3721 212517.8183 219705.8522 0.99837072 0.902807526 1.370167236 1.111903268 1.216842915 0.876407316 0.90491064 0.991477332 0.967283375 1 17.74521377 -6.26680735 24.99235678 0.944788997 1.121397391 0.336057822 0.120832082 563.9636724 2625712.194 0.044047536 0.039967521 5.41E-07 6.26680735 0.176608394 RNSNSPPS(ph)PSSMNQR ddPTM_HeLa_A485_30min_R1 4 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RNS(0.001)NS(0.002)PPS(0.878)PS(0.05)S(0.07)MNQR;RNS(0.001)NS(0.005)PPS(0.919)PS(0.03)S(0.045)MNQR;RNSNS(0.001)PPS(0.994)PS(0.004)S(0.001)MNQR;RNS(0.168)NS(0.398)PPS(0.432)PS(0.001)S(0.001)MNQR ;;; 133.24 8.12E-06 274370000 240449 563665 439725 210710 558379 584736 658310 918930 379700 305665 TRUE FALSE FALSE 293936.0505 629580.7185 602397.576 222220.5538 502784.8262 615351.8728 517656.6906 693560.9767 455902.3072 229468.3408 1.280943809 2.743649587 2.62518818 0.968414871 2.191085813 2.681641705 2.255895906 3.022469131 1.9867765 1 17.8079356 -5.991621315 24.9999482 2.332858025 1.961433124 0.015583547 0.707177769 641.264594 1913361.117 0.215673937 0.244162391 1.02E-06 5.991621315 -0.371424902 RNSNSPPS(ph)PSSMNQR ddPTM_HeLa_A486_30min_R1 2 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RNS(0.01)NS(0.004)PPS(0.982)PS(0.002)S(0.002)MNQR;RNS(0.014)NS(0.017)PPS(0.969)PSSMNQR ; 98.443 0.00040614 296238000 169493 134953 144797 51680 243339 122945 203130 199327 105483 205316 TRUE FALSE FALSE 157612.416 124258.8328 200866.2762 120313.6518 212817.1536 107777.2959 152304.7255 153944.5934 114626.3514 153903.5372 1.024098723 0.807381266 1.305143987 0.781747151 1.382795727 0.70029122 0.989611599 1.000266766 0.744793482 1 17.23166686 -6.329503985 25 0.893423412 1.044336569 0.155496548 0.199875884 383.7335375 140943.076 0.066295133 0.058466816 4.68E-07 6.329503985 0.150913158 RNSS(ph)EASSGDFLDLK ddPTM_HeLa_A485_30min_R1 1 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 RNS(0.428)S(0.562)EAS(0.005)S(0.006)GDFLDLK 66.965 0.0072435 83895000 67693 93051 41956 204830 70791 53797 84689 74714 52497 143920 TRUE FALSE FALSE 82751.07431 103932.505 57477.27033 216019.3442 63742.79948 56613.72773 66594.5033 56390.27435 63032.66637 108043.3927 0.765905922 0.961951513 0.531983205 1.999375797 0.589974064 0.523990652 0.616368125 0.52192247 0.583401398 1 16.72125132 RNSS(ph)SPVS(ph)PASVPGQR ddPTM_HeLa_A485_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.061)S(0.934)S(0.042)PVS(0.962)PAS(0.001)VPGQR 280.01 5.30E-59 302310000 183480 286120 263980 161900 301250 277810 327770 358870 235430 223050 TRUE FALSE FALSE 224294.493 319579.2451 361637.1871 170744.187 271256.4922 292355.702 257739.2619 270856.5698 282678.6415 167447.7399 1.339489521 1.908531254 2.159701811 1.019686423 1.619947169 1.745951914 1.5392221 1.617558827 1.688160387 1 17.35335138 -10.37756982 2.89111844 0.989964619 1.633098468 0.295628628 0.289939612 20905503.23 24884586.84 1756098.371 0.073885518 4.19E-11 10.37756982 0.643133849 RNSSEAS(ph)SGDFLDLK ddPTM_HeLa_A486_30min_R1 1 RNSSEASSGDFLDLK 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 RNS(0.008)S(0.001)EAS(0.742)S(0.25)GDFLDLK 163.18 1.70E-11 9324000000 8784400 9179300 3875900 2985600 5927600 8966500 10208000 8650800 6901900 11649000 TRUE FALSE FALSE 8168658.923 8451898.838 5376752.28 6950627.684 5184105.135 7860304.395 7653850.431 6681201.686 7500162.249 8732014.578 0.935483885 0.967920835 0.615751638 0.795993596 0.593689473 0.900170782 0.876527445 0.765138632 0.858926904 1 23.05788311 -8.076320738 5.300969804 0.999984714 0.803657501 0.196083602 0.118296552 0.843216303 54.93506429 0.117747915 0.030638249 8.39E-09 8.076320738 -0.196327213 RNSSS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_A485_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.287)S(0.331)S(0.382)PVS(0.999)PAS(0.001)VPGQR 62.589 0.0094289 907240000 572150 874780 755600 481650 985110 911130 969650 1161600 733650 713500 TRUE FALSE FALSE 699422.7936 977077.9114 1035127.883 507961.3199 887028.9895 958835.3579 762476.3562 876715.7787 880886.8256 535637.581 1.305776179 1.824139952 1.932515417 0.948330248 1.65602456 1.790082309 1.423493017 1.636770477 1.644557546 1 19.03089766 -10.2356074 5.718128848 0.999995195 1.57930662 0.285585087 0.271992572 8.47E-05 1.13E-05 0.260931101 0.063282401 5.81E-11 10.2356074 0.579311425 RNSSS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_A486_30min_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.292)S(0.332)S(0.378)PVS(0.993)PAS(0.006)VPGQR;RNS(0.27)S(0.329)S(0.402)PVS(0.997)PAS(0.003)VPGQR ; 62.613 0.0094053 1229560000 785370 773460 763520 261350 1050370 712630 839170 887620 641440 742280 TRUE FALSE FALSE 730319.6187 712168.2127 1059175.392 608436.0079 918622.8003 624712.9561 629200.7902 685528.3026 697040.5357 556408.2566 1.312560714 1.279938255 1.903593952 1.093506433 1.650987004 1.122760039 1.130825761 1.232059903 1.252750166 1 19.0857843 -6.285489457 24.69482606 1.161129546 1.444377664 0.326785387 0.215144702 856.1199939 879068.0329 0.07302543 0.06443524 5.18E-07 6.285489457 0.283248119 RNSSSSS(ph)SPSERPR ddPTM_HeLa_A485_30min_R1 1 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 RNS(0.081)S(0.081)S(0.081)S(0.081)S(0.31)S(0.31)PS(0.054)ERPR 77.506 0.0044863 152400000 38542 63239 69004 45147 68676 56830 68037 80237 67586 57743 TRUE FALSE FALSE 47115.53493 70634.25094 94531.4511 47613.26629 61838.3763 59805.53092 53500.33914 60558.74994 81149.89026 43348.73278 1.086895323 1.629442118 2.180720059 1.098377351 1.426532504 1.379637352 1.234184616 1.397013155 1.87202451 1 15.4037022 RNSSSSS(ph)SPSERPR ddPTM_HeLa_A486_30min_R1 1 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 RNS(0.02)S(0.02)S(0.02)S(0.02)S(0.454)S(0.454)PS(0.012)ERPR 103.01 0.00034372 710290000 46071 36429 51154 16895 48431 41508 45624 45647 43690 51557 TRUE FALSE FALSE 42841.66081 33542.23337 70962.19875 39332.41383 42356.33238 36387.16498 34208.39264 35254.17457 47477.08438 38646.79162 1.108543789 0.867917671 1.836173089 1.017740728 1.095985737 0.941531327 0.885154788 0.912214781 1.228487085 1 15.23806103 -5.475231818 24.99998499 1.00194206 1.263311203 0.191418477 0.243715014 670.4557515 351782.3705 0.068887347 0.102173183 3.35E-06 5.475231818 0.261369143 RNSSSSSS(ph)PSERPR ddPTM_HeLa_A485_30min_R1 1 RNSSSSSSPSERPR 14 2 G3V1D0;B7WPE2;H0Y3M3;Q32P44;Q32P44-2 G3V1D0 EML3 Echinoderm microtubule-associated protein-like 3 1 0 RNS(0.006)S(0.006)S(0.006)S(0.006)S(0.016)S(0.55)PS(0.411)ERPR 72.819 0.0063204 133120000 39575 67756 60990 39284 66077 61968 67629 94484 64325 61307 TRUE FALSE FALSE 48378.32222 75679.4748 83552.73901 41429.98545 59498.14187 65212.54866 53179.51167 71311.65085 77234.43748 46024.29317 1.051147533 1.644337579 1.815405153 0.900176463 1.292755147 1.41691581 1.155466125 1.549435004 1.678123273 1 15.49010794 -5.241141485 24.98431011 1.308049416 1.517700739 0.105715005 0.285338527 2058.965327 2534339.737 0.078379413 0.13552113 5.74E-06 5.241141485 0.209651324 RNST(ph)DSRPVSVTYR ddPTM_HeLa_A486_30min_R1 2 RNSTDSRPVSVTYR 14 2 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 RNS(0.366)T(0.63)DS(0.004)RPVSVTYR;RNS(0.126)T(0.784)DS(0.083)RPVS(0.003)VT(0.004)YR ; 93.427 0.0056878 2104400000 709640 807070 623960 249668 886900 720660 777980 833840 669610 790550 TRUE FALSE FALSE 659897.9006 743114.8339 865574.0222 581239.7215 775656.732 631752.2963 583321.1754 643992.8346 727652.3339 592591.1344 1.113580447 1.254009368 1.460659757 0.980844444 1.308923956 1.066084623 0.984356906 1.086740583 1.227916335 1 19.17667752 -6.004108706 1.320641005 1.076194506 1.244281721 0.201932697 0.135349418 0.69712217 2.518517206 0.058291353 0.065690103 9.91E-07 6.004108706 0.168087214 RNT(ph)FVGTPFWMAPEVIK ddPTM_HeLa_A485_30min_R1 2 RNTFVGTPFWMAPEVIK 17 1 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;O00506-3;O00506-2;O00506 B4DR80 STK24;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 25 1 0 RNT(0.994)FVGT(0.006)PFWMAPEVIK;RNT(0.712)FVGT(0.288)PFWMAPEVIK ; 203.84 3.33E-25 223490000 239430 134152 111317 215565 251190 174753 363700 339030 150103 287220 TRUE FALSE FALSE 292690.3775 149839.9094 152497.7906 227340.7701 226180.6416 183902.7969 285992.5238 255882.3609 180227.2953 215621.3399 1.357427691 0.694921521 0.707248135 1.054351903 1.048971506 0.852897014 1.326364654 1.186720948 0.83585092 1 17.71814044 -5.438676564 24.99865646 1.055538784 0.894608647 0.058307595 0.217299315 209.2957275 62134.10988 0.061455418 0.091153103 3.64E-06 5.438676564 -0.160930138 RNT(ph)FVGTPFWMAPEVIK ddPTM_HeLa_A486_30min_R1 2 RNTFVGTPFWMAPEVIK 17 1 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;C9JDH9;C9J6L2;C9JCC0;C9J232;H7C279;O00506-3;O00506-2;O00506 B4DR80 STK24;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 25 1 0 RNT(0.925)FVGT(0.075)PFWMAPEVIK;RNT(0.997)FVGT(0.003)PFWMAPEVIK ; 208.39 2.03E-25 274790000 115633 183179 125737 120330 175937 224836 276910 281560 118285 204158 TRUE FALSE FALSE 107527.7238 168663.2289 174425.7338 280134.3211 153869.3409 197098.0203 207624.1891 217454.9344 128538.039 153035.508 0.702632515 1.102118268 1.139772959 1.830518452 1.005448624 1.287923456 1.356705982 1.420944311 0.839922974 1 17.22350691 -4.307200556 2.02743289 1.268763099 0.577649918 0.268005781 0.261876776 0.810564259 3.930183921 0.068326211 1.000874952 4.93E-05 4.307200556 -0.691113181 RNT(ph)SASDEDER ddPTM_HeLa_A485_30min_R1 1 RNTSASDEDER 11 1 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 RNT(0.812)S(0.094)AS(0.094)DEDER 124.42 8.56E-05 208970000 41113 61576 48991 45922 50313 55769 60533 76509 61643 58826 TRUE FALSE FALSE 50258.44501 68776.77756 67114.80959 48430.60258 45303.66106 58688.9786 47599.63004 57745.04779 74014.18468 44161.76081 1.138053467 1.557383046 1.519749402 1.096663758 1.025857217 1.328954678 1.077847196 1.307580285 1.675979022 1 15.43051008 -5.257274822 24.92867896 1.219953577 1.420294075 0.139544753 0.21384831 677.5778888 4055906.153 0.05948278 0.09850413 5.53E-06 5.257274822 0.200340497 RNTS(ph)ASDEDER ddPTM_HeLa_A485_30min_R1 1 RNTSASDEDER 11 1 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 RNT(0.416)S(0.417)AS(0.167)DEDER 143.58 2.78E-06 367440000 71180 109460 84489 79177 96047 98759 109170 132730 99448 105570 TRUE FALSE FALSE 87013.74543 122260.3948 115744.997 83502.23902 86484.22344 103929.8685 85844.93766 100177.7594 119406.3014 79253.34187 1.097918944 1.542652864 1.460443109 1.053611583 1.09123756 1.311362601 1.083171203 1.264019372 1.506640586 1 16.27418415 -5.248894095 24.95274874 1.19499664 1.384569762 0.176964876 0.17596226 1274.140385 2534280.099 0.047646578 0.081762528 5.64E-06 5.248894095 0.189573121 RNTSAS(ph)DEDER ddPTM_HeLa_A486_30min_R1 2 RNTSASDEDER 11 1 Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-2 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 RNT(0.057)S(0.057)AS(0.887)DEDER;RNTSAS(0.999)DEDER ; 148.52 2.37E-06 0 219370 139486 206704 84030 185036 249942 211581 181784 229945 244781 TRUE FALSE FALSE 203993.2958 128432.6214 286745.3245 195626.0866 161827.0595 219106.6973 158641.1959 140395.7515 249876.8177 183486.2443 1.111763427 0.699957764 1.562761969 1.066162138 0.881957446 1.194131462 0.86459449 0.765156822 1.361828614 1 17.48531239 -5.526433875 24.94476967 0.998864031 1.121027594 0.038361592 0.250739576 369.6596356 2593712.75 0.073253505 0.095048512 2.98E-06 5.526433875 0.122163563 RNVPQEESLEDS(ph)DVDADFK ddPTM_HeLa_A486_30min_R1 2 RNVPQEESLEDSDVDADFK 19 1 O00505 O00505 KPNA3 Importin subunit alpha-4 1 0 RNVPQEESLEDS(1)DVDADFK;RNVPQEESLEDS(1)DVDADFK ; 235.23 1.10E-45 349170000 117147 111418 62351 61314 115942 144652 172017 140967 87769 176655 TRUE FALSE FALSE 108935.6002 102588.8319 86494.97702 142742.0906 101399.4732 126806.307 128976.5272 108871.8914 95376.88759 132419.4382 0.82265566 0.774726379 0.653189428 1.077954208 0.765744627 0.957610972 0.973999958 0.822174545 0.720263497 1 17.01475539 -5.237898914 24.99914635 0.894698928 0.752644096 0.282724352 0.110686324 1118.469004 1187773.461 0.029715433 0.051429132 5.78E-06 5.237898914 -0.142054831 RNVSSFPDDAT(ph)SPLQENR ddPTM_HeLa_A485_30min_R1 2 RNVSSFPDDATSPLQENR 18 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 RNVSSFPDDAT(0.5)S(0.5)PLQENR;RNVSSFPDDAT(0.875)S(0.125)PLQENR ; 179.5 9.60E-18 903160000 435800 557110 523460 452560 745530 520220 685580 720490 537180 661980 TRUE FALSE FALSE 532742.2065 622259.1683 717109.637 477282.2069 671302.4155 547457.9148 539100.2323 543788.6978 644987.0987 496960.5688 1.072000959 1.252129862 1.442991018 0.960402569 1.350816257 1.10161238 1.084794783 1.094229063 1.297863732 1 18.92277186 RNVSSFPDDAT(ph)SPLQENR ddPTM_HeLa_A486_30min_R1 1 RNVSSFPDDATSPLQENR 18 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 RNVSSFPDDAT(0.667)S(0.333)PLQENR 165.14 3.80E-12 348840000 293480 288050 288920 101500 366520 276750 313470 333870 252640 291370 TRUE FALSE FALSE 272908.5675 265223.8689 400797.5615 236297.1295 320547.6439 242607.3988 235036.4905 257855.0893 274539.0386 218409.0555 1.249529544 1.214344654 1.835077582 1.081901705 1.467648139 1.110793681 1.076129787 1.18060622 1.256994761 1 17.73667315 -6.27298225 24.34727488 1.133144315 1.370934934 0.278792166 0.196634441 747.9941217 1577732.105 0.067871594 0.060388239 5.33E-07 6.27298225 0.237790619 RNVSSFPDDATS(ph)PLQENR ddPTM_HeLa_A485_30min_R1 2 RNVSSFPDDATSPLQENR 18 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 RNVSSFPDDAT(0.318)S(0.682)PLQENR;RNVSSFPDDAT(0.064)S(0.936)PLQENR ; 176.34 4.06E-13 1039540000 524180 861400 943470 529030 1312940 744950 808400 959470 882730 715250 TRUE FALSE FALSE 640782.0326 962133.2368 1292498.814 557929.5693 1182219.084 783954.4301 635678.736 724158.4781 1059885.814 536951.3382 1.193370771 1.791844378 2.407106049 1.039069148 2.201724811 1.460010199 1.183866564 1.348648242 1.97389547 1 19.03443182 -6.497259105 24.4110851 1.393696743 1.739955022 0.123919035 0.445947917 1206.500728 1149588.339 0.153426885 0.134748406 3.18E-07 6.497259105 0.346258279 RNVSSFPDDATS(ph)PLQENR ddPTM_HeLa_A486_30min_R1 3 RNVSSFPDDATSPLQENR 18 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 RNVSSFPDDAT(0.08)S(0.92)PLQENR;RNVSSFPDDAT(0.015)S(0.985)PLQENR;RNVSSFPDDAT(0.336)S(0.664)PLQENR ;; 186.06 4.06E-18 1897550000 999320 1216040 1153090 368656 1611150 1048480 1151390 1314310 1051620 997290 TRUE FALSE FALSE 929272.8285 1119676.562 1599597.329 858249.7988 1409064.544 919129.1978 863300.0438 1015070.304 1142775.268 747562.0927 1.243071094 1.49777065 2.139751794 1.148064899 1.884879607 1.229502147 1.154820519 1.357840792 1.528669363 1 19.51183389 -6.302500614 24.76150406 1.27032239 1.584789137 0.234697874 0.295904247 724.0260618 436613.2735 0.102052968 0.09000329 4.98E-07 6.302500614 0.314466747 RNYS(ph)SPPPCHLSR ddPTM_HeLa_A485_30min_R1 2 RNYSSPPPCHLSR 13 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 RNYS(0.601)S(0.399)PPPCHLSR;RNYS(0.5)S(0.5)PPPCHLSR ; 121.19 6.12E-05 430900000 106441 256080 258850 40945 283360 175961 181286 243640 184731 84259 TRUE FALSE FALSE 130118.4332 286026.3284 354609.3866 43181.72167 255147.6835 185174.0459 142552.7651 183886.908 221804.8172 63254.78197 2.057052909 4.521813521 5.606048675 0.682663355 4.033650508 2.927431573 2.253628274 2.907083105 3.506530421 1 15.94888693 -9.658739376 0.227494479 4.91E-14 3.719768489 0.193572723 1.308672346 22.80236413 1.414476876 21.72468384 2.98044081 2.19E-10 9.658739376 3.719768489 RNYS(ph)SPPPCHLSR ddPTM_HeLa_A486_30min_R1 2 RNYSSPPPCHLSR 13 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 RNY(0.047)S(0.477)S(0.477)PPPCHLSR;RNY(0.001)S(0.5)S(0.5)PPPCHLSR ; 101.5 0.00056904 242631000 126569 128508 157582 10084.3 198233 75447 99402 105152 119466 44376 TRUE FALSE FALSE 117697.1667 118324.5581 218601.9706 23476.76003 173368.7687 66139.11623 74530.56823 81211.18505 129821.4091 33263.96076 3.538278786 3.55713978 6.571736065 0.705771637 5.211909969 1.988311515 2.240580091 2.441416572 3.902764617 1 15.02167234 -5.855955875 0.987525336 2.435963155 4.17881469 0.168423278 1.582276057 1.033513948 2.177458351 0.741508723 1.038279256 1.39E-06 5.855955875 1.742851536 RPAAAAAAGS(ph)AS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RPAAAAAAGSASPR 14 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 2 0 RPAAAAAAGS(1)AS(1)PR 67.418 0.0019619 0 106580 146900 128990 109260 136280 118220 134550 121090 108830 129090 TRUE FALSE FALSE 130288.3533 164078.6771 176708.7687 115228.5971 122711.4847 124409.8164 105802.2933 91392.48764 130671.1828 96910.23873 1.344422994 1.693099504 1.823427236 1.189023974 1.266238597 1.283763388 1.091755574 0.94306328 1.348373345 1 16.56436148 -5.285885852 18.38286331 1.164642847 1.627593513 0.627857991 0.16223671 17.29697837 13006.55355 0.046323901 0.068866699 5.18E-06 5.285885852 0.462950666 RPAAAAAAGSAS(ph)PR ddPTM_HeLa_A485_30min_R1 3 RPAAAAAAGSASPR 14 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RPAAAAAAGS(0.002)AS(0.998)PR;RPAAAAAAGS(0.009)AS(0.991)PR;RPAAAAAAGS(0.002)AS(0.998)PR ;; 127.59 1.46E-05 9602146000 1575857 2052957 2292386 1693976 2479179 1904012 2043749 1993979 2115504 2265261 TRUE FALSE FALSE 1926400.953 2293032.463 3140434.976 1786513.62 2232343.234 2003703.124 1607085.33 1504952.524 2540066.248 1700573.122 1.132795131 1.348388043 1.846692115 1.050536197 1.312700527 1.178251672 0.945025715 0.884967841 1.493653061 1 20.69758961 -5.829891611 1.516040059 1.087729204 1.408438775 0.199085915 0.247854861 0.602660162 2.878335408 0.09515504 0.122511691 1.48E-06 5.829891611 0.320709571 RPAAAAAAGSAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 RPAAAAAAGSASPR 14 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RPAAAAAAGS(0.002)AS(0.998)PR;RPAAAAAAGSAS(1)PR;RPAAAAAAGS(0.001)AS(0.999)PR;RPAAAAAAGS(0.018)AS(0.982)PR ;;; 153.03 5.64E-08 2951690000 498098 577216 507782 168584 579282 475063 523367 517319 452576 510780 TRUE FALSE FALSE 463183.9024 531475.302 704408.7893 392472.0718 506623.05 416454.5571 392415.041 399536.7567 491805.6521 382877.3634 1.209744808 1.388108446 1.839776536 1.025059482 1.323199276 1.087696994 1.024910529 1.043511043 1.284499161 1 18.54652284 -5.298277868 24.9885128 1.118581106 1.47010014 0.469074851 0.178532079 499.11475 338561.5583 0.050479069 0.074875114 5.03E-06 5.298277868 0.351519033 RPAEAT(ph)SSPT(ph)SPERPR ddPTM_HeLa_A485_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.834)S(0.047)S(0.127)PT(0.574)S(0.419)PERPR 91.276 0.001036 1723400000 221410 343370 321910 236390 384080 310500 334060 412870 304010 314590 TRUE FALSE FALSE 270661.8906 383524.1346 440997.9048 249303.3871 345839.6466 326757.2999 262685.352 311612.9851 365022.0185 236168.5026 1.146054142 1.62394278 1.867301947 1.05561658 1.464376675 1.383576964 1.112279364 1.319451924 1.545599919 1 17.84945704 -5.272392545 24.99126514 1.288432896 1.553583957 0.225085863 0.233448643 1091.66566 2490795.161 0.065140082 0.097699155 5.34E-06 5.272392545 0.26515106 RPAEAT(ph)SSPTS(ph)PERPR ddPTM_HeLa_A485_30min_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.653)S(0.167)S(0.182)PT(0.258)S(0.741)PERPR;RPAEAT(0.898)S(0.033)S(0.071)PT(0.264)S(0.734)PERPR ; 135.76 6.65E-06 14994580000 1760170 2490640 2563500 1745720 2781860 2399710 2589230 2787870 2276590 2404950 TRUE FALSE FALSE 2151713.744 2781898.682 3511845.326 1841084.263 2504888.251 2525355.105 2036019.858 2104140.511 2733480.731 1805440.225 1.191794508 1.540842308 1.945146274 1.019742575 1.387411345 1.398747558 1.127713801 1.165444573 1.514024498 1 20.78391923 -5.281350676 24.99526495 1.246607113 1.55741926 0.297515301 0.230603299 1031.974776 1295467.342 0.064692236 0.096100993 5.23E-06 5.281350676 0.310812146 RPAEAT(ph)SSPTS(ph)PERPR ddPTM_HeLa_A486_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.443)S(0.033)S(0.523)PT(0.273)S(0.728)PERPR 121.25 3.99E-05 1930500000 207300 232580 202490 84669 262100 190160 226720 240880 200220 217360 TRUE FALSE FALSE 192769.3405 214149.5138 280899.5509 197113.7109 229224.974 166699.9926 169992.258 186036.8824 217575.2308 162931.6412 1.183130171 1.314351909 1.724033151 1.209793932 1.406878199 1.02312842 1.043334841 1.141809418 1.335377396 1 17.31390728 -6.253380443 24.7629656 1.113505904 1.375707849 0.385275665 0.163304615 597.4887015 1835924.336 0.055506847 0.054599472 5.58E-07 6.253380443 0.262201945 RPAEATS(ph)SPTS(ph)PERPR ddPTM_HeLa_A485_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.178)S(0.642)S(0.179)PT(0.157)S(0.844)PERPR 127.31 7.34E-05 1679300000 376720 555120 538630 389440 572220 519180 601430 670810 514270 498740 TRUE FALSE FALSE 460520.0643 620036.4551 737891.6513 410714.1211 515247.7676 546363.462 472929.5673 506292.7957 617479.2718 374413.2966 1.229977857 1.656021463 1.970794461 1.096953887 1.376147087 1.459252294 1.26312172 1.352229743 1.649191622 1 18.51427215 -5.275447667 24.99919824 1.335060011 1.62264032 0.253323903 0.238060859 1119.390917 1997663.318 0.066395637 0.099032746 5.30E-06 5.275447667 0.287580309 RPAEATS(ph)SPTSPERPR ddPTM_HeLa_A485_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.088)S(0.334)S(0.232)PT(0.334)S(0.012)PERPR 94.856 0.00035478 1639200000 24164 37874 41475 22307 32094 33388 25895 44981 29152 31518 TRUE FALSE FALSE 29539.19844 42303.03484 56818.32842 23525.57493 28898.60867 35136.14405 20362.32171 33949.33922 35002.539 23661.14265 1.24842654 1.787869482 2.401334934 0.994270449 1.221353047 1.484972411 0.860580658 1.434814021 1.47932581 1 14.53023213 -5.28637361 24.99910899 1.226152882 1.810076432 0.412952651 0.328441011 748.3862816 750331.8334 0.093178886 0.138268703 5.17E-06 5.28637361 0.58392355 RPAEATSS(ph)PT(ph)SPERPR ddPTM_HeLa_A485_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.108)S(0.12)S(0.774)PT(0.595)S(0.403)PERPR 62.362 0.017859 390860000 110100 163890 160160 108790 169980 151130 175010 177460 150010 143280 TRUE FALSE FALSE 134591.3652 183055.5098 219409.8488 114732.9222 153056.1944 159042.9331 137617.6838 133937.6568 180115.631 107562.9329 1.251280172 1.701845654 2.039827689 1.066658552 1.422945529 1.478603538 1.279415502 1.245202722 1.674513945 1 16.71482147 -5.272966654 24.98974251 1.330341124 1.668070645 0.286441071 0.255062044 953.366331 2066781.61 0.070724451 0.105890412 5.33E-06 5.272966654 0.337729521 RPAEATSS(ph)PT(ph)SPERPR ddPTM_HeLa_A486_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.26)S(0.359)S(0.399)PT(0.572)S(0.41)PERPR 58.49 0.025206 148030000 95637 101840 98322 25788 122130 96022 103770 107430 87320 98294 TRUE FALSE FALSE 88933.34017 93769.82751 136394.9116 60035.76725 106811.3166 84175.78192 77805.64843 82970.53418 94888.96791 73680.54261 1.207012557 1.272653867 1.851165949 0.814811687 1.449654316 1.142442481 1.055986366 1.126084733 1.287842957 1 16.16899607 -5.273877247 24.95497517 1.141859839 1.42651514 0.294577741 0.224263193 989.5162447 1985334.557 0.061702821 0.092239688 5.32E-06 5.273877247 0.2846553 RPAEATSS(ph)PTS(ph)PERPR ddPTM_HeLa_A485_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.296)S(0.392)S(0.313)PT(0.302)S(0.697)PERPR 136.67 2.49E-05 16979000000 1390200 2087400 2058700 1441100 2230200 1830300 2103100 2348300 1766200 1821200 TRUE FALSE FALSE 1699445.194 2331503.272 2820298.8 1519823.644 2008153.457 1926131.678 1653755.504 1772375.743 2120660.139 1367208.357 1.243003808 1.705302093 2.062815653 1.111625479 1.468798408 1.40880625 1.209585574 1.296346482 1.551087754 1 20.38280169 -5.281426448 24.99943356 1.313428614 1.673866764 0.339545477 0.240347285 928.0450673 1160778.536 0.067097996 0.099665741 5.23E-06 5.281426448 0.36043815 RPAEATSS(ph)PTS(ph)PERPR ddPTM_HeLa_A486_30min_R1 3 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 0 RPAEAT(0.115)S(0.06)S(0.821)PT(0.086)S(0.918)PERPR;RPAEAT(0.027)S(0.168)S(0.804)PT(0.069)S(0.932)PERPR;RPAEAT(0.354)S(0.069)S(0.577)PT(0.239)S(0.761)PERPR ;; 140.2 6.70E-06 25534800000 1996780 2082270 1967470 659000 2509410 1845190 2125550 2141730 1711530 2108130 TRUE FALSE FALSE 1856816.033 1917263.342 2729327.075 1534185.304 2194656.398 1617549.218 1593714.908 1654104.833 1859886.798 1580240.526 1.175021145 1.213273112 1.72715927 0.970855562 1.388811616 1.023609502 1.008526792 1.046742445 1.176964372 1 20.59171274 -6.270923518 24.69229732 1.051424896 1.29648056 0.302502612 0.185137044 747.7107595 1946686.63 0.063874816 0.057089064 5.36E-07 6.270923518 0.245055663 RPAEATSS(ph)PTSPERPR ddPTM_HeLa_A486_30min_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.246)S(0.051)S(0.392)PT(0.155)S(0.155)PERPR;RPAEAT(0.007)S(0.115)S(0.814)PT(0.064)SPERPR ; 139.81 1.06E-06 1210680000 156213 153690 169620 46570.2 209946 159961 157229 143620 156341 142302 TRUE FALSE FALSE 145263.2754 141511.0447 235301.4066 108417.7791 183612.615 140226.6382 117888.6412 110920.8612 169892.7638 106668.653 1.361817848 1.32664134 2.205909609 1.016397752 1.721336212 1.314600253 1.105185431 1.03986371 1.592715001 1 16.70277674 -6.491836247 7.165435575 1.190258495 1.524772872 0.199501297 0.324795159 0.355487282 65.04863873 0.113662788 0.09736241 3.22E-07 6.491836247 0.334514376 RPAEATSSPT(ph)SPERPR ddPTM_HeLa_A485_30min_R1 3 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.003)S(0.032)S(0.13)PT(0.661)S(0.173)PERPR;RPAEATS(0.007)S(0.209)PT(0.392)S(0.392)PERPR;RPAEATSSPT(0.881)S(0.119)PERPR ;; 224.56 3.13E-33 9130500000 113213 190917 187498 117224 191893 183077 180953 231214 151483 146890 TRUE FALSE FALSE 138396.8413 213243.0824 256861.3126 123627.6503 172787.4591 192662.6286 142290.9133 174508.404 181884.2486 110273.0263 1.255038026 1.933773739 2.329321333 1.121105083 1.566905933 1.747141936 1.290351032 1.58251215 1.649399266 1 16.75072041 -11.73657846 0.186292472 6.49E-13 1.771170333 0.231589498 0.333279949 76.86577884 1.607967101 32.49868182 1.07928169 1.83E-12 11.73657846 1.771170333 RPAEATSSPT(ph)SPERPR ddPTM_HeLa_A486_30min_R1 2 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.001)S(0.001)S(0.002)PT(0.846)S(0.15)PERPR;RPAEAT(0.001)S(0.005)S(0.004)PT(0.495)S(0.495)PERPR ; 159.03 7.91E-10 1143400000 129527 148137 127674 40256 156537 120081 124153 139962 117201 128292 TRUE FALSE FALSE 120447.8262 136398.0846 177112.792 93718.00243 136902.6698 105266.6271 93088.60624 108095.7079 127360.077 96166.84816 1.25248803 1.41834829 1.841723998 0.974535448 1.423595266 1.094624906 0.967990612 1.124043369 1.324365719 1 16.55325202 -5.280959472 24.99815981 1.139071672 1.495602989 0.436977244 0.194433486 769.8675053 985919.3582 0.055063182 0.081805663 5.24E-06 5.280959472 0.356531316 RPAEATSSPTS(ph)PERPR ddPTM_HeLa_A485_30min_R1 3 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.002)S(0.002)S(0.061)PT(0.106)S(0.828)PERPR;RPAEAT(0.001)S(0.021)S(0.172)PT(0.097)S(0.709)PERPR;RPAEAT(0.066)S(0.066)S(0.187)PT(0.138)S(0.543)PERPR ;; 126.02 1.55E-05 332847000 48088.6 75843.1 66171.4 40661.9 71906.7 68324.4 69543.7 86546.8 63257.8 57095.4 TRUE FALSE FALSE 58785.74317 84712.2908 90650.95448 42883.15664 64747.41647 71901.75993 54685.12038 65321.0616 75953.06023 42862.56754 1.371493742 1.976369958 2.11492124 1.000480351 1.510581848 1.677495401 1.275824653 1.523965207 1.772013777 1 15.38743065 -12.14250896 0.172098295 8.29E-17 1.730405503 0.220120087 0.315029278 104.1470847 1.771164533 40.73672009 1.249983721 7.20E-13 12.14250896 1.730405503 RPAEATSSPTS(ph)PERPR ddPTM_HeLa_A486_30min_R1 3 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.003)S(0.007)S(0.122)PT(0.119)S(0.748)PERPR;RPAEAT(0.032)S(0.032)S(0.152)PT(0.375)S(0.409)PERPR;RPAEAT(0.04)S(0.2)S(0.146)PT(0.08)S(0.534)PERPR ;; 96.848 0.00048564 6516025000 117025 108581 112521 31198.3 146039 105667 108205 107950 108118 113563 TRUE FALSE FALSE 108822.1518 99976.64611 156092.1446 72631.21907 127721.4269 92630.87988 81130.96452 83372.14153 117489.7553 85126.08563 1.278364335 1.174453699 1.833658196 0.853219299 1.500379419 1.088160923 0.953068192 0.979395927 1.380185103 1 16.37731367 -6.381640005 8.260599417 1.068854169 1.320883526 0.188112285 0.25695673 0.516180824 32.94522978 0.087713976 0.077244177 4.15E-07 6.381640005 0.252029357 RPAEDMEEEQAFK(ac)R ddPTM_HeLa_A485_30min_R1 2 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 1 ; RPAEDMEEEQAFK(1)R;RPAEDMEEEQAFK(1)R 160.8 1.58E-06 68017000 42844 42417 56804 60408 80161 37839 68143 50927 47332 92990 FALSE TRUE FALSE 52374.49999 47377.29917 77818.16341 63707.93608 72179.88938 39820.19153 53583.69137 38437.0734 56831.09825 69809.30435 0.750250994 0.678667401 1.114724808 0.912599498 1.03395801 0.570413814 0.767572344 0.550601009 0.814090597 1 16.09113171 -6.259844588 24.99991508 0.714137918 0.898699654 0.174151642 0.166604312 228.0114956 3574323.465 0.056378422 0.053545505 5.50E-07 6.259844588 0.184561736 RPAEDMEEEQAFK(ac)R ddPTM_HeLa_A486_30min_R1 2 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 1 ; RPAEDMEEEQAFK(1)R;RPAEDMEEEQAFK(1)R 201.3 1.24E-14 82003000 43009 66822 67422 23916 85052 65239 83353 80153 64308 74699 FALSE TRUE FALSE 39994.2912 61526.78136 93529.60402 55677.65665 74383.98508 57190.47548 62497.19778 61903.91163 69882.26922 55993.88419 0.714261777 1.098812527 1.670353921 0.994352463 1.328430527 1.021370035 1.116143284 1.105547731 1.248033963 1 15.77298164 RPAEDMEEEQAFKR ddPTM_HeLa_A485_30min_R1 2 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 192.32 1.34E-11 37694000 33845.9 35261 35770 45504 50029 43028 55993 53395 42772 63278 FALSE FALSE TRUE 41374.80369 39384.46722 49002.81151 47989.7683 45047.9371 45280.87955 44029.63813 40299.79253 51355.94807 47503.95915 0.870975902 0.829077574 1.031552157 1.010226709 0.948298582 0.953202225 0.926862496 0.848345975 1.081087745 1 15.53576014 -4.747994021 24.99694528 0.967345133 0.850026683 0.397105172 0.060996135 244.7045346 454934.7337 0.015619715 0.040820426 1.79E-05 4.747994021 -0.11731845 RPAEDMEEEQAFKR ddPTM_HeLa_A486_30min_R1 1 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 90.367 0.0061783 5157000 5833.9 7555.8 6052.4 2483.7 8196 5992.5 7636.6 7770.1 6031.2 6575.1 FALSE FALSE TRUE 5424.973736 6957.05089 8396.051369 5782.179119 7167.981255 5253.206277 5725.841908 6001.01785 6553.989272 4928.652163 1.100701278 1.41155242 1.703518749 1.173176546 1.454349185 1.065850481 1.161745994 1.21757788 1.329773142 1 12.26697745 -6.256841088 24.99416206 1.169010397 1.378785682 0.27343829 0.173004005 570.734072 3102245.001 0.058387723 0.056548712 5.54E-07 6.256841088 0.209775286 RPAERS(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_A485_30min_R1 3 RPAERSSPGQTPEEGAQALAEFAALHGPALR 31 2 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 RPAERS(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;RPAERS(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;RPAERS(0.499)S(0.499)PGQT(0.003)PEEGAQALAEFAALHGPALR ;; 283.98 2.94E-78 688150000 27202 63134 47860 21628.7 93975 90289 108844 285588 44717 31819 TRUE FALSE FALSE 33252.99105 70516.97211 65565.40562 22810.22111 84618.51903 95016.39243 85588.59023 215547.0952 53691.29173 23887.10889 1.392089399 2.952093217 2.744802895 0.954917618 3.542434517 3.977726768 3.583045175 9.023574023 2.247709925 1 14.54394463 -6.088570296 2.510019172 4.485805144 2.135092981 0.141576829 2.052457488 0.461728656 5.718235372 0.718033442 0.740688324 8.16E-07 6.088570296 -2.350712163 RPAERS(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_A486_30min_R1 2 RPAERSSPGQTPEEGAQALAEFAALHGPALR 31 2 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 RPAERS(0.499)S(0.499)PGQT(0.001)PEEGAQALAEFAALHGPALR;RPAERS(0.5)S(0.5)PGQT(0.001)PEEGAQALAEFAALHGPALR ; 137.5 3.18E-07 98654000 77184 79692 42483 37818 81387 93059 101149 99334 63894 141875 TRUE FALSE FALSE 71773.80018 73376.91569 58933.55533 88042.21522 71178.68356 81578.32673 75840.45035 76717.81665 69432.38336 106348.5765 0.674891969 0.689966129 0.554154623 0.827864538 0.669296063 0.767084331 0.713130846 0.721380757 0.652875531 1 16.6984412 -11.41412918 2.20899077 3.476728862 0.698670927 0.639788283 0.068251367 6766728.238 653671.1944 83724760.1 0.017156946 3.85E-12 11.41412918 -2.778057936 RPAGGRPS(ph)PSAMGK ddPTM_HeLa_A485_30min_R1 7 RPAGGRPSPSAMGK 14 2 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 RPAGGRPS(0.999)PS(0.001)AMGK;RPAGGRPS(1)PSAMGK;RPAGGRPS(0.997)PS(0.003)AMGK;RPAGGRPS(1)PSAMGK;RPAGGRPS(0.963)PS(0.037)AMGK;RPAGGRPS(0.901)PS(0.099)AMGK;RPAGGRPS(0.993)PS(0.007)AMGK ;;;;;; 147.53 3.27E-08 3740262000 2444338 2779607 2351590 2768618 3278156 2920678 3651080 3694450 2712138 3851090 TRUE FALSE FALSE 2988072.555 3104657.859 3221540.999 2919860.591 2951771.278 3073600.184 2870996.931 2788380.345 3256439.219 2891084.137 1.033547422 1.07387323 1.114302056 1.009953517 1.020991136 1.063130659 0.993052016 0.964475682 1.126373037 1 21.46317916 -5.281995018 24.83095631 1.0239824 1.073904142 0.193174702 0.045338437 1145.957889 1384299.878 0.012554108 0.018651798 5.22E-06 5.281995018 0.049921742 RPAGGRPS(ph)PSAMGK ddPTM_HeLa_A486_30min_R1 7 RPAGGRPSPSAMGK 14 2 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 RPAGGRPS(0.998)PS(0.002)AMGK;RPAGGRPS(0.997)PS(0.003)AMGK;RPAGGRPS(1)PSAMGK;RPAGGRPS(0.999)PS(0.001)AMGK;RPAGGRPS(1)PSAMGK;RPAGGRPS(0.995)PS(0.005)AMGK;RPAGGRPS(0.997)PS(0.003)AMGK ;;;;;; 151.04 2.35E-08 7561310000 4514008 4672154 3122782 1584922 4590385 4338406 4960245 4850534 3672952 5015307 TRUE FALSE FALSE 4197599.35 4301915.501 4332006.821 3689778.514 4014616.11 3803177.577 3719139.237 3746173.295 3991326.437 3759441.483 1.11654866 1.144296439 1.152300639 0.981469862 1.067875675 1.011633668 0.989279725 0.996470702 1.061680692 1 21.84208691 -5.25544101 24.99956046 1.016270447 1.138373373 0.795809691 0.028369701 205.4192694 856128.4967 0.007711257 0.01292967 5.55E-06 5.25544101 0.122102926 RPAGPLVLPELPLS(ph)PLCPSNRR ddPTM_HeLa_A485_30min_R1 1 RPAGPLVLPELPLSPLCPSNRR 22 2 Q86Y91 Q86Y91 KIF18B Kinesin-like protein KIF18B 1 0 RPAGPLVLPELPLS(1)PLCPSNRR 99.135 0.00032373 59761000 26815 48112 43804 28929 54082 43356 43852 58550 40798 37148 TRUE FALSE FALSE 32779.90424 53738.27988 60008.92244 30509.31802 48697.40619 45626.05312 34482.66196 44190.5207 48985.78438 27887.68726 1.175425697 1.926953619 2.151807064 1.094006747 1.746197371 1.636064429 1.236483386 1.584588937 1.756538071 1 14.76734068 -11.67096119 0.322330654 6.79E-10 1.630852286 0.222900707 0.322617378 93.45973246 3.237004991 65.77632393 0.294772954 2.13E-12 11.67096119 1.630852285 RPAGPLVLPELPLS(ph)PLCPSNRR ddPTM_HeLa_A486_30min_R1 2 RPAGPLVLPELPLSPLCPSNRR 22 2 Q86Y91 Q86Y91 KIF18B Kinesin-like protein KIF18B 1 0 RPAGPLVLPELPLS(1)PLCPSNRR;RPAGPLVLPELPLS(0.998)PLCPS(0.002)NRR ; 107.9 7.42E-05 131285000 44098 46157 39649 25455.8 62121 35705 45996 47508 36380 48044 TRUE FALSE FALSE 41006.95792 42499.35122 55002.15464 59262.38886 54329.20492 31300.08012 34487.3143 36691.46549 39533.44769 36013.46969 1.138656127 1.180095992 1.52726619 1.645561768 1.508580134 0.869121481 0.957622651 1.018826173 1.097740596 1 15.13624898 -6.259892035 24.99882481 0.98789884 1.408522484 0.644164423 0.152806625 102.0668139 1648996.137 0.059060102 0.056093152 5.50E-07 6.259892035 0.420623645 RPAPAVS(ph)PGSWKPGPPGS(ph)PRPWK ddPTM_HeLa_A485_30min_R1 2 RPAPAVSPGSWKPGPPGSPRPWK 23 3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 RPAPAVS(0.999)PGS(0.002)WKPGPPGS(0.999)PRPWK;RPAPAVS(0.997)PGS(0.003)WKPGPPGS(1)PRPWK ; 119.61 3.21E-05 5161100000 1474000 1810300 1215000 1755400 2104000 2070400 2833500 3216400 1708700 2692700 TRUE FALSE FALSE 1801886.215 2021998.837 1664479.06 1851293.057 1894518.372 2178802.943 2228099.577 2427572.857 2051620.417 2021459.445 0.891378859 1.000266833 0.823404627 0.915820034 0.937203255 1.077836584 1.102223239 1.200901093 1.014920394 1 20.94696583 -6.240470926 3.129688051 1.096341679 0.909531941 0.613311289 0.065508234 0.162274656 3.258026094 0.023193272 0.021911241 5.75E-07 6.240470926 -0.186809738 RPAPAVS(ph)PGSWKPGPPGS(ph)PRPWK ddPTM_HeLa_A486_30min_R1 3 RPAPAVSPGSWKPGPPGSPRPWK 23 3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 RPAPAVS(0.998)PGS(0.004)WKPGPPGS(0.998)PRPWK;RPAPAVS(0.959)PGS(0.055)WKPGPPGS(0.986)PRPWK;RPAPAVS(0.952)PGS(0.048)WKPGPPGS(1)PRPWK ;; 121.09 1.88E-05 6962600000 3201020 2847040 1603827 1207500 2814220 3119240 3634780 3585060 2359588 4263000 TRUE FALSE FALSE 2976645.028 2621430.182 2224871.766 2811121.024 2461234.286 2734419.883 2725319.599 2768820.099 2564118.988 3195517.053 0.931506538 0.820346172 0.696247815 0.879707721 0.770214724 0.855704989 0.85285716 0.866470137 0.802411299 1 21.60761796 -13.99999997 0.322966414 2.659824916 0.821432033 0.400885725 0.06164421 334.9858811 2.956232467 380.3126938 0.054268604 1.00E-14 13.99999997 -1.838392883 RPAPAVSPGS(ph)WKPGPPGS(ph)PRPWK ddPTM_HeLa_A485_30min_R1 1 RPAPAVSPGSWKPGPPGSPRPWK 23 3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 RPAPAVS(0.441)PGS(0.638)WKPGPPGS(0.921)PRPWK 52.122 0.03447 315070000 219910 210740 138170 226990 233510 255100 326210 343530 185400 314840 TRUE FALSE FALSE 268828.2208 235384.2098 189284.8327 239389.8889 210260.9245 268456.6415 256512.5686 259278.7289 222608.0794 236356.1822 1.137386035 0.995887679 0.800845702 1.012835318 0.889593505 1.135813919 1.085279709 1.096983064 0.941833115 1 17.85060308 -6.260337815 24.999984 1.06012451 0.962178525 0.160946587 0.095407021 174.4689713 3959585.426 0.03292292 0.031178101 5.49E-07 6.260337815 -0.097945985 RPAPAVSPGSWKPGPPGS(ph)PRPWK ddPTM_HeLa_A485_30min_R1 2 RPAPAVSPGSWKPGPPGSPRPWK 23 3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 RPAPAVSPGSWKPGPPGS(1)PRPWK;RPAPAVSPGSWKPGPPGS(1)PRPWK ; 130.46 1.47E-05 1060630000 927390 1012000 724350 944430 1036300 1083490 1414250 1622910 901490 1219260 TRUE FALSE FALSE 1133684.706 1130344.597 992317.2077 996021.8195 933122.3333 1140219.861 1112083.934 1224888.778 1082410.774 915320.9208 1.238565273 1.23491616 1.084119444 1.08816678 1.019448274 1.245705015 1.214966149 1.338206906 1.182547836 1 19.80391813 RPAPAVSPGSWKPGPPGS(ph)PRPWK ddPTM_HeLa_A486_30min_R1 2 RPAPAVSPGSWKPGPPGSPRPWK 23 3 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 RPAPAVSPGSWKPGPPGS(1)PRPWK;RPAPAVSPGSWKPGPPGS(1)PRPWK ; 127.24 3.17E-06 1352610000 2576600 2241200 1333640 890860 2143000 2098950 2604200 2420900 1662580 2740800 TRUE FALSE FALSE 2395993.646 2063599.15 1850061.124 2073967.102 1874204.957 1840002.89 1952601.616 1869713.918 1806693.773 2054485.84 1.166225436 1.00443581 0.900498357 1.009482305 0.912250121 0.895602614 0.950408894 0.910064154 0.879389742 1 20.97034596 -4.31795035 2.398920765 0.93015435 1.205578574 0.742884221 0.041666705 0.225340208 1.738059424 0.010657892 0.121987997 4.81E-05 4.31795035 0.275424224 RPAQPHRPS(ph)PASSLQR ddPTM_HeLa_A485_30min_R1 2 RPAQPHRPSPASSLQR 16 2 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 RPAQPHRPS(0.999)PASSLQR;RPAQPHRPS(1)PASSLQR ; 129.75 7.41E-06 103894000 45080 77420 71783 47275 67469 73081 73630 97857 66294 72154 TRUE FALSE FALSE 55107.89048 86473.59554 98338.51884 49857.51354 60751.54946 76907.40816 57898.349 73857.41732 79598.59772 54167.3357 1.017363874 1.596415892 1.815457925 0.920435035 1.121553214 1.419811537 1.068879395 1.363504709 1.469494423 1 15.72513551 -5.266034262 24.98246609 1.211032672 1.488412887 0.206453746 0.251265815 624.6175085 3396060.536 0.071145186 0.109549493 5.42E-06 5.266034262 0.277380216 RPAQPHRPS(ph)PASSLQR ddPTM_HeLa_A486_30min_R1 1 RPAQPHRPSPASSLQR 16 2 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 RPAQPHRPS(0.983)PAS(0.009)S(0.009)LQR 71.535 0.0036349 20607000 25387 19880 19552 9909.4 24477 19072 21315 20366 17822 25751 TRUE FALSE FALSE 23607.5024 18304.6364 27123.05802 23069.58399 21406.86642 16719.09055 15981.76155 15729.10639 19366.82531 19302.78199 1.223010363 0.948290066 1.405137251 1.19514296 1.109004206 0.866149271 0.827951202 0.814862148 1.003317829 1 14.23652117 -6.142361237 3.480266161 0.885785425 1.187728926 0.572342597 0.119313395 0.180572215 4.028393539 0.041422294 0.041517333 7.21E-07 6.142361237 0.301943501 RPAS(ph)GDDLSAK ddPTM_HeLa_A485_30min_R1 2 RPASGDDLSAK 11 1 D6RB33;D6RAL8;D6RDV8;Q92564-2;Q92564;Q92564-3 D6RB33 DCUN1D4 DCN1-like protein;DCN1-like protein 4 1 0 RPAS(0.994)GDDLS(0.006)AK;RPAS(0.994)GDDLS(0.006)AK ; 83.823 0.0027656 596430000 797250 1006230 986150 778600 1408820 1005420 1292730 1273130 1034740 1227630 TRUE FALSE FALSE 974595.512 1123899.845 1350967.922 821132.9465 1268552.934 1058062.237 1016527.675 960892.8713 1242402.827 921604.4339 1.057498723 1.219503514 1.46588696 0.890981984 1.376461405 1.14806548 1.102997813 1.042630478 1.348086859 1 19.81378813 -6.504748163 24.21848291 1.12677419 1.206594845 0.045686759 0.170526036 1820.600317 2431929.947 0.058809628 0.050855356 3.13E-07 6.504748163 0.079820655 RPAS(ph)GDDLSAK ddPTM_HeLa_A486_30min_R1 2 RPASGDDLSAK 11 1 D6RB33;D6RAL8;D6RDV8;Q92564-2;Q92564;Q92564-3 D6RB33 DCUN1D4 DCN1-like protein;DCN1-like protein 4 1 0 RPAS(1)GDDLSAK;RPAS(0.997)GDDLS(0.003)AK ; 116.78 0.0003019 0 1128460 1250480 943300 284800 1379040 1251850 1252330 1265040 1108510 1132570 TRUE FALSE FALSE 1049360.781 1151387.411 1308571.022 663028.793 1206067.944 1097409.475 938983.7882 977018.0076 1204596.539 848967.1002 1.236044107 1.356221472 1.541368355 0.780982906 1.420629779 1.292640757 1.106030832 1.150831413 1.418896609 1 19.69534912 -13.9999996 0.188098046 2.91E-09 1.295372419 0.114594839 0.202910534 316.3932682 3.085676591 119.9314702 0.563183459 1.00E-14 13.9999996 1.295372417 RPAS(ph)GDDLSAKK ddPTM_HeLa_A485_30min_R1 2 RPASGDDLSAKK 12 2 D6RB33;D6RAL8;D6RDV8;Q92564-2;Q92564;Q92564-3 D6RB33 DCUN1D4 DCN1-like protein;DCN1-like protein 4 1 0 RPAS(0.842)GDDLS(0.158)AKK;RPAS(0.5)GDDLS(0.5)AKK ; 80.387 0.004234 454170000 367450 339080 244040 459350 427910 454400 669650 773190 370650 733660 TRUE FALSE FALSE 449187.9848 378732.4564 334320.5514 484443.1274 385305.7779 478191.6814 526573.807 583563.9402 445036.0552 550772.064 0.815560582 0.687639191 0.607003465 0.879570986 0.699573931 0.868220654 0.956064843 1.059538016 0.808022201 1 19.07109586 -6.484905118 2.793144051 0.960737267 0.735065587 0.561431463 0.090907565 0.201501034 3.14191224 0.036138502 0.029241345 3.27E-07 6.484905118 -0.225671681 RPAS(ph)GDDLSAKK ddPTM_HeLa_A486_30min_R1 1 RPASGDDLSAKK 12 2 D6RB33;D6RAL8;D6RDV8;Q92564-2;Q92564;Q92564-3 D6RB33 DCUN1D4 DCN1-like protein;DCN1-like protein 4 1 0 RPAS(0.951)GDDLS(0.049)AKK 74.141 0.0069173 148580000 183590 196490 82401 89277 179680 223100 261910 268170 137030 312630 TRUE FALSE FALSE 170721.2891 180919.4168 114308.874 207841.3678 157142.859 195576.1903 196377.3478 207113.5451 148907.8707 234345.4131 0.728502798 0.772020303 0.487779438 0.886901796 0.670560848 0.834563765 0.837982469 0.883796027 0.635420462 1 17.83827703 -6.012338443 1.19259154 0.833389756 0.691350332 0.1966086 0.125976692 0.81237549 2.423231476 0.055487311 0.062929641 9.72E-07 6.012338443 -0.142039424 RPAS(ph)MAVMEGDLVK ddPTM_HeLa_A486_30min_R1 2 RPASMAVMEGDLVK 14 1 Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 RPAS(1)MAVMEGDLVK;RPAS(1)MAVMEGDLVK ; 163.79 4.05E-12 410180000 498910 731700 481260 276990 571840 718290 802750 819430 573810 594040 TRUE FALSE FALSE 463938.9854 673717.4272 667616.7606 644846.7183 500114.495 629674.6828 601893.4594 632863.677 623548.3128 445288.5174 1.041884008 1.512990793 1.499290313 1.448154832 1.123124616 1.414082462 1.351693196 1.421244097 1.400324258 1 18.76438088 -10.1629239 4.669254013 0.999954947 1.364969001 0.34489672 0.147224464 6.79E-05 1.22E-05 0.140076105 0.033969261 6.87E-11 10.1629239 0.365014054 RPAS(ph)PALLLPPCMLK ddPTM_HeLa_A485_30min_R1 2 RPASPALLLPPCMLK 15 1 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 0 RPAS(1)PALLLPPCMLK;RPAS(1)PALLLPPCMLK ; 141.86 5.90E-08 1589090000 1458030 1863330 1510540 1597760 2023240 1913740 2237090 2598420 1717550 2108760 TRUE FALSE FALSE 1782363.743 2081230.235 2069351.605 1685041.583 1821799.122 2013940.467 1759117.446 1961153.421 2062246.531 1583084.941 1.125880044 1.314667445 1.307163975 1.064403772 1.150790507 1.272161976 1.111195869 1.238817558 1.302675856 1 20.59430724 -9.975901004 4.246950896 0.999991075 1.209484474 0.344854268 0.086730628 20186716.8 31615000.2 2453.454662 0.022020796 1.06E-10 9.975901004 0.209493399 RPAS(ph)PALLLPPCMLK ddPTM_HeLa_A486_30min_R1 2 RPASPALLLPPCMLK 15 1 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 0 RPAS(1)PALLLPPCMLK;RPAS(1)PALLLPPCMLK ; 128.9 1.24E-05 946890000 1341250 1392110 1067710 491340 1403920 1273190 1421630 1428640 1138050 1557360 TRUE FALSE FALSE 1247235.301 1281794.134 1481155.906 1143864.351 1227827.263 1116116.763 1065923.138 1103369.859 1236697.09 1167386.919 1.068399243 1.098002824 1.268778913 0.979850238 1.051774045 0.956081265 0.913084702 0.945162089 1.059372064 1 20.15485138 -5.300520768 24.21206421 0.982586419 1.140354583 0.559819578 0.064336095 265.7637308 164647.7861 0.018659386 0.02767711 5.01E-06 5.300520768 0.157768164 RPAS(ph)PS(ph)SPEHLPATPAESPAQR ddPTM_HeLa_A485_30min_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 0 RPAS(0.974)PS(0.58)S(0.445)PEHLPAT(0.001)PAESPAQR 63.491 0.00036718 0 73896 110190 102090 81379 115650 104170 123800 123360 110540 131650 TRUE FALSE FALSE 90333.91026 123075.762 139857.3393 85824.52871 104135.4799 109624.1801 97349.11865 93105.76658 132724.3641 98832.07784 0.914014076 1.245301775 1.415100667 0.868387376 1.053660737 1.109196351 0.984995163 0.942060196 1.342927994 1 16.59269175 -5.271850269 24.9978317 1.04139984 1.196855145 0.145862435 0.164420294 1287.363073 3091113.818 0.045886306 0.068886852 5.35E-06 5.271850269 0.155455305 RPAS(ph)PS(ph)SPEHLPATPAESPAQR ddPTM_HeLa_A486_30min_R1 3 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 0 RPAS(0.991)PS(0.874)S(0.135)PEHLPATPAESPAQR;RPAS(0.971)PS(0.882)S(0.144)PEHLPAT(0.003)PAESPAQR;RPAS(0.971)PS(0.542)S(0.486)PEHLPATPAESPAQR ;; 154.69 9.25E-10 3431630000 514734 586410 581041 126061 712010 472345 547490 557770 502319 446241 TRUE FALSE FALSE 478653.8047 539940.7359 806035.636 293476.3788 622703.0666 414071.8764 410502.2112 430777.947 545860.4154 334499.3491 1.430955863 1.614175745 2.409677742 0.877360089 1.861597245 1.237885447 1.227213782 1.287828955 1.631872878 1 18.35164388 -5.273598436 24.99885864 1.332741722 1.797860429 0.30497969 0.35384854 973.8654538 2002252.33 0.09696272 0.145029449 5.33E-06 5.273598436 0.465118707 RPAS(ph)PSHNGSSGGGYGASK ddPTM_HeLa_A485_30min_R1 3 RPASPSHNGSSGGGYGASK 19 1 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 0 RPAS(0.454)PS(0.454)HNGS(0.09)S(0.003)GGGYGASK;RPAS(0.677)PS(0.179)HNGS(0.071)S(0.071)GGGY(0.003)GASK;RPAS(0.89)PS(0.109)HNGS(0.001)SGGGYGASK ;; 228.36 2.69E-35 526750000 284093 304161 268020 290021 420763 317905 486259 523820 316314 475917 TRUE FALSE FALSE 347288.5077 339729.9831 367171.7512 305864.1129 378870.3583 334550.0142 382365.7923 395352.3237 379795.3184 357279.6505 0.972035511 0.950879745 1.027687277 0.856091615 1.060430836 0.936381386 1.070214303 1.106562669 1.063019732 1 18.44669422 -6.772433807 24.93125912 1.068829435 0.968436755 0.387094525 0.056692747 197.6277944 448141.7912 0.02220035 0.015128995 1.69E-07 6.772433807 -0.10039268 RPAS(ph)PSHNGSSGGGYGASK ddPTM_HeLa_A486_30min_R1 1 RPASPSHNGSSGGGYGASK 19 1 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 0 RPAS(0.882)PS(0.117)HNGSSGGGYGASK 193.53 6.03E-19 253480000 155520 175810 133170 8417.6 165650 142780 158430 157820 147700 95596 TRUE FALSE FALSE 144618.8511 161878.1753 184736.9904 19596.5982 144872.6324 125165.2553 118789.1383 121887.8312 160502.7549 71658.13937 2.018177591 2.259034029 2.578032196 0.273473445 2.021719146 1.746699766 1.657720105 1.700962825 2.239839833 1 16.12884296 RPAS(ph)PSS(ph)PEHLPATPAESPAQR ddPTM_HeLa_A485_30min_R1 4 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 0 RPAS(0.925)PS(0.301)S(0.773)PEHLPATPAESPAQR;RPAS(0.851)PS(0.319)S(0.829)PEHLPATPAESPAQR;RPAS(0.994)PS(0.17)S(0.837)PEHLPATPAESPAQR;RPAS(0.999)PS(0.165)S(0.836)PEHLPATPAESPAQR ;;; 98.839 0.00033482 10184140000 808660 1136170 1198560 760770 1286840 1107950 1233060 1332080 1059120 1103110 TRUE FALSE FALSE 988543.6272 1269035.198 1641957.22 802328.9387 1158717.691 1165960.549 969606.6578 1005385.291 1271675.669 828124.9782 1.193713091 1.532419902 1.982740846 0.968850065 1.399206305 1.407952398 1.170845806 1.214050195 1.535608396 1 19.65948899 -5.276471371 24.99786011 1.261733114 1.565904202 0.272443716 0.243619757 1107.40719 1841590.523 0.068104862 0.101470152 5.29E-06 5.276471371 0.304171088 RPAS(ph)PSS(ph)PEHLPATPAESPAQR ddPTM_HeLa_A486_30min_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 0 RPAS(0.998)PS(0.223)S(0.78)PEHLPATPAESPAQR 117.03 2.97E-05 4642200000 393720 443930 410920 101850 507360 379860 420540 385520 372300 356420 TRUE FALSE FALSE 366122.2612 408751.37 570039.2288 237111.9472 443722.1779 332996.7353 315316.444 297745.5118 404571.2638 267170.1121 1.370371327 1.529929253 2.133619005 0.887494284 1.660822666 1.246384682 1.180208525 1.114441692 1.514283393 1 18.0273991 -5.270696457 24.99962315 1.250531822 1.663168817 0.349381288 0.279420069 760.539392 2053908.101 0.076672791 0.11550573 5.36E-06 5.270696457 0.412636995 RPAS(ph)PSSPEHLPATPAESPAQR ddPTM_HeLa_A485_30min_R1 2 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 0 RPAS(0.682)PS(0.159)S(0.159)PEHLPATPAESPAQR;RPAS(0.887)PS(0.057)S(0.057)PEHLPATPAESPAQR ; 93.596 0.00074653 1518080000 174371 246040 297980 163556 330600 245520 304030 335560 264210 274560 TRUE FALSE FALSE 213159.2274 274812.2377 408215.202 172490.6501 297684.3032 258375.0476 239071.5068 253263.3839 317234.5235 206117.2449 1.034164936 1.333281152 1.980499992 0.836856956 1.44424744 1.253534355 1.159881149 1.228734568 1.539097438 1 17.65310569 -5.293189499 24.99988173 1.228060647 1.437712783 0.125875868 0.28674126 1536.958795 1210190.277 0.079888411 0.118504912 5.09E-06 5.293189499 0.209652137 RPAS(ph)PSSPEHLPATPAESPAQR ddPTM_HeLa_A486_30min_R1 4 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 0 RPAS(0.937)PS(0.047)S(0.016)PEHLPATPAESPAQR;RPAS(0.932)PS(0.034)S(0.034)PEHLPATPAESPAQR;RPAS(0.938)PS(0.031)S(0.031)PEHLPATPAESPAQR;RPAS(0.922)PS(0.032)S(0.046)PEHLPATPAESPAQR ;;; 196.55 2.84E-21 4306410000 768310 844050 801693 138781 1007180 701122 805650 813400 769694 644390 TRUE FALSE FALSE 714455.4366 777164.404 1112130 323089.1816 880850.0928 614624.6961 604067.8487 628206.5764 836411.6956 483030.5497 1.479110249 1.608934268 2.302400956 0.668879394 1.823590854 1.272434417 1.250578973 1.300552474 1.73159171 1 18.88175491 -5.251080171 24.99998883 1.324584993 1.778026987 0.280062238 0.367648293 1009.071502 2435198.424 0.096070669 0.164066049 5.61E-06 5.251080171 0.453441994 RPAS(ph)TAGLPTAGLPTATGLPSGAPPGVATIR ddPTM_HeLa_A485_30min_R1 2 RPASTAGLPTAGLPTATGLPSGAPPGVATIR 31 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RPAS(0.779)T(0.211)AGLPT(0.01)AGLPTATGLPSGAPPGVATIR;RPAS(0.794)T(0.203)AGLPT(0.004)AGLPTATGLPSGAPPGVATIR ; 138.6 3.46E-07 514880000 94192 106606 117807 70561 134254 101763 135338 146838 106953 102420 TRUE FALSE FALSE 115144.6854 119072.6444 161388.7117 74415.56876 120887.2004 107091.1533 106421.9307 110825.7503 128417.4861 76888.5789 1.497552525 1.548638901 2.098994597 0.967836444 1.572238713 1.392809633 1.384105835 1.441381176 1.67017635 1 16.23048169 -12.16775331 0.245615418 9.74E-31 1.559336206 0.236195664 0.267769668 98.55329917 2.199931967 52.05512534 0.416466497 6.80E-13 12.16775331 1.559336206 RPAS(ph)TAGLPTAGLPTATGLPSGAPPGVATIR ddPTM_HeLa_A486_30min_R1 1 RPASTAGLPTAGLPTATGLPSGAPPGVATIR 31 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RPAS(0.755)T(0.245)AGLPTAGLPTATGLPSGAPPGVATIR 138.24 3.90E-07 214890000 125220 106090 117810 46289 124140 112320 124530 114050 113070 103290 TRUE FALSE FALSE 116442.7246 97683.04203 163429.1871 107763.1313 108569.2036 98463.10039 93371.27686 88083.30469 122870.9986 77425.51169 1.503932258 1.26163896 2.11079247 1.391829759 1.402240699 1.271713912 1.205949755 1.137652213 1.586957528 1 16.24052139 -5.782197001 2.35298655 1.255266529 1.598766959 0.289528719 0.245962845 0.394041099 4.473960699 0.081405242 0.102297008 1.65E-06 5.782197001 0.34350043 RPAS(ph)VSSSAAVEHEQR ddPTM_HeLa_A485_30min_R1 9 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RPAS(0.999)VS(0.001)SSAAVEHEQR;RPAS(0.985)VS(0.015)SSAAVEHEQR;RPAS(0.989)VS(0.011)SSAAVEHEQR;RPAS(0.786)VS(0.214)SSAAVEHEQR;RPAS(0.936)VS(0.021)S(0.021)S(0.021)AAVEHEQR;RPAS(0.952)VS(0.048)SSAAVEHEQR;RPAS(0.995)VS(0.005)SSAAVEHEQR;RPAS(0.997)VS(0.003)SSAAVEHEQR;RPAS(0.693)VS(0.233)S(0.055)S(0.019)AAVEHEQR ;;;;;;;; 262.8 5.01E-51 20264300000 2030016 2244300 2898637 2051969 2795512 2184888 2703224 2175394 2532687 2905214 TRUE FALSE FALSE 2481586.056 2506751.362 3970963.449 2164062.871 2517181.01 2299285.357 2125658.109 1641875.211 3040974.05 2180997.616 1.137821535 1.149359973 1.820709669 0.992235321 1.154142027 1.054235612 0.974626516 0.752809264 1.39430416 1 21.05655676 RPAS(ph)VSSSAAVEHEQR ddPTM_HeLa_A486_30min_R1 5 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RPAS(0.998)VS(0.002)SSAAVEHEQR;RPAS(0.989)VS(0.011)SSAAVEHEQR;RPAS(0.945)VS(0.055)SSAAVEHEQR;RPAS(0.543)VS(0.45)S(0.007)SAAVEHEQR;RPAS(0.935)VS(0.032)S(0.032)S(0.002)AAVEHEQR ;;;; 276.79 8.85E-59 14561200000 1653410 1760720 1635080 401378 1929630 1405940 1479790 1619370 1454590 1515160 TRUE FALSE FALSE 1537514.497 1621194.135 2268226.765 934428.2685 1687597.812 1232489.417 1109530.89 1250674.802 1580675.032 1135754.074 1.353738923 1.427416526 1.997110833 0.822738205 1.485883125 1.08517279 0.976911213 1.101184517 1.391740579 1 20.11521905 -5.270172371 24.99997944 1.1350018 1.576221548 0.441866414 0.241283061 597.3796096 1710120.886 0.06666963 0.100637001 5.37E-06 5.270172371 0.441219748 RPASGDDLS(ph)AKK ddPTM_HeLa_A486_30min_R1 1 RPASGDDLSAKK 12 2 D6RB33;D6RAL8;D6RDV8;Q92564-2;Q92564;Q92564-3 D6RB33 DCUN1D4 DCN1-like protein;DCN1-like protein 4 1 0 RPAS(0.04)GDDLS(0.96)AKK 93.424 0.0012771 178920000 225060 187570 95889 116170 200310 222050 280790 287260 150750 365740 TRUE FALSE FALSE 209284.4562 172706.2701 133019.7888 270449.6309 175185.252 194655.7286 210533.3721 221857.1688 163817.1314 274156.3234 0.76337636 0.62995545 0.485196866 0.986479639 0.63899767 0.710017286 0.767931848 0.809236008 0.597531836 1 18.06463922 -14 0.289678046 3.217834015 0.695278193 0.301173174 0.130284042 312.214024 2.950059794 418.7039343 0.138742355 1.00E-14 14 -2.522555822 RPASPS(ph)SPEHLPATPAESPAQR ddPTM_HeLa_A485_30min_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 0 RPAS(0.168)PS(0.747)S(0.086)PEHLPATPAESPAQR 182.5 1.07E-19 1229000000 192230 343650 370940 134710 346360 281960 311180 329000 314310 246090 TRUE FALSE FALSE 234990.9003 383836.8781 508166.1421 142068.8662 311875.1823 296722.9896 244693.8509 248312.2341 377389.134 184744.292 1.27197922 2.077665697 2.75064597 0.769002737 1.68814516 1.606128051 1.324500196 1.344086096 2.042764786 1 17.49517026 -5.26448014 24.99756929 1.428614217 2.037853808 0.276664361 0.470005596 361.5188257 2971990.539 0.129501593 0.201929668 5.44E-06 5.26448014 0.609239591 RPAST(ph)AGLPTAGLPTATGLPSGAPPGVATIR ddPTM_HeLa_A486_30min_R1 1 RPASTAGLPTAGLPTATGLPSGAPPGVATIR 31 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RPAS(0.449)T(0.546)AGLPT(0.005)AGLPTATGLPSGAPPGVATIR 95.26 0.00020878 335990000 29284 36735 31449 19786 37410 23409 30810 30516 28394 33986 TRUE FALSE FALSE 27231.34282 33823.98481 43626.89503 46062.80793 32717.68897 20521.03559 23101.01213 23568.17296 30855.21478 25475.68439 1.068915065 1.327696807 1.712491581 1.808108753 1.284271247 0.805514595 0.906786714 0.925124232 1.211163332 1 14.63683328 -6.041949563 5.795734214 0.966589041 1.493035241 0.565340703 0.211595025 0.156846638 13.77801113 0.075620249 0.077577287 9.08E-07 6.041949563 0.5264462 RPASVS(ph)SSAAVEHEQR ddPTM_HeLa_A486_30min_R1 1 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RPAS(0.303)VS(0.696)S(0.001)SAAVEHEQR 219.21 5.89E-34 7993200000 444680 508530 419690 76254 485000 354910 382990 387760 353830 373120 TRUE FALSE FALSE 413510.2283 468232.2308 582205.2077 177523.1657 424166.7776 311124.8127 287161.8511 299475.5127 384500.2693 279688.3234 1.478467972 1.674121483 2.08162143 0.63471783 1.516569489 1.11239829 1.026720914 1.070747284 1.374745519 1 18.0934605 -5.253177234 24.98911049 1.122255577 1.737675396 0.560001541 0.259476015 460.5341087 1392896.261 0.06842421 0.11603585 5.58E-06 5.253177234 0.61541982 RPAT(ph)PAEVR ddPTM_HeLa_A486_30min_R1 1 RPATPAEVR 9 1 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 RPAT(1)PAEVR 65.232 0.018252 207830000 74021 89946 92712 29749 112470 76305 89494 91982 80879 85606 TRUE FALSE FALSE 68832.51014 82818.35138 128612.5693 69257.17543 98362.96386 66891.26491 67101.65463 71039.70655 87889.65684 64169.7004 1.072663729 1.290614587 2.00425697 1.079281577 1.532856835 1.042411987 1.045690633 1.107059969 1.369644182 1 15.96960463 -6.267935067 24.89425127 1.115448176 1.406287458 0.223526904 0.26332867 789.763694 3026702.463 0.092154336 0.083194102 5.40E-07 6.267935067 0.290839282 RPATADS(ph)PKPSAK ddPTM_HeLa_A485_30min_R1 6 RPATADSPKPSAK 13 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 RPATADS(0.998)PKPS(0.002)AK;RPATADS(1)PKPSAK;RPATADS(0.999)PKPS(0.001)AK;RPAT(0.001)ADS(0.996)PKPS(0.003)AK;RPATADS(0.992)PKPS(0.008)AK;RPATADS(0.996)PKPS(0.004)AK ;;;;; 110.6 0.00013875 13759010000 10369950 7850360 5189180 16887200 10208860 10699430 17858500 15264600 8055470 22799000 TRUE FALSE FALSE 12676709.6 8768391.313 7108873.622 17809704.98 9192430.053 11259635.61 14042885.58 11520932.92 9672128.94 17115628.88 0.740651114 0.512303192 0.415343992 1.040552182 0.537078136 0.657856961 0.820471493 0.673123552 0.565105086 1 24.02881097 -11.44425153 2.150503925 4.040659637 0.663064311 0.265924886 0.168221567 7753353.606 598815.9795 114955978.1 0.042549459 3.60E-12 11.44425153 -3.377595325 RPATADS(ph)PKPSAK ddPTM_HeLa_A486_30min_R1 8 RPATADSPKPSAK 13 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 RPAT(0.003)ADS(0.996)PKPS(0.001)AK;RPATADS(0.965)PKPS(0.035)AK;RPAT(0.006)ADS(0.994)PKPS(0.001)AK;RPAT(0.001)ADS(0.996)PKPS(0.003)AK;RPAT(0.01)ADS(0.823)PKPS(0.166)AK;RPAT(0.001)ADS(0.999)PKPSAK;RPATADS(0.961)PKPS(0.039)AK;RPATADS(1)PKPSAK ;;;;;;; 136.34 6.87E-06 13956970000 10913200 9121640 3801800 6928740 7590670 11245910 15167120 13685430 7091590 19886080 TRUE FALSE FALSE 10148241.04 8398808.026 5273958.776 16130456.88 6638577.388 9858503.964 11372146.15 10569556.34 7706294.731 14906476.13 0.680794102 0.5634335 0.353803188 1.08211067 0.44534854 0.661357109 0.762899699 0.709058013 0.51697629 1 23.82943591 -11.51907471 2.076153482 5.254234493 0.644275116 0.243702932 0.189282898 5912137.6 293196.2359 118858481.4 0.045743994 3.03E-12 11.51907471 -4.609959377 RPDDVPLS(ph)LSPSKR ddPTM_HeLa_A485_30min_R1 1 RPDDVPLSLSPSKR 14 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 RPDDVPLS(0.623)LS(0.362)PS(0.015)KR 148.55 4.76E-08 1289000000 755900 702760 649050 1042200 934390 884510 1234300 984960 755320 1408600 TRUE FALSE FALSE 924047.3472 784941.6688 889160.6042 1099132.747 841358.8508 930821.5759 970581.7217 743397.0156 906905.7958 1057461.943 0.873835085 0.742288338 0.84084407 1.039406433 0.795639839 0.880241206 0.917840805 0.7030012 0.857624997 1 20.01217431 -4.998814929 24.99773852 0.875316806 0.803937821 0.092911121 0.094522071 102.70897 2166310.815 0.02474094 0.050839834 1.00E-05 4.998814929 -0.071378985 RPDDVPLSLS(ph)PSK ddPTM_HeLa_A486_30min_R1 3 RPDDVPLSLSPSK 13 1 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 RPDDVPLS(0.001)LS(0.999)PS(0.001)K;RPDDVPLS(0.029)LS(0.97)PS(0.001)K;RPDDVPLS(0.024)LS(0.972)PS(0.003)K ;; 172.95 1.76E-12 804330000 708780 740640 429665 312047 623590 797270 906560 814720 659010 1087330 TRUE FALSE FALSE 659098.1821 681948.989 596042.7948 726461.186 545373.5275 698910.9334 679729.0994 629226.0412 716133.5174 815055.4907 0.808654367 0.836690258 0.731291061 0.891302733 0.669124414 0.857501043 0.833966653 0.772003929 0.878631609 1 19.63653876 -8.048680853 3.740828696 0.999846644 0.801069057 0.508420987 0.060816467 0.190124191 7.229889863 0.054631179 0.014401491 8.94E-09 8.048680853 -0.198777587 RPDDVPLSLS(ph)PSKR ddPTM_HeLa_A485_30min_R1 3 RPDDVPLSLSPSKR 14 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 RPDDVPLS(0.03)LS(0.951)PS(0.019)KR;RPDDVPLS(0.001)LS(0.991)PS(0.007)KR;RPDDVPLS(0.188)LS(0.795)PS(0.017)KR ;; 188.9 8.91E-18 5379110000 1378590 1265780 1105890 1731150 1626100 1351520 2015730 1688460 1225610 2279580 TRUE FALSE FALSE 1685252.589 1413801.96 1515004.731 1825718.341 1464199.774 1422283.497 1585052.819 1274362.538 1471578.685 1711322.659 0.984766129 0.826145761 0.885282926 1.066846355 0.855595388 0.831101891 0.92621506 0.744665263 0.859907206 1 20.70668037 RPDDVPLSLS(ph)PSKR ddPTM_HeLa_A486_30min_R1 6 RPDDVPLSLSPSKR 14 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 RPDDVPLS(0.024)LS(0.972)PS(0.003)KR;RPDDVPLS(0.026)LS(0.854)PS(0.12)KR;RPDDVPLS(0.203)LS(0.772)PS(0.025)KR;RPDDVPLS(0.16)LS(0.838)PS(0.002)KR;RPDDVPLS(0.004)LS(0.987)PS(0.009)KR;RPDDVPLS(0.017)LS(0.616)PS(0.367)KR ;;;;; 202.16 5.33E-22 11386310000 5429910 5719440 3472480 2643580 5604110 5915070 7512420 7378990 4418400 8145760 TRUE FALSE FALSE 5049301.349 5266210.745 4817117.252 6154387.839 4901190.268 5185328.803 5632733.058 5698955.059 4801390.47 6106008.676 0.82693976 0.862463685 0.78891425 1.007923206 0.802683148 0.849217399 0.922490182 0.933335565 0.786338625 1 22.54179821 -14 0.244786517 1.756836052 0.855826717 0.250535537 0.068437094 254.311847 2.532745631 96.3438443 0.101429429 1.00E-14 14 -0.901009334 RPDFAQQQAMQQLTFDGK(ac)R ddPTM_HeLa_A486_30min_R1 1 RPDFAQQQAMQQLTFDGKR 19 2 Q9C0J8;B9A053;Q9C0J8-3;Q9C0J8-2 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 0 1 RPDFAQQQAMQQLTFDGK(1)R 121.63 7.89E-06 17002000 9944.5 13857 15292 6609.8 21162 13435 18188 16477 15928 13573 FALSE TRUE FALSE 9247.441903 12758.92085 21213.47193 15387.94844 18507.66463 11777.5263 13637.17003 12725.54679 17308.65186 10174.23245 0.908908062 1.254042593 2.085019389 1.512443175 1.81907232 1.157583764 1.34036352 1.25076234 1.701224337 1 13.31263234 -6.285751767 24.93577187 1.308808002 1.532775727 0.099099331 0.336279959 2049.120681 2101654.089 0.122585953 0.108159267 5.18E-07 6.285751767 0.223967724 RPDHS(ph)GGSPS(ph)PPT(ph)SEPAR ddPTM_HeLa_A485_30min_R1 1 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 3 0 RPDHS(0.605)GGS(0.396)PS(0.997)PPT(0.536)S(0.465)EPAR 99.366 0.00018421 540850000 116220 174820 168030 129850 211070 167870 191580 230290 171320 189000 TRUE FALSE FALSE 142072.738 195263.6783 230191.2893 136943.3767 190055.1297 176659.4136 150647.3679 173811.0164 205702.3526 141885.7783 1.001317678 1.376203314 1.622370417 0.965166336 1.339493866 1.245081894 1.061751007 1.225006611 1.449774284 1 17.11437046 -5.27519889 24.97535935 1.197089831 1.337587795 0.103898511 0.198451601 1904.010115 3456030.725 0.05560975 0.082977403 5.31E-06 5.27519889 0.140497964 RPDHS(ph)GGSPSPPTSEPAR ddPTM_HeLa_A485_30min_R1 1 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RPDHS(0.539)GGS(0.44)PS(0.02)PPTSEPAR 54.223 0.020773 35857000 22652 31701 26365 17332 27922 29955 26790 36948 24302 19557 TRUE FALSE FALSE 27690.85925 35408.15619 36118.51064 18278.80327 25141.98764 31523.39748 21066.09765 27886.44507 29179.18849 14681.79982 1.886067076 2.411704057 2.460087393 1.244997446 1.712459504 2.147107158 1.434844359 1.899388727 1.987439472 1 13.84174122 -10.77277331 0.141061843 5.11E-18 2.326596734 0.37002061 0.360981288 52.14828845 1.142148393 22.38165651 2.914192476 1.69E-11 10.77277331 2.326596734 RPDHSGGS(ph)PS(ph)PPT(ph)SEPAR ddPTM_HeLa_A485_30min_R1 1 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 3 0 RPDHS(0.401)GGS(0.599)PS(1)PPT(0.599)S(0.401)EPAR 85.945 0.00047235 665320000 143550 236790 227880 184520 260040 209590 244250 297290 211870 261450 TRUE FALSE FALSE 175482.2023 264480.5307 312182.2949 194599.8604 234149.5045 220563.8083 192063.9922 224379.1614 254390.3656 196275.3266 0.894061446 1.347497596 1.590532545 0.991463694 1.192964539 1.123746994 0.97854374 1.143185775 1.296089376 1 17.5825193 RPDHSGGS(ph)PS(ph)PPT(ph)SEPAR ddPTM_HeLa_A486_30min_R1 2 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 3 0 RPDHS(0.458)GGS(0.542)PS(1)PPT(0.542)S(0.458)EPAR;RPDHS(0.037)GGS(0.964)PS(0.998)PPT(0.552)S(0.45)EPAR ; 127.05 2.25E-06 603890000 329945 377184 357487 141577 451595 342599 384056 364961 331122 353303 TRUE FALSE FALSE 306817.5593 347294.5662 495915.5402 329598.4109 394951.7441 300332.6187 287961.1267 281867.3473 359823.9216 264833.6292 1.158529452 1.311368829 1.872555014 1.244548934 1.491320212 1.134042605 1.087328401 1.064318562 1.358679117 1 18.0147268 -6.270262625 23.53378155 1.130297018 1.425746673 0.340868044 0.199149877 346.851439 925134.6885 0.070240521 0.062970195 5.37E-07 6.270262625 0.295449655 RPDHSGGS(ph)PS(ph)PPTSEPAR ddPTM_HeLa_A485_30min_R1 6 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 2 0 RPDHS(0.035)GGS(0.966)PS(0.951)PPT(0.039)S(0.009)EPAR;RPDHS(0.062)GGS(0.938)PS(0.992)PPT(0.006)S(0.002)EPAR;RPDHS(0.09)GGS(0.91)PS(0.998)PPT(0.001)S(0.001)EPAR;RPDHS(0.122)GGS(0.887)PS(0.967)PPT(0.02)S(0.004)EPAR;RPDHS(0.109)GGS(0.892)PS(0.832)PPT(0.078)S(0.088)EPAR;RPDHS(0.083)GGS(0.917)PS(0.998)PPT(0.001)S(0.001)EPAR ;;;;; 121.92 9.55E-06 3713230000 808933 1212152 1197700 790070 1313821 1106097 1274121 1412885 1049829 1150797 TRUE FALSE FALSE 988877.3551 1353902.632 1640779.07 833229.5235 1183012.368 1164010.529 1001894.64 1066372.738 1260520.051 863924.4867 1.144634016 1.567153904 1.899215841 0.964470317 1.369346958 1.347352166 1.159701635 1.234335587 1.459062765 1 19.72054569 -5.271571003 24.98911003 1.238064376 1.540016536 0.294630933 0.22400675 885.5105546 2184063.133 0.062537996 0.093973203 5.35E-06 5.271571003 0.30195216 RPDHSGGS(ph)PS(ph)PPTSEPAR ddPTM_HeLa_A486_30min_R1 4 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 2 0 RPDHS(0.44)GGS(0.56)PS(0.993)PPT(0.005)S(0.001)EPAR;RPDHS(0.37)GGS(0.636)PS(0.865)PPT(0.099)S(0.031)EPAR;RPDHS(0.081)GGS(0.919)PS(0.997)PPT(0.002)S(0.001)EPAR;RPDHS(0.126)GGS(0.887)PS(0.93)PPT(0.027)S(0.03)EPAR ;;; 133.41 8.88E-07 5088500000 1079860 1153890 1075081 386844 1426620 1082181 1152172 1200850 1063922 1067897 TRUE FALSE FALSE 1004167.39 1062451.554 1491381.155 900592.382 1247680.017 948672.511 863886.3792 927442.6694 1156143.616 800488.6404 1.254443024 1.327253755 1.863088468 1.125053294 1.558647998 1.185116769 1.079198799 1.158595666 1.444297342 1 19.6105214 -6.287728984 20.57729982 1.17746327 1.427825164 0.260553157 0.212409902 121.3066372 94946.85662 0.073548718 0.064920092 5.16E-07 6.287728984 0.250361895 RPDHSGGS(ph)PSPPT(ph)SEPAR ddPTM_HeLa_A485_30min_R1 1 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 2 0 RPDHS(0.012)GGS(0.984)PS(0.42)PPT(0.436)S(0.147)EPAR 97.152 0.00035477 2663000000 310310 482350 476760 273810 501360 450520 493280 535850 407350 431640 TRUE FALSE FALSE 379337.3889 538756.6366 653133.3636 288767.547 451442.838 474108.5306 387886.6983 404431.9473 489101.4086 324040.0917 1.170649554 1.662623392 2.015594305 0.89114759 1.393169702 1.463116888 1.197033047 1.248092312 1.509385477 1 18.3058128 -12.70605797 0.08991105 3.45E-08 1.751828281 0.146543636 0.289137188 300.0372028 2.45482891 64.99200685 7.728926006 1.97E-13 12.70605797 1.751828247 RPDHSGGS(ph)PSPPTSEPAR ddPTM_HeLa_A485_30min_R1 7 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RPDHS(0.002)GGS(0.997)PS(0.001)PPTSEPAR;RPDHS(0.035)GGS(0.964)PS(0.001)PPTSEPAR;RPDHS(0.007)GGS(0.992)PS(0.001)PPTSEPAR;RPDHS(0.004)GGS(0.996)PSPPTSEPAR;RPDHS(0.016)GGS(0.982)PS(0.002)PPTSEPAR;RPDHS(0.156)GGS(0.841)PS(0.004)PPTSEPAR;RPDHS(0.225)GGS(0.719)PS(0.054)PPT(0.001)S(0.001)EPAR ;;;;;; 172.06 1.24E-12 4515128000 821357 1371599 1291787 628883 1368319 1324692 1242411 1533171 1203055 1064522 TRUE FALSE FALSE 1004065.031 1531995.572 1769672.767 663237.2859 1232084.356 1394050.825 976959.7403 1157158.408 1444497.103 799156.2565 1.256406395 1.917016302 2.214426469 0.829921909 1.541731477 1.744403317 1.222489009 1.44797516 1.807527742 1 19.60811809 -12.00320715 0.246358387 9.63E-22 1.617199706 0.149922997 0.377724218 118.2304837 2.836887938 63.58594504 0.603143485 9.93E-13 12.00320715 1.617199706 RPDHSGGS(ph)PSPPTSEPAR ddPTM_HeLa_A486_30min_R1 6 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RPDHS(0.175)GGS(0.824)PS(0.001)PPTSEPAR;RPDHS(0.002)GGS(0.998)PSPPTSEPAR;RPDHS(0.03)GGS(0.97)PSPPTSEPAR;RPDHS(0.136)GGS(0.864)PSPPTSEPAR;RPDHS(0.011)GGS(0.988)PSPPTSEPAR;RPDHS(0.006)GGS(0.991)PS(0.003)PPTSEPAR ;;;;; 206.49 1.24E-25 3478590000 910980 1024988 1028480 188195.4 1308900 790918 945569 903104 870316 829947 TRUE FALSE FALSE 847125.0063 943764.2179 1426735 438128.4021 1144725.557 693342.5786 708977.635 697486.9338 945755.6916 622122.8692 1.361668327 1.517006149 2.293333151 0.704247382 1.840031309 1.114478527 1.139610309 1.121140161 1.520207243 1 19.24684001 -5.266148946 24.99602322 1.230600237 1.703302889 0.297524038 0.36315339 522.1297322 2771205.749 0.09842957 0.151501113 5.42E-06 5.266148946 0.472702652 RPDPDS(ph)DEDEDYER ddPTM_HeLa_A485_30min_R1 4 RPDPDSDEDEDYER 14 1 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 0 RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER ;;; 140.46 4.90E-06 11659720000 2690008 6733090 8555200 1905071 5388410 4639420 3415298 4267670 5957420 2577924 TRUE FALSE FALSE 3288390.999 7520466.305 11720124.49 2009140.205 4851920.981 4882332.857 2685591.682 3221017.241 7153019.549 1935294.99 1.699167836 3.885953482 6.055988649 1.038157085 2.507070501 2.522784838 1.387691125 1.664354663 3.696087463 1 20.88412206 -5.28782797 24.99903548 2.02209746 3.880929386 0.332068021 1.237836795 854.5145292 809516.0957 0.348287298 0.516766411 5.15E-06 5.28782797 1.858831927 RPDPDS(ph)DEDEDYER ddPTM_HeLa_A486_30min_R1 8 RPDPDSDEDEDYER 14 1 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 0 RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER ;;;;;;; 159.44 8.64E-08 14276750000 4768032 5822790 5540525 1692385 5871668 4902499 5310589 5196561 5321408 5557564 TRUE FALSE FALSE 4433817.579 5361370.914 7685964.66 3939957.808 5135188.648 4297678.518 3981823.463 4013417.5 5782671.93 4165913.801 1.064308527 1.286961558 1.844964881 0.945760761 1.232668004 1.031629247 0.955810334 0.963394274 1.388092075 1 21.99020156 RPDPDS(ph)DEDEDYERER ddPTM_HeLa_A485_30min_R1 4 RPDPDSDEDEDYERER 16 2 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 0 RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER ;;; 226.71 3.48E-34 19800400000 1098900 1509860 2139100 1429310 2980890 1968880 2474160 3161100 2040770 2030760 TRUE FALSE FALSE 1343346.514 1686424.993 2930442.105 1507389.586 2684102.125 2071967.512 1945535.504 2385835.269 2450333.82 1524528.905 0.881155162 1.106194174 1.922195175 0.988757629 1.760610845 1.359087063 1.276155209 1.564965584 1.607272785 1 20.53993207 -4.535172509 24.84166099 1.447170005 0.937414685 0.29003826 0.285249976 190.8897259 385725.4576 0.066853025 0.177139102 2.92E-05 4.535172509 -0.50975532 RPDPDS(ph)DEDEDYERER ddPTM_HeLa_A486_30min_R1 6 RPDPDSDEDEDYERER 16 2 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 0 RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER ;;;;; 184.32 6.83E-18 19774290000 1492332 1867315 2347191 825694 3289480 1888135 2446080 2651710 1722282 1725438 TRUE FALSE FALSE 1387727.233 1719342.159 3256086.215 1922257.36 2876882.745 1655196.101 1834044.912 2047973.519 1871570.79 1293377.094 1.07294867 1.329343288 2.517507253 1.486231177 2.224318614 1.279747499 1.418027983 1.583431104 1.447041856 1 20.30271153 RPDS(ph)PTRPTLR ddPTM_HeLa_A485_30min_R1 6 RPDSPTRPTLR 11 2 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 RPDS(0.989)PT(0.009)RPT(0.001)LR;RPDS(0.939)PT(0.031)RPT(0.031)LR;RPDS(0.996)PT(0.004)RPTLR;RPDS(0.984)PT(0.016)RPTLR;RPDS(0.951)PT(0.047)RPT(0.002)LR;RPDS(0.995)PT(0.001)RPT(0.003)LR ;;;;; 127.27 3.86E-05 8588840000 1899980 2702620 2566200 2016670 2789180 2339750 2801110 3095380 2209030 2721620 TRUE FALSE FALSE 2322623.996 3018667.899 3515544.168 2126835.576 2511479.446 2462255.692 2202629.966 2336233.202 2652362.059 2043170.222 1.136774592 1.477443175 1.720632051 1.040948793 1.22920715 1.205115299 1.078045256 1.143435421 1.2981601 1 20.96237797 -5.282706308 24.98269502 1.151689129 1.448199319 0.441104459 0.155930093 722.8727047 849171.8039 0.04389758 0.065181055 5.22E-06 5.282706308 0.29651019 RPDS(ph)PTRPTLR ddPTM_HeLa_A486_30min_R1 5 RPDSPTRPTLR 11 2 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 RPDS(0.959)PT(0.02)RPT(0.02)LR;RPDS(0.898)PT(0.088)RPT(0.014)LR;RPDS(0.981)PT(0.014)RPT(0.005)LR;RPDS(0.982)PT(0.013)RPT(0.005)LR;RPDS(0.964)PT(0.034)RPT(0.002)LR ;;;; 116.19 0.00023166 4767850000 1537550 1502700 1265780 504308 1719850 1411850 1512840 1496430 1349520 1516320 TRUE FALSE FALSE 1429775.685 1383620.579 1755923.915 1174054.51 1504130.376 1237670.302 1134311.431 1155725.556 1466497.48 1136623.602 1.257914829 1.217307626 1.544859627 1.032931665 1.323331992 1.088900757 0.997965754 1.016805874 1.290222618 1 20.11632315 -6.006152362 1.300367219 1.074058822 1.302054576 0.303724159 0.143387911 0.542205883 1.902261692 0.061192558 0.068964553 9.86E-07 6.006152362 0.227995754 RPDTTESLNS(ph)SLSNGTSDADLFDSHDDRDDDAEAGSVEEHK ddPTM_HeLa_A485_30min_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 0 RPDT(0.03)T(0.03)ES(0.025)LNS(0.497)S(0.413)LS(0.005)NGTSDADLFDSHDDRDDDAEAGSVEEHK 111.42 8.36E-07 239280000 81178 66103 75522 96458 105330 73601 105400 75967 71792 170320 TRUE FALSE FALSE 99235.76604 73833.17083 103460.7305 101727.2563 94842.97536 77454.63455 82880.42896 57335.97414 86199.99588 127862.3585 0.776113996 0.577442585 0.809157063 0.795599717 0.741758376 0.605765727 0.648200377 0.448419494 0.674162411 1 16.96423209 -9.932153889 4.98703761 0.999999818 0.672241252 0.454951684 0.106615686 151457695.9 24.64244985 2694.747983 0.027555834 1.17E-10 9.932153889 -0.327758565 RPDTTESLNS(ph)SLSNGTSDADLFDSHDDRDDDAEAGSVEEHK ddPTM_HeLa_A486_30min_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 0 RPDT(0.009)T(0.009)ES(0.07)LNS(0.445)S(0.445)LS(0.017)NGT(0.003)S(0.003)DADLFDSHDDRDDDAEAGSVEEHK 79.223 0.0002617 587160000 22812 25892 18630 8817 29620 31197 33009 32637 23690 31150 TRUE FALSE FALSE 21212.9966 23840.22362 25844.03493 20526.42159 25904.7834 27348.23133 24749.79907 25206.26756 25743.46827 23349.83725 0.908485844 1.021001704 1.106818632 0.879081998 1.109420298 1.171238627 1.059955956 1.079505064 1.102511679 1 14.51112487 -5.820793459 24.99999597 1.093929963 0.990996705 0.352251668 0.070797912 87.05733342 36667.88505 0.02170316 0.024609074 1.51E-06 5.820793459 -0.102933258 RPDTTESLNSSLSNGTS(ph)DADLFDSHDDRDDDAEAGSVEEHK ddPTM_HeLa_A485_30min_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 0 RPDTTESLNSS(0.001)LS(0.01)NGT(0.203)S(0.675)DADLFDS(0.107)HDDRDDDAEAGS(0.004)VEEHK 59.166 0.0038452 110200000 10378 15246 12580 9971 13171 15314 13122 18943 12298 17895 TRUE FALSE FALSE 12686.5503 17028.88708 17233.8655 10515.69048 11859.64899 16115.81736 10318.3775 14297.19955 14766.0958 13434.10583 0.944353904 1.267586194 1.282844256 0.78276073 0.882801516 1.199619652 0.768073263 1.064246458 1.099149879 1 13.71361268 -5.24692818 24.99294119 0.971028966 1.175193919 0.250059149 0.153632549 1108.09151 1908486.953 0.04164128 0.071717614 5.66E-06 5.24692818 0.204164952 RPDTTESLNSSLSNGTSDADLFDS(ph)HDDRDDDAEAGSVEEHK ddPTM_HeLa_A485_30min_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 0 RPDTTESLNSSLSNGTSDADLFDS(1)HDDRDDDAEAGSVEEHK 244.78 8.88E-53 521050000 86147 69199 72781 125930 82129 67660 108790 81153 71513 154560 TRUE FALSE FALSE 105310.1029 77291.2211 99705.72057 132809.237 73951.94839 71202.57298 85546.12777 61250.09951 85865.00314 116031.0365 0.907602881 0.666125404 0.859302163 1.144600971 0.637346271 0.613651098 0.737269358 0.527876863 0.740017548 1 16.82415123 RPDTTESLNSSLSNGTSDADLFDS(ph)HDDRDDDAEAGSVEEHK ddPTM_HeLa_A486_30min_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 0 RPDTTESLNSSLSNGTSDADLFDS(1)HDDRDDDAEAGSVEEHK 377.83 1.28E-173 312260000 61766 70657 39723 21317 65204 64295 82701 83522 58797 85400 TRUE FALSE FALSE 57436.52236 65057.88199 55104.80942 49627.0533 57025.50632 56362.9366 62008.33508 64505.86387 63893.5713 64015.28414 0.89723139 1.016286702 0.860807074 0.77523757 0.890810798 0.880460618 0.968648908 1.007663478 0.998098691 1 15.96612878 -6.876026569 3.469041006 1.000603825 0.886323836 0.481411237 0.054989313 0.238868509 5.576735821 0.027718778 0.017950256 1.33E-07 6.876026569 -0.114279989 RPDYAPMES(ph)S(ph)DEEDEEFQFIK ddPTM_HeLa_A485_30min_R1 5 RPDYAPMESSDEEDEEFQFIK 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 RPDY(0.004)APMES(0.998)S(0.998)DEEDEEFQFIK;RPDY(0.007)APMES(0.996)S(0.996)DEEDEEFQFIK;RPDY(0.095)APMES(0.953)S(0.953)DEEDEEFQFIK;RPDY(0.003)APMES(0.999)S(0.999)DEEDEEFQFIK;RPDY(0.005)APMES(0.997)S(0.997)DEEDEEFQFIK ;;;; 168.11 5.24E-14 419519000 309647.1 334976.4 291777.3 418616.1 402734.3 338689.7 429147.4 398500.6 338502.4 537007.8 TRUE FALSE FALSE 378527.0291 374148.9761 399717.8651 441484.0376 362636.659 356422.969 337456.5522 300767.703 406436.7268 403141.6384 0.938943024 0.928083186 0.99150727 1.095109003 0.899526679 0.88411351 0.837066976 0.746059634 1.008173525 1 18.62092727 -5.976314978 24.97284534 0.877389296 0.985947143 0.216996512 0.082801773 304.9130979 321490.5815 0.025708178 0.029148968 1.06E-06 5.976314978 0.108557848 RPDYAPMES(ph)S(ph)DEEDEEFQFIK ddPTM_HeLa_A486_30min_R1 5 RPDYAPMESSDEEDEEFQFIK 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 RPDY(0.042)APMES(0.979)S(0.979)DEEDEEFQFIK;RPDY(0.015)APMES(0.993)S(0.993)DEEDEEFQFIK;RPDY(0.001)APMES(0.999)S(0.999)DEEDEEFQFIK;RPDY(0.029)APMES(0.986)S(0.986)DEEDEEFQFIK;RPDYAPMES(1)S(1)DEEDEEFQFIK ;;;; 132.35 5.23E-07 464041000 303897 337114 229209 135685 334675 323715 352294 356417 295621 381535 TRUE FALSE FALSE 282595.3896 310399.8589 317964.8632 315881.5371 292696.9408 283778.3346 264146.315 275268.6296 321245.6663 285996.1526 0.98810906 1.085328792 1.111780212 1.104495757 1.023429644 0.992245287 0.923600939 0.962490674 1.123251706 1 18.12563621 -5.953277286 4.667055019 0.994314151 1.075860253 0.258108756 0.057117865 0.263802383 12.6767876 0.018860191 0.021177141 1.11E-06 5.953277286 0.081546102 RPDYAPMES(ph)S(ph)DEEDEEFQFIKK ddPTM_HeLa_A485_30min_R1 1 RPDYAPMESSDEEDEEFQFIKK 22 2 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 RPDY(0.001)APMES(0.999)S(1)DEEDEEFQFIKK 81.884 0.012126 226890000 253800 245600 194890 319230 355650 352570 477100 550490 261960 421050 TRUE FALSE FALSE 310256.9344 274320.7836 266987.921 336668.7266 320240.2372 371030.02 375163.6875 415481.4644 314532.9692 316089.9839 0.981546238 0.867856615 0.84465796 1.065104065 1.013129974 1.17381138 1.186888882 1.314440462 0.995074141 1 18.26997579 -5.714882622 1.492487611 1.153450272 0.898445451 0.464966566 0.101036267 0.308171522 1.426201431 0.03652109 0.052356225 1.93E-06 5.714882622 -0.255004821 RPDYAPMES(ph)S(ph)DEEDEEFQFIKK ddPTM_HeLa_A486_30min_R1 4 RPDYAPMESSDEEDEEFQFIKK 22 2 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 RPDY(0.002)APMES(0.999)S(1)DEEDEEFQFIKK;RPDYAPMES(1)S(1)DEEDEEFQFIKK;RPDYAPMES(1)S(1)DEEDEEFQFIKK;RPDY(0.043)APMES(0.978)S(0.978)DEEDEEFQFIKK ;;; 145.34 6.90E-09 913523000 1534623 1333663 750531 684588 1486667 1552352 1888760 1923210 1077096 2033130 TRUE FALSE FALSE 1427053.853 1227978.687 1041156.703 1593755.461 1300195.362 1360838.593 1416172.271 1485337.066 1170459.549 1524021.015 0.936374131 0.805749183 0.68316427 1.04575688 0.853134799 0.892926397 0.929234084 0.974617182 0.768007486 1 20.53945137 -5.260686669 24.99999971 0.91837262 0.808161202 0.243313557 0.092602905 100.553287 3339639.333 0.024952307 0.040192736 5.49E-06 5.260686669 -0.110211417 RPEAS(ph)PVQK ddPTM_HeLa_A485_30min_R1 1 RPEASPVQK 9 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RPEAS(1)PVQK 86.699 0.0024099 258580000 157060 125490 135270 195130 171590 131800 167210 134380 138690 281770 TRUE FALSE FALSE 191997.4551 140164.9639 185312.0021 205789.4578 154505.8971 138700.8442 131484.2175 101423.0943 166523.8109 211529.9246 0.907660963 0.662624752 0.876055728 0.972862153 0.730420991 0.65570318 0.621586841 0.479473977 0.78723524 1 17.69050225 -5.987461617 23.70816215 0.673287909 0.843723477 0.164341747 0.146587097 183.2070738 346412.0883 0.044443469 0.050353757 1.03E-06 5.987461617 0.170435568 RPEAS(ph)PVQK ddPTM_HeLa_A486_30min_R1 2 RPEASPVQK 9 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RPEAS(1)PVQK;RPEAS(1)PVQK ; 86.803 0.0023999 842360000 484980 618330 392880 206650 557010 592630 651040 598680 589760 671420 TRUE FALSE FALSE 450985.4064 569331.2789 545013.6577 481091.6435 487144.6119 519517.336 488142.906 462373.6331 640880.8717 503292.0618 0.896070971 1.131214502 1.082897385 0.955889592 0.967916343 1.032238288 0.969899871 0.918698442 1.273377667 1 18.94103632 -7.746532217 24.99998043 1.136688975 1.000151081 0.277244654 0.091543653 269.7987812 452469.42 0.060386265 0.022616013 1.79E-08 7.746532217 -0.136537894 RPEAS(ph)PVQKK ddPTM_HeLa_A485_30min_R1 2 RPEASPVQKK 10 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RPEAS(1)PVQKK;RPEAS(1)PVQKK ; 96.464 0.0010049 816730000 1040370 992060 587170 1223480 1077640 1202090 1590890 1823510 905190 1734130 TRUE FALSE FALSE 1271796.717 1108072.787 804388.6172 1290315.614 970346.3778 1265029.574 1250983.355 1376291.313 1086853.33 1301843.305 0.976919966 0.851156804 0.61788436 0.991145101 0.74536342 0.971721841 0.960932356 1.057186612 0.834857256 1 20.31212438 -6.288971709 23.46471277 0.968263374 0.833755293 0.245083262 0.112588334 488.5938013 416406.807 0.038758175 0.034192405 5.14E-07 6.288971709 -0.134508082 RPEAS(ph)PVQKK ddPTM_HeLa_A486_30min_R1 3 RPEASPVQKK 10 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RPEAS(1)PVQKK;RPEAS(1)PVQKK;RPEAS(1)PVQKK ;; 119.96 0.00012124 770100000 1357320 1027050 695403 593381 1114590 1395950 1657100 1450960 1125680 1823750 TRUE FALSE FALSE 1262178.877 945662.8175 964681.6651 1381420.956 974787.7291 1223731.882 1242476.053 1120608.082 1223254.849 1367071.129 0.923272279 0.691743683 0.705655795 1.010496767 0.713048288 0.895148654 0.908859844 0.81971454 0.894799709 1 20.38265688 -10.14800209 0.144442125 1.189509654 0.74285495 0.224408337 0.098972404 46.62840432 1.323428178 4.045030003 0.75120396 7.11E-11 10.14800209 -0.446654704 RPEGPGAQAPS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 RPEGPGAQAPS(0.777)S(0.223)PR;RPEGPGAQAPS(0.5)S(0.5)PR ; 183.31 5.72E-17 4385800000 2558230 3101460 2644350 796400 3179330 2843430 2805520 2735110 2516900 2896530 TRUE FALSE FALSE 2378911.288 2855689.014 3668313.138 1854059.448 2780548.785 2492636.516 2103549.222 2112385.16 2735066.919 2171220.035 1.095656474 1.315246253 1.68951699 0.853925175 1.280638876 1.148034965 0.968832817 0.97290239 1.259691268 1 21.05007451 -5.274954599 24.99936439 1.075936909 1.361650573 0.354264707 0.183959894 876.4181863 1621125.555 0.05181726 0.077348713 5.31E-06 5.274954599 0.285713664 RPEGPGAQAPSS(ph)PR ddPTM_HeLa_A485_30min_R1 7 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 RPEGPGAQAPS(0.143)S(0.857)PR;RPEGPGAQAPS(0.151)S(0.849)PR;RPEGPGAQAPS(0.007)S(0.993)PR;RPEGPGAQAPS(0.01)S(0.99)PR;RPEGPGAQAPS(0.037)S(0.963)PR;RPEGPGAQAPS(0.008)S(0.992)PR;RPEGPGAQAPS(0.06)S(0.94)PR ;;;;;; 141.22 2.77E-07 1.30E+11 10853320 13548420 14799110 11602770 15290250 11967450 13700630 12053080 12628140 14204020 TRUE FALSE FALSE 13267603.59 15132789.86 20273916.63 12236599.95 13767899.02 12594047.18 10773378.48 9097043.232 15162491.87 10663219.22 1.244239973 1.419157719 1.901294179 1.147552132 1.291157833 1.181073644 1.010330769 0.853123531 1.421943182 1 23.34613972 -5.47400284 24.87105154 1.125278297 1.51350695 0.416246162 0.212932011 358.8969436 182628.3116 0.060717197 0.090055989 3.36E-06 5.47400284 0.388228654 RPEGPGAQAPSS(ph)PR ddPTM_HeLa_A486_30min_R1 6 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 RPEGPGAQAPS(0.012)S(0.988)PR;RPEGPGAQAPS(0.002)S(0.998)PR;RPEGPGAQAPS(0.005)S(0.995)PR;RPEGPGAQAPS(0.022)S(0.978)PR;RPEGPGAQAPS(0.003)S(0.997)PR;RPEGPGAQAPS(0.006)S(0.994)PR ;;;;; 157.47 8.55E-09 1.07E+11 8480060 9498630 8411880 2613430 9952450 7858840 9300540 9184030 7911470 8645070 TRUE FALSE FALSE 7885651.585 8745923.965 11669185.21 6084197.115 8704120.918 6889296.224 6973446.521 7093026.855 8597242.59 6480288.202 1.21686742 1.349619599 1.800720099 0.938877551 1.343168798 1.063115715 1.076101294 1.094554229 1.326675963 1 22.62762655 -5.281608898 24.99184601 1.129350871 1.445124182 0.41348323 0.182694093 795.9734754 986280.7892 0.050601209 0.075155202 5.23E-06 5.281608898 0.315773311 RPELEDSTLR ddPTM_HeLa_A485_30min_R1 1 RPELEDSTLR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 108.35 0.00023773 0 34174 126120 227140 21655 119270 60564 44836 45619 55626 28585 FALSE FALSE TRUE 41775.8884 140868.6369 311168.5381 22837.95782 107395.06 63735.03739 35256.42232 34430.86872 66789.62797 21459.28557 1.946751129 6.564460707 14.50041462 1.064245953 5.004596247 2.970044701 1.642944832 1.604474138 3.112388237 1 14.38931443 RPEPSTLENITDDKYATVS(ph)SPSK ddPTM_HeLa_A486_30min_R1 1 RPEPSTLENITDDKYATVSSPSK 23 2 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 RPEPSTLENITDDKYATVS(0.961)S(0.038)PSK 246.27 3.57E-49 322780000 171750 191650 65547 93552 119880 218290 249760 183240 133210 274690 TRUE FALSE FALSE 159711.2119 176462.956 90928.55381 217793.7839 104843.5326 191359.5992 187267.4063 141520.2521 144756.7501 205905.8361 0.775651701 0.857008035 0.441602606 1.057734875 0.509181938 0.929354907 0.909480809 0.687305687 0.703024027 1 17.6516252 RPEPSTLENITDDKYATVSS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 RPEPSTLENITDDKYATVSSPSK 23 2 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 RPEPSTLENITDDKYATVS(0.027)S(0.953)PS(0.02)K;RPEPSTLENITDDKYAT(0.024)VS(0.164)S(0.799)PS(0.013)K ; 212.78 7.90E-30 2157260000 1438280 890504 704198 2419650 1231830 1106790 1712200 1199950 1010357 3387590 TRUE FALSE FALSE 1758220.424 994640.6964 964710.1443 2551829.353 1109184.68 1164739.813 1346374.483 905660.3811 1213126.382 2543126.157 0.691361858 0.391109459 0.379340263 1.003422243 0.436150081 0.457995294 0.529417103 0.356120902 0.477021708 1 21.2781716 -10.32207398 3.811107929 1.001248653 0.521158002 0.374789785 0.184131037 75589845.51 114983572.9 1039527.706 0.045991412 4.76E-11 10.32207398 -0.480090651 RPES(ph)PPSILTPPVVPTADK ddPTM_HeLa_A485_30min_R1 2 RPESPPSILTPPVVPTADK 19 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 RPES(0.928)PPS(0.072)ILT(0.001)PPVVPTADK;RPES(0.903)PPS(0.096)ILT(0.001)PPVVPTADK ; 73.981 0.00068828 72076000 299890 245135 238169 415490 311177 260757 345710 286249 273830 534840 TRUE FALSE FALSE 366599.4959 273801.4059 326277.6241 438187.1666 280195.1253 274409.8333 271846.2343 216045.9839 328785.1693 401514.231 0.913042347 0.681922046 0.812617833 1.091336577 0.697846063 0.683437378 0.677052551 0.538078024 0.818863054 1 18.6150916 RPES(ph)PPSILTPPVVPTADK ddPTM_HeLa_A486_30min_R1 2 RPESPPSILTPPVVPTADK 19 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 RPES(0.991)PPS(0.009)ILTPPVVPTADK;RPES(0.973)PPS(0.027)ILTPPVVPTADK ; 156.88 2.76E-09 238930000 479190 505810 324910 182664 442320 573940 555510 508820 476120 592160 TRUE FALSE FALSE 445601.2555 465727.7735 450723.8534 425251.0233 386840.1011 503133.1182 416515.5224 392972.7935 517390.465 443879.2817 1.003879374 1.049221698 1.015419895 0.958033053 0.871498439 1.133490881 0.938353151 0.885314566 1.165610756 1 18.75980785 -7.767235555 24.99983955 1.082805308 0.984388344 0.195426061 0.081770944 253.7416391 1094373.293 0.070767167 0.020240268 1.71E-08 7.767235555 -0.098416964 RPES(ph)PSEIS(ph)PIK ddPTM_HeLa_A485_30min_R1 4 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 0 RPES(0.945)PS(0.055)EIS(1)PIK;RPES(0.975)PS(0.025)EIS(1)PIK;RPES(0.999)PS(0.001)EIS(1)PIK;RPES(0.99)PS(0.01)EIS(1)PIK ;;; 160.45 1.42E-10 1600110000 2792970 2170720 2008240 4338980 2805410 2256050 3334920 2442880 2423630 5185910 TRUE FALSE FALSE 3414256.541 2424566.821 2751171.546 4576007.491 2526093.53 2374173.289 2622387.098 1843759.85 2910030.31 3893158.077 0.876988931 0.622776361 0.706668338 1.1753973 0.648854601 0.609832235 0.673588651 0.473589773 0.747472939 1 21.89250949 RPES(ph)PSEIS(ph)PIK ddPTM_HeLa_A486_30min_R1 4 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 0 RPES(0.967)PS(0.033)EIS(1)PIK;RPES(0.788)PS(0.212)EIS(1)PIK;RPES(0.942)PS(0.058)EIS(1)PIK;RPES(0.965)PS(0.035)EIS(1)PIK ;;; 154.39 3.26E-08 1634040000 2353080 2623050 1392090 1085130 2006930 2894290 3064530 2709290 2141270 3363250 TRUE FALSE FALSE 2188141.243 2415189.965 1931144.529 2526237.479 1755202.126 2537221.927 2297752.181 2092443.81 2326877.008 2521070.309 0.86794138 0.958001828 0.766001854 1.002049594 0.69621308 1.006406651 0.911419318 0.829982331 0.922971882 1 21.26560492 RPES(ph)PSEIS(ph)PIKGSVR ddPTM_HeLa_A485_30min_R1 4 RPESPSEISPIKGSVR 16 2 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 0 RPES(0.999)PS(0.003)EIS(0.998)PIKGSVR;RPES(0.94)PS(0.102)EIS(0.957)PIKGS(0.002)VR;RPES(0.986)PS(0.015)EIS(1)PIKGSVR;RPES(0.99)PS(0.01)EIS(1)PIKGSVR ;;; 133.74 7.07E-06 7413250000 2379500 2598990 2200600 2931940 3455500 2990940 4084730 4432880 2460800 3903000 TRUE FALSE FALSE 2908811.566 2902919.272 3014693.515 3092104.458 3111458.287 3147540.994 3211994.066 3345709.23 2954659.988 2930053.929 0.99275018 0.990739195 1.028886699 1.05530633 1.06191161 1.074226301 1.096223532 1.141859266 1.008397818 1 21.48249579 -5.087899569 1.334211769 1.073702517 0.98552452 0.333832757 0.038758828 0.491999559 1.617051869 0.012448645 0.039033989 8.17E-06 5.087899569 -0.088177997 RPES(ph)PSEIS(ph)PIKGSVR ddPTM_HeLa_A486_30min_R1 6 RPESPSEISPIKGSVR 16 2 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 0 RPES(1)PS(0.003)EIS(0.997)PIKGSVR;RPES(0.949)PS(0.051)EIS(0.999)PIKGSVR;RPES(0.976)PS(0.024)EIS(1)PIKGSVR;RPES(0.999)PS(0.004)EIS(0.94)PIKGS(0.058)VR;RPES(0.98)PS(0.087)EIS(0.927)PIKGS(0.006)VR;RPES(0.973)PS(0.071)EIS(0.529)PIKGS(0.426)VR ;;;;; 179.17 8.77E-18 8685950000 3884480 3843000 2467760 1767630 3966520 3895910 4994510 4880630 2908200 5014170 TRUE FALSE FALSE 3612198.011 3538466.684 3423342.761 4115131.971 3469002.075 3415272.235 3744830.771 3769417.092 3160285.118 3758589.195 0.961051561 0.941434804 0.910805247 1.094860799 0.92295324 0.908658025 0.996339471 1.002880841 0.840816847 1 21.84175981 RPES(ph)PSEISPIK ddPTM_HeLa_A485_30min_R1 5 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 RPES(0.972)PS(0.028)EISPIK;RPES(0.968)PS(0.032)EISPIK;RPES(0.997)PS(0.003)EISPIK;RPES(1)PSEISPIK;RPES(0.993)PS(0.007)EISPIK ;;;; 217.88 3.95E-23 6821990000 3385770 3478820 3333450 4308430 4628330 3861850 4894130 4374470 3905790 5608890 TRUE FALSE FALSE 4138922.856 3885637.737 4566631.871 4543788.621 4167517.214 4064050.494 3848459.144 3301624.374 4689646.227 4210696.947 0.982954344 0.922801566 1.084531119 1.079106067 0.989745229 0.965172879 0.913972008 0.784104013 1.113745844 1 22.00562761 -6.299240268 2.862435388 0.936282967 1.016176542 0.082045 0.08845512 0.559997439 9.162546434 0.03344932 0.030265967 5.02E-07 6.299240268 0.079893575 RPES(ph)PSEISPIK ddPTM_HeLa_A486_30min_R1 5 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 RPES(0.979)PS(0.021)EISPIK;RPES(0.984)PS(0.016)EISPIK;RPES(0.985)PS(0.015)EISPIK;RPES(0.99)PS(0.01)EISPIK;RPES(0.761)PS(0.239)EISPIK ;;;; 180.64 4.77E-13 5116330000 3231290 3567360 2374300 1265955 3724220 3581540 4108000 4008790 2934520 4056360 TRUE FALSE FALSE 3004793.257 3284669.401 3293692.546 2947207.218 3257093.601 3139686.009 3080134.95 3096076.028 3188886.556 3040621.054 0.988216948 1.080262665 1.083230198 0.969278041 1.07119353 1.0325805 1.012995337 1.018238042 1.048761585 1 21.5359346 -13.53213981 0.140140166 0.894174504 1.04794459 0.064780978 0.036407958 325.6862651 3.156411154 9.767949095 0.226574519 2.94E-14 13.53213981 0.153770085 RPES(ph)PSEISPIKGSVR ddPTM_HeLa_A485_30min_R1 3 RPESPSEISPIKGSVR 16 2 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 RPES(0.997)PS(0.003)EISPIKGSVR;RPES(0.836)PS(0.155)EIS(0.009)PIKGS(0.001)VR;RPES(0.999)PS(0.001)EISPIKGSVR ;; 133.21 5.23E-06 1631680000 231301 735090 354602 115138 539130 775150 785510 1601740 324358 182686 TRUE FALSE FALSE 282753.1095 821052.3811 485784.036 121427.6974 485452.3242 815735.6554 617679.3715 1208910.754 389453.6754 137145.7423 2.06169805 5.986714333 3.542100746 0.885391667 3.539682065 5.947947357 4.503817335 8.814788804 2.839706643 1 17.06535031 -6.14115631 6.416945707 5.095234032 3.222182035 0.071918231 2.265990533 0.50724545 24.69569498 0.733133475 0.734474911 7.23E-07 6.14115631 -1.873051998 RPESFTT(ph)PEGPKPR ddPTM_HeLa_A485_30min_R1 4 RPESFTTPEGPKPR 14 2 F8W8D3;Q14493;H7C4H8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 RPESFT(0.245)T(0.755)PEGPKPR;RPES(0.009)FT(0.249)T(0.742)PEGPKPR;RPES(0.159)FT(0.159)T(0.682)PEGPKPR;RPES(0.157)FT(0.157)T(0.685)PEGPKPR ;;; 113.14 0.00021539 2109280000 404940 486761 398856 407720 588189 556596 652325 731758 434149 566508 TRUE FALSE FALSE 495017.506 543683.4647 546409.4322 429992.7112 529626.8379 585738.5059 512950.4347 552293.2031 521278.722 425287.9814 1.163958371 1.27838897 1.284798668 1.011062456 1.245336951 1.377275003 1.206124925 1.298633461 1.225707626 1 18.69808056 -8.065441698 21.0763377 0.999999999 1.235127 0.364404329 0.092083253 5789.459936 1864568.528 0.091110809 0.02352471 8.60E-09 8.065441698 0.235127001 RPESFTT(ph)PEGPKPR ddPTM_HeLa_A486_30min_R1 4 RPESFTTPEGPKPR 14 2 F8W8D3;Q14493;H7C4H8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 RPES(0.001)FT(0.228)T(0.771)PEGPKPR;RPES(0.003)FT(0.295)T(0.703)PEGPKPR;RPES(0.03)FT(0.24)T(0.731)PEGPKPR;RPES(0.002)FT(0.213)T(0.785)PEGPKPR ;;; 116.87 0.00014567 1951980000 491758 557341 360507 210573 600019 533044 570619 583423 460554 632280 TRUE FALSE FALSE 457288.3036 513175.2694 500104.9651 490224.5858 524759.0221 467282.4509 427844.0908 450590.3189 500475.1915 473952.9725 0.964838982 1.082755672 1.055178455 1.034331704 1.107196394 0.985925773 0.902714226 0.950706811 1.0559596 1 18.85438439 -6.467774042 10.67747532 0.969123205 1.04996946 0.322649243 0.050112021 0.843968211 161.7484819 0.01759181 0.015482454 3.41E-07 6.467774042 0.080846254 RPFDPNDR ddPTM_HeLa_A485_30min_R1 1 RPFDPNDR 8 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 0 86.136 0.01122 221790000 30149 46325 47056 32502 46193 41718 40936 59226 34451 37615 FALSE FALSE TRUE 36855.54104 51742.30578 64463.97256 34277.50196 41593.86273 43902.28997 32189.68918 44700.73064 41364.9997 28238.27275 1.305162726 1.832346696 2.282858202 1.213866806 1.472960584 1.554708758 1.139931237 1.582983882 1.464855873 1 14.78536423 -5.292841462 24.99943184 1.3766044 1.80934528 0.355188962 0.281896957 742.0831014 590776.2342 0.078824298 0.116928404 5.10E-06 5.292841462 0.43274088 RPFDPNDR ddPTM_HeLa_A486_30min_R1 2 RPFDPNDR 8 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2;F8WEA1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ; ; 87.476 0.01066 164993000 60496 64039 63837 16980.7 81920 50092 58489 60578 54034 63820 FALSE FALSE TRUE 56255.5428 58964.31641 88556.39601 39531.92776 71644.82973 43912.15834 43854.43357 46785.71181 58717.71063 47839.0566 1.175933365 1.232556003 1.851131738 0.826352578 1.497622128 0.917914387 0.916707742 0.977981489 1.227401099 1 15.54590132 -6.272987746 24.88546454 1.000918953 1.314490434 0.267555157 0.255247616 978.6645107 2108908.62 0.087658276 0.077960714 5.33E-07 6.272987746 0.313571481 RPFGISALIVGFDFDGTPR ddPTM_HeLa_A485_30min_R1 2 RPFGISALIVGFDFDGTPR 19 1 O14818;H0Y586;O14818-2 O14818 PSMA7 Proteasome subunit alpha type-7 0 0 ; ; 129.98 6.19E-07 53358000 35295.4 40889.3 37061.6 33355.3 42869 32351.9 47525 54634 26248 51179 FALSE FALSE TRUE 43146.73996 45670.94795 50772.2281 35177.41558 38600.81184 34045.79546 37370.89551 41234.92584 31515.73284 38421.01718 1.122998378 1.188697002 1.32147017 0.915577415 1.004679591 0.886124261 0.972668041 1.073238786 0.820273255 1 15.22960809 -5.271607067 24.99006773 0.956433106 1.208819367 0.686386383 0.079840678 372.4568572 915421.1306 0.021861488 0.032842797 5.35E-06 5.271607067 0.252386261 RPFGISALIVGFDFDGTPR ddPTM_HeLa_A486_30min_R1 2 RPFGISALIVGFDFDGTPR 19 1 O14818;H0Y586;O14818-2 O14818 PSMA7 Proteasome subunit alpha type-7 0 0 ; ; 144.88 7.58E-10 33664000 24337.2 26642.5 21470.8 17894 30913.6 24930.9 27452.8 27250.3 23140.5 30040 FALSE FALSE TRUE 22631.28796 24531.25127 29784.86877 41658.13631 27036.12803 21855.17904 20583.81907 21046.00156 25146.33717 22517.78847 1.005040437 1.089416543 1.3227262 1.850010109 1.200656453 0.970573956 0.914113706 0.934638923 1.116732098 1 14.45877752 -6.142443627 4.63277213 0.979909823 1.323777768 0.341712015 0.215275045 0.283732212 9.544949668 0.079308541 0.079544307 7.20E-07 6.142443627 0.343867945 RPFGVSLLYIGWDK ddPTM_HeLa_A485_30min_R1 2 RPFGVSLLYIGWDK 14 1 H0YLC2;H0YMI6;H0YMA1;H0YMZ1;H0YL69;P25789;H0YMV3;H0YKS0;H0YKT8;H0YN18;P25789-2 H0YLC2 PSMA4 Proteasome subunit alpha type;Proteasome subunit alpha type-4;Proteasome subunit beta type 0 0 ; ; 109.83 0.00091036 24558000 37839.1 23228.3 24474.2 43056.4 35284.6 25103.4 44870 30477 19165.7 58550.5 FALSE FALSE TRUE 46256.27725 25944.64763 33528.22504 45408.46211 31771.54133 26417.77521 35283.15795 23002.46796 23012.08019 43954.93789 1.052356788 0.590255586 0.762786314 1.033068508 0.722820754 0.601019509 0.802712042 0.523319314 0.523537998 1 15.42373763 -5.987275291 24.8747468 0.666757654 0.839020819 0.157821238 0.180500573 393.1624071 768564.0339 0.054883797 0.062196583 1.03E-06 5.987275291 0.172263165 RPFGVSLLYIGWDK ddPTM_HeLa_A486_30min_R1 2 RPFGVSLLYIGWDK 14 1 H0YLC2;H0YMI6;H0YMA1;H0YMZ1;H0YL69;P25789;H0YMV3;H0YKS0;H0YKT8;H0YN18;P25789-2 H0YLC2 PSMA4 Proteasome subunit alpha type;Proteasome subunit alpha type-4;Proteasome subunit beta type 0 0 ; ; 108.89 0.00098704 54599000 93754 141673 134507 108207 165332 221350 270310 206200 162026 208330 FALSE FALSE TRUE 87182.32875 130446.3155 186591.7126 251911.3645 144594.5189 194042.0875 202675.579 159252.7613 176070.5441 156162.812 0.558278425 0.835322532 1.194853693 1.613132866 0.925921588 1.242562714 1.297847909 1.019786717 1.12748062 1 17.25269141 -4.57467596 3.015233155 1.191571339 0.586149557 0.545817627 0.183250126 0.189797087 3.30385548 0.048479697 0.193303035 2.66E-05 4.57467596 -0.605421783 RPFSQCLSTIISPLFAELK ddPTM_HeLa_A485_30min_R1 1 RPFSQCLSTIISPLFAELK 19 1 B4DR80;Q9Y6E0-2;H0Y630;Q9Y6E0;Q5JV99 B4DR80 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit 0 0 156.39 2.67E-14 5521800 7988 8812.5 7209.7 9099.2 9741.6 9218.8 13022 12086 6445.9 13059 FALSE FALSE TRUE 9764.903042 9843.045216 9876.868051 9596.266256 8771.692099 9701.482113 10239.74332 9121.88955 7739.533005 9803.631633 0.996049567 1.004020304 1.007470336 0.978848106 0.894739055 0.989580441 1.044484708 0.930460251 0.789455713 1 13.25910056 -7.520240878 24.99900521 0.88313789 0.985542173 0.290723622 0.059284349 121.649238 1152933.244 0.037382002 0.01467113 3.02E-08 7.520240878 0.102404284 RPGAPSLS(ph)PAPR ddPTM_HeLa_A485_30min_R1 4 RPGAPSLSPAPR 12 1 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 0 RPGAPS(0.002)LS(0.998)PAPR;RPGAPSLS(1)PAPR;RPGAPS(0.004)LS(0.996)PAPR;RPGAPS(0.005)LS(0.995)PAPR ;;; 122.63 3.35E-05 2110720000 831960 1382210 1354720 960550 1530190 1313100 1483400 1765150 1289430 1283050 TRUE FALSE FALSE 1017026.632 1543847.436 1855887.303 1013022.414 1377838.911 1381851.886 1166459.472 1332244.195 1548206.774 963209.2478 1.055872993 1.602816251 1.926774797 1.051715831 1.430466863 1.434633117 1.211013572 1.38313061 1.607342099 1 19.87748972 -5.283237757 24.99357937 1.325589638 1.535921008 0.13061758 0.262186224 1700.765446 1950059.201 0.073423786 0.109018589 5.21E-06 5.283237757 0.21033137 RPGAPSLS(ph)PAPR ddPTM_HeLa_A486_30min_R1 4 RPGAPSLSPAPR 12 1 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 0 RPGAPS(0.002)LS(0.998)PAPR;RPGAPS(0.004)LS(0.996)PAPR;RPGAPS(0.003)LS(0.997)PAPR;RPGAPS(0.008)LS(0.992)PAPR ;;; 121.13 5.96E-05 1836070000 846690 925360 842480 329908 1097940 810720 934160 1000890 744140 953420 TRUE FALSE FALSE 787341.4033 852031.1035 1168710.818 768042.4966 960226.1273 710701.6092 700423.2875 773009.1963 808642.6544 714677.4263 1.10167381 1.192189752 1.635298353 1.07467015 1.343579763 0.994436907 0.980055143 1.081619718 1.131479217 1 19.44693269 -6.265074833 24.72289048 1.039027981 1.274688543 0.369909481 0.151288991 309.7255827 2106278.503 0.052648886 0.048267129 5.43E-07 6.265074833 0.235660562 RPGFS(ph)PTSHR ddPTM_HeLa_A485_30min_R1 5 RPGFSPTSHR 10 1 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 RPGFS(0.99)PT(0.008)S(0.003)HR;RPGFS(0.984)PT(0.01)S(0.007)HR;RPGFS(0.75)PT(0.197)S(0.052)HR;RPGFS(0.942)PT(0.053)S(0.006)HR;RPGFS(0.955)PT(0.036)S(0.01)HR ;;;; 128.22 5.55E-05 3464490000 562070 684386 749611 603198 785740 631027 673299 737175 683913 811530 TRUE FALSE FALSE 687100.5324 764418.9893 1026923.303 636149.1794 707508.9667 664066.598 529443.1683 556381.6754 821168.0659 609230.5061 1.127817018 1.254728681 1.685607159 1.04418471 1.161315725 1.090008776 0.869035879 0.913253144 1.347877458 1 19.21662866 -5.396244671 20.06231656 1.054544885 1.349167643 0.358138244 0.180910403 4.148070999 644.0190759 0.051762095 0.076775555 4.02E-06 5.396244671 0.294622758 RPGFS(ph)PTSHR ddPTM_HeLa_A486_30min_R1 3 RPGFSPTSHR 10 1 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 RPGFS(0.991)PT(0.004)S(0.005)HR;RPGFS(0.531)PT(0.36)S(0.11)HR;RPGFS(0.971)PT(0.011)S(0.018)HR ;; 108.23 0.00048934 1250890000 319096 392716 367533 112860 420079 348879 367126 368065 343695 360657 TRUE FALSE FALSE 296729.0182 361595.7539 509851.6205 262743.7836 367388.7747 305837.8561 275267.1917 284264.6343 373486.7593 270346.1397 1.097589255 1.337528822 1.885921586 0.971879176 1.358956984 1.131282497 1.018202783 1.051483978 1.381513195 1 18.04444823 RPGFSPT(ph)SHR ddPTM_HeLa_A485_30min_R1 1 RPGFSPTSHR 10 1 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 RPGFS(0.032)PT(0.78)S(0.188)HR 109.15 0.00068325 449410000 127890 169730 186260 137280 189530 155510 175370 163500 173960 187190 TRUE FALSE FALSE 156338.6893 189578.447 255165.3249 144779.2588 170659.7277 163652.2631 137900.7669 123401.3686 208872.1763 140526.978 1.112517266 1.349053753 1.815774655 1.030259534 1.214426797 1.164561179 0.981311694 0.878132942 1.486349307 1 17.1004876 RPGFSPT(ph)SHR ddPTM_HeLa_A486_30min_R1 2 RPGFSPTSHR 10 1 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 RPGFS(0.04)PT(0.48)S(0.48)HR;RPGFS(0.354)PT(0.642)S(0.004)HR ; 93.348 0.0023651 1632590000 386590 440890 375980 105919 421780 379090 401250 407230 369190 394660 TRUE FALSE FALSE 359492.0374 405952.2707 521569.5251 246584.7848 368876.4195 332321.7301 300853.006 314512.6188 401191.6865 295834.5672 1.215179283 1.372227304 1.763044563 0.833522557 1.246901006 1.123336374 1.016963666 1.063136812 1.356135256 1 18.17443111 -5.267095517 24.99905507 1.098763545 1.442358073 0.445079886 0.183364311 428.0995862 1892119.934 0.050649163 0.077520592 5.41E-06 5.267095517 0.343594528 RPGHDDGQRPS(ph)GGAAAAPR ddPTM_HeLa_A485_30min_R1 1 RPGHDDGQRPSGGAAAAPR 19 2 Q8N726;Q8N726-2 Q8N726 CDKN2A Tumor suppressor ARF 1 0 RPGHDDGQRPS(1)GGAAAAPR 127.28 2.19E-06 55793000 13859 15707 18482 11391 19261 16174 18596 17509 15779 15346 TRUE FALSE FALSE 16941.88674 17543.79702 25319.2609 12013.26149 17343.30721 17020.84563 14622.81268 13214.8903 18945.70057 11520.52462 1.47058292 1.522829697 2.197752423 1.042770349 1.50542686 1.477436678 1.269283576 1.147073656 1.644517172 1 13.4919188 -8.439871785 0.061949076 3.80E-11 2.510164227 0.23087015 0.290118761 81.5153281 2.298751368 52.0545507 39.20871763 3.63E-09 8.439871785 2.510164227 RPGHDDGQRPS(ph)GGAAAAPR ddPTM_HeLa_A486_30min_R1 2 RPGHDDGQRPSGGAAAAPR 19 2 Q8N726;Q8N726-2 Q8N726 CDKN2A Tumor suppressor ARF 1 0 RPGHDDGQRPS(1)GGAAAAPR;RPGHDDGQRPS(1)GGAAAAPR ; 126.31 2.34E-06 113769000 24430 23031 23660.5 8209.5 30882 20402.3 20930 23274 16575 20477.9 TRUE FALSE FALSE 22717.58316 21205.93968 32822.47925 19112.13089 27008.4916 17885.27166 15693.09263 17975.01827 18011.73435 15350.10055 1.479963149 1.381485392 2.138258257 1.245081804 1.759499327 1.165156645 1.022344614 1.171003291 1.173395203 1 13.90596049 -6.343169718 5.983799333 1.106365826 1.597991113 0.535208861 0.230696936 0.189095833 11.02372614 0.079711795 0.070188274 4.54E-07 6.343169718 0.491625287 RPGHDDGQRPSGGAAAAPR ddPTM_HeLa_A485_30min_R1 4 RPGHDDGQRPSGGAAAAPR 19 2 Q8N726;Q8N726-2 Q8N726 CDKN2A Tumor suppressor ARF 0 0 ;;; ;;; 141.07 1.22E-07 188744000 44787.2 79948.2 70379.5 42430.6 70910.2 64889.6 65639.6 70390.3 60642.1 62067.8 FALSE FALSE TRUE 54749.95813 89297.44653 96415.80579 44748.47624 63850.13151 68287.11912 51615.16323 53126.96856 72812.41323 46595.43973 1.175006791 1.91644176 2.0692112 0.960361711 1.370308594 1.465532239 1.107729931 1.14017528 1.562651059 1 15.50790115 -5.264524264 24.99779702 1.246000941 1.739842097 0.387298904 0.281966027 272.9419262 2211739.601 0.077964458 0.121512191 5.44E-06 5.264524264 0.493841156 RPGHDDGQRPSGGAAAAPR ddPTM_HeLa_A486_30min_R1 1 RPGHDDGQRPSGGAAAAPR 19 2 Q8N726;Q8N726-2 Q8N726 CDKN2A Tumor suppressor ARF 0 0 108.71 5.03E-05 52104000 11813 13140 12702 3192.5 15837 10344 12333 11317 9862 12282 FALSE FALSE TRUE 10984.9697 12098.73854 17620.55457 7432.30134 13850.57579 9067.86245 9247.152955 8740.366148 10716.8461 9206.507258 1.193174501 1.314150764 1.913923932 0.807287838 1.504433266 0.984940564 1.004414888 0.9493683 1.16405123 1 13.16843822 -5.972445608 1.166413821 1.015157794 1.400998003 0.241180442 0.269279399 0.663598335 1.905108431 0.119956323 0.141980018 1.07E-06 5.972445608 0.385840209 RPGHGS(ph)LTNISR ddPTM_HeLa_A485_30min_R1 4 RPGHGSLTNISR 12 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 RPGHGS(0.994)LT(0.006)NISR;RPGHGS(0.994)LT(0.006)NISR;RPGHGS(0.999)LT(0.001)NISR;RPGHGS(1)LTNISR ;;; 191.91 1.47E-13 1066850000 417624 466669 456735 406409 548880 398963 487600 457100 465920 572420 TRUE FALSE FALSE 510523.018 521241.8801 625700.2828 428610.0946 494231.58 419852.0858 383420.2767 344995.5083 559425.8703 429726.2286 1.188019218 1.212962685 1.456043967 0.997402686 1.150108015 0.977022248 0.892243133 0.802826277 1.301819235 1 18.71305831 -5.286903415 24.62389877 1.00776932 1.278404029 0.420588991 0.143942616 579.5945629 560470.735 0.040837679 0.060600616 5.17E-06 5.286903415 0.270634709 RPGHGS(ph)LTNISR ddPTM_HeLa_A486_30min_R1 4 RPGHGSLTNISR 12 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 RPGHGS(0.998)LT(0.002)NISR;RPGHGS(0.939)LT(0.061)NISR;RPGHGS(0.878)LT(0.122)NISR;RPGHGS(1)LTNISR ;;; 153.03 5.38E-08 1033110000 431824 415590 373391 99461 455066 371792 381468 401691 401397 401665 TRUE FALSE FALSE 401555.3675 382657.1348 517977.995 231550.2345 397987.379 325924.0831 286020.6716 310234.7282 436190.4151 301085.4696 1.333692284 1.27092528 1.720368624 0.769051508 1.321841866 1.082496886 0.949965045 1.030387579 1.448726223 1 18.19981356 -5.258669952 24.99814061 1.09133745 1.424588362 0.377449101 0.208856291 272.0269047 2455429.263 0.055939478 0.091657412 5.51E-06 5.258669952 0.333250912 RPGNSTVTSS(ph)PPVT(ph)PK ddPTM_HeLa_A485_30min_R1 1 RPGNSTVTSSPPVTPK 16 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 2 0 RPGNS(0.013)T(0.015)VT(0.059)S(0.335)S(0.58)PPVT(0.998)PK 55.734 0.0043454 0 188770 202870 146530 279690 241270 210180 312830 338090 161330 498610 TRUE FALSE FALSE 230761.2353 226593.8818 200737.5446 294968.7565 217248.3116 221184.6998 245991.3149 255172.8974 193707.4512 374315.7032 0.616488256 0.605354998 0.536278716 0.788021325 0.580387918 0.590904143 0.657176049 0.681705029 0.517497528 1 18.51389605 -10.572827 3.212415562 1.016002145 0.622390296 0.708377087 0.073253147 35375477.71 41071426.07 4835921.154 0.017867973 2.67E-11 10.572827 -0.393611849 RPGQSFHVNSEVNSVLS(ph)PR ddPTM_HeLa_A485_30min_R1 4 RPGQSFHVNSEVNSVLSPR 19 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNSVLS(1)PR ;;; 247.22 4.74E-46 7357500000 758850 1611220 1680630 375761 1678980 987970 1235400 1406270 1199260 788560 TRUE FALSE FALSE 927653.5645 1799638.163 2302364.974 396287.872 1511814.856 1039698.582 971446.6977 1061380.078 1439940.482 591986.5044 1.567018095 3.039998632 3.889218685 0.66942045 2.553799529 1.756287641 1.640994669 1.792912625 2.432387345 1 19.17520476 -5.259656092 24.99997771 1.761725073 2.852870414 0.323635665 0.750236937 195.1426616 2735694.986 0.202247324 0.328332099 5.50E-06 5.259656092 1.091145341 RPGQSFHVNSEVNSVLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 RPGQSFHVNSEVNSVLSPR 19 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNSVLS(1)PR;RPGQSFHVNSEVNSVLS(1)PR ;;; 272.18 2.03E-69 6088900000 2190530 2246150 2570810 132708 2871310 1433870 1693490 1668630 2063990 850420 TRUE FALSE FALSE 2036985.159 2068156.894 3566296.481 308950.9307 2511163.526 1256973.698 1269760.89 1288719.375 2242898.315 637469.2967 3.195424736 3.24432393 5.594459999 0.484652253 3.939269764 1.971818415 1.991877721 2.021617953 3.518441322 1 19.28199633 -5.259525087 24.99998933 2.237817371 3.934694867 0.358471668 1.144406296 200.6721376 2620690.24 0.302062597 0.491184767 5.50E-06 5.259525087 1.696877497 RPGS(ph)VS(ph)STDQER ddPTM_HeLa_A485_30min_R1 2 RPGSVSSTDQER 12 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RPGS(0.945)VS(0.785)S(0.251)T(0.02)DQER;RPGS(0.989)VS(0.766)S(0.194)T(0.051)DQER ; 70.165 0.0057341 1127090000 928200 1146430 1140690 990020 1303910 1081480 1355650 1119640 1092280 1348320 TRUE FALSE FALSE 1134674.888 1280495.016 1562678.699 1044102.286 1174088.142 1138104.621 1066004.303 845046.5345 1311490.577 1012208.638 1.120989137 1.265050473 1.54383063 1.031508966 1.159927013 1.124377503 1.053146815 0.834854103 1.295672184 1 19.94907526 -5.304978574 24.99292413 1.06961517 1.305466448 0.355684839 0.147112921 489.017494 280711.0222 0.041165556 0.061058844 4.95E-06 5.304978574 0.235851278 RPGS(ph)VSS(ph)TDQER ddPTM_HeLa_A486_30min_R1 2 RPGSVSSTDQER 12 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RPGS(0.854)VS(0.155)S(0.917)T(0.074)DQER;RPGS(0.999)VS(0.044)S(0.887)T(0.07)DQER ; 161.45 1.42E-10 1295380000 1045010 1244400 1046900 377550 1384990 1022540 1144370 1198980 1003530 1160260 TRUE FALSE FALSE 971760.1954 1145789.212 1452287.717 878955.4803 1211271.64 896389.4112 858036.5221 925998.4275 1090516.788 869723.344 1.117321045 1.317418027 1.669827224 1.010615027 1.392709128 1.030660402 0.986562598 1.06470458 1.253866297 1 19.73019703 -6.268883552 24.8355829 1.066165541 1.306751758 0.306783748 0.176101118 681.6283133 2274072.032 0.061562526 0.055364501 5.38E-07 6.268883552 0.240586217 RPGS(ph)VSSTDQER ddPTM_HeLa_A485_30min_R1 4 RPGSVSSTDQER 12 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RPGS(0.992)VS(0.005)S(0.002)TDQER;RPGS(1)VSSTDQER;RPGS(0.999)VS(0.001)STDQER;RPGS(0.999)VS(0.001)STDQER ;;; 198.98 1.43E-16 2712280000 1163041 1841940 1941820 957992 1772310 1529942 1614200 1496630 1541930 1479710 TRUE FALSE FALSE 1421755.458 2057338.86 2660180.024 1010324.677 1595852.593 1610047.397 1269312.983 1129579.146 1851381.208 1110845.529 1.279885835 1.852047658 2.39473442 0.909509604 1.436610718 1.449389096 1.142654807 1.016864286 1.666641454 1 20.08322678 -5.27452522 24.99959722 1.246272043 1.843205182 0.412413599 0.33364814 749.2446245 1431378.649 0.093538063 0.139673893 5.31E-06 5.27452522 0.59693314 RPGS(ph)VSSTDQER ddPTM_HeLa_A486_30min_R1 4 RPGSVSSTDQER 12 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RPGS(0.98)VS(0.019)S(0.001)TDQER;RPGS(0.957)VS(0.003)S(0.02)T(0.02)DQER;RPGS(0.99)VS(0.007)S(0.001)T(0.001)DQER;RPGS(0.681)VS(0.025)S(0.025)T(0.27)DQER ;;; 189.59 2.15E-13 2796777000 1465219 1682308 1467941 490881 1895600 1368775 1490176 1596144 1352054 1521792 TRUE FALSE FALSE 1362514.714 1548995.787 2036367.068 1142795.776 1657836.172 1199909.457 1117318.203 1232736.855 1469251.129 1140725.378 1.194428335 1.357904205 1.785151016 1.001814984 1.453317516 1.051882846 0.979480447 1.080660498 1.287997232 1 20.12152008 -6.040883936 1.474771316 1.080678771 1.392987126 0.281015533 0.207639856 0.522672634 2.317445286 0.085815657 0.092732823 9.10E-07 6.040883936 0.312308355 RPGTQGHLGPEKEEEES(ph)DGEPEDSSTS ddPTM_HeLa_A485_30min_R1 4 RPGTQGHLGPEKEEEESDGEPEDSSTS 27 2 Q8IYB7;H7C1Q8 Q8IYB7 DIS3L2 DIS3-like exonuclease 2 1 0 RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGTQGHLGPEKEEEES(0.875)DGEPEDS(0.03)S(0.03)T(0.033)S(0.033);RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGTQGHLGPEKEEEES(1)DGEPEDSSTS ;;; 126.67 3.67E-06 3615870000 1373470 1073370 1141930 2694910 2520330 1611310 2808380 2553580 1694590 3931820 TRUE FALSE FALSE 1678993.663 1198891.284 1564377.427 2842126.109 2269397.096 1695675.7 2208346.671 1927310.501 2034678.669 2951689.634 0.568824596 0.406171188 0.529993875 0.962881082 0.768846789 0.574476287 0.748163576 0.652951611 0.689326766 1 21.4931096 -14 0.049245099 2.287208998 3.73E-11 0.402857442 0.137307614 673.1550365 2.44804037 116.6923783 26.6305425 1.00E-14 14 -2.287208998 RPGTQGHLGPEKEEEES(ph)DGEPEDSSTS ddPTM_HeLa_A486_30min_R1 7 RPGTQGHLGPEKEEEESDGEPEDSSTS 27 2 Q8IYB7;H7C1Q8 Q8IYB7 DIS3L2 DIS3-like exonuclease 2 1 0 RPGTQGHLGPEKEEEES(0.999)DGEPEDSSTS;RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGTQGHLGPEKEEEES(1)DGEPEDSSTS;RPGT(0.001)QGHLGPEKEEEES(0.998)DGEPEDS(0.001)S(0.001)TS;RPGTQGHLGPEKEEEES(0.999)DGEPEDSSTS ;;;;;; 188.77 9.46E-21 7545870000 2936810 3140020 2102790 1938380 3775040 3882610 5162890 4886370 2827400 4791060 TRUE FALSE FALSE 2730954.785 2891193.379 2917046.603 4512646.6 3301539.282 3403613.054 3871080.315 3773850.22 3072481.309 3591347.391 0.760426238 0.805044198 0.812242951 1.256533025 0.919303794 0.947725932 1.0778908 1.05081737 0.855523282 1 21.77609378 -5.037814475 24.97671894 1.014919132 0.789212181 0.501837869 0.101979168 417.5035258 275763.5989 0.027057939 0.046880631 9.17E-06 5.037814475 -0.225706952 RPHGSTLSVSAS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 RPHGSTLSVSASPEK 15 1 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 1 0 RPHGS(0.001)T(0.001)LS(0.002)VS(0.176)AS(0.82)PEK 47.532 0.035087 102530000 78748 136930 142870 40479 129090 113110 110720 120350 110660 78707 TRUE FALSE FALSE 96265.22092 152942.7724 195723.5583 42690.26527 116237.3463 119032.2647 87063.7675 90833.9738 132868.447 59086.79339 1.629217214 2.588442587 3.312475548 0.722500965 1.967230571 2.014532484 1.473489464 1.537297399 2.248699571 1 15.85054809 -5.257432772 24.99932811 1.620158397 2.517884799 0.358123196 0.575838595 399.9134553 2495260.588 0.156201677 0.258395187 5.53E-06 5.257432772 0.897726402 RPHS(ph)PEKAFSSNPVVR ddPTM_HeLa_A485_30min_R1 2 RPHSPEKAFSSNPVVR 16 2 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 RPHS(1)PEKAFSSNPVVR;RPHS(1)PEKAFSSNPVVR ; 201.52 1.62E-25 718970000 144162 490000 245510 115291 616450 766620 1023780 2552200 300280 220870 TRUE FALSE FALSE 176230.3395 547301.2376 336334.3655 121589.0554 555074.0735 806759.0378 805041.0395 1926268.948 360543.4417 165811.1738 1.062837537 3.300750034 2.028417976 0.733298321 3.34762767 4.865528777 4.855167604 11.61724451 2.174421864 1 17.33918171 -6.21526903 2.229082859 5.703583673 1.913639528 0.199304814 2.734988027 0.412576231 4.026637607 1.019796838 0.969490748 6.09E-07 6.21526903 -3.789944145 RPHS(ph)PEKAFSSNPVVR ddPTM_HeLa_A486_30min_R1 1 RPHSPEKAFSSNPVVR 16 2 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 RPHS(0.993)PEKAFS(0.003)S(0.003)NPVVR 44.238 0.030338 127290000 66989 47272 54414 28018 142090 47056 76000 104820 38467 64801 TRUE FALSE FALSE 62293.41703 43525.99456 75484.55806 65227.31995 124267.7473 41250.70915 56983.99615 80954.7742 41801.35053 48574.40782 1.282432866 0.896068455 1.553998524 1.342833045 2.558296701 0.849227217 1.173127964 1.666613714 0.860563256 1 15.56790879 -7.77557176 24.99211436 0.930281224 1.411378251 0.153807545 0.455002827 525.8808458 929955.1634 0.435425939 0.114637308 1.68E-08 7.77557176 0.481097027 RPHT(ph)PTPGIYMGR ddPTM_HeLa_A485_30min_R1 11 RPHTPTPGIYMGR 13 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RPHT(0.995)PT(0.005)PGIYMGR;RPHT(0.999)PT(0.001)PGIYMGR;RPHT(0.958)PT(0.042)PGIYMGR;RPHT(0.997)PT(0.003)PGIYMGR;RPHT(0.995)PT(0.005)PGIYMGR;RPHT(0.992)PT(0.008)PGIYMGR;RPHT(0.997)PT(0.003)PGIYMGR;RPHT(0.853)PT(0.147)PGIYMGR;RPHT(0.831)PT(0.169)PGIYMGR;RPHT(0.935)PT(0.065)PGIYMGR;RPHT(0.869)PT(0.131)PGIYMGR ;;;;;;;;;; 170.48 3.76E-12 17003120000 1785603 1904360 2450085 2187409 2448566 1765378 1978102 1547038 2233654 2970020 TRUE FALSE FALSE 2182804.227 2127058.336 3356473.398 2306901.615 2204778.172 1857810.462 1555464.348 1167624.505 2681927.87 2229648.673 0.978990212 0.953988116 1.505382188 1.034648033 0.988845551 0.833230134 0.697627553 0.523680936 1.202847741 1 21.08838497 -5.98566834 2.251251655 0.812403873 1.13654815 0.238715605 0.220503369 0.395980833 4.044489466 0.07934396 0.087554778 1.03E-06 5.98566834 0.324144277 RPHT(ph)PTPGIYMGR ddPTM_HeLa_A486_30min_R1 11 RPHTPTPGIYMGR 13 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RPHT(0.987)PT(0.013)PGIYMGR;RPHT(0.991)PT(0.009)PGIYMGR;RPHT(0.994)PT(0.006)PGIYMGR;RPHT(0.994)PT(0.006)PGIYMGR;RPHT(0.896)PT(0.104)PGIYMGR;RPHT(0.886)PT(0.114)PGIYMGR;RPHT(0.979)PT(0.021)PGIYMGR;RPHT(0.852)PT(0.148)PGIYMGR;RPHT(0.962)PT(0.038)PGIYMGR;RPHT(0.997)PT(0.003)PGIYMGR;RPHT(0.927)PT(0.073)PGIYMGR ;;;;;;;;;; 198.51 1.86E-21 33466990000 2291781 2495978 2113157 581306 2189479 2220619 2054063 2113838 2394458 2294983 TRUE FALSE FALSE 2131138.987 2298187.613 2931427.983 1353309.746 1914854.128 1946661.605 1540114.712 1632563.232 2602011.547 1720304.319 1.238815111 1.335919225 1.704017103 0.786668807 1.113090345 1.131579793 0.895257133 0.948996764 1.5125298 1 20.71423237 -5.263464398 24.99786371 1.052220504 1.417217346 0.390004315 0.212394908 185.6961322 2292339.79 0.058558667 0.092015196 5.45E-06 5.263464398 0.364996842 RPHT(ph)PTPGIYMGRPT(ph)YGSSR ddPTM_HeLa_A486_30min_R1 1 RPHTPTPGIYMGRPTYGSSR 20 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 2 0 RPHT(1)PTPGIY(0.005)MGRPT(0.822)Y(0.009)GS(0.127)S(0.037)R 73.865 0.006529 1243200000 748550 639660 325540 303480 570560 787440 922750 799400 521560 1173900 TRUE FALSE FALSE 696080.5105 588971.012 451597.8063 706516.777 498995.0445 690293.6589 691868.1901 617394.0708 566769.2407 879947.7992 0.791047504 0.669324945 0.513209768 0.802907602 0.567073462 0.784471147 0.786260493 0.701625791 0.644094162 1 19.74705842 -6.302881472 24.98180788 0.764827589 0.667562825 0.179485113 0.119253973 1020.175307 614971.4559 0.040616042 0.035820238 4.98E-07 6.302881472 -0.097264764 RPHT(ph)PTPGIYMGRPTYGS(ph)SR ddPTM_HeLa_A485_30min_R1 2 RPHTPTPGIYMGRPTYGSSR 20 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 2 0 RPHT(1)PT(0.001)PGIYMGRPT(0.288)Y(0.001)GS(0.701)S(0.01)R;RPHT(0.998)PT(0.002)PGIYMGRPT(0.363)Y(0.002)GS(0.508)S(0.127)R ; 80.664 0.0025123 1986480000 448555 415093 356988 429334 480346 557921 754318 762797 447993 608329 TRUE FALSE FALSE 548334.5123 463634.5155 489052.7167 452787.4293 432521.0656 587132.8809 593151.7971 575719.8397 537901.0859 456683.7758 1.200687525 1.015220028 1.070878237 0.991468174 0.947090938 1.285644273 1.298823888 1.260653148 1.177841461 1 18.80083601 -6.268275165 24.99016943 1.226772837 1.041866729 0.374824437 0.100957177 505.9717929 1849717.676 0.034438231 0.031042533 5.39E-07 6.268275165 -0.184906108 RPHT(ph)PTPGIYMGRPTYGS(ph)SR ddPTM_HeLa_A486_30min_R1 1 RPHTPTPGIYMGRPTYGSSR 20 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 2 0 RPHT(0.999)PT(0.001)PGIY(0.002)MGRPT(0.093)Y(0.002)GS(0.894)S(0.009)R 92.198 0.00061215 553820000 40563 42610 31191 20293 41075 38309 42157 44298 36737 40422 TRUE FALSE FALSE 37719.74317 39233.42842 43268.99052 47243.12955 35922.99049 33582.82508 31608.87271 34212.31242 39921.39274 30300.0681 1.244873214 1.294829711 1.42801628 1.559175689 1.185574579 1.108341571 1.043194775 1.129116684 1.317534753 1 14.88703342 -5.944625448 9.134959192 1.125546733 1.378677159 0.563858856 0.109395087 0.26105087 40.2793424 0.035584227 0.040353899 1.14E-06 5.944625448 0.253130426 RPHT(ph)PTPGIYMGRPTYGSSR ddPTM_HeLa_A485_30min_R1 7 RPHTPTPGIYMGRPTYGSSR 20 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RPHT(1)PTPGIYMGRPTYGSSR;RPHT(0.969)PT(0.031)PGIYMGRPTYGSSR;RPHT(0.994)PT(0.006)PGIYMGRPTYGSSR;RPHT(0.971)PT(0.029)PGIYMGRPTYGSSR;RPHT(0.99)PT(0.01)PGIYMGRPTYGSSR;RPHT(0.994)PT(0.006)PGIYMGRPTYGSSR;RPHT(0.992)PT(0.008)PGIYMGRPTYGSSR ;;;;;; 211.49 7.86E-27 45233770000 249194.9 316976.8 360543.5 266771.3 445916 381158.1 464124.9 449496 301903 311083.6 TRUE FALSE FALSE 304627.4458 354044.4794 493923.5441 281344.3406 401519.0373 401114.9487 364960.8236 339256.4012 362492.1629 233536.1836 1.304412195 1.516015523 2.114976517 1.204714132 1.719301186 1.717570882 1.562759218 1.452693095 1.552188433 1 17.83328657 -8.923370873 0.730802879 0.982509902 1.600199678 0.34661181 0.236514577 4.812465417 2.933353255 0.467523343 0.083464732 1.19E-09 8.923370873 0.617689776 RPHT(ph)PTPGIYMGRPTYGSSR ddPTM_HeLa_A486_30min_R1 6 RPHTPTPGIYMGRPTYGSSR 20 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RPHT(0.91)PT(0.09)PGIYMGRPTYGSSR;RPHT(0.983)PT(0.017)PGIYMGRPTYGSSR;RPHT(0.997)PT(0.003)PGIYMGRPTYGSSR;RPHT(0.994)PT(0.006)PGIYMGRPTYGSSR;RPHT(0.998)PT(0.002)PGIYMGRPTYGSSR;RPHT(0.998)PT(0.002)PGIYMGRPTYGSSR ;;;;; 149.73 1.44E-09 11049350000 328614 366048 280504 128820.5 446631 326987 414171.8 391474 285285 394893 TRUE FALSE FALSE 305579.8556 337041.0234 389122.661 299900.6342 390610.3753 286646.6685 310541.635 302343.916 310013.7335 296009.2225 1.032332213 1.13861663 1.314562626 1.013146252 1.319588532 0.968370736 1.049094459 1.021400325 1.047311063 1 18.1752826 -6.29460706 24.98966007 1.020564027 1.162281422 0.367060874 0.096073071 721.0730268 543278.5831 0.032402738 0.028578282 5.07E-07 6.29460706 0.141717395 RPHTPT(ph)PGIYMGR ddPTM_HeLa_A485_30min_R1 1 RPHTPTPGIYMGR 13 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RPHT(0.332)PT(0.668)PGIYMGR 95.508 0.0009948 133950000 49957 51859 65244 64108 62401 48202 54658 46571 65497 86744 TRUE FALSE FALSE 61069.7623 57923.45894 89380.47063 67610.05771 56188.13734 50725.78219 42979.87179 35149.38923 78641.64713 65120.31721 0.937798907 0.889483673 1.372543539 1.03823293 0.862835744 0.778954777 0.660007101 0.539760719 1.207636119 1 15.99082011 -5.810232066 3.687855879 0.800343555 1.072439602 0.197927352 0.208833788 0.322170448 9.003222927 0.067007204 0.080026269 1.55E-06 5.810232066 0.272096047 RPHTPT(ph)PGIYMGR ddPTM_HeLa_A486_30min_R1 1 RPHTPTPGIYMGR 13 1 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 1 0 RPHT(0.287)PT(0.713)PGIYMGR 100.55 0.00026429 277650000 129520 139090 131020 29662 125810 126550 122390 118480 105450 132210 TRUE FALSE FALSE 120441.3168 128068.0018 181754.4528 69054.63503 110029.7367 110937.5477 91766.72749 91504.6904 114590.4909 99103.75546 1.215305276 1.292261845 1.833981487 0.696791304 1.110247903 1.119408111 0.925966196 0.923322128 1.156267897 1 16.59665211 -5.269896076 24.99997655 0.9947898 1.431690776 0.534063072 0.195374295 485.1778196 1434298.461 0.054469217 0.082262083 5.37E-06 5.269896076 0.436900977 RPILQLS(ph)PPGPR ddPTM_HeLa_A485_30min_R1 6 RPILQLSPPGPR 12 1 Q8N3X1-2;Q8N3X1;F5GXL1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR ;;;;; 115.11 0.00016425 15208689000 1113204 1671269 1536072 1062322 1703121 1467762 1676774 1877451 1344111 1403955 TRUE FALSE FALSE 1360832.389 1866709.371 2104328.954 1120353.961 1533552.293 1544611.749 1318517.537 1417003.199 1613861.749 1053974.856 1.291143125 1.771113761 1.996564663 1.06297978 1.45501791 1.465511003 1.250995248 1.344437384 1.531214658 1 20.00740902 -11.53132035 0.08471295 6.05E-11 1.969954551 0.259258905 0.247359072 173.8914046 1.78631573 42.79120277 8.986951644 2.94E-12 11.53132035 1.969954551 RPILQLS(ph)PPGPR ddPTM_HeLa_A486_30min_R1 7 RPILQLSPPGPR 12 1 Q8N3X1-2;Q8N3X1;F5GXL1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR;RPILQLS(1)PPGPR ;;;;;; 128.63 1.98E-05 14610350000 1299310 1271576 1135304 426500 1469046 1133301 1257893 1319644 1068585 1255586 TRUE FALSE FALSE 1208235.079 1170811.687 1574924.113 992913.5541 1284784.552 993485.8452 943154.8668 1019189.869 1161210.808 941179.0931 1.283746194 1.243983951 1.673352208 1.054967712 1.365079783 1.055575769 1.002099254 1.082886218 1.233783046 1 19.84410975 -5.975793897 1.43440096 1.076965214 1.357716287 0.363230724 0.158830543 0.448916001 1.902768408 0.064035962 0.073263445 1.06E-06 5.975793897 0.280751073 RPIMSNHTATHILNFALR ddPTM_HeLa_A486_30min_R1 1 RPIMSNHTATHILNFALR 18 1 P49588-2;P49588;H3BPK7 P49588-2 AARS "Alanine--tRNA ligase, cytoplasmic" 0 0 98.507 0.00032587 3918200 13334 2903.5 3207.8 1565.3 4505.9 3144.4 4107.3 3160.2 3327.7 5616 FALSE FALSE TRUE 12399.35546 2673.416086 4449.946068 3644.097506 3940.728006 2756.475898 3079.610097 2440.691447 3616.147715 4209.717046 2.945413034 0.63505838 1.057065361 0.865639535 0.936102822 0.654788877 0.731548003 0.579775652 0.859000184 1 12.03950755 -4.258662956 24.99989341 0.805682997 2.945413802 0.946157424 0.152581497 53.4348411 481120.3795 0.038449278 0.258739183 5.51E-05 4.258662956 2.139730805 RPIS(ph)DDDCPSASK ddPTM_HeLa_A485_30min_R1 1 RPISDDDCPSASK 13 1 Q96PU4 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 1 0 RPIS(1)DDDCPSASK 77.031 0.0041175 1029300000 731210 722400 612560 856800 1259600 984670 1331900 1414700 911160 1188300 TRUE FALSE FALSE 893865.1419 806878.396 839171.4347 903604.8145 1134189.801 1036225.799 1047328.684 1067742.607 1094021.454 892078.679 1.002002584 0.904492412 0.940692177 1.012920537 1.271401086 1.161585657 1.174031741 1.196915286 1.226373279 1 19.76681143 -5.601706245 5.316523631 1.18047295 0.949206041 0.682315667 0.069854866 0.104597075 5.134954245 0.019633532 0.025610823 2.50E-06 5.601706245 -0.231266909 RPIS(ph)DDDCPSASK ddPTM_HeLa_A486_30min_R1 1 RPISDDDCPSASK 13 1 Q96PU4 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 1 0 RPIS(1)DDDCPSASK 126.07 1.71E-05 1029900000 623590 748620 527920 260390 746940 731800 845240 990400 622580 724490 TRUE FALSE FALSE 579879.5612 689296.6248 732344.7622 606201.0794 653251.8203 641517.9564 633752.012 764907.5403 676545.7357 543072.9884 1.067774634 1.269252273 1.348519956 1.11624237 1.202880339 1.181273917 1.166973916 1.40848018 1.245773128 1 19.05078658 RPISDDDCPS(ph)ASK ddPTM_HeLa_A486_30min_R1 1 RPISDDDCPSASK 13 1 Q96PU4 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 1 0 RPIS(0.111)DDDCPS(0.868)AS(0.021)K 201.72 4.67E-21 333450000 322520 399910 282850 166420 407060 402580 500270 465650 303890 420720 TRUE FALSE FALSE 299913.0135 368219.6752 392377.095 387434.1704 356002.7391 352913.7727 375097.1547 359631.6601 330231.4299 315368.9736 0.950990867 1.167583707 1.244184203 1.228510738 1.128845159 1.11905039 1.189391431 1.140352064 1.047127199 1 18.26668121 -7.849951782 2.95055552 1.001903238 1.153805324 0.298553971 0.076310244 0.297691221 4.937304708 0.074273953 0.020295518 1.41E-08 7.849951782 0.151902086 RPLAPS(ph)GRSPVEGLGR ddPTM_HeLa_A485_30min_R1 1 RPLAPSGRSPVEGLGR 16 2 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 0 RPLAPS(0.983)GRS(0.017)PVEGLGR 99.413 0.00038685 456860000 105160 136990 146750 117890 209630 130380 154940 177990 142490 161650 TRUE FALSE FALSE 128552.4792 153009.7888 201038.9318 124330.0322 188758.5011 137206.4952 121835.8033 134337.6734 171086.436 121353.6299 1.059321252 1.260858772 1.656637151 1.024526685 1.555441739 1.13063363 1.003973291 1.106993449 1.40981721 1 16.88885774 -6.443159193 24.99997858 1.128842411 1.314923109 0.157279594 0.209480292 200.2756303 62804.75778 0.072245709 0.063714703 3.60E-07 6.443159193 0.186080698 RPLAPS(ph)GRSPVEGLGR ddPTM_HeLa_A486_30min_R1 1 RPLAPSGRSPVEGLGR 16 2 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 0 RPLAPS(0.694)GRS(0.306)PVEGLGR 109.22 0.0001486 656500000 120960 161940 183800 68235 235950 159560 194270 200630 154240 152820 TRUE FALSE FALSE 112481.3286 149107.2846 254972.2823 158854.5284 206354.9509 139875.1095 145661.5912 154950.9287 167609.6474 114552.8773 0.981916223 1.301645913 2.22580426 1.386735385 1.801394742 1.221052782 1.271566412 1.352658548 1.463164011 1 16.80565417 -6.29043709 24.32640399 1.284346856 1.555926468 0.152142638 0.324565506 1092.854974 916800.3209 0.11734594 0.103510092 5.12E-07 6.29043709 0.271579612 RPLAPSGRS(ph)PVEGLGR ddPTM_HeLa_A485_30min_R1 3 RPLAPSGRSPVEGLGR 16 2 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 0 RPLAPS(0.002)GRS(0.998)PVEGLGR;RPLAPS(0.004)GRS(0.996)PVEGLGR;RPLAPS(0.003)GRS(0.997)PVEGLGR ;; 144.95 3.54E-08 1032070000 182396 259065 294323 225024 408844 259833 329692 301093 309547 340092 TRUE FALSE FALSE 222969.3609 289360.3982 403205.3255 237316.4913 368138.0558 273437.4541 259250.6109 227249.4697 371670.2436 255313.3233 0.87331659 1.133354086 1.579256892 0.9295108 1.441906952 1.070987799 1.015421395 0.890080732 1.45574167 1 17.9619093 RPLAPSGRS(ph)PVEGLGR ddPTM_HeLa_A486_30min_R1 3 RPLAPSGRSPVEGLGR 16 2 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 0 RPLAPS(0.434)GRS(0.566)PVEGLGR;RPLAPS(0.001)GRS(0.999)PVEGLGR;RPLAPSGRS(1)PVEGLGR ;; 168.46 2.01E-12 1177580000 446946 571524 585670 222474 810200 563110 679420 713580 461122 522943 TRUE FALSE FALSE 415617.3934 526234.3568 812457.1088 517930.7152 708577.1612 493639.2135 509421.9298 551113.4113 501092.4262 391994.669 1.060262872 1.34245284 2.072622852 1.321269793 1.807619382 1.259300834 1.299563413 1.405920679 1.27831439 1 18.58047451 -6.375624953 21.56642476 1.277155712 1.530882214 0.19101966 0.276625371 14.87500648 2776.380544 0.098128731 0.086541321 4.21E-07 6.375624953 0.253726501 RPLDS(ph)PEAEELPAMK ddPTM_HeLa_A485_30min_R1 5 RPLDSPEAEELPAMK 15 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK ;;;; 231.76 1.40E-34 2997260000 2737630 3103300 2719250 3271530 3883740 3631790 4661500 4927890 3248960 4543900 TRUE FALSE FALSE 3346606.349 3466203.94 3725213.732 3450245.4 3497061.209 3821944.909 3665532.444 3719317.251 3900996.471 3411189.354 0.981067306 1.016127684 1.092057152 1.011449392 1.025173582 1.120414176 1.074561411 1.090328582 1.143588369 1 21.70184341 -6.244682795 23.94669078 1.090722974 1.027625523 0.323447738 0.043459533 552.3522993 789361.6565 0.014007302 0.013965891 5.69E-07 6.244682795 -0.063097451 RPLDS(ph)PEAEELPAMK ddPTM_HeLa_A486_30min_R1 5 RPLDSPEAEELPAMK 15 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK ;;;; 218.38 9.97E-34 3077110000 3555420 3559910 2536380 1393830 4026410 3434770 4034410 4003100 2729740 3957620 TRUE FALSE FALSE 3306203.418 3277809.767 3518534.263 3244906.68 3521380.113 3011023 3024957.946 3091681.517 2966356.061 2966606.192 1.114473309 1.10490222 1.186046962 1.093811066 1.187006257 1.014972263 1.019669532 1.042161081 0.999915684 1 21.500382 -6.276546494 24.93136632 1.018249133 1.135748871 0.794869642 0.030941635 344.8633054 569128.2956 0.010358218 0.009170812 5.29E-07 6.276546494 0.117499737 RPLEDGDGSWTS(ph)PSSTTHWEGMPSPFK ddPTM_HeLa_A485_30min_R1 1 RPLEDGDGSWTSPSSTTHWEGMPSPFK 27 1 C9JSZ1 C9JSZ1 FUBP1 1 0 RPLEDGDGS(0.075)WT(0.364)S(0.546)PS(0.004)S(0.004)T(0.004)T(0.004)HWEGMPSPFK 131.23 4.71E-06 99718000 68620 105720 104110 43430 100560 80675 91036 99901 87670 84426 TRUE FALSE FALSE 83884.28226 118083.0344 142624.6214 45802.47093 90547.89331 84899.01825 71585.4149 75400.12311 105264.5648 63380.15195 1.323510274 1.863091689 2.250304188 0.722662687 1.428647463 1.339520586 1.129461081 1.189648822 1.660844312 1 15.9517435 -5.257071301 24.99935495 1.229151371 1.817380985 0.433364555 0.315007804 361.3434375 2068031.442 0.085316784 0.141412338 5.53E-06 5.257071301 0.588229615 RPLEDGDGSWTS(ph)PSSTTHWEGMPSPFK ddPTM_HeLa_A486_30min_R1 1 RPLEDGDGSWTSPSSTTHWEGMPSPFK 27 1 C9JSZ1 C9JSZ1 FUBP1 1 0 RPLEDGDGS(0.009)WT(0.408)S(0.569)PS(0.003)S(0.003)T(0.003)T(0.003)HWEGMPSPFK 148.02 3.91E-09 55126000 80749 90766 83516 9110.4 101540 67896 80656 84991 80456 51285 TRUE FALSE FALSE 75088.91209 83573.3716 115855.6318 21209.47161 88803.90638 59519.68184 60475.01571 65640.40464 87429.99086 38442.90219 1.953258152 2.173961039 3.013706698 0.551713591 2.31002087 1.548261927 1.573112649 1.707477867 2.27428175 1 15.23042963 -5.238753973 24.99994468 1.626394789 2.359673713 0.307213378 0.554738997 1065.113604 1173783.196 0.144111995 0.24938215 5.77E-06 5.238753973 0.733278924 RPLEDGDGSWTSPSSTTHWEGMPS(ph)PFKDQPDAK ddPTM_HeLa_A486_30min_R1 1 RPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAK 33 2 C9JSZ1 C9JSZ1 FUBP1 1 0 RPLEDGDGSWTSPSSTTHWEGMPS(1)PFKDQPDAK 142.27 9.59E-10 308840000 120490 111700 63274 8300.1 110920 112580 143940 130460 99833 111870 TRUE FALSE FALSE 112044.2732 102848.4852 87775.38734 19323.05226 97007.37931 98691.02423 107924.6896 100757.1059 108486.6048 83857.02385 1.336134626 1.226474307 1.046726718 0.230428548 1.156818772 1.176896337 1.287008346 1.201534485 1.293709219 1 16.35564401 -5.974779607 24.99717887 1.205539635 0.948733995 0.13106697 0.284653872 466.1101275 461982.5765 0.094405355 0.107041837 1.06E-06 5.974779607 -0.256805639 RPLEEDFRRS(ph)PTEDFR ddPTM_HeLa_A485_30min_R1 6 RPLEEDFRRSPTEDFR 16 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RPLEEDFRRS(0.996)PT(0.004)EDFR;RPLEEDFRRS(0.985)PT(0.015)EDFR;RPLEEDFRRS(1)PTEDFR;RPLEEDFRRS(0.997)PT(0.003)EDFR;RPLEEDFRRS(0.971)PT(0.029)EDFR;RPLEEDFRRS(0.998)PT(0.002)EDFR ;;;;; 183.71 5.86E-17 26244100000 6613630 12309040 13283110 7571580 16440500 14038410 16329000 21734100 11902780 11007880 TRUE FALSE FALSE 8084809.177 13748475.15 18197085.15 7985196.243 14803626.09 14773439.44 12840175.75 16403777.9 14291558.77 8263818.101 0.97833823 1.663695278 2.202019082 0.966284125 1.791378502 1.787725632 1.553782476 1.985011976 1.729413522 1 22.97837707 -4.26163177 10.61425818 1.666452117 0.977190828 0.213643903 0.370092017 0.095407324 500.218556 0.087110057 0.485746284 5.47E-05 4.26163177 -0.689261289 RPLEEDFRRS(ph)PTEDFR ddPTM_HeLa_A486_30min_R1 4 RPLEEDFRRSPTEDFR 16 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RPLEEDFRRS(0.995)PT(0.005)EDFR;RPLEEDFRRS(0.985)PT(0.015)EDFR;RPLEEDFRRS(0.976)PT(0.024)EDFR;RPLEEDFRRS(0.992)PT(0.008)EDFR ;;; 166.28 3.17E-11 19104800000 7566890 8018590 9670040 3563210 14412300 9399390 11305700 12103200 7801720 9505860 TRUE FALSE FALSE 7036490.086 7383167.725 13414538.46 8295332.955 12604574.94 8239788.828 8476894.281 9347565.571 8477979.371 7125530.783 0.987503991 1.036156877 1.882601994 1.164170531 1.768931372 1.156375445 1.189650924 1.311841301 1.189803206 1 22.76456605 RPLFLAPDFDRWLDES(ph)DAEMELR ddPTM_HeLa_A485_30min_R1 8 RPLFLAPDFDRWLDESDAEMELR 23 2 H3BPZ1;H3BS72;Q9P035 H3BPZ1 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 0 RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR ;;;;;;; 314.57 2.58E-105 610407800 152981.2 171977.9 144707.4 152959.2 199313.8 242618.6 302025.9 511522 154812.1 427760 TRUE FALSE FALSE 187011.3402 192089.2194 198240.689 161314.9738 179469.4182 255321.7347 237495.5991 386070.4275 185881.4684 321127.3043 0.582358889 0.598171556 0.617327416 0.502339638 0.558873119 0.795079494 0.739568377 1.202234822 0.578840435 1 18.29278581 -6.55863218 1.816914602 0.910819395 0.571451766 0.480352074 0.153681411 0.288415882 1.927178694 0.068289891 0.05018807 2.76E-07 6.55863218 -0.339367629 RPLFLAPDFDRWLDES(ph)DAEMELR ddPTM_HeLa_A486_30min_R1 4 RPLFLAPDFDRWLDESDAEMELR 23 2 H3BPZ1;H3BS72;Q9P035 H3BPZ1 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 0 RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR ;;; 263.1 1.11E-61 214745000 61402.4 86792.6 135335.5 49458.2 229572 106685.6 144172 130982 118360 119811 TRUE FALSE FALSE 57098.40884 79914.83828 187741.03 115141.1891 200776.9391 93523.81537 108098.6407 101160.2579 128619.5401 89809.54576 0.635772159 0.889825659 2.090435136 1.282059586 2.235585732 1.041357181 1.203643107 1.126386478 1.432136629 1 16.45458118 RPLILQLIFSK ddPTM_HeLa_A485_30min_R1 1 RPLILQLIFSK 11 1 P50570-3;P50570-2;P50570-5;P50570-4;P50570 P50570-3 DNM2 Dynamin-2 0 0 134.13 0.00015183 0 26771 31742 24969 29658 35539 20442 37597 29765 16173 36601 FALSE FALSE TRUE 32726.11659 35453.95078 34206.07215 31278.14144 32000.61238 21512.31151 29564.09381 22465.08708 19418.77275 27477.04429 1.191034823 1.290311665 1.24489635 1.138337192 1.164630811 0.782919417 1.075956114 0.817594747 0.706727134 1 14.7459392 -6.157238065 4.737129511 0.87827586 1.215457166 0.711491176 0.10500253 0.130090068 4.680711326 0.035982291 0.035994496 6.96E-07 6.157238065 0.337181307 RPLLPFETEVGPCGVGEASLDKADSEGSNS(ph)GGTWPK ddPTM_HeLa_A485_30min_R1 1 RPLLPFETEVGPCGVGEASLDKADSEGSNSGGTWPK 36 2 Q8TDM6-4;Q8TDM6;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 RPLLPFETEVGPCGVGEAS(0.003)LDKADS(0.097)EGS(0.097)NS(0.424)GGT(0.379)WPK 67.087 0.00065296 40522000 19124 15798 14290 23257 29503 21431 30884 27542 16700 38860 TRUE FALSE FALSE 23378.06782 17645.43868 19576.46566 24527.47102 26565.57773 22553.09402 24285.3811 20787.28132 20051.53682 29172.91717 0.80136202 0.604856846 0.6710493 0.840761686 0.910624658 0.773083264 0.832463239 0.712554086 0.687333965 1 14.83234204 -11.54033587 2.281472303 5.098587301 0.760225304 0.407239733 0.087097283 3003780.822 371192.3007 64536765.15 0.025422766 2.88E-12 11.54033587 -4.338361997 RPLPVES(ph)PDTQR ddPTM_HeLa_A485_30min_R1 4 RPLPVESPDTQR 12 1 P57682 P57682 KLF3 Krueppel-like factor 3 1 0 RPLPVES(0.995)PDT(0.005)QR;RPLPVES(0.998)PDT(0.002)QR;RPLPVES(1)PDTQR;RPLPVES(0.994)PDT(0.006)QR ;;; 158.65 1.01E-08 1332580000 565270 700940 825990 705920 882430 663460 757030 674710 726720 942280 TRUE FALSE FALSE 691012.3613 782908.8356 1131558.073 744482.6221 794572.1708 698197.7397 595284.3561 509236.3146 872566.0381 707386.9374 0.976852024 1.106761794 1.599630999 1.052440444 1.123249708 0.987009659 0.841525797 0.719883684 1.233506009 1 19.43214005 -6.087153988 1.862531297 0.926807483 1.210006774 0.232397354 0.197203969 0.470649297 3.252473094 0.077865924 0.080552993 8.18E-07 6.087153988 0.283199291 RPLPVES(ph)PDTQR ddPTM_HeLa_A486_30min_R1 2 RPLPVESPDTQR 12 1 P57682 P57682 KLF3 Krueppel-like factor 3 1 0 RPLPVES(1)PDTQR;RPLPVES(0.967)PDT(0.033)QR ; 137.79 3.15E-05 504040000 429410 492010 449100 135674 544580 421830 435690 478680 445860 479220 TRUE FALSE FALSE 399310.5765 453021.3357 623003.5473 315855.9286 476273.6984 369788.9035 326675.7537 369695.0135 484507.5038 359220.1928 1.111603926 1.26112436 1.734322178 0.87928222 1.32585447 1.02942126 0.909402534 1.029159888 1.348775802 1 18.45450892 -5.287409797 24.99958888 1.077480296 1.358227778 0.299375995 0.206196721 953.9117865 918250.371 0.058138918 0.086267958 5.16E-06 5.287409797 0.280747483 RPLS(ph)ASLGQLNEVGLPSAAILPDEGAVDLPSR ddPTM_HeLa_A485_30min_R1 2 RPLSASLGQLNEVGLPSAAILPDEGAVDLPSR 32 1 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 0 RPLS(0.5)AS(0.5)LGQLNEVGLPSAAILPDEGAVDLPSR;RPLS(0.557)AS(0.443)LGQLNEVGLPSAAILPDEGAVDLPSR ; 99.725 9.78E-05 145539000 13655 14063 24557 12975 17915 14280 20149 22284 16053 27577 TRUE FALSE FALSE 16692.50764 15707.54552 33641.6562 13683.7914 16131.3197 15027.67872 15844.00155 16818.81406 19274.68985 20702.56142 0.806301564 0.75872474 1.624999705 0.660970936 0.779194389 0.725884996 0.765316003 0.812402568 0.931029232 1 14.33752166 RPLS(ph)ASLGQLNEVGLPSAAILPDEGAVDLPSR ddPTM_HeLa_A486_30min_R1 2 RPLSASLGQLNEVGLPSAAILPDEGAVDLPSR 32 1 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 0 RPLS(0.57)AS(0.43)LGQLNEVGLPSAAILPDEGAVDLPSR;RPLS(0.5)AS(0.5)LGQLNEVGLPSAAILPDEGAVDLPSR ; 98.832 0.00010216 98365000 29814 33831.5 37299 13299.8 41905 33744 32213 40126 31514 37169 TRUE FALSE FALSE 27724.19256 31150.56873 51742.1717 30962.60653 36648.88415 29581.00836 24152.96669 30990.18574 34245.65889 27861.64047 0.995066769 1.118045033 1.857111456 1.111298761 1.315388596 1.061710935 0.866889612 1.112288624 1.229132898 1 14.76599258 -6.269225096 15.94082676 1.049324482 1.293177727 0.188167299 0.233088074 7.67342971 15706.00955 0.083541387 0.075964778 5.38E-07 6.269225096 0.243853245 RPLS(ph)GPDVGTPQPAGLASGAK ddPTM_HeLa_A485_30min_R1 1 RPLSGPDVGTPQPAGLASGAK 21 1 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RPLS(1)GPDVGTPQPAGLASGAK 178.53 2.94E-19 270980000 147910 136370 123270 231500 223080 112430 195830 172110 163550 306060 TRUE FALSE FALSE 180812.0692 152317.2852 168872.7027 244146.2588 200869.3719 118316.661 153989.3207 129899.7526 196372.9848 229764.8746 0.786943912 0.662926766 0.734980501 1.062591744 0.874238816 0.514946687 0.670203925 0.565359491 0.854669301 1 17.80979874 -6.2007329 24.9995181 0.690691842 0.823641377 0.077080183 0.162563405 516.4440841 212676.1718 0.054402676 0.054402666 6.30E-07 6.2007329 0.132949535 RPLS(ph)PETR ddPTM_HeLa_A485_30min_R1 2 RPLSPETR 8 1 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RPLS(1)PETR;RPLS(0.872)PET(0.128)R ; 107.09 0.0011636 482050000 119723 155376 171736 143630 182402 133896 146552 157463 151713 199343 TRUE FALSE FALSE 146354.9683 173545.8716 235268.2929 151476.1432 164241.4164 140906.5875 115239.968 118844.9524 182160.4075 149650.4587 0.977978748 1.159674839 1.572118755 1.012199658 1.097500254 0.94157137 0.770060907 0.794150271 1.217239219 1 17.19123718 -5.843094878 1.922072648 0.926167641 1.222034822 0.266227016 0.187551402 0.416481909 3.163708767 0.068225109 0.083941952 1.44E-06 5.843094878 0.295867181 RPLS(ph)PETR ddPTM_HeLa_A486_30min_R1 2 RPLSPETR 8 1 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RPLS(0.992)PET(0.008)R;RPLS(0.984)PET(0.016)R ; 134.3 0.00029315 926250000 153757 195524 186138 55989 247230 177869 177115 194707 184677 165040 TRUE FALSE FALSE 142979.4283 180029.9662 258215.6185 130345.2215 216220.1081 155925.3312 132798.9537 150376.4665 200684.9511 123712.9098 1.155735716 1.455223764 2.087216435 1.053610507 1.747757033 1.260380437 1.07344459 1.215527683 1.622182773 1 16.91663653 -6.473391493 19.71291959 1.23448727 1.50514273 0.155907151 0.309469919 69.53656735 27698.67795 0.107398397 0.094705929 3.36E-07 6.473391493 0.27065546 RPLS(ph)SSHEASEGQAK ddPTM_HeLa_A485_30min_R1 5 RPLSSSHEASEGQAK 15 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 RPLS(0.608)S(0.133)S(0.254)HEAS(0.005)EGQAK;RPLS(0.813)S(0.093)S(0.093)HEASEGQAK;RPLS(0.671)S(0.258)S(0.071)HEASEGQAK;RPLS(0.668)S(0.166)S(0.166)HEASEGQAK;RPLS(0.333)S(0.333)S(0.333)HEASEGQAK ;;;; 213.01 2.61E-26 4510017000 2974385 2917168 2794856 2608284 4020233 2803326 3780925 3145923 3429791 4972111 TRUE FALSE FALSE 3636026.682 3258305.422 3828789.538 2750767.95 3619964.487 2950103.815 2973099.486 2374380.452 4118118.594 3732655.233 0.97411265 0.872918933 1.025754938 0.736946699 0.969809495 0.790349933 0.796510607 0.636110303 1.103267872 1 21.83177083 -5.250291917 24.79902033 0.845490208 0.949127838 0.087408828 0.133844215 1492.673566 3320645.261 0.034725483 0.059408482 5.62E-06 5.250291917 0.103637629 RPLS(ph)SSHEASEGQAK ddPTM_HeLa_A486_30min_R1 5 RPLSSSHEASEGQAK 15 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 RPLS(0.552)S(0.168)S(0.278)HEAS(0.001)EGQAK;RPLS(0.563)S(0.135)S(0.302)HEASEGQAK;RPLS(0.594)S(0.203)S(0.203)HEASEGQAK;RPLS(0.968)S(0.016)S(0.016)HEASEGQAK;RPLS(0.329)S(0.329)S(0.329)HEAS(0.014)EGQAK ;;;; 219.06 9.54E-34 2272400000 1997217 2216144 1679978 213754 2372925 2099953 2208576 2161971 1980276 1500980 TRUE FALSE FALSE 1857222.402 2040528.678 2330510.473 497630.1145 2075290.62 1840882.15 1655966.925 1669737.399 2151927.918 1125124.838 1.650681186 1.813602019 2.071335014 0.4422888 1.844498094 1.636158128 1.471807277 1.48404634 1.912612579 1 20.10165365 -10.95863236 2.59837043 0.546689335 1.580730118 0.148615905 0.424248513 43377474.28 26481275.01 118796536.4 0.107816995 1.10E-11 10.95863236 1.034040782 RPLSIQDSFVEVS(ph)PVCPRPR ddPTM_HeLa_A485_30min_R1 1 RPLSIQDSFVEVSPVCPRPR 20 2 Q9NPR2 Q9NPR2 SEMA4B Semaphorin-4B 1 0 RPLSIQDSFVEVS(1)PVCPRPR 57.147 0.011002 188890000 106030 115310 97363 125430 134220 138180 168400 182690 118050 174600 TRUE FALSE FALSE 129616.0077 128794.5014 133381.6253 132281.9233 120856.5855 145414.8911 132419.9643 137884.9911 141741.5522 131075.4333 0.988865758 0.982598327 1.017594388 1.009204547 0.922038421 1.109398516 1.010257689 1.051951442 1.081373898 1 17.00003779 -6.265317835 24.9999899 1.051322107 0.987238978 0.435520525 0.037783405 339.5824009 2188891.174 0.012654606 0.011591424 5.43E-07 6.265317835 -0.064083129 RPLSS(ph)SHEASEGQAK ddPTM_HeLa_A485_30min_R1 1 RPLSSSHEASEGQAK 15 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 RPLS(0.18)S(0.34)S(0.34)HEAS(0.141)EGQAK 175.59 6.92E-13 764020000 418550 407030 396090 376610 577550 351040 486920 413440 465920 622010 TRUE FALSE FALSE 511655.0035 454628.6178 542620.1737 397183.2507 520047.0941 369419.9116 382885.5642 312043.1918 559425.8703 466954.3542 1.095728092 0.97360398 1.162041148 0.850582604 1.113700064 0.791126388 0.81996358 0.668252023 1.198031168 1 18.832922 -6.262075241 24.99995776 0.870020943 1.031844189 0.16814319 0.154242191 92.75699771 3646841.766 0.050593383 0.047292052 5.47E-07 6.262075241 0.161823246 RPLT(ph)PFHHR ddPTM_HeLa_A485_30min_R1 4 RPLTPFHHR 9 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 RPLT(1)PFHHR;RPLT(1)PFHHR;RPLT(1)PFHHR;RPLT(1)PFHHR ;;; 107.03 0.00091763 1053180000 200218 282586 294392 188309 322329 246325 295231 316775 250456 264662 TRUE FALSE FALSE 244755.8034 315631.9745 403299.8515 198595.8438 290236.793 259222.1961 232152.485 239085.4346 300720.2219 198686.6341 1.231868487 1.588591884 2.029828797 0.999543048 1.460776636 1.304678582 1.168435341 1.20332923 1.51354027 1 17.6001353 -5.278244844 24.98498021 1.253672061 1.613946007 0.346229971 0.239027395 914.9982625 1360342.092 0.066598177 0.099070521 5.27E-06 5.278244844 0.360273946 RPLT(ph)PFHHR ddPTM_HeLa_A486_30min_R1 3 RPLTPFHHR 9 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 RPLT(1)PFHHR;RPLT(1)PFHHR;RPLT(1)PFHHR ;; 84.605 0.0043276 895080000 236011 244733 225308 73319 286187 201467 231885 250175 212008 218031 TRUE FALSE FALSE 219467.8477 225339.4658 312553.2916 170690.3373 250290.7579 176612.0499 173864.9204 193215.6138 230385.0241 163434.6185 1.342847982 1.378774386 1.912405673 1.044395239 1.531442728 1.080628153 1.063819416 1.182219628 1.409646416 1 17.31835408 -5.810296339 1.426253199 1.16592198 1.494541094 0.263907584 0.230452731 0.563948758 2.393928701 0.087934881 0.116674419 1.55E-06 5.810296339 0.328619114 RPMDSLDSRLS(ph)PPAGLFTSAR ddPTM_HeLa_A485_30min_R1 1 RPMDSLDSRLSPPAGLFTSAR 21 2 K7EK35;P42229-2;P42229 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 0 RPMDS(0.006)LDS(0.066)RLS(0.864)PPAGLFT(0.032)S(0.032)AR 55.051 0.0083251 0 51852 87492 84038 56479 82159 77112 90144 108710 78021 68799 TRUE FALSE FALSE 63386.29851 97723.42832 115127.1533 59564.30476 73978.96148 81149.46508 70883.99799 82048.70205 93679.09905 51648.67545 1.227258937 1.892080048 2.229043675 1.153259096 1.432349636 1.57118192 1.37242625 1.58859257 1.81377544 1 15.65644373 -5.276413627 24.99635048 1.448304399 1.793722861 0.216692795 0.313440465 1264.720736 2111181.589 0.088212183 0.131422721 5.29E-06 5.276413627 0.345418462 RPMEEDGEEKS(ph)PSK ddPTM_HeLa_A485_30min_R1 18 RPMEEDGEEKSPSK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.984)PS(0.016)K;RPMEEDGEEKS(0.993)PS(0.007)K;RPMEEDGEEKS(0.576)PS(0.424)K;RPMEEDGEEKS(0.998)PS(0.002)K;RPMEEDGEEKS(0.844)PS(0.156)K;RPMEEDGEEKS(0.998)PS(0.002)K;RPMEEDGEEKS(0.996)PS(0.004)K;RPMEEDGEEKS(0.602)PS(0.398)K;RPMEEDGEEKS(0.977)PS(0.023)K;RPMEEDGEEKS(0.999)PS(0.001)K;RPMEEDGEEKS(0.979)PS(0.021)K;RPMEEDGEEKS(0.996)PS(0.004)K;RPMEEDGEEKS(0.993)PS(0.007)K;RPMEEDGEEKS(0.964)PS(0.036)K;RPMEEDGEEKS(0.976)PS(0.024)K;RPMEEDGEEKS(0.987)PS(0.013)K;RPMEEDGEEKS(0.952)PS(0.048)K;RPMEEDGEEKS(1)PSK ;;;;;;;;;;;;;;;;; 206.63 2.23E-22 78613009000 13519040 9024535 6386981 28865100 13019180 11602713 23169810 16078060 9026249 38305540 TRUE FALSE FALSE 16526303.81 10079875.87 8749791.056 30441927.32 11722944.73 12210213.11 18219390.81 12134890.58 10837734.38 28756673.84 0.574694553 0.35052301 0.304269927 1.058603909 0.407659968 0.4246045 0.633570868 0.421985194 0.376877188 1 24.77739348 -10.53116223 2.701740588 1.026590199 0.507634841 0.33751146 0.207674668 20850373.96 20739074.35 4052057.023 0.054130094 2.94E-11 10.53116223 -0.518955358 RPMEEDGEEKS(ph)PSK ddPTM_HeLa_A486_30min_R1 17 RPMEEDGEEKSPSK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.861)PS(0.139)K;RPMEEDGEEKS(0.999)PS(0.001)K;RPMEEDGEEKS(0.99)PS(0.01)K;RPMEEDGEEKS(0.891)PS(0.109)K;RPMEEDGEEKS(0.999)PS(0.001)K;RPMEEDGEEKS(0.993)PS(0.007)K;RPMEEDGEEKS(0.963)PS(0.037)K;RPMEEDGEEKS(0.866)PS(0.134)K;RPMEEDGEEKS(0.987)PS(0.013)K;RPMEEDGEEKS(0.97)PS(0.03)K;RPMEEDGEEKS(0.998)PS(0.002)K;RPMEEDGEEKS(0.995)PS(0.005)K;RPMEEDGEEKS(0.994)PS(0.006)K;RPMEEDGEEKS(0.816)PS(0.184)K;RPMEEDGEEKS(0.991)PS(0.009)K;RPMEEDGEEKS(0.995)PS(0.005)K;RPMEEDGEEKS(0.999)PS(0.001)K ;;;;;;;;;;;;;;;; 178.06 1.50E-13 86679388000 15029770 12616410 5009388 14067830 10205870 17003880 26148530 22262510 10328380 35528640 TRUE FALSE FALSE 13976260.74 11616639.72 6949157.19 32750619.19 8925754.619 14906114.17 19605891.22 17193822.46 11223652.29 26632037.29 0.524791272 0.436190427 0.260932242 1.229745169 0.335151026 0.559706117 0.736176921 0.645606728 0.421434236 1 24.66665946 -11.66243352 2.006124244 9.999768682 0.578020909 0.19902781 0.257227701 9250430.829 226374.2537 381669111.6 0.069472574 2.18E-12 11.66243352 -9.421747772 RPMEEDGEEKS(ph)PSKK ddPTM_HeLa_A485_30min_R1 7 RPMEEDGEEKSPSKK 15 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.832)PS(0.168)KK;RPMEEDGEEKS(0.996)PS(0.004)KK;RPMEEDGEEKS(0.999)PS(0.001)KK;RPMEEDGEEKS(0.883)PS(0.117)KK;RPMEEDGEEKS(0.98)PS(0.02)KK;RPMEEDGEEKS(0.5)PS(0.5)KK;RPMEEDGEEKS(0.951)PS(0.049)KK ;;;;;; 177 3.44E-12 16332600000 10827770 5706978 2903181 28839230 8981374 9368792 21507900 15927450 6605201 37929870 TRUE FALSE FALSE 13236370.08 6374359.433 3977188.463 30414644.11 8087156.869 9859327.462 16912561.46 12021217.91 7930804.254 28474651.46 0.464847484 0.223860841 0.139674702 1.068130514 0.284012497 0.346249276 0.593951483 0.42217261 0.278521557 1 24.76317485 -10.69278904 2.644383692 1.088075494 0.427715139 0.32694142 0.247637972 49128185.34 41114169.52 28929360.94 0.063622297 2.03E-11 10.69278904 -0.660360355 RPMEEDGEEKS(ph)PSKK ddPTM_HeLa_A486_30min_R1 8 RPMEEDGEEKSPSKK 15 3 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.984)PS(0.016)KK;RPMEEDGEEKS(0.828)PS(0.172)KK;RPMEEDGEEKS(0.945)PS(0.055)KK;RPMEEDGEEKS(0.998)PS(0.002)KK;RPMEEDGEEKS(0.891)PS(0.109)KK;RPMEEDGEEKS(0.993)PS(0.007)KK;RPMEEDGEEKS(0.5)PS(0.5)KK;RPMEEDGEEKS(0.977)PS(0.023)KK ;;;;;;; 195.46 5.17E-18 10305830000 6957820 5216052 1362577 8003159 3626959 8325771 13185520 10644870 3924783 20110290 TRUE FALSE FALSE 6470112.748 4802713.043 1890203.305 18631758.61 3172031.982 7298622.024 9886363.434 8221265.477 4264986.351 15074542.49 0.429207902 0.318597599 0.125390426 1.235975064 0.210423101 0.484168726 0.65583174 0.545374129 0.282926421 1 23.84561088 -11.19249864 2.294444198 2.428127679 0.483513119 0.220033307 0.295454085 22848259.04 4855241.317 169326523.8 0.075538642 6.42E-12 11.19249864 -1.94461456 RPMEEDGEEKSPS(ph)K ddPTM_HeLa_A486_30min_R1 1 RPMEEDGEEKSPSK 14 2 Q12906;Q12906-5;Q12906-2;Q12906-3;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.125)PS(0.875)K 161.1 3.64E-12 1413500000 523350 438580 157480 507310 359800 650810 980050 767380 346140 1420100 TRUE FALSE FALSE 486665.8676 403825.3235 218460.4735 1181043.318 314670.529 570519.6792 734831.1241 592664.3258 376143.6939 1064497.717 0.457178874 0.379357623 0.205223994 1.109484125 0.295604701 0.535951999 0.690307844 0.556754906 0.353353218 1 20.02174142 -11.48542679 2.210913207 6.737807107 0.515362858 0.272309692 0.240485504 6024490.757 542119.9565 172952732.8 0.061790337 3.27E-12 11.48542679 -6.222444249 RPMEFEAALLSPGS(ph)PK ddPTM_HeLa_A485_30min_R1 4 RPMEFEAALLSPGSPK 16 1 Q9H9L7-2;Q9H9L7;B4DQP0 Q9H9L7-2 AKIRIN1 Akirin-1 1 0 RPMEFEAALLSPGS(1)PK;RPMEFEAALLSPGS(1)PK;RPMEFEAALLSPGS(1)PK;RPMEFEAALLSPGS(1)PK ;;; 168.99 2.50E-12 452381000 602683 556014 404023 1017561 747453 650583 1035720 996625 498507 1234898 TRUE FALSE FALSE 736747.7541 621035.0006 553487.9205 1073147.781 673033.9549 684646.5199 814429.9609 752201.1561 598552.7823 927060.6552 0.794713647 0.669896837 0.597035283 1.157580979 0.725986969 0.738513188 0.87850774 0.811382893 0.645645761 1 19.82230421 -11.49976153 2.267270156 3.943128466 0.783432176 0.163861794 0.148953703 8552806.699 765388.8864 129679553.4 0.037847819 3.16E-12 11.49976153 -3.15969629 RPMEFEAALLSPGS(ph)PK ddPTM_HeLa_A486_30min_R1 4 RPMEFEAALLSPGSPK 16 1 Q9H9L7-2;Q9H9L7;B4DQP0 Q9H9L7-2 AKIRIN1 Akirin-1 1 0 RPMEFEAALLSPGS(1)PK;RPMEFEAALLSPGS(1)PK;RPMEFEAALLSPGS(1)PK;RPMEFEAALLS(0.003)PGS(0.997)PK ;;; 165.06 3.54E-12 731371000 837180 799160 453255 595071 754683 971800 1171700 1063660 663039 1624900 TRUE FALSE FALSE 778498.0052 735831.6511 628767.4746 1385355.361 660023.621 851909.1965 878528.267 821487.8375 720511.7544 1218014.464 0.639153334 0.604123903 0.516223324 1.137388268 0.54188488 0.699424532 0.72127901 0.674448344 0.59154614 1 20.21609983 -11.24430938 2.218200059 2.099088124 0.684446688 0.251673735 0.165104129 13253778.96 2144967.05 73084392.27 0.044061539 5.70E-12 11.24430938 -1.414641437 RPMS(ph)DPSWNR ddPTM_HeLa_A485_30min_R1 2 RPMSDPSWNR 10 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 RPMS(0.989)DPS(0.011)WNR;RPMS(0.964)DPS(0.036)WNR ; 62.042 0.015293 1013300000 634450 756590 836300 719740 883580 638010 824240 690100 812720 969990 TRUE FALSE FALSE 775581.2137 845066.619 1145682.171 759057.5737 795607.6728 671415.217 648134.3906 520851.893 975825.4493 728189.3443 1.065081795 1.160503962 1.573330041 1.042390389 1.092583514 0.92203384 0.890062998 0.715269864 1.340071036 1 19.4739541 -5.499812688 23.65863963 0.979200115 1.264414379 0.287441781 0.192444428 471.9758655 484100.5894 0.054430191 0.080006428 3.16E-06 5.499812688 0.285214264 RPMS(ph)DPSWNR ddPTM_HeLa_A486_30min_R1 3 RPMSDPSWNR 10 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 RPMS(0.98)DPS(0.02)WNR;RPMS(0.625)DPS(0.375)WNR;RPMS(0.872)DPS(0.128)WNR ;; 113.54 0.00034007 1418680000 1129230 1409510 1263830 409360 1422940 1219280 1322520 1385870 1213550 1199620 TRUE FALSE FALSE 1050076.808 1297815.294 1753218.823 953010.7679 1244461.597 1068857.63 991611.5078 1070337.654 1318741.491 899227.3438 1.167754535 1.443256039 1.94969474 1.059810708 1.383923215 1.188640045 1.102737272 1.190285929 1.466527347 1 19.77832638 -5.324390595 24.99999617 1.210056669 1.512549462 0.305867558 0.221326355 272.8917802 108373.5869 0.062141817 0.092171228 4.74E-06 5.324390595 0.302492793 RPMS(ph)SPEMK ddPTM_HeLa_A485_30min_R1 6 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 RPMS(0.591)S(0.409)PEMK;RPMS(0.5)S(0.5)PEMK;RPMS(0.5)S(0.5)PEMK;RPMS(0.557)S(0.443)PEMK;RPMS(0.576)S(0.424)PEMK;RPMS(0.642)S(0.358)PEMK ;;;;; 114.87 0.00041572 1512856000 1771240 1455630 1438720 2469280 2197920 1763740 2462290 1964360 1832030 3407650 TRUE FALSE FALSE 2165246.227 1625853.266 1970962.398 2604170.514 1979087.367 1856086.699 1936201.626 1482597.63 2199701.617 2558185.568 0.846399204 0.635549386 0.770453255 1.01797561 0.773629322 0.725548108 0.756865198 0.579550463 0.859867886 1 21.28668949 -5.986397204 24.99885738 0.755615954 0.813046202 0 0.133762657 965.2110852 1773828.474 0.041684709 0.047244335 1.03E-06 5.986397204 0.057430248 RPMS(ph)SPEMK ddPTM_HeLa_A486_30min_R1 6 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 RPMS(0.5)S(0.5)PEMK;RPMS(0.5)S(0.5)PEMK;RPMS(0.5)S(0.5)PEMK;RPMS(0.5)S(0.5)PEMK;RPMS(0.5)S(0.5)PEMK;RPMS(0.593)S(0.407)PEMK ;;;;; 107.17 0.00063228 3464383000 2744250 2716870 1689690 1229507 2754800 2974520 3584610 3377600 2195370 3719180 TRUE FALSE FALSE 2551892.246 2501575.327 2343983.219 2862354.432 2409267.297 2607553.965 2687702.664 2608594.212 2385666.439 2787873.12 0.915354514 0.897306017 0.840778299 1.026716177 0.864195461 0.935320172 0.96406922 0.935693305 0.855729919 1 21.41073347 -5.200709708 24.99994474 0.935186644 0.885762332 0.185872533 0.052724362 453.4037997 186646.7426 0.013768179 0.023847182 6.30E-06 5.200709708 -0.049424311 RPMSAYMLWLNASR ddPTM_HeLa_A485_30min_R1 1 RPMSAYMLWLNASR 14 1 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 96.489 0.0035423 51229000 13178 16130 17337 12160 17506 15399 20474 23594 11268 19312 FALSE FALSE TRUE 16109.40064 18016.26319 23750.67775 12824.27001 15763.04117 16205.26783 16099.56264 17807.53451 13529.38424 14497.87381 1.11115608 1.242683129 1.638217994 0.884562121 1.087265718 1.11776858 1.110477498 1.228285936 0.933197821 1 13.82355372 -5.28168387 24.94669593 1.067852961 1.321885561 0.404665682 0.154110944 834.2904883 1028070.124 0.043611352 0.064776607 5.23E-06 5.28168387 0.2540326 RPMSAYMLWLNASR ddPTM_HeLa_A486_30min_R1 2 RPMSAYMLWLNASR 14 1 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 ; ; 131.39 5.30E-05 63546000 20586.2 30158 36336 12693.5 39133 27818 32689 32578 27144 36129 FALSE FALSE TRUE 19143.21369 27768.17025 50406.27231 29551.10949 34224.57424 24386.09799 24509.86645 25160.70057 29496.86378 27082.06324 0.7068595 1.02533437 1.861241954 1.09116906 1.263735851 0.900451999 0.905022126 0.929054051 1.089166047 1 14.72505003 -6.260791727 24.955781 0.956572425 1.212375981 0.140663275 0.274757842 113.4426074 4371290.469 0.097835512 0.092339777 5.49E-07 6.260791727 0.255803557 RPMSDPS(ph)WNRRPGNEER ddPTM_HeLa_A485_30min_R1 2 RPMSDPSWNRRPGNEER 17 3 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 RPMS(0.323)DPS(0.677)WNRRPGNEER;RPMS(0.318)DPS(0.682)WNRRPGNEER ; 108.17 0.0010577 1858840000 106810 252932 199469 84726 234134 212409 251843 376440 186709 136309 TRUE FALSE FALSE 130569.516 282510.1972 273260.8837 89354.36684 210822.7969 223530.4068 198034.6857 284117.4998 224179.7837 102329.6749 1.275969226 2.760784665 2.670397263 0.873200926 2.060231278 2.184414316 1.935261554 2.776491766 2.190760246 1 16.64286505 -5.989361949 24.99670106 2.123177017 1.944104671 0 0.672285909 1444.943602 3395223.668 0.210278819 0.238206892 1.02E-06 5.989361949 -0.179072346 RPMSDPS(ph)WNRRPGNEER ddPTM_HeLa_A486_30min_R1 2 RPMSDPSWNRRPGNEER 17 3 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 RPMS(0.403)DPS(0.597)WNRRPGNEER;RPMS(0.481)DPS(0.519)WNRRPGNEER ; 94.632 0.0040316 991090000 177514 160996 176250 59079 222130 123961 185283 195779 112908 169069 TRUE FALSE FALSE 165071.1853 148238.0906 244498.7201 137538.8977 194268.3841 108667.9522 138923.2337 151204.3955 122694.9563 126733.0219 1.302511238 1.169687966 1.929242406 1.085264879 1.532894751 0.857455701 1.096188125 1.193093901 0.968137226 1 16.95143296 -6.256455656 24.98717929 1.039619179 1.402388834 0.407296203 0.229328759 453.3664315 2273071.57 0.075141319 0.072909244 5.54E-07 6.256455656 0.362769655 RPMSS(ph)PEMK ddPTM_HeLa_A485_30min_R1 3 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 RPMS(0.47)S(0.53)PEMK;RPMS(0.058)S(0.942)PEMK;RPMS(0.195)S(0.805)PEMK ;; 106.79 0.00064297 3091640000 2522060 1983110 1834240 3302690 2974270 2292530 3179880 2609680 2340410 4376270 TRUE FALSE FALSE 3083083.546 2215017.464 2512801.705 3483107.592 2678141.236 2412563.326 2500472.661 1969651.888 2810108.819 3285346.428 0.938434839 0.674211232 0.764851366 1.060194919 0.815177728 0.734340618 0.761098629 0.599526391 0.855346272 1 21.64761408 -6.005727135 24.79321654 0.764504382 0.851719494 0.038163425 0.134865278 641.3075186 2776289.887 0.042561239 0.046781236 9.87E-07 6.005727135 0.087215112 RPMSS(ph)PEMK ddPTM_HeLa_A486_30min_R1 2 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 RPMS(0.11)S(0.89)PEMK;RPMS(0.304)S(0.696)PEMK ; 84.169 0.0031726 1436090000 754640 753120 478850 427620 780660 760040 874440 809480 517650 883530 TRUE FALSE FALSE 701743.633 693440.0284 664273.544 995520.9707 682742.3434 666273.9923 655645.8631 625179.0748 562520.3188 662288.3372 1.059574197 1.047036448 1.002997496 1.503153407 1.030883839 1.006018006 0.98997042 0.943968117 0.849358636 1 19.33709993 -5.989961442 24.99987476 0.963265833 1.151397213 0.317456756 0.135024096 279.5300761 696132.408 0.043695484 0.049493637 1.02E-06 5.989961442 0.18813138 RPNEDS(ph)DEDEEK ddPTM_HeLa_A485_30min_R1 4 RPNEDSDEDEEK 12 1 H0YE74;E9PLP8;Q12996 H0YE74 CSTF3 Cleavage stimulation factor subunit 3 1 0 RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK ;;; 228.84 1.25E-23 4958550000 3407160 2805280 1997100 5859370 2847650 2687030 3899200 3088570 2257310 6570490 TRUE FALSE FALSE 4165070.987 3133333.093 2735910.396 6179452.546 2564127.967 2827718.736 3066104.066 2331093.365 2710331.412 4932587.764 0.844398759 0.635231088 0.554660257 1.252781064 0.519834231 0.573272868 0.621601523 0.472590347 0.549474544 1 22.23391329 -4.252698663 22.17392825 0.672908693 0.844399177 0.03630619 0.234520349 875.6815304 2221218.766 0.058496389 0.614683442 5.59E-05 4.252698663 0.171490485 RPNEDS(ph)DEDEEK ddPTM_HeLa_A486_30min_R1 5 RPNEDSDEDEEK 12 1 H0YE74;E9PLP8;Q12996 H0YE74 CSTF3 Cleavage stimulation factor subunit 3 1 0 RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK ;;;; 213.55 3.61E-18 5859800000 4850330 4727480 2180240 2702480 3242660 5060880 5852960 4938210 3914330 8575010 TRUE FALSE FALSE 4510346.914 4352857.268 3024487.317 6291510.016 2835935.346 4436520.081 4388487.502 3813887.383 4253627.276 6427771.682 0.701696815 0.677195377 0.470534342 0.978801104 0.441200386 0.690211212 0.682738547 0.593345186 0.66175768 1 22.61588725 -10.29739154 2.696547502 1.004412036 0.653719633 0.356354611 0.138973227 4005400.382 4604434.169 142640.4926 0.033352881 5.04E-11 10.29739154 -0.350692403 RPNEDS(ph)DEDEEKGAVVPPVHDIYR ddPTM_HeLa_A485_30min_R1 8 RPNEDSDEDEEKGAVVPPVHDIYR 24 2 H0YE74;E9PLP8;Q12996 H0YE74 CSTF3 Cleavage stimulation factor subunit 3 1 0 RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR ;;;;;;; 242.9 2.51E-49 50782630000 4905930 5132150 4013381 8149130 7333870 6272720 9210660 10069080 5147510 11060580 TRUE FALSE FALSE 5997237.203 5732310.299 5498097.643 8594296.337 6603684.152 6601149.92 7242727.247 7599622.342 6180568.041 8303380.961 0.722264489 0.690358581 0.662151679 1.035035774 0.795300635 0.79499543 0.872262429 0.91524433 0.744343548 1 22.98526746 -1.734333032 0.20503502 0.933976433 2.71E-37 0.319557511 0.100547049 49.92004788 0.794877171 0.184838333 14.18905926 0.018436011 1.734333032 -0.933976433 RPNEDS(ph)DEDEEKGAVVPPVHDIYR ddPTM_HeLa_A486_30min_R1 7 RPNEDSDEDEEKGAVVPPVHDIYR 24 2 H0YE74;E9PLP8;Q12996 H0YE74 CSTF3 Cleavage stimulation factor subunit 3 1 0 RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR ;;;;;; 221.31 1.78E-38 44807960000 13446300 12400550 7205620 8966730 13045650 13853080 19764500 18737430 9835430 21770320 TRUE FALSE FALSE 12503783.81 11417885.26 9995829.037 20875000.59 11409342.93 12144027.84 14819213.05 14471326.22 10687972.99 16318890.17 0.766215329 0.699672903 0.612531179 1.279192419 0.69914944 0.744169959 0.90810177 0.886783726 0.654944845 1 23.96003961 -13.28334616 0.021842349 1.989274786 4.43E-06 0.068776207 0.183916568 7984.540941 14.78905745 900.1102762 500.0112554 5.21E-14 13.28334616 -1.989270357 RPNKQEES(ph)ESPVERPLK ddPTM_HeLa_A486_30min_R1 1 RPNKQEESESPVERPLK 17 3 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 RPNKQEES(0.766)ES(0.234)PVERPLK 200.29 2.91E-24 1286000000 653470 613380 351040 289610 584260 753040 841950 812490 550760 893550 TRUE FALSE FALSE 607665.1275 564773.5349 486972.0892 674226.7161 510976.6628 660137.5811 631285.2048 627503.7635 598500.3203 669799.264 0.90723469 0.843198202 0.72704184 1.006610118 0.762880299 0.985575256 0.942499102 0.936853468 0.893551774 1 19.35336927 -6.281309984 24.99822151 0.947174462 0.850985858 0.310534564 0.076050733 1092.702242 1374670.401 0.025838064 0.022818566 5.23E-07 6.281309984 -0.096188603 RPNKQEESES(ph)PVERPLK ddPTM_HeLa_A485_30min_R1 1 RPNKQEESESPVERPLK 17 3 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 RPNKQEES(0.017)ES(0.983)PVERPLK 194.08 1.51E-17 1023000000 532650 406520 327770 839470 603220 496940 648130 516270 464300 1054200 TRUE FALSE FALSE 651136.1549 454058.9777 449025.7626 885328.1204 543161.2988 522959.01 509651.7308 389653.973 557480.7512 791407.3411 0.822757284 0.573736121 0.567376292 1.118675648 0.686323301 0.660796259 0.643981556 0.492355773 0.704416957 1 19.59406092 -5.977134918 24.9998895 0.666005791 0.762109099 0.018777566 0.186525397 800.2474575 874958.4134 0.05837448 0.066186923 1.05E-06 5.977134918 0.096103308 RPNKQEESES(ph)PVERPLK ddPTM_HeLa_A486_30min_R1 1 RPNKQEESESPVERPLK 17 3 H3BLV9;Q96SB4;Q96SB4-3;Q96SB4-4;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 RPNKQEES(0.398)ES(0.602)PVERPLK 106.86 0.0011404 599220000 172240 172660 101470 82681 186480 248610 234940 207940 139680 245510 TRUE FALSE FALSE 160166.8654 158977.7928 140761.9015 192485.5465 163089.9395 217939.0259 176155.5271 160596.6013 151787.5749 184032.698 0.870317434 0.863856231 0.764874411 1.045931232 0.886200883 1.18424078 0.957196895 0.87265254 0.824785902 1 17.48960259 -5.259454088 24.99920183 0.967221491 0.836100047 0.280008155 0.098629295 253.7314141 3195016.095 0.028429641 0.046273983 5.50E-06 5.259454088 -0.131121444 RPNT(ph)SPDR ddPTM_HeLa_A485_30min_R1 2 RPNTSPDR 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.616)S(0.384)PDR;RPNT(0.5)S(0.5)PDR ; 79.693 0.0081355 3924060000 1057930 1081940 690550 1495600 511850 879230 676420 682670 1290560 1759020 TRUE FALSE FALSE 1293262.879 1208463.471 946013.1812 1577300.841 460888.4168 925265.1233 531897.3412 515244.1121 1549563.554 1320528.686 0.979352355 0.9151361 0.716389724 1.19444648 0.349018103 0.700677791 0.402791205 0.390180174 1.173441797 1 20.33268421 -5.759660195 24.99994073 0.627098839 0.931964228 0.193466362 0.272879371 72.19153715 1014376.141 0.079776508 0.097727038 1.74E-06 5.759660195 0.304865389 RPNT(ph)SPDR ddPTM_HeLa_A486_30min_R1 2 RPNTSPDR 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.803)S(0.197)PDR;RPNT(0.908)S(0.092)PDR ; 81.525 0.0069264 2306168000 582125 251130 709092 205841 290028 1081721 422305 315445 884397 682842 TRUE FALSE FALSE 541321.0436 231229.5442 983671.4125 479208.2506 253649.9838 948269.2612 316639.8223 243625.0596 961057.244 511853.9186 1.057569404 0.451749094 1.921781541 0.936220732 0.495551513 1.85261698 0.618613653 0.475965995 1.877600638 1 18.9653726 RPNT(ph)SPDRGS(ph)R ddPTM_HeLa_A485_30min_R1 1 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 RPNT(0.962)S(0.038)PDRGS(1)R 60.949 0.023034 1742900000 542660 736160 757630 643020 745800 659960 724530 683970 696890 765530 TRUE FALSE FALSE 663372.8448 822247.5083 1037908.865 678146.5544 671545.5333 694514.4851 569728.2466 516225.2851 836749.4307 574697.4595 1.154299247 1.430748465 1.80600914 1.180006181 1.168520101 1.208487133 0.991353341 0.898255728 1.455982477 1 19.13244315 -5.494815978 23.85839918 1.118837156 1.465827987 0.363557361 0.204256453 431.8832145 367177.7147 0.057794562 0.085462152 3.20E-06 5.494815978 0.346990831 RPNT(ph)SPDRGSR ddPTM_HeLa_A485_30min_R1 1 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.951)S(0.042)PDRGS(0.007)R 96.135 0.0094797 6396100000 213080 374130 368160 152180 379960 366920 422040 465630 338630 287360 TRUE FALSE FALSE 260478.9109 417881.249 504357.7044 160493.2081 342129.8483 386131.3638 331867.7063 351433.5124 406589.9349 215726.4405 1.207450094 1.937088695 2.337950338 0.743966329 1.585943047 1.78991209 1.538372883 1.629070186 1.884747804 1 17.71884349 -9.979385399 4.347259914 0.999978258 1.633111998 0.176190993 0.407442093 74145020.59 148014224 24852.02828 0.101597141 1.05E-10 9.979385399 0.633133741 RPNTATPS(ph)PIPS(ph)PTPASEPESEPELESASSCHRPLLIPPVRPVGPGR ddPTM_HeLa_A486_30min_R1 1 RPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGR 47 3 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 2 0 RPNTAT(0.002)PS(0.997)PIPS(0.996)PT(0.004)PASEPESEPELESASSCHRPLLIPPVRPVGPGR 98.437 3.61E-06 108100000 7203.3 5603.5 0 3448.7 8559.6 5285.8 4973.8 6334.1 5842 8128.2 TRUE FALSE FALSE 6698.385868 5159.458252 0 8028.747888 7485.975153 4633.691738 3729.302633 4891.963702 6348.389264 6092.845814 1.099385422 0.846805977 0 1.317733639 1.228650023 0.76051354 0.612078944 0.802902921 1.041941559 1 12.57290052 -7.761767772 24.26023496 1.020970876 0.825666439 0.043933764 0.348264583 22.54040422 1663399.311 0.286772824 0.091622999 1.73E-08 7.761767772 -0.195304437 RPNTATPSPIPS(ph)PT(ph)PASEPES(ph)EPELESASSCHRPLLIPPVRPVGPGR ddPTM_HeLa_A486_30min_R1 1 RPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGR 47 3 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 3 0 RPNT(0.004)AT(0.004)PS(0.025)PIPS(0.811)PT(0.616)PAS(0.581)EPES(0.847)EPELES(0.039)AS(0.037)S(0.036)CHRPLLIPPVRPVGPGR 41.81 0.022893 216210000 40061 55777 37223 7928.3 50653 27086 43655 37341 33712 25061 TRUE FALSE FALSE 37252.93078 51357.02738 51636.74247 18457.48307 44299.62842 23744.40471 32732.05726 28839.26945 36634.1833 18785.56248 1.98306177 2.733856249 2.748746146 0.982535556 2.358174181 1.263970921 1.742404961 1.535182642 1.950124376 1 14.19733669 -1 0.128009101 0.881079065 6.243765021 0.330801222 0.504273992 96.78390298 0.842867687 2.81609742 93.44440631 0.1 1 5.362685956 RPNTATPSPIPS(ph)PTPAS(ph)EPES(ph)EPELESASSCHRPLLIPPVRPVGPGR ddPTM_HeLa_A485_30min_R1 1 RPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGR 47 3 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 3 0 RPNTATPS(0.005)PIPS(0.972)PT(0.093)PAS(0.891)EPES(0.634)EPELES(0.147)AS(0.132)S(0.125)CHRPLLIPPVRPVGPGR 74.468 0.00030243 403330000 17699 32314 26850 10945 33204 23624 29061 34293 25223 17958 TRUE FALSE FALSE 21636.08149 36092.84121 36782.93232 11542.89764 29898.09317 24860.91611 22851.87994 25882.58798 30285.02474 13481.40109 1.604883746 2.677232207 2.72842059 0.856209051 2.217728927 1.844089938 1.695067136 1.919873743 2.246430066 1 13.71868282 -11.00286199 2.938155916 0.001120068 1.979659641 0.24255098 0.517748827 301978662.4 299182375 2038674189 0.128343954 9.93E-12 11.00286199 1.978539573 RPNTATPSPIPSPTPAS(ph)EPES(ph)EPELESASSCHRPLLIPPVRPVGPGR ddPTM_HeLa_A485_30min_R1 1 RPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVGPGR 47 3 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 2 0 RPNTATPS(0.004)PIPS(0.127)PT(0.334)PAS(0.597)EPES(0.851)EPELES(0.03)AS(0.029)S(0.028)CHRPLLIPPVRPVGPGR 46.277 0.0092526 171880000 16887 21263 22626 7983.7 28858 13054 20946 23853 14369 17006 TRUE FALSE FALSE 20643.45489 23749.52289 30996.29895 8419.829315 25984.79619 13737.48725 16470.71599 18003.01435 17252.7265 12766.71717 1.616974404 1.860268585 2.427898929 0.659514047 2.035354574 1.076039131 1.290129308 1.410152203 1.351383153 1 13.64009998 -5.252002014 24.99883377 1.303308009 1.957569388 0.416769619 0.381391272 685.4843587 1815789.912 0.098885049 0.168391569 5.60E-06 5.252002014 0.654261379 RPNTS(ph)PDR ddPTM_HeLa_A485_30min_R1 3 RPNTSPDR 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.034)S(0.966)PDR;RPNT(0.142)S(0.858)PDR;RPNT(0.029)S(0.971)PDR ;; 92.866 0.0020345 5269850000 916995 821577 587796 1224370 461535 732742 678915 608840 996175 1443250 TRUE FALSE FALSE 1120977.374 917653.2834 805246.2006 1291254.233 415582.9549 771107.2381 533859.264 459521.0354 1196098.185 1083474.336 1.034613684 0.846954333 0.743207452 1.191771867 0.383565112 0.711698665 0.492729035 0.424118062 1.103946947 1 20.04723355 -5.760835199 24.99998786 0.648835986 0.931414516 0.212615521 0.245075864 23.86927172 987641.5418 0.071653009 0.087010297 1.73E-06 5.760835199 0.28257853 RPNTS(ph)PDR ddPTM_HeLa_A486_30min_R1 2 RPNTSPDR 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.149)S(0.851)PDR;RPNT(0.036)S(0.964)PDR ; 88.596 0.0024656 1473770000 417240 161372 483410 144866 186367 715000 286480 252970 617190 469900 TRUE FALSE FALSE 387993.6306 148584.295 670599.2982 337255.3691 162991.1131 626790.5696 214799.6739 195374.2533 670688.5261 352233.9815 1.101522428 0.421834073 1.903846118 0.957475391 0.462735345 1.779472176 0.609820986 0.554671791 1.904099438 1 18.42617457 -7.759726209 24.99918981 1.452049533 0.983644004 0.114814711 0.530483776 97.01371154 1415836.96 0.391653932 0.130436396 1.74E-08 7.759726209 -0.468405528 RPNTS(ph)PDRGS(ph)R ddPTM_HeLa_A485_30min_R1 1 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 RPNT(0.287)S(0.713)PDRGS(1)R 89.936 0.010278 1989500000 832090 1192800 1282000 1046200 1303600 1045000 1204400 1088900 1186100 1309600 TRUE FALSE FALSE 1017185.55 1332287.584 1756265.148 1103351.257 1173809.007 1099714.584 947070.101 821845.5677 1424139.39 983140.8214 1.034628537 1.355134031 1.786382083 1.122271838 1.193937818 1.118572803 0.963310729 0.835938809 1.448560938 1 19.90703855 -5.486606044 24.69345258 1.087045111 1.399351912 0.262079924 0.226677277 662.4981055 451009.8947 0.064383931 0.095457098 3.26E-06 5.486606044 0.312306801 RPNTSPDRGS(ph)R ddPTM_HeLa_A485_30min_R1 3 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.387)S(0.13)PDRGS(0.484)R;RPNT(0.159)S(0.088)PDRGS(0.753)R;RPNT(0.014)S(0.003)PDRGS(0.984)R ;; 90.476 0.0019328 10953600000 605190 1070720 920570 504790 987090 980870 1112290 1316580 933580 698030 TRUE FALSE FALSE 739812.4276 1195931.39 1261127.151 532365.3995 888811.8537 1032226.836 874640.1549 993686.6907 1120940.943 524023.9673 1.411791204 2.282207427 2.406621128 1.015918036 1.696128248 1.969808446 1.669084259 1.896261913 2.139102432 1 18.99927327 -10.39504958 3.182337949 0.99012827 1.835199963 0.288204522 0.392170342 64944867.92 83340874.86 5872923.725 0.099681395 4.03E-11 10.39504958 0.845071693 RPNTSPDRGS(ph)R ddPTM_HeLa_A486_30min_R1 2 RPNTSPDRGSR 11 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RPNT(0.011)S(0.002)PDRGS(0.987)R;RPNT(0.067)S(0.317)PDRGS(0.616)R ; 87.914 0.0021871 1629190000 363640 217500 398880 161479 400500 296250 375840 356170 302760 425030 TRUE FALSE FALSE 338150.7138 200264.5079 553337.0184 375931.2727 350265.5555 259701.687 281800.8568 275077.8661 329003.4806 318599.7215 1.061365378 0.628577159 1.736778098 1.179948529 1.099390652 0.815134696 0.884498126 0.863396442 1.03265464 1 18.28138548 -6.112315282 5.132225367 0.909441681 1.154332389 0.158726221 0.256975987 0.44394345 17.16247041 0.088666676 0.089233241 7.72E-07 6.112315282 0.244890709 RPPEEDFRHS(ph)PEEDFR ddPTM_HeLa_A485_30min_R1 4 RPPEEDFRHSPEEDFR 16 2 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR ;;; 152.13 1.84E-08 10592700000 1681980 2386830 2344890 1741370 2483660 2310150 2487660 2488920 2107770 2126310 TRUE FALSE FALSE 2056130.648 2665949.006 3212362.39 1836496.634 2236378.09 2431105.882 1956151.119 1878508.468 2530780.105 1596260.049 1.288092532 1.670121988 2.012430489 1.150499654 1.401011127 1.523001145 1.225458922 1.17681857 1.585443492 1 20.60626427 -8.780753075 0.125817533 0.591876599 1.839966955 0.256005075 0.245864484 24.9479194 1.199028876 7.595409587 3.654538293 1.66E-09 8.780753075 1.248090356 RPPEEDFRHS(ph)PEEDFR ddPTM_HeLa_A486_30min_R1 4 RPPEEDFRHSPEEDFR 16 2 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR;RPPEEDFRHS(1)PEEDFR ;;; 158.33 3.77E-09 11334000000 1689640 1860640 1720470 580123 2244380 1673380 1847400 1902970 1638810 1873610 TRUE FALSE FALSE 1571204.961 1713196.11 2386682.06 1350555.662 1962868.932 1466935.389 1385160.98 1469705.273 1780863.37 1404445.861 1.118736582 1.219837772 1.699376335 0.961628853 1.397610963 1.044494081 0.986268691 1.046466306 1.268018526 1 20.42156958 -6.278110655 24.27733997 1.06677984 1.281800805 0.228676428 0.193149856 875.4245865 1274821.586 0.067176699 0.05941512 5.27E-07 6.278110655 0.215020965 RPPEEDFRHS(ph)PEEDFRQS(ph)PQEHFR ddPTM_HeLa_A485_30min_R1 5 RPPEEDFRHSPEEDFRQSPQEHFR 24 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR ;;;; 184.36 8.22E-21 15448900000 1071790 1391080 1477150 1095434 1617640 1265090 1450890 1616690 1266020 1427470 TRUE FALSE FALSE 1310205.988 1553754.705 2023609.254 1155274.786 1456582.082 1331328.156 1140895.499 1220194.243 1520098.601 1071628 1.22263135 1.449901184 1.888350486 1.078055805 1.359223613 1.242341705 1.064637635 1.138636022 1.418494666 1 20.03137275 -5.300636831 24.99994382 1.196208622 1.513255628 0.38079 0.195030587 562.2944989 358627.4962 0.054948448 0.081503028 5.00E-06 5.300636831 0.317047005 RPPEEDFRHS(ph)PEEDFRQS(ph)PQEHFR ddPTM_HeLa_A486_30min_R1 5 RPPEEDFRHSPEEDFRQSPQEHFR 24 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR;RPPEEDFRHS(1)PEEDFRQS(1)PQEHFR ;;;; 201.63 7.55E-29 13562630000 1365381 1296389 1443212 453385 1689750 1268559 1448437 1429973 1102001 1350689 TRUE FALSE FALSE 1269674.843 1193658.414 2002062.337 1055503.193 1477805.799 1112057.088 1086022.743 1104399.364 1197523.334 1012467.683 1.254039871 1.178959521 1.977408633 1.042505564 1.459607871 1.098363046 1.072649291 1.09079962 1.182776847 1 19.94944443 -6.272092117 22.65057673 1.093575875 1.385357668 0.281134367 0.234651101 280.6806517 596798.6213 0.081055841 0.072375668 5.34E-07 6.272092117 0.291781793 RPPES(ph)PPIVEEWNSR ddPTM_HeLa_A485_30min_R1 6 RPPESPPIVEEWNSR 15 1 A0A3B3IU46;Q9BTL3 A0A3B3IU46 FAM103A1 RNMT-activating mini protein 1 0 RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR ;;;;; 168.81 2.35E-12 3954280000 509407 656045 579462 617176 712182 627666 800929 756588 628420 793363 TRUE FALSE FALSE 622722.8297 732763.7559 793829.1072 650890.7621 641274.6595 660529.6212 629803.9762 571033.6067 754538.1298 595592.2049 1.04555235 1.230311193 1.332839988 1.092846341 1.076700894 1.109029997 1.057441604 0.958766085 1.266870392 1 19.18396535 -5.486795282 24.00054695 1.07732779 1.206842418 0.241246534 0.099902154 493.3483631 328144.9863 0.027516664 0.040792243 3.26E-06 5.486795282 0.129514629 RPPES(ph)PPIVEEWNSR ddPTM_HeLa_A486_30min_R1 6 RPPESPPIVEEWNSR 15 1 A0A3B3IU46;Q9BTL3 A0A3B3IU46 FAM103A1 RNMT-activating mini protein 1 0 RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR ;;;;; 132.83 8.52E-06 4650690000 399924 428168 360001 139704.7 493853 429464 471493 457187 367692 443062 TRUE FALSE FALSE 371891.3928 394238.4083 499403.0284 325239.6019 431909.3517 376481.0982 353520.4645 353095.5004 399563.8386 332116.3914 1.119762235 1.187048934 1.503698828 0.979294038 1.300475866 1.133581804 1.064447506 1.063167942 1.203083765 1 18.3413294 -6.485030088 7.337552384 1.089292887 1.219026161 0.187275266 0.133509738 0.428995757 70.6086782 0.046882966 0.040505794 3.27E-07 6.485030088 0.129733275 RPPGGT(ph)SPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR ddPTM_HeLa_A485_30min_R1 1 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR 45 1 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 RPPGGT(0.499)S(0.499)PPNGGLPGPLAT(0.001)SAAPPGPPAAASPCLGPVAAAGSGLR 197.79 7.66E-31 393060000 107480 139190 160460 102810 168010 123110 157580 157590 140020 158290 TRUE FALSE FALSE 131388.5552 155467.0597 219820.8313 108426.25 151282.3345 129555.8492 123911.7457 118940.8054 168120.7297 118831.2161 1.10567374 1.308301512 1.849857626 0.912439118 1.273085805 1.090250975 1.042754166 1.000922227 1.414785905 1 16.85855435 -5.300449054 24.99985127 1.108738683 1.40998101 0.302409482 0.219951368 664.8534413 426078.5012 0.061280416 0.090895301 5.01E-06 5.300449054 0.301242328 RPPGGT(ph)SPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR ddPTM_HeLa_A486_30min_R1 1 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR 45 1 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 RPPGGT(0.484)S(0.484)PPNGGLPGPLAT(0.024)S(0.007)AAPPGPPAAASPCLGPVAAAGSGLR 77.052 0.00037856 454630000 53118 63880 50598 15682 70416 50307 58809 52781 49128 57830 TRUE FALSE FALSE 49394.7025 58817.91615 70190.90066 36508.48852 61583.76868 44100.63382 44094.36618 40763.9185 53386.4546 43348.99159 1.13946601 1.356846238 1.619204925 0.842199257 1.420650548 1.017339325 1.017194739 0.940366016 1.231550092 1 15.40371081 -5.809781248 1.061155406 1.041232843 1.332291774 0.216871772 0.205386665 0.75914149 1.828859809 0.091377174 0.131660931 1.55E-06 5.809781248 0.291058931 RPPGGT(ph)SPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR ddPTM_HeLa_A485_30min_R1 2 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR 46 2 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 RPPGGT(0.5)S(0.5)PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR;RPPGGT(0.557)S(0.443)PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR ; 136.98 3.80E-09 5240300000 157125 412770 339526 155957 382070 323330 391810 682330 276437 190060 TRUE FALSE FALSE 192076.9142 461039.8609 465130.7963 164476.536 344029.7693 340259.0588 308096.5927 514987.4976 331915.3703 142681.5398 1.346193169 3.231250949 3.259922741 1.15275274 2.41117225 2.384744791 2.159330444 3.609349173 2.326267089 1 17.12243916 -8.040705932 23.34595328 0.999999988 2.474966764 0.247859917 0.748943315 5278.782068 3027519.876 0.719509238 0.185776486 9.11E-09 8.040705932 1.474966776 RPPGGT(ph)SPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR ddPTM_HeLa_A486_30min_R1 2 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR 46 2 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 RPPGGT(0.55)S(0.45)PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR;RPPGGT(0.565)S(0.435)PPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRR ; 146.19 1.14E-11 3764200000 511200 492260 482320 186713 827810 402140 567870 617350 325540 615270 TRUE FALSE FALSE 475367.5198 453251.5248 669087.221 434677.3 723978.3508 352528.0555 425782.9197 476792.8817 353758.0693 461202.3873 1.030713485 0.982760578 1.450745355 0.942487099 1.5697628 0.764367369 0.923201899 1.033804019 0.767034341 1 18.81504046 -6.309628445 24.99997465 0.901389301 1.183634515 0.351645765 0.201715308 468.2378396 242915.4248 0.068061236 0.060024482 4.90E-07 6.309628445 0.282245214 RPPGPTT(ph)SPASTSLSSPGQR ddPTM_HeLa_A485_30min_R1 1 RPPGPTTSPASTSLSSPGQR 20 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 RPPGPT(0.029)T(0.583)S(0.388)PASTSLSSPGQR 127.16 5.15E-07 534320000 145520 191960 196940 180460 203560 176610 195220 182220 171280 240790 TRUE FALSE FALSE 177890.422 214408.0522 269796.3014 190318.0729 183292.8517 185857.0265 153509.6522 137530.2593 205654.3249 180765.4844 0.98409507 1.186111679 1.49252111 1.052845201 1.01398147 1.028166561 0.849219931 0.760821457 1.137685801 1 17.46375971 -5.505737221 15.29394705 0.957931447 1.226642223 0.368329966 0.149662937 5.041954146 4496.852209 0.044198401 0.063051959 3.12E-06 5.505737221 0.268710776 RPPGPTT(ph)SPASTSLSSPGQR ddPTM_HeLa_A486_30min_R1 1 RPPGPTTSPASTSLSSPGQR 20 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 RPPGPT(0.074)T(0.539)S(0.383)PAS(0.003)T(0.001)SLSSPGQR 109.39 2.53E-05 833940000 173830 169320 139370 55674 172870 149220 168880 181690 144230 164050 TRUE FALSE FALSE 161645.4147 155902.4665 193337.7965 129611.8856 151187.0327 130810.7536 126624.4378 140323.1533 156731.9725 122970.8122 1.314502293 1.267800576 1.572225091 1.054005282 1.229454616 1.063754489 1.029711323 1.141109429 1.274546128 1 16.9079564 -5.28189472 24.98425418 1.118407227 1.373138471 0.561715023 0.109735059 595.0344708 726776.6297 0.030664057 0.045541286 5.23E-06 5.28189472 0.254731245 RPPGPTTS(ph)PASTSLSSPGQR ddPTM_HeLa_A485_30min_R1 2 RPPGPTTSPASTSLSSPGQR 20 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 RPPGPT(0.021)T(0.132)S(0.846)PASTSLSSPGQR;RPPGPT(0.008)T(0.191)S(0.801)PASTSLSSPGQR ; 104.53 2.32E-05 1118400000 275393 320553 346007 288826 358337 303093 309194 311182 315816 423098 TRUE FALSE FALSE 336653.2228 358038.8849 474009.3879 304603.833 322659.7101 318962.4808 243132.176 234864.1266 379197.3744 317627.4551 1.059899632 1.12722902 1.492343877 0.958997178 1.015843262 1.004203118 0.76546335 0.739432699 1.19384319 1 18.2769761 -5.477961321 24.38507076 0.938195236 1.218082535 0.375002932 0.160436993 348.8183601 189368.3274 0.046089228 0.068356874 3.33E-06 5.477961321 0.2798873 RPPGPTTS(ph)PASTSLSSPGQR ddPTM_HeLa_A486_30min_R1 1 RPPGPTTSPASTSLSSPGQR 20 1 Q01970;Q01970-2 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 RPPGPT(0.091)T(0.2)S(0.708)PASTSLSSPGQR 93.21 0.00028507 494920000 113960 133150 118630 40076 138300 112510 131750 112930 130160 132290 TRUE FALSE FALSE 105971.9925 122598.7091 164566.713 93298.95333 120953.1244 98629.66012 98784.75649 87218.30424 141442.3736 99163.72294 1.068656857 1.236326203 1.659545529 0.940857711 1.219731579 0.994614333 0.996178376 0.879538421 1.426351991 1 16.59752482 -5.312300145 24.99960743 1.060911663 1.312993642 0.25385871 0.201010565 476.027408 233980.8776 0.055738421 0.082673561 4.87E-06 5.312300145 0.25208198 RPPKS(ph)PEEEGQMS(ph)S ddPTM_HeLa_A486_30min_R1 1 RPPKSPEEEGQMSS 14 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 0 RPPKS(1)PEEEGQMS(0.553)S(0.447) 108.71 0.00016132 201010000 137360 171670 131870 100570 208100 201560 239430 236080 161300 239040 TRUE FALSE FALSE 127731.7733 158066.244 182933.5956 234132.0425 181998.1575 176693.5765 179522.0816 182329.7376 175281.6139 179182.8281 0.712857223 0.882150626 1.020932628 1.306665627 1.015712049 0.986107756 1.001893337 1.017562562 0.978227745 1 17.45107286 -4.521553305 2.56755304 1.046840624 0.714915024 0.567828238 0.090958918 0.246693781 2.877998696 0.026032442 0.13729784 3.01E-05 4.521553305 -0.3319256 RPPPPPVPLLPPGT(ph)SPPVDPFTTLASK ddPTM_HeLa_A486_30min_R1 1 RPPPPPVPLLPPGTSPPVDPFTTLASK 27 1 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 RPPPPPVPLLPPGT(0.5)S(0.5)PPVDPFTTLASK 63.516 0.015112 93146000 84228 62707 38357 25576 58576 66611 62657 65804 49105 79589 TRUE FALSE FALSE 78324.05215 57737.86895 53209.85764 59542.22054 51228.85188 58393.21207 46979.55588 50821.86569 53361.46094 59659.39636 1.312853581 0.967791705 0.891894 0.99803592 0.85868874 0.978776448 0.78746281 0.851866911 0.894435147 1 15.86446176 -4.246001307 2.779543948 0.902110975 1.398593186 0.774332936 0.065185003 0.206652877 2.125701068 0.016675581 0.238265806 5.68E-05 4.246001307 0.496482211 RPPS(ph)AFFLFCSEYRPK ddPTM_HeLa_A485_30min_R1 2 RPPSAFFLFCSEYRPK 16 2 Q5T7C4;P09429 Q5T7C4 HMGB1 High mobility group protein B1 1 0 RPPS(1)AFFLFCSEYRPK;RPPS(1)AFFLFCSEYRPK ; 231.37 7.82E-35 309250000 222674 256174 223495 243041 292567 307890 356460 403200 208664 307650 TRUE FALSE FALSE 272207.0631 286131.3209 306175.1009 256317.7144 263438.0022 324010.6443 280299.409 304314.5678 250540.9508 230958.5169 1.178597208 1.238886207 1.325671402 1.109799794 1.140629087 1.402895415 1.2136353 1.3176157 1.084787668 1 17.81727422 -7.942466868 5.040281282 1.00106149 1.239887566 0.481473564 0.084550891 0.147376576 7.193478927 0.082115015 0.021414917 1.14E-08 7.942466868 0.238826076 RPPS(ph)AFFLFCSEYRPK ddPTM_HeLa_A486_30min_R1 1 RPPSAFFLFCSEYRPK 16 2 Q5T7C4;P09429 Q5T7C4 HMGB1 High mobility group protein B1 1 0 RPPS(1)AFFLFCSEYRPK 184.95 4.09E-18 161910000 218120 197800 158740 122140 229860 232220 277140 263500 190410 266830 TRUE FALSE FALSE 202830.9144 182125.6076 220208.3792 284348.0926 201028.8154 203571.0574 207796.6407 203506.8022 206914.8921 200014.0312 1.014083428 0.910564156 1.100964657 1.421640726 1.005073565 1.017783883 1.038910318 1.01746263 1.034501884 1 17.60974168 RPPS(ph)PDVIVLS(ph)DNEQPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 0 RPPS(1)PDVIVLS(1)DNEQPS(0.694)S(0.306)PR 113.33 1.41E-05 5197500000 204120 260350 242980 189870 302590 231510 257780 253820 238550 234070 TRUE FALSE FALSE 249525.7898 290795.6678 332868.4132 200242.1173 272463.0771 243631.5056 202703.1971 191570.247 286424.7969 175720.6567 1.420013984 1.654874692 1.8943044 1.139547968 1.550546659 1.386470493 1.153553605 1.09019765 1.630000719 1 17.42292427 -5.844273659 0.945244996 1.235740583 1.627175824 0.288565914 0.233952904 0.738335769 1.431018038 0.115779224 0.166825679 1.43E-06 5.844273659 0.391435241 RPPS(ph)PDVIVLS(ph)DNEQPS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 0 RPPS(1)PDVIVLS(1)DNEQPS(0.556)S(0.444)PR;RPPS(1)PDVIVLS(1)DNEQPS(0.562)S(0.438)PR ; 202.16 1.80E-26 4746400000 681430 691930 652200 351660 842740 626350 750710 714950 673780 676670 TRUE FALSE FALSE 633665.2759 637098.9468 904749.3065 818682.2519 737035.691 549077.3053 562874.4178 552171.4922 732183.7929 507227.4276 1.249272499 1.256041989 1.783715267 1.614033878 1.453067502 1.082507127 1.109708165 1.088607323 1.443501974 1 18.95227323 -6.218022199 6.757967175 1.148287086 1.48603544 0.443198717 0.182577519 0.23222393 29.04307373 0.064518986 0.063956373 6.05E-07 6.218022199 0.337748354 RPPS(ph)PDVIVLS(ph)DNEQPSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 0 RPPS(1)PDVIVLS(1)DNEQPS(0.071)S(0.929)PR;RPPS(1)PDVIVLS(1)DNEQPS(0.064)S(0.936)PR ; 208.3 9.70E-27 7153900000 419420 676890 583200 427789 715640 562510 590280 652740 552810 534510 TRUE FALSE FALSE 512718.532 756046.3973 798949.949 451158.0299 644388.3688 591962.1538 464161.8559 492654.4915 663753.8963 401266.4939 1.277750671 1.884150331 1.991070675 1.124335165 1.605886309 1.475234446 1.156742122 1.227748888 1.654147322 1 18.61420117 -5.264947532 24.99972552 1.341578941 1.734306535 0.320634862 0.263294224 360.0729568 2565948.472 0.072589956 0.112747952 5.43E-06 5.264947532 0.392727594 RPPS(ph)PDVIVLS(ph)DNEQPSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 0 RPPS(1)PDVIVLS(1)DNEQPS(0.001)S(0.999)PR 230.74 3.87E-36 1196300000 123640 133660 134550 70522 150570 124450 138030 118090 121600 130120 TRUE FALSE FALSE 114973.4745 123068.2948 186651.3634 164178.78 131684.1066 109096.6243 103493.4341 91203.48489 132140.3859 97537.10506 1.178766526 1.26175874 1.913644692 1.683244339 1.350092424 1.11851407 1.061067314 0.935064505 1.354770431 1 16.57366353 -6.130654115 3.189360152 1.085541862 1.520226424 0.448613573 0.21728579 0.255614637 4.90587633 0.08159865 0.082180516 7.40E-07 6.130654115 0.434684561 RPPS(ph)PDVIVLS(ph)DNEQPSSPR ddPTM_HeLa_A485_30min_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 0 RPPS(1)PDVIVLS(1)DNEQPSSPR 201.1 1.29E-26 615620000 157040 209910 242960 157500 252890 207790 226470 258020 216060 210170 TRUE FALSE FALSE 191973.0062 234457.1485 332841.0144 166103.8262 227711.3836 218669.5631 178082.8344 194740.1904 259421.2602 157778.4869 1.216724853 1.485989333 2.109546244 1.052765998 1.443234678 1.385927622 1.128688948 1.234263265 1.644211865 1 17.26754098 RPPS(ph)PDVIVLSDNEQPS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 0 RPPS(1)PDVIVLSDNEQPS(0.62)S(0.379)PR;RPPS(1)PDVIVLSDNEQPS(0.534)S(0.466)PR ; 105.55 1.66E-05 251030000 140800 171010 165409 59351 192594 127790 130364 162903 133874 142721 TRUE FALSE FALSE 130930.6471 157458.5448 229459.7946 138172.1274 168437.0647 112024.5691 97745.54835 125813.543 145478.3061 106982.7326 1.223848409 1.471812702 2.144830188 1.291536718 1.574432252 1.047127572 0.913657241 1.176017287 1.359829783 1 16.70701843 -6.258809425 24.72271705 1.098723125 1.557086709 0.426342538 0.256005531 203.0799735 1909045.02 0.089233295 0.085357991 5.51E-07 6.258809425 0.458363584 RPPS(ph)PDVIVLSDNEQPSS(ph)PR ddPTM_HeLa_A485_30min_R1 5 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 0 RPPS(1)PDVIVLSDNEQPS(0.369)S(0.631)PR;RPPS(1)PDVIVLSDNEQPS(0.032)S(0.968)PR;RPPS(1)PDVIVLSDNEQPS(0.109)S(0.891)PR;RPPS(1)PDVIVLSDNEQPS(0.112)S(0.888)PR;RPPS(1)PDVIVLSDNEQPS(0.017)S(0.983)PR ;;;; 221.46 1.00E-35 3477540000 488484 663237 662780 451948 732070 594102 659424 737310 586585 627574 TRUE FALSE FALSE 597145.5806 740796.7978 907969.9026 476636.7748 659182.5403 625208.2621 518532.6754 556483.5664 704307.229 471131.3514 1.267471542 1.572378479 1.927211806 1.011685538 1.399148111 1.327035996 1.100611695 1.181164371 1.494927533 1 18.84576981 -5.273663002 24.9733684 1.231320005 1.58735642 0.393949736 0.211238664 765.268929 1563474.758 0.059012676 0.088258857 5.33E-06 5.273663002 0.356036415 RPPS(ph)PDVIVLSDNEQPSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 0 RPPS(1)PDVIVLSDNEQPS(0.046)S(0.954)PR;RPPS(1)PDVIVLSDNEQPS(0.024)S(0.976)PR;RPPS(1)PDVIVLSDNEQPS(0.015)S(0.985)PR ;; 243.96 1.13E-46 2080520000 351180 438580 371210 116139 421420 350650 404670 392540 356010 355510 TRUE FALSE FALSE 326564.0955 403825.3235 514952.4533 270377.4613 368561.574 307390.3681 303417.2858 303167.2111 386869.2334 266487.982 1.225436483 1.515360357 1.932366516 1.014595327 1.383032628 1.153486794 1.138577746 1.137639337 1.451732384 1 18.02371095 -5.283235033 24.94190125 1.193747052 1.553485146 0.405037731 0.207954806 766.0752483 876658.1611 0.057879396 0.085927723 5.21E-06 5.283235033 0.359738094 RPPS(ph)PDVIVLSDNEQPSSPR ddPTM_HeLa_A485_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 RPPS(1)PDVIVLSDNEQPSSPR;RPPS(1)PDVIVLSDNEQPSSPR ; 210.96 5.33E-27 2064710000 340220 477690 521100 334420 584930 483530 547140 599200 475650 468120 TRUE FALSE FALSE 415900.7653 533551.6901 713876.5748 352688.5178 526692.3154 508846.8831 430239.0693 452245.2605 571108.5921 351426.2991 1.183465114 1.518246334 2.031369242 1.003591702 1.498727661 1.447947648 1.22426543 1.286885078 1.625116258 1 18.42286263 -12.43548999 0.240818755 2.32E-11 1.474360985 0.170849971 0.270087473 133.7447844 2.631292399 67.52031014 0.438817456 3.67E-13 12.43548999 1.474360985 RPPS(ph)PDVIVLSDNEQPSSPR ddPTM_HeLa_A486_30min_R1 3 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 RPPS(1)PDVIVLSDNEQPSSPR;RPPS(1)PDVIVLSDNEQPSSPR;RPPS(1)PDVIVLSDNEQPSSPR ;; 309.35 7.11E-102 1165710000 649794 736630 645695 253774 847200 663730 749600 780960 539289 826560 TRUE FALSE FALSE 604246.7961 678256.756 895725.3963 590798.697 740936.2762 581845.7409 562042.1515 603152.4562 586035.0047 619583.996 0.975245972 1.094697023 1.445688401 0.953540926 1.195860902 0.939090978 0.907128259 0.973479722 0.945852392 1 19.24094035 -6.270780485 24.09674724 0.948578859 1.138279223 0.327682498 0.128648102 487.7022082 1258093.893 0.045104189 0.040343043 5.36E-07 6.270780485 0.189700364 RPPS(ph)PEPSTK ddPTM_HeLa_A485_30min_R1 9 RPPSPEPSTK 10 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RPPS(0.733)PEPS(0.103)T(0.164)K;RPPS(1)PEPSTK;RPPS(0.991)PEPS(0.007)T(0.002)K;RPPS(0.991)PEPS(0.007)T(0.002)K;RPPS(0.98)PEPS(0.016)T(0.005)K;RPPS(0.995)PEPS(0.004)T(0.001)K;RPPS(0.992)PEPS(0.004)T(0.004)K;RPPS(0.989)PEPS(0.01)T(0.001)K;RPPS(0.997)PEPS(0.003)TK ;;;;;;;; 94.688 0.0014829 2.93E+11 11316890 12184670 11072460 13022340 15216870 13228670 17138130 17217320 12260160 18913660 TRUE FALSE FALSE 13834293.14 13609561.16 15168623.72 13733717.46 13701824.99 13921302.71 13476428.52 12994745.27 14720661.66 14198832.64 0.974326093 0.958498597 1.068300761 0.967242717 0.964996584 0.980454031 0.949122288 0.915198144 1.036751543 1 23.75926899 RPPS(ph)PEPSTK ddPTM_HeLa_A486_30min_R1 11 RPPSPEPSTK 10 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RPPS(0.925)PEPS(0.034)T(0.041)K;RPPS(0.989)PEPS(0.01)T(0.001)K;RPPS(0.999)PEPS(0.001)TK;RPPS(0.989)PEPS(0.009)T(0.002)K;RPPS(0.879)PEPS(0.091)T(0.03)K;RPPS(0.963)PEPS(0.03)T(0.007)K;RPPS(0.547)PEPS(0.406)T(0.048)K;RPPS(0.987)PEPS(0.011)T(0.003)K;RPPS(0.997)PEPS(0.002)T(0.002)K;RPPS(0.985)PEPS(0.012)T(0.004)K;RPPS(0.999)PEPS(0.001)TK ;;;;;;;;;; 145.81 1.39E-05 3.05E+11 11294800 11920430 8447370 4710033 12370190 12074720 13968120 13962480 9704680 13960140 TRUE FALSE FALSE 10503092.85 10975811.71 11718417.89 10965194.86 10818605.42 10585063.81 10473148.64 10783528.1 10545889.48 10464430.08 1.003694685 1.048868561 1.11983336 1.047853994 1.033845641 1.011527979 1.000833161 1.030493588 1.007784408 1 23.3189904 -5.937661057 2.537117874 1.011724666 1.059529656 0.36957789 0.027544783 0.322054664 4.207674413 0.009965919 0.011298459 1.15E-06 5.937661057 0.047804991 RPPS(ph)PPGPEER ddPTM_HeLa_A485_30min_R1 3 RPPSPPGPEER 11 1 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 RPPS(1)PPGPEER;RPPS(1)PPGPEER;RPPS(1)PPGPEER ;; 97.836 0.00099698 1122860000 349141 453999 469160 412737 459579 386579 403153 358037 449314 518114 TRUE FALSE FALSE 426806.2109 507090.2338 642721.8074 435283.7772 413821.7011 406819.6787 317016.0681 270227.8644 539487.1984 388957.715 1.097307482 1.303715582 1.652420771 1.119103081 1.063924651 1.045922636 0.815039928 0.694748694 1.387007322 1 18.5692538 -5.495390268 6.167900611 0.987340681 1.354117982 0.355000945 0.21032807 0.195572926 25.04870822 0.061557257 0.08829309 3.20E-06 5.495390268 0.366777301 RPPS(ph)PPGPEER ddPTM_HeLa_A486_30min_R1 2 RPPSPPGPEER 11 1 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 RPPS(1)PPGPEER;RPPS(1)PPGPEER ; 79.614 0.0043535 1337510000 229890 254380 264680 71679 265840 220570 218360 241970 249720 241160 TRUE FALSE FALSE 213775.8982 234222.0024 367171.1844 166872.3345 232495.8683 193358.316 163724.0184 186878.7132 271365.9307 180771.9663 1.182572179 1.295676576 2.031129007 0.923109583 1.286127894 1.069625562 0.90569363 1.033781493 1.501150517 1 17.46381144 -5.334601788 24.99999997 1.102237245 1.482428407 0.322074545 0.265655957 168.7060367 57647.00261 0.074789369 0.110930575 4.63E-06 5.334601788 0.380191163 RPPSAFFLFCSEHRPK ddPTM_HeLa_A485_30min_R1 2 RPPSAFFLFCSEHRPK 16 2 D6R9A6;P26583 D6R9A6 HMGB2 High mobility group protein B2 0 0 ; ; 125.52 1.02E-05 157182000 171968 245150 175627 132391 209940 175862 254970 289980 162941 239290 FALSE FALSE TRUE 210221.6883 273818.16 240598.7357 139623.1851 189037.6365 185069.8624 200493.5766 218861.9503 195641.7641 179639.4068 1.17024261 1.524265554 1.339342742 0.777241406 1.052317194 1.030229757 1.116089059 1.21834042 1.08908044 1 17.45474434 -5.089162471 11.22315914 1.052927302 1.368328419 0.522821538 0.132489405 0.50160647 61.28179565 0.036429316 0.063158267 8.14E-06 5.089162471 0.315401117 RPPSAFFLFCSEHRPK ddPTM_HeLa_A486_30min_R1 2 RPPSAFFLFCSEHRPK 16 2 D6R9A6;P26583 D6R9A6 HMGB2 High mobility group protein B2 0 0 ; ; 135.45 1.96E-06 86575000 171675 115737 101333 33286 141528 122122 149150 118368 100067 142668 FALSE FALSE TRUE 159641.469 106565.5786 140571.8514 77491.49018 123776.2385 107055.8293 111831.0925 91418.19036 108740.8881 106943.0042 1.492771502 0.996470778 1.314455793 0.724605511 1.157403792 1.001055002 1.045707415 0.854830955 1.016811609 1 16.70648258 -1.131068778 0.912716337 0.989028416 199.9990157 0.478654223 0.149602058 624.6021482 1.69125332 0.046073103 258511.6278 0.073948816 1.131068778 199.0099873 RPPSAFFLFCSEYRPK ddPTM_HeLa_A485_30min_R1 2 RPPSAFFLFCSEYRPK 16 2 Q5T7C4;P09429 Q5T7C4 HMGB1 High mobility group protein B1 0 0 ; ; 245.97 2.22E-33 1101600000 647680 749830 580050 552190 702420 672770 940470 998380 432500 877330 FALSE FALSE TRUE 791754.1815 837516.0958 794634.6329 582354.7415 632484.5985 707995.1969 739530.9016 753525.7396 519298.7829 658627.7771 1.202126921 1.271607614 1.206500334 0.884194019 0.960306596 1.074954962 1.122835883 1.144084361 0.788455636 1 19.32910383 -5.133743887 6.562212643 1.009870998 1.236897161 0.513025298 0.10245645 0.208056779 10.17395858 0.028756891 0.050396197 7.35E-06 5.133743887 0.227026163 RPPSAFFLFCSEYRPK ddPTM_HeLa_A486_30min_R1 2 RPPSAFFLFCSEYRPK 16 2 Q5T7C4;P09429 Q5T7C4 HMGB1 High mobility group protein B1 0 0 ; ; 225.13 5.72E-25 681310000 295070 200083 171717 115861 219442 206517 279880 238400 183586 288460 FALSE FALSE TRUE 274387.1167 184227.6944 238210.4211 269730.2633 191917.5381 181039.0323 209851.0637 184121.5242 199499.3823 216227.7384 1.268972791 0.852007683 1.10166449 1.247435991 0.887571315 0.837260906 0.970509451 0.851516672 0.922635476 1 17.72219208 -5.791009355 24.99814495 0.903388329 1.097422551 0.427320894 0.115630105 207.920109 175772.3912 0.035360219 0.040100402 1.62E-06 5.791009355 0.194034222 RPPSDLYLPPPDHGAPARGS(ph)PHSEGGKR ddPTM_HeLa_A485_30min_R1 2 RPPSDLYLPPPDHGAPARGSPHSEGGKR 28 3 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 RPPSDLYLPPPDHGAPARGS(0.991)PHS(0.009)EGGKR;RPPSDLYLPPPDHGAPARGS(1)PHSEGGKR ; 161.38 3.85E-14 1069090000 485300 568340 415810 444990 503580 516190 564720 601220 437930 550600 TRUE FALSE FALSE 593253.3107 634802.4191 569635.4223 469298.6769 453441.807 543216.9102 444062.9587 453769.8523 525818.5341 413345.553 1.435247837 1.535766901 1.378109473 1.135366459 1.097004198 1.314195608 1.074314107 1.097797833 1.272104006 1 18.65698884 -5.128146997 3.334442569 1.147715066 1.482510139 0.715286885 0.090476563 0.127874973 2.636028649 0.024585328 0.047048074 7.44E-06 5.128146997 0.334795073 RPPSDLYLPPPDHGAPARGS(ph)PHSEGGKR ddPTM_HeLa_A486_30min_R1 2 RPPSDLYLPPPDHGAPARGSPHSEGGKR 28 3 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 RPPSDLYLPPPDHGAPARGS(0.994)PHS(0.006)EGGKR;RPPSDLYLPPPDHGAPARGS(1)PHSEGGKR ; 144.24 1.97E-09 1022590000 504840 347970 279790 138814 403850 384840 433120 405950 310270 523940 TRUE FALSE FALSE 469453.323 320395.5899 388132.181 323166.0073 353195.3672 337362.3536 324748.7949 313524.0468 337164.4534 392742.0137 1.195322391 0.815791483 0.988262441 0.822845522 0.8993063 0.858992269 0.826875617 0.798295155 0.858488376 1 18.58322241 -4.255742584 24.96508883 0.868785898 1.195322534 0.676235587 0.066535392 340.2593895 1491075.726 0.015789055 0.135577386 5.55E-05 4.255742584 0.326536636 RPPSGFFLFCSEFRPK ddPTM_HeLa_A485_30min_R1 2 RPPSGFFLFCSEFRPK 16 2 E9PES6;E7ES08;E7EQU1;O15347 E9PES6 HMGB3 High mobility group protein B3 0 0 ; ; 202.18 3.34E-18 106716000 97866 113412 96168 101148 115984 108871 145732 151829 72175 137194 FALSE FALSE TRUE 119635.9541 126674.5468 131744.5451 106673.4591 104436.2257 114571.3172 114595.1677 114592.6997 86659.86047 102994.0607 1.161581098 1.229920891 1.279147013 1.035724375 1.01400241 1.112407031 1.112638602 1.11261464 0.841406387 1 16.65220162 -5.544480478 0.368230173 0.974397397 1.288916465 0.449728848 0.087966826 2.552376804 0.537594832 0.096088715 0.329075681 2.85E-06 5.544480478 0.314519068 RPPSGFFLFCSEFRPK ddPTM_HeLa_A486_30min_R1 2 RPPSGFFLFCSEFRPK 16 2 E9PES6;E7ES08;E7EQU1;O15347 E9PES6 HMGB3 High mobility group protein B3 0 0 ; ; 173.28 3.44E-11 82861000 83965 73613 60429 45105 85472 78037 96386 89867 63927 103876 FALSE FALSE TRUE 78079.4871 67779.63779 83828.72714 105006.7195 74751.30477 68409.58836 72269.20333 69406.24588 69468.24383 77864.77348 1.002757519 0.870478841 1.076593733 1.348577987 0.960014412 0.878569157 0.928137335 0.891369008 0.892165234 1 16.24868317 -5.985038427 24.99687486 0.912711724 1.071930562 0.294319486 0.114814557 327.0963601 546489.443 0.038527075 0.043670371 1.04E-06 5.985038427 0.159218837 RPPSPEPSTK ddPTM_HeLa_A486_30min_R1 1 RPPSPEPSTK 10 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 61.435 0.0075787 0 293840 340120 280170 112230 364030 306310 346850 373870 259000 323130 FALSE FALSE TRUE 273243.3334 313167.6525 388659.3272 261277.1118 318369.963 268520.5865 260064.4614 288747.9625 281450.3285 242216.1448 1.128097112 1.292926418 1.604597115 1.07869404 1.314404386 1.108599044 1.07368756 1.192108655 1.161980052 1 17.8859355 -5.971081399 1.44904201 1.117433814 1.315430281 0.265032026 0.141109731 0.57275885 2.476588892 0.05775411 0.066266593 1.07E-06 5.971081399 0.197996467 RPPT(ph)PCS(ph)DPER ddPTM_HeLa_A485_30min_R1 1 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 RPPT(1)PCS(1)DPER 70.529 0.010181 289550000 70114 85821 126550 83015 138850 94405 99158 103760 111650 109040 TRUE FALSE FALSE 85710.61741 95857.01941 173366.1112 87549.89924 125025.6065 99347.89982 77972.08325 78312.69731 134057.1309 81858.33473 1.04706036 1.17101111 2.117879771 1.069529444 1.527341191 1.213656497 0.95252467 0.956685688 1.637672344 1 16.3208417 -6.475407383 7.282128076 1.126010453 1.395751726 0.109052924 0.339675934 0.572723434 76.07046826 0.121454469 0.105661069 3.35E-07 6.475407383 0.269741273 RPPT(ph)PCS(ph)DPER ddPTM_HeLa_A486_30min_R1 1 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 RPPT(1)PCS(1)DPER 63.631 0.017474 122740000 59136 142660 193290 23076 261170 91083 85305 106080 130980 55644 TRUE FALSE FALSE 54990.87178 131355.102 268137.0645 53722.0942 228411.6233 79846.10552 63960.78674 81927.89971 142333.4519 41710.38022 1.318397758 3.149218524 6.428545199 1.287979009 5.476133809 1.914298194 1.5334501 1.964208892 3.412422786 1 15.34811884 RPPT(ph)PCSDPER ddPTM_HeLa_A485_30min_R1 2 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 RPPT(0.939)PCS(0.061)DPER;RPPT(0.718)PCS(0.282)DPER ; 84.753 0.0035581 1618680000 284430 411210 415670 295700 415810 347100 398070 420050 337740 350640 TRUE FALSE FALSE 347700.4722 459297.4324 569443.6305 311853.3422 374410.4964 365273.6193 313019.0926 317032.0789 405521.3201 263231.9011 1.320890328 1.744839553 2.16327743 1.184709532 1.422359885 1.387649513 1.189138138 1.204383198 1.540547777 1 18.00597481 -5.291161886 24.99260565 1.29124559 1.743186311 0.450515831 0.236134399 619.6358589 521028.5367 0.066198851 0.098202954 5.11E-06 5.291161886 0.451940722 RPPT(ph)PCSDPER ddPTM_HeLa_A486_30min_R1 3 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 RPPT(1)PCSDPER;RPPT(0.985)PCS(0.015)DPER;RPPT(0.978)PCS(0.022)DPER ;; 107.14 0.00058134 3552950000 1686020 2092120 1887890 605730 2137490 1650390 1844620 1879150 1619320 1784680 TRUE FALSE FALSE 1567838.705 1926332.792 2618931.567 1410170.052 1869386.073 1446781.662 1383076.566 1451308.567 1759683.961 1337784.512 1.171966554 1.439942513 1.957663244 1.05410852 1.397374582 1.081475865 1.033856016 1.084859747 1.315371755 1 20.35141432 -5.32546132 24.99999903 1.145779226 1.514874399 0.402451586 0.214791338 209.7518563 81905.65518 0.060954474 0.090410109 4.73E-06 5.32546132 0.369095174 RPPTPCS(ph)DPER ddPTM_HeLa_A485_30min_R1 1 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 RPPT(0.38)PCS(0.62)DPER 78.985 0.0035913 0 180790 228840 275280 180820 266310 212880 245280 258900 224000 220960 TRUE FALSE FALSE 221006.1118 255600.8474 377117.5274 190697.7387 239795.2413 224026.0676 192873.9242 195404.3691 268954.7454 165878.7385 1.332335378 1.540889747 2.273453071 1.149621347 1.445605649 1.350541183 1.162740482 1.177995269 1.621393723 1 17.33976945 RPPTPCS(ph)DPER ddPTM_HeLa_A486_30min_R1 1 RPPTPCSDPER 11 1 Q9BW71;Q9BW71-2;Q9BW71-3 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 RPPT(0.314)PCS(0.686)DPER 45.825 0.035565 288330000 425920 596410 459250 167500 536490 485440 525370 501540 473580 514330 TRUE FALSE FALSE 396065.2075 549148.2995 637083.8991 389948.465 469198.4216 425551.3484 393916.8692 387350.2905 514630.2957 385538.4203 1.02730412 1.42436725 1.652452429 1.011438665 1.216995238 1.103784541 1.021731813 1.004699584 1.334835307 1 18.55651511 -5.291151758 24.99889972 1.101152766 1.373674007 0.334373595 0.173834617 760.2715272 639662.6868 0.048933138 0.072590588 5.12E-06 5.291151758 0.272521241 RPQQPNPPSAPLVPGLLDQS(ph)NPLSTPMPK ddPTM_HeLa_A486_30min_R1 2 RPQQPNPPSAPLVPGLLDQSNPLSTPMPK 29 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 RPQQPNPPSAPLVPGLLDQS(1)NPLSTPMPK;RPQQPNPPSAPLVPGLLDQS(0.631)NPLS(0.299)T(0.07)PMPK ; 241.46 2.71E-50 393190000 204218 189390 138442 60079 213662 187392 233910 226340 175750 248470 TRUE FALSE FALSE 189903.3728 174382.0467 192050.45 139866.9482 186862.5196 164273.4803 175383.244 174807.323 190984.1515 186251.4947 1.019607242 0.936271931 1.03113508 0.750957454 1.003280644 0.881998185 0.941647444 0.938555276 1.025410034 1 17.50689248 -7.753471556 22.92186634 1.012705013 0.935188319 0.132615834 0.076233962 108.604959 312456.4726 0.051551054 0.018603363 1.76E-08 7.753471556 -0.077516694 RPQS(ph)PGAS(ph)PSQAER ddPTM_HeLa_A485_30min_R1 2 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 0 RPQS(1)PGAS(0.601)PS(0.399)QAER;RPQS(1)PGAS(0.616)PS(0.384)QAER ; 93.804 0.00050405 1741550000 667810 879630 879530 803370 897680 768230 839500 674420 816770 954460 TRUE FALSE FALSE 816362.0306 982495.0767 1204904.747 847256.0689 808303.8273 808453.3349 660133.9669 509017.4376 980688.2471 716530.6875 1.139325984 1.371183529 1.681581499 1.182442125 1.128079845 1.1282885 0.921291968 0.710391678 1.368661893 1 19.45066897 -5.761194713 1.933666668 1.005968921 1.392818286 0.372093892 0.201678059 0.337154383 2.598250916 0.070522988 0.0921402 1.73E-06 5.761194713 0.386849365 RPQS(ph)PGAS(ph)PSQAER ddPTM_HeLa_A486_30min_R1 2 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 0 RPQS(1)PGAS(0.74)PS(0.26)QAER;RPQS(1)PGAS(0.621)PS(0.379)QAER ; 123.6 1.42E-05 2248160000 726860 888470 762540 254630 887150 751010 728500 720840 723880 764520 TRUE FALSE FALSE 675910.8675 818064.4014 1057815.91 592791.5083 775875.3747 658358.0219 546221.5947 556720.4678 786626.5012 573079.2158 1.179437064 1.427489218 1.84584588 1.034397151 1.353871076 1.14880806 0.95313454 0.971454648 1.372631356 1 19.12837505 -5.298158407 24.98543499 1.122089917 1.478580902 0.400899703 0.20445571 572.387196 389479.1959 0.058590314 0.086905958 5.03E-06 5.298158407 0.356490985 RPQS(ph)PGAS(ph)PSQAERLPSDSER ddPTM_HeLa_A485_30min_R1 1 RPQSPGASPSQAERLPSDSER 21 2 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 0 RPQS(0.993)PGAS(0.867)PS(0.139)QAERLPS(0.001)DSER 80.02 0.011481 309430000 76328 138130 121350 78062 139940 131050 148500 208730 105520 92046 TRUE FALSE FALSE 93306.90027 154283.1019 166242.4148 82326.3294 126007.0822 137911.5754 116771.7619 157538.6402 126696.8961 69100.62618 1.3503047 2.23273088 2.405801857 1.191397733 1.823530252 1.995807896 1.689879938 2.279843888 1.833512996 1 16.07641116 -8.052896543 22.66093419 0.999999998 1.886262366 0.330463257 0.370061779 7053.326954 3021647.809 0.354390398 0.091503207 8.85E-09 8.052896543 0.886262368 RPQS(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RPQSPSPR 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 RPQS(1)PS(1)PR;RPQS(1)PS(1)PR ; 83 0.0030547 958870000 490800 330520 561690 168093 462360 502800 381140 407240 537670 475910 TRUE FALSE FALSE 456397.4545 304328.3915 779191.4106 391328.9989 404366.4975 440769.6481 285774.7407 314520.342 584275.6685 356739.0383 1.279359435 0.853084072 2.184205615 1.096961523 1.133507842 1.235552044 0.801075044 0.881653837 1.637823747 1 18.44450957 RPQS(ph)PSPR ddPTM_HeLa_A485_30min_R1 4 RPQSPSPR 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 RPQS(0.772)PS(0.228)PR;RPQS(0.952)PS(0.048)PR;RPQS(0.983)PS(0.017)PR;RPQS(0.991)PS(0.009)PR ;;; 103.26 0.00098565 1437300000 292667 407017 316475 331767 281683 337199 321473 410098 376445 416293 TRUE FALSE FALSE 357769.7645 454614.0976 433552.2721 349890.5911 253637.6515 354854.2182 252787.6674 309520.8225 451994.0585 312518.8164 1.144794315 1.454677522 1.387283739 1.119582479 0.811591617 1.135465129 0.808871831 0.990406997 1.446293902 1 18.25358353 -5.401589955 4.530334931 1.021273187 1.339036258 0.338762028 0.184160478 0.244120013 7.915096546 0.052743154 0.079407042 3.97E-06 5.401589955 0.317763071 RPQS(ph)PSPR ddPTM_HeLa_A486_30min_R1 4 RPQSPSPR 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 RPQS(0.982)PS(0.018)PR;RPQS(0.981)PS(0.019)PR;RPQS(0.997)PS(0.003)PR;RPQS(0.993)PS(0.007)PR ;;; 121.83 0.0004062 875570000 271279 200295 322002 94752 228059 344108 254404 203943 335506 286327 TRUE FALSE FALSE 252263.743 184422.8947 446689.7979 220587.4445 199453.7137 301655.4536 190749.4284 157509.6309 364587.9302 214628.8555 1.175348684 0.859264214 2.08121968 1.027762292 0.929295892 1.405474827 0.888740836 0.73386978 1.698690185 1 17.71148453 RPQT(ph)PPKIDYLLPGPGPAHS(ph)PQPSKR ddPTM_HeLa_A485_30min_R1 1 RPQTPPKIDYLLPGPGPAHSPQPSKR 26 3 Q8TDM6-4;Q8TDM6;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 2 0 RPQT(1)PPKIDYLLPGPGPAHS(0.93)PQPS(0.07)KR 105.21 0.00025554 571770000 383860 383340 264410 478350 453390 516360 671060 673810 354880 761350 TRUE FALSE FALSE 469248.3327 428168.2784 362226.262 504481.0493 408248.8997 543395.8112 527682.5489 508557.041 426101.1608 571559.4566 0.820996534 0.749122901 0.633750799 0.882639668 0.714271971 0.950724907 0.923232995 0.889771021 0.745506274 1 19.12454406 -6.259054721 24.97463091 0.896294351 0.759325498 0.402944455 0.086101953 232.8600732 2438761.289 0.028888588 0.027600388 5.51E-07 6.259054721 -0.136968853 RPQYS(ph)NPPVQGEVMEGADNQGAGEQGRPVR ddPTM_HeLa_A485_30min_R1 2 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR;RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR ; 251.68 9.33E-52 2556700000 108591 190934 156108 131149 203250 160926 182149 188651 162585 156009 TRUE FALSE FALSE 132746.6933 213262.0704 213858.8454 138313.3378 183013.7163 169351.8365 143231.3781 142384.0465 195214.3182 117118.8274 1.133435983 1.820903394 1.82599886 1.180965869 1.562632758 1.445983026 1.222957754 1.215722951 1.666805606 1 16.83761349 -6.17938913 0.897332915 1.28941265 1.566978828 0.12795259 0.264482964 1.205054682 2.101951651 0.15780301 0.159090977 6.62E-07 6.17938913 0.277566177 RPQYS(ph)NPPVQGEVMEGADNQGAGEQGRPVR ddPTM_HeLa_A486_30min_R1 3 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 0 RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR;RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR;RPQYS(1)NPPVQGEVMEGADNQGAGEQGRPVR ;; 242.44 1.22E-50 1421970000 95271 95637 90712 30554.3 100227 90185 105644 131196 83006 107810 TRUE FALSE FALSE 88592.99488 88058.37582 125838.1158 71131.95453 87655.59508 79058.89163 79210.75381 101325.5348 90201.02691 80813.67427 1.096262429 1.089646976 1.557138899 0.880197011 1.08466291 0.978286068 0.980165232 1.253816705 1.116160448 1 16.30231181 -5.305766978 24.99999222 1.049033221 1.231880787 0.273927061 0.152573119 651.7004923 367546.2692 0.043632134 0.064717135 4.95E-06 5.305766978 0.182847566 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR ddPTM_HeLa_A485_30min_R1 2 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 0 ; ; 178.02 5.68E-33 44876000 10755.8 15573.7 17449 9629.1 17575.5 15652.3 15503.5 18775.1 14457.8 14271.6 FALSE FALSE TRUE 13148.3906 17394.90874 23904.11121 10155.11335 15825.62151 16471.83022 12191.05057 14170.47729 17359.34785 10713.95277 1.227221259 1.623575268 2.231119712 0.947840033 1.477103908 1.537418596 1.137866746 1.32261898 1.620256148 1 13.38720322 -5.279310656 24.99972928 1.31684676 1.68693252 0.261424172 0.307653229 1174.029994 1642321.706 0.08642628 0.128499036 5.26E-06 5.279310656 0.37008576 RPRDS(ph)PTLSNSGIR ddPTM_HeLa_A485_30min_R1 1 RPRDSPTLSNSGIR 14 2 Q9HD20-3;Q9HD20-2;Q9HD20 Q9HD20-3 ATP13A1 Manganese-transporting ATPase 13A1 1 0 RPRDS(1)PTLSNSGIR 114.96 0.0002885 0 32140 35262 32185 36011 37332 37366 40547 48744 27895 62139 TRUE FALSE FALSE 39289.43212 39385.58416 44091.57083 37978.18975 33615.095 39322.42598 31883.80221 36789.45757 33493.27063 46648.89088 0.842237219 0.844298405 0.945179403 0.814128461 0.720597947 0.8429445 0.683484679 0.788645922 0.71798643 1 15.50955516 -5.513554714 23.90959903 0.777762719 0.87489596 0.147220327 0.087423366 377.8351401 968882.7719 0.023535278 0.03219205 3.07E-06 5.513554714 0.097133241 RPRPPNAPS(ph)QDGK ddPTM_HeLa_A486_30min_R1 1 RPRPPNAPSQDGK 13 2 P16989-2;P16989 P16989-2 YBX3 Y-box-binding protein 3 1 0 RPRPPNAPS(1)QDGK 50.653 0.037385 51752000 56047 55854 27512 29705 48242 63200 71805 71740 46818 83571 TRUE FALSE FALSE 52118.39473 51427.92562 38165.3832 69154.74121 42191.03852 55403.02657 53838.62952 55406.36807 50876.22194 62644.27764 0.831973752 0.82095169 0.609239736 1.103927506 0.673501876 0.884406823 0.859434118 0.884460164 0.812144762 1 15.93489511 -14 0.142090457 1.584336334 0.773023789 0.15204675 0.123927419 258.6260163 2.234468455 42.72598983 0.697653354 1.00E-14 14 -0.811312544 RPS(ph)ASSPNNNTAAK ddPTM_HeLa_A485_30min_R1 2 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 RPS(0.333)AS(0.333)S(0.333)PNNNTAAK;RPS(0.499)AS(0.322)S(0.178)PNNNTAAK ; 112.16 0.00014008 688170000 206350 258191 234066 215827 332630 263327 329692 462600 276245 385460 TRUE FALSE FALSE 252251.8456 288384.1915 320656.7537 227617.0825 299512.1893 277114.3945 259250.6109 349146.6247 331684.8376 289371.9159 0.871721932 0.996586661 1.108112903 0.786590094 1.035042355 0.957640944 0.895907988 1.20656707 1.146223318 1 18.14256539 -7.258518688 24.99994882 1.132296398 0.955337752 0.382533043 0.096753069 248.7689233 2129385.1 0.046412862 0.025295451 5.51E-08 7.258518688 -0.176958646 RPS(ph)ASSPNNNTAAK ddPTM_HeLa_A486_30min_R1 3 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 RPS(0.697)AS(0.246)S(0.057)PNNNTAAK;RPS(0.333)AS(0.333)S(0.333)PNNNTAAK;RPS(0.392)AS(0.392)S(0.215)PNNNTAAK ;; 136.39 5.36E-06 764750000 529600 512390 351779 202972 513350 503750 593670 548630 376497 570640 TRUE FALSE FALSE 492477.7749 471786.3503 487997.2498 472529.0736 448960.8562 441602.4468 445127.4868 423718.9255 409132.0631 427748.0298 1.151326811 1.102953883 1.140852127 1.10469024 1.049591874 1.032389201 1.040630128 0.99058066 0.956479129 1 18.70640168 -6.130325535 0.686218865 0.979278294 1.142292272 0.894620904 0.020274771 0.228740146 0.238980804 0.01499896 0.017736896 7.41E-07 6.130325535 0.163013978 RPS(ph)EGNEPSTK ddPTM_HeLa_A486_30min_R1 1 RPSEGNEPSTK 11 1 F2Z329;A0A087WWU1;Q96Q45-2;Q96Q45;Q96Q45-5;Q96Q45-3 F2Z329 TMEM237 Transmembrane protein 237 1 0 RPS(1)EGNEPSTK 78.326 0.0048395 272760000 282930 245940 189120 76968 289450 249760 258460 231380 261280 360500 TRUE FALSE FALSE 263098.0681 226450.8187 262352.3288 179185.3937 253144.482 218947.1506 193790.5743 178699.825 283927.9608 270228.4535 0.973613491 0.837997686 0.970853829 0.663088551 0.936779524 0.810229817 0.717136082 0.661291669 1.050696021 1 18.04382006 -5.163484944 21.8779149 0.818294975 0.918538893 0.086288707 0.131286908 37.22915145 8304.924793 0.034259076 0.059338478 6.86E-06 5.163484944 0.100243917 RPS(ph)EGPQPLVR ddPTM_HeLa_A485_30min_R1 1 RPSEGPQPLVR 11 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 RPS(1)EGPQPLVR 84.946 0.0023421 160410000 58440 79516 82886 51720 96015 77826 86425 95958 66313 81270 TRUE FALSE FALSE 71439.77638 88814.7045 113548.9806 54545.33264 86455.40947 81900.84902 67959.59272 72424.15004 79621.41084 61010.88466 1.170934937 1.455719008 1.861126604 0.894026253 1.41704894 1.342397336 1.113892924 1.187069331 1.305036163 1 15.89677903 -7.267723863 0.258219264 0.972228089 1.480607844 0.16825741 0.235555171 3.446021143 0.913848508 0.595155969 0.664257461 5.40E-08 7.267723863 0.508379754 RPS(ph)EGPQPLVR ddPTM_HeLa_A486_30min_R1 2 RPSEGPQPLVR 11 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 RPS(1)EGPQPLVR;RPS(1)EGPQPLVR ; 83.061 0.003053 539460000 141996 146433 131031 37698 146255 115482 132690 142799 120888 141428 TRUE FALSE FALSE 132042.8137 134829.1158 181769.7123 87762.84915 127910.3341 101235.005 99489.55855 110286.785 131366.6692 106013.5083 1.245528196 1.271810715 1.714590106 0.827845909 1.206547507 0.954925524 0.938461147 1.040308795 1.239150287 1 16.69388858 -5.272657801 24.99999565 1.031748358 1.396759793 0.52954652 0.164417607 563.8581249 1256543.767 0.045607405 0.068351072 5.34E-06 5.272657801 0.365011435 RPS(ph)ES(ph)DKEDELDKVK ddPTM_HeLa_A485_30min_R1 3 RPSESDKEDELDKVK 15 3 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 2 0 RPS(1)ES(1)DKEDELDKVK;RPS(1)ES(1)DKEDELDKVK;RPS(1)ES(1)DKEDELDKVK ;; 114.46 9.80E-05 1522060000 622140 353110 132555 1988930 530461 484201 1116130 778020 337702 2843010 TRUE FALSE FALSE 760532.8966 394403.1429 181592.6106 2097580.21 477646.4403 509553.0156 877659.7076 587209.3751 405475.6938 2134299.929 0.356338341 0.184792745 0.085082986 0.982795427 0.223795369 0.238744803 0.411216669 0.275129736 0.189980653 1 21.0253315 -10.20378482 4.372196882 1.000218851 0.330740821 0.422236189 0.235958054 120574945.2 70349527.96 239757.0311 0.057243993 6.25E-11 10.20378482 -0.66947803 RPS(ph)ES(ph)DKEDELDKVK ddPTM_HeLa_A486_30min_R1 3 RPSESDKEDELDKVK 15 3 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 2 0 RPS(1)ES(1)DKEDELDKVK;RPS(1)ES(1)DKEDELDKVK;RPS(1)ES(1)DKEDELDKVK ;; 78.088 0.003294 1050930000 408500 312951 85222 664170 234682 520970 882490 673760 241936 1489580 TRUE FALSE FALSE 379866.2595 288151.623 118222.2407 1546221.325 205245.9952 456698.0182 661681.668 520359.5561 262907.2073 1116579.472 0.340205305 0.258066381 0.105878931 1.384783944 0.183816737 0.409015238 0.59259702 0.466030022 0.235457676 1 20.09065451 -10.61875862 2.642821561 1.053946218 0.450815939 0.191576828 0.343571435 38886219.8 35100776.82 14433644.35 0.088450105 2.41E-11 10.61875862 -0.603130279 RPS(ph)ESDKEDELDKVK ddPTM_HeLa_A485_30min_R1 4 RPSESDKEDELDKVK 15 3 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 RPS(1)ESDKEDELDKVK;RPS(0.972)ES(0.028)DKEDELDKVK;RPS(0.929)ES(0.071)DKEDELDKVK;RPS(0.995)ES(0.005)DKEDELDKVK ;;; 165.3 3.16E-11 10351550000 2907400 1422860 740525 8652190 2295850 2073580 5423980 4392110 1560830 10702500 TRUE FALSE FALSE 3554141.1 1589251.1 1014476.013 9124837.231 2067267.113 2182149.442 4265102.363 3314938.136 1874074.264 8034563.715 0.442356452 0.197801792 0.126263983 1.135697912 0.257296748 0.271595263 0.530844302 0.412584709 0.233251528 1 22.93778826 -11.03197419 2.618037147 1.722058375 0.404563611 0.303565708 0.272197335 68492813.45 23392654.58 296887666.9 0.071694942 9.29E-12 11.03197419 -1.317494765 RPS(ph)ESDKEDELDKVK ddPTM_HeLa_A486_30min_R1 2 RPSESDKEDELDKVK 15 3 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 RPS(0.796)ES(0.204)DKEDELDKVK;RPS(0.995)ES(0.005)DKEDELDKVK ; 129.32 1.97E-05 5420490000 877890 749030 209297 1075910 518210 1202000 1834100 1534480 489310 2486770 TRUE FALSE FALSE 816354.4444 689674.1349 290342.4036 2504772.853 453211.2697 1053709.461 1375188.781 1185112.401 531723.7848 1864066.606 0.437942744 0.369983633 0.155757526 1.343714246 0.243130405 0.565274576 0.73773586 0.635767197 0.285249348 1 20.83002198 -11.57231339 2.139570353 8.706772758 0.540442066 0.160247169 0.321704304 10863258.02 401368.6102 409160411 0.087320193 2.68E-12 11.57231339 -8.166330691 RPS(ph)FSSHHLMPCDTLAR ddPTM_HeLa_A485_30min_R1 1 RPSFSSHHLMPCDTLAR 17 1 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RPS(0.577)FS(0.197)S(0.226)HHLMPCDTLAR 63.883 0.013992 453740000 135800 131360 128520 158050 178220 129610 196520 188680 114180 250480 TRUE FALSE FALSE 166008.2415 146721.4093 176064.8962 166683.8713 160475.791 136396.1792 154531.8966 142405.9342 137094.8787 188039.9457 0.882834979 0.780267239 0.936316459 0.886427991 0.853413302 0.725357469 0.821803559 0.75731746 0.729073167 1 17.52067964 -6.025603649 22.55024476 0.79214145 0.86962283 0.113517426 0.08162406 378.9747577 333778.8299 0.025418476 0.02555353 9.43E-07 6.025603649 0.07748138 RPS(ph)FSSHHLMPCDTLAR ddPTM_HeLa_A486_30min_R1 1 RPSFSSHHLMPCDTLAR 17 1 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RPS(0.95)FS(0.042)S(0.008)HHLMPCDTLAR 88.627 0.00081839 359730000 131440 121490 93007 51110 126210 132590 156900 152280 104190 168000 TRUE FALSE FALSE 122226.7348 111862.6899 129021.8012 118986.663 110379.5649 116232.3939 117641.9605 117609.1682 113221.2731 125931.7065 0.970579516 0.888280585 1.024537861 0.944850715 0.876503368 0.922979582 0.934172686 0.933912289 0.899068838 1 16.94228204 -3.899276797 19.09429841 0.934374522 4.005844913 0.05132039 0.04404111 983.8087308 191318.5226 0.010469522 3389.739221 0.000126102 3.899276797 3.071470391 RPS(ph)GRSPTSTEK ddPTM_HeLa_A486_30min_R1 2 RPSGRSPTSTEK 12 2 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.6)GRS(0.381)PT(0.001)S(0.015)T(0.004)EK;RPS(0.591)GRS(0.403)PT(0.003)S(0.002)T(0.001)EK ; 89.624 0.0015728 218455000 133841 115303 133155 93885 245004 183209 252557 257881 123394 187442 TRUE FALSE FALSE 124459.4371 106165.9704 184716.182 218569.0247 214273.3137 160606.5363 189364.5673 199167.1258 134089.8913 140505.3032 0.885798858 0.755601162 1.3146563 1.555592706 1.525019404 1.143063875 1.347739644 1.417506111 0.954340429 1 17.10026506 -4.76593942 24.99692537 1.312952808 0.820699932 0.467337338 0.194902823 80.31799855 446162.2765 0.050581562 0.111308045 1.71E-05 4.76593942 -0.492252875 RPS(ph)LPPSK ddPTM_HeLa_A486_30min_R1 1 RPSLPPSK 8 1 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;A0A087WTC9;H0YJ87 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 RPS(1)LPPSK 81.92 0.0046967 0 101260 103700 79262 44095 109960 113130 142440 135550 96614 134730 TRUE FALSE FALSE 94162.19691 95482.43433 109954.3691 102655.3884 96167.79146 99173.17082 106800.0054 104688.224 104988.5793 100992.7311 0.932366081 0.94543868 1.088735476 1.016463139 0.952224883 0.981983255 1.057501904 1.036591673 1.039565702 1 16.62389193 -6.750770101 24.99771763 1.036464127 0.988840754 0.217302212 0.04357142 358.7375202 840508.79 0.018040994 0.013828285 1.78E-07 6.750770101 -0.047623373 RPS(ph)PAEK ddPTM_HeLa_A485_30min_R1 3 RPSPAEK 7 1 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 RPS(1)PAEK;RPS(1)PAEK;RPS(1)PAEK ;; 79.201 0.0078619 1004380000 1457680 722540 305253 2147970 343122 1690640 649610 979200 888160 1744180 TRUE FALSE FALSE 1781935.887 807034.7677 418178.7873 2265308.162 308959.5689 1779159.296 510815.5167 739049.6647 1066405.565 1309388.025 1.360892152 0.616345004 0.319369644 1.730051076 0.235957228 1.358771626 0.390117755 0.564423723 0.814430516 1 20.32046126 RPS(ph)PAEK ddPTM_HeLa_A486_30min_R1 2 RPSPAEK 7 1 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 RPS(1)PAEK;RPS(1)PAEK ; 79.201 0.0078619 274870000 314710 124618 373510 183312 129543 1039260 232440 256680 603840 529330 TRUE FALSE FALSE 292650.4542 114742.8158 518143.0749 426759.6001 113294.509 911046.6676 174281.0535 198239.5673 656181.3374 396782.3226 0.737559204 0.289183286 1.305862296 1.07555094 0.285533156 2.296086836 0.439235933 0.499617942 1.65375648 1 18.59798823 -4.759046203 24.99998815 1.045105559 0.51337122 0.127660322 0.578659799 128.2063031 1339208.686 0.14526875 0.348805178 1.74E-05 4.759046203 -0.531734339 RPS(ph)PFLK ddPTM_HeLa_A486_30min_R1 1 RPSPFLK 7 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 RPS(1)PFLK 96.342 0.0031588 215270000 231160 279130 224840 114020 367340 257570 293300 279870 250000 344300 TRUE FALSE FALSE 214956.8777 257010.7222 311904.0694 265444.3223 321264.7919 225793.6322 219913.2378 216149.7105 271670.2013 258085.039 0.832891665 0.995837354 1.208532159 1.028514955 1.244802074 0.874880749 0.852096033 0.837513524 1.052638318 1 17.97748699 -6.321098064 24.9992219 0.908812117 1.064702124 0.236884062 0.123030025 351.636439 147347.7245 0.04413695 0.038925141 4.77E-07 6.321098064 0.155890006 RPS(ph)PGEMR ddPTM_HeLa_A485_30min_R1 5 RPSPGEMR 8 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 RPS(1)PGEMR;RPS(1)PGEMR;RPS(1)PGEMR;RPS(1)PGEMR;RPS(1)PGEMR ;;;; 120.03 0.00045391 3555470000 507563 643077 865457 628257 815778 623215 704317 635870 747127 881692 TRUE FALSE FALSE 620468.6383 718279.2611 1185625.559 662577.0891 734556.2779 655845.5737 553833.9192 479921.8855 897068.5358 661902.4107 0.937401992 1.085173961 1.791239222 1.001019302 1.109765225 0.99084935 0.836730476 0.725064417 1.355288214 1 19.336259 -5.471018033 24.99977333 0.98711337 1.276573208 0.185420548 0.256634521 550.7679041 265500.3339 0.073360356 0.108809746 3.38E-06 5.471018033 0.289459838 RPS(ph)PGEMR ddPTM_HeLa_A486_30min_R1 5 RPSPGEMR 8 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 RPS(1)PGEMR;RPS(1)PGEMR;RPS(1)PGEMR;RPS(1)PGEMR;RPS(1)PGEMR ;;;; 101.72 0.0011407 4113930000 457388 671092 728035 205975 845753 599619 640982 682228 625209 544461 TRUE FALSE FALSE 425327.4632 617912.2258 1009949.649 479520.2094 739670.7724 525644.1043 480601.524 526899.5773 679402.6195 408124.4218 1.042151463 1.514029038 2.474612142 1.174936328 1.812365869 1.287950625 1.177585801 1.291026827 1.664694841 1 18.63864952 -6.284909224 23.08621098 1.295774056 1.623214545 0.140130982 0.393548259 631.4831689 621157.4019 0.139324873 0.122978274 5.19E-07 6.284909224 0.327440489 RPS(ph)PHDEEEFEVEEAAEAQAEPK ddPTM_HeLa_A485_30min_R1 1 RPSPHDEEEFEVEEAAEAQAEPK 23 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 RPS(1)PHDEEEFEVEEAAEAQAEPK 73.865 0.00014736 0 52691 75217 68136 69601 80829 65196 92906 94037 57495 80755 TRUE FALSE FALSE 64411.93117 84012.97385 93342.34178 73403.12639 72781.38095 68609.56175 73055.87413 70974.27831 69033.71912 60624.26469 1.062477731 1.38579782 1.539686168 1.210787904 1.200532185 1.131717838 1.205059962 1.170723945 1.138714333 1 15.88760772 -5.506422766 23.56596051 1.157230241 1.341679764 0.315845644 0.122133781 408.181999 584540.9129 0.034805285 0.050014293 3.12E-06 5.506422766 0.184449523 RPS(ph)PHDEEEFEVEEAAEAQAEPK ddPTM_HeLa_A486_30min_R1 1 RPSPHDEEEFEVEEAAEAQAEPK 23 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 RPS(1)PHDEEEFEVEEAAEAQAEPK 166.39 1.37E-14 678310000 98484 110720 78746 56855 112580 118660 115040 142330 89787 167730 TRUE FALSE FALSE 91580.78017 101946.144 109238.5601 132361.3133 98459.16663 104020.9356 86255.77523 109924.566 97569.80945 125729.3163 0.728396391 0.810838291 0.868839212 1.052748215 0.783104288 0.827340343 0.686043461 0.874295425 0.776030701 1 16.93996156 RPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_HeLa_A485_30min_R1 4 RPSPPEPWDEEDGASCSTFFGSEER 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER ;;; 165.1 4.56E-14 537110000 90442 90914 128789 120446 141804 86195 121072 95909 120161 147143 TRUE FALSE FALSE 110560.5109 101545.6015 176433.4105 127025.66 127685.4959 90708.03692 95203.97813 72387.16737 144276.2105 110462.9581 1.000883127 0.919272879 1.597217869 1.149938968 1.155912336 0.821162483 0.861863378 0.65530716 1.306104897 1 16.75320314 -6.225891225 9.726008511 0.903198864 1.174454344 0.207426016 0.22726812 0.80965737 217.0145679 0.075907494 0.075534497 5.94E-07 6.225891225 0.27125548 RPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_HeLa_A486_30min_R1 3 RPSPPEPWDEEDGASCSTFFGSEER 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER ;; 207.23 7.72E-29 552890000 60529 115922 87958 38782.2 118891 90447 85790 104463 86563 77406 TRUE FALSE FALSE 56286.22967 106735.9185 122017.6932 90286.92154 103978.5822 79288.56874 64324.43461 80679.05531 94066.35054 58023.03377 0.970066989 1.839543912 2.102918191 1.5560531 1.792022502 1.366501604 1.108601713 1.390465994 1.6211898 1 15.82433811 -6.357163841 5.527495173 1.304024073 1.681406829 0.242480399 0.312525093 0.342455079 15.8280269 0.112734473 0.099070626 4.39E-07 6.357163841 0.377382757 RPS(ph)PPPQPS(ph)SVK ddPTM_HeLa_A485_30min_R1 1 RPSPPPQPSSVK 12 1 H3BLZ3;Q8IX03-2;H0YAU4 H3BLZ3 WWC1 Protein KIBRA 2 0 RPS(0.995)PPPQPS(0.995)S(0.01)VK 57.59 0.016699 520790000 366530 343410 262720 514620 472840 372550 535380 517330 348010 684740 TRUE FALSE FALSE 448063.334 383568.8122 359911.0607 542732.3875 425762.3894 392056.1419 420991.6893 390454.0064 417852.4149 514046.9197 0.871638982 0.746174712 0.700152159 1.055803209 0.828255891 0.762685519 0.81897522 0.759568809 0.81286824 1 18.97154052 -11.43046983 2.092714337 2.465722794 0.81588187 0.260693558 0.092247678 4123583.757 332126.3692 28673443.94 0.023527042 3.71E-12 11.43046983 -1.649840924 RPS(ph)PPPQPS(ph)SVK ddPTM_HeLa_A486_30min_R1 1 RPSPPPQPSSVK 12 1 H3BLZ3;Q8IX03-2;H0YAU4 H3BLZ3 WWC1 Protein KIBRA 2 0 RPS(0.993)PPPQPS(0.993)S(0.014)VK 58.098 0.016171 199410000 373250 394720 218130 162850 367350 444900 521730 459110 298750 515550 TRUE FALSE FALSE 347087.1025 363440.9497 302595.7777 379123.03 321273.5376 390012.7614 391187.6357 354580.6753 324645.8905 386452.9243 0.898135531 0.940453356 0.78300812 0.981032892 0.831339388 1.009211567 1.012251716 0.91752618 0.840065814 1 18.55993316 -6.26297999 24.99894369 0.954183981 0.88924457 0.196129415 0.069736244 259.6814439 4213721.665 0.024007448 0.022319725 5.46E-07 6.26297999 -0.064939411 RPS(ph)PQPS(ph)PR ddPTM_HeLa_A485_30min_R1 3 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RPS(1)PQPS(1)PR;RPS(1)PQPS(1)PR;RPS(1)PQPS(1)PR ;; 62.891 0.011481 1023975000 1204746 1541941 1704253 1828001 2105791 1373733 1708327 1628770 1435719 2230850 TRUE FALSE FALSE 1472737.591 1722257.587 2334727.105 1927860.066 1896131.054 1445659.536 1343328.981 1229311.604 1723854.634 1674740.151 0.879382745 1.02837302 1.394083198 1.151139814 1.132194181 0.863214234 0.802111886 0.734031248 1.029326629 1 20.67550584 -6.261738892 23.14219923 0.863887182 1.129395282 0.383626686 0.14485449 9.647521654 745381.2565 0.051653767 0.048423962 5.47E-07 6.261738892 0.2655081 RPS(ph)PQPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RPS(1)PQPS(1)PR;RPS(1)PQPS(1)PR ; 63.181 0.011219 1093463000 722690 842000 749580 294441 929560 864370 853110 879270 767980 846480 TRUE FALSE FALSE 672033.163 775276.8535 1039837.45 685473.5282 812965.917 757732.8177 639652.8547 679079.4153 834549.1247 634515.8983 1.059127383 1.221839918 1.638788647 1.080309461 1.281238057 1.194190437 1.008095867 1.07023231 1.315253293 1 19.27529679 -6.536605707 6.750351266 1.103257972 1.263372399 0.162401983 0.168520014 0.290401179 60.53811511 0.064691704 0.051324253 2.91E-07 6.536605707 0.160114428 RPS(ph)PQPSPR ddPTM_HeLa_A485_30min_R1 1 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RPS(0.551)PQPS(0.449)PR 71.085 0.038035 169710000 161020 209300 249150 214950 257330 194050 213040 227610 224980 304400 TRUE FALSE FALSE 196838.3435 233775.8143 341320.953 226692.1742 231709.3217 204210.1579 167522.2636 171788.2906 270131.4224 228518.6821 0.861366527 1.023005262 1.493623847 0.992007184 1.01396227 0.893625659 0.733079073 0.751747249 1.182097761 1 17.80195259 -5.891078563 2.264771862 0.889035482 1.121411753 0.158909257 0.192530913 0.488929605 5.114133108 0.068948535 0.080938911 1.29E-06 5.891078563 0.232376271 RPS(ph)PQPSPR ddPTM_HeLa_A486_30min_R1 4 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RPS(0.937)PQPS(0.063)PR;RPS(0.993)PQPS(0.007)PR;RPS(1)PQPSPR;RPS(1)PQPSPR ;;; 87.216 0.0023603 1995550000 1138330 1212100 907130 565179 1295890 1144850 1428530 1496020 934240 1887000 TRUE FALSE FALSE 1058538.945 1116048.782 1258395.03 1315765.275 1133347.393 1003610.047 1071096.685 1155408.904 1015220.675 1414482.918 0.748357532 0.789015383 0.889650214 0.930209378 0.801245019 0.709524332 0.757235504 0.816841893 0.717732722 1 20.43184332 -4.522411082 24.91600156 0.818701294 0.758521963 0.068683754 0.087544744 44.54181296 2372865.074 0.022845761 0.062032811 3.00E-05 4.522411082 -0.060179331 RPS(ph)PSRTPEER ddPTM_HeLa_A486_30min_R1 1 RPSPSRTPEER 11 2 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59;E9PJG2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 RPS(0.973)PS(0.025)RT(0.003)PEER 80.441 0.0048729 69493000 65997 67643 72368 43728 121910 75730 97045 107510 60108 97153 TRUE FALSE FALSE 61370.95111 62282.72233 100390.8277 101800.9939 106618.911 66387.20257 72763.31456 83032.31993 65318.20984 72825.25644 0.842715208 0.855235194 1.378516638 1.397880335 1.464037564 0.911595864 0.999149445 1.140158291 0.89691699 1 16.15215126 -6.329539112 24.99992035 0.998923066 1.191495366 0.186935766 0.206046072 369.1612769 135520.3113 0.081488518 0.071866122 4.68E-07 6.329539112 0.1925723 RPS(ph)PTSGDSRPAAGR ddPTM_HeLa_A485_30min_R1 4 RPSPTSGDSRPAAGR 15 2 Q8N1G1 Q8N1G1 REXO1 RNA exonuclease 1 homolog 1 0 RPS(0.927)PT(0.056)S(0.017)GDSRPAAGR;RPS(0.914)PT(0.043)S(0.043)GDSRPAAGR;RPS(0.935)PT(0.051)S(0.014)GDSRPAAGR;RPS(0.928)PT(0.056)S(0.014)GDS(0.002)RPAAGR ;;; 115.66 0.00010452 2123690000 217784 322158 335057 207338 357683 297500 336294 317851 298154 293661 TRUE FALSE FALSE 266229.2995 359831.5757 459008.5272 218664.3499 322070.8246 313076.64 264442.0396 239897.5439 357990.773 220456.7171 1.207626163 1.632209625 2.082080025 0.991869755 1.460925432 1.42012747 1.199519085 1.088184325 1.623859675 1 17.75013591 -5.277900305 24.99939958 1.271758915 1.639795779 0.291283328 0.274831747 1039.694731 1578994.15 0.076653968 0.114068388 5.27E-06 5.277900305 0.368036864 RPS(ph)PTSGDSRPAAGR ddPTM_HeLa_A486_30min_R1 2 RPSPTSGDSRPAAGR 15 2 Q8N1G1 Q8N1G1 REXO1 RNA exonuclease 1 homolog 1 0 RPS(0.906)PT(0.057)S(0.037)GDSRPAAGR;RPS(0.909)PT(0.049)S(0.036)GDS(0.006)RPAAGR ; 91.401 0.00079327 740980000 80048 87042 80085 26991 90212 66936 77740 77201 70387 73673 TRUE FALSE FALSE 74437.04857 80144.47492 111096.0568 62836.41205 78896.76977 58678.11688 58288.62975 59624.01759 76488.20183 55224.80127 1.347891651 1.451240622 2.011705868 1.137829573 1.428647418 1.06253197 1.055479212 1.079660157 1.385033537 1 15.7530287 -5.32037368 24.99994963 1.169744093 1.588377129 0.483794653 0.207779987 220.2381534 93424.54748 0.058836475 0.087268621 4.78E-06 5.32037368 0.418633035 RPS(ph)QEQSASASSGQPQAPLNR ddPTM_HeLa_A485_30min_R1 6 RPSQEQSASASSGQPQAPLNR 21 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(0.988)QEQS(0.012)ASASSGQPQAPLNR;RPS(0.974)QEQS(0.022)ASASS(0.003)GQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR ;;;;; 276.52 7.64E-73 7867330000 601040 865040 878190 645470 1034370 786453 880270 903060 782447 902500 TRUE FALSE FALSE 734739.2744 966198.9032 1203069.026 680730.3917 931384.4909 827630.463 692193.1234 681583.1191 939476.9359 677523.3593 1.084448624 1.426074673 1.775686416 1.004733464 1.374689859 1.221552662 1.021652042 1.005992059 1.386634015 1 19.36991116 -6.044837743 1.191682839 1.110931315 1.385519883 0.181152304 0.22168772 0.773948389 2.298969022 0.103620235 0.113942708 9.02E-07 6.044837743 0.274588568 RPS(ph)QEQSASASSGQPQAPLNR ddPTM_HeLa_A486_30min_R1 4 RPSQEQSASASSGQPQAPLNR 21 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR ;;; 322.6 1.02E-102 6874220000 882750 999680 841720 275083 1107230 871900 970450 980320 811670 947760 TRUE FALSE FALSE 820873.7835 920461.716 1167656.526 640407.1259 968350.8889 764333.8428 727633.1456 757122.5362 882026.2091 710434.7271 1.155452784 1.295631648 1.643580306 0.901429929 1.363039913 1.075867794 1.024208302 1.06571724 1.241530257 1 19.43834258 -5.273027822 24.99473311 1.10600891 1.357962605 0.35597344 0.16529295 832.9468066 1796553.553 0.045891579 0.068724645 5.33E-06 5.273027822 0.251953696 RPS(ph)QGPPAR ddPTM_HeLa_A485_30min_R1 6 RPSQGPPAR 9 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR ;;;;; 138.45 9.09E-05 2238453000 413992 534625 528358 402496 549772 474606 578609 633877 513707 569675 TRUE FALSE FALSE 506083.0921 597144.7431 723819.611 424483.3373 495034.7693 499455.6363 454984.4603 478417.6719 616803.2829 427665.5066 1.18336196 1.396289235 1.692490042 0.99255921 1.157527932 1.167865139 1.063879255 1.118672571 1.442256327 1 18.70612333 -5.277954563 24.96860093 1.139009428 1.421271331 0.393530841 0.16454432 805.6807304 1218072.471 0.046302043 0.068886021 5.27E-06 5.277954563 0.282261902 RPS(ph)QGPPAR ddPTM_HeLa_A486_30min_R1 3 RPSQGPPAR 9 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RPS(1)QGPPAR;RPS(1)QGPPAR;RPS(1)QGPPAR ;; 146.36 5.51E-05 449209000 171978 172779 143735 54678.8 175008 188926 169533 161581 142373 163420 TRUE FALSE FALSE 159923.2303 159087.3628 199393.0414 127295.0097 153056.8648 165618.231 127114.0503 124792.5336 154714.0063 122498.5683 1.305511015 1.298687527 1.62771732 1.039155081 1.249458397 1.35200136 1.037677844 1.018726466 1.262986241 1 16.90240536 -6.214812621 0.576867 1.060167466 1.387202353 0.324941272 0.154745675 1.097740184 0.79433984 0.129852742 0.158238776 6.10E-07 6.214812621 0.327034887 RPS(ph)QGPPARS(ph)PSQDFSFIEDTEILDSAMYR ddPTM_HeLa_A485_30min_R1 1 RPSQGPPARSPSQDFSFIEDTEILDSAMYR 30 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 RPS(0.973)QGPPARS(0.798)PS(0.143)QDFS(0.085)FIEDTEILDSAMYR 137.04 7.03E-07 17781000 7010.8 10358 9867.6 3809.2 12207 10781 12154 14898 9709.6 11084 TRUE FALSE FALSE 8570.328273 11569.278 13518.03587 4017.286951 10991.62822 11345.47649 9557.198611 11244.24214 11658.22766 8320.962786 1.029968345 1.390377327 1.624575931 0.482791121 1.320956301 1.36348122 1.148568844 1.351315038 1.401067155 1 13.02253475 -7.254368171 23.80055675 1.282143317 1.202474593 0.003615712 0.300429531 1910.244718 6429626.711 0.146266496 0.081863358 5.57E-08 7.254368171 -0.079668724 RPS(ph)QGPPARSPSQDFSFIEDTEILDSAMYR ddPTM_HeLa_A485_30min_R1 3 RPSQGPPARSPSQDFSFIEDTEILDSAMYR 30 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RPS(0.605)QGPPARS(0.393)PS(0.002)QDFSFIEDTEILDSAMYR;RPS(0.25)QGPPARS(0.25)PS(0.25)QDFS(0.25)FIEDTEILDSAMYR;RPS(0.495)QGPPARS(0.495)PS(0.009)QDFSFIEDTEILDSAMYR ;; 244.22 1.00E-50 167474000 34932.2 67347.4 65462.5 33908.3 86365 80573 92606.9 152710 59812.6 59434.9 TRUE FALSE FALSE 42702.74738 75223.09259 89679.80287 35760.62457 77766.19735 84791.67769 72820.67929 115257.6331 71816.44019 44618.87325 0.957055709 1.685903007 2.009907385 0.801468571 1.742899175 1.900354525 1.632060023 2.583158755 1.609552975 1 15.44536646 -5.977859506 24.99880227 1.835214184 1.412698835 0.1119406 0.486410664 463.0819868 522862.7179 0.147222966 0.166923788 1.05E-06 5.977859506 -0.422515349 RPS(ph)QGPPARSPSQDFSFIEDTEILDSAMYR ddPTM_HeLa_A486_30min_R1 2 RPSQGPPARSPSQDFSFIEDTEILDSAMYR 30 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RPS(0.447)QGPPARS(0.447)PS(0.107)QDFSFIEDTEILDSAMYR;RPS(0.719)QGPPARS(0.278)PS(0.003)QDFSFIEDTEILDSAMYR ; 253.76 1.45E-63 131351000 43605 40123 58454 27689.8 104633 43253 72793 69898 40738 46197 TRUE FALSE FALSE 40548.51468 36943.50735 81088.95425 64463.25377 91508.95348 37916.88462 54579.42147 53983.75126 44269.20264 34628.97051 1.170941962 1.066838165 2.341650735 1.861541155 2.642554836 1.094946921 1.576120245 1.558918746 1.278386334 1 15.07969188 RPS(ph)QNAISFFNVGHSK ddPTM_HeLa_A485_30min_R1 1 RPSQNAISFFNVGHSK 16 1 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 RPS(0.989)QNAIS(0.011)FFNVGHSK 195.97 4.33E-19 891830000 218270 352670 285140 246550 406480 362180 451050 559450 362740 434840 TRUE FALSE FALSE 266823.4085 393911.6887 390625.1517 260018.4022 366009.424 381143.1848 354679.4828 422244.0103 435538.5908 326442.3906 0.817367524 1.206680566 1.196612826 0.79652156 1.121206787 1.167566455 1.086499465 1.29347175 1.334197406 1 18.31646889 -6.49022418 1.502103867 1.213895606 1.032753706 0.184329535 0.156463548 0.685400703 3.125287093 0.078763308 0.059426495 3.23E-07 6.49022418 -0.1811419 RPS(ph)QNAISFFNVGHSK ddPTM_HeLa_A486_30min_R1 1 RPSQNAISFFNVGHSK 16 1 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 RPS(0.978)QNAIS(0.022)FFNVGHSK 194.84 9.40E-19 680510000 506180 469590 281070 126590 478720 471110 515180 564670 369570 528640 TRUE FALSE FALSE 470699.3959 432377.9782 389907.8313 294707.9175 418674.4737 412989.2381 386276.515 436106.9677 401604.6252 396265.1031 1.187839636 1.09113312 0.983957023 0.743714032 1.056551461 1.04220441 0.974793167 1.10054346 1.013474621 1 18.5961064 -4.539912581 3.13302549 0.988453918 1.178912306 0.331759417 0.09016633 0.314410958 5.983337991 0.025167829 0.105801064 2.88E-05 4.539912581 0.190458389 RPS(ph)RHDNSAIGR ddPTM_HeLa_A485_30min_R1 1 RPSRHDNSAIGR 12 2 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 RPS(1)RHDNSAIGR 124.16 2.02E-05 36715000 6148.9 12945 10143 10162 8470.6 11264 9228.8 7949.9 15437 11141 TRUE FALSE FALSE 7516.701592 14458.80514 13895.31779 10717.12433 7627.237322 11853.76562 7256.991488 6000.17456 18535.0643 8363.753735 0.898723448 1.72874592 1.661373377 1.281377318 0.911939491 1.417278174 0.867671588 0.717402108 2.216117893 1 13.02993487 -5.515196348 23.74847637 1.163040742 1.461502124 0.052521377 0.444653417 483.4176932 1494384.252 0.125926877 0.170345109 3.05E-06 5.515196348 0.298461382 RPS(ph)RHDNSAIGR ddPTM_HeLa_A486_30min_R1 2 RPSRHDNSAIGR 12 2 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 RPS(1)RHDNSAIGR;RPS(1)RHDNSAIGR ; 171.81 5.30E-11 72573000 12674 12105.9 15897.2 693.16 14458.1 13881.3 15289.4 16894.3 13542 8442.1 TRUE FALSE FALSE 11785.61805 11146.5844 22053.02158 1613.71151 12644.63028 12168.76634 11463.83041 13047.83669 14715.83146 6328.143211 1.862413295 1.76143049 3.4849119 0.25500553 1.998158047 1.922960011 1.811563048 2.061874432 2.325458033 1 12.62756653 -5.244445175 24.99941794 1.704983722 2.308769422 0.177421112 0.716850631 1775.418941 2611736.584 0.192349701 0.332080204 5.70E-06 5.244445175 0.6037857 RPS(ph)SMYSTGGK ddPTM_HeLa_A485_30min_R1 2 RPSSMYSTGGK 11 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 RPS(0.762)S(0.238)MYS(0.001)TGGK;RPS(0.691)S(0.302)MYS(0.005)T(0.001)GGK ; 94.688 0.0057294 261540000 364940 427580 320050 357950 410790 474130 557830 618800 341930 501000 TRUE FALSE FALSE 446119.644 477581.7615 438449.8134 377503.9021 369890.3052 498954.7137 438645.0634 467038.3298 410552.2146 376109.9202 1.186141657 1.269793047 1.165749133 1.003706315 0.983463305 1.326619392 1.166268263 1.2417602 1.091575076 1 18.52079483 -8.004304271 22.27284802 0.999999991 1.164982489 0.214675014 0.101200656 59.059532 305617.7185 0.104624684 0.027013976 9.90E-09 8.004304271 0.164982498 RPS(ph)SMYSTGGK ddPTM_HeLa_A486_30min_R1 4 RPSSMYSTGGK 11 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 RPS(0.861)S(0.123)MYS(0.012)T(0.005)GGK;RPS(0.499)S(0.499)MYS(0.002)TGGK;RPS(0.5)S(0.5)MYSTGGK;RPS(0.642)S(0.357)MYSTGGK ;;; 118.51 0.00014026 475370000 1345830 1524030 1041890 514688 1498180 1353790 1657580 1692620 1234950 1594680 TRUE FALSE FALSE 1251494.267 1403260.312 1445337.711 1198219.675 1310264.294 1186773.154 1242835.952 1307247.376 1341996.46 1195361.748 1.046958604 1.173921045 1.209121601 1.002390847 1.09612366 0.992815067 1.039715344 1.093599806 1.122669738 1 20.18901585 -5.266080504 24.99988897 1.052674886 1.146392479 0.363762898 0.056653391 420.574214 2265470.724 0.015990506 0.02457449 5.42E-06 5.266080504 0.093717593 RPS(ph)SPVISK ddPTM_HeLa_A485_30min_R1 3 RPSSPVISK 9 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RPS(0.757)S(0.243)PVISK;RPS(0.639)S(0.361)PVISK;RPS(0.5)S(0.5)PVISK ;; 76.357 0.0062572 8017150000 1862190 2727100 2312110 1836060 2772690 2812030 2750740 3653680 2434040 2477870 TRUE FALSE FALSE 2276427.741 3046010.622 3167455.704 1936359.309 2496631.248 2959263.543 2163021.928 2757609.251 2922529.502 1860182.611 1.223765736 1.637479355 1.702766 1.040951193 1.342143096 1.590845719 1.162800853 1.482440076 1.571098173 1 20.82701282 -10.90750179 2.627648789 0.76108243 1.41830285 0.263582463 0.209167208 10510965.74 7233460.555 15550824.44 0.052446838 1.24E-11 10.90750179 0.65722042 RPS(ph)SPVISK ddPTM_HeLa_A486_30min_R1 5 RPSSPVISK 9 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RPS(0.759)S(0.241)PVISK;RPS(0.627)S(0.373)PVISK;RPS(0.646)S(0.354)PVISK;RPS(0.748)S(0.252)PVISK;RPS(0.5)S(0.5)PVISK ;;;; 133.18 0.000278 10970850000 6967940 7092220 5533640 2034030 7980740 6385810 7107440 7238500 5853160 7051380 TRUE FALSE FALSE 6479523.388 6530206.658 7676413.604 4735324.634 6979721.172 5597993.688 5329083.337 5590451.565 6360516.622 5285668.551 1.225866383 1.235455193 1.452307032 0.89587998 1.320499215 1.059089051 1.008213679 1.05766215 1.203351394 1 22.33365453 -5.255436286 24.99894259 1.086647938 1.29763409 0.412294572 0.123652165 509.1386921 2120223.179 0.032900401 0.05514738 5.55E-06 5.255436286 0.210986152 RPS(ph)STALHQHHF ddPTM_HeLa_A485_30min_R1 1 RPSSTALHQHHF 12 1 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 RPS(0.489)S(0.489)T(0.023)ALHQHHF 129.01 2.71E-05 71469000 21426 41778 37422 18978 38398 30421 38019 43044 31683 27168 TRUE FALSE FALSE 26192.13978 46663.57368 51265.95506 20014.72009 34574.9603 32013.79652 29895.93006 32487.39151 38041.48749 20395.51759 1.284210595 2.287932801 2.513589314 0.981329353 1.69522348 1.569648644 1.465808844 1.592869186 1.865188629 1 14.3159645 -5.258169937 24.99499328 1.493073113 2.054513058 0.304475649 0.394905798 361.2956943 2762104.355 0.106683195 0.175319506 5.52E-06 5.258169937 0.561439945 RPS(ph)STALHQHHF ddPTM_HeLa_A486_30min_R1 3 RPSSTALHQHHF 12 1 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 RPS(0.483)S(0.483)T(0.035)ALHQHHF;RPS(0.491)S(0.491)T(0.017)ALHQHHF;RPS(0.493)S(0.493)T(0.014)ALHQHHF ;; 163.99 2.14E-10 388860000 149418 169738 167347 28299.4 181796 120878 133586 151176 132456 112804 TRUE FALSE FALSE 138944.5698 156287.3427 232148.2401 65882.43337 158993.4505 105965.3014 100161.3699 116756.5249 143937.3927 84557.14417 1.643203199 1.848304413 2.7454598 0.77914686 1.880307715 1.253179757 1.184540595 1.38080024 1.70224993 1 16.36763903 -5.267616888 24.997375 1.34331267 2.055920662 0.437873706 0.397113219 475.9181594 1925810.28 0.108514361 0.165574399 5.40E-06 5.267616888 0.712607993 RPS(ph)SVGELASLGQELQAITTATTPSLDSEGQEPALR ddPTM_HeLa_A485_30min_R1 1 RPSSVGELASLGQELQAITTATTPSLDSEGQEPALR 36 1 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 RPS(0.438)S(0.438)VGELAS(0.125)LGQELQAITTATTPSLDSEGQEPALR 116.36 2.95E-05 7657400 2558.2 3603.6 3877.7 3035.9 3570.5 2298.6 4312 2518.6 3921.8 4805.9 TRUE FALSE FALSE 3127.262764 4025.009673 5312.222595 3201.74353 3215.008483 2418.951142 3390.705974 1900.909401 4708.869287 3607.877576 0.866787384 1.115617032 1.472395469 0.887431312 0.891107976 0.670463753 0.939806272 0.526877468 1.305163268 1 11.81693467 -5.483129682 24.74328428 0.859815505 1.153320417 0.200825116 0.236092672 647.0680391 402791.0736 0.064139044 0.095115492 3.29E-06 5.483129682 0.293504912 RPS(ph)SVGELASLGQELQAITTATTPSLDSEGQEPALR ddPTM_HeLa_A486_30min_R1 1 RPSSVGELASLGQELQAITTATTPSLDSEGQEPALR 36 1 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 RPS(0.488)S(0.488)VGELAS(0.025)LGQELQAITTATTPSLDSEGQEPALR 112.73 4.40E-05 8674700 3366.7 4914.4 3993 2471.2 4986.5 3639.5 4878.8 4208.6 5981.8 4242.3 TRUE FALSE FALSE 3130.711716 4524.965046 5539.196536 5753.078488 4361.046673 3190.495494 3658.072637 3250.393653 6500.30724 3180.000467 0.984500395 1.422944774 1.741885447 1.809143913 1.371398123 1.003300322 1.150337138 1.022136219 2.044121473 1 11.63481126 -5.999414793 24.9999544 1.233714278 1.513799749 0.095625029 0.352683072 46.57319035 1989428.105 0.111666785 0.125490081 1.00E-06 5.999414793 0.280085471 RPS(ph)TASLTR ddPTM_HeLa_A485_30min_R1 2 RPSTASLTR 9 1 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 RPS(0.611)T(0.267)AS(0.122)LTR;RPS(0.941)T(0.053)AS(0.006)LTR ; 77.813 0.0056825 588120000 135589 151036 144792 136229 142410 124518 138240 137716 104439 136280 TRUE FALSE FALSE 165750.3053 168698.3464 198356.5861 143670.8453 128231.1604 131037.5699 108703.8947 103940.9351 125398.9493 102307.904 1.620112413 1.648927792 1.938819761 1.404298589 1.253384688 1.280815702 1.062517072 1.015961924 1.225701479 1 16.64255808 -5.655347357 1.895500166 1.121663157 1.727926384 0.825268592 0.122443774 0.135387505 0.99694586 0.042181198 0.060050391 2.21E-06 5.655347357 0.606263227 RPS(ph)TASLTR ddPTM_HeLa_A486_30min_R1 1 RPSTASLTR 9 1 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 RPS(0.971)T(0.029)ASLTR 107.53 0.00062206 311440000 73076 82500 63480 29267 70898 65562 60037 59924 60222 55443 TRUE FALSE FALSE 67953.74976 75962.39954 88061.15605 68135.05507 62005.31174 57473.62703 45015.10759 46280.61333 65442.09145 41559.71193 1.635087122 1.827789367 2.118906796 1.639449648 1.491957207 1.382916877 1.083142917 1.113593218 1.574652191 1 15.34289803 -5.943566386 1.557238496 1.214673459 1.854477589 0.681391161 0.188806145 0.224640885 1.119207769 0.074676583 0.086976142 1.14E-06 5.943566386 0.63980413 RPS(ph)TFGIPR ddPTM_HeLa_A486_30min_R1 1 RPSTFGIPR 9 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 RPS(0.915)T(0.085)FGIPR 115.33 0.00090887 0 33224 43586 48900 10155 53600 30320 45627 46891 39549 31405 TRUE FALSE FALSE 30895.16917 40132.08662 67835.38959 23641.35321 46876.9882 26579.42667 34210.64201 36214.94292 42977.13916 23540.98359 1.312399248 1.704775269 2.881586886 1.004263612 1.991292676 1.129070354 1.453237579 1.538378496 1.825630565 1 14.52288698 RPS(ph)VDAPVTDVGFLR ddPTM_HeLa_A485_30min_R1 4 RPSVDAPVTDVGFLR 15 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8;G3V536;G3V3S3 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR ;;; 199.36 1.73E-25 878690000 309378 384818 409290 341432 414064 356421 399178 391211 344169 429039 TRUE FALSE FALSE 378198.0688 429819.1176 560703.403 360083.5656 372838.3343 375082.6524 313890.3593 295265.8889 413240.5614 322087.4732 1.174209183 1.334479461 1.740842006 1.11796824 1.157568566 1.164536605 0.974550038 0.916725776 1.283007244 1 18.29709303 -5.485395382 24.58047018 1.082750576 1.411823623 0.458511825 0.164074527 419.0020956 274768.6678 0.046894218 0.069532765 3.27E-06 5.485395382 0.329073047 RPS(ph)VDAPVTDVGFLR ddPTM_HeLa_A486_30min_R1 4 RPSVDAPVTDVGFLR 15 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8;G3V536;G3V3S3 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR ;;; 255.69 1.81E-50 1106220000 400461 446381 406077 147971 540061 435635 408354 444313 432300 457923 TRUE FALSE FALSE 372390.7519 411008.1439 563320.8895 344483.966 472321.5135 381890.7829 306179.5101 343152.6292 469772.1121 343256.1002 1.084877302 1.19738045 1.641109624 1.003577113 1.376003262 1.112553521 0.891985634 0.99969856 1.36857615 1 18.38892583 -6.462907239 7.665750493 1.056249317 1.262635524 0.184036803 0.197479927 0.495296668 57.16441259 0.069793705 0.06113254 3.44E-07 6.462907239 0.206386208 RPS(ph)VGSQSNQAGQGK ddPTM_HeLa_A485_30min_R1 1 RPSVGSQSNQAGQGK 15 1 H0Y3N9;Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1 H0Y3N9 PHF8 Histone lysine demethylase PHF8 1 0 RPS(0.75)VGS(0.239)QS(0.011)NQAGQGK 89.344 0.00073144 61351000 81219 82678 63457 83547 89056 85068 97951 99362 73752 98360 TRUE FALSE FALSE 99285.88635 92346.4729 86932.38497 88110.96106 80189.27195 89522.02894 77022.96866 74993.31371 88553.34991 73840.66218 1.34459637 1.250618158 1.177296931 1.193258002 1.085977151 1.212367635 1.043096939 1.015609984 1.19924913 1 16.17212787 -1 0.259864817 1.043585292 3.024436841 0.644100717 0.063406049 31.27874243 0.431493969 0.075522375 27.43977545 0.1 1 1.98085155 RPS(ph)VGSQSNQAGQGK ddPTM_HeLa_A486_30min_R1 1 RPSVGSQSNQAGQGK 15 1 H0Y3N9;Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1 H0Y3N9 PHF8 Histone lysine demethylase PHF8 1 0 RPS(0.927)VGS(0.058)QS(0.015)NQAGQGK 66.152 0.0083861 72587000 61521 64975 41917 29445 64630 67085 79110 72295 53592 93924 TRUE FALSE FALSE 57208.69559 59826.14437 58148.38498 68549.44807 56523.50275 58808.73477 59315.84126 55835.00669 58237.39771 70404.81906 0.812567895 0.84974502 0.825914842 0.973647102 0.802835708 0.835294168 0.842496892 0.793056604 0.82717914 1 16.10338656 -10.04260341 4.783549366 1.000003192 0.841505954 0.502654395 0.047641592 2.14E-06 4.29E-07 0.046643268 0.011312356 9.07E-11 10.04260341 -0.158497237 RPS(ph)VNGEPGSVPPPR ddPTM_HeLa_A485_30min_R1 2 RPSVNGEPGSVPPPR 15 1 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 RPS(1)VNGEPGSVPPPR;RPS(1)VNGEPGSVPPPR ; 143.33 5.42E-08 458550000 193956 190240 238327 235426 277737 171253 236886 204283 245418 350125 TRUE FALSE FALSE 237100.8431 212486.9131 326494.0749 248286.7262 250084.5291 180219.5423 186273.3709 154182.2739 294671.1415 262845.2811 0.902054783 0.808410607 1.242153078 0.944611694 0.95145147 0.685648765 0.708680674 0.586589469 1.121082107 1 18.00385431 -6.13058035 6.243463949 0.7880938 0.977479122 0.137413709 0.178531013 0.397840732 18.52676554 0.058857217 0.059000808 7.40E-07 6.13058035 0.189385322 RPS(ph)VNGEPGSVPPPR ddPTM_HeLa_A486_30min_R1 2 RPSVNGEPGSVPPPR 15 1 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 RPS(1)VNGEPGSVPPPR;RPS(1)VNGEPGSVPPPR ; 177.4 2.51E-13 899290000 288240 422210 331510 111023 406590 336870 355280 380710 335720 317600 TRUE FALSE FALSE 268035.8645 388752.5419 459879.5501 258467.1548 355591.6909 295310.4044 266385.1862 294030.6438 364820.4799 238070.8928 1.125865751 1.632927644 1.931691627 1.085673061 1.493637827 1.240430533 1.118932193 1.235054989 1.532402704 1 17.86103172 -5.285744557 24.99013295 1.258602068 1.57043841 0.268817691 0.240714394 1021.949527 1050747.302 0.067511217 0.100190043 5.18E-06 5.285744557 0.311836342 RPSASS(ph)PNNNTAAK ddPTM_HeLa_A485_30min_R1 1 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 RPS(0.152)AS(0.05)S(0.799)PNNNTAAK 138.46 3.18E-06 437580000 129780 171470 117670 137420 178810 167520 201590 291490 157800 244580 TRUE FALSE FALSE 158649.1133 191521.9249 161201.0297 144926.9066 161007.0486 176291.0882 158518.6497 220001.6205 189469.0126 183610.7072 0.864051534 1.043086909 0.877950051 0.789316205 0.87689357 0.960135119 0.86334099 1.19819603 1.031906121 1 17.48629067 -7.24637957 24.94413142 1.086288312 0.898911724 0.519388601 0.079295091 581.4103989 963013.9922 0.037861177 0.021750574 5.67E-08 7.24637957 -0.187376588 RPSASS(ph)PNNNTAAK ddPTM_HeLa_A486_30min_R1 1 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 RPS(0.048)AS(0.19)S(0.762)PNNNTAAK 158.92 3.49E-09 191530000 174860 166440 103730 61485 165490 158720 197640 183000 128240 215540 TRUE FALSE FALSE 162603.217 153250.6882 143897.034 143140.1873 144732.7011 139138.7401 148188.3816 141334.8949 139355.9465 161567.3811 1.00641117 0.948524926 0.890631717 0.885947314 0.895803968 0.861180885 0.917192447 0.874773695 0.862525254 1 17.30177644 -4.479137013 2.28814546 0.892499445 1.01219378 0.436697507 0.038107239 0.317670448 2.679073885 0.009386826 0.063109381 3.32E-05 4.479137013 0.119694336 RPSDLTISINQMGS(ph)PGMGHLK ddPTM_HeLa_A486_30min_R1 1 RPSDLTISINQMGSPGMGHLK 21 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 RPSDLTISINQMGS(1)PGMGHLK 208.96 6.92E-27 93215000 162740 140810 90885 48655 119370 107120 117180 124600 92123 119520 TRUE FALSE FALSE 151332.7664 129651.7028 126078.106 113271.2989 104397.5015 93904.62352 87860.3246 96231.3 100108.2958 89591.41406 1.68914363 1.447144284 1.407256569 1.264309756 1.165262348 1.048143112 0.980677954 1.074112972 1.117387161 1 16.45107286 -4.808023502 0.625475759 1.026713737 1.838326213 0.948251767 0.049773062 0.428324258 0.199389855 0.028546883 0.22798362 1.56E-05 4.808023502 0.811612476 RPSES(ph)DKEDELDK ddPTM_HeLa_A486_30min_R1 1 RPSESDKEDELDK 13 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 RPS(0.253)ES(0.747)DKEDELDK 108.56 0.00073663 0 292250 279570 89034 246130 150170 428910 507000 402960 239470 830550 TRUE FALSE FALSE 271764.7842 257415.855 123510.3492 573003.0787 131334.2783 375995.445 380143.2375 311214.8046 260227.4524 622574.874 0.43651743 0.413469714 0.198386338 0.920376171 0.210953387 0.603936106 0.610598425 0.499883335 0.417985793 1 19.24788783 -14 0.255447164 4.216106627 0.439397946 0.385274455 0.197226105 195.9799073 1.93668498 330.2802592 0.263673298 1.00E-14 14 -3.776708681 RPSFSS(ph)HHLMPCDTLAR ddPTM_HeLa_A486_30min_R1 1 RPSFSSHHLMPCDTLAR 17 1 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RPS(0.304)FS(0.304)S(0.391)HHLMPCDTLAR 58.914 0.023204 292610000 106120 97912 70579 23528 103100 90880 118460 105070 72491 116040 TRUE FALSE FALSE 98681.536 90153.09653 97909.07897 54774.37304 90168.23663 79668.1496 88820.05506 81147.85466 78774.57825 86982.82871 1.134494445 1.036447054 1.125613876 0.629714782 1.036621112 0.915906631 1.021121713 0.932918093 0.905633668 1 16.40844301 RPSGRDT(ph)PISEGPK ddPTM_HeLa_A486_30min_R1 2 RPSGRDTPISEGPK 14 2 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 RPS(0.184)GRDT(0.816)PISEGPK;RPS(0.06)GRDT(0.939)PIS(0.001)EGPK ; 135.09 1.12E-05 180009000 181639 226936 169011 97218 238880 241240 252350 263350 209252 257980 TRUE FALSE FALSE 168907.0441 208952.7649 234456.5855 226328.4171 208917.4429 211478.2615 189209.3609 203390.9539 227390.1318 193380.1288 0.873445711 1.080528626 1.212413017 1.170380941 1.08034597 1.093588379 0.978432283 1.051767599 1.17587124 1 17.56108003 -8.877533171 14.49572894 1.000006936 1.082875827 0.059371312 0.094312774 0 0 0.094699507 0.022968004 1.33E-09 8.877533171 0.082868891 RPSGRS(ph)PTSTEK ddPTM_HeLa_A485_30min_R1 2 RPSGRSPTSTEK 12 2 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.136)GRS(0.764)PT(0.03)S(0.03)T(0.041)EK;RPS(0.03)GRS(0.956)PTS(0.011)T(0.003)EK ; 98.676 0.00086843 118011000 52430 89769 76784 81313 158761 128084 171848 260070 93419 122918 TRUE FALSE FALSE 64092.87262 100266.7037 105189.5968 85754.92329 142954.1974 134790.2802 135131.2709 196287.4247 112167.3364 92276.80474 0.694571868 1.086586211 1.139935406 0.929322635 1.549188854 1.460716814 1.464412117 2.127158881 1.215552887 1 16.49368043 -5.763419409 24.98559941 1.525168886 0.984126372 0.408285889 0.293955544 48.10878983 607077.0069 0.087004122 0.103659985 1.72E-06 5.763419409 -0.541042513 RPSGRS(ph)PTSTEK ddPTM_HeLa_A486_30min_R1 1 RPSGRSPTSTEK 12 2 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.055)GRS(0.861)PT(0.028)S(0.046)T(0.01)EK 105.17 0.00040619 229730000 59296 45271 63363 44807 117090 81211 111510 116760 66686 88097 TRUE FALSE FALSE 55139.6566 41683.56109 87898.85052 104312.9604 102403.4804 71192.01251 83609.01857 90176.29685 72466.39617 66036.93778 0.834982034 0.631215839 1.331055822 1.579615347 1.550700014 1.078063504 1.266094725 1.365543283 1.097361546 1 16.0109856 -4.766277334 24.98203415 1.308761472 0.733098857 0.577166117 0.187468221 71.73971326 370454.4047 0.050114613 0.109938813 1.71E-05 4.766277334 -0.575662615 RPSGRS(ph)PTSTEKR ddPTM_HeLa_A485_30min_R1 2 RPSGRSPTSTEKR 13 3 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.011)GRS(0.985)PT(0.004)STEKR;RPS(0.388)GRS(0.601)PT(0.003)S(0.003)T(0.006)EKR ; 132.84 9.45E-05 575810000 104926 224278 160054 111247 302750 323310 388770 664860 200131 195547 TRUE FALSE FALSE 128266.4267 250505.3611 219264.635 117324.1419 272607.147 340238.0117 305706.1135 501802.0425 240295.456 146800.7317 0.873745146 1.706431285 1.493620859 0.799206793 1.856987658 2.317686075 2.082456334 3.418253007 1.636881869 1 17.16349963 -5.970846729 5.764275802 2.227918432 1.273034957 0.290264172 0.626607597 0.200837886 19.47309079 0.191386695 0.213793547 1.07E-06 5.970846729 -0.954883476 RPSGRS(ph)PTSTEKR ddPTM_HeLa_A486_30min_R1 2 RPSGRSPTSTEKR 13 3 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.497)GRS(0.5)PT(0.002)STEKR;RPS(0.291)GRS(0.703)PT(0.005)ST(0.001)EKR ; 94.487 0.0072813 342270000 135911 97383 132783 86508 262890 154941 231740 237368 110860 204067 TRUE FALSE FALSE 126384.3407 89666.01642 184200.1337 201394.9959 229915.8848 135825.9547 173756.2009 183324.4881 120469.4341 152967.2949 0.826218054 0.586177695 1.204179846 1.316588595 1.503039489 0.887941143 1.135904253 1.198455449 0.787550268 1 17.22286371 -4.766493477 24.99514664 1.147960965 0.706197829 0.409622308 0.202133651 104.7732941 518168.8684 0.053858936 0.117904863 1.71E-05 4.766493477 -0.441763136 RPSGRSPTS(ph)TEK ddPTM_HeLa_A485_30min_R1 2 RPSGRSPTSTEK 12 2 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.254)GRS(0.131)PT(0.154)S(0.4)T(0.06)EK;RPS(0.039)GRS(0.108)PT(0.201)S(0.642)T(0.01)EK ; 118.71 0.00012256 412740000 184429 318980 233610 258880 507260 447550 625340 907180 329380 467260 TRUE FALSE FALSE 225454.5948 356281.9362 320032.0603 273021.9589 456755.4133 470983.026 491731.0004 684692.6826 395483.5447 350780.6813 0.642722381 1.01568289 0.912342319 0.778326668 1.302111084 1.342670937 1.401818933 1.951911035 1.127438214 1 18.42020977 -5.859488333 4.115133084 1.417289958 0.854918266 0.497058887 0.251702623 0.176391118 5.489851779 0.078574741 0.091090618 1.38E-06 5.859488333 -0.562371692 RPSGRSPTS(ph)TEK ddPTM_HeLa_A486_30min_R1 1 RPSGRSPTSTEK 12 2 A1L390-3;A1L390;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RPS(0.101)GRS(0.03)PT(0.153)S(0.564)T(0.153)EK 55.66 0.028128 60916000 50098 41607 49720 37746 92583 64375 91637 90153 46350 73588 TRUE FALSE FALSE 46586.38891 38309.90979 68972.91555 87874.59558 80970.37684 56433.06702 68708.45336 69627.12993 50367.65532 55161.08582 0.844551702 0.694509711 1.250390824 1.59305413 1.467889466 1.023059394 1.245596462 1.262250895 0.91310123 1 15.75136324 -4.766559798 24.99827566 1.244924249 0.769530643 0.442271525 0.200452796 100.1364944 488883.4607 0.054697857 0.119678367 1.71E-05 4.766559798 -0.475393607 RPSQGPPARS(ph)PSQDFSFIEDTEILDSAMYR ddPTM_HeLa_A485_30min_R1 1 RPSQGPPARSPSQDFSFIEDTEILDSAMYR 30 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RPS(0.204)QGPPARS(0.794)PS(0.002)QDFSFIEDTEILDSAMYR 331.57 1.99E-127 104180000 25775 48013 50085 22651 83105 60960 67334 113270 49864 43646 TRUE FALSE FALSE 31508.55983 53627.70269 68613.52571 23888.36677 74830.7744 64151.77134 52947.54083 85490.3549 59871.24742 32765.85545 0.961627871 1.636694723 2.09405568 0.729062814 2.283803471 1.957884831 1.615936471 2.609129343 1.827245058 1 14.99990558 -5.791709861 24.99913054 1.953247286 1.428217989 0.181640655 0.52641568 337.0205968 278329.5308 0.157616534 0.178741842 1.62E-06 5.791709861 -0.525029296 RPSS(ph)GNASYR ddPTM_HeLa_A485_30min_R1 1 RPSSGNASYR 10 1 Q5T0V7;Q03001-11 Q5T0V7 DST Dystonin 1 0 RPS(0.176)S(0.824)GNASYR 60.157 0.017438 119340000 109780 135370 132840 144170 175270 141980 175940 199390 142750 206580 TRUE FALSE FALSE 134200.1823 151200.3439 181983.0439 152045.642 157819.5034 149413.8533 138348.9817 150489.2899 171398.6156 155083.4078 0.865341974 0.974961449 1.173452702 0.980412052 1.017642736 0.963441901 0.892094026 0.97037647 1.105202794 1 17.24268482 -6.25352734 23.70266926 0.978488506 1.009125495 0.001663769 0.086033009 1561.565471 4678093.461 0.030091949 0.029498407 5.58E-07 6.25352734 0.030636989 RPSS(ph)GNASYR ddPTM_HeLa_A486_30min_R1 2 RPSSGNASYR 10 1 Q5T0V7;Q03001-11 Q5T0V7 DST Dystonin 1 0 RPS(0.028)S(0.971)GNASYR;RPS(0.16)S(0.84)GNASYR ; 64.827 0.012123 174217000 71959 63497 66271 44137 90249 95733 90629 85471 75113 114253 TRUE FALSE FALSE 66915.0457 58465.26647 91932.906 102753.1666 78929.12888 83922.4358 67952.66562 66011.11912 81623.85532 85643.30514 0.781322552 0.682660091 1.073439492 1.199780489 0.921603023 0.979906552 0.79343815 0.770768001 0.953067554 1 16.38605285 -9.514591584 14.66664731 1.000004561 0.90851628 0.034726439 0.147883056 0 0 0.157294159 0.038149437 3.06E-10 9.514591584 -0.091488281 RPSS(ph)MYSTGGK ddPTM_HeLa_A485_30min_R1 2 RPSSMYSTGGK 11 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 RPS(0.202)S(0.798)MYSTGGK;RPS(0.205)S(0.795)MYSTGGK ; 109.1 0.00035059 489350000 951720 1065610 894750 1130380 1155190 1181900 1507760 1569560 941800 1384450 TRUE FALSE FALSE 1163426.831 1190223.82 1225755.259 1192129.797 1040175.227 1243782.456 1185614.759 1184622.949 1130810.621 1039332.094 1.119398542 1.145181436 1.179368236 1.147015284 1.000811226 1.19671322 1.140746799 1.139792522 1.088016648 1 19.98722528 -8.092325626 2.847568924 1.000115326 1.13382431 0.406258713 0.049363295 0.392176073 7.077686516 0.04793318 0.0128559 8.08E-09 8.092325626 0.133708984 RPSS(ph)MYSTGGK ddPTM_HeLa_A486_30min_R1 1 RPSSMYSTGGK 11 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 RPS(0.065)S(0.59)MYS(0.172)T(0.172)GGK 87.251 0.0085218 71652000 206410 207430 148600 73646 208830 191020 252590 249130 166680 242660 TRUE FALSE FALSE 191941.7249 190992.4914 206141.8996 171451.6099 182636.5941 167453.8945 189389.3104 192408.5375 181127.9566 181896.3565 1.055225781 1.05000724 1.133293176 0.942578582 1.004069557 0.920600598 1.041193534 1.057792147 0.995775617 1 17.47275712 -5.26277074 24.99871919 0.996236915 1.076558582 0.444644962 0.043433649 121.098704 2273860.826 0.012619114 0.019931745 5.46E-06 5.26277074 0.080321667 RPSS(ph)PLIDIKPIEFGVLSAK ddPTM_HeLa_A485_30min_R1 1 RPSSPLIDIKPIEFGVLSAK 20 2 H3BSP0;H3BMD4;H3BQZ6;H3BRH9;H3BN78;Q9BSW7 H3BSP0 SYT17 Synaptotagmin-17 1 0 RPS(0.367)S(0.633)PLIDIKPIEFGVLSAK 189.88 1.34E-19 106560000 84083 62757 42104 87711 68777 86475 126970 115760 58923 163800 TRUE FALSE FALSE 102786.9733 70095.88524 57680.02169 92502.42983 61929.32039 91002.69728 99841.82225 87369.6785 70748.30563 122967.6745 0.835886128 0.570035056 0.469066541 0.752249973 0.503622766 0.74005382 0.811935516 0.710509318 0.575340681 1 16.90791959 -6.474091856 19.06058372 0.753989523 0.621379327 0.196820138 0.141607609 49.01781823 19150.09447 0.048511407 0.042776265 3.36E-07 6.474091856 -0.132610196 RPSS(ph)PLIDIKPIEFGVLSAK ddPTM_HeLa_A486_30min_R1 1 RPSSPLIDIKPIEFGVLSAK 20 2 H3BSP0;H3BMD4;H3BQZ6;H3BRH9;H3BN78;Q9BSW7 H3BSP0 SYT17 Synaptotagmin-17 1 0 RPS(0.35)S(0.65)PLIDIKPIEFGVLSAK 215.46 1.49E-35 195040000 86010 81342 44782 36881 86096 97452 100750 97987 78144 153370 TRUE FALSE FALSE 79981.14316 74896.16368 62122.7897 85860.83186 75297.03687 85429.36306 75541.28438 75677.49914 84917.58484 114965.1537 0.695699006 0.651468391 0.540361907 0.746842231 0.654955301 0.743089191 0.657079836 0.658264671 0.738637597 1 16.81083712 -14 0.257920519 3.09300732 0.646977285 0.762015704 0.05525022 90.55747661 0.892880591 100.1805763 0.075019686 1.00E-14 14 -2.446030035 RPSS(ph)PVISK ddPTM_HeLa_A485_30min_R1 4 RPSSPVISK 9 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RPS(0.356)S(0.644)PVISK;RPS(0.073)S(0.927)PVISK;RPS(0.057)S(0.943)PVISK;RPS(0.138)S(0.862)PVISK ;;; 122.52 0.00020058 18324950000 6594980 8148280 7046950 6925640 9115250 8390410 10111780 11529580 7383180 9092730 TRUE FALSE FALSE 8062010.549 9101150.465 9653910.053 7303970.177 8207703.704 8829718.894 7951315.597 8701932.427 8864916.503 6826079.75 1.181060117 1.333290966 1.414268571 1.070009499 1.202403723 1.293527063 1.164843642 1.274806733 1.298683407 1 22.70262584 -10.73515658 2.883673282 0.957172163 1.248583276 0.39334319 0.092432405 29878162.66 23734589.19 9110371.488 0.023471979 1.84E-11 10.73515658 0.291411112 RPSS(ph)PVISK ddPTM_HeLa_A486_30min_R1 3 RPSSPVISK 9 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 RPS(0.311)S(0.689)PVISK;RPS(0.134)S(0.866)PVISK;RPS(0.097)S(0.903)PVISK ;; 125.03 0.00017599 11769760000 3401840 3422540 2661180 1049020 3730660 3002500 3293090 3448020 2762070 3286570 TRUE FALSE FALSE 3163388.583 3151325.466 3691660.165 2442171.575 3262725.836 2632082.077 2469124.051 2662981.116 3001488.452 2463591.48 1.28405566 1.279159102 1.498487146 0.991305415 1.324377788 1.068392263 1.002245734 1.080934537 1.218338542 1 21.23233161 -5.266941805 24.99991101 1.105530549 1.346426483 0.515069442 0.113575221 376.4027767 1710162.806 0.031656946 0.048519181 5.41E-06 5.266941805 0.240895935 RPSTSQTVS(ph)TPAPVPVIESTEAIEAK ddPTM_HeLa_A485_30min_R1 1 RPSTSQTVSTPAPVPVIESTEAIEAK 26 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 RPS(0.013)T(0.013)S(0.013)QT(0.013)VS(0.561)T(0.386)PAPVPVIESTEAIEAK 174.46 1.79E-14 306620000 89979 83999 68796 105530 118000 94501 132920 117950 79806 146210 TRUE FALSE FALSE 109994.5181 93821.95236 94246.50324 111294.8367 106251.5057 99448.92623 104520.5561 89022.57756 95822.33218 109762.5378 1.002113475 0.854772077 0.85863998 1.013960126 0.968012473 0.906037053 0.952242525 0.811047005 0.87299669 1 16.74402622 -9.265081466 6.673697651 0.999999997 0.914240455 0.134992883 0.064067465 22629857.93 71672482.41 0.064339495 0.016612387 5.43E-10 9.265081466 -0.085759541 RPSTSQTVS(ph)TPAPVPVIESTEAIEAK ddPTM_HeLa_A486_30min_R1 2 RPSTSQTVSTPAPVPVIESTEAIEAK 26 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 RPS(0.081)T(0.081)S(0.081)QT(0.068)VS(0.343)T(0.343)PAPVPVIES(0.001)T(0.001)EAIEAK;RPS(0.145)T(0.145)S(0.145)QT(0.169)VS(0.198)T(0.198)PAPVPVIESTEAIEAK ; 65.071 0.0095228 428800000 59592 54467 29411 19559.2 50078 52726 67543 56857 42244 64581 TRUE FALSE FALSE 55414.90853 50150.83655 40799.72685 45534.80607 43796.75028 46221.2022 50643.027 43911.90228 45905.74393 48409.49725 1.144711507 1.035971026 0.842804185 0.940617206 0.904714008 0.954796162 1.046138256 0.907092715 0.948279708 1 15.56300249 -4.516744997 5.346497391 0.941804905 1.123209518 0.592692679 0.052424225 0.106067729 9.824574452 0.013558036 0.045511394 3.04E-05 4.516744997 0.181404612 RPSTSQTVST(ph)PAPVPVIESTEAIEAK ddPTM_HeLa_A485_30min_R1 2 RPSTSQTVSTPAPVPVIESTEAIEAK 26 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 RPS(0.133)T(0.133)S(0.133)QT(0.162)VS(0.197)T(0.241)PAPVPVIESTEAIEAK;RPS(0.013)T(0.013)S(0.01)QT(0.008)VS(0.411)T(0.546)PAPVPVIESTEAIEAK ; 142.37 6.32E-09 413700000 143387 122734 90662 147186 144800 133295 151150 145406 75129 176231 TRUE FALSE FALSE 175282.9435 137086.6737 124201.6466 155226.3985 130383.2036 140274.1201 118855.5677 109744.9505 90206.70118 132299.855 1.324891425 1.036181587 0.938788985 1.17329228 0.985512823 1.060274179 0.898380181 0.829516786 0.681835223 1 17.01345195 -6.835030052 1.847808391 0.814681044 1.085163924 0.468591185 0.122978078 0.307997303 2.137976541 0.066430664 0.039114584 1.46E-07 6.835030052 0.27048288 RPSTSQTVST(ph)PAPVPVIESTEAIEAK ddPTM_HeLa_A486_30min_R1 1 RPSTSQTVSTPAPVPVIESTEAIEAK 26 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 RPS(0.004)T(0.004)S(0.003)QT(0.002)VS(0.036)T(0.951)PAPVPVIESTEAIEAK 150.98 3.22E-09 416480000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RPSVGS(ph)QSNQAGQGK ddPTM_HeLa_A486_30min_R1 1 RPSVGSQSNQAGQGK 15 1 H0Y3N9;Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1 H0Y3N9 PHF8 Histone lysine demethylase PHF8 1 0 RPS(0.321)VGS(0.656)QS(0.023)NQAGQGK 84.829 0.0011908 70591000 44095 40142 28163 24242 39358 44106 50136 47494 39072 57450 TRUE FALSE FALSE 41004.16821 36961.00173 39068.46783 56436.60112 34421.35264 38664.65016 37591.44252 36680.65299 42458.79242 43064.14606 0.952164897 0.858277827 0.907215663 1.310524097 0.799304196 0.897838543 0.872917402 0.851767801 0.985942978 1 15.3941996 RPT(ph)SLSR ddPTM_HeLa_A486_30min_R1 1 RPTSLSR 7 1 Q92619;K7EM85;K7ES98;Q92619-2;K7EQA4 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 RPT(0.935)S(0.064)LS(0.001)R 63.076 0.014104 0 15051 21228 19251 5272.9 18423 14900 15606 19793 15508 17950 TRUE FALSE FALSE 13996.00262 19545.81597 26705.50276 12275.57768 16112.21555 13061.78949 11701.21374 15286.56598 16852.24593 13455.20317 1.04019259 1.452658554 1.984771425 0.912329418 1.197470997 0.970761224 0.869642293 1.13610815 1.252470566 1 13.71587655 -5.301391473 24.99929223 1.049597073 1.488553391 0.417050361 0.240615494 497.1156483 311060.0096 0.068926583 0.102236179 5.00E-06 5.301391473 0.438956319 RPTETNPVTSNS(ph)DEECNETVK ddPTM_HeLa_A485_30min_R1 4 RPTETNPVTSNSDEECNETVK 21 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RPTETNPVT(0.001)S(0.037)NS(0.962)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTS(0.005)NS(0.995)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK ;;; 346.52 5.52E-128 9477100000 1844140 1542800 1368670 2471710 1876650 1462530 2092830 1441360 1687470 3306810 TRUE FALSE FALSE 2254362.581 1723217.039 1874997.988 2606733.259 1689804.137 1539105.809 1645679.774 1087864.2 2026129.751 2482483.124 0.908107918 0.694150555 0.755291333 1.050050747 0.680691087 0.619986414 0.662916802 0.438216151 0.816170604 1 21.24335248 -5.957079418 24.99984281 0.667426216 0.837686767 0.1451382 0.162784394 223.6112755 130245.3025 0.048820742 0.055357482 1.10E-06 5.957079418 0.17026055 RPTETNPVTSNS(ph)DEECNETVK ddPTM_HeLa_A486_30min_R1 4 RPTETNPVTSNSDEECNETVK 21 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RPTETNPVT(0.001)S(0.002)NS(0.998)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK ;;; 344.21 1.01E-115 12291500000 1257100 1528930 957250 531627 1271930 1491670 1654920 1531250 1215280 1694420 TRUE FALSE FALSE 1168983.782 1407772.019 1327922.836 1237654.523 1112392.679 1307642.922 1240841.512 1182617.802 1320621.449 1270126.203 0.920368211 1.108371763 1.045504638 0.974434288 0.875812716 1.029537788 0.976943479 0.931102594 1.039756085 1 20.27654042 -5.273018977 19.85084869 0.970673157 1.033110541 0.110607503 0.061841777 79.21740522 135803.7593 0.01692578 0.025502785 5.33E-06 5.273018977 0.062437384 RPTETNPVTSNS(ph)DEECNETVKEK ddPTM_HeLa_A485_30min_R1 4 RPTETNPVTSNSDEECNETVKEK 23 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RPTETNPVT(0.003)S(0.018)NS(0.98)DEECNETVKEK;RPTETNPVTSNS(1)DEECNETVKEK;RPTETNPVTSNS(0.999)DEECNET(0.001)VKEK;RPTETNPVTSNS(1)DEECNETVKEK ;;; 283.22 2.82E-75 3238400000 695458 667047 584181 1074552 1297426 987449 1753810 1841930 813451 1727990 TRUE FALSE FALSE 850160.2328 745052.3441 800293.8617 1133252.055 1168249.712 1039150.303 1379094.166 1390193.779 976703.1543 1297233.894 0.655363876 0.574339252 0.616923336 0.873591154 0.900569833 0.801050842 1.06310371 1.07166008 0.752912145 1 20.30700719 -5.327060325 2.921752194 0.933755499 0.60499103 0.678332221 0.097668204 0.156405561 2.624088763 0.029551159 0.049203361 4.71E-06 5.327060325 -0.328764469 RPTETNPVTSNS(ph)DEECNETVKEK ddPTM_HeLa_A486_30min_R1 3 RPTETNPVTSNSDEECNETVKEK 23 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RPTETNPVTSNS(1)DEECNETVKEK;RPTETNPVTSNS(1)DEECNETVKEK;RPTETNPVT(0.004)S(0.018)NS(0.979)DEECNETVKEK ;; 250.05 8.74E-50 1948470000 456557 421319 282192 322402 618090 586950 906150 930410 328718 822560 TRUE FALSE FALSE 424554.712 387932.148 391464.2998 750568.1493 540563.3887 514538.0767 679421.6857 718575.9537 357211.5409 616585.622 0.688557593 0.629161846 0.634890412 1.217297521 0.876704499 0.834495743 1.101909713 1.165411466 0.579338097 1 19.23394172 -5.229474585 24.73906928 0.970999697 0.648699018 0.413253638 0.173066993 563.3305232 435987.3273 0.045982347 0.07963458 5.90E-06 5.229474585 -0.322300679 RPTPNDDTLDEGVGLVHS(ph)NIATEHIPSPAK ddPTM_HeLa_A485_30min_R1 1 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHS(0.671)NIAT(0.134)EHIPS(0.195)PAK 272.67 1.90E-77 251200000 60035 53458 50072 67710 74243 67990 96133 91696 52793 96465 TRUE FALSE FALSE 73389.57863 59709.44808 68595.71647 71408.82585 66851.10624 71549.85127 75593.39922 69207.41223 63388.07085 72418.05081 1.013415548 0.824510566 0.947218486 0.986063903 0.923127666 0.988011283 1.043847471 0.955665217 0.875307608 1 16.14406173 -4.989939934 24.99394594 0.967692449 0.910688428 0.09029975 0.060198711 421.5889792 1047408.323 0.01543553 0.032073764 1.02E-05 4.989939934 -0.057004021 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAK ddPTM_HeLa_A485_30min_R1 4 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK ;;; 223.26 7.75E-39 11487540000 2288950 2123840 1889950 2915590 2819870 2946850 4143750 3737460 2114340 4430470 TRUE FALSE FALSE 2798119.031 2372204.613 2589121.152 3074861.299 2539113.842 3101142.509 3258403.961 2820842.075 2538668.644 3326035.366 0.841277594 0.713222907 0.778440656 0.924482443 0.763405545 0.932384105 0.97966606 0.848109465 0.763271693 1 21.66537208 -5.210601183 8.750228739 0.881530242 0.770844297 0.275430616 0.080924196 0.553750088 90.54848295 0.022009748 0.038124111 6.16E-06 5.210601183 -0.110685945 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAK ddPTM_HeLa_A486_30min_R1 5 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAK ;;;; 228.93 2.66E-39 19707700000 2964234 2954696 1922900 1353575 2915384 3346253 4111852 3937203 2393222 4623535 TRUE FALSE FALSE 2756456.504 2720555.128 2667498.377 3151191.006 2549709.354 2933426.327 3083023.139 3040787.825 2600668.41 3465771.742 0.795337001 0.784978161 0.769669377 0.909232125 0.735683 0.84639917 0.88956324 0.87737683 0.750386524 1 21.72474521 -14 0.193582413 1.76985338 0.789748855 0.465638615 0.058020236 123.838832 1.216665549 36.92274653 0.149755741 1.00E-14 14 -0.980104525 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK ddPTM_HeLa_A485_30min_R1 3 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK ;; 262.38 4.56E-64 10589370000 842527 670429 429295 1006822 793380 786457 1337623 1153562 573670 1387848 TRUE FALSE FALSE 1029944.224 748829.8396 588109.085 1061822.136 714388.3015 827634.6724 1051828.919 870649.1108 688800.307 1041883.035 0.988541122 0.718727357 0.564467474 1.019137562 0.685670346 0.794364285 1.009546065 0.835649571 0.661110973 1 19.99076189 -6.559957078 24.99806484 0.868462852 0.785599663 0.059397126 0.155035613 551.7061747 371953.7368 0.058835542 0.045573936 2.75E-07 6.559957078 -0.082863188 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK ddPTM_HeLa_A486_30min_R1 3 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHSNIAT(0.026)EHIPS(0.974)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK;RPTPNDDTLDEGVGLVHSNIATEHIPS(1)PAKK ;; 201.49 2.00E-29 5941770000 1877788 1628729 767884 898179 1522491 2055198 2697421 2437865 1373549 2859985 TRUE FALSE FALSE 1746164.758 1499662.582 1065229.249 2091006.103 1331525.982 1801648.566 2022497.735 1882816.358 1492609.333 2143826.141 0.814508567 0.699526213 0.496882293 0.975361791 0.621097932 0.840389308 0.943405669 0.87825049 0.696236185 1 21.03175648 -6.449955218 7.976485522 0.872519711 0.722286812 0.235337067 0.136568876 0.49737352 49.70112241 0.047435882 0.041678286 3.55E-07 6.449955218 -0.150232899 RPTSNGVVSS(ph)PNSTSRPTLPVK ddPTM_HeLa_A485_30min_R1 1 RPTSNGVVSSPNSTSRPTLPVK 22 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 RPTSNGVVS(0.064)S(0.936)PNSTSRPTLPVK 112.13 5.37E-05 855470000 440250 370570 402200 418940 594240 406510 480180 435520 413800 651590 TRUE FALSE FALSE 538182.0937 413904.938 550990.5169 441825.6314 535075.3791 427794.235 377585.6203 328708.0371 496845.8644 489160.6046 1.10021553 0.84615346 1.126400024 0.903232246 1.093864416 0.874547605 0.771905212 0.671983872 1.015711118 1 18.89994869 -6.433240295 6.26796414 0.835572349 1.004106222 0.241422057 0.125597198 0.299318272 17.23366023 0.04247807 0.037186583 3.69E-07 6.433240295 0.168533873 RPTSNGVVSS(ph)PNSTSRPTLPVK ddPTM_HeLa_A486_30min_R1 2 RPTSNGVVSSPNSTSRPTLPVK 22 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 RPTSNGVVS(0.249)S(0.75)PNS(0.001)TSRPTLPVK;RPTSNGVVS(0.019)S(0.981)PNSTSRPTLPVK ; 163.71 3.98E-14 1810720000 2105590 2156030 1582160 701450 2227560 2180580 2245940 2335070 1779900 2118140 TRUE FALSE FALSE 1957999.014 1985178.331 2194814.724 1633011.049 1948158.654 1911562.21 1683982.057 1803425.535 1934183.165 1587743.957 1.233195696 1.250313895 1.382348025 1.028510322 1.226997996 1.20394866 1.06061311 1.135841536 1.218195891 1 20.59854685 -1.000000419 0.038518338 0.505935836 2.256614956 0.366449192 0.088688459 900.141623 2.649081993 33.75538724 104.8951677 0.099999904 1.000000419 1.750679119 RPVLLLHPLGGWTK ddPTM_HeLa_A486_30min_R1 1 RPVLLLHPLGGWTK 14 1 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 0 123.02 5.30E-05 11533000 12080 13333 10735 5470.3 15148 15678 14700 15659 12925 17026 FALSE FALSE TRUE 11233.25438 12276.44452 14891.87949 12735.13485 13247.99659 13743.80776 11021.90452 12093.78753 14045.34941 12762.57878 0.880171208 0.961909402 1.166839379 0.997849657 1.038034461 1.076883285 0.863611086 0.947597483 1.1005103 1 13.63963225 -9.070259113 15.11076175 1 1.004498344 8.30E-05 0.09074103 0 0 0.089948757 0.021815778 8.51E-10 9.070259113 0.004498344 RPVS(ph)AIFTESIQPQKPGPGAAATVGK ddPTM_HeLa_A485_30min_R1 2 RPVSAIFTESIQPQKPGPGAAATVGK 26 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RPVS(0.993)AIFT(0.007)ESIQPQKPGPGAAATVGK;RPVS(1)AIFTESIQPQKPGPGAAATVGK ; 291.68 2.68E-90 1297720000 872910 722460 668230 964810 987880 958750 1207200 1097380 803250 1348310 TRUE FALSE FALSE 1067085.818 806945.4124 915436.0844 1017515.127 889523.1985 1008948.667 949271.8581 828245.8344 964454.9072 1012201.131 1.054223104 0.797218446 0.904401365 1.005249941 0.878800835 0.996786742 0.93782928 0.818262111 0.952829312 1 19.94906456 -2.165129378 13.75513697 0.927091881 0.933663004 0 0.080485786 0 0 0.017531841 0 0.006837079 2.165129378 0.006571123 RPVS(ph)AIFTESIQPQKPGPGAAATVGK ddPTM_HeLa_A486_30min_R1 3 RPVSAIFTESIQPQKPGPGAAATVGK 26 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RPVS(0.985)AIFT(0.015)ESIQPQKPGPGAAATVGK;RPVS(1)AIFTESIQPQKPGPGAAATVGK;RPVS(0.999)AIFTESIQPQKPGPGAAATVGK ;; 296.43 1.90E-90 2447600000 1137160 1130293 747566 442102 1143530 1223161 1431378 1449830 985854 1266002 TRUE FALSE FALSE 1057450.956 1040724.466 1037043.576 1029235.799 1000097.804 1072259.832 1073232.085 1119735.359 1071308.618 948986.8589 1.114294625 1.096668996 1.092790238 1.084562751 1.053858433 1.129899558 1.130924074 1.179927149 1.128897211 1 19.85602858 -6.30434208 24.81773792 1.126237214 1.088919268 0.039935279 0.045637805 887.4341991 513346.6495 0.015382132 0.013565826 4.96E-07 6.30434208 -0.037317946 RPWRPEEAVEDPDEEDEDNT(ph)SEAENGFSLEEVLR ddPTM_HeLa_A485_30min_R1 3 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 RPWRPEEAVEDPDEEDEDNT(0.5)S(0.5)EAENGFSLEEVLR;RPWRPEEAVEDPDEEDEDNT(0.781)S(0.219)EAENGFSLEEVLR;RPWRPEEAVEDPDEEDEDNT(0.5)S(0.5)EAENGFSLEEVLR ;; 256.13 6.49E-64 2038290000 118125 162434 165813 126632 190160 163703 183536 197745 150094 168525 TRUE FALSE FALSE 144401.4987 181429.2433 227154.1288 133549.5855 171227.0027 172274.2359 144322.0342 149247.7287 180216.4891 126514.819 1.141380116 1.434055273 1.79547448 1.055604289 1.353414597 1.361692151 1.140752012 1.179685747 1.424469406 1 16.94894686 -5.294275292 24.99964545 1.23259999 1.454678926 0.239634103 0.194798428 964.6312309 734420.4441 0.054639679 0.081049765 5.08E-06 5.294275292 0.222078936 RPWRPEEAVEDPDEEDEDNT(ph)SEAENGFSLEEVLR ddPTM_HeLa_A486_30min_R1 2 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 RPWRPEEAVEDPDEEDEDNT(0.5)S(0.5)EAENGFSLEEVLR;RPWRPEEAVEDPDEEDEDNT(0.5)S(0.5)EAENGFSLEEVLR ; 162.54 3.22E-14 1722430000 154666 154508 140523 58005 197887 148522 165123 174905 129754 181032 TRUE FALSE FALSE 143824.7121 142264.2234 194937.2689 135038.5714 173066.1672 130198.8657 123807.4789 135082.9496 141001.1812 135700.4089 1.059869409 1.048369895 1.436526762 0.995122804 1.275354796 0.959458168 0.912358923 0.995449835 1.039062316 1 17.05006554 -6.281675377 24.40567933 0.976674756 1.162541694 0.356970271 0.121910715 677.1164275 816635.2824 0.042130709 0.037203767 5.23E-07 6.281675377 0.185866938 RPWRPEEAVEDPDEEDEDNTS(ph)EAENGFSLEEVLR ddPTM_HeLa_A485_30min_R1 3 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 RPWRPEEAVEDPDEEDEDNT(0.052)S(0.948)EAENGFSLEEVLR;RPWRPEEAVEDPDEEDEDNT(0.041)S(0.959)EAENGFSLEEVLR;RPWRPEEAVEDPDEEDEDNT(0.25)S(0.75)EAENGFSLEEVLR ;; 297.83 1.90E-93 2200930000 196459 244068 202021 178011 237292 234035 259987 317007 193106 223170 TRUE FALSE FALSE 240160.6268 272609.6295 276756.9747 187735.2902 213666.3753 246288.7107 204438.6536 239260.5362 231860.6029 167537.8261 1.433471069 1.62715272 1.651907399 1.12055465 1.275332146 1.470048385 1.220253708 1.428098607 1.383929876 1 17.35412733 -12.28540595 0.068151008 2.24E-13 1.923741048 0.415093181 0.151598562 246.3008103 1.698717337 48.87592156 10.91293836 5.18E-13 12.28540595 1.923741048 RPWRPEEAVEDPDEEDEDNTS(ph)EAENGFSLEEVLR ddPTM_HeLa_A486_30min_R1 1 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 RPWRPEEAVEDPDEEDEDNT(0.038)S(0.962)EAENGFSLEEVLR 287.2 4.45E-79 371540000 119280 125500 108760 59095 152070 110770 130430 127280 114610 136500 TRUE FALSE FALSE 110919.088 115554.9229 150874.7847 137576.1465 132995.9626 97104.32363 97795.03445 98301.1225 124544.4871 102319.5115 1.084046301 1.129353739 1.474545592 1.344573918 1.299810374 0.949030367 0.955780896 0.96072705 1.217211509 1 16.64272176 -6.2566225 24.84288931 1.010297335 1.274747956 0.500925017 0.124511809 331.4088698 1709231.6 0.044738965 0.043389928 5.54E-07 6.2566225 0.264450621 RPYLGPALLLT(ph)PR ddPTM_HeLa_A485_30min_R1 1 RPYLGPALLLTPR 13 1 Q7Z5J4-3;Q7Z5J4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 RPYLGPALLLT(1)PR 71.781 0.0086544 164810000 118030 147250 126930 104260 161520 142770 157930 186590 118750 147620 TRUE FALSE FALSE 144285.3663 164469.6066 173886.689 109955.4598 145438.5017 150245.2164 124186.9653 140828.5099 142582.0358 110821.0507 1.301967138 1.484100769 1.569076343 0.992189291 1.31237252 1.355746182 1.120608084 1.270774 1.286597039 1 16.75787243 -3.032841439 0.032773882 5.54E-09 2.921290697 0.32259258 0.146799035 962.109665 3.562737293 113.1424907 219.067327 0.000927168 3.032841439 2.921290692 RPYLGPALLLT(ph)PR ddPTM_HeLa_A486_30min_R1 1 RPYLGPALLLTPR 13 1 Q7Z5J4-3;Q7Z5J4 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 RPYLGPALLLT(1)PR 101.67 0.00058196 192860000 175820 175000 155270 58405 223090 165310 176020 186890 153770 186350 TRUE FALSE FALSE 163495.9259 161132.3627 215394.7023 135969.7916 195107.972 144915.7329 131977.9343 144339.2268 167098.9074 139686.7471 1.170446942 1.153526487 1.541983809 0.97339078 1.396753637 1.037433658 0.944813571 1.033306522 1.196240237 1 17.09183562 -6.29805549 22.82734038 1.038343691 1.243178097 0.309097508 0.153022346 259.739997 161926.5908 0.052075125 0.045928631 5.03E-07 6.29805549 0.204834405 RPYTVILIER ddPTM_HeLa_A485_30min_R1 1 RPYTVILIER 10 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 0 108.56 0.0036637 16039000 13049 16207 17327 10768 19467 15052 14465 18497 14520 17370 FALSE FALSE TRUE 15951.70503 18102.26767 23736.97834 11356.22857 17528.79713 15840.09945 11374.43458 13960.58175 17434.03081 13039.97867 1.223292264 1.388212981 1.820323402 0.870877849 1.344235107 1.214733539 0.872274017 1.070598511 1.33696774 1 13.67065389 -5.272795163 24.99006808 1.109620904 1.468369913 0.404924664 0.208568918 747.2975176 1644536.054 0.059124497 0.088595223 5.34E-06 5.272795163 0.358749009 RPYTVILIER ddPTM_HeLa_A486_30min_R1 1 RPYTVILIER 10 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 0 80.69 0.029511 11689000 11133 9619.5 9107.5 4330.2 12850 8374.2 9875.1 11523 7870.6 11215 FALSE FALSE TRUE 10352.63419 8857.215786 12634.16791 10080.92444 11238.23318 7341.076347 7404.245532 8899.464445 8552.829945 8406.691003 1.231475522 1.053591215 1.5028705 1.199154868 1.336820061 0.873242081 0.880756237 1.058616814 1.017383646 1 13.03732233 -6.259468368 24.99977323 0.964335583 1.262630732 0.614178325 0.118395572 125.8375505 1596094.475 0.040697334 0.038751821 5.50E-07 6.259468368 0.298295149 RQAS(ph)ESSSRPH ddPTM_HeLa_A485_30min_R1 3 RQASESSSRPH 11 2 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 0 RQAS(1)ESSSRPH;RQAS(0.983)ES(0.013)S(0.002)S(0.002)RPH;RQAS(0.999)ES(0.001)SSRPH ;; 87.914 0.0021871 553040000 369160 432436 180309 333734 139938 442181 217270 423746 325798 279265 TRUE FALSE FALSE 451278.3684 483005.6285 247012.8024 351965.0434 126005.2814 465332.9134 170848.4896 319821.6291 391182.6702 209649.375 2.152538582 2.303873448 1.178218644 1.678827058 0.601028653 2.219576917 0.81492487 1.525507191 1.86588999 1 17.677619 -4.756487028 24.99596603 1.374706573 2.228206367 0.356381691 0.466121693 122.9823144 620707.6343 0.111891723 0.277189783 1.75E-05 4.756487028 0.853499794 RQAS(ph)ESSSRPH ddPTM_HeLa_A486_30min_R1 2 RQASESSSRPH 11 2 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 0 RQAS(0.998)ES(0.001)S(0.001)S(0.001)RPH;RQAS(0.999)ESSSRPH ; 85.271 0.0026759 186063000 106101.1 27213 160731.8 17217 53892 220655.9 62612.6 61978.2 180314.7 93698.6 TRUE FALSE FALSE 98663.9608 25056.54277 222971.4575 40082.0461 47132.36284 193433.6185 46946.26523 47867.11683 195944.5234 70235.86068 1.404751929 0.356748569 3.174609884 0.570677795 0.671058379 2.75405778 0.66840877 0.681519616 2.789807393 1 16.0999202 RQATVSWDSGGSDEAPPKPS(ph)RPGYPSPR ddPTM_HeLa_A485_30min_R1 1 RQATVSWDSGGSDEAPPKPSRPGYPSPR 28 3 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 RQATVSWDSGGSDEAPPKPS(0.879)RPGYPS(0.121)PR 152.84 1.28E-08 460800000 123970 184750 115350 138950 190350 190950 228020 296390 140670 198320 TRUE FALSE FALSE 151546.6988 206354.9054 158022.7651 146540.4867 171398.0856 200947.8467 179301.6642 223699.8878 168901.1787 148882.4738 1.01789482 1.386025501 1.061392661 0.984269558 1.151230775 1.349707871 1.204316799 1.502526671 1.134459781 1 17.18381441 -6.094267277 7.004487271 1.266731956 1.121045662 0.109127094 0.160681877 0.493847576 31.66879743 0.051796234 0.051950705 8.05E-07 6.094267277 -0.145686295 RQATVSWDSGGSDEAPPKPSRPGYPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RQATVSWDSGGSDEAPPKPSRPGYPSPR 28 3 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 RQATVSWDSGGSDEAPPKPSRPGYPS(1)PR;RQATVSWDSGGSDEAPPKPS(0.003)RPGYPS(0.997)PR ; 157.5 7.32E-10 727150000 332800 457840 368780 349230 505970 502700 582620 742590 361090 514010 TRUE FALSE FALSE 406830.2119 511380.4053 505207.0682 368307.5506 455593.8502 529020.5947 458138.4774 560468.6382 433557.4509 385876.7667 1.054300873 1.325242796 1.309244588 0.95446936 1.180671887 1.370957364 1.187266291 1.452454998 1.123564538 1 18.55778066 -6.032119328 24.74179258 1.255226681 1.168712575 0.022830837 0.15576519 1764.68999 1359352.407 0.050243856 0.050290516 9.29E-07 6.032119328 -0.086514106 RQATVSWDSGGSDEAPPKPSRPGYPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RQATVSWDSGGSDEAPPKPSRPGYPSPR 28 3 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 RQATVSWDSGGSDEAPPKPSRPGYPS(1)PR;RQATVSWDSGGSDEAPPKPS(0.087)RPGYPS(0.913)PR ; 142.6 3.13E-08 928550000 267990 258770 205064 98756 309690 258800 313220 326920 216331 322930 TRUE FALSE FALSE 249205.2849 238264.1228 284470.2726 229908.9589 270845.7925 226871.8873 234849.0431 252487.4526 235082.7453 242066.2261 1.029492172 0.984293128 1.175175394 0.949777103 1.118891292 0.937230654 0.970185089 1.043051138 0.971150536 1 17.88504228 -6.273505974 24.97912112 0.986130534 1.049007386 0.21307616 0.064435807 1281.80348 2653461.618 0.021709601 0.019293446 5.33E-07 6.273505974 0.062876852 RQDPQVVS(ph)PFSR ddPTM_HeLa_A485_30min_R1 2 RQDPQVVSPFSR 12 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 RQDPQVVS(0.998)PFS(0.002)R;RQDPQVVS(0.997)PFS(0.003)R ; 72.433 0.0063455 883900000 116320 124918 129864 83898 179843 132827 133575 194477 127839 83054 TRUE FALSE FALSE 142194.9827 139526.0735 177906.0977 88481.1353 161937.1995 139781.6163 105035.61 146781.2108 153495.1147 62350.1663 2.280587064 2.237781898 2.853337982 1.419100229 2.597221613 2.241880409 1.684608338 2.354143053 2.461823662 1 15.92810579 -10.77129226 2.72965299 0.708214676 2.228809598 0.470182786 0.393761818 37937739.77 29469042.12 74116849.39 0.094044278 1.69E-11 10.77129226 1.520594922 RQDPQVVS(ph)PFSR ddPTM_HeLa_A486_30min_R1 3 RQDPQVVSPFSR 12 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 RQDPQVVS(0.975)PFS(0.025)R;RQDPQVVS(0.999)PFS(0.001)R;RQDPQVVS(0.999)PFS(0.001)R ;; 70.802 0.0069265 805140000 150225 167338 155607 34537.4 212523 118579 109623 133231 121364 89156 TRUE FALSE FALSE 139695.0033 154077.5274 215862.1977 80404.81262 185866.3836 103949.9286 82194.16593 102897.2097 131883.9292 66830.75729 2.090280118 2.305488276 3.229982817 1.203110901 2.781150344 1.55542048 1.229885299 1.539668468 1.973401688 1 16.0282246 -6.37140969 7.05417238 1.470238228 2.307787533 0.392606561 0.536778851 0.285119065 16.19382116 0.184913483 0.162680878 4.25E-07 6.37140969 0.837549304 RQEMESGIT(ph)TPPK ddPTM_HeLa_A485_30min_R1 3 RQEMESGITTPPK 13 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 RQEMES(0.002)GIT(0.571)T(0.427)PPK;RQEMESGIT(0.605)T(0.395)PPK;RQEMESGIT(0.568)T(0.432)PPK ;; 85.16 0.0020618 568050000 808720 686190 578270 1109040 874310 792140 1069360 961570 744000 1464390 TRUE FALSE FALSE 988616.9739 766433.9514 792196.1368 1169624.047 787260.6265 833615.2255 840882.5001 725743.4498 893313.9756 1099344.523 0.899278573 0.697173575 0.720607708 1.063928571 0.716118205 0.758283876 0.764894428 0.660160154 0.812587826 1 20.06821215 -4.211543169 21.35730166 0.789539267 0.899281884 0.049238427 0.125344049 19563.9401 8372617.835 0.030592846 16.78001832 6.14E-05 4.211543169 0.109742617 RQEMESGIT(ph)TPPK ddPTM_HeLa_A486_30min_R1 1 RQEMESGITTPPK 13 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 RQEMESGIT(0.575)T(0.425)PPK 68.919 0.010064 380090000 206370 177790 112710 84677 190560 212180 214590 203060 159450 260100 TRUE FALSE FALSE 191904.5287 163701.2729 156354.3305 197132.3353 166658.1879 186003.3889 160897.3123 156827.6708 173271.2544 194969.267 0.984280916 0.839626036 0.80194347 1.011094407 0.854792093 0.95401389 0.825244485 0.804371238 0.8887106 1 17.5728872 -9.856320399 11.91061603 1.000003091 0.881862265 0.189762124 0.071103743 0 0 0.067993111 0.016490752 1.39E-10 9.856320399 -0.118140826 RQEMESGITT(ph)PPK ddPTM_HeLa_A486_30min_R1 2 RQEMESGITTPPK 13 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 RQEMESGIT(0.205)T(0.795)PPK;RQEMESGIT(0.159)T(0.841)PPK ; 123.02 3.02E-05 290800000 1606150 1540410 866880 700700 1341310 1574710 1901300 1800990 1254020 2195180 TRUE FALSE FALSE 1493567.179 1418342.302 1202559.152 1631265.011 1173070.393 1380438.291 1425574.63 1390943.892 1362719.463 1645492.64 0.907671747 0.861956029 0.730820134 0.991353575 0.712899204 0.838920976 0.866351265 0.845305448 0.828152877 1 20.65008814 -10.35367604 3.31534255 1.001142825 0.841114717 0.281467353 0.075410406 28537750.24 40553867.38 317724.5382 0.018018288 4.43E-11 10.35367604 -0.160028108 RQEQPSIES(ph)TSPISR ddPTM_HeLa_A485_30min_R1 1 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RQEQPSIES(0.893)T(0.017)S(0.09)PISR 135.98 5.42E-06 743440000 146100 232450 217510 139790 301040 216890 212010 274770 216110 238370 TRUE FALSE FALSE 178599.441 259633.0055 297976.0003 147426.3737 271067.4006 228246.025 166712.3315 207382.2267 259481.2947 178948.7459 0.998048017 1.450879156 1.665147184 0.823846923 1.514776755 1.275482675 0.931620564 1.158891758 1.450031368 1 17.44918691 -6.549793815 24.67546225 1.141973229 1.304411449 0.074987526 0.260811835 532.9623649 488609.2291 0.098694614 0.076450633 2.82E-07 6.549793815 0.16243822 RQEQPSIESTS(ph)PISR ddPTM_HeLa_A485_30min_R1 1 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RQEQPSIES(0.122)T(0.122)S(0.757)PISR 132.67 1.46E-05 0 150780 224560 216540 130520 236970 184730 236510 271200 216880 208160 TRUE FALSE FALSE 184320.4908 250820.3386 296647.157 137649.9771 213376.4347 194402.1772 185977.7064 204687.7748 260405.8267 156269.5429 1.179503615 1.605049416 1.898304375 0.880849682 1.365438401 1.244018339 1.190108469 1.309837931 1.666388868 1 17.2536771 -5.257015966 24.99772293 1.253305346 1.565362129 0.250529972 0.255868562 564.0864099 3187768.514 0.069715348 0.115646825 5.53E-06 5.257015966 0.312056783 RQEQPSIESTS(ph)PISR ddPTM_HeLa_A486_30min_R1 1 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RQEQPSIES(0.067)T(0.027)S(0.906)PISR 146.78 4.29E-08 756920000 395310 435840 396380 135230 535350 409060 436260 463110 340900 401400 TRUE FALSE FALSE 367600.8104 401302.4511 549868.9514 314822.2741 468201.4111 358594.3362 327103.1337 357669.9626 370449.4865 300886.8273 1.221724506 1.333732203 1.827494265 1.046314579 1.556071481 1.19179141 1.087130123 1.188719246 1.231192106 1 18.19886142 -6.429915466 6.813278252 1.14200459 1.397349229 0.294694866 0.200436696 0.343127886 21.46772344 0.069505794 0.060991934 3.72E-07 6.429915466 0.255344639 RQFS(ph)ALVPAFDPRPGR ddPTM_HeLa_A486_30min_R1 2 RQFSALVPAFDPRPGR 16 2 A0A087X2H1;Q9ULT8;H0YJD4;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 RQFS(1)ALVPAFDPRPGR;RQFS(1)ALVPAFDPRPGR ; 76.027 0.0042446 1176910000 259390 289390 290600 142635 379740 273110 347620 376440 237424 292770 TRUE FALSE FALSE 241208.1005 266457.6825 403128.1025 332061.4884 332109.4683 239416.465 260641.7993 290732.8296 258004.1035 219458.4864 1.099105824 1.214159848 1.836921913 1.513094772 1.5133134 1.090941931 1.187658785 1.324773694 1.175639674 1 17.74358853 -6.258407188 24.84880667 1.178092168 1.44966466 0.325581262 0.199329313 341.0903248 2795238.923 0.07214105 0.069185759 5.52E-07 6.258407188 0.271572492 RQFS(ph)APNLK ddPTM_HeLa_A485_30min_R1 3 RQFSAPNLK 9 1 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 RQFS(1)APNLK;RQFS(1)APNLK;RQFS(1)APNLK ;; 177.16 5.94E-07 4127500000 2530970 2929060 2299040 2626480 3421120 3086100 3828240 4467400 2683750 3482180 TRUE FALSE FALSE 3093975.545 3271588.088 3149550.567 2769957.952 3080501.281 3247683.424 3010305.25 3371763.145 3222354.008 2614136.611 1.183555416 1.251498515 1.204814834 1.059607191 1.178401032 1.242354134 1.15154856 1.289819029 1.232664733 1 21.31790311 -11.32407362 2.164389983 0.000116069 1.198848053 0.495645864 0.060329885 2231477.62 380400.8573 10849294.46 0.016976519 4.74E-12 11.32407362 1.198731984 RQFS(ph)APNLK ddPTM_HeLa_A486_30min_R1 4 RQFSAPNLK 9 1 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 RQFS(1)APNLK;RQFS(1)APNLK;RQFS(1)APNLK;RQFS(1)APNLK ;;; 156.52 2.01E-05 5579400000 6140500 5763000 4039980 2271010 6068700 5745700 6696500 6860100 4675050 6700300 TRUE FALSE FALSE 5710082.66 5306318.892 5604368.45 5287026.05 5307507.058 5036853.952 5020964.872 5298204.985 5080287.098 5022501.268 1.136900193 1.056509219 1.115852073 1.052667937 1.056745787 1.002857676 0.999694097 1.054893708 1.011505389 1 22.25997459 -5.6632065 1.349204411 1.016728118 1.101096824 0.676545301 0.025892362 0.262072852 0.991635352 0.009488025 0.014759172 2.17E-06 5.6632065 0.084368707 RQGS(ph)FSEDVISHK ddPTM_HeLa_A485_30min_R1 1 RQGSFSEDVISHK 13 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RQGS(0.999)FS(0.001)EDVISHK 177.67 3.47E-13 250150000 205110 194260 196450 237430 275110 218330 276220 249670 224610 316680 TRUE FALSE FALSE 250736.0119 216977.0172 269125.03 250400.1997 247719.0824 229761.4212 217203.3405 188438.041 269687.1668 237737.5041 1.054675882 0.91267475 1.132025976 1.053263349 1.041985712 0.966450044 0.913626739 0.792630686 1.134390503 1 17.85900999 -6.354705762 3.940539766 0.942746922 1.038006127 0.134185694 0.094110492 0.417341523 11.8208953 0.03388205 0.02974342 4.42E-07 6.354705762 0.095259206 RQGS(ph)FSEDVISHK ddPTM_HeLa_A486_30min_R1 1 RQGSFSEDVISHK 13 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RQGS(0.903)FS(0.097)EDVISHK 197.69 1.33E-21 877100000 838420 906480 631700 300530 1072900 954420 1085800 1080600 800330 1118200 TRUE FALSE FALSE 779651.0876 834647.2235 876311.1575 699649.0279 938326.8776 836673.3642 814121.3556 834570.9693 869703.2488 838195.4417 0.930154292 0.995766837 1.045473542 0.834708701 1.119460726 0.998184102 0.971278672 0.995675862 1.037590048 1 19.67692715 -5.77747874 24.99997814 1.016585293 0.961396394 0.21664544 0.062772841 467.5430629 728739.9593 0.019345046 0.022003243 1.67E-06 5.77747874 -0.055188899 RQGS(ph)FSEDVISHKGDLR ddPTM_HeLa_A485_30min_R1 1 RQGSFSEDVISHKGDLR 17 2 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RQGS(0.999)FS(0.001)EDVISHKGDLR 224.57 1.23E-34 215840000 165450 427450 234070 65736 279030 443330 508190 1020600 185090 116530 TRUE FALSE FALSE 202253.7817 477436.5592 320662.2335 69326.99123 251248.7935 466542.0733 399611.055 770296.2498 222235.8653 87481.21558 2.311968122 5.45758945 3.665498146 0.7924786 2.872031348 5.333054304 4.567964132 8.805276021 2.540383827 1 16.41668565 -6.257763344 24.37422005 4.94457971 3.067458992 0.074057907 2.199828727 458.0839692 3037362.99 0.729179392 0.701847792 5.52E-07 6.257763344 -1.877120718 RQGS(ph)FSEDVISHKGDLR ddPTM_HeLa_A486_30min_R1 1 RQGSFSEDVISHKGDLR 17 2 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RQGS(0.996)FS(0.004)EDVISHKGDLR 82.635 0.0011222 151600000 179620 100120 75881 35080 158960 67004 120840 135260 56682 144260 TRUE FALSE FALSE 167029.5656 92186.12657 105264.1554 81668.01285 139021.7546 58737.72773 90604.55388 104464.2507 61595.2414 108136.357 1.544619868 0.852498911 0.973439075 0.755231775 1.285615295 0.543182047 0.837873185 0.96604189 0.569607143 1 16.72249213 -4.260726908 24.2344876 0.865995335 1.544620175 0.4970126 0.205155452 31.44419117 1069227.294 0.048354225 0.281105273 5.49E-05 4.260726908 0.678624839 RQGS(ph)VVSSR ddPTM_HeLa_A485_30min_R1 2 RQGSVVSSR 9 1 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 RQGS(0.341)VVS(0.329)S(0.329)R;RQGS(0.607)VVS(0.381)S(0.012)R ; 83.045 0.016494 175796000 222058 321060 328060 194710 309930 268579 253340 317670 234473 247970 TRUE FALSE FALSE 271454.036 358605.1741 449423.0457 205346.5143 279072.281 282641.3811 199211.8394 239760.9344 281529.5804 186155.6425 1.458210089 1.926372842 2.414232733 1.103090465 1.49913415 1.518306817 1.070135918 1.287959533 1.512334391 1 17.50614982 -5.278079379 24.99965123 1.306184166 1.932282027 0.532389011 0.277997519 630.0555202 946583.2017 0.0786155 0.116966974 5.27E-06 5.278079379 0.626097862 RQGSFS(ph)EDVISHK ddPTM_HeLa_A486_30min_R1 2 RQGSFSEDVISHK 13 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5;E9PNZ4 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RQGS(0.278)FS(0.722)EDVISHK;RQGS(0.397)FS(0.603)EDVISHK ; 194.32 4.28E-18 861798000 894282 892490 723878 334609 1007866 998332 1114786 1118752 832904 1056244 TRUE FALSE FALSE 831597.4499 821765.842 1004182.948 778986.6622 881450.0483 875167.9481 835854.7518 864036.5918 905100.7893 791753.6274 1.050323511 1.037906002 1.268302301 0.983875078 1.113288298 1.105353885 1.055700565 1.091294769 1.143159637 1 19.59469205 -10.01277502 4.22548506 0.999993929 1.094215678 0.133617804 0.072078973 9617586.44 11399210.31 429.4815106 0.016691048 9.71E-11 10.01277502 0.094221749 RQGSVVS(ph)SR ddPTM_HeLa_A486_30min_R1 1 RQGSVVSSR 9 1 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 RQGS(0.085)VVS(0.458)S(0.458)R 95.483 0.007146 26687000 52292 48987 47942 17229 62018 49679 48715 52144 50061 48100 TRUE FALSE FALSE 48626.60084 45105.09171 66506.42633 40109.98271 54239.12415 43550.11008 36525.99175 40271.9495 54400.32779 36055.44692 1.348661714 1.250992445 1.844559755 1.112452795 1.504325387 1.207864936 1.013050589 1.116944954 1.50879638 1 15.1379296 -6.381885094 5.681995592 1.162104809 1.409832004 0.234189723 0.220575097 0.36188652 15.42013975 0.077264918 0.067767964 4.15E-07 6.381885094 0.247727195 RQGSVVSS(ph)R ddPTM_HeLa_A485_30min_R1 1 RQGSVVSSR 9 1 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 RQGS(0.322)VVS(0.218)S(0.461)R 90.827 0.0091843 90381000 112380 152320 154090 92158 145420 120030 126100 156800 112290 117980 TRUE FALSE FALSE 137378.5433 170132.499 211094.3032 97192.35818 130941.4742 126314.5852 99157.70486 118344.5541 134825.573 88569.75726 1.551077338 1.920887042 2.383367752 1.097353783 1.47839938 1.426159325 1.1195436 1.336173405 1.522252936 1 16.43452654 -5.274302417 24.95017608 1.304163449 1.948688365 0.605161962 0.247186732 497.4964801 964982.9863 0.069299958 0.103537766 5.32E-06 5.274302417 0.644524916 RQGSVVSS(ph)R ddPTM_HeLa_A486_30min_R1 1 RQGSVVSSR 9 1 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 RQGS(0.045)VVS(0.317)S(0.638)R 86.898 0.010904 66496000 134100 121270 120490 45927 164000 125990 121460 126720 122040 119080 TRUE FALSE FALSE 124700.2825 111660.1235 167146.9548 106920.377 143429.5908 110446.6348 91069.42333 97868.62228 132618.5255 89261.59292 1.397020582 1.250931334 1.872551781 1.197831828 1.606845521 1.237336587 1.020253172 1.096424779 1.485728869 1 16.44575193 -6.444585211 6.037303287 1.154418653 1.459527364 0.32800433 0.215274154 0.281547103 17.16831564 0.074753754 0.065242477 3.59E-07 6.444585211 0.305108711 RQHRDS(ph)PEILSR ddPTM_HeLa_A486_30min_R1 1 RQHRDSPEILSR 12 2 Q96Q42 Q96Q42 ALS2 Alsin 1 0 RQHRDS(1)PEILSR 142.54 1.03E-07 275700000 76358 69267 74216 24903 115480 69260 84914 90976 78570 85455 TRUE FALSE FALSE 71005.69851 63778.03065 102954.4228 57975.44253 100995.4216 60715.40538 63667.61907 70262.75079 85380.51086 64056.51178 1.108485251 0.995652571 1.607243665 0.905067118 1.576661276 0.947841269 0.993928912 1.096886934 1.332893542 1 15.96705762 RQKIEMWDS(ph)MQEGK ddPTM_HeLa_A485_30min_R1 1 RQKIEMWDSMQEGK 14 2 A0A182DWI4;E9PN30;Q9BQE4 A0A182DWI4 VIMP Selenoprotein S 1 0 RQKIEMWDS(1)MQEGK 53.565 0.020193 294760000 591790 319230 241500 821040 452920 451710 630200 479540 394570 1048600 TRUE FALSE FALSE 723431.6438 356561.1716 330840.8997 865891.3362 407825.6945 475360.8371 495552.6217 361932.0631 473756.5798 787203.3181 0.918989576 0.452946734 0.420273762 1.099958951 0.518069075 0.603860307 0.629510332 0.459769484 0.601822387 1 19.58637678 -10.27266367 5.192111494 1.000062505 0.626470308 0.221145325 0.20568287 0.000145975 2.04E-05 0.195345738 0.047370401 5.34E-11 10.27266367 -0.373592197 RQLAELETEDGMQES(ph)P ddPTM_HeLa_A485_30min_R1 1 RQLAELETEDGMQESP 16 1 Q96QG7-2;Q96QG7 Q96QG7-2 MTMR9 Myotubularin-related protein 9 1 0 RQLAELETEDGMQES(1)P 91.616 0.0025993 210120000 202030 195220 137320 250070 284110 226560 312970 353680 186690 379710 TRUE FALSE FALSE 246970.8765 218049.2808 188120.3824 263730.6909 255823.0108 238422.3313 246101.4028 266939.4255 224156.9706 285055.285 0.866396413 0.764936811 0.659943499 0.925191374 0.89745051 0.836407335 0.86334622 0.936447908 0.786363145 1 18.12088222 -13.99999817 0.05589443 1.615114921 0.55955534 0.30999806 0.076935781 555.3436376 2.274576679 48.34452019 9.071004291 1.00E-14 13.99999817 -1.055559581 RQLAELETEDGMQES(ph)P ddPTM_HeLa_A486_30min_R1 1 RQLAELETEDGMQESP 16 1 Q96QG7-2;Q96QG7 Q96QG7-2 MTMR9 Myotubularin-related protein 9 1 0 RQLAELETEDGMQES(1)P 63.46 0.0075193 0 111240 158270 110080 44657 170080 130360 129820 157800 94569 137730 TRUE FALSE FALSE 103442.6504 145728.1088 152705.924 103963.7528 148746.9805 114277.5086 97337.6629 121872.3847 102766.3171 103241.5115 1.001948237 1.4115263 1.479113603 1.006995648 1.440767171 1.106894958 0.942815167 1.180459129 0.995397254 1 16.65566364 -6.504683086 22.42803839 1.041870243 1.273317609 0.324590243 0.163399313 237.4107424 292635.0405 0.056747298 0.048967593 3.13E-07 6.504683086 0.231447366 RQLEEAEEESQR ddPTM_HeLa_A485_30min_R1 1 RQLEEAEEESQR 12 1 P35749-4;P35749-3;P35749;P35749-2 P35749-4 MYH11 Myosin-11 0 0 151.7 2.65E-07 348360000 219640 188420 155110 344030 233520 268940 460350 451900 200440 485220 FALSE FALSE TRUE 268498.1603 210454.08 212491.6437 362823.4878 210269.9289 283021.2825 361992.4618 341070.8164 240666.4695 364263.5838 0.737098552 0.577752181 0.583345833 0.996046555 0.577246637 0.776968369 0.993765169 0.936329712 0.660693191 1 18.47462325 -5.085756673 0.202876051 1.001906905 0.41257896 0.271871227 0.148245911 13.129627 0.709175902 0.37070486 2.014496662 8.21E-06 5.085756673 -0.589327945 RQLEEAEEESQR ddPTM_HeLa_A486_30min_R1 2 RQLEEAEEESQR 12 1 P35749-4;P35749-3;P35749;P35749-2 P35749-4 MYH11 Myosin-11 0 0 ; ; 164.13 7.68E-08 435310000 398170 388530 374950 265340 536920 425610 418980 467270 343120 580040 FALSE FALSE TRUE 370260.3392 357741.4678 520140.6815 617724.9295 469574.487 373102.5655 314146.7725 360882.8214 372861.9179 434794.2086 0.85157606 0.822783424 1.196291651 1.420729433 1.079992506 0.858113006 0.7225183 0.830008345 0.857559532 1 18.7299732 -6.275184766 5.742075628 0.833425615 1.086957719 0.291799807 0.170130091 0.22743584 28.76558105 0.066446133 0.061034445 5.31E-07 6.275184766 0.253532104 RQLHLEGAS(ph)LELS(ph)DDDTESK ddPTM_HeLa_A486_30min_R1 1 RQLHLEGASLELSDDDTESK 20 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 2 0 RQLHLEGAS(0.998)LELS(0.94)DDDT(0.057)ES(0.005)K 47.018 0.020976 56913000 73235 72636 37726 38714 69469 105410 129330 138440 71402 169130 TRUE FALSE FALSE 68101.60469 66880.05882 52334.51754 90128.1485 60755.55025 92405.58593 96970.26609 106920.2341 77591.18285 126778.7471 0.537168936 0.527533678 0.412801978 0.71090897 0.479225041 0.728872844 0.764877933 0.843360867 0.612020426 1 16.95195339 -7.140246431 0.180895993 1.1198822 0.311792336 0.64503101 0.1025475 2.210774946 0.37288433 0.603372649 0.747087766 7.24E-08 7.140246431 -0.808089864 RQLHLEGASLELS(ph)DDDTESK ddPTM_HeLa_A485_30min_R1 2 RQLHLEGASLELSDDDTESK 20 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 RQLHLEGASLELS(1)DDDTESK;RQLHLEGASLELS(1)DDDTESK ; 207.55 1.33E-26 2964400000 607640 610700 390906 795360 677650 597770 970870 777610 498880 1254730 TRUE FALSE FALSE 742807.4217 682116.0526 535518.3964 838808.5028 610180.7866 629068.3129 763435.6932 586899.9283 599000.64 941948.9026 0.788585686 0.724153986 0.568521705 0.89050319 0.647785442 0.667836983 0.810485252 0.623069815 0.635916278 1 19.84528928 -10.32665672 6.118117151 1.000022325 0.70596857 0.469684791 0.093618119 2.76E-05 3.04E-06 0.087703912 0.02126971 4.71E-11 10.32665672 -0.294053755 RQLHLEGASLELS(ph)DDDTESK ddPTM_HeLa_A486_30min_R1 2 RQLHLEGASLELSDDDTESK 20 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 RQLHLEGASLELS(1)DDDTESK;RQLHLEGASLELS(1)DDDTESK ; 283.81 5.25E-73 2616700000 1279680 1112780 581420 365700 988640 1212280 1562910 1387090 997960 1761860 TRUE FALSE FALSE 1189981.04 1024599.26 806561.395 851368.0815 864635.5525 1062721.219 1171853.387 1071279.887 1084463.976 1320678.788 0.901037444 0.775812612 0.610717309 0.644644322 0.65469027 0.80467804 0.887311432 0.811158547 0.82114136 1 20.33284819 -6.481610704 4.718507423 0.862799284 0.711191025 0.412201401 0.090487687 0.235811562 12.16130994 0.035552291 0.029998547 3.30E-07 6.481610704 -0.151608259 RQLHLEGASLELS(ph)DDDTESKTSDVNETQPPQSE ddPTM_HeLa_A485_30min_R1 1 RQLHLEGASLELSDDDTESKTSDVNETQPPQSE 33 2 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 RQLHLEGAS(0.022)LELS(0.941)DDDT(0.025)ES(0.007)KT(0.002)S(0.002)DVNETQPPQSE 62.16 0.0041086 596910000 114460 197010 127540 131650 309110 272180 475510 639240 158940 225030 TRUE FALSE FALSE 139921.2321 220048.6057 174722.3534 138841.7061 278333.923 286430.9239 373913.4039 482465.3877 190837.8001 168934.1624 0.828258951 1.3025702 1.034262999 0.821868734 1.647588144 1.695518064 2.213367614 2.855937372 1.129657835 1 17.36610158 -5.954812015 2.931150674 1.91633285 1.021577469 0.324783577 0.515748672 0.274719291 4.817105687 0.171286202 0.191500874 1.11E-06 5.954812015 -0.89475538 RQLLS(ph)LLR ddPTM_HeLa_A485_30min_R1 1 RQLLSLLR 8 1 A0A0B4J229 A0A0B4J229 ADAMTS13 1 0 RQLLS(1)LLR 78.098 0.02844 389910000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RQLLS(ph)LLR ddPTM_HeLa_A486_30min_R1 1 RQLLSLLR 8 1 A0A0B4J229 A0A0B4J229 ADAMTS13 1 0 RQLLS(1)LLR 78.098 0.02844 343780000 236140 248230 239770 85322 313060 204240 239030 261480 188690 247250 TRUE FALSE FALSE 219587.8054 228559.3508 332615.3653 198633.9279 273793.0956 179042.9454 179222.1658 201946.7121 205045.8011 185336.9907 1.184802908 1.233209571 1.794651807 1.071744649 1.477271723 0.966039994 0.967006992 1.08961903 1.106340404 1 17.49979133 -6.268079759 24.64224435 1.027727817 1.354702669 0.431914009 0.187227642 431.8947447 1602743.492 0.064588338 0.058280426 5.39E-07 6.268079759 0.326974851 RQLQEDQENNLQDNQTSNSS(ph)PCR ddPTM_HeLa_A485_30min_R1 1 RQLQEDQENNLQDNQTSNSSPCR 23 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 RQLQEDQENNLQDNQTSNS(0.206)S(0.794)PCR 140.26 9.21E-12 0 38037 70904 64029 42011 75529 57043 67192 72112 59510 55312 TRUE FALSE FALSE 46498.19942 79195.60602 87715.99157 44305.95455 68009.06756 60029.68327 52835.88029 54426.41893 71453.11114 41523.73634 1.119798061 1.907236992 2.112430125 1.06700308 1.637835936 1.445671526 1.272425965 1.310730289 1.720777498 1 15.34164864 -5.268418 24.99898368 1.376249871 1.732563255 0.213684132 0.315358014 836.4395102 2996313.278 0.086775231 0.131918714 5.39E-06 5.268418 0.356313384 RQLS(ph)APHITR ddPTM_HeLa_A485_30min_R1 1 RQLSAPHITR 10 1 A6ND36;A6ND36-2;K7EKG0 A6ND36 FAM83G Protein FAM83G 1 0 RQLS(0.988)APHIT(0.012)R 67.095 0.0095402 109490000 21281 48503 41676 21419 41612 33898 42771 48265 41504 37698 TRUE FALSE FALSE 26014.88503 54175.00393 57093.68668 22589.06573 37468.96317 35672.84686 33632.62644 36427.93307 49833.4721 28300.58238 0.919234971 1.9142717 2.017403243 0.798183777 1.323964386 1.260498685 1.188407574 1.287179627 1.760863838 1 14.78854412 -5.254594296 24.94630089 1.246555996 1.646700099 0.194510287 0.357180506 853.2488776 3109581.962 0.096717476 0.162854476 5.56E-06 5.254594296 0.400144103 RQLS(ph)APHITR ddPTM_HeLa_A486_30min_R1 2 RQLSAPHITR 10 1 A6ND36;A6ND36-2;K7EKG0 A6ND36 FAM83G Protein FAM83G 1 0 RQLS(0.998)APHIT(0.002)R;RQLS(1)APHITR ; 108.23 0.00048934 220716000 106049 108922 109782 30905 151370 88513 120909 128775 95506 115701 TRUE FALSE FALSE 98615.51274 100290.624 152292.5305 71948.40185 132383.7631 77593.16599 90656.28936 99455.74364 103784.537 86728.71651 1.137057214 1.156371593 1.755964306 0.829579922 1.52641211 0.894665217 1.045285725 1.146745249 1.19665713 1 16.40422214 -6.275469433 24.96592314 1.0651307 1.275448419 0.176828997 0.24159117 1517.504446 2700330.619 0.082113546 0.072775873 5.30E-07 6.275469433 0.210317719 RQLS(ph)HDHESVGPPSLDAQPNSK ddPTM_HeLa_A485_30min_R1 2 RQLSHDHESVGPPSLDAQPNSK 22 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 RQLS(0.873)HDHES(0.127)VGPPSLDAQPNSK;RQLS(0.983)HDHES(0.017)VGPPSLDAQPNSK ; 196.62 3.29E-21 986480000 356090 593310 490250 206807 724070 526460 593990 826100 540840 456350 TRUE FALSE FALSE 435300.992 662692.4434 671613.876 218104.3427 651979.0484 554024.6315 467079.184 623497.6797 649381.6271 342590.3435 1.270616642 1.934358209 1.960399319 0.636633072 1.903086473 1.617163595 1.363375217 1.819951121 1.895504761 1 18.38612496 RQLS(ph)PQSK ddPTM_HeLa_A485_30min_R1 4 RQLSPQSK 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RQLS(1)PQSK;RQLS(0.998)PQS(0.002)K;RQLS(0.995)PQS(0.005)K;RQLS(1)PQSK ;;; 92.943 0.0020267 4951530000 1538210 1794470 1323580 1822500 1774180 1992130 2480040 2909840 1691540 2220600 TRUE FALSE FALSE 1880379.508 2004317.657 1813227.321 1922058.56 1597536.41 2096434.846 1950159.194 2196197.178 2031016.562 1667045.287 1.127971461 1.202317461 1.0876893 1.152973213 0.958304146 1.257575222 1.169829763 1.317419025 1.218333166 1 20.66886187 RQLS(ph)PQSK ddPTM_HeLa_A486_30min_R1 5 RQLSPQSK 8 1 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RQLS(0.998)PQS(0.002)K;RQLS(1)PQSK;RQLS(0.999)PQS(0.001)K;RQLS(1)PQSK;RQLS(1)PQSK ;;;; 88.155 0.0027086 3472260000 2101080 1677210 1338920 807145 1896000 2226100 2438430 2037980 1709490 2367020 TRUE FALSE FALSE 1953805.142 1544301.771 1857385.682 1879074.351 1658186.001 1951466.415 1828309.023 1573976.443 1857669.97 1774302.785 1.101167827 0.870371046 1.046825658 1.059049429 0.934556387 1.099849716 1.030438005 0.88709574 1.046985884 1 20.7588208 RQPPVS(ph)PLTLSPGPEAHQGFSR ddPTM_HeLa_A485_30min_R1 2 RQPPVSPLTLSPGPEAHQGFSR 22 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 RQPPVS(1)PLTLSPGPEAHQGFSR;RQPPVS(1)PLTLSPGPEAHQGFSR ; 169.57 4.45E-14 605040000 88648 154961 139470 78388 169804 142888 138886 151064 118876 122280 TRUE FALSE FALSE 108367.4418 173082.341 191065.7568 82670.13795 152897.7175 150369.3947 109211.8715 114015.3171 142733.3228 91797.8464 1.180500916 1.885472784 2.081375156 0.900567292 1.665591553 1.638049264 1.189699713 1.242026056 1.554865701 1 16.48617269 -8.321936967 0.209424135 0.824321852 1.723710768 0.17475091 0.335813621 8.548698696 1.098167784 2.483310506 1.223561494 4.77E-09 8.321936967 0.899388916 RQPPVS(ph)PLTLSPGPEAHQGFSR ddPTM_HeLa_A486_30min_R1 2 RQPPVSPLTLSPGPEAHQGFSR 22 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 RQPPVS(1)PLTLSPGPEAHQGFSR;RQPPVS(0.912)PLT(0.082)LS(0.005)PGPEAHQGFSR ; 200.48 7.24E-27 541370000 112332 137446 135210 21826.2 154905 101844 123926 117234 116553 94829 TRUE FALSE FALSE 104458.1069 126554.2784 187566.933 50812.49664 135475.3705 89279.52275 92918.40404 90542.3774 126655.9079 71083.20117 1.46951889 1.780368305 2.638695641 0.714831293 1.90587042 1.255986243 1.307178103 1.273752109 1.781798031 1 16.11722103 -5.264757806 24.99691588 1.35254317 1.944611655 0.326479214 0.421120556 353.8292917 2665316.594 0.113685534 0.176726257 5.44E-06 5.264757806 0.592068485 RQPPVSPLTLS(ph)PGPEAHQGFSR ddPTM_HeLa_A485_30min_R1 4 RQPPVSPLTLSPGPEAHQGFSR 22 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 RQPPVSPLT(0.026)LS(0.974)PGPEAHQGFSR;RQPPVSPLT(0.004)LS(0.996)PGPEAHQGFSR;RQPPVSPLT(0.002)LS(0.998)PGPEAHQGFSR;RQPPVSPLT(0.02)LS(0.98)PGPEAHQGFSR ;;; 277.75 4.44E-73 3056130000 394013 587949 530638 359241 655294 441209 519554 534371 450051 492982 TRUE FALSE FALSE 481659.8325 656704.5211 726943.0779 378865.4262 590050.6285 464310.021 408547.0435 403315.6744 540372.1076 370090.6601 1.301464437 1.774442297 1.964229732 1.023709775 1.594340771 1.254584541 1.103910711 1.089775339 1.46010739 1 18.4975192 -5.266372621 24.99992181 1.234245706 1.689485171 0.44721249 0.234821945 376.203707 1906469.193 0.065464406 0.100590022 5.42E-06 5.266372621 0.455239465 RQPPVSPLTLS(ph)PGPEAHQGFSR ddPTM_HeLa_A486_30min_R1 3 RQPPVSPLTLSPGPEAHQGFSR 22 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 RQPPVSPLT(0.001)LS(0.999)PGPEAHQGFSR;RQPPVSPLT(0.258)LS(0.742)PGPEAHQGFSR;RQPPVSPLT(0.015)LS(0.985)PGPEAHQGFSR ;; 248.73 2.66E-47 1968220000 316829 273358 245273 53614 366061 248782 276993 286807 267353 268483 TRUE FALSE FALSE 294620.9232 251696.1165 340249.2742 124816.1015 320146.216 218089.8063 207686.4217 221507.3071 290527.3733 201253.1093 1.46393228 1.250644611 1.690653503 0.620194649 1.590764074 1.083659314 1.031966276 1.100640422 1.443591974 1 17.61865155 -5.207414531 24.99994859 1.142475373 1.446633324 0.259000864 0.264648778 476.7657515 220622.0155 0.068051848 0.117869166 6.20E-06 5.207414531 0.304157951 RQPS(ph)MSETMPLYTLCK ddPTM_HeLa_A485_30min_R1 2 RQPSMSETMPLYTLCK 16 1 K7EJD2;A0A0A0MR03;Q9Y5B0 K7EJD2 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 RQPS(0.994)MS(0.006)ETMPLYTLCK;RQPS(0.937)MS(0.063)ETMPLYTLCK ; 260.24 6.59E-51 882730000 1053640 1083720 1015030 1115670 1368550 1034220 1258690 1104950 1112470 1518310 TRUE FALSE FALSE 1288018.583 1210451.627 1390531.836 1176616.227 1232292.357 1088370.16 989760.5989 833959.28 1335732.525 1139823.259 1.130016055 1.061964315 1.219953905 1.032279538 1.081125821 0.954858704 0.868345676 0.731656661 1.17187688 1 20.12037871 -6.191875918 2.104022009 0.919054446 1.1152988 0.325787535 0.113571813 0.346766718 3.016376159 0.043037732 0.041491137 6.43E-07 6.191875918 0.196244354 RQPS(ph)MSETMPLYTLCK ddPTM_HeLa_A486_30min_R1 2 RQPSMSETMPLYTLCK 16 1 K7EJD2;A0A0A0MR03;Q9Y5B0 K7EJD2 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 RQPS(0.741)MS(0.251)ET(0.009)MPLYTLCK;RQPS(0.991)MS(0.006)ET(0.003)MPLYTLCK ; 224.36 3.83E-34 1315750000 1186250 1285950 956250 412680 1306790 1320570 1351590 1340720 1095740 1347540 TRUE FALSE FALSE 1103100.001 1184046.639 1326535.609 960739.8957 1142880.213 1157651.5 1013407.886 1035467.324 1190719.625 1010107.213 1.092062295 1.172198974 1.313262189 0.951126656 1.131444463 1.146067947 1.003267647 1.025106355 1.17880519 1 19.946077 -5.263326964 24.99828607 1.067222553 1.190476929 0.330636942 0.084704562 207.0057408 2741499.023 0.023503515 0.036989422 5.45E-06 5.263326964 0.123254376 RQPSMS(ph)ETMPLYTLCK ddPTM_HeLa_A485_30min_R1 1 RQPSMSETMPLYTLCK 16 1 K7EJD2;A0A0A0MR03;Q9Y5B0 K7EJD2 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 RQPS(0.386)MS(0.513)ET(0.101)MPLYTLCK 82.586 0.0016829 112870000 7259.1 6694.3 5115.4 10470 7701.6 11638 9669.8 9678.2 9310.9 10391 TRUE FALSE FALSE 8873.861751 7477.140152 7007.79933 11041.94959 6934.801662 12247.34768 7603.768235 7304.606275 11179.51223 7800.714932 1.137570316 0.958519856 0.89835347 1.41550482 0.888995653 1.570028874 0.974752738 0.936402155 1.433139439 1 12.92939064 -5.214405667 24.99980609 1.167777621 0.9941851 0.11041336 0.228313126 945.8369827 502738.6252 0.059201418 0.102539523 6.10E-06 5.214405667 -0.173592521 RQPVS(ph)PPPPPRPIS(ph)PPHTYGYISGPLVSDMDTDAPEEEEDEADMEVAK ddPTM_HeLa_A485_30min_R1 2 RQPVSPPPPPRPISPPHTYGYISGPLVSDMDTDAPEEEEDEADMEVAK 48 2 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;Q9Y6N7-6;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 2 0 RQPVS(0.998)PPPPPRPIS(0.843)PPHT(0.021)Y(0.069)GY(0.069)ISGPLVSDMDTDAPEEEEDEADMEVAK;RQPVS(0.825)PPPPPRPIS(0.303)PPHT(0.303)Y(0.282)GY(0.282)IS(0.006)GPLVS(0.001)DMDTDAPEEEEDEADMEVAK ; 168.88 1.00E-18 417890000 27849 24524 13848.9 29179 24443 28727 34830 35478 24536 64637 TRUE FALSE FALSE 34043.91397 27391.86847 18972.18441 30772.97488 22009.3691 30231.1013 27388.28597 26776.96487 29460.15014 48524.18546 0.701586511 0.564499295 0.390984088 0.634178082 0.453575241 0.623011 0.564425466 0.551827189 0.607123023 1 15.56641638 -8.891665692 1.036272618 1.002942746 0.553840815 0.709684824 0.083682196 3.342085401 3.411268971 0.106775427 0.024829613 1.28E-09 8.891665692 -0.44910193 RQQPPLGPSSS(ph)LLSLPGLK ddPTM_HeLa_A485_30min_R1 2 RQQPPLGPSSSLLSLPGLK 19 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 RQQPPLGPS(0.029)S(0.127)S(0.844)LLSLPGLK;RQQPPLGPS(0.051)S(0.196)S(0.752)LLSLPGLK ; 144.76 1.37E-08 281900000 364050 435820 331590 355930 483970 493210 589380 669690 381560 570360 TRUE FALSE FALSE 445031.6665 486785.3579 454258.9396 375373.5546 435784.2475 519033.713 463454.1482 505447.4775 458135.5921 428179.7487 1.039357111 1.136871511 1.06090711 0.876672836 1.017760062 1.212186505 1.082382223 1.18045629 1.069960907 1 18.70785704 -6.205753244 24.92064271 1.118612457 1.026064235 0.200313593 0.081477003 447.8361313 200415.1489 0.027720812 0.027720806 6.23E-07 6.205753244 -0.092548222 RQQPPLGPSSS(ph)LLSLPGLK ddPTM_HeLa_A486_30min_R1 1 RQQPPLGPSSSLLSLPGLK 19 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 RQQPPLGPS(0.024)S(0.128)S(0.848)LLSLPGLK 116.45 1.85E-05 91866000 214190 182700 135760 59308 226000 159000 198600 194750 150890 240580 TRUE FALSE FALSE 199176.3871 168222.1866 188329.9078 138072.0213 197652.9726 139384.1966 148908.1794 150409.6764 163969.2667 180337.2021 1.104466437 0.932820209 1.044320892 0.765632491 1.096018849 0.772908723 0.825720804 0.834046856 0.909237056 1 17.46033752 -5.234270428 24.62355469 0.880807885 1.017764309 0.278512123 0.103391268 820.2803027 743428.7336 0.027000635 0.046749351 5.83E-06 5.234270428 0.136956424 RQRS(ph)DQDS(ph)DS(ph)DQPSRK ddPTM_HeLa_A486_30min_R1 2 RQRSDQDSDSDQPSRK 16 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 3 0 RQRS(1)DQDS(1)DS(1)DQPSRK;RQRS(1)DQDS(1)DS(1)DQPSRK ; 132.86 8.94E-06 969860000 977080 570560 672640 732030 1053430 1286110 1361470 1253570 768510 1381540 TRUE FALSE FALSE 908591.7376 525346.7477 933104.2219 1704202.835 921298.9866 1127442.824 1020815.806 968159.4762 835125.0656 1035593.392 0.877363399 0.507290556 0.901033388 1.645629306 0.889633899 1.088692564 0.98573032 0.934883791 0.806421779 1 19.98202623 -4.995227994 24.83707885 1.057637615 0.695285564 0.277016983 0.230236617 153.5283865 799050.6626 0.060776731 0.125787145 1.01E-05 4.995227994 -0.362352051 RQRS(ph)DQDS(ph)DSDQPSRK ddPTM_HeLa_A485_30min_R1 1 RQRSDQDSDSDQPSRK 16 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 RQRS(0.977)DQDS(0.961)DS(0.058)DQPS(0.003)RK 48.896 0.031054 73635000 8477.7 15210 8090 10366 11244 15946 21669 32357 13705 17477 TRUE FALSE FALSE 10363.53512 16988.67719 11082.82765 10932.26833 10124.50788 16780.9079 17039.24113 24421.39502 16455.46779 13120.30554 0.789885196 1.294838534 0.844708046 0.833232755 0.771667081 1.279002829 1.298692403 1.861343468 1.25419852 1 13.6795137 -6.452708944 3.501706726 1.41686487 0.922016811 0.424328855 0.246795796 0.221239124 5.277218745 0.09329406 0.078326332 3.53E-07 6.452708944 -0.494848059 RQRS(ph)DQDS(ph)DSDQPSRK ddPTM_HeLa_A486_30min_R1 2 RQRSDQDSDSDQPSRK 16 3 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 RQRS(0.99)DQDS(0.971)DS(0.038)DQPSRK;RQRS(0.999)DQDS(0.984)DS(0.017)DQPSRK ; 72.568 0.0044889 124404000 118252 49466 91399 63386 101359 142025 128336 121286 89392 163223 TRUE FALSE FALSE 109963.1455 45546.13401 126791.1406 147565.8114 88645.60908 124503.3995 96224.9754 93671.82545 97140.57053 122350.8984 0.898752252 0.372258272 1.036291047 1.206086864 0.724519478 1.017592851 0.786467257 0.765599817 0.793950611 1 16.90066517 -4.780509961 24.99999737 0.910421071 0.635504979 0.26686865 0.185965705 280.9105898 368251.4121 0.048592615 0.101407438 1.66E-05 4.780509961 -0.274916092 RQS(ph)FAVLR ddPTM_HeLa_A485_30min_R1 5 RQSFAVLR 8 1 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2;A0A087WWG1 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR ;;;; 174.4 9.47E-06 1921490000 554352 711165 745201 511862 745310 541331 600032 732078 466021 528258 TRUE FALSE FALSE 677665.6899 794329.5604 1020881.86 539823.725 671104.3195 569674.2541 471830.2614 552534.7226 559547.1401 396573.0025 1.708804396 2.002984458 2.574259604 1.36122157 1.692259219 1.436492778 1.189768992 1.39327367 1.410956209 1 18.59722694 -5.289711721 24.56762039 1.38182123 2.08611298 0.630743072 0.259035893 369.7036151 321257.9443 0.073525409 0.109081158 5.13E-06 5.289711721 0.704291751 RQS(ph)FAVLR ddPTM_HeLa_A486_30min_R1 4 RQSFAVLR 8 1 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2;A0A087WWG1 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR;RQS(1)FAVLR ;;; 156.51 6.51E-05 1558210000 674506 681540 561457 239045 770220 614243 591403 638029 564987 491595 TRUE FALSE FALSE 627226.6126 627532.2883 778868.1867 556508.8407 673611.8256 538463.9438 443427.7142 492763.7248 613960.5281 368496.4123 1.702124069 1.70295359 2.113638453 1.510215085 1.828001042 1.461246096 1.203343369 1.337228012 1.666123489 1 18.49129105 -6.397250929 3.791482963 1.329131423 1.772045107 0.529770605 0.209382747 0.203563743 5.171028629 0.076040293 0.065735251 4.01E-07 6.397250929 0.442913685 RQS(ph)GLYDSQNPPTVNNCAQDR ddPTM_HeLa_A485_30min_R1 2 RQSGLYDSQNPPTVNNCAQDR 21 1 Q96RU3-5;Q96RU3-2;Q96RU3;B7ZL14;H0Y7W6;Q96RU3-4;Q96RU3-3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 RQS(1)GLYDSQNPPTVNNCAQDR;RQS(1)GLYDSQNPPTVNNCAQDR ; 221.73 8.22E-36 543420000 175297 234350 216070 153348 203400 172999 202600 224110 167772 216420 TRUE FALSE FALSE 214291.2129 261755.1939 296003.2844 161725.0129 183148.7818 182056.9601 159312.8549 169146.6711 201442.3015 162470.4769 1.318954785 1.611093898 1.821889675 0.995411696 1.12727423 1.120554107 0.980564949 1.041091738 1.239870193 1 17.30981806 -5.27238559 24.99971392 1.074324391 1.586690901 0.75184405 0.134755161 332.1843799 758665.1742 0.038104462 0.05714204 5.34E-06 5.27238559 0.51236651 RQS(ph)GLYDSQNPPTVNNCAQDR ddPTM_HeLa_A486_30min_R1 2 RQSGLYDSQNPPTVNNCAQDR 21 1 Q96RU3-5;Q96RU3-2;Q96RU3;B7ZL14;H0Y7W6;Q96RU3-4;Q96RU3-3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 RQS(1)GLYDSQNPPTVNNCAQDR;RQS(1)GLYDSQNPPTVNNCAQDR ; 195.64 2.07E-20 754930000 198564 261450 212942 90076 245650 189252 236459 223683 182441 174501 TRUE FALSE FALSE 184645.689 240731.7498 295398.8452 209701.4802 214838.2864 165904.0124 177294.4572 172755.2639 198255.1328 130804.8138 1.411612338 1.840389072 2.258317845 1.603163325 1.642434098 1.268332622 1.355412328 1.320710292 1.515656244 1 16.99705611 -5.977309073 1.954243132 1.314050771 1.829742772 0.494308374 0.233908935 0.291447031 2.251319837 0.087021237 0.09711177 1.05E-06 5.977309073 0.515692001 RQS(ph)HLLLQSSIPDQQLLK ddPTM_HeLa_A486_30min_R1 1 RQSHLLLQSSIPDQQLLK 18 1 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-2 A0MZ66-8 KIAA1598 Shootin-1 1 0 RQS(0.947)HLLLQS(0.022)S(0.03)IPDQQLLK 90.978 0.00018435 0 96223 113790 53051 35605 103470 95019 116490 119930 78052 111810 TRUE FALSE FALSE 89478.2646 104772.866 73593.76796 82890.23938 90491.82778 83296.52186 87342.96989 92624.55705 84817.6102 83812.04824 1.067606227 1.250093133 0.87808101 0.989001476 1.079699514 0.993849018 1.042129046 1.105146086 1.011997821 1 16.35487003 -4.748842707 24.99999946 1.018197738 1.158849628 0.404794953 0.070720281 228.7942152 454068.6058 0.017904613 0.046677065 1.78E-05 4.748842707 0.14065189 RQS(ph)ILFSTEV ddPTM_HeLa_A485_30min_R1 1 RQSILFSTEV 10 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 RQS(1)ILFSTEV 110.44 0.0019487 95676000 140150 142960 136390 191560 183730 143930 224780 221460 143230 248040 TRUE FALSE FALSE 171325.884 159677.9284 186846.3367 202024.4377 165437.1961 151465.9522 176753.9167 167146.5878 171974.9472 186208.1928 0.920077046 0.857523646 1.003427045 1.084938502 0.888452831 0.813422599 0.949227389 0.897632834 0.923562732 1 17.50655702 -2.937672149 14.38960799 0.930806454 0.460623214 0 0.075079135 0 0 0.018192251 0 0.001154324 2.937672149 -0.47018324 RQS(ph)ILFSTEV ddPTM_HeLa_A486_30min_R1 1 RQSILFSTEV 10 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 RQS(1)ILFSTEV 79.697 0.020986 140790000 209680 226330 187230 125460 234690 226140 308490 328340 176700 280260 TRUE FALSE FALSE 194982.5148 208394.7865 259730.4702 292077.2204 205252.9918 198241.146 231302.5391 253584.1496 192016.4983 210081.0718 0.928129855 0.991973169 1.236334468 1.39030717 0.977018015 0.943641159 1.101015609 1.20707757 0.914011418 1 17.68058666 RQS(ph)LELQK ddPTM_HeLa_A485_30min_R1 2 RQSLELQK 8 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 RQS(1)LELQK;RQS(1)LELQK ; 124.39 0.00036647 600730000 439140 462720 418660 507180 718280 517490 757860 907750 509950 923020 TRUE FALSE FALSE 536825.178 516831.0789 573539.7559 534885.9592 646765.5212 544584.9762 595937.0199 685122.8892 612292.2875 692928.1009 0.774719884 0.745865376 0.82770457 0.771921298 0.933380419 0.785918446 0.860027208 0.9887359 0.883630331 1 19.40234614 -6.414393024 0.256068123 1.020694947 0.697342438 0.630736956 0.05319298 1.923798675 0.305126416 0.100251479 0.212261275 3.85E-07 6.414393024 -0.323352509 RQS(ph)LELQK ddPTM_HeLa_A486_30min_R1 2 RQSLELQK 8 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 RQS(1)LELQK;RQS(1)LELQK ; 142.89 0.0002234 461190000 908890 825710 512400 333820 852060 941590 1077280 995980 686370 1136460 TRUE FALSE FALSE 845181.5045 760277.7324 710815.0025 777149.8303 745186.6897 825426.1992 807733.1497 769217.0961 745865.1042 851883.0189 0.992133293 0.892467294 0.834404474 0.912272945 0.87475237 0.968943131 0.948173789 0.902960945 0.87554874 1 19.70029581 -6.248823407 24.81919579 0.933625911 0.897624215 0.124010875 0.04885772 1716.73766 3377310.446 0.016511198 0.016397472 5.64E-07 6.248823407 -0.036001696 RQS(ph)LPAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RQSLPASPR 9 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 RQS(1)LPAS(1)PR;RQS(1)LPAS(1)PR ; 68.463 0.0023787 0 305980 309670 325580 149057 417080 325530 353290 335430 272460 354360 TRUE FALSE FALSE 284532.3821 285130.6214 451653.2953 347012.2289 364765.9373 285369.4183 264893.1053 259059.9114 296077.0522 265625.9495 1.071176904 1.073429091 1.70033574 1.30639431 1.373231561 1.074328088 0.997241067 0.975280886 1.114639036 1 18.01903657 -6.357858497 4.697298334 1.022357473 1.31368904 0.398112852 0.168033852 0.250649067 9.19932051 0.064310133 0.056452147 4.39E-07 6.357858497 0.291331567 RQS(ph)LTSPDSQSARPANR ddPTM_HeLa_A485_30min_R1 1 RQSLTSPDSQSARPANR 17 2 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 RQS(0.84)LT(0.121)S(0.038)PDS(0.001)QSARPANR 55.972 0.024459 708360000 105900 154140 124250 149310 258700 172530 251860 325170 136570 213930 TRUE FALSE FALSE 129457.0896 172165.3322 170215.2455 157466.4272 232942.9196 181563.404 198048.0535 245421.5477 163978.3463 160601.1881 0.806078032 1.072005346 1.059862928 0.980481085 1.450443315 1.130523418 1.233166802 1.52814279 1.021028227 1 17.29312304 -4.26026922 0.695573898 1.240115811 0.592569841 0.302093292 0.174468473 3.46247285 1.275014673 0.07375725 1.780856454 5.49E-05 4.26026922 -0.647545971 RQS(ph)LTSPDSQSARPANR ddPTM_HeLa_A486_30min_R1 1 RQSLTSPDSQSARPANR 17 2 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 RQS(0.766)LT(0.117)S(0.117)PDSQSARPANR 63.044 0.01327 356260000 98086 85276 71677 57560 131780 102820 145810 173800 70109 133730 TRUE FALSE FALSE 91210.67792 78518.41919 99432.25398 134002.5889 115250.9236 90135.1138 109326.7958 134229.534 76186.10457 100243.1376 0.909894484 0.783279745 0.991910832 1.336775685 1.14971385 0.89916493 1.09061626 1.339039632 0.760013168 1 16.61314395 -4.984914712 8.568673599 1.097400953 0.855824452 0.228822946 0.170084287 0.240344704 105.9333007 0.044079866 0.089816621 1.04E-05 4.984914712 -0.241576502 RQS(ph)MAFSILNT(ph)PK ddPTM_HeLa_A486_30min_R1 2 RQSMAFSILNTPK 13 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 2 0 RQS(0.998)MAFS(0.002)ILNT(1)PK;RQS(0.956)MAFS(0.046)ILNT(0.998)PK ; 99.409 0.00065822 149438000 169728 211416 150981 133168 213459 249593 306790 300820 158190 278200 TRUE FALSE FALSE 157830.9437 194662.6262 209444.8866 310021.8339 186684.9818 218800.7533 230027.8971 232329.8529 171902.0366 208536.9092 0.756848964 0.933468454 1.004354037 1.4866521 0.895213142 1.049218357 1.103056039 1.11409464 0.824324275 1 17.66994323 -4.50333521 2.390744308 1.074189999 0.755142972 0.2421233 0.166435339 0.501273454 4.834335948 0.044402916 0.265036026 3.14E-05 4.50333521 -0.319047027 RQS(ph)NLQEVLER ddPTM_HeLa_A485_30min_R1 1 RQSNLQEVLER 11 1 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 RQS(1)NLQEVLER 67.416 0.0092609 0 26874 47014 41233 28098 51003 35709 44445 45913 33293 39184 TRUE FALSE FALSE 32852.02859 52511.87833 56486.80255 29632.92259 45924.96224 37578.66802 34948.96267 34652.76476 39974.59972 29416.14993 1.116802459 1.785137704 1.92026498 1.007369172 1.561215943 1.277484243 1.18808759 1.178018362 1.358933777 1 14.84432081 -5.890317474 0.995025374 1.196650494 1.571696757 0.213307342 0.268064984 0.830608743 1.776815427 0.131334711 0.176429222 1.29E-06 5.890317474 0.375046263 RQS(ph)NLQEVLER ddPTM_HeLa_A486_30min_R1 1 RQSNLQEVLER 11 1 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 RQS(1)NLQEVLER 109.79 0.00033517 104080000 52791 70330 55569 19628 71961 54670 53822 62628 58372 63357 TRUE FALSE FALSE 49090.62351 64756.79466 77086.80499 45694.97594 62934.98037 47925.37124 40355.16633 48368.97156 63431.73196 47491.99482 1.033661014 1.363530736 1.623153655 0.962161647 1.325170286 1.009125252 0.849725653 1.01846578 1.335629977 1 15.53539673 -5.78757 1.52610925 1.044562862 1.314676943 0.193226119 0.207405837 0.602516527 2.918121364 0.078996877 0.105436298 1.63E-06 5.78757 0.270114081 RQS(ph)PEPSPVTLGR ddPTM_HeLa_A485_30min_R1 5 RQSPEPSPVTLGR 13 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 RQS(1)PEPSPVTLGR;RQS(0.998)PEPS(0.002)PVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR ;;;; 110.77 0.00018016 3226230000 1092610 1313110 1473210 1123920 1576950 1209280 1391830 1442860 1341270 1612250 TRUE FALSE FALSE 1335657.325 1466666.792 2018211.684 1185316.904 1419943.321 1272596.031 1094454.15 1088996.323 1610450.586 1210345.746 1.103533704 1.211775062 1.667467078 0.979320915 1.173171654 1.05143182 0.904249181 0.899739869 1.330570699 1 20.20698779 -5.369799052 20.93217202 1.043494267 1.317472497 0.334482314 0.180226676 9.019901779 1729.436702 0.051003543 0.075650458 4.27E-06 5.369799052 0.27397823 RQS(ph)PEPSPVTLGR ddPTM_HeLa_A486_30min_R1 5 RQSPEPSPVTLGR 13 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR;RQS(1)PEPSPVTLGR ;;;; 154.39 2.05E-08 4224180000 1521250 1952430 1773300 512246 2104290 1675560 1843390 1726630 1749660 1650770 TRUE FALSE FALSE 1414618.231 1797712.336 2459969.251 1192534.575 1840350.326 1468846.443 1382154.325 1333514.041 1901321.938 1237406.447 1.143212268 1.452806667 1.988004229 0.96373716 1.487264213 1.187036358 1.116976825 1.077668574 1.536537927 1 20.23888803 -5.292636221 24.98389543 1.207358747 1.520488112 0.253498767 0.260757743 940.428839 753137.6126 0.072598439 0.107692387 5.10E-06 5.292636221 0.313129365 RQS(ph)PLPPQK ddPTM_HeLa_A485_30min_R1 12 RQSPLPPQK 9 1 Q01105;B2REB7 Q01105 SET Protein SET 1 0 RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK ;;;;;;;;;;; 125.17 0.00079868 43002330000 10464920 13024780 11414130 11277830 15005410 13918980 16575130 18430370 11953010 15752030 TRUE FALSE FALSE 12792805.35 14547914.72 15636691.67 11893909.3 13511418.69 14647756.27 13033718.07 13910292.86 14351869.47 11825338.82 1.081813008 1.23023238 1.322303903 1.005798606 1.142581951 1.238675399 1.102185593 1.176312415 1.213653976 1 23.49537818 -10.57159698 2.578138554 0.986718819 1.169375353 0.25697981 0.085766431 27822391.28 25374634.5 2532095.741 0.022956554 2.68E-11 10.57159698 0.182656534 RQS(ph)PLPPQK ddPTM_HeLa_A486_30min_R1 12 RQSPLPPQK 9 1 Q01105;B2REB7 Q01105 SET Protein SET 1 0 RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK ;;;;;;;;;;; 78.903 0.0052521 24344410000 11468080 11852570 8393050 4002480 12411990 11176310 12446600 12554810 9170270 12823320 TRUE FALSE FALSE 10664226.81 10913329.19 11643063.73 9317975.714 10855162.48 9797490.505 9332329.033 9696353.833 9965156.387 9612277.206 1.109438126 1.135353148 1.211270075 0.96938275 1.129301855 1.01926841 0.970875978 1.008746796 1.036711299 1 23.19644682 -5.626320938 1.029323754 1.007218373 1.14725001 0.468867051 0.056630767 0.481449164 1.068270262 0.024232203 0.043866643 2.36E-06 5.626320938 0.140031637 RQS(ph)PLPPQKK ddPTM_HeLa_A485_30min_R1 5 RQSPLPPQKK 10 2 Q01105;B2REB7 Q01105 SET Protein SET 1 0 RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK ;;;; 72.705 0.005485 7457060000 5926790 6196520 4295980 6267840 7061120 7097680 8727100 9694400 5297870 8568500 TRUE FALSE FALSE 7245183.988 6921149.111 5885241.773 6610236.228 6358090.1 7469303.55 6862483.791 7316833.2 6361103.914 6432530.642 1.126334936 1.075960535 0.914918576 1.027626077 0.988427487 1.161176521 1.066840436 1.137473509 0.988896014 1 22.61695499 -6.218749604 24.99907782 1.079217258 1.023239341 0.080701923 0.071463511 1058.129782 619639.4948 0.02368682 0.023686568 6.04E-07 6.218749604 -0.055977917 RQS(ph)PLPPQKK ddPTM_HeLa_A486_30min_R1 6 RQSPLPPQKK 10 2 Q01105;B2REB7 Q01105 SET Protein SET 1 0 RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK;RQS(1)PLPPQKK ;;;;; 96.745 0.00098545 6820500000 13281240 11822130 6448640 4721930 11200610 11622900 13416050 13607620 8832590 14226000 TRUE FALSE FALSE 12350293.66 10885301.36 8945726.109 10992891.67 9795725.052 10188984.77 10059212.39 10509461.98 9598206.013 10663717 1.158160298 1.02077928 0.838893803 1.030868661 0.918603246 0.955481542 0.943312016 0.985534591 0.900080714 1 23.34620706 -4.382175763 3.592575438 0.947418931 1.160303868 0.604921576 0.051909437 0.150036891 3.11634959 0.01214279 0.067561066 4.15E-05 4.382175763 0.212884938 RQS(ph)PS(ph)PSTRPIR ddPTM_HeLa_A485_30min_R1 4 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RQS(1)PS(0.705)PS(0.268)T(0.028)RPIR;RQS(1)PS(0.578)PS(0.232)T(0.19)RPIR;RQS(0.996)PS(0.769)PS(0.207)T(0.028)RPIR;RQS(1)PS(0.96)PS(0.021)T(0.019)RPIR ;;; 87.932 0.0050493 51638320000 5763057 8199645 8283630 5926385 9309084 7742751 8616203 9593543 7646136 8477082 TRUE FALSE FALSE 7045029.147 9158522.155 11348089.45 6250128.406 8382238.911 8148149.47 6775280.841 7240711.537 9180645.361 6363901.467 1.107029891 1.439136386 1.783196913 0.982122121 1.3171541 1.280370149 1.064642637 1.1377787 1.442612745 1 22.60148007 -5.282008502 24.99746215 1.18641614 1.442722698 0.266149395 0.203436282 1105.083973 1342995.745 0.057144752 0.084867702 5.22E-06 5.282008502 0.256306558 RQS(ph)PS(ph)PSTRPIR ddPTM_HeLa_A486_30min_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RQS(1)PS(0.967)PS(0.032)T(0.001)RPIR 81.327 0.003491 702670000 21755 36000 41294 7829.1 48708 29221 26316 16185 30701 42830 TRUE FALSE FALSE 20230.08684 33147.22889 57284.14269 18226.54046 42598.58846 25616.01012 19731.45846 12500.02882 33362.1874 32105.08922 0.630120873 1.032460264 1.784269849 0.567714992 1.326848468 0.797880048 0.614589741 0.389347269 1.039155729 1 14.97051439 -6.459145779 7.888998684 0.709199194 1.077688269 0.139350739 0.364487828 0.536612246 60.75631898 0.127318418 0.111692328 3.47E-07 6.459145779 0.368489075 RQS(ph)PSPS(ph)TRPIR ddPTM_HeLa_A485_30min_R1 4 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RQS(0.988)PS(0.027)PS(0.546)T(0.439)RPIR;RQS(0.991)PS(0.013)PS(0.886)T(0.111)RPIR;RQS(0.995)PS(0.143)PS(0.493)T(0.369)RPIR;RQS(1)PS(0.312)PS(0.665)T(0.023)RPIR ;;; 115.38 0.00099458 15701880000 1987570 2835970 2899870 2150300 3316830 2797750 3099480 3346370 2639810 2788370 TRUE FALSE FALSE 2429698.089 3167612.022 3972652.587 2267765.444 2986594.759 2944235.864 2437250.778 2525667.511 3169595.653 2093280.675 1.160712999 1.513228522 1.897811714 1.083354693 1.426753132 1.406517482 1.164321061 1.206559417 1.51417614 1 20.99733434 RQS(ph)PSPS(ph)TRPIR ddPTM_HeLa_A486_30min_R1 3 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RQS(0.959)PS(0.064)PS(0.545)T(0.433)RPIR;RQS(0.999)PS(0.027)PS(0.531)T(0.443)RPIR;RQS(1)PS(0.145)PS(0.573)T(0.282)RPIR ;; 105.46 0.0015573 11573200000 1083220 1201020 1082120 382405 1390050 1094750 1153260 1209610 965410 1134940 TRUE FALSE FALSE 1007291.872 1105846.801 1501145.844 890258.1657 1215696.967 959690.8756 864702.1501 934208.2086 1049092.516 850743.6368 1.184013407 1.299859033 1.764510223 1.046447046 1.428981558 1.128061186 1.016407426 1.098107783 1.23314765 1 19.69836493 -6.34962675 5.695613281 1.092933921 1.348580198 0.318255407 0.183012297 0.292190952 14.90766976 0.064965852 0.05715244 4.47E-07 6.34962675 0.255646277 RQS(ph)PSPST(ph)RPIR ddPTM_HeLa_A486_30min_R1 2 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RQS(0.999)PS(0.017)PS(0.432)T(0.552)RPIR;RQS(0.998)PS(0.005)PS(0.067)T(0.93)RPIR ; 91.932 0.001615 9122580000 4948570 5518810 5012530 1632734 6081140 4921840 5115810 5907920 4665050 4958630 TRUE FALSE FALSE 4601700.797 5081479.396 6953515.856 3801087.266 5318386.717 4314633.422 3835780.228 4562815.585 5069420.29 3716956.773 1.23802914 1.367107477 1.870755105 1.02263424 1.430844382 1.16079731 1.031967941 1.227567568 1.363863128 1 21.82569048 -5.297175709 24.99980682 1.190175051 1.479478838 0.338834472 0.200907719 704.9822574 493177.8345 0.056433924 0.083708091 5.04E-06 5.297175709 0.289303787 RQS(ph)PSPSTRPIR ddPTM_HeLa_A485_30min_R1 2 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.927)PS(0.071)PS(0.001)T(0.001)RPIR;RQS(0.968)PS(0.013)PS(0.01)T(0.01)RPIR ; 74.678 0.0074513 573800000 233253 315510 310964 214052 303339 292339 313864 351978 285282 266438 TRUE FALSE FALSE 285139.3251 352406.1499 426002.5239 225745.1188 273137.5041 307645.418 246804.3924 265654.8436 342535.4806 200019.91 1.425554712 1.761855357 2.129800598 1.12861324 1.36555158 1.538073975 1.233899127 1.328142001 1.712506923 1 17.60978409 -5.273218752 24.9678378 1.349417806 1.771348756 0.405216369 0.245047212 732.6575177 1552956.756 0.068156072 0.102018803 5.33E-06 5.273218752 0.42193095 RQS(ph)PSPSTRPIR ddPTM_HeLa_A486_30min_R1 3 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.852)PS(0.129)PS(0.009)T(0.009)RPIR;RQS(0.747)PS(0.099)PS(0.077)T(0.077)RPIR;RQS(0.497)PS(0.079)PS(0.032)T(0.393)RPIR ;; 94.532 0.0019828 219410000 233352 232018 256276 74556 336230 217567 263548 255265 242764 216701 TRUE FALSE FALSE 216995.2298 213632.0487 355512.9305 173570.1359 294056.8982 190725.7956 197605.5029 197146.7319 263806.979 162437.6591 1.335867748 1.315163305 2.188611511 1.068533841 1.810275399 1.174147649 1.216500558 1.213676268 1.624050608 1 17.30952662 -6.289035603 24.92655539 1.257206363 1.540425841 0.178374847 0.319282509 1347.155913 1216827.023 0.10878536 0.095962026 5.14E-07 6.289035603 0.283219478 RQS(ph)S(ph)SSAGDS(ph)DGEREDSAAER ddPTM_HeLa_A485_30min_R1 2 RQSSSSAGDSDGEREDSAAER 21 2 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 3 0 RQS(0.738)S(0.44)S(0.412)S(0.412)AGDS(0.992)DGEREDS(0.006)AAER;RQS(0.765)S(0.427)S(0.404)S(0.404)AGDS(1)DGEREDSAAER ; 94.275 0.00086267 961040000 297660 416830 399050 341640 505540 375670 483590 491020 399700 434300 TRUE FALSE FALSE 363873.4401 465574.6426 546675.2009 360302.9281 455206.6625 395339.5003 380267.0459 370596.5751 479916.1237 326037.0027 1.116049519 1.427980992 1.676727477 1.105098271 1.396180982 1.212560222 1.166330946 1.136670292 1.471968273 1 18.31467618 -5.870244984 1.389983508 1.207561331 1.38256149 0.118383457 0.188422918 0.889656031 3.584669435 0.074906678 0.09455244 1.35E-06 5.870244984 0.175000159 RQS(ph)S(ph)SSAGDS(ph)DGEREDSAAER ddPTM_HeLa_A486_30min_R1 2 RQSSSSAGDSDGEREDSAAER 21 2 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 3 0 RQS(0.75)S(0.442)S(0.404)S(0.404)AGDS(1)DGEREDSAAER;RQS(0.742)S(0.403)S(0.354)S(0.501)AGDS(1)DGEREDSAAER ; 89.181 0.0012316 499830000 252609 294698 260428 94883 337175 258120 284833 321196 227231 272678 TRUE FALSE FALSE 234902.4136 271345.0572 361272.6961 220892.4191 294883.3675 226275.7788 213564.7707 248066.6825 246927.566 204397.654 1.14924222 1.327535086 1.767499231 1.080699386 1.442694482 1.107037064 1.044849423 1.213647406 1.208074365 1 17.64101911 -6.271682315 24.37585236 1.123707581 1.359930273 0.298665482 0.182586468 678.5867481 1614876.52 0.064070285 0.057164434 5.35E-07 6.271682315 0.236222693 RQS(ph)SGSATNVASTPDNR ddPTM_HeLa_A485_30min_R1 5 RQSSGSATNVASTPDNR 17 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 RQS(0.919)S(0.043)GS(0.039)ATNVASTPDNR;RQS(0.915)S(0.065)GS(0.019)ATNVASTPDNR;RQS(0.326)S(0.326)GS(0.326)AT(0.023)NVASTPDNR;RQS(0.306)S(0.306)GS(0.306)AT(0.081)NVASTPDNR;RQS(0.918)S(0.061)GS(0.022)ATNVASTPDNR ;;;; 169.51 1.22E-12 983320000 517171 731504 746798 474665 878641 686184 771176 865385 695450 707970 TRUE FALSE FALSE 632213.9047 817047.0296 1023069.657 500594.747 791160.4169 722111.5332 606407.9477 653147.9719 835020.436 531486.1082 1.189521033 1.537287649 1.924922667 0.941877387 1.488581554 1.358664925 1.140966694 1.228908831 1.571104913 1 19.01967246 -5.267733185 24.99642906 1.266976472 1.549248167 0.236578549 0.247988159 769.0074633 3054183.661 0.068578407 0.104562454 5.40E-06 5.267733185 0.282271695 RQS(ph)SGSATNVASTPDNR ddPTM_HeLa_A486_30min_R1 5 RQSSGSATNVASTPDNR 17 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 RQS(0.835)S(0.058)GS(0.058)AT(0.007)NVAS(0.028)T(0.013)PDNR;RQS(0.37)S(0.37)GS(0.244)AT(0.016)NVASTPDNR;RQS(0.332)S(0.332)GS(0.332)AT(0.003)NVASTPDNR;RQS(0.551)S(0.103)GS(0.34)AT(0.006)NVASTPDNR;RQS(0.945)S(0.054)GS(0.001)ATNVASTPDNR ;;;; 168.66 2.77E-12 1363080000 571593 614186 573219 190298 773874 583238 675212 682976 522834 652405 TRUE FALSE FALSE 531527.2824 565515.6645 795184.7481 443023.3611 676807.5068 511284.0255 506266.8159 527477.2741 568153.6721 489038.5416 1.086882193 1.156382609 1.626016521 0.905906843 1.383955352 1.045488202 1.035228868 1.07860062 1.161776882 1 18.89958864 -6.299382604 24.91991048 1.067319537 1.231429862 0.176907485 0.180704683 1003.870414 659307.3598 0.061976131 0.054658752 5.02E-07 6.299382604 0.164110326 RQS(ph)SSYDDPWK ddPTM_HeLa_A485_30min_R1 3 RQSSSYDDPWK 11 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YCF0;H7C1V2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 RQS(0.654)S(0.238)S(0.1)Y(0.008)DDPWK;RQS(0.861)S(0.042)S(0.097)YDDPWK;RQS(0.894)S(0.049)S(0.055)Y(0.001)DDPWK ;; 119.54 0.00011707 1312900000 1730470 1417430 1149140 2296810 1814890 1550980 2228230 1899440 1486450 2843330 TRUE FALSE FALSE 2115407.081 1583186.108 1574254.706 2422278.914 1634193.179 1632186.915 1752150.458 1433599.362 1784766.88 2134540.159 0.991036441 0.74169891 0.737514682 1.134801285 0.765594956 0.764655051 0.820856169 0.671619766 0.836136473 1 21.02549387 RQS(ph)SSYDDPWK ddPTM_HeLa_A486_30min_R1 2 RQSSSYDDPWK 11 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YCF0;H7C1V2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 RQS(0.906)S(0.025)S(0.069)YDDPWK;RQS(0.966)S(0.033)S(0.001)YDDPWK ; 134.14 1.68E-05 1273810000 1743110 1847830 1035520 763540 1577000 1713360 2251710 2122740 1265180 2105790 TRUE FALSE FALSE 1620926.99 1701401.221 1436501.076 1777559.707 1379197.955 1501983.063 1688308.342 1639438.441 1374846.821 1578486.478 1.02688684 1.077868734 0.910049656 1.126116525 0.873747083 0.95153369 1.069574156 1.038614182 0.87099056 1 20.59011047 -4.728767362 24.99792023 0.985052177 1.052377814 0.113809001 0.079738816 448.2517186 342958.9805 0.01975296 0.052253655 1.87E-05 4.728767362 0.067325637 RQS(ph)SSYDDPWKITDEQR ddPTM_HeLa_A485_30min_R1 1 RQSSSYDDPWKITDEQR 17 2 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YCF0;H7C1V2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 RQS(0.881)S(0.109)S(0.01)YDDPWKITDEQR 80.67 0.0014962 108980000 151390 249290 146800 112010 252350 266110 344380 568670 151330 171310 TRUE FALSE FALSE 185066.1832 278442.297 201107.4289 118128.8227 227225.1479 280043.1081 270800.3997 429202.7909 181700.5429 128605.5697 1.439021526 2.165087387 1.563753648 0.918535822 1.766837536 2.177534835 2.105666187 3.337357719 1.412851273 1 16.9725936 -6.133016101 4.313034648 2.157022167 1.548465651 0.088497549 0.639418522 0.433893863 13.20524506 0.212026392 0.213127997 7.36E-07 6.133016101 -0.608556516 RQS(ph)STPSAPELGQQPDVNISEWK ddPTM_HeLa_A485_30min_R1 2 RQSSTPSAPELGQQPDVNISEWK 23 1 I3L213;Q93100-4;Q93100-2;Q93100-3;Q93100 I3L213 PHKB Phosphorylase b kinase regulatory subunit beta 1 0 RQS(0.492)S(0.492)T(0.017)PSAPELGQQPDVNISEWK;RQS(0.25)S(0.25)T(0.25)PS(0.25)APELGQQPDVNISEWK ; 297.08 2.18E-89 733100000 290378 364588 297202 290476 432022 409635 519983 543493 302839 496398 TRUE FALSE FALSE 354971.5843 407223.3951 407149.3874 306343.9684 389008.3728 431082.8552 408884.3842 410200.4896 363616.0095 372655.1141 0.952547197 1.092762127 1.092563531 0.822057599 1.043883092 1.156787708 1.097219302 1.100751 0.975744048 1 18.50748153 -5.993603444 24.99859962 1.07723042 0.995691124 0.141403807 0.086234099 317.9175396 1242451.598 0.027478679 0.031080859 1.01E-06 5.993603444 -0.081539296 RQS(ph)STPSAPELGQQPDVNISEWK ddPTM_HeLa_A486_30min_R1 1 RQSSTPSAPELGQQPDVNISEWK 23 1 I3L213;Q93100-4;Q93100-2;Q93100-3;Q93100 I3L213 PHKB Phosphorylase b kinase regulatory subunit beta 1 0 RQS(0.454)S(0.454)T(0.077)PS(0.015)APELGQQPDVNISEWK 55.526 0.0017119 0 67179 65197 44907 27893 72958 60803 84462 86103 49707 83929 TRUE FALSE FALSE 62470.09901 60030.55228 62296.19305 64936.31363 63806.92733 53301.74406 63328.71425 66499.22652 54015.64278 62912.63211 0.99296591 0.954189171 0.990201665 1.032166537 1.014214875 0.847234367 1.00661365 1.05700913 0.85858183 1 15.9410621 RQS(ph)VS(ph)PPYKEPSAYQSSTR ddPTM_HeLa_A485_30min_R1 1 RQSVSPPYKEPSAYQSSTR 19 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RQS(0.998)VS(0.984)PPY(0.014)KEPS(0.001)AY(0.001)QS(0.001)ST(0.001)R 48.232 0.029192 874500000 3491300 3498400 2874300 4987900 4612000 4256800 5432100 4886700 3586500 6886500 TRUE FALSE FALSE 4267927.64 3907507.448 3937623.18 5260376.347 4152813.086 4479679.466 4271487.459 3688229.163 4306277.653 5169822.287 0.825546296 0.755830129 0.761655423 1.017515894 0.80327966 0.866505504 0.826234873 0.713415077 0.832964348 1 22.30168326 RQS(ph)VSGLHR ddPTM_HeLa_A485_30min_R1 6 RQSVSGLHR 9 1 Q8N1G4;J3KRP5 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 RQS(0.999)VS(0.001)GLHR;RQS(0.992)VS(0.008)GLHR;RQS(0.999)VS(0.001)GLHR;RQS(1)VSGLHR;RQS(1)VSGLHR;RQS(0.997)VS(0.003)GLHR ;;;;; 174.29 1.88E-06 4119550000 1148379 1738834 2069203 1178257 2374608 1653565 1792811 1958712 1701416 1691179 TRUE FALSE FALSE 1403831.947 1942175.51 2834687.296 1242622.196 2138183.69 1740143.107 1409762.284 1478334.811 2042874.585 1269599.199 1.105728444 1.529754833 2.232741875 0.97875156 1.684140705 1.370623979 1.110399475 1.164410636 1.609070474 1 20.27594169 -6.520078373 14.97497359 1.23549498 1.519471666 0.128489879 0.348605239 1.465728905 7833.599325 0.129312577 0.103763572 3.02E-07 6.520078373 0.283976685 RQS(ph)VSGLHR ddPTM_HeLa_A486_30min_R1 6 RQSVSGLHR 9 1 Q8N1G4;J3KRP5 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 RQS(1)VSGLHR;RQS(0.999)VS(0.001)GLHR;RQS(0.994)VS(0.006)GLHR;RQS(1)VSGLHR;RQS(1)VSGLHR;RQS(0.999)VS(0.001)GLHR ;;;;; 180.47 2.15E-08 3925922000 994309 1381901 1342800 214455 1617927 1164580 1346570 1374430 1242697 953454 TRUE FALSE FALSE 924613.0737 1272394.132 1862768.121 499262.078 1414991.509 1020905.96 1009643.943 1061502.293 1350414.977 714702.9125 1.293702681 1.780311945 2.606353058 0.698558897 1.979831738 1.428434028 1.412676408 1.485235717 1.889477366 1 19.44698414 -5.258558752 24.99995447 1.457867532 1.882141418 0.180678269 0.461486274 488.3113812 4237863.152 0.123392072 0.20226756 5.51E-06 5.258558752 0.424273886 RQS(ph)VSPPY(ph)KEPSAYQSSTR ddPTM_HeLa_A486_30min_R1 2 RQSVSPPYKEPSAYQSSTR 19 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RQS(0.966)VS(0.138)PPY(0.874)KEPS(0.004)AY(0.008)QS(0.003)S(0.003)T(0.003)R;RQS(0.966)VS(0.248)PPY(0.294)KEPS(0.146)AY(0.004)QS(0.123)S(0.114)T(0.105)R ; 53.342 0.032717 1173220000 575940 583590 305240 179448 411980 482440 531750 523850 468040 632640 TRUE FALSE FALSE 535569.5802 537344.203 423437.1026 417764.0128 360305.6268 422921.4579 398700.5257 404580.7906 508610.084 474222.8262 1.129362718 1.133104889 0.892907467 0.880944547 0.759781282 0.89182012 0.840745117 0.85314491 1.072512869 1 18.85520558 -4.765625845 7.674774957 0.885492108 1.132280802 0.558695614 0.081877872 0.075337023 30.8375843 0.021098196 0.048880128 1.72E-05 4.765625845 0.246788694 RQSLT(ph)SPDSQSARPANR ddPTM_HeLa_A485_30min_R1 1 RQSLTSPDSQSARPANR 17 2 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 RQS(0.385)LT(0.539)S(0.076)PDSQSARPANR 85.231 0.0013779 48031000 12219 17413 16050 12108 18767 18580 18931 29107 15489 15170 TRUE FALSE FALSE 14937.07439 19449.29888 21987.5629 12769.42938 16898.49159 19552.82007 14886.2372 21968.46261 18597.50023 11388.39818 1.311604508 1.7078169 1.930698465 1.121266501 1.483833926 1.716906957 1.307140562 1.929021295 1.6330216 1 13.47527722 -10.35286025 5.969385203 0.999920905 1.577076963 0.311499432 0.254654053 0.000266007 2.88E-05 0.244646833 0.059327511 4.44E-11 10.35286025 0.577156058 RQSMAFSILNT(ph)PK ddPTM_HeLa_A485_30min_R1 1 RQSMAFSILNTPK 13 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RQSMAFSILNT(1)PK 60.448 0.025294 213320000 214330 233530 179110 228430 292650 311700 457570 638130 153770 344830 TRUE FALSE FALSE 262006.9691 260839.3021 245370.2424 240908.5525 263512.7384 328020.13 359806.4315 481627.617 184630.2285 258870.2271 1.012117044 1.007606417 0.947850377 0.930615139 1.01793374 1.267121884 1.389910441 1.860498298 0.713215384 1 17.98186952 -6.26407725 3.611807935 1.314253258 0.975095177 0.165780934 0.277428215 0.340156736 9.760706214 0.096486443 0.08981619 5.44E-07 6.26407725 -0.339158082 RQSMAFSILNT(ph)PK ddPTM_HeLa_A486_30min_R1 1 RQSMAFSILNTPK 13 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RQSMAFSILNT(1)PK 109.38 0.00029233 259880000 356760 269080 175090 187990 344370 345490 467590 421290 233980 507800 TRUE FALSE FALSE 331752.9663 247757.1208 242889.5371 437650.2205 301175.9035 302866.9565 350594.0363 325371.4637 254261.5748 380643.5748 0.871558036 0.650890064 0.638102291 1.149763846 0.791228129 0.795670744 0.921055968 0.854793001 0.667978108 1 18.5380812 -11.55561875 2.264198129 4.290632705 0.818371315 0.127432085 0.14454674 6130394.551 708841.6025 104163186.1 0.037534144 2.78E-12 11.55561875 -3.472261389 RQSPEPS(ph)PVTLGR ddPTM_HeLa_A485_30min_R1 1 RQSPEPSPVTLGR 13 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 RQS(0.077)PEPS(0.814)PVT(0.109)LGR 125.33 8.17E-05 608270000 259130 280450 377820 251970 400090 295650 338860 351150 305530 453900 TRUE FALSE FALSE 316772.5745 313246.1879 517591.3404 265734.4831 360255.6348 311129.7768 266459.7928 265029.9119 366847.0685 340751.0834 0.929630425 0.919281561 1.518971958 0.779849268 1.057239881 0.913070543 0.78197783 0.777781568 1.076583719 1 18.37835872 RQSPS(ph)PSTRPIR ddPTM_HeLa_A485_30min_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.334)PS(0.564)PS(0.051)T(0.051)RPIR 88.768 0.0016394 2447600000 179470 251730 295180 164860 288330 236540 273800 303550 250580 213950 TRUE FALSE FALSE 219392.4823 281167.6337 404379.3655 173865.8844 259622.8528 248924.8686 215300.3933 229103.8866 300869.1075 160616.2025 1.365942408 1.750555856 2.5176748 1.08249281 1.616417577 1.549811693 1.340464972 1.426405824 1.873217664 1 17.29325791 -5.291038773 24.99948389 1.441647202 1.865308095 0.263854059 0.353712959 987.8704712 834347.7268 0.098455701 0.14605604 5.12E-06 5.291038773 0.423660892 RQSPS(ph)PSTRPIR ddPTM_HeLa_A486_30min_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.337)PS(0.639)PS(0.012)T(0.012)RPIR 86.578 0.0018098 536350000 68869 71613 72379 22875 85915 54412 72111 73574 72409 68870 TRUE FALSE FALSE 64041.63874 65938.12507 100406.0872 53254.15604 75138.73957 47699.20066 54068.06509 56822.80631 78685.47042 51624.50373 1.24052793 1.277264096 1.944930797 1.031567418 1.455485945 0.923964343 1.047333363 1.10069448 1.524188413 1 15.65576839 RQSPSPS(ph)TRPIR ddPTM_HeLa_A485_30min_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.132)PS(0.232)PS(0.403)T(0.232)RPIR 107.35 0.00036059 2206700000 175560 193400 205100 165580 215400 206510 208880 252120 188640 216840 TRUE FALSE FALSE 214612.7163 216016.4476 280975.0249 174625.2161 193954.0197 217322.5443 164251.0816 190287.1747 226498.3177 162785.7786 1.318375095 1.326998276 1.726041594 1.072730171 1.191467838 1.335021684 1.009001419 1.168942252 1.391388852 1 17.31261514 -5.289478913 24.94636198 1.175420405 1.444124455 0.412508663 0.158251735 706.9137858 628929.1501 0.044135552 0.065478803 5.13E-06 5.289478913 0.26870405 RQSPSPST(ph)RPIR ddPTM_HeLa_A485_30min_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.16)PS(0.099)PS(0.186)T(0.555)RPIR 103.17 0.0035863 486260000 209320 296620 306190 187710 316860 285350 296300 313510 287640 246130 TRUE FALSE FALSE 255882.5119 331307.1287 419462.4226 197964.122 285312.3058 300290.4848 232993.0845 236621.1809 345366.7096 184774.3207 1.38483806 1.793036649 2.270133756 1.071383303 1.544112325 1.625174341 1.260960309 1.280595594 1.869127205 1 17.49540474 -5.272368246 24.9836339 1.402704259 1.813706231 0.287147605 0.314112583 938.3329252 2145048.389 0.087123567 0.130656655 5.34E-06 5.272368246 0.411001972 RQSPSPST(ph)RPIR ddPTM_HeLa_A486_30min_R1 1 RQSPSPSTRPIR 12 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RQS(0.016)PS(0.005)PS(0.05)T(0.929)RPIR 118.13 9.91E-05 0 61196 61454 70702 22495 73694 59033 69315 62150 58871 58208 TRUE FALSE FALSE 56906.47642 56584.16123 98079.70787 52369.49683 64450.61135 51750.10866 51971.65386 47999.80172 63973.98568 43632.33793 1.304227074 1.296840002 2.247867351 1.200245032 1.477129451 1.18604941 1.191126956 1.100096947 1.466205771 1 15.41311016 -5.908970817 1.735727541 1.198059875 1.567431465 0.229328661 0.291180643 0.546998099 3.379706299 0.108844575 0.128827987 1.23E-06 5.908970817 0.36937159 RQSS(ph)TPSAPELGQQPDVNISEWK ddPTM_HeLa_A485_30min_R1 1 RQSSTPSAPELGQQPDVNISEWK 23 1 I3L213;Q93100-4;Q93100-2;Q93100-3;Q93100 I3L213 PHKB Phosphorylase b kinase regulatory subunit beta 1 0 RQS(0.178)S(0.747)T(0.074)PS(0.001)APELGQQPDVNISEWK 132.84 1.16E-06 432950000 151170 155740 132450 148790 186720 187630 235330 260460 126900 194990 TRUE FALSE FALSE 184797.245 173952.4382 181448.7667 156918.0209 168129.5012 197454.0167 185049.823 196581.7766 152367.666 146382.5815 1.262426465 1.188341102 1.239551624 1.071971947 1.148562209 1.348890111 1.264151931 1.342931478 1.040886589 1 17.15938437 -7.888999964 6.611859818 1.002287835 1.228325155 0.537131367 0.079286523 0.17144962 8.676029105 0.082160515 0.021305821 1.29E-08 7.888999964 0.22603732 RQSS(ph)TPSAPELGQQPDVNISEWK ddPTM_HeLa_A486_30min_R1 2 RQSSTPSAPELGQQPDVNISEWK 23 1 I3L213;Q93100-4;Q93100-2;Q93100-3;Q93100 I3L213 PHKB Phosphorylase b kinase regulatory subunit beta 1 0 RQS(0.111)S(0.863)T(0.026)PSAPELGQQPDVNISEWK;RQS(0.085)S(0.767)T(0.147)PSAPELGQQPDVNISEWK ; 267.77 5.93E-62 849750000 385090 339843 272802 158256 437270 396250 462000 479420 314531 527760 TRUE FALSE FALSE 358097.1796 312912.603 378438.2403 368427.9658 382423.5192 347364.7038 346402.7135 370266.5317 341794.8003 395605.4609 0.905187655 0.790971394 0.956605198 0.931301517 0.966679071 0.878058415 0.875626723 0.93594899 0.863978974 1 18.59370282 RQSSGS(ph)ATNVASTPDNR ddPTM_HeLa_A486_30min_R1 1 RQSSGSATNVASTPDNR 17 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 RQS(0.301)S(0.057)GS(0.642)ATNVASTPDNR 135.64 4.01E-06 759970000 207830 224720 231020 60908 276100 197480 234120 244040 201620 211890 TRUE FALSE FALSE 193262.1902 206912.3688 320477.1309 141796.9021 241468.9635 173116.9254 175540.6997 188477.4194 219096.5839 158831.3648 1.216775984 1.302717313 2.01771943 0.892751267 1.520285138 1.089941685 1.105201733 1.186651135 1.379428957 1 17.27713631 -5.296397479 24.99999041 1.1843692 1.491436464 0.267799372 0.259448947 861.3523887 615987.1213 0.071582577 0.106178526 5.05E-06 5.296397479 0.307067263 RQSSIFGGADVGFSGGIPS(ph)PDKGHR ddPTM_HeLa_A485_30min_R1 1 RQSSIFGGADVGFSGGIPSPDKGHR 25 2 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 RQSSIFGGADVGFS(0.003)GGIPS(0.997)PDKGHR 114.9 9.94E-05 344060000 179780 226380 137580 207470 234780 220320 313990 369110 158910 314620 TRUE FALSE FALSE 219771.4408 252853.1718 188476.5672 218803.5608 211404.4788 231855.6145 246903.4714 278585.1938 190801.7794 236191.0242 0.930481764 1.070545219 0.797983615 0.926383894 0.895057209 0.981644478 1.045355014 1.179491027 0.80782824 1 17.84959461 -6.492085996 4.721431278 1.022513917 0.92581459 0.121282722 0.10491089 0.387277951 21.34269866 0.038440111 0.032137478 3.22E-07 6.492085996 -0.096699327 RQSSIFGGADVGFSGGIPS(ph)PDKGHR ddPTM_HeLa_A486_30min_R1 1 RQSSIFGGADVGFSGGIPSPDKGHR 25 2 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 RQSSIFGGADVGFS(0.046)GGIPS(0.954)PDKGHR 98.75 0.00073092 440290000 307400 228180 129080 136430 224600 239860 310200 288460 168640 412760 TRUE FALSE FALSE 285852.8474 210098.1858 179063.2329 317615.9348 196428.5737 210268.5119 232584.679 222783.955 183257.851 309402.2094 0.923887544 0.679045525 0.578739348 1.026547081 0.634864806 0.679596026 0.751722748 0.720046426 0.592296517 1 18.23912397 -10.32818848 5.343430368 1.000069354 0.730317648 0.262093044 0.134953114 0.000107933 1.36E-05 0.126485896 0.030669471 4.70E-11 10.32818848 -0.269751705 RQSSS(ph)YDDPWK ddPTM_HeLa_A486_30min_R1 2 RQSSSYDDPWK 11 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YCF0;H7C1V2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 RQS(0.197)S(0.297)S(0.487)Y(0.019)DDPWK;RQS(0.232)S(0.309)S(0.416)Y(0.043)DDPWK ; 61.344 0.01378 94241000 362830 387560 238354 172544 368410 388530 460520 447060 284260 475420 TRUE FALSE FALSE 337397.4907 356848.3341 330651.0521 401691.1519 322200.5825 340597.1189 345293.0251 345274.1973 308899.8857 356371.7375 0.94675715 1.001337358 0.927826248 1.127168935 0.904113735 0.955735495 0.968912483 0.968859651 0.866791199 1 18.4430234 RQSSSSAGDS(ph)DGEREDSAAER ddPTM_HeLa_A485_30min_R1 1 RQSSSSAGDSDGEREDSAAER 21 2 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 1 0 RQS(0.162)S(0.162)S(0.162)S(0.162)AGDS(0.352)DGEREDSAAER 49.662 0.027602 83243000 7514.2 19606 15992 13203 22570 23558 21534 34371 16161 18526 TRUE FALSE FALSE 9185.707866 21898.75115 21908.10628 13924.24646 20322.85155 24791.46045 16933.08498 25941.45836 19404.36446 13907.80915 0.660471234 1.574565118 1.575237771 1.001181876 1.461254705 1.782556849 1.217523537 1.865244057 1.3952136 1 13.76360755 -5.972691698 24.45814753 1.506010811 1.252912793 0.096876188 0.343334119 388.9596351 348361.6346 0.102844089 0.116611326 1.06E-06 5.972691698 -0.253098018 RQSSSSAGDS(ph)DGEREDSAAER ddPTM_HeLa_A486_30min_R1 1 RQSSSSAGDSDGEREDSAAER 21 2 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 1 0 RQS(0.122)S(0.122)S(0.122)S(0.122)AGDS(0.513)DGEREDSAAER 71.528 0.003971 195240000 27371 40310 42153 14000 63376 40437 44881 45200 36576 45488 TRUE FALSE FALSE 25452.43424 37115.68879 58475.7705 32592.70752 55426.79112 35448.29407 33651.2991 34908.94671 39746.43713 34097.50872 0.746460231 1.088516146 1.714957271 0.955867708 1.625537853 1.039615368 0.986913718 1.023797574 1.165669828 1 15.05737871 RQSVS(ph)PPYKEPS(ph)AYQSSTR ddPTM_HeLa_A486_30min_R1 1 RQSVSPPYKEPSAYQSSTR 19 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RQS(0.271)VS(0.729)PPY(0.005)KEPS(0.487)AY(0.11)QS(0.274)S(0.066)T(0.058)R 77.445 0.012256 305490000 234930 232100 120640 69297 167910 208450 227510 200670 190440 272470 TRUE FALSE FALSE 218462.6202 213707.5507 167355.0389 161326.9181 146849.1621 182733.5584 170584.5916 154981.8216 206947.4925 204241.7385 1.069627696 1.04634612 0.819396858 0.789882221 0.718996828 0.894692533 0.835209262 0.758815621 1.013247802 1 17.6399182 -4.749471378 10.69465777 0.838849877 1.058311387 0.437970818 0.091286554 0.22841446 188.9038888 0.022550517 0.056050949 1.78E-05 4.749471378 0.21946151 RQSVS(ph)PPYKEPSAY(ph)QSSTR ddPTM_HeLa_A486_30min_R1 1 RQSVSPPYKEPSAYQSSTR 19 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RQS(0.081)VS(0.915)PPY(0.025)KEPS(0.458)AY(0.428)QS(0.034)S(0.031)T(0.028)R 59.539 0.021012 1328000000 514760 496720 261770 157990 350360 470180 475280 446650 387420 593730 TRUE FALSE FALSE 478677.9822 457358.0982 363134.3544 367808.7044 306414.5818 412173.972 356359.917 344957.5453 421001.8775 445056.1435 1.075545163 1.027641355 0.815929315 0.826432147 0.688485231 0.926116801 0.800707781 0.775087706 0.945952289 1 18.76362782 -4.707213313 4.900556976 0.833788347 1.061489222 0.466069529 0.086824272 0.148599606 7.326368682 0.021361514 0.058223868 1.96E-05 4.707213313 0.227700874 RQT(ph)VLR ddPTM_HeLa_A486_30min_R1 1 RQTVLR 6 1 E9PJN4;Q9Y210-2;Q9Y210-3;Q9Y210 E9PJN4 TRPC6 Short transient receptor potential channel 6 1 0 RQT(1)VLR 84.568 0.015817 302640000 119500 110130 115000 45204 159540 124880 136410 142220 112290 113610 TRUE FALSE FALSE 111123.6671 101402.8977 159531.0798 105237.1965 139529.0055 109473.5753 102278.7752 109839.6106 122023.3876 85161.31652 1.304860841 1.190715478 1.873281043 1.235739427 1.638408273 1.285484769 1.2010004 1.28978291 1.432849944 1 16.37791063 -6.49294618 23.48776216 1.253369078 1.447632264 0.192695294 0.211976077 601.8736226 472284.3904 0.072927628 0.064192139 3.21E-07 6.49294618 0.194263186 RQTEPVS(ph)PVLKR ddPTM_HeLa_A485_30min_R1 4 RQTEPVSPVLKR 12 2 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 RQTEPVS(1)PVLKR;RQTEPVS(1)PVLKR;RQTEPVS(1)PVLKR;RQTEPVS(1)PVLKR ;;; 179.79 3.82E-13 1828680000 1662830 2068990 1652370 1614920 2311780 2262900 2798760 3210410 1696770 2160050 TRUE FALSE FALSE 2032720.797 2310940.383 2263650.424 1703138.99 2081611.066 2381381.945 2200782.062 2423051.914 2037296.175 1621589.288 1.253536153 1.425108318 1.395945595 1.050289986 1.283685753 1.468548148 1.357175999 1.494245141 1.256357692 1 20.62897703 -8.020081474 23.92565747 0.999999992 1.341155066 0.419935314 0.120646044 874.6439384 1042076.914 0.122275263 0.031571337 9.55E-09 8.020081474 0.341155074 RQTEPVS(ph)PVLKR ddPTM_HeLa_A486_30min_R1 4 RQTEPVSPVLKR 12 2 Q8IYH5-4;Q8IYH5;Q8IYH5-2 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 RQTEPVS(1)PVLKR;RQTEPVS(1)PVLKR;RQT(0.003)EPVS(0.997)PVLKR;RQTEPVS(1)PVLKR ;;; 203.2 1.78E-17 1746580000 1945850 1814610 1252280 731398 2112310 1736690 2206860 2231140 1469670 2262200 TRUE FALSE FALSE 1809455.963 1670813.695 1737196.353 1702731.507 1847364.383 1522434.845 1654680.286 1723158.127 1597062.179 1695730.396 1.067065831 0.985306213 1.024453155 1.00412867 1.089421047 0.897804774 0.975792078 1.016174583 0.941813736 1 20.69347538 -6.255795651 24.99797006 0.967920136 1.029167374 0.405139807 0.040813049 545.6675615 2416945.558 0.013447483 0.013096103 5.55E-07 6.255795651 0.061247237 RQVDQLTNDK ddPTM_HeLa_A485_30min_R1 2 RQVDQLTNDK 10 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ; ; 106.67 0.0039656 36428000 30610 35307 36360 30593 45090 41204 43533 43403 37844 46916 FALSE FALSE TRUE 37419.0889 39435.84652 49811.07707 32264.21812 40600.68128 43361.37773 34231.81892 32758.3462 45438.94367 35220.70462 1.062417385 1.119677955 1.414255552 0.916058281 1.152750398 1.23113317 0.971923171 0.930087758 1.290120233 1 15.10413615 -6.765085241 24.99996107 1.042206781 1.149619107 0.100062083 0.148489413 228.7371651 1568442.564 0.059961764 0.042217428 1.72E-07 6.765085241 0.107412326 RQVEEAER ddPTM_HeLa_A485_30min_R1 2 RQVEEAER 8 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 145.9 8.21E-06 0 148408 223010 178760 153269 155343 181600 213506 290520 181248 205864 FALSE FALSE TRUE 181420.8476 249089.0796 244890.7628 161641.6974 139876.5055 191108.2952 167888.6989 219269.5145 217622.8111 154545.8934 1.173896268 1.611748291 1.584582789 1.045913895 0.9050807 1.236579575 1.086335555 1.418798711 1.408143602 1 17.23767579 -5.260727579 24.99954476 1.164556276 1.472243038 0.339156119 0.191011771 76.37037002 2682203.149 0.05583294 0.089828738 5.49E-06 5.260727579 0.307686762 RQVEEAER ddPTM_HeLa_A486_30min_R1 1 RQVEEAER 8 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 105.52 0.00071371 0 66252 45252 75665 24873 71660 70685 66952 51538 72899 75060 FALSE FALSE TRUE 61608.07693 41666.06672 104964.5144 57905.60101 62671.7346 61964.60337 50199.90145 39803.92247 79217.94402 56264.48744 1.094972686 0.740539346 1.865555329 1.02916784 1.113877286 1.101309302 0.892212899 0.707443083 1.407956379 1 15.779937 -6.197406939 1.828624577 0.985850961 1.192367261 0.057653846 0.310398196 1.021381071 6.741631724 0.126597556 0.121142111 6.35E-07 6.197406939 0.206516299 RQVFELTDQVCELR ddPTM_HeLa_A486_30min_R1 1 RQVFELTDQVCELR 14 1 I3L3F1;A0A494BZY0;A0A494C199;A0A494C0J4;A0A494C1N2;Q9BXL6-3;Q9BXL6-2;Q9BXL6 I3L3F1 CARD14 Caspase recruitment domain-containing protein 14 0 0 42.209 0.035802 166730000 50246 49082 26774 70052 52896 68921 72931 76977 34864 141530 FALSE FALSE TRUE 46724.01487 45192.56357 37141.60983 163084.5962 46261.29044 60418.22776 54682.89241 59451.0175 37886.03959 106089.9668 0.440418791 0.425983389 0.350095404 1.537229214 0.436057168 0.569499921 0.515438868 0.560383034 0.357112371 1 16.6949287 -11.17245536 2.312695325 2.033670874 0.587392397 0.128252596 0.329895768 33165270.78 6403365.902 179944252 0.083161364 6.72E-12 11.17245536 -1.446278477 RQVS(ph)ASELHTSGILGPETLR ddPTM_HeLa_A485_30min_R1 6 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 RQVS(0.977)AS(0.023)ELHTSGILGPETLR;RQVS(0.928)AS(0.071)ELHTSGILGPETLR;RQVS(0.913)AS(0.062)ELHT(0.025)SGILGPETLR;RQVS(0.984)AS(0.014)ELHT(0.001)SGILGPETLR;RQVS(0.82)AS(0.178)ELHT(0.003)SGILGPETLR;RQVS(0.818)AS(0.182)ELHTSGILGPETLR ;;;;; 281.93 6.99E-73 20148390000 753686 2693330 3278950 262429 3350770 1528200 1877620 2628870 2004820 655836 TRUE FALSE FALSE 921340.8505 3008291.515 4491970.053 276764.8318 3017155.574 1608214.189 1476451.148 1984135.511 2407168.985 492348.155 1.871319799 6.110089952 9.123564307 0.562132363 6.128093592 3.266416605 2.998794925 4.029944036 4.889160161 1 18.90931933 -5.268373206 24.99577474 3.501953268 5.742501214 0.191545115 2.255292809 941.6773273 3394655.542 0.620001469 0.942757458 5.39E-06 5.268373206 2.240547946 RQVS(ph)ASELHTSGILGPETLR ddPTM_HeLa_A486_30min_R1 5 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 RQVS(0.964)AS(0.036)ELHTSGILGPETLR;RQVS(0.873)AS(0.127)ELHTSGILGPETLR;RQVS(0.973)AS(0.027)ELHTSGILGPETLR;RQVS(0.981)AS(0.019)ELHTSGILGPETLR;RQVS(0.871)AS(0.129)ELHTSGILGPETLR ;;;; 218.48 2.32E-35 12272540000 1091480 1115690 1837810 78257.1 2187890 630701 886231 1040830 1274750 256723 TRUE FALSE FALSE 1014972.888 1027278.661 2549459.25 182186.4837 1913464.435 552891.5231 664486.6302 803855.7302 1385246.356 192437.8898 5.274288184 5.338234909 13.2482187 0.946728754 9.94328319 2.87309076 3.452992708 4.177221705 7.198407537 1 17.55403336 -6.290524141 24.91665128 3.920959453 6.87697006 0.187549506 3.327995127 1289.497025 1104696.135 1.128694416 0.995576795 5.12E-07 6.290524141 2.956010606 RQVSAS(ph)ELHTSGILGPETLR ddPTM_HeLa_A485_30min_R1 1 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 RQVS(0.026)AS(0.974)ELHTSGILGPETLR 316.84 4.00E-102 12633000000 18860 71650 89069 7738.9 92863 38274 50486 67409 50573 13114 TRUE FALSE FALSE 23055.34193 80028.84423 122019.3296 8161.656511 83617.23366 40277.96746 39699.25367 50876.83706 60722.53722 9844.921145 2.341851356 8.128947205 12.39413986 0.82902203 8.49343864 4.091243278 4.032460299 5.167825756 6.167904884 1 13.26516394 -6.007293566 1.060098136 4.318901874 6.947231296 0.089964993 3.2988744 1.332762668 3.198142366 1.611354544 1.876341265 9.83E-07 6.007293566 2.628329422 RQVSAS(ph)ELHTSGILGPETLR ddPTM_HeLa_A486_30min_R1 1 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 RQVS(0.455)AS(0.545)ELHTSGILGPETLR 236.11 2.88E-46 1935800000 199510 243180 315380 28281 431410 121270 192950 219600 218420 88328 TRUE FALSE FALSE 185525.3793 223909.5312 437503.5822 65839.59724 377298.5351 106308.9404 144671.8692 169601.8738 237352.8215 66210.09388 2.802070929 3.381803559 6.607807911 0.994404227 5.698504759 1.605630413 2.185042502 2.561571263 3.584843451 1 16.01476356 -6.294363059 24.99119846 2.284867275 3.857655928 0.229234251 1.561399533 1067.56635 810348.4046 0.527827095 0.465529428 5.08E-07 6.294363059 1.572788653 RQYHES(ph)EEES(ph)EEEEAA ddPTM_HeLa_A485_30min_R1 3 RQYHESEEESEEEEAA 16 1 E9PNH5;Q8N9N8 E9PNH5 EIF1AD Probable RNA-binding protein EIF1AD 2 0 RQYHES(1)EEES(1)EEEEAA;RQYHES(1)EEES(1)EEEEAA;RQYHES(1)EEES(1)EEEEAA ;; 135.28 4.13E-06 2741900000 1554710 2095500 1972050 1628950 2588600 1987720 2555640 2904360 1964800 2251840 TRUE FALSE FALSE 1900549.876 2340550.497 2701593.359 1717935.414 2330869.895 2091793.946 2009606.636 2192061.156 2359117.338 1690497.73 1.124254616 1.384533357 1.598105286 1.016230536 1.378806876 1.237383469 1.188766244 1.296695711 1.395516419 1 20.68901665 -10.84977311 2.632749623 0.882220995 1.292982324 0.242361083 0.154397966 53599275.08 35855022.05 39745787.39 0.038224107 1.41E-11 10.84977311 0.41076133 RQYHES(ph)EEES(ph)EEEEAA ddPTM_HeLa_A486_30min_R1 3 RQYHESEEESEEEEAA 16 1 E9PNH5;Q8N9N8 E9PNH5 EIF1AD Probable RNA-binding protein EIF1AD 2 0 RQYHES(1)EEES(1)EEEEAA;RQY(0.044)HES(0.968)EEES(0.988)EEEEAA;RQYHES(1)EEES(1)EEEEAA ;; 100.97 0.00021739 3110080000 1677650 2200400 1920000 718690 2515610 1898310 2127440 2258080 1784840 2088680 TRUE FALSE FALSE 1560055.398 2026032.29 2663475.419 1673146.641 2200078.737 1664115.813 1595132.01 1743964.478 1939551.368 1565660.933 0.996419701 1.294042821 1.701182781 1.06865197 1.40520766 1.062883909 1.01882341 1.113883882 1.238806773 1 20.57834038 -6.274617802 24.16568542 1.089743807 1.303355132 0.229703823 0.188316242 782.3411795 1434598.131 0.066709572 0.05920278 5.31E-07 6.274617802 0.213611325 RRAADEDWDS(ph)ELEDDLLGEDLLSGK ddPTM_HeLa_A485_30min_R1 1 RRAADEDWDSELEDDLLGEDLLSGK 25 2 Q96EV2;A8MTF7;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 0 RRAADEDWDS(1)ELEDDLLGEDLLSGK 54.683 0.014551 10959000 5241.9 9305.6 5895.8 5289.9 9817.1 10913 13069 17599 5653.8 9139.4 TRUE FALSE FALSE 6407.942571 10393.80897 8076.901765 5578.873842 8839.675054 11484.38781 10276.70139 13282.81766 6788.4658 6861.115778 0.933950509 1.514886107 1.177199456 0.813114663 1.288372816 1.67383676 1.497817807 1.935955912 0.989411346 1 12.7442275 -6.003764209 24.97477326 1.482613842 1.13193907 0.159384738 0.317494351 246.1231902 1632995.023 0.096714452 0.107321366 9.91E-07 6.003764209 -0.350674772 RRAGDLLEDS(ph)PK ddPTM_HeLa_A486_30min_R1 1 RRAGDLLEDSPK 12 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RRAGDLLEDS(1)PK 95.236 0.00071672 771020000 168150 100530 45387 79253 79555 77081 134120 126570 61421 283120 TRUE FALSE FALSE 156363.5533 92563.63668 62962.06191 184504.9892 69576.47008 67571.52992 100561.7574 97752.774 66745.02173 212224.9092 0.736782284 0.436158211 0.296676117 0.86938423 0.32784309 0.318395848 0.473845214 0.460609334 0.314501356 1 17.69523447 -10.04560025 4.529142435 1.000023795 0.467220562 0.433674024 0.181503455 480459636.2 866476867.2 174997.6599 0.044543198 9.00E-11 10.04560025 -0.532803233 RRAPS(ph)VANVGSHCDLSLK ddPTM_HeLa_A485_30min_R1 4 RRAPSVANVGSHCDLSLK 18 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RRAPS(1)VANVGSHCDLSLK;RRAPS(1)VANVGSHCDLSLK;RRAPS(1)VANVGSHCDLSLK;RRAPS(0.999)VANVGS(0.001)HCDLSLK ;;; 260.03 3.50E-58 9513600000 6513500 5902570 5180720 6981300 5758990 5862360 7744100 5770950 5468280 8569600 TRUE FALSE FALSE 7962405.604 6592824.216 7097283.916 7362670.741 5185604.735 6169304.105 6089509.772 4355615.464 6565713.638 6433356.432 1.237675184 1.024787649 1.103200793 1.144452483 0.806049655 0.958955744 0.946552524 0.677036242 1.020573585 1 22.61714019 -5.752326628 24.99961756 0.890502386 1.118452673 0.517442651 0.106457307 154.3682439 423486.6072 0.030470631 0.038772409 1.77E-06 5.752326628 0.227950287 RRAPS(ph)VANVGSHCDLSLK ddPTM_HeLa_A486_30min_R1 4 RRAPSVANVGSHCDLSLK 18 2 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RRAPS(1)VANVGSHCDLSLK;RRAPS(1)VANVGSHCDLSLK;RRAPS(1)VANVGSHCDLSLK;RRAPS(1)VANVGSHCDLSLK ;;; 260.03 3.50E-58 11173300000 9595200 10944000 6937490 3110440 10421000 11062900 12457200 10901600 9616000 13052000 TRUE FALSE FALSE 8922626.03 10076757.58 9623871.92 7241261.513 9113901.008 9698071.877 9340276.801 8419543.66 10449522.62 9783694.246 0.91198946 1.029954262 0.983664419 0.740135713 0.931539844 0.991248462 0.954677913 0.860568968 1.068054904 1 23.22194789 -6.015225428 24.69621207 0.964538115 0.917657888 0.092232176 0.084915907 1994.705195 3235487.368 0.028857761 0.029814611 9.66E-07 6.015225428 -0.046880227 RRAPS(ph)VANVGSHCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A485_30min_R1 2 RRAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 37 3 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RRAPS(0.579)VANVGS(0.046)HCDLS(0.179)LKIPEIS(0.179)IQDMT(0.018)AQVTSPSGK;RRAPS(0.38)VANVGS(0.309)HCDLS(0.309)LKIPEIS(0.001)IQDMTAQVTSPSGK ; 92.606 7.07E-05 2461470000 399708 482570 225964 329664 356942 528930 709920 853580 303918 455380 TRUE FALSE FALSE 488621.6656 539002.3637 309557.4867 347672.7096 321403.6012 556623.9569 558239.7925 644238.1666 364911.5549 341862.1466 1.429294441 1.576665826 0.905503841 1.016996801 0.94015557 1.628211729 1.6329383 1.884496932 1.067423107 1 18.38305516 -6.273721373 24.8602524 1.509790342 1.172500877 0.136119778 0.316846119 1196.063305 2420970.803 0.113781759 0.101057796 5.32E-07 6.273721373 -0.337289465 RRAPS(ph)VANVGSHCDLSLKIPEISIQDMTAQVTSPSGK ddPTM_HeLa_A486_30min_R1 2 RRAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGK 37 3 Q60FE5;P21333-2;P21333 Q60FE5 FLNA Filamin-A 1 0 RRAPS(0.295)VANVGS(0.295)HCDLS(0.295)LKIPEIS(0.082)IQDMT(0.034)AQVTSPSGK;RRAPS(0.407)VANVGS(0.407)HCDLS(0.088)LKIPEIS(0.094)IQDMT(0.004)AQVTSPSGK ; 153.65 6.30E-10 2927660000 643900 483360 293209 193921 511620 500710 710400 596700 374739 796520 TRUE FALSE FALSE 598765.9351 445056.7932 406747.3772 451457.8882 447447.8489 438937.491 532650.4062 460844.4359 407221.6782 597066.2075 1.002846799 0.7454061 0.68124334 0.756127013 0.749410774 0.735157149 0.8921128 0.77184813 0.682037726 1 19.18753139 -6.71935066 24.99680133 0.817487824 0.77012552 0.048105988 0.11127779 572.6381111 340092.7073 0.042258048 0.032732717 1.91E-07 6.71935066 -0.047362304 RRAS(ph)PS(ph)PPPKR ddPTM_HeLa_A485_30min_R1 6 RRASPSPPPKR 11 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR ;;;;; 94.717 0.0012538 11575040000 868823 1148359 945569 993902 1299535 1264757 1489514 1836209 1006142 1335994 TRUE FALSE FALSE 1062089.679 1282649.596 1295374.322 1048196.35 1170148.732 1330977.721 1171267.166 1385875.864 1208065.471 1002955.283 1.058960152 1.278870172 1.291557404 1.04510776 1.166700801 1.327055895 1.167815939 1.381792277 1.204505815 1 19.93582585 RRAS(ph)PS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 6 RRASPSPPPKR 11 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR;RRAS(1)PS(1)PPPKR ;;;;; 91.307 0.0015345 11750710000 1164879 1093945 826128 534842 1295613 1176780 1389400 1364143 933930 1467038 TRUE FALSE FALSE 1083226.998 1007256.814 1146026.886 1245139.205 1133105.136 1031600.848 1041757.424 1053557.418 1014883.804 1099682.136 0.985036459 0.915952693 1.042143769 1.132271922 1.030393329 0.93809003 0.94732595 0.958056318 0.922888325 1 20.06865514 -6.259285886 24.82089424 0.950279007 1.022653497 0.285488748 0.053568912 256.1597782 2952470.388 0.020257209 0.019300079 5.50E-07 6.259285886 0.072374489 RRAS(ph)QEANLLTLAQK ddPTM_HeLa_A485_30min_R1 2 RRASQEANLLTLAQK 15 2 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RRAS(1)QEANLLTLAQK;RRAS(1)QEANLLTLAQK ; 223.93 7.73E-34 1646960000 1380750 1852920 1513900 1272570 2064050 2119330 2540600 3091500 1747280 1972070 TRUE FALSE FALSE 1687893.074 2069602.876 2073954.609 1342087.277 1858545.935 2230294.842 1997780.055 2333304.778 2097943.069 1480469.242 1.140106816 1.397937098 1.400876526 0.906528308 1.255376256 1.506478337 1.349423546 1.576057584 1.417079808 1 20.49762309 -6.102457449 7.262188543 1.403418729 1.219315752 0.120704714 0.193741557 0.489970337 30.48217901 0.06337273 0.063512906 7.90E-07 6.102457449 -0.184102976 RRAS(ph)QEANLLTLAQK ddPTM_HeLa_A486_30min_R1 2 RRASQEANLLTLAQK 15 2 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RRAS(1)QEANLLTLAQK;RRAS(1)QEANLLTLAQK ; 243.87 1.78E-41 1910560000 1743800 1759570 1309930 687740 2147780 1767430 2252400 2299100 1364840 2051810 TRUE FALSE FALSE 1621568.625 1620135.265 1817169.977 1601093.476 1878385.405 1549382.457 1688825.697 1775645.119 1483145.43 1538023.421 1.054319852 1.053387902 1.181496948 1.041007214 1.22129831 1.007385476 1.098049401 1.154498101 0.964319145 1 20.55264604 -7.77209858 24.9995941 0.98215949 1.10123183 0.355483752 0.064238904 249.6194805 585426.3624 0.056474937 0.015179765 1.69E-08 7.77209858 0.11907234 RRDEDMLYS(ph)PELAQR ddPTM_HeLa_A485_30min_R1 5 RRDEDMLYSPELAQR 15 2 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR ;;;; 199.75 1.28E-25 3607370000 596306 880546 844710 573353 1036070 856330 954200 1142340 777564 817017 TRUE FALSE FALSE 728952.2125 983518.195 1157203.38 604673.8226 932915.2329 901166.1147 750327.3749 862179.3239 933613.9626 613349.698 1.188477332 1.60351949 1.886694302 0.985854928 1.521016862 1.469253376 1.22332721 1.405689653 1.522156065 1 19.22635033 -12.16464711 0.306062668 1.47E-11 1.452488096 0.216657122 0.23689289 127.7230744 3.288056153 82.44876039 0.235192523 6.84E-13 12.16464711 1.452488096 RRDEDMLYS(ph)PELAQR ddPTM_HeLa_A486_30min_R1 4 RRDEDMLYSPELAQR 15 2 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 RRDEDMLYS(1)PELAQR;RRDEDMLY(0.001)S(0.999)PELAQR;RRDEDMLYS(1)PELAQR;RRDEDMLYS(1)PELAQR ;;; 228.38 2.71E-34 4620170000 1029640 1083470 964760 449500 1241720 1064480 1269810 1274030 900100 1310020 TRUE FALSE FALSE 957467.5531 997611.8913 1338340.909 1046458.716 1085971.899 933155.2804 952090.1073 983961.1809 978121.3927 981982.4652 0.975035285 1.015916197 1.362896952 1.065659269 1.105897445 0.950276928 0.969559173 1.002015021 0.996068084 1 19.90533774 -6.24901993 21.68254478 0.982833257 1.112260503 0.277893795 0.097579555 179.0366954 312570.5925 0.033818689 0.033492938 5.64E-07 6.24901993 0.129427246 RRDELSEEINNLR ddPTM_HeLa_A485_30min_R1 1 RRDELSEEINNLR 13 2 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;A0A087WYS2;A0A087WZG9;B4DSP0;Q86TG7-2 A0A087WXK2 PEG10 Retrotransposon-derived protein PEG10 0 0 155.42 2.32E-08 100020000 22836 42588 37291 27000 46058 37830 44935 55183 34273 35338 FALSE FALSE TRUE 27915.78942 47568.29613 51086.49271 28474.94163 41472.3038 39810.7203 35334.27016 41649.28273 41151.27673 26528.88695 1.052278954 1.793075459 1.925693031 1.073356062 1.563288497 1.500655507 1.331916798 1.569959675 1.551187459 1 14.69527653 -10.02962846 4.827992723 0.999989768 1.495358216 0.234050613 0.262348361 173075130.5 6.87626572 19687.31557 0.062365653 9.34E-11 10.02962846 0.495368449 RRDEQLS(ph)PEEEEK ddPTM_HeLa_A485_30min_R1 2 RRDEQLSPEEEEK 13 2 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 RRDEQLS(1)PEEEEK;RRDEQLS(1)PEEEEK ; 174 1.71E-12 1416900000 543670 595620 420610 643020 537930 614110 743060 750220 452780 830390 TRUE FALSE FALSE 664607.5159 665272.5778 576211.142 678146.5544 484371.8004 646263.85 584299.1608 566227.3687 543648.7929 623389.0552 1.066119962 1.067186811 0.924320274 1.087838403 0.776997601 1.036694252 0.937294545 0.908304957 0.87208588 1 19.2497733 -4.712961442 0.873018235 0.929078119 1.110300898 0.246147066 0.083127286 1.73159973 1.621486342 0.030436969 0.265087221 1.94E-05 4.712961442 0.181222779 RRDEQLS(ph)PEEEEK ddPTM_HeLa_A486_30min_R1 2 RRDEQLSPEEEEK 13 2 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 RRDEQLS(1)PEEEEK;RRDEQLS(1)PEEEEK ; 216.16 2.22E-27 1364540000 723420 669310 352560 316960 538830 600760 769500 676440 486480 1128630 TRUE FALSE FALSE 672711.9937 616271.438 489080.6739 737898.8983 471244.917 526644.3393 576962.9611 522429.3786 528648.4781 846013.7019 0.795154963 0.728441439 0.578100181 0.872206794 0.557018067 0.622500957 0.68197827 0.617518815 0.624869877 1 19.6903215 -10.89832038 7.708200018 1.05375564 0.673268606 0.518284998 0.093889101 0.051924945 0.000684946 0.054423052 0.021641783 1.26E-11 10.89832038 -0.380487033 RRDGWS(ph)LDR ddPTM_HeLa_A485_30min_R1 1 RRDGWSLDR 9 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 RRDGWS(1)LDR 81.92 0.0048962 244820000 132310 211220 205350 115280 234340 216160 232260 288950 193740 160170 TRUE FALSE FALSE 161741.903 235920.3416 281317.5103 121577.4545 211008.2868 227477.8034 182635.7536 218084.5594 232621.8409 120242.5667 1.34513016 1.962036807 2.339583377 1.011101624 1.754855145 1.891824248 1.518894337 1.813705125 1.934604752 1 16.87558819 -10.16230848 4.95737154 0.999948259 1.7355061 0.28371263 0.347975071 233948797.9 13.86147941 138173.7184 0.083200148 6.88E-11 10.16230848 0.735557841 RRDGWS(ph)LDR ddPTM_HeLa_A486_30min_R1 1 RRDGWSLDR 9 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 RRDGWS(1)LDR 55.04 0.029612 239580000 177790 157810 141450 64260 220870 156620 157040 195180 141830 211070 TRUE FALSE FALSE 165327.8391 145304.5609 196223.2282 149600.5275 193166.4251 137297.8168 117746.931 150741.7747 154123.9386 158216.6982 1.044945578 0.918389541 1.240218197 0.945541964 1.22089784 0.867783353 0.744213047 0.952755155 0.974131937 1 17.27154234 -6.293915488 24.98782328 0.89460114 1.067451646 0.334728612 0.116247051 746.6129638 574458.0126 0.04018239 0.035440169 5.08E-07 6.293915488 0.172850506 RRDS(ph)DGVDGFEAEGK ddPTM_HeLa_A485_30min_R1 6 RRDSDGVDGFEAEGK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK ;;;;; 227.4 5.06E-34 10592760000 4802080 4402200 3682440 6340260 5420740 4784160 6531000 5792820 4146710 8242750 TRUE FALSE FALSE 5870286.129 4916998.996 5044727.795 6686612.349 4881032.092 5034651.22 5135598.497 4372121.812 4978916.661 6187984.122 0.948658887 0.794604333 0.815245756 1.080580076 0.788791955 0.813617346 0.829930781 0.706550264 0.804610446 1 22.56103806 RRDS(ph)DGVDGFEAEGK ddPTM_HeLa_A486_30min_R1 5 RRDSDGVDGFEAEGK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK;RRDS(1)DGVDGFEAEGK ;;;; 239.1 2.76E-41 8479170000 7632590 6872400 4340140 3312430 6735510 7341150 9094410 8684260 6082830 9863180 TRUE FALSE FALSE 7097584.856 6327805.995 6020758.441 7711504.441 5890679.53 6435473.552 6818892.427 6707043.574 6610094.602 7393375.529 0.959992473 0.855875097 0.814345006 1.043028913 0.796751025 0.870437803 0.922297589 0.907169337 0.894056385 1 22.81780176 -9.550580376 0.605989766 1.01429303 0.891503478 0.175892234 0.067354717 21.70314441 6.15044234 0.733555014 0.026693581 2.81E-10 9.550580376 -0.122789552 RRDS(ph)DGVDGFEAEGKK ddPTM_HeLa_A485_30min_R1 4 RRDSDGVDGFEAEGKK 16 3 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK ;;; 220.86 5.15E-33 16062800000 5756387 4594572 2801126 6841450 5408037 5880040 9005600 8337050 3861244 8942780 TRUE FALSE FALSE 7036875.429 5131867.228 3837379.072 7215181.09 4869593.848 6187909.802 7081479.991 6292375.416 4636160.253 6713509.526 1.048166447 0.764409019 0.57159062 1.07472568 0.72534251 0.92171014 1.054810448 0.937270647 0.690571784 1 22.67863571 -6.468647991 24.77980655 0.925839446 0.830523982 0.060977509 0.163431448 836.0488272 382017.8727 0.057635425 0.050829332 3.40E-07 6.468647991 -0.095315464 RRDS(ph)DGVDGFEAEGKK ddPTM_HeLa_A486_30min_R1 6 RRDSDGVDGFEAEGKK 16 3 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK ;;;;; 240.46 1.05E-40 19683660000 10117560 7660450 3547032 4448240 7092620 9246790 11825490 10957450 5717820 13221930 TRUE FALSE FALSE 9408371.291 7053408.043 4920537.783 10355727.52 6202997.464 8106015.064 8866627.325 8462677.834 6213445.241 9911072.668 0.949278812 0.711669491 0.496468742 1.044864453 0.6258654 0.817874647 0.894618335 0.853860941 0.626919552 1 23.24060978 -6.501042532 24.31920398 0.835182203 0.759059177 0.045335795 0.167698555 2049.116469 2282126.07 0.058252579 0.050889131 3.15E-07 6.501042532 -0.076123025 RRDS(ph)GDNSAPSGQER ddPTM_HeLa_A485_30min_R1 3 RRDSGDNSAPSGQER 15 2 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RRDS(0.975)GDNS(0.025)APSGQER;RRDS(0.537)GDNS(0.463)APSGQER;RRDS(0.947)GDNS(0.053)APSGQER ;; 140.63 1.02E-06 7493040000 1248745 1810788 1976667 1256775 1752748 1734128 1617015 1733990 1516417 1670924 TRUE FALSE FALSE 1526524.017 2022543.905 2707918.379 1325429.436 1578238.255 1824924.261 1271526.535 1308726.234 1820747.982 1254393.398 1.216942005 1.612368104 2.158747315 1.056629793 1.258168496 1.454826105 1.013658504 1.043314032 1.451496784 1 20.25855844 -5.2982541 24.99603682 1.191843643 1.657654563 0.409419472 0.264054722 562.6971438 382052.4748 0.075079687 0.111364642 5.03E-06 5.2982541 0.46581092 RRDS(ph)GDNSAPSGQER ddPTM_HeLa_A486_30min_R1 2 RRDSGDNSAPSGQER 15 2 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RRDS(1)GDNSAPSGQER;RRDS(0.993)GDNS(0.007)APSGQER ; 201.27 1.84E-25 4155500000 1328680 1330290 1143000 376100 1359990 1252710 1294400 1347270 1075050 1289870 TRUE FALSE FALSE 1235546.393 1224872.976 1585600.211 875579.807 1189407.373 1098163.377 970527.4292 1040526.032 1168236.2 966878.1564 1.277871865 1.266832814 1.639917295 0.90557409 1.230152284 1.13578259 1.003774284 1.076170792 1.208255861 1 19.88297457 -5.270502793 24.99945732 1.088542075 1.382069881 0.5409225 0.132625146 506.9364449 1398273.107 0.036596339 0.055169297 5.36E-06 5.270502793 0.293527807 RRDS(ph)YYDR ddPTM_HeLa_A485_30min_R1 5 RRDSYYDR 8 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RRDS(1)YYDR;RRDS(1)YYDR;RRDS(1)YYDR;RRDS(1)YYDR;RRDS(1)YYDR ;;;; 134.98 0.00034747 4553500000 1357434 1723610 1781730 1313254 2012760 1511140 1693160 1689330 1487926 1427080 TRUE FALSE FALSE 1659390.51 1925171.196 2440866.071 1384993.741 1812362.547 1590260.954 1331402.534 1275019.169 1786539.1 1071335.219 1.548899429 1.796983018 2.278340175 1.292773462 1.691685771 1.484372888 1.242750644 1.190121584 1.667581787 1 20.03097854 -6.026590594 1.012729775 1.288199473 1.824548519 0.379790677 0.274269273 0.569696971 1.255308951 0.139616373 0.160914422 9.41E-07 6.026590594 0.536349046 RRDS(ph)YYDR ddPTM_HeLa_A486_30min_R1 5 RRDSYYDR 8 2 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RRDS(1)YYDR;RRDS(1)YYDR;RRDS(1)YYDR;RRDS(0.998)Y(0.001)Y(0.001)DR;RRDS(0.998)Y(0.001)Y(0.001)DR ;;;; 120.77 0.00052371 3774892000 1604823 1875152 1852225 655243 2227218 1731308 1926096 1995861 1506133 1797237 TRUE FALSE FALSE 1492333.195 1726558.126 2569456.124 1525438.818 1947859.55 1517716.822 1444166.409 1541447.02 1636685.821 1347197.157 1.107731847 1.281592763 1.907260649 1.13230555 1.445860793 1.126573652 1.071978516 1.144188148 1.214882181 1 20.36152957 -6.271388007 22.83025014 1.118064567 1.385856312 0.275467458 0.213111893 301.9566502 692930.4204 0.075451836 0.06747139 5.35E-07 6.271388007 0.267791745 RRDS(ph)YYDRGYDR ddPTM_HeLa_A485_30min_R1 2 RRDSYYDRGYDR 12 3 Q13595;Q13595-3;Q13595-4 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RRDS(1)YYDRGYDR;RRDS(1)YYDRGYDR ; 172.24 6.42E-10 990590000 105525 284780 209931 61138 236138 247445 241640 526370 131252 77969 TRUE FALSE FALSE 128998.6722 318082.5437 287593.2129 64477.81413 212627.2716 260400.8376 190011.64 397276.9322 157593.0725 58532.76321 2.203871219 5.434264953 4.913371539 1.101567918 3.632619749 4.448804794 3.246244147 6.787257433 2.692390788 1 15.83695677 -6.017714344 24.07254853 3.979945504 3.502566218 0 1.798617595 3020.197318 4104235.683 0.580405138 0.592964512 9.60E-07 6.017714344 -0.477379287 RRDSGDNSAPS(ph)GQEREDHGLETGDPPLPPPPVLPGPGEELPGAR ddPTM_HeLa_A486_30min_R1 1 RRDSGDNSAPSGQEREDHGLETGDPPLPPPPVLPGPGEELPGAR 44 3 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RRDS(0.287)GDNS(0.287)APS(0.328)GQEREDHGLET(0.098)GDPPLPPPPVLPGPGEELPGAR 60.065 0.0062211 268610000 46859 35134 35042 19211 63830 39073 49758 56659 31244 59302 TRUE FALSE FALSE 43574.42608 32349.85388 48611.20086 44724.17887 55823.84621 34252.57053 37308.02211 43758.98256 33952.25508 44452.39321 0.980249272 0.727741558 1.09355644 1.006114084 1.255811941 0.770545027 0.839280395 0.98440105 0.763789138 1 15.43997347 RRDYYDR ddPTM_HeLa_A485_30min_R1 4 RRDYYDR 7 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ;;; ;;; 96.492 0.0075494 614528000 167704 297976 263445 115577 274650 263416 234355 368481 191361 161029 FALSE FALSE TRUE 205009.1762 332821.7012 360904.2684 121890.6789 247304.8816 277208.0544 184283.1397 278110.457 229765.3974 120887.4338 1.695868377 2.753153828 2.985457272 1.008299002 2.045745152 2.293108934 1.524419321 2.30057375 1.90065576 1 16.88330476 -10.71553196 0.212853825 5.21E-16 2.304765416 0.26048481 0.54418321 40.77083079 1.439447463 23.65191947 1.345544016 1.93E-11 10.71553196 2.304765416 RRDYYDR ddPTM_HeLa_A486_30min_R1 4 RRDYYDR 7 2 P62995;P62995-3;H7BXF3;H7C2L4 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ;;; ;;; 100.19 0.0063659 405710000 209310 174750 155632 66422 227500 150225 150179 161584 83589 165987 FALSE FALSE TRUE 194638.4499 160902.1736 215896.8784 154633.7728 198964.8286 131691.7669 112602.6258 124794.8506 90834.56182 124422.7748 1.564331371 1.293189079 1.73518778 1.242809229 1.599102969 1.058421716 0.905000117 1.002990415 0.73004771 1 16.92489106 -6.405159626 3.924615993 0.915844295 1.475612371 0.767680007 0.151961173 0.110062167 2.953726156 0.052564364 0.045391249 3.93E-07 6.405159626 0.559768077 RREAPGS(ph)PPLS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RREAPGSPPLSPR 13 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 2 0 RREAPGS(1)PPLS(1)PR 74.147 0.031706 399370000 122240 309470 242490 85837 251390 276620 287870 432250 188440 134960 TRUE FALSE FALSE 149431.8663 345659.8245 332197.1419 90526.05796 226360.7289 291103.3955 226364.2228 326240.0098 226258.1795 101316.9558 1.474894949 3.411668086 3.278791189 0.893493663 2.234184073 2.873195245 2.234218558 3.219994199 2.233171909 1 16.62851611 -9.952995588 10.65240522 0.999999995 2.461952371 0.236188722 0.768333285 0 0 0.7458887 0.180904582 1.11E-10 9.952995588 1.461952377 RREAPGS(ph)PPLS(ph)PR ddPTM_HeLa_A486_30min_R1 1 RREAPGSPPLSPR 13 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 2 0 RREAPGS(1)PPLS(1)PR 73.138 0.033812 166180000 214770 201860 169610 63659 223850 120230 174240 191230 114830 211860 TRUE FALSE FALSE 199715.7321 185863.8784 235287.5343 148201.3691 195772.6457 105397.245 130643.3091 147691.1035 124783.5569 158808.877 1.257585444 1.170362022 1.481576715 0.933205825 1.232756313 0.663673511 0.822644877 0.929992745 0.785746737 1 17.27693203 -5.860056637 1.534583124 0.843374467 1.267965193 0.557053065 0.159397008 0.273943137 1.33737904 0.058267188 0.072927938 1.38E-06 5.860056637 0.424590726 RREAPGS(ph)PPLSPR ddPTM_HeLa_A485_30min_R1 2 RREAPGSPPLSPR 13 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 RREAPGS(0.995)PPLS(0.005)PR;RREAPGS(0.998)PPLS(0.002)PR ; 68.82 0.0082752 625290000 111653 256860 185101 85813 243950 267030 272550 446990 163506 123269 TRUE FALSE FALSE 136489.8247 286897.5426 253577.5626 90500.7469 219661.4814 281011.2779 214317.466 337365.0016 196320.1544 92540.3069 1.474922974 3.100244123 2.740185019 0.977960307 2.373684385 3.036636546 2.315936408 3.645600636 2.121455623 1 16.49779426 -5.998382275 24.9985128 2.596152604 2.129500821 0.0166581 0.849513049 169.8138694 2624026.878 0.259063019 0.291602131 1.00E-06 5.998382275 -0.466651783 RREAPGS(ph)PPLSPR ddPTM_HeLa_A486_30min_R1 2 RREAPGSPPLSPR 13 2 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 RREAPGS(0.997)PPLS(0.003)PR;RREAPGS(0.99)PPLS(0.01)PR ; 105.06 0.00030763 245475000 203383 177184 137976 60128 216622 142263 188238 190983 137947 214827 TRUE FALSE FALSE 189126.902 163143.2945 191404.0023 139981.0227 189451.2488 124712.0375 141138.8614 147500.34 149904.357 161032.9209 1.174461103 1.013105231 1.188601692 0.8692696 1.176475268 0.774450571 0.876459674 0.915963886 0.930892616 1 17.29699613 -5.669911442 1.071043574 0.904711425 1.11477102 0.340109538 0.112484544 0.577402967 1.395703745 0.04603791 0.077699905 2.14E-06 5.669911442 0.210059596 RREDQMDGDGPRPR ddPTM_HeLa_A485_30min_R1 5 RREDQMDGDGPRPR 14 3 Q15527 Q15527 SURF2 Surfeit locus protein 2 0 0 ;;;; ;;;; 87.083 0.00061541 361500000 75344.9 119112.4 100026.7 55586.4 100401.6 133229.7 99518.3 136878 101956.5 77933.3 FALSE FALSE TRUE 92105.11307 133041.559 137030.7388 58622.94428 90405.26417 140205.4011 78255.40222 103308.4559 122418.2343 58505.96257 1.574285919 2.273982911 2.342167068 1.001999484 1.545231635 2.396429269 1.337562853 1.765776535 2.092406124 1 15.83629604 -10.7474709 2.755894927 0.836226874 1.813313976 0.23664102 0.438822293 69321018.5 57278114.39 77501759.11 0.11071131 1.79E-11 10.7474709 0.977087102 RREDQMDGDGPRPR ddPTM_HeLa_A486_30min_R1 5 RREDQMDGDGPRPR 14 3 Q15527 Q15527 SURF2 Surfeit locus protein 2 0 0 ;;;; ;;;; 95.631 0.00038472 203440000 65306.7 62622.2 61380.8 19264.1 83233.3 54711.9 59358.7 60315.4 47824.9 58061.5 FALSE FALSE TRUE 60729.03757 57659.78881 85149.08959 44847.79835 72793.40339 47962.10205 44506.52543 46582.9001 51970.40084 43522.52248 1.395347377 1.324826447 1.956437374 1.030450346 1.672545598 1.102006486 1.022609051 1.070317101 1.194103601 1 15.40947455 -6.336696393 8.11670402 1.077151821 1.469135493 0.432093245 0.228182512 0.324379418 32.09594849 0.077210413 0.068044869 4.61E-07 6.336696393 0.391983672 RREDS(ph)YHVR ddPTM_HeLa_A485_30min_R1 8 RREDSYHVR 9 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR ;;;;;;; 153.74 2.25E-05 2694450000 162331.2 254432.9 264438.8 157493.7 289214.8 244744.5 275491 358176.1 222269 219392.4 TRUE FALSE FALSE 198441.2154 284186.6144 362265.7163 166097.182 260419.559 257558.9436 216630.0973 270332.8499 266876.3495 164701.9123 1.204850707 1.725460321 2.199523438 1.008471485 1.581156863 1.563788422 1.315285866 1.641346151 1.620359751 1 17.32949778 -10.91300681 2.564400054 0.672425658 1.5475224 0.219000307 0.305647654 31344507.03 13433771.5 61504949.78 0.074942048 1.22E-11 10.91300681 0.875096742 RREDS(ph)YHVR ddPTM_HeLa_A486_30min_R1 6 RREDSYHVR 9 2 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR;RREDS(1)YHVR ;;;;; 153.74 2.25E-05 1816701000 209941 213129.3 195633.3 60248.1 259375 161526.8 182739.3 229714.1 167107.5 205177.9 TRUE FALSE FALSE 195225.22 196240.1581 271387.753 140260.6216 226841.7689 141599.2657 137015.9943 177413.2141 181592.5126 153800.0184 1.269344582 1.275943658 1.764549549 0.911967522 1.474913796 0.920671319 0.890871118 1.153531813 1.180705403 1 17.23069615 -5.280975224 24.99873529 1.084915461 1.420545772 0.387222997 0.207326767 872.253351 1116163.139 0.058584402 0.08703032 5.24E-06 5.280975224 0.335630311 RREEEGLQLR ddPTM_HeLa_A486_30min_R1 1 RREEEGLQLR 10 2 C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4;P52294 C9J352 KPNA1 "Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed" 0 0 72.652 0.010066 34609000 26121 30966 19092 14341 50111 63946 57260 46609 52899 59030 FALSE FALSE TRUE 24290.05279 28512.14138 26484.9337 33386.57275 43825.61111 56056.99268 42932.94237 35997.14817 57484.32791 44248.50378 0.548946308 0.644363966 0.598549814 0.754524332 0.99044278 1.26686753 0.970268793 0.813522381 1.299124784 1 15.43334105 -5.658954558 2.584633736 1.059054746 0.605348837 0.713379428 0.133716682 0.156621905 2.124916441 0.043140091 0.058132938 2.19E-06 5.658954558 -0.45370591 RREEEMMIR ddPTM_HeLa_A485_30min_R1 3 RREEEMMIR 9 2 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ;; ;; 145.25 8.20E-05 892230000 188806 275864 266179 180447 312607 239111 291417 334998 253234 270961 FALSE FALSE TRUE 230805.2433 308123.8951 364649.6887 190304.3627 281482.7495 251630.4822 229153.3773 252839.2152 304055.741 203415.4094 1.13464975 1.514751985 1.792635523 0.93554546 1.383782823 1.237027632 1.126529096 1.242969822 1.494752742 1 17.63406945 -5.26475774 24.99841088 1.218838848 1.484086364 0.258633169 0.214281079 412.9612113 3110993.531 0.059053204 0.09180155 5.44E-06 5.26475774 0.265247516 RREEEMMIR ddPTM_HeLa_A486_30min_R1 3 RREEEMMIR 9 2 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ;; ;; 129.85 0.00020246 671960000 235207 226803 200613 77288 269205 206587 240703 242963 187749 233501 FALSE FALSE TRUE 218720.2039 208830.3043 278295.7262 179930.3699 235438.7987 181100.3964 180476.5635 187645.6287 204023.2345 175030.8298 1.249609593 1.193105835 1.589981185 1.027992441 1.345127593 1.034677129 1.031112997 1.072071869 1.165641703 1 17.41724953 -6.267524958 24.74975244 1.063355988 1.279362746 0.39155506 0.137381142 470.6640922 1914160.658 0.046596221 0.042150949 5.40E-07 6.267524958 0.216006758 RREEGPPPPS(ph)PDGAS(ph)S(ph)DAEPEPPSGR ddPTM_HeLa_A485_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 3 0 RREEGPPPPS(1)PDGAS(1)S(1)DAEPEPPSGR;RREEGPPPPS(1)PDGAS(1)S(1)DAEPEPPSGR ; 151.23 3.75E-09 1179150000 351990 490160 511080 382300 644080 485270 582230 713900 482890 487170 TRUE FALSE FALSE 430288.9611 547479.9482 700149.7598 403184.081 579953.1337 510677.9868 457831.8041 538814.9056 579801.5937 365727.4847 1.176528916 1.496961456 1.914402907 1.102416684 1.585752119 1.396334725 1.251838659 1.473268836 1.585337766 1 18.48040952 -10.62763653 2.722786355 0.956836499 1.446161813 0.263416931 0.221929576 24472922.92 22532461.62 7463766.734 0.054989643 2.36E-11 10.62763653 0.489325314 RREEGPPPPS(ph)PDGAS(ph)S(ph)DAEPEPPSGR ddPTM_HeLa_A486_30min_R1 1 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 3 0 RREEGPPPPS(1)PDGAS(1)S(1)DAEPEPPSGR 118.77 0.0001491 689190000 277990 329130 271970 100400 443800 287980 306050 348740 279220 314960 TRUE FALSE FALSE 258504.3365 303048.5401 377284.0676 233736.2739 388134.4657 252451.9556 229473.0529 269339.5149 303423.0144 236091.966 1.094930679 1.283603781 1.59803857 0.990022142 1.643996924 1.069294987 0.971964683 1.140824567 1.285189918 1 17.84898942 RREEGPPPPS(ph)PDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_A485_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 0 RREEGPPPPS(0.996)PDGAS(0.855)S(0.148)DAEPEPPS(0.001)GR;RREEGPPPPS(1)PDGAS(0.552)S(0.448)DAEPEPPSGR ; 179.8 3.03E-20 4335100000 533880 764020 774440 566090 852340 765800 911190 1128720 763700 715960 TRUE FALSE FALSE 652639.7641 853365.4929 1060937.583 597014.0633 767478.0369 805896.1038 716506.8128 851899.6502 916967.5849 537484.3483 1.214248873 1.587702964 1.973894843 1.110756183 1.427907695 1.49938525 1.333074749 1.584975736 1.706035883 1 19.03586322 -10.06363883 4.357117117 0.999960226 1.495048351 0.285433005 0.234045392 158464447.9 278687836.1 89685.51259 0.058659293 8.64E-11 10.06363883 0.495088126 RREEGPPPPS(ph)PDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_A486_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 0 RREEGPPPPS(1)PDGAS(0.612)S(0.388)DAEPEPPSGR;RREEGPPPPS(1)PDGAS(0.625)S(0.375)DAEPEPPSGR ; 103.18 0.0032737 6170500000 574670 619860 559200 181537 745850 555080 583080 592570 478810 569430 TRUE FALSE FALSE 534388.6006 570740.0361 775737.2159 422627.3104 652298.5382 486599.8732 437187.2168 457654.7467 520313.6363 426841.0216 1.251961675 1.337125551 1.817391433 0.990128148 1.528200208 1.140002597 1.02423899 1.072190168 1.218986953 1 18.70333931 -6.404271896 5.849612444 1.084611533 1.383468831 0.345943422 0.203179541 0.276671708 12.21778673 0.070952241 0.062165791 3.94E-07 6.404271896 0.298857299 RREEGPPPPS(ph)PDGASS(ph)DAEPEPPSGR ddPTM_HeLa_A485_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 0 RREEGPPPPS(1)PDGAS(0.062)S(0.938)DAEPEPPSGR;RREEGPPPPS(0.988)PDGAS(0.024)S(0.988)DAEPEPPSGR ; 160.77 4.95E-13 3187950000 366150 572150 576790 357720 653780 548010 609910 768110 521580 539460 TRUE FALSE FALSE 447598.8043 639057.9655 790168.6232 377261.3378 588687.3676 576702.9562 479597.746 579729.8182 626256.3218 404982.55 1.105229853 1.577988892 1.951117704 0.931549613 1.453611687 1.424019272 1.18424299 1.431493328 1.546378533 1 18.62750022 -10.97443666 2.614768632 0.652842479 1.405027032 0.168034229 0.267270935 46137001.7 24854853.05 96950784.81 0.068096682 1.06E-11 10.97443666 0.752184554 RREEGPPPPS(ph)PDGASS(ph)DAEPEPPSGR ddPTM_HeLa_A486_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 0 RREEGPPPPS(0.933)PDGAS(0.248)S(0.819)DAEPEPPSGR;RREEGPPPPS(0.917)PDGAS(0.093)S(0.99)DAEPEPPSGR ; 133.47 1.70E-05 1573790000 463570 536180 449650 198988 609250 475860 556260 567260 439110 532360 TRUE FALSE FALSE 431076.1369 493691.1441 623766.522 463254.1203 532832.184 417153.2314 417077.8645 438107.2812 477172.4084 399053.5909 1.080246229 1.237154997 1.56311467 1.160881974 1.335239667 1.045356415 1.045167551 1.097865778 1.195760217 1 18.60622298 -6.264365714 24.74590303 1.080967695 1.282836906 0.377432162 0.127229305 255.0057319 2156389.473 0.044674587 0.041100385 5.44E-07 6.264365714 0.201869211 RREEGPPPPS(ph)PDGASSDAEPEPPSGR ddPTM_HeLa_A486_30min_R1 1 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.852)PDGAS(0.115)S(0.033)DAEPEPPSGR 189.4 1.46E-20 5482800000 144300 131700 143980 46680 173020 109660 133460 155660 119510 146700 TRUE FALSE FALSE 134185.3152 121263.6124 199732.9119 108673.3991 151318.2183 96131.26414 100066.8964 120219.616 129869.223 109965.3651 1.220250712 1.102743688 1.816325637 0.988251155 1.376053433 0.874195834 0.909985578 1.093249823 1.181001153 1 16.74668968 -6.253856147 24.84972821 1.011158284 1.301010803 0.303397031 0.218983152 707.3742282 2318018.35 0.072637033 0.071282992 5.57E-07 6.253856147 0.289852519 RREEGPPPPSPDGAS(ph)S(ph)DAEPEPPSGR ddPTM_HeLa_A485_30min_R1 1 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 0 RREEGPPPPS(0.135)PDGAS(0.896)S(0.969)DAEPEPPSGR 77.925 0.029885 752460000 198400 267460 239390 205600 322250 297720 364680 391390 255450 293270 TRUE FALSE FALSE 242533.3955 298737.1204 327950.3228 216831.4074 290165.6585 313308.1588 286763.1388 295400.9888 306716.4719 220163.1862 1.101607402 1.356889521 1.489578383 0.984866776 1.317957209 1.423072423 1.302502674 1.341736527 1.393132417 1 17.74821373 -10.08682372 4.814178561 0.999988309 1.304430397 0.285881208 0.14276282 1.86E-05 3.53E-06 0.137213767 0.033277891 8.19E-11 10.08682372 0.304442088 RREEGPPPPSPDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_A485_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.381)PDGAS(0.552)S(0.067)DAEPEPPSGR;RREEGPPPPSPDGAS(0.5)S(0.5)DAEPEPPSGR ; 176.94 5.09E-15 13561500000 147946 214923 244325 154100 283362 221433 277900 293390 225920 225594 TRUE FALSE FALSE 180856.0773 240056.3753 334710.9847 162518.0928 255149.4843 233026.8895 218524.3948 221435.6425 271260.0717 169357.5675 1.067894868 1.4174529 1.976356826 0.959615181 1.506572679 1.375946129 1.29031373 1.307503678 1.601700329 1 17.36971293 -10.15153687 4.315898361 0.999917188 1.392465591 0.161227451 0.266267722 128114591.4 18.17896594 108843.7413 0.064502634 7.05E-11 10.15153687 0.392548403 RREEGPPPPSPDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_A486_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.21)PDGAS(0.475)S(0.315)DAEPEPPSGR;RREEGPPPPSPDGAS(0.5)S(0.5)DAEPEPPSGR ; 165.53 4.41E-14 8374400000 144161 153106 166460 81377 216560 168461 226703 230700 141781 203106 TRUE FALSE FALSE 134056.0583 140973.323 230917.77 189449.7686 189397.0255 147677.9946 169979.5116 178174.6461 154070.6912 152246.9356 0.880517285 0.925951793 1.516731808 1.244358501 1.24401207 0.969989931 1.116472466 1.170300377 1.011978932 1 17.21605366 -6.251932872 24.69073901 1.06831237 1.173430908 0.083465223 0.174682722 1788.4198 4644970.704 0.062772507 0.061984622 5.60E-07 6.251932872 0.105118538 RREEGPPPPSPDGASS(ph)DAEPEPPSGR ddPTM_HeLa_A485_30min_R1 3 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.001)PDGAS(0.114)S(0.886)DAEPEPPSGR;RREEGPPPPSPDGAS(0.138)S(0.862)DAEPEPPSGR;RREEGPPPPSPDGAS(0.143)S(0.857)DAEPEPPSGR ;; 172.83 1.92E-14 2641900000 255514 321786 295227 245414 375480 329333 348426 419200 283599 331447 TRUE FALSE FALSE 312352.2078 359416.0735 404443.7527 258820.3454 338095.8928 346576.3666 273981.9387 316390.5427 340514.718 248823.3627 1.255317042 1.444462729 1.625425154 1.040177026 1.35877873 1.392861035 1.101110184 1.271546768 1.368499783 1 17.92476242 -13.95703455 0.116601284 1.87E-10 1.47942349 0.280495647 0.156728976 208.3471619 1.601975227 49.62886138 1.678349002 1.10E-14 13.95703455 1.47942349 RREEGPPPPSPDGASS(ph)DAEPEPPSGR ddPTM_HeLa_A486_30min_R1 4 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;F8WCB7 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.126)PDGAS(0.407)S(0.468)DAEPEPPSGR;RREEGPPPPSPDGAS(0.159)S(0.841)DAEPEPPSGR;RREEGPPPPS(0.004)PDGAS(0.042)S(0.954)DAEPEPPSGR;RREEGPPPPS(0.002)PDGAS(0.223)S(0.775)DAEPEPPSGR ;;; 284.67 1.55E-76 8426760000 468013 505727 483801 137618 640300 434323 460732 481738 464241 420605 TRUE FALSE FALSE 435207.7055 465651.3507 671141.7038 320381.6588 559987.6034 380740.6441 345451.9805 372056.7737 504481.7837 315282.7703 1.380372626 1.476932438 2.128697687 1.01617243 1.776144008 1.2076164 1.095689372 1.180073282 1.600093095 1 18.26628681 -6.289071858 23.39326934 1.220386067 1.553153339 0.238849917 0.302501634 510.2618343 431978.0941 0.103898733 0.091660111 5.14E-07 6.289071858 0.332767272 RREFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_A485_30min_R1 1 RREFITGDVEPTDAESEWHSENEEEEK 27 2 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 RREFITGDVEPTDAES(0.002)EWHS(0.998)ENEEEEK 159.42 8.98E-11 213940000 124810 148350 102910 127290 137310 135120 189650 224070 110890 195370 TRUE FALSE FALSE 152573.5539 165698.242 140980.6914 134243.5304 123638.9343 142194.6743 149129.7282 169116.4812 133144.6059 146667.8545 1.040265806 1.129751591 0.961224202 0.915289385 0.842985906 0.969501291 1.016785366 1.153057578 0.907796779 1 17.16219318 -9.739290645 14.12963888 1.000005492 0.99407556 0.000395368 0.091921173 0 0 0.095999735 0.023283356 1.82E-10 9.739290645 -0.005929933 RREFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_A486_30min_R1 2 RREFITGDVEPTDAESEWHSENEEEEK 27 2 C9J6D1;Q99733;Q99733-2;E9PNJ7;A8MXH2;C9JZI7;E9PKT8;E9PS34 C9J6D1 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 RREFITGDVEPTDAES(0.004)EWHS(0.996)ENEEEEK;RREFITGDVEPTDAESEWHS(1)ENEEEEK ; 244.14 2.71E-50 427560000 192283 156128 84487 39374 125802 165649 208347 180927 135075 303960 TRUE FALSE FALSE 178804.9547 143755.8487 117202.629 91664.66185 110022.7401 145212.9106 156216.3769 139733.8717 146783.4098 227846.4376 0.784760809 0.630933054 0.514393072 0.402308954 0.482881107 0.637327983 0.685621327 0.613280915 0.64422078 1 17.79770229 -8.985896567 0.586764007 1.027264223 0.571108657 0.592717427 0.100990281 3.235955904 1.32911293 0.322152297 0.047897576 1.03E-09 8.985896567 -0.456155566 RREPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_A485_30min_R1 6 RREPESPPASAPIPLFGADTIGQR 24 2 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 RREPES(0.899)PPAS(0.101)APIPLFGADTIGQR;RREPES(0.978)PPAS(0.022)APIPLFGADTIGQR;RREPES(0.98)PPAS(0.02)APIPLFGADTIGQR;RREPES(0.908)PPAS(0.092)APIPLFGADTIGQR;RREPES(0.895)PPAS(0.105)APIPLFGADTIGQR;RREPES(0.5)PPAS(0.5)APIPLFGADTIGQR ;;;;; 239.56 3.39E-49 4014190000 885100 1331231 1292612 956586 1468172 1243712 1389651 1496077 1211495 1247334 TRUE FALSE FALSE 1081987.441 1486906.885 1770802.969 1008841.871 1321995.641 1308830.837 1092740.711 1129161.77 1454630.934 936396.5893 1.155479904 1.587902927 1.89108225 1.077366025 1.41179032 1.397731316 1.166963575 1.205858482 1.553434678 1 19.83676015 -5.281699795 24.99618883 1.275907384 1.549129909 0.247228885 0.227165357 1149.244116 1417871.64 0.06343738 0.094219877 5.23E-06 5.281699795 0.273222525 RREPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_A486_30min_R1 5 RREPESPPASAPIPLFGADTIGQR 24 2 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 RREPES(0.852)PPAS(0.148)APIPLFGADTIGQR;RREPES(0.997)PPAS(0.003)APIPLFGADTIGQR;RREPES(0.992)PPAS(0.008)APIPLFGADTIGQR;RREPES(0.995)PPAS(0.005)APIPLFGADTIGQR;RREPES(0.871)PPAS(0.129)APIPLFGADTIGQR ;;;; 233.63 8.02E-40 2720620000 1194238 1167087 1119077 414816 1483650 1094588 1276030 1313605 985215 1307870 TRUE FALSE FALSE 1110528.083 1074602.776 1552413.584 965712.6116 1297556.783 959548.8615 956753.7975 1014525.817 1070614.229 980370.8392 1.132763276 1.096118665 1.583496288 0.985048283 1.323536697 0.978761121 0.975910094 1.034838835 1.09205026 1 19.90296805 -6.27229685 24.86301984 1.015964357 1.223752937 0.31930254 0.151759753 840.7510765 1925269.782 0.052045871 0.04634998 5.34E-07 6.27229685 0.20778858 RREPGGYDSSSTLMSSELETTSFFDS(ph)DEDDSTSR ddPTM_HeLa_A485_30min_R1 2 RREPGGYDSSSTLMSSELETTSFFDSDEDDSTSR 34 2 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 0 RREPGGYDSSSTLMSSELETTSFFDS(1)DEDDSTSR;RREPGGYDSSSTLMSSELETTS(0.002)FFDS(0.996)DEDDS(0.001)TSR ; 229.45 5.58E-40 454644000 71021 74786 69350 103061 94023 84833 117206 112768 86320 139733 TRUE FALSE FALSE 86819.37643 83531.57215 95005.45089 108690.9615 84661.73999 89274.7247 92163.98062 85111.47119 103643.6322 104900.1347 0.827638369 0.796296138 0.905675204 1.036137482 0.807069888 0.851044901 0.87858782 0.81135712 0.988021917 1 16.678657 -7.782389947 22.09843847 0.994012078 0.867207781 0.380250249 0.06618877 81.96318591 86443.95068 0.066541229 0.017307725 1.65E-08 7.782389947 -0.126804297 RREPGGYDSSSTLMSSELETTSFFDS(ph)DEDDSTSR ddPTM_HeLa_A486_30min_R1 1 RREPGGYDSSSTLMSSELETTSFFDSDEDDSTSR 34 2 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 0 RREPGGYDSSSTLMSSELETTS(0.001)FFDS(0.976)DEDDS(0.015)T(0.004)S(0.004)R 77.804 0.00027714 137120000 24302 22203 18956 12157 23175 23917 27155 28684 25364 24748 TRUE FALSE FALSE 22598.5553 20443.55342 26296.27086 28302.11038 20268.1754 20966.36371 20360.53178 22153.27937 27562.57194 18550.93972 1.218189248 1.102022524 1.417516916 1.525642949 1.092568663 1.13020494 1.097547191 1.19418637 1.485777667 1 14.17920465 RRES(ph)EKS(ph)LENETLNK ddPTM_HeLa_A485_30min_R1 3 RRESEKSLENETLNK 15 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 RRES(1)EKS(0.818)LENET(0.182)LNK;RRES(0.996)EKS(0.969)LENET(0.036)LNK;RRES(0.995)EKS(0.937)LENET(0.067)LNK ;; 161.64 4.09E-12 2342720000 1974420 1342230 673780 2371700 1112000 1423330 1995890 1729430 885820 2673360 TRUE FALSE FALSE 2413622.917 1499192.123 923039.2603 2501259.966 1001285.376 1497853.358 1569451.797 1305284.581 1063595.949 2006940.552 1.202637973 0.747003752 0.459923569 1.246304961 0.498911328 0.746336685 0.782012101 0.650385274 0.529958871 1 20.93656645 -4.263969326 6.519251294 0.729561755 1.211551646 0.271254428 0.226995959 0.144554365 38.2013822 0.053619969 0.311272097 5.45E-05 4.263969326 0.481989891 RRES(ph)EKS(ph)LENETLNK ddPTM_HeLa_A486_30min_R1 2 RRESEKSLENETLNK 15 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 RRES(1)EKS(0.587)LENET(0.413)LNK;RRES(0.969)EKS(0.628)LENET(0.403)LNK ; 202.65 1.38E-25 2991390000 1604380 1317370 404280 702070 712870 1361800 1619390 1308540 896040 2562400 TRUE FALSE FALSE 1491921.247 1212976.803 560828.043 1634454.441 623455.1974 1193794.962 1214201.494 1010614.007 973709.4687 1920758.362 0.776735521 0.631509318 0.291982612 0.850942249 0.324588043 0.62152272 0.632146926 0.526153642 0.506940117 1 20.8732446 -10.59204814 2.90017754 1.028219451 0.569600263 0.372480402 0.165956482 60468667.51 63437988.22 13081485.45 0.039341513 2.56E-11 10.59204814 -0.458619188 RRES(ph)EKSLENET(ph)LNK ddPTM_HeLa_A485_30min_R1 1 RRESEKSLENETLNK 15 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 RRES(0.956)EKS(0.051)LENET(0.993)LNK 166.49 3.44E-11 1943600000 1020700 641800 316170 1196600 529650 598750 1056700 815710 432020 1350800 TRUE FALSE FALSE 1247751.194 716852.9271 433134.4399 1261967.228 476916.1863 630099.6242 830927.4126 615655.8435 518722.4513 1014070.42 1.230438409 0.706906457 0.427124617 1.244457193 0.470298884 0.621356872 0.819398137 0.607113502 0.511525079 1 19.95172641 -4.262051897 8.23211088 0.700206007 1.234119862 0.293892181 0.240461217 0.106861814 101.7922807 0.057123751 0.322980177 5.47E-05 4.262051897 0.533913855 RRES(ph)LSYIPK ddPTM_HeLa_A485_30min_R1 2 RRESLSYIPK 10 2 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RRES(0.715)LS(0.285)YIPK;RRES(0.473)LS(0.473)Y(0.054)IPK ; 124.51 8.44E-05 623662000 735260 883060 657840 834010 1067410 958910 1222560 1401330 899580 1109810 TRUE FALSE FALSE 898816.0504 986326.1854 901202.391 879569.8545 961134.9125 1009117.045 961350.0686 1057651.62 1080117.455 833154.7915 1.078810396 1.183845061 1.081674618 1.055710011 1.153609056 1.211199954 1.153867299 1.269453925 1.296418703 1 19.66822503 -6.008442968 5.049767503 1.19973072 1.104239988 0.189533615 0.081387478 0.273835713 20.57868329 0.025907885 0.027718522 9.81E-07 6.008442968 -0.095490732 RRES(ph)LSYIPK ddPTM_HeLa_A486_30min_R1 3 RRESLSYIPK 10 2 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 RRES(0.989)LS(0.011)YIPK;RRES(0.469)LS(0.469)Y(0.061)IPK;RRES(0.997)LS(0.003)YIPK ;; 141.85 4.59E-06 1540010000 2243160 2183930 1478220 881720 2311660 2243610 2712170 2780660 1625920 2409430 TRUE FALSE FALSE 2085926.068 2010867.433 2050626.372 2052688.72 2021710.047 1966816.21 2033556.38 2147564.419 1766856.055 1806093.045 1.15493832 1.113379755 1.135393538 1.136535421 1.119383109 1.088989415 1.125942202 1.189066325 0.978275211 1 20.78444079 -7.77369775 24.99997937 0.989137472 1.130350256 0.835809427 0.025476 94.92137415 193578.4658 0.024041539 0.006393737 1.68E-08 7.77369775 0.141212784 RRES(ph)QEEPR ddPTM_HeLa_A485_30min_R1 3 RRESQEEPR 9 2 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;H0YD62;H0YF37 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 RRES(1)QEEPR;RRES(1)QEEPR;RRES(1)QEEPR ;; 118.76 0.0003694 969089000 789998 1162916 744806 846990 775159 978406 938929 1367623 1037645 986909 TRUE FALSE FALSE 965730.3296 1298908.91 1020340.733 893258.919 697981.4482 1029633.825 738319.1488 1032211.315 1245890.834 740890.749 1.303471977 1.753171992 1.377181095 1.205655382 0.942084173 1.389724229 0.996529043 1.393203136 1.68161208 1 19.49890129 -4.997732705 24.11918377 1.235800023 1.537535722 0.208029732 0.234207511 69.69393648 741327.118 0.061205713 0.125999477 1.01E-05 4.997732705 0.301735699 RRES(ph)QEEPR ddPTM_HeLa_A486_30min_R1 2 RRESQEEPR 9 2 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;H0YD62;H0YF37 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 RRES(1)QEEPR;RRES(1)QEEPR ; 131.32 0.00016411 493950000 465126 314890 669630 248115 401784 724970 488644 402426 575540 537808 TRUE FALSE FALSE 432523.0693 289936.9696 928928.6693 577624.259 351388.5042 635530.5724 366380.1029 310802.3847 625428.2706 403137.3763 1.072892505 0.71920141 2.304248437 1.43282239 0.871634646 1.576461548 0.908821966 0.770958991 1.551402344 1 18.62091202 -6.776170365 24.99801499 1.038709077 1.329985932 0.079953769 0.449740755 676.9581712 1148765.828 0.193308507 0.130949381 1.67E-07 6.776170365 0.291276856 RRET(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RRETPSPR 8 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRET(1)PS(1)PR;RRET(1)PS(1)PR ; 88.596 0.0034463 7434500000 1752940 1879970 1242710 2101020 969970 1496200 1429650 1546890 1837260 2027040 TRUE FALSE FALSE 2142875.455 2099816.138 1702440.142 2215793.403 873396.381 1574538.718 1124193.598 1167512.802 2205981.23 1521736.233 1.408177981 1.379881804 1.11874851 1.45609558 0.573947286 1.034698842 0.7387572 0.767224159 1.449647568 1 20.53728688 -5.742209193 24.99971642 0.911675187 1.327667341 0.427371561 0.233779147 234.1688919 304423.9977 0.067379997 0.086849965 1.81E-06 5.742209193 0.415992155 RRET(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RRETPSPR 8 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRET(1)PS(1)PR;RRET(1)PS(1)PR ; 66.262 0.017363 2905310000 701950 378593 689580 267972 328644 1006210 482465 407918 948530 792820 TRUE FALSE FALSE 652746.9299 348591.9119 956603.8436 623852.3586 287422.405 882074.0406 361747.154 315043.9762 1030749.344 594292.7116 1.098359305 0.586566022 1.609650977 1.049739205 0.483637775 1.484241727 0.608701986 0.530115834 1.734413571 1 19.18081416 -3.899377771 19.69578097 0.991535735 11.34621215 0.002094696 0.442897643 4653.061939 911717.6816 0.10266849 2198.655796 0.000126073 3.899377771 10.35467641 RRET(ph)PS(ph)PRPMR ddPTM_HeLa_A485_30min_R1 14 RRETPSPRPMR 11 3 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR ;;;;;;;;;;;;; 87.519 0.0022896 24217634000 3630071 5643314 5699017 3829838 6714242 5649098 6102300 7393067 4960048 4798694 TRUE FALSE FALSE 4437567.77 6303250.482 7807320.544 4039052.352 6045748.491 5944876.036 4798493.754 5579905.726 5955484.137 3602467.899 1.231813272 1.749703442 2.167214466 1.12119038 1.678224112 1.650223181 1.332001808 1.548911991 1.653167857 1 21.78055414 -11.69109638 0.322399451 9.35E-10 1.610991614 0.264675791 0.28175457 84.2983467 2.888929192 58.85874865 0.255871784 2.04E-12 11.69109638 1.610991613 RRET(ph)PS(ph)PRPMR ddPTM_HeLa_A486_30min_R1 14 RRETPSPRPMR 11 3 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR;RRET(1)PS(1)PRPMR ;;;;;;;;;;;;; 106.14 0.0011881 32168244000 4201297 4452576 4416079 1724237 5904281 3946314 4718241 4886258 3926382 4359126 TRUE FALSE FALSE 3906807.776 4099737.662 6126103.055 4014110.874 5163711.022 3459457.902 3537687.197 3773763.72 4266723.953 3267572.476 1.195630029 1.254673826 1.874817804 1.228468811 1.580289667 1.058724153 1.082665258 1.154913547 1.305777908 1 21.63978781 -6.27088381 24.90136037 1.127738828 1.431088938 0.368015872 0.200579797 742.1993352 1956890.558 0.070367038 0.062878239 5.36E-07 6.27088381 0.30335011 RRFPPYYMR ddPTM_HeLa_A485_30min_R1 2 RRFPPYYMR 9 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 0 ; ; 157.91 4.72E-06 17530800 16440.7 17761.2 16453.3 11288.1 15873.7 14858.9 18588.1 20572.7 12656.6 14512.4 FALSE FALSE TRUE 20097.877 19838.21784 22540.06035 11904.74032 14293.25869 15636.88903 14616.60058 15527.21307 15196.66353 10894.72576 1.844734547 1.820901074 2.068896532 1.092706745 1.311942953 1.435271467 1.341621708 1.425204581 1.394864255 1 13.41134226 -5.258238062 24.9999343 1.31328649 1.902449771 0.78820064 0.148106501 126.6040222 988679.8757 0.040112403 0.065919381 5.52E-06 5.258238062 0.589163281 RRFS(ph)DSEER ddPTM_HeLa_A485_30min_R1 1 RRFSDSEER 9 2 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 RRFS(0.988)DS(0.012)EER 91.093 0.0023972 702170000 476960 744500 665330 433770 596780 552400 618740 647370 522870 512760 TRUE FALSE FALSE 583058.1065 831562.7987 911463.2537 457465.7567 537362.4878 581322.8098 486541.1444 488601.4925 627805.213 384938.3686 1.514679112 2.160249189 2.367816066 1.188412988 1.39597019 1.510171127 1.263945566 1.269297977 1.630923971 1 18.55426795 -5.271056278 24.96369559 1.342314582 2.028848236 0.601490171 0.257531299 427.2062486 1108948.123 0.07133395 0.107322889 5.36E-06 5.271056278 0.686533655 RRFS(ph)DSEER ddPTM_HeLa_A486_30min_R1 1 RRFSDSEER 9 2 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 RRFS(0.951)DS(0.049)EER 81.565 0.005065 674850000 905580 986080 713530 232480 824420 747910 776870 767230 710380 974450 TRUE FALSE FALSE 842103.5184 907939.4296 989827.925 541225.1889 721013.5562 655640.4684 582488.9091 592548.4775 771956.3104 730441.3774 1.152869408 1.243001092 1.355109329 0.740956366 0.98709298 0.897594918 0.797447854 0.811219758 1.056835407 1 19.47840897 -5.257181728 24.99938579 0.890283222 1.249594068 0.70791079 0.103394192 187.9729831 1103705.082 0.027817154 0.046089793 5.53E-06 5.257181728 0.359310846 RRGDDWNDREWDR ddPTM_HeLa_A485_30min_R1 2 RRGDDWNDREWDR 13 3 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ; ; 131.66 1.32E-05 594190000 37639 67659 37816 19812.4 43054 27181 28518 61680 23700 25792.9 FALSE FALSE TRUE 46011.6657 75571.13149 51805.71206 20894.70124 38767.39259 28604.15513 22424.89633 46552.88329 28456.37261 19363.20471 2.376242279 3.902821491 2.675472001 1.079093133 2.002116549 1.47724282 1.158119054 2.404193106 1.469610689 1 14.24103013 -5.084241834 5.024061871 1.582193804 3.176494111 0.620854455 0.532279727 0.129049867 5.535982661 0.137780707 0.249260321 8.24E-06 5.084241834 1.594300307 RRGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_A485_30min_R1 4 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRGDS(1)ES(1)EEDEQDSEEVR;RRGDS(1)ES(0.994)EEDEQDS(0.006)EEVR;RRGDS(1)ES(1)EEDEQDSEEVR;RRGDS(1)ES(0.743)EEDEQDS(0.257)EEVR ;;; 192.16 1.11E-17 27494300000 1837636 2212796 2111561 1987610 2846052 2183750 2748656 2961702 2108668 2571764 TRUE FALSE FALSE 2246411.788 2471563.243 2892715.283 2096188.101 2562689.07 2298087.773 2161383.191 2235339.941 2531858.326 1930670.565 1.163539668 1.280157935 1.498295637 1.085730595 1.32735699 1.19030549 1.119498702 1.157804952 1.31138806 1 20.88067058 -6.442056538 5.791490225 1.159488994 1.273392644 0.183796134 0.122873392 0.431257749 23.9818433 0.043412492 0.037846268 3.61E-07 6.442056538 0.11390365 RRGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_A486_30min_R1 6 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRGDS(0.974)ES(0.919)EEDEQDS(0.107)EEVR;RRGDS(0.998)ES(0.997)EEDEQDS(0.005)EEVR;RRGDS(0.942)ES(0.887)EEDEQDS(0.171)EEVR;RRGDS(1)ES(0.999)EEDEQDS(0.001)EEVR;RRGDS(0.998)ES(0.957)EEDEQDS(0.045)EEVR;RRGDS(0.998)ES(0.973)EEDEQDS(0.028)EEVR ;;;;; 208.43 4.13E-24 17997750000 2085409 2524062 1904019 1002215 2720760 2349329 2675808 2781219 2182347 2522973 TRUE FALSE FALSE 1939232.598 2324046.135 2641306.148 2333207.169 2379496.911 2059492.674 2006292.537 2147996.147 2371514.595 1891204.139 1.025395703 1.228871113 1.396626675 1.233715135 1.258191467 1.08898486 1.060854561 1.135782279 1.253970709 1 20.85087367 -6.260188265 24.98816727 1.113463377 1.238200736 0.249877186 0.103620858 169.8130405 3391654.804 0.036325583 0.034488544 5.49E-07 6.260188265 0.12473736 RRGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_A485_30min_R1 2 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRGDS(0.995)ES(0.312)EEDEQDS(0.693)EEVR;RRGDS(0.997)ES(0.013)EEDEQDS(0.99)EEVR ; 240.01 6.56E-44 27146800000 2501940 2991570 2739410 2854150 3838400 2899210 4148900 4491200 2880900 3871400 TRUE FALSE FALSE 3058487.921 3341408.088 3752831.755 3010064.987 3456235.419 3051008.153 3262453.622 3389726.158 3459070.205 2906331.228 1.052353528 1.149699682 1.291260858 1.035692339 1.189209057 1.049779916 1.122533313 1.16632479 1.19018444 1 21.4707677 RRGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_A486_30min_R1 1 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRGDS(0.944)ES(0.099)EEDEQDS(0.957)EEVR 149.94 1.23E-07 1172400000 522130 630690 532540 218290 735120 597860 651410 659200 503720 612920 TRUE FALSE FALSE 485531.3833 580711.8275 738753.7499 508190.1518 642914.3949 524102.1118 488420.3281 509114.5502 547382.8552 459440.8426 1.056787595 1.263953427 1.607940961 1.106105737 1.399340971 1.140739053 1.063075554 1.108117745 1.19141096 1 18.80951959 -6.427308967 6.199247363 1.099881649 1.292781888 0.283998379 0.148972317 0.325311404 17.5074329 0.053009752 0.04642219 3.74E-07 6.427308967 0.192900239 RRGDSES(ph)EEDEQDSEEVR ddPTM_HeLa_A485_30min_R1 1 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 RRGDS(0.031)ES(0.969)EEDEQDSEEVR 92.518 0.00046725 393200000 127700 180570 189130 111520 167430 199850 179970 228430 142000 144060 TRUE FALSE FALSE 156106.4244 201686.0907 259097.0574 117612.0552 150760.0813 210313.837 141517.9393 172407.1843 170498.0975 108148.4932 1.443445209 1.864899683 2.395752817 1.08750526 1.394010003 1.944676534 1.308552113 1.594170933 1.576518474 1 16.72265404 -11.56517629 0.15328509 1.64E-09 1.873661799 0.241618631 0.346382983 82.7906264 1.52094432 30.51202998 1.976700167 2.72E-12 11.56517629 1.873661797 RRGDSES(ph)EEDEQDSEEVR ddPTM_HeLa_A486_30min_R1 1 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 RRGDS(0.09)ES(0.91)EEDEQDSEEVR 113.89 5.73E-05 336480000 61758 76741 60176 24386 85812 72060 78203 93513 62681 79706 TRUE FALSE FALSE 57429.08312 70659.76367 83477.75877 56771.8404 75048.65879 63169.96985 58635.78225 72222.13127 68114.23955 59747.0988 0.961202875 1.182647611 1.397185143 0.950202462 1.25610549 1.057289327 0.981399657 1.208797293 1.140042628 1 15.86658104 RRGEEGHDPKEPEQLR ddPTM_HeLa_A485_30min_R1 3 RRGEEGHDPKEPEQLR 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ;; ;; 82.259 0.0010528 581860000 253286 277178 248896 284683 312359 271146 355684 480120 272377 425990 FALSE FALSE TRUE 309628.5969 309591.556 340972.9878 300234.5114 281259.4412 285342.7853 279689.2077 362369.8172 327040.5655 319798.5328 0.968198929 0.968083103 1.066211858 0.938823918 0.879489467 0.892257956 0.874579396 1.133119074 1.02264561 1 18.28680379 -7.259433313 24.99999621 1.058411755 0.9426077 0.402908178 0.061656641 187.4862071 2336521.265 0.03339671 0.018019498 5.50E-08 7.259433313 -0.115804055 RRGEEGHDPKEPEQLR ddPTM_HeLa_A486_30min_R1 4 RRGEEGHDPKEPEQLR 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ;;; ;;; 68.329 0.0033683 984930000 562604 404127 353581 266982 571892 550528 598453 565400 300673 704580 FALSE FALSE TRUE 523168.3649 372102.5047 490497.0324 621547.5885 500159.9727 482609.4527 448713.7296 436670.7626 326735.5777 528148.582 0.990570424 0.704541331 0.928710308 1.176842294 0.947006183 0.913775913 0.849597528 0.826795295 0.618643293 1 19.01058433 -6.871797422 2.137834121 0.794749329 0.945690396 0.157024884 0.137151301 0.583720755 5.410387336 0.074911386 0.044428306 1.34E-07 6.871797422 0.150941067 RRGFCFITFK ddPTM_HeLa_A485_30min_R1 1 RRGFCFITFK 10 2 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 93.111 0.013618 17818000 17409 51414 25446 19688 27023 52020 68633 93274 16068 32776 FALSE FALSE TRUE 21281.57199 57426.42006 34859.5343 20763.50559 24332.49524 54743.68676 53968.99887 70398.40525 19292.70022 24605.5464 0.864909547 2.333881115 1.416734818 0.843854684 0.988902861 2.224851498 2.193367219 2.861078722 0.784079325 1 14.58669593 -6.265319535 24.89567091 1.95278601 1.329962208 0.107111663 0.6938912 623.5774112 4000952.596 0.238937348 0.218615298 5.43E-07 6.265319535 -0.622823802 RRGFCFITFK ddPTM_HeLa_A486_30min_R1 1 RRGFCFITFK 10 2 Q14103-3;Q14103;H0YA96;H0Y8G5;Q14103-4;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 81.338 0.027906 8803900 17474 17260 11482 7149.3 17966 15790 26562 19117 13195 42438 FALSE FALSE TRUE 16249.16284 15892.25474 15928.1379 16643.93171 15712.53675 13841.99034 19915.90666 14764.47642 14338.75322 31811.24857 0.510799279 0.499579723 0.500707725 0.523209005 0.493930212 0.435128798 0.626064916 0.464127536 0.450744748 1 14.95724938 -10.51211285 3.262219758 1.012762652 0.501635992 0.901570346 0.049514035 20272558.91 26614464.33 2323552.961 0.012063333 3.08E-11 10.51211285 -0.51112666 RRGFVFITFK ddPTM_HeLa_A485_30min_R1 1 RRGFVFITFK 10 2 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 87.913 0.01956 8674800 19796 25979 10866 10621 9755.5 17358 29235 39779 6044.1 17329 FALSE FALSE TRUE 24199.5519 29017.01806 14885.78557 11201.19834 8784.208166 18266.83804 22988.70342 30023.13788 7257.09543 13009.19922 1.860187664 2.230499939 1.14425072 0.861021355 0.675230506 1.404147768 1.767111337 2.307839044 0.557843362 1 13.66724454 -6.532263619 24.23514907 1.526962804 1.331436042 0 0.604909043 834.3401555 2154536.653 0.245686419 0.190594004 2.94E-07 6.532263619 -0.195526762 RRGNDPLT(ph)SSPGR ddPTM_HeLa_A485_30min_R1 1 RRGNDPLTSSPGR 13 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RRGNDPLT(0.958)S(0.033)S(0.009)PGR 84.829 0.012587 11818000000 705850 1702000 1287900 608480 1697000 1848600 2026700 2890500 1138800 889470 TRUE FALSE FALSE 862863.8973 1901034.095 1764347.804 641719.7216 1528040.721 1945389.838 1593678.988 2181600.343 1367346.714 667741.4985 1.292212479 2.846961135 2.642261726 0.961030164 2.28837166 2.913387654 2.386670578 3.267133086 2.047718642 1 19.34893018 -5.993067636 24.97549071 2.483349713 1.997876443 0.033754386 0.768627719 469.643914 1691987.618 0.233231375 0.263854159 1.02E-06 5.993067636 -0.48547327 RRGNDPLTS(ph)SPGR ddPTM_HeLa_A485_30min_R1 1 RRGNDPLTSSPGR 13 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RRGNDPLT(0.274)S(0.363)S(0.363)PGR 51.265 0.036343 2410900000 559300 1481700 1040700 422940 1365800 1417200 1509100 2304600 811680 667320 TRUE FALSE FALSE 683714.3554 1654971.926 1425698.237 446044.1413 1229816.156 1491402.401 1186668.457 1739393.237 974576.7308 500969.4051 1.364782656 3.303538917 2.845878855 0.890362039 2.45487278 2.977032899 2.368744368 3.472054818 1.945381736 1 18.93436297 -5.977089289 24.99927963 2.531242306 2.169271646 0.000475967 0.884611242 986.2385818 1076140.188 0.270908859 0.307165663 1.05E-06 5.977089289 -0.36197066 RRGNDPLTS(ph)SPGR ddPTM_HeLa_A486_30min_R1 1 RRGNDPLTSSPGR 13 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RRGNDPLTS(0.628)S(0.372)PGR 87.138 0.00082922 207810000 16012 11724 15930 7712.7 22661 9952.3 17694 15881 10861 21848 TRUE FALSE FALSE 14889.64149 10794.94754 22098.52262 17955.55538 19818.64607 8724.486414 13266.77405 12265.24298 11802.44022 16377.11859 0.909173454 0.659148157 1.34935352 1.096380616 1.210142429 0.53272414 0.810079867 0.748925576 0.720666469 1 13.99939393 -6.255449222 24.99637381 0.749762099 1.043193152 0.329403399 0.201021644 607.5214498 2535132.556 0.069374401 0.067674562 5.55E-07 6.255449222 0.293431053 RRGNDPLTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 3 RRGNDPLTSSPGR 13 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RRGNDPLTS(0.055)S(0.945)PGR;RRGNDPLTS(0.181)S(0.819)PGR;RRGNDPLT(0.202)S(0.311)S(0.487)PGR ;; 154.88 1.42E-08 1722329000 263007.8 667914.8 499467.8 189805.8 600597 642348 656864.8 1045101 396258.6 281139 TRUE FALSE FALSE 321512.9777 746021.6258 684241.7238 200174.4102 540799.4539 675980.348 516520.2694 788788.3411 475784.0663 211056.2213 1.523352289 3.534705688 3.241987939 0.948441174 2.562347845 3.202844929 2.447311272 3.737337551 2.254300126 1 17.68726783 -5.99666568 24.98109494 2.715290299 2.377059268 0 0.967824763 505.4667722 3786950.589 0.29806323 0.336319209 1.01E-06 5.99666568 -0.338231032 RRGNDPLTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 RRGNDPLTSSPGR 13 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RRGNDPLTS(0.206)S(0.793)PGR 86.455 0.00085409 92236000 17947 16796 21540 7540 33889 19815 22962 27318 21239 18245 TRUE FALSE FALSE 16689.00798 15465.02379 29880.86486 17553.50105 29638.32562 17370.42676 17216.66473 21098.28775 23080.01362 13676.33324 1.220283806 1.130787289 2.184859372 1.283494686 2.167125141 1.270108475 1.258865547 1.542685994 1.687587836 1 13.73939386 RRGS(ph)S(ph)GSVDETLFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 2 0 RRGS(0.693)S(0.678)GS(0.576)VDET(0.052)LFALPAASEPVIR 77.175 0.02426 1171600000 179560 247550 262150 86906 257150 193390 202220 230660 207230 178080 TRUE FALSE FALSE 219502.5025 276498.8191 359130.194 91653.45472 231547.2431 203515.6014 159014.045 174090.2733 248819.1602 133687.9333 1.64190213 2.068240657 2.686332155 0.685577617 1.731998074 1.522318405 1.189442017 1.302213813 1.861193856 1 17.02850973 -5.256269546 24.99743935 1.359341821 2.12576651 0.460532339 0.398016605 402.3502116 1945458.206 0.10694804 0.178304616 5.54E-06 5.256269546 0.766424689 RRGS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RRGS(0.317)S(0.317)GS(0.317)VDET(0.05)LFALPAASEPVIR 179.58 1.06E-20 583170000 229780 309230 270200 153430 284660 274810 299160 415620 204750 275810 TRUE FALSE FALSE 280893.7683 345391.7586 370158.224 161811.4924 256318.2509 289198.6267 235242.0221 313688.5433 245841.4469 207055.6429 1.356610061 1.668110821 1.787723429 0.781487962 1.237919659 1.396719368 1.136129491 1.51499635 1.187320681 1 17.659659 -1 0.201670413 1.121592119 3.276794603 0.176532022 0.262059043 100.0803234 1.21434926 0.498217897 68.35959983 0.1 1 2.155202484 RRGS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_A486_30min_R1 2 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RRGS(0.6)S(0.198)GS(0.198)VDET(0.005)LFALPAASEPVIR;RRGS(0.365)S(0.365)GS(0.232)VDET(0.038)LFALPAASEPVIR ; 204.88 8.54E-29 866020000 611740 559790 556970 193154 754230 452880 584750 557880 463630 550060 TRUE FALSE FALSE 568860.185 515430.2017 772643.7002 449672.2735 659627.4405 397008.2701 438439.3651 430862.9024 503817.8217 412321.3957 1.379652356 1.250069017 1.873886993 1.090586805 1.599789502 0.962861191 1.063343716 1.044968578 1.221905598 1 18.6534098 -6.267855368 24.98885516 1.061721838 1.433138715 0.465135663 0.203782692 477.0998735 1858193.031 0.067951216 0.061376051 5.40E-07 6.267855368 0.371416876 RRGSS(ph)GSVDETLFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RRGS(0.245)S(0.364)GS(0.364)VDET(0.027)LFALPAASEPVIR 148.66 1.87E-09 623680000 120930 164060 127090 96900 158470 136480 167820 238220 120460 144230 TRUE FALSE FALSE 147830.4613 183245.3899 174105.8797 102193.4016 142692.1704 143625.8818 131963.886 179796.1715 144635.2171 108276.1154 1.365309984 1.692389769 1.607980477 0.943822202 1.317854542 1.326477971 1.218771893 1.660534005 1.335799835 1 16.72435551 RRGSS(ph)GSVDETLFALPAASEPVIR ddPTM_HeLa_A486_30min_R1 2 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RRGS(0.261)S(0.362)GS(0.362)VDET(0.014)LFALPAASEPVIR;RRGS(0.237)S(0.349)GS(0.349)VDET(0.064)LFALPAASEPVIR ; 168.57 1.73E-14 890640000 241010 196659 207290 63773 270810 162297 238173 202019 176980 230740 TRUE FALSE FALSE 224116.4436 181075.0246 287558.2394 148466.7669 236842.4846 142274.4463 178579.5963 156023.6837 192320.7689 172961.2021 1.295761366 1.046911229 1.662559209 0.858381909 1.369338798 0.822580119 1.032483552 0.902073308 1.111930112 1 17.40008893 -5.885877804 1.364030649 0.980952168 1.273841231 0.242420226 0.216434 0.588278787 2.283865487 0.082760339 0.103341396 1.30E-06 5.885877804 0.292889063 RRGSSGS(ph)VDETLFALPAASEPVIR ddPTM_HeLa_A485_30min_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RRGS(0.094)S(0.133)GS(0.764)VDET(0.009)LFALPAASEPVIR 155.14 7.93E-10 545270000 45427 78727 55322 41311 66699 60913 74698 93721 49643 71103 TRUE FALSE FALSE 55532.07943 87933.43782 75787.90994 43567.71533 60058.21337 64102.31049 58738.16207 70735.7778 59605.89475 53378.33065 1.040348747 1.64736208 1.419825405 0.81620603 1.125142218 1.200905118 1.100412121 1.325177782 1.116668394 1 15.70396657 -5.169572092 24.99978944 1.116861308 1.396999788 0.30259819 0.185809432 72.47453607 19719.14968 0.049486037 0.085712328 6.77E-06 5.169572092 0.28013848 RRHAS(ph)APSHVQPSDSEK ddPTM_HeLa_A485_30min_R1 1 RRHASAPSHVQPSDSEK 17 2 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 RRHAS(0.499)APS(0.499)HVQPS(0.002)DSEK 76.151 0.0020477 168260000 24590 110020 45775 13409 61299 114460 134140 286220 36482 29063 TRUE FALSE FALSE 30059.96067 122885.882 62709.07736 14141.49972 55195.85633 120452.9486 105479.8932 216024.0962 43803.60277 21818.12896 1.377751535 5.632283233 2.874173008 0.64815364 2.52981621 5.520773518 4.834506815 9.901128395 2.00766999 1 14.41323977 -6.259364385 23.86697899 5.220492039 2.685618903 0.119063639 2.547287374 170.1289181 1956861.754 0.841758544 0.80183256 5.50E-07 6.259364385 -2.534873136 RRHAS(ph)APSHVQPSDSEK ddPTM_HeLa_A486_30min_R1 1 RRHASAPSHVQPSDSEK 17 2 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 RRHAS(0.465)APS(0.465)HVQPS(0.068)DS(0.002)EK 40.179 0.030995 121280000 85471 53693 37653 8305.5 60800 43338 63487 67372 39641 74406 TRUE FALSE FALSE 79479.92427 49438.17113 52233.24998 19335.62374 53173.89706 37991.39819 47601.8811 52032.86632 43077.1138 55774.2533 1.425028926 0.886397723 0.936511865 0.346676515 0.953377121 0.681163726 0.853474108 0.932919102 0.772347656 1 15.76731167 -1.951368337 8.785255988 0.859839181 0.987490023 0 0.257432458 0 0 0.058286009 0 0.011184889 1.951368337 0.127650842 RRHASAPS(ph)HVQPSDSEK ddPTM_HeLa_A485_30min_R1 1 RRHASAPSHVQPSDSEK 17 2 O60343-2;A0A3B3IRT3;O60343-3;O60343 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 RRHAS(0.392)APS(0.608)HVQPSDSEK 133.09 4.38E-06 63730000 43635 191100 69715 24106 95325 192470 213760 482410 65039 34898 TRUE FALSE FALSE 53341.45521 213447.4827 95505.47958 25422.84974 85834.10829 202547.4316 168088.4297 364098.1911 78091.73073 26198.57085 2.036044467 8.147294899 3.645446163 0.970390709 3.276289718 7.731239721 6.415938896 13.89763561 2.980763003 1 14.67720049 -6.260700095 24.90295961 7.211894206 3.721640455 0.108791493 3.637219745 113.9137319 3837256.769 1.208786533 1.141247039 5.49E-07 6.260700095 -3.490253751 RRHDS(ph)LHDPAAPSR ddPTM_HeLa_A485_30min_R1 5 RRHDSLHDPAAPSR 14 2 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 RRHDS(1)LHDPAAPSR;RRHDS(1)LHDPAAPSR;RRHDS(1)LHDPAAPSR;RRHDS(1)LHDPAAPSR;RRHDS(1)LHDPAAPSR ;;;; 88.264 0.00068171 1104074000 228325 413478 338517 199228 397917 328660 413153 613881 357861 285977 TRUE FALSE FALSE 279115.1085 461830.6553 463748.5252 210111.3212 358298.9863 345868.1294 324879.4864 463325.7222 429680.4202 214688.1969 1.300095266 2.151169286 2.160102567 0.978681288 1.66892727 1.611025358 1.513261982 2.158133185 2.00141613 1 17.71188335 RRHDS(ph)LHDPAAPSR ddPTM_HeLa_A486_30min_R1 3 RRHDSLHDPAAPSR 14 2 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 RRHDS(1)LHDPAAPSR;RRHDS(1)LHDPAAPSR;RRHDS(1)LHDPAAPSR ;; 102.08 0.00021377 615706000 164594 118594 150304 38864.9 204881 128634 163298 159814 106320 159933 TRUE FALSE FALSE 153056.8106 109196.1795 208505.7341 90479.45132 179182.9145 112764.4449 122439.1132 123427.8409 115535.9032 119884.7358 1.276699736 0.910843059 1.739218364 0.754720363 1.494626596 0.940607194 1.021306944 1.029554264 0.963724885 1 16.87128846 -6.349894497 24.99999975 0.994776894 1.218553172 0.181339583 0.258138821 132.982645 37580.85532 0.084757736 0.074749305 4.47E-07 6.349894497 0.223776278 RRHES(ph)EEGDSHR ddPTM_HeLa_A485_30min_R1 4 RRHESEEGDSHR 12 2 Q6UN15-5;Q6UN15;Q6UN15-3;H0Y8P7 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 RRHES(1)EEGDSHR;RRHES(1)EEGDSHR;RRHES(1)EEGDSHR;RRHES(1)EEGDSHR ;;; 134.14 7.47E-06 354663000 58064 54600 29413.8 81512 29345.5 74623 59139 53241 63412 90649 TRUE FALSE FALSE 70980.13648 60984.99504 40295.18863 85964.79416 26423.75898 78530.14489 46503.46953 40183.56127 76138.20675 68051.87257 1.04302988 0.896154547 0.592124612 1.263224521 0.388288492 1.153974783 0.683353268 0.590484284 1.118826035 1 16.05434724 -4.346111936 4.275529589 0.832738457 1.04484834 0.040272872 0.271286178 0.644452144 19.47617063 0.06291387 0.319505283 4.51E-05 4.346111936 0.212109883 RRHES(ph)EEGDSHR ddPTM_HeLa_A486_30min_R1 4 RRHESEEGDSHR 12 2 Q6UN15-5;Q6UN15;Q6UN15-3;H0Y8P7 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 RRHES(1)EEGDSHR;RRHES(1)EEGDSHR;RRHES(1)EEGDSHR;RRHES(1)EEGDSHR ;;; 68.944 0.0050165 188919300 55845.7 39944.6 41132.8 11914.6 15152.9 75840 33682.5 33797.1 86086 72099 TRUE FALSE FALSE 51931.20482 36779.24442 57060.52173 27737.79093 13252.28199 66483.63188 25254.78224 26102.23812 93548.00379 54044.94111 0.960889285 0.680530752 1.055797648 0.513235658 0.245208556 1.230154581 0.467292252 0.482972829 1.730929887 1 15.72187196 -7.75370057 24.99986643 1.365465013 0.703348785 0.391575022 0.329552138 152.3405315 492140.5209 0.225311753 0.081622536 1.76E-08 7.75370057 -0.662116228 RRHES(ph)EEGDSHRR ddPTM_HeLa_A485_30min_R1 3 RRHESEEGDSHRR 13 3 Q6UN15-5;Q6UN15;Q6UN15-3;H0Y8P7 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 RRHES(1)EEGDSHRR;RRHES(1)EEGDSHRR;RRHES(1)EEGDSHRR ;; 186.72 2.76E-17 436414500 72507.6 138539.7 71513 34844.8 80135.5 89463.9 28945.94 213378 45513.8 48759.1 TRUE FALSE FALSE 88636.66547 154740.7128 97968.6346 36748.28319 72156.92825 94148.09147 22761.40345 161046.7109 54648.00218 36604.35371 2.421478772 4.227385463 2.67642028 1.003932032 1.971266282 2.572046271 0.621822301 4.399660002 1.492937223 1 15.15972763 -5.000465576 24.98427305 1.97808226 3.356300087 0.224860927 1.08765709 24.79510031 1330911.68 0.274081001 0.560477969 9.99E-06 5.000465576 1.378217827 RRHES(ph)EEGDSHRR ddPTM_HeLa_A486_30min_R1 2 RRHESEEGDSHRR 13 3 Q6UN15-5;Q6UN15;Q6UN15-3;H0Y8P7 Q6UN15-5 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 RRHES(1)EEGDSHRR;RRHES(1)EEGDSHRR ; 185.14 3.18E-17 222548000 224723 80636 80118 52350 154081 74766 42442.2 52959 10671.8 49180 TRUE FALSE FALSE 208971.0782 74246.10969 111141.8352 121873.4456 134754.7242 65542.13108 31822.71265 40901.39179 11596.84022 36865.00789 5.66854831 2.01399956 3.014832807 3.305938411 3.655355904 1.777895485 0.863222727 1.109490927 0.314575824 1 15.16996445 -6.455493853 2.782156393 0.831939848 3.411946345 0.68000128 0.879403847 0.170012252 2.592418041 0.342384318 0.282121122 3.50E-07 6.455493853 2.580006497 RRHS(ph)DENDGGQPHK ddPTM_HeLa_A485_30min_R1 1 RRHSDENDGGQPHK 14 2 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RRHS(1)DENDGGQPHK 145.43 3.33E-08 48008000 48063 27944 12305 70419 13678 43429 25090 32659 30750 56524 TRUE FALSE FALSE 58754.44853 31211.80772 16857.13155 74265.81166 12316.17029 45702.87529 19729.31653 24649.32904 36921.24294 42433.60705 1.384620649 0.735544534 0.397258982 1.750164948 0.29024566 1.077044316 0.464945544 0.580891674 0.870094378 1 15.3729197 RRHS(ph)DENDGGQPHKR ddPTM_HeLa_A485_30min_R1 2 RRHSDENDGGQPHKR 15 3 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RRHS(1)DENDGGQPHKR;RRHS(1)DENDGGQPHKR ; 153.04 1.54E-08 165289000 60487 73213 21785.3 38479.4 27967.9 93069 69799 109841 39254.5 53483 TRUE FALSE FALSE 73942.12447 81774.62348 29844.58903 40581.43219 25183.31767 97941.94893 54885.87344 82902.32253 47132.51809 40150.67238 1.841616095 2.03669375 0.743314801 1.010728583 0.627220322 2.439360118 1.366997616 2.064780429 1.173891128 1 15.29313653 -6.24775734 24.99538766 1.660429184 1.253858844 0.087161392 0.565681383 1953.697444 3569163.855 0.191473914 0.190508625 5.65E-07 6.24775734 -0.40657034 RRHS(ph)DENDGGQPHKR ddPTM_HeLa_A486_30min_R1 4 RRHSDENDGGQPHKR 15 3 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RRHS(1)DENDGGQPHKR;RRHS(1)DENDGGQPHKR;RRHS(1)DENDGGQPHKR;RRHS(1)DENDGGQPHKR ;;; 148.19 2.63E-08 164462000 157377 56353.3 48717.7 31102.6 37212.3 84755.7 59389.1 66467.5 48302.7 115210 TRUE FALSE FALSE 146345.685 51887.65927 67582.49815 72408.42464 32544.78634 74299.40347 44529.31903 51334.30123 52489.61693 86360.66611 1.694587265 0.60082514 0.782561103 0.838442174 0.376847329 0.860338471 0.515620375 0.594417616 0.607795415 1 16.39808675 -4.259002544 24.78842356 0.671836546 1.694587672 0.746659083 0.176011744 91.1341934 926987.5687 0.04113212 0.269291524 5.51E-05 4.259002544 1.022751126 RRHS(ph)EQVANGPTPPPR ddPTM_HeLa_A486_30min_R1 1 RRHSEQVANGPTPPPR 16 2 A6ND36;A6ND36-2;K7EKG0 A6ND36 FAM83G Protein FAM83G 1 0 RRHS(1)EQVANGPTPPPR 65.808 0.0061624 27762000 70532 84685 71583 11244 86571 71382 70950 69260 71909 45682 TRUE FALSE FALSE 65588.07103 77974.25218 99301.85466 26176.60024 75712.45794 62575.6146 53197.55957 53491.00994 78142.13002 34242.92986 1.915375562 2.277090556 2.899922847 0.7644381 2.211039133 1.82740247 1.55353411 1.562103773 2.28199311 1 15.06351853 -9.550822012 0.099108829 9.19E-12 2.762849465 0.208673964 0.53919152 74.71745079 1.791663192 36.8260122 14.51183357 2.81E-10 9.550822012 2.762849465 RRHS(ph)SETFSSTPSATR ddPTM_HeLa_A485_30min_R1 1 RRHSSETFSSTPSATR 16 2 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 RRHS(0.311)S(0.311)ET(0.311)FS(0.064)S(0.003)TPSATR 53.169 0.01921 31217000 7732.8 20839 14649 4046.7 16339 18945 18655 36993 11380 7004.9 TRUE FALSE FALSE 9452.934682 23275.93977 20068.2747 4267.760974 14712.23179 19936.93091 14669.20685 27920.40875 13663.86162 5258.707346 1.797577629 4.426171347 3.816199187 0.811560844 2.797689779 3.791222746 2.789508122 5.309367286 2.598330867 1 12.3604925 -6.164839846 10.50278993 3.347473397 2.776670663 0.000817275 1.380255958 2.177573858 225.5905385 0.453331145 0.453448384 6.84E-07 6.164839846 -0.570802734 RRHT(ph)MDKDSR ddPTM_HeLa_A485_30min_R1 2 RRHTMDKDSR 10 3 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 RRHT(1)MDKDSR;RRHT(1)MDKDSR ; 151.74 1.30E-06 59897000 26649 15572.8 9498.9 29352 14585.2 34233 22243.4 25105 17529.5 33423 TRUE FALSE FALSE 32576.97811 17393.90349 13012.93839 30955.42544 13133.04628 36025.38695 17490.91588 18947.95939 21047.50986 25091.2612 1.298339603 0.693225556 0.518624324 1.233713411 0.523411166 1.435774258 0.697091937 0.755161697 0.838838259 1 14.61489737 -11.6527191 1.821479498 2.890709854 0.87763366 0.01062083 0.308670482 15831317.59 607283.4248 123832239.1 0.074602284 2.22E-12 11.6527191 -2.013076195 RRHT(ph)MDKDSR ddPTM_HeLa_A486_30min_R1 2 RRHTMDKDSR 10 3 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 RRHT(1)MDKDSR;RRHT(1)MDKDSR ; 148.52 1.72E-06 63117000 36000 23234.7 20424.3 12525.4 12014.1 50235 23681 31914 57993 52842 TRUE FALSE FALSE 33476.5859 21393.49775 28333.13594 29159.7642 10507.17955 44037.51645 17755.76333 24647.87888 63019.87993 39610.01926 0.845154497 0.54010319 0.715302251 0.736171422 0.265265702 1.111777204 0.448264446 0.622263744 1.591008566 1 15.27357778 -7.746315257 24.99288828 1.295504234 0.655659619 0.502483851 0.252690629 151.8150988 250879.7868 0.159478001 0.059755697 1.79E-08 7.746315257 -0.639844615 RRIS(ph)YVQDENRDPIR ddPTM_HeLa_A485_30min_R1 2 RRISYVQDENRDPIR 15 3 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 1 0 RRIS(0.999)Y(0.001)VQDENRDPIR;RRIS(1)YVQDENRDPIR ; 136.49 4.85E-05 918980000 307830 383800 377180 320930 448340 347890 374090 372580 334470 410330 TRUE FALSE FALSE 376305.7215 428682.0714 516714.5778 338461.5933 403701.6954 366104.9825 294162.6155 281204.1708 401595.0611 308042.2826 1.22160412 1.391633862 1.677414456 1.098750439 1.310539878 1.188489383 0.954942331 0.912875234 1.303701095 1 18.23276887 -6.06798131 1.205741051 1.041807 1.397628804 0.408336026 0.168629006 0.44955197 1.361906274 0.07908565 0.084967071 8.55E-07 6.06798131 0.355821805 RRIS(ph)YVQDENRDPIR ddPTM_HeLa_A486_30min_R1 4 RRISYVQDENRDPIR 15 3 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 1 0 RRIS(1)YVQDENRDPIR;RRIS(1)YVQDENRDPIR;RRIS(0.992)Y(0.008)VQDENRDPIR;RRIS(1)YVQDENRDPIR ;;; 145.71 4.58E-07 1935740000 887370 932170 925950 292539 1058320 799880 974720 973050 801890 903450 TRUE FALSE FALSE 825169.9454 858301.4543 1284502.638 681045.5761 925575.6372 701198.9382 730834.7465 751507.7565 871398.4709 677220.2395 1.218466161 1.267388959 1.89672807 1.005648586 1.366727666 1.035407534 1.079168495 1.109694768 1.286728334 1 19.36926556 RRKEDEVEEWQHR ddPTM_HeLa_A485_30min_R1 4 RRKEDEVEEWQHR 13 3 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;; ;;; 218.85 9.29E-28 966390000 705230 702480 280204 285587 212818 180054 147430 704290 195914 463167 FALSE FALSE TRUE 862105.9805 784628.9252 383863.1199 301187.8947 191629.0927 189481.349 115930.3761 531561.7732 235232.1428 347707.9909 2.479396514 2.256574326 1.1039813 0.866209298 0.551120761 0.544943901 0.333413034 1.528759152 0.676522108 1 18.4075167 -4.789369005 2.579345278 0.772517257 2.486461446 0.806597567 0.306382724 0.116408374 1.531709404 0.08712819 0.267906117 1.62E-05 4.789369005 1.713944188 RRKEDEVEEWQHR ddPTM_HeLa_A486_30min_R1 2 RRKEDEVEEWQHR 13 3 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ; ; 172.76 1.08E-12 205330000 269090 11495.2 20408.4 74938 92601 28506 15878.9 21156.5 8192.2 50303 FALSE FALSE TRUE 250228.1806 10584.27849 28311.07904 174459.4512 80986.11911 24989.21955 11905.83127 16339.62679 8902.306492 37706.80138 6.636155054 0.280699452 0.750821549 4.626736948 2.147785443 0.662724459 0.31574758 0.433333674 0.236092858 1 15.20253715 -6.206387896 3.773767633 0.462126714 2.769515611 0.32654253 1.707178008 0.315685314 9.21821175 0.594700729 0.579593298 6.22E-07 6.206387896 2.307388897 RRKS(ph)EPAVGPPR ddPTM_HeLa_A485_30min_R1 2 RRKSEPAVGPPR 12 3 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RRKS(1)EPAVGPPR;RRKS(1)EPAVGPPR ; 138.73 4.22E-05 149092000 96530 127979 136298 104238 177254 146326 193609 246790 137060 166463 TRUE FALSE FALSE 118002.7655 142945.0308 186720.302 109932.258 159605.9694 153987.4031 152242.8555 186264.3655 164566.6848 124966.8376 0.944272638 1.143863712 1.494158815 0.879691445 1.277186591 1.232226133 1.218266049 1.490510355 1.316882846 1 16.93118577 -5.916791759 24.99852709 1.277425792 1.136303368 0.106057782 0.189819351 61.80599067 18562.04613 0.058636815 0.066487897 1.21E-06 5.916791759 -0.141122424 RRKS(ph)EPAVGPPR ddPTM_HeLa_A486_30min_R1 3 RRKSEPAVGPPR 12 3 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RRKS(1)EPAVGPPR;RRKS(1)EPAVGPPR;RRKS(1)EPAVGPPR ;; 135.61 8.92E-05 357555000 172807 169665 155907 82006 252458 176537 229671 236489 150928 204344 TRUE FALSE FALSE 160694.1217 156220.1275 216278.3657 190914.1124 220792.3636 154757.6598 172204.8866 182645.6172 164010.5606 153174.9323 1.049088903 1.019880506 1.411969716 1.246379609 1.441439276 1.01033281 1.12423674 1.192398876 1.070740219 1 17.22482069 -6.313422068 24.99964593 1.094360123 1.232473518 0.242826118 0.134881921 614.5371356 295542.7237 0.05044513 0.044488485 4.86E-07 6.313422068 0.138113396 RRLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPT(ph)PR ddPTM_HeLa_A485_30min_R1 1 RRLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPTPR 38 2 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 RRLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPT(0.998)PR 82.472 0.00031592 344910000 46079 79041 72336 43558 97755 82993 107380 142000 64245 62503 TRUE FALSE FALSE 56329.11458 88284.15738 99096.09655 45937.46325 88022.16896 87338.38515 84437.38579 107174.2774 77138.38221 46922.15238 1.200480194 1.881502721 2.111925637 0.979014408 1.875919251 1.861346522 1.799520727 2.28408698 1.643965127 1 15.51798157 RRLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPT(ph)PR ddPTM_HeLa_A486_30min_R1 1 RRLEDQAATPTGLGSLTPSAAGSTASLVGVGLPPPTPR 38 2 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 RRLEDQAATPT(0.001)GLGS(0.002)LT(0.002)PS(0.002)AAGS(0.002)T(0.002)AS(0.002)LVGVGLPPPT(0.985)PR 79.739 0.00050985 286430000 38303 39825 42123 19395 56862 41911 48928 50802 38809 47930 TRUE FALSE FALSE 35618.1575 36669.12196 58434.15369 45152.54017 49729.83774 36740.44694 36685.69689 39235.4936 42172.99537 35928.01603 0.991375574 1.020627522 1.626423058 1.256750168 1.38415207 1.022612741 1.021088859 1.092058453 1.173819209 1 15.13282165 -6.27610546 24.69594815 1.065117808 1.263432554 0.238080376 0.17316946 1114.310629 1876361.208 0.064638774 0.057260593 5.30E-07 6.27610546 0.198314746 RRLPGLSMS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RRLPGLSMSPR 11 2 H0YFW5 H0YFW5 MSRB3 1 0 RRLPGLS(0.004)MS(0.996)PR;RRLPGLS(0.003)MS(0.997)PR ; 54.343 0.030847 1038130000 516710 458730 650910 953530 1243800 581570 926650 878860 660760 1232960 TRUE FALSE FALSE 631650.3569 512374.4831 891708.6956 1005618.929 1119962.905 612020.1059 728663.6575 663318.207 793368.4712 925605.7629 0.682418349 0.553555848 0.963378504 1.08644411 1.209978319 0.661210345 0.787228955 0.716631458 0.857134325 1 19.82003832 -4.762034073 24.99969759 0.9038397 0.617987046 0.345869278 0.160578683 18.57568512 781047.9966 0.046361382 0.106877566 1.73E-05 4.762034073 -0.285852654 RRLPGLSMS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RRLPGLSMSPR 11 2 H0YFW5 H0YFW5 MSRB3 1 0 RRLPGLS(0.001)MS(0.999)PR;RRLPGLS(0.002)MS(0.998)PR ; 58.511 0.024651 913510000 448370 1024720 931180 508200 1457280 1137240 1410700 1423820 781290 849240 TRUE FALSE FALSE 416941.5784 943517.4552 1291757.834 1183115.283 1274494.354 996938.8914 1057727.939 1099647.268 849012.8463 636584.7764 0.654966304 1.482155229 2.029200009 1.858535307 2.002081107 1.566074038 1.6615665 1.727416848 1.333699576 1 19.27999313 -7.999369502 3.495331794 1.001563288 1.650579362 0.220096049 0.366784109 0.314011276 9.748415712 0.366603822 0.097120222 1.00E-08 7.999369502 0.649016075 RRLS(ph)ESSALK ddPTM_HeLa_A485_30min_R1 3 RRLSESSALK 10 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RRLS(0.912)ES(0.075)S(0.013)ALK;RRLS(0.946)ES(0.053)S(0.002)ALK;RRLS(0.535)ES(0.296)S(0.169)ALK ;; 92.636 0.0020135 815780000 552590 556380 581460 742510 713030 528730 701170 611410 513170 771470 TRUE FALSE FALSE 675511.7391 621443.8011 796566.2506 783071.4412 642038.2296 556413.4852 551359.3015 461460.7388 616158.5119 579156.7269 1.166371222 1.073014907 1.375389793 1.352089003 1.108574242 0.96073042 0.952003622 0.796780418 1.063889071 1 19.14359429 -6.102092267 3.161529088 0.940888696 1.239043113 0.630573559 0.102942698 0.173234647 3.299703547 0.03767935 0.038473555 7.91E-07 6.102092267 0.298154418 RRLS(ph)ESSALK ddPTM_HeLa_A486_30min_R1 3 RRLSESSALK 10 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RRLS(0.651)ES(0.235)S(0.114)ALK;RRLS(0.988)ES(0.011)S(0.001)ALK;RRLS(0.862)ES(0.12)S(0.018)ALK ;; 138.21 1.98E-05 716910000 725950 844770 539900 535070 833490 900020 974540 963960 636540 1116570 TRUE FALSE FALSE 675064.6538 777827.3486 748963.739 1245670.001 728945.9122 788984.6831 730699.7844 744487.3511 691715.7997 836973.6043 0.806554293 0.929333189 0.894847502 1.488302611 0.870930587 0.942663758 0.873026079 0.8894992 0.826448763 1 19.6748226 RRLS(ph)S(ph)LRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 2 RRLSSLRASTSK 12 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RRLS(1)S(1)LRAS(0.797)T(0.173)S(0.03)K;RRLS(1)S(1)LRAS(0.943)T(0.046)S(0.01)K ; 73.138 0.010621 2103400000 2854160 2464790 1217770 1041000 1747450 2030930 2530210 2164810 1322470 2982080 TRUE FALSE FALSE 2654098.123 2269471.064 1689323.157 2423500.609 1528268.527 1780374.506 1897124.696 1671930.02 1437102.764 2235347.758 1.187331194 1.015265323 0.755731698 1.084171624 0.683682671 0.796464219 0.848693314 0.747950745 0.642898967 1 21.09206786 -1.000004952 0.569829455 0.787203508 21.97736375 0.44742858 0.129669054 126.0830741 1.084672436 0.059239409 3293.546957 0.09999886 1.000004952 21.19016024 RT(ph)QERDICSSK ddPTM_HeLa_A485_30min_R1 2 RTQERDICSSK 11 2 C9JS02;F8WEK6;B5MC74;P58658-3;P58658 C9JS02 EVA1C Protein eva-1 homolog C 1 0 RT(0.999)QERDICS(0.001)SK;RT(0.999)QERDICS(0.001)SK ; 60.019 0.018474 1072450000 959060 729860 568230 514830 1006460 468920 370470 338380 250760 276560 TRUE FALSE FALSE 1172399.588 815210.7781 778441.923 542953.8593 906253.3085 493471.9261 291316.058 255391.7744 301085.2319 207618.6817 5.646888703 3.926480851 3.749382843 2.615149344 4.364989225 2.376818512 1.403130275 1.230100164 1.450183719 1 17.66357674 -4.872794496 0.294755354 0.6220447 7.496116 0.81702999 0.640336504 2.43448691 0.23042407 0.837539084 5.88569411 1.34E-05 4.872794496 6.8740713 up RRLS(ph)S(ph)LRAST(ph)SK ddPTM_HeLa_A486_30min_R1 1 RRLSSLRASTSK 12 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RRLS(0.994)S(0.984)LRAS(0.206)T(0.762)S(0.054)K 70.334 0.006889 989930000 1021700 700580 293520 443440 592250 742770 1018100 892570 422760 1271200 TRUE FALSE FALSE 950084.1061 645063.4893 407178.8047 1032350.73 517964.4825 651134.5893 763360.6116 689351.2957 459405.1772 952883.2459 0.997062452 0.67695963 0.427312377 1.083396874 0.54357602 0.683330924 0.801106132 0.723437314 0.482121161 1 19.86193993 -10.23537887 4.547827313 1.000065885 0.711589057 0.159004164 0.197884979 0.000184399 3.10E-05 0.18328908 0.044439373 5.82E-11 10.23537887 -0.288476828 RRLS(ph)SLRAS(ph)TSK ddPTM_HeLa_A485_30min_R1 2 RRLSSLRASTSK 12 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RRLS(0.864)S(0.136)LRAS(0.679)T(0.305)S(0.016)K;RRLS(0.994)S(0.006)LRAS(0.95)T(0.043)S(0.007)K ; 106.87 0.00030742 2307700000 576460 1482300 586310 303830 730660 1308410 1394870 2151000 480280 389280 TRUE FALSE FALSE 704691.5382 1655642.091 803210.4674 320427.4636 657912.9249 1376916.324 1096844.629 1623463.877 576667.7906 292239.6602 2.411348062 5.665357295 2.748464965 1.096454408 2.251278709 4.7115998 3.75323674 5.555248307 1.973270125 1 18.15679246 -6.244358469 24.65294353 3.705534516 2.890499359 0.011599301 1.622755026 2411.0077 3479818.045 0.54344528 0.542055791 5.70E-07 6.244358469 -0.815035157 RRLS(ph)SLRAS(ph)TSK ddPTM_HeLa_A486_30min_R1 1 RRLSSLRASTSK 12 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 2 0 RRLS(0.75)S(0.285)LRAS(0.929)T(0.019)S(0.017)K 48.623 0.032559 479790000 192530 124590 77290 60462 118120 99226 137590 137840 76958 221690 TRUE FALSE FALSE 179034.6412 114717.0347 107218.7579 140758.5916 103304.2882 86984.50498 103163.5267 106456.841 83628.7814 166177.381 1.077370699 0.690328816 0.64520669 0.847038211 0.621650718 0.523443711 0.620803662 0.640621728 0.503250087 1 17.3423645 -4.260655777 4.270194231 0.65954139 1.109614808 0.419150444 0.140543853 0.194735898 8.288408205 0.033921667 0.267863876 5.49E-05 4.260655777 0.450073418 RRLSES(ph)SALK ddPTM_HeLa_A486_30min_R1 1 RRLSESSALK 10 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RRLS(0.233)ES(0.491)S(0.276)ALK 75.911 0.0072515 232000000 149120 200300 151250 66298 225070 189210 201060 184650 167620 214440 TRUE FALSE FALSE 138667.4581 184427.4985 209818.0506 154345.0945 196839.6219 165867.1939 150752.6614 142609.2259 182149.4366 160742.8282 0.862666531 1.147345114 1.305302718 0.960198948 1.22456239 1.031879281 0.93785 0.887188732 1.133173023 1 17.29439485 -6.515305608 23.25125273 0.980825189 1.108475783 0.135860299 0.130509833 255.6149269 784806.6362 0.047752888 0.038693265 3.05E-07 6.515305608 0.127650594 RRLSESS(ph)ALK ddPTM_HeLa_A485_30min_R1 1 RRLSESSALK 10 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RRLS(0.323)ES(0.164)S(0.513)ALK 93.716 0.0018948 441910000 200920 169830 141720 282540 207410 157410 231650 179890 166200 335750 TRUE FALSE FALSE 245613.9608 189690.1412 194148.1255 297974.4448 186759.5321 165651.7442 182156.0851 135771.6954 199554.8155 252053.704 0.974450908 0.752578273 0.770264917 1.182186336 0.740951349 0.657208133 0.722687595 0.538661774 0.791715465 1 17.94337163 -5.970674109 24.99851088 0.710573561 0.905276437 0.222161215 0.156814857 284.8745927 242836.7736 0.047605745 0.053979181 1.07E-06 5.970674109 0.194702876 RRMGKLLR ddPTM_HeLa_A485_30min_R1 1 RRMGKLLR 8 3 A0A087WUB1;Q6ZRS4-3;Q6ZRS4;Q6ZRS4-4 A0A087WUB1 CCDC129 Coiled-coil domain-containing protein 129 0 0 75.854 0.030643 27639000 45840 56195 63408 48683 108020 66007 81604 91944 64105 69868 FALSE FALSE TRUE 56036.94985 62766.51642 86865.25783 51342.42902 97265.14952 69463.02445 64168.63876 69394.58984 76970.28549 52451.19343 1.068363677 1.196665172 1.656115946 0.978861026 1.85439345 1.324336396 1.223397116 1.323031666 1.467464903 1 15.67868798 -10.61231493 4.704799944 0.994779679 1.348079083 0.146170327 0.248941651 0.013238872 0.001090909 0.234097388 0.056117781 2.44E-11 10.61231493 0.353299404 RRMGKLLR ddPTM_HeLa_A486_30min_R1 1 RRMGKLLR 8 3 A0A087WUB1;Q6ZRS4-3;Q6ZRS4;Q6ZRS4-4 A0A087WUB1 CCDC129 Coiled-coil domain-containing protein 129 0 0 75.854 0.030643 23672000 23752 38315 35066 15885 60153 33837 43484 48233 25869 33922 FALSE FALSE TRUE 22087.10746 35278.77986 48644.4943 36981.08278 52608.04984 29662.53497 32603.84327 37251.39882 28111.34575 25427.7104 0.868623525 1.387414726 1.913050508 1.45436149 2.068925947 1.166543684 1.282217028 1.464992256 1.105539795 1 14.63411394 RRNDLDDPER ddPTM_HeLa_A485_30min_R1 1 RRNDLDDPER 10 2 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 99.215 0.0014901 47840000 4260.6 7917.4 6677.3 6067.2 7970.5 8052 4723.9 10173 4759.5 3600.8 FALSE FALSE TRUE 5208.355771 8843.271058 9147.511136 6398.635773 7176.929034 8473.590269 3714.600174 7678.055799 5714.687993 2703.186828 1.926746504 3.271424293 3.383972962 2.367071231 2.654988164 3.134666898 1.374155917 2.84037186 2.114055875 1 11.40044551 -9.000513838 0.315497487 0.571780397 2.898025539 0.432006434 0.576186848 4.98240104 0.73108465 3.331401204 0.641538528 9.99E-10 9.000513838 2.326245142 RRNDLDDPER ddPTM_HeLa_A486_30min_R1 1 RRNDLDDPER 10 2 Q15393 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 82.171 0.00512 21315000 6905.4 8723.2 7465 2035.7 10190 6953.2 5964.7 8064 6244.6 7522.2 FALSE FALSE TRUE 6421.36712 8031.941863 10355.64792 4739.212479 8911.875182 6095.384879 4472.268972 6228.003236 6785.886956 5638.592159 1.13882454 1.424458737 1.836566226 0.840495703 1.580514237 1.081011839 0.793153476 1.104531603 1.203471853 1 12.46111928 -6.422980645 7.245884127 1.020655859 1.36359471 0.281395973 0.262950264 0.356636102 22.61928968 0.092278589 0.081096338 3.78E-07 6.422980645 0.342938851 RRNDS(ph)YTEEEPEWFSAGPTSQSETIELTGFDDK ddPTM_HeLa_A485_30min_R1 1 RRNDSYTEEEPEWFSAGPTSQSETIELTGFDDK 33 2 B1AKL4;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 RRNDS(0.352)Y(0.296)T(0.352)EEEPEWFSAGPTSQSETIELTGFDDK 194.98 4.47E-22 189690000 59413 61354 40545 58567 54205 46696 65720 57964 37513 73053 TRUE FALSE FALSE 72629.21688 68528.81659 55544.28272 61766.36691 48808.15987 49140.93035 51678.38512 43748.23812 45041.51501 54842.23154 1.32433008 1.249562876 1.012801288 1.126255537 0.889973995 0.896041772 0.942310035 0.797710758 0.821292528 1 15.74299966 -4.626298264 0.617364715 0.865337585 1.518825266 0.797913417 0.075532298 0.975035555 0.382124464 0.038483621 0.425297549 2.36E-05 4.626298264 0.653487681 RRNDSYT(ph)EEEPEWFSAGPTSQSETIELTGFDDK ddPTM_HeLa_A485_30min_R1 1 RRNDSYTEEEPEWFSAGPTSQSETIELTGFDDK 33 2 B1AKL4;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 RRNDS(0.409)YT(0.591)EEEPEWFSAGPTSQSETIELTGFDDK 224.8 3.34E-39 164270000 110470 97263 76655 122210 100130 98572 136330 118250 86943 158130 TRUE FALSE FALSE 135043.6704 108637.0618 105012.8744 128886.0228 90160.70562 103733.0775 107201.9818 89249.00209 104391.6626 118711.1012 1.137582493 0.915138186 0.884608713 1.085711627 0.759496835 0.873827944 0.903049342 0.751816816 0.879375741 1 16.85709533 -1.000000017 0.728577753 0.870153116 38.89383029 0.362278958 0.094686209 361.5365269 1.703225317 0.035561043 22495.3165 0.099999996 1.000000017 38.02367717 RRNPS(ph)CGSDNDSVQPVRR ddPTM_HeLa_A485_30min_R1 1 RRNPSCGSDNDSVQPVRR 18 3 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 RRNPS(0.5)CGS(0.5)DNDSVQPVRR 95.206 0.0031551 36639000 8351.9 17667 8751.9 9406.9 10826 18800 19094 29337 14971 20494 TRUE FALSE FALSE 10209.75134 19733.00197 11989.59201 9920.775127 9748.125428 19784.33893 15014.41092 22142.05475 17975.54238 15385.22296 0.66360763 1.282594475 0.779292704 0.644824917 0.63360313 1.285931246 0.975898169 1.439176722 1.168364113 1 13.90925773 -6.269748715 24.99187241 1.188949112 0.817693368 0.429587445 0.214163126 645.1657322 1940450.405 0.076838929 0.068878761 5.37E-07 6.269748715 -0.371255744 RRNPS(ph)CGSDNDSVQPVRR ddPTM_HeLa_A486_30min_R1 2 RRNPSCGSDNDSVQPVRR 18 3 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 RRNPS(0.822)CGS(0.178)DNDSVQPVRR;RRNPS(0.596)CGS(0.404)DNDSVQPVRR ; 119.01 0.00024932 55481000 17822.6 17209.3 18404.4 7791.5 29991 18198.8 21384 18829.4 21935.1 29198 TRUE FALSE FALSE 16573.32778 15845.57239 25531.07657 18139.00576 26229.24913 15953.61709 16033.49702 14542.35666 23836.45213 21886.63075 0.757235226 0.723984087 1.166514703 0.828771041 1.198414202 0.728920649 0.732570362 0.66444017 1.089087325 1 14.41776226 RRNPSCGS(ph)DNDSVQPVRR ddPTM_HeLa_A485_30min_R1 1 RRNPSCGSDNDSVQPVRR 18 3 Q9HCS5 Q9HCS5 EPB41L4A Band 4.1-like protein 4A 1 0 RRNPS(0.45)CGS(0.55)DNDSVQPVRR 112.53 0.00052695 48268000 8899.8 15978 9692.7 7146.4 10971 17566 19507 25261 12060 17452 TRUE FALSE FALSE 10879.52981 17846.48811 13278.43308 7536.789736 9878.688718 18485.7286 15339.17009 19065.70014 14480.33138 13101.53758 0.830400992 1.362167456 1.013501888 0.575259941 0.754009875 1.410958713 1.170791596 1.455226154 1.105239083 1 13.67744851 -6.262289092 24.99895397 1.253291524 0.919830541 0.329629664 0.227415537 98.59978824 2900823.804 0.082456718 0.077002473 5.47E-07 6.262289092 -0.333460983 RRPAS(ph)GDDLSAK ddPTM_HeLa_A486_30min_R1 2 RRPASGDDLSAK 12 2 D6RB33;D6RAL8;D6RDV8;Q92564-2;Q92564;Q92564-3 D6RB33 DCUN1D4 DCN1-like protein;DCN1-like protein 4 1 0 RRPAS(0.987)GDDLS(0.013)AK;RRPAS(0.999)GDDLS(0.001)AK ; 85.636 0.0019788 373870000 447590 418920 280270 194768 459490 448880 536150 549160 347200 599990 TRUE FALSE FALSE 416216.2524 385723.2535 388798.0499 453429.747 401856.4796 393501.7495 401999.5992 424128.2561 377295.5756 449748.5987 0.925442021 0.857641924 0.864478624 1.008184902 0.893513578 0.874937133 0.893831799 0.94303408 0.838903282 1 18.77875926 -10.40765827 3.182044302 1.001274949 0.901044826 0.292849967 0.046594148 265333562.4 308162662.3 3049518.446 0.01132898 3.91E-11 10.40765827 -0.100230123 RRPEAS(ph)PVQK ddPTM_HeLa_A485_30min_R1 4 RRPEASPVQK 10 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RRPEAS(1)PVQK;RRPEAS(1)PVQK;RRPEAS(1)PVQK;RRPEAS(1)PVQK ;;; 135.14 3.43E-05 3011240000 2622310 2156450 1883430 3189220 2709800 2350810 2901020 2535670 2330890 4313120 TRUE FALSE FALSE 3205633.813 2408628.069 2580189.133 3363439.013 2440002.797 2473894.777 2281193.378 1913792.957 2798678.243 3237938.561 0.990023051 0.743877014 0.796861671 1.038759368 0.753566737 0.764033884 0.704520279 0.591052894 0.864339514 1 21.62664418 -5.903642492 22.13945793 0.754520161 0.877609335 0.135876857 0.128314775 11.43302096 2612.139499 0.038910185 0.044120043 1.25E-06 5.903642492 0.123089174 RRPEAS(ph)PVQK ddPTM_HeLa_A486_30min_R1 3 RRPEASPVQK 10 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RRPEAS(1)PVQK;RRPEAS(1)PVQK;RRPEAS(1)PVQK ;; 124.81 8.30E-05 2113770000 2229440 2230340 1412230 884900 1940680 2266280 2503300 2290630 2068280 2575290 TRUE FALSE FALSE 2073167.769 2053599.736 1959083.277 2060091.92 1697261.818 1986689.415 1876947.863 1769103.553 2247560.176 1930420.622 1.073946137 1.063809469 1.014847881 1.067172562 0.879218653 1.029148463 0.972299944 0.916434239 1.164285208 1 20.8804838 -5.094489474 1.573742821 0.992933338 1.069346087 0.103895039 0.074035907 0.864703032 4.076511595 0.022486082 0.061829208 8.04E-06 5.094489474 0.076412749 RRPEAS(ph)PVQKK ddPTM_HeLa_A485_30min_R1 2 RRPEASPVQKK 11 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RRPEAS(1)PVQKK;RRPEAS(1)PVQKK ; 120.53 0.00093764 4257500000 4384200 4293000 2305640 4139600 4157700 5531700 7156900 9183900 3874900 6077400 TRUE FALSE FALSE 5359450.165 4795029.006 3158592.182 4365735.866 3743744.789 5821331.258 5627769.849 6931534.125 4652556.887 4562416.026 1.174695629 1.050984605 0.692306919 0.956891226 0.820561906 1.275931705 1.233506505 1.519268319 1.019757265 1 22.12136657 -6.270654018 24.71038042 1.243635406 0.932583533 0.349159916 0.181688868 576.5797248 1546176.508 0.063311432 0.056611384 5.36E-07 6.270654018 -0.311051873 RRPEAS(ph)PVQKK ddPTM_HeLa_A486_30min_R1 2 RRPEASPVQKK 11 3 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RRPEAS(1)PVQKK;RRPEAS(1)PVQKK ; 138.77 6.46E-05 2251300000 3915300 2440100 1639920 1568340 2641100 3511400 4088500 3520700 2401600 4710800 TRUE FALSE FALSE 3640857.689 2246737.589 2274940.943 3651174.78 2309828.611 3078199.169 3065514.056 2719113.466 2609772.622 3531185.018 1.031058319 0.636255981 0.644242919 1.033980027 0.654122794 0.871718461 0.868126151 0.770028603 0.739064254 1 21.75172098 -10.86801036 2.474266736 1.0938964 0.800713748 0.148160186 0.1395774 27959939.14 16076923.69 15421330.71 0.035714124 1.36E-11 10.86801036 -0.293182652 RRPES(ph)APAESSPSK ddPTM_HeLa_A485_30min_R1 1 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 RRPES(0.436)APAES(0.282)S(0.282)PSK 105.77 0.00025518 84302000 58045 55519 39549 72757 69189 64916 89936 78780 49060 101020 TRUE FALSE FALSE 70956.91 62011.4641 54179.82087 76731.53068 62300.30022 68314.90138 70720.43889 59459.08148 58905.892 75837.57314 0.935643205 0.817687876 0.714419234 1.011787792 0.821496491 0.900805479 0.932525079 0.784031965 0.776737566 1 16.21062518 -10.17510389 4.854658686 1.000014353 0.854945823 0.206643335 0.085225091 1.32E-05 2.24E-06 0.082078637 0.019905024 6.68E-11 10.17510389 -0.14506853 RRPESAPAES(ph)SPSK ddPTM_HeLa_A485_30min_R1 1 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 RRPES(0.317)APAES(0.432)S(0.25)PSK 123.63 2.26E-05 69086000 56742 56620 43926 73305 61510 64539 74943 70694 49343 93512 TRUE FALSE FALSE 69364.06214 63241.21647 60176.05531 77309.46653 55385.84843 67918.16224 58930.81582 53356.18566 59245.6875 70201.17936 0.988075454 0.900856895 0.857194364 1.101255951 0.788958945 0.967478935 0.839456208 0.760046856 0.843941484 1 16.09920765 -6.448754594 1.458866712 0.846013695 0.938776603 0.086508135 0.097070155 0.818904816 3.516448825 0.046837719 0.036428152 3.56E-07 6.448754594 0.092762908 RRPESAPAESS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 RRPESAPAES(0.031)S(0.969)PSK;RRPESAPAES(0.001)S(0.999)PS(0.001)K ; 132.64 7.07E-06 477450000 310230 312500 242210 406500 379320 312430 455460 423920 259620 557820 TRUE FALSE FALSE 379239.5932 349044.1566 331813.5582 428706.0657 341553.5689 328788.3517 358147.2502 319952.9553 311723.3526 418765.7399 0.90561275 0.833506955 0.792360804 1.023737199 0.815619656 0.785136701 0.855244869 0.76403804 0.744385997 1 18.67578389 -5.927078785 25 0.814784022 0.883179819 0.095643249 0.086791227 90.1883703 30917.39938 0.026175589 0.029680331 1.18E-06 5.927078785 0.068395796 RRPESAPAESS(ph)PSK ddPTM_HeLa_A486_30min_R1 4 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 RRPESAPAES(0.116)S(0.884)PSK;RRPES(0.007)APAES(0.079)S(0.892)PS(0.021)K;RRPESAPAES(0.391)S(0.607)PS(0.002)K;RRPES(0.031)APAES(0.222)S(0.743)PS(0.004)K ;;; 166.38 4.02E-12 579366000 525735 456457 260120 213700 404893 478413 577900 551402 350304 670302 TRUE FALSE FALSE 488883.6914 420285.6849 360845.4303 497504.3998 354107.5445 419391.2682 433303.3076 425859.8016 380668.6328 502454.0163 0.972991907 0.836465968 0.718166078 0.990149116 0.704756123 0.834685871 0.862374055 0.847559752 0.757618848 1 18.93863204 -9.826117684 5.475312384 1.000000062 0.834366474 0.230495378 0.089799673 6.43E-08 1.38E-08 0.082471752 0.02000233 1.49E-10 9.826117684 -0.165633588 RRPGAQPLPPPPPSQS(ph)PEPTEPHPR ddPTM_HeLa_A485_30min_R1 4 RRPGAQPLPPPPPSQSPEPTEPHPR 25 2 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;Q9UIS9-10;Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 K7EPZ6;Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 0 RRPGAQPLPPPPPSQS(1)PEPTEPHPR;RRPGAQPLPPPPPS(0.168)QS(0.832)PEPTEPHPR;RRPGAQPLPPPPPSQS(1)PEPTEPHPR;RRPGAQPLPPPPPSQS(1)PEPTEPHPR ;;; 203.25 8.72E-29 1898200000 465858 644630 587751 540062 792470 646960 839160 1136510 591348 895800 TRUE FALSE FALSE 569486.5049 720013.871 805184.5533 569564.2196 713568.9043 680833.8252 659866.6107 857779.1405 710026.1194 672493.546 0.846828209 1.070662871 1.197311942 0.846943771 1.061079186 1.012402021 0.981223708 1.275520257 1.055811054 1 19.3591609 RRPGAQPLPPPPPSQS(ph)PEPTEPHPR ddPTM_HeLa_A486_30min_R1 4 RRPGAQPLPPPPPSQSPEPTEPHPR 25 2 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;Q9UIS9-10;Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 K7EPZ6;Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 0 RRPGAQPLPPPPPS(0.014)QS(0.986)PEPTEPHPR;RRPGAQPLPPPPPS(0.008)QS(0.992)PEPTEPHPR;RRPGAQPLPPPPPS(0.002)QS(0.998)PEPTEPHPR;RRPGAQPLPPPPPS(0.001)QS(0.999)PEPTEPHPR ;;; 172.83 1.46E-14 1686980000 429866 474417 467694 163482 534178 438295 494705 486008 397890 522030 TRUE FALSE FALSE 399734.6132 436822.4691 648797.6421 380594.3579 467176.4142 384222.6192 370924.5765 375354.5879 432379.4256 391310.2902 1.021528499 1.116307136 1.65801324 0.972615256 1.193877151 0.981887338 0.947903967 0.959224936 1.104952863 1 18.57795352 -5.881621155 1.715593592 0.997411973 1.234909668 0.221469143 0.178568922 0.531528291 3.219352344 0.067057759 0.08117855 1.31E-06 5.881621155 0.237497695 RRPIMSNHTATHILNFALR ddPTM_HeLa_A485_30min_R1 1 RRPIMSNHTATHILNFALR 19 2 P49588-2;P49588;H3BPK7 P49588-2 AARS "Alanine--tRNA ligase, cytoplasmic" 0 0 106.16 4.43E-05 8567300 3612.6 3185 3331.1 2846.4 2923.3 2613.8 3400.7 5491.8 1590.9 3999.3 FALSE FALSE TRUE 4416.210407 3557.458044 4563.412509 3001.891625 2632.245988 2750.654526 2674.112664 4144.927439 1910.179037 3002.348112 1.470918842 1.184891929 1.519947834 0.999847957 0.87672911 0.916167754 0.890673754 1.380561909 0.636228367 1 11.55187555 -5.328172883 7.053546857 0.963624221 1.370471606 0.519875695 0.191134732 0.207403938 18.90118768 0.051641064 0.077071718 4.70E-06 5.328172883 0.406847385 RRPPGPPLQVTSDLS(ph)L ddPTM_HeLa_A485_30min_R1 4 RRPPGPPLQVTSDLSL 16 2 O95466-2;K7EK60 O95466-2 FMNL1 Formin-like protein 1 1 0 RRPPGPPLQVTSDLS(1)L;RRPPGPPLQVTSDLS(1)L;RRPPGPPLQVTSDLS(1)L;RRPPGPPLQVTSDLS(1)L ;;; 157.98 7.28E-09 1899530000 656730 885540 807130 673470 874170 884440 1056870 1179180 722855 1000090 TRUE FALSE FALSE 802817.3228 989096.1998 1105720.974 710259.9608 787134.5654 930747.9108 831061.0907 889984.2561 867925.3681 750785.9683 1.069302513 1.317414339 1.472751252 0.94602189 1.04841406 1.239698063 1.106921447 1.185403422 1.156022362 1 19.51804216 -13.99999907 0.065904772 0.41366211 1.401908376 0.125821757 0.139981086 754.969863 3.597040897 69.57849809 9.743405081 1.00E-14 13.99999907 0.988246266 RRPPGPPLQVTSDLS(ph)L ddPTM_HeLa_A486_30min_R1 4 RRPPGPPLQVTSDLSL 16 2 O95466-2;K7EK60 O95466-2 FMNL1 Formin-like protein 1 1 0 RRPPGPPLQVTSDLS(1)L;RRPPGPPLQVTSDLS(1)L;RRPPGPPLQVTSDLS(1)L;RRPPGPPLQVTSDLS(1)L ;;; 197.38 3.32E-25 1671210000 728824 672248 546237 250775 745117 625895 655733 696363 650971 880104 TRUE FALSE FALSE 677737.2013 618976.6202 757754.5951 583816.8735 651657.4779 548678.4385 491661.6678 537816.3464 707397.6904 659720.2299 1.027310018 0.938241079 1.148599908 0.884946144 0.987778529 0.831683513 0.745257831 0.815218819 1.072269211 1 19.33149482 -5.304064729 24.52800072 0.891308325 1.028069465 0.247924872 0.103528011 508.8300082 292796.1333 0.029880472 0.044320431 4.97E-06 5.304064729 0.136761141 RRPPS(ph)PEPSTK ddPTM_HeLa_A485_30min_R1 5 RRPPSPEPSTK 11 2 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RRPPS(1)PEPSTK;RRPPS(1)PEPSTK;RRPPS(0.571)PEPS(0.336)T(0.093)K;RRPPS(1)PEPSTK;RRPPS(0.957)PEPS(0.04)T(0.003)K ;;;; 97.273 0.001258 2662880000 910175 1065700 825347 996660 1163400 1144480 1478960 1651620 949328 1371770 TRUE FALSE FALSE 1112640.289 1190324.345 1130677.201 1051105.012 1047567.811 1204403.203 1162968.114 1246557.605 1139849.422 1029812.985 1.080429462 1.155864572 1.097944207 1.020675625 1.017240826 1.169535849 1.129300302 1.210469885 1.106850893 1 19.97395094 -6.278658961 24.97522011 1.136765059 1.07727491 0.112100677 0.062914758 1506.660017 2185245.532 0.022374885 0.019778603 5.26E-07 6.278658961 -0.059490149 RRPPS(ph)PEPSTK ddPTM_HeLa_A486_30min_R1 5 RRPPSPEPSTK 11 2 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RRPPS(1)PEPSTK;RRPPS(0.975)PEPS(0.013)T(0.013)K;RRPPS(0.999)PEPSTK;RRPPS(1)PEPSTK;RRPPS(0.974)PEPS(0.013)T(0.013)K ;;;; 110.98 0.00023467 4215180000 613558 563558 370092 256942 584634 583513 693353 684812 467043 752516 TRUE FALSE FALSE 570550.7526 518899.6116 513401.5338 598173.9611 511303.7522 511525.0988 519868.7459 528895.2569 507526.6633 564081.0955 1.011469374 0.919902503 0.910155539 1.060439653 0.906436603 0.906829005 0.921620579 0.93762273 0.8997406 1 19.10554306 RRPS(ph)ALEADSPMAPK ddPTM_HeLa_A485_30min_R1 1 RRPSALEADSPMAPK 15 2 Q86Y91;A0A494BYR6;Q86Y91-6 Q86Y91 KIF18B Kinesin-like protein KIF18B 1 0 RRPS(0.993)ALEADS(0.007)PMAPK 90.453 0.0016464 0 88672 86631 73666 102110 103610 102840 117880 111430 71448 110350 TRUE FALSE FALSE 108396.7805 96761.74186 100918.1189 107688.0107 93294.2246 108224.5434 92693.97501 84101.61778 85786.95824 82841.77584 1.308479682 1.168030754 1.21820323 1.299923977 1.126173644 1.306400572 1.118927909 1.015207809 1.035551898 1 16.33807086 -7.010292789 3.830345211 1.022582995 1.231501753 0.749810865 0.05733495 0.109730591 3.563838448 0.026087737 0.015525146 9.77E-08 7.010292789 0.208918758 RRPS(ph)LLSEFHPGSDRPQER ddPTM_HeLa_A485_30min_R1 2 RRPSLLSEFHPGSDRPQER 19 3 O75376-2;O75376;E7EVU5;E7EW50;J3KS51;C9JAP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 RRPS(0.956)LLS(0.044)EFHPGSDRPQER;RRPS(0.788)LLS(0.212)EFHPGSDRPQER ; 100.39 0.00022203 540730000 250106 456590 462360 155584 452410 299860 319160 364550 288030 245800 TRUE FALSE FALSE 305741.2168 509984.2287 633406.2044 164083.16 407366.4719 315560.2059 250968.8587 275143.5409 345834.979 184526.5836 1.656895234 2.763743948 3.432601374 0.889211499 2.207630272 1.71010702 1.360068852 1.491078063 1.874174291 1 17.49346915 -5.265745083 24.99274959 1.556903938 2.632346555 0.466277334 0.543671589 324.5341177 1883782.57 0.150188203 0.231860927 5.42E-06 5.265745083 1.075442617 RRPS(ph)LLSEFHPGSDRPQER ddPTM_HeLa_A486_30min_R1 1 RRPSLLSEFHPGSDRPQER 19 3 O75376-2;O75376;E7EVU5;E7EW50;J3KS51;C9JAP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 RRPS(0.921)LLS(0.079)EFHPGSDRPQER 92.147 0.00052158 151760000 93951 66550 82878 6555.7 96389 65756 75625 83478 75912 56395 TRUE FALSE FALSE 87365.52006 61276.33563 114970.5811 15262.00091 84298.99283 57643.69328 56702.82512 64471.88171 82492.11328 42273.32493 2.066682008 1.449527231 2.719695726 0.361031476 1.994141529 1.363594971 1.341338189 1.525119725 1.951398747 1 15.36745997 -5.238993916 24.99500273 1.409752651 2.015723996 0.276893564 0.523591207 1205.732839 1342688.419 0.134795206 0.23324529 5.77E-06 5.238993916 0.605971345 RRPS(ph)LLSEFQPGNER ddPTM_HeLa_A485_30min_R1 2 RRPSLLSEFQPGNER 15 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9JQE8;C9J330 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 RRPS(0.988)LLS(0.012)EFQPGNER;RRPS(0.819)LLS(0.181)EFQPGNER ; 79.88 0.0047872 233940000 100766 131149 120218 105997 169271 120199 173297 193163 93617 153815 TRUE FALSE FALSE 123181.0491 146485.7347 164691.6409 111787.3477 152417.7849 126492.4338 136270.6802 145789.4714 112405.0732 115471.7513 1.066763496 1.268585027 1.426250482 0.968092598 1.319957334 1.095440507 1.180121361 1.262555299 0.973442179 1 16.81718043 -7.769461979 24.99803796 0.986720922 1.200724856 0.312920624 0.125471748 227.5279552 708937.9738 0.10898831 0.030139677 1.70E-08 7.769461979 0.214003934 RRPS(ph)PQPS(ph)PR ddPTM_HeLa_A485_30min_R1 7 RRPSPQPSPR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR ;;;;;; 108.71 0.0029688 38193340000 2798746 4555753 4300000 2966768 4597920 4181230 4462213 5144530 3861408 3734708 TRUE FALSE FALSE 3421317.392 5088508.684 5890748.938 3128835.024 4140134.941 4400152.737 3508824.74 3882825.951 4636357.167 2803714.028 1.220280442 1.814917154 2.10105199 1.115960826 1.476660922 1.569401406 1.251491666 1.384886587 1.653648382 1 21.41890777 -12.25551549 0.149440554 4.96E-14 1.701107754 0.221889056 0.28216256 112.6139146 1.636121459 37.65135977 1.634720208 5.55E-13 12.25551549 1.701107754 RRPS(ph)PQPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 RRPSPQPSPR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR;RRPS(1)PQPS(1)PR ;; 93.823 0.0097441 12755870000 971606 1001770 944287 328294 1131873 860260 989917 1101113 836648 1023264 TRUE FALSE FALSE 903501.4368 922386.0968 1309940.215 764285.0231 989902.934 754129.8677 742229.2963 850413.607 909169.3223 767032.0341 1.177918779 1.202539211 1.707803791 0.996418649 1.290562702 0.983179104 0.967664013 1.108706767 1.185308151 1 19.54892731 RRPS(ph)PQPSPR ddPTM_HeLa_A485_30min_R1 5 RRPSPQPSPR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RRPS(1)PQPSPR;RRPS(0.999)PQPS(0.001)PR;RRPS(1)PQPSPR;RRPS(0.995)PQPS(0.005)PR;RRPS(0.998)PQPS(0.002)PR ;;;; 94.09 0.0018537 2403187000 158530.2 204274 230445 182142 238319 186837 239785 258609 217456 138341.5 TRUE FALSE FALSE 193794.6961 228162.0674 315696.1951 192091.9563 214591.1236 196619.4964 188552.9759 195184.7373 261097.4246 103855.51 1.866003027 2.196918269 3.039763562 1.84960775 2.06624688 1.893202357 1.81553175 1.879387403 2.514044989 1 16.66421823 RRPS(ph)PQPSPR ddPTM_HeLa_A486_30min_R1 3 RRPSPQPSPR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RRPS(0.999)PQPS(0.001)PR;RRPS(1)PQPSPR;RRPS(0.996)PQPS(0.004)PR ;; 73.881 0.0081651 522490000 48369 63478 66891 39356.9 71041 61912 71527 69710 58361 51826.2 TRUE FALSE FALSE 44978.58288 58447.7721 92792.9866 91624.85219 62130.37535 54273.92692 53630.18806 53838.55476 63419.77847 38848.58219 1.157792134 1.504502064 2.388581034 2.358512126 1.599295826 1.397063261 1.380492802 1.385856361 1.632486307 1 15.24557433 -5.994211727 24.65127232 1.397244636 1.879940861 0.280087982 0.369289947 190.8531355 812800.6361 0.124453849 0.140697592 1.01E-06 5.994211727 0.482696225 RRPS(ph)PQPSPRDQQSSSSER ddPTM_HeLa_A485_30min_R1 1 RRPSPQPSPRDQQSSSSER 19 3 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RRPS(0.999)PQPS(0.001)PRDQQSSSSER 76.21 0.021541 23801000 3454 3862.7 3966.3 2505.3 4911.3 7149.5 3213.7 6429.7 5781.5 2217.4 TRUE FALSE FALSE 4222.330384 4314.409164 5433.599422 2642.158195 4422.313727 7523.836765 2527.066741 4852.805994 6941.794019 1664.642988 2.53647804 2.591792471 3.264122974 1.587222133 2.656613916 4.51979002 1.518083312 2.915223281 4.170139825 1 10.70099708 -6.01079336 24.95204799 2.943301041 2.502412391 0.01504047 1.059520139 2128.771276 4921292.663 0.32972008 0.350545434 9.75E-07 6.01079336 -0.44088865 RRPS(ph)PQPSPRDQQSSSSER ddPTM_HeLa_A486_30min_R1 1 RRPSPQPSPRDQQSSSSER 19 3 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RRPS(1)PQPSPRDQQSSSSER 87.102 0.0042162 24300000 1901.5 1575 3089.4 661.53 3467.4 999.09 1373 1758.6 1288.3 1375.7 TRUE FALSE FALSE 1768.214669 1450.191264 4285.698417 1540.075272 3032.48636 875.8324338 1029.460878 1358.20517 1399.970881 1031.215766 1.714689329 1.406292759 4.155966733 1.493455902 2.940690456 0.849320252 0.998298234 1.317091161 1.357592589 1 10.01013051 -6.271031759 24.86752656 1.117643464 2.343833392 0.396208935 0.763901065 685.5713274 1777287.201 0.265089693 0.236767339 5.36E-07 6.271031759 1.226189928 RRPSLLS(ph)EFHPGSDRPQER ddPTM_HeLa_A486_30min_R1 1 RRPSLLSEFHPGSDRPQER 19 3 O75376-2;O75376;E7EVU5;E7EW50;J3KS51;C9JAP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 RRPS(0.436)LLS(0.564)EFHPGSDRPQER 67.413 0.0061902 164230000 75794 57611 66407 6904.5 87915 62473 65156 58699 57951 51238 TRUE FALSE FALSE 70481.232 53045.69454 92121.56884 16074.02493 76887.88093 54765.71644 48853.27965 45334.51909 62974.23934 38407.6713 1.83508215 1.381122384 2.398520028 0.418510792 2.001888642 1.425905674 1.271966719 1.180350632 1.639626596 1 15.22910687 -1.000000002 0.098029251 0.827754805 3.493269192 0.127143934 0.491218577 291.4082683 2.034791642 6.473725039 104.4334802 0.099999999 1.000000002 2.665514387 RRPVS(ph)AIFTESIQPQKPGPGAAATVGK ddPTM_HeLa_A485_30min_R1 1 RRPVSAIFTESIQPQKPGPGAAATVGK 27 3 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RRPVS(0.975)AIFT(0.018)ES(0.006)IQPQKPGPGAAATVGK 106.37 0.0029106 169110000 71615 63633 41542 71900 76625 76628 94215 101150 63790 88569 TRUE FALSE FALSE 87545.50968 71074.32582 56910.11451 75827.71494 68995.94595 80640.12359 74085.19558 76342.8039 76592.06788 66490.37829 1.316664334 1.068941517 0.855915036 1.140431396 1.037683161 1.212808916 1.114224306 1.148178216 1.151927089 1 16.02085797 -6.230406892 24.86363704 1.133988683 1.073566355 0.024177889 0.117187037 2150.922198 1723346.501 0.039070863 0.039068274 5.88E-07 6.230406892 -0.060422328 RRPVS(ph)VSPSSSQEISENQYAVICSEK ddPTM_HeLa_A485_30min_R1 1 RRPVSVSPSSSQEISENQYAVICSEK 26 2 Q5T5C0-2;Q5T5C0;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 RRPVS(0.479)VS(0.387)PS(0.044)S(0.044)S(0.044)QEIS(0.001)ENQYAVICSEK 72.37 0.00025234 0 21508 18959 16122 12391 20167 14798 26636 37176 12990 25075 TRUE FALSE FALSE 26292.3804 21176.09013 22086.19869 13067.88895 18159.10267 15572.8004 20945.001 28058.52771 15596.97385 18824.26397 1.396728203 1.124935889 1.17328352 0.69420451 0.964664685 0.827272738 1.112659758 1.490551118 0.828556903 1 14.20030584 -4.314587784 1.661373969 1.010635483 1.497321855 0.247016184 0.207677937 1.388793429 4.074579318 0.060971885 1.049557927 4.85E-05 4.314587784 0.486686372 RRRGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_A486_30min_R1 1 RRRGDSESEEDEQDSEEVR 19 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRRGDS(1)ES(1)EEDEQDSEEVR 219.23 7.10E-35 879800000 80082 86245 80668 39732 119420 64840 101900 106750 58157 95603 TRUE FALSE FALSE 74468.66534 79410.6321 111904.81 92498.10394 104441.2301 56840.70004 76403.54221 82445.35534 63198.09559 71663.38653 1.039145217 1.108106049 1.561533935 1.290730294 1.457386193 0.79316235 1.066144735 1.150452963 0.881874255 1 16.1289486 -6.256959964 24.99801116 0.993218788 1.29617085 0.465093929 0.167444054 389.4891017 2173601.432 0.058696754 0.056812411 5.53E-07 6.256959964 0.302952062 RRRGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_A485_30min_R1 2 RRRGDSESEEDEQDSEEVR 19 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRRGDS(0.814)ES(0.194)EEDEQDS(0.992)EEVR;RRRGDS(0.992)ES(0.026)EEDEQDS(0.982)EEVR ; 98.84 0.00027793 2858400000 253483 491760 356850 228758 562300 498170 645100 951520 358760 326990 TRUE FALSE FALSE 309869.4188 549267.0543 488863.6648 241254.4703 506315.4376 524253.4109 507269.115 718158.2281 430759.8413 245477.4108 1.262313375 2.237546227 1.991481266 0.98279703 2.062574458 2.135648283 2.066459449 2.925557287 1.754784034 1 17.90523075 -5.960056906 24.99866526 2.102089905 1.668550621 0.075083993 0.554891398 333.3804016 208647.0279 0.16786729 0.190343346 1.10E-06 5.960056906 -0.433539283 RRRGDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_A486_30min_R1 1 RRRGDSESEEDEQDSEEVR 19 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RRRGDS(0.993)ES(0.007)EEDEQDS(0.999)EEVR 164.26 2.10E-12 871200000 182430 164900 174270 87494 312020 199050 234880 277800 144630 250790 TRUE FALSE FALSE 169642.5991 151832.7234 241752.0111 203690.4537 272883.5421 174493.2348 176110.5397 214551.0043 157166.6449 187990.5516 0.902399603 0.80766146 1.285979583 1.083514315 1.451581155 0.928202153 0.936805271 1.141286104 0.836034809 1 17.52030063 -7.758946902 24.9969032 0.918017405 1.070201096 0.093181007 0.185937171 159.5575185 1600326.472 0.145172109 0.049046076 1.74E-08 7.758946902 0.152183691 RRRT(ph)PT(ph)PPPR ddPTM_HeLa_A486_30min_R1 2 RRRTPTPPPR 10 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRRT(1)PT(1)PPPR;RRRT(1)PT(1)PPPR ; 42.789 0.027159 56320000 8762.2 15118.6 21012 4844.2 26961 18826 20150.1 30987 18939 11286 TRUE FALSE FALSE 8148.015028 13920.54708 29148.40912 11277.54241 23579.29998 16503.43953 15108.33185 23931.93654 20580.64777 8459.91214 0.963132346 1.645471826 3.445474213 1.333056683 2.787180243 1.950781433 1.785873376 2.828863485 2.432725946 1 13.04642697 -4.525742936 24.99760481 2.248952265 1.133716775 0.231358389 0.694450671 91.826041 801433.0215 0.164366429 0.440284332 2.98E-05 4.525742936 -1.11523549 RRS(ph)AEDELAMR ddPTM_HeLa_A485_30min_R1 2 RRSAEDELAMR 11 2 A3KFL1;A3KFL5;A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL1 EXOSC2 Exosome complex component RRP4 1 0 RRS(1)AEDELAMR;RRS(1)AEDELAMR ; 114.5 0.00027716 1705440000 407280 603100 627150 397290 763490 608110 702780 876970 596280 566910 TRUE FALSE FALSE 497878.0309 673627.2987 859158.8829 418992.9467 687474.2548 639949.6993 552625.3118 661891.7325 715947.9266 425589.7702 1.169854319 1.582808953 2.018748906 0.984499572 1.615344877 1.503677353 1.29849294 1.555234122 1.682248909 1 18.69910395 -10.30344629 4.410174929 0.999613629 1.493868723 0.225952572 0.272053121 0.001089535 0.000172082 0.256395015 0.062133425 4.97E-11 10.30344629 0.494255094 RRS(ph)AEDELAMR ddPTM_HeLa_A486_30min_R1 2 RRSAEDELAMR 11 2 A3KFL1;A3KFL5;A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL1 EXOSC2 Exosome complex component RRP4 1 0 RRS(1)AEDELAMR;RRS(1)AEDELAMR ; 127.03 3.92E-05 1485020000 516740 628080 701650 243400 958420 603000 801940 791290 558580 615880 TRUE FALSE FALSE 480519.1944 578308.6534 973347.6708 566647.5008 838206.0267 528607.9909 601286.1299 611130.5407 606998.1641 461659.6393 1.040851644 1.252673191 2.108366398 1.227413992 1.815636359 1.145016687 1.302444656 1.323768614 1.314817481 1 18.81647008 -6.308956717 24.99430438 1.2427722 1.495738454 0.167648394 0.299909131 830.5330698 436861.2538 0.105793774 0.093301497 4.91E-07 6.308956717 0.252966255 RRS(ph)DEFRPQNYHQQDFR ddPTM_HeLa_A486_30min_R1 1 RRSDEFRPQNYHQQDFR 17 3 O14647 O14647 CHD2 Chromodomain-helicase-DNA-binding protein 2 1 0 RRS(1)DEFRPQNYHQQDFR 147.35 6.13E-08 208450000 75345 54583 61457 20524 85853 55882 71162 52263 40721 64880 TRUE FALSE FALSE 70063.70458 50257.64429 85254.79628 47780.90923 75084.51619 48987.84701 53356.51493 40363.85579 44250.72907 48633.6257 1.44064325 1.033392916 1.753001037 0.982466525 1.543880702 1.007283465 1.0971116 0.829957775 0.909879295 1 15.56966653 -6.391503816 6.261355951 0.959794595 1.334193038 0.428901938 0.220285043 0.23530923 10.98977484 0.073677879 0.06468575 4.06E-07 6.391503816 0.374398444 RRS(ph)EVVESTTESQDKENSHQK ddPTM_HeLa_A485_30min_R1 1 RRSEVVESTTESQDKENSHQK 21 3 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 RRS(1)EVVESTTESQDKENSHQK 159.98 2.04E-13 380740000 85135 62084 47949 99353 71714 58764 81659 73360 49987 113560 TRUE FALSE FALSE 104072.987 69344.18374 65687.33042 104780.4028 64573.90236 61840.79217 64211.88756 55368.34498 60018.93239 85251.58192 1.220774849 0.813406416 0.770511572 1.229072827 0.757451075 0.725391726 0.753204646 0.649470001 0.704021334 1 16.37943898 -5.952016754 24.99938543 0.743431833 0.979484126 0.336948909 0.163828342 137.2641031 71514.2372 0.049746959 0.056407737 1.12E-06 5.952016754 0.236052294 RRS(ph)EVVESTTESQDKENSHQK ddPTM_HeLa_A486_30min_R1 3 RRSEVVESTTESQDKENSHQK 21 3 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 RRS(0.994)EVVES(0.003)T(0.003)T(0.001)ESQDKENSHQK;RRS(1)EVVESTTESQDKENSHQK;RRS(0.998)EVVES(0.001)TTESQDKENSHQK ;; 226.07 8.74E-36 687570000 407910 339810 153616 148181 317780 411360 470120 430590 298466 476130 TRUE FALSE FALSE 379317.6154 312882.218 213100.2292 344972.8567 277921.0692 360610.5856 352491.0036 332554.0567 324337.2732 356903.9489 1.062800276 0.876656644 0.597080054 0.966570579 0.7786999 1.01038553 0.987635482 0.931774663 0.908752268 1 18.44517634 -6.269035734 24.95625479 0.964690874 0.849207201 0.183297488 0.116945636 1031.901409 3390089.506 0.041525871 0.037305775 5.38E-07 6.269035734 -0.115483673 RRS(ph)FLESNYFTKPNLK ddPTM_HeLa_A485_30min_R1 1 RRSFLESNYFTKPNLK 16 3 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 RRS(0.993)FLES(0.007)NYFTKPNLK 144.92 4.60E-07 488250000 209590 236160 161990 216600 260160 217010 292890 352020 182530 286280 TRUE FALSE FALSE 256212.5724 263776.8577 221916.842 228432.3095 234257.5569 228372.308 230311.6588 265686.5431 219162.0967 214915.6646 1.192154015 1.227350543 1.032576394 1.062892786 1.089997592 1.0626136 1.071637376 1.236236286 1.019758598 1 17.71341111 -4.753168405 24.97486756 1.080375554 1.209752335 0.438832103 0.061742579 169.8974599 513007.1887 0.015598751 0.039820361 1.77E-05 4.753168405 0.129376781 RRS(ph)FLESNYFTKPNLK ddPTM_HeLa_A486_30min_R1 2 RRSFLESNYFTKPNLK 16 3 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 RRS(0.998)FLES(0.002)NYFTKPNLK;RRS(1)FLESNYFTKPNLK ; 167.51 2.85E-11 558770000 502800 367660 284090 209111 455250 397990 526870 516430 342080 558370 TRUE FALSE FALSE 467556.3165 338525.2826 394097.2562 486820.9759 398148.3 348890.0403 395041.5533 398850.1626 371731.7698 418550.5176 1.11708455 0.80880388 0.94157632 1.163111633 0.951255065 0.833567337 0.943832433 0.952931954 0.888140748 1 18.67504224 -5.993973324 24.99937576 0.918722441 0.997279737 0.135334082 0.098525583 358.9390978 1488908.065 0.031192371 0.035271007 1.01E-06 5.993973324 0.078557295 RRS(ph)FNDFR ddPTM_HeLa_A485_30min_R1 1 RRSFNDFR 8 2 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 RRS(1)FNDFR 79.201 0.0069224 394720000 103660 219720 179410 102260 218340 218750 223180 334970 167260 160920 TRUE FALSE FALSE 126718.8094 245414.3427 245781.2249 107846.2049 196601.303 230203.4117 175495.7698 252818.0823 200827.5478 120805.6055 1.048948092 2.031481417 2.03451838 0.892725171 1.627418712 1.905568957 1.452712141 2.092767808 1.662402559 1 16.88232787 -5.993796654 24.99518472 1.689934629 1.538072809 0.004034369 0.43444699 813.6197748 3278289.641 0.134196007 0.151774175 1.01E-06 5.993796654 -0.15186182 RRS(ph)FNDFR ddPTM_HeLa_A486_30min_R1 1 RRSFNDFR 8 2 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 RRS(1)FNDFR 52.247 0.035663 139260000 141160 149040 179340 70867 276010 133260 170320 191630 149980 161490 TRUE FALSE FALSE 131265.413 137229.5276 248785.2509 164981.9574 241390.2521 116819.7361 127704.1345 148000.0323 162980.3872 121051.8529 1.08437343 1.13364252 2.055195728 1.362903198 1.994106215 0.96503881 1.054953985 1.222616827 1.346368381 1 16.88526564 -6.29715902 24.99960832 1.127781537 1.524578346 0.298147726 0.312994039 841.0471341 588632.9391 0.113094774 0.099743636 5.04E-07 6.29715902 0.396796809 RRS(ph)FS(ph)IS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 RRSFSISPVR 10 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 3 0 RRS(1)FS(1)IS(1)PVR;RRS(1)FS(1)IS(1)PVR;RRS(1)FS(1)IS(1)PVR ;; 70.47 0.010945 1737080000 1518600 1501990 1314520 621130 1817240 1523390 1551510 1680890 1399370 1727700 TRUE FALSE FALSE 1412153.982 1382966.842 1823537.348 1446022.03 1589304.814 1335449.63 1163305.788 1298188.041 1520668.518 1295072.675 1.090405203 1.067868135 1.408057929 1.116556668 1.227193535 1.031177367 0.898255218 1.002405553 1.174195509 1 20.30460163 -6.316518297 6.629611004 1.012624452 1.184486519 0.351762891 0.108891713 0.274795355 26.95893648 0.039431683 0.034878141 4.82E-07 6.316518297 0.171862067 RRS(ph)FSIS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 RRSFSISPVR 10 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 RRS(0.878)FS(0.132)IS(0.99)PVR 56.648 0.01431 0 80656 82556 73700 85884 106860 75298 113030 101020 56574 198290 TRUE FALSE FALSE 75002.43091 76013.9619 102238.6138 199942.2923 93456.62237 66008.49833 84748.69849 78019.95125 61477.87987 148636.8933 0.504601712 0.511407095 0.687841433 1.345172708 0.62875791 0.44409229 0.570172698 0.524903 0.413611173 1 17.18143273 -5.988231499 24.99985027 0.557014528 0.770015411 0.079513173 0.26563839 514.6690623 1093305.642 0.085566687 0.09695202 1.03E-06 5.988231499 0.213000882 RRS(ph)GASEANLIVAK ddPTM_HeLa_A485_30min_R1 1 RRSGASEANLIVAK 14 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 RRS(0.577)GAS(0.423)EANLIVAK 75.463 0.0052859 192480000 149710 194090 184680 151340 249770 186630 234220 290520 173820 216980 TRUE FALSE FALSE 183012.473 216787.1371 253000.8172 159607.321 224902.0218 196401.6582 184176.9836 219269.5145 208704.0796 162890.8792 1.123528057 1.330873393 1.553192041 0.979841976 1.380691312 1.205725325 1.13067708 1.346112904 1.281250863 1 17.3135463 -10.94745204 2.534871256 0.806895056 1.262435086 0.207557737 0.151754457 13402612.27 6934898.51 15265640.92 0.036906582 1.13E-11 10.94745204 0.455540029 RRS(ph)GPLEESER ddPTM_HeLa_A485_30min_R1 1 RRSGPLEESER 11 2 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 RRS(1)GPLEESER 109.55 0.00041062 325400000 174480 245980 214550 196660 298030 220570 267950 324620 211060 245840 TRUE FALSE FALSE 213292.4741 274745.2213 293920.9732 207403.0378 268357.0868 232118.7041 210700.2935 245006.436 253417.806 184556.6123 1.155702152 1.488677202 1.592578935 1.12379088 1.454063787 1.257710039 1.141656703 1.327540817 1.373116914 1 17.4937039 -6.138091951 1.133337099 1.231633261 1.386677991 0.135431161 0.166084275 1.064893775 2.861349024 0.082461838 0.083476846 7.28E-07 6.138091951 0.15504473 RRS(ph)GPLEESER ddPTM_HeLa_A486_30min_R1 2 RRSGPLEESER 11 2 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 RRS(1)GPLEESER;RRS(1)GPLEESER ; 94.532 0.0015301 550600000 481480 522830 488480 181776 653960 495870 552340 556120 485350 540530 TRUE FALSE FALSE 447730.7384 481399.0467 677632.5379 423183.7145 571934.2389 434694.601 414138.6899 429503.616 527420.5288 405177.7697 1.10502296 1.188118112 1.672432667 1.044439617 1.411563717 1.072849089 1.022116021 1.060037465 1.301701545 1 18.6281955 -6.283523976 23.86333885 1.090766578 1.28720676 0.222845604 0.180144221 713.7571011 771241.0832 0.062713402 0.055361878 5.21E-07 6.283523976 0.196440183 RRS(ph)LGEQDQMTLRPPEK ddPTM_HeLa_A485_30min_R1 1 RRSLGEQDQMTLRPPEK 17 3 P48681 P48681 NES Nestin 1 0 RRS(1)LGEQDQMTLRPPEK 133.74 5.24E-05 378830000 256760 272080 235180 260290 358620 300740 379210 407890 268700 398430 TRUE FALSE FALSE 313875.3762 303897.3892 322182.8687 274508.9836 322914.5336 316486.2814 298188.6856 307854.338 322625.6253 299108.7336 1.049368811 1.016009749 1.077142967 0.917756497 1.079589117 1.058097761 0.996924035 1.02923888 1.07862322 1 18.19031051 RRS(ph)LS(ph)PKPR ddPTM_HeLa_A485_30min_R1 4 RRSLSPKPR 9 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 RRS(1)LS(1)PKPR;RRS(1)LS(1)PKPR;RRS(1)LS(1)PKPR;RRS(1)LS(1)PKPR ;;; 66.267 0.01115 2073310000 976330 913860 718730 1279340 1317190 1189980 1729780 1850470 956040 1667420 TRUE FALSE FALSE 1193511.24 1020727.977 984618.1359 1349227.105 1186045.939 1252285.513 1360198.372 1396639.331 1147908.459 1251762.881 0.953464317 0.815432374 0.786585184 1.077861571 0.947500487 1.000417517 1.086626224 1.115737935 0.917033471 1 20.25552987 -5.263047365 24.9995835 1.024408909 0.848187797 0.546363468 0.070452751 103.8263389 1614211.847 0.019780848 0.031158641 5.46E-06 5.263047365 -0.176221111 RRS(ph)LS(ph)PKPR ddPTM_HeLa_A486_30min_R1 3 RRSLSPKPR 9 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 RRS(1)LS(1)PKPR;RRS(1)LS(1)PKPR;RRS(1)LS(1)PKPR ;; 75.045 0.0067754 801710000 464223 423236 273147 301709 522650 478122 660470 652270 345513 743370 TRUE FALSE FALSE 431683.3649 389697.238 378916.8335 702393.7995 457094.3635 419136.1688 495213.4203 503762.36 375462.345 557225.3135 0.774701641 0.699353078 0.680006497 1.260520265 0.820304377 0.752184365 0.888713072 0.904055052 0.673807051 1 19.08790127 -1.000000829 0.025533709 1.462107249 6.77E-07 0.062879333 0.165982733 6913.048042 13.59923768 265.6838746 564.7154923 0.099999809 1.000000829 -1.462106572 RRS(ph)LS(ph)PLGGRDDS(ph)PVSHR ddPTM_HeLa_A486_30min_R1 1 RRSLSPLGGRDDSPVSHR 18 3 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 RRS(1)LS(1)PLGGRDDS(0.982)PVS(0.018)HR 72.302 0.0043257 486490000 213500 239680 244080 93946 414480 220600 303450 314200 210080 248720 TRUE FALSE FALSE 198534.7525 220686.8839 338594.3127 218711.0358 362492.0535 193384.6149 227523.6004 242663.5189 228289.9035 186438.8931 1.064878412 1.183695527 1.816114154 1.173097695 1.944294173 1.037254683 1.22036554 1.301571335 1.22447575 1 17.50834333 RRS(ph)PGLCSDSLEK ddPTM_HeLa_A485_30min_R1 2 RRSPGLCSDSLEK 13 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 RRS(0.999)PGLCS(0.001)DSLEK;RRS(0.999)PGLCS(0.001)DSLEK ; 89.502 0.0011781 860570000 544120 578710 502310 823630 798650 752360 1025480 1085040 624020 1102380 TRUE FALSE FALSE 665157.6168 646385.1004 688135.3719 868622.8214 719133.6018 791752.4062 806377.8206 818932.2387 749255.0901 827576.9538 0.803741107 0.781057396 0.831506205 1.049597645 0.868962818 0.956711521 0.974384094 0.989554186 0.905360023 1 19.65853394 -5.091126928 6.076116551 0.958982004 0.795453989 0.703958564 0.047326134 0.117289596 6.339926092 0.012340163 0.021816919 8.11E-06 5.091126928 -0.163528015 RRS(ph)PGLCSDSLEK ddPTM_HeLa_A486_30min_R1 3 RRSPGLCSDSLEK 13 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 RRS(0.994)PGLCS(0.006)DS(0.001)LEK;RRS(0.995)PGLCS(0.005)DSLEK;RRS(0.985)PGLCS(0.015)DS(0.001)LEK ;; 120.82 5.80E-05 1060010000 1242250 1270080 811080 604900 1427030 1366910 1643660 1746110 1059840 1641950 TRUE FALSE FALSE 1155174.69 1169434.235 1125151.897 1408237.77 1248038.591 1198274.542 1232398.883 1348558.87 1151707.785 1230795.033 0.93855976 0.950145397 0.914166752 1.144169202 1.014010097 0.973577655 1.001303101 1.095681112 0.935742958 1 20.2311591 RRS(ph)PPADAIPK ddPTM_HeLa_A485_30min_R1 7 RRSPPADAIPK 11 2 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2;M0R1Q8 C9JRH2 RCC1 Regulator of chromosome condensation 1 0 RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK ;;;;;; 89.911 0.0019889 65375410000 7417120 8451060 6992860 8956810 9382610 9542930 12117800 13345340 7622520 11749920 TRUE FALSE FALSE 9067032.755 9439337.953 9579809.911 9446097.85 8448444.404 10042583.06 9528733.037 10072374.44 9152289.846 8820881.185 1.027905553 1.07011281 1.086037745 1.070879162 0.957777826 1.138501114 1.080247295 1.141878485 1.037570924 1 23.07249135 RRS(ph)PPADAIPK ddPTM_HeLa_A486_30min_R1 10 RRSPPADAIPK 11 2 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2;M0R1Q8 C9JRH2 RCC1 Regulator of chromosome condensation 1 0 RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK;RRS(1)PPADAIPK ;;;;;;;;; 105.19 0.00052825 76997500000 15033460 14150580 8716850 5602710 13781460 14071480 16479800 16571670 10773600 17979370 TRUE FALSE FALSE 13979692.09 13029236.51 12092247.77 13043392.03 12052860.78 12335483.87 12356379.73 12798662.5 11707464.32 13477218.73 1.037283164 0.966760039 0.897236144 0.967810369 0.894313658 0.915284089 0.916834548 0.949651613 0.868685488 1 23.68401946 -4.390449433 2.864763039 0.924069512 1.043276946 0.46278953 0.036483317 0.255370219 3.336344321 0.008664979 0.06010357 4.07E-05 4.390449433 0.119207434 RRS(ph)PPPGPDGHAK ddPTM_HeLa_A485_30min_R1 6 RRSPPPGPDGHAK 13 2 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK ;;;;; 136.36 4.32E-06 7781928000 467304 546246 485916 577610 664831 607656 756034 761723 569317 792343 TRUE FALSE FALSE 571254.1626 610124.718 665676.5491 609163.3717 598638.0913 639471.9285 594501.1597 574909.2399 683573.6998 594826.4721 0.960371116 1.025718838 1.119110497 1.024102659 1.006407952 1.07505627 0.999453097 0.966515895 1.149198517 1 19.18210933 -4.29566119 4.557474305 1.040771939 0.957266609 0.167911243 0.054298613 0.30973239 14.94775456 0.013222487 0.074652596 5.06E-05 4.29566119 -0.08350533 RRS(ph)PPPGPDGHAK ddPTM_HeLa_A486_30min_R1 6 RRSPPPGPDGHAK 13 2 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK;RRS(1)PPPGPDGHAK ;;;;; 136.36 4.32E-06 9101130000 707583 657597 471990 267774 717326 692941 774464 754181 556903 827000 TRUE FALSE FALSE 657985.0857 605486.6188 654757.1683 623391.4045 627352.2843 607452.9847 580684.9158 582470.45 605175.8004 619913.8171 1.061413809 0.97672709 1.056206767 1.005609792 1.011999196 0.979899089 0.936718782 0.939599076 0.976225701 1 19.24170813 -6.30177398 2.333345766 0.958036375 1.022775112 0.498953601 0.028279182 0.238209109 2.549777429 0.010560415 0.009488973 4.99E-07 6.30177398 0.064738737 RRS(ph)PPPGPDGHAKK ddPTM_HeLa_A485_30min_R1 6 RRSPPPGPDGHAKK 14 3 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK ;;;;; 170.5 3.62E-12 3450836000 1447351 2031171 1065450 1191315 1989850 2537166 3339179 4783694 1512185 1739267 TRUE FALSE FALSE 1769309.237 2268698.78 1459604.292 1256393.522 1791733.547 2670008.089 2625736.128 3610485.546 1815666.659 1305699.746 1.355065927 1.737534825 1.117871315 0.962237701 1.372240098 2.044886734 2.010980041 2.765172895 1.390569819 1 20.31639175 -6.221705051 6.076143624 1.963470852 1.299065756 0.220891674 0.474706678 0.253155058 26.51676024 0.155577772 0.153367789 6.00E-07 6.221705051 -0.664405097 RRS(ph)PPPGPDGHAKK ddPTM_HeLa_A486_30min_R1 4 RRSPPPGPDGHAKK 14 3 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK ;;; 204.05 6.25E-22 2231520000 1912240 1279250 747390 775480 1567180 1317710 1849720 1817900 887730 2214390 TRUE FALSE FALSE 1778201.851 1177877.571 1036799.424 1805356.631 1370609.671 1155144.338 1386900.492 1404003.854 964679.1512 1659892.331 1.071275418 0.709610828 0.62461848 1.08763478 0.825722034 0.695915221 0.835536418 0.845840317 0.581169714 1 20.66265823 -6.005259667 24.96591421 0.78213327 0.857937763 0.046156349 0.166405752 894.8893398 4247774.071 0.052126812 0.057465171 9.88E-07 6.005259667 0.075804494 RRS(ph)PQEGPTWSR ddPTM_HeLa_A485_30min_R1 1 RRSPQEGPTWSR 12 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 RRS(1)PQEGPTWSR 130.12 2.11E-05 753060000 97113 137910 120980 103840 173460 140390 158520 191040 114660 136410 TRUE FALSE FALSE 118715.4518 154037.3748 165735.5364 109512.5163 156189.7133 147740.6033 124650.907 144187.1405 137671.2103 102405.4974 1.159268348 1.504190485 1.618424211 1.069400755 1.525208287 1.442701876 1.217228666 1.408001954 1.344373239 1 16.64393364 -12.17603389 0.351254915 1.02E-13 1.386646942 0.308039307 0.164127209 127.5408577 3.500695261 94.0461774 0.124775556 6.67E-13 12.17603389 1.386646942 RRS(ph)PQEGPTWSR ddPTM_HeLa_A486_30min_R1 2 RRSPQEGPTWSR 12 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 RRS(0.998)PQEGPTWS(0.001)R;RRS(1)PQEGPTWSR ; 71.286 0.0081439 929330000 481690 563040 547610 120529 639570 432610 364050 436100 603470 237740 TRUE FALSE FALSE 447926.0184 518422.6598 759659.2575 280597.6032 559349.1668 379238.9767 272960.8395 336809.55 655779.2655 178208.3566 2.513496152 2.909081649 4.262758897 1.574547954 3.138737024 2.128065058 1.531694948 1.889976186 3.679845761 1 17.44320546 -5.278240588 24.9838378 2.188211446 3.196509342 0.258860891 0.844185282 1155.619562 1718433.949 0.234099192 0.348284761 5.27E-06 5.278240588 1.008297896 RRS(ph)PRPS(ph)PVPK ddPTM_HeLa_A485_30min_R1 3 RRSPRPSPVPK 11 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 RRS(1)PRPS(1)PVPK;RRS(1)PRPS(1)PVPK;RRS(1)PRPS(1)PVPK ;; 79.771 0.0042941 316317000 143226 123609 107809 211680 144572 133134 168361 135651 135139 246914 TRUE FALSE FALSE 175086.1296 138063.9973 147692.0354 223243.5424 130177.9041 140104.6904 132389.297 102382.3796 162260.1577 185362.8839 0.944558727 0.744830866 0.79677243 1.204359458 0.702286786 0.755840044 0.71421686 0.552334844 0.875364875 1 17.49999287 RRS(ph)PRPS(ph)PVPK ddPTM_HeLa_A486_30min_R1 4 RRSPRPSPVPK 11 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 RRS(1)PRPS(1)PVPK;RRS(1)PRPS(1)PVPK;RRS(1)PRPS(1)PVPK;RRS(1)PRPS(1)PVPK ;;; 95.428 0.0011952 462653000 248388 262162 148384 106621 208608 276332 275463 271025 230710 327196 TRUE FALSE FALSE 230977.2839 241387.3283 205842.2587 248219.0763 182442.4394 242240.9674 206539.2438 209318.5239 250708.1286 245263.9919 0.941749672 0.984193915 0.839268158 1.012048586 0.743861494 0.987674405 0.842109933 0.853441723 1.022197048 1 17.90397592 -7.773275151 24.99610603 1.011098619 0.900740005 0.23715272 0.07931215 347.9586447 734834.378 0.069848638 0.018623145 1.69E-08 7.773275151 -0.110358614 RRS(ph)PS(ph)LSSK ddPTM_HeLa_A485_30min_R1 5 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(1)PS(0.927)LS(0.073)S(0.001)K;RRS(1)PS(0.999)LS(0.001)SK;RRS(1)PS(0.907)LS(0.076)S(0.017)K;RRS(0.999)PS(0.62)LS(0.341)S(0.04)K;RRS(1)PS(0.996)LS(0.004)SK ;;;; 93.649 0.010874 30830130000 8850870 9516940 7484190 10362700 11316000 10679800 14223600 15558200 8666210 13755000 TRUE FALSE FALSE 10819715.5 10629863.35 10252903.32 10928788.06 10189339.31 11238977.81 11184611.66 11742527.06 10405438.86 10326131.64 1.047799493 1.02941389 0.992908446 1.058362264 0.9867528 1.088401563 1.083136653 1.13716612 1.007680244 1 23.29979656 -6.277829775 24.87630016 1.073091033 1.023688625 0.163771344 0.042649577 1089.886774 1654154.052 0.014307431 0.01264826 5.27E-07 6.277829775 -0.049402409 RRS(ph)PS(ph)LSSK ddPTM_HeLa_A486_30min_R1 4 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(0.998)PS(0.689)LS(0.311)S(0.003)K;RRS(1)PS(0.982)LS(0.018)SK;RRS(1)PS(0.986)LS(0.012)S(0.002)K;RRS(1)PS(0.969)LS(0.031)S(0.001)K ;;; 105.99 0.0041509 37299200000 5947200 5387600 3507300 2487220 5755500 5918600 7161700 6814400 4429000 7627800 TRUE FALSE FALSE 5530331.991 4960666.955 4865420.489 5790373.857 5033591.522 5188423.308 5369766.911 5262909.877 4812909.286 5717749.231 0.96722185 0.867590857 0.850932822 1.012701611 0.880344926 0.907424075 0.939139982 0.920451329 0.841748928 1 22.44701592 -10.0639128 4.619857014 1.000004077 0.910036904 0.222585967 0.050608554 2.16E-06 4.37E-07 0.047597563 0.011543558 8.63E-11 10.0639128 -0.089967173 RRS(ph)PS(ph)PAPPPR ddPTM_HeLa_A485_30min_R1 2 RRSPSPAPPPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(1)PS(1)PAPPPR;RRS(1)PS(1)PAPPPR ; 91.657 0.0093945 40407000000 2382940 3492000 3638700 2488190 3979600 3450900 3781100 4237400 3222300 3286400 TRUE FALSE FALSE 2913016.782 3900359.024 4984806.549 2624113.519 3583377.051 3631583.788 2973237.096 3198171.006 3868986.053 2467160.962 1.180716146 1.580909833 2.02046264 1.063616667 1.452429374 1.47196873 1.205124896 1.296296049 1.568193609 1 21.23442041 -5.287366821 24.99910974 1.316612824 1.59271783 0.225858734 0.252154354 1177.436147 1135275.318 0.070556893 0.104691403 5.16E-06 5.287366821 0.276105007 RRS(ph)PS(ph)PAPPPR ddPTM_HeLa_A486_30min_R1 2 RRSPSPAPPPR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(1)PS(1)PAPPPR;RRS(1)PS(1)PAPPPR ; 86.578 0.012003 39836000000 1989370 2201300 2044010 752990 2646000 1920110 2211300 2185300 1849580 2141000 TRUE FALSE FALSE 1849925.436 2026860.971 2835505.412 1752998.774 2314114.007 1683226.35 1658009.351 1687754.895 2009903.084 1604879.664 1.152687941 1.262936416 1.766802506 1.092292969 1.44192369 1.048817795 1.033105091 1.051639529 1.252369962 1 20.6140337 -6.269992645 24.71845406 1.077658844 1.34844236 0.345597822 0.183045425 645.0406567 1864125.504 0.063682329 0.057061246 5.37E-07 6.269992645 0.270783515 RRS(ph)PS(ph)PGSQGPAGSGR ddPTM_HeLa_A485_30min_R1 1 RRSPSPGSQGPAGSGR 16 2 Q9Y5B0-4 Q9Y5B0-4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 2 0 RRS(0.982)PS(0.557)PGS(0.462)QGPAGSGR 71.202 0.030396 79892000 37518 47215 44834 42544 50492 50776 53727 69717 45465 61027 TRUE FALSE FALSE 45863.74966 52736.38353 61419.9623 44868.07099 45464.83919 53434.55285 42247.78754 52618.79644 54589.40847 45814.09202 1.001083895 1.151095246 1.340634717 0.979350873 0.992376738 1.166334429 0.922157041 1.148528632 1.191541861 1 15.48350381 -5.322453193 24.99977999 1.059594448 1.162958958 0.158069715 0.113147578 450.5841763 184621.0999 0.032362698 0.048001669 4.76E-06 5.322453193 0.103364511 RRS(ph)PS(ph)PKPTK ddPTM_HeLa_A485_30min_R1 5 RRSPSPKPTK 10 3 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 RRS(0.996)PS(0.868)PKPT(0.136)K;RRS(1)PS(0.992)PKPT(0.008)K;RRS(0.996)PS(0.708)PKPT(0.296)K;RRS(0.994)PS(0.942)PKPT(0.064)K;RRS(1)PS(0.987)PKPT(0.013)K ;;;; 88.092 0.0020839 2785790000 2400190 886603 394007 3645510 532738 2292850 1329052 1683540 1075951 2856120 TRUE FALSE FALSE 2934103.985 990283.5084 539766.5853 3844654.98 479696.7342 2412900.081 1045089.183 1270649.175 1291884.496 2144141.847 1.368428115 0.461855408 0.251740148 1.793097311 0.223724347 1.125345361 0.487416065 0.592614326 0.602518205 1 21.03196892 -6.791471149 24.99693991 0.636688473 0.83649995 0.035459298 0.47923296 848.10759 705914.5029 0.193969626 0.130793153 1.62E-07 6.791471149 0.199811478 RRS(ph)PS(ph)PKPTK ddPTM_HeLa_A486_30min_R1 5 RRSPSPKPTK 10 3 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 RRS(0.999)PS(0.91)PKPT(0.091)K;RRS(1)PS(0.962)PKPT(0.038)K;RRS(0.998)PS(0.735)PKPT(0.267)K;RRS(1)PS(0.99)PKPT(0.01)K;RRS(1)PS(0.99)PKPT(0.01)K ;;;; 102.5 0.0007706 2180250000 2644420 908998 1039856 1245639 665913 4742541 2020087 1644608 2780139 4925660 TRUE FALSE FALSE 2459059.814 836965.688 1442516.092 2899910.543 582387.9821 4157454.51 1514639.866 1270166.66 3021123.687 3692242.675 0.666007094 0.226682199 0.390688321 0.785406269 0.157732856 1.125997091 0.410222187 0.344009528 0.818235407 1 21.81606595 -14 0.14812057 2.685588654 0.384354511 0.2162849 0.280339908 210.2206126 1.858229509 103.7218952 1.435725074 1.00E-14 14 -2.301234143 RRS(ph)PS(ph)PPPTR ddPTM_HeLa_A485_30min_R1 1 RRSPSPPPTR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(1)PS(1)PPPTR 90.707 0.0020284 262560000 87373 123470 139010 107410 148190 117430 130210 146610 122000 134420 TRUE FALSE FALSE 106808.8224 137908.7425 190435.5837 113277.5363 133435.6833 123578.4532 102389.5698 110653.6676 146484.2809 100911.5678 1.058439827 1.366629668 1.887153156 1.122542626 1.322303143 1.224621279 1.014646507 1.096540962 1.451610396 1 16.62273204 RRS(ph)PS(ph)PPPTR ddPTM_HeLa_A486_30min_R1 1 RRSPSPPPTR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(1)PS(1)PPPTR 105.19 0.0006318 285440000 159270 187180 169370 60153 215970 162000 175790 190230 159000 180550 TRUE FALSE FALSE 148105.9955 172347.1751 234954.5999 140039.224 188881.0288 142014.0871 131805.4827 146918.7817 172782.248 135339.1048 1.094332608 1.273446986 1.736043697 1.034728463 1.395613108 1.049320426 0.973890605 1.085560466 1.276661673 1 17.04621923 -6.269813611 24.54896848 1.075984398 1.313706319 0.262571664 0.192333744 701.8409548 2057432.881 0.06759654 0.060626237 5.37E-07 6.269813611 0.237721921 RRS(ph)PS(ph)PTPTPGPSR ddPTM_HeLa_A485_30min_R1 2 RRSPSPTPTPGPSR 14 2 F8WD88;P49450-2;P49450 F8WD88 CENPA Histone H3-like centromeric protein A 2 0 RRS(0.978)PS(0.836)PT(0.108)PT(0.077)PGPS(0.001)R;RRS(1)PS(0.998)PT(0.002)PTPGPSR ; 87.654 0.0057493 1918250000 210695 364960 398480 219455 428340 321570 350070 640160 352030 560840 TRUE FALSE FALSE 257563.3759 407638.8973 545894.3341 231443.271 385692.9656 338406.908 275274.6847 483159.7563 422679.192 421032.9095 0.611741672 0.968187731 1.296559774 0.549703517 0.916063702 0.803754054 0.653808 1.147558173 1.003910104 1 18.68357348 -7.279217459 24.57882988 1.056800601 0.843604761 0.195766286 0.204438128 1230.735122 1701524.216 0.112727061 0.054347898 5.26E-08 7.279217459 -0.21319584 RRS(ph)PS(ph)PTPTPGPSR ddPTM_HeLa_A486_30min_R1 1 RRSPSPTPTPGPSR 14 2 F8WD88;P49450-2;P49450 F8WD88 CENPA Histone H3-like centromeric protein A 2 0 RRS(0.99)PS(0.499)PT(0.499)PT(0.011)PGPSR 73.928 0.030459 107550000 71903 86526 78561 30237 104210 65798 84771 88971 72508 76028 TRUE FALSE FALSE 66862.97101 79669.36464 108981.9231 70393.26409 91139.01008 57680.51175 63560.39918 68714.24552 78793.05182 56990.09394 1.173238477 1.397951102 1.912295903 1.235184209 1.599207929 1.012114698 1.115288549 1.205722623 1.382574521 1 15.79842355 -6.259787121 24.99496877 1.154257021 1.472170227 0.356695321 0.214750106 179.1759396 2710541.391 0.073387715 0.069773321 5.50E-07 6.259787121 0.317913207 RRS(ph)PS(ph)PYYSR ddPTM_HeLa_A485_30min_R1 2 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.989)PS(0.797)PY(0.017)Y(0.001)S(0.197)R;RRS(0.947)PS(0.715)PY(0.282)Y(0.005)S(0.05)R ; 126.09 0.0027306 15813400000 2442800 3467540 3235810 2664150 3761410 3250720 3702610 4222300 3341310 3124390 TRUE FALSE FALSE 2986192.432 3873038.639 4432870.772 2809685.769 3386910.813 3420922.673 2911517.126 3186774.305 4011880.269 2345537.073 1.273138023 1.651237443 1.889917164 1.197885892 1.443980934 1.458481604 1.241300834 1.358654417 1.710431404 1 21.16148687 -5.279024834 24.95536575 1.363942638 1.609411587 0.216935101 0.224501458 1238.247816 1757183.713 0.062096288 0.092322029 5.26E-06 5.279024834 0.24546895 RRS(ph)PS(ph)PYYSR ddPTM_HeLa_A486_30min_R1 2 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.864)PS(0.496)PY(0.16)Y(0.105)S(0.375)R;RRS(0.965)PS(0.584)PY(0.044)Y(0.028)S(0.38)R ; 80.737 0.0037245 1306100000 1183920 1336090 1208030 385790 1527040 1196740 1240620 1321130 1155080 1285720 TRUE FALSE FALSE 1100933.322 1230213.362 1675811.568 898138.6167 1335504.404 1049098.386 930203.7541 1020337.539 1255203.264 963767.3434 1.142322708 1.276463008 1.738813397 0.931903973 1.385712447 1.088539048 0.965174594 1.058696942 1.302392401 1 19.87832539 -5.890577744 1.324825739 1.085445512 1.337313267 0.182915526 0.21057148 0.722756989 2.652926965 0.086523584 0.108168041 1.29E-06 5.890577744 0.251867755 RRS(ph)PSLS(ph)SK ddPTM_HeLa_A485_30min_R1 1 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(0.998)PS(0.015)LS(0.986)S(0.002)K 108.07 0.0037854 2312700000 1030300 1112500 912300 1337400 1413700 1430300 1738200 1977300 1116000 1830900 TRUE FALSE FALSE 1259486.681 1242597.198 1249797.734 1410458.776 1272947.064 1505188.296 1366819.37 1492364.075 1339970.963 1374490.325 0.916329971 0.904042156 0.909280852 1.026168573 0.926122971 1.095088317 0.994419055 1.085758151 0.9748857 1 20.39046532 -5.421917884 1.133053636 1.028184152 0.900303379 0.480569113 0.048250328 0.414464036 1.057897124 0.017322343 0.038547302 3.79E-06 5.421917884 -0.127880774 RRS(ph)PSLSS(ph)K ddPTM_HeLa_A485_30min_R1 1 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(0.772)PS(0.238)LS(0.008)S(0.982)K 117.27 0.014883 1050000000 345290 376900 288420 451350 472540 450650 595020 669680 358520 621060 TRUE FALSE FALSE 422098.5693 420975.1764 395118.5602 476006.1076 425492.2584 474245.3372 467889.1161 505439.93 430471.6755 466241.1718 0.905322384 0.902912917 0.847455317 1.020943959 0.912601212 1.017167436 1.003534532 1.084073996 0.923281129 1 18.83071688 -5.591304746 1.102281186 1.008523071 0.88667121 0.422764668 0.052830259 0.467915719 1.179476746 0.020815233 0.038103275 2.56E-06 5.591304746 -0.121851862 RRS(ph)PSLSSK ddPTM_HeLa_A485_30min_R1 10 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RRS(0.999)PS(0.001)LSSK;RRS(0.999)PS(0.001)LSSK;RRS(0.98)PS(0.019)LSS(0.001)K;RRS(0.93)PS(0.07)LSSK;RRS(0.999)PS(0.001)LSSK;RRS(1)PSLSSK;RRS(0.999)PS(0.001)LSSK;RRS(0.987)PS(0.013)LSSK;RRS(0.996)PS(0.004)LSSK;RRS(0.876)PS(0.123)LSSK ;;;;;;;;; 160.18 9.90E-06 85347290000 3973124 5505187 3953329 4513698 5310185 5515640 6770460 8430530 4883380 6290670 TRUE FALSE FALSE 4856931.727 6148970.731 5415829.909 4760269.892 4781484.336 5804430.382 5323895.911 6362929.299 5863429.573 4722521.74 1.028461486 1.302052393 1.146808889 1.007993219 1.012485405 1.229095534 1.127341748 1.347358392 1.241588688 1 22.17112601 -6.295229148 24.86720477 1.20692834 1.10834767 0.117794395 0.116279781 1243.773364 915337.094 0.041883157 0.03693944 5.07E-07 6.295229148 -0.09858067 RRS(ph)PSLSSK ddPTM_HeLa_A486_30min_R1 10 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RRS(0.998)PS(0.002)LSSK;RRS(0.926)PS(0.074)LSSK;RRS(0.992)PS(0.008)LSSK;RRS(0.936)PS(0.064)LSSK;RRS(0.992)PS(0.008)LSSK;RRS(0.999)PS(0.001)LSSK;RRS(1)PSLSSK;RRS(1)PSLSSK;RRS(0.995)PS(0.005)LSSK;RRS(0.898)PS(0.102)LSSK ;;;;;;;;; 151.52 4.49E-05 66892430000 4992510 4595305 3584816 1959549 4811083 5056364 5798450 4806561 4305657 5813510 TRUE FALSE FALSE 4642560.83 4231156.296 4972952.76 4561929.102 4207632.109 4432561.219 4347616.48 3712211.987 4678874.816 4357769.256 1.065352605 0.970945465 1.141169362 1.046849623 0.965547247 1.017162901 0.99767019 0.851860612 1.073685764 1 22.05515838 -5.710813057 6.425445559 0.97924685 1.056841652 0.224997579 0.06493341 0.292698722 26.88202834 0.018978004 0.0243202 1.95E-06 5.710813057 0.077594802 RRS(ph)PSPT(ph)PTPGPSR ddPTM_HeLa_A486_30min_R1 1 RRSPSPTPTPGPSR 14 2 F8WD88;P49450-2;P49450 F8WD88 CENPA Histone H3-like centromeric protein A 2 0 RRS(0.996)PS(0.127)PT(0.554)PT(0.322)PGPS(0.001)R 81.867 0.0032223 1241700000 263640 272610 270320 88375 376180 218840 277370 303120 242480 243310 TRUE FALSE FALSE 245160.1974 251007.3908 374995.1434 205741.4662 328995.9967 191841.7458 207969.0923 234106.1931 263498.3616 182383.5923 1.344200947 1.376260812 2.05607938 1.12807004 1.803868388 1.051858577 1.140284001 1.2835924 1.444748172 1 17.47661642 -6.274130551 24.9844109 1.199082865 1.538102727 0.311767031 0.26516191 1021.223646 2010421.243 0.090762571 0.080568142 5.32E-07 6.274130551 0.339019862 RRS(ph)PSPY(ph)YSR ddPTM_HeLa_A485_30min_R1 3 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.917)PS(0.123)PY(0.613)Y(0.167)S(0.181)R;RRS(0.68)PS(0.338)PY(0.613)Y(0.35)S(0.019)R;RRS(0.654)PS(0.356)PY(0.368)Y(0.206)S(0.416)R ;; 103.13 0.0011688 64129200000 3751776 5327860 5396210 3492530 5564030 5195080 5561860 6540400 4832690 4561500 TRUE FALSE FALSE 4586345.628 5950906.881 7392492.634 3683318.07 5010055.637 5467086.356 4373523.175 4936356.645 5802566.555 3424401.998 1.339312858 1.737794477 2.158768929 1.075609135 1.463045413 1.596508342 1.277164065 1.441523702 1.69447587 1 21.70742064 -12.24705413 0.176723704 2.12E-11 1.664228828 0.231875986 0.283096661 101.6765975 1.709151724 39.63006861 1.027573253 5.66E-13 12.24705413 1.664228828 RRS(ph)PSPY(ph)YSR ddPTM_HeLa_A486_30min_R1 1 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.775)PS(0.242)PY(0.83)Y(0.091)S(0.06)R 88.78 0.0033122 1.33E+11 1797600 2014200 1747700 663540 2321000 1683400 1871200 1783200 1601500 1709300 TRUE FALSE FALSE 1671597.523 1854587.456 2424456.245 1544754.653 2029878.538 1475719.224 1403005.968 1377204.287 1740319.309 1281280.154 1.304630777 1.447448827 1.892213999 1.205633794 1.584258158 1.151753751 1.095003278 1.074865854 1.358266031 1 20.28915453 -6.273228478 22.88015006 1.138095893 1.491547396 0.459846506 0.190090778 224.1069585 434941.7573 0.06578276 0.058588606 5.33E-07 6.273228478 0.353451503 RRS(ph)PSPYYS(ph)R ddPTM_HeLa_A485_30min_R1 3 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.598)PS(0.415)PY(0.192)Y(0.211)S(0.585)R;RRS(0.93)PS(0.111)PY(0.189)Y(0.103)S(0.667)R;RRS(0.942)PS(0.059)PY(0.026)Y(0.016)S(0.957)R ;; 97.767 0.0075019 82397600000 7789520 10666470 11339580 7984720 12670000 10065440 12002500 12982300 10494930 9278580 TRUE FALSE FALSE 9522271.85 11913820.88 15534562.52 8420905.035 11408530.31 10592450.87 9438067.824 9798370.57 12601166.19 6965600.766 1.367042438 1.710379518 2.230182729 1.208927316 1.637838673 1.520680158 1.354953886 1.406679897 1.809056621 1 22.73181636 -5.293193821 24.99973763 1.447273458 1.763319865 0.234965017 0.285906204 1007.17404 792928.977 0.078910819 0.117055405 5.09E-06 5.293193821 0.316046407 RRS(ph)PSPYYS(ph)R ddPTM_HeLa_A486_30min_R1 1 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.652)PS(0.371)PY(0.144)Y(0.037)S(0.796)R 109.14 0.0028938 20903000000 3607200 3821300 3548700 1187100 4951000 3424500 3415300 4055600 2883100 3780000 TRUE FALSE FALSE 3354353.908 3518486.271 4922851.677 2763628.793 4329999.414 3002020.008 2560755.817 3132228.413 3133009.429 2833463.396 1.183835271 1.241761681 1.737397308 0.975353624 1.528164937 1.059487838 0.903754684 1.105441636 1.105717276 1 21.43413513 -6.385163731 7.614909229 1.030059454 1.330266349 0.364814282 0.19712529 0.305954178 17.69152436 0.067576983 0.059473942 4.12E-07 6.385163731 0.300206895 RRS(ph)PSYS(ph)R ddPTM_HeLa_A486_30min_R1 1 RRSPSYSR 8 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 RRS(0.996)PS(0.05)Y(0.004)S(0.95)R 80.245 0.032904 641810000 317610 245000 277340 105420 274690 271450 262970 209200 298720 306940 TRUE FALSE FALSE 295347.1791 225585.3077 384733.4754 245423.0876 240235.8188 237961.2589 197172.1246 161569.7268 324613.2901 230080.2262 1.283670414 0.980463691 1.672170972 1.066684833 1.044139354 1.034253412 0.856971187 0.702232128 1.410870006 1 17.81177747 -5.502971472 24.62756842 0.993167186 1.294019582 0.260297239 0.228784616 854.8827842 1057587.263 0.063529466 0.092746548 3.14E-06 5.502971472 0.300852395 RRS(ph)QFFEQGSSDSVVPDLPVPTISAPSR ddPTM_HeLa_A485_30min_R1 4 RRSQFFEQGSSDSVVPDLPVPTISAPSR 28 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RRS(0.641)QFFEQGS(0.166)S(0.166)DS(0.028)VVPDLPVPTISAPSR;RRS(0.261)QFFEQGS(0.261)S(0.261)DS(0.217)VVPDLPVPTISAPSR;RRS(0.987)QFFEQGS(0.005)S(0.008)DS(0.001)VVPDLPVPTISAPSR;RRS(0.265)QFFEQGS(0.265)S(0.265)DS(0.206)VVPDLPVPTISAPSR ;;; 185.35 1.02E-20 2472110000 443119 610056 557383 345166 701075 611635 687700 910800 508907 499219 TRUE FALSE FALSE 541689.2928 681396.7424 763582.1663 364021.5446 631273.5114 643659.2628 540767.277 687424.8719 611039.9669 374772.8907 1.445380139 1.818159102 2.037453042 0.97131237 1.684416154 1.71746484 1.44291994 1.834243855 1.630427339 1 18.51565707 -10.00898261 4.04213454 0.99994369 1.62503822 0.313941987 0.274963216 91687767.64 184218228.1 78513.84859 0.067967076 9.80E-11 10.00898261 0.62509453 RRS(ph)QFFEQGSSDSVVPDLPVPTISAPSR ddPTM_HeLa_A486_30min_R1 2 RRSQFFEQGSSDSVVPDLPVPTISAPSR 28 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RRS(0.655)QFFEQGS(0.14)S(0.14)DS(0.064)VVPDLPVPTISAPSR;RRS(0.25)QFFEQGS(0.25)S(0.25)DS(0.25)VVPDLPVPTISAPSR ; 98.326 0.00060205 1071340000 238786 265980 242940 80572 303730 217111 246830 285300 213980 228840 TRUE FALSE FALSE 222048.3345 244902.7761 337012.8742 187575.6879 265633.3512 190326.0522 185070.5233 220343.4181 232527.9587 171536.9745 1.294463396 1.427696722 1.964666074 1.093500037 1.548548655 1.10953369 1.078895811 1.284524335 1.355555905 1 17.38816005 -5.907336123 1.496145712 1.186280569 1.512384257 0.264931438 0.232998935 0.554264026 2.566062934 0.091130179 0.109960486 1.24E-06 5.907336123 0.326103688 RRS(ph)QS(ph)IEQESQEK ddPTM_HeLa_A485_30min_R1 1 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 RRS(0.999)QS(0.832)IEQES(0.169)QEK 161.55 3.38E-11 5616100000 3603800 3157600 2608400 4527100 4378700 3707700 5308500 5270200 3091600 5740800 TRUE FALSE FALSE 4405452.877 3526853.853 3573355.705 4774404.01 3942741.253 3901829.439 4174295.609 3977675.187 3712055.762 4309724.212 1.022212249 0.818347922 0.829137905 1.107821238 0.914847693 0.905354785 0.96857604 0.922953533 0.861320952 1 22.03916412 RRS(ph)QS(ph)IEQESQEK ddPTM_HeLa_A486_30min_R1 1 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 RRS(0.999)QS(0.746)IEQES(0.255)QEK 171.29 1.43E-11 7663600000 5100200 4831000 3162700 2389000 5075800 5080200 6480100 6487400 3933900 7039000 TRUE FALSE FALSE 4742702.317 4448173.966 4387382.14 5561712.733 4439145.834 4453456.576 4858710.44 5010360.639 4274893.619 5276388.584 0.898853874 0.843033809 0.831512325 1.054075651 0.841322765 0.844034988 0.920840147 0.949581434 0.810193099 1 22.33111939 -10.27174802 3.913939546 1.000149469 0.890139571 0.189543805 0.069269832 95698030.66 259298.3636 133659.3336 0.016593943 5.35E-11 10.27174802 -0.110009899 RRS(ph)QSIEQES(ph)QEK ddPTM_HeLa_A485_30min_R1 1 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 RRS(0.998)QS(0.018)IEQES(0.985)QEK 237.84 2.70E-34 6664400000 4497600 4410900 3703300 6351300 5883900 5422400 7909300 7788400 4766100 8217500 TRUE FALSE FALSE 5498075.603 4926716.385 5073304.777 6698255.437 5298078.256 5706308.479 6219413.442 5878282.688 5722612.553 6169028.482 0.891238486 0.798621112 0.822383102 1.085787731 0.8588189 0.924993051 1.008167406 0.952870084 0.927635943 1 22.55661188 -5.206391478 24.99989352 0.959153017 0.833534779 0.479368824 0.060866196 261.5545565 118783.9276 0.016048897 0.027797487 6.22E-06 5.206391478 -0.125618238 RRS(ph)QSIEQES(ph)QEK ddPTM_HeLa_A486_30min_R1 2 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 RRS(0.999)QS(0.014)IEQES(0.987)QEK;RRS(0.994)QS(0.014)IEQES(0.992)QEK ; 180.39 1.16E-15 1190970000 1428750 1352210 747080 672060 1393700 1512800 1796980 1783710 1040130 1974270 TRUE FALSE FALSE 1328602.003 1245055.955 1036369.383 1564589.644 1218889.15 1326166.117 1347356.597 1377598.171 1130289.306 1479899.942 0.897764751 0.841310902 0.700296928 1.057226641 0.823629433 0.896118771 0.910437631 0.930872509 0.763760626 1 20.49706821 -5.245916162 24.99934807 0.904466477 0.815942891 0.199561187 0.089615882 1469.925856 2367236.746 0.023436967 0.040417935 5.68E-06 5.245916162 -0.088523586 RRS(ph)QSIEQESQEK ddPTM_HeLa_A485_30min_R1 2 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RRS(0.986)QS(0.014)IEQESQEK;RRS(0.965)QS(0.034)IEQES(0.001)QEK ; 152.32 3.40E-08 948160000 253210 337550 293730 349420 606410 397190 574810 728580 357800 499030 TRUE FALSE FALSE 309535.6909 377023.5362 402392.9501 368507.9298 546033.6912 417986.2542 451997.1477 549894.6126 429607.1781 374631.005 0.82624152 1.006386367 1.074104772 0.983655717 1.457524027 1.115727873 1.20651292 1.467829959 1.146747526 1 18.51511078 -4.841827263 0.884240357 1.243694516 0.801696834 0.385099482 0.152196287 1.053890529 1.133346686 0.057552754 0.383527673 1.44E-05 4.841827263 -0.441997682 RRS(ph)QSIEQESQEK ddPTM_HeLa_A486_30min_R1 2 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RRS(0.824)QS(0.176)IEQESQEK;RRS(0.5)QS(0.5)IEQESQEK ; 151.44 3.79E-08 874640000 519460 603190 595000 486400 1240840 753740 1100200 1236360 451530 747730 TRUE FALSE FALSE 483048.5365 555391.0276 825399.9347 1132363.781 1085202.277 660751.2223 824918.3233 954867.8175 490668.984 560493.5411 0.861827124 0.990896392 1.472630591 2.020297645 1.93615483 1.178873928 1.471771328 1.703619663 0.875423083 1 19.09633822 -7.773429176 24.99720093 0.937711106 1.46596131 0.251929438 0.355777232 384.7543113 802138.2287 0.367467372 0.097856276 1.68E-08 7.773429176 0.528250204 RRS(ph)S(ph)RSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 RRS(0.99)S(0.992)RS(0.112)S(0.872)PELT(0.035)R 60.158 0.030517 1249200000 459460 541240 560520 446370 707970 602310 639560 635080 537870 598930 TRUE FALSE FALSE 561665.2919 604533.3098 767879.6732 470754.0628 637482.021 633846.0203 502912.7813 479325.6342 645815.5754 449627.7735 1.249178376 1.344519501 1.707811925 1.046986175 1.417799474 1.409712784 1.118509156 1.066049881 1.436333815 1 18.77837163 -8.329594639 0.238920975 0.917825833 1.430389984 0.213833123 0.188702227 6.177936357 0.950632673 1.029541671 0.475060465 4.68E-09 8.329594639 0.512564151 RRS(ph)S(ph)RSSPELTR ddPTM_HeLa_A485_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRS(0.535)S(0.578)RS(0.547)S(0.34)PELTR 63.037 0.013785 550550000 24010 37479 43416 10659 43960 35611 45157 55115 23328 25512 TRUE FALSE FALSE 29350.94167 41861.84303 59477.38509 11241.27418 39583.18805 37475.53689 35508.83805 41597.95983 28009.71562 19152.32791 1.532499955 2.185731323 3.105491163 0.586940357 2.06675597 1.956709235 1.854022039 2.171953197 1.462470554 1 14.22523214 -7.994871769 4.608992067 1.001486375 1.935582297 0.203060225 0.591249324 0.252116868 16.13064909 0.560550072 0.146524689 1.01E-08 7.994871769 0.934095923 RRS(ph)S(ph)SPFLSK ddPTM_HeLa_A485_30min_R1 3 RRSSSPFLSK 10 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.99)S(0.539)S(0.439)PFLS(0.031)K;RRS(1)S(0.893)S(0.107)PFLS(0.001)K;RRS(0.845)S(0.688)S(0.467)PFLSK ;; 137.21 0.00012716 1523550000 1821330 1660630 1574590 2306040 2527180 1931370 2487440 2226260 2045940 3330200 TRUE FALSE FALSE 2226478.575 1854826.233 2157096.365 2432013.126 2275565.086 2032493.547 1955978.123 1680266.244 2456541.392 2500042.428 0.890576316 0.741917902 0.862823903 0.972788741 0.910210587 0.812983621 0.782377972 0.672095092 0.982599881 1 21.25352115 -6.282958743 23.51497172 0.825290169 0.872915724 0 0.104724023 1457.449195 1592598.532 0.037087198 0.032747601 5.21E-07 6.282958743 0.047625555 RRS(ph)S(ph)SPFLSK ddPTM_HeLa_A486_30min_R1 2 RRSSSPFLSK 10 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.997)S(0.502)S(0.501)PFLSK;RRS(0.999)S(0.818)S(0.183)PFLSK ; 119.96 0.00099441 2529900000 2226800 2406300 1806650 860240 2827400 2374700 2752500 2768400 2054110 2377500 TRUE FALSE FALSE 2070712.819 2215616.024 2506233.264 2002682.194 2472761.128 2081733.658 2063795.387 2138095.754 2232161.909 1782158.525 1.16191281 1.243220507 1.406290871 1.123739648 1.387509076 1.168096793 1.158031319 1.199722541 1.252504689 1 20.76519424 -6.421242448 24.96469657 1.168266646 1.264844508 0.21949699 0.101257559 65.04995976 15962.57265 0.034067456 0.030044669 3.79E-07 6.421242448 0.096577862 RRS(ph)S(ph)SPFLSKR ddPTM_HeLa_A485_30min_R1 1 RRSSSPFLSKR 11 3 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.934)S(0.846)S(0.214)PFLS(0.006)KR 51.073 0.027984 660740000 255730 372290 271660 229360 404000 471780 577650 794410 279600 363900 TRUE FALSE FALSE 312616.2562 415826.077 372158.3387 241889.356 363776.3415 496481.6713 454230.3585 599579.7019 335713.1554 273186.4271 1.144333046 1.522133004 1.362287075 0.885436947 1.331604741 1.817373127 1.662712029 2.194763877 1.228879337 1 18.05952628 -6.12770045 5.753953301 1.65853415 1.242257007 0.17759549 0.34089828 0.329378711 14.07089976 0.109880283 0.11024031 7.45E-07 6.12770045 -0.416277144 RRS(ph)SDEDAAGEPK ddPTM_HeLa_A485_30min_R1 2 RRSSDEDAAGEPK 13 2 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 RRS(0.775)S(0.225)DEDAAGEPK;RRS(0.5)S(0.5)DEDAAGEPK ; 104.76 0.00031232 2146890000 1916350 1931120 1442660 2318940 2264720 2047640 2970700 3192300 1733630 3000800 TRUE FALSE FALSE 2342635.446 2156947.685 1976359.968 2445617.82 2039236.525 2154851.264 2335985.677 2409383.42 2081553.639 2252755.786 1.039897649 0.957470712 0.877307687 1.085611603 0.905218638 0.956540109 1.036945812 1.069527125 0.924003237 1 21.10325949 -6.751847424 24.96852386 1.013412972 0.967806717 0.068072866 0.065797272 483.3209202 1258120.634 0.024860836 0.018998122 1.77E-07 6.751847424 -0.045606256 RRS(ph)SDEDAAGEPK ddPTM_HeLa_A486_30min_R1 1 RRSSDEDAAGEPK 13 2 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 RRS(0.5)S(0.5)DEDAAGEPK 127.83 1.82E-05 296250000 348080 274620 199960 165830 334200 310410 424280 414970 236530 467230 TRUE FALSE FALSE 323681.3895 252858.1111 277389.8671 386060.6206 292281.5197 272114.7702 318120.6564 320490.3897 257032.6108 350232.5668 0.924189867 0.721972012 0.792016201 1.102297893 0.834535527 0.776954504 0.908312609 0.915078779 0.733891235 1 18.41795372 -11.42597463 2.179397251 2.202740961 0.858203341 0.138253405 0.107348447 22348731.05 1800944.511 132795776.9 0.02795258 3.75E-12 11.42597463 -1.34453762 RRS(ph)SPSARPPDVPGQQPQAAK ddPTM_HeLa_A485_30min_R1 3 RRSSPSARPPDVPGQQPQAAK 21 3 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RRS(0.392)S(0.304)PS(0.304)ARPPDVPGQQPQAAK;RRS(0.333)S(0.333)PS(0.333)ARPPDVPGQQPQAAK;RRS(0.446)S(0.446)PS(0.108)ARPPDVPGQQPQAAK ;; 106.88 0.00062311 1361110000 346120 555410 435400 276316 550040 603580 689180 929980 447320 423580 TRUE FALSE FALSE 423113.1999 620360.3681 596472.5785 291410.4434 495276.0863 635182.5155 541931.0629 701900.9468 537093.0209 317989.3014 1.330589419 1.950884402 1.875763039 0.916415873 1.55752437 1.997496496 1.704243069 2.207309943 1.689028589 1 18.2786187 -6.116093649 9.305785974 1.793543205 1.533090302 0.040511238 0.396827058 0.939223762 69.78019108 0.130062255 0.130143166 7.65E-07 6.116093649 -0.260452903 RRS(ph)SRSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRS(0.76)S(0.232)RS(0.159)S(0.849)PELTR 105.39 0.00033304 365960000 22872 45591 48999 20294 55303 33674 39656 59474 38609 19304 TRUE FALSE FALSE 27959.79749 50922.47086 67125.76912 21402.60983 49796.83914 35437.11857 31183.17164 44887.90825 46357.47216 14491.86806 1.929343917 3.513865199 4.631961099 1.476870321 3.436191864 2.445310599 2.151770324 3.097454935 3.198861041 1 13.82295596 -5.270282215 24.99120135 2.522921111 3.373937625 0.170313575 0.941668182 1211.34702 3423448.956 0.258913216 0.39056226 5.37E-06 5.270282215 0.851016514 RRS(ph)SRSS(ph)PELTR ddPTM_HeLa_A486_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRS(0.599)S(0.307)RS(0.488)S(0.606)PELTR 93.427 0.001059 185560000 988.18 994.86 1514.8 0 1318.5 0 0 0 1011.2 0 TRUE FALSE FALSE 918.913685 916.0236704 2101.371128 0 1153.121435 0 0 0 1098.85163 0 0 RRS(ph)SS(ph)PFLSK ddPTM_HeLa_A485_30min_R1 3 RRSSSPFLSK 10 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.997)S(0.43)S(0.573)PFLSK;RRS(0.999)S(0.003)S(0.993)PFLS(0.006)K;RRS(0.999)S(0.021)S(0.98)PFLSK ;; 158.89 3.51E-06 3894410000 4101990 3582400 3466010 5044240 5452980 4109490 5511000 4801970 4332040 6975700 TRUE FALSE FALSE 5014463.524 4001330.517 4748231.332 5319794.059 4910062.165 4324656.542 4333529.829 3624279.328 5201440.692 5236786.368 0.95754594 0.764081296 0.906707091 1.015850883 0.93760979 0.825822601 0.827517016 0.692080806 0.993250503 1 22.32025032 -6.263817675 24.96233945 0.845975661 0.912890238 0.032043168 0.102582789 561.9200763 5897825.129 0.035337907 0.032608166 5.45E-07 6.263817675 0.066914576 RRS(ph)SS(ph)PFLSK ddPTM_HeLa_A486_30min_R1 2 RRSSSPFLSK 10 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.872)S(0.361)S(0.767)PFLSK;RRS(0.984)S(0.106)S(0.909)PFLS(0.001)K ; 123.63 0.00045865 1772400000 2285220 2203980 1561830 901060 2453040 2257580 2704960 2723110 1988580 2478230 TRUE FALSE FALSE 2125037.879 2029328.598 2166612.403 2097713.217 2145356.85 1979062.733 2028150.398 2103117.298 2160951.716 1857665.077 1.143929498 1.092408219 1.166309487 1.129220354 1.154867406 1.065349592 1.091773981 1.132129426 1.163262281 1 20.82505899 -6.246751858 24.60862338 1.098840576 1.136007941 0.208405734 0.044139516 1313.553224 2200831.537 0.014358244 0.014302982 5.67E-07 6.246751858 0.037167365 RRS(ph)SS(ph)PFLSKR ddPTM_HeLa_A485_30min_R1 1 RRSSSPFLSKR 11 3 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.983)S(0.3)S(0.716)PFLS(0.001)KR 78.902 0.004622 712210000 268690 370530 238850 279040 432850 476720 611170 904700 281730 366600 TRUE FALSE FALSE 328459.1635 413860.2603 327210.5544 294283.2486 389753.9342 501680.3221 480588.5367 682820.9065 338270.6268 275213.3668 1.193470969 1.50377965 1.188934092 1.069291263 1.416188242 1.822877747 1.746239808 2.481060112 1.229121357 1 18.07019102 -6.107626785 4.084953963 1.75223579 1.252533277 0.18591381 0.385113448 0.315744005 9.102116676 0.125421099 0.127021142 7.81E-07 6.107626785 -0.499702513 RRS(ph)VSQDLIK ddPTM_HeLa_A485_30min_R1 2 RRSVSQDLIK 10 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 RRS(0.587)VS(0.413)QDLIK;RRS(0.859)VS(0.141)QDLIK ; 90.759 0.0022197 900610000 947140 1346540 1000540 979590 1715160 1557190 2109080 2779900 1192000 1496480 TRUE FALSE FALSE 1157828.025 1504006.14 1370681.382 1033102.521 1544392.648 1638722.061 1658457.828 2098125.166 1431223.466 1123435.077 1.030614096 1.338756614 1.220080635 0.919592545 1.37470574 1.458670905 1.476238247 1.867598057 1.273970785 1 20.09948532 -5.962780376 10.38259891 1.467094344 1.148458475 0.251583961 0.22883307 0.580536128 157.6923968 0.06930333 0.078494762 1.09E-06 5.962780376 -0.318635869 RRS(ph)VSQDLIK ddPTM_HeLa_A486_30min_R1 1 RRSVSQDLIK 10 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 RRS(0.512)VS(0.488)QDLIK 92.265 0.0020542 217600000 282050 221880 180430 106700 300660 240100 324910 345780 172720 290830 TRUE FALSE FALSE 262279.7515 204297.4207 250297.3281 248402.9923 262948.4193 210478.9032 243614.0815 267053.4423 187691.5087 218004.275 1.203094533 0.937125755 1.148130366 1.139440923 1.206161756 0.965480623 1.117473873 1.224991768 0.86095334 1 17.7339969 -7.77009673 24.99963695 0.930476649 1.111317073 0.37289064 0.096851728 222.1314494 641419.8401 0.085612934 0.023484731 1.70E-08 7.77009673 0.180840424 RRS(ph)YS(ph)REHEGR ddPTM_HeLa_A485_30min_R1 1 RRSYSREHEGR 11 3 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 RRS(0.933)Y(0.3)S(0.766)REHEGR 53.168 0.025543 67058000 4112.4 7548.3 10195 5109 14076 8178.9 10587 17615 9662.2 8852.3 TRUE FALSE FALSE 5027.189192 8431.008024 13966.55475 5388.091733 12674.54402 8607.134557 8325.000962 13294.89363 11601.31491 6645.584525 0.756470582 1.268663124 2.101629239 0.8107777 1.907212822 1.295165914 1.252711621 2.00056046 1.745717757 1 12.69818038 -4.374514293 3.901228299 1.529474756 0.755676165 0.235690012 0.409971063 0.307685715 7.401542557 0.09859769 0.515692467 4.22E-05 4.374514293 -0.773798592 RRS(ph)YS(ph)REHEGR ddPTM_HeLa_A486_30min_R1 1 RRSYSREHEGR 11 3 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 RRS(0.967)Y(0.208)S(0.825)REHEGR 68.944 0.0083785 129850000 13187 12946 26672 12983 32789 20344 24335 24324 16518 15117 TRUE FALSE FALSE 12262.6594 11920.11181 37000.1127 30225.08012 28676.29787 17834.16412 18246.12561 18785.95619 17949.79354 11331.6048 1.082164407 1.05193501 3.265213828 2.667325648 2.530647545 1.573842755 1.610197843 1.657837218 1.584046907 1 13.46806457 -6.36084447 7.706666456 1.529705532 2.153414914 0.186942009 0.656557267 0.587100751 40.47108631 0.256098579 0.225496897 4.36E-07 6.36084447 0.623709381 RRSPS(ph)LSS(ph)K ddPTM_HeLa_A486_30min_R1 1 RRSPSLSSK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(0.304)PS(0.742)LS(0.02)S(0.933)K 106.93 0.027301 888010000 2183800 2047100 1299300 937880 2132700 2145100 2650000 2543700 1573100 2866200 TRUE FALSE FALSE 2030726.897 1884880.341 1802423.756 2183432.038 1865196.879 1880459.372 1986941.971 1964555.039 1709457.575 2148484.864 0.945190227 0.877306781 0.838927835 1.016265962 0.868145227 0.875249067 0.924810784 0.914390914 0.795657257 1 21.03488818 RRSPS(ph)PY(ph)YSR ddPTM_HeLa_A485_30min_R1 1 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.499)PS(0.506)PY(0.539)Y(0.302)S(0.154)R 66.674 0.01642 4786700000 942290 1579600 1293600 982290 1690600 1534500 1728700 1805200 1425200 1227600 TRUE FALSE FALSE 1151899.16 1764320.479 1772156.471 1035950.015 1522277.928 1614844.047 1359349.123 1362471.87 1711224.567 921581.9123 1.249915113 1.914447816 1.922950578 1.12409977 1.651809685 1.752252324 1.475017147 1.47840561 1.856833934 1 19.81375288 -10.30150514 4.932911234 0.999782883 1.605769966 0.32653854 0.259702184 0.000610353 8.64E-05 0.247495219 0.060005273 4.99E-11 10.30150514 0.605987084 RRSPS(ph)PY(ph)YSR ddPTM_HeLa_A486_30min_R1 3 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.027)PS(0.993)PY(0.926)Y(0.027)S(0.027)R;RRS(0.23)PS(0.843)PY(0.422)Y(0.281)S(0.225)R;RRS(0.373)PS(0.974)PY(0.473)Y(0.034)S(0.146)R ;; 123.68 0.00011299 1.45E+11 3154790 3705830 3378530 1150257 4086940 3087590 3440450 3597590 3026990 3361750 TRUE FALSE FALSE 2933655.512 3412166.534 4686787.296 2677856.427 3574317.876 2706674.538 2579613.021 2778497.292 3289371.93 2519945.919 1.164173997 1.354063398 1.859876143 1.062664245 1.41841055 1.074100249 1.02367793 1.102601953 1.305334335 1 21.26496134 -5.967526828 1.555211647 1.105822865 1.416907233 0.268418128 0.213184882 0.519520425 2.574213968 0.084612298 0.096652926 1.08E-06 5.967526828 0.311084369 RRSPS(ph)PYYS(ph)R ddPTM_HeLa_A485_30min_R1 1 RRSPSPYYSR 10 2 P62995;P62995-3;H7BXF3;Q13595;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RRS(0.277)PS(0.829)PY(0.283)Y(0.096)S(0.515)R 112.24 0.0023506 32310000000 2020700 2848000 2998300 2129500 3001300 2946200 3019900 3499200 2381600 2477400 TRUE FALSE FALSE 2470197.744 3181048.826 4107495.94 2245829.193 2702480.034 3100458.476 2374673.695 2641015.713 2859565.275 1859829.773 1.328184858 1.710397839 2.208533275 1.207545564 1.45307924 1.667065729 1.276823142 1.420030882 1.537541401 1 20.82673915 -11.78775598 0.138468943 9.38E-07 1.797235425 0.28878906 0.266074126 85.94487805 1.335942665 27.85765326 2.003591756 1.63E-12 11.78775598 1.797234487 RRSQFFEQGS(ph)SDSVVPDLPVPTISAPSR ddPTM_HeLa_A486_30min_R1 1 RRSQFFEQGSSDSVVPDLPVPTISAPSR 28 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RRS(0.045)QFFEQGS(0.464)S(0.464)DS(0.027)VVPDLPVPTISAPSR 90.323 0.0018064 262990000 98585 91392 99533 37205 121110 84544 105430 94451 69399 75082 TRUE FALSE FALSE 91674.70059 84149.76508 138074.8432 86615.12024 105919.2545 74113.82086 79050.29888 72946.56915 75414.5612 56280.9785 1.628875386 1.495172389 2.453312769 1.538976801 1.881972512 1.316853808 1.404565112 1.296114089 1.339965353 1 15.78035979 -6.268667264 23.04865861 1.298323292 1.804577318 0.488489615 0.269510737 179.1101322 571152.5739 0.092965049 0.083858964 5.39E-07 6.268667264 0.506254026 RRSQFFEQGSSDS(ph)VVPDLPVPTISAPSR ddPTM_HeLa_A486_30min_R1 1 RRSQFFEQGSSDSVVPDLPVPTISAPSR 28 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 RRS(0.23)QFFEQGS(0.23)S(0.23)DS(0.31)VVPDLPVPTISAPSR 99.614 0.00051555 539570000 174310 192650 152300 50462 243730 162960 176570 219040 149040 137340 TRUE FALSE FALSE 162091.7691 177383.7124 211274.6387 117478.0862 213159.1107 142855.6521 132390.3184 169169.3736 161958.9072 102949.1701 1.574483495 1.723022267 2.052222845 1.141127084 2.070527723 1.387632867 1.28597752 1.643232029 1.573192937 1 16.65157267 -11.71980336 0.168145734 2.76E-09 1.798389896 0.321702703 0.276663711 64.38962599 1.230494166 24.96269424 1.133622822 1.91E-12 11.71980336 1.798389893 RRSQKEEDEQEDLT(ph)K ddPTM_HeLa_A486_30min_R1 1 RRSQKEEDEQEDLTK 15 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 RRSQKEEDEQEDLT(1)K 48.314 0.022787 56626000 67318 83330 83589 3588.7 113950 43893 27885 45486 72498 5980 TRUE FALSE FALSE 62599.35583 76726.62732 115956.8994 8354.674963 99657.32846 38477.92793 20907.87806 35129.83075 78782.18501 4482.569077 13.96506217 17.11666368 25.86840212 1.863813991 22.23219024 8.583900721 4.664262325 7.836985923 17.57523056 1 12.1301101 -5.9886573 0.910237068 8.031040683 17.55217928 0.214808337 7.224169817 0.946002583 1.713518847 3.874163467 4.787375552 1.03E-06 5.9886573 9.521138602 RRSS(ph)DEDAAGEPK ddPTM_HeLa_A485_30min_R1 2 RRSSDEDAAGEPK 13 2 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 RRS(0.409)S(0.591)DEDAAGEPK;RRS(0.418)S(0.582)DEDAAGEPK ; 85.636 0.0014951 460590000 480430 456860 364670 623910 592180 540100 752050 763150 417400 712690 TRUE FALSE FALSE 587299.996 510285.8028 499576.6082 657992.6235 533220.4799 568378.8008 591368.3738 575986.2659 501168.3514 535029.4991 1.097696477 0.95375265 0.933736568 1.229824943 0.996618842 1.062331707 1.105300502 1.076550483 0.936711625 1 19.02925891 RRSS(ph)DEDAAGEPK ddPTM_HeLa_A486_30min_R1 2 RRSSDEDAAGEPK 13 2 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 RRS(0.386)S(0.614)DEDAAGEPK;RRS(0.372)S(0.628)DEDAAGEPK ; 129.11 1.65E-05 1151270000 1351560 1184230 773440 636750 1198170 1321330 1650820 1541580 960920 1840680 TRUE FALSE FALSE 1256822.623 1090387.302 1072936.681 1482386.18 1047884.346 1158317.739 1237767.375 1190595.886 1044213.319 1379761.747 0.910898295 0.790272164 0.777624603 1.074378372 0.759467602 0.839505618 0.89708776 0.862899619 0.756806979 1 20.39598774 -10.35293543 4.034026252 1.000359884 0.853178199 0.193121952 0.090667097 122304279.8 219.6812517 409176.268 0.021347238 4.44E-11 10.35293543 -0.147181685 RRSS(ph)RS(ph)SPELTR ddPTM_HeLa_A485_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRS(0.379)S(0.621)RS(0.621)S(0.379)PELTR 94.569 0.00098525 467450000 29333 65279 53673 17899 74364 68629 59255 87461 51092 33632 TRUE FALSE FALSE 35858.02465 72912.8112 73528.87622 18876.77705 66960.05905 72222.30832 46594.68518 66011.05262 61345.69576 25248.16135 1.420223206 2.887846374 2.912246765 0.747649573 2.652076645 2.860497733 1.845468449 2.614489495 2.429709431 1 14.62389071 -10.37235138 5.970135815 0.999770296 2.283261707 0.2353243 0.682358594 0.002048078 0.000215317 0.648602277 0.157282589 4.24E-11 10.37235138 1.283491411 RRSS(ph)RSS(ph)PELTR ddPTM_HeLa_A486_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRS(0.404)S(0.491)RS(0.322)S(0.782)PELTR 68.329 0.0078076 298680000 24411 25683 27274 10836 44334 22210 25413 31841 29466 22311 TRUE FALSE FALSE 22699.91496 23647.78554 37835.22322 25226.75562 38773.21632 19469.95601 19054.39861 24591.49938 32020.1366 16724.18038 1.357311058 1.413987712 2.262306574 1.508400116 2.318392617 1.164179982 1.139332283 1.470415819 1.914601247 1 14.02964789 -6.310083123 24.99975446 1.354708496 1.764773243 0.24552723 0.380027881 628.8942016 323209.2367 0.135063794 0.119115247 4.90E-07 6.310083123 0.410064748 RRSS(ph)S(ph)PFLSK ddPTM_HeLa_A486_30min_R1 1 RRSSSPFLSK 10 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RRS(0.534)S(0.846)S(0.619)PFLS(0.001)K 96.414 0.008271 594670000 925390 1058400 866400 334850 1190600 1056000 1163200 1132900 900610 951010 TRUE FALSE FALSE 860524.9397 974528.5294 1201893.283 779547.7224 1041263.846 925721.4566 872155.0569 874963.401 978675.5999 712870.906 1.207125908 1.367047696 1.68599009 1.093532806 1.460662565 1.298582182 1.223440387 1.227379872 1.372865117 1 19.44328132 -13.21654765 0.180786317 5.78E-09 1.402334134 0.292382628 0.154331029 121.7729438 1.516670329 44.35047646 0.482339354 6.07E-14 13.21654765 1.402334128 RRSSPS(ph)ARPPDVPGQQPQAAK ddPTM_HeLa_A486_30min_R1 1 RRSSPSARPPDVPGQQPQAAK 21 3 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RRS(0.087)S(0.299)PS(0.615)ARPPDVPGQQPQAAK 99.423 0.0027372 186600000 158240 144490 90348 62847 161250 127340 170870 172960 111890 176110 TRUE FALSE FALSE 147148.1932 133040.0862 125333.1652 146310.9921 141024.5214 111630.0855 128116.5187 133580.7837 121588.7153 132010.9097 1.114666913 1.007796147 0.949415207 1.108325005 1.068279294 0.845612577 0.970499476 1.011892002 0.921050507 1 17.01029764 -6.211944142 24.99900568 0.951846946 1.045054695 0.392358586 0.061991703 439.6742634 222070.1598 0.020899226 0.020899191 6.14E-07 6.211944142 0.093207748 RRSSRS(ph)S(ph)PELTR ddPTM_HeLa_A486_30min_R1 1 RRSSRSSPELTR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RRS(0.311)S(0.366)RS(0.474)S(0.849)PELTR 71.98 0.0065067 202150000 23163 27840 47461 9568.6 54198 19986 27106 27994 30441 21021 TRUE FALSE FALSE 21539.39331 25633.85701 65839.17025 22276.18437 47399.98146 17520.33052 20323.7921 21620.3773 33079.65039 15757.20478 1.36695522 1.626802302 4.178353406 1.413714214 3.008146568 1.111893307 1.28980948 1.372094709 2.09933493 1 13.94372401 -6.277077857 24.79003181 1.392581312 2.333376978 0.244406607 0.829556464 1121.323623 1777510.727 0.290396287 0.256982874 5.28E-07 6.277077857 0.940795667 RRSSSS(ph)S(ph)S(ph)S(ph)SSASR ddPTM_HeLa_A485_30min_R1 1 RRSSSSSSSSSASR 14 2 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 4 0 RRS(0.343)S(0.386)S(0.419)S(0.439)S(0.441)S(0.971)S(0.387)S(0.331)S(0.283)AS(0.001)R 52.265 0.018867 445420000 0 0 0 0 4946.9 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 4454.369266 0 0 0 0 0 0 RRSSSS(ph)S(ph)S(ph)S(ph)SSASR ddPTM_HeLa_A486_30min_R1 1 RRSSSSSSSSSASR 14 2 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 4 0 RRS(0.347)S(0.388)S(0.42)S(0.438)S(0.438)S(0.966)S(0.384)S(0.33)S(0.285)AS(0.002)R 46.481 0.024947 123980000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RRSVS(ph)QDLIK ddPTM_HeLa_A485_30min_R1 1 RRSVSQDLIK 10 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 RRS(0.459)VS(0.541)QDLIK 78.486 0.0060928 367450000 322290 393740 303340 263670 496000 438660 512530 672560 340850 408250 TRUE FALSE FALSE 393982.2986 439784.4679 415558.089 278073.6245 446616.4984 461627.5593 403023.7785 507613.6055 409255.4685 306480.7883 1.285504063 1.434949546 1.355902572 0.907311763 1.457241418 1.506220217 1.315005031 1.656265661 1.335338084 1 18.22543712 RRT(ph)AS(ph)PPPPPK ddPTM_HeLa_A485_30min_R1 1 RRTASPPPPPK 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRT(1)AS(1)PPPPPK 58.071 0.027719 1898100000 1420400 1510500 1390500 1965400 2205300 1733300 2220000 2290400 1883600 2674300 TRUE FALSE FALSE 1736363.08 1687139.835 1904903.814 2072764.825 1985732.589 1824052.908 1745678.864 1728675.809 2261621.243 2007646.227 0.864875025 0.840357137 0.948824443 1.032435295 0.989084911 0.908552953 0.869515177 0.861046028 1.126503869 1 20.93707364 -4.795288435 6.608710014 0.959977368 0.852436901 0.267185365 0.075121966 0.235344309 30.58278218 0.020339387 0.044556948 1.60E-05 4.795288435 -0.107540467 RRT(ph)AS(ph)PPPPPKR ddPTM_HeLa_A485_30min_R1 1 RRTASPPPPPKR 12 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRT(1)AS(1)PPPPPKR 86.378 0.017861 667450000 359510 387430 340590 395270 503830 429480 510470 540470 422290 555740 TRUE FALSE FALSE 439481.7592 432736.5683 466588.4141 416862.5992 453666.9161 451966.9087 401403.9143 407918.8851 507039.7295 417204.2456 1.05339714 1.037229541 1.118369286 0.999181105 1.08739765 1.083322889 0.962128067 0.977743849 1.215327348 1 18.67039431 RRT(ph)AS(ph)PPPPPKR ddPTM_HeLa_A486_30min_R1 2 RRTASPPPPPKR 12 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRT(1)AS(1)PPPPPKR;RRT(1)AS(1)PPPPPKR ; 86.548 0.017732 2984000000 539280 536200 419650 211764 589770 518840 615400 620030 423340 567370 TRUE FALSE FALSE 501479.2568 493709.5592 582149.7186 492997.294 515795.5472 454830.796 461420.411 478862.7042 460035.4521 425296.859 1.179127582 1.160858701 1.368807943 1.159183952 1.212789458 1.069443111 1.084937265 1.125949308 1.081680813 1 18.69811067 -6.256422966 21.82672583 1.081057363 1.218397462 0.563243243 0.063047404 58.82336547 255943.6906 0.021197221 0.02050532 5.54E-07 6.256422966 0.137340098 RRT(ph)CETGEPMEAESGDTSSEGPAQVYLPGR ddPTM_HeLa_A485_30min_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 RRT(0.497)CET(0.497)GEPMEAES(0.002)GDT(0.002)SSEGPAQVYLPGR 96.338 0.000488 569120000 162870 167400 203480 188470 265130 182160 223090 179500 191200 243430 TRUE FALSE FALSE 199099.8696 186975.9738 278755.7195 198765.6389 238732.7263 191697.6159 175424.999 135477.3436 229572.0862 182747.381 1.089481384 1.023139006 1.525360954 1.087652462 1.306353749 1.048975996 0.959931672 0.741336717 1.256226409 1 17.47949121 -6.465056442 4.742427484 0.971182166 1.206776037 0.256415148 0.175625425 0.283056841 13.17842594 0.063446552 0.054173734 3.43E-07 6.465056442 0.235593871 RRT(ph)CETGEPMEAESGDTSSEGPAQVYLPGR ddPTM_HeLa_A486_30min_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 RRT(0.381)CET(0.381)GEPMEAES(0.064)GDT(0.054)S(0.054)S(0.064)EGPAQVYLPGR 87.489 0.00081964 461340000 86239 131460 120920 47606 164700 130510 156480 147900 113060 125520 TRUE FALSE FALSE 80194.09144 121042.6308 167743.4623 110829.1739 144041.7902 114409.0031 117327.0489 114226.3986 122860.1318 94088.975 0.852321873 1.286469864 1.782817406 1.177918814 1.530910399 1.215966091 1.246979775 1.214025327 1.305786696 1 16.52173806 -6.459340749 24.98823764 1.21266566 1.344269959 0.065641077 0.235640087 662.1723713 260418.5485 0.083875618 0.073971248 3.47E-07 6.459340749 0.131604299 RRT(ph)EEGPTLSYGR ddPTM_HeLa_A485_30min_R1 3 RRTEEGPTLSYGR 13 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RRT(0.998)EEGPT(0.001)LSYGR;RRT(0.996)EEGPT(0.004)LSYGR;RRT(1)EEGPTLSYGR ;; 177.79 1.72E-12 1044310000 98284 139699 168078 136532 189153 138548 148645 171265 144713 150153 TRUE FALSE FALSE 120146.9367 156035.5828 230257.0465 143990.3974 170320.2632 145802.159 116885.7814 129261.9902 173755.5717 112722.6205 1.065863588 1.38424375 2.042687134 1.277386889 1.510967918 1.293459631 1.036932791 1.146726271 1.541443687 1 16.78241753 -6.425980641 4.170523316 1.189909532 1.473775814 0.186846578 0.269104406 0.408774259 12.45032735 0.101636722 0.087461107 3.75E-07 6.425980641 0.283866282 RRT(ph)FS(ph)LTEVR ddPTM_HeLa_A486_30min_R1 2 RRTFSLTEVR 10 2 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 2 0 RRT(1)FS(0.5)LT(0.5)EVR;RRT(0.995)FS(0.592)LT(0.413)EVR ; 87.566 0.0029798 420910000 360680 409770 341500 163748 450290 357990 421790 426290 347920 353620 TRUE FALSE FALSE 335398.1946 377298.3328 473737.9457 381213.6194 393810.4294 313824.8336 316253.6808 329233.0728 378077.9857 265071.2503 1.265313361 1.42338459 1.787209836 1.438155284 1.485677639 1.183926334 1.193089331 1.242055004 1.426325885 1 18.01602068 -6.255138129 23.41567438 1.223208369 1.491554026 0.430932096 0.15492397 218.9687654 813695.4867 0.052821671 0.051487154 5.56E-07 6.255138129 0.268345657 RRT(ph)FSLTEVR ddPTM_HeLa_A485_30min_R1 2 RRTFSLTEVR 10 2 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 RRT(1)FSLTEVR;RRT(1)FSLTEVR ; 214.47 3.01E-14 1490560000 722450 1003650 985120 694100 1297070 1051200 1245620 1464350 903440 933100 TRUE FALSE FALSE 883156.5101 1121018.137 1349556.882 732016.9254 1167929.157 1106239.207 979483.1112 1105215.866 1084752.121 700495.3424 1.260760003 1.600322042 1.926575097 1.04499899 1.667290395 1.579224214 1.398272125 1.577763333 1.548550084 1 19.41801593 -10.07360969 4.949456574 0.99998654 1.517815149 0.316214818 0.225492224 3.22E-05 6.03E-06 0.210190715 0.050977413 8.44E-11 10.07360969 0.517828608 RRT(ph)FSLTEVR ddPTM_HeLa_A486_30min_R1 4 RRTFSLTEVR 10 2 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 RRT(1)FSLTEVR;RRT(1)FSLTEVR;RRT(0.995)FS(0.005)LTEVR;RRT(0.836)FS(0.158)LT(0.006)EVR ;;; 193.06 1.83E-09 2013870000 1127520 1178400 1210980 462566 1602620 1090720 1362450 1459430 987090 1101980 TRUE FALSE FALSE 1048486.671 1085019.292 1679903.887 1076877.025 1401604.456 956158.056 1021550.599 1127149.648 1072651.756 826037.0353 1.269297411 1.313523784 2.033690761 1.303666759 1.696781616 1.157524439 1.236688618 1.364526771 1.298551651 1 19.65584694 -6.272619055 24.92557489 1.235818106 1.527875686 0.311979061 0.230152016 972.0522033 2167226.745 0.080593279 0.071717409 5.34E-07 6.272619055 0.29205758 RRT(ph)IHTFPCLK ddPTM_HeLa_A485_30min_R1 2 RRTIHTFPCLK 11 2 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 RRT(0.821)IHT(0.179)FPCLK;RRT(0.873)IHT(0.127)FPCLK ; 112.96 0.00044091 4627000000 3177800 3307900 2738200 2789900 3715100 3636200 4870500 5158600 2871000 3805800 TRUE FALSE FALSE 3884690.647 3694730.13 3751174.126 2942305.173 3345211.599 3826585.809 3829877.887 3893445.262 3447183.366 2857084.101 1.359669688 1.29318214 1.312937944 1.029827989 1.170848138 1.339332576 1.340484827 1.362733866 1.20653899 1 21.44611207 -11.42939389 1.215593421 0.110049393 1.267539436 0.392564067 0.100157857 38696.25685 3448.323897 93360.91794 0.031552256 3.72E-12 11.42939389 1.157490043 RRT(ph)IHTFPCLK ddPTM_HeLa_A486_30min_R1 1 RRTIHTFPCLK 11 2 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 RRT(0.984)IHT(0.016)FPCLK 109.83 0.00055768 2836400000 2481200 2565700 2202000 1022800 3085700 2989500 3384000 3241300 2124600 3046500 TRUE FALSE FALSE 2307280.693 2362384.588 3054673.372 2381130.089 2698662.733 2620685.885 2537287.408 2503326.747 2308762.039 2283636.571 1.010353715 1.034483603 1.337635511 1.042692222 1.181739147 1.147593237 1.111073207 1.0962019 1.011002393 1 21.12290164 -7.687301831 2.173243862 0.996214949 1.128642999 0.217840771 0.088002488 0.473354778 4.138544555 0.080627602 0.023930673 2.05E-08 7.687301831 0.13242805 RRT(ph)LLEQLDDDQ ddPTM_HeLa_A486_30min_R1 1 RRTLLEQLDDDQ 12 2 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 RRT(1)LLEQLDDDQ 152.94 4.54E-07 24422000 38392 44158 40704 14471 52908 39833 43270 46495 37227 43979 TRUE FALSE FALSE 35700.91906 40658.75926 56465.67889 33689.21932 46271.78529 34918.80945 32443.38834 35909.10348 40453.86633 32966.37214 1.082949586 1.23334042 1.712826593 1.021926804 1.403605622 1.059225119 0.98413584 1.08926464 1.22712521 1 15.00870751 -6.277652329 24.10244226 1.072040776 1.296224492 0.256437092 0.186332253 743.2092507 1104863.383 0.065415203 0.05788597 5.28E-07 6.277652329 0.224183716 RRT(ph)NS(ph)SSSSPVVLK ddPTM_HeLa_A485_30min_R1 1 RRTNSSSSSPVVLK 14 2 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 2 0 RRT(0.752)NS(0.793)S(0.313)S(0.101)S(0.031)S(0.009)PVVLK 49.463 0.0088031 0 186210 209090 163570 273760 239750 234150 306810 348760 218730 368750 TRUE FALSE FALSE 227631.7721 233541.2567 224081.3497 288714.8156 215879.6482 246409.7319 241257.5371 263226.0632 262627.1047 276827.4113 0.822287688 0.843634868 0.809462288 1.042941572 0.779834797 0.890120421 0.871508843 0.950867047 0.948703394 1 18.07862728 -1 0.043026243 1.298595463 0.204545654 0.335864012 0.06719666 791.7286537 2.593360706 17.2682556 61.16328335 0.1 1 -1.094049809 RRT(ph)PS(ph)PPPR ddPTM_HeLa_A485_30min_R1 3 RRTPSPPPR 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRT(1)PS(1)PPPR;RRT(1)PS(1)PPPR;RRT(1)PS(1)PPPR ;; 70.412 0.012027 18443600000 317855 502087 568739 320962 555500 476908 490914 545302 464535 420787 TRUE FALSE FALSE 388560.7482 560801.7071 779139.2233 338495.3413 500192.4695 501878.1654 386026.2135 411565.8295 557762.9135 315892.5449 1.230040893 1.775292631 2.466469171 1.071552168 1.583426002 1.588762298 1.222017486 1.302866548 1.765672924 1 18.26907436 -5.29674016 24.98372182 1.387498574 1.819071128 0.258122335 0.356991927 842.6266879 596357.604 0.100199234 0.148625858 5.05E-06 5.29674016 0.431572554 RRT(ph)PS(ph)PPPR ddPTM_HeLa_A486_30min_R1 4 RRTPSPPPR 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRT(1)PS(1)PPPR;RRT(1)PS(1)PPPR;RRT(1)PS(1)PPPR;RRT(1)PS(1)PPPR ;;; 70.806 0.01181 40276200000 3507550 3817170 3809790 1321014 4587440 3397090 3949350 4072050 3327690 3894080 TRUE FALSE FALSE 3261688.858 3514683.547 5285042.718 3075387.352 4012040.499 2977991.575 2961180.858 3144933.107 3616136.849 2918977.022 1.117408199 1.204080581 1.810580446 1.053583954 1.374467997 1.020217546 1.014458434 1.07740934 1.238837038 1 21.47703142 -6.261969257 24.99488845 1.071539673 1.319367143 0.263417214 0.202009592 69.53606456 3280029.682 0.069517189 0.065059499 5.47E-07 6.261969257 0.24782747 RRT(ph)SDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK ddPTM_HeLa_A485_30min_R1 1 RRTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 36 2 H7C3A2;Q8NHH9-2;Q8NHH9 H7C3A2 ATL2 Atlastin-2 1 0 RRT(0.123)S(0.123)DPS(0.123)AAVNHVS(0.123)S(0.123)T(0.123)T(0.123)S(0.123)LGENY(0.013)EDDDLVNSDEVMK 41.27 0.037799 60741000 20258 27719 22917 11079 37151 20921 25137 27892 24644 24259 TRUE FALSE FALSE 24764.32221 30960.49593 31394.95196 11684.21772 33452.11599 22016.39121 19766.2746 21051.44327 29589.82475 18211.67775 1.359804547 1.700035348 1.723891252 0.641578325 1.836849765 1.208916142 1.085362637 1.155931021 1.624772036 1 14.15257622 -1 0.121364008 0.99254832 2.790079719 0.102541834 0.344739973 214.3309914 1.788178817 2.288016907 65.2402142 0.1 1 1.797531398 RRT(ph)SFYLPK ddPTM_HeLa_A485_30min_R1 2 RRTSFYLPK 9 2 Q9NS23-3;Q9NS23-4;Q9NS23-2;Q9NS23-5;Q9NS23 Q9NS23-3 RASSF1 Ras association domain-containing protein 1 1 0 RRT(0.983)S(0.017)FYLPK;RRT(0.949)S(0.051)FYLPK ; 114.02 0.0036651 2248800000 1467050 1826690 1408750 1406230 2078130 1765330 2322200 2774700 1632010 1898790 TRUE FALSE FALSE 1793390.211 2040305.505 1929905.248 1483048.784 1871224.08 1857759.949 1826042.999 2094200.474 1959539.437 1425456.598 1.258116322 1.43133471 1.353885661 1.040402624 1.312719085 1.303273598 1.281023219 1.469143626 1.374674922 1 20.44299268 -5.058160055 24.99860106 1.273236934 1.35670124 0.073900417 0.139767716 771.0409137 331410.8342 0.038262968 0.066273686 8.75E-06 5.058160055 0.083464306 RRT(ph)SFYLPK ddPTM_HeLa_A486_30min_R1 2 RRTSFYLPK 9 2 Q9NS23-3;Q9NS23-4;Q9NS23-2;Q9NS23-5;Q9NS23 Q9NS23-3 RASSF1 Ras association domain-containing protein 1 1 0 RRT(0.981)S(0.019)FYLPK;RRT(0.782)S(0.218)FYLPK ; 113.52 0.0037814 1853380000 1791000 1500560 1039970 656690 1505110 1598430 1920310 1984770 1231170 2010390 TRUE FALSE FALSE 1665460.149 1381650.161 1442674.235 1528807.507 1316325.069 1401231.958 1439828.127 1532881.198 1337888.807 1506975.259 1.105167546 0.916836659 0.957331069 1.014487463 0.873488176 0.929830765 0.955442446 1.017190687 0.88779746 1 20.5232243 -4.253726883 24.59089904 0.950155774 1.105167641 0.489890254 0.047419277 644.2150116 2053984.984 0.011483862 0.118927558 5.58E-05 4.253726883 0.155011867 RRT(ph)TDFSDFLSIVGCTK ddPTM_HeLa_A485_30min_R1 2 RRTTDFSDFLSIVGCTK 17 2 E9PIZ4;E9PSD5;E9PPQ5;Q9UHD1 E9PIZ4 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 1 0 RRT(0.325)T(0.325)DFS(0.325)DFLS(0.025)IVGCTK;RRT(0.333)T(0.333)DFS(0.333)DFLS(0.001)IVGCTK ; 153.74 3.05E-08 486060000 460340 489550 339790 337970 472920 477520 616720 691380 348380 436580 TRUE FALSE FALSE 562741.0448 546798.614 465492.4608 356432.4453 425834.4243 502522.2088 484952.7339 521817.971 418296.6705 327748.6407 1.716989714 1.668347466 1.420272743 1.087517692 1.299271367 1.533254899 1.479648345 1.592128559 1.276272785 1 18.32223027 -12.38425214 0.229666909 1.70E-18 1.508992545 0.387206764 0.177902258 88.94995992 1.733757279 43.08257011 0.364514098 4.13E-13 12.38425214 1.508992545 RRT(ph)TDFSDFLSIVGCTK ddPTM_HeLa_A486_30min_R1 2 RRTTDFSDFLSIVGCTK 17 2 E9PIZ4;E9PSD5;E9PPQ5;Q9UHD1 E9PIZ4 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 1 0 RRT(0.494)T(0.494)DFS(0.013)DFLSIVGCTK;RRT(0.696)T(0.29)DFS(0.014)DFLSIVGCTK ; 209.24 1.01E-24 486370000 784640 666000 501630 349567 706920 637200 870890 763440 535590 682370 TRUE FALSE FALSE 729640.7879 613223.7345 695874.5701 813809.6421 618251.5018 558588.7426 652984.1107 589621.3778 582015.3724 511500.1105 1.426472395 1.198873122 1.360458299 1.59102535 1.208702577 1.092059867 1.276606001 1.152729717 1.13785972 1 18.96437503 -5.981167357 24.94826163 1.150436869 1.380596753 0.554731955 0.110424192 201.1928856 266525.9081 0.03467331 0.03931028 1.04E-06 5.981167357 0.230159884 RRTCET(ph)GEPMEAESGDTSSEGPAQVYLPGR ddPTM_HeLa_A485_30min_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 RRT(0.303)CET(0.697)GEPMEAESGDTSSEGPAQVYLPGR 142.4 2.62E-09 448580000 176990 193690 208440 184880 264130 194400 231750 208910 203100 246560 TRUE FALSE FALSE 216360.8149 216340.3606 285550.6299 194979.5263 237832.2898 204578.4834 182234.7193 157674.4949 243860.3071 185097.1296 1.168904215 1.168793709 1.542706959 1.053390329 1.284905338 1.105249357 0.984535631 0.851847326 1.317472116 1 17.497923 -6.441881925 3.741864308 1.027018605 1.245222648 0.269204635 0.16021286 0.313689008 8.291524103 0.059107185 0.050157195 3.62E-07 6.441881925 0.218204043 RRTCET(ph)GEPMEAESGDTSSEGPAQVYLPGR ddPTM_HeLa_A486_30min_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 RRT(0.116)CET(0.846)GEPMEAES(0.016)GDT(0.016)S(0.002)S(0.003)EGPAQVYLPGR 148.72 1.68E-09 612810000 48695 78810 71039 28650 100620 75597 87161 85017 71045 79413 TRUE FALSE FALSE 45281.73196 72564.80858 98547.20329 66698.64789 87999.30136 66270.61075 65352.3959 65660.48501 77203.2378 59527.46791 0.760686345 1.219013862 1.655491267 1.12046842 1.478297405 1.113277838 1.097852776 1.103028355 1.296934684 1 15.86126791 RRTIHT(ph)FPCLK ddPTM_HeLa_A486_30min_R1 1 RRTIHTFPCLK 11 2 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 RRT(0.134)IHT(0.866)FPCLK 89.548 0.0028021 1999400000 1238400 1203000 1008500 532430 1526400 1330900 1572800 1437200 1040300 1506800 TRUE FALSE FALSE 1151594.555 1107669.899 1399018.209 1239523.948 1334944.679 1166707.09 1179268.805 1109980.934 1130474.042 1129487.472 1.019572667 0.980683652 1.23863101 1.097421599 1.181903041 1.032952661 1.044074267 0.982729743 1.000873466 1 20.10723684 -6.62158603 2.529483562 1.00196945 1.103686392 0.29279452 0.070410735 0.39053267 5.073928527 0.032358586 0.023730031 2.39E-07 6.62158603 0.101716942 RRVEHHDHAVVSGR ddPTM_HeLa_A485_30min_R1 5 RRVEHHDHAVVSGR 14 2 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 0 0 ;;;; ;;;; 94.09 0.00088771 168424000 142914 177675 45990.2 51848.9 29216.2 16620.2 6258.9 111243 20403.2 104145 FALSE FALSE TRUE 174704.7263 198452.5457 63003.88879 54681.27412 26307.33254 17490.40797 4921.634884 83960.47983 24497.93509 78183.56815 2.234545319 2.538289699 0.805845656 0.699395991 0.336481606 0.223709513 0.062949735 1.073889077 0.313338668 1 16.25457781 -4.822094289 4.455541192 0.511860172 2.400609199 0.839606547 0.319535391 0.06845989 2.690268637 0.08553719 0.198349333 1.51E-05 4.822094289 1.888749027 RRVNDAEPGS(ph)PEAPQGK ddPTM_HeLa_A485_30min_R1 3 RRVNDAEPGSPEAPQGK 17 2 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 RRVNDAEPGS(1)PEAPQGK;RRVNDAEPGS(1)PEAPQGK;RRVNDAEPGS(1)PEAPQGK ;; 144.5 5.50E-08 1503770000 476980 718450 496910 484700 819980 809380 1098520 1386140 568820 698190 TRUE FALSE FALSE 583082.5554 802466.4778 680737.6872 511177.9337 738339.9121 851757.8853 863812.2279 1046186.992 682976.9565 524144.0822 1.112447083 1.531003602 1.298760608 0.975262244 1.4086583 1.625045315 1.648043462 1.99599123 1.303032848 1 18.99960392 -6.000845296 24.99269707 1.577448739 1.247881568 0.172435574 0.276873356 46.07946212 1362497.617 0.084434192 0.094586753 9.98E-07 6.000845296 -0.329567171 RRVNDAEPGS(ph)PEAPQGK ddPTM_HeLa_A486_30min_R1 3 RRVNDAEPGSPEAPQGK 17 2 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 RRVNDAEPGS(1)PEAPQGK;RRVNDAEPGS(1)PEAPQGK;RRVNDAEPGS(1)PEAPQGK ;; 167.02 3.91E-12 955090000 607945 498555 366650 255782 655768 459035 668948 686331 387980 779713 TRUE FALSE FALSE 565331.1949 459047.6861 508626.6992 595473.4225 573515.4626 402403.9288 501570.135 530068.4138 421610.4188 584467.7897 0.967258085 0.785411436 0.870239059 1.018830178 0.981261025 0.688496331 0.858165572 0.906924938 0.721357834 1 19.15676399 -6.209631652 24.99929236 0.830619398 0.919082198 0.160383431 0.101881569 684.7752769 330431.0908 0.033727707 0.03372768 6.17E-07 6.209631652 0.0884628 RRVNS(ph)GDTEVGSSLLR ddPTM_HeLa_A485_30min_R1 1 RRVNSGDTEVGSSLLR 16 2 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RRVNS(0.938)GDT(0.059)EVGS(0.001)S(0.001)LLR 61.181 0.01734 147750000 107300 111850 82450 81012 108500 164750 138390 132400 140930 78531 TRUE FALSE FALSE 131168.5148 124929.8845 112951.686 85437.48043 97697.35903 173376.0552 108821.846 99928.6924 169213.3583 58954.66696 2.224904687 2.119083882 1.915907457 1.449206396 1.657160732 2.940836819 1.845856343 1.695009022 2.870228381 1 15.8473184 RRVNS(ph)NGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 2 RRVNSNGKESPGSSEFFQEAVSHGK 25 3 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 0 RRVNS(0.984)NGKES(0.979)PGS(0.027)S(0.009)EFFQEAVSHGK;RRVNS(0.994)NGKES(0.992)PGS(0.009)S(0.005)EFFQEAVSHGK ; 87.357 0.0018743 649020000 273260 299860 186241 291900 337590 338410 455610 465860 214520 322770 TRUE FALSE FALSE 334045.7443 334926.0186 255139.296 307845.7579 303978.3542 356128.6243 358265.2015 351607.1046 257572.1963 242309.3791 1.378591887 1.38222474 1.052948495 1.270465712 1.25450511 1.469726948 1.478544507 1.451066838 1.062988966 1 17.88649072 -7.865624384 5.870632375 1.006828861 1.336852758 0.513439596 0.12134716 0.186822337 8.56479793 0.129573543 0.033740035 1.36E-08 7.865624384 0.330023897 RRVNS(ph)NGKESPGSSEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 1 RRVNSNGKESPGSSEFFQEAVSHGK 25 3 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 RRVNS(0.652)NGKES(0.347)PGSS(0.001)EFFQEAVSHGK 87.25 0.003813 335700000 134610 84997 61517 45893 104700 117210 120060 123350 74804 168610 TRUE FALSE FALSE 125174.5341 78261.52817 85338.02988 106841.2233 91567.54971 102749.8219 90019.71813 95265.89771 81288.07095 126388.9585 0.990391373 0.61921175 0.675201623 0.845336686 0.724490104 0.812965176 0.712243531 0.753751742 0.643158009 1 16.94751091 -11.18297394 2.428186934 1.697608058 0.749219135 0.338465297 0.103486682 5968440.013 1738570.056 22822348.25 0.024526366 6.56E-12 11.18297394 -0.948388924 RRVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_A485_30min_R1 3 RRVSEVEEEKEPVPQPLPSDDTR 23 3 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR ;; 191.4 2.04E-20 9433680000 3499870 3578510 2502620 3868520 3555610 3258150 4492700 4055500 2231040 4304770 TRUE FALSE FALSE 4278404.007 3996985.616 3428443.281 4079847.452 3201600.984 3428741.696 3532797.943 3060882.266 2678789.264 3231670.062 1.323898766 1.236817354 1.060889019 1.262457916 0.990695499 1.060981359 1.093180267 0.947151846 0.828917932 1 21.62384848 -4.676829131 0.344681933 0.920847372 1.51121683 0.649052586 0.086526778 3.213366533 0.380395453 0.088631036 0.774548748 2.10E-05 4.676829131 0.590369457 RRVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_A486_30min_R1 3 RRVSEVEEEKEPVPQPLPSDDTR 23 3 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR ;; 221.9 2.73E-37 11535900000 6213220 5116380 2886260 2369380 4854820 5350970 6635630 6003270 3989270 8125300 TRUE FALSE FALSE 5777705.363 4710939.415 4003897.169 5516036.382 4245883.206 4690821.726 4975325.189 4636456.471 4335063.136 6090671.993 0.948615419 0.773467923 0.657381841 0.905653167 0.697112439 0.77016489 0.816876232 0.761238904 0.71175449 1 22.53816998 -10.23169063 5.154575118 1.000024142 0.779667391 0.369165911 0.085234927 2.27E-05 3.39E-06 0.079352524 0.019243707 5.87E-11 10.23169063 -0.22035675 RRVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A485_30min_R1 1 RRVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 34 3 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RRVS(0.654)GPDPKPGS(0.171)NCS(0.171)PAQS(0.004)VLS(0.001)EVPSVPTNGMAK 181.21 7.70E-21 1314500000 509750 471590 300270 486910 591870 674050 870420 1032300 466820 729650 TRUE FALSE FALSE 623142.1289 526738.3482 411352.3683 513508.6604 532941.3446 709342.2157 684447.6563 779126.8064 560506.4921 547761.6832 1.137615405 0.961619559 0.750969593 0.937467289 0.97294382 1.29498327 1.249535477 1.422382818 1.023267069 1 19.06318883 -6.191727835 5.605101129 1.227321915 0.937718437 0.407812846 0.14579295 0.197992121 11.73377215 0.048422889 0.048222312 6.43E-07 6.191727835 -0.289603478 RRVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A486_30min_R1 2 RRVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 34 3 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RRVS(0.562)GPDPKPGS(0.143)NCS(0.143)PAQS(0.143)VLS(0.01)EVPSVPTNGMAK;RRVS(0.681)GPDPKPGS(0.106)NCS(0.106)PAQS(0.106)VLS(0.003)EVPSVPTNGMAK ; 128.43 2.93E-06 1957780000 266120 228280 117639 103340 253610 254370 302570 317140 186335 389950 TRUE FALSE FALSE 247466.3622 210190.2614 163191.9713 240580.7425 221799.869 222988.4156 226863.7857 244934.1451 202486.6678 292303.9819 0.846606196 0.719081075 0.55829541 0.82304983 0.758798657 0.76286479 0.776122803 0.837943238 0.692726341 1 18.15710996 -14 0.245342005 2.462556655 0.728554681 0.451990344 0.080831267 162.4331671 1.617179956 118.8023974 0.123279203 1.00E-14 14 -1.734001974 RRVS(ph)HS(ph)PPPK ddPTM_HeLa_A485_30min_R1 4 RRVSHSPPPK 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK ;;; 73.927 0.0074234 3407870000 792732 880750 693197 909240 940290 906483 1062330 994840 802680 1174780 TRUE FALSE FALSE 969072.4985 983746.051 949639.4166 958909.4789 846671.426 953945.0482 835354.5171 750853.9302 963770.5134 881928.9662 1.098810149 1.115448169 1.076775401 1.087286523 0.960022245 1.081657463 0.947190249 0.851376878 1.092798344 1 19.75030293 -5.740236416 0.996768242 0.972172946 1.110458291 0.353477003 0.066628778 0.572181017 1.215371439 0.03033975 0.04848493 1.82E-06 5.740236416 0.138285345 RRVS(ph)HS(ph)PPPK ddPTM_HeLa_A486_30min_R1 5 RRVSHSPPPK 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK;RRVS(1)HS(1)PPPK ;;;; 81.904 0.0041515 2377901000 692220 616882 433822 272869 624002 684227 765050 695450 541401 844050 TRUE FALSE FALSE 643698.9526 567998.0237 601809.4966 635252.822 545733.8506 599814.0295 573626.3981 537111.2166 588330.0746 632694.3862 1.017393179 0.897744687 0.951185137 1.004043715 0.862555228 0.948031218 0.906640569 0.848926794 0.929880346 1 19.27114927 -5.75847237 24.99987191 0.909585055 0.961430705 0.192766556 0.050073272 127.5408586 1074643.218 0.014535326 0.017942316 1.74E-06 5.75847237 0.05184565 RRWDNDDMTDDIPESSLFS(ph)PMPSEEK ddPTM_HeLa_A485_30min_R1 1 RRWDNDDMTDDIPESSLFSPMPSEEK 26 2 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 RRWDNDDMTDDIPES(0.003)S(0.002)LFS(0.994)PMPSEEK 98.37 0.00090245 264260000 28042 39653 42644 31468 51186 38587 36780 52461 32436 42957 TRUE FALSE FALSE 34279.84616 44290.07341 58419.79016 33187.01716 46089.74212 40607.35565 28921.65254 39594.85749 38945.60768 32248.61046 1.062986766 1.373394784 1.811544415 1.029099136 1.429200869 1.259197065 0.896834069 1.227800421 1.207667776 1 14.97694938 -6.532963877 24.04902465 1.09862408 1.35105573 0.23360885 0.220072323 209.4426887 499429.5898 0.08416178 0.065278916 2.93E-07 6.532963877 0.25243165 RRWDNDDMTDDIPESSLFS(ph)PMPSEEK ddPTM_HeLa_A486_30min_R1 1 RRWDNDDMTDDIPESSLFSPMPSEEK 26 2 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 RRWDNDDMTDDIPESSLFS(1)PMPSEEK 199.8 1.43E-28 137130000 57944 59755 39118 32800 65736 68156 71351 75235 42617 79850 TRUE FALSE FALSE 53882.42482 55019.79618 54265.53722 76360.05762 57490.77792 59747.60568 53498.22513 58105.63287 46311.07587 59855.04026 0.90021533 0.919217428 0.906616001 1.275749833 0.960500196 0.998205087 0.893796494 0.970772597 0.77372057 1 15.86918512 -6.756438359 24.32257735 0.907136793 0.997436157 0.111642502 0.115452442 203.5130462 989798.6698 0.046502509 0.034849866 1.75E-07 6.756438359 0.090299364 RRYEDDGIS(ph)DDEIEGK ddPTM_HeLa_A486_30min_R1 2 RRYEDDGISDDEIEGK 16 2 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RRYEDDGIS(1)DDEIEGK;RRYEDDGIS(1)DDEIEGK ; 153.19 2.52E-08 1248550000 485120 489800 302450 231120 654860 563630 614030 633510 395470 661770 TRUE FALSE FALSE 451115.5932 450986.4642 419566.7399 538059.0402 572721.3525 494095.0612 460393.1995 489273.6024 429749.658 496058.4846 0.909400015 0.909139705 0.845800955 1.084668556 1.154544011 0.996041952 0.928102661 0.986322415 0.866328611 1 18.9201507 -5.250279493 24.98631776 1.00470982 0.890216172 0.324021655 0.075495663 969.9290785 2171609.276 0.022700646 0.038842766 5.62E-06 5.250279493 -0.114493649 RRYEDDGIS(ph)DDEIEGKR ddPTM_HeLa_A485_30min_R1 5 RRYEDDGISDDEIEGKR 17 3 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RRYEDDGIS(1)DDEIEGKR;RRYEDDGIS(1)DDEIEGKR;RRYEDDGIS(1)DDEIEGKR;RRYEDDGIS(1)DDEIEGKR;RRYEDDGIS(1)DDEIEGKR ;;;; 223.15 1.84E-33 4150010000 1314665 1521650 1041949 1641420 2034740 1803850 2905980 3316850 1321765 2328430 TRUE FALSE FALSE 1607107.694 1699593.731 1427409.294 1731086.618 1832154.141 1898296.797 2285093.633 2503387.337 1587031.112 1747995.253 0.919400491 0.972310267 0.816597924 0.990326842 1.048145948 1.085985099 1.307265354 1.432147675 0.907915001 1 20.73726984 -6.038067864 1.636194116 1.19051766 0.913737741 0.337071664 0.145033166 0.379199848 2.052395574 0.057388087 0.061778087 9.16E-07 6.038067864 -0.27677992 RRYEDDGIS(ph)DDEIEGKR ddPTM_HeLa_A486_30min_R1 2 RRYEDDGISDDEIEGKR 17 3 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RRYEDDGIS(1)DDEIEGKR;RRYEDDGIS(1)DDEIEGKR ; 190.19 3.57E-17 1951010000 632310 505150 355190 323036 678330 646830 871670 860480 414090 904740 TRUE FALSE FALSE 587988.3343 465120.0743 492729.0803 752044.1333 593247.5262 567030.6911 653568.9464 664567.4881 449983.6546 678187.2151 0.867000028 0.685828432 0.726538439 1.108903436 0.874754807 0.836097583 0.963699893 0.979917452 0.663509492 1 19.37132406 RRYS(ph)DFEWLK ddPTM_HeLa_A485_30min_R1 1 RRYSDFEWLK 10 2 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RRYS(1)DFEWLK 152.88 2.06E-06 1198000000 359340 439910 289100 300790 414610 466280 553080 616330 345920 461560 TRUE FALSE FALSE 439273.9433 491353.6478 396050.1205 317221.3961 373329.9726 490693.6998 434909.9398 465174.1011 415342.971 346501.5864 1.267740064 1.418041553 1.142996558 0.915497673 1.077426446 1.41613695 1.255145595 1.342487652 1.198675525 1 18.40250243 -11.38967175 1.659502628 6.09E-05 1.225593689 0.175948147 0.14673672 1561667.09 153981.9147 5829042.352 0.043040997 4.08E-12 11.38967175 1.225532767 RRYS(ph)DFEWLK ddPTM_HeLa_A486_30min_R1 1 RRYSDFEWLK 10 2 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RRYS(1)DFEWLK 131.53 5.13E-05 843610000 261670 239930 149000 108630 259530 242810 254250 260180 168300 312870 TRUE FALSE FALSE 243328.2843 220917.073 206696.7904 252896.1299 226977.3274 212854.5709 190633.9608 200942.6937 182888.3795 234525.3156 1.03753526 0.941975379 0.881341061 1.078331903 0.967815892 0.907597418 0.812850248 0.856805984 0.779823616 1 17.83938414 -6.435690343 3.182749465 0.850852262 0.978933326 0.367940394 0.073044518 0.264531166 5.155528795 0.027545532 0.023177498 3.67E-07 6.435690343 0.128081063 RRYS(ph)DFEWLR ddPTM_HeLa_A485_30min_R1 4 RRYSDFEWLR 10 2 O60493-3;O60493-4;O60493 O60493-3 SNX3 Sorting nexin-3 1 0 RRYS(1)DFEWLR;RRYS(1)DFEWLR;RRYS(1)DFEWLR;RRYS(1)DFEWLR ;;; 127.32 7.12E-05 3622490000 577824 934960 794900 416487 997290 856170 1076240 1388880 602664 623378 TRUE FALSE FALSE 706358.9553 1044295.439 1088966.589 439238.6302 897996.3059 900997.7373 846292.5319 1048255.002 723613.1368 467981.337 1.509374198 2.231489498 2.326944479 0.938581511 1.918872047 1.925285617 1.808389491 2.239950441 1.546243578 1 18.83609147 -8.010044088 23.49201597 0.999999974 1.863513146 0.322162983 0.385060024 239.0887945 559205.1204 0.371096972 0.095816826 9.77E-09 8.010044088 0.863513172 RRYS(ph)DFEWLR ddPTM_HeLa_A486_30min_R1 2 RRYSDFEWLR 10 2 O60493-3;O60493-4;O60493 O60493-3 SNX3 Sorting nexin-3 1 0 RRYS(1)DFEWLR;RRYS(1)DFEWLR ; 153.14 2.00E-06 2044130000 430210 439740 436620 191102 643980 420820 515830 547190 329470 408090 TRUE FALSE FALSE 400054.5006 404893.4009 605690.9571 444895.1138 563206.0235 368903.507 386763.8781 422606.7821 358028.7249 305901.6078 1.307788159 1.323606645 1.980018874 1.454373244 1.841134565 1.205954783 1.264340782 1.381512131 1.170404848 1 18.22270816 -6.289604012 24.73577396 1.232030598 1.582153527 0.430153539 0.21575988 688.3014828 604502.9336 0.076531501 0.0675089 5.13E-07 6.289604012 0.350122929 RS(ph)AS(ph)PERMD ddPTM_HeLa_A485_30min_R1 3 RSASPERMD 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 RS(1)AS(1)PERMD;RS(1)AS(1)PERMD;RS(1)AS(1)PERMD ;; 96.067 0.0013188 2575620000 1623370 1970610 1894570 1862810 2280240 1955720 2253760 2210330 1944330 2380170 TRUE FALSE FALSE 1984483.056 2201055.697 2595450.283 1964570.593 2053211.299 2058118.475 1772225.764 1668243.102 2334539.197 1786837.423 1.110611984 1.231816431 1.452538574 1.099468014 1.149075609 1.1518219 0.991822615 0.933628925 1.306520205 1 20.76897694 -5.476690181 24.62485398 1.087473771 1.264060458 0.290715591 0.125098346 453.9429294 242013.4884 0.035452302 0.05258203 3.34E-06 5.476690181 0.176586687 RS(ph)AS(ph)PERMD ddPTM_HeLa_A486_30min_R1 7 RSASPERMD 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 RS(1)AS(1)PERMD;RS(1)AS(1)PERMD;RS(1)AS(1)PERMD;RS(1)AS(1)PERMD;RS(1)AS(1)PERMD;RS(1)AS(1)PERMD;RS(1)AS(1)PERMD ;;;;;; 92.295 0.0016349 5015710000 6602898 7800132 5895022 2451349 7548371 7333604 7395381 7330463 6555849 7997341 TRUE FALSE FALSE 6140068.948 7182021.133 8177732.393 5706864.356 6601583.923 6428858.501 5544978.453 5661476.598 7124115.27 5994754.76 1.024240222 1.198050866 1.364147946 0.951976283 1.101226687 1.072413928 0.924971692 0.944405038 1.188391445 1 22.5152693 -5.283432827 24.95845314 1.024715523 1.19573684 0.343471122 0.107237186 849.9240923 964502.9813 0.030552606 0.045359428 5.21E-06 5.283432827 0.171021317 RS(ph)ASASHQADIK ddPTM_HeLa_A485_30min_R1 3 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 RS(0.86)AS(0.103)AS(0.037)HQADIK;RS(0.355)AS(0.355)AS(0.289)HQADIK;RS(0.403)AS(0.403)AS(0.195)HQADIK ;; 180.1 4.93E-13 5393590000 4421310 4161580 2085330 3513410 3027110 3729250 4740150 7107970 3366200 9251190 TRUE FALSE FALSE 5404815.156 4648240.58 2856780.345 3705338.692 2725720.3 3924507.763 3727378.229 5364729.213 4041765.463 6945038.589 0.7782268 0.669289381 0.411341177 0.533523125 0.392470145 0.565080771 0.536696547 0.772454918 0.581964436 1 22.72755128 -8.520453003 0.737136835 1.003157093 0.550675509 0.521034756 0.121680564 1.439210288 1.279471475 0.142141791 0.046194096 3.02E-09 8.520453003 -0.452481584 RS(ph)ASASHQADIK ddPTM_HeLa_A486_30min_R1 3 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 RS(0.408)AS(0.408)AS(0.185)HQADIK;RS(0.705)AS(0.285)AS(0.011)HQADIK;RS(0.407)AS(0.407)AS(0.185)HQADIK ;; 164.59 1.45E-10 1592780000 2655240 2093840 1516790 330416 2480200 2047030 2210170 1767880 2032700 2309790 TRUE FALSE FALSE 2469121.388 1927916.493 2104131.709 769225.1463 2169110.189 1794488.251 1657162.089 1365372.317 2208896.073 1731403.55 1.426080816 1.113499215 1.21527515 0.44427837 1.252804518 1.036435585 0.957120649 0.788592767 1.275783495 1 20.72351059 -4.37823987 1.636562381 0.974414772 1.507920883 0.245305613 0.231713002 1.094701055 3.417208006 0.063233392 0.862885103 4.19E-05 4.37823987 0.533506111 RS(ph)ASPDDDLGSSNWEAADLGNEERK ddPTM_HeLa_A485_30min_R1 3 RSASPDDDLGSSNWEAADLGNEERK 25 2 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 RS(0.585)AS(0.415)PDDDLGSSNWEAADLGNEERK;RS(0.608)AS(0.392)PDDDLGSSNWEAADLGNEERK;RS(0.592)AS(0.408)PDDDLGSSNWEAADLGNEERK ;; 195.89 9.70E-22 734550000 292332 355350 262632 308662 487720 419980 652930 716510 329962 455400 TRUE FALSE FALSE 357360.2449 396905.0914 359790.5058 325523.4235 439160.8843 441969.5034 513426.1716 540784.7991 396182.3468 341877.161 1.045288442 1.160958194 1.052397021 0.952164873 1.284557538 1.292772825 1.501785524 1.581810254 1.158844146 1 18.38311852 -5.900440037 5.248680762 1.348890237 1.061509486 0.351029927 0.161696232 0.209378339 9.101102332 0.050472865 0.057564944 1.26E-06 5.900440037 -0.287380751 RS(ph)ASPDDDLGSSNWEAADLGNEERK ddPTM_HeLa_A486_30min_R1 1 RSASPDDDLGSSNWEAADLGNEERK 25 2 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 RS(0.596)AS(0.404)PDDDLGSSNWEAADLGNEERK 138.55 6.05E-07 201000000 133390 104820 76943 60086 142410 121470 153780 173430 80933 176150 TRUE FALSE FALSE 124040.0498 96513.68145 106737.3902 139883.2446 124547.6099 106484.2664 115302.6175 133943.775 87948.3376 132040.8935 0.93940632 0.73093781 0.808366162 1.059393351 0.943250281 0.806449151 0.873234151 1.014411304 0.666068937 1 17.01062528 -11.53751721 2.361740959 3.319316727 0.875311609 0.098059779 0.116538813 7607218.971 1604347.469 94298023.45 0.029645697 2.90E-12 11.53751721 -2.444005119 RS(ph)ASPHDVDLCLVSPCEFEHR ddPTM_HeLa_A485_30min_R1 2 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR ; 185.06 2.68E-19 1538540000 270680 346150 447080 281810 489670 337010 393010 413210 376220 392970 TRUE FALSE FALSE 330891.8322 386629.2314 612473.4966 297204.5667 440916.7355 354655.3225 309040.2029 311869.5996 451723.9031 295009.8111 1.121629925 1.310563977 2.076112297 1.007439602 1.494583295 1.20218145 1.047559069 1.057149925 1.531216543 1 18.17040341 -6.366879919 5.445094296 1.159219059 1.411934787 0.133677176 0.29888518 0.48589453 20.81440174 0.106968901 0.093889772 4.30E-07 6.366879919 0.252715728 RS(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_HeLa_A485_30min_R1 2 RSASPHDVDLCLVSPCEFEHRK 22 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK ; 95.646 0.000415 2203590000 669860 1033360 793300 607350 1148280 1018030 1260710 1569780 884480 981380 TRUE FALSE FALSE 818868.046 1154202.463 1086774.682 640527.9926 1033953.211 1071332.477 991349.0094 1184788.994 1061987.023 736740.027 1.111474898 1.566634662 1.475112851 0.869408433 1.403416637 1.454152669 1.345588638 1.608150705 1.441467796 1 19.4907961 -7.019193751 23.9201497 1.410259453 1.323121375 0 0.237721276 2196.311348 2737133.978 0.109863773 0.064832878 9.57E-08 7.019193751 -0.087138078 RS(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_HeLa_A486_30min_R1 2 RSASPHDVDLCLVSPCEFEHRK 22 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK ; 93.529 0.00049607 2158620000 794290 699630 646040 182772 1011620 679810 951660 922000 580710 742240 TRUE FALSE FALSE 738614.3727 644188.7708 896203.9896 425502.4528 884733.1866 595941.954 713544.6024 712080.7271 631046.4104 556378.2728 1.327539929 1.157825174 1.610781789 0.764771871 1.590164875 1.071109321 1.282481069 1.27984999 1.134203906 1 19.08570656 -14 0.170742946 0.005582406 1.306922522 0.108174345 0.230892152 306.2172618 2.891362849 102.5250628 0.767531091 1.00E-14 14 1.301340115 RS(ph)DSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_HeLa_A485_30min_R1 1 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RS(0.416)DS(0.416)MT(0.168)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 242.21 6.05E-52 428380000 22466 39745 35501 21939 30929 30892 37451 35723 28951 38207 TRUE FALSE FALSE 27463.48419 44392.83201 48634.29722 23137.47202 27849.60016 32509.45735 29449.2879 26961.87824 34761.20015 28682.69805 0.957493055 1.547721624 1.695597016 0.806669999 0.970954689 1.133416992 1.02672656 0.940004953 1.211922257 1 14.80789312 -5.267846112 24.99561696 1.014174567 1.415015674 0.434301272 0.202428365 457.0455898 1783145.576 0.05686788 0.086717511 5.40E-06 5.267846112 0.400841107 RS(ph)DSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_HeLa_A486_30min_R1 1 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RS(0.456)DS(0.456)MT(0.087)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 235.94 1.82E-51 3030000000 157570 163450 259750 65569 206920 192970 197420 222740 111890 148040 TRUE FALSE FALSE 146525.1567 150497.6267 360332.1563 152647.9457 180966.1641 169163.3234 148023.4279 172026.9644 121588.7153 110969.8204 1.320405459 1.356203211 3.247118496 1.375580722 1.63076919 1.524408373 1.333907069 1.550213957 1.095691737 1 16.75980785 -6.917251121 0.666779014 1.07015665 1.867951467 0.209893141 0.530598052 1.254347038 1.094877646 0.493946964 0.302242198 1.21E-07 6.917251121 0.797794817 RS(ph)EEHS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 RSEEHSPPR 9 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 RS(1)EEHS(1)PPR;RS(1)EEHS(1)PPR ; 69.92 0.0066538 242570000 295150 303510 282560 125877 383200 350340 374180 354900 314940 336470 TRUE FALSE FALSE 274461.5092 279458.7622 391974.7992 293048.0175 335135.4828 307118.6128 280556.2063 274097.0174 342239.2528 252215.7219 1.088201429 1.108014838 1.55412516 1.161894331 1.328765234 1.21768227 1.11236605 1.086756271 1.356930687 1 17.94429868 -6.583827219 5.764115094 1.147328953 1.254586354 0.105085891 0.149521535 0.502894902 33.12337202 0.057817672 0.044673978 2.61E-07 6.583827219 0.107257401 RS(ph)EEKEAGEI ddPTM_HeLa_A486_30min_R1 2 RSEEKEAGEI 10 2 Q9NQ29-3;Q9NQ29;B8ZZ08 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 1 0 RS(1)EEKEAGEI;RS(1)EEKEAGEI ; 160.81 4.20E-07 2806100000 2513400 2606700 1815350 1744020 3434600 3328900 4683000 4256300 2168100 4008700 TRUE FALSE FALSE 2337223.639 2400135.599 2518302.137 4060166.698 3003800.442 2918214.164 3511263.868 3287233.404 2356032.654 3004895.428 0.777805316 0.798741805 0.838066481 1.351184025 0.999635599 0.971153318 1.168514497 1.093959335 0.784064774 1 21.51888335 -5.029135289 24.63918161 1.0587711 0.795806089 0.407623164 0.137554091 524.4555905 443522.6144 0.036964869 0.064183616 9.35E-06 5.029135289 -0.262965011 RS(ph)ES(ph)LS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RSESLSPR 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 3 0 RS(1)ES(1)LS(1)PR;RS(1)ES(1)LS(1)PR ; 109.6 0.0010848 987960000 1234070 1348410 1378740 1797290 1936980 1336260 1674280 1657290 1515720 2268500 TRUE FALSE FALSE 1508584.614 1506094.82 1888793.3 1895471.402 1744127.47 1406224.507 1316556.4 1250837.029 1819911.101 1703004.699 0.885837024 0.884375023 1.109094591 1.113015955 1.024147186 0.825731431 0.773078548 0.734488302 1.06864714 1 20.69965098 -6.257735389 24.63983351 0.857087692 1.008660834 0.199564097 0.118322485 378.6926034 2519158.075 0.041561115 0.040004726 5.52E-07 6.257735389 0.151573142 RS(ph)ES(ph)LS(ph)PR ddPTM_HeLa_A486_30min_R1 2 RSESLSPR 8 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 3 0 RS(1)ES(1)LS(1)PR;RS(1)ES(1)LS(1)PR ; 74.48 0.011658 839480000 990320 1114720 942520 494000 1169080 1158790 1182350 1143320 1136240 1258740 TRUE FALSE FALSE 920903.682 1026385.527 1307488.986 1150056.965 1022443.085 1015830.272 886513.5244 883010.9945 1234730.198 943543.311 0.976005734 1.087799061 1.385722277 1.21887035 1.083620723 1.076612234 0.93955785 0.935845747 1.308609985 1 19.84772922 -5.936485963 4.252240429 1.0441642 1.17650294 0.132061501 0.137647362 0.422229192 15.39449235 0.046093461 0.052086012 1.16E-06 5.936485963 0.13233874 RS(ph)ET(ph)PPHWR ddPTM_HeLa_A485_30min_R1 2 RSETPPHWR 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR ; 76.357 0.0081876 1179820000 349699 446960 455060 503660 707610 441520 576620 575370 481290 667400 TRUE FALSE FALSE 427488.3361 499228.084 623405.6306 531173.6705 637157.8638 464637.3045 453420.4264 434259.6054 577880.4883 501029.4626 0.853219956 0.996404645 1.244249445 1.060164541 1.271697398 0.927365233 0.904977572 0.866734669 1.153386241 1 18.93453592 RS(ph)ET(ph)PPHWR ddPTM_HeLa_A486_30min_R1 5 RSETPPHWR 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR;RS(1)ET(1)PPHWR ;;;; 96.135 0.0019682 2889720000 729230 937240 890120 397464 1249370 932820 1034620 1134770 865730 847000 TRUE FALSE FALSE 678114.7427 862969.689 1234798.302 925316.2787 1092662.365 817738.1526 775747.1329 876407.6429 940772.1735 634905.687 1.068055865 1.35920926 1.944853114 1.457407451 1.720983742 1.287967913 1.2218305 1.380374536 1.481751058 1 19.27618277 -6.306153809 23.59134389 1.294873363 1.522944397 0.18735463 0.242862391 445.3138826 234945.8184 0.087974762 0.077587032 4.94E-07 6.306153809 0.228071034 RS(ph)FSKEVEER ddPTM_HeLa_A485_30min_R1 4 RSFSKEVEER 10 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 RS(0.689)FS(0.311)KEVEER;RS(0.862)FS(0.138)KEVEER;RS(0.726)FS(0.274)KEVEER;RS(0.583)FS(0.417)KEVEER ;;; 129.54 3.83E-05 2211130000 1597910 1564700 1441365 2693190 3179090 2219020 3754340 4090740 1844330 4442760 TRUE FALSE FALSE 1953359.567 1747678.054 1974585.894 2840312.15 2862568.637 2335204.456 2952194.589 3087479.601 2214470.114 3335261.695 0.585669056 0.524000278 0.592033272 0.851600987 0.858274072 0.70015629 0.885146312 0.92570835 0.663956929 1 21.66936853 -5.218558811 4.901735596 0.834736594 0.557657192 0.639222376 0.094180482 0.125919071 7.292205735 0.02503491 0.043437315 6.05E-06 5.218558811 -0.277079401 RS(ph)FSSQRPVDR ddPTM_HeLa_A486_30min_R1 1 RSFSSQRPVDR 11 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 RS(0.472)FS(0.472)S(0.056)QRPVDR 74.296 0.0076681 1137500000 468870 483240 407700 147670 566620 429700 519870 517760 388570 425470 TRUE FALSE FALSE 436004.6342 444946.3025 565572.3586 343783.2228 495549.2361 376687.9829 389793.0274 399877.3506 422251.5605 318929.5427 1.367087635 1.395124135 1.77334578 1.077928435 1.553789066 1.181100941 1.222191661 1.253810943 1.323965027 1 18.28287822 -8.138939471 0.134400617 0.741083051 1.671120024 0.329962218 0.175947884 10.92140269 0.932099053 3.443406192 2.304723395 7.26E-09 8.138939471 0.930036973 RS(ph)HSPSIDGTPK ddPTM_HeLa_A486_30min_R1 2 RSHSPSIDGTPK 12 1 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 RS(0.806)HS(0.193)PS(0.002)IDGTPK;RS(0.933)HS(0.065)PS(0.001)IDGTPK ; 134.9 1.01E-05 587720000 937220 902010 487990 263254 934790 868750 1077810 1086410 668220 1077930 TRUE FALSE FALSE 871525.7178 830531.4425 676952.7968 612868.6161 817539.9216 761572.4578 808130.5381 839058.1592 726141.8476 808009.3119 1.078608507 1.027873603 0.837803212 0.758492021 1.011795173 0.942529308 1.000150031 1.038426348 0.898680049 1 19.62401239 RS(ph)NS(ph)PDKFK ddPTM_HeLa_A486_30min_R1 2 RSNSPDKFK 9 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 RS(1)NS(1)PDKFK;RS(1)NS(1)PDKFK ; 90.412 0.012812 1297450000 2427530 2345670 873650 2207050 1724890 3934800 4786700 4034400 2105020 5773700 TRUE FALSE FALSE 2257372.683 2159790.566 1211950.677 5138123.938 1508538.212 3449364.382 3589017.031 3115855.19 2287484.828 4327927.94 0.521582779 0.499035704 0.280030235 1.187201823 0.348558995 0.797001343 0.829269129 0.71994156 0.528540415 1 22.04524505 -5.235046884 0.098136464 1.188220398 6.97E-21 0.194939154 0.245237726 73.16717085 1.685636803 5.906038403 15.3217694 5.82E-06 5.235046884 -1.188220398 RS(ph)NSAPLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_A485_30min_R1 4 RSNSAPLIHGLSDTSPVFQAEAPSAR 26 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RS(0.418)NS(0.418)APLIHGLS(0.135)DT(0.027)S(0.003)PVFQAEAPSAR;RS(0.799)NS(0.2)APLIHGLS(0.001)DTSPVFQAEAPSAR;RS(0.457)NS(0.457)APLIHGLS(0.034)DT(0.051)SPVFQAEAPSAR;RS(0.481)NS(0.481)APLIHGLS(0.016)DT(0.023)SPVFQAEAPSAR ;;; 195.8 2.57E-21 1067260000 260467 408610 412061 198807 483248 412494 440199 609451 374715 313672 TRUE FALSE FALSE 318406.9855 456393.3851 564499.5112 209667.323 435134.1323 434091.548 346146.8876 459982.1867 449916.8634 235479.3431 1.352165253 1.938146162 2.397235799 0.890385204 1.847865408 1.84343791 1.469967102 1.953386571 1.910642596 1 17.84524098 -10.06472065 4.946312586 0.999982507 1.739709417 0.242376785 0.389018572 7.36E-05 1.39E-05 0.369165409 0.08953365 8.62E-11 10.06472065 0.73972691 RS(ph)NSAPLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_A486_30min_R1 3 RSNSAPLIHGLSDTSPVFQAEAPSAR 26 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RS(0.499)NS(0.499)APLIHGLS(0.001)DTSPVFQAEAPSAR;RS(0.475)NS(0.475)APLIHGLS(0.02)DT(0.03)SPVFQAEAPSAR;RS(0.496)NS(0.496)APLIHGLS(0.005)DT(0.002)SPVFQAEAPSAR ;; 173.04 3.42E-14 753640000 293518 288954 293089 58243 437180 251996 324727 328468 253830 290193 TRUE FALSE FALSE 272943.9039 266056.2327 406580.91 135592.6474 382344.8079 220907.2956 243476.87 253683.0068 275832.1888 217526.784 1.254759984 1.223096429 1.869107347 0.62333771 1.757690712 1.015540669 1.11929605 1.166215039 1.268037819 1 17.73083352 RS(ph)NSPDKFK ddPTM_HeLa_A485_30min_R1 1 RSNSPDKFK 9 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 RS(0.5)NS(0.5)PDKFK 89.356 0.0025982 4297500000 2708000 1654800 1027800 5235300 2241100 1948500 3765200 2879600 1966900 6510200 TRUE FALSE FALSE 3310385.258 1848314.465 1408025.99 5521291.183 2017968.215 2050520.447 2960734.261 2173373.585 2361638.789 4887326.951 0.677340659 0.378185148 0.28809736 1.129715944 0.412898141 0.419558681 0.60579828 0.444695762 0.483216861 1 22.22061419 -10.68141531 2.576773431 1.070121134 0.535219697 0.276315818 0.224404482 23787596.25 19397549.42 10904600.42 0.0576097 2.08E-11 10.68141531 -0.534901437 RS(ph)NSSGNLHMAGLTASPTPPSSSIITY ddPTM_HeLa_A485_30min_R1 3 RSNSSGNLHMAGLTASPTPPSSSIITY 27 1 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;Q9UKI8-3 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 RS(0.312)NS(0.312)S(0.312)GNLHMAGLT(0.064)AS(0.001)PTPPSSSIITY;RS(0.333)NS(0.333)S(0.333)GNLHMAGLTASPTPPSSSIITY;RS(0.453)NS(0.453)S(0.093)GNLHMAGLTASPTPPSSSIITY ;; 220.26 2.08E-38 1374800000 378472 559124 573806 278746 728284 480022 594059 758364 544090 470956 TRUE FALSE FALSE 462661.7907 624508.6881 786080.7175 293973.1882 655773.4878 505155.2097 467133.4416 572374.0399 653283.8723 353555.3365 1.308597956 1.766367591 2.223359786 0.831477163 1.854797312 1.428786833 1.321245625 1.61890935 1.847755655 1 18.43157651 -5.240591598 24.99966773 1.455527188 1.766134218 0.152709605 0.370680264 1741.138806 2087888.269 0.097931898 0.169387496 5.75E-06 5.240591598 0.31060703 RS(ph)NSTTQVSQPR ddPTM_HeLa_A485_30min_R1 2 RSNSTTQVSQPR 12 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 RS(0.445)NS(0.445)T(0.091)T(0.019)QVSQPR;RS(0.457)NS(0.457)T(0.073)T(0.013)QVSQPR ; 49.482 0.031321 46246000 15215.5 27111 29772 16436.2 28694 26030 23601 32024 23628 20026 TRUE FALSE FALSE 18600.13548 30281.39562 40785.90172 17334.06799 25837.12461 27392.89055 18558.45355 24170.06379 28369.92287 15033.88675 1.237214021 2.014209374 2.712931286 1.152999771 1.718592473 1.82207642 1.234441489 1.607705591 1.887065091 1 13.87593042 -5.295308079 24.99723202 1.527144165 1.990728396 0.216800546 0.430479219 992.5641905 732572.6467 0.120941886 0.179396587 5.07E-06 5.295308079 0.463584232 RS(ph)NSTTQVSQPR ddPTM_HeLa_A486_30min_R1 1 RSNSTTQVSQPR 12 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 RS(0.605)NS(0.385)T(0.01)TQVSQPR 120.3 7.39E-05 115250000 48949 50343 49706 15255 63947 50539 53323 60605 45581 46705 TRUE FALSE FALSE 45517.92787 46353.63733 68953.49437 35514.41095 55926.17098 44304.01202 39981.02141 46806.5645 49531.99778 35009.764 1.30014952 1.324020274 1.969550391 1.014414463 1.597444958 1.265475883 1.141996313 1.336957441 1.414805246 1 15.09546972 -6.420369929 9.229871782 1.244778461 1.440039745 0.148120313 0.250447664 0.811220175 67.41689951 0.086237851 0.075971636 3.80E-07 6.420369929 0.195261283 RS(ph)NTLDIMDGR ddPTM_HeLa_A485_30min_R1 3 RSNTLDIMDGR 11 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 RS(0.619)NT(0.381)LDIMDGR;RS(0.722)NT(0.278)LDIMDGR;RS(0.5)NT(0.5)LDIMDGR ;; 106.52 0.00040827 389470000 353589 480349 440884 313227 511300 452390 498650 595260 425670 475370 TRUE FALSE FALSE 432243.6532 536521.6371 603985.3383 330337.7979 460393.1767 476076.4409 392109.3539 449271.5517 511098.0645 356869.0075 1.21121096 1.503413369 1.692456687 0.925655607 1.290090109 1.334036946 1.098748688 1.258925662 1.432172741 1 18.44503509 -5.25302849 24.99997913 1.208362108 1.472465618 0.327585209 0.181130409 782.6239239 2326214.537 0.048962188 0.083085532 5.58E-06 5.25302849 0.26410351 RS(ph)PASIDR ddPTM_HeLa_A485_30min_R1 4 RSPASIDR 8 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 RS(1)PASIDR;RS(1)PASIDR;RS(1)PASIDR;RS(1)PASIDR ;;; 97.813 0.001535 3107420000 664895 889990 924650 712387 1157180 820504 1031990 1051970 861762 960200 TRUE FALSE FALSE 812798.5989 994066.5886 1266716.513 751302.898 1041967.096 863464.3207 811496.9059 793972.7081 1034709.729 720839.8112 1.127571738 1.379039522 1.757278792 1.04226055 1.445490496 1.197858813 1.125765938 1.10145513 1.435422562 1 19.45931917 -6.377289097 6.231452899 1.172783372 1.356967987 0.157350966 0.206527789 0.473169085 22.65589367 0.072853603 0.06400028 4.19E-07 6.377289097 0.184184615 RS(ph)PASIDR ddPTM_HeLa_A486_30min_R1 4 RSPASIDR 8 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 RS(1)PASIDR;RS(1)PASIDR;RS(1)PASIDR;RS(1)PASIDR ;;; 108.35 0.00076426 2077040000 703280 793235 646465 264966 918272 729571 798874 843089 628189 765957 TRUE FALSE FALSE 653983.7037 730376.1697 896793.5609 616854.2386 803093.7632 639563.9478 598987.2756 651136.0392 682640.9283 574156.3817 1.139034111 1.272085782 1.561932584 1.07436625 1.39873698 1.113919427 1.043247615 1.134074374 1.188945991 1 19.13108421 -6.351604852 7.74632055 1.09995956 1.291256133 0.344160639 0.133339864 0.356508945 27.32900839 0.046374276 0.040842628 4.45E-07 6.351604852 0.191296573 RS(ph)PASPHPPPFTHR ddPTM_HeLa_A485_30min_R1 1 RSPASPHPPPFTHR 14 1 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 RS(1)PASPHPPPFTHR 124.84 2.47E-05 74400000 20419 29839 33022 22531 40251 34205 36739 38144 34648 33040 TRUE FALSE FALSE 24961.13611 33328.41149 45238.21196 23761.81148 36243.46911 35995.92091 28889.41252 28789.12419 41601.53579 24803.73606 1.00634582 1.343685137 1.823846692 0.95799324 1.461210079 1.4512298 1.164720204 1.160676929 1.677228612 1 14.59826982 -6.761843365 24.99999981 1.264046202 1.350893965 0.022712229 0.279293497 60.61029199 3750354.106 0.110453978 0.079732411 1.73E-07 6.761843365 0.086847763 RS(ph)PASPHPPPFTHR ddPTM_HeLa_A486_30min_R1 2 RSPASPHPPPFTHR 14 1 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 RS(1)PASPHPPPFTHR;RS(1)PASPHPPPFTHR ; 102.65 0.00042377 195215000 77981 76688 73669 12335.4 92750 73745 76486 86780 67561 60715 TRUE FALSE FALSE 72514.93459 70610.96359 102195.6097 28717.4346 81116.43014 64647.09168 57348.39381 67022.08839 73417.24188 45511.56881 1.593329707 1.551494827 2.24548642 0.630991973 1.782325511 1.420454038 1.260083871 1.472638499 1.613155595 1 15.4739457 -12.21273434 0.090935647 8.34E-14 1.914036414 0.141011098 0.383364031 287.0204719 2.662024775 69.49672112 9.892091442 6.13E-13 12.21273434 1.914036414 RS(ph)PERPTGDLR ddPTM_HeLa_A485_30min_R1 4 RSPERPTGDLR 11 2 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 RS(0.996)PERPT(0.004)GDLR;RS(1)PERPTGDLR;RS(1)PERPTGDLR;RS(1)PERPTGDLR ;;; 102.73 0.00071654 5527420000 2534910 3089430 3245820 2991750 4091640 2971810 3750910 3639560 3312940 3895330 TRUE FALSE FALSE 3098791.984 3450711.964 4446583.888 3155181.727 3684261.955 3127409.376 2949497.436 2746952.203 3977816.67 2924295.919 1.059671138 1.180014629 1.520565637 1.078954324 1.259880004 1.069457217 1.008617978 0.939355072 1.360264754 1 21.47965788 -6.270105877 22.62522118 1.067566091 1.226488434 0.17109387 0.157957194 303.641976 792698.5781 0.054941647 0.049321634 5.37E-07 6.270105877 0.158922343 RS(ph)PERPTGDLR ddPTM_HeLa_A486_30min_R1 5 RSPERPTGDLR 11 2 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 RS(1)PERPTGDLR;RS(0.999)PERPT(0.001)GDLR;RS(1)PERPTGDLR;RS(0.996)PERPT(0.004)GDLR;RS(1)PERPTGDLR ;;;; 94.122 0.0015708 8763880000 2527652 2967240 2515279 1003633.9 3355196 2741345 3046016 3155652 2387258 2731730 TRUE FALSE FALSE 2350476.648 2732105.096 3489262.39 2336510.44 2934356.032 2403145.726 2283870.579 2437178.927 2594187.446 2047687.027 1.147869091 1.334239588 1.704001805 1.141048612 1.433010022 1.173590345 1.115341626 1.190210659 1.266886693 1 20.9655638 -6.319017607 7.748605043 1.158238919 1.358742721 0.28454151 0.160340069 0.430564477 52.58689679 0.056507858 0.049885501 4.80E-07 6.319017607 0.200503802 RS(ph)PESCSKPEK ddPTM_HeLa_A485_30min_R1 5 RSPESCSKPEK 11 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 RS(0.958)PES(0.034)CS(0.008)KPEK;RS(0.889)PES(0.11)CS(0.001)KPEK;RS(0.971)PES(0.028)CSKPEK;RS(0.505)PES(0.489)CS(0.006)KPEK;RS(1)PESCSKPEK ;;;; 127.36 2.42E-05 8157840000 3884670 2862190 1839580 5991550 3957120 3689520 5950710 5281340 3483700 7814900 TRUE FALSE FALSE 4748801.44 3196898.223 2520117.193 6318853.205 3563135.239 3882697.562 4679292.196 3986083.084 4182846.636 5866789.253 0.809437877 0.544914447 0.429556455 1.077054745 0.607339907 0.661809619 0.797589958 0.679431783 0.712970324 1 22.48413974 -14 0.231105921 2.624924596 0.66560584 0.228468698 0.164621104 247.8614318 2.481110264 188.4786614 0.283583563 1.00E-14 14 -1.959318756 RS(ph)PESCSKPEK ddPTM_HeLa_A486_30min_R1 6 RSPESCSKPEK 11 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 RS(0.999)PES(0.001)CSKPEK;RS(0.624)PES(0.345)CS(0.031)KPEK;RS(0.847)PES(0.152)CS(0.001)KPEK;RS(1)PESCSKPEK;RS(1)PESCSKPEK;RS(1)PESCSKPEK ;;;;; 132.08 1.81E-05 7485880000 5171970 3289230 2079630 2545070 3616620 6418020 6856600 5599130 4175970 7553530 TRUE FALSE FALSE 4809441.611 3028579.436 2884918.43 5925051.581 3162989.796 5626229.946 5141006.158 4324330.327 4537946.442 5662076.923 0.849412976 0.53488843 0.509515937 1.046444911 0.558627133 0.993668935 0.907971797 0.763735708 0.801463227 1 22.43289992 -5.248362042 24.98703649 0.851655785 0.62163405 0.314042266 0.158550187 948.364491 1812049.277 0.041589911 0.071484052 5.64E-06 5.248362042 -0.230021735 RS(ph)PILLPK ddPTM_HeLa_A485_30min_R1 1 RSPILLPK 8 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 RS(1)PILLPK 69.721 0.0099879 269640000 199160 115130 176780 386330 362240 159610 245320 154750 234080 546550 TRUE FALSE FALSE 243462.4549 128593.452 242178.2784 407434.2297 326174.1137 167966.9328 192905.3779 116797.3199 281057.7089 410305.1435 0.593369249 0.31340931 0.590239441 0.993002979 0.794954972 0.409370771 0.470151011 0.284659653 0.684996797 1 18.64633771 -8.016391472 24.27992616 1.000000019 0.55900803 0.304902895 0.202990471 965.9897558 1430876.744 0.216394785 0.055872893 9.63E-09 8.016391472 -0.440991989 RS(ph)PILLPK ddPTM_HeLa_A486_30min_R1 2 RSPILLPK 8 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 RS(1)PILLPK;RS(1)PILLPK ; 82.171 0.004411 749330000 404810 815100 635270 397420 1045280 1005960 1031720 1139640 697270 656560 TRUE FALSE FALSE 376434.9094 750508.5075 881263.5571 925213.8445 914171.2356 881854.8831 773572.7436 880168.8502 757709.925 492153.1025 0.764873588 1.524949256 1.790628877 1.87993094 1.857493595 1.791830385 1.571813201 1.788404555 1.53958173 1 18.90874766 -8.034738397 20.34846555 0.999999987 1.645450255 0.261045923 0.309554786 558.1945092 326971.3837 0.308197421 0.079576232 9.23E-09 8.034738397 0.645450269 RS(ph)PLGQK ddPTM_HeLa_A485_30min_R1 4 RSPLGQK 7 1 A0A2R8Y6S3;C9J167;P54278-3;P54278;Q68D20 A0A2R8Y6S3 PMS2;PMS2CL Mismatch repair endonuclease PMS2;Protein PMS2CL 1 0 RS(1)PLGQK;RS(1)PLGQK;RS(1)PLGQK;RS(1)PLGQK ;;; 121.93 0.0011085 2884460000 3405730 2594950 1380210 4611360 1707780 3266880 2817770 3686040 2788100 5283220 TRUE FALSE FALSE 4163322.889 2898406.829 1890807.114 4863266.92 1537747.427 3437928.785 2215730.42 2782032.911 3347646.096 3966210.484 1.049697918 0.730774839 0.476728888 1.226174692 0.387712007 0.866804422 0.558651748 0.701433502 0.844041462 1 21.91932981 -8.04111514 4.134202455 0.999739863 0.74203855 0.09291055 0.240023556 0.518217671 26.12387703 0.217153326 0.056978323 9.10E-09 8.04111514 -0.257701314 RS(ph)PLGQK ddPTM_HeLa_A486_30min_R1 4 RSPLGQK 7 1 A0A2R8Y6S3;C9J167;P54278-3;P54278;Q68D20 A0A2R8Y6S3 PMS2;PMS2CL Mismatch repair endonuclease PMS2;Protein PMS2CL 1 0 RS(1)PLGQK;RS(1)PLGQK;RS(1)PLGQK;RS(1)PLGQK ;;; 109.66 0.0017918 1229930000 1960020 1039640 1628350 895930 907190 3663530 1531810 1421280 2477530 2618890 TRUE FALSE FALSE 1822632.72 957255.1401 2258890.729 2085770.318 793401.771 3211560.917 1148534.936 1097685.57 2692284.295 1963102.898 0.928444821 0.487623517 1.150673625 1.062486495 0.404156996 1.635961579 0.585060996 0.559158448 1.371443289 1 20.90470436 -4.764058475 24.99996133 0.948344582 0.708034213 0.071451748 0.372183587 188.4977908 1799339.699 0.093668541 0.210457295 1.72E-05 4.764058475 -0.240310368 RS(ph)PLLK ddPTM_HeLa_A485_30min_R1 2 RSPLLK 6 1 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 RS(1)PLLK;RS(1)PLLK ; 105.1 0.0060572 350850000 820690 634190 591900 1080370 1193750 754490 1089750 1026490 692250 1428160 TRUE FALSE FALSE 1003249.659 708353.0038 810868.441 1139387.877 1074896.058 793993.9297 856916.0101 774741.718 831178.2253 1072145.995 0.935739781 0.660687077 0.756304127 1.062717095 1.002565008 0.740565122 0.7992531 0.722608415 0.775247241 1 20.03206994 -9.433876865 13.42210067 0.999989988 0.826816495 0.147774226 0.123567651 0 0 0.128829383 0.031245715 3.68E-10 9.433876865 -0.173173492 RS(ph)PPAPGLQPMR ddPTM_HeLa_A485_30min_R1 4 RSPPAPGLQPMR 12 1 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR ;;; 157.37 2.00E-08 5075410000 2480240 2880190 2992160 2892630 3796370 2924890 3756460 3493070 2850830 3793610 TRUE FALSE FALSE 3031960.831 3217003.166 4099084.498 3050647.052 3418390.073 3078032.718 2953861.634 2636389.106 3422965.432 2847932.843 1.064618093 1.129592355 1.439319227 1.07117942 1.200305717 1.0807954 1.037194975 0.925720251 1.201912271 1 21.4414837 -6.394620491 2.549249359 1.035114569 1.188328516 0.242803023 0.117056761 0.415034898 5.265805544 0.046657361 0.039659466 4.03E-07 6.394620491 0.153213947 RS(ph)PPAPGLQPMR ddPTM_HeLa_A486_30min_R1 4 RSPPAPGLQPMR 12 1 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR;RS(1)PPAPGLQPMR ;;; 149.22 8.33E-08 5278130000 2275850 2512350 2207620 870790 3069090 2410070 2831730 2911990 2302960 2721570 TRUE FALSE FALSE 2116324.668 2313262.236 3062469.586 2027243.127 2684136.114 2112740.067 2123201.203 2248993.445 2502582.427 2040071.158 1.037377868 1.133912524 1.501158219 0.993711969 1.315707104 1.035620772 1.040748601 1.102409314 1.226713303 1 20.96018804 -6.285423557 24.91025586 1.084977118 1.198577009 0.136561083 0.144712665 1639.535065 1702834.694 0.050426778 0.044496527 5.18E-07 6.285423557 0.113599891 RS(ph)PPEEPPDFCCPK ddPTM_HeLa_A486_30min_R1 2 RSPPEEPPDFCCPK 14 1 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 RS(1)PPEEPPDFCCPK;RS(1)PPEEPPDFCCPK ; 123.55 1.89E-05 522200000 441100 733390 430090 273020 660630 740900 860830 869170 512230 678170 TRUE FALSE FALSE 410181.1678 675273.5054 596632.3662 635604.3577 577767.6253 649495.2909 645441.2291 671278.9648 556630.5088 508351.8179 0.806884432 1.328358593 1.173660338 1.250323763 1.136550721 1.277649195 1.269674281 1.320500766 1.094971021 1 18.95546777 -4.251812907 24.75964799 1.218232034 0.806884179 0.583328639 0.100633158 736.9494945 1895418.148 0.023115828 0.287305759 5.60E-05 4.251812907 -0.411347855 RS(ph)PPWEP ddPTM_HeLa_A485_30min_R1 4 RSPPWEP 7 1 H0YAQ0;F5H8F7;Q9UBL3-2;Q9UBL3-3;Q9UBL3 H0YAQ0 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 1 0 RS(1)PPWEP;RS(1)PPWEP;RS(1)PPWEP;RS(1)PPWEP ;;; 119.21 0.0057468 2084020000 1568880 1847830 1815550 1714600 2054070 1664780 1979880 1833480 1709960 2241080 TRUE FALSE FALSE 1917871.943 2063917.645 2487197.496 1808264.256 1849559.579 1751945.307 1556862.464 1383816.155 2053133.287 1682420 1.139948374 1.226755296 1.478345179 1.074799548 1.099344741 1.041324584 0.925370873 0.822515279 1.220345269 1 20.68210647 -5.459180065 7.575772084 1.012808043 1.277494927 0.470068519 0.12540847 0.257319898 27.34479348 0.036278196 0.053676118 3.47E-06 5.459180065 0.264686884 RS(ph)PPWEP ddPTM_HeLa_A486_30min_R1 1 RSPPWEP 7 1 H0YAQ0;F5H8F7;Q9UBL3-2;Q9UBL3-3;Q9UBL3 H0YAQ0 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 1 0 RS(1)PPWEP 87.639 0.019691 959010000 450950 509800 388770 126940 432990 426300 457860 435910 372870 446930 TRUE FALSE FALSE 419340.7337 469401.5913 539312.1556 295522.7352 378680.3567 373707.4403 343298.5853 336662.8088 405190.6718 335015.819 1.251704278 1.401132617 1.609811015 0.882115764 1.130335749 1.115491923 1.024723508 1.004916156 1.209467281 1 18.35386969 -5.262945187 24.99999914 1.057359103 1.418907635 0.679506901 0.115920078 76.67570153 1273007.424 0.031897557 0.050298406 5.46E-06 5.262945187 0.361548531 RS(ph)PRPDHPGT(ph)PPHK ddPTM_HeLa_A485_30min_R1 1 RSPRPDHPGTPPHK 14 2 P30291 P30291 WEE1 Wee1-like protein kinase 2 0 RS(1)PRPDHPGT(1)PPHK 113.54 0.0010963 158350000 108860 93306 90157 127800 146840 119940 160560 135460 111410 189770 TRUE FALSE FALSE 133075.5314 104217.325 123509.826 134781.3904 132220.094 126219.8729 126255.0443 102238.2226 133768.9651 142463.8315 0.934100467 0.731535324 0.866955667 0.946074446 0.928095873 0.885978368 0.886225248 0.717643359 0.938967903 1 17.12023617 -4.98934298 24.97684689 0.88999726 0.824424796 0.085711532 0.083359664 521.6087565 1222474.185 0.021561738 0.044816403 1.02E-05 4.98934298 -0.065572463 RS(ph)PRPDHPGT(ph)PPHK ddPTM_HeLa_A486_30min_R1 4 RSPRPDHPGTPPHK 14 2 P30291 P30291 WEE1 Wee1-like protein kinase 2 0 RS(1)PRPDHPGT(1)PPHK;RS(1)PRPDHPGT(1)PPHK;RS(1)PRPDHPGT(1)PPHK;RS(1)PRPDHPGT(1)PPHK ;;; 128.67 0.00011862 282489000 357214 351459 235260 155496 368059 375430 414759 415536 296755 412755 TRUE FALSE FALSE 332175.1433 323608.1088 326358.9725 362002.5463 321893.6082 329113.2637 310981.9113 320927.5239 322477.9623 309398.4614 1.073616015 1.045926691 1.054817697 1.170020512 1.040385291 1.063719781 1.005117834 1.037262831 1.042273969 1 18.2391065 -6.398747747 2.16391495 1.025275657 1.080371284 0.341663769 0.036203903 0.405624993 3.740177326 0.015420446 0.012945217 3.99E-07 6.398747747 0.055095626 RS(ph)PRPDHPGTPPHK ddPTM_HeLa_A485_30min_R1 4 RSPRPDHPGTPPHK 14 2 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK;RS(0.999)PRPDHPGT(0.001)PPHK ;;; 91.475 0.00050448 284466000 112695 110153 103813 132603 146038 122571 155003 151016 122769 183692 TRUE FALSE FALSE 137763.614 123034.4351 142217.7487 139846.7661 131497.9439 128988.628 121885.3428 113979.0892 147407.6122 137900.965 0.999003988 0.892194156 1.031303506 1.014110134 0.953567975 0.935371468 0.88386142 0.826528583 1.068938221 1 17.07327303 -6.049882195 3.899655783 0.928976917 0.981323533 0.05291966 0.070079698 0.554427426 17.34923733 0.023450751 0.024422347 8.91E-07 6.049882195 0.052346615 RS(ph)PRPDHPGTPPHK ddPTM_HeLa_A486_30min_R1 3 RSPRPDHPGTPPHK 14 2 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK;RS(1)PRPDHPGTPPHK ;; 123.14 1.28E-05 198872000 180703 176078 129897 71634 191687 175848 207448 208723 150561 192993 TRUE FALSE FALSE 168036.6529 162124.938 180196.5972 166767.5722 167643.829 154153.6617 155542.3162 161201.3293 163611.7487 144666.2966 1.161546654 1.120682162 1.245601784 1.152774185 1.158831276 1.065581032 1.075180051 1.114297753 1.130959681 1 17.14236933 -6.183569717 5.087860053 1.084318676 1.169905646 0.514454806 0.04381743 0.202320489 9.402215211 0.014635836 0.014574721 6.55E-07 6.183569717 0.08558697 RS(ph)PS(ph)LER ddPTM_HeLa_A486_30min_R1 1 RSPSLER 7 1 Q9NRR4;Q9NRR4-3;Q9NRR4-4 Q9NRR4 DROSHA Ribonuclease 3 2 0 RS(1)PS(1)LER 63.046 0.014816 2932600000 1336800 1647700 1298200 565680 1688900 1548700 1605000 1617800 1404000 1512400 TRUE FALSE FALSE 1243097.223 1517130.251 1800897.807 1316931.628 1477062.414 1357637.14 1203412.024 1249462.256 1525699.85 1133685.196 1.096510061 1.338228863 1.588534289 1.161637845 1.302885862 1.197543326 1.061504577 1.102124523 1.345787928 1 20.11258865 -6.213148689 1.695429905 1.135431827 1.321371252 0.221524751 0.147391381 0.574354162 3.271166728 0.062688124 0.059185 6.12E-07 6.213148689 0.185939426 RS(ph)PS(ph)PAPPPR ddPTM_HeLa_A485_30min_R1 1 RSPSPAPPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RS(1)PS(1)PAPPPR 49.724 0.022167 670990000 76742 110510 117290 120130 189500 128140 139180 118900 134680 162980 TRUE FALSE FALSE 93812.99314 123433.1832 160680.4518 126692.3977 170632.7146 134849.2123 109443.056 89739.58857 161709.0406 122352.0854 0.766746172 1.008835957 1.313262878 1.035473954 1.394604056 1.102140693 0.894492772 0.73345369 1.321669672 1 16.90067917 -6.676049869 7.557704122 0.965647414 1.119886481 0.061356073 0.210731395 0.570983836 43.29899085 0.081846731 0.063109847 2.11E-07 6.676049869 0.154239067 RS(ph)PS(ph)PAPPPR ddPTM_HeLa_A486_30min_R1 1 RSPSPAPPPR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RS(1)PS(1)PAPPPR 67.095 0.0072142 513400000 184440 217220 221640 87188 302280 211990 246260 269610 167710 210660 TRUE FALSE FALSE 171511.7084 200006.6961 307464.9437 202978.0702 264365.2238 185836.8292 184643.1433 208225.6885 182247.2378 157909.3648 1.086140196 1.266591733 1.94709759 1.285408693 1.674157983 1.176857556 1.169298246 1.31864053 1.154125584 1 17.26873721 -6.297307452 23.612142 1.184043883 1.459849265 0.27384738 0.23322269 455.8394201 300079.5544 0.083125949 0.073314151 5.04E-07 6.297307452 0.275805383 RS(ph)PS(ph)PKPTK ddPTM_HeLa_A486_30min_R1 1 RSPSPKPTK 9 2 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 RS(0.98)PS(0.692)PKPT(0.327)K 79.466 0.03138 99706000 204120 109420 151440 239750 128950 831800 316390 302080 381630 557890 TRUE FALSE FALSE 189812.2421 100749.1607 210081.6237 558150.1163 112775.8886 729180.9731 237225.8756 233302.9784 414709.9957 418190.7127 0.453889186 0.240916782 0.502358415 1.334678412 0.269675737 1.743656544 0.567267202 0.55788656 0.991676723 1 18.6738015 -5.019161396 22.19716168 0.898848096 0.353461276 0.273273432 0.395892509 218.4311404 253041.2083 0.10254392 0.182058128 9.57E-06 5.019161396 -0.54538682 RS(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A486_30min_R1 1 RSPSPSPTPEAK 12 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 RS(1)PS(0.994)PS(0.006)PTPEAK 146.3 8.02E-08 210010000 201900 187050 115240 97696 222350 234020 259830 260570 158570 273720 TRUE FALSE FALSE 187747.8526 172227.4768 159864.0142 227441.2253 194460.7897 205148.9917 194817.7858 201243.8992 172314.9753 205178.7304 0.915045396 0.839402196 0.779145158 1.108502937 0.947762906 0.99985506 0.949502833 0.980822422 0.839828646 1 17.64652166 -5.240191533 24.99918527 0.973198665 0.844018048 0.427000296 0.069328909 788.1407514 927286.9778 0.018493331 0.031992265 5.75E-06 5.240191533 -0.129180618 RS(ph)PS(ph)PYYSR ddPTM_HeLa_A485_30min_R1 4 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RS(0.969)PS(0.398)PY(0.257)Y(0.005)S(0.37)R;RS(0.653)PS(0.953)PY(0.277)Y(0.038)S(0.078)R;RS(0.977)PS(0.955)PY(0.026)Y(0.001)S(0.041)R;RS(0.66)PS(0.786)PY(0.366)Y(0.025)S(0.163)R ;;; 108.72 0.00047186 17341790000 9014980 11675540 11185140 10672080 14111140 11069420 13206070 13845880 11196040 13335910 TRUE FALSE FALSE 11020331.2 13040892.84 15322988.74 11255068.71 12706185.35 11648997.71 10384485.26 10450156.22 13442982.53 10011513.07 1.100765801 1.302589604 1.530536757 1.124212557 1.269157346 1.163560157 1.037254328 1.043813872 1.342752334 1 23.25515669 -6.124232364 1.548925735 1.110218104 1.291580608 0.218128638 0.140370958 0.594993316 2.868630618 0.059454204 0.059986275 7.51E-07 6.124232364 0.181362505 RS(ph)PS(ph)PYYSR ddPTM_HeLa_A486_30min_R1 3 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RS(0.855)PS(0.893)PY(0.042)Y(0.004)S(0.207)R;RS(0.804)PS(0.862)PY(0.225)Y(0.013)S(0.097)R;RS(0.92)PS(0.632)PY(0.326)Y(0.022)S(0.1)R ;; 92.781 0.0014637 12910700000 11366700 12801100 10645100 4251200 15268000 12083500 13341800 13641600 10674400 12191900 TRUE FALSE FALSE 10569953.03 11786694.22 14767167.81 9897008.444 13352945.07 10592760.63 10003540.52 10535705.47 11599665.59 9138968.884 1.156580481 1.289718169 1.615846163 1.082945852 1.461099741 1.159076123 1.094602756 1.152833061 1.269253209 1 23.12359997 -6.409142469 8.371592902 1.139834371 1.32238561 0.274180305 0.151587727 0.43427102 29.15487289 0.052205584 0.045966562 3.90E-07 6.409142469 0.182551239 RS(ph)PS(ph)SEDDRDER ddPTM_HeLa_A486_30min_R1 1 RSPSSEDDRDER 12 2 Q9BVA0 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 2 0 RS(0.996)PS(0.838)S(0.166)EDDRDER 93.495 0.0065797 228560000 287290 332160 241320 109040 255980 305290 315530 286050 300520 345680 TRUE FALSE FALSE 267152.4546 305838.4319 334765.5668 253850.6306 223872.6015 267626.4238 236581.0567 220922.6594 326569.3156 259119.478 1.031001053 1.180298889 1.29193517 0.97966634 0.863974423 1.032830206 0.913019193 0.852589937 1.260304004 1 17.98325794 -5.320144594 11.8191806 0.973662654 1.16895905 0.311210002 0.122900269 1.254964575 251.2524006 0.034004441 0.050455588 4.78E-06 5.320144594 0.195296396 RS(ph)PSAPVCK ddPTM_HeLa_A486_30min_R1 1 RSPSAPVCK 9 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 RS(0.53)PS(0.47)APVCK 53.967 0.025841 201260000 286730 263630 202030 112690 291500 283230 338860 323890 241420 370130 TRUE FALSE FALSE 266631.7077 242738.9987 280261.4266 262348.015 254937.3519 248287.9623 254073.6439 250147.3175 262346.48 277447.0389 0.961018394 0.874902106 1.010143874 0.945578717 0.918868527 0.894902189 0.915755472 0.901603847 0.945573184 1 18.08185288 -5.747909154 12.61564984 0.922118052 0.947147367 0.027844123 0.041486284 1.999985465 1848.274873 0.011990757 0.015129941 1.79E-06 5.747909154 0.025029315 RS(ph)PSLSSK ddPTM_HeLa_A485_30min_R1 4 RSPSLSSK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RS(0.992)PS(0.008)LSSK;RS(1)PSLSSK;RS(1)PSLSSK;RS(0.999)PS(0.001)LSSK ;;; 94.465 0.0021314 291780000 704750 835260 688520 916770 901890 860940 1063410 1121150 786870 1187190 TRUE FALSE FALSE 861519.2061 932936.3912 943232.1997 966850.8237 812094.6649 906017.4871 836203.7662 846186.2046 944787.5914 891245.3816 0.966646475 1.046778374 1.058330533 1.08483123 0.911190881 1.016574678 0.938241907 0.949442457 1.060075722 1 19.76546317 -5.749352383 24.99858817 0.97654179 1.041062041 0.267717823 0.048360259 291.1616162 602183.9865 0.014103187 0.018065372 1.78E-06 5.749352383 0.064520251 RS(ph)PSLSSK ddPTM_HeLa_A486_30min_R1 2 RSPSLSSK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RS(0.995)PS(0.005)LSSK;RS(0.997)PS(0.003)LSSK ; 76.17 0.0070992 476670000 618830 551660 378850 242077 510530 618820 661060 585690 540500 690470 TRUE FALSE FALSE 575453.2126 507944.4525 525550.866 563567.4899 446494.5669 542476.2801 495655.796 452341.1725 587350.9752 517571.8178 1.111832586 0.981398977 1.015416311 1.088868193 0.862671713 1.048117887 0.957656076 0.873967934 1.134820241 1 18.98139954 -1.556745437 1.267079451 0.988869151 150.1318587 0.143056807 0.081471602 2995.869972 5.346075633 0.022364372 1298327.967 0.027749462 1.556745437 149.1429896 RS(ph)PSPLGTSVR ddPTM_HeLa_A485_30min_R1 1 RSPSPLGTSVR 11 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 RS(0.695)PS(0.305)PLGTSVR 90.707 0.0015839 970650000 113320 123540 169450 93779 172660 142250 180570 207850 88979 103600 TRUE FALSE FALSE 138527.6431 137986.9283 232136.6064 98901.90931 155469.3642 149697.99 141989.7444 156874.4616 106836.2691 77774.42662 1.781146439 1.774194094 2.984742113 1.271650768 1.998977954 1.924771375 1.825661089 2.017044271 1.373668361 1 16.24700823 -7.930404084 3.259091379 1.004451479 1.951408599 0.378587797 0.402590778 0.222227462 4.840726922 0.375128804 0.100244039 1.17E-08 7.930404084 0.94695712 RS(ph)PSPLGTSVR ddPTM_HeLa_A486_30min_R1 2 RSPSPLGTSVR 11 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 RS(0.692)PS(0.308)PLGTSVR;RS(0.555)PS(0.445)PLGTSVR ; 91.812 0.0014929 1254010000 250590 290710 203802 45166.2 371290 253270 249000 284430 225091 152348 TRUE FALSE FALSE 233024.935 267673.0809 282719.5924 105149.1962 324719.3461 222024.1225 186697.5663 219671.4981 244602.0691 114199.0692 2.040515187 2.343916485 2.475673352 0.920753531 2.843450024 1.944185045 1.634843153 1.923583963 2.141891969 1 16.80119137 -10.91551388 0.289685074 8.77E-11 2.126786031 0.287487383 0.487197574 40.30701673 1.843521577 28.68022895 0.550937991 1.21E-11 10.91551388 2.126786031 RS(ph)PSPYYSR ddPTM_HeLa_A485_30min_R1 2 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 0 RS(0.978)PS(0.022)PYYSR;RS(0.525)PS(0.475)PYYSR ; 92.039 0.0018974 509420000 52415 78277 79296 57157 75324 75914 76792 96544 59336 73797 TRUE FALSE FALSE 64074.53592 87430.81423 108630.8902 60279.34218 67824.47808 79888.73965 60384.76187 72866.43262 71244.19094 55400.76603 1.156564079 1.57815172 1.96081928 1.088059724 1.224251629 1.442015073 1.08996258 1.315260381 1.285978445 1 15.7576183 -5.29552635 24.99970264 1.225336373 1.566476074 0.362696296 0.216871617 679.2070019 498135.3439 0.061126869 0.090671009 5.06E-06 5.29552635 0.341139701 RS(ph)PSPYYSR ddPTM_HeLa_A486_30min_R1 2 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 0 RS(1)PSPYYSR;RS(0.998)PS(0.002)PYYSR ; 93.623 0.0017453 322830000 55664 59081 60746 17348.5 71776 52871 67029 56474 45399 63713 TRUE FALSE FALSE 51762.24105 54399.20639 84268.47803 40388.18474 62773.1848 46348.31357 50257.63524 43616.10302 49334.22187 47758.8501 1.083825112 1.139039283 1.764457852 0.84566912 1.314378061 0.970465442 1.052320882 0.913256976 1.032985965 1 15.54348048 -6.054897323 1.215009423 0.984042365 1.267851898 0.203765766 0.222363739 0.719982615 2.214945147 0.100731025 0.109453528 8.81E-07 6.054897323 0.283809532 RS(ph)PSS(ph)EDDRDER ddPTM_HeLa_A485_30min_R1 1 RSPSSEDDRDER 12 2 Q9BVA0 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 2 0 RS(0.977)PS(0.502)S(0.522)EDDRDER 109.42 0.0016411 225980000 218110 239580 259620 282500 253170 240540 275290 229320 275980 334960 TRUE FALSE FALSE 266627.817 267596.7969 355664.2417 297932.2597 227963.5059 253134.3025 216472.0426 173078.9104 331366.6546 251460.6365 1.060316321 1.064169727 1.414393309 1.184806751 0.90655742 1.006655777 0.860858565 0.688294251 1.317767501 1 17.93997305 -5.755194597 24.55078646 0.944810448 1.189258745 0.268411949 0.174143126 149.379905 587268.5107 0.051756628 0.065100255 1.76E-06 5.755194597 0.244448297 RS(ph)PSS(ph)EDDRDER ddPTM_HeLa_A486_30min_R1 1 RSPSSEDDRDER 12 2 Q9BVA0 Q9BVA0 KATNB1 Katanin p80 WD40 repeat-containing subunit B1 2 0 RS(0.995)PS(0.455)S(0.55)EDDRDER 92.307 0.0070581 255420000 327310 351120 253380 109610 301540 345900 325170 311110 283170 355110 TRUE FALSE FALSE 304367.2592 323295.9724 351495.5218 255177.6194 263718.0415 303226.3749 243809.0267 240277.0445 307715.4036 266188.1446 1.143429057 1.214539336 1.320477748 0.958636305 0.990720461 1.13914305 0.915927443 0.9026587 1.156007169 1 18.02208679 -5.269243469 24.97403676 1.005738705 1.224987778 0.560972735 0.087991672 414.9166816 1327783.049 0.024854182 0.037647948 5.38E-06 5.269243469 0.219249073 RS(ph)PTDSDVSLDSEDSGAK ddPTM_HeLa_A485_30min_R1 1 RSPTDSDVSLDSEDSGAK 18 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 RS(0.791)PT(0.202)DS(0.008)DVSLDSEDSGAK 136.64 4.39E-09 0 146040 142600 125310 201760 234170 156190 217850 238010 166250 255590 TRUE FALSE FALSE 178526.0942 159275.8295 171667.3836 212781.6379 210855.2126 164367.8669 171304.5678 179637.6743 199614.8501 191876.1168 0.93042374 0.830097212 0.894678225 1.108953222 1.098913279 0.856635363 0.89278734 0.936216958 1.040331926 1 17.54981562 -5.027600623 24.48720835 0.984219188 0.875792244 0.265536809 0.080078245 783.8670659 695445.3879 0.023873428 0.041495336 9.38E-06 5.027600623 -0.108426945 RS(ph)PTEDFR ddPTM_HeLa_A485_30min_R1 3 RSPTEDFR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RS(1)PTEDFR;RS(1)PTEDFR;RS(1)PTEDFR ;; 117.52 0.00052067 1081600000 628530 771860 738060 704740 763580 643980 729250 655280 672980 867040 TRUE FALSE FALSE 768344.3301 862122.3127 1011099.107 743238.1617 687555.2941 677697.797 573439.7801 494571.5526 808040.9131 650902.8847 1.180428522 1.324502215 1.553379361 1.141857225 1.056310104 1.041165761 0.880991302 0.759823876 1.241415474 1 19.31208278 -5.614939705 2.653532 0.975654779 1.350334225 0.537537247 0.145852478 0.204596207 2.917013815 0.046488903 0.064234741 2.43E-06 5.614939705 0.374679446 RS(ph)PTEDFR ddPTM_HeLa_A486_30min_R1 2 RSPTEDFR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RS(1)PTEDFR;RS(1)PTEDFR ; 88.056 0.0025201 846350000 1012188 1159017 867580 319084 946734 920776 909989 932706 971442 963810 TRUE FALSE FALSE 941238.8481 1067172.272 1203530.211 742843.6776 827985.7938 807180.0189 682300.1273 720349.2046 1055647.375 722465.7026 1.302814576 1.477125167 1.665864838 1.028206149 1.146055502 1.117257215 0.944404869 0.997070452 1.461172995 1 19.46256958 -5.272344339 24.98670152 1.095303721 1.481453894 0.552753673 0.157753396 508.7601598 1165729.058 0.044327855 0.066484955 5.34E-06 5.272344339 0.386150173 RS(ph)PTKSSLDYR ddPTM_HeLa_A485_30min_R1 2 RSPTKSSLDYR 11 2 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 RS(0.934)PT(0.039)KS(0.013)S(0.013)LDYR;RS(0.892)PT(0.036)KS(0.036)S(0.036)LDYR ; 54.09 0.029504 387080000 116484 478190 190609 77294 457960 747280 993230 3609100 204976 180008 TRUE FALSE FALSE 142395.4639 534110.1608 261123.201 81516.3755 412363.8944 786406.4253 781018.2966 2723962.566 246112.803 135135.3184 1.053725004 3.95240983 1.932309067 0.603220361 3.05148868 5.819399655 5.779527556 20.15729565 1.821232273 1 17.04404526 -6.522809616 2.05255701 8.827737212 2.091197789 0.167576863 5.030511358 0.44587649 3.774830228 2.151581477 1.650217633 3.00E-07 6.522809616 -6.736539423 RS(ph)PTS(ph)SPTPQR ddPTM_HeLa_A485_30min_R1 1 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 RS(0.985)PT(0.056)S(0.942)S(0.015)PT(0.002)PQR 101.01 0.00055638 2827000000 333670 369320 389630 396290 528460 373660 490930 444830 406030 543840 TRUE FALSE FALSE 407893.7404 412508.7613 533770.3509 417938.3192 475844.6669 393224.2598 386038.795 335734.745 487516.4967 408270.6966 0.9990767 1.010380526 1.307393245 1.023679443 1.165512663 0.96314593 0.945546174 0.822333682 1.194101121 1 18.6391665 -6.277361359 23.67948235 0.971453764 1.103310051 0.184778339 0.120301455 641.1058628 953460.7097 0.041666561 0.036885379 5.28E-07 6.277361359 0.131856287 RS(ph)PTSS(ph)PTPQR ddPTM_HeLa_A485_30min_R1 1 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 RS(0.989)PT(0.012)S(0.268)S(0.607)PT(0.124)PQR 112.68 0.00020457 3791600000 450280 515020 565930 532420 715880 489020 656810 622050 541040 686830 TRUE FALSE FALSE 550443.2326 575247.1089 775291.0573 561504.7564 644604.4736 514624.331 516477.1779 469491.2622 649621.7653 515615.9212 1.067545066 1.1156504 1.503621253 1.088998096 1.250164022 0.998076882 1.001670345 0.910544541 1.259894698 1 18.97593729 -6.263612777 24.9602995 1.026423388 1.210344795 0.265220718 0.142032272 259.1051031 2975671.284 0.048682317 0.045025689 5.45E-07 6.263612777 0.183921407 RS(ph)PTSS(ph)PTPQR ddPTM_HeLa_A486_30min_R1 1 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 RS(0.67)PT(0.38)S(0.374)S(0.568)PT(0.007)PQR 65.563 0.0089008 73617000 84641 98576 88953 30331 120360 92508 92864 102990 82976 93583 TRUE FALSE FALSE 78708.10299 90764.47875 123397.9838 70612.10084 105263.3265 81095.30351 69628.44498 79541.42526 90168.42649 70149.20768 1.122009864 1.293877461 1.759078797 1.006598694 1.500563299 1.156040192 0.992576357 1.133889147 1.285380541 1 16.09813919 -6.453708623 8.628234439 1.108479244 1.338647478 0.231407121 0.204774036 0.579846267 68.15982781 0.071295453 0.062694565 3.52E-07 6.453708623 0.230168235 RS(ph)PTSSPTPQR ddPTM_HeLa_A485_30min_R1 2 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 1 0 RS(0.916)PT(0.037)S(0.037)S(0.01)PT(0.001)PQR;RS(0.985)PT(0.014)S(0.001)SPTPQR ; 58.972 0.018782 687120000 263100 249140 256920 289320 336400 282910 372720 351520 268980 419730 TRUE FALSE FALSE 321625.6873 278274.7558 351965.3993 305124.819 302906.8348 297722.7301 293085.3272 265309.1688 322961.8188 315099.0356 1.020713017 0.883134267 1.116999291 0.968345773 0.961306766 0.944854463 0.930137176 0.84198661 1.024953371 1 18.26544581 -5.777575231 2.778214779 0.939180932 0.999553641 0.096927192 0.070044036 0.563671616 8.920019538 0.022269959 0.027668789 1.67E-06 5.777575231 0.06037271 RS(ph)PTSSPTPQR ddPTM_HeLa_A486_30min_R1 1 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 1 0 RS(0.976)PT(0.017)S(0.005)S(0.002)PT(0.001)PQR 46.318 0.034756 74151000 63274 65801 48849 31263 71205 63141 74800 90021 55850 81279 TRUE FALSE FALSE 58838.81935 60586.68912 67764.64102 72781.84394 62273.80494 55351.30539 56084.24885 69525.18344 60691.12297 60926.20936 0.965739047 0.994427353 1.112241213 1.194590057 1.022118487 0.908497443 0.920527462 1.14113752 0.996141457 1 15.89477536 -5.990681329 24.99777105 0.993955129 1.070273127 0.149049451 0.082640541 430.233492 1154112.933 0.028069236 0.031787411 1.02E-06 5.990681329 0.076317999 RS(ph)PTVEPSTLPR ddPTM_HeLa_A485_30min_R1 1 RSPTVEPSTLPR 12 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RS(0.982)PT(0.018)VEPSTLPR 75.376 0.0042921 0 107000 177490 155160 111330 194270 138080 141700 155600 121520 165500 TRUE FALSE FALSE 130801.7809 198245.9115 212560.1407 117411.676 174927.7967 145309.6553 111424.6374 117438.856 145907.9494 124243.8958 1.052782352 1.595618926 1.71082965 0.945009614 1.407938761 1.169551666 0.896821825 0.945228377 1.174367146 1 16.92281545 -6.107811317 1.072354477 1.001161005 1.413446019 0.317090985 0.225523153 0.582660377 1.418054072 0.116321689 0.122083742 7.80E-07 6.107811317 0.412285014 RS(ph)PVPAQIAITVPK ddPTM_HeLa_A485_30min_R1 4 RSPVPAQIAITVPK 14 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK ;;; 115.15 0.00010655 11345090000 9783560 10218370 8515920 12369700 13027400 11612500 15274300 15491000 10482920 16637800 TRUE FALSE FALSE 11959879.17 11413319.48 11666313.18 13045425.39 11730346.31 12220512.54 12010821.03 11691807.96 12586745.89 12490302.66 0.957533176 0.913774453 0.934029663 1.044444298 0.939156291 0.978400034 0.961611688 0.936070829 1.007721449 1 23.5743051 -1 0.249467183 0.983622964 0.673182379 0.140561446 0.03547695 109.9212798 1.492954953 0.046793096 14.31284802 0.1 1 -0.310440585 RS(ph)PVPAQIAITVPK ddPTM_HeLa_A486_30min_R1 4 RSPVPAQIAITVPK 14 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK ;;; 124.35 1.80E-05 13897130000 11745300 11679000 7498640 4694300 12259600 12379400 14352800 14042400 9910920 14218800 TRUE FALSE FALSE 10922015.12 10753513.51 10402314.23 10928567.64 10721886.65 10852155.49 10761577.63 10845252.06 10770006.53 10658319.93 1.024740784 1.008931386 0.97598067 1.025355563 1.005964047 1.018186315 1.00968799 1.017538611 1.010478818 1 23.34547671 RS(ph)PVSTRPLPSASQK ddPTM_HeLa_A485_30min_R1 2 RSPVSTRPLPSASQK 15 2 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 RS(0.845)PVS(0.14)T(0.016)RPLPSASQK;RS(0.972)PVS(0.027)T(0.001)RPLPSASQK ; 122.22 3.00E-05 954930000 416730 396910 377710 489660 659800 521300 658520 654660 483150 673080 TRUE FALSE FALSE 509430.1508 443325.1718 517440.6468 516408.8859 594107.9953 548594.4619 517821.8224 494103.6085 580113.7733 505293.5431 1.008186544 0.87736164 1.024039697 1.021997793 1.175768033 1.085694582 1.024794062 0.977854586 1.148072801 1 18.94676222 -5.036080933 2.978354633 1.065115666 0.943155192 0.324101237 0.066597612 0.283823491 5.03864619 0.018648139 0.039913089 9.20E-06 5.036080933 -0.121960475 RS(ph)PVSTRPLPSASQK ddPTM_HeLa_A486_30min_R1 3 RSPVSTRPLPSASQK 15 2 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 RS(1)PVSTRPLPSASQK;RS(1)PVSTRPLPSASQK;RS(1)PVSTRPLPSASQK ;; 192.25 1.27E-18 1681350000 820250 867550 556600 346133 968980 862330 952560 1069690 679700 944900 TRUE FALSE FALSE 762754.7108 798802.1784 772130.4263 805815.1166 847441.493 755944.4921 714219.4128 826144.9382 738616.9433 708290.8897 1.076894708 1.1277883 1.090131805 1.137689512 1.196459682 1.067279705 1.008370181 1.166392156 1.042815818 1 19.43398246 -6.473165153 24.86844775 1.063912521 1.125312077 0.301326412 0.051884599 506.4064362 253321.9239 0.018216355 0.016065123 3.36E-07 6.473165153 0.061399556 RS(ph)QGSS(ph)QFR ddPTM_HeLa_A485_30min_R1 1 RSQGSSQFR 9 1 Q15172 Q15172 PPP2R5A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform 2 0 RS(0.823)QGS(0.554)S(0.623)QFR 47.915 0.012933 0 178870 271590 250500 226310 341270 264290 347850 391200 252970 324060 TRUE FALSE FALSE 218659.0144 303350.088 343170.3742 238672.7423 307291.9605 278127.8157 273529.0058 295257.5866 303738.7586 243277.8059 0.898803792 1.24692874 1.410611103 0.981070761 1.263131914 1.143251908 1.124348375 1.213664294 1.248526381 1 17.89224518 -9.269494568 10.59304463 0.999915131 1.175706438 0.117702513 0.138884359 0 0 0.12977907 0.031476048 5.38E-10 9.269494568 0.175791308 RS(ph)RS(ph)HS(ph)DNDRFK ddPTM_HeLa_A485_30min_R1 1 RSRSHSDNDRFK 12 3 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 3 0 RS(1)RS(1)HS(1)DNDRFK 74.141 0.0071604 1199000000 431710 480940 343660 854600 1072500 619280 937890 1378800 517160 1404700 TRUE FALSE FALSE 527742.4001 537181.7494 470794.1349 901284.634 965718.1342 651704.5432 737502.1396 1040647.138 620949.2683 1054534.142 0.500450748 0.509401951 0.446447504 0.854675632 0.915777021 0.618002317 0.69936298 0.986831149 0.58883752 1 20.00817437 -5.260008552 24.98274262 0.800434726 0.487830242 0.54739068 0.13469353 97.05976201 1694681.491 0.036263077 0.058708742 5.50E-06 5.260008552 -0.312604484 RS(ph)RS(ph)HS(ph)DNDRFK ddPTM_HeLa_A486_30min_R1 1 RSRSHSDNDRFK 12 3 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 3 0 RS(1)RS(1)HS(1)DNDRFK 61.732 0.019314 1064300000 495890 471960 433220 575080 892730 751390 891350 864720 456420 767350 TRUE FALSE FALSE 461130.6718 434560.1708 600974.386 1338815.303 780755.479 658691.1414 668324.8023 667842.1327 495982.8531 575200.5654 0.80168675 0.755493296 1.044808406 2.327562564 1.357362155 1.145150372 1.161898723 1.16105959 0.862278104 1 19.13370557 -7.447725894 1.629474886 0.938329865 1.256831106 0.068624225 0.411927964 1.26328059 5.941054781 0.395824478 0.134935151 3.57E-08 7.447725894 0.31850124 RS(ph)RS(ph)HSDNDRFK ddPTM_HeLa_A485_30min_R1 1 RSRSHSDNDRFK 12 3 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 RS(0.881)RS(0.907)HS(0.213)DNDRFK 54.598 0.024702 114010000 46578 68337 68104 56381 101240 79267 100750 153220 62884 94314 TRUE FALSE FALSE 56939.11541 76328.4177 93298.50364 59460.95127 91160.19012 83417.29755 79223.93945 115642.5548 75504.24199 70803.25552 0.804187816 1.078035426 1.317714884 0.839805329 1.287514104 1.178156243 1.118930745 1.633294315 1.066395061 1 16.11152808 -5.794034537 24.99986759 1.239162706 1.036784048 0.176160457 0.208908626 333.4425054 255742.4084 0.063778196 0.072322665 1.61E-06 5.794034537 -0.202378658 RS(ph)RS(ph)HSDNDRFK ddPTM_HeLa_A486_30min_R1 1 RSRSHSDNDRFK 12 3 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 RS(0.993)RS(0.959)HS(0.048)DNDRFK 58.83 0.019228 37593000 28365 23600 27609 27636 64135 42630 55324 58625 25859 40845 TRUE FALSE FALSE 26376.75998 21729.85005 38299.94419 64338.00465 56090.59026 37370.74403 41481.35004 45277.36727 28100.47894 30617.14614 0.861502893 0.709728136 1.250931227 2.101371707 1.831999299 1.220582214 1.354840515 1.478823894 0.917802032 1 14.90205219 -4.883391152 4.808280216 1.457190762 0.792292428 0.343743825 0.337750453 0.216690208 8.087032407 0.093664106 0.206037548 1.31E-05 4.883391152 -0.664898335 RS(ph)RS(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 2 RSRSHSDNDRPNCSWNTQYSSAYYTSR 27 3 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 RS(0.86)RS(0.815)HS(0.184)DNDRPNCS(0.14)WNTQYSSAYYTSR;RS(0.836)RS(0.868)HS(0.295)DNDRPNCS(0.001)WNTQYSSAYYTSR ; 97.077 0.0012316 606390000 114940 123490 105982 187188 187628 153117 221060 242928 121230 276930 TRUE FALSE FALSE 140508.0065 137931.0813 145189.1521 197413.6065 168947.0975 161133.9694 173828.7251 183349.5271 145559.749 207896.4475 0.675855736 0.663460501 0.698372453 0.949576622 0.812650238 0.775068412 0.836131291 0.881927177 0.700155057 1 17.66550558 -1.006530358 0.119681507 0.991015383 5.38E-36 0.422083711 0.085170342 102.8141391 0.84938474 0.621356885 16.979301 0.098507578 1.006530358 -0.991015383 RS(ph)RS(ph)PLLNDRR ddPTM_HeLa_A485_30min_R1 3 RSRSPLLNDRR 11 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 RS(1)RS(1)PLLNDRR;RS(1)RS(1)PLLNDRR;RS(1)RS(1)PLLNDRR ;; 79.393 0.0044368 812880000 71495 95580 91703 66872 124337 87352 104164 124302 79488 85658 TRUE FALSE FALSE 87398.8161 106757.2496 125627.7558 70525.04803 111957.5717 91925.61565 81908.51046 93816.7396 95440.51249 64305.03702 1.359128618 1.66016932 1.953622323 1.096726653 1.741038912 1.429524341 1.273749527 1.458932985 1.484184084 1 15.97264413 -12.19489897 0.161951864 9.75E-18 1.661046495 0.318748018 0.226132628 79.85745188 1.267481624 28.2254222 1.006399116 6.38E-13 12.19489897 1.661046495 RS(ph)RS(ph)PLLNDRR ddPTM_HeLa_A486_30min_R1 2 RSRSPLLNDRR 11 3 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 RS(1)RS(1)PLLNDRR;RS(1)RS(1)PLLNDRR ; 105.02 0.00044189 424330000 46739 56920 57984 20149 66641 53756 60161 70664 42811 58067 TRUE FALSE FALSE 43462.83746 52409.4519 80436.95767 46907.89027 58282.26438 47124.13127 45108.08148 54575.34978 46521.89195 43526.64525 0.998534052 1.204077447 1.847993504 1.077682188 1.339001985 1.082650202 1.036332601 1.253837723 1.068814095 1 15.40961121 -6.263753264 24.39022606 1.100942128 1.307312263 0.173961786 0.221625677 284.4728397 2998557.791 0.077796501 0.071955877 5.45E-07 6.263753264 0.206370135 RS(ph)S(ph)DGSLSHEEDLAK ddPTM_HeLa_A485_30min_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 RS(0.821)S(0.89)DGS(0.28)LS(0.009)HEEDLAK 99.86 0.00026881 539570000 577400 519530 436060 738920 747860 603490 852530 889130 496620 1019200 TRUE FALSE FALSE 705840.638 580284.5142 597376.74 779285.3286 673400.4325 635087.8032 670380.001 671069.4734 596287.0787 765132.197 0.922508085 0.75841079 0.780749709 1.018497629 0.880109915 0.830036699 0.87616232 0.877063436 0.779325561 1 19.54534951 -11.28381815 2.370904466 1.666383329 0.858518323 0.251396664 0.073458609 5970545.646 1668080.386 21078530.17 0.018994934 5.20E-12 11.28381815 -0.807865005 RS(ph)S(ph)RSVEDDKEGHLVCR ddPTM_HeLa_A486_30min_R1 1 RSSRSVEDDKEGHLVCR 17 3 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BQG1 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 RS(0.733)S(0.785)RS(0.482)VEDDKEGHLVCR 121.21 1.93E-05 195820000 90370 98336 92855 90989 148580 153550 192470 189170 97358 156780 TRUE FALSE FALSE 84035.52967 90543.49723 128810.9427 211826.9903 129943.7109 134606.5622 144311.9703 146100.1206 105797.0698 117521.2675 0.71506657 0.770443505 1.096064954 1.802456651 1.10570379 1.145380449 1.227964719 1.243180265 0.900237651 1 16.84256234 -4.811999032 4.251931639 1.223429935 0.733948565 0.386694331 0.226854824 0.191616737 7.132040159 0.060811831 0.144660177 1.54E-05 4.811999032 -0.489481369 RS(ph)SDGS(ph)LSHEEDLAK ddPTM_HeLa_A485_30min_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 RS(0.64)S(0.566)DGS(0.793)LSHEEDLAK 110.67 1.42E-05 0 913230 1050400 815350 1145000 1190100 1062300 1408000 1487600 926880 1509200 TRUE FALSE FALSE 1116374.863 1173235.143 1116981.895 1207548.451 1071609.465 1117920.385 1107169.298 1122763.768 1112896.314 1132984.215 0.985340174 1.035526468 0.985875955 1.065812246 0.945829122 0.98670429 0.977215113 0.990979179 0.98226992 1 20.11169633 -5.775731373 24.99999246 0.980194584 1.017076227 0.345148241 0.025379836 261.7466735 457853.4768 0.007364503 0.008387886 1.68E-06 5.775731373 0.036881643 RS(ph)SDGSLSHEEDLAK ddPTM_HeLa_A485_30min_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RS(0.489)S(0.489)DGS(0.018)LS(0.003)HEEDLAK 172.3 2.11E-12 487990000 110790 118180 85079 126060 158270 142100 187480 190660 115530 215830 TRUE FALSE FALSE 135434.8533 132000.123 116553.2625 132946.3386 142512.0831 149540.1363 147423.3664 143900.3361 138715.8113 162027.5531 0.835875447 0.814677013 0.719342237 0.820516857 0.879554621 0.922930288 0.90986603 0.888122627 0.85612483 1 17.30587964 -5.764990347 3.005324471 0.907238437 0.789829845 0.610497923 0.044567028 0.177989042 3.312012527 0.014211004 0.017694267 1.72E-06 5.764990347 -0.117408592 RS(ph)SDGSLSHEEDLAK ddPTM_HeLa_A486_30min_R1 3 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RS(0.484)S(0.484)DGS(0.015)LS(0.016)HEEDLAK;RS(0.494)S(0.494)DGS(0.002)LS(0.01)HEEDLAK;RS(0.5)S(0.5)DGSLSHEEDLAK ;; 231.77 1.97E-34 1771530000 1544690 1559290 948970 232714 1745770 1522540 1914790 1901400 1227370 1559850 TRUE FALSE FALSE 1436415.208 1435726.182 1316436.598 541769.9527 1526799.248 1334704.495 1435689.289 1468492.727 1333759.42 1169253.407 1.228489221 1.227899934 1.125877924 0.46334691 1.305789864 1.14150148 1.227868382 1.255923411 1.140693208 1 20.1571562 RS(ph)SDPALIGLSTSVSDSNFSSEEPSR ddPTM_HeLa_A485_30min_R1 2 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR;RS(0.627)S(0.373)DPALIGLSTSVSDSNFSSEEPSR ; 215.72 3.29E-38 3890970000 330690 450100 457160 364520 494110 376620 500470 547120 374070 432120 TRUE FALSE FALSE 404250.8496 502735.2797 626282.508 384432.8046 444914.6735 396339.2408 393540.496 412937.9621 449142.4178 324400.4366 1.246147674 1.549736754 1.930584664 1.185056372 1.371498381 1.221759271 1.213131832 1.272926654 1.384530867 1 18.30741624 -5.313746914 24.99936376 1.251084337 1.572915983 0.416384076 0.183774301 324.9003417 155279.0645 0.051367989 0.076191127 4.86E-06 5.313746914 0.321831647 RS(ph)SDPALIGLSTSVSDSNFSSEEPSR ddPTM_HeLa_A486_30min_R1 3 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 RS(0.634)S(0.366)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR ;; 275.96 6.82E-76 3957500000 698911 772921 776339 341516 1024200 807150 854726 837002 748423 800227 TRUE FALSE FALSE 649920.9481 711671.925 1076958.252 795066.5073 895735.2857 707572.0395 640864.5144 646434.9162 813296.9082 599844.9506 1.083481569 1.186426466 1.795394378 1.325453363 1.493278029 1.179591557 1.068383611 1.077670014 1.355845219 1 19.19423011 -6.39675339 5.589591241 1.131111522 1.385769773 0.272959022 0.197225351 0.330867738 13.70745742 0.072981509 0.063915938 4.01E-07 6.39675339 0.254658251 RS(ph)SDPLGDTASNLGSAVDELMR ddPTM_HeLa_A485_30min_R1 3 RSSDPLGDTASNLGSAVDELMR 22 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR ;; 175.59 1.01E-14 151377000 81860 105097 104728 81328 138959 103190 112466 110500 100951 134978 TRUE FALSE FALSE 100069.4746 117387.1799 143471.2453 85770.74271 125123.754 108592.8688 88436.72034 83399.70174 121210.9397 101330.4687 0.987555627 1.158458867 1.415874684 0.846445732 1.234808796 1.071670449 0.872755465 0.82304664 1.196194405 1 16.62870851 -6.559346791 7.619848116 0.959468109 1.132848403 0.160365189 0.166769632 0.364601614 62.48602547 0.06277549 0.048793042 2.76E-07 6.559346791 0.173380294 RS(ph)SDPLGDTASNLGSAVDELMR ddPTM_HeLa_A486_30min_R1 3 RSSDPLGDTASNLGSAVDELMR 22 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR ;; 174.15 1.53E-14 120344000 93339 107936 99011 41882 132236 103695 117148 117287 89618 98729 TRUE FALSE FALSE 86796.4181 99382.75826 137350.7108 97503.4126 115649.7278 90902.16519 87836.33133 90583.31046 97386.1604 74006.61578 1.172819716 1.342890189 1.855924762 1.317495896 1.562694451 1.228297825 1.186871341 1.223989362 1.315911549 1 16.17536663 -6.344915442 6.527181812 1.202433917 1.459133192 0.330792756 0.184028859 0.317100049 20.67690695 0.066002369 0.058113309 4.52E-07 6.344915442 0.256699275 RS(ph)SDSWEVWGSASTNR ddPTM_HeLa_A485_30min_R1 4 RSSDSWEVWGSASTNR 16 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 RS(0.5)S(0.5)DSWEVWGSASTNR;RS(0.499)S(0.499)DS(0.002)WEVWGSASTNR;RS(0.5)S(0.5)DSWEVWGSASTNR;RS(0.5)S(0.5)DS(0.001)WEVWGSASTNR ;;; 220.86 5.23E-34 1807660000 675413 898511 884981 543821 1023656 776865 869020 962904 736397 784452 TRUE FALSE FALSE 825656.2917 1003584.045 1212372.299 573528.5642 921737.2144 817540.4501 683346.7778 726750.2842 884185.1233 588902.5532 1.402025322 1.70415978 2.058697644 0.973893832 1.56517782 1.388244024 1.160373264 1.234075621 1.501411598 1 19.1676694 -5.263726825 24.9997788 1.284058307 1.719880792 0.446917696 0.234070279 192.0575286 2099027.779 0.064219017 0.100694143 5.45E-06 5.263726825 0.435822486 RS(ph)SDSWEVWGSASTNR ddPTM_HeLa_A486_30min_R1 4 RSSDSWEVWGSASTNR 16 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 RS(0.5)S(0.5)DS(0.001)WEVWGSASTNR;RS(0.495)S(0.495)DS(0.011)WEVWGSASTNR;RS(0.499)S(0.499)DS(0.001)WEVWGSASTNR;RS(0.5)S(0.5)DS(0.001)WEVWGSASTNR ;;; 171.5 1.83E-12 1416280000 722119 807920 745010 349812 1011830 742420 920110 941610 675061 807940 TRUE FALSE FALSE 671502.1871 743897.4768 1033497.824 814380.0145 884916.8465 650827.7688 689888.7461 727225.9582 733575.831 605626.5652 1.108772676 1.228310513 1.706493545 1.344690047 1.461159231 1.074635437 1.13913224 1.200782793 1.211267592 1 19.20806896 -6.264027046 24.98787095 1.138585572 1.379320676 0.378739467 0.156008421 273.2073064 2638221.174 0.056202118 0.051837188 5.44E-07 6.264027046 0.240735105 RS(ph)SFSMEEES ddPTM_HeLa_A485_30min_R1 1 RSSFSMEEES 10 1 P19532 P19532 TFE3 Transcription factor E3 1 0 RS(0.682)S(0.316)FS(0.001)MEEES 88.155 0.0094786 601250000 547080 706200 690440 543660 800470 719600 767400 923810 661920 710660 TRUE FALSE FALSE 668776.0586 788783.9469 945862.4876 573358.7692 720772.3962 757277.1433 603438.7209 697244.149 794761.2725 533505.5407 1.253550352 1.478492512 1.772919708 1.074700683 1.351012016 1.419436323 1.131082388 1.306910792 1.48969638 1 19.02514373 -13.30262861 0.159374665 1.03E-10 1.464512163 0.241632063 0.189224742 154.5298499 1.736828731 50.6980561 0.855266011 4.98E-14 13.30262861 1.464512163 RS(ph)SFSMEEES ddPTM_HeLa_A486_30min_R1 2 RSSFSMEEES 10 1 P19532 P19532 TFE3 Transcription factor E3 1 0 RS(0.693)S(0.301)FS(0.006)MEEES;RS(0.634)S(0.358)FS(0.008)MEEES ; 107.09 0.0023782 599930000 1102080 1151350 954790 351100 1289630 1027100 1091090 1161930 884120 1038740 TRUE FALSE FALSE 1024829.883 1060112.833 1324510.258 817378.5436 1127872.58 900386.8448 818087.7416 897383.9038 960756.2335 778632.7429 1.31619161 1.361505591 1.701071873 1.04976133 1.448529606 1.156369101 1.050672155 1.152512416 1.233901659 1 19.57058349 -6.043836517 1.076571678 1.113812907 1.417146645 0.373124618 0.162351129 0.552462931 1.360717921 0.078878556 0.088209847 9.04E-07 6.043836517 0.303333738 RS(ph)SFSMEEGDVL ddPTM_HeLa_A486_30min_R1 1 RSSFSMEEGDVL 12 1 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 RS(0.498)S(0.498)FS(0.004)MEEGDVL 84.753 0.0089194 131050000 187900 195510 172480 66300 218750 183200 209470 214100 172590 208750 TRUE FALSE FALSE 174729.1803 180017.0756 239268.8752 154349.7506 191312.3352 160598.6466 157058.3905 165354.1038 187550.2402 156477.6413 1.116639917 1.150433213 1.529093059 0.986401312 1.222617709 1.026336065 1.003711388 1.056726715 1.198575328 1 17.255597 RS(ph)SGFISELPSEEGK ddPTM_HeLa_A485_30min_R1 6 RSSGFISELPSEEGK 15 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 RS(0.499)S(0.499)GFIS(0.001)ELPSEEGK;RS(0.5)S(0.5)GFIS(0.001)ELPSEEGK;RS(0.5)S(0.5)GFISELPSEEGK;RS(0.5)S(0.5)GFISELPSEEGK;RS(0.422)S(0.422)GFIS(0.156)ELPSEEGK;RS(0.492)S(0.492)GFIS(0.015)ELPSEEGK ;;;;; 203.71 1.26E-25 4739510000 3059460 2814960 2205550 3806930 3730410 3189660 4763730 4836440 2762590 5240370 TRUE FALSE FALSE 3740026.322 3144145.085 3021474.726 4014892.946 3358997.282 3356665.665 3745920.169 3650295.507 3317016.473 3934042.201 0.950682817 0.799214885 0.768033125 1.02055157 0.853828482 0.853235805 0.952180983 0.927874009 0.843157319 1 21.907581 -13.99999999 0.141037203 1.392418482 0.844557084 0.172389647 0.073697374 241.7883048 2.080152138 26.72796577 0.449233494 1.00E-14 13.99999999 -0.547861398 RS(ph)SGFISELPSEEGK ddPTM_HeLa_A486_30min_R1 6 RSSGFISELPSEEGK 15 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 RS(0.5)S(0.5)GFIS(0.001)ELPSEEGK;RS(0.5)S(0.5)GFISELPSEEGK;RS(0.5)S(0.5)GFIS(0.001)ELPSEEGK;RS(0.5)S(0.5)GFISELPSEEGK;RS(0.484)S(0.484)GFIS(0.032)ELPSEEGK;RS(0.499)S(0.499)GFIS(0.003)ELPSEEGK ;;;;; 223.93 6.41E-34 3498420000 5384030 5604920 3329760 2620450 5595640 6008550 7724450 7060370 4528440 7401680 TRUE FALSE FALSE 5006637.3 5160765.726 4619132.246 6100540.03 4893782.654 5267276.191 5791710.909 5452877.878 4920968.825 5548251.151 0.902381158 0.930160799 0.83253842 1.099542876 0.882040578 0.949357923 1.04388045 0.98281021 0.886940532 1 22.40360166 -5.224207154 24.9996463 0.974658722 0.892540216 0.278876128 0.065666926 819.9880029 550581.5135 0.017441878 0.030209415 5.97E-06 5.224207154 -0.082118507 RS(ph)SGREEDDEELLR ddPTM_HeLa_A486_30min_R1 1 RSSGREEDDEELLR 14 2 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 RS(0.5)S(0.5)GREEDDEELLR 115.73 0.00028 0 207810 198250 154750 87157 260320 227190 272030 285450 134200 368750 TRUE FALSE FALSE 193243.5921 182539.948 214673.3443 202905.9007 227668.2382 199161.6077 203965.2168 220459.2663 145832.5641 276412.5998 0.69911282 0.660389389 0.776640951 0.734068927 0.823653619 0.720522899 0.7379013 0.797573144 0.527590147 1 18.07646385 -10.91756745 2.56753007 1.168297502 0.725973818 0.532143934 0.078645655 49484192.12 26976030.92 50101293.29 0.019695383 1.21E-11 10.91756745 -0.442323684 RS(ph)SITEPEGPNGPNIQK ddPTM_HeLa_A485_30min_R1 1 RSSITEPEGPNGPNIQK 17 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 RS(0.498)S(0.498)IT(0.004)EPEGPNGPNIQK 135.91 3.83E-06 552800000 128140 138810 93138 137820 183150 174610 211130 221880 140810 193310 TRUE FALSE FALSE 156644.3009 155042.622 127593.622 145348.7576 164914.9429 183752.3096 166020.3507 167463.5821 169069.2754 145121.3746 1.079401993 1.06836517 0.879220048 1.001566847 1.136393198 1.266197416 1.144010324 1.153955319 1.165019804 1 17.1469005 -5.794278638 5.275960223 1.159489691 1.00181107 0.412055627 0.079226398 0.167197819 11.72747496 0.024747221 0.029109928 1.61E-06 5.794278638 -0.157678621 RS(ph)SITEPEGPNGPNIQK ddPTM_HeLa_A486_30min_R1 1 RSSITEPEGPNGPNIQK 17 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 RS(0.619)S(0.372)IT(0.009)EPEGPNGPNIQK 168.27 1.33E-12 0 229450 245980 179640 109160 288480 249670 316430 272680 202550 290440 TRUE FALSE FALSE 213366.7399 226487.649 249201.4189 254129.9966 252296.1484 218868.2539 237255.8671 210596.7166 220107.1971 217711.9336 0.980041546 1.04030884 1.144638306 1.167276375 1.158853097 1.00531124 1.089769694 0.967318204 1.011001985 1 17.73206096 -6.946508666 1.522525037 0.993134325 1.095962812 0.292990762 0.061540424 0.544096672 2.478283419 0.043780991 0.022101206 1.13E-07 6.946508666 0.102828487 RS(ph)SLLNAK ddPTM_HeLa_A485_30min_R1 1 RSSLLNAK 8 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;D6RE77;B7Z7Y1 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 RS(0.673)S(0.327)LLNAK 100.88 0.0012256 486550000 278310 293510 247840 335340 346830 326760 406490 408580 258750 433930 TRUE FALSE FALSE 340219.0993 327833.4413 339526.3295 353658.7751 312298.3874 343868.6483 319640.0908 308375.1144 310678.7516 325759.2369 1.044388189 1.006367293 1.042261557 1.085644657 0.958678533 1.055591398 0.98121574 0.946635059 0.953706653 1 18.31344656 -6.915327147 5.425109228 0.962806448 1.030325297 0.444886716 0.033913411 0.182705573 8.868832762 0.014212127 0.009452239 1.22E-07 6.915327147 0.067518849 RS(ph)SLPNGEGLQLK ddPTM_HeLa_A485_30min_R1 2 RSSLPNGEGLQLK 13 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 RS(0.5)S(0.5)LPNGEGLQLK;RS(0.5)S(0.5)LPNGEGLQLK ; 117.3 9.44E-05 443720000 258000 272010 225130 279400 348460 267770 354080 347710 276950 439640 TRUE FALSE FALSE 315391.2099 303819.2033 308414.9554 294662.9145 313766.0989 281790.0231 278427.9154 262433.5773 332531.3247 330045.839 0.955598201 0.920536384 0.934460972 0.892793908 0.950674306 0.853790564 0.843603774 0.795142814 1.007530729 1 18.33230688 -6.255498964 24.97143925 0.88368439 0.928332365 0.023529599 0.064661312 1161.997214 4884639.443 0.02097219 0.020426375 5.55E-07 6.255498964 0.044647976 RS(ph)SLPNGEGLQLK ddPTM_HeLa_A486_30min_R1 2 RSSLPNGEGLQLK 13 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 RS(0.608)S(0.392)LPNGEGLQLK;RS(0.66)S(0.34)LPNGEGLQLK ; 160.43 5.77E-12 515440000 508260 565270 415760 250494 573110 583200 671050 640460 454890 584710 TRUE FALSE FALSE 472633.5987 520475.9465 576753.4064 583162.6913 501225.1998 511250.7135 503146.1924 494641.2391 494320.2315 438294.8102 1.078346327 1.187501961 1.315902888 1.330526116 1.143580047 1.166453952 1.147962925 1.128558285 1.127825883 1 18.74154207 -7.831034301 0.560724536 1.002996266 1.220704536 0.433405263 0.070939036 0.85724367 0.6622498 0.081771367 0.039617951 1.48E-08 7.831034301 0.217708271 RS(ph)SLPSFETLDYGDEEDIETQLSSSGK ddPTM_HeLa_A486_30min_R1 2 RSSLPSFETLDYGDEEDIETQLSSSGK 27 1 K7EPU8;K7EQI2;A0A0C4DGP8;K7EJF0;Q96ST8-3;Q96ST8 K7EPU8 CEP89 Centrosomal protein of 89 kDa 1 0 RS(0.479)S(0.479)LPS(0.019)FET(0.023)LDYGDEEDIETQLSSSGK;RS(0.492)S(0.492)LPS(0.007)FET(0.009)LDYGDEEDIETQLSSSGK ; 105.48 0.00031076 103051000 73793 74979 53637 35223.3 84022 76154 82023 92332 62596 92141 TRUE FALSE FALSE 68620.49177 69037.39097 74406.68285 82001.62249 73483.17729 66758.89376 61499.97785 71310.01919 68021.87168 69068.29386 0.993516532 0.999552575 1.077291456 1.187254207 1.063920551 0.966563528 0.890422717 1.032456648 0.984849457 1 16.07573597 -6.252969593 10.17955508 0.971593651 1.068294136 0.356484449 0.059890921 0.312986666 351.1698951 0.022170536 0.021321003 5.59E-07 6.252969593 0.096700485 RS(ph)SLS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 RSSLSPGR 8 1 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 RS(0.631)S(0.412)LS(0.957)PGR 87.442 0.0020697 3582200000 1135800 1557500 1546400 1219100 1828000 1488500 1613500 1837600 1382000 1636600 TRUE FALSE FALSE 1388454.792 1739636.077 2118477.711 1285696.346 1645997.902 1566435.558 1268762.544 1386925.719 1659354.724 1228625.739 1.130087664 1.41592026 1.724266099 1.046450766 1.33970651 1.274949326 1.032668048 1.128843125 1.350577861 1 20.22861408 -5.857771292 1.217029834 1.154631966 1.390815474 0.188306412 0.191361808 0.772757784 2.41651334 0.082378663 0.108351931 1.39E-06 5.857771292 0.236183508 RS(ph)SLSSHSHQSQIYR ddPTM_HeLa_A485_30min_R1 1 RSSLSSHSHQSQIYR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 RS(0.5)S(0.5)LSSHSHQSQIYR 186.15 5.43E-18 131910000 22804 65666 75104 14280 69481 33435 38574 44423 52056 23280 TRUE FALSE FALSE 27876.67113 73345.06748 102888.0949 15060.08024 62563.22768 35185.6049 30332.34978 33528.1896 62503.16171 17476.72444 1.595074136 4.196728497 5.88714981 0.861722132 3.579802835 2.013283726 1.735585515 1.918448146 3.576365923 1 14.09314719 -5.27496025 24.99156931 2.17928112 3.923358779 0.287057864 1.29168676 988.5276048 1827162.207 0.359042613 0.535839631 5.31E-06 5.27496025 1.744077659 RS(ph)SLTTAALPFTQSILTQVGR ddPTM_HeLa_A486_30min_R1 1 RSSLTTAALPFTQSILTQVGR 21 1 Q3MII6;C9JMI8 Q3MII6 TBC1D25 TBC1 domain family member 25 1 0 RS(0.361)S(0.361)LT(0.233)T(0.045)AALPFTQSILTQVGR 138.04 2.08E-07 72240000 18163 18140 18376 11198 25278 19169 20678 18453 16624 15056 TRUE FALSE FALSE 16889.86749 16702.52034 25491.67933 26069.50992 22107.39753 16804.12368 15504.14569 14251.65473 18064.9817 11285.8796 1.496548616 1.479948478 2.25872331 2.309922738 1.958854632 1.488951173 1.373764938 1.262786352 1.600671134 1 13.46223124 -6.387434789 3.487025339 1.339837614 1.919841603 0.486024441 0.288886886 0.249997507 5.578935981 0.119025978 0.102941348 4.10E-07 6.387434789 0.580003989 RS(ph)SLYGIAK ddPTM_HeLa_A485_30min_R1 1 RSSLYGIAK 9 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 RS(0.623)S(0.377)LYGIAK 90.731 0.0020229 247450000 316250 306290 234850 313760 394770 328370 443130 476090 313110 489890 TRUE FALSE FALSE 386598.7215 342107.9511 321730.7879 330899.9143 355465.3127 345562.9454 348451.6555 359328.181 375948.305 367769.4388 1.051198606 0.93022398 0.87481654 0.899748265 0.966543914 0.939618438 0.947473114 0.977047419 1.022239113 1 18.48844207 -7.438417487 2.296749861 1.011034261 0.939294337 0.265202844 0.044095438 0.431908271 4.227298124 0.036093838 0.012893516 3.64E-08 7.438417487 -0.071739924 RS(ph)SLYGIAK ddPTM_HeLa_A486_30min_R1 1 RSSLYGIAK 9 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 RS(0.634)S(0.366)LYGIAK 91.62 0.0019375 342450000 584290 643180 362550 219150 560790 588140 692210 820330 454000 610760 TRUE FALSE FALSE 543334.2883 592212.0744 502939.0694 510192.2752 490450.489 515581.2666 519011.7365 633558.7667 493353.0855 457821.7206 1.186781369 1.293542983 1.098547856 1.114390716 1.071269595 1.126161655 1.133654681 1.383854759 1.077609609 1 18.80442639 -7.99648705 24.99998893 0.999999905 1.172613835 0.286569144 0.090702416 105.0748477 747759.2048 0.091106052 0.023523481 1.01E-08 7.99648705 0.17261393 RS(ph)SPDDGNDVSPYSLSPVSNK ddPTM_HeLa_A486_30min_R1 2 RSSPDDGNDVSPYSLSPVSNK 21 1 K7EQT1;Q9UM11-2;Q9UM11 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 RS(0.603)S(0.397)PDDGNDVSPYSLSPVSNK;RS(0.5)S(0.5)PDDGNDVSPYSLSPVSNK ; 146.25 1.10E-09 390840000 324020 331330 215395 122683 353820 327480 379810 366140 271890 367720 TRUE FALSE FALSE 301307.8712 305074.2041 298801.7125 285612.2241 309440.5964 287078.8472 284777.5208 282777.9148 295457.6441 275640.5185 1.093118939 1.10678287 1.084026812 1.036176487 1.122623764 1.041497269 1.033148255 1.025893857 1.07189482 1 18.07242845 -1.000000054 0.084553298 0.950246658 1.37400544 0.506899367 0.026551735 142.0314244 0.87203447 0.617708169 7.002458908 0.099999988 1.000000054 0.423758783 RS(ph)SPETGTTGDVAWQISPK ddPTM_HeLa_A485_30min_R1 2 RSSPETGTTGDVAWQISPK 19 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 RS(0.62)S(0.38)PETGTTGDVAWQISPK;RS(0.563)S(0.39)PET(0.014)GT(0.014)T(0.019)GDVAWQISPK ; 197.37 1.21E-25 704080000 549710 648640 554400 607550 742310 697670 930140 935470 573020 872540 TRUE FALSE FALSE 671991.093 724492.8056 759495.6305 640738.9181 668403.01 734198.9224 731407.9905 706044.5157 688019.8579 655031.8359 1.025890737 1.106042128 1.159478958 0.978179812 1.020413014 1.120859907 1.116599149 1.077878169 1.050360945 1 19.3212055 -8.081006243 2.962779562 1.000129349 1.077124151 0.165934999 0.051703358 0.674158894 13.64633887 0.052299333 0.013986356 8.30E-09 8.081006243 0.076994801 RS(ph)SPETGTTGDVAWQISPK ddPTM_HeLa_A486_30min_R1 2 RSSPETGTTGDVAWQISPK 19 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 RS(0.436)S(0.309)PET(0.058)GT(0.082)T(0.115)GDVAWQISPK;RS(0.721)S(0.278)PETGTTGDVAWQISPK ; 197.33 1.21E-25 983910000 710380 764390 477580 298830 807800 704460 839600 878280 615850 889150 TRUE FALSE FALSE 660586.0304 703816.9525 662511.766 695691.342 706478.1916 617550.8876 629523.1996 678314.8167 669232.3739 666501.0526 0.991125262 1.055987758 0.994014583 1.043796314 1.059980609 0.926556508 0.944519438 1.017725049 1.004098 1 19.34624763 -6.246980398 24.9847991 0.977558839 1.029361789 0.364114798 0.033287185 910.6372703 1573561.656 0.011459748 0.011412717 5.66E-07 6.246980398 0.051802951 RS(ph)SPPGHYYQK ddPTM_HeLa_A485_30min_R1 6 RSSPPGHYYQK 11 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 RS(0.5)S(0.5)PPGHYYQK;RS(0.5)S(0.5)PPGHYYQK;RS(0.715)S(0.284)PPGHYYQK;RS(0.5)S(0.5)PPGHYYQK;RS(0.959)S(0.041)PPGHYYQK;RS(0.5)S(0.5)PPGHYYQK ;;;;; 125.36 3.62E-05 6221240000 1370200 1844450 1359500 1335950 1836950 1836170 2195490 2517240 1569040 2396620 TRUE FALSE FALSE 1674996.263 2060142.383 1862435.624 1408929.566 1654056.808 1932309.022 1726405.626 1899882.943 1883931.936 1799186.741 0.930974104 1.145040888 1.035154151 0.783092457 0.919335815 1.073990253 0.959547771 1.055967622 1.047101945 1 20.7789135 -7.263759411 24.76560732 1.038651089 0.980693072 0.070374311 0.092884649 578.554273 6175765.649 0.051573467 0.026686522 5.45E-08 7.263759411 -0.057958017 RS(ph)SPPGHYYQK ddPTM_HeLa_A486_30min_R1 5 RSSPPGHYYQK 11 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 RS(0.661)S(0.339)PPGHYYQK;RS(0.958)S(0.042)PPGHYYQK;RS(0.975)S(0.025)PPGHYYQK;RS(0.5)S(0.5)PPGHYYQK;RS(0.975)S(0.025)PPGHYYQK ;;;; 111.83 0.00028959 3063140000 846930 944640 759380 209744 1126650 896070 987820 1006170 1033250 891690 TRUE FALSE FALSE 787564.5806 869783.2861 1053432.273 488294.6319 985335.0514 785521.994 740656.9879 777087.0555 1122812.942 668405.0201 1.178274485 1.301281798 1.576038841 0.73053705 1.474158664 1.175218573 1.108096088 1.162599071 1.679839182 1 19.35036304 RS(ph)SPPPPPSGSSSR ddPTM_HeLa_A485_30min_R1 1 RSSPPPPPSGSSSR 14 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 RS(0.5)S(0.5)PPPPPSGSSSR 62.658 0.013702 645240000 75872 91393 69352 119740 93133 89239 99846 139540 101990 141220 TRUE FALSE FALSE 92749.46464 102080.6163 95008.19078 126281.093 83860.35151 93911.41605 78513.08643 105317.5962 122458.4575 106016.453 0.874859157 0.962875228 0.896164587 1.19114618 0.791012613 0.885819261 0.740574545 0.993408035 1.155089178 1 16.69392865 -7.5228638 24.9999578 1.076445994 0.9102984 0.256202423 0.117795907 0.781100604 1318361.153 0.078731496 0.030428087 3.00E-08 7.5228638 -0.166147594 RS(ph)SPSARPPDVPGQQPQAAK ddPTM_HeLa_A485_30min_R1 6 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RS(0.494)S(0.494)PS(0.011)ARPPDVPGQQPQAAK;RS(0.487)S(0.487)PS(0.025)ARPPDVPGQQPQAAK;RS(0.443)S(0.443)PS(0.115)ARPPDVPGQQPQAAK;RS(0.479)S(0.479)PS(0.042)ARPPDVPGQQPQAAK;RS(0.878)S(0.114)PS(0.008)ARPPDVPGQQPQAAK;RS(0.746)S(0.246)PS(0.008)ARPPDVPGQQPQAAK ;;;;; 175.12 2.53E-14 11718390000 2602961 2742955 2201327 2776930 3259470 3019760 3694330 4183960 2739924 3829350 TRUE FALSE FALSE 3181980.694 3063719.727 3015689.462 2928626.654 2934945.722 3177869.964 2905006.216 3157837.25 3289801.615 2874763.519 1.106866938 1.065729305 1.049021752 1.018736545 1.020934662 1.105437001 1.010520064 1.098468528 1.144372952 1 21.45501185 -7.324408943 24.99959496 1.091065616 1.053522768 0.055237325 0.045848308 493.8318011 196054.2246 0.024233536 0.011641414 4.74E-08 7.324408943 -0.037542848 RS(ph)SPSARPPDVPGQQPQAAK ddPTM_HeLa_A486_30min_R1 3 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RS(0.494)S(0.494)PS(0.012)ARPPDVPGQQPQAAK;RS(0.483)S(0.483)PS(0.034)ARPPDVPGQQPQAAK;RS(0.833)S(0.148)PS(0.019)ARPPDVPGQQPQAAK ;; 170.89 5.76E-14 11365600000 1265781 1273740 841692 455751 1360680 1253080 1478180 1431520 1136242 1534050 TRUE FALSE FALSE 1177056.288 1172804.204 1167617.684 1061011.36 1190010.827 1098487.73 1108323.729 1105594.146 1234732.371 1149913.895 1.023603849 1.019906107 1.015395752 0.922687659 1.034869508 0.955278247 0.963831931 0.961458202 1.07376072 1 20.13309441 -11.09149097 2.762610846 1.011273834 0.993700098 0 0.043135793 62871617.15 10694.55494 4508841.168 0.010243076 8.10E-12 11.09149097 -0.017573736 RS(ph)SQPPADRDPAPFR ddPTM_HeLa_A486_30min_R1 1 RSSQPPADRDPAPFR 15 2 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 1 0 RS(0.5)S(0.5)QPPADRDPAPFR 66.636 0.0058611 252640000 107420 122340 95245 61663 129290 113770 123570 135560 106910 122230 TRUE FALSE FALSE 99890.41272 112645.3328 132126.4147 143554.5803 113073.2426 99734.21413 92651.47901 104695.9473 116177.0449 91622.81242 1.090235173 1.229446356 1.44206897 1.566799539 1.234116697 1.088530372 1.011227189 1.142684278 1.267992564 1 16.48341923 -6.00235964 24.97939146 1.111547854 1.341130105 0.38867857 0.136021419 106.9158641 1131842.875 0.046175738 0.051517093 9.95E-07 6.00235964 0.229582251 RS(ph)SRSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RS(0.804)S(0.226)RS(0.193)S(0.76)PELT(0.017)R 135.08 0.00062858 664470000 417740 549700 547410 468740 692570 510430 611980 620020 520470 569900 TRUE FALSE FALSE 510664.8218 613982.6332 749919.7386 494346.0793 623615.299 537155.3255 481225.4736 467959.1228 624923.555 427834.4182 1.193603881 1.435094062 1.752827044 1.155461221 1.457609001 1.255521535 1.124793736 1.093785593 1.460666857 1 18.70669302 -6.437539563 4.016797751 1.178112613 1.406498231 0.248628556 0.188095212 0.34725254 10.28394786 0.069609982 0.059491502 3.65E-07 6.437539563 0.228385617 RS(ph)SSAPLIHGLSDLSQVFQPYTLR ddPTM_HeLa_A485_30min_R1 2 RSSSAPLIHGLSDLSQVFQPYTLR 24 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RS(0.307)S(0.307)S(0.307)APLIHGLS(0.079)DLSQVFQPYTLR;RS(0.332)S(0.332)S(0.332)APLIHGLS(0.004)DLSQVFQPYTLR ; 203.19 1.16E-28 220630000 41420 85821 67602 25904 92731 88228 95104 187902 56541 36779 TRUE FALSE FALSE 50633.7361 95857.01941 92610.79295 27319.06993 83498.37604 92847.48165 74784.25347 141818.7399 67888.26008 27610.67217 1.833846557 3.471737987 3.354166548 0.989438785 3.02413413 3.362738911 2.708527088 5.136374045 2.458768829 1 14.75293839 -5.978440135 24.99717389 3.179500758 2.486690645 0.026313384 1.172400307 686.0435681 795416.4104 0.355415517 0.40297231 1.05E-06 5.978440135 -0.692810114 RS(ph)SSAPLIHGLSDLSQVFQPYTLR ddPTM_HeLa_A486_30min_R1 2 RSSSAPLIHGLSDLSQVFQPYTLR 24 1 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RS(0.333)S(0.333)S(0.333)APLIHGLSDLSQVFQPYTLR;RS(0.333)S(0.333)S(0.333)APLIHGLSDLSQVFQPYTLR ; 228.3 1.70E-38 184296000 150834 138123 164004 24724.2 267710 116624 170806 201008 115644 137625 TRUE FALSE FALSE 140261.3155 127177.6304 227510.741 57559.18709 234131.3155 102236.1166 128068.5322 155242.8664 125668.115 103162.8042 1.359611311 1.232785706 2.205356308 0.557945158 2.269532292 0.991017232 1.241421588 1.504833719 1.218153345 1 16.65456337 -8.50589082 0.368882033 0.946389141 1.482475877 0.071692332 0.483879837 7.545207564 2.02860475 1.22887172 0.402259073 3.12E-09 8.50589082 0.536086736 RS(ph)SSDEQGLSYSSLK ddPTM_HeLa_A485_30min_R1 2 RSSSDEQGLSYSSLK 15 1 Q9NPH3 Q9NPH3 IL1RAP Interleukin-1 receptor accessory protein 1 0 RS(0.333)S(0.333)S(0.333)DEQGLSYSSLK;RS(0.333)S(0.333)S(0.333)DEQGLSYSSLK ; 114.75 9.53E-05 117470000 109700 125180 83677 113260 118590 139065.2 166610 176720 98528 234152.8 TRUE FALSE FALSE 134102.3865 139818.7121 114632.6044 119447.107 106782.7632 146346.4388 131012.4124 133379.1429 118301.6658 175782.8162 0.762886779 0.79540603 0.652126339 0.679515265 0.607469863 0.832541212 0.745308417 0.758772363 0.672999036 1 17.42343452 -10.57683001 2.751411633 1.018940289 0.723300452 0.614215365 0.065857649 19938685.68 19631942.95 2756559.28 0.01759668 2.65E-11 10.57683001 -0.295639838 RS(ph)SSEGLSK ddPTM_HeLa_A485_30min_R1 1 RSSSEGLSK 9 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RS(0.494)S(0.494)S(0.012)EGLS(0.001)K 62.042 0.012919 0 119820 92138 50142 153520 63041 159670 104810 124990 102680 159860 TRUE FALSE FALSE 146473.5456 102912.7376 68691.61238 161906.4089 56764.41669 168030.0743 82416.48728 94336.00652 123286.9342 120009.844 1.220512757 0.8575358 0.572383149 1.349109402 0.472998004 1.400135761 0.686747724 0.786068904 1.027306845 1 16.87279322 -7.51019223 0.003734073 0.481651167 1.360576147 0 0.303128939 453591.1903 1704.155813 200678.395 200400.4011 3.09E-08 7.51019223 0.87892498 RS(ph)SSMSYVDGFIGTWPK ddPTM_HeLa_A486_30min_R1 2 RSSSMSYVDGFIGTWPK 17 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 RS(0.567)S(0.194)S(0.194)MS(0.046)YVDGFIGTWPK;RS(0.553)S(0.194)S(0.194)MS(0.059)YVDGFIGTWPK ; 147.35 3.72E-08 200234000 218060 165556 150182 90424 240920 154139 238360 282210 136400 234670 TRUE FALSE FALSE 202775.1201 152436.7396 208336.4924 210511.6418 210701.5671 135122.8974 178719.8069 217956.9436 148223.2618 175907.1046 1.152739797 0.86657523 1.184355191 1.196720521 1.197800212 0.768149176 1.015989703 1.239045712 0.842622373 1 17.42445423 RS(ph)SSSGDQSSDSLNSPTLLAL ddPTM_HeLa_A485_30min_R1 4 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 1 0 RS(0.562)S(0.343)S(0.084)S(0.007)GDQS(0.002)S(0.002)DSLNSPTLLAL;RS(0.443)S(0.443)S(0.093)S(0.019)GDQS(0.001)S(0.001)DSLNSPTLLAL;RS(0.435)S(0.435)S(0.103)S(0.025)GDQS(0.001)S(0.001)DSLNSPTLLAL;RS(0.393)S(0.393)S(0.084)S(0.129)GDQS(0.001)S(0.001)DSLNSPTLLAL ;;; 188.96 5.82E-19 718450000 577350 802720 806500 607410 834950 776770 878990 889760 672610 739080 TRUE FALSE FALSE 705779.5157 896591.1213 1104857.911 640591.2703 751819.4463 817440.4761 691186.6058 671544.9649 807596.6575 554840.9578 1.272039322 1.615942566 1.991305609 1.154549356 1.35501793 1.473287912 1.245738254 1.210337765 1.455546218 1 19.08171476 -7.684438477 0.201069042 0.87965333 1.684809946 0.286492453 0.223169238 3.976521374 0.782717828 1.315439969 1.090785214 2.07E-08 7.684438477 0.805156616 RS(ph)SSSGDQSSDSLNSPTLLAL ddPTM_HeLa_A486_30min_R1 3 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 1 0 RS(0.491)S(0.491)S(0.014)S(0.004)GDQSSDSLNSPTLLAL;RS(0.492)S(0.492)S(0.014)S(0.003)GDQSSDSLNSPTLLAL;RS(0.48)S(0.48)S(0.032)S(0.008)GDQSSDSLNSPTLLAL ;; 128.14 3.71E-06 456250000 216389 225356 190965 69889 245999 190346 219925 218930 187473 206970 TRUE FALSE FALSE 201221.2485 207497.9698 264911.7622 162705.124 215143.5116 166863.0458 164897.4389 169084.4182 203723.3106 155143.3649 1.297001962 1.337459517 1.707528791 1.048740461 1.386740012 1.075540974 1.062871358 1.089859166 1.313129381 1 17.24324247 -5.285344511 24.99415862 1.147735642 1.436343104 0.457811206 0.153167692 705.1376034 737259.2557 0.042802857 0.063522794 5.18E-06 5.285344511 0.288607462 RS(ph)STGSYEER ddPTM_HeLa_A486_30min_R1 1 RSSTGSYEER 10 1 F8W6C0;G3V0F5;Q9UHY8;Q9UHY8-2;Q7Z674;H7C434 F8W6C0 FEZ2;DKFZp779C2259 Fasciculation and elongation protein zeta-2 1 0 RS(0.625)S(0.352)T(0.015)GS(0.008)YEER 62.494 0.01286 0 172410 261150 384080 37782 366900 176110 142390 186200 253920 97468 TRUE FALSE FALSE 160324.9493 240455.5229 532806.062 87958.4054 320879.9808 154383.3388 106762.516 143806.3247 275929.99 73061.37839 2.194387142 3.291144079 7.292581577 1.203897426 4.391923447 2.113063593 1.461271582 1.968294712 3.776687439 1 16.15682135 -6.279140563 22.5647687 2.086719205 3.717190102 0.196395402 1.627839938 402.5327731 513129.3885 0.569644909 0.503953602 5.26E-07 6.279140563 1.630470897 RS(ph)STSSEPTPTVK ddPTM_HeLa_A485_30min_R1 3 RSSTSSEPTPTVK 13 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 RS(0.488)S(0.488)T(0.019)S(0.005)S(0.001)EPTPTVK;RS(0.384)S(0.384)T(0.197)S(0.032)S(0.002)EPTPTVK;RS(0.408)S(0.408)T(0.116)S(0.058)S(0.009)EPTPTVK ;; 126.91 1.61E-05 1248060000 1319980 1433520 1114910 1389710 1667950 1440700 1888200 1919680 1233020 1833460 TRUE FALSE FALSE 1613604.997 1601157.694 1527361.604 1465626.338 1501883.041 1516132.824 1484770.645 1448875.47 1480475.804 1376412.164 1.172326894 1.163283597 1.109668778 1.064816467 1.091157925 1.101510771 1.078725314 1.052646517 1.075604999 1 20.39248112 -1 0.16028467 1.005963247 1.645790844 0.818225037 0.020501771 28.92624805 0.299558515 0.067318888 4.372756627 0.1 1 0.639827597 RS(ph)STSSEPTPTVK ddPTM_HeLa_A486_30min_R1 1 RSSTSSEPTPTVK 13 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 RS(0.378)S(0.378)T(0.213)S(0.025)S(0.005)EPTPTVK 130.27 1.24E-05 381550000 455350 428860 306320 154760 496120 431200 525580 526600 348550 499810 TRUE FALSE FALSE 423432.3164 394875.5717 424935.3075 360289.1011 433892.0035 378002.9281 394074.325 406704.6756 378762.5946 374654.3228 1.130194664 1.053973083 1.134206338 0.961657398 1.158112898 1.008937853 1.051834454 1.085546465 1.0109655 1 18.51520057 -1.000000002 0.08581542 0.956973328 1.354081624 0.210753452 0.055548903 288.8378676 1.796725617 1.154127801 13.53161752 0.1 1.000000002 0.397108296 RS(ph)STVAPAQPDGAESEWTDVETR ddPTM_HeLa_A485_30min_R1 1 RSSTVAPAQPDGAESEWTDVETR 23 1 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 RS(0.446)S(0.446)T(0.109)VAPAQPDGAESEWTDVETR 195.35 5.92E-22 406500000 28938 32947 34402 23634 44430 32040 32766 28220 31104 35762 TRUE FALSE FALSE 35375.15827 36799.86505 47128.73139 24925.06558 40006.3932 33717.56486 25765.27643 21299.00075 37346.2875 26847.19155 1.317648373 1.370715629 1.75544363 0.928404952 1.490151889 1.255906592 0.959700994 0.793341855 1.391068687 1 14.71248356 -6.611538628 4.481012489 1.020877 1.369633236 0.310942261 0.235565312 0.258026818 9.378594234 0.090957984 0.069527526 2.45E-07 6.611538628 0.348756236 RS(ph)STVAPAQPDGAESEWTDVETR ddPTM_HeLa_A486_30min_R1 1 RSSTVAPAQPDGAESEWTDVETR 23 1 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 RS(0.559)S(0.352)T(0.09)VAPAQPDGAESEWTDVETR 180.86 6.00E-21 342060000 8284 11838 13424 0 19935 11538 0 11071 9615.8 5644.6 TRUE FALSE FALSE 7703.334379 10899.91377 18622.13231 0 17434.56641 10114.55887 0 8550.374978 10449.30529 4231.15542 1.820621938 2.576108104 4.401193163 0 4.12052139 2.390495708 0 2.02081326 2.469610366 1 12.04683596 -6.548535084 24.99000098 1.420183809 2.612183069 0.168210084 1.287732144 415.9154359 405109.6934 0.479438963 0.371383373 2.83E-07 6.548535084 1.19199926 RS(ph)SVSTIQVEWPEPDLAPAIK ddPTM_HeLa_A485_30min_R1 2 RSSVSTIQVEWPEPDLAPAIK 21 1 Q96B33 Q96B33 CLDN23 Claudin-23 1 0 RS(0.48)S(0.48)VS(0.02)T(0.02)IQVEWPEPDLAPAIK;RS(0.484)S(0.484)VS(0.016)T(0.016)IQVEWPEPDLAPAIK ; 141.37 4.44E-09 96908000 192465 193353 114659 209980 142853 195234 256540 273600 165039 436950 TRUE FALSE FALSE 235278.1753 215963.9514 157076.1355 221450.6757 128630.0537 205456.1504 201728.1333 206499.171 198160.8135 328026.4065 0.717253766 0.658373677 0.478852106 0.675100148 0.392133228 0.626340277 0.614975286 0.629519962 0.604100187 1 18.32345243 -9.455230357 0.748653405 1.028512466 0.590244566 0.636528355 0.090784851 9.396775912 3.900304024 0.863595419 0.031549 3.51E-10 9.455230357 -0.438267899 RS(ph)SYLLAITTER ddPTM_HeLa_A486_30min_R1 1 RSSYLLAITTER 12 1 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RS(0.665)S(0.335)YLLAITTER 158.17 1.38E-08 80500000 43744 44102 42379 21016 47085 40165 46310 48815 35812 44710 TRUE FALSE FALSE 40677.77149 40607.1969 58789.28375 48926.31009 41179.16025 35209.85067 34722.74818 37700.89012 38916.21299 33514.32499 1.213742825 1.211637021 1.754153896 1.459862614 1.228703256 1.050591074 1.036056916 1.124918677 1.161181465 1 15.03249026 -5.971694119 3.581702962 1.082435899 1.418578943 0.532237417 0.147689184 0.201645823 5.515164519 0.052690559 0.058221105 1.07E-06 5.971694119 0.336143044 RS(ph)TQGVTLTDLQEAEK ddPTM_HeLa_A485_30min_R1 4 RSTQGVTLTDLQEAEK 16 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RS(0.5)T(0.5)QGVT(0.001)LTDLQEAEK;RS(0.489)T(0.489)QGVT(0.019)LT(0.003)DLQEAEK;RS(0.5)T(0.5)QGVTLTDLQEAEK;RS(0.498)T(0.498)QGVT(0.004)LTDLQEAEK ;;; 213.64 2.74E-26 832610000 1348970 704710 576110 1529880 1054600 1278920 2950430 3031900 731110 1505540 TRUE FALSE FALSE 1649043.723 787119.7043 789237.0629 1613453.471 949600.3211 1345882.274 2320046.528 2288321.771 877837.0709 1130236.585 1.459025255 0.696420302 0.698293679 1.42753605 0.84017836 1.190796946 2.052708749 2.02463962 0.776684353 1 20.10819336 -6.535599443 24.47664667 1.559303267 1.010879262 0.164820915 0.445586141 257.5867093 495632.0866 0.16772689 0.130010427 2.91E-07 6.535599443 -0.548424005 RS(ph)TQGVTLTDLQEAEK ddPTM_HeLa_A486_30min_R1 3 RSTQGVTLTDLQEAEK 16 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RS(0.5)T(0.5)QGVTLTDLQEAEK;RS(0.5)T(0.5)QGVT(0.001)LTDLQEAEK;RS(0.5)T(0.5)QGVT(0.001)LTDLQEAEK ;; 214.87 8.70E-27 1569160000 608010 1013480 1012510 593180 1147110 1924870 2754580 2238040 930550 1216380 TRUE FALSE FALSE 565391.6388 933168.1538 1404580.988 1380953.018 1003228.767 1687399.11 2065354.949 1728487.148 1011210.823 911790.5307 0.620089395 1.023445761 1.540464548 1.514550734 1.100284258 1.850643381 2.26516385 1.895706404 1.109038523 1 19.7983429 -4.224692508 0.935881382 1.632023877 9.33E-16 0.360787722 0.384600253 2.369139211 1.57416054 0.137798626 4.008312218 5.96E-05 4.224692508 -1.632023877 RS(ph)TSHDRVPQSVQIR ddPTM_HeLa_A486_30min_R1 1 RSTSHDRVPQSVQIR 15 2 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 RS(0.73)T(0.18)S(0.09)HDRVPQSVQIR 51.225 0.022332 87739000 46803 38340 31582 23102 55459 44021 48773 52918 33432 58849 TRUE FALSE FALSE 43522.35139 35301.79877 43811.3962 53782.62351 48502.81509 38590.13659 36569.47953 40869.72659 36329.91268 44112.82736 0.986614416 0.800261531 0.993166814 1.219205994 1.09951726 0.874805332 0.828998768 0.926481684 0.823567993 1 15.42891061 -6.284470908 23.59244723 0.882315077 1.01716291 0.258292328 0.108770199 607.8291178 622629.3001 0.042513153 0.037524384 5.19E-07 6.284470908 0.134847833 RS(ph)TSLPSR ddPTM_HeLa_A486_30min_R1 1 RSTSLPSR 8 1 P18054 P18054 ALOX12 "Arachidonate 12-lipoxygenase, 12S-type" 1 0 RS(0.849)T(0.134)S(0.017)LPSR 58.37 0.022083 28874000 14830 16626 16357 2967.3 22920 12891 18322 16474 11183 14656 TRUE FALSE FALSE 13790.49358 15308.49521 22690.86846 6908.024359 20045.15988 11300.63949 13737.64181 12723.22982 12152.35144 10986.04221 1.25527404 1.393449517 2.065427024 0.628800093 1.824602482 1.028636089 1.250463229 1.158126793 1.106162822 1 13.42338412 -6.62938117 0.546174672 1.026500372 1.474597394 0.136037826 0.364495829 1.831804472 1.153659102 0.323723136 0.29015878 2.35E-07 6.62938117 0.448097022 RS(ph)TSPIIGS(ph)PPVR ddPTM_HeLa_A485_30min_R1 1 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 2 0 RS(0.563)T(0.418)S(0.02)PIIGS(0.999)PPVR 125.98 1.38E-05 814990000 300090 432460 380730 253280 477130 378620 453080 525090 343950 365990 TRUE FALSE FALSE 366843.9852 483032.4351 521577.8705 267116.0451 429625.2619 398443.9577 356275.7567 396310.8542 412977.6101 274755.4285 1.335165558 1.758045101 1.898335088 0.972195696 1.563664326 1.450176835 1.296701428 1.44241319 1.503073524 1 18.06778846 -12.57967797 0.142078682 5.18E-16 1.652106629 0.263188015 0.238394423 121.9157901 1.545575801 38.09768001 1.55128102 2.63E-13 12.57967797 1.652106629 RS(ph)TSPIIGSPPVR ddPTM_HeLa_A485_30min_R1 3 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 RS(0.333)T(0.333)S(0.333)PIIGSPPVR;RS(0.333)T(0.333)S(0.333)PIIGSPPVR;RS(0.438)T(0.438)S(0.124)PIIGSPPVR ;; 110.32 0.00018609 1845250000 721050 1054410 1084870 773882 1426620 1364450 1411910 1851310 1212670 1097440 TRUE FALSE FALSE 881445.0849 1177714.077 1486208.558 816157.2141 1284580.704 1435890.492 1110243.894 1397273.32 1456041.746 823868.4049 1.069885773 1.429492951 1.803939257 0.990640264 1.559206174 1.742863889 1.347598582 1.695990903 1.7673232 1 19.65205439 RS(ph)TSPIIGSPPVR ddPTM_HeLa_A486_30min_R1 1 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 RS(0.333)T(0.333)S(0.333)PIIGSPPVR 48.623 0.033997 176710000 118500 155600 113700 92940 162400 153440 177190 179360 126160 238390 TRUE FALSE FALSE 110193.7619 143269.6893 157727.685 216369.0169 142030.2777 134510.1329 132855.1879 138523.6434 137095.6504 178695.5923 0.616656295 0.801752788 0.882661306 1.210824588 0.794816905 0.752733356 0.743472103 0.775193398 0.767202193 1 17.44714452 -5.954719437 24.99998765 0.787887416 0.889108534 0.041962409 0.153033764 351.6968606 194174.7464 0.049554681 0.056189706 1.11E-06 5.954719437 0.101221118 RS(ph)TVLGLPQHVQK ddPTM_HeLa_A485_30min_R1 3 RSTVLGLPQHVQK 13 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 RS(0.967)T(0.033)VLGLPQHVQK;RS(0.5)T(0.5)VLGLPQHVQK;RS(0.5)T(0.5)VLGLPQHVQK ;; 166.9 3.83E-10 501560000 837280 702040 547950 752170 932910 804440 1235590 1202590 683530 969860 TRUE FALSE FALSE 1023530.047 784137.4711 750659.5071 793259.1425 840026.2048 846559.2345 971596.1027 907652.9169 820708.2013 728091.751 1.405770696 1.076976178 1.030995759 1.089504367 1.153736742 1.162709553 1.334441849 1.246618871 1.127204367 1 19.47376074 -6.533077937 24.97506743 1.204897522 1.139243672 0 0.124842772 714.1852024 1748830.452 0.047536005 0.036859007 2.93E-07 6.533077937 -0.06565385 RS(ph)TVLGLPQHVQK ddPTM_HeLa_A486_30min_R1 3 RSTVLGLPQHVQK 13 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 RS(0.5)T(0.5)VLGLPQHVQK;RS(0.5)T(0.5)VLGLPQHVQK;RS(0.5)T(0.5)VLGLPQHVQK ;; 140.28 1.89E-06 976910000 512614 622858 508515 222932 757150 714770 855010 892240 524322 609335 TRUE FALSE FALSE 476682.4057 573500.4637 705425.6265 518996.9624 662181.1869 626588.9446 641077.4546 689096.4295 569770.6531 456753.5499 1.043631529 1.255601547 1.544433813 1.136273517 1.449755972 1.371831581 1.403552211 1.508683249 1.247435632 1 18.80105642 -4.35960429 3.71748246 1.354193604 1.03719911 0.214810678 0.160657495 0.301185578 6.75712709 0.037520182 0.211685299 4.37E-05 4.35960429 -0.316994495 RS(ph)VSHGSNHTQKPDEQR ddPTM_HeLa_A485_30min_R1 3 RSVSHGSNHTQKPDEQR 17 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 RS(0.5)VS(0.5)HGS(0.001)NHTQKPDEQR;RS(0.325)VS(0.325)HGS(0.325)NHT(0.025)QKPDEQR;RS(0.458)VS(0.458)HGS(0.08)NHT(0.004)QKPDEQR ;; 148.52 2.23E-08 70581000 31580.5 90608 82113 14857.4 104532 55944 67418 98536 72921 27435 TRUE FALSE FALSE 38605.47327 101203.8174 112490.0157 15669.02214 94124.42705 58873.14133 53013.59355 74369.8915 87555.57583 20595.9594 1.87441976 4.913770484 5.461751672 0.760781367 4.570043337 2.85848016 2.573980289 3.610897169 4.251104506 1 14.33007371 -5.225406443 24.99942703 2.978717275 4.166358884 0.132072769 1.450979976 1282.049537 889476.6195 0.380487813 0.658999173 5.95E-06 5.225406443 1.187641609 RS(ph)WGQQAQEYQEQK ddPTM_HeLa_A485_30min_R1 2 RSWGQQAQEYQEQK 14 1 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 RS(1)WGQQAQEYQEQK;RS(1)WGQQAQEYQEQK ; 190.23 6.17E-18 290690000 311150 309280 233610 494780 411220 341880 482800 492330 301930 637290 TRUE FALSE FALSE 380364.244 345447.6056 320032.0603 521808.5786 370277.4929 359780.3082 379645.8359 371585.2956 362524.5815 478425.3315 0.795033664 0.722051244 0.668927917 1.090679243 0.773950434 0.75200932 0.793532054 0.77668399 0.757745374 1 18.86793425 -11.181991 2.305153888 1.543333974 0.793225702 0.256377457 0.106113395 20809065.02 3749060.733 59161713.83 0.026955234 6.58E-12 11.181991 -0.750108272 RS(ph)YDVPPPPMEPDHPFYSNISK ddPTM_HeLa_A485_30min_R1 8 RSYDVPPPPMEPDHPFYSNISK 22 1 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 0 RS(0.99)Y(0.01)DVPPPPMEPDHPFYSNISK;RS(0.961)Y(0.039)DVPPPPMEPDHPFYSNISK;RS(0.975)Y(0.025)DVPPPPMEPDHPFYSNISK;RS(0.527)Y(0.473)DVPPPPMEPDHPFYSNISK;RS(0.543)Y(0.457)DVPPPPMEPDHPFYSNISK;RS(1)YDVPPPPMEPDHPFYSNISK;RS(0.992)Y(0.001)DVPPPPMEPDHPFYS(0.007)NISK;RS(1)YDVPPPPMEPDHPFYSNISK ;;;;;;; 231.07 8.75E-37 4490570000 2786790 2803960 2446350 3066360 4039940 3352250 4359890 4778020 2909920 4268840 TRUE FALSE FALSE 3406701.821 3131858.731 3351356.666 3233867.482 3637709.389 3527768.626 3428363.884 3606203.103 3493914.253 3204696.75 1.063034067 0.977271478 1.045764054 1.009102494 1.135118132 1.100811996 1.069793541 1.125286848 1.090248009 1 21.61175642 -5.746239338 24.99972036 1.092983401 1.022039399 0.361022854 0.040603275 226.2154323 372058.0908 0.011215546 0.01442427 1.79E-06 5.746239338 -0.070944002 RS(ph)YDVPPPPMEPDHPFYSNISK ddPTM_HeLa_A486_30min_R1 8 RSYDVPPPPMEPDHPFYSNISK 22 1 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 0 RS(0.532)Y(0.468)DVPPPPMEPDHPFYSNISK;RS(0.533)Y(0.467)DVPPPPMEPDHPFYSNISK;RS(0.956)Y(0.044)DVPPPPMEPDHPFYSNISK;RS(0.547)Y(0.453)DVPPPPMEPDHPFYSNISK;RS(0.55)Y(0.45)DVPPPPMEPDHPFYSNISK;RS(0.999)Y(0.001)DVPPPPMEPDHPFYSNISK;RS(0.998)Y(0.002)DVPPPPMEPDHPFYSNISK;RS(0.999)Y(0.001)DVPPPPMEPDHPFYSNISK ;;;;;;; 155.45 4.80E-10 4506000000 2333690 2430994 1736968 877021.5 2991800 2599249 3130163 3065665 2123600 2685849 TRUE FALSE FALSE 2170110.382 2238353.182 2409568.527 2041750.374 2616540.547 2278580.086 2346963.11 2367680.002 2307675.358 2013294.928 1.077889956 1.111786033 1.19682839 1.014133769 1.299631023 1.131766664 1.165732391 1.176022434 1.146218234 1 20.9411271 -4.530223458 23.40296559 1.149563324 1.08636393 0.048523525 0.081747107 174.2771791 555317.0484 0.019407873 0.051642547 2.95E-05 4.530223458 -0.063199394 RS(ph)YSPDGK ddPTM_HeLa_A486_30min_R1 3 RSYSPDGK 8 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 RS(0.761)Y(0.072)S(0.168)PDGK;RS(0.557)Y(0.025)S(0.419)PDGK;RS(0.639)Y(0.059)S(0.302)PDGK ;; 91.855 0.0021366 1974254000 1395520 1323770 971060 536946 1195940 1413000 1523170 1368430 1183640 1676952 TRUE FALSE FALSE 1297701.254 1218869.644 1347080.438 1250037.424 1045934.054 1238678.426 1142056.756 1056868.362 1286238.868 1257032.304 1.032353147 0.969640669 1.071635497 0.994435401 0.832066169 0.985399041 0.908534134 0.840764679 1.023234537 1 20.26159029 -5.539539542 24.99078497 0.924145213 1.021383306 0.3061737 0.063499736 258.0236123 387027.009 0.017779497 0.022959218 2.89E-06 5.539539542 0.097238093 RS(ph)YSPDGKESPSDKK ddPTM_HeLa_A485_30min_R1 2 RSYSPDGKESPSDKK 15 3 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 RS(0.715)YS(0.285)PDGKESPSDKK;RS(0.499)Y(0.001)S(0.499)PDGKES(0.002)PSDKK ; 111.4 0.0012505 1565480000 495570 419330 254140 709980 648630 707680 1349750 1582420 441190 1054720 TRUE FALSE FALSE 605807.8368 468366.9958 348156.9616 748764.4096 584050.1197 744733.0305 1061364.886 1194329.014 529732.7862 791797.7147 0.765104301 0.591523551 0.439704429 0.945651138 0.737625417 0.940559712 1.340449545 1.508376435 0.669025404 1 19.59477238 -6.371830037 2.31121521 1.169589953 0.677085037 0.412934367 0.240153207 0.282756049 2.962337557 0.09747435 0.083620306 4.25E-07 6.371830037 -0.492504916 RS(ph)YSSPDITQAIQEEEK ddPTM_HeLa_A485_30min_R1 1 RSYSSPDITQAIQEEEK 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RS(0.487)YS(0.487)S(0.026)PDITQAIQEEEK 176.65 5.05E-13 312270000 168820 177650 128240 216340 205690 179400 268880 292250 150080 253670 TRUE FALSE FALSE 206373.4266 198424.6222 175681.3125 228158.1064 185210.7814 188793.1066 211431.5915 220575.2293 180199.6794 190434.7375 1.083696333 1.041956025 0.922527659 1.198090797 0.972568261 0.991379562 1.110257479 1.158272027 0.946254249 1 17.53893714 -6.761501385 24.99999352 1.066885262 1.034809036 0.001814506 0.087594119 7.9510442 3202653.509 0.034457515 0.024937612 1.73E-07 6.761501385 -0.032076226 RS(ph)YSSPDITQAIQEEEK ddPTM_HeLa_A486_30min_R1 1 RSYSSPDITQAIQEEEK 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RS(0.495)YS(0.495)S(0.009)PDITQAIQEEEK 301.04 6.81E-69 191180000 220840 247140 134530 125430 222620 264410 335150 320730 193800 371300 TRUE FALSE FALSE 205360.2564 227555.7263 186623.6188 292007.3789 194696.9238 231789.7825 251291.9251 247706.7805 210598.74 278324.0632 0.737845855 0.817592714 0.670526352 1.04916325 0.699533204 0.832805399 0.902875311 0.889994123 0.756667381 1 18.08640612 -14 0.078624356 1.539355639 0.651642771 0.229733553 0.104584962 400.2327329 2.229119984 38.45242211 3.726750407 1.00E-14 14 -0.887712869 RSAAGS(ph)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR ddPTM_HeLa_A485_30min_R1 1 RSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR 35 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RS(0.11)AAGS(0.89)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR 104.61 6.52E-05 326600000 28982 42365 35328 23538 49835 42965 44493 61544 31516 34839 TRUE FALSE FALSE 35428.94591 47319.21822 48397.29732 24823.82134 44873.25242 45214.58096 34986.70708 46450.2375 37840.97212 26154.27846 1.354613776 1.80923432 1.85045431 0.949130421 1.715713644 1.728764226 1.337704924 1.776009136 1.446836783 1 14.67475935 -8.02475325 22.88461374 0.999999988 1.568085082 0.287490857 0.266548235 956.7249122 884501.9342 0.252138113 0.065101781 9.45E-09 8.02475325 0.568085094 RSAPGGGSKVPQK(ac)K ddPTM_HeLa_A485_30min_R1 2 RSAPGGGSKVPQKK 14 3 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 1 ; RSAPGGGSKVPQK(1)K;RSAPGGGSKVPQK(1)K 121.13 0.0001907 61873000 40689 91801 41386 19492.3 91154 148426 184209 420800 70241 43884 FALSE TRUE FALSE 49740.12767 102536.3284 56696.40362 20557.11499 82078.3877 156197.3558 144851.2423 317598.1402 84337.72441 32944.52643 1.509814621 3.112393454 1.72096581 0.62399182 2.491411977 4.741223287 4.39682272 9.640391733 2.55999201 1 15.00775117 -6.230825199 3.225110685 5.056506986 1.809558863 0.244299005 2.177128552 0.302777022 6.469726148 0.759595933 0.723289631 5.88E-07 6.230825199 -3.246948123 RSAPGGGSKVPQK(ac)K ddPTM_HeLa_A486_30min_R1 1 RSAPGGGSKVPQKK 14 3 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 1 RSAPGGGSKVPQK(1)K 88.716 0.010978 16505000 47544 21729 14269 14241 40996 20452 38535 38126 13017 41134 FALSE TRUE FALSE 44211.41112 20007.1149 19794.33894 33153.7677 35853.89941 17928.84018 28893.13542 29445.54208 14145.32404 30833.77866 1.433862894 0.648870031 0.641969288 1.075241801 1.162812375 0.5814675 0.937061128 0.954976761 0.45876064 1 14.91222408 -6.259895937 24.99600738 0.793052257 0.958575005 0.121620553 0.269013657 400.7027098 6489399.95 0.092036871 0.087400065 5.50E-07 6.259895937 0.165522748 RSAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_HeLa_A485_30min_R1 4 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 RS(0.343)AS(0.657)PDDDLGSSNWEAADLGNEER;RS(0.055)AS(0.945)PDDDLGSSNWEAADLGNEER;RS(0.049)AS(0.951)PDDDLGSSNWEAADLGNEER;RS(0.008)AS(0.992)PDDDLGSSNWEAADLGNEER ;;; 436.66 2.63E-209 14912090000 839783 1108020 1254330 873290 1424820 1207980 1346940 1539270 1049500 1194870 TRUE FALSE FALSE 1026589.831 1237593.301 1718358.864 920995.6214 1282959.918 1271227.965 1059155.266 1161761.619 1260125.023 897010.899 1.144456363 1.379685912 1.915649928 1.026738496 1.430261237 1.417182296 1.180760754 1.295147718 1.404804585 1 19.77476599 -12.83232376 0.209550967 6.31E-12 1.418524827 0.180046549 0.226627129 145.6000337 2.254799262 62.23460002 0.502949861 1.47E-13 12.83232376 1.418524827 RSAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_HeLa_A486_30min_R1 4 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 RS(0.005)AS(0.995)PDDDLGSSNWEAADLGNEER;RS(0.012)AS(0.988)PDDDLGSSNWEAADLGNEER;RS(0.006)AS(0.994)PDDDLGSSNWEAADLGNEER;RS(0.073)AS(0.927)PDDDLGSSNWEAADLGNEER ;;; 378.14 8.16E-157 11821200000 924590 1038280 865300 317133 1169460 831020 1078080 1169530 760470 1062290 TRUE FALSE FALSE 859781.0156 956002.9114 1200367.334 738301.651 1022775.422 728497.2016 808332.9812 903253.5497 826388.1519 796285.6697 1.079739406 1.200577818 1.507458164 0.927181889 1.284432787 0.91486916 1.015129384 1.134333549 1.037803622 1 19.60292657 -5.286314319 24.99865438 1.053750677 1.25639051 0.334264872 0.140358941 901.6628417 906145.1108 0.038994429 0.057866935 5.17E-06 5.286314319 0.202639833 RSAS(ph)PERMD ddPTM_HeLa_A486_30min_R1 1 RSASPERMD 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 0 RS(0.015)AS(0.985)PERMD 73.36 0.0089718 333080000 59384 76998 82135 27931 111290 65241 86651 84033 71471 63783 TRUE FALSE FALSE 55221.48826 70896.39806 113939.8717 65024.77955 97330.97046 57192.22874 64970.0033 64900.52033 77666.16383 47811.32164 1.154987697 1.482837027 2.383114872 1.360028908 2.035730599 1.196206814 1.358883232 1.357429958 1.624430389 1 15.54506467 -6.284271377 24.72375371 1.332947766 1.693115506 0.218008061 0.354120895 1185.958851 1284217.561 0.124171909 0.10958765 5.20E-07 6.284271377 0.36016774 RSAS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_A485_30min_R1 2 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.153)AS(0.847)PHDVDLCLVSPCEFEHR;RS(0.146)AS(0.854)PHDVDLCLVSPCEFEHR ; 176.68 1.66E-14 588070000 185063 258900 324970 170480 359480 251890 296290 310580 252380 288810 TRUE FALSE FALSE 226229.6259 289176.1029 445189.9261 179792.8907 323688.909 265078.5709 232985.221 234409.768 303030.351 216814.9822 1.043422478 1.333745943 2.053317173 0.829245696 1.492926853 1.222602646 1.074580819 1.081151153 1.397644886 1 17.72610493 -6.112128314 1.160812581 1.147065883 1.393071355 0.08094075 0.3143672 1.245149655 3.503567836 0.152418597 0.157756132 7.72E-07 6.112128314 0.246005472 RSAS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_A486_30min_R1 3 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.186)AS(0.814)PHDVDLCLVSPCEFEHR;RS(0.192)AS(0.808)PHDVDLCLVSPCEFEHR;RS(0.203)AS(0.797)PHDVDLCLVSPCEFEHR ;; 215.37 7.49E-29 1104420000 241845 287833 323405 34249 372662 254202 301319 313348 262840 217540 TRUE FALSE FALSE 224892.9144 265024.0648 448636.0771 79733.40285 325919.257 222841.1418 225925.7992 242005.5007 285623.1828 163066.5681 1.379147897 1.625250767 2.751244982 0.488962292 1.998688394 1.366565473 1.385482027 1.484090232 1.751574135 1 17.31510151 -5.257745505 24.99965379 1.402538091 1.889218065 0.203019383 0.505475609 587.9615918 3979227.959 0.134371181 0.221755226 5.52E-06 5.257745505 0.486679974 RSAS(ph)PHDVDLCLVSPCEFEHRK ddPTM_HeLa_A486_30min_R1 1 RSASPHDVDLCLVSPCEFEHRK 22 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.415)AS(0.585)PHDVDLCLVSPCEFEHRK 86.89 0.00075034 501590000 153270 122710 114410 35262 196900 126770 177920 174780 103070 156640 TRUE FALSE FALSE 142526.5645 112986.0127 158712.616 82091.71804 172202.966 111130.4063 133402.5342 134986.4094 112004.1906 117416.3244 1.213856465 0.962268349 1.351708263 0.699150807 1.466601572 0.9464647 1.136149805 1.149639201 0.953906462 1 16.84127348 -7.765413098 24.9345833 0.976953173 1.111328702 0.068495956 0.204193276 289.5413412 1816707.512 0.157565858 0.046614907 1.72E-08 7.765413098 0.134375529 RSASAS(ph)HQADIK ddPTM_HeLa_A485_30min_R1 3 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 RS(0.272)AS(0.272)AS(0.456)HQADIK;RS(0.299)AS(0.299)AS(0.403)HQADIK;RS(0.33)AS(0.33)AS(0.34)HQADIK ;; 126.77 2.26E-05 1673340000 973620 984190 513782 827186 741728 883010 1070850 1597230 833730 2206280 TRUE FALSE FALSE 1190198.41 1099282.459 703851.3421 872373.0766 667878.956 929243.0382 842054.1495 1205506.838 1001051.964 1656295 0.718590837 0.663699679 0.424955302 0.52670151 0.403236716 0.561037157 0.50839624 0.72783341 0.604392312 1 20.65952822 -8.458329466 0.818957102 1.001133723 0.54104572 0.625135289 0.10193616 1.027370475 1.1539119 0.109342159 0.036431946 3.48E-09 8.458329466 -0.460088003 RSASAS(ph)HQADIK ddPTM_HeLa_A486_30min_R1 1 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 RS(0.112)AS(0.112)AS(0.776)HQADIK 101.2 0.00055745 115460000 178400 151490 101420 22314 177910 140200 156920 126790 135400 171200 TRUE FALSE FALSE 165895.0813 139485.3807 140692.5401 51948.11969 155594.8689 122903.5494 117656.9563 97922.68481 147136.581 128330.4057 1.292718436 1.086923866 1.096330518 0.404799778 1.212455209 0.957711844 0.916828367 0.763051315 1.146544969 1 16.96950351 -4.683198663 2.349504476 0.914457534 1.251174324 0.21315928 0.214865636 0.470525708 4.90364528 0.057136378 0.22530242 2.07E-05 4.683198663 0.336716789 RSASPDDDLGS(ph)SNWEAADLGNEERK ddPTM_HeLa_A486_30min_R1 1 RSASPDDDLGSSNWEAADLGNEERK 25 2 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 RS(0.281)AS(0.281)PDDDLGS(0.349)S(0.089)NWEAADLGNEERK 69.201 0.0075183 162790000 99122 84443 67393 41390 88134 80488 102740 114960 67086 126280 TRUE FALSE FALSE 92174.05967 77751.42914 93489.37445 96358.01173 77079.4119 70558.2089 77033.36533 88786.11756 72901.0685 94658.66606 0.97375194 0.821387332 0.987647284 1.017952352 0.814287958 0.745396189 0.81380151 0.937960794 0.770146797 1 16.53044697 -5.779751686 24.99817785 0.837096895 0.943660825 0.251346621 0.086009039 335.574592 458091.7605 0.026634211 0.030255931 1.66E-06 5.779751686 0.106563931 RSCFES(ph)SPDPELK ddPTM_HeLa_A485_30min_R1 1 RSCFESSPDPELK 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.134)CFES(0.51)S(0.356)PDPELK 94.544 0.00073578 269590000 486710 517740 393270 662440 637080 581060 824330 849760 454760 849400 TRUE FALSE FALSE 594976.9604 578285.1893 538756.9383 698627.4198 573650.0783 611483.4031 648205.1613 641355.0276 546026.1607 637660.212 0.933062702 0.90688611 0.844896589 1.095610807 0.899617175 0.958948656 1.016536941 1.005794333 0.856296426 1 19.28242834 -5.210246149 24.99999793 0.97413837 0.896142262 0.247355206 0.064807166 519.7228993 253803.5019 0.017070245 0.02956645 6.16E-06 5.210246149 -0.077996108 RSCFES(ph)SPDPELK ddPTM_HeLa_A486_30min_R1 1 RSCFESSPDPELK 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.327)CFES(0.385)S(0.288)PDPELK 72.819 0.0055259 234990000 586810 570870 308340 270410 528370 649540 797180 740770 459790 916980 TRUE FALSE FALSE 545677.6493 525632.1821 427737.5056 629528.1458 462096.9077 569406.3588 597717.1323 572112.8419 499644.9674 687362.2395 0.79387202 0.764709133 0.622288338 0.915860822 0.672275667 0.828393424 0.869580984 0.832330915 0.726901972 1 19.39071107 -14 0.179896765 1.883167873 0.737086155 0.379838873 0.084291995 139.2574291 1.339922558 43.99726854 0.25741087 1.00E-14 14 -1.146081719 RSCFESS(ph)PDPELK ddPTM_HeLa_A485_30min_R1 1 RSCFESSPDPELK 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.101)CFES(0.388)S(0.511)PDPELK 81.157 0.0027378 350660000 453640 455520 328830 552500 574980 558640 744430 759060 429400 802830 TRUE FALSE FALSE 554550.653 508789.1015 450477.9008 582681.676 517732.9723 587889.5266 585376.4491 572899.3448 515576.6413 602699.256 0.920111726 0.844184054 0.747433975 0.966786785 0.859023746 0.975427663 0.971257959 0.950555918 0.855445956 1 19.20107876 -5.286326846 24.93793662 0.937156644 0.837937307 0.383624787 0.059496428 767.5033711 769058.067 0.016737581 0.024837975 5.17E-06 5.286326846 -0.099219336 RSCFESS(ph)PDPELK ddPTM_HeLa_A486_30min_R1 1 RSCFESSPDPELK 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.075)CFES(0.286)S(0.639)PDPELK 100.77 0.00043777 323890000 696930 611570 342120 302160 614620 702960 855740 754860 482280 964120 TRUE FALSE FALSE 648078.806 563106.9659 474598.0263 703443.7503 537528.6285 616235.9424 641624.8009 582994.8565 524084.4187 722698.0766 0.896749039 0.77917319 0.656703043 0.973357718 0.74378035 0.852687951 0.887818609 0.806692138 0.725177547 1 19.46303353 -5.257124193 24.99676482 0.844146747 0.777704917 0.108738757 0.098696985 979.79085 5675658.205 0.026372249 0.043692691 5.53E-06 5.257124193 -0.06644183 RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV ddPTM_HeLa_A485_30min_R1 1 RSDAEEVDFAGWLCSTIGLNQPSTPTHAAGV 31 1 Q02750;Q02750-2;H3BRW9 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 0 RSDAEEVDFAGWLCSTIGLNQPS(0.052)T(0.942)PT(0.005)HAAGV 155.7 4.49E-10 31495000 11636 10247 13482 11160 14464 9335.6 12188 11735 12529 13034 TRUE FALSE FALSE 14224.38806 11445.29751 18469.55283 11769.64254 13023.91337 9824.39758 9583.934233 8856.97285 15043.45538 9784.863673 1.453713463 1.169694121 1.887563634 1.20284175 1.331026554 1.004040313 0.97946528 0.905170797 1.537421049 1 13.25633604 -5.862002164 1.954409241 1.078712845 1.461933946 0.315892852 0.242674523 0.393296139 3.0829499 0.084593915 0.102480138 1.37E-06 5.862002164 0.383221102 RSDAEEVDFAGWLCSTIGLNQPSTPT(ph)HAAGV ddPTM_HeLa_A485_30min_R1 1 RSDAEEVDFAGWLCSTIGLNQPSTPTHAAGV 31 1 Q02750;Q02750-2;H3BRW9 Q02750 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 0 RSDAEEVDFAGWLCSTIGLNQPS(0.323)T(0.323)PT(0.355)HAAGV 63.901 0.0067867 23449000 5755.7 6670.9 6432.4 7158 8108.9 5848 8333.9 8693.1 6079.8 8782.9 TRUE FALSE FALSE 7036.035608 7451.003726 8812.012434 7549.023415 7301.549444 6154.192237 6553.294183 6561.103595 7299.960093 6593.484667 1.067119431 1.130055517 1.336472727 1.144921661 1.107388553 0.93337477 0.993904515 0.995088929 1.107147504 1 12.68682542 -5.98130761 3.245455188 1.005084484 1.178045865 0.509361478 0.075652161 0.207257813 4.548460518 0.02648025 0.02907968 1.04E-06 5.98130761 0.172961381 RSDLDLGYEPEGSAS(ph)PTPPYLK ddPTM_HeLa_A485_30min_R1 2 RSDLDLGYEPEGSASPTPPYLK 22 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 RSDLDLGYEPEGSAS(0.851)PT(0.149)PPYLK;RSDLDLGYEPEGS(0.002)AS(0.645)PT(0.353)PPYLK ; 188.86 5.96E-20 484970000 700190 815420 658170 688880 976280 949610 1274420 1353640 685750 1023580 TRUE FALSE FALSE 855944.8499 910776.2758 901654.4717 726511.7701 879078.1353 999330.1112 1002129.756 1021657.668 823373.7349 768420.3436 1.11390186 1.185257891 1.173387039 0.945461395 1.144006848 1.30049929 1.304142667 1.329555726 1.071514753 1 19.55153619 -6.014057266 24.6342858 1.227519005 1.106383621 0.114891768 0.115919851 921.772569 1615337.139 0.037367139 0.03884296 9.68E-07 6.014057266 -0.121135384 RSDLDLGYEPEGSAS(ph)PTPPYLK ddPTM_HeLa_A486_30min_R1 2 RSDLDLGYEPEGSASPTPPYLK 22 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 RSDLDLGYEPEGS(0.008)AS(0.774)PT(0.218)PPYLK;RSDLDLGYEPEGS(0.362)AS(0.532)PT(0.106)PPYLK ; 165.3 4.67E-14 705460000 534990 553210 365660 255090 637430 572050 710730 714010 496050 750680 TRUE FALSE FALSE 497489.9637 509371.6248 507253.3447 593862.4115 557477.5856 501476.2872 532897.8367 551445.5097 539048.0134 562704.8419 0.884104644 0.905219907 0.901455447 1.055371071 0.990710483 0.891188861 0.947029059 0.979990696 0.957958726 1 19.10201885 -5.046963874 24.9954622 0.970480492 0.896830991 0.443094295 0.039753955 403.8615272 214945.7388 0.011505162 0.019928338 8.98E-06 5.046963874 -0.073649501 RSDS(ph)IKFQHR ddPTM_HeLa_A485_30min_R1 4 RSDSIKFQHR 10 2 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 RS(0.007)DS(0.993)IKFQHR;RSDS(1)IKFQHR;RS(0.001)DS(0.999)IKFQHR;RSDS(1)IKFQHR ;;; 156.6 7.60E-07 2743970000 1723350 1971440 1418730 1466220 2379780 2138950 2943860 3388030 1661580 2361420 TRUE FALSE FALSE 2106703.262 2201982.759 1943577.265 1546315.886 2142840.747 2250942.115 2314880.262 2557110.33 1995043.865 1772761.453 1.188373799 1.242120171 1.09635578 0.872263938 1.208758654 1.269737737 1.305804714 1.442444682 1.125387661 1 20.75756699 -5.9866498 24.9914569 1.258715047 1.101052473 0.143624068 0.141667408 373.9593519 700044.594 0.044631471 0.050581121 1.03E-06 5.9866498 -0.157662574 RSDS(ph)IKFQHR ddPTM_HeLa_A486_30min_R1 3 RSDSIKFQHR 10 2 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 RS(0.001)DS(0.999)IKFQHR;RS(0.003)DS(0.997)IKFQHR;RSDS(1)IKFQHR ;; 179.46 7.55E-10 1595740000 1283120 1129180 756600 543390 1359620 1208760 1658710 1704910 825470 1432670 TRUE FALSE FALSE 1193179.914 1039699.664 1049575.782 1265039.381 1189083.782 1059635.481 1243683.214 1316739.211 897022.4042 1073920.107 1.111050912 0.96813502 0.977331345 1.177964146 1.107236725 0.986698614 1.158077967 1.226105371 0.835278526 1 20.03445524 -3.913781205 19.66786894 1.059502437 3.671249097 0.018667689 0.113138324 2081.898822 483445.3285 0.026883989 4335.452725 0.00012196 3.913781205 2.61174666 RSDS(ph)LLSFR ddPTM_HeLa_A485_30min_R1 9 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 RSDS(1)LLSFR;RSDS(1)LLSFR;RSDS(1)LLSFR;RSDS(1)LLSFR;RS(0.052)DS(0.893)LLS(0.055)FR;RSDS(1)LLSFR;RSDS(0.986)LLS(0.014)FR;RSDS(1)LLSFR;RSDS(1)LLSFR ;;;;;;;; 201.38 4.98E-10 10170870000 2210742 2536373 2786256 2172459 3186145 2511761 2597982 2520392 2554275 3153759 TRUE FALSE FALSE 2702513.931 2832979.759 3817008.04 2291134.934 2868921.217 2643272.922 2042901.922 1902261.91 3066894.563 2367584.922 1.141464412 1.196569438 1.612194775 0.967709717 1.211750079 1.116442708 0.862863209 0.803460899 1.295368346 1 21.17498474 -5.995729178 1.272151172 0.986107912 1.276134051 0.24478642 0.192694918 0.598153218 2.015891175 0.084811864 0.096782316 1.01E-06 5.995729178 0.290026139 RSDS(ph)LLSFR ddPTM_HeLa_A486_30min_R1 6 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 RSDS(1)LLSFR;RSDS(1)LLSFR;RSDS(1)LLSFR;RSDS(1)LLSFR;RS(0.005)DS(0.989)LLS(0.006)FR;RSDS(1)LLSFR ;;;;; 200.82 5.18E-10 9141960000 1811615 2086685 1846526 776229 2318409 1891227 2113803 2164862 1868878 2040086 TRUE FALSE FALSE 1684630.144 1921328.481 2561550.319 1807100.34 2027612.525 1657906.641 1584907.132 1671970.181 2030873.85 1529235.187 1.101616127 1.256398295 1.675053217 1.18170204 1.325899732 1.08414105 1.03640509 1.093337503 1.328032383 1 20.54437887 -6.258296854 24.25958929 1.109718162 1.31862011 0.274015137 0.162111966 253.9996595 1960825.225 0.055957694 0.053659934 5.52E-07 6.258296854 0.208901948 RSDS(ph)MTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_HeLa_A485_30min_R1 2 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RS(0.156)DS(0.689)MT(0.156)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR;RS(0.153)DS(0.839)MT(0.008)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ; 297.93 2.36E-94 6188900000 352140 624630 656100 414650 688050 582530 685160 789540 577530 562350 TRUE FALSE FALSE 430472.3281 697675.0449 898818.6926 437301.2796 619545.3261 613030.37 538769.9688 595904.077 693434.9736 422166.4943 1.019674308 1.652606387 2.129062123 1.035850276 1.46753789 1.452105694 1.276202579 1.411538066 1.642562787 1 18.68745256 -5.301255289 24.99977605 1.352699104 1.605665261 0.137127876 0.309956088 1094.601495 687280.6685 0.087050066 0.129118271 5.00E-06 5.301255289 0.252966156 RSDS(ph)MTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_HeLa_A486_30min_R1 2 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RS(0.179)DS(0.642)MT(0.179)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR;RS(0.1)DS(0.45)MT(0.45)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ; 210.31 2.49E-30 4821310000 135841 179883 182391 76063 273040 166612 181186 245138 161729 185719 TRUE FALSE FALSE 126319.2474 165628.416 253017.6798 177078.508 238792.7772 146057.1054 135851.3464 189325.4287 175747.7999 139213.7536 0.907376205 1.189741758 1.817476171 1.27199004 1.715295875 1.049157154 0.975847163 1.3599621 1.2624313 1 17.08694222 -6.325879009 24.99995292 1.142375067 1.388052144 0.183810961 0.263398971 398.4031398 154562.6962 0.09605042 0.084708517 4.72E-07 6.325879009 0.245677077 RSDS(ph)PEIPFQAAAGPSDGLDAS(ph)SPGNSFVGLR ddPTM_HeLa_A486_30min_R1 1 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 RS(0.184)DS(0.816)PEIPFQAAAGPS(0.004)DGLDAS(0.613)S(0.376)PGNS(0.007)FVGLR 95.786 8.85E-05 185040000 111830 120570 124510 55062 183330 151410 175130 173230 135700 171180 TRUE FALSE FALSE 103991.2945 111015.5941 172723.6065 128187.1187 160335.0419 132730.5736 131310.6217 133789.3106 147462.5853 128315.4138 0.810434938 0.865177384 1.34608619 0.999000158 1.249538439 1.034408647 1.023342541 1.042659698 1.149219575 1 16.96933496 -4.554240977 24.3299272 1.103099459 0.824120466 0.493502903 0.109087124 94.48624268 73299.39579 0.026385036 0.069809902 2.79E-05 4.554240977 -0.278978993 RSDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_A485_30min_R1 3 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RS(0.042)DS(0.958)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.008)DS(0.992)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.086)DS(0.913)PEIPFQAAAGPSDGLDASSPGNSFVGLR ;; 311.81 1.92E-109 8389600000 252316 369707 388684 293951 458193 456100 553072 581691 378447 401075 TRUE FALSE FALSE 308442.8237 412941.0176 532474.3861 310008.7988 412573.6961 479980.6907 434903.649 439030.3702 454397.8416 301094.3837 1.024405769 1.371467021 1.768463362 1.029606713 1.370247067 1.594120371 1.444409702 1.458115441 1.509154159 1 18.19985627 -4.276807938 5.105025004 1.417222586 1.01003991 0.195166117 0.221969716 0.223193864 18.3817306 0.053220354 0.308608448 5.29E-05 4.276807938 -0.407182676 RSDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_A486_30min_R1 2 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RS(0.181)DS(0.819)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.009)DS(0.991)PEIPFQAAAGPSDGLDASSPGNSFVGLR ; 266.37 2.84E-64 1925810000 197749 261970 305540 98689 392410 304220 345020 372430 272880 291280 TRUE FALSE FALSE 183887.8163 241210.5431 423853.2706 229752.9795 343190.2787 266688.4295 258692.3468 287635.8191 296533.4581 218341.5921 0.842202416 1.104739325 1.94123926 1.052263919 1.571804416 1.221427521 1.184805626 1.317366134 1.358117138 1 17.73622745 RSDS(ph)PENKYSDSTGHSK ddPTM_HeLa_A485_30min_R1 8 RSDSPENKYSDSTGHSK 17 2 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3;E9PMZ7;C9JMU2 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 RS(0.001)DS(0.893)PENKYS(0.106)DSTGHSK;RS(0.001)DS(0.999)PENKYSDSTGHSK;RS(0.002)DS(0.998)PENKYSDSTGHSK;RS(0.184)DS(0.789)PENKY(0.001)S(0.008)DS(0.008)T(0.008)GHSK;RS(0.001)DS(0.999)PENKYSDSTGHSK;RS(0.007)DS(0.982)PENKYS(0.009)DS(0.001)T(0.001)GHSK;RSDS(1)PENKYSDSTGHSK;RSDS(1)PENKYSDSTGHSK ;;;;;;; 273.96 1.06E-59 8672542000 1332878 1742518 1090755 1024969 2187335 2115210 3014886 3708550 1429004 1945210 TRUE FALSE FALSE 1629372.113 1946290.322 1494270.665 1080960.461 1969556.247 2225959.125 2370730.977 2799022.298 1715791.995 1460304.946 1.115775248 1.332797186 1.023259333 0.740229268 1.348729423 1.524311159 1.623449255 1.916738217 1.174954587 1 20.47783824 -5.989704025 24.15319792 1.507310466 1.067574753 0.313124051 0.270373411 153.7252331 360618.1586 0.083755441 0.094855671 1.02E-06 5.989704025 -0.439735713 RSDS(ph)PENKYSDSTGHSK ddPTM_HeLa_A486_30min_R1 7 RSDSPENKYSDSTGHSK 17 2 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3;E9PMZ7;C9JMU2 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 RSDS(0.979)PENKYS(0.016)DS(0.005)TGHSK;RSDS(0.999)PENKYS(0.001)DSTGHSK;RS(0.004)DS(0.995)PENKYS(0.001)DSTGHSK;RS(0.002)DS(0.998)PENKYSDSTGHSK;RSDS(0.999)PENKYS(0.001)DSTGHSK;RS(0.002)DS(0.998)PENKYSDSTGHSK;RS(0.004)DS(0.849)PENKYS(0.132)DS(0.009)T(0.006)GHSK ;;;;;; 260.48 6.30E-52 3189113000 2844608 2320878 1408459 208724.9 2909289 2378417 3387726 3238439 1958895 2235009 TRUE FALSE FALSE 2645215.669 2136963.175 1953852.045 485922.1156 2544378.846 2084992.093 2540081.123 2501117.134 2128693.596 1675348.199 1.578905012 1.275533752 1.166236395 0.290042462 1.518716436 1.244512689 1.516151165 1.492893917 1.270597716 1 20.67602954 RSDS(ph)VSASER ddPTM_HeLa_A485_30min_R1 2 RSDSVSASER 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RS(0.008)DS(0.991)VSASER;RS(0.001)DS(0.981)VS(0.018)ASER ; 132.51 3.88E-05 356980000 55175 73767 75676 66600 105705 83430 91838 91510 70131 70267 TRUE FALSE FALSE 67448.4884 82393.40896 103671.7015 70238.18936 95180.63905 87798.26579 72216.06105 69067.02902 84205.64842 52750.73007 1.278626633 1.561938742 1.965313113 1.331511228 1.804347332 1.664399065 1.369005907 1.309309443 1.596293517 1 15.68690344 -8.798177345 0.469681339 0.951202205 1.603756105 0.371401747 0.214034167 3.334798002 1.093120906 0.57179185 0.121172709 1.59E-09 8.798177345 0.6525539 RSDS(ph)VSASER ddPTM_HeLa_A486_30min_R1 2 RSDSVSASER 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RSDS(0.998)VS(0.001)ASER;RSDS(0.998)VS(0.002)ASER ; 140.61 7.08E-06 206450000 55659 57455 55589 24954.2 68651 62552 66325 84964 61893 69152 TRUE FALSE FALSE 51757.59152 52902.05655 77114.54953 58094.63872 60040.15143 54834.97022 49729.78349 65619.55195 67257.93507 51835.8891 0.99848951 1.020568133 1.487667152 1.120741628 1.158273784 1.057857233 0.959369741 1.265909645 1.297516764 1 15.66166369 -10.73258085 2.89974637 0.974510358 1.15204612 0.081225164 0.153182463 60061710.82 42004858.1 10867911.53 0.039115708 1.85E-11 10.73258085 0.177535762 RSDSMT(ph)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_HeLa_A485_30min_R1 1 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RS(0.073)DS(0.346)MT(0.581)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 194.87 1.76E-22 482840000 11587 17700 19470 15179 18507 18258 19029 24643 12813 16911 TRUE FALSE FALSE 14164.48818 19769.86103 26672.76321 16008.19033 16664.3781 19213.96065 14963.2987 18599.26561 15384.45157 12695.39892 1.115718243 1.557246145 2.100978738 1.260944255 1.312631308 1.513458597 1.178639505 1.465039872 1.211813167 1 13.63201811 -7.878869063 0.38566982 0.976872457 1.545168386 0.237887161 0.258582497 1.986158938 0.839993807 0.416022216 0.247017582 1.32E-08 7.878869063 0.568295929 RSDSMT(ph)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR ddPTM_HeLa_A486_30min_R1 1 RSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 38 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RS(0.091)DS(0.344)MT(0.566)FLGCIPPNPFEVPLAEAIPLADQPHLLQPNAR 180.19 1.43E-21 456740000 5505.4 3630.8 3057.7 2032.1 7283.2 4985.6 4845.9 6014.9 2509.8 5851 TRUE FALSE FALSE 5119.49989 3343.082185 4241.723328 4730.831497 6369.673143 4370.527362 3633.404565 4645.438574 2727.351485 4385.871516 1.167270831 0.762238969 0.967133513 1.07865255 1.452316403 0.996501458 0.828433882 1.059182549 0.62184938 1 12.09864783 -6.528907291 22.44021613 0.886607993 1.07698393 0.202578534 0.193979781 85.22347593 317213.7598 0.07698492 0.05988344 2.96E-07 6.528907291 0.190375936 RSDSVS(ph)ASER ddPTM_HeLa_A485_30min_R1 1 RSDSVSASER 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RSDS(0.052)VS(0.895)AS(0.052)ER 100.04 0.0045405 80795000 71099 100590 116450 68357 131570 96636 110010 133350 93276 87900 TRUE FALSE FALSE 86914.72726 112353.1255 159529.7009 72091.16982 118470.4288 101695.7115 86505.4648 100645.7034 111995.6376 65988.14768 1.317126337 1.702625842 2.417550825 1.092486641 1.795328904 1.54112087 1.310924277 1.525208798 1.697208386 1 16.0099193 -11.77630776 0.2000546 7.80E-12 1.732889804 0.218207305 0.340233729 77.86713057 1.714351765 34.75925276 0.890324604 1.67E-12 11.77630776 1.732889804 RSEACPCQPDSGS(ph)PLPAEEEK ddPTM_HeLa_A485_30min_R1 1 RSEACPCQPDSGSPLPAEEEK 21 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RSEACPCQPDS(0.001)GS(0.999)PLPAEEEK 146.46 1.08E-09 873940000 223540 154270 107180 321260 139720 195580 311140 258400 130680 619580 TRUE FALSE FALSE 273265.7018 172310.5345 146830.3421 338809.6203 125808.9862 205820.2664 244662.3972 195026.9948 156906.2773 465130.1085 0.58750379 0.370456634 0.315675849 0.728419025 0.270481278 0.442500416 0.526008514 0.419295572 0.337338466 1 18.8272748 -10.37718467 3.198665306 1.00564372 0.443113997 0.61752941 0.131223726 60765284.56 80422139.51 3191318.789 0.034918969 4.20E-11 10.37718467 -0.562529723 RSEACPCQPDSGS(ph)PLPAEEEK ddPTM_HeLa_A486_30min_R1 3 RSEACPCQPDSGSPLPAEEEK 21 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RSEACPCQPDS(0.02)GS(0.98)PLPAEEEK;RSEACPCQPDS(0.006)GS(0.994)PLPAEEEK;RSEACPCQPDS(0.009)GS(0.991)PLPAEEEK ;; 212.77 2.02E-27 2305410000 644780 744200 474560 312321 839560 862640 874020 807800 786560 1576700 TRUE FALSE FALSE 599584.2516 685226.8817 658322.3412 727099.0718 734254.5562 756216.2475 655330.9516 623881.5742 854739.6541 1181884.057 0.507312243 0.579775044 0.557010933 0.615203384 0.621257687 0.639839621 0.554479898 0.52787037 0.723200934 1 20.17265708 -8.073804451 3.713727236 0.999764328 0.579985431 0.912868243 0.040143216 0.088930523 3.039585717 0.041234831 0.010870653 8.44E-09 8.073804451 -0.419778897 RSEAS(ph)KR ddPTM_HeLa_A485_30min_R1 2 RSEASKR 7 2 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 RSEAS(1)KR;RSEAS(1)KR ; 89.296 0.0049397 1563730000 174528 276360 254600 167615 250930 224030 215610 221910 198508 255620 TRUE FALSE FALSE 213351.1515 308677.898 348787.1348 176771.383 225946.5281 235759.8644 169543.1621 167486.2246 238346.7348 191898.6383 1.111790857 1.608546578 1.817559196 0.921170596 1.177426427 1.228564551 0.883503727 0.872784851 1.242044951 1 17.54998495 -5.274382378 24.99046923 1.047448526 1.522223659 0.516846987 0.206464945 590.8171917 1140754.175 0.059219453 0.0884594 5.32E-06 5.274382378 0.474775133 RSEAS(ph)KR ddPTM_HeLa_A486_30min_R1 2 RSEASKR 7 2 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 RSEAS(1)KR;RSEAS(1)KR ; 86.472 0.0053928 1249780000 222620 270370 220280 60335 218170 200036 214516 218155 190986 237790 TRUE FALSE FALSE 207015.4876 248944.8965 305578.3153 140462.9292 190805.0842 175357.5921 160841.8279 168485.8688 207540.8203 178245.8362 1.161404339 1.396637934 1.714364395 0.78802923 1.07046026 0.983796288 0.902359524 0.945244345 1.164351575 1 17.44350885 -5.269684096 24.98980695 0.977691003 1.4213858 0.633301968 0.155152144 373.806798 1133011.392 0.043468957 0.065714599 5.37E-06 5.269684096 0.443694797 RSEASPHENT(ph)NHKSPHK ddPTM_HeLa_A485_30min_R1 1 RSEASPHENTNHKSPHK 17 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 RSEASPHENT(0.569)NHKS(0.431)PHK 76.155 0.0071943 25169000 31367 15618 13098 33617 24914 17479 25858 18136 25273 52789 TRUE FALSE FALSE 38344.48094 17444.38924 17943.49525 35453.41159 22433.47468 18394.17341 20333.22706 13688.11756 30345.05928 39629.67381 0.967569936 0.440185032 0.452779282 0.8946178 0.566077702 0.464151522 0.513080858 0.345400712 0.765715596 1 15.27429347 -8.003691791 23.69403659 1.000000032 0.574174867 0.326097488 0.189307768 68.35474578 438710.0245 0.180862682 0.046698544 9.92E-09 8.003691791 -0.425825164 RSEASPHENTNHKS(ph)PHK ddPTM_HeLa_A485_30min_R1 1 RSEASPHENTNHKSPHK 17 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 RSEASPHENT(0.007)NHKS(0.993)PHK 148.89 3.11E-08 30588000 38391 19774 19852 45037 33881 20173 33382 24597 32114 72369 TRUE FALSE FALSE 46930.9455 22086.39729 27196.08091 47497.25727 30507.68868 21229.22709 26249.66299 18564.54718 38558.98523 54328.74015 0.863832759 0.406532477 0.500583684 0.874256556 0.561538673 0.390755004 0.483163477 0.341707669 0.709734574 1 15.72942797 -8.010579265 24.00356794 1.000000013 0.547980695 0.38506639 0.173241481 296.6855213 673159.5923 0.169308443 0.043715252 9.76E-09 8.010579265 -0.452019318 RSEASPHENTNHKS(ph)PHK ddPTM_HeLa_A486_30min_R1 2 RSEASPHENTNHKSPHK 17 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 RSEASPHENT(0.175)NHKS(0.825)PHK;RSEASPHENT(0.244)NHKS(0.756)PHK ; 123.43 1.18E-05 69617000 75889 53322 35616 7763.3 46064 99411 87140 72853 66528 62358 TRUE FALSE FALSE 70569.57299 49096.57052 49407.46903 18073.35474 40286.22359 87146.68156 65336.65033 56265.96227 72294.70061 46743.15092 1.509730765 1.050347903 1.056999112 0.38665247 0.86186367 1.864373279 1.397780189 1.203726346 1.546637297 1 15.51246737 -6.225346229 24.9929304 1.414941303 0.949487774 0.294342534 0.331131532 749.9150881 519283.6679 0.113215616 0.113211952 5.95E-07 6.225346229 -0.465453529 RSECNMCNT(ph)PK ddPTM_HeLa_A485_30min_R1 2 RSECNMCNTPK 11 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 RSECNMCNT(1)PK;RSECNMCNT(1)PK ; 91.845 0.002196 601480000 404690 381990 303470 634030 582270 425340 598540 619810 356010 804270 TRUE FALSE FALSE 494711.8943 426660.4076 415736.1814 668665.4535 524297.1543 447610.1447 470657.0394 467800.6257 427457.9415 603780.2905 0.819357475 0.706648452 0.688555403 1.107464858 0.868357518 0.741346069 0.779517064 0.774786181 0.707969353 1 19.20366414 -11.21140953 2.254599503 1.595064828 0.801431843 0.213047858 0.115636221 10585107.46 1650704.558 32233930.5 0.031388094 6.15E-12 11.21140953 -0.793632985 RSECNMCNT(ph)PK ddPTM_HeLa_A486_30min_R1 3 RSECNMCNTPK 11 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 RSECNMCNT(1)PK;RSECNMCNT(1)PK;RS(0.001)ECNMCNT(0.999)PK ;; 85.976 0.0029079 1111760000 1054640 1120130 636890 702640 1175410 1293670 1622930 1526040 838840 1722700 TRUE FALSE FALSE 980715.1822 1031366.819 883510.8645 1635781.429 1027979.118 1134070.148 1216855.748 1178594.005 911551.3266 1291324.707 0.75946443 0.798688985 0.684189546 1.266746791 0.796065553 0.878222295 0.942331345 0.912701506 0.705904039 1 20.30042039 RSEDES(ph)ET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_A485_30min_R1 1 RSEDESETEDEEEKSQEDQEQK 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 RS(0.02)EDES(0.987)ET(0.992)EDEEEKS(0.001)QEDQEQK 77.51 0.0038583 6881800000 277430 149260 95076 684830 263960 249350 525460 379880 156680 869180 TRUE FALSE FALSE 339143.3464 166714.6586 130248.5688 722240.5288 237679.2156 262405.5804 413191.1784 286713.8344 188124.2388 652509.4221 0.519752413 0.255497703 0.199611783 1.106866053 0.364254074 0.402148339 0.633234041 0.43940183 0.288308847 1 19.31563921 -10.95429975 2.516777364 1.405579467 0.471418795 0.296900929 0.245693208 125721248.2 59910557.52 298055276.6 0.061237569 1.11E-11 10.95429975 -0.934160672 RSEDES(ph)ET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_A485_30min_R1 1 RSEDESETEDEEEKSQEDQEQKR 23 3 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 RS(0.043)EDES(0.976)ET(0.954)EDEEEKS(0.026)QEDQEQKR 100.06 0.0058342 1643300000 433330 275330 179440 957470 395000 355590 723920 696800 255340 1307300 TRUE FALSE FALSE 529722.7635 307527.4484 245822.3231 1009774.162 355672.4131 374208.1426 569248.5781 525908.7075 306584.3959 981414.1691 0.53975455 0.313351344 0.250477659 1.028897069 0.362408068 0.381294824 0.580028897 0.535868264 0.312390432 1 19.90450257 -10.0602324 4.341301465 1.000040531 0.481345278 0.35233723 0.212169633 177002030.5 393766868.5 112628.0779 0.052782843 8.70E-11 10.0602324 -0.518695253 RSEDES(ph)ET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_A486_30min_R1 1 RSEDESETEDEEEKSQEDQEQKR 23 3 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 RS(0.001)EDES(0.999)ET(1)EDEEEKSQEDQEQKR 99.34 0.0064712 3341000000 597420 473700 165040 591970 380910 697110 1007300 914460 329920 1390800 TRUE FALSE FALSE 555543.9431 436162.2868 228947.9079 1378136.077 333132.716 611107.6559 755262.8859 706257.4205 358517.7312 1042534.627 0.532878169 0.418367194 0.219607006 1.321909163 0.319541152 0.586174924 0.724448729 0.67744265 0.343890478 1 19.99166387 -11.39756582 2.272808732 4.369591873 0.579419693 0.160275224 0.293693424 8142462.695 974330.9273 141113381.7 0.07623253 4.00E-12 11.39756582 -3.79017218 RSEDES(ph)ETEDEEEKSQEDQEQK ddPTM_HeLa_A486_30min_R1 1 RSEDESETEDEEEKSQEDQEQK 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 RS(0.001)EDES(0.726)ET(0.273)EDEEEKSQEDQEQK 98.967 5.84E-06 0 67414 55546 20920 49154 33620 72339 112270 86828 38207 167570 TRUE FALSE FALSE 62688.62673 51144.33266 29020.78426 114432.9961 29403.06611 63414.54967 84178.85853 67059.15984 41518.81352 125609.3813 0.499075993 0.407169689 0.231039943 0.911022687 0.234083361 0.504855203 0.670163786 0.533870632 0.330539113 1 16.93858469 -11.23648094 2.246712095 2.753625612 0.484049011 0.392568484 0.193922227 16647708.45 2927140.196 148237593.4 0.04753492 5.80E-12 11.23648094 -2.269576601 RSEEHS(ph)PPR ddPTM_HeLa_A485_30min_R1 3 RSEEHSPPR 9 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RSEEHS(1)PPR;RSEEHS(1)PPR;RSEEHS(1)PPR ;; 95.094 0.0016041 1690614000 86629 121554 97610 67286 122978 111458 111102 131408 113296 93971 TRUE FALSE FALSE 105899.3222 135768.6829 133720.0009 70961.6638 110733.8785 117293.7685 87364.15008 99179.98196 136033.468 70545.75911 1.501143705 1.924547764 1.895507293 1.005895531 1.569674491 1.662662221 1.238403997 1.405895737 1.928301144 1 16.10627174 -12.0793442 0.237072504 2.57E-46 1.628247572 0.23245083 0.29334369 96.68320208 2.182269129 50.54948096 0.51654157 8.33E-13 12.0793442 1.628247572 RSEEHS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 RSEEHSPPR 9 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RS(0.002)EEHS(0.998)PPR;RS(0.006)EEHS(0.994)PPR ; 100.04 0.0011297 917660000 142849 88895 152609 23184 145013 164722 131159 107315 142343 111722 TRUE FALSE FALSE 132836.0228 81850.63645 211703.2918 53973.52365 126824.1173 144400.2744 98341.63094 82881.71717 154681.4058 83746.08401 1.586175931 0.977366732 2.5279187 0.644490119 1.514388629 1.724263004 1.174283336 0.989678719 1.847028523 1 16.35373411 -12.82017348 0.170524003 2.53E-11 1.533428419 0.05838418 0.509201739 274.0390487 3.730900857 98.55586345 1.849047501 1.51E-13 12.82017348 1.533428419 RSELIAK ddPTM_HeLa_A485_30min_R1 1 RSELIAK 7 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 84.498 0.021681 121390000 89893 91485 89242 70453 119680 103930 115070 139720 99990 97764 FALSE FALSE TRUE 109889.3877 102183.3749 122256.3295 74301.66899 107764.239 109371.6141 90484.35446 105453.4509 120057.0758 73393.23401 1.497268641 1.392272412 1.665771118 1.012377639 1.468312991 1.490213854 1.232870518 1.436827963 1.635805772 1 16.16335945 -10.41764052 3.304870674 0.995043094 1.417464977 0.334898313 0.179654013 89474696.39 106185422.8 4087105.607 0.046381137 3.82E-11 10.41764052 0.422421883 RSES(ph)PPAELPSLR ddPTM_HeLa_A486_30min_R1 1 RSESPPAELPSLR 13 1 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 RS(0.12)ES(0.88)PPAELPSLR 123.63 1.98E-05 330570000 122580 144450 134690 46171 148200 123100 133640 130760 123060 115860 TRUE FALSE FALSE 113987.775 133003.2559 186845.5751 107488.4214 129611.3741 107913.1736 100201.8585 100988.8025 133726.9399 86847.90188 1.312498892 1.531450421 2.151411503 1.237662845 1.492394995 1.242553605 1.15376257 1.162823745 1.539783196 1 16.40620338 RSET(ph)PPHWR ddPTM_HeLa_A485_30min_R1 3 RSETPPHWR 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 RS(0.001)ET(0.999)PPHWR;RSET(1)PPHWR;RS(0.157)ET(0.843)PPHWR ;; 99.844 0.0016561 2308560000 139293 230253 294990 142245 259017 182931 235969 245325 203350 175007 TRUE FALSE FALSE 170278.2473 257179.0854 404119.0766 150015.4842 233228.358 192508.9843 185552.2955 185158.6591 244160.4798 131380.9757 1.296064719 1.957506284 3.075932984 1.141835668 1.77520647 1.465272908 1.412322405 1.40932626 1.858415791 1 17.00339686 RSET(ph)PPHWR ddPTM_HeLa_A486_30min_R1 4 RSETPPHWR 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 RS(0.069)ET(0.931)PPHWR;RS(0.007)ET(0.993)PPHWR;RS(0.077)ET(0.923)PPHWR;RS(0.005)ET(0.995)PPHWR ;;; 85.554 0.003869 3470340000 609801 712290 735937 172271 876850 589152 562804 632095 597044 524080 TRUE FALSE FALSE 567057.0989 655845.5463 1020911.515 401055.5941 766867.2967 516468.4163 421984.4865 488180.767 648796.2546 392846.9568 1.443455496 1.669468313 2.598751238 1.020895255 1.95207646 1.314680965 1.07417018 1.242674173 1.651524196 1 18.58360786 -6.361419422 6.317376735 1.254506824 1.740258638 0.259852241 0.406069517 0.354672088 18.93897656 0.142688544 0.125469527 4.35E-07 6.361419422 0.485751814 RSFS(ph)KEVEER ddPTM_HeLa_A485_30min_R1 1 RSFSKEVEER 10 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 RS(0.019)FS(0.981)KEVEER 126.95 4.60E-05 238590000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RSFS(ph)KEVEER ddPTM_HeLa_A486_30min_R1 4 RSFSKEVEER 10 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 RS(0.298)FS(0.702)KEVEER;RS(0.009)FS(0.991)KEVEER;RS(0.227)FS(0.773)KEVEER;RS(0.169)FS(0.831)KEVEER ;;; 136.3 1.82E-05 1670680000 1683580 1789710 1164870 1388620 2403800 2292420 3317590 3307180 1452230 3078140 TRUE FALSE FALSE 1565569.736 1647886.862 1615938.86 3232777.537 2102292.989 2009604.528 2487493.892 2554207.309 1578110.466 2307353.709 0.678513108 0.714189097 0.700342931 1.401075841 0.911127315 0.870956421 1.078072201 1.106985591 0.683948222 1 21.13780775 -5.089858196 25 1.00865693 0.698984161 0.399312343 0.174101739 62.82937511 17477.67792 0.046390222 0.080350265 8.13E-06 5.089858196 -0.309672769 RSFS(ph)SQRPVDR ddPTM_HeLa_A486_30min_R1 1 RSFSSQRPVDR 11 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 RS(0.183)FS(0.492)S(0.324)QRPVDR 72.47 0.0084986 1100000000 498770 531610 459570 167180 633580 449110 510340 548870 402210 465940 TRUE FALSE FALSE 463808.7987 489483.2875 637527.8117 389203.4888 554110.4885 393703.3744 382647.5342 423904.2827 437073.8866 349265.5912 1.327954457 1.401464386 1.82533816 1.114348217 1.586501798 1.127232067 1.095577531 1.213701817 1.251408377 1 18.41396499 -6.275533632 24.69269167 1.148314896 1.450442877 0.426608621 0.181534347 697.6857405 1222320.125 0.062304901 0.055222275 5.30E-07 6.275533632 0.302127982 RSFS(ph)SQRPVVDR ddPTM_HeLa_A485_30min_R1 1 RSFSSQRPVVDR 12 2 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 RS(0.124)FS(0.732)S(0.144)QRPVVDR 65.225 0.013209 191580000 86615 119010 127660 78518 163860 126540 145720 170540 103010 116460 TRUE FALSE FALSE 105882.2079 132927.1843 174886.7464 82807.23952 147545.5231 133165.4387 114585.7316 128714.7976 123683.1621 87428.66529 1.211069706 1.520407338 2.000336455 0.947140612 1.68761038 1.523132468 1.310619706 1.472226497 1.414675172 1 16.41581875 -10.63597797 0.361202504 0.638658931 1.489861397 0.211440775 0.26435518 43.28208684 2.960057749 14.05241653 0.196806714 2.31E-11 10.63597797 0.851202466 RSFSS(ph)QRPVDR ddPTM_HeLa_A485_30min_R1 1 RSFSSQRPVDR 11 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 RS(0.111)FS(0.142)S(0.746)QRPVDR 80.441 0.0048729 1133000000 463350 627300 550360 415320 686670 598470 721740 780820 509910 520950 TRUE FALSE FALSE 566420.609 700657.2782 753961.0664 438007.88 618302.7238 629804.9638 567534.3529 589322.6707 612244.2598 391086.7524 1.448324714 1.791564848 1.927861432 1.119976264 1.580986111 1.610397079 1.451172533 1.50688477 1.565494756 1 18.57712914 -11.9208358 0.233664133 9.39E-15 1.636101486 0.408409056 0.202131328 56.56401494 1.346923997 28.65521864 0.366993028 1.20E-12 11.9208358 1.636101486 RSFSS(ph)QRPVVDR ddPTM_HeLa_A486_30min_R1 1 RSFSSQRPVVDR 12 2 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 RS(0.264)FS(0.327)S(0.409)QRPVVDR 56.147 0.027369 287710000 115230 135350 119030 47000 155510 97636 124960 129790 109700 144610 TRUE FALSE FALSE 107152.972 124624.3731 165121.6037 109418.3752 136004.4857 85590.66301 93693.68631 100239.6503 119208.8843 108398.7147 0.988507772 1.14968497 1.523280088 1.009406574 1.254668803 0.789591124 0.864343148 0.924730985 1.099725994 1 16.72598813 -6.251391699 24.88341202 0.926515491 1.192167577 0.384185598 0.15755771 689.3060479 1707090.247 0.053083711 0.052484072 5.61E-07 6.251391699 0.265652087 RSGKNS(ph)QEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A485_30min_R1 2 RSGKNSQEDSEDSEDKDVK 19 3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 RS(0.445)GKNS(0.574)QEDS(0.982)EDS(1)EDKDVK;RS(0.395)GKNS(0.609)QEDS(0.996)EDS(1)EDKDVK ; 99.711 0.0001867 325911000 169493 128902 79855 625170 179653 180136 421010 312170 111424 860760 TRUE FALSE FALSE 207196.1331 143975.9676 109396.6875 659321.4541 161766.1165 189567.6424 331057.7742 235609.818 133785.7748 646188.3731 0.320643549 0.222808044 0.169295351 1.02032392 0.250338946 0.293362818 0.512323941 0.364614759 0.20703835 1 19.30159527 -10.18341953 3.355235186 1.001120359 0.379862258 0.388915838 0.235501079 63635847.38 97400548.81 761739.8648 0.060619333 6.56E-11 10.18341953 -0.6212581 RSGKNS(ph)QEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A486_30min_R1 1 RSGKNSQEDSEDSEDKDVK 19 3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 RS(0.003)GKNS(0.997)QEDS(1)EDS(1)EDKDVK 126.99 3.67E-06 570780000 659370 514580 110760 1859200 401600 940080 1822300 1388500 334560 3260000 TRUE FALSE FALSE 613151.568 473802.8067 153649.2383 4328311.559 351227.5832 824102.4876 1366341.266 1072368.861 363559.9302 2443674.781 0.250913736 0.193889469 0.062876304 1.771230604 0.143729266 0.33723902 0.559133841 0.438834525 0.148775906 1 21.22062086 -11.35082784 2.093046428 3.994861913 0.447847101 0.114800338 0.470048423 28196947.57 2968765.38 399810120.2 0.125335944 4.46E-12 11.35082784 -3.547014812 RSGS(ph)PLEK ddPTM_HeLa_A485_30min_R1 1 RSGSPLEK 8 1 B1AKL4;Q9NRA8;Q9NRA8-3;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 RS(0.004)GS(0.996)PLEK 89.356 0.0023889 411210000 457310 426750 233160 613820 310020 490560 554820 712020 441560 796910 TRUE FALSE FALSE 559037.0318 476654.7003 319415.5866 647351.4323 279153.3203 516244.9631 436278.1745 537395.9786 530177.0418 598255.003 0.934446062 0.796741687 0.533912103 1.082066057 0.466612596 0.86291792 0.729251193 0.898272435 0.88620578 1 19.19040103 -7.701008992 1.30878122 0.988427887 0.766257565 0.154067757 0.170096854 0.74857284 2.505929429 0.150178047 0.048155266 1.99E-08 7.701008992 -0.222170322 RSHRMRR ddPTM_HeLa_A485_30min_R1 4 RSHRMRR 7 3 K7EKF8;O14594 K7EKF8 NCAN Neurocan core protein 0 0 ;;; ;;; 70.912 0.0094153 2736970000 192518 280497 291563 205849 297872 255725 286833 318343 247066 258677 FALSE FALSE TRUE 235342.9649 313298.6842 399424.2866 217094.0096 268214.8178 269114.3656 225548.7863 240268.8801 296649.88 194193.5845 1.211898763 1.613331794 2.056835645 1.117925755 1.381172393 1.385804615 1.161463634 1.237264767 1.527598766 1 17.56713601 -5.297775554 24.99962468 1.274974796 1.625953612 0.336395236 0.236478909 670.3317991 461193.0152 0.066359327 0.098429864 5.04E-06 5.297775554 0.350978815 RSHRMRR ddPTM_HeLa_A486_30min_R1 3 RSHRMRR 7 3 K7EKF8;O14594 K7EKF8 NCAN Neurocan core protein 0 0 ;; ;; 70.912 0.0096805 1247850000 234641 250666 228144 63743.6 308274 224567 245746 260071 225310 237093 FALSE FALSE TRUE 218193.8776 230802.3133 316487.4667 148398.3222 269607.4004 196862.2068 184257.7516 200858.5106 244840.0522 177723.3696 1.227716299 1.298660462 1.780787003 0.83499611 1.517005901 1.107688917 1.036767151 1.130175008 1.377646917 1 17.43927387 -5.266115254 24.99877859 1.15851989 1.422015166 0.259299715 0.22499373 581.9814718 3111469.824 0.061385326 0.09448428 5.42E-06 5.266115254 0.263495277 RSHS(ph)PSIDGTPK ddPTM_HeLa_A485_30min_R1 3 RSHSPSIDGTPK 12 1 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 RS(0.157)HS(0.619)PS(0.224)IDGTPK;RS(0.084)HS(0.901)PS(0.015)IDGTPK;RS(0.353)HS(0.63)PS(0.017)IDGTPK ;; 147.12 9.96E-08 1331130000 1258940 1363830 1030300 1481760 1655230 1505900 2122710 2157920 1265540 2107300 TRUE FALSE FALSE 1538986.86 1523318.055 1411450.844 1562704.797 1490429.489 1584746.595 1669175.668 1628686.737 1519522.27 1581988.892 0.972817741 0.962913243 0.892200224 0.987810221 0.942123865 1.001743188 1.055112129 1.02951844 0.960513868 1 20.59330804 -6.349017403 4.667805284 1.015395692 0.950941789 0.439286894 0.032546936 0.207563174 7.877569796 0.011851117 0.010424618 4.48E-07 6.349017403 -0.064453903 RSHS(ph)PSIDGTPK ddPTM_HeLa_A486_30min_R1 1 RSHSPSIDGTPK 12 1 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 RS(0.253)HS(0.739)PS(0.008)IDGTPK 159.34 4.71E-09 425100000 622330 559100 365870 163080 583320 559480 747860 673000 459130 709830 TRUE FALSE FALSE 578707.8807 514794.8798 507544.6623 379658.4816 510154.5664 490457.046 560737.5179 519772.5915 498927.7581 532083.9478 1.087625145 0.967506879 0.953880801 0.71353117 0.958785862 0.921766289 1.053851597 0.976862004 0.937686168 1 19.02129435 -6.705164283 24.99564752 0.990172454 0.927408651 0.087844212 0.09045525 220.4910829 97934.1711 0.036506678 0.028277932 1.97E-07 6.705164283 -0.062763803 RSLAALDALNT(ph)DDENDEEEYEAWK ddPTM_HeLa_A486_30min_R1 1 RSLAALDALNTDDENDEEEYEAWK 24 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 RS(0.039)LAALDALNT(0.96)DDENDEEEY(0.001)EAWK 56.914 0.00075236 0 17051 20324 15771 6799.3 20679 18121 18325 19786 15405 19901 TRUE FALSE FALSE 15855.81295 18713.45222 21877.95356 15829.11402 18085.247 15885.41526 13739.89118 15281.15973 16740.3178 14917.66007 1.062888743 1.254449568 1.466580782 1.061098989 1.212338055 1.064873123 0.921048684 1.024367069 1.122181209 1 13.86473364 -6.111001794 1.591868347 1.016658209 1.239952956 0.385696769 0.116150304 0.396942376 2.019262299 0.049102805 0.050027928 7.74E-07 6.111001794 0.223294747 RSLS(ph)PILPGR ddPTM_HeLa_A486_30min_R1 1 RSLSPILPGR 10 1 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 RS(0.162)LS(0.838)PILPGR 47.189 0.0331 83723000 62651 63218 70039 38423 115710 86184 106110 115710 60893 96482 TRUE FALSE FALSE 58259.48843 58208.37544 97159.97651 89450.68579 101196.5728 75551.49433 79560.15568 89365.35893 66171.25427 72322.27921 0.805553822 0.804847083 1.343430787 1.236834441 1.399244796 1.044650351 1.100078103 1.235654627 0.914949791 1 16.14215252 -4.744001501 24.95159593 1.172892523 0.805200072 0.490996797 0.143708342 188.9216872 270320.8063 0.036693574 0.096587722 1.80E-05 4.744001501 -0.367692451 RSLS(ph)PQEDALTGSR ddPTM_HeLa_A485_30min_R1 1 RSLSPQEDALTGSR 14 1 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 RS(0.346)LS(0.654)PQEDALTGSR 92.671 0.00042695 0 58954 111390 89275 50123 120630 102810 124540 160820 90938 80218 TRUE FALSE FALSE 72068.11391 124416.0915 122301.5375 52861.09257 108619.6536 108192.9726 97931.0116 121378.6428 109188.4225 60221.1289 1.196724725 2.065987367 2.030874209 0.877783156 1.803680131 1.796594893 1.626190232 2.015549111 1.813124803 1 15.87798213 RSLSGSS(ph)PCPK ddPTM_HeLa_A485_30min_R1 1 RSLSGSSPCPK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.22)LS(0.22)GS(0.22)S(0.341)PCPK 61.212 0.016173 207770000 113030 143820 104370 163960 201610 160100 235170 218720 132240 227960 TRUE FALSE FALSE 138173.1336 160638.4979 142980.8062 172916.7196 181537.0005 168482.5884 184924.0083 165078.5771 158779.355 171133.7673 0.807398421 0.93867213 0.83549149 1.010418472 1.060790067 0.984508149 1.080581648 0.96461721 0.927808448 1 17.38476493 -5.26910761 24.65061219 1.007361217 0.868335824 0.617157311 0.05166883 317.1141206 1019408.081 0.014492029 0.021973924 5.38E-06 5.26910761 -0.139025393 RSLSGSS(ph)PCPK ddPTM_HeLa_A486_30min_R1 1 RSLSGSSPCPK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.123)LS(0.123)GS(0.123)S(0.631)PCPK 49.31 0.030039 158910000 224540 209430 138040 98190 240890 263180 304000 284910 168870 266420 TRUE FALSE FALSE 208800.9055 192834.0041 191492.7848 228591.2822 210675.33 230711.5274 227935.9846 220042.2125 183507.7876 199706.6979 1.04553782 0.965586062 0.958870117 1.144635031 1.054923707 1.155251826 1.14135373 1.101826903 0.918886495 1 17.60752319 -5.249142964 24.86926384 1.083499553 0.987556802 0.212807934 0.072195976 988.1074858 1998425.3 0.01970179 0.033795273 5.63E-06 5.249142964 -0.095942751 RSNS(ph)PDKFK ddPTM_HeLa_A485_30min_R1 5 RSNSPDKFK 9 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 RS(0.163)NS(0.837)PDKFK;RS(0.003)NS(0.997)PDKFK;RS(0.041)NS(0.959)PDKFK;RS(0.455)NS(0.545)PDKFK;RS(0.001)NS(0.999)PDKFK ;;;; 157.56 1.25E-05 14168760000 13904300 7907050 5336650 24083800 10669700 10569110 18946960 14049100 9583090 30987300 TRUE FALSE FALSE 16997263.57 8831710.715 7310898.912 25399437.01 9607387.204 11122492.26 14898787.21 10603536.2 11506328.26 23262736.39 0.73066484 0.379650552 0.314275105 1.091850786 0.412994716 0.478124846 0.640457209 0.455816376 0.494624883 1 24.47151747 -10.04171154 4.716048513 1.000012497 0.552016104 0.28111027 0.213242668 66102361.34 70374683.64 7621.97903 0.050755786 9.08E-11 10.04171154 -0.447996394 RSNS(ph)PDKFK ddPTM_HeLa_A486_30min_R1 6 RSNSPDKFK 9 2 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 RS(0.028)NS(0.972)PDKFK;RSNS(1)PDKFK;RS(0.001)NS(0.999)PDKFK;RS(0.005)NS(0.995)PDKFK;RS(0.085)NS(0.915)PDKFK;RSNS(1)PDKFK ;;;;; 149.23 3.44E-05 22816920000 17861830 14330580 6119530 11050770 11072040 22251760 26558270 20512470 13290590 31704400 TRUE FALSE FALSE 16609807.96 13194972.65 8489175.903 25726751.03 9683281.501 19506564.09 19913109.94 15842228.37 14442629.04 23765411.88 0.6989068 0.555217503 0.357207186 1.082529146 0.407452711 0.820796382 0.837903001 0.666608618 0.607716336 1 24.50236007 -14 0.135734094 2.060978304 0.551449636 0.195786999 0.201227529 234.8297874 1.975245836 68.26294372 1.327543205 1.00E-14 14 -1.509528668 RSNS(ph)SGNLHMAGLTASPTPPSSSIITY ddPTM_HeLa_A486_30min_R1 1 RSNSSGNLHMAGLTASPTPPSSSIITY 27 1 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;Q9UKI8-3 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 RS(0.146)NS(0.608)S(0.246)GNLHMAGLTASPTPPSSSIITY 230.79 4.81E-39 549680000 390200 345200 342910 27747 432220 350180 365780 410150 319060 256920 TRUE FALSE FALSE 362848.995 317845.0948 475693.9354 64596.41826 378006.9373 306978.352 274257.9752 316767.7985 346716.3777 192585.5597 1.884092429 1.650409798 2.470039478 0.335416728 1.962800003 1.593984265 1.424083797 1.64481594 1.800323857 1 17.55514001 -11.08920351 2.25787543 0.000132688 1.628807329 0.122767981 0.512885724 12769087.64 3757571.892 65608886.36 0.12383524 8.14E-12 11.08920351 1.628674641 RSNS(ph)TTQVSQPR ddPTM_HeLa_A485_30min_R1 4 RSNSTTQVSQPR 12 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 RS(0.152)NS(0.83)T(0.018)TQVSQPR;RS(0.003)NS(0.961)T(0.036)TQVSQPR;RS(0.002)NS(0.974)T(0.024)TQVSQPR;RS(0.028)NS(0.588)T(0.192)T(0.192)QVS(0.001)QPR ;;; 163.9 1.52E-10 862733000 248064 361951 366806 218117 412787 344399 374607 461074 321947 279222 TRUE FALSE FALSE 303244.981 404278.0209 502502.8035 230032.1794 371688.4769 362431.1991 294569.1542 347994.8786 386558.8098 209617.0941 1.446661506 1.928650059 2.39724153 1.097392273 1.773178273 1.729015473 1.405272578 1.660145515 1.844118732 1 17.67739685 -11.51093475 0.27832072 4.79E-13 1.765295327 0.278758976 0.331054654 62.70568271 2.075521518 39.2936472 0.408095144 3.08E-12 11.51093475 1.765295327 RSNS(ph)TTQVSQPR ddPTM_HeLa_A486_30min_R1 2 RSNSTTQVSQPR 12 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 RS(0.312)NS(0.676)T(0.012)TQVSQPR;RS(0.017)NS(0.861)T(0.122)T(0.001)QVSQPR ; 160.04 1.92E-10 370310000 155884 156233 133755 51361 192872 148376 174472 180067 134180 162337 TRUE FALSE FALSE 144957.3366 143852.5281 185548.5181 119571.0036 168680.1953 130070.8777 130817.2602 139069.6749 145810.8304 121686.7586 1.191233445 1.182154326 1.524804509 0.982613105 1.386183651 1.06889919 1.075032828 1.142849695 1.198247304 1 16.89281266 -6.291446954 24.95092112 1.104560585 1.249474425 0.235834984 0.140340605 1099.100203 913884.416 0.047527831 0.041921372 5.11E-07 6.291446954 0.14491384 RSNT(ph)LDIMDGR ddPTM_HeLa_A485_30min_R1 1 RSNTLDIMDGR 11 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 RSNT(1)LDIMDGR 170.77 2.84E-08 1048700000 455710 568530 547650 424330 601680 534270 629130 699110 529340 592060 TRUE FALSE FALSE 557081.1173 635014.6379 750248.5246 447510.0734 541774.6266 562243.5511 494711.236 527652.1763 635573.6826 444470.3381 1.253359492 1.428699698 1.687960839 1.006839006 1.218921895 1.264974292 1.113035435 1.187148233 1.429957476 1 18.76172762 -5.268742978 24.99924172 1.185279541 1.453875982 0.415280242 0.153094442 561.3741062 1921508.033 0.042615133 0.064662514 5.39E-06 5.268742978 0.26859644 RSNT(ph)LDIMDGR ddPTM_HeLa_A486_30min_R1 2 RSNTLDIMDGR 11 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 RS(0.218)NT(0.782)LDIMDGR;RS(0.058)NT(0.942)LDIMDGR ; 122.12 8.78E-05 500070000 329670 351390 301130 111347 412740 295390 343160 347320 306750 333880 TRUE FALSE FALSE 306561.8354 323544.5767 417735.6005 259221.4432 360970.3006 258947.7851 257297.7384 268242.8179 333339.337 250274.2748 1.224903501 1.292760021 1.669111222 1.035749453 1.442298857 1.03465602 1.028063067 1.071795406 1.331896126 1 17.93315048 -6.268872053 24.98071463 1.093693139 1.332893882 0.323473014 0.173311944 714.1364918 2400157.918 0.059548847 0.053556919 5.38E-07 6.268872053 0.239200743 RSNVSSPATPTASSSSS(ph)TTPTRK ddPTM_HeLa_A485_30min_R1 1 RSNVSSPATPTASSSSSTTPTRK 23 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTAS(0.017)S(0.014)S(0.009)S(0.009)S(0.316)T(0.316)T(0.316)PT(0.002)RK 77.984 0.0023974 153180000 26604 33486 28107 35290 41603 39423 51549 55021 30118 45015 TRUE FALSE FALSE 32521.96802 37401.89641 38504.94893 37217.80334 37460.85924 41487.12732 40535.13503 41527.01348 36162.40634 33793.58894 0.962370942 1.106774912 1.139415793 1.101327338 1.108519705 1.227662661 1.199491865 1.228842949 1.070096651 1 15.04446195 -3.29277671 1.009164606 1.150892215 2.82E-14 0.339909271 0.069044067 11.82185218 2.21532925 0.021576442 23.32608529 0.000509593 3.29277671 -1.150892215 RSNVSSPATPTASSSSST(ph)TPTRK ddPTM_HeLa_A485_30min_R1 2 RSNVSSPATPTASSSSSTTPTRK 23 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTASS(0.002)S(0.01)S(0.01)S(0.067)T(0.442)T(0.442)PT(0.027)RK;RSNVSSPATPTASSSS(0.008)S(0.02)T(0.47)T(0.47)PT(0.031)RK ; 156.47 4.66E-10 802380000 126889 150263 123507 137044 203200 176825 260460 251050 139421 214749 TRUE FALSE FALSE 155115.0203 167834.9507 169197.3789 144530.3667 182968.6945 186083.2836 204810.5932 189479.5939 167401.5159 161216.0265 0.96215633 1.041056242 1.04950719 0.896501234 1.134928695 1.154248046 1.270410875 1.175314874 1.038367708 1 17.29863564 -5.865602537 8.486816466 1.147044108 0.995861518 0.412321345 0.080915198 0.240724851 17.7410819 0.025252673 0.02867983 1.36E-06 5.865602537 -0.15118259 RSNVSSPATPTASSSSST(ph)TPTRK ddPTM_HeLa_A486_30min_R1 1 RSNVSSPATPTASSSSSTTPTRK 23 2 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTASS(0.001)S(0.003)S(0.036)S(0.121)T(0.408)T(0.408)PT(0.023)RK 135.1 1.43E-06 304880000 136760 110920 69909 55560 138770 124580 157580 149180 100560 174650 TRUE FALSE FALSE 127173.8302 102130.2952 96979.63703 129346.4878 121364.1726 109210.5862 118151.8173 115214.9706 109276.6218 130916.5032 0.971411756 0.780117806 0.740774728 0.988007506 0.927034939 0.8342003 0.902497503 0.880064528 0.834704709 1 16.99828745 -11.53162349 2.099861167 2.68070281 0.871445253 0.205427447 0.074740455 5510188.074 288780.8693 44274311.13 0.021123796 2.94E-12 11.53162349 -1.809257557 RSNVSSPATPTASSSSSTT(ph)PTR ddPTM_HeLa_A485_30min_R1 1 RSNVSSPATPTASSSSSTTPTR 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTASSS(0.001)S(0.001)S(0.028)T(0.052)T(0.918)PT(0.001)R 200.85 7.37E-27 314540000 40228 58710 52893 37801 69644 69556 82194 83208 49204 53347 TRUE FALSE FALSE 49176.57982 65575.62379 72460.32176 39865.97291 62709.99883 73197.84461 64632.58044 62801.10753 59078.79147 40048.57468 1.227923346 1.637402188 1.809310877 0.995440493 1.565848456 1.827726584 1.613854699 1.568123411 1.475178379 1 15.28946328 -8.218603201 3.961637259 1.000008256 1.539052229 0.306317367 0.237818487 3.025722925 53.59807935 0.232535539 0.061068358 6.05E-09 8.218603201 0.539043973 RSNVSSPATPTASSSSSTT(ph)PTR ddPTM_HeLa_A486_30min_R1 3 RSNVSSPATPTASSSSSTTPTR 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTASS(0.004)S(0.016)S(0.002)S(0.007)T(0.032)T(0.939)PT(0.001)R;RSNVSSPATPTASSSSST(0.009)T(0.985)PT(0.005)R;RSNVSSPATPTAS(0.003)S(0.014)S(0.073)S(0.016)S(0.04)T(0.189)T(0.656)PT(0.009)R ;; 184.75 1.32E-19 691950000 137358 143347 109338 44626.4 168035 123876 145040 151451 113524 148577 TRUE FALSE FALSE 127729.9135 131987.6617 151676.6018 103892.5145 146958.4834 108593.4386 108749.4579 116968.9135 123364.3517 111372.3521 1.14687273 1.185102578 1.361887388 0.932839367 1.319523927 0.975048444 0.976449324 1.050250904 1.107674835 1 16.76503161 -6.282578168 24.98585352 1.022185664 1.184361529 0.354375911 0.11285197 951.3201647 1124448.162 0.038560279 0.034038272 5.22E-07 6.282578168 0.162175865 RSPES(ph)CSKPEK ddPTM_HeLa_A485_30min_R1 1 RSPESCSKPEK 11 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 RS(0.221)PES(0.74)CS(0.039)KPEK 79.885 0.0051257 207920000 235590 193060 149890 278680 255060 246160 315530 295760 193140 371430 TRUE FALSE FALSE 287996.1827 215636.6876 205340.5484 293903.5827 229665.3308 259048.557 248114.4379 223224.3963 231901.4264 278839.3367 1.032839147 0.773336683 0.736411695 1.054024824 0.82364753 0.929024434 0.889811462 0.800548441 0.831666827 1 18.08907458 -4.238075438 23.86522502 0.867152631 1.032839496 0.206057951 0.095075689 5678.646552 5800322.485 0.023287602 1.208331955 5.78E-05 4.238075438 0.165686865 RSPES(ph)CSKPEK ddPTM_HeLa_A486_30min_R1 1 RSPESCSKPEK 11 2 Q03111 Q03111 MLLT1 Protein ENL 1 0 RS(0.131)PES(0.738)CS(0.131)KPEK 58.32 0.023562 167590000 244010 188280 139470 101970 229370 294650 305860 265930 202650 289980 TRUE FALSE FALSE 226906.1591 173360.0071 193476.5191 237391.3133 200600.2758 258299.0788 229330.5929 205383.5442 220215.8652 217367.1205 1.043884459 0.797544756 0.890091007 1.092121535 0.922863933 1.188307956 1.055038096 0.944869416 1.013105683 1 17.72977421 -5.246891341 24.41230108 1.031666635 0.899210521 0.271085489 0.089892291 725.8655239 1218033.903 0.024119836 0.041528957 5.66E-06 5.246891341 -0.132456114 RSPQQTVPYVVPLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 RSPQQTVPYVVPLSPK 16 1 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 RSPQQTVPYVVPLS(1)PK 108.96 0.00012531 563470000 406650 397780 287790 593310 524110 415720 628910 568730 326680 808070 TRUE FALSE FALSE 497107.8896 444296.9108 394255.4969 625721.023 471927.7681 437486.4564 494538.2408 429248.0758 392241.6795 606633.0204 0.819454057 0.732398165 0.649907743 1.031465486 0.77794606 0.721171518 0.815218137 0.707591017 0.646588079 1 19.2104645 -5.991669966 24.998607 0.760757356 0.805712064 0.004140694 0.125870849 955.1588028 2866426.868 0.03892998 0.044071121 1.02E-06 5.991669966 0.044954708 RSPQQTVPYVVPLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 RSPQQTVPYVVPLSPK 16 1 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 RSPQQTVPYVVPLS(1)PK;RSPQQTVPYVVPLS(1)PK ; 103.84 0.00017937 876880000 474595 423846 233974 291913 411008 454929 623090 573610 341886 767340 TRUE FALSE FALSE 441328.3413 390258.8993 324574.9988 679588.2165 359455.5441 398804.4854 467186.2916 443011.5248 371520.9538 575193.0695 0.767269922 0.678483313 0.564288786 1.181495836 0.624930242 0.693340213 0.812225175 0.770196215 0.64590652 1 19.13368677 -10.87447827 2.355128692 1.125911506 0.751157893 0.179210528 0.161275492 21586348.18 11616803.17 15167324.75 0.041962083 1.34E-11 10.87447827 -0.374753613 RSPS(ph)APVCK ddPTM_HeLa_A485_30min_R1 3 RSPSAPVCK 9 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 RS(0.123)PS(0.877)APVCK;RS(0.024)PS(0.976)APVCK;RS(0.021)PS(0.979)APVCK ;; 88.101 0.0022754 640160000 726700 823690 779120 729110 956780 902060 1156440 1169490 775430 1060040 TRUE FALSE FALSE 888351.9079 920013.3803 1067348.91 768939.4331 861519.6237 949290.4668 909357.1468 882670.7438 931051.6883 795791.5366 1.116312334 1.156098473 1.341241846 0.966257365 1.082594604 1.192888367 1.142707738 1.109173324 1.169969327 1 19.60203103 -10.60594994 2.501829127 0.985356902 1.141843881 0.185819842 0.089118123 15904021.58 13458264.85 1521391.776 0.023239441 2.48E-11 10.60594994 0.156486979 RSPS(ph)APVCK ddPTM_HeLa_A486_30min_R1 3 RSPSAPVCK 9 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 RS(0.288)PS(0.712)APVCK;RS(0.005)PS(0.995)APVCK;RS(0.005)PS(0.995)APVCK ;; 113.99 0.00044048 701870000 1126310 1251500 863840 441287 1372520 1184460 1396940 1397150 1109840 1457560 TRUE FALSE FALSE 1047361.485 1152326.582 1198341.982 1027338.437 1200365.743 1038333.368 1047410.837 1079049.445 1206041.825 1092577.489 0.958615289 1.054686367 1.096802739 0.940288856 1.09865502 0.950352152 0.958660459 0.987618229 1.10385015 1 20.05930417 -5.25504952 24.99359231 1.004731686 1.038499946 0.049983487 0.061835806 1714.436379 6705915.574 0.01678271 0.028199918 5.56E-06 5.25504952 0.03376826 RSPS(ph)PKPT(ph)K ddPTM_HeLa_A486_30min_R1 1 RSPSPKPTK 9 2 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 RS(0.327)PS(0.701)PKPT(0.972)K 65.563 0.016761 201470000 198670 91362 133280 209620 99559 655820 269870 227860 309150 442450 TRUE FALSE FALSE 184744.2589 84122.14239 184889.5854 488005.9536 87071.38187 574911.5963 202345.6716 175981.2521 335947.3709 331657.6401 0.557033026 0.253641503 0.557471208 1.47141478 0.262533925 1.733448975 0.610104056 0.530611181 1.012934214 1 18.33933523 -5.015871151 24.08451133 0.924181778 0.405391872 0.232280821 0.412958409 598.733114 908584.8705 0.106398825 0.191898147 9.64E-06 5.015871151 -0.518789906 RSPS(ph)PLGTSVR ddPTM_HeLa_A485_30min_R1 3 RSPSPLGTSVR 11 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 RS(0.03)PS(0.936)PLGT(0.014)S(0.02)VR;RS(0.112)PS(0.888)PLGTSVR;RS(0.001)PS(0.989)PLGT(0.009)S(0.001)VR ;; 108.38 0.0016728 1067990000 292225 405451 367059 331752 397375 396544 455997 488699 322826 413135 TRUE FALSE FALSE 357229.4431 452864.9675 502849.3987 349874.7717 357810.9497 417306.4307 358569.5158 368844.804 387614.2171 310148.0477 1.151802972 1.460157402 1.621320535 1.128089551 1.153677904 1.345507198 1.156123724 1.189253993 1.249771585 1 18.24259752 -7.751025694 0.17473808 0.886535285 1.47747197 0.289904771 0.145895649 5.332049014 0.858576194 1.306688908 1.052388943 1.77E-08 7.751025694 0.590936685 RSPS(ph)PLGTSVR ddPTM_HeLa_A486_30min_R1 2 RSPSPLGTSVR 11 1 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 RS(0.292)PS(0.707)PLGTSVR;RS(0.049)PS(0.951)PLGTSVR ; 105.46 0.0004954 1148900000 248881 238064 266780 104422 324860 241336 265152 266162 183518 241278 TRUE FALSE FALSE 231435.7271 219198.9416 370084.3606 243099.6932 284113.0296 211562.418 198808.1651 205562.7229 199425.488 180860.4183 1.279637243 1.211978517 2.046242976 1.344128779 1.570896674 1.169755218 1.099235349 1.136582149 1.102648605 1 17.46451718 -6.355038769 4.440005409 1.101082978 1.497655507 0.446563402 0.217292838 0.231219083 7.900725135 0.080331582 0.070544874 4.42E-07 6.355038769 0.396572529 RSPS(ph)PSPTPEAK ddPTM_HeLa_A485_30min_R1 1 RSPSPSPTPEAK 12 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 RS(0.204)PS(0.779)PS(0.017)PTPEAK 76.358 0.0049471 177120000 143810 173110 152560 168650 205620 197930 225450 263070 159660 245870 TRUE FALSE FALSE 175800.0384 193353.7086 208998.2926 177862.9225 185147.7508 208293.3087 177280.7657 198551.67 191702.2975 184579.1339 0.952437226 1.047538281 1.13229642 0.963613377 1.003080613 1.128477008 0.960459408 1.075699435 1.038591381 1 17.49387994 RSPS(ph)PSPTPEAK ddPTM_HeLa_A486_30min_R1 1 RSPSPSPTPEAK 12 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 RS(0.029)PS(0.96)PS(0.011)PTPEAK 63.31 0.012216 0 162750 165560 141130 75104 203130 142910 190150 197280 155370 211430 TRUE FALSE FALSE 151342.0654 152440.4226 195779.3156 174845.9075 177651.5413 125279.2172 142572.4588 152363.6506 168837.5967 158486.5518 0.954920551 0.961850838 1.235305541 1.103222359 1.12092502 0.790472225 0.899587108 0.96136643 1.065311818 1 17.2740009 -6.227404243 24.95261256 0.93819782 1.079391771 0.302586474 0.099869362 799.1456241 585888.185 0.035138633 0.035136761 5.92E-07 6.227404243 0.141193951 RSPS(ph)PYYS(ph)R ddPTM_HeLa_A486_30min_R1 1 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 RS(0.147)PS(0.949)PY(0.18)Y(0.06)S(0.664)R 103.23 0.00065981 6646800000 266640 306390 255080 100260 343030 288520 308570 321890 263790 304160 TRUE FALSE FALSE 247949.9129 282110.5405 353853.8073 233410.3469 300003.9788 252925.3359 231362.5223 248602.6738 286655.5296 227996.3563 1.087516998 1.237346707 1.552015186 1.023745952 1.315827953 1.109339377 1.014764122 1.09038003 1.257281188 1 17.79865124 -6.34736903 6.858013016 1.093767156 1.247677067 0.205027225 0.146656567 0.434015546 29.57015898 0.051930365 0.045721862 4.49E-07 6.34736903 0.153909911 RSPS(ph)PYYSR ddPTM_HeLa_A485_30min_R1 1 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 0 RS(0.209)PS(0.788)PY(0.002)YSR 79.639 0.0049615 248670000 35786 55692 56685 39052 50523 50752 55164 64382 38726 47667 TRUE FALSE FALSE 43746.47224 62204.69494 77655.14036 41185.31188 45492.75272 53409.29624 43377.76075 48592.21355 46497.95298 35784.49415 1.222497992 1.738314218 2.170077913 1.1509262 1.271297913 1.492526233 1.212194326 1.357912546 1.299388299 1 15.12704697 -5.295878538 24.99929689 1.278611121 1.71309883 0.417942582 0.245158618 597.0440455 433391.4724 0.069155076 0.10257899 5.06E-06 5.295878538 0.434487708 RSPS(ph)PYYSR ddPTM_HeLa_A486_30min_R1 2 RSPSPYYSR 9 1 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 0 RS(0.138)PS(0.86)PY(0.001)YSR;RS(0.411)PS(0.589)PYYSR ; 65.329 0.012271 470280000 52525 60755 58988 20527.9 71620 50358 62749 53599 53429 61008 TRUE FALSE FALSE 48843.26874 55940.55253 81829.73335 47789.98862 62636.75177 44145.34196 47048.53651 41395.67776 58060.26874 45731.1997 1.068051332 1.223246993 1.789363364 1.045019351 1.369672175 0.965322192 1.028806085 0.905195534 1.269598635 1 15.48089115 -6.261372914 24.99994034 1.027548055 1.307982747 0.281474039 0.211570566 8.019984363 3016816.982 0.072059293 0.067741574 5.48E-07 6.261372914 0.280434692 RSPSKPLPEVTDEYK(ac)NDVK ddPTM_HeLa_A486_30min_R1 1 RSPSKPLPEVTDEYKNDVK 19 3 P05455;E9PGX9;E9PFL9;E7ERC4 P05455 SSB Lupus La protein 0 1 RSPSKPLPEVTDEYK(1)NDVK 106.16 0.00011211 23266000 22028 43139 35692 17920 65973 47568 56999 57390 40844 40266 FALSE TRUE FALSE 20483.95095 39720.50853 49512.89826 41718.66563 57698.05117 41699.5438 42737.24733 44323.54981 44384.39081 30183.13151 0.678655591 1.315983682 1.640416212 1.382184801 1.911599237 1.381551274 1.415931522 1.46848745 1.470503178 1 14.88145487 -4.292662041 3.202524161 1.484975172 0.589443991 0.53261951 0.216869932 0.214712882 3.573971188 0.052149431 0.459926062 5.10E-05 4.292662041 -0.895531181 RSPT(ph)SS(ph)PTPQR ddPTM_HeLa_A486_30min_R1 2 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 RS(0.027)PT(0.642)S(0.393)S(0.47)PT(0.47)PQR;RS(0.099)PT(0.644)S(0.537)S(0.635)PT(0.084)PQR ; 159.69 7.53E-06 4343100000 1145250 1373780 1143680 476000 1600910 1280300 1437770 1500250 1202640 1343310 TRUE FALSE FALSE 1064973.889 1264916.67 1586543.525 1108152.056 1400108.94 1122349.603 1078024.739 1158675.825 1306885.804 1006936.433 1.057637657 1.256203102 1.575614382 1.100518384 1.39046408 1.11461813 1.070598604 1.150694113 1.297883125 1 19.94154118 -6.286702196 24.20267442 1.132667139 1.281869381 0.193246161 0.152087439 909.8195695 871635.5528 0.053425039 0.047139242 5.17E-07 6.286702196 0.149202242 RSPTS(ph)S(ph)PTPQR ddPTM_HeLa_A485_30min_R1 1 RSPTSSPTPQR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 RS(0.343)PT(0.526)S(0.585)S(0.538)PT(0.007)PQR 65.395 0.009057 109210000 80553 94600 95420 83810 117560 90554 105220 108070 87020 123660 TRUE FALSE FALSE 98471.73695 105662.6471 130719.8288 88388.32808 105855.3136 95295.26742 82738.88743 81565.66305 104484.1158 92833.83779 1.060731079 1.138191091 1.408105405 0.952113262 1.140266482 1.026514358 0.891257858 0.878619962 1.125496029 1 16.50236314 -5.946668331 1.320056051 0.968802418 1.176387516 0.289187002 0.12382694 0.52127629 1.892154478 0.052585538 0.062438819 1.13E-06 5.946668331 0.207585098 RSPTSSAIPLQS(ph)PR ddPTM_HeLa_A485_30min_R1 2 RSPTSSAIPLQSPR 14 1 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 RSPTSSAIPLQS(1)PR;RSPTSSAIPLQS(1)PR ; 64.249 0.011455 180980000 191109 309700 272690 220610 312970 256110 270050 345540 212750 293580 TRUE FALSE FALSE 233620.5377 345916.721 373569.3786 232661.3657 281809.6079 269519.5236 212351.6114 260795.7732 255446.9735 220395.9089 1.060003967 1.569524238 1.694992345 1.055651926 1.278651719 1.222888051 0.963500695 1.183305872 1.15903682 1 17.74973792 -5.280836462 24.92254725 1.134893806 1.454308617 0.403789737 0.176597471 751.6217824 965727.523 0.049933617 0.074191068 5.24E-06 5.280836462 0.319414811 RSPTSSAIPLQS(ph)PR ddPTM_HeLa_A486_30min_R1 1 RSPTSSAIPLQSPR 14 1 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 RSPTSSAIPLQS(1)PR 76.526 0.0040386 170560000 135160 126660 94956 49701 140460 120930 123370 129360 109710 161860 TRUE FALSE FALSE 125685.982 116623.0003 131725.5062 115706.4397 122842.1971 106010.8861 92501.52113 99907.55191 119219.7511 121329.2025 1.035908746 0.961211299 1.085686739 0.953656971 1.01247016 0.873745842 0.762401131 0.823441924 0.98261382 1 16.88856731 -6.266993409 9.821684436 0.869469759 1.008218249 0.38712162 0.07443959 0.157660229 227.0591728 0.025383687 0.023475132 5.41E-07 6.266993409 0.13874849 RSQEMVTGGILGPGNHLLDSPSLTPGEY(ph)GDSPVPTPR ddPTM_HeLa_A485_30min_R1 1 RSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPR 37 1 H0YJG4;Q9HCK8-2;Q9HCK8;H0YJA4 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 RSQEMVTGGILGPGNHLLDSPSLT(0.02)PGEY(0.509)GDS(0.457)PVPT(0.014)PR 75.068 0.00039293 168670000 8553.4 12985 8954.5 8638 16098 11250 11501 17363 11761 13220 TRUE FALSE FALSE 10456.07432 14503.4828 12267.14218 9109.872067 14495.2266 11839.0326 9043.717395 13104.69703 14121.32482 9924.497296 1.053562111 1.46138211 1.236046705 0.917917734 1.460550209 1.192910054 0.911251938 1.320439377 1.422875578 1 13.27677831 -6.512707107 24.85370466 1.170593033 1.232859162 0.019247153 0.204419139 2739.322099 6693377.877 0.076227152 0.062826878 3.07E-07 6.512707107 0.062266129 RSQS(ph)IEQESQEK ddPTM_HeLa_A485_30min_R1 1 RSQSIEQESQEK 12 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RS(0.113)QS(0.887)IEQESQEK 100.24 0.00061955 249100000 201430 270270 224320 236430 279940 264330 325840 377040 258400 319740 TRUE FALSE FALSE 246237.4086 301875.7255 307305.3027 249345.5722 252068.1907 278169.9101 256221.6221 284570.3488 310258.5098 240034.7024 1.025840873 1.257633677 1.280253645 1.038789682 1.050132286 1.158873727 1.067435748 1.185538366 1.292556896 1 17.87288347 -5.264063497 24.92016771 1.118415014 1.194881822 0.098510999 0.101927703 534.3668691 5074682.245 0.028919146 0.045302329 5.44E-06 5.264063497 0.076466808 RSQS(ph)IEQESQEK ddPTM_HeLa_A486_30min_R1 1 RSQSIEQESQEK 12 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RS(0.381)QS(0.619)IEQESQEK 132.4 1.40E-05 298760000 284880 292050 195760 133280 317570 301130 357730 374400 240050 395640 TRUE FALSE FALSE 264911.3831 268906.8944 271563.5146 310282.5756 277737.4094 263979.6423 268222.1703 289157.2931 260857.7273 296569.1688 0.893253281 0.906725724 0.915683568 1.046240163 0.936501291 0.890111549 0.904416907 0.975007936 0.879584781 1 18.1780091 RSQS(ph)YIPTSGCR ddPTM_HeLa_A485_30min_R1 5 RSQSYIPTSGCR 12 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19;E5RHB5 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 RS(0.022)QS(0.977)YIPT(0.001)SGCR;RS(0.279)QS(0.707)YIPT(0.011)S(0.003)GCR;RSQS(1)YIPTSGCR;RSQS(1)YIPTSGCR;RS(0.105)QS(0.895)YIPTSGCR ;;;; 145.46 1.13E-07 2589200000 983867 1702940 1579670 1112929 2194630 1637660 2310160 2827720 1602280 1470490 TRUE FALSE FALSE 1202724.82 1902084.019 2164055.669 1173725.493 1976124.931 1723405.345 1816575.444 2134217.236 1923842.899 1103923.905 1.089499751 1.723020953 1.96033047 1.063230434 1.790091619 1.561163172 1.645562194 1.933301042 1.742731442 1 20.0742093 RSQS(ph)YIPTSGCR ddPTM_HeLa_A486_30min_R1 3 RSQSYIPTSGCR 12 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19;E5RHB5 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 RS(0.003)QS(0.997)YIPTSGCR;RS(0.001)QS(0.999)YIPTSGCR;RS(0.11)QS(0.89)YIPTSGCR ;; 132.23 1.42E-05 2080380000 884930 985370 1051440 363357 1408240 901740 1251340 1380970 742160 1036570 TRUE FALSE FALSE 822900.9768 907285.6925 1458585.727 845913.459 1231605.408 790492.487 938241.4967 1066553.277 806491.0264 777006.1251 1.059066268 1.167668649 1.877186909 1.088683128 1.58506525 1.017356828 1.207508495 1.37264462 1.037946807 1 19.56756645 -6.277503823 24.9008588 1.155407723 1.359252758 0.167940053 0.250236784 1660.234833 2573456.859 0.087432206 0.077353502 5.28E-07 6.277503823 0.203845036 RSS(ph)DGS(ph)LSHEEDLAK ddPTM_HeLa_A485_30min_R1 2 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 RS(0.237)S(0.781)DGS(0.978)LS(0.005)HEEDLAK;RS(0.535)S(0.734)DGS(0.73)LS(0.001)HEEDLAK ; 134.07 5.51E-06 1876480000 2170990 2322200 2073160 2583650 2828870 2601100 3342940 3416290 2182610 3430100 TRUE FALSE FALSE 2653919.236 2593761.09 2840108.155 2724788.257 2547217.77 2737289.574 2628693.56 2578439.521 2620639.807 2575039.196 1.030632559 1.007270527 1.102937835 1.05815409 0.989195727 1.063008896 1.020836329 1.001320494 1.017708705 1 21.29616296 -6.980414544 10.28430522 1.007911744 1.041472994 0.228652755 0.029567327 0.563938955 285.7763984 0.012935763 0.008638576 1.05E-07 6.980414544 0.03356125 RSS(ph)DGS(ph)LSHEEDLAK ddPTM_HeLa_A486_30min_R1 4 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 RS(0.452)S(0.549)DGS(0.999)LS(0.001)HEEDLAK;RS(0.421)S(0.579)DGS(0.987)LS(0.014)HEEDLAK;RS(0.126)S(0.907)DGS(0.966)LS(0.001)HEEDLAK;RS(0.212)S(0.793)DGS(0.973)LS(0.022)HEEDLAK ;;; 173.43 9.22E-13 1585670000 4106800 4416320 2590060 1912860 4546440 4769170 6133120 5972940 3647670 5952390 TRUE FALSE FALSE 3818934.528 4066354.719 3593000.596 4453234.751 3976183.101 4180798.295 4598548.506 4613031.95 3963852.973 4461872.8 0.855903944 0.911356038 0.805267375 0.99806403 0.891146673 0.937005263 1.030631914 1.03387796 0.888383231 1 22.08921795 -5.758257555 0.879907732 0.986858095 0.862803497 0.384360995 0.058120742 0.651645497 1.089713326 0.029398355 0.048348348 1.74E-06 5.758257555 -0.124054599 RSS(ph)DGSLSHEEDLAK ddPTM_HeLa_A485_30min_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RS(0.327)S(0.543)DGS(0.03)LS(0.1)HEEDLAK 141.31 1.71E-07 715910000 570550 663650 463550 617230 772490 648820 934480 942250 601080 934130 TRUE FALSE FALSE 697466.8791 741258.0945 635036.4349 650947.712 695578.1832 682791.2119 734820.714 711161.7101 721711.2426 701268.5824 0.99457882 1.057024531 0.905553808 0.928243085 0.991885564 0.973651507 1.047844909 1.014107473 1.029150971 1 19.41960757 -6.743438584 24.46984098 1.023951456 0.974341752 0.257327106 0.039597501 277.6627734 377447.7459 0.01620987 0.012528576 1.81E-07 6.743438584 -0.049609704 RSS(ph)DPALIGLSTSVSDSNFSSEEPSR ddPTM_HeLa_A485_30min_R1 2 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 RS(0.228)S(0.772)DPALIGLSTSVSDSNFSSEEPSR;RS(0.184)S(0.816)DPALIGLSTSVSDSNFSSEEPSR ; 305.62 5.08E-91 3541300000 331080 438900 454800 316870 535550 457630 478280 586160 408410 416120 TRUE FALSE FALSE 404727.6038 490225.5371 623049.4458 334179.8057 482228.7616 481590.7992 376091.5708 442403.3409 490374.1408 312388.9421 1.295588765 1.569279417 1.994467031 1.069755554 1.543680638 1.541638433 1.203920882 1.416193985 1.569755118 1 18.25298386 -12.30553695 0.220807989 1.87E-15 1.539187843 0.250130958 0.239677052 95.05935688 1.860135591 44.38454582 0.479737312 4.95E-13 12.30553695 1.539187843 RSS(ph)DPALIGLSTSVSDSNFSSEEPSR ddPTM_HeLa_A486_30min_R1 1 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 RS(0.201)S(0.799)DPALIGLSTSVSDSNFSSEEPSR 205.61 1.18E-28 2062000000 107910 107950 133780 44676 150970 124640 145330 151540 118180 123330 TRUE FALSE FALSE 100346.0662 99395.64885 185583.1988 104007.9858 132033.9349 109263.184 108966.8969 117037.6501 128423.9376 92447.36526 1.085439979 1.075159347 2.007447137 1.125050839 1.428206575 1.181896139 1.17869121 1.265992273 1.389157357 1 16.49634458 -6.271892658 23.82180821 1.218243396 1.353976055 0.062971181 0.267731021 1311.925368 2989713.002 0.094817839 0.08458221 5.35E-07 6.271892658 0.135732659 RSS(ph)DSWEVWGSASTNR ddPTM_HeLa_A485_30min_R1 1 RSSDSWEVWGSASTNR 16 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 RS(0.001)S(0.895)DS(0.104)WEVWGSASTNR 216.16 3.24E-33 362360000 170220 216660 209130 158310 245740 175290 216790 239540 184990 198430 TRUE FALSE FALSE 208084.8517 241996.5023 286495.8896 166958.0744 221273.2628 184467.9134 170471.0455 180792.4394 222115.7962 148965.0528 1.396870258 1.624518622 1.923242292 1.120786864 1.485403848 1.238330131 1.144369382 1.213656733 1.491059762 1 17.18461439 -5.274675174 24.99458323 1.256774174 1.645841229 0.499450135 0.185960632 636.3564558 1201699.392 0.051708826 0.077201669 5.31E-06 5.274675174 0.389067055 RSS(ph)DSWEVWGSASTNR ddPTM_HeLa_A486_30min_R1 1 RSSDSWEVWGSASTNR 16 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 RS(0.222)S(0.775)DS(0.004)WEVWGSASTNR 133.32 2.32E-07 0 59675 63177 59755 22587 74175 48701 66615 68711 49969 63300 TRUE FALSE FALSE 55492.09066 58170.62443 82893.73629 52583.67748 64871.27985 42692.76578 49947.22242 53067.00525 54300.35315 47449.26799 1.16950362 1.225954096 1.746997157 1.108208403 1.367171352 0.899756047 1.052644741 1.118394603 1.144387584 1 15.53409821 -6.246236205 24.77851838 1.051036765 1.329703547 0.395630464 0.173138827 788.049101 1284383.075 0.057835123 0.057619765 5.67E-07 6.246236205 0.278666782 RSS(ph)FLNAK ddPTM_HeLa_A485_30min_R1 4 RSSFLNAK 8 1 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8T6 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 RS(0.292)S(0.708)FLNAK;RS(0.155)S(0.845)FLNAK;RS(0.19)S(0.81)FLNAK;RS(0.198)S(0.802)FLNAK ;;; 98.898 0.0014255 763640000 958370 1091830 841280 1100490 1353690 1126970 1574250 1623390 1064750 1557010 TRUE FALSE FALSE 1171556.1 1219510.021 1152504.481 1160606.982 1218911.871 1185976.407 1237898.627 1225251.057 1278435.559 1168876.062 1.002292834 1.043318501 0.985993741 0.992925615 1.04280677 1.014629733 1.059050371 1.048230088 1.093730636 1 20.15669054 -6.495228765 1.457812615 1.054549526 1.010064197 0.275063981 0.027935875 0.492064882 2.117251041 0.013792289 0.010318759 3.20E-07 6.495228765 -0.044485329 RSS(ph)FLNAK ddPTM_HeLa_A486_30min_R1 4 RSSFLNAK 8 1 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8T6 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 RS(0.149)S(0.851)FLNAK;RS(0.147)S(0.853)FLNAK;RS(0.322)S(0.678)FLNAK;RS(0.367)S(0.633)FLNAK ;;; 133.05 0.00030242 620660000 1190530 1243900 831200 520050 1341920 1298170 1512610 1493350 990970 1387600 TRUE FALSE FALSE 1107079.995 1145328.834 1153062.9 1210702.682 1173603.881 1138014.984 1134138.979 1153346.805 1076868.077 1040135.928 1.064360883 1.101133806 1.108569437 1.163985061 1.128317799 1.094102178 1.090375737 1.108842386 1.035314759 1 19.98834065 -7.880985607 2.857468171 1.000161165 1.10946665 0.687688314 0.024695905 0.145034864 2.333649821 0.025630323 0.006975547 1.32E-08 7.880985607 0.109305485 RSS(ph)FSMEEGDVL ddPTM_HeLa_A485_30min_R1 1 RSSFSMEEGDVL 12 1 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 RS(0.038)S(0.931)FS(0.031)MEEGDVL 110.14 0.0011429 133330000 159620 200650 197690 161360 241970 193270 227690 246610 192620 235070 TRUE FALSE FALSE 195126.9183 224114.2721 270823.7576 170174.6882 217878.6172 203389.3183 179042.1714 186128.5108 231277.0672 176471.3751 1.105714273 1.269975212 1.534661116 0.964318933 1.234639992 1.152534331 1.014567781 1.054723525 1.310564203 1 17.42907466 -5.279000232 24.99362189 1.110438008 1.300102748 0.296275201 0.14028667 1039.76429 1479850.348 0.039333663 0.058492484 5.26E-06 5.279000232 0.189664741 RSS(ph)IGLR ddPTM_HeLa_A485_30min_R1 5 RSSIGLR 7 1 Q96GN5-5;Q96GN5-2;Q96GN5;Q96GN5-4;C9J8L0;C9IZR6 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 RS(0.014)S(0.986)IGLR;RS(0.063)S(0.937)IGLR;RS(0.008)S(0.992)IGLR;RS(0.094)S(0.906)IGLR;RS(0.008)S(0.992)IGLR ;;;; 104.42 0.0020838 1991960000 359751 575584 746035 372706 715931 522069 513718 588910 547906 446304 TRUE FALSE FALSE 439776.3688 642893.5419 1022024.392 393065.985 644650.3959 549403.7256 403957.9526 444478.8991 657865.7085 335048.6264 1.312574755 1.918806678 3.050376307 1.17316101 1.924050257 1.639773102 1.205669628 1.326610122 1.963493226 1 18.35401097 -6.003917644 1.27916205 1.41797666 1.99258697 0.161344836 0.523881073 0.821092667 2.793745118 0.231914681 0.262461234 9.91E-07 6.003917644 0.574610311 RSS(ph)IGLR ddPTM_HeLa_A486_30min_R1 5 RSSIGLR 7 1 Q96GN5-5;Q96GN5-2;Q96GN5;Q96GN5-4;C9J8L0;C9IZR6 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 RS(0.048)S(0.952)IGLR;RS(0.05)S(0.95)IGLR;RS(0.079)S(0.921)IGLR;RS(0.02)S(0.98)IGLR;RS(0.267)S(0.733)IGLR ;;;; 110.53 0.0017434 2307420000 417945 488182 685128 154328 745246 400354 515587 536662 504069 453589 TRUE FALSE FALSE 388649.2138 449496.6804 950427.91 359283.3833 651770.2975 350962.394 386581.6793 414475.7778 547762.1068 340007.362 1.143061172 1.322020434 2.795315679 1.056692953 1.916929956 1.032219985 1.13698032 1.21902001 1.611030136 1 18.37520646 -6.267698929 24.84353085 1.209609481 1.659782758 0.175364951 0.483969729 881.6786019 3499283.277 0.168250327 0.152045686 5.40E-07 6.267698929 0.450173277 RSS(ph)LLNAK ddPTM_HeLa_A485_30min_R1 5 RSSLLNAK 8 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;D6RE77;B7Z7Y1 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 RS(0.167)S(0.833)LLNAK;RS(0.185)S(0.815)LLNAK;RS(0.004)S(0.996)LLNAK;RS(0.009)S(0.991)LLNAK;RS(0.01)S(0.99)LLNAK ;;;; 160.16 2.51E-05 3330470000 4159890 4304430 3475220 4573360 5308910 4348600 6311740 6221900 3955680 6183200 TRUE FALSE FALSE 5085243.179 4807795.645 4760848.494 4823191.076 4780336.28 4576285.972 4963185.187 4695969.269 4749548.692 4641842.033 1.09552267 1.035751672 1.025637766 1.039068336 1.029836053 0.985877145 1.069227507 1.011660723 1.02320343 1 22.146266 RSS(ph)LLNAK ddPTM_HeLa_A486_30min_R1 6 RSSLLNAK 8 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;D6RE77;B7Z7Y1 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 RS(0.244)S(0.756)LLNAK;RS(0.002)S(0.998)LLNAK;RS(0.045)S(0.955)LLNAK;RS(0.392)S(0.608)LLNAK;RS(0.039)S(0.961)LLNAK;RS(0.012)S(0.988)LLNAK ;;;;; 143 0.00022223 3068400000 4515870 4502650 2944420 1746480 4647120 4468250 5398030 5178270 3598330 5217210 TRUE FALSE FALSE 4199330.833 4145843.616 4084578.278 4065893.702 4064234.877 3917002.745 4047385.799 3999290.962 3910236.142 3910786.658 1.07378162 1.060104776 1.044439044 1.039661341 1.039237175 1.001589472 1.034928815 1.022630819 0.999859231 1 21.89902741 -1.000000005 0.203986621 0.997358633 1.382770531 0.822611566 0.010211349 21.0309197 0.257005123 0.018263828 2.607424858 0.099999999 1.000000005 0.385411898 RSS(ph)LPLDHGSPAQENPES(ph)EKSSPAVSR ddPTM_HeLa_A485_30min_R1 1 RSSLPLDHGSPAQENPESEKSSPAVSR 27 2 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 2 0 RS(0.481)S(0.519)LPLDHGS(0.009)PAQENPES(0.391)EKS(0.31)S(0.287)PAVS(0.003)R 51.19 0.024284 494200000 125820 110380 67789 199240 145040 134580 258260 266540 109740 314080 TRUE FALSE FALSE 153808.2249 123287.9808 92866.97204 210123.9767 130599.3083 141626.4007 203080.6412 201170.6471 131763.8114 235785.6362 0.652322285 0.522881643 0.393861872 0.891165298 0.55389001 0.600657457 0.861293523 0.853192969 0.558828831 1 17.84711631 -13.99996988 0.059508712 2.317919649 0.098737838 0.368048908 0.149418816 430.0717566 1.866741242 82.3312209 13.89519386 1.00E-14 13.99996988 -2.219181811 RSS(ph)LPLDHGSPAQENPES(ph)EKSSPAVSR ddPTM_HeLa_A486_30min_R1 1 RSSLPLDHGSPAQENPESEKSSPAVSR 27 2 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 2 0 RS(0.48)S(0.516)LPLDHGS(0.009)PAQENPES(0.389)EKS(0.313)S(0.291)PAVS(0.002)R 46.128 0.033785 790890000 138950 120050 58776 25994 111060 132910 221830 183400 85377 184240 TRUE FALSE FALSE 129210.3225 110536.8008 81535.64128 60515.34566 97129.81921 116512.9155 166325.7877 141643.8236 92777.5471 138105.1048 0.935594109 0.800381716 0.590388323 0.438183264 0.703303613 0.843653938 1.204342069 1.025623374 0.671789412 1 17.07540712 -6.432779233 3.88682971 0.982494078 0.681259339 0.368337469 0.172445116 0.264063132 7.303064008 0.06890684 0.058873135 3.69E-07 6.432779233 -0.301234738 RSS(ph)LPNGEGLQLK ddPTM_HeLa_A485_30min_R1 1 RSSLPNGEGLQLK 13 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 RS(0.108)S(0.892)LPNGEGLQLK 131.67 1.09E-05 301780000 311060 300320 249600 340820 394890 308200 412550 388480 318950 472670 TRUE FALSE FALSE 380254.2239 335439.8116 341937.4267 359438.1336 355573.3651 324336.8754 324405.3223 293204.6709 382960.3394 354842.0678 1.071615398 0.945321432 0.963632719 1.012952426 1.002060909 0.914031635 0.914224529 0.826296252 1.079241652 1 18.43681753 -6.253801687 24.00482393 0.933868936 0.994925294 0.110951536 0.068960049 649.1084819 2040110.012 0.022279774 0.021838725 5.57E-07 6.253801687 0.061056358 RSS(ph)LPNGEGLQLK ddPTM_HeLa_A486_30min_R1 1 RSSLPNGEGLQLK 13 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 RS(0.095)S(0.905)LPNGEGLQLK 232.73 1.26E-28 326110000 383040 423200 300500 167420 425700 430010 524390 499530 353320 456450 TRUE FALSE FALSE 356190.874 389664.0907 416861.6477 389762.2209 372304.7365 376959.7382 393182.0756 385797.9237 383946.0621 342151.949 1.041031258 1.138862695 1.218352398 1.139149498 1.088126891 1.101731962 1.149144632 1.127563133 1.122150738 1 18.38427764 -8.467189227 2.749032867 1.000000516 1.128165965 0.428835687 0.04324782 9.433125273 54.09425956 0.04367026 0.011705447 3.41E-09 8.467189227 0.128165449 RSS(ph)LS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 RSSLSPGR 8 1 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 RS(0.233)S(0.802)LS(0.965)PGR 89.533 0.0019005 4502600000 1474800 1992400 1867400 1691700 2241900 1856800 2169100 2433500 1720600 2124000 TRUE FALSE FALSE 1802864.172 2225393.848 2558228.969 1784113.287 2018688.564 1954019.177 1705654.065 1836680.309 2065908.638 1594525.889 1.130658451 1.395646106 1.604382209 1.118898915 1.266011783 1.225454657 1.069693554 1.151866095 1.295625647 1 20.60469609 -5.303343834 24.98956569 1.170653225 1.378771008 0.347039784 0.135205953 540.7240964 322457.6603 0.038131815 0.056559281 4.97E-06 5.303343834 0.208117783 RSS(ph)LS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 RSSLSPGR 8 1 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 RS(0.171)S(0.841)LS(0.988)PGR;RS(0.034)S(0.966)LS(0.999)PGR ; 98.407 0.0011824 7613800000 3835200 4285800 3691600 1364700 4786700 3859900 4182600 4168400 3956400 4118600 TRUE FALSE FALSE 3566372.285 3946177.599 5121086.384 3177090.568 4186307.452 3383704.783 3136069.241 3219346.316 4299343.938 3087275.752 1.155184237 1.278207039 1.658771938 1.029091932 1.35598754 1.096016376 1.015804707 1.042778998 1.392601206 1 21.55790292 -5.948715221 1.470379996 1.110640036 1.326794073 0.180960887 0.185169236 0.675045159 3.009419262 0.07414716 0.08656293 1.13E-06 5.948715221 0.216154036 RSS(ph)LSSHSHQSQIYR ddPTM_HeLa_A485_30min_R1 2 RSSLSSHSHQSQIYR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 RS(0.178)S(0.819)LS(0.001)S(0.002)HSHQSQIYR;RS(0.208)S(0.78)LS(0.009)S(0.002)HSHQSQIYR ; 187.43 4.79E-18 319210000 36484 119995 147796 16112.6 165242 90049 92869 149652 90158 28924 TRUE FALSE FALSE 44599.73993 134027.3714 202471.8907 16992.79054 148789.9263 94763.8264 73026.77948 112949.6124 108251.8836 21713.77911 2.053983312 6.172457165 9.324580936 0.78258098 6.852327527 4.364225404 3.363153835 5.201748245 4.985400427 1 14.40632322 -9.955086926 0.529533856 8.53E-18 4.959241139 0.193525978 2.300406076 33.60018017 5.886000016 59.94867902 1.034485807 1.11E-10 9.955086926 4.959241139 RSS(ph)LSSHSHQSQIYR ddPTM_HeLa_A486_30min_R1 1 RSSLSSHSHQSQIYR 15 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 RS(0.216)S(0.783)LS(0.001)SHSHQSQIYR 198.05 2.64E-25 104960000 24440 30888 46674 2155.3 58477 14663 21484 24420 30504 7728.2 TRUE FALSE FALSE 22726.88221 28440.32239 64747.42277 5017.647323 51142.26938 12854.02814 16108.47597 18860.09908 33148.11128 5793.008418 3.923157118 4.909421899 11.1768218 0.866155711 8.828274654 2.218886495 2.780675394 3.255665748 5.722089265 1 12.50009705 -6.294021634 24.96487187 3.123018081 5.892439737 0.214950273 2.80831595 1090.294148 835391.5797 0.953182794 0.840688187 5.08E-07 6.294021634 2.769421656 RSS(ph)LYGIAK ddPTM_HeLa_A485_30min_R1 1 RSSLYGIAK 9 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 RS(0.231)S(0.769)LYGIAK 110.15 0.00054837 270480000 557780 502000 446410 568580 687190 546280 747200 851400 566810 818080 TRUE FALSE FALSE 681856.2367 560704.5332 611555.6357 599640.0857 618770.9507 574882.3761 587554.6159 642592.8151 680563.5679 614147.7116 1.110247948 0.912979927 0.995779393 0.976377628 1.007527894 0.936065323 0.956699186 1.046316388 1.108143131 1 19.22822616 -7.368189455 5.556474134 1.060709613 0.981539507 0.226966378 0.055545053 0.291858108 12.64143504 0.02963709 0.013825354 4.28E-08 7.368189455 -0.079170106 RSS(ph)LYGIAK ddPTM_HeLa_A486_30min_R1 2 RSSLYGIAK 9 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 RS(0.233)S(0.766)LYGIAK;RS(0.101)S(0.899)LYGIAK ; 109.02 0.00058002 611320000 1232410 1253830 715450 469810 1132570 1165760 1487270 1671870 910450 1273520 TRUE FALSE FALSE 1146024.423 1154471.944 992491.4004 1093741.423 990512.5098 1021940.384 1115139.315 1291221.698 989368.5391 954622.3028 1.200500365 1.209349437 1.039669194 1.145732108 1.037596238 1.070518027 1.168147143 1.352599551 1.036397889 1 19.86457052 -6.840111728 14.27668738 1.16871591 1.115568971 0 0.105154449 3.947478395 708.1906117 0.04352382 0.029343886 1.45E-07 6.840111728 -0.05314694 RSS(ph)PPGHYYQK ddPTM_HeLa_A485_30min_R1 1 RSSPPGHYYQK 11 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 RS(0.392)S(0.604)PPGHY(0.004)YQK 52.891 0.03654 809260000 250560 329630 286270 271890 323580 355500 405110 469460 295140 472870 TRUE FALSE FALSE 306296.2076 368177.3611 392173.1857 286742.6622 291363.239 374113.4303 318554.9391 354324.1989 354371.8908 354992.2115 0.862825148 1.037142081 1.104737436 0.80774353 0.820759525 1.05386377 0.897357544 0.998118233 0.998252579 1 18.43742785 -7.366472474 12.65758935 0.998778411 0.945293456 0.072311731 0.09443279 2.862985242 333.9189183 0.054206747 0.026026097 4.30E-08 7.366472474 -0.053484955 RSS(ph)PSARPPDVPGQQPQAAK ddPTM_HeLa_A486_30min_R1 2 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RS(0.041)S(0.932)PS(0.027)ARPPDVPGQQPQAAK;RS(0.033)S(0.946)PS(0.02)ARPPDVPGQQPQAAK ; 162.01 1.99E-13 1029840000 467700 444440 320770 166277 492820 467220 560780 524610 399860 555310 TRUE FALSE FALSE 434916.6452 409220.9558 444980.7345 387101.2592 431005.9202 409579.1467 420466.9127 405167.7552 434520.1868 416256.7615 1.044827821 0.983097438 1.069005421 0.929957889 1.035432839 0.983957943 1.010114313 0.973360177 1.043875384 1 18.66711418 -1.351342151 1.268232456 1.001574485 91.05495176 0.086401805 0.03783734 4858.704238 4.538727386 0.009451936 1275002.693 0.044530528 1.351342151 90.05337727 RSS(ph)PSARPPDVPGQQPQAAKS(ph)PS(ph)PVQGK ddPTM_HeLa_A485_30min_R1 1 RSSPSARPPDVPGQQPQAAKSPSPVQGK 28 3 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 3 0 RS(0.453)S(0.489)PS(0.063)ARPPDVPGQQPQAAKS(0.995)PS(0.999)PVQGK 47.761 0.032006 114720000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RSS(ph)QDSLNTR ddPTM_HeLa_A486_30min_R1 1 RSSQDSLNTR 10 1 F5H6W4;Q9H992-2;Q9H992 F5H6W4 7-Mar E3 ubiquitin-protein ligase MARCH7 1 0 RS(0.207)S(0.791)QDS(0.001)LNTR 89.992 0.0019108 201770000 46976 42518 39904 13651 57150 34185 38866 37769 50508 43553 TRUE FALSE FALSE 43683.22498 39148.71883 55355.89747 31780.21788 49981.7141 29967.60227 29141.31572 29169.82319 54886.07411 32647.04532 1.338045283 1.199150442 1.69558675 0.973448518 1.530972056 0.917926936 0.892617247 0.893490449 1.681195758 1 14.99466481 -6.268037268 24.96706041 1.058862432 1.337766382 0.187490288 0.279806646 893.0114527 3379233.078 0.095263793 0.085972181 5.39E-07 6.268037268 0.27890395 RSS(ph)RSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RS(0.44)S(0.556)RS(0.145)S(0.778)PELT(0.081)R 83.37 0.018322 9621200000 2805400 3648700 3867600 3290100 4447000 3329500 3931500 4250500 3384100 3856700 TRUE FALSE FALSE 3429451.551 4075383.726 5298386.184 3469829.832 4004241.066 3503827.472 3091502.908 3208058.21 4063257.829 2895295.667 1.184490962 1.407588099 1.829998312 1.198437131 1.383016288 1.210179503 1.067767601 1.108024388 1.403399962 1 21.46527925 -6.039172153 1.550093265 1.15396467 1.446609544 0.289390721 0.191909899 0.504734978 2.461830043 0.079101121 0.085325103 9.14E-07 6.039172153 0.292644874 RSS(ph)RSS(ph)PELTR ddPTM_HeLa_A486_30min_R1 1 RSSRSSPELTR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RS(0.361)S(0.447)RS(0.285)S(0.904)PELT(0.004)R 81.656 0.022356 7589900000 2461500 2767100 2664500 1005400 3409600 2659800 2941100 3217200 2573700 2730000 TRUE FALSE FALSE 2288961.561 2547824.918 3696265.758 2340622.01 2981936.175 2331660.919 2205205.672 2484713.791 2796790.388 2046390.231 1.118536204 1.245033758 1.806237003 1.143780876 1.457168887 1.139401901 1.077607603 1.214193536 1.366694556 1 20.96464985 -6.274510084 24.05863352 1.167843354 1.36151788 0.188145177 0.201433667 862.2866679 1587164.609 0.071229673 0.063248575 5.31E-07 6.274510084 0.193674526 RSS(ph)SEGLSK ddPTM_HeLa_A485_30min_R1 3 RSSSEGLSK 9 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RS(0.047)S(0.917)S(0.036)EGLSK;RS(0.045)S(0.91)S(0.045)EGLSK;RS(0.17)S(0.827)S(0.004)EGLSK ;; 127.71 0.00015898 895620000 994110 597480 270180 993690 366860 1244190 617810 986900 676780 1045610 TRUE FALSE FALSE 1215246.34 667350.0886 370130.8251 1047972.769 330334.1303 1309333.865 485809.8465 744861.2276 812603.5382 784958.67 1.54816602 0.850172263 0.471529062 1.335067448 0.420829966 1.66802905 0.618898631 0.948917766 1.035218247 1 19.58225717 -6.936254403 0.007205543 2.63E-07 1.934260314 0.001121316 0.405261232 54241.70725 281.4986604 37460.34913 38076.32132 1.16E-07 6.936254403 1.934260051 RSS(ph)SEGLSK ddPTM_HeLa_A486_30min_R1 1 RSSSEGLSK 9 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RS(0.156)S(0.825)S(0.018)EGLSK 85.554 0.0031216 0 107000 69778 160440 84621 67249 304460 111700 122140 191350 192210 TRUE FALSE FALSE 99499.85255 64248.53715 222566.6647 197001.9645 58814.00335 266898.8207 83751.47856 94331.3883 207936.3721 144079.3649 0.690590583 0.445924628 1.544750456 1.367315608 0.408205598 1.852443068 0.581287116 0.654718241 1.443207167 1 17.1365042 -4.7345962 24.9990822 1.08641986 0.568257178 0.191607565 0.440676516 371.55199 346021.2775 0.109691795 0.290043396 1.84E-05 4.7345962 -0.518162682 RSS(ph)YLLAITTER ddPTM_HeLa_A485_30min_R1 4 RSSYLLAITTER 12 1 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RS(0.178)S(0.822)YLLAITTER;RS(0.168)S(0.832)YLLAITTER;RS(0.193)S(0.807)YLLAITTER;RS(0.196)S(0.804)YLLAITTER ;;; 186.98 2.92E-13 492255000 436092 530484 487781 398781 616301 480832 557984 663132 493449 556677 TRUE FALSE FALSE 533099.1609 592519.4892 668231.4902 420565.3963 554939.9085 506007.62 438766.1601 500497.8372 592479.6881 417907.6688 1.275638618 1.41782392 1.598993127 1.006359604 1.327900754 1.210811999 1.049911722 1.197627789 1.417728681 1 18.67282471 -5.260275552 24.99997195 1.184053082 1.429519085 0.395491385 0.14566353 111.1089002 2386686.597 0.039749225 0.064200124 5.49E-06 5.260275552 0.245466003 RSS(ph)YLLAITTER ddPTM_HeLa_A486_30min_R1 2 RSSYLLAITTER 12 1 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RS(0.435)S(0.565)YLLAITTER;RS(0.17)S(0.83)YLLAITTER ; 202.35 2.50E-17 362090000 394190 433510 404490 170493 475280 399140 436950 456040 353800 403210 TRUE FALSE FALSE 366559.3166 399157.0888 561119.3606 396916.3202 415665.9506 349898.165 327620.4884 352209.6473 384467.6689 302243.5915 1.212794338 1.320646988 1.856513674 1.313233204 1.375268036 1.157669425 1.083961737 1.165317172 1.272045726 1 18.20535222 -6.123774429 2.141589547 1.13852721 1.448876823 0.399100544 0.172212762 0.346757175 3.134366424 0.067184142 0.067779736 7.52E-07 6.123774429 0.310349613 RSSAWAEGGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RSSAWAEGGSPR 12 1 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 RSSAWAEGGS(1)PR 67.646 0.0080511 216540000 147740 278840 267400 160170 290380 243170 276150 307450 222240 210100 TRUE FALSE FALSE 180604.2533 311447.9124 366322.3874 168919.6815 261468.7476 255902.0052 217148.2966 232047.4054 266841.5295 157725.9366 1.145051075 1.974614443 2.322524724 1.070969589 1.657740973 1.622447206 1.376744378 1.471206388 1.691805008 1 17.26706039 -11.78023259 0.191621408 4.36E-14 1.74321823 0.199867087 0.351420882 82.85005082 1.751638643 35.59333189 1.043549344 1.66E-12 11.78023259 1.74321823 RSSDS(ph)WEVWGSASTNR ddPTM_HeLa_A486_30min_R1 1 RSSDSWEVWGSASTNR 16 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 RSS(0.05)DS(0.95)WEVWGSASTNR 287.38 6.64E-59 303480000 258400 286800 247210 107400 311740 243130 286900 285790 209140 268920 TRUE FALSE FALSE 240287.4944 264072.9235 342936.3325 250032.6277 272638.6623 213135.0926 215114.5855 220721.8558 227268.4236 201580.6816 1.192016479 1.310011065 1.701236099 1.240360067 1.352503921 1.057319039 1.067138893 1.094955399 1.127431566 1 17.62099786 -6.241739941 6.172508393 1.074700711 1.370087192 0.550083678 0.130850525 0.139826855 21.48300779 0.045693048 0.044200317 5.73E-07 6.241739941 0.295386482 RSSIRS(ph)VDMEEMGT(ph)GRATDY(ph)VFR ddPTM_HeLa_A486_30min_R1 1 RSSIRSVDMEEMGTGRATDYVFR 23 3 O43147-5;O43147;O43147-2 O43147-5 SGSM2 Small G protein signaling modulator 2 3 0 RS(0.287)S(0.318)IRS(0.434)VDMEEMGT(0.936)GRAT(0.426)DY(0.599)VFR 40.414 0.023922 1401500000 132280 161600 231090 18630 253830 134940 102150 139570 170070 62877 TRUE FALSE FALSE 123007.8551 148794.2275 320574.2368 43371.58151 221992.2745 118292.4748 76590.98957 107792.9578 184811.8045 47132.18994 2.609848073 3.156955526 6.801598594 0.920211464 4.709992784 2.509802216 1.625025055 2.287034783 3.921137651 1 15.5244251 -6.460523598 11.12418619 2.28018393 3.635565509 0.161929973 1.568227554 1.728898847 305.3244533 0.540041985 0.475777976 3.46E-07 6.460523598 1.355381578 RSSLS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 RSSLSPGR 8 1 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 RSS(0.002)LS(0.998)PGR;RSSLS(1)PGR ; 86.114 0.0027162 618550000 112118 111401 112888 43613 140257 96812 127081 125344 115171 116486 TRUE FALSE FALSE 104259.1072 102573.179 156601.2568 101533.2681 122664.6592 84868.31975 95283.98967 96805.90744 125154.115 87317.1474 1.194027866 1.174719767 1.793476556 1.162810182 1.404817529 0.971954791 1.091240295 1.108670064 1.433328032 1 16.41397738 -6.24452985 24.61477172 1.125968111 1.351142356 0.228838621 0.206248136 1075.140341 1565055.286 0.068384146 0.068197617 5.69E-07 6.24452985 0.225174245 RSSSSSAAAS(ph)TPPPGPPAPADPLGYLPLHGGYQYK ddPTM_HeLa_A486_30min_R1 1 RSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYK 35 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 RS(0.017)S(0.017)S(0.017)S(0.021)S(0.021)AAAS(0.454)T(0.454)PPPGPPAPADPLGYLPLHGGYQYK 147.41 1.62E-09 290020000 184220 181210 135270 60135 203990 172220 221040 203280 166800 202790 TRUE FALSE FALSE 171307.1293 166850.2596 187650.1667 139997.3191 178403.6721 150973.2474 165733.4541 156997.5816 181258.3583 152010.0641 1.126945971 1.097626402 1.234458835 0.920974015 1.173630662 0.993179289 1.090279483 1.032810443 1.192410249 1 17.21380732 -5.235000509 24.9989749 1.062489639 1.147471974 0.211961875 0.083721566 1267.954705 1198899.176 0.021171872 0.036656967 5.82E-06 5.235000509 0.084982335 RSSSSSAAAST(ph)PPPGPPAPADPLGYLPLHGGYQYK ddPTM_HeLa_A485_30min_R1 1 RSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYK 35 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 RS(0.003)S(0.003)S(0.003)S(0.003)S(0.003)AAAS(0.161)T(0.825)PPPGPPAPADPLGYLPLHGGYQYK 71.18 0.0006591 246350000 62073 76489 57731 70001 85514 71369 130640 151380 84796 98477 TRUE FALSE FALSE 75880.9247 85433.72318 79088.09929 73824.97738 76999.9259 75105.77048 102727.6968 114253.8176 101813.7794 73928.49623 1.026409687 1.155626417 1.069791803 0.998599744 1.041545951 1.015924499 1.3895548 1.54546384 1.37719262 1 16.17384295 -6.763845329 24.99979022 1.373508197 1.054057172 0.486319664 0.136147953 46.03959268 478378.2103 0.052842767 0.037535602 1.72E-07 6.763845329 -0.319451024 RSSSSSAAAST(ph)PPPGPPAPADPLGYLPLHGGYQYK ddPTM_HeLa_A486_30min_R1 1 RSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYK 35 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 RS(0.003)S(0.003)S(0.003)S(0.005)S(0.005)AAAS(0.053)T(0.928)PPPGPPAPADPLGYLPLHGGYQYK 127.98 2.73E-06 208900000 133940 145650 140120 51267 161770 143490 156300 178800 125420 156800 TRUE FALSE FALSE 124551.4977 134108.1636 194378.2165 119352.1669 141479.2982 125787.6627 117192.0868 138091.1432 136291.5066 117536.2594 1.059685737 1.140993973 1.653772355 1.015449764 1.20370768 1.070203045 0.997071775 1.174881214 1.159569883 1 16.84274636 RSST(ph)SSEPTPTVK ddPTM_HeLa_A485_30min_R1 1 RSSTSSEPTPTVK 13 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 RS(0.185)S(0.185)T(0.532)S(0.079)S(0.02)EPTPTVK 149.09 5.91E-08 252220000 361410 400050 313650 430890 515520 423080 525120 567490 365730 480740 TRUE FALSE FALSE 441804.4077 446832.3675 429682.1871 454428.4296 464193.0187 445231.8146 412923.8222 428312.1877 439128.6563 360900.3654 1.224172791 1.238104503 1.190583963 1.259152035 1.286208226 1.233669614 1.144149083 1.186787903 1.216758692 1 18.46124108 -10.29607738 0.325972532 0.859121022 1.240450816 0.784575792 0.035263037 9.10071904 0.657842702 1.138626278 0.03607146 5.06E-11 10.29607738 0.381329794 RSST(ph)SSEPTPTVK ddPTM_HeLa_A486_30min_R1 1 RSSTSSEPTPTVK 13 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 RS(0.201)S(0.201)T(0.505)S(0.08)S(0.013)EPTPTVK 122.31 4.22E-05 477110000 513920 490170 364740 154890 477460 503170 574130 533320 414160 694870 TRUE FALSE FALSE 477896.8619 451327.144 505977.0961 360591.7477 417572.5147 441094.0013 430476.6015 411894.6783 450059.7223 520870.0292 0.917497332 0.866487067 0.971407583 0.69228738 0.801682745 0.846840817 0.826456846 0.790782067 0.864053789 1 18.9905639 -5.224441498 24.99795424 0.822169628 0.913266285 0.206700522 0.076069637 835.3375175 564402.3123 0.019583443 0.033918481 5.96E-06 5.224441498 0.091096657 RSSTS(ph)SEPTPTVK ddPTM_HeLa_A486_30min_R1 1 RSSTSSEPTPTVK 13 1 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 RS(0.103)S(0.103)T(0.194)S(0.479)S(0.121)EPTPTVK 114.29 0.00013388 370430000 460800 466940 277090 185560 490120 467790 499120 510660 407660 672280 TRUE FALSE FALSE 428500.2996 429937.9738 384386.6687 431993.0577 428644.5794 410078.8259 374234.8968 394393.8656 442996.297 503936.7122 0.850305781 0.853158667 0.762767743 0.857236727 0.850592086 0.813750648 0.742622809 0.782625786 0.879071293 1 18.94288304 -8.060130097 4.375738736 0.99991574 0.814385751 0.686297136 0.038494651 0.169980922 9.022103084 0.039828301 0.01042494 8.71E-09 8.060130097 -0.185529988 RSSVS(ph)TIQVEWPEPDLAPAIK ddPTM_HeLa_A486_30min_R1 1 RSSVSTIQVEWPEPDLAPAIK 21 1 Q96B33 Q96B33 CLDN23 Claudin-23 1 0 RS(0.159)S(0.159)VS(0.341)T(0.341)IQVEWPEPDLAPAIK 100.67 0.00022637 31795000 41173 38916 29350 9653.1 52721 53923 44967 38518 44939 66028 TRUE FALSE FALSE 38286.98532 35832.15443 40715.10602 22472.90464 46108.24058 47270.52851 33715.78099 29748.29224 48834.3487 49494.15903 0.773565731 0.723967335 0.822624464 0.454051651 0.931589535 0.95507287 0.681207271 0.601046524 0.986668925 1 15.59497066 RST(ph)SPIIGS(ph)PPVR ddPTM_HeLa_A485_30min_R1 1 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 2 0 RS(0.386)T(0.456)S(0.158)PIIGS(1)PPVR 62.002 0.019587 316540000 147860 218870 199250 131770 210510 184860 210290 246930 159600 172080 TRUE FALSE FALSE 180750.9469 244464.9426 272960.8665 138968.2614 189550.8853 194538.9838 165359.8236 186370.0303 191630.2561 129183.6229 1.399178494 1.892383393 2.11296804 1.075742097 1.467298106 1.505910574 1.28003705 1.442675365 1.483394348 1 16.97906366 -4.74136372 0.053333111 1.26E-13 3.294187892 0.311855311 0.263805198 220.8145156 2.184252361 47.59521005 91.44912314 1.81E-05 4.74136372 3.294187892 RST(ph)SPIIGSPPVR ddPTM_HeLa_A486_30min_R1 1 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 RS(0.286)T(0.612)S(0.102)PIIGSPPVR 101.53 0.00059157 1017800000 472390 531350 513270 221150 763220 465180 632160 686760 551120 675290 TRUE FALSE FALSE 439277.9004 489243.8909 712021.8898 514848.3763 667489.8309 407790.8212 473986.8817 530399.7399 598891.5253 506192.9886 0.867807161 0.96651653 1.406621399 1.017098988 1.318646931 0.805603456 0.936375834 1.04782119 1.183128844 1 18.949328 -6.264964122 24.99206458 0.993936576 1.117794992 0.109299279 0.172278156 773.4729054 5484264.927 0.061316978 0.056174242 5.43E-07 6.264964122 0.123858416 RST(ph)VLGLPQHVQK ddPTM_HeLa_A485_30min_R1 1 RSTVLGLPQHVQK 13 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 RS(0.189)T(0.811)VLGLPQHVQK 141.6 9.79E-08 149110000 188250 178250 148980 167900 238640 229830 311050 343750 187410 273330 TRUE FALSE FALSE 230125.563 199094.7869 204093.9016 177071.9519 214880.1637 241863.5434 244591.6265 259444.7735 225021.468 205193.8613 1.121503156 0.970276526 0.994639412 0.862949558 1.047205615 1.178707501 1.19200265 1.264388573 1.096628654 1 17.64662805 -6.117607007 4.184032632 1.165005654 0.983584576 0.413732863 0.087864638 0.201673188 5.930052262 0.029195442 0.029468867 7.63E-07 6.117607007 -0.181421078 RST(ph)VLGLPQHVQK ddPTM_HeLa_A486_30min_R1 1 RSTVLGLPQHVQK 13 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 RS(0.229)T(0.771)VLGLPQHVQK 164.53 6.57E-12 633040000 409030 460240 364400 184540 510620 523050 643660 664700 398400 441540 TRUE FALSE FALSE 380359.1092 423768.9062 505505.439 429618.4461 446573.2783 458521.409 482609.4601 513362.3203 432933.6328 330975.5101 1.149206203 1.28036333 1.527319767 1.298036964 1.349263812 1.385363554 1.458142507 1.551058325 1.308053374 1 18.33636495 -4.52356766 24.98600355 1.382708782 1.181995427 0.1455478 0.147089652 29.2302717 1060208.648 0.035025559 0.094574385 3.00E-05 4.52356766 -0.200713354 RSTAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_HeLa_A485_30min_R1 1 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 RSTAPSAAASASASAAAS(0.558)S(0.442)PAGGGAEALELLEHCGVCR 102.34 4.54E-05 494730000 87085 138220 123140 88883 174800 115160 168110 199980 123140 117890 TRUE FALSE FALSE 106456.7578 154383.6266 168694.6103 93738.45323 157396.2982 121189.5995 132191.9252 150934.5914 147853.0685 88502.1926 1.202871417 1.744404541 1.906106564 1.059165321 1.778445184 1.36934008 1.493657064 1.705433357 1.670614751 1 16.43342558 -10.22964221 4.067083155 0.999670614 1.554313733 0.292253119 0.255552114 56098179.67 155.0692488 214305.0766 0.059457306 5.89E-11 10.22964221 0.554643119 RSTAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_HeLa_A485_30min_R1 3 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 RSTAPSAAASASASAAAS(0.001)S(0.999)PAGGGAEALELLEHCGVCR;RSTAPSAAASASASAAAS(0.022)S(0.978)PAGGGAEALELLEHCGVCR;RSTAPSAAASASASAAAS(0.103)S(0.897)PAGGGAEALELLEHCGVCR ;; 220.38 9.92E-40 4875480000 310957 567910 586407 318144 730469 572284 715974 844412 494685 429331 TRUE FALSE FALSE 380128.3119 634322.1343 803343.3517 335523.4011 657740.9415 602247.9053 563000.3059 637318.633 593963.742 322306.683 1.17939941 1.968070065 2.492481212 1.041006653 2.040730076 1.868555439 1.746784462 1.977367106 1.842852703 1 18.29807458 -10.60917064 6.694195765 0.998035519 1.811962835 0.265200062 0.396242703 0.011200864 0.000653943 0.369903957 0.089580679 2.46E-11 10.60917064 0.813927316 RSTAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_HeLa_A486_30min_R1 4 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 RSTAPSAAASASASAAAS(0.001)S(0.999)PAGGGAEALELLEHCGVCR;RSTAPSAAASASASAAAS(0.001)S(0.999)PAGGGAEALELLEHCGVCR;RSTAPSAAASASASAAAS(0.115)S(0.885)PAGGGAEALELLEHCGVCR;RSTAPSAAASASASAAAS(0.058)S(0.942)PAGGGAEALELLEHCGVCR ;;; 206.11 8.45E-30 4781000000 611810 656758 668100 233610 1112310 618331 846540 917100 526789 703250 TRUE FALSE FALSE 568925.2784 604714.1042 926806.2123 543855.886 972793.7079 542047.6079 634726.7382 708296.3502 572451.4947 527151.6226 1.0792441 1.147135052 1.758139732 1.031687778 1.845377433 1.028257497 1.204068642 1.343629271 1.085933288 1 19.00785845 RSTS(ph)PIIGS(ph)PPVR ddPTM_HeLa_A485_30min_R1 4 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 2 0 RS(0.296)T(0.332)S(0.372)PIIGS(1)PPVR;RS(0.241)T(0.285)S(0.474)PIIGS(1)PPVR;RS(0.132)T(0.15)S(0.719)PIIGS(1)PPVR;RS(0.266)T(0.328)S(0.406)PIIGS(1)PPVR ;;; 81.723 0.0005867 1648470000 709090 1006590 955640 650990 1137150 881710 1049220 1197630 801640 911920 TRUE FALSE FALSE 866824.6242 1124301.944 1309171.003 686551.9353 1023931.353 927874.9722 825045.5757 903909.3647 962521.7949 684595.1266 1.266185794 1.642287391 1.912328839 1.002858344 1.495674324 1.355363099 1.205158412 1.320356119 1.405972315 1 19.3848915 -11.42375347 0.073594873 4.11E-07 1.969240499 0.251691437 0.228345027 215.8274382 1.980484219 49.26995366 13.06360361 3.77E-12 11.42375347 1.969240088 RSTS(ph)PIIGS(ph)PPVR ddPTM_HeLa_A486_30min_R1 6 RSTSPIIGSPPVR 13 1 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 2 0 RS(0.293)T(0.331)S(0.376)PIIGS(1)PPVR;RS(0.298)T(0.332)S(0.37)PIIGS(1)PPVR;RS(0.287)T(0.331)S(0.382)PIIGS(1)PPVR;RS(0.285)T(0.331)S(0.384)PIIGS(1)PPVR;RS(0.278)T(0.33)S(0.392)PIIGS(1)PPVR;RS(0.281)T(0.33)S(0.39)PIIGS(1)PPVR ;;;;; 66.12 0.0064575 3550440000 1180690 1246250 1133715 414721 1492050 1068990 1235734 1287430 980591 1239513 TRUE FALSE FALSE 1097929.728 1147492.611 1572719.81 965491.4468 1304903.176 937108.8825 926540.2829 994310.2934 1065589.417 929130.8769 1.181673923 1.235017197 1.692678447 1.039133959 1.404434196 1.008586525 0.997211809 1.070150953 1.146866867 1 19.8255223 -6.268775745 24.55176179 1.045988188 1.312535711 0.398064909 0.163551087 477.3762931 1597574.281 0.056410103 0.050759144 5.39E-07 6.268775745 0.266547523 RSVSDNDIR ddPTM_HeLa_A486_30min_R1 1 RSVSDNDIR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 71.349 0.034043 58647000 89860 101400 133470 36071 155620 93946 101550 111700 91817 99284 FALSE FALSE TRUE 83561.27804 93364.69471 185153.1585 83975.11093 136100.6885 82355.89769 76141.11591 86268.34839 99775.77149 74422.64017 1.122793788 1.254520056 2.487860657 1.128354365 1.828753833 1.106597367 1.023090766 1.159168073 1.340664229 1 16.18345395 -6.282067848 24.30320755 1.129426189 1.574310174 0.245201901 0.384501115 860.5896244 1013890.629 0.135413664 0.119573127 5.22E-07 6.282067848 0.444883985 RSVVS(ph)FDK ddPTM_HeLa_A485_30min_R1 2 RSVVSFDK 8 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 RS(0.001)VVS(0.999)FDK;RSVVS(1)FDK ; 98.407 0.0014751 295880000 232210 201417 159648 303900 241490 231280 319930 274610 217960 406590 TRUE FALSE FALSE 283864.3134 224970.9661 218708.4387 320501.2875 217446.4077 243389.4632 251574.3419 207261.4669 261702.5728 305234.5957 0.929987352 0.737042816 0.716525721 1.050016256 0.712391094 0.797384918 0.824199961 0.679023511 0.857381753 1 18.21955896 RSVVS(ph)FDK ddPTM_HeLa_A486_30min_R1 2 RSVVSFDK 8 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 RS(0.009)VVS(0.991)FDK;RS(0.002)VVS(0.998)FDK ; 75.89 0.0072245 389220000 347300 298599 153131 119192 239007 375890 423550 377580 253902 573470 TRUE FALSE FALSE 322956.0635 274936.9278 212427.4242 277484.9996 209028.5134 329516.5136 317573.3101 291613.2765 275910.4298 429869.3793 0.751288831 0.639582489 0.494167378 0.645510039 0.486260533 0.766550328 0.738766996 0.67837648 0.641847136 1 18.71353882 -6.288619435 24.80873355 0.74336041 0.601649302 0.323874729 0.114704939 928.1039107 847128.367 0.039390664 0.034747571 5.14E-07 6.288619435 -0.141711108 RSVVS(ph)FDKVK ddPTM_HeLa_A485_30min_R1 1 RSVVSFDKVK 10 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 RSVVS(1)FDKVK 105.14 0.00043841 275090000 103880 83963 56849 164970 149660 125010 204650 175850 108330 265550 TRUE FALSE FALSE 126987.7476 93781.74247 77879.81078 173981.8934 134759.3249 131555.3303 160924.8557 132722.5118 130070.8373 199353.2721 0.636998562 0.470429913 0.390662315 0.872731566 0.675982508 0.659910564 0.807234584 0.665765404 0.65246402 1 17.60496776 -14 0.052243696 2.342831257 6.23E-13 0.463449097 0.12398378 482.5399049 1.855411196 89.03457767 18.59904094 1.00E-14 14 -2.342831257 RSYS(ph)PDGK ddPTM_HeLa_A485_30min_R1 6 RSYSPDGK 8 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 RS(0.017)Y(0.001)S(0.982)PDGK;RS(0.001)YS(0.999)PDGK;RS(0.249)YS(0.751)PDGK;RS(0.007)YS(0.992)PDGK;RS(0.177)Y(0.008)S(0.815)PDGK;RS(0.057)Y(0.003)S(0.94)PDGK ;;;;; 100.09 0.0016303 3705920000 1873260 1831130 1495910 2437990 1955330 1775440 2440970 1944000 1809230 3137150 TRUE FALSE FALSE 2289960.224 2045264.725 2049309.359 2571171.22 1760650.48 1868399.293 1919436.819 1467230.952 2172325.866 2355116.24 0.972334268 0.868434725 0.870152107 1.091738563 0.747585384 0.793336338 0.815007254 0.622997255 0.922385838 1 21.16736684 -5.793525429 24.99999609 0.796763827 0.939040695 0.243526848 0.111444959 249.9739471 194767.0636 0.03315828 0.037600926 1.61E-06 5.793525429 0.142276868 RSYS(ph)PDGK ddPTM_HeLa_A486_30min_R1 2 RSYSPDGK 8 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 RS(0.013)YS(0.987)PDGK;RS(0.002)YS(0.998)PDGK ; 100.31 0.0012826 2645400000 1290370 1121210 799390 531730 939580 1337710 1497930 1276830 1101060 1623800 TRUE FALSE FALSE 1199921.726 1032361.236 1108935.216 1237894.312 821729.1152 1172676.941 1123132.071 986123.682 1196500.767 1217189.911 0.985813073 0.848151325 0.911061788 1.017010001 0.675103456 0.963429725 0.922725419 0.810164193 0.983002535 1 20.21512285 -9.778119649 5.940463283 1.000000006 0.896971484 0.08247986 0.097018684 6.92E-09 1.45E-09 0.089048153 0.021597348 1.67E-10 9.778119649 -0.103028522 RSYS(ph)PDGKES(ph)PSDKK ddPTM_HeLa_A485_30min_R1 1 RSYSPDGKESPSDKK 15 3 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 RS(0.414)Y(0.009)S(0.577)PDGKES(0.585)PS(0.415)DKK 85.231 0.0010654 1034500000 221080 119480 70015 484790 196240 210740 452600 407700 140390 690640 TRUE FALSE FALSE 270258.4833 133452.1467 95916.46207 511272.8501 176701.6566 221774.0205 355898.3126 307710.9358 168564.9853 518476.1583 0.521255373 0.257393025 0.184996862 0.986106771 0.340809609 0.427741984 0.686431395 0.593491004 0.325116175 1 18.98391812 -14 0.209190644 3.405287882 0.411673374 0.319509097 0.224254436 180.773467 1.801269296 182.9995735 0.490262454 1.00E-14 14 -2.993614508 RSYS(ph)PDGKES(ph)PSDKK ddPTM_HeLa_A486_30min_R1 1 RSYSPDGKESPSDKK 15 3 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 RS(0.41)Y(0.006)S(0.585)PDGKES(0.59)PS(0.41)DKK 94.057 0.00056291 1369400000 691070 501680 147010 751890 409860 810560 1336800 1025500 362850 1689600 TRUE FALSE FALSE 642629.5617 461925.0497 203936.2091 1750437.918 358451.537 710561.3484 1002318.501 792016.0365 394302.1302 1266513.163 0.507400618 0.364721871 0.161021784 1.382092165 0.283022354 0.561037476 0.791399987 0.625351603 0.311328885 1 20.27243064 -11.58439816 2.148486637 8.877476552 0.562669932 0.142498048 0.327511286 8257852.017 390601.2531 318847625.1 0.08522324 2.60E-12 11.58439816 -8.31480662 RSYS(ph)PR ddPTM_HeLa_A485_30min_R1 1 RSYSPR 6 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3;P11274-2;P11274 O75494-2;O75494-6;P11274-2 SRSF10;BCR Serine/arginine-rich splicing factor 10;Breakpoint cluster region protein 1 0 RSYS(1)PR 117.72 0.018884 892610000 678790 1057300 694980 691400 683280 802220 862990 1155600 823100 895450 TRUE FALSE FALSE 829784.4937 1180942.038 952082.0225 729169.4313 615250.2441 844222.9987 678605.1365 872187.2881 988288.6201 672230.7945 1.234374415 1.756750877 1.416302303 1.084701024 0.915236626 1.255852909 1.009482371 1.297452148 1.47016267 1 19.35859711 -5.136356481 4.738981124 1.150060025 1.51426743 0.36769628 0.193937594 0.228272493 7.792453926 0.053336391 0.095787824 7.31E-06 5.136356481 0.364207405 RSYS(ph)PR ddPTM_HeLa_A486_30min_R1 1 RSYSPR 6 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3;P11274-2;P11274 O75494-2;O75494-6;P11274-2 SRSF10;BCR Serine/arginine-rich splicing factor 10;Breakpoint cluster region protein 1 0 RS(0.002)YS(0.998)PR 101.25 0.03123 383720000 1163700 744700 1061100 409240 826290 1341000 894340 812440 1143200 1202100 TRUE FALSE FALSE 1082130.639 685687.2598 1471986.337 952731.4018 722649.0034 1175561.054 670566.6726 627465.1474 1242293.496 901086.3356 1.200917822 0.760956229 1.633568593 1.057314226 0.801975321 1.30460424 0.744175831 0.696342984 1.378662008 1 19.78130582 -5.515677478 24.95331314 0.971895156 1.186513899 0.096482001 0.285441243 767.390661 2659111.498 0.081751672 0.110051474 3.05E-06 5.515677478 0.214618743 RSYS(ph)SPDITQAIQEEEK ddPTM_HeLa_A485_30min_R1 1 RSYSSPDITQAIQEEEK 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RS(0.134)YS(0.611)S(0.255)PDITQAIQEEEK 221.04 2.23E-34 258010000 113560 134460 98644 169720 137750 143840 211830 233680 113750 214050 TRUE FALSE FALSE 138821.0302 150183.9274 135136.5205 178991.3738 124035.1263 151371.24 166570.79 176369.6136 136578.5816 160691.2743 0.863898994 0.93461159 0.840969873 1.113883592 0.771884639 0.942000371 1.036588892 1.097568081 0.849943982 1 17.29393207 -6.561340874 7.992119766 1.00247021 0.909054377 0.151583863 0.100788663 0.439405135 78.69374525 0.037209634 0.028888918 2.75E-07 6.561340874 -0.093415833 RSYS(ph)SPDITQAIQEEEKR ddPTM_HeLa_A485_30min_R1 1 RSYSSPDITQAIQEEEKR 18 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RS(0.006)YS(0.967)S(0.027)PDITQAIQEEEKR 189.57 2.09E-18 339590000 115830 123840 109090 125590 135700 129240 194620 197050 114890 174300 TRUE FALSE FALSE 141595.9839 138322.0107 149446.9306 132450.6637 122189.2315 136006.8066 153037.8471 148723.1785 137947.3692 130850.2178 1.082122646 1.057101877 1.142122139 1.012231129 0.933809921 1.039408332 1.169565093 1.13659099 1.054238744 1 16.9975568 RSYS(ph)SPDITQAIQEEEKR ddPTM_HeLa_A486_30min_R1 3 RSYSSPDITQAIQEEEKR 18 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RS(0.285)YS(0.695)S(0.02)PDITQAIQEEEKR;RSYS(0.91)S(0.09)PDITQAIQEEEKR;RS(0.016)YS(0.492)S(0.492)PDITQAIQEEEKR ;; 275.2 2.09E-69 1701540000 872350 844110 492622 388503 933150 850730 1151340 1087810 709570 1177620 TRUE FALSE FALSE 811202.7698 777219.6494 683378.4313 904454.6179 816105.6257 745775.5822 863262.5544 840139.4097 771076.0989 882736.287 0.918963887 0.88046641 0.774159215 1.024603419 0.924518044 0.844845276 0.977939354 0.951744504 0.873506743 1 19.75162298 -13.99999998 0.070256499 1.30507792 0.799056172 0.156572261 0.066406641 585.806379 2.95589662 29.11523156 3.593098037 1.00E-14 13.99999998 -0.506021748 RSYSS(ph)PDITQAIQEEEKR ddPTM_HeLa_A485_30min_R1 2 RSYSSPDITQAIQEEEKR 18 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RSYS(0.476)S(0.524)PDITQAIQEEEKR;RSYS(0.036)S(0.964)PDITQAIQEEEKR ; 331.8 6.92E-102 1221920000 515430 564140 436990 640720 756870 675380 924690 965430 588180 940640 TRUE FALSE FALSE 630085.6253 630111.2656 598650.7857 675720.9112 681513.3653 710741.8525 727122.4275 728656.7788 706222.3309 706155.7592 0.892275701 0.892312011 0.847760254 0.956900659 0.965103458 1.00649445 1.02969128 1.031864103 1.000094273 1 19.42962691 -5.69122636 1.492042658 1.016478571 0.878287479 0.886852141 0.020499997 0.118325392 0.54635389 0.007512808 0.011012472 2.04E-06 5.69122636 -0.138191092 RT(ph)ASNPKVENEDEPVR ddPTM_HeLa_A485_30min_R1 1 RTASNPKVENEDEPVR 16 2 Q9UBF8-2 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 RT(0.5)AS(0.5)NPKVENEDEPVR 58.997 0.0033711 0 54964 59088 54192 62410 88224 76710 106810 108500 57076 75819 TRUE FALSE FALSE 67190.55218 65997.8276 74239.87592 65819.30027 79440.10879 80726.41698 83989.17094 81890.20488 68530.62967 56918.71865 1.180464947 1.159510073 1.3043139 1.156373542 1.395676338 1.418275374 1.475598414 1.438721862 1.204008651 1 15.79661556 -5.763530387 24.99880364 1.356471887 1.204700804 0.129373446 0.138390026 85.04193593 1016711.893 0.04065099 0.048400728 1.72E-06 5.763530387 -0.151771083 RT(ph)ASPPPPPK ddPTM_HeLa_A485_30min_R1 3 RTASPPPPPK 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RT(0.5)AS(0.5)PPPPPK;RT(0.5)AS(0.5)PPPPPK;RT(0.5)AS(0.5)PPPPPK ;; 73.466 0.010207 1453530000 983030 1217440 957820 1192380 1378900 1262390 1599380 1740480 1080970 1557960 TRUE FALSE FALSE 1201701.632 1359809.018 1312157.476 1257516.7 1241611.874 1328486.788 1257659.397 1313624.551 1297910.764 1169589.244 1.027456125 1.162638101 1.121895984 1.075178065 1.061579423 1.135857563 1.075300071 1.123150335 1.109715031 1 20.15757052 RT(ph)ASPPPPPK ddPTM_HeLa_A486_30min_R1 3 RTASPPPPPK 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RT(0.602)AS(0.398)PPPPPK;RT(0.5)AS(0.5)PPPPPK;RT(0.5)AS(0.5)PPPPPK ;; 66.393 0.015237 1106590000 1007670 1097050 709590 453850 1085820 1081500 1191900 1223420 813310 1270150 TRUE FALSE FALSE 937037.5366 1010115.763 984362.2515 1056585.736 949626.3307 948075.5259 893674.0134 944873.9731 883808.3656 952096.1727 0.984183703 1.060938791 1.033889516 1.109746858 0.99740589 0.995777058 0.938638384 0.992414422 0.928276356 1 19.86074778 -6.119044154 2.769281535 0.967360382 1.047203672 0.474888135 0.036934112 0.228587551 3.397545023 0.012650821 0.012816337 7.60E-07 6.119044154 0.079843291 RT(ph)DALTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RT(0.952)DALT(0.048)S(0.006)S(0.994)PGR 119.58 0.016094 696110000 598880 922820 849530 666690 839550 724580 728060 797510 794720 753220 TRUE FALSE FALSE 732098.7899 1030735.772 1163806.499 703109.5866 755961.4542 762517.8884 572504.0333 601919.4221 954213.0144 565456.116 1.294704875 1.822839549 2.058172979 1.243437937 1.336905611 1.348500559 1.012464128 1.064484767 1.68751029 1 19.10905554 -5.290588587 23.48936484 1.243427562 1.734999119 0.42342553 0.25838458 302.3143019 243613.7459 0.072809639 0.108022448 5.12E-06 5.290588587 0.491571556 RT(ph)DALTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 1 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RT(0.542)DALT(0.458)S(0.001)S(0.999)PGR 115.24 0.029525 704510000 881280 931730 744450 230710 886050 779080 673980 708900 823180 857760 TRUE FALSE FALSE 819506.8229 857896.3215 1032720.977 537104.5394 774913.3469 682965.0307 505343.0754 547498.9452 894533.9052 642971.3129 1.274562032 1.334268426 1.606169601 0.835347594 1.20520672 1.062201403 0.785949645 0.851513799 1.391250103 1 19.29439485 -5.264250559 24.99992542 1.012469973 1.39792686 0.468784115 0.188275767 216.7018869 1927142.576 0.052769933 0.082388603 5.44E-06 5.264250559 0.385456887 RT(ph)EEPDRDER ddPTM_HeLa_A486_30min_R1 2 RTEEPDRDER 10 2 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 1 0 RT(1)EEPDRDER;RT(1)EEPDRDER ; 115.91 0.0022794 434850000 437960 440390 350300 168797 459070 430780 470390 461570 381940 504290 TRUE FALSE FALSE 407261.2656 405491.8925 485945.5414 392967.9465 401489.1599 377634.7435 352693.4467 356480.587 415046.8667 378012.5016 1.077375124 1.072694397 1.285527699 1.039563361 1.062105508 0.999000673 0.933020588 0.943039147 1.097971271 1 18.52807442 -5.791981752 1.950567101 0.989945963 1.136063913 0.405901313 0.072922918 0.32150515 2.519969113 0.02577931 0.032875701 1.61E-06 5.791981752 0.146117949 RT(ph)ESVPSDINNPVDR ddPTM_HeLa_A485_30min_R1 1 RTESVPSDINNPVDR 15 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 RT(0.652)ES(0.348)VPS(0.001)DINNPVDR 78.088 0.004854 597180000 135160 187320 208940 141010 260120 203850 223830 263180 186110 162500 TRUE FALSE FALSE 165225.8757 209225.4445 286235.6007 148713.0192 234221.5395 214523.2708 176006.892 198634.6923 223460.5699 121991.7406 1.35440215 1.715078771 2.346352297 1.219041703 1.919978667 1.758506516 1.442777119 1.62826345 1.831768026 1 16.89642395 -10.93857696 2.605580144 0.518246161 1.696426608 0.32070834 0.301456366 12445017.47 4765360.112 36276233.04 0.072785459 1.15E-11 10.93857696 1.178180447 RT(ph)FSLTEVR ddPTM_HeLa_A485_30min_R1 2 RTFSLTEVR 9 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 RT(0.781)FS(0.218)LT(0.001)EVR;RT(0.622)FS(0.378)LTEVR ; 117.98 0.00048385 640380000 255980 390430 427390 238055 432310 332920 334890 364070 293642 273431 TRUE FALSE FALSE 312921.8679 436087.3922 585499.3462 251059.3419 389267.6985 350351.1764 263338.0157 274781.2617 352573.256 205269.6838 1.524442685 2.124460778 2.852342028 1.223070729 1.896372086 1.706784801 1.282888008 1.338635382 1.717609972 1 17.64716105 -6.079897661 0.913832795 1.350806418 2.080474191 0.304657521 0.424268853 0.734114158 1.334653059 0.242334512 0.270444856 8.32E-07 6.079897661 0.729667773 RT(ph)FSLTEVR ddPTM_HeLa_A486_30min_R1 1 RTFSLTEVR 9 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 RT(0.591)FS(0.409)LTEVR 86.313 0.0036058 161550000 123540 108970 99764 36473 134310 93813 123500 124010 104860 111820 TRUE FALSE FALSE 114880.484 100334.8203 138395.2926 84910.98724 117463.5874 82239.30588 92598.99375 95775.63012 113949.3492 83819.54417 1.37056918 1.197033715 1.65111006 1.013021343 1.401386617 0.981147138 1.104742273 1.142640789 1.359460378 1 16.35499906 -5.282662184 24.98177931 1.151546358 1.385317332 0.334552091 0.168944895 959.9761907 1130004.614 0.045882585 0.068128468 5.22E-06 5.282662184 0.233770973 RT(ph)GTPSDPR ddPTM_HeLa_A485_30min_R1 7 RTGTPSDPR 9 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 RT(0.499)GT(0.499)PS(0.002)DPR;RT(0.843)GT(0.156)PS(0.001)DPR;RT(0.497)GT(0.497)PS(0.005)DPR;RT(0.978)GT(0.022)PSDPR;RT(0.496)GT(0.496)PS(0.008)DPR;RT(0.497)GT(0.497)PS(0.005)DPR;RT(0.498)GT(0.498)PS(0.004)DPR ;;;;;; 98.156 0.0028101 11933390000 3348800 4451520 3825320 3172320 4365320 4341700 4424910 4922070 3572090 4859830 TRUE FALSE FALSE 4093729.007 4972086.541 5240465.053 3345615.809 3930693.413 4569024.698 3479491.83 3714924.615 4288975.698 3648363.82 1.122072581 1.362826403 1.436387738 0.917018141 1.077385263 1.252348977 0.953712953 1.018244013 1.175588815 1 21.79881817 -5.258506563 24.99860684 1.061857737 1.312668655 0.481252816 0.119169723 225.0234081 1918035.157 0.033102234 0.054204152 5.51E-06 5.258506563 0.250810918 RT(ph)GTPSDPR ddPTM_HeLa_A486_30min_R1 4 RTGTPSDPR 9 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 RT(0.498)GT(0.498)PS(0.003)DPR;RT(0.497)GT(0.497)PS(0.005)DPR;RT(0.499)GT(0.499)PS(0.002)DPR;RT(0.499)GT(0.499)PS(0.003)DPR ;;; 64.439 0.019648 5042582000 3098020 3135870 2995020 1046925 4148940 2957470 3210030 3092190 2970860 3502230 TRUE FALSE FALSE 2880864.796 2887372.241 4154771.953 2437294.309 3628541.258 2592607.421 2406846.542 2388165.839 3228376.537 2625248.812 1.097368289 1.09984708 1.582620258 0.92840507 1.382170422 0.987566363 0.916807021 0.909691237 1.229741167 1 21.32402273 -6.293929651 24.14205097 0.997369653 1.215672552 0.242211242 0.184549074 614.5120129 456613.8579 0.063051969 0.055611609 5.08E-07 6.293929651 0.2183029 RT(ph)HTGEKPYACSHCDK ddPTM_HeLa_A485_30min_R1 1 RTHTGEKPYACSHCDK 16 2 A0A2R8Y595;A0A2R8YFL0;P49711;P49711-2 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 RT(0.641)HT(0.359)GEKPYACSHCDK 84.493 0.0012991 49594000 84289 68514 46113 91767 102330 87560 120100 128430 66809 125600 TRUE FALSE FALSE 103038.7973 76526.11631 63172.11762 96779.99884 92141.6659 92144.50621 94439.65387 96932.34113 80216.95349 94290.2315 1.092783373 0.811601744 0.66997521 1.026405358 0.977213275 0.977243398 1.001584707 1.028021032 0.850745111 1 16.52482069 RT(ph)NSDSALHQSTMTPTQPESFSSGSQDVHQK ddPTM_HeLa_A485_30min_R1 1 RTNSDSALHQSTMTPTQPESFSSGSQDVHQK 31 1 M0QXN6;M0QX46;Q6UUV9-3;Q6UUV9;Q6UUV9-2 M0QXN6 CRTC1 CREB-regulated transcription coactivator 1 1 0 RT(0.38)NS(0.241)DS(0.38)ALHQSTMTPTQPESFSSGSQDVHQK 300.93 8.57E-93 648470000 117230 280900 321160 51081 404090 173640 233460 214610 244190 132880 TRUE FALSE FALSE 143307.4091 313748.8115 439970.4486 53871.42569 363857.3808 182731.5219 183579.3638 161976.561 293196.6932 99755.46148 1.4365871 3.14517929 4.410489833 0.54003485 3.647493334 1.831794663 1.840293866 1.623736271 2.939154296 1 16.60610821 -6.397452581 17.30532174 1.8850113 2.655979595 0.112221719 1.106028856 4.658344558 625.2558245 0.380181535 0.335283951 4.00E-07 6.397452581 0.770968295 RT(ph)PDYFL ddPTM_HeLa_A485_30min_R1 2 RTPDYFL 7 1 P67775;P62714;H0YBN9;P67775-2 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 1 0 RT(1)PDYFL;RT(1)PDYFL ; 110.41 0.0039119 72647000 161759 202494 199641 200166 240390 178374 225730 216410 195239 252450 TRUE FALSE FALSE 197741.7315 226173.9118 273496.5137 211100.5617 216455.9275 187713.3868 177500.9415 163335.1082 234421.6765 189518.861 1.043388138 1.193411097 1.443109737 1.113876269 1.142133962 0.99047338 0.936587211 0.861840913 1.23693059 1 17.53198191 -6.001048733 2.037456245 0.99209101 1.219603792 0.328558459 0.131015756 0.360867049 3.01474106 0.048702768 0.053369769 9.98E-07 6.001048733 0.227512782 RT(ph)PDYFL ddPTM_HeLa_A486_30min_R1 1 RTPDYFL 7 1 P67775;P62714;H0YBN9;P67775-2 P67775 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 1 0 RT(1)PDYFL 93.598 0.0078758 51244000 150990 143000 121380 49086 155500 136450 153360 157200 136120 136780 TRUE FALSE FALSE 140406.3807 131668.1592 168381.5867 114274.6887 135995.74 119616.1863 114987.7059 121408.9917 147918.9912 102529.3977 1.369425588 1.28419909 1.642276171 1.114555349 1.326407285 1.16665258 1.121509621 1.184138348 1.442698333 1 16.6456781 -5.287696123 24.98660934 1.202774681 1.417190256 0.370288647 0.141646239 823.8054607 783953.0583 0.038754763 0.057501348 5.16E-06 5.287696123 0.214415575 RT(ph)PEEEFSVGDK ddPTM_HeLa_A486_30min_R1 1 RTPEEEFSVGDK 12 1 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 RT(1)PEEEFSVGDK 129.88 2.63E-05 69691000 193010 200950 95954 76675 136630 181380 222760 195880 166960 234770 TRUE FALSE FALSE 179480.9957 185025.9902 133109.9585 178503.2749 119492.5914 159003.1797 167023.0919 151282.4 181432.2272 175982.0639 1.019882321 1.051391182 0.756383665 1.014326523 0.679004375 0.903519235 0.949091562 0.859646697 1.030969993 1 17.42506887 -9.730799724 12.47469236 0.999999934 0.911941468 0.03927529 0.117639987 0 0 0.111696477 0.027090375 1.86E-10 9.730799724 -0.088058466 RT(ph)PS(ph)DDEEDNLFAPPK ddPTM_HeLa_A486_30min_R1 2 RTPSDDEEDNLFAPPK 16 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 RT(1)PS(1)DDEEDNLFAPPK;RT(1)PS(1)DDEEDNLFAPPK ; 124.69 1.82E-05 428390000 329620 388570 207345 170968 338610 432810 487620 439700 312290 464490 TRUE FALSE FALSE 306515.3402 357778.2981 287634.5369 398022.1442 296138.3764 379414.3027 365612.3185 339589.9086 339359.5486 348178.6807 0.880339197 1.027570951 0.826111858 1.143154841 0.850535638 1.089711472 1.050070951 0.975332286 0.974670672 1 18.40946834 -5.245294982 24.97525525 1.009003257 0.922963718 0.21507327 0.087087511 1417.221143 2192427.011 0.022303285 0.03847116 5.68E-06 5.245294982 -0.086039539 RT(ph)PS(ph)PPPR ddPTM_HeLa_A485_30min_R1 1 RTPSPPPR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RT(1)PS(1)PPPR 68.069 0.014037 479650000 50118 72823 78532 75118 94083 75193 104360 107150 63060 90831 TRUE FALSE FALSE 61266.57619 81339.01637 107584.2548 79221.50613 84715.76617 79129.98921 82062.63346 80871.2945 75715.56358 68188.50332 0.898488355 1.192855282 1.577747707 1.16180151 1.242376091 1.160459394 1.203467292 1.185996034 1.110386061 1 16.0572409 -8.07852516 0.857696258 0.998791823 1.223761318 0.142305982 0.154861912 1.406243051 2.302471441 0.154141773 0.054655483 8.35E-09 8.07852516 0.224969495 RT(ph)PS(ph)VGKAMDT(ph)PK ddPTM_HeLa_A486_30min_R1 1 RTPSVGKAMDTPK 13 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 3 0 RT(1)PS(1)VGKAMDT(1)PK 41.412 0.030097 473230000 188920 606010 663660 3035.5 940190 402220 239920 421330 554000 42434 TRUE FALSE FALSE 175677.6836 557987.5605 920646.9254 7066.797406 822262.6033 352598.1859 179889.4784 325402.3566 602021.1661 31808.2502 5.523022564 17.54222747 28.94365203 0.222168694 25.85060788 11.08511734 5.655434588 10.2301244 18.92657289 1 14.95711339 -6.503015585 24.66963141 9.529075157 15.89444042 0.110061994 8.954682874 1549.079253 1923928.904 3.091784 2.689089349 3.14E-07 6.503015585 6.365365259 RT(ph)PSDDEEDNLFAPPK ddPTM_HeLa_A485_30min_R1 1 RTPSDDEEDNLFAPPK 16 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 RT(0.556)PS(0.444)DDEEDNLFAPPK 62.684 0.018186 252300000 230740 422690 516610 269650 426580 321990 310200 350580 375620 320050 TRUE FALSE FALSE 282067.317 472119.9186 707725.5369 284380.2967 384108.1974 338848.8985 243923.2359 264599.7053 451003.4886 240267.4251 1.173972364 1.96497681 2.945574235 1.183599053 1.598669471 1.410298955 1.015215591 1.101271657 1.877089616 1 17.87428154 RT(ph)PSDDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGK ddPTM_HeLa_A485_30min_R1 1 RTPSDDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGK 36 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 RT(0.574)PS(0.426)DDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGK 179.78 7.09E-21 943050000 83399 105530 62146 71611 116670 159520 231300 318860 75112 106990 TRUE FALSE FALSE 101950.8198 117870.8155 85136.39151 75522.9276 105053.9251 167872.2205 181880.8655 240659.085 90186.28943 80319.36201 1.269318098 1.46752679 1.059973453 0.940282962 1.307952684 2.090059188 2.264470993 2.996277349 1.122846188 1 16.29346019 -6.217705416 4.97048059 2.044296144 1.191276807 0.258761362 0.553614888 0.232113314 13.83229572 0.18262585 0.179036183 6.06E-07 6.217705416 -0.853019336 RT(ph)PSEADRWLEEVSK ddPTM_HeLa_A485_30min_R1 1 RTPSEADRWLEEVSK 15 2 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 RT(0.5)PS(0.5)EADRWLEEVSK 109.89 0.0011762 227390000 72807 89881 81202 77538 163360 149900 205040 276380 100640 150740 TRUE FALSE FALSE 89002.66597 100391.8011 111241.9989 81773.7046 147095.3048 157748.5322 161231.529 208597.3717 120837.5249 113163.2922 0.786497673 0.887141043 0.983021939 0.722616875 1.299849995 1.393990305 1.424768809 1.84333071 1.067815566 1 16.78804653 -5.859530075 5.209579921 1.397017872 0.859108413 0.528175237 0.225567917 0.151851043 6.548157623 0.068540838 0.078622406 1.38E-06 5.859530075 -0.537909458 RT(ph)PSEADRWLEEVSK ddPTM_HeLa_A486_30min_R1 1 RTPSEADRWLEEVSK 15 2 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 RT(0.734)PS(0.266)EADRWLEEVSK 175.32 6.32E-12 393500000 238140 222300 191390 136870 406320 292840 463620 469920 201860 427310 TRUE FALSE FALSE 221447.6158 204684.1384 265501.3336 318640.277 355355.5568 256712.3782 347617.3723 362929.4743 219357.3873 320308.7947 0.691356652 0.639021288 0.828891801 0.994790909 1.109415547 0.801452793 1.085257034 1.133061222 0.684830985 1 18.28910388 -4.996759044 2.989937113 0.980731398 0.665442363 0.464794009 0.131700973 0.211545343 3.854845806 0.035738156 0.079783098 1.01E-05 4.996759044 -0.315289035 RT(ph)PSEAER ddPTM_HeLa_A486_30min_R1 3 RTPSEAER 8 1 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 RT(0.647)PS(0.353)EAER;RT(0.637)PS(0.363)EAER;RT(0.797)PS(0.203)EAER ;; 87.568 0.0037862 208030000 225689 177004 220390 94787 227760 236089 235186 200652 226104 230632 TRUE FALSE FALSE 209869.3666 162977.5584 305730.9102 220668.9263 199192.217 206962.7396 176339.9753 154967.9198 245702.8768 172880.246 1.213958051 0.94271938 1.768454854 1.276426494 1.152197672 1.197145101 1.020012288 0.89638882 1.421231647 1 17.3994135 -5.870191995 3.003434546 1.100294618 1.308509027 0.139131685 0.229145733 0.532533325 9.645636792 0.076731106 0.089905133 1.35E-06 5.870191995 0.208214409 RT(ph)PSLALTPPQAEQEVDVLDVNVR ddPTM_HeLa_A486_30min_R1 3 RTPSLALTPPQAEQEVDVLDVNVR 24 1 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 RT(0.709)PS(0.291)LALTPPQAEQEVDVLDVNVR;RT(0.56)PS(0.43)LALT(0.009)PPQAEQEVDVLDVNVR;RT(0.649)PS(0.334)LALT(0.017)PPQAEQEVDVLDVNVR ;; 173.24 1.76E-14 295467000 77578 97970 79483 31837.2 115986 77875 88188 85167 76063 97327 TRUE FALSE FALSE 72140.18281 90206.5004 110260.9462 74118.61056 101437.9544 68267.57427 66122.42964 65776.33328 82656.20208 72955.68571 0.988821942 1.23645607 1.511341373 1.015940154 1.390405057 0.935740287 0.906336895 0.901592969 1.132964501 1 16.1547328 -6.279848102 24.60484692 0.964864587 1.232923968 0.392925805 0.157087846 676.0001848 903529.6017 0.054469362 0.048129296 5.25E-07 6.279848102 0.268059381 RT(ph)PSTKPTVR ddPTM_HeLa_A486_30min_R1 1 RTPSTKPTVR 10 2 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RT(0.621)PS(0.303)T(0.075)KPTVR 112.08 0.00063574 275880000 109840 107570 70816 47850 106150 118180 139790 146680 78384 108190 TRUE FALSE FALSE 102140.7832 99045.76144 98237.85172 111397.2182 92835.67719 103600.1532 104813.0635 113284.166 85178.38823 81098.5198 1.259465444 1.221301716 1.211339639 1.373603593 1.144727147 1.277460469 1.292416479 1.396870945 1.050307557 1 16.30738796 -7.890043348 6.442270297 1.002744474 1.267915002 0.665652206 0.070307266 0.118360708 5.822364346 0.067090689 0.017405952 1.29E-08 7.890043348 0.265170528 RT(ph)PTAEER ddPTM_HeLa_A485_30min_R1 5 RTPTAEER 8 1 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;F8WCB8 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 RT(1)PTAEER;RT(1)PTAEER;RT(1)PTAEER;RT(1)PTAEER;RT(1)PTAEER ;;;; 127.42 0.00050692 1644933000 564403 695120 533461 676120 660563 549799 627077 711652 605981 823284 TRUE FALSE FALSE 689952.5002 776408.2373 730810.4231 713054.7236 594795.0283 578585.6255 493096.8762 537118.2312 727595.8283 618054.4502 1.116329637 1.256213327 1.182436956 1.153708582 0.962366711 0.936140214 0.797821092 0.869046782 1.177235805 1 19.23737442 -5.744307472 3.41982929 0.938280288 1.189548108 0.547486022 0.097633546 0.172355915 4.220854418 0.031399787 0.039321684 1.80E-06 5.744307472 0.25126782 RT(ph)PTAEER ddPTM_HeLa_A486_30min_R1 2 RTPTAEER 8 1 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;F8WCB8 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 RT(1)PTAEER;RT(1)PTAEER ; 128.01 0.00050048 1458500000 579020 402810 533630 243840 517720 683570 572270 478630 544350 672540 TRUE FALSE FALSE 538433.6881 370889.8686 740265.8271 567671.843 452782.7301 599238.0834 429081.9931 369656.3974 591534.6963 504131.6065 1.068041918 0.735700487 1.468397969 1.126038986 0.898143906 1.188654065 0.85113091 0.733253763 1.173373557 1 18.94344088 -6.771781261 24.99945916 0.917210701 1.076509704 0.096975707 0.206717957 487.3306159 1178014.552 0.086291214 0.058899305 1.69E-07 6.771781261 0.159299003 RT(ph)PTMPQEEAAACPPHILPPEK ddPTM_HeLa_A485_30min_R1 2 RTPTMPQEEAAACPPHILPPEK 22 1 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 1 0 RT(0.994)PT(0.006)MPQEEAAACPPHILPPEK;RT(0.989)PT(0.011)MPQEEAAACPPHILPPEK ; 198.4 8.43E-27 785420000 953370 758390 729460 1258670 1164180 854220 1215560 890280 869040 1645680 TRUE FALSE FALSE 1165443.867 847077.1134 999317.6094 1327427.955 1048270.152 898945.6383 955845.6758 671937.4341 1043448.357 1235442.262 0.943341427 0.685646864 0.808874392 1.074455679 0.848497889 0.727630635 0.773687047 0.543884125 0.844594999 1 20.23659616 -6.192363679 5.797660455 0.749324637 0.870703248 0.083769656 0.141527395 0.466002844 29.54031053 0.047243501 0.04707213 6.42E-07 6.192363679 0.121378611 RT(ph)PTMPQEEAAACPPHILPPEK ddPTM_HeLa_A486_30min_R1 4 RTPTMPQEEAAACPPHILPPEK 22 1 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 1 0 RT(0.997)PT(0.003)MPQEEAAACPPHILPPEK;RT(0.994)PT(0.006)MPQEEAAACPPHILPPEK;RT(0.927)PT(0.073)MPQEEAAACPPHILPPEK;RT(0.999)PT(0.001)MPQEEAAACPPHILPPEK ;;; 180.65 1.73E-19 1519550000 2057270 2488150 1441940 886340 2244290 2423530 2757860 2744510 2025140 2658620 TRUE FALSE FALSE 1913065.997 2290979.932 2000297.784 2063444.313 1962790.221 2124539.509 2067814.258 2119644.985 2200680.766 1992884.247 0.959948376 1.14958003 1.003720004 1.035406003 0.98489926 1.066062674 1.037598777 1.063606674 1.104269236 1 20.92642649 RT(ph)PTMPQEEAAEK ddPTM_HeLa_A485_30min_R1 4 RTPTMPQEEAAEK 13 1 Q9NYV4-2 Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 RT(0.975)PT(0.025)MPQEEAAEK;RT(1)PTMPQEEAAEK;RT(0.976)PT(0.024)MPQEEAAEK;RT(0.989)PT(0.011)MPQEEAAEK ;;; 154.39 3.02E-08 2858380000 2252160 1795250 1522080 2924340 2493290 2041150 2959370 2401220 1926480 3827200 TRUE FALSE FALSE 2753145.222 2005188.871 2085160.731 3084089.289 2245049.293 2148021.458 2327076.424 1812317.03 2313106.865 2873149.474 0.958232506 0.697906214 0.725740429 1.073417626 0.781389661 0.747619112 0.809939213 0.630777148 0.805077106 1 21.45420162 -5.958119666 24.99998184 0.774996817 0.852771397 0.04422026 0.131995445 422.853112 252415.4274 0.040711189 0.046162109 1.10E-06 5.958119666 0.07777458 RT(ph)PTMPQEEAAEK ddPTM_HeLa_A486_30min_R1 4 RTPTMPQEEAAEK 13 1 Q9NYV4-2 Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 RT(0.851)PT(0.149)MPQEEAAEK;RT(0.991)PT(0.009)MPQEEAAEK;RT(0.975)PT(0.025)MPQEEAAEK;RT(0.996)PT(0.004)MPQEEAAEK ;;; 163.18 7.21E-12 3878750000 3110300 3064140 1679890 1446730 2747790 3503290 3884460 3675060 2600570 4011950 TRUE FALSE FALSE 2892284.032 2821326.387 2330388.397 3368060.554 2403136.556 3071089.699 2912527.022 2838329.064 2825989.501 3007331.607 0.9617443 0.938149415 0.774902373 1.119949841 0.799092641 1.021200885 0.968475514 0.943803157 0.939699997 1 21.52005253 -5.889710275 0.951619134 0.964272853 0.91770412 0.036983486 0.093376472 2.361883983 4.646340657 0.045476005 0.06201129 1.29E-06 5.889710275 -0.046568732 RT(ph)PVSYQNTMSR ddPTM_HeLa_A485_30min_R1 2 RTPVSYQNTMSR 12 1 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 RT(1)PVSYQNTMSR;RT(1)PVSYQNTMSR ; 117.2 0.00018851 465820000 240680 292940 266300 223650 257600 223330 217424 213251 191379 261700 TRUE FALSE FALSE 294218.4357 327196.7848 364815.4517 235867.4332 231952.4395 235023.2135 170969.5862 160950.8579 229787.0099 196463.0062 1.497576777 1.665437128 1.856916774 1.200569195 1.180641811 1.196272102 0.870238064 0.819242569 1.169619738 1 17.58389815 -5.450709815 3.202177631 1.033238265 1.671112917 0.787009366 0.146736221 0.118959711 2.37173135 0.047144316 0.07131402 3.54E-06 5.450709815 0.637874652 RT(ph)PVSYQNTMSR ddPTM_HeLa_A486_30min_R1 2 RTPVSYQNTMSR 12 1 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 RT(1)PVSYQNTMSR;RT(1)PVSYQNTMSR ; 121.45 7.97E-05 634330000 295000 331240 227294 76174 237750 237180 257650 219199 209299 255160 TRUE FALSE FALSE 274322.0234 304991.336 315308.3239 177336.9216 207929.1781 207919.1431 193183.2449 169292.1728 227441.2058 191266.2752 1.434241468 1.594590242 1.648530687 0.927172976 1.087118876 1.08706641 1.010022518 0.885112509 1.189133869 1 17.54522299 -5.260593833 24.99999967 1.026091733 1.562667766 0.869362047 0.094609132 23.91782264 707160.1249 0.025689663 0.041370918 5.49E-06 5.260593833 0.536576032 HMRT(ph)HSER ddPTM_HeLa_A485_30min_R1 2 HMRTHSER 8 1 L0B1V4 L0B1V4 REST 1 0 HMRT(0.999)HS(0.001)ER;HMRT(0.999)HS(0.001)ER ; 60.972 0.031229 1235480000 938320 900740 691690 459250 874340 570980 311910 343750 335590 212731 TRUE FALSE FALSE 1147046.047 1006073.708 947574.9146 484337.6646 787287.6396 600875.6299 245267.8804 259444.7735 402939.8348 159701.0767 7.182456564 6.299730273 5.933428466 3.032776451 4.929757869 3.762502058 1.53579353 1.624564961 2.523087778 1 17.28501451 -4.775218185 0.317705536 0.912431327 10.77176449 0.859838639 0.780242713 1.891224644 0.198873523 0.906290097 7.037778621 1.68E-05 4.775218185 9.859333158 up LEGDRS(ph)EGS(ph)GQENENEDEE ddPTM_HeLa_A486_30min_R1 1 LEGDRSEGSGQENENEDEE 19 1 Q58WW2;Q58WW2-2;Q58WW2-4;Q58WW2-3 Q58WW2 DCAF6 DDB1- and CUL4-associated factor 6 2 0 LEGDRS(1)EGS(1)GQENENEDEE 147.87 7.63E-08 188370000 394560 283560 156040 79880 225480 225880 239840 248810 162310 232740 TRUE FALSE FALSE 366903.3815 261089.6729 216462.8669 185964.6769 197198.1959 198013.2222 179829.4952 192161.3945 176379.1615 174460.3891 2.103075566 1.496555603 1.240756529 1.065942119 1.130332203 1.135003901 1.030775502 1.101461458 1.010998327 1 17.41253999 -3.943477523 1.020678698 1.065676288 3.297600717 0.981030553 0.044338531 0.383252578 0.209874047 0.014082333 1.086093084 0.0001139 3.943477523 2.231924429 up RT(ph)QSLSALPK ddPTM_HeLa_A485_30min_R1 2 RTQSLSALPK 10 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 RT(0.536)QS(0.463)LS(0.001)ALPK;RT(0.748)QS(0.251)LS(0.001)ALPK ; 108.59 0.00070606 1506790000 3061600 3513500 2445130 3221900 3664300 3643800 4955400 5242800 2596230 3972400 TRUE FALSE FALSE 3742642.358 3924373.262 3349685.337 3397904.239 3299469.426 3834583.734 3896638.308 3956995.08 3117269.547 2982153.787 1.255013197 1.315952678 1.123243661 1.139412814 1.106404854 1.285843725 1.306652368 1.326891691 1.045308113 1 21.50792323 -7.887848185 6.137140933 1.002728085 1.228072581 0.535198449 0.078524559 0.173663858 8.052908754 0.084100565 0.021842745 1.29E-08 7.887848185 0.225344496 RT(ph)QSSGQDGRPQEEPPAEEDLQQITVQVEPACSVEIVVPK ddPTM_HeLa_A486_30min_R1 1 RTQSSGQDGRPQEEPPAEEDLQQITVQVEPACSVEIVVPK 40 2 O60331-4;O60331;O60331-2;O60331-3 O60331-4 PIP5K1C Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma 1 0 RT(0.332)QS(0.332)S(0.332)GQDGRPQEEPPAEEDLQQIT(0.003)VQVEPACSVEIVVPK 55.574 0.013945 43825000 7722.6 7402.5 5200.5 4180.4 8340.6 10938 9955.8 11296 8821.5 9416.9 TRUE FALSE FALSE 7181.28562 6815.898941 7214.272874 9732.182466 7294.444175 9588.580769 7464.753538 8724.14739 9586.154723 7058.846946 1.017345421 0.96558248 1.0220186 1.378721276 1.033376163 1.358377769 1.057503243 1.23591678 1.358034081 1 12.78521682 -5.084275203 9.369113229 1.206190888 0.992013517 0.331917412 0.131415872 0.426515904 44.83580712 0.033166461 0.05761598 8.24E-06 5.084275203 -0.214177371 RT(ph)RS(ph)RS(ph)PLGFYVHLK ddPTM_HeLa_A485_30min_R1 1 RTRSRSPLGFYVHLK 15 3 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 3 0 RT(0.944)RS(0.955)RS(0.944)PLGFY(0.158)VHLK 56.327 0.021552 109170000 17704 28376 19878 31711 45637 32350 45164 51108 25936 44041 TRUE FALSE FALSE 21642.19372 31694.32636 27231.69939 33443.29163 41093.22004 34043.79598 35514.34244 38573.68287 31141.1173 33062.38921 0.654586503 0.958621779 0.823645842 1.011520717 1.242899289 1.02968348 1.074161405 1.16669375 0.941889502 1 15.01290336 -4.17559823 0.796389987 1.080515066 0.414573256 0.590453623 0.100755008 1.999350067 0.893490466 0.038511952 1.220539558 6.67E-05 4.17559823 -0.66594181 RT(ph)RS(ph)RS(ph)PLGFYVHLK ddPTM_HeLa_A486_30min_R1 2 RTRSRSPLGFYVHLK 15 3 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 3 0 RT(0.983)RS(0.992)RS(0.988)PLGFY(0.037)VHLK;RT(0.927)RS(0.927)RS(0.927)PLGFY(0.22)VHLK ; 74.953 0.0041492 180975000 83038 63109 59563 57350 112600 86493 104563 120515 65323 107240 TRUE FALSE FALSE 77217.46501 58108.013 82627.38875 133513.6983 98476.65805 75822.37306 78400.23145 93076.36532 70985.25024 80386.40598 0.960578646 0.722858701 1.027877634 1.660898963 1.225041185 0.943223822 0.975292159 1.157862006 0.883050428 1 16.29466393 -10.06462885 13.33462459 0.999998246 1.070091326 0.004900548 0.239828872 0 0 0.252768191 0.061305291 8.62E-11 10.06462885 0.07009308 RT(ph)SDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK ddPTM_HeLa_A485_30min_R1 1 RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 35 1 H7C3A2;Q8NHH9-2;Q8NHH9 H7C3A2 ATL2 Atlastin-2 1 0 RT(0.485)S(0.485)DPS(0.03)AAVNHVSSTTSLGENYEDDDLVNSDEVMK 216.6 2.73E-39 268000000 39462 60703 52228 19653 61652 32027 45594 39899 45515 42554 TRUE FALSE FALSE 48240.18576 67801.6878 71549.31059 20726.59363 55513.71041 33703.8842 35852.46943 30113.70769 54649.44301 31946.07095 1.510050667 2.122379554 2.239690468 0.648799461 1.73773202 1.055024396 1.122281031 0.942641984 1.710678071 1 14.96335088 -5.248834496 24.99939527 1.187881252 1.973874184 0.499111887 0.35937478 619.8929715 1229438.112 0.093349705 0.160276411 5.64E-06 5.248834496 0.785992932 RT(ph)SDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK ddPTM_HeLa_A486_30min_R1 2 RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 35 1 H7C3A2;Q8NHH9-2;Q8NHH9 H7C3A2 ATL2 Atlastin-2 1 0 RT(0.499)S(0.499)DPS(0.002)AAVNHVSSTTSLGENYEDDDLVNSDEVMK;RT(0.488)S(0.488)DPS(0.013)AAVNHVS(0.002)S(0.002)T(0.002)T(0.002)S(0.002)LGENYEDDDLVNSDEVMK ; 152.28 1.01E-09 326980000 52906 49096 47679 7532.1 62096 33568 43956 38509 51213 20072.5 TRUE FALSE FALSE 49197.56261 45205.45416 66141.58569 17535.10945 54307.34066 29426.72145 32957.74388 29741.34135 55652.18407 15046.21535 3.26976329 3.004440193 4.39589519 1.165416621 3.609368828 1.955755701 2.190434147 1.976665936 3.698749671 1 13.87711302 -6.141598077 0.092483295 3.70E-12 5.414481054 0.25582617 0.930937909 42.86996868 1.516865599 31.91933486 54.31117803 7.22E-07 6.141598077 5.414481054 RT(ph)SFDDRLEDDDFDLIEENLGVK ddPTM_HeLa_A485_30min_R1 2 RTSFDDRLEDDDFDLIEENLGVK 23 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 RT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK;RT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK ; 71.535 0.0074262 51062000 42355 44282 44541 58969 66403 55162 69110 70633 45735 80019 TRUE FALSE FALSE 51776.72363 49460.3947 61018.56941 62190.32715 59791.68416 58050.19702 54344.08392 53310.146 54913.59499 60071.73594 0.861914889 0.823355509 1.015761713 1.035267688 0.995338044 0.966347919 0.90465313 0.887441409 0.914133646 1 15.87439873 -4.751252385 24.99987465 0.962352817 0.842635147 0.512403182 0.047644387 192.2359446 471756.5108 0.01412299 0.036459621 1.77E-05 4.751252385 -0.11971767 RT(ph)SFDDRLEDDDFDLIEENLGVK ddPTM_HeLa_A486_30min_R1 1 RTSFDDRLEDDDFDLIEENLGVK 23 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 RT(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK 90.832 0.0019798 25786000 29894 29669 23716 13099 31873 33542 36716 35799 28217 35517 TRUE FALSE FALSE 27798.58497 27317.92039 32899.47034 30495.13399 27875.19114 29403.92907 27529.26846 27648.34919 30662.87228 26623.31202 1.044144506 1.026090231 1.235739201 1.145429763 1.047021915 1.104442943 1.03402869 1.038501489 1.151730192 1 14.70040244 -5.769773254 24.98100789 1.065207439 1.115431469 0.120446207 0.066129569 434.6705981 1302935.415 0.021313281 0.024553595 1.70E-06 5.769773254 0.05022403 RT(ph)SFSFQK ddPTM_HeLa_A485_30min_R1 1 RTSFSFQK 8 1 H0Y7F8;Q9BPZ7-4;Q9BPZ7-3;Q9BPZ7-2;Q9BPZ7 H0Y7F8 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 1 0 RT(0.739)S(0.261)FSFQK 105.94 0.0018508 1067100000 1892400 2067300 1766100 1835000 2287100 1845200 2260000 2679400 1657800 2120800 TRUE FALSE FALSE 2313357.851 2309052.752 2419453.884 1935241.404 2059388.294 1941811.819 1777132.537 2022272.949 1990505.254 1592123.59 1.453001429 1.45029743 1.519639492 1.215509534 1.293485195 1.219636359 1.116202629 1.270173346 1.250220313 1 20.6025209 -1 0.134354792 0.965884034 2.830001857 0.723719307 0.079808607 43.9370823 0.397603304 0.408761005 15.60713457 0.1 1 1.864117823 RT(ph)SFSTSDVSK ddPTM_HeLa_A486_30min_R1 2 RTSFSTSDVSK 11 1 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 RT(0.484)S(0.484)FS(0.031)T(0.001)SDVSK;RT(0.474)S(0.474)FS(0.015)T(0.015)S(0.021)DVS(0.001)K ; 78.191 0.0053445 325910000 589000 619280 500830 156482 736110 565790 541870 638700 557470 524600 TRUE FALSE FALSE 547714.1416 570205.9974 694764.7887 364298.0042 643780.2198 495988.5823 406288.3947 493281.9527 605791.9485 393236.7454 1.392835608 1.450032338 1.766785014 0.926408858 1.637131391 1.261297649 1.033190309 1.254414697 1.540527317 1 18.58503861 -5.249379979 24.99918826 1.256039352 1.527899088 0.259794413 0.23053002 1157.491692 2399481.18 0.061505025 0.10549245 5.63E-06 5.249379979 0.271859736 RT(ph)SFYLPK ddPTM_HeLa_A485_30min_R1 2 RTSFYLPK 8 1 Q9NS23-3;Q9NS23-4;Q9NS23-2;Q9NS23-5;Q9NS23 Q9NS23-3 RASSF1 Ras association domain-containing protein 1 1 0 RT(0.627)S(0.373)FYLPK;RT(0.6)S(0.4)FYLPK ; 67.153 0.016699 1209510000 1192920 1330610 1138800 1354580 1851190 1420710 1808230 1892530 1350020 1853040 TRUE FALSE FALSE 1458280.938 1486213.265 1560089.509 1428577.275 1666879.024 1495096.179 1421886.889 1428384.05 1620956.631 1391111.231 1.04828493 1.068364076 1.121469998 1.026932458 1.198235617 1.074749557 1.022123075 1.026793558 1.165224315 1 20.40780635 -9.457386414 7.966195422 1.000000002 1.082211796 0.159534012 0.057471671 0 0 0.055007539 0.013341288 3.49E-10 9.457386414 0.082211794 RT(ph)SFYLPK ddPTM_HeLa_A486_30min_R1 2 RTSFYLPK 8 1 Q9NS23-3;Q9NS23-4;Q9NS23-2;Q9NS23-5;Q9NS23 Q9NS23-3 RASSF1 Ras association domain-containing protein 1 1 0 RT(0.5)S(0.5)FYLPK;RT(0.497)S(0.497)FY(0.006)LPK ; 76.682 0.010123 1600890000 1201350 1124660 817440 597370 1230350 1269340 1369320 1477450 1038750 1473180 TRUE FALSE FALSE 1117141.569 1035537.846 1133974.66 1390707.549 1076028.03 1112741.737 1026701.653 1141066.888 1128789.686 1104286.139 1.011641394 0.937744131 1.026884808 1.259372458 0.974410519 1.007657071 0.929742407 1.033307262 1.022189491 1 20.07468262 RT(ph)SLPCIPR ddPTM_HeLa_A486_30min_R1 1 RTSLPCIPR 9 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RT(0.681)S(0.319)LPCIPR 118.87 0.00044696 476760000 78662 93341 83783 29002 94198 91332 96357 107580 79568 82293 TRUE FALSE FALSE 73148.20001 85944.31922 116226.0214 67518.12168 82382.80848 80064.38644 72247.45944 83086.38245 86465.01831 61686.29716 1.185809546 1.393248147 1.884146508 1.094540032 1.335512298 1.297928229 1.17120759 1.346917975 1.401689229 1 15.91266243 RT(ph)SMGGTQQQFVEGVR ddPTM_HeLa_A485_30min_R1 2 RTSMGGTQQQFVEGVR 16 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 RT(0.86)S(0.14)MGGTQQQFVEGVR;RT(0.62)S(0.38)MGGTQQQFVEGVR ; 250.45 2.62E-42 1507240000 333010 388810 304090 324820 345510 350220 493430 566310 352140 601000 TRUE FALSE FALSE 407086.9256 434277.9473 416585.5452 342564.0941 311109.8112 368556.9777 388004.6495 427421.5846 422811.268 451181.7606 0.902268135 0.96253436 0.923320891 0.759259624 0.6895443 0.816870295 0.859974147 0.947337907 0.937119593 1 18.78334922 -7.263633316 2.923425729 0.96280823 0.840370325 0.335320172 0.075877567 0.390748854 6.687712246 0.054690054 0.024947881 5.45E-08 7.263633316 -0.122437904 RT(ph)SMGGTQQQFVEGVR ddPTM_HeLa_A486_30min_R1 2 RTSMGGTQQQFVEGVR 16 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 RT(0.5)S(0.5)MGGTQQQFVEGVR;RT(0.5)S(0.5)MGGTQQQFVEGVR ; 182.22 9.74E-18 1375040000 235046 239021 282914 109114 347750 281707 379260 362070 292299 329270 TRUE FALSE FALSE 218570.4892 220080.1055 392465.8775 254022.9063 304131.9524 246952.8545 284365.1366 279634.5649 317635.7127 246818.6488 0.885550951 0.891667248 1.590098153 1.029188465 1.232208157 1.000543742 1.152121762 1.132955578 1.286919421 1 17.91309188 -4.593301787 24.99999972 1.176696967 0.886964293 0.329516869 0.165124457 43.73856847 15526.12604 0.039933598 0.105654395 2.55E-05 4.593301787 -0.289732674 RT(ph)SNERPGSGQGQGR ddPTM_HeLa_A485_30min_R1 2 RTSNERPGSGQGQGR 15 2 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RT(0.88)S(0.12)NERPGSGQGQGR;RT(0.811)S(0.189)NERPGSGQGQGR ; 160.67 3.61E-11 415770000 55742 85146 75665 56609 84167 76351 88619 101838 73380 77777 TRUE FALSE FALSE 68141.61559 95103.08403 103656.6322 59701.40633 75787.03795 80348.6203 69684.8267 76862.07082 88106.69292 58388.62528 1.167035793 1.628794711 1.775288109 1.022483507 1.297976063 1.376100566 1.193465788 1.316387746 1.508970155 1 15.83339972 -5.261414088 25 1.263753407 1.534215043 0.280417224 0.202803918 3.052415341 3015276.317 0.05568501 0.089019972 5.48E-06 5.261414088 0.270461636 RT(ph)SNERPGSGQGQGR ddPTM_HeLa_A486_30min_R1 1 RTSNERPGSGQGQGR 15 2 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RT(0.78)S(0.22)NERPGSGQGQGR 163.11 3.11E-11 2484600000 91616 87150 91214 31683 110130 89878 104970 100770 84780 100450 TRUE FALSE FALSE 85194.19151 80243.91661 126534.5036 73759.62517 96316.46848 78789.76617 78705.39574 77826.87079 92128.79866 75296.66618 1.131447059 1.065703446 1.680479496 0.979586865 1.2791598 1.046391164 1.045270657 1.033603143 1.223544193 1 16.20029837 -6.027235473 1.598984807 1.071940946 1.246822824 0.137388425 0.185223513 0.775755971 4.0227031 0.073254417 0.07962066 9.39E-07 6.027235473 0.174881879 RT(ph)SPGGFK ddPTM_HeLa_A486_30min_R1 1 RTSPGGFK 8 1 Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7;Q5MIZ7-5 Q5MIZ7-3 SMEK2 Serine/threonine-protein phosphatase 4 regulatory subunit 3B 1 0 RT(0.5)S(0.5)PGGFK 69.721 0.0067993 0 91183 96079 65128 36546 104820 99661 114440 110890 79204 122350 TRUE FALSE FALSE 84791.54257 88465.35013 90347.30579 85080.93493 91672.49819 87365.8391 85805.90158 85642.76771 86069.46649 91712.76364 0.92453372 0.964591477 0.985111583 0.927689141 0.999560961 0.95260284 0.935593893 0.933815145 0.938467702 1 16.48483491 RT(ph)SPQVLGSILK ddPTM_HeLa_A485_30min_R1 3 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 RT(0.5)S(0.5)PQVLGSILK;RT(0.655)S(0.345)PQVLGSILK;RT(0.5)S(0.5)PQVLGSILK ;; 162.59 2.44E-10 15296310000 8124900 9183540 8323110 8528090 12221150 9966810 12460700 14467790 8966380 11209550 TRUE FALSE FALSE 9932255.974 10257475.12 11402174.74 8993957.962 11004369.39 10488656.76 9798369.65 10919541.82 10765850.22 8415215.481 1.180273517 1.218920079 1.354947448 1.068773341 1.307675296 1.246391941 1.164363488 1.297595034 1.279331497 1 23.00456878 -10.9499195 2.57874545 0.824964703 1.235690634 0.447487592 0.078457907 3969963.739 2077766.109 4162583.615 0.018786341 1.12E-11 10.9499195 0.410725931 RT(ph)SPQVLGSILK ddPTM_HeLa_A486_30min_R1 3 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 RT(0.674)S(0.326)PQVLGSILK;RT(0.5)S(0.5)PQVLGSILK;RT(0.5)S(0.5)PQVLGSILK ;; 176.04 3.76E-11 8452020000 5060470 5461190 3887980 2133540 6105110 5185940 6352640 6494150 4315710 5665420 TRUE FALSE FALSE 4705757.185 5028425.415 5393509.98 4966988.943 5339350.176 4546151.45 4763142.281 5015573.811 4689799.218 4246761.956 1.108081224 1.184061049 1.270028797 1.169594386 1.257275597 1.070498299 1.121593894 1.181034836 1.104323545 1 22.01793181 -6.269136769 24.99904504 1.108436278 1.1994893 0.409840817 0.06038258 675.3380706 2193308.592 0.020954708 0.018826522 5.38E-07 6.269136769 0.091053022 RT(ph)SPSSLPGR ddPTM_HeLa_A485_30min_R1 1 RTSPSSLPGR 10 1 Q5SNT2;H0Y4R5 Q5SNT2 TMEM201 Transmembrane protein 201 1 0 RT(0.473)S(0.473)PS(0.039)S(0.015)LPGR 52.132 0.010432 0 149020 118850 94222 193110 109670 155940 183450 248650 112880 275940 TRUE FALSE FALSE 182168.9849 132748.4736 129078.6387 203659.1103 98750.86973 164104.7773 144254.4089 187668.1976 135533.9806 207153.2363 0.879392416 0.640822591 0.623107034 0.983132651 0.476704451 0.792190266 0.696365702 0.905939009 0.654269192 1 17.66033883 -11.20947141 0.369958065 1.326568066 0.726167404 0.219839851 0.145708275 73.685137 3.731944237 20.04427269 0.09981473 6.17E-12 11.20947141 -0.600400662 RT(ph)SSEDNLYLAVLR ddPTM_HeLa_A485_30min_R1 3 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.333)S(0.333)S(0.333)EDNLYLAVLR;RT(0.333)S(0.333)S(0.333)EDNLYLAVLR;RT(0.619)S(0.154)S(0.227)EDNLYLAVLR ;; 195.92 1.38E-18 1460290000 160044 223507 249993 176266 273017 201046 251796 276319 188226 207222 TRUE FALSE FALSE 195645.2357 249644.1994 342475.8138 185894.9653 245834.4689 211572.4577 197997.7276 208551.332 226001.2317 155565.369 1.257640032 1.604754329 2.201491347 1.194963676 1.580264749 1.360022857 1.27276224 1.34060256 1.45277341 1 17.24716141 -5.920194131 1.330006042 1.300531109 1.640436946 0.213327556 0.274262439 0.700249429 2.584057519 0.114752876 0.139449818 1.20E-06 5.920194131 0.339905837 RT(ph)SSEDNLYLAVLR ddPTM_HeLa_A486_30min_R1 4 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.333)S(0.333)S(0.333)EDNLYLAVLR;RT(0.333)S(0.333)S(0.333)EDNLYLAVLR;RT(0.333)S(0.333)S(0.333)EDNLYLAVLR;RT(0.601)S(0.273)S(0.127)EDNLYLAVLR ;;; 205.78 4.74E-22 1370520000 213741 231180 255884 96640 350627 201649 257453 274109 188620 228776 TRUE FALSE FALSE 198758.8597 212860.4549 354969.1376 224982.8039 306648.0922 176771.5966 193035.5363 211700.3645 204969.7335 171489.0005 1.159018124 1.241248443 2.069923648 1.311937228 1.788150209 1.030804285 1.125643836 1.234483633 1.195235454 1 17.38775652 -6.277767963 24.79397807 1.132414302 1.51855236 0.370123367 0.258421006 869.738339 1320641.671 0.09193257 0.081315092 5.28E-07 6.277767963 0.386138058 RT(ph)SSEELRDATSLLAAGEGGLLDEVEPLRPDELER ddPTM_HeLa_A485_30min_R1 2 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 RT(0.292)S(0.292)S(0.292)EELRDAT(0.062)S(0.062)LLAAGEGGLLDEVEPLRPDELER;RT(0.2)S(0.2)S(0.2)EELRDAT(0.2)S(0.2)LLAAGEGGLLDEVEPLRPDELER ; 126.67 1.41E-06 34168700 6643.9 9559.4 11884.6 11952.8 15712.2 15010.3 18145.4 20314.3 11316.9 13226.6 TRUE FALSE FALSE 8121.812634 10677.28867 16281.2081 12605.7512 14147.8382 15796.2161 14268.48706 15332.18607 13588.09803 9929.452038 0.817951746 1.075314996 1.639688478 1.269531405 1.424835746 1.590844695 1.436986351 1.544112003 1.368464037 1 13.27749839 -4.566244775 4.854124674 1.430842425 0.86938754 0.548499688 0.173871597 0.11135757 5.876908112 0.041496211 0.124829679 2.71E-05 4.566244775 -0.561454885 RT(ph)SSEQAVALPR ddPTM_HeLa_A485_30min_R1 1 RTSSEQAVALPR 12 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RT(0.628)S(0.364)S(0.008)EQAVALPR 117 0.00019365 672980000 61804 163050 217050 65796 130900 128160 100130 114330 143810 72839 TRUE FALSE FALSE 75552.08658 182117.2792 297345.8272 69390.26888 117867.1364 134870.2594 78736.40751 86290.38824 172671.3479 54681.5778 1.381673493 3.330505199 5.437769705 1.268988052 2.155518204 2.466466127 1.439907382 1.578052275 3.157760892 1 15.73876725 -5.331614294 24.9999992 1.910000707 3.378155311 0.291166669 1.082925061 203.1840502 72384.08251 0.305322351 0.452866249 4.66E-06 5.331614294 1.468154604 RT(ph)SSEQAVALPR ddPTM_HeLa_A486_30min_R1 1 RTSSEQAVALPR 12 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RT(0.497)S(0.497)S(0.007)EQAVALPR 128.9 0.00011988 0 63159 68169 75412 27031 92173 74046 79909 72732 66707 75874 TRUE FALSE FALSE 58731.88025 62767.04017 104613.546 62929.53407 80611.80286 64910.95736 59914.92301 56172.51133 72489.21647 56874.65654 1.03265468 1.103602975 1.839370158 1.106460028 1.417358939 1.14129845 1.053455557 0.987654515 1.274543371 1 15.79549831 -6.443741301 5.485240499 1.079999518 1.307530023 0.180257382 0.224980351 0.398601441 20.61031826 0.081772339 0.071086541 3.60E-07 6.443741301 0.227530505 RT(ph)SSLDTITGPYLTGQWPR ddPTM_HeLa_A485_30min_R1 4 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RT(0.333)S(0.333)S(0.333)LDTITGPYLTGQWPR;RT(0.333)S(0.333)S(0.333)LDT(0.001)ITGPYLTGQWPR;RT(0.333)S(0.333)S(0.333)LDT(0.001)ITGPYLTGQWPR;RT(0.333)S(0.333)S(0.333)LDTITGPYLTGQWPR ;;; 244.67 7.36E-46 1935970000 164999 286462 271351 178505 374150 257518 324557 373160 249159 276921 TRUE FALSE FALSE 201702.4583 319961.239 371735.0268 188256.2762 336898.3123 271001.2443 255212.7456 281641.9249 299162.9259 207889.6911 0.970237905 1.539091416 1.788135933 0.905558497 1.62056286 1.303581928 1.227635407 1.354766191 1.439046469 1 17.66545869 -10.69208078 2.480072977 0.938252151 1.358387712 0.140758617 0.258535596 42682498.7 32401583.26 16471192.3 0.066194173 2.03E-11 10.69208078 0.420135561 RT(ph)SSLDTITGPYLTGQWPR ddPTM_HeLa_A486_30min_R1 3 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RT(0.331)S(0.331)S(0.331)LDT(0.007)ITGPYLTGQWPR;RT(0.333)S(0.333)S(0.333)LDTITGPYLTGQWPR;RT(0.333)S(0.333)S(0.333)LDTITGPYLTGQWPR ;; 199.85 1.54E-25 937300000 101180 106031 91363 46108 145559 89980 110596 127788 77890 107118 TRUE FALSE FALSE 94087.80449 97628.7174 126741.2004 107341.7542 127301.6329 78879.18245 82923.71103 98693.46199 84641.56791 80294.95558 1.171777278 1.2158761 1.578445364 1.336843061 1.585425037 0.982367845 1.032738737 1.229136516 1.054133069 1 16.29302173 -6.275594193 24.99946015 1.072312726 1.377570287 0.56564134 0.139110905 660.4102809 1166377.175 0.050739532 0.044959312 5.30E-07 6.275594193 0.305257561 RT(ph)SSLDTLAAPYLAGHWPR ddPTM_HeLa_A485_30min_R1 2 RTSSLDTLAAPYLAGHWPR 19 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 RT(0.329)S(0.329)S(0.329)LDT(0.014)LAAPYLAGHWPR;RT(0.333)S(0.333)S(0.333)LDT(0.001)LAAPYLAGHWPR ; 237.32 1.43E-45 885340000 414250 563740 607450 416260 688080 651890 761310 836290 487870 628660 TRUE FALSE FALSE 506398.4834 629664.4891 832171.0331 438999.2298 619572.3392 686021.9524 598649.8992 631188.5662 585781.034 471946.6316 1.072999465 1.334185789 1.763273594 0.930188289 1.312801698 1.453600696 1.268469482 1.337415131 1.241201854 1 18.8482642 -8.166324271 3.010534635 1.000041363 1.315836205 0.165711713 0.207386176 1.36843347 21.07475662 0.196842124 0.052504499 6.82E-09 8.166324271 0.315794842 RT(ph)SSLDTLAAPYLAGHWPR ddPTM_HeLa_A486_30min_R1 3 RTSSLDTLAAPYLAGHWPR 19 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 RT(0.328)S(0.328)S(0.328)LDT(0.015)LAAPYLAGHWPR;RT(0.5)S(0.25)S(0.25)LDT(0.001)LAAPYLAGHWPR;RT(0.323)S(0.323)S(0.323)LDT(0.032)LAAPYLAGHWPR ;; 234.8 1.63E-45 1116710000 390855 393517 417215 132427 565170 365578 486190 518080 360044 452739 TRUE FALSE FALSE 363458.0829 362333.2798 578771.8214 308296.7485 494281.1086 320476.7033 364540.1196 400124.4936 391252.9038 339370.2076 1.070978167 1.067663783 1.705429082 0.90843787 1.456465823 0.944327746 1.074166534 1.179020682 1.152879349 1 18.37250039 -6.280848379 24.95928228 1.081523153 1.239358639 0.13403991 0.217213511 1885.779055 2425036.852 0.074488967 0.065791915 5.24E-07 6.280848379 0.157835486 RT(ph)STPVIMEGVQEETDTR ddPTM_HeLa_A485_30min_R1 2 RTSTPVIMEGVQEETDTR 18 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RT(0.446)S(0.446)T(0.109)PVIMEGVQEETDTR;RT(0.459)S(0.459)T(0.082)PVIMEGVQEETDTR ; 143.9 4.67E-08 418350000 102432 124419 136009 94314 151959 116079 123042 128588 114735 95586 TRUE FALSE FALSE 125217.645 138968.7197 186324.3889 99466.135 136829.4284 122156.7169 96753.07154 97051.59138 137761.2621 71758.16933 1.744994977 1.936625767 2.596559955 1.386129774 1.906813255 1.702338815 1.348321347 1.352481429 1.919799005 1 16.13085546 -6.155572458 0.854723839 1.409630841 2.025822566 0.327434435 0.346463695 0.749864801 1.19728941 0.211543724 0.22165547 6.99E-07 6.155572458 0.616191725 RT(ph)STPVIMEGVQEETDTR ddPTM_HeLa_A486_30min_R1 2 RTSTPVIMEGVQEETDTR 18 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RT(0.333)S(0.333)T(0.333)PVIMEGVQEETDTR;RT(0.333)S(0.333)T(0.333)PVIMEGVQEETDTR ; 165.85 3.60E-12 280760000 194209 203353 182418 55102 237500 156518 190198 217340 175019 177770 TRUE FALSE FALSE 180595.952 187238.5677 253055.1349 128280.2407 207710.5354 137208.4005 142608.4487 167856.4265 190189.7878 133255.2349 1.35526347 1.405112285 1.899025844 0.962665675 1.55874203 1.029666119 1.070190216 1.25966103 1.427259409 1 17.02383268 -5.274583514 24.99959245 1.201783879 1.53833174 0.354992734 0.225345413 888.4991624 1689886.274 0.062428819 0.093231021 5.31E-06 5.274583514 0.336547861 RT(ph)TLCGTLDYLPPEMIEGR ddPTM_HeLa_A485_30min_R1 2 RTTLCGTLDYLPPEMIEGR 19 1 A3KFJ0;O14965 A3KFJ0 AURKA Aurora kinase A 1 0 RT(0.461)T(0.461)LCGT(0.078)LDYLPPEMIEGR;RT(0.5)T(0.5)LCGTLDYLPPEMIEGR ; 156.7 4.30E-09 185823000 112522 125825 145666 105363 209020 122679 165327 171574 126810 141169 TRUE FALSE FALSE 137552.1307 140539.1392 199553.9151 111118.7139 188209.2349 129102.2827 130003.5359 129495.2075 152259.6038 105978.1663 1.297928955 1.326114086 1.882971955 1.048505723 1.775924621 1.218196985 1.226701125 1.221904586 1.436707287 1 16.69340755 RT(ph)TLCGTLDYLPPEMIEGR ddPTM_HeLa_A486_30min_R1 3 RTTLCGTLDYLPPEMIEGR 19 1 A3KFJ0;O14965 A3KFJ0 AURKA Aurora kinase A 1 0 RT(0.44)T(0.44)LCGT(0.12)LDY(0.001)LPPEMIEGR;RT(0.492)T(0.492)LCGT(0.017)LDYLPPEMIEGR;RT(0.473)T(0.473)LCGT(0.054)LDYLPPEMIEGR ;; 103.63 9.30E-05 262241000 175643 240796 249497 80444.4 293983 197723 250840 251389 182117 187935 TRUE FALSE FALSE 163331.3327 221714.448 346108.9202 187278.6286 257108.9109 173329.9466 188077.1789 194153.2125 197903.0482 140874.8527 1.1594073 1.573839785 2.45685382 1.329397156 1.825087344 1.230382451 1.335065664 1.378196383 1.404814588 1 17.10405458 -6.267820209 24.44958191 1.297414939 1.688547057 0.255622133 0.338156885 583.1740994 2234555.108 0.118935057 0.107468599 5.40E-07 6.267820209 0.391132119 RT(ph)TTPPDSGVLFEGLGISTRPR ddPTM_HeLa_A486_30min_R1 1 RTTTPPDSGVLFEGLGISTRPR 22 2 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 RT(0.436)T(0.436)T(0.128)PPDSGVLFEGLGISTRPR 97.877 0.0008318 160620000 31067 24621 22242 12453 45919 30549 32203 37194 21802 26789 TRUE FALSE FALSE 28889.36373 22669.94229 30854.69806 28991.21334 40159.41084 26780.17498 24145.46879 28725.73814 23691.81491 20080.86003 1.438651715 1.128932837 1.536522739 1.44372369 1.999885004 1.333616934 1.202412086 1.430503379 1.179820729 1 14.29353344 -7.854561483 0.883719176 1.005587973 1.470697934 0.314417544 0.21889284 0.761116651 1.32571109 0.221392457 0.080054536 1.40E-08 7.854561483 0.465109961 RT(ph)YSDEANQMR ddPTM_HeLa_A485_30min_R1 1 RTYSDEANQMR 11 1 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 RT(0.536)YS(0.464)DEANQMR 95.264 0.0017811 112880000 83591 115370 114610 67871 120610 113750 115550 143910 129680 72455 TRUE FALSE FALSE 102185.5296 128861.5179 157009.0083 71578.62087 108601.6449 119705.7741 90861.79854 108615.8469 155705.5865 54393.30194 1.87864178 2.369069597 2.886550416 1.315945499 1.9965996 2.200744758 1.670459327 1.996860698 2.862587506 1 15.73114139 -5.254474986 24.99244389 1.916427355 2.377185429 0.162909421 0.525160451 1125.106425 4037550.511 0.140433089 0.236483958 5.57E-06 5.254474986 0.460758074 RTAFYNEDDS(ph)EEEQR ddPTM_HeLa_A485_30min_R1 2 RTAFYNEDDSEEEQR 15 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 RTAFYNEDDS(1)EEEQR;RTAFYNEDDS(1)EEEQR ; 92.307 0.00047957 676110000 363610 564960 559359 361540 609270 538560 556020 643470 430560 501820 TRUE FALSE FALSE 444493.7901 631027.1575 766289.171 381290.0147 548608.9395 566758.1688 437221.7847 485657.9736 516969.4427 376725.5093 1.179887688 1.675031666 2.034078267 1.012116263 1.456256415 1.504432683 1.160584494 1.289156061 1.372270871 1 18.5231542 -7.570467026 0.267434395 0.950628752 1.614707065 0.215761693 0.267297585 2.871299629 0.815213947 0.727253075 0.631768927 2.69E-08 7.570467026 0.664078314 RTAFYNEDDS(ph)EEEQR ddPTM_HeLa_A486_30min_R1 3 RTAFYNEDDSEEEQR 15 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 RTAFYNEDDS(1)EEEQR;RTAFYNEDDS(1)EEEQR;RTAFYNEDDS(1)EEEQR ;; 156.92 9.82E-09 1110070000 394370 518180 402920 122665 578710 434390 476580 493970 415880 429730 TRUE FALSE FALSE 366726.6995 477117.5296 558941.4146 285570.3191 506122.7955 380799.3784 357334.6433 381503.8143 451928.8133 322122.8109 1.138468581 1.481166541 1.735181104 0.886526224 1.571210664 1.18215589 1.109311825 1.184342746 1.402970538 1 18.2972513 -5.981551274 0.966734047 1.184407385 1.398252221 0.100908587 0.241282763 1.321509608 2.677442994 0.123978913 0.151742994 1.04E-06 5.981551274 0.213844836 RTAS(ph)PPPPPKR ddPTM_HeLa_A485_30min_R1 6 RTASPPPPPKR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RT(0.04)AS(0.96)PPPPPKR;RT(0.029)AS(0.971)PPPPPKR;RT(0.14)AS(0.86)PPPPPKR;RT(0.086)AS(0.914)PPPPPKR;RT(0.146)AS(0.854)PPPPPKR;RT(0.004)AS(0.996)PPPPPKR ;;;;; 97.86 0.00075687 2855450000 990915 1284140 1061742 1047581 1423400 1288590 1554120 1721920 1124534 1458900 TRUE FALSE FALSE 1211340.623 1434309.002 1454524.549 1104807.697 1281681.298 1356058.58 1222069.566 1299616.42 1350217.659 1095223.079 1.10602182 1.309604436 1.328062361 1.008751293 1.170246795 1.238157418 1.115817946 1.186622566 1.23282433 1 20.06279332 -11.03905854 2.455256493 0.763591442 1.189576169 0.277200541 0.091278334 8367199.388 3394335 11113512.44 0.023239314 9.14E-12 11.03905854 0.425984726 RTAS(ph)PPPPPKR ddPTM_HeLa_A486_30min_R1 4 RTASPPPPPKR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RT(0.139)AS(0.861)PPPPPKR;RT(0.107)AS(0.893)PPPPPKR;RT(0.024)AS(0.976)PPPPPKR;RT(0.028)AS(0.972)PPPPPKR ;;; 88.552 0.0013398 2527810000 1432740 1463450 1005470 553565 1547020 1339470 1460070 1517930 1013980 1475250 TRUE FALSE FALSE 1332312.325 1347480.892 1394814.911 1288727.296 1352978.326 1174219.81 1094745.043 1172330.475 1101872.603 1105837.798 1.204799047 1.218515857 1.261319621 1.165385465 1.223487142 1.06183729 0.989968913 1.06012878 0.996414307 1 20.07670836 -6.34842534 3.466629877 1.01716753 1.215777748 0.917761327 0.02912587 0.064930884 1.490865769 0.01053524 0.009267927 4.48E-07 6.34842534 0.198610219 RTCSEQSL ddPTM_HeLa_A485_30min_R1 1 RTCSEQSL 8 1 O00187-2 O00187-2 0 0 8.7725 0.037788 44350000 77582 81007 58888 78659 104570 94863 118420 122550 69240 104510 FALSE FALSE TRUE 94839.84825 90480.06398 80673.12173 82955.94199 94158.64363 99829.87999 93118.5996 92494.42035 83135.83289 78457.58036 1.208804144 1.153235463 1.028238717 1.057334952 1.200121686 1.272405796 1.186865554 1.178909927 1.059627795 1 16.25962522 -7.929711504 3.849831898 1.001192631 1.158319746 0.386789951 0.067749856 0.23638222 6.763678034 0.07416392 0.019589138 1.18E-08 7.929711504 0.157127114 RTDALT(ph)SS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RT(0.014)DALT(0.985)S(0.025)S(0.976)PGR 121.48 0.010217 629740000 559150 859500 755910 586990 772850 635290 605460 649570 762060 736690 TRUE FALSE FALSE 683530.9885 960011.0483 1035552.565 619055.7774 695902.3404 668552.8021 476098.5248 490261.939 914998.452 553046.7408 1.235937106 1.735858794 1.872450353 1.119355258 1.258306557 1.208854067 0.860864896 0.886474692 1.654468573 1 19.07704189 -5.279784387 24.16376774 1.132477962 1.62685974 0.411843445 0.259069553 482.8912034 636055.9533 0.073433089 0.109178861 5.25E-06 5.279784387 0.494381779 RTDALT(ph)SSPGRDLPPFEDESEGLLGTEGPLEEEEDGEELIGDGMER ddPTM_HeLa_A485_30min_R1 1 RTDALTSSPGRDLPPFEDESEGLLGTEGPLEEEEDGEELIGDGMER 46 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RT(0.193)DALT(0.269)S(0.269)S(0.269)PGRDLPPFEDES(0.001)EGLLGTEGPLEEEEDGEELIGDGMER 212.08 5.23E-32 29871000 6444.3 10523 14179 8393.9 18058 11953 17521 22359 12303 10954 TRUE FALSE FALSE 7877.812302 11753.57331 19424.40214 8852.437503 16260.08211 12578.8406 13777.49522 16875.42019 14772.09925 8223.369393 0.957978649 1.42928923 2.362097725 1.076497611 1.97730168 1.529645574 1.675407556 2.052129655 1.796356036 1 13.00551392 -4.420983155 4.34387068 1.714340841 0.995587248 0.231070665 0.397036527 0.2905504 8.716619633 0.092902347 0.424833738 3.79E-05 4.420983155 -0.718753593 RTDALTS(ph)S(ph)PGR ddPTM_HeLa_A486_30min_R1 2 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 2 0 RT(0.007)DALT(0.087)S(0.908)S(0.998)PGR;RT(0.01)DALT(0.405)S(0.586)S(0.999)PGR ; 113.69 0.00019872 462540000 1179830 1277940 955450 303010 1080830 1033480 995600 976350 1037930 1223920 TRUE FALSE FALSE 1097130.01 1176671.38 1325425.828 705422.5933 945262.2231 905979.7453 746490.3496 754056.4186 1127898.608 917442.4656 1.195857016 1.282556045 1.444696401 0.768901179 1.030323163 0.987505788 0.813664483 0.821911397 1.229394377 1 19.80725816 -5.258214532 24.99979009 0.942021082 1.305188447 0.586788569 0.137335887 192.5113836 1492387.743 0.037328605 0.061345787 5.52E-06 5.258214532 0.363167365 RTDALTS(ph)SPGR ddPTM_HeLa_A485_30min_R1 6 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RTDALT(0.033)S(0.858)S(0.109)PGR;RTDALT(0.017)S(0.492)S(0.492)PGR;RTDALT(0.144)S(0.44)S(0.416)PGR;RTDALT(0.143)S(0.429)S(0.429)PGR;RTDALT(0.107)S(0.625)S(0.268)PGR;RTDALT(0.087)S(0.567)S(0.346)PGR ;;;;; 194.83 6.90E-11 84640450000 9037480 12997030 11864180 8958960 10873260 10179920 10787970 10472800 10012060 11071190 TRUE FALSE FALSE 11047836.25 14516919.6 16253233.89 9448365.3 9790680.056 10712924.87 8483032.08 7904329.379 12021388.61 8311346.083 1.329247529 1.746638806 1.955547721 1.136803257 1.177989697 1.288951845 1.020656822 0.951028786 1.446382871 1 22.98665072 -5.280270564 24.56609006 1.146002743 1.68409408 0.602793273 0.197567394 412.583736 538232.3452 0.055559552 0.08257693 5.24E-06 5.280270564 0.538091337 RTDALTS(ph)SPGR ddPTM_HeLa_A486_30min_R1 7 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RTDALT(0.007)S(0.497)S(0.497)PGR;RTDALT(0.007)S(0.815)S(0.179)PGR;RTDALT(0.068)S(0.693)S(0.239)PGR;RTDALT(0.261)S(0.659)S(0.08)PGR;RTDALT(0.008)S(0.861)S(0.131)PGR;RTDALT(0.055)S(0.472)S(0.472)PGR;RTDALT(0.09)S(0.747)S(0.163)PGR ;;;;;; 214.58 1.85E-15 42202850000 17314170 19313820 15105620 4507796 17310190 15967440 15762850 15896700 15710310 18486380 TRUE FALSE FALSE 16100536.09 17783322.56 20954920.61 10494376.9 15138984.56 13997539.6 11818818.21 12277368.43 17072092.32 13857270.12 1.161883686 1.28332077 1.512196877 0.757319213 1.092494007 1.010122447 0.852896574 0.885987523 1.231995348 1 23.72413974 -5.259587213 24.99999973 0.972247746 1.315552472 0.53461886 0.146742818 127.5547907 1721684.007 0.040023748 0.065008807 5.50E-06 5.259587213 0.343304726 RTDALTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 4 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RTDALT(0.004)S(0.28)S(0.716)PGR;RTDALT(0.009)S(0.022)S(0.969)PGR;RTDALT(0.024)S(0.073)S(0.903)PGR;RTDALT(0.002)S(0.046)S(0.952)PGR ;;; 187.77 3.01E-10 24979400000 8437110 10936440 10338120 7708140 9674140 9117060 9258760 9113250 8431620 10012470 TRUE FALSE FALSE 10313916.01 12215361.52 14162620.79 8129216.17 8710948.654 9594415.164 7280550.289 6878211.148 10123768.79 7516545.495 1.372161722 1.625129726 1.884192785 1.081509608 1.158903204 1.276439446 0.968603236 0.915076102 1.346864567 1 22.84163834 -5.278145666 24.94016093 1.106717072 1.626958238 0.663730756 0.169740923 450.8511976 673057.0715 0.048405981 0.072021749 5.27E-06 5.278145666 0.520241166 RTDALTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RTDALT(0.036)S(0.261)S(0.703)PGR;RTDALT(0.077)S(0.391)S(0.532)PGR ; 102.26 0.00063281 6583840000 2436800 2721980 2008210 632767 2440490 2286070 2072660 2212290 2121220 2576800 TRUE FALSE FALSE 2265992.904 2506280.392 2785842.694 1473113.554 2134380.988 2004037.926 1554058.546 1708599.861 2305089.058 1931552.508 1.173145899 1.297547119 1.442281627 0.762657783 1.105008007 1.037527025 0.804564483 0.884573344 1.193386692 1 20.88132947 -5.254640065 24.99960527 0.966451035 1.303647107 0.556187178 0.136969132 401.2382516 1475262.138 0.037393479 0.06296898 5.56E-06 5.254640065 0.337196073 RTDALTSSPGR ddPTM_HeLa_A485_30min_R1 2 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 0 0 ; ; 136.93 4.58E-05 0 73861 144369 186653 56271 124903 117546 89249 98323 129812 71564 FALSE FALSE TRUE 90291.12463 161251.6987 255703.712 59344.94224 112467.2188 123700.5268 70180.22205 74209.13009 155864.0777 53724.41184 1.680634958 3.001460476 4.759544185 1.104617812 2.093409959 2.302501276 1.306300426 1.381292555 2.901177926 1 15.71329016 -5.292063835 24.9791297 1.764641846 3.132639141 0.350217428 0.885369146 748.6688116 610657.218 0.249151879 0.369598683 5.10E-06 5.292063835 1.367997295 RTDEAAFQK ddPTM_HeLa_A485_30min_R1 2 RTDEAAFQK 9 1 P26447 P26447 S100A4 Protein S100-A4 0 0 ; ; 79.201 0.033327 36120000 33289 39375 40490 33397 49035 42049 55749 58784 37059 57821 FALSE FALSE TRUE 40694.0232 43979.56373 55468.93593 35221.39354 44152.90323 44250.62062 43837.77072 44367.13183 44496.40137 43407.28882 0.937492857 1.013183844 1.277871469 0.811416573 1.017177171 1.019428345 1.009917272 1.022112485 1.025090546 1 15.4056497 -5.274536701 24.99900474 0.99100262 1.069882862 0.142316969 0.100156867 1712.364035 3268402.761 0.02831471 0.042260049 5.31E-06 5.274536701 0.078880241 RTDIFGVEETAIGK(ac)K ddPTM_HeLa_A485_30min_R1 2 RTDIFGVEETAIGKK 15 2 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 1 ; RTDIFGVEETAIGK(1)K;RTDIFGVEETAIGK(1)K 149.57 6.12E-06 103470000 112930 138818 128544 116303 179724 188741 269170 364250 249570 355990 FALSE TRUE FALSE 138050.8889 155051.5575 176097.7748 122656.3384 161830.0475 198623.1869 211659.6306 274917.1164 299656.4098 267248.2445 0.51656425 0.580178021 0.658929585 0.458960315 0.605542041 0.743216058 0.791996336 1.028695687 1.121266148 1 18.02782095 -6.910409486 1.248863707 1.078366551 0.562597572 0.912556975 0.064584509 0.126208322 0.38224378 0.046514528 0.023347033 1.23E-07 6.910409486 -0.515768979 RTDIFGVEETAIGK(ac)K ddPTM_HeLa_A486_30min_R1 1 RTDIFGVEETAIGKK 15 2 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 1 RTDIFGVEETAIGK(1)K 129.32 0.00017495 64324000 91395 110180 89641 62867 127000 127320 148700 159570 122900 187330 FALSE TRUE FALSE 84988.68246 101448.9355 124352.3959 146357.5531 111070.4758 111612.5529 111493.6872 123239.3944 133553.071 140421.3487 0.605240466 0.722460911 0.885566169 1.04227423 0.790979981 0.794840343 0.79399385 0.877640014 0.95108808 1 17.09940276 -4.584835254 3.054622819 0.882556484 0.618119703 0.564060765 0.082841646 0.201611377 3.605820786 0.02307504 0.089063708 2.60E-05 4.584835254 -0.264436781 RTDLCDHALHISHDEL ddPTM_HeLa_A485_30min_R1 2 RTDLCDHALHISHDEL 16 1 Q9Y2B0;H0YI18 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 0 ; ; 160.78 3.69E-12 601840000 79336 154422 176093 31604 162860 104218 124558 150694 126164 64976 FALSE FALSE TRUE 96984.01949 172480.3096 241237.1285 33330.44649 146645.0866 109674.6933 97945.16575 113736.0602 151483.9576 48778.67899 1.988246125 3.535977463 4.945544519 0.68329949 3.006335751 2.248414586 2.007950354 2.331675694 3.105536285 1 15.57396307 -5.260876469 24.99999945 2.156000571 3.494528079 0.307767444 0.978123158 65.84299746 2924164.971 0.265159678 0.42603158 5.48E-06 5.260876469 1.338527508 RTDLCDHALHISHDEL ddPTM_HeLa_A486_30min_R1 1 RTDLCDHALHISHDEL 16 1 Q9Y2B0;H0YI18 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 0 116.96 4.93E-05 271310000 41805 43581 57650 1710.5 67290 24502 28762 35603 42328 13281 FALSE FALSE TRUE 38874.68538 40127.48284 79973.62392 3982.130444 58849.86075 21479.19236 21565.44339 27496.97411 45997.02512 9955.351155 3.904903481 4.030745095 8.033229835 0.399998994 5.911379702 2.157552458 2.166216244 2.762029554 4.62033176 1 13.28125649 -5.266920418 24.99619637 2.877071122 5.193737993 0.292052547 1.844394021 613.6568053 2798573.903 0.498974808 0.764523988 5.41E-06 5.266920418 2.316666871 RTEARS(ph)S(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_A485_30min_R1 1 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 3 0 RT(0.128)EARS(0.936)S(0.936)DEENGPPS(0.813)S(0.187)PDLDR 154.45 7.74E-10 1185600000 343150 431930 456920 366940 597230 433290 591130 626830 453480 522630 TRUE FALSE FALSE 419482.5336 482440.4562 625953.722 386985.0031 537767.6842 455976.3944 464830.2464 473098.9597 544489.2764 392347.9593 1.069159463 1.229623972 1.595404557 0.986331122 1.370639687 1.162173483 1.184739809 1.205814758 1.387771399 1 18.58177417 RTEARS(ph)S(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_A486_30min_R1 1 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 3 0 RT(0.593)EARS(0.734)S(0.672)DEENGPPS(0.579)S(0.421)PDLDR 69.674 0.0063693 1125000000 375560 390430 414770 168130 580870 431210 468270 515640 396210 413070 TRUE FALSE FALSE 349235.1834 359490.9049 575380.0519 391415.1368 508011.8682 378011.6944 351103.8931 398240.0283 430553.8018 309634.5834 1.127894629 1.161016644 1.858255127 1.264119571 1.640681938 1.220831634 1.133929839 1.286161333 1.390522328 1 18.24020709 -6.43773939 24.99968705 1.219471293 1.415041073 0.169279849 0.225011622 164.9766566 48439.74957 0.080016553 0.070567953 3.65E-07 6.43773939 0.19556978 RTEARS(ph)S(ph)DEENGPPSS(ph)PDLDR ddPTM_HeLa_A485_30min_R1 1 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 3 0 RT(0.088)EARS(0.934)S(0.978)DEENGPPS(0.016)S(0.984)PDLDR 156.49 4.86E-10 1323600000 429390 494480 439880 365680 653630 518850 571220 684250 538400 529100 TRUE FALSE FALSE 524906.3241 552305.1346 602609.9169 385656.1724 588552.3022 546016.1837 449174.1806 516436.6146 646451.9415 397205.1074 1.321499433 1.390478431 1.517125298 0.970924505 1.481733974 1.374645425 1.130836871 1.300176169 1.627501584 1 18.59952465 -10.09751351 4.355941242 0.999961641 1.338549581 0.251137855 0.178868618 59128163.86 2.22564617 23525.22477 0.042325841 7.99E-11 10.09751351 0.33858794 RTEARS(ph)S(ph)DEENGPPSS(ph)PDLDR ddPTM_HeLa_A486_30min_R1 1 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 3 0 RT(0.244)EARS(0.806)S(0.95)DEENGPPS(0.076)S(0.924)PDLDR 168.98 1.12E-13 1425200000 561130 609500 549920 232020 759190 589280 649230 724610 491330 647580 TRUE FALSE FALSE 521797.6847 561201.0002 762863.7514 540154.2856 663965.311 516580.625 486785.7871 559632.1211 533918.88 485421.753 1.074936757 1.156110118 1.571548343 1.112752534 1.367811201 1.064189278 1.002809998 1.152878127 1.099907198 1 18.88887924 -6.283068384 23.87648455 1.069690078 1.260549321 0.324583186 0.138788404 580.2911742 640586.6196 0.049044162 0.043300586 5.21E-07 6.283068384 0.190859243 RTEEPDRDER ddPTM_HeLa_A485_30min_R1 1 RTEEPDRDER 10 2 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 0 0 139.76 1.45E-05 205530000 27129 42734 46314 25339 44288 46825 41206 53117 41429 43710 FALSE FALSE TRUE 33163.75246 47731.36956 63447.47589 26723.20541 39878.53122 49276.68459 32402.00148 40089.97247 49743.42029 32813.90142 1.010661671 1.454608184 1.933554778 0.814386716 1.215293808 1.501701488 0.987447395 1.221737457 1.515925207 1 15.00201951 -5.273099248 24.99976834 1.195652378 1.465108246 0.167319008 0.291611708 1408.650097 3020264.877 0.082644882 0.123716036 5.33E-06 5.273099248 0.269455868 RTEEPDRDER ddPTM_HeLa_A486_30min_R1 2 RTEEPDRDER 10 2 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 0 0 ; ; 158.05 1.01E-06 230370000 110438 104672 115624 42996 139989 110375 105524 119159 99162 111563 FALSE FALSE TRUE 102696.8665 96377.40951 160396.7093 100096.8609 122430.2743 96758.05471 79120.77908 92029.09692 107757.442 83626.89865 1.228036292 1.152469015 1.918003799 1.19694575 1.464005915 1.157020723 0.946116386 1.100472437 1.288550021 1 16.35167944 -6.374909295 4.742616605 1.087580747 1.396310806 0.315497551 0.217631167 0.293234631 10.27352082 0.079233564 0.069333837 4.22E-07 6.374909295 0.308730059 RTEGYAAFQEDS(ph)S(ph)GDEAESPSK ddPTM_HeLa_A486_30min_R1 1 RTEGYAAFQEDSSGDEAESPSK 22 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 RTEGYAAFQEDS(0.999)S(0.992)GDEAES(0.009)PSK 106.17 8.21E-05 149860000 154670 146880 81027 71722 156560 174740 218980 188730 120100 198200 TRUE FALSE FALSE 143828.4317 135240.6939 112402.8244 166972.4406 136922.7849 153182.3554 164188.8879 145760.2989 130510.3647 148569.4299 0.968089006 0.910286147 0.756567649 1.123868084 0.921608066 1.031048955 1.105132381 0.981092133 0.878446964 1 17.18077777 -5.263618352 24.99963857 1.006769633 0.88151146 0.320636222 0.085050428 238.3453172 2734579.723 0.023837916 0.0374423 5.45E-06 5.263618352 -0.125258173 RTEITIVKPQESAHR ddPTM_HeLa_A485_30min_R1 1 RTEITIVKPQESAHR 15 2 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8-7 9-Sep Septin-9 0 0 68.944 0.017035 4755200 6987.1 17714 20779 5023.4 19504 11846 11963 14674 14437 8918.2 FALSE FALSE TRUE 8541.35629 19785.49821 28466.01679 5297.815622 17562.11328 12466.23824 9407.007321 11075.17849 17334.37348 6695.056867 1.275770536 2.955239754 4.251796116 0.791302558 2.623146244 1.862006326 1.405067576 1.654232176 2.589130133 1 12.70888059 -5.276496668 24.98904044 1.76329621 2.840366098 0.258141603 0.869022133 1106.133546 1835734.135 0.242716941 0.361604449 5.29E-06 5.276496668 1.077069888 RTEKPPES(ph)DDEEMKEAAGSLLHLAGIR ddPTM_HeLa_A486_30min_R1 1 RTEKPPESDDEEMKEAAGSLLHLAGIR 27 3 O00409-2;O00409 O00409-2 FOXN3 Forkhead box protein N3 1 0 RT(0.051)EKPPES(0.949)DDEEMKEAAGSLLHLAGIR 97.804 0.0018832 53777000 39142 28643 14621 17400 27025 35200 57017 45574 21103 60517 TRUE FALSE FALSE 36398.34793 26373.22436 20282.64276 40508.07935 23635.2725 30857.38189 42750.74354 35197.79507 22932.22503 45363.1493 0.802377006 0.581379926 0.447117166 0.892973261 0.521023625 0.680230151 0.942411279 0.775911629 0.505525418 1 15.46923318 -6.541986192 24.64329563 0.790721343 0.64286683 0.157875524 0.171261349 414.7552148 534913.5069 0.064220174 0.049752256 2.87E-07 6.541986192 -0.147854513 RTELFIAAEGIHTGQFVYCGK ddPTM_HeLa_A486_30min_R1 1 RTELFIAAEGIHTGQFVYCGK 21 1 P62917;E9PKZ0;E9PKU4;G3V1A1 P62917 RPL8 60S ribosomal protein L8 0 0 35.174 0.035282 7410100 15563 15091 14014 4593.6 23817 18258 21748 20967 16606 19834 FALSE FALSE TRUE 14472.11407 13895.1342 19440.59611 10694.13295 20829.64978 16005.51359 16306.42037 16193.27181 18045.42145 14867.4373 0.973410129 0.934601836 1.307595634 0.719299011 1.401024894 1.076548249 1.096787566 1.08917707 1.21375467 1 13.85986837 RTES(ph)DSGLKK ddPTM_HeLa_A485_30min_R1 1 RTESDSGLKK 10 2 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 RT(0.176)ES(0.823)DS(0.002)GLKK 60.157 0.021026 104150000 155340 121130 72772 220090 129650 142810 223010 263030 138330 305850 TRUE FALSE FALSE 189894.8471 135295.0998 99693.3911 232112.9594 116741.5908 150287.3108 175362.0917 198521.4801 166091.5622 229607.2238 0.827042129 0.589245833 0.434191004 1.010913139 0.508440409 0.654540865 0.763748147 0.86461339 0.723372547 1 17.80880851 -8.170556529 0.48122929 1.009221197 0.654848238 0.260493734 0.159043704 1.762136911 0.945834274 0.211121075 0.092665783 6.75E-09 8.170556529 -0.354372959 RTES(ph)FHSYR ddPTM_HeLa_A485_30min_R1 1 RTESFHSYR 9 1 Q9Y597-3;Q9Y597-2;Q9Y597 Q9Y597-3 KCTD3 BTB/POZ domain-containing protein KCTD3 1 0 RT(0.008)ES(0.992)FHSYR 95.273 0.0015869 432520000 146930 176910 158940 146060 213290 166940 203310 201700 195010 215110 TRUE FALSE FALSE 179614.0716 197598.0856 217738.52 154038.888 192054.0987 175680.7203 159871.1576 152232.7587 234146.7183 161487.0358 1.112250718 1.223615782 1.348334366 0.953877735 1.189284934 1.087893647 0.989993759 0.942693375 1.449941273 1 17.30105882 -5.258778589 24.9958185 1.085454997 1.227621829 0.154901794 0.150214443 439.7915871 4131440.133 0.040367846 0.065923829 5.51E-06 5.258778589 0.142166832 RTES(ph)VPSDINNPVDR ddPTM_HeLa_A485_30min_R1 3 RTESVPSDINNPVDR 15 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 RT(0.285)ES(0.715)VPSDINNPVDR;RT(0.142)ES(0.858)VPSDINNPVDR;RT(0.111)ES(0.889)VPSDINNPVDR ;; 192.46 1.60E-18 3717390000 528650 756770 808180 593430 1006010 836140 994710 1016150 795010 822850 TRUE FALSE FALSE 646246.3687 845267.6685 1107159.413 625847.5783 905848.1121 879918.9975 782182.0825 766937.6192 954561.2147 617728.6384 1.046165466 1.368347873 1.792307082 1.013143214 1.466417543 1.424442616 1.266222794 1.241544542 1.54527596 1 19.23661369 -10.79130413 2.720752065 0.904129239 1.354824322 0.188678101 0.218596535 26668219.44 23064285.55 17087745.67 0.055333108 1.62E-11 10.79130413 0.450695083 RTES(ph)VPSDINNPVDR ddPTM_HeLa_A486_30min_R1 3 RTESVPSDINNPVDR 15 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 RT(0.118)ES(0.881)VPS(0.002)DINNPVDR;RT(0.004)ES(0.996)VPSDINNPVDR;RT(0.01)ES(0.99)VPSDINNPVDR ;; 174.04 1.07E-12 2436890000 754910 799570 716140 211644 968130 737470 724740 812790 659910 698830 TRUE FALSE FALSE 701994.7074 736209.1612 993448.5869 492717.9279 846698.1079 646488.4494 543402.3865 627735.4601 717111.5301 523838.4194 1.340097789 1.405412688 1.896479048 0.94059143 1.616334497 1.234137141 1.037347332 1.198337955 1.368955586 1 18.99876235 -6.170776053 1.08290398 1.160236057 1.470887268 0.213480965 0.247053738 0.815774873 2.011383983 0.126623916 0.124792673 6.75E-07 6.170776053 0.310651211 RTFS(ph)LTEVR ddPTM_HeLa_A485_30min_R1 1 RTFSLTEVR 9 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 RT(0.042)FS(0.956)LT(0.002)EVR 116.81 0.00036121 303140000 231940 312700 293650 180430 325550 256050 260050 286280 226090 213510 TRUE FALSE FALSE 283534.2528 349267.5449 402283.3548 190286.434 293137.0989 269456.3821 204488.1931 216069.3811 271464.1892 160285.8864 1.768928377 2.179028689 2.509786507 1.187168991 1.828839117 1.681098618 1.275771671 1.348024995 1.693625031 1 17.29028787 -5.797170411 0.260657451 1.034239921 2.472927593 0.43645548 0.330303969 3.979386676 0.459917601 0.553086906 1.838618809 1.60E-06 5.797170411 1.438687672 RTFS(ph)LTEVR ddPTM_HeLa_A486_30min_R1 3 RTFSLTEVR 9 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 RT(0.297)FS(0.702)LT(0.001)EVR;RT(0.001)FS(0.998)LT(0.001)EVR;RT(0.462)FS(0.537)LT(0.001)EVR ;; 137.4 9.76E-05 395690000 589300 500140 522700 165854 642510 465340 555810 561400 439530 517630 TRUE FALSE FALSE 547993.1131 460507.0849 725103.4384 386116.4938 561920.4046 407931.082 416740.4592 433581.4753 477628.8143 388012.0788 1.412309418 1.186836983 1.868765118 0.995114624 1.448203382 1.051336039 1.074039913 1.117443242 1.230963778 1 18.56574204 -5.851380032 1.31827431 1.106411373 1.428578853 0.289016425 0.217766681 0.567588915 2.067745754 0.08523253 0.110712334 1.41E-06 5.851380032 0.32216748 RTGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_HeLa_A485_30min_R1 1 RTGGPAYGPSSDVSTASETESEKR 24 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 RTGGPAYGPSSDVST(0.039)AS(0.958)ET(0.003)ESEKR 223.34 1.72E-38 650380000 269540 341440 262120 302470 320230 319460 406320 430180 261790 346910 TRUE FALSE FALSE 329498.2431 381368.4379 359089.0957 318993.1702 288346.7768 336186.4316 319506.4127 324677.6805 314328.8517 260431.7214 1.265200112 1.464370146 1.378822418 1.224862964 1.107187616 1.290881271 1.226833701 1.246690222 1.206953016 1 17.99054566 -12.26618438 0.046555674 4.77E-09 1.918916117 0.557277073 0.081383222 363.2590536 1.729558936 58.58672522 20.94164789 5.42E-13 12.26618438 1.918916112 RTGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_HeLa_A486_30min_R1 2 RTGGPAYGPSSDVSTASETESEKR 24 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 RTGGPAYGPSSDVST(0.011)AS(0.987)ET(0.002)ESEKR;RTGGPAYGPSSDVS(0.001)T(0.008)AS(0.99)ET(0.002)ESEKR ; 224.14 1.59E-38 1130720000 633720 609130 437770 260583 565080 594350 754650 652620 484560 918090 TRUE FALSE FALSE 589299.5005 560860.3204 607286.2679 606650.3931 494202.3972 521025.1399 565828.5881 504032.6726 526562.0509 688194.2882 0.856298157 0.814973809 0.882434333 0.881510358 0.718114645 0.757090183 0.82219309 0.732398803 0.765135747 1 19.39245639 -5.738069016 24.99997033 0.784823944 0.857361305 0.109981576 0.076851924 409.2251895 437758.2775 0.02135744 0.027555082 1.83E-06 5.738069016 0.072537361 RTGS(ph)NAAQYK ddPTM_HeLa_A485_30min_R1 2 RTGSNAAQYK 10 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 RT(0.002)GS(0.998)NAAQYK;RT(0.223)GS(0.777)NAAQYK ; 141.73 1.75E-05 422740000 441840 514960 382360 463640 737020 542440 741810 973300 503550 619640 TRUE FALSE FALSE 540125.7837 575180.0924 523810.8753 488967.4792 663639.701 570841.3196 583316.2335 734596.6489 604607.8662 465175.1516 1.161123465 1.23648069 1.126050851 1.05114703 1.426644778 1.227153509 1.253971179 1.579182909 1.299742396 1 18.82741451 -5.759881468 24.99976717 1.321019593 1.149066981 0.201483016 0.145781431 60.70738575 974153.8596 0.043188635 0.052803819 1.74E-06 5.759881468 -0.171952612 RTGS(ph)NAAQYK ddPTM_HeLa_A486_30min_R1 2 RTGSNAAQYK 10 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 RT(0.147)GS(0.853)NAAQYK;RT(0.388)GS(0.612)NAAQYK ; 109.15 0.0021148 183590000 306013 316104 231862 153881 354922 323278 408964 423703 217104 335571 TRUE FALSE FALSE 284563.069 291054.7678 321645.1759 358242.7447 310404.3732 283395.2472 306636.8816 327235.0763 235922.7495 251541.8374 1.131275306 1.157082936 1.278694547 1.424187517 1.234006941 1.126632651 1.219029346 1.300917095 0.9379066 1 17.94043885 -7.765993951 24.99997597 0.968953152 1.235170438 0.606826072 0.085326708 86.4527393 474508.991 0.079845634 0.023337668 1.71E-08 7.765993951 0.266217287 RTGS(ph)NIS(ph)GASSDISLDEQYKHQLEETKK ddPTM_HeLa_A486_30min_R1 2 RTGSNISGASSDISLDEQYKHQLEETKK 28 3 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 RT(0.461)GS(0.539)NIS(0.995)GAS(0.002)S(0.002)DISLDEQYKHQLEETKK;RT(0.472)GS(0.538)NIS(0.919)GAS(0.033)S(0.031)DIS(0.006)LDEQY(0.001)KHQLEET(0.001)KK ; 87.549 0.0014203 233350000 95501 79863 30472 60252 73585 100757 148854 137968 59777 170264 TRUE FALSE FALSE 88806.87307 73534.36502 42271.57447 140269.701 64355.28315 88326.62576 111609.1548 106555.6982 64958.51849 127628.7862 0.695821654 0.576158148 0.331207212 1.099044386 0.504237994 0.692058809 0.874482616 0.834887657 0.508964478 1 16.96159423 -14 0.085539757 1.951215311 0.419021248 0.174356035 0.207751616 402.6195391 2.409249944 72.15172982 5.734648238 1.00E-14 14 -1.532194062 RTGT(ph)PSDPR ddPTM_HeLa_A486_30min_R1 1 RTGTPSDPR 9 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 RT(0.28)GT(0.716)PS(0.004)DPR 78.83 0.011802 1549100000 1722800 1766800 1694100 673720 2352100 1647200 1837000 1757400 1675100 2109300 TRUE FALSE FALSE 1602040.617 1626792.333 2350100.89 1568454.208 2057077.686 1443985.212 1377363.17 1357278.384 1820299.017 1581117.551 1.013233087 1.028887658 1.486354312 0.991990891 1.301027672 0.913268726 0.871132681 0.858429775 1.151273677 1 20.5925132 -6.279794529 24.42012187 0.944492293 1.165095211 0.292461453 0.159018151 759.1946004 1010046.481 0.05534156 0.048903454 5.25E-07 6.279794529 0.220602918 RTHS(ph)DAS(ph)DDEAFTTSK ddPTM_HeLa_A486_30min_R1 2 RTHSDASDDEAFTTSK 16 1 H0YK04;Q13017-2;Q13017 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 2 0 RT(0.027)HS(0.973)DAS(1)DDEAFTTSK;RT(0.286)HS(0.714)DAS(1)DDEAFTTSK ; 148.53 2.68E-08 1353980000 1357470 1223010 783950 480450 1416830 1239810 1571570 1598920 933740 1471160 TRUE FALSE FALSE 1262318.363 1126094.233 1087516.435 1118511.881 1239117.97 1086854.848 1178346.564 1234880.82 1014677.335 1102771.96 1.144677602 1.021148772 0.986166201 1.014273051 1.123639351 0.98556627 1.068531488 1.119797079 0.920115284 1 20.07270306 -7.606605054 0.007198284 6.24E-08 2.05921467 0.094490461 0.065899683 6501.675327 44.8576638 6432.574815 6394.584497 2.47E-08 7.606605054 2.059214607 RTHT(ph)GEKPYACSHCDK ddPTM_HeLa_A485_30min_R1 1 RTHTGEKPYACSHCDK 16 2 A0A2R8Y595;A0A2R8YFL0;P49711;P49711-2 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 RT(0.064)HT(0.936)GEKPYACSHCDK 121.47 3.04E-05 67479000 62458 50491 36513 65124 81117 65193 89725 99006 56713 106480 TRUE FALSE FALSE 76351.56662 56395.48324 50020.67813 68681.55922 73040.70666 68606.40467 70554.52076 74724.62326 68094.7789 79936.49562 0.955152788 0.705503573 0.625755204 0.859201528 0.91373416 0.85826135 0.882632147 0.934799839 0.851860947 1 16.28656671 -5.504538461 23.13478357 0.898749772 0.754141205 0.354801687 0.086676202 306.031864 386033.6528 0.024402396 0.035365361 3.13E-06 5.504538461 -0.144608567 RTHT(ph)GEKPYACSHCDK ddPTM_HeLa_A486_30min_R1 2 RTHTGEKPYACSHCDK 16 2 A0A2R8Y595;A0A2R8YFL0;P49711;P49711-2 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 RT(0.185)HT(0.815)GEKPYACSHCDK;RT(0.03)HT(0.97)GEKPYACSHCDK ; 125.45 1.51E-05 109900000 205838 184035 110753 104430 206014 228610 269880 254290 157243 255970 TRUE FALSE FALSE 191409.8191 169451.3964 153639.5277 243118.3176 180173.8031 200406.4225 202353.1695 196393.7181 170872.9498 191873.4459 0.997583685 0.883141466 0.800733666 1.267076413 0.939024169 1.0444719 1.054617894 1.023558613 0.890550274 1 17.54979554 RTIQEVLEEQS(ph)EDEDR ddPTM_HeLa_A485_30min_R1 2 RTIQEVLEEQSEDEDR 16 1 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 RTIQEVLEEQS(1)EDEDR;RTIQEVLEEQS(1)EDEDR ; 198.51 1.18E-24 579400000 192930 296730 213313 206468 197617 229101 248738 209240 187000 231111 TRUE FALSE FALSE 235846.6129 331429.9923 292226.3554 217746.824 177941.5576 241096.3741 195593.0943 157923.5619 224529.1847 173499.281 1.359352105 1.910267238 1.68430874 1.255030123 1.025604006 1.38961022 1.127342391 0.910226031 1.294121702 1 17.40457016 -5.338643526 3.84318642 1.134507875 1.679980886 0.626261064 0.181411174 0.141385206 3.995366996 0.05112918 0.08012035 4.59E-06 5.338643526 0.545473011 RTIQEVLEEQS(ph)EDEDR ddPTM_HeLa_A486_30min_R1 4 RTIQEVLEEQSEDEDR 16 1 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 RTIQEVLEEQS(1)EDEDR;RTIQEVLEEQS(1)EDEDR;RTIQEVLEEQS(1)EDEDR;RTIQEVLEEQS(1)EDEDR ;;; 220.65 5.31E-34 1541641000 1678790 1676924 1103346 487758 1356538 1381696 1477145 1465227 1362893 1856385 TRUE FALSE FALSE 1561115.49 1544038.435 1530591.12 1135525.274 1186388.355 1211236.396 1107547.697 1131626.798 1481029.663 1391534.113 1.121866489 1.109594383 1.099930721 0.816024029 0.852575833 0.870432413 0.795918467 0.813222462 1.064314305 1 20.40824485 -5.250572436 23.6909044 0.873733822 1.11037698 0.609592892 0.081247555 220.8073847 481377.1276 0.021700525 0.037066789 5.62E-06 5.250572436 0.236643157 RTIQEVLEEQS(ph)EDEDREAK ddPTM_HeLa_A485_30min_R1 4 RTIQEVLEEQSEDEDREAK 19 2 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK ;;; 276.78 8.04E-70 2592370000 723660 728023 636085 1167170 1185580 923669 1502560 1543180 764894 1671160 TRUE FALSE FALSE 884635.6704 813158.9569 871399.3112 1230929.542 1067539.492 972030.8806 1181525.781 1164712.685 918401.2098 1254570.567 0.70513026 0.648157209 0.69457975 0.981156081 0.850920243 0.774791714 0.941777061 0.928375586 0.732044282 1 20.25876219 -5.170929142 7.101031162 0.879890726 0.676616509 0.568320718 0.081484997 0.192234787 13.05137065 0.021645908 0.037763684 6.75E-06 5.170929142 -0.203274217 RTIQEVLEEQS(ph)EDEDREAK ddPTM_HeLa_A486_30min_R1 6 RTIQEVLEEQSEDEDREAK 19 2 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK;RT(0.005)IQEVLEEQS(0.995)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK;RTIQEVLEEQS(1)EDEDREAK ;;;;; 276.03 8.51E-70 3071610000 524636 517411 386318 336763 634916 619026 828884 813417 428046 804012 TRUE FALSE FALSE 487861.7256 476409.468 535910.6756 784001.2831 555278.9149 542656.8659 621488.4562 628219.7059 465149.3719 602682.162 0.809484263 0.790482112 0.889209453 1.300853638 0.921346192 0.900403065 1.031204332 1.042373154 0.771798804 1 19.20103784 -5.005883324 24.44448447 0.999589508 0.809948734 0.279092951 0.127207672 254.2098539 1056233.925 0.033835449 0.066930707 9.87E-06 5.005883324 -0.189640774 RTIQEVLEEQS(ph)EDEDREAKR ddPTM_HeLa_A485_30min_R1 2 RTIQEVLEEQSEDEDREAKR 20 3 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 RTIQEVLEEQS(1)EDEDREAKR;RTIQEVLEEQS(1)EDEDREAKR ; 204.31 2.18E-26 1298050000 135796 128235 142172 181830 270437 219859 301687 333981 173761 288423 TRUE FALSE FALSE 166003.3517 143230.9678 194767.3391 191762.9125 243511.3427 231370.4773 237229.1079 252071.6361 208633.2389 216524.4541 0.766672533 0.661500191 0.899516592 0.8856409 1.124636678 1.068565111 1.095622704 1.164171673 0.963555085 1 17.72417045 -5.275159228 1.409366621 1.079054796 0.714765664 0.767733659 0.074062105 0.185277586 0.711569423 0.023542164 0.055141325 5.31E-06 5.275159228 -0.364289132 RTIQEVLEEQS(ph)EDEDREAKR ddPTM_HeLa_A486_30min_R1 4 RTIQEVLEEQSEDEDREAKR 20 3 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 RTIQEVLEEQS(1)EDEDREAKR;RTIQEVLEEQS(1)EDEDREAKR;RTIQEVLEEQS(1)EDEDREAKR;RTIQEVLEEQS(1)EDEDREAKR ;;; 272.45 2.60E-72 1913580000 402711 359432 313657 285388 588447 503771 723299 696892 326102 624219 TRUE FALSE FALSE 374483.0385 330949.2993 435113.3904 664397.6867 514638.4902 441620.856 542321.9399 538224.9046 354368.7839 467910.4994 0.800330488 0.707291885 0.929907303 1.419924724 1.099865232 0.943814803 1.159029217 1.150273194 0.757343091 1 18.83587308 -4.999434416 12.39480446 1.088212131 0.769866106 0.385840751 0.161859775 0.08184273 771.5822445 0.043060261 0.085608606 1.00E-05 4.999434416 -0.318346025 RTLDS(ph)DEERPRPAPPDWSHMR ddPTM_HeLa_A485_30min_R1 8 RTLDSDEERPRPAPPDWSHMR 21 3 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 RT(0.059)LDS(0.941)DEERPRPAPPDWSHMR;RT(0.192)LDS(0.808)DEERPRPAPPDWSHMR;RT(0.141)LDS(0.859)DEERPRPAPPDWSHMR;RT(0.312)LDS(0.688)DEERPRPAPPDWSHMR;RT(0.19)LDS(0.81)DEERPRPAPPDWSHMR;RT(0.242)LDS(0.758)DEERPRPAPPDWSHMR;RT(0.036)LDS(0.964)DEERPRPAPPDWSHMR;RT(0.048)LDS(0.952)DEERPRPAPPDWSHMR ;;;;;;; 210.39 6.29E-27 12568310000 1707718 3315624 2774867 1370659 3572374 3350826 3953798 5843610 2368443 1961615 TRUE FALSE FALSE 2087593.978 3703357.385 3801405.775 1445534.63 3216695.901 3526270.068 3109036.758 4410455.485 2843767.785 1472620.481 1.417604878 2.51480774 2.581388636 0.981607039 2.184334621 2.394554546 2.111227432 2.994970898 1.931093463 1 20.48995424 -5.965882061 24.998211 2.221148046 1.921773112 0.008065739 0.643519148 673.5028201 493472.596 0.196078463 0.222330782 1.08E-06 5.965882061 -0.299374934 RTLDS(ph)DEERPRPAPPDWSHMR ddPTM_HeLa_A486_30min_R1 7 RTLDSDEERPRPAPPDWSHMR 21 3 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 RT(0.223)LDS(0.777)DEERPRPAPPDWSHMR;RT(0.264)LDS(0.736)DEERPRPAPPDWSHMR;RT(0.122)LDS(0.878)DEERPRPAPPDWSHMR;RT(0.192)LDS(0.808)DEERPRPAPPDWSHMR;RT(0.266)LDS(0.734)DEERPRPAPPDWSHMR;RT(0.018)LDS(0.982)DEERPRPAPPDWSHMR;RT(0.021)LDS(0.979)DEERPRPAPPDWSHMR ;;;;;; 208.58 6.22E-27 5108960000 1498985 1198239 1275775 504082 2102531 1165688 1609034 1705326 993103 1600389 TRUE FALSE FALSE 1393913.892 1103286.178 1769789.246 1173528.371 1838811.957 1021877.266 1206436.675 1317060.497 1079185.968 1199641.178 1.161942353 0.91968015 1.475265504 0.978232819 1.532801633 0.851819098 1.005664608 1.0978787 0.899590634 1 20.19417152 RTLEGELHDLR ddPTM_HeLa_A485_30min_R1 3 RTLEGELHDLR 11 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 157.03 3.38E-07 482177500 237497.5 361520.6 333448.4 234318.1 391978.3 339585.8 373491 440484 301978.4 321347 FALSE FALSE TRUE 290327.9995 403797.2894 456804.8391 247118.3045 352951.5641 357365.9874 293691.5967 332454.6083 362582.695 241241.1069 1.203476486 1.67383285 1.893561363 1.024362339 1.463065597 1.4813644 1.217419372 1.378100991 1.502988855 1 17.88011623 -12.69575768 0.173369881 6.34E-10 1.539212376 0.22550038 0.234616052 122.1186771 1.749866181 44.52599508 0.866106881 2.01E-13 12.69575768 1.539212375 RTLTTGSSAYLWKPPS(ph)R ddPTM_HeLa_A486_30min_R1 2 RTLTTGSSAYLWKPPSR 17 2 Q9BQS8;Q9BQS8-4;Q9BQS8-3;Q9BQS8-2 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 0 RTLTTGSSAYLWKPPS(1)R;RTLTTGSSAYLWKPPS(1)R ; 95.926 0.00028311 544290000 451890 373890 205950 238400 383580 455910 519510 520690 263430 666360 TRUE FALSE FALSE 420214.8446 344261.5947 285699.3555 555007.2481 335467.8197 399664.4596 389523.1032 402140.2536 286264.3245 499499.1187 0.841272444 0.689213618 0.571971691 1.111127582 0.671608431 0.80013046 0.779827408 0.805087013 0.573102762 1 18.93012261 -11.22823833 2.356619123 1.816151048 0.763499721 0.191990537 0.147352661 11016427.51 2202294.108 47901566.08 0.037125673 5.91E-12 11.22823833 -1.052651327 RTPAPPEPGS(ph)PAPGEGPSGR ddPTM_HeLa_A485_30min_R1 4 RTPAPPEPGSPAPGEGPSGR 20 1 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(0.965)PAPGEGPS(0.034)GR;RTPAPPEPGS(0.997)PAPGEGPS(0.003)GR ;;; 216.64 1.83E-35 5634500000 1121050 1815770 1730890 1045430 2212250 1944800 2353700 3149880 1441250 1491210 TRUE FALSE FALSE 1370423.705 2028108.506 2371218.239 1102539.194 1991990.622 2046626.721 1850812.767 2377366.991 1730495.655 1119478.791 1.224162277 1.811654248 2.118144854 0.984868318 1.779391123 1.828196066 1.653280779 2.123637367 1.54580477 1 20.09439576 RTPAPPEPGS(ph)PAPGEGPSGR ddPTM_HeLa_A486_30min_R1 4 RTPAPPEPGSPAPGEGPSGR 20 1 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR ;;; 160.52 1.80E-13 4541610000 1201590 1322390 1181040 478570 1698160 1151410 1337080 1479760 1019320 1375570 TRUE FALSE FALSE 1117364.746 1217599 1638370.317 1114135.146 1485160.938 1009360.741 1002528.442 1142850.951 1107675.478 1031118.319 1.08364358 1.180852845 1.588925624 1.080511446 1.44033998 0.978899048 0.972272943 1.108360632 1.074246726 1 19.97577846 -6.278785745 24.79810036 1.030123212 1.276283914 0.406957231 0.14971622 779.455381 1114293.903 0.052152684 0.046102547 5.26E-07 6.278785745 0.246160702 RTPHVQAVQGPLGS(ph)PPK ddPTM_HeLa_A485_30min_R1 1 RTPHVQAVQGPLGSPPK 17 1 Q15149 Q15149 PLEC Plectin 1 0 RTPHVQAVQGPLGS(1)PPK 76.417 0.0030309 218820000 247550 188710 153010 329690 266970 213380 337990 291870 176430 452380 TRUE FALSE FALSE 302616.6435 210777.9929 209614.7663 347700.1299 240389.5294 224552.2469 265775.6754 220288.4249 211837.8827 339609.9914 0.891071085 0.620647208 0.617222024 1.02382185 0.70783998 0.661206244 0.78259086 0.648651189 0.623768111 1 18.37351938 -10.36246912 6.172987009 1.000031419 0.729189265 0.285951172 0.127617138 5.52E-05 5.70E-06 0.123539559 0.029959274 4.34E-11 10.36246912 -0.270842154 RTPHVQAVQGPLGS(ph)PPKR ddPTM_HeLa_A485_30min_R1 1 RTPHVQAVQGPLGSPPKR 18 2 Q15149 Q15149 PLEC Plectin 1 0 RTPHVQAVQGPLGS(1)PPKR 54.235 0.01579 1833500000 597740 562980 425130 818350 804480 604530 972000 828320 613570 1144900 TRUE FALSE FALSE 730705.2008 628815.6137 582403.2781 863054.3883 724383.1465 636182.256 764324.2595 625173.2212 736707.871 859497.5003 0.850153957 0.731608426 0.677609042 1.004138334 0.842798433 0.740179298 0.88926874 0.72737061 0.857137887 1 19.71313392 -8.020199481 22.99277969 1.000000007 0.808109096 0.29007416 0.09055454 673.5375913 766679.4759 0.08781599 0.022673991 9.55E-09 8.020199481 -0.191890911 RTPHVQAVQGPLGS(ph)PPKR ddPTM_HeLa_A486_30min_R1 1 RTPHVQAVQGPLGSPPKR 18 2 Q15149 Q15149 PLEC Plectin 1 0 RTPHVQAVQGPLGS(1)PPKR 114.84 3.30E-05 2153200000 331830 294590 202650 85128 341210 358220 357760 367940 222860 307270 TRUE FALSE FALSE 308570.4306 271245.6155 281121.5072 198182.2861 298412.2601 314026.4585 268244.664 284168.0941 242177.6842 230327.592 1.339702412 1.177651419 1.220529007 0.860436583 1.29559927 1.363390533 1.164622361 1.233756197 1.051448861 1 17.81332772 -7.873001602 4.430792174 1.002978243 1.201505872 0.233977098 0.131999335 0.322068452 10.07360747 0.13031353 0.034336784 1.34E-08 7.873001602 0.198527629 RTPHVQAVQGPLGS(ph)PPKRGPLPTEEQR ddPTM_HeLa_A485_30min_R1 1 RTPHVQAVQGPLGSPPKRGPLPTEEQR 27 3 Q15149 Q15149 PLEC Plectin 1 0 RTPHVQAVQGPLGS(1)PPKRGPLPTEEQR 243.26 6.50E-50 1705800000 149860 320010 229230 143200 375940 448620 622600 1126500 213020 240340 TRUE FALSE FALSE 183195.84 357432.3858 314031.7161 151022.6534 338510.0936 472109.0495 489576.4238 850224.1087 255771.1601 180427.6611 1.01534232 1.98102876 1.740485434 0.837026055 1.876154086 2.616611259 2.713422215 4.712271408 1.417582861 1 17.46106101 -6.180424896 3.163795774 2.752450948 1.452217511 0.193929513 0.98305949 0.348416774 6.784604556 0.337459552 0.331437045 6.60E-07 6.180424896 -1.300233438 RTPHVQAVQGPLGS(ph)PPKRGPLPTEEQR ddPTM_HeLa_A486_30min_R1 1 RTPHVQAVQGPLGSPPKRGPLPTEEQR 27 3 Q15149 Q15149 PLEC Plectin 1 0 RTPHVQAVQGPLGS(1)PPKRGPLPTEEQR 204.47 2.03E-28 919210000 243020 211190 212830 106320 424380 217270 395000 434060 186470 316010 TRUE FALSE FALSE 225985.553 194454.5353 295243.4758 247518.3331 371150.3032 190465.4364 296166.8221 335234.0135 202633.3697 236879.0391 0.954012452 0.820902246 1.246389199 1.044914459 1.566834721 0.80406201 1.250287164 1.415211809 0.855429718 1 17.85379102 -4.759630817 24.99637935 1.165382058 0.887457292 0.170874506 0.226869065 70.69565636 977016.5549 0.055549274 0.132263597 1.74E-05 4.759630817 -0.277924766 RTPS(ph)DDEEDNLFAPPK ddPTM_HeLa_A485_30min_R1 6 RTPSDDEEDNLFAPPK 16 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 RT(0.023)PS(0.977)DDEEDNLFAPPK;RT(0.021)PS(0.979)DDEEDNLFAPPK;RT(0.012)PS(0.988)DDEEDNLFAPPK;RT(0.019)PS(0.981)DDEEDNLFAPPK;RT(0.25)PS(0.75)DDEEDNLFAPPK;RT(0.096)PS(0.904)DDEEDNLFAPPK ;;;;; 221.48 4.98E-34 10269770000 4534820 3811780 3462890 6413190 5555330 4336260 5868890 4741250 4448180 8202810 TRUE FALSE FALSE 5543575.064 4257534.513 4743957.114 6763526.331 5002221.839 4563299.868 4614953.707 3578451.004 5340888.925 6158000.429 0.900223235 0.691382627 0.770372976 1.098331578 0.812312681 0.741035978 0.749424064 0.581106001 0.867308956 1 22.55403054 -6.001379136 24.98805675 0.761139079 0.859583164 0.047104942 0.140065045 134.4434761 2436015.431 0.044177986 0.049418053 9.97E-07 6.001379136 0.098444085 RTPS(ph)DDEEDNLFAPPK ddPTM_HeLa_A486_30min_R1 6 RTPSDDEEDNLFAPPK 16 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 RT(0.016)PS(0.984)DDEEDNLFAPPK;RT(0.011)PS(0.989)DDEEDNLFAPPK;RT(0.025)PS(0.975)DDEEDNLFAPPK;RT(0.015)PS(0.985)DDEEDNLFAPPK;RT(0.033)PS(0.967)DDEEDNLFAPPK;RT(0.034)PS(0.966)DDEEDNLFAPPK ;;;;; 243.48 7.99E-42 13173970000 3736380 4251200 2444730 1505642 3805350 4378010 4844210 4658210 3289049 4908670 TRUE FALSE FALSE 3474479.057 3914319.429 3391394.928 3505210.667 3328047.52 3837895.639 3632137.421 3597637.271 3574146.416 3679507.082 0.944278399 1.063816251 0.921698166 0.952630499 0.90448189 1.043046134 0.987126085 0.977749788 0.971365549 1 21.81108108 -6.269449867 24.97568401 0.993921154 0.961047807 0.160363486 0.043506521 1448.890081 4517437.822 0.01564333 0.014013902 5.38E-07 6.269449867 -0.032873347 RTPS(ph)DDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGK ddPTM_HeLa_A485_30min_R1 1 RTPSDDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGK 36 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 RT(0.004)PS(0.996)DDEEDNLFAPPKLTDEDFSPFGSGGGLFSGGK 385.58 4.52E-195 742870000 82960 114000 57025 77945 113960 152970 228890 329500 82236 103610 TRUE FALSE FALSE 101414.1658 127331.3083 78120.92051 82202.93798 102613.7423 160979.2727 179985.7816 248689.6084 98740.01089 77781.9338 1.303826748 1.637029347 1.004358168 1.056838445 1.31924905 2.069622916 2.31397926 3.197266977 1.269446593 1 16.24714748 -6.261451177 4.629344923 2.136003049 1.252696157 0.244252463 0.587405744 0.228707149 13.70857683 0.200137597 0.187330282 5.48E-07 6.261451177 -0.883306891 RTPS(ph)EADR ddPTM_HeLa_A485_30min_R1 6 RTPSEADR 8 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 RT(0.048)PS(0.952)EADR;RT(0.113)PS(0.887)EADR;RT(0.029)PS(0.971)EADR;RT(0.056)PS(0.944)EADR;RT(0.029)PS(0.971)EADR;RT(0.149)PS(0.851)EADR ;;;;; 117.86 0.00051165 6093289000 3100802 4243682 2739651 3382247 2432649 2947713 3222293 3406365 3133192 4190943 TRUE FALSE FALSE 3790564.707 4739943.695 3753161.911 3567010.589 2190445.924 3102050.695 2533823.777 2570948.643 3761994.895 3146218.039 1.204800386 1.506552832 1.192912209 1.133745515 0.696215551 0.985961766 0.805355429 0.817155267 1.195719702 1 21.58518722 -5.355864842 2.376839091 0.907212529 1.340852108 0.557600967 0.152655781 0.199286566 2.197561887 0.0445136 0.076247692 4.41E-06 5.355864842 0.433639579 RTPS(ph)EADR ddPTM_HeLa_A486_30min_R1 3 RTPSEADR 8 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 RT(0.141)PS(0.859)EADR;RT(0.053)PS(0.947)EADR;RT(0.01)PS(0.99)EADR ;; 107.97 0.00077441 4028748000 2805465 1756754 2670022 949829 1909315 3507167 2395562 2043189 3164930 2777894 TRUE FALSE FALSE 2608816.391 1617542.415 3703926.024 2211249.914 1669830.909 3074488.394 1796167.05 1577999.467 3439268.681 2082291.261 1.252858541 0.776808915 1.778774225 1.061931131 0.801919952 1.476492963 0.862591648 0.757818801 1.651675126 1 20.98974045 RTPS(ph)EADRWLEEVSK ddPTM_HeLa_A485_30min_R1 3 RTPSEADRWLEEVSK 15 2 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 RT(0.167)PS(0.833)EADRWLEEVSK;RT(0.008)PS(0.992)EADRWLEEVSK;RT(0.001)PS(0.999)EADRWLEEVSK ;; 241.13 2.34E-41 2032900000 604917 817409 615363 752975 1440290 1343959 1811540 2548660 871006 1219113 TRUE FALSE FALSE 739478.6997 912997.872 843011.3811 794108.1176 1296889.67 1414326.615 1424489.68 1923597.139 1045808.915 915210.5652 0.807987503 0.997582312 0.921111942 0.867678049 1.417039662 1.545356521 1.55646114 2.101808274 1.142697598 1 19.80374418 -5.83379047 4.133289374 1.537448181 0.904933582 0.482452033 0.280481529 0.169223545 5.604718461 0.085738735 0.100338465 1.47E-06 5.83379047 -0.632514599 RTPS(ph)EADRWLEEVSK ddPTM_HeLa_A486_30min_R1 4 RTPSEADRWLEEVSK 15 2 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 RT(0.063)PS(0.937)EADRWLEEVSK;RT(0.206)PS(0.794)EADRWLEEVSK;RT(0.128)PS(0.872)EADRWLEEVSK;RT(0.028)PS(0.972)EADRWLEEVSK ;;; 182.98 6.00E-18 2041930000 917620 871490 722055 612768 1719000 1164644 1723790 1744370 786924 1341960 TRUE FALSE FALSE 853299.5766 802429.9585 1001654.033 1426554.872 1503386.991 1020962.065 1292479.51 1347215.03 855135.2059 1005924.481 0.848273993 0.797703976 0.995754703 1.41815305 1.49453266 1.014949018 1.284867337 1.339280488 0.850098811 1 19.94009057 -5.019281186 5.049292449 1.222744503 0.834676966 0.387685012 0.190619785 0.169699774 12.39179601 0.051732352 0.099870952 9.57E-06 5.019281186 -0.388067536 RTPS(ph)EAER ddPTM_HeLa_A485_30min_R1 6 RTPSEAER 8 1 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 RT(0.008)PS(0.992)EAER;RT(0.002)PS(0.998)EAER;RT(0.131)PS(0.869)EAER;RT(0.015)PS(0.985)EAER;RT(0.027)PS(0.973)EAER;RT(0.015)PS(0.985)EAER ;;;;; 110.74 0.00070075 11000190000 1685422 2438898 2138401 1784898 2399158 2146246 2472903 2963510 2222391 2312610 TRUE FALSE FALSE 2060338.309 2724105.906 2929484.516 1882402.458 2160289.406 2258620.122 1944547.072 2236704.526 2668404.489 1736118.887 1.18674955 1.569077973 1.687375523 1.084258959 1.244321124 1.300959363 1.120054097 1.288336036 1.536994101 1 20.72743431 -5.267702259 24.99883791 1.23660174 1.489868713 0.294517987 0.180845206 627.6296589 2505239.851 0.050478809 0.07697022 5.40E-06 5.267702259 0.253266973 RTPS(ph)EAER ddPTM_HeLa_A486_30min_R1 3 RTPSEAER 8 1 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 RT(0.034)PS(0.966)EAER;RT(0.01)PS(0.99)EAER;RT(0.167)PS(0.833)EAER ;; 133.05 0.00030242 7113800000 2788265 2480887 2961648 1179828 2994534 3118521 3205423 2733471 2895367 2696792 TRUE FALSE FALSE 2592822.022 2284292.479 4108477.421 2746699.209 2618931.623 2733789.586 2403392.262 2111119.325 3146339.743 2021497.73 1.282624256 1.130000022 2.032392795 1.358744642 1.295540224 1.352358474 1.188916627 1.044334254 1.556439909 1 20.94699315 -5.649928079 4.184651057 1.24464398 1.480438005 0.142580067 0.261814436 0.450687749 14.16892024 0.08014126 0.104478675 2.24E-06 5.649928079 0.235794026 RTPS(ph)LALTPPQAEQEVDVLDVNVR ddPTM_HeLa_A485_30min_R1 1 RTPSLALTPPQAEQEVDVLDVNVR 24 1 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 RT(0.399)PS(0.6)LALT(0.001)PPQAEQEVDVLDVNVR 103.64 2.11E-07 0 32637 38000 32985 42913 34037 30659 53717 48723 44427 67958 TRUE FALSE FALSE 39896.98805 42443.76944 45187.52412 45257.22853 30648.15677 32264.25783 42239.92412 36773.60786 53343.09139 51017.32127 0.782028281 0.831948216 0.885729062 0.887095351 0.600740219 0.632417717 0.827952606 0.720806325 1.045587852 1 15.63869953 -7.765453498 24.9999163 1.022794071 0.77240121 0.542463201 0.092458911 89.60242257 558006.0439 0.086812639 0.025644559 1.72E-08 7.765453498 -0.250392862 RTPS(ph)TKPTVR ddPTM_HeLa_A485_30min_R1 3 RTPSTKPTVR 10 2 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RT(0.116)PS(0.852)T(0.031)KPT(0.002)VR;RT(0.026)PS(0.864)T(0.109)KPTVR;RT(0.203)PS(0.776)T(0.019)KPT(0.002)VR ;; 104.41 0.00045416 1165623000 699999 744860 602501 608324 1009170 810610 996460 1220620 904180 1033250 TRUE FALSE FALSE 855711.3626 831964.8976 825391.1921 641555.1998 908693.4914 853052.2862 783558.1807 921261.0311 1085640.632 775679.7906 1.103176044 1.072562297 1.06408753 0.827087682 1.171480168 1.099747984 1.010156756 1.187682137 1.399598965 1 19.56510169 -7.365587212 5.202874826 1.227275642 1.049553535 0.217966815 0.12404163 0.297405571 12.00780157 0.068763949 0.031863925 4.31E-08 7.365587212 -0.177722107 RTPS(ph)TKPTVR ddPTM_HeLa_A486_30min_R1 1 RTPSTKPTVR 10 2 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RT(0.219)PS(0.659)T(0.121)KPTVR 117.2 0.00018029 323320000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 RTPS(ph)VGK ddPTM_HeLa_A486_30min_R1 1 RTPSVGK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 RT(0.005)PS(0.995)VGK 57.347 0.024752 60720000 110370 82914 72556 47155 85407 137540 127010 89036 97903 157490 TRUE FALSE FALSE 102633.633 76343.59267 100651.6263 109779.2231 74694.45767 120571.7132 95230.75463 68764.44644 106389.3109 118053.4789 0.869382537 0.646686513 0.852593479 0.929910953 0.632717124 1.021331301 0.806674699 0.582485557 0.901195897 1 16.84908103 -7.998538129 24.99913378 1.00000007 0.793716935 0.206588112 0.131100848 55.55779274 950059.9733 0.123304119 0.031836987 1.00E-08 7.998538129 -0.206283136 RTQAPT(ph)KASE ddPTM_HeLa_A485_30min_R1 2 RTQAPTKASE 10 2 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 RT(0.001)QAPT(0.634)KAS(0.365)E;RTQAPT(0.613)KAS(0.387)E ; 69.451 0.0088627 108091000 194374 210152 155770 229940 277486 226107 348620 369880 187028 329360 TRUE FALSE FALSE 237611.8257 234727.4483 213395.8051 242501.04 249858.5195 237945.6129 274134.489 279166.3501 224562.8041 247256.6134 0.960992802 0.94932728 0.863053983 0.980766648 1.0105231 0.962342764 1.108704375 1.129055139 0.908217584 1 17.91564958 -5.847136101 1.486639086 1.037152497 0.927856294 0.275783438 0.065932501 0.481381587 2.21144758 0.025845982 0.032894776 1.42E-06 5.847136101 -0.109296204 RTQAPTKAS(ph)E ddPTM_HeLa_A485_30min_R1 1 RTQAPTKASE 10 2 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 RTQAPT(0.027)KAS(0.973)E 73.435 0.028986 89870000 198490 204720 147580 233690 282520 211500 326020 369310 172680 301980 TRUE FALSE FALSE 242643.4157 228660.2232 202175.9833 246455.893 254391.3168 222573.813 256363.1637 278736.1434 207335.2921 226701.9435 1.07031908 1.008638125 0.891814072 1.087136216 1.122139991 0.981790493 1.130837961 1.229526925 0.914572186 1 17.79043723 RTQAPTKAS(ph)E ddPTM_HeLa_A486_30min_R1 4 RTQAPTKASE 10 2 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 RTQAPTKAS(1)E;RTQAPTKAS(1)E;RTQAPTKAS(1)E;RTQAPTKAS(1)E ;;; 134.06 3.94E-05 1745390000 1246430 1120740 739490 597130 1381390 1237040 1574720 1528860 845830 1528630 TRUE FALSE FALSE 1159061.694 1031928.481 1025840.332 1390148.817 1208123.185 1084426.582 1180708.4 1180771.953 919147.2254 1145851.098 1.011529068 0.900578166 0.895264955 1.213201977 1.054345706 0.946393981 1.030420446 1.03047591 0.802152415 1 20.12798815 -9.609198513 9.759294161 0.999995313 0.991875559 0 0.105821608 0 0 0.104675648 0.025387574 2.46E-10 9.609198513 -0.008119754 RTQGT(ph)SLRSPVS(ph)FSPTDHSLSTSSGSSIFTPEYDDSR ddPTM_HeLa_A486_30min_R1 1 RTQGTSLRSPVSFSPTDHSLSTSSGSSIFTPEYDDSR 37 2 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 0 RT(0.334)QGT(0.475)S(0.1)LRS(0.109)PVS(0.901)FS(0.079)PT(0.002)DHSLSTSSGSSIFTPEYDDSR 155 2.64E-09 144480000 41590 47531 48175 10140 67940 44318 54826 49971 47134 40370 TRUE FALSE FALSE 38674.75577 43764.47046 66829.65017 23606.43245 59418.33168 38850.49575 41107.95491 38593.69416 51219.61307 30261.08924 1.278035813 1.446229186 2.208435052 0.780091961 1.963522569 1.28384327 1.358442672 1.275357072 1.692589869 1 14.8851763 -12.08845644 0.278651275 5.90E-11 1.514524189 0.118110535 0.380369173 146.4857565 3.695992935 86.58997705 0.432501416 8.16E-13 12.08845644 1.514524188 RTQGTSLRS(ph)PVS(ph)FSPTDHSLSTSSGSSIFTPEYDDSR ddPTM_HeLa_A485_30min_R1 1 RTQGTSLRSPVSFSPTDHSLSTSSGSSIFTPEYDDSR 37 2 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 0 RT(0.068)QGT(0.089)S(0.097)LRS(0.75)PVS(0.839)FS(0.141)PT(0.005)DHS(0.004)LS(0.003)T(0.003)S(0.003)SGSSIFTPEYDDSR 106.86 4.09E-05 149200000 17769 26818 23467 16232 32300 22676 31061 37878 24917 26275 TRUE FALSE FALSE 21721.65275 29954.13181 32148.41984 17118.71306 29084.09859 23863.2803 24424.5636 28588.36111 29917.61335 19725.12606 1.101217436 1.51857746 1.629820755 0.867863303 1.474469593 1.209791016 1.238246262 1.449337309 1.516726092 1 14.2677469 RTQS(ph)LSALPK ddPTM_HeLa_A486_30min_R1 1 RTQSLSALPK 10 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 RT(0.304)QS(0.695)LS(0.001)ALPK 127.71 5.75E-05 525060000 2020500 1713800 1085600 706120 1915000 1870600 2234000 2202700 1346700 2535700 TRUE FALSE FALSE 1878873.384 1577992.246 1505973.393 1643883.045 1674802.843 1639824.391 1675029.571 1701193.295 1463433.04 1900744.215 0.988493543 0.830197053 0.792307235 0.864862843 0.881130049 0.862727545 0.881249333 0.895014322 0.769926342 1 20.85813297 -5.539966517 19.37581017 0.875233149 0.860030259 0 0.070181327 137.8375108 156282.8557 0.020184978 0.026084459 2.88E-06 5.539966517 -0.01520289 RTQS(ph)SLTVSEVLTR ddPTM_HeLa_A485_30min_R1 3 RTQSSLTVSEVLTR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RT(0.003)QS(0.897)S(0.063)LT(0.03)VSEVLT(0.008)R;RT(0.045)QS(0.82)S(0.133)LT(0.002)VSEVLTR;RTQS(0.729)S(0.27)LTVSEVLTR ;; 138.44 3.20E-06 714047000 162083 287610 236092 142736 328849 273437 316292 404888 221218 194431 TRUE FALSE FALSE 198137.8042 321243.4876 323432.2554 150533.3063 296107.6389 287753.7385 248713.6303 305588.5832 265614.4235 145962.9299 1.357452911 2.200856668 2.215852035 1.031311898 2.028649596 1.971416569 1.703950657 2.093604063 1.819738913 1 17.15524249 -8.081737137 19.70253596 0.999999999 1.839833089 0.320586917 0.359715868 6469.182246 1559382.258 0.340064305 0.087804226 8.28E-09 8.081737137 0.839833089 RTQS(ph)SLTVSEVLTR ddPTM_HeLa_A486_30min_R1 2 RTQSSLTVSEVLTR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RT(0.347)QS(0.646)S(0.007)LTVSEVLTR;RT(0.004)QS(0.748)S(0.248)LTVSEVLTR ; 175.02 9.43E-13 357398000 147429 157756 152540 66157 233307 134781 199996 198475 107143 146048 TRUE FALSE FALSE 137094.9884 145254.84 211607.5732 154016.8394 204043.4606 118153.0906 149954.8855 153286.5752 116430.2415 109476.6302 1.252276291 1.326811391 1.932901778 1.406846732 1.863808378 1.079253996 1.369743343 1.400176229 1.063516856 1 16.74026341 -6.28047477 24.86591469 1.219249426 1.556360786 0.383569068 0.234760857 936.0100867 1222705.221 0.082892932 0.073224609 5.24E-07 6.28047477 0.33711136 RTQSS(ph)LTVSEVLTR ddPTM_HeLa_A485_30min_R1 1 RTQSSLTVSEVLTR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RT(0.014)QS(0.308)S(0.678)LTVSEVLTR 188.09 8.14E-18 394820000 33659 54749 49052 27088 66882 50778 61531 83218 43798 39791 TRUE FALSE FALSE 41146.32843 61151.4193 67198.37602 28567.74885 60222.99324 53436.65756 48384.39919 62808.65502 52587.85686 29871.836 1.377428841 2.04712624 2.249556272 0.956343924 2.016045925 1.788864185 1.619733022 2.102604441 1.760449437 1 14.86649829 -8.072827127 21.33832517 0.999999997 1.781682172 0.287047235 0.363065736 12336.94878 3614718.389 0.34080021 0.087994236 8.46E-09 8.072827127 0.781682175 RTQSS(ph)LTVSEVLTR ddPTM_HeLa_A486_30min_R1 1 RTQSSLTVSEVLTR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RTQS(0.155)S(0.844)LTVSEVLTR 166.53 3.29E-12 288880000 98629 108980 106540 48775 156310 85561 127510 139250 72334 107900 TRUE FALSE FALSE 91715.61642 100344.0279 147795.1412 113550.665 136704.1423 75005.35374 95605.64934 107545.8148 78603.96936 80881.13769 1.133955568 1.240635713 1.827312838 1.403920224 1.690185699 0.927352852 1.182051243 1.329677325 0.971845496 1 16.30351567 -6.265770904 24.99214525 1.109031836 1.464438828 0.431451668 0.215253422 407.5397151 2351425.804 0.076933105 0.070249009 5.42E-07 6.265770904 0.355406992 RTS(ph)DPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK ddPTM_HeLa_A486_30min_R1 1 RTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 35 1 H7C3A2;Q8NHH9-2;Q8NHH9 H7C3A2 ATL2 Atlastin-2 1 0 RT(0.386)S(0.613)DPS(0.001)AAVNHVSSTTSLGENYEDDDLVNSDEVMK 280.03 1.12E-78 281420000 42727 40639 32215 6462.2 43449 35087 38011 21133 42237 18025 TRUE FALSE FALSE 39732.05794 37418.61764 44689.51075 15044.32818 37999.22127 30758.32268 28500.24576 16321.47723 45898.13717 13511.42268 2.940627267 2.769406193 3.307535544 1.113452561 2.812377511 2.276468098 2.109344548 1.207976215 3.396987739 1 13.72189197 -1 0.06538707 1.43E-13 7.393338657 0.255391658 0.744237423 409.9000409 1.994643579 42.1946304 282.8429833 0.1 1 7.393338657 RTS(ph)FLEGTLR ddPTM_HeLa_A485_30min_R1 1 RTSFLEGTLR 10 1 A0A0A0MQX1;Q9HD67;E9PEW5;Q9HD67-3 A0A0A0MQX1 MYO10 Unconventional myosin-X 1 0 RT(0.129)S(0.871)FLEGTLR 118.13 0.00021102 67349000 41873 39086 41439 35498 37592 38259 38933 40360 45022 60713 TRUE FALSE FALSE 51187.50439 43656.7677 56769.01052 37437.16585 33849.20849 40262.18208 30614.6465 30461.64672 54057.50243 45578.36644 1.123065796 0.957839675 1.245525344 0.821380159 0.742659536 0.883361674 0.671692491 0.66833564 1.186034223 1 15.4760616 -5.283589968 23.99044331 0.82860165 1.093713203 0.3366434 0.161322072 487.9933429 528525.601 0.044347575 0.065849991 5.20E-06 5.283589968 0.265111552 RTS(ph)FLEGTLR ddPTM_HeLa_A486_30min_R1 1 RTSFLEGTLR 10 1 A0A0A0MQX1;Q9HD67;E9PEW5;Q9HD67-3 A0A0A0MQX1 MYO10 Unconventional myosin-X 1 0 RT(0.19)S(0.81)FLEGTLR 76.728 0.0057092 82321000 21204 19323 19102 6945.7 20599 18375 21044 22365 17179 22685 TRUE FALSE FALSE 19717.7091 17791.77511 26498.80597 16169.94062 18015.28134 16108.07932 15778.56862 17272.97772 18668.08955 17004.52835 1.159556366 1.046296301 1.558338193 0.950919678 1.059440225 0.947281747 0.927903926 1.015786935 1.097830482 1 14.05363137 RTS(ph)FSFQK ddPTM_HeLa_A485_30min_R1 3 RTSFSFQK 8 1 H0Y7F8;Q9BPZ7-4;Q9BPZ7-3;Q9BPZ7-2;Q9BPZ7 H0Y7F8 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 1 0 RT(0.246)S(0.754)FSFQK;RT(0.159)S(0.841)FSFQK;RT(0.343)S(0.657)FSFQK ;; 174.57 9.28E-06 5242400000 1927030 2244350 1912010 1966140 2338440 1960820 2352610 2489820 1624120 2249400 TRUE FALSE FALSE 2355691.175 2506807.209 2619342.064 2073545.25 2105616.703 2063485.503 1849955.654 1879187.741 1950065.987 1688665.977 1.395001266 1.484489676 1.551130952 1.227919125 1.246911308 1.22196191 1.095513073 1.11282383 1.154796753 1 20.68745256 -5.738531778 0.94019939 1.101284967 1.489249905 0.809259919 0.073368358 0.247004076 0.468486014 0.035588899 0.058349755 1.83E-06 5.738531778 0.387964938 RTS(ph)FSFQK ddPTM_HeLa_A486_30min_R1 4 RTSFSFQK 8 1 H0Y7F8;Q9BPZ7-4;Q9BPZ7-3;Q9BPZ7-2;Q9BPZ7 H0Y7F8 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 1 0 RT(0.026)S(0.974)FSFQK;RT(0.026)S(0.974)FSFQK;RT(0.182)S(0.818)FSFQK;RT(0.006)S(0.994)FSFQK ;;; 176.62 7.04E-06 7610720000 4240510 3854070 2732040 1449410 3668490 3687300 4073090 4329000 3175390 3598510 TRUE FALSE FALSE 3943272.147 3548659.457 3789959.055 3374299.729 3208353.777 3232398.416 3053959.801 3343381.201 3450635.362 2697419.674 1.461868239 1.315575582 1.405031294 1.250936131 1.189415873 1.198329814 1.132178219 1.23947387 1.279235632 1 21.36314857 -1 0.154104198 1.037756936 2.521447053 0.695745125 0.069077745 41.35894059 0.415947807 0.239894734 13.8064839 0.1 1 1.483690117 RTS(ph)IHDFLTK ddPTM_HeLa_A485_30min_R1 1 RTSIHDFLTK 10 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 RT(0.399)S(0.601)IHDFLTK 80.706 0.0042246 554860000 361380 378480 299080 381740 444690 406530 546150 579550 386150 507590 TRUE FALSE FALSE 441767.7343 422739.9437 409722.1378 402593.4896 400415.1022 427815.2822 429460.5909 437414.4538 463646.763 381057.1545 1.159321454 1.109387237 1.075224892 1.056517336 1.050800641 1.122706337 1.127024085 1.147897234 1.216738113 1 18.53964788 -6.486380851 13.44174314 1.133760993 1.08841573 0.061619057 0.057529343 5.7843127 2128.940809 0.02011088 0.017652169 3.26E-07 6.486380851 -0.045345262 RTS(ph)IHDFLTK ddPTM_HeLa_A486_30min_R1 1 RTSIHDFLTK 10 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 RT(0.4)S(0.6)IHDFLTK 93.823 0.0015618 522810000 403210 452660 289660 169330 420580 416820 483990 506120 315110 493240 TRUE FALSE FALSE 374947.0612 416789.573 401824.1094 394208.7975 367826.9346 365396.9863 362890.5829 390887.5245 342423.9885 369729.4935 1.014111851 1.12728246 1.086805668 1.066208686 0.994854187 0.988281954 0.981502934 1.057225705 0.926147344 1 18.49611061 -5.71919868 4.059711788 0.993037029 1.080423267 0.512083868 0.039313718 0.168987088 5.885106355 0.011559069 0.01464687 1.91E-06 5.71919868 0.087386238 RTS(ph)LPCIPR ddPTM_HeLa_A485_30min_R1 6 RTSLPCIPR 9 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RT(0.148)S(0.852)LPCIPR;RT(0.051)S(0.949)LPCIPR;RT(0.051)S(0.949)LPCIPR;RTS(1)LPCIPR;RT(0.039)S(0.961)LPCIPR;RT(0.018)S(0.982)LPCIPR ;;;;; 148.96 4.61E-05 10362840000 515298 654828 731871 549744 850338 651285 794024 876842 718768 790287 TRUE FALSE FALSE 629924.2623 731404.4384 1002620.539 579775.1227 765675.363 685385.2755 624374.2858 661795.1247 863018.1447 593282.9951 1.061760185 1.232808701 1.689953272 0.977231991 1.290573587 1.155241733 1.052405498 1.115479679 1.454648375 1 19.17836091 RTS(ph)LPCIPR ddPTM_HeLa_A486_30min_R1 5 RTSLPCIPR 9 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RT(0.036)S(0.964)LPCIPR;RT(0.033)S(0.967)LPCIPR;RT(0.003)S(0.997)LPCIPR;RT(0.029)S(0.971)LPCIPR;RT(0.09)S(0.91)LPCIPR ;;;; 142.76 6.74E-05 9062640000 714873 752065 692077 231809 888812 719411 814869 882320 682357 820350 TRUE FALSE FALSE 664764.0943 692468.6304 960067.7489 539663.067 777328.9111 630657.3853 610980.1574 681434.9969 741504.2542 614929.0204 1.081041994 1.12609522 1.561265962 0.877602209 1.264095343 1.025577529 0.993578343 1.108152281 1.205837145 1 19.23006037 -5.292756575 24.99967176 1.075663874 1.24313088 0.228041137 0.157761631 1065.929064 850900.3065 0.043757357 0.064909472 5.10E-06 5.292756575 0.167467005 RTS(ph)MGGTQQQFVEGVR ddPTM_HeLa_A486_30min_R1 1 RTSMGGTQQQFVEGVR 16 1 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y6G0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 RT(0.282)S(0.718)MGGTQQQFVEGVR 228.65 2.11E-34 721760000 98547 105670 118870 39532 156980 140790 164330 165460 119660 177250 TRUE FALSE FALSE 91639.3642 97296.32436 164899.6474 92032.49384 137290.1046 123420.7612 123212.8959 127788.37 130032.2251 132865.4463 0.689715549 0.732292158 1.241102574 0.692674404 1.033301799 0.928915415 0.927350935 0.961787835 0.978676012 1 17.01960643 -4.557027685 24.99839162 0.960295173 0.700358961 0.402428205 0.126452952 141.3614729 103481.793 0.029626894 0.078386148 2.77E-05 4.557027685 -0.259936213 RTS(ph)NERPGSGQGQGR ddPTM_HeLa_A485_30min_R1 2 RTSNERPGSGQGQGR 15 2 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RT(0.366)S(0.634)NERPGSGQGQGR;RT(0.243)S(0.757)NERPGSGQGQGR ; 117.29 8.60E-05 9268600000 971310 1491130 1262460 978130 1658350 1263280 1537950 1825550 1328610 1296090 TRUE FALSE FALSE 1187374.559 1665504.682 1729496.489 1031562.765 1493238.851 1329423.387 1209354.419 1377831 1595249.84 972998.6158 1.220325023 1.711723589 1.777491213 1.060189345 1.534677262 1.366315805 1.24291484 1.416066763 1.639519126 1 19.89207823 -5.246860038 24.99473308 1.347459322 1.584034276 0.190009592 0.229261477 1393.792833 2389505.963 0.060518235 0.104225741 5.66E-06 5.246860038 0.236574954 RTS(ph)NERPGSGQGQGR ddPTM_HeLa_A486_30min_R1 1 RTSNERPGSGQGQGR 15 2 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RT(0.432)S(0.568)NERPGSGQGQGR 155.75 1.65E-08 3050500000 599980 650340 683780 289210 710810 636690 630380 745740 559150 589180 TRUE FALSE FALSE 557924.5003 598804.6899 948557.9283 673295.4959 621653.5818 558141.6612 472652.2565 575951.2814 607617.5722 441645.4931 1.263285846 1.355849203 2.147781293 1.524515718 1.407585024 1.263777554 1.070207358 1.304103156 1.375803856 1 18.75252926 -6.0169458 2.385919745 1.212542811 1.597078026 0.345661424 0.240539178 0.366809078 4.183190434 0.090091784 0.097263291 9.62E-07 6.0169458 0.384535215 RTS(ph)PQVLGSILK ddPTM_HeLa_A485_30min_R1 1 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 RT(0.347)S(0.653)PQVLGSILK 150.39 7.42E-08 202120000 321450 363150 328710 376530 490990 420230 516640 595260 381250 491130 TRUE FALSE FALSE 392955.4435 405617.2335 450313.5078 397098.8805 442105.3116 442232.593 406255.6434 449271.5517 457763.378 368700.3296 1.065785441 1.100127125 1.221353689 1.077023394 1.199091176 1.199436392 1.101858639 1.218527665 1.241559449 1 18.49208918 -4.569427652 8.211795941 1.163285082 1.074172115 0.146212708 0.072862398 0.351759651 55.25514015 0.017508192 0.046958114 2.70E-05 4.569427652 -0.089112967 RTS(ph)PQVLGSILK ddPTM_HeLa_A486_30min_R1 1 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 RT(0.423)S(0.577)PQVLGSILK 72.88 0.028215 1511800000 2591800 2855700 1924400 1079700 3219800 2639700 3257600 3374000 2286300 3048900 TRUE FALSE FALSE 2410128.204 2629403.932 2669579.217 2513596.165 2815942.661 2314040.653 2442514.025 2605813.854 2484478.325 2285435.595 1.054559669 1.150504498 1.168083329 1.099832422 1.232125144 1.012516239 1.068730193 1.14018258 1.087091813 1 21.12403773 -6.279273543 24.96735896 1.07090471 1.14076309 0.324919586 0.056389306 1142.383757 1599302.083 0.019710649 0.017419411 5.26E-07 6.279273543 0.06985838 RTS(ph)SEDNLYLAVLR ddPTM_HeLa_A485_30min_R1 1 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.123)S(0.587)S(0.29)EDNLYLAVLR 182.17 1.36E-17 2617000000 114600 181390 168270 93005 190860 149180 185370 210860 136340 145200 TRUE FALSE FALSE 140092.3746 202601.9826 230520.0753 98085.62765 171857.3082 156990.8341 145764.1852 159146.2544 163702.1874 109004.3122 1.285200299 1.858660254 2.114779412 0.899832545 1.57661018 1.440225904 1.337233199 1.45999962 1.501795517 1 16.73402568 -11.98356709 0.105766344 1.26E-11 1.860947382 0.20450264 0.30544864 164.6033465 1.869799174 43.90108134 5.158910462 1.04E-12 11.98356709 1.860947382 RTS(ph)SEDNLYLAVLR ddPTM_HeLa_A486_30min_R1 1 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.171)S(0.448)S(0.381)EDNLYLAVLR 211.16 1.42E-22 713500000 125590 152170 154540 56162 199360 116440 133570 157020 104000 127440 TRUE FALSE FALSE 116786.7895 140111.495 214382.0267 130747.9743 174354.4098 102074.8167 100149.3732 121269.9737 113014.8037 95528.1945 1.22253739 1.466703058 2.244175427 1.368684658 1.825161783 1.068530785 1.048375024 1.269467871 1.183051813 1 16.54363898 -6.270592739 24.79091864 1.126632434 1.636741673 0.473479813 0.269431209 552.1065273 1495318.546 0.095425997 0.085346336 5.36E-07 6.270592739 0.510109239 RTS(ph)SEQAVALPR ddPTM_HeLa_A485_30min_R1 1 RTSSEQAVALPR 12 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RT(0.149)S(0.836)S(0.015)EQAVALPR 150.39 7.42E-08 476360000 80686 110820 106860 80197 135800 116160 129350 140040 99919 111380 TRUE FALSE FALSE 98634.32234 123779.435 146391.9608 84577.95904 122279.2752 122241.958 101713.3158 105694.9704 119971.8268 83615.0158 1.179624514 1.480349358 1.750785543 1.011516391 1.462408086 1.461961788 1.216447965 1.26406686 1.434811985 1 16.35147443 -12.69803084 0.230888725 6.78E-09 1.412598303 0.234489409 0.194786072 121.9534029 2.100518918 57.79263443 0.344129905 2.00E-13 12.69803084 1.412598296 RTS(ph)SLDTITGPYLTGQWPR ddPTM_HeLa_A486_30min_R1 1 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RT(0.087)S(0.456)S(0.456)LDTITGPYLTGQWPR 211.71 2.50E-26 786880000 67319 58511 65614 23084 94636 49082 70635 66985 44254 68864 TRUE FALSE FALSE 62600.28574 53874.37527 91021.498 53740.7186 82765.87043 43026.76187 52961.3759 51733.97777 48089.97235 51620.00617 1.212713643 1.043672391 1.763298859 1.041083149 1.603368085 0.833528801 1.025985462 1.002207896 0.931615006 1 15.65564269 -6.27676299 24.92109136 0.963012799 1.324470168 0.428276612 0.216014275 780.6116451 1269520.33 0.072790225 0.06443204 5.29E-07 6.27676299 0.36145737 RTSS(ph)EDNLYLAVLR ddPTM_HeLa_A485_30min_R1 4 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.25)S(0.25)S(0.501)EDNLYLAVLR;RT(0.144)S(0.144)S(0.712)EDNLYLAVLR;RT(0.346)S(0.189)S(0.465)EDNLYLAVLR;RT(0.017)S(0.042)S(0.941)EDNLYLAVLR ;;; 212.72 9.04E-23 4242880000 398862 587870 605870 340150 764100 569540 620620 752060 497910 548991 TRUE FALSE FALSE 487587.4758 656616.2827 830006.5254 358731.5332 688023.5211 599360.2337 488019.467 567616.1058 597835.9699 412137.6471 1.18306949 1.593196563 2.013906109 0.870416803 1.669402264 1.454271984 1.184117662 1.377248863 1.45057355 1 18.65276673 -12.59434854 0.174293565 6.72E-15 1.539957673 0.160479431 0.293025425 138.5604639 2.058839329 50.47131941 1.042942856 2.54E-13 12.59434854 1.539957673 RTSS(ph)EDNLYLAVLR ddPTM_HeLa_A486_30min_R1 3 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.165)S(0.165)S(0.67)EDNLYLAVLR;RT(0.076)S(0.076)S(0.848)EDNLYLAVLR;RT(0.067)S(0.14)S(0.792)EDNLYLAVLR ;; 253.73 9.79E-42 3931610000 304196 334500 322020 140169 467799 277227 353177 361997 255800 313122 TRUE FALSE FALSE 282873.4313 307993.0018 446714.768 326320.5157 409123.2874 243025.5514 264808.3791 279578.1854 277972.95 234714.2131 1.205182368 1.312204309 1.90322845 1.390288689 1.743069931 1.03541046 1.128216206 1.191142972 1.184303866 1 17.84054568 -6.274622277 24.98503416 1.121036214 1.514869043 0.511800057 0.196557543 691.2497796 1310095.122 0.07037504 0.062421221 5.31E-07 6.274622277 0.393832828 RTSS(ph)LDTITGPYLTGQWPR ddPTM_HeLa_A486_30min_R1 1 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RT(0.011)S(0.049)S(0.94)LDT(0.001)ITGPYLTGQWPR 142.88 7.04E-08 140290000 154380 161880 150840 53201 229410 157950 174170 187540 118030 154370 TRUE FALSE FALSE 143558.7592 149052.0392 209249.2876 123854.6166 200635.2586 138463.7349 130590.8238 144841.236 128260.9354 115714.7472 1.240626304 1.288098905 1.808319965 1.07034427 1.733878036 1.196595406 1.128558174 1.251709393 1.108423416 1 16.82021321 -6.496258491 24.64015558 1.145923935 1.426051982 0.320011679 0.213311888 771.3874829 714010.6153 0.071702987 0.063041869 3.19E-07 6.496258491 0.280128047 RTSSTENK ddPTM_HeLa_A485_30min_R1 2 RTSSTENK 8 1 Q9Y2K7-5 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 0 0 ; ; 81.784 0.010752 1590100000 1137480 1278250 920130 1313880 1556360 1386140 1810430 1943350 1152820 1868060 FALSE FALSE TRUE 1390508.502 1427730.218 1260524.377 1385653.937 1401403.334 1458716.147 1423616.841 1466740.365 1384180.4 1402387.021 0.991529785 1.018071472 0.898842016 0.988068141 0.999298562 1.040166605 1.015138346 1.045888434 0.987017406 1 20.41945312 -5.835140298 2.972163166 1.020079345 0.971029376 0.280688637 0.032699936 0.319662284 5.716558087 0.010740491 0.012834494 1.46E-06 5.835140298 -0.049049969 RTSVLFSK(ac)K ddPTM_HeLa_A485_30min_R1 1 RTSVLFSKK 9 2 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 0 1 RTSVLFSK(1)K 119.27 0.0090378 21779000 35101 39542 35987 36670 45247 40154 42976 43550 31734 52072 FALSE TRUE FALSE 42909.09635 44166.09293 49300.08884 38673.18925 40742.04981 42256.40135 33793.82652 32869.29422 38102.72272 39091.40871 1.097660529 1.129815844 1.261148945 0.989301499 1.042225163 1.080963893 0.864482188 0.840831663 0.974708356 1 15.25456395 -6.105512125 0.99932178 0.914191875 1.14760926 0.53244168 0.080754819 0.40111581 0.858099417 0.044260322 0.047109411 7.84E-07 6.105512125 0.233417385 RTSVLFSK(ac)K ddPTM_HeLa_A486_30min_R1 1 RTSVLFSKK 9 2 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 0 1 RTSVLFSK(1)K 119.27 0.0090378 37488000 26303 28775 20232 9784.1 29880 24065 24867 26927 23586 29570 FALSE TRUE FALSE 24459.29553 26494.7642 28066.37223 22777.87926 26132.17178 21096.10497 18645.01358 20796.30991 25630.45347 22165.47953 1.103485963 1.195316536 1.266219943 1.027628535 1.178958107 0.951754955 0.841173481 0.938229641 1.156322986 1 14.43602695 -6.263233825 24.95202362 0.965115388 1.155777352 0.469361352 0.09353876 139.2923556 1936868.879 0.033100838 0.030720266 5.45E-07 6.263233825 0.190661964 RTSVPS(ph)PEQPQPYR ddPTM_HeLa_A485_30min_R1 2 RTSVPSPEQPQPYR 14 1 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 RTSVPS(0.999)PEQPQPYR;RT(0.011)S(0.011)VPS(0.978)PEQPQPYR ; 64.331 0.011339 580090000 391780 315120 269360 804970 456000 355250 589710 524630 307660 930470 TRUE FALSE FALSE 478930.1094 351970.5428 369007.473 848943.4728 410599.0389 373850.3407 463713.641 395963.6699 369404.54 698520.953 0.685634564 0.503879721 0.528269727 1.21534432 0.587812058 0.535202758 0.663850725 0.566860118 0.528838166 1 19.41394387 -10.50144919 3.072244833 1.010278732 0.648479291 0.221505792 0.198947207 124879696.7 144088357.7 10836404.25 0.050986459 3.15E-11 10.50144919 -0.36179944 RTSVPS(ph)PEQPQPYR ddPTM_HeLa_A486_30min_R1 1 RTSVPSPEQPQPYR 14 1 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 RT(0.023)S(0.023)VPS(0.955)PEQPQPYR 48.833 0.033257 212780000 213820 195270 126500 133400 172900 239990 311070 247380 167640 400590 TRUE FALSE FALSE 198832.3222 179796.094 175484.1878 310561.9417 151213.2698 210382.4738 233236.9958 191056.9743 182171.1702 300279.6566 0.662157152 0.598762154 0.584402519 1.034242363 0.503574806 0.700621801 0.776732591 0.636263463 0.606671701 1 18.19594721 -10.18304194 4.426954912 1.000076838 0.680731922 0.329276198 0.137757682 29214657.33 67200637.91 13228.10449 0.032614804 6.56E-11 10.18304194 -0.319344916 RTT(ph)PLSAEIR ddPTM_HeLa_A485_30min_R1 1 RTTPLSAEIR 10 1 A0A2R8Y568;A0A024RDL5;A0A2R8Y522;A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-5;Q8WXX7-2;Q8WXX7 A0A2R8Y568 AUTS2 Autism susceptibility gene 2 protein 1 0 RT(0.189)T(0.81)PLS(0.001)AEIR 72.705 0.0039481 0 34918 41362 43940 31044 44548 36332 45396 46047 36085 46103 TRUE FALSE FALSE 42685.38863 46198.9261 60195.2345 32739.85511 40112.6447 38234.28734 35696.77375 34753.90105 43326.92851 34610.37056 1.233312095 1.334828993 1.739225368 0.945955059 1.158977614 1.104706096 1.031389528 1.004147037 1.251848154 1 15.07891677 -5.281779838 24.99981059 1.074595443 1.425692891 0.568319154 0.145587575 574.9597121 706663.3568 0.040623076 0.060331669 5.23E-06 5.281779838 0.351097448 RTT(ph)TPPDSGVLFEGLGISTRPR ddPTM_HeLa_A485_30min_R1 1 RTTTPPDSGVLFEGLGISTRPR 22 2 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 RT(0.284)T(0.358)T(0.358)PPDSGVLFEGLGISTRPR 66.282 0.0097102 35890000 4387.4 5101.7 2372.8 6250.9 5700.2 4745.1 4653.1 7907.7 3200.8 6177.8 TRUE FALSE FALSE 5363.361994 5698.299436 3250.59746 6592.370839 5132.668073 4993.546099 3658.927173 5968.324176 3843.171201 4637.788154 1.15644825 1.22866747 0.700893907 1.421447168 1.106706021 1.076708537 0.78893797 1.286890211 0.828664672 1 12.17922121 -6.535333873 24.98802416 0.990429669 1.118845608 0.098073614 0.208475601 642.0752447 1288147.357 0.077051749 0.059721103 2.92E-07 6.535333873 0.128415939 RTT(ph)TPPDSGVLFEGLGISTRPR ddPTM_HeLa_A486_30min_R1 1 RTTTPPDSGVLFEGLGISTRPR 22 2 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 RT(0.096)T(0.452)T(0.452)PPDSGVLFEGLGISTRPR 102.57 0.00037823 200060000 22239 29271 24509 13268 30174 25395 21278 28434 17916 22115 TRUE FALSE FALSE 20680.16094 26951.45936 33999.54117 30888.57453 26389.29556 22262.0231 15954.01934 21960.19891 19468.97331 16577.26006 1.247501751 1.625809046 2.050974712 1.863310006 1.591897302 1.34292537 0.962403877 1.324718249 1.174438553 1 14.01691795 -6.325724238 2.656438632 1.143508342 1.715029119 0.601911915 0.214650458 0.211009441 2.929334405 0.0878859 0.078055358 4.72E-07 6.325724238 0.571520777 RTTT(ph)PPDSGVLFEGLGISTRPR ddPTM_HeLa_A485_30min_R1 2 RTTTPPDSGVLFEGLGISTRPR 22 2 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 RT(0.314)T(0.314)T(0.372)PPDSGVLFEGLGISTRPR;RT(0.323)T(0.323)T(0.355)PPDSGVLFEGLGISTRPR ; 112.8 0.00011064 414930000 32731 57725 50605 39027 50889 50843 63224 69343 48374 44081 TRUE FALSE FALSE 40011.89803 64475.43661 69325.89535 41158.94619 45822.31248 53505.06086 49715.67591 52336.52052 58082.21809 33092.41795 1.209095633 1.948344684 2.094917798 1.243757596 1.384677075 1.616837456 1.502328297 1.581526034 1.755151835 1 15.01421309 -10.22948737 4.140105839 0.999631422 1.599479358 0.303145042 0.269543982 37632586.35 46492375.66 106925.5151 0.067176107 5.90E-11 10.22948737 0.599847935 RTYS(ph)DEANQMR ddPTM_HeLa_A485_30min_R1 1 RTYSDEANQMR 11 1 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 RT(0.119)YS(0.881)DEANQMR 142.19 6.57E-07 353090000 101890 165880 189070 83943 181540 146950 163380 219180 165230 117020 TRUE FALSE FALSE 124555.079 185278.223 259014.8609 88528.59354 163465.2402 154644.0748 128472.5283 165425.7613 198390.1454 87849.06759 1.417830404 2.109051674 2.948407626 1.007735153 1.860750998 1.76033826 1.462423357 1.883067924 2.258306785 1 16.42273935 -5.272172555 24.9985101 1.652685379 2.153492127 0.198930166 0.502787901 1245.158148 2900080.532 0.140801938 0.21119549 5.34E-06 5.272172555 0.500806748 RVAFISLS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 RVAFISLSPVR 11 1 Q6ZU65-2;Q6ZU65 Q6ZU65-2 UBN2 Ubinuclein-2 1 0 RVAFISLS(1)PVR;RVAFISLS(1)PVR ; 173.36 1.28E-08 832520000 437580 775690 673190 390760 764300 694320 720350 892640 552580 555690 TRUE FALSE FALSE 534918.1614 866400.1979 922230.9948 412106.2293 688203.6084 730673.5216 566441.3378 673718.6404 663477.7374 417166.7097 1.282264737 2.076868019 2.210701317 0.987869405 1.649708839 1.751514453 1.357829675 1.614986586 1.59043788 1 18.67026451 -11.71473405 0.183005754 1.76E-11 1.785704352 0.232184258 0.339096414 77.17764007 1.600026483 32.26934076 1.151531408 1.93E-12 11.71473405 1.785704352 RVAFISLS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 RVAFISLSPVR 11 1 Q6ZU65-2;Q6ZU65 Q6ZU65-2 UBN2 Ubinuclein-2 1 0 RVAFIS(0.001)LS(0.999)PVR;RVAFISLS(1)PVR ; 189.1 5.64E-11 901860000 622220 659660 687030 262840 865770 563760 730350 750520 556240 699530 TRUE FALSE FALSE 578605.5911 607386.1392 953066.4153 611904.8032 757177.0536 494209.0231 547608.7051 579642.9797 604455.3311 524363.1348 1.10344445 1.158331124 1.817569451 1.166948556 1.443993682 0.942493837 1.044331054 1.105422829 1.152741852 1 19.00020674 -6.259757494 24.98319663 1.05529516 1.345206165 0.350676954 0.196454425 181.8536819 2701315.757 0.067685298 0.064319259 5.50E-07 6.259757494 0.289911005 RVAIFIEK ddPTM_HeLa_A485_30min_R1 1 RVAIFIEK 8 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 0 126.07 0.0012575 33946000 48388 63169 51138 51108 67184 73621 78257 99041 50815 73849 FALSE FALSE TRUE 59151.74366 70556.06505 70056.07423 53899.90063 60494.92506 77475.68172 61536.75265 74751.03946 61013.1044 55439.80339 1.066954427 1.272660809 1.263642184 0.972223878 1.091182172 1.397473962 1.109974222 1.348328004 1.100528874 1 15.75863452 -8.001764394 24.98431413 0.999999967 1.191354163 0.186270022 0.126139996 85.30550098 1207971.563 0.121176669 0.031287681 9.96E-09 8.001764394 0.191354197 RVALS(ph)DDETKETENMR ddPTM_HeLa_A485_30min_R1 1 RVALSDDETKETENMR 16 2 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 RVALS(0.996)DDET(0.004)KETENMR 148.91 2.60E-08 506980000 74409 104700 74261 100450 128220 127970 170220 236120 90401 148770 TRUE FALSE FALSE 90961.02534 116943.7542 101733.2342 105937.3291 115453.9666 134670.3113 133851.1064 178211.1998 108543.6515 111684.3769 0.814447176 1.047091433 0.91089942 0.948542062 1.033752166 1.205811547 1.198476547 1.59566812 0.971878561 1 16.76906786 -6.148902108 2.10171187 1.239325031 0.9358226 0.341265969 0.168877585 0.327190437 2.844763874 0.061958338 0.061468072 7.10E-07 6.148902108 -0.303502432 RVAS(ph)SPAPPEGPSHPR ddPTM_HeLa_A485_30min_R1 1 RVASSPAPPEGPSHPR 16 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 RVAS(0.5)S(0.5)PAPPEGPSHPR 54.253 0.013728 0 33705 49218 56105 26082 52062 47366 48576 56908 55763 47167 TRUE FALSE FALSE 41202.56097 54973.61696 76860.57422 27506.79362 46878.52448 49846.01052 38197.34077 42951.22377 66954.12261 35409.13494 1.163613882 1.552526404 2.170642529 0.776827608 1.32391047 1.407716133 1.078742557 1.212998393 1.890871458 1 15.11183398 -5.268355734 24.99925506 1.25402367 1.621287487 0.197552761 0.357031609 924.9393452 3343205.623 0.099903233 0.151848231 5.39E-06 5.268355734 0.367263817 RVAS(ph)SPAPPEGPSHPR ddPTM_HeLa_A486_30min_R1 2 RVASSPAPPEGPSHPR 16 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 RVAS(0.5)S(0.5)PAPPEGPSHPR;RVAS(0.5)S(0.5)PAPPEGPSHPR ; 80.303 0.0020198 129380000 74188 83021 91697 26329 101600 76367 85352 81397 71227 82604 TRUE FALSE FALSE 68987.80431 76442.1136 127204.5341 61295.24259 88856.38062 66945.61598 63996.02684 62864.67998 77401.01371 61919.42074 1.114154549 1.234541808 2.05435601 0.989919509 1.435032492 1.081173163 1.033537234 1.015265958 1.250028065 1 15.91810435 -6.139903432 1.586090678 1.067785283 1.402095247 0.203486258 0.275368061 0.618544094 3.115474557 0.115529518 0.115131474 7.25E-07 6.139903432 0.334309964 RVASGPSPGEGIS(ph)PQSAQAPQAPGDNHVVPVLR ddPTM_HeLa_A485_30min_R1 1 RVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR 33 1 Q14764 Q14764 MVP Major vault protein 1 0 RVAS(0.08)GPS(0.028)PGEGIS(0.839)PQS(0.053)AQAPQAPGDNHVVPVLR 65.938 0.0030337 240860000 42995 45969 31696 64313 50165 56258 88510 88026 32294 92455 TRUE FALSE FALSE 52559.08942 51344.67467 43421.66938 67826.25634 45170.39646 59203.58189 69599.11544 66437.48548 38775.10958 69407.67001 0.757251892 0.739755054 0.625603329 0.977215578 0.650798341 0.852983278 1.002758275 0.957206682 0.558657416 1 16.08280748 -6.501462402 23.67965112 0.8834868 0.754911382 0.152821961 0.146957207 767.0653765 848132.2951 0.051249203 0.044708379 3.15E-07 6.501462402 -0.128575418 RVEHHDHAVVSGR ddPTM_HeLa_A485_30min_R1 3 RVEHHDHAVVSGR 13 1 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 0 0 ;; ;; 123.29 4.66E-05 77965200 39637.8 53742.7 48062.7 40623.3 44816 38607.7 18641.4 58468.9 42542.1 68860.7 FALSE FALSE TRUE 48455.09186 60027.44127 65843.09279 42842.44802 40353.96168 40629.13947 14658.5126 44129.3106 51079.90925 51694.99478 0.937326565 1.161184782 1.273684098 0.828754277 0.780616419 0.785939522 0.283557676 0.853647646 0.988101643 1 15.65773698 -5.40436487 5.08864398 0.754234006 1.125677611 0.363152799 0.201942073 0.235127171 8.829591184 0.059863797 0.0896051 3.94E-06 5.40436487 0.371443605 RVEHHDHAVVSGR ddPTM_HeLa_A486_30min_R1 1 RVEHHDHAVVSGR 13 1 O95831-3;O95831;E9PMA0;O95831-5;O95831-2 O95831-3 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 0 0 69.602 0.015255 17525000 16375 14010 13257 3450.8 21175 12798 8819.2 9828.5 6990.5 8355.1 FALSE FALSE TRUE 15227.19706 12899.79658 18390.46543 8033.636794 18519.03405 11219.11288 6612.54288 7590.765105 7596.442168 6262.928577 2.431322164 2.0597068 2.936400313 1.28272847 2.956928827 1.791352519 1.055822815 1.212015275 1.212921731 1 12.61262171 -6.577017775 4.247906507 1.147185453 2.302366628 0.618869213 0.44720611 0.14149843 5.342057851 0.165413208 0.128003457 2.65E-07 6.577017775 1.155181175 RVEIQMPKPAEAPTAPS(ph)PAQTLENSEPAPVSQLQSR ddPTM_HeLa_A485_30min_R1 1 RVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSR 36 2 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7EJ51;Q9UHD8-3 Q9UHD8-7 9-Sep Septin-9 1 0 RVEIQMPKPAEAPT(0.008)APS(0.985)PAQT(0.008)LENSEPAPVSQLQSR 159.74 1.11E-11 176320000 60427 83532 62588 55941 86707 89179 100760 124460 61268 89920 TRUE FALSE FALSE 73868.77768 93300.34077 85741.9057 58996.91518 78074.14663 93848.27454 79231.80287 93935.98985 73563.92562 67504.59885 1.094277707 1.382133104 1.270163917 0.873968829 1.156575225 1.390250089 1.17372452 1.391549486 1.089761688 1 16.04269817 -7.993945062 24.70814399 0.999999936 1.216439251 0.182829001 0.151272032 177.8698499 725821.115 0.150039293 0.038739979 1.01E-08 7.993945062 0.216439314 RVEIQMPKPAEAPTAPS(ph)PAQTLENSEPAPVSQLQSR ddPTM_HeLa_A486_30min_R1 1 RVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSR 36 2 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7EJ51;Q9UHD8-3 Q9UHD8-7 9-Sep Septin-9 1 0 RVEIQMPKPAEAPT(0.002)APS(0.998)PAQTLENSEPAPVSQLQSR 137.46 3.59E-07 144640000 45896 43711 31647 11033 54231 37777 43750 47539 35990 45265 TRUE FALSE FALSE 42678.92741 40247.18117 43901.56594 25685.38158 47428.8423 33116.45783 32803.28726 36715.40747 39109.64218 33930.34937 1.257839315 1.18617055 1.293873088 0.757003156 1.39782947 0.976012875 0.966783068 1.082081622 1.152644842 1 15.05028866 RVES(ph)EES(ph)GDEEGKK ddPTM_HeLa_A485_30min_R1 3 RVESEESGDEEGKK 14 2 C9JRC4;B5MBZ8;Q15435-3;Q15435;C9JD73;H7C118 C9JRC4;H7C118 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 0 RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK ;; 117.23 0.00051937 3232260000 6440700 3323350 2566370 16564500 5704600 4216600 8702900 4817600 4090350 20720300 TRUE FALSE FALSE 7873411.495 3711986.873 3515777.059 17469376.69 5136629.994 4437374.656 6843454.319 3636076.046 4911245.726 15555110.54 0.506162362 0.238634554 0.226020706 1.123063488 0.330221375 0.28526796 0.439948935 0.233754433 0.315731972 1 23.89088531 -10.71984033 4.848153272 1.025815041 0.410980259 0.32664609 0.253708736 0.069748418 0.004030541 0.242029983 0.060918978 1.91E-11 10.71984033 -0.614834782 RVES(ph)EES(ph)GDEEGKK ddPTM_HeLa_A486_30min_R1 6 RVESEESGDEEGKK 14 2 C9JRC4;B5MBZ8;Q15435-3;Q15435;C9JD73;H7C118 C9JRC4;H7C118 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 0 RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK;RVES(1)EES(1)GDEEGKK ;;;;; 124.69 0.00011022 7575390000 9886390 9590530 2925650 10001190 6964880 14487490 18122800 15803940 7076200 24899500 TRUE FALSE FALSE 9193405.114 8830541.475 4058540.032 23283275.75 6091279.805 12700170.78 13588283.76 12205727.86 7689570.713 18664503.13 0.492560935 0.473119558 0.21744699 1.247462929 0.326356387 0.680445158 0.728028154 0.653954074 0.411989039 1 24.15379377 -14 0.198679654 2.750862457 0.525764676 0.169648291 0.270906537 262.41102 2.592778279 184.0031002 0.6515375 1.00E-14 14 -2.22509778 RVES(ph)EES(ph)GDEEGKKHSSGIVADLSEQSLK ddPTM_HeLa_A486_30min_R1 2 RVESEESGDEEGKKHSSGIVADLSEQSLK 29 3 C9JRC4;B5MBZ8;Q15435-3;Q15435;C9JD73;H7C118 C9JRC4;H7C118 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 0 RVES(0.739)EES(0.777)GDEEGKKHS(0.248)S(0.236)GIVADLSEQSLK;RVES(0.688)EES(0.732)GDEEGKKHS(0.297)S(0.282)GIVADLS(0.001)EQSLK ; 120.58 2.14E-05 466680000 721880 584530 232660 88131 479930 556770 768470 647250 522480 330620 TRUE FALSE FALSE 671279.9398 538209.714 322752.1829 205173.4219 419732.7042 488081.3782 576190.678 499885.3044 567768.9871 247830.6 2.708624116 2.17168386 1.302309654 0.827877679 1.693627438 1.969415311 2.32493759 2.017044321 2.290955947 1 17.9189948 -6.282193202 6.095681185 2.011004903 1.689227773 0.008008078 0.579968947 0.593838186 85.74872246 0.214941542 0.195320892 5.22E-07 6.282193202 -0.32177713 RVESEES(ph)GDEEGKK ddPTM_HeLa_A485_30min_R1 1 RVESEESGDEEGKK 14 2 C9JRC4;B5MBZ8;Q15435-3;Q15435;C9JD73;H7C118 C9JRC4;H7C118 PPP1R7 Protein phosphatase 1 regulatory subunit 7 1 0 RVES(0.11)EES(0.89)GDEEGKK 104.89 0.00058216 0 58685 36647 30453 108890 60325 45742 72787 57563 47125 146730 TRUE FALSE FALSE 71739.27579 40932.54786 41718.83196 114838.385 54318.83119 48136.98039 57235.46283 43445.58399 56582.55524 110152.9114 0.651269902 0.371597513 0.378735627 1.042536085 0.493122066 0.437001435 0.519600092 0.394411582 0.513672808 1 16.7491481 -10.3481635 2.924821252 1.005781369 0.53067193 0.355998445 0.188175634 16121002.91 19772471.94 804562.8799 0.049235168 4.49E-11 10.3481635 -0.475109439 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_HeLa_A485_30min_R1 5 RVGDPPQPLPEEPMEVQGAERASPEPQR 28 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR ;;;; 189.55 6.50E-21 11865980000 1088376 1734296 1906417 1219370 1794211 1597634 1709804 1730848 1685803 1765035 TRUE FALSE FALSE 1330481.486 1937106.831 2611679.981 1285981.095 1615573.053 1681283.646 1344490.408 1306354.814 2024128.199 1325044.258 1.004103432 1.461918589 1.971013395 0.970519353 1.219259692 1.268850936 1.014675849 0.985895231 1.527592899 1 20.33760912 -5.329012084 24.99999149 1.143711003 1.477326562 0.247646906 0.269970902 249.2348988 92209.07876 0.076086258 0.112854178 4.69E-06 5.329012084 0.333615559 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_HeLa_A486_30min_R1 6 RVGDPPQPLPEEPMEVQGAERASPEPQR 28 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR ;;;;; 199.03 1.07E-28 9925020000 1632508 1676509 1698745 600921 2007553 1518732 1802633 1911284 1462790 1791547 TRUE FALSE FALSE 1518077.619 1543656.321 2356544.558 1398974.457 1755746.983 1331366.287 1351595.157 1476126.356 1589585.815 1342931.97 1.130420344 1.149467252 1.754775827 1.041731441 1.307398306 0.991387737 1.00645095 1.099181782 1.183668161 1 20.35695479 -5.975874616 1.852136555 1.063359935 1.306302612 0.230406122 0.190572277 0.521187903 3.623681372 0.071580791 0.080188013 1.06E-06 5.975874616 0.242942678 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 6 RVGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 45 3 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 0 RVGDPPQPLPEEPMEVQGAERAS(0.997)PEPQRENAS(0.91)PAPGT(0.043)T(0.041)AEEAMS(0.008)R;RVGDPPQPLPEEPMEVQGAERAS(0.981)PEPQRENAS(0.951)PAPGT(0.026)T(0.026)AEEAMS(0.016)R;RVGDPPQPLPEEPMEVQGAERAS(0.982)PEPQRENAS(0.945)PAPGT(0.025)T(0.025)AEEAMS(0.023)R;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.872)PAPGT(0.061)T(0.064)AEEAMS(0.003)R;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.98)PAPGT(0.01)T(0.009)AEEAMSR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.884)PAPGT(0.083)T(0.03)AEEAMS(0.003)R ;;;;; 122.57 2.32E-08 6008910000 210268.4 447382 441279 257476.7 606699 505515.6 600066 812280 449389 412183.4 TRUE FALSE FALSE 257041.8802 499699.4332 604526.4653 271542.0002 546293.9173 531983.6151 471856.997 613067.0564 539577.2503 309433.6641 0.830684925 1.614883871 1.953654484 0.877545115 1.765463751 1.719216998 1.524905179 1.981255201 1.743757428 1 18.23927063 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A486_30min_R1 5 RVGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 45 3 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 0 RVGDPPQPLPEEPMEVQGAERAS(0.998)PEPQRENAS(0.935)PAPGT(0.025)T(0.024)AEEAMS(0.019)R;RVGDPPQPLPEEPMEVQGAERAS(0.999)PEPQRENAS(0.53)PAPGT(0.227)T(0.213)AEEAMS(0.032)R;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.995)PAPGT(0.003)T(0.002)AEEAMSR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.995)PAPGT(0.001)T(0.002)AEEAMS(0.002)R;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.991)PAPGT(0.003)T(0.003)AEEAMS(0.003)R ;;;; 96.521 7.96E-06 2468928000 310473 334785 387880 140821.3 580248 329338 459913 485942 281691 365573 TRUE FALSE FALSE 288710.446 308255.4173 538077.5238 327839.1031 507467.8852 288707.626 344837.9029 375303.6146 306108.2027 274031.1413 1.053568016 1.124891922 1.963563415 1.196357106 1.851862102 1.053557726 1.258389471 1.369565564 1.117056263 1 18.06398033 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 2 RVGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 45 3 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 RVGDPPQPLPEEPMEVQGAERAS(0.997)PEPQRENAS(0.003)PAPGTTAEEAMSR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENASPAPGTTAEEAMSR ; 217.37 7.96E-41 2458800000 137717 243230 209982 82850 374140 295570 341840 494790 257760 181767 TRUE FALSE FALSE 168351.6715 271673.6327 287663.0799 87375.88571 336889.3079 311045.5882 268803.0914 373441.9767 309490.0677 136455.8321 1.233744787 1.990927237 2.108103959 0.640323571 2.468852396 2.279459833 1.969890824 2.736724191 2.26806039 1 17.05807453 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_HeLa_A486_30min_R1 3 RVGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 45 3 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 RVGDPPQPLPEEPMEVQGAERAS(0.996)PEPQRENAS(0.003)PAPGT(0.001)T(0.001)AEEAMSR;RVGDPPQPLPEEPMEVQGAERAS(0.999)PEPQRENAS(0.001)PAPGTTAEEAMSR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQRENASPAPGTTAEEAMSR ;; 153 7.45E-11 931640000 171390 180228.2 158504 89525.4 223991 171714 245635.8 207142 147622.8 228976.7 TRUE FALSE FALSE 159376.4461 165946.2611 219880.9937 208419.6556 195895.9601 150529.6725 184175.1248 159980.2885 160418.8632 171639.4439 0.928553731 0.966830568 1.281063307 1.214287642 1.141322505 0.877010954 1.073034965 0.932071818 0.934627027 1 17.38902161 -6.245816717 24.73275758 0.965958815 1.114353051 0.30199373 0.108377442 978.5321036 1549147.686 0.038990271 0.038856374 5.68E-07 6.245816717 0.148394236 RVGIVAWHPTAR ddPTM_HeLa_A485_30min_R1 2 RVGIVAWHPTAR 12 1 F8VV53;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;B4E3S0;Q9ULV4;Q9ULV4-2;Q9ULV4-3 F8VV53 CORO1C Coronin;Coronin-1C 0 0 ; ; 57.175 0.030645 29939000 7762 11653.2 11728.2 5505.5 14549.7 11224.5 14056.7 13022.1 10184 8786.8 FALSE FALSE TRUE 9488.630121 13015.94037 16066.94923 5806.251524 13101.08078 11812.19746 11053.37121 9828.409557 12227.83539 6596.412469 1.438453124 1.973184732 2.435710215 0.880213533 1.98609181 1.790700251 1.675664047 1.489962855 1.853709944 1 12.6874659 -11.38131465 0.305751649 2.66E-14 1.783599067 0.234662305 0.38948164 66.85876294 2.5700788 45.80360347 0.388672698 4.16E-12 11.38131465 1.783599067 RVGIVAWHPTAR ddPTM_HeLa_A486_30min_R1 2 RVGIVAWHPTAR 12 1 F8VV53;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;B4E3S0;Q9ULV4;Q9ULV4-2;Q9ULV4-3 F8VV53 CORO1C Coronin;Coronin-1C 0 0 ; ; 57.802 0.030153 21013000 8083.2 7559.5 6945.5 842.77 12122.3 7616.6 8051.4 8169.4 5394.8 6461.4 FALSE FALSE TRUE 7516.609422 6960.457689 9634.983607 1962.011151 10601.8081 6676.941332 6036.854561 6309.405957 5862.425608 4843.423383 1.551920786 1.43709462 1.989292045 0.405087682 2.188907981 1.378558264 1.246402407 1.302674876 1.210388839 1 12.2418114 -7.669050934 0.656279599 1.002728009 1.498883625 0.112353301 0.442412723 1.629133768 1.584840566 0.417828799 0.189078335 2.14E-08 7.669050934 0.496155615 RVGMADANS(ph)PPKPLSKPR ddPTM_HeLa_A485_30min_R1 2 RVGMADANSPPKPLSKPR 18 3 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 RVGMADANS(1)PPKPLSKPR;RVGMADANS(1)PPKPLSKPR ; 76.693 0.0044804 2103990000 554310 586190 401790 589770 722160 605440 810730 875310 466910 869000 TRUE FALSE FALSE 677614.3472 654739.8213 550428.8409 621987.6417 650259.2147 637139.9022 637510.9124 660638.8501 560614.5542 652374.2928 1.038689529 1.00362603 0.843731654 0.953421446 0.996757877 0.976647776 0.977216484 1.012668429 0.85934495 1 19.31534041 -4.533871745 24.99588228 0.954114519 1.029923724 0.213901863 0.054439792 276.5061075 628719.1147 0.013874754 0.036788812 2.93E-05 4.533871745 0.075809205 RVGMADANS(ph)PPKPLSKPR ddPTM_HeLa_A486_30min_R1 2 RVGMADANSPPKPLSKPR 18 3 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 RVGMADANS(1)PPKPLSKPR;RVGMADANS(0.999)PPKPLS(0.001)KPR ; 123.14 8.08E-05 3463100000 3048700 2276300 1153560 1303160 2102600 2827000 3371500 3130600 1853800 4048700 TRUE FALSE FALSE 2835001.874 2095917.698 1600249.325 3033822.338 1838872.302 2478233.483 2527915.04 2417830.721 2014488.877 3034879.167 0.93413995 0.690609933 0.527286009 0.999651772 0.605912855 0.816583905 0.832954098 0.79668105 0.66377894 1 21.53320765 -10.97786441 2.421838793 1.211241651 0.760955151 0.210314666 0.13767892 28089572.21 12256007.6 33224597.44 0.034131264 1.05E-11 10.97786441 -0.4502865 RVHMYDTVSQIK ddPTM_HeLa_A485_30min_R1 1 RVHMYDTVSQIK 12 1 Q5SQL3;Q86Z02-4;Q86Z02-3;Q86Z02-2;Q86Z02 Q5SQL3 HIPK1 Homeodomain-interacting protein kinase 1 0 0 111.63 0.00074232 61232000 94320 95630 85258 115750 159530 79899 153690 122140 67173 176350 FALSE FALSE TRUE 115301.1586 106813.0966 116798.4821 122073.1294 143646.6331 84082.38809 120852.876 92184.97349 80654.00495 132389.1905 0.870925777 0.806811313 0.88223579 0.922077769 1.085032944 0.635115207 0.912860601 0.696317979 0.60921896 1 17.01442581 -6.274777416 24.99039807 0.760607313 0.906243102 0.230721222 0.129312282 1201.644836 2251417.965 0.04491206 0.039832347 5.31E-07 6.274777416 0.145635789 RVHMYDTVSQIK ddPTM_HeLa_A486_30min_R1 2 RVHMYDTVSQIK 12 1 Q5SQL3;Q86Z02-4;Q86Z02-3;Q86Z02-2;Q86Z02 Q5SQL3 HIPK1 Homeodomain-interacting protein kinase 1 0 0 ; ; 103.43 0.0011534 111666000 194358 176835 103593 92181 176382 185332 257254 211508 143055 254323 FALSE FALSE TRUE 180734.5079 162821.9506 143706.9839 214602.0266 154258.5249 162467.6222 192886.3282 163352.2456 155455.1226 190638.8654 0.948046493 0.854085814 0.753817872 1.125699243 0.809166192 0.852227177 1.011789111 0.856867487 0.81544297 1 17.54048275 -6.566081875 0.007450865 1.801244648 3.40E-07 0.025989398 0.107521002 20694.71572 77.76109615 9257.315582 9535.08185 2.72E-07 6.566081875 -1.801244308 RVIGAK(ac)K ddPTM_HeLa_A485_30min_R1 1 RVIGAKK 7 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 1 RVIGAK(1)K 112.37 0.037387 287870000 75720 85778 82820 65538 88101 89006 106700 103410 81536 99545 FALSE TRUE FALSE 92563.65277 95808.99093 113458.5644 69118.17499 79329.3551 93666.21653 83902.67334 78048.53536 97899.52731 74730.26349 1.238636778 1.282064139 1.518241193 0.924902065 1.061542558 1.25339069 1.122740232 1.044403321 1.310038567 1 16.18940499 -5.26046409 24.99973811 1.109713715 1.339889038 0.438780668 0.12614533 87.81435517 2250927.981 0.034919358 0.056304535 5.49E-06 5.26046409 0.230175323 RVIGAK(ac)K ddPTM_HeLa_A486_30min_R1 2 RVIGAKK 7 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 1 ; RVIGAK(1)K;RVIGAK(1)K 125.25 0.017789 416830000 307330 275640 208639 86866 302860 270960 320080 294210 240480 340060 FALSE TRUE FALSE 285787.7541 253797.2825 289429.6083 202228.438 264872.4747 237531.7101 239992.5985 227224.8056 261325 254906.7626 1.121146223 0.995647506 1.135433228 0.793342773 1.039095519 0.931837617 0.941491689 0.891403599 1.025178765 1 17.95961012 -5.231451258 24.96756969 0.944619887 1.075232837 0.413303129 0.075125378 673.6327384 560853.7121 0.018951758 0.032820297 5.87E-06 5.231451258 0.130612951 RVIISAPSADAPMFVMGVNHEK ddPTM_HeLa_A485_30min_R1 6 RVIISAPSADAPMFVMGVNHEK 22 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;;; ;;;;; 356.9 3.93E-128 944987000 408009 471270 431635 450387 560387 555650 696458 712015 436696 636298 FALSE FALSE TRUE 498769.1944 526380.927 591314.7483 474990.5014 504592.9026 584742.9748 547654.0588 537392.2049 524336.8816 477680.6188 1.044147857 1.10195161 1.237887252 0.994368376 1.056339493 1.224129579 1.146485826 1.125003158 1.097672505 1 18.86568682 -8.186180976 3.581315308 1.000009392 1.118236592 0.189696712 0.071630894 2.14993382 38.96153119 0.070689153 0.01865435 6.51E-09 8.186180976 0.1182272 RVIISAPSADAPMFVMGVNHEK ddPTM_HeLa_A486_30min_R1 6 RVIISAPSADAPMFVMGVNHEK 22 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;;; ;;;;; 335.92 1.84E-109 931112000 613382 628885 482782 242150 771263 677190 819782 789794 629789 849137 FALSE FALSE TRUE 570387.0893 579049.8622 669728.1198 563737.4376 674524.0028 593645.183 614663.8728 609975.1473 684379.6176 636507.5682 0.896119886 0.909729736 1.052191919 0.885672796 1.059726603 0.932660054 0.965681955 0.958315624 1.075210495 1 19.27981814 -4.616270946 9.392121991 0.985319567 0.899551136 0.276248068 0.056688809 0.337367186 30.15842615 0.013476037 0.035773915 2.42E-05 4.616270946 -0.08576843 RVIISAPSADAPMFVMGVNHEKYDNSLK ddPTM_HeLa_A485_30min_R1 4 RVIISAPSADAPMFVMGVNHEKYDNSLK 28 2 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 313.91 2.26E-108 373666000 194272 328355 173814 164835 357381 485291 616299 1131944 212940 269041 FALSE FALSE TRUE 237487.1362 366753.2609 238115.0316 173839.5187 321798.8928 510700.0864 484621.684 854332.9592 255675.1048 201974.03 1.175830062 1.815843655 1.178938854 0.860702332 1.593268663 2.528543329 2.399425728 4.229914901 1.265881088 1 17.62381028 -6.171791037 3.785889163 2.497699287 1.286673267 0.227824022 0.852880372 0.295714541 7.898603341 0.28360792 0.281316146 6.73E-07 6.171791037 -1.211026019 RVIISAPSADAPMFVMGVNHEKYDNSLK ddPTM_HeLa_A486_30min_R1 2 RVIISAPSADAPMFVMGVNHEKYDNSLK 28 2 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 279.32 7.61E-81 155860000 183803 120719 92328 76348 228390 127314 243000 246830 105776 283870 FALSE FALSE TRUE 170919.3589 111152.7868 128079.8742 177742.0024 199743.1965 111607.2931 182198.8298 190632.1973 114944.7488 212787.1043 0.803241152 0.52236618 0.601915584 0.83530439 0.938699726 0.524502147 0.856249397 0.895882285 0.54018663 1 17.6990512 -14 0.161678652 1.962815461 0.659399654 0.197002356 0.157615298 220.9031184 2.038531468 69.00244215 0.66020133 1.00E-14 14 -1.303415808 RVLGLVLLR ddPTM_HeLa_A485_30min_R1 2 RVLGLVLLR 9 1 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 ; ; 176.79 2.99E-08 192935000 131879 188173 186124 104239 203211 174023 237200 288950 131114 170467 FALSE FALSE TRUE 161215.0286 210178.1955 254979.0129 109933.3126 182978.5993 183134.5752 186520.2823 218084.5594 157427.3772 127972.7141 1.259760955 1.642367257 1.99244827 0.859037127 1.429825104 1.431043926 1.457500402 1.704148896 1.230163619 1 16.96547671 -7.997981161 9.984893328 1.000004693 1.47122038 0.228369569 0.278967525 0.124131198 250.1181058 0.270151692 0.069791727 1.00E-08 7.997981161 0.471215687 RVLGLVLLR ddPTM_HeLa_A486_30min_R1 2 RVLGLVLLR 9 1 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 ; ; 172.21 7.56E-07 158415000 145092 158125 162789 62786 226380 152172 205908 215550 136531 200079 FALSE FALSE TRUE 134921.8001 145594.5991 225825.2604 146168.981 197985.3095 133398.5658 154387.6405 166473.9704 148365.617 149977.9161 0.899611113 0.970773584 1.505723418 0.97460336 1.320096416 0.889454723 1.029402492 1.109989889 0.989249757 1 17.19439056 -6.279919203 24.92431429 1.012105204 1.136862473 0.121411028 0.174764844 1943.539115 2621304.301 0.061776868 0.054576984 5.25E-07 6.279919203 0.12475727 RVLIAAHGNSLR ddPTM_HeLa_A485_30min_R1 1 RVLIAAHGNSLR 12 1 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 0 100.22 0.0014334 19560000 8029.8 12165 12340 4600.8 13385 13032 14407 20040 9492.5 8756 FALSE FALSE TRUE 9816.001308 13587.59093 16905.07951 4852.130054 12052.3424 13714.33537 11328.82676 15125.15858 11397.55768 6573.290342 1.493316254 2.067091247 2.57178348 0.738158487 1.833532641 2.086372981 1.723463618 2.301002662 1.733919709 1 12.68239999 -10.28549819 2.071957366 0.971927392 1.851981654 0.221401648 0.471273001 168655.7469 145396.8757 29413.14613 0.124485446 5.18E-11 10.28549819 0.880054262 RVLIAAHGNSLR ddPTM_HeLa_A486_30min_R1 2 RVLIAAHGNSLR 12 1 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 0 ; ; 71.558 0.017707 26936000 13619.4 12748.6 14063.5 2725.6 18372.4 11808.4 15105.7 15672.1 11647.1 13970.4 FALSE FALSE TRUE 12664.75039 11738.35451 19509.26383 6345.334544 16067.96228 10351.59967 11326.09409 12103.90495 12656.68001 10472.12091 1.209377785 1.120914723 1.862971599 0.605926402 1.53435607 0.988491229 1.0815473 1.155821734 1.208607131 1 13.35426604 -5.260827728 24.99992148 1.10351943 1.370070658 0.202505858 0.283245634 101.1485205 4134155.103 0.07468259 0.120021642 5.48E-06 5.260827728 0.266551227 RVLQALEGLK ddPTM_HeLa_A486_30min_R1 1 RVLQALEGLK 10 1 P39019;A0A075B6E2 P39019 RPS19 40S ribosomal protein S19 0 0 107.06 0.0021598 48470000 125830 124970 94729 53865 171770 122940 135230 143580 99121 142920 FALSE FALSE TRUE 117009.9668 115066.9221 131410.6057 125400.4422 150225.0049 107772.9128 101394.0237 110889.9683 107712.8881 107131.9017 1.092204702 1.074067763 1.22662441 1.170523814 1.402243426 1.005983381 0.946440995 1.035078875 1.005423094 1 16.70902862 -6.471767338 24.97229463 0.996309209 1.188821847 0.56140691 0.085966624 277.6003705 135631.5556 0.031527288 0.02780413 3.37E-07 6.471767338 0.192512638 RVLSGEFQIVNPHLLK ddPTM_HeLa_A485_30min_R1 1 RVLSGEFQIVNPHLLK 16 1 P23921;E9PL69 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit 0 0 58.671 0.019951 9971500 8224.4 12758 9041.6 6977.6 13559 13679 15409 22587 9111 10530 FALSE FALSE TRUE 10053.88941 14249.93712 12386.46409 7358.76862 12209.01835 14395.21129 12116.74127 17047.50283 10939.49413 7905.06479 1.271828843 1.802633817 1.566902286 0.930892891 1.544455191 1.821011171 1.532782032 2.156529173 1.383858883 1 12.94856157 -5.996144868 24.99232505 1.652073446 1.410103651 0.039918791 0.349544479 285.8527537 1853118.92 0.106455724 0.120183865 1.01E-06 5.996144868 -0.241969795 RVNDAEPGS(ph)PEAPQGK ddPTM_HeLa_A485_30min_R1 2 RVNDAEPGSPEAPQGK 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 RVNDAEPGS(1)PEAPQGK;RVNDAEPGS(1)PEAPQGK ; 188.44 3.82E-18 2808500000 1989350 2298560 2025470 2326790 2813110 2519900 3308530 3600040 2200420 3091620 TRUE FALSE FALSE 2431874.044 2567356.597 2774775.64 2453896.646 2533026.891 2651838.067 2601635.537 2717124.545 2642024.111 2320936.031 1.047798824 1.106172925 1.195541627 1.057287497 1.091381605 1.142572666 1.120942371 1.17070204 1.138344218 1 21.14627533 -6.252527382 23.71638561 1.125583019 1.102974972 0 0.056678766 1371.936456 3650976.385 0.018491277 0.018254597 5.59E-07 6.252527382 -0.022608046 RVNDAEPGS(ph)PEAPQGK ddPTM_HeLa_A486_30min_R1 2 RVNDAEPGSPEAPQGK 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 RVNDAEPGS(1)PEAPQGK;RVNDAEPGS(1)PEAPQGK ; 159.47 1.42E-09 1485800000 1031030 1030430 726520 345233 1103040 1007140 1191120 1199670 822820 1223240 TRUE FALSE FALSE 958760.1212 948774.974 1007848.001 803719.8711 964686.4378 882889.3066 893089.1776 926531.3296 894142.7001 916932.742 1.045616627 1.0347269 1.099151502 0.876530889 1.052079824 0.962872484 0.973996387 1.010468148 0.97514535 1 19.80645639 -5.220229991 24.99997625 0.981362223 1.057321192 0.40713023 0.044740562 508.8328091 308686.3912 0.011389509 0.019726937 6.02E-06 5.220229991 0.075958969 RVNNGNTAPEDS(ph)SPAK ddPTM_HeLa_A485_30min_R1 1 RVNNGNTAPEDSSPAK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 RVNNGNTAPEDS(0.559)S(0.441)PAK 60.034 0.0099462 0 84292 103550 86484 117980 121760 120400 152700 155460 96645 173200 TRUE FALSE FALSE 103042.4646 115659.2717 118478.0305 124424.9487 109637.1469 126703.9578 120074.3976 117333.1912 116040.765 130024.4275 0.792485432 0.889519561 0.911198248 0.956935178 0.843204227 0.974462724 0.923475687 0.902393446 0.892453574 1 16.98842316 RVNNGNTAPEDSS(ph)PAK ddPTM_HeLa_A485_30min_R1 3 RVNNGNTAPEDSSPAK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 RVNNGNTAPEDS(0.111)S(0.889)PAK;RVNNGNTAPEDS(0.057)S(0.943)PAK;RVNNGNTAPEDS(0.038)S(0.962)PAK ;; 142.43 5.43E-08 717740000 536160 589140 485620 728630 723100 661170 864490 931500 532150 947270 TRUE FALSE FALSE 655426.9423 658034.7982 665271.0463 768433.2119 651105.625 695787.8388 679784.6493 703048.1645 638947.6238 711133.0222 0.921665739 0.925332923 0.935508584 1.080575909 0.915589074 0.978421501 0.955917709 0.988631019 0.898492411 1 19.43975993 -5.022667413 24.97819176 0.973366407 0.925229645 0.175303849 0.046608253 1245.669524 1372657.862 0.012221753 0.021381319 9.49E-06 5.022667413 -0.048136763 RVNNGNTAPEDSS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 RVNNGNTAPEDSSPAK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 RVNNGNTAPEDS(0.038)S(0.962)PAK 148.38 3.59E-08 273340000 219510 216320 126460 107630 201770 225660 291450 240880 165740 342280 TRUE FALSE FALSE 204123.4826 199178.0154 175428.6987 250568.0793 176462.1252 197820.3635 218526.1274 186036.8824 180106.4766 256570.8601 0.795583265 0.776308016 0.683743659 0.976603809 0.687771499 0.771016488 0.851718419 0.725089678 0.701975573 1 17.9689978 -10.74195485 2.742146979 1.04392181 0.775931846 0.392843009 0.084112239 48066292.1 39575946.37 14364846.28 0.020129093 1.81E-11 10.74195485 -0.267989964 RVNNGNTAPEDSS(ph)PAKK ddPTM_HeLa_A485_30min_R1 3 RVNNGNTAPEDSSPAKK 17 2 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 RVNNGNT(0.001)APEDS(0.317)S(0.682)PAKK;RVNNGNTAPEDS(0.291)S(0.708)PAKK;RVNNGNTAPEDS(0.201)S(0.799)PAKK ;; 81.144 0.0014061 2131180000 1846800 1500830 890900 2786620 1927800 2075270 3375330 3471180 1420870 3643240 TRUE FALSE FALSE 2257614.289 1676339.013 1220480.983 2938845.995 1735861.463 2183927.928 2654163.172 2619867.662 1706025.576 2735047.317 0.825438841 0.612910425 0.446237612 1.074513767 0.634673284 0.798497311 0.970426784 0.957887509 0.623764556 1 21.38313436 -5.255589768 24.99307937 0.855865605 0.626667122 0.303329551 0.164455721 617.9977371 2640452.947 0.044423322 0.0743297 5.55E-06 5.255589768 -0.229198482 RVNNGNTAPEDSS(ph)PAKK ddPTM_HeLa_A486_30min_R1 2 RVNNGNTAPEDSSPAKK 17 2 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 RVNNGNTAPEDS(0.249)S(0.751)PAKK;RVNNGNTAPEDS(0.184)S(0.816)PAKK ; 117.38 3.67E-05 2042790000 2753120 2265930 928970 1650150 1941180 2770160 3870500 3313700 1823190 4907000 TRUE FALSE FALSE 2560140.505 2086369.454 1288692.063 3841632.594 1697699.104 2428405.824 2902059.962 2559242.848 1981225.577 3678255.261 0.696020348 0.567217147 0.350354168 1.044417073 0.461550105 0.6602059 0.788977316 0.695776303 0.538631888 1 21.81059017 -14 0.288915964 3.706744614 0.626238073 0.252810258 0.180712378 347.4782899 3.287530232 566.99198 0.191565647 1.00E-14 14 -3.080506541 RVNS(ph)GDTEVGSSLLR ddPTM_HeLa_A485_30min_R1 1 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RVNS(0.868)GDT(0.12)EVGS(0.009)S(0.003)LLR 99.055 0.0017525 102680000 130840 182150 178660 145730 215500 178860 206270 262230 172760 223560 TRUE FALSE FALSE 159944.9066 203450.858 244753.7687 153690.8609 194044.0633 188224.833 162198.7294 197917.6813 207431.3474 167830.6063 0.953013935 1.212239308 1.458338107 0.9157499 1.156189968 1.121516731 0.966443088 1.17927049 1.235956611 1 17.35664631 -5.287911564 24.98841352 1.089533391 1.208301537 0.13182061 0.146980374 1594.601736 1505220.156 0.041833827 0.062067669 5.15E-06 5.287911564 0.118768146 RVNS(ph)GDTEVGSSLLR ddPTM_HeLa_A486_30min_R1 1 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RVNS(0.966)GDT(0.034)EVGSSLLR 84.978 0.0011446 450720000 163820 177030 152030 93641 219200 188540 253260 251900 188570 273250 TRUE FALSE FALSE 152337.064 163001.4981 210900.0875 218000.9804 191705.892 165279.8517 189891.6693 194547.8689 204915.3994 204826.4214 0.74373737 0.795803085 1.029652747 1.064320603 0.935943179 0.806926424 0.927085812 0.949818229 1.000434407 1 17.6440423 -4.643676332 5.679612634 0.957675296 0.757308643 0.576541501 0.066967685 0.155067116 6.913165877 0.019213659 0.052701054 2.27E-05 4.643676332 -0.200366653 RVNS(ph)NGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 1 RVNSNGKESPGSSEFFQEAVSHGK 24 2 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 0 RVNS(0.986)NGKES(0.916)PGS(0.076)S(0.022)EFFQEAVSHGK 79.286 0.0037776 904810000 396460 323970 189260 492440 376990 376980 555070 462430 284060 572640 TRUE FALSE FALSE 484651.1592 361855.4733 259275.1498 519340.7503 339455.5519 396718.0899 436474.76 349018.3174 341068.2364 429891.3867 1.127380483 0.84173697 0.603117806 1.208074333 0.789630968 0.922833307 1.015314039 0.811875577 0.793382345 1 18.71361268 -10.20545131 5.145118164 1.000008327 0.898018249 0.029545249 0.16833502 1.56E-05 2.40E-06 0.157685655 0.038241267 6.23E-11 10.20545131 -0.101990077 RVNS(ph)NGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 2 RVNSNGKESPGSSEFFQEAVSHGK 24 2 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 0 RVNS(0.999)NGKES(0.963)PGS(0.031)S(0.007)EFFQEAVSHGK;RVNS(0.708)NGKES(0.947)PGS(0.186)S(0.158)EFFQEAVSHGK ; 110.47 0.00017354 1940100000 522300 512910 268070 223192 413030 541350 640580 578700 440650 797950 TRUE FALSE FALSE 485689.4672 472265.1436 371873.8832 519602.2555 361223.926 474563.741 480300.1086 446942.6429 478845.8968 598138.1262 0.812002188 0.78955867 0.621719076 0.86869944 0.603913896 0.793401591 0.802991964 0.74722313 0.800560733 1 19.19011915 -9.024332548 0.638433616 1.013764745 0.747140073 0.464754621 0.078621805 4.115543844 1.874830955 0.21752407 0.029661848 9.46E-10 9.024332548 -0.266624672 RVNS(ph)NGKESPGS(ph)SEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 1 RVNSNGKESPGSSEFFQEAVSHGK 24 2 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 0 RVNS(0.97)NGKES(0.042)PGS(0.849)S(0.139)EFFQEAVSHGK 144.55 2.32E-09 682490000 545300 477090 305590 655540 486880 509200 758700 622890 425530 814150 TRUE FALSE FALSE 666600.1037 532881.5254 418640.4577 691350.4903 438404.5177 535860.9246 596597.547 470125.2508 510929.9678 611197.3883 1.090646191 0.87186486 0.68495132 1.131141107 0.717287943 0.876739552 0.976112723 0.76918727 0.8359492 1 19.22127885 -4.262907692 7.655741906 0.866887487 1.092805372 0.202200323 0.128672787 0.142554068 89.44869186 0.030216102 0.170414325 5.46E-05 4.262907692 0.225917885 RVNSGDT(ph)EVGSSLLR ddPTM_HeLa_A485_30min_R1 1 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RVNS(0.062)GDT(0.367)EVGS(0.367)S(0.205)LLR 98.408 0.00014823 0 166610 232170 251330 188360 291000 270270 322540 333220 233810 301810 TRUE FALSE FALSE 203671.8197 259320.2619 344307.4257 198649.6298 262027.0182 284420.9193 253626.6941 251497.2725 280733.5224 226574.3214 0.89891837 1.144526265 1.519622451 0.87675262 1.156472704 1.255309593 1.119397346 1.10999901 1.239035036 1 17.78962484 -10.42078229 5.350727601 0.999879654 1.151240594 0.06082536 0.172058387 0.000241892 2.62E-05 0.16313973 0.039535824 3.80E-11 10.42078229 0.15136094 RVNSGDTEVGS(ph)SLLR ddPTM_HeLa_A485_30min_R1 1 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RVNS(0.156)GDT(0.156)EVGS(0.344)S(0.344)LLR 120.92 3.20E-05 0 206740 247130 261510 190970 324220 261860 329560 348020 291120 306100 TRUE FALSE FALSE 252728.5998 276029.7038 358253.4313 201402.2075 291939.5184 275570.5847 259146.8137 262667.5493 349545.1137 229794.9034 1.099800718 1.201200287 1.559013825 0.876443318 1.270435132 1.199202335 1.127730902 1.143052111 1.521117782 1 17.80998728 -5.256182906 24.992972 1.173098555 1.278124431 0.078337269 0.192046143 1424.995436 6775410.758 0.051558322 0.085860058 5.54E-06 5.256182906 0.105025877 RVNSGDTEVGSS(ph)LLR ddPTM_HeLa_A485_30min_R1 1 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RVNS(0.042)GDT(0.133)EVGS(0.268)S(0.557)LLR 123.76 2.67E-05 0 182900 217610 235760 177560 277580 236770 254360 308620 256680 306990 TRUE FALSE FALSE 223585.474 243057.5965 322977.4348 187259.6532 249943.1606 249166.9111 200013.9081 232930.4611 308193.3216 230463.0427 0.970157607 1.054648909 1.40142832 0.812536583 1.084525994 1.081157778 0.867878449 1.010706352 1.337278715 1 17.81417589 -5.280919642 24.99843543 1.026105037 1.133335437 0.088714617 0.16719181 2192.459181 2813512.446 0.047273351 0.070229637 5.24E-06 5.280919642 0.1072304 RVNSNGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 1 RVNSNGKESPGSSEFFQEAVSHGK 24 2 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 RVNS(0.196)NGKES(0.766)PGS(0.019)S(0.019)EFFQEAVSHGK 246.76 1.30E-49 386700000 217820 228810 167860 298520 284400 317790 400750 442430 237670 407400 TRUE FALSE FALSE 266273.3075 255567.3391 229958.3992 314827.3917 256084.1374 334428.993 315126.4887 333923.3488 285368.189 305842.6776 0.870621816 0.835616995 0.7518846 1.029376914 0.837306747 1.093467385 1.030354858 1.091814103 0.933055488 1 18.22243021 -5.738403932 1.229779808 1.030365443 0.827842129 0.483991404 0.081112494 0.366431197 1.166129365 0.031620769 0.046922451 1.83E-06 5.738403932 -0.202523314 RVNSNGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 2 RVNSNGKESPGSSEFFQEAVSHGK 24 2 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 RVNS(0.168)NGKES(0.832)PGSSEFFQEAVSHGK;RVNS(0.169)NGKES(0.807)PGS(0.024)SEFFQEAVSHGK ; 221.86 1.70E-38 980020000 552570 524460 256185 189629 451630 580540 690480 612470 412750 711550 TRUE FALSE FALSE 513837.6965 482899.8795 355386.6929 441465.8953 394982.3541 508918.8773 517714.6008 473023.9511 448527.5023 533373.2486 0.963373581 0.905369515 0.666300182 0.827686609 0.740536491 0.954151485 0.970642233 0.886853535 0.840926131 1 19.02478594 -6.278172712 24.85457622 0.925950999 0.817175299 0.28595893 0.086563923 1116.600468 1658518.69 0.032038067 0.028329494 5.27E-07 6.278172712 -0.108775701 RVPFSLLR ddPTM_HeLa_A485_30min_R1 2 RVPFSLLR 8 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 125.82 0.0012774 54928000 27737 26259 30405 25693 37719 67576 76455 114706 22204.8 37307 FALSE FALSE TRUE 33906.99996 29329.76163 41653.07476 27096.54353 33963.56392 71114.17487 60119.76467 86574.17365 26661.09969 28007.05148 1.210659393 1.047227754 1.487235269 0.967490046 1.212679026 2.539152503 2.146593857 3.0911563 0.951942396 1 14.77350249 -6.237371504 21.2967427 2.0890175 1.18210056 0.258856808 0.620340553 136.2795409 120587.6234 0.194197063 0.193982796 5.79E-07 6.237371504 -0.906916941 RVPGS(ph)SGHLHK ddPTM_HeLa_A486_30min_R1 5 RVPGSSGHLHK 11 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 RVPGS(0.5)S(0.5)GHLHK;RVPGS(0.5)S(0.5)GHLHK;RVPGS(0.5)S(0.5)GHLHK;RVPGS(0.5)S(0.5)GHLHK;RVPGS(0.5)S(0.5)GHLHK ;;;; 90.707 0.0022375 6990980000 2194610 2087940 1407562 222459 1986760 1547004 1877740 1793120 1574379 1454199 TRUE FALSE FALSE 2040779.172 1922484.03 1952607.702 517895.7945 1737562.035 1356150.375 1407909.591 1384865.72 1710847.439 1090058.105 1.872174669 1.763652801 1.791287724 0.47510843 1.594008638 1.244108336 1.291591324 1.270451284 1.569501141 1 20.05597361 -5.061181359 24.99999883 1.230802143 1.80781102 0.462303294 0.297071649 199.6204307 81568.73148 0.077409651 0.134077731 8.69E-06 5.061181359 0.577008877 RVPGS(ph)SGR ddPTM_HeLa_A485_30min_R1 3 RVPGSSGR 8 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 RVPGS(0.63)S(0.37)GR;RVPGS(0.634)S(0.366)GR;RVPGS(0.555)S(0.445)GR ;; 91.549 0.0021675 655670000 263184 306602 159040 215354 127652 273967 187396 329166 218018 248459 TRUE FALSE FALSE 321728.3728 342456.4368 217875.5142 227118.2437 114942.5187 288311.4885 147357.3137 248437.5224 261772.2128 186522.7438 1.724874759 1.836003641 1.16809087 1.217643699 0.616238622 1.545717603 0.790023301 1.331942246 1.403433208 1 17.50899203 -4.774188664 9.914780715 1.132574674 1.780847842 0.488435383 0.264570659 0.154402037 111.3507065 0.066490268 0.146202968 1.68E-05 4.774188664 0.648273168 RVPGSS(ph)GHLHK ddPTM_HeLa_A485_30min_R1 6 RVPGSSGHLHK 11 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 RVPGS(0.239)S(0.761)GHLHK;RVPGS(0.263)S(0.737)GHLHK;RVPGS(0.157)S(0.843)GHLHK;RVPGS(0.1)S(0.9)GHLHK;RVPGS(0.045)S(0.955)GHLHK;RVPGS(0.149)S(0.851)GHLHK ;;;;; 150.81 5.09E-07 15533260000 5347420 6150990 5070090 3744750 6415520 5558920 6538690 6378020 5181790 5939320 TRUE FALSE FALSE 6536935.131 6870294.774 6945727.275 3949316.21 5776768.303 5849976.455 5141645.465 4813800.595 6221727.723 4458756.829 1.466089177 1.540854332 1.557772164 0.885743798 1.295600663 1.312019623 1.153156735 1.079628421 1.395395165 1 22.08821009 -5.228963766 24.99505763 1.175209917 1.523500239 0.564204964 0.145112198 485.0328331 373308.0573 0.038263959 0.066269489 5.90E-06 5.228963766 0.348290322 RVPGSS(ph)GHLHK ddPTM_HeLa_A486_30min_R1 3 RVPGSSGHLHK 11 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 RVPGS(0.302)S(0.698)GHLHK;RVPGS(0.171)S(0.829)GHLHK;RVPGS(0.266)S(0.734)GHLHK ;; 122.66 6.68E-05 6672950000 2438660 2308430 1583020 222511 2129670 1857720 2180540 2097650 1758620 1732170 TRUE FALSE FALSE 2267722.527 2125501.6 2196007.739 518016.8531 1862546.93 1628533.394 1634945.829 1620060.886 1911058.598 1298423.357 1.746520127 1.636986571 1.691287919 0.39895836 1.434468134 1.254239139 1.259177771 1.247713912 1.471830113 1 20.30832943 RVPGSS(ph)GR ddPTM_HeLa_A485_30min_R1 4 RVPGSSGR 8 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 RVPGS(0.343)S(0.657)GR;RVPGS(0.111)S(0.889)GR;RVPGS(0.085)S(0.915)GR;RVPGS(0.079)S(0.921)GR ;;; 112.93 0.0006427 1878940000 460890 487199 269837 296664 197454 450852 323181 509527 349728 395286 TRUE FALSE FALSE 563413.3904 544172.685 369660.9352 312870.0031 177794.7865 474457.9136 254130.7392 384564.7043 419915.2017 296748.4749 1.898622699 1.833784269 1.245704583 1.054327249 0.59914305 1.598855441 0.856384314 1.295928158 1.415054287 1 18.17888109 -4.789718339 3.596133889 1.118730512 1.893290001 0.553078112 0.265988961 0.157870978 4.238984268 0.070188606 0.182763751 1.62E-05 4.789718339 0.774559488 RVPGSS(ph)GR ddPTM_HeLa_A486_30min_R1 5 RVPGSSGR 8 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 RVPGS(0.191)S(0.809)GR;RVPGS(0.094)S(0.906)GR;RVPGS(0.302)S(0.698)GR;RVPGS(0.025)S(0.975)GR;RVPGS(0.05)S(0.95)GR ;;;; 123.67 0.00037175 1040190000 580734 293832 633675 177538 274226 715065 340957 307750 626205 510263 TRUE FALSE FALSE 540027.5455 270547.6822 879050.9304 413317.4363 239830.018 626847.5505 255645.9523 237682.0431 680484.9536 382489.8235 1.411874283 0.707333021 2.298233512 1.08059721 0.627023265 1.638860728 0.668373213 0.621407495 1.779092963 1 18.54506184 -5.488873514 24.98778623 1.029114895 1.444873801 0.116738776 0.516373943 1349.33718 991521.8381 0.142188744 0.210757325 3.24E-06 5.488873514 0.415758907 RVPLS(ph)PLSLLAGPADAR ddPTM_HeLa_A485_30min_R1 2 RVPLSPLSLLAGPADAR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 RVPLS(1)PLSLLAGPADAR;RVPLS(1)PLSLLAGPADAR ; 149.67 3.04E-08 522600000 147848 225650 223025 140993 251810 218673 228278 276870 180368 166431 TRUE FALSE FALSE 180736.2775 252037.8046 305531.2283 148695.0906 226738.9122 230122.3801 179504.5404 208967.1984 216566.2032 124942.8146 1.446551993 2.017225283 2.445368541 1.190105177 1.814741511 1.841821643 1.436693586 1.672502729 1.733322591 1 16.93090841 -11.31532281 0.208210735 3.53E-16 1.897825721 0.32172713 0.325157819 47.40347311 1.288231025 23.19486633 0.799352107 4.84E-12 11.31532281 1.897825721 RVPLS(ph)PLSLLAGPADAR ddPTM_HeLa_A486_30min_R1 2 RVPLSPLSLLAGPADAR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 RVPLS(1)PLSLLAGPADAR;RVPLS(1)PLSLLAGPADAR ; 163.95 4.11E-12 264950000 132789 131117 134673 57490 168170 100548 136030 151292 97519 145267 TRUE FALSE FALSE 123481.1768 120726.8114 186821.9923 133839.6254 147076.5505 88143.41006 101993.8552 116846.1143 105972.0254 108891.1977 1.133986764 1.108692107 1.715675796 1.229113356 1.350674376 0.809463133 0.936658402 1.073053808 0.973191844 1 16.73252781 -6.249485523 24.8789734 0.96167586 1.314883822 0.518872008 0.168021289 607.6073379 1264583.661 0.057582486 0.057140035 5.63E-07 6.249485523 0.353207962 RVPPPALS(ph)R ddPTM_HeLa_A485_30min_R1 8 RVPPPALSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R ;;;;;;; 112.59 0.00047975 3842970000 636263 1066026 1084950 593495 1129275 929546 1109238 1406012 945204 825617 TRUE FALSE FALSE 777797.5093 1190688.468 1486318.154 625916.129 1016840.416 978215.5912 872240.2397 1061185.352 1134897.773 619805.8763 1.254905026 1.921066762 2.398038177 1.009858333 1.640578857 1.578261241 1.407279719 1.712125349 1.831053587 1 19.24145691 -5.26605247 24.99566455 1.494821542 1.864309649 0.198501203 0.365464538 681.0586868 3690265.112 0.101622043 0.156589682 5.42E-06 5.26605247 0.369488107 RVPPPALS(ph)R ddPTM_HeLa_A486_30min_R1 7 RVPPPALSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R;RVPPPALS(1)R ;;;;;; 93.623 0.0017453 2200070000 619414 697428 607268 199572 752326 569552 683733 694491 577840 728619 TRUE FALSE FALSE 575996.2773 642161.2653 842418.4328 464613.7018 657962.2579 499286.465 512655.7716 536370.5599 627927.6365 546168.0599 1.054613625 1.175757633 1.542416144 0.850679005 1.204688275 0.914162694 0.938641069 0.982061382 1.149696737 1 19.05898542 -5.283660548 24.99288153 1.006639214 1.24941208 0.369447832 0.150684825 840.2617399 945068.2693 0.042049871 0.06242599 5.20E-06 5.283660548 0.242772865 RVPS(ph)INQK ddPTM_HeLa_A485_30min_R1 1 RVPSINQK 8 1 A0A2R8YFT6;Q92834-4;Q92834-2;Q92834 A0A2R8YFT6 RPGR X-linked retinitis pigmentosa GTPase regulator 1 0 RVPS(1)INQK 47.053 0.036199 294040000 93068 110800 84367 106960 131230 108020 125860 138490 110230 129600 TRUE FALSE FALSE 113770.6555 123757.0962 115577.8641 112802.954 118164.2804 113675.7602 98968.98282 104525.1104 132352.1499 97293.10511 1.169359899 1.272002739 1.187934787 1.159413648 1.214518545 1.168384543 1.017225041 1.074332145 1.360344597 1 16.57004995 -6.531529169 24.98046883 1.115403356 1.200597165 0.155623676 0.096314442 393.0195735 1134937.938 0.036286046 0.028146162 2.94E-07 6.531529169 0.085193808 RVPS(ph)PTPAPK ddPTM_HeLa_A485_30min_R1 9 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RVPS(0.956)PT(0.044)PAPK;RVPS(0.976)PT(0.024)PAPK;RVPS(0.832)PT(0.168)PAPK;RVPS(0.924)PT(0.076)PAPK;RVPS(0.5)PT(0.5)PAPK;RVPS(0.945)PT(0.055)PAPK;RVPS(0.944)PT(0.056)PAPK;RVPS(0.996)PT(0.004)PAPK;RVPS(0.944)PT(0.056)PAPK ;;;;;;;; 138.42 7.13E-05 35187320000 17434930 19792120 16704800 19184030 22407120 22011730 26631990 29564400 17623820 25773920 TRUE FALSE FALSE 21313270.03 22106636.27 22884600.66 20232004.98 20176188.46 23164230.15 20941847.77 22313684.54 21160759.02 19348956.08 1.10152041 1.142523461 1.182730509 1.045638064 1.042753334 1.197182424 1.082324426 1.153224208 1.093638279 1 24.2057524 -8.026570305 21.84588518 0.999999998 1.118240796 0.337439616 0.049742599 578.5631353 475691.0266 0.048343828 0.012482323 9.41E-09 8.026570305 0.118240799 RVPS(ph)PTPAPK ddPTM_HeLa_A486_30min_R1 9 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RVPS(0.754)PT(0.246)PAPK;RVPS(0.845)PT(0.155)PAPK;RVPS(0.924)PT(0.076)PAPK;RVPS(0.985)PT(0.015)PAPK;RVPS(0.995)PT(0.005)PAPK;RVPS(0.994)PT(0.006)PAPK;RVPS(0.949)PT(0.051)PAPK;RVPS(0.988)PT(0.012)PAPK;RVPS(0.661)PT(0.339)PAPK ;;;;;;;; 148.78 1.14E-05 25608910000 19431400 18834190 12715750 7198260 19936630 19081860 22546000 21932100 15283390 23106400 TRUE FALSE FALSE 18069359.2 17341700.19 17639628.94 16757913.06 17435991.96 16727734.12 16904752.33 16938639.6 16608166.55 17320407.04 1.043241025 1.001229368 1.018430392 0.967524205 1.006673337 0.965781813 0.976002024 0.977958518 0.958878536 1 24.0459695 -3.222131453 0.522027773 0.975101729 1.202209981 0.5910091 0.016334112 7.448040547 0.681740113 0.008353227 1.307085485 0.00059961 3.222131453 0.227108252 RVPSPT(ph)PAPK ddPTM_HeLa_A486_30min_R1 1 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RVPS(0.323)PT(0.677)PAPK 117.2 0.00034939 1033100000 1734200 1727400 1086600 558570 1739000 1604600 1873100 1918800 1329300 2078000 TRUE FALSE FALSE 1612641.535 1590514.533 1507360.62 1300379.189 1520878.404 1406640.766 1404430.568 1481931.127 1444524.794 1557655.274 1.035300661 1.021095334 0.967711306 0.834831179 0.976389596 0.90305011 0.901631183 0.951385811 0.927371298 1 20.57094455 -4.888271208 3.807407815 0.924249289 1.028580687 0.457556892 0.043025714 0.176320844 4.77007219 0.010920171 0.025256756 1.29E-05 4.888271208 0.104331398 RVPSPTPAPK ddPTM_HeLa_A485_30min_R1 1 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 70.942 0.0037207 0 91364 126470 118190 123460 144000 148730 182870 165970 113820 157760 FALSE FALSE TRUE 111687.6066 141259.5664 161913.3993 130204.3072 129662.8544 156517.2728 143798.3306 125265.5973 136662.63 118433.3354 0.943041976 1.192734849 1.367126906 1.099389009 1.094817215 1.321564341 1.214171079 1.057688673 1.153920301 1 16.85371569 -8.102970907 1.104444773 1.00463896 1.17854797 0.145147691 0.117567117 1.198168822 3.168668845 0.114176326 0.036517382 7.89E-09 8.102970907 0.17390901 RVPTTLSIKPLGAIS(ph)PVLNR ddPTM_HeLa_A485_30min_R1 2 RVPTTLSIKPLGAISPVLNR 20 2 Q8NEN9 Q8NEN9 PDZD8 PDZ domain-containing protein 8 1 0 RVPTTLSIKPLGAIS(1)PVLNR;RVPTTLSIKPLGAIS(1)PVLNR ; 245.62 9.14E-47 1307550000 497090 489840 302060 491650 399790 429500 570830 713110 389280 930950 TRUE FALSE FALSE 607665.9556 547122.527 413804.5638 518507.5946 359985.5039 451987.9559 448867.5072 538218.6544 467404.9253 698881.2979 0.869483784 0.782854726 0.592095632 0.741910817 0.515088192 0.64673065 0.64226573 0.770114547 0.668790146 1 19.41468791 -9.99692882 7.419925505 1.000000011 0.687619499 0.472881482 0.097402574 1.87E-08 2.64E-09 0.097318906 0.023603301 1.01E-10 9.99692882 -0.312380512 RVPTTLSIKPLGAIS(ph)PVLNR ddPTM_HeLa_A486_30min_R1 2 RVPTTLSIKPLGAISPVLNR 20 2 Q8NEN9 Q8NEN9 PDZD8 PDZ domain-containing protein 8 1 0 RVPTTLSIKPLGAIS(1)PVLNR;RVPTTLSIKPLGAIS(1)PVLNR ; 190.79 1.17E-19 869680000 421440 355150 278530 111065 382200 333830 383640 381160 327380 440850 TRUE FALSE FALSE 391899.2323 327006.6206 386384.2753 258564.9329 334260.9121 292645.4487 287649.2143 294378.1887 355757.562 330458.2905 1.185926465 0.9895549 1.169237651 0.782443474 1.011507115 0.88557454 0.870455433 0.890817985 1.076558138 1 18.33410867 -5.245441694 24.98541253 0.925434375 1.102371198 0.449054767 0.092867254 747.1943332 1166976.977 0.023933495 0.041278233 5.68E-06 5.245441694 0.176936823 RVPTTLSIKPLGAIS(ph)PVLNRK ddPTM_HeLa_A485_30min_R1 2 RVPTTLSIKPLGAISPVLNRK 21 3 Q8NEN9 Q8NEN9 PDZD8 PDZ domain-containing protein 8 1 0 RVPTTLSIKPLGAIS(1)PVLNRK;RVPTTLSIKPLGAIS(1)PVLNRK ; 133.29 4.92E-06 398960000 108419 117840 63622 97027 101939 130060 145619 225713 81433 199437 TRUE FALSE FALSE 132536.4325 131620.3629 87158.42533 102327.3393 91789.59523 136869.7405 114506.3111 170356.5328 97775.85615 149721.0263 0.885222576 0.879104066 0.582138845 0.683453366 0.613070839 0.914165124 0.764797797 1.137826377 0.653053606 1 17.19191732 -7.048028112 24.96298473 0.927526525 0.754507934 0.203032006 0.154168432 630.90145 327913.4173 0.07190443 0.041515348 8.95E-08 7.048028112 -0.173018591 RVQDLSAGGQGSLTDS(ph)GPERRPEGPGAQAPSSPR ddPTM_HeLa_A485_30min_R1 1 RVQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 34 3 P40222 P40222 TXLNA Alpha-taxilin 1 0 RVQDLSAGGQGS(0.001)LT(0.192)DS(0.755)GPERRPEGPGAQAPS(0.026)S(0.026)PR 69.674 0.0063435 453300000 24856 81734 50266 35457 60968 80878 97604 146800 46289 43408 TRUE FALSE FALSE 30385.13145 91292.08031 68861.48514 37393.92613 54897.81185 85112.64702 76750.10805 110797.0698 55578.77771 32587.18447 0.932425797 2.801471861 2.113146204 1.147504049 1.684644217 2.611844147 2.355223666 3.400019721 1.705540955 1 14.99201709 -6.252656108 23.89174105 2.373320555 1.783316549 0.070673272 0.756750157 769.5641541 2093323.512 0.245738917 0.24188159 5.59E-07 6.252656108 -0.590004007 RVQDLSAGGQGSLTDSGPERRPEGPGAQAPS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 RVQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 34 3 P40222 P40222 TXLNA Alpha-taxilin 1 0 RVQDLSAGGQGSLT(0.001)DS(0.13)GPERRPEGPGAQAPS(0.434)S(0.434)PR 78.915 0.0032165 373650000 37026 86494 55636 26554 73853 83708 89280 187680 47504 39199 TRUE FALSE FALSE 45262.30596 96608.7209 76218.07161 28004.57778 66499.93601 88090.82144 70204.59865 141651.1857 57037.61707 29427.4107 1.538100189 3.2829501 2.590036629 0.951649401 2.259795694 2.993495497 2.385687254 4.813579664 1.938247902 1 14.84487299 -6.195259061 6.035417193 2.8487782 2.143656451 0.032081921 1.078668543 0.607615295 42.84449778 0.3530683 0.351814348 6.38E-07 6.195259061 -0.70512175 RVQNLLGHYLIHGFR ddPTM_HeLa_A485_30min_R1 1 RVQNLLGHYLIHGFR 15 1 E9PDU5;A0A087X295;Q9NNW5;V9GZ65;C9JFP6;V9GYU1;C9K020 E9PDU5 WDR6 WD repeat-containing protein 6 0 0 78.814 0.0066937 6451200 2763.8 5394.4 3886.1 1616.9 4062.1 4202.2 4092.5 4366.3 3125.1 2278.4 FALSE FALSE TRUE 3378.597775 6025.228155 5323.730104 1705.227153 3657.663061 4422.220694 3218.103942 3295.458079 3752.278905 1710.436811 1.975283596 3.5226254 3.112497387 0.996954194 2.138437993 2.585433537 1.881451523 1.926676307 2.193754766 1 10.74014909 -7.060999594 0.098912113 2.16E-13 4.047370666 0.295511495 0.639435719 16.22016703 1.34537894 23.54029437 27.74447497 8.69E-08 7.060999594 4.047370666 RVQS(ph)SPNLLAAGR ddPTM_HeLa_A485_30min_R1 2 RVQSSPNLLAAGR 13 1 O94875-11;O94875-9;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9JG84;C9IZT7;C9JDX2;C9JI79;C9JBB0;C9J9D3;C9JEA9;O94875-12 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RVQS(0.5)S(0.5)PNLLAAGR;RVQS(0.76)S(0.24)PNLLAAGR ; 183.17 2.25E-17 1142880000 92570 126313 123226 102603 150929 135040 151992 174175 109658 131472 TRUE FALSE FALSE 113161.8771 141084.2066 168812.4253 108207.9421 135901.9788 142110.4856 119517.6675 131458.3082 131665.3548 98698.44996 1.146541584 1.429447034 1.710385779 1.096348951 1.376941369 1.439845161 1.210937635 1.331918669 1.334016439 1 16.59073981 -12.64510482 0.254504865 2.41E-07 1.382612745 0.281910232 0.164141854 113.9249353 2.110111626 59.46761677 0.234763351 2.26E-13 12.64510482 1.382612504 RVQS(ph)SPNLLAAGR ddPTM_HeLa_A486_30min_R1 2 RVQSSPNLLAAGR 13 1 O94875-11;O94875-9;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9JG84;C9IZT7;C9JDX2;C9JI79;C9JBB0;C9J9D3;C9JEA9;O94875-12 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RVQS(0.905)S(0.095)PNLLAAGR;RVQS(0.974)S(0.026)PNLLAAGR ; 213.71 1.29E-22 652420000 218596 204336 182621 83300 236328 229840 246619 281515 192899 260551 TRUE FALSE FALSE 203273.5492 188143.6712 253336.742 193926.6097 206685.5386 201484.6776 184912.3177 217420.1799 209619.6406 195307.3337 1.040788102 0.963321078 1.29711843 0.992930506 1.05825795 1.031628838 0.94677611 1.113220768 1.07328095 1 17.5753866 RVQSS(ph)PNLLAAGR ddPTM_HeLa_A485_30min_R1 2 RVQSSPNLLAAGR 13 1 O94875-11;O94875-9;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9JG84;C9IZT7;C9JDX2;C9JI79;C9JBB0;C9J9D3;C9JEA9;O94875-12 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 RVQS(0.094)S(0.906)PNLLAAGR;RVQS(0.224)S(0.776)PNLLAAGR ; 242.86 2.84E-35 762590000 103794 154757 149471 120328 170325 143034 169016 194085 117490 145304 TRUE FALSE FALSE 126882.6172 172854.4849 204766.5429 126901.214 153366.845 150523.0391 132904.3509 146485.3494 141069.1653 109082.3869 1.163181525 1.584623236 1.877173288 1.163352009 1.40597258 1.379902323 1.218385063 1.342887276 1.293235043 1 16.73505865 -8.196473478 0.271346377 0.921253218 1.528510959 0.296756539 0.196545283 3.680567273 0.756047543 0.76062349 0.378451284 6.36E-09 8.196473478 0.607257741 RVQT(ph)PLLR ddPTM_HeLa_A485_30min_R1 8 RVQTPLLR 8 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR ;;;;;;; 138.76 0.00038341 9914940000 753584 1072707 1033118 665315 1214419 1093933 1056091 1202199 883072 965650 TRUE FALSE FALSE 921216.161 1198150.752 1415311.34 701659.4738 1093507.18 1151209.64 830448.5304 907357.8103 1060296.45 724931.2265 1.270763525 1.65277851 1.952338771 0.967897986 1.508428856 1.588026006 1.145554916 1.251646745 1.462616606 1 19.46748461 -9.268784834 0.145761349 0.625642027 1.7035518 0.219897462 0.259943145 29.41151215 1.263966491 7.02053543 2.252688667 5.39E-10 9.268784834 1.077909772 RVQT(ph)PLLR ddPTM_HeLa_A486_30min_R1 7 RVQTPLLR 8 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR;RVQT(1)PLLR ;;;;;; 121.36 0.00061694 7743080000 776424 837414 724667 227320 964811 650225 738792 819392 654967 715356 TRUE FALSE FALSE 722000.6871 771054.2648 1005277.47 529212.4481 843795.4079 570006.8505 553938.4275 632834.3288 711740.0669 536226.2014 1.346447983 1.437927246 1.8747265 0.986920159 1.573581085 1.062997013 1.033031258 1.180163012 1.32731311 1 19.03248219 -5.826252315 1.241533023 1.137390965 1.502750164 0.298657767 0.229925284 0.573532237 1.863784832 0.093944569 0.126923272 1.49E-06 5.826252315 0.365359198 RVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_A485_30min_R1 4 RVSEVEEEKEPVPQPLPSDDTR 22 2 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR ;;; 190.23 3.77E-20 4868500000 3438920 3006710 2313240 4411070 3086500 2718860 3801550 3030670 2152290 4796200 TRUE FALSE FALSE 4203895.89 3358318.58 3169003.738 4652035.585 2779197.223 2861215.305 2989317.787 2287393.431 2584234.861 3600595.608 1.16755569 0.932711958 0.880133201 1.292018347 0.771871525 0.794650557 0.830228693 0.635281959 0.717724272 1 21.77980415 -5.813197894 24.98063497 0.775471047 1.045007521 0.48274631 0.138782714 87.06563305 42020.63602 0.042405039 0.048082846 1.54E-06 5.813197894 0.269536474 RVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_A486_30min_R1 4 RVSEVEEEKEPVPQPLPSDDTR 22 2 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(1)EVEEEKEPVPQPLPSDDTR;RVS(0.999)EVEEEKEPVPQPLPS(0.001)DDTR;RVS(1)EVEEEKEPVPQPLPSDDTR ;;; 218.63 3.55E-36 4174060000 1944970 1859960 1119320 810020 1644120 1878830 2248350 1935420 1488730 2601350 TRUE FALSE FALSE 1808637.647 1712569.996 1552750.68 1885767.496 1437899.139 1647039.057 1685789.049 1494767.116 1617774.315 1949955.028 0.927527877 0.878261278 0.796300765 0.967082558 0.73740118 0.844654894 0.864527143 0.766564918 0.829646988 1 20.89500942 -4.457750002 4.071117581 0.842417794 0.922765611 0.074922306 0.077508541 0.511049238 15.87293483 0.018467185 0.082315337 3.49E-05 4.457750002 0.080347817 RVS(ph)FADPIYQAGLADDIDRR ddPTM_HeLa_A485_30min_R1 2 RVSFADPIYQAGLADDIDRR 20 2 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 RVS(1)FADPIYQAGLADDIDRR;RVS(1)FADPIYQAGLADDIDRR ; 133.95 1.40E-07 239740000 41580 64255 65929 42466 74594 59732 63027 77172 46144 52593 TRUE FALSE FALSE 50829.32755 71769.06331 90318.88063 44785.81005 67167.15944 62859.47516 49560.76657 58245.446 55404.67754 39482.533 1.287387705 1.817742122 2.287565507 1.134319575 1.701186685 1.592083141 1.255258029 1.475220599 1.403270594 1 15.26892693 -7.824562684 0.318231188 0.946522238 1.759602006 0.288090819 0.300539708 2.130712756 0.696334759 0.642160735 0.428852748 1.50E-08 7.824562684 0.813079769 RVS(ph)FADPIYQAGLADDIDRR ddPTM_HeLa_A486_30min_R1 2 RVSFADPIYQAGLADDIDRR 20 2 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 RVS(1)FADPIYQAGLADDIDRR;RVS(1)FADPIYQAGLADDIDRR ; 162.15 1.24E-13 247180000 113566 134419 130698 36052 146973 112001 129703 138033 100789 114332 TRUE FALSE FALSE 105605.6099 123767.1489 181307.7658 83930.87797 128538.2759 98183.45536 97249.93754 106605.8991 109525.4717 85702.52302 1.23223455 1.444148253 2.115547587 0.979327971 1.499819041 1.145630862 1.134738326 1.243906193 1.277972547 1 16.38705006 -5.30138582 24.99993364 1.202844991 1.581995206 0.365149982 0.249109339 580.4186729 363245.882 0.069428997 0.102981404 5.00E-06 5.30138582 0.379150215 RVS(ph)FADTIK ddPTM_HeLa_A485_30min_R1 2 RVSFADTIK 9 1 Q8NG31-4;Q8NG31-2;Q8NG31;E9PPJ1;Q8NG31-3 Q8NG31-4 CASC5 Protein CASC5 1 0 RVS(1)FADTIK;RVS(1)FADTIK ; 112.82 0.00052738 117100000 339654 372620 318998 382630 422330 397260 486450 555040 310380 495490 TRUE FALSE FALSE 415208.8605 416194.6676 437008.6348 403532.108 380281.3423 418059.9193 382515.9836 418915.5697 372670.419 371973.4618 1.116232482 1.11888269 1.174838207 1.084841123 1.022334605 1.123897165 1.028342134 1.126197465 1.001873675 1 18.50484017 -5.486259043 0.135757417 0.956832123 1.246650342 0.430773579 0.044251149 18.77142139 0.70980178 0.38423971 1.17172327 3.26E-06 5.486259043 0.289818219 RVS(ph)FADTIK ddPTM_HeLa_A486_30min_R1 2 RVSFADTIK 9 1 Q8NG31-4;Q8NG31-2;Q8NG31;E9PPJ1;Q8NG31-3 Q8NG31-4 CASC5 Protein CASC5 1 0 RVS(1)FADTIK;RVS(1)FADTIK ; 146.67 5.40E-05 299800000 598100 618300 416960 229136 688640 629230 734010 767370 480300 789620 TRUE FALSE FALSE 556176.2786 569303.6562 578418.0786 533440.1879 602264.3499 551602.0001 550352.9344 592656.6026 521932.7907 591894.0124 0.939655186 0.961833781 0.977232522 0.901242751 1.017520599 0.931926981 0.929816695 1.00128839 0.881801099 1 19.17497934 -4.24282366 21.15190811 0.95521926 0.939655079 0.012731141 0.042460549 3055.854537 3471693.933 0.009703608 0.241218243 5.72E-05 4.24282366 -0.015564181 RVS(ph)GDAAQDLDR ddPTM_HeLa_A485_30min_R1 2 RVSGDAAQDLDR 12 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RVS(1)GDAAQDLDR;RVS(1)GDAAQDLDR ; 165.66 1.34E-10 2156400000 578130 857420 827840 514890 980940 822180 846830 990210 785640 761820 TRUE FALSE FALSE 706733.024 957687.8104 1134092.465 543017.1369 883274.1693 865228.0735 665897.8525 747359.4449 943310.7417 571912.2943 1.235736722 1.674536148 1.982983189 0.949476244 1.54442242 1.512868463 1.164335614 1.306772826 1.649397558 1 19.12543439 -12.73572835 0.157885621 2.30E-12 1.581041377 0.172630627 0.282587623 150.8807185 1.990854735 50.955735 1.335477789 1.84E-13 12.73572835 1.581041377 RVS(ph)GDAAQDLDR ddPTM_HeLa_A486_30min_R1 2 RVSGDAAQDLDR 12 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RVS(1)GDAAQDLDR;RVS(1)GDAAQDLDR ; 148.22 9.11E-08 2094900000 1045370 1147430 1166850 356340 1452350 983710 1008100 1101250 975820 1017270 TRUE FALSE FALSE 972094.9613 1056503.468 1618685.569 829577.5284 1270182.72 862349.8618 755862.7174 850519.4151 1060404.863 762538.9707 1.274813483 1.385507507 2.122757828 1.087914927 1.66572827 1.13089284 0.991244705 1.115378293 1.390623829 1 19.54045154 -6.277909087 23.30753243 1.124440024 1.511463667 0.325995906 0.27439822 414.7359023 586921.3286 0.095512692 0.084537608 5.27E-07 6.277909087 0.387023643 RVS(ph)GPDPK ddPTM_HeLa_A485_30min_R1 1 RVSGPDPK 8 1 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RVS(1)GPDPK 56.551 0.02431 289670000 666470 447560 487040 1312200 669460 512280 759180 479570 636880 1698100 TRUE FALSE FALSE 814723.9522 499898.2487 667216.3634 1383882.163 602806.2118 539102.1887 596974.9911 361954.7056 764695.9742 1274794.921 0.639101975 0.392140132 0.523391137 1.085572385 0.472865244 0.422893267 0.468291002 0.283931713 0.599858033 1 20.28183375 -8.03379486 23.34353603 1.000000007 0.534796993 0.313947218 0.204555263 2776.112035 1917575.978 0.208142495 0.053742161 9.25E-09 8.03379486 -0.465203014 RVS(ph)GPDPK ddPTM_HeLa_A486_30min_R1 3 RVSGPDPK 8 1 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RVS(1)GPDPK;RVS(1)GPDPK;RVS(1)GPDPK ;; 78.136 0.0062182 1557870000 3208260 3307510 1923600 1415030 2596540 4032600 3887910 3502940 3041730 4306400 TRUE FALSE FALSE 2983377.541 3045410.862 2668469.436 3294261.352 2270857.741 3535098.812 2915113.796 2705397.031 3305389.605 3228049.41 0.924204423 0.94342139 0.826650741 1.02051144 0.70347676 1.095119177 0.903057365 0.838090341 1.023958802 1 21.62223123 -6.296184681 24.99994834 0.957613986 0.891409644 0.150936422 0.101157664 1574.649821 1132987.645 0.034414308 0.030351874 5.06E-07 6.296184681 -0.066204343 RVS(ph)GPDPKPGS(ph)NCSPAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A485_30min_R1 4 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 0 RVS(0.868)GPDPKPGS(0.389)NCS(0.315)PAQS(0.239)VLS(0.188)EVPSVPTNGMAK;RVS(0.998)GPDPKPGS(0.395)NCS(0.318)PAQS(0.239)VLS(0.049)EVPSVPTNGMAK;RVS(0.965)GPDPKPGS(0.542)NCS(0.407)PAQS(0.08)VLS(0.007)EVPSVPTNGMAK;RVS(0.982)GPDPKPGS(0.526)NCS(0.403)PAQS(0.058)VLS(0.031)EVPSVPTNGMAK ;;; 90.699 8.64E-05 1860873000 693165 462785 413053 1072520 812810 609422 985880 844880 613100 1372290 TRUE FALSE FALSE 847357.1629 516903.6801 565858.4933 1131109.052 731883.7825 641330.3936 775238.6841 637671.8553 736143.5463 1030203.358 0.822514464 0.50174917 0.549268733 1.097947355 0.710426516 0.622527959 0.752510345 0.618976681 0.714561393 1 19.97449772 -11.24373383 1.995620957 1.899335784 0.706613342 0.231913051 0.158188754 18625135.51 2961759.775 75470771.16 0.040532911 5.71E-12 11.24373383 -1.192722442 RVS(ph)GPDPKPGS(ph)NCSPAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A486_30min_R1 2 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 0 RVS(1)GPDPKPGS(0.603)NCS(0.391)PAQS(0.005)VLSEVPSVPTNGMAK;RVS(0.996)GPDPKPGS(0.433)NCS(0.317)PAQS(0.21)VLS(0.043)EVPSVPTNGMAK ; 191.52 1.79E-21 1714720000 1273770 1505950 801610 736400 1347180 1700830 1990430 1972690 1219760 1993160 TRUE FALSE FALSE 1184485.301 1386613.037 1112014.86 1714376.416 1178204.122 1490998.887 1492403.361 1523551.551 1325489.779 1494059.763 0.792796467 0.928084051 0.744290749 1.14746174 0.788592365 0.997951303 0.998891342 1.019739363 0.887173199 1 20.51080643 -5.235821135 24.99656732 0.971858466 0.8323598 0.346631655 0.097249827 923.6121762 901197.6879 0.024886305 0.043083864 5.81E-06 5.235821135 -0.139498666 RVS(ph)GPDPKPGSNCS(ph)PAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A485_30min_R1 2 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 0 RVS(0.999)GPDPKPGS(0.118)NCS(0.492)PAQS(0.382)VLS(0.008)EVPSVPTNGMAK;RVS(0.999)GPDPKPGS(0.308)NCS(0.436)PAQS(0.141)VLS(0.116)EVPSVPTNGMAK ; 156.29 3.28E-10 864810000 447380 321900 252274 677900 498760 393350 604730 519720 392750 823310 TRUE FALSE FALSE 546898.1376 359543.4048 345600.6506 714931.9605 449101.7031 413945.1978 475524.4953 392257.8551 471571.3225 618073.9689 0.884842535 0.581715819 0.559157428 1.156709385 0.726614816 0.669734075 0.769365026 0.634645487 0.762969072 1 19.23741998 -11.03201299 2.220662431 1.300295026 0.745153028 0.172862801 0.16411737 14225537.49 4805870.956 21732771.68 0.041510276 9.29E-12 11.03201299 -0.555141997 RVS(ph)GPDPKPGSNCS(ph)PAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A486_30min_R1 2 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 0 RVS(0.985)GPDPKPGS(0.169)NCS(0.646)PAQS(0.159)VLS(0.041)EVPSVPTNGMAK;RVS(0.999)GPDPKPGS(0.204)NCS(0.596)PAQS(0.161)VLS(0.041)EVPSVPTNGMAK ; 111.61 4.93E-05 1078910000 640010 734480 369510 350000 664340 838600 964220 925010 542080 942990 TRUE FALSE FALSE 595148.604 676277.1299 512594.1678 814817.688 581012.2825 735142.0583 722961.9575 714405.4158 589067.9309 706859.1662 0.841962066 0.956735319 0.725171565 1.152729889 0.821963285 1.040012061 1.022780763 1.010675747 0.833359683 1 19.43106328 -5.248896363 24.95811629 0.980833179 0.852834239 0.274787753 0.105008411 1082.701016 2154356.153 0.02706601 0.046470928 5.64E-06 5.248896363 -0.127998941 RVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A485_30min_R1 3 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RVS(0.78)GPDPKPGS(0.142)NCS(0.026)PAQS(0.026)VLS(0.026)EVPSVPTNGMAK;RVS(0.743)GPDPKPGS(0.078)NCS(0.078)PAQS(0.078)VLS(0.022)EVPSVPTNGMAK;RVS(0.845)GPDPKPGS(0.052)NCS(0.052)PAQS(0.052)VLS(0.001)EVPSVPTNGMAK ;; 95.111 7.50E-05 2315270000 696200 518760 411484 1060570 783170 686300 1017030 944460 603710 1394580 TRUE FALSE FALSE 851067.2881 579424.4694 563709.0549 1118506.254 705194.8449 722233.6068 799733.2321 712829.7041 724869.0594 1046936.871 0.812911754 0.553447381 0.538436529 1.068360743 0.673579147 0.689854018 0.763879135 0.680871716 0.692371316 1 19.99774302 -10.08306308 3.880454222 1.000066448 0.717340115 0.263600061 0.140714788 61887667.84 110797208.4 61443.59785 0.036044246 8.26E-11 10.08306308 -0.282726333 RVS(ph)GPDPKPGSNCSPAQSVLSEVPSVPTNGMAK ddPTM_HeLa_A486_30min_R1 5 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RVS(0.896)GPDPKPGS(0.032)NCS(0.032)PAQS(0.032)VLS(0.008)EVPSVPTNGMAK;RVS(0.945)GPDPKPGS(0.017)NCS(0.017)PAQS(0.017)VLS(0.003)EVPSVPTNGMAK;RVS(0.8)GPDPKPGS(0.063)NCS(0.063)PAQS(0.063)VLS(0.012)EVPSVPTNGMAK;RVS(0.998)GPDPKPGS(0.001)NCS(0.001)PAQS(0.001)VLSEVPSVPTNGMAK;RVS(0.976)GPDPKPGS(0.016)NCS(0.004)PAQS(0.004)VLSEVPSVPTNGMAK ;;;; 191.63 3.12E-21 22526900000 6100610 6303040 3371490 2699350 6070590 7174590 8432150 8042040 5327400 9137780 TRUE FALSE FALSE 5672988.743 5803564.155 4677021.22 6284223.218 5309159.996 6289462.032 6322336.884 6211043.048 5789183.321 6849620.411 0.828219434 0.847282595 0.682814658 0.91745569 0.775102805 0.918220522 0.923020037 0.906771861 0.845183087 1 22.70759261 -6.272607449 24.31927011 0.913086161 0.811121027 0.404883378 0.065571847 553.1816217 1204588.731 0.022166934 0.019738411 5.34E-07 6.272607449 -0.101965133 RVS(ph)HS(ph)PPPK ddPTM_HeLa_A485_30min_R1 11 RVSHSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK ;;;;;;;;;; 93.766 0.0013094 73113060000 5190348 5095372 4552326 6766980 5903820 5219425 6661400 5861080 5499684 8648270 TRUE FALSE FALSE 6344923.006 5691231.432 6236420.825 7136642.983 5316014.951 5492706.022 5238137.471 4423640.94 6603420.133 6492415.449 0.977282347 0.876596927 0.960570203 1.099227713 0.818803879 0.846018876 0.806808731 0.681355187 1.017097594 1 22.63032389 -5.802704656 24.99934034 0.842221688 0.969871738 0.217029129 0.104280951 202.0967746 122433.2458 0.031728982 0.035977641 1.58E-06 5.802704656 0.12765005 RVS(ph)HS(ph)PPPK ddPTM_HeLa_A486_30min_R1 11 RVSHSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK;RVS(1)HS(1)PPPK ;;;;;;;;;; 97.69 0.0010246 63922354000 5325260 4988140 3742950 2258886 4966560 6053520 6097650 5714430 4880890 6627710 TRUE FALSE FALSE 4951986.774 4592861.62 5192320.48 5258800.766 4343607.733 5306698.25 4571953.476 4413379.034 5303969.475 4968088.277 0.996759014 0.924472627 1.045134505 1.058515967 0.874301641 1.068156996 0.920264138 0.888345534 1.067607736 1 22.24425938 RVS(ph)HS(ph)PPPKQR ddPTM_HeLa_A485_30min_R1 10 RVSHSPPPKQR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR ;;;;;;;;; 86.467 0.0021244 30235020000 725075 1168008 828291 720879 1122786 1494151 1506420 2251688 910455 894554 TRUE FALSE FALSE 886365.4323 1304596.375 1134710.309 760258.7944 1010997.483 1572382.436 1184561.061 1699457.987 1093174.967 671558.1508 1.319864008 1.942640967 1.689667987 1.132081851 1.505450395 2.341394314 1.763899462 2.530619255 1.627818776 1 19.3571528 -6.208767049 24.80376707 1.942857577 1.529638986 0.11050695 0.438562828 534.3686348 251637.6017 0.138447811 0.138447664 6.18E-07 6.208767049 -0.413218592 RVS(ph)HS(ph)PPPKQR ddPTM_HeLa_A486_30min_R1 7 RVSHSPPPKQR 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR;RVS(1)HS(1)PPPKQR ;;;;;; 88.73 0.0019197 15882979000 907942 810697 775376 306253 1354566 938603 1025566 1243729 754368 812801 TRUE FALSE FALSE 844299.9544 746454.4172 1075622.352 712972.4612 1184663.701 822807.7049 768958.5395 960559.0571 819757.2256 609270.3392 1.385755879 1.225161261 1.765427075 1.170207075 1.944397463 1.350480488 1.262097447 1.576572821 1.345473713 1 19.21672298 -8.026183849 18.48251756 0.999999987 1.458753961 0.262959275 0.231803753 96.48773475 68110.15249 0.21252983 0.054874951 9.41E-09 8.026183849 0.458753974 RVS(ph)ISEGDDKIEYR ddPTM_HeLa_A485_30min_R1 3 RVSISEGDDKIEYR 14 2 P22087;M0R2U2;M0R1H0;M0R2B0;M0R0P1;M0R299;M0QXL5;M0R2Q4 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 1 0 RVS(0.765)IS(0.235)EGDDKIEYR;RVS(1)ISEGDDKIEYR;RVS(1)ISEGDDKIEYR ;; 145.91 3.70E-08 488300000 389840 394150 348326 482070 487640 451390 599570 573020 389186 653840 TRUE FALSE FALSE 476558.5631 440242.4139 477186.2825 508404.2634 439088.8494 475024.0824 471466.9715 432485.9465 467292.0604 490849.721 0.970884861 0.896898572 0.972163703 1.035763578 0.894548434 0.967758689 0.960511846 0.88109645 0.952006368 1 18.90492187 RVS(ph)ISEGDDKIEYR ddPTM_HeLa_A486_30min_R1 2 RVSISEGDDKIEYR 14 2 P22087;M0R2U2;M0R1H0;M0R2B0;M0R0P1;M0R299;M0QXL5;M0R2Q4 P22087 FBL rRNA 2-O-methyltransferase fibrillarin 1 0 RVS(0.996)IS(0.004)EGDDKIEYR;RVS(0.999)IS(0.001)EGDDKIEYR ; 165.3 2.76E-12 378880000 439780 401020 268540 203458 419940 445420 538490 527540 338590 574450 TRUE FALSE FALSE 408953.693 369241.7147 372525.8798 473660.5062 367267.2094 390468.6091 403754.1064 407430.6581 367939.2538 430603.981 0.949721115 0.857497216 0.865124096 1.099991006 0.852911784 0.906792845 0.937646014 0.946184142 0.854472485 1 18.71600213 -10.79705598 2.431232038 1.025697981 0.919916741 0.105347358 0.070825582 29616912.06 19104300.75 4491867.812 0.017688151 1.60E-11 10.79705598 -0.10578124 RVS(ph)LEPHQGPGT(ph)PESK ddPTM_HeLa_A486_30min_R1 1 RVSLEPHQGPGTPESK 16 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 2 0 RVS(1)LEPHQGPGT(1)PESK 86.211 0.00071225 97818000 120120 136470 89986 52893 149810 167390 164390 173890 131330 178940 TRUE FALSE FALSE 111700.2083 125655.6202 124830.9891 123137.5771 131019.4329 146739.1237 123257.8833 134299.043 142713.7901 134132.2593 0.8327617 0.936803874 0.930655979 0.918031037 0.976792858 1.09398831 0.918927959 1.001243427 1.063978128 1 17.03329673 -1.990164772 0.34611484 1.021232008 4.34E-11 0.551529289 0.048683808 24.5410246 0.65604593 0.043330683 14.42794862 0.010229048 1.990164772 -1.021232008 RVS(ph)LSEIGFGK ddPTM_HeLa_A485_30min_R1 2 RVSLSEIGFGK 11 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 RVS(0.994)LS(0.006)EIGFGK;RVS(0.991)LS(0.009)EIGFGK ; 169.37 2.28E-08 5924400000 5641800 6532300 5524100 6355300 7420100 6641800 8408600 8835400 5801100 7763900 TRUE FALSE FALSE 6896798.946 7296195.662 7567694.467 6702473.947 6681328.79 6989554.378 6612033.918 6668504.297 6965327.559 5828502.614 1.183288299 1.251813055 1.298394282 1.149947832 1.146319944 1.199202409 1.134430978 1.144119637 1.195045798 1 22.47469386 -14 0.111732805 0.38772308 1.295176025 0.640654654 0.045111566 107.4782461 0.793729838 14.99800643 0.568098041 1.00E-14 14 0.907452945 RVS(ph)LSEIGFGK ddPTM_HeLa_A486_30min_R1 3 RVSLSEIGFGK 11 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 RVS(0.999)LS(0.001)EIGFGK;RVS(0.998)LS(0.002)EIGFGK;RVS(0.94)LS(0.06)EIGFGK ;; 174.39 1.02E-08 6142530000 6087250 6369820 4620930 2191341 6322280 5961020 6938580 6746670 4840540 6269510 TRUE FALSE FALSE 5660565.21 5865052.265 6410277.849 5101552.592 5529280.689 5225609.96 5202473.895 5210600.52 5260121.905 4699583.888 1.204482215 1.247993951 1.364009666 1.085532829 1.176546865 1.11193035 1.107007348 1.10873657 1.119273968 1 22.16410159 -5.798274479 0.258554896 1.003533083 1.353779839 0.570493855 0.062727694 3.189843515 0.363551538 0.107278557 0.357092664 1.59E-06 5.798274479 0.350246757 RVS(ph)LTQR ddPTM_HeLa_A485_30min_R1 2 RVSLTQR 7 1 Q96I34 Q96I34 PPP1R16A Protein phosphatase 1 regulatory subunit 16A 1 0 RVS(1)LTQR;RVS(1)LTQR ; 103.26 0.0022385 232770000 45237 51407 45295 45079 36698 49873 47408 61017 54426 89260 TRUE FALSE FALSE 55299.81458 57418.60147 62051.50538 47541.55162 33044.21827 52484.27316 37278.89351 46052.48508 65348.79898 67009.12471 0.825257975 0.856877354 0.926015758 0.709478774 0.493130128 0.783240691 0.55632563 0.687256926 0.975222393 1 16.03206994 -10.24770208 11.81960381 1 0.74855124 0.200678679 0.14462696 1.40E-09 0 0.147819422 0.035851475 5.65E-11 10.24770208 -0.251448761 RVS(ph)LTQR ddPTM_HeLa_A486_30min_R1 2 RVSLTQR 7 1 Q96I34 Q96I34 PPP1R16A Protein phosphatase 1 regulatory subunit 16A 1 0 RVS(1)LTQR;RVS(0.999)LT(0.001)QR ; 108.93 0.0018328 171893000 52541 58480 62822 12851.5 59947 52478 50336 59037 65598 73156 TRUE FALSE FALSE 48858.14722 53845.83182 87148.36083 29918.94148 52427.88828 46003.79792 37741.4004 45595.56387 71284.08746 54837.26143 0.890966214 0.981920512 1.589217962 0.545595106 0.956063211 0.838914941 0.688243713 0.831470476 1.29992063 1 15.7428689 -5.2799133 24.98534493 0.866471558 1.136823579 0.195575586 0.252892777 1308.44664 1769626.708 0.071033357 0.105565503 5.25E-06 5.2799133 0.270352021 RVS(ph)LVGADDLR ddPTM_HeLa_A485_30min_R1 3 RVSLVGADDLR 11 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RVS(1)LVGADDLR;RVS(1)LVGADDLR;RVS(1)LVGADDLR ;; 139.49 4.95E-06 1210120000 890650 887390 648300 800000 668430 838030 952200 916830 900000 1608650 TRUE FALSE FALSE 1088772.02 991162.5412 888133.148 843701.9743 601878.7622 881907.955 748754.6912 691976.005 1080621.745 1207643.16 0.901567662 0.820741237 0.735426803 0.698635162 0.498391232 0.730271975 0.620013193 0.57299708 0.894818752 1 20.20376279 -7.947381224 5.641896951 0.999054833 0.695321896 0.465703677 0.109923062 0.154122582 9.851821391 0.113999333 0.029635846 1.13E-08 7.947381224 -0.303732936 RVS(ph)LVGADDLR ddPTM_HeLa_A486_30min_R1 4 RVSLVGADDLR 11 1 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RVS(1)LVGADDLR;RVS(1)LVGADDLR;RVS(1)LVGADDLR;RVS(1)LVGADDLR ;;; 143.28 6.19E-07 1118970000 1105560 1221630 1331550 361332 1699730 1273470 1180820 1177390 1437450 1519460 TRUE FALSE FALSE 1028065.953 1124823.59 1847161.82 841199.1567 1486534.014 1116362.219 885366.3466 909323.9992 1562049.323 1138977.326 0.902621966 0.987573294 1.62177225 0.738556543 1.305148031 0.980144375 0.777334479 0.798368834 1.371449008 1 20.1193076 -6.491191073 24.12557338 0.956950282 1.115010564 0.047031919 0.269647705 1250.497044 952073.597 0.093566241 0.082422084 3.23E-07 6.491191073 0.158060282 RVS(ph)LVGADDLRK ddPTM_HeLa_A485_30min_R1 2 RVSLVGADDLRK 12 2 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RVS(1)LVGADDLRK;RVS(1)LVGADDLRK ; 109.35 0.00020099 313550000 203512 189194 123435 228926 146029 222219 272800 272210 189540 442120 TRUE FALSE FALSE 248782.5423 211318.5925 169098.7431 241431.6477 131489.84 233854.0432 214514.0514 205450.0707 227578.9394 331907.6206 0.749553571 0.636678941 0.509475326 0.72740616 0.396163968 0.704575697 0.646306496 0.618997751 0.685669522 1 18.34042223 -8.743017184 0.938122289 1.002959659 0.615473502 0.559506973 0.099538794 2.51625549 2.601645971 0.108718257 0.030336301 1.81E-09 8.743017184 -0.387486157 RVS(ph)LVGADDLRK ddPTM_HeLa_A486_30min_R1 2 RVSLVGADDLRK 12 2 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JMS7;A0A0G2JPP5;Q14160-2;Q14160-3;H0YCG0 A0A0G2JNZ2 SCRIB Protein scribble homolog 1 0 RVS(1)LVGADDLRK;RVS(1)LVGADDLRK ; 106.36 0.00024059 222770000 191884 182892 149496 76496 275080 252970 239020 239820 218290 342200 TRUE FALSE FALSE 178433.9225 168398.9718 207384.8548 178086.5539 240576.9014 221761.1334 179214.6679 185218.2212 237211.553 256510.8927 0.69561928 0.656498327 0.808483619 0.694265074 0.937881814 0.864529109 0.698662993 0.722067665 0.924762105 1 17.96866057 -14 0.051243894 1.8668837 0.351276954 0.449458881 0.087107462 562.2611397 2.123010249 66.26364928 14.25612841 1.00E-14 14 -1.515606746 RVS(ph)PLNLSS(ph)VTP ddPTM_HeLa_A486_30min_R1 1 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 2 0 RVS(1)PLNLS(0.031)S(0.839)VT(0.131)P 65.374 0.0086265 220730000 463710 547090 527680 169370 785220 503630 626400 679050 453670 477490 TRUE FALSE FALSE 431206.3236 503736.5959 732011.8278 394301.9195 686730.3857 441497.2511 469668.0946 524445.1386 492994.4809 357923.3961 1.204744726 1.407386613 2.045163395 1.101637735 1.918651849 1.233496486 1.312202834 1.465244084 1.377374283 1 18.44929132 RVS(ph)PLNLSSVT(ph)P ddPTM_HeLa_A485_30min_R1 1 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 2 0 RVS(1)PLNLSSVT(1)P 126.26 0.0032341 333760000 408780 641530 630390 476070 946000 669480 884070 1170100 634220 667950 TRUE FALSE FALSE 499711.7007 716551.3529 863597.4937 502076.4986 851812.9184 704532.9376 695181.2223 883131.1404 761502.1366 501442.3577 0.996548642 1.428980504 1.722226853 1.001264634 1.698725497 1.405012813 1.386363181 1.761181772 1.518623477 1 18.93572434 -4.267863943 5.445035939 1.461982251 0.98066936 0.2053894 0.255221474 0.202489835 22.78760248 0.059943034 0.362211609 5.40E-05 4.267863943 -0.481312891 RVS(ph)PLNLSSVT(ph)P ddPTM_HeLa_A486_30min_R1 2 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 2 0 RVS(1)PLNLSS(0.098)VT(0.902)P;RVS(1)PLNLSSVT(1)P ; 132.4 0.0019324 627920000 927020 1122950 1018110 328690 1451560 1001130 1234010 1379430 915600 996230 TRUE FALSE FALSE 862040.6851 1033963.352 1412349.458 765206.9311 1269491.81 877620.7593 925247.646 1065363.902 994964.9452 746767.5236 1.154362848 1.384585322 1.891283985 1.0246923 1.699982618 1.1752262 1.239003594 1.42663395 1.332362367 1 19.51029966 RVS(ph)PLNLSSVTP ddPTM_HeLa_A485_30min_R1 4 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 RVS(0.999)PLNLS(0.001)SVTP;RVS(1)PLNLSSVTP;RVS(1)PLNLSSVTP;RVS(1)PLNLSSVTP ;;; 86.944 0.006738 5912523000 969080 1600160 1676630 1068990 1701810 1465380 1636690 1837970 1368350 1471630 TRUE FALSE FALSE 1184648.503 1787284.792 2296885.207 1127386.217 1532371.821 1542105.031 1286997.811 1387204.976 1642965.294 1104779.724 1.072293849 1.617774795 2.079043593 1.020462443 1.387038327 1.395848418 1.164936125 1.255639423 1.487142873 1 20.07532732 -5.294435966 24.99883088 1.264027746 1.592511756 0.253504133 0.270035427 903.4361123 684458.1365 0.076039759 0.112794265 5.08E-06 5.294435966 0.32848401 RVS(ph)PLNLSSVTP ddPTM_HeLa_A486_30min_R1 6 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 RVS(1)PLNLSSVTP;RVS(0.999)PLNLSSVTP;RVS(1)PLNLSSVTP;RVS(1)PLNLSSVTP;RVS(1)PLNLSSVTP;RVS(1)PLNLSSVTP ;;;;; 113.53 0.00087422 6438671000 3293090 3991420 3694030 1162895 4550030 3386190 3764700 3949680 3263930 3750210 TRUE FALSE FALSE 3062261.397 3675125.343 5124457.346 2707278.329 3979322.81 2968436.306 2822732.241 3050424.085 3546850.08 2811133.006 1.089333514 1.307346659 1.822915292 0.963055936 1.415558354 1.05595726 1.004126178 1.085122646 1.261715498 1 21.42272028 -6.027656727 1.486317517 1.084360907 1.354746631 0.191997454 0.225712521 0.655131355 2.953103001 0.092971359 0.101505292 9.38E-07 6.027656727 0.270385724 RVS(ph)RT(ph)PEPK ddPTM_HeLa_A485_30min_R1 3 RVSRTPEPK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK ;; 89.43 0.013264 63920550000 32636900 33502030 29617880 46048270 46195570 40032800 55631150 54364160 36163210 61119770 TRUE FALSE FALSE 39896865.81 37419800.98 40574766.31 48563770.39 41596176.85 42128855.51 43745100.34 41031264.52 43420834.54 45883736.17 0.869520862 0.815535179 0.884295171 1.058409241 0.906556011 0.918165325 0.953390111 0.894244191 0.946322993 1 25.45147953 -5.008234199 24.59686266 0.947935527 0.844374777 0.4876783 0.046789786 266.1259515 794970.9574 0.012256486 0.023751252 9.81E-06 5.008234199 -0.10356075 RVS(ph)RT(ph)PEPK ddPTM_HeLa_A486_30min_R1 3 RVSRTPEPK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK;RVS(1)RT(1)PEPK ;; 65.805 0.016356 64440400000 51128500 45842500 32120400 26624800 49994500 54818200 68773000 64062400 39168800 75035000 TRUE FALSE FALSE 47544656.18 42209773.34 44558279.09 61983879.94 43723723.63 48055287.83 51565267.99 49476789.99 42563983.12 56245747.6 0.845302235 0.750452703 0.792207073 1.102018954 0.77736941 0.854380818 0.916785183 0.879653878 0.756750242 1 25.74524069 -11.62686213 2.206179487 4.483195023 0.855812635 0.168109401 0.098045507 6106237.435 402710.2438 107386515.1 0.024912581 2.36E-12 11.62686213 -3.627382387 RVS(ph)RT(ph)PEPKK ddPTM_HeLa_A485_30min_R1 1 RVSRTPEPKK 10 3 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RVS(1)RT(1)PEPKK 46.481 0.031674 169100000 173820 281590 146590 202970 267680 339410 553190 796990 173380 293220 TRUE FALSE FALSE 212485.6593 314519.501 200819.7411 214057.7372 241028.8393 357180.9828 434996.4374 601526.9529 208175.7757 220125.6503 0.965292591 1.428818043 0.912295958 0.97243432 1.09496026 1.62262318 1.976127892 2.732652701 0.945713393 1 17.74796774 -6.341689147 3.538439926 1.806174013 1.075998813 0.236085754 0.495590912 0.296322925 7.149809684 0.178279274 0.15736367 4.55E-07 6.341689147 -0.730175201 RVS(ph)RTPEPK ddPTM_HeLa_A485_30min_R1 2 RVSRTPEPK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RVS(0.5)RT(0.5)PEPK;RVS(0.5)RT(0.5)PEPK ; 72.34 0.0094574 95446000 86240 168434 108352 83255 146059 174421 219380 384110 137397 159071 TRUE FALSE FALSE 105423.7905 188130.8911 148435.9137 87803.00984 131516.8531 183553.4139 172507.6708 289906.4202 164971.3176 119417.5272 0.882816727 1.575404344 1.242999392 0.73526066 1.101319515 1.537072641 1.444575808 2.427670603 1.381466536 1 16.86565507 -6.434776981 2.599214424 1.677455933 1.120752163 0.221435654 0.399129483 0.380127051 5.038258798 0.159173971 0.132192833 3.67E-07 6.434776981 -0.55670377 RVS(ph)S(ph)SSELDLPSGDHCEAGLLQLDVPLLR ddPTM_HeLa_A486_30min_R1 1 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 RVS(0.484)S(0.516)S(0.516)S(0.484)ELDLPSGDHCEAGLLQLDVPLLR 88.242 0.0024892 12516000 5171.7 4338.7 7721.5 1909 6909.3 5144.5 5985.8 6652.9 4299 4139.9 TRUE FALSE FALSE 4809.190537 3994.885611 10711.47159 4444.248476 6042.671167 4509.823895 4488.089529 5138.179902 4671.640781 3103.242094 1.54973102 1.287326444 3.451703498 1.432130766 1.947212298 1.453262027 1.446258266 1.655745748 1.505406488 1 11.59956054 -6.11085514 1.764461027 1.444961248 1.997826681 0.162801289 0.581714059 0.734432191 4.555575621 0.233846411 0.237976926 7.75E-07 6.11085514 0.552865433 RVS(ph)SDLQHATAQLSLEHR ddPTM_HeLa_A485_30min_R1 3 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 RVS(0.5)S(0.5)DLQHATAQLSLEHR;RVS(0.836)S(0.164)DLQHATAQLSLEHR;RVS(0.5)S(0.5)DLQHATAQLSLEHR ;; 236.78 2.73E-45 923220000 1386180 881250 594850 2723460 1162280 917230 1944710 1306110 911440 3841300 TRUE FALSE FALSE 1694530.959 984304.5216 814909.7688 2872235.724 1046559.322 965254.7445 1529206.822 985784.4746 1094357.648 2883734.604 0.58761682 0.341329788 0.282588338 0.996012504 0.362918044 0.334723848 0.530286948 0.341842995 0.379493191 1 21.45950697 -10.32185432 3.203770153 1.003610991 0.460592349 0.394717883 0.199909459 50594373.59 68960937.06 1743101.869 0.051898719 4.77E-11 10.32185432 -0.543018641 RVS(ph)SDLQHATAQLSLEHR ddPTM_HeLa_A486_30min_R1 1 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 RVS(0.667)S(0.333)DLQHATAQLSLEHR 190.63 3.33E-18 174010000 277830 247120 97046 132700 206770 402310 559330 448350 202220 623420 TRUE FALSE FALSE 258355.5517 227537.3112 134624.8102 308932.3063 180834.9785 352677.0826 419379.718 346270.4924 219748.5924 467311.5742 0.552855024 0.486907074 0.28808362 0.661084217 0.386968756 0.754693661 0.897430625 0.740984199 0.470239995 1 18.83402524 -6.274711359 23.24151538 0.764278835 0.475765067 0.475248025 0.156175074 287.1841204 502906.2662 0.054018316 0.047975434 5.31E-07 6.274711359 -0.288513768 RVS(ph)SSSELDLPSGDHCEAGLLQLDVPLLR ddPTM_HeLa_A485_30min_R1 1 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 RVS(0.25)S(0.25)S(0.25)S(0.25)ELDLPS(0.001)GDHCEAGLLQLDVPLLR 114.12 0.00012455 73382000 20905 23790 25269 19175 34290 22835 23050 33065 30317 27789 TRUE FALSE FALSE 25555.24513 26572.03355 34617.05463 20222.4817 30875.9672 24030.60529 18125.1792 24955.75691 36401.34382 20861.71372 1.224983023 1.273722471 1.659358148 0.969358604 1.480030242 1.151899869 0.868825037 1.196246734 1.744887515 1 14.34857005 -5.27167471 24.99088237 1.205447763 1.374791356 0.092706046 0.263484407 1897.487708 4632957.911 0.074888375 0.112495758 5.35E-06 5.27167471 0.169343592 RVS(ph)STWTTTTSATGLPTLEPAPVR ddPTM_HeLa_A485_30min_R1 2 RVSSTWTTTTSATGLPTLEPAPVR 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RVS(0.306)S(0.087)T(0.125)WT(0.051)T(0.074)T(0.107)T(0.241)S(0.01)ATGLPTLEPAPVR;RVS(0.635)S(0.256)T(0.103)WT(0.001)T(0.001)T(0.002)T(0.003)SATGLPTLEPAPVR ; 189.98 5.58E-21 1297670000 48759 45524 54257 62172 42295 34923 44233 44973 29085 60023 TRUE FALSE FALSE 59605.27133 50847.63579 74328.92212 65568.29893 38083.96129 36751.51428 34782.2582 33943.30124 34922.09272 45060.37074 1.322786971 1.128433587 1.649540847 1.45512116 0.845176386 0.815606123 0.771903507 0.753284997 0.775006777 1 15.45957156 -5.774291929 11.97203651 0.811049358 1.389008025 0.801390663 0.13696226 0.218053789 200.5922202 0.043795613 0.050930158 1.68E-06 5.774291929 0.577958667 RVS(ph)STWTTTTSATGLPTLEPAPVR ddPTM_HeLa_A486_30min_R1 2 RVSSTWTTTTSATGLPTLEPAPVR 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RVS(0.531)S(0.106)T(0.106)WT(0.04)T(0.055)T(0.076)T(0.076)S(0.011)ATGLPTLEPAPVR;RVS(0.404)S(0.092)T(0.136)WT(0.011)T(0.015)T(0.154)T(0.154)S(0.034)ATGLPTLEPAPVR ; 156.4 4.85E-10 1422670000 201703 217482 158292 79228 183403 175642 168306 173508 217589 150247 TRUE FALSE FALSE 187564.6613 200247.9343 219586.9016 184446.788 160398.8856 153973.0758 126194.0586 134004.0161 236449.7897 112624.1733 1.665403224 1.778019127 1.94973153 1.637719351 1.424195898 1.367140565 1.120488213 1.189833516 2.099458605 1 16.78115699 -5.680645875 2.766156745 1.357261954 1.796672852 0.323475088 0.28415082 0.322108908 4.998789244 0.089650233 0.118285494 2.09E-06 5.680645875 0.439410899 RVS(ph)TDLPEGQDVYTAACNSVIHR ddPTM_HeLa_A485_30min_R1 2 RVSTDLPEGQDVYTAACNSVIHR 23 1 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 RVS(0.96)T(0.04)DLPEGQDVYTAACNSVIHR;RVS(0.794)T(0.206)DLPEGQDVYTAACNSVIHR ; 233 3.08E-39 1143910000 327033 462700 459480 269642 481700 389270 491570 465670 401070 423330 TRUE FALSE FALSE 399780.3626 516808.74 629460.7726 284371.8597 433740.2566 409651.5753 386542.0537 351463.7024 481561.0702 317801.6218 1.257955703 1.62619919 1.980671996 0.894809341 1.364814485 1.289016629 1.216299815 1.105921676 1.515288271 1 18.27776696 -5.264810417 24.99991133 1.213937644 1.622067977 0.409988752 0.232312271 292.9448796 2172508.07 0.063598376 0.098933586 5.43E-06 5.264810417 0.408130333 RVS(ph)TDLPEGQDVYTAACNSVIHR ddPTM_HeLa_A486_30min_R1 1 RVSTDLPEGQDVYTAACNSVIHR 23 1 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 RVS(0.792)T(0.208)DLPEGQDVYTAACNSVIHR 141.38 7.52E-09 413820000 135330 150010 129590 18794 179830 111400 135040 136470 117430 102490 TRUE FALSE FALSE 125844.0658 138122.6613 179770.7185 43753.3818 157274.0446 97656.60063 101251.5637 105398.7601 127608.927 76825.8369 1.63804354 1.797867317 2.339977354 0.569513897 2.047150424 1.271142685 1.317936358 1.371918151 1.661015774 1 16.22930396 -1.000000001 0.085021594 0.710709412 3.747612273 0.160769846 0.444693485 319.5147983 1.971326212 9.885779223 113.4785589 0.1 1.000000001 3.036902861 RVS(ph)VCAETYNPDEEEEDTDPR ddPTM_HeLa_A485_30min_R1 8 RVSVCAETYNPDEEEEDTDPR 21 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(0.989)VCAET(0.007)Y(0.003)NPDEEEEDTDPR;RVS(0.877)VCAET(0.088)Y(0.035)NPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR ;;;;;;; 188.22 1.39E-19 47298530000 5961366 6821420 9174102 5780569 8688440 6636191 8220508 8253480 6639998 7178040 TRUE FALSE FALSE 7287451.3 7619125.731 12567984.1 6096346.847 7823388.407 6983651.699 6464129.31 6229301.089 7972584.693 5388686.73 1.352361283 1.413911424 2.332290728 1.131323299 1.451817261 1.295983984 1.199574151 1.155996145 1.479504208 1 22.36150229 RVS(ph)VCAETYNPDEEEEDTDPR ddPTM_HeLa_A486_30min_R1 5 RVSVCAETYNPDEEEEDTDPR 21 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR ;;;; 257.04 4.81E-59 48141400000 3580400 4842050 4344100 1493746 5493530 3988980 4691380 4692380 3745050 3999370 TRUE FALSE FALSE 3329432.449 4458348.324 6026251.859 3477516.178 4804480.242 3496860.205 3517547.104 3624027.508 4069673.949 2997901.72 1.110587591 1.487156264 2.010156576 1.159983382 1.602614325 1.166435904 1.173336364 1.208854674 1.35750746 1 21.51552166 -6.272410002 24.53199242 1.19378712 1.487155035 0.26133809 0.245246196 829.0917544 1853970.743 0.08615602 0.076732176 5.34E-07 6.272410002 0.293367915 RVS(ph)VELTNSLFK ddPTM_HeLa_A485_30min_R1 2 RVSVELTNSLFK 12 1 P14923 P14923 JUP Junction plakoglobin 1 0 RVS(1)VELTNSLFK;RVS(1)VELTNSLFK ; 224.67 2.28E-23 1197280000 1243530 922400 687540 1270770 909250 1000930 1232750 1075540 954530 2298300 TRUE FALSE FALSE 1520148.958 1030266.656 941889.6569 1340188.947 818721.8774 1053337.147 969362.8919 811762.1286 1146095.416 1725376.107 0.881053674 0.597125839 0.545903964 0.776751771 0.474517918 0.610497122 0.561827006 0.47048416 0.664258309 1 20.71847945 -8.033146001 23.40496172 1.000000003 0.607995325 0.474247917 0.120779301 1772.337784 1251477.092 0.114142358 0.02947143 9.27E-09 8.033146001 -0.392004678 RVS(ph)VELTNSLFK ddPTM_HeLa_A486_30min_R1 2 RVSVELTNSLFK 12 1 P14923 P14923 JUP Junction plakoglobin 1 0 RVS(1)VELTNSLFK;RVS(1)VELTNSLFK ; 218.12 3.89E-23 1616440000 973710 1190910 910480 455040 1340490 1328080 1312250 1275620 1181130 1358600 TRUE FALSE FALSE 905457.9572 1096537.954 1263042.24 1059356.116 1172353.245 1164234.993 983911.1704 985189.1726 1283511.299 1018397.717 0.889100537 1.076728606 1.240224932 1.040218471 1.151174266 1.143202673 0.966136465 0.96739138 1.260324211 1 19.95786966 -9.372046717 14.15576858 0.999999371 1.082017101 0.043775058 0.114415385 0 0 0.110014094 0.026682337 4.25E-10 9.372046717 0.082017729 RVS(ph)WSSFNSLGQYFTGK ddPTM_HeLa_A485_30min_R1 1 RVSWSSFNSLGQYFTGK 17 1 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 RVS(0.942)WS(0.021)S(0.036)FNSLGQYFTGK 190.63 3.38E-18 57415000 107170 113920 108100 107500 136300 109870 147350 151930 110200 139100 TRUE FALSE FALSE 131009.5968 127241.953 148090.6884 113372.4528 122729.4934 115622.6233 115867.4688 114668.9293 132316.1292 104424.9299 1.25458161 1.218501684 1.418154539 1.085683781 1.17528921 1.107231993 1.109576696 1.098099174 1.267093301 1 16.67210665 -5.282611237 24.98852133 1.125796641 1.289221537 0.504253471 0.080029955 645.4261241 761776.0093 0.02160746 0.032086846 5.22E-06 5.282611237 0.163424895 RVS(ph)WSSFNSLGQYFTGK ddPTM_HeLa_A486_30min_R1 2 RVSWSSFNSLGQYFTGK 17 1 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 RVS(0.902)WS(0.036)S(0.059)FNS(0.002)LGQYFTGK;RVS(0.958)WS(0.021)S(0.021)FNSLGQYFTGK ; 201.31 2.76E-25 111614000 336390 359840 294990 142079 411660 338030 419120 419380 293680 379220 TRUE FALSE FALSE 312810.7981 331324.9679 409218.0281 330767.0923 360025.7642 296327.2954 314251.743 323896.329 319136.4189 284260.8437 1.100435762 1.16556668 1.439586342 1.163604132 1.266533088 1.042448519 1.105504856 1.139433503 1.122688636 1 18.11685586 -6.257642172 24.98828257 1.092197805 1.2319964 0.379660452 0.092194572 390.6698865 2570883.727 0.031663675 0.030483522 5.53E-07 6.257642172 0.139798595 RVSGPDPKPGSNCSPAQS(ph)VLSEVPSVPTNGMAK ddPTM_HeLa_A485_30min_R1 1 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS2;Q5JRS0;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RVS(0.017)GPDPKPGS(0.309)NCS(0.309)PAQS(0.351)VLS(0.013)EVPSVPTNGMAK 79.458 0.00029684 294950000 201070 213250 156330 235130 296540 262790 367480 421030 188880 346760 TRUE FALSE FALSE 245797.3278 238187.7325 214162.9724 247974.5565 267015.4364 276549.278 288964.896 317771.7324 226786.4835 260319.1136 0.944215445 0.914983649 0.822693998 0.952579137 1.025723515 1.062347187 1.110041026 1.220700731 0.871186446 1 17.98992172 -5.746933824 2.448786527 1.06835038 0.895114786 0.382900957 0.087973574 0.270723007 3.326660677 0.028495026 0.036497254 1.79E-06 5.746933824 -0.173235594 RVSHS(ph)PPPK ddPTM_HeLa_A485_30min_R1 2 RVSHSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RVS(0.2)HS(0.8)PPPK;RVS(0.076)HS(0.924)PPPK ; 60.49 0.025499 200339000 130986 142168 95567 153981 101651 135757 148915 168577 133785 218234 TRUE FALSE FALSE 160123.3838 158793.3109 130921.2102 162392.5921 91530.26952 142865.0266 117098.0937 127233.2264 160634.4224 163832.2801 0.977361627 0.969243124 0.799117305 0.991212428 0.558682754 0.87202001 0.714743722 0.776606578 0.980480906 1 17.32186012 -4.715509197 1.489450987 0.814759136 1.002408899 0.117573236 0.132708725 0.987879703 3.56020866 0.038258773 0.216096311 1.93E-05 4.715509197 0.187649763 RVSHS(ph)PPPK ddPTM_HeLa_A486_30min_R1 1 RVSHSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RVS(0.063)HS(0.937)PPPK 48.115 0.033083 96893000 186000 105950 111020 78970 101750 228790 173720 159890 147130 216220 TRUE FALSE FALSE 172962.3605 97554.13614 154009.9172 183846.1509 88987.56622 200564.216 130253.4186 123486.5374 159883.3469 162077.1046 1.067160972 0.601899549 0.950226237 1.134312902 0.549044644 1.23746174 0.803650947 0.761899947 0.986464727 1 17.30632078 RVSLEPHQGPGT(ph)PESK ddPTM_HeLa_A486_30min_R1 1 RVSLEPHQGPGTPESK 16 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RVSLEPHQGPGT(1)PESK 164.94 5.15E-12 921160000 944590 761320 521390 78581 918870 701460 874530 918680 688250 776950 TRUE FALSE FALSE 878379.1189 700990.2305 723286.1713 182940.5393 803616.7565 614920.9971 655713.3442 709516.6186 747908.0642 582396.6629 1.508214547 1.203630232 1.241913317 0.314116737 1.37984437 1.055845674 1.12588788 1.218270405 1.284190161 1 19.15164256 -7.090806182 5.39462657 1.187300235 1.101404521 0.002518084 0.306689696 1.539284577 70.50581134 0.150052445 0.085872048 8.11E-08 7.090806182 -0.085895714 RVSRT(ph)PEPK ddPTM_HeLa_A485_30min_R1 1 RVSRTPEPK 9 2 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RVS(0.12)RT(0.88)PEPK 53.252 0.0067625 0 49476 90979 83445 50804 98738 99862 128510 215330 81194 89975 TRUE FALSE FALSE 60481.76551 101618.2026 114314.7779 53579.29388 88907.29803 105090.6199 101052.7887 162519.9799 97488.89104 67545.88837 0.895417426 1.504432099 1.692401724 0.793228058 1.316250333 1.555840369 1.496061287 2.406067694 1.443298673 1 16.04358033 -6.465885467 2.285518905 1.702291684 1.255673181 0.124469826 0.411355387 0.526794419 5.46306246 0.170825495 0.137726024 3.42E-07 6.465885467 -0.446618503 RVSS(ph)DEEHTVDSCISDMK ddPTM_HeLa_A486_30min_R1 1 RVSSDEEHTVDSCISDMK 18 1 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 0 RVS(0.282)S(0.359)DEEHT(0.359)VDSCISDMK 69.922 0.0039752 112790000 86105 89436 53055 23926 89467 109000 132190 120120 75765 123170 TRUE FALSE FALSE 80069.48415 82348.76564 73599.31686 55700.93715 78245.21461 95552.68823 99114.66384 92771.2982 82332.3712 92327.4303 0.867233972 0.89192091 0.797155478 0.603297817 0.847475278 1.034932825 1.073512644 1.004807541 0.891743341 1 16.49447171 -6.151601148 4.74639045 1.005182583 0.790449967 0.589539769 0.083988766 0.174966349 6.196103323 0.030719979 0.030762254 7.05E-07 6.151601148 -0.214732616 RVSS(ph)DLQHATAQLSLEHR ddPTM_HeLa_A485_30min_R1 1 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 RVS(0.482)S(0.518)DLQHATAQLSLEHR 153.88 1.69E-08 483200000 664080 408280 243240 1426800 536210 428890 900220 648060 416080 2002800 TRUE FALSE FALSE 811802.305 456024.7944 333224.5981 1504742.471 482823.0497 451346.0172 707880.6429 489122.2689 499583.4395 1503538.819 0.539927732 0.303300978 0.221626867 1.000800546 0.321124432 0.300189135 0.470809688 0.325314028 0.332271727 1 20.51993069 -10.68421725 2.636669477 1.084775103 0.423213558 0.400041732 0.211641793 32428861.21 27140460.41 18368052.64 0.054883069 2.07E-11 10.68421725 -0.661561545 RVSS(ph)DLQHATAQLSLEHR ddPTM_HeLa_A486_30min_R1 2 RVSSDLQHATAQLSLEHR 18 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 RVS(0.206)S(0.794)DLQHATAQLSLEHR;RVS(0.22)S(0.78)DLQHATAQLSLEHR ; 261.97 5.35E-58 944940000 1496730 1262350 478680 770250 946690 2143020 2996900 2344900 1109300 3396900 TRUE FALSE FALSE 1391816.956 1162316.789 664037.7155 1793180.926 827947.3127 1878635.981 2247043.922 1811017.459 1205455.017 2546294.13 0.546604942 0.456473891 0.260785943 0.704231654 0.325157767 0.737792213 0.882476182 0.711236553 0.473415464 1 21.27996765 -6.285331064 20.66103616 0.750530126 0.461180908 0.445941342 0.168284666 87.61499189 75766.30296 0.057936447 0.051163325 5.18E-07 6.285331064 -0.289349218 RVSS(ph)SSELDLPSGDHCEAGLLQLDVPLLR ddPTM_HeLa_A485_30min_R1 1 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 RVS(0.209)S(0.264)S(0.264)S(0.264)ELDLPSGDHCEAGLLQLDVPLLR 115.71 0.00010305 72114000 11633 18958 19805 9918.7 20383 12690 16398 15928 15552 18764 TRUE FALSE FALSE 14220.72072 21174.97319 27131.69365 10460.53347 18353.59695 13354.42878 12894.43334 12021.63303 18673.14375 14086.48013 1.009529747 1.503212513 1.926080427 0.742593847 1.302922858 0.948031634 0.915376533 0.853416391 1.325607503 1 13.78202354 -5.275048457 24.93758266 1.011816413 1.481968097 0.390420816 0.267427233 744.1735364 1363638.732 0.074700712 0.111463716 5.31E-06 5.275048457 0.470151684 RVSS(ph)SSELDLPSGDHCEAGLLQLDVPLLR ddPTM_HeLa_A486_30min_R1 2 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 RVS(0.279)S(0.366)S(0.177)S(0.177)ELDLPSGDHCEAGLLQLDVPLLR;RVS(0.366)S(0.485)S(0.074)S(0.074)ELDLPSGDHCEAGLLQLDVPLLR ; 166.74 3.88E-14 142780000 30739 34656 29676.9 24275.5 41140 34839 37217 41002 25618.2 58505 TRUE FALSE FALSE 28584.35484 31909.73235 41168.59045 56514.59082 35979.83758 30540.9184 27904.91296 31666.73967 27838.8062 43854.9672 0.651792868 0.727619569 0.938744071 1.288670233 0.820427876 0.696407279 0.636299939 0.722078745 0.634792544 1 15.42045264 -6.001710819 24.99913901 0.719108272 0.91224634 0.145467463 0.183769099 119.4330258 1745244.458 0.060974609 0.068164109 9.96E-07 6.001710819 0.193138068 RVSSDEEHT(ph)VDSCISDMK ddPTM_HeLa_A486_30min_R1 1 RVSSDEEHTVDSCISDMK 18 1 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 0 RVS(0.021)S(0.028)DEEHT(0.95)VDSCISDMK 119.79 8.77E-05 117850000 50087 46845 37528 23233 54855 50180 71471 74020 42124 71437 TRUE FALSE FALSE 46576.15995 43132.83159 52059.84663 54087.59813 47974.5744 43989.30179 53588.19986 57167.26185 45775.34224 53548.71022 0.86979051 0.805487778 0.972196089 1.010063509 0.895905321 0.821482004 1.000737453 1.067574954 0.85483557 1 15.70856421 -1.758434437 0.370339755 0.966581798 4.70E-16 0.167301236 0.078888538 67.86101928 1.604921148 0.066006416 42.61979476 0.017440766 1.758434437 -0.966581798 RVSSDLQHATAQLSLEHRDS(ph) ddPTM_HeLa_A486_30min_R1 1 RVSSDLQHATAQLSLEHRDS 20 2 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 RVSSDLQHATAQLSLEHRDS(1) 91.276 0.00025121 118350000 39472 49000 39558 17096 58790 34186 40181 42350 31612 38900 TRUE FALSE FALSE 36705.21663 45117.06155 54875.917 39800.35198 51416.01001 29968.4789 30127.28881 32707.82949 34352.15361 29159.1868 1.258787389 1.547267482 1.88194264 1.364933537 1.763286828 1.027754275 1.033200583 1.121698959 1.178090248 1 14.83166287 -6.272010524 24.91096557 1.077320706 1.569044294 0.670210937 0.172202268 416.1920272 980756.2061 0.059938139 0.053406742 5.35E-07 6.272010524 0.491723588 RVSSTWTTTT(ph)SATGLPTLEPAPVR ddPTM_HeLa_A485_30min_R1 1 RVSSTWTTTTSATGLPTLEPAPVR 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RVS(0.175)S(0.044)T(0.061)WT(0.08)T(0.108)T(0.201)T(0.275)S(0.055)ATGLPTLEPAPVR 117.03 0.00011299 244790000 70240 63058 77802 73271 68764 38614 46433 53967 41736 69995 TRUE FALSE FALSE 85864.64567 70432.08457 106584.1974 77273.6092 61917.61471 40635.76933 36512.21023 40731.50863 50112.03237 52546.53466 1.634068664 1.340375441 2.028377287 1.47057479 1.178338688 0.773329195 0.694854769 0.775151185 0.953669594 1 15.681308 -5.904506324 2.320474315 0.818599513 1.644063308 0.805281541 0.181087988 0.123523696 1.354126781 0.062796619 0.072976355 1.25E-06 5.904506324 0.825463794 RVT(ph)QHESDNENEIQIQNK ddPTM_HeLa_A485_30min_R1 3 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 RVT(0.615)QHES(0.385)DNENEIQIQNK;RVT(0.5)QHES(0.5)DNENEIQIQNK;RVT(0.622)QHES(0.378)DNENEIQIQNK ;; 219.22 2.05E-34 3527760000 1453860 1988820 1526970 1468380 2172250 2065860 2706950 3143790 1680490 1969110 TRUE FALSE FALSE 1777266.141 2221395.199 2091859.746 1548593.881 1955973.163 2174025.235 2128588.019 2372770.573 2017748.929 1478247.116 1.202279458 1.502722498 1.415094759 1.047587961 1.323170627 1.470677813 1.439940586 1.60512444 1.364960504 1 20.49545603 -6.132357624 6.660321953 1.417364544 1.30041403 0.020187643 0.18528291 0.683197428 34.06490853 0.060557524 0.06067518 7.37E-07 6.132357624 -0.116950514 RVT(ph)QHESDNENEIQIQNK ddPTM_HeLa_A486_30min_R1 2 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 RVT(0.634)QHES(0.366)DNENEIQIQNK;RVT(0.777)QHES(0.223)DNENEIQIQNK ; 211.75 7.34E-26 3027020000 2410760 2371320 1754000 896100 2846510 2244820 2853220 3026750 1938290 2785400 TRUE FALSE FALSE 2241778.173 2183407.967 2433195.774 2086166.086 2489474.173 1967876.932 2139314.178 2337625.098 2106302.538 2087917.71 1.073690865 1.045734684 1.165369575 0.999161067 1.192323893 0.94250694 1.024616137 1.119596375 1.008805341 1 20.99363342 -6.270784961 24.99564593 1.026924189 1.091061423 0.245477592 0.065841218 1170.400465 3130340.634 0.022411816 0.02005618 5.36E-07 6.270784961 0.064137234 RVTFGEDLS(ph)PEVFDESLPANTPLR ddPTM_HeLa_A486_30min_R1 1 RVTFGEDLSPEVFDESLPANTPLR 24 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 RVT(0.202)FGEDLS(0.798)PEVFDESLPANTPLR 59.228 0.014172 34870000 24459 22631 23469 15872 28929 24652 29503 28090 20595 24229 TRUE FALSE FALSE 22744.55041 20837.63714 32556.82532 36950.81813 25300.45507 21610.68688 22121.03735 21694.5202 22380.19118 18161.9007 1.252322143 1.147326895 1.792589105 2.03452374 1.393051063 1.189891259 1.217991317 1.194507148 1.232260409 1 14.14862757 -6.077499216 4.799034746 1.187233143 1.562096915 0.362782847 0.242166388 0.287121518 11.97377677 0.090040664 0.091509896 8.37E-07 6.077499216 0.374863772 RVTIMPK ddPTM_HeLa_A485_30min_R1 2 RVTIMPK 7 1 K7EK07;P84243;Q6NXT2;A0A590UJL8;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 ; ; 103.74 0.0091102 95214000 114751 164365 143699 124746 204051 122817 206664 316830 188942 398150 FALSE FALSE TRUE 140276.9641 183586.057 196859.2399 131560.5581 183734.966 129247.5082 162508.5481 239126.9457 226860.9263 298898.5324 0.46931299 0.614208626 0.658615612 0.440151235 0.614706819 0.432412656 0.543691355 0.800027166 0.758989763 1 18.18929629 -7.710472864 1.239717805 0.975439343 0.539829597 0.745599359 0.086188645 0.213230316 0.649344796 0.080415048 0.026129722 1.95E-08 7.710472864 -0.435609747 RVTIMPK ddPTM_HeLa_A486_30min_R1 2 RVTIMPK 7 1 K7EK07;P84243;Q6NXT2;A0A590UJL8;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 ; ; 84.743 0.0036505 21081000 259384 258626 192807 104616 1114146 246933 318208 307358 209402 237921 FALSE FALSE TRUE 241202.5211 238131.5339 267467.034 243551.335 974399.4197 216468.9171 238588.9927 237379.293 227553.134 178344.033 1.352456356 1.335236901 1.499725163 1.365626486 5.463594174 1.213771571 1.337801937 1.331018981 1.275922329 1 17.44430342 RVTQHES(ph)DNENEIQIQNK ddPTM_HeLa_A485_30min_R1 1 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 RVTQHES(1)DNENEIQIQNK 321.47 7.54E-90 1796000000 429020 608380 435310 419900 736090 696580 807930 998300 497170 576440 TRUE FALSE FALSE 524454.0189 679524.7488 596349.2838 442838.0738 662802.295 733051.8517 635309.1553 753465.3597 596947.4587 432744.1166 1.211926399 1.570269179 1.378064452 1.023325464 1.531626358 1.693961451 1.468094264 1.741133688 1.379446735 1 18.72315468 RVTQHES(ph)DNENEIQIQNK ddPTM_HeLa_A486_30min_R1 2 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 RVTQHES(1)DNENEIQIQNK;RVT(0.008)QHES(0.992)DNENEIQIQNK ; 238.7 1.70E-45 1391190000 704850 648440 468030 231240 810540 677480 826460 787320 532150 791160 TRUE FALSE FALSE 655443.6548 597055.2528 649263.7503 538338.4062 708874.5152 593899.4057 619670.9666 608064.4231 578277.1905 593048.3864 1.105211092 1.00675639 1.094790518 0.907747864 1.195306372 1.001434991 1.044891076 1.025320087 0.975092764 1 19.17779029 -7.499804918 2.166789052 0.987434733 1.049804594 0.108126481 0.071500515 0.765786963 6.596180426 0.056178613 0.018814465 3.16E-08 7.499804918 0.06236986 RVVLGDGVQLPPGDYS(ph)TTPGGT(ph)LFSTTPGGTR ddPTM_HeLa_A485_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.035)S(0.329)T(0.309)T(0.329)PGGT(0.353)LFS(0.227)T(0.214)T(0.201)PGGT(0.003)R 49.767 0.022421 554140000 59003 64592 73986 63750 79641 59919 65916 55656 70979 78038 TRUE FALSE FALSE 72128.01379 72145.47252 101356.5002 67232.50108 71711.6624 63056.26619 51832.50812 42006.27873 85223.83424 58584.56278 1.231177811 1.231475821 1.730088873 1.147614625 1.224070967 1.076329039 0.884746863 0.717019582 1.454714863 1 15.83823294 -5.976740973 1.652395245 0.996196326 1.369228469 0.303650254 0.22545412 0.434361735 2.416993792 0.087262359 0.098434781 1.06E-06 5.976740973 0.373032143 RVVLGDGVQLPPGDYS(ph)TTPGGTLFS(ph)TTPGGTRIIYDRK ddPTM_HeLa_A485_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRK 38 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.062)S(0.631)T(0.147)T(0.16)PGGT(0.005)LFS(0.354)T(0.327)T(0.302)PGGT(0.011)RIIY(0.001)DRK 94.712 3.04E-05 142410000 38344 115360 69675 37332 148640 170220 219330 488850 75896 70044 TRUE FALSE FALSE 46873.49051 128850.3485 95450.68192 39371.35263 133840.8797 179132.456 172468.3537 368958.771 91127.63104 52583.31986 0.891413677 2.450403452 1.815227379 0.748742239 2.545310567 3.406640289 3.279906141 7.016650374 1.733014029 1 15.68231761 -6.122040062 2.698285238 3.691226755 1.570978319 0.205782301 1.563909822 0.373068543 5.278326371 0.542820459 0.54896904 7.55E-07 6.122040062 -2.120248436 RVVLGDGVQLPPGDYSTT(ph)PGGT(ph)LFSTTPGGTR ddPTM_HeLa_A485_30min_R1 3 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.003)S(0.313)T(0.332)T(0.352)PGGT(0.349)LFS(0.229)T(0.216)T(0.204)PGGT(0.001)R;RVVLGDGVQLPPGDY(0.002)S(0.027)T(0.121)T(0.847)PGGT(0.506)LFS(0.413)T(0.08)T(0.003)PGGTR;RVVLGDGVQLPPGDY(0.003)S(0.035)T(0.162)T(0.785)PGGT(0.491)LFS(0.206)T(0.165)T(0.133)PGGT(0.02)R ;; 92.32 0.00032485 3658440000 748974 1079756 1001918 622466 1117994 1022494 1041597 1145396 864159 916693 TRUE FALSE FALSE 915580.6824 1206024.072 1372569.161 656469.7414 1006682.592 1076030.205 819051.2919 864485.8351 1037587.785 688178.3056 1.330441072 1.752487781 1.994496412 0.953923912 1.462822329 1.563592162 1.190173078 1.256194547 1.507731029 1 19.39242289 -7.707892867 0.05640821 3.96E-10 2.60689109 0.23524709 0.269327193 49.47469535 2.490166172 58.13794551 54.15281677 1.96E-08 7.707892867 2.60689109 RVVLGDGVQLPPGDYSTT(ph)PGGT(ph)LFSTTPGGTR ddPTM_HeLa_A486_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.004)S(0.032)T(0.157)T(0.8)PGGT(0.53)LFS(0.205)T(0.161)T(0.109)PGGT(0.002)R 82.384 0.00081171 384260000 186830 241920 209380 82313 262860 184440 225600 249580 175060 243840 TRUE FALSE FALSE 173734.1818 222749.3781 290457.5434 191628.8239 229889.6477 161685.668 169152.4938 192756.0823 190234.3418 182780.8769 0.950505243 1.218668944 1.589102473 1.0484074 1.257733586 0.884587441 0.925438682 1.054574667 1.040778144 1 17.47975561 -6.252101457 24.84553721 0.981009383 1.224968441 0.337776816 0.16184585 730.8540899 1944594.083 0.055334372 0.054611544 5.60E-07 6.252101457 0.243959058 RVVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_HeLa_A485_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.003)S(0.048)T(0.187)T(0.758)PGGT(0.016)LFS(0.391)T(0.291)T(0.264)PGGT(0.042)R 78.226 0.00069963 510920000 133800 181840 194020 135090 213350 194030 234180 214240 177090 178670 TRUE FALSE FALSE 163563.3484 203104.6062 265796.0718 142469.6246 192108.1249 204189.1108 184145.5299 161697.3041 212630.3386 134130.8572 1.219431172 1.514227304 1.981617634 1.062168897 1.432244071 1.522312726 1.372879692 1.205519054 1.585245507 1 17.03328165 -12.36426025 0.235802039 6.46E-10 1.489599398 0.21752237 0.241579965 108.6850267 2.173276562 53.53195598 0.412616267 4.32E-13 12.36426025 1.489599397 RVVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_HeLa_A486_30min_R1 2 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.195)S(0.242)T(0.267)T(0.295)PGGT(0.008)LFS(0.355)T(0.328)T(0.303)PGGT(0.007)R;RVVLGDGVQLPPGDY(0.009)S(0.305)T(0.329)T(0.354)PGGT(0.043)LFS(0.344)T(0.319)T(0.296)PGGT(0.003)R ; 66.72 0.0021957 1525030000 34041 30933 29748 10627 41426 29420 39330 41231 30158 36723 TRUE FALSE FALSE 31654.90169 28481.75642 41267.22228 24740.19306 36229.9648 25790.45952 29489.21801 31843.60137 32772.11972 27527.32177 1.149944842 1.034672267 1.499136844 0.898750458 1.31614565 0.93690406 1.071270872 1.156799838 1.19053063 1 14.74857663 -5.303312422 24.99979728 1.09134695 1.208594792 0.146197957 0.158887684 1090.599528 651127.172 0.043077747 0.063895025 4.97E-06 5.303312422 0.117247842 RVVLGDGVQLPPGDYSTT(ph)PGGTLFST(ph)TPGGTR ddPTM_HeLa_A486_30min_R1 2 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.001)S(0.028)T(0.234)T(0.735)PGGT(0.005)LFS(0.05)T(0.568)T(0.376)PGGT(0.003)R;RVVLGDGVQLPPGDYS(0.002)T(0.008)T(0.989)PGGT(0.001)LFS(0.152)T(0.538)T(0.31)PGGTR ; 189.3 5.64E-21 3809310000 1590010 1657640 1666530 616820 2183790 1516750 1831820 1898780 1400890 1837680 TRUE FALSE FALSE 1478558.51 1526282.569 2311855.047 1435988.132 1909878.695 1329628.806 1373479.261 1466469.244 1522320.273 1377512.967 1.073353606 1.107998695 1.678281877 1.042449811 1.38646876 0.965238686 0.997071748 1.064577452 1.105122282 1 20.39363447 -6.271030754 24.90827602 1.028604976 1.26079937 0.301838823 0.175847021 854.9620202 2220283.411 0.061315254 0.054763582 5.36E-07 6.271030754 0.232194394 RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_A485_30min_R1 9 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.002)S(0.038)T(0.169)T(0.79)PGGT(0.004)LFS(0.182)T(0.176)T(0.634)PGGT(0.005)R;RVVLGDGVQLPPGDY(0.003)S(0.049)T(0.149)T(0.798)PGGT(0.09)LFS(0.196)T(0.149)T(0.466)PGGT(0.101)R;RVVLGDGVQLPPGDYS(0.001)T(0.016)T(0.962)PGGT(0.021)LFS(0.027)T(0.071)T(0.898)PGGT(0.004)R;RVVLGDGVQLPPGDYS(0.004)T(0.056)T(0.939)PGGT(0.001)LFS(0.003)T(0.03)T(0.876)PGGT(0.091)R;RVVLGDGVQLPPGDY(0.01)S(0.039)T(0.089)T(0.845)PGGT(0.022)LFS(0.067)T(0.1)T(0.791)PGGT(0.037)R;RVVLGDGVQLPPGDY(0.004)S(0.034)T(0.176)T(0.779)PGGT(0.295)LFS(0.154)T(0.119)T(0.437)PGGT(0.002)R;RVVLGDGVQLPPGDY(0.002)S(0.043)T(0.153)T(0.802)PGGT(0.008)LFS(0.039)T(0.029)T(0.924)PGGT(0.001)R;RVVLGDGVQLPPGDY(0.016)S(0.04)T(0.162)T(0.771)PGGT(0.048)LFS(0.155)T(0.141)T(0.631)PGGT(0.037)R;RVVLGDGVQLPPGDY(0.004)S(0.101)T(0.285)T(0.609)PGGT(0.001)LFS(0.075)T(0.049)T(0.831)PGGT(0.045)R ;;;;;;;; 178.9 1.33E-20 13630270000 2753064 4250020 3976830 2588329 4574160 3917170 4517440 4745960 3370354 3738160 TRUE FALSE FALSE 3365473.589 4747022.869 5448024.907 2729722.859 4118740.57 4122266.964 3552252.04 3582005.869 4046753.133 2806305.508 1.199254172 1.691555982 1.941351322 0.972710509 1.467673622 1.468930219 1.265810878 1.276413369 1.442021591 1 21.42024065 -12.55600067 0.111375099 9.38E-10 1.692431297 0.21355868 0.250483443 170.406513 1.757318672 42.98673065 3.406006911 2.78E-13 12.55600067 1.692431296 RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_A486_30min_R1 4 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.02)S(0.105)T(0.417)T(0.451)PGGT(0.32)LFS(0.16)T(0.129)T(0.375)PGGT(0.023)R;RVVLGDGVQLPPGDYS(0.002)T(0.026)T(0.971)PGGT(0.001)LFS(0.002)T(0.006)T(0.985)PGGT(0.007)R;RVVLGDGVQLPPGDY(0.001)S(0.021)T(0.114)T(0.864)PGGTLFS(0.346)T(0.161)T(0.493)PGGTR;RVVLGDGVQLPPGDY(0.008)S(0.01)T(0.045)T(0.933)PGGT(0.019)LFS(0.282)T(0.044)T(0.632)PGGT(0.026)R ;;; 163.71 3.97E-14 2175006000 928357 963511 907152 319709.6 1259024 861109 1015613 1082070 816481.8 1067674 TRUE FALSE FALSE 863283.9683 887158.8793 1258425.549 744300.106 1101105.47 754874.1267 761495.8853 835706.2824 887255.0998 800321.481 1.078671495 1.108503146 1.572400065 0.93000141 1.375828959 0.943213627 0.9514875 1.044213235 1.108623373 1 19.61022011 -6.279975767 24.96374051 1.008644615 1.211506669 0.267521075 0.168413113 1143.857984 1540477.504 0.057766965 0.051040414 5.25E-07 6.279975767 0.202862054 RVVLGDGVQLPPGDYSTTPGGTLFS(ph)TTPGGTR ddPTM_HeLa_A485_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 RVVLGDGVQLPPGDYS(0.001)T(0.003)T(0.004)PGGT(0.088)LFS(0.282)T(0.282)T(0.282)PGGT(0.058)R 61.28 0.0066377 123970000 58239 108040 102610 55640 103580 103690 116670 147520 94942 112480 TRUE FALSE FALSE 71194.06463 120674.3382 140569.709 58679.47231 93267.21151 109119.0481 91742.50139 111340.4887 113995.9885 84440.80604 0.843123935 1.42909979 1.664713017 0.694918429 1.104527726 1.292254932 1.086471171 1.318562599 1.350010663 1 16.36565273 -4.23784608 23.4153616 1.218222578 0.843122911 0.165689443 0.250697673 5370.744506 5330044.815 0.063784869 3.254948074 5.78E-05 4.23784608 -0.375099666 RVVLGDGVQLPPGDYSTTPGGTLFSTT(ph)PGGTR ddPTM_HeLa_A486_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 RVVLGDGVQLPPGDYSTTPGGT(0.008)LFS(0.217)T(0.175)T(0.554)PGGT(0.046)R 71.423 0.00127 197340000 43851 44041 49310 19862 58283 41411 52411 58275 44469 61349 TRUE FALSE FALSE 40777.27135 40551.03077 68404.15257 46239.73977 50972.60267 36302.13186 39297.21345 45007.05463 48323.60872 45986.81109 0.886716656 0.881796972 1.487473277 1.005500027 1.108417859 0.789403114 0.854532257 0.978694838 1.050814518 1 15.48893254 -6.22853306 24.693697 0.928347537 1.082471394 0.13913791 0.172231191 1123.954086 843442.4866 0.059225922 0.05922207 5.91E-07 6.22853306 0.154123856 RVVQHTK(ac)GCK ddPTM_HeLa_A485_30min_R1 1 RVVQHTKGCK 10 2 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 RVVQHTK(1)GCK 84.17 0.031549 6547700 5392.5 7699.6 8354.1 6749.7 9581.2 7186.6 9133 11379 11857 11246 FALSE TRUE FALSE 6592.043021 8600.001242 11444.62923 7118.41902 8627.262086 7562.879263 7181.65994 8588.282408 14236.59114 8442.579167 0.780809145 1.018646207 1.355584473 0.843156917 1.021875178 0.895801995 0.850647628 1.017258143 1.686284589 1 13.04346809 -7.55896723 24.71409768 1.346019835 0.97509051 0.323873519 0.214777981 174.2154782 119302.9367 0.139071916 0.052564622 2.76E-08 7.55896723 -0.370929325 RVVQHTK(ac)GCK ddPTM_HeLa_A486_30min_R1 1 RVVQHTKGCK 10 2 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 RVVQHTK(1)GCK 81.865 0.035512 6881300 16408 18488 14686 7290.8 19045 21878 22303 20238 17675 30145 FALSE TRUE FALSE 15257.88393 17022.94355 20372.8125 16973.35086 16656.19851 19178.9148 16722.5535 15630.24919 19207.08323 22596.49579 0.675232305 0.753344399 0.901591676 0.751149692 0.737114226 0.848756151 0.740050743 0.691711199 0.850002735 1 14.46381144 -8.03182246 8.192011561 0.999997254 0.767740211 0.565335613 0.064037064 0.334643529 84.62419869 0.062942651 0.016276133 9.29E-09 8.03182246 -0.232257043 RWDNDDMTDDIPESSLFS(ph)PMPSEEK ddPTM_HeLa_A485_30min_R1 1 RWDNDDMTDDIPESSLFSPMPSEEK 25 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 RWDNDDMTDDIPES(0.135)S(0.135)LFS(0.696)PMPS(0.033)EEK 57.147 0.016711 39802000 18426 21692 18671 23651 28462 21328 27771 26939 20090 32346 TRUE FALSE FALSE 22524.80013 24228.6907 25578.17987 24942.99424 25628.22334 22444.7011 21837.49898 20332.16801 24121.87872 24282.73748 0.927605471 0.997774272 1.053348284 1.027190376 1.055409151 0.924306871 0.899301366 0.837309551 0.993375592 1 14.56764345 -6.310449056 9.615648257 0.918595401 1.014545249 0.341820293 0.055140995 0.555710443 106.422102 0.01948919 0.017207981 4.89E-07 6.310449056 0.095949848 RWDQT(ph)ADQTPGAT(ph)PK ddPTM_HeLa_A486_30min_R1 1 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 RWDQT(0.5)ADQT(0.5)PGAT(1)PK 67.416 0.030756 108790000 227470 197360 114510 131280 191650 234480 321850 323960 170700 367680 TRUE FALSE FALSE 211525.5277 181720.4748 158851.3387 305626.4745 167611.4699 205552.2416 241319.7258 250201.38 185496.4134 275610.5348 0.767479835 0.659337913 0.576361636 1.108907084 0.608146093 0.745806911 0.875582372 0.907807752 0.673038183 1 18.07227151 -13.99999999 0.08454257 1.7104074 0.57172954 0.180677333 0.151159558 404.6064587 2.397397727 53.29351895 4.358377582 1.00E-14 13.99999999 -1.13867786 RWDQTADQT(ph)PGAT(ph)PK ddPTM_HeLa_A485_30min_R1 1 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 RWDQT(0.011)ADQT(0.989)PGAT(1)PK 113.29 2.26E-05 0 127680 119410 90934 188760 161500 131960 211230 208260 94895 231760 TRUE FALSE FALSE 156081.9755 133373.9608 124574.2707 199071.4808 145420.4929 138869.2216 166098.9849 157183.9085 113939.5561 173986.4972 0.897092464 0.766576504 0.715999647 1.144177761 0.83581482 0.798160913 0.954665951 0.903425904 0.654875855 1 17.40861582 RWDQTADQTPGAT(ph)PK ddPTM_HeLa_A485_30min_R1 6 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 RWDQT(0.001)ADQT(0.207)PGAT(0.792)PK;RWDQTADQT(0.001)PGAT(0.999)PK;RWDQTADQT(0.103)PGAT(0.897)PK;RWDQTADQT(0.11)PGAT(0.89)PK;RWDQTADQT(0.143)PGAT(0.857)PK;RWDQTADQTPGAT(1)PK ;;;;; 165.13 4.78E-12 5919510000 3804700 3859470 2991860 6229400 4994950 4306810 6755780 6878650 3517750 7896420 TRUE FALSE FALSE 4651042.389 4310801.444 4098673.516 6569696.348 4497635.24 4532307.912 5312352.413 5191650.302 4223730.158 5927987.817 0.78459041 0.72719472 0.691410584 1.10825065 0.758711957 0.764560936 0.89614766 0.875786264 0.712506552 1 22.49911105 -11.76047083 2.122893263 8.530381052 0.817045355 0.186337606 0.116835151 4760196.682 210636.791 174597716.5 0.029835963 1.74E-12 11.76047083 -7.713335697 RWDQTADQTPGAT(ph)PK ddPTM_HeLa_A486_30min_R1 6 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 RWDQTADQT(0.005)PGAT(0.995)PK;RWDQTADQT(0.01)PGAT(0.99)PK;RWDQTADQT(0.232)PGAT(0.768)PK;RWDQTADQT(0.002)PGAT(0.998)PK;RWDQTADQT(0.001)PGAT(0.999)PK;RWDQTADQT(0.015)PGAT(0.985)PK ;;;;; 137.86 5.26E-06 5932420000 4212660 3968820 2012890 2267020 3595940 4204710 5510790 5159630 3006860 6741240 TRUE FALSE FALSE 3917374.288 3654316.249 2792334.915 5277737.129 3144903.674 3685975.631 4131932.055 3984894.883 3267497.046 5053189.626 0.77522804 0.723170219 0.552588587 1.044436785 0.622360115 0.729435446 0.817687908 0.788590015 0.646620706 1 22.26876289 -10.99746295 2.812522698 1.249418943 0.746430075 0.268217966 0.126590714 53773840.54 14549609.36 86878396.7 0.030742722 1.01E-11 10.99746295 -0.502988868 RWEQELNAK ddPTM_HeLa_A485_30min_R1 1 RWEQELNAK 9 1 O43463;O43463-2 O43463 SUV39H1 Histone-lysine N-methyltransferase SUV39H1 0 0 73.26 0.017543 15221000 8157.8 9070.4 7534.2 9234.1 12034 10850 12409 17770 6594.5 12008 FALSE FALSE TRUE 9972.474466 10131.10438 10321.4141 9738.535501 10835.85271 11418.08922 9757.715778 13411.87964 7917.955662 9014.626591 1.106254859 1.123851806 1.144963022 1.080303815 1.202030123 1.266618102 1.082431499 1.487790925 0.878345385 1 13.13805202 -5.769293387 24.89803838 1.179424432 1.116781094 0 0.154187747 663.6147008 2103723.032 0.044439746 0.051314128 1.70E-06 5.769293387 -0.062643338 RWIS(ph)FK ddPTM_HeLa_A485_30min_R1 1 RWISFK 6 1 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 RWIS(1)FK 78.516 0.013249 138520000 97260 101790 79907 106760 140890 118910 179220 192950 99999 164200 TRUE FALSE FALSE 118895.1515 113693.455 109467.9245 112592.0285 126862.4969 125135.9437 140928.1829 145628.71 120067.8821 123267.9619 0.964525978 0.922327694 0.888048466 0.913392472 1.029160335 1.015153831 1.143266918 1.181399512 0.974039647 1 16.91143836 -6.022472016 1.841282462 1.083345933 0.918763164 0.517589565 0.063052851 0.256088061 1.747304372 0.02407169 0.026081937 9.50E-07 6.022472016 -0.164582769 RWIS(ph)FK ddPTM_HeLa_A486_30min_R1 1 RWISFK 6 1 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 RWIS(1)FK 82.426 0.014519 0 46270 50101 30925 31273 50275 65705 75507 87679 36967 77278 TRUE FALSE FALSE 43026.71194 46130.8143 42899.9882 72805.12445 43969.0407 57598.98514 56614.34997 67716.40572 40171.32932 57927.0858 0.742773632 0.796360004 0.74058599 1.256840793 0.759041131 0.994335971 0.977338134 1.168993827 0.69348093 1 15.82195047 RWLPAGDALLQMITIHLPSPVTAQK ddPTM_HeLa_A485_30min_R1 5 RWLPAGDALLQMITIHLPSPVTAQK 25 1 P13639 P13639 EEF2 Elongation factor 2 0 0 ;;;; ;;;; 287.48 8.37E-85 159788000 97832.1 122581.1 97188.3 87761.4 123235.6 110731.5 167868.8 192329.7 69373.3 144223.1 FALSE FALSE TRUE 119594.5131 136915.8933 133142.2965 92555.58306 110965.831 116529.2301 132002.2595 145160.5395 83295.88498 108270.9354 1.104585572 1.264567382 1.229714106 0.854851606 1.024890295 1.076274345 1.219184623 1.340715668 0.769328211 1 16.72428649 -1.000000081 0.045863182 0.774999879 1.670345094 0.067984124 0.16732005 2123.03216 7.39461264 36.21542312 139.2371042 0.099999981 1.000000081 0.895345216 RWLPAGDALLQMITIHLPSPVTAQK ddPTM_HeLa_A486_30min_R1 5 RWLPAGDALLQMITIHLPSPVTAQK 25 1 P13639 P13639 EEF2 Elongation factor 2 0 0 ;;;; ;;;; 248.7 1.03E-52 128117300 84185.5 88278.2 66037.5 36203.75 96309.7 78165 120659.7 106983.6 72707.2 114614.5 FALSE FALSE TRUE 78284.53118 81282.71393 91608.98855 84284.15964 84229.63937 68521.79702 90469.36685 82625.76972 79009.51864 85914.28318 0.911193439 0.946090812 1.06628357 0.981026164 0.980391575 0.797560015 1.053018934 0.961723321 0.919631937 1 16.39061038 -2.709935694 13.86607411 0.962133384 0.3848378 0 0.07278379 0 0 0.016593106 0 0.001950133 2.709935694 -0.577295583 RWQS(ph)PVTK ddPTM_HeLa_A485_30min_R1 6 RWQSPVTK 8 1 A9Z1X7;M0R088 A9Z1X7;M0R088 SRRM1 1 0 RWQS(0.997)PVT(0.003)K;RWQS(0.964)PVT(0.036)K;RWQS(0.995)PVT(0.005)K;RWQS(0.999)PVT(0.001)K;RWQS(0.995)PVT(0.005)K;RWQS(0.999)PVT(0.001)K ;;;;; 110.74 0.00070075 9005460000 6167530 7333130 6133530 6918520 8330540 7977550 10530000 11142400 6246580 9292900 TRUE FALSE FALSE 7539475.771 8190675.764 8402577.984 7296461.229 7501122.187 8395242.182 8280179.478 8409708.929 7500211.309 6976351.053 1.080719091 1.174063017 1.20443738 1.045885044 1.075221435 1.203385856 1.186892605 1.20545954 1.075090868 1 22.73404121 -8.002459616 6.657759338 1.000035019 1.14706834 0.4071798 0.056568885 0.116563165 31.35381211 0.057894559 0.015002101 9.94E-09 8.002459616 0.147033321 RWQS(ph)PVTK ddPTM_HeLa_A486_30min_R1 6 RWQSPVTK 8 1 A9Z1X7;M0R088 A9Z1X7;M0R088 SRRM1 1 0 RWQS(0.989)PVT(0.011)K;RWQS(0.999)PVT(0.001)K;RWQS(0.995)PVT(0.005)K;RWQS(0.895)PVT(0.105)K;RWQS(0.998)PVT(0.002)K;RWQS(0.997)PVT(0.003)K ;;;;; 101.79 0.001134 8774950000 7306910 7037490 4979120 3047200 7649050 7237410 8794520 8558480 5582750 9324740 TRUE FALSE FALSE 6794733.342 6479813.662 6907168.609 7094035.597 6689634.824 6344531.939 6594038.077 6609900.934 6066667.265 6989764.41 0.972097619 0.927043214 0.988183321 1.014917697 0.957061559 0.907688953 0.943384883 0.945654323 0.867935872 1 22.7368124 -6.007469503 24.21210051 0.930432318 0.974620709 0.226674727 0.037067483 341.1208159 1105737.234 0.01160969 0.012620592 9.83E-07 6.007469503 0.044188391 RWS(ph)GNEPTDEFSDLPLR ddPTM_HeLa_A485_30min_R1 1 RWSGNEPTDEFSDLPLR 17 1 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 RWS(0.997)GNEPT(0.003)DEFSDLPLR 135.54 4.08E-06 58182000 16798 18186 21592 20299 25279 15926 21713 20757 19140 32443 TRUE FALSE FALSE 20534.65715 20312.6945 29579.77932 21407.88297 22762.134 16759.86073 17073.84017 15666.3132 22981.22244 24355.55717 0.843119991 0.834006562 1.214498158 0.878973239 0.934576608 0.688132922 0.701024413 0.64323362 0.943572027 1 14.57196337 -6.189252678 7.358279944 0.76722893 0.947704617 0.188560593 0.145326693 0.396859065 35.68079197 0.047977343 0.047953511 6.47E-07 6.189252678 0.180475687 RWS(ph)GNEPTDEFSDLPLR ddPTM_HeLa_A486_30min_R1 1 RWSGNEPTDEFSDLPLR 17 1 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 RWS(0.997)GNEPT(0.003)DEFSDLPLR 84.181 0.0010886 48275000 70694 71406 61093 19428 76179 65142 62577 71253 67354 71661 TRUE FALSE FALSE 65738.71566 65747.5285 84749.84573 45229.36584 66623.91948 57105.44236 46919.57273 55030.24734 73192.29895 53716.61917 1.223805904 1.223969965 1.577721142 0.841999488 1.240285046 1.063087053 0.873464739 1.024454781 1.362563395 1 15.71308089 -5.265374545 24.99978973 1.05911897 1.330046094 0.363837339 0.171785494 381.8472105 2425850.21 0.047739079 0.0738717 5.43E-06 5.265374545 0.270927124 RWS(ph)WGGSAMANSESK ddPTM_HeLa_A485_30min_R1 3 RWSWGGSAMANSESK 15 1 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-4;Q8IWC1;Q8IWC1-3 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 RWS(0.993)WGGS(0.007)AMANSESK;RWS(0.813)WGGS(0.187)AMANSESK;RWS(1)WGGSAMANSESK ;; 174.91 8.59E-13 752600000 693800 731720 547690 712750 893040 812540 970550 1089890 731500 1066750 TRUE FALSE FALSE 848133.4164 817288.2889 750303.3223 751685.7277 804125.8019 855083.338 763184.0638 822592.7686 878305.3403 800828.8571 1.059069499 1.020552995 0.936908449 0.938634667 1.004116916 1.067747909 0.952992711 1.027176732 1.096745369 1 19.61113444 -6.003453901 24.98762032 1.027001248 0.985356866 0.129442591 0.048921802 315.4979511 2282531.547 0.016185819 0.017979034 9.92E-07 6.003453901 -0.041644382 RWS(ph)WGGSAMANSESK ddPTM_HeLa_A486_30min_R1 2 RWSWGGSAMANSESK 15 1 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-4;Q8IWC1;Q8IWC1-3 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 RWS(1)WGGSAMANSESK;RWS(0.99)WGGS(0.01)AMANSESK ; 198.14 1.86E-25 427068000 646220 674220 522150 282758 656840 652960 784970 801870 543620 770430 TRUE FALSE FALSE 600923.3151 620792.3517 724340.4637 658274.9138 574453.0024 572404.434 588562.2034 619301.7057 590741.4193 577509.3133 1.040543072 1.074947776 1.254248974 1.139851598 0.994707772 0.991160525 1.019138895 1.072366612 1.022912368 1 19.13948469 -5.756094141 24.99755684 1.019176224 1.132712237 0.483505533 0.055900388 123.7341435 578652.2344 0.018043112 0.022611283 1.75E-06 5.756094141 0.113536013 RY(ph)PGEVT(ph)IPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 RYPGEVTIPSPK 12 1 A0A3B3ISG9;A0A3B3ISP2;A0A3B3IS14;A0A3B3ITJ8;A0A3B3IS61;A0A3B3IRX5;A0A3B3ISW5;A0A3B3IRM3;A0A3B3IRT9;A0A3B3IS77;A0A3B3IS97;A0A3B3ITL3;A0A3B3ISN3;A0A3B3IRX0;A0A3B3IUE2;A0A3B3IU66;A0A3B3IRF0;A0A3B3ITS6;A0A3B3ISB6;A0A3B3ISI4;A0A3B3IS21;A0A2R8YF72;Q9UL68-4;Q9UL68 A0A3B3ISG9 MYT1L Myelin transcription factor 1-like protein 3 0 RY(1)PGEVT(1)IPS(1)PK;RY(1)PGEVT(1)IPS(1)PK ; 57.802 0.014159 700750000 146713 341550 496420 264814 396570 264760 251465 254430 364350 349686 TRUE FALSE FALSE 179348.8007 381491.3014 680066.4158 279280.1183 357086.0984 278622.4242 197737.4485 192030.6436 437471.703 262515.7157 0.683192624 1.453213193 2.590574107 1.063860567 1.360246557 1.061355216 0.753240422 0.731501514 1.666459099 1 18.00204427 -5.814558709 2.07292352 1.024767528 1.557093365 0.124163319 0.511890027 0.600523102 5.302877199 0.182087555 0.226789168 1.53E-06 5.814558709 0.532325838 RYDDPEVQK(ac)DIK ddPTM_HeLa_A485_30min_R1 1 RYDDPEVQKDIK 12 2 P38646;A0A3B3ITI4;D6RJI2 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 RYDDPEVQK(1)DIK 167.98 1.44E-05 19656000 25173 25242 18287 26900 26373 30923 36280 38555 23680 49395 FALSE TRUE FALSE 30772.647 28193.83232 25052.12229 28369.47889 23747.21152 32542.08046 28528.48162 29099.3258 28432.35879 37081.73555 0.829859945 0.760315878 0.675591957 0.765052619 0.640401836 0.87757706 0.769340518 0.784734732 0.76674833 1 15.17842115 -11.33709762 0.320777961 1.325833342 0.745416642 0.559556057 0.063390353 33.83955518 1.392177259 7.873672958 0.058554845 4.60E-12 11.33709762 -0.5804167 RYDDPEVQK(ac)DIK ddPTM_HeLa_A486_30min_R1 2 RYDDPEVQKDIK 12 2 P38646;A0A3B3ITI4;D6RJI2 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 ; RYDDPEVQK(1)DIK;RYDDPEVQK(1)DIK 138.87 0.0014983 33911000 30592 40838 27235 17215.9 46513 44863 55777 52296 38026 50366 FALSE TRUE FALSE 28447.65878 37601.84815 37781.12138 40079.48524 40678.90582 39328.25919 41821.00465 40389.34241 41322.1243 37754.02577 0.753500009 0.995969235 1.000717688 1.061595007 1.077472004 1.041697101 1.107723052 1.069802268 1.094509087 1 15.20434287 -3.635517434 1.065989094 1.068447217 6.29E-17 0.892202641 0.0317648 1.597711129 0.577974128 0.009310011 2.664899383 0.000231464 3.635517434 -1.068447217 RYEDDGIS(ph)DDEIEGK ddPTM_HeLa_A486_30min_R1 1 RYEDDGISDDEIEGK 15 1 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RYEDDGIS(1)DDEIEGK 220.28 8.75E-34 565640000 491760 461580 251820 213660 397760 546060 623890 568080 364180 686500 TRUE FALSE FALSE 457290.1635 425002.7198 349331.448 497411.2778 347869.2318 478692.6691 467786.1232 438740.5851 395747.4156 514595.9316 0.88863929 0.825895997 0.678846113 0.966605539 0.676004629 0.930230186 0.909035798 0.852592409 0.769044975 1 18.97308053 RYEDDGIS(ph)DDEIEGKR ddPTM_HeLa_A485_30min_R1 3 RYEDDGISDDEIEGKR 16 2 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RYEDDGIS(1)DDEIEGKR;RYEDDGIS(1)DDEIEGKR;RYEDDGIS(1)DDEIEGKR ;; 173.36 1.62E-12 2492800000 971000 1004780 792180 1309230 1471200 1163780 1720850 1659090 949830 1814680 TRUE FALSE FALSE 1186995.6 1122280.281 1085240.347 1380749.92 1324722.162 1224713.721 1353176.339 1252195.576 1140452.169 1362313.673 0.871308586 0.823804608 0.796615617 1.013533041 0.972406127 0.898995397 0.993292783 0.919168325 0.837143597 1 20.37762749 -5.250580132 24.99662437 0.945311686 0.8298991 0.506490166 0.052981085 618.6252626 1423995.204 0.014647175 0.02505253 5.62E-06 5.250580132 -0.115412586 RYEDDGIS(ph)DDEIEGKR ddPTM_HeLa_A486_30min_R1 1 RYEDDGISDDEIEGKR 16 2 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RYEDDGIS(1)DDEIEGKR 84.159 0.0014978 857630000 417580 438370 272700 184890 473870 478980 607450 625290 387330 616660 TRUE FALSE FALSE 388309.7984 403631.9647 378296.7432 430433.2638 414432.8059 419888.3175 455459.585 482925.117 420904.0763 462244.3222 0.840053149 0.873200481 0.818391325 0.931181289 0.896566569 0.908368794 0.985322184 1.044739965 0.910566244 1 18.81829607 -6.159190695 0.793604364 0.99278381 0.846257119 0.639450206 0.040735865 0.404530161 0.561205457 0.026313054 0.028163232 6.93E-07 6.159190695 -0.146526692 RYEPSDKDRQS(ph)PPPAK ddPTM_HeLa_A485_30min_R1 2 RYEPSDKDRQSPPPAK 16 3 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RYEPS(0.173)DKDRQS(0.827)PPPAK;RYEPS(0.068)DKDRQS(0.932)PPPAK ; 135.18 5.17E-05 1755010000 444020 293540 236391 611490 438720 365740 540730 410940 362150 843500 TRUE FALSE FALSE 542790.7171 327866.9495 323841.868 644894.1503 395039.4964 384889.5809 425198.6181 310156.3207 434830.1832 633230.9735 0.857176512 0.517768339 0.51141192 1.018418519 0.6238474 0.607818627 0.671474763 0.489799668 0.686684956 1 19.2723723 -8.044385862 23.02044131 1.000000002 0.656886618 0.29434534 0.155874392 5164.532727 2678547.801 0.150073249 0.038748746 9.03E-09 8.044385862 -0.343113384 RYEPSDKDRQS(ph)PPPAK ddPTM_HeLa_A486_30min_R1 3 RYEPSDKDRQSPPPAK 16 3 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 RYEPS(0.224)DKDRQS(0.776)PPPAK;RYEPS(0.013)DKDRQS(0.987)PPPAK;RYEPS(0.073)DKDRQS(0.927)PPPAK ;; 141.6 5.61E-07 2683080000 791350 782170 389957 396382 734030 913580 1042580 1015730 646700 1090270 TRUE FALSE FALSE 735880.4515 720188.0006 540958.7938 922797.328 641961.1128 800871.7882 781715.4567 784470.4522 702756.4767 817259.2955 0.900424695 0.881223382 0.66191819 1.129136534 0.785504816 0.979948215 0.956508492 0.95987951 0.859894137 1 19.64043436 -5.254575829 24.99738251 0.94560234 0.821192241 0.272003492 0.103137388 789.1191751 2874003.975 0.026920471 0.045366232 5.56E-06 5.254575829 -0.124410099 RYFGGTEDR ddPTM_HeLa_A485_30min_R1 1 RYFGGTEDR 9 1 Q16658 Q16658 FSCN1 Fascin 0 0 96.171 0.0062039 79841000 104480 147270 126390 101040 181320 151100 187670 202330 134860 154750 FALSE FALSE TRUE 127721.2155 164491.9454 173146.9205 106559.5594 163267.1441 159011.3624 147572.7714 152708.2503 161925.165 116173.673 1.099398963 1.415914133 1.490414447 0.917243612 1.405371286 1.368738358 1.270277229 1.314482416 1.393819795 1 16.82592364 -10.38683182 3.816401892 0.998634623 1.300277123 0.232601611 0.161918055 109782870.9 2564.609668 1323790.323 0.038198517 4.10E-11 10.38683182 0.301642501 RYFGGTEDR ddPTM_HeLa_A486_30min_R1 2 RYFGGTEDR 9 1 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 83.883 0.0019315 125430000 162328 184765 174653 55095 248270 171855 197796 216351 164280 192739 FALSE FALSE TRUE 150949.6455 170123.5485 242283.319 128263.9443 217129.6616 150653.2774 148305.3487 167092.6002 178519.9227 144475.8999 1.044808481 1.177521986 1.676980861 0.887787821 1.50287807 1.042757149 1.026505797 1.156543066 1.235638074 1 17.14046933 RYGLLANTEDPTEMAS(ph)LDS(ph)DEETVFESR ddPTM_HeLa_A486_30min_R1 1 RYGLLANTEDPTEMASLDSDEETVFESR 28 1 Q9BVV8 Q9BVV8 C19orf24 Uncharacterized membrane protein C19orf24 2 0 RY(0.001)GLLANT(0.003)EDPT(0.006)EMAS(0.975)LDS(0.844)DEET(0.09)VFES(0.081)R 44.674 0.024999 29495000 16406 14677 15874 7939.2 21310 18967 18192 17758 16911 25495 TRUE FALSE FALSE 15256.02412 13513.94107 22020.83792 18482.85882 18637.10109 16627.04438 13640.16918 13714.89105 18376.8591 19110.88606 0.798289733 0.707133151 1.152266716 0.967137723 0.975208634 0.87003001 0.713738188 0.717648099 0.96159116 1 14.22210705 -6.521683551 24.98501987 0.820024901 0.923594211 0.042001742 0.139146585 113.3840422 2370356.071 0.054745488 0.042993507 3.01E-07 6.521683551 0.10356931 RYGLLANTEDPTEMASLDS(ph)DEETVFESR ddPTM_HeLa_A485_30min_R1 1 RYGLLANTEDPTEMASLDSDEETVFESR 28 1 Q9BVV8 Q9BVV8 C19orf24 Uncharacterized membrane protein C19orf24 1 0 RYGLLANTEDPTEMAS(0.019)LDS(0.975)DEET(0.005)VFES(0.001)R 69.952 0.0045303 38152000 11866 11522 12987 12782 16527 12358 17560 18807 10745 19461 TRUE FALSE FALSE 14505.55076 12869.39767 17791.43173 13480.24829 14881.51385 13005.04577 13808.16255 14194.55376 12901.42294 14609.73085 0.99286913 0.880878491 1.217779568 0.922689708 1.018602875 0.890163269 0.945134629 0.971582153 0.883070542 1 13.83464198 -6.241742067 23.84532653 0.936660531 1.006655957 0.130725409 0.088381781 962.769686 1165517.05 0.028538671 0.028495036 5.73E-07 6.241742067 0.069995425 RYPS(ph)MAR ddPTM_HeLa_A485_30min_R1 1 RYPSMAR 7 1 A0A2R8Y4E6;O95263-2;O95263-3;O95263-6;O95263-4;O95263 A0A2R8Y4E6 PDE8B "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B" 1 0 RYPS(1)MAR 77.192 0.009387 0 58067 72450 70184 58575 81420 73903 79065 83856 65073 76626 TRUE FALSE FALSE 70983.80382 80922.39727 96147.9822 61774.80393 73313.53892 77772.4468 62172.11685 63290.18452 78132.55422 57524.5484 1.233974117 1.40674546 1.671425242 1.073885944 1.274473959 1.35198709 1.080792785 1.100229142 1.358247155 1 15.81189013 -5.280444446 24.98957701 1.188597135 1.434318034 0.382525279 0.151039158 859.9010954 1130673.786 0.042610229 0.063323156 5.24E-06 5.280444446 0.245720899 RYPS(ph)SIS(ph)SSPQK ddPTM_HeLa_A485_30min_R1 1 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RY(0.001)PS(0.644)S(0.473)IS(0.673)S(0.167)S(0.041)PQK 106.6 0.00025009 170670000 325710 250800 211330 448730 296980 236790 344010 267210 225810 482140 TRUE FALSE FALSE 398163.0658 280128.8783 289509.7612 473242.9837 267411.6284 249187.9583 270509.4532 201676.3285 271127.9957 361951.3711 1.100045745 0.773940647 0.79985817 1.307476698 0.738805403 0.688457009 0.747364079 0.557191779 0.74907299 1 18.46543636 -5.956315082 24.99965694 0.719892165 0.972753041 0.317833973 0.174696472 160.3692102 91774.09466 0.05339039 0.060538979 1.11E-06 5.956315082 0.252860876 RYPS(ph)SISSS(ph)PQK ddPTM_HeLa_A486_30min_R1 1 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.571)S(0.423)IS(0.006)S(0.423)S(0.577)PQK 102.36 0.00036484 634210000 626500 741280 404630 328990 548290 765750 826150 755500 570770 890920 TRUE FALSE FALSE 582585.5852 682538.2731 561313.5724 765905.3462 479518.3556 671279.5506 619438.5319 583489.1424 620244.8032 667827.8331 0.872358947 1.022027294 0.840506407 1.146860476 0.71802691 1.005168574 0.927542251 0.873711926 0.928749556 1 19.3491167 -3.889549477 10.35027363 0.935123247 5.36E-05 0.031211125 0.110205701 203051.2644 523390.507 0.025174567 4105297.975 0.000128959 3.889549477 -0.935069664 RYPS(ph)SISSS(ph)PQKDLTQAK ddPTM_HeLa_A485_30min_R1 2 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.551)S(0.447)IS(0.001)S(0.199)S(0.8)PQKDLTQAK;RY(0.002)PS(0.549)S(0.449)ISS(0.005)S(0.995)PQKDLTQAK ; 140.66 4.16E-07 5558330000 956370 787090 554780 1224840 1155440 1100890 1814530 1872760 747650 1631710 TRUE FALSE FALSE 1169111.207 879133.3287 760016.2083 1291749.908 1040400.337 1158530.898 1426840.842 1413462.674 897696.4971 1224954.726 0.954411769 0.717686384 0.620444325 1.054528694 0.849337787 0.945774463 1.164811084 1.153889726 0.732840551 1 20.224297 -5.273375625 24.98404953 0.992390003 0.759531377 0.330026208 0.144501829 820.6397368 1717699.468 0.041603644 0.062243008 5.33E-06 5.273375625 -0.232858626 RYPSS(ph)ISS(ph)SPQK ddPTM_HeLa_A485_30min_R1 1 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.025)S(0.901)IS(0.075)S(0.522)S(0.476)PQK 188 2.10E-13 1033100000 1949700 1491500 1162300 2550100 1652900 1474500 1978600 1514700 1265700 2755700 TRUE FALSE FALSE 2383404.039 1665917.951 1592283.137 2689405.506 1488331.472 1551702.54 1555855.946 1143217.45 1519714.38 2068754.705 1.152096009 0.805275728 0.769681941 1.300011789 0.719433517 0.750065987 0.752073671 0.552611408 0.734603468 1 20.98033116 -5.891182562 22.31122438 0.728970245 0.979755169 0.324976954 0.176782131 5.199368161 1043.31292 0.053978509 0.061205939 1.28E-06 5.891182562 0.250784924 RYPSS(ph)ISS(ph)SPQK ddPTM_HeLa_A486_30min_R1 2 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.146)S(0.853)IS(0.074)S(0.855)S(0.072)PQK;RYPS(0.004)S(0.938)IS(0.086)S(0.649)S(0.323)PQK ; 176.08 1.12E-10 384530000 1218880 1408180 803520 526600 1091840 1441060 1594230 1396290 1045370 1705280 TRUE FALSE FALSE 1133442.806 1296590.688 1114664.463 1225951.413 954891.2462 1263276.669 1195336.792 1078385.248 1135983.513 1278266.788 0.886702851 1.014334957 0.872012379 0.959073195 0.747020305 0.98827309 0.935123092 0.843630811 0.88869047 1 20.28575754 -4.792569511 24.9959444 0.899092523 0.950519241 0.052371502 0.076301946 482.7335426 387609.8749 0.019143054 0.039856182 1.61E-05 4.792569511 0.051426718 RYPSS(ph)ISS(ph)SPQKDLTQAK ddPTM_HeLa_A485_30min_R1 1 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.438)S(0.56)IS(0.096)S(0.754)S(0.151)PQKDLTQAK 193.54 7.92E-18 3444500000 2383900 2024400 1266400 2920000 2948200 2689100 4373800 4205300 1704200 4034800 TRUE FALSE FALSE 2914190.331 2261135.97 1734894.059 3079512.206 2654666.856 2829897.118 3439301.899 3173943.581 2046217.308 3028998.615 0.962096951 0.746496205 0.572761589 1.016676664 0.876417323 0.934268211 1.135458393 1.047852437 0.675542504 1 21.53040949 -5.288241639 24.90003104 0.960526799 0.759055981 0.276310245 0.144224394 882.386621 819759.3186 0.041297952 0.061274193 5.15E-06 5.288241639 -0.201470818 RYPSS(ph)ISSS(ph)PQK ddPTM_HeLa_A485_30min_R1 3 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.169)S(0.824)IS(0.008)S(0.022)S(0.976)PQK;RYPS(0.35)S(0.631)IS(0.019)S(0.018)S(0.983)PQK;RYPS(0.09)S(0.431)IS(0.239)S(0.269)S(0.972)PQK ;; 206.75 1.33E-17 1574580000 2700860 2058250 1686990 3621800 2509790 1945390 2896680 2169850 1786910 4083200 TRUE FALSE FALSE 3301656.989 2298944.433 2311077.803 3819649.763 2259906.495 2047247.612 2277780.654 1637690.885 2145526.446 3065333.386 1.077095563 0.74998186 0.753940114 1.246079719 0.73724656 0.66787111 0.743077626 0.534261915 0.699932496 1 21.54761256 -5.970480457 24.99741549 0.700993495 0.935533833 0.2784731 0.17434388 262.816883 222554.6113 0.05318421 0.060304428 1.07E-06 5.970480457 0.234540338 RYPSS(ph)ISSS(ph)PQK ddPTM_HeLa_A486_30min_R1 3 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.004)S(0.996)IS(0.028)S(0.053)S(0.919)PQK;RYPS(0.02)S(0.914)IS(0.066)S(0.014)S(0.986)PQK;RYPS(0.084)S(0.58)IS(0.336)S(0.025)S(0.975)PQK ;; 176.26 1.86E-11 2306290000 2435970 2785290 1407760 1017090 2019430 2670890 2870800 2650060 1960030 2918240 TRUE FALSE FALSE 2265221.082 2564573.477 1952882.373 2367836.921 1766134.259 2341382.747 2152495.476 2046699.188 2129926.979 2187493.709 1.035532616 1.172379818 0.892748795 1.082442848 0.807377983 1.070349477 0.984000761 0.935636605 0.973683704 1 21.06084744 -4.759552961 24.99999992 0.968518865 1.103956213 0.306124779 0.081705523 53.45465498 708359.4249 0.019548504 0.046620149 1.74E-05 4.759552961 0.135437349 RYPSS(ph)ISSS(ph)PQKDLTQAK ddPTM_HeLa_A485_30min_R1 2 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RY(0.017)PS(0.445)S(0.508)IS(0.059)S(0.346)S(0.62)PQKDLT(0.006)QAK;RY(0.001)PS(0.445)S(0.55)IS(0.004)S(0.035)S(0.965)PQKDLTQAK ; 145.13 3.22E-08 1319040000 254565 261826 212227.4 358931 358854 312906 420303 443068 245618 426677 TRUE FALSE FALSE 311192.106 292444.2731 290739.1468 378538.4917 323125.2357 329289.2743 330501.8305 334404.8783 294911.2797 320314.2763 0.971521187 0.912991692 0.9076684 1.181772152 1.00877563 1.028019351 1.031804871 1.043989928 0.920693523 1 18.28912857 RYPSS(ph)ISSS(ph)PQKDLTQAK ddPTM_HeLa_A486_30min_R1 5 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RY(0.004)PS(0.122)S(0.817)IS(0.07)S(0.349)S(0.403)PQKDLT(0.235)QAK;RY(0.008)PS(0.457)S(0.533)IS(0.016)S(0.321)S(0.66)PQKDLT(0.004)QAK;RYPS(0.2)S(0.8)ISS(0.005)S(0.995)PQKDLTQAK;RY(0.001)PS(0.442)S(0.558)IS(0.001)S(0.244)S(0.755)PQKDLTQAK;RY(0.001)PS(0.445)S(0.554)ISS(0.034)S(0.966)PQKDLTQAK ;;;; 210.66 7.25E-26 10987580000 4824570 4417030 2236290 2740350 4754250 4935070 7066560 6443730 3051860 6442660 TRUE FALSE FALSE 4486392.557 4067008.456 3102241.378 6379673.29 4157927.633 4326231.24 5298431.946 4976633.345 3316397.682 4829376.001 0.92897976 0.842139534 0.642368989 1.321013996 0.860965813 0.895815782 1.09712558 1.030492002 0.686713497 1 22.20340536 RYPSS(ph)ISSSPQK ddPTM_HeLa_A486_30min_R1 1 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPS(0.102)S(0.392)IS(0.025)S(0.241)S(0.241)PQK 183.06 1.85E-12 1107700000 2073500 2145000 1016400 727260 1575400 2354300 2378800 2198500 1625200 2649000 TRUE FALSE FALSE 1928158.358 1975022.388 1409977.3 1693098.034 1377798.642 2063850.403 1783599.08 1697949.543 1766073.645 1985673.158 0.971035112 0.994636192 0.710075218 0.852656958 0.693869803 1.039370651 0.898233968 0.855100214 0.889408026 1 20.92119674 -6.279335427 24.99808451 0.924979529 0.845788212 0.163270765 0.102451988 1946.413878 2718838.954 0.037788811 0.033395677 5.26E-07 6.279335427 -0.079191316 RYPSSIS(ph)S(ph)SPQK ddPTM_HeLa_A485_30min_R1 1 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.062)S(0.299)IS(0.659)S(0.55)S(0.43)PQK 85.554 0.0013388 134940000 175600 136340 109150 244060 165040 132000 193140 153000 120660 272560 TRUE FALSE FALSE 214661.6142 152283.777 149529.1271 257392.3798 148608.0381 138911.3159 151874.0612 115476.5101 144875.3552 204615.8081 1.049095943 0.744242483 0.730779936 1.25793008 0.726278382 0.678888485 0.742240116 0.564357716 0.708035985 1 17.64255808 -5.955776074 24.99983813 0.710683773 0.925336143 0.246371409 0.174273118 185.1120778 104643.2317 0.053299121 0.060435503 1.11E-06 5.955776074 0.214652371 RYPSSISS(ph)SPQK ddPTM_HeLa_A485_30min_R1 3 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSISS(0.956)S(0.044)PQK;RYPSSIS(0.023)S(0.489)S(0.489)PQK;RYPSSISS(0.5)S(0.5)PQK ;; 163.2 1.59E-10 20134600000 3838600 3433060 2869620 4913830 3806520 3497360 4487910 3456470 3408880 6591290 TRUE FALSE FALSE 4692483.327 3834526.503 3931211.853 5182260.09 3427529.503 3680476.362 3529031.366 2608765.313 4093010.948 4948202.707 0.948320755 0.774933189 0.794472677 1.047301495 0.692681708 0.743800644 0.713194583 0.527214722 0.827171236 1 22.23847317 -5.816591034 24.99999417 0.724819709 0.876037844 0.192533744 0.133494333 129.4063318 58658.38173 0.040043422 0.045405003 1.53E-06 5.816591034 0.151218135 RYPSSISS(ph)SPQK ddPTM_HeLa_A486_30min_R1 3 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSIS(0.001)S(0.5)S(0.5)PQK;RYPS(0.002)S(0.001)IS(0.09)S(0.453)S(0.453)PQK;RYPS(0.401)S(0.123)IS(0.004)S(0.433)S(0.04)PQK ;; 212.11 2.90E-17 5320030000 1432530 1447910 811160 509779 1228930 1484530 1567580 1585850 1172970 1891730 TRUE FALSE FALSE 1332117.045 1333172.338 1125262.876 1186791.275 1074786.14 1301383.782 1175354.904 1224786.574 1274643.984 1418028.495 0.939414863 0.940159061 0.793540383 0.836930484 0.757943965 0.91774163 0.828865505 0.863724938 0.898884605 1 20.43545509 -8.167812023 2.056961512 0.999875867 0.856669654 0.35550984 0.056985263 0.735534913 5.855472631 0.057025287 0.015796243 6.79E-09 8.167812023 -0.143206213 RYPSSISS(ph)SPQKDLTQAK ddPTM_HeLa_A485_30min_R1 1 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSIS(0.002)S(0.901)S(0.096)PQKDLTQAK 205.9 1.59E-25 286690000 201790 217200 144830 320320 293890 314900 457510 470500 237240 442620 TRUE FALSE FALSE 246677.4893 242599.6506 198408.6439 337818.2705 264629.2797 331387.6771 359759.251 355109.1373 284851.8919 332282.9798 0.742371726 0.73009954 0.597107453 1.016658364 0.796397335 0.997305602 1.082689373 1.068694934 0.857256944 1 18.34205287 -5.535457695 1.283636654 1.000550209 0.692813243 0.573128443 0.103652261 0.322446404 1.084498601 0.038339295 0.069780438 2.91E-06 5.535457695 -0.307736966 RYPSSISS(ph)SPQKDLTQAK ddPTM_HeLa_A486_30min_R1 1 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPS(0.002)S(0.001)IS(0.008)S(0.494)S(0.494)PQKDLTQAK 180.63 7.35E-18 309550000 257670 187550 107440 111120 227950 239290 343680 358020 162830 366970 TRUE FALSE FALSE 239608.6636 172687.855 149043.6453 258692.9757 199358.3855 209768.8327 257687.6289 276506.6615 176944.2355 275078.3234 0.871056144 0.627777037 0.541822574 0.940433883 0.72473317 0.762578563 0.936779117 1.005192478 0.643250378 1 18.06948293 -6.144442023 0.932142143 0.892623954 0.702280309 0.191417032 0.143098523 0.916037253 1.719494288 0.082018573 0.085027311 7.17E-07 6.144442023 -0.190343645 RYPSSISSS(ph)PQK ddPTM_HeLa_A485_30min_R1 3 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSISS(0.103)S(0.897)PQK;RYPSSIS(0.005)S(0.034)S(0.961)PQK;RYPSSISS(0.031)S(0.969)PQK ;; 132.81 1.33E-05 11271890000 3162540 2729220 2179720 3982060 3393520 2789180 3820600 3089470 2722040 5326860 TRUE FALSE FALSE 3866036.112 3048378.538 2986089.134 4199589.855 3055649.233 2935217.152 3004297.599 2331772.638 3268328.46 3998971.836 0.966757525 0.762290574 0.74671422 1.0501674 0.764108716 0.733992954 0.751267506 0.583093038 0.817292193 1 21.93119769 -5.965893766 24.99929103 0.749410834 0.868816914 0.122457121 0.128079221 333.5090483 244455.139 0.038699747 0.043881204 1.08E-06 5.965893766 0.119406081 RYPSSISSS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSIS(0.002)S(0.073)S(0.926)PQK;RYPSSIS(0.002)S(0.257)S(0.741)PQK ; 151.9 6.25E-08 15551700000 1568830 1523930 876410 541170 1272210 1560100 1704450 1674750 1259530 2071900 TRUE FALSE FALSE 1458863.118 1403168.237 1215779.423 1259871.109 1112637.559 1367630.724 1277978.582 1293445.985 1368707.075 1553082.754 0.939333796 0.903472937 0.782816897 0.811206683 0.716405842 0.880591018 0.822865735 0.832824897 0.88128406 1 20.56670327 -8.164524647 2.238214933 0.999929095 0.83261747 0.408396236 0.059404802 0.658861475 6.156312642 0.060286924 0.016526159 6.85E-09 8.164524647 -0.167311626 RYPSSISSS(ph)PQKDLTQAK ddPTM_HeLa_A485_30min_R1 3 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSISS(0.032)S(0.968)PQKDLTQAK;RYPSSISS(0.04)S(0.96)PQKDLTQAK;RYPS(0.016)S(0.016)IS(0.016)S(0.152)S(0.799)PQKDLTQAK ;; 258.2 4.09E-58 43552900000 3944190 3558580 2524990 4969670 5184750 4826780 7822780 8542110 3785550 7103640 TRUE FALSE FALSE 4821561.458 3974724.975 3459088.875 5241150.488 4668538.085 5079502.737 6151379.147 6447144.129 4545275.162 5332833.281 0.904127544 0.745330815 0.64863998 0.982807864 0.875432971 0.952496069 1.153491741 1.208952875 0.852319006 1 22.3464708 -5.965508352 1.230528634 1.062479074 0.779272364 0.434959362 0.120938264 0.400427646 1.27119477 0.054048048 0.063786165 1.08E-06 5.965508352 -0.28320671 RYPSSISSS(ph)PQKDLTQAK ddPTM_HeLa_A486_30min_R1 3 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSISS(0.04)S(0.96)PQKDLTQAK;RYPS(0.045)S(0.045)IS(0.143)S(0.115)S(0.651)PQKDLTQAK;RYPSSISS(0.005)S(0.995)PQKDLTQAK ;; 273.56 2.33E-69 30320400000 6477400 4998260 2388670 2870210 5600250 6001720 8404300 7973100 4036800 8819300 TRUE FALSE FALSE 6023367.709 4602179.674 3313626.995 6681993.932 4897814.425 5261288.807 6301455.248 6157799.182 4386713.074 6610889.876 0.911128127 0.696151314 0.501237663 1.010755595 0.740870672 0.79585183 0.953193196 0.93146298 0.663558637 1 22.65641305 -5.273352636 24.9972675 0.862852383 0.702170247 0.230146224 0.140254725 1128.262798 2367400.79 0.039185942 0.058642351 5.33E-06 5.273352636 -0.160682135 RYPT(ph)PYPDELK ddPTM_HeLa_A485_30min_R1 1 RYPTPYPDELK 11 1 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7 Q96RT1-6 ERBB2IP Protein LAP2 1 0 RY(0.011)PT(0.986)PY(0.003)PDELK 66.387 0.014948 201330000 316650 307220 232760 344560 293690 299090 376510 338400 311640 689790 TRUE FALSE FALSE 387087.7001 343146.7065 318867.61 363382.4403 264449.1924 314749.8899 296065.5627 255406.8694 374183.2895 517838.0476 0.74750726 0.662652557 0.615767056 0.701729898 0.51067934 0.607815303 0.571733893 0.493217659 0.722587479 1 18.98214144 -8.017807967 22.67488416 1.000000003 0.613109093 0.712717925 0.074151113 183.1111013 233156.1136 0.073789669 0.019052411 9.60E-09 8.017807967 -0.386890911 RYQVVATMRDLGK(ac)K ddPTM_HeLa_A485_30min_R1 1 RYQVVATMRDLGKK 14 3 K7ELF7;Q9NYR8 K7ELF7 RDH8 Retinol dehydrogenase 8 0 1 RYQVVATMRDLGK(1)K 48.44 0.032504 9200100 12556 6667.4 13001 31199 18028 9740 11390 8258.9 15617 45245 FALSE TRUE FALSE 15349.03888 7447.094431 17810.61092 32903.32237 16233.06902 10249.97134 8956.433452 6233.391826 18751.18865 33966.25417 0.451890833 0.2192498 0.52436194 0.96870624 0.477917551 0.301769259 0.263686228 0.183517199 0.552053475 1 15.0518145 -8.023654885 23.4280704 1.000000012 0.427017453 0.398422301 0.212352576 1044.006889 1033996.741 0.226670974 0.058526194 9.47E-09 8.023654885 -0.572982559 RYS(ph)DFEWLK ddPTM_HeLa_A485_30min_R1 4 RYSDFEWLK 9 1 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RYS(1)DFEWLK;RYS(1)DFEWLK;RYS(1)DFEWLK;RYS(1)DFEWLK ;;; 203.39 4.27E-10 1777080000 3820380 3234670 2735530 4550670 3977480 3340930 4316530 3805450 3245400 5458560 TRUE FALSE FALSE 4670210.351 3612936.519 3747516.382 4799261.579 3581468.125 3515855.929 3394268.103 2872157.421 3896722.011 4097841.449 1.139675707 0.881668206 0.914509853 1.171168196 0.873988945 0.857977541 0.828306352 0.700895205 0.950920639 1 21.96643274 -5.970657297 24.87941317 0.848637021 1.010150172 0.315187979 0.111381897 232.5500748 197176.0748 0.034011207 0.038564569 1.07E-06 5.970657297 0.161513152 RYS(ph)DFEWLK ddPTM_HeLa_A486_30min_R1 5 RYSDFEWLK 9 1 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RYS(1)DFEWLK;RYS(1)DFEWLK;RYS(1)DFEWLK;RYS(1)DFEWLK;RYS(1)DFEWLK ;;;; 220.37 2.86E-12 1971300000 3952750 4589690 2838952 1582436 3831251 4588645 4833704 4554105 3650991 5202087 TRUE FALSE FALSE 3675682.637 4225986.249 3938270.244 3683990.98 3350699.775 4022544.634 3624260.133 3517234.707 3967461.84 3899450.555 0.942615526 1.083738898 1.009955169 0.944746171 0.859274846 1.031567032 0.929428411 0.901982127 1.017441248 1 21.89483943 -5.222883607 5.732532046 0.948942801 1.020163693 0.156408276 0.059062338 0.298308614 27.29467267 0.015688228 0.027020253 5.99E-06 5.222883607 0.071220892 RYS(ph)DFEWLKNELER ddPTM_HeLa_A485_30min_R1 3 RYSDFEWLKNELER 14 2 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RYS(1)DFEWLKNELER;RYS(1)DFEWLKNELER;RYS(1)DFEWLKNELER ;; 191.8 3.60E-18 103880000 75779 81077 88852 108193 207357 139853 211384 257191 106886 179752 TRUE FALSE FALSE 92635.77712 90558.24987 121722.0522 114103.3096 186711.809 147175.4868 166220.0816 194114.504 128337.0398 134943.1345 0.686480105 0.671084529 0.902024788 0.845565875 1.383633259 1.090648201 1.231778721 1.438491145 0.951045344 1 17.04199205 -5.635566672 5.682316017 1.201302429 0.765439385 0.623338471 0.155223703 0.130994283 6.029000943 0.045303085 0.058706214 2.31E-06 5.635566672 -0.435863044 RYS(ph)DFEWLKNELER ddPTM_HeLa_A486_30min_R1 2 RYSDFEWLKNELER 14 2 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RYS(1)DFEWLKNELER;RYS(1)DFEWLKNELER ; 229.48 1.57E-28 201953000 101526 115700 119780 103495 257310 166880 253820 272210 115629 171505 TRUE FALSE FALSE 94409.55168 106531.5106 166162.0238 240941.5903 225035.7805 146292.0423 190311.5514 210233.7253 125651.8148 128559.0317 0.734367321 0.828658315 1.292495919 1.874170855 1.750447071 1.137936716 1.48034369 1.635308874 0.977386133 1 16.97207144 -4.798334011 3.791339189 1.448995541 0.760357456 0.41811081 0.288632006 0.186224765 5.57308802 0.076825848 0.193661302 1.59E-05 4.798334011 -0.688638086 RYS(ph)DFEWLR ddPTM_HeLa_A485_30min_R1 6 RYSDFEWLR 9 1 O60493-3;O60493-4;O60493 O60493-3 SNX3 Sorting nexin-3 1 0 RY(0.002)S(0.998)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR ;;;;; 237.53 4.77E-16 2424356000 385421 433612 459754 394536 591173 413223 503573 522688 461572 533693 TRUE FALSE FALSE 471156.5718 484319.1515 629836.1366 416088.5027 532313.7404 434858.7173 395980.5147 394497.9485 554205.2666 400653.157 1.175971195 1.208823999 1.572023396 1.038525456 1.328614866 1.085374493 0.988337438 0.984637065 1.383254461 1 18.61199432 -6.275967161 22.55999804 1.081111486 1.266180524 0.219118963 0.166281149 343.1326126 532842.412 0.05761158 0.051111303 5.30E-07 6.275967161 0.185069037 RYS(ph)DFEWLR ddPTM_HeLa_A486_30min_R1 5 RYSDFEWLR 9 1 O60493-3;O60493-4;O60493 O60493-3 SNX3 Sorting nexin-3 1 0 RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR;RYS(1)DFEWLR ;;;; 235.21 5.52E-16 2559880000 311881 405141 358014 126522.8 452627 347219 385742 397261 320246 327872 TRUE FALSE FALSE 290019.7525 373036.1517 496646.6087 294551.4725 395854.3011 304382.65 289225.2716 306813.3424 348005.1811 245770.7171 1.180041934 1.517821798 2.020772102 1.198480746 1.610665037 1.238482166 1.176809325 1.248372247 1.415974959 1 17.90695351 -6.276604736 21.21373975 1.229005862 1.517801044 0.268058893 0.238378015 159.8542199 223605.9887 0.083806698 0.074373114 5.29E-07 6.276604736 0.288795182 RYS(ph)DLTTLVAFPSSSVYPTK ddPTM_HeLa_A486_30min_R1 1 RYSDLTTLVAFPSSSVYPTK 20 1 J3KQ69;A0A499FHX9;P25205;P25205-2 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 RY(0.087)S(0.443)DLT(0.192)T(0.278)LVAFPSSSVYPTK 102.69 6.35E-05 383590000 544050 535950 298870 121630 295090 471110 409780 357040 445200 618660 TRUE FALSE FALSE 505914.9045 493479.3701 414600.468 283160.7868 258077.0606 412989.2381 307248.7098 275749.7861 483790.2945 463743.5092 1.090936896 1.064121352 0.894029695 0.610597844 0.556508189 0.890555296 0.662540184 0.594617026 1.043228174 1 18.82296756 -4.929091474 3.385778575 0.740742508 1.078427945 0.362725175 0.161695445 0.224765874 5.167902622 0.042853077 0.099137152 1.18E-05 4.929091474 0.337685436 RYS(ph)DLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYK ddPTM_HeLa_A485_30min_R1 1 RYSDLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYK 37 2 J3KQ69;A0A499FHX9;P25205;P25205-2 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 RY(0.413)S(0.475)DLT(0.097)T(0.015)LVAFPSSSVYPTKDEENNPLETEYGLSVYK 160.4 1.15E-14 400460000 127150 86847 77928 166350 145190 130910 192710 164850 102680 252480 TRUE FALSE FALSE 155434.0788 97003.00118 106756.8101 175437.2793 130734.3738 137764.2452 151535.9342 124420.279 123286.9342 189541.3826 0.820053525 0.511777428 0.563237477 0.925588264 0.689740531 0.726829378 0.799487332 0.656428044 0.650448638 1 17.53215334 -10.98702187 2.697725286 1.273932007 0.703054715 0.368475449 0.115900371 19666019.98 6630423.368 33510622.02 0.02930156 1.03E-11 10.98702187 -0.570877292 RYS(ph)FRVPEEER ddPTM_HeLa_A485_30min_R1 4 RYSFRVPEEER 11 2 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6;Q5VT25-4;H0Y6R0;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25;Q5VT25-2 H0Y7V8;A0A0A0MRJ1 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 0 RY(0.001)S(0.999)FRVPEEER;RYS(1)FRVPEEER;RYS(1)FRVPEEER;RYS(1)FRVPEEER ;;; 150.05 4.66E-07 1024590000 336022 481655 540683 344997 699889 520838 609315 706875 559068 517121 TRUE FALSE FALSE 410768.9346 537980.3624 740704.1414 363843.3125 630205.5937 548108.2723 479129.8726 533512.7979 671267.8195 388212.2516 1.058103996 1.385789243 1.907987546 0.937227795 1.623353181 1.411877832 1.234195651 1.374281197 1.729125798 1 18.56648612 -5.280738668 24.97986128 1.357245582 1.444143363 0.027297498 0.299857762 4707.996134 6093743.73 0.083050364 0.123383919 5.24E-06 5.280738668 0.086897781 RYS(ph)FRVPEEER ddPTM_HeLa_A486_30min_R1 2 RYSFRVPEEER 11 2 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6;Q5VT25-4;H0Y6R0;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25;Q5VT25-2 H0Y7V8;A0A0A0MRJ1 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 0 RYS(1)FRVPEEER;RYS(1)FRVPEEER ; 145.43 6.57E-07 680690000 283230 360600 327150 125999 433010 316380 384520 425240 298540 305640 TRUE FALSE FALSE 263377.0396 332024.7427 453831.2414 293332.0396 378697.8481 277348.2523 288309.029 328422.1349 324417.6876 229105.7546 1.149587185 1.449220441 1.980881022 1.280334665 1.652939049 1.210568686 1.258410246 1.433495791 1.416017193 1 17.80565417 -6.270921007 24.86577476 1.290461361 1.513851292 0.19913267 0.235978545 1161.740005 3046679.54 0.08296192 0.074128276 5.36E-07 6.270921007 0.223389931 RYS(ph)GDSDSSASSAQSGPLGTR ddPTM_HeLa_A486_30min_R1 1 RYSGDSDSSASSAQSGPLGTR 21 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 RYS(0.984)GDS(0.016)DSSASSAQSGPLGTR 155.8 3.31E-10 406130000 99178 140600 95053 37965 144540 99906 95636 119720 98657 88090 TRUE FALSE FALSE 92226.13436 129458.3439 131860.0672 88384.43864 126410.4454 87580.61349 71706.86127 92462.36947 107208.6682 66031.69063 1.396695033 1.960548681 1.996920962 1.338515458 1.914390563 1.326342134 1.085946166 1.400272636 1.623594174 1 16.01087096 -6.316753541 8.862576467 1.298775107 1.728545014 0.411162425 0.259559304 0.446222506 68.38537039 0.09104993 0.080354341 4.82E-07 6.316753541 0.429769907 RYS(ph)GNMEYVISR ddPTM_HeLa_A485_30min_R1 3 RYSGNMEYVISR 12 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 RYS(1)GNMEYVISR;RYS(1)GNMEYVISR;RYS(1)GNMEYVISR ;; 207.53 1.51E-17 1309450000 386620 483870 476510 371220 597740 463550 552450 582720 464200 503980 TRUE FALSE FALSE 472622.2852 540454.3874 652790.8782 391498.8086 538226.9068 487820.7612 434414.5444 439807.0063 557360.6821 378347.0611 1.249176573 1.428461968 1.72537584 1.034761067 1.422574568 1.289347299 1.148190614 1.1624433 1.473146588 1 18.52935071 -5.271133667 24.98129526 1.233914431 1.463750522 0.287584897 0.17845653 896.7620177 2310873.358 0.049179897 0.074024144 5.36E-06 5.271133667 0.229836091 RYS(ph)GNMEYVISR ddPTM_HeLa_A486_30min_R1 4 RYSGNMEYVISR 12 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 RYS(1)GNMEYVISR;RYS(1)GNMEYVISR;RYS(1)GNMEYVISR;RYS(1)GNMEYVISR ;;; 240.53 5.16E-28 1561850000 522977 623340 530482 181022 683020 526374 587200 620490 473480 492753 TRUE FALSE FALSE 486319.013 573944.2682 735898.8372 421428.3643 597349.2627 461435.3277 440276.3492 479217.9722 514521.6276 369364.4415 1.316637332 1.553869847 1.992338066 1.140955428 1.617235433 1.249268408 1.19198358 1.297412307 1.392991771 1 18.49468546 -6.083463481 1.212165367 1.233223144 1.569232597 0.280942393 0.228517702 0.631001027 1.927826478 0.105700086 0.111873906 8.25E-07 6.083463481 0.336009453 RYS(ph)PDELR ddPTM_HeLa_A485_30min_R1 3 RYSPDELR 8 1 S5FZ81;Q8WUB8-2;Q8WUB8;Q8WUB8-3 S5FZ81 PHF10 PHD finger protein 10 1 0 RYS(1)PDELR;RYS(1)PDELR;RYS(1)PDELR ;; 115.29 0.00057999 1365070000 264639 389383 408956 298797 477174 361727 400654 508735 337167 356658 TRUE FALSE FALSE 323507.0326 434917.9547 560245.8425 315119.5235 429664.8811 380666.4664 315050.9999 383966.9436 404833.3242 267749.7244 1.208244129 1.624345107 2.092423601 1.176918199 1.604725764 1.421724961 1.176662275 1.434051686 1.511984093 1 18.03052556 -6.12592647 1.206525927 1.31499228 1.591031543 0.153320735 0.272336503 0.934754852 2.820938014 0.130748356 0.133135088 7.48E-07 6.12592647 0.276039263 RYS(ph)PDELR ddPTM_HeLa_A486_30min_R1 3 RYSPDELR 8 1 S5FZ81;Q8WUB8-2;Q8WUB8;Q8WUB8-3 S5FZ81 PHF10 PHD finger protein 10 1 0 RYS(1)PDELR;RYS(1)PDELR;RYS(1)PDELR ;; 135.16 0.00028681 1391260000 382040 440850 382413 136527 503220 389691 424620 430400 370319 445480 TRUE FALSE FALSE 355260.9689 405915.4405 530493.555 317841.7557 440101.4553 341614.8865 318375.5848 332407.3156 402418.5491 333928.9084 1.063882042 1.215574424 1.588642198 0.951824618 1.317949552 1.02301681 0.953423249 0.995443363 1.20510246 1 18.34918147 -6.27661949 23.78553084 1.029988984 1.231647759 0.247339574 0.167411503 616.8473679 966526.6484 0.058633135 0.051937109 5.29E-07 6.27661949 0.201658774 RYS(ph)PPIQR ddPTM_HeLa_A485_30min_R1 13 RYSPPIQR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RY(0.002)S(0.998)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR ;;;;;;;;;;;; 161.19 2.40E-05 1.91E+11 1350053 1913690 1908192 1347938 2184677 1846955 2089801 2319134 1742504 1916296 TRUE FALSE FALSE 1650367.632 2137479.399 2614111.627 1421572.44 1967162.887 1943658.708 1643297.944 1750362.75 2092208.57 1438598.674 1.147205028 1.485806596 1.817123618 0.988164709 1.36741603 1.351077784 1.14229074 1.216713724 1.454337897 1 20.45623275 -5.274106444 24.96960758 1.234895889 1.483621264 0.254935075 0.207021219 1078.679521 2126315.116 0.057815158 0.086409528 5.32E-06 5.274106444 0.248725375 RYS(ph)PPIQR ddPTM_HeLa_A486_30min_R1 10 RYSPPIQR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RY(0.002)S(0.998)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RYS(1)PPIQR;RY(0.012)S(0.988)PPIQR;RYS(1)PPIQR ;;;;;;;;; 130.01 0.00032492 1.75E+11 1585640 1721223 1503552 526601 1963843 1521146 1704732 1748110 1414119 1649039 TRUE FALSE FALSE 1474494.824 1584827.021 2085767.601 1225953.741 1717519.499 1333482.472 1278190.023 1350103.514 1536695.974 1236108.901 1.192851878 1.282109545 1.687365571 0.991784575 1.389456461 1.078774266 1.034043216 1.092220526 1.243171999 1 20.23737442 -5.980099224 1.305078317 1.093125697 1.342565047 0.253166589 0.17695471 0.613767516 2.173591003 0.075089975 0.086616623 1.05E-06 5.980099224 0.24943935 RYS(ph)PS(ph)PPPK ddPTM_HeLa_A485_30min_R1 11 RYSPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RY(0.078)S(0.93)PS(0.992)PPPK;RY(0.15)S(0.85)PS(1)PPPK;RY(0.177)S(0.823)PS(1)PPPK;RY(0.002)S(0.998)PS(1)PPPK;RY(0.167)S(0.834)PS(0.999)PPPK;RY(0.063)S(0.943)PS(0.995)PPPK;RY(0.177)S(0.824)PS(0.999)PPPK;RY(0.044)S(0.984)PS(0.972)PPPK;RY(0.123)S(0.963)PS(0.913)PPPK;RY(0.126)S(0.874)PS(1)PPPK;RY(0.056)S(0.944)PS(0.999)PPPK ;;;;;;;;;; 109.16 0.00046193 49322970000 11266430 12036580 10436260 13986980 14528180 12807870 16428420 14641340 11715780 17735780 TRUE FALSE FALSE 13772608.48 13444153.33 14297066.86 14751053.3 13081703.39 13478470.27 12918353.86 11050528.41 14067029.58 13314576.45 1.034400797 1.009731956 1.073790587 1.107887536 0.982509916 1.012309353 0.970241442 0.829957186 1.056513486 1 23.6665032 -6.337241601 1.655503477 0.95267355 1.050735082 0.265310612 0.06134157 0.450435947 2.450482314 0.026980553 0.023201062 4.60E-07 6.337241601 0.098061532 RYS(ph)PS(ph)PPPK ddPTM_HeLa_A486_30min_R1 10 RYSPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RY(0.178)S(0.822)PS(1)PPPK;RY(0.176)S(0.826)PS(0.999)PPPK;RY(0.182)S(0.824)PS(0.994)PPPK;RYS(1)PS(1)PPPK;RY(0.034)S(0.967)PS(0.999)PPPK;RY(0.238)S(0.764)PS(0.998)PPPK;RY(0.177)S(0.823)PS(1)PPPK;RY(0.178)S(0.823)PS(0.999)PPPK;RY(0.015)S(0.985)PS(1)PPPK;RY(0.142)S(0.879)PS(0.979)PPPK ;;;;;;;;; 120.03 0.00021681 59944310000 7805710 8328380 5429170 3069310 8082590 8127340 9148840 9168210 6528570 9621040 TRUE FALSE FALSE 7258570.038 7668408.837 7531490.022 7145508.794 7068796.195 7124671.424 6859703.465 7080808.724 7094471.704 7211868.962 1.006475586 1.063303962 1.044318756 0.990798479 0.980161486 0.987909162 0.951168622 0.981827147 0.98372166 1 22.78194175 -5.340365832 3.941655367 0.97929702 1.040763641 0.682793776 0.017456804 0.120251847 3.541020723 0.004949514 0.007718472 4.57E-06 5.340365832 0.06146662 RYS(ph)PS(ph)PPPKR ddPTM_HeLa_A485_30min_R1 2 RYSPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RY(0.203)S(0.811)PS(0.986)PPPKR;RY(0.025)S(0.975)PS(1)PPPKR ; 74.133 0.007339 446800000 237254 244526 210504 278001 302497 295713 365670 362870 252288 376600 TRUE FALSE FALSE 290030.3338 273121.1886 288378.1894 293187.4907 272379.3365 311196.0754 287541.6173 273875.5635 302919.8875 282720.5508 1.025855153 0.966046465 1.020011416 1.037022211 0.963422488 1.100719684 1.017052409 0.968714735 1.071446298 1 18.10901723 -4.95922533 24.97497999 1.022387576 0.995220277 0.060124436 0.041753778 418.0084699 256031.1967 0.010553298 0.021968398 1.10E-05 4.95922533 -0.027167298 RYS(ph)PS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 2 RYSPSPPPKR 10 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RY(0.005)S(0.996)PS(0.999)PPPKR;RY(0.169)S(0.842)PS(0.989)PPPKR ; 70.373 0.0088814 3141300000 987540 941290 603010 438110 1011350 991970 1203480 1168130 832530 1298390 TRUE FALSE FALSE 918318.5457 866698.7523 836511.6212 1019942.221 884497.0525 869590.827 902356.5749 902172.2991 904694.3707 973264.6929 0.943544498 0.890506723 0.85949036 1.047959747 0.908793938 0.893478242 0.927144056 0.926954718 0.92954607 1 19.89247269 -8.682031818 1.505821662 1.000020541 0.923909988 0.18513422 0.047126844 11.28117146 22.93845823 0.045895282 0.01318146 2.08E-09 8.682031818 -0.076110554 RYS(ph)PS(ph)PPPKRR ddPTM_HeLa_A485_30min_R1 2 RYSPSPPPKRR 11 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RY(0.219)S(0.784)PS(0.997)PPPKRR;RY(0.237)S(0.763)PS(1)PPPKRR ; 58.071 0.019831 877830000 166982 468640 340309 88359 589075 632560 767370 1336540 331753 179061 TRUE FALSE FALSE 204126.5698 523443.3714 466203.4605 93185.82843 530424.6246 665679.8635 603415.1307 1008751.469 398332.7841 134424.3881 1.518523333 3.893961348 3.468146422 0.693221147 3.945895773 4.952076576 4.488881365 7.504229581 2.963247888 1 17.03643538 -5.986384225 24.78930863 4.589799613 2.545173355 0.171032667 1.769816614 312.4499318 568852.4448 0.529701522 0.600324524 1.03E-06 5.986384225 -2.044626258 RYS(ph)PS(ph)PPPKRR ddPTM_HeLa_A486_30min_R1 1 RYSPSPPPKRR 11 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RY(0.121)S(0.879)PS(1)PPPKRR 45.014 0.036897 169690000 42240 30594 30093 20777 65505 40841 55255 76432 27828 39873 TRUE FALSE FALSE 39279.19413 28169.62002 41745.81552 48369.90601 57288.75209 35802.45266 41429.61457 59030.1021 30240.15345 29888.54127 1.314189066 0.942488955 1.396716392 1.618342815 1.91674634 1.197865508 1.386137055 1.975007799 1.011764113 1 14.86730487 -4.931427173 6.712893314 1.492654386 1.132104525 0.114324286 0.327093629 0.357797357 27.85980539 0.082426614 0.173786067 1.17E-05 4.931427173 -0.360549861 RYS(ph)PSPPPK ddPTM_HeLa_A485_30min_R1 3 RYSPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RY(0.005)S(0.993)PS(0.002)PPPK;RY(0.06)S(0.92)PS(0.02)PPPK;RY(0.02)S(0.837)PS(0.143)PPPK ;; 75.739 0.0065013 1056170000 1002240 1313400 1121230 1237550 1438900 1385590 1753780 1906730 1236190 1667510 TRUE FALSE FALSE 1225184.83 1466990.705 1536019.635 1305154.223 1295638.064 1458137.35 1379070.576 1439101.478 1484281.994 1251830.445 0.978714677 1.171876519 1.227018915 1.042596645 1.03499485 1.164804192 1.101643263 1.149597762 1.185689324 1 20.25560774 RYS(ph)PSPPPK ddPTM_HeLa_A486_30min_R1 4 RYSPSPPPK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RY(0.007)S(0.971)PS(0.022)PPPK;RY(0.021)S(0.972)PS(0.007)PPPK;RY(0.018)S(0.952)PS(0.03)PPPK;RY(0.051)S(0.934)PS(0.015)PPPK ;;; 70.488 0.0085747 1595260000 1753400 1903810 1423190 774300 2035270 1994620 2212440 2202740 1625820 2238350 TRUE FALSE FALSE 1630495.715 1752945.162 1974287.282 1802609.531 1779987.458 1748544.064 1658864.111 1701224.187 1766747.387 1677852.591 0.971775306 1.044755166 1.176675051 1.074355126 1.060872372 1.042132112 0.988682868 1.01392947 1.052981291 1 20.67818454 -6.392360572 2.78264265 1.015130775 1.071808216 0.189407206 0.049305645 0.477657075 7.159287477 0.020530365 0.017550131 4.05E-07 6.392360572 0.056677441 RYS(ph)SSGTPSSASPALSR ddPTM_HeLa_A485_30min_R1 2 RYSSSGTPSSASPALSR 17 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RY(0.111)S(0.559)S(0.158)S(0.158)GT(0.015)PSSASPALSR;RYS(0.918)S(0.041)S(0.041)GTPSSASPALSR ; 136.64 3.33E-06 232580000 107702 113998 113523 100719 157608 120161 162439 141994 117422 139231 TRUE FALSE FALSE 131659.9383 127329.0744 155519.8818 106221.0239 141915.9941 126452.4442 127732.5806 107169.7489 140987.5183 104523.2741 1.259623175 1.21818873 1.487897152 1.016242793 1.357745396 1.209801791 1.222049173 1.025319479 1.348862439 1 16.6734647 -14 0.122299446 0.220845584 1.346051237 0.228404895 0.135101029 216.4887752 1.703444847 41.47741845 1.169911449 1.00E-14 14 1.125205653 RYS(ph)SSGTPSSASPALSR ddPTM_HeLa_A486_30min_R1 1 RYSSSGTPSSASPALSR 17 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RYS(0.85)S(0.057)S(0.093)GT(0.001)PSSASPALSR 141.19 2.15E-07 198690000 83074 71051 59157 22227 101530 71789 84118 90979 67149 90932 TRUE FALSE FALSE 77250.94159 65420.66 82064.17468 51745.57929 88795.16067 62932.40308 63070.78669 70265.06776 72969.52939 68162.03533 1.133342648 0.959781492 1.203957222 0.759155431 1.302707002 0.923276466 0.925306681 1.030853428 1.070530377 1 16.05668079 RYSPPIQR ddPTM_HeLa_A485_30min_R1 4 RYSPPIQR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 0 0 ;;; ;;; 107.57 0.00090716 512900000 344204 457631 445254 368668 515221 445554 545310 590300 412419 499587 FALSE FALSE TRUE 420770.9923 511146.9646 609971.9832 388807.3993 463923.7882 468882.5185 428800.0637 445527.9994 495187.7104 375049.1551 1.121908919 1.362879926 1.626378769 1.036683843 1.23696796 1.250189507 1.14331697 1.187918952 1.320327492 1 18.51672017 -5.285301714 24.99899306 1.181025328 1.369638389 0.288131068 0.1448184 1020.519755 1069128.781 0.040544182 0.060175746 5.18E-06 5.285301714 0.188613061 RYSPPIQR ddPTM_HeLa_A486_30min_R1 4 RYSPPIQR 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 0 0 ;;; ;;; 108.3 0.0010929 666710000 387664 428410 350390 146663 449650 405987 460600 465150 348712 462850 FALSE FALSE TRUE 360490.7555 394461.2314 486070.3918 341438.8759 393250.7042 355900.4517 345353.0083 359245.4992 378938.6369 346949.3474 1.039029928 1.136941846 1.400983733 0.98411736 1.133452785 1.025799456 0.995398928 1.035440769 1.092201613 1 18.40436553 RYSSS(ph)GTPSSASPALSR ddPTM_HeLa_A486_30min_R1 1 RYSSSGTPSSASPALSR 17 1 Q14934-2;Q14934-11;Q14934-9;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-10;Q14934-14;Q14934-15;Q14934-16;Q14934-17;Q14934-12;Q14934-13;Q14934-18 Q14934-2 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RYS(0.098)S(0.098)S(0.793)GT(0.004)PS(0.004)S(0.004)ASPALSR 212.21 2.87E-25 194100000 94969 85722 62906 31155 99769 94312 112210 107750 75403 109020 TRUE FALSE FALSE 88312.16352 78929.07653 87264.88788 72530.41449 87255.04171 82676.74433 84133.87116 83217.67717 81938.99275 81720.6824 1.080658665 0.965839665 1.067843358 0.88754049 1.067722872 1.011699143 1.029529719 1.018318432 1.002671421 1 16.31841363 RYVQFLSGLLSGSVK ddPTM_HeLa_A486_30min_R1 2 RYVQFLSGLLSGSVK 15 1 Q68CZ2;E9PCX8;Q68CZ2-2;C9JHU5;Q68CZ2-3;Q68CZ2-4 Q68CZ2 TNS3 Tensin-3 0 0 ; ; 103.79 0.0010475 21683100 43716 33164 27701 21857 45169 35347 52349 46123 26860 46340 FALSE FALSE TRUE 40651.73415 30535.96386 38427.56906 50884.20059 39503.48284 30986.24652 39250.72651 35621.79976 29188.24643 34736.16238 1.170300096 0.879082828 1.106269848 1.464876863 1.137243729 0.892045764 1.129967268 1.02549612 0.840284143 1 15.08415075 -6.161780123 7.945479498 0.988956489 1.152273153 0.248167456 0.150905261 0.519372377 37.07328427 0.053665585 0.053702984 6.89E-07 6.161780123 0.163316664 RYWEEETVPTTAGAS(ph)PGPPR ddPTM_HeLa_A485_30min_R1 2 RYWEEETVPTTAGASPGPPR 20 1 O15213 O15213 WDR46 WD repeat-containing protein 46 1 0 RYWEEETVPTTAGAS(1)PGPPR;RYWEEETVPTTAGAS(1)PGPPR ; 208.11 8.73E-27 936670000 298120 447580 409260 292610 521170 390950 423080 585300 383790 478310 TRUE FALSE FALSE 364435.7655 499920.5876 560662.3047 308594.5434 469280.4849 411419.5375 332685.5018 441754.2573 460813.1327 359076.1196 1.014926211 1.392241255 1.561402371 0.859412605 1.306910873 1.145772484 0.926504113 1.230252398 1.283329933 1 18.45393018 -5.25672101 24.99974069 1.119416131 1.329795052 0.215388286 0.18728651 646.3288077 3424487.23 0.051138989 0.085018345 5.54E-06 5.25672101 0.210378921 RYWEEETVPTTAGAS(ph)PGPPR ddPTM_HeLa_A486_30min_R1 3 RYWEEETVPTTAGASPGPPR 20 1 O15213 O15213 WDR46 WD repeat-containing protein 46 1 0 RYWEEETVPTTAGAS(1)PGPPR;RYWEEETVPTTAGAS(1)PGPPR;RYWEEETVPT(0.001)T(0.021)AGAS(0.978)PGPPR ;; 197.36 2.15E-26 1044490000 424711 495695 490887 199945 584100 441718 497744 519619 436512 581650 TRUE FALSE FALSE 394940.9521 456414.3229 680971.5928 465482.0647 510836.7315 387223.3242 373203.1866 401313.0969 474349.2116 436001.0541 0.905825682 1.046819311 1.561857675 1.067616833 1.171641047 0.888124743 0.855968542 0.920440658 1.087954277 1 18.7339721 -6.254477597 24.32679567 0.939617114 1.163198652 0.258547504 0.168400556 520.7988307 1819845.22 0.058538419 0.05728819 5.57E-07 6.254477597 0.223581539 S(ph)AAEELDEEIPVSSHYFASK ddPTM_HeLa_A485_30min_R1 1 SAAEELDEEIPVSSHYFASK 20 0 H0YNU5;P54132;A0A3B3IT82 H0YNU5 BLM Bloom syndrome protein 1 0 S(1)AAEELDEEIPVSSHYFASK 133.41 2.45E-07 48166000 28580 35480 26075 24050 50545 34002 44999 49444 34350 48397 TRUE FALSE FALSE 34937.5224 39629.07737 35721.22757 25363.7906 45512.56233 35782.29214 35384.59604 37317.78147 41243.72992 36332.51858 0.961604749 1.09073301 0.9831751 0.698101634 1.25266742 0.984855813 0.973909804 1.027117935 1.135173986 1 15.14897376 -5.780178439 24.9999989 1.055352811 0.948196337 0.210639263 0.120430862 479.7202446 639997.6354 0.038192563 0.043379877 1.66E-06 5.780178439 -0.107156475 S(ph)AAEELDEEIPVSSHYFASK ddPTM_HeLa_A486_30min_R1 1 SAAEELDEEIPVSSHYFASK 20 0 H0YNU5;P54132;A0A3B3IT82 H0YNU5 BLM Bloom syndrome protein 1 0 S(1)AAEELDEEIPVSSHYFASK 147.08 1.35E-09 35892000 48896 51699 36143 7778 59420 49101 44044 49784 40642 38281 TRUE FALSE FALSE 45468.6429 47602.18296 50138.53754 18107.57708 51966.98953 43043.41784 33023.72535 38449.26998 44164.88128 28695.18843 1.58453892 1.65889076 1.747280303 0.631031823 1.811000114 1.500022136 1.150845391 1.339920456 1.539104069 1 14.80852123 -1.000000048 0.03642133 4.56E-08 3.59969491 0.158930127 0.322529139 1880.645999 5.241619856 149.9248554 438.2817696 0.099999989 1.000000048 3.599694864 S(ph)AASQTADGSGCR ddPTM_HeLa_A485_30min_R1 1 SAASQTADGSGCR 13 0 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 S(0.917)AAS(0.08)QT(0.004)ADGSGCR 70.68 0.010635 288650000 111440 152150 161770 131540 212630 149110 163730 179090 163660 169310 TRUE FALSE FALSE 136229.4435 169942.619 221615.4548 138725.6971 191459.8106 156917.169 128747.7479 135167.8967 196505.0608 127104.1329 1.071793972 1.337034564 1.743573948 1.091433409 1.506322463 1.234555993 1.012931248 1.063442184 1.546016296 1 16.95565142 -6.514870705 24.28262731 1.155578464 1.358169785 0.137520004 0.230125045 522.8010515 1585292.298 0.084310845 0.068488019 3.06E-07 6.514870705 0.202591321 S(ph)AASQTADGSGCR ddPTM_HeLa_A486_30min_R1 1 SAASQTADGSGCR 13 0 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 S(1)AASQTADGSGCR 72.891 0.0093749 263820000 145490 150750 154780 44394 208170 152810 138530 176150 146020 117990 TRUE FALSE FALSE 135291.9023 138804.021 214714.9612 103351.4755 182059.3775 133957.8559 103868.3288 136044.4903 158677.1312 88444.53601 1.529680729 1.569390572 2.427679208 1.168545624 2.058458167 1.514597305 1.174389436 1.538189881 1.794086309 1 16.4324854 -6.508261648 24.24648314 1.410512376 1.749996716 0.185862417 0.368964778 849.7024971 1409471.364 0.129014631 0.109633433 3.10E-07 6.508261648 0.339484341 S(ph)ADSVMAEQVALSR ddPTM_HeLa_A485_30min_R1 1 SADSVMAEQVALSR 14 0 P11413-3 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 1 0 S(1)ADSVMAEQVALSR 163.8 6.89E-12 48093000 8413.1 8229.5 8890.7 10170 13329 8379.3 12007 11845 8884.5 12311 TRUE FALSE FALSE 10284.56507 9191.868438 12179.7399 10725.56135 12001.91796 8818.027191 9441.606362 8939.995178 10667.53766 9242.094267 1.11279595 0.994565536 1.317854974 1.160512005 1.298614536 0.954115695 1.021587325 0.967312702 1.154233808 1 13.17400409 -6.275929263 24.97372092 1.017540538 1.173664535 0.387260093 0.098950731 895.1443625 1542802.013 0.035389917 0.031356744 5.30E-07 6.275929263 0.156123997 S(ph)ADSVMAEQVALSR ddPTM_HeLa_A486_30min_R1 2 SADSVMAEQVALSR 14 0 P11413-3 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 1 0 S(1)ADSVMAEQVALSR;S(0.985)ADS(0.015)VMAEQVALSR ; 197.17 1.04E-21 82284000 24893 29993 23610 9167.9 30108 27885 32824 27230 19091.2 30330 TRUE FALSE FALSE 23148.12925 27616.24545 32752.4243 21343.33452 26331.57389 24444.83221 24611.08802 21030.32343 20746.04059 22735.17058 1.018163869 1.214692687 1.44060605 0.938780487 1.158186775 1.07519898 1.082511694 0.925012784 0.912508684 1 14.47263821 -6.635312844 0.831039146 0.936589363 1.185135352 0.320483121 0.126754893 0.738198732 1.030621174 0.099160223 0.065556231 2.32E-07 6.635312844 0.248545989 S(ph)AEALGPGALVSPR ddPTM_HeLa_A485_30min_R1 1 SAEALGPGALVSPR 14 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(1)AEALGPGALVSPR 104.94 0.00037657 46650000 121580 144330 152190 154200 190360 133460 168230 133600 154900 190390 TRUE FALSE FALSE 148625.0516 161208.138 208491.4142 162623.5555 171407.09 140447.7592 132286.2862 100834.3905 185987.0092 142929.2769 1.039850301 1.127887453 1.458703344 1.137790375 1.199244086 0.982638143 0.925536665 0.705484508 1.301252013 1 17.12494194 -6.282977881 4.3634914 0.958073812 1.202314979 0.271787686 0.169217758 0.259500926 12.3226513 0.059792943 0.054703604 5.21E-07 6.282977881 0.244241167 S(ph)AEDELAMR ddPTM_HeLa_A485_30min_R1 3 SAEDELAMR 9 0 A3KFL1;A3KFL5;A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL1 EXOSC2 Exosome complex component RRP4 1 0 S(1)AEDELAMR;S(1)AEDELAMR;S(1)AEDELAMR ;; 152.04 6.05E-05 863340000 359857 316295 272819 450170 413089 358723 511737 497370 344166 525247 TRUE FALSE FALSE 439905.9482 353282.9488 373746.101 474761.6472 371960.4087 377505.1816 402400.2094 375389.2277 413236.9593 394312.5894 1.115627449 0.89594641 0.947842172 1.204023559 0.943313551 0.957375422 1.020510682 0.952009238 1.047993319 1 18.58898025 S(ph)AEDELAMR ddPTM_HeLa_A486_30min_R1 3 SAEDELAMR 9 0 A3KFL1;A3KFL5;A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL1 EXOSC2 Exosome complex component RRP4 1 0 S(1)AEDELAMR;S(1)AEDELAMR;S(1)AEDELAMR ;; 167.09 8.71E-06 1081140000 469360 560050 359508 224865 529080 610240 674080 629960 416350 649180 TRUE FALSE FALSE 436460.2878 515669.5983 498719.1256 523497.084 462717.8529 534954.7933 505418.0543 486531.8599 452439.5532 486621.1025 0.896920182 1.059694279 1.024861279 1.07577966 0.950879135 1.099325102 1.03862749 0.999816608 0.929757363 1 18.89243936 -7.54161848 7.872035596 0.964505809 1.024580921 0.125266568 0.058168733 0.331185219 99.91486299 0.036856603 0.014237842 2.87E-08 7.54161848 0.060075112 S(ph)AEDSFLSPIISQSR ddPTM_HeLa_A486_30min_R1 1 SAEDSFLSPIISQSR 15 0 Q8IWY7;Q6IQ55-2;Q6IQ55 Q8IWY7 TTBK2 Tau-tubulin kinase 2 1 0 S(0.991)AEDS(0.009)FLSPIISQSR 86.497 0.0014198 9266700 14732 18654 12658 8659.1 20040 16436 24067 21970 14213 18924 TRUE FALSE FALSE 13699.36288 17175.7891 17559.51659 20158.82241 17526.39633 14408.29343 18045.18205 16967.9106 15444.99428 14185.30723 0.965743121 1.210815447 1.237866499 1.421105802 1.235531671 1.015719519 1.272103717 1.196160952 1.08880224 1 13.79210978 S(ph)AEEGELAESK ddPTM_HeLa_A485_30min_R1 2 SAEEGELAESK 11 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)AEEGELAESK;S(1)AEEGELAESK ; 245.15 5.11E-22 2054440000 1236140 747420 611350 2134400 1194090 802240 1520840 1062200 957070 2659000 TRUE FALSE FALSE 1511115.078 834824.2673 837513.8054 2250996.867 1075202.207 844244.0459 1195900.11 801693.7845 1149145.17 1996160.235 0.757010911 0.418215057 0.419562413 1.127663415 0.53863522 0.422934006 0.599100257 0.401617951 0.575677819 1 20.9287961 -10.42333206 2.854161704 1.009494541 0.579675863 0.259937353 0.21018902 26509080.95 30127211.15 2034781.521 0.054773508 3.77E-11 10.42333206 -0.429818678 S(ph)AEEGELAESK ddPTM_HeLa_A486_30min_R1 2 SAEEGELAESK 11 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)AEEGELAESK;S(1)AEEGELAESK ; 220.53 7.44E-18 2178000000 662760 740130 336470 324350 610320 892680 1128200 936770 556260 1014800 TRUE FALSE FALSE 616303.9465 681479.4033 466760.195 755103.1917 533767.9746 782550.2177 845912.4271 723487.9205 604477.0647 760687.4748 0.810193367 0.895873044 0.613603103 0.9926589 0.701691552 1.028740769 1.11203675 0.951097454 0.794645744 1 19.53694432 -6.274047669 24.77873497 0.982668528 0.808010828 0.341231332 0.121006644 824.1988732 1619771.293 0.042110147 0.037395374 5.32E-07 6.274047669 -0.1746577 S(ph)AEGSTVPLTR ddPTM_HeLa_A485_30min_R1 2 SAEGSTVPLTR 11 0 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 S(0.498)AEGS(0.498)T(0.003)VPLTR;S(0.497)AEGS(0.497)T(0.006)VPLTR ; 92.611 0.0024319 139892000 17307.7 26190 26935 20717.5 29140 33563 27957 33144 23846 22021 TRUE FALSE FALSE 21157.73815 29252.69268 36899.37736 21849.24457 26238.71928 35320.30678 21983.75856 25015.38203 28631.67347 16531.56997 1.279838406 1.769504816 2.232055239 1.321667852 1.587188593 2.136536751 1.329804647 1.513188529 1.731939164 1 14.01293612 -10.57865941 0.364611711 0.507959643 1.703750794 0.282927417 0.31150526 34.983013 2.499497921 15.83716839 0.236104881 2.64E-11 10.57865941 1.195791152 S(ph)AEGSTVPLTR ddPTM_HeLa_A486_30min_R1 1 SAEGSTVPLTR 11 0 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 S(0.498)AEGS(0.498)T(0.004)VPLTR 91.701 0.0025595 40839000 13410 13880 10476 7348.7 19173 16211 19794 18166 13279 20857 TRUE FALSE FALSE 12470.02825 12780.09825 14532.58776 17108.14498 16768.14356 14211.05164 14841.33184 14029.99836 14430.03441 15634.27144 0.797608529 0.817441241 0.929534057 1.094271968 1.072524781 0.908967949 0.94928196 0.89738741 0.922974535 1 13.93242437 -4.818728725 3.810337904 0.975754718 0.803465504 0.53895399 0.062051056 0.180667597 5.251630986 0.018683309 0.045813649 1.52E-05 4.818728725 -0.172289214 S(ph)AEKEISLWFKPEELVDYK ddPTM_HeLa_A486_30min_R1 1 SAEKEISLWFKPEELVDYK 19 2 Q32Q12;P22392-2;P22392 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 1 0 S(1)AEKEISLWFKPEELVDYK 209.16 3.20E-26 47572000 59667 53776 16571 57497 45318 76005 113090 111690 37443 126690 TRUE FALSE FALSE 55484.65142 49514.59391 22987.73499 133855.9217 39633.79387 66628.27586 84793.68586 86260.62518 40688.58939 94965.99939 0.584258069 0.521392859 0.242062792 1.409514169 0.417347199 0.701601376 0.892884679 0.908331674 0.428454285 1 16.53512346 S(ph)AEPAEALVLACK ddPTM_HeLa_A485_30min_R1 1 SAEPAEALVLACK 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 S(1)AEPAEALVLACK 106.32 0.00037164 0 21114 19090 17129 30225 28930 27871 31932 36893 22234 34970 TRUE FALSE FALSE 25810.73646 21322.40944 23465.7299 31876.11522 26049.62762 29330.28246 25109.46734 27844.9339 26696.15986 26252.62258 0.983167925 0.812201119 0.893843266 1.21420689 0.992267631 1.117232474 0.95645558 1.060653419 1.01689497 1 14.68017393 -5.053211463 24.98671982 1.050299773 0.886518819 0.445939901 0.078827221 250.3233715 117544.968 0.020159542 0.034917697 8.85E-06 5.053211463 -0.163780954 S(ph)AEPS(ph)PTVMSTSLGSNLSELDR ddPTM_HeLa_A485_30min_R1 1 SAEPSPTVMSTSLGSNLSELDR 22 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 2 0 S(0.931)AEPS(0.561)PT(0.506)VMS(0.001)T(0.001)S(0.001)LGSNLSELDR 64.203 0.012906 9761000 13801 15211 16423 16284 20922 16447 24416 22321 12865 21911 TRUE FALSE FALSE 16870.98484 16989.79413 22498.55112 17173.55369 18838.93222 17308.13949 19199.32214 16846.73975 15446.8875 16448.99094 1.025654698 1.032877591 1.367776978 1.044049069 1.145294096 1.052231079 1.167203642 1.024180742 0.93907812 1 14.00571146 -7.459764799 4.526428821 0.971533532 1.12062228 0.290614232 0.096508591 0.268711463 10.89794078 0.059084958 0.025563743 3.47E-08 7.459764799 0.149088749 S(ph)AEPSPTVMSTSLGSNLSELDR ddPTM_HeLa_A485_30min_R1 1 SAEPSPTVMSTSLGSNLSELDR 22 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 S(0.937)AEPS(0.026)PT(0.037)VMSTSLGSNLSELDR 94.281 0.0012045 50822000 2865.5 3421 3599.7 4206.4 3794.2 4167.3 7267.1 5742.9 3580.9 5666.7 TRUE FALSE FALSE 3502.920589 3821.056191 4931.378826 4436.184981 3416.436126 4385.493384 5714.424718 4334.44477 4299.553784 4254.095978 0.823423027 0.89820639 1.159207233 1.042803219 0.803093335 1.030887269 1.343275927 1.018887395 1.010685656 1 12.05463687 -6.523315981 24.9999912 1.10797124 0.955719843 0.211200698 0.133237468 25.29496007 1446100.448 0.052694616 0.041216516 3.00E-07 6.523315981 -0.152251397 S(ph)AEPSPTVMSTSLGSNLSELDR ddPTM_HeLa_A486_30min_R1 3 SAEPSPTVMSTSLGSNLSELDR 22 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 S(0.993)AEPS(0.007)PTVMSTSLGSNLSELDR;S(0.947)AEPS(0.046)PT(0.006)VMSTSLGSNLSELDR;S(0.985)AEPS(0.015)PTVMSTSLGSNLSELDR ;; 76.118 0.0051467 132322000 28770.6 29057.7 25936.2 15298 36736.2 34962.6 47097 35401.4 33766.7 49469 TRUE FALSE FALSE 26753.92951 26755.06203 35979.39124 35614.51712 32128.40324 30649.26989 35312.83246 27341.27403 36693.62474 37081.64041 0.721487216 0.721517757 0.97027507 0.960435318 0.866423462 0.826534898 0.95229963 0.737326443 0.989536178 1 15.17841745 -4.747528507 24.94806112 0.901839737 0.721502332 0.481751247 0.078726685 196.381244 352188.2778 0.019483076 0.050979149 1.79E-05 4.747528507 -0.180337405 S(ph)AGEEEDGPVLTDEQK ddPTM_HeLa_A485_30min_R1 6 SAGEEEDGPVLTDEQK 16 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F5GYV5;F8WCT1;F5H7X4;Q66PJ3-7;Q66PJ3-2;Q66PJ3 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK ;;;;; 459.27 2.07E-215 6123931000 2499781 1993043 1417884 4205510 3010030 2642436 4519400 4156770 2024048 5152360 TRUE FALSE FALSE 3055848.659 2226112.042 1942418.295 4435246.362 2710340.844 2780789.863 3553793.27 3137315.64 2430255.868 3867971.474 0.790039089 0.575524421 0.502180098 1.146659533 0.700713762 0.71892719 0.918774426 0.811101028 0.628302428 1 21.88314572 -13.99999998 0.031956372 2.127893141 6.87E-10 0.136061638 0.175172891 2723.657771 6.528711126 348.9938809 133.1703486 1.00E-14 13.99999998 -2.127893141 S(ph)AGEEEDGPVLTDEQK ddPTM_HeLa_A486_30min_R1 4 SAGEEEDGPVLTDEQK 16 0 H7BZV4;A0A0C4DG62;Q66PJ3-4;Q66PJ3-3;F5GYV5;F8WCT1;F5H7X4;Q66PJ3-7;Q66PJ3-2;Q66PJ3 H7BZV4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK ;;; 450.94 5.22E-193 3667533000 2641000 2521440 1219567 1366602 2418400 3171140 4212550 3767270 1921640 4606150 TRUE FALSE FALSE 2455879.538 2321631.911 1691816.004 3181518.52 2115061.721 2779916.989 3158525.434 2909544.86 2088209.302 3452740.059 0.711284225 0.67240275 0.489992289 0.921447449 0.612574849 0.805133587 0.914788076 0.842677065 0.604797716 1 21.71931029 -5.829627731 1.001472964 0.827510532 0.647261295 0.217363276 0.138531075 0.88381326 1.909687141 0.064932531 0.093269657 1.48E-06 5.829627731 -0.180249238 S(ph)AGLPVPK ddPTM_HeLa_A485_30min_R1 1 SAGLPVPK 8 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 S(1)AGLPVPK 84.213 0.005958 81312000 234640 194190 141660 260120 252800 187280 276540 282590 189390 333850 TRUE FALSE FALSE 286834.8585 216898.8313 194065.929 274329.6969 227630.3444 197085.6912 217454.9699 213284.3594 227398.8358 250627.3391 1.144467557 0.865423669 0.774320669 1.094572116 0.908242274 0.786369484 0.867642655 0.851001971 0.907318558 1 17.93518427 -5.996776428 24.99282631 0.869458568 0.954931915 0.111893203 0.110352833 225.0999118 1745203.995 0.034308822 0.03871203 1.01E-06 5.996776428 0.085473347 S(ph)AGLPVPK ddPTM_HeLa_A486_30min_R1 1 SAGLPVPK 8 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 S(1)AGLPVPK 72.643 0.014789 69451000 186130 229490 129500 86195 187570 231880 278290 240960 174630 263000 TRUE FALSE FALSE 173083.2482 211304.3766 179645.8681 200666.3161 164043.2216 203273.0032 208658.8985 186098.6681 189767.069 197143.0882 0.877957476 1.071832538 0.911246089 1.017871425 0.832102323 1.031093735 1.058413463 0.943977645 0.962585454 1 17.5888836 S(ph)AGSMCITQFMK ddPTM_HeLa_A485_30min_R1 1 SAGSMCITQFMK 12 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(0.999)AGS(0.001)MCITQFMK 103.76 0.00066286 0 57451 63531 49986 88096 78286 65729 81464 89353 55879 89417 TRUE FALSE FALSE 70230.77675 70960.3978 68477.90149 92908.46141 70491.57096 69170.4688 64058.5509 67439.03665 67093.40275 67126.9875 1.046237577 1.057106843 1.020124752 1.384070176 1.050122664 1.030442023 0.954289076 1.004648639 0.999499683 1 16.03460528 -5.992422313 24.9997966 1.000341116 1.127127631 0.287085324 0.095896524 255.8854254 844192.6326 0.031057345 0.035148251 1.02E-06 5.992422313 0.126786514 S(ph)AILVPSEK ddPTM_HeLa_A485_30min_R1 4 SAILVPSEK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.999)AILVPS(0.001)EK;S(1)AILVPSEK;S(0.985)AILVPS(0.015)EK;S(0.996)AILVPS(0.004)EK ;;; 155.11 4.24E-05 1114310000 2399620 1943800 1486830 2473670 2731590 2261220 3133350 2958240 1672540 3385570 TRUE FALSE FALSE 2933407.19 2171110.501 2036870.289 2608800.328 2459623.308 2379613.983 2463884.175 2232727.002 2008203.437 2541609.706 1.154153285 0.854226554 0.801409549 1.026436247 0.967742334 0.936262549 0.969418778 0.878469655 0.790130535 1 21.27731107 -7.273825513 20.79948015 0.875724932 0.950577882 0.08065761 0.101175571 207.39766 348257.3393 0.053966848 0.02637557 5.32E-08 7.273825513 0.074852949 S(ph)AILVPSEK ddPTM_HeLa_A486_30min_R1 4 SAILVPSEK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.997)AILVPS(0.003)EK;S(1)AILVPSEK;S(0.935)AILVPS(0.065)EK;S(0.999)AILVPS(0.001)EK ;;; 148.19 8.30E-05 1356200000 2142360 2194270 1229520 999950 2123860 2269300 2789090 2662380 1847210 3128940 TRUE FALSE FALSE 1992191.627 2020388.054 1705623.072 2327934.135 1857465.675 1989336.839 2091230.182 2056214.193 2007327.65 2345433.058 0.849391809 0.861413651 0.727210297 0.99253915 0.791949985 0.84817464 0.891617936 0.876688502 0.855845211 1 21.16142289 -14 0.201463807 1.667782017 0.832058162 0.329961352 0.063448122 163.0542653 1.615358482 43.76516561 0.143911197 1.00E-14 14 -0.835723856 S(ph)ALAFLNR ddPTM_HeLa_A485_30min_R1 2 SALAFLNR 8 0 Q9H0H5;F8VRD2;F8W1E5;F8VQF5;F8VYH6;F8VQZ5;F8VWX0;F8W1T4;F8W0L1;F8VZ66;F8VV37;F8VV47;F8VWY4;F8VVE5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 S(1)ALAFLNR;S(1)ALAFLNR ; 133.13 0.0001798 0 19925.7 24629.5 18510.8 15683.2 21090.3 17971.2 22123.6 25262.8 16431.8 21975.1 TRUE FALSE FALSE 24358.10322 27509.70578 25358.71522 16539.9335 18990.47568 18912.14424 17396.71213 19067.05869 19729.51154 16497.11199 1.476507114 1.667546768 1.537160882 1.002595697 1.151139405 1.146391214 1.054530765 1.155781612 1.195937298 1 14.00992587 -5.227692879 8.530583894 1.109501296 1.572376508 0.883055642 0.076549166 0.101027159 23.82362427 0.020013249 0.034385724 5.92E-06 5.227692879 0.462875212 S(ph)ALAFLNR ddPTM_HeLa_A486_30min_R1 2 SALAFLNR 8 0 Q9H0H5;F8VRD2;F8W1E5;F8VQF5;F8VYH6;F8VQZ5;F8VWX0;F8W1T4;F8W0L1;F8VZ66;F8VV37;F8VV47;F8VWY4;F8VVE5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 S(1)ALAFLNR;S(1)ALAFLNR ; 128.86 0.00056813 85247000 43766 46964 27884.4 13659.3 39966 36454 40374 38651 34290 43746 TRUE FALSE FALSE 40698.22941 43242.4016 38681.98645 31799.5407 34953.09161 31956.67612 30271.99817 29851.01105 37262.28481 32791.71686 1.241113101 1.31869892 1.179626752 0.969743086 1.065912217 0.97453501 0.923159903 0.910321688 1.136332232 1 15.00104382 -5.103432931 3.177173261 0.991785871 1.278151476 0.761259464 0.065308084 0.114788648 2.193964371 0.018420335 0.03631772 7.88E-06 5.103432931 0.286365605 S(ph)ALEDKER ddPTM_HeLa_A485_30min_R1 1 SALEDKER 8 1 F8VQZ7;P50579-3;P50579-2;P50579;F8VSC4;G3V1U3 F8VQZ7 METAP2 Methionine aminopeptidase 2 1 0 S(1)ALEDKER 110.08 0.00059385 251410000 212440 195280 130570 204880 149710 198310 250080 268000 140620 216150 TRUE FALSE FALSE 259696.5451 218116.2973 178873.2765 216072.0756 134804.3467 208693.205 196648.365 202272.5798 168841.1442 162267.7829 1.60041963 1.344175001 1.10233389 1.331577173 0.830752379 1.286103755 1.211875589 1.246535672 1.040509343 1 17.30801707 -4.380947935 1.965263362 1.142329791 1.67902477 0.513086373 0.142914846 0.470133958 2.364980186 0.037399868 0.417807604 4.16E-05 4.380947935 0.536694979 S(ph)ALEDKER ddPTM_HeLa_A486_30min_R1 3 SALEDKER 8 1 F8VQZ7;P50579-3;P50579-2;P50579;F8VSC4;G3V1U3 F8VQZ7 METAP2 Methionine aminopeptidase 2 1 0 S(1)ALEDKER;S(1)ALEDKER;S(1)ALEDKER ;; 133.05 0.00025001 374990000 574670 502530 262287 182703 365048 485140 536930 459090 365900 779680 TRUE FALSE FALSE 534388.6006 462707.6926 363851.5507 425341.8173 319260.2759 425288.3593 402584.4349 354565.2289 397616.5066 584443.0531 0.914355296 0.791707062 0.62256117 0.727772903 0.54626413 0.727681435 0.688834323 0.606671988 0.680334045 1 19.15670293 -9.656502206 6.838410226 1 0.695001178 0.458097685 0.097486259 3.00E-10 2.12E-10 0.097225529 0.023580655 2.21E-10 9.656502206 -0.304998822 S(ph)APAMQSSGSFNYARPK ddPTM_HeLa_A486_30min_R1 1 SAPAMQSSGSFNYARPK 17 1 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 S(1)APAMQSSGSFNYARPK 92.492 0.00038825 105790000 90390 77937 56486 36180 85948 94347 70490 98272 70849 89152 TRUE FALSE FALSE 84054.12777 71760.98828 78358.89195 84228.86844 75167.60041 82707.42639 52852.65643 75897.61086 76990.24836 66827.75892 1.257772655 1.073820063 1.172550048 1.260387447 1.124796067 1.237620829 0.79087878 1.135719828 1.152069883 1 16.02815987 S(ph)APAS(ph)PTHPGLMS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 3 0 S(1)APAS(0.5)PT(0.5)HPGLMS(1)PR;S(1)APAS(0.973)PT(0.027)HPGLMS(1)PR ; 126.07 2.11E-05 1076060000 488740 777710 715460 585390 919070 682430 812220 937950 716390 788870 TRUE FALSE FALSE 597458.5269 868656.4193 980138.4268 617368.3734 827564.1637 718160.9796 638682.5618 707916.2919 860162.9019 592219.2271 1.008846892 1.46678186 1.655026352 1.04246594 1.397394961 1.212660695 1.078456309 1.195361885 1.452440013 1 19.1757718 -5.284443804 24.99818066 1.209175571 1.385874835 0.141513638 0.201141683 1532.457977 1665270.255 0.056332562 0.083614408 5.19E-06 5.284443804 0.176699264 S(ph)APAS(ph)PTHPGLMS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 3 0 S(0.999)APAS(0.839)PT(0.163)HPGLMS(0.999)PR;S(1)APAS(0.987)PT(0.013)HPGLMS(1)PR;S(0.998)APAS(0.959)PT(0.043)HPGLMS(1)PR ;; 120.63 5.54E-05 1114250000 680020 815280 654010 342547 898910 808320 956120 901380 702710 871820 TRUE FALSE FALSE 632354.1096 750674.2436 907260.187 797466.7274 786160.3258 708597.6968 716888.6632 696155.451 763621.4686 653510.5974 0.967626404 1.148679527 1.388286878 1.220281248 1.202980225 1.084294118 1.09698093 1.06525503 1.168491332 1 19.31785111 -6.262298763 24.15964422 1.087956259 1.196711696 0.192920431 0.103399919 86.27694363 2425436.545 0.037204081 0.034761461 5.47E-07 6.262298763 0.108755436 S(ph)APAS(ph)PTHPGLMSPR ddPTM_HeLa_A485_30min_R1 6 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 S(0.932)APAS(0.827)PT(0.24)HPGLMS(0.001)PR;S(1)APAS(0.975)PT(0.025)HPGLMSPR;S(1)APAS(0.796)PT(0.204)HPGLMSPR;S(1)APAS(0.983)PT(0.017)HPGLMSPR;S(1)APAS(0.999)PT(0.001)HPGLMSPR;S(0.986)APAS(0.827)PT(0.174)HPGLMS(0.013)PR ;;;;; 171.35 2.79E-12 11871820000 1461660 1911890 1784770 1621710 2430810 2060800 2733950 2965020 1994320 2379450 TRUE FALSE FALSE 1786801.224 2135468.904 2445030.693 1710299.911 2188790.021 2168700.301 2149819.248 2237844.196 2394561.731 1786296.906 1.000282326 1.195472543 1.368770604 0.957455564 1.225322629 1.214076056 1.203506115 1.252784008 1.340517203 1 20.76854046 S(ph)APAS(ph)PTHPGLMSPR ddPTM_HeLa_A486_30min_R1 5 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 S(1)APAS(0.934)PT(0.066)HPGLMSPR;S(1)APAS(0.961)PT(0.039)HPGLMSPR;S(1)APAS(0.98)PT(0.02)HPGLMSPR;S(1)APAS(0.983)PT(0.017)HPGLMSPR;S(1)APAS(0.964)PT(0.036)HPGLMSPR ;;;; 135.38 9.70E-06 11365520000 1644720 1974280 1491450 354365 2170100 1894000 2210650 2253530 1716550 1834560 TRUE FALSE FALSE 1529433.621 1817830.863 2068979.382 824979.6286 1897905.823 1660337.537 1657521.988 1740450.413 1865341.936 1375174.235 1.11217443 1.321891304 1.504521631 0.599909166 1.38012026 1.207365216 1.205317803 1.265621744 1.356440434 1 20.39118299 S(ph)APASPT(ph)HPGLMS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 3 0 S(0.997)APAS(0.412)PT(0.592)HPGLMS(1)PR 178.71 4.46E-17 740920000 348920 372230 331470 168110 415320 360440 407990 417500 301760 374690 TRUE FALSE FALSE 324462.5098 342733.1392 459824.0611 391368.5758 363226.6929 315972.5775 305906.5867 322444.364 327916.7998 280865.1852 1.155225094 1.220276336 1.637170021 1.39343926 1.293242139 1.124997309 1.089158083 1.148039632 1.167523841 1 18.09951828 -6.174030106 3.139183621 1.11192956 1.361102308 0.468648196 0.125425129 0.258497378 4.929880773 0.047688592 0.046990188 6.70E-07 6.174030106 0.249172748 S(ph)APASPT(ph)HPGLMSPR ddPTM_HeLa_A485_30min_R1 4 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 S(1)APAS(0.061)PT(0.937)HPGLMS(0.002)PR;S(1)APAS(0.313)PT(0.687)HPGLMSPR;S(1)APAS(0.295)PT(0.705)HPGLMSPR;S(1)APAS(0.25)PT(0.75)HPGLMS(0.001)PR ;;; 190.19 1.06E-17 3867830000 1301002 1737691 1810589 1618597 2324940 1903860 2346860 2448690 1757470 2161360 TRUE FALSE FALSE 1590405.406 1940898.847 2480401.216 1707016.856 2093460.81 2003543.166 1845434.189 1848144.938 2110178.109 1622572.729 0.980175112 1.19618604 1.528684152 1.052043354 1.29021077 1.234794059 1.137350675 1.139021324 1.300513728 1 20.62985172 -6.757795516 24.77752846 1.155806541 1.223336585 0.043076413 0.152605638 329.7195033 2242042.896 0.05976078 0.044419074 1.75E-07 6.757795516 0.067530044 S(ph)APASPT(ph)HPGLMSPR ddPTM_HeLa_A486_30min_R1 6 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 S(1)APAS(0.407)PT(0.594)HPGLMSPR;S(1)APAS(0.193)PT(0.807)HPGLMSPR;S(1)APAS(0.053)PT(0.947)HPGLMSPR;S(1)APAS(0.257)PT(0.742)HPGLMSPR;S(1)APAS(0.255)PT(0.745)HPGLMSPR;S(1)APAS(0.097)PT(0.901)HPGLMS(0.002)PR ;;;;; 178.34 8.14E-14 4042660000 2352900 2828820 2162610 619926 3037920 2558220 3150860 3145470 2334330 2718960 TRUE FALSE FALSE 2187973.86 2604654.001 3000030.509 1443219.057 2656875.746 2242612.826 2362481.502 2429315.146 2536671.604 2038114.719 1.073528315 1.277972225 1.471963517 0.708114732 1.303594799 1.100336898 1.159150405 1.1919423 1.244616694 1 20.95880383 -11.2787933 2.219053472 0.290220906 1.17078631 0.068473815 0.188243394 8985312.815 867638.1087 32278363.1 0.048409516 5.26E-12 11.2787933 0.880565404 S(ph)APASPTHPGLMSPR ddPTM_HeLa_A485_30min_R1 4 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 S(0.495)APAS(0.495)PT(0.011)HPGLMSPR;S(1)APASPTHPGLMSPR;S(0.999)APASPT(0.001)HPGLMSPR;S(1)APASPTHPGLMSPR ;;; 131.25 1.31E-05 594420000 522199 683480 667338 558223 897060 620629 788200 850540 580818 882171 TRUE FALSE FALSE 638360.366 763407.0405 914214.0965 588717.309 807745.5566 653124.1748 619794.631 641943.7314 697382.845 662262.0049 0.963909089 1.152726617 1.380441713 0.888949245 1.21967673 0.986202092 0.935875268 0.969319887 1.05303164 1 19.33704257 -6.299952133 19.34159646 0.98365422 1.124401339 0.209575643 0.128143301 60.9222309 30594.54447 0.044723781 0.039447442 5.01E-07 6.299952133 0.140747119 S(ph)APASPTHPGLMSPR ddPTM_HeLa_A486_30min_R1 4 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 S(0.477)APAS(0.477)PT(0.046)HPGLMSPR;S(0.484)APAS(0.484)PT(0.033)HPGLMSPR;S(1)APASPTHPGLMSPR;S(1)APASPTHPGLMSPR ;;; 185.25 5.19E-18 1609340000 802390 831130 691010 174348 990570 775650 889970 919960 765030 899330 TRUE FALSE FALSE 746146.6045 765268.2319 958587.5779 405890.9551 866323.4739 679958.1892 667290.0929 710505.1906 831343.4164 674131.9143 1.106825814 1.135190629 1.421958459 0.602094258 1.285094883 1.008642633 0.989850916 1.053955725 1.233205844 1 19.3626714 S(ph)APASQASLR ddPTM_HeLa_A486_30min_R1 2 SAPASQASLR 10 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 S(1)APASQASLR;S(1)APASQASLR ; 91.245 0.0030615 705840000 333140 318690 352640 126230 389380 367750 353570 314430 327470 445050 TRUE FALSE FALSE 309788.6063 293435.8438 489191.652 293869.8193 340540.3296 322380.744 265103.0463 242841.153 355855.3633 333606.5832 0.928604596 0.879586491 1.466372897 0.880887351 1.020784201 0.966350067 0.794657719 0.727926741 1.06669167 1 18.34778823 -6.209717364 1.713901361 0.879016156 1.055886694 0.105182921 0.181044556 0.733439268 4.266247525 0.076350726 0.072288371 6.17E-07 6.209717364 0.176870538 S(ph)APDLK ddPTM_HeLa_A486_30min_R1 1 SAPDLK 6 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 S(1)APDLK 82.279 0.019912 1001600000 2024000 1904500 1214500 915680 1947300 2407500 3052600 2932300 1861400 3003900 TRUE FALSE FALSE 1882128.052 1753580.484 1684786.925 2131749.316 1703051.476 2110487.128 2288807.193 2264679.302 2022747.651 2251703.888 0.835868367 0.778779347 0.748227569 0.9467272 0.756339004 0.937284489 1.016477879 1.005762487 0.898318674 1 21.10258569 -6.422570788 4.9394883 0.980353742 0.815703845 0.638163574 0.060221672 0.147536054 5.677208448 0.021590235 0.018765899 3.78E-07 6.422570788 -0.164649897 S(ph)APDRQEEISR ddPTM_HeLa_A485_30min_R1 1 SAPDRQEEISR 11 1 Q5TA58;A0A6I8PTZ8;Q9H9G7-2;Q9UL18;Q9H9G7;Q9HCK5 Q5TA58 AGO1;AGO3;AGO4 Protein argonaute;Protein argonaute-3;Protein argonaute-1;Protein argonaute-4 1 0 S(1)APDRQEEISR 45.115 0.030365 3096400000 634820 1486000 1698800 142100 1555600 875630 691890 812770 1159900 306200 TRUE FALSE FALSE 776033.5189 1659774.774 2327256.813 149862.5632 1400719.002 921476.6328 544062.0493 613436.8831 1392681.291 229869.9752 3.375967297 7.220493986 10.12423137 0.651944923 6.093527442 4.008686354 2.366825197 2.668625525 6.058561104 1 17.81045851 -5.265363154 24.99946867 3.44509076 6.938257122 0.344311797 2.294074587 388.5098292 2475308.422 0.630984784 0.976688828 5.43E-06 5.265363154 3.493166362 S(ph)APPMEGAR ddPTM_HeLa_A485_30min_R1 2 SAPPMEGAR 9 0 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 S(1)APPMEGAR;S(1)APPMEGAR ; 112.83 0.0012258 378210000 272570 371670 351670 214219 443040 303100 280860 320660 289400 279690 TRUE FALSE FALSE 333202.2561 415133.5734 481767.3672 225921.2415 398929.382 318969.8473 220851.9666 242017.6322 347479.9255 209968.4303 1.586915974 1.977123765 2.294475253 1.07597719 1.899949347 1.519132409 1.051834156 1.152638194 1.654915098 1 17.6798129 -6.047460347 0.843146352 1.21992376 1.896596954 0.354638542 0.340592202 0.697157726 1.092512038 0.203109939 0.240763031 8.96E-07 6.047460347 0.676673195 S(ph)APPMEGAR ddPTM_HeLa_A486_30min_R1 2 SAPPMEGAR 9 0 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 S(1)APPMEGAR;S(1)APPMEGAR ; 111.27 0.00088099 951380000 504240 369340 400570 89949 392980 316730 352640 400990 334010 390540 TRUE FALSE FALSE 468895.3799 340072.1533 555681.4316 209405.8178 343688.784 277655.0729 264405.7422 309693.3306 362962.2557 292746.242 1.601712721 1.161661892 1.8981676 0.715315135 1.174016041 0.948449657 0.903190901 1.057890029 1.239852827 1 18.15929113 -5.26771954 24.99936548 1.008320439 1.514628855 0.574927797 0.215255416 360.8872832 1436580.307 0.057440438 0.087622308 5.40E-06 5.26771954 0.506308416 S(ph)APPNLWAAQR ddPTM_HeLa_A485_30min_R1 4 SAPPNLWAAQR 11 0 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR ;;; 142.77 1.09E-06 3075730000 276228 267023 222486 240022 352602 210107 262292 238859 193706 283170 TRUE FALSE FALSE 337673.9656 298249.0171 304792.8298 253133.7941 317495.7068 221107.8776 206251.1715 180278.4557 232581.0174 212580.9304 1.588448997 1.402990459 1.433773148 1.190764353 1.493528635 1.040111534 0.970224239 0.848046226 1.094082226 1 17.69765266 -6.348043901 4.652458988 0.97116211 1.408460553 0.793991045 0.109878773 0.102527737 3.890961545 0.039736056 0.034962109 4.49E-07 6.348043901 0.437298443 S(ph)APPNLWAAQR ddPTM_HeLa_A486_30min_R1 4 SAPPNLWAAQR 11 0 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR;S(1)APPNLWAAQR ;;; 148.89 7.26E-07 3499910000 293686 264753 196946 82896 292103 221475 270995 248251 190970 236902 TRUE FALSE FALSE 273100.128 243773.0081 273208.7656 192986.0773 255464.718 194151.6663 203189.1847 191729.6666 207523.4334 177580.1972 1.537897425 1.372748831 1.538509191 1.086754494 1.438587872 1.093318226 1.144210829 1.07967932 1.168618104 1 17.43811118 -4.381845058 0.281380348 1.007343309 1.923090838 0.644405203 0.115802301 4.829771957 0.334871631 0.137609743 1.529725823 4.15E-05 4.381845058 0.91574753 S(ph)APSFRPK ddPTM_HeLa_A485_30min_R1 4 SAPSFRPK 8 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 S(0.999)APS(0.001)FRPK;S(0.999)APS(0.001)FRPK;S(0.996)APS(0.004)FRPK;S(0.999)APS(0.001)FRPK ;;; 142 0.00019334 1211330000 638251 680478 498461 725058 829718 786898 1036298 1143510 652112 947516 TRUE FALSE FALSE 780227.733 760053.9827 682862.4666 764666.0826 747108.3626 828098.7625 814884.4665 863062.3795 782984.8969 711317.6989 1.096876591 1.068515494 0.959996451 1.074999376 1.050316003 1.164175675 1.145598469 1.213328982 1.100752727 1 19.44013454 -6.249527077 22.5581075 1.139405935 1.047534588 0.250555942 0.061922855 232.0827052 439489.6516 0.019920279 0.019732476 5.63E-07 6.249527077 -0.091871347 S(ph)APSFRPK ddPTM_HeLa_A486_30min_R1 3 SAPSFRPK 8 1 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-3 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 S(0.991)APS(0.009)FRPK;S(0.982)APS(0.018)FRPK;S(0.992)APS(0.008)FRPK ;; 133.23 0.00024893 752910000 816537 970641 638124 407061 1080292 1049361 1186302 1136212 854403 1104778 TRUE FALSE FALSE 759301.9729 893723.8721 885222.7024 947658.5797 944791.704 919901.5089 889476.6922 877521.3309 928463.34 828134.3979 0.916882543 1.079201485 1.068936038 1.14432945 1.140867601 1.110811858 1.074072873 1.059636374 1.121150555 1 19.6595054 -4.184308488 2.523918798 1.09594937 0.854552355 0.607571378 0.041249418 0.472352414 3.148770046 0.01062664 0.264200962 6.54E-05 4.184308488 -0.241397014 S(ph)APSGPVR ddPTM_HeLa_A486_30min_R1 2 SAPSGPVR 8 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 S(0.983)APS(0.017)GPVR;S(0.981)APS(0.019)GPVR ; 85.862 0.0046991 345070000 227310 315380 295810 123589 348250 291920 295360 293300 258930 293080 TRUE FALSE FALSE 211376.7428 290388.1402 410355.5541 287721.4378 304569.2377 255905.8784 221457.804 226521.9927 281374.2609 219690.8604 0.962155378 1.321803464 1.867877222 1.309665033 1.386353703 1.164845356 1.008042864 1.031094295 1.280773631 1 17.74511533 -6.344579837 3.180551171 1.08229652 1.394002535 0.281919967 0.218735578 0.349440158 6.86068941 0.085994764 0.075749887 4.52E-07 6.344579837 0.311706016 S(ph)APTS(ph)PTATNISSK ddPTM_HeLa_A485_30min_R1 2 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 2 0 S(1)APTS(0.92)PT(0.079)AT(0.001)NISSK;S(1)APT(0.005)S(0.799)PT(0.185)AT(0.011)NISSK ; 193.32 1.18E-17 1173890000 1461150 1417000 1005300 1705180 1749860 1543970 2116220 2119940 1225680 2335700 TRUE FALSE FALSE 1786177.777 1582705.824 1377202.304 1798329.666 1575637.794 1624809.882 1664072.309 1600021.391 1471662.733 1753452.975 1.018663062 0.902622338 0.785423004 1.025593324 0.898591417 0.926634421 0.949025912 0.912497463 0.839294098 1 20.74176731 -4.25778297 23.46853182 0.913025356 1.018663161 0.178680671 0.066145962 259.9223526 1668120.466 0.015929452 0.11288018 5.52E-05 4.25778297 0.105637805 S(ph)APTS(ph)PTATNISSK ddPTM_HeLa_A486_30min_R1 2 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 2 0 S(0.999)APT(0.093)S(0.824)PT(0.08)AT(0.004)NISSK;S(1)APTS(0.934)PT(0.065)ATNISSK ; 183.75 4.30E-17 910700000 876990 910260 545370 403540 959800 1006600 1140600 1136700 721940 1196800 TRUE FALSE FALSE 815517.5298 838127.6825 756551.8695 939461.5138 839412.9342 882415.9264 855209.816 877898.224 784518.3405 897113.4901 0.909046111 0.934249336 0.843317906 1.047204756 0.935681988 0.983616829 0.953290554 0.978581009 0.874491744 1 19.77493098 -5.247152276 24.99972317 0.96540713 0.899408948 0.328131164 0.047054866 1009.552574 1766523.509 0.01221699 0.021032855 5.66E-06 5.247152276 -0.065998182 S(ph)ARHT(ph)PAR ddPTM_HeLa_A486_30min_R1 1 SARHTPAR 8 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 S(1)ARHT(1)PAR 72.29 0.013045 254270000 15921 7995.1 13837 4099.9 11147 11030 8545.2 7960 25575 19655 TRUE FALSE FALSE 14805.02012 7361.539158 19195.05697 9544.774397 9748.839318 9669.230745 6407.100578 6147.681766 27791.86159 14733.26007 1.004870616 0.499654464 1.3028384 0.647838588 0.661689217 0.656285893 0.434873242 0.417265543 1.886334828 1 13.84678907 -7.753920834 24.99967206 1.443167488 0.702637578 0.455928986 0.323349189 131.3756926 436843.6118 0.221755047 0.080173921 1.76E-08 7.753920834 -0.74052991 S(ph)AS(ph)LRR ddPTM_HeLa_A485_30min_R1 2 SASLRR 6 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 S(1)AS(1)LRR;S(1)AS(1)LRR ; 48.283 0.027469 2558300000 141624 140006 97742 202854 119715 144694 180310 234990 130065 235130 TRUE FALSE FALSE 173127.7702 156378.4838 133900.8332 213935.4004 107795.7543 152269.9541 141785.2955 177358.334 156167.8525 176516.4182 0.980802647 0.885914667 0.758574384 1.211985845 0.610684011 0.862639043 0.803241403 1.004769618 0.884721399 1 17.42944285 -7.270856149 24.54865266 0.958559122 0.871973997 0.07024665 0.149296379 1669.581692 4352411.988 0.077940963 0.038255107 5.36E-08 7.270856149 -0.086585125 S(ph)AS(ph)LRR ddPTM_HeLa_A486_30min_R1 2 SASLRR 6 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 S(1)AS(1)LRR;S(1)AS(1)LRR ; 48.794 0.026894 29828870000 10741839 6087914 6693040 4288478 6013772 13019127 9761417 8097758 10173983 13861998 TRUE FALSE FALSE 9988891.557 5605485.523 9284764.334 9983793.512 5259468.64 11412959.48 7319007.221 6254075.276 11055872.04 10390863.47 0.961314869 0.539462917 0.893550797 0.960824241 0.506162809 1.098364877 0.704369491 0.601882153 1.063999355 1 23.30881221 -7.785584033 24.99866139 1.032000068 0.783351031 0.219489768 0.187637254 392.0278958 405882.6313 0.171249706 0.044307502 1.64E-08 7.785584033 -0.248649038 S(ph)AS(ph)PERMD ddPTM_HeLa_A485_30min_R1 8 SASPERMD 8 1 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD ;;;;;;; 111.63 0.0008956 45280140000 18328130 20638540 17562890 21909590 21192850 19477400 24996050 23420270 17040710 26369290 TRUE FALSE FALSE 22405159.29 23052037.72 24060133.86 23106455.42 19082815.44 20497206.55 19655439.72 17676412.06 20460624.19 19795911.29 1.13180742 1.164484796 1.215409258 1.167233732 0.963977619 1.035426268 0.992904011 0.892932475 1.033578292 1 24.23869915 -5.756728953 24.86424206 0.983885928 1.172621452 0.819586071 0.042103938 44.06815694 232614.6052 0.012788471 0.01596605 1.75E-06 5.756728953 0.188735524 S(ph)AS(ph)PERMD ddPTM_HeLa_A486_30min_R1 8 SASPERMD 8 1 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD;S(1)AS(1)PERMD ;;;;;;; 113.22 0.00071385 40443280000 17658140 17687460 10877240 5881390 14309680 16289320 18034390 16635850 13906560 22318330 TRUE FALSE FALSE 16420395.57 16285841.25 15089198.63 13692173.15 12514826.5 14279709.32 13521994.87 12848230.11 15111991.82 16729674.9 0.98151313 0.973470277 0.901942131 0.818436295 0.748061548 0.853555697 0.808264055 0.767990424 0.903304572 1 23.99590607 -4.971858353 2.703810138 0.828549963 0.979384188 0.371016777 0.068162203 0.241577972 3.55268831 0.018055465 0.042990697 1.07E-05 4.971858353 0.150834225 S(ph)AS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_A485_30min_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 S(1)AS(1)PHDVDLCLVSPCEFEHR;S(1)AS(1)PHDVDLCLVSPCEFEHR ; 169.19 1.50E-13 199534000 66521 62406 83198 97096 129656 65461 103356 106326 94995 143751 TRUE FALSE FALSE 81318.36696 69703.83884 113976.4024 102400.1086 116746.9934 68888.43674 81273.14626 80249.38179 114059.6252 107916.5212 0.753530285 0.645905169 1.056153414 0.948882594 1.081826879 0.638349309 0.75311125 0.743624617 1.056924592 1 16.71955622 -7.7726317 24.98532762 1.028462435 0.832945971 0.225858487 0.148437084 404.5239587 903014.5688 0.148035829 0.039645225 1.69E-08 7.7726317 -0.195516465 S(ph)AS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_A486_30min_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 S(1)AS(1)PHDVDLCLVSPCEFEHR;S(1)AS(1)PHDVDLCLVSPCEFEHR ; 179.5 7.05E-19 201705000 50370 79041 64692 31489 74451 78540 95194 77384 72501 78390 TRUE FALSE FALSE 46839.32311 72777.5033 89742.47491 73307.98337 65112.66135 68850.53334 71375.45434 59765.35248 78785.44505 58760.63377 0.797120795 1.238541837 1.527255054 1.247569651 1.108100052 1.171711891 1.214681493 1.0170985 1.340786169 1 15.84256234 -5.752186359 24.78378653 1.148031309 1.228375644 0.016281243 0.18936474 750.590035 2010408.763 0.057440518 0.073095754 1.77E-06 5.752186359 0.080344335 S(ph)AS(ph)PHDVDLCLVSPCEFEHRK ddPTM_HeLa_A485_30min_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 S(1)AS(1)PHDVDLCLVSPCEFEHRK;S(1)AS(1)PHDVDLCLVSPCEFEHRK ; 181.38 5.80E-19 438620000 274750 251580 195985 366590 389850 296960 456700 479760 275290 467270 TRUE FALSE FALSE 335867.1896 281000.0925 268488.0071 386615.8834 351035.1652 312508.3664 359122.3141 362098.1078 330538.1779 350788.1885 0.957464364 0.801053461 0.76538497 1.102134839 1.000704062 0.890874826 1.023758285 1.032241448 0.942272827 1 18.42024065 -5.254049533 24.99912567 0.996814062 0.837276185 0.519092208 0.069442317 465.5635049 1574951.827 0.019223178 0.032456993 5.57E-06 5.254049533 -0.159537877 S(ph)AS(ph)PHDVDLCLVSPCEFEHRK ddPTM_HeLa_A486_30min_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 S(1)AS(1)PHDVDLCLVSPCEFEHRK;S(1)AS(1)PHDVDLCLVSPCEFEHRK ; 180.9 5.98E-19 630010000 452725 586720 370053 282446 639080 638980 854750 783620 501608 755990 TRUE FALSE FALSE 420991.3154 540226.1704 513347.432 657548.562 558920.6272 560149.1443 640882.5094 605206.8323 545087.7853 566685.1833 0.742901575 0.95330915 0.905877632 1.160341899 0.98629829 0.98846619 1.130932179 1.067977159 0.96188819 1 19.11218796 -3.896026745 1.00523431 1.041814609 0.375745918 0.607971396 0.070099099 2.364607276 1.175636221 0.022274569 2.016005226 0.00012705 3.896026745 -0.66606869 S(ph)AS(ph)PPPATSSSSSSR ddPTM_HeLa_A485_30min_R1 2 SASPPPATSSSSSSR 15 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)AS(1)PPPATSSSSSSR;S(1)AS(0.992)PPPAT(0.007)S(0.001)SSSSSR ; 179.55 2.20E-17 2190340000 913820 940340 899360 1232780 1349440 959000 1245880 1085830 895960 1656860 TRUE FALSE FALSE 1117096.106 1050304.583 1232070.689 1300123.65 1215085.015 1009211.757 979687.5601 819528.49 1075770.954 1243835.294 0.898106133 0.844408088 0.99054167 1.045253866 0.976885783 0.811370896 0.787634476 0.658872195 0.864882158 1 20.24636403 -6.283617583 9.42163318 0.800796702 0.952548837 0.293407969 0.094606362 0.435284284 177.7097847 0.033669503 0.030170631 5.20E-07 6.283617583 0.151752135 S(ph)AS(ph)PPPATSSSSSSR ddPTM_HeLa_A486_30min_R1 4 SASPPPATSSSSSSR 15 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)AS(0.999)PPPAT(0.001)SSSSSSR;S(1)AS(1)PPPATSSSSSSR;S(1)AS(0.998)PPPAT(0.001)SSSSSSR;S(1)AS(0.995)PPPAT(0.004)S(0.001)SSSSSR ;;; 152.07 9.10E-08 2394000000 948052 1086060 775549 388242 1055580 1036759 1182793 1135047 852923 1163861 TRUE FALSE FALSE 881598.4505 999996.6502 1075862.343 903846.9967 923179.3135 908854.2156 886845.6811 876621.576 926855.0524 872422.6301 1.010517632 1.146229609 1.233189403 1.03601966 1.058179008 1.041759102 1.016532183 1.004812972 1.062392263 1 19.73466767 -5.466841811 24.98689561 1.03219675 1.132104167 0.413818228 0.05376914 281.5362376 125536.6618 0.015318153 0.02272039 3.41E-06 5.466841811 0.099907416 S(ph)AS(ph)PPPATSSSSSSRR ddPTM_HeLa_A485_30min_R1 1 SASPPPATSSSSSSRR 16 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)AS(0.98)PPPAT(0.008)S(0.002)S(0.002)S(0.002)S(0.002)S(0.001)S(0.004)RR 58.01 0.014129 410810000 111400 265430 159450 76180 238390 266630 327260 494730 138990 123760 TRUE FALSE FALSE 136180.5457 296469.7296 218437.1903 80341.5205 214655.0546 280590.3345 257338.2275 373396.6918 166884.0181 92908.90963 1.465742588 3.190972004 2.351089805 0.864734295 2.310381807 3.020058417 2.769790632 4.018954622 1.796211136 1 16.50352933 -6.00597114 24.99995846 2.718568393 2.020924704 0.05160703 0.933368504 637.961429 2671030.457 0.289801852 0.318243066 9.86E-07 6.00597114 -0.697643689 S(ph)AS(ph)PPPATSSSSSSRR ddPTM_HeLa_A486_30min_R1 1 SASPPPATSSSSSSRR 16 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(0.998)AS(0.982)PPPAT(0.005)S(0.002)S(0.003)S(0.003)S(0.003)S(0.002)S(0.002)RR 43.12 0.010184 0 214850 142590 113320 89636 243370 121930 192710 221690 90613 220200 TRUE FALSE FALSE 199790.1245 131290.6491 157200.5388 208677.138 212844.2653 106887.5163 144491.9197 171216.0265 98467.4078 165060.4867 1.210405521 0.795409317 0.952381408 1.264246472 1.289492534 0.64756574 0.875387699 1.03729263 0.59655348 1 17.33263527 -6.263477973 24.99782787 0.836442443 1.085991271 0.340527791 0.18782594 251.1873187 3080116.235 0.066967198 0.062008314 5.45E-07 6.263477973 0.249548828 S(ph)AS(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SASPSPR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)AS(1)PS(1)PR 67.207 0.019335 121360000 290810 305810 166060 336550 171320 286870 276430 316250 183920 297050 TRUE FALSE FALSE 355499.6812 341571.8193 227492.5043 354934.8743 154262.7793 301890.0696 217368.4723 238689.1916 220831.057 223000.9018 1.594162527 1.531706 1.020141634 1.591629771 0.691758545 1.353761654 0.974742571 1.070350791 0.990269794 1 17.76669002 -1.968710297 0.382772949 1.004093126 5.374015917 0.410017759 0.228025854 30.12278766 0.832160247 0.163178151 86.75066408 0.010747061 1.968710297 4.369922791 S(ph)AS(ph)PYPSHSLSS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(1)AS(0.945)PY(0.007)PS(0.048)HSLS(0.097)S(0.903)PQR 313.08 5.25E-78 1396200000 511310 575270 521920 601040 792130 584040 840330 864810 522910 817510 TRUE FALSE FALSE 625049.1455 642542.8223 714999.9269 633873.2933 713262.7559 614619.4313 660786.6306 652713.9915 627853.2406 613719.8022 1.018460124 1.046964462 1.165026653 1.032838261 1.162196092 1.001465863 1.07669107 1.063537447 1.023029139 1 19.22722061 -7.845595199 0.838927352 0.998947754 1.077982295 0.177536721 0.051925329 1.0163442 1.602097127 0.048275194 0.017950325 1.43E-08 7.845595199 0.079034541 S(ph)ASAGPAGESKPK ddPTM_HeLa_A485_30min_R1 1 SASAGPAGESKPK 13 1 F5H5Z1;H0YGL7;F5H510;Q8N5U6;Q8N5U6-2 F5H5Z1 RNF10 RING finger protein 10 1 0 S(0.537)AS(0.462)AGPAGES(0.001)KPK 44.252 0.034812 60028000 58801 45465 26383 87848 70044 77066 107730 94790 46521 114050 TRUE FALSE FALSE 71881.07959 50781.73626 36143.16959 92646.9138 63070.17342 81101.05659 84712.60543 71542.60388 55857.33798 85619.43393 0.839541635 0.593109928 0.422137451 1.082078093 0.736633852 0.947227199 0.989408614 0.835588377 0.652390882 1 16.38565068 -5.260985545 24.99999601 0.884951626 0.615747705 0.401894313 0.152802179 41.92824929 2309608.824 0.042155545 0.067639121 5.48E-06 5.260985545 -0.269203921 S(ph)ASAPTLAETEKETAEHLDLAGASSRPK ddPTM_HeLa_A486_30min_R1 1 SASAPTLAETEKETAEHLDLAGASSRPK 28 2 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.417)AS(0.417)APT(0.143)LAET(0.012)EKET(0.01)AEHLDLAGASSRPK 52.722 0.012692 88954000 32838 31172 21129 13604 34637 35126 44434 43013 22869 37010 TRUE FALSE FALSE 30536.22578 28701.81719 29310.71465 31670.79951 30292.50448 30792.51125 33316.14323 33219.87887 24851.30333 27742.45511 1.100703801 1.034581009 1.056529227 1.14160046 1.091918663 1.109941825 1.20090825 1.197438321 0.895786016 1 14.75980785 -7.767932263 24.999999 0.947892966 1.114544805 0.595253838 0.055657014 123.8358412 476792.0197 0.053610008 0.01514914 1.71E-08 7.767932263 0.16665184 S(ph)ASASHQADIK ddPTM_HeLa_A485_30min_R1 7 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 S(0.887)AS(0.101)AS(0.012)HQADIK;S(0.821)AS(0.175)AS(0.004)HQADIK;S(0.902)AS(0.089)AS(0.009)HQADIK;S(0.513)AS(0.446)AS(0.041)HQADIK;S(0.928)AS(0.069)AS(0.002)HQADIK;S(0.892)AS(0.097)AS(0.011)HQADIK;S(0.736)AS(0.132)AS(0.132)HQADIK ;;;;;; 162.94 4.83E-08 9953230000 12951940 10415530 5460176 12382720 8106890 9620020 12839080 17734220 9098290 29935810 TRUE FALSE FALSE 15833054.37 11633535.63 7480122.319 13059156.64 7299739.567 10123709.37 10095905.67 13384874.74 10924233.35 22473363.49 0.704525354 0.517658856 0.332843916 0.581094888 0.324817403 0.450475932 0.449238748 0.595588406 0.486096945 1 24.42171273 -9.139641675 0.826445124 1.01491141 0.478572787 0.654201621 0.110349537 5.137328518 3.122933785 0.366789091 0.036631172 7.25E-10 9.139641675 -0.536338623 S(ph)ASASHQADIK ddPTM_HeLa_A486_30min_R1 4 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 S(0.833)AS(0.161)AS(0.006)HQADIK;S(0.575)AS(0.418)AS(0.008)HQADIK;S(0.911)AS(0.081)AS(0.008)HQADIK;S(0.703)AS(0.288)AS(0.009)HQADIK ;;; 164.2 4.44E-08 5997930000 14961000 12946800 7906500 2211240 12813800 12223100 13405700 10862700 12072200 14683000 TRUE FALSE FALSE 13912311.16 11920848.42 10968108.54 5147878.47 11206573.72 10715138.2 10051452.07 8389500.341 13118628.02 11006281.23 1.26403377 1.083095023 0.996531736 0.467721873 1.018198017 0.973547557 0.913246887 0.76224659 1.191921935 1 23.39182376 -4.60399106 2.473717721 0.894749163 1.245495988 0.27068733 0.181364376 0.398734199 4.489106811 0.048510335 0.215500945 2.49E-05 4.60399106 0.350746824 S(ph)ASDSGCDPASK ddPTM_HeLa_A485_30min_R1 3 SASDSGCDPASK 12 0 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 S(0.999)AS(0.001)DSGCDPASK;S(0.983)AS(0.017)DSGCDPASK;S(0.992)AS(0.008)DSGCDPASK ;; 240.37 3.38E-41 700400000 937990 754340 591890 1255630 973930 695850 1006480 790600 596030 1332470 TRUE FALSE FALSE 1146642.639 842553.5011 810854.7416 1324221.887 876962.1095 732283.63 791437.3258 596704.1104 715647.7539 1000309.751 1.146287575 0.8422926 0.810603656 1.323811835 0.876690553 0.732056874 0.791192253 0.596519338 0.71542615 1 19.93201538 -5.998599003 24.99797441 0.750113466 1.0138991 0.35717661 0.165409067 52.55699361 937740.0803 0.051718068 0.058207381 1.00E-06 5.998599003 0.263785634 S(ph)ASDSGCDPASK ddPTM_HeLa_A486_30min_R1 4 SASDSGCDPASK 12 0 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 S(0.999)AS(0.001)DSGCDPASK;S(0.994)AS(0.006)DSGCDPASK;S(1)ASDSGCDPASK;S(1)ASDSGCDPASK ;;; 255.93 2.93E-33 1161420000 1616350 1799660 942820 699242 1580550 1916120 2093860 1965930 1479190 2149200 TRUE FALSE FALSE 1503052.212 1657048.387 1307905.154 1627870.714 1382302.681 1679728.596 1569954.081 1518330.655 1607407.38 1611026.331 0.932978054 1.028566918 0.81184592 1.010455684 0.858026126 1.042645029 0.974505538 0.942461725 0.997753636 1 20.61954864 -6.273421331 24.98810605 0.98681656 0.932027031 0.192872367 0.063969289 1461.899193 3048752.58 0.021450723 0.019059685 5.33E-07 6.273421331 -0.054789528 S(ph)ASDSGCDPASKK ddPTM_HeLa_A485_30min_R1 4 SASDSGCDPASKK 13 1 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 S(0.993)AS(0.006)DS(0.001)GCDPASKK;S(0.997)AS(0.002)DSGCDPASKK;S(0.996)AS(0.003)DS(0.001)GCDPASKK;S(0.994)AS(0.004)DS(0.001)GCDPASKK ;;; 91.657 0.00087395 1334470000 2332680 1612570 997210 2975990 2148360 1728160 2919510 2460400 1251260 3122300 TRUE FALSE FALSE 2851576.618 1801146.034 1366119.476 3138560.798 1934461.735 1818643.785 2295732.838 1856983.042 1502376.405 2343968.072 1.216559497 0.768417478 0.582823415 1.338994689 0.825293552 0.775882491 0.979421548 0.792239052 0.640954296 1 21.16052149 S(ph)ASDSGCDPASKK ddPTM_HeLa_A486_30min_R1 4 SASDSGCDPASKK 13 1 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 S(0.995)AS(0.005)DSGCDPASKK;S(0.985)AS(0.015)DSGCDPASKK;S(0.995)AS(0.005)DSGCDPASKK;S(0.998)AS(0.002)DSGCDPASKK ;;; 142.91 6.30E-08 1107340000 2167880 1942180 872480 1049350 1810580 2340540 3007960 2777860 1526050 3072340 TRUE FALSE FALSE 2015922.807 1788274.584 1210327.622 2442939.831 1583480.173 2051787.972 2255336.593 2145401.918 1658329.243 2303006.066 0.875344115 0.77649582 0.525542524 1.060761353 0.687570995 0.890917311 0.979301195 0.9315659 0.720071591 1 21.13508678 -5.824800169 1.134377637 0.89909815 0.759098746 0.118715665 0.147321869 1.059412831 2.898713595 0.063785814 0.088518066 1.50E-06 5.824800169 -0.139999404 S(ph)ASFAFEFPKDR ddPTM_HeLa_A485_30min_R1 1 SASFAFEFPKDR 12 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 S(0.5)AS(0.5)FAFEFPKDR 62.378 0.012101 48134000 38306 43395 42804 36193 74598 55445 84892 96968 51227 56127 TRUE FALSE FALSE 46827.03755 48469.66776 58638.98082 38170.13194 67170.76119 58348.01447 66754.1307 73186.44596 61507.78902 42135.57184 1.111342163 1.150326568 1.391674024 0.905888547 1.594158054 1.384768544 1.584270197 1.736927797 1.459759209 1 15.36275108 -5.778861488 24.98811988 1.499280935 1.158549546 0.339864294 0.213807951 248.3127112 356147.5922 0.063367266 0.072013777 1.66E-06 5.778861488 -0.340731389 S(ph)ASFSVK ddPTM_HeLa_A486_30min_R1 1 SASFSVK 7 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.998)AS(0.002)FSVK 73.233 0.018422 112410000 179050 195230 106230 76092 204510 183850 232830 225430 158050 243820 TRUE FALSE FALSE 166499.5196 179759.2638 147365.1009 177146.0215 178858.4488 161168.4562 174573.4714 174104.5101 171749.9013 182765.885 0.910998897 0.98354933 0.806305296 0.969251026 0.978620539 0.881830087 0.955175368 0.952609455 0.939726258 1 17.47963728 -10.19426559 0.196815608 1.062261593 0.909336664 0.172068715 0.050073055 40.41393248 1.62004393 1.448683176 0.155458028 6.39E-11 10.19426559 -0.152924929 S(ph)ASLSNLHSLDR ddPTM_HeLa_A485_30min_R1 1 SASLSNLHSLDR 12 0 B0QY53;B0QY54;A0A087WUW0;Q9Y3M2 B0QY53 CBY1 Protein chibby homolog 1 1 0 S(0.59)AS(0.408)LS(0.002)NLHSLDR 159.18 7.49E-09 290990000 179270 203220 211310 177910 254430 210390 255000 254480 190750 245840 TRUE FALSE FALSE 219147.993 226984.8112 289482.3623 187628.7728 229098.0558 221405.6951 200517.1668 192068.381 229031.7753 184556.6123 1.187429647 1.229892597 1.568528803 1.016646168 1.241342984 1.199662761 1.086480535 1.040701704 1.24098385 1 17.4937039 -5.981575913 0.942152473 1.098539384 1.293623936 0.230498858 0.13830731 0.861935346 1.664841426 0.073035639 0.090040103 1.04E-06 5.981575913 0.195084552 S(ph)ASPHDVDLCLVSPCEFEHR ddPTM_HeLa_A485_30min_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.577)AS(0.423)PHDVDLCLVSPCEFEHR;S(0.561)AS(0.439)PHDVDLCLVSPCEFEHR ; 206.49 1.23E-26 532510000 176025 180959 257600 225090 283600 156398 213391 184340 239030 315370 TRUE FALSE FALSE 215181.154 202120.5809 352896.9596 237386.0967 255363.7882 164586.7574 167798.2696 139130.326 287001.1285 236754.063 0.908880512 0.853715364 1.490563479 1.002669579 1.078603615 0.695180287 0.708745048 0.587657607 1.212233171 1 17.85302966 -6.245609416 23.40652307 0.806740695 1.075013723 0.187816865 0.229416863 527.6811062 780239.8381 0.076275785 0.07597286 5.68E-07 6.245609416 0.268273028 S(ph)ASPHDVDLCLVSPCEFEHR ddPTM_HeLa_A486_30min_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.571)AS(0.429)PHDVDLCLVSPCEFEHR;S(0.554)AS(0.446)PHDVDLCLVSPCEFEHR ; 189.45 2.33E-19 1260520000 188270 305040 241983 29863.3 315520 239917 266641 260331 278178 181708 TRUE FALSE FALSE 175073.2452 280867.5195 335685.2981 69523.27161 275944.5395 210318.4798 199924.6016 201059.3143 302290.693 136207.1341 1.285345635 2.062061737 2.464520676 0.510423129 2.025918403 1.544107666 1.467798313 1.4761291 2.219345522 1 17.05544274 S(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_HeLa_A485_30min_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK ; 109.06 5.65E-05 628940000 613010 728240 618200 642640 1007550 779080 1062150 1044660 741350 971140 TRUE FALSE FALSE 749371.9596 813401.3332 846897.9054 677745.7959 907234.7843 819871.4241 835212.9755 788455.497 890132.1449 729052.6705 1.027870811 1.115696254 1.161641593 0.929625284 1.244402251 1.124570909 1.14561404 1.081479472 1.220943535 1 19.47566352 -4.262548014 7.377385912 1.11754598 1.026838704 0.075321155 0.089441502 0.262072438 132.7743993 0.021034488 0.120345181 5.46E-05 4.262548014 -0.090707276 S(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_HeLa_A486_30min_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK ; 95.926 0.00043476 655420000 438000 548750 368460 106291 655320 508210 609130 591690 447820 475550 TRUE FALSE FALSE 407298.4618 505265.0515 511137.5797 247450.8196 573123.655 445512.2173 456719.2313 456975.1035 486637.3982 356469.1847 1.142590943 1.417415791 1.433889945 0.694171699 1.60777896 1.249791669 1.281230611 1.281948407 1.365159792 1 18.44341784 -10.3580056 5.373370889 0.999901955 1.276122369 0.115629388 0.228041392 0.000257168 3.07E-05 0.211995747 0.051398347 4.39E-11 10.3580056 0.276220414 S(ph)ASPS(ph)VGEERPR ddPTM_HeLa_A485_30min_R1 2 SASPSVGEERPR 12 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 2 0 S(0.984)AS(0.032)PS(0.984)VGEERPR;S(0.932)AS(0.1)PS(0.968)VGEERPR ; 103.13 0.0030266 815470000 785350 902620 653410 823780 855750 767220 885130 775880 647930 942610 TRUE FALSE FALSE 960048.3981 1008173.557 895133.5497 868781.0155 770548.5253 807390.4529 696014.7447 585594.2135 777963.6078 707634.6745 1.356700615 1.424709096 1.264965641 1.227725332 1.088907247 1.140970733 0.983579197 0.827537477 1.099385934 1 19.43264522 -5.657160507 0.736760147 0.963089935 1.419001411 0.801089597 0.0768962 0.323677807 0.368269604 0.043867147 0.089167705 2.20E-06 5.657160507 0.455911476 S(ph)ASPS(ph)VGEERPR ddPTM_HeLa_A486_30min_R1 1 SASPSVGEERPR 12 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 2 0 S(0.815)AS(0.194)PS(0.991)VGEERPR 84.092 0.0036631 0 642660 665320 374150 186880 478600 522100 582580 477710 506930 748870 TRUE FALSE FALSE 597612.8527 612597.6201 519030.9001 435066.0844 418569.5252 457688.6103 436812.3221 368945.8613 550871.1006 561348.0777 1.064603009 1.091297262 0.924615084 0.775037987 0.74565059 0.815338341 0.778148781 0.65724971 0.981336042 1 19.0985361 -4.959661585 3.010572291 0.802972437 1.079245034 0.506889344 0.09893877 0.176392036 3.253247049 0.025884937 0.060109175 1.10E-05 4.959661585 0.276272597 S(ph)ASPSTQQEKHPTHHER ddPTM_HeLa_A485_30min_R1 1 SASPSTQQEKHPTHHER 17 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 S(0.504)AS(0.432)PS(0.064)T(0.001)QQEKHPTHHER 58.83 0.017118 72347000 23689 42131 30152 17114 42518 41329 43342 58280 28960 29260 TRUE FALSE FALSE 28958.53632 47057.85396 41306.47953 18048.89449 38284.75863 43492.92253 34081.62763 43986.73862 34772.00636 21966.02049 1.318333302 2.142302197 1.880471683 0.821673388 1.742908264 1.980009194 1.551561315 2.002490102 1.58299071 1 14.4229859 -8.03274748 22.70172198 0.999999985 1.688239218 0.235134864 0.36557436 2025.049478 1403836.42 0.356163954 0.091961138 9.27E-09 8.03274748 0.688239232 S(ph)ASPSTQQEKHPTHHER ddPTM_HeLa_A486_30min_R1 1 SASPSTQQEKHPTHHER 17 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 S(0.484)AS(0.484)PS(0.028)T(0.003)QQEKHPTHHER 54.271 0.02331 83660000 42654 34104 27775 3413.2 50475 33100 43205 43424 30795 29507 TRUE FALSE FALSE 39664.17487 31401.47484 38530.22384 7946.102094 44143.95484 29016.45854 32394.65202 33537.30314 33464.33539 22118.25514 1.793277752 1.4197085 1.7420101 0.359255377 1.995815427 1.311878281 1.464611554 1.516272551 1.512973568 1 14.43294996 -10.66458111 7.415533823 0.998548556 1.445792974 0.098070826 0.414732105 0.009498743 0.000429646 0.383251982 0.092707584 2.16E-11 10.66458111 0.447244418 S(ph)ASPSVPGPTKPKPK ddPTM_HeLa_A485_30min_R1 1 SASPSVPGPTKPKPK 15 2 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ6 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 S(0.498)AS(0.498)PS(0.005)VPGPTKPKPK 110.22 0.00010498 3219400000 3490700 2505500 1556400 4113000 3656200 3961600 5678600 6337100 2981800 5547200 TRUE FALSE FALSE 4267194.172 2798496.43 2132177.127 4337682.775 3292175.89 4169023.25 4465320.72 4782916.289 3580219.909 4164385.129 1.024687689 0.672007114 0.512002867 1.041614222 0.790555097 1.001113759 1.072264112 1.148528808 0.859723536 1 21.98967207 -5.942488936 1.332244004 1.031144899 0.756667801 0.287714738 0.160551711 0.505883191 1.869271386 0.067610567 0.080470364 1.14E-06 5.942488936 -0.274477098 S(ph)ASPTVPR ddPTM_HeLa_A485_30min_R1 1 SASPTVPR 8 0 Q92817;K7EKI0;K7EQ87 Q92817 EVPL Envoplakin 1 0 S(0.598)AS(0.376)PT(0.026)VPR 66.504 0.020663 288060000 271890 424710 408830 339920 505120 384200 519820 546960 391100 498190 TRUE FALSE FALSE 332370.9925 474376.14 560073.2298 358488.9689 454828.4792 404316.1179 408756.2105 412817.2024 469590.1826 374000.4015 0.888691539 1.268384039 1.497520397 0.958525626 1.216117623 1.081057978 1.092929871 1.103788126 1.255587376 1 18.51268029 S(ph)ASPY(ph)PSHSLSS(ph)PQR ddPTM_HeLa_A485_30min_R1 1 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(1)AS(0.178)PY(0.449)PS(0.372)HSLS(0.136)S(0.864)PQR 316.41 1.42E-77 1123700000 611370 730140 610830 733110 905340 694730 987200 998600 640650 1004200 TRUE FALSE FALSE 747367.1473 815523.5216 836801.4358 773157.943 815201.1708 731104.9885 776276.6553 753691.7843 769222.5786 753871.4209 0.991372171 1.081780658 1.110005516 1.025583304 1.081353064 0.969800643 1.029720233 0.999761714 1.020363098 1 19.52395896 -6.25180976 24.92848943 1.005526188 1.060425201 0.387815183 0.033882278 696.5790288 1803257.955 0.011074981 0.010938615 5.60E-07 6.25180976 0.054899014 S(ph)ASPYHGFTIVNR ddPTM_HeLa_A485_30min_R1 2 SASPYHGFTIVNR 13 0 Q9NPI6-2;Q9NPI6;A0A087WT55;A0A087WVE6;A0A087WXD0 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 S(0.5)AS(0.5)PYHGFTIVNR;S(0.499)AS(0.499)PY(0.001)HGFTIVNR ; 112.96 0.00018835 264890000 206224 265730 277580 230810 320400 290370 339670 378180 240280 300300 TRUE FALSE FALSE 252097.8173 296804.812 380268.3931 243418.5659 288499.851 305573.3242 267096.7297 285430.762 288501.992 225440.7366 1.118244294 1.316553594 1.686777637 1.079745256 1.279714817 1.355448571 1.184775803 1.266101089 1.279724314 1 17.78238871 -12.44685155 0.23337125 0.288309949 1.328499229 0.23113388 0.157100522 109.05201 2.093954471 37.41326953 0.276461198 3.57E-13 12.44685155 1.04018928 S(ph)ASPYHGFTIVNR ddPTM_HeLa_A486_30min_R1 2 SASPYHGFTIVNR 13 0 Q9NPI6-2;Q9NPI6;A0A087WT55;A0A087WVE6;A0A087WXD0 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 S(0.645)AS(0.355)PYHGFTIVNR;S(0.679)AS(0.321)PYHGFTIVNR ; 96.673 0.0007891 299517000 216780 269000 261320 63571 337650 266570 288630 279470 259280 281020 TRUE FALSE FALSE 201584.8415 247683.4603 362510.1024 147996.5007 295298.7885 233683.3037 216411.7212 215840.7818 281754.5992 210650.7629 0.956962314 1.175801393 1.720905718 0.702568074 1.401840584 1.109339935 1.027348386 1.024638026 1.337543692 1 17.68449362 -6.490775042 24.82330778 1.094993936 1.199234491 0.029117754 0.263911473 2573.266844 1989711.742 0.09119496 0.080348847 3.23E-07 6.490775042 0.104240555 S(ph)ASPYPS(ph)HSLSS(ph)PQR ddPTM_HeLa_A486_30min_R1 2 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(1)AS(0.138)PY(0.138)PS(0.725)HSLS(0.001)S(0.999)PQR;S(1)AS(0.383)PY(0.013)PS(0.597)HS(0.007)LS(0.049)S(0.951)PQR ; 315.58 4.27E-78 2256500000 1619880 1767300 1201970 531520 1815930 1675830 1907680 1960090 1426480 1875010 TRUE FALSE FALSE 1506334.777 1627252.712 1667404.974 1237405.422 1588159.127 1469083.133 1430358.287 1513820.295 1550128.435 1405495.292 1.071746584 1.157778842 1.186346894 0.880405241 1.129964032 1.045242301 1.017689846 1.077072477 1.102905463 1 20.42264719 S(ph)ASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR ddPTM_HeLa_A486_30min_R1 1 SASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR 35 2 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.499)AS(0.499)QDRLEEVAAPRPWPCS(0.001)T(0.001)S(0.001)QDALSQLGQEGWHR 53.984 0.0071543 146750000 52384 52899 45035 11842 65127 37384 51146 49640 49695 31252 TRUE FALSE FALSE 48712.15211 48707.09059 62473.75808 27568.77446 56958.16437 32771.94217 38348.72983 38338.05563 54002.60261 23426.29578 2.079379197 2.079163135 2.666821876 1.17683029 2.431377325 1.39893829 1.636995033 1.636539382 2.305213044 1 14.51584123 -5.254143398 24.99876187 1.702563753 2.255525541 0.283593117 0.446820994 794.5664916 2722475.043 0.115516196 0.195086324 5.57E-06 5.254143398 0.552961788 S(ph)ASQSSLDKLDQELK ddPTM_HeLa_A485_30min_R1 1 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.419)AS(0.419)QS(0.081)S(0.081)LDKLDQELK 98.943 0.0088752 65775000 77117 52495 39491 143160 82748 66479 139960 104720 71833 221370 TRUE FALSE FALSE 94271.4106 58633.8336 54100.36426 150980.4683 74509.31857 69959.73764 110056.4026 79037.25581 86249.22421 166186.533 0.567262635 0.352819404 0.325540002 0.908500018 0.448347512 0.42097116 0.662246216 0.475593626 0.518990454 1 17.34244395 -14 0.383535972 7.940089805 0.507915495 0.446896499 0.160098303 594.4996962 4.413051762 3435.384682 0.108938401 1.00E-14 14 -7.43217431 S(ph)ASSLHICDSR ddPTM_HeLa_A485_30min_R1 1 SASSLHICDSR 11 0 Q5T760 Q5T760 SRSF11 1 0 S(0.333)AS(0.333)S(0.333)LHICDSR 92.856 0.0017513 326210000 277520 260110 251340 238960 363010 284120 444150 400060 277040 357890 TRUE FALSE FALSE 339253.3666 290527.6018 344321.1251 252013.7797 326867.4498 298996.0839 349253.7241 301944.6577 332639.3868 268674.6095 1.262692322 1.081336277 1.28155439 0.937988819 1.216592258 1.112855749 1.299913396 1.123830266 1.238075259 1 18.03550046 S(ph)ASWGSTDQLK ddPTM_HeLa_A485_30min_R1 1 SASWGSTDQLK 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 S(0.5)AS(0.5)WGSTDQLK 56.783 0.036351 287670000 352360 336830 273560 495670 432470 367600 540900 456440 358940 620950 TRUE FALSE FALSE 430741.2664 376219.3385 374761.2278 522747.197 389411.7683 386846.9676 425332.2963 344497.3743 430975.9656 466158.5927 0.924023011 0.80706297 0.803935042 1.12139346 0.835363274 0.829861282 0.912419728 0.739013245 0.924526486 1 18.83046133 S(ph)AT(ph)PPATR ddPTM_HeLa_A485_30min_R1 4 SATPPATR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)AT(1)PPATR;S(1)AT(1)PPATR;S(1)AT(1)PPATR;S(1)AT(1)PPATR ;;; 112.83 0.0028543 9083670000 1316840 1639210 1022880 1419530 1164960 1323490 1496490 1463450 1086680 1633820 TRUE FALSE FALSE 1609766.515 1830901.35 1401285.878 1497075.329 1048972.492 1392785.89 1176752.686 1104536.593 1304766.708 1226538.742 1.312446529 1.492738295 1.142471762 1.220569133 0.855229807 1.135541701 0.959409308 0.900531353 1.06377945 1 20.22616137 -5.196901113 1.40415611 0.988719985 1.403263485 0.671002072 0.106858223 0.24295411 0.912875935 0.033181484 0.086032791 6.35E-06 5.196901113 0.414543499 S(ph)AT(ph)PPATR ddPTM_HeLa_A486_30min_R1 4 SATPPATR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)AT(1)PPATR;S(1)AT(1)PPATR;S(1)AT(1)PPATR;S(1)AT(1)PPATR ;;; 143.24 0.00097075 8707000000 2909510 2596160 1187770 856840 1424250 2231280 2354130 1965170 1822960 4298280 TRUE FALSE FALSE 2705568.374 2390430.827 1647706.354 1994766.822 1245607.284 1956007.36 1765101.775 1517743.69 1980975.641 3221962.711 0.83972678 0.741917595 0.511398331 0.619115428 0.386598914 0.60708566 0.547834327 0.471061842 0.614835061 1 21.61950837 -10.34020294 6.60577056 1.000018162 0.585403939 0.495291831 0.122937075 3.45E-05 3.44E-06 0.124714172 0.030246307 4.57E-11 10.34020294 -0.414614223 S(ph)ATREPPYR ddPTM_HeLa_A485_30min_R1 2 SATREPPYR 9 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.998)AT(0.002)REPPYR;S(0.987)AT(0.013)REPPYR ; 149.23 3.73E-05 1238770000 89427 93847 109633 115075 142940 95933 120924 100628 110240 157272 TRUE FALSE FALSE 109319.7276 104821.5903 150190.8089 121361.2559 128708.3917 100955.9035 95087.59954 75948.82522 132364.1568 118066.9848 0.925912759 0.887814578 1.272081346 1.027901713 1.090130251 0.855073107 0.805369932 0.643268949 1.121093734 1 16.84924607 -6.269975079 23.92242786 0.857690982 1.044406644 0.197573356 0.152024581 501.3804649 1405179.557 0.053172561 0.047686348 5.37E-07 6.269975079 0.186715662 S(ph)ATREPPYR ddPTM_HeLa_A486_30min_R1 5 SATREPPYR 9 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.984)AT(0.016)REPPYR;S(0.973)AT(0.027)REPPYR;S(0.837)AT(0.163)REPPYR;S(0.999)AT(0.001)REPPYR;S(0.992)AT(0.008)REPPYR ;;;; 169.65 9.21E-07 1898030000 401770 475502 547262 173531 592165 473643 460145 453015 481205 485881 TRUE FALSE FALSE 373607.9977 437821.4898 759176.5026 403988.9378 517890.144 415209.7423 345011.8541 349873.3737 522916.2368 364213.235 1.025794677 1.202102086 2.084428652 1.109209932 1.421942132 1.14001827 0.947279837 0.960627841 1.435741995 1 18.47442382 -6.344460178 4.364572269 1.078305859 1.385144185 0.170882645 0.299199054 0.409396349 14.2431499 0.110497259 0.097345407 4.52E-07 6.344460178 0.306838326 S(ph)ATREPPYRVPR ddPTM_HeLa_A485_30min_R1 2 SATREPPYRVPR 12 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.923)AT(0.077)REPPYRVPR;S(0.757)AT(0.243)REPPYRVPR ; 67.326 0.0099332 1479650000 269790 528170 442300 262400 541150 450540 530350 698110 417910 298850 TRUE FALSE FALSE 329803.8547 589934.887 605925.1756 276734.2476 487271.2059 474129.5777 417036.3899 526897.4279 501780.7037 224352.1949 1.470027315 2.629503523 2.700776678 1.233481347 2.171903003 2.113327119 1.858846935 2.348528072 2.236575862 1 17.77540577 -10.26542431 3.915872156 0.998587538 2.098390478 0.353652274 0.439605572 23710618.97 12902877.1 280193.098 0.105267548 5.43E-11 10.26542431 1.099802939 S(ph)ATREPPYRVPR ddPTM_HeLa_A486_30min_R1 1 SATREPPYRVPR 12 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.983)AT(0.016)REPPYRVPR 51.03 0.03535 654350000 118420 121890 100810 41735 165650 87952 120800 132720 81647 116860 TRUE FALSE FALSE 110119.3695 112230.9925 139846.3318 97161.18917 144872.6324 77101.37647 90574.56231 102502.5533 88724.2277 87597.49537 1.257106371 1.281212345 1.596464958 1.109177708 1.653844459 0.880177865 1.033985754 1.170153928 1.012862609 1 16.418602 -6.275657714 24.99966729 1.03098001 1.371126265 0.550582715 0.162424442 637.799611 1121420.733 0.054594915 0.04836549 5.30E-07 6.275657714 0.340146255 S(ph)ATRPS(ph)PS(ph)PER ddPTM_HeLa_A485_30min_R1 4 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.968)AT(0.033)RPS(0.999)PS(1)PER;S(1)ATRPS(1)PS(1)PER;S(0.985)AT(0.015)RPS(1)PS(1)PER;S(0.999)AT(0.001)RPS(1)PS(1)PER ;;; 154.82 3.63E-06 1588850000 1365690 1581860 1364240 1611690 1918620 1497130 1893750 1997530 1331630 1909090 TRUE FALSE FALSE 1669483.029 1766844.767 1868929.147 1699732.544 1727595.456 1575517.412 1489134.842 1507632.635 1598875.927 1433188.997 1.164872904 1.232806538 1.304035372 1.185979342 1.205420541 1.099308894 1.039035916 1.051942653 1.115607174 1 20.45079744 -6.295670991 2.120321297 1.054991921 1.228094545 0.77450908 0.043087202 0.153810297 1.358116787 0.017507498 0.01573539 5.06E-07 6.295670991 0.173102624 S(ph)ATRPS(ph)PS(ph)PER ddPTM_HeLa_A486_30min_R1 3 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.97)AT(0.03)RPS(1)PS(1)PER;S(0.994)AT(0.016)RPS(0.989)PS(1)PER;S(0.997)AT(0.003)RPS(1)PS(1)PER ;; 170.22 3.37E-07 1512370000 1547590 1550350 1068190 570691 1590900 1529370 1568000 1535080 1203960 1754910 TRUE FALSE FALSE 1439111.933 1427494.62 1481821.775 1328597.489 1391354.487 1340691.879 1175669.815 1185575.795 1308320.222 1315469.113 1.093991427 1.085160119 1.126458812 1.009979995 1.057686929 1.01917397 0.893726659 0.901257036 0.994565519 1 20.32714594 -6.489986232 2.891206953 0.939549025 1.074915799 0.654761536 0.043031147 0.161389255 2.709234462 0.017671358 0.014288732 3.24E-07 6.489986232 0.135366774 S(ph)ATRPSPS(ph)PER ddPTM_HeLa_A486_30min_R1 1 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.948)AT(0.001)RPS(0.056)PS(0.996)PER 150.23 2.66E-06 31906000000 2182700 2300500 1674600 952410 2550100 2286500 2804900 2712700 1976200 2537700 TRUE FALSE FALSE 2029704.001 2118200.002 2323049.967 2217258.612 2230242.679 2004414.877 2103084.353 2095077.428 2147498.607 1902243.402 1.06700541 1.113527322 1.221215941 1.165601946 1.172427607 1.053711042 1.1055811 1.101371899 1.128929455 1 20.85927043 -6.255538542 24.96397105 1.085983343 1.151093328 0.322590966 0.04996469 654.9026484 2770618.366 0.017200188 0.016781427 5.55E-07 6.255538542 0.065109985 S(ph)ATTT(ph)PSGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.996)AT(0.004)T(0.029)T(0.971)PS(0.001)GS(1)PR;S(0.982)AT(0.018)T(0.027)T(0.973)PSGS(1)PR ; 177.93 9.57E-09 827510000 557320 1110860 814060 565190 732440 794000 727600 834790 786850 750820 TRUE FALSE FALSE 681293.9113 1240765.414 1115214.67 596064.8986 659515.7018 835572.6122 572142.3161 630056.4436 944763.5776 563654.3918 1.208708601 2.201287583 1.978543388 1.057500673 1.170071078 1.482420122 1.015058739 1.117806324 1.676139832 1 19.10445131 -5.260123634 24.99973273 1.222597767 1.83669065 0.422910884 0.308908127 105.2217596 1999238.667 0.083116941 0.134344041 5.49E-06 5.260123634 0.614092883 S(ph)ATTT(ph)PSGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.995)AT(0.005)T(0.013)T(0.987)PS(0.007)GS(0.993)PR;S(1)ATT(0.139)T(0.861)PSGS(1)PR ; 209.22 1.99E-14 1002660000 568640 831210 688150 256186 786560 728040 757260 708780 733380 743790 TRUE FALSE FALSE 528781.2725 765341.8924 954620.1093 596413.9549 687902.3104 638221.827 567785.5385 547406.2666 796949.9689 557540.1427 0.948418297 1.372711727 1.712199779 1.069723791 1.233816649 1.14471009 1.018376068 0.981823952 1.429403747 1 19.08871616 S(ph)AVEQLCLAESTRPR ddPTM_HeLa_A485_30min_R1 2 SAVEQLCLAESTRPR 15 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(1)AVEQLCLAESTRPR;S(1)AVEQLCLAESTRPR ; 227.06 3.65E-34 758810000 52897 61055 49221 70739 58230 54756 63512 78704 49880 67317 TRUE FALSE FALSE 64663.75516 68194.85114 67429.89616 74603.29245 52432.41674 57622.93949 49942.14235 59401.7206 59890.45847 50536.11078 1.279555434 1.349428163 1.334291364 1.476237314 1.037523781 1.140232966 0.988246653 1.175431185 1.185102248 1 15.62502702 -5.769821928 24.9999783 1.09417604 1.357304032 0.74395159 0.078148916 94.54742416 281976.0076 0.024074687 0.027744931 1.70E-06 5.769821928 0.263127992 S(ph)AVEQLCLAESTRPR ddPTM_HeLa_A486_30min_R1 2 SAVEQLCLAESTRPR 15 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(1)AVEQLCLAESTRPR;S(1)AVEQLCLAESTRPR ; 231.77 1.15E-34 634220000 54590 60451 46988 28080 56475 53943 60653 67120 54102 69336 TRUE FALSE FALSE 50763.5229 55660.6426 65183.01198 65371.65908 49391.37889 47288.06111 45476.97788 51838.24122 58791.60492 51973.8143 0.976713439 1.070936266 1.254151016 1.257780672 0.95031276 0.909843962 0.874997891 0.997391512 1.131177415 1 15.66549732 -5.783023086 24.99756562 0.968670148 1.143130832 0.38838962 0.099581124 254.771711 295067.1182 0.033795853 0.038354419 1.65E-06 5.783023086 0.174460684 S(ph)AVFPGEGK ddPTM_HeLa_A485_30min_R1 5 SAVFPGEGK 9 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK ;;;; 109.24 0.00097822 1270110000 2326970 2257210 1726600 2925810 2838570 2461850 3684180 3584290 2080180 3883350 TRUE FALSE FALSE 2844596.449 2521171.074 2365341.19 3085639.592 2555952.004 2590748.659 2897024.846 2705237.258 2497653.045 2915302.313 0.975746644 0.864806049 0.811353656 1.058428684 0.87673652 0.888672385 0.993730507 0.927943989 0.856738951 1 21.47521407 -10.65977506 2.924592304 1.008351507 0.917180704 0.111203475 0.070285712 89995148.13 83764744.48 5623652.529 0.01723144 2.19E-11 10.65977506 -0.091170802 S(ph)AVFPGEGK ddPTM_HeLa_A486_30min_R1 6 SAVFPGEGK 9 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK;S(1)AVFPGEGK ;;;;; 120.86 0.00042154 1328062000 3310200 3424880 1911280 1483360 3176220 3634810 4452730 4202620 2614060 4228070 TRUE FALSE FALSE 3078172.074 3153480.036 2651378.802 3453337.045 2777828.871 3186384.098 3338609.858 3245775.169 2840648.826 3169333.752 0.971236328 0.994997776 0.836572923 1.089609778 0.87647092 1.005379789 1.053410628 1.024119081 0.896292107 1 21.59574816 S(ph)AVKKAESER ddPTM_HeLa_A485_30min_R1 1 SAVKKAESER 10 2 Q5TZA2;Q5TZA2-2;B1AKD8 Q5TZA2 CROCC Rootletin 1 0 S(0.976)AVKKAES(0.024)ER 40.113 0.03414 447590000 152410 195890 145300 170540 281340 171940 259940 732830 236960 482510 TRUE FALSE FALSE 186313.0787 218797.6315 199052.5164 179856.1684 253328.8018 180942.5125 204401.6955 553102.2935 284515.6985 362229.1369 0.514351441 0.60403101 0.549520997 0.496525956 0.699360642 0.499525008 0.564288387 1.526940373 0.785457793 1 18.46654307 -7.227394975 24.35934103 1.117149255 0.562760412 0.657066268 0.179705762 231.4944877 165638.4156 0.076745814 0.044305463 5.92E-08 7.227394975 -0.554388844 S(ph)AVKKAESER ddPTM_HeLa_A486_30min_R1 2 SAVKKAESER 10 2 Q5TZA2;Q5TZA2-2;B1AKD8 Q5TZA2 CROCC Rootletin 1 0 S(0.976)AVKKAES(0.024)ER;S(0.985)AVKKAES(0.015)ER ; 42.976 0.030514 538480000 295900 390370 262190 147166 367440 362460 464140 375950 245500 262670 TRUE FALSE FALSE 275158.938 359435.6595 363716.9897 342609.8854 321352.249 317743.3704 348007.2628 290354.3919 266780.1377 196895.7223 1.397485607 1.825512791 1.847256941 1.740057536 1.632093604 1.613764721 1.767469901 1.474660742 1.3549311 1 17.58707224 -7.939848231 1.167021849 1.003076552 1.703139272 0.746968304 0.125818985 0.229412383 0.701605784 0.11930744 0.038101102 1.15E-08 7.939848231 0.700062721 S(ph)AVLLVDETATTPIFANR ddPTM_HeLa_A485_30min_R1 5 SAVLLVDETATTPIFANR 18 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(0.999)AVLLVDET(0.001)ATTPIFANR ;;;; 385.07 2.89E-145 1438490000 257618 265407 271518 329658 328873 224789 312043 267512 266388 386011 TRUE FALSE FALSE 314924.2353 296444.0399 371963.807 347666.3818 296129.2494 236558.6045 245372.4639 201904.2626 319849.6281 289785.5617 1.086749228 1.02297726 1.283582953 1.199736729 1.021890972 0.816322949 0.846738058 0.696736792 1.103745909 1 18.14462619 -6.02327981 3.973121416 0.87245494 1.147495907 0.494997899 0.120638322 0.17615654 6.198572253 0.040223509 0.042667183 9.48E-07 6.02327981 0.275040967 S(ph)AVLLVDETATTPIFANR ddPTM_HeLa_A486_30min_R1 5 SAVLLVDETATTPIFANR 18 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR ;;;; 290.5 1.72E-78 1850744000 241123 260106 192247 107658 250735 264469 279424 272583 242172 236541 TRUE FALSE FALSE 224221.5229 239494.2533 266690.187 250633.2647 219285.4783 231841.5037 209509.1598 210521.8013 263163.6639 177309.594 1.264576371 1.350712321 1.504093382 1.413534706 1.236737806 1.307551941 1.181600809 1.187311959 1.484204312 1 17.43591108 -5.765579383 24.9567431 1.24343424 1.389539727 0.251238598 0.126167023 151.3508816 912373.1012 0.037795776 0.044401493 1.72E-06 5.765579383 0.146105487 S(ph)AVLLVDETATTPIFANRR ddPTM_HeLa_A485_30min_R1 4 SAVLLVDETATTPIFANRR 19 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(1)AVLLVDETATTPIFANRR;S(1)AVLLVDETATTPIFANRR;S(1)AVLLVDETATTPIFANRR;S(1)AVLLVDETATTPIFANRR ;;; 233.87 3.44E-37 3203670000 241435 344720 269742 179786 375574 332622 433840 570650 257564 272622 TRUE FALSE FALSE 295141.3828 385032.0053 369530.7907 189607.2539 338180.5338 350037.5736 341146.5399 430697.1928 309254.7323 204662.3526 1.44208927 1.881303524 1.805563094 0.926439335 1.652382715 1.710317355 1.666874906 2.104428036 1.511048458 1 17.64288622 -5.968559021 24.99997627 1.672890477 1.526992452 0 0.351802017 828.6283838 658871.8482 0.109184279 0.123802312 1.08E-06 5.968559021 -0.145898024 S(ph)AVLLVDETATTPIFANRR ddPTM_HeLa_A486_30min_R1 4 SAVLLVDETATTPIFANRR 19 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;A0A087WX73 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(1)AVLLVDETATTPIFANRR;S(1)AVLLVDETATTPIFANRR;S(1)AVLLVDETATTPIFANRR;S(1)AVLLVDETATTPIFANRR ;;; 204.17 7.54E-26 2160080000 318620 319650 248146 135833 376592 263288 354783 374659 228745 334462 TRUE FALSE FALSE 296286.3834 294319.7699 344234.7768 316226.0886 329356.3198 230806.2035 266012.5409 289357.3244 248572.8008 250710.5382 1.181786715 1.173942555 1.373036727 1.261319492 1.313691567 0.920608304 1.061034541 1.15414903 0.991473284 1 17.93566311 -6.251066814 24.99950695 1.037311189 1.26220167 0.694691885 0.077794174 442.0098587 1065313.563 0.026847133 0.026566909 5.61E-07 6.251066814 0.224890481 S(ph)AVSDKQDR ddPTM_HeLa_A486_30min_R1 1 SAVSDKQDR 9 1 D6RJ96;E9PDE8;O95757 D6RJ96 HSPA4L Heat shock 70 kDa protein 4L 1 0 S(0.999)AVS(0.001)DKQDR 45.433 0.030713 473750000 70720 83779 65926 33330 104950 78261 110610 101250 66511 77391 TRUE FALSE FALSE 65762.8932 77140.04692 91454.31276 77593.9244 91786.19238 68605.95352 82934.20809 78197.58527 72276.22703 58011.78987 1.133612553 1.32973051 1.576478039 1.337554393 1.582198939 1.182620872 1.429609538 1.347960224 1.245888589 1 15.82405851 -8.146896069 1.73264783 1.000201535 1.37574588 0.399661494 0.136225629 0.581422166 3.499988393 0.128561367 0.03659731 7.13E-09 8.146896069 0.375544345 S(ph)CETSSQDLGFSYYPAENLIEYK ddPTM_HeLa_A485_30min_R1 2 SCETSSQDLGFSYYPAENLIEYK 23 0 S5FZ81;Q8WUB8-2;Q8WUB8;Q8WUB8-3 S5FZ81 PHF10 PHD finger protein 10 1 0 S(0.823)CET(0.166)S(0.006)S(0.006)QDLGFSYYPAENLIEYK;S(0.887)CET(0.112)SSQDLGFSYYPAENLIEYK ; 253.93 3.95E-61 100730000 180135 110799 95417 252279 142302 117793 183475 128073 124337 301730 TRUE FALSE FALSE 220205.4093 123755.9792 130715.7189 266060.363 128133.9132 123960.4593 144274.0674 96662.89594 149290.2954 226514.2639 0.972148091 0.546349608 0.577075 1.174585469 0.565677017 0.547252333 0.636931489 0.426740878 0.659076796 1 17.78924238 -4.246208702 23.70575152 0.666541503 0.972148551 0.13488752 0.217851778 2737.118726 4260037.96 0.054420055 1.160956954 5.67E-05 4.246208702 0.305607048 S(ph)CETSSQDLGFSYYPAENLIEYK ddPTM_HeLa_A486_30min_R1 2 SCETSSQDLGFSYYPAENLIEYK 23 0 S5FZ81;Q8WUB8-2;Q8WUB8;Q8WUB8-3 S5FZ81 PHF10 PHD finger protein 10 1 0 S(0.738)CET(0.214)S(0.032)S(0.017)QDLGFSYYPAENLIEYK;S(0.846)CET(0.119)S(0.025)S(0.01)QDLGFS(0.001)YYPAENLIEYK ; 144.22 1.58E-09 79853000 77651.8 90589 33832 38813.9 65318.9 88044.8 99689 91532 75348.9 118138 TRUE FALSE FALSE 72208.80981 83410.39772 46932.65645 90360.72075 57125.99449 77182.72775 74745.7578 70692.16173 81880.20332 88555.47585 0.81540762 0.941899944 0.529980286 1.020385469 0.645087093 0.871574874 0.844055741 0.798281089 0.924620443 1 16.4342939 -7.928645928 3.042454442 0.999418082 0.808003463 0.189891531 0.13140186 0.358751744 6.915638431 0.116251003 0.031250219 1.18E-08 7.928645928 -0.191414619 S(ph)CHDLDLLGQSPGWGQTQAVETNIVCK ddPTM_HeLa_A485_30min_R1 4 SCHDLDLLGQSPGWGQTQAVETNIVCK 27 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK ;;; 341.4 4.25E-127 3656220000 965899 1068886 925431 1083704 1160685 1317130 1522270 1514810 1006549 1688080 TRUE FALSE FALSE 1180759.9 1193882.92 1267786.437 1142904.005 1045123.126 1386092.89 1197024.579 1143300.472 1208554.152 1267272.723 0.931733067 0.94208839 1.00040537 0.901861127 0.824702613 1.093760534 0.944567461 0.902173977 0.953665403 1 20.2732956 -6.242163462 24.99788965 0.97057775 0.924818162 0.175626886 0.061879695 2015.848052 2614245.974 0.021458776 0.021424429 5.73E-07 6.242163462 -0.045759588 S(ph)CHDLDLLGQSPGWGQTQAVETNIVCK ddPTM_HeLa_A486_30min_R1 4 SCHDLDLLGQSPGWGQTQAVETNIVCK 27 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(0.999)CHDLDLLGQS(0.001)PGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK ;;; 371.43 8.10E-167 3573290000 1330080 1729780 1401220 596110 2168020 1640250 1842890 1759530 1735620 1987930 TRUE FALSE FALSE 1236848.261 1592705.933 1943809.91 1387774.206 1896086.716 1437892.632 1381779.43 1358923.429 1886064.939 1490139.389 0.830021856 1.068830168 1.304448379 0.931304961 1.272422385 0.964938342 0.927281998 0.911943835 1.26569699 1 20.50701586 S(ph)CKVPGLGKPLTLPPKPEK ddPTM_HeLa_A486_30min_R1 1 SCKVPGLGKPLTLPPKPEK 19 3 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)CKVPGLGKPLTLPPKPEK 91.722 0.00053702 203270000 75806 135580 41278 100020 95746 214970 287360 275240 98232 168940 TRUE FALSE FALSE 70492.39086 124836.147 57261.94706 232851.6147 83736.64388 188449.1871 215459.4886 212573.8604 106746.8289 126636.3244 0.556652218 0.985784668 0.452176319 1.838742682 0.661237163 1.488113209 1.701403524 1.678616791 0.842940044 1 16.95033176 -5.246936752 24.99627587 1.340105471 0.696962418 0.370104883 0.387608656 870.9725962 1501178.949 0.103132527 0.177612275 5.66E-06 5.246936752 -0.643143053 S(ph)CLWLR ddPTM_HeLa_A485_30min_R1 2 SCLWLR 6 0 Q99956 Q99956 DUSP9 Dual specificity protein phosphatase 9 1 0 S(1)CLWLR;S(1)CLWLR ; 107.66 0.0096598 988810000 655150 1016010 913750 641280 1173900 657910 805770 675030 914820 890210 TRUE FALSE FALSE 800885.8573 1134823.531 1251784.149 676311.5026 1057022.394 692357.1503 633610.657 509477.8341 1098415.983 668297.0301 1.198398049 1.69808256 1.873095484 1.011992381 1.581665557 1.036002135 0.948097371 0.762352384 1.643604465 1 19.35012994 -5.928008713 1.306721516 1.060333814 1.549988772 0.253334287 0.316793977 0.56069681 1.999548686 0.131842035 0.159546391 1.18E-06 5.928008713 0.489654957 S(ph)CLWLR ddPTM_HeLa_A486_30min_R1 3 SCLWLR 6 0 Q99956 Q99956 DUSP9 Dual specificity protein phosphatase 9 1 0 S(1)CLWLR;S(1)CLWLR;S(1)CLWLR ;; 94.407 0.012105 1683010000 1514310 1391790 871900 369249 1311180 936810 1045080 1298700 711520 1069770 TRUE FALSE FALSE 1408164.689 1281499.492 1209523.03 859630.3328 1146719.578 821235.907 783589.9303 1003014.36 773195.1265 801892.629 1.756051419 1.598093617 1.508335389 1.072001789 1.43001636 1.02412203 0.977175624 1.250808804 0.964212787 1 19.61304955 -4.538853616 0.544868592 1.038201621 2.138440943 0.774620564 0.13233791 1.433785538 0.40243168 0.077226121 0.96582125 2.89E-05 4.538853616 1.100239322 S(ph)CNCLLLK ddPTM_HeLa_A485_30min_R1 1 SCNCLLLK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 S(1)CNCLLLK 73.781 0.01392 42880000 88327 103190 88692 104680 172300 128370 125370 157820 107900 117500 TRUE FALSE FALSE 107975.0364 115257.1729 121502.8616 110398.4033 155145.207 135091.2547 98583.67532 119114.3975 129554.5403 88209.41243 1.224076133 1.306631228 1.377436469 1.251549016 1.758828256 1.531483444 1.117609477 1.350359267 1.468715602 1 16.42864499 -9.846554253 10.06734304 1 1.37805776 0.305125823 0.170341395 0 0 0.173270551 0.042024281 1.42E-10 9.846554253 0.37805776 S(ph)CNCLLLK ddPTM_HeLa_A486_30min_R1 2 SCNCLLLK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 S(1)CNCLLLK;S(1)CNCLLLK ; 116.55 0.00093129 138510000 289570 225496 162346 149308 274670 241530 230869 257150 254230 285010 TRUE FALSE FALSE 269272.6383 207626.8757 225210.719 347596.5696 240218.3274 211732.4843 173103.1343 198602.5585 276266.8611 213641.6409 1.260393981 0.971846475 1.054151794 1.627007582 1.124398438 0.991063743 0.810249976 0.929606034 1.293132088 1 17.70483334 -6.123294531 4.785810088 0.989975204 1.216041838 0.217228404 0.196715306 0.377174204 13.1132317 0.069328457 0.069739299 7.53E-07 6.123294531 0.226066635 S(ph)CPELTSGPR ddPTM_HeLa_A485_30min_R1 4 SCPELTSGPR 10 0 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(1)CPELTSGPR;S(1)CPELTSGPR;S(1)CPELTSGPR;S(1)CPELTSGPR ;;; 209.97 3.44E-14 3708490000 768840 1016370 924810 915440 1244970 950950 1292130 1351000 909800 1180410 TRUE FALSE FALSE 939865.8055 1135225.63 1266935.704 965448.1692 1121016.415 1000740.272 1016055.87 1019665.132 1092388.515 886155.5108 1.060610462 1.281068183 1.429699063 1.089479394 1.265033509 1.129305477 1.146588671 1.150661616 1.232727779 1 19.75720037 -6.077190699 1.363582771 1.140675949 1.242407771 0.128602716 0.111217467 0.919082374 3.498990049 0.048404696 0.051010281 8.37E-07 6.077190699 0.101731823 S(ph)CPELTSGPR ddPTM_HeLa_A486_30min_R1 4 SCPELTSGPR 10 0 Q13111;Q13111-2;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(1)CPELTSGPR;S(1)CPELTSGPR;S(1)CPELTSGPR;S(1)CPELTSGPR ;;; 251.87 3.23E-22 3551170000 962750 1101780 946210 386919 1208510 1010110 1087930 1164570 981000 1166480 TRUE FALSE FALSE 895266.1966 1014470.94 1312607.852 900766.9858 1056927.407 885492.8982 815718.407 899422.8334 1066033.87 874385.8155 1.023880055 1.160209741 1.501176974 1.030171087 1.208765499 1.012702725 0.932904437 1.028633834 1.219180196 1 19.73791047 -6.260360422 24.60028448 1.033862612 1.192453775 0.211549732 0.14054375 125.8425064 2869248.598 0.048909514 0.046264584 5.49E-07 6.260360422 0.158591163 S(ph)CSPSPVSPQVQPQAADTISDSVAVPASLLGMR ddPTM_HeLa_A486_30min_R1 1 SCSPSPVSPQVQPQAADTISDSVAVPASLLGMR 33 0 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.331)CS(0.331)PS(0.331)PVS(0.006)PQVQPQAADTISDSVAVPASLLGMR 73.797 0.00077539 45226000 23177 25589 23493 9027.3 30216 23145 28519 31182 26060 24356 TRUE FALSE FALSE 21552.41199 23561.23445 32590.11876 21016.01061 26426.02753 20289.60522 21383.24456 24082.5393 28318.90178 18257.09907 1.180494881 1.290524544 1.785065559 1.151114453 1.447438469 1.111326895 1.171229037 1.319078086 1.551117276 1 14.15616993 S(ph)CSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A485_30min_R1 2 SCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 35 0 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.541)CS(0.457)VT(0.001)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER;S(0.48)CS(0.48)VT(0.04)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER ; 176.95 2.16E-15 656650000 167416 235933 232279 115530 305248 202367 277770 270973 281042 279130 TRUE FALSE FALSE 204657.1116 263523.312 318208.668 121841.1114 274856.4373 212962.6232 218422.1703 204516.4469 337444.5515 209548.028 0.976659688 1.257579537 1.518547662 0.581447187 1.311663202 1.016295048 1.042348966 0.975988411 1.610344677 1 17.67692142 -10.77971115 5.738050118 0.992671343 1.13460274 0.021813833 0.282632419 0.026471798 0.001016275 0.273386854 0.063467786 1.66E-11 10.77971115 0.141931396 S(ph)CSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A486_30min_R1 1 SCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 35 0 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.51)CS(0.442)VT(0.047)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER 98.573 6.95E-05 143700000 49228 55988 52902 5205.6 63267 55838 52313 35746 62287 26458 TRUE FALSE FALSE 45777.37141 51551.30698 73387.07116 12118.89988 55331.46292 48949.27528 39223.73409 27607.41613 67686.08731 19832.74459 2.308171278 2.599302721 3.700298304 0.611055108 2.789904477 2.468103951 1.977725973 1.392011883 3.412845207 1 14.27559672 -10.95536894 2.790262527 5.98E-21 2.332842915 0.185240287 0.855042338 4144339.853 10050152.51 26991834.28 0.209830608 1.11E-11 10.95536894 2.332842915 S(ph)CSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEERK ddPTM_HeLa_A486_30min_R1 1 SCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEERK 36 1 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.5)CS(0.5)VT(0.001)DAVAEQGHLPPPSVAYVHTTPGLPSGWEERK 167.51 1.21E-14 76167000 52023 51932 40783 7089.1 77300 48292 65914 57966 44580 30566 TRUE FALSE FALSE 48376.45635 47816.71919 56575.26981 16503.78306 67604.31321 42334.22404 49421.62003 44768.40719 48444.23029 22912.07465 2.11139572 2.08696593 2.469233829 0.720309414 2.950597632 1.847681831 2.157012003 1.95392202 2.114353721 1 14.48382048 -10.11692544 3.938868291 0.999722918 2.041768791 0.258289604 0.53158049 58291209.23 109788791 259351.152 0.124533662 7.64E-11 10.11692544 1.042045873 S(ph)CTPSPDQISHR ddPTM_HeLa_A485_30min_R1 1 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.562)CT(0.436)PS(0.002)PDQISHR 101.53 0.00066747 783090000 437620 574790 636470 355080 816690 554070 538970 620740 575590 475650 TRUE FALSE FALSE 534967.0592 642006.6905 871926.7387 374477.1213 735377.476 583080.2484 423814.6565 468502.5417 691105.6334 357079.2087 1.498174764 1.797939154 2.441830041 1.048722838 2.059423954 1.632915707 1.186892561 1.312040943 1.935440699 1 18.44588461 -6.548299249 9.469044615 1.38760888 1.775947821 0.186539028 0.403314375 0.553002502 192.763246 0.149828782 0.116684996 2.83E-07 6.548299249 0.388338941 S(ph)DAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A485_30min_R1 1 SDAEEDGGTVSQEEEDRKPK 20 2 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 S(0.965)DAEEDGGT(0.345)VS(0.691)QEEEDRKPK 50.364 0.011598 0 668010 229670 87883 1359100 247860 281700 547290 583790 227850 2611500 TRUE FALSE FALSE 816606.5199 256527.9086 120394.5788 1433344.192 223182.1881 296449.3764 430357.0206 440614.5872 273577.405 1960501.111 0.416529486 0.130848132 0.061410105 0.731111135 0.113839358 0.151211022 0.219513786 0.2247459 0.139544631 1 20.90279103 -10.3458122 3.216944681 1.005941504 0.241145296 0.595134242 0.187256743 68140765.94 92248308.71 3839971.906 0.047010547 4.51E-11 10.3458122 -0.764796208 S(ph)DDELLDDFFHDQSTATSQAGTLSSIPTALTR ddPTM_HeLa_A486_30min_R1 1 SDDELLDDFFHDQSTATSQAGTLSSIPTALTR 32 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)DDELLDDFFHDQSTATSQAGTLSSIPTALTR 68.807 0.0012294 34605000 11168 14909 8236.5 4041.7 10740 11168 14228 11900 9987.4 15762 TRUE FALSE FALSE 10385.18087 13727.55654 11425.89338 9409.281856 9392.889053 9790.205708 10668.00391 9190.629775 10853.11587 11815.09261 0.878975833 1.161866182 0.967059147 0.796378172 0.794990726 0.828618618 0.902913271 0.777872005 0.918580686 1 13.52834332 -5.067436723 5.484881329 0.849597152 1.03081717 0.346545458 0.090582836 0.18463697 10.64630089 0.023090239 0.041602937 8.56E-06 5.067436723 0.181220018 S(ph)DDEQSSADKER ddPTM_HeLa_A485_30min_R1 3 SDDEQSSADKER 12 1 A6NGV6;P27540-3;P27540-4;P27540 A6NGV6 ARNT Aryl hydrocarbon receptor nuclear translocator 1 0 S(1)DDEQSSADKER;S(1)DDEQSSADKER;S(1)DDEQSSADKER ;; 144.46 9.94E-08 936140000 644118 485074 317817 1009230 594136 509973 803230 630255 404217 1199040 TRUE FALSE FALSE 787399.8269 541799.1847 435390.7338 1064361.679 534981.7337 536674.3977 631613.3487 475683.973 485339.6442 900141.3947 0.874751269 0.601904532 0.483691492 1.182438321 0.594330776 0.596211218 0.701682372 0.528454725 0.539181563 1 19.77979211 -9.920984792 4.453608848 1.000004689 0.676372125 0.191917847 0.19814805 263821815.7 709305152.6 22608.64798 0.049532085 1.20E-10 9.920984792 -0.323632565 S(ph)DDEQSSADKER ddPTM_HeLa_A486_30min_R1 3 SDDEQSSADKER 12 1 A6NGV6;P27540-3;P27540-4;P27540 A6NGV6 ARNT Aryl hydrocarbon receptor nuclear translocator 1 0 S(1)DDEQSSADKER;S(1)DDEQSSADKER;S(1)DDEQSSADKER ;; 170.09 7.24E-11 2331460000 1214790 1093590 449645 781620 834963 1519660 1777290 1435090 941209 2243810 TRUE FALSE FALSE 1129639.494 1006929.946 623759.5859 1819650.861 730234.1548 1332179.8 1332593.244 1108351.335 1022793.754 1681945.371 0.671626745 0.598669828 0.370856032 1.081872748 0.434160447 0.792047009 0.792292821 0.658969877 0.608101649 1 20.68169942 -14 0.215239615 2.592167002 0.626445955 0.216411522 0.188409059 233.9422904 2.337939342 161.7310889 0.369271542 1.00E-14 14 -1.965721048 S(ph)DDMFTFHGPGK ddPTM_HeLa_A485_30min_R1 1 SDDMFTFHGPGK 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(1)DDMFTFHGPGK 134.61 1.32E-05 65410000 57938 63897 47180 89553 82323 65374 98716 105540 57720 107950 TRUE FALSE FALSE 70826.10822 71369.19832 64633.84532 94445.05363 74126.63307 68796.88155 77624.52016 79656.14952 69303.87456 81040.05167 0.873964253 0.880665755 0.797554345 1.165412061 0.914691335 0.848924453 0.957853784 0.982923232 0.855180533 1 16.30634747 S(ph)DDMFTFHGPGK ddPTM_HeLa_A486_30min_R1 1 SDDMFTFHGPGK 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(1)DDMFTFHGPGK 151.56 8.11E-08 142020000 84622 89525 44718 37374 92955 111760 118050 113610 71102 120890 TRUE FALSE FALSE 78690.43479 82430.71296 62034.00719 87008.56078 81295.71713 97972.18749 88512.64139 87743.48309 77265.17861 90618.35714 0.868371898 0.909646959 0.684563362 0.960164844 0.897121949 1.081151663 0.976762813 0.968274926 0.85264378 1 16.46751572 -5.462136454 24.99949778 0.964152073 0.828509955 0.406899645 0.078083259 247.7814335 101978.0313 0.022023016 0.03266535 3.45E-06 5.462136454 -0.135642119 S(ph)DEDRYQNGAER ddPTM_HeLa_A485_30min_R1 4 SDEDRYQNGAER 12 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 S(1)DEDRYQNGAER;S(1)DEDRYQNGAER;S(1)DEDRYQNGAER;S(1)DEDRYQNGAER ;;; 172.91 4.80E-11 1298540000 484600 589510 534542 691270 670040 557930 752660 653820 562280 901320 TRUE FALSE FALSE 592397.5981 658448.0664 732291.3299 729032.3297 603328.4649 587142.3521 591848.0423 493469.6199 675124.4385 676637.5116 0.875502153 0.973117888 1.082250566 1.077434102 0.891656839 0.867735445 0.874689967 0.729296871 0.997763835 1 19.36802363 -5.871350624 7.344046566 0.876376322 1.00536536 0.248044037 0.089884961 0.280177918 17.14510926 0.028140396 0.032000201 1.34E-06 5.871350624 0.128989038 S(ph)DEDRYQNGAER ddPTM_HeLa_A486_30min_R1 3 SDEDRYQNGAER 12 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 S(1)DEDRYQNGAER;S(1)DEDRYQNGAER;S(1)DEDRYQNGAER ;; 189.59 1.78E-13 1639000000 673240 745050 545660 276170 697010 781200 841770 764660 654380 1015790 TRUE FALSE FALSE 626049.3526 686009.5246 756954.1653 642937.7169 609584.5064 684823.4867 631150.2427 590563.6104 711102.1853 761429.5723 0.822202572 0.900949411 0.994122362 0.844382383 0.800578975 0.899391765 0.828901668 0.775598469 0.933904081 1 19.53835108 -1.067240433 23.41212499 0.873445003 0.010051615 0 0.074834586 0 0 0.016948 0 0.08565635 1.067240433 -0.863393388 S(ph)DEEDFVKVEDLPLK ddPTM_HeLa_A485_30min_R1 2 SDEEDFVKVEDLPLK 15 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 S(1)DEEDFVKVEDLPLK;S(1)DEEDFVKVEDLPLK ; 156.92 8.12E-09 132479000 215354 164761 136894 409353 171162 166194 224200 177307 146844 449690 TRUE FALSE FALSE 263258.7543 184028.3657 187536.7872 431714.9179 154120.5103 174895.6609 176297.8385 133822.1802 176314.2439 337590.5589 0.779816696 0.545122963 0.555515497 1.278812178 0.456530866 0.518070355 0.522223841 0.3964038 0.522272437 1 18.36491503 -4.234707833 20.14275507 0.628512925 0.779819523 0.020546024 0.262946527 2473.917755 1863716.299 0.066439078 3.188764598 5.82E-05 4.234707833 0.151306598 S(ph)DEEDFVKVEDLPLK ddPTM_HeLa_A486_30min_R1 4 SDEEDFVKVEDLPLK 15 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 S(1)DEEDFVKVEDLPLK;S(1)DEEDFVKVEDLPLK;S(1)DEEDFVKVEDLPLK;S(1)DEEDFVKVEDLPLK ;;; 153.11 1.84E-08 204852000 741936 650491 209578 393835 336417 764122 841262 699399 445670 1542520 TRUE FALSE FALSE 689930.1178 598943.7241 290732.2143 916867.7833 294220.4429 669852.3967 630769.3496 540161.1155 484301.0344 1156262.952 0.596689634 0.517999581 0.251441261 0.792957849 0.254458073 0.579325313 0.545524138 0.467161137 0.418850257 1 20.1410381 -10.46800125 3.446349487 1.007472158 0.490649679 0.499616957 0.152633975 188134986 240626654.7 13358321.84 0.034816554 3.40E-11 10.46800125 -0.516822479 S(ph)DERPVHIK ddPTM_HeLa_A485_30min_R1 1 SDERPVHIK 9 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 S(1)DERPVHIK 89.43 0.0017755 606300000 410670 397200 319560 520020 430450 328170 493670 403010 293840 514690 TRUE FALSE FALSE 502022.1247 443649.0848 437778.542 548427.3758 387592.8866 345352.4738 388193.3716 304171.1656 352810.9927 386387.2552 1.299271956 1.148198029 1.133004612 1.419372323 1.003120267 0.893798823 1.004674369 0.787218423 0.913102045 1 18.55968798 -5.940334729 6.968090024 0.91555714 1.233640342 0.734541192 0.094022304 0.112653278 10.60434155 0.02914102 0.033044957 1.15E-06 5.940334729 0.318083201 S(ph)DERPVHIK ddPTM_HeLa_A486_30min_R1 1 SDERPVHIK 9 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 S(1)DERPVHIK 84.892 0.0023867 446000000 411800 545440 368420 155950 493140 499760 493380 494540 460720 493220 TRUE FALSE FALSE 382934.9465 502217.3479 511082.0906 363059.4813 431285.7829 438104.6924 369931.1056 381944.0377 500655.5806 369714.5017 1.035758524 1.358392342 1.382369608 0.981999569 1.166537371 1.184981088 1.000585868 1.033078324 1.35416809 1 18.49605211 -5.259161219 24.99753991 1.106218067 1.26879537 0.210506969 0.137758579 309.17969 3392515.004 0.037414579 0.061048771 5.51E-06 5.259161219 0.162577302 S(ph)DGAPASDSKPGSSEAAPSSK ddPTM_HeLa_A485_30min_R1 6 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 S(1)DGAPASDSKPGSSEAAPSSK;S(0.999)DGAPAS(0.001)DSKPGSSEAAPSSK;S(0.569)DGAPAS(0.416)DS(0.015)KPGSSEAAPSSK;S(0.852)DGAPAS(0.137)DS(0.011)KPGSSEAAPSSK;S(1)DGAPASDSKPGSSEAAPSSK;S(1)DGAPASDSKPGSSEAAPSSK ;;;;; 254.95 4.57E-59 7993840000 2846466 1482457 767172 3810480 1366944 1921830 3181764 2331705 1508449 6768300 TRUE FALSE FALSE 3479652.542 1655817.45 1050980.847 4018636.874 1230846.256 2022454.047 2501954.129 1759850.693 1811180.878 5081087.371 0.684824386 0.325878563 0.206841719 0.790900959 0.242240719 0.398035676 0.492405256 0.346353165 0.35645537 1 22.27670584 -10.23874871 3.514607104 1.001216505 0.421601867 0.488834357 0.175669612 151308368.8 238427036.7 2005373.439 0.043218046 5.77E-11 10.23874871 -0.579614638 S(ph)DGAPASDSKPGSSEAAPSSK ddPTM_HeLa_A486_30min_R1 4 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 S(0.98)DGAPAS(0.011)DS(0.009)KPGSSEAAPSSK;S(1)DGAPASDSKPGSSEAAPSSK;S(0.996)DGAPAS(0.004)DSKPGSSEAAPSSK;S(0.999)DGAPAS(0.001)DS(0.001)KPGSSEAAPSSK ;;; 253.77 4.91E-59 3226290000 1089282 1051603 429015 450988 816007 1513080 1422500 1131068 1096354 2317280 TRUE FALSE FALSE 1012928.957 968270.1484 595141.0974 1049922.856 713655.7931 1326411.573 1066575.454 873548.5074 1191386.847 1737018.005 0.583142462 0.557432419 0.342622296 0.604439823 0.41085112 0.763614176 0.614026712 0.502901239 0.68588054 1 20.72818128 -13.17719353 0.196487936 2.400099432 0.476113219 0.617192355 0.108493157 64.22277562 0.847823993 35.52139451 0.278286103 6.65E-14 13.17719353 -1.923986213 S(ph)DGIYIINLK ddPTM_HeLa_A485_30min_R1 1 SDGIYIINLK 10 0 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 1 0 S(1)DGIYIINLK 83.005 0.0057363 8239400 15330 17159 19290 31101 24941 14622 24054 21585 21982 29496 TRUE FALSE FALSE 18740.10561 19165.59579 26426.17372 32799.96888 22457.78647 15387.58531 18914.6664 16291.24491 26393.58577 22143.19003 0.846314627 0.865530023 1.193422162 1.481266648 1.014207367 0.69491276 0.854197899 0.73572258 1.19195047 1 14.43457546 -6.0071691 24.98440167 0.87385508 1.107126638 0.165994381 0.210334034 569.2739844 1983935.186 0.070855614 0.077271073 9.84E-07 6.0071691 0.233271558 S(ph)DGIYIINLK ddPTM_HeLa_A486_30min_R1 1 SDGIYIINLK 10 0 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 1 0 S(1)DGIYIINLK 97.456 0.0020971 11697000 17608 28103 19319 12114 27798 36195 37021 33285 23814 31520 TRUE FALSE FALSE 16373.77013 25876.01593 26799.83418 28202.00421 24311.31563 31729.6289 27757.95423 25706.73211 25878.21669 23627.18684 0.693005487 1.095179723 1.134279521 1.19362514 1.028955152 1.342928768 1.174831114 1.088014933 1.095272868 1 14.52816025 -4.252990837 3.436542843 1.142143415 0.631938844 0.674910772 0.090702495 0.178582138 3.562121278 0.022680072 0.241104775 5.58E-05 4.252990837 -0.510204571 S(ph)DHEEDNMEDGM ddPTM_HeLa_A485_30min_R1 1 SDHEEDNMEDGM 12 0 A0A1B0GWI0;A0A1B0GVV8;A0JP08;A0A1B0GV02;O60315-2;O60315 A0A1B0GWI0 ZEB2 Zinc finger E-box-binding homeobox 2 1 0 S(1)DHEEDNMEDGM 80.371 0.0059934 196990000 96530 136050 133640 119930 165980 124300 128390 166590 139460 144110 TRUE FALSE FALSE 118002.7655 151959.864 183078.9972 126481.4722 149454.4484 130808.1558 100958.4277 125733.5413 167448.3428 108186.0291 1.090739409 1.404616337 1.692260994 1.169110958 1.381457935 1.209103956 0.933192839 1.16219758 1.547781577 1 16.72315468 -6.34548049 4.806112693 1.161980329 1.359991363 0.149034708 0.212128424 0.442070352 17.92945773 0.077987458 0.068658994 4.51E-07 6.34548049 0.198011034 S(ph)DHEEDNMEDGM ddPTM_HeLa_A486_30min_R1 1 SDHEEDNMEDGM 12 0 A0A1B0GWI0;A0A1B0GVV8;A0JP08;A0A1B0GV02;O60315-2;O60315 A0A1B0GWI0 ZEB2 Zinc finger E-box-binding homeobox 2 1 0 S(1)DHEEDNMEDGM 77.696 0.0045889 0 105120 121170 114830 31835 152840 113060 120880 122800 109240 118630 TRUE FALSE FALSE 97751.63084 111568.0479 159295.2513 74113.48885 133669.382 99111.80671 90634.54546 94841.12071 118709.0112 88924.27585 1.099268225 1.254641062 1.791358431 0.833444952 1.503182126 1.114564114 1.019232876 1.066538016 1.33494493 1 16.4402897 -6.472246737 24.82529035 1.104462844 1.29714385 0.127180498 0.248075524 715.1208769 350629.6653 0.085256116 0.075187808 3.37E-07 6.472246737 0.192681006 S(ph)DIDVNAAAGAK ddPTM_HeLa_A486_30min_R1 2 SDIDVNAAAGAK 12 0 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(1)DIDVNAAAGAK;S(1)DIDVNAAAGAK ; 181.26 7.82E-13 368040000 282840 487540 216185 202974 362520 533940 580850 543170 329680 563700 TRUE FALSE FALSE 263014.3766 448905.5548 299897.6216 472533.7297 317049.3612 468067.9115 435515.1864 419502.0483 358256.9278 422545.8509 0.622451684 1.062383062 0.709739833 1.118301668 0.750331261 1.107732831 1.030693321 0.992796515 0.84785338 1 18.68874837 -4.249557767 24.38909869 0.955284093 0.622451399 0.354415952 0.135726859 1422.297584 2919442.401 0.031564811 0.494651377 5.63E-05 4.249557767 -0.332832694 S(ph)DIDVNAAASAK ddPTM_HeLa_A485_30min_R1 1 SDIDVNAAASAK 12 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(1)DIDVNAAASAK 63.185 0.023164 252200000 68861 53849 47068 131010 90714 69815 111790 107340 59523 181280 TRUE FALSE FALSE 84178.89188 60146.17213 64480.41186 138166.7446 81682.19564 73470.40545 87905.15326 81014.6967 71468.72012 136090.2322 0.618552048 0.441958039 0.473806318 1.01525835 0.60020616 0.539865384 0.645932863 0.595301333 0.525156868 1 17.054204 -10.49323968 3.13197924 1.010098936 0.608248251 0.383032409 0.149907732 80320886.16 96052767.48 7005398.398 0.040140183 3.21E-11 10.49323968 -0.401850685 S(ph)DIS(ph)PLTPR ddPTM_HeLa_A486_30min_R1 1 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)DIS(1)PLTPR 88.338 0.0022241 0 122860 161930 150670 45725 157560 108150 107950 103830 119930 151160 TRUE FALSE FALSE 114248.1484 149098.0771 209013.4591 106450.1108 137797.3556 94807.55259 80939.76822 80190.17559 130325.629 113308.5521 1.008292369 1.315858991 1.844639749 0.939471106 1.216124935 0.836720184 0.714330619 0.70771512 1.150183517 1 16.78989723 -5.848821876 1.67389407 0.861071462 1.356290835 0.358891514 0.256484229 0.37322176 2.160131158 0.095995312 0.119669157 1.42E-06 5.848821876 0.495219373 S(ph)DISPLT(ph)PR ddPTM_HeLa_A485_30min_R1 3 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)DISPLT(1)PR;S(1)DISPLT(1)PR;S(1)DISPLT(1)PR ;; 161.87 3.30E-05 1967200000 3702320 3990910 3032220 4007750 3275440 3222070 3930240 3402480 2700900 4720480 TRUE FALSE FALSE 4525888.311 4457612.208 4153964.359 4226683.234 2949325.693 3390772.603 3090512.117 2568016.445 3242945.856 3543751.21 1.277146177 1.257879559 1.172194128 1.192714438 0.832260934 0.956831448 0.872101887 0.724660478 0.915116684 1 21.75684589 -5.725155756 6.159937016 0.872573875 1.226739709 0.833126086 0.074817246 0.070559996 7.247639589 0.022804698 0.028965329 1.88E-06 5.725155756 0.354165834 S(ph)DISPLT(ph)PR ddPTM_HeLa_A486_30min_R1 2 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)DISPLT(1)PR;S(1)DISPLT(1)PR ; 190.37 3.97E-08 3009700000 3874700 3932100 1916700 1108750 2316190 3368760 3327990 3056290 2908680 4748900 TRUE FALSE FALSE 3603103.539 3620506.076 2658897.571 2581226.033 2025671.853 2953156.642 2495291.702 2360439.485 3160806.724 3559744.53 1.012180371 1.017069075 0.746934941 0.725115528 0.569049783 0.829597916 0.700974938 0.663092384 0.887930776 1 21.76334228 -4.762095845 22.18451444 0.744854161 1.014625128 0.419998438 0.115184751 3.180248104 107568.5583 0.028280576 0.065207139 1.73E-05 4.762095845 0.269770967 S(ph)DISPLTPR ddPTM_HeLa_A485_30min_R1 4 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(1)DISPLTPR;S(1)DISPLTPR;S(0.999)DIS(0.001)PLTPR;S(0.999)DIS(0.001)PLTPR ;;; 178.54 4.08E-08 1069640000 892190 1037950 848640 926260 913560 890970 1036330 995860 864110 1165860 TRUE FALSE FALSE 1090654.587 1159329.224 1162587.251 976859.2384 822602.7587 937619.8115 814909.6295 751623.7736 1037528.951 875232.5581 1.246131188 1.324595632 1.328318103 1.116113917 0.93986764 1.071280773 0.931077828 0.858770354 1.185432308 1 19.73930688 -5.454704034 3.320507779 0.991689273 1.301309742 0.711551107 0.085709798 0.127358448 2.73835634 0.024976233 0.037551799 3.51E-06 5.454704034 0.30962047 S(ph)DISPLTPR ddPTM_HeLa_A486_30min_R1 4 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.998)DIS(0.002)PLTPR;S(0.996)DIS(0.004)PLTPR;S(1)DISPLTPR;S(1)DISPLTPR ;;; 173.28 3.98E-06 1216940000 1346300 1338530 733030 329906 902750 1135340 1192920 1106850 1009760 1515320 TRUE FALSE FALSE 1251931.322 1232460.008 1016878.847 768037.8405 789518.6772 995273.2941 894438.7986 854844.4174 1097286.81 1135874.009 1.10217446 1.085032317 0.895239119 0.67616464 0.695075925 0.876218037 0.787445431 0.752587356 0.966028627 1 20.11537139 -4.849252557 3.579431826 0.805906722 1.098889792 0.525622497 0.100723504 0.158301882 3.911217106 0.026607495 0.064725532 1.41E-05 4.849252557 0.292983071 S(ph)DKLPEEMGLLQGSSGDKR ddPTM_HeLa_A485_30min_R1 1 SDKLPEEMGLLQGSSGDKR 19 2 P43121 P43121 MCAM Cell surface glycoprotein MUC18 1 0 S(1)DKLPEEMGLLQGSSGDKR 183.42 1.82E-18 151000000 134290 57740 27052 247710 44722 83691 125730 92757 50925 442430 TRUE FALSE FALSE 164162.3472 64492.19073 37059.66053 261241.7701 40269.32065 88072.93135 98866.75838 70008.20031 61145.18039 332140.3433 0.494255969 0.194171506 0.111578317 0.786540314 0.121241883 0.265167822 0.297665611 0.210778973 0.18409441 1 18.34143344 -10.35405954 3.104209517 1.006973144 0.29363614 0.542689779 0.193817511 38972814.44 50556795.98 2469368.568 0.04787872 4.43E-11 10.35405954 -0.713337004 S(ph)DKLPEEMGLLQGSSGDKR ddPTM_HeLa_A486_30min_R1 1 SDKLPEEMGLLQGSSGDKR 19 2 P43121 P43121 MCAM Cell surface glycoprotein MUC18 1 0 S(1)DKLPEEMGLLQGSSGDKR 129.23 1.89E-06 196050000 87601 72709 18040 49141 65898 109520 122820 98453 79772 254170 TRUE FALSE FALSE 81460.62227 66947.27404 25025.57113 114402.7314 57632.45837 96008.53592 92089.13694 76037.40111 86686.70119 190524.1776 0.427560551 0.351384663 0.131351157 0.600463064 0.302494198 0.50391786 0.483346198 0.399095811 0.454990554 1 17.53961456 -14 0.233663441 4.289147768 0.339679361 0.707789909 0.116304042 87.42930107 0.874723946 136.0786761 0.191487941 1.00E-14 14 -3.949468408 S(ph)DLEEDNER ddPTM_HeLa_A486_30min_R1 1 SDLEEDNER 9 0 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 0 S(1)DLEEDNER 174.57 2.07E-09 0 184130 141790 69899 31402 57137 104090 96840 88121 117470 192810 TRUE FALSE FALSE 171223.4378 130554.044 96965.76476 73105.44297 49970.34468 91248.43411 72609.60773 68057.77197 127652.3942 144529.121 1.184698534 0.903306151 0.670908147 0.505818083 0.345745856 0.631349817 0.502387389 0.470893142 0.883229575 1 17.14100068 -4.539194171 1.939661518 0.582313105 1.216263023 0.468299413 0.187212054 0.359440395 2.140930997 0.049818669 0.335379835 2.89E-05 4.539194171 0.633949918 S(ph)DPLLIGIPTSENPFK ddPTM_HeLa_A485_30min_R1 2 SDPLLIGIPTSENPFK 16 0 Q9UBI6 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 1 0 S(1)DPLLIGIPTSENPFK;S(1)DPLLIGIPTSENPFK ; 173.36 2.29E-12 40914000 74037.9 54289.3 26902.7 84799.3 31501.2 51992 68333 52416.8 40761.5 162383 TRUE FALSE FALSE 90507.37543 60637.96138 36855.12824 89431.67104 28364.82992 54714.22073 53733.09632 39561.49761 48941.95916 121903.9065 0.742448524 0.497424267 0.302329345 0.733624324 0.232681878 0.448830741 0.440782399 0.324530187 0.401479826 1 16.89538483 -9.968278858 4.555997307 1.000009666 0.451546989 0.508214825 0.159758297 415570703 1010901593 73866.6586 0.038826196 1.08E-10 9.968278858 -0.548462677 S(ph)DPLLIGIPTSENPFK ddPTM_HeLa_A486_30min_R1 2 SDPLLIGIPTSENPFK 16 0 Q9UBI6 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 1 0 S(1)DPLLIGIPTSENPFK;S(1)DPLLIGIPTSENPFK ; 182.1 3.85E-13 17912000 107391 123816 55331 32990 95757 139819 117711 110354 125296 187507 TRUE FALSE FALSE 99863.44547 114004.3692 76756.64502 76802.38722 83746.26416 122569.5534 88258.46278 85228.80321 136156.7582 140554.0267 0.710498644 0.811107102 0.546100648 0.54642609 0.595829704 0.872045833 0.627932652 0.606377527 0.968714745 1 17.10076526 -7.769891546 24.32056783 0.98435785 0.664946552 0.610144583 0.102257691 101.5104802 292073.8683 0.098045647 0.027033106 1.70E-08 7.769891546 -0.319411298 S(ph)DQDS(ph)DSDQPSR ddPTM_HeLa_A485_30min_R1 1 SDQDSDSDQPSR 12 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 S(0.999)DQDS(0.893)DS(0.108)DQPSR 182.57 1.49E-12 262110000 230620 248130 192710 328320 254160 251710 334780 298090 238000 389110 TRUE FALSE FALSE 281920.6234 277146.6451 264001.4483 346255.2902 228854.938 264889.1464 263251.5181 224982.9601 285764.4169 292112.038 0.965111281 0.948768311 0.903767781 1.185350979 0.783449185 0.906806677 0.901200512 0.770194072 0.978269909 1 18.15616229 -5.811803927 24.99999896 0.87989829 0.990114272 0.230914535 0.097223884 155.0133749 76944.7386 0.02906503 0.032956698 1.54E-06 5.811803927 0.110215983 S(ph)DSDLLTCSPTEDATMGSR ddPTM_HeLa_A485_30min_R1 2 SDSDLLTCSPTEDATMGSR 19 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.961)DS(0.039)DLLTCSPTEDATMGSR;S(0.999)DS(0.001)DLLTCSPTEDATMGSR ; 254.59 6.01E-58 259016000 54928 48859 39594 88163 47097 47378 74102 74589 47775 95366 TRUE FALSE FALSE 67146.5441 54572.63503 54241.46824 92979.12145 42407.85731 49858.63882 58269.50234 56295.9308 57363.00428 71593.01128 0.937892441 0.762262043 0.757636357 1.298717847 0.592346328 0.69641768 0.813899308 0.786332769 0.801237485 1 16.12753114 S(ph)DSDLLTCSPTEDATMGSR ddPTM_HeLa_A486_30min_R1 1 SDSDLLTCSPTEDATMGSR 19 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(1)DSDLLTCSPTEDATMGSR 250.41 7.92E-47 0 23732 33638 23322 13472 27831 35592 35070 39805 30922 37353 TRUE FALSE FALSE 22068.50935 30972.40237 32352.90298 31363.49684 24340.17647 31201.02091 26295.11507 30742.27044 33602.34386 27999.56567 0.788173274 1.106174386 1.155478744 1.120142262 0.869305501 1.114339461 0.93912582 1.097955261 1.200102325 1 14.77311683 -7.497437234 23.65254606 1.116377038 1.02431212 0.087020629 0.12198086 864.4097672 803633.5759 0.06628809 0.031591802 3.18E-08 7.497437234 -0.092064917 S(ph)DSEATISR ddPTM_HeLa_A485_30min_R1 5 SDSEATISR 9 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.709)DS(0.291)EATISR;S(0.994)DS(0.006)EATISR;S(0.999)DS(0.001)EATISR;S(0.984)DS(0.016)EATISR;S(0.979)DS(0.021)EATISR ;;;; 228.54 1.94E-12 10877050000 2574710 2733770 2491690 2678760 3498670 2739410 3727850 3591880 2401020 3553120 TRUE FALSE FALSE 3147445.357 3053460.621 3413469.819 2825093.876 3150330.13 2882841.272 2931364.394 2710965.798 2882882.691 2667392.574 1.179970803 1.144736118 1.279702827 1.059121894 1.181052298 1.080771274 1.098962493 1.016335512 1.080786802 1 21.34699874 -6.519432714 0.514528253 1.01060545 1.198612725 0.556364867 0.053779996 0.706698186 0.400142725 0.047814401 0.049608487 3.02E-07 6.519432714 0.188007275 S(ph)DSEATISR ddPTM_HeLa_A486_30min_R1 4 SDSEATISR 9 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.967)DS(0.033)EATISR;S(0.999)DS(0.001)EATISR;S(0.855)DS(0.145)EATISR;S(0.71)DS(0.29)EATISR ;;; 175.66 2.16E-06 12130620000 2231010 2384280 1872000 872100 2719220 2389610 2760340 2920600 2137340 2828040 TRUE FALSE FALSE 2074627.72 2195340.969 2596888.534 2030292.873 2378150.072 2094804.214 2069673.736 2255643.136 2322606.352 2119880.377 0.978653203 1.035596628 1.225016545 0.957739359 1.121832203 0.988170954 0.976316286 1.064042651 1.095630856 1 21.01555143 -6.2800054 24.44284681 1.025802582 1.065270364 0.059612863 0.077157738 2116.090001 2785900.948 0.027326938 0.024146454 5.25E-07 6.2800054 0.039467781 S(ph)DSELEVKPAESLLR ddPTM_HeLa_A485_30min_R1 1 SDSELEVKPAESLLR 15 1 Q92539 Q92539 LPIN2 Phosphatidate phosphatase LPIN2 1 0 S(0.994)DS(0.006)ELEVKPAESLLR 73.208 0.0010321 0 39428 30611 26206 49091 42185 31279 47415 39500 30407 58864 TRUE FALSE FALSE 48198.62258 34190.69017 35900.68992 51772.71703 37984.91328 32916.72007 37284.39791 29812.56307 36509.40599 44190.28811 1.090706231 0.773715032 0.812411312 1.171585867 0.859576049 0.744885844 0.843723802 0.674640613 0.826186195 1 15.43144172 -5.993350368 24.99974964 0.799507516 0.947658967 0.196436493 0.134385094 269.4311302 1012935.775 0.04139282 0.046825844 1.02E-06 5.993350368 0.148151451 S(ph)DSELEVKPAESLLR ddPTM_HeLa_A486_30min_R1 3 SDSELEVKPAESLLR 15 1 Q92539 Q92539 LPIN2 Phosphatidate phosphatase LPIN2 1 0 S(0.998)DS(0.002)ELEVKPAESLLR;S(0.998)DS(0.002)ELEVKPAESLLR;S(0.997)DS(0.003)ELEVKPAESLLR ;; 157.79 5.76E-09 1040750000 560050 546720 237947 295277 436590 637560 730760 634610 447690 942840 TRUE FALSE FALSE 520793.3871 503395.9161 330086.4508 687419.7785 381828.8112 558904.3294 547916.1188 490123.1564 486496.1297 706746.7271 0.73688829 0.712272016 0.467050555 0.972653642 0.540262581 0.790812759 0.775265166 0.693491937 0.688359933 1 19.43083377 -14 0.346351356 4.275533857 0.698984228 0.309946646 0.130158272 502.2886861 4.174008764 1219.740728 0.096973989 1.00E-14 14 -3.576549629 S(ph)DSELVSK ddPTM_HeLa_A485_30min_R1 2 SDSELVSK 8 0 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 S(0.995)DS(0.005)ELVSK;S(0.99)DS(0.01)ELVSK ; 191.4 4.21E-06 558850000 731340 680160 378650 776970 471510 577790 794920 669770 423080 904940 TRUE FALSE FALSE 894024.0599 759698.7954 518728.3919 819413.9037 424564.8088 608042.191 625078.8481 505507.8573 507988.2753 679355.1122 1.315989302 1.118264633 0.763560004 1.20616433 0.624952696 0.895028506 0.920106196 0.744099585 0.747750721 1 19.37380637 -1.934611581 0.624534805 0.83219092 11.0534891 0.456555686 0.157302568 45.92981855 1.138480446 0.06550623 593.598684 0.011624878 1.934611581 10.22129818 S(ph)DSELVSK ddPTM_HeLa_A486_30min_R1 2 SDSELVSK 8 0 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 S(0.996)DS(0.004)ELVSK;S(0.983)DS(0.017)ELVSK ; 188.38 5.23E-06 595770000 976160 907370 337640 248080 483030 752910 784590 724740 617190 1258630 TRUE FALSE FALSE 907736.2249 835466.6966 468383.2503 577542.7773 422443.8733 660023.6192 588277.2835 559732.523 670688.5261 943460.8557 0.962134485 0.885534033 0.496452235 0.612153407 0.447759831 0.69957711 0.623531204 0.593275831 0.710881137 1 19.84760314 -8.038140514 19.16301572 1.000000006 0.657200512 0.307263028 0.149623307 337.5401587 169592.7755 0.154061614 0.039778527 9.16E-09 8.038140514 -0.342799495 S(ph)DSLLSFR ddPTM_HeLa_A485_30min_R1 4 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.952)DS(0.048)LLSFR;S(0.999)DS(0.001)LLSFR;S(0.986)DS(0.014)LLSFR;S(0.98)DS(0.02)LLSFR ;;; 185.6 6.82E-13 324173000 259921 245168 248438 297060 334100 232598 291829 271760 258976 393006 TRUE FALSE FALSE 317739.5297 273838.2649 340345.5546 313287.6356 300835.8309 244776.4716 229477.3501 205110.4339 310950.1077 295036.8369 1.076948672 0.928149406 1.153569697 1.06185939 1.019655152 0.829647152 0.777792199 0.695202796 1.053936556 1 18.17053557 -6.200029702 4.564822795 0.846147737 1.051054815 0.383544552 0.11015217 0.207921178 8.876119279 0.036810391 0.036313903 6.31E-07 6.200029702 0.204907077 S(ph)DSLLSFR ddPTM_HeLa_A486_30min_R1 4 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(1)DSLLSFR;S(0.983)DS(0.017)LLSFR;S(0.998)DS(0.002)LLSFR;S(0.999)DS(0.001)LLSFR ;;; 185.27 6.28E-06 463240000 312122 327629 267391 143665 379390 333303 359665 371338 294857 341736 TRUE FALSE FALSE 290243.8596 301666.4848 370931.9562 334459.3804 331803.3685 292183.4646 269673.0129 286792.4437 320415.4422 256163.0813 1.133043287 1.177634511 1.448030506 1.305650208 1.295281767 1.140615046 1.052739573 1.119569777 1.250826 1 17.96670304 -6.323651323 4.902939807 1.114068714 1.278427221 0.396102366 0.098426473 0.244830306 12.04645009 0.037052796 0.03284639 4.75E-07 6.323651323 0.164358507 S(ph)DSPEIPFQAAAGPSDGLDAS(ph)SPGNSFVGLR ddPTM_HeLa_A485_30min_R1 1 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.5)DS(0.5)PEIPFQAAAGPS(0.018)DGLDAS(0.482)S(0.482)PGNS(0.018)FVGLR 76.162 0.0012043 34813000 18795 19918 23944 27576 31011 22717 37566 34083 22950 40071 TRUE FALSE FALSE 22975.88291 22247.23684 32801.88199 29082.40705 27923.43595 23906.42699 29539.71721 25724.09081 27555.85449 30082.03715 0.763774168 0.739552203 1.09041425 0.966769867 0.928242852 0.794707715 0.981971968 0.855131276 0.916023551 1 14.87661465 -4.723210895 24.98380143 0.933093211 0.751662672 0.493880316 0.076541876 141.5414787 92500.94038 0.019887032 0.052613873 1.89E-05 4.723210895 -0.181430539 S(ph)DSPEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_A485_30min_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.544)DS(0.456)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.509)DS(0.491)PEIPFQAAAGPSDGLDASSPGNSFVGLR ; 149.84 9.05E-10 292360000 183270 185285 171660 266540 259980 224910 350210 312710 189042 341730 TRUE FALSE FALSE 224037.7792 206952.469 235164.1774 281100.4053 234095.4784 236685.9398 275384.7725 236017.3822 226980.9954 256543.0001 0.873295234 0.806697002 0.916665734 1.095724324 0.912499964 0.922597536 1.07344489 0.919991511 0.884767838 1 17.96884114 -4.983194283 8.207024139 0.971827013 0.844758602 0.383661673 0.067043558 0.180224738 65.78970784 0.017770546 0.036279054 1.04E-05 4.983194283 -0.127068411 S(ph)DSPEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_A486_30min_R1 1 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.534)DS(0.466)PEIPFQAAAGPSDGLDASSPGNSFVGLR 128.43 1.98E-06 261220000 103950 138860 95767 51370 148240 154640 174270 171160 128230 155220 TRUE FALSE FALSE 96663.6418 127856.2279 132850.5471 119591.9561 129646.3569 135562.0891 130665.8028 132190.6044 139345.0796 116351.9017 0.830786952 1.098875274 1.141799534 1.027847026 1.114260747 1.165104198 1.123022494 1.136127579 1.197617552 1 16.82813527 -4.262577722 4.662702314 1.117513517 0.813719657 0.692623595 0.056138102 0.098911416 5.883734919 0.013707838 0.098222755 5.46E-05 4.262577722 -0.30379386 S(ph)DSYTLDPDTLR ddPTM_HeLa_A486_30min_R1 1 SDSYTLDPDTLR 12 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.994)DS(0.003)YT(0.004)LDPDTLR 78.324 0.0044228 0 133190 167740 100570 104800 136520 178790 212820 207520 137600 274930 TRUE FALSE FALSE 123854.0688 154447.6715 139513.3974 243979.6963 119396.3886 156732.7076 159570.185 160272.2261 149527.2788 206085.7385 0.600983211 0.749434059 0.676967743 1.183874722 0.579352989 0.760521852 0.774290284 0.777696833 0.725558595 1 17.65288515 -11.42154822 2.051967954 2.727271247 0.76435821 0.174443121 0.157025144 10799105.89 866728.9298 86689070.95 0.041617718 3.79E-12 11.42154822 -1.962913038 S(ph)DT(ph)S(ph)SPEVR ddPTM_HeLa_A486_30min_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)DT(0.577)S(0.853)S(0.569)PEVR 84.687 0.0015667 0 260250 273240 177010 119540 251320 271610 271650 263180 248320 367940 TRUE FALSE FALSE 242007.8189 251587.4673 245553.0125 278295.1612 219797.1021 238101.5197 203680.2968 203259.6592 269844.5775 275805.4291 0.877458503 0.91219186 0.890312469 1.009027132 0.79692812 0.86329526 0.738492703 0.736967578 0.978387476 1 18.07329133 -5.786523425 24.9946473 0.834048446 0.919248245 0.108138039 0.089362352 397.5078662 396088.9905 0.027113021 0.030755579 1.63E-06 5.786523425 0.085199799 S(ph)DTS(ph)S(ph)PEVR ddPTM_HeLa_A486_30min_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)DT(0.345)S(0.744)S(0.911)PEVR 71.153 0.011556 101950000 177790 194400 124860 85532 162250 178490 170890 168120 166040 251350 TRUE FALSE FALSE 165327.8391 178995.036 173209.1359 199122.8185 141899.0921 156469.7186 128131.5145 129842.746 180432.4809 188410.324 0.877488216 0.950027749 0.919318709 1.056857259 0.753138624 0.830473168 0.680066314 0.689148786 0.957657081 1 17.52351849 -5.777266019 24.99995562 0.796556994 0.948601611 0.257609433 0.106358042 282.5897954 446380.6655 0.032213022 0.036645393 1.67E-06 5.777266019 0.152044616 S(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_A485_30min_R1 2 SEAEDEDDEDYVPYVPLR 18 0 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 S(1)EAEDEDDEDYVPYVPLR;S(1)EAEDEDDEDYVPYVPLR ; 200.58 3.49E-25 1518750000 510030 580600 526700 640420 724580 582990 783020 793720 501950 771770 TRUE FALSE FALSE 623484.4139 648496.1195 721548.2478 675404.523 652438.271 613514.4549 615721.3803 599058.9255 602686.7608 579381.9424 1.076119859 1.119289491 1.245375796 1.165732781 1.126093555 1.058911937 1.06272104 1.033962023 1.040223584 1 19.1441552 -6.269084623 2.039799107 1.03694248 1.155903722 0.624641463 0.042259727 0.239899274 1.960892004 0.018306939 0.016728045 5.38E-07 6.269084623 0.118961242 S(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_A486_30min_R1 1 SEAEDEDDEDYVPYVPLR 18 0 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 S(1)EAEDEDDEDYVPYVPLR 285.94 1.15E-69 686530000 332710 405200 224170 190740 266740 415270 369610 311790 285950 443820 TRUE FALSE FALSE 309388.7471 373090.4763 310974.6275 444052.3595 233282.9819 364038.2096 277129.6687 240802.2233 310736.3762 332684.5832 0.929976208 1.121454059 0.934743127 1.334754845 0.701213683 1.094244302 0.833010252 0.723815396 0.934026979 1 18.34379549 -5.778037883 24.99999935 0.875500147 1.072784544 0.289737882 0.152450348 308.4866457 464628.3984 0.045407459 0.051626471 1.67E-06 5.778037883 0.197284398 S(ph)EAEEGEVR ddPTM_HeLa_A485_30min_R1 1 SEAEEGEVR 9 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 S(1)EAEEGEVR 133.89 0.00020414 1712600000 140450 164980 115610 125280 117640 134340 129610 147220 121210 162030 TRUE FALSE FALSE 171692.618 184272.9759 158378.9499 132123.7292 105927.3485 141373.8347 101917.7647 111114.0642 145535.7352 121638.9029 1.411494298 1.514918101 1.302041913 1.086196324 0.870834462 1.162241941 0.837871456 0.913474731 1.19645715 1 16.89224518 -5.18123685 2.335086057 0.991899405 1.461214124 0.739001181 0.112005373 0.14337817 1.523912227 0.032195414 0.065205182 6.59E-06 5.18123685 0.469314719 S(ph)EALSS(ph)VLDQEEAMEIK ddPTM_HeLa_A486_30min_R1 1 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.796)EALS(0.35)S(0.855)VLDQEEAMEIK 72.446 0.0015026 0 2497.4 2456.2 1061 816.67 2426.3 2927.9 3159.1 4712.6 1842.2 3423.6 TRUE FALSE FALSE 2322.345157 2261.561767 1471.847615 1901.249032 2121.97083 2566.685467 2368.659766 3639.643855 2001.883379 2566.308276 0.90493616 0.881251012 0.573527206 0.740849823 0.826857338 1.000146978 0.922983333 1.418241093 0.780063486 1 11.32547877 -6.350849348 1.868924068 1.065993063 0.768411637 0.321599593 0.172950274 0.381144708 2.626921054 0.072671986 0.062421436 4.46E-07 6.350849348 -0.297581425 S(ph)EALSSVLDQEEAMEIK ddPTM_HeLa_A486_30min_R1 1 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.984)EALS(0.016)SVLDQEEAMEIK 141 6.58E-08 0 18298 19849 7925.6 9548.9 16424 20199 27451 22827 13234 31206 TRUE FALSE FALSE 17015.40469 18276.09295 10994.60457 22230.32177 14363.94877 17707.05275 20582.46945 17629.79041 14381.13378 23391.81448 0.7274085 0.78130292 0.470019313 0.95034619 0.614058768 0.756976453 0.879900508 0.753673488 0.614793426 1 14.51371615 -11.36360044 2.251465736 2.772374439 0.730932835 0.282556802 0.130116237 5963028.317 639666.0555 53966378.32 0.032210975 4.33E-12 11.36360044 -2.041441604 S(ph)EANDAVNSSTK ddPTM_HeLa_A485_30min_R1 1 SEANDAVNSSTK 12 0 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 0 S(1)EANDAVNSSTK 152.34 2.04E-06 0 169450 132210 67599 161520 107640 127750 154170 138910 90913 185120 TRUE FALSE FALSE 207143.5679 147670.8094 92606.68313 170343.4286 96922.98365 134438.7925 121230.32 104842.1047 109158.4052 138972.9909 1.490531121 1.062586395 0.666364612 1.225730464 0.697423169 0.967373528 0.872330079 0.754406335 0.785464891 1 17.084445 -4.348115865 3.174141483 0.87150865 1.528825919 0.584003125 0.15788597 0.187073158 3.02375146 0.03809023 0.266857668 4.49E-05 4.348115865 0.657317269 S(ph)EDARS(ph)S(ph)PSQR ddPTM_HeLa_A485_30min_R1 1 SEDARSSPSQR 11 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 3 0 S(1)EDARS(0.993)S(0.92)PS(0.087)QR 103.92 0.0081107 120170000 168840 200540 101360 315510 113760 197080 216420 267970 163060 310350 TRUE FALSE FALSE 206397.8755 223991.4085 138857.2819 332745.5124 102433.655 207398.8041 170180.099 202249.9373 195784.6463 232985.4566 0.885883087 0.961396526 0.5959912 1.428181472 0.439656863 0.890179186 0.730432283 0.868079666 0.840329904 1 17.82988038 S(ph)EDARS(ph)SPSQR ddPTM_HeLa_A485_30min_R1 1 SEDARSSPSQR 11 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 2 0 S(0.999)EDARS(0.531)S(0.462)PS(0.008)QR 59.862 0.033278 228420000 172570 238140 129990 253780 177530 241200 289730 364900 195060 314040 TRUE FALSE FALSE 210957.6011 265988.4015 178078.7103 267643.3588 159854.4899 253828.859 227826.8186 275407.7029 234206.7528 235755.6075 0.894814776 1.128237857 0.755353021 1.135257658 0.678051698 1.076660962 0.96636861 1.168191526 0.993430253 1 17.84693256 S(ph)EDEDS(ph)LEEAGSPAPGPCPR ddPTM_HeLa_A485_30min_R1 5 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 2 0 S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR ;;;; 261.63 1.80E-58 938200000 756523 593271 630951 951944 850834 709687 1087275 1000915 670744 1350534 TRUE FALSE FALSE 924808.9314 662648.8827 864366.031 1003946.29 766121.9795 746845.1139 854969.814 755439.0269 805356.1684 1013870.729 0.912156654 0.653583207 0.852540671 0.990211338 0.755640693 0.736627553 0.843273003 0.745103893 0.79433812 1 19.95144229 -9.987426844 4.278402286 1.000008584 0.806688405 0.282136571 0.09118435 11399457.98 6652673.492 870.7432628 0.02211975 1.03E-10 9.987426844 -0.193320179 S(ph)EDEDS(ph)LEEAGSPAPGPCPR ddPTM_HeLa_A486_30min_R1 4 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 2 0 S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR;S(1)EDEDS(1)LEEAGSPAPGPCPR ;;; 352.41 2.01E-127 1154060000 1338860 1556670 927700 624682 1238820 1576450 1835070 1804330 1307080 1991780 TRUE FALSE FALSE 1245012.828 1433313.8 1286930.285 1454291.266 1083435.644 1381963.627 1375916.077 1393523.447 1420378.747 1493025.324 0.833885942 0.960006356 0.861961458 0.974056664 0.725664613 0.925612985 0.921562451 0.933355533 0.951342703 1 20.50980721 -7.578784802 0.994014915 0.993547379 0.881906371 0.257984095 0.066390058 0.747195965 1.415265723 0.060460282 0.021895681 2.64E-08 7.578784802 -0.111641008 S(ph)EDES(ph)ET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_A486_30min_R1 1 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 3 0 S(1)EDES(1)ET(0.999)EDEEEKS(0.001)QEDQEQKR 94.838 8.45E-07 0 213470 209530 42084 295950 133720 271250 418330 300950 150800 795620 TRUE FALSE FALSE 198506.8554 192926.0797 58380.05185 688986.5565 116947.5907 237785.9329 313659.4094 232430.2547 163871.4654 596391.5734 0.332846513 0.323488943 0.097888794 1.155258705 0.196091957 0.398707734 0.52592864 0.389727597 0.274771598 1 19.18590035 -9.986951055 4.206604072 1.000029766 0.416800701 0.295530392 0.272879873 775762841.6 1659309217 363606.6068 0.066588884 1.03E-10 9.986951055 -0.583229065 S(ph)EDRRS(ph)S(ph)EEREAGEI ddPTM_HeLa_A485_30min_R1 2 SEDRRSSEEREAGEI 15 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 3 0 S(1)EDRRS(1)S(1)EEREAGEI;S(1)EDRRS(1)S(1)EEREAGEI ; 75.064 0.007385 698230000 563870 527850 580880 728950 778690 671490 876230 939510 650870 1003390 TRUE FALSE FALSE 689300.9362 589577.4658 795771.6844 768770.6927 701160.8895 706648.1781 689016.3024 709093.6994 781493.6389 753263.339 0.915086266 0.782697677 1.05643225 1.020586896 0.93083103 0.938115718 0.914708398 0.941362287 1.037477331 1 19.52279479 -4.756814683 24.99996806 0.973719502 0.848891982 0.473627352 0.054948555 103.0574088 557083.6555 0.014553831 0.035924737 1.75E-05 4.756814683 -0.12482752 S(ph)EDRRS(ph)S(ph)EEREAGEI ddPTM_HeLa_A486_30min_R1 1 SEDRRSSEEREAGEI 15 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 3 0 S(1)EDRRS(1)S(1)EEREAGEI 75.797 0.0069863 352170000 381470 408290 270950 168970 357670 430000 508230 440830 369250 550910 TRUE FALSE FALSE 354730.9229 375935.6134 375869.0963 393370.6993 312807.6935 376950.9719 381065.4785 340462.6323 401256.8873 412958.5502 0.858998858 0.910347088 0.910186013 0.952567029 0.757479639 0.912805829 0.922769315 0.824447471 0.971663832 1 18.65563746 -7.920174078 6.470360502 0.999503007 0.884056569 0.383536919 0.053510464 0.195633785 11.63226839 0.050749493 0.013159972 1.20E-08 7.920174078 -0.115446439 S(ph)EEAHAEDSVMDHHFR ddPTM_HeLa_A485_30min_R1 1 SEEAHAEDSVMDHHFR 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(1)EEAHAEDSVMDHHFR 189.55 3.82E-18 303280000 474830 443950 439000 604860 678060 494900 670180 661440 619830 872580 TRUE FALSE FALSE 580454.2954 495866.0906 601404.3683 637901.9702 610549.9656 520812.1987 526990.5681 499220.8029 744224.1956 655061.8646 0.886106071 0.75697597 0.918087895 0.973804162 0.93204932 0.795058035 0.804489769 0.762097185 1.13611284 1 19.32127164 -7.765611278 24.99999978 1.068056467 0.85554901 0.556364334 0.076590432 87.73569517 525719.7014 0.069839218 0.02055771 1.72E-08 7.765611278 -0.212507457 S(ph)EEAHAEDSVMDHHFR ddPTM_HeLa_A486_30min_R1 1 SEEAHAEDSVMDHHFR 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(1)EEAHAEDSVMDHHFR 213.69 3.09E-26 280090000 125940 200520 111650 47229 171170 197900 216070 210430 170560 200150 TRUE FALSE FALSE 117112.2564 184630.0649 154883.8701 109951.4988 149700.2625 173485.1101 162007.0006 162519.6827 185344.2781 150031.1372 0.78058634 1.230611647 1.032344838 0.732857864 0.997794626 1.156327368 1.07982252 1.08323969 1.23537208 1 17.19490242 -6.136614811 5.576019751 1.113407531 0.959132549 0.241853181 0.139330256 0.37931295 15.70668926 0.047219208 0.04735414 7.30E-07 6.136614811 -0.154274982 S(ph)EEEEEEEEEEEEEQPR ddPTM_HeLa_A485_30min_R1 2 SEEEEEEEEEEEEEQPR 17 0 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 S(1)EEEEEEEEEEEEEQPR;S(1)EEEEEEEEEEEEEQPR ; 346.42 3.90E-105 514090000 68676 91634 45890 65130 65526 63403 70814 77430 42334 77596 TRUE FALSE FALSE 83952.73927 102349.7992 62866.62064 68687.88698 59002.00136 66722.68304 55684.0104 58440.17109 50830.04549 58252.74525 1.441180822 1.756995293 1.079204428 1.179135622 1.01286216 1.145399805 0.955903626 1.003217459 0.872577683 1 15.83003842 -4.801173661 8.697573482 1.036329911 1.598511627 0.811177855 0.109613 0.09379683 18.9520022 0.028445103 0.060161581 1.58E-05 4.801173661 0.562181716 S(ph)EEEQSSSSVK ddPTM_HeLa_A485_30min_R1 1 SEEEQSSSSVK 11 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 S(1)EEEQSSSSVK 95.428 0.0020367 1181100000 258190 288460 188460 274340 237700 269850 333960 329970 209030 330350 TRUE FALSE FALSE 315623.4748 322192.8877 258179.1965 289326.4995 214033.7534 283978.9287 262606.7178 249044.3401 250980.4037 247999.8246 1.272676201 1.299165789 1.041045883 1.166639936 0.863039938 1.145077135 1.058898804 1.004211759 1.012018472 1 17.91997957 -4.763507974 24.96476652 1.039666525 1.28592106 0.613393584 0.079213712 30.75276881 371160.0076 0.019899217 0.045011463 1.72E-05 4.763507974 0.246254535 S(ph)EEHS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 SEEHSPPR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 S(1)EEHS(1)PPR;S(1)EEHS(1)PPR ; 129.84 0.00052685 4300800000 75604 91278 84848 107360 122735 87112 118262 113450 95208 126846 TRUE FALSE FALSE 92421.84897 101952.1681 116236.806 113224.805 110515.0725 91673.04962 92994.35759 85626.20962 114315.3723 95225.62663 0.97055648 1.070637933 1.220646271 1.189016118 1.160560202 0.962693057 0.976568607 0.899192924 1.200468575 1 16.53906226 -6.260128427 24.99476034 0.999533187 1.128586187 0.255749999 0.096854814 162.6033911 3100244.002 0.03385805 0.032061949 5.49E-07 6.260128427 0.129053 S(ph)EEHS(ph)PPR ddPTM_HeLa_A486_30min_R1 2 SEEHSPPR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 S(1)EEHS(1)PPR;S(1)EEHS(1)PPR ; 146.16 0.00029948 4082400000 117141 128484 97665 50042 123279 121464 142796 124106 117765 141088 TRUE FALSE FALSE 108930.0208 118302.4599 135483.5036 116500.305 107816.1983 106479.0066 107066.9305 95849.77301 127972.965 105758.6465 1.029986904 1.118607923 1.281063138 1.101567663 1.019455164 1.00681136 1.012370468 0.90630673 1.210047304 1 16.69041609 -5.644690607 4.309826062 1.01965971 1.147724087 0.254139841 0.090852451 0.279397556 9.138942433 0.027216117 0.035492039 2.27E-06 5.644690607 0.128064378 S(ph)EEHS(ph)PPRGINDR ddPTM_HeLa_A485_30min_R1 3 SEEHSPPRGINDR 13 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 S(1)EEHS(1)PPRGINDR;S(1)EEHS(1)PPRGINDR;S(1)EEHS(1)PPRGINDR ;; 65.477 0.011803 1652870000 508533 935350 836227 468229 1242450 1177520 1408310 2056820 751968 661739 TRUE FALSE FALSE 621654.4114 1044731.046 1145582.166 493807.1647 1118747.315 1239173.126 1107413.064 1552381.67 902881.0801 496779.6457 1.251368523 2.103006947 2.306016713 0.9940165 2.251999101 2.494412034 2.22918365 3.124889845 1.817467942 1 18.92224654 -5.950977048 24.99943429 2.283244952 1.726140801 0.106157216 0.621228218 208.1207241 106130.8449 0.184983252 0.209751258 1.12E-06 5.950977048 -0.557104151 S(ph)EEKEAGEI ddPTM_HeLa_A485_30min_R1 1 SEEKEAGEI 9 1 Q9NQ29-3;Q9NQ29;B8ZZ08 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 1 0 S(1)EEKEAGEI 116.24 0.0086226 2705400000 2072000 1445300 1103600 3327400 2280600 2153400 3915700 3613100 1636200 4342500 TRUE FALSE FALSE 2532909.252 1614315.263 1511867.565 3509167.437 2053535.456 2266148.694 3079078.707 2726981.56 1964570.332 3259994.668 0.776967299 0.495189541 0.463763815 1.07643349 0.629919882 0.695138773 0.944504216 0.836498779 0.602629922 1 21.63643817 -5.039968786 0.06468796 1.360182884 9.86E-10 0.188266053 0.180431638 180.1220157 2.441932362 17.51176877 35.28246976 9.12E-06 5.039968786 -1.360182883 S(ph)EEKEAGEI ddPTM_HeLa_A486_30min_R1 1 SEEKEAGEI 9 1 Q9NQ29-3;Q9NQ29;B8ZZ08 Q9NQ29-3 LUC7L Putative RNA-binding protein Luc7-like 1 1 0 S(1)EEKEAGEI 95.417 0.035959 2725900000 3119500 2872900 1215600 2191900 2587300 3589400 5032400 4397500 2079100 6391900 TRUE FALSE FALSE 2900839.159 2645240.941 1686312.875 5102853.972 2262776.708 3146576.322 3773240.293 3396285.247 2259318.062 4791326.636 0.605435484 0.552089461 0.351951141 1.065019015 0.472265174 0.656723401 0.787514728 0.708840266 0.471543319 1 22.19199374 -14 0.27312388 3.496486502 0.611287075 0.246650161 0.189775903 316.4900915 3.066889349 447.3229742 0.226394602 1.00E-14 14 -2.885199427 S(ph)EEPSVSIPFLQTALLR ddPTM_HeLa_A486_30min_R1 1 SEEPSVSIPFLQTALLR 17 0 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.993)EEPS(0.007)VSIPFLQTALLR 60.918 0.023507 24172000 14002 14652 10594 13956 19384 18689 24248 25789 15439 25255 TRUE FALSE FALSE 13020.53211 13490.92216 14696.28052 32490.2733 16952.67797 16383.3412 18180.89393 19917.40767 16777.26495 18930.98362 0.687789518 0.712637147 0.776308343 1.716248556 0.895499057 0.86542472 0.96037767 1.052106329 0.886233135 1 14.20846175 -5.025282953 24.91030093 1.053601262 0.711277873 0.298574394 0.232301477 864.6138782 851870.7387 0.064517104 0.112377072 9.43E-06 5.025282953 -0.342323388 S(ph)EESLTSLHAVDGDSK ddPTM_HeLa_A485_30min_R1 1 SEESLTSLHAVDGDSK 16 0 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 S(0.932)EES(0.032)LT(0.032)S(0.005)LHAVDGDSK 95.666 0.00054835 49946000 112470 124320 89193 108920 132610 111920 140850 144370 110740 175320 TRUE FALSE FALSE 137488.5635 138858.1426 122189.2023 114870.0238 119406.8828 117779.9581 110756.2469 108963.0311 132964.5022 131615.9505 1.04461931 1.055025185 0.928376856 0.872766738 0.907237172 0.894876021 0.841510823 0.827886215 1.010246112 1 17.00597481 -4.826665676 4.038635262 0.89755168 1.051822214 0.487610342 0.056687155 0.152159592 4.864585198 0.014599918 0.034770116 1.49E-05 4.826665676 0.154270533 S(ph)EETQERER ddPTM_HeLa_A485_30min_R1 1 SEETQERER 9 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.999)EET(0.001)QERER 74.537 0.0057669 181110000 38029 44847 43321 40870 115830 103630 151320 416050 92999 84309 TRUE FALSE FALSE 46488.41985 50091.46653 59347.24064 43102.62461 104297.5585 109055.9066 118989.2458 314013.0852 111663.0463 63292.31789 0.734503355 0.791430433 0.93766894 0.681008787 1.647870736 1.723051236 1.879995074 4.961314352 1.764243276 1 15.94974278 -6.420360876 1.402817035 2.747092858 0.826630667 0.321083386 0.991015641 0.417460493 1.659312382 0.482150962 0.382193947 3.80E-07 6.420360876 -1.92046219 S(ph)EGFSMDR ddPTM_HeLa_A485_30min_R1 2 SEGFSMDR 8 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 S(1)EGFSMDR;S(1)EGFSMDR ; 167.93 2.82E-05 1928730000 682930 759060 710600 693420 858100 564560 736960 725250 588640 763790 TRUE FALSE FALSE 834845.4224 847825.4641 973480.5105 731299.7788 772664.551 594119.4886 579502.4756 547381.3004 706774.6487 573391.2095 1.45597876 1.478616083 1.69775974 1.275394123 1.347534699 1.036150326 1.010658109 0.954638458 1.232622051 1 19.12916026 -5.914604387 1.471224162 1.037086066 1.525943999 0.772131989 0.112799812 0.179003728 0.801753903 0.043920622 0.052792501 1.22E-06 5.914604387 0.488857933 S(ph)EGFSMDR ddPTM_HeLa_A486_30min_R1 2 SEGFSMDR 8 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 S(1)EGFSMDR;S(1)EGFSMDR ; 148.73 0.00026514 2061600000 288390 352480 347070 103940 546640 335090 300420 287760 322400 298890 TRUE FALSE FALSE 268175.3502 324548.2011 481464.7989 241977.5728 478075.314 293750.0027 225251.7385 222243.3298 350345.8916 224045.9986 1.196965587 1.448578431 2.148955134 1.080035236 2.133826612 1.311114703 1.005381662 0.991954024 1.563723047 1 17.77343543 -6.512946839 24.58348207 1.142258963 1.607379665 0.272305585 0.357966008 513.3712138 1270704.655 0.126953963 0.104457436 3.07E-07 6.512946839 0.465120702 S(ph)EGKRKT(ph)AK ddPTM_HeLa_A486_30min_R1 2 SEGKRKTAK 9 3 P82933 P82933 MRPS9 "28S ribosomal protein S9, mitochondrial" 2 0 S(1)EGKRKT(1)AK;S(1)EGKRKT(1)AK ; 47.823 0.030978 3776700000 919710 1757040 2842500 29440 2869200 759770 426840 914960 1687840 125098 TRUE FALSE FALSE 855243.0784 1617805.751 3943192.125 68537.80782 2509318.182 666037.3022 320040.1173 706643.5814 1834143.33 93772.64655 9.120389686 17.25242713 42.05055813 0.730893393 26.75959647 7.102682143 3.412936812 7.535711185 19.55947067 1 16.51687953 -6.285436027 24.13334094 7.861313506 19.32085975 0.210575168 11.09181228 841.8041081 846595.7024 3.851745595 3.399012285 5.18E-07 6.285436027 11.45954624 S(ph)EGS(ph)EYEEIPK ddPTM_HeLa_A485_30min_R1 2 SEGSEYEEIPK 11 0 P48634 P48634 PRRC2A Protein PRRC2A 2 0 S(1)EGS(1)EYEEIPK;S(1)EGS(1)EYEEIPK ; 161.21 1.53E-07 729590000 1255600 1112610 485310 1454640 726140 1110440 1511230 1357070 656280 1644100 TRUE FALSE FALSE 1534903.888 1242720.061 664846.3644 1534103.3 653842.952 1168580.921 1188343.365 1024246.455 787989.3762 1234256.127 1.243586201 1.006857518 0.538661587 1.24293756 0.529746572 0.946789645 0.962801268 0.829849196 0.638432622 1 20.23521038 -4.522057279 24.99817759 0.837509948 1.184404144 0.261992703 0.211100961 31.55092765 960078.8618 0.050231304 0.136632872 3.01E-05 4.522057279 0.346894195 S(ph)EGS(ph)EYEEIPK ddPTM_HeLa_A486_30min_R1 2 SEGSEYEEIPK 11 0 P48634 P48634 PRRC2A Protein PRRC2A 2 0 S(1)EGS(0.726)EY(0.274)EEIPK;S(1)EGS(0.998)EY(0.002)EEIPK ; 181.88 3.84E-10 669790000 2163470 1543670 387170 722300 664470 1382170 1748190 1364660 1068360 3158200 TRUE FALSE FALSE 2011821.925 1421343.967 537092.5928 1681550.903 581125.9767 1211651.918 1310774.372 1053956.708 1160966.305 2367366.164 0.849814429 0.600390421 0.226873477 0.710304527 0.245473635 0.511814326 0.553684678 0.445202236 0.490404198 1 21.17485144 -10.17638705 5.342230116 1.000019679 0.505753796 0.396727923 0.179145474 4.08E-05 6.29E-06 0.168626027 0.040896193 6.66E-11 10.17638705 -0.494265883 S(ph)EGSEYEEIPKR ddPTM_HeLa_A485_30min_R1 2 SEGSEYEEIPKR 12 1 P48634 P48634 PRRC2A Protein PRRC2A 1 0 S(0.999)EGS(0.001)EYEEIPKR;S(0.997)EGS(0.003)EYEEIPKR ; 107.11 0.00030327 272160000 151882 167217 108927 153834 160069 189543 202976 202381 118437 228150 TRUE FALSE FALSE 185667.6269 186771.5736 149223.6301 162237.5619 144131.9683 199467.1784 159608.5194 152746.7424 142206.2195 171276.4038 1.084023384 1.090468794 0.871244531 0.947226578 0.841516783 1.164592285 0.931876872 0.891814278 0.830273268 1 17.38596688 -4.746269615 24.83094143 0.936166453 1.087246229 0.309853162 0.09097719 274.1833138 448794.5885 0.023566573 0.061820041 1.79E-05 4.746269615 0.151079776 S(ph)EGSEYEEIPKR ddPTM_HeLa_A486_30min_R1 1 SEGSEYEEIPKR 12 1 P48634 P48634 PRRC2A Protein PRRC2A 1 0 S(0.997)EGS(0.003)EYEEIPKR 138.21 5.06E-06 197700000 108800 84411 39981 25486 56058 89267 92040 82404 72459 141580 TRUE FALSE FALSE 101173.6818 77721.96494 55462.71393 59332.69599 49026.68292 78254.14514 69010.6185 63642.40807 78739.80446 106127.4465 0.953322493 0.732345567 0.522604809 0.559070231 0.46196045 0.737360106 0.650261745 0.599679067 0.741936295 1 16.69543829 -8.103936614 3.993248959 0.999927272 0.64436984 0.392241526 0.130154499 0.528619596 17.55758082 0.131658667 0.034579983 7.87E-09 8.103936614 -0.355557432 S(ph)EGSPVLPHEPAK ddPTM_HeLa_A486_30min_R1 1 SEGSPVLPHEPAK 13 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 S(0.635)EGS(0.365)PVLPHEPAK 96.163 0.00081946 729480000 2221200 2269000 1117800 826990 1628100 2186200 2479500 2217900 1793700 3110000 TRUE FALSE FALSE 2065505.35 2089196.176 1550642.096 1925274.514 1423888.517 1916488.872 1859102.875 1712932.586 1949179.36 2331235.757 0.88601307 0.896175417 0.66515885 0.825860065 0.610787009 0.822091402 0.797475274 0.734774499 0.836114217 1 21.15266348 -8.079078166 5.673097393 0.999990062 0.777997844 0.376524057 0.085335481 0.659437313 45.69018501 0.082458968 0.021423429 8.34E-09 8.079078166 -0.221992218 S(ph)EHSLFQAK ddPTM_HeLa_A485_30min_R1 3 SEHSLFQAK 9 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(1)EHSLFQAK;S(1)EHSLFQAK;S(1)EHSLFQAK ;; 219.33 3.83E-12 1332420000 2484210 2697630 1833520 2140110 1700770 2581260 2930330 2436400 1661180 2566600 TRUE FALSE FALSE 3036813.944 3013094.362 2511815.347 2257018.79 1531435.367 2716410.782 2304241.057 1838869.08 1994563.589 1926793.855 1.576096964 1.563786575 1.30362433 1.171385711 0.794810178 1.409808722 1.19589392 0.954367316 1.035172281 1 20.8777708 -4.981675038 2.056564238 1.082605212 1.587556342 0.622647768 0.153088034 0.225988385 1.872868657 0.045987814 0.123857085 1.04E-05 4.981675038 0.50495113 S(ph)EHSLFQAK ddPTM_HeLa_A486_30min_R1 4 SEHSLFQAK 9 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(1)EHSLFQAK;S(1)EHSLFQAK;S(1)EHSLFQAK;S(1)EHSLFQAK ;;; 268.91 2.41E-22 1314430000 4235360 4370800 2353940 1147000 3035830 3743410 3894510 3529610 3740240 5442100 TRUE FALSE FALSE 3938483.135 4024441.89 3265448.609 2670273.966 2655047.893 3281586.134 2920062.406 2725994.854 4064447.015 4079362.738 0.965465292 0.986536905 0.800480079 0.654581153 0.65084869 0.804435973 0.715813374 0.668240367 0.996343614 1 21.95991237 -4.817484346 4.704746268 0.760826159 0.97759044 0.263877611 0.122150472 0.209692744 9.419762119 0.031139756 0.071419526 1.52E-05 4.817484346 0.216764281 S(ph)EIQTQASISR ddPTM_HeLa_A486_30min_R1 2 SEIQTQASISR 11 0 F8VXH2 F8VXH2 WIBG 1 0 S(0.995)EIQT(0.005)QASISR;S(0.991)EIQT(0.008)QASISR ; 62.042 0.018928 796580000 745430 1365780 2291310 31764.4 2156270 585917 382058 773540 1313890 74353 TRUE FALSE FALSE 693179.2064 1257550.619 3178566.595 73949.12848 1885810.51 513632.5177 286463.0474 597421.8283 1427779.043 55734.52484 12.43716006 22.5632249 57.03047804 1.326810064 33.83558962 9.215697436 5.139777332 10.71906202 25.61749736 1 15.76628366 -6.280242334 23.48819261 10 25.69446094 0.207234805 14.75543054 612.3246042 764897.3452 5.145464818 4.547587084 5.25E-07 6.280242334 15.69446094 S(ph)ELEFETLK ddPTM_HeLa_A485_30min_R1 2 SELEFETLK 9 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(1)ELEFETLK;S(1)ELEFETLK ; 225.22 3.13E-12 247680000 323620 209958 136105 429370 189118 165196 265075 188770 172520 442590 TRUE FALSE FALSE 395608.1525 234510.7617 186455.9033 452825.3959 170288.7479 173845.4071 208439.5608 142473.8615 207143.1816 332260.4583 1.190656735 0.705804004 0.561173918 1.362862732 0.51251584 0.523220271 0.627337848 0.428801737 0.623436152 1 18.34195509 -4.262947615 6.083708701 0.688241565 1.203227025 0.230323378 0.264916306 0.189665833 35.60303503 0.067081272 0.406102348 5.46E-05 4.262947615 0.51498546 S(ph)ELEFETLK ddPTM_HeLa_A486_30min_R1 2 SELEFETLK 9 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(1)ELEFETLK;S(1)ELEFETLK ; 261.87 1.46E-21 286380000 538290 595490 195912 191260 299580 670420 692270 538400 453610 824910 TRUE FALSE FALSE 500558.6507 548301.2037 271774.3731 445262.9457 262003.8829 587710.3967 519056.7239 415818.0732 492929.28 618347.1667 0.809510705 0.886720653 0.439517455 0.720085689 0.423716477 0.950453772 0.839426057 0.672467015 0.797172376 1 19.23805753 -6.290590967 24.99880382 0.830653152 0.660276382 0.271732843 0.158452368 1174.182114 1006910.472 0.057097964 0.050363574 5.12E-07 6.290590967 -0.17037677 S(ph)ELPQDVYTIK ddPTM_HeLa_A485_30min_R1 3 SELPQDVYTIK 11 0 H0Y8C4;E9PFR3;Q14738-3;Q14738-2;Q14738 H0Y8C4 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 1 0 S(1)ELPQDVYTIK;S(1)ELPQDVYTIK;S(1)ELPQDVYTIK ;; 199.13 1.29E-14 1331520000 1468400 862660 946440 2569100 1936250 910660 1598590 1280850 1091900 2575710 TRUE FALSE FALSE 1795040.514 963540.5829 1296567.541 2709443.428 1743470.151 958340.7495 1257038.187 966719.5292 1311034.314 1933632.899 0.928325389 0.498305849 0.670534485 1.40121914 0.901655196 0.495616696 0.650091435 0.499949876 0.67801614 1 20.88288249 -6.243155046 23.46999657 0.632566482 0.876121131 0.147782115 0.252554565 704.075183 903758.7407 0.087720407 0.087512553 5.71E-07 6.243155046 0.243554649 S(ph)ELPQDVYTIK ddPTM_HeLa_A486_30min_R1 4 SELPQDVYTIK 11 0 H0Y8C4;E9PFR3;Q14738-3;Q14738-2;Q14738 H0Y8C4 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 1 0 S(1)ELPQDVYTIK;S(1)ELPQDVYTIK;S(1)ELPQDVYTIK;S(1)ELPQDVYTIK ;;; 229.97 2.20E-18 1743730000 1279070 2358380 1254140 1015040 2027440 2538470 2998050 2652500 1783590 2058110 TRUE FALSE FALSE 1189413.798 2171493.38 1739776.595 2363064.417 1773139.57 2225299.381 2247906.18 2048583.654 1938193.017 1542745.86 0.770971959 1.407550936 1.127714318 1.531726306 1.149340028 1.442427712 1.457081324 1.327881479 1.256326831 1 20.55706899 -4.255565728 24.83003721 1.31675994 0.770971697 0.491665568 0.160566631 460.746 1947677.84 0.036867076 0.322137758 5.55E-05 4.255565728 -0.545788242 S(ph)EPAVGPPR ddPTM_HeLa_A485_30min_R1 2 SEPAVGPPR 9 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 S(1)EPAVGPPR;S(1)EPAVGPPR ; 123.75 0.00068279 0 175013 184603 168339 206164 255270 197457 256240 245440 191305 294400 TRUE FALSE FALSE 213944.0381 206190.715 230614.6013 217426.2173 229854.4225 207795.5432 201492.2307 185245.4552 229698.1587 221011.498 0.968022207 0.932941122 1.043450695 0.983777854 1.040011151 0.94020241 0.911682118 0.838171121 1.039304112 1 17.7537619 -6.429526886 9.140673542 0.932692625 0.992421708 0.124494226 0.05860842 0.646014709 58.87201317 0.0203414 0.017916819 3.72E-07 6.429526886 0.059729083 S(ph)EPAVGPPR ddPTM_HeLa_A486_30min_R1 2 SEPAVGPPR 9 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 S(1)EPAVGPPR;S(1)EPAVGPPR ; 113.15 0.0007906 641030000 352690 489630 309460 146097 497640 471750 470950 523790 380390 497640 TRUE FALSE FALSE 327968.2523 450829.9356 429291.1996 340121.1993 435221.3509 413550.2814 353113.3288 404534.4513 413362.5115 373027.7049 0.87920615 1.208569577 1.150829265 0.911785358 1.166726614 1.108631547 0.946614217 1.084462215 1.108128179 1 18.50892326 -10.30844786 12.68656044 1 1.066837593 0.028798237 0.107043478 4.34E-10 4.52E-19 0.099973702 0.024247184 4.92E-11 10.30844786 0.066837593 S(ph)EPDDELLFDFLNSSQKEPTGR ddPTM_HeLa_A485_30min_R1 1 SEPDDELLFDFLNSSQKEPTGR 22 1 Q8TBA6-2;Q8TBA6 Q8TBA6-2 GOLGA5 Golgin subfamily A member 5 1 0 S(1)EPDDELLFDFLNSSQKEPTGR 48.112 0.0068941 0 5810.8 5953.2 3450.4 7414 6723.6 6800.4 8829.7 7543.5 4092.8 8622.4 TRUE FALSE FALSE 7103.392413 6649.374954 4726.846543 7819.008047 6054.174776 7156.458429 6943.162463 5693.444797 4914.187419 6472.994364 1.097388938 1.027248686 0.730241103 1.207942972 0.935297397 1.105587001 1.072635333 0.879568941 0.759183021 1 12.66021753 -7.329430763 6.770982066 0.862380364 1.020458921 0.201827072 0.131280598 0.39661602 33.06337223 0.071075506 0.033797415 4.68E-08 7.329430763 0.158078557 S(ph)EPFLTWL ddPTM_HeLa_A486_30min_R1 1 SEPFLTWL 8 0 Q9GZV5 Q9GZV5 WWTR1 WW domain-containing transcription regulator protein 1 1 0 S(1)EPFLTWL 58.577 0.037196 5158800 9006.7 8877.4 5680.1 3757.3 6452.5 10211 9887.7 7120.6 8573.7 9956 TRUE FALSE FALSE 8375.376841 8173.922493 7879.586838 8747.184283 5643.167283 8951.270638 7413.692879 5499.394822 9316.875219 7462.952797 1.12226046 1.095266541 1.05582697 1.17208088 0.75615744 1.199427476 0.993399406 0.736892618 1.248416742 1 12.86553085 S(ph)EPS(ph)DHS(ph)RHS(ph)PQQPSNGSLR ddPTM_HeLa_A485_30min_R1 1 SEPSDHSRHSPQQPSNGSLR 20 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 4 0 S(1)EPS(1)DHS(0.999)RHS(0.994)PQQPS(0.005)NGS(0.003)LR 51.46 0.0027746 0 68802 96402 73891 73982 89002 83410 94662 99621 72948 86148 TRUE FALSE FALSE 84106.76754 107675.3753 101226.3558 78023.44933 80140.64838 87777.21862 74436.69038 75188.79355 87587.99448 64672.88904 1.30049498 1.664922921 1.565205409 1.2064321 1.239169141 1.357249072 1.150972092 1.162601434 1.354323207 1 15.98087344 -4.406613315 0.159071285 0.951057236 1.998254304 0.456235316 0.138599435 19.00865228 0.555606537 0.610126215 4.193808786 3.92E-05 4.406613315 1.047197069 S(ph)EQKDPLEEPK ddPTM_HeLa_A485_30min_R1 2 SEQKDPLEEPK 11 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 S(1)EQKDPLEEPK;S(1)EQKDPLEEPK ; 78.902 0.0038211 304450000 769390 679520 593820 1658720 802350 809160 1315050 1208950 688250 2011280 TRUE FALSE FALSE 940538.1511 758983.953 813498.7289 1749331.673 722465.2168 851526.3664 1034078.825 912453.1169 826375.462 1509904.911 0.622912174 0.502670034 0.538774808 1.158570756 0.478483917 0.56396026 0.684863541 0.604311643 0.547302983 1 20.52602627 -10.21963504 4.39634559 1.000134742 0.636387803 0.261141645 0.184867422 39844715.23 92622137.14 31950.65885 0.045115828 6.03E-11 10.21963504 -0.363746939 S(ph)EQKDPLEEPK ddPTM_HeLa_A486_30min_R1 2 SEQKDPLEEPK 11 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 S(1)EQKDPLEEPK;S(1)EQKDPLEEPK ; 105.14 0.00020843 243870000 749460 597860 217960 634100 442870 914190 1414870 1104270 463720 2130220 TRUE FALSE FALSE 696926.7242 550483.3962 302359.9492 1476216.846 387321.115 801406.5326 1060854.561 852851.827 503915.623 1596799.047 0.436452367 0.344741812 0.189353789 0.92448505 0.242560963 0.501883148 0.664363223 0.534100912 0.31557861 1 20.60675133 -14 0.262793862 4.449850234 0.426252046 0.374709727 0.206346076 216.3641134 2.1228517 404.1476825 0.266847497 1.00E-14 14 -4.023598188 S(ph)EREWDRDK ddPTM_HeLa_A486_30min_R1 1 SEREWDRDK 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(1)EREWDRDK 55.261 0.029294 470240000 160740 247860 226670 61042 313470 176960 238400 275530 194490 140300 TRUE FALSE FALSE 149472.9561 228218.6709 314442.6944 142108.8609 274151.6696 155128.4744 178749.7985 212797.8338 211348.5498 105167.9668 1.421278367 2.170039774 2.989909418 1.35125614 2.606798229 1.475054421 1.699660114 2.023409221 2.009628561 1 16.68233581 -6.286781827 24.95195131 1.709145415 2.118280748 0.155648044 0.531227997 1663.369767 1637733.195 0.183299585 0.161717165 5.17E-07 6.286781827 0.409135333 S(ph)ESDQEDNDDINDNDWSYGSEKK ddPTM_HeLa_A485_30min_R1 1 SESDQEDNDDINDNDWSYGSEKK 23 1 K7EKG9;Q14CW9;Q14CW9-2 K7EKG9 ATXN7L3 Ataxin-7-like protein 3 1 0 S(0.5)ES(0.5)DQEDNDDINDNDWSYGSEKK 50.229 0.022872 61218000 24739 21047 12083 28168 28269 29575 42491 43680 18894 42396 TRUE FALSE FALSE 30242.1052 23508.26357 16553.00452 29706.74651 25454.4391 31123.50127 33412.45073 32967.41151 22685.85249 31827.45744 0.950189165 0.73861582 0.52008567 0.93336851 0.799763511 0.977882111 1.049799557 1.035816687 0.712776147 1 14.95798429 -5.853631702 1.745218103 0.958846396 0.748688019 0.251312437 0.141684281 0.470894348 2.956531796 0.052503651 0.064831259 1.40E-06 5.853631702 -0.210158377 S(ph)ESELIDELSEDFDR ddPTM_HeLa_A485_30min_R1 1 SESELIDELSEDFDR 15 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(1)ESELIDELSEDFDR 307.03 2.35E-68 183660000 44993 51602 47919 41133 47529 37579 52573 44575 38976 56074 TRUE FALSE FALSE 55001.53763 57636.40502 65646.23218 43379.99164 42796.84588 39546.57833 41340.34907 33642.91136 46798.12569 42095.78377 1.306580676 1.369172869 1.559449102 1.030506805 1.016653975 0.939442737 0.982054386 0.799199073 1.11170577 1 15.36138812 -5.364969392 5.456718657 0.969052434 1.405655582 0.811937179 0.094712227 0.088402395 3.815065588 0.026661226 0.03998744 4.32E-06 5.364969392 0.436603147 S(ph)ESELIDELSEDFDR ddPTM_HeLa_A486_30min_R1 2 SESELIDELSEDFDR 15 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.995)ES(0.005)ELIDELSEDFDR;S(1)ESELIDELSEDFDR ; 350.88 4.32E-104 324730000 113307 101809 61624 33456 93294 78839 90414 94558 85435 120853 TRUE FALSE FALSE 105364.7644 93741.28406 85486.46315 77887.25877 81592.19659 69112.64576 67791.4609 73029.20759 92840.57459 90590.62218 1.163086883 1.034779117 0.943656872 0.859771761 0.900669348 0.762911702 0.748327578 0.806145336 1.024836483 1 16.46707409 -4.534557124 1.181729691 0.851893682 1.227579755 0.533412123 0.086707889 0.739351864 1.234820983 0.027805372 0.305843169 2.92E-05 4.534557124 0.375686074 S(ph)ESELIDELSEDFDRSECK ddPTM_HeLa_A485_30min_R1 2 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.877)ES(0.123)ELIDELSEDFDRSECK;S(0.625)ES(0.375)ELIDELSEDFDRSECK ; 161.68 1.25E-12 128532000 53652 37231 47653 83063 100729 64851 112163 107107 56003 131986 TRUE FALSE FALSE 65586.7023 41584.84158 65281.82771 87600.52136 90700.06708 68246.49808 88198.45876 80838.84031 67242.28841 99084.31922 0.661928172 0.41969145 0.658851251 0.884100754 0.915382654 0.688771933 0.890135386 0.815859068 0.678637033 1 16.59636914 -5.052463422 4.463353499 0.828836357 0.538443693 0.561362409 0.107719502 0.142247298 5.983721037 0.028267454 0.053400322 8.86E-06 5.052463422 -0.290392664 S(ph)ESELIDELSEDFDRSECK ddPTM_HeLa_A486_30min_R1 2 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.997)ES(0.003)ELIDELSEDFDRSECK;S(0.997)ES(0.003)ELIDELSEDFDRSECK ; 122.3 4.28E-06 77872000 27977.4 34828 22358.5 25585.1 44603 40638 53581 59482 28424.5 53867 TRUE FALSE FALSE 26016.32874 32068.10244 31016.30998 59563.4058 39008.47583 35624.49674 40174.46708 45939.24708 30888.35855 40378.35258 0.644313774 0.794190461 0.768142036 1.475132144 0.966073981 0.882267216 0.994950623 1.137719697 0.764973224 1 15.30129443 -5.036041893 24.99720932 1.03413988 0.734730217 0.366647648 0.178819434 600.8883032 416751.5671 0.048404523 0.083879588 9.20E-06 5.036041893 -0.299409663 S(ph)ESETSTMAAK ddPTM_HeLa_A485_30min_R1 3 SESETSTMAAK 11 0 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.999)ES(0.001)ETSTMAAK;S(0.998)ES(0.002)ETSTMAAK;S(1)ESETSTMAAK ;; 193.73 3.93E-11 1518840000 1114100 971450 710780 1187020 1144510 918790 1251390 1153710 808480 1486270 TRUE FALSE FALSE 1361927.701 1085052.627 973727.1 1251863.897 1030558.566 966896.4237 984020.3036 870760.8136 970734.5202 1115770.242 1.22061662 0.972469588 0.87269499 1.121972831 0.923629729 0.866573052 0.88192019 0.780412294 0.870012915 1 20.08960855 -5.959983569 6.678687573 0.869101794 1.029242172 0.383497233 0.099077557 0.212544524 25.51436964 0.031048147 0.035024433 1.10E-06 5.959983569 0.160140379 S(ph)ESETSTMAAK ddPTM_HeLa_A486_30min_R1 2 SESETSTMAAK 11 0 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.999)ES(0.001)ETSTMAAK;S(1)ESETSTMAAK ; 208.33 5.65E-15 925020000 706310 716150 434480 279660 731580 739360 818350 725920 562890 915390 TRUE FALSE FALSE 656801.3164 659399.6658 602722.2918 651062.6132 639818.4147 648145.2805 613590.1744 560643.8627 611681.7584 686170.3858 0.957198576 0.960985317 0.878385754 0.948835197 0.932448307 0.944583581 0.894224215 0.817062168 0.891442958 1 19.38820734 -6.836159419 5.676972651 0.884366884 0.935761116 0.087263204 0.047576037 0.332586201 18.53296685 0.019438895 0.013088677 1.46E-07 6.836159419 0.051394232 S(ph)ESFSISGVQPARTPPMLRPVDPQIPHLVAVK ddPTM_HeLa_A485_30min_R1 1 SESFSISGVQPARTPPMLRPVDPQIPHLVAVK 32 2 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 S(0.229)ES(0.213)FS(0.213)IS(0.213)GVQPART(0.132)PPMLRPVDPQIPHLVAVK 82.037 0.00023228 637910000 290500 245930 182840 277890 338730 289810 424910 445650 254770 450300 TRUE FALSE FALSE 355120.7228 274689.3742 250480.1246 293070.427 305004.8518 304984.0035 334124.5073 336353.6387 305900.0021 338048.4972 1.050502297 0.812573866 0.740959143 0.866947877 0.902251761 0.902190088 0.988392228 0.994986345 0.904899755 1 18.36687071 -6.393497528 1.720787387 0.971089592 0.858380843 0.248574886 0.077953814 0.504026908 2.966534218 0.036012614 0.029787151 4.04E-07 6.393497528 -0.112708749 S(ph)ESLELPQAAPPQIYHEK ddPTM_HeLa_A485_30min_R1 1 SESLELPQAAPPQIYHEK 18 0 B0QY58;B0QY55;B0QY57;B0QY56;H0YGT9;Q15040 B0QY58 JOSD1 Josephin-1 1 0 S(0.5)ES(0.5)LELPQAAPPQIYHEK 83.245 0.0013985 334360000 55415 63516 46776 64922 79660 70603 85698 91107 55588 95014 TRUE FALSE FALSE 67741.87557 70943.64368 64080.38891 68468.52447 71728.7707 74299.66391 67387.92221 68762.8654 66744.00172 71328.7584 0.949713371 0.994600849 0.898380826 0.959900691 1.005608009 1.041650879 0.944751089 0.96402723 0.935723588 1 16.12219624 -5.5340808 24.33395876 0.981419112 0.948413959 0.159999688 0.035960467 319.157759 693294.4919 0.01118261 0.014451549 2.92E-06 5.5340808 -0.033005152 S(ph)ESNEDLFGLVPFDEITGSQQQK ddPTM_HeLa_A485_30min_R1 1 SESNEDLFGLVPFDEITGSQQQK 23 0 H0Y9P1;Q9NSY1 H0Y9P1 BMP2K BMP-2-inducible protein kinase 1 0 S(0.5)ES(0.5)NEDLFGLVPFDEITGSQQQK 77.045 0.0041585 31625000 24990 24686 19992 40837 40822 32052 46192 37351 22582 58793 TRUE FALSE FALSE 30548.93929 27572.81296 27387.87274 43067.82191 36757.61835 33730.19316 36322.70185 28190.60869 27114.00027 44136.9871 0.692139208 0.624709904 0.620519762 0.975776208 0.832807601 0.764216032 0.822953813 0.638707137 0.614314706 1 15.42970053 S(ph)ESPMQEIVTDDGENLRPIVIDGSNVAMSHGNK ddPTM_HeLa_A486_30min_R1 1 SESPMQEIVTDDGENLRPIVIDGSNVAMSHGNK 33 1 E9PP00;Q9C0D7;Q9C0D7-2 E9PP00 ZC3H12C Probable ribonuclease ZC3H12C 1 0 S(0.464)ES(0.464)PMQEIVT(0.073)DDGENLRPIVIDGSNVAMSHGNK 42.18 0.034429 62098000 22057 20823 20306 10314 30100 23228 38712 24044 19819 27352 TRUE FALSE FALSE 20510.9182 19172.90964 28169.02701 24011.51324 26324.57733 20362.36552 29025.84815 18569.70608 21536.92688 20502.88117 1.000391995 0.935132457 1.373905783 1.171128733 1.283945272 0.993146542 1.415696063 0.905712028 1.050434166 1 14.32353904 -7.327900885 24.99999935 0.983554744 1.164515173 0.224269319 0.155231047 307.7558875 115762.6501 0.084192462 0.040444753 4.70E-08 7.327900885 0.180960429 S(ph)ESS(ph)DFEVVPK ddPTM_HeLa_A485_30min_R1 2 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 2 0 S(1)ES(0.001)S(0.999)DFEVVPK;S(0.963)ES(0.061)S(0.976)DFEVVPK ; 223.36 1.22E-17 410570000 931400 851690 360430 1058300 525860 847960 1099530 1095550 512300 1247790 TRUE FALSE FALSE 1138586.717 951287.7368 493768.0557 1116112.249 473503.532 892357.8744 864606.4332 826864.6447 615113.9109 936738.9169 1.215479251 1.01553135 0.527113849 1.191487008 0.505480795 0.952621759 0.922996171 0.882705554 0.656654592 1 19.83728748 -4.526538409 24.93451138 0.830503842 1.165492394 0.262601339 0.203872054 105.8321665 721075.7623 0.048071895 0.128515341 2.97E-05 4.526538409 0.334988552 S(ph)ESS(ph)DFEVVPK ddPTM_HeLa_A486_30min_R1 3 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 2 0 S(1)ES(0.009)S(0.991)DFEVVPK;S(1)ES(0.023)S(0.977)DFEVVPK;S(0.619)ES(0.568)S(0.813)DFEVVPK ;; 244.26 1.19E-21 572020000 1282620 945110 333693 373589 487311 867900 1039430 883180 645110 1757370 TRUE FALSE FALSE 1192714.961 870216.0416 462907.8662 869734.0721 426187.9104 760827.3222 779353.62 682099.1937 701028.6542 1317313.113 0.905414931 0.66059924 0.351403065 0.660233367 0.323528177 0.57755997 0.591623671 0.517795797 0.532165547 1 20.32916687 -10.71179717 7.383077925 1.003277335 0.560109253 0.406898314 0.155806589 0.008417931 0.000328599 0.151088263 0.036486316 1.94E-11 10.71179717 -0.443168083 S(ph)ESSDFEVVPK ddPTM_HeLa_A485_30min_R1 2 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.999)ES(0.001)SDFEVVPK;S(0.54)ES(0.329)S(0.131)DFEVVPK ; 158.04 1.89E-07 343830000 294970 316460 198881 337320 258170 321300 341920 362160 219176 391910 TRUE FALSE FALSE 360585.0589 353467.2442 272455.358 355746.9375 232465.6883 338122.7712 268865.9988 273339.6922 263162.6128 294214.0496 1.225587491 1.201394851 0.926044689 1.209143268 0.790124362 1.149240737 0.913844866 0.92905044 0.894459708 1 18.16650662 -2.96270597 0.449302118 0.941315894 2.130814836 0.369296546 0.119090554 15.07437978 0.954408611 0.072700054 12.22665352 0.001089668 2.96270597 1.189498942 S(ph)ESSDFEVVPK ddPTM_HeLa_A486_30min_R1 2 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(1)ESSDFEVVPK;S(0.988)ES(0.006)S(0.006)DFEVVPK ; 221.6 6.85E-18 258750000 599730 406860 156074 138140 261443 405160 412660 372020 311640 664920 TRUE FALSE FALSE 557692.024 374618.9318 216510.0326 321596.9012 228650.3811 355175.4786 309408.1033 287319.1671 338653.2061 498419.7041 1.118920499 0.751613407 0.434393004 0.645233121 0.458750686 0.712603205 0.620778233 0.57646029 0.679453889 1 18.92700158 -8.051094686 20.61653183 1.000000002 0.651110723 0.234110639 0.179784412 2208.802768 891245.7331 0.176751052 0.045636925 8.89E-09 8.051094686 -0.348889279 S(ph)ESTQPLLDSEERPEDLQLVDHVDGGDGILPR ddPTM_HeLa_A485_30min_R1 1 SESTQPLLDSEERPEDLQLVDHVDGGDGILPR 32 1 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 0 S(0.433)ES(0.406)T(0.063)QPLLDS(0.098)EERPEDLQLVDHVDGGDGILPR 78.216 0.00054231 36023000 10953 13424 11617 13913 11553 15135 18611 19173 12574 23906 TRUE FALSE FALSE 13389.45706 14993.82003 15914.61172 14673.03196 10402.74275 15927.4452 14634.60781 14470.79169 15097.48646 17946.67416 0.74606899 0.835465106 0.8867722 0.817590593 0.579647386 0.887487289 0.815449575 0.806321637 0.841241465 1 14.13142889 -8.648982094 0.815700993 1.002364092 0.793902146 0.355872744 0.082445422 2.887012778 2.670490271 0.097334638 0.028848775 2.24E-09 8.648982094 -0.208461946 S(ph)ESVEGFLSPSR ddPTM_HeLa_A486_30min_R1 1 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.522)ES(0.478)VEGFLSPSR 128.1 3.50E-05 76466000 71983 80206 57422 22901 67975 78592 74536 87028 67697 73154 TRUE FALSE FALSE 66937.36342 73850.18445 79657.33621 53314.68535 59448.94166 68896.1181 55886.30444 67213.62421 73565.03047 54835.76225 1.220688118 1.346752218 1.452653031 0.972261225 1.084127205 1.256408506 1.019157976 1.225726086 1.341552072 1 15.74282946 -5.252263516 24.97571869 1.136796622 1.340703226 0.378554212 0.123899713 735.4763126 2001883.337 0.034247878 0.058286003 5.59E-06 5.252263516 0.203906604 S(ph)ET(ph)PPHWR ddPTM_HeLa_A485_30min_R1 3 SETPPHWR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 S(1)ET(1)PPHWR;S(1)ET(1)PPHWR;S(1)ET(1)PPHWR ;; 111.27 0.00088759 4948900000 2964920 3800030 3123390 4442730 4091150 3405430 4654830 4065020 2760874 5499890 TRUE FALSE FALSE 3624456.225 4244410.453 4278861.936 4685425.09 3683820.741 3583733.049 3660287.544 3068067.471 3314956.088 4128868.641 0.877832777 1.027983891 1.036327941 1.134796357 0.89221069 0.867969742 0.886511018 0.743077036 0.802872742 1 21.97731509 -5.939725032 7.773470117 0.849377909 1.020978344 0.443223593 0.084632614 0.21543329 24.0501048 0.026709507 0.030296321 1.15E-06 5.939725032 0.171600435 S(ph)ET(ph)PPHWR ddPTM_HeLa_A486_30min_R1 3 SETPPHWR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 S(1)ET(1)PPHWR;S(1)ET(1)PPHWR;S(1)ET(1)PPHWR ;; 95.642 0.0071534 5769100000 1549710 1585190 1059330 719520 1429760 1515760 1960620 1739200 1257400 2393170 TRUE FALSE FALSE 1441083.332 1459573.771 1469530.946 1675078.923 1250426.169 1328760.942 1470052.139 1343222.126 1366392.444 1793904.655 0.803322143 0.813629513 0.819180073 0.9337614 0.697041599 0.740708788 0.819470608 0.748770077 0.761686214 1 20.77467178 -1.028876691 22.71108331 0.805146321 0.004424503 0 0.08711665 0 0 0.019130685 0 0.09356713 1.028876691 -0.800721818 S(ph)ETEDSILHQLFIVR ddPTM_HeLa_A485_30min_R1 1 SETEDSILHQLFIVR 15 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 0 S(0.796)ET(0.204)EDSILHQLFIVR 171.72 2.04E-12 13435000 7478.5 7966.1 5670 6005.7 7434.2 6787.6 8742.8 9755.2 7672.7 8888.2 TRUE FALSE FALSE 9142.066524 8897.666099 7767.568948 6333.776184 6694.024945 7142.98824 6874.829358 7362.721904 9212.540512 6672.535315 1.37010388 1.33347606 1.164110579 0.949230822 1.003220609 1.070505873 1.030317418 1.103436933 1.380665681 1 12.70401932 -4.839345081 3.33468874 1.074718797 1.359973912 0.487161652 0.111352053 0.19867957 4.347570496 0.031019473 0.078361319 1.45E-05 4.839345081 0.285255115 S(ph)ETEDSILHQLFIVR ddPTM_HeLa_A486_30min_R1 1 SETEDSILHQLFIVR 15 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 0 S(0.5)ET(0.5)EDS(0.001)ILHQLFIVR 120.29 5.36E-05 12962000 11915 13947 8462.9 5080.6 11034 11108 14168 9469.8 10268 15320 TRUE FALSE FALSE 11079.82003 12841.78893 11739.96152 11827.89356 9650.012832 9737.607898 10623.01655 7313.733264 11158.03851 11483.77228 0.96482408 1.118255274 1.022308805 1.029965874 0.840317327 0.847945053 0.925045907 0.636875504 0.971635298 1 13.48730901 -5.750834941 10.32170353 0.853733827 1.039181176 0.384871236 0.099885643 0.205669949 181.3059769 0.028466169 0.035471417 1.77E-06 5.750834941 0.185447348 S(ph)ETPPVPPPPPYLASYPGFPENGAPGPPISR ddPTM_HeLa_A486_30min_R1 1 SETPPVPPPPPYLASYPGFPENGAPGPPISR 31 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 S(0.5)ET(0.5)PPVPPPPPYLASYPGFPENGAPGPPISR 67.367 0.001575 111290000 128870 128730 88325 54447 139890 132960 146120 153600 116730 165630 TRUE FALSE FALSE 119836.8785 118528.966 122526.8054 126755.3676 122343.6918 116556.747 109559.2305 118628.6331 126848.2504 124155.1699 0.965218593 0.954684094 0.986884441 1.020943128 0.985409563 0.938798981 0.882437925 0.955486857 1.021691247 1 16.92178481 -6.247440741 23.41264707 0.952073114 0.983440623 0.064828596 0.038421012 772.6093503 1292183.539 0.013552839 0.013469693 5.66E-07 6.247440741 0.031367509 S(ph)EVLAEESIVCLQK ddPTM_HeLa_A485_30min_R1 4 SEVLAEESIVCLQK 14 0 O43663-2;O43663-4;O43663;O43663-3;H0YLA0;H0YM42 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK ;;; 332.06 2.97E-81 597392000 522708 493910 339839 748241 783850 457655 740758 772474 475827 872294 TRUE FALSE FALSE 638982.5913 551668.4781 465559.588 789115.5112 705807.1417 481617.1081 582489.0019 583023.5403 571321.1144 654847.1592 0.975773633 0.84243853 0.710943892 1.205037695 1.077819659 0.735464912 0.889503747 0.890320027 0.872449558 1 19.3207987 -9.233122823 14.94222196 0.999994009 0.910317162 0.034938107 0.140142565 0 0 0.14161827 0.034347476 5.85E-10 9.233122823 -0.089676848 S(ph)EVLAEESIVCLQK ddPTM_HeLa_A486_30min_R1 5 SEVLAEESIVCLQK 14 0 O43663-2;O43663-4;O43663;O43663-3;H0YLA0;H0YM42 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK ;;;; 376.58 1.02E-109 809003000 636433 733936 456457 412585 729259 788116 1011925 925823 597549 827278 TRUE FALSE FALSE 591822.3332 675776.2384 633209.3747 960518.7309 637788.5361 690886.2609 758730.6619 715033.3135 649345.0284 620122.2041 0.954364042 1.089746882 1.02110418 1.548918462 1.028488469 1.114113083 1.223517973 1.153052267 1.047124299 1 19.24219302 -7.883571925 3.688297916 1.002274567 1.147594019 0.087734326 0.154598277 0.539715282 13.05635865 0.148387842 0.039504456 1.31E-08 7.883571925 0.145319451 S(ph)FADIGK ddPTM_HeLa_A485_30min_R1 1 SFADIGK 7 0 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-14;Q9Y6M7-4;Q9Y6M7-3;Q9Y6M7-11;C9JRP1;Q6U841-4;E7EW28;F8WDX9;Q6U841;Q6U841-3;Q6U841-2;C9J240 Q9Y6M7-7 SLC4A7;SLC4A10 Sodium bicarbonate cotransporter 3;Anion exchange protein;Sodium-driven chloride bicarbonate exchanger 1 0 S(1)FADIGK 105.4 0.0034584 145250000 131860 109230 74755 154750 108350 130070 181960 169010 108260 288150 TRUE FALSE FALSE 161191.8021 122003.4983 102409.9853 163203.6007 97562.29356 136880.2641 143082.7595 127560.0325 129986.789 216319.508 0.745156105 0.563996745 0.473420018 0.754456231 0.451010149 0.632768932 0.661441776 0.589683444 0.600901833 1 17.72280425 -10.23686027 3.316160041 1.001164692 0.604273028 0.6082596 0.094308928 30053563.05 45326367.62 360422.8726 0.023513158 5.80E-11 10.23686027 -0.396891664 S(ph)FADIGK ddPTM_HeLa_A486_30min_R1 1 SFADIGK 7 0 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-9;Q9Y6M7-2;Q9Y6M7;Q9Y6M7-14;Q9Y6M7-4;Q9Y6M7-3;Q9Y6M7-11;C9JRP1;Q6U841-4;E7EW28;F8WDX9;Q6U841;Q6U841-3;Q6U841-2;C9J240 Q9Y6M7-7 SLC4A7;SLC4A10 Sodium bicarbonate cotransporter 3;Anion exchange protein;Sodium-driven chloride bicarbonate exchanger 1 0 S(1)FADIGK 128.36 0.0017088 126630000 188620 195760 126800 72449 238240 212580 251760 209860 227740 377580 TRUE FALSE FALSE 175398.712 180247.2647 175900.3558 168664.9334 208357.7177 186354.041 188766.9852 162079.4592 247480.6866 283031.5104 0.619714433 0.636845221 0.621486829 0.595922811 0.736164385 0.658421533 0.666946888 0.572655175 0.8743927 1 18.11060315 -7.925545243 4.221007546 0.997432227 0.641983991 0.888796162 0.043243396 0.056934397 1.850007253 0.042414079 0.011148153 1.19E-08 7.925545243 -0.355448237 S(ph)FAGNLNTYK ddPTM_HeLa_A485_30min_R1 1 SFAGNLNTYK 10 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 S(1)FAGNLNTYK 110.51 0.00072469 626010000 325010 223640 215080 590620 395480 330690 397780 328290 253740 655160 TRUE FALSE FALSE 397307.3532 249792.7526 294647.0422 622884.0751 356104.6226 348004.4171 312791.0534 247776.3628 304663.2906 491840.6693 0.80779687 0.507873318 0.599070107 1.266434669 0.724024353 0.707555188 0.635960125 0.503773637 0.61943493 1 18.90783151 -6.356443452 3.219075423 0.652416492 0.782772362 0.02740731 0.221723392 0.839725552 16.67448369 0.086945713 0.076120004 4.40E-07 6.356443452 0.13035587 S(ph)FAGNLNTYK ddPTM_HeLa_A486_30min_R1 1 SFAGNLNTYK 10 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 S(1)FAGNLNTYK 135.94 4.32E-05 345320000 365320 434260 305470 201570 380810 516930 553860 455630 363420 506000 TRUE FALSE FALSE 339712.9545 399847.6561 423756.1648 469265.1468 333045.2589 453156.4324 415278.3699 351892.9953 394921.5382 379294.3065 0.895644751 1.054188395 1.117222583 1.237205881 0.878065537 1.194735657 1.094871088 0.927757125 1.041200808 1 18.53295819 -7.243998222 24.59918575 0.988359216 1.072969991 0.093757 0.109828662 1486.861516 2097090.168 0.05154594 0.029664314 5.70E-08 7.243998222 0.084610775 S(ph)FAGNLNTYKR ddPTM_HeLa_A485_30min_R1 2 SFAGNLNTYKR 11 1 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 S(1)FAGNLNTYKR;S(1)FAGNLNTYKR ; 89.232 0.0017054 3235300000 2163610 2456730 1818490 1800890 3100900 2881200 3853500 4564200 2026310 2378810 TRUE FALSE FALSE 2644897.58 2744023.203 2491225.125 1899268.061 2792163.508 3032055.177 3030168.245 3444822.794 2432971.831 1785816.446 1.481057914 1.536565087 1.395006262 1.06352927 1.563522116 1.697853765 1.696797144 1.928990408 1.362386284 1 20.76815237 -5.974785429 24.92063558 1.608069381 1.374193591 0.064086473 0.261488563 414.0767075 409247.6038 0.07902344 0.089600949 1.06E-06 5.974785429 -0.23387579 S(ph)FAGNLNTYKR ddPTM_HeLa_A486_30min_R1 2 SFAGNLNTYKR 11 1 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 S(1)FAGNLNTYKR;S(1)FAGNLNTYKR ; 126.16 3.44E-05 2766900000 2888500 2720600 1988270 1205190 2988400 2761100 3586500 3596500 2031600 3439800 TRUE FALSE FALSE 2686031.066 2505009.748 2758181.392 2805743.227 2613567.006 2420463.555 2689119.766 2777655.461 2207700.724 2578451.691 1.041722471 0.971517037 1.069704506 1.088150395 1.01361876 0.938727518 1.04292036 1.077257127 0.856211785 1 21.29807359 -5.997504708 24.96665819 0.989881895 1.041017124 0.165214218 0.06237758 168.5331473 1686220.512 0.019509567 0.022000999 1.01E-06 5.997504708 0.05113523 S(ph)FDASDTLALPR ddPTM_HeLa_A485_30min_R1 2 SFDASDTLALPR 12 0 Q5JXC2 Q5JXC2 MIIP Migration and invasion-inhibitory protein 1 0 S(0.999)FDAS(0.001)DTLALPR;S(0.999)FDAS(0.001)DTLALPR ; 85.554 0.0028462 38976000 72661 68314 85679 79490 116382 73589 109671 98067 74766 120721 TRUE FALSE FALSE 88824.18877 76302.72805 117375.2275 83832.33742 104794.5994 77442.00625 86238.89492 74015.91449 89770.85041 90627.47641 0.980102197 0.84193813 1.295139533 0.925021205 1.156322603 0.854509133 0.951575597 0.816705015 0.990547833 1 16.46766089 -6.280364656 24.97156903 0.913018336 1.036537228 0.171904973 0.127466124 1420.19568 1873917.38 0.04349729 0.038419869 5.24E-07 6.280364656 0.123518892 S(ph)FDASDTLALPR ddPTM_HeLa_A486_30min_R1 2 SFDASDTLALPR 12 0 Q5JXC2 Q5JXC2 MIIP Migration and invasion-inhibitory protein 1 0 S(1)FDASDTLALPR;S(1)FDASDTLALPR ; 143.42 2.19E-07 109122000 82876 123130 95514 56397 142468 137774 145756 162116 113575 129063 TRUE FALSE FALSE 77066.82037 113372.7304 132499.5788 131295.0661 124598.335 120776.8447 109286.3072 125205.7258 123419.7724 96744.78474 0.796599223 1.171874336 1.369578516 1.357128103 1.287907512 1.248406774 1.129635127 1.294185791 1.27572533 1 16.56189627 -4.289185428 3.51420614 1.258005314 0.754262727 0.620095558 0.104258688 0.160069159 3.507950216 0.025782964 0.204789786 5.14E-05 4.289185428 -0.503742587 S(ph)FDEQNVPK ddPTM_HeLa_A485_30min_R1 2 SFDEQNVPK 9 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(1)FDEQNVPK;S(1)FDEQNVPK ; 108.35 0.0010207 117113000 184087 155269 155849 300181 194748 162355 273859 275053 219664 482850 TRUE FALSE FALSE 225036.5181 173426.3589 213504.0305 316579.1279 175358.2053 170855.6568 215346.7874 207595.8205 263748.5499 362484.3812 0.620817143 0.478438156 0.589002014 0.873359362 0.483767617 0.471346258 0.5940857 0.572702801 0.727613557 1 18.46755931 -8.101432235 2.565587741 0.999700119 0.584417796 0.572902775 0.109410806 0.315942355 4.485356324 0.109634999 0.029672653 7.92E-09 8.101432235 -0.415282323 S(ph)FDEQNVPK ddPTM_HeLa_A486_30min_R1 1 SFDEQNVPK 9 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(1)FDEQNVPK 60.434 0.030872 53932000 102640 118560 51878 44205 83465 124520 142910 157790 98890 176650 TRUE FALSE FALSE 95445.46603 109164.8738 71966.55094 102911.474 72996.04142 109157.9884 107152.4065 121864.6615 107461.8648 132415.6902 0.720801786 0.824410413 0.543489603 0.777184893 0.55126429 0.824358414 0.809212309 0.920318894 0.811549331 1 17.01471455 -6.635094115 2.280755622 0.88773963 0.68932446 0.484744984 0.097795831 0.271356889 2.874358416 0.042353012 0.030394998 2.32E-07 6.635094115 -0.19841517 S(ph)FDGNTLLNR ddPTM_HeLa_A485_30min_R1 1 SFDGNTLLNR 10 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 S(1)FDGNTLLNR 71.085 0.0079865 0 33713 36887 30431 43996 47148 42272 53610 53503 49763 74703 TRUE FALSE FALSE 41212.34054 41200.61378 41688.69324 46399.39008 42453.77957 44485.29656 42155.78555 40381.30536 59749.97765 56080.91691 0.734872802 0.734663698 0.743366827 0.82736504 0.75700937 0.793234116 0.751695726 0.7200543 1.065424407 1 15.77522232 -7.762335524 25 1.032712324 0.759804001 0.916609152 0.033165734 6.039788962 168448.5617 0.027113892 0.008552901 1.73E-08 7.762335524 -0.272908323 S(ph)FDGNTLLNR ddPTM_HeLa_A486_30min_R1 2 SFDGNTLLNR 10 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 S(1)FDGNTLLNR;S(1)FDGNTLLNR ; 92.247 0.002906 178580000 123214 147826 92920 62631 131292 155055 183891 192196 123696 197349 TRUE FALSE FALSE 114577.3349 136111.7294 128901.1125 145808.1332 114824.1331 135925.8906 137879.5268 148437.1664 134418.0689 147931.5259 0.774529528 0.920099543 0.871356607 0.985646111 0.776197855 0.918843294 0.932049649 1.003418072 0.908650594 1 17.17457001 -6.727381918 2.76197869 0.965195833 0.87422367 0.32472911 0.064158302 0.344105618 5.363686871 0.027684332 0.019158535 1.87E-07 6.727381918 -0.090972163 S(ph)FDHLISDTK ddPTM_HeLa_A485_30min_R1 4 SFDHLISDTK 10 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(1)FDHLISDTK;S(1)FDHLISDTK;S(1)FDHLISDTK;S(1)FDHLISDTK ;;; 263.74 8.17E-27 572828000 2219150 1993920 1620350 2905470 2678330 2207710 3306530 3121730 2002550 3796330 TRUE FALSE FALSE 2712792.262 2227091.599 2219784.893 3064188.469 2411666.061 2323302.282 2600062.854 2356120.823 2404443.417 2849974.797 0.951865351 0.781442559 0.77887878 1.075163357 0.846206101 0.815200992 0.912310823 0.826716371 0.843671817 1 21.44251773 -10.35062872 4.566701975 1.000142336 0.868537866 0.172068316 0.085374977 0.000123542 1.76E-05 0.082543118 0.019998039 4.46E-11 10.35062872 -0.13160447 S(ph)FDHLISDTK ddPTM_HeLa_A486_30min_R1 4 SFDHLISDTK 10 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(1)FDHLISDTK;S(1)FDHLISDTK;S(1)FDHLISDTK;S(1)FDHLISDTK ;;; 243.85 3.50E-21 832020000 3681110 3223840 1669510 981090 2817990 3803590 4241320 4600900 2971390 4661400 TRUE FALSE FALSE 3423083.198 2968371.177 2315988.983 2284027.102 2464531.417 3334341.738 3180096.876 3553375.507 3228952.478 3494155.099 0.979659775 0.849524733 0.662818025 0.653670784 0.705329714 0.95426266 0.91011898 1.01694842 0.924101073 1 21.73651222 -6.27321727 23.85932931 0.95896008 0.762167926 0.506338278 0.09406175 374.2613456 758165.5873 0.036295412 0.032293322 5.33E-07 6.27321727 -0.196792154 S(ph)FDRKTPTFLEIWNDSVDGDSFSSLSSPETGK ddPTM_HeLa_A485_30min_R1 1 SFDRKTPTFLEIWNDSVDGDSFSSLSSPETGK 32 2 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.496)FDRKT(0.441)PT(0.061)FLEIWNDS(0.002)VDGDSFSSLSSPETGK 97.771 8.16E-05 77412000 22837 20041 14205 36695 34456 28294 50918 49548 21707 61347 TRUE FALSE FALSE 27917.01186 22384.62062 19460.02062 38699.55493 31025.43966 29775.43009 40038.95334 37396.27531 26063.39579 46054.32191 0.606175723 0.486048208 0.422544939 0.84030235 0.673670535 0.646528466 0.869385362 0.812003603 0.565927251 1 15.49104893 -4.978322036 0.102979007 1.187948655 3.18E-16 0.457544139 0.128291134 39.0245255 0.849979335 2.607218474 7.921414145 1.05E-05 4.978322036 -1.187948655 S(ph)FDYNYR ddPTM_HeLa_A485_30min_R1 11 SFDYNYR 7 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR ;;;;;;;;;; 177.91 0.00037144 54692710000 11690500 11468210 10847960 13391520 12692290 9519140 12828390 9192870 10779220 15942180 TRUE FALSE FALSE 14291011.39 12809317.4 14861071.83 14123064.83 11428601.04 10017547.45 10087499.68 6938304.219 12942510.58 11968087.92 1.194093116 1.07028938 1.241724821 1.18006025 0.954922885 0.837021546 0.842866442 0.579733727 1.081418408 1 23.51268934 -5.912334839 3.029834763 0.842283231 1.170694783 0.546630772 0.129511949 0.180936279 3.349293893 0.041640688 0.047689023 1.22E-06 5.912334839 0.328411552 S(ph)FDYNYR ddPTM_HeLa_A486_30min_R1 7 SFDYNYR 7 0 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR;S(1)FDYNYR ;;;;;; 176.43 0.00060004 56432600000 6724359 7537500 4577353 2034382 5538318 6406905 6780809 6112350 5950825 7318880 TRUE FALSE FALSE 6253016.159 6940201.049 6349826.667 4736144.108 4843650.514 5616486.202 5084178.868 4720701.337 6466647.302 5486184.81 1.139774976 1.265032311 1.157421211 0.863285557 0.882881398 1.023750821 0.926723952 0.86047071 1.178714813 1 22.38737179 -5.137055312 5.418839756 0.954840996 1.203765577 0.547314322 0.09405651 0.156725613 6.256325166 0.025063661 0.044434257 7.29E-06 5.137055312 0.24892458 S(ph)FDYNYRR ddPTM_HeLa_A485_30min_R1 10 SFDYNYRR 8 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR ;;;;;;;;; 162.36 2.27E-05 48004650000 7979640 14059920 10199560 6332304 11561530 12298480 14826600 18127900 8529530 8320200 TRUE FALSE FALSE 9754683.389 15704105.34 13972801.68 6678221.733 10410423.48 12942409.4 11658775.79 13682004.1 10241328.43 6246127.262 1.561717042 2.514214757 2.237034421 1.069177981 1.666700508 2.072069436 1.866560718 2.19047796 1.639628526 1 22.57453053 -8.018410491 21.22946025 0.999999975 1.899679016 0.334985438 0.382762512 199.1707831 229669.2934 0.38515928 0.099447698 9.58E-09 8.018410491 0.899679041 S(ph)FDYNYRR ddPTM_HeLa_A486_30min_R1 6 SFDYNYRR 8 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.998)FDYNY(0.002)RR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR;S(1)FDYNYRR ;;;;; 157.38 5.50E-05 34574530000 5011160 4567850 3352810 1544530 4647940 3638540 4718050 4655880 3221690 5530950 TRUE FALSE FALSE 4659903.562 4205876.93 4651107.823 3595743.896 4064952.025 3189653.929 3537543.988 3595837.761 3500948.683 4145964.12 1.123961382 1.014450875 1.121839864 0.867287751 0.980460011 0.769339492 0.853250025 0.867310391 0.844423295 1 21.9832762 -5.267308996 24.85365632 0.875690526 1.079520727 0.646194522 0.068820094 254.4615964 1077464.287 0.018697628 0.028604129 5.40E-06 5.267308996 0.203830201 S(ph)FEDRVGTIK ddPTM_HeLa_A485_30min_R1 8 SFEDRVGTIK 10 1 O43399-2;O43399-4;O43399-3;O43399-6;A0A087WZ51;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK ;;;;;;; 157.5 6.85E-07 11841510000 5159274 6519520 4251147 4667820 9013150 7895640 13042230 19325590 7572070 10039880 TRUE FALSE FALSE 6306936.702 7281921.152 5823823.18 4922811.187 8115769.139 8309043.501 10255651.02 14585958.75 9091714.994 7537122.686 0.836783076 0.966140722 0.772685204 0.653141974 1.076772858 1.102415848 1.360685164 1.935215779 1.206258061 1 22.84558245 -6.441288621 1.739081822 1.453199076 0.830717816 0.493198323 0.244606677 0.270918312 1.635648435 0.109620819 0.087577926 3.62E-07 6.441288621 -0.622481259 S(ph)FEDRVGTIK ddPTM_HeLa_A486_30min_R1 6 SFEDRVGTIK 10 1 O43399-2;O43399-4;O43399-3;O43399-6;A0A087WZ51;O43399;O43399-5;O43399-7 O43399-2;O43399 TPD52L2 Tumor protein D54 1 0 S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK;S(1)FEDRVGTIK ;;;;; 167.73 1.75E-07 10204890000 6203970 4892380 2301703 3153690 5644560 6428260 11220340 13355170 3586520 9090140 TRUE FALSE FALSE 5769103.74 4504689.991 3192984.043 7341949.699 4936566.651 5635206.639 8412892.255 10314489.33 3897402.441 6813909.777 0.846665707 0.661102089 0.468597934 1.077494411 0.724483712 0.827015153 1.234664463 1.513740227 0.571977406 1 22.70005141 -6.648586039 5.470059125 1.121136823 0.754968075 0.251063681 0.262404606 0.266401469 11.74247954 0.100843555 0.077153799 2.25E-07 6.648586039 -0.366168748 S(ph)FEEEGEHLGSR ddPTM_HeLa_A485_30min_R1 1 SFEEEGEHLGSR 12 0 Q9BXW6-4;Q9BXW6 Q9BXW6-4 OSBPL1A Oxysterol-binding protein-related protein 1 1 0 S(1)FEEEGEHLGSR 172.82 7.35E-11 246020000 71689 86783 80022 93586 111990 101000 116920 145600 103980 141920 TRUE FALSE FALSE 87635.97073 96931.51694 109625.4678 98698.36621 100839.8824 106288.2038 91939.08685 109891.3717 124847.8322 106541.9558 0.82254892 0.909796673 1.028941762 0.926380274 0.946480488 0.99761829 0.862937855 1.031437529 1.171818475 1 16.70106214 -7.492817565 7.349663543 1.091448222 0.935018506 0.479778062 0.068015691 0.164635864 33.62511987 0.038442006 0.017427909 3.22E-08 7.492817565 -0.156429716 S(ph)FEEEGEHLGSR ddPTM_HeLa_A486_30min_R1 1 SFEEEGEHLGSR 12 0 Q9BXW6-4;Q9BXW6 Q9BXW6-4 OSBPL1A Oxysterol-binding protein-related protein 1 1 0 S(1)FEEEGEHLGSR 199.37 6.01E-16 0 139970 139070 84463 42529 130920 152590 168910 157060 97902 149620 TRUE FALSE FALSE 130158.8258 128049.5867 117169.3356 99009.6613 114498.7928 133764.9972 126646.9315 121300.8666 106388.2242 112154.1781 1.160534792 1.141728189 1.044716635 0.882799579 1.020905282 1.192688489 1.129221698 1.081554594 0.94858904 1 16.77512384 -5.610435761 0.010399702 5.66E-07 2.145268119 0.096640384 0.089576206 11486.17331 31.74737239 3132.324573 3417.085968 2.45E-06 5.610435761 2.145267553 S(ph)FEEKVENLK ddPTM_HeLa_A485_30min_R1 2 SFEEKVENLK 10 1 H0YC42;P55327-2;P55327;P55327-3;E5RK35;P55327-4;P55327-7;P55327-5;P55327-6 H0YC42 TPD52 Tumor protein D52 1 0 S(1)FEEKVENLK;S(1)FEEKVENLK ; 93.348 0.022519 257026000 138128 99169 76805 324207 254090 172540 360438 388559 304768 809630 TRUE FALSE FALSE 168854.0971 110765.9519 105218.3656 341917.6075 228791.9074 181573.9276 283427.4768 293264.296 365932.1421 607804.1411 0.277810047 0.182239548 0.173112288 0.562545702 0.376423739 0.298737563 0.46631383 0.482498022 0.60205602 1 19.21324698 -13.42924548 0.113085142 2.882136842 7.94E-10 0.830850584 0.096040448 55.97807833 0.474795826 24.72901814 1.208509998 3.72E-14 13.42924548 -2.882136841 S(ph)FEEKVENLK ddPTM_HeLa_A486_30min_R1 5 SFEEKVENLK 10 1 H0YC42;P55327-2;P55327;P55327-3;E5RK35;P55327-4;P55327-7;P55327-5;P55327-6 H0YC42 TPD52 Tumor protein D52 1 0 S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK;S(1)FEEKVENLK ;;;; 165.64 2.09E-07 2466571000 1444820 1723724 406536 1228142 1058506 3554020 4814890 5308510 1609520 4619930 TRUE FALSE FALSE 1343545.579 1587129.833 563957.6266 2859176.643 925738.3073 3115561.147 3610153.595 4099878.157 1749034.49 3463069.457 0.387963798 0.458301473 0.162849066 0.825619202 0.26731728 0.899653093 1.042472188 1.183885627 0.505053251 1 21.72361989 -6.324029418 6.754891186 0.948217883 0.431183546 0.549522321 0.228543748 0.18895364 17.05655996 0.078240518 0.069068554 4.74E-07 6.324029418 -0.517034337 GVS(ph)QEKEAQISSAIVSSVQSK ddPTM_HeLa_A485_30min_R1 1 GVSQEKEAQISSAIVSSVQSK 21 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 GVS(1)QEKEAQISSAIVSSVQSK 155.45 2.97E-10 258980000 141540 126630 144570 249940 407920 283100 529600 583330 245180 469220 TRUE FALSE FALSE 173025.0847 141438.277 198052.4591 263593.5893 367306.0525 297922.6782 416446.6336 440267.4029 294385.3771 352252.0894 0.491196759 0.401525729 0.562246371 0.748309513 1.042736335 0.845765539 1.18224035 1.249864561 0.83572358 1 18.42624874 -5.465634661 1.365265494 1.055745832 0.431526533 0.791375698 0.125186076 0.185794024 0.695614808 0.044627627 0.085265652 3.42E-06 5.465634661 -0.6242193 down S(ph)FEERVETTVTSLK ddPTM_HeLa_A486_30min_R1 2 SFEERVETTVTSLK 14 1 E9PNK6;E9PPQ1;J3KNE7;Q16890-5;Q16890 E9PNK6 TPD52L1 Tumor protein D53 1 0 S(1)FEERVETTVTSLK;S(1)FEERVETTVTSLK ; 154.74 1.49E-08 94898000 62856 68792 52903 76126 141498 140208 234392 326600 71857 116678 TRUE FALSE FALSE 58450.11899 63340.67138 73388.45839 177225.1752 123750.0014 122910.5625 175744.6425 252240.3096 78085.62262 87461.06935 0.6682987 0.724215606 0.839098572 2.026332133 1.414915257 1.405317399 2.009404227 2.884029563 0.892804344 1 16.41635337 -5.187398436 5.90978724 1.732870674 0.72503246 0.370769597 0.543143892 0.22907358 14.16645261 0.147429569 0.258254599 6.50E-06 5.187398436 -1.007838215 S(ph)FEMTEFNQALEEIK ddPTM_HeLa_A485_30min_R1 3 SFEMTEFNQALEEIK 15 0 Q9BVS4;Q9BVS4-2;H0Y919 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 1 0 S(1)FEMTEFNQALEEIK;S(1)FEMTEFNQALEEIK;S(1)FEMTEFNQALEEIK ;; 251.04 4.14E-42 84228000 49203.3 36262.9 26024.3 66161 38594.9 38257.9 50797 35272.7 31615.4 88984 TRUE FALSE FALSE 60148.40434 40503.53071 35651.77153 69775.2079 34752.25624 40261.02449 39943.80598 26622.01502 37960.32079 66801.92643 0.900399248 0.606322794 0.533693764 1.044508918 0.520228354 0.602692566 0.597943923 0.398521666 0.568251888 1 16.02760209 -4.257520947 23.87195619 0.634815021 0.900399448 0.119218459 0.196985562 428.0314252 2607453.423 0.048105316 0.350955266 5.53E-05 4.257520947 0.265584427 S(ph)FEMTEFNQALEEIK ddPTM_HeLa_A486_30min_R1 3 SFEMTEFNQALEEIK 15 0 Q9BVS4;Q9BVS4-2;H0Y919 Q9BVS4 RIOK2 Serine/threonine-protein kinase RIO2 1 0 S(1)FEMTEFNQALEEIK;S(1)FEMTEFNQALEEIK;S(0.983)FEMT(0.017)EFNQALEEIK ;; 278.34 2.55E-58 127638000 91098 78422 33992.2 39685.9 51156 89503 93770 75349 66955 133195 TRUE FALSE FALSE 84712.50063 72207.55511 47154.89018 92390.78081 44739.53747 78461.02986 70307.7542 58193.67756 72758.71331 99842.10505 0.848464689 0.723217475 0.472294631 0.925368919 0.448102907 0.785851118 0.704189422 0.582857077 0.728737773 1 16.60736073 -10.92090032 2.014310024 1.21805912 0.68526857 0.28947988 0.144975587 2133015.081 855106.6739 2191345.493 0.035615069 1.20E-11 10.92090032 -0.53279055 S(ph)FEVEEVETPNSTPPR ddPTM_HeLa_A485_30min_R1 4 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR ;;; 287.03 2.89E-59 2252170000 238179 262234 262544 333152 438599 342412 445159 583440 467154 651740 TRUE FALSE FALSE 291161.0968 292899.9852 359669.951 351351.2502 394930.5435 360340.1629 350047.143 440350.4252 560907.5228 489273.2124 0.59508898 0.598643003 0.735110654 0.718108495 0.80717794 0.736480465 0.715443098 0.900009267 1.146409631 1 18.90028077 -7.456322574 2.776278011 1.071185213 0.703228201 0.821722815 0.069950171 0.119288705 1.746113932 0.055873226 0.020652147 3.50E-08 7.456322574 -0.367957012 S(ph)FEVEEVETPNSTPPR ddPTM_HeLa_A486_30min_R1 3 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR ;; 293.77 1.85E-67 1727010000 357300 439510 246638 166107 393280 487020 594880 689310 382440 570630 TRUE FALSE FALSE 332255.1151 404681.6269 342142.8388 386705.4906 343951.1552 426936.4241 446034.732 532369.1605 415590.2071 427740.5338 0.776767897 0.946091368 0.799884069 0.904065572 0.804111671 0.998120099 1.042769382 1.244607697 0.971594166 1 18.7063764 -6.50265172 2.711900013 1.085400099 0.852407434 0.600875428 0.083960371 0.175660704 2.596320082 0.032439477 0.025887834 3.14E-07 6.50265172 -0.232992665 S(ph)FEVEEVETPNSTPPRR ddPTM_HeLa_A485_30min_R1 2 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 S(1)FEVEEVETPNSTPPRR;S(1)FEVEEVETPNSTPPRR ; 229.62 7.49E-35 2421800000 71086 101729 79463 121564 154761 120375 183816 231510 165842 205372 TRUE FALSE FALSE 86898.83546 113625.3216 108859.6704 128204.7335 139352.4514 126677.6489 144542.21 174731.8095 199124.9682 154176.54 0.563632025 0.736981915 0.706071562 0.831545017 0.903849908 0.821640237 0.93751105 1.13332294 1.291538701 1 17.23422373 -6.326944878 0.595813788 1.16170788 0.644025186 0.755211144 0.099786241 0.42815028 0.32876819 0.086685007 0.092326384 4.71E-07 6.326944878 -0.517682694 S(ph)FEVEEVETPNSTPPRR ddPTM_HeLa_A486_30min_R1 2 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 S(1)FEVEEVETPNSTPPRR;S(1)FEVEEVETPNSTPPRR ; 259.18 9.31E-52 2260200000 148483 189225 112416 61779 179529 197397 255680 284780 150427 220830 TRUE FALSE FALSE 138075.1085 174230.1219 155946.4858 143824.6341 157010.7988 173044.1651 191706.1597 219941.8107 163466.1335 165532.7306 0.834125722 1.052541822 0.942088524 0.868859189 0.948518146 1.045377337 1.158116337 1.328690766 0.987515477 1 17.33675698 -6.468685169 2.771122617 1.14456156 0.933128049 0.416761802 0.104149308 0.246296383 3.749818182 0.040876379 0.03339796 3.40E-07 6.468685169 -0.211433511 S(ph)FEVVR ddPTM_HeLa_A486_30min_R1 2 SFEVVR 6 0 Q9UKY7;H0Y8K3;D6R9V8 Q9UKY7 CDV3 Protein CDV3 homolog 1 0 S(1)FEVVR;S(1)FEVVR ; 87.181 0.01687 133783000 242450 243070 161917 100430 207140 239285 288770 268210 189630 333130 TRUE FALSE FALSE 225455.507 223808.248 224615.5987 233806.1155 181158.5697 209764.4496 216516.6917 207144.438 206067.2811 249712.0797 0.902861837 0.896265204 0.89949833 0.936302784 0.725469789 0.84002524 0.86706535 0.82953311 0.825219514 1 17.92990609 S(ph)FFTPGKPK ddPTM_HeLa_A485_30min_R1 1 SFFTPGKPK 9 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 S(0.792)FFT(0.208)PGKPK 78.096 0.0046051 575040000 791240 533820 356910 1118600 841640 742310 1291900 1257300 516700 1328500 TRUE FALSE FALSE 967248.6083 596245.6054 488945.8613 1179706.286 757843.3664 781176.2038 1015875.011 948945.2036 620396.9505 997329.3992 0.96983866 0.597842203 0.490255137 1.182865246 0.759872683 0.783268 1.018595272 0.951486244 0.62205822 1 19.92771055 -5.243854021 24.99792162 0.894485824 0.677165056 0.221170486 0.185617991 1278.737741 1817747.658 0.049714889 0.085869292 5.70E-06 5.243854021 -0.217320769 S(ph)FFTPGKPK ddPTM_HeLa_A486_30min_R1 1 SFFTPGKPK 9 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 S(0.757)FFT(0.243)PGKPK 91.936 0.0015767 461870000 1000200 960100 406380 524270 828060 1165600 1574400 1374300 691820 1578000 TRUE FALSE FALSE 930091.145 884018.1794 563741.2192 1220527.055 724196.9934 1021800.123 1180468.468 1061401.891 751787.5146 1182858.529 0.786308018 0.747357488 0.47659226 1.031845335 0.612243118 0.863839671 0.997979419 0.897319388 0.63556841 1 20.17384611 -5.940115261 1.121460625 0.874647973 0.709572123 0.139132756 0.164959526 1.004135242 2.683982266 0.075332568 0.092877564 1.15E-06 5.940115261 -0.16507585 S(ph)FGHFPGPEFLDVEK ddPTM_HeLa_A485_30min_R1 1 SFGHFPGPEFLDVEK 15 0 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 0 S(1)FGHFPGPEFLDVEK 184.15 5.67E-18 32905000 92596 90107 66140 131150 108890 94989 132970 117840 75041 176430 TRUE FALSE FALSE 113193.6607 100644.2298 90607.93832 138314.3924 98048.52926 99962.47716 104559.8732 88939.55523 90101.04038 132449.248 0.854619128 0.759870149 0.684095529 1.044282203 0.74027245 0.754722875 0.789433499 0.671499134 0.680268418 1 17.01508013 S(ph)FHGLDFGFR ddPTM_HeLa_A485_30min_R1 2 SFHGLDFGFR 10 0 Q9UPV0;Q9UPV0-2 Q9UPV0 CEP164 Centrosomal protein of 164 kDa 1 0 S(1)FHGLDFGFR;S(1)FHGLDFGFR ; 131.06 5.53E-05 12991000 23452 32392 29451 19966.1 23608 26243 24777 31100 22446 28146 TRUE FALSE FALSE 28668.81649 36179.96263 40346.15046 21056.79749 21257.50463 27617.0429 19483.19154 23472.67624 26950.70631 21129.72019 1.356800575 1.71227836 1.909450296 0.996548809 1.006047616 1.307023598 0.922075227 1.110884386 1.275488084 1 14.36698604 -5.270719374 24.99959234 1.0916764 1.664786609 0.701818018 0.170602477 343.9140903 926477.5261 0.048042913 0.072357822 5.36E-06 5.270719374 0.573110209 S(ph)FILDK ddPTM_HeLa_A485_30min_R1 4 SFILDK 6 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 1 0 S(1)FILDK;S(1)FILDK;S(1)FILDK;S(1)FILDK ;;; 128.69 0.00546 610150000 1144380 953320 735600 1228650 1310100 1062780 1382970 1269220 858890 1533190 TRUE FALSE FALSE 1398943.383 1064802.481 1007729.051 1295768.038 1179661.844 1118425.517 1087487.162 957941.8049 1031261.345 1150993.949 1.215422013 0.92511562 0.875529408 1.125781799 1.024907077 0.971704081 0.944824395 0.832273537 0.895974601 1 20.13444882 -6.700243895 2.224368558 0.898673237 1.02231839 0.230315818 0.097376249 0.467431814 4.729559841 0.046379044 0.031657705 1.99E-07 6.700243895 0.123645153 S(ph)FILDK ddPTM_HeLa_A486_30min_R1 4 SFILDK 6 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 1 0 S(1)FILDK;S(1)FILDK;S(1)FILDK;S(1)FILDK ;;; 117.04 0.0072329 881520000 1179990 1180820 677930 461668 1073740 1220560 1474550 1313270 957220 1402190 TRUE FALSE FALSE 1097278.794 1087247.523 940442.6516 1074786.435 939061.517 1069979.717 1105601.994 1014267.089 1040192.6 1051072.497 1.043961094 1.034417251 0.894745752 1.022561658 0.893431728 1.017988502 1.051879862 0.964982998 0.989648766 1 20.00343075 S(ph)FIS(ph)RELK ddPTM_HeLa_A485_30min_R1 1 SFISRELK 8 1 P35408 P35408 PTGER4 Prostaglandin E2 receptor EP4 subtype 2 0 S(1)FIS(1)RELK 79.116 0.0082574 0 357780 366490 347650 480370 538970 434070 577180 599450 393710 660990 TRUE FALSE FALSE 437366.9267 409347.8175 476260.2019 506611.3967 485308.2544 456797.234 453860.7779 452433.9476 472723.9857 496217.3576 0.88140191 0.824936515 0.959781424 1.020946545 0.978015474 0.920558757 0.914641076 0.911765662 0.952655078 1 18.92061268 -4.76939799 24.99951929 0.954322139 0.853169207 0.566160563 0.036385462 124.4416836 390899.1966 0.010477865 0.022456543 1.70E-05 4.76939799 -0.101152931 S(ph)FIS(ph)RELK ddPTM_HeLa_A486_30min_R1 1 SFISRELK 8 1 P35408 P35408 PTGER4 Prostaglandin E2 receptor EP4 subtype 2 0 S(1)FIS(1)RELK 91.906 0.014915 5513200 237570 298760 214830 131170 337290 349130 375840 383150 242140 343840 TRUE FALSE FALSE 220917.5698 275085.1695 298017.9293 305370.389 294983.9431 306057.8903 281800.8568 295915.1091 263128.8902 257740.226 0.857132677 1.067296222 1.156272476 1.184799105 1.144500987 1.187466524 1.093352253 1.148113796 1.020907346 1 17.97555819 -4.290214212 2.926128972 1.127000934 0.820182141 0.613886198 0.061101845 0.219101322 2.809901043 0.015142138 0.153124979 5.13E-05 4.290214212 -0.306818793 S(ph)FKLS(ph)GFS(ph)FKK ddPTM_HeLa_A485_30min_R1 1 SFKLSGFSFKK 11 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 3 0 S(1)FKLS(1)GFS(1)FKK 60.474 0.028962 75978000 51815 28373 20429 104090 58622 46677 129910 106880 56228 260790 TRUE FALSE FALSE 63341.06799 31690.97554 27986.53722 109776.1731 52785.38785 49120.93554 102153.6672 80667.51242 67512.44385 195779.8525 0.323532106 0.161870464 0.142949016 0.560712309 0.269616036 0.250898828 0.521778242 0.412031736 0.344838567 1 17.57887278 -14 0.190739578 3.903316179 0.210544431 0.738687902 0.122225156 69.85048061 0.683754661 76.9126465 0.336547182 1.00E-14 14 -3.692771748 S(ph)FKLS(ph)GFSFK ddPTM_HeLa_A485_30min_R1 1 SFKLSGFSFK 10 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 S(1)FKLS(0.997)GFS(0.003)FK 117.18 0.00044593 677310000 2185300 1096000 709530 3421700 1910200 1337600 2609500 1807400 1478400 5216100 TRUE FALSE FALSE 2671412.446 1224167.666 972014.673 3608618.807 1720013.781 1407634.668 2051959.007 1364132.316 1775101.319 3915822.265 0.682209831 0.312620845 0.248227475 0.921548161 0.439247153 0.359473585 0.524017401 0.348364206 0.453315089 1 21.90088385 -10.75989601 4.735211012 1.038579266 0.471193237 0.410392137 0.188123714 0.069484429 0.003523281 0.16518788 0.043957611 1.74E-11 10.75989601 -0.567386029 S(ph)FKLS(ph)GFSFK ddPTM_HeLa_A486_30min_R1 2 SFKLSGFSFK 10 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 S(1)FKLS(1)GFSFK;S(1)FKLS(1)GFSFK ; 146.1 5.63E-06 1991420000 3770900 3403670 954310 2450970 2107480 4834100 5756300 5923500 2220470 5397800 TRUE FALSE FALSE 3506579.383 3133950.793 1323844.389 5705982.025 1843140.207 4237717.892 4316012.856 4574848.359 2412942.127 4046155.746 0.866644688 0.774550213 0.327185722 1.410223032 0.455528735 1.047344234 1.066694692 1.130665413 0.596354238 1 21.94812042 -5.245919326 24.99817077 0.950861037 0.667969283 0.191259889 0.283985618 1446.873424 2330477.254 0.074279464 0.128077259 5.68E-06 5.245919326 -0.282891754 S(ph)FLEDTTPAR ddPTM_HeLa_A485_30min_R1 4 SFLEDTTPAR 10 0 Q3YEC7;Q3YEC7-2;G3V154;F2Z2T0 Q3YEC7 RABL6 Rab-like protein 6 1 0 S(1)FLEDTTPAR;S(1)FLEDTTPAR;S(1)FLEDTTPAR;S(1)FLEDTTPAR ;;; 123.67 0.00012497 1213560000 587904 687028 597686 606735 733865 551139 657641 573338 567180 746978 TRUE FALSE FALSE 718681.2166 767369.9483 818794.9232 639879.3967 660798.8238 579995.7858 517130.6279 432725.9565 681007.8235 560770.1317 1.281596818 1.368421577 1.460125775 1.141072537 1.178377354 1.034284376 0.922179336 0.771663703 1.214415292 1 19.09704998 -5.851198764 1.273436981 0.962894168 1.365357038 0.63577411 0.120026521 0.266757046 0.909550675 0.049274878 0.064526037 1.41E-06 5.851198764 0.40246287 S(ph)FLEDTTPAR ddPTM_HeLa_A486_30min_R1 3 SFLEDTTPAR 10 0 Q3YEC7;Q3YEC7-2;G3V154;F2Z2T0 Q3YEC7 RABL6 Rab-like protein 6 1 0 S(1)FLEDTTPAR;S(1)FLEDTTPAR;S(1)FLEDTTPAR ;; 150.86 3.57E-06 1147610000 789830 914530 602430 250125 730320 779260 794980 776470 703840 827820 TRUE FALSE FALSE 734466.9957 842059.3121 835707.0296 582303.6406 638716.4556 683122.8241 596067.5956 599684.7312 764849.4179 620528.4838 1.183615281 1.35700348 1.346766589 0.938399535 1.029310454 1.10087263 0.960580555 0.966409676 1.232577453 1 19.24313791 -5.255249518 24.9314513 1.030901008 1.301915969 0.635879421 0.091229779 294.236466 1185119.029 0.024555481 0.041204882 5.56E-06 5.255249518 0.271014961 S(ph)FLESNYFTKPNLK ddPTM_HeLa_A486_30min_R1 1 SFLESNYFTKPNLK 14 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 S(1)FLESNYFTKPNLK 211.29 1.14E-22 260160000 561810 558070 286880 226480 496710 542910 629880 562070 411270 661430 TRUE FALSE FALSE 522430.0202 513846.5007 397967.6189 527256.8857 434408.0002 475931.2841 472277.3618 434098.9309 446919.2147 495803.6228 1.053703515 1.036391178 0.802671866 1.063438953 0.876169476 0.959918932 0.952549235 0.875546105 0.901403689 1 18.91940929 -4.559696369 24.95034857 0.928725955 1.04937579 0.315724073 0.068566231 151.0040806 102331.0714 0.016214302 0.042899249 2.76E-05 4.559696369 0.120649835 S(ph)FNDFR ddPTM_HeLa_A485_30min_R1 2 SFNDFR 6 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 S(1)FNDFR;S(1)FNDFR ; 105.1 0.010321 745590000 1147030 1456980 1324450 1323570 1507690 1387270 1582610 1526730 1145240 1961580 TRUE FALSE FALSE 1402182.866 1627361.137 1814419.17 1395873.278 1357579.09 1459905.312 1244472.445 1152297.074 1375079.163 1472594.206 0.952185511 1.105098153 1.232124344 0.947900835 0.921896259 0.991383306 0.845088511 0.78249464 0.933780099 1 20.4899285 -5.451189622 7.318424637 0.90492949 1.097351237 0.473659554 0.086906812 0.236483006 21.17461547 0.025549117 0.037852831 3.54E-06 5.451189622 0.192421747 S(ph)FNDFR ddPTM_HeLa_A486_30min_R1 4 SFNDFR 6 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 S(1)FNDFR;S(1)FNDFR;S(1)FNDFR;S(1)FNDFR ;;; 104.2 0.010578 1160620000 1919490 2859610 2341530 958042 3110430 2389370 2668810 2595160 2458520 2616260 TRUE FALSE FALSE 1784943.663 2633004.089 3248233.124 2230370.193 2720290.866 2094593.823 2001045.51 2004298.72 2671626.493 1961131.467 0.910160126 1.342594382 1.656305648 1.137287444 1.387102758 1.068053753 1.020352559 1.022011402 1.362288321 1 20.90325482 -6.272224405 24.34987309 1.091280113 1.30202992 0.182762257 0.201802387 859.213215 1939881.07 0.071405844 0.063633618 5.34E-07 6.272224405 0.210749807 S(ph)FPLFDNSK ddPTM_HeLa_A485_30min_R1 2 SFPLFDNSK 9 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 0 S(1)FPLFDNSK;S(1)FPLFDNSK ; 87.568 0.0039644 58107000 114334 107689 94159 136646 136978 134376 152211 154745 103676 190912 TRUE FALSE FALSE 139767.2039 120282.2918 128992.3324 144110.625 123339.9894 141411.7196 119689.8764 116793.5461 124482.8222 143321.1519 0.975202906 0.839250105 0.900022995 1.00550842 0.860584692 0.986677247 0.835116623 0.81490795 0.868558622 1 17.12889202 -6.784814915 24.99893493 0.864221466 0.923050276 0.087636498 0.068378256 465.7851157 498128.5211 0.027474851 0.018536134 1.64E-07 6.784814915 0.05882881 S(ph)FPLFDNSK ddPTM_HeLa_A486_30min_R1 1 SFPLFDNSK 9 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 0 S(1)FPLFDNSK 145.09 0.00010128 28344000 106670 113630 63823 49722 106800 101010 120860 118860 78001 129270 TRUE FALSE FALSE 99192.98384 104625.545 88536.97484 115755.3288 93404.14813 88548.41319 90619.54967 91798.1727 84762.18948 96899.95059 1.023663926 1.079727537 0.913694737 1.194586046 0.963923589 0.91381278 0.935186748 0.947350046 0.874739244 1 16.56420831 -5.983008266 24.99878724 0.931863284 1.049184306 0.390117776 0.070402942 241.9644569 355984.1674 0.020681177 0.023444972 1.04E-06 5.983008266 0.117321022 S(ph)FQDYTGQK ddPTM_HeLa_A485_30min_R1 2 SFQDYTGQK 9 0 A0A087WXU5;A0A087WYV3;A0A0D9SEW3;A0A087WXF8;Q9NP64-2;Q9NP64-3;Q9NP64 A0A087WXU5 ZCCHC17 Nucleolar protein of 40 kDa 1 0 S(1)FQDYTGQK;S(1)FQDYTGQK ; 146.07 9.55E-05 330350000 553420 550130 429410 651170 711190 606580 791040 829120 517340 853810 TRUE FALSE FALSE 676526.3697 614462.918 588266.6282 686741.7683 640381.4265 638339.5908 622027.8418 625777.02 621165.3927 640970.8802 1.055471302 0.958644046 0.917774343 1.071408686 0.999080374 0.995894838 0.970446335 0.976295553 0.9691008 1 19.28989929 -9.103048206 8.779947222 1.000000306 0.989173294 0.003663983 0.042720838 0 0 0.041357424 0.010030649 7.89E-10 9.103048206 -0.010827013 S(ph)FQDYTGQK ddPTM_HeLa_A486_30min_R1 2 SFQDYTGQK 9 0 A0A087WXU5;A0A087WYV3;A0A0D9SEW3;A0A087WXF8;Q9NP64-2;Q9NP64-3;Q9NP64 A0A087WXU5 ZCCHC17 Nucleolar protein of 40 kDa 1 0 S(0.998)FQDY(0.001)T(0.001)GQK;S(1)FQDYTGQK ; 103.14 0.0014183 317190000 610900 649650 388600 272740 635120 686480 780220 804510 515000 835070 TRUE FALSE FALSE 568079.0647 598169.368 539076.3271 634952.5035 555457.3273 601789.0772 585000.7037 621340.6353 559640.6147 625963.0366 0.907528131 0.955598547 0.861195143 1.014361019 0.887364421 0.961381171 0.934561099 0.992615536 0.894047383 1 19.25571794 -13.99999999 0.114291616 1.195458461 0.903662398 0.158663431 0.045648254 292.3214665 2.194339769 13.45029081 0.474269776 1.00E-14 13.99999999 -0.291796063 S(ph)FQGDDSDLLLK ddPTM_HeLa_A485_30min_R1 2 SFQGDDSDLLLK 12 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(1)FQGDDSDLLLK;S(1)FQGDDSDLLLK ; 240.5 8.81E-28 229120000 400110 401490 273060 443900 495480 397190 515830 549960 301960 539420 TRUE FALSE FALSE 489113.0891 448440.763 374076.257 468149.133 446148.2715 417986.2542 405618.7066 415081.4477 362560.6023 404952.5213 1.207828235 1.107390964 0.923753372 1.156059312 1.101729828 1.03218583 1.001645095 1.025012627 0.895316323 1 18.62739324 -6.768980241 1.219295056 0.964470262 1.094006407 0.362540294 0.074698278 0.58542515 1.740997066 0.050962675 0.028970908 1.70E-07 6.768980241 0.129536145 S(ph)FQGDDSDLLLK ddPTM_HeLa_A486_30min_R1 4 SFQGDDSDLLLK 12 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(1)FQGDDSDLLLK;S(1)FQGDDSDLLLK;S(1)FQGDDSDLLLK;S(1)FQGDDSDLLLK ;;; 189.8 3.56E-13 494067000 1222450 1256860 709510 509608 1141280 1288950 1489620 1419700 879660 1510950 TRUE FALSE FALSE 1136762.568 1157261.836 984251.2733 1186393.178 998130.0204 1129932.454 1116901.32 1096465.302 955909.6371 1132598.285 1.003676751 1.02177608 0.869020628 1.047496887 0.881274529 0.997646269 0.986140748 0.968097264 0.843997072 1 20.11120482 S(ph)FQIPR ddPTM_HeLa_A485_30min_R1 1 SFQIPR 6 0 Q9UK61;Q9UK61-3;Q9UK61-4 Q9UK61 FAM208A Protein FAM208A 1 0 S(1)FQIPR 81.296 0.020608 49602000 23746 29554 29617 26236 36006 27664 36888 35268 25425 32595 TRUE FALSE FALSE 29028.21578 33010.08321 40573.56077 27669.20625 32421.11622 29112.44426 29006.57745 26618.4677 30527.56429 24469.66637 1.186293893 1.349020568 1.658116631 1.130755354 1.324951298 1.189736052 1.185409601 1.087814901 1.247567655 1 14.57870681 -6.217776837 0.957422377 1.121901598 1.369821788 0.325582151 0.141027825 0.674318983 1.32108461 0.08209583 0.078487667 6.06E-07 6.217776837 0.24792019 S(ph)FQIPR ddPTM_HeLa_A486_30min_R1 1 SFQIPR 6 0 Q9UK61;Q9UK61-3;Q9UK61-4 Q9UK61 FAM208A Protein FAM208A 1 0 S(1)FQIPR 68.95 0.029354 52632000 54103 70772 59008 22625 76145 54744 68217 72537 58834 69195 TRUE FALSE FALSE 50310.65909 65163.76897 81857.47789 52672.1434 66594.18408 47990.24188 51148.38507 56021.90857 63933.77849 51868.12162 0.969972644 1.256335625 1.578184737 1.015501271 1.283913548 0.925235778 0.986123721 1.08008362 1.23262182 1 15.6625605 -6.247925249 24.85928694 1.046150131 1.231208066 0.206772671 0.171712526 1206.152693 2218722.868 0.058034118 0.057710843 5.65E-07 6.247925249 0.185057935 S(ph)FS(ph)IS(ph)PSRR ddPTM_HeLa_A485_30min_R1 1 SFSISPSRR 9 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 3 0 S(1)FS(0.988)IS(0.911)PS(0.101)RR 60.157 0.027375 397860000 518890 608130 572460 919130 827960 700540 928230 901980 603230 1218500 TRUE FALSE FALSE 634315.2904 679245.5135 784236.776 969339.7445 745525.3953 737219.1912 729906.0776 680767.9908 724292.7278 914750.3748 0.693429932 0.742547401 0.857323263 1.059676794 0.815004198 0.805923902 0.797929247 0.744211765 0.791792764 1 19.80301858 -11.54385779 2.100854668 3.554440941 0.816062773 0.265332667 0.093636474 3153999.798 159750.5021 38763015.35 0.025554825 2.86E-12 11.54385779 -2.738378168 S(ph)FS(ph)IS(ph)PSRR ddPTM_HeLa_A486_30min_R1 1 SFSISPSRR 9 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 3 0 S(1)FS(0.99)IS(0.977)PS(0.033)RR 69.578 0.013258 527720000 808840 887250 619610 480180 982800 933040 1034600 1017200 865780 1221400 TRUE FALSE FALSE 752144.4929 816941.0787 859539.5857 1117883.307 859528.0598 817931.0113 775732.1371 785605.7653 940826.5075 915553.49 0.821518897 0.892292026 0.938819627 1.220991803 0.938807038 0.893373266 0.847282158 0.858066485 1.027604086 1 19.80428465 -5.994415213 24.98814559 0.912028136 0.975736052 0.024808188 0.1099126 487.4023514 2180770.996 0.036403089 0.041154826 1.01E-06 5.994415213 0.063707917 S(ph)FS(ph)ISPVR ddPTM_HeLa_A486_30min_R1 1 SFSISPVR 8 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(1)FS(0.543)IS(0.457)PVR 91.658 0.0076521 100150000 184390 203460 158800 56812 197860 163500 158930 166750 151860 166790 TRUE FALSE FALSE 171465.2132 187337.0886 220291.6128 132261.2071 173042.5538 143329.0323 119164.033 128784.6651 165023.3471 125024.6984 1.371450725 1.498400644 1.761984757 1.057880633 1.384066957 1.146405744 0.953123939 1.030073792 1.319925976 1 16.9318536 -5.274718288 24.88887715 1.132837552 1.539390909 0.598943854 0.156158993 502.804425 942413.6061 0.045289099 0.067627759 5.31E-06 5.274718288 0.406553357 S(ph)FSEDTLMDGPAR ddPTM_HeLa_A486_30min_R1 2 SFSEDTLMDGPAR 13 0 Q9BRG2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 S(1)FSEDTLMDGPAR;S(1)FSEDTLMDGPAR ; 163.33 1.98E-07 0 96984 105850 73770 47898 109334 107128 119851 122248 79262 116935 TRUE FALSE FALSE 90185.92243 97462.0605 102335.7196 111508.9646 95620.31022 93911.63656 89863.01215 94414.79906 86132.49398 87653.71488 1.028888765 1.111898801 1.167500086 1.272153323 1.090887139 1.071393685 1.025204833 1.077134029 0.982645106 1 16.41952762 -6.275802616 2.503309959 1.030466245 1.145701688 0.42484823 0.062175572 0.313703575 3.88496967 0.025269805 0.023155251 5.30E-07 6.275802616 0.115235443 S(ph)FSEDVISHK ddPTM_HeLa_A485_30min_R1 4 SFSEDVISHK 10 0 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 S(0.999)FS(0.001)EDVISHK;S(0.999)FS(0.001)EDVISHK;S(0.988)FS(0.012)EDVISHK;S(1)FSEDVISHK ;;; 268.14 3.18E-27 1599280000 2022330 1456520 1447650 2926340 2355710 1603660 2222700 1685580 1973690 4212120 TRUE FALSE FALSE 2472190.332 1626847.344 1983195.977 3086198.544 2121167.241 1687625.158 1747801.987 1272188.862 2369791.479 3162116.002 0.781815193 0.514480602 0.627173695 0.975991565 0.67080627 0.533701217 0.552731774 0.402322009 0.749432177 1 21.59245886 -8.013316491 24.54084847 1.000000018 0.631365816 0.35796626 0.149939971 644.853043 1188395.437 0.1535253 0.039640062 9.70E-09 8.013316491 -0.368634202 S(ph)FSEDVISHK ddPTM_HeLa_A486_30min_R1 5 SFSEDVISHK 10 0 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 S(0.991)FS(0.009)EDVISHK;S(0.994)FS(0.006)EDVISHK;S(0.998)FS(0.002)EDVISHK;S(0.998)FS(0.002)EDVISHK;S(0.999)FS(0.001)EDVISHK ;;;; 272.65 7.29E-34 1897188000 2578780 3219990 1940570 969163 3110950 3298350 3497280 3327010 2695100 3204810 TRUE FALSE FALSE 2398020.839 2964826.265 2692010.674 2256260.443 2720745.643 2891433.112 2622223.554 2569522.451 2928713.438 2402304.716 0.998216764 1.234159116 1.120595009 0.939206599 1.132556426 1.203607974 1.091544938 1.069607213 1.219126541 1 21.19598773 -5.013418204 24.91242548 1.097079516 1.131485224 0.007337055 0.095361659 3008.89952 5586400.275 0.0254731 0.046868164 9.70E-06 5.013418204 0.034405708 S(ph)FSEDVISHKGDLR ddPTM_HeLa_A485_30min_R1 3 SFSEDVISHKGDLR 14 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 S(0.779)FS(0.221)EDVISHKGDLR;S(0.79)FS(0.21)EDVISHKGDLR;S(0.713)FS(0.287)EDVISHKGDLR ;; 156.11 1.34E-08 313876000 256855 492613 245588 131808 326198 493837 501140 765510 244248 200660 TRUE FALSE FALSE 313991.5086 550219.8052 336441.221 139008.3373 293720.5818 519693.5417 394067.3451 577767.4722 293266.3332 150639.1549 2.084395049 3.652568322 2.233424778 0.922790209 1.949828927 3.449923376 2.615968905 3.835440213 1.946813453 1 17.20073729 -6.220870386 24.98016071 2.749741405 2.185433611 0.025241232 0.959580899 1512.680834 931426.0563 0.320508942 0.320505715 6.01E-07 6.220870386 -0.564307794 S(ph)FSEHDLAQLR ddPTM_HeLa_A486_30min_R1 1 SFSEHDLAQLR 11 0 Q8WWL2-4;Q8WWL2-3;Q8WWL2-2;Q8WWL2 Q8WWL2-4 SPIRE2 Protein spire homolog 2 1 0 S(0.579)FS(0.421)EHDLAQLR 110.38 0.00040088 77189000 119760 138370 111670 32276 150550 117610 127490 131510 118400 125700 TRUE FALSE FALSE 111365.4424 127405.0573 154911.6146 75140.15914 131666.6152 103100.474 95590.65355 101568.0438 128663.0073 94223.90183 1.181923485 1.352152212 1.64407981 0.797463888 1.397380204 1.094207223 1.014505361 1.077943514 1.365502859 1 16.52380546 -5.252960715 24.99522283 1.117710224 1.388661842 0.311253288 0.194454895 806.2099215 2376713.457 0.051590655 0.087585078 5.59E-06 5.252960715 0.270951618 S(ph)FSIS(ph)PSRR ddPTM_HeLa_A486_30min_R1 1 SFSISPSRR 9 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(0.689)FS(0.312)IS(0.962)PS(0.038)RR 51.135 0.0068054 0 155350 151830 160390 56284 219810 157270 172110 176210 147600 169800 TRUE FALSE FALSE 144460.7672 139798.4378 222497.3034 131031.9964 192239.3802 137867.6264 129046.2576 136090.8296 160394.0868 127280.9748 1.134975337 1.098345122 1.748079819 1.029470403 1.510354399 1.083175444 1.013869181 1.069215803 1.260157593 1 16.95765726 -6.326500165 24.44310855 1.085145772 1.302198504 0.21824834 0.207185034 258.8097486 97232.70847 0.071173284 0.062768947 4.72E-07 6.326500165 0.217052733 S(ph)FSIS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 SFSISPVR 8 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(0.998)FS(0.116)IS(0.886)PVR;S(0.996)FS(0.016)IS(0.988)PVR ; 111.27 0.002437 211270000 326180 406660 422720 400740 448680 336110 395660 379120 330860 478280 TRUE FALSE FALSE 398737.6157 454215.3495 579101.7188 422631.4115 404007.8438 353708.1999 311124.0088 286140.2256 397260.5672 359053.5981 1.110523938 1.265034947 1.612855913 1.177070537 1.125202048 0.985112534 0.866511324 0.796929002 1.106410211 1 18.45383969 -5.951946037 1.847535362 0.929908734 1.322422016 0.56258248 0.142824076 0.248180504 1.723270786 0.054648861 0.062304874 1.12E-06 5.951946037 0.392513283 S(ph)FSIS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 SFSISPVR 8 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(1)FS(0.008)IS(0.992)PVR 129.69 0.0011613 120870000 233610 270220 221960 90908 251100 223200 225500 234700 196380 220860 TRUE FALSE FALSE 217235.1454 248806.7831 307908.8563 211638.4182 219604.6966 195663.8533 169077.5149 181263.9335 213402.3765 165555.2184 1.312161268 1.502862824 1.859855939 1.278355465 1.326474023 1.181864608 1.02127566 1.094885049 1.289010268 1 17.33695296 -5.835372718 1.654717042 1.117920218 1.542465944 0.563674933 0.158802605 0.27455301 1.554951496 0.059923824 0.075654215 1.46E-06 5.835372718 0.424545726 S(ph)FSKEVEER ddPTM_HeLa_A485_30min_R1 12 SFSKEVEER 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(1)FSKEVEER;S(1)FSKEVEER;S(0.997)FS(0.003)KEVEER;S(0.993)FS(0.007)KEVEER;S(0.5)FS(0.5)KEVEER;S(0.998)FS(0.002)KEVEER;S(0.999)FS(0.001)KEVEER;S(0.994)FS(0.006)KEVEER;S(0.5)FS(0.5)KEVEER;S(0.572)FS(0.428)KEVEER;S(0.5)FS(0.5)KEVEER;S(0.623)FS(0.377)KEVEER ;;;;;;;;;;; 149.23 3.73E-05 25752770000 5719010 6808240 6298350 9677120 13179560 11973760 19052750 22550620 8256740 15140760 TRUE FALSE FALSE 6991184.044 7604404.444 8628371.761 10205756.56 11867356.73 12600687.56 14981974.32 17020045.09 9913791.983 11366447.18 0.615072057 0.669022107 0.759108948 0.897884484 1.04406914 1.108586295 1.318087709 1.497393585 0.872197955 1 23.43827804 -5.57266965 1.106680264 1.206218735 0.630661021 0.628033338 0.16136663 0.313805733 0.79410318 0.065208786 0.121854377 2.68E-06 5.57266965 -0.575557714 S(ph)FSKEVEER ddPTM_HeLa_A486_30min_R1 8 SFSKEVEER 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.569)FS(0.431)KEVEER;S(0.997)FS(0.003)KEVEER;S(0.998)FS(0.002)KEVEER;S(0.998)FS(0.002)KEVEER;S(0.996)FS(0.004)KEVEER;S(1)FSKEVEER;S(1)FSKEVEER;S(0.5)FS(0.5)KEVEER ;;;;;;; 145.31 4.85E-05 11893330000 10576275 10825444 7353442 6928098 16183890 13417000 20182490 21257940 9981101 18113640 TRUE FALSE FALSE 9834932.738 9967596.392 10200891.67 16128962.27 14153955.61 11761746.95 15132617.53 16417971.12 10846270.87 13577866.64 0.724335641 0.734106223 0.75128825 1.187886337 1.042428533 0.866244106 1.114506272 1.209171628 0.798819959 1 23.69475349 -5.201949676 9.344027688 1.036972043 0.73547462 0.555031606 0.120855537 0.361375889 54.72205485 0.032581266 0.056494615 6.28E-06 5.201949676 -0.301497424 S(ph)FSLDEPPLFIPDNIATIR ddPTM_HeLa_A485_30min_R1 2 SFSLDEPPLFIPDNIATIR 19 0 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 0 S(0.999)FS(0.001)LDEPPLFIPDNIATIR;S(0.891)FS(0.109)LDEPPLFIPDNIATIR ; 245.04 8.10E-46 186531000 162752 203154 181398 150076 225892 169552 185410 154335 165928 197459 TRUE FALSE FALSE 198955.6209 226911.0931 248504.6688 158274.2719 203401.3993 178429.4805 145795.6388 116484.0993 199228.2276 148236.1053 1.34215359 1.530741061 1.676411211 1.06771742 1.372144789 1.203684354 0.983536626 0.785801132 1.343992594 1 17.17753736 -5.939223755 0.941200356 1.017435739 1.498805085 0.467560157 0.189365101 0.482584985 0.930726934 0.09846144 0.127334307 1.15E-06 5.939223755 0.481369347 S(ph)FSLDEPPLFIPDNIATIR ddPTM_HeLa_A486_30min_R1 2 SFSLDEPPLFIPDNIATIR 19 0 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 1 0 S(0.885)FS(0.115)LDEPPLFIPDNIATIR;S(0.849)FS(0.151)LDEPPLFIPDNIATIR ; 156.49 5.30E-09 175914000 138646 137985 108032 56910 121438 107853 130841 136182 114395 128935 TRUE FALSE FALSE 128927.6314 127050.5661 149864.8836 132489.3561 106206.1137 94547.19343 98103.19791 105176.3314 124310.8507 96648.83677 1.333980166 1.314558667 1.550612388 1.370832392 1.098886621 0.978254851 1.015047891 1.088231736 1.286211556 1 16.56046475 -5.759113288 4.849458467 1.071803896 1.401659842 0.709219973 0.098929604 0.105032632 6.525298051 0.031821856 0.038958672 1.74E-06 5.759113288 0.329855946 S(ph)FSSQRPGMER ddPTM_HeLa_A486_30min_R1 1 SFSSQRPGMER 11 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 S(0.436)FS(0.436)S(0.128)QRPGMER 57.267 0.0071626 0 123730 126520 109100 44264 141190 123980 143250 138970 111200 130460 TRUE FALSE FALSE 115057.1659 116494.0944 151346.4418 103048.829 123480.6337 108684.6081 107407.3349 107329.5647 120838.9055 97791.96685 1.17655028 1.191244007 1.547636751 1.053755562 1.262686882 1.111385849 1.098324723 1.097529461 1.235673128 1 16.57742834 S(ph)FSSQRPVVDR ddPTM_HeLa_A485_30min_R1 2 SFSSQRPVVDR 11 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.626)FS(0.367)S(0.007)QRPVVDR;S(0.571)FS(0.41)S(0.019)QRPVVDR ; 112.15 0.00023342 588130000 500810 614550 592900 565900 836850 621840 779210 846290 644960 799190 TRUE FALSE FALSE 612213.4567 686416.2766 812238.3826 596813.6841 753530.2756 654398.5809 612725.4179 638736.0506 774397.5561 599966.641 1.020412494 1.144090737 1.353805907 0.99474478 1.255953622 1.090724944 1.021265811 1.064619275 1.290734356 1 19.19452276 S(ph)FSSQRPVVDR ddPTM_HeLa_A486_30min_R1 1 SFSSQRPVVDR 11 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.513)FS(0.375)S(0.112)QRPVVDR 105.19 0.00036217 339710000 351660 397990 335780 139620 463520 396250 464790 440900 358560 449900 TRUE FALSE FALSE 327010.45 366451.8229 465803.0085 325042.416 405380.9994 347364.7038 348494.626 340516.6948 389640.2695 337242.1116 0.969660783 1.086613475 1.381212466 0.963825112 1.202047388 1.030015801 1.033366279 1.009709888 1.155372523 1 18.36342517 -6.299308096 24.24843984 1.045529332 1.124540539 0.09141005 0.117878555 1009.03009 646107.2952 0.041203386 0.036338587 5.02E-07 6.299308096 0.079011207 S(ph)FSTGSDLGHWVTTPPDIPGSR ddPTM_HeLa_A486_30min_R1 1 SFSTGSDLGHWVTTPPDIPGSR 22 0 Q96AG3-3;Q96AG3 Q96AG3-3 SLC25A46 Solute carrier family 25 member 46 1 0 S(0.493)FS(0.385)T(0.061)GS(0.061)DLGHWVTTPPDIPGSR 163.18 6.75E-14 57223000 32786 31907 29537 6574.7 40266 31383 32789 37048 39411 35502 TRUE FALSE FALSE 30487.87071 29378.57312 40974.51743 15306.23387 35215.46281 27511.28454 24584.84539 28612.97915 42827.17721 26612.06812 1.145640789 1.103956783 1.539696849 0.575161382 1.323289218 1.033789798 0.92382318 1.075188107 1.609314128 1 14.69979301 -10.75703038 4.832700065 0.991010952 1.134249589 0.022086237 0.282364395 0.02767648 0.001391466 0.276688619 0.063519042 1.75E-11 10.75703038 0.143238636 S(ph)FTCSEKPMAR ddPTM_HeLa_A485_30min_R1 2 SFTCSEKPMAR 11 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.983)FT(0.015)CS(0.002)EKPMAR;S(0.996)FT(0.003)CSEKPMAR ; 110.31 0.0025258 979630000 1081425 956031 887018 942375 1187450 833394 998240 953700 655180 886920 TRUE FALSE FALSE 1321984.26 1067830.509 1215162.87 993854.56 1069223.309 877029.2212 784957.8691 719803.5797 786668.6163 665827.1666 1.985476602 1.603765305 1.82504249 1.492661474 1.605857139 1.317202519 1.178921361 1.081066703 1.181490717 1 19.34478821 -6.053206525 0.518806128 1.006092286 1.913988296 0.886045443 0.105339266 0.323033518 0.183409684 0.086179587 0.135049666 8.85E-07 6.053206525 0.907896009 S(ph)FTCSEKPMAR ddPTM_HeLa_A486_30min_R1 2 SFTCSEKPMAR 11 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.998)FT(0.002)CSEKPMAR;S(0.991)FT(0.009)CS(0.001)EKPMAR ; 91.712 0.001241 1510220000 1907790 1701670 1144550 666200 1865300 1554440 1728420 1533040 1088470 1279010 TRUE FALSE FALSE 1774063.773 1566823.472 1587750.412 1550947.268 1631336.681 1362668.997 1295951.035 1184000.258 1182819.456 958737.571 1.85041645 1.63425688 1.65608448 1.617697392 1.701546628 1.421315945 1.351726556 1.234957609 1.233725987 1 19.87077644 -6.942455759 0.491758912 1.002974563 1.766670669 0.928323292 0.067202807 0.232763031 0.124887832 0.068509528 0.056190524 1.14E-07 6.942455759 0.763696106 S(ph)FTGGLGQLVVPSK ddPTM_HeLa_A485_30min_R1 2 SFTGGLGQLVVPSK 14 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 S(0.998)FT(0.002)GGLGQLVVPSK;S(0.998)FT(0.002)GGLGQLVVPSK ; 213.02 1.38E-22 674750000 836850 757310 510520 611890 822250 826010 1056240 1084700 631670 916110 TRUE FALSE FALSE 1023004.395 845870.8168 699382.5925 645316.0013 740383.9029 869258.6063 830565.6953 818675.6243 758440.375 687740.6368 1.487485748 1.229927056 1.016927829 0.938313031 1.076545231 1.263933756 1.207672851 1.190384253 1.102800001 1 19.39150507 -4.356922868 3.11420673 1.109889573 1.509265656 0.598705751 0.096248281 0.228431242 3.534834698 0.027821693 0.193925006 4.40E-05 4.356922868 0.399376084 S(ph)FTGGLGQLVVPSK ddPTM_HeLa_A486_30min_R1 2 SFTGGLGQLVVPSK 14 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 S(0.994)FT(0.006)GGLGQLVVPSK;S(1)FTGGLGQLVVPSK ; 276.99 5.94E-49 1178320000 994790 1097070 682470 425960 976450 901190 1225530 1097970 853230 1106700 TRUE FALSE FALSE 925060.3581 1010134.178 946740.6612 991656.4068 853974.536 790010.3404 918889.4317 847986.1995 927188.6634 829575.1166 1.115101381 1.217652455 1.141235606 1.195378679 1.029411947 0.952307181 1.107662722 1.022193389 1.117666917 1 19.6620131 -5.766049954 24.99765492 1.038494471 1.169070895 0.596621983 0.052010194 78.07898827 423329.3788 0.015540376 0.018202272 1.71E-06 5.766049954 0.130576424 S(ph)FTLDDESLK ddPTM_HeLa_A485_30min_R1 4 SFTLDDESLK 10 0 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(1)FTLDDESLK;S(0.998)FT(0.002)LDDESLK;S(1)FTLDDESLK;S(0.998)FT(0.002)LDDESLK ;;; 168.22 3.45E-07 264853000 489513 347336 284217 661790 508138 344008 557698 433393 356134 854120 TRUE FALSE FALSE 598403.4781 387953.9238 389360.6956 697941.912 457545.9965 362019.7269 438541.2663 327102.6872 427606.8271 641203.6029 0.933250336 0.60504015 0.607234104 1.088487196 0.713573652 0.564594031 0.683934501 0.510138567 0.66688151 1 19.29042301 -4.244497428 23.19101784 0.702737917 0.933250842 0.11602027 0.177134979 2665.977605 3649167.348 0.044610003 1.095600226 5.70E-05 4.244497428 0.230512925 S(ph)FTLDDESLK ddPTM_HeLa_A486_30min_R1 4 SFTLDDESLK 10 0 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(0.999)FT(0.001)LDDESLK;S(1)FTLDDESLK;S(1)FTLDDESLK;S(1)FTLDDESLK ;;; 227.81 2.71E-17 358594000 644620 722760 366212 318690 625530 743870 904480 832950 532630 924540 TRUE FALSE FALSE 599435.4668 665485.8654 508019.0939 741926.4257 547070.1946 652098.8825 678169.5374 643305.4682 578798.7973 693029.1663 0.864949841 0.96025665 0.733041434 1.070555846 0.789389857 0.940940027 0.978558437 0.928251652 0.83517235 1 19.40255654 S(ph)FTPDHVVYAR ddPTM_HeLa_A486_30min_R1 2 SFTPDHVVYAR 11 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 S(0.986)FT(0.014)PDHVVYAR;S(0.535)FT(0.465)PDHVVYAR ; 134.49 2.73E-05 1318170000 912350 1006840 743448 253727 1007330 947000 1045200 1081910 780117 838040 TRUE FALSE FALSE 848398.9764 927054.3316 1031330.976 590689.2787 880981.2784 830168.7684 783679.905 835582.7109 847738.1697 628189.3293 1.350546622 1.475756254 1.641751822 0.940304541 1.402413631 1.321526377 1.247521835 1.330144706 1.349494699 1 19.26083991 -13.83045643 0.125218441 1.89E-13 1.485082726 0.283802193 0.166339863 196.62942 1.63710851 50.72114071 1.452652697 1.48E-14 13.83045643 1.485082726 S(ph)FTSLYK ddPTM_HeLa_A485_30min_R1 1 SFTSLYK 7 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.939)FT(0.048)S(0.012)LYK 87.181 0.0074606 88955000 118960 103080 98360 142480 147110 124170 158970 144550 114240 191150 TRUE FALSE FALSE 145422.2416 115134.3093 134747.4571 150263.3216 132463.2119 130671.3492 125004.7608 109098.8859 137166.9201 143499.8229 1.013396663 0.802330672 0.939007829 1.047132454 0.923089724 0.910602861 0.871114391 0.76027192 0.955868219 1 17.13068943 -6.447320423 2.86015341 0.877895252 0.94229656 0.05107903 0.084208739 0.660808003 10.5927173 0.033436144 0.027741943 3.57E-07 6.447320423 0.064401308 S(ph)FTSLYK ddPTM_HeLa_A486_30min_R1 2 SFTSLYK 7 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.999)FT(0.001)SLYK;S(0.992)FT(0.007)SLYK ; 144.12 0.0013238 191120000 389920 499230 293100 181170 481460 516650 586470 594240 404420 546450 TRUE FALSE FALSE 362588.6215 459669.1966 406596.1695 421772.9158 421070.7974 452910.9759 439729.003 458944.5242 439475.4512 409615.3632 0.885192925 1.122197158 0.992629198 1.029680412 1.02796632 1.105698215 1.073516871 1.120428005 1.072897871 1 18.6439103 -6.129872373 4.875232131 1.081774757 1.016104662 0.202242386 0.061697634 0.362836739 12.85238735 0.019389387 0.019480356 7.42E-07 6.129872373 -0.065670095 S(ph)FTSSYAISAANHVK ddPTM_HeLa_A485_30min_R1 3 SFTSSYAISAANHVK 15 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(1)FTSSYAISAANHVK;S(0.984)FT(0.01)S(0.003)S(0.003)YAISAANHVK;S(0.997)FT(0.002)S(0.001)S(0.001)YAISAANHVK ;; 228.55 4.30E-34 1065760000 708280 661520 678000 748960 965250 679950 916670 889650 857540 1208150 TRUE FALSE FALSE 865834.4425 738879.0095 928820.4139 789873.7883 869146.3208 715551.1306 720815.966 671461.9426 1029640.412 906980.4394 0.954634086 0.814658153 1.024079874 0.870882936 0.958285629 0.788937776 0.794742571 0.740326818 1.135239932 1 19.79071191 -7.772655467 24.99998527 1.067620012 0.869707676 0.442814102 0.089414266 230.9202216 514690.3386 0.084776064 0.02269489 1.69E-08 7.772655467 -0.197912336 S(ph)FTSSYAISAANHVK ddPTM_HeLa_A486_30min_R1 3 SFTSSYAISAANHVK 15 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.999)FT(0.001)SSYAISAANHVK;S(0.999)FT(0.001)SSYAISAANHVK;S(0.994)FT(0.005)S(0.001)SYAISAANHVK ;; 284.24 8.76E-59 1671610000 1049280 1035080 619510 187890 910380 1124560 1188290 1368280 1047620 1179750 TRUE FALSE FALSE 975730.8905 953056.4911 859400.8631 437417.4154 796191.6514 985823.2209 890967.2736 1056752.513 1138428.545 884332.9211 1.103352445 1.077712328 0.971806932 0.494629799 0.900330218 1.11476481 1.007502098 1.19497136 1.287330278 1 19.75423007 -6.268982534 6.620590993 1.126689924 0.898957971 0.267963191 0.174155658 0.220261396 53.96467255 0.066040615 0.061124685 5.38E-07 6.268982534 -0.227731953 S(ph)FVLNLGK ddPTM_HeLa_A485_30min_R1 2 SFVLNLGK 8 0 P09382 P09382 LGALS1 Galectin-1 1 0 S(1)FVLNLGK;S(1)FVLNLGK ; 107.83 0.0013257 270240000 355740 349280 304710 387710 496410 448720 600110 601820 334350 505530 TRUE FALSE FALSE 434873.1357 390125.2577 417434.909 408889.6156 446985.6774 472214.2853 471891.5961 454222.7014 401450.9782 379510.6746 1.145878535 1.027969129 1.099929296 1.077412687 1.177794743 1.244271418 1.243421141 1.196864098 1.057812086 1 18.53378094 -5.762007057 24.99979506 1.172252365 1.084390515 0.117740575 0.078044823 23.3047822 1026343.725 0.023399077 0.028176325 1.73E-06 5.762007057 -0.087861849 S(ph)FVLNLGK ddPTM_HeLa_A486_30min_R1 2 SFVLNLGK 8 0 P09382 P09382 LGALS1 Galectin-1 1 0 S(1)FVLNLGK;S(1)FVLNLGK ; 116.77 0.00092136 327700000 338320 415050 311150 226591 471070 502360 591000 544070 349930 455500 TRUE FALSE FALSE 314605.5151 382159.9264 431635.6129 527515.2993 411984.008 440383.9308 443125.549 420197.138 380262.2142 341439.8352 0.92140835 1.119259931 1.264163019 1.54497292 1.206607916 1.289784862 1.297814442 1.230662315 1.113701961 1 18.38127186 -10.1000388 13.43395561 1 1.232893899 0.156022318 0.151875248 0 0 0.154929023 0.037575807 7.94E-11 10.1000388 0.232893899 S(ph)FYPEEVSSMVLTK ddPTM_HeLa_A486_30min_R1 1 SFYPEEVSSMVLTK 14 0 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 S(0.999)FY(0.001)PEEVSSMVLTK 83.729 0.0018028 0 29117 37212 24961 20045 51875 43237 56246 58855 32732 44315 TRUE FALSE FALSE 27076.04866 34263.1856 34626.56768 46665.77302 45368.35378 37902.85854 42172.65589 45455.0013 35569.23611 33218.23556 0.815095932 1.03145712 1.042396355 1.404823954 1.365766514 1.141025642 1.269563394 1.368374946 1.070774396 1 15.01968782 -4.730901321 1.801484257 1.246891378 0.844983505 0.468647846 0.134432209 0.337279043 1.95798661 0.03746621 0.170219065 1.86E-05 4.730901321 -0.401907873 S(ph)GAQASSTPLSPTR ddPTM_HeLa_A485_30min_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(1)GAQASSTPLSPTR 127.66 2.48E-05 575130000 295530 296750 266550 230590 381040 292750 366130 454890 272830 361220 TRUE FALSE FALSE 361269.6289 331452.3311 365157.9371 243186.5478 343102.3197 308077.9373 287903.3345 343327.5143 327584.4785 271174.5018 1.332240408 1.222284282 1.346579176 0.896789876 1.265245506 1.13608741 1.061690287 1.266075948 1.208020947 1 18.048862 S(ph)GAQASSTPLSPTR ddPTM_HeLa_A486_30min_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.999)GAQAS(0.001)STPLSPTR 147.75 7.20E-08 464870000 353210 333780 241740 55505 450240 329800 373890 421600 300620 254190 TRUE FALSE FALSE 328451.803 307330.0572 335348.202 129218.4451 393766.7009 289112.6292 280338.7674 325610.8835 326677.9836 190539.1695 1.723802008 1.612949495 1.759996136 0.678172606 2.066591882 1.51733961 1.471292061 1.70889211 1.714492535 1 17.53972808 -10.10106735 3.71525669 0.999760988 1.575759388 0.209477589 0.339870413 83009079.56 143426172.2 265071.4871 0.080748795 7.92E-11 10.10106735 0.5759984 S(ph)GASEANLIVAK ddPTM_HeLa_A485_30min_R1 4 SGASEANLIVAK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(0.999)GAS(0.001)EANLIVAK;S(0.999)GAS(0.001)EANLIVAK;S(0.994)GAS(0.006)EANLIVAK;S(0.995)GAS(0.005)EANLIVAK ;;; 207.64 2.54E-17 871411000 541724 522287 393490 735601 659096 451592 650139 601734 489790 1010800 TRUE FALSE FALSE 662228.6349 583363.9214 539058.3255 775785.02 593474.088 475236.6588 511231.4915 454157.793 588086.3604 758826.1624 0.872701374 0.768771492 0.710384476 1.022348805 0.782094922 0.626278695 0.673713581 0.598500441 0.77499484 1 19.53340989 -6.005492042 24.93821735 0.705613896 0.837888622 0.116572127 0.129047999 401.7933795 1824471.554 0.039375093 0.043342562 9.87E-07 6.005492042 0.132274726 S(ph)GASEANLIVAK ddPTM_HeLa_A486_30min_R1 2 SGASEANLIVAK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(1)GASEANLIVAK;S(0.863)GAS(0.137)EANLIVAK ; 191.01 2.95E-13 484560000 276913 284577 164871 86253 222060 256424 320777 282860 220325 292129 TRUE FALSE FALSE 257502.8287 262026.0821 228713.4666 200801.343 194207.1642 224789.014 240515.2018 218458.9528 239422.9484 218977.997 1.175930149 1.19658635 1.044458666 0.91699324 0.886879809 1.026536991 1.098353283 0.997629697 1.093365323 1 17.74042639 -4.839867328 4.360429454 1.001576653 1.187234691 0.569228767 0.062708754 0.153716311 5.410720171 0.018368744 0.042217594 1.45E-05 4.839867328 0.185658038 S(ph)GCAARPPR ddPTM_HeLa_A485_30min_R1 1 SGCAARPPR 9 1 A0A494C1K9 A0A494C1K9 1 0 S(1)GCAARPPR 40.589 0.036786 74212000 50427 82451 44967 32697 30845 83553 42725 56695 68203 34771 TRUE FALSE FALSE 61644.31218 92092.92722 61602.16453 34483.15432 27773.9635 87927.70588 33596.45472 42790.46236 81890.71651 26103.22961 2.361558822 3.528028086 2.35994417 1.321030188 1.064004873 3.368460807 1.287061226 1.639278472 3.13718715 1 14.67194069 -4.996578424 21.13773364 1.865032438 2.944594376 0.231119355 0.814240758 21.20545514 130961.1264 0.208408694 0.428363085 1.01E-05 4.996578424 1.079561938 S(ph)GDEEFKGEDELCDSGR ddPTM_HeLa_A485_30min_R1 2 SGDEEFKGEDELCDSGR 17 1 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 1 0 S(1)GDEEFKGEDELCDSGR;S(1)GDEEFKGEDELCDSGR ; 178.77 8.05E-18 1818730000 1017120 608920 425820 2070900 801360 679700 1158920 789180 604560 2428700 TRUE FALSE FALSE 1243374.835 680127.8971 583348.5378 2184028.023 721573.7847 715288.041 911307.2745 595632.3676 725889.6466 1823269.787 0.681947808 0.373026473 0.319946363 1.197863333 0.395758099 0.392310587 0.499820312 0.326683616 0.398125199 1 20.79809662 -10.19746838 4.454011891 1.000124308 0.507701593 0.255533853 0.251148845 347744031.8 113.4296542 467696.4431 0.0616216 6.35E-11 10.19746838 -0.492422715 S(ph)GDEEFKGEDELCDSGR ddPTM_HeLa_A486_30min_R1 2 SGDEEFKGEDELCDSGR 17 1 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 1 0 S(1)GDEEFKGEDELCDSGR;S(1)GDEEFKGEDELCDSGR ; 234.36 1.72E-42 3134400000 1246110 1418410 472170 1018500 839230 1814320 2218410 1746710 959270 3148600 TRUE FALSE FALSE 1158764.124 1306010.026 655006.8692 2371119.472 733965.9479 1590487.645 1663340.354 1349022.263 1042420.296 2360170.066 0.490966367 0.553354203 0.277525285 1.004639245 0.31098011 0.673886881 0.704754449 0.571578414 0.441671688 1 21.17045939 -11.27381365 2.15441639 2.694910821 0.564258479 0.308191216 0.198149026 15778152.57 2249468.78 130262719.8 0.047372079 5.32E-12 11.27381365 -2.130652342 S(ph)GDEGS(ph)EDEAPS(ph)GED ddPTM_HeLa_A485_30min_R1 1 SGDEGSEDEAPSGED 15 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 S(1)GDEGS(1)EDEAPS(1)GED 173.19 1.37E-11 0 120630 145110 99210 137850 101050 102280 131550 115820 79628 146100 TRUE FALSE FALSE 147463.7273 162079.3522 135911.9075 145380.3964 90989.10719 107635.2226 103443.2678 87414.9634 95608.60921 109679.9588 1.34449109 1.477748114 1.239168112 1.325496454 0.829587358 0.981357249 0.94313737 0.797000331 0.871705372 1 16.74294041 -5.754124069 24.90766617 0.89949289 1.348402099 0.880189218 0.080046473 51.62337637 175769.7519 0.024354535 0.030793176 1.76E-06 5.754124069 0.448909208 S(ph)GDEMIFDPTMSK ddPTM_HeLa_A485_30min_R1 4 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK ;;; 210.91 5.77E-22 200199000 492795 371992 275243 578037 583061 451242 693500 675240 388044 765800 TRUE FALSE FALSE 602415.5476 415493.2285 377066.8395 609613.6976 525009.3996 474868.3334 545328.0596 509636.3313 465920.8714 574900.1535 1.04786117 0.722722417 0.655882308 1.060381866 0.913218402 0.826001403 0.948561339 0.886477988 0.810437897 1 19.13295189 -5.260465885 24.99985785 0.912895655 0.800212022 0.157171505 0.117270378 165.2123065 4242685.141 0.032419915 0.052280453 5.49E-06 5.260465885 -0.112683633 S(ph)GDEMIFDPTMSK ddPTM_HeLa_A486_30min_R1 2 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK ; 237.21 7.69E-35 98409000 262960 264580 149139 159829 282890 340990 401540 392250 210820 356890 TRUE FALSE FALSE 244527.8619 243613.7172 206889.6149 372089.9893 247407.2984 298922.1207 301070.4449 302943.2378 229094.0473 267522.421 0.914046236 0.910629159 0.773354301 1.390874035 0.924809582 1.117372217 1.125402663 1.13240317 0.856354568 1 18.02930028 -5.165570682 23.74263021 1.081078365 0.870471427 0.324708944 0.140118463 38.10583943 9432.574092 0.036172561 0.062652719 6.83E-06 5.165570682 -0.210606938 S(ph)GDETPGSEVPGDK ddPTM_HeLa_A485_30min_R1 1 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(1)GDETPGSEVPGDK 275.42 6.69E-49 635730000 669650 442020 230240 849310 337150 389880 573270 436630 305810 927440 TRUE FALSE FALSE 818611.3322 493710.3939 315415.3571 895705.6547 303582.1622 410293.5139 450786.1813 329545.8079 367183.2619 696246.2763 1.175749674 0.709103102 0.453022684 1.286478198 0.436026981 0.589293656 0.647452197 0.473317875 0.527375549 1 19.40923818 -4.27006346 4.806228113 0.66193866 1.2010672 0.250307517 0.256616665 0.22775744 15.17522365 0.062741782 0.406260048 5.37E-05 4.27006346 0.53912854 S(ph)GDETPGSEVPGDK ddPTM_HeLa_A486_30min_R1 4 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.999)GDET(0.001)PGSEVPGDK;S(0.982)GDET(0.018)PGSEVPGDK;S(0.997)GDET(0.003)PGSEVPGDK;S(1)GDETPGSEVPGDK ;;; 324.7 1.33E-69 2427330000 4289690 3684210 1131530 1302000 1707150 3586510 3856720 3207440 2926500 6795710 TRUE FALSE FALSE 3989004.883 3392259.782 1569688.719 3031121.799 1493023.328 3144042.861 2891727.864 2477175.93 3180171.376 5094019.983 0.783076018 0.665929814 0.308143416 0.595035318 0.29309334 0.617202695 0.567671088 0.486290972 0.624295034 1 22.28037319 -8.14693763 4.175064216 0.999976084 0.533769354 0.482652395 0.142366184 0.871071187 23.59022696 0.137794471 0.036117376 7.13E-09 8.14693763 -0.46620673 S(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_A485_30min_R1 2 SGDETPGSEVPGDKAAEEQGDDQDSEK 27 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(1)GDETPGSEVPGDKAAEEQGDDQDSEK;S(0.603)GDET(0.397)PGSEVPGDKAAEEQGDDQDSEK ; 430.41 4.19E-224 4184900000 1450750 1069320 469190 2525860 990380 1622300 2943080 2707830 852770 3219290 TRUE FALSE FALSE 1773464.332 1194367.672 642762.9056 2663841.336 891774.2898 1707241.119 2314266.915 2043730.447 1023913.117 2416780.25 0.733812821 0.494197878 0.265958357 1.102227369 0.368992708 0.7064114 0.957582683 0.845641819 0.423668274 1 21.20465487 -5.937159751 0.837515991 0.788320276 0.548268295 0.101543035 0.260650896 1.536711083 2.377869548 0.148316042 0.200142435 1.16E-06 5.937159751 -0.240051981 S(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_A486_30min_R1 2 SGDETPGSEVPGDKAAEEQGDDQDSEK 27 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.823)GDET(0.176)PGSEVPGDKAAEEQGDDQDSEK;S(0.495)GDET(0.495)PGS(0.01)EVPGDKAAEEQGDDQDSEK ; 347.92 6.89E-146 3452740000 2793400 1959790 658550 1366350 1428620 2251400 3239500 2848100 1420760 4888000 TRUE FALSE FALSE 2597597.085 1804489.103 913558.1966 3180931.852 1249429.158 1973645.159 2428942.836 2199649.804 1543912.621 3664012.984 0.708948657 0.492489822 0.249332685 0.86815518 0.341000199 0.538656704 0.66291873 0.600338976 0.421372039 1 21.80499319 -10.89727999 2.727475274 1.240656352 0.541250919 0.389319921 0.171859044 41316298.04 25842182.62 63908991.18 0.041799523 1.27E-11 10.89727999 -0.699405433 S(ph)GDLGDMEPLKGTTPLMQK ddPTM_HeLa_A485_30min_R1 1 SGDLGDMEPLKGTTPLMQK 19 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716-21;O60716-11;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-24;O60716-27;O60716-29;O60716-31;O60716-32 O60716-5 CTNND1 Catenin delta-1 1 0 S(1)GDLGDMEPLKGTTPLMQK 122.3 4.28E-06 204460000 177380 134480 49420 187030 98707 139670 192960 163040 86750 267800 TRUE FALSE FALSE 216837.569 150206.2662 67702.51454 197246.9753 88879.3845 146982.9052 151732.5197 123054.1844 104159.9293 201042.3885 1.078566419 0.747137294 0.336757412 0.981121329 0.44209276 0.731104054 0.754728994 0.612080792 0.518099342 1 17.61714019 -8.937018914 15.4096924 0.999995392 0.68264869 0.156453616 0.216125724 0 0 0.201418689 0.048851208 1.16E-09 8.937018914 -0.317346702 S(ph)GDLGDMEPLKGTTPLMQK ddPTM_HeLa_A486_30min_R1 2 SGDLGDMEPLKGTTPLMQK 19 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716-21;O60716-11;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-24;O60716-27;O60716-29;O60716-31;O60716-32 O60716-5 CTNND1 Catenin delta-1 1 0 S(1)GDLGDMEPLKGTTPLMQK;S(1)GDLGDMEPLKGTTPLMQK ; 133.1 1.41E-06 338470000 266760 217893 82843 93414 163002 256070 272950 242225 191291 407990 TRUE FALSE FALSE 248061.5016 200626.3651 114922.0282 217472.5129 142556.7692 224478.6869 204655.023 187075.6552 207872.2579 305826.6484 0.811118007 0.656013353 0.375775063 0.711097329 0.466135865 0.734006301 0.669186364 0.611704886 0.679706163 1 18.2223546 -9.539774227 0.534468981 1.063751464 0.614578103 0.455998775 0.120382635 9.386882921 2.212071741 1.22537308 0.054912857 2.89E-10 9.539774227 -0.449173361 S(ph)GEGEVSGLMR ddPTM_HeLa_A485_30min_R1 2 SGEGEVSGLMR 11 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(1)GEGEVSGLMR;S(1)GEGEVSGLMR ; 248.5 2.76E-22 3301600000 400610 324590 293290 530110 493810 373980 550660 510270 286590 676430 TRUE FALSE FALSE 489724.3124 362547.9769 401790.1758 559068.567 444644.5425 393561.0145 433006.9925 385125.4824 344105.9842 507808.4498 0.964387876 0.713946326 0.791223888 1.100943805 0.875614698 0.775018641 0.852697494 0.758406999 0.677629497 1 18.95392488 -6.203591558 7.287886553 0.8002225 0.886165508 0.083796755 0.122915136 0.703492247 77.77257467 0.041667701 0.041564207 6.26E-07 6.203591558 0.085943008 S(ph)GEGEVSGLMR ddPTM_HeLa_A486_30min_R1 3 SGEGEVSGLMR 11 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(1)GEGEVSGLMR;S(1)GEGEVSGLMR;S(1)GEGEVSGLMR ;; 234.24 1.27E-21 4019120000 693960 651200 461261 497619 676990 818250 1010410 899940 560656 1183310 TRUE FALSE FALSE 645316.9876 599596.5404 639873.6122 1158482.18 592075.6015 717302.6344 757594.731 695043.3076 609254.1135 887001.4739 0.727526398 0.675981448 0.72138957 1.306065677 0.667502387 0.808682573 0.854107635 0.783587545 0.686869336 1 19.75857698 -5.03376502 24.99993306 0.863914623 0.700986281 0.160331934 0.171717326 1139.929895 844014.05 0.046788554 0.0811076 9.25E-06 5.03376502 -0.162928342 S(ph)GELMIK ddPTM_HeLa_A485_30min_R1 2 SGELMIK 7 0 Q9BQS8;Q9BQS8-4;C9J2W6;H7BZ74 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 0 S(1)GELMIK;S(1)GELMIK ; 104.2 0.0036 75399000 176175 169115 131644 286980 203946 176653 271430 239341 147607 339190 TRUE FALSE FALSE 215364.521 188891.5281 180344.5938 302656.9907 183640.4201 185902.2779 213436.7631 180642.2445 177230.371 254636.1753 0.845773467 0.741809477 0.708244198 1.188585991 0.721187474 0.730070178 0.838202831 0.709413123 0.69601411 1 17.95807787 S(ph)GELMIK ddPTM_HeLa_A486_30min_R1 2 SGELMIK 7 0 Q9BQS8;Q9BQS8-4;C9J2W6;H7BZ74 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 0 S(1)GELMIK;S(1)GELMIK ; 104.2 0.0036 236910000 312270 326420 169865 144677 290800 336700 429130 368300 256600 471860 TRUE FALSE FALSE 290381.4856 300553.2904 235641.2771 336815.3676 254325.1524 295161.3773 321757.1351 284446.1299 278842.2946 353703.1847 0.820975038 0.849733063 0.666211918 0.952254269 0.719035517 0.834488888 0.909681193 0.804194427 0.7883511 1 18.43217968 -14 0.365342511 3.332886236 0.811926451 0.327816561 0.078649472 596.4228594 4.690101202 1096.417373 0.054424166 1.00E-14 14 -2.520959785 S(ph)GEVTLTK ddPTM_HeLa_A486_30min_R1 1 SGEVTLTK 8 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 S(0.972)GEVT(0.028)LTK 73.499 0.014135 173360000 248810 281590 152790 123450 272840 307470 430130 366550 216870 364040 TRUE FALSE FALSE 231369.7039 259275.7829 211954.3799 287397.8388 238617.8631 269537.4775 322506.9245 283094.5667 235668.4662 272882.0145 0.847874508 0.950138775 0.776725356 1.053194507 0.874436021 0.987743652 1.181854822 1.037424791 0.863627699 1 18.05791778 -5.728062896 1.166846511 1.020751249 0.873863237 0.243217048 0.0988299 0.689854167 1.98228349 0.041793409 0.063846103 1.87E-06 5.728062896 -0.146888013 S(ph)GGGAGSNGSVLDPAER ddPTM_HeLa_A485_30min_R1 2 SGGGAGSNGSVLDPAER 17 0 Q15149-3;Q15149-2;H0YDN1;E9PMV1 Q15149-3 PLEC Plectin 1 0 S(1)GGGAGSNGSVLDPAER;S(1)GGGAGSNGSVLDPAER ; 226.98 2.05E-34 987160000 315060 376470 350510 353210 503770 392180 488980 509910 346220 492810 TRUE FALSE FALSE 385144.0101 420494.8916 480178.2349 372504.9679 453612.89 412713.9384 384505.4284 384853.773 415703.1783 369961.5365 1.041037978 1.136590835 1.297913939 1.006874854 1.226108244 1.115559045 1.039311903 1.040253472 1.123638912 1 18.49701576 -6.619877337 4.976596977 1.054850956 1.145098254 0.211723552 0.082593863 0.340216111 13.93128201 0.031561443 0.024159694 2.40E-07 6.619877337 0.090247298 S(ph)GGGAGSNGSVLDPAER ddPTM_HeLa_A486_30min_R1 1 SGGGAGSNGSVLDPAER 17 0 Q15149-3;Q15149-2;H0YDN1;E9PMV1 Q15149-3 PLEC Plectin 1 0 S(1)GGGAGSNGSVLDPAER 189.44 6.85E-18 577740000 327490 359680 280770 96718 444030 349310 404930 395440 296340 363930 TRUE FALSE FALSE 304534.6422 331177.6469 389491.6633 225164.3919 388335.617 306215.6837 303612.2311 305406.9444 322026.9898 272799.5592 1.116331137 1.213996268 1.427757671 0.825384002 1.423519958 1.122493323 1.112949859 1.119528731 1.18045275 1 18.05748179 -12.92900571 0.157209814 0.545619965 1.228211985 0.099020996 0.161328243 213.2061469 2.648846267 31.30684887 0.725690682 1.18E-13 12.92900571 0.682592021 S(ph)GGGDLTLGLEPSEEEAPR ddPTM_HeLa_A485_30min_R1 3 SGGGDLTLGLEPSEEEAPR 19 0 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 S(1)GGGDLTLGLEPSEEEAPR;S(1)GGGDLTLGLEPSEEEAPR;S(0.935)GGGDLT(0.065)LGLEPSEEEAPR ;; 408.23 2.10E-163 715957000 215228 232713 137575 251716 135891 215674 299568 283327 201511 507413 TRUE FALSE FALSE 263104.7261 259926.761 188469.7175 265466.6077 122361.2149 226966.3571 235562.8496 213840.609 241952.4093 380924.2773 0.69070086 0.682358087 0.494769508 0.696901257 0.321221886 0.595830643 0.618398101 0.561373012 0.635171932 1 18.53914471 -8.269065846 3.026871992 0.999992806 0.580004451 0.578320617 0.106201116 1.501148445 15.99537601 0.101809989 0.0271233 5.38E-09 8.269065846 -0.419988355 S(ph)GGGDLTLGLEPSEEEAPR ddPTM_HeLa_A486_30min_R1 4 SGGGDLTLGLEPSEEEAPR 19 0 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 S(0.999)GGGDLT(0.001)LGLEPSEEEAPR;S(1)GGGDLTLGLEPSEEEAPR;S(1)GGGDLTLGLEPSEEEAPR;S(1)GGGDLTLGLEPSEEEAPR ;;; 418.75 4.81E-165 787729000 314524 410306 321475 139593.5 414540 403862 337576 317234 422875 490023 TRUE FALSE FALSE 292477.4918 377791.8583 445958.7294 324980.7227 362544.5278 354037.6126 253110.9143 245006.7434 459530.1455 367318.0513 0.796251343 1.028514272 1.214094238 0.884739319 0.987004386 0.963844852 0.689078343 0.667015254 1.251041553 1 18.48667027 -6.545250683 24.99539528 0.867238834 0.990500448 0.027381921 0.183611079 620.7321725 693516.4045 0.070108344 0.054309394 2.85E-07 6.545250683 0.123261614 S(ph)GGGRCAIHPR ddPTM_HeLa_A486_30min_R1 1 SGGGRCAIHPR 11 1 Q96MC4 Q96MC4 KIAA1731NL Protein DDC8 homolog 1 0 S(1)GGGRCAIHPR 40.589 0.03651 566770000 23518 26780 13631 15815 36067 33277 34426 37255 32093 41729 TRUE FALSE FALSE 21869.50965 24657.85527 18909.28825 36818.11925 31543.14055 29171.62208 25812.25068 28772.84977 34874.84708 31279.78679 0.699157887 0.788299979 0.604521008 1.177057871 1.008419295 0.93260297 0.825205455 0.919854408 1.114932378 1 14.93294306 -5.249621349 24.99397071 0.98417914 0.706423655 0.641902771 0.102150686 533.4013514 1128089.479 0.029211412 0.05008917 5.63E-06 5.249621349 -0.277755484 S(ph)GGNEVSIEER ddPTM_HeLa_A485_30min_R1 1 SGGNEVSIEER 11 0 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 S(0.984)GGNEVS(0.016)IEER 72.321 0.0068014 0 42653 39513 39972 55884 41200 44312 53157 57978 45019 68075 TRUE FALSE FALSE 52141.0127 44133.70163 54759.30617 58936.80141 37097.98334 46632.1078 41799.5727 43758.80459 54053.90036 51105.15533 1.020269137 0.863586097 1.071502588 1.153245715 0.725914697 0.912473654 0.817913035 0.8562503 1.057699561 1 15.64118121 -5.755045192 24.99999596 0.884869537 1.018635624 0.25547592 0.109276717 221.1839475 864780.3738 0.032956943 0.041516685 1.76E-06 5.755045192 0.133766087 S(ph)GGNEVSIEER ddPTM_HeLa_A486_30min_R1 4 SGGNEVSIEER 11 0 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 S(1)GGNEVSIEER;S(1)GGNEVSIEER;S(1)GGNEVSIEER;S(1)GGNEVSIEER ;;; 186.62 1.26E-10 1221270000 194477 260698 253929 112511 337347 254357 325744 299963 224188 275553 TRUE FALSE FALSE 180845.1666 240039.341 352257.1093 261931.294 295033.7936 222977.0195 244239.4058 231667.973 243620.7963 206552.7353 0.875539926 1.162121338 1.705410044 1.268108571 1.428370306 1.079516179 1.182455442 1.121592376 1.179460519 1 17.65615064 -6.278535804 24.62476053 1.124570077 1.303016146 0.156085153 0.20133565 1393.68735 2007385.014 0.074170707 0.065577926 5.27E-07 6.278535804 0.178446069 S(ph)GGSIDNVLSQIAAQR ddPTM_HeLa_A486_30min_R1 1 SGGSIDNVLSQIAAQR 16 0 A0A0A0MRS7;Q68DC2;H7C163;Q68DC2-4 A0A0A0MRS7 ANKS6 Ankyrin repeat and SAM domain-containing protein 6 1 0 S(0.983)GGS(0.017)IDNVLSQIAAQR 59.862 0.012185 0 34894 34772 27984 16652 40143 34305 41342 39269 29712 43176 TRUE FALSE FALSE 32448.11079 32016.54008 38820.15424 38766.69755 35107.89062 30072.79789 30997.79433 30328.30594 32287.46008 32364.44857 1.002585004 0.989250288 1.199469046 1.197817335 1.084767149 0.929192346 0.957772979 0.937087059 0.997621202 1 14.9821223 -6.206508209 6.360283577 0.96008638 1.101327502 0.479541456 0.067772839 0.215565027 19.60284756 0.025046051 0.024906784 6.22E-07 6.206508209 0.141241122 S(ph)GHFDVTTVASIK ddPTM_HeLa_A485_30min_R1 2 SGHFDVTTVASIK 13 0 Q8TDM6-4;Q8TDM6;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 S(0.998)GHFDVT(0.002)TVASIK;S(0.999)GHFDVT(0.001)TVASIK ; 167.71 4.28E-12 405990000 666850 726230 606740 707300 921770 805280 954610 1005470 688570 1061400 TRUE FALSE FALSE 815188.4819 811156.2811 831198.3746 745938.008 829995.3423 847443.2156 750649.7751 758876.906 826759.6831 796812.5136 1.023061847 1.018001434 1.043154268 0.936152477 1.041644462 1.06354155 0.942065746 0.952390798 1.037583709 1 19.60388078 -6.768213498 24.9998542 0.979042642 1.018891853 0.174490727 0.039884601 288.1492613 1063402.411 0.016721124 0.011560939 1.71E-07 6.768213498 0.039849211 S(ph)GHFDVTTVASIK ddPTM_HeLa_A486_30min_R1 3 SGHFDVTTVASIK 13 0 Q8TDM6-4;Q8TDM6;Q8TDM6-2;A0A0A0MSL1;Q8TDM6-5 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 S(0.998)GHFDVT(0.001)TVASIK;S(0.999)GHFDVT(0.001)TVASIK;S(1)GHFDVTTVASIK ;; 156.14 1.75E-08 940410000 1130176 1247730 1010661 574936 1442900 1325080 1458550 1449030 1135040 1369840 TRUE FALSE FALSE 1050956.499 1148855.331 1402016.006 1338480.064 1261918.027 1161605.102 1093605.363 1119117.501 1233426.181 1026823.148 1.023502928 1.118844402 1.365391897 1.30351567 1.228953623 1.131261118 1.065037699 1.089883398 1.201206054 1 19.96975629 -6.391780266 4.01906149 1.096727726 1.216840167 0.241081703 0.099096502 0.384657502 10.63043336 0.039469402 0.034257187 4.06E-07 6.391780266 0.120112441 S(ph)GIDITDFQAK ddPTM_HeLa_A485_30min_R1 2 SGIDITDFQAK 11 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(1)GIDITDFQAK;S(1)GIDITDFQAK ; 118.76 0.00022925 110230000 611880 538140 448830 656550 600890 467650 682070 527610 417140 723110 TRUE FALSE FALSE 747990.595 601070.7918 614870.8944 692415.664 541063.2817 492135.4309 536340.1725 398212.8202 500856.1718 542851.9849 1.377890504 1.10724619 1.132667673 1.275514658 0.996704989 0.906573881 0.988004442 0.733556902 0.922638557 1 19.05019936 -5.922268087 3.888724731 0.90179366 1.207975752 0.69353305 0.098134949 0.131194895 3.893173945 0.031600703 0.035908435 1.20E-06 5.922268087 0.306182092 S(ph)GIDITDFQAK ddPTM_HeLa_A486_30min_R1 2 SGIDITDFQAK 11 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(1)GIDITDFQAK;S(1)GIDITDFQAK ; 121.66 0.00011902 303600000 822520 938470 552300 292950 689530 895570 939580 850300 658300 985790 TRUE FALSE FALSE 764865.5955 864102.2194 766165.3511 682002.4049 603042.7178 785083.6789 704487.1461 656705.2519 715361.974 738941.7676 1.035082369 1.169377964 1.036841311 0.922944723 0.816089636 1.062443231 0.953373022 0.888710424 0.968089781 1 19.49510115 -5.068730262 4.089086957 0.940587388 1.103379989 0.466356901 0.068664739 0.179564283 5.797645897 0.018826725 0.035738179 8.54E-06 5.068730262 0.162792601 S(ph)GKDSEAWVPDSEER ddPTM_HeLa_A485_30min_R1 2 SGKDSEAWVPDSEER 15 1 Q96F63;M0QXS4 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 0 S(0.999)GKDS(0.001)EAWVPDSEER;S(0.993)GKDS(0.007)EAWVPDSEER ; 154.6 1.44E-08 509340000 279380 310900 173410 304560 228780 293890 358980 364640 199398 361810 TRUE FALSE FALSE 341527.1172 347257.0505 237561.5752 321197.3416 206001.8599 309277.626 282280.9904 275211.4683 239415.3496 271617.4256 1.25738294 1.278478543 0.874618315 1.182535844 0.758426524 1.138651636 1.039259502 1.013232003 0.881443262 1 18.05121651 -4.747094752 24.99854983 0.992735959 1.267930956 0.472749547 0.118917613 193.6653163 337497.2794 0.028408851 0.074405132 1.79E-05 4.747094752 0.275194997 S(ph)GKDSEAWVPDSEER ddPTM_HeLa_A486_30min_R1 2 SGKDSEAWVPDSEER 15 1 Q96F63;M0QXS4 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 0 S(0.996)GKDS(0.004)EAWVPDSEER;S(0.999)GKDS(0.001)EAWVPDSEER ; 199.7 1.40E-25 538930000 444860 389590 163913 127602 269670 397740 421320 370710 264660 618760 TRUE FALSE FALSE 413677.6113 358717.4695 227384.5033 297063.9046 235845.474 348670.8827 315901.2797 286307.4255 287600.9419 463818.4685 0.891895514 0.773400573 0.490244608 0.640474506 0.508486596 0.751739972 0.681088187 0.617283366 0.620072208 1 18.82320074 -10.52656716 6.006727465 1.000489431 0.658434541 0.436014927 0.114542654 0.000776705 6.12E-05 0.114738821 0.027789713 2.97E-11 10.52656716 -0.34205489 S(ph)GKYDLDFK ddPTM_HeLa_A485_30min_R1 2 SGKYDLDFK 9 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 S(1)GKYDLDFK;S(1)GKYDLDFK ; 132.59 0.00010589 546470000 1354300 808150 550260 2608600 1186460 1228950 1906780 1432730 954820 3331400 TRUE FALSE FALSE 1655559.363 902656.1125 753824.0722 2751101.213 1068331.876 1293295.922 1499380.876 1081350.721 1146443.616 2500943.29 0.661973972 0.360926262 0.3014159 1.100025428 0.427171572 0.51712325 0.59952614 0.432377146 0.458404483 1 21.25404091 -10.02818548 4.149481331 1.000037013 0.538688185 0.296272863 0.212731308 179266009.9 338803664 105707.6247 0.052880137 9.37E-11 10.02818548 -0.461348828 S(ph)GKYDLDFK ddPTM_HeLa_A486_30min_R1 2 SGKYDLDFK 9 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 S(1)GKYDLDFK;S(1)GKYDLDFK ; 135.81 8.90E-05 889150000 2135660 1898600 658920 1112080 1424600 2538450 2716410 2562130 1558360 3276100 TRUE FALSE FALSE 1985961.263 1748148.021 914071.4705 2588978.441 1245913.384 2225281.848 2036735.487 1978788.93 1693439.9 2455743.236 0.808700695 0.711861076 0.372217851 1.054254534 0.507346764 0.906154119 0.829376401 0.805780059 0.689583453 1 21.22772829 -6.12649508 1.152401004 0.829411334 0.683386149 0.100892468 0.188593004 1.228165474 3.405869119 0.089588343 0.091543506 7.47E-07 6.12649508 -0.146025185 S(ph)GLPAPWISLR ddPTM_HeLa_A486_30min_R1 1 SGLPAPWISLR 11 0 M0R0K7;M0R0A9;P55899 M0R0K7 FCGRT IgG receptor FcRn large subunit p51 1 0 S(0.997)GLPAPWIS(0.003)LR 49.081 0.034907 556680000 87319 263750 1010600 13503 542760 59125 78321 135940 283120 17264 TRUE FALSE FALSE 81198.38902 242849.4894 1401931.385 31435.6664 474681.9798 51830.75864 58724.2574 104989.4295 307661.0696 12940.98203 6.274515244 18.76592432 108.3326892 2.429156175 36.68052229 4.005164254 4.537851708 8.112941453 23.77416713 1 13.65965948 -5.881428608 1.807532798 9.208982543 39.99041847 0.165983894 28.25404822 0.624145739 4.187802687 10.45402928 12.58348073 1.31E-06 5.881428608 30.78143593 S(ph)GLQLSLEQGTGENSFR ddPTM_HeLa_A486_30min_R1 1 SGLQLSLEQGTGENSFR 17 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 S(0.999)GLQLS(0.001)LEQGT(0.001)GENSFR 66.327 0.011415 44346000 129550 118880 72828 58183 109080 133630 146450 153110 102370 172330 TRUE FALSE FALSE 120469.214 109459.5158 101028.952 135452.9644 95398.16927 117144.0893 109806.661 118250.1954 111243.514 129177.4463 0.932587053 0.847357793 0.782094358 1.048580602 0.73850484 0.9068463 0.850045144 0.915408988 0.861168239 1 16.97899468 -10.28054655 0.562084084 1.050144348 0.872677023 0.174838675 0.080637178 64.48121821 9.846025387 5.010692691 0.032686239 5.24E-11 10.28054655 -0.177467325 S(ph)GNGNKPPSTDLK ddPTM_HeLa_A485_30min_R1 1 SGNGNKPPSTDLK 13 1 A0A087WWB9;P51153 A0A087WWB9 RAB13 Ras-related protein Rab-13 1 0 S(0.999)GNGNKPPS(0.001)T(0.001)DLK 53.828 0.021923 100060000 121590 90601 45865 180780 90389 122220 186860 192900 86412 336350 TRUE FALSE FALSE 148637.276 101195.9988 62832.3721 190655.5536 81389.55378 128619.2502 146935.8345 145590.9725 103754.0958 252504.1351 0.588652839 0.40076967 0.248837003 0.755059134 0.322329588 0.509374827 0.581914567 0.576588469 0.410900581 1 17.94594749 -14 0.303762886 5.35925074 0.462157725 0.540196062 0.141012387 210.2188233 1.934931661 584.4432869 0.135391605 1.00E-14 14 -4.897093016 S(ph)GNGNKPPSTDLK ddPTM_HeLa_A486_30min_R1 1 SGNGNKPPSTDLK 13 1 A0A087WWB9;P51153 A0A087WWB9 RAB13 Ras-related protein Rab-13 1 0 S(0.999)GNGNKPPS(0.001)T(0.001)DLK 65.943 0.0077712 92151000 301860 247420 131320 154830 254160 395130 433370 398430 256000 634110 TRUE FALSE FALSE 280701.1728 227813.5381 182170.6209 360452.0647 222280.8829 346382.878 324936.2423 307716.1867 278190.2861 475324.7286 0.590546117 0.479279794 0.383255088 0.758328029 0.467640056 0.728728924 0.683608958 0.647380976 0.585263651 1 18.85855393 -14 0.134902794 2.382114914 0.433869109 0.587196565 0.10746284 98.40689198 0.824666374 36.64719775 0.729214535 1.00E-14 14 -1.948245805 S(ph)GNLPSKR ddPTM_HeLa_A486_30min_R1 1 SGNLPSKR 8 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(1)GNLPSKR 57.96 0.022585 66404000 110260 93157 70557 43440 98493 96141 112600 90941 88009 133100 TRUE FALSE FALSE 102531.3434 85774.90005 97878.55998 101130.5153 86139.08953 84280.10091 84426.28904 70235.71953 95637.69098 99770.89366 1.027667886 0.85971867 0.981033209 1.013627438 0.863368928 0.844736354 0.846201592 0.703970035 0.958573061 1 16.60633138 -5.849198813 7.11339838 0.851326542 0.963068512 0.234199273 0.085549697 0.291620773 19.95321857 0.025725704 0.029292829 1.42E-06 5.849198813 0.11174197 S(ph)GNS(ph)DSIER ddPTM_HeLa_A485_30min_R1 1 SGNSDSIER 9 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 2 0 S(1)GNS(0.959)DS(0.041)IER 66.795 0.037329 366690000 350310 362870 319090 444750 437390 369690 472490 426150 303370 517480 TRUE FALSE FALSE 428235.2509 405304.49 437134.6694 469045.5663 393841.9158 389046.3968 371538.6516 321636.0443 364253.5763 388481.7595 1.102330394 1.043303785 1.125238595 1.207381183 1.013797704 1.001453446 0.956386349 0.827930878 0.937633666 1 18.56748734 -6.350958543 1.644839435 0.915677986 1.11137614 0.650557226 0.059698454 0.228925727 1.230806057 0.027464403 0.023362337 4.46E-07 6.350958543 0.195698154 S(ph)GNS(ph)DSIER ddPTM_HeLa_A486_30min_R1 2 SGNSDSIER 9 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 2 0 S(1)GNS(0.968)DS(0.032)IER;S(1)GNS(0.994)DS(0.006)IER ; 86.262 0.0087001 582800000 718930 798330 587560 353020 838730 848330 960190 930810 701040 980060 TRUE FALSE FALSE 668536.7196 735067.4233 815078.9674 821848.4006 733528.6626 743671.6698 719940.3061 718884.8824 761806.7117 734646.5969 0.91001132 1.000572828 1.109484439 1.118698983 0.998478269 1.012284918 0.979981816 0.978545175 1.036970313 1 19.48669088 S(ph)GNSDS(ph)IER ddPTM_HeLa_A485_30min_R1 1 SGNSDSIER 9 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 2 0 S(0.89)GNS(0.138)DS(0.973)IER 67.095 0.036055 117290000 120500 142260 131070 141320 130650 130700 143610 155940 122000 166060 TRUE FALSE FALSE 147304.8093 158896.0695 179558.2473 149039.9538 117642.0273 137543.2499 112926.5503 117695.4705 146484.2809 124664.2981 1.181611829 1.274591619 1.440334161 1.195530365 0.943670554 1.103309063 0.905845154 0.944099251 1.175029926 1 16.92768883 -5.590878252 4.838900183 1.009823587 1.300145035 0.653313223 0.095212308 0.121378302 5.480198272 0.028489381 0.037474544 2.57E-06 5.590878252 0.290321448 S(ph)GNSDSIER ddPTM_HeLa_A485_30min_R1 4 SGNSDSIER 9 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 1 0 S(1)GNSDSIER;S(0.982)GNS(0.017)DS(0.001)IER;S(0.999)GNS(0.001)DSIER;S(0.993)GNS(0.007)DSIER ;;; 241.18 6.14E-16 10184900000 2553360 2746860 2568100 3018860 3461450 2629430 3588070 3448840 2576000 3839250 TRUE FALSE FALSE 3121346.123 3068081.382 3518147.058 3183772.678 3116815.884 2767102.889 2821449.533 2603006.582 3092979.572 2882195.631 1.082975107 1.064494495 1.220648251 1.104634482 1.081403306 0.960067686 0.978923673 0.903133207 1.073133114 1 21.45873683 -6.115362573 3.172871733 0.976526626 1.120252688 0.574975192 0.055334428 0.183529931 3.497467776 0.019288894 0.01956807 7.67E-07 6.115362573 0.143726062 S(ph)GNSDSIER ddPTM_HeLa_A486_30min_R1 5 SGNSDSIER 9 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;A0A5F9ZGW5;Q7Z2E3-13;A0A5F9ZI51 Q7Z2E3 APTX Aprataxin 1 0 S(0.999)GNS(0.001)DSIER;S(0.88)GNS(0.12)DSIER;S(0.994)GNS(0.005)DSIER;S(0.996)GNS(0.004)DSIER;S(0.959)GNS(0.041)DS(0.001)IER ;;;; 228.74 1.87E-12 12529439500 3903950 4497507 3285549 1562035.1 4683640 4521631 4870885 4735373 3915383 4922427 TRUE FALSE FALSE 3630303.265 4141108.166 4557801.563 3636496.654 4096174.198 3963798.14 3652138.054 3657231.94 4254771.551 3689819.24 0.983870219 1.122306513 1.235237085 0.985548727 1.11012869 1.074252662 0.989787796 0.991168321 1.153111108 1 21.81511871 -6.540631334 20.91236753 1.032671979 1.091937382 0.091738677 0.079949809 87.29386888 102825.0316 0.030578058 0.0236995 2.88E-07 6.540631334 0.059265403 S(ph)GPFGK ddPTM_HeLa_A485_30min_R1 2 SGPFGK 6 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 S(1)GPFGK;S(1)GPFGK ; 86.794 0.017013 524200000 2190100 1828320 1395260 2768700 2833000 2290700 2992700 2938000 1709410 3754500 TRUE FALSE FALSE 2677280.189 2042126.12 1911424.736 2919947.07 2550936.573 2410637.51 2353285.197 2217450.893 2052472.907 2818572.246 0.949871054 0.724525022 0.678153536 1.035966729 0.905045658 0.855269015 0.834921014 0.786728421 0.728195955 1 21.42653312 -6.266649289 0.009899653 1.683851599 1.46E-06 0.038644227 0.11369324 13382.00409 52.58247124 4351.724212 4588.219423 5.41E-07 6.266649289 -1.683850141 S(ph)GPFGK ddPTM_HeLa_A486_30min_R1 2 SGPFGK 6 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 S(1)GPFGK;S(1)GPFGK ; 85.064 0.017938 605590000 3651200 3641600 1941300 1604590 3554400 4140900 4772800 4525400 2753300 5018100 TRUE FALSE FALSE 3395269.735 3353026.354 2693023.35 3735566.611 3108574.009 3630037.86 3578594.958 3495065.209 2991958.261 3761535.098 0.902628753 0.891398396 0.715937318 0.993096306 0.826411007 0.965041603 0.951365564 0.929159271 0.795408838 1 21.84289012 -5.290067386 24.99994195 0.918892706 0.842129072 0.201348029 0.078222351 1221.343924 1066558.95 0.021546984 0.031966247 5.13E-06 5.290067386 -0.076763634 S(ph)GPIFR ddPTM_HeLa_A486_30min_R1 2 SGPIFR 6 0 A0A087WYN8 A0A087WYN8 1 0 S(1)GPIFR;S(1)GPIFR ; 79.597 0.021811 146459000 65168 57751 53744 20545.8 73844 42284 43940 47746 41988 54001 TRUE FALSE FALSE 60600.05973 53174.60043 74555.11611 47831.66073 64581.79695 37067.42999 32945.74725 36875.27809 45627.55365 40478.79811 1.497081498 1.313640793 1.841831269 1.181647256 1.595447493 0.91572457 0.813901321 0.910977593 1.127196354 1 15.30487883 -6.267474669 24.9492279 0.939267374 1.479225796 0.690278752 0.178145287 267.5722036 1106111.116 0.05979784 0.054101798 5.40E-07 6.267474669 0.539958422 S(ph)GPIKPEK ddPTM_HeLa_A485_30min_R1 1 SGPIKPEK 8 1 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 0 S(1)GPIKPEK 70.977 0.0077917 264000000 193490 161470 103100 316030 279090 221760 317540 348840 185070 426160 TRUE FALSE FALSE 236531.183 180352.5119 141240.9803 333293.9187 251302.8197 233371.0107 249694.9849 263286.443 222211.8514 319926.1549 0.739330559 0.56373169 0.441479942 1.041783904 0.785502579 0.729452741 0.780476935 0.822960046 0.694572319 1 18.28737942 -7.269766322 0.050981839 1.589123438 1.54E-11 0.263014277 0.145600925 55.16129717 2.73634594 41.00382942 42.56521631 5.37E-08 7.269766322 -1.589123438 S(ph)GPIKPEK ddPTM_HeLa_A486_30min_R1 3 SGPIKPEK 8 1 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 0 S(1)GPIKPEK;S(1)GPIKPEK;S(1)GPIKPEK ;; 81.865 0.0037598 512820000 533003 597140 300022 296055 573290 745770 870450 821880 462369 865600 TRUE FALSE FALSE 495642.2421 549820.4517 416198.5533 689231.0018 501382.6225 653764.4798 652654.2033 634755.8655 502447.5172 648848.1259 0.763880209 0.847379271 0.641442175 1.062237794 0.772727242 1.007577049 1.005865899 0.978281111 0.774368449 1 19.3075213 -5.260895499 24.99999946 0.940317662 0.760548427 0.421189856 0.102980984 49.2564173 2264065.705 0.02762166 0.044364345 5.48E-06 5.260895499 -0.179769235 S(ph)GS(ph)GKVY(ph)QGPAK ddPTM_HeLa_A486_30min_R1 1 SGSGKVYQGPAK 12 1 A0A2R8YD50;P51659-3;P51659;E7EPL9;A0A2R8Y7L2;E7ET17;P51659-2 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 3 0 S(1)GS(1)GKVY(1)QGPAK 82.362 0.0047116 246970000 221600 284950 187490 78151 285660 281120 282530 271740 233140 236600 TRUE FALSE FALSE 206066.9843 262369.5242 260091.1492 181939.4775 249829.8591 246438.2726 211838.0057 209870.734 253348.7629 177353.82 1.161897637 1.479356488 1.466509992 1.025855984 1.408652259 1.38952898 1.194437231 1.183344876 1.428493409 1 17.43627088 -12.60425161 0.31266727 8.52E-11 1.320644476 0.268084449 0.14777107 157.5680127 3.230062423 102.4220766 0.139800104 2.49E-13 12.60425161 1.320644476 S(ph)GS(ph)IKGSR ddPTM_HeLa_A485_30min_R1 2 SGSIKGSR 8 1 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 S(1)GS(1)IKGSR;S(1)GS(1)IKGSR ; 99.539 0.0025521 814870000 1043410 689650 420370 1917880 692900 949850 959200 858340 473860 1545680 TRUE FALSE FALSE 1275512.955 770298.5683 575882.3561 2022648.928 623912.4431 999582.6773 754259.0841 647830.7692 568959.3555 1160370.422 1.099229117 0.663838507 0.496291826 1.743106244 0.537683856 0.861434123 0.650015779 0.558296521 0.490325628 1 20.146154 S(ph)GS(ph)QGRTDSVEK ddPTM_HeLa_A486_30min_R1 1 SGSQGRTDSVEK 12 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 S(0.951)GS(0.556)QGRT(0.123)DS(0.37)VEK 82.578 0.0041699 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)GS(ph)RGRDS(ph)PYQSR ddPTM_HeLa_A486_30min_R1 3 SGSRGRDSPYQSR 13 2 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 3 0 S(1)GS(1)RGRDS(0.964)PY(0.009)QS(0.028)R;S(1)GS(0.999)RGRDS(0.915)PY(0.031)QS(0.055)R;S(0.988)GS(0.964)RGRDS(0.892)PY(0.128)QS(0.028)R ;; 63.062 0.010747 1087730000 752160 880490 931760 1037170 1894110 1242940 1993720 2048000 838160 1520300 TRUE FALSE FALSE 699437.4682 810716.7657 1292562.425 2414584.176 1656533.062 1089598.7 1494870.169 1581715.108 910812.3837 1139606.985 0.61375323 0.711400313 1.134217711 2.118786747 1.453600306 0.956117955 1.311741845 1.387947888 0.799233767 1 20.12010494 -4.812607797 4.124761959 1.319963959 0.648733335 0.337292034 0.34314613 0.222796569 7.7537517 0.094970137 0.228042233 1.54E-05 4.812607797 -0.671230624 S(ph)GS(ph)S(ph)PEVK ddPTM_HeLa_A485_30min_R1 1 SGSSPEVK 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)GS(1)S(1)PEVK 40.154 0.013098 0 414920 380500 261220 1081100 449950 350920 651110 537190 297730 1354700 TRUE FALSE FALSE 507217.5225 424996.1651 357856.1483 1140157.756 405151.3981 369293.6286 511995.0294 405443.3102 357481.6801 1016998.221 0.498739832 0.417892732 0.351874901 1.121101032 0.398379653 0.363121214 0.503437488 0.398666686 0.351506691 1 19.95588573 -10.60323538 3.696829247 1.017297798 0.493195129 0.330531449 0.217936635 433702843.4 342596561.5 68698296.47 0.055639503 2.49E-11 10.60323538 -0.524102669 S(ph)GSASPAPGDTLPWNLPK ddPTM_HeLa_A486_30min_R1 1 SGSASPAPGDTLPWNLPK 18 0 Q5T0V7;Q03001-11;F6QMI7;E7ETB9 Q5T0V7;F6QMI7 DST Dystonin 1 0 S(0.331)GS(0.331)AS(0.331)PAPGDT(0.006)LPWNLPK 53.169 0.037611 118300000 41546 44444 24987 26690 34533 38243 55730 48395 31313 51885 TRUE FALSE FALSE 38633.83994 40922.09558 34662.63558 62135.66884 30201.54913 33524.96749 41785.76455 37376.51496 34027.23605 38892.65829 0.993345316 1.052180473 0.891238529 1.597619489 0.776535996 0.861987042 1.074386951 0.961017236 0.874901268 1 15.24721022 S(ph)GSELPSILPEIWPK ddPTM_HeLa_A485_30min_R1 2 SGSELPSILPEIWPK 15 0 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 S(0.84)GS(0.16)ELPSILPEIWPK;S(0.5)GS(0.5)ELPSILPEIWPK ; 232.53 1.54E-34 174226000 169783 164719 122230 198239 210121 165911 203159 216882 137065 250473 TRUE FALSE FALSE 207550.6426 183981.4542 167447.9634 209068.2946 189200.6155 174597.8434 159752.42 163691.3494 164572.6883 188034.6907 1.103789103 0.978444209 0.890516334 1.111860231 1.006200583 0.928540594 0.849590144 0.870538031 0.875225139 1 17.52063933 -6.368645792 3.46490858 0.888326037 1.014368223 0.397155206 0.069873651 0.254226403 5.682001157 0.02617439 0.022813164 4.28E-07 6.368645792 0.126042187 S(ph)GSELPSILPEIWPK ddPTM_HeLa_A486_30min_R1 2 SGSELPSILPEIWPK 15 0 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 S(0.5)GS(0.5)ELPSILPEIWPK;S(0.965)GS(0.035)ELPSILPEIWPK ; 205.3 1.86E-25 178779000 316970 327850 182177 149951 299750 366840 383290 354930 268470 408790 TRUE FALSE FALSE 294752.0398 301869.972 252720.8133 349093.5061 262152.5599 321583.0106 287386.788 274120.1871 291741.1958 306426.3232 0.961901826 0.985130679 0.824735978 1.139241245 0.855515796 1.049462746 0.937865863 0.894571276 0.952076156 1 18.22518071 -9.805191756 12.87013447 1.000000447 0.955530244 0.023206277 0.086394338 0 0 0.07746926 0.018789055 1.57E-10 9.805191756 -0.044470203 S(ph)GSFDSR ddPTM_HeLa_A485_30min_R1 1 SGSFDSR 7 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.656)GS(0.344)FDSR 119.17 0.0021506 1519600000 2059300 2439900 1747700 2835600 2633500 2384400 3207500 3373600 2275600 4114600 TRUE FALSE FALSE 2517384.18 2725225.081 2394246.958 2990501.648 2371299.493 2509243.497 2522191.422 2546219.31 2732292.047 3088905.944 0.81497599 0.882262241 0.775111642 0.96814267 0.767682648 0.812340532 0.816532283 0.824311053 0.884550095 1 21.55866451 -8.112015889 3.023878962 0.999904652 0.833727531 0.466873493 0.05429273 0.388557207 7.447680367 0.049897 0.013315241 7.73E-09 8.112015889 -0.166177122 S(ph)GSGCQVSGSPLAK ddPTM_HeLa_A485_30min_R1 2 SGSGCQVSGSPLAK 14 0 Q3C1V9 Q3C1V9 Putative uncharacterized protein ENSP00000334305 1 0 S(0.25)GS(0.25)GCQVS(0.25)GS(0.25)PLAK;S(0.25)GS(0.25)GCQVS(0.25)GS(0.25)PLAK ; 61.375 0.019311 645103000 77444 298370 456220 19047.1 234290 222470 88424 158417 298850 28958 TRUE FALSE FALSE 94671.15062 333261.776 624994.7629 20087.59484 210963.265 234118.1852 69531.49004 119564.9824 358826.4538 21739.30353 4.354838253 15.32991963 28.74953018 0.924022005 9.704232918 10.76935077 3.198423075 5.499945395 16.50588545 1 14.4080181 -5.293379377 24.99989186 7.124064454 16.06329178 0.267319951 7.074769524 894.1834034 699888.2136 1.991281815 2.953837702 5.09E-06 5.293379377 8.939227324 S(ph)GSGCQVSGSPLAK ddPTM_HeLa_A486_30min_R1 2 SGSGCQVSGSPLAK 14 0 Q3C1V9 Q3C1V9 Putative uncharacterized protein ENSP00000334305 1 0 S(0.482)GS(0.482)GCQVS(0.018)GS(0.018)PLAK;S(0.25)GS(0.25)GCQVS(0.25)GS(0.25)PLAK ; 61.375 0.019311 610259000 226923 536930 1230420 18350.5 1012460 144423 107729 220929 494823 30168 TRUE FALSE FALSE 211016.8695 494381.7113 1706871.576 42720.89138 885467.826 126605.5586 80774.06476 170628.2895 537714.6561 22613.73644 9.33135796 21.86200908 75.47941404 1.889156686 39.15619289 5.598612993 3.571902634 7.545338206 23.77823132 1 14.46491177 -6.27211263 23.93269954 8.412466607 30.13249849 0.230556233 19.38993807 630.5069017 1413784.316 6.78024758 6.045939671 5.34E-07 6.27211263 21.72003188 S(ph)GSGGGSAKEPQEER ddPTM_HeLa_A485_30min_R1 2 SGSGGGSAKEPQEER 15 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 S(0.56)GS(0.439)GGGS(0.001)AKEPQEER;S(0.523)GS(0.463)GGGS(0.013)AKEPQEER ; 134.29 5.86E-06 4025860000 692530 666230 461610 967910 1165560 929380 1455130 1654660 686250 1268430 TRUE FALSE FALSE 846580.9093 744139.8031 632378.7482 1020784.472 1049512.754 978040.8997 1144229.588 1248852.041 823974.0803 952233.7447 0.889047373 0.781467583 0.664100334 1.071989391 1.10215875 1.027101702 1.201626801 1.311497358 0.865306533 1 19.86095623 -5.328362648 6.913034144 1.100553234 0.779146569 0.560042998 0.123083338 0.172162818 15.14743965 0.034694642 0.051811849 4.70E-06 5.328362648 -0.321406665 S(ph)GSGS(ph)ESEPSSR ddPTM_HeLa_A485_30min_R1 2 SGSGSESEPSSR 12 0 I3L2N2;O14641;I3L0Z8 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 2 0 S(1)GSGS(1)ESEPSSR;S(0.987)GS(0.015)GS(0.998)ESEPSSR ; 259.61 4.60E-33 314020000 479060 504850 312800 802680 482750 503760 682960 705300 440750 1087930 TRUE FALSE FALSE 585625.2443 563887.8159 428517.7367 846528.3759 434685.715 530136.0946 537040.0167 532324.0691 529204.4822 816729.0729 0.717037343 0.690422117 0.524675502 1.036486154 0.532227552 0.649096637 0.657549773 0.651775585 0.647955974 1 19.63949806 -10.91388363 2.578722986 1.192818044 0.678350388 0.343388253 0.133337909 81123859.36 43252463.82 94554417.05 0.033358139 1.22E-11 10.91388363 -0.514467656 S(ph)GSGS(ph)ESEPSSR ddPTM_HeLa_A486_30min_R1 2 SGSGSESEPSSR 12 0 I3L2N2;O14641;I3L0Z8 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 2 0 S(0.999)GS(0.001)GS(1)ESEPSSR;S(0.997)GS(0.02)GS(0.983)ESEPSSR ; 241.15 1.74E-27 271560000 600860 444340 323730 314590 425190 733010 700270 582330 568860 1067190 TRUE FALSE FALSE 558742.8168 409128.8801 449086.9258 732381.4185 371858.7055 642578.6789 525055.0393 449746.1712 618169.2428 799958.6778 0.698464599 0.511437517 0.561387654 0.915524063 0.464847392 0.80326484 0.656352702 0.562211754 0.772751468 1 19.60956595 -14 0.253952673 3.148563925 0.626755201 0.382752536 0.132184935 193.9063826 1.918650308 216.4241351 0.179596311 1.00E-14 14 -2.521808724 S(ph)GSGSESEPSSR ddPTM_HeLa_A486_30min_R1 1 SGSGSESEPSSR 12 0 I3L2N2;O14641;I3L0Z8 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 0 S(0.46)GS(0.46)GS(0.08)ESEPSSR 195.09 9.20E-14 164440000 222230 149530 159670 94878 190660 267380 240910 197750 236860 308010 TRUE FALSE FALSE 206652.8246 137680.6982 221498.5001 220880.7789 166745.645 234393.3741 180631.7699 152726.6419 257391.2155 230882.2912 0.895057059 0.596324203 0.959356818 0.956681336 0.72221063 1.015207242 0.782354372 0.661491365 1.114815754 1 17.816798 -13.99999714 0.11437259 1.53541621 0.759691946 0.108930533 0.152777298 391.1498452 2.93769266 47.88341122 1.68459785 1.00E-14 13.99999714 -0.775724264 S(ph)GSLKGPDDPR ddPTM_HeLa_A486_30min_R1 2 SGSLKGPDDPR 11 1 A8MVZ6;Q96G01-4;Q96G01-3;Q96G01 A8MVZ6 BICD1 Protein bicaudal D homolog 1 1 0 S(0.5)GS(0.5)LKGPDDPR;S(0.5)GS(0.5)LKGPDDPR ; 113.24 0.00078314 788530000 2298810 2002540 834235 1711422 1824820 2910700 3928430 3658120 1828770 5514290 TRUE FALSE FALSE 2137675.29 1843851.437 1157273.134 3984276.906 1595934.06 2551607.428 2945495.263 2825245.932 1987289.256 4133475.892 0.517161669 0.446077704 0.279975779 0.963904716 0.386099762 0.617303087 0.712595244 0.683503668 0.480779206 1 21.97892404 -14 0.123394304 2.368262657 0.375963059 0.356602773 0.180173713 168.5610145 1.334293819 57.77336921 1.58072142 1.00E-14 14 -1.992299598 S(ph)GSMDPSGAHPSVR ddPTM_HeLa_A485_30min_R1 2 SGSMDPSGAHPSVR 14 0 Q07666;Q07666-3;Q07666-2 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.868)GS(0.132)MDPSGAHPSVR;S(0.631)GS(0.369)MDPSGAHPSVR ; 201.4 5.82E-22 7749700000 1247030 2096310 2256970 676360 3235100 1506150 2248890 2320750 1962090 1624970 TRUE FALSE FALSE 1524427.521 2341455.219 3091917.123 713307.8342 2913002.085 1585009.685 1768396.28 1751582.424 2355863.466 1219894.884 1.249638424 1.919390965 2.534576678 0.584728933 2.38791237 1.299300215 1.449630048 1.435847011 1.931202021 1 20.21832541 -11.68644389 0.247922756 8.07E-13 1.724813582 0.102842696 0.548642241 113.0559743 3.121076106 62.59825513 0.824238547 2.06E-12 11.68644389 1.724813582 S(ph)GSMDPSGAHPSVR ddPTM_HeLa_A486_30min_R1 4 SGSMDPSGAHPSVR 14 0 Q07666;Q07666-3;Q07666-2 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.823)GS(0.176)MDPS(0.001)GAHPSVR;S(0.899)GS(0.101)MDPSGAHPSVR;S(0.5)GS(0.5)MDPSGAHPSVR;S(0.615)GS(0.385)MDPSGAHPSVR ;;; 171.44 2.41E-12 3173080000 2483690 2499990 2207910 165890 3029740 1924900 2351840 2213470 2365950 991700 TRUE FALSE FALSE 2309596.157 2301881.688 3062871.882 386200.3036 2649721.758 1687425.409 1763384.757 1709511.201 2571032.451 743371.8651 3.10691898 3.096541308 4.120241868 0.519525048 3.564463336 2.269961359 2.372143525 2.299671646 3.458608769 1 19.50372456 -10.90561279 2.508603185 2.33E-34 2.725493402 0.238254257 0.940733775 9172672.241 4384743.651 53925714.3 0.226842586 1.24E-11 10.90561279 2.725493402 S(ph)GSPISSEER ddPTM_HeLa_A485_30min_R1 1 SGSPISSEER 10 0 H8Y6P7;P0CAP2-3;P0CAP2;P0CAP1-11;P0CAP2-2 H8Y6P7 GCOM1;POLR2M DNA-directed RNA polymerase II subunit GRINL1A 1 0 S(0.672)GS(0.327)PISSEER 80.763 0.004134 0 117130 133010 141600 122930 173710 151400 159160 193280 125800 151980 TRUE FALSE FALSE 143185.1644 148564.3625 193983.7325 129645.3546 156414.8225 159327.0699 125154.1658 145877.7769 151046.9061 114094.183 1.254973397 1.302120394 1.700207034 1.136301179 1.370927232 1.396452174 1.096937307 1.278573308 1.323879116 1 16.79986571 -11.00185914 0.187190681 0.595261045 1.412803661 0.299237502 0.152906605 44.61239707 1.221570071 8.383052285 0.506565196 9.96E-12 11.00185914 0.817542616 S(ph)GSPRPTEPTDFLMLFEGSPSGK ddPTM_HeLa_A485_30min_R1 2 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.538)GS(0.461)PRPT(0.001)EPTDFLMLFEGSPSGK;S(0.5)GS(0.5)PRPTEPTDFLMLFEGSPSGK ; 139.81 5.03E-07 171647000 89333 92136 61410 133960 108533 110744 157179 168929 78516 180855 TRUE FALSE FALSE 109204.8177 102910.5037 84128.11448 141277.8956 97727.07344 116542.3846 123596.4226 127498.8979 94273.44101 135771.1769 0.804329904 0.757970182 0.619631621 1.04055882 0.71979249 0.858373532 0.910328874 0.939071906 0.694355335 1 17.05081771 -10.29110371 0.027950399 1.903172604 5.06E-06 0.181669941 0.118928451 1202.694967 5.80479164 235.9883904 163.4379961 5.12E-11 10.29110371 -1.903167546 S(ph)GSPRPTEPTDFLMLFEGSPSGK ddPTM_HeLa_A486_30min_R1 3 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.495)GS(0.495)PRPT(0.005)EPT(0.005)DFLMLFEGSPSGK;S(0.499)GS(0.499)PRPT(0.001)EPT(0.001)DFLMLFEGSPSGK;S(0.5)GS(0.5)PRPTEPTDFLMLFEGSPSGK ;; 134.2 8.10E-07 173488000 146198 144531 82383 75187 144120 161361 203313 190619 123726 226073 TRUE FALSE FALSE 135950.2752 133077.8372 114283.9039 175039.1357 126043.1257 141453.9204 152441.937 147219.2149 134450.6693 169462.8493 0.802242354 0.785292102 0.674389132 1.032905657 0.743780281 0.834719356 0.899559624 0.868740349 0.793393182 1 17.37060951 -14 0.107874642 1.527153707 0.729208212 0.26467408 0.090086534 238.2604176 1.71461919 28.13487475 1.187500693 1.00E-14 14 -0.797945495 S(ph)GSPSDNSGAEEMEVSLAKPK ddPTM_HeLa_A486_30min_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.527)GS(0.462)PS(0.011)DNSGAEEMEVSLAKPK 98.565 0.00071488 341920000 290760 270390 99895 142810 235450 312820 422030 356740 218790 447760 TRUE FALSE FALSE 270379.2255 248963.3117 138577.0193 332468.8972 205917.6655 274227.4489 316433.6302 275518.0896 237754.8934 335637.9816 0.805568024 0.741761437 0.412876453 0.990558028 0.613511214 0.817033423 0.942782544 0.820878758 0.708367069 1 18.35654646 -6.50436201 22.39169125 0.85691285 0.713428246 0.185497129 0.154149298 359.0903737 434238.8412 0.05389117 0.046557949 3.13E-07 6.50436201 -0.143484604 S(ph)GSS(ph)PEVK ddPTM_HeLa_A485_30min_R1 1 SGSSPEVK 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.5)GS(0.5)S(1)PEVK 132.57 0.0010858 737920000 1442600 972200 323050 4338300 594580 1170500 1657500 1465900 964450 4754700 TRUE FALSE FALSE 1763501.393 1085890.333 442559.6382 4575290.344 535381.5275 1231785.57 1303361.584 1106385.727 1158006.269 3569440.794 0.49405537 0.304218615 0.123985706 1.281794715 0.149990309 0.34509203 0.365144475 0.309960521 0.324422321 1 21.76726664 -10.61731814 3.555053554 1.025679979 0.411064075 0.247144188 0.308421546 866199383.9 1308362768 211157417.9 0.07598075 2.41E-11 10.61731814 -0.614615904 S(ph)GSSPKWTHDK ddPTM_HeLa_A485_30min_R1 2 SGSSPKWTHDK 11 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;H0YF14;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.333)GS(0.333)S(0.333)PKWTHDK;S(0.333)GS(0.333)S(0.333)PKWTHDK ; 117.92 0.00015554 378070000 97817 154965 100474 118985 359140 331070 546870 969120 146220 219210 TRUE FALSE FALSE 119576.0542 173086.8087 137643.5137 125484.8493 323382.7606 348404.3133 430026.757 731441.8005 175565.0128 164564.9813 0.726619073 1.051783966 0.836408285 0.762524617 1.965076398 2.117123039 2.61311218 4.444698956 1.066843088 1 17.32829784 -5.962533238 2.058386796 2.507734732 0.838961183 0.32910514 0.914929545 0.327448145 2.809228587 0.32262211 0.362842058 1.09E-06 5.962533238 -1.668773549 S(ph)GSSPSQSPCSDLEEPWLPR ddPTM_HeLa_A485_30min_R1 1 SGSSPSQSPCSDLEEPWLPR 20 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 S(0.331)GS(0.331)S(0.331)PS(0.007)QS(0.001)PCSDLEEPWLPR 70.942 0.004722 15299000 7816.5 9874.2 8522.8 10616 12844 9289.9 12065 12684 6546.1 13042 TRUE FALSE FALSE 9555.253458 11028.9018 11675.73838 11195.9252 11565.20626 9776.304799 9487.214188 9573.229112 7859.842226 9790.86942 0.975935134 1.126447644 1.19251293 1.143506743 1.181223624 0.998512428 0.968985877 0.977771095 0.802772654 1 13.25722126 -6.486660451 2.927816689 0.935573603 1.128674569 0.581967734 0.074817349 0.193749249 3.332467457 0.030366255 0.024629801 3.26E-07 6.486660451 0.193100966 S(ph)GSSS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 S(0.794)GS(0.23)S(0.205)S(0.77)PDSEITELKFPSINHD 129.32 1.39E-06 209930000 74953 72943 45038 6025.4 65114 68012 78283 68305 60995 59230 TRUE FALSE FALSE 69699.18176 67162.73103 62477.91976 14027.43571 56946.79496 59621.37094 58695.76541 52753.44259 66282.09571 44398.42248 1.569857168 1.512727869 1.407210353 0.315944462 1.282631044 1.342871382 1.32202367 1.188182815 1.492893036 1 15.4382208 -5.948109339 24.99999799 1.287441622 1.183485169 0.007412525 0.346311652 621.7169326 299528.5678 0.114834337 0.130209878 1.13E-06 5.948109339 -0.103956452 S(ph)GSSSPDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.274)GS(0.274)S(0.239)S(0.209)PDS(0.005)EITELKFPSINHD 101.47 0.00015996 246880000 87341 107020 57363 33717 89461 70031 109930 100780 83106 91502 TRUE FALSE FALSE 81218.84693 98539.34544 79575.48983 78494.87996 78239.96719 61391.28724 82424.35128 77834.59401 90309.69499 68589.30362 1.184132841 1.436657616 1.160173462 1.144418675 1.140702166 0.895056284 1.201708531 1.134792014 1.316673158 1 16.06569599 -4.925125139 7.876218449 1.122128928 1.309728532 0.283664128 0.11982384 0.29854886 27.23839768 0.030983731 0.064960516 1.19E-05 4.925125139 0.187599604 S(ph)GTFDLLEMDR ddPTM_HeLa_A485_30min_R1 1 SGTFDLLEMDR 11 0 H0YA31;H0YA26;E9PHT6;Q9NVE7 H0YA31 PANK4 Pantothenate kinase 4 1 0 S(0.973)GT(0.027)FDLLEMDR 80.469 0.0068689 17491000 19340 20229 16865 22093 23242 18941 23273 19149 17489 28289 TRUE FALSE FALSE 23642.11628 22594.60558 23104.06531 23299.88465 20927.94487 19932.72147 18300.53343 14452.67773 20998.88188 21237.07292 1.113247403 1.063922776 1.087911945 1.097132582 0.985443943 0.938581392 0.861725789 0.680540006 0.988784187 1 14.37429731 -6.175763556 1.654456028 0.859900821 1.089786277 0.536315849 0.08505539 0.261657825 1.424694691 0.034543818 0.033510979 6.67E-07 6.175763556 0.229885456 S(ph)GTFDLLEMDR ddPTM_HeLa_A486_30min_R1 4 SGTFDLLEMDR 11 0 H0YA31;H0YA26;E9PHT6;Q9NVE7 H0YA31 PANK4 Pantothenate kinase 4 1 0 S(0.992)GT(0.008)FDLLEMDR;S(0.995)GT(0.005)FDLLEMDR;S(0.5)GT(0.5)FDLLEMDR;S(0.5)GT(0.5)FDLLEMDR ;;; 169.09 4.00E-08 62582000 112693 137643 85107 49928.3 117808 128805 144223 133545 103851 175746 TRUE FALSE FALSE 104793.8026 126735.6674 118062.7096 116235.6056 103031.4221 112914.3487 108136.88 103139.7188 112852.8883 131738.0577 0.795470986 0.962027751 0.896192882 0.882323663 0.782093071 0.857112597 0.820847687 0.782915132 0.856646062 1 17.00731266 S(ph)GTLKSPPKGFDTTAINK ddPTM_HeLa_A485_30min_R1 1 SGTLKSPPKGFDTTAINK 18 2 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 S(0.36)GT(0.36)LKS(0.28)PPKGFDTTAINK 95.48 0.00023818 1026500000 694350 412600 233900 1532700 763670 679090 1407400 1397700 461730 1954600 TRUE FALSE FALSE 848805.762 460849.9809 320429.3434 1616427.52 687636.3334 714646.1023 1106697.493 1054911.883 554394.9758 1467354.192 0.578460038 0.314068671 0.218372187 1.101593282 0.468623279 0.487030402 0.754212922 0.718921096 0.377819465 1 20.48478572 -14 0.113536316 2.295990638 0.342062625 0.225052396 0.242162336 256.1622741 1.913791123 78.34469159 2.821476234 1.00E-14 14 -1.953928013 S(ph)GTPDPR ddPTM_HeLa_A485_30min_R1 1 SGTPDPR 7 0 Q2YD98 Q2YD98 UVSSA UV-stimulated scaffold protein A 1 0 S(0.5)GT(0.5)PDPR 72.485 0.019053 791050000 811810 730910 372740 1428900 322370 856990 521740 583970 854570 1432300 TRUE FALSE FALSE 992394.3338 816383.5664 510632.037 1506957.189 290273.7109 901860.6712 410265.9868 440750.4419 1026074.36 1075253.97 0.922939475 0.759247201 0.474894352 1.401489538 0.269958279 0.838742006 0.381552636 0.409903571 0.954262332 1 20.03624603 -4.340556874 4.081109333 0.69227132 0.927597195 0.028905101 0.33027958 0.772323315 21.80618999 0.079958693 0.429085788 4.57E-05 4.340556874 0.235325876 S(ph)GTPDPR ddPTM_HeLa_A486_30min_R1 1 SGTPDPR 7 0 Q2YD98 Q2YD98 UVSSA UV-stimulated scaffold protein A 1 0 S(0.5)GT(0.5)PDPR 75.213 0.016755 159960000 389950 230260 363000 168290 282840 604840 360090 288810 564300 597750 TRUE FALSE FALSE 362616.5187 212013.359 503563.3215 391787.6249 247363.5698 530220.9904 269991.6734 223054.2677 613213.9784 448069.5093 0.809286308 0.47317069 1.1238509 0.874390283 0.55206517 1.183345395 0.602566494 0.497811753 1.368568862 1 18.77336303 -7.769135108 24.99983206 1.184284428 0.771961658 0.314172176 0.24786139 230.3506236 748271.0052 0.218536442 0.060681507 1.70E-08 7.769135108 -0.412322771 S(ph)GTPTQDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_A485_30min_R1 3 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.466)GT(0.466)PT(0.069)QDEMMDKPTSSSVDTMSLLSK;S(0.5)GT(0.5)PT(0.001)QDEMMDKPTSSSVDTMSLLSK;S(0.494)GT(0.494)PT(0.012)QDEMMDKPTSSSVDTMSLLSK ;; 89.954 0.0022813 724970000 372041 225993 144443 679320 385480 362627 644560 541280 277511 942460 TRUE FALSE FALSE 454800.2369 252420.9155 197878.4765 716429.5315 347100.2577 381613.589 506844.4904 408530.2313 333204.9122 707522.0667 0.642807141 0.356767552 0.279678169 1.012589664 0.49058577 0.539366342 0.716365629 0.57740988 0.470946318 1 19.43241562 -14 0.315145801 4.942805865 0.546854654 0.30874343 0.193103313 398.0535651 3.576550817 1044.96214 0.18155329 1.00E-14 14 -4.395951211 S(ph)GTPTQDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_A486_30min_R1 4 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.5)GT(0.5)PT(0.001)QDEMMDKPTSSSVDTMSLLSK;S(0.499)GT(0.499)PT(0.002)QDEMMDKPTSSSVDTMSLLSK;S(0.39)GT(0.351)PT(0.256)QDEMMDKPT(0.002)S(0.001)SSVDTMSLLSK;S(0.451)GT(0.451)PT(0.093)QDEMMDKPT(0.001)S(0.002)S(0.002)S(0.001)VDTMSLLSK ;;; 114.76 0.0001323 2629360000 918380 743530 266562 618150 699050 1072640 1487220 1388990 584051 1871670 TRUE FALSE FALSE 854006.3045 684609.9749 369781.9452 1439084.44 611368.6306 940308.5826 1115101.826 1072747.298 634677.0109 1402991.649 0.608703769 0.487964397 0.263566747 1.025725592 0.435760705 0.670216806 0.794802896 0.764614172 0.452374047 1 20.42007499 -14 0.0944623 2.148862455 0.342683065 0.245711534 0.205602511 287.2616641 1.864958974 66.84835042 4.120477288 1.00E-14 14 -1.80617939 S(ph)GTTPKPVINSTPGR ddPTM_HeLa_A485_30min_R1 1 SGTTPKPVINSTPGR 15 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 S(0.361)GT(0.319)T(0.319)PKPVINSTPGR 61.102 0.012798 374420000 311810 273800 189740 425960 362250 308930 441360 427300 233810 530210 TRUE FALSE FALSE 381171.0588 305818.5283 259932.7217 449229.1162 326183.1181 325105.0971 347059.8304 322504.005 280733.5224 398038.4048 0.957623823 0.768314124 0.653034277 1.128607468 0.819476498 0.816768164 0.871925488 0.810233387 0.705292552 1 18.60254811 -9.416824116 14.40605604 1 0.83712314 0.131607099 0.125756198 0 0 0.12046359 0.029216712 3.83E-10 9.416824116 -0.16287686 S(ph)GVRGT(ph)PVR ddPTM_HeLa_A486_30min_R1 3 SGVRGTPVR 9 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 2 0 S(1)GVRGT(1)PVR;S(1)GVRGT(1)PVR;S(1)GVRGT(1)PVR ;; 108.36 0.00088395 5599410000 377079 412853 334495 169337 522266 374837 489722 460669 355898 443997 TRUE FALSE FALSE 350647.7093 380137.0247 464020.4221 394225.0938 456758.5283 328593.422 367188.3758 355784.725 386747.5252 332817.2613 1.053574289 1.142179415 1.39421982 1.184509158 1.372400358 0.987308834 1.103273233 1.069009233 1.162041667 1 18.34437073 -6.274537946 24.89341947 1.071073838 1.231197645 0.382496041 0.104667499 853.5565802 1622153.122 0.037300331 0.033095909 5.31E-07 6.274537946 0.160123807 S(ph)HDRLPYQR ddPTM_HeLa_A485_30min_R1 5 SHDRLPYQR 9 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)HDRLPYQR;S(1)HDRLPYQR;S(1)HDRLPYQR;S(1)HDRLPYQR;S(1)HDRLPYQR ;;;; 153.74 2.45E-05 2099100000 818634 1079073 849737 826213 849224 801563 1004994 991868 762236 1032047 TRUE FALSE FALSE 1000736.309 1205261.201 1164090.077 871346.9241 764672.2768 843531.5992 790268.8219 748610.8178 915209.7736 774776.6763 1.291644857 1.555624011 1.502484667 1.124642688 0.986958307 1.088741601 1.019995627 0.96622787 1.181256227 1 19.563421 -5.347887351 4.219420272 1.041898055 1.460780453 0.819883173 0.085854496 0.083404528 2.691727094 0.023865642 0.036735622 4.49E-06 5.347887351 0.418882398 S(ph)HDRLPYQR ddPTM_HeLa_A486_30min_R1 3 SHDRLPYQR 9 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)HDRLPYQR;S(1)HDRLPYQR;S(1)HDRLPYQR ;; 125.54 0.00014282 1277790000 429779 409987 253895 112280 313701 323853 365869 335823 333879 472084 TRUE FALSE FALSE 399653.7115 377498.137 352209.9435 261393.5143 274353.6954 283899.3096 274324.7064 259363.4339 362819.9005 353871.0936 1.12937654 1.066767373 0.995305776 0.738668738 0.775292756 0.80226759 0.775210836 0.732931959 1.025288324 1 18.43286439 -5.03900959 3.411505407 0.81858283 1.093013204 0.539563204 0.098250365 0.163036646 3.871707141 0.02634569 0.053927448 9.14E-06 5.03900959 0.274430374 S(ph)HEAEVLK ddPTM_HeLa_A485_30min_R1 6 SHEAEVLK 8 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK ;;;;; 152.54 0.00013848 8133900000 5840140 3848050 3826370 12158400 9364300 4085700 8251800 6323790 5453280 15035100 TRUE FALSE FALSE 7139258.995 4298045.974 5241903.492 12822582.61 8431957.412 4299620.934 6488735.519 4772870.587 6547703.276 11287126.27 0.632513434 0.380791875 0.464414357 1.136036073 0.747042003 0.380931411 0.574879324 0.422859679 0.580103661 1 23.42817488 -11.20727545 2.149870851 2.143479737 0.590166758 0.248088906 0.213572932 13622735.19 2477387.949 75762366.86 0.057768432 6.20E-12 11.20727545 -1.553312979 S(ph)HEAEVLK ddPTM_HeLa_A486_30min_R1 8 SHEAEVLK 8 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK ;;;;;;; 160.53 3.07E-05 16037190000 7088260 12019130 6272040 6909830 12604560 14312860 17497980 17318120 9414140 14022660 TRUE FALSE FALSE 6591409.578 11066690.37 8700741.859 16086433.44 11023578.55 12547084.86 13119800.33 13375162.13 10230165.24 10511294.66 0.627078756 1.052837992 0.827751684 1.530395062 1.048736517 1.193676446 1.248162167 1.272456206 0.973254538 1 23.32543704 -4.015012673 1.067375068 1.178150163 0.138711496 0.425043709 0.180921675 2.50546989 1.659290884 0.054379826 3.33185647 9.66E-05 4.015012673 -1.039438667 S(ph)HESQLGNR ddPTM_HeLa_A486_30min_R1 1 SHESQLGNR 9 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QLI1 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 S(1)HESQLGNR 124.39 0.00022418 126070000 26026 15690 54681 11283 47672 25690 18625 25172 16967 15628 TRUE FALSE FALSE 24201.7118 14446.66726 75854.94761 26267.39421 41692.53324 22520.629 13964.828 19440.8851 18437.71322 11714.64708 2.065936057 1.233214041 6.475222608 2.24226936 3.559008902 1.922433416 1.19208269 1.659536559 1.573902577 1 13.51602587 -6.421215325 4.099906025 1.422393738 3.144412218 0.288036643 1.312899924 0.329040123 9.649181804 0.492686997 0.424215907 3.79E-07 6.421215325 1.722018481 S(ph)HGLESVPVLPGSGEAGVSFDLPAQADTLHSANK ddPTM_HeLa_A485_30min_R1 1 SHGLESVPVLPGSGEAGVSFDLPAQADTLHSANK 34 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 S(0.687)HGLES(0.313)VPVLPGSGEAGVSFDLPAQADTLHSANK 172.11 8.85E-15 374750000 68338 70352 52200 84006 104980 77197 114900 127440 68659 124360 TRUE FALSE FALSE 83539.55234 78579.05442 71510.95222 88595.03507 94527.82259 81238.91555 90350.67635 96185.14018 82438.23152 93359.34068 0.894817291 0.841683905 0.765975335 0.948968089 1.012515962 0.870174478 0.967773291 1.030267989 0.883020712 1 16.51050675 -5.359064584 7.418880511 0.95976241 0.835261434 0.507539964 0.056384517 0.216283857 14.39423631 0.015732137 0.023395527 4.37E-06 5.359064584 -0.124500977 S(ph)HGRLSGSARPQELVGTFIQQEVGKPEDEASGSFFK ddPTM_HeLa_A486_30min_R1 1 SHGRLSGSARPQELVGTFIQQEVGKPEDEASGSFFK 36 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 S(0.312)HGRLS(0.312)GS(0.312)ARPQELVGT(0.063)FIQQEVGKPEDEASGSFFK 143.75 2.07E-09 404610000 86135 68250 27161 168600 64949 95915 135230 105830 54926 181810 TRUE FALSE FALSE 80097.3813 62841.62144 37678.4666 392509.3206 56802.49079 84081.98249 101394.0237 81734.81925 59687.0299 136283.5926 0.587725784 0.461109223 0.27647104 2.880092262 0.416796253 0.616963355 0.743992888 0.599740715 0.437961964 1 17.05625236 S(ph)HHAASTTTAPTPAAR ddPTM_HeLa_A485_30min_R1 4 SHHAASTTTAPTPAAR 16 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)HHAASTTTAPTPAAR;S(1)HHAASTTTAPTPAAR;S(0.648)HHAAS(0.112)T(0.112)T(0.112)T(0.017)APTPAAR;S(1)HHAASTTTAPTPAAR ;;; 144.74 5.87E-08 499069000 497365 834973 813982 488540 1006137 686886 765075 939910 700986 680631 TRUE FALSE FALSE 608002.1284 932615.8291 1115107.814 515227.7032 905962.4675 722850.2888 601610.4762 709395.5988 841667.4604 510962.2178 1.18991602 1.825214853 2.182368433 1.008347947 1.773051776 1.41468442 1.177406969 1.388352356 1.64722054 1 18.96285709 -5.90214751 1.093142157 1.341073036 1.67021119 0.11811992 0.346804289 1.101662919 2.810669528 0.159998112 0.206542036 1.25E-06 5.90214751 0.329138155 S(ph)HHAASTTTAPTPAAR ddPTM_HeLa_A486_30min_R1 4 SHHAASTTTAPTPAAR 16 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)HHAASTTTAPTPAAR;S(1)HHAASTTTAPTPAAR;S(1)HHAASTTTAPTPAAR;S(0.745)HHAAS(0.084)T(0.084)T(0.084)T(0.002)APTPAAR ;;; 139.27 1.20E-07 1027672000 702409 720709 800235 91381.6 1001371 623868 726040 729630 693141 488207 TRUE FALSE FALSE 653173.7563 663597.3941 1110107.423 212740.983 875769.7118 546901.5092 544377.1127 563509.1767 753223.02 365956.7895 1.78483847 1.813321717 3.033438523 0.581328149 2.393095953 1.494442855 1.487544782 1.539824353 2.058229391 1 18.48131379 -10.87815612 0.131261738 8.19E-12 2.214093814 0.138628098 0.60560436 102.5283768 2.005522836 39.63705418 5.518069344 1.32E-11 10.87815612 2.214093814 S(ph)HNDFVAILDLPEGEHQYK ddPTM_HeLa_A485_30min_R1 1 SHNDFVAILDLPEGEHQYK 19 0 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 S(1)HNDFVAILDLPEGEHQYK 99.711 0.00017229 27067000 42748 42685 32620 59375 45201 43040 73286 67915 43938 69965 TRUE FALSE FALSE 52257.14512 47676.63944 44687.49543 62618.5059 40700.62973 45293.50785 57627.84741 51258.73976 52755.95358 52524.01311 0.994919124 0.907711285 0.850801239 1.192188148 0.774895659 0.862339055 1.097171446 0.975910574 1.004415894 1 15.68068953 -6.75680411 24.99480536 1.017367022 0.930643639 0.139479693 0.108128292 254.3193644 1371377.495 0.042487378 0.031796288 1.75E-07 6.75680411 -0.086723383 S(ph)HNNFVAILDLPEGEHQYK ddPTM_HeLa_A485_30min_R1 4 SHNNFVAILDLPEGEHQYK 19 0 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK ;;; 150.06 1.03E-08 499587000 605360 657310 507236 797790 715250 663580 1130520 1148450 602790 914590 TRUE FALSE FALSE 740020.2435 734176.6867 694883.7043 841371.2476 644037.1986 698324.0227 888975.1665 866790.8368 723764.4239 686599.5448 1.07780474 1.069293873 1.012065489 1.225417718 0.938009941 1.017076152 1.294750591 1.262440157 1.054128901 1 19.38910938 -6.732663119 24.99990305 1.1747001 1.057445019 0.151287723 0.106719943 324.554803 281962.6419 0.040275694 0.031191948 1.85E-07 6.732663119 -0.117255081 S(ph)HNNFVAILDLPEGEHQYK ddPTM_HeLa_A486_30min_R1 4 SHNNFVAILDLPEGEHQYK 19 0 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK ;;; 162.01 1.70E-12 496114000 459261 553689 356267 268085 475836 502990 660930 649580 454025 639450 TRUE FALSE FALSE 427069.1755 509812.6671 494223.1236 624115.4283 416152.2119 440936.2078 495558.3234 501684.8142 493380.2526 479327.5579 0.890975636 1.063599743 1.031075963 1.302064565 0.868200055 0.919905815 1.033861532 1.046642961 1.029317519 1 18.87065236 S(ph)HS(ph)DNDRFK ddPTM_HeLa_A485_30min_R1 4 SHSDNDRFK 9 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(1)HS(1)DNDRFK;S(1)HS(1)DNDRFK;S(1)HS(1)DNDRFK;S(1)HS(1)DNDRFK ;;; 86.944 0.0044752 4610890000 4722140 5217420 3025120 10407230 6121430 3419040 8773800 6975640 3852970 13968580 TRUE FALSE FALSE 5772563.752 5827551.883 4144237.774 10975750.62 5511958.936 3598055.648 6899205.955 5264853.353 4626225.737 10486470.08 0.550477302 0.555721023 0.39519855 1.046658269 0.525625772 0.343114091 0.657914999 0.502061543 0.441161392 1 23.32202579 -10.76219261 2.662218974 1.102123957 0.561179207 0.341532098 0.184243658 216683701.9 165018847.7 144893067.8 0.049084925 1.73E-11 10.76219261 -0.54094475 S(ph)HS(ph)DNDRFK ddPTM_HeLa_A486_30min_R1 4 SHSDNDRFK 9 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(1)HS(1)DNDRFK;S(1)HS(1)DNDRFK;S(1)HS(1)DNDRFK;S(1)HS(1)DNDRFK ;;; 122.46 0.00037935 5123430000 8305600 7549200 3112970 5863950 5960410 9230100 11488000 10513000 6039490 18720700 TRUE FALSE FALSE 7723420.33 6950973.898 4318395.352 13651571.95 5212799.799 8091384.107 8613580.892 8119419.397 6562997.856 14032914.87 0.550378906 0.495333576 0.307733311 0.97282511 0.371469495 0.576600384 0.613812666 0.578598208 0.467686002 1 23.74231138 -10.11581673 3.999189539 1.000108447 0.550578992 0.392038166 0.16873946 109458763.5 216096647.4 189188.2593 0.040309722 7.66E-11 10.11581673 -0.449529455 S(ph)HS(ph)DNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A486_30min_R1 1 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.999)HS(0.908)DNDRPNCS(0.092)WNT(0.001)QYSSAYYTSR 96.748 0.0018272 495000000 142300 147300 77815 47904 127570 144190 149700 141070 128650 230540 TRUE FALSE FALSE 132325.5048 135627.4115 107947.052 111522.9329 111568.9811 126401.3038 112243.4766 108951.4405 139801.4856 172811.2834 0.765722598 0.784829606 0.624652799 0.645345204 0.645611669 0.731441265 0.649514745 0.630464854 0.80898355 1 17.39883789 -8.042301365 4.120651413 0.999748849 0.684507883 0.76119713 0.054673888 0.111892781 5.572443458 0.056556668 0.014841686 9.07E-09 8.042301365 -0.315240966 S(ph)HS(ph)KS(ph)PER ddPTM_HeLa_A486_30min_R1 1 SHSKSPER 8 1 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 3 0 S(1)HS(1)KS(1)PER 53.448 0.0055554 0 357330 313000 181410 501180 242260 555130 571010 374530 330690 1247100 TRUE FALSE FALSE 332283.0123 288196.7401 251656.8103 1166772.368 211873.4918 486643.7047 428137.2585 289257.6949 359354.4755 934818.0427 0.355452074 0.308291803 0.269204058 1.24812778 0.226646772 0.520575858 0.457989939 0.309426735 0.384411146 1 19.83432605 -10.92844218 2.399548844 1.364726288 0.458254156 0.256775271 0.278895269 40845265.4 19546425.19 83498616.86 0.073682969 1.18E-11 10.92844218 -0.906472132 S(ph)HS(ph)PMSNR ddPTM_HeLa_A485_30min_R1 1 SHSPMSNR 8 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.995)HS(0.797)PMS(0.207)NR 83.045 0.0090122 124640000 221090 296430 235800 302340 365490 197710 380180 357510 248290 409100 TRUE FALSE FALSE 270270.7077 331094.9099 323032.2325 318856.0686 329100.5323 208061.7899 298951.4372 269830.1119 298119.5255 307118.8989 0.880019786 1.078067521 1.051814895 1.038217022 1.071573692 0.677463323 0.97340619 0.878585176 0.970697429 1 18.22843777 S(ph)HS(ph)PMSNR ddPTM_HeLa_A486_30min_R1 4 SHSPMSNR 8 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)HS(0.839)PMS(0.161)NR;S(1)HS(0.855)PMS(0.145)NR;S(1)HS(0.997)PMS(0.003)NR;S(1)HS(0.997)PMS(0.003)NR ;;; 97.813 0.0034418 9388220000 6166730 6075480 4356890 1897198 5994290 6338520 7196620 6501350 5518380 7310640 TRUE FALSE FALSE 5734474.072 5594036.838 6043994.49 4416772.823 5242430.254 5556537.848 5395949.558 5021134.528 5996717.622 5480008.16 1.046435316 1.020808122 1.10291706 0.805979242 0.956646432 1.013965251 0.984660862 0.916264061 1.094289907 1 22.38574661 S(ph)HS(ph)PMSNRR ddPTM_HeLa_A485_30min_R1 6 SHSPMSNRR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)HS(0.568)PMS(0.432)NRR;S(1)HS(0.989)PMS(0.011)NRR;S(1)HS(0.975)PMS(0.025)NRR;S(1)HS(1)PMSNRR;S(1)HS(0.995)PMS(0.005)NRR;S(1)HS(0.992)PMS(0.008)NRR ;;;;; 92.247 0.0014197 3127001000 1869657 2987907 2209982 2351286 3345000 2076512 3582174 3530950 2255626 3239787 TRUE FALSE FALSE 2285555.749 3337316.732 3027546.307 2479730.8 3011960.055 2185234.957 2816813.261 2664978.976 2708309.448 2432167.725 0.939719628 1.372157314 1.24479339 1.019555837 1.238385011 0.898472147 1.158149264 1.095721709 1.113537286 1 21.21381129 -5.255207467 24.86855827 1.081757996 1.204216832 0.121892724 0.13248735 885.1684921 3532271.747 0.03454358 0.057933777 5.56E-06 5.255207467 0.122458836 S(ph)HS(ph)PMSNRR ddPTM_HeLa_A486_30min_R1 2 SHSPMSNRR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)HS(0.978)PMS(0.022)NRR;S(1)HS(0.982)PMS(0.019)NRR ; 56.205 0.017519 128115000 175349 150353 127740 60280 182156 165020 189641 185561 145642 205790 TRUE FALSE FALSE 163057.9406 138438.4807 177204.349 140334.8864 159308.2959 144661.5102 142190.816 143312.8111 158266.3658 154258.8445 1.057041112 0.897442744 1.148746767 0.909736403 1.032733627 0.93778422 0.921767672 0.929041129 1.025979199 1 17.23499368 S(ph)HS(ph)RS(ph)PATR ddPTM_HeLa_A485_30min_R1 2 SHSRSPATR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)HS(1)RS(1)PATR;S(1)HS(1)RS(1)PATR ; 115.91 0.00021739 1696600000 3354700 3147900 1625190 7432800 2361100 2869800 3789600 4219200 2565700 6587500 TRUE FALSE FALSE 4100941.441 3516019.522 2226415.411 7838835.043 2126020.594 3020058.29 2979921.002 3184434.585 3080612.456 4945357.484 0.829250758 0.710973784 0.450203128 1.585089666 0.429902307 0.610685537 0.602569382 0.643924043 0.622930186 1 22.23764338 HTGPNS(ph)PDTANDGFVRL ddPTM_HeLa_A486_30min_R1 5 HTGPNSPDTANDGFVRL 17 1 E7EQJ0 E7EQJ0 HNRNPH1 1 0 HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL ;;;; 275.2 1.28E-59 3098630000 3901250 1679350 717567 499969 1211090 710370 1010220 1266780 387094 1015830 TRUE FALSE FALSE 3627792.521 1546272.19 995428.1595 1163953.099 1059183.799 622731.7719 757452.271 978361.8476 420647.6196 761459.5561 4.764261598 2.030668835 1.307263336 1.528581643 1.390991538 0.817813326 0.994737363 1.284850705 0.552422799 1 19.53840789 -2.166470918 0.936323147 1.043315527 200 0.948803551 0.256556655 19.7420288 0.423988013 0.086508384 7979.843093 0.006815992 2.166470918 198.9566844 up S(ph)HSANDSEEFFREDDGGADLHNATNLR ddPTM_HeLa_A486_30min_R1 1 SHSANDSEEFFREDDGGADLHNATNLR 27 1 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 S(0.521)HS(0.476)ANDS(0.003)EEFFREDDGGADLHNATNLR 45.349 0.033695 41327000 8799.8 9787.2 9690.4 5560.6 17507 9858.7 12595 12677 10340 11633 TRUE FALSE FALSE 8182.979462 9011.626628 13442.7824 12945.35782 15311.10881 8642.43383 9443.597784 9790.723837 11236.27953 8720.021082 0.938412807 1.033440922 1.541599759 1.484555794 1.755856857 0.991102401 1.082978779 1.122786716 1.28856105 1 13.09011591 S(ph)HSDNDRFK ddPTM_HeLa_A485_30min_R1 4 SHSDNDRFK 9 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.994)HS(0.006)DNDRFK;S(0.962)HS(0.038)DNDRFK;S(0.59)HS(0.41)DNDRFK;S(0.996)HS(0.004)DNDRFK ;;; 138.24 9.35E-05 3770510000 1441200 1502940 822112 1834210 1256930 1697950 2286310 2893570 1335830 2472350 TRUE FALSE FALSE 1761789.968 1678695.759 1126245.44 1934408.248 1131785.636 1786852.036 1797821.191 2183917.421 1603918.828 1856038.645 0.94922052 0.904450866 0.606800641 1.042224122 0.609785598 0.962723509 0.96863349 1.176655145 0.86416241 1 20.82379532 -6.503327859 24.16641134 1.009740434 0.823171486 0.259672012 0.146173449 650.2751632 803792.7789 0.049579803 0.043061149 3.14E-07 6.503327859 -0.186568948 S(ph)HSDNDRFK ddPTM_HeLa_A486_30min_R1 4 SHSDNDRFK 9 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.913)HS(0.087)DNDRFK;S(0.934)HS(0.066)DNDRFK;S(0.991)HS(0.009)DNDRFK;S(0.955)HS(0.045)DNDRFK ;;; 137.16 0.00010041 1795090000 1302377 805079 691553 633874 868114 1697940 1464763 1149824 1056518 1926270 TRUE FALSE FALSE 1211087.098 741281.608 959340.842 1475690.706 759227.0473 1488465.426 1098263.805 888034.1757 1148097.831 1443919.454 0.838749762 0.51338155 0.664400524 1.02200348 0.525809833 1.030850732 0.760612929 0.615016422 0.795125952 1 20.46155884 -14 0.281172701 2.830182668 0.732395117 0.157990111 0.171696975 438.9675828 4.205171103 469.7154119 0.193408215 1.00E-14 14 -2.09778755 S(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 5 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.788)HS(0.158)DNDRPNCS(0.054)WNTQYSSAYYTSR;S(0.997)HS(0.002)DNDRPNCSWNTQYSSAYYTSR;S(0.472)HS(0.472)DNDRPNCS(0.057)WNTQYSSAYYTSR;S(0.763)HS(0.237)DNDRPNCSWNTQYSSAYYTSR;S(0.544)HS(0.124)DNDRPNCS(0.333)WNTQYSSAYYTSR ;;;; 227.24 1.45E-38 5398450000 450999 592984.6 530485 485131 701221 502437 706651 676785 479579 656015.4 TRUE FALSE FALSE 551322.1716 662328.9907 726733.4768 511632.4781 631404.9751 528743.8244 555669.241 510802.4176 575826.1063 492482.8338 1.119474901 1.344877314 1.475652402 1.038883882 1.282085246 1.073628943 1.128301745 1.037198421 1.169230817 1 18.90971391 -5.879699781 1.133282299 1.083131388 1.295974528 0.328537999 0.119810811 0.560392258 1.530587169 0.052800386 0.069140449 1.32E-06 5.879699781 0.21284314 S(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A486_30min_R1 9 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.495)HS(0.495)DNDRPNCS(0.009)WNTQYSSAYYTSR;S(0.91)HS(0.09)DNDRPNCSWNTQYSSAYYTSR;S(0.743)HS(0.229)DNDRPNCS(0.029)WNTQYSSAYYTSR;S(0.687)HS(0.313)DNDRPNCSWNTQYSSAYYTSR;S(0.38)HS(0.38)DNDRPNCS(0.24)WNTQYSSAYYTSR;S(0.49)HS(0.49)DNDRPNCS(0.02)WNTQYSSAYYTSR;S(0.999)HS(0.001)DNDRPNCSWNTQYSSAYYTSR;S(0.81)HS(0.189)DNDRPNCS(0.001)WNTQYSSAYYTSR;S(0.497)HS(0.497)DNDRPNCS(0.006)WNTQYSSAYYTSR ;;;;;;;; 256.53 1.89E-61 22129650000 1056730 1124812.5 834015 382530 1212357.1 1084331.5 1246110.3 1216773 1060434.7 1264317.3 TRUE FALSE FALSE 982658.684 1035678.261 1156967.944 890549.172 1060291.968 950557.7042 934320.3229 939740.3499 1152354.034 947724.0188 1.036861644 1.092805754 1.220785715 0.939671417 1.118777141 1.00298999 0.985856963 0.991575956 1.215917304 1 19.85410748 -5.265919641 24.99986913 1.035981936 1.114416506 0.156371609 0.085540207 730.356368 4075388.076 0.023482541 0.036217234 5.42E-06 5.265919641 0.07843457 S(ph)HSGTSPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A485_30min_R1 2 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.281)HS(0.255)GT(0.232)S(0.232)PDNTAPPPPPPRPQPSHSR;S(0.293)HS(0.262)GT(0.262)S(0.183)PDNTAPPPPPPRPQPSHSR ; 68.934 0.0063797 3176210000 150470 219213 188873 140057 301849 232781 302452 434170 182310 210314 TRUE FALSE FALSE 183941.5324 244848.0535 258744.9824 147707.9593 271795.8537 244969.0532 237830.6594 327689.1267 218897.9448 157886.5903 1.165023147 1.55078435 1.638802775 0.93553201 1.721462558 1.551550722 1.506338562 2.075471552 1.386425182 1 17.26852912 S(ph)HSGTSPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A486_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.267)HS(0.244)GT(0.244)S(0.244)PDNTAPPPPPPRPQPSHSR 61.112 0.012989 304800000 50889 47761 40816 15988 56779 54869 57797 57094 48475 47344 TRUE FALSE FALSE 47321.94389 43976.24442 56621.04829 37220.87199 49657.24838 48099.82065 43335.57929 44094.94255 52676.85203 35488.75424 1.333434912 1.239159992 1.595464521 1.048807511 1.399238983 1.355353877 1.221107368 1.242504661 1.484325194 1 15.11507431 -10.24520484 3.998379285 0.999739291 1.319406705 0.313890705 0.143703985 17886155.34 15458386.49 42226.81578 0.032748317 5.69E-11 10.24520484 0.319667414 S(ph)HSLPSSIIF ddPTM_HeLa_A485_30min_R1 1 SHSLPSSIIF 10 0 Q86Z20-2;Q86Z20 Q86Z20-2 CCDC125 Coiled-coil domain-containing protein 125 1 0 S(0.499)HS(0.499)LPS(0.001)SIIF 70.028 0.01399 46103000 81177 105410 98399 90265 128190 96707 127020 139580 90362 117620 TRUE FALSE FALSE 99234.54359 117736.7826 134800.8848 95195.94839 115426.9535 101770.429 99881.13934 105347.7861 108496.8246 88299.49864 1.123840397 1.333379967 1.526632505 1.078102932 1.307220939 1.152559534 1.131163154 1.193073435 1.228736587 1 16.43011763 -5.289766648 24.98907527 1.169024456 1.328493986 0.299062793 0.119561117 907.0866436 800190.1646 0.033226475 0.049292809 5.13E-06 5.289766648 0.15946953 S(ph)HSLPSSIIF ddPTM_HeLa_A486_30min_R1 3 SHSLPSSIIF 10 0 Q86Z20-2;Q86Z20 Q86Z20-2 CCDC125 Coiled-coil domain-containing protein 125 1 0 S(0.5)HS(0.5)LPS(0.001)SIIF;S(0.565)HS(0.435)LPSSIIF;S(0.606)HS(0.393)LPSSIIF ;; 77.533 0.0092165 118499000 261938 266720 211116 63965 290884 247664 275985 276509 238316 260527 TRUE FALSE FALSE 243577.4988 245584.1358 292865.7691 148913.7526 254398.6163 217109.7337 206930.6339 213553.9368 258973.4228 195289.3435 1.247264672 1.257539871 1.499650539 0.76252882 1.302675363 1.111733646 1.059610475 1.093525807 1.326101149 1 17.5752537 -5.225958954 24.99986669 1.105669388 1.327090446 0.31768969 0.161122701 771.7752971 543799.8175 0.041945751 0.07264839 5.94E-06 5.225958954 0.221421058 S(ph)HSLSQHTATSSK ddPTM_HeLa_A485_30min_R1 1 SHSLSQHTATSSK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(0.529)HS(0.418)LS(0.053)QHTATSSK 104.41 0.00028962 0 100230 125090 113660 60361 176210 107250 163990 161590 116930 109510 TRUE FALSE FALSE 122525.8177 139718.1874 155707.5638 63658.36859 158665.9137 112865.4442 128952.1968 121959.7991 140396.7785 82211.17238 1.490379156 1.699503648 1.893995175 0.774327464 1.929979942 1.372872335 1.568548326 1.483494221 1.707757892 1 16.32704685 -10.0657929 4.401453716 0.999959879 1.543685164 0.220415575 0.308433294 197195809.6 267057586.9 107118.0642 0.072980997 8.59E-11 10.0657929 0.543725285 S(ph)HSPMS(ph)NR ddPTM_HeLa_A485_30min_R1 1 SHSPMSNR 8 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.994)HS(0.209)PMS(0.798)NR 92.112 0.0074896 720020000 153110 249750 187170 224470 292580 165420 304970 285950 193890 334630 TRUE FALSE FALSE 187168.7913 278956.09 256411.9718 236732.2277 263449.7079 174081.1354 239810.6681 215820.3141 232801.9445 251212.8994 0.745060432 1.110436966 1.020695881 0.942356974 1.048710908 0.692962566 0.954611283 0.859113185 0.926711746 1 17.93855102 S(ph)HSPMS(ph)NR ddPTM_HeLa_A486_30min_R1 2 SHSPMSNR 8 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.969)HS(0.251)PMS(0.781)NR;S(1)HS(0.248)PMS(0.752)NR ; 84.479 0.011983 199637000 394230 384570 273680 164978 397110 413620 481120 446800 332670 554350 TRUE FALSE FALSE 366596.5128 354095.2726 379656.2254 384077.1215 347300.7609 362591.7698 360738.6872 345073.3936 361506.1035 415537.1518 0.882223193 0.852138662 0.913651701 0.924290692 0.835787509 0.872585684 0.868126197 0.830427297 0.869973002 1 18.66461794 -10.00126376 5.809831659 1.000000202 0.871900575 0.647013222 0.028332998 7.82E-08 1.34E-08 0.028972373 0.007026821 9.97E-11 10.00126376 -0.128099627 S(ph)HSPMS(ph)NRR ddPTM_HeLa_A486_30min_R1 2 SHSPMSNRR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.993)HS(0.087)PMS(0.92)NRR;S(0.963)HS(0.05)PMS(0.987)NRR ; 68.359 0.0075471 118079000 363200 332060 264150 104890 337980 333600 391540 359230 326050 417210 TRUE FALSE FALSE 337741.5556 305746.3563 366435.9542 244189.2208 295587.3969 292443.8238 293572.5507 277441.1709 354312.2765 312737.9004 1.079950831 0.977644078 1.171703058 0.78081109 0.945160137 0.935108356 0.938717534 0.887136387 1.132936801 1 18.25459454 -5.245438439 24.945092 0.940238878 1.06655378 0.286514489 0.093880053 1050.009774 1636938.475 0.024576902 0.042398207 5.68E-06 5.245438439 0.126314902 S(ph)HSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGK ddPTM_HeLa_A485_30min_R1 1 SHSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGK 39 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.5)HS(0.5)VGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGK 191.39 5.34E-22 186340000 60698 49673 40512 72214 71100 62050 100340 90814 46869 122040 TRUE FALSE FALSE 74200.06069 55481.82525 55499.07464 76158.86796 64021.03435 65298.84205 78901.5393 68541.72411 56275.17839 91617.67398 0.809888065 0.605579937 0.605768213 0.831268299 0.69878476 0.712731935 0.861204349 0.748127748 0.614239327 1 16.48333832 -11.37260396 2.375337376 3.138599987 0.721360092 0.470223049 0.088890618 10761386.02 1287024.937 123732703.6 0.023648132 4.24E-12 11.37260396 -2.417239895 S(ph)HSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGK ddPTM_HeLa_A486_30min_R1 1 SHSVGGPLQNIDFTQRPFHGISTVSLPNSLQEVVDPLGK 39 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.536)HS(0.457)VGGPLQNIDFT(0.005)QRPFHGIS(0.001)T(0.001)VSLPNSLQEVVDPLGK 192.79 3.99E-22 157190000 60641 63511 46018 13430 77034 83075 91155 95573 76094 81970 TRUE FALSE FALSE 56390.37905 58478.15706 63837.402 31265.71871 67371.67741 72826.05114 68347.05486 73813.11424 82689.88919 61444.17846 0.917749744 0.951728195 1.038949557 0.508847534 1.096469659 1.185239236 1.112343863 1.201303624 1.345772557 1 15.90698871 -5.981000764 24.99705162 1.173851976 0.865488688 0.490693528 0.152281897 207.9199809 273556.3083 0.046961175 0.053241447 1.04E-06 5.981000764 -0.308363288 S(ph)HSWVNSAYAPGGSK ddPTM_HeLa_A485_30min_R1 1 SHSWVNSAYAPGGSK 15 0 K7EKT0;K7ESB7 K7EKT0 DOCK6 1 0 S(0.499)HS(0.499)WVNS(0.002)AYAPGGSK 128.38 1.61E-05 324900000 87770 89798 72922 94732 112910 89740 134810 134530 76483 125970 TRUE FALSE FALSE 107294.1337 100299.095 99898.88234 99906.96929 101668.2839 94438.64764 106006.7422 101536.3066 91832.43656 94567.99731 1.134571279 1.060602929 1.05637092 1.056456435 1.075081284 0.998632205 1.120957885 1.073685702 0.971073082 1 16.52906442 -1.000000006 0.06795686 0.927224548 1.352821124 0.32579494 0.040820505 372.1801047 1.876505446 2.116287751 15.24223756 0.099999999 1.000000006 0.425596576 S(ph)HTEEDCTEELFDFLHAR ddPTM_HeLa_A485_30min_R1 2 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 1 0 S(0.493)HT(0.493)EEDCT(0.015)EELFDFLHAR;S(0.999)HT(0.001)EEDCTEELFDFLHAR ; 263.24 4.05E-58 48960000 15645.5 16232.7 18837.5 21459.8 31384 19946.8 26654 25226 18537.4 32141 TRUE FALSE FALSE 19125.7875 18130.97306 25806.27514 22632.09453 28259.29876 20991.1836 20959.15516 19039.28395 22257.68614 24128.84021 0.792652582 0.751423313 1.069519915 0.937968603 1.171183468 0.869962394 0.868635002 0.789067513 0.922451554 1 14.55847095 -4.738350409 24.92823369 0.947256524 0.772037764 0.329638929 0.103249455 290.7229147 313876.8272 0.028143314 0.074352794 1.83E-05 4.738350409 -0.175218761 S(ph)HTEEDCTEELFDFLHAR ddPTM_HeLa_A486_30min_R1 4 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 1 0 S(0.985)HT(0.015)EEDCTEELFDFLHAR;S(0.626)HT(0.366)EEDCT(0.008)EELFDFLHAR;S(0.5)HT(0.5)EEDCT(0.001)EELFDFLHAR;S(0.888)HT(0.112)EEDCTEELFDFLHAR ;;; 218.88 1.74E-34 80520000 24501.6 36336.3 32059.7 16032.7 41094 35004.8 37698.8 43264.9 29090.3 36879.8 TRUE FALSE FALSE 22784.16437 33456.87925 44474.07443 37324.93585 35939.60733 30686.26368 28266.1615 33414.42674 31611.87063 27644.85803 0.82417368 1.21023878 1.608764797 1.350158348 1.300046732 1.110017047 1.022474468 1.208703141 1.143499113 1 14.75472354 -6.266891036 22.13298649 1.105328634 1.280517165 0.149565623 0.18875657 187.0510669 759395.5872 0.069632588 0.063356199 5.41E-07 6.266891036 0.175188531 S(ph)HTSEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A485_30min_R1 2 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.311)HT(0.311)S(0.311)EGAHLDIT(0.062)PNS(0.003)GAAGNSAGPK;S(0.354)HT(0.354)S(0.293)EGAHLDITPNSGAAGNSAGPK ; 160.41 7.11E-14 12427200000 1393030 1577710 1300310 635870 2092630 1706120 2409180 2831740 1887340 1568370 TRUE FALSE FALSE 1702904.718 1762209.46 1781348.779 670605.968 1884280.41 1795449.805 1894439.012 2137251.325 2266111.826 1177404.223 1.446321225 1.496690284 1.512945805 0.569563074 1.600368313 1.524922172 1.608996278 1.815223085 1.924667657 1 20.16717828 -5.951338969 24.99989138 1.620613591 1.266008085 0.171565694 0.34007584 189.9323275 97577.86527 0.106004098 0.12019735 1.12E-06 5.951338969 -0.354605506 S(ph)HTSEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A486_30min_R1 5 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.478)HT(0.478)S(0.043)EGAHLDITPNSGAAGNSAGPK;S(0.454)HT(0.454)S(0.092)EGAHLDITPNSGAAGNSAGPK;S(0.531)HT(0.407)S(0.062)EGAHLDITPNSGAAGNSAGPK;S(0.457)HT(0.457)S(0.085)EGAHLDITPNSGAAGNSAGPK;S(0.442)HT(0.34)S(0.217)EGAHLDITPNSGAAGNSAGPK ;;;; 247.96 1.13E-49 27254030000 12881080 13610810 8394000 794002 14328560 10957360 13204910 13081230 10900330 5241820 TRUE FALSE FALSE 11978182.81 12532239.85 11644381.6 1848476.783 12531338.4 9605552.329 9900901.851 10102919.49 11845179.38 3929234.153 3.048477729 3.189486642 2.963524479 0.470442002 3.189257221 2.444637289 2.519804487 2.571218486 3.014628021 1 21.90581671 -10.20488966 4.057438315 0.999078697 2.575964696 0.285101668 0.759742243 25663508.28 21517183.43 187613.5878 0.185728389 6.24E-11 10.20488966 1.576885999 S(ph)HTSSNYDSYKK ddPTM_HeLa_A485_30min_R1 1 SHTSSNYDSYKK 12 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 S(0.979)HT(0.016)S(0.003)S(0.003)NYDSYKK 56.482 0.022266 540680000 107060 144270 96817 79898 148550 118510 148780 158180 103470 126760 TRUE FALSE FALSE 130875.1276 161141.1215 132633.6372 84262.62543 133759.8404 124715.0003 116991.9376 119386.107 124235.4799 95161.06484 1.37530121 1.693351391 1.393780507 0.885473755 1.405615213 1.310567516 1.229409715 1.254568843 1.305528476 1 16.5380838 -1 0.267136802 1.161062904 3.787825897 0.246972835 0.183513187 76.27815916 1.061893421 0.224669262 92.06486583 0.1 1 2.626762993 S(ph)HWIFEARK ddPTM_HeLa_A485_30min_R1 1 SHWIFEARK 9 1 I3L3Y3;A0A087WYU4;A6NH52-2;A6NH52 I3L3Y3 TVP23A Golgi apparatus membrane protein TVP23 homolog;Golgi apparatus membrane protein TVP23 homolog A 1 0 S(1)HWIFEARK 63.32 0.01467 3999100000 1346400 2721300 3035500 359480 2680800 2286700 1496800 2202000 2532800 490540 TRUE FALSE FALSE 1645902.035 3039532.363 4158457.768 379117.4821 2413890.139 2406428.076 1176996.452 1661956.047 3041109.728 368257.4057 4.469433634 8.253825492 11.29225836 1.02949045 6.554899105 6.534635933 3.196124325 4.513028174 8.258108813 1 18.49035501 -5.257029626 24.99805571 4.710731203 8.030037479 0.265647242 2.689530279 546.3161091 3096951.228 0.72464521 1.201820124 5.53E-06 5.257029626 3.319306276 S(ph)HWIFEARK ddPTM_HeLa_A486_30min_R1 2 SHWIFEARK 9 1 I3L3Y3;A0A087WYU4;A6NH52-2;A6NH52 I3L3Y3 TVP23A Golgi apparatus membrane protein TVP23 homolog;Golgi apparatus membrane protein TVP23 homolog A 1 0 S(1)HWIFEARK;S(1)HWIFEARK ; 73.499 0.0073857 4706100000 4218800 6525900 7211400 130941 8005800 3434790 1943860 3270540 5394900 588490 TRUE FALSE FALSE 3923083.906 6008763.917 10003847.21 304837.2654 7001637.913 3011040.532 1457485.668 2525909.437 5862534.276 441128.2736 8.893295082 13.62135296 22.67786448 0.691039962 15.87211324 6.825770898 3.303995131 5.726020273 13.2898629 1 18.75083871 -5.831596629 1.071349661 6.265257514 13.83209811 0.196688716 6.043382991 0.852874219 2.094165169 2.715322175 3.806379388 1.47E-06 5.831596629 7.566840598 S(ph)IAIGS(ph)QPVLTVGT(ph)T(ph)HIS(ph)K ddPTM_HeLa_A485_30min_R1 1 SIAIGSQPVLTVGTTHISK 19 0 Q96DZ1-3;Q96DZ1 Q96DZ1-3 ERLEC1 Endoplasmic reticulum lectin 1 5 0 S(0.997)IAIGS(0.998)QPVLT(0.102)VGT(0.97)T(0.97)HIS(0.963)K 40.625 0.024071 412280000 23695 44414 43936 17199 48816 28579 28925 41182 37324 17553 TRUE FALSE FALSE 28965.871 49607.83095 60189.75473 18138.53782 43955.70764 30075.35225 22744.93745 31082.04993 44814.58444 13177.36014 2.198154311 3.764625875 4.567664092 1.376492532 3.335699045 2.282350329 1.726061762 2.358746335 3.40087726 1 13.68577376 -5.264561271 24.99387024 2.297647495 3.535595842 0.301929239 0.898005047 345.3816544 2765131.418 0.245556606 0.382438703 5.44E-06 5.264561271 1.237948347 S(ph)IDAALFR ddPTM_HeLa_A485_30min_R1 1 SIDAALFR 8 0 Q5FWE3-2;Q5FWE3 Q5FWE3-2 PRRT3 Proline-rich transmembrane protein 3 1 0 S(1)IDAALFR 112.71 0.0011049 17590000 31764 35355 25729 33492 31027 35867 40211 41035 25924 57663 TRUE FALSE FALSE 38829.79222 39489.4597 35247.22777 35321.58315 27937.84294 37744.94066 31619.59136 30971.10191 31126.70901 43288.67531 0.896996546 0.912235346 0.814236692 0.815954355 0.645384566 0.871935683 0.730435642 0.715455063 0.7190497 1 15.40170203 -4.957944622 2.058361303 0.768454893 0.908834103 0.183676482 0.094156582 0.460293257 3.822358047 0.025710523 0.071465955 1.10E-05 4.957944622 0.14037921 S(ph)IDDLEEK ddPTM_HeLa_A486_30min_R1 3 SIDDLEEK 8 0 P09493-3;P09493-8;P09493-9;Q6ZN40;P09493-7;P09493-2;H7BYY1 P09493-3 TPM1 Tropomyosin alpha-1 chain 1 0 S(1)IDDLEEK;S(1)IDDLEEK;S(1)IDDLEEK ;; 177.78 9.81E-06 1106600000 1871530 1795650 842890 1426320 1657500 2376930 3200070 2784210 1180060 2962350 TRUE FALSE FALSE 1740345.412 1653356.154 1169279.581 3320545.042 1449600.894 2083688.543 2399378.639 2150306.162 1282348.551 2220558.278 0.783742282 0.744567783 0.526570094 1.495364961 0.65280921 0.938362467 1.080529461 0.968362859 0.577489257 1 21.082491 S(ph)IDNWTKTQWR ddPTM_HeLa_A486_30min_R1 1 SIDNWTKTQWR 11 1 A0A0C4DFR0;A0A087WYC6;Q96DT5 A0A0C4DFR0 DNAH11 "Dynein heavy chain 11, axonemal" 1 0 S(0.497)IDNWT(0.497)KT(0.005)QWR 44.457 0.031259 142510000 150610 225200 353240 7297.7 379620 126240 105010 166440 194040 38717 TRUE FALSE FALSE 140053.0168 207354.3318 490023.9881 16989.41441 332004.5198 110665.7923 78735.38732 128545.2454 210859.5434 29022.01119 4.825751593 7.144726478 16.8845634 0.585397555 11.43974887 3.813167584 2.712954205 4.42923285 7.265504173 1 14.82485988 -6.29558698 23.92423662 3.987796061 8.180847571 0.208294966 4.218021699 636.2348764 445751.6484 1.451904766 1.280549381 5.06E-07 6.29558698 4.19305151 S(ph)IDPALSMLIK ddPTM_HeLa_A486_30min_R1 2 SIDPALSMLIK 11 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 S(1)IDPALSMLIK;S(1)IDPALSMLIK ; 142.91 1.08E-06 47754000 95352 104430 61347 45065 112896 114784 114070 120053 77171 120943 TRUE FALSE FALSE 88668.3172 96154.58647 85102.20133 104913.5975 98735.53097 100623.1171 85528.47949 92719.55264 83860.24442 90658.08559 0.978051948 1.06062891 0.938716065 1.157244793 1.089097904 1.109918839 0.943418107 1.022738921 0.925016714 1 16.46814808 -6.770989082 24.99993183 0.974688342 1.056666505 0.288684738 0.063644722 283.1351413 741205.3467 0.026895113 0.018393968 1.69E-07 6.770989082 0.081978163 S(ph)IDPDSIQSALLASGLGSK ddPTM_HeLa_A485_30min_R1 1 SIDPDSIQSALLASGLGSK 19 0 A3KN83-3;A3KN83-2;A3KN83 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 0 S(0.999)IDPDSIQSALLASGLGSK 80.975 0.00055071 0 12289 14302 11214 14225 18811 14261 18036 17102 11483 19286 TRUE FALSE FALSE 15022.64565 15974.49449 15362.52525 15002.07573 16938.11079 15007.68391 14182.46126 12907.70769 13787.53277 14478.35513 1.037593395 1.10333628 1.06106841 1.036172659 1.169891927 1.036560008 0.979563019 0.891517549 0.952285853 1 13.82161009 -6.751111374 2.9849855 0.941733126 1.080490954 0.640954575 0.044280445 0.14910528 2.730786635 0.019110695 0.013146834 1.77E-07 6.751111374 0.138757827 S(ph)IDQDYER ddPTM_HeLa_A485_30min_R1 4 SIDQDYER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER ;;; 150.46 0.00023085 5184860000 2169790 2220950 2117340 2151150 2887100 2266280 2750160 2885240 2273970 2771010 TRUE FALSE FALSE 2652452.3 2480670.783 2900632.176 2268661.878 2599650.187 2384938.916 2162565.849 2177630.366 2730334.921 2080248.204 1.2750653 1.192487886 1.394368312 1.090572689 1.249682698 1.146468442 1.039571069 1.046812761 1.3125044 1 20.98832424 -5.8794084 1.091871319 1.105802282 1.268370876 0.288517056 0.105442103 0.665919657 1.695742217 0.047171351 0.062411134 1.32E-06 5.8794084 0.162568594 S(ph)IDQDYER ddPTM_HeLa_A486_30min_R1 4 SIDQDYER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER;S(1)IDQDYER ;;; 135.16 0.00048874 3521230000 4173330 4670760 3578620 1310400 5219880 4277140 4709030 4307280 4158270 4365950 TRUE FALSE FALSE 3880801.118 4300631.967 4964357.503 3050677.424 4565153.977 3749469.954 3530780.887 3326606.371 4518712.192 3272687.702 1.185814679 1.314097879 1.516905356 0.932162706 1.394925026 1.145685227 1.07886276 1.016475348 1.380734308 1 21.64204451 -5.836372176 0.918562658 1.123483951 1.305854615 0.12876326 0.173931825 1.210572893 2.220559455 0.086805347 0.127575657 1.46E-06 5.836372176 0.182370664 S(ph)IDRGLER ddPTM_HeLa_A485_30min_R1 5 SIDRGLER 8 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 S(1)IDRGLER;S(1)IDRGLER;S(1)IDRGLER;S(1)IDRGLER;S(1)IDRGLER ;;;; 152.67 9.07E-05 2631780000 465730 1153492 884176 291035.4 1462575 1348583 1575165 2984972 827773 557492 TRUE FALSE FALSE 569330.0318 1288382.855 1211269.496 306933.927 1316955.898 1419192.721 1238618.13 2252902.937 993899.4483 418519.5043 1.360342889 3.07842966 2.894176935 0.733380222 3.14670137 3.390983469 2.959523074 5.383029736 2.374798398 1 18.67493533 -5.965833489 24.99956635 3.289181268 2.128229098 0.127354712 1.208490643 321.4824258 235226.7322 0.363216853 0.41184744 1.08E-06 5.965833489 -1.16095217 S(ph)IDRGLER ddPTM_HeLa_A486_30min_R1 3 SIDRGLER 8 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 S(1)IDRGLER;S(1)IDRGLER;S(1)IDRGLER ;; 145.23 0.00016228 1081930000 487660 366470 466630 187067 888090 376950 544230 672670 280840 451930 TRUE FALSE FALSE 453477.5523 337429.5825 647321.6328 435501.4298 776697.4711 330445.7415 408057.8977 519517.7253 305183.4373 338763.7864 1.338624642 0.996061551 1.910834802 1.285560757 2.292740553 0.975445885 1.204549937 1.533569248 0.900873852 1 18.36992013 -7.478944726 0.915464756 0.979244906 1.490272277 0.172912547 0.391359534 1.051462382 1.656154175 0.362316051 0.140005124 3.32E-08 7.478944726 0.511027372 S(ph)IEDLHR ddPTM_HeLa_A485_30min_R1 5 SIEDLHR 7 0 Q96PY5;Q96PY5-3 Q96PY5 FMNL2 Formin-like protein 2 1 0 S(1)IEDLHR;S(1)IEDLHR;S(1)IEDLHR;S(1)IEDLHR;S(1)IEDLHR ;;;; 172.23 0.00026286 3320100000 1832662 1846378 1481134 1939123 1672483 1946104 2462943 2421667 1611154 3199084 TRUE FALSE FALSE 2240331.339 2062295.846 2029067.102 2045052.379 1505964.72 2047998.996 1936715.108 1827749.371 1934497.829 2401611.234 0.932845128 0.858713441 0.84487742 0.851533483 0.627064322 0.852760417 0.806423238 0.761051308 0.805499992 1 21.1955712 -4.510805726 1.287618891 0.800298962 0.951528545 0.125253568 0.087951703 1.588296539 3.209503224 0.025740529 0.282979062 3.08E-05 4.510805726 0.151229583 S(ph)IEDLHR ddPTM_HeLa_A486_30min_R1 4 SIEDLHR 7 0 Q96PY5;Q96PY5-3 Q96PY5 FMNL2 Formin-like protein 2 1 0 S(1)IEDLHR;S(1)IEDLHR;S(1)IEDLHR;S(1)IEDLHR ;;; 172.25 0.00035015 3406170000 1890530 2074650 1583050 707157 2539530 2143210 2199520 2196270 2058750 2779150 TRUE FALSE FALSE 1758013.61 1910247.178 2196049.356 1646297.234 2220998.467 1878802.541 1649176.832 1696227.265 2237204.108 2083232.751 0.843887275 0.916962916 1.054154585 0.790260826 1.066130737 0.901868761 0.7916431 0.814228398 1.07390982 1 20.9903926 -6.491031378 24.99102617 0.896220233 0.937178331 0 0.110005305 3010.970739 2362750.141 0.038156843 0.033618329 3.23E-07 6.491031378 0.040958098 S(ph)IEDLQPPSALSAPFTNSLAR ddPTM_HeLa_A485_30min_R1 1 SIEDLQPPSALSAPFTNSLAR 21 0 F8W1F5;Q8IVF7-3;Q8IVF7 F8W1F5 FMNL3 Formin-like protein 3 1 0 S(1)IEDLQPPSALSAPFTNSLAR 100.92 3.10E-06 0 25306 34920 23820 31920 39709 28846 43784 41409 26153 43826 TRUE FALSE FALSE 30935.2324 39003.59024 32632.00923 33663.70877 35755.43253 30356.33196 34429.19072 31253.37782 31401.66721 32900.98476 0.940252476 1.185483976 0.991824697 1.023182407 1.086758734 0.922657245 1.046448639 0.949922261 0.954429402 1 15.00584315 -6.253851089 24.98167496 0.976046471 1.049055441 0.215575229 0.067340599 901.2606765 2967076.182 0.02135772 0.02094923 5.57E-07 6.253851089 0.07300897 S(ph)IEDLQPPSALSAPFTNSLAR ddPTM_HeLa_A486_30min_R1 1 SIEDLQPPSALSAPFTNSLAR 21 0 F8W1F5;Q8IVF7-3;Q8IVF7 F8W1F5 FMNL3 Formin-like protein 3 1 0 S(1)IEDLQPPSALSAPFTNSLAR 114.4 5.87E-08 0 29674 30486 23432 10278 35639 26685 29691 28660 27137 40684 TRUE FALSE FALSE 27594.00584 28070.17833 32505.49793 23927.70342 31168.8243 23392.87601 22261.99776 22134.74364 29489.25701 30496.46159 0.904826475 0.920440499 1.065877687 0.784605891 1.022047237 0.767068532 0.729986254 0.725813504 0.966973067 1 14.89635424 -6.272692588 24.77671802 0.814082739 0.936906527 0.156616955 0.111082378 1003.039336 2208432.528 0.037783226 0.033624467 5.34E-07 6.272692588 0.122823788 S(ph)IELEHFEER ddPTM_HeLa_A486_30min_R1 1 SIELEHFEER 10 0 Q8N568-2;Q8N568;G5E9L9;Q8N568-3;A0A0U1RR70 Q8N568-2 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 S(1)IELEHFEER 187.44 1.13E-14 0 19028 20082 19958 8749.3 20785 20201 22643 22405 20180 22843 TRUE FALSE FALSE 17694.23546 18490.62918 27686.27209 20368.81257 18177.95149 17708.80601 16977.48191 17303.8706 21929.21865 17122.96412 1.033362877 1.079873149 1.616908843 1.189561131 1.061612427 1.034213813 0.991503678 1.010565138 1.280690568 1 14.06364484 -5.675395788 4.736800728 1.058602753 1.252529305 0.198833172 0.164894952 0.337394723 13.33754823 0.051654267 0.066695635 2.11E-06 5.675395788 0.193926552 S(ph)IEVENDFLPVEK ddPTM_HeLa_A485_30min_R1 6 SIEVENDFLPVEK 13 0 Q5JPT2;Q96B97-2;Q96B97;Q5JPT1;Q5VSN0 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK ;;;;; 297.56 1.07E-57 1422169000 1822254 1689229 1200481 2185717 2217184 1837879 2787039 2789644 1612868 2865920 TRUE FALSE FALSE 2227608.116 1886769.637 1644588.878 2305117.185 1996433.376 1934107.503 2191565.35 2105479.435 1936555.813 2151498.887 1.035374979 0.876955897 0.764392158 1.071400594 0.927926753 0.89895817 1.018622581 0.978610515 0.900096126 1 21.03691066 -5.271758789 24.99060037 0.967123419 0.890712493 0.170666084 0.07904908 1272.982823 3082791.365 0.022354382 0.033579353 5.35E-06 5.271758789 -0.076410926 S(ph)IEVENDFLPVEK ddPTM_HeLa_A486_30min_R1 5 SIEVENDFLPVEK 13 0 Q5JPT2;Q96B97-2;Q96B97;Q5JPT1;Q5VSN0 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK ;;;; 275.25 1.52E-48 1459718000 1959380 1922130 1025140 849157 1807590 1999140 2428580 2366350 1381490 2272130 TRUE FALSE FALSE 1822037.58 1769813.419 1422101.662 1976880.41 1580865.207 1752506.433 1820923.597 1827583.762 1501238.666 1703173.859 1.069789541 1.039126692 0.834971518 1.160703823 0.928187806 1.028965084 1.069135478 1.073045921 0.881435948 1 20.69979428 -4.53114438 24.99977579 1.002115782 1.062123929 0.061624973 0.091336295 495.7663771 1499471.892 0.022315959 0.059286976 2.94E-05 4.53114438 0.060008147 S(ph)IFEMYEPSELESSHLTDQDNEIR ddPTM_HeLa_A486_30min_R1 2 SIFEMYEPSELESSHLTDQDNEIR 24 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 S(1)IFEMYEPSELESSHLTDQDNEIR;S(0.993)IFEMY(0.007)EPS(0.001)ELESSHLTDQDNEIR ; 204.92 8.79E-29 66865000 31178 38307 32065 7967.1 42193 34808 36010 37380 34277 29862 TRUE FALSE FALSE 28992.5832 35271.41381 44481.42673 18547.81143 36900.76051 30513.74286 26999.91713 28869.39 37248.15796 22384.36083 1.29521604 1.575716817 1.987165373 0.82860581 1.648506329 1.363172399 1.206195581 1.289712501 1.66402598 1 14.4502035 -12.88064504 0.172385179 2.74E-15 1.526631441 0.141989588 0.300672743 173.3707762 2.333649227 63.15400407 1.085825289 1.32E-13 12.88064504 1.526631441 S(ph)IGAS(ph)PNPFSVHTATAVPSGK ddPTM_HeLa_A485_30min_R1 2 SIGASPNPFSVHTATAVPSGK 21 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 2 0 S(1)IGAS(0.998)PNPFS(0.002)VHTATAVPSGK;S(0.986)IGAS(0.937)PNPFS(0.075)VHT(0.002)ATAVPSGK ; 120.13 1.92E-05 252576000 152879 197460 172898 99405 268470 183278 211169 250610 176580 196533 TRUE FALSE FALSE 186886.4061 220551.2293 236860.1651 104835.2434 241740.1841 192874.1527 166051.0181 189147.5046 212017.9863 147540.94 1.266674905 1.494847663 1.605386038 0.710550193 1.638461732 1.307258532 1.125457233 1.282000132 1.437011221 1 17.17075581 -13.04039685 0.23443882 2.80E-11 1.351938576 0.11821289 0.254096478 229.740547 3.460985563 110.6838247 0.426027047 9.11E-14 13.04039685 1.351938576 S(ph)IGASPNPFSVHTATAVPSGK ddPTM_HeLa_A485_30min_R1 2 SIGASPNPFSVHTATAVPSGK 21 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 S(1)IGASPNPFSVHTATAVPSGK;S(0.997)IGAS(0.002)PNPFSVHTATAVPSGK ; 226.03 6.64E-36 1802580000 683820 1104180 971090 448460 1416980 918280 1228310 1352440 997290 894100 TRUE FALSE FALSE 835933.3998 1233304.246 1330336.601 472958.2342 1275900.496 966359.7209 965871.5341 1020751.969 1197436.955 671217.3247 1.245399022 1.837414203 1.98197596 0.704627573 1.900875393 1.439712125 1.43898481 1.520747352 1.783978022 1 19.35642043 -10.10712763 4.491170785 0.999951303 1.540749435 0.169898748 0.357608442 232920599 11.49679197 127272.3461 0.083286728 7.81E-11 10.10712763 0.540798132 S(ph)IGASPNPFSVHTATAVPSGK ddPTM_HeLa_A486_30min_R1 1 SIGASPNPFSVHTATAVPSGK 21 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 S(0.998)IGAS(0.002)PNPFSVHTATAVPSGK 180.26 3.32E-19 593010000 362850 382310 276840 23078 420830 316240 355110 332960 322860 208050 TRUE FALSE FALSE 337416.0888 352014.3633 384039.862 53726.7503 368045.5773 277225.5241 266257.722 257152.2765 350845.7648 155952.9258 2.163576521 2.257183451 2.462537077 0.344506203 2.359978663 1.777623104 1.707295459 1.6489096 2.249690174 1 17.25075109 -11.00943548 3.025265987 0.074287451 1.866821597 0.171993577 0.58167429 245808364.9 221597518.2 1580755075 0.142793645 9.79E-12 11.00943548 1.792534146 S(ph)IGS(ph)DSQGR ddPTM_HeLa_A485_30min_R1 1 SIGSDSQGR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 S(1)IGS(0.996)DS(0.004)QGR 87.573 0.0082538 229150000 245920 348130 307460 341210 449700 347780 429670 483100 320430 439420 TRUE FALSE FALSE 300624.0556 388840.7752 421202.2485 359849.4383 404926.289 365989.223 337867.4944 364618.9675 384737.3618 329880.6809 0.911311492 1.178731577 1.276832118 1.090847264 1.227493189 1.109459402 1.024211219 1.105305611 1.166292493 1 18.33158477 -6.518388635 24.82662877 1.08045744 1.146950524 0.075202342 0.100330374 483.6046549 2673970.146 0.037684927 0.029997386 3.03E-07 6.518388635 0.066493085 S(ph)IGS(ph)DSQGR ddPTM_HeLa_A486_30min_R1 2 SIGSDSQGR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 S(1)IGS(0.915)DS(0.085)QGR;S(1)IGS(0.968)DS(0.032)QGR ; 90.156 0.007374 471390000 844140 875530 699690 339250 1011050 937430 964590 986540 762860 1002350 TRUE FALSE FALSE 784970.1451 806149.8142 970628.7063 789791.1447 884234.6813 821779.4177 723239.3796 761926.378 828985.319 751355.0358 1.044739315 1.072927945 1.291837627 1.051155721 1.176853337 1.093729833 0.962580066 1.014069703 1.103320374 1 19.51913526 -6.563152129 7.607539147 1.021664548 1.129981601 0.316204513 0.074713925 0.272543514 42.73536648 0.028566424 0.02217516 2.73E-07 6.563152129 0.108317054 S(ph)IGSAVDQGNESIVAK ddPTM_HeLa_A485_30min_R1 3 SIGSAVDQGNESIVAK 16 0 Q9H0H5;F8VRD2;F8W1E5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 S(1)IGSAVDQGNESIVAK;S(1)IGSAVDQGNESIVAK;S(1)IGSAVDQGNESIVAK ;; 399.6 9.96E-136 1724300000 1119540 1079310 893882 1352970 1396050 1303950 1640660 1805370 1033190 1878250 TRUE FALSE FALSE 1368577.811 1205525.916 1224566.149 1426879.325 1257054.36 1372222.806 1290119.588 1362600.177 1240541.756 1410036.842 0.9705972 0.85496058 0.868463939 1.011944712 0.891504621 0.973182236 0.914954525 0.966357854 0.87979386 1 20.42730143 -5.218517053 24.99803959 0.944133946 0.893702576 0.170914787 0.049868503 805.2676115 468988.2485 0.012655766 0.02192023 6.05E-06 5.218517053 -0.05043137 S(ph)IGSAVDQGNESIVAK ddPTM_HeLa_A486_30min_R1 4 SIGSAVDQGNESIVAK 16 0 Q9H0H5;F8VRD2;F8W1E5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 S(0.932)IGS(0.068)AVDQGNESIVAK;S(0.999)IGS(0.001)AVDQGNESIVAK;S(1)IGSAVDQGNESIVAK;S(1)IGSAVDQGNESIVAK ;;; 377.88 3.36E-119 1522892000 1717277 1757967 1033225 683182 1660582 1735131 2101349 1996286 1497322 2139357 TRUE FALSE FALSE 1596904.75 1618659.293 1433317.391 1590482.222 1452296.321 1521068.179 1575569.254 1541775.256 1627111.077 1603648.082 0.995795005 1.009360664 0.893785492 0.991790056 0.90562034 0.948504972 0.982490655 0.961417454 1.014631012 1 20.61292615 -7.754653961 24.06046672 1.007315513 0.959928193 0.20998943 0.035802488 137.0721322 486067.1839 0.025446991 0.009109855 1.76E-08 7.754653961 -0.047387319 S(ph)IGSDSQGR ddPTM_HeLa_A485_30min_R1 2 SIGSDSQGR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 S(0.914)IGS(0.086)DSQGR;S(0.96)IGS(0.04)DSQGR ; 187.85 3.38E-11 487480000 544420 799640 708630 593700 840640 693330 748340 927210 715810 801780 TRUE FALSE FALSE 665524.3508 893150.9421 970781.7256 626132.3277 756942.9299 729631.6867 588451.0456 699810.2937 859466.5012 601911.0017 1.105685639 1.483858809 1.612832666 1.04024071 1.257566198 1.212191976 0.977637963 1.162647454 1.427896315 1 19.19919066 -5.273610162 24.99651536 1.160191062 1.409099027 0.300627312 0.172159577 908.1190819 1865105.269 0.048593921 0.07267681 5.33E-06 5.273610162 0.248907966 S(ph)IGSDSQGR ddPTM_HeLa_A486_30min_R1 2 SIGSDSQGR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 S(0.773)IGS(0.227)DSQGR;S(0.866)IGS(0.134)DSQGR ; 173.28 3.98E-06 1169750000 1053880 1094420 952910 353100 1252930 1075140 1122910 1133750 992710 1136750 TRUE FALSE FALSE 980008.4542 1007694.173 1321902.272 822034.6447 1095775.836 942500.158 841946.0411 875619.8746 1078758.902 852100.401 1.150109134 1.182600281 1.551345675 0.964715712 1.285970333 1.106090499 0.988083141 1.027601763 1.265999759 1 19.7006639 -5.960201572 1.251891016 1.074444561 1.254877065 0.176531518 0.15559317 0.778844293 2.554835565 0.067265337 0.079553635 1.10E-06 5.960201572 0.180432504 S(ph)IHAEIAFR ddPTM_HeLa_A486_30min_R1 1 SIHAEIAFR 9 0 A0A2R8Y4H4 A0A2R8Y4H4 1 0 S(1)IHAEIAFR 71.501 0.0058319 0 46222 52471 58940 25638 71005 51365 53138 49599 44627 44861 TRUE FALSE FALSE 42982.07649 48313.00686 81763.14647 59686.55967 62098.8908 45028.10854 39842.31036 38306.39044 48495.30429 33627.5136 1.278181819 1.436710648 2.431435979 1.774932288 1.846669116 1.339025807 1.184812854 1.139138352 1.442131728 1 15.03735449 -6.37446804 3.862040619 1.209044936 1.774818728 0.443145688 0.300699057 0.245400367 6.48308192 0.117280489 0.102223177 4.22E-07 6.37446804 0.565773792 S(ph)IHEVDISNLEAALR ddPTM_HeLa_A485_30min_R1 8 SIHEVDISNLEAALR 15 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(0.999)IHEVDIS(0.001)NLEAALR ;;;;;;; 337.44 9.79E-91 961556000 449074 520427 575370 411408 641861 493681 517261 530634 567628 573738 TRUE FALSE FALSE 548968.962 581286.4105 788223.3061 433882.1773 577955.0651 519529.3738 406743.9617 400495.1795 681545.733 430715.6755 1.274550692 1.349582668 1.830031622 1.007351722 1.341848226 1.206200293 0.944344459 0.929836554 1.582356464 1 18.7163763 -5.290176019 24.99954807 1.144085108 1.471207954 0.30885171 0.23292209 868.336676 755410.9 0.06545517 0.097105777 5.13E-06 5.290176019 0.327122846 S(ph)IHEVDISNLEAALR ddPTM_HeLa_A486_30min_R1 6 SIHEVDISNLEAALR 15 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR ;;;;; 336.39 1.12E-90 797589000 523019 654548 548219 212356.1 637646 544810 621156 658319 569973 581189 TRUE FALSE FALSE 486358.069 602679.2327 760504.0786 494375.7327 557666.4929 477596.8814 465736.1989 508434.1347 619378.7186 435655.4915 1.116382276 1.383384909 1.745654751 1.134785954 1.28006304 1.096271918 1.069047006 1.167055494 1.421716771 1 18.7328282 S(ph)IKS(ph)DVPVYLK ddPTM_HeLa_A485_30min_R1 2 SIKSDVPVYLK 11 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 2 0 S(1)IKS(1)DVPVYLK;S(1)IKS(1)DVPVYLK ; 73.834 0.012253 103833000 421200 224070 137774 789390 282880 276530 477950 289980 225770 1037990 TRUE FALSE FALSE 514894.4869 250273.0374 188742.3359 832512.3769 254715.4739 291008.6832 375832.078 218861.9503 271079.9681 779238.1958 0.660766489 0.321176553 0.242213917 1.068367004 0.326877552 0.373452796 0.482307053 0.280866559 0.347878184 1 19.57170487 -10.29764752 5.128157864 1.000136803 0.453146463 0.327246599 0.23396966 0.000365021 5.00E-05 0.225966372 0.054791334 5.04E-11 10.29764752 -0.54699034 S(ph)IKYDSLLEQGLVEAALVSK ddPTM_HeLa_A485_30min_R1 2 SIKYDSLLEQGLVEAALVSK 20 1 O96028;O96028-5;O96028-3;O96028-6;D6RIS1;D6R9V2;O96028-7 O96028 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 S(0.622)IKY(0.214)DS(0.165)LLEQGLVEAALVSK;S(0.94)IKY(0.007)DS(0.053)LLEQGLVEAALVSK ; 155.22 3.30E-10 85746000 122853 80338 57784 192082 119266 103601 160807 140950 73529 255870 TRUE FALSE FALSE 150181.226 89732.83025 79160.70619 202574.9533 107391.4583 109025.3882 126449.2708 106381.7915 88285.59585 192086.3179 0.781842391 0.467148474 0.412110071 1.054603761 0.559079165 0.567585393 0.658294001 0.553822847 0.459614182 1 17.55139524 -10.53272996 2.863598999 1.017783585 0.612204251 0.297246663 0.178662473 65168959.12 70056220.33 8991998.538 0.045015679 2.93E-11 10.53272996 -0.405579334 S(ph)ILGLGQARPLEFLR ddPTM_HeLa_A485_30min_R1 2 SILGLGQARPLEFLR 15 1 Q4VC44-2;Q4VC44;I3L188;Q4VC44-3 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 S(1)ILGLGQARPLEFLR;S(1)ILGLGQARPLEFLR ; 69.737 0.0019796 53025000 21429.7 23907 19179.6 23358 25892 29801 30458 37662 22116.9 32920 TRUE FALSE FALSE 26196.66283 26702.71569 26274.93217 24633.98839 23314.10157 31361.33428 23950.39948 28425.33545 26555.55896 24713.64985 1.06000785 1.080484504 1.063174899 0.996776621 0.943369422 1.268988372 0.969116243 1.150187675 1.074530032 1 14.59302047 S(ph)ILGLGQARPLEFLR ddPTM_HeLa_A486_30min_R1 2 SILGLGQARPLEFLR 15 1 Q4VC44-2;Q4VC44;I3L188;Q4VC44-3 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 S(1)ILGLGQARPLEFLR;S(1)ILGLGQARPLEFLR ; 141.97 4.84E-08 70370000 28473 26466 26117.7 16613.9 39607 30495 35804 38412 27695 38282 TRUE FALSE FALSE 26477.18973 24368.73777 36231.1729 38677.99882 34639.12074 26732.83695 26845.4605 29666.42613 30095.6249 28695.93803 0.922680754 0.84920513 1.262588902 1.347856229 1.20710885 0.931589583 0.935514304 1.033819703 1.048776481 1 14.80855891 -6.268329857 24.81875145 0.98865214 1.123776103 0.16639973 0.14286966 1050.662763 3784360.109 0.057172169 0.05156248 5.39E-07 6.268329857 0.135123963 S(ph)INYSK ddPTM_HeLa_A486_30min_R1 2 SINYSK 6 0 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5 A0A087WSW7 HELLS Lymphoid-specific helicase 1 0 S(1)INYSK;S(1)INYSK ; 101.9 0.01143 436410000 814320 851050 557680 303760 898390 885610 920620 930020 707470 978460 TRUE FALSE FALSE 757240.3732 783609.6985 773628.6312 707168.6312 785705.549 776352.4424 690271.1387 718274.7482 768794.0692 733447.2473 1.032440132 1.068392719 1.054784286 0.964171089 1.071250253 1.058497997 0.941132633 0.979313442 1.048192726 1 19.48433368 -6.735638449 24.99972008 0.99043577 1.041236723 0.293012235 0.037574054 290.2414163 281228.1171 0.014720499 0.011398662 1.84E-07 6.735638449 0.050800953 S(ph)IPQLDLGWPDTIAYR ddPTM_HeLa_A485_30min_R1 4 SIPQLDLGWPDTIAYR 16 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 0 S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR ;;; 224.86 6.18E-34 1057860000 187892 221144 213071 180643 258722 223528 282596 297601 202911 243781 TRUE FALSE FALSE 229687.9272 247004.8671 291894.8295 190511.0697 232962.7293 235231.5804 222217.056 224613.8881 243633.3765 183010.8832 1.255050646 1.349673106 1.59495886 1.040982189 1.272944675 1.285342032 1.214228641 1.227325306 1.331250756 1 17.48156992 -14 0.145966432 0.021798347 1.37700816 0.307198511 0.130230077 172.7954607 1.515416267 49.298718 0.723829946 1.00E-14 14 1.355209813 S(ph)IPQLDLGWPDTIAYR ddPTM_HeLa_A486_30min_R1 3 SIPQLDLGWPDTIAYR 16 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 0 S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR;S(1)IPQLDLGWPDTIAYR ;; 274.43 1.79E-58 782350000 262541 269835 243874 95367 334746 268684 308808 303521 248907 286829 TRUE FALSE FALSE 244138.2317 248452.2919 338308.544 222019.1956 292759.0353 235536.4999 231540.9722 234415.8941 270482.4592 215005.1515 1.135499452 1.155564368 1.57349041 1.032622679 1.361637306 1.095492356 1.076908951 1.090280361 1.258027807 1 17.7140117 -6.290671521 24.24836231 1.108082326 1.252117795 0.196829334 0.148992629 860.67479 713935.1621 0.051209793 0.045171134 5.12E-07 6.290671521 0.14403547 S(ph)IQDLTVTGTEPGQVSSR ddPTM_HeLa_A485_30min_R1 4 SIQDLTVTGTEPGQVSSR 18 0 O43318-3;O43318;Q9UG54;O43318-4;O43318-2 O43318-3 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 0 S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR ;;; 216.16 2.92E-34 1696530000 651092 697149 748713 758468 992941 723474 905130 910130 728441 1059160 TRUE FALSE FALSE 795925.1692 778674.5112 1025693.095 799901.1863 894080.3076 761353.9799 711741.5813 686919.1905 874632.427 795130.9044 1.000998911 0.979303542 1.289967588 1.005999367 1.124444167 0.957520297 0.895125038 0.863907046 1.099985452 1 19.60083287 -6.278435201 20.15479347 0.95054012 1.082078359 0.243659508 0.101657455 89.24630234 105832.053 0.03573521 0.03167972 5.27E-07 6.278435201 0.131538238 S(ph)IQDLTVTGTEPGQVSSR ddPTM_HeLa_A486_30min_R1 5 SIQDLTVTGTEPGQVSSR 18 0 O43318-3;O43318;Q9UG54;O43318-4;O43318-2 O43318-3 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 0 S(1)IQDLTVTGTEPGQVSSR;S(0.993)IQDLT(0.007)VTGTEPGQVSSR;S(0.999)IQDLT(0.001)VTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR ;;;; 275.68 4.52E-69 1875268000 676722 727703 554649 293694 839569 711055 827648 799223 632436 788055 TRUE FALSE FALSE 629287.2824 670037.164 769423.9468 683734.4745 734262.4273 623332.2636 620561.7164 617257.3698 687256.0617 590720.8986 1.06528698 1.134270288 1.302516888 1.157457737 1.242993822 1.055206046 1.050515934 1.044922181 1.163419245 1 19.17211713 -6.277243283 24.66524727 1.06485176 1.183434559 0.411681196 0.070282093 721.3161698 1125758.712 0.025120431 0.022228184 5.28E-07 6.277243283 0.118582799 S(ph)IQFVDWCPTGFK ddPTM_HeLa_A485_30min_R1 2 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 S(1)IQFVDWCPTGFK;S(1)IQFVDWCPTGFK ; 213.94 1.91E-22 1104860000 656810 624990 541890 807200 927230 714680 1047570 1055090 694210 1047680 TRUE FALSE FALSE 802915.1185 698077.1438 742357.6609 851295.2921 834911.7255 752099.5397 823748.1116 796327.5232 833531.5793 786512.6571 1.020854669 0.887559962 0.943859777 1.082366933 1.061536287 0.956245946 1.047342473 1.012478968 1.05978152 1 19.58511046 -5.23724632 24.45143559 1.030702501 0.944438291 0.396027789 0.045426728 562.2739117 568277.5045 0.01210358 0.020947928 5.79E-06 5.23724632 -0.086264209 S(ph)IQFVDWCPTGFK ddPTM_HeLa_A486_30min_R1 2 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 S(1)IQFVDWCPTGFK;S(1)IQFVDWCPTGFK ; 270.26 1.52E-42 670240000 1173160 1351070 882010 562450 1386100 1404950 1575040 1556950 1106810 1488970 TRUE FALSE FALSE 1090927.542 1244006.293 1223547.893 1309412.025 1212242.413 1231621.553 1180948.333 1202466.473 1202749.182 1116122.22 0.977426596 1.114578914 1.096249022 1.173179783 1.086119773 1.103482693 1.058081554 1.07736093 1.077614225 1 20.09006359 -8.652078969 0.667869638 0.997966391 1.093671782 0.231874892 0.04638988 3.320686115 2.226113698 0.064440869 0.018069262 2.23E-09 8.652078969 0.095705391 S(ph)IRTPPR ddPTM_HeLa_A485_30min_R1 1 SIRTPPR 7 1 Q5VT98;Q5VXH4;Q5TYX0 Q5VT98 PRAMEF20;PRAMEF6;PRAMEF5 PRAME family member 20/21;PRAME family member 6;PRAME family member 5 1 0 S(0.923)IRT(0.077)PPR 57.96 0.019905 18341000000 32117 51045 54060 13370 53772 40175 39433 45975 53536 26042 TRUE FALSE FALSE 39261.31585 57014.26872 74059.04362 14100.36925 48418.27088 42278.50088 31007.81741 34699.55916 64280.18414 19550.20867 2.008230015 2.916299753 3.788145942 0.721238811 2.476611462 2.162560083 1.586060688 1.774894568 3.287953864 1 14.25489639 -5.250000027 24.99800031 1.917836851 2.905432564 0.266957074 0.789834995 1064.453275 2326106.958 0.209643571 0.359043897 5.62E-06 5.250000027 0.987595712 S(ph)IS(ph)AAGRSQASPPKQAK ddPTM_HeLa_A485_30min_R1 1 SISAAGRSQASPPKQAK 17 2 Q5VTL7 Q5VTL7 FNDC7 Fibronectin type III domain-containing protein 7 2 0 S(0.5)IS(0.5)AAGRS(0.5)QAS(0.5)PPKQAK 63.037 0.012106 1140800000 498630 1348000 1390000 121270 1470500 1154800 836330 1298800 1171600 199170 TRUE FALSE FALSE 609548.5232 1505636.874 1904218.843 127894.673 1324091.857 1215263.542 657641.2633 980267.2636 1406729.373 149520.5845 4.076686334 10.06976317 12.73549625 0.855364989 8.855582404 8.127734029 4.398332616 6.556068966 9.408265615 1 17.18998459 -5.24265841 24.97662353 6.022572884 9.071559075 0.159558521 3.437138858 1645.432685 2188241.541 0.910949101 1.574349378 5.72E-06 5.24265841 3.048986191 S(ph)IS(ph)RPRS(ph)S(ph)R ddPTM_HeLa_A485_30min_R1 3 SISRPRSSR 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 4 0 S(1)IS(1)RPRS(1)S(1)R;S(1)IS(1)RPRS(1)S(1)R;S(1)IS(1)RPRS(1)S(1)R ;; 92.269 0.0012465 5035700000 4306800 5920600 3922500 4035100 3509600 4464700 4800500 4418900 3567900 4349800 TRUE FALSE FALSE 5264832.802 6612962.668 5373595.979 4255527.296 3160171.901 4698464.788 3774833.959 3335157.846 4283944.803 3265474.912 1.612271704 2.025115135 1.645578706 1.30318787 0.96775262 1.438830466 1.155983145 1.021339296 1.311890282 1 21.63886139 -5.237830815 2.844266054 1.164147003 1.820112758 0.731284588 0.166987554 0.128109963 2.073537315 0.046240198 0.083967874 5.78E-06 5.237830815 0.655965754 S(ph)IS(ph)RPRS(ph)S(ph)R ddPTM_HeLa_A486_30min_R1 4 SISRPRSSR 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 4 0 S(1)IS(1)RPRS(1)S(1)R;S(1)IS(1)RPRS(1)S(1)R;S(1)IS(1)RPRS(1)S(1)R;S(1)IS(1)RPRS(1)S(1)R ;;; 97.45 0.000916 5931270000 9849400 9295500 4594210 2442790 4385660 6944300 6173380 5249520 6623150 11161500 TRUE FALSE FALSE 9159007.922 8558890.726 6373211.149 5686938.572 3835569.628 6087582.87 4628735.029 4054318.892 7197249.975 8366587.751 1.094712468 1.022984636 0.761745569 0.679720185 0.458438941 0.727606409 0.553240481 0.484584518 0.860237195 1 22.99620792 -4.809388832 2.215347324 0.647020756 1.096316462 0.466702378 0.157592205 0.242686588 2.319365211 0.041860433 0.138169632 1.55E-05 4.809388832 0.449295706 S(ph)ISCGPSSR ddPTM_HeLa_A485_30min_R1 1 SISCGPSSR 9 0 Q5VU43-13;Q5VU43-2 Q5VU43-13 1 0 S(0.809)IS(0.191)CGPSSR 115.39 0.00068346 280220000 103960 117400 151670 128290 218890 141950 184560 218870 146370 173150 TRUE FALSE FALSE 127085.5433 131128.9088 207779.0445 135298.1579 197096.543 149382.2825 145127.2483 165191.7893 175745.1164 129986.8916 0.977679686 1.008785633 1.598461522 1.040860014 1.516280147 1.14921036 1.116476027 1.270834215 1.352021841 1 16.98800662 -4.564233797 24.99997613 1.261111489 0.985453464 0.246237273 0.183702734 156.9117686 94855.80828 0.043549996 0.115222695 2.73E-05 4.564233797 -0.275658025 S(ph)ISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE ddPTM_HeLa_A485_30min_R1 1 SISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE 35 1 P49902-2;P49902 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 1 0 S(0.5)IS(0.5)EIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE 97.718 6.03E-05 183320000 4586 4040.2 5681 5784.4 6129.7 7045.6 8189.5 7434.9 4530.6 6525.6 TRUE FALSE FALSE 5606.139878 4512.666245 7782.638306 6100.387125 5519.405545 7414.496721 6439.746423 5611.479118 5439.849863 4898.888015 1.144369878 0.921161339 1.588654054 1.245259558 1.126664976 1.513506065 1.314532278 1.145459766 1.110425437 1 12.2582386 -7.71099375 2.033839702 1.020580415 1.265570142 0.183717205 0.180813102 0.566654123 4.387135569 0.17239594 0.050929875 1.95E-08 7.71099375 0.244989727 S(ph)ISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE ddPTM_HeLa_A486_30min_R1 2 SISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE 35 1 P49902-2;P49902 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 1 0 S(0.498)IS(0.498)EIKPPNLFPLAPQEIT(0.005)HCHDEDDDEEEEEEEE;S(0.5)IS(0.5)EIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE ; 67.828 0.00055728 253876000 27150 28612 16158.3 16305.6 26902.9 32074 36660 36740 19971.9 32739 TRUE FALSE FALSE 25246.9252 26344.68092 22415.22649 37960.26084 23528.48742 28117.03598 27487.28025 28375.10403 21703.08037 24540.9413 1.028767597 1.073499202 0.913380877 1.546813562 0.958744293 1.14571954 1.120058107 1.156235357 0.884362181 1 14.58290297 -7.757271704 24.99865046 0.942181065 1.119595716 0.154617311 0.164316367 178.0455907 1068007.47 0.116628576 0.040527428 1.75E-08 7.757271704 0.177414651 S(ph)ISESFLTVK ddPTM_HeLa_A485_30min_R1 2 SISESFLTVK 10 0 J3KSQ9;K7EP00;F5H527;Q76I76-3;Q76I76-4;Q76I76 J3KSQ9 SSH2 Protein phosphatase Slingshot homolog 2 1 0 S(0.868)IS(0.132)ESFLTVK;S(1)ISESFLTVK ; 211.46 2.50E-14 214140000 220860 222340 194528 242380 331060 251160 356340 370720 243710 336140 TRUE FALSE FALSE 269989.545 248340.7289 266492.0022 255620.6057 298098.504 264310.3492 280205.048 279800.3387 292620.3616 252346.4842 1.069916016 0.984125971 1.056055934 1.012974706 1.181306349 1.047410468 1.110398066 1.108794282 1.159597537 1 17.94504646 -5.722740016 24.99987515 1.10445629 1.029242783 0.298601193 0.052763068 184.743681 119343.9609 0.014545043 0.018777263 1.89E-06 5.722740016 -0.075213506 S(ph)ISESFLTVK ddPTM_HeLa_A486_30min_R1 2 SISESFLTVK 10 0 J3KSQ9;K7EP00;F5H527;Q76I76-3;Q76I76-4;Q76I76 J3KSQ9 SSH2 Protein phosphatase Slingshot homolog 2 1 0 S(0.986)IS(0.014)ESFLTVK;S(0.986)IS(0.014)ESFLTVK ; 240.05 6.90E-21 249930000 281290 327130 270940 143213 370740 357200 352780 381550 276650 354400 TRUE FALSE FALSE 261573.0236 301207.0274 375855.224 333407.1016 324238.3322 313132.2957 264510.7127 294679.3942 300630.2447 265655.9332 0.984630836 1.133823829 1.414819611 1.255033522 1.220519821 1.178713729 0.995689083 1.109252071 1.131652665 1 18.01919941 -6.607167203 6.336395696 1.068892636 1.211547561 0.281801666 0.107964935 0.307571661 18.65762538 0.044511714 0.034309818 2.47E-07 6.607167203 0.142654925 S(ph)ISESSR ddPTM_HeLa_A485_30min_R1 7 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 0 S(0.999)IS(0.001)ESSR;S(0.997)IS(0.003)ESSR;S(0.995)IS(0.005)ESSR;S(0.902)IS(0.098)ESSR;S(0.984)IS(0.016)ESSR;S(0.866)IS(0.134)ESSR;S(0.987)IS(0.013)ESSR ;;;;;; 195.32 0.00026715 12574580000 2457220 3217200 3048690 2987170 3636740 3019030 3635120 3741190 3014430 3954730 TRUE FALSE FALSE 3003820.112 3593423.554 4176527.298 3150351.533 3274653.396 3177101.742 2858446.916 2823657.287 3619398.451 2968888.592 1.011765857 1.210359851 1.406764575 1.061121506 1.102989652 1.070131682 0.96280033 0.951082265 1.219108881 1 21.50149153 -5.47959335 24.98816244 1.048475545 1.213743137 0.285531234 0.113927884 582.1769325 336083.7614 0.032540605 0.048261833 3.31E-06 5.47959335 0.165267592 S(ph)ISESSR ddPTM_HeLa_A486_30min_R1 4 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 0 S(0.988)IS(0.012)ESSR;S(0.816)IS(0.18)ES(0.004)SR;S(1)ISESSR;S(0.985)IS(0.015)ESSR ;;; 148.27 0.0010507 5703570000 596970 576603 498229 206646 626469 554069 589770 587850 513911 667550 TRUE FALSE FALSE 555125.4858 530910.8783 691156.6118 481082.3313 547891.4164 485713.6001 442203.308 454009.3877 558457.2193 500391.135 1.109383134 1.060991775 1.381232727 0.961412578 1.094926305 0.970667876 0.883715312 0.907309015 1.116041393 1 18.93269671 -5.357027849 24.99999781 0.98578401 1.171663531 0.422224612 0.103211874 48.69594519 12731.20835 0.029355684 0.04354137 4.40E-06 5.357027849 0.185879521 S(ph)ISGTSTSEKPNSMDTANTSPFK ddPTM_HeLa_A485_30min_R1 1 SISGTSTSEKPNSMDTANTSPFK 23 1 Q9UJF2-2;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.801)IS(0.187)GT(0.01)S(0.001)T(0.001)SEKPNSMDTANTSPFK 79.382 4.21E-05 0 110920 66938 58060 161720 102590 71128 115650 99610 85973 207920 TRUE FALSE FALSE 135593.7713 74765.81682 79538.81008 170554.3541 92375.77938 74852.1521 90940.43273 75180.49132 103226.9925 156089.3705 0.868693178 0.478993647 0.509572239 1.092671164 0.591813389 0.479546761 0.582617717 0.481650295 0.661332621 1 17.25201277 -8.044930786 22.75333374 1.000000003 0.629214796 0.248279557 0.188883137 5247.403503 2657326.517 0.185748452 0.047960044 9.02E-09 8.044930786 -0.370785207 S(ph)ISGTSTSEKPNSMDTANTSPFK ddPTM_HeLa_A486_30min_R1 1 SISGTSTSEKPNSMDTANTSPFK 23 1 Q9UJF2-2;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.929)IS(0.07)GTSTSEKPNSMDTANTSPFK 277.38 3.74E-75 520430000 375220 404820 171190 136200 326540 459330 520970 526270 325360 475040 TRUE FALSE FALSE 348919.0156 372740.5889 237479.3526 317080.4832 285582.3083 402662.5347 390617.7957 406449.8094 353562.4668 356086.892 0.979870429 1.046768632 0.666914054 0.890458173 0.802001744 1.130798532 1.096973251 1.141434348 0.992910648 1 18.4418698 -6.265787693 24.88834368 1.082797376 0.875676662 0.462170289 0.104993106 322.5852371 1846368.43 0.037466099 0.034171483 5.42E-07 6.265787693 -0.207120714 S(ph)ISGTSTSEKPNSMDTANTSPFKVPGFFSK ddPTM_HeLa_A485_30min_R1 1 SISGTSTSEKPNSMDTANTSPFKVPGFFSK 30 2 Q9UJF2-2;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.561)IS(0.415)GT(0.015)S(0.003)T(0.003)S(0.003)EKPNSMDTANTSPFKVPGFFSK 92.846 0.00028213 205690000 25942 32390 19259 25925 33362 50359 58147 100910 30865 39291 TRUE FALSE FALSE 31712.7084 36177.72874 26383.70553 27341.2171 30040.36214 52995.71937 45723.41843 76161.66428 37059.32239 29496.4768 1.075135469 1.226510169 0.894469727 0.926931623 1.018438993 1.796679642 1.550131521 2.582059708 1.256398269 1 14.84825502 -6.258451162 24.14134841 1.730499937 1.026242703 0.356962165 0.398779942 156.0115564 1260396.107 0.128887861 0.123505524 5.52E-07 6.258451162 -0.704257234 S(ph)ISKDSLASNIVNLTPQNQPHPTATK ddPTM_HeLa_A486_30min_R1 1 SISKDSLASNIVNLTPQNQPHPTATK 26 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.5)IS(0.5)KDSLASNIVNLTPQNQPHPTATK 142.9 4.22E-09 417730000 353090 320610 141440 50453 297560 371030 479910 461060 285750 387320 TRUE FALSE FALSE 328340.2144 295203.696 196209.3559 117457.1338 260237.2502 325256.091 359831.442 356086.7029 310519.0401 290332.551 1.130910789 1.016777812 0.675809017 0.404560678 0.896341968 1.120288062 1.239376848 1.226478745 1.069528852 1 18.1473468 -6.20903254 4.062036107 1.15433101 0.797394757 0.385051363 0.193818264 0.244616157 8.489543613 0.073768878 0.072029178 6.18E-07 6.20903254 -0.356936253 S(ph)ISNEGLTLNNSHVSK ddPTM_HeLa_A485_30min_R1 1 SISNEGLTLNNSHVSK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.542)IS(0.458)NEGLTLNNSHVSK 73.294 0.0049365 166160000 174580 317240 248300 74010 268970 332000 201090 344180 280470 98130 TRUE FALSE FALSE 213414.7187 354338.4584 340156.5026 78052.9789 242190.4024 349383.0066 158125.4787 259769.3153 336757.7564 73667.99695 2.896980067 4.809937463 4.617425703 1.059523567 3.287593153 4.742670102 2.14646095 3.526216622 4.57128971 1 16.1687504 S(ph)ISNEGLTLNNSHVSK ddPTM_HeLa_A486_30min_R1 1 SISNEGLTLNNSHVSK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.552)IS(0.448)NEGLTLNNSHVSK 87.654 0.00080222 249230000 101930 138810 186810 28400 219480 95465 83768 113420 137780 71535 TRUE FALSE FALSE 94785.23337 127810.1901 259147.8349 66116.63526 191950.7718 83687.49892 62808.36039 87596.74194 149722.8813 53622.17039 1.767650072 2.383532579 4.832848672 1.233009309 3.579690461 1.560688393 1.171313282 1.633591876 2.792182417 1 15.71054199 -6.289077754 24.21599129 1.642389311 2.768865816 0.234259299 1.019342218 770.9679387 675498.1124 0.353307835 0.311671536 5.14E-07 6.289077754 1.126476505 S(ph)ISPPSGLPQPHGGALR ddPTM_HeLa_A485_30min_R1 1 SISPPSGLPQPHGGALR 17 0 Q9P202;Q9P202-2 Q9P202 DFNB31 Whirlin 1 0 S(0.494)IS(0.494)PPS(0.012)GLPQPHGGALR 69.256 0.006003 248510000 58949 91267 75859 52214 75806 71694 80532 100580 71269 90072 TRUE FALSE FALSE 72062.00168 101939.8817 103922.4009 55066.31861 68258.48847 75447.78698 63325.68031 75912.5973 85572.03458 67618.70805 1.06571101 1.507569202 1.536888294 0.814365139 1.009461589 1.115782735 0.936511243 1.122656724 1.265508275 1 16.04513483 -5.253897557 24.98136027 1.040719557 1.383807471 0.463629579 0.163568067 511.1311855 1693055.024 0.045136857 0.076256009 5.57E-06 5.253897557 0.343087915 S(ph)ISPPSGLPQPHGGALR ddPTM_HeLa_A486_30min_R1 1 SISPPSGLPQPHGGALR 17 0 Q9P202;Q9P202-2 Q9P202 DFNB31 Whirlin 1 0 S(0.615)IS(0.382)PPS(0.003)GLPQPHGGALR 156.67 1.20E-08 214340000 93067 103470 81715 24498 122050 85904 100920 110420 83672 102120 TRUE FALSE FALSE 86543.4839 95270.66037 113357.2364 57032.58206 106741.3509 75306.03789 75668.74858 85279.77645 90924.75633 76548.48731 1.130570792 1.244579269 1.480855343 0.745051719 1.394427959 0.983769119 0.988507432 1.114062204 1.18780605 1 16.22408625 -5.236998448 24.99856145 1.071734935 1.281259491 0.255498593 0.176016662 1150.932218 1177189.595 0.045848402 0.079367774 5.79E-06 5.236998448 0.209524556 S(ph)ISREPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_HeLa_A486_30min_R1 1 SISREPSPALGPNLDGSGLLPRPIFYCSFPTR 32 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 0 S(0.855)IS(0.439)REPS(0.706)PALGPNLDGSGLLPRPIFYCSFPTR 59.678 0.0089007 296130000 11381 18097 14740 5713.1 21150 15041 17430 21266 12192 17680 TRUE FALSE FALSE 10583.25067 16662.92781 20447.72275 13300.38552 18497.16978 13185.39435 13068.82964 16424.19603 13248.81238 13252.81292 0.798566367 1.257312535 1.542896808 1.003589623 1.395716509 0.994912885 0.986117417 1.239298867 0.999698136 1 13.69401099 -6.299502607 24.9694015 1.055343629 1.211002627 0.126802203 0.201986252 1236.138515 810900.7635 0.070916851 0.062543621 5.02E-07 6.299502607 0.155658998 S(ph)ISRPRS(ph)S(ph)R ddPTM_HeLa_A486_30min_R1 1 SISRPRSSR 9 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 0 S(0.938)IS(0.063)RPRS(0.999)S(1)R 67.115 0.0026156 0 1682000 1550400 1671500 124130 1909900 703590 592210 654320 736600 685480 TRUE FALSE FALSE 1564100.486 1427540.658 2318749.564 288980.9132 1670342.533 616788.2194 444032.7942 505345.6197 800449.0811 513831.3463 3.04399585 2.778228047 4.512666619 0.562404212 3.250760284 1.200370946 0.86416058 0.983485386 1.557805079 1 18.97093538 -5.76877419 0.905643195 1.066829039 3.318070554 0.460591054 0.922962341 0.534280043 0.946537585 0.447763963 0.718228223 1.70E-06 5.76877419 2.251241516 S(ph)ISTSGPLDKEDTGR ddPTM_HeLa_A485_30min_R1 1 SISTSGPLDKEDTGR 15 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.965)IS(0.021)T(0.008)S(0.005)GPLDKEDTGR 67.396 0.0054869 360730000 425870 475820 379280 400550 557440 458210 630120 622930 356170 539150 TRUE FALSE FALSE 520603.3123 531463.0099 519591.4552 422431.0323 501939.3163 482201.1671 495489.7144 470155.4408 427650.052 404749.8273 1.286234798 1.31306544 1.283734841 1.04368428 1.240122373 1.191356079 1.224187587 1.161595161 1.056578714 1 18.62667094 -1.000000372 0.045486702 0.543274802 2.311907932 0.591328029 0.067655325 447.4834758 1.546295993 15.16927735 57.69192535 0.099999914 1.000000372 1.768633131 S(ph)ISTSGPLDKEDTGR ddPTM_HeLa_A486_30min_R1 2 SISTSGPLDKEDTGR 15 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.939)IS(0.028)T(0.028)S(0.005)GPLDKEDTGR;S(0.671)IS(0.073)T(0.113)S(0.142)GPLDKEDTGR ; 142.88 4.60E-08 824590000 954090 1024810 672900 449890 1034030 1040670 1269850 1347400 763570 1280730 TRUE FALSE FALSE 887213.2179 943600.3233 933464.9009 1047366.656 904332.3155 912282.7162 952120.0989 1040626.434 829756.8624 960026.8718 0.924154567 0.982889491 0.972332055 1.090976395 0.941986461 0.950267897 0.991764009 1.083955527 0.864305872 1 19.87271526 -4.19537297 2.423294671 0.990622062 0.901685331 0.080081501 0.062571512 1.8643051 11.50793807 0.015779225 0.36933184 6.38E-05 4.19537297 -0.088936731 S(ph)ITS(ph)TPLSGK ddPTM_HeLa_A485_30min_R1 1 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 2 0 S(0.995)IT(0.005)S(0.533)T(0.467)PLSGK 134.75 0.00010638 406300000 1344700 1140000 768370 1434400 1271800 1144600 1633300 1343700 782410 1609400 TRUE FALSE FALSE 1643823.876 1273313.083 1052622.038 1512757.64 1145175.126 1204529.486 1284332.112 1014155.468 939432.5103 1208206.199 1.360549116 1.053887229 0.871227145 1.252069093 0.947830865 0.996956883 1.063007385 0.839389393 0.777543197 1 20.20443526 -1.521039195 1.089490148 0.967863665 199.9677526 0.462762925 0.125327308 756.8074342 2.386092666 0.039357195 374497.063 0.030127341 1.521039195 198.999889 S(ph)ITST(ph)PLSGK ddPTM_HeLa_A485_30min_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 2 0 S(1)ITS(0.122)T(0.878)PLSGK;S(0.996)IT(0.004)S(0.038)T(0.962)PLSGK ; 225.1 1.01E-16 1327260000 3270600 2820910 1894360 3307000 3108130 2636400 3773700 3075230 1807350 3477000 TRUE FALSE FALSE 3998133.687 3150790.886 2595162.595 3487653.036 2798673.664 2774437.827 2967418.167 2321025.021 2170068.567 2610247.889 1.531706511 1.207084928 0.994220743 1.336138629 1.072186927 1.062902048 1.136833853 0.889197164 0.831364935 1 21.31575539 -1 0.297059753 0.937694441 5.210018064 0.604871565 0.124853978 40.06034639 0.57059598 0.134848716 90.65025962 0.1 1 4.272323623 S(ph)ITST(ph)PLSGK ddPTM_HeLa_A486_30min_R1 4 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 2 0 S(0.99)IT(0.01)S(0.282)T(0.718)PLSGK;S(1)ITS(0.098)T(0.902)PLSGK;S(0.999)IT(0.001)S(0.017)T(0.983)PLSGK;S(0.998)IT(0.002)S(0.051)T(0.949)PLSGK ;;; 238.2 2.06E-20 2696600000 8468700 7292200 3650720 2673950 6293500 7105500 8579900 7555500 5261600 9106600 TRUE FALSE FALSE 7875087.862 6714339.514 5064376.554 6225090.734 5504110.545 6228895.653 6433118.271 5835277.585 5717679.724 6826248.086 1.15364806 0.983606138 0.741897524 0.911934441 0.806315633 0.912491837 0.942409094 0.854829404 0.837602099 1 22.70266142 -4.425257415 3.675326482 0.872503248 1.147457278 0.597222684 0.069821761 0.154856148 3.528779828 0.016994847 0.085605694 3.76E-05 4.425257415 0.27495403 S(ph)ITSTPLSGK ddPTM_HeLa_A485_30min_R1 1 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 S(0.865)IT(0.133)S(0.002)TPLSGK 191.04 5.70E-10 741470000 720110 696890 560760 725260 791710 729910 914850 889590 566010 911190 TRUE FALSE FALSE 880295.9851 778385.2234 768208.4592 764879.1173 712884.5725 768126.9589 719384.8239 671416.6577 679603.0152 684047.1022 1.286893815 1.137911733 1.123034447 1.118167323 1.042157141 1.122915303 1.051659778 0.981535709 0.993503244 1 19.38373614 -1 0.269260417 0.989554875 2.903086001 0.832660008 0.035846383 21.03593891 0.293547954 0.044040781 18.69233129 0.1 1 1.913531126 S(ph)ITSTPLSGK ddPTM_HeLa_A486_30min_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 S(0.999)IT(0.001)STPLSGK;S(0.999)ITSTPLSGK ; 174.24 1.43E-07 1196600000 1455620 1488560 765420 517530 1377880 1454930 1524750 1495760 1138490 1776640 TRUE FALSE FALSE 1353588.555 1370601.084 1061811.123 1204835.995 1205053.442 1275435.529 1143241.423 1155208.1 1237175.23 1331757.78 1.016392451 1.029166944 0.797300484 0.904696044 0.904859322 0.957708337 0.858445462 0.867431088 0.928979165 1 20.34490028 -4.726862981 24.99914659 0.898264266 1.022779992 0.453834299 0.05265315 149.9063013 108382.0269 0.012864238 0.034032184 1.88E-05 4.726862981 0.124515726 S(ph)IVPIS(ph)RGQR ddPTM_HeLa_A486_30min_R1 1 SIVPISRGQR 10 1 O75695 O75695 RP2 Protein XRP2 2 0 S(1)IVPIS(1)RGQR 41.644 0.012096 0 41893 42539 40666 8207.6 45537 40357 41072 40498 35288 42454 TRUE FALSE FALSE 38956.51704 39168.05472 56412.96427 19107.70759 39825.32484 35378.16366 30795.35118 31277.48947 38346.79225 31823.24207 1.224152993 1.230800263 1.772696954 0.600432462 1.25145404 1.111708341 0.967699995 0.982850503 1.204993261 1 14.9577932 -5.256997544 24.99983499 1.0279637 1.391375052 0.402582403 0.218331503 404.889659 2278818.84 0.058334316 0.096796799 5.53E-06 5.256997544 0.363411352 S(ph)IVVIHPDTGR ddPTM_HeLa_A485_30min_R1 4 SIVVIHPDTGR 11 0 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 1 0 S(1)IVVIHPDTGR;S(1)IVVIHPDTGR;S(1)IVVIHPDTGR;S(1)IVVIHPDTGR ;;; 151.74 4.09E-07 931763000 471912 573822 493280 444966 684155 541501 646524 713837 491804 631263 TRUE FALSE FALSE 576887.1963 640925.4913 675764.7991 469273.3659 616038.126 569853.155 508388.8658 538767.3565 590504.5517 473900.7516 1.217316483 1.352446665 1.425962708 0.990235538 1.299930679 1.202473626 1.072774972 1.136878038 1.246051098 1 18.85422542 -1.000000001 0.064761829 0.762132129 2.162152471 0.305864302 0.115013927 356.6444667 1.720156951 7.022149921 46.25377237 0.1 1.000000001 1.400020342 S(ph)IVVIHPDTGR ddPTM_HeLa_A486_30min_R1 4 SIVVIHPDTGR 11 0 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 1 0 S(1)IVVIHPDTGR;S(1)IVVIHPDTGR;S(1)IVVIHPDTGR;S(1)IVVIHPDTGR ;;; 133.16 2.36E-05 1171140000 539290 624850 444090 195030 624040 518280 624150 657020 454020 534960 TRUE FALSE FALSE 501488.5559 575334.6103 616053.5411 454039.6963 545767.0843 454339.8831 467981.0684 507430.8886 493374.8192 401002.534 1.250587 1.434740585 1.536283412 1.132261414 1.361006572 1.133010005 1.167027709 1.265405691 1.23035337 1 18.61325183 -5.271432892 24.99944348 1.199735175 1.409957361 0.454764874 0.110994975 616.1995964 1541463.14 0.030364037 0.045634062 5.35E-06 5.271432892 0.210222186 S(ph)IYGEKFEDENFILK ddPTM_HeLa_A486_30min_R1 1 SIYGEKFEDENFILK 15 1 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 1 0 S(1)IYGEKFEDENFILK 182.15 4.36E-18 36238000 64370 51899 24566 41655 57596 74651 88970 81242 49159 95659 TRUE FALSE FALSE 59857.99541 47786.33423 34078.6131 96974.94513 50371.77262 65441.31862 66708.76497 62744.9701 53420.1417 71705.36376 0.834777097 0.666426216 0.475258911 1.352408523 0.702482631 0.912641889 0.930317642 0.875038725 0.744995059 1 16.12979342 -5.180354509 24.99999996 0.915636274 0.659581922 0.312397533 0.184127917 126.8537794 39109.96708 0.048226238 0.083531593 6.60E-06 5.180354509 -0.256054352 S(ph)KDAS(ph)PINR ddPTM_HeLa_A486_30min_R1 1 SKDASPINR 9 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)KDAS(1)PINR 125.73 0.00032179 390260000 902680 880720 313760 549320 539720 1088600 1187200 944770 775660 1881400 TRUE FALSE FALSE 839406.7934 810928.5397 435256.2748 1278844.721 472023.2849 954299.6001 890150.0031 729666.4952 842894.8333 1410285.194 0.595203578 0.575010319 0.308629968 0.906798658 0.334700589 0.67667136 0.631184392 0.517389318 0.597676865 1 20.42755551 -13.99999984 0.382318531 7.158174784 0.560238413 0.393318569 0.159945735 605.7368358 4.514469954 3094.49268 0.101106996 1.00E-14 13.99999984 -6.597936372 S(ph)KDAS(ph)PINRWS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 3 0 S(1)KDAS(1)PINRWS(0.801)PT(0.199)R;S(1)KDAS(1)PINRWS(0.574)PT(0.426)R ; 109.37 0.00030225 1989610000 2009100 1799790 1220570 3755100 2696480 2291440 4059600 3791300 1618290 5081500 TRUE FALSE FALSE 2456017.364 2010259.784 1672109.635 3960231.605 2428008.983 2411416.255 3192233.296 2861477.73 1943065.959 3814775.568 0.643817 0.526966724 0.438324511 1.038129645 0.636474922 0.632125327 0.836807628 0.750103821 0.509352628 1 21.86316675 -14 0.154387715 2.08941384 0.585430381 0.247766688 0.167304743 202.9288333 1.832331915 68.94611507 0.804295438 1.00E-14 14 -1.503983459 S(ph)KDAS(ph)PINRWS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 3 0 S(1)KDAS(1)PINRWS(0.991)PT(0.009)R;S(1)KDAS(1)PINRWS(0.995)PT(0.005)R;S(1)KDAS(1)PINRWS(0.977)PT(0.023)R ;; 102.61 0.00053189 2796410000 2478450 2157530 1057610 1960650 2184940 2752040 4077340 3525200 1798190 4927270 TRUE FALSE FALSE 2304723.454 1986559.465 1467144.916 4564492.286 1910884.451 2412521.285 3057146.406 2722588.915 1954058.557 3693449.521 0.624002965 0.537860191 0.397228907 1.235834485 0.517371211 0.653189186 0.827721183 0.737139874 0.529060583 1 21.81653743 -14 0.199583362 2.371047581 0.630370336 0.154955155 0.221951669 282.9042508 2.797770583 156.1479955 0.539772586 1.00E-14 14 -1.740677246 S(ph)KDASPINRWS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.847)KDAS(0.153)PINRWS(0.603)PT(0.397)R 73.722 0.030877 650330000 439030 443130 292350 245020 490310 501100 678490 626120 368840 627060 TRUE FALSE FALSE 408256.2642 408014.7649 405555.7494 570418.9426 428810.7478 439279.3768 508724.6257 483566.1441 400811.3482 470040.0945 0.868556255 0.868042471 0.862810969 1.213553799 0.912285468 0.934557247 1.082300492 1.028776374 0.852717359 1 18.8424243 S(ph)KDEYEKS(ph)R ddPTM_HeLa_A485_30min_R1 1 SKDEYEKSR 9 2 Q13247;Q13247-3;A0A590UJP7 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(0.998)KDEY(0.002)EKS(1)R 117.83 0.014214 327580000 1329800 794750 254440 2928900 425200 777150 1432300 1238800 514260 2736000 TRUE FALSE FALSE 1625609.422 887689.0991 348567.9441 3088898.391 382865.595 817840.3723 1126277.404 934982.3576 617467.2649 2053965.552 0.791449214 0.432183051 0.169704864 1.503870592 0.186403124 0.398176285 0.548342889 0.455208393 0.300622016 1 20.96998056 -10.02620533 4.453753856 1.000019726 0.530934426 0.127506123 0.367439683 70335223.6 26389551.58 14293.24703 0.086766543 9.41E-11 10.02620533 -0.4690853 S(ph)KDEYEKS(ph)R ddPTM_HeLa_A486_30min_R1 2 SKDEYEKSR 9 2 Q13247;Q13247-3;A0A590UJP7 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)KDEYEKS(1)R;S(1)KDEYEKS(1)R ; 95.236 0.0099232 6971500000 18447000 6361900 2489400 9604400 2045630 16819300 12470200 7334000 9040100 50721000 TRUE FALSE FALSE 17153960.56 5857759.874 3453362.348 22359528.58 1789048.011 14744305.77 9350024.064 5664208.3 9823703.147 38020131.46 0.45118099 0.154069953 0.090829837 0.588097088 0.047055282 0.387802598 0.245922981 0.148979188 0.25838162 1 25.18026018 -10.45696276 3.234463817 1.012995019 0.258226927 0.653728875 0.16074385 111074372.6 142387006.9 13064954.57 0.039041538 3.49E-11 10.45696276 -0.754768092 S(ph)KDEYEKS(ph)RS(ph)R ddPTM_HeLa_A485_30min_R1 1 SKDEYEKSRSR 11 3 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 3 0 S(1)KDEY(0.013)EKS(0.991)RS(0.996)R 66.022 0.013192 247740000 191660 162980 98352 622200 225420 213610 449150 377670 166560 766930 TRUE FALSE FALSE 234294.1058 182039.0933 134736.4976 656189.2105 202976.3933 224794.2893 353185.4333 285045.8403 199987.0642 575748.4653 0.406938307 0.316178165 0.234019725 1.139715084 0.352543525 0.390438365 0.613437038 0.495087451 0.34735145 1 19.13507913 -11.10421783 2.447360656 1.929804745 0.483192548 0.294592217 0.242496987 20184546.89 5905619.703 104459589.9 0.063053978 7.87E-12 11.10421783 -1.446612197 S(ph)KDEYEKS(ph)RS(ph)R ddPTM_HeLa_A486_30min_R1 1 SKDEYEKSRSR 11 3 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 3 0 S(1)KDEY(0.002)EKS(0.998)RS(1)R 67.646 0.011069 261750000 288030 245120 93950 496200 149430 498110 569400 400240 206670 1057100 TRUE FALSE FALSE 267840.5844 225695.7985 130329.9561 1155178.677 130687.096 436658.2526 426930.0975 309114.0892 224584.322 792395.2794 0.338013857 0.284827288 0.164475937 1.457831346 0.164926646 0.551061148 0.538784251 0.390100872 0.283424609 1 19.59586076 -11.07004681 2.512423349 1.791122497 0.472716045 0.169262601 0.355922015 71964281.69 25148732.14 326095745.4 0.091886303 8.51E-12 11.07004681 -1.318406452 S(ph)KDRDPNRNVEHR ddPTM_HeLa_A485_30min_R1 4 SKDRDPNRNVEHR 13 3 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 S(1)KDRDPNRNVEHR;S(1)KDRDPNRNVEHR;S(1)KDRDPNRNVEHR;S(1)KDRDPNRNVEHR ;;; 138.91 4.71E-06 229691000 27287.6 86942 35131.9 15357.6 52642.4 102196 120279 300307 34466 19695.7 TRUE FALSE FALSE 33357.63248 97109.11061 48128.65177 16196.5468 47401.13782 107546.8245 94580.40906 226656.2374 41383.01006 14785.92446 2.256039693 6.567672576 3.255031628 1.095403053 3.205828485 7.273594885 6.396651714 15.32918946 2.798811137 1 13.85193683 -6.270777149 7.541490494 7.452310851 3.333183249 0.138242502 3.783203312 0.232038432 97.31507257 1.271819892 1.171013366 5.36E-07 6.270777149 -4.119127602 S(ph)KDRDPNRNVEHR ddPTM_HeLa_A486_30min_R1 1 SKDRDPNRNVEHR 13 3 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 S(1)KDRDPNRNVEHR 66.965 0.013116 35496000 16043 5028.9 4804.1 6147.7 16283 4440.1 13085 13652 2992 20020 TRUE FALSE FALSE 14918.46855 4630.391649 6664.376178 14312.15629 14240.63431 3892.325606 9810.994601 10543.73762 3251.348969 15006.86169 0.994109818 0.308551631 0.444088599 0.953707483 0.948941531 0.259369726 0.653767243 0.702594442 0.216657489 1 13.87333468 -6.249764143 24.76303964 0.553345506 0.703030236 0.067360889 0.293656868 2267.830215 4810042.298 0.098059284 0.097263398 5.63E-07 6.249764143 0.14968473 S(ph)KEPHELVGSSPHREASPMPGAK ddPTM_HeLa_A485_30min_R1 1 SKEPHELVGSSPHREASPMPGAK 23 2 Q3T8J9-3;Q3T8J9 Q3T8J9-3 GON4L GON-4-like protein 1 0 S(0.301)KEPHELVGS(0.301)S(0.301)PHREAS(0.096)PMPGAK 53.705 0.012766 96855000 79726 126170 74907 50908 157460 159240 196160 285390 101810 109940 TRUE FALSE FALSE 97460.77365 140924.484 102618.2164 53688.97513 141782.7295 167577.5602 154248.8135 215397.655 122242.3331 82533.9813 1.180856323 1.707472265 1.243345042 0.650507516 1.717870958 2.03040684 1.868912793 2.609805702 1.481115187 1 16.33270061 -5.982685262 24.77655917 1.899873274 1.229108474 0.273883067 0.455332164 254.3869737 364013.4298 0.138068846 0.156521465 1.04E-06 5.982685262 -0.6707648 S(ph)KESARDPKPEASR ddPTM_HeLa_A485_30min_R1 2 SKESARDPKPEASR 14 3 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(1)KESARDPKPEASR;S(0.76)KES(0.239)ARDPKPEAS(0.001)R ; 109.42 0.0016837 1387080000 1624990 1274060 723880 2194480 1508830 1774800 3065550 2743710 1135690 3172640 TRUE FALSE FALSE 1986463.419 1423050.234 991673.3352 2314358.886 1358605.587 1867725.784 2410570.199 2070810.821 1363612.566 2381759.236 0.834032 0.597478625 0.416361704 0.971701443 0.570421043 0.784179087 1.012096505 0.869445908 0.572523261 1 21.18359615 -6.516316221 24.57438158 0.859137039 0.675506304 0.192431144 0.17962233 423.4907399 1585840.095 0.066632879 0.053602161 3.05E-07 6.516316221 -0.183630735 S(ph)KESARDPKPEASR ddPTM_HeLa_A486_30min_R1 2 SKESARDPKPEASR 14 3 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.996)KES(0.004)ARDPKPEASR;S(0.977)KES(0.022)ARDPKPEASR ; 100.45 0.0038562 658870000 855874 601892 227485 483169 479780 732160 1114155 941061 477728 1494400 TRUE FALSE FALSE 795881.6523 554195.8859 315573.2843 1124841.85 419601.5186 641833.5433 835381.6347 726801.9535 519137.8477 1120192.513 0.710486495 0.494732717 0.281713438 1.00415048 0.374579828 0.572967178 0.745748275 0.648818792 0.463436277 1 20.09531526 -11.08218278 2.312556533 1.637272525 0.588606207 0.285930883 0.195080967 10053492.26 3103673.425 33742875.25 0.047764191 8.28E-12 11.08218278 -1.048666318 S(ph)KFSPQK ddPTM_HeLa_A486_30min_R1 1 SKFSPQK 7 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 S(0.882)KFS(0.118)PQK 62.262 0.015993 1160100000 2459000 2312600 917570 1166900 1818500 2948200 3126200 2875700 1953500 3767900 TRUE FALSE FALSE 2286636.798 2129341.154 1272877.677 2716602.172 1590406.773 2584481.059 2343991.694 2220965.886 2122830.953 2824393.315 0.809602822 0.753910988 0.450672954 0.961835647 0.563096777 0.915057066 0.829909801 0.786351488 0.751605997 1 21.42950958 -6.283492236 24.95165845 0.841564641 0.710209816 0.20829566 0.143487198 1443.45544 1633189.225 0.048713968 0.042995097 5.21E-07 6.283492236 -0.131354825 S(ph)KGIAYVEFVDVSSVPLAIGLTGQR ddPTM_HeLa_A486_30min_R1 1 SKGIAYVEFVDVSSVPLAIGLTGQR 25 1 G3XAC6;Q14498-2;Q14498;Q5QP23;H0Y4X3;A0A0U1RQH7;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 S(0.854)KGIAY(0.146)VEFVDVS(0.001)SVPLAIGLTGQR 118.3 6.41E-05 54712000 66107 74875 52232 53485 86204 90723 117860 101740 66134 115660 TRUE FALSE FALSE 61473.24068 68941.63231 72457.62922 124515.783 75391.4905 79530.51866 88370.1814 78576.02297 71866.54837 86697.98318 0.709050412 0.795193034 0.835747575 1.436201609 0.869587593 0.917328359 1.019287625 0.906318926 0.828929875 1 16.40371081 -5.015043234 24.98594557 0.996824365 0.76795876 0.2861275 0.160208474 882.6251969 1465995.665 0.044081236 0.079883061 9.66E-06 5.015043234 -0.228865605 S(ph)KGSLEITESQSADAEPPPPPKPDLSR ddPTM_HeLa_A485_30min_R1 1 SKGSLEITESQSADAEPPPPPKPDLSR 27 2 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 S(0.5)KGS(0.5)LEITESQSADAEPPPPPKPDLSR 168.87 3.11E-14 226820000 157750 90815 43840 156430 68988 133760 182440 188220 91234 364060 TRUE FALSE FALSE 192840.9433 101435.0243 60058.24033 164975.3748 62119.31249 140763.4668 143460.2036 142058.7499 109543.827 273306.542 0.705584805 0.371140125 0.219746808 0.60362761 0.227288055 0.515038776 0.524905853 0.519778081 0.400809385 1 18.06016047 -14 0.373309033 8.445886436 0.434674446 0.551069686 0.147226056 409.0993101 3.138561216 2459.187711 0.100284428 1.00E-14 14 -8.01121199 S(ph)KPIPIMPASPQKGHAVNLLDVPVPVAR ddPTM_HeLa_A486_30min_R1 1 SKPIPIMPASPQKGHAVNLLDVPVPVAR 28 2 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 S(0.817)KPIPIMPAS(0.183)PQKGHAVNLLDVPVPVAR 169.35 1.98E-14 5866700000 1193600 882160 555490 382610 980080 950570 1227000 1291800 706570 1304400 TRUE FALSE FALSE 1109934.804 812254.4288 770590.6045 890735.416 857149.2275 833298.3381 919991.6221 997685.3398 767816.0565 977769.7498 1.135169915 0.830721577 0.788110498 0.910986882 0.876637089 0.852243934 0.940908248 1.020368384 0.785272869 1 19.89913525 -6.796586259 23.54731292 0.938334853 0.890366607 0.026099026 0.104869549 369.192969 247342.2277 0.043175673 0.029111079 1.60E-07 6.796586259 -0.047968246 S(ph)KPLTR ddPTM_HeLa_A485_30min_R1 2 SKPLTR 6 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 S(0.999)KPLT(0.001)R;S(0.965)KPLT(0.035)R ; 71.379 0.0082001 0 424780 174741 90057 444840 158540 504380 221471 245741 253906 341730 TRUE FALSE FALSE 519270.8455 195175.4399 123372.8319 469140.4828 142755.2009 530788.5569 174151.9116 185472.6344 304862.6052 256543.0001 2.024108416 0.760790354 0.48090508 1.828701164 0.556457206 2.069004248 0.678841019 0.722968993 1.188348952 1 17.96884114 -4.250942074 23.82592154 1.037341528 2.024109502 0.257141164 0.505913072 1085.61523 2463946.013 0.121102692 1.607900287 5.61E-05 4.250942074 0.986767975 S(ph)KPLTR ddPTM_HeLa_A486_30min_R1 2 SKPLTR 6 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 S(1)KPLTR;S(0.997)KPLT(0.003)R ; 73.26 0.01276 162281000 291800 185730 217830 130892 169496 428240 263250 253480 356980 498820 TRUE FALSE FALSE 271346.3269 171012.0784 302179.6097 304723.1909 148236.2312 375408.1028 197382.0656 195768.1374 387923.3138 373912.2252 0.725695253 0.457358885 0.808156539 0.814959154 0.396446602 1.004000612 0.527883424 0.523567095 1.037471598 1 18.51234012 -7.773197232 24.99436347 1.018736153 0.659433598 0.398212138 0.177732212 243.5762909 517767.8694 0.159725616 0.042601046 1.69E-08 7.773197232 -0.359302555 S(ph)KQNSLESPK ddPTM_HeLa_A486_30min_R1 1 SKQNSLESPK 10 1 O95197-6 O95197-6 RTN3 Reticulon-3 1 0 S(0.611)KQNS(0.389)LESPK 49.627 0.024325 159120000 202780 497190 634460 26122 649750 228640 98359 209920 281480 63258 TRUE FALSE FALSE 188566.1692 457790.8537 880139.9034 60813.33613 568252.2963 200432.7214 73748.53786 162125.7985 305878.913 47417.78506 3.976697117 9.654412434 18.56138793 1.282500565 11.98394855 4.226952423 1.555292761 3.419092611 6.450721236 1 15.53314065 -6.389447771 5.969008687 3.259083528 9.198181946 0.290856553 4.516212899 0.31657362 14.06646651 1.599677678 1.403503852 4.08E-07 6.389447771 5.939098418 S(ph)KS(ph)PAS(ph)VDR ddPTM_HeLa_A485_30min_R1 1 SKSPASVDR 9 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 3 0 S(1)KS(1)PAS(1)VDR 122.78 0.00026437 0 628800 567670 324700 997600 609120 518190 849450 712640 378310 1239900 TRUE FALSE FALSE 768674.3907 634054.0684 444820.0419 1052096.362 548473.874 545321.6271 667958.0681 537863.9226 454233.3469 930815.7487 0.825807247 0.681181071 0.477881947 1.130294973 0.589240002 0.58585346 0.717605035 0.577841451 0.487994909 1 19.82813609 -10.73446437 6.587053294 1.005775185 0.675911713 0.223533677 0.181787701 0.015427019 0.00062189 0.176119999 0.042289667 1.84E-11 10.73446437 -0.329863473 S(ph)KS(ph)PFR ddPTM_HeLa_A485_30min_R1 6 SKSPFR 6 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 2 0 S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR ;;;;; 107.21 0.01076 9255690000 1944633 1605975 1114606 4014640 2461330 1786544 3662960 2906280 1587683 5043130 TRUE FALSE FALSE 2377209.902 1793779.806 1526945.142 4233949.618 2216271.343 1880084.681 2880338.672 2193510.273 1906316.415 3785970.503 0.627899742 0.473796561 0.403316703 1.118326097 0.585390547 0.496592533 0.760792687 0.579378596 0.503521201 1 21.85223174 -11.32086954 2.139472163 2.848432931 0.619548165 0.264276204 0.191874826 18680954.81 2252939.214 167037744.4 0.048560957 4.78E-12 11.32086954 -2.228884766 S(ph)KS(ph)PFR ddPTM_HeLa_A486_30min_R1 6 SKSPFR 6 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 2 0 S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR;S(1)KS(1)PFR ;;;;; 85.29 0.0052949 10545900000 1924160 1671660 863283 1537822 1638080 2216690 3149580 2608170 1373659 3878330 TRUE FALSE FALSE 1789286.32 1539191.574 1197569.297 3580127.333 1432616.732 1943217.325 2361521.771 2014346.627 1492728.868 2907170.924 0.615473382 0.529446535 0.411936322 1.231481542 0.492787239 0.668422111 0.812309229 0.692888956 0.513464432 1 21.47118447 -11.58604726 2.125781735 6.831688652 0.668938276 0.174667234 0.219351739 6784364.862 468027.973 190346965.5 0.057832006 2.59E-12 11.58604726 -6.162750376 S(ph)KS(ph)PFRK ddPTM_HeLa_A486_30min_R1 2 SKSPFRK 7 2 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 2 0 S(1)KS(1)PFRK;S(1)KS(1)PFRK ; 128.01 0.0011057 1844030000 370770 249550 133044 328810 216890 497250 563340 415230 257130 810570 TRUE FALSE FALSE 344780.9377 229774.7492 184562.1998 765486.2971 189685.6338 435904.3507 422386.3736 320691.1934 279418.2354 607597.9961 0.567449103 0.378169037 0.303757091 1.25985652 0.312189367 0.717422298 0.695174073 0.527801598 0.45987353 1 19.21275759 -11.37403909 2.055677918 3.443670201 0.584101408 0.184482048 0.264683479 8951461.435 858655.2468 101741965.5 0.07125947 4.23E-12 11.37403909 -2.859568793 S(ph)KS(ph)PPKS(ph)PEEEGAVS(ph)S ddPTM_HeLa_A485_30min_R1 3 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(1)KS(1)PPKS(1)PEEEGAVS(0.544)S(0.456);S(1)KS(1)PPKS(1)PEEEGAVS(0.551)S(0.449);S(1)KS(1)PPKS(1)PEEEGAVS(0.532)S(0.468) ;; 113.73 5.51E-05 5625400000 1955990 1503672 765221 6684340 2126560 1562990 4031050 2679640 903084 8123950 TRUE FALSE FALSE 2391093.227 1679513.36 1048308.091 7049488.569 1914832.22 1644825.74 3169783.237 2022454.088 1084324.675 6098798.775 0.392059702 0.275384288 0.171887634 1.155881482 0.313968749 0.269696673 0.519738944 0.331615153 0.177793155 1 22.54009369 -10.2703746 5.737970989 1.000038544 0.407713243 0.305862234 0.270585651 0.000134852 1.71E-05 0.264801187 0.064219559 5.37E-11 10.2703746 -0.592325301 S(ph)KS(ph)PPKS(ph)PEEEGAVS(ph)S ddPTM_HeLa_A486_30min_R1 3 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(1)KS(1)PPKS(1)PEEEGAVS(0.567)S(0.433);S(1)KS(1)PPKS(1)PEEEGAVS(0.544)S(0.456);S(1)KS(1)PPKS(1)PEEEGAVS(0.532)S(0.468) ;; 125.37 8.41E-06 4369090000 1433430 1441200 303155 2827170 757152 1808550 3107690 2429340 851691 6350450 TRUE FALSE FALSE 1332953.959 1326994.063 420544.7348 6581794.637 662182.936 1585429.489 2330113.092 1876232.314 925516.2616 4760255.986 0.280017285 0.278765274 0.088344983 1.382655609 0.139106581 0.333055511 0.489493233 0.394145256 0.194425733 1 22.18260773 -10.39768693 2.914455163 1.010361077 0.407223376 0.211285574 0.348632193 43091448.56 51066483.31 3747407.373 0.087848412 4.00E-11 10.39768693 -0.603137701 S(ph)KS(ph)PPKS(ph)PEEEGAVSS ddPTM_HeLa_A485_30min_R1 4 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 3 0 S(1)KS(1)PPKS(1)PEEEGAVSS;S(1)KS(1)PPKS(1)PEEEGAVSS;S(1)KS(1)PPKS(1)PEEEGAVSS;S(1)KS(1)PPKS(0.996)PEEEGAVS(0.002)S(0.002) ;;; 96.708 0.00071838 8412500000 2279850 1437320 785070 7583900 2179020 1716410 4474620 3055590 1059090 9549700 TRUE FALSE FALSE 2786994.767 1605402.071 1075500.062 7998189.254 1962069.118 1806278.574 3518580.883 2306201.762 1271639.648 7169135.539 0.388749069 0.223932448 0.150018096 1.115642076 0.273682804 0.251952075 0.490795698 0.321684776 0.177376985 1 22.77336774 -10.13394124 4.556230588 1.000067559 0.382623825 0.331669237 0.265165211 727989030.4 1.59E+12 222880155.2 0.067034839 7.35E-11 10.13394124 -0.617443734 S(ph)KS(ph)PPKS(ph)PEEEGAVSS ddPTM_HeLa_A486_30min_R1 4 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 3 0 S(1)KS(1)PPKS(1)PEEEGAVSS;S(0.876)KS(0.933)PPKS(0.561)PEEEGAVS(0.345)S(0.285);S(0.942)KS(0.709)PPKS(0.741)PEEEGAVS(0.31)S(0.299);S(1)KS(1)PPKS(1)PEEEGAVSS ;;; 119.02 8.13E-05 8404890000 4232900 3678430 707620 6920320 1855350 5164640 8398500 6134400 2199300 17824000 TRUE FALSE FALSE 3936195.569 3386937.81 981629.4147 16110854.69 1622634.703 4527479.227 6297106.47 4737731.033 2389937.095 13360754.39 0.294608781 0.253498995 0.073471107 1.205834209 0.121447836 0.338864041 0.471313691 0.354600563 0.178877407 1 23.67149813 -10.99040981 2.533724581 1.592347195 0.373428833 0.282947299 0.302645748 40513512.91 16741407.31 140241615 0.078442546 1.02E-11 10.99040981 -1.218918362 S(ph)KS(ph)PPKS(ph)PEEEGAVSS(ph) ddPTM_HeLa_A486_30min_R1 2 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(1)KS(1)PPKS(1)PEEEGAVS(0.042)S(0.958);S(1)KS(1)PPKS(1)PEEEGAVS(0.485)S(0.515) ; 185.96 3.10E-18 3526630000 1444500 1278910 306050 2664200 706290 1755390 2963200 2182500 895950 6320100 TRUE FALSE FALSE 1343248.009 1177564.514 424560.7563 6202392.241 617700.5223 1538827.829 2221776.018 1685592.394 973611.6674 4737505.823 0.283534851 0.248562125 0.089616936 1.309210473 0.130385174 0.32481814 0.468975892 0.355797429 0.205511445 1 22.17569629 -10.70994157 2.770903165 1.096209104 0.387547163 0.242685528 0.328512404 141928510.2 122089885.7 94989870.58 0.082361932 1.95E-11 10.70994157 -0.708661941 S(ph)KS(ph)PPKSPEEEGAVSS ddPTM_HeLa_A485_30min_R1 2 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.998)KS(0.998)PPKS(0.005)PEEEGAVSS;S(1)KS(0.997)PPKS(0.004)PEEEGAVSS ; 125.73 8.16E-05 3582800000 2841000 1614430 905140 8576200 2455200 2333700 5496000 3796100 1525650 10710000 TRUE FALSE FALSE 3472970.649 1803223.545 1239988.952 9044696.09 2210751.667 2455888.923 4321734.702 2865100.523 1831833.961 8040194.103 0.431951095 0.224276121 0.154223758 1.124935042 0.274962475 0.305451447 0.537516215 0.356347183 0.227834544 1 22.9387989 -10.3329738 4.602934361 1.000502896 0.408535467 0.315486561 0.263226733 0.001364241 0.000197696 0.255852475 0.062002401 4.65E-11 10.3329738 -0.591967429 S(ph)KS(ph)PPKSPEEEGAVSS ddPTM_HeLa_A486_30min_R1 3 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.997)KS(0.987)PPKS(0.016)PEEEGAVSS;S(0.997)KS(0.941)PPKS(0.062)PEEEGAVSS;S(1)KS(0.995)PPKS(0.005)PEEEGAVSS ;; 121.35 0.00017292 5900000000 8978600 6627290 1654670 10582100 3854490 10506100 16239500 12058300 4959940 32144000 TRUE FALSE FALSE 8349246.506 6102119.404 2295402.538 24635663.59 3371023.923 9209964.2 12176205.34 9312888.321 5389871.593 24094933.18 0.346514615 0.25325322 0.095264947 1.022441665 0.139905925 0.382236553 0.50534298 0.386508161 0.223693154 1 24.52222646 -10.16592906 3.800261921 1.000374128 0.377954033 0.367627774 0.246697981 222216842 378918727.8 1124407.659 0.059097431 6.82E-11 10.16592906 -0.622420095 S(ph)KS(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A485_30min_R1 2 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 2 0 S(1)KS(1)PPKVPIVIQDDS(0.001)LPAGPPPQIR;S(1)KS(1)PPKVPIVIQDDSLPAGPPPQIR ; 105.51 0.00030548 182320000 159437 91419 55230 391190 155912 128237 295730 237360 92130 522200 TRUE FALSE FALSE 194903.2106 102109.6568 75661.87531 412559.7192 140388.8538 134951.291 232544.8696 179147.0878 110619.6459 392025.1504 0.49717017 0.260467107 0.193002605 1.052380743 0.358111855 0.344241411 0.59318865 0.456978558 0.28217487 1 18.58058669 -10.72544383 2.63695988 1.103368835 0.452103493 0.338069494 0.231407596 43185481.28 34436622.05 29372529.15 0.059724544 1.88E-11 10.72544383 -0.651265342 S(ph)KS(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A486_30min_R1 3 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 2 0 S(0.999)KS(0.999)PPKVPIVIQDDS(0.002)LPAGPPPQIR;S(0.999)KS(0.999)PPKVPIVIQDDS(0.001)LPAGPPPQIR;S(1)KS(1)PPKVPIVIQDDSLPAGPPPQIR ;; 84.097 0.0031638 583105000 325397 269076 102379 367190 222758 389324 622630 494560 233309 869580 TRUE FALSE FALSE 302588.3507 247753.4378 142022.8906 854836.8768 194817.6145 341293.1632 466841.3885 381959.4842 253532.412 651831.508 0.464212526 0.380088159 0.217882825 1.311438411 0.298877259 0.52359108 0.716199482 0.58597886 0.388953907 1 19.31413956 -11.17804925 2.393037994 2.200651074 0.549874223 0.181629746 0.290674528 22144240.78 5342107.278 143916912 0.072963281 6.64E-12 11.17804925 -1.650776851 S(ph)KS(ph)PTLR ddPTM_HeLa_A485_30min_R1 3 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.989)KS(0.954)PT(0.057)LR;S(0.996)KS(0.715)PT(0.289)LR;S(0.981)KS(0.682)PT(0.337)LR ;; 91.636 0.0035415 2400200000 1816450 1569460 969190 3079000 2080400 1823720 3149210 3231300 1312350 3951320 TRUE FALSE FALSE 2220513.036 1752994.695 1327733.712 3247197.974 1873268.071 1919207.159 2476355.557 2438818.609 1575726.607 2966328.643 0.748572833 0.590964423 0.44760169 1.094685844 0.63151063 0.646997481 0.834821712 0.822167367 0.531204326 1 21.50024701 -11.4650686 2.290684437 4.380331672 0.709244949 0.20484826 0.17398152 10009464.33 684930.4069 177097510.8 0.044975134 3.43E-12 11.4650686 -3.671086723 S(ph)KS(ph)PTLR ddPTM_HeLa_A486_30min_R1 3 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)KS(0.703)PT(0.297)LR;S(1)KS(0.795)PT(0.205)LR;S(0.999)KS(0.655)PT(0.346)LR ;; 104.43 0.0039067 3971800000 2117600 1691530 817860 1361070 1465350 2297000 2961700 2593400 1424990 3950100 TRUE FALSE FALSE 1969167.175 1557487.002 1134557.295 3168639.745 1281552.139 2013619.494 2220651.334 2002939.434 1548509.281 2960969.249 0.665041414 0.526005801 0.383170915 1.070135985 0.432815079 0.680054173 0.749974467 0.676447226 0.52297378 1 21.49763808 -11.04537584 2.527151208 1.473508449 0.636425299 0.263919631 0.183297875 50759276.47 18422056.38 138941796.4 0.045485313 9.01E-12 11.04537584 -0.83708315 S(ph)KS(ph)SGS(ph)SRSK ddPTM_HeLa_A485_30min_R1 1 SKSSGSSRSK 10 2 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;A0A087WWG0;A0A096LNL6;A0A096LNL7;A0A096LPG6 P46100-4 ATRX Transcriptional regulator ATRX 3 0 S(0.981)KS(0.981)S(0.077)GS(0.32)S(0.32)RS(0.32)K 41.704 0.011803 0 960930 635630 452090 675250 1015500 452140 383130 331840 255550 327640 TRUE FALSE FALSE 1174685.563 709961.3993 619336.904 712137.1977 914393.2544 475813.3513 301271.1456 250455.7197 306836.541 245965.3778 4.775816719 2.886428186 2.517984074 2.89527414 3.717568963 1.934472874 1.22485184 1.018255992 1.247478583 1 17.90809573 -6.482480744 3.117810253 1.132875384 3.257939394 0.76375115 0.58751089 0.135244575 2.645734254 0.239065102 0.195340768 3.29E-07 6.482480744 2.125064009 S(ph)KSATLLYDQPLQVFTGSSSSSDLISGTK ddPTM_HeLa_A485_30min_R1 2 SKSATLLYDQPLQVFTGSSSSSDLISGTK 29 1 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7 Q96RT1-6 ERBB2IP Protein LAP2 1 0 S(0.546)KS(0.382)AT(0.072)LLYDQPLQVFTGSSSSSDLISGTK;S(0.453)KS(0.453)AT(0.094)LLYDQPLQVFTGSSSSSDLISGTK ; 187.86 6.03E-21 241860000 168531 125464 73868 163220 104285 148425 209183 185864 97202 322210 TRUE FALSE FALSE 206020.1395 140135.9234 101194.8471 172136.2953 93902.01923 156196.3035 164489.3432 140280.5626 116709.5498 241888.9768 0.851713634 0.579339849 0.418352454 0.711633484 0.38820297 0.645735517 0.680020005 0.579937806 0.482492222 1 17.8839855 -10.1606276 3.853211517 1.000218135 0.588691351 0.457493322 0.132869752 84064324.21 151574118.8 248921.4201 0.031645372 6.91E-11 10.1606276 -0.411526784 S(ph)KSATLLYDQPLQVFTGSSSSSDLISGTK ddPTM_HeLa_A486_30min_R1 1 SKSATLLYDQPLQVFTGSSSSSDLISGTK 29 1 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7 Q96RT1-6 ERBB2IP Protein LAP2 1 0 S(0.439)KS(0.439)AT(0.123)LLYDQPLQVFTGSSSSSDLISGTK 152.31 8.54E-10 96724000 112680 84571 47087 45427 125220 134870 151870 133920 139000 182380 TRUE FALSE FALSE 104781.7139 77869.28596 65320.34743 105756.3518 109513.74 118231.1107 113870.5197 103429.3395 151048.6319 136710.8609 0.766447619 0.569591073 0.477799255 0.773576811 0.801061007 0.864826027 0.832929578 0.756555396 1.104876605 1 17.06076834 -6.391113291 0.501205406 1.002259204 0.584908988 0.591640322 0.110420418 0.762121425 0.409774451 0.106216998 0.125675972 4.06E-07 6.391113291 -0.417350216 S(ph)KSCDDGLNTFR ddPTM_HeLa_A486_30min_R1 1 SKSCDDGLNTFR 12 1 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.62)KS(0.38)CDDGLNTFR 124.43 2.16E-05 388090000 203190 263190 130420 109620 216200 277220 322280 298840 225640 330690 TRUE FALSE FALSE 188947.4303 242333.8659 180922.1168 255200.8999 189082.18 243019.415 241642.1353 230800.6556 245198.6569 247883.0716 0.762244187 0.977613616 0.729868787 1.029521291 0.762787789 0.980379231 0.974823064 0.931086799 0.989170641 1 17.91930022 -5.997500965 0.37018048 1.005791577 0.804612083 0.273988968 0.092806315 2.681994312 0.69016545 0.09443704 0.212855078 1.01E-06 5.997500965 -0.201179494 S(ph)KSDATASISLSSNLK ddPTM_HeLa_A485_30min_R1 1 SKSDATASISLSSNLK 16 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 S(0.499)KS(0.499)DAT(0.001)ASISLSSNLK 82.609 0.0013858 651320000 801710 549230 420740 1343500 865910 755330 1169500 996580 658140 1597900 TRUE FALSE FALSE 980047.6236 613457.6708 576389.2345 1416892.003 779696.96 794877.9108 919626.7711 752167.1924 790222.6612 1199572.937 0.816997111 0.511396724 0.480495363 1.181163695 0.649978785 0.662634081 0.766628475 0.627029144 0.658753325 1 20.19408945 -11.08334913 2.450833326 1.47343507 0.704251657 0.184241719 0.185477326 22408629.81 6352547.167 59300291.48 0.048694158 8.25E-12 11.08334913 -0.769183412 S(ph)KSDATASISLSSNLK ddPTM_HeLa_A486_30min_R1 2 SKSDATASISLSSNLK 16 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 S(0.5)KS(0.5)DATASISLSSNLK;S(0.498)KS(0.498)DAT(0.005)ASISLSSNLK ; 240.31 8.94E-42 1853470000 2177470 2244570 993180 1080720 1798880 2686500 3059600 2774300 1997680 3129200 TRUE FALSE FALSE 2024840.597 2066702.099 1377765.894 2515970.777 1573247.697 2355066.944 2294055.719 2142652.453 2170840.511 2345627.952 0.863240309 0.881086916 0.587376141 1.072621416 0.670714934 1.004024079 0.978013464 0.913466456 0.925483732 1 21.16154277 -6.295695274 24.995808 0.959652705 0.820344575 0.265737645 0.123721929 913.8985341 666849.7298 0.041487969 0.036590714 5.06E-07 6.295695274 -0.139308131 S(ph)KSDSYTLDPDTLR ddPTM_HeLa_A485_30min_R1 2 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.641)KS(0.358)DS(0.001)YTLDPDTLR;S(0.496)KS(0.496)DS(0.008)YT(0.001)LDPDTLR ; 159.26 1.93E-09 480510000 720640 774130 602387 881180 927620 893360 1129180 1296170 783240 1289610 TRUE FALSE FALSE 880943.8818 864657.7695 825235.0187 929316.6321 835262.8957 940134.9482 887921.4684 978282.2752 940429.0837 968133.9605 0.909940068 0.8931179 0.852397553 0.959905003 0.862755496 0.971079403 0.917147321 1.010482346 0.97138322 1 19.88484716 -6.817129915 0.832691789 0.99960565 0.892702153 0.55446232 0.035264021 0.447440641 0.600861205 0.027043963 0.015414959 1.52E-07 6.817129915 -0.106903497 S(ph)KSDSYTLDPDTLR ddPTM_HeLa_A486_30min_R1 5 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.657)KS(0.337)DS(0.006)YTLDPDTLR;S(0.5)KS(0.5)DSYTLDPDTLR;S(0.828)KS(0.17)DS(0.001)YTLDPDTLR;S(0.5)KS(0.5)DSYTLDPDTLR;S(0.657)KS(0.341)DS(0.002)YTLDPDTLR ;;;; 230.05 1.49E-28 4752230000 5792650 5437970 3220970 2012320 5536090 5393910 6623730 6124150 4550930 7036370 TRUE FALSE FALSE 5386615.148 5007045.452 4468215.845 4684782.657 4841701.97 4728464.225 4966402.695 4729814.734 4945408.277 5274417.153 1.021272113 0.949307821 0.84714874 0.888208597 0.917959621 0.896490378 0.941602181 0.896746427 0.937621757 1 22.33058025 -8.033073811 14.67306646 1.000000003 0.917227388 0.231142983 0.043648283 21.6817611 9620.737471 0.043758643 0.011298889 9.27E-09 8.033073811 -0.082772615 S(ph)KSDSYTLDPDTLRK ddPTM_HeLa_A485_30min_R1 2 SKSDSYTLDPDTLRK 15 2 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.709)KS(0.29)DS(0.001)YTLDPDTLRK;S(0.5)KS(0.5)DSYTLDPDTLRK ; 130.11 8.52E-06 657570000 839780 837040 479290 931000 1039040 1262700 1714310 2212400 758370 1384440 TRUE FALSE FALSE 1026586.164 934924.5467 656599.3159 981858.1726 935589.5293 1328813.019 1348033.664 1669805.431 910567.9028 1039324.587 0.987743557 0.89955011 0.631755781 0.944707924 0.900189932 1.278535153 1.297028552 1.606625545 0.876115041 1 19.98721486 -6.224061736 4.84547991 1.255981195 0.860883166 0.401681781 0.203211578 0.183265969 10.76992477 0.067747747 0.066028404 5.97E-07 6.224061736 -0.395098029 S(ph)KSDSYTLDPDTLRK ddPTM_HeLa_A486_30min_R1 1 SKSDSYTLDPDTLRK 15 2 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.61)KS(0.386)DS(0.004)YTLDPDTLRK 109.72 0.00010856 233730000 530640 429910 194040 219170 439430 465430 607280 601390 334420 696550 TRUE FALSE FALSE 493444.8762 395842.3659 269177.4846 510238.8362 384312.5919 408009.9787 455332.1208 464466.6253 363407.7949 522129.3462 0.945062521 0.758130852 0.515537934 0.977226888 0.736048634 0.78143468 0.872067667 0.889562383 0.696011051 1 18.99404772 -13.99999997 0.259970574 2.310994776 0.779247208 0.174244858 0.128723158 343.4869514 3.379982109 240.5983793 0.170872598 1.00E-14 13.99999997 -1.531747568 S(ph)KSEDMDNVQSK ddPTM_HeLa_A485_30min_R1 2 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.571)KS(0.429)EDMDNVQSK;S(0.5)KS(0.5)EDMDNVQSK ; 201.57 2.19E-17 1228410000 1247600 881350 556840 1993420 1163140 1107000 2023460 1686380 861060 2629060 TRUE FALSE FALSE 1525124.316 984416.2158 762838.288 2102315.487 1047333.698 1164960.808 1591131.241 1272792.661 1033866.844 1973683.726 0.772729843 0.498771005 0.386504827 1.065173441 0.530649204 0.590246954 0.80617336 0.644881773 0.523825996 1 20.91245939 -11.08968515 2.570038529 1.601103584 0.646449111 0.249736359 0.183786769 19049862.13 7819297.215 66836652.73 0.044892187 8.13E-12 11.08968515 -0.954654473 S(ph)KSEDMDNVQSK ddPTM_HeLa_A486_30min_R1 3 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.5)KS(0.5)EDMDNVQSK;S(0.5)KS(0.5)EDMDNVQSK;S(0.5)KS(0.5)EDMDNVQSK ;; 98.507 0.0016707 535120000 1109260 996950 420110 516890 814030 1182280 1476090 1365880 780970 1735790 TRUE FALSE FALSE 1031506.602 917948.0512 582787.8429 1203346.042 711926.7669 1036422.314 1106756.67 1054898.941 848665.1084 1301136.886 0.792773315 0.705496909 0.447906634 0.924842002 0.54715747 0.796551328 0.850607405 0.810751699 0.652248904 1 20.31134132 -6.489929998 24.44307582 0.814195352 0.683824141 0.187988299 0.143823435 894.9344124 663909.3181 0.048750346 0.042957793 3.24E-07 6.489929998 -0.130371211 S(ph)KSEDMDNVQSKR ddPTM_HeLa_A485_30min_R1 1 SKSEDMDNVQSKR 13 2 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.499)KS(0.499)EDMDNVQS(0.001)KR 60.918 0.019895 190230000 77420 94550 57134 92472 95327 120390 198170 234010 69610 109610 TRUE FALSE FALSE 94641.8119 105606.8 78270.24414 97523.51121 85835.90917 126693.4342 155829.3606 176618.6806 83580.0885 82286.24422 1.150153501 1.283407707 0.951194758 1.185173927 1.043138011 1.539667236 1.893747395 2.146393753 1.015723701 1 16.32836366 -6.333414437 5.222534429 1.621126273 1.125824647 0.227305625 0.342300544 0.266775138 13.6256702 0.119513518 0.105497023 4.64E-07 6.333414437 -0.495301626 S(ph)KSEEAHAEDSVMDHHFR ddPTM_HeLa_A485_30min_R1 6 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.582)KS(0.418)EEAHAEDSVMDHHFR;S(0.679)KS(0.321)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR ;;;;; 280.4 1.81E-69 14296890000 4095380 4829210 2872520 5069470 6149910 5009680 8470730 9368270 6393760 8770130 TRUE FALSE FALSE 5006383.152 5393944.101 3935184.684 5346402.31 5537603.367 5271979.098 6660889.336 7070687.094 7676928.985 6583897.993 0.760398043 0.819263012 0.597698307 0.812042093 0.841082801 0.800738271 1.011693885 1.073936307 1.166015785 1 22.65051055 -6.789951921 1.583039657 1.098552441 0.756387682 0.791924958 0.073633796 0.16811508 0.856050988 0.042744301 0.025151962 1.62E-07 6.789951921 -0.34216476 S(ph)KSEEAHAEDSVMDHHFR ddPTM_HeLa_A486_30min_R1 5 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.673)KS(0.327)EEAHAEDSVMDHHFR;S(0.664)KS(0.336)EEAHAEDSVMDHHFR;S(0.681)KS(0.319)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR ;;;; 273.66 3.15E-69 13082300000 3545750 2812230 1720200 883690 3109850 4414310 5217410 6034200 3167260 4852530 TRUE FALSE FALSE 3297211.235 2589378.653 2386307.509 2057274.979 2719783.615 3869717.314 3911958.834 4660344.386 3441800.647 3637424.903 0.906468538 0.711871371 0.6560431 0.565585554 0.747722273 1.063861775 1.075474804 1.281220784 0.946219025 1 21.79448603 -6.253141429 4.007466795 1.095438284 0.700904627 0.709471551 0.113687146 0.115876153 4.4075529 0.040575846 0.038213874 5.58E-07 6.253141429 -0.394533658 S(ph)KSFNNHRPMDPEVIAQDIEATMNSALNELR ddPTM_HeLa_A485_30min_R1 1 SKSFNNHRPMDPEVIAQDIEATMNSALNELR 31 2 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 S(0.5)KS(0.5)FNNHRPMDPEVIAQDIEATMNSALNELR 95.878 0.00050157 118240000 25747 22704 18408 20048 28425 25571 35252 37569 22217 38923 TRUE FALSE FALSE 31474.33132 25359.0353 25217.88522 21143.17148 25594.90719 26909.85802 27720.12222 28355.14384 26675.74811 29220.21242 1.077142454 0.867859375 0.863028812 0.723580348 0.875931592 0.920933004 0.948662584 0.970394857 0.912921088 1 14.83467905 -6.475327262 2.903774104 0.954980925 0.871456794 0.154423803 0.082676176 0.51417904 8.635046422 0.034497912 0.028167453 3.35E-07 6.475327262 -0.083524131 S(ph)KSFNNHRPMDPEVIAQDIEATMNSALNELR ddPTM_HeLa_A486_30min_R1 1 SKSFNNHRPMDPEVIAQDIEATMNSALNELR 31 2 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 S(0.5)KS(0.5)FNNHRPMDPEVIAQDIEATMNSALNELR 191.42 6.21E-21 161680000 57932 44685 31606 20054 54022 47080 53861 61272 44182 61960 TRUE FALSE FALSE 53871.26596 41143.99786 43844.68964 46686.72547 47246.05702 41271.74827 40384.40812 47321.70316 48011.73133 46444.81271 1.159898443 0.885868528 0.944016933 1.005208607 1.017251535 0.888619113 0.869513854 1.018880267 1.033737215 1 15.50322985 S(ph)KSHESQLGNRIDDVSSMR ddPTM_HeLa_A485_30min_R1 1 SKSHESQLGNRIDDVSSMR 19 2 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QLI1 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 S(0.5)KS(0.5)HESQLGNRIDDVSSMR 127.28 2.19E-06 239010000 16962 59345 37676 18679 67238 61236 78953 176190 35565 32108 TRUE FALSE FALSE 20735.13838 66284.88152 51613.92023 19699.38647 60543.54863 64442.22227 62084.04656 132979.1262 42702.56928 24104.0665 0.860234035 2.74994601 2.14129513 0.817264028 2.511756621 2.67350002 2.575666913 5.516875181 1.771591913 1 14.55698894 -5.989072865 23.27196331 2.938372516 1.745404416 0.133772297 1.215724403 168.0383084 357871.7326 0.370717914 0.4198293 1.03E-06 5.989072865 -1.1929681 S(ph)KSLCHDEIENLLDSDHR ddPTM_HeLa_A485_30min_R1 3 SKSLCHDEIENLLDSDHR 18 1 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 S(0.5)KS(0.5)LCHDEIENLLDSDHR;S(0.5)KS(0.5)LCHDEIENLLDSDHR;S(0.5)KS(0.5)LCHDEIENLLDSDHR ;; 245.09 9.21E-46 1111440000 493440 474910 436873 487050 730040 516990 765090 673610 537370 826520 TRUE FALSE FALSE 603204.0257 530446.5933 598490.5025 513656.3082 657354.6543 544058.797 601622.2713 508406.0913 645215.23 620483.775 0.972151167 0.854891965 0.964554637 0.827831974 1.059422794 0.876830014 0.969601939 0.819370484 1.039858343 1 19.24303396 -7.799588717 24.99992013 1.019929456 0.919569833 0.241359606 0.07218763 254.2647739 166618.0278 0.063449319 0.016383892 1.59E-08 7.799588717 -0.100359624 S(ph)KSLCHDEIENLLDSDHR ddPTM_HeLa_A486_30min_R1 3 SKSLCHDEIENLLDSDHR 18 1 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 S(0.5)KS(0.5)LCHDEIENLLDSDHR;S(0.5)KS(0.5)LCHDEIENLLDSDHR;S(0.5)KS(0.5)LCHDEIENLLDSDHR ;; 248.58 4.85E-46 1036040000 411410 488900 339455 50599 538510 539530 631230 601410 481960 472640 TRUE FALSE FALSE 382572.2835 450157.7835 470901.0669 117797.0291 470965.0544 472968.2741 473289.5775 464482.0717 523736.6809 354287.8676 1.07983456 1.270598924 1.329148159 0.332489594 1.329328767 1.334982982 1.335889882 1.311030137 1.478280034 1 18.43456254 S(ph)KSLKEGLTVQER ddPTM_HeLa_A485_30min_R1 1 SKSLKEGLTVQER 13 2 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;Q6WCQ1-2;J3KSW8;Q6WCQ1-3 A0A494BZV2;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.528)KS(0.456)LKEGLT(0.016)VQER 96.447 0.00077742 1002700000 319440 275010 201380 440170 576120 510070 887740 1055900 343320 675610 TRUE FALSE FALSE 390498.3259 307170.0272 275878.8421 464215.3725 518759.4699 536776.4765 698067.0968 796938.8694 412221.1749 507192.8607 0.769920786 0.605627664 0.543932818 0.915264012 1.02280515 1.058328139 1.376334627 1.571273831 0.81275035 1 18.95217491 -5.747190117 1.445817483 1.216133636 0.634623354 0.537652399 0.20625681 0.289578785 1.261601158 0.078172625 0.109647908 1.79E-06 5.747190117 -0.581510282 S(ph)KSNPDFLK ddPTM_HeLa_A486_30min_R1 1 SKSNPDFLK 9 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.637)KS(0.363)NPDFLK 102.66 0.00072567 552580000 1062300 1122000 486030 482820 848450 1418000 1534700 1480000 995790 1654800 TRUE FALSE FALSE 987838.2557 1033088.634 674233.8323 1124029.36 742029.4895 1243061.577 1150701.828 1143036.308 1082105.879 1240427.309 0.796369322 0.832848992 0.543549652 0.906163023 0.598204735 1.002123678 0.927665667 0.921485927 0.872365411 1 20.24240576 -6.275842543 24.99323309 0.938754607 0.739664931 0.496729081 0.105208279 704.67165 1222784.886 0.035199416 0.031181051 5.30E-07 6.275842543 -0.199089677 S(ph)KSPAS(ph)VDR ddPTM_HeLa_A485_30min_R1 1 SKSPASVDR 9 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 2 0 S(0.865)KS(0.136)PAS(0.999)VDR 85.837 0.0047141 242520000 192180 189460 163460 249040 233990 199020 285480 273740 176630 321670 TRUE FALSE FALSE 234929.778 211615.6989 223930.6561 262644.4246 210693.134 209440.3795 224484.8658 206604.8358 212078.0209 241483.5889 0.972860222 0.876315032 0.927312109 1.087628463 0.872494628 0.867306886 0.929607129 0.855564706 0.878229539 1 17.88156562 S(ph)KSPASTSSVNGTPGSQLSTPR ddPTM_HeLa_A485_30min_R1 2 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2;Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 1 0 S(0.498)KS(0.498)PAS(0.003)T(0.001)SSVNGTPGSQLSTPR;S(0.598)KS(0.398)PAS(0.002)T(0.001)S(0.001)S(0.001)VNGTPGSQLSTPR ; 183.86 7.98E-20 2072960000 337240 410860 297710 339380 431720 459290 562050 520140 348820 579200 TRUE FALSE FALSE 412257.8745 458906.503 407845.3177 357919.47 388736.4409 483337.7142 441963.426 392574.8495 418824.9744 434816.0994 0.948120079 1.055403661 0.93797198 0.823151375 0.894024949 1.111591118 1.016437585 0.902852608 0.963223245 1 18.73004583 S(ph)KSPASTSSVNGTPGSQLSTPR ddPTM_HeLa_A486_30min_R1 1 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2;Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 1 0 S(0.598)KS(0.372)PAS(0.019)T(0.008)S(0.002)SVNGTPGSQLSTPR 196.3 3.85E-21 353380000 169410 134360 71940 53552 128230 137230 156950 167710 115210 160590 TRUE FALSE FALSE 157535.2338 123712.8243 99797.09462 124671.7624 112146.1977 120299.9579 117679.45 129526.0941 125196.4956 120377.2187 1.308679794 1.027709608 0.829036388 1.035675717 0.9316231 0.999358177 0.977589042 1.076001717 1.040034791 1 16.87720286 -4.278332047 4.436196512 0.985608439 1.326685426 0.687654191 0.064698558 0.1035622 4.979280857 0.016502053 0.1071799 5.27E-05 4.278332047 0.341076987 S(ph)KSPASVNGTPSSQLSTPK ddPTM_HeLa_A486_30min_R1 1 SKSPASVNGTPSSQLSTPK 19 1 Q8N568-2;Q8N568;G5E9L9 Q8N568-2 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 S(0.491)KS(0.491)PAS(0.017)VNGT(0.002)PSSQLSTPK 124 2.93E-06 98170000 121270 119500 55597 48007 103800 129590 151550 134290 86874 154700 TRUE FALSE FALSE 112769.5992 110030.3848 77125.64734 111762.7221 90780.4361 113602.5034 113630.5871 103715.0985 94404.30827 115962.1131 0.972469337 0.948847704 0.665093497 0.963786526 0.782845653 0.979651891 0.979894071 0.894387794 0.814096137 1 16.823294 -6.281023729 24.84352966 0.929898215 0.865380869 0.100634239 0.099802711 2069.283739 2624960.839 0.035402723 0.03127017 5.24E-07 6.281023729 -0.064517346 S(ph)KSPIPGQGYLGTERPSSVSSVHSEGDYHR ddPTM_HeLa_A486_30min_R1 1 SKSPIPGQGYLGTERPSSVSSVHSEGDYHR 30 2 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KRE4 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.545)KS(0.455)PIPGQGYLGTERPSSVSSVHSEGDYHR 86.146 0.00034466 519420000 76683 70110 60061 13682 102390 69869 92252 73757 82156 44083 TRUE FALSE FALSE 71307.91769 64554.22826 83318.22769 31852.38745 89547.29145 61249.27316 69169.57386 56964.1412 89277.34823 33044.32987 2.157947157 1.953564455 2.521407698 0.963928988 2.709913979 1.853548654 2.093235788 1.723870371 2.701744856 1 15.01211512 -10.482625 6.054808236 0.999222882 2.054616346 0.299297857 0.492735699 0.00477023 0.000407608 0.440285772 0.106718972 3.29E-11 10.482625 1.055393464 S(ph)KSPLPPEEEAK ddPTM_HeLa_A485_30min_R1 4 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.5)KS(0.5)PLPPEEEAK;S(0.606)KS(0.394)PLPPEEEAK;S(0.697)KS(0.303)PLPPEEEAK;S(0.5)KS(0.5)PLPPEEEAK ;;; 123.03 2.34E-05 3278250000 4229400 5272380 1078987 3209150 1329070 3815050 4696130 5142840 1351730 3223020 TRUE FALSE FALSE 5170215.439 5888938.977 1478149.192 3384457.739 1196743.124 4014800.119 3692763.462 3881550.426 1623009.812 2419580.429 2.136823135 2.433867833 0.610911369 1.398778771 0.494607705 1.659295996 1.526199922 1.604224592 0.670781509 1 21.20632547 -4.748338536 24.99970771 1.163482368 2.285346109 0.560084283 0.411502261 169.6812335 323788.9102 0.10423939 0.27218231 1.79E-05 4.748338536 1.121863741 S(ph)KSPLPPEEEAK ddPTM_HeLa_A486_30min_R1 3 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.581)KS(0.419)PLPPEEEAK;S(0.6)KS(0.4)PLPPEEEAK;S(0.607)KS(0.393)PLPPEEEAK ;; 124.92 2.10E-05 2087660000 7694800 3665550 783560 1084470 1277290 3069330 3677950 2949610 2256690 10229400 TRUE FALSE FALSE 7155434.256 3375078.468 1086975.416 2524700.966 1117080.378 2690667.271 2757688.009 2278048.193 2452301.706 7667891.658 0.933168409 0.440157297 0.141756752 0.329256213 0.145682859 0.350900533 0.359640972 0.297089251 0.31981434 1 22.87039852 -10.10663363 5.39034189 1.000009887 0.353437758 0.449703172 0.208929224 2.52E-05 4.18E-06 0.205729183 0.049895894 7.82E-11 10.10663363 -0.646572129 S(ph)KSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_A485_30min_R1 8 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.559)KS(0.44)PLPPEEEAKDEEEDQT(0.001)LVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.491)KS(0.491)PLPPEEEAKDEEEDQT(0.019)LVNLDTYTSDLHFQVSK;S(0.549)KS(0.45)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.549)KS(0.451)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ;;;;;;; 229.34 2.62E-40 21613210000 435921.8 258800 155983.5 769132 400156 440376.7 811285 749167 297696.2 1063879 TRUE FALSE FALSE 532891.1005 289064.4087 213688.2877 811147.7336 360315.0636 463434.1431 637947.3322 565432.6186 357441.0967 798673.5445 0.667220173 0.361930617 0.267553983 1.015618633 0.451141854 0.580254781 0.798758562 0.707964628 0.447543429 1 19.6072464 -14 0.124476733 2.286201271 0.41208542 0.253144491 0.21036466 212.6040517 1.692754638 69.24429655 1.838474354 1.00E-14 14 -1.874115851 S(ph)KSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_A486_30min_R1 9 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.598)KS(0.402)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.495)KS(0.495)PLPPEEEAKDEEEDQT(0.003)LVNLDT(0.002)Y(0.001)T(0.002)S(0.002)DLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.5)KS(0.5)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ;;;;;;;; 280.87 2.82E-79 15717162000 1001621 723157.8 277707.1 389239.3 624376.3 1084988 1421805 1328010 678255.4 1659510 TRUE FALSE FALSE 931412.5403 665852.1422 385242.7264 906168.7615 546061.2024 951133.2119 1066054.351 1025651.113 737047.1242 1243957.894 0.74874925 0.535269035 0.30969113 0.728456136 0.438970808 0.764602416 0.85698588 0.824506294 0.592501665 1 20.24650622 -6.379520758 5.816855317 0.804350615 0.548304277 0.418255645 0.15113919 0.240699977 10.59312595 0.052797597 0.046332692 4.17E-07 6.379520758 -0.256046337 S(ph)KSPPKSPEEEGAVSS(ph) ddPTM_HeLa_A485_30min_R1 1 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.526)KS(0.474)PPKS(0.046)PEEEGAVS(0.249)S(0.705) 133.94 0.00026767 586080000 997540 560340 263420 2890400 750120 784200 1852500 1272900 445400 3682900 TRUE FALSE FALSE 1219439.332 625866.8887 360870.0198 3048295.233 675435.419 825259.4994 1456698.241 960719.2792 534787.6945 2764820.809 0.441055466 0.226367975 0.130522028 1.10252904 0.244296273 0.298485709 0.526868952 0.347479763 0.193425806 1 21.39875455 -10.18305314 4.26560437 1.000193625 0.394401258 0.325498051 0.263317442 260515817.9 400571312.8 649894.7424 0.065593514 6.56E-11 10.18305314 -0.605792366 S(ph)KSPPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A485_30min_R1 2 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR;S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR ; 163.62 3.86E-14 8470000000 1701650 1060400 730309 2840700 1706880 1581000 2778490 2375380 1327160 3954160 TRUE FALSE FALSE 2080176.172 1184404.556 1000480.69 2995880.248 1536937.034 1663778.715 2184842.913 1792814.331 1593508.839 2968460.683 0.700759213 0.398996208 0.337036867 1.009236964 0.517755564 0.560485347 0.736018815 0.603954211 0.536813187 1 21.50128357 -14 0.300017841 4.305173201 0.578602934 0.306030612 0.179043312 345.7179837 3.205660906 718.9982602 0.183154203 1.00E-14 14 -3.726570267 S(ph)KSPPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A486_30min_R1 3 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(0.555)KS(0.444)PPKVPIVIQDDS(0.001)LPAGPPPQIR;S(0.601)KS(0.399)PPKVPIVIQDDSLPAGPPPQIR;S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR ;; 200.48 1.07E-28 9493694000 1209226 1094377 493053 735352 932074 1492065 1785007 1668278 971631 2093913 TRUE FALSE FALSE 1124465.502 1007654.581 683976.326 1711936.619 815164.5877 1307989.191 1338379.369 1288447.518 1055852.757 1569583.556 0.716410093 0.641988493 0.435769299 1.090694798 0.519350872 0.833335177 0.852697114 0.820884949 0.672696113 1 20.5819504 -14 0.039286635 2.246135868 0.00043389 0.205872331 0.171667815 1360.116729 3.984888253 203.1390177 62.28241892 1.00E-14 14 -2.245701978 S(ph)KSPRDPDANWDSPSR ddPTM_HeLa_A486_30min_R1 1 SKSPRDPDANWDSPSR 16 2 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.601)KS(0.399)PRDPDANWDSPSR 90.729 0.00072135 322340000 275230 314150 193120 143140 306370 332090 412680 406050 310960 400730 TRUE FALSE FALSE 255937.7983 289255.6099 267901.2359 333237.1539 267942.2178 291120.1122 309423.0991 313601.279 337914.2632 300384.5997 0.852033688 0.962950864 0.891860755 1.109368304 0.891997187 0.969157915 1.030089756 1.043999191 1.124938707 1 18.19645132 -1.543093456 0.280813275 1.053912978 3.60E-18 0.391220898 0.068226102 41.12934103 0.764706221 0.076159326 20.08175446 0.028635617 1.543093456 -1.053912978 S(ph)KSPS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.5)KS(0.5)PS(1)PPR 85.958 0.0051233 1872600000 646630 492120 382600 1073500 655690 519200 840050 656680 475040 1260700 TRUE FALSE FALSE 790470.6127 549669.1531 524139.6613 1132142.587 590407.2013 546384.5092 660566.4549 495628.2004 570376.1707 946430.6915 0.835212361 0.5807812 0.553806703 1.19622345 0.623825079 0.577310641 0.697955446 0.523681454 0.602660264 1 19.85213733 -10.28104328 5.615844645 1.000028788 0.686116287 0.195625932 0.189802338 6.97E-05 8.93E-06 0.187313483 0.045426033 5.24E-11 10.28104328 -0.313912501 S(ph)KSPS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.629)KS(0.371)PS(1)PPR 74.944 0.014343 1953000000 1061100 1059000 500210 617870 767990 1204300 1407800 1209900 820070 1712100 TRUE FALSE FALSE 986722.3695 975080.9832 693904.7081 1438432.585 671661.533 1055725.71 1055553.55 934432.1819 891154.3279 1283379.016 0.768847205 0.759776318 0.540685721 1.120816662 0.523353993 0.822614128 0.822479982 0.728103055 0.694381252 1 20.29151587 -10.8599718 2.709392514 1.102377871 0.754735435 0.181200665 0.157207958 112243810.7 67833165.61 73930374.68 0.036336584 1.38E-11 10.8599718 -0.347642436 S(ph)KSPSPPR ddPTM_HeLa_A485_30min_R1 1 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.635)KS(0.363)PS(0.003)PPR 66.056 0.010479 107730000 105860 106090 76811 111010 113650 124130 154590 183150 101950 160360 TRUE FALSE FALSE 129408.1918 118496.3026 105226.5853 117074.1952 102334.607 130629.2549 121560.5836 138232.1753 122410.4299 120385.2032 1.074950977 0.984309529 0.874082383 0.972496553 0.850059677 1.085093943 1.009763496 1.148248885 1.016822887 1 16.87729855 -6.289949406 24.98494289 1.05861251 0.949921415 0.337813907 0.070251318 796.9959178 698449.874 0.024627969 0.021723768 5.13E-07 6.289949406 -0.108691095 S(ph)KSPSPPR ddPTM_HeLa_A486_30min_R1 1 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.492)KS(0.492)PS(0.015)PPR 43.308 0.034157 112210000 22156 20917 18628 9287 25545 23016 20501 21297 21642 23776 TRUE FALSE FALSE 20602.97881 19259.46074 25841.26048 21620.60534 22340.9079 20176.51993 15371.43296 16448.13801 23517.94599 17822.33484 1.156020184 1.08063623 1.449936874 1.213118569 1.253534293 1.132091845 0.862481437 0.92289468 1.319577159 1 14.12139873 -6.525919455 24.39106636 1.016594808 1.229452831 0.314579186 0.141986975 83.84648247 672553.8595 0.05476926 0.042680069 2.98E-07 6.525919455 0.212858023 S(ph)KSPT(ph)LR ddPTM_HeLa_A485_30min_R1 1 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.987)KS(0.061)PT(0.952)LR 127.83 0.0014877 1431300000 1102200 1054600 638970 2002000 1316000 1208500 2156800 2159500 852450 2674000 TRUE FALSE FALSE 1347380.587 1177926.296 875351.5928 2111364.191 1184974.419 1271775.191 1695982.061 1629879.239 1023528.896 2007421.011 0.671199803 0.586785876 0.436057801 1.051779462 0.59029691 0.633536854 0.844856187 0.81192696 0.509872563 1 20.93691179 -14 0.173929115 2.176025335 0.620786371 0.223230684 0.17210272 208.7231909 1.984719143 85.57404471 0.587871987 1.00E-14 14 -1.555238964 S(ph)KSPT(ph)LR ddPTM_HeLa_A486_30min_R1 2 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.989)KS(0.417)PT(0.593)LR;S(0.736)KS(0.337)PT(0.927)LR ; 115 0.002206 1758860000 1720650 1430420 660390 1172480 1222160 1851280 2568050 2147060 1151020 3247170 TRUE FALSE FALSE 1600041.32 1317068.31 916110.6939 2729592.694 1068865.297 1622887.896 1925496.728 1658221.308 1250791.34 2434057.496 0.657355598 0.541099917 0.376371838 1.121416687 0.439129026 0.666741808 0.791064603 0.681258068 0.51387091 1 21.21493182 -11.23371523 2.383931088 2.27515626 0.646529626 0.22569235 0.19820542 12135537.22 2344406.91 83444352.6 0.050212189 5.84E-12 11.23371523 -1.628626634 S(ph)KSPTLR ddPTM_HeLa_A485_30min_R1 1 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.49)KS(0.49)PT(0.021)LR 91.867 0.0031038 175380000 558870 664540 478970 766010 707770 711780 847300 1084500 681340 1261400 TRUE FALSE FALSE 683188.7034 742252.1723 656160.9346 807855.1867 637301.9337 749047.7002 666267.4332 818524.6746 818078.6884 946956.1943 0.721457558 0.78382947 0.692915827 0.853107241 0.673000438 0.79100565 0.703588442 0.864374381 0.863903413 1 19.85293816 -7.870220727 1.189711239 0.995224709 0.747187994 0.675133757 0.055311071 0.241048485 0.74808574 0.047875641 0.015331336 1.35E-08 7.870220727 -0.248036716 S(ph)KSPVGNPQLIQFSR ddPTM_HeLa_A486_30min_R1 1 SKSPVGNPQLIQFSR 15 1 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.715)KS(0.285)PVGNPQLIQFSR 159.74 4.97E-10 1640500000 372860 311260 198220 144100 291520 369690 444560 401230 267050 444710 TRUE FALSE FALSE 346724.4395 286594.624 274976.0925 335472.0824 254954.8433 324081.4065 333326.3859 309878.6878 290198.109 333351.7214 1.040115941 0.859736445 0.824882773 1.006360732 0.764822339 0.972190589 0.999923998 0.929584784 0.870546304 1 18.34668565 S(ph)KSQSSGSSATHPISVPGAR ddPTM_HeLa_A485_30min_R1 1 SKSQSSGSSATHPISVPGAR 20 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.397)KS(0.397)QS(0.088)S(0.088)GS(0.03)S(0.002)ATHPISVPGAR 108.77 1.48E-05 1279600000 376830 532160 490520 191640 753620 540080 710300 745850 497840 443280 TRUE FALSE FALSE 460654.5335 594391.4828 671983.7602 202108.8079 678586.9467 568357.7537 558538.6024 562929.1181 597751.9215 332778.454 1.384267905 1.786147738 2.019312706 0.607337421 2.039155296 1.707916324 1.678409752 1.691603261 1.796245864 1 18.3442025 -9.829164526 6.280976008 0.999999973 1.637090332 0.195649537 0.385915053 1.48E-07 2.75E-08 0.362397065 0.087894196 1.48E-10 9.829164526 0.63709036 S(ph)KSQSSGSSATHPISVPGAR ddPTM_HeLa_A486_30min_R1 1 SKSQSSGSSATHPISVPGAR 20 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.526)KS(0.438)QS(0.023)S(0.009)GS(0.004)S(0.001)ATHPISVPGAR 72.654 0.00023879 0 152100 150020 123650 15184 167200 105210 125120 126320 132430 91091 TRUE FALSE FALSE 141438.5754 138131.8688 171530.5915 35349.11936 146228.2169 92230.2599 93813.65262 97559.69355 143909.139 68281.2207 2.07141252 2.02298476 2.51211958 0.517698995 2.141558329 1.350741228 1.373930514 1.428792464 2.107594703 1 16.05920123 -5.217793499 24.99995986 1.460664279 2.184253562 0.373103201 0.463723087 514.8136985 294879.825 0.119087713 0.206264495 6.06E-06 5.217793499 0.723589282 S(ph)KSTEDGAELEEQKLQEETITFFDAR ddPTM_HeLa_A486_30min_R1 3 SKSTEDGAELEEQKLQEETITFFDAR 26 2 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 S(0.464)KS(0.464)T(0.072)EDGAELEEQKLQEETITFFDAR;S(0.454)KS(0.454)T(0.093)EDGAELEEQKLQEETITFFDAR;S(0.333)KS(0.333)T(0.333)EDGAELEEQKLQEETITFFDAR ;; 150.16 1.82E-09 91401000 29908 31234.8 9983.3 32387.1 30712.2 53202 81461 80021 27388.2 91571 TRUE FALSE FALSE 27811.60365 28759.64069 13849.10112 75398.80555 26859.9895 46638.47816 61078.59619 61801.96515 29762.23123 68641.02557 0.405174652 0.418986174 0.201761279 1.098451035 0.391311017 0.679454856 0.889826393 0.900364827 0.433592461 1 16.06678349 -5.242597912 24.99934281 0.751664973 0.349675238 0.439063935 0.221163591 809.9162556 1074616.351 0.058298251 0.100762699 5.72E-06 5.242597912 -0.401989736 S(ph)KSVPGLNVDMEEEEEEEDIDHLVK ddPTM_HeLa_A485_30min_R1 1 SKSVPGLNVDMEEEEEEEDIDHLVK 25 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 S(0.5)KS(0.5)VPGLNVDMEEEEEEEDIDHLVK 97.257 0.0011515 35659000 11698 9336.9 6858.9 16639 10388 10522 17838 20478 8802.6 20180 TRUE FALSE FALSE 14300.17974 10428.76923 9396.292533 17547.94644 9353.734246 11072.91565 14026.76558 15455.73839 10569.20108 15149.49739 0.94393757 0.688390444 0.620237906 1.158318721 0.617428685 0.73090977 0.925889831 1.020214598 0.69766018 1 13.88698231 -9.55029814 0.229324132 1.098482123 0.773941697 0.079838101 0.174405238 31.15727827 2.066827778 2.609404113 0.393133114 2.82E-10 9.55029814 -0.324540426 S(ph)KTFDWAEFR ddPTM_HeLa_A486_30min_R1 1 SKTFDWAEFR 10 1 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.556)KT(0.444)FDWAEFR 84.468 0.0023315 42055000 175240 199300 94667 80234 159940 229790 229120 210980 169130 216480 TRUE FALSE FALSE 162956.5809 183506.7422 131324.5977 186788.8068 139878.8338 201440.8461 171791.7526 162944.4597 183790.3246 162271.999 1.004218731 1.130858949 0.809286867 1.151084648 0.862002285 1.241377733 1.058665412 1.004144034 1.132606523 1 17.30805455 -6.253552269 24.96221827 1.085824411 0.997976953 0.142979404 0.116787051 1308.460936 4141202.229 0.036923717 0.036292931 5.58E-07 6.253552269 -0.087847459 S(ph)KTFDWAEFRPIQQALAQER ddPTM_HeLa_A486_30min_R1 1 SKTFDWAEFRPIQQALAQER 20 2 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.5)KT(0.5)FDWAEFRPIQQALAQER 133.15 1.55E-07 17233000 23183 22476 16241 12840 25505 32746 28931 32961 20268 32806 TRUE FALSE FALSE 21557.99142 20694.9199 22529.95015 29892.1689 22305.92508 28706.13146 21692.1578 25456.49983 22024.84656 24591.16407 0.876655995 0.841559181 0.91618071 1.215565429 0.907070727 1.167335201 0.882111873 1.03518889 0.895640666 1 14.58585241 -5.011545197 24.66841533 1.016622739 0.864048125 0.275880874 0.104071921 553.459133 1182575.357 0.026255472 0.049138316 9.74E-06 5.011545197 -0.152574614 S(ph)KTPPKSYSTAR ddPTM_HeLa_A486_30min_R1 1 SKTPPKSYSTAR 12 2 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 S(0.744)KT(0.252)PPKS(0.002)YS(0.001)T(0.001)AR 53.169 0.020196 253080000 241360 209200 118670 116560 210950 228640 310190 310360 167150 336670 TRUE FALSE FALSE 224441.9104 192622.2301 164622.2021 271357.5706 184490.684 200432.7214 232577.1811 239697.8031 181638.6966 252365.6406 0.889352092 0.763266464 0.652316225 1.075255609 0.731045175 0.794215571 0.921588139 0.949803636 0.719744162 1 17.94515598 -14 0.167265556 1.617817907 0.795263788 0.134376442 0.1215586 268.4574629 2.513938076 55.30431015 0.454817639 1.00E-14 14 -0.822554119 S(ph)KTPPPPPQTAQTK ddPTM_HeLa_A485_30min_R1 4 SKTPPPPPQTAQTK 14 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.5)KT(0.5)PPPPPQTAQTK;S(0.5)KT(0.5)PPPPPQTAQTK;S(0.591)KT(0.409)PPPPPQTAQTK;S(0.5)KT(0.5)PPPPPQTAQTK ;;; 101.5 0.00028724 1634600000 1632880 1025670 783780 2469260 1618970 1497280 2421730 1944080 1324990 3554480 TRUE FALSE FALSE 1996108.523 1145613.184 1073732.838 2604149.421 1457779.662 1575675.266 1904307.602 1467291.332 1590903.339 2668413.551 0.748050662 0.429323702 0.402386218 0.975916728 0.546309496 0.590491404 0.713647853 0.549874037 0.596198194 1 21.34755084 -11.10079838 2.148320204 1.636095117 0.613663052 0.34793952 0.157273999 11161999.03 2945062.763 34687141.12 0.039005376 7.93E-12 11.10079838 -1.022432065 S(ph)KTPPPPPQTAQTK ddPTM_HeLa_A486_30min_R1 3 SKTPPPPPQTAQTK 14 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.5)KT(0.5)PPPPPQTAQTK;S(0.618)KT(0.382)PPPPPQTAQTK;S(0.5)KT(0.5)PPPPPQTAQTK ;; 152.04 2.26E-08 1360150000 1837030 1806000 735584 938269 1561600 2309980 2795140 2579970 1551790 2867830 TRUE FALSE FALSE 1708263.683 1662885.983 1020421.824 2184337.649 1365729.567 2024998.154 2095766.408 1992567.151 1686300.407 2149706.702 0.794649653 0.773540866 0.474679557 1.016109615 0.635309722 0.94198811 0.974908068 0.926901865 0.784432781 1 21.03570841 -6.280243205 24.38712249 0.924156422 0.741511014 0.314625261 0.137807095 768.1719658 996256.504 0.04725076 0.041746005 5.25E-07 6.280243205 -0.182645408 S(ph)KTSPVVSGSSSK ddPTM_HeLa_A485_30min_R1 2 SKTSPVVSGSSSK 13 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.382)KT(0.382)S(0.236)PVVSGSSSK;S(0.383)KT(0.383)S(0.234)PVVSGSSSK ; 117.4 7.69E-05 572700000 1021890 897720 601480 1188190 1247160 1114250 1576670 1727350 900590 1620550 TRUE FALSE FALSE 1249205.905 1002700.545 823992.4817 1253097.811 1122988.371 1172590.407 1239801.574 1303714.704 1081330.152 1216576.709 1.0268205 0.824198374 0.677304173 1.030019564 0.923072391 0.963844202 1.019090342 1.071625566 0.888830227 1 20.21439586 -5.302110821 24.99768607 0.98612832 0.840916483 0.331041054 0.092770424 560.103213 344252.2385 0.026338541 0.039066802 4.99E-06 5.302110821 -0.145211837 S(ph)KTSPVVSGSSSK ddPTM_HeLa_A486_30min_R1 1 SKTSPVVSGSSSK 13 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.472)KT(0.315)S(0.213)PVVSGSSSK 95.767 0.00055993 659950000 721910 616990 275740 318910 575540 750390 913990 907720 500360 899670 TRUE FALSE FALSE 671307.8369 568097.4654 382513.9126 742438.5968 503350.4065 657814.5112 685300.0348 701051.9714 543731.6077 674386.7761 0.995434461 0.84239117 0.56720257 1.100909186 0.746382379 0.975426172 1.016182492 1.039539914 0.806260779 1 19.36321672 -6.302589805 22.96931341 0.972997032 0.848192336 0.13969353 0.144820304 388.860556 217051.9013 0.050226087 0.044296184 4.98E-07 6.302589805 -0.124804696 S(ph)LAALSQIAYQR ddPTM_HeLa_A485_30min_R1 2 SLAALSQIAYQR 12 0 E7EX44;Q05682-3;Q05682-5;E9PGZ1 E7EX44;Q05682-5 CALD1 Caldesmon 1 0 S(1)LAALSQIAYQR;S(1)LAALSQIAYQR ; 153.09 9.08E-08 117393000 21859 35556 24773 25911.9 48739 37435 30760 43633 41277 32733 TRUE FALSE FALSE 26721.45914 39713.9649 33937.56359 27327.40148 43886.37403 39395.03871 24187.87471 32931.93834 49560.91528 24573.26551 1.08741995 1.616145192 1.381076666 1.11207855 1.785939847 1.603166608 0.984316663 1.340153116 2.016863216 1 14.58480197 -4.23815505 22.96963677 1.428935956 1.087418777 0.091260539 0.321054168 5336.075222 5263708.949 0.078422411 3.678526399 5.78E-05 4.23815505 -0.341517178 S(ph)LAALSQIAYQR ddPTM_HeLa_A486_30min_R1 1 SLAALSQIAYQR 12 0 E7EX44;Q05682-3;Q05682-5;E9PGZ1 E7EX44;Q05682-5 CALD1 Caldesmon 1 0 S(1)LAALSQIAYQR 106.42 0.00053696 61394000 21990 23247 18468 6805.1 24801 21503 15558 18327 16672 11305 TRUE FALSE FALSE 20448.61456 21404.82306 25619.30419 15842.61671 21690.22732 18850.17849 11665.22384 14154.34218 18117.14238 8474.154417 2.413056637 2.525894857 3.023228387 1.869521834 2.559574236 2.224431791 1.376564937 1.670295522 2.137929225 1 13.0488537 -7.088862705 0.262371743 0.893513913 2.920932381 0.607997675 0.361136828 1.374458942 0.342655447 0.827728166 1.056512398 8.15E-08 7.088862705 2.027418468 S(ph)LAEQR ddPTM_HeLa_A486_30min_R1 1 SLAEQR 6 0 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 S(1)LAEQR 92.439 0.012746 0 165950 139480 134090 80610 179050 194820 210420 203930 132140 196010 TRUE FALSE FALSE 154317.762 128427.0968 186013.2391 187664.1538 156591.8794 170785.0892 157770.6904 157499.5908 143594.0016 146927.8202 1.050296409 0.874082911 1.266017823 1.277254053 1.065774196 1.162374076 1.073797258 1.071952136 0.977309821 1 17.16474806 -7.518563766 1.868989202 0.987394869 1.115349197 0.160256968 0.108735042 0.729528339 4.58099895 0.10229238 0.033413713 3.03E-08 7.518563766 0.127954328 S(ph)LAGSSGPGASSGTSGDHGELVVR ddPTM_HeLa_A486_30min_R1 1 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;E9PQ49;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7 P29692-2 EEF1D Elongation factor 1-delta 1 0 S(0.959)LAGS(0.02)S(0.02)GPGASSGTSGDHGELVVR 61.524 0.00064683 0 28217 33489 28998 19174 37407 29815 36348 37122 21623 37550 TRUE FALSE FALSE 26239.13401 30835.20968 40226.80219 44638.041 32715.06525 26136.72844 27253.34595 28670.13097 23497.29905 28147.23559 0.932209983 1.095496912 1.429156411 1.585876555 1.16228342 0.928571772 0.968242365 1.018577149 0.83479953 1 14.78070562 -6.126907632 4.469225323 0.953736436 1.272164824 0.424222747 0.171357958 0.247173726 7.875878392 0.063533142 0.063925315 7.47E-07 6.126907632 0.318428388 S(ph)LAIPDDDRFEDLEEANPFSFR ddPTM_HeLa_A486_30min_R1 3 SLAIPDDDRFEDLEEANPFSFR 22 1 Q96C92-4 Q96C92-4 SDCCAG3 Serologically defined colon cancer antigen 3 1 0 S(1)LAIPDDDRFEDLEEANPFSFR;S(1)LAIPDDDRFEDLEEANPFSFR;S(1)LAIPDDDRFEDLEEANPFSFR ;; 155.95 2.49E-10 71643000 24991.5 28918.4 25179.6 11207.2 29710.8 37347.9 38191.7 41022.6 28468.4 33045.3 TRUE FALSE FALSE 23239.72491 26626.80066 34929.81545 26090.92798 25984.19442 32740.29582 28635.73271 31682.6495 30936.06383 24770.54179 0.938200105 1.074938162 1.410135303 1.053304696 1.048995805 1.321743226 1.156039821 1.279045479 1.248905417 1 14.5963378 -6.247433057 24.90074401 1.215767954 1.117505582 0.098196547 0.139594449 1906.218289 3388916.668 0.046711733 0.046495993 5.66E-07 6.247433057 -0.098262372 S(ph)LCHDEIENLLDSDHR ddPTM_HeLa_A485_30min_R1 2 SLCHDEIENLLDSDHR 16 0 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 S(1)LCHDEIENLLDSDHR;S(1)LCHDEIENLLDSDHR ; 238.63 1.53E-41 156963000 124200 135020 163631 133514 196421 118331 154159 124773 172295 224341 TRUE FALSE FALSE 151827.8615 150809.4145 224164.9162 140807.5317 176864.6356 124526.6282 121221.6703 94172.22611 206873.0261 168416.9174 0.901500062 0.895452885 1.33101187 0.836065248 1.050159558 0.739395009 0.71977134 0.559161322 1.228338752 1 17.36167754 -6.255938442 24.82366042 0.813683245 1.00583883 0.105466469 0.211037739 781.7454792 3527725.212 0.069317918 0.067470461 5.55E-07 6.255938442 0.192155585 S(ph)LCHDEIENLLDSDHR ddPTM_HeLa_A486_30min_R1 3 SLCHDEIENLLDSDHR 16 0 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 S(1)LCHDEIENLLDSDHR;S(1)LCHDEIENLLDSDHR;S(1)LCHDEIENLLDSDHR ;; 264.71 4.78E-51 238550000 117951 213340 169975 34282 214037 184071 204817 190941 180690 146196 TRUE FALSE FALSE 109683.244 196434.1614 235793.8721 79810.22852 187190.4836 161362.1915 153569.6203 147467.9025 196352.3547 109587.57 1.000873037 1.792485785 2.151647966 0.728278111 1.708136092 1.472449763 1.401341596 1.345662674 1.791739288 1 16.74172464 -10.53294069 2.905060911 0.978312962 1.493466028 0.123720913 0.389435655 184235744 198966969.6 31382163.6 0.09482251 2.93E-11 10.53294069 0.515153066 S(ph)LDDLSAPPHHR ddPTM_HeLa_A485_30min_R1 1 SLDDLSAPPHHR 12 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 0 S(0.999)LDDLS(0.001)APPHHR 56.65 0.027445 411820000 156890 226020 213240 161180 248980 216860 242840 259350 188390 177550 TRUE FALSE FALSE 191789.6392 252451.0729 292126.3497 169984.8553 224190.677 228214.4543 190955.2502 195744.0059 226198.145 133290.0526 1.438889366 1.893997849 2.191659048 1.275300384 1.681976056 1.712164185 1.432629416 1.468556746 1.697036955 1 17.02420959 -11.53508527 0.176309055 3.71E-10 1.839404451 0.394061152 0.245859143 49.3376138 1.049946284 20.27961304 0.930667205 2.92E-12 11.53508527 1.83940445 S(ph)LDDLSAPPHHR ddPTM_HeLa_A486_30min_R1 3 SLDDLSAPPHHR 12 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 0 S(1)LDDLSAPPHHR;S(1)LDDLSAPPHHR;S(1)LDDLSAPPHHR ;; 123.1 0.00020819 290130000 545360 636370 562180 152045 719910 561490 664940 671810 471810 570830 TRUE FALSE FALSE 507133.0802 585941.7236 779871.1517 353968.4439 629612.1749 492219.0726 498564.979 518853.5285 512706.8707 427890.4525 1.185193727 1.369373213 1.822595356 0.827240809 1.4714331 1.150338994 1.165169674 1.212584963 1.198219936 1 18.70688196 -6.926430132 0.260486372 0.983576759 1.446282803 0.15071707 0.23618436 4.202752537 0.945622566 0.502421364 0.726193456 1.18E-07 6.926430132 0.462706044 S(ph)LDFFR ddPTM_HeLa_A485_30min_R1 3 SLDFFR 6 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 0 S(1)LDFFR;S(1)LDFFR;S(1)LDFFR ;; 103.74 0.010749 56065000 97892 111427 97065 124195 129398 93008 118475 118671 92951 160111 TRUE FALSE FALSE 119667.7377 124457.4184 132973.3827 130979.4584 116514.6808 97877.75506 93161.8484 89566.75118 111605.4131 120198.2743 0.995586154 1.035434319 1.106283626 1.089694999 0.969354023 0.814302498 0.775068102 0.745158378 0.928510944 1 16.87505666 -6.072555657 3.370868795 0.832388343 1.057656835 0.614450441 0.075401767 0.151763813 3.350268856 0.025651415 0.026540492 8.46E-07 6.072555657 0.225268492 S(ph)LDFFR ddPTM_HeLa_A486_30min_R1 3 SLDFFR 6 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 0 S(1)LDFFR;S(1)LDFFR;S(1)LDFFR ;; 116.73 0.0073132 55334000 118997 136509 97889 63441.6 151153 157102 161992 146772 123715 153903 TRUE FALSE FALSE 110655.9248 125691.5297 135794.2424 147695.251 132193.9813 137720.3525 121459.8882 113355.2196 134438.7158 115364.6871 0.959183678 1.089514763 1.177086731 1.280246622 1.145879078 1.193782569 1.052834202 0.982581607 1.165336805 1 16.81584216 -6.785795362 20.58471253 1.048735912 1.146809303 0.196863817 0.089319529 53.98492885 45622.62002 0.039276529 0.026518074 1.64E-07 6.785795362 0.098073391 S(ph)LDGAAAVDSADR ddPTM_HeLa_A486_30min_R1 1 SLDGAAAVDSADR 13 0 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 0 S(1)LDGAAAVDSADR 71.726 0.0056817 0 390070 458000 308660 210950 439680 493510 643190 568470 343010 632200 TRUE FALSE FALSE 362728.1073 421706.412 428181.4182 491102.2608 384531.2345 432625.7538 482257.059 439041.7906 372742.383 473893.0051 0.765421949 0.889876845 0.903540279 1.036314644 0.811430493 0.912918632 1.017649667 0.926457631 0.786553882 1 18.85420184 -4.233349649 2.168636567 0.924428766 0.716141775 0.277875146 0.076941039 0.97628047 4.910495607 0.020252612 0.404532422 5.84E-05 4.233349649 -0.208286991 S(ph)LDGAPIGVMDQSLMK ddPTM_HeLa_A485_30min_R1 2 SLDGAPIGVMDQSLMK 16 0 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(1)LDGAPIGVMDQSLMK;S(1)LDGAPIGVMDQSLMK ; 254.59 1.71E-50 67855000 58636 59504 42875 73465 76394 70164 90567 85531 60858 111381 TRUE FALSE FALSE 71679.37591 66462.47518 58736.24668 77478.20693 68787.94512 73837.67855 71216.62059 64554.38814 73071.64238 83615.76652 0.85724713 0.794855778 0.702454204 0.926598059 0.822667159 0.88305928 0.851712823 0.772036074 0.873897895 1 16.35148738 -13.99999999 0.24823347 2.019990736 0.814185829 0.426359201 0.059492027 179.0390937 1.779234609 92.55999113 0.089093844 1.00E-14 13.99999999 -1.205804908 S(ph)LDGAPIGVMDQSLMK ddPTM_HeLa_A486_30min_R1 1 SLDGAPIGVMDQSLMK 16 0 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(1)LDGAPIGVMDQSLMK 129.38 1.71E-05 33941000 24754 29409 14970 12073 26321 29926 29427 34779 20439 35889 TRUE FALSE FALSE 23018.87243 27078.52373 20766.78491 28106.55414 23019.57475 26234.03439 22064.05335 26860.58092 22210.66898 26902.1608 0.855651433 1.006555716 0.771937431 1.04476939 0.855677539 0.975164582 0.820159151 0.998454404 0.825609108 1 14.71543444 -10.25707753 3.558311911 1.000203587 0.909842779 0.089343673 0.089277357 47973072.88 69136488.2 104152.3776 0.019808375 5.53E-11 10.25707753 -0.090360809 S(ph)LDNFFAK ddPTM_HeLa_A485_30min_R1 2 SLDNFFAK 8 0 Q9UKY7;Q9UKY7-2 Q9UKY7 CDV3 Protein CDV3 homolog 1 0 S(1)LDNFFAK;S(1)LDNFFAK ; 119.27 0.00080784 99342000 258690 225300 160741 240750 256070 210790 275020 254280 197539 360670 TRUE FALSE FALSE 316234.698 251646.8752 220205.7849 253901.5629 230574.7717 221826.6385 216259.7303 191917.4313 237183.2654 270761.6066 1.167945123 0.929403833 0.813282901 0.93773104 0.851578533 0.819269176 0.798708993 0.708805926 0.875985589 1 18.04666366 -4.269522103 2.241013825 0.839790276 1.249647123 0.611105116 0.075586072 0.38929105 2.301398938 0.019903472 0.314366244 5.38E-05 4.269522103 0.409856847 S(ph)LDNFFAK ddPTM_HeLa_A486_30min_R1 2 SLDNFFAK 8 0 Q9UKY7;Q9UKY7-2 Q9UKY7 CDV3 Protein CDV3 homolog 1 0 S(1)LDNFFAK;S(1)LDNFFAK ; 138.25 0.00044983 100357000 215967 201145 110130 75322 167660 215952 218280 210711 167244 289860 TRUE FALSE FALSE 200828.8286 185205.5376 152775.2854 175353.4226 146630.5194 189310.0379 163664.0353 162736.7051 181740.8446 217277.1693 0.924297887 0.852392997 0.703135474 0.807049462 0.674854702 0.871283617 0.753250034 0.748982075 0.836447037 1 17.72917706 -8.080308113 6.692484607 0.999997865 0.789059179 0.424263647 0.072596385 1.040087371 86.11351327 0.069894927 0.01810938 8.31E-09 8.080308113 -0.210938686 S(ph)LDQPFLSK ddPTM_HeLa_A486_30min_R1 1 SLDQPFLSK 9 0 G5E9Y3;Q8WWN8-2;Q8WWN8 G5E9Y3 ARAP3 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3" 1 0 S(1)LDQPFLSK 116.54 0.0010415 0 140650 169450 80793 68246 142450 215780 275300 313750 148690 239010 TRUE FALSE FALSE 130791.1613 156022.1649 112078.2133 158880.137 124582.5927 189159.2575 206417.0282 242315.9741 161578.5689 179160.3403 0.730022956 0.870852135 0.625574907 0.88680417 0.695369257 1.055809881 1.152135723 1.352509008 0.901865718 1 17.45089179 -6.369340457 4.392644659 1.127552575 0.767603629 0.612406808 0.130943289 0.145361736 4.667307793 0.045481862 0.039793863 4.27E-07 6.369340457 -0.359948946 S(ph)LDSESISPGDFHR ddPTM_HeLa_A485_30min_R1 2 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 S(0.931)LDS(0.069)ESISPGDFHR;S(0.862)LDS(0.138)ESISPGDFHR ; 120.32 6.06E-05 347410000 114632 129359 107762 103099 142560 104909 150775 150004 128027 170069 TRUE FALSE FALSE 140131.4929 144486.4098 147627.6482 108731.0373 128366.2258 110401.873 118560.6895 113215.2838 153720.8446 127673.9282 1.097573286 1.131682966 1.156286567 0.851630704 1.005422389 0.864717445 0.92862099 0.886753352 1.20401124 1 16.96210442 -5.245210606 24.80675746 0.954540937 1.128831161 0.381170787 0.09620585 732.0944339 1119052.742 0.025367377 0.043762192 5.69E-06 5.245210606 0.174290224 S(ph)LDSESISPGDFHR ddPTM_HeLa_A486_30min_R1 3 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 S(0.959)LDS(0.041)ESISPGDFHR;S(0.97)LDS(0.03)ESISPGDFHR;S(0.756)LDS(0.205)ES(0.039)ISPGDFHR ;; 139.34 2.80E-06 319312000 276176 276513 200713 54507 287279 267477 306347 307436 214840 241994 TRUE FALSE FALSE 256817.4886 254601.1028 278434.4489 126895.0506 251245.789 234478.4072 229695.7404 237439.5341 233462.5042 181397.1273 1.415774838 1.403556421 1.534944092 0.69954278 1.38505936 1.2926247 1.266258975 1.308948701 1.287024264 1 17.46879208 S(ph)LDYLNLDK ddPTM_HeLa_A486_30min_R1 1 SLDYLNLDK 9 0 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 S(1)LDYLNLDK 113.24 0.0007864 124560000 171410 164700 104620 81671 188030 216370 252670 231200 136370 258200 TRUE FALSE FALSE 159395.0442 151648.5722 145131.6658 190134.2154 164445.5241 189676.4693 189449.2935 178560.8071 148190.6614 193545.0394 0.823555306 0.783531175 0.74985991 0.982377105 0.849649904 0.980012042 0.97883828 0.922580127 0.765664994 1 17.56230981 -5.25556483 24.95485316 0.923685322 0.78543703 0.457891251 0.069755621 432.7212115 1838177.106 0.019038355 0.031873186 5.55E-06 5.25556483 -0.138248292 S(ph)LEDLRAPK ddPTM_HeLa_A485_30min_R1 5 SLEDLRAPK 9 1 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK ;;;; 138.45 7.52E-05 2350230000 3715977 3896980 2713400 5000450 5028280 5054100 7468640 8095490 3656212 7188800 TRUE FALSE FALSE 4542583.264 4352697.912 3717199.574 5273611.922 4527646.788 5318724.861 5872904.051 6110058.384 4389980.212 5396764.46 0.841723462 0.806538426 0.688782992 0.977180301 0.838955789 0.985539558 1.088226862 1.132170661 0.813446695 1 22.36366329 -5.900605084 1.265056731 1.018395943 0.793359206 0.427854282 0.100800543 0.403998642 1.357357931 0.04256695 0.053196394 1.26E-06 5.900605084 -0.225036736 S(ph)LEDLRAPK ddPTM_HeLa_A486_30min_R1 3 SLEDLRAPK 9 1 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 S(1)LEDLRAPK;S(1)LEDLRAPK;S(1)LEDLRAPK ;; 132.17 0.00010806 1788080000 4024830 3527850 1863550 1767440 3796630 3938300 5161900 5087200 2764790 6061300 TRUE FALSE FALSE 3742710.201 3248290.318 2585166.468 4114689.641 3320421.263 3452432.588 3870338.023 3928955.613 3004444.223 4543511.028 0.823748458 0.714929555 0.568979904 0.90561894 0.730805151 0.759860066 0.851838589 0.864739975 0.661260467 1 22.11537615 -14 0.195173025 2.016705217 0.726766338 0.331829178 0.097904381 161.4989141 1.589662552 64.07981175 0.249109995 1.00E-14 14 -1.28993888 S(ph)LEDVTAEYIHK ddPTM_HeLa_A485_30min_R1 1 SLEDVTAEYIHK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 S(1)LEDVTAEYIHK 266.2 6.77E-34 117430000 149970 116890 96857 176460 171490 132470 190710 165490 119170 228510 TRUE FALSE FALSE 183330.3091 130559.2687 132688.4349 186099.563 154415.8535 139405.9244 149963.2505 124903.318 143086.3259 171546.6624 1.068690621 0.761071459 0.773483045 1.084833481 0.900139072 0.812641426 0.874183435 0.728101126 0.834095656 1 17.38824153 -6.197171622 6.868206696 0.834423279 0.910653123 0.068595599 0.117197876 0.694825415 62.9302242 0.039120632 0.039041095 6.35E-07 6.197171622 0.076229844 S(ph)LEDVTAEYIHK ddPTM_HeLa_A486_30min_R1 2 SLEDVTAEYIHK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 S(1)LEDVTAEYIHK;S(1)LEDVTAEYIHK ; 306.05 1.01E-50 290790000 252170 253950 146397 114451 250570 269440 311870 298260 217736 354360 TRUE FALSE FALSE 234494.1852 233826.0771 203085.839 266447.712 219141.1741 236199.2323 233836.8274 230352.709 236609.5318 265625.9495 0.882798483 0.880283261 0.76455572 1.003093683 0.824999118 0.889217461 0.880323733 0.867207099 0.890762112 1 18.01903657 -14 0.316825696 2.159117776 0.869831303 0.308145524 0.05615831 378.4517975 3.387635315 293.5156775 0.048881681 1.00E-14 14 -1.289286473 S(ph)LEEDLETLK ddPTM_HeLa_A485_30min_R1 4 SLEEDLETLK 10 0 P48681 P48681 NES Nestin 1 0 S(1)LEEDLETLK;S(1)LEEDLETLK;S(1)LEEDLETLK;S(1)LEEDLETLK ;;; 251.34 6.18E-22 358597000 239851 181595 123918 313760 220909 209340 348786 294855 160579 388248 TRUE FALSE FALSE 293205.0275 202830.9556 169760.4249 330899.9143 198914.5243 220300.7187 274265.0218 222541.3489 192805.7324 291464.9188 1.005970217 0.695901779 0.582438619 1.135299286 0.68246472 0.755839569 0.940988106 0.763527048 0.661505794 1 18.15296272 -11.32386098 2.371206558 2.167277633 0.800831312 0.115134098 0.164054387 25174348.5 2444049.193 158608265.6 0.042324537 4.74E-12 11.32386098 -1.366446321 S(ph)LEEDLETLK ddPTM_HeLa_A486_30min_R1 4 SLEEDLETLK 10 0 P48681 P48681 NES Nestin 1 0 S(1)LEEDLETLK;S(1)LEEDLETLK;S(1)LEEDLETLK;S(1)LEEDLETLK ;;; 257.13 2.14E-26 368464000 387940 329915 152511 163392 253124 400692 496863 425229 259534 571540 TRUE FALSE FALSE 360747.4093 303771.3339 211567.3436 380384.8334 221374.8276 351258.695 372542.6221 328413.6394 282030.6161 428422.6639 0.842036241 0.709045901 0.493828552 0.887872807 0.516720627 0.819888219 0.869567961 0.76656458 0.658299945 1 18.70867528 S(ph)LEEEGQELPQSADVQR ddPTM_HeLa_A485_30min_R1 2 SLEEEGQELPQSADVQR 17 0 P48681 P48681 NES Nestin 1 0 S(1)LEEEGQELPQSADVQR;S(1)LEEEGQELPQSADVQR ; 294.22 2.30E-68 605570000 166476 178050 140004 169155 164142 136639 144980 156463 118908 222820 TRUE FALSE FALSE 203508.0119 198871.3987 191797.3057 178395.5093 147799.4461 143793.2068 114003.8386 118090.2039 142771.7449 167275.0747 1.216606911 1.188888416 1.146598236 1.066479926 0.883571246 0.859621238 0.681535123 0.705964138 0.853514758 1 17.35186296 -5.696089205 1.407532297 0.788688276 1.199415277 0.786121892 0.084687054 0.170861749 0.704352953 0.031342481 0.046526008 2.01E-06 5.696089205 0.410727002 S(ph)LEEEGQELPQSADVQR ddPTM_HeLa_A486_30min_R1 1 SLEEEGQELPQSADVQR 17 0 P48681 P48681 NES Nestin 1 0 S(1)LEEEGQELPQSADVQR 274.82 1.47E-56 0 104340 111060 51843 34738 71836 93962 103900 82855 81845 113530 TRUE FALSE FALSE 97026.30481 102259.2011 71917.998 80871.81956 62825.65904 82369.92378 77903.12106 63990.72521 88939.3905 85101.34904 1.140126519 1.201616687 0.845086462 0.950300089 0.73824516 0.967903855 0.915415818 0.751935497 1.045099655 1 16.37689438 -4.759471028 24.99999998 0.891634274 1.170871694 0.555105306 0.096031389 32.06136264 407181.2536 0.023208879 0.05540468 1.74E-05 4.759471028 0.279237419 S(ph)LEELLLDANQLR ddPTM_HeLa_A485_30min_R1 1 SLEELLLDANQLR 13 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JPP5;Q14160-3;Q5T0G3;Q9BTT6-2;Q9BTT6 A0A0G2JNZ2 SCRIB;LRRC1 Protein scribble homolog;Leucine-rich repeat-containing protein 1 1 0 S(1)LEELLLDANQLR 124.3 3.24E-05 4181500 3484.2 4119.2 3201.4 3442.2 4051.2 4466.3 5565.5 4126.5 4125.6 10117 TRUE FALSE FALSE 4259.24827 4600.904608 4385.731081 3630.23867 3647.848303 4700.148562 4376.385459 3114.469405 4953.570078 7595.01809 0.560795013 0.605779282 0.577448405 0.477976303 0.48029488 0.618846263 0.576217911 0.410067411 0.652213072 1 12.89083769 -8.021067507 23.55614975 1.000000003 0.541284979 0.835266353 0.061668341 291.7920646 326260.7924 0.060960629 0.015739967 9.53E-09 8.021067507 -0.458715024 S(ph)LEELLLDANQLR ddPTM_HeLa_A486_30min_R1 2 SLEELLLDANQLR 13 0 A0A0G2JNZ2;A0A669KB89;Q14160;A0A0G2JPP5;Q14160-3;Q5T0G3;Q9BTT6-2;Q9BTT6 A0A0G2JNZ2 SCRIB;LRRC1 Protein scribble homolog;Leucine-rich repeat-containing protein 1 1 0 S(1)LEELLLDANQLR;S(1)LEELLLDANQLR ; 106.32 0.00040648 16985400 7485 7434.6 6402.1 2898.93 10198 10859 9706.8 9430.7 8548.8 13264.1 TRUE FALSE FALSE 6960.340153 6845.45522 8881.164574 6748.855544 8918.871747 9519.326986 7278.055972 7283.535481 9289.816867 9942.683025 0.70004647 0.688491748 0.893236217 0.678776094 0.897028672 0.957420342 0.732001207 0.732552316 0.934337024 1 13.2794195 -14 0.029225931 2.173638322 1.23E-11 0.365025627 0.095174157 1900.886888 4.174928558 239.6047399 99.22013553 1.00E-14 14 -2.173638322 S(ph)LEEMSLR ddPTM_HeLa_A486_30min_R1 2 SLEEMSLR 8 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(1)LEEMSLR;S(1)LEEMSLR ; 195.79 2.73E-06 143803000 85606 94722 81213 26442 98134 86714 103777 109845 75075 85612 TRUE FALSE FALSE 79605.46147 87215.88375 112660.8486 61558.3123 85825.11866 76016.10832 77810.89696 84835.6914 81582.56145 64174.19796 1.240459001 1.359049065 1.755547434 0.959237735 1.337377348 1.184527594 1.212495044 1.321959512 1.271267332 1 15.96970574 -14 0.097758579 0.083321843 1.500418528 0.200238824 0.185778191 321.0885144 2.142330081 60.7001994 3.407729509 1.00E-14 14 1.417096686 S(ph)LEEMSLRR ddPTM_HeLa_A485_30min_R1 2 SLEEMSLRR 9 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(1)LEEMSLRR;S(1)LEEMSLRR ; 107.85 0.00061313 97793000 41204 51165 42225 31146 64312 52551 70445 84418 41538 48634 TRUE FALSE FALSE 50369.68765 57148.30167 57845.78463 32847.42711 57908.87147 55302.4891 55393.85027 63714.35314 49874.29559 36510.43884 1.379596884 1.565259238 1.584362896 0.899672208 1.586090809 1.514703489 1.517205819 1.745099625 1.366028379 1 15.15602139 S(ph)LEEMSLRR ddPTM_HeLa_A486_30min_R1 2 SLEEMSLRR 9 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(1)LEEMSLRR;S(1)LEEMSLRR ; 111.63 0.00050676 136269000 56485 50013 44615 22101 68192 51577 67210 64926 35366 57512 TRUE FALSE FALSE 52525.69319 46049.78774 61891.12283 51452.24492 59638.72349 45213.95414 50393.34713 50143.76712 38431.55336 43110.62086 1.218393337 1.068177327 1.435635154 1.19349348 1.383388184 1.048789213 1.168931139 1.163141846 0.891463695 1 15.39575572 -7.317034525 0.999409205 0.959868475 1.242498673 0.426278992 0.119505208 0.533488252 0.949866141 0.105531694 0.041623593 4.82E-08 7.317034525 0.282630197 S(ph)LEGGGCPAR ddPTM_HeLa_A485_30min_R1 4 SLEGGGCPAR 10 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 S(1)LEGGGCPAR;S(1)LEGGGCPAR;S(1)LEGGGCPAR;S(1)LEGGGCPAR ;;; 132.55 6.57E-05 3006600000 654044 780289 752445 558008 922580 775742 845830 918526 695534 832337 TRUE FALSE FALSE 799533.8314 871537.0109 1030805.717 588490.5641 830724.6958 816358.6516 665111.5107 693256.0583 835121.294 624850.7039 1.279559783 1.394792397 1.649683214 0.941809876 1.32947709 1.306485928 1.064432682 1.109474718 1.336513328 1 19.253152 -2.763875198 0.109358231 0.891340403 2.093598933 0.238435131 0.176589448 104.4987015 1.209169834 2.025677972 18.69918782 0.001722363 2.763875198 1.20225853 S(ph)LEGGGCPAR ddPTM_HeLa_A486_30min_R1 3 SLEGGGCPAR 10 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 S(1)LEGGGCPAR;S(1)LEGGGCPAR;S(1)LEGGGCPAR ;; 103.08 0.0012234 3534600000 751675 762550 671500 179089 1010848 708492 760389 743646 753349 759887 TRUE FALSE FALSE 698986.4642 702122.7608 931522.7834 416928.2427 884058.0181 621085.4605 570131.6296 574334.0395 818649.8979 569606.3492 1.227139524 1.232645601 1.635379916 0.731958559 1.552050849 1.090376646 1.000922182 1.008299926 1.437220458 1 19.1196057 S(ph)LELSSLAGPGEDPLSADSLGKPTR ddPTM_HeLa_A485_30min_R1 4 SLELSSLAGPGEDPLSADSLGKPTR 25 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 S(1)LELSSLAGPGEDPLSADSLGKPTR;S(0.996)LELS(0.004)S(0.001)LAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR ;;; 223.12 1.76E-38 1038030000 448492 322253 289920 577370 513400 359777 544020 421322 394578 789120 TRUE FALSE FALSE 548257.4981 359937.6851 397173.4726 608910.2611 462284.0933 378614.3674 427785.6828 317992.1189 473766.1853 592406.9067 0.925474521 0.607585227 0.670440314 1.02785814 0.780348926 0.639112008 0.722114611 0.536779898 0.799731029 1 19.17622894 -6.024855446 23.52765364 0.709531531 0.798769151 0.022102276 0.157804895 1096.164952 1037605.648 0.051472851 0.051756277 9.44E-07 6.024855446 0.08923762 S(ph)LELSSLAGPGEDPLSADSLGKPTR ddPTM_HeLa_A486_30min_R1 3 SLELSSLAGPGEDPLSADSLGKPTR 25 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 S(1)LELSSLAGPGEDPLSADSLGKPTR;S(0.999)LELS(0.001)SLAGPGEDPLSADSLGKPTR;S(0.999)LELS(0.001)SLAGPGEDPLSADSLGKPTR ;; 248.92 6.35E-50 820060000 527823 557912 356478 195628 524909 582519 661861 637565 475404 604674 TRUE FALSE FALSE 490825.3334 513701.0212 494515.8284 455431.8705 459070.0186 510653.7284 496256.3773 492405.3674 516612.4015 453259.6946 1.082878842 1.133348117 1.091020963 1.004792343 1.012818973 1.126625055 1.094861033 1.086364778 1.139771322 1 18.78997835 -6.299540134 24.99858112 1.095255761 1.066874315 0.051996379 0.049145357 1750.446256 1148493.76 0.018131109 0.015990404 5.02E-07 6.299540134 -0.028381445 S(ph)LENETLNKEEDCHS(ph)PTSKPPKPDQPLK ddPTM_HeLa_A485_30min_R1 1 SLENETLNKEEDCHSPTSKPPKPDQPLK 28 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.969)LENET(0.031)LNKEEDCHS(0.405)PT(0.316)S(0.279)KPPKPDQPLK 102.86 0.00031843 423140000 511910 194290 80730 705330 224010 255090 522130 402070 183190 822340 TRUE FALSE FALSE 625782.6134 217010.5254 110595.3865 743860.3919 201706.7779 268446.118 410572.6601 303461.7021 219954.5527 617345.772 1.013666314 0.351521846 0.179146584 1.20493316 0.326732258 0.434839162 0.665061103 0.491558727 0.356290693 1 19.23571924 -10.40392698 4.409264203 1.001057445 0.550736541 0.157358365 0.306273442 0.003082297 0.000416684 0.28710096 0.069476843 3.95E-11 10.40392698 -0.450320904 S(ph)LENFFLR ddPTM_HeLa_A485_30min_R1 4 SLENFFLR 8 0 Q6ZMT1;J3QKZ0 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR ;;; 154.05 0.00015959 354172000 126286.4 128466.8 148126.1 150710.7 174117 115446 151467.6 119711.5 137438.9 194908.1 TRUE FALSE FALSE 154378.374 143489.8747 202924.1084 158943.6439 156781.3001 121490.574 119105.3099 90352.06692 165021.6266 146321.0977 1.055065718 0.980650617 1.386841075 1.086266071 1.071487999 0.830301139 0.813999565 0.617491724 1.127804733 1 17.15877828 -6.156474474 3.342046131 0.849115756 1.131196128 0.355781018 0.158822902 0.259488411 5.461479755 0.055090995 0.054849521 6.97E-07 6.156474474 0.282080372 S(ph)LENFFLR ddPTM_HeLa_A486_30min_R1 5 SLENFFLR 8 0 Q6ZMT1;J3QKZ0 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR;S(1)LENFFLR ;;;; 155.11 0.00013855 490468000 166272.1 204751 146257.1 74340.8 187465.9 196511.5 208190 212936.9 169440.9 198589 TRUE FALSE FALSE 154617.2844 188525.7851 202891.766 173069.1394 163952.1788 172267.9091 156098.66 164455.8162 184128.1736 148861.0218 1.038668703 1.266454998 1.362960993 1.162622272 1.101377491 1.157239867 1.048620103 1.104760764 1.236913273 1 17.18360652 -5.515507711 22.53592099 1.114606985 1.233024356 0.222926808 0.095032965 133.9982977 409682.3264 0.027568283 0.037262915 3.05E-06 5.515507711 0.118417371 S(ph)LENPT(ph)PPFTPK ddPTM_HeLa_A485_30min_R1 1 SLENPTPPFTPK 12 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 0 S(1)LENPT(1)PPFTPK 90.707 0.0054618 77729000 169460 157670 124370 251280 204020 173450 273780 243670 145140 314370 TRUE FALSE FALSE 207155.7924 176108.135 170379.6385 265006.7901 183707.0524 182531.5738 215284.6664 183909.5504 174268.2667 236003.3446 0.877766342 0.746210336 0.721937389 1.122894214 0.778408682 0.773427911 0.912210235 0.779266712 0.738414394 1 17.84844778 -11.25433465 2.356733623 1.679930216 0.828998946 0.169851553 0.114157484 5962002.601 1158931.318 21701374.97 0.029031208 5.57E-12 11.25433465 -0.850931271 S(ph)LENPT(ph)PPFTPK ddPTM_HeLa_A486_30min_R1 2 SLENPTPPFTPK 12 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 0 S(1)LENPT(0.995)PPFT(0.005)PK;S(1)LENPT(1)PPFTPK ; 153.24 2.31E-07 223283000 605200 571170 266540 310740 557260 638990 723950 736000 452170 816020 TRUE FALSE FALSE 562778.6053 525908.409 369751.4262 723418.4239 487363.2546 560157.9106 542810.0528 568428.8668 491364.4597 611683.2806 0.920049024 0.859772411 0.604481826 1.182668297 0.796757521 0.915764626 0.887403776 0.929286258 0.803298824 1 19.22242532 S(ph)LEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPK ddPTM_HeLa_A485_30min_R1 1 SLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPK 46 2 P12931;P12931-2 P12931 SRC Proto-oncogene tyrosine-protein kinase Src 1 0 S(1)LEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPK 92.041 7.90E-06 289800000 44824 46074 22594 13855 49576 44611 76476 83267 36458 68582 TRUE FALSE FALSE 54794.94416 51461.95351 30952.46081 14611.86357 44640.03937 46946.76298 60136.27785 62845.63769 43774.78619 51485.76956 1.064273578 0.999537425 0.601184776 0.283803927 0.86703646 0.911839589 1.168017461 1.220640931 0.850230783 1 15.65188611 -6.375949822 2.705712133 1.073201216 0.737351603 0.27549541 0.224252394 0.383182772 5.452279148 0.095980245 0.082726375 4.21E-07 6.375949822 -0.335849613 S(ph)LEQNIQLPAALLSR ddPTM_HeLa_A485_30min_R1 1 SLEQNIQLPAALLSR 15 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 1 0 S(1)LEQNIQLPAALLSR 167.92 4.37E-12 47503000 23557 25287 30460 25717 27976 27643 34773 29838 24279 34635 TRUE FALSE FALSE 28797.17338 28244.09468 41728.42155 27121.85459 25190.61121 29090.34474 27343.46448 22520.18372 29151.5726 26001.13191 1.107535375 1.086264043 1.604869422 1.043102842 0.968827484 1.118810705 1.051625928 0.866123205 1.121165521 1 14.66628681 -5.484308134 24.99938492 1.01946116 1.260853617 0.359089742 0.148336979 598.4016058 387851.2446 0.041682435 0.061811129 3.28E-06 5.484308134 0.241392457 S(ph)LEQNIQLPAALLSR ddPTM_HeLa_A486_30min_R1 3 SLEQNIQLPAALLSR 15 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 1 0 S(1)LEQNIQLPAALLSR;S(1)LEQNIQLPAALLSR;S(1)LEQNIQLPAALLSR ;; 230.05 4.25E-34 104517000 74826 87287 65976 63817 94910 90184 102294 106361 71791 107854 TRUE FALSE FALSE 69581.0838 80370.06023 91523.6741 148569.2011 83005.5028 79058.015 76698.95924 82144.92214 78013.90168 80846.65639 0.860655059 0.994104937 1.13206505 1.837666612 1.026702977 0.977876124 0.948696739 1.016058373 0.964961387 1 16.30290049 -5.974533312 24.99939357 0.98289462 1.216500761 0.166614679 0.23915919 430.5984365 422695.1999 0.079606218 0.090262293 1.06E-06 5.974533312 0.233606141 S(ph)LEQYDQVLDGAHGASLTDLANLSEGVSLAER ddPTM_HeLa_A485_30min_R1 1 SLEQYDQVLDGAHGASLTDLANLSEGVSLAER 32 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2;M0R3I1 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 S(1)LEQYDQVLDGAHGASLTDLANLSEGVSLAER 171.46 9.65E-15 46469000 9775.3 10207 8811.7 10500 12983 8735.2 12831 14250 10514 14744 TRUE FALSE FALSE 11949.78176 11400.61986 12071.51452 11073.58841 11690.36693 9192.561565 10089.55203 10755.16516 12624.06336 11068.59214 1.079611716 1.029997285 1.09060975 1.000451392 1.056174695 0.830508654 0.91154791 0.971683211 1.140530177 1 13.43418411 S(ph)LERPMSSASMASDFR ddPTM_HeLa_A485_30min_R1 2 SLERPMSSASMASDFR 16 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 S(1)LERPMSSASMASDFR;S(1)LERPMSSASMASDFR ; 149.53 2.67E-08 548300000 265100 325590 301030 309550 336660 304970 367360 373790 291480 403840 TRUE FALSE FALSE 324070.5804 363664.9182 412393.5239 326459.9327 303140.9483 320937.7576 288870.5349 282117.4164 349977.3624 303170.1201 1.06893971 1.199540766 1.360271005 1.076820937 0.999903777 1.058606163 0.952833132 0.930558118 1.154392663 1 18.20976805 -5.494352223 11.39281259 1.013953483 1.210303023 0.498357737 0.086827183 0.802177857 318.2934174 0.024750182 0.036068615 3.20E-06 5.494352223 0.19634954 S(ph)LERPMSSASMASDFR ddPTM_HeLa_A486_30min_R1 1 SLERPMSSASMASDFR 16 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 S(1)LERPMSSASMASDFR 133.21 5.68E-06 307130000 246310 238490 162660 69234 212370 216400 267560 229040 185920 304670 TRUE FALSE FALSE 229044.9409 219591.1838 225646.3082 161180.2509 185732.5743 189702.7682 200613.658 176892.5919 202035.6953 228378.6489 1.002917488 0.961522388 0.988035919 0.705758842 0.81326593 0.83065019 0.878425628 0.774558361 0.884652292 1 17.80106825 -5.223336517 24.83321817 0.831618067 0.981895055 0.441126002 0.073269946 434.7268347 283328.8582 0.018832736 0.032618293 5.98E-06 5.223336517 0.150276988 S(ph)LES(ph)VLSLGPRPTGGGSSPPEIR ddPTM_HeLa_A485_30min_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 0 S(0.928)LES(0.423)VLS(0.112)LGPRPT(0.225)GGGS(0.179)S(0.134)PPEIR 56.172 0.031477 90860000 48722 64382 54573 55049 75993 67416 77831 91364 62788 79761 TRUE FALSE FALSE 59560.04081 71910.91485 74761.82367 58056.18748 68426.87009 70945.79752 61201.77103 68956.83575 75388.97567 59878.05059 0.994689043 1.200956179 1.248568097 0.969573774 1.142770505 1.18483813 1.022106939 1.151621255 1.259041918 1 15.86973963 -7.480191373 24.97767718 1.154791544 1.114676537 0.004106887 0.104848725 2063.003913 1207131.217 0.055994122 0.026895462 3.31E-08 7.480191373 -0.040115008 S(ph)LESCLLDLR ddPTM_HeLa_A485_30min_R1 4 SLESCLLDLR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 S(1)LESCLLDLR;S(1)LESCLLDLR;S(0.998)LES(0.002)CLLDLR;S(1)LESCLLDLR ;;; 174.42 1.37E-07 387292000 202459 230091 231023 217200 314736 222080 301012 313865 236357 308295 TRUE FALSE FALSE 247495.3061 256998.1409 316488.0214 229065.086 283399.7787 233707.7654 236698.3272 236889.1166 283791.6819 231442.7302 1.069358739 1.110417859 1.367457172 0.989726857 1.224492031 1.00978659 1.02270798 1.023532329 1.226185336 1 17.82029572 -6.27083807 24.94588369 1.055804814 1.15288666 0.157357298 0.110890831 1274.494569 3382738.026 0.038143096 0.034088888 5.36E-07 6.27083807 0.097081846 S(ph)LESCLLDLR ddPTM_HeLa_A486_30min_R1 5 SLESCLLDLR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 S(1)LESCLLDLR;S(1)LESCLLDLR;S(1)LESCLLDLR;S(1)LESCLLDLR;S(1)LESCLLDLR ;;;; 181.31 1.51E-09 535347000 215924 252352 209493 103786 301927 250669 307684 306884 205303 272355 TRUE FALSE FALSE 200788.8426 232354.7085 290614.3 241619.0531 264056.5003 219744.0074 230698.2089 237013.2124 223098.8293 204155.5353 0.983509178 1.13812593 1.42349459 1.183504786 1.293408479 1.076355863 1.13001202 1.160944336 1.09278854 1 17.63930916 -6.280782241 24.62811432 1.10445366 1.211736351 0.195706278 0.112024823 1281.318979 1631421.929 0.040921394 0.036145932 5.24E-07 6.280782241 0.107282691 S(ph)LESINSR ddPTM_HeLa_A485_30min_R1 6 SLESINSR 8 0 E5RJH3;A0A0C4DH44;E5RI99;P62888 E5RJH3 RPL30 60S ribosomal protein L30 1 0 S(0.997)LES(0.003)INSR;S(0.999)LES(0.001)INSR;S(0.999)LES(0.001)INSR;S(0.987)LES(0.013)INSR;S(0.998)LES(0.002)INSR;S(1)LESINSR ;;;;; 180.15 8.01E-06 5092630000 1136038 1141670 1205252 1468543 1711100 1430659 1845870 2024290 1232942 1855750 TRUE FALSE FALSE 1388745.734 1275178.375 1651124.87 1548765.786 1540736.876 1505566.093 1451484.795 1527829.704 1480382.15 1393145.678 0.99684172 0.915323068 1.18517747 1.111704117 1.105940966 1.080695377 1.04187582 1.096676197 1.062618342 1 20.40991469 -4.745997503 24.99999875 1.088962772 0.956082358 0.52352945 0.049334382 176.4991882 285743.0604 0.012292408 0.03226973 1.79E-05 4.745997503 -0.132880414 S(ph)LESINSR ddPTM_HeLa_A486_30min_R1 5 SLESINSR 8 0 E5RJH3;A0A0C4DH44;E5RI99;P62888 E5RJH3 RPL30 60S ribosomal protein L30 1 0 S(0.999)LES(0.001)INSR;S(0.999)LES(0.001)INSR;S(1)LESINSR;S(0.999)LES(0.001)INSR;S(1)LESINSR ;;;; 156.64 0.00010837 5527210000 1627060 1395950 1033310 866002 1704860 1782120 2160760 2065480 1213000 2476430 TRUE FALSE FALSE 1513011.496 1285329.838 1433435.305 2016096.421 1491020.562 1562260.154 1620114.994 1595215.293 1318143.817 1856315.809 0.815061472 0.692409035 0.772193663 1.086074046 0.803214924 0.841591795 0.872758281 0.859344776 0.710085973 1 20.82401074 -11.58230353 2.177797563 4.116760113 0.831934958 0.199661734 0.103000496 3934881.822 429902.4808 60147452.49 0.026764527 2.62E-12 11.58230353 -3.284825155 S(ph)LESVLSLGPRPT(ph)GGGSSPPEIR ddPTM_HeLa_A485_30min_R1 2 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 0 S(0.998)LES(0.118)VLS(0.022)LGPRPT(0.345)GGGS(0.248)S(0.269)PPEIR;S(0.998)LES(0.01)VLS(0.021)LGPRPT(0.371)GGGS(0.313)S(0.288)PPEIR ; 59.598 0.019599 511340000 174287 231787 231926 206808 282950 239952 288170 360290 217903 307970 TRUE FALSE FALSE 213056.5419 258892.4734 317725.0786 218105.3974 254778.5045 252515.5157 226600.1254 271928.3126 261634.1334 231198.7468 0.92152983 1.119783204 1.374250869 0.943367559 1.101989124 1.092201057 0.980109661 1.176166897 1.131641659 1 17.81877405 S(ph)LESVLSLGPRPT(ph)GGGSSPPEIR ddPTM_HeLa_A486_30min_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 0 S(1)LES(0.002)VLS(0.001)LGPRPT(0.453)GGGS(0.287)S(0.257)PPEIR 96.242 0.0011526 195320000 151770 156950 116500 54497 167460 149380 177720 172600 124360 172050 TRUE FALSE FALSE 141131.7067 144512.7104 161611.92 126871.7701 146455.6053 130951.0144 133252.5763 133302.7478 135139.6249 128967.5601 1.094319429 1.120535352 1.253120706 0.983749479 1.135600341 1.015379482 1.033225535 1.033614559 1.047857498 1 16.9766487 -5.275901188 24.99532849 1.040254193 1.15244619 0.508644368 0.054043048 648.9850085 1121683.661 0.014913433 0.022228708 5.30E-06 5.275901188 0.112191998 S(ph)LESVLSLGPRPTGGGS(ph)SPPEIR ddPTM_HeLa_A485_30min_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 0 S(0.999)LESVLSLGPRPT(0.008)GGGS(0.528)S(0.463)PPEIR 98.94 0.0010848 197130000 158880 197300 186460 174760 240620 189330 250560 284450 180170 244830 TRUE FALSE FALSE 194222.3079 220372.5187 255439.3132 184306.6963 216663.0279 199243.026 197025.8091 214688.1915 216328.4664 183798.3868 1.056713888 1.198990495 1.389779953 1.002765582 1.178808105 1.084030331 1.071967021 1.168063525 1.176987841 1 17.48776458 -5.290112879 24.99992801 1.10628069 1.213544501 0.233481585 0.096761018 1097.155082 956588.2604 0.027176917 0.040318528 5.13E-06 5.290112879 0.107263812 S(ph)LESVLSLGPRPTGGGS(ph)SPPEIR ddPTM_HeLa_A486_30min_R1 3 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 0 S(1)LES(0.004)VLS(0.002)LGPRPT(0.269)GGGS(0.573)S(0.152)PPEIR;S(1)LES(0.041)VLSLGPRPT(0.219)GGGS(0.442)S(0.298)PPEIR;S(1)LES(0.006)VLS(0.001)LGPRPT(0.074)GGGS(0.55)S(0.369)PPEIR ;; 112.9 0.00017271 706487000 282965 285824 228470 100789 315964 265321 316347 306702 259243 311832 TRUE FALSE FALSE 263130.6147 263174.2653 316939.7026 234641.8856 276332.8489 232588.3926 237193.6346 236872.6499 281714.392 233747.2375 1.125705773 1.125892516 1.3559078 1.003827417 1.182186587 0.995042316 1.014744119 1.013370906 1.205209503 1 17.83458979 -5.297526325 24.99642959 1.060353601 1.194841283 0.331244918 0.093109371 685.3171084 474698.7911 0.025869122 0.038371685 5.04E-06 5.297526325 0.134487682 S(ph)LESVLSLGPRPTGGGSSPPEIR ddPTM_HeLa_A486_30min_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 1 0 S(0.996)LES(0.001)VLS(0.001)LGPRPTGGGSSPPEIR 72.881 0.0034552 50400000 7596.7 8587.7 7421 4688.8 10509 7991.5 11142 11154 6017.2 11018 TRUE FALSE FALSE 7064.210559 7907.179376 10294.60994 10915.76336 9190.863227 7005.589982 8354.153752 8614.47769 6538.775741 8259.021085 0.85533267 0.957399103 1.246468539 1.321677623 1.11282719 0.848234907 1.011518637 1.043038588 0.791713167 1 13.01175508 -6.236371166 23.15626723 0.946129582 1.111481207 0.237376388 0.142040911 495.0520728 457293.791 0.051126858 0.05109709 5.80E-07 6.236371166 0.165351626 S(ph)LETEILESLK ddPTM_HeLa_A485_30min_R1 1 SLETEILESLK 11 0 P48681 P48681 NES Nestin 1 0 S(1)LETEILESLK 141.38 5.68E-05 0 6926.4 6246.4 4632.1 9607.2 5657.4 7343.1 7846.4 6182.1 6496.1 12138 TRUE FALSE FALSE 8467.153784 6976.862144 6345.706548 10132.01701 5094.129392 7727.573361 6169.952541 4665.930282 7799.807684 9112.219983 0.929208667 0.765659977 0.696395232 1.111915321 0.559043724 0.848045084 0.677107505 0.51205198 0.855972277 1 13.15358686 -5.792256144 24.99999459 0.71969345 0.855114588 0.116841316 0.169995736 415.9724192 337454.0439 0.050853637 0.057668699 1.61E-06 5.792256144 0.135421139 S(ph)LETEILESLK ddPTM_HeLa_A486_30min_R1 3 SLETEILESLK 11 0 P48681 P48681 NES Nestin 1 0 S(0.989)LET(0.011)EILESLK;S(1)LETEILESLK;S(1)LETEILESLK ;; 211.26 3.32E-15 22045000 57533.2 57143.7 23220.5 25834.07 42281.2 63239.9 71454.8 62981.3 51581.3 84951.4 TRUE FALSE FALSE 53500.41978 52615.4251 32212.09947 60143.02054 36977.89764 55438.00411 53576.05327 48641.83286 56052.40862 63679.0165 0.840157759 0.826260015 0.505851083 0.944471568 0.580692034 0.870585118 0.841345489 0.763859675 0.880233579 1 15.95853043 -8.239562339 0.527032085 1.007839192 0.747702266 0.250930805 0.126000089 1.80437071 1.095650775 0.152662942 0.062263725 5.76E-09 8.239562339 -0.260136927 S(ph)LETPQPAASLPDNTMVTHLFQK ddPTM_HeLa_A485_30min_R1 2 SLETPQPAASLPDNTMVTHLFQK 23 0 T1ECW5;O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170;A0A0A0MSJ8 T1ECW5 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 1 0 S(0.996)LET(0.004)PQPAASLPDNTMVTHLFQK;S(0.997)LET(0.003)PQPAASLPDNTMVTHLFQK ; 181.62 7.12E-21 173243000 82394 88551 71208 108257 113056 104886 117707 136409 108386 149088 TRUE FALSE FALSE 100722.261 98906.26916 97550.80241 114170.8058 101799.7477 110377.6688 92557.93787 102954.4789 130138.076 111923.1054 0.899923753 0.8836984 0.871587704 1.020082542 0.909550779 0.986191979 0.826977929 0.919867962 1.162745401 1 16.77214837 -7.741434983 24.9173364 1.081372628 0.915057706 0.524689437 0.063440471 148.9954103 185589.0212 0.041729131 0.015726415 1.81E-08 7.741434983 -0.166314921 S(ph)LETPQPAASLPDNTMVTHLFQK ddPTM_HeLa_A486_30min_R1 1 SLETPQPAASLPDNTMVTHLFQK 23 0 T1ECW5;O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170;A0A0A0MSJ8 T1ECW5 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 1 0 S(1)LETPQPAASLPDNTMVTHLFQK 239.34 7.81E-49 101230000 53948 56471 33388 23591 54323 54280 65072 59995 51403 78284 TRUE FALSE FALSE 50166.52379 51996.0323 46316.72776 54921.04022 47509.3028 47583.48548 48790.29734 46335.44818 55858.65343 58681.17686 0.854899756 0.886076849 0.789294459 0.93592261 0.809617416 0.810881581 0.831447151 0.789613479 0.951900702 1 15.84061018 -7.918298344 5.06387692 0.998777584 0.839934169 0.625758373 0.043205506 0.115509556 4.730972441 0.04085529 0.010659006 1.21E-08 7.918298344 -0.158843415 S(ph)LFINHHPPGQIAR ddPTM_HeLa_A486_30min_R1 1 SLFINHHPPGQIAR 14 0 Q8ND76-2;Q8ND76;Q8ND76-3;R4GNF3;R4GN48 Q8ND76-2 CCNY Cyclin-Y 1 0 S(1)LFINHHPPGQIAR 61.524 0.01905 519400000 133190 161460 150080 67254 208390 174340 178570 161010 165770 253080 TRUE FALSE FALSE 123854.0688 148665.3216 208194.9953 156570.7108 182251.783 152831.7034 133889.8973 124351.5378 180139.0771 189707.1207 0.652869899 0.783657045 1.097454827 0.825328592 0.960700802 0.805619224 0.705771596 0.655492199 0.94956413 1 17.53341431 -7.983556373 24.89069964 1.000000135 0.820133442 0.207531306 0.128994952 308.1699433 466475.3759 0.132135448 0.034117226 1.04E-08 7.983556373 -0.179866693 S(ph)LGEEIQESLK ddPTM_HeLa_A485_30min_R1 2 SLGEEIQESLK 11 0 P48681 P48681 NES Nestin 1 0 S(1)LGEEIQESLK;S(1)LGEEIQESLK ; 222.74 6.22E-18 177293000 118746 100456 66805 146473 121913 103959 144748 116864 96356 187562 TRUE FALSE FALSE 145160.638 112203.4553 91518.94949 154474.4491 109774.9137 109402.1325 113821.4073 88202.92076 115693.7654 140806.2452 1.030924714 0.796864196 0.64996371 1.097071006 0.779616795 0.776969319 0.808354822 0.626413414 0.82165223 1 17.1033518 S(ph)LGEEIQESLK ddPTM_HeLa_A486_30min_R1 3 SLGEEIQESLK 11 0 P48681 P48681 NES Nestin 1 0 S(1)LGEEIQESLK;S(1)LGEEIQESLK;S(1)LGEEIQESLK ;; 192.65 5.26E-11 202999000 178737 178431 87191 73364 145545 202283 220936 202636 137224 236324 TRUE FALSE FALSE 166208.4593 164291.4777 120953.6903 170795.0996 127289.3889 177327.3801 165655.476 156500.2063 149118.6868 177146.9322 0.938251977 0.927430556 0.682787383 0.964143705 0.718552601 1.001018634 0.935130369 0.883448583 0.841779674 1 17.43458696 -6.2916059 24.92983375 0.925169401 0.848214385 0.165207878 0.095992858 1428.953369 1180892.809 0.033168722 0.029256358 5.11E-07 6.2916059 -0.076955017 S(ph)LGEISALTSK ddPTM_HeLa_A486_30min_R1 2 SLGEISALTSK 11 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 S(1)LGEISALTSK;S(1)LGEISALTSK ; 148.68 7.38E-07 44711000 124592 148905 105295 70031 149839 173040 189358 178621 130197 173974 TRUE FALSE FALSE 115858.7442 137105.2255 146068.0439 163035.7072 131044.7954 151692.0841 141978.6256 137952.8976 141482.5808 130409.778 0.888420684 1.051341606 1.120069723 1.250180083 1.0048694 1.163195632 1.088711504 1.057841672 1.084907765 1 16.99269252 -4.300334988 2.892621533 1.102171321 0.860971914 0.442032023 0.069604669 0.31583662 3.959220782 0.017479142 0.170086549 5.01E-05 4.300334988 -0.241199407 S(ph)LGEQDQMTLRPPEK ddPTM_HeLa_A485_30min_R1 1 SLGEQDQMTLRPPEK 15 1 P48681 P48681 NES Nestin 1 0 S(1)LGEQDQMTLRPPEK 184.35 3.71E-18 702200000 422510 280510 300820 689810 416630 324820 453310 311640 374680 845610 TRUE FALSE FALSE 516495.8919 313313.2044 412105.8362 727492.5736 375148.8543 341827.0729 356456.6153 235209.8014 449874.8392 634814.9893 0.813616409 0.49355042 0.649174709 1.145991487 0.590957776 0.538467236 0.5615126 0.370517088 0.708670789 1 19.27597667 -8.027235985 23.56046528 1.000000015 0.642193927 0.219384917 0.199760713 2258.930286 1954084.87 0.202958058 0.052403545 9.39E-09 8.027235985 -0.357806087 S(ph)LGEQDQMTLRPPEK ddPTM_HeLa_A486_30min_R1 5 SLGEQDQMTLRPPEK 15 1 P48681 P48681 NES Nestin 1 0 S(1)LGEQDQMTLRPPEK;S(1)LGEQDQMTLRPPEK;S(1)LGEQDQMTLRPPEK;S(1)LGEQDQMTLRPPEK;S(1)LGEQDQMTLRPPEK ;;;; 160.67 3.58E-12 3011109000 1549061 1853714 1001788 712935 1582194 2157793 2137520 1955772 1718722 2113557 TRUE FALSE FALSE 1440479.823 1706818.952 1389707.142 1659748.71 1383740.475 1891586.438 1602689.888 1510485.41 1867702.207 1584308.57 0.909216708 1.077327349 0.877169491 1.047617075 0.873403389 1.193950771 1.011602107 0.953403547 1.178875278 1 20.59542192 -6.245331283 24.99241965 1.061156312 0.964239785 0.255214864 0.093754524 1300.8642 2018348.903 0.029458754 0.029371424 5.68E-07 6.245331283 -0.096916527 S(ph)LGEQDQMTLRPPEKVDLEPLK ddPTM_HeLa_A485_30min_R1 4 SLGEQDQMTLRPPEKVDLEPLK 22 2 P48681 P48681 NES Nestin 1 0 S(0.998)LGEQDQMT(0.002)LRPPEKVDLEPLK;S(1)LGEQDQMTLRPPEKVDLEPLK;S(0.999)LGEQDQMT(0.001)LRPPEKVDLEPLK;S(1)LGEQDQMTLRPPEKVDLEPLK ;;; 111.43 0.0001468 6253680000 775742 532036 383553 1153130 799647 721821 1145120 1021924 623143 1569590 TRUE FALSE FALSE 948303.1316 594252.9821 525445.2157 1216122.572 720031.3369 759614.4314 900455.7572 771295.5367 748202.0843 1178320.099 0.80479246 0.504322198 0.445927398 1.032081667 0.611065989 0.644658809 0.764186029 0.654572164 0.63497354 1 20.16830008 -10.81877834 2.384496114 1.120173688 0.674898671 0.279802013 0.155223951 16940064.35 10279438.8 11694309.97 0.0389273 1.52E-11 10.81877834 -0.445275017 S(ph)LGEQDQMTLRPPEKVDLEPLK ddPTM_HeLa_A486_30min_R1 5 SLGEQDQMTLRPPEKVDLEPLK 22 2 P48681 P48681 NES Nestin 1 0 S(1)LGEQDQMTLRPPEKVDLEPLK;S(1)LGEQDQMTLRPPEKVDLEPLK;S(0.552)LGEQDQMT(0.448)LRPPEKVDLEPLK;S(0.998)LGEQDQMT(0.002)LRPPEKVDLEPLK;S(1)LGEQDQMTLRPPEKVDLEPLK ;;;; 160.57 7.66E-14 9279620000 1950879 1661439 748521 1132690 1556384 2181870 2610570 2551930 1333856 3083800 TRUE FALSE FALSE 1814132.456 1529780.523 1038368.377 2636959.563 1361167.806 1912693.063 1957377.774 1970911.247 1449475.712 2311596.408 0.784796364 0.6617853 0.449199685 1.140752579 0.588843191 0.827433827 0.846764499 0.852619099 0.627045321 1 21.1404581 -14 0.111832011 1.717605367 0.630158771 0.137813243 0.179533407 333.1377646 2.461821274 55.76293018 2.106344608 1.00E-14 14 -1.087446596 S(ph)LGGAVGSVASGAR ddPTM_HeLa_A485_30min_R1 1 SLGGAVGSVASGAR 14 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 S(1)LGGAVGSVASGAR 90.476 0.0013709 598840000 211250 190250 120760 265060 236450 194990 271930 287970 167670 326190 TRUE FALSE FALSE 258241.8337 212498.0825 165434.1492 279539.5566 212908.2078 205199.3749 213829.934 217344.906 201319.831 244876.8361 1.054578448 0.867775352 0.675581047 1.141551651 0.869450174 0.837969725 0.873214214 0.887568255 0.822126887 1 17.90169678 S(ph)LGGAVGSVASGAR ddPTM_HeLa_A486_30min_R1 3 SLGGAVGSVASGAR 14 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 S(1)LGGAVGSVASGAR;S(1)LGGAVGSVASGAR;S(1)LGGAVGSVASGAR ;; 135.86 1.01E-05 708650000 1625630 1468880 801774 610890 1492180 1562070 2023500 1781720 1130880 1841420 TRUE FALSE FALSE 1511681.732 1352480.599 1112242.365 1422182.793 1305016.87 1369357.685 1517198.898 1376061.251 1228905.589 1380316.446 1.095170412 0.979833721 0.805787954 1.030330977 0.945447599 0.992060689 1.099167442 0.996917232 0.890307141 1 20.39656762 -6.508090945 24.30399142 1.003380037 0.96615864 0.016858829 0.083132868 1918.888905 3153735.44 0.030950087 0.026312063 3.10E-07 6.508090945 -0.037221397 S(ph)LGHPEPLSNGRPQGNSR ddPTM_HeLa_A485_30min_R1 5 SLGHPEPLSNGRPQGNSR 18 1 P49768;P49768-2;P49768-7;G3V4M0;G3V2G7;G3V3P0;G3V3Z0;G3V499;H0YM52;G3V5B1;G3V4P4;G3V2B1;G3V449;P49768-4;P49768-3;P49768-5;P49768-6;G3V519 P49768 PSEN1 Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12 1 0 S(1)LGHPEPLSNGRPQGNSR;S(1)LGHPEPLSNGRPQGNSR;S(1)LGHPEPLSNGRPQGNSR;S(1)LGHPEPLSNGRPQGNSR;S(0.991)LGHPEPLS(0.008)NGRPQGNS(0.001)R ;;;; 143.4 2.70E-08 4224130000 719647 798771 506352 655221 512677 781935 926630 967919 636600 1341832 TRUE FALSE FALSE 879729.9924 892180.3201 693672.6759 691014.0641 461633.0778 822875.9075 728647.9306 730535.3476 764359.7808 1007337.977 0.873321579 0.885681212 0.688619601 0.685980356 0.458270301 0.816881649 0.723340078 0.725213746 0.758791784 1 19.94211638 -8.422315883 2.082372175 0.999998549 0.727547433 0.328355612 0.114036012 4.045339139 18.38404546 0.117228915 0.032270809 3.78E-09 8.422315883 -0.272451116 S(ph)LGHPEPLSNGRPQGNSR ddPTM_HeLa_A486_30min_R1 3 SLGHPEPLSNGRPQGNSR 18 1 P49768;P49768-2;P49768-7;G3V4M0;G3V2G7;G3V3P0;G3V3Z0;G3V499;H0YM52;G3V5B1;G3V4P4;G3V2B1;G3V449;P49768-4;P49768-3;P49768-5;P49768-6;G3V519 P49768 PSEN1 Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12 1 0 S(1)LGHPEPLSNGRPQGNSR;S(0.999)LGHPEPLS(0.001)NGRPQGNSR;S(0.999)LGHPEPLS(0.001)NGRPQGNSR ;; 129.85 4.30E-06 2257810000 294806 294254 262392 63969 432085 331877 275594 289565 327231 409483 TRUE FALSE FALSE 274141.6218 270936.2414 363997.2095 148923.0648 377888.8703 290933.39 206637.4663 223637.3707 355595.6466 306945.7915 0.893127156 0.882684333 1.185868057 0.485177086 1.231125758 0.947833129 0.67320508 0.728589141 1.15849657 1 18.22762436 S(ph)LGLDINMDSR ddPTM_HeLa_A485_30min_R1 4 SLGLDINMDSR 11 0 Q96H22-5;Q96H22-4;Q96H22;Q96H22-3 Q96H22-5 CENPN Centromere protein N 1 0 S(1)LGLDINMDSR;S(1)LGLDINMDSR;S(1)LGLDINMDSR;S(1)LGLDINMDSR ;;; 185.2 1.44E-10 144216000 125320 154476 163240 134778 205356 146721 174117 216418 144305 170777 TRUE FALSE FALSE 153197.0017 172540.6244 223629.269 142140.5809 184910.0356 154403.0847 136915.4805 163341.1462 173265.6899 128205.4368 1.194933736 1.345813631 1.744304099 1.108693862 1.442294806 1.204341161 1.067938178 1.274057873 1.351469128 1 16.96809792 -6.323495853 7.56430002 1.188924534 1.372464269 0.210016943 0.181419883 0.512754319 56.01171385 0.064133205 0.056585856 4.75E-07 6.323495853 0.183539736 S(ph)LGLDINMDSR ddPTM_HeLa_A486_30min_R1 2 SLGLDINMDSR 11 0 Q96H22-5;Q96H22-4;Q96H22;Q96H22-3 Q96H22-5 CENPN Centromere protein N 1 0 S(1)LGLDINMDSR;S(1)LGLDINMDSR ; 129.77 4.51E-05 88232000 83674 82165 73486 38004 109492 87674 102587 101802 73853 94061 TRUE FALSE FALSE 77808.88469 75653.94616 101941.7472 88475.23262 95758.49239 76857.67328 76918.64755 78623.90692 80254.6375 70507.51337 1.103554515 1.072991268 1.445828145 1.254834108 1.358131748 1.090063592 1.090928383 1.115113882 1.138242347 1 16.10548938 -6.291420668 23.98899905 1.094317879 1.248870714 0.358856183 0.106819208 539.1852424 431417.4643 0.039735235 0.035049069 5.11E-07 6.291420668 0.154552836 S(ph)LGLTPVDR ddPTM_HeLa_A485_30min_R1 1 SLGLTPVDR 9 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 S(1)LGLTPVDR 78.653 0.0091179 59230000 36154 49660 49484 43171 58580 39781 52164 56916 42693 52495 TRUE FALSE FALSE 44196.33257 55467.30502 67790.1908 45529.32242 52747.56951 41863.87165 41018.73526 42957.26176 51261.0935 39408.9626 1.121479218 1.40747945 1.720171919 1.155303754 1.338466329 1.062293166 1.040847882 1.090037873 1.300747092 1 15.26623615 -5.917203274 1.740662366 1.104209298 1.397932528 0.336881799 0.171179482 0.40809296 2.533030266 0.064821218 0.076216799 1.21E-06 5.917203274 0.29372323 S(ph)LGLTPVDR ddPTM_HeLa_A486_30min_R1 1 SLGLTPVDR 9 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 S(1)LGLTPVDR 90.05 0.0035584 84017000 44887 42280 30020 12262 49182 41922 48337 46698 39105 47246 TRUE FALSE FALSE 41740.6531 38929.57882 41644.54796 28546.55569 43013.13496 36750.08987 36242.57134 36065.88481 42494.65289 35415.29408 1.178605294 1.099230709 1.175891632 0.806051635 1.214535586 1.037689812 1.023359322 1.018370333 1.199895525 1 15.1120849 S(ph)LGPGAGPR ddPTM_HeLa_A486_30min_R1 2 SLGPGAGPR 9 0 H3BUV2;P78549-3;P78549-2;P78549 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 S(1)LGPGAGPR;S(1)LGPGAGPR ; 93.325 0.0021909 0 116666 135402 130765 34780 150480 118345 117088 122102 134312 109232 TRUE FALSE FALSE 108488.3159 124672.2524 181400.71 80969.59768 131605.3952 103744.7971 87791.34397 94302.04007 145954.2723 81879.59622 1.324973753 1.522629057 2.215456822 0.988886138 1.607303911 1.267040898 1.0722005 1.151715988 1.782547534 1 16.32121637 -5.288236572 24.99766038 1.279472787 1.67118113 0.265834271 0.319484721 1027.957872 958924.4444 0.089058157 0.132134108 5.15E-06 5.288236572 0.391708343 S(ph)LGPSLATDKS ddPTM_HeLa_A485_30min_R1 1 SLGPSLATDKS 11 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 S(1)LGPSLATDKS 116.74 0.00082034 109280000 179950 143600 81990 226570 123490 157540 203730 244190 142360 473840 TRUE FALSE FALSE 219979.2567 160392.7708 112321.5129 238946.9454 111194.902 165788.5508 160201.4212 184302.0196 170930.3462 355720.4084 0.618404937 0.450895611 0.315757854 0.671726839 0.31259073 0.466064209 0.450357689 0.51810921 0.480518807 1 18.44038422 -9.359071387 0.893120882 1.018222313 0.466900478 0.683843296 0.106865709 9.671590071 5.506639276 0.748563157 0.032701491 4.37E-10 9.359071387 -0.551321835 S(ph)LGPSLATDKS ddPTM_HeLa_A486_30min_R1 1 SLGPSLATDKS 11 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 S(1)LGPSLATDKS 84.365 0.011681 75813000 225950 172750 134640 66329 205190 162630 172570 168990 148360 254470 TRUE FALSE FALSE 210112.0718 159060.6609 186776.2138 154417.2641 179453.1569 142566.3641 129391.1607 130514.666 161219.9643 190749.0557 1.101510417 0.83387391 0.979172416 0.809530949 0.940781365 0.747402726 0.678331855 0.68422182 0.845194036 1 17.54131639 -1 0.48407603 0.784435869 9.001704037 0.343147226 0.108324655 106.6551722 1.185520451 0.061626769 883.6343772 0.1 1 8.217268167 S(ph)LGPVELLLR ddPTM_HeLa_A485_30min_R1 2 SLGPVELLLR 10 0 Q16512;Q16512-2;Q16512-3;K7EKY9;K7EM57 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 S(1)LGPVELLLR;S(1)LGPVELLLR ; 78.692 0.0084795 11366900 5010.9 6151.5 4542 3854.2 7797.3 7025.8 7194.8 8686.2 5669.4 8718.9 TRUE FALSE FALSE 6125.557418 6870.864414 6222.274808 4064.745187 7020.973434 7393.660024 5657.572204 6555.895831 6807.196577 6545.438689 0.935851317 1.049717939 0.950627621 0.621004241 1.072651318 1.129589684 0.864353403 1.001597623 1.039990885 1 12.67627417 S(ph)LGPVELLLR ddPTM_HeLa_A486_30min_R1 1 SLGPVELLLR 10 0 Q16512;Q16512-2;Q16512-3;K7EKY9;K7EM57 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 S(1)LGPVELLLR 79.659 0.0078646 5338600 2561.4 2775 1802.7 767.13 1514.2 2791.1 3121.9 3203.8 2530.6 3010 TRUE FALSE FALSE 2381.859087 2555.098894 2500.753718 1785.917409 1324.274917 2446.76246 2340.7676 2474.364678 2749.954446 2256.276408 1.055659262 1.132440549 1.108354326 0.791533077 0.586929381 1.084424963 1.037447181 1.09665849 1.218802109 1 11.1397281 -6.469432679 24.99999508 1.091234404 0.936421636 0.186822653 0.159015448 638.5809084 298703.2697 0.062996326 0.055557124 3.39E-07 6.469432679 -0.154812767 S(ph)LGSAGPSGTLPR ddPTM_HeLa_A485_30min_R1 4 SLGSAGPSGTLPR 13 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 S(1)LGSAGPSGTLPR;S(0.999)LGS(0.001)AGPSGTLPR;S(1)LGSAGPSGTLPR;S(1)LGSAGPSGTLPR ;;; 210.73 5.99E-22 1186526000 263965 255615 292686 280160 390030 334232 429453 418618 290773 381372 TRUE FALSE FALSE 322683.1036 285506.9507 400962.7311 295464.4314 351197.2437 351731.8707 337696.8582 315951.2791 349128.474 286302.979 1.12706862 0.99721963 1.400483964 1.031999151 1.226662904 1.228530251 1.179508713 1.103555681 1.219437098 1 18.12718316 -10.59599929 5.970820101 0.999349803 1.167981127 0.178324376 0.108361883 0.000894074 6.05E-05 0.100018008 0.024166327 2.54E-11 10.59599929 0.168631324 S(ph)LGSAGPSGTLPR ddPTM_HeLa_A486_30min_R1 2 SLGSAGPSGTLPR 13 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 S(0.981)LGS(0.019)AGPSGTLPR;S(1)LGSAGPSGTLPR ; 223.03 1.93E-27 884060000 202757 202408 205093 79509 269860 213560 266140 255140 216638 240020 TRUE FALSE FALSE 188544.7813 186368.4529 284510.5022 185100.9702 236011.6425 187213.1385 199548.9571 197050.1917 235416.3563 179917.4297 1.047951728 1.035855465 1.581339299 1.028810663 1.311777535 1.040550317 1.109114094 1.095225693 1.308468872 1 17.45697543 -6.275114545 24.75427034 1.116526057 1.203511647 0.064483008 0.171465591 2366.177655 4283153.839 0.059759661 0.052977649 5.31E-07 6.275114545 0.08698559 S(ph)LGSLPK ddPTM_HeLa_A485_30min_R1 1 SLGSLPK 7 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 0 S(0.999)LGS(0.001)LPK 96.311 0.0041007 0 114920 127560 99160 135950 167540 145990 178780 193960 103340 197180 TRUE FALSE FALSE 140483.5575 142477.0324 135843.4104 143376.6043 150859.1293 153633.8107 140582.1925 146391.0059 124079.3901 148026.6548 0.949042304 0.962509303 0.917695604 0.968586397 1.019134895 1.037879366 0.949708636 0.988950308 0.838223293 1 17.17549746 -1.031006633 21.60447018 0.964990932 0.001992646 0 0.053719507 0 0 0.012343982 0 0.093109366 1.031006633 -0.962998286 S(ph)LGTQPPKK ddPTM_HeLa_A486_30min_R1 1 SLGTQPPKK 9 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R349 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 S(0.994)LGT(0.006)QPPKK 45.879 0.036474 289740000 293890 321650 204430 187080 329120 412280 473430 431950 275700 484680 TRUE FALSE FALSE 273289.8286 296161.2826 283590.7708 435531.6945 287838.7007 361417.0854 354972.8066 333604.4144 299597.898 363312.9733 0.752215992 0.815168476 0.780568798 1.198778262 0.792261003 0.994781667 0.977044126 0.918228742 0.82462758 1 18.47085336 S(ph)LHGPCPVTTFGPK ddPTM_HeLa_A485_30min_R1 1 SLHGPCPVTTFGPK 14 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 S(1)LHGPCPVTTFGPK 142.1 1.68E-05 0 52135 61760 50848 59130 75613 62449 63935 82549 70590 79741 TRUE FALSE FALSE 63732.25089 68982.29476 69658.79116 62360.12217 68084.70423 65718.73308 50274.76495 62303.72832 84756.76551 59863.03622 1.064634454 1.152335383 1.163636119 1.041713319 1.137341313 1.09781824 0.839829854 1.040771271 1.415844749 1 15.86937783 -5.261062256 24.08684125 1.076488208 1.129415318 0.020774044 0.137679521 96.70948289 6176540.97 0.039138024 0.062763131 5.48E-06 5.261062256 0.052927111 S(ph)LHGPCPVTTFGPK ddPTM_HeLa_A486_30min_R1 1 SLHGPCPVTTFGPK 14 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 S(1)LHGPCPVTTFGPK 130.01 1.50E-05 484540000 470540 571350 354710 204480 554350 554100 620270 643070 487850 663280 TRUE FALSE FALSE 437557.5759 526074.1452 492063.2115 476039.7738 484818.2539 485740.7757 465071.8855 496656.9991 530137.2308 497190.3708 0.880060439 1.058093994 0.989687734 0.957459762 0.975115936 0.976971406 0.935400025 0.998927229 1.066266086 1 18.92343883 -7.527234926 22.52373413 1.032954351 0.971786568 0.254815714 0.044660914 52.15706572 269634.9448 0.028369957 0.010853423 2.97E-08 7.527234926 -0.061167783 S(ph)LHLDK ddPTM_HeLa_A485_30min_R1 3 SLHLDK 6 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 S(1)LHLDK;S(1)LHLDK;S(1)LHLDK ;; 90.709 0.011385 531085000 1054400 1139720 896700 1240090 1453800 1347060 1661850 1841210 1128780 1691210 TRUE FALSE FALSE 1288947.642 1273000.34 1228426.645 1307832.977 1309054.567 1417589.979 1306782.171 1389650.361 1355315.792 1269622.471 1.015221195 1.00266053 0.967552696 1.030095959 1.031058127 1.116544493 1.029268307 1.094538252 1.06749512 1 20.27596814 -5.746622735 2.315845838 1.065291929 0.997046708 0.397733217 0.0334083 0.26006935 2.860870773 0.010475865 0.013501999 1.79E-06 5.746622735 -0.068245221 S(ph)LHLDK ddPTM_HeLa_A486_30min_R1 4 SLHLDK 6 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 S(1)LHLDK;S(1)LHLDK;S(1)LHLDK;S(1)LHLDK ;;; 101.54 0.0084451 895260000 2712000 2649550 1627300 978450 2711510 2791790 3208100 3170700 2097650 3514750 TRUE FALSE FALSE 2521902.805 2439590.009 2257434.141 2277881.048 2371407.132 2447367.335 2405399.448 2448800.826 2279475.991 2634633.723 0.95721192 0.925969324 0.856830352 0.864591168 0.900089873 0.928921282 0.912991976 0.929465377 0.865196544 1 21.32917098 -6.213084317 7.712366221 0.921999268 0.897788553 0.085336711 0.040749078 0.883050566 127.2943838 0.013704058 0.013649573 6.12E-07 6.213084317 -0.024210714 S(ph)LHS(ph)AHSLASR ddPTM_HeLa_A485_30min_R1 3 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 0 S(1)LHS(1)AHSLASR;S(1)LHS(1)AHSLASR;S(1)LHS(0.988)AHS(0.012)LASR ;; 153.09 4.55E-07 1272290000 491145 836370 998150 565130 969890 804430 704710 793510 983120 876040 TRUE FALSE FALSE 600398.5108 934176.196 1367407.221 596001.6209 873324.3461 846548.7109 554142.9515 598900.4283 1180423.166 657659.3503 0.912932372 1.420456039 2.079202889 0.906246708 1.327928122 1.28721459 0.842598758 0.910654472 1.7948854 1 19.32698098 S(ph)LHS(ph)AHSLASR ddPTM_HeLa_A486_30min_R1 1 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 0 S(1)LHS(1)AHSLASR 124.16 6.28E-05 766250000 524420 516430 538410 79498 634750 478300 448530 465670 545020 478230 TRUE FALSE FALSE 487660.8661 475506.206 746896.7711 185075.3616 555133.7362 419292.209 336303.0499 359647.1065 592262.7724 358478.0952 1.360364476 1.326458192 2.083521367 0.516280811 1.548584819 1.169645271 0.938141143 1.00326104 1.652158891 1 18.45152544 -5.253689821 24.99512205 1.130993672 1.563748954 0.268655012 0.35550869 862.0527462 2780423.953 0.094042309 0.159100019 5.58E-06 5.253689821 0.432755283 S(ph)LHSAHSLASR ddPTM_HeLa_A485_30min_R1 4 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 S(1)LHSAHSLASR;S(0.999)LHS(0.001)AHSLASR;S(0.985)LHS(0.015)AHSLASR;S(0.997)LHS(0.003)AHSLASR ;;; 226.51 3.01E-18 2998140000 527195 811298 927790 437593 1045078 767407 925369 1057410 862078 676321 TRUE FALSE FALSE 644467.7089 906172.2437 1271018.13 461497.5975 941026.3648 807587.2439 727656.3536 798078.5395 1035089.147 507726.6215 1.269320303 1.784764094 2.503351362 0.908948986 1.853411511 1.590594642 1.43316565 1.571866642 2.038674167 1 18.95369238 -5.265814166 24.99995075 1.526626003 1.845707114 0.13019164 0.425575784 863.5724219 4934936.588 0.11668311 0.179992023 5.42E-06 5.265814166 0.319081111 S(ph)LHSAHSLASR ddPTM_HeLa_A486_30min_R1 4 SLHSAHSLASR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 S(1)LHSAHSLASR;S(1)LHSAHSLASR;S(1)LHSAHSLASR;S(0.997)LHS(0.003)AHSLASR ;;; 202.15 7.71E-15 2495690000 1012574 1072600 1023820 183500 1322380 941304 989611 1088592 996748 808784 TRUE FALSE FALSE 941597.7915 987603.2697 1420270.523 427197.2736 1156514.77 825175.483 741999.8608 840743.3654 1083146.919 606259.2221 1.553127371 1.629011541 2.342678628 0.704644578 1.90762421 1.361093494 1.223898679 1.386772085 1.786606916 1 19.20957526 -5.2494727 24.98882744 1.374637824 1.820346319 0.264663123 0.380386227 1137.805261 2375961.559 0.099574993 0.170772238 5.63E-06 5.2494727 0.445708495 S(ph)LIAQDHR ddPTM_HeLa_A485_30min_R1 2 SLIAQDHR 8 0 E9PB39;H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 E9PB39 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 0 S(1)LIAQDHR;S(1)LIAQDHR ; 139.32 0.00031871 448600000 157844 142763 190630 203880 254240 199376 229130 203319 173577 272710 TRUE FALSE FALSE 192955.8532 159457.891 261151.9698 215017.4481 228926.9729 209815.0191 180174.5037 153454.6965 208412.3118 204728.4159 0.942496685 0.778875225 1.275601966 1.050256982 1.118198331 1.024845614 0.88006593 0.749552503 1.017994062 1 17.64335183 -6.741104394 7.450235978 0.890875933 1.036442954 0.148014188 0.136931551 0.284100027 68.96544076 0.055382812 0.041503509 1.82E-07 6.741104394 0.145567021 S(ph)LIAQDHR ddPTM_HeLa_A486_30min_R1 2 SLIAQDHR 8 0 E9PB39;H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 E9PB39 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 0 S(1)LIAQDHR;S(1)LIAQDHR ; 143 5.04E-05 252700000 157779 282920 247330 97463 314780 345530 361220 369540 267930 293100 TRUE FALSE FALSE 146719.5069 260500.3888 343102.7997 226898.7895 275297.3572 302902.0217 270838.9354 285403.809 291154.3881 219705.8522 0.667799721 1.18567797 1.561646157 1.032738943 1.253026965 1.378670703 1.232734279 1.299026886 1.325200877 1 17.74521377 -4.281127076 4.302709511 1.271593798 0.632373477 0.570515157 0.152725133 0.12625193 5.400077975 0.036194814 0.237612126 5.23E-05 4.281127076 -0.639220321 S(ph)LINMVLDHVEDMEER ddPTM_HeLa_A485_30min_R1 3 SLINMVLDHVEDMEER 16 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 S(1)LINMVLDHVEDMEER;S(1)LINMVLDHVEDMEER;S(1)LINMVLDHVEDMEER ;; 70.281 0.0048284 8865600 8472.4 13490.4 13482.3 9455.8 14578.8 9555.3 14279.6 13554 9326 16732.1 TRUE FALSE FALSE 10357.05615 15067.98493 18469.96382 9972.346411 13127.28348 10055.60073 11228.64681 10229.86025 11197.64266 12561.0954 0.824534471 1.19957571 1.470410281 0.793907386 1.045074738 0.800535336 0.89392258 0.814408292 0.891454312 1 13.61667466 -5.294737946 24.99947937 0.886327023 1.16831394 0.367767692 0.164226734 633.5166064 475622.317 0.046150524 0.068457149 5.07E-06 5.294737946 0.281986917 S(ph)LIVEGK ddPTM_HeLa_A485_30min_R1 4 SLIVEGK 7 0 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 1 0 S(1)LIVEGK;S(1)LIVEGK;S(1)LIVEGK;S(1)LIVEGK ;;; 128.86 0.001701 3741650000 6191800 4699740 3215230 6810400 4587060 4306930 5673500 4253800 3740540 7653300 TRUE FALSE FALSE 7569144.549 5249333.711 4404677.374 7182434.907 4130356.2 4532434.195 4461310.377 3210548.88 4491232.068 5745473.159 1.317410131 0.913646895 0.766634401 1.250103292 0.718888782 0.788870485 0.776491379 0.558796254 0.781699252 1 22.45399428 -5.789829088 24.99960472 0.74991971 1.030261906 0.382948195 0.178086323 228.3708992 201099.2151 0.054568867 0.061886555 1.62E-06 5.789829088 0.280342196 S(ph)LIVEGK ddPTM_HeLa_A486_30min_R1 5 SLIVEGK 7 0 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 1 0 S(1)LIVEGK;S(1)LIVEGK;S(1)LIVEGK;S(1)LIVEGK;S(1)LIVEGK ;;;; 128.86 0.001701 4378280000 8480690 9082610 4091610 2554590 5437030 8270340 8619830 7641300 6641910 10676500 TRUE FALSE FALSE 7886237.425 8362870.905 5675990.969 5947214.622 4755066.999 7250029.537 6463057.363 5901542.798 7217636.107 8003034.908 0.985405851 1.044962443 0.709229815 0.743119915 0.594157973 0.905910023 0.807575806 0.737413102 0.90186238 1 22.93211577 -4.754362398 24.99995508 0.785213706 1.015184241 0.370756561 0.110866542 152.9958885 540455.7073 0.02767503 0.069992275 1.76E-05 4.754362398 0.229970535 S(ph)LIVEGKR ddPTM_HeLa_A485_30min_R1 2 SLIVEGKR 8 1 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 1 0 S(1)LIVEGKR;S(1)LIVEGKR ; 149.96 0.00014126 1439150000 769770 1331370 756660 546720 1040380 1357890 1611420 2079980 709420 804670 TRUE FALSE FALSE 941002.6808 1487062.14 1036580.021 576585.9292 936796.1142 1428987.021 1267126.953 1569861.644 851794.0868 604080.5779 1.557743644 2.461695003 1.715963167 0.954485131 1.550780059 2.365556969 2.09761247 2.598761989 1.410066998 1 19.20438148 -6.229160086 24.39934564 2.007023314 1.658563547 0.028176711 0.549834852 1353.008543 1022714.859 0.18342339 0.183407595 5.90E-07 6.229160086 -0.348459768 S(ph)LIVEGKR ddPTM_HeLa_A486_30min_R1 2 SLIVEGKR 8 1 B4DFG0;H0Y993;P35659;H0Y8X0;A0A494C198;A0A494C028;D6R9L5 B4DFG0 DEK Protein DEK 1 0 S(1)LIVEGKR;S(1)LIVEGKR ; 133.81 0.00029682 848800000 845100 645710 388020 275410 651540 543140 761980 774890 411050 1008480 TRUE FALSE FALSE 785862.8541 594541.588 538271.7355 641168.3985 569817.7778 476132.909 571324.5446 598464.4627 446680.145 755950.0439 1.039569824 0.786482642 0.712046702 0.848162393 0.753777029 0.629847055 0.755770238 0.791671973 0.590885798 1 19.52793137 -4.268028024 3.732757639 0.750678026 1.068164391 0.373388422 0.107268883 0.248537185 6.629234904 0.025381869 0.216419431 5.39E-05 4.268028024 0.317486366 S(ph)LIYTDTLVR ddPTM_HeLa_A485_30min_R1 2 SLIYTDTLVR 10 0 Q5SYE7-2 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 S(1)LIYTDTLVR;S(1)LIYTDTLVR ; 142.71 6.21E-06 115842000 80749 110975 73276 67422 90759 89259 122682 117867 84182 141312 TRUE FALSE FALSE 98711.33647 123952.5609 100383.8417 71105.09314 81722.71529 93932.46322 96469.98848 88959.93344 101076.5552 106085.5191 0.930488321 1.168421119 0.946253952 0.670262009 0.770347508 0.885440954 0.909360574 0.838568112 0.952783718 1 16.69486821 -4.998456611 24.99035211 0.850020065 1.051425481 0.348428385 0.102438217 49.99529868 809451.9502 0.026693952 0.054921367 1.00E-05 4.998456611 0.201405416 S(ph)LIYTDTLVR ddPTM_HeLa_A486_30min_R1 1 SLIYTDTLVR 10 0 Q5SYE7-2 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 S(0.998)LIYT(0.001)DTLVR 60.49 0.029069 76041000 44281 49690 24968 11450 55109 33710 47075 39352 33653 42979 TRUE FALSE FALSE 41177.13057 45752.38343 34636.27827 26656.17865 48196.71535 29551.20294 35296.33709 30392.40865 36570.06914 32216.77865 1.278126873 1.420141471 1.075100606 0.827400496 1.496012865 0.917261259 1.095588652 0.943372054 1.135124946 1 14.97552463 -4.772165869 24.33171222 1.062472002 1.349134146 0.307234564 0.17291869 155.1581594 351960.3825 0.043603189 0.092341919 1.69E-05 4.772165869 0.286662144 S(ph)LKEGLTVQER ddPTM_HeLa_A485_30min_R1 4 SLKEGLTVQER 11 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;Q6WCQ1-2;J3KSW8;Q6WCQ1-3 A0A494BZV2;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)LKEGLTVQER;S(1)LKEGLTVQER;S(1)LKEGLTVQER;S(1)LKEGLTVQER ;;; 148.7 3.58E-07 943220000 752152 687264 631893 1037880 1396230 876730 1454250 1484580 789723 1459660 TRUE FALSE FALSE 919465.6175 767633.5464 865656.516 1094576.756 1257216.439 922634.2271 1143537.607 1120484.427 948213.1623 1095793.625 0.839086482 0.70052748 0.78998134 0.998889509 1.147311328 0.841978093 1.043570232 1.022532347 0.865320933 1 20.06354469 -5.235766175 5.616559858 0.992565562 0.766441361 0.55250874 0.08735642 0.12936286 13.24965834 0.02361545 0.040091895 5.81E-06 5.235766175 -0.226124201 S(ph)LKEGLTVQER ddPTM_HeLa_A486_30min_R1 3 SLKEGLTVQER 11 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;Q6WCQ1-2;J3KSW8;Q6WCQ1-3 A0A494BZV2;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)LKEGLTVQER;S(1)LKEGLTVQER;S(1)LKEGLTVQER ;; 169.37 1.88E-08 774690000 654280 759140 530297 514551 1072260 944690 1328230 1407990 563093 1065230 TRUE FALSE FALSE 608418.3507 698982.9817 735642.2002 1197900.732 937767.1524 828143.7527 995892.8054 1087421.413 611902.3546 798489.4745 0.761961641 0.875381585 0.921292295 1.500208544 1.174426442 1.03713797 1.247220956 1.361848149 0.766324885 1 19.60691386 -5.020371469 23.7457034 1.173216773 0.838587775 0.346791149 0.192169546 395.8244511 461389.1815 0.050786928 0.089540861 9.54E-06 5.020371469 -0.334628998 S(ph)LLAGLSLPSR ddPTM_HeLa_A485_30min_R1 4 SLLAGLSLPSR 11 0 Q8N201;H7C582 Q8N201 INTS1 Integrator complex subunit 1 1 0 S(0.999)LLAGLS(0.001)LPSR;S(1)LLAGLSLPSR;S(0.973)LLAGLS(0.026)LPS(0.001)R;S(0.999)LLAGLS(0.001)LPSR ;;; 96.82 0.0013451 773420000 342153 1136160 1563320 85922 1052170 691450 426613 523933 1054110 142125 TRUE FALSE FALSE 418263.7544 1269024.029 2141657.123 90615.70129 947412.2604 727653.2528 335463.6474 395437.6103 1265660.208 106695.8531 3.920150055 11.89384584 20.07254322 0.849289814 8.87956029 6.819883168 3.144111394 3.706213491 11.86231865 1 16.70314458 -5.28252488 24.99881845 5.430579428 11.9553487 0.29081986 4.842206526 1025.635541 1215983.764 1.355265229 2.012446681 5.22E-06 5.28252488 6.524769272 S(ph)LLAGLSLPSR ddPTM_HeLa_A486_30min_R1 1 SLLAGLSLPSR 11 0 Q8N201;H7C582 Q8N201 INTS1 Integrator complex subunit 1 1 0 S(1)LLAGLSLPSR 93.011 0.0017355 380440000 133620 246690 387230 9124.4 337460 88555 59897 115520 224190 18963 TRUE FALSE FALSE 124253.928 227141.386 537175.8264 21242.06432 295132.6201 77629.98446 44910.13707 89218.61778 243622.9697 14214.54137 8.741325152 15.97950859 37.79058447 1.494389707 20.76272547 5.461307715 3.159450305 6.276573788 17.13899614 1 13.79507993 -6.269366689 24.49726931 6.721562378 17.19833799 0.226612775 9.550393774 732.2577419 2262842.921 3.330114151 2.990597348 5.38E-07 6.269366689 10.47677562 S(ph)LLDASEEAIK ddPTM_HeLa_A485_30min_R1 6 SLLDASEEAIK 11 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK ;;;;; 218.06 8.81E-18 302733000 677389 435559 342729 894342 591993 438064 709547 510159 449617 1066829 TRUE FALSE FALSE 828071.8461 486493.8362 469518.7192 943197.6389 533052.0983 461000.3537 557946.487 385041.7054 539851.0078 800888.1638 1.03394192 0.607442909 0.586247544 1.177689572 0.665576197 0.575611396 0.696659674 0.48076838 0.674065409 1 19.61124127 -5.959261472 24.99999253 0.649994896 0.828307604 0.12333006 0.207643589 298.4499321 183148.3192 0.063399765 0.071888513 1.10E-06 5.959261472 0.178312708 S(ph)LLDASEEAIK ddPTM_HeLa_A486_30min_R1 5 SLLDASEEAIK 11 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK;S(1)LLDASEEAIK ;;;; 252.84 3.53E-27 369088000 642920 788536 390055 363429 635781 991719 1066354 899924 626958 933548 TRUE FALSE FALSE 597854.628 726049.5356 541094.742 846081.0787 556035.4186 869370.7928 799540.9505 695030.9504 681303.2242 699781.5044 0.854344712 1.037537476 0.773233843 1.209064649 0.794584331 1.242346057 1.142557992 0.993211375 0.973594215 1 19.41654501 -5.254945287 24.98842089 1.05161565 0.903288571 0.228228222 0.136014334 846.5377728 3257359.356 0.036119948 0.060694162 5.56E-06 5.254945287 -0.148327079 S(ph)LLDASEEAIKK ddPTM_HeLa_A485_30min_R1 6 SLLDASEEAIKK 12 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK ;;;;; 238.02 6.24E-28 9499350000 5355240 2985453 1980941 7404880 4698700 4275140 7890620 6382230 3638660 9471380 TRUE FALSE FALSE 6546494.663 3334575.758 2713773.51 7809389.844 4230880.93 4498979.72 6204724.577 4816978.086 4368905.686 7110339.274 0.920700744 0.468975618 0.381665826 1.098314658 0.595032215 0.6327377 0.872634109 0.677461075 0.614444054 1 22.76148697 -11.2641507 2.169406144 2.154321001 0.691550561 0.166814759 0.203775596 20257272.74 3054484.298 114662194.2 0.050234372 5.44E-12 11.2641507 -1.46277044 S(ph)LLDASEEAIKK ddPTM_HeLa_A486_30min_R1 7 SLLDASEEAIKK 12 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK;S(1)LLDASEEAIKK ;;;;;; 249.6 1.23E-28 10278740000 12269030 12800170 5177567 7589144 10472993 18309060 22340910 18972960 9795439 20299070 TRUE FALSE FALSE 11409034.35 11785837.91 7182459.602 17667910.77 9159372.561 16050274.33 16750978.02 14653231.18 10644515.54 15216050.75 0.749802596 0.774566154 0.472031785 1.161136425 0.601954654 1.054825237 1.100875536 0.963011456 0.699558362 1 23.85909063 -5.2586556 24.99997267 0.936031326 0.676376789 0.329816662 0.179190949 305.5302665 2743827.182 0.048759753 0.079824939 5.51E-06 5.2586556 -0.259654537 S(ph)LLDRAEER ddPTM_HeLa_A485_30min_R1 2 SLLDRAEER 9 1 P02549-2;P02549 P02549-2 SPTA1 "Spectrin alpha chain, erythrocytic 1" 1 0 S(1)LLDRAEER;S(1)LLDRAEER ; 71.03 0.0069117 528130000 132714 313380 388500 28678 284300 208941 137133 172312 275170 49559 TRUE FALSE FALSE 162235.7714 350027.065 532222.3168 30244.60652 255994.0938 219880.8277 107833.4143 130052.2118 330394.095 37204.85337 4.360607737 9.408102258 14.30518518 0.812920998 6.880663962 5.910003878 2.898369555 3.495571144 8.880403095 1 15.18320321 -5.270660189 24.99120905 4.492433762 9.362978931 0.338357767 3.250988916 756.9355757 2051525.351 0.903243334 1.361082225 5.36E-06 5.270660189 4.870545169 S(ph)LLDRAEER ddPTM_HeLa_A486_30min_R1 2 SLLDRAEER 9 1 P02549-2;P02549 P02549-2 SPTA1 "Spectrin alpha chain, erythrocytic 1" 1 0 S(1)LLDRAEER;S(1)LLDRAEER ; 79.659 0.004095 217510000 174102 266161 358640 9080.8 326810 121663 81407 133197 258830 25185 TRUE FALSE FALSE 161898.3489 245069.433 497515.0127 21140.56132 285818.4424 106653.456 61038.10756 102870.9508 281265.5928 18878.51207 8.575800266 12.98139557 26.35350767 1.119821373 15.13988186 5.649463031 3.23320542 5.449102682 14.89871615 1 14.20445744 -5.283118619 24.99996267 6.997593053 15.67135392 0.318081151 6.239560177 983.1363519 1133726.25 1.738605377 2.581293083 5.21E-06 5.283118619 8.673760869 S(ph)LLGIDTEDAIQGR ddPTM_HeLa_A485_30min_R1 3 SLLGIDTEDAIQGR 14 0 P49454 P49454 CENPF Centromere protein F 1 0 S(1)LLGIDTEDAIQGR;S(1)LLGIDTEDAIQGR;S(1)LLGIDTEDAIQGR ;; 284.45 2.39E-49 936265000 329298 367196 335184 349626 484033 350445 426218 472435 310753 396400 TRUE FALSE FALSE 402549.204 410136.378 459182.5098 368725.1831 435840.975 368793.7583 335153.0424 356569.5755 373118.2767 297584.7752 1.352721099 1.378216939 1.543030921 1.239059299 1.464594332 1.239289739 1.126243916 1.198211754 1.253821794 1 18.18294119 -6.450867712 4.35591184 1.162616542 1.393271201 0.606208292 0.095364054 0.161610096 5.824990291 0.033919336 0.028989906 3.54E-07 6.450867712 0.230654659 S(ph)LLGIDTEDAIQGR ddPTM_HeLa_A486_30min_R1 4 SLLGIDTEDAIQGR 14 0 P49454 P49454 CENPF Centromere protein F 1 0 S(1)LLGIDTEDAIQGR;S(1)LLGIDTEDAIQGR;S(1)LLGIDTEDAIQGR;S(1)LLGIDTEDAIQGR ;;; 290.38 8.05E-58 1288140000 480058 458872 348642 166542 485581 439006 479269 499684 388379 490074 TRUE FALSE FALSE 446408.4132 422509.3115 483645.5194 387718.1926 424674.9031 384845.9032 359350.827 385916.8612 422044.0044 367356.2806 1.215192 1.150134989 1.3165571 1.05542824 1.15603006 1.047609429 0.978207931 1.05052474 1.148868351 1 18.48682041 -5.63826795 1.479196053 1.049273837 1.215939982 0.50513661 0.069928206 0.337401529 1.523349444 0.025047287 0.038723011 2.30E-06 5.63826795 0.166666145 S(ph)LLKKPDGVK ddPTM_HeLa_A486_30min_R1 1 SLLKKPDGVK 10 2 H0Y9J2;E9PBG7;E9PF82;Q13557-11;Q13557;Q13557-6;Q13557-10;Q13557-8;Q13557-12;D6R938;Q13557-5;Q13557-9;Q13557-4;Q13557-3;H0Y9C2 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 S(1)LLKKPDGVK 68.513 0.006675 235960000 425560 329970 93120 311390 268850 559370 831130 890540 286160 623910 TRUE FALSE FALSE 395730.4416 303821.9755 129178.5578 724931.6568 235128.3261 490360.6167 623172.4832 687783.4824 310964.5792 467678.875 0.846158471 0.649638014 0.276212086 1.550062865 0.502755926 1.048498538 1.332479435 1.470631921 0.664910467 1 18.83515874 -5.250921461 24.99904162 1.085932645 0.596566401 0.311276001 0.334376454 891.2579034 2118342.137 0.09065962 0.154962869 5.61E-06 5.250921461 -0.489366244 S(ph)LLLTDISMENVPMDTYPIHHGDPSYR ddPTM_HeLa_A485_30min_R1 1 SLLLTDISMENVPMDTYPIHHGDPSYR 27 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6;J3KSX8 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(0.983)LLLT(0.016)DISMENVPMDTYPIHHGDPSYR 112.88 0.00020903 39632000 4872.6 6386.8 4963.9 2437.5 7078 6666.4 7405.9 8984.7 5684.5 6163.5 TRUE FALSE FALSE 5956.49306 7133.680702 6800.253175 2570.654453 6373.289468 7015.442396 5823.568964 6781.188238 6825.327009 4627.052881 1.287318994 1.541733126 1.469672673 0.55557058 1.377397154 1.516179429 1.2585914 1.465552353 1.475091637 1 12.17587787 S(ph)LLLTDISMENVPMDTYPIHHGDPSYR ddPTM_HeLa_A486_30min_R1 1 SLLLTDISMENVPMDTYPIHHGDPSYR 27 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6;J3KSX8 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(0.985)LLLT(0.015)DISMENVPMDTYPIHHGDPSYR 122.73 1.07E-05 32498000 4150.4 5055.1 4575.4 1080.4 6571 6005.2 3931.4 6706.6 4754.4 6230.2 TRUE FALSE FALSE 3859.478393 4654.515466 6347.117413 2515.2258 5746.803908 5264.33948 2947.722138 5179.653584 5166.51522 4670.117368 0.826419999 0.996659205 1.359091627 0.538578713 1.230548069 1.127239224 0.631188021 1.109105655 1.106292372 1 12.18924309 -4.268857116 6.711373624 1.009366827 0.823648247 0.051175678 0.238599655 0.368673057 110.3361597 0.057586576 0.309496644 5.38E-05 4.268857116 -0.185718581 S(ph)LLRPGQAAELR ddPTM_HeLa_A485_30min_R1 4 SLLRPGQAAELR 12 1 Q96BY6;F8WB48;F8WE73;Q96BY6-2 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 S(1)LLRPGQAAELR;S(1)LLRPGQAAELR;S(1)LLRPGQAAELR;S(1)LLRPGQAAELR ;;; 163.91 1.26E-10 898560000 1278480 1300520 1220690 1077350 1327190 1006390 1448280 1555200 1156270 1412700 TRUE FALSE FALSE 1562873.465 1452604.501 1672274.028 1136202.903 1195050.304 1059083.024 1138843.147 1173784.762 1388322.783 1060539.889 1.473658352 1.369683985 1.576813891 1.071343864 1.126832018 0.998626299 1.073833392 1.106780399 1.309071726 1 20.01636745 -5.269856543 24.99170137 1.098563954 1.463015269 0.77050749 0.093813214 278.6061698 827219.2434 0.026240208 0.039637004 5.37E-06 5.269856543 0.364451315 S(ph)LLRPGQAAELR ddPTM_HeLa_A486_30min_R1 4 SLLRPGQAAELR 12 1 Q96BY6;F8WB48;F8WE73;Q96BY6-2 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 S(1)LLRPGQAAELR;S(1)LLRPGQAAELR;S(1)LLRPGQAAELR;S(1)LLRPGQAAELR ;;; 145.69 9.15E-08 1435110000 1340090 1167245 723426 395037 949314 1082823 1173104 1455570 796973 969921 TRUE FALSE FALSE 1246156.611 1074748.255 1003555.921 919666.1001 830242.1861 949235.3076 879580.9714 1124168.486 866055.2613 727046.4685 1.713998575 1.47823874 1.380318817 1.264934416 1.14193827 1.305604729 1.209800212 1.546212704 1.191196573 1 19.47168805 -4.403317632 1.257617894 1.25800552 1.841722938 0.562759219 0.132423598 0.861640152 1.433197744 0.039471026 0.611023713 3.95E-05 4.403317632 0.583717418 S(ph)LLTKR ddPTM_HeLa_A485_30min_R1 1 SLLTKR 6 1 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 S(1)LLTKR 131.06 0.0049952 0 60505 68545 47442 40457 75713 61131 94014 134570 54480 61495 TRUE FALSE FALSE 73964.12851 76560.74149 64992.77003 42667.06347 68174.74788 64331.72463 73927.14088 101566.4965 65413.63628 46165.42823 1.602154065 1.658399898 1.407823398 0.924221113 1.476748955 1.393504341 1.601352867 2.200055331 1.416939879 1 15.49452525 -6.818730685 5.286558471 1.659860571 1.402308203 0.006374121 0.335749871 0.472739575 26.90408461 0.142310184 0.096319902 1.52E-07 6.818730685 -0.257552368 S(ph)LNLEDYKK ddPTM_HeLa_A485_30min_R1 4 SLNLEDYKK 9 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 1 0 S(1)LNLEDYKK;S(1)LNLEDYKK;S(1)LNLEDYKK;S(1)LNLEDYKK ;;; 138.42 9.11E-05 1952020000 1866560 1395960 797910 2603290 2055980 1934930 2924750 3009120 1312870 3418080 TRUE FALSE FALSE 2281769.832 1559205.379 1093090.113 2745501.141 1851279.412 2036239.943 2299853.269 2271128.602 1576350.967 2566015.561 0.88922681 0.607636759 0.425987328 1.069947191 0.721460711 0.793541541 0.896274093 0.885079824 0.614318553 1 21.29109849 -5.258890952 24.99928867 0.843259242 0.637618963 0.267685219 0.161005789 315.0541174 3090568.226 0.043515242 0.071115181 5.51E-06 5.258890952 -0.20564028 S(ph)LNLEDYKK ddPTM_HeLa_A486_30min_R1 3 SLNLEDYKK 9 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 1 0 S(1)LNLEDYKK;S(1)LNLEDYKK;S(1)LNLEDYKK ;; 157.52 1.66E-05 1818870000 2683330 2352420 975860 1382460 2197360 3144250 3988090 3668250 1874510 4269950 TRUE FALSE FALSE 2495242.424 2166005.672 1353739.126 3218436.746 1921746.619 2756344.403 2990227.7 2833069.552 2036994.036 3200726.727 0.779586212 0.676723087 0.422947425 1.005533124 0.600409464 0.861162054 0.93423399 0.885133219 0.636416105 1 21.60996808 -5.730218773 1.177333807 0.851808067 0.657265121 0.180607455 0.164865049 0.83202913 2.432871564 0.067150947 0.102020429 1.86E-06 5.730218773 -0.194542946 S(ph)LNPALDGLTCGLTSHDKR ddPTM_HeLa_A485_30min_R1 4 SLNPALDGLTCGLTSHDKR 19 1 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR ;;; 220.05 9.46E-35 2310520000 1258500 1240510 992270 1251630 1684430 1450570 2150320 2180650 1126850 1755380 TRUE FALSE FALSE 1538448.983 1385576.853 1359351.965 1320003.378 1516722.235 1526519.602 1690886.566 1645842.168 1352998.459 1317796.071 1.167440863 1.051434955 1.031534389 1.001674998 1.150953678 1.158388339 1.283117018 1.248935404 1.026713077 1 20.3296957 -5.883911712 6.98210799 1.166218675 1.060282674 0.138147454 0.091389309 0.338034308 19.35391594 0.028579313 0.032507171 1.31E-06 5.883911712 -0.105936001 S(ph)LNPALDGLTCGLTSHDKR ddPTM_HeLa_A486_30min_R1 4 SLNPALDGLTCGLTSHDKR 19 1 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR ;;; 212.82 2.48E-26 2518220000 1968450 2231750 1465390 753460 2280700 2232340 2774360 2741010 1762790 2418080 TRUE FALSE FALSE 1830471.82 2054898.002 2032828.253 1754092.958 1994633.339 1956936.588 2080185.784 2116941.859 1915590.057 1812577.029 1.009872569 1.133688648 1.121512752 0.967734297 1.100440592 1.079643268 1.147639935 1.167918287 1.056832359 1 20.78961088 -5.95299289 24.99999713 1.102875452 1.063862614 0.046276852 0.06311282 339.5378542 180576.5422 0.019639519 0.022269114 1.11E-06 5.95299289 -0.039012838 S(ph)LPAFPTSSLLTQSQK ddPTM_HeLa_A485_30min_R1 1 SLPAFPTSSLLTQSQK 16 0 Q99698 Q99698 LYST Lysosomal-trafficking regulator 1 0 S(1)LPAFPTSSLLTQSQK 136.48 7.09E-06 78949000 74273 70528 68255 95252 87506 82440 94485 85074 66473 123880 TRUE FALSE FALSE 90794.77261 78775.63609 93505.36483 100455.3756 78793.59539 86756.43092 74297.50788 64209.46811 79813.52137 92998.99584 0.976298419 0.847058996 1.005444887 1.080176992 0.847252109 0.932874921 0.79890656 0.690431843 0.858219174 1 16.50492752 -6.410852399 1.790923096 0.815448342 0.961871896 0.220053396 0.097474493 0.457423194 2.914914033 0.043374776 0.035552257 3.88E-07 6.410852399 0.146423554 S(ph)LPAGDALYLSFNPPQPSR ddPTM_HeLa_A485_30min_R1 2 SLPAGDALYLSFNPPQPSR 19 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(1)LPAGDALYLSFNPPQPSR;S(1)LPAGDALYLSFNPPQPSR ; 214.46 1.12E-26 213875000 77357 114526 117538 60134 135839 99149 122230 127008 119136 105181 TRUE FALSE FALSE 94564.79777 127918.8195 161020.1974 63418.96815 122314.3922 104340.2883 96114.56197 95859.08886 143045.5024 78961.31241 1.197609245 1.620018912 2.03922899 0.803165072 1.549042037 1.32141026 1.217236125 1.214000704 1.811589727 1 16.26885835 -5.253790956 24.99521366 1.293792535 1.619058972 0.194062903 0.320538575 1029.367857 3363987.424 0.085309916 0.144208765 5.57E-06 5.253790956 0.325266437 S(ph)LPAGDALYLSFNPPQPSR ddPTM_HeLa_A486_30min_R1 1 SLPAGDALYLSFNPPQPSR 19 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(1)LPAGDALYLSFNPPQPSR 258.89 4.43E-58 178060000 25436 26079 24966 10341 34231 28308 28865 30727 22813 32396 TRUE FALSE FALSE 23653.06775 24012.40506 34633.50381 24074.37061 29937.42879 24815.64677 21642.6717 23731.13287 24790.44921 24283.83074 0.974025392 0.988822782 1.426196064 0.991374502 1.23281327 1.021900006 0.891237957 0.977240087 1.020862379 1 14.5677084 -6.510516515 23.09554562 0.96845707 1.12504016 0.229940347 0.130888605 321.4386634 600527.8407 0.047579867 0.039838304 3.09E-07 6.510516515 0.156583091 S(ph)LPALR ddPTM_HeLa_A486_30min_R1 2 SLPALR 6 0 O00268;V9GY14;A0A0G2JRY5;Q8IV20 O00268 TAF4;LACC1 Transcription initiation factor TFIID subunit 4;Laccase domain-containing protein 1 1 0 S(1)LPALR;S(1)LPALR ; 108 0.0095721 156790000 83222 85835 57246 19035.1 63167 64070 66235 61554 64812 85393 TRUE FALSE FALSE 77388.56756 79033.12199 79413.1843 44314.67478 55244.00585 56165.69482 49662.30244 47539.49791 70429.95634 64010.03698 1.209006762 1.234698896 1.240636438 0.69230822 0.863052241 0.877451373 0.7758518 0.742688181 1.100295511 1 15.96601052 -5.247169307 24.85990663 0.850582734 1.22877257 0.682690718 0.113314939 396.4337491 690626.4149 0.029755414 0.051218475 5.66E-06 5.247169307 0.378189836 S(ph)LPAPQDNDFLSR ddPTM_HeLa_A485_30min_R1 2 SLPAPQDNDFLSR 13 0 O43353-2;O43353 O43353-2 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 1 0 S(1)LPAPQDNDFLSR;S(1)LPAPQDNDFLSR ; 118.51 0.00013377 109790000 37987 41013 51615 35701.4 62546 50610 54412 54247 44447 56474 TRUE FALSE FALSE 46437.0771 45809.11358 70709.53638 37651.67708 56318.70063 53259.86134 42786.43169 40942.83819 53367.10521 42396.07113 1.095315577 1.080503744 1.66783229 0.888093545 1.328394333 1.256245212 1.00920747 0.965722462 1.258774782 1 15.37164295 -6.758639885 24.97840544 1.055569707 1.223362648 0.130506847 0.203341727 150.9597752 1346952.289 0.078283687 0.057888303 1.74E-07 6.758639885 0.167792941 S(ph)LPAS(ph)PSTSDFCQTR ddPTM_HeLa_A485_30min_R1 1 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 2 0 S(1)LPAS(0.881)PS(0.099)T(0.012)S(0.009)DFCQTR 138.39 1.08E-05 132200000 80916 102630 110950 100990 126760 91224 115710 136180 103890 122850 TRUE FALSE FALSE 98915.48504 114631.6857 151995.022 106506.828 114139.3293 96000.34758 90987.61324 102781.6415 124739.7701 92225.75589 1.072536452 1.242946557 1.648075644 1.154849065 1.237607957 1.040927739 0.986574871 1.114457024 1.352548091 1 16.49288209 -5.806840343 2.279579443 1.104711209 1.313420948 0.201703834 0.169883396 0.477050699 5.083333409 0.059333937 0.073581696 1.56E-06 5.806840343 0.208709739 S(ph)LPAS(ph)PSTSDFCQTR ddPTM_HeLa_A486_30min_R1 1 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 2 0 S(1)LPAS(0.743)PS(0.102)T(0.136)S(0.019)DFCQTR 134.14 2.56E-05 97966000 181920 173020 149910 77346 241320 168650 201680 191370 152880 192250 TRUE FALSE FALSE 169168.3474 159309.2651 207959.1667 180065.3969 211051.3954 147843.6777 151217.5308 147799.2286 166131.7615 144109.3487 1.17388878 1.105474881 1.443065066 1.249505313 1.464522582 1.025913163 1.049324921 1.025604723 1.152817378 1 17.1368044 -6.289498956 24.93707629 1.052244355 1.2837453 0.54371885 0.108323747 588.494864 523004.5663 0.039022615 0.034422068 5.13E-07 6.289498956 0.231500946 S(ph)LPASPSTS(ph)DFCQTR ddPTM_HeLa_A485_30min_R1 1 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 2 0 S(1)LPAS(0.2)PS(0.2)T(0.26)S(0.34)DFCQTR 130.06 3.99E-05 119980000 66040 73276 78120 79404 110510 72808 105580 102380 70999 100850 TRUE FALSE FALSE 80730.37016 81844.99078 107019.8388 83741.63946 99507.23638 76620.1143 83021.97049 77271.14447 85247.84806 75709.95101 1.066311219 1.081033466 1.413550497 1.106084978 1.314321764 1.012021713 1.096579371 1.020620717 1.125979438 1 16.20819531 -6.28180218 24.80716841 1.055175232 1.196920828 0.319163657 0.105961973 959.4608971 1168868.395 0.037023535 0.032687539 5.23E-07 6.28180218 0.141745596 S(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_HeLa_A485_30min_R1 4 SLPEEDVAEIQHAEEFLIKPESK 23 1 O60832;O60832-2;H7C2Q9;H7C0M1;C9IYT0 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK ;;; 222.95 2.09E-38 1675620000 168503 132528.5 77979.9 237514.1 189575.9 170707.4 259885.4 271758.7 139538.6 319856.6 TRUE FALSE FALSE 205985.911 148026.5552 106827.91 250488.8939 170701.0578 179645.3755 204358.7612 205109.4527 167542.7171 240122.2361 0.857837718 0.616463338 0.444889702 1.043172419 0.710892338 0.748141357 0.851061378 0.854187667 0.697739284 1 17.87340948 -14 0.095341663 1.773567428 0.577696637 0.192670883 0.151903066 322.9906597 2.11255626 50.23189121 3.019949399 1.00E-14 14 -1.19587079 S(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_HeLa_A486_30min_R1 6 SLPEEDVAEIQHAEEFLIKPESK 23 1 O60832;O60832-2;H7C2Q9;H7C0M1;C9IYT0 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK ;;;;; 295.01 2.63E-89 1414201000 316000 270569 139633.6 163325.6 283093 349403 450382 434588 247698.6 442881 TRUE FALSE FALSE 293850.0318 249128.127 193703.4694 380230.2508 247584.8362 306297.2103 337691.6599 335641.7994 269169.3141 331980.7149 0.885141873 0.750429515 0.583478078 1.14533837 0.745780779 0.922635552 1.017202641 1.011028003 0.810798043 1 18.34073991 -5.253777177 24.99990291 0.943958216 0.740757806 0.37232145 0.12517811 654.8402631 2136579.311 0.033594016 0.056801968 5.57E-06 5.253777177 -0.203200409 S(ph)LPELDR ddPTM_HeLa_A485_30min_R1 2 SLPELDR 7 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 S(1)LPELDR;S(1)LPELDR ; 113.66 0.0026741 168605000 140192 182518 138898 126188 146044 150013 152974 163709 124620 160388 TRUE FALSE FALSE 171377.2267 203861.8924 190282.1502 133081.3309 131503.3466 157867.4487 120289.8552 123559.1111 149630.0909 120406.2233 1.423325323 1.693117571 1.580334845 1.105269539 1.092164034 1.311123664 0.999033537 1.026185422 1.242710607 1 16.87755044 -5.2608611 24.80843791 1.114915284 1.578345109 0.773208929 0.112762998 20.42123415 876056.4545 0.030673867 0.049304454 5.48E-06 5.2608611 0.463429825 S(ph)LPELDR ddPTM_HeLa_A486_30min_R1 2 SLPELDR 7 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 S(1)LPELDR;S(1)LPELDR ; 121.85 0.0011584 70579000 140670 142115 101573 31999 124777 112088 121383 104479 134016 165907 TRUE FALSE FALSE 130809.7594 130853.2898 140904.7858 74495.28914 109126.3052 98259.72219 91011.68954 80691.41246 145632.6148 124362.8073 1.051839873 1.0521899 1.133013872 0.599015821 0.877483449 0.790105372 0.73182402 0.648838782 1.171030294 1 16.92419556 -5.23759978 24.97785452 0.812631019 1.076332116 0.334605078 0.158636414 824.3106978 863667.4593 0.041238723 0.071379552 5.79E-06 5.23759978 0.263701096 S(ph)LPGSPEFLHQEACPFVGR ddPTM_HeLa_A485_30min_R1 1 SLPGSPEFLHQEACPFVGR 19 0 Q96S53-3;Q96S53-2;Q96S53 Q96S53-3 TESK2 Dual specificity testis-specific protein kinase 2 1 0 S(0.996)LPGS(0.004)PEFLHQEACPFVGR 83.039 0.0012025 49495000 19776 30214 26952 21462 36559 21211 25347 29749 24580 32428 TRUE FALSE FALSE 24175.10297 33747.26447 36922.66637 22634.41472 32919.05759 22321.57516 19931.40638 22453.01111 29512.98054 24344.29639 0.993049977 1.386249326 1.516686528 0.929762535 1.352228755 0.916911904 0.818730025 0.922310949 1.212316021 1 14.57129618 -6.269906633 24.76911138 0.959490466 1.242590543 0.322513806 0.188809272 658.6188185 1926640.512 0.066586392 0.059669681 5.37E-07 6.269906633 0.283100076 S(ph)LPGSPEFLHQEACPFVGR ddPTM_HeLa_A486_30min_R1 2 SLPGSPEFLHQEACPFVGR 19 0 Q96S53-3;Q96S53-2;Q96S53 Q96S53-3 TESK2 Dual specificity testis-specific protein kinase 2 1 0 S(1)LPGSPEFLHQEACPFVGR;S(0.999)LPGS(0.001)PEFLHQEACPFVGR ; 137.12 1.11E-06 102397000 32814 40212 28198 14599.2 45592 37216 44461 42855 33390 40350 TRUE FALSE FALSE 30513.90805 37025.45467 39117.02077 33987.6754 39873.42623 32624.6683 33336.38754 33097.85202 36284.27208 30246.09737 1.008854388 1.224139902 1.293291505 1.12370449 1.31829987 1.07864059 1.102171534 1.094285045 1.199634837 1 14.88446138 -6.365992614 20.22582136 1.101286539 1.197217412 0.218844773 0.092734948 12.1211097 2333.274857 0.031816905 0.028059803 4.31E-07 6.365992614 0.095930874 S(ph)LPITIEMLK ddPTM_HeLa_A485_30min_R1 2 SLPITIEMLK 10 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 S(1)LPITIEMLK;S(1)LPITIEMLK ; 224.66 4.10E-17 285860000 216261 153065 126493 260220 175641 153218 206934 145518 153242 337160 TRUE FALSE FALSE 264367.5134 170964.6203 173288.0245 274435.1597 158153.5653 161240.2576 162720.8604 109829.4823 183996.2638 253112.217 1.044467614 0.675449895 0.684629239 1.08424304 0.624835763 0.637030719 0.64288031 0.433916164 0.726935531 1 17.94941762 -4.257970474 23.81036714 0.707415532 1.044467863 0.220398828 0.178960006 264.1192433 1812733.159 0.045202804 0.318088881 5.52E-05 4.257970474 0.337052331 S(ph)LPITIEMLK ddPTM_HeLa_A486_30min_R1 3 SLPITIEMLK 10 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 S(1)LPITIEMLK;S(1)LPITIEMLK;S(1)LPITIEMLK ;; 197.3 1.14E-13 320600000 220557 221713 116778 73317.6 153025 209732 207538 203076 184650 231782 TRUE FALSE FALSE 205097.0933 204143.6544 161997.569 170687.0781 133831.1776 183857.3982 155609.7973 156840.0279 200655.6107 173742.2786 1.180467385 1.174979724 0.932401545 0.982415331 0.770285613 1.058219103 0.895635758 0.902716536 1.154903759 1 17.40658934 -4.757701428 24.84407743 0.953535893 1.177723673 0.438646365 0.097199769 71.95309329 478210.3853 0.024152606 0.0589817 1.75E-05 4.757701428 0.22418778 S(ph)LPNLSR ddPTM_HeLa_A485_30min_R1 5 SLPNLSR 7 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 S(1)LPNLSR;S(1)LPNLSR;S(0.999)LPNLS(0.001)R;S(0.999)LPNLS(0.001)R;S(1)LPNLSR ;;;; 120.33 0.0020406 1972440000 767131 973977 919462 680647 1272810 956060 1081775 1290670 911763 920019 TRUE FALSE FALSE 937776.6444 1087875.138 1259609.256 717829.0221 1146084.567 1006117.823 850644.934 974131.1588 1094745.471 690675.195 1.357767951 1.575089341 1.823736056 1.039314901 1.659368362 1.456716313 1.231613557 1.410404146 1.585036612 1 19.39764789 -12.15487928 0.278088056 1.49E-13 1.496128882 0.290998955 0.211905651 92.0283589 2.246600861 54.1701322 0.251179989 7.00E-13 12.15487928 1.496128882 S(ph)LPNLSR ddPTM_HeLa_A486_30min_R1 5 SLPNLSR 7 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 S(0.996)LPNLS(0.004)R;S(1)LPNLSR;S(1)LPNLSR;S(1)LPNLSR;S(0.987)LPNLS(0.013)R ;;;; 114.86 0.0025602 1475730000 885110 1069910 913000 315313 1237510 860340 992350 1025260 841180 796260 TRUE FALSE FALSE 823068.3597 985126.4351 1266538.051 734064.599 1082289.956 754199.9981 744053.534 791830.6793 914094.1597 596871.3132 1.378971215 1.650483803 2.121961674 1.229854045 1.81327186 1.263588954 1.246589537 1.32663551 1.531476115 1 19.18706039 -6.276356594 24.72802813 1.292380933 1.643662628 0.339361173 0.254093534 870.4883779 1442990.207 0.087712364 0.077681439 5.29E-07 6.276356594 0.351281695 S(ph)LPPGLLR ddPTM_HeLa_A485_30min_R1 8 SLPPGLLR 8 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR ;;;;;;; 108.15 0.0013114 1481973000 418781 525058 502737 495752 656083 540189 641697 717835 497051 656438 TRUE FALSE FALSE 511937.3887 586458.9657 688720.3369 522833.6764 590761.0729 568472.4607 504593.1938 541784.8407 596804.5765 492800.0874 1.038833802 1.190054508 1.397565371 1.060944772 1.198784432 1.153555925 1.023930812 1.099400862 1.211048033 1 18.91064299 -6.537297685 22.51216959 1.091430375 1.182972697 0.150505861 0.104548855 150.4601115 234905.3456 0.040258596 0.031207377 2.90E-07 6.537297685 0.091542322 S(ph)LPPGLLR ddPTM_HeLa_A486_30min_R1 7 SLPPGLLR 8 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR;S(1)LPPGLLR ;;;;;; 108.43 0.0012985 2269780000 595332 630032 492860 233080 717218 607936 666450 696403 530862 737003 TRUE FALSE FALSE 553602.3011 580105.9698 683708.5912 542622.0192 627257.8306 532935.0374 499697.161 537847.2393 576877.5456 552452.6517 1.002080992 1.050055544 1.237587672 0.982205475 1.135405593 0.964670974 0.904506765 0.973562599 1.044211742 1 19.0754913 -6.276910618 24.58643382 0.971182839 1.082880806 0.327893429 0.074224064 762.1666943 1211209.344 0.026126771 0.023124741 5.29E-07 6.276910618 0.111697967 S(ph)LPRPAK ddPTM_HeLa_A485_30min_R1 4 SLPRPAK 7 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(1)LPRPAK;S(1)LPRPAK;S(1)LPRPAK;S(1)LPRPAK ;;; 76.827 0.0074695 3288610000 1240940 1324670 1043160 1176430 1451320 1505950 1944210 1924670 1132910 1660590 TRUE FALSE FALSE 1516982.822 1479578.633 1429068.294 1240695.392 1306821.485 1584799.213 1528813.651 1452641.665 1360274.645 1246635.474 1.216861588 1.186857477 1.146340148 0.995235109 1.048278757 1.271261124 1.226351795 1.165249742 1.091156696 1 20.24960824 -8.038812432 3.348671337 1.000313477 1.154471584 0.282706988 0.077875279 0.373460546 10.86317835 0.083843246 0.022249595 9.15E-09 8.038812432 0.154158106 S(ph)LPRPAK ddPTM_HeLa_A486_30min_R1 4 SLPRPAK 7 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(1)LPRPAK;S(1)LPRPAK;S(1)LPRPAK;S(1)LPRPAK ;;; 98.033 0.0024252 2562410000 1266600 1153550 750500 390887 1221270 1123160 1348480 1302560 996060 1464440 TRUE FALSE FALSE 1177817.881 1062138.497 1041113.699 910004.6903 1068086.929 984595.9387 1011076.041 1005995.523 1082399.283 1097734.692 1.072953136 0.967573043 0.948420148 0.828984177 0.972991868 0.896934337 0.921056835 0.916428651 0.986029949 1 20.06609799 -4.278050065 2.046073362 0.926816834 1.111010202 0.439467302 0.046856205 0.59074708 2.784960189 0.012027771 0.200242814 5.27E-05 4.278050065 0.184193368 S(ph)LPRPHDFFDAQTLDAIR ddPTM_HeLa_A485_30min_R1 4 SLPRPHDFFDAQTLDAIR 18 1 Q6ZN18-2;Q6ZN18;A0A669KBC9;A0A669KBL4;G5EA50;Q6ZN18-3 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(1)LPRPHDFFDAQTLDAIR;S(1)LPRPHDFFDAQTLDAIR;S(1)LPRPHDFFDAQTLDAIR;S(1)LPRPHDFFDAQTLDAIR ;;; 142.99 3.40E-08 542287000 192273 214054 196494 230591 277679 247937 292773 295360 210346 304201 TRUE FALSE FALSE 235043.4655 239085.7533 269185.3074 243187.6024 250032.3038 260918.5979 230219.6568 222922.4969 252560.5128 228369.2891 1.029225368 1.04692603 1.17872814 1.064887505 1.094859579 1.142529273 1.008102524 0.976149191 1.105930284 1 17.80100913 -6.780604575 24.98765998 1.020557908 1.093494048 0.30793117 0.051601256 307.4732049 400881.347 0.021663637 0.014630525 1.66E-07 6.780604575 0.072936141 S(ph)LPRPHDFFDAQTLDAIR ddPTM_HeLa_A486_30min_R1 2 SLPRPHDFFDAQTLDAIR 18 1 Q6ZN18-2;Q6ZN18;A0A669KBC9;A0A669KBL4;G5EA50;Q6ZN18-3 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(1)LPRPHDFFDAQTLDAIR;S(1)LPRPHDFFDAQTLDAIR ; 127.22 5.62E-06 297580000 127228 141303 125955 51520 163320 133938 149113 139790 132029 138875 TRUE FALSE FALSE 118309.9742 130105.6357 174728.1492 119941.1637 142834.8827 117414.0913 111803.3502 107962.8686 143473.38 104099.7961 1.136505341 1.249816432 1.678467737 1.152174819 1.372095701 1.127899341 1.074001626 1.037109319 1.378229213 1 16.66760772 -6.271496333 22.913745 1.122676792 1.324868831 0.246274299 0.169786464 330.5974318 753228.2685 0.059298486 0.053010564 5.35E-07 6.271496333 0.202192039 S(ph)LPRPSK ddPTM_HeLa_A485_30min_R1 2 SLPRPSK 7 1 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5;H0YHA8;Q8IVL0;Q8IVL0-2;A0A2R8YFX5;Q8IVL0-3 Q8IVL1-8 NAV2;NAV3 Neuron navigator 2;Neuron navigator 3 1 0 S(1)LPRPSK;S(1)LPRPSK ; 66.299 0.012323 313250000 208734 301500 331804 244580 359780 268470 299890 294690 283630 314060 TRUE FALSE FALSE 255166.1582 336757.8023 454552.1071 257940.7861 323959.0399 282526.6741 235816.0516 222416.8154 340551.9394 235770.6218 1.082264432 1.428328091 1.927942097 1.094032768 1.374043286 1.198311613 1.000192686 0.943361025 1.444420584 1 17.84702444 -6.039786626 1.434083699 1.098292921 1.441104891 0.218588005 0.252923692 0.604193156 2.540518568 0.10770742 0.116731308 9.12E-07 6.039786626 0.34281197 S(ph)LPRPSK ddPTM_HeLa_A486_30min_R1 2 SLPRPSK 7 1 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5;H0YHA8;Q8IVL0;Q8IVL0-2;A0A2R8YFX5;Q8IVL0-3 Q8IVL1-8 NAV2;NAV3 Neuron navigator 2;Neuron navigator 3 1 0 S(1)LPRPSK;S(1)LPRPSK ; 67.334 0.011382 1119860000 468230 466790 311570 165229 475010 453300 528450 496230 386140 528750 TRUE FALSE FALSE 435409.4949 429799.8604 432218.2481 384661.4622 415429.8165 397376.4548 396226.2206 383249.2616 419610.9261 396347.5584 1.098554755 1.084401433 1.090503118 0.970515534 1.048145265 1.002595945 0.99969386 0.966952498 1.058694364 1 18.59640656 -5.245112563 24.4035614 1.006549166 1.090477953 0.6658534 0.027428728 344.2203227 514501.6697 0.007124126 0.012285918 5.69E-06 5.245112563 0.083928787 S(ph)LPS(ph)SPERR ddPTM_HeLa_A486_30min_R1 1 SLPSSPERR 9 1 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 2 0 S(0.983)LPS(0.845)S(0.172)PERR 64.266 0.010854 899940000 1385600 1614400 1207300 435830 1694700 1361900 1390800 1524900 1368700 1301300 TRUE FALSE FALSE 1288476.595 1486469.064 1674798.893 1014634.266 1482134.924 1193882.625 1042807.13 1177713.558 1487340.018 975446.01 1.320910211 1.52388656 1.716957039 1.040174705 1.51944332 1.223935115 1.069056738 1.20735904 1.524779437 1 19.8957025 -5.260897965 24.9999103 1.240584973 1.520914792 0.330199033 0.191264289 59.63585599 2753637.222 0.05228502 0.084003191 5.48E-06 5.260897965 0.280329819 S(ph)LPS(ph)SPLLTHQSISVR ddPTM_HeLa_A485_30min_R1 5 SLPSSPLLTHQSISVR 16 0 J3QQY7;J3KTM5 J3QQY7 TANC2 2 0 S(0.999)LPS(0.547)S(0.454)PLLTHQSISVR;S(1)LPS(0.72)S(0.28)PLLTHQSISVR;S(1)LPS(0.574)S(0.426)PLLTHQSISVR;S(1)LPS(0.558)S(0.442)PLLTHQSISVR;S(0.972)LPS(0.704)S(0.317)PLLT(0.006)HQSISVR ;;;; 167.89 4.50E-12 1491070000 441373 1053150 1132200 237284 1402030 727350 818020 928950 844840 464659 TRUE FALSE FALSE 539554.9011 1176306.731 1551047.895 250246.2241 1262438.97 765432.9213 643243.3444 701123.556 1014391.639 348828.0627 1.546764606 3.372167715 4.446453885 0.717391319 3.619086608 2.194298576 1.844012604 2.009940228 2.907998946 1 18.41215658 -9.867541663 0.210855811 4.12E-15 2.969357207 0.159120524 1.041037287 30.01759955 1.520790269 21.85375757 2.775601538 1.36E-10 9.867541663 2.969357207 S(ph)LPS(ph)SPLLTHQSISVR ddPTM_HeLa_A486_30min_R1 4 SLPSSPLLTHQSISVR 16 0 J3QQY7;J3KTM5 J3QQY7 TANC2 2 0 S(1)LPS(0.579)S(0.421)PLLTHQSISVR;S(1)LPS(0.935)S(0.065)PLLTHQSISVR;S(1)LPS(0.5)S(0.5)PLLTHQSISVR;S(0.994)LPS(0.539)S(0.466)PLLTHQSISVR ;;; 209.85 1.38E-25 900368000 488546 606410 662985 49002.8 776617 330891 366947 426901 581787 150162 TRUE FALSE FALSE 454301.4483 558355.8631 919710.5474 114080.9949 679206.4542 290069.0327 275132.9794 329704.9615 632216.7656 112560.4578 4.036066103 4.960497443 8.170813848 1.013508625 6.034147936 2.577006511 2.444312903 2.929136643 5.61668616 1 16.78034058 -5.265728275 24.9995837 3.242875094 5.646262907 0.297128025 1.845064584 483.1664806 2816336.588 0.500143589 0.771968997 5.42E-06 5.265728275 2.403387813 S(ph)LPSASTSK ddPTM_HeLa_A485_30min_R1 1 SLPSASTSK 9 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 0 S(0.876)LPS(0.122)AS(0.002)TSK 93.442 0.0030037 367570000 591120 591130 469980 723270 728080 688620 882540 921360 583690 987390 TRUE FALSE FALSE 722612.6047 660257.5114 643845.1595 762780.4087 655589.7988 724675.0784 693978.1193 695395.0154 700831.2291 741251.8446 0.974854376 0.890733043 0.868591646 1.029043522 0.884435976 0.977636796 0.936224475 0.938135966 0.945469794 1 19.49960426 -13.99999986 0.158260495 1.233792476 0.919553862 0.144587992 0.045889454 254.277392 2.323579224 18.63012366 0.195589662 1.00E-14 13.99999986 -0.314238613 S(ph)LPSASTSK ddPTM_HeLa_A486_30min_R1 1 SLPSASTSK 9 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 0 S(0.787)LPS(0.173)AS(0.036)T(0.004)SK 60.019 0.031716 330220000 874130 891290 574480 423390 878380 908620 1180600 1025500 721540 1304700 TRUE FALSE FALSE 812858.001 820660.9344 796934.0411 985673.3169 768205.3898 796523.7026 885201.3929 792016.0365 784083.6682 977994.6278 0.831147716 0.839126219 0.814865459 1.007851463 0.785490398 0.814445887 0.90511887 0.809836797 0.801725946 1 19.89946701 -10.10430604 6.158583074 1.000000465 0.847222393 0.355597841 0.062351714 3.95E-07 5.74E-08 0.059883627 0.014523869 7.86E-11 10.10430604 -0.152778072 S(ph)LPSHMEEAPNVFQLYQRPTSASR ddPTM_HeLa_A485_30min_R1 2 SLPSHMEEAPNVFQLYQRPTSASR 24 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 S(0.825)LPS(0.175)HMEEAPNVFQLYQRPTSASR;S(0.996)LPS(0.004)HMEEAPNVFQLYQRPTSASR ; 162.27 3.08E-14 378490000 0 13687.1 16425.9 3694.1 20464.4 13855.1 15818.2 22287 13075.2 5691.8 TRUE FALSE FALSE 0 15287.68728 22502.52395 3895.899329 18426.89248 14580.53161 12438.51235 16821.07831 15699.27271 4272.93901 0 3.577792065 5.266287185 0.911761043 4.312463257 3.412295747 2.910996932 3.936653031 3.674115795 1 12.06101301 -4.258920963 24.99999892 3.336173552 0.000233879 0.355487542 1.293587777 239.5024002 2377370.371 0.301056397 1.985028193 5.51E-05 4.258920963 -3.335939673 S(ph)LPSHMEEAPNVFQLYQRPTSASR ddPTM_HeLa_A486_30min_R1 4 SLPSHMEEAPNVFQLYQRPTSASR 24 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 S(1)LPSHMEEAPNVFQLYQRPTSASR;S(0.998)LPS(0.002)HMEEAPNVFQLYQRPTSASR;S(0.95)LPS(0.047)HMEEAPNVFQLYQRPT(0.001)S(0.001)AS(0.001)R;S(0.632)LPS(0.367)HMEEAPNVFQLYQRPTSASR ;;; 254.55 2.15E-61 1615940000 65324.6 54625 59532.2 31010.2 58398.7 38758.3 76129.7 48784.3 56289.8 52505.3 TRUE FALSE FALSE 60745.68288 50296.31606 82584.66217 72193.31277 51073.7905 33976.69501 57081.24384 37677.17984 61169.04519 39357.63113 1.54342833 1.27793047 2.098313842 1.834290091 1.297684567 0.863280996 1.450322141 0.957303038 1.554185133 1 15.26435577 -5.888907216 5.444695278 1.170431994 1.685617895 0.442451201 0.278489568 0.203566398 8.968353967 0.087787018 0.100200024 1.29E-06 5.888907216 0.515185901 S(ph)LPSS(ph)PLLTHQSISVR ddPTM_HeLa_A486_30min_R1 2 SLPSSPLLTHQSISVR 16 0 J3QQY7;J3KTM5 J3QQY7 TANC2 2 0 S(0.998)LPS(0.191)S(0.811)PLLTHQSISVR;S(0.998)LPS(0.225)S(0.749)PLLT(0.027)HQSISVR ; 144.73 1.67E-07 261450000 210862 255020 258760 29117.7 308890 154599 181094 213877 253580 108233 TRUE FALSE FALSE 196081.6627 234811.2864 358958.8018 67787.47713 270146.1359 135526.1472 135782.3658 165181.876 275560.5186 81130.75232 2.416859909 2.894232824 4.424448086 0.835533693 3.329762491 1.670465802 1.673623896 2.035995862 3.396498993 1 16.30796125 -5.261012451 24.99977826 2.063978793 3.210085442 0.276447856 0.923612854 54.50511303 3191583.057 0.247747264 0.397426876 5.48E-06 5.261012451 1.146106648 S(ph)LPSSPLLTHQSISVR ddPTM_HeLa_A485_30min_R1 2 SLPSSPLLTHQSISVR 16 0 J3QQY7;J3KTM5 J3QQY7 TANC2 1 0 S(0.998)LPS(0.001)S(0.001)PLLTHQSISVR;S(0.999)LPSSPLLTHQSISVR ; 160.27 5.98E-12 228680000 48727 95296 99584 30611 112731 68171 78957 86004 73934 45141 TRUE FALSE FALSE 59566.15304 106440.0382 136424.2656 32283.20142 101507.1058 71740.32815 62087.19193 64911.38415 88771.87564 33888.17946 1.757726558 3.140919339 4.025718342 0.952639001 2.995354352 2.116972033 1.832119427 1.915457991 2.619552807 1 15.04849451 -9.518172395 0.16719545 3.63E-16 3.034676368 0.214386976 0.813761849 27.81195743 1.244246832 18.94792342 4.428188383 3.03E-10 9.518172395 3.034676368 S(ph)LPSTSSTSSTKR ddPTM_HeLa_A485_30min_R1 1 SLPSTSSTSSTKR 13 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.89)LPS(0.034)T(0.06)S(0.015)STSSTKR 85.473 0.0012944 272520000 136320 179910 142010 140620 209260 210210 236480 298150 160730 203650 TRUE FALSE FALSE 166643.9137 200948.9095 194545.4085 148301.7145 188425.3396 221216.2706 185954.1161 225028.245 192987.0367 152883.8029 1.090003719 1.314389789 1.272505032 0.970028948 1.23247418 1.446956881 1.216310117 1.471890683 1.262311854 1 17.22207604 -6.003694347 24.88583138 1.308891145 1.170636286 0.102451728 0.151516613 276.264654 1860993.307 0.045806245 0.050872234 9.92E-07 6.003694347 -0.138254859 S(ph)LPSTSSTSSTKR ddPTM_HeLa_A486_30min_R1 1 SLPSTSSTSSTKR 13 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.963)LPS(0.031)T(0.005)SSTSSTKR 107.13 0.00022797 283030000 199400 184660 126390 75440 211200 185810 211390 224670 150660 247300 TRUE FALSE FALSE 185423.0897 170026.8691 175331.5928 175628.1325 184709.3266 162886.6514 158497.9861 173517.5455 163719.3301 185374.4703 1.000262276 0.917207579 0.945823837 0.947423516 0.996411892 0.878689774 0.85501518 0.936037984 0.883181647 1 17.50008305 -6.271088196 24.96989904 0.903114183 0.957324569 0.243095793 0.043576769 916.7536604 2372433.981 0.014686568 0.013111556 5.36E-07 6.271088196 0.054210386 S(ph)LPTTVPES(ph)PNYR ddPTM_HeLa_A485_30min_R1 8 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(0.999)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR ;;;;;;; 276.63 2.86E-48 35448880000 6835740 7828760 7003670 6548250 8872490 7432470 8918780 10025450 6299920 7725420 TRUE FALSE FALSE 8356326.78 8744265.381 9594618.98 6905964.316 7989113.742 7821622.636 7013209.793 7566692.668 7564256.158 5799614.97 1.440841646 1.507732052 1.654354475 1.190762551 1.37752485 1.348645156 1.209254378 1.304688795 1.304268679 1 22.46752569 -2.920963229 0.040376523 7.71E-09 3.192865107 0.61531893 0.106655721 352.9519544 1.569190914 40.38809138 92.89612802 0.001199601 2.920963229 3.192865099 S(ph)LPTTVPES(ph)PNYR ddPTM_HeLa_A486_30min_R1 6 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(0.999)LPT(0.001)TVPES(1)PNYR;S(1)LPTTVPES(1)PNYR ;;;;; 350.96 2.48E-94 30356110000 5376600 5198880 4134240 1616102 5512610 4323500 5173720 5129620 4025360 4577640 TRUE FALSE FALSE 4999728.105 4786901.815 5735128.447 3762367.129 4821167.051 3790110.528 3879200.534 3961717.505 4374281.446 3431369.149 1.457065063 1.39504134 1.671381947 1.096462364 1.405027219 1.104547591 1.13051099 1.154558817 1.274791856 1 21.71035291 -5.271870237 24.95117689 1.178847541 1.496550644 0.618438314 0.122479568 450.1963026 1076893.083 0.033472651 0.050265754 5.35E-06 5.271870237 0.317703103 S(ph)LPTTVPESPNYR ddPTM_HeLa_A485_30min_R1 4 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 S(0.991)LPT(0.007)T(0.002)VPESPNYR;S(0.998)LPT(0.001)TVPESPNYR;S(1)LPTTVPESPNYR;S(0.993)LPT(0.006)TVPESPNYR ;;; 170 4.61E-12 17026500000 612766 626860 669240 927300 927420 713520 969430 960650 704820 1167010 TRUE FALSE FALSE 749073.6827 700165.824 916819.7254 977956.051 835082.8084 750878.8039 762303.361 725049.0813 846270.909 876095.8842 0.855013357 0.799188578 1.046483315 1.116266003 0.953186544 0.857073772 0.870114076 0.827591014 0.965956951 1 19.74072925 -6.178906421 7.844178083 0.891342471 0.959897927 0.054026508 0.095846605 0.820111613 70.19469323 0.034672488 0.034682276 6.62E-07 6.178906421 0.068555456 S(ph)LPTTVPESPNYR ddPTM_HeLa_A486_30min_R1 2 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 S(0.998)LPT(0.001)TVPESPNYR;S(0.997)LPT(0.001)T(0.002)VPESPNYR ; 196.75 5.35E-19 10028700000 276330 273740 161491 235111 265590 349010 501010 472000 211525 627030 TRUE FALSE FALSE 256960.694 252047.8455 224024.6401 547350.2899 232277.2257 305952.6947 375651.9989 364535.9037 229860.1573 470017.6067 0.546704401 0.536251923 0.476630315 1.16453146 0.49418835 0.650938795 0.799229632 0.775579252 0.489045844 1 18.84235528 -14 0.155914606 2.108472851 0.580487823 0.1922499 0.203040698 239.3026579 2.171200456 83.64261338 0.935995226 1.00E-14 14 -1.527985029 S(ph)LPVSICR ddPTM_HeLa_A486_30min_R1 1 SLPVSICR 8 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 S(1)LPVSICR 71.614 0.015575 317990000 68080 67932 58184 26653 82781 62989 68519 71443 57135 77119 TRUE FALSE FALSE 63307.94357 62548.82092 80714.40302 62049.53097 72397.83508 55218.05761 51374.82148 55176.98849 62087.5078 57807.90044 1.095143451 1.082011636 1.396252111 1.073374582 1.252386517 0.955199154 0.888716267 0.954488713 1.074031531 1 15.81897905 -6.271676549 24.75831654 0.966281984 1.180507956 0.514381072 0.099600944 501.9185304 1213872.963 0.034884259 0.031113055 5.35E-07 6.271676549 0.214225973 S(ph)LPVSVPVWGFK ddPTM_HeLa_A485_30min_R1 3 SLPVSVPVWGFK 12 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK ;; 305.06 2.10E-50 45798869000 11428106 11694638 9913446 10514479 13891593 12747892 17901989 18458305 9920719 12916050 TRUE FALSE FALSE 13970248.75 13062224.18 13580842.21 11088858.36 12508497.22 13415351.91 14077082.8 13931376.76 11911716.31 9696316.437 1.440778964 1.347132622 1.400618709 1.143615561 1.290025682 1.383551372 1.451796968 1.43677002 1.228478503 1 23.20900535 -8.048866227 5.090201798 1.000095243 1.355986916 0.621716742 0.086775579 0.183235523 14.94589758 0.090857793 0.023667707 8.94E-09 8.048866227 0.355891673 S(ph)LPVSVPVWGFK ddPTM_HeLa_A486_30min_R1 5 SLPVSVPVWGFK 12 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK ;;;; 255.9 2.93E-33 37681261000 10710219 12081380 8516336 4715416.1 12484531 11850749 13983408 13686931 9044920 11339887 TRUE FALSE FALSE 9959487.956 11124007.45 11814089.37 10977726.98 10918604.71 10388724.08 10484611.42 10570715.59 9828940.948 8500305.485 1.171662357 1.308659726 1.389842917 1.291450878 1.284495566 1.222158909 1.233439367 1.243568906 1.156304437 1 23.01908326 -8.30192115 0.53429557 0.989601039 1.295688846 0.717257968 0.053299519 0.760343795 0.454746768 0.072037998 0.027980288 4.99E-09 8.30192115 0.306087807 S(ph)LQEEHVAVAQLR ddPTM_HeLa_A485_30min_R1 4 SLQEEHVAVAQLR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR ;;; 149.73 4.70E-08 1004630000 336959 406257 419831 374695 599556 442850 523748 643140 465434 580156 TRUE FALSE FALSE 411914.3671 453765.2222 575143.9575 395163.6391 539862.0995 466036.9412 411844.9612 485408.9066 558842.3346 435533.7862 0.945769031 1.041859981 1.320549578 0.907308805 1.239541263 1.070036254 0.945609673 1.114514929 1.283120512 1 18.73242511 -4.521746567 24.99790092 1.109382111 0.9697917 0.128873807 0.131715278 70.76318412 1562355.509 0.03245343 0.088397271 3.01E-05 4.521746567 -0.139590411 S(ph)LQEEHVAVAQLR ddPTM_HeLa_A486_30min_R1 4 SLQEEHVAVAQLR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR ;;; 161.86 6.62E-12 911760000 583364 590607 510657 243604 765451 664142 721488 810721 533340 649536 TRUE FALSE FALSE 542473.1961 543805.1504 708397.0663 567122.4231 669440.998 582206.9125 540964.0713 626137.5262 579570.3406 486887.9578 1.114164332 1.11689998 1.454948833 1.164790408 1.374938499 1.195771847 1.1110648 1.285999204 1.190356696 1 18.89323029 -6.511210081 24.66730733 1.168221273 1.249228785 0.117640862 0.121216214 1262.843143 2669636.781 0.044075542 0.036723364 3.08E-07 6.511210081 0.081007512 S(ph)LQHQEQLEDSKELQPVVSHQETSVGALGSLCR ddPTM_HeLa_A485_30min_R1 2 SLQHQEQLEDSKELQPVVSHQETSVGALGSLCR 33 1 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L427 I3L419 FAM64A Protein FAM64A 1 0 S(0.999)LQHQEQLEDS(0.001)KELQPVVSHQETSVGALGSLCR;S(0.566)LQHQEQLEDS(0.434)KELQPVVSHQETSVGALGSLCR ; 260.28 4.73E-64 506100000 136364 111555 103229 186684 209610 136372 189622 200239 147072 234640 TRUE FALSE FALSE 166697.7013 124600.3869 141417.7028 196882.0742 188740.4924 143512.227 149107.7106 151130.0713 176588.0014 176148.5662 0.946347194 0.707359643 0.802831984 1.117704665 1.071484693 0.814722652 0.846488358 0.857969352 1.002494685 1 17.42643321 S(ph)LQHQEQLEDSKELQPVVSHQETSVGALGSLCR ddPTM_HeLa_A486_30min_R1 2 SLQHQEQLEDSKELQPVVSHQETSVGALGSLCR 33 1 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L427 I3L419 FAM64A Protein FAM64A 1 0 S(0.93)LQHQEQLEDS(0.07)KELQPVVSHQETSVGALGSLCR;S(0.956)LQHQEQLEDS(0.044)KELQPVVSHQETSVGALGSLCR ; 105.31 6.94E-05 498220000 164247 149913 101473 46803 184249 183769 251110 237340 125059 238560 TRUE FALSE FALSE 152734.1335 138033.3479 140766.0631 108959.7493 161138.7724 161097.4492 188279.622 183302.8631 135899.2148 178823.0232 0.854107769 0.771899196 0.787180871 0.609316112 0.901107528 0.900876444 1.052882446 1.025051807 0.759964866 1 17.44817297 -5.97833161 21.53053299 0.94979145 0.758562988 0.481748002 0.094678327 42.61795678 42345.3436 0.029689597 0.033657606 1.05E-06 5.97833161 -0.191228462 S(ph)LQLMDNR ddPTM_HeLa_A485_30min_R1 7 SLQLMDNR 8 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR ;;;;;; 136.81 0.00046801 4380350000 2331400 2841610 2583960 2236520 3186980 2643860 3393380 3637000 2420530 3039950 TRUE FALSE FALSE 2850011.887 3173911.571 3539874.332 2358695.424 2869673.081 2782288.421 2668356.642 2745020.047 2906308.169 2282146.411 1.248829555 1.390757208 1.551116227 1.033542551 1.257444775 1.219154217 1.169231136 1.202823813 1.273497684 1 21.12195992 -2.791503764 0.029597949 1.22E-07 2.826376328 0.336401006 0.122946994 1187.859788 3.765289563 130.2943296 244.6252093 0.001616204 2.791503764 2.826376207 S(ph)LQLMDNR ddPTM_HeLa_A486_30min_R1 6 SLQLMDNR 8 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR;S(1)LQLMDNR ;;;;; 133.85 0.00050518 3549010000 2516860 2529270 2209140 903103 2913360 2311190 2715450 2806450 2061840 2517660 TRUE FALSE FALSE 2340441.111 2328841.434 3064578.171 2102469.424 2547939.223 2026058.876 2036015.689 2167482.599 2240561.951 1887221.549 1.240151752 1.234005321 1.623857132 1.114055435 1.350100747 1.073567053 1.078842964 1.148504584 1.187227834 1 20.84783237 -6.26203477 24.99950958 1.105735923 1.314357174 0.402731345 0.130598518 59.54049951 2499964.378 0.044289918 0.041420584 5.47E-07 6.26203477 0.208621251 S(ph)LQLPASPAPDPSPR ddPTM_HeLa_A486_30min_R1 1 SLQLPASPAPDPSPR 15 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(0.998)LQLPAS(0.002)PAPDPSPR 86.497 0.0014198 92202000 92176 97445 71106 39184 80239 107450 125090 110280 95398 96730 TRUE FALSE FALSE 85714.9384 89723.10331 98640.14748 91222.33225 70174.67642 94193.91147 93791.15893 85171.6514 103667.1755 72508.17839 1.18214166 1.237420458 1.360400298 1.258097145 0.967817396 1.299079822 1.293525241 1.174648892 1.429730794 1 16.14585611 -5.555602257 24.99952572 1.203980767 1.266317815 0.049636592 0.135291893 705.9888661 539345.378 0.039773897 0.051348172 2.78E-06 5.555602257 0.062337048 S(ph)LQLPASPAPDPSPRPAYK ddPTM_HeLa_A485_30min_R1 2 SLQLPASPAPDPSPRPAYK 19 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)LQLPASPAPDPSPRPAYK;S(1)LQLPASPAPDPSPRPAYK ; 166.59 8.82E-13 1509230000 992780 1034810 817860 934980 1242160 1127630 1442910 1510330 960740 1439330 TRUE FALSE FALSE 1213620.486 1155822.028 1120420.448 986055.5899 1118486.189 1186670.963 1134620.491 1139919.199 1153551.706 1080531.52 1.123169906 1.069679141 1.036916025 0.912565318 1.035125925 1.098228919 1.050057745 1.054961543 1.067578025 1 20.04330973 -6.026863647 24.70087978 1.058380715 1.030079853 0.022129757 0.054085119 2233.111323 2053321.911 0.019055709 0.019113494 9.40E-07 6.026863647 -0.028300862 S(ph)LQLPASPAPDPSPRPAYK ddPTM_HeLa_A486_30min_R1 2 SLQLPASPAPDPSPRPAYK 19 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)LQLPASPAPDPSPRPAYK;S(1)LQLPASPAPDPSPRPAYK ; 159.98 1.37E-12 1616330000 909740 882580 556000 332460 949290 786170 966870 1036300 646710 926680 TRUE FALSE FALSE 845971.9239 812641.1465 771298.0902 773983.6816 830221.1964 689180.3386 724948.8995 800357.1123 702767.3435 694633.2963 1.217868375 1.169885105 1.110367289 1.114233489 1.195193494 0.992149876 1.0436426 1.152200904 1.011709843 1 19.40589204 -1.00000001 0.173218671 0.998538349 1.870851242 0.529491412 0.054647813 50.63214693 0.554679818 0.138827876 11.50762356 0.099999998 1.00000001 0.872312894 S(ph)LQQLAEER ddPTM_HeLa_A485_30min_R1 3 SLQQLAEER 9 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 S(1)LQQLAEER;S(1)LQQLAEER;S(1)LQQLAEER ;; 129.37 0.00025304 695770000 220466 243356 210253 284643 326707 194527 327052 284481 203692 325965 TRUE FALSE FALSE 269507.9011 271814.3673 288034.3341 300192.3263 294178.9039 204712.1329 257174.6684 214711.5887 244571.116 244707.9244 1.101345213 1.110770597 1.177053562 1.22673725 1.202163373 0.836557024 1.050945404 0.877419843 0.999440932 1 17.9007013 -6.248216581 24.99049704 0.951340927 1.164931753 0.708957407 0.067506878 422.4311823 798376.359 0.021964398 0.021839253 5.65E-07 6.248216581 0.213590827 S(ph)LQQLAEER ddPTM_HeLa_A486_30min_R1 3 SLQQLAEER 9 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 S(1)LQQLAEER;S(1)LQQLAEER;S(1)LQQLAEER ;; 145.83 9.69E-05 717920000 236046 254715 233676 104556 308478 267629 307331 299580 241856 312371 TRUE FALSE FALSE 219500.3943 234530.4557 324161.6053 243411.652 269785.8128 234611.655 230433.5332 231372.1738 262820.2728 234151.2684 0.937429875 1.001619412 1.384411058 1.039548723 1.152185998 1.001966193 0.984122507 0.9881312 1.122437963 1 17.83708133 -6.272727047 24.10376494 1.016389199 1.109509133 0.111843097 0.117090108 1035.29679 2210771.287 0.042337601 0.037691045 5.34E-07 6.272727047 0.093119934 S(ph)LQTLPTDSSTFDTDTFCPPRPKPVAR ddPTM_HeLa_A485_30min_R1 1 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 S(0.944)LQT(0.034)LPT(0.003)DS(0.004)S(0.005)T(0.005)FDT(0.005)DTFCPPRPKPVAR 54.867 0.014121 706320000 163730 184930 156740 199730 253710 194130 273950 283330 208960 279060 TRUE FALSE FALSE 200151.1736 206555.9548 214724.6485 210640.7442 228449.7416 204294.3466 215418.3445 213842.8733 250896.3553 209495.4777 0.955396154 0.985968562 1.024960781 1.005466784 1.090475766 0.975173063 1.028272051 1.020751739 1.19762182 1 17.67655958 -1.122342719 0.3351815 1.060141537 8.38E-13 0.231413106 0.058057428 82.1936285 1.264321278 0.050911107 53.55533424 0.075449659 1.122342719 -1.060141537 S(ph)LQTLPTDSSTFDTDTFCPPRPKPVAR ddPTM_HeLa_A486_30min_R1 3 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 S(0.943)LQT(0.039)LPT(0.007)DS(0.006)S(0.005)T(0.001)FDTDTFCPPRPKPVAR;S(1)LQTLPTDSSTFDTDTFCPPRPKPVAR;S(0.903)LQT(0.078)LPT(0.015)DS(0.002)S(0.002)TFDTDTFCPPRPKPVAR ;; 176.98 4.73E-15 1633020000 501270 562930 364966 179937 584910 530390 608460 616720 433620 615770 TRUE FALSE FALSE 466133.5616 518321.3766 506290.6093 418902.4295 511545.1337 464955.8744 456216.8724 476306.3189 471206.5307 461577.184 1.009871323 1.122935437 1.096870961 0.907545789 1.108254809 1.007319882 0.988386966 1.031910448 1.020861834 1 18.81621239 S(ph)LRLS(ph)AQK ddPTM_HeLa_A485_30min_R1 3 SLRLSAQK 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 2 0 S(1)LRLS(1)AQK;S(1)LRLS(1)AQK;S(1)LRLS(1)AQK ;; 119.25 0.0008901 1790460000 2618740 2202510 1698230 3260640 3030740 2574290 3430650 3358890 2088350 4087500 TRUE FALSE FALSE 3201269.678 2460074.385 2326475.946 3438760.507 2728988.884 2709075.844 2697663.602 2535116.961 2507462.69 3068561.475 1.043247693 0.801702819 0.758165012 1.120642534 0.889338182 0.882848809 0.879129724 0.826158114 0.817145985 1 21.54913106 -5.989510533 24.99247673 0.871851225 0.921320126 0.040204612 0.108259042 845.9529018 2015576.632 0.03425452 0.038801465 1.02E-06 5.989510533 0.049468901 S(ph)LRLS(ph)AQK ddPTM_HeLa_A486_30min_R1 3 SLRLSAQK 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 2 0 S(1)LRLS(1)AQK;S(1)LRLS(1)AQK;S(1)LRLS(1)AQK ;; 127.02 0.00065076 1749450000 3701900 3541900 1890430 1609130 3365900 3923800 4679800 4220000 2729250 4734500 TRUE FALSE FALSE 3442415.927 3261226.945 2622455.123 3746135.961 2943717.436 3439721.45 3508864.542 3259198.122 2965823.587 3548950.384 0.969981418 0.918927173 0.738938232 1.055561661 0.829461423 0.969222186 0.988704874 0.918355505 0.83569035 1 21.75896097 -5.276353435 24.99327729 0.93736382 0.880246739 0.109715283 0.085675674 2047.116752 3430595.208 0.023777606 0.035426613 5.29E-06 5.276353435 -0.05711708 S(ph)LS(ph)ES(ph)WEVINSK ddPTM_HeLa_A486_30min_R1 1 SLSESWEVINSK 12 0 Q9H6L5 Q9H6L5 FAM134B Protein FAM134B 3 0 S(1)LS(1)ES(1)WEVINS(0.001)K 65.234 0.015215 837760000 702660 868000 841590 11279 1182000 648570 466120 669490 799110 123200 TRUE FALSE FALSE 653407.1625 799216.5188 1167476.187 26258.08201 1033742.538 568556.0276 349491.8459 517061.7419 868377.4982 92349.9181 7.075341007 8.654220114 12.64187571 0.284332488 11.19375696 6.15654068 3.784430491 5.59894099 9.403121476 1 16.49482306 -8.969013854 0.231544232 9.87E-17 8.750835245 0.214581144 3.4355858 13.01821479 1.222211624 31.28347017 8.140152675 1.07E-09 8.969013854 8.750835245 S(ph)LS(ph)GS(ph)SPCPK ddPTM_HeLa_A486_30min_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)LS(0.968)GS(0.916)S(0.116)PCPK 166.04 3.41E-07 1317600000 1617900 1710500 856990 1340200 1678500 2261700 2815300 2533100 1382500 3080600 TRUE FALSE FALSE 1504493.565 1574953.75 1188839.479 3120053.33 1467966.879 1982674.449 2110882.163 1956368.427 1502336.213 2309197.709 0.651522197 0.68203504 0.514827931 1.351141705 0.635704285 0.858598829 0.914119287 0.847206984 0.650587954 1 21.13896027 S(ph)LS(ph)GSS(ph)PCPK ddPTM_HeLa_A486_30min_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)LS(0.987)GS(0.211)S(0.802)PCPK 95.401 0.0019712 1156400000 355220 371240 212170 282000 380130 511520 624930 595730 330330 727020 TRUE FALSE FALSE 330320.9124 341821.5904 294327.9061 656510.2515 332450.5508 448413.8632 468565.9042 460095.2837 358963.2704 544969.4599 0.606127383 0.627230727 0.540081468 1.204673472 0.610035195 0.822823839 0.859802133 0.844258839 0.658685113 1 19.05581586 S(ph)LS(ph)GSSPCPK ddPTM_HeLa_A485_30min_R1 4 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)LS(0.896)GS(0.016)S(0.088)PCPK;S(1)LS(0.973)GS(0.012)S(0.015)PCPK;S(1)LS(0.997)GS(0.002)S(0.001)PCPK;S(1)LS(0.994)GS(0.004)S(0.003)PCPK ;;; 157.47 2.96E-06 3084830000 5452800 4490740 3348560 7951800 6745500 5664000 9016400 8177900 4680780 11044500 TRUE FALSE FALSE 6665756.548 5015892.979 4587331.689 8386186.699 6073894.335 5960558.282 7089972.483 6172257.203 5620169.611 8291309.409 0.803944977 0.604957882 0.553269871 1.01144298 0.732561533 0.718892275 0.855108902 0.744424903 0.677838606 1 22.98316853 -14 0.295862292 3.03250417 0.731542148 0.274675431 0.122521332 366.4559314 3.424713703 461.5868014 0.13067244 1.00E-14 14 -2.300962021 S(ph)LS(ph)GSSPCPK ddPTM_HeLa_A486_30min_R1 2 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)LS(0.758)GS(0.156)S(0.087)PCPK;S(1)LS(0.792)GS(0.078)S(0.13)PCPK ; 160.22 1.28E-06 827360000 2426320 2445980 1322580 1245920 2575280 2839340 3436830 3160670 2016590 3498950 TRUE FALSE FALSE 2256247.498 2252151.637 1834718.396 2900564.725 2252264.369 2489051.099 2576898.783 2441054.438 2191389.645 2622790.146 0.860247055 0.858685412 0.699529239 1.105908046 0.858728394 0.949008865 0.982502846 0.930709017 0.835518483 1 21.32267095 -5.248536248 24.99548585 0.946169843 0.811407069 0.397588642 0.081858508 843.9036278 1634777.851 0.021592639 0.037090509 5.64E-06 5.248536248 -0.134762773 S(ph)LS(ph)PGVSR ddPTM_HeLa_A485_30min_R1 1 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(1)LS(1)PGVSR 92.866 0.0072194 2228500000 3590500 4040500 3081500 3543100 3572800 3925300 4433500 3838500 3099700 4084400 TRUE FALSE FALSE 4389194.338 4513001.327 4221475.082 3736650.581 3217079.487 4130822.638 3486246.507 2897101.856 3721781.358 3066234.248 1.431460868 1.471838406 1.376762093 1.218644852 1.049195602 1.347197345 1.136979834 0.944840355 1.213795508 1 21.54803649 -4.360455689 0.329215526 1.026987023 1.83842591 0.628706293 0.107129798 4.296942098 0.395424544 0.113540502 1.39796398 4.36E-05 4.360455689 0.811438887 S(ph)LS(ph)PGVSR ddPTM_HeLa_A486_30min_R1 3 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(1)LS(1)PGVSR;S(1)LS(1)PGVSR;S(1)LS(1)PGVSR ;; 135.8 0.0010011 5370170000 7994120 7900930 4682030 2301740 6024130 6909890 7001170 6624900 6249100 9362660 TRUE FALSE FALSE 7433773.47 7274831.532 6495037.405 5358567.043 5268527.443 6057418.026 5249403.215 5116554.891 6790777.02 7018188.995 1.059215344 1.0365682 0.925457751 0.763525611 0.750696148 0.863102722 0.747971196 0.72904205 0.967596772 1 22.74266737 -4.94016739 2.918879164 0.815324275 1.051142698 0.476434092 0.089025489 0.193926454 3.331323643 0.02359949 0.056582429 1.15E-05 4.94016739 0.235818423 S(ph)LS(ph)PILPGR ddPTM_HeLa_A486_30min_R1 2 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 2 0 S(1)LS(1)PILPGR;S(1)LS(1)PILPGR ; 86.014 0.0027769 28350000 103651 101383 73806 42620 114236 98205 120055 120714 83986 112605 TRUE FALSE FALSE 96385.60015 93349.04185 102385.6598 99221.5139 99907.45567 86089.46558 90015.96919 93230.05737 91265.9741 84407.97506 1.141901581 1.105926801 1.212985618 1.17549928 1.183625784 1.019920991 1.06643915 1.104517166 1.081248236 1 16.36509169 -6.253751208 24.9828462 1.061708308 1.16412383 0.6712328 0.038169111 396.4700503 1288337.259 0.013236516 0.013000599 5.58E-07 6.253751208 0.102415522 S(ph)LS(ph)PKPR ddPTM_HeLa_A485_30min_R1 4 SLSPKPR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR ;;; 86.624 0.0086218 6130116000 3152020 2410310 1771330 6049300 3821340 3057830 5370320 4765530 2367700 7585600 TRUE FALSE FALSE 3853175.975 2692174.788 2426618.678 6379757.941 3440873.972 3217933.25 4222907.261 3596776.295 2842875.672 5694649.523 0.676630925 0.472755132 0.426122568 1.12030739 0.604229278 0.565080123 0.741557008 0.631606261 0.499218725 1 22.44117562 -11.0119944 2.764624219 1.388177298 0.640417059 0.256342885 0.185166931 68507029.18 27864258.61 168984056.8 0.047596351 9.73E-12 11.0119944 -0.747760239 S(ph)LS(ph)PKPR ddPTM_HeLa_A486_30min_R1 6 SLSPKPR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR;S(1)LS(1)PKPR ;;;;; 130.66 0.0018406 9269830000 6987160 6295580 3098010 5004650 5895320 8224050 10791280 9151860 5183860 12955120 TRUE FALSE FALSE 6497396.166 5796695.313 4297642.44 11651078.12 5155873.994 7209450.327 8091187.605 7068181.262 5633201.159 9711073.628 0.669070838 0.596916009 0.442550701 1.199772401 0.530927289 0.742394776 0.833191871 0.727847562 0.580080161 1 23.21119937 -11.63665211 2.155681963 7.90599638 0.7071134 0.168866621 0.197748956 6358882.486 366590.8117 215343142 0.050954326 2.31E-12 11.63665211 -7.19888298 S(ph)LS(ph)PLGGR ddPTM_HeLa_A485_30min_R1 1 SLSPLGGR 8 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 S(1)LS(1)PLGGR 68.485 0.037406 244350000 520300 402990 385530 666990 489330 393360 489230 394350 397730 731920 TRUE FALSE FALSE 636038.94 450116.175 528153.5902 703425.9748 440610.5871 413955.7213 384702.0139 297635.0442 477550.7628 549465.814 1.157558712 0.81918868 0.96121283 1.280199708 0.801888991 0.753378483 0.700138214 0.541680732 0.869118243 1 19.0676702 -5.975472788 24.42518575 0.743890716 1.032310822 0.414798719 0.158675449 167.5105172 166812.5495 0.048782573 0.055311604 1.06E-06 5.975472788 0.288420106 S(ph)LS(ph)PLGGR ddPTM_HeLa_A486_30min_R1 2 SLSPLGGR 8 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 S(1)LS(1)PLGGR;S(1)LS(1)PLGGR ; 91.095 0.0078538 259924000 867910 993600 566060 321394 706890 893150 871750 786330 815880 1056060 TRUE FALSE FALSE 807073.9909 914863.5174 785253.5916 748221.4744 618225.2647 782962.2339 653628.9296 607299.8245 886601.1353 791615.7022 1.019527517 1.155691474 0.991963132 0.94518271 0.780966399 0.989068599 0.825689697 0.767164955 1.119989324 1 19.5944407 -5.102581995 2.706800783 0.900907735 1.086420433 0.270483247 0.107495643 0.31065072 4.410174 0.029489734 0.061116752 7.90E-06 5.102581995 0.185512698 S(ph)LS(ph)PLGGRDDS(ph)PVSHR ddPTM_HeLa_A485_30min_R1 3 SLSPLGGRDDSPVSHR 16 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 S(1)LS(1)PLGGRDDS(0.996)PVS(0.004)HR;S(1)LS(1)PLGGRDDS(0.999)PVS(0.001)HR;S(1)LS(1)PLGGRDDS(0.993)PVS(0.007)HR ;; 129.93 3.13E-05 2339020000 1053610 1177100 1072930 1531700 1655700 1304200 1674940 1466870 1217000 1996130 TRUE FALSE FALSE 1287981.91 1314751.606 1469851.455 1615372.893 1490852.694 1372485.895 1317075.386 1107117.833 1461240.737 1498531.527 0.859496038 0.87735999 0.980861216 1.077970575 0.994875762 0.915887234 0.878910695 0.738801829 0.975115111 1 20.51511801 -6.530357615 4.060687304 0.877578155 0.961437274 0.076983132 0.087387078 0.425961821 16.31736379 0.035509926 0.028404125 2.95E-07 6.530357615 0.083859119 S(ph)LS(ph)PLGGRDDS(ph)PVSHR ddPTM_HeLa_A486_30min_R1 2 SLSPLGGRDDSPVSHR 16 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 S(1)LS(1)PLGGRDDS(0.995)PVS(0.005)HR;S(1)LS(1)PLGGRDDS(1)PVSHR ; 162.82 1.35E-11 3346000000 856740 899910 627560 378251 975250 936300 1104900 1016120 826080 1109080 TRUE FALSE FALSE 796686.9502 828597.8542 870568.0386 880587.4437 852925.0512 820788.8256 828442.3336 784771.6577 897685.2795 831359.1491 0.95829456 0.996678578 1.047162396 1.059214233 1.025940536 0.987285491 0.99649151 0.943962256 1.079780358 1 19.66511233 -6.253797395 24.17948582 0.997688288 1.020273674 0.030937681 0.04050952 1178.392585 3728481.293 0.013771259 0.013522871 5.57E-07 6.253797395 0.022585385 S(ph)LS(ph)PQEDALTGSR ddPTM_HeLa_A486_30min_R1 1 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 2 0 S(1)LS(1)PQEDALTGSR 82.102 0.0018771 0 188190 189150 143900 101180 251710 215060 238980 247320 160330 276080 TRUE FALSE FALSE 174998.8528 174161.0651 199621.9338 235552.1534 220138.1847 188528.0838 179184.6763 191010.635 174227.5335 206947.771 0.845618447 0.841570142 0.96460055 1.138220297 1.063737887 0.910993546 0.86584492 0.922989574 0.841891327 1 17.65890718 -9.771594276 13.75405328 0.999999993 0.938069323 0.040718695 0.094785669 0 0 0.10325896 0.025043976 1.69E-10 9.771594276 -0.06193067 S(ph)LS(ph)PSHLTEDR ddPTM_HeLa_A485_30min_R1 1 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.993)LS(0.643)PS(0.293)HLT(0.07)EDR 73.881 0.023122 572670000 418540 531180 487820 514330 655400 533750 718010 856440 487860 703190 TRUE FALSE FALSE 511642.7791 593296.8803 668284.9179 542426.5455 590146.0748 561696.3247 564601.2979 646396.7472 585769.0271 527897.6743 0.969208246 1.123886142 1.265936469 1.027522135 1.11791755 1.064025003 1.069527913 1.224473565 1.10962608 1 19.00989878 S(ph)LS(ph)PVAAPPLREPR ddPTM_HeLa_A485_30min_R1 2 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 2 0 S(1)LS(1)PVAAPPLREPR;S(1)LS(1)PVAAPPLREPR ; 92.457 0.0050552 512100000 484830 570620 439440 609510 671020 538860 766830 747850 475500 774840 TRUE FALSE FALSE 592678.7609 637349.0453 602007.1426 642805.9879 604210.8927 567073.8764 602990.5061 564438.6149 570928.4885 581686.6479 1.018896966 1.095691379 1.034933748 1.10507262 1.0387223 0.97487862 1.036624286 0.97034824 0.981505232 1 19.14988266 -6.063502119 5.103752029 0.994159185 1.064881302 0.570108798 0.029233622 0.15142329 7.87080253 0.009208464 0.009383589 8.64E-07 6.063502119 0.070722117 S(ph)LS(ph)PVAAPPLREPR ddPTM_HeLa_A486_30min_R1 4 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 2 0 S(1)LS(1)PVAAPPLREPR;S(1)LS(1)PVAAPPLREPR;S(1)LS(1)PVAAPPLREPR;S(1)LS(1)PVAAPPLREPR ;;; 104.84 0.00041656 1215070000 1250380 1289610 836650 509768 1161000 1515980 1642040 1712810 1209960 1840130 TRUE FALSE FALSE 1162734.819 1187416.607 1160623.286 1186765.666 1015376.554 1328953.801 1231184.224 1322840.553 1314840.307 1379349.471 0.842958832 0.860852621 0.841428014 0.860380702 0.736127121 0.963464176 0.892583243 0.959032197 0.953232183 1 20.39555659 -6.291673105 24.97477771 0.947284444 0.832661276 0.692864645 0.041558615 425.6396974 351601.2852 0.014430653 0.012728079 5.11E-07 6.291673105 -0.114623168 S(ph)LS(ph)RS(ph)PLPSR ddPTM_HeLa_A485_30min_R1 1 SLSRSPLPSR 10 1 Q9NYV4;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 3 0 S(1)LS(0.998)RS(0.998)PLPS(0.004)R 44.13 0.0097473 0 111520 123970 100230 140760 159280 150730 178160 216600 128240 194330 TRUE FALSE FALSE 136327.2393 138467.2131 137309.2479 148449.3624 143421.5239 158621.9897 140094.6606 163478.5104 153976.5917 145887.1074 0.934470782 0.949139479 0.941202073 1.017563272 0.983099374 1.08729272 0.960295005 1.1205823 1.055450303 1 17.15449287 -5.527896815 0.880562921 1.05012583 0.929518386 0.47158191 0.044516268 0.557279129 0.879044676 0.020021182 0.044461551 2.97E-06 5.527896815 -0.120607444 S(ph)LS(ph)YS(ph)PVER ddPTM_HeLa_A485_30min_R1 2 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)LS(0.855)Y(0.426)S(0.719)PVER;S(1)LS(0.972)Y(0.102)S(0.926)PVER ; 117.93 0.00045816 601380000 563700 726920 545170 863330 884060 800160 952760 1007810 659800 1121170 TRUE FALSE FALSE 689093.1203 811926.9706 746851.0694 910491.5318 796039.8823 842055.1403 749195.0427 760643.0173 792215.808 841682.9526 0.818708658 0.964647042 0.887330636 1.081751186 0.945771659 1.000442195 0.890115501 0.903716791 0.941228292 1 19.68291737 -4.258860807 24.3711486 0.954816811 0.818708587 0.350149398 0.056524759 197.6307153 1867729.717 0.014136017 0.09283269 5.51E-05 4.258860807 -0.136108223 S(ph)LS(ph)YS(ph)PVER ddPTM_HeLa_A486_30min_R1 2 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)LS(0.969)Y(0.237)S(0.794)PVER;S(1)LS(0.799)Y(0.352)S(0.849)PVER ; 91.202 0.0027494 564720000 840110 903910 591570 449910 818920 868590 930260 958850 779570 1216870 TRUE FALSE FALSE 781222.6273 832280.8796 820641.7468 1047413.217 716203.4175 761432.197 697499.1087 740540.7865 847143.7553 912157.8315 0.856455539 0.912430778 0.899670779 1.148280682 0.785174882 0.834759261 0.76466932 0.811855976 0.928724971 1 19.79892395 S(ph)LSAMDVEK ddPTM_HeLa_A486_30min_R1 1 SLSAMDVEK 9 0 F8VY01;Q6ZV73-2;Q6ZV73 F8VY01 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" 1 0 S(0.985)LS(0.015)AMDVEK 79.659 0.0084407 61727000 75107 71257 49990 27367 78042 71514 82594 85257 59516 82764 TRUE FALSE FALSE 69842.38715 65610.33581 69347.46678 63711.75905 68253.24465 62691.32978 61928.10761 65845.84225 64674.8948 62039.3557 1.125775508 1.057559916 1.117797985 1.026957136 1.100160437 1.01050904 0.998206814 1.061355997 1.042481729 1 15.92089608 -1 0.210624242 1.007620853 1.55528909 0.477992736 0.032475375 47.12007728 0.587105618 0.054151549 8.656273897 0.1 1 0.547668237 S(ph)LSAPLHPEFEEVYR ddPTM_HeLa_A485_30min_R1 1 SLSAPLHPEFEEVYR 15 0 Q53HC0-2;Q53HC0 Q53HC0-2 CCDC92 Coiled-coil domain-containing protein 92 1 0 S(0.5)LS(0.5)APLHPEFEEVYR 90.654 0.00085213 44030000 51516 78460 87930 66875 112830 96893 110140 123910 93538 98046 TRUE FALSE FALSE 62975.55647 87635.21449 120458.9661 70528.21191 101596.249 101966.1677 86607.68924 93520.87822 112310.2186 73604.9366 0.85558876 1.19061599 1.636560965 0.958199479 1.380291238 1.385316969 1.176655986 1.270578884 1.525851713 1 16.16751491 -4.317279753 4.061958783 1.2978164 0.83825625 0.294331994 0.200890711 0.236532169 7.288435881 0.047608143 0.275416165 4.82E-05 4.317279753 -0.459560151 S(ph)LSAPLHPEFEEVYR ddPTM_HeLa_A486_30min_R1 2 SLSAPLHPEFEEVYR 15 0 Q53HC0-2;Q53HC0 Q53HC0-2 CCDC92 Coiled-coil domain-containing protein 92 1 0 S(0.547)LS(0.453)APLHPEFEEVYR;S(0.558)LS(0.442)APLHPEFEEVYR ; 126.19 1.87E-05 99920000 165060 189985 158771 66719 226670 204460 240240 256130 184732 226750 TRUE FALSE FALSE 153490.1464 174929.8967 220251.3832 155325.2038 198238.935 179235.804 180129.411 197814.7903 200744.7185 169970.3241 0.903040852 1.02917905 1.295822576 0.913837193 1.166314979 1.054512339 1.059769768 1.163819575 1.181057456 1 17.37492336 -4.428645283 4.558949512 1.105539105 0.915759894 0.267765529 0.101294778 0.279612043 9.348661033 0.024166648 0.107111402 3.73E-05 4.428645283 -0.189779211 S(ph)LSDFTGPPQLQALK ddPTM_HeLa_A485_30min_R1 2 SLSDFTGPPQLQALK 15 0 O95425-3;O95425;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(0.5)LS(0.5)DFTGPPQLQALK;S(0.981)LS(0.019)DFTGPPQLQALK ; 205.68 7.14E-23 333890000 91450 82566 79801 100766 100436 101941 125589 125448 85566 145130 TRUE FALSE FALSE 111792.737 92221.37547 109322.7107 106270.5914 90436.23919 107278.4731 98755.88418 94681.68131 102738.3113 108951.7619 1.026075531 0.846442259 1.003404707 0.975391215 0.830057611 0.98464193 0.906418423 0.869023866 0.942970628 1 16.73333 -4.22013082 23.20142951 0.926374682 1.026076311 0.187428039 0.060647317 17619.71404 9895789.525 0.014467132 4.635595891 6.02E-05 4.22013082 0.099701629 S(ph)LSDFTGPPQLQALK ddPTM_HeLa_A486_30min_R1 1 SLSDFTGPPQLQALK 15 0 O95425-3;O95425;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(0.998)LS(0.002)DFTGPPQLQALK 197.88 3.22E-25 69267000 94501 93171 61086 46496 86362 95748 97281 110180 77006 115560 TRUE FALSE FALSE 87876.9679 85787.79064 84740.13514 108245.0378 75529.67267 83935.58525 72940.26487 85094.41921 83680.94208 86623.02383 1.014475875 0.990357838 0.978263415 1.249610473 0.871935305 0.96897547 0.842042469 0.982353368 0.9660358 1 16.40246291 S(ph)LSDIK ddPTM_HeLa_A486_30min_R1 1 SLSDIK 6 0 O14545;F8VNX8 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 S(0.997)LS(0.003)DIK 71.501 0.027547 98903000 370720 402120 226380 158210 370410 427670 441520 445880 317800 452160 TRUE FALSE FALSE 344734.4424 370254.5467 314040.3987 368320.8755 323949.7239 374908.4236 331047.0261 344362.8575 345347.1599 338936.1929 1.017107201 1.092401916 0.926547253 1.086696798 0.955783804 1.106132751 0.97672374 1.016010874 1.018914967 1 18.37065418 -7.404934983 0.00369164 0.041151537 1.991214886 0.017094194 0.056313327 38068.78293 144.9831292 38281.22273 38295.88862 3.94E-08 7.404934983 1.950063349 S(ph)LSDPSR ddPTM_HeLa_A485_30min_R1 1 SLSDPSR 7 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.5)LS(0.5)DPSR 74.301 0.012688 0 539670 644300 588730 524910 788170 637780 740880 797280 602570 793290 TRUE FALSE FALSE 659717.7297 719645.2803 806525.7261 553584.5042 709697.0274 671173.1746 582584.9356 601745.8299 723500.2719 595537.4024 1.10776876 1.208396446 1.354282238 0.929554553 1.19169178 1.127004235 0.978250792 1.010424916 1.214869577 1 19.18383259 -5.259749999 24.99999793 1.069281639 1.221973869 0.332188473 0.103111107 183.4672157 2714980.785 0.028369258 0.045938277 5.50E-06 5.259749999 0.15269223 S(ph)LSDS(ph)ESDDSK ddPTM_HeLa_A485_30min_R1 3 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 S(1)LS(0.002)DS(0.998)ESDDSK;S(1)LSDS(1)ESDDSK;S(0.502)LS(0.498)DS(0.99)ES(0.01)DDSK ;; 307.15 1.12E-44 2460710000 3464720 2236040 1722350 7977290 3979270 2712220 5280230 4011280 2458260 9867030 TRUE FALSE FALSE 4235435.011 2497525.427 2359518.938 8413069.153 3583079.907 2854227.645 4152065.725 3027507.291 2951610.234 7407361.01 0.571787308 0.337168045 0.318537052 1.13577145 0.483718817 0.385323146 0.560532384 0.408716044 0.398469877 1 22.82052822 -11.1844383 2.333762443 2.313369123 0.512642334 0.29934822 0.224372984 9864168.875 2341019.97 68335415.77 0.058898297 6.54E-12 11.1844383 -1.800726789 S(ph)LSDS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 S(0.999)LS(0.004)DS(0.997)ESDDSK 231.36 2.99E-18 1986400000 509030 592880 267480 444810 526780 830650 928950 922360 448340 1205100 TRUE FALSE FALSE 473349.6256 545898.0296 371055.4194 1035540.159 460706.3404 728172.8484 696516.8846 712358.763 487202.4722 903335.1161 0.524002241 0.604313969 0.410761646 1.146352158 0.510006012 0.806093813 0.77105038 0.78858748 0.539337466 1 19.78490177 -7.56016901 0.057112738 1.535159362 3.80E-25 0.203477693 0.199179669 51.9980785 2.93380088 39.07437517 37.78752707 2.75E-08 7.56016901 -1.535159362 S(ph)LSDSESDDSK ddPTM_HeLa_A485_30min_R1 7 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.999)LS(0.001)DSESDDSK;S(0.696)LS(0.304)DSESDDSK;S(0.985)LS(0.015)DSESDDSK;S(1)LSDSESDDSK;S(0.987)LS(0.01)DS(0.003)ESDDSK;S(0.99)LS(0.01)DSESDDSK;S(0.983)LS(0.017)DSESDDSK ;;;;;; 324.67 4.48E-66 7605470000 3630830 2538420 1859393 5717550 3755890 2803140 4452590 3443180 2426860 6935250 TRUE FALSE FALSE 4438495.607 2835266.138 2547259.846 6029885.279 3381940.404 2949908.076 3501257.772 2598734.706 2913908.542 5206419.809 0.852504364 0.544571172 0.489253641 1.158163479 0.649571208 0.566590514 0.672488562 0.499140446 0.559676063 1 22.31186021 -5.974535784 24.99874924 0.626748391 0.748439706 0.04148544 0.21289744 686.3410824 673791.9577 0.06611316 0.074962977 1.06E-06 5.974535784 0.121691315 S(ph)LSDSESDDSK ddPTM_HeLa_A486_30min_R1 6 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.698)LS(0.302)DSESDDSK;S(0.999)LS(0.001)DSESDDSK;S(0.983)LS(0.017)DSESDDSK;S(0.989)LS(0.011)DSESDDSK;S(0.954)LS(0.046)DSESDDSK;S(0.999)LS(0.001)DSESDDSK ;;;;; 316.12 9.21E-55 9820510000 5305820 5850550 2781710 3275980 5147860 7054920 8672790 7861160 4540200 8944370 TRUE FALSE FALSE 4933909.417 5386931.111 3858862.609 7626646.999 4502167.397 6184555.7 6502766.211 6071345.476 4933748.192 6704641.534 0.735894588 0.803462957 0.575550921 1.137517488 0.671500091 0.922428987 0.969890214 0.905543636 0.735870541 1 22.67672877 -5.239104043 24.98830509 0.895734028 0.714818863 0.318959011 0.133855668 1038.189068 1161502.643 0.034736424 0.060107504 5.77E-06 5.239104043 -0.180915165 S(ph)LSDSESDDSKSK ddPTM_HeLa_A485_30min_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.998)LS(0.002)DSESDDSKSK 119 5.96E-05 2301600000 283300 316670 196080 349170 355930 435850 664940 936910 241890 407550 TRUE FALSE FALSE 346319.1076 353701.8018 268618.1516 368244.273 320492.3595 458670.432 522870.1369 707131.3535 290435.1043 305955.2854 1.131927194 1.156057171 0.87796539 1.203588532 1.047513721 1.499142044 1.708975664 2.311224506 0.949273041 1 18.2229613 -6.337139818 4.054306835 1.601203696 1.081420176 0.212975523 0.370197608 0.289427179 9.110379509 0.130409721 0.115273328 4.60E-07 6.337139818 -0.51978352 S(ph)LSDSESDDSKSK ddPTM_HeLa_A486_30min_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.999)LS(0.001)DSESDDSKSK 170.49 2.11E-12 377520000 868830 639530 387270 421020 752980 633090 995980 1005900 478390 1238400 TRUE FALSE FALSE 807929.5036 588851.3137 537231.3155 980155.8372 658534.2271 554985.7926 746775.2696 776878.5286 519857.2304 928296.5794 0.870335539 0.634335326 0.5787281 1.055864967 0.709400683 0.597853967 0.804457634 0.836886127 0.560012007 1 19.82422628 -11.16599748 2.369061885 1.642996456 0.74003382 0.217565427 0.148664629 9575393.616 2257378.995 33059635.05 0.039000528 6.82E-12 11.16599748 -0.902962636 S(ph)LSEGLYPYPPEMGKPATGDFGYR ddPTM_HeLa_A485_30min_R1 1 SLSEGLYPYPPEMGKPATGDFGYR 24 1 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5 F8VV64 TNS2 Tensin-2 1 0 S(0.5)LS(0.5)EGLYPYPPEMGKPATGDFGYR 88.001 0.0015049 133150000 43225 48705 44847 52266 68785 49012 69297 68365 55806 82253 TRUE FALSE FALSE 52840.25213 54400.62607 61437.77154 55121.15924 61936.52388 51578.19253 54491.12985 51598.37656 67005.75232 61748.84085 0.855728648 0.880998336 0.994962346 0.892667109 1.003039458 0.835290053 0.882464012 0.835616926 1.085133768 1 15.91412443 -7.767104993 24.99999972 1.042566922 0.901057398 0.4941588 0.058586144 125.9544947 555756.2107 0.051531491 0.014754035 1.71E-08 7.767104993 -0.141509524 S(ph)LSEGLYPYPPEMGKPATGDFGYR ddPTM_HeLa_A486_30min_R1 1 SLSEGLYPYPPEMGKPATGDFGYR 24 1 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5 F8VV64 TNS2 Tensin-2 1 0 S(0.5)LS(0.5)EGLYPYPPEMGKPATGDFGYR 45.269 0.026953 107530000 29642 31587 18676 10289 33778 31763 37095 37383 25791 37808 TRUE FALSE FALSE 27564.24887 29083.93108 25907.84736 23953.31198 29541.24827 27844.404 27813.43865 28871.70697 28026.58465 28340.63071 0.972605344 1.026227376 0.914159167 0.845193328 1.042363826 0.982490626 0.981398012 1.018739041 0.988918875 1 14.79058424 S(ph)LSEMEIGMVVGGPEASAAATGGYGPVSGAVSGAKPGKK ddPTM_HeLa_A486_30min_R1 2 SLSEMEIGMVVGGPEASAAATGGYGPVSGAVSGAKPGKK 39 2 P11831 P11831 SRF Serum response factor 1 0 S(0.531)LS(0.469)EMEIGMVVGGPEASAAATGGYGPVSGAVSGAKPGKK;S(0.5)LS(0.5)EMEIGMVVGGPEASAAATGGYGPVSGAVSGAKPGKK ; 184.84 8.74E-22 277320000 291772 215158 123628 148653 292340 302820 414840 417720 218307 426790 TRUE FALSE FALSE 271320.2895 198108.0965 171500.0725 346071.6965 255671.9912 265461.1472 311042.6443 322614.2748 237230.0265 319919.0061 0.848090562 0.619244536 0.53607341 1.081747849 0.799177249 0.829776107 0.972254347 1.008424847 0.741531519 1 18.28734718 -5.255540401 24.99917821 0.912848679 0.662947009 0.467987934 0.122573623 426.7142613 1808359.768 0.033123033 0.055455458 5.55E-06 5.255540401 -0.249901671 S(ph)LSEQPVMDTATATEQAK ddPTM_HeLa_A485_30min_R1 1 SLSEQPVMDTATATEQAK 18 0 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 S(0.579)LS(0.421)EQPVMDTATATEQAK 131.48 7.62E-06 269610000 216150 194090 135780 261830 247600 226690 312990 288830 204820 313540 TRUE FALSE FALSE 264231.8218 216787.1371 186010.6723 276133.1099 222948.0746 238559.1379 246117.1296 217993.9896 245925.4953 235380.2483 1.122574318 0.921008193 0.79025608 1.173136285 0.947182596 1.013505337 1.045615048 0.926135439 1.0448009 1 17.84463374 -5.259004796 24.99995554 1.015981881 0.942252414 0.113068602 0.097746432 518.0918773 5320097.829 0.026589238 0.04339828 5.51E-06 5.259004796 -0.073729467 S(ph)LSFPKLDSDDSNQK ddPTM_HeLa_A485_30min_R1 1 SLSFPKLDSDDSNQK 15 1 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 S(0.315)LS(0.315)FPKLDS(0.315)DDS(0.055)NQK 53.773 0.026123 480910000 247510 502750 361000 55759 576370 548050 430500 820500 396040 89030 TRUE FALSE FALSE 302567.7456 561542.2392 494548.9225 58804.97298 518984.579 576745.0506 338520.1581 619271.0885 475521.5953 66836.45948 4.526986438 8.401735274 7.399388393 0.879833753 7.764992088 8.629198121 5.064902611 9.26546818 7.114703547 1 16.02834769 S(ph)LSFPKLDSDDSNQK ddPTM_HeLa_A486_30min_R1 1 SLSFPKLDSDDSNQK 15 1 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 S(0.327)LS(0.327)FPKLDS(0.327)DDS(0.018)NQK 47.204 0.036152 215490000 136690 146510 152420 6543.3 257950 94469 85053 131210 125860 31298 TRUE FALSE FALSE 127108.7369 134900.014 211441.1059 15233.13308 225595.5057 82814.37527 63771.8398 101336.3473 136769.6461 23460.77708 5.417925264 5.750023264 9.012536336 0.649302153 9.6158582 3.529907597 2.718232204 4.319394321 5.829715088 1 14.51796318 -8.580915713 0.218357478 1.64E-12 6.720043576 0.215835936 2.522228384 9.635870032 1.080047287 19.22979038 7.434791746 2.62E-09 8.580915713 6.720043576 S(ph)LSGS(ph)SPCPK ddPTM_HeLa_A485_30min_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)LS(0.005)GS(0.71)S(0.287)PCPK 91.961 0.0061437 1049600000 1095700 1000700 786280 1512900 1400700 1140300 1790200 1589400 900500 1905300 TRUE FALSE FALSE 1339434.685 1117723.16 1077157.692 1595545.896 1261241.39 1200004.345 1407709.145 1199597.158 1081222.09 1430343.774 0.936442489 0.781436729 0.753076086 1.115498193 0.881775006 0.83896219 0.984175392 0.838677512 0.75591764 1 20.4479305 S(ph)LSGS(ph)SPCPK ddPTM_HeLa_A486_30min_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)LS(0.05)GS(0.649)S(0.301)PCPK 169.57 6.23E-07 940400000 1884900 1839200 861780 973410 1841200 2199700 2719300 2612400 1454600 2888500 TRUE FALSE FALSE 1752778.244 1693455.094 1195484.295 2266147.673 1610259.527 1928323.379 2038902.378 2017613.548 1580685.899 2165200.799 0.80952226 0.782123808 0.552135532 1.046622408 0.743699858 0.890597944 0.941668957 0.931836691 0.730041251 1 21.04606939 -5.2640472 24.99998906 0.890050194 0.721346867 0.35301491 0.113197727 266.2878331 2552787.717 0.030611788 0.047861038 5.44E-06 5.2640472 -0.168703327 S(ph)LSGSS(ph)PCPK ddPTM_HeLa_A485_30min_R1 2 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)LSGS(0.001)S(0.999)PCPK;S(1)LSGSS(1)PCPK ; 265.75 1.68E-26 4882400000 8532500 7881000 5898000 12849900 11568300 8671200 13823000 13265300 7597400 16038000 TRUE FALSE FALSE 10430525.19 8802614.394 8079915.636 13551857.5 10416519.43 9125210.624 10869603.13 10011964.38 9122128.493 12040021.76 0.866321125 0.731112831 0.671088126 1.125567526 0.865157858 0.75790649 0.902789326 0.831557 0.757650499 1 23.52133466 -11.41691959 2.159412188 2.306517479 0.835665635 0.149391762 0.118543253 8097723.187 685596.5203 51815631.98 0.030609792 3.83E-12 11.41691959 -1.470851843 S(ph)LSGSS(ph)PCPK ddPTM_HeLa_A486_30min_R1 6 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)LSGS(0.031)S(0.969)PCPK;S(1)LSGSS(1)PCPK;S(1)LSGS(0.037)S(0.963)PCPK;S(1)LS(0.109)GS(0.061)S(0.831)PCPK;S(1)LSGS(0.001)S(0.999)PCPK;S(1)LS(0.064)GS(0.172)S(0.763)PCPK ;;;;; 221.09 1.18E-16 9080390000 17723500 18697100 9734250 9101430 17927600 20956900 27005700 25150600 14722600 27082000 TRUE FALSE FALSE 16481174.17 17215473.7 13503612.29 21188589 15678953.24 18371450.75 20248588.22 19424357.41 15998766.82 20300490.93 0.811860868 0.848032383 0.665186489 1.043747616 0.772343551 0.904975688 0.997443278 0.956841757 0.788097533 1 24.27501128 -5.259117476 24.9999437 0.917581354 0.782327168 0.343463497 0.093573725 255.403781 2749917.557 0.025271684 0.041236231 5.51E-06 5.259117476 -0.135254186 S(ph)LSLDPGQSLEPHPEGPQR ddPTM_HeLa_A486_30min_R1 1 SLSLDPGQSLEPHPEGPQR 19 0 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 S(0.537)LS(0.463)LDPGQSLEPHPEGPQR 86.856 0.00053905 55827000 82325 86394 66984 6531.5 95829 88461 106620 114340 92620 71440 TRUE FALSE FALSE 76554.44263 79547.8248 92921.99869 15205.66208 83809.23325 77547.58123 79942.54829 88307.27802 100648.3762 53550.959 1.429562496 1.485460322 1.735206996 0.283947522 1.565037019 1.44810817 1.49283131 1.649032616 1.879487838 1 15.70862479 S(ph)LSLESTDR ddPTM_HeLa_A486_30min_R1 2 SLSLESTDR 9 0 H0Y7V8;Q5VT25-3;Q5VT25-5;Q5VT25-6;Q5VT25-4;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25;Q5VT25-2 H0Y7V8;A0A0A0MRJ1 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 0 S(1)LSLESTDR;S(1)LSLESTDR ; 163.43 1.15E-05 349030000 215419 242338 192083 106874 240114 221533 264810 260700 222192 247277 TRUE FALSE FALSE 200319.2405 223134.2543 266462.6818 248808.0731 209996.6631 194202.5108 198551.7371 201344.301 241451.7815 185357.2297 1.080719866 1.203806588 1.437562928 1.342316529 1.132929444 1.047720184 1.071184207 1.086250055 1.302629425 1 17.49994886 -5.874341305 6.218404282 1.103748181 1.273193901 0.322803722 0.113428583 0.265565242 13.50132875 0.037272233 0.042485231 1.34E-06 5.874341305 0.169445719 S(ph)LSLSLADSGHLPDVHGFNSYGSHR ddPTM_HeLa_A485_30min_R1 2 SLSLSLADSGHLPDVHGFNSYGSHR 25 0 E9PKC4;Q9Y446;Q9Y446-2;E9PRW6 E9PKC4 PKP3 Plakophilin-3 1 0 S(0.83)LS(0.164)LS(0.007)LADSGHLPDVHGFNSYGSHR;S(0.737)LS(0.132)LS(0.132)LADSGHLPDVHGFNSYGSHR ; 238.12 3.59E-49 388390000 74845 117216 124752 38479 134249 111688 124291 152498 105873 95257 TRUE FALSE FALSE 91494.01204 130923.3916 170902.9562 40581.01034 120882.6982 117535.811 97735.21249 115097.6264 127120.74 71511.18298 1.279436421 1.830810037 2.389877346 0.567477822 1.69040272 1.643600428 1.366712288 1.609505277 1.777634416 1 16.12588125 -10.41962955 3.254268089 0.992578323 1.575434006 0.132351823 0.439954565 136650498.5 189482553.7 9494008.712 0.10647848 3.81E-11 10.41962955 0.582855683 S(ph)LSLSLADSGHLPDVHGFNSYGSHR ddPTM_HeLa_A486_30min_R1 1 SLSLSLADSGHLPDVHGFNSYGSHR 25 0 E9PKC4;Q9Y446;Q9Y446-2;E9PRW6 E9PKC4 PKP3 Plakophilin-3 1 0 S(0.988)LS(0.011)LS(0.001)LADSGHLPDVHGFNSYGSHR 218.39 3.52E-38 111540000 57720 70850 69393 3761.7 84888 50198 62455 60902 68926 31316 TRUE FALSE FALSE 53674.12607 65235.58797 96263.82801 8757.427706 74240.55549 44005.08114 46828.09842 47035.94408 74900.56118 23474.26977 2.286508871 2.779025231 4.100823112 0.373064968 3.162635355 1.87460916 1.994869228 2.003723419 3.190751487 1 14.51879266 -5.237743433 24.99948308 2.034782905 3.027809364 0.235685183 0.907270149 1262.633836 1332091.024 0.235071387 0.406863328 5.78E-06 5.237743433 0.99302646 S(ph)LSNPDIASETLTLLSFLR ddPTM_HeLa_A485_30min_R1 1 SLSNPDIASETLTLLSFLR 19 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.5)LS(0.5)NPDIASETLTLLSFLR 94.856 0.00043733 693530000 26927 29097 36199 35290 53188 35217 53652 43064 33503 43847 TRUE FALSE FALSE 32916.81825 32499.64104 49590.51647 37217.80334 47892.41597 37060.90766 42188.8119 32502.48648 40226.74479 32916.74984 1.000002078 0.987328372 1.506543529 1.130664586 1.454955796 1.125898147 1.281682186 0.987414816 1.222075235 1 15.00653427 -10.06575575 5.116082116 0.999996794 1.193064167 0.094166316 0.17488515 6.35E-06 1.16E-06 0.167982108 0.040740969 8.59E-11 10.06575575 0.193067373 S(ph)LSPDEER ddPTM_HeLa_A485_30min_R1 2 SLSPDEER 8 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 S(0.744)LS(0.256)PDEER;S(0.591)LS(0.409)PDEER ; 82.287 0.0055842 0 549790 675460 618650 519430 763110 571530 680670 868430 592270 750310 TRUE FALSE FALSE 672088.8887 754449.1713 847514.3792 547805.1456 687132.089 601454.427 535239.2939 655446.1809 711133.1564 563271.5254 1.193188113 1.339405841 1.50462848 0.972541875 1.219894949 1.067787736 0.950233182 1.163641603 1.26250507 1 19.10347102 -5.26647533 24.95991981 1.096307114 1.345107314 0.488167067 0.119470701 354.8903933 1758960.415 0.033873781 0.05204104 5.41E-06 5.26647533 0.2488002 S(ph)LSPGVSR ddPTM_HeLa_A485_30min_R1 1 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.5)LS(0.5)PGVSR 81.525 0.0080094 700650000 257290 331930 364580 227180 407360 254740 289180 289440 286060 320960 TRUE FALSE FALSE 314523.2729 370746.3261 499453.3134 239590.2681 366801.8081 268077.7925 227394.3306 218454.3862 343469.6181 240950.5788 1.305343504 1.538682031 2.07284546 0.9943544 1.52231138 1.11258414 0.94373847 0.906635656 1.425477456 1 17.87837774 -5.861476571 1.282294062 1.065333022 1.584450399 0.342743874 0.282762015 0.486048152 1.678772835 0.116718065 0.151070892 1.38E-06 5.861476571 0.519117377 S(ph)LSPILPGR ddPTM_HeLa_A485_30min_R1 2 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 S(0.851)LS(0.149)PILPGR;S(0.861)LS(0.139)PILPGR ; 107.79 0.0010476 509040000 169376 200279 217059 205555 247981 189880 242623 268576 191341 236899 TRUE FALSE FALSE 207053.1069 223699.8869 297358.1567 216783.9492 223291.1409 199821.8232 190784.614 202707.3149 229741.3836 177844.4391 1.164237172 1.257840211 1.672012677 1.218952643 1.255541877 1.123576448 1.072761201 1.139801255 1.291810893 1 17.44025634 -5.861843373 2.13852443 1.134278715 1.35539162 0.309741289 0.144161991 0.396771855 3.714772442 0.051414724 0.061794201 1.37E-06 5.861843373 0.221112904 S(ph)LSPILPGR ddPTM_HeLa_A486_30min_R1 1 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 S(0.829)LS(0.171)PILPGR 134.23 0.00020053 475190000 271900 304010 265790 123500 339230 273380 309910 319790 270960 323210 TRUE FALSE FALSE 252841.2141 279919.1404 368711.0061 287514.2413 296680.6102 239653.1551 232367.2401 246980.798 294447.031 242276.1123 1.043607691 1.155372429 1.521862815 1.186721376 1.224555766 0.989173687 0.959100912 1.019418694 1.215336618 1 17.88629264 -6.249576511 20.6269873 1.032975609 1.236684465 0.345170969 0.130293207 84.6179366 147131.2442 0.045246845 0.044712807 5.63E-07 6.249576511 0.203708856 S(ph)LSPNHNTLQTLK ddPTM_HeLa_A485_30min_R1 1 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.587)LS(0.413)PNHNTLQTLK 151.39 3.93E-08 1241600000 531120 698600 550080 403230 844020 625160 833720 919250 593490 686380 TRUE FALSE FALSE 649265.8117 780295.193 753577.4827 425257.4339 759986.4053 657892.4109 655588.9111 693802.4962 712597.9992 515278.0979 1.260029903 1.514318571 1.462467522 0.825296933 1.474905315 1.276771541 1.27230114 1.346462229 1.382938654 1 18.97499175 -10.65211237 2.802985926 0.966992102 1.312323491 0.206361862 0.184044905 36272282.39 36107292.87 8695744.599 0.045036612 2.23E-11 10.65211237 0.345331389 S(ph)LSPNHNTLQTLK ddPTM_HeLa_A486_30min_R1 1 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.5)LS(0.5)PNHNTLQTLK 171.98 2.58E-12 206910000 419990 429270 309330 40548 507170 372180 444140 433820 415960 313520 TRUE FALSE FALSE 390550.8698 395253.0818 429110.8601 94397.79318 443556.0094 326264.2156 333011.4744 335048.6562 452015.7477 235012.5513 1.661829837 1.681838181 1.825906139 0.401671284 1.887371576 1.388284216 1.416994422 1.425662818 1.92336854 1 17.84237828 S(ph)LSPQEDALTGSR ddPTM_HeLa_A485_30min_R1 1 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 S(0.989)LS(0.011)PQEDALTGSR 125.73 2.98E-05 135890000 54105 78213 72080 63872 87762 69370 78335 95434 74375 80730 TRUE FALSE FALSE 66140.47059 87359.32999 98745.3915 67361.16563 79024.10713 73002.10593 61598.08731 72028.66187 89301.38029 60605.49673 1.091327918 1.441442356 1.629314119 1.111469574 1.303909899 1.204545955 1.016377897 1.188483978 1.473486484 1 15.88716103 -5.297501292 24.99863625 1.19200579 1.392769841 0.212750589 0.17756986 895.4035097 620704.629 0.050305535 0.074618193 5.04E-06 5.297501292 0.20076405 S(ph)LSPQEDALTGSR ddPTM_HeLa_A486_30min_R1 1 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 S(0.815)LS(0.185)PQEDALTGSR 162.7 8.60E-12 168710000 89134 90519 85960 28245 114100 95258 108280 105930 74108 100580 TRUE FALSE FALSE 82886.16689 83345.94478 119246.0141 65755.78742 99788.51406 83506.03647 81187.19873 81812.05144 80531.74111 75394.11333 1.099371864 1.10547019 1.581635605 0.872160763 1.323558427 1.107593588 1.07683737 1.085125188 1.06814362 1 16.20216426 -6.86405367 0.737985655 1.023827946 1.206068556 0.124272325 0.171405111 1.505162938 1.587884199 0.144555457 0.084965538 1.37E-07 6.86405367 0.18224061 S(ph)LSPS(ph)HLTEDR ddPTM_HeLa_A485_30min_R1 1 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.999)LS(0.032)PS(0.939)HLT(0.03)EDR 130.19 9.06E-05 632670000 472370 638670 546180 616320 780050 593630 810750 930560 570910 763370 TRUE FALSE FALSE 577447.0768 713356.9008 748234.7104 649988.001 702385.4831 624711.5489 637526.6393 702338.7009 685486.4003 573075.9078 1.007627557 1.244786059 1.305646774 1.134209259 1.225641269 1.090102621 1.112464563 1.225559636 1.196152885 1 19.12836672 -6.252311084 24.77330191 1.138178956 1.191020823 0.078826916 0.093354903 1784.116221 4841920.063 0.031149513 0.030718773 5.59E-07 6.252311084 0.052841867 S(ph)LSPS(ph)HLTEDR ddPTM_HeLa_A486_30min_R1 2 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(1)LS(0.006)PS(0.995)HLTEDR;S(1)LS(0.329)PS(0.665)HLT(0.006)EDR ; 152.55 1.07E-06 1033780000 1280010 1350480 983380 391030 1402060 1206770 1457530 1437820 1110870 1422130 TRUE FALSE FALSE 1190287.909 1243463.046 1364171.072 910337.6016 1226200.561 1057890.987 1092840.578 1110459.773 1207161.106 1066019.391 1.116572474 1.166454434 1.27968692 0.853959702 1.150261028 0.992374994 1.02516013 1.041688155 1.132400701 1 20.02380225 -5.239531828 24.99989695 1.033209079 1.18545958 0.423395089 0.085183846 791.1123193 902779.9179 0.022076759 0.03819579 5.76E-06 5.239531828 0.152250501 S(ph)LSPSHLTEDR ddPTM_HeLa_A485_30min_R1 2 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.626)LS(0.372)PS(0.002)HLTEDR;S(0.485)LS(0.485)PS(0.03)HLTEDR ; 205.96 5.50E-15 3330830000 320350 542440 559240 226150 543120 507390 505130 639830 482230 367690 TRUE FALSE FALSE 391610.7523 605873.6394 766126.1479 238504.0019 489045.0658 533956.1558 397204.849 482910.6893 579009.1377 276031.6498 1.418716848 2.194942644 2.775501101 0.864045851 1.771699246 1.934401929 1.438982991 1.749475792 2.097618654 1 18.07447417 -10.99891432 2.810060125 0.197852902 1.807800139 0.197542837 0.486737744 347165823.5 320378850.7 1802505262 0.122812269 1.00E-11 10.99891432 1.609947237 S(ph)LSPSHLTEDR ddPTM_HeLa_A486_30min_R1 1 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.505)LS(0.49)PS(0.003)HLT(0.001)EDR 101.43 0.0011945 614560000 575160 631430 592250 107910 771090 535970 586900 624480 535490 496550 TRUE FALSE FALSE 534844.2541 581393.1872 821585.061 251219.9335 674372.7021 469847.4707 440051.4124 482299.5363 581906.7044 372210.648 1.436939693 1.562000416 2.207312084 0.674940211 1.811803896 1.262316039 1.182264438 1.295770389 1.563380058 1 18.5057598 -5.251089982 24.99844177 1.28848248 1.718075624 0.289713103 0.341153896 988.7638017 2388304.178 0.089363661 0.152613659 5.61E-06 5.251089982 0.429593144 S(ph)LSPVAAPPLREPR ddPTM_HeLa_A485_30min_R1 1 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 S(0.857)LS(0.143)PVAAPPLREPR 52.522 0.023163 1266700000 521940 776180 778080 611480 924320 750490 840970 933830 690730 781740 TRUE FALSE FALSE 638043.7523 866947.4991 1065924.171 644883.6041 832291.4553 789784.4959 661289.8894 704806.7283 829353.1752 586866.6049 1.087204055 1.477247967 1.816297199 1.098858921 1.418195291 1.345764931 1.126814652 1.200965811 1.413188565 1 19.16267309 -6.329920741 1.096786109 1.199178738 1.417769415 0.137756268 0.216253897 1.036059265 2.586780693 0.12181073 0.103123016 4.68E-07 6.329920741 0.218590677 S(ph)LSQSFENLLDEPAYGLIQK ddPTM_HeLa_A485_30min_R1 1 SLSQSFENLLDEPAYGLIQK 20 0 Q8TC07-2;Q8TC07-3;C9JA93 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 0 S(0.371)LS(0.371)QS(0.257)FENLLDEPAYGLIQK 114.34 1.38E-05 14567000 17662 23737 18027 19310 25507 20337 25763 27278 16214 23998 TRUE FALSE FALSE 21590.85097 26512.83567 24695.93747 20364.8564 22967.43352 21401.81387 20258.52459 20588.02773 19468.00108 18015.74025 1.198443731 1.471648419 1.37079782 1.13039243 1.274853722 1.187950846 1.124490268 1.142780005 1.080610666 1 14.13697031 -6.414760917 0.382948817 1.005735383 1.389482656 0.601450761 0.083932525 1.014643193 0.322989848 0.093675231 0.146326376 3.85E-07 6.414760917 0.383747273 S(ph)LSQSFENLLDEPAYGLIQK ddPTM_HeLa_A486_30min_R1 2 SLSQSFENLLDEPAYGLIQK 20 0 Q8TC07-2;Q8TC07-3;C9JA93 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 0 S(0.333)LS(0.333)QS(0.333)FENLLDEPAYGLIQK;S(0.333)LS(0.333)QS(0.333)FENLLDEPAYGLIQK ; 77.39 0.0022075 26113000 19144.3 21359.6 13430.6 6553 22428.9 20239 20170 20098.3 16418.4 22761.5 TRUE FALSE FALSE 17802.38343 19666.98751 18631.288 15255.71517 19615.65822 17742.11796 15123.25266 15522.35583 17841.56013 17061.87225 1.04340152 1.152686365 1.091983795 0.894140745 1.149677945 1.039869347 0.886377089 0.909768612 1.045697674 1 14.05848835 -6.593441798 7.720915203 0.95356116 1.066139327 0.287148639 0.078947999 0.30848982 29.12320342 0.030682739 0.023719038 2.55E-07 6.593441798 0.112578166 S(ph)LSRTPETLLPFAEAEAFLK ddPTM_HeLa_A486_30min_R1 1 SLSRTPETLLPFAEAEAFLK 20 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 S(0.333)LS(0.333)RT(0.333)PETLLPFAEAEAFLK 149.73 7.14E-10 44107000 45410 40185 37413 30648 80269 51146 66593 66559 43337 54202 TRUE FALSE FALSE 42226.9935 37000.59425 51900.31555 71350.09286 70200.91354 44836.12653 49930.72705 51404.96867 47093.48605 40629.4664 1.039319421 0.910683736 1.277405788 1.756116907 1.727832525 1.103537174 1.228928939 1.265213975 1.159096838 1 15.3102388 -7.996251975 1.013714851 1.002876798 1.311222082 0.114118062 0.255611659 1.457674016 3.376922619 0.277991487 0.092769099 1.01E-08 7.996251975 0.308345285 S(ph)LSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SLSSPR 6 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.942)LS(0.061)S(0.997)PR 107 0.02047 770190000 778130 912680 883020 921780 1081600 854780 1105100 1158200 913280 1194000 TRUE FALSE FALSE 951222.334 1019409.987 1209685.844 972134.5073 973912.1063 899534.9591 868986.3572 874149.634 1096566.919 896357.7739 1.061208327 1.137280243 1.349556928 1.084538491 1.086521626 1.00354455 0.969463737 0.975224023 1.223358519 1 19.77371516 -5.507387071 23.09088617 1.040619479 1.18462603 0.296425043 0.096197981 315.5185648 470290.8013 0.027993887 0.039990563 3.11E-06 5.507387071 0.144006551 S(ph)LSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SLSSPR 6 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)LS(0.008)S(0.993)PR;S(0.972)LS(0.032)S(0.996)PR;S(0.996)LS(0.016)S(0.988)PR ;; 101.9 0.023802 2561980000 4795480 4900240 4482870 1891420 5685100 5443070 5612930 5478040 5001140 5820190 TRUE FALSE FALSE 4459341.616 4511927.136 6218757.319 4403321.347 4972021.747 4771559.364 4208515.546 4230809.877 5434642.842 4362776.541 1.022133858 1.034187081 1.425412753 1.009293349 1.139646209 1.09369786 0.964641555 0.969751679 1.245684438 1 22.05681515 -6.529954 23.8332761 1.040594556 1.129712861 0.075582011 0.133129156 266.2856089 896974.223 0.050923934 0.039551176 2.95E-07 6.529954 0.089118305 S(ph)LSS(ph)SPVKK ddPTM_HeLa_A486_30min_R1 3 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 0 S(0.997)LS(0.088)S(0.457)S(0.457)PVKK;S(0.999)LS(0.002)S(0.998)SPVKK;S(1)LS(0.001)S(0.499)S(0.499)PVKK ;; 169.89 2.92E-06 3038470000 7404920 6440130 2567920 4252620 5493030 8289740 11459530 10561030 4935860 11999540 TRUE FALSE FALSE 6885873.347 5929790.644 3562287.395 9900314.276 4804042.957 7267036.163 8592234.387 8156514.015 5363704.319 8994777.08 0.765541301 0.659248205 0.396039542 1.100673667 0.534092498 0.807917317 0.955247063 0.906805576 0.596313202 1 23.1006561 -5.779401899 0.886043544 0.850688537 0.646710678 0.125344875 0.199407809 1.332486808 2.265915081 0.100807266 0.16102269 1.66E-06 5.779401899 -0.203977858 S(ph)LSSGHLQGKPWK ddPTM_HeLa_A485_30min_R1 1 SLSSGHLQGKPWK 13 1 Q9BYV8-5;Q9BYV8-2;Q9BYV8 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 1 0 S(0.333)LS(0.333)S(0.333)GHLQGKPWK 72.175 0.0058178 148720000 129010 176680 130530 132200 235890 167070 229230 257450 174490 190170 TRUE FALSE FALSE 157707.8294 197341.1891 178818.4788 139421.7513 212403.9633 175817.5269 180253.1379 194309.9838 209508.5425 142764.1188 1.104674135 1.382288426 1.252544969 0.976588182 1.487796549 1.231524618 1.262594126 1.361056163 1.467515397 1 17.1232739 -5.777071759 24.99904175 1.314331694 1.198794214 0.114983515 0.160894434 560.1663573 895804.809 0.048620415 0.055315924 1.67E-06 5.777071759 -0.115537481 S(ph)LSSLR ddPTM_HeLa_A485_30min_R1 8 SLSSLR 6 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915;C9J1G1;Q70YC5-2;Q70YC5;Q70YC5-4;Q70YC5-3;Q8TF61 H0Y9X0 FRYL;ZNF365;FBXO41 Protein furry homolog-like;Protein ZNF365;F-box only protein 41 1 0 S(1)LSSLR;S(1)LSSLR;S(0.987)LS(0.013)SLR;S(0.903)LS(0.097)SLR;S(0.997)LS(0.002)SLR;S(0.998)LS(0.002)SLR;S(0.999)LS(0.001)SLR;S(1)LSSLR ;;;;;;; 189.53 0.0011181 4154100000 1858178 1859536 2104207 2000608 2348730 1785903 2336467 2055322 1930578 2629520 TRUE FALSE FALSE 2271523.285 2076992.559 2882640.733 2109896.149 2114882.194 1879410.12 1837261.738 1551251.057 2318027.296 1974029.057 1.150704078 1.052159061 1.460282828 1.068827301 1.071353123 0.952068113 0.930716664 0.7858299 1.174261994 1 20.9127118 -5.81705107 2.082458492 0.956082461 1.20469529 0.367516154 0.135128137 0.324948492 2.895207374 0.046154817 0.05735682 1.52E-06 5.81705107 0.248612829 S(ph)LSSLR ddPTM_HeLa_A486_30min_R1 8 SLSSLR 6 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915;C9J1G1;Q70YC5-2;Q70YC5;Q70YC5-4;Q70YC5-3;Q8TF61 H0Y9X0 FRYL;ZNF365;FBXO41 Protein furry homolog-like;Protein ZNF365;F-box only protein 41 1 0 S(1)LSSLR;S(1)LSSLR;S(0.994)LS(0.006)SLR;S(0.867)LS(0.133)SLR;S(0.998)LS(0.002)SLR;S(0.999)LS(0.001)SLR;S(1)LSSLR;S(0.999)LS(0.001)SLR ;;;;;;; 164.53 0.00023061 3969080000 1590954 1673082 1540863 494021 1789000 1559964 1742147 1765290 1552134 1661927 TRUE FALSE FALSE 1479436.34 1540500.889 2137526.419 1150105.854 1564606.938 1367511.502 1306243.394 1363372.003 1686674.225 1245769.662 1.187568124 1.236585652 1.715827961 0.923209073 1.255935978 1.097724197 1.048543269 1.094401353 1.353921416 1 20.24860591 -5.28710709 24.99401542 1.117408798 1.365653283 0.33317237 0.174149609 894.8246461 871336.5323 0.048267723 0.071622897 5.16E-06 5.28710709 0.248244485 S(ph)LSSPGGPSKPK ddPTM_HeLa_A486_30min_R1 1 SLSSPGGPSKPK 12 1 J3QL04;J3KRY8;J3QR12;Q9BZE9-4;Q9BZE9-3;Q9BZE9;Q9BZE9-2 J3QL04 ASPSCR1 Tether containing UBX domain for GLUT4 1 0 S(0.372)LS(0.332)S(0.296)PGGPSKPK 56.648 0.018229 376260000 188060 217330 151400 78111 216680 206800 206910 213320 187040 260780 TRUE FALSE FALSE 174877.9651 200107.9793 210026.1346 181846.3555 189501.9739 181287.1186 155138.9295 164751.6927 203252.7778 195478.9906 0.894612585 1.023680236 1.074417941 0.930260357 0.969423739 0.927399502 0.7936348 0.842810229 1.039767891 1 17.57665403 -5.986715931 1.830396547 0.903939798 0.993636827 0.097330226 0.080477945 0.612186049 4.152066678 0.030976793 0.034451959 1.03E-06 5.986715931 0.089697029 S(ph)LSSPTVTLSAPLEGAK ddPTM_HeLa_A485_30min_R1 2 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.559)LS(0.433)S(0.008)PTVTLSAPLEGAK;S(0.245)LS(0.245)S(0.245)PT(0.245)VT(0.021)LSAPLEGAK ; 124.16 1.48E-05 226956000 171890 159840 111260 235611.5 209230 206850 338250 338970 171290 385570 TRUE FALSE FALSE 210126.3375 178531.8976 152419.7039 248482.3596 188398.3265 217680.3461 265980.1243 255837.076 205666.3318 289454.4949 0.725939107 0.616787442 0.526575702 0.858450513 0.650873729 0.752036503 0.918901344 0.883859399 0.710530793 1 18.14297703 -6.662229005 0.248303985 1.013184822 0.545446255 0.475557406 0.101970195 2.430358173 0.431771041 0.227429498 0.404464012 2.18E-07 6.662229005 -0.467738567 S(ph)LSSPTVTLSAPLEGAK ddPTM_HeLa_A486_30min_R1 1 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.242)LS(0.242)S(0.242)PT(0.242)VT(0.032)LSAPLEGAK 96.414 0.00044606 70048000 73505 74440 53174 27566 83385 81432 87362 91448 63754 105500 TRUE FALSE FALSE 68352.67908 68541.10329 73764.39685 64175.04111 72926.07577 71385.74778 65503.10358 70627.2867 69280.24805 79082.11331 0.864325398 0.866708038 0.932757026 0.811498813 0.922156385 0.902678808 0.828292275 0.893088004 0.876054586 1 16.2710638 -9.224020514 1.65160182 1.000142294 0.877823846 0.509514092 0.036051441 83.3344992 109.0602788 0.113595506 0.009417724 5.97E-10 9.224020514 -0.122318448 S(ph)LSSS(ph)PVKK ddPTM_HeLa_A485_30min_R1 6 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 0 S(1)LS(0.007)S(0.179)S(0.814)PVKK;S(1)LS(0.016)S(0.121)S(0.863)PVKK;S(0.999)LS(0.003)S(0.207)S(0.791)PVKK;S(0.997)LS(0.005)S(0.127)S(0.871)PVKK;S(1)LS(0.003)S(0.144)S(0.853)PVKK;S(0.995)LS(0.017)S(0.19)S(0.797)PVKK ;;;;; 132.59 9.69E-05 8941220000 8748500 6123150 3712380 13872400 9179030 8066640 15255000 14128400 5955170 16671200 TRUE FALSE FALSE 10694573.64 6839199.128 5085743.847 14630214.09 8265133.544 8488996.797 11995644.63 10663387.75 7150317.995 12515376.65 0.854514725 0.546463708 0.406359632 1.168979128 0.660398306 0.678285363 0.958472522 0.852022919 0.571322637 1 23.57719837 -13.99999999 0.070580209 1.768942357 0.466376392 0.101793489 0.212676897 720.2744261 3.649307272 92.50242206 11.30909241 1.00E-14 13.99999999 -1.302565965 S(ph)LSSS(ph)PVKK ddPTM_HeLa_A486_30min_R1 3 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 0 S(1)LS(0.004)S(0.155)S(0.841)PVKK;S(1)LS(0.001)S(0.166)S(0.833)PVKK;S(0.988)LS(0.014)S(0.168)S(0.831)PVKK ;; 134.56 8.74E-05 3487960000 5453400 4773860 1927640 3256340 4134530 6155800 8601100 7548100 3770620 9369600 TRUE FALSE FALSE 5071144.821 4395561.948 2674073.832 7580924.086 3615938.694 5396359.984 6449013.807 5829562.404 4097460.378 7023391.174 0.722036506 0.625846096 0.380738274 1.079382295 0.514842276 0.768341083 0.918219368 0.830021034 0.583401989 1 22.74373636 -13.99999997 0.051795075 2.075189065 0.19368042 0.179094334 0.190276508 888.2874287 3.387972697 130.8771552 27.70352839 1.00E-14 13.99999997 -1.881508645 S(ph)LSSSPDKR ddPTM_HeLa_A485_30min_R1 3 SLSSSPDKR 9 1 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 Q9BVI0 PHF20 PHD finger protein 20 1 0 S(0.327)LS(0.327)S(0.242)S(0.104)PDKR;S(0.368)LS(0.368)S(0.15)S(0.113)PDKR;S(0.287)LS(0.287)S(0.213)S(0.213)PDKR ;; 74.841 0.0068559 1680470000 1105880 1053560 872190 1749670 1389980 1176370 1715820 1790580 1026920 2185260 TRUE FALSE FALSE 1351879.191 1176764.677 1194849.376 1845250.042 1251588.711 1237962.914 1349221.04 1351437.447 1233013.425 1640514.899 0.824057856 0.717314227 0.728338022 1.124799319 0.762924318 0.754618513 0.822437541 0.823788585 0.751601479 1 20.64571727 -11.41828369 2.063905752 2.360371655 0.813642943 0.204267023 0.11116142 5825666.225 575073.9806 36923972.47 0.028716651 3.82E-12 11.41828369 -1.546728712 S(ph)LSSSPDKR ddPTM_HeLa_A486_30min_R1 2 SLSSSPDKR 9 1 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 Q9BVI0 PHF20 PHD finger protein 20 1 0 S(0.359)LS(0.359)S(0.184)S(0.099)PDKR;S(0.268)LS(0.268)S(0.196)S(0.268)PDKR ; 71.03 0.0071556 585130000 1268970 1031960 710080 767960 1159450 1475750 1814570 1585800 1022310 2185870 TRUE FALSE FALSE 1180021.756 950183.7313 985041.9926 1787849.691 1014020.97 1293686.969 1360545.393 1224747.958 1110924.654 1638513.924 0.720178046 0.579905802 0.601180117 1.091140981 0.618866251 0.789548963 0.830353269 0.747474855 0.678007454 1 20.6439565 -14 0.159726897 1.891158855 0.676801778 0.229202365 0.141237687 213.3287591 1.957783595 61.12003941 0.616605845 1.00E-14 14 -1.214357076 S(ph)LSTLVILCWK ddPTM_HeLa_A485_30min_R1 2 SLSTLVILCWK 11 0 Q8N945 Q8N945 PRELID2 PRELI domain-containing protein 2 1 0 S(0.994)LS(0.003)T(0.003)LVILCWK;S(1)LSTLVILCWK ; 69.979 0.013612 301790000 402790 398540 319920 375910 485050 454070 626050 663030 380480 480850 TRUE FALSE FALSE 492389.2459 445145.7862 438271.721 396445.0114 436756.7189 477844.4031 492289.3031 500420.8529 456838.846 360982.9444 1.364023574 1.233149081 1.21410645 1.098237514 1.20990957 1.323731247 1.363746711 1.386272844 1.265541359 1 18.46157115 -6.25280552 23.70486021 1.297993502 1.216876193 0.000344961 0.117762868 774.2738758 2125821.789 0.038363354 0.037737607 5.59E-07 6.25280552 -0.081117309 S(ph)LSTLVILCWK ddPTM_HeLa_A486_30min_R1 1 SLSTLVILCWK 11 0 Q8N945 Q8N945 PRELID2 PRELI domain-containing protein 2 1 0 S(0.995)LS(0.003)T(0.003)LVILCWK 62.633 0.024738 481010000 575000 650720 472150 262570 695650 687630 748620 756770 537930 697990 TRUE FALSE FALSE 534695.4693 599154.5773 654979.1246 611276.2296 608395.0903 602797.2019 561307.3579 584469.9912 584558.2055 523208.7608 1.02195435 1.145153946 1.251850454 1.168321854 1.162815182 1.152116033 1.0728172 1.117087547 1.117256149 1 18.99702717 -8.415921823 0.52880097 0.995731347 1.154356358 0.353539095 0.056547368 1.886476827 1.021368085 0.085088056 0.029945397 3.84E-09 8.415921823 0.158625011 S(ph)LSTSGESLYHVLGLDK ddPTM_HeLa_A485_30min_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.798)LS(0.021)T(0.021)S(0.021)GES(0.14)LYHVLGLDK 109.89 0.0001198 57212000 55114 56760 49359 76195 70272 72243 84926 72462 53833 121280 TRUE FALSE FALSE 67373.91916 63397.58825 67618.9481 80357.33991 63275.47294 76025.53177 66780.86632 54690.58088 64636.78931 91047.12799 0.739989505 0.696316179 0.742680737 0.882590606 0.694974947 0.835012959 0.733475814 0.600684306 0.709926724 1 16.47432589 -4.997632389 24.70052203 0.763823667 0.718489224 0.039909951 0.105397883 288.8532619 3013323 0.02736936 0.056398312 1.01E-05 4.997632389 -0.045334443 S(ph)LSTSGESLYHVLGLDK ddPTM_HeLa_A486_30min_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.506)LS(0.369)T(0.06)S(0.056)GES(0.008)LYHVLGLDK 163.79 5.18E-12 43827000 114020 116530 94836 13447 146040 134620 129320 109300 146880 113300 TRUE FALSE FALSE 106027.7868 107295.7384 131559.039 31305.29557 127722.3014 118011.9531 96962.76819 84414.776 159611.6767 84928.94254 1.248429377 1.263358935 1.549048358 0.368605738 1.503872503 1.389537531 1.14169287 0.993945921 1.879355516 1 16.37396867 S(ph)LSVEHLETK ddPTM_HeLa_A485_30min_R1 2 SLSVEHLETK 10 0 J3KN34;P26045-2;P26045 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 0 S(0.5)LS(0.5)VEHLETK;S(0.593)LS(0.407)VEHLETK ; 133.32 8.34E-05 222230000 648050 648050 497580 852590 875610 843700 1006960 1130770 720400 1335740 TRUE FALSE FALSE 792206.4868 723833.8102 681655.548 899164.8328 788431.1939 887874.8274 791814.7699 853446.8845 864977.6721 1002764.6 0.79002239 0.721838216 0.679776238 0.896685855 0.786257506 0.885426976 0.789631754 0.85109395 0.862592947 1 19.93555154 -14 0.054569076 1.792278619 0.443092112 0.601649441 0.055454821 324.1047521 1.298098359 35.46719109 6.919003709 1.00E-14 14 -1.349186507 S(ph)LSVEHLETK ddPTM_HeLa_A486_30min_R1 2 SLSVEHLETK 10 0 J3KN34;P26045-2;P26045 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 0 S(0.5)LS(0.5)VEHLETK;S(0.601)LS(0.399)VEHLETK ; 146.36 3.67E-06 460070000 648570 674050 426580 234040 750760 749080 842600 824350 614560 823880 TRUE FALSE FALSE 603108.5922 620635.8232 591763.2002 544856.9477 656592.6802 656666.1257 631772.5679 636663.5004 667830.5556 617575.0854 0.976575329 1.004956058 0.958204458 0.882252151 1.063178706 1.063297632 1.022989079 1.030908655 1.081375482 1 19.23625503 -5.790626087 24.9999666 1.045122229 0.959223112 0.587912766 0.036078784 154.9733843 132742.1709 0.011551828 0.013100554 1.62E-06 5.790626087 -0.085899117 S(ph)LSVPNRPRPPQPPQRPPPPTGLMVK ddPTM_HeLa_A485_30min_R1 1 SLSVPNRPRPPQPPQRPPPPTGLMVK 26 3 E7ER60;A0A1W2PR85;O15056-3;O15056 E7ER60 SYNJ2 Synaptojanin-2 1 0 S(0.5)LS(0.5)VPNRPRPPQPPQRPPPPTGLMVK 53.867 0.033467 205490000 65170 67622 55762 92685 77728 79551 95162 92525 71265 105480 TRUE FALSE FALSE 79666.84167 75529.80467 76390.68425 97748.14686 69989.1274 83716.16735 74829.8613 69833.09868 85567.23182 79185.77722 1.006075137 0.953830439 0.964702083 1.234415451 0.883859828 1.05721217 0.944991183 0.881889414 1.080588394 1 16.27295371 -6.776670707 24.91769057 0.9670247 1.015322422 0.034546558 0.097563158 822.7900555 1346031.708 0.040193688 0.02721077 1.67E-07 6.776670707 0.048297722 S(ph)LT(ph)RS(ph)PPAIR ddPTM_HeLa_A485_30min_R1 3 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR ;; 86.756 0.0087673 8983150000 806679 900890 783811 1107520 1280150 967329 1378740 1405910 856690 1426710 TRUE FALSE FALSE 986121.9605 1006241.249 1073775.306 1168021.013 1152693.771 1017976.851 1084160.936 1061108.368 1028619.825 1071057.454 0.920699405 0.939483914 1.002537541 1.09053068 1.076220297 0.950440938 1.012234154 0.990710969 0.960377822 1 20.03060444 -4.748677347 4.118272974 1.013738681 0.926308473 0.374686017 0.041770455 0.221092397 8.42303598 0.012008585 0.031886547 1.78E-05 4.748677347 -0.087430208 S(ph)LT(ph)RS(ph)PPAIR ddPTM_HeLa_A486_30min_R1 7 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR;S(1)LT(1)RS(1)PPAIR ;;;;;; 100.11 0.0022706 12680570000 1997028 2001006 1384864 1011913 2276094 2178452 2607296 2560828 1757149 2731959 TRUE FALSE FALSE 1857046.65 1842438.997 1921120.429 2355784.603 1990605.067 1909696.741 1954922.964 1977783.367 1909460.09 2047858.684 0.906823632 0.899690497 0.938111816 1.150364828 0.972042203 0.932533458 0.954618099 0.965781175 0.932417898 1 20.96568473 -5.007616817 24.93022431 0.986027864 0.907168052 0.251894426 0.058809584 520.2326415 1702767.565 0.016621886 0.03242084 9.83E-06 5.007616817 -0.078859811 S(ph)LT(ph)Y(ph)LS(ph)ILR ddPTM_HeLa_A485_30min_R1 1 SLTYLSILR 9 0 P09661;H0YMA0;H0YKK0 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 4 0 S(1)LT(1)Y(1)LS(1)ILR 77.662 0.0054165 222100000 25854 32275 28114 51753 38327 32315 46234 44710 17083 42327 TRUE FALSE FALSE 31605.1331 36049.28049 38514.53852 54580.13534 34511.02931 34006.96343 36355.7282 33744.8024 20511.40141 31775.65787 0.994633478 1.1344936 1.212076826 1.717671293 1.086083865 1.070220594 1.144137703 1.061970221 0.645506743 1 14.95563437 -7.283527306 1.452059229 0.839358713 1.224254231 0.318485947 0.206708645 0.533101208 2.000274826 0.178319869 0.067470285 5.21E-08 7.283527306 0.384895518 S(ph)LT(ph)Y(ph)LS(ph)ILR ddPTM_HeLa_A486_30min_R1 1 SLTYLSILR 9 0 P09661;H0YMA0;H0YKK0 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 4 0 S(1)LT(1)Y(1)LS(1)ILR 68.557 0.0088082 260990000 23434 32040 19513 12988 32375 26701 27795 30313 24323 35714 TRUE FALSE FALSE 21791.39761 29501.03371 27068.95618 30236.72038 28314.22562 23406.9021 20840.39701 23411.39163 26431.33722 26770.98194 0.813993213 1.101978021 1.011130493 1.129458772 1.057646136 0.874338571 0.778469653 0.874506272 0.987312953 1 14.70838244 -6.264379093 24.81947657 0.887303636 1.032510402 0.259158379 0.098965874 279.5011115 2359765.152 0.034017221 0.031329198 5.44E-07 6.264379093 0.145206766 S(ph)LTAHSLLPLAEK ddPTM_HeLa_A485_30min_R1 1 SLTAHSLLPLAEK 13 0 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 0 S(0.333)LT(0.333)AHS(0.333)LLPLAEK 101.6 0.00049597 198330000 84887 86783 68135 104000 112300 103090 120650 135050 85921 157810 TRUE FALSE FALSE 103769.8203 96931.51694 93340.97183 109681.2567 101119.0177 108487.633 94872.14188 101928.7757 103164.5566 118470.8713 0.875909995 0.818188605 0.787881197 0.9258078 0.853534853 0.915732549 0.80080564 0.860369934 0.870801029 1 16.85417286 -8.360921894 2.33299635 0.999983989 0.85403711 0.510643989 0.042386 2.175121188 13.01060666 0.040927811 0.011133662 4.36E-09 8.360921894 -0.145946879 S(ph)LTAHSLLPLAEK ddPTM_HeLa_A486_30min_R1 2 SLTAHSLLPLAEK 13 0 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 0 S(0.352)LT(0.352)AHS(0.296)LLPLAEK;S(0.476)LT(0.476)AHS(0.048)LLPLAEK ; 122.45 3.33E-05 267975000 459910 544890 320020 206638 556030 591750 709020 779000 463190 575170 TRUE FALSE FALSE 427672.684 501710.9319 443940.3144 481063.7069 486287.5326 518745.9015 531615.6968 601638.7055 503339.6821 431143.6883 0.99194931 1.163674537 1.029680653 1.115785108 1.127901314 1.203185656 1.233036018 1.39544825 1.167452281 1 18.71780923 -6.098912486 1.718108188 1.230852135 1.075096127 0.23348084 0.101180839 0.438697614 2.588228038 0.038807558 0.039849906 7.96E-07 6.098912486 -0.155756007 S(ph)LTELVQQPCPPIEASK ddPTM_HeLa_A486_30min_R1 1 SLTELVQQPCPPIEASK 17 0 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 0 S(0.891)LT(0.109)ELVQQPCPPIEASK 182.15 1.35E-17 30605000 176910 204370 89453 54159 116520 188420 163350 161460 141260 265520 TRUE FALSE FALSE 164509.5226 188174.9769 124091.5972 126084.889 101904.9751 165174.6561 122478.1023 124699.0826 153504.5305 199032.0638 0.826547841 0.945450564 0.623475408 0.633490337 0.512002806 0.829889682 0.6153687 0.626527607 0.771255282 1 17.60264134 -9.314313729 10.18660416 0.99999985 0.704065582 0.327172184 0.124843021 0 0 0.127266758 0.030866723 4.85E-10 9.314313729 -0.295934268 S(ph)LTETELTKPNYLYLLPTEK ddPTM_HeLa_A486_30min_R1 1 SLTETELTKPNYLYLLPTEK 20 1 Q99650 Q99650 OSMR Oncostatin-M-specific receptor subunit beta 1 0 S(0.636)LT(0.175)ET(0.175)ELT(0.014)KPNYLYLLPTEK 67.217 0.0029112 130850000 70311 69690 46275 30913 87527 96584 97309 86023 83265 145720 TRUE FALSE FALSE 65382.56199 64167.51059 64193.91929 71967.02626 76548.5475 84668.44807 72961.25897 66437.44077 90482.47724 109230.7635 0.598572782 0.587449071 0.587690841 0.658853092 0.700796598 0.77513372 0.667955223 0.608230123 0.82836075 1 16.73701971 -14 0.122509084 2.13058425 0.504598281 0.786243629 0.058264738 72.86904262 0.574033737 20.21445743 0.566855797 1.00E-14 14 -1.625985969 S(ph)LTFTGGAK ddPTM_HeLa_A486_30min_R1 2 SLTFTGGAK 9 0 F5H8C5;F5H0S5;F5H7J1;Q8NHQ8-2;Q8NHQ8 F5H8C5 RASSF8 Ras association domain-containing protein 8 1 0 S(0.998)LT(0.002)FTGGAK;S(0.999)LT(0.001)FTGGAK ; 110.53 0.00091605 522850000 439110 464390 340640 178343 483050 509580 596720 582340 444020 574690 TRUE FALSE FALSE 408330.6566 427590.0451 472544.9307 415191.517 422461.3647 446713.2006 447414.3445 449753.8944 482508.0111 430783.8834 0.947878211 0.992585985 1.096941991 0.963804666 0.980680525 1.036977514 1.038605115 1.044036028 1.120069784 1 18.71660475 -6.622036536 2.082560683 1.057261002 1.000435027 0.228490687 0.046608022 0.512871571 4.52913814 0.022014836 0.015744243 2.39E-07 6.622036536 -0.056825975 S(ph)LTLLPHGTPNSASPCSQR ddPTM_HeLa_A486_30min_R1 1 SLTLLPHGTPNSASPCSQR 19 0 Q9BXB5 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 S(0.958)LT(0.042)LLPHGTPNSASPCSQR 82.635 0.0012922 298170000 140900 144360 168710 1935.6 235030 105380 106150 130380 150410 27707 TRUE FALSE FALSE 131023.6376 132920.3878 234039.0302 4506.17462 205550.3458 92379.28703 79590.14726 100695.3202 163447.6599 20768.98686 6.308619602 6.399945686 11.26867824 0.216966511 9.896984732 4.447943834 3.832163206 4.848350132 7.869794566 1 14.34214322 -9.263812208 0.255109945 9.53E-19 7.090101305 0.197454278 2.998696608 15.28194032 1.38002232 29.51365655 5.187399668 5.45E-10 9.263812208 7.090101305 S(ph)LTLTPTR ddPTM_HeLa_A485_30min_R1 1 SLTLTPTR 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y802 Q3V6T2 CCDC88A Girdin 1 0 S(0.999)LT(0.001)LTPTR 82.287 0.0074279 157970000 110590 126680 113370 122250 162770 126300 188980 168690 129060 194020 TRUE FALSE FALSE 135190.364 141494.124 155310.2807 128928.2079 146564.0473 132912.8727 148602.8792 127318.513 154961.1582 145654.3847 0.92815856 0.97143745 1.066293205 0.885165306 1.00624535 0.91252229 1.020243088 0.874113837 1.063896281 1 17.15218961 -7.79911854 24.9999994 1.031948154 0.961814628 0.195243737 0.059637882 309.9293223 205629.6738 0.0532207 0.01374269 1.59E-08 7.79911854 -0.070133525 S(ph)LTLTPTR ddPTM_HeLa_A486_30min_R1 3 SLTLTPTR 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4W8;A0A2R8YG73;A0A2R8Y802 Q3V6T2 CCDC88A Girdin 1 0 S(0.998)LT(0.002)LTPTR;S(1)LTLTPTR;S(0.979)LT(0.021)LTPTR ;; 117.3 0.0008972 413851000 281695 339719 251342 86315 343308 315494 355438 355481 267963 329063 TRUE FALSE FALSE 261949.6352 312798.4292 348668.3536 200945.6821 300247.1094 276571.558 266503.653 274545.7364 291190.2486 246663.483 1.061971687 1.268118108 1.413538597 0.814655172 1.217233722 1.121250518 1.08043416 1.113037622 1.180516245 1 17.91218462 -7.472106447 0.018605095 2.24E-06 2.21283694 0.075338087 0.146887322 741.0914401 14.00238313 831.9534525 828.8343601 3.37E-08 7.472106447 2.212834699 S(ph)LTNDWEDHLAVK ddPTM_HeLa_A485_30min_R1 1 SLTNDWEDHLAVK 13 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 1 0 S(0.5)LT(0.5)NDWEDHLAVK 97.904 0.00071577 60295000 77274 69460 59750 113850 96423 83777 109170 108730 83178 150290 TRUE FALSE FALSE 94463.33471 77582.74278 81854.0114 120069.3372 86822.78756 88163.43418 85844.93766 82063.79702 99871.06165 112825.4689 0.837251869 0.687635013 0.725492322 1.064204194 0.769531812 0.781414295 0.760864887 0.727351704 0.885181889 1 16.78373325 -8.017120805 6.063166092 0.999947283 0.795337564 0.30055246 0.098601549 0.186418234 33.8807379 0.098012721 0.025434565 9.61E-09 8.017120805 -0.204609719 S(ph)LTNLSFLTDSEK ddPTM_HeLa_A485_30min_R1 5 SLTNLSFLTDSEK 13 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(1)LTNLSFLTDSEK;S(0.998)LT(0.002)NLSFLTDSEK;S(0.998)LT(0.002)NLSFLTDSEK;S(1)LTNLSFLTDSEK;S(1)LTNLSFLTDSEK ;;;; 319.28 1.21E-68 1219789000 1040665 908608 740630 1280881 967611 1091842 1455408 1208525 743375 1662617 TRUE FALSE FALSE 1272157.339 1014861.802 1014619.857 1350852.286 871272.2514 1149009.159 1144448.191 912132.3489 892563.5439 1248157.18 1.019228475 0.813088141 0.8128943 1.082277382 0.698046901 0.920564475 0.916910313 0.730783241 0.715105083 1 20.25136819 -7.248727159 24.71649787 0.792208118 0.889073123 0.067827595 0.125298934 1426.498681 2773563.356 0.056939484 0.032586143 5.64E-08 7.248727159 0.096865006 S(ph)LTNLSFLTDSEK ddPTM_HeLa_A486_30min_R1 5 SLTNLSFLTDSEK 13 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(1)LTNLSFLTDSEK;S(0.988)LT(0.012)NLSFLTDSEK;S(0.989)LT(0.011)NLSFLTDSEK;S(0.999)LT(0.001)NLSFLTDSEK;S(1)LTNLSFLTDSEK ;;;; 355.95 7.16E-95 1591450000 1640905 1649017 865478 725276 1486005 1642928 1876697 1883715 1425039 2208445 TRUE FALSE FALSE 1525886.033 1518342.887 1200614.26 1688479.181 1299616.396 1440240.247 1407127.561 1454834.216 1548562.528 1655435.997 0.921742692 0.917186101 0.72525562 1.019960412 0.785059887 0.870006602 0.850004206 0.878822388 0.935440893 1 20.6587798 -7.971288963 2.291248875 0.999408384 0.86826391 0.233454098 0.074844695 0.402230881 4.817275255 0.067483358 0.018620143 1.07E-08 7.971288963 -0.131144474 S(ph)LTNLSFLTDSEKK ddPTM_HeLa_A485_30min_R1 2 SLTNLSFLTDSEKK 14 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.998)LT(0.002)NLSFLTDSEKK;S(0.983)LT(0.017)NLSFLTDSEKK ; 168.27 2.81E-12 2032470000 818400 585010 353220 909290 645240 777070 1310490 1143720 445140 1301800 TRUE FALSE FALSE 1000450.257 653421.8306 483890.7767 958962.2103 580997.64 817756.1836 1030493.106 863220.8767 534475.5149 977285.2179 1.023703458 0.668609142 0.495137722 0.981251116 0.594501615 0.836763075 1.054444585 0.883284492 0.546898188 1 19.89842014 -6.506273011 24.45189386 0.873455273 0.743293584 0.076865103 0.194950885 1434.394082 2112147.564 0.069536879 0.059752081 3.12E-07 6.506273011 -0.130161689 S(ph)LTNLSFLTDSEKK ddPTM_HeLa_A486_30min_R1 2 SLTNLSFLTDSEKK 14 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.995)LT(0.005)NLSFLTDSEKK;S(0.997)LT(0.003)NLSFLTDSEKK ; 212.79 8.83E-23 2120000000 943720 691770 297470 432260 651180 754130 1079480 986190 569370 1322790 TRUE FALSE FALSE 877570.1014 636951.6258 412658.3505 1006323.125 569502.9324 661093.108 809382.6864 761656.0654 618723.45 991554.7741 0.885044502 0.642376642 0.416173026 1.014894135 0.574353477 0.666723741 0.816276324 0.768143208 0.623993214 1 19.91933294 -11.16196921 2.261701398 1.675282943 0.709496331 0.225042651 0.16027286 14888296.51 3202138.301 51555097.16 0.03906425 6.89E-12 11.16196921 -0.965786612 S(ph)LTNLVAAGDDVLEDQEILMHHPPQVDELDR ddPTM_HeLa_A485_30min_R1 1 SLTNLVAAGDDVLEDQEILMHHPPQVDELDR 31 0 Q7Z5Y7-2;Q7Z5Y7-3;Q7Z5Y7 Q7Z5Y7-2 KCTD20 BTB/POZ domain-containing protein KCTD20 1 0 S(0.5)LT(0.5)NLVAAGDDVLEDQEILMHHPPQVDELDR 47.429 0.026318 8407300 1327.5 1788.8 1011 865.97 2897 945.85 1951.1 1734.7 1071.6 1980 TRUE FALSE FALSE 1622.797795 1997.9846 1385.010971 913.2757483 2608.564508 995.3732434 1534.231546 1309.262105 1286.660291 1486.422439 1.091747374 1.344156645 0.9317748 0.614411976 1.754928101 0.66964358 1.032163876 0.880814276 0.865608764 1 10.53762847 S(ph)LTNLVAAGDDVLEDQEILMHHPPQVDELDR ddPTM_HeLa_A486_30min_R1 2 SLTNLVAAGDDVLEDQEILMHHPPQVDELDR 31 0 Q7Z5Y7-2;Q7Z5Y7-3;Q7Z5Y7 Q7Z5Y7-2 KCTD20 BTB/POZ domain-containing protein KCTD20 1 0 S(0.5)LT(0.5)NLVAAGDDVLEDQEILMHHPPQVDELDR;S(0.506)LT(0.494)NLVAAGDDVLEDQEILMHHPPQVDELDR ; 83.185 0.00041142 29512000 2564.1 5558.7 4497.5 680.65 4465.6 5887.4 4929.5 5944.5 6042 5605.5 TRUE FALSE FALSE 2384.369831 5118.208368 6239.052447 1584.587598 3905.482808 5161.072447 3696.086961 4591.067118 6565.725425 4201.846314 0.567457649 1.218085571 1.484835946 0.377116981 0.929468266 1.22828682 0.879634019 1.092630899 1.56258105 1 12.03680768 -7.532499731 24.39202884 1.29672921 0.973739778 0.133979481 0.328067611 322.0823494 816545.8845 0.218936132 0.082996312 2.93E-08 7.532499731 -0.322989432 S(ph)LTNSHLEK ddPTM_HeLa_A485_30min_R1 6 SLTNSHLEK 9 0 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 0 S(0.971)LT(0.028)NS(0.001)HLEK;S(0.959)LT(0.034)NS(0.008)HLEK;S(0.944)LT(0.039)NS(0.018)HLEK;S(0.998)LT(0.002)NSHLEK;S(0.992)LT(0.008)NSHLEK;S(0.999)LT(0.001)NSHLEK ;;;;; 154.36 3.42E-05 4852810000 4255320 3900930 2221217 4759720 2848360 4162820 5869270 5408380 3567030 9905010 TRUE FALSE FALSE 5201901.253 4357109.83 3042937.601 5019731.451 2564767.277 4380778.818 4615252.517 4081966.325 4282900.202 7435873.295 0.699568302 0.585958052 0.409223971 0.675069525 0.344918098 0.589141133 0.620673905 0.548955874 0.575978104 1 22.82607076 -9.819541651 0.677844342 1.071086893 0.55112861 0.618016288 0.103546927 16.71294058 4.623359064 2.749779449 0.037578586 1.52E-10 9.819541651 -0.519958283 S(ph)LTNSHLEK ddPTM_HeLa_A486_30min_R1 5 SLTNSHLEK 9 0 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 0 S(0.912)LT(0.055)NS(0.034)HLEK;S(0.995)LT(0.005)NSHLEK;S(0.987)LT(0.013)NSHLEK;S(0.994)LT(0.006)NSHLEK;S(0.997)LT(0.002)NSHLEK ;;;; 153.81 3.66E-05 2707680000 2649680 2417330 1409390 838938 2553150 3160120 2795740 2758970 2805650 4820390 TRUE FALSE FALSE 2463951.115 2225771.967 1955143.553 1953090.062 2232910.12 2770256.524 2096216.282 2130812.759 3048846.001 3613332.969 0.681905359 0.615988614 0.541091444 0.540523134 0.617964118 0.766676237 0.580133716 0.589708388 0.843776654 1 21.78489877 -7.936914916 3.34463032 0.997703718 0.615419446 0.794324438 0.064378466 0.09538988 2.210620433 0.066308903 0.017674296 1.16E-08 7.936914916 -0.382284273 S(ph)LTPAVPVESKPDKPSGK ddPTM_HeLa_A485_30min_R1 2 SLTPAVPVESKPDKPSGK 18 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;P20810-4;B7Z574;E7ES10;P20810;P20810-8;H0Y944;E9PCH5;P20810-2;P20810-3;E7EQK6;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.999)LT(0.001)PAVPVESKPDKPSGK;S(1)LTPAVPVESKPDKPSGK ; 195.03 5.43E-19 2397510000 2335700 1399890 782440 3044700 2214600 2389300 3728900 3828200 1624400 4274600 TRUE FALSE FALSE 2855268.407 1563594.958 1071897.116 3211024.251 1994106.648 2514400.053 2932190.053 2889327.948 1950402.18 3209020.888 0.88976311 0.487249854 0.33402622 1.000624291 0.621406565 0.783541192 0.913733551 0.900376797 0.607787312 1 21.61370175 -5.268000092 24.98508679 0.820894462 0.56203674 0.301991587 0.181909318 633.5905086 2412895.823 0.0504036 0.076783212 5.40E-06 5.268000092 -0.258857722 S(ph)LTPAVPVESKPDKPSGK ddPTM_HeLa_A486_30min_R1 2 SLTPAVPVESKPDKPSGK 18 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;P20810-4;B7Z574;E7ES10;P20810;P20810-8;H0Y944;E9PCH5;P20810-2;P20810-3;E7EQK6;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.998)LT(0.002)PAVPVESKPDKPSGK;S(0.997)LT(0.003)PAVPVESKPDKPSGK ; 258.5 3.99E-58 2867000000 3191800 2920300 921780 1658650 2566800 4077600 4605900 4435600 2196290 5440500 TRUE FALSE FALSE 2968071.302 2688884.792 1278717.902 3861421.024 2244848.01 3574547.17 3453455.104 3425710.708 2386666.186 4078163.388 0.727796074 0.659337191 0.313552396 0.946852947 0.550455633 0.876509063 0.846816269 0.840013109 0.585230644 1 21.95948815 -5.280681028 24.99209076 0.793809451 0.576139355 0.299146592 0.167128813 1046.786589 1359620.361 0.045799777 0.068045044 5.24E-06 5.280681028 -0.217670096 S(ph)LTRS(ph)PPAIR ddPTM_HeLa_A485_30min_R1 2 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.831)LT(0.18)RS(0.989)PPAIR;S(0.943)LT(0.058)RS(0.999)PPAIR ; 94.673 0.0027835 457690000 196448 323340 311720 239920 419870 308060 366200 443600 332640 364280 TRUE FALSE FALSE 240147.1799 361151.8003 427038.1998 253026.2221 378066.2685 324189.5452 287958.3784 334806.4045 399397.7968 273471.7001 0.87814271 1.320618551 1.561544392 0.925237317 1.382469442 1.185459209 1.052973227 1.224281724 1.460472132 1 18.06103202 S(ph)LTRS(ph)PPAIR ddPTM_HeLa_A486_30min_R1 2 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.995)LT(0.183)RS(0.822)PPAIR;S(0.983)LT(0.026)RS(0.991)PPAIR ; 131.08 8.32E-05 478750000 473400 378640 324700 158943 572330 375760 436880 489860 311540 456590 TRUE FALSE FALSE 440217.1046 348635.1874 450432.5358 370027.3365 500543.0346 329402.5516 327568.0032 378329.5716 338544.538 342256.8921 1.286218378 1.018635988 1.31606564 1.081139183 1.46247759 0.96244242 0.95708227 1.105396503 0.989153311 1 18.38472007 -6.326882573 24.99999875 1.006543702 1.217194392 0.471069923 0.121304927 188.3274057 71942.36931 0.04060936 0.035814094 4.71E-07 6.326882573 0.21065069 S(ph)LTS(ph)SLENIFSR ddPTM_HeLa_A486_30min_R1 1 SLTSSLENIFSR 12 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 0 S(0.998)LT(0.024)S(0.63)S(0.347)LENIFSR 102.52 0.0016756 8405700 37501 37081 25425 12873 40670 33150 40266 33079 28327 47398 TRUE FALSE FALSE 34872.37356 34142.56651 35270.24091 29968.99457 35568.78937 29060.29004 30191.02091 25547.63381 30782.40717 35529.23229 0.981512161 0.96097113 0.992710471 0.843502452 1.001113367 0.817926202 0.84975157 0.719059551 0.866396631 1 15.1167189 -6.271689807 24.89228377 0.833013305 0.952034044 0.305764091 0.076995808 719.9442303 1748318.168 0.025864536 0.023062764 5.35E-07 6.271689807 0.119020739 S(ph)LTSSLENIFSR ddPTM_HeLa_A485_30min_R1 4 SLTSSLENIFSR 12 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 S(0.979)LT(0.02)S(0.001)SLENIFSR;S(0.981)LT(0.019)SSLENIFSR;S(0.998)LT(0.002)SSLENIFSR;S(0.998)LT(0.002)SSLENIFSR ;;; 122.78 5.26E-05 133733000 62877 73825 72384 68307 97223 77639 101490 114562 73286 84546 TRUE FALSE FALSE 76863.77173 82458.19156 99161.85375 72038.43845 87543.13675 81704.05799 79805.8324 86465.48987 87993.82798 63470.23815 1.211020692 1.299163103 1.562336248 1.134995559 1.37927853 1.287281415 1.257374082 1.362299755 1.386379357 1 15.95379264 -10.04430689 4.446133705 0.999983784 1.321268086 0.434413817 0.109535499 15625253.68 17649586.7 2192.626537 0.025590865 9.03E-11 10.04430689 0.321284302 S(ph)LTSSLENIFSR ddPTM_HeLa_A486_30min_R1 1 SLTSSLENIFSR 12 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 S(0.895)LT(0.101)S(0.004)SLENIFSR 100.22 0.0010573 34926000 35933 40160 33176 15401 43107 39107 41128 40567 30489 44707 TRUE FALSE FALSE 33414.28226 36977.57534 46022.63568 35854.30632 37700.1181 34282.37595 30837.33939 31330.77967 33131.81107 33512.07621 0.99708183 1.103410458 1.373314963 1.069892122 1.124971126 1.022985736 0.920185882 0.934910134 0.988652892 1 15.03239345 -6.337946531 2.1653961 0.955203922 1.147422354 0.433765766 0.093128147 0.30377461 2.797128903 0.039329663 0.034386867 4.59E-07 6.337946531 0.192218431 S(ph)LVGGLLQSK ddPTM_HeLa_A485_30min_R1 2 SLVGGLLQSK 10 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 S(1)LVGGLLQSK;S(1)LVGGLLQSK ; 140.16 1.50E-05 279850000 469060 374450 305650 496570 536570 435890 632090 607170 383840 688000 TRUE FALSE FALSE 573400.7788 418238.6702 418722.6542 523696.3617 483147.2068 458712.5264 497038.8078 458260.6055 460873.1672 516494.2617 1.110178411 0.809764408 0.810701464 1.013944201 0.935435769 0.888127053 0.962331713 0.887252075 0.892310334 1 18.9783928 -5.271341032 24.98620961 0.933806245 0.900169721 0.016275575 0.088248057 3074.716559 7758857.285 0.024590473 0.036994066 5.35E-06 5.271341032 -0.033636524 S(ph)LVGGLLQSK ddPTM_HeLa_A486_30min_R1 1 SLVGGLLQSK 10 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 S(1)LVGGLLQSK 153.49 2.71E-06 135070000 304530 338160 178640 147020 305780 343090 428590 368050 274670 447890 TRUE FALSE FALSE 283184.0196 311362.97 247814.1921 342269.99 267426.2211 300763.0441 321352.2488 284253.0495 298478.6168 335735.4287 0.843473746 0.927405759 0.738123448 1.019463425 0.796538578 0.8958335 0.957159184 0.846657889 0.889029251 1 18.35696526 -14 0.206454143 1.558771107 0.862446517 0.195025128 0.075403211 238.0793555 2.368056358 55.05603065 0.158584069 1.00E-14 14 -0.69632459 S(ph)LVGTPYWMAPELISR ddPTM_HeLa_A485_30min_R1 7 SLVGTPYWMAPELISR 16 0 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 S(0.991)LVGT(0.009)PYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR ;;;;;; 370.91 9.07E-119 3588687000 665797 681834 766459 765534 968792 736267 893131 873602 727247 988657 TRUE FALSE FALSE 813901.2457 761568.5551 1050004.079 807353.184 872335.6668 774816.8016 702306.2656 659349.7397 873198.8022 742203.0048 1.096601928 1.026091986 1.414712784 1.08777946 1.175332977 1.043941882 0.946245517 0.888368459 1.176495914 1 19.50145432 -6.384979336 3.602402212 0.993385864 1.163080027 0.286945668 0.118122712 0.313727415 7.381619022 0.044123323 0.03824075 4.12E-07 6.384979336 0.169694163 S(ph)LVGTPYWMAPELISR ddPTM_HeLa_A486_30min_R1 9 SLVGTPYWMAPELISR 16 0 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(0.998)LVGT(0.002)PYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR;S(1)LVGTPYWMAPELISR ;;;;;;;; 336.23 8.07E-91 3990601000 1398447 1627679 1342591 620740 1791065 1568225 1726180 1725806 1495900 1683463 TRUE FALSE FALSE 1300423.087 1498695.788 1862478.191 1445114.09 1566412.927 1374753.344 1294271.506 1332877.648 1625565.816 1261912.907 1.030517304 1.187638053 1.475916587 1.145177359 1.241300345 1.089420146 1.025642498 1.056235847 1.288175917 1 20.26718091 -6.26549125 23.20181082 1.091268831 1.225021167 0.191223831 0.127066028 219.7506137 1258325.556 0.044859824 0.041064542 5.43E-07 6.26549125 0.133752336 S(ph)LVSVTK ddPTM_HeLa_A486_30min_R1 1 SLVSVTK 7 0 P08238;Q58FF7;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 1 0 S(0.985)LVS(0.006)VT(0.009)K 65.404 0.027078 91003000 211000 235330 140480 138220 217080 248660 289950 279820 204480 327940 TRUE FALSE FALSE 196209.9896 216681.5937 194877.6182 321783.1453 189851.8022 217982.8574 217401.4432 216111.0944 222204.491 245821.6895 0.798180136 0.881458403 0.792760064 1.309010389 0.772315098 0.886751929 0.884386743 0.879137618 0.90392549 1 17.90725269 -9.50227087 0.009757995 1.886376542 3.79E-06 0.033729948 0.144305378 25889.08211 59.29412069 5999.965209 5466.181596 3.15E-10 9.50227087 -1.886372748 S(ph)LY(ph)LSAK ddPTM_HeLa_A485_30min_R1 1 SLYLSAK 7 0 H0Y767;Q86WG5-3;Q86WG5 H0Y767 SBF2 Myotubularin-related protein 13 2 0 S(0.999)LY(1)LS(0.001)AK 96.492 0.0096357 1014500000 1238900 1140600 921320 1457300 1334800 1448900 1855400 1943500 1073400 2050300 TRUE FALSE FALSE 1514489.031 1273983.248 1262154.607 1536908.609 1201902.625 1524762.164 1458978.633 1466853.578 1288821.534 1539197.943 0.983946891 0.827692925 0.820007987 0.998512645 0.780862936 0.990621233 0.947882395 0.95299866 0.837333197 1 20.55374735 -6.309662344 24.99988844 0.942961697 0.882182034 0.148267944 0.076023873 825.2682499 427835.3666 0.02586832 0.022813738 4.90E-07 6.309662344 -0.060779664 S(ph)LY(ph)LSAK ddPTM_HeLa_A486_30min_R1 1 SLYLSAK 7 0 H0Y767;Q86WG5-3;Q86WG5 H0Y767 SBF2 Myotubularin-related protein 13 2 0 S(0.971)LY(0.992)LS(0.037)AK 71.877 0.035245 727090000 813970 768680 436410 296180 702190 781760 874750 841190 616860 1077100 TRUE FALSE FALSE 756914.9063 707766.9973 605399.6395 689522.0081 614114.7825 685314.3996 655878.2978 649669.4 670329.9215 807387.1493 0.937486938 0.876614147 0.749825706 0.854016575 0.760619962 0.848805186 0.812346714 0.804656602 0.830245963 1 19.6229011 -8.08866994 19.68238718 1 0.827195209 0.488841457 0.051903414 6786.248162 1506369.379 0.050360834 0.013003111 8.15E-09 8.08866994 -0.172804791 S(ph)LYASSPGGVYATR ddPTM_HeLa_A485_30min_R1 4 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(1)LYASSPGGVYATR;S(0.988)LYAS(0.012)SPGGVYATR;S(1)LYASSPGGVYATR;S(1)LYASSPGGVYATR ;;; 153.14 4.02E-08 3705160000 637996 598050 585442 980830 816110 741390 927930 1095740 577647 1452330 TRUE FALSE FALSE 779916.0091 667986.7452 802021.3581 1034410.259 734855.2229 780208.034 729670.175 827008.0469 693575.4544 1090290.859 0.715328394 0.61266839 0.73560312 0.948747071 0.673999251 0.715596235 0.669243596 0.758520573 0.636138007 1 20.05628163 -10.13422306 4.757360377 1.000021227 0.720938593 0.479568186 0.087962164 2.04E-05 3.71E-06 0.087750886 0.021281099 7.34E-11 10.13422306 -0.279082634 S(ph)LYASSPGGVYATR ddPTM_HeLa_A486_30min_R1 3 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.802)LYAS(0.175)S(0.023)PGGVYATR;S(0.476)LYAS(0.473)S(0.051)PGGVYATR;S(1)LYASSPGGVYATR ;; 181.75 2.38E-17 2944910000 401570 430120 374450 555315 527590 439490 585660 612520 400630 710810 TRUE FALSE FALSE 373422.0167 396035.7247 519447.0681 1292801.384 461414.7426 385270.1922 439121.6735 473062.5672 435356.931 532818.5494 0.700842749 0.743284417 0.97490425 2.426344551 0.865988512 0.723079541 0.824148622 0.887849283 0.81708291 1 19.02328478 -5.956780358 24.99996707 0.836522959 1.221664784 0.129956011 0.453321857 301.5616891 174433.9987 0.150449852 0.170594005 1.10E-06 5.956780358 0.385141825 S(ph)LYESFVSSSDR ddPTM_HeLa_A485_30min_R1 1 SLYESFVSSSDR 12 0 P18615;P18615-3;A0A0A0MT02;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 S(1)LYESFVSSSDR 115.57 0.00042007 0 17725 16993 14186 17563 20719 18416 22490 21222 11396 21344 TRUE FALSE FALSE 21667.8651 18980.18353 19433.99173 18522.42222 18656.14361 19380.23328 17684.82777 16017.27123 13683.07267 16023.33361 1.352269486 1.184534005 1.212855714 1.155965586 1.164311002 1.209500704 1.103692166 0.999621653 0.853946688 1 13.96788671 -7.161182035 1.846222745 0.926393755 1.208741773 0.782925903 0.062127225 0.164083779 1.055208721 0.042497784 0.018597431 6.90E-08 7.161182035 0.282348019 S(ph)LYESFVSSSDR ddPTM_HeLa_A486_30min_R1 1 SLYESFVSSSDR 12 0 P18615;P18615-3;A0A0A0MT02;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 S(1)LYESFVSSSDR 154.28 7.50E-08 195220000 42017 51842 33878 22909 54945 51023 45984 56651 35388 66497 TRUE FALSE FALSE 39071.82528 47733.85111 46996.46888 53333.30976 48053.28576 44728.30102 34478.31683 43752.80398 38455.46033 49845.71838 0.783855195 0.957631922 0.942838631 1.069967722 0.964040389 0.897334866 0.691700671 0.877764538 0.77148974 1 15.60518197 -6.529618525 24.9897061 0.820690339 0.949340766 0.206160885 0.098352371 227.8360218 844758.5942 0.036641968 0.028450856 2.95E-07 6.529618525 0.128650427 S(ph)MAAAAASLGGPR ddPTM_HeLa_A485_30min_R1 1 SMAAAAASLGGPR 13 0 B1ALM5;Q9P0T7 B1ALM5 TMEM9 Transmembrane protein 9 1 0 S(1)MAAAAASLGGPR 86.738 0.0018902 248830000 110160 129860 121380 118760 166120 118260 154370 162110 112220 158490 TRUE FALSE FALSE 134664.712 145045.9974 166283.513 125247.5581 149580.5095 124451.9107 121387.5884 122352.2683 134741.5247 118981.3598 1.131813523 1.219064882 1.39755936 1.052665378 1.257175996 1.045978218 1.020223576 1.0283314 1.132459109 1 16.86037605 -6.271103361 24.10339165 1.045595724 1.213562613 0.466762944 0.088839299 387.7945416 967213.1318 0.030889548 0.02760116 5.36E-07 6.271103361 0.167966889 S(ph)MDAPSRR ddPTM_HeLa_A485_30min_R1 1 SMDAPSRR 8 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 S(1)MDAPSRR 58.511 0.02191 246850000 141510 201040 176330 146880 247910 182980 231590 261030 167500 191100 TRUE FALSE FALSE 172988.4113 224549.8792 241561.8047 154903.6825 223227.2099 192560.5499 182108.9046 197011.9832 201115.7136 143462.2869 1.205811053 1.565218874 1.683800042 1.079751939 1.555999243 1.342238117 1.269385206 1.373266713 1.401871655 1 17.13031201 -12.55093598 0.236155485 2.16E-09 1.439298122 0.315093637 0.170861196 93.07695701 1.724724814 45.42050516 0.284815204 2.81E-13 12.55093598 1.439298119 S(ph)MDAPSRR ddPTM_HeLa_A486_30min_R1 2 SMDAPSRR 8 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 S(1)MDAPSRR;S(1)MDAPSRR ; 71.221 0.0093158 197800000 281640 301500 244310 111161 349570 272150 354330 343150 245980 339430 TRUE FALSE FALSE 261898.4904 277608.042 338913.3748 258788.4258 305723.671 238574.9 265672.8863 265022.2359 267301.7445 254434.5187 1.029335531 1.091078535 1.332025924 1.017112093 1.201580951 0.937667189 1.04416998 1.041612739 1.050571856 1 17.95693489 -6.256569043 24.99989151 1.019240501 1.13631198 0.30919401 0.089101452 545.5933607 2800585.8 0.029624409 0.028761286 5.54E-07 6.256569043 0.117071479 S(ph)MDEFTASTPADLGEAGR ddPTM_HeLa_A486_30min_R1 2 SMDEFTASTPADLGEAGR 18 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 S(1)MDEFTASTPADLGEAGR;S(0.999)MDEFT(0.001)ASTPADLGEAGR ; 260.56 7.46E-58 186563000 79333 77299 58143 34234 88253 66556 77819 77760 65740 83381 TRUE FALSE FALSE 73772.16638 71173.54572 80657.52672 79698.48209 77183.48581 58344.99741 58347.86311 60055.74549 71438.39613 62501.85488 1.180319632 1.138742936 1.290482129 1.27513787 1.234899124 0.933492254 0.933538104 0.960863411 1.142980417 1 15.93161139 -6.254677623 24.7605369 0.987939003 1.225728235 0.736280204 0.068692923 253.7669195 929256.754 0.024298341 0.023769508 5.56E-07 6.254677623 0.237789232 S(ph)MDELNHDFQALALEGR ddPTM_HeLa_A485_30min_R1 9 SMDELNHDFQALALEGR 17 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR ;;;;;;;; 248.79 5.22E-43 626972000 224519.4 279753 239246 238533 356429 259966 327182 352620 253089 312974 TRUE FALSE FALSE 274462.9659 312467.6798 327753.0513 251563.4538 320941.6773 273577.4178 257276.8929 266139.3921 303881.6408 234955.3417 1.168149505 1.32990243 1.394958927 1.07068625 1.365968848 1.164380498 1.095003378 1.132723309 1.293359149 1 17.84202704 -6.492459647 20.14523563 1.139668889 1.265745019 0.253966314 0.111176155 94.3249398 62467.20507 0.038233267 0.033616082 3.22E-07 6.492459647 0.12607613 S(ph)MDELNHDFQALALEGR ddPTM_HeLa_A486_30min_R1 9 SMDELNHDFQALALEGR 17 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR ;;;;;;;; 250.62 2.61E-43 778896900 290472.5 287317.7 220232.3 110821.2 329603.5 293820.7 319924.3 316652.2 246324.9 326686.3 TRUE FALSE FALSE 270111.8778 264549.5991 305512.1446 257997.3542 288261.5556 257572.0894 239875.8563 244557.4065 267676.5407 244881.9241 1.103029057 1.080314931 1.247589612 1.05355818 1.177145094 1.051821568 0.979557218 0.9986748 1.093084112 1 17.90172676 -6.448178727 5.357397954 1.017265118 1.130934772 0.475426641 0.057395091 0.194159043 10.02796927 0.020166737 0.01748805 3.56E-07 6.448178727 0.113669654 S(ph)MDIDDFIR ddPTM_HeLa_A486_30min_R1 1 SMDIDDFIR 9 0 A0A494C0G7;Q9UNQ2 A0A494C0G7 DIMT1 Probable dimethyladenosine transferase 1 0 S(1)MDIDDFIR 67.726 0.01647 3711400 9704.9 10044 7245.6 5319.2 10149 9220.6 9990.3 9783.1 5894.5 8812.7 TRUE FALSE FALSE 9024.636626 9248.07686 10051.29036 12383.36642 8876.017784 8083.05612 7490.621273 7555.701694 6405.440006 6605.942559 1.366139131 1.399963257 1.521552795 1.87457979 1.343641381 1.223603755 1.133921648 1.143773447 0.969648154 1 12.68954871 -6.311012913 2.107690463 1.077429303 1.530390191 0.686537419 0.143004865 0.207301172 1.808765205 0.061952084 0.05508839 4.89E-07 6.311012913 0.452960887 S(ph)MDLGIADETK ddPTM_HeLa_A486_30min_R1 1 SMDLGIADETK 11 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-8 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(1)MDLGIADETK 171.29 3.06E-08 84299000 151620 168700 75520 67606 136250 173470 198660 171420 129310 205420 TRUE FALSE FALSE 140992.221 155331.5976 104763.3665 157390.1846 119160.2545 152069.0351 148953.1668 132391.4081 140518.6949 153981.4949 0.915643929 1.008767954 0.680363355 1.022137009 0.773860876 0.987579937 0.967344595 0.859787782 0.912568715 1 17.23239746 S(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_HeLa_A485_30min_R1 2 SMDSSDLSDGAVTLQEYLELKK 22 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 S(0.998)MDS(0.002)SDLSDGAVTLQEYLELKK;S(0.998)MDS(0.001)S(0.001)DLSDGAVTLQEYLELKK ; 264.44 1.02E-59 589530000 242079 197625 119564 354180 238889 270206 399210 362560 218450 451320 TRUE FALSE FALSE 295928.6384 220735.5246 163795.6991 373527.9566 215104.3724 284353.5683 313915.5223 273641.5915 262290.9113 338814.2299 0.873424468 0.651494256 0.483438075 1.102456519 0.63487408 0.839260997 0.926512214 0.80764492 0.774143729 1 18.37013494 -14 0.064832834 1.773699692 0.48468633 0.153392537 0.160376283 646.2374154 3.033613711 76.68661985 11.07918827 1.00E-14 14 -1.289013362 S(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_HeLa_A486_30min_R1 2 SMDSSDLSDGAVTLQEYLELKK 22 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 S(0.996)MDS(0.002)S(0.002)DLSDGAVTLQEYLELKK;S(1)MDSSDLSDGAVTLQEYLELKK ; 190.19 1.00E-19 384380000 218440 212840 103220 115320 194345 252110 318100 274160 187550 352350 TRUE FALSE FALSE 203128.484 195973.7833 143189.5483 268470.788 169968.4379 221007.2315 238508.0155 211739.7529 203806.985 264119.2666 0.769078631 0.74198973 0.542139732 1.016475592 0.643529115 0.836770578 0.903031492 0.801682345 0.77164755 1 18.01083002 -13.99999997 0.084530689 1.707021959 0.583240043 0.260736544 0.120022927 319.5720049 1.893322531 41.53691043 3.3980703 1.00E-14 13.99999997 -1.123781916 S(ph)MGETESGDAFLDLK ddPTM_HeLa_A486_30min_R1 1 SMGETESGDAFLDLK 15 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5;B1AKL6 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(1)MGETESGDAFLDLK 143.38 9.20E-08 29426000 34509 32776 16604 18799 33173 40428 40569 40608 25274 44615 TRUE FALSE FALSE 32090.0973 30178.71039 23033.51347 43765.02205 29012.13301 35440.4044 30418.2071 31362.44487 27464.77067 33443.11361 0.959542753 0.902389375 0.688737112 1.308640773 0.867506936 1.059722035 0.909550691 0.937784838 0.821238447 1 15.02942155 -2.46749148 7.835253865 0.945546469 0.896292354 0 0.154514332 0 0 0.033998499 0 0.00340807 2.46749148 -0.049254114 S(ph)MGFLSIK ddPTM_HeLa_A485_30min_R1 1 SMGFLSIK 8 0 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 S(1)MGFLSIK 128.35 0.00057455 64146000 194180 172460 162620 177000 210470 189280 233610 213720 166800 229660 TRUE FALSE FALSE 237374.6711 192627.6968 222779.9052 186669.0618 189514.8678 199190.4081 183697.3151 161304.8349 200275.23 172409.9886 1.376803473 1.117265295 1.292151963 1.08270445 1.099210489 1.155329861 1.065467938 0.935588687 1.161621967 1 17.39548383 -1 0.281272355 1.019591766 3.378995767 0.558789734 0.081632151 38.59138818 0.544627528 0.086579571 44.82365448 0.1 1 2.359404001 S(ph)MGFLSIK ddPTM_HeLa_A486_30min_R1 2 SMGFLSIK 8 0 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 S(1)MGFLSIK;S(1)MGFLSIK ; 128.03 0.0005785 136106000 158548 209419 153725 86676 204520 226920 245260 229200 186067 236740 TRUE FALSE FALSE 147434.6039 192823.8757 213251.4369 201786.1084 178867.1945 198924.9176 183893.3539 177016.1634 202195.4374 177458.7631 0.830810501 1.08658413 1.201695725 1.137087315 1.007936669 1.120964184 1.03625964 0.997505901 1.139393929 1 17.43712429 -9.320215883 14.21784185 0.999984599 1.066551375 0.032822151 0.098286178 0 0 0.095426216 0.023144257 4.78E-10 9.320215883 0.066566776 S(ph)MGYDDLDYGMMSDYGTAR ddPTM_HeLa_A485_30min_R1 8 SMGYDDLDYGMMSDYGTAR 19 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 S(0.998)MGY(0.002)DDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(0.998)MGY(0.002)DDLDYGMMSDYGTAR;S(0.698)MGY(0.302)DDLDYGMMSDYGTAR;S(0.575)MGY(0.425)DDLDYGMMSDYGTAR ;;;;;;; 345.74 1.75E-115 3775172000 1086900 1078618 926135 907622 1340510 1130713 1206682 1298551 944505 1376917 TRUE FALSE FALSE 1328677.155 1204752.992 1268750.876 957203.0916 1207044.118 1189915.384 948864.533 980079.3312 1134058.49 1033676.932 1.285389191 1.165502446 1.227415295 0.926017658 1.167718926 1.151148243 0.917950767 0.948148595 1.097111152 1 19.97935392 -1.000006172 0.312401992 0.991522944 3.767383112 0.466584537 0.091595961 49.91929364 0.713324448 0.090615869 78.52139312 0.099998579 1.000006172 2.775860168 S(ph)MGYDDLDYGMMSDYGTAR ddPTM_HeLa_A486_30min_R1 8 SMGYDDLDYGMMSDYGTAR 19 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(1)MGYDDLDYGMMSDYGTAR;S(0.999)MGY(0.001)DDLDYGMMSDYGTAR;S(0.999)MGY(0.001)DDLDYGMMSDYGTAR;S(0.944)MGY(0.056)DDLDYGMMSDYGTAR;S(0.993)MGY(0.007)DDLDYGMMSDYGTAR ;;;;;;; 339.11 2.99E-102 3337480000 838254 1034544 886890.3 353594 1214537 896408 1066401 937481 866183 1003603.9 TRUE FALSE FALSE 779496.7233 952562.9657 1230317.976 823184.7017 1062198.444 785818.295 799576.1906 724037.0414 941264.4399 752294.9511 1.036158387 1.266209436 1.63541969 1.094231326 1.411944136 1.044561437 1.062849338 0.962437725 1.251190691 1 19.52093888 -6.277399714 24.46630912 1.061775266 1.295986075 0.304301121 0.169594612 773.0293206 1185007.151 0.059117514 0.05231171 5.28E-07 6.277399714 0.234210809 S(ph)MLAPR ddPTM_HeLa_A486_30min_R1 1 SMLAPR 6 0 E7EMV2;E7ESP9;P07197 E7EMV2 NEFM Neurofilament medium polypeptide 1 0 S(1)MLAPR 91.906 0.012919 0 229710 243380 193690 91936 248570 239440 278290 284250 207800 249520 TRUE FALSE FALSE 213608.5152 224093.6824 268691.9552 214031.6542 217392.0328 209900.3272 208658.8985 219532.4801 225812.2713 187038.5679 1.142055981 1.198114832 1.436559092 1.14431829 1.162284524 1.122230188 1.115592901 1.173728406 1.207303252 1 17.51297626 -5.46899498 24.99989601 1.139161955 1.259098554 0.306728216 0.086885663 407.7154476 189163.0726 0.024318785 0.036070294 3.40E-06 5.46899498 0.119936599 S(ph)MPAETIK ddPTM_HeLa_A485_30min_R1 4 SMPAETIK 8 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(1)MPAETIK;S(1)MPAETIK;S(1)MPAETIK;S(1)MPAETIK ;;; 150.18 0.0002364 1077620000 1779440 1700710 1265860 1877340 2100690 2008090 2892650 2905040 1614270 2648890 TRUE FALSE FALSE 2175270.289 1899593.24 1734154.291 1979894.331 1891537.928 2113230.487 2274611.697 2192574.385 1938239.182 1988570.472 1.093886447 0.955255681 0.872060767 0.995636996 0.951204875 1.062688256 1.143842639 1.102588224 0.974689713 1 20.92330026 -6.271631348 19.77210879 1.068616249 0.968171539 0.260613389 0.068285568 51.02975285 98993.60716 0.024339628 0.021836103 5.35E-07 6.271631348 -0.10044471 S(ph)MPAETIK ddPTM_HeLa_A486_30min_R1 4 SMPAETIK 8 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(1)MPAETIK;S(1)MPAETIK;S(1)MPAETIK;S(1)MPAETIK ;;; 159.34 5.49E-05 1411960000 2143580 2362520 1522080 980370 2448610 2610860 3166630 2963200 1911180 2890980 TRUE FALSE FALSE 1993326.111 2175305.311 2111470.139 2282350.905 2141482.501 2288758.638 2374305.681 2288544.046 2076842.621 2167059.791 0.919829771 1.003804934 0.974347892 1.053201631 0.988197239 1.056158509 1.095634597 1.056059485 0.95836886 1 21.04730753 -2.762106868 0.666431991 1.035302847 0.182106172 0.379502309 0.040266018 20.42773162 1.417855335 0.016945264 20.57039983 0.001729391 2.762106868 -0.853196675 S(ph)MPVLGSVSSVTK ddPTM_HeLa_A485_30min_R1 4 SMPVLGSVSSVTK 13 0 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 S(1)MPVLGSVSSVTK;S(1)MPVLGSVSSVTK;S(1)MPVLGSVSSVTK;S(1)MPVLGSVSSVTK ;;; 174.95 1.90E-12 978240000 584459 563936 500135 633201 829500 639210 914070 1010820 609810 806470 TRUE FALSE FALSE 714469.8882 629883.4096 685155.7489 667791.1673 746912.0674 672678.0472 718771.4772 762914.8101 732193.2735 605431.871 1.180099566 1.040386937 1.131681006 1.102999692 1.233684752 1.111071418 1.187204559 1.260116698 1.209373521 1 19.2076051 -5.730382617 24.9945793 1.178137296 1.109826346 0.09398065 0.075749047 371.2252848 298761.3868 0.021407401 0.027633932 1.86E-06 5.730382617 -0.068310949 S(ph)MPVLGSVSSVTK ddPTM_HeLa_A486_30min_R1 3 SMPVLGSVSSVTK 13 0 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 S(0.967)MPVLGS(0.033)VSSVTK;S(1)MPVLGSVSSVTK;S(1)MPVLGSVSSVTK ;; 220.48 2.38E-27 883404000 644241 693550 458965 282925 724370 688310 847000 806180 518669 782740 TRUE FALSE FALSE 599083.0328 638590.5721 636688.5395 658663.6982 633512.7601 603393.3104 635071.6413 622630.4128 563627.6465 586736.8092 1.021042183 1.088376529 1.085134816 1.122587995 1.079722203 1.028388369 1.082379069 1.061174965 0.960614091 1 19.16235398 -7.693987063 5.823873302 0.980734771 1.0737536 0.607650578 0.029206837 0.123788235 7.51667082 0.021650833 0.007681669 2.02E-08 7.693987063 0.09301883 S(ph)MS(ph)IDDTPR ddPTM_HeLa_A485_30min_R1 1 SMSIDDTPR 9 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0C4DGY6;A0A1B0GVW2 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 2 0 S(1)MS(1)IDDTPR 134.75 0.00040573 279090000 63589 76272 57932 61279 101500 67043 96270 98788 62028 136180 TRUE FALSE FALSE 77734.15367 85191.34692 79363.45755 64626.5166 91394.30361 70553.26781 75701.12805 74560.08811 74476.45065 102232.8322 0.760363887 0.833307119 0.776301075 0.63215031 0.89398192 0.690123381 0.740477657 0.729316468 0.72849836 1 16.64149907 -9.651909603 7.206333058 1.000000081 0.754387657 0.538190099 0.068406818 9.91E-11 0 0.064201516 0.015571155 2.23E-10 9.651909603 -0.245612424 S(ph)MS(ph)IDDTPR ddPTM_HeLa_A486_30min_R1 2 SMSIDDTPR 9 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0C4DGY6;A0A1B0GVW2 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 2 0 S(1)MS(1)IDDTPR;S(1)MS(1)IDDTPR ; 164.9 1.90E-07 0 829490 787260 577160 355710 885230 798760 969190 886900 675310 1007710 TRUE FALSE FALSE 771347.0345 724874.6504 800651.8089 828110.8566 774196.199 700217.1124 726688.411 684972.2309 733846.4145 755372.8569 1.021147407 0.959624964 1.059942519 1.096294167 1.024919272 0.926982094 0.96202611 0.906800164 0.971502229 1 19.52682942 -6.2095381 6.862245338 0.948226515 1.033823818 0.49284378 0.039864604 0.211755238 23.37076769 0.013922768 0.01385392 6.17E-07 6.2095381 0.085597303 S(ph)MSAPSDLEMIGNEDLEFTR ddPTM_HeLa_A486_30min_R1 1 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 0 S(0.5)MS(0.5)APSDLEMIGNEDLEFTR 99.569 0.00023262 38305000 10360 7835.6 7344.6 5450.2 13517 9302.1 8890 11535 8511.6 9612.8 TRUE FALSE FALSE 9633.817499 7214.678519 10188.62582 12688.34104 11821.57182 8154.501479 6665.627971 8908.732307 9249.392341 7205.692311 1.336973199 1.001247098 1.413969037 1.760877441 1.640587928 1.131674949 0.925050319 1.236346478 1.283622994 1 12.81492133 -6.358515489 9.115416413 1.116988914 1.424055122 0.361286257 0.209625056 0.509227534 44.30545019 0.083711119 0.073765815 4.38E-07 6.358515489 0.307066208 S(ph)MSDVSAEDVQNLR ddPTM_HeLa_A485_30min_R1 4 SMSDVSAEDVQNLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.993)MS(0.007)DVSAEDVQNLR;S(0.953)MS(0.047)DVSAEDVQNLR;S(1)MSDVSAEDVQNLR;S(0.989)MS(0.011)DVSAEDVQNLR ;;; 321.09 4.05E-69 1028671000 401521 510867 418011 354645 493166 422490 542020 531893 392741 471173 TRUE FALSE FALSE 490837.9612 570608.4517 572650.6638 374018.3583 444064.6614 444610.9231 426212.9991 401445.4078 471560.5163 353718.2424 1.387652381 1.613172246 1.618945802 1.057390639 1.255419168 1.256963509 1.204950574 1.134929895 1.333152944 1 18.4322411 -5.255354872 24.99647829 1.190861804 1.547248371 0.693410224 0.110141232 267.3342747 1098264.223 0.028904976 0.048464726 5.55E-06 5.255354872 0.356386567 S(ph)MSDVSAEDVQNLR ddPTM_HeLa_A486_30min_R1 4 SMSDVSAEDVQNLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(1)MSDVSAEDVQNLR;S(1)MSDVSAEDVQNLR;S(0.994)MS(0.006)DVSAEDVQNLR;S(1)MSDVSAEDVQNLR ;;; 362.4 4.59E-96 827343000 693195 652003 542833 203018 706070 580508 661339 682136 551789 702968 TRUE FALSE FALSE 644605.6102 600335.9077 753032.4752 472636.164 617508.1168 508890.8251 495864.9873 526828.5237 599618.5148 526940.2372 1.223299275 1.139286517 1.429066186 0.896944531 1.17187505 0.965746757 0.941026994 0.999787996 1.137925086 1 19.00727982 -5.27010927 24.97577981 1.017431503 1.251424249 0.545540226 0.103409536 472.2260105 1360363.854 0.028341213 0.042788278 5.37E-06 5.27010927 0.233992746 S(ph)MSENAVR ddPTM_HeLa_A485_30min_R1 3 SMSENAVR 8 0 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;H7C433;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 S(0.871)MS(0.129)ENAVR;S(0.8)MS(0.2)ENAVR;S(0.911)MS(0.089)ENAVR ;; 112.71 0.0083975 21319140000 1795400 2684090 2088170 1663240 2485450 2605060 2779460 3393980 2283890 3196410 TRUE FALSE FALSE 2194780.536 2997970.977 2860670.979 1754098.59 2237989.871 2741456.913 2185605.665 2561601.083 2742245.774 2399603.813 0.914642877 1.249360816 1.192143038 0.730995084 0.93264974 1.142462309 0.910819383 1.067510007 1.142791056 1 21.1943648 S(ph)MSIDDTPR ddPTM_HeLa_A485_30min_R1 1 SMSIDDTPR 9 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0C4DGY6;A0A1B0GVW2 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.998)MS(0.002)IDDTPR 211.84 2.22E-10 1550300000 731380 883370 849870 726170 1010900 851110 988850 1134300 716180 886120 TRUE FALSE FALSE 894072.9578 986672.4372 1164272.279 765838.8283 910251.2465 895672.8035 777574.1193 856111.1465 859910.7568 665226.5918 1.344012655 1.483212561 1.750189023 1.151245061 1.368332622 1.346417618 1.168886104 1.286946669 1.292658423 1 19.34348631 -7.432846843 0.132816809 0.769102359 1.74143035 0.442713451 0.143761793 5.432506674 0.74307108 2.384381053 2.395469724 3.69E-08 7.432846843 0.972327992 S(ph)MSIDDTPR ddPTM_HeLa_A486_30min_R1 4 SMSIDDTPR 9 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0C4DGY6;A0A1B0GVW2 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(1)MSIDDTPR;S(0.999)MS(0.001)IDDTPR;S(0.987)MS(0.013)IDDTPR;S(0.983)MS(0.017)IDDTPR ;;; 267.45 5.64E-22 2870310000 1843810 2128720 1713570 711057 2404980 1957660 2061280 2197690 1760420 1930340 TRUE FALSE FALSE 1714568.44 1960032.475 2377110.195 1655376.631 2103324.983 1716143.813 1545525.942 1697323.962 1913014.623 1446970.3 1.184936858 1.354576853 1.642818927 1.144029446 1.453606189 1.186025597 1.068111725 1.173019213 1.322082854 1 20.46460388 -6.386612218 5.974101603 1.151757418 1.359452663 0.32172415 0.150259956 0.300391911 13.40021699 0.053050248 0.046552901 4.11E-07 6.386612218 0.207695245 S(ph)MTDVLTMLR ddPTM_HeLa_A486_30min_R1 1 SMTDVLTMLR 10 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 S(0.999)MT(0.001)DVLTMLR 107.03 0.00089167 23929000 70328 74724 37787 38721 64113 84255 108490 90851 51538 83701 TRUE FALSE FALSE 65398.37037 68802.5981 52419.13837 90144.44485 56071.34971 73860.47474 81344.65451 70166.21056 56005.35534 62741.7248 1.042342565 1.096600362 0.835474934 1.436754331 0.893685181 1.177214604 1.296500132 1.118334104 0.89263334 1 15.93713757 -4.258910756 19.11896418 1.093736083 1.042342091 0.001413362 0.179528455 82.22272315 620393.5404 0.043100671 0.272456658 5.51E-05 4.258910756 -0.051393992 S(ph)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR ddPTM_HeLa_A485_30min_R1 6 SMVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR 32 0 F8VXI9;Q14161-4;Q14161-3;Q14161;R4GNG3;F8WAK2;Q14161-9;Q14161-6;Q14161-10;Q14161-8;Q14161-5;Q14161-11;Q14161-7 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR ;;;;; 181.96 5.68E-21 681897000 45552.5 67331.7 73857.8 64555.3 84057.9 62598.9 93343 95803.2 62276.8 86649.1 TRUE FALSE FALSE 55685.49647 75205.55661 101180.8737 68081.79258 75688.80033 65876.48161 73399.50551 72307.31499 74775.18252 65049.07403 0.856053638 1.156135698 1.555454481 1.04662201 1.163564608 1.012719744 1.128371258 1.111581004 1.149519553 1 15.9892409 S(ph)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR ddPTM_HeLa_A486_30min_R1 4 SMVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR 32 0 F8VXI9;Q14161-4;Q14161-3;Q14161;R4GNG3;F8WAK2;Q14161-9;Q14161-6;Q14161-10;Q14161-8;Q14161-5;Q14161-11;Q14161-7 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR;S(1)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR ;;; 217.37 5.71E-39 743628000 18747.9 27850.5 24646.2 1070.3 23481 23901.8 25370.6 22866.5 14936.1 26900.1 TRUE FALSE FALSE 17433.76902 25643.52495 34189.86869 2491.71249 20535.79403 20953.03893 19022.60754 17660.29712 16230.77317 20164.13987 0.864592744 1.271739093 1.695577838 0.123571474 1.018431441 1.039123864 0.943387998 0.87582695 0.804932582 1 14.29950425 -5.231105794 24.99890707 0.845524401 1.27674665 0.301975262 0.311434692 911.9754164 751588.0083 0.08418614 0.145791576 5.87E-06 5.231105794 0.43122225 S(ph)NENLDKIDMSLDDIIK ddPTM_HeLa_A485_30min_R1 1 SNENLDKIDMSLDDIIK 17 1 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 0 S(1)NENLDKIDMSLDDIIK 128.55 7.33E-06 14727000 14982 9017 4534.8 25093 10502 14933 30374 25289 13743 42906 TRUE FALSE FALSE 18314.69421 10071.45971 6212.411229 26463.76705 9456.384005 15714.86879 23884.34677 19086.8331 16501.09404 32210.32383 0.568597022 0.312678002 0.192870189 0.821592704 0.293582395 0.48788298 0.741512159 0.592568805 0.512292088 1 14.97523554 -14 0.126329863 2.7069359 0.273688212 0.441724996 0.178376248 135.9063996 1.092674942 58.46932566 1.474602838 1.00E-14 14 -2.433247688 S(ph)NFSNSADDIK ddPTM_HeLa_A485_30min_R1 5 SNFSNSADDIK 11 0 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 S(1)NFSNSADDIK;S(0.998)NFS(0.002)NSADDIK;S(0.998)NFS(0.002)NSADDIK;S(1)NFSNSADDIK;S(0.998)NFS(0.002)NSADDIK ;;;; 238.06 1.01E-21 2171210000 1726790 1545890 1170930 2438070 1998170 1598970 2454280 2481740 1213720 2844730 TRUE FALSE FALSE 2110908.478 1726668.388 1604105.733 2571255.591 1799225.179 1682689.597 1929903.028 1873089.374 1457302.471 2135591.164 0.988442223 0.808520103 0.751129598 1.204001793 0.842495141 0.78792684 0.903685621 0.877082377 0.682388322 1 21.02620405 S(ph)NFSNSADDIK ddPTM_HeLa_A486_30min_R1 5 SNFSNSADDIK 11 0 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 S(1)NFSNSADDIK;S(0.998)NFS(0.002)NSADDIK;S(1)NFSNSADDIK;S(0.998)NFS(0.002)NSADDIK;S(0.929)NFS(0.071)NSADDIK ;;;; 212.55 4.08E-16 2212210000 1103773 1186571 704260 634305 1173812 1364529 1763949 1614969 876264 1766736 TRUE FALSE FALSE 1026404.213 1092542.793 976968.3327 1476694.096 1026581.554 1196187.285 1322590.303 1247275.813 952219.2691 1324333.806 0.775034367 0.824975386 0.7377055 1.115046742 0.775168276 0.903236994 0.998683487 0.941813769 0.719017565 1 20.33683538 S(ph)NGDLSPK ddPTM_HeLa_A485_30min_R1 3 SNGDLSPK 8 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 S(1)NGDLSPK;S(1)NGDLSPK;S(1)NGDLSPK ;; 136.27 0.0004747 1784180000 2623780 2134540 1517060 3116070 2120510 2211110 3189710 2570340 1803000 4293860 TRUE FALSE FALSE 3207430.809 2384155.885 2078283.624 3286293.014 1909384.579 2326880.301 2508202.401 1939960.085 2164845.562 3223479.725 0.995021245 0.739621803 0.64473296 1.019486175 0.592336463 0.721853556 0.778103979 0.601821711 0.67158653 1 21.62018748 -4.261442519 16.14496017 0.7395917 0.995036225 0.203448578 0.142210687 0.066124167 14546.42812 0.033623626 0.187224061 5.48E-05 4.261442519 0.255444525 S(ph)NGDLSPK ddPTM_HeLa_A486_30min_R1 2 SNGDLSPK 8 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 S(0.999)NGDLS(0.001)PK;S(0.923)NGDLS(0.077)PK ; 147.72 0.00028503 1098660000 991750 867560 498600 456930 694270 1036700 1233300 1058100 756320 1507300 TRUE FALSE FALSE 922233.4464 798811.386 691671.273 1063756.132 607188.1828 908802.4944 924715.2955 817193.7282 821878.4266 1129862.269 0.816235281 0.706998904 0.612173087 0.941491862 0.537400176 0.804348034 0.818431875 0.723268447 0.727414703 1 20.10771549 -13.99997852 0.474129305 7.898283074 0.738889377 0.338388509 0.107582407 2018.10977 10.63311105 14696.20895 0.052120055 1.00E-14 13.99997852 -7.159393697 S(ph)NIDISSGLEDEEPKRPLPR ddPTM_HeLa_A485_30min_R1 2 SNIDISSGLEDEEPKRPLPR 20 2 Q9BZ71;Q9BZ71-3 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 0 S(1)NIDISSGLEDEEPKRPLPR;S(1)NIDISSGLEDEEPKRPLPR ; 239.47 1.74E-46 1049570000 352000 322940 244260 460760 331200 331470 489390 449900 281060 589930 TRUE FALSE FALSE 430301.1856 360705.0238 334621.9385 485930.1521 298224.5651 348825.2566 384827.8286 339561.3196 337466.164 442871.3079 0.971616761 0.814469164 0.755573758 1.097226538 0.67338877 0.787644741 0.868938271 0.766726843 0.761995997 1 18.75652801 -4.257662695 23.46270141 0.828980972 0.971616887 0.100991488 0.119448387 358.2244757 2225241.297 0.028558249 0.204557985 5.53E-05 4.257662695 0.142635915 S(ph)NIDISSGLEDEEPKRPLPR ddPTM_HeLa_A486_30min_R1 3 SNIDISSGLEDEEPKRPLPR 20 2 Q9BZ71;Q9BZ71-3 Q9BZ71 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 0 S(1)NIDISSGLEDEEPKRPLPR;S(1)NIDISSGLEDEEPKRPLPR;S(1)NIDISSGLEDEEPKRPLPR ;; 220.13 1.11E-35 868800000 658131 705184 356517 317000 605549 690878 875830 771760 534053 974910 TRUE FALSE FALSE 611999.4155 649302.6516 494569.9303 737992.0203 529595.3979 605644.4967 656688.0704 596047.0954 580345.144 730786.1904 0.837453449 0.888498798 0.676764198 1.00986038 0.724692673 0.828757446 0.898604926 0.815624465 0.794138083 1 19.47908985 -10.44595072 2.887243034 1.004221856 0.831352533 0.252338733 0.087523571 31806472.24 36135540.64 1091706.659 0.021817764 3.58E-11 10.44595072 -0.172869323 S(ph)NLDITVGSR ddPTM_HeLa_A486_30min_R1 3 SNLDITVGSR 10 0 P42356;P42356-2 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 S(1)NLDITVGSR;S(1)NLDITVGSR;S(1)NLDITVGSR ;; 149.82 3.90E-06 371075000 195752 250431 173126 77216 217389 192312 217341 189003 166938 179344 TRUE FALSE FALSE 182030.7957 230585.9355 240165.0237 179762.7503 190122.0445 168586.5007 162959.983 145971.1428 181408.3203 134435.0951 1.354042228 1.715221278 1.786475649 1.337171296 1.414229257 1.254036386 1.212183343 1.085811281 1.349411924 1 17.03655029 -5.914911953 1.169579528 1.168777566 1.615683364 0.600102554 0.148128905 0.320406718 0.927581765 0.065357735 0.081899438 1.22E-06 5.914911953 0.446905798 S(ph)NMSPDKPVSVK ddPTM_HeLa_A485_30min_R1 1 SNMSPDKPVSVK 12 1 Q9Y6M7-7;Q9Y6M7-13;Q9Y6M7-6;Q9Y6M7-8;Q9Y6M7-3;H7C3C4;Q9Y6M7-5 Q9Y6M7-7 SLC4A7 Sodium bicarbonate cotransporter 3;Anion exchange protein 1 0 S(0.677)NMS(0.323)PDKPVSVK 67.358 0.0067753 264970000 545250 346000 179000 909020 375330 460920 752490 672820 355980 1540400 TRUE FALSE FALSE 666538.9814 386461.6902 245219.5488 958677.4608 337960.8273 485053.0585 591714.3642 507809.8401 427421.9208 1156406.629 0.576388067 0.334191867 0.212053047 0.829014152 0.292250856 0.419448528 0.51168365 0.439127403 0.369612133 1 20.14121735 -10.57254663 2.987161899 1.029501681 0.440855253 0.51298693 0.162911249 102264516.7 112666149.9 24064640.9 0.041911885 2.68E-11 10.57254663 -0.588646428 S(ph)NPDFLKK ddPTM_HeLa_A485_30min_R1 5 SNPDFLKK 8 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)NPDFLKK;S(1)NPDFLKK;S(1)NPDFLKK;S(1)NPDFLKK;S(1)NPDFLKK ;;;; 106.01 0.00082644 2390355000 5269730 3183590 2513580 8397950 5554590 4269630 7327790 6066410 4076160 11090960 TRUE FALSE FALSE 6441963.258 3555883.157 3443457.841 8856708.744 5001555.516 4493181.225 5762147.804 4578613.436 4894207.923 8326187.786 0.773699011 0.427072179 0.413569563 1.06371715 0.600701743 0.539644474 0.692051147 0.549905137 0.587808977 1 22.98922467 -10.11393022 4.805681328 1.000020725 0.624446163 0.281823028 0.178293311 243065180.5 0.075253434 55743.90561 0.043427862 7.69E-11 10.11393022 -0.375574563 S(ph)NPDFLKK ddPTM_HeLa_A486_30min_R1 4 SNPDFLKK 8 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)NPDFLKK;S(1)NPDFLKK;S(1)NPDFLKK;S(1)NPDFLKK ;;; 128.85 0.00033349 2576060000 6150910 9545370 3719190 4369150 8007600 11284370 13166890 12318890 6708860 11037300 TRUE FALSE FALSE 5719762.972 8788960.118 5159359.971 10171602 7003212.14 9892219.16 9872394.857 9514147.666 7290389.387 8273488.239 0.691336327 1.062304056 0.623601536 1.22942122 0.846464265 1.195652774 1.19325665 1.149956027 0.881174805 1 22.98006429 -5.267468777 24.99219055 1.078046119 0.819402981 0.374718874 0.163526809 519.4854538 2153297.435 0.043980532 0.067152511 5.40E-06 5.267468777 -0.258643139 S(ph)NPEGAEDR ddPTM_HeLa_A485_30min_R1 5 SNPEGAEDR 9 0 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 S(1)NPEGAEDR;S(1)NPEGAEDR;S(1)NPEGAEDR;S(1)NPEGAEDR;S(1)NPEGAEDR ;;;; 210.84 2.82E-10 3527200000 793979 882543 801336 1096118 1134753 875473 1159580 1065503 963704 1552808 TRUE FALSE FALSE 970596.8894 985748.7267 1097783.533 1155996.151 1021773.007 921311.4125 911826.2601 804186.7186 1157110.553 1165721.543 0.832614697 0.845612516 0.941720207 0.991657191 0.876515505 0.790335752 0.78219903 0.689861763 0.992613168 1 20.15279178 -6.00905022 24.48102238 0.827996724 0.905644948 0.033070124 0.09844673 745.8939657 2017664.943 0.031176941 0.033560977 9.79E-07 6.00905022 0.077648224 S(ph)NPEGAEDR ddPTM_HeLa_A486_30min_R1 2 SNPEGAEDR 9 0 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 S(1)NPEGAEDR;S(1)NPEGAEDR ; 200.19 9.21E-10 3051800000 771150 922010 788100 362540 939930 1059800 1031320 918030 975150 1032250 TRUE FALSE FALSE 717096.3672 848946.5697 1093273.426 844011.4418 822035.2149 929052.6513 773272.8278 709014.6095 1059676.787 773767.8812 0.926759025 1.097159226 1.412921695 1.090781179 1.062379604 1.200686503 0.999360204 0.916314345 1.369502163 1 19.56154132 -6.760381392 24.99985734 1.064320382 1.13796833 0.03147455 0.160357919 109.5679552 2589156.999 0.064366572 0.046961684 1.74E-07 6.760381392 0.073647948 S(ph)NPQHRESWPGMGSGEAPTPLQPPEEVTPHPATPAR ddPTM_HeLa_A486_30min_R1 1 SNPQHRESWPGMGSGEAPTPLQPPEEVTPHPATPAR 36 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 S(0.564)NPQHRES(0.436)WPGMGSGEAPTPLQPPEEVTPHPATPAR 83.566 0.0001183 554170000 30195 23784 24854 3664.4 31184 21787 27350 31673 21935 26402 TRUE FALSE FALSE 28078.48643 21899.26922 34478.13441 8530.908389 27272.61194 19099.14145 20506.74072 24461.74932 23836.34346 19790.76735 1.41876694 1.106539672 1.742132268 0.431054958 1.378047221 0.965053104 1.03617714 1.236018234 1.204417345 1 14.27253993 -5.22097419 24.99998009 1.056982438 1.39088539 0.286717934 0.27672992 744.6155756 460033.3498 0.071372943 0.123619719 6.01E-06 5.22097419 0.333902952 S(ph)NPSIQATLNK ddPTM_HeLa_A485_30min_R1 3 SNPSIQATLNK 11 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 S(0.999)NPS(0.001)IQATLNK;S(0.996)NPS(0.004)IQATLNK;S(1)NPSIQATLNK ;; 136.33 2.04E-05 791160000 472387 586606 394338 677780 669280 553903 713440 900920 462270 851970 TRUE FALSE FALSE 577467.8584 655204.4689 540220.036 714805.4052 602644.1332 582904.5046 561007.7157 679967.9574 555043.3488 639589.5583 0.902872555 1.024413955 0.844635484 1.117600179 0.942235728 0.911372766 0.877137077 1.063131736 0.867811773 1 19.28678686 -5.931393719 25 0.941773556 0.974840202 0.025681112 0.08582608 219.7045715 80056.42542 0.025562421 0.028985057 1.17E-06 5.931393719 0.033066646 S(ph)NPSIQATLNK ddPTM_HeLa_A486_30min_R1 4 SNPSIQATLNK 11 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 S(0.999)NPS(0.001)IQATLNK;S(0.997)NPS(0.003)IQATLNK;S(0.999)NPS(0.001)IQATLNK;S(1)NPSIQATLNK ;;; 153.7 4.44E-07 1305430000 1280100 1259720 734610 662796 1183250 1286300 1623890 1552430 974240 1860000 TRUE FALSE FALSE 1190371.6 1159895.199 1019070.666 1543022.584 1034835.752 1127609.384 1217575.546 1198975.578 1058687.908 1394243.893 0.853775732 0.831917002 0.73091277 1.106709229 0.742220035 0.808760497 0.873287344 0.859946803 0.759327627 1 20.41105152 -10.18796786 4.836332486 1.000018589 0.842774259 0.182780807 0.100931138 1.95E-05 3.28E-06 0.094232597 0.022852061 6.49E-11 10.18796786 -0.157244331 S(ph)NQIPTEVR ddPTM_HeLa_A485_30min_R1 2 SNQIPTEVR 9 0 Q9BWH2 Q9BWH2 FUNDC2 FUN14 domain-containing protein 2 1 0 S(0.997)NQIPT(0.003)EVR;S(1)NQIPTEVR ; 89.43 0.0036598 1191060000 287520 439670 362320 513760 474840 471170 587590 708150 473810 997200 TRUE FALSE FALSE 351477.8321 491085.5819 496357.2454 541825.4079 427563.2623 495839.7326 462046.5963 534475.1022 568899.321 748616.3921 0.469503254 0.655990955 0.66303283 0.723769094 0.571137991 0.662341538 0.617200747 0.713950573 0.759934363 1 19.51386711 -14 0.159681302 2.34805759 0.552239228 0.769170811 0.06319323 64.73978302 0.594058622 27.41966473 0.276964452 1.00E-14 14 -1.795818362 S(ph)NQIPTEVR ddPTM_HeLa_A486_30min_R1 1 SNQIPTEVR 9 0 Q9BWH2 Q9BWH2 FUNDC2 FUN14 domain-containing protein 2 1 0 S(1)NQIPTEVR 117.98 0.00055952 571910000 196570 201210 186170 46410 294100 175480 195600 195920 264340 270990 TRUE FALSE FALSE 182791.4581 185265.3868 258260.0098 108044.8254 257211.2356 153831.0617 146658.8112 151313.2929 287253.204 203132.3402 0.899863891 0.912042793 1.271387951 0.531893766 1.266224942 0.757294784 0.721986519 0.744900063 1.414118519 1 17.63206042 -7.754800237 24.9999922 1.207059283 0.892587165 0.22229136 0.238452056 207.2976107 780610.7087 0.162665858 0.058328873 1.76E-08 7.754800237 -0.314472118 S(ph)NS(ph)PLPVPPSK ddPTM_HeLa_A485_30min_R1 1 SNSPLPVPPSK 11 0 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)NS(1)PLPVPPSK 144.8 2.01E-06 193520000 483580 431790 196170 638450 295050 347420 492760 430350 221400 625230 TRUE FALSE FALSE 591150.7027 482284.0844 268741.4463 673326.9069 265673.786 365610.374 387477.8005 324805.9877 265832.9492 469371.6675 1.259451185 1.027510005 0.572555748 1.434528229 0.566020074 0.778935755 0.825524477 0.692001691 0.566359172 1 18.84037123 -1 0.472308787 0.753126589 13.56529076 0.237471 0.251127405 136.4958967 1.563360094 0.143935838 1709.068541 0.1 1 12.81216417 S(ph)NS(ph)PLPVPPSK ddPTM_HeLa_A486_30min_R1 3 SNSPLPVPPSK 11 0 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)NS(1)PLPVPPSK;S(1)NS(1)PLPVPPSK;S(1)NS(1)PLPVPPSK ;; 89.466 0.0042578 255100000 1457730 1206710 383780 519870 553650 1033050 1226500 936410 786200 2564000 TRUE FALSE FALSE 1355550.655 1111085.905 532389.894 1210283.633 484206.0544 905602.7943 919616.7274 723209.8847 854348.449 1921957.711 0.705296816 0.57810112 0.277003958 0.629713976 0.251933771 0.47118768 0.478479168 0.376288136 0.4445199 1 20.87414516 -10.0083556 5.257030988 1.000001832 0.461772982 0.576019806 0.136815722 358996303.7 112.4455569 14318.79756 0.032408797 9.81E-11 10.0083556 -0.53822885 S(ph)NS(ph)SPEMKK ddPTM_HeLa_A485_30min_R1 1 SNSSPEMKK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)NS(0.646)S(0.354)PEMKK 64.65 0.0098916 244270000 341220 266170 119370 675180 288250 380350 608070 716220 290240 933020 TRUE FALSE FALSE 417123.2118 297296.2661 163529.9304 712063.3738 259550.8179 400264.5379 478150.877 540565.922 348488.5058 700435.285 0.595519987 0.424445017 0.233469007 1.016601232 0.370556457 0.571451134 0.682648186 0.771757125 0.49753134 1 19.41789224 -13.99999999 0.119884491 2.394699944 0.366756667 0.298519509 0.204529402 191.6939511 1.487995472 64.69505492 1.951612282 1.00E-14 13.99999999 -2.027943276 S(ph)NS(ph)SPEMKK ddPTM_HeLa_A486_30min_R1 1 SNSSPEMKK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.994)NS(0.533)S(0.473)PEMKK 50.675 0.0070555 0 351060 234960 111930 181300 210280 439970 421380 333570 304930 621540 TRUE FALSE FALSE 326452.5069 216340.9139 155272.2936 422075.5624 183904.7216 385690.9747 315946.2671 257623.3928 331361.5779 465902.3385 0.700688706 0.464348204 0.333272192 0.90593141 0.39472805 0.827836529 0.678138402 0.552955784 0.711225402 1 18.82966805 -14 0.154753276 2.423685925 0.5001108 0.331448869 0.170656453 153.8162486 1.390493628 67.04083992 0.774319267 1.00E-14 14 -1.923575125 S(ph)NSAPLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_A485_30min_R1 4 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR ;;; 273.39 2.97E-75 6253220000 729632 880251 858675 802741 1179960 890020 1153450 1237780 828427 1182969 TRUE FALSE FALSE 891936.1212 983188.6973 1176334.615 846592.7082 1062479.039 936620.071 907005.9847 934212.5142 994684.7001 888076.5992 1.004345934 1.10709898 1.324586884 0.953287936 1.196382204 1.054661357 1.021315037 1.051950378 1.120043813 1 19.76032459 -6.474139288 24.61735013 1.050560945 1.11965619 0.104807545 0.098619236 781.0402204 394488.1876 0.034199883 0.030160609 3.36E-07 6.474139288 0.069095245 S(ph)NSAPLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_A486_30min_R1 6 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR ;;;;; 273.39 2.97E-75 6953610000 1371388 1480389 1172574 245409 1672240 1398730 1515450 1592650 1291612 1340508 TRUE FALSE FALSE 1275260.783 1363077.584 1626626.055 571324.5543 1462492.066 1226168.914 1136268.381 1230038.362 1403569.968 1004836.072 1.269123212 1.356517369 1.618797435 0.568574885 1.455453389 1.220267612 1.130799753 1.224118438 1.396814871 1 19.93852873 S(ph)NSDVTISDIDAEDVLDQNAVNPNTGAALHR ddPTM_HeLa_A485_30min_R1 1 SNSDVTISDIDAEDVLDQNAVNPNTGAALHR 31 0 Q9P2F8 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 S(0.499)NS(0.499)DVT(0.002)ISDIDAEDVLDQNAVNPNTGAALHR 212.72 7.31E-30 488680000 170840 214370 198060 227040 290450 244670 281910 308850 219510 342540 TRUE FALSE FALSE 208842.7686 239438.7067 271330.636 239442.6203 261531.7782 257480.5429 221677.6255 233104.0532 263563.6435 257151.082 0.812140346 0.931120744 1.055140946 0.931135963 1.017035496 1.001281196 0.862052082 0.906486768 1.024936942 1 17.9722567 -4.317697772 3.782228215 0.96943437 0.804087953 0.425068413 0.056471839 0.226588594 5.810024455 0.014726225 0.092371904 4.81E-05 4.317697772 -0.165346417 S(ph)NSDVTISDIDAEDVLDQNAVNPNTGAALHR ddPTM_HeLa_A486_30min_R1 1 SNSDVTISDIDAEDVLDQNAVNPNTGAALHR 31 0 Q9P2F8 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 S(0.446)NS(0.446)DVT(0.103)IS(0.005)DIDAEDVLDQNAVNPNTGAALHR 57.964 0.012855 417410000 13840 12100 14563 11873 17008 15590 15860 24245 12028 25338 TRUE FALSE FALSE 12869.88747 11141.15193 20202.18361 27640.94403 14874.69805 13666.66431 11891.66025 18724.94276 13070.59672 18993.19988 0.677605014 0.586586357 1.063653504 1.455307384 0.783159138 0.719555651 0.626100938 0.98587615 0.688172441 1 14.21319536 S(ph)NSEDKLNSK ddPTM_HeLa_A485_30min_R1 1 SNSEDKLNSK 10 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 S(0.604)NS(0.396)EDKLNSK 51.939 0.0098549 0 407750 253670 127330 576930 284660 317640 569630 585380 236550 788230 TRUE FALSE FALSE 498452.5808 283334.4999 174434.6656 608446.225 256318.2509 334271.1392 447923.8971 441814.6372 284023.4152 591738.7673 0.842352417 0.478816862 0.294783231 1.028234516 0.43316116 0.564896467 0.75696223 0.746637979 0.479981084 1 19.17460089 -13.99999997 0.369286283 5.929108113 0.613367514 0.219866213 0.209091686 823.2592951 6.395915207 3236.991696 0.145768309 1.00E-14 13.99999997 -5.315740599 S(ph)NSEDKLNSK ddPTM_HeLa_A486_30min_R1 1 SNSEDKLNSK 10 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 S(0.5)NS(0.5)EDKLNSK 84.566 0.0023013 288890000 325920 253270 108180 227370 191480 463030 467590 351470 252500 638560 TRUE FALSE FALSE 303074.6911 233199.9628 150070.1932 529328.8506 167462.7929 405906.0663 350594.0363 271447.9535 274386.9033 478660.4197 0.63317266 0.48719291 0.313521208 1.10585465 0.349857197 0.848004242 0.732448354 0.567099226 0.573239173 1 18.86864299 -14 0.215644493 2.797069858 0.576668416 0.203120102 0.221907362 246.9747427 2.468550908 193.3628055 0.436803068 1.00E-14 14 -2.220401442 S(ph)NSELEDEILCLEK ddPTM_HeLa_A485_30min_R1 3 SNSELEDEILCLEK 14 0 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8;A0A2R8YE69;G3V5K6;A4D2H0;A4FU28;Q86UF2;A0A5F9ZHA4;Q8IX94;P0CG41 Q96PC5;A0A5F9ZHA4 MIA2;CTAGE5;CTAGE15;CTAGE9;CTAGE6;CTAGE4;CTAGE8 Melanoma inhibitory activity protein 2;cTAGE family member 15;cTAGE family member 9;cTAGE family member 6;cTAGE family member 4;cTAGE family member 8 1 0 S(0.97)NS(0.03)ELEDEILCLEK;S(0.839)NS(0.161)ELEDEILCLEK;S(0.5)NS(0.5)ELEDEILCLEK ;; 189.87 1.11E-17 102304000 100553.9 67917.6 45729.9 119146.8 72329.8 73932.3 93437.1 122453 63980.5 217076 TRUE FALSE FALSE 122921.7681 75859.97252 62647.29299 125655.488 65128.39115 77803.28091 73473.50027 92421.20975 76820.79949 162962.9482 0.754292737 0.465504419 0.384426605 0.771067837 0.399651527 0.477429267 0.450860156 0.567130202 0.471400403 1 17.31418446 -10.09372546 4.642327964 1.000025038 0.521804691 0.549863707 0.128352624 166690446.3 0.05540155 52873.6898 0.029841791 8.06E-11 10.09372546 -0.478220347 S(ph)NSELEDEILCLEK ddPTM_HeLa_A486_30min_R1 2 SNSELEDEILCLEK 14 0 Q96PC5;Q96PC5-7;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;G3V599;Q96PC5-6;Q96PC5-12;Q96PC5-14;Q96PC5-5;Q96PC5-8;A0A2R8YE69;G3V5K6;A4D2H0;A4FU28;Q86UF2;A0A5F9ZHA4;Q8IX94;P0CG41 Q96PC5;A0A5F9ZHA4 MIA2;CTAGE5;CTAGE15;CTAGE9;CTAGE6;CTAGE4;CTAGE8 Melanoma inhibitory activity protein 2;cTAGE family member 15;cTAGE family member 9;cTAGE family member 6;cTAGE family member 4;cTAGE family member 8 1 0 S(0.978)NS(0.022)ELEDEILCLEK;S(0.994)NS(0.006)ELEDEILCLEK ; 219.01 1.18E-27 58786000 75776 77872 44407 28136 80471 80986 91200 76563 73949 97687 TRUE FALSE FALSE 70464.49371 71701.13912 61602.57966 65502.02991 70377.57682 70994.77073 68380.79538 59131.27626 80358.95886 73225.53936 0.962293953 0.979182123 0.841271778 0.894524376 0.961106978 0.969535648 0.933838057 0.807522577 1.097417097 1 16.16005929 -7.780807369 24.99980418 1.048708578 0.920909492 0.443561332 0.058220178 263.3710569 339944.4144 0.05627063 0.014615669 1.66E-08 7.780807369 -0.127799086 S(ph)NSFSDER ddPTM_HeLa_A486_30min_R1 3 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.992)NS(0.007)FSDER;S(0.988)NS(0.007)FS(0.005)DER;S(0.982)NS(0.013)FS(0.005)DER ;; 113.03 0.0010906 728339000 803978 1258600 1012501 284457 1192940 1004400 984670 1002340 989830 942850 TRUE FALSE FALSE 747623.2939 1158863.952 1404568.503 662230.2717 1043310.341 880487.34 738295.1512 774129.0629 1075629.261 706754.2231 1.057826426 1.63969866 1.987350704 0.937002214 1.476199657 1.245818293 1.044627859 1.095329943 1.521928312 1 19.43084907 -5.276899493 24.99718862 1.201028955 1.569432659 0.274708381 0.277090537 1044.746433 1689230.13 0.077781575 0.115829157 5.29E-06 5.276899493 0.368403704 S(ph)NSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_A485_30min_R1 3 SNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 33 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.325)NS(0.325)FS(0.325)DEREFS(0.02)GPS(0.001)T(0.001)PT(0.001)GTLEFEGGEVSLEGGK;S(0.329)NS(0.329)FS(0.329)DEREFS(0.013)GPSTPTGTLEFEGGEVSLEGGK;S(0.306)NS(0.306)FS(0.306)DEREFS(0.082)GPSTPTGTLEFEGGEVSLEGGK ;; 155.58 3.62E-10 464814000 76534 78364 76383 129102 170892 128237 175828 184435 110158 216300 TRUE FALSE FALSE 93558.72426 87527.98812 104640.2503 136154.5154 153877.3924 134951.291 138260.9114 139202.0271 132265.7002 162380.3907 0.57617009 0.53903053 0.644414327 0.838491118 0.947635313 0.831081207 0.851463103 0.85725885 0.81454232 1 17.3090179 -5.18707077 2.773043368 0.874290825 0.560863955 0.864372023 0.053596119 0.090144975 1.355584538 0.014997561 0.02867728 6.50E-06 5.18707077 -0.31342687 S(ph)NSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_A486_30min_R1 3 SNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 33 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.312)NS(0.312)FS(0.312)DEREFS(0.042)GPS(0.007)T(0.007)PT(0.007)GT(0.001)LEFEGGEVSLEGGK;S(0.326)NS(0.326)FS(0.326)DEREFS(0.019)GPS(0.001)T(0.001)PT(0.001)GTLEFEGGEVSLEGGK;S(0.325)NS(0.325)FS(0.325)DEREFS(0.025)GPSTPTGTLEFEGGEVSLEGGK ;; 276.53 5.74E-78 935627000 213793 238908 184636 171269 384326 310608 422136 453081 231555 324721 TRUE FALSE FALSE 198807.2147 219976.06 256132.0039 398722.8875 336120.2494 272288.343 316513.1079 349924.347 251626.3738 243408.748 0.816762817 0.903731118 1.052271153 1.63807953 1.380888124 1.118646496 1.300335795 1.437599716 1.033760602 1 17.89302149 -5.017856297 7.607903156 1.294665418 0.887467152 0.44903387 0.183593359 0.141487135 44.70696332 0.049100993 0.091215641 9.60E-06 5.017856297 -0.407198265 S(ph)NSGRELTDEEILASVMIK ddPTM_HeLa_A485_30min_R1 12 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.498)NS(0.498)GRELT(0.004)DEEILASVMIK;S(0.485)NS(0.485)GRELT(0.03)DEEILASVMIK;S(0.5)NS(0.5)GRELTDEEILASVMIK;S(0.486)NS(0.486)GRELT(0.028)DEEILASVMIK;S(0.498)NS(0.498)GRELT(0.004)DEEILASVMIK;S(0.607)NS(0.392)GRELT(0.001)DEEILASVMIK;S(0.498)NS(0.498)GRELT(0.003)DEEILASVMIK;S(0.636)NS(0.358)GRELT(0.006)DEEILASVMIK;S(0.521)NS(0.307)GRELT(0.171)DEEILASVMIK;S(0.332)NS(0.332)GRELT(0.332)DEEILAS(0.003)VMIK;S(0.496)NS(0.496)GRELT(0.009)DEEILASVMIK;S(0.499)NS(0.499)GRELT(0.001)DEEILASVMIK ;;;;;;;;;;; 196.02 1.34E-19 1889679000 1351595.1 1393203.5 1411336.1 2222481 3201039 2123753.2 3464539.6 4048663 2027681.2 3458881 TRUE FALSE FALSE 1652252.767 1556126.53 1933448.054 2343889.509 2882332.318 2234949.634 2724312.412 3055722.051 2434618.218 2596645.623 0.636302756 0.599283366 0.744594502 0.902660528 1.110021442 0.860706449 1.049166043 1.17679595 0.937601264 1 21.3082177 -5.236171114 1.88512817 1.025730832 0.615552679 0.790601523 0.084380973 0.149928383 1.034863464 0.026127882 0.054601593 5.81E-06 5.236171114 -0.410178153 S(ph)NSGRELTDEEILASVMIK ddPTM_HeLa_A486_30min_R1 11 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.489)NS(0.489)GRELT(0.023)DEEILASVMIK;S(0.389)NS(0.389)GRELT(0.222)DEEILASVMIK;S(0.588)NS(0.347)GRELT(0.065)DEEILASVMIK;S(0.467)NS(0.467)GRELT(0.066)DEEILASVMIK;S(0.633)NS(0.366)GRELTDEEILASVMIK;S(0.463)NS(0.463)GRELT(0.074)DEEILASVMIK;S(0.495)NS(0.495)GRELT(0.01)DEEILASVMIK;S(0.443)NS(0.443)GRELT(0.114)DEEILASVMIK;S(0.664)NS(0.336)GRELTDEEILASVMIK;S(0.484)NS(0.484)GRELT(0.031)DEEILASVMIK;S(0.496)NS(0.496)GRELT(0.008)DEEILASVMIK ;;;;;;;;;; 249.12 1.77E-46 2106421400 1357020 1418505 1126548 1073570 2222718 1864016 2416224 2523919 1342298 1940351 TRUE FALSE FALSE 1261899.906 1306097.498 1562777.556 2499325.215 1943923.982 1634052.658 1811659.199 1949277.74 1458649.471 1454474.48 0.86759852 0.897985847 1.074461998 1.718369933 1.336512953 1.123466022 1.245576477 1.340193841 1.002870447 1 20.47206655 -5.004678625 17.42480887 1.274597916 0.908640259 0.36256741 0.194882213 4.05969317 15138.95141 0.052404584 0.103031715 9.89E-06 5.004678625 -0.365957658 S(ph)NSLDKHQQSSTLGNSVVR ddPTM_HeLa_A485_30min_R1 1 SNSLDKHQQSSTLGNSVVR 19 1 X6RGR3;Q6ZSL5;A0A088AWN3;A0A0A0MSY4;Q9BZ29-3;Q9BZ29-5;Q9BZ29;Q9BZ29-4 X6RGR3 DOCK9 Dedicator of cytokinesis protein 9 1 0 S(0.613)NS(0.387)LDKHQQSSTLGNSVVR 145.19 1.35E-08 428200000 305850 337660 257750 270690 428410 336790 508810 510380 279250 482640 TRUE FALSE FALSE 373885.2773 377146.3997 353102.4509 285477.1093 385755.9962 354423.8036 400098.5869 385208.5048 335292.9136 362326.7303 1.031900895 1.040901397 0.974541543 0.787899665 1.064663366 0.978188397 1.104248054 1.063152322 0.92538829 1 18.46693172 S(ph)NSLDKHQQSSTLGNSVVR ddPTM_HeLa_A486_30min_R1 1 SNSLDKHQQSSTLGNSVVR 19 1 X6RGR3;Q6ZSL5;A0A088AWN3;A0A0A0MSY4;Q9BZ29-3;Q9BZ29-5;Q9BZ29;Q9BZ29-4 X6RGR3 DOCK9 Dedicator of cytokinesis protein 9 1 0 S(0.799)NS(0.201)LDKHQQSSTLGNSVVR 122.44 4.92E-06 561490000 199910 203900 131260 64338 208110 213560 243860 238240 160590 251810 TRUE FALSE FALSE 185897.3413 187742.2214 182087.3873 149782.1155 182006.9033 187213.1385 182843.6487 183997.9527 174510.0705 188755.137 0.984859773 0.994633706 0.964675135 0.793526035 0.964248741 0.991830694 0.968681709 0.974797061 0.924531503 1 17.52615638 -5.973617383 24.99990028 0.971060198 0.933135524 0.095087454 0.055132973 600.1340577 568678.2941 0.018305353 0.020755651 1.06E-06 5.973617383 -0.037924674 S(ph)NSLPHPAGGGK ddPTM_HeLa_A485_30min_R1 2 SNSLPHPAGGGK 12 0 G5E9A7;Q09019 G5E9A7 DMWD Dystrophia myotonica WD repeat-containing protein 1 0 S(0.612)NS(0.388)LPHPAGGGK;S(0.615)NS(0.385)LPHPAGGGK ; 104.41 0.00043569 1091060000 1110870 1129050 901310 1416640 1606440 1310100 1993780 2010790 1188610 1983770 TRUE FALSE FALSE 1357979.199 1261082.576 1234742.076 1494027.456 1446497.193 1378694.81 1567792.615 1517640.6 1427153.124 1489252.648 0.911852802 0.846788876 0.829101817 1.003206178 0.971290664 0.925762873 1.05273784 1.019061878 0.958301553 1 20.50615709 -5.266515442 24.96991733 0.989997346 0.861001934 0.704028986 0.037870458 225.6060338 1109791.587 0.011020266 0.016934426 5.41E-06 5.266515442 -0.128995412 S(ph)NSLPHPAGGGK ddPTM_HeLa_A486_30min_R1 1 SNSLPHPAGGGK 12 0 G5E9A7;Q09019 G5E9A7 DMWD Dystrophia myotonica WD repeat-containing protein 1 0 S(0.619)NS(0.381)LPHPAGGGK 78.932 0.0050163 380590000 648910 596730 361090 260920 644550 714980 856470 909790 545230 868100 TRUE FALSE FALSE 603424.76 549442.9415 500913.7183 607434.9462 563704.5288 626773.037 642172.1472 702650.6776 592490.9754 650722.1096 0.927315595 0.844358803 0.769781311 0.933478265 0.866275359 0.96319616 0.986860808 1.07980145 0.910513054 1 19.31168205 -6.320865281 1.675315261 1.002635717 0.858509322 0.522837186 0.057423701 0.283871183 1.579202049 0.024922476 0.021714205 4.78E-07 6.320865281 -0.144126395 S(ph)NSLPHSAVSNAGSK ddPTM_HeLa_A485_30min_R1 1 SNSLPHSAVSNAGSK 15 0 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 S(0.648)NS(0.352)LPHS(0.001)AVSNAGSK 166.28 3.69E-12 470840000 373530 354130 297970 404880 493450 399640 613010 614920 378190 660050 TRUE FALSE FALSE 456620.4598 395542.423 408201.5026 426997.5692 444320.3854 420564.5324 482035.4057 464109.9058 454089.264 495511.6823 0.921513006 0.798250449 0.823797939 0.86173058 0.89669003 0.848747966 0.972803312 0.936627576 0.916404759 1 18.91855955 -6.817255987 0.627824894 0.977255887 0.840541023 0.549539798 0.041144507 0.581173872 0.461076761 0.036799416 0.025266552 1.52E-07 6.817255987 -0.136714864 S(ph)NSLPHSAVSNAGSK ddPTM_HeLa_A486_30min_R1 2 SNSLPHSAVSNAGSK 15 0 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 S(0.656)NS(0.344)LPHSAVSNAGSK;S(0.5)NS(0.5)LPHS(0.001)AVSNAGSK ; 182.22 6.81E-12 307520000 793720 744940 449250 154590 787540 826280 1032250 1006330 657260 836610 TRUE FALSE FALSE 738084.3268 685908.2414 623211.6313 359893.3325 688759.3897 724341.9746 773970.132 777210.627 714231.826 627117.4106 1.176947593 1.093747725 0.993771853 0.573885091 1.09829416 1.155034069 1.234171016 1.239338302 1.138912449 1 19.25837605 -5.987514275 24.99989246 1.168289237 0.95467225 0.246774469 0.159381397 319.7358296 640196.1016 0.052373206 0.059349321 1.03E-06 5.987514275 -0.213616987 S(ph)NSRLEDQVIGVALQASK ddPTM_HeLa_A485_30min_R1 1 SNSRLEDQVIGVALQASK 18 1 A0A3B3IRW6;Q2KHR3-2;Q2KHR3 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 1 0 S(0.5)NS(0.5)RLEDQVIGVALQASK 148.28 1.91E-08 24271000 22041 22177 27742 43180 68563 32137 52758 58115 30597 66065 TRUE FALSE FALSE 26943.94441 24770.40724 38004.92024 45538.81406 61736.62698 33819.64363 41485.82231 43862.20513 36737.53725 49596.21134 0.543266183 0.499441521 0.766286763 0.918191387 1.244785142 0.68189974 0.836471601 0.884386205 0.740732735 1 15.5979423 -4.909280875 3.246780571 0.896758319 0.518546192 0.518371662 0.144538512 0.196814095 4.106178204 0.040644934 0.096969431 1.23E-05 4.909280875 -0.378212127 S(ph)NSRLEDQVIGVALQASK ddPTM_HeLa_A486_30min_R1 1 SNSRLEDQVIGVALQASK 18 1 A0A3B3IRW6;Q2KHR3-2;Q2KHR3 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 1 0 S(0.5)NS(0.5)RLEDQVIGVALQASK 157.83 3.44E-09 24632000 22983 28318 31530 28079 56323 45931 59023 69167 37925 40425 TRUE FALSE FALSE 21372.01038 26073.97855 43739.2604 65369.33103 49258.44415 40264.50021 44254.82112 53419.184 41212.36954 30302.31688 0.705292947 0.86046155 1.443429576 2.157238712 1.625566928 1.32875979 1.46044348 1.762874576 1.360040214 1 14.88714048 -4.761556126 3.987473724 1.569098206 0.749747834 0.510147641 0.287991485 0.150795083 5.317259717 0.075886398 0.199009027 1.73E-05 4.761556126 -0.819350372 S(ph)NSVSLVPPGSSHTLPR ddPTM_HeLa_A485_30min_R1 2 SNSVSLVPPGSSHTLPR 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 S(0.565)NS(0.357)VS(0.078)LVPPGSSHTLPR;S(0.454)NS(0.454)VS(0.092)LVPPGSSHTLPR ; 69.379 0.0059645 360020000 211640 321396 303521 194990 396950 323770 384920 457860 341208 363450 TRUE FALSE FALSE 258718.5879 358980.4664 415806.0485 205641.81 357428.2642 340722.0966 302678.6975 345569.1171 409685.3159 272848.6038 0.948212981 1.315676391 1.523944204 0.75368467 1.309987514 1.248758805 1.109328372 1.266523311 1.501511498 1 18.05774114 -7.503479232 23.63286892 1.295176185 1.184167199 0.018288987 0.230008609 1348.559637 1642861.081 0.125336565 0.058611895 3.14E-08 7.503479232 -0.111008986 S(ph)NSVSLVPPGSSHTLPR ddPTM_HeLa_A486_30min_R1 1 SNSVSLVPPGSSHTLPR 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 S(0.576)NS(0.401)VS(0.024)LVPPGSSHTLPR 85.737 0.00087027 139210000 119300 109410 86956 17660 123800 86897 116630 112550 107940 76906 TRUE FALSE FALSE 110937.6861 100739.9531 120627.692 41113.37249 108271.8496 76176.53164 87447.94041 86924.82195 117296.3261 57648.23703 1.924389917 1.747494084 2.092478421 0.713176579 1.87814676 1.321402623 1.516923065 1.507848747 2.034690602 1 15.81498887 S(ph)NTPESIAETPPAR ddPTM_HeLa_A486_30min_R1 1 SNTPESIAETPPAR 14 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.578)NT(0.418)PES(0.004)IAETPPAR 56.599 0.037932 337900000 134310 157200 117610 54578 160900 157290 175760 177410 121200 156970 TRUE FALSE FALSE 124895.5626 144742.8995 163151.7417 127060.3422 140718.4217 137885.159 131782.989 137017.6158 131705.7136 117663.6903 1.061462226 1.230140744 1.386593785 1.079860252 1.195937517 1.171858189 1.119997075 1.164485114 1.119340327 1 16.84430966 -8.514081595 0.366769117 0.976368764 1.208556496 0.299211208 0.084632136 3.350660448 0.886790224 0.236132438 0.076662421 3.06E-09 8.514081595 0.232187732 S(ph)NTPILVDGKDVMPEVNK ddPTM_HeLa_A486_30min_R1 1 SNTPILVDGKDVMPEVNK 18 1 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41 P06744-2 GPI Glucose-6-phosphate isomerase 1 0 S(0.557)NT(0.443)PILVDGKDVMPEVNK 55.228 0.016147 111670000 133030 136340 61158 86414 136000 177660 222250 213850 111650 288680 TRUE FALSE FALSE 123705.284 125535.9219 84840.01547 201176.1591 118941.6119 155742.1155 166640.6993 165161.0233 121327.9119 216392.649 0.571670454 0.580130251 0.392065146 0.929681115 0.549656434 0.719719992 0.770084844 0.763246922 0.560684073 1 17.72329197 -14 0.076941646 2.077334838 0.305513276 0.385077624 0.1396326 282.8721497 1.546222759 53.21026383 5.413055025 1.00E-14 14 -1.771821562 S(ph)NTPMGDKDDDDDDDADEKMQSSGIPNGGHIR ddPTM_HeLa_A485_30min_R1 1 SNTPMGDKDDDDDDDADEKMQSSGIPNGGHIR 32 2 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 S(0.5)NT(0.5)PMGDKDDDDDDDADEKMQSSGIPNGGHIR 55.083 0.0081231 618840000 111910 73489 30358 322440 142420 86141 283090 256940 77216 517090 TRUE FALSE FALSE 136803.9934 82082.89928 41588.6875 340054.0807 128240.1647 90651.20956 222605.5089 193925.0621 92712.54293 388188.9793 0.352415964 0.211450875 0.107135158 0.876001378 0.330354986 0.233523398 0.573446236 0.499563544 0.238833527 1 18.56639964 -14 0.274685956 5.303834921 0.344278234 0.430162711 0.212283672 217.8656878 2.106741162 533.5396231 0.259415639 1.00E-14 14 -4.959556687 S(ph)NYNFEKPFLWLAR ddPTM_HeLa_A486_30min_R1 2 SNYNFEKPFLWLAR 14 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 1 0 S(0.999)NY(0.001)NFEKPFLWLAR;S(0.992)NY(0.008)NFEKPFLWLAR ; 76.378 0.0033786 54542000 63353 69589 52946 43459 80984 70858 84426 86142 69928 86206 TRUE FALSE FALSE 58912.28186 64074.5142 73448.10914 101174.7483 70826.23157 62116.26039 63301.72183 66529.34707 75989.41534 64619.45649 0.911680244 0.991566901 1.1366253 1.56570101 1.096051181 0.961262501 0.979607772 1.029555968 1.175952561 1 15.979681 -6.000282865 24.99999992 1.028089633 1.162916498 0.10308501 0.168783266 25.08208023 2217149.079 0.057510756 0.064525825 9.99E-07 6.000282865 0.134826865 S(ph)PAAGSSQSSGWPNDVDAGPASLKK ddPTM_HeLa_A485_30min_R1 2 SPAAGSSQSSGWPNDVDAGPASLKK 25 1 K7EN08;Q14938-6;Q14938-5;Q14938-3;Q14938-4;Q14938 K7EN08 NFIX Nuclear factor 1;Nuclear factor 1 X-type 1 0 S(1)PAAGSSQSSGWPNDVDAGPASLKK;S(0.999)PAAGS(0.001)SQSSGWPNDVDAGPASLKK ; 216.7 3.38E-38 1058380000 425100 372660 248882 460920 459700 423890 553470 586650 351530 592210 TRUE FALSE FALSE 519662.0284 416239.3453 340953.8086 486098.8925 413930.6539 446084.2249 435216.6131 442773.1677 422078.8466 444582.9458 1.16887531 0.936246766 0.76690708 1.09338178 0.931053829 1.003376826 0.978932317 0.995929268 0.949381551 1 18.76209308 S(ph)PAAGSSQSSGWPNDVDAGPASLKK ddPTM_HeLa_A486_30min_R1 2 SPAAGSSQSSGWPNDVDAGPASLKK 25 1 K7EN08;Q14938-6;Q14938-5;Q14938-3;Q14938-4;Q14938 K7EN08 NFIX Nuclear factor 1;Nuclear factor 1 X-type 1 0 S(0.99)PAAGS(0.004)S(0.004)QS(0.001)S(0.001)GWPNDVDAGPASLKK;S(1)PAAGSSQSSGWPNDVDAGPASLKK ; 251.8 1.41E-50 1034700000 370722 329839 139888 128718 318643 322266 415582 378996 268438 447696 TRUE FALSE FALSE 344736.3022 303701.3564 194056.3799 299662.009 278675.8237 282508.0975 311598.988 292706.8842 291706.422 335590.0076 1.027254371 0.904977352 0.578254345 0.892940798 0.830405606 0.841825117 0.928510924 0.872215732 0.869234528 1 18.35634023 -6.74448705 19.98116399 0.906841496 0.837888398 0.085345359 0.110740146 66.11571858 77927.48383 0.043912141 0.033822572 1.80E-07 6.74448705 -0.068953097 S(ph)PACSSLTPSLCK ddPTM_HeLa_A485_30min_R1 1 SPACSSLTPSLCK 13 0 Q96R06;F5GZT2;J3KSV2;J3QRV8 Q96R06 SPAG5 Sperm-associated antigen 5 1 0 S(1)PACSSLTPSLCK 135.81 1.07E-05 71257000 99872 96224 72839 155790 127350 109620 144320 156520 90549 184440 TRUE FALSE FALSE 122088.1818 107476.5598 99785.17718 164300.4132 114670.5868 115359.5337 113484.853 118133.2246 108721.3537 138462.5024 0.881741842 0.776214195 0.720665707 1.186605835 0.828170695 0.833146388 0.819607122 0.85317846 0.785204311 1 17.0791358 S(ph)PADKFPEK ddPTM_HeLa_A485_30min_R1 2 SPADKFPEK 9 1 P12036 P12036 NEFH Neurofilament heavy polypeptide 1 0 S(1)PADKFPEK;S(1)PADKFPEK ; 105.17 0.00056907 734020000 1186520 902010 519520 1807140 1089310 1084770 1647620 1348260 910690 2215900 TRUE FALSE FALSE 1450457.281 1007492.223 711712.067 1905859.482 980854.4716 1141566.88 1295592.527 1017597.121 1093457.13 1663516.911 0.871922174 0.605639905 0.427835787 1.145680858 0.589626992 0.686237015 0.778827386 0.611714323 0.65731651 1 20.6658051 -10.3939414 2.998132145 1.004472871 0.704998973 0.184136065 0.184077299 151212501.7 182397951.9 5836620.838 0.044345566 4.04E-11 10.3939414 -0.299473898 S(ph)PADKFPEK ddPTM_HeLa_A486_30min_R1 2 SPADKFPEK 9 1 P12036 P12036 NEFH Neurofilament heavy polypeptide 1 0 S(1)PADKFPEK;S(1)PADKFPEK ; 102.66 0.00072567 683710000 944670 892630 325080 396750 587910 1005850 1207710 1047260 691960 1486400 TRUE FALSE FALSE 878453.5113 821894.7479 450959.6819 923654.0506 514168.8458 881758.4537 905528.1841 808821.7595 751939.6499 1114195.765 0.788419359 0.737657397 0.404740079 0.828987221 0.461470831 0.791385573 0.812719104 0.725924281 0.674872113 1 20.08757131 S(ph)PAFALK ddPTM_HeLa_A485_30min_R1 5 SPAFALK 7 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 S(1)PAFALK;S(1)PAFALK;S(1)PAFALK;S(1)PAFALK;S(1)PAFALK ;;;; 109.71 0.0030485 3660710000 4229110 4085620 3258320 4340690 5093640 4360750 5346000 5071330 3443170 5308800 TRUE FALSE FALSE 5169860.929 4563397.719 4463708.158 4577810.903 4586499.317 4589072.127 4203783.427 3827578.366 4134182.636 3985413.861 1.297195501 1.145024802 1.120011199 1.148641286 1.150821339 1.151466896 1.054792193 0.960396711 1.037328313 1 21.92629812 -6.857352831 2.775729215 0.998927586 1.16572822 0.719939916 0.048485465 0.150025268 2.332205119 0.023250361 0.014743086 1.39E-07 6.857352831 0.166800634 S(ph)PAFALK ddPTM_HeLa_A486_30min_R1 6 SPAFALK 7 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 S(1)PAFALK;S(1)PAFALK;S(1)PAFALK;S(1)PAFALK;S(1)PAFALK;S(1)PAFALK ;;;;; 107.57 0.0032517 4239617000 4972104 5274443 3233196 1823217 4490428 4835754 5587071 5266888 3832256 5055636 TRUE FALSE FALSE 4623585.186 4856476.927 4485176.079 4244541.316 3927196.649 4239167.838 4189126.742 4067732.578 4164439.036 3789671.839 1.22004896 1.281503289 1.183526244 1.120028725 1.036289372 1.118610797 1.105406199 1.073373303 1.098891728 1 21.8536415 -5.172837824 2.252292933 1.079977725 1.250111859 0.784296912 0.037221406 0.131668343 1.300640614 0.010444285 0.02161558 6.72E-06 5.172837824 0.170134134 S(ph)PAFRGPDR ddPTM_HeLa_A485_30min_R1 4 SPAFRGPDR 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(1)PAFRGPDR;S(1)PAFRGPDR;S(1)PAFRGPDR;S(1)PAFRGPDR ;;; 129.34 0.00012289 2249400000 447049 790350 752950 266320 783380 677406 583951 694740 673977 363757 TRUE FALSE FALSE 546493.5077 882774.5574 1031497.538 280868.3872 705383.9366 712873.9307 459185.0984 524353.9257 809238.0018 273079.0744 2.001228066 3.232670096 3.77728517 1.02852402 2.583075757 2.610503688 1.681509649 1.920154179 2.963383422 1 18.05895924 -9.871469885 0.163906284 9.08E-12 3.006403229 0.228812279 0.764945046 35.74842147 1.322556214 22.96091011 4.273825092 1.34E-10 9.871469885 3.006403229 S(ph)PAFRGPDR ddPTM_HeLa_A486_30min_R1 4 SPAFRGPDR 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(1)PAFRGPDR;S(1)PAFRGPDR;S(1)PAFRGPDR;S(1)PAFRGPDR ;;; 111.79 0.00041514 2098760000 561140 621770 540310 157408 631150 441875 538790 535560 475160 599150 TRUE FALSE FALSE 521806.9837 572498.6808 749532.502 366453.779 551985.2818 387360.9552 403979.0433 413624.6792 516347.2514 449118.9402 1.161845865 1.274715069 1.66889533 0.815939267 1.229040311 0.862490803 0.899492333 0.920969129 1.149689325 1 18.77673804 -5.275486412 24.93300243 0.98103567 1.359108411 0.524043323 0.168487334 582.6739107 1034225.169 0.046940033 0.070021393 5.30E-06 5.275486412 0.378072741 S(ph)PAFTSR ddPTM_HeLa_A485_30min_R1 3 SPAFTSR 7 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)PAFTSR;S(1)PAFTSR;S(1)PAFTSR ;; 115.69 0.0024811 684680000 320654 448900 400509 265646 489730 396137 406290 421881 359417 368840 TRUE FALSE FALSE 391982.3761 501394.9501 548673.9457 280157.5683 440970.7617 416878.1208 319482.8224 318414.0233 431548.6951 276894.976 1.415635566 1.810776625 1.981523658 1.011782779 1.592556023 1.50554599 1.153805053 1.149945109 1.558528441 1 18.07897935 -5.918233333 0.22229535 0.987070315 1.953752026 0.295436428 0.266906477 6.752728987 0.636814549 0.631866461 1.944606848 1.21E-06 5.918233333 0.966681711 S(ph)PAFTSR ddPTM_HeLa_A486_30min_R1 2 SPAFTSR 7 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)PAFTSR;S(1)PAFTSR ; 95.358 0.0056057 662040000 75764 91058 85610 22077 100180 65532 75342 84945 67812 64739 TRUE FALSE FALSE 70453.33485 83842.23245 118760.4847 51396.37171 87614.49026 57447.32812 56490.63471 65604.87784 73689.99876 48527.93302 1.451809926 1.727710769 2.447260316 1.059109023 1.80544451 1.183799197 1.164084914 1.351899283 1.518506851 1 15.56652779 -5.285522067 24.98373203 1.323073307 1.860805586 0.40590856 0.319273627 781.4848439 810721.9624 0.0891611 0.132323938 5.18E-06 5.285522067 0.537732279 S(ph)PAGGESATVAAK ddPTM_HeLa_A485_30min_R1 4 SPAGGESATVAAK 13 0 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 S(1)PAGGESATVAAK;S(1)PAGGESATVAAK;S(1)PAGGESATVAAK;S(1)PAGGESATVAAK ;;; 234.04 9.29E-35 722100000 774920 712990 620070 869920 797910 661750 801140 745450 682130 1125440 TRUE FALSE FALSE 947298.2806 796367.9783 849459.6963 917441.5268 718467.2788 696398.2067 629969.8943 562627.2187 819027.2341 844888.5202 1.121210974 0.942571664 1.00541039 1.085872875 0.850369323 0.824248632 0.745624871 0.665918882 0.96939089 1 19.68840147 -5.84976612 5.559060175 0.817085423 1.028993361 0.458515066 0.102390664 0.174882481 8.589240814 0.031410139 0.036000439 1.41E-06 5.84976612 0.211907938 S(ph)PAGGESATVAAK ddPTM_HeLa_A486_30min_R1 4 SPAGGESATVAAK 13 0 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 S(1)PAGGESATVAAK;S(1)PAGGESATVAAK;S(1)PAGGESATVAAK;S(1)PAGGESATVAAK ;;; 234.47 9.07E-35 1748200000 1059640 1171400 657840 310866 849010 1087630 1097100 999220 888410 1206130 TRUE FALSE FALSE 985364.708 1078573.998 912573.2656 723711.7583 742519.2491 953449.2688 822593.9761 771719.4188 965418.0941 904107.1974 1.089875969 1.192971365 1.009364009 0.800471183 0.821273463 1.054575466 0.909841198 0.853570706 1.067813747 1 19.78613431 -4.957720294 5.342937815 0.921897077 1.13686097 0.466032941 0.089584059 0.153346909 10.48458038 0.0238498 0.050340367 1.10E-05 4.957720294 0.214963892 S(ph)PAGS(ph)PELR ddPTM_HeLa_A485_30min_R1 1 SPAGSPELR 9 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 S(1)PAGS(1)PELR 58.476 0.014043 0 498080 533740 419570 648120 486770 480850 570630 509470 452600 717470 TRUE FALSE FALSE 608876.1776 596156.2501 574786.4028 683525.1545 438305.4696 506026.5625 448710.2389 384521.6837 543432.6685 538617.9331 1.130441711 1.106825847 1.067150511 1.269035271 0.813759518 0.939490744 0.83307705 0.713904347 1.008939055 1 19.03890274 -5.771819581 25 0.870699186 1.135309749 0.630406639 0.096522921 127.6780303 307502.8117 0.028979032 0.033211394 1.69E-06 5.771819581 0.264610563 S(ph)PAGS(ph)PELR ddPTM_HeLa_A486_30min_R1 1 SPAGSPELR 9 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 S(1)PAGS(1)PELR 83.182 0.01264 545130000 778670 803060 548590 241920 680420 736990 674870 650540 722050 808400 TRUE FALSE FALSE 724089.2541 739422.6009 761018.7397 563201.986 595075.3789 646067.667 506010.388 502426.2432 784637.8754 605971.3782 1.194923193 1.220226941 1.255865817 0.929420112 0.982018954 1.066168618 0.83504008 0.82912537 1.294843129 1 19.20889013 -5.258818385 24.7511811 0.980091739 1.223327493 0.42121984 0.124559759 186.1963933 1758320.383 0.033997576 0.055615994 5.51E-06 5.258818385 0.243235754 S(ph)PAKS(ph)PNPS(ph)TPR ddPTM_HeLa_A485_30min_R1 1 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 3 0 S(1)PAKS(1)PNPS(0.831)T(0.169)PR 113.52 0.00016445 0 344770 303740 216530 524290 433470 317820 437390 421150 237270 629570 TRUE FALSE FALSE 421462.8971 339259.7508 296633.4576 552930.6351 390312.2048 334460.5638 343938.0534 317862.3022 284887.9126 472629.7854 0.891740026 0.717812887 0.627623283 1.16990222 0.825830739 0.707658667 0.727711338 0.672539717 0.602771813 1 18.85035103 -6.218518082 6.328712616 0.720744868 0.845913746 0.086312442 0.163047734 0.500052964 54.71666899 0.055158878 0.054558106 6.05E-07 6.218518082 0.125168878 S(ph)PAKS(ph)PNPS(ph)TPR ddPTM_HeLa_A486_30min_R1 1 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 3 0 S(1)PAKS(1)PNPS(0.617)T(0.383)PR 88.551 0.0044857 371450000 655300 607030 311080 361440 535710 668690 813330 712540 413330 1025300 TRUE FALSE FALSE 609366.854 558926.732 431538.507 841450.5862 468516.2565 586193.8265 609826.2315 550310.1966 449157.7772 768558.2064 0.792870142 0.727240601 0.561490988 1.094843018 0.60960413 0.762718844 0.793467855 0.716029303 0.584416084 1 19.551795 S(ph)PAKS(ph)PNPST(ph)PR ddPTM_HeLa_A485_30min_R1 1 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 3 0 S(1)PAKS(0.998)PNPS(0.234)T(0.769)PR 77.39 0.0064378 419880000 186330 142630 112880 254040 223340 177820 250320 217660 139040 338470 TRUE FALSE FALSE 227778.4657 159309.3378 154639.0093 267917.5619 201103.4854 187130.3802 196837.0871 164278.5437 166944.0526 254095.6581 0.896428012 0.626965998 0.6085858 1.054396458 0.791447941 0.736456426 0.774657421 0.646522436 0.657012615 1 17.9550122 -10.12087421 4.164886125 1.00004943 0.753425053 0.240537367 0.130733297 83226805.46 101599054.6 52567.03658 0.033557993 7.57E-11 10.12087421 -0.246624376 S(ph)PAKS(ph)PNPST(ph)PR ddPTM_HeLa_A486_30min_R1 2 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 3 0 S(1)PAKS(1)PNPS(0.016)T(0.985)PR;S(1)PAKS(0.996)PNPS(0.027)T(0.977)PR ; 128.59 0.00056354 0 851980 873780 454900 497500 848650 901060 1170720 1094400 695380 1431770 TRUE FALSE FALSE 792260.6016 804538.4905 631049.4626 1158205.142 742204.4037 789896.3785 877793.4734 845229.0106 755656.0983 1073245.473 0.738191422 0.749631385 0.587982413 1.079161452 0.691551395 0.735988549 0.817886957 0.787544911 0.704085056 1 20.03354866 -10.84462075 2.745079127 1.086728086 0.768406402 0.254695351 0.120123443 67029307.64 49378746.83 38275704.74 0.029316041 1.43E-11 10.84462075 -0.318321684 S(ph)PAKSPNPSTPR ddPTM_HeLa_A485_30min_R1 5 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 S(1)PAKSPNPSTPR;S(1)PAKSPNPSTPR;S(1)PAKSPNPSTPR;S(0.995)PAKS(0.005)PNPSTPR;S(0.997)PAKS(0.003)PNPSTPR ;;;; 165.58 1.11E-10 8677690000 2733200 3084670 2058630 2686170 3377320 3399470 4528690 4730720 2549560 4037550 TRUE FALSE FALSE 3341190.911 3445395.323 2820202.904 2832908.665 3041062.162 3577460.993 3561098.386 3570503.503 3061233.306 3031063.091 1.102316518 1.136695351 0.930433587 0.934625437 1.003298866 1.180266093 1.174867787 1.177970697 1.009953675 1 21.53139245 -6.246577567 24.32852168 1.123875828 1.017992417 0.195516887 0.085477028 836.7779071 1369789.775 0.029932018 0.029802687 5.67E-07 6.246577567 -0.105883411 S(ph)PAKSPNPSTPR ddPTM_HeLa_A486_30min_R1 4 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 S(1)PAKSPNPSTPR;S(1)PAKSPNPSTPR;S(0.997)PAKS(0.003)PNPSTPR;S(1)PAKSPNPSTPR ;;; 150.19 6.27E-08 4028100000 2611070 2126090 1191162 1063167 2093000 1991200 2703380 2518060 1557460 3477850 TRUE FALSE FALSE 2428047.477 1957610.885 1652411.827 2475106.505 1830476.424 1745545.989 2026965.731 1944752.707 1692461.887 2606973.723 0.931366302 0.750913163 0.633842916 0.949417512 0.702146097 0.669567926 0.777516748 0.745980939 0.64920558 1 21.31394461 -10.37883298 3.768470612 1.00111891 0.754684025 0.335499226 0.102704583 48137845.34 276292.863 467016.7696 0.024300426 4.18E-11 10.37883298 -0.246434885 S(ph)PALKS(ph)PLQSVVVR ddPTM_HeLa_A485_30min_R1 3 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PALKS(0.991)PLQS(0.009)VVVR;S(1)PALKS(0.998)PLQS(0.002)VVVR;S(1)PALKS(1)PLQSVVVR ;; 149.94 6.50E-08 682375000 693970 518387 434790 1018730 757980 572022 818280 730000 535882 1199600 TRUE FALSE FALSE 848341.2323 579007.8503 595636.9141 1074380.64 682512.8498 601972.1874 643447.7933 550966.3554 643428.602 900561.797 0.942013347 0.64294072 0.661405931 1.193011567 0.757874531 0.668440733 0.714495991 0.61180294 0.71447468 1 19.78046575 -5.986793398 24.99087515 0.715569773 0.848334161 0.086164056 0.172800041 536.8017121 1015784.887 0.054105724 0.061317367 1.03E-06 5.986793398 0.132764389 S(ph)PALKS(ph)PLQSVVVR ddPTM_HeLa_A486_30min_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PALKS(1)PLQSVVVR;S(1)PALKS(0.849)PLQS(0.151)VVVR ; 132.52 1.77E-05 671720000 1158570 1481730 691910 610900 1081070 1435340 1639950 1465280 1101470 1712920 TRUE FALSE FALSE 1077360.226 1364312.318 959836.082 1422206.073 945472.12 1258262.344 1229617.164 1131667.731 1196946.306 1283993.683 0.839069725 1.062553762 0.747539567 1.107642578 0.736352626 0.979959918 0.957650478 0.881365497 0.93220576 1 20.29220667 -8.030888105 20.94758935 1.000000006 0.916927269 0.047475686 0.114820177 1472.266137 998460.5769 0.099828542 0.025775596 9.31E-09 8.030888105 -0.083072737 S(ph)PALKSPLQSVVVR ddPTM_HeLa_A485_30min_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(1)PALKSPLQSVVVR;S(1)PALKSPLQSVVVR ; 161.22 3.93E-12 7124900000 1413880 1691050 1267740 1381590 1798700 1760220 2254900 2398200 1413600 1794400 TRUE FALSE FALSE 1728392.728 1888803.587 1736729.781 1457062.763 1619615.112 1852382.397 1773122.194 1810037.69 1697296.554 1347089.103 1.283057463 1.402137084 1.289246403 1.081638 1.202307337 1.375100127 1.316261997 1.343665898 1.259973486 1 20.36141385 -8.046119645 21.68757224 0.999999999 1.285955418 0.495309323 0.086287765 1924.303749 904895.746 0.091740936 0.023687408 8.99E-09 8.046119645 0.285955419 S(ph)PALKSPLQSVVVR ddPTM_HeLa_A486_30min_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(1)PALKSPLQSVVVR;S(1)PALKSPLQSVVVR ; 175.16 7.47E-13 7284900000 3564300 4117900 2496550 1414090 4177700 3550200 4504500 4327800 3047820 5106300 TRUE FALSE FALSE 3314460.976 3791582.607 3463281.02 3292072.984 3653693.91 3112212.42 3377426.456 3342454.415 3312007.492 3827649.244 0.865925994 0.99057734 0.904806266 0.860076975 0.954552959 0.813087151 0.882376164 0.873239475 0.865285004 1 21.8680272 -4.992964685 24.98589104 0.885922773 0.933111704 0.048075375 0.056667742 377.4002848 1340307.733 0.013804672 0.028639007 1.02E-05 4.992964685 0.047188932 S(ph)PALPPVWDVSASAK ddPTM_HeLa_A485_30min_R1 2 SPALPPVWDVSASAK 15 0 G3V471;P56179;P56179-2;P56179-3 G3V471 DLX6 Homeobox protein DLX-6 1 0 S(1)PALPPVWDVSASAK;S(1)PALPPVWDVSASAK ; 170.77 3.18E-12 232660000 280820 261590 188254 312110 303180 334450 431400 430610 233930 399570 TRUE FALSE FALSE 343287.4402 292180.675 257896.9885 329159.779 272994.3347 351961.2848 339227.8658 325002.2223 280877.6053 299964.5525 1.144426691 0.974050675 0.859758216 1.097328922 0.91008865 1.173342923 1.130893177 1.083468762 0.936369324 1 18.1944325 -6.254646532 24.94837281 1.074161531 0.993783188 0.102086096 0.098183864 1135.94524 4172032.907 0.032849206 0.032206281 5.56E-07 6.254646532 -0.080378343 S(ph)PALPPVWDVSASAK ddPTM_HeLa_A486_30min_R1 2 SPALPPVWDVSASAK 15 0 G3V471;P56179;P56179-2;P56179-3 G3V471 DLX6 Homeobox protein DLX-6 1 0 S(1)PALPPVWDVSASAK;S(1)PALPPVWDVSASAK ; 226.39 8.25E-34 218960000 352620 400210 225360 127041 358780 369830 406280 372670 307170 448580 TRUE FALSE FALSE 327903.1589 368495.9021 312625.4274 295757.8683 313778.4669 324204.1348 304624.4468 287821.1763 333795.7429 336252.6482 0.975169001 1.095889962 0.929733725 0.879570376 0.933162812 0.964168272 0.905939175 0.855967017 0.992693276 1 18.3591861 -4.78855374 21.49952026 0.925803746 1.035529068 0.387094609 0.051202345 35.08000665 27815.71822 0.012765191 0.026598324 1.63E-05 4.78855374 0.109725322 S(ph)PALSDANK ddPTM_HeLa_A485_30min_R1 4 SPALSDANK 9 0 A0A087WWJ1;P52701-2;P52701;P52701-3;F8WAX8;F8W7G9 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 S(1)PALSDANK;S(1)PALSDANK;S(1)PALSDANK;S(1)PALSDANK ;;; 136.5 0.00017596 2433850000 3356420 2955840 2036240 4299060 3281160 3023860 4070040 3505010 2682590 5484830 TRUE FALSE FALSE 4103044.049 3301499.776 2789529.911 4533906.762 2954476.19 3182184.634 3200442.705 2645400.802 3220961.207 4117562.822 0.99647394 0.801809206 0.677471124 1.101114168 0.717530325 0.772832078 0.777266272 0.642467624 0.782249439 1 21.97335923 S(ph)PALSDANK ddPTM_HeLa_A486_30min_R1 6 SPALSDANK 9 0 A0A087WWJ1;P52701-2;P52701;P52701-3;F8WAX8;F8W7G9 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 S(1)PALSDANK;S(1)PALSDANK;S(1)PALSDANK;S(1)PALSDANK;S(1)PALSDANK;S(0.999)PALS(0.001)DANK ;;;;; 150.04 7.22E-05 4049970000 5417750 5756880 2711770 1979630 4182240 5451570 6311710 5707080 4238100 7011730 TRUE FALSE FALSE 5037993.702 5300683.863 3761839.968 4608678.685 3657664.461 4779010.721 4732453.4 4407702.469 4605461.92 5255947.169 0.958532029 1.008511633 0.715730171 0.876850268 0.69590967 0.909257754 0.900399728 0.8386124 0.876238244 1 22.32551934 -9.20864836 12.74212479 1 0.861335215 0.162985029 0.091910994 0 0 0.090506949 0.02195116 6.19E-10 9.20864836 -0.138664785 S(ph)PAMSR ddPTM_HeLa_A485_30min_R1 5 SPAMSR 6 0 Q9BQI6 Q9BQI6 ANKRD32 Ankyrin repeat domain-containing protein 32 1 0 S(1)PAMSR;S(1)PAMSR;S(1)PAMSR;S(1)PAMSR;S(1)PAMSR ;;;; 105.81 0.010139 3239690000 434730 439173 231504 465546 221839 594204 323744 447219 440762 499969 TRUE FALSE FALSE 531434.1887 490530.4621 317146.9633 490977.5992 199751.9302 625315.6026 254573.4497 337537.839 529218.8905 375335.9295 1.415889466 1.306910486 0.844968303 1.308101784 0.532195067 1.666015836 0.678254943 0.899295304 1.409987291 1 18.51782288 -4.599666693 6.687498634 1.039867291 1.389593881 0.137793138 0.324007831 0.346714511 23.79639006 0.07734991 0.209460599 2.51E-05 4.599666693 0.34972659 S(ph)PAMSR ddPTM_HeLa_A486_30min_R1 3 SPAMSR 6 0 Q9BQI6 Q9BQI6 ANKRD32 Ankyrin repeat domain-containing protein 32 1 0 S(1)PAMSR;S(1)PAMSR;S(1)PAMSR ;; 91.064 0.013914 932200000 336535 167214 334232 81414 157855 480350 187534 188055 503620 402003 TRUE FALSE FALSE 312945.6344 153963.3537 463655.5814 189535.9064 138055.354 421089.3008 140611.0097 145238.9817 547274.1871 301338.8322 1.038517446 0.510931009 1.538651949 0.628979362 0.458139938 1.397394746 0.466620942 0.481978976 1.816142258 1 18.20102707 -7.757218478 24.99994342 1.408071107 0.81881205 0.245041671 0.416251076 136.5224903 808646.3842 0.293666519 0.102099467 1.75E-08 7.757218478 -0.589259057 S(ph)PAPAQTR ddPTM_HeLa_A485_30min_R1 1 SPAPAQTR 8 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 S(1)PAPAQTR 68.485 0.017963 224180000 53159 87757 82601 44461 63234 80062 62843 75841 58423 48062 TRUE FALSE FALSE 64984.03615 98019.41777 113158.5472 46889.79185 56938.20093 84253.92252 49416.07967 57240.87584 70147.96021 36081.02792 1.801058338 2.716647042 3.13623402 1.29956918 1.578064823 2.335130881 1.369586249 1.586453578 1.944178541 1 15.13895282 -5.449145846 0.147969269 0.712277441 3.493227686 0.320682458 0.52417532 19.5187445 0.806782446 3.60714426 12.11325851 3.56E-06 5.449145846 2.780950246 S(ph)PAPAQTR ddPTM_HeLa_A486_30min_R1 1 SPAPAQTR 8 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 S(1)PAPAQTR 60.754 0.032657 151520000 59195 61329 88223 16226 87435 68794 51852 51073 83883 52962 TRUE FALSE FALSE 55045.73618 56469.06668 122385.3083 37774.94802 76468.087 60306.89573 38878.08117 39444.79282 91154.04598 39699.97048 1.386543504 1.422395685 3.08275565 0.951510733 1.92614972 1.519066513 0.979297483 0.993572346 2.296073395 1 15.27685031 -6.520547083 24.17519647 1.307054699 1.760497251 0.096767525 0.629488508 149.970891 1554985.278 0.234680502 0.185110969 3.02E-07 6.520547083 0.453442552 S(ph)PAPGLASGDRPPSVSSVHSEGDCNR ddPTM_HeLa_A485_30min_R1 1 SPAPGLASGDRPPSVSSVHSEGDCNR 26 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(1)PAPGLASGDRPPSVSSVHSEGDCNR 128.01 4.65E-06 709150000 142580 195880 200510 117170 264310 147210 202610 177630 196260 206580 TRUE FALSE FALSE 174296.4291 218786.4621 274686.9929 123570.7004 237994.3684 154917.688 159320.7183 134065.964 235647.5818 155083.4078 1.12388831 1.410766407 1.771221027 0.796801554 1.534621735 0.998931415 1.027322784 0.864476515 1.519489319 1 17.24268482 -5.264112479 24.99745659 1.110428445 1.43283935 0.233285856 0.273513756 349.5528482 3268850.544 0.074199039 0.115957949 5.44E-06 5.264112479 0.322410905 S(ph)PAPGLASGDRPPSVSSVHSEGDCNRR ddPTM_HeLa_A485_30min_R1 2 SPAPGLASGDRPPSVSSVHSEGDCNRR 27 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.999)PAPGLAS(0.001)GDRPPSVSSVHSEGDCNRR;S(0.96)PAPGLAS(0.039)GDRPPSVSSVHSEGDCNRR ; 115.3 0.00010589 1855420000 36575 44162 26783 25726 55315 36561 46494 46433 50014 44853 TRUE FALSE FALSE 44710.98257 49326.36174 36691.14623 27131.34624 49807.64438 38475.27743 36560.17708 35045.23395 60051.35104 33671.97256 1.327839719 1.464908587 1.089664295 0.805754584 1.479201858 1.14264994 1.085774735 1.040783515 1.783422428 1 15.03926062 S(ph)PAPGLASGDRPPSVSSVHSEGDCNRR ddPTM_HeLa_A486_30min_R1 2 SPAPGLASGDRPPSVSSVHSEGDCNRR 27 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C2R5;H7BZU2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.783)PAPGLAS(0.209)GDRPPS(0.004)VS(0.002)S(0.002)VHS(0.001)EGDCNRR;S(0.995)PAPGLAS(0.005)GDRPPSVSSVHSEGDCNRR ; 102.39 0.00043982 1424300000 51114 49087 30017.8 7922 60380 48588 50438 35254 39222 39551 TRUE FALSE FALSE 47531.17255 45197.16735 41641.49606 18442.81636 52806.57738 42593.70657 37817.87892 27227.43379 42621.79454 29647.17217 1.603227866 1.524501801 1.404568902 0.622076745 1.781167427 1.436686991 1.275598182 0.918382152 1.437634399 1 14.85560688 -5.005153522 24.30671236 1.225119957 1.539032708 0.182266634 0.302393815 292.8305636 1381180.622 0.08033469 0.159816565 9.88E-06 5.005153522 0.313912752 S(ph)PAPGYKR ddPTM_HeLa_A485_30min_R1 1 SPAPGYKR 8 1 C9JG35;C9J092;C9JCJ0;Q96K58;Q96K58-2 C9JG35 ZNF668 Zinc finger protein 668 1 0 S(1)PAPGYKR 61.78 0.017909 65407000 87597 100890 88398 85432 127160 112110 138200 168570 104890 148660 TRUE FALSE FALSE 107082.6504 112688.2079 121100.0987 90098.93383 114499.5039 117979.9062 108672.441 127227.9432 125940.4609 111601.7979 0.9595065 1.0097347 1.085108852 0.807325111 1.025964689 1.057150588 0.973751705 1.140016968 1.128480574 1 16.76800074 -7.25404309 24.82105983 1.100686579 0.990035012 0.25298342 0.078904864 647.8394889 2174080.926 0.037995728 0.021339203 5.57E-08 7.25404309 -0.110651567 S(ph)PAPPADKEAEKPVFFPAFAAEAQK ddPTM_HeLa_A486_30min_R1 1 SPAPPADKEAEKPVFFPAFAAEAQK 25 2 C9J0Q5;C9JE98;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 1 0 S(1)PAPPADKEAEKPVFFPAFAAEAQK 146.58 1.95E-09 276360000 150230 233590 83746 138930 168980 315430 334590 291990 166030 292740 TRUE FALSE FALSE 139699.6528 215079.4777 116174.694 323436.0611 147784.9527 276515.4537 250872.0431 225510.2511 180421.6141 219435.9986 0.636630515 0.980146736 0.529424045 1.473942577 0.673476338 1.260118921 1.143258375 1.027681203 0.822206089 1 17.74344069 -5.233743589 24.99819896 1.05444117 0.741875109 0.30979957 0.232788743 943.9403971 851998.8255 0.059465502 0.102967059 5.84E-06 5.233743589 -0.312566061 S(ph)PAPPKPR ddPTM_HeLa_A485_30min_R1 2 SPAPPKPR 8 1 Q9NZ20 Q9NZ20 PLA2G3 Group 3 secretory phospholipase A2 1 0 S(1)PAPPKPR;S(1)PAPPKPR ; 77.677 0.0023783 507310000 550080 633490 527480 701120 799630 657780 976120 939490 566980 940550 TRUE FALSE FALSE 672443.3982 707571.1449 722616.8023 739420.4103 720016.0295 692220.3437 767563.9878 709078.6044 680767.6854 706088.1945 0.952350434 1.002100234 1.023408701 1.047206873 1.019725347 0.980359605 1.087065318 1.004235179 0.964139736 1 19.42948887 -4.300093013 2.780868949 1.018339857 0.943124271 0.252293254 0.032424477 0.526910543 5.920799158 0.00841963 0.086547681 5.01E-05 4.300093013 -0.075215586 S(ph)PAPPKPR ddPTM_HeLa_A486_30min_R1 2 SPAPPKPR 8 1 Q9NZ20 Q9NZ20 PLA2G3 Group 3 secretory phospholipase A2 1 0 S(1)PAPPKPR;S(1)PAPPKPR ; 59.908 0.0069206 716200000 836630 848430 461870 366740 775160 917260 1010190 966380 680460 1089920 TRUE FALSE FALSE 777986.5574 781197.3169 640718.4333 853789.254 677932.2047 804097.7872 757429.7773 746356.3699 739442.8207 816996.9378 0.952251497 0.95618145 0.784236028 1.045033604 0.82978549 0.984211507 0.927090106 0.913536313 0.905074164 1 19.63997115 S(ph)PAPPLLHVAALGQK ddPTM_HeLa_A485_30min_R1 2 SPAPPLLHVAALGQK 15 0 Q8N163-2;Q8N163;H0YC69;E5RGU7;E5RFJ3;H0YC58 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 S(1)PAPPLLHVAALGQK;S(1)PAPPLLHVAALGQK ; 155.22 1.91E-08 181285000 323090 263880 216169 337970 310430 271050 301810 282710 260480 430240 TRUE FALSE FALSE 394960.2559 294738.4705 296138.9086 356432.4453 279522.4992 285241.7589 237325.8279 213374.9292 312755.9467 322989.086 1.222828489 0.912533839 0.916869707 1.103543311 0.865423977 0.883131261 0.734779713 0.660625818 0.968317384 1 18.30112589 -5.896068295 5.581794558 0.826500291 1.020521375 0.333045625 0.126426003 0.242898849 11.20518517 0.039522177 0.045058845 1.27E-06 5.896068295 0.194021084 S(ph)PAPPLLHVAALGQK ddPTM_HeLa_A486_30min_R1 2 SPAPPLLHVAALGQK 15 0 Q8N163-2;Q8N163;H0YC69;E5RGU7;E5RFJ3;H0YC58 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 S(1)PAPPLLHVAALGQK;S(1)PAPPLLHVAALGQK ; 212.69 3.69E-26 333390000 637380 701740 398770 221588 512030 674100 644320 606150 518330 770530 TRUE FALSE FALSE 592702.9534 646131.5667 553184.4234 515868.0624 447806.4229 590936.3957 483104.3211 468142.8772 563259.2617 577584.2727 1.026175714 1.118679295 0.957755343 0.893147696 0.775309239 1.023117186 0.836422223 0.81051874 0.975198405 1 19.13967193 -4.953900028 3.914228236 0.892484072 1.071293398 0.411026367 0.079829337 0.186657636 6.054461452 0.020848778 0.045667579 1.11E-05 4.953900028 0.178809326 S(ph)PAPRPPR ddPTM_HeLa_A485_30min_R1 4 SPAPRPPR 8 1 F8VP90;P50281 F8VP90 MMP14 Matrix metalloproteinase-14 1 0 S(1)PAPRPPR;S(1)PAPRPPR;S(1)PAPRPPR;S(1)PAPRPPR ;;; 75.378 0.0060107 513774000 213651 265951 269230 251245 288465 260199 303585 283103 264729 319233 TRUE FALSE FALSE 261176.9279 297051.656 368829.3806 264969.8782 259744.4117 273822.6173 238721.5847 213671.5454 317857.6821 239654.0881 1.089807939 1.239501726 1.539007256 1.10563471 1.083830506 1.142574364 0.996108961 0.891583144 1.326318631 1 17.87059402 -5.493837724 24.65845983 1.070044438 1.290757916 0.302849929 0.147642827 710.7840097 603519.7133 0.041477113 0.061384823 3.21E-06 5.493837724 0.220713478 S(ph)PAPRPPR ddPTM_HeLa_A486_30min_R1 3 SPAPRPPR 8 1 F8VP90;P50281 F8VP90 MMP14 Matrix metalloproteinase-14 1 0 S(1)PAPRPPR;S(1)PAPRPPR;S(1)PAPRPPR ;; 73.985 0.0066779 521892000 117208 115151 107689 40979.2 133078 118584 124804 116893 111244 123226 TRUE FALSE FALSE 108992.3245 106026.0154 149389.0648 95401.64857 116386.1163 103954.3118 93576.71916 90279.01566 120886.7195 92369.40753 1.179961281 1.147847737 1.617300238 1.03282733 1.260007176 1.125419276 1.013070471 0.977369219 1.308731134 1 16.49512749 -6.035510807 1.395427059 1.075430769 1.275838874 0.197650305 0.164999049 0.675213862 2.697292683 0.069545679 0.075813073 9.21E-07 6.035510807 0.200408104 S(ph)PAQILISLESEER ddPTM_HeLa_A485_30min_R1 4 SPAQILISLESEER 14 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532 A0A5H1ZRP9 DMD Dystrophin 1 0 S(1)PAQILISLESEER;S(1)PAQILISLESEER;S(1)PAQILISLESEER;S(1)PAQILISLESEER ;;; 250.38 4.66E-36 254067000 33089.8 48830.8 35926.8 32006.6 34765.9 37018.7 37780 37154.3 26870 39531.1 TRUE FALSE FALSE 40450.51185 54541.13729 49217.61836 33755.03951 31304.48493 38956.94189 29707.99437 28042.14967 32262.56253 29676.72429 1.363038301 1.837842235 1.658458591 1.13742471 1.054849741 1.312710308 1.00105369 0.944920652 1.087133547 1 14.85704424 -5.291823512 5.007403118 1.076594616 1.644322056 0.752675898 0.142660198 0.088807497 6.084015022 0.040466784 0.063411063 5.11E-06 5.291823512 0.56772744 S(ph)PAQILISLESEER ddPTM_HeLa_A486_30min_R1 4 SPAQILISLESEER 14 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532 A0A5H1ZRP9 DMD Dystrophin 1 0 S(1)PAQILISLESEER;S(1)PAQILISLESEER;S(1)PAQILISLESEER;S(1)PAQILISLESEER ;;; 241.68 2.42E-35 172150000 49390 47346 34470.8 13601.8 41973 39332.8 38808.8 33629.4 36606.8 51305 TRUE FALSE FALSE 45928.01605 43594.13053 47818.81692 31665.6778 36708.35496 34480.31904 29098.42776 25972.71974 39779.9069 38457.89406 1.194241577 1.133554803 1.243407058 0.823385642 0.954507673 0.896573249 0.756630816 0.675354706 1.034375591 1 15.23099214 -5.26352948 24.99764928 0.862731221 1.184716522 0.646076073 0.105802118 111.1223406 1329029.619 0.029701168 0.046617397 5.45E-06 5.26352948 0.3219853 S(ph)PAQILISLESEERGELER ddPTM_HeLa_A485_30min_R1 1 SPAQILISLESEERGELER 19 1 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532 A0A5H1ZRP9 DMD Dystrophin 1 0 S(1)PAQILISLESEERGELER 101.05 9.92E-05 20476000 1072.5 1963 2206.3 2697.5 7186 1838 3780.2 3141.5 2110 3406.9 TRUE FALSE FALSE 1311.073925 2192.555774 3022.502182 2844.857595 6470.536608 1934.234838 2972.529389 2371.042199 2533.457646 2557.622529 0.512614317 0.857263239 1.181762417 1.112305495 2.529902882 0.756262824 1.162223649 0.927049309 0.990551818 1 11.32058764 -3.075665021 12.70493257 1.128238269 1.025008207 0 0.513381246 0 0 0.120410637 0 0.000840108 3.075665021 -0.103230061 S(ph)PAQILISLESEERGELER ddPTM_HeLa_A486_30min_R1 1 SPAQILISLESEERGELER 19 1 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532 A0A5H1ZRP9 DMD Dystrophin 1 0 S(1)PAQILISLESEERGELER 60.991 0.0018534 0 1036.9 1506.9 2988.8 2057.6 5470.3 2925.3 4033.9 3028.1 2406.8 2022.4 TRUE FALSE FALSE 964.2186646 1387.487756 4146.143403 4790.196785 4784.163965 2564.406228 3024.575554 2338.667733 2615.423362 1515.977876 0.636037425 0.915242747 2.734963001 3.159806525 3.155827034 1.691585523 1.995131724 1.542679329 1.725238476 1 10.56603298 -7.83540385 1.017478977 1.056664265 2.109124669 0.128257116 0.804788391 1.145289748 2.587233308 0.859829128 0.29286485 1.46E-08 7.83540385 1.052460404 S(ph)PAQQEPPQR ddPTM_HeLa_A486_30min_R1 1 SPAQQEPPQR 10 0 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 S(1)PAQQEPPQR 79.986 0.0043559 0 163880 186260 170490 85203 208100 204930 212980 208200 174740 214350 TRUE FALSE FALSE 152392.8583 171500.0793 236508.2939 198356.8899 181998.1575 179647.8202 159690.1513 160797.405 189886.6039 160675.3648 0.94845192 1.067370094 1.471963634 1.234519618 1.132707293 1.118079429 0.993868298 1.000759545 1.181802849 1 17.29378922 -6.330834986 2.322323535 1.046264683 1.189619524 0.157047706 0.135388087 0.584372798 6.186050259 0.057852881 0.050984485 4.67E-07 6.330834986 0.143354841 S(ph)PAQSDSTTQR ddPTM_HeLa_A485_30min_R1 1 SPAQSDSTTQR 11 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(1)PAQSDSTTQR 67.519 0.015193 73536000 22873 21237 17461 26195 17464 22492 19162 20186 19797 28872 TRUE FALSE FALSE 27961.01994 23720.48241 23920.55051 27625.96652 15725.22284 23669.64634 15067.88216 15235.35185 23770.07631 21674.74175 1.290027824 1.094383623 1.103614096 1.274569581 0.725509121 1.092038217 0.695181624 0.702908114 1.09667172 1 14.40372718 -5.755851173 24.99996291 0.871352712 1.177555956 0.48965791 0.152035463 117.1810076 524229.8181 0.044463898 0.055786149 1.75E-06 5.755851173 0.306203244 S(ph)PAQSDSTTQRR ddPTM_HeLa_A485_30min_R1 1 SPAQSDSTTQRR 12 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.999)PAQSDSTTQRR 61.649 0.015581 227030000 24968 44854 47297 32733 54902 33874 37422 53887 33378 33778 TRUE FALSE FALSE 30522.04546 50099.28512 64794.12849 34521.12091 49435.76411 35647.59026 29426.48399 40671.12876 40076.65844 25357.76624 1.203656709 1.975697885 2.555198588 1.36136285 1.949531502 1.405785901 1.16045253 1.603892408 1.580449085 1 14.63014004 -6.276873301 18.31825793 1.376003123 1.834921903 0.263012473 0.381702083 36.2376226 43007.35441 0.135132726 0.120220504 5.29E-07 6.276873301 0.45891878 S(ph)PARPATER ddPTM_HeLa_A485_30min_R1 2 SPARPATER 9 1 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 0 S(1)PARPATER;S(1)PARPATER ; 88.338 0.0010501 0 55076 79261 76297 44659 69995 70451 56893 69078 72456 73391 TRUE FALSE FALSE 67327.46619 88529.88447 104522.4353 47098.60809 63026.05203 74139.70542 44737.34578 52136.51219 86997.25459 55095.97436 1.222003367 1.606830363 1.897097501 0.854846631 1.143932071 1.345646507 0.811989375 0.946285328 1.579012906 1 15.74965929 -5.267096261 24.99975912 1.095541324 1.578462407 0.407350244 0.264154585 448.3044637 1981216.813 0.074188057 0.113552769 5.41E-06 5.267096261 0.482921083 S(ph)PARPATER ddPTM_HeLa_A486_30min_R1 2 SPARPATER 9 1 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 0 S(1)PARPATER;S(1)PARPATER ; 84.479 0.0025214 773740000 80976 100181 103019 30681.1 122255 76288 84142 75825 97558 70909 TRUE FALSE FALSE 75300.00056 92242.29271 142910.7157 71427.15134 106920.6379 66876.3622 63088.78164 58561.30275 106014.406 53152.92486 1.416667112 1.735413299 2.688670776 1.343804721 2.011566404 1.258187811 1.186929634 1.101751275 1.994516883 1 15.69786146 -6.268648423 24.50390871 1.307052326 1.85312532 0.27965392 0.425776185 582.9946756 1981622.06 0.147170382 0.132513783 5.39E-07 6.268648423 0.546072994 S(ph)PART(ph)PPASLYHGYLPENGVLRPEPTK ddPTM_HeLa_A485_30min_R1 2 SPARTPPASLYHGYLPENGVLRPEPTK 27 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 S(0.999)PART(0.913)PPAS(0.079)LY(0.009)HGYLPENGVLRPEPTK;S(0.816)PART(0.857)PPAS(0.315)LY(0.011)HGYLPENGVLRPEPTK ; 109.71 0.0020839 663640000 327840 291830 273090 270039 457320 233019 323670 212100 398790 488970 TRUE FALSE FALSE 400766.877 325956.9799 374117.3552 284790.5468 411787.6151 245219.5145 254515.2604 160082.1424 478823.4951 367078.7778 1.091773486 0.887975551 1.019174569 0.775829506 1.121796301 0.668029669 0.693353241 0.436097514 1.304416174 1 18.48573018 -6.270445542 24.9035063 0.77719629 0.965145995 0.087886381 0.234133862 1304.598581 3607417.061 0.078773375 0.070467255 5.36E-07 6.270445542 0.187949704 S(ph)PART(ph)PPASLYHGYLPENGVLRPEPTK ddPTM_HeLa_A486_30min_R1 3 SPARTPPASLYHGYLPENGVLRPEPTK 27 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 S(0.998)PART(0.95)PPAS(0.036)LY(0.015)HGY(0.002)LPENGVLRPEPTK;S(1)PART(0.981)PPAS(0.019)LYHGYLPENGVLRPEPTK;S(0.999)PART(0.926)PPAS(0.075)LY(0.001)HGYLPENGVLRPEPTK ;; 155.25 9.58E-09 861375000 1030285 1303369 847050 159353 994749 1071803 1139504 1088219 1104123 659621 TRUE FALSE FALSE 958067.3419 1200085.294 1175050.445 370981.8373 869978.3048 939574.8432 854388.0468 840455.2894 1199829.271 494447.6082 1.937651889 2.427123266 2.376491311 0.750295544 1.759495425 1.900251569 1.727964768 1.699786338 2.42660547 1 18.91545814 S(ph)PASCHEHPMADDPSK ddPTM_HeLa_A485_30min_R1 3 SPASCHEHPMADDPSK 16 0 Q9BXB5;Q9BXB5-2;A0A5F9ZH75;H7C487 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10;Oxysterol-binding protein 1 0 S(0.985)PAS(0.015)CHEHPMADDPSK;S(0.985)PAS(0.015)CHEHPMADDPSK;S(0.998)PAS(0.002)CHEHPMADDPSK ;; 178.51 9.53E-18 1017470000 413540 455970 409570 240454 579010 369960 502090 421300 430370 535660 TRUE FALSE FALSE 505530.5463 509291.7251 561086.9866 253589.3932 521361.7314 389330.5335 394814.3698 317975.5144 516741.3114 402129.8201 1.2571327 1.266485845 1.395288185 0.630615738 1.296501044 0.968171257 0.981808237 0.790728512 1.285011172 1 18.6173018 -5.212509714 24.99996315 0.99565425 1.302320715 0.362071439 0.19037309 410.8284269 209906.6436 0.048719525 0.084384501 6.13E-06 5.212509714 0.306666465 S(ph)PASCHEHPMADDPSK ddPTM_HeLa_A486_30min_R1 3 SPASCHEHPMADDPSK 16 0 Q9BXB5;Q9BXB5-2;A0A5F9ZH75;H7C487 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10;Oxysterol-binding protein 1 0 S(0.998)PAS(0.002)CHEHPMADDPSK;S(0.997)PAS(0.003)CHEHPMADDPSK;S(0.953)PAS(0.047)CHEHPMADDPSK ;; 220.34 6.76E-34 1072340000 892950 1006790 630870 69026 893610 758270 881940 776170 858530 444982 TRUE FALSE FALSE 830358.8162 927008.2937 875159.7593 160696.0164 781525.1012 664722.3569 661269.2838 599453.0347 932948.0717 333555.6109 2.489416425 2.779171639 2.623729689 0.481766791 2.343012906 1.992838181 1.982485865 1.797160699 2.796979098 1 18.34756778 -5.058596553 24.99994318 1.823220003 2.651099976 0.287955996 0.615868353 323.6720743 138092.5803 0.162064881 0.280705542 8.74E-06 5.058596553 0.827879973 S(ph)PASEAACSK ddPTM_HeLa_A486_30min_R1 1 SPASEAACSK 10 0 O95197-7;O95197-2;O95197 O95197-7 RTN3 Reticulon-3 1 0 S(0.998)PAS(0.002)EAACSK 94.402 0.0009948 0 148400 146620 83845 37889 117670 145820 153850 134710 126060 154370 TRUE FALSE FALSE 137997.9263 135001.2972 116312.0294 88207.5068 102910.7314 127830.211 115355.1027 104039.4737 136986.9823 115714.7472 1.192569916 1.166673224 1.005161678 0.762284056 0.889348452 1.104701121 0.996891974 0.899102977 1.183833397 1 16.82021321 -4.780646284 4.463449386 0.968874851 1.184810249 0.346301854 0.109841185 0.203748901 9.570623199 0.030009774 0.073620362 1.66E-05 4.780646284 0.215935398 S(ph)PASIDR ddPTM_HeLa_A485_30min_R1 2 SPASIDR 7 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(1)PASIDR;S(1)PASIDR ; 128 0.0017146 1592030000 462940 676590 638330 470730 664040 676010 750870 818840 535450 682240 TRUE FALSE FALSE 565919.4059 755711.3149 874474.8301 496444.7879 597925.846 711404.8383 590440.4905 618018.2061 642909.9036 512170.1237 1.104944197 1.475508391 1.707391333 0.969296656 1.167436011 1.389001047 1.152821032 1.206665867 1.255266314 1 18.96626357 -13.99371324 0.075177404 0.028435475 1.591729717 0.166204747 0.195709146 495.9446748 2.65969435 80.66239871 8.652586552 1.01E-14 13.99371324 1.563294242 S(ph)PASIDR ddPTM_HeLa_A486_30min_R1 1 SPASIDR 7 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(1)PASIDR 128.57 0.0017055 823880000 319170 380870 367380 107360 490520 368270 373050 412160 351120 407350 TRUE FALSE FALSE 296797.8312 350688.4741 509639.3748 249939.5057 428994.4077 322836.5917 279708.9443 318320.1654 381555.3643 305346.9086 0.972002083 1.148491975 1.669050383 0.818542774 1.404941054 1.057278075 0.916036601 1.042486943 1.249579916 1 18.22008971 -6.478197056 24.88760274 1.045722103 1.206869497 0.096254734 0.228623951 1013.985329 564788.0378 0.079151257 0.069801015 3.33E-07 6.478197056 0.161147394 S(ph)PASKLDK ddPTM_HeLa_A485_30min_R1 1 SPASKLDK 8 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 1 0 S(0.996)PAS(0.004)KLDK 54.982 0.021684 401570000 965470 883040 399480 1062700 944690 1156800 1626800 1960600 790950 1689300 TRUE FALSE FALSE 1180235.471 986303.8466 547264.2757 1120752.61 850633.3466 1217368.259 1279220.89 1479759.776 949686.41 1268188.599 0.930646649 0.777726473 0.431532247 0.883742852 0.670746723 0.959926828 1.008699251 1.166829426 0.748852663 1 20.27433788 -6.333886925 5.474240901 0.992490939 0.732243939 0.360665194 0.157879815 0.239776578 13.25374574 0.055966861 0.049377355 4.64E-07 6.333886925 -0.260247 S(ph)PASKLDK ddPTM_HeLa_A486_30min_R1 1 SPASKLDK 8 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC65;A0A494C1U5;A0A494C073;A0A0U1RQJ2;F6QMI7 F8W9J4;F6QMI7 DST Dystonin 1 0 S(1)PASKLDK 81.625 0.0038487 437590000 1164200 780260 418370 549760 833900 1119800 1388000 1191300 709050 1620400 TRUE FALSE FALSE 1082595.592 718429.3559 580374.0683 1279869.063 729304.4862 981650.4613 1040707.719 920066.9959 770511.0249 1214641.293 0.891288315 0.591474504 0.477815197 1.053701262 0.600427872 0.808181368 0.856802519 0.757480419 0.634352734 1 20.21209889 -11.28076273 2.224639129 2.095551897 0.740013405 0.187296546 0.161658855 5921860.92 740357.2433 32760743.58 0.042308522 5.24E-12 11.28076273 -1.355538492 S(ph)PAVKPAAAPK ddPTM_HeLa_A485_30min_R1 6 SPAVKPAAAPK 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK ;;;;; 121.76 5.58E-05 6215700000 10533010 6482000 4579830 13243290 8619310 7677940 10144530 7696200 7158420 15598290 TRUE FALSE FALSE 12876041.74 7240013.514 6274099.7 13966737.4 7761141.232 8079945.066 7977068.292 5808694.883 8595049.233 11709923.37 1.099583774 0.618280179 0.535793404 1.192726627 0.662783264 0.690008364 0.681222929 0.496048924 0.733997052 1 23.4812283 S(ph)PAVKPAAAPK ddPTM_HeLa_A486_30min_R1 6 SPAVKPAAAPK 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK;S(1)PAVKPAAAPK ;;;;; 123.02 3.42E-05 7248310000 17026740 17515870 6452090 6310290 11585890 18743930 19232380 16907010 12477960 22185580 TRUE FALSE FALSE 15833253.45 16127848.67 8950512.041 14690674.02 10132679.64 16431494.49 14420235.1 13057652.9 13559559.62 16630166.36 0.95208028 0.969794788 0.538209411 0.883375049 0.609295146 0.988053525 0.8671131 0.78517873 0.815359229 1 23.98729927 -6.303135014 24.99958009 0.876212788 0.791646411 0.106288265 0.142575298 1465.930658 878928.2996 0.050795143 0.044797635 4.98E-07 6.303135014 -0.084566377 S(ph)PCGLTEQYLHK ddPTM_HeLa_A485_30min_R1 2 SPCGLTEQYLHK 12 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 S(0.991)PCGLT(0.009)EQYLHK;S(1)PCGLTEQYLHK ; 214.65 1.87E-18 695040000 411790 543660 458620 494050 625700 561680 641170 560090 451810 725970 TRUE FALSE FALSE 503391.2648 607236.3078 628282.6228 521038.7005 563403.111 591088.6963 504178.7916 422727.0493 542484.1228 544999.0395 0.923655325 1.114197024 1.152814184 0.956035998 1.033768998 1.084568327 0.925100331 0.775647329 0.995385466 1 19.05589416 -6.836735784 6.132791229 0.902808436 1.047616027 0.305277261 0.086724593 0.22282242 13.94536365 0.036135454 0.024340422 1.46E-07 6.836735784 0.144807591 S(ph)PCGLTEQYLHK ddPTM_HeLa_A486_30min_R1 1 SPCGLTEQYLHK 12 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 S(1)PCGLTEQYLHK 155.06 4.72E-08 238240000 288480 278590 157560 120660 262340 286670 330990 327600 220390 401680 TRUE FALSE FALSE 268259.0417 256513.5138 218571.4516 280902.5778 229434.871 251303.57 248172.8011 253012.6315 239493.5826 301096.7135 0.890939787 0.851930633 0.725917759 0.932931398 0.761997261 0.83462741 0.824229525 0.840303531 0.795404174 1 18.19986744 -10.4670687 6.137694495 1.000092245 0.827846528 0.455236199 0.056210301 6.65E-05 5.77E-06 0.051012111 0.012365649 3.41E-11 10.4670687 -0.172245717 S(ph)PCGS(ph)PTGSPK ddPTM_HeLa_A486_30min_R1 1 SPCGSPTGSPK 11 0 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 2 0 S(0.995)PCGS(0.549)PT(0.35)GS(0.106)PK 91.914 0.0052678 131770000 247940 236600 124150 145330 213700 292870 332180 321800 196180 408250 TRUE FALSE FALSE 230560.6864 217850.9543 172224.2049 338335.5846 186895.7533 256738.6771 249065.0506 248533.1648 213185.0404 306021.5427 0.753413254 0.711881106 0.562784578 1.10559401 0.61072744 0.838956221 0.813880776 0.812142709 0.696634095 1 18.22327369 -14 0.233087543 2.228740784 0.74576619 0.191412711 0.141344759 277.6193169 2.777933859 161.6914655 0.230983661 1.00E-14 14 -1.482974594 S(ph)PCGSPT(ph)GSPK ddPTM_HeLa_A485_30min_R1 1 SPCGSPTGSPK 11 0 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 2 0 S(0.983)PCGS(0.499)PT(0.518)GSPK 101.89 0.0029349 146380000 140910 121780 98927 212380 196310 127040 217670 204350 129900 317060 TRUE FALSE FALSE 172254.9434 136021.1117 135524.214 223981.7816 176764.6871 133691.618 171163.0263 154232.8421 155969.7385 238022.7771 0.723691008 0.571462586 0.56937498 0.941009866 0.742637698 0.561675734 0.71910356 0.647975139 0.655272325 1 17.86074011 -10.10872268 3.748351125 1.00014159 0.68087789 0.442494954 0.107298221 94816009 165141916.3 168465.3469 0.028793322 7.79E-11 10.10872268 -0.3192637 S(ph)PDALESAQSEEEVDELSLIDHNEIMSR ddPTM_HeLa_A485_30min_R1 2 SPDALESAQSEEEVDELSLIDHNEIMSR 28 0 Q13905-2;Q13905;Q13905-4;Q13905-3;H0Y6R4 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 S(1)PDALESAQSEEEVDELSLIDHNEIMSR;S(1)PDALESAQSEEEVDELSLIDHNEIMSR ; 157.43 5.70E-10 117243000 12954.5 13073.8 13656 17567.8 18840.3 15254 19634.2 10425.6 16791.2 18879.4 TRUE FALSE FALSE 15836.18383 14602.66718 18707.92267 18527.48443 16964.49358 16052.67585 15439.19277 7868.705253 20161.03982 14173.11303 1.117339839 1.030307679 1.319958617 1.307227593 1.196949008 1.132614678 1.089329687 0.555185388 1.422484939 1 13.79086905 -6.892452157 3.953563121 0.964949079 1.189506645 0.132024594 0.211413416 0.377240242 10.92620076 0.090359368 0.058945681 1.28E-07 6.892452157 0.224557566 S(ph)PDALESAQSEEEVDELSLIDHNEIMSR ddPTM_HeLa_A486_30min_R1 2 SPDALESAQSEEEVDELSLIDHNEIMSR 28 0 Q13905-2;Q13905;Q13905-4;Q13905-3;H0Y6R4 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 S(0.879)PDALES(0.111)AQS(0.009)EEEVDELSLIDHNEIMSR;S(0.988)PDALES(0.012)AQSEEEVDELSLIDHNEIMSR ; 205.61 1.04E-28 128413000 13174.8 13354.6 10338.9 3842.9 14793.6 17598.2 13390.9 13224.2 12411.6 14629.9 TRUE FALSE FALSE 12251.31455 12296.33286 14342.39897 8946.465409 12938.04874 15427.11301 10040.35519 10213.33834 13487.44748 10966.47782 1.117160383 1.121265466 1.307840056 0.815801168 1.1797816 1.406751855 0.915549674 0.931323485 1.229879612 1 13.42081262 S(ph)PDEALPGGLSGCSSGSGHS(ph)PYALER ddPTM_HeLa_A486_30min_R1 1 SPDEALPGGLSGCSSGSGHSPYALER 26 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 2 0 S(1)PDEALPGGLS(0.021)GCS(0.061)S(0.116)GS(0.325)GHS(0.441)PY(0.035)ALER 99.969 0.0015609 75502000 38804 55832 42078 10300 58724 48146 61147 58786 42929 43310 TRUE FALSE FALSE 36084.03998 51407.66898 58371.72849 23978.92053 51358.28834 42206.23603 45847.37385 45401.71109 46650.12028 32464.8941 1.111478752 1.583484881 1.797995346 0.738610773 1.581963834 1.300057715 1.412213874 1.398486345 1.436940473 1 14.98659288 -10.01805103 4.342556723 0.999980759 1.379309081 0.142859767 0.274104898 33256257.05 19180111.79 5970.004002 0.063951964 9.59E-11 10.01805103 0.379328322 S(ph)PDEALPGGLSGCSSGSGHSPYALER ddPTM_HeLa_A486_30min_R1 1 SPDEALPGGLSGCSSGSGHSPYALER 26 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 S(1)PDEALPGGLSGCSSGSGHSPYALER 101.85 0.00087993 246870000 19155 23266 22280 9062.8 28542 20259 24789 26996 17346 26865 TRUE FALSE FALSE 17812.33342 21422.31743 30907.41268 21098.65641 24961.99622 17759.65056 18586.53001 20849.60012 18849.56525 20137.82914 0.884521032 1.063784844 1.53479367 1.047712555 1.239557454 0.881904918 0.922965921 1.035344971 0.936027668 1 14.29762055 -6.261725879 24.99962644 0.955440081 1.164299986 0.274277729 0.161279469 36.72864754 3204784.347 0.056688409 0.053132717 5.47E-07 6.261725879 0.208859906 S(ph)PDEVTLTSIVPTR ddPTM_HeLa_A485_30min_R1 4 SPDEVTLTSIVPTR 14 0 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR ;;; 196.33 9.44E-19 480348000 73973 87285 71794 71871 87607 72531 82972 72800 76454 100073 TRUE FALSE FALSE 90428.03865 97492.22147 98353.5882 75797.13074 78884.53947 76328.61101 65244.35438 54945.68585 91797.61652 75126.64281 1.203674692 1.29770502 1.309170549 1.008924769 1.050020825 1.015999227 0.868458272 0.731374168 1.221904947 1 16.19703701 -5.329169621 4.342301131 0.969329259 1.273593406 0.534082564 0.12157289 0.165588436 6.138686798 0.035401999 0.054807352 4.69E-06 5.329169621 0.304264147 S(ph)PDEVTLTSIVPTR ddPTM_HeLa_A486_30min_R1 4 SPDEVTLTSIVPTR 14 0 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR ;;; 247.3 1.16E-35 615734000 135805.1 160022 103013.8 22341.5 109238.4 111136 121216 108494.3 116899 152282 TRUE FALSE FALSE 126285.8638 147341.2739 142903.5022 52012.14108 95536.70126 97425.17027 90886.47471 83792.5163 127031.8994 114149.596 1.106318973 1.290773503 1.251896697 0.455648928 0.836942964 0.853486772 0.796204962 0.734058807 1.112854569 1 16.80056623 -5.221573717 24.91036943 0.816178461 1.223774312 0.531356881 0.16728116 368.0911834 230004.1225 0.044093012 0.076370031 6.00E-06 5.221573717 0.407595851 S(ph)PDGPVLSK ddPTM_HeLa_A485_30min_R1 1 SPDGPVLSK 9 0 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 S(1)PDGPVLSK 68.536 0.015925 292860000 536350 536160 420300 767980 683390 572440 713370 705190 595830 893580 TRUE FALSE FALSE 655659.2071 598859.248 575786.4601 809932.8028 615349.2921 602412.0732 560952.6718 532241.0468 715407.6157 670826.9511 0.977389483 0.892717931 0.858323386 1.207364733 0.917299597 0.898014119 0.836210696 0.793410351 1.066456281 1 19.35558113 -5.975992021 24.99998676 0.901511459 0.980193208 0.064172446 0.112688952 585.3431281 609526.5456 0.035529347 0.040284637 1.06E-06 5.975992021 0.078681749 S(ph)PDKPGGS(ph)PSASR ddPTM_HeLa_A485_30min_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 S(1)PDKPGGS(0.972)PS(0.024)AS(0.004)R 78.794 0.0066157 665250000 919490 619820 543590 1461000 913940 740630 1033200 908030 706800 1730800 TRUE FALSE FALSE 1124027.378 692302.5573 744686.5617 1540810.731 822944.9246 779408.2416 812448.3795 685334.2188 848648.2768 1299343.413 0.865073365 0.532809533 0.573125283 1.185837951 0.633354444 0.599847764 0.625276098 0.527446564 0.653136244 1 20.30935135 -10.20607169 5.494379117 1.000013714 0.684277041 0.195746984 0.189292327 3.26E-05 4.71E-06 0.188014402 0.045598211 6.22E-11 10.20607169 -0.315736673 S(ph)PDKPGGS(ph)PSASR ddPTM_HeLa_A486_30min_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 S(1)PDKPGGS(0.916)PS(0.084)ASR 111.57 0.00031811 808420000 1122900 1302900 650380 627940 1006700 1307500 1453100 1302100 1081800 1920800 TRUE FALSE FALSE 1044190.509 1199653.459 902224.5538 1461876.054 880430.2989 1146193.944 1089519.011 1005640.255 1175571.295 1439819.178 0.725223365 0.833197305 0.626623515 1.015319199 0.611486715 0.79606798 0.756705444 0.698448993 0.81647148 1 20.45745621 -8.026872771 19.25872421 1.000000008 0.760735462 0.312038744 0.108041724 136.1675153 97587.89453 0.095999729 0.024787646 9.40E-09 8.026872771 -0.239264546 S(ph)PDKPGGSPS(ph)ASR ddPTM_HeLa_A485_30min_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 S(1)PDKPGGS(0.094)PS(0.657)AS(0.249)R 125.77 0.0001219 139720000 289000 190260 140760 453560 239910 199300 313150 236580 186500 515700 TRUE FALSE FALSE 353287.053 212509.252 192832.9815 478336.8343 216023.718 209735.0398 246242.9443 178558.3841 223928.8393 387145.4808 0.912543399 0.548913167 0.498089197 1.235548025 0.557991062 0.541747354 0.636047575 0.461217793 0.578410056 1 18.56251628 -4.243622684 22.8466315 0.659516686 0.912544102 0.082319079 0.235936769 2882.863546 3696545.931 0.05868587 1.547138384 5.71E-05 4.243622684 0.253027416 S(ph)PDKPGGSPS(ph)ASRR ddPTM_HeLa_A486_30min_R1 2 SPDKPGGSPSASRR 14 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 S(1)PDKPGGS(0.032)PS(0.558)AS(0.411)RR;S(1)PDKPGGS(0.157)PS(0.422)AS(0.422)RR ; 71.742 0.0032471 129000000 382260 401890 179864 202605 307240 405420 491420 437830 274560 629160 TRUE FALSE FALSE 355465.548 370042.7727 249512.1577 471674.6791 268703.0943 355403.4024 368461.5183 338145.6668 298359.0819 471614.2409 0.75372098 0.784630193 0.529059846 1.000128152 0.569751867 0.753589208 0.781277337 0.716996302 0.632633742 1 18.84724776 -11.33318243 2.18809545 2.465877159 0.726493994 0.305334973 0.124571447 3527786.05 401740.615 25650972.68 0.029041906 4.64E-12 11.33318243 -1.739383165 S(ph)PDKPGGSPSAS(ph)R ddPTM_HeLa_A486_30min_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 S(1)PDKPGGS(0.242)PS(0.189)AS(0.569)R 90.259 0.0065835 223170000 583840 669320 298050 318860 388870 742300 782440 655230 501560 1132200 TRUE FALSE FALSE 542915.831 616280.6456 413462.9421 742322.1943 340094.2985 650722.5732 586665.2362 506048.4326 545035.6246 848689.7506 0.639710602 0.7261554 0.487177961 0.874668504 0.400728651 0.766737872 0.691259952 0.59627023 0.642208327 1 19.69487773 -10.28324488 5.166186015 1.00006985 0.647580914 0.406945878 0.127764511 9.39E-05 1.30E-05 0.113062787 0.027416339 5.21E-11 10.28324488 -0.352488936 S(ph)PDKPGGSPSASR ddPTM_HeLa_A485_30min_R1 6 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 S(0.999)PDKPGGSPSASR;S(1)PDKPGGSPSASR;S(1)PDKPGGSPSASR;S(1)PDKPGGSPSASR;S(1)PDKPGGSPSASR;S(1)PDKPGGSPSASR ;;;;; 97.384 0.00049597 4802279000 2918305 2068451 1591387 4625100 2498482 2064068 3184854 2295676 2135623 5471870 TRUE FALSE FALSE 3567471.879 2310338.351 2180107.274 4877757.502 2249724.359 2172139.409 2504383.925 1732657.862 2564222.947 4107833.511 0.86845581 0.562422587 0.530719482 1.187428236 0.547666879 0.528779806 0.609660523 0.421793594 0.624227574 1 21.96994628 -4.244746759 22.90235652 0.652004526 0.86845635 0.061929968 0.22630659 2953.600487 4052141.38 0.056383459 1.329012641 5.69E-05 4.244746759 0.216451824 S(ph)PDKPGGSPSASR ddPTM_HeLa_A486_30min_R1 3 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 S(1)PDKPGGSPSASR;S(1)PDKPGGSPSASR;S(0.999)PDKPGGSPS(0.001)ASR ;; 74.12 0.0042086 3221620000 1601130 1746910 687896 736560 1117030 1742470 2148070 1725470 1305390 2506280 TRUE FALSE FALSE 1488899.055 1608478.489 954267.7537 1714748.904 976921.6815 1527501.768 1610600.166 1332618.148 1418542.256 1878691.175 0.792519322 0.856169716 0.507942852 0.912735912 0.520001209 0.813066984 0.857299054 0.709333266 0.75506942 1 20.8412965 -8.07122965 19.43518244 1.000000001 0.744963237 0.255252583 0.129649397 3350.022551 914064.0303 0.118408904 0.030573047 8.49E-09 8.07122965 -0.255036764 S(ph)PDKPGGSPSASRR ddPTM_HeLa_A485_30min_R1 1 SPDKPGGSPSASRR 14 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 S(0.999)PDKPGGS(0.001)PSASRR 82.59 0.0015752 64493000 45180 55256 42503 51331 56948 56170 80704 95389 44555 71988 TRUE FALSE FALSE 55230.13513 61717.70854 58226.6284 54135.08255 51278.05716 59110.97434 63460.93111 71994.69819 53496.77982 54042.71644 1.021971854 1.142017141 1.077418609 1.001709132 0.948843073 1.093782442 1.174273525 1.332181336 0.989898054 1 15.72181257 -6.53009942 7.833068935 1.149577012 1.041974771 0.118268197 0.101877077 0.222892195 100.2532731 0.038227543 0.030508101 2.95E-07 6.53009942 -0.107602241 S(ph)PDLEASLDTLENNCHVGSDIDFRPK ddPTM_HeLa_A485_30min_R1 6 SPDLEASLDTLENNCHVGSDIDFRPK 26 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK ;;;;; 355.58 6.61E-143 1594303000 327867 296443 245325 382898 333321 282812 368378 297974 272496 567185 TRUE FALSE FALSE 400799.883 331109.4301 336080.9263 403814.7482 300134.3909 297619.599 289671.0309 224895.4093 327183.4477 425796.2178 0.941295076 0.777624169 0.789299933 0.948375611 0.704878011 0.698971918 0.680304378 0.528176155 0.768403837 1 18.69980361 -5.791183221 22.82885847 0.7024825 0.852621943 0.201659444 0.122646223 106.6782779 81876.11972 0.03654055 0.041443229 1.62E-06 5.791183221 0.150139443 S(ph)PDLEASLDTLENNCHVGSDIDFRPK ddPTM_HeLa_A486_30min_R1 5 SPDLEASLDTLENNCHVGSDIDFRPK 26 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(0.998)PDLEAS(0.002)LDTLENNCHVGSDIDFRPK ;;;; 312.53 4.30E-106 1941415000 249001 291317 162836.9 71458.4 227900 298446 307906 279670 227763 300476 TRUE FALSE FALSE 231547.3157 268231.98 225891.7086 166358.7665 199314.6569 261626.7669 230864.6621 215995.2462 247505.6802 225234.8538 1.028026133 1.190899079 1.002916311 0.738601347 0.884919246 1.161573187 1.02499528 0.958977896 1.098878242 1 17.78107057 -8.863132999 14.82948373 0.999999125 1.006830662 3.32E-06 0.124977181 0 0 0.130892668 0.031746135 1.37E-09 8.863132999 0.006831537 S(ph)PDLSSQKR ddPTM_HeLa_A486_30min_R1 1 SPDLSSQKR 9 1 Q9Y2I7 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 0 S(1)PDLSSQKR 83.397 0.0035771 0 157180 180920 96620 53409 147530 169000 177370 161760 135670 218000 TRUE FALSE FALSE 146162.4937 166583.2403 134033.8516 124338.8511 129025.4117 148150.4983 132990.15 124930.7792 147429.9848 163411.3811 0.894445006 1.019410271 0.82022348 0.760894684 0.789574208 0.906610649 0.813836522 0.764517002 0.902201449 1 17.31814894 -4.77631081 24.99923174 0.832464519 0.95692764 0.245135092 0.076362772 240.116632 403642.9469 0.019061257 0.039935615 1.67E-05 4.77631081 0.124463121 S(ph)PDPGIVPQEAPVGNSLSELSEENFDGK ddPTM_HeLa_A485_30min_R1 1 SPDPGIVPQEAPVGNSLSELSEENFDGK 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 S(1)PDPGIVPQEAPVGNSLSELSEENFDGK 114.83 0.00014164 31088000 24940 18922 12905 25954 24388 17553 27818 21339 20459 37615 TRUE FALSE FALSE 30487.81696 21134.7633 17679.09652 27371.8013 21959.84509 18472.04794 21874.45705 16105.57679 24564.93364 28238.27275 1.079662953 0.748443911 0.626068622 0.969315706 0.777662475 0.654149356 0.774638635 0.570345677 0.869916296 1 14.78536423 -5.990351047 24.91671974 0.743552543 0.836997767 0.038251408 0.157930462 583.1530153 1505878.428 0.047828199 0.054164318 1.02E-06 5.990351047 0.093445224 S(ph)PDPYR ddPTM_HeLa_A485_30min_R1 3 SPDPYR 6 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6 P18583-10 SON Protein SON 1 0 S(1)PDPYR;S(1)PDPYR;S(1)PDPYR ;; 89.369 0.016061 6183600000 3667050 3976940 3863210 4363490 4263170 3386730 3926810 3141650 3316970 4602080 TRUE FALSE FALSE 4482772.621 4442008.538 5292372.141 4601856.41 3838713.826 3564053.946 3087814.964 2371155.412 3982655.454 3454866.151 1.297524253 1.285725219 1.531860254 1.331992676 1.111103487 1.031604059 0.893758203 0.686323379 1.152766932 1 21.72019839 -6.020145464 1.784246298 0.918033867 1.374273559 0.694303046 0.127846674 0.191648013 1.23019536 0.049255135 0.053527079 9.55E-07 6.020145464 0.456239691 S(ph)PDPYR ddPTM_HeLa_A486_30min_R1 2 SPDPYR 6 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6 P18583-10 SON Protein SON 1 0 S(0.999)PDPY(0.001)R;S(1)PDPYR ; 133.81 0.0052371 8008000000 7313800 8516700 5531800 2304910 7074300 7164400 7050600 6590700 6463900 7898500 TRUE FALSE FALSE 6801140.389 7841805.675 7673861.107 5365946.964 6186975.329 6280529.17 5286465.306 5090141.484 7024196.056 5920664.189 1.148712403 1.324480738 1.296114906 0.906308278 1.044979943 1.060781184 0.892883828 0.859724741 1.186386499 1 22.4973276 -5.255213441 24.99735741 0.987981795 1.263240506 0.596973482 0.0990804 329.3208408 1322231.055 0.026909392 0.045133864 5.56E-06 5.255213441 0.275258711 S(ph)PDRLADINYEGR ddPTM_HeLa_A485_30min_R1 2 SPDRLADINYEGR 13 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 S(1)PDRLADINYEGR;S(1)PDRLADINYEGR ; 139.29 2.01E-06 115470000 73757 115208 109993 78245 152091 112535 126645 151822 99079 91805 TRUE FALSE FALSE 90163.99019 128680.5734 150683.9879 82519.32622 136948.286 118427.1586 99586.26116 114587.4165 118963.2465 68919.70305 1.308246934 1.867108646 2.186370243 1.197325621 1.98707017 1.7183353 1.444960683 1.662622028 1.726113742 1 16.07262886 -11.4018334 0.373553249 1.89E-08 1.713467272 0.332422325 0.286455326 70.0242247 3.194129023 57.73706051 0.199076899 3.96E-12 11.4018334 1.713467253 S(ph)PDRLADINYEGR ddPTM_HeLa_A486_30min_R1 2 SPDRLADINYEGR 13 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 S(1)PDRLADINYEGR;S(1)PDRLADINYEGR ; 173.37 1.34E-12 178230000 97327 119972 96336 35995 148484 101323 118026 123918 88844 122946 TRUE FALSE FALSE 90504.8799 110464.9818 133639.8792 83798.17909 129859.7522 88822.79844 88494.64645 95704.57651 96545.06945 92159.52136 0.982045898 1.198627989 1.450093026 0.909273159 1.40907581 0.963794051 0.960233356 1.03846651 1.04758649 1 16.4918456 -6.334166704 24.99996196 1.001808553 1.189190979 0.26514062 0.156329112 202.4015524 69574.28928 0.053137391 0.046862756 4.63E-07 6.334166704 0.187382426 S(ph)PDSCRPQALPCLPSTQDVPSR ddPTM_HeLa_A485_30min_R1 1 SPDSCRPQALPCLPSTQDVPSR 22 1 Q9Y283-2;Q9Y283 Q9Y283-2 INVS Inversin 1 0 S(1)PDSCRPQALPCLPSTQDVPSR 105.17 9.51E-05 235290000 28644 37692 44581 37872 53693 34802 42704 51120 44830 56339 TRUE FALSE FALSE 35015.75898 42099.75152 61073.36707 39940.85146 48347.13639 36624.17891 33579.94154 38582.73985 53826.96979 42294.72414 0.82789898 0.995390143 1.443994926 0.94434595 1.14310088 0.865927835 0.793951071 0.912235288 1.272663929 1 15.36819009 -6.25468298 24.35158932 0.952532545 1.080440201 0.062250574 0.190955553 1014.687562 3657163.871 0.065669844 0.064239918 5.56E-07 6.25468298 0.127907656 S(ph)PDSTANVR ddPTM_HeLa_A486_30min_R1 1 SPDSTANVR 9 0 B7ZM87;O75044;A0A075B7B5;E9PDX4;A0A087WW56;A0A286YEY3;P0DMP2 B7ZM87 SRGAP2;SRGAP2B SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B 1 0 S(0.999)PDSTANVR 110.18 0.00093302 834240000 404570 424810 360370 212050 573190 365420 528430 608340 323890 447000 TRUE FALSE FALSE 376211.7322 391146.5085 499914.915 493663.1164 501295.1654 320338.1957 396211.2248 469834.262 351965.046 335068.2905 1.122791213 1.167363548 1.491979185 1.473320903 1.496098496 0.956038529 1.182479023 1.402204492 1.050427796 1 18.35409564 -6.25287509 24.98276421 1.147383312 1.354851307 0.320942199 0.166040368 946.431142 2760822.157 0.05928476 0.058371588 5.59E-07 6.25287509 0.207467995 S(ph)PDVISSASTALSQDIPEIASEALSR ddPTM_HeLa_A486_30min_R1 1 SPDVISSASTALSQDIPEIASEALSR 26 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 S(0.963)PDVIS(0.017)S(0.017)AST(0.002)ALSQDIPEIASEALSR 178.39 2.36E-16 322890000 17770 30442 27869 12457 30739 33417 27615 22065 24461 31557 TRUE FALSE FALSE 16524.41476 28029.66505 38660.62316 29000.52554 26883.42799 29294.3503 20705.43492 17041.28118 26581.29918 23654.9218 0.698561378 1.184940085 1.634358527 1.225982727 1.136483486 1.238404022 0.875311916 0.720411647 1.123711141 1 14.52985277 -6.761542036 24.99999996 0.906559603 1.206270728 0.221560346 0.232225695 3.934574861 957664.6111 0.096545031 0.069813482 1.73E-07 6.761542036 0.299711124 S(ph)PEAKPLPGKLPK ddPTM_HeLa_A485_30min_R1 1 SPEAKPLPGKLPK 13 2 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 S(1)PEAKPLPGKLPK 84.508 0.0012302 561120000 662870 416120 209270 699790 488130 566640 748490 709530 440570 1025900 TRUE FALSE FALSE 810323.1446 464781.6142 286687.6815 738017.7557 439530.0633 596308.3942 588568.9969 535516.655 528988.3579 770162.0103 1.052146346 0.603485511 0.372243343 0.958262996 0.570698187 0.774263579 0.764214528 0.695329876 0.686853351 1 19.55480244 -10.68362427 2.386262878 1.05077392 0.710911496 0.174481317 0.181988051 10741120.49 7953827.999 3293478.248 0.046724223 2.07E-11 10.68362427 -0.339862423 S(ph)PEAVGPELEAEEK ddPTM_HeLa_A485_30min_R1 3 SPEAVGPELEAEEK 14 0 Q96N64-3;Q96N64-2;Q96N64 Q96N64-3 PWWP2A PWWP domain-containing protein 2A 1 0 S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK ;; 244.67 1.75E-35 1343610000 501510 438080 292628 648600 513500 506740 760730 717760 422270 909130 TRUE FALSE FALSE 613069.1693 489309.6452 400883.2745 684031.3757 462374.137 533272.1228 598193.8209 541728.2346 507015.7157 682500.6223 0.898269026 0.716936555 0.587374226 1.00224286 0.677470645 0.781350383 0.876473664 0.793740279 0.742879492 1 19.38047084 -14 0.359595278 3.644402804 0.778238871 0.242196885 0.112357916 695.6403332 5.565602569 1423.556595 0.081459837 1.00E-14 14 -2.866163933 S(ph)PEAVGPELEAEEK ddPTM_HeLa_A486_30min_R1 4 SPEAVGPELEAEEK 14 0 Q96N64-3;Q96N64-2;Q96N64 Q96N64-3 PWWP2A PWWP domain-containing protein 2A 1 0 S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK ;;; 242.41 2.26E-35 1589300000 1044240 918210 520175 498267 891736 1103020 1440190 1310620 795665 1631100 TRUE FALSE FALSE 971044.1685 845447.6955 721600.6908 1159990.757 779886.1558 966940.6071 1079839.229 1012220.437 864633.8828 1222661.943 0.794204951 0.691481157 0.590188232 0.948742016 0.637859189 0.790848699 0.883187078 0.827882508 0.707173301 1 20.22159413 -14 0.138597373 1.803050787 0.678388855 0.327247672 0.103422971 162.3828173 1.382939904 36.07057795 0.648309667 1.00E-14 14 -1.124661933 S(ph)PEDQLGK ddPTM_HeLa_A485_30min_R1 3 SPEDQLGK 8 0 Q9UK61;Q9UK61-3;Q9UK61-2 Q9UK61 FAM208A Protein FAM208A 1 0 S(1)PEDQLGK;S(1)PEDQLGK;S(1)PEDQLGK ;; 149.23 0.00025513 1388290000 1488680 1137890 867070 2046840 1493330 1329380 1968490 1655400 1145980 2475670 TRUE FALSE FALSE 1819831.73 1270956.337 1187835.275 2158653.686 1344648.822 1398984.281 1547906.03 1249410.554 1375967.674 1858531.03 0.97917748 0.683849942 0.639125877 1.161483802 0.723500872 0.752736574 0.832865314 0.672257032 0.740352274 1 20.82573135 S(ph)PEDQLGK ddPTM_HeLa_A486_30min_R1 4 SPEDQLGK 8 0 Q9UK61;Q9UK61-3;Q9UK61-2 Q9UK61 FAM208A Protein FAM208A 1 0 S(1)PEDQLGK;S(1)PEDQLGK;S(1)PEDQLGK;S(1)PEDQLGK ;;; 150.04 0.00023905 2625670000 2145530 2216590 1048810 921000 1854290 2411100 2833310 2524810 1675520 3096870 TRUE FALSE FALSE 1995139.427 2040939.336 1454937.32 2144134.545 1621707.658 2113642.996 2124385.87 1949965.879 1820755.423 2321393.595 0.859457625 0.879187114 0.626751673 0.923641105 0.698592286 0.910506086 0.915133855 0.839997958 0.78433723 1 21.14655972 -6.309052008 24.99758964 0.881566087 0.7995814 0.184933195 0.096205119 794.9700868 417373.1292 0.032907895 0.029022115 4.91E-07 6.309052008 -0.081984687 S(ph)PEGTPQK ddPTM_HeLa_A485_30min_R1 2 SPEGTPQK 8 0 C9J0I9;Q86WB0;Q86WB0-3;F8WBD7;F8WDK5;F8WF13;F8WAU5 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 S(0.994)PEGT(0.006)PQK;S(0.996)PEGT(0.004)PQK ; 79.489 0.0095634 1089300000 1635250 2417030 1501900 2105140 1876870 2428070 2080050 3315400 2097610 2781600 TRUE FALSE FALSE 1999005.721 2699680.633 2057515.309 2220138.468 1690002.233 2555199.991 1635630.325 2502292.952 2518581.087 2088198.312 0.957287299 1.292827706 0.985306471 1.063183729 0.809311177 1.223638568 0.783273464 1.198302354 1.206102444 1 20.9938273 -9.889283577 8.647384783 1.000004691 1.056280679 0.010635636 0.166430595 0 0 0.154449928 0.03745961 1.29E-10 9.889283577 0.056275988 S(ph)PEGTPQK ddPTM_HeLa_A486_30min_R1 2 SPEGTPQK 8 0 C9J0I9;Q86WB0;Q86WB0-3;F8WBD7;F8WDK5;F8WF13;F8WAU5 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 S(1)PEGTPQK;S(1)PEGTPQK ; 116.37 0.00093923 1914380000 2761000 1411180 1846070 831970 1936250 3650900 2198100 1843030 2862100 3307200 TRUE FALSE FALSE 2567468.158 1299352.957 2560917.743 1936868.205 1693387.47 3200489.078 1648112.131 1423412.302 3110189.132 2479055.594 1.035663809 0.524132238 1.033021506 0.781292767 0.68307765 1.291011418 0.66481451 0.574175224 1.254586279 1 21.24135919 S(ph)PEIHR ddPTM_HeLa_A485_30min_R1 7 SPEIHR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 Q9NYF8-2;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 0 S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR ;;;;;; 98.997 0.010611 18759340000 5241154 6214670 6403300 5759422 5562860 5143620 5899690 5347090 6276360 7223750 TRUE FALSE FALSE 6407030.626 6941421.596 8772147.134 6074044.64 5009002.126 5412931.99 4639173.035 4035707.794 7535967.882 5423002.068 1.181454579 1.279996118 1.617581373 1.12005206 0.923658531 0.99814308 0.855462155 0.74418334 1.38963028 1 22.37066029 -5.498409004 7.365382406 0.970952679 1.355470364 0.444763721 0.186713196 0.174769904 39.95696071 0.052940553 0.075762414 3.17E-06 5.498409004 0.384517685 S(ph)PEIHR ddPTM_HeLa_A486_30min_R1 6 SPEIHR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 Q9NYF8-2;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 0 S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR;S(1)PEIHR ;;;;; 96.111 0.013569 16334660000 6613780 7696250 7773060 2159320 7166800 8749820 6660970 5753550 8705790 7195230 TRUE FALSE FALSE 6150188.176 7086371.121 10782997 5027006.086 6267873.116 7670356.17 4994324.853 4443592.264 9460414.887 5393497.575 1.140296828 1.313873052 1.99925871 0.932049383 1.16211661 1.422148812 0.925990006 0.823879533 1.754040816 1 22.3627897 S(ph)PEIHRR ddPTM_HeLa_A485_30min_R1 4 SPEIHRR 7 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4;Q9Y2W1;A0A3B3ITZ9 Q9NYF8-2;Q9NYF8-4;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 0 S(1)PEIHRR;S(1)PEIHRR;S(1)PEIHRR;S(1)PEIHRR ;;; 99.815 0.0026964 6154800000 1948440 1600640 978980 1907850 655720 2273830 1187150 1544110 1584840 1871290 TRUE FALSE FALSE 2381863.756 1787820.924 1341145.441 2012071.015 590434.2144 2392884.223 933505.7044 1165414.601 1902902.851 1404811.842 1.695503758 1.272640842 0.954679766 1.432270825 0.420294161 1.703348557 0.664505862 0.829587684 1.354560657 1 20.42194548 -4.285172389 1.913329677 1.036537998 1.885206948 0.23526157 0.357243226 1.053773125 4.222966996 0.090907949 1.563398421 5.19E-05 4.285172389 0.84866895 S(ph)PEKDVPMVEK ddPTM_HeLa_A486_30min_R1 1 SPEKDVPMVEK 11 1 A0A2R8Y611;O14617-2;O14617-5;O14617-3;O14617 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 S(1)PEKDVPMVEK 55.66 0.0074638 0 173690 171410 60239 76622 101700 206030 219620 202880 145190 315040 TRUE FALSE FALSE 161515.2279 157826.8473 83565.15406 178379.8883 88943.83769 180612.1134 164668.7531 156688.6528 157775.1861 236151.9334 0.683946244 0.668327568 0.353861825 0.755360694 0.376638194 0.764813189 0.697300042 0.663507813 0.668108805 1 17.84935582 -9.453701598 0.344989351 1.121590852 0.576308426 0.435949418 0.132596053 7.489305707 0.947220214 1.19712165 0.114506128 3.52E-10 9.453701598 -0.545282425 S(ph)PEMDKLK ddPTM_HeLa_A485_30min_R1 2 SPEMDKLK 8 1 O43149;O43149-3 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 S(1)PEMDKLK;S(1)PEMDKLK ; 80.755 0.0041709 444940000 869260 599990 348500 1311790 825960 835350 1382980 1208560 625500 1833290 TRUE FALSE FALSE 1062623.888 670153.6113 477424.6523 1383449.766 743724.5223 879087.6343 1087495.025 912158.7651 751032.1126 1376284.542 0.772096071 0.486929549 0.346893856 1.005206208 0.540385727 0.638739743 0.790167289 0.662769026 0.545695377 1 20.39234734 -14 0.332171845 4.636972456 0.629249134 0.26801045 0.174612671 505.2190851 4.359031451 1299.204673 0.147163666 1.00E-14 14 -4.007723322 S(ph)PEMDKLK ddPTM_HeLa_A486_30min_R1 2 SPEMDKLK 8 1 O43149;O43149-3 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 S(1)PEMDKLK;S(1)PEMDKLK ; 91.313 0.0018115 541340000 1035810 939870 368900 557010 743000 1189380 1568860 1405730 747730 1829190 TRUE FALSE FALSE 963205.0679 865391.2783 511747.9595 1296747.43 649806.0118 1042646.388 1176314.634 1085675.966 812543.8384 1371148.918 0.702480274 0.631143173 0.37322566 0.94573785 0.473913521 0.760418051 0.85790436 0.791800184 0.592600722 1 20.38695384 -6.498022139 23.17814137 0.795502773 0.628196939 0.216273869 0.167949003 504.6659791 470589.0302 0.057250918 0.050201866 3.18E-07 6.498022139 -0.167305834 S(ph)PENSTLEEILGQYQR ddPTM_HeLa_A485_30min_R1 2 SPENSTLEEILGQYQR 16 0 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 S(0.998)PENS(0.001)T(0.001)LEEILGQYQR;S(0.999)PENS(0.001)TLEEILGQYQR ; 151.44 4.49E-08 85757000 13112.4 12653.2 14226.6 13994.6 18248.2 14142.7 11733.2 11268 14154.4 18664 TRUE FALSE FALSE 16029.20814 14132.88167 19489.61136 14759.08956 16431.34513 14883.1899 9226.305969 8504.505332 16995.05825 14011.40829 1.14401121 1.008669606 1.390981617 1.053362322 1.172711893 1.062219414 0.65848527 0.60697006 1.212944331 1 13.77431435 -6.58147705 6.864205106 0.837684767 1.150135281 0.341275921 0.184551209 0.222764117 20.75095739 0.069791536 0.053978899 2.62E-07 6.58147705 0.312450514 S(ph)PENSTLEEILGQYQR ddPTM_HeLa_A486_30min_R1 2 SPENSTLEEILGQYQR 16 0 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 S(0.987)PENS(0.013)TLEEILGQYQR;S(1)PENSTLEEILGQYQR ; 256.67 1.50E-50 84144000 21234 17733.2 13038.5 10105.5 18411.1 16548.6 17145.8 17848.5 11781 17682.3 TRUE FALSE FALSE 19745.60625 16327.95665 18087.35638 23526.1147 16101.80816 14507.00199 12855.73949 13784.78618 12802.18657 13254.53699 1.489724331 1.231876803 1.364616237 1.774948059 1.214814835 1.094493304 0.969912378 1.040005109 0.965872031 1 13.69419865 -6.096263037 3.328481839 1.013224565 1.445382946 0.706103374 0.135550807 0.150370685 3.152873187 0.048372918 0.049478901 8.01E-07 6.096263037 0.432158381 S(ph)PEPDGPAPAFLR ddPTM_HeLa_A485_30min_R1 4 SPEPDGPAPAFLR 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR ;;; 186.17 3.00E-17 445145000 253279 274703 256208 266558 294518 220899 262364 235083 235214 338093 TRUE FALSE FALSE 309620.0397 306827.1263 350990.0009 281119.3886 265194.7538 232464.9301 206307.7881 177428.5257 282419.2923 253812.6372 1.219876375 1.208872535 1.38287047 1.107586256 1.044844562 0.915891867 0.812834973 0.699053158 1.112707765 1 17.95340438 -5.833356788 1.685371042 0.882720599 1.26193375 0.639327268 0.115842799 0.214906267 1.261802997 0.042232902 0.053256955 1.47E-06 5.833356788 0.379213151 S(ph)PEPDGPAPAFLR ddPTM_HeLa_A486_30min_R1 4 SPEPDGPAPAFLR 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR ;;; 179.59 4.84E-17 520040000 248077 302799 211131 80959 246127 270626 278836 240396 250362 282948 TRUE FALSE FALSE 230688.0834 278804.1045 292886.5775 188476.6434 215255.4566 237238.9156 209068.2836 185663.0786 272063.5797 212095.9791 1.087658919 1.314518576 1.380915276 0.888638456 1.014896452 1.118545088 0.98572488 0.87537293 1.282738036 1 17.69435775 -5.258984852 24.99533664 1.020511953 1.266379688 0.415943272 0.128789862 204.9105895 2086667.554 0.034774838 0.056798296 5.51E-06 5.258984852 0.245867735 S(ph)PEPDPYLSYR ddPTM_HeLa_A485_30min_R1 1 SPEPDPYLSYR 11 0 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)PEPDPYLSYR 71.555 0.012599 176770000 129920 135600 131140 217990 174740 133620 168220 144270 148660 260520 TRUE FALSE FALSE 158820.2558 151457.2404 179654.1432 229898.2417 157342.2721 140616.1366 132278.4228 108887.5563 178494.6984 195577.1585 0.812059327 0.774411703 0.918584484 1.175486153 0.804502291 0.718980364 0.676349037 0.556749863 0.91265616 1 17.57737836 -5.989449464 24.96458184 0.741710399 0.919663099 0.159707699 0.152662461 328.1752754 776519.9044 0.048297081 0.05471016 1.02E-06 5.989449464 0.1779527 S(ph)PEPDPYLSYR ddPTM_HeLa_A486_30min_R1 2 SPEPDPYLSYR 11 0 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)PEPDPYLSYR;S(1)PEPDPYLSYR ; 142.89 1.08E-06 359070000 290350 429690 298010 142535 381470 399790 444990 390640 352990 412680 TRUE FALSE FALSE 269997.9644 395639.7995 413407.453 331828.6833 333622.4755 350467.9746 333648.7954 301699.7996 383587.4574 309342.2419 0.872813111 1.278971139 1.33640802 1.072691144 1.078489874 1.132945738 1.078574957 0.97529454 1.240009948 1 18.23884433 S(ph)PEPEATLTFPFLDK ddPTM_HeLa_A485_30min_R1 8 SPEPEATLTFPFLDK 15 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(0.588)PEPEAT(0.412)LTFPFLDK;S(0.965)PEPEAT(0.035)LTFPFLDK ;;;;;;; 192.32 2.81E-18 5129789000 1298731 963169 793463 1863613 1087187 894644 1186436 777281 1009343 2277687 TRUE FALSE FALSE 1587629.23 1075803.236 1086997.982 1965417.459 978942.8449 941486.1765 932944.2563 586651.616 1211908.882 1709901.549 0.928491603 0.629160923 0.635707935 1.149433113 0.572514158 0.550608412 0.54561285 0.343090874 0.70875945 1 20.70548183 -5.897313149 22.59592702 0.579950472 0.813464459 0.184031204 0.210456713 8.725037972 1897.953487 0.063501264 0.072003722 1.27E-06 5.897313149 0.233513986 S(ph)PEPEATLTFPFLDK ddPTM_HeLa_A486_30min_R1 8 SPEPEATLTFPFLDK 15 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.623)PEPEAT(0.345)LT(0.032)FPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(0.561)PEPEAT(0.439)LTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK ;;;;;;; 266.15 9.71E-51 9105424000 1602883 1797420 858165 658852 1220092 1834346 1775436 1646528 1453416 2042783 TRUE FALSE FALSE 1490529.179 1654985.893 1190469.47 1533840.753 1067056.684 1608043.041 1331203.134 1271649.518 1579399.269 1531256.841 0.973402462 1.080802286 0.777445977 1.001687445 0.696850232 1.050145866 0.869353265 0.830461281 1.031439813 1 20.54628486 -4.739919471 24.999954 0.900737453 1.027102381 0.150614242 0.113098122 400.127475 464826.0288 0.026583525 0.070193285 1.82E-05 4.739919471 0.126364928 S(ph)PEPEATLTFPFLDKMPEANQLHLPNLNSQVDSPSSEK ddPTM_HeLa_A485_30min_R1 2 SPEPEATLTFPFLDKMPEANQLHLPNLNSQVDSPSSEK 38 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.998)PEPEAT(0.001)LT(0.002)FPFLDKMPEANQLHLPNLNSQVDSPSSEK;S(0.961)PEPEAT(0.039)LT(0.001)FPFLDKMPEANQLHLPNLNSQVDSPSSEK ; 276.65 4.09E-79 1020530000 161930 103217 80666 213364 164018 146284 233630 192400 149836 340290 TRUE FALSE FALSE 197950.7698 115287.3303 110507.7102 225019.5351 147687.792 153943.204 183713.0419 145213.5983 179906.7108 255461.9656 0.774873745 0.451289608 0.432579895 0.880833805 0.578120472 0.602607138 0.719140485 0.568435297 0.70424069 1 17.96274899 -14 0.254836855 3.334511947 0.596912678 0.415162173 0.131443841 185.2153642 1.831279972 225.5042658 0.18289453 1.00E-14 14 -2.737599269 S(ph)PEPEVLSTQEDLFDQSNK ddPTM_HeLa_A485_30min_R1 3 SPEPEVLSTQEDLFDQSNK 19 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(1)PEPEVLSTQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK ;; 273.82 1.62E-69 415680000 555230 403330 324103 872750 439460 405450 588290 362550 440430 1058800 TRUE FALSE FALSE 678738.998 450495.935 444002.1868 920426.1226 395705.8194 426678.7351 462597.0356 273634.044 528820.2611 794860.6458 0.853909426 0.5667609 0.558591231 1.157971687 0.497830433 0.536796906 0.581985079 0.34425411 0.665299338 1 19.60034243 -4.248621853 23.07630663 0.637684332 0.853909835 0.056324937 0.230859506 2082.40982 3748910.916 0.057412006 0.920765226 5.64E-05 4.248621853 0.216225503 S(ph)PEPEVLSTQEDLFDQSNK ddPTM_HeLa_A486_30min_R1 4 SPEPEVLSTQEDLFDQSNK 19 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(1)PEPEVLSTQEDLFDQSNK;S(0.998)PEPEVLS(0.002)TQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK ;;; 269.48 3.97E-59 836410000 780820 837730 353512 274598 523365 847120 840670 762370 674650 1063460 TRUE FALSE FALSE 726088.5502 771345.2238 490401.3138 639278.0214 457719.6815 742610.9473 630325.4743 588794.9934 733129.2052 797162.694 0.910841106 0.967613299 0.615183472 0.801941719 0.574186029 0.931567612 0.790711205 0.738613332 0.919673249 1 19.60451467 -7.945924178 4.481448368 0.998954956 0.789608057 0.248248308 0.120998181 0.252045119 10.18387643 0.11737209 0.030740463 1.13E-08 7.945924178 -0.209346899 S(ph)PEPGQTWTR ddPTM_HeLa_A485_30min_R1 6 SPEPGQTWTR 10 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(0.998)PEPGQT(0.002)WTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR ;;;;; 158.34 1.14E-06 19649390000 1830220 1924990 1676090 2103030 1853006 1613030 1884180 1452060 1664450 2405120 TRUE FALSE FALSE 2237346.125 2150100.835 2296145.439 2217913.204 1668514.216 1697485.757 1481609.551 1095940.008 1998489.848 1805567.847 1.239137111 1.190816971 1.271702663 1.228374335 0.924093891 0.940139557 0.820578165 0.606978026 1.106848381 1 20.7840212 -5.803103701 3.778003019 0.871580351 1.235984723 0.63263623 0.123650341 0.137693568 4.09911976 0.038909542 0.046588169 1.57E-06 5.803103701 0.364404373 S(ph)PEPGQTWTR ddPTM_HeLa_A486_30min_R1 6 SPEPGQTWTR 10 0 Q09666;E9PJZ0;E9PKR9;E9PJC6;E9PLK4;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR ;;;;; 155.99 1.90E-06 17892400000 1356990 1780450 1202820 407355 1403900 1468630 1483470 1339780 1459310 1700070 TRUE FALSE FALSE 1261872.009 1639360.658 1668584.117 948343.0266 1227809.771 1287445.363 1112290.115 1034741.341 1585804.166 1274361.406 0.990199485 1.286417377 1.309349222 0.744171176 0.963470618 1.010267069 0.872821564 0.811968517 1.244391236 1 20.28134305 -5.248632474 24.96128264 0.941658258 1.204431566 0.359797262 0.149805825 781.336629 1522860.597 0.039793003 0.068339348 5.64E-06 5.248632474 0.262773308 S(ph)PEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSR ddPTM_HeLa_A485_30min_R1 1 SPEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSR 33 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.991)PEPNKT(0.005)S(0.005)VLGGGEDGIEPVSPPEGMTEPGHSR 102.39 7.87E-05 222070000 54978 81867 71846 49797 91537 94434 87636 75810 75477 87957 TRUE FALSE FALSE 67207.66643 91440.6335 98424.82516 52517.28402 82423.25487 99378.41822 68911.85268 57217.47863 90624.54158 66030.93863 1.017820855 1.384814988 1.490586492 0.795343594 1.248252056 1.505028102 1.043629761 0.866525296 1.372455753 1 16.01085453 S(ph)PEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSR ddPTM_HeLa_A486_30min_R1 2 SPEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSR 33 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.97)PEPNKT(0.015)S(0.015)VLGGGEDGIEPVSPPEGMTEPGHSR;S(0.979)PEPNKT(0.011)S(0.011)VLGGGEDGIEPVSPPEGMTEPGHSR ; 117.93 2.14E-05 410850000 208362 199029 129570 60812 194289 194668 225484 216900 158316 256220 TRUE FALSE FALSE 193756.8998 183257.2172 179742.974 141573.4093 169919.4619 170651.8414 169065.5183 167516.6049 172038.9583 192060.8443 1.008830824 0.954162301 0.93586475 0.737127913 0.884716833 0.888530101 0.880270619 0.872205917 0.89575238 1 17.5512039 -5.010255243 23.61349299 0.87209721 0.972375893 0.306914206 0.061067348 261.1826723 601403.9334 0.015828168 0.030011337 9.77E-06 5.010255243 0.100278683 S(ph)PERPTGDLR ddPTM_HeLa_A485_30min_R1 5 SPERPTGDLR 10 1 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR ;;;; 112.08 0.00031498 8486820000 4675070 7009940 5981420 5092390 7601990 6616970 7392650 8214420 5864540 6448320 TRUE FALSE FALSE 5715023.193 7829691.505 8194196.166 5370574.371 6845109.183 6963424.317 5813149.935 6199820.615 7041499.385 4840872.497 1.180577096 1.617413289 1.692710595 1.109422811 1.414023854 1.438464724 1.200847562 1.280723799 1.454593028 1 22.20683566 -13.03631067 0.160917702 5.32E-18 1.490500834 0.283891623 0.178856519 120.9948503 1.480688424 40.13354874 0.792215354 9.20E-14 13.03631067 1.490500834 S(ph)PERPTGDLR ddPTM_HeLa_A486_30min_R1 7 SPERPTGDLR 10 1 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR;S(1)PERPTGDLR ;;;;;; 134.04 2.71E-05 15147385000 6764539 7298738 5982112 2365802 8217490 6169529 7292171 7646090 6157978 7439293 TRUE FALSE FALSE 6290379.748 6720359.419 8298545.973 5507706.617 7186775.779 5408395.239 5467592.687 5905242.22 6691756.491 5576445.611 1.128026737 1.205133142 1.488142547 0.987673332 1.288773581 0.96986425 0.980479873 1.058961681 1.200003902 1 22.41091442 -5.291623532 24.99697676 1.073139551 1.26690419 0.34408608 0.129131004 793.5204907 657151.327 0.036589553 0.054278388 5.11E-06 5.291623532 0.193764639 S(ph)PESCSKPEK ddPTM_HeLa_A485_30min_R1 6 SPESCSKPEK 10 1 Q03111 Q03111 MLLT1 Protein ENL 1 0 S(1)PESCSKPEK;S(1)PESCSKPEK;S(0.994)PES(0.006)CS(0.001)KPEK;S(0.998)PES(0.002)CSKPEK;S(0.996)PES(0.004)CSKPEK;S(0.862)PES(0.069)CS(0.069)KPEK ;;;;; 145.23 7.24E-05 10239800000 7561280 6193600 2986020 10917390 5625960 7487970 11798010 12610100 6157030 14040390 TRUE FALSE FALSE 9243260.65 6917887.643 4090673.057 11513779.37 5065819.668 7880028.531 9277268.783 9517453.203 7392689.445 10540379.17 0.876938154 0.656322466 0.388095437 1.092349638 0.480610762 0.747603896 0.880164616 0.902951692 0.701368454 1 23.32942343 -6.640456698 4.9242395 0.862046527 0.693531594 0.147281996 0.194954602 0.430439786 16.73655844 0.074350747 0.056689787 2.29E-07 6.640456698 -0.168514933 S(ph)PESCSKPEK ddPTM_HeLa_A486_30min_R1 6 SPESCSKPEK 10 1 Q03111 Q03111 MLLT1 Protein ENL 1 0 S(0.997)PES(0.002)CS(0.001)KPEK;S(0.999)PES(0.001)CSKPEK;S(1)PESCSKPEK;S(1)PESCSKPEK;S(0.999)PES(0.001)CSKPEK;S(0.995)PES(0.004)CS(0.001)KPEK ;;;;; 138.45 0.00035483 9931290000 11630910 5926810 4139423 5350620 5999130 14619880 12753590 10229940 9166220 17264770 TRUE FALSE FALSE 10815643.27 5457147.991 5742318.443 12456513.77 5246663.176 12816227.85 9562506.888 7900805.98 9960755.33 12941559.22 0.835729535 0.421676237 0.443711484 0.962520324 0.405411982 0.99031559 0.738899133 0.61049877 0.769671966 1 23.62550811 -5.243650444 24.92312371 0.757378297 0.55250281 0.183836373 0.202564407 1373.38881 1924178.61 0.052502355 0.090680676 5.71E-06 5.243650444 -0.204875487 S(ph)PESDRPR ddPTM_HeLa_A485_30min_R1 4 SPESDRPR 8 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 S(1)PESDRPR;S(0.999)PES(0.001)DRPR;S(0.976)PES(0.024)DRPR;S(0.999)PES(0.001)DRPR ;;; 130.98 0.00026264 6190870000 419042 541968 410348 437929 385206 429304 501068 469773 387475 488781 TRUE FALSE FALSE 512256.4472 605346.4431 562152.8012 461851.9524 346853.5381 451781.6936 394010.7285 354560.4352 465237.6784 366936.892 1.396034191 1.64972903 1.532014942 1.258668622 0.945267553 1.231224506 1.073783359 0.966270884 1.26789562 1 18.48517244 -5.411029418 3.2948902 1.086328379 1.539288584 0.749295797 0.114736331 0.115654651 2.347758636 0.032379408 0.049944272 3.88E-06 5.411029418 0.452960205 S(ph)PESDRPR ddPTM_HeLa_A486_30min_R1 3 SPESDRPR 8 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 S(1)PESDRPR;S(0.999)PES(0.001)DRPR;S(0.998)PES(0.002)DRPR ;; 130.98 0.00026264 5257600000 623205.1 500914.7 379711.6 130396.3 373513.7 492791 441002 423487.1 466824.5 619421 TRUE FALSE FALSE 579521.6407 461220.3949 526746.1005 303569.1763 326664.1289 431995.4568 330658.6352 327068.332 507289.2235 464313.9498 1.248124552 0.993337364 1.13446107 0.653801542 0.703541492 0.930395171 0.71214452 0.70441203 1.092556499 1 18.8247411 -5.244605994 24.57509303 0.810043624 1.112110682 0.453652023 0.148318726 578.1986401 844111.5829 0.039232016 0.067705973 5.69E-06 5.244605994 0.302067058 S(ph)PESQVIGENTK ddPTM_HeLa_A485_30min_R1 1 SPESQVIGENTK 12 0 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.999)PES(0.001)QVIGENTK 160.04 3.28E-10 129870000 190250 150600 163440 233320 188470 144720 183790 128920 150280 270050 TRUE FALSE FALSE 232570.4561 168211.36 223903.2573 246065.6808 169705.265 152297.3154 144521.7651 97302.16786 180439.8176 202731.5049 1.147184579 0.829724813 1.104432473 1.213751562 0.837093698 0.75122668 0.712872748 0.479955831 0.8900433 1 17.62921078 -5.944635969 5.658656157 0.736953744 1.057820398 0.457050099 0.156968601 0.170990465 11.55085141 0.049097793 0.055532814 1.14E-06 5.944635969 0.320866654 S(ph)PESQVIGENTK ddPTM_HeLa_A486_30min_R1 1 SPESQVIGENTK 12 0 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(1)PESQVIGENTK 145.46 1.92E-07 167030000 214870 247500 121740 51926 146140 224810 197140 206020 199530 290500 TRUE FALSE FALSE 199808.7226 227887.1986 168880.9883 120886.3522 127809.7585 197075.2279 147813.4869 159113.7434 216825.4211 217756.9092 0.917576959 1.046521093 0.775548243 0.55514359 0.586937788 0.905023995 0.678800445 0.730694351 0.995722349 1 17.73235897 -9.905484343 12.54398068 1.000024877 0.789832966 0.124427947 0.158158762 0 0 0.164685137 0.039942013 1.24E-10 9.905484343 -0.210191911 S(ph)PESQVIGENTKQP ddPTM_HeLa_A485_30min_R1 2 SPESQVIGENTKQP 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.999)PES(0.001)QVIGENTKQP;S(0.998)PES(0.002)QVIGENTKQP ; 162.29 1.02E-10 556570000 691880 825670 535970 642470 647920 803580 935070 902810 547030 816140 TRUE FALSE FALSE 845786.319 922224.9241 734247.6066 677566.5093 583410.8098 845654.2062 735284.6557 681394.4319 656813.9033 612691.3179 1.380444433 1.505203187 1.198397276 1.105885606 0.952210016 1.380228806 1.200089889 1.112133324 1.07201438 1 19.22480088 -4.868627027 4.749545739 1.131350221 1.441186317 0.556587247 0.113725427 0.152720706 5.647863202 0.03084051 0.068346203 1.35E-05 4.868627027 0.309836096 S(ph)PESQVIGENTKQP ddPTM_HeLa_A486_30min_R1 5 SPESQVIGENTKQP 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(1)PESQVIGENTKQP;S(1)PESQVIGENTKQP;S(0.999)PES(0.001)QVIGENTKQP;S(0.999)PES(0.001)QVIGENTKQP;S(0.999)PES(0.001)QVIGENTKQP ;;;; 117.4 0.00063719 648070000 1158160 1103010 499710 300896 842330 909940 1004740 966980 725610 1389850 TRUE FALSE FALSE 1076978.965 1015603.471 693211.0947 700501.0944 736677.117 797680.8544 753343.4249 746819.763 788506.459 1041822.514 1.033745144 0.974833484 0.665383101 0.672380454 0.70710424 0.765659068 0.723101503 0.716839724 0.756852966 1 19.99067809 -4.682948966 5.793511594 0.736260854 1.01548832 0.552413618 0.090771432 0.125797322 6.92171875 0.021591033 0.05857299 2.08E-05 4.682948966 0.279227466 S(ph)PESRPSVVYPSTK ddPTM_HeLa_A486_30min_R1 1 SPESRPSVVYPSTK 14 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 S(0.938)PES(0.042)RPS(0.02)VVYPSTK 70.837 0.0048651 542270000 258510 289870 113150 149490 182310 353000 365450 349500 223050 533450 TRUE FALSE FALSE 240389.7839 266899.6455 156964.7103 348020.2748 159442.9798 309450.449 274010.5447 269926.4795 242384.1536 399870.6478 0.601168866 0.667464959 0.392538715 0.870332135 0.398736393 0.773876379 0.685247957 0.675034492 0.606156403 1 18.60917386 -14 0.227831934 2.955594761 0.589305618 0.393659485 0.139159989 156.3454927 1.565580009 140.7646737 0.230768046 1.00E-14 14 -2.366289143 S(ph)PFEGAVTESQSLFSDNFR ddPTM_HeLa_A485_30min_R1 6 SPFEGAVTESQSLFSDNFR 19 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6;O95628-5 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 0 S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR ;;;;; 231.83 1.74E-35 723021000 104192.8 132351.7 156055.3 133364.5 179826 135418.1 159377 152906 124896 189391 TRUE FALSE FALSE 127370.1289 147829.08 213786.6495 140649.8649 161921.892 142508.3823 125324.802 115405.5638 149961.4816 142179.3092 0.895841523 1.039736941 1.503641076 0.989242849 1.138856933 1.002314494 0.881455978 0.811690283 1.054734915 1 17.117352 -6.438065644 3.172726279 0.921890279 1.124579429 0.207523556 0.161202582 0.387807384 7.529340492 0.063920997 0.053704246 3.65E-07 6.438065644 0.20268915 S(ph)PFEGAVTESQSLFSDNFR ddPTM_HeLa_A486_30min_R1 6 SPFEGAVTESQSLFSDNFR 19 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6;O95628-5 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 0 S(0.999)PFEGAVT(0.001)ESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR ;;;;; 298.33 4.10E-79 863289000 135353.8 174044.2 154916.7 69635.7 207644 171254.9 195379 198873 160080.6 190814 TRUE FALSE FALSE 125866.1976 160252.3037 214904.5951 162115.4288 181599.3533 150127.2116 146493.1077 153593.9593 173956.5153 143032.9324 0.879980543 1.120387459 1.502483319 1.133413306 1.269633156 1.049598922 1.024191459 1.07383633 1.216199041 1 17.12598783 -6.278100255 24.4453302 1.074344057 1.19299875 0.107831631 0.154024186 1446.164068 2121846.981 0.056264887 0.049768037 5.27E-07 6.278100255 0.118654692 S(ph)PFEHSVEHK ddPTM_HeLa_A485_30min_R1 3 SPFEHSVEHK 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(1)PFEHSVEHK;S(0.998)PFEHS(0.002)VEHK;S(1)PFEHSVEHK ;; 138.89 1.72E-05 3999700000 3260930 3058610 2475480 3706770 3425130 2879020 3748790 3179650 3069830 4948600 TRUE FALSE FALSE 3986312.628 3416287.833 3391263.065 3909261.459 3084112.031 3029761.035 2947830.392 2399835.852 3685916.723 3715005.092 1.073030192 0.919591696 0.912855563 1.052289664 0.830177067 0.81554694 0.793492961 0.645984539 0.992170032 1 21.82493276 -5.782658023 23.13030803 0.824356792 0.978981978 0.287105702 0.106776188 116.0551124 126509.7699 0.032058878 0.036401008 1.65E-06 5.782658023 0.154625186 S(ph)PFEHSVEHK ddPTM_HeLa_A486_30min_R1 3 SPFEHSVEHK 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(1)PFEHSVEHK;S(0.999)PFEHS(0.001)VEHK;S(1)PFEHSVEHK ;; 182.1 1.05E-09 3800300000 5284550 5364100 2876090 801090 3935220 4976260 5144390 4288500 4205200 5156220 TRUE FALSE FALSE 4914130.334 4939029.18 3989789.072 1864978.005 3441628.013 4362339.636 3857209.21 3312102.167 4569710.122 3865068.951 1.27142113 1.277863149 1.032268537 0.482521277 0.890444144 1.128657649 0.997966468 0.856932233 1.182310117 1 21.88206272 -4.850543079 4.533595153 0.925597892 1.275129472 0.355127263 0.179658191 0.220795618 7.984117779 0.05011491 0.113188409 1.41E-05 4.850543079 0.34953158 S(ph)PFLKPDER ddPTM_HeLa_A485_30min_R1 7 SPFLKPDER 9 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER ;;;;;; 136.96 8.30E-05 3743080000 8671510 7502400 5595000 10935520 8665280 8693630 11158710 9686050 7196970 14392710 TRUE FALSE FALSE 10600457.48 8379740.418 7664823.327 11532899.77 7802534.298 9148815.024 8774560.45 7310531.05 8641335.864 10804872.28 0.981081239 0.775552011 0.709385834 1.067379556 0.7221311 0.846730511 0.812092936 0.676595786 0.799762889 1 23.36517868 S(ph)PFLKPDER ddPTM_HeLa_A486_30min_R1 8 SPFLKPDER 9 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER;S(1)PFLKPDER ;;;;;;; 138.24 7.63E-05 5279318000 12017420 11583060 6002640 4406819 9286020 11743500 13309210 12258910 9419980 15981650 TRUE FALSE FALSE 11175060.92 10665176.14 8327022.964 10259297.34 8121280.783 10294706.37 9979104.888 9467823.803 10236511.45 11979740.82 0.932829941 0.890267686 0.69509208 0.856387254 0.677917904 0.859342996 0.832998396 0.790319586 0.854485219 1 23.51409336 -8.12122947 4.566355177 0.999989413 0.814149086 0.343281262 0.075748858 0.939156896 33.74973578 0.072767275 0.019012924 7.56E-09 8.12122947 -0.185840327 S(ph)PFNDRFPLK ddPTM_HeLa_A485_30min_R1 1 SPFNDRFPLK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 S(1)PFNDRFPLK 115.12 0.00024449 171120000 165630 141470 120910 214330 174080 128790 169430 129900 154210 258020 TRUE FALSE FALSE 202473.8221 158013.6859 165639.6405 226038.3052 156747.984 135533.2453 133229.8964 98041.82132 185158.5325 193700.3625 1.045293976 0.815763501 0.855133353 1.166948282 0.809229172 0.699705687 0.687814388 0.506151976 0.955901838 1 17.56346713 -5.987847404 24.95229185 0.73620125 0.956030766 0.249493384 0.160238361 279.8002003 574495.5697 0.048611189 0.055084168 1.03E-06 5.987847404 0.219829515 S(ph)PFNDRFPLK ddPTM_HeLa_A486_30min_R1 2 SPFNDRFPLK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 S(1)PFNDRFPLK;S(1)PFNDRFPLK ; 121.24 0.0001021 223295000 396228 488900 257789 170564 314992 416286 438185 387069 353552 493030 TRUE FALSE FALSE 368454.4633 450157.7835 357611.8046 397081.6118 275482.7662 364928.8658 328546.4784 298941.8384 384198.172 369572.0789 0.99697592 1.218051387 0.967637506 1.074436178 0.745410116 0.987436245 0.888991612 0.808886427 1.039575752 1 18.49549624 -5.701815201 24.99981343 0.904810119 1.068357288 0.342411815 0.103244867 77.98708037 32698.49385 0.028915552 0.037329804 1.99E-06 5.701815201 0.163547168 S(ph)PFTVGVAAPLDLSK ddPTM_HeLa_A486_30min_R1 1 SPFTVGVAAPLDLSK 15 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 S(1)PFTVGVAAPLDLSK 134.9 1.50E-05 0 26582 29545 22351 16901 28080 32122 36233 39109 21969 37005 TRUE FALSE FALSE 24718.73907 27203.7466 31005.90578 39346.38213 24557.94456 28159.11423 27167.12017 30204.73444 23873.29061 27738.70714 0.891128016 0.980714294 1.117784821 1.418464889 0.885331261 1.015155973 0.979393886 1.088902028 0.860649002 1 14.75961293 S(ph)PGAFDMSGVR ddPTM_HeLa_A485_30min_R1 2 SPGAFDMSGVR 11 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 S(1)PGAFDMSGVR;S(1)PGAFDMSGVR ; 181.87 1.85E-10 756860000 200468 231082 266030 239866 260390 238556 254540 224434 219382 296190 TRUE FALSE FALSE 245061.415 258105.0298 364445.5674 252969.2722 234464.6573 251046.4233 200155.4496 169391.2096 263409.9551 222355.284 1.102116445 1.160777586 1.639023642 1.137680507 1.054459571 1.129032865 0.900160527 0.761804292 1.184635464 1 17.76250716 -5.645961485 3.254321685 0.991048687 1.298045221 0.361931985 0.173094871 0.265613043 5.559529807 0.055386122 0.073435592 2.26E-06 5.645961485 0.306996533 S(ph)PGAFDMSGVR ddPTM_HeLa_A486_30min_R1 4 SPGAFDMSGVR 11 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR;S(1)PGAFDMSGVR ;;; 160.62 7.60E-08 1562970000 600810 686200 510160 220251 659530 594360 658340 653690 551280 708730 TRUE FALSE FALSE 558696.3216 631823.0129 707707.6146 512755.4589 576805.5975 521033.9062 493616.3688 504859.057 599065.3943 531259.3949 1.051645066 1.189292874 1.332131952 0.965169677 1.085732512 0.980752362 0.929143792 0.950306125 1.127632565 1 19.01905692 -5.283016049 24.99117514 1.002589403 1.190850271 0.501010749 0.084794582 629.4330024 729039.2923 0.024268455 0.036030327 5.21E-06 5.283016049 0.188260868 S(ph)PGALETPSAAGSQGNTASQGK ddPTM_HeLa_A485_30min_R1 2 SPGALETPSAAGSQGNTASQGK 22 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 S(1)PGALETPSAAGSQGNTASQGK;S(1)PGALETPSAAGSQGNTASQGK ; 413.03 7.93E-176 1277480000 709200 643110 554570 842320 755470 718490 877730 882970 666230 1016450 TRUE FALSE FALSE 866959.0933 718316.1202 759728.5206 888333.8087 680252.7542 756109.0254 690195.8151 666420.2231 799936.25 763067.7214 1.136149609 0.941353041 0.995623978 1.164161167 0.891471013 0.990880631 0.904501391 0.873343485 1.048316195 1 19.54145157 -5.787508046 24.99937396 0.944713191 1.046345888 0.306789321 0.078107885 288.7262573 276881.7191 0.023843139 0.027043928 1.63E-06 5.787508046 0.101632697 S(ph)PGALETPSAAGSQGNTASQGK ddPTM_HeLa_A486_30min_R1 2 SPGALETPSAAGSQGNTASQGK 22 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 S(0.529)PGALET(0.463)PS(0.008)AAGSQGNTASQGK;S(0.609)PGALET(0.382)PS(0.009)AAGSQGNTASQGK ; 402.88 2.14E-175 1742530000 507150 506620 297180 180920 455660 479310 552960 508020 414200 612140 TRUE FALSE FALSE 471601.4039 466473.5861 412256.0548 421190.9032 398506.8739 420177.6055 414603.5594 392354.936 450103.1895 458856.1596 1.027776121 1.016600903 0.898442891 0.917914894 0.868478859 0.915706582 0.903558884 0.855071743 0.98092437 1 18.80768245 -4.755497894 22.57214201 0.910036619 1.022188762 0.484193891 0.04266111 29.62407179 112531.8249 0.010166073 0.025289781 1.76E-05 4.755497894 0.112152144 S(ph)PGAPCQECSR ddPTM_HeLa_A486_30min_R1 2 SPGAPCQECSR 11 0 Q9NWF9-3;Q9NWF9;Q9NWF9-1 Q9NWF9-3 RNF216 E3 ubiquitin-protein ligase RNF216 1 0 S(1)PGAPCQECSR;S(1)PGAPCQECSR ; 113.61 0.0004255 316450000 132557 141095 157530 65356 155415 211401 158178 160214 152355 166839 TRUE FALSE FALSE 123265.4388 129914.1183 218529.8348 152152.0709 135921.4015 185320.494 118600.1914 123736.7696 165561.2541 125061.4285 0.98563914 1.03880245 1.747379968 1.216618687 1.08683711 1.481835737 0.948335493 0.989407935 1.323839461 1 16.93227738 -6.781757896 24.98638602 1.064513093 1.261862706 0.144924441 0.230954926 516.5154909 635171.1566 0.099319849 0.06705138 1.65E-07 6.781757896 0.197349613 S(ph)PGAPGPLTLK ddPTM_HeLa_A485_30min_R1 6 SPGAPGPLTLK 11 0 Q15942;Q15942-2;H0Y2Y8;C9JJK5 Q15942 ZYX Zyxin 1 0 S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK ;;;;; 160.22 7.77E-08 31875260000 25795100 26126600 19708440 24481500 33716000 27170000 35630500 37090300 23475300 32470500 TRUE FALSE FALSE 31533131 29181878.6 26999412.09 25818862.35 30359116.66 28592579.19 28017752.6 27993845.77 28186577.38 24376201.93 1.293603126 1.197146245 1.107613572 1.059183151 1.245440809 1.172971051 1.149389584 1.14840884 1.156315388 1 24.53897002 -14 0.188841097 0.294492956 1.197247811 0.434745914 0.060604479 146.6377531 1.431643608 38.94327438 0.179274335 1.00E-14 14 0.902754855 S(ph)PGAPGPLTLK ddPTM_HeLa_A486_30min_R1 8 SPGAPGPLTLK 11 0 Q15942;Q15942-2;H0Y2Y8;C9JJK5 Q15942 ZYX Zyxin 1 0 S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK ;;;;;;; 162.34 6.86E-08 38836080000 22257200 22782460 14912490 8816450 24250760 22595240 27597960 27104490 16676560 24030580 TRUE FALSE FALSE 20697085.22 20977094.9 20687005.5 20525141.16 21209003.55 19807669.02 20692658.51 20933389.31 18122097.65 18013166.36 1.148997617 1.16454234 1.148438042 1.139452151 1.177416737 1.099621723 1.148751868 1.162116027 1.006047315 1 24.10254846 -7.765510925 24.99353683 1.003023547 1.148207751 0.900021193 0.019416351 29.42604664 180622.2245 0.016377662 0.004830914 1.72E-08 7.765510925 0.145184204 S(ph)PGASNFSTLPK ddPTM_HeLa_A485_30min_R1 4 SPGASNFSTLPK 12 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 S(1)PGASNFSTLPK;S(1)PGASNFSTLPK;S(1)PGASNFSTLPK;S(1)PGASNFSTLPK ;;; 181.76 7.57E-13 4491040000 1274900 1265350 962190 1396020 1490900 1251660 1710450 1704230 1024890 1637930 TRUE FALSE FALSE 1558497.107 1413321.675 1318144.121 1472281.038 1342460.761 1317194.982 1344998.384 1286264.92 1230576.022 1229624.195 1.267458068 1.14939319 1.071989415 1.197342281 1.091765083 1.071217521 1.093828822 1.046063444 1.00077408 1 20.22978603 -1 0.182574254 0.982361731 2.048896349 0.726422849 0.04198106 31.541885 0.358471564 0.095432931 9.374226912 0.1 1 1.066534619 S(ph)PGASNFSTLPK ddPTM_HeLa_A486_30min_R1 5 SPGASNFSTLPK 12 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 S(1)PGASNFSTLPK;S(0.992)PGAS(0.008)NFSTLPK;S(0.962)PGAS(0.038)NFSTLPK;S(1)PGASNFSTLPK;S(0.999)PGAS(0.001)NFSTLPK ;;;; 212.69 8.96E-18 4739900000 1539428 1590066 946161 560826 1512780 1588504 1791111 1657771 1216489 1773048 TRUE FALSE FALSE 1431522.047 1464063.379 1312539.878 1305631.271 1323033.026 1392530.527 1342956.083 1280332.732 1321935.246 1329065.24 1.077089373 1.101573749 0.987566177 0.982368082 0.995461311 1.047751822 1.010451589 0.963333246 0.994635332 1 20.34198049 -4.762126467 24.99993496 0.998002449 1.089331584 0.748803518 0.021229263 8.704532143 316775.1621 0.006015443 0.013844148 1.73E-05 4.762126467 0.091329135 S(ph)PGDFTSAAQLASTPFHK ddPTM_HeLa_A485_30min_R1 2 SPGDFTSAAQLASTPFHK 18 0 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 S(1)PGDFTSAAQLASTPFHK;S(0.999)PGDFT(0.001)SAAQLASTPFHK ; 216.38 2.11E-34 768430000 444250 381300 373720 500500 615910 364000 466370 385910 436530 736040 TRUE FALSE FALSE 543071.8799 425889.7181 511974.5798 527841.0477 554587.8378 383058.4771 366726.2396 291264.9674 524137.5669 552558.7738 0.982830978 0.770759127 0.926552258 0.955266793 1.003672123 0.693244765 0.663687298 0.527120338 0.948564373 1 19.0757684 -6.270053299 24.80992057 0.730541115 0.920545668 0.224103338 0.142073861 737.7790048 2124953.732 0.048470008 0.043411706 5.37E-07 6.270053299 0.190004553 S(ph)PGDFTSAAQLASTPFHK ddPTM_HeLa_A486_30min_R1 2 SPGDFTSAAQLASTPFHK 18 0 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 S(1)PGDFTSAAQLASTPFHK;S(1)PGDFTSAAQLASTPFHK ; 244.86 1.17E-45 956350000 495970 576510 416210 97733 567470 543920 554380 555170 511560 477710 TRUE FALSE FALSE 461205.0642 530825.248 577377.6585 227527.3632 496292.6212 476816.6806 415668.2604 428769.9103 555902.4327 358088.3066 1.287964604 1.482386434 1.612389033 0.635394563 1.38595037 1.331561717 1.160798196 1.197385959 1.552417162 1 18.44995588 S(ph)PGDGHNAPVEGPEGEYVELLEVTLPVR ddPTM_HeLa_A485_30min_R1 4 SPGDGHNAPVEGPEGEYVELLEVTLPVR 28 0 Q8TER5-4;Q8TER5;Q8TER5-3;G3V485;G3V3N2;G3V5C1 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 S(1)PGDGHNAPVEGPEGEYVELLEVTLPVR;S(1)PGDGHNAPVEGPEGEYVELLEVTLPVR;S(0.997)PGDGHNAPVEGPEGEY(0.003)VELLEVTLPVR;S(1)PGDGHNAPVEGPEGEYVELLEVTLPVR ;;; 174.06 1.79E-14 86142000 10292.8 13544.9 15746.9 14164 17096.6 13843.5 15983.6 18273.1 14109.6 17701.7 TRUE FALSE FALSE 12582.39785 15128.85823 21572.33359 14937.74345 15394.40247 14568.32425 12568.57329 13791.59357 16941.2673 13288.99197 0.946828614 1.138450401 1.623323548 1.124068966 1.158432672 1.096270078 0.945788312 1.037820898 1.274834641 1 13.69794405 -5.914540609 2.23162885 1.068043381 1.235069696 0.116840519 0.178077698 0.643262913 6.520124637 0.065106441 0.075321908 1.22E-06 5.914540609 0.167026316 S(ph)PGDGHNAPVEGPEGEYVELLEVTLPVR ddPTM_HeLa_A486_30min_R1 2 SPGDGHNAPVEGPEGEYVELLEVTLPVR 28 0 Q8TER5-4;Q8TER5;Q8TER5-3;G3V485;G3V3N2;G3V5C1 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 S(1)PGDGHNAPVEGPEGEYVELLEVTLPVR;S(1)PGDGHNAPVEGPEGEYVELLEVTLPVR ; 126.68 4.85E-06 37980000 8487.3 5695.2 5751.1 3266.9 6886.2 7545 7025 6717.4 4319.8 7860.3 TRUE FALSE FALSE 7892.384098 5243.89161 7978.07994 7605.5083 6022.468585 6614.174612 5267.270697 5187.99466 4694.243742 5892.029718 1.339501747 0.889997482 1.354046113 1.290812956 1.022138189 1.122563009 0.893965399 0.880510606 0.796710805 1 12.52454899 -6.572174806 1.446854385 0.871060455 1.19087003 0.485323058 0.140729981 0.354114362 1.508801239 0.073862642 0.051689089 2.68E-07 6.572174806 0.319809575 S(ph)PGDPAKPASSPR ddPTM_HeLa_A485_30min_R1 1 SPGDPAKPASSPR 13 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3;H7C3V8 C9JWC4 HJURP Holliday junction recognition protein 1 0 S(0.783)PGDPAKPAS(0.109)S(0.109)PR 52.823 0.023097 483960000 618650 698790 658740 672960 968940 772170 854220 998240 750820 752980 TRUE FALSE FALSE 756266.5582 780507.4118 902435.3385 709722.1008 872468.9314 812599.6272 671708.9187 753420.0748 901502.6871 565275.9436 1.337871471 1.380754693 1.596450988 1.255532115 1.54343899 1.437527346 1.188284989 1.332835907 1.594801083 1 19.10859578 -10.65022078 3.134985267 0.967687768 1.404038758 0.463936314 0.131362346 15989962.14 23477793.01 4266092.444 0.032524876 2.24E-11 10.65022078 0.43635099 S(ph)PGDPAKPASSPR ddPTM_HeLa_A486_30min_R1 1 SPGDPAKPASSPR 13 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3;H7C3V8 C9JWC4 HJURP Holliday junction recognition protein 1 0 S(0.63)PGDPAKPAS(0.156)S(0.214)PR 54.281 0.021395 288200000 626320 685420 463410 253060 696060 618560 710870 655150 583760 754140 TRUE FALSE FALSE 582418.2023 631104.8229 642854.7626 589136.4689 608753.6643 542248.3563 533002.8072 505986.6468 634360.7868 565298.4354 1.030284476 1.116409994 1.137195369 1.042168936 1.076871306 0.959224937 0.942869773 0.895078803 1.12216972 1 19.10865318 -6.25060011 16.61239391 0.974748569 1.083587936 0.373045553 0.062071003 8.084551685 12389.20146 0.020479673 0.020074247 5.62E-07 6.25060011 0.108839367 S(ph)PGEPGGAAPER ddPTM_HeLa_A485_30min_R1 2 SPGEPGGAAPER 12 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 S(1)PGEPGGAAPER;S(1)PGEPGGAAPER ; 129.16 3.23E-05 6651400000 517650 748680 747200 555190 796460 541380 784490 947900 691170 685130 TRUE FALSE FALSE 632799.4566 836231.6133 1023620.374 585518.6239 717161.6459 569725.8197 616877.3028 715426.0388 829881.4792 514339.6999 1.230314239 1.625835248 1.990164037 1.138388936 1.394334612 1.107683929 1.199357745 1.390960175 1.613489061 1 18.97236199 -5.291123573 24.99817946 1.276040821 1.616477801 0.316558546 0.236493876 840.4167411 707744.8863 0.067355729 0.099921738 5.12E-06 5.291123573 0.34043698 S(ph)PGEPGGAAPER ddPTM_HeLa_A486_30min_R1 1 SPGEPGGAAPER 12 0 Q96EB6-2;Q96EB6 Q96EB6-2 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 S(1)PGEPGGAAPER 136.99 1.18E-05 2953800000 361710 331320 299050 98079 382450 314360 454820 434920 296600 345360 TRUE FALSE FALSE 336355.9969 305064.9966 414850.1688 228332.8686 334479.5548 275577.4594 341019.2254 335898.2102 322309.5268 258879.6081 1.29927575 1.178404892 1.602482992 0.882004073 1.29202743 1.06450045 1.317288866 1.297507412 1.245017053 1 17.9819218 -10.66666392 2.438718258 0.963081382 1.24028656 0.145442789 0.175973151 13362631.87 10320884.25 3066061.587 0.043686873 2.15E-11 10.66666392 0.277205178 S(ph)PGETSKPRPFAGGGYR ddPTM_HeLa_A485_30min_R1 6 SPGETSKPRPFAGGGYR 17 2 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 S(0.977)PGET(0.012)S(0.012)KPRPFAGGGYR;S(0.988)PGET(0.01)S(0.003)KPRPFAGGGYR;S(0.998)PGET(0.001)S(0.001)KPRPFAGGGYR;S(1)PGETSKPRPFAGGGYR;S(0.999)PGET(0.001)SKPRPFAGGGYR;S(0.999)PGETSKPRPFAGGGYR ;;;;; 113.63 5.50E-05 7834900000 2152190 2030750 2088090 2465250 2787230 2152680 2753440 2576890 2247410 3195660 TRUE FALSE FALSE 2630937.241 2268228.547 2860561.384 2599920.365 2509723.595 2265390.996 2165145.05 1944903.687 2698444.573 2399040.774 1.096662162 0.945473112 1.192377143 1.083733296 1.046136282 0.944290327 0.902504482 0.810700555 1.124801463 1 21.19402625 -6.185417177 3.433431681 0.940402407 1.076800871 0.277485988 0.093242728 0.306450573 7.033452104 0.032260786 0.031689383 6.53E-07 6.185417177 0.136398465 S(ph)PGETSKPRPFAGGGYR ddPTM_HeLa_A486_30min_R1 4 SPGETSKPRPFAGGGYR 17 2 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 S(0.965)PGET(0.006)S(0.029)KPRPFAGGGYR;S(0.965)PGET(0.028)S(0.007)KPRPFAGGGYR;S(0.992)PGET(0.007)S(0.001)KPRPFAGGGYR;S(1)PGETSKPRPFAGGGYR ;;; 121.63 2.53E-05 5095220000 2113030 2351290 1704960 833874 2431680 2451590 2635970 2511120 1888030 2675080 TRUE FALSE FALSE 1964917.509 2164965.217 2365166.172 1941300.814 2126676.02 2149137.752 1976422.426 1939392.793 2051685.961 2005222.556 0.979899963 1.079663307 1.179503076 0.96812237 1.06056857 1.071770186 0.985637439 0.967170845 1.023171196 1 20.93533094 -6.764905591 24.965376 0.991259094 1.059383628 0.229290142 0.055989002 130.8559435 942473.4605 0.023138221 0.016314111 1.72E-07 6.764905591 0.068124534 S(ph)PGEYINIDFGEPGAR ddPTM_HeLa_A485_30min_R1 5 SPGEYINIDFGEPGAR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR ;;;; 235.95 2.50E-41 890937000 225903 291563 282090 277804 293735 228790 305462 263587 256709 366669 TRUE FALSE FALSE 276154.343 325658.7566 386446.8297 292979.7291 264489.712 240769.0906 240197.5483 198941.875 308228.1416 275265.1663 1.003230255 1.183072893 1.403907494 1.064354538 0.960854276 0.874680563 0.872604229 0.722728116 1.119749897 1 18.07046253 -5.658314254 3.044582033 0.902756489 1.199339524 0.451280092 0.132776447 0.211915378 3.932593924 0.041477182 0.054947683 2.20E-06 5.658314254 0.296583035 S(ph)PGEYINIDFGEPGAR ddPTM_HeLa_A486_30min_R1 5 SPGEYINIDFGEPGAR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR;S(1)PGEYINIDFGEPGAR ;;;; 186.85 7.72E-18 1053997000 419487 452003 330196 159962 369396 402254 412104 395944 400150 471528 TRUE FALSE FALSE 390083.1275 416184.6361 458056.7342 372399.62 323062.9092 352627.9913 308991.2204 305796.1946 434835.3242 353454.3197 1.103630953 1.177477861 1.295943234 1.053600421 0.914016016 0.997662135 0.874204114 0.865164683 1.230244759 1 18.43116425 -5.487205421 5.854259052 0.969843085 1.189922863 0.444278306 0.105662221 0.169519658 16.55890023 0.030123754 0.043618995 3.26E-06 5.487205421 0.220079778 S(ph)PGFASPK ddPTM_HeLa_A485_30min_R1 1 SPGFASPK 8 0 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(1)PGFASPK 82.261 0.0074479 194980000 285340 243410 191780 280200 266220 229900 294230 236400 197650 344710 TRUE FALSE FALSE 348812.8986 271874.6821 262727.4026 295506.6165 239714.202 241937.2085 231365.3569 178422.5293 237316.542 258780.1409 1.34791216 1.050601028 1.015253341 1.141921538 0.926323794 0.934914123 0.894061484 0.689475354 0.917058555 1 17.98136738 -1 0.367549891 0.855943113 6.855142269 0.634718175 0.09884791 41.10774406 0.570326963 0.080582636 173.7044322 0.1 1 5.999199156 S(ph)PGFASPK ddPTM_HeLa_A486_30min_R1 2 SPGFASPK 8 0 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(1)PGFASPK;S(1)PGFASPK ; 96.143 0.0029031 348820000 935170 922440 516010 248839 676870 812080 870230 830580 670540 941790 TRUE FALSE FALSE 869619.4122 849342.4949 715822.8912 579309.7676 591970.653 711893.8262 652489.2496 641475.0654 728662.9471 705959.654 1.231825937 1.20310345 1.013971389 0.820598974 0.838533264 1.008405823 0.924258555 0.908656836 1.032159477 1 19.42922621 -4.836297904 3.365192414 0.927532732 1.225698579 0.743372575 0.065777317 0.110966492 2.475660216 0.018217231 0.045998794 1.46E-05 4.836297904 0.298165847 S(ph)PGGPGSHVR ddPTM_HeLa_A485_30min_R1 1 SPGGPGSHVR 10 0 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 S(1)PGGPGSHVR 159.77 8.17E-07 0 130590 165420 146120 136450 225850 142430 168730 168040 160960 174450 TRUE FALSE FALSE 159639.295 184764.43 200175.8686 143903.918 203363.581 149887.4146 132679.4571 126827.9265 193263.1956 130962.8255 1.218966484 1.41081585 1.528493813 1.098815007 1.552834403 1.144503518 1.013107778 0.968426926 1.475710339 1 16.99879783 -6.436021307 8.852743613 1.107032246 1.358977642 0.306238938 0.182131384 0.454195775 43.10029669 0.062160173 0.054730437 3.66E-07 6.436021307 0.251945397 S(ph)PGGPGSHVR ddPTM_HeLa_A486_30min_R1 3 SPGGPGSHVR 10 0 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 S(1)PGGPGSHVR;S(1)PGGPGSHVR;S(1)PGGPGSHVR ;; 158.86 9.49E-07 0 323524 412066 356992 132161 469362 390909 362512 411120 364048 387947 TRUE FALSE FALSE 300846.6383 379412.3894 495228.863 307677.487 410490.2413 342682.6221 271807.6633 317516.9507 395603.9738 290802.5461 1.034539217 1.304707935 1.702972927 1.058028862 1.411577192 1.178403101 0.934681168 1.091864411 1.360386899 1 18.14968038 -6.514044593 23.78194996 1.09755329 1.309558449 0.187843147 0.202303449 380.9983483 1025674.466 0.075045737 0.061284954 3.06E-07 6.514044593 0.21200516 S(ph)PGHMVILDQTK ddPTM_HeLa_A485_30min_R1 10 SPGHMVILDQTK 12 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK ;;;;;;;;; 231.13 8.61E-24 14165300000 10752970 9863450 8021280 12924840 10985850 10408370 13326650 11044550 9429550 17334530 TRUE FALSE FALSE 13144931.08 11016894.68 10988685.27 13630891.28 9892060.2 10953336.16 10479302.36 8335856.795 11321974.19 13013350.69 1.010111185 0.846584015 0.844416287 1.047454388 0.760147055 0.841699914 0.805273185 0.640561912 0.870027594 1 23.63348914 -5.789485919 24.99994714 0.802033183 0.924049993 0.220495644 0.104020771 303.7534694 270756.3003 0.031340043 0.035543547 1.62E-06 5.789485919 0.12201681 S(ph)PGHMVILDQTK ddPTM_HeLa_A486_30min_R1 12 SPGHMVILDQTK 12 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK ;;;;;;;;;;; 224.67 2.84E-23 16414900000 9983010 9935140 5644960 3227438 8399080 9413720 10678620 9610060 8592130 11658440 TRUE FALSE FALSE 9283252.551 9147843.323 7830839.689 7513638.77 7345589.068 8252350.938 8006716.329 7422059.124 9336902.746 8739090.74 1.062267555 1.046772896 0.896070303 0.859773516 0.84054386 0.944303153 0.916195582 0.849294205 1.06840666 1 23.05905175 -4.754249878 20.18169178 0.911923963 1.054521452 0.376182832 0.06739402 13.85492651 38878.76302 0.016793593 0.041970774 1.76E-05 4.754249878 0.14259749 S(ph)PGILGYNICPR ddPTM_HeLa_A485_30min_R1 1 SPGILGYNICPR 12 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PGILGYNICPR 129.37 3.17E-05 134130000 20445 25278 28623 27729 33913 23978 28469 27283 25652 32723 TRUE FALSE FALSE 24992.91972 28234.04221 39211.8388 29243.76506 30536.50264 25233.451 22386.36558 20591.80147 30800.12111 24565.75832 1.017388488 1.149325083 1.596198997 1.190427939 1.243051496 1.027179812 0.911283311 0.838231867 1.253782631 1 14.58436115 -6.293424679 3.773862989 0.985184228 1.253750499 0.318346516 0.169615508 0.27360739 8.494807718 0.063192195 0.057426496 5.09E-07 6.293424679 0.268566271 S(ph)PGILGYNICPR ddPTM_HeLa_A486_30min_R1 1 SPGILGYNICPR 12 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PGILGYNICPR 88.021 0.002399 222160000 15567 31889 19415 7404.4 12924 13328 16346 16948 16638 18432 TRUE FALSE FALSE 14475.83369 29361.9995 26933.00795 17237.8174 11302.95141 11683.72687 12256.05791 13089.31037 18080.19524 13816.50723 1.047720198 2.125139083 1.949335495 1.247624824 0.818075887 0.845635346 0.88705906 0.947367533 1.308593767 1 13.75410533 -5.463935683 4.279005572 0.958156472 1.742412548 0.564325787 0.289577005 0.150721113 5.566999785 0.08386488 0.123688798 3.44E-06 5.463935683 0.784256075 S(ph)PGKAEAESDALPDDTVIESEALPSDIAAEAR ddPTM_HeLa_A485_30min_R1 2 SPGKAEAESDALPDDTVIESEALPSDIAAEAR 32 1 G3V529;Q9GZR7-2;Q9GZR7;A0A1W2PRR2;F5GYL3 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 0 S(1)PGKAEAESDALPDDTVIESEALPSDIAAEAR;S(0.649)PGKAEAES(0.351)DALPDDTVIESEALPSDIAAEAR ; 228.07 1.35E-39 1220660000 204929 244740 213904 317921 346850 287383 412740 443520 269310 524130 TRUE FALSE FALSE 250514.7491 273360.214 293035.9909 335288.2192 312316.3961 302429.9295 324554.7272 334746.0246 323358.0467 393474.0369 0.636674153 0.694735074 0.744740347 0.852122854 0.793740798 0.768614702 0.824844073 0.850744886 0.821802753 1 18.58590892 -2.179871246 0.077256617 1.178665178 8.27E-15 0.822933272 0.039519596 74.84883173 0.536903171 1.577373332 9.750996463 0.006608894 2.179871246 -1.178665178 S(ph)PGKAEAESDALPDDTVIESEALPSDIAAEAR ddPTM_HeLa_A486_30min_R1 3 SPGKAEAESDALPDDTVIESEALPSDIAAEAR 32 1 G3V529;Q9GZR7-2;Q9GZR7;A0A1W2PRR2;F5GYL3 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 0 S(0.972)PGKAEAES(0.028)DALPDDTVIESEALPSDIAAEAR;S(0.879)PGKAEAES(0.121)DALPDDTVIESEALPSDIAAEAR;S(0.999)PGKAEAES(0.001)DALPDDTVIESEALPSDIAAEAR ;; 217.77 3.70E-39 1047230000 285596 280701 190688 194832 352088 333688 494157 448061 257931 501003 TRUE FALSE FALSE 265577.1952 258457.2305 264527.5004 453578.7423 307925.8399 292520.9673 370513.6919 346047.2914 280288.6668 375548.5878 0.707171332 0.688212495 0.704376235 1.207776456 0.819936088 0.778916435 0.986593224 0.921444795 0.746344617 1 18.51864005 -5.059056738 24.99942586 0.915464632 0.697339846 0.403047879 0.124193449 249.0067819 105407.0914 0.03347409 0.057979011 8.73E-06 5.059056738 -0.218124786 S(ph)PGKCDQEKPAPSFACLK ddPTM_HeLa_A485_30min_R1 1 SPGKCDQEKPAPSFACLK 18 2 Q01850;H3BUE0;H3BTR1;H3BU23 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(1)PGKCDQEKPAPSFACLK 157.9 3.05E-09 650250000 762320 531350 259630 1040700 752290 831620 1423900 1438300 522500 1494100 TRUE FALSE FALSE 931895.454 593486.7604 355677.9411 1097550.806 677389.3661 875162.3373 1119672.133 1085554.67 627360.9573 1121648.367 0.830826738 0.529120157 0.317102892 0.97851594 0.603923107 0.780246611 0.998238098 0.967820845 0.559320528 1 20.09718904 -5.83775275 1.164581458 0.867009238 0.589038208 0.2111364 0.203448731 0.725950401 2.088281655 0.088426724 0.120121324 1.45E-06 5.83775275 -0.27797103 S(ph)PGKCDQEKPAPSFACLK ddPTM_HeLa_A486_30min_R1 2 SPGKCDQEKPAPSFACLK 18 2 Q01850;H3BUE0;H3BTR1;H3BU23 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(1)PGKCDQEKPAPSFACLK;S(1)PGKCDQEKPAPSFACLK ; 139.46 6.93E-07 1329660000 1274520 1063100 358440 788250 961950 1324720 1863110 1696970 671480 2017300 TRUE FALSE FALSE 1185182.73 978856.0843 497237.5674 1835085.836 841293.2612 1161289.515 1396940.172 1310606.976 729684.427 1512154.95 0.783770691 0.647325252 0.328827127 1.213556743 0.556353872 0.76796992 0.923807558 0.866714734 0.482546069 1 20.52817455 -5.236830971 24.99675447 0.814487296 0.592709536 0.198152477 0.222812262 1392.493538 1414466.844 0.05865198 0.101532082 5.80E-06 5.236830971 -0.22177776 S(ph)PGLCSDSLEK ddPTM_HeLa_A485_30min_R1 2 SPGLCSDSLEK 11 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 S(1)PGLCSDSLEK;S(1)PGLCSDSLEK ; 208.08 5.85E-15 796350000 317880 258330 201170 454060 382110 281210 382370 372210 296550 546100 TRUE FALSE FALSE 388591.3093 288539.4463 275591.1544 478864.1481 344065.7867 295933.7208 300673.5258 280924.9139 356064.8649 409967.3202 0.947859232 0.703810846 0.672227128 1.168054439 0.83925174 0.721847099 0.733408521 0.685237335 0.868520117 1 18.64514939 -6.014371933 24.73160476 0.778154649 0.8661999 0.034444535 0.152632798 1824.417995 3139509.241 0.050503331 0.052442344 9.67E-07 6.014371933 0.088045251 S(ph)PGLCSDSLEK ddPTM_HeLa_A486_30min_R1 4 SPGLCSDSLEK 11 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 S(1)PGLCSDSLEK;S(1)PGLCSDSLEK;S(1)PGLCSDSLEK;S(1)PGLCSDSLEK ;;; 189.24 9.42E-11 1218180000 1185070 1336030 750770 540089 1134130 1334840 1523730 1407760 1068670 1591000 TRUE FALSE FALSE 1102002.713 1230158.117 1041488.25 1257354.487 991876.8401 1170161.012 1142476.638 1087243.779 1161303.176 1192603.244 0.924031289 1.031489829 0.873289801 1.054294035 0.831690543 0.981182148 0.957968749 0.911655896 0.973754836 1 20.18568274 -7.999831609 24.98118848 1.000000006 0.947254145 0.069855789 0.063601342 12.22968008 1813860.375 0.056086546 0.014481484 1.00E-08 7.999831609 -0.052745862 S(ph)PGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR ddPTM_HeLa_A485_30min_R1 1 SPGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR 34 0 Q9Y2X9-2;Q9Y2X9 Q9Y2X9-2 ZNF281 Zinc finger protein 281 1 0 S(1)PGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR 196.01 1.58E-22 693000000 194850 292410 248150 148770 227340 230170 214960 231790 176270 202210 TRUE FALSE FALSE 238193.7103 326604.8059 339951.0114 156896.9284 204705.2314 242221.3453 169032.0399 174943.1391 211645.7722 151802.7684 1.56909991 2.151507573 2.239425637 1.033557754 1.348494718 1.595631936 1.113497743 1.152437079 1.394215497 1 17.21183858 -5.262121058 24.99933849 1.255148562 2.003160709 0.681170579 0.235592192 35.07754077 1286425.578 0.065673177 0.104357878 5.47E-06 5.262121058 0.748012147 S(ph)PGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR ddPTM_HeLa_A486_30min_R1 2 SPGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR 34 0 Q9Y2X9-2;Q9Y2X9 Q9Y2X9-2 ZNF281 Zinc finger protein 281 1 0 S(1)PGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR;S(1)PGLGGGEGGSHGVIQDLSILHQHVQQQPAQHHR ; 175.83 1.81E-15 1098490000 322080 252090 284770 39468 295490 231400 281280 279060 287810 261150 TRUE FALSE FALSE 299503.8552 232113.4703 395040.5704 91883.4986 258426.8889 202852.2207 210900.7689 215524.1298 312757.6025 195756.3402 1.529982911 1.18572645 2.018021843 0.469376872 1.32014569 1.036248535 1.077363669 1.100981606 1.597688239 1 17.57869951 -5.24923784 24.98707743 1.097506367 1.538691923 0.321178159 0.32594365 989.0222372 2025378.546 0.085183043 0.146143099 5.63E-06 5.24923784 0.441185557 S(ph)PGLLDTTPIR ddPTM_HeLa_A485_30min_R1 3 SPGLLDTTPIR 11 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 S(1)PGLLDTTPIR;S(1)PGLLDTTPIR;S(1)PGLLDTTPIR ;; 108.72 0.00061217 440540000 175908 237057 224679 191084 257691 224896 245566 242694 224713 269248 TRUE FALSE FALSE 215038.1277 264778.754 307797.1118 201522.4351 232034.3792 236671.2068 193098.818 183172.916 269810.8379 202129.4287 1.063863531 1.309946581 1.522772382 0.996997005 1.147949513 1.170889406 0.955322633 0.906215968 1.334841936 1 17.62491986 -5.288417804 24.90710367 1.07154278 1.299969494 0.306439786 0.155575209 829.9699374 766245.6405 0.0440138 0.065303496 5.15E-06 5.288417804 0.228426714 S(ph)PGLLDTTPIR ddPTM_HeLa_A486_30min_R1 4 SPGLLDTTPIR 11 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 S(1)PGLLDTTPIR;S(1)PGLLDTTPIR;S(1)PGLLDTTPIR;S(1)PGLLDTTPIR ;;; 167.84 4.53E-08 408047000 262452 274632 227174 90757 290816 232363 289173 262551 228446 279421 TRUE FALSE FALSE 244055.4701 252869.1601 315141.8567 211286.8826 254339.1455 203696.4156 216818.8568 202773.8687 248247.8832 209452.1629 1.165208641 1.207288369 1.504600632 1.008759612 1.214306608 0.972519991 1.035171248 0.968115421 1.18522473 1 17.67626126 -5.296176253 24.99972041 1.055933565 1.283858265 0.474516369 0.114420724 519.7821114 374079.9341 0.031850722 0.047244434 5.06E-06 5.296176253 0.227924701 S(ph)PGLLSSDNPQLSALLMGK ddPTM_HeLa_A485_30min_R1 1 SPGLLSSDNPQLSALLMGK 19 0 H0Y6I7;F5H5V6;F5H6S1;F8W8R6;A0A087X0R0;O15550 H0Y6I7 KDM6A Lysine-specific demethylase 6A 1 0 S(1)PGLLSSDNPQLSALLMGK 132.47 3.12E-06 42145000 39449 36141 31308 45251 36441 39699 43752 41033 30169 55562 TRUE FALSE FALSE 48224.29395 40367.37557 42890.13203 47722.94755 32812.80609 41777.57825 34404.02778 30969.59241 36223.64157 41711.41594 1.156141379 0.967777637 1.028258837 1.144121974 0.786662484 1.001586192 0.824810834 0.742472815 0.868434714 1 15.34815467 -5.762395751 24.99988008 0.862038543 1.063209717 0.535263529 0.092424693 20.54537646 537068.7216 0.027988148 0.033608337 1.73E-06 5.762395751 0.201171175 S(ph)PGLLSSDNPQLSALLMGK ddPTM_HeLa_A486_30min_R1 2 SPGLLSSDNPQLSALLMGK 19 0 H0Y6I7;F5H5V6;F5H6S1;F8W8R6;A0A087X0R0;O15550 H0Y6I7 KDM6A Lysine-specific demethylase 6A 1 0 S(0.908)PGLLS(0.083)S(0.01)DNPQLSALLMGK;S(1)PGLLSSDNPQLSALLMGK ; 140.02 5.14E-07 80108000 87580 102796 57007 32966 64638 83863 86526 86656 74724 101150 TRUE FALSE FALSE 81441.09426 94650.07058 79081.6371 76746.51401 56530.49931 73516.83572 64876.27962 66926.32049 81201.13648 75821.38162 1.074117782 1.248329542 1.042999157 1.012201471 0.74557464 0.969605593 0.855646234 0.882684001 1.070953005 1 16.21031713 -5.19620327 2.37721224 0.914644505 1.156502433 0.471187336 0.095783505 0.231217461 2.551467294 0.027201775 0.053964944 6.36E-06 5.19620327 0.241857928 S(ph)PGLPMSDLK ddPTM_HeLa_A485_30min_R1 1 SPGLPMSDLK 10 0 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)PGLPMSDLK 110.08 0.00046222 0 227830 208300 175230 234640 228030 226920 244970 163420 168500 337060 TRUE FALSE FALSE 278509.9975 232658.873 240054.8689 247457.7891 205326.5325 238801.1803 192630.1583 123340.9888 202316.4044 253037.1451 1.100668431 0.919465294 0.948694188 0.977950446 0.811448187 0.943739624 0.761272256 0.487442224 0.799552194 1 17.94898966 -6.34925415 1.193571752 0.726534904 0.977770949 0.29395521 0.136047497 0.511252168 1.494056629 0.0713902 0.059432862 4.47E-07 6.34925415 0.251236044 S(ph)PGLPMSDLK ddPTM_HeLa_A486_30min_R1 1 SPGLPMSDLK 10 0 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)PGLPMSDLK 134.3 5.41E-05 159330000 547460 537770 249590 179920 339260 422610 515130 412990 410240 616720 TRUE FALSE FALSE 509085.8811 495155.1467 346237.9323 418862.8527 296706.8473 370472.675 386239.0255 318961.1925 445799.9335 462289.2978 1.101227918 1.071093683 0.748963763 0.906062188 0.641820714 0.80138709 0.835492034 0.689960148 0.964331071 1 18.81843644 -4.751536919 24.17236749 0.808527617 1.086161128 0.48119064 0.108202949 98.81913271 241214.3979 0.025758781 0.066288209 1.77E-05 4.751536919 0.277633511 S(ph)PGLQK ddPTM_HeLa_A485_30min_R1 1 SPGLQK 6 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 S(1)PGLQK 71.501 0.027547 573890000 1459700 1509400 770310 1797300 1035500 1551700 1936400 2491800 1466400 2429300 TRUE FALSE FALSE 1784405.229 1685911.2 1055279.724 1895481.948 932401.9841 1632944.613 1522672.321 1880682.143 1760693.029 1823720.218 0.978442423 0.924435219 0.578641238 1.039349089 0.511263721 0.895392065 0.83492649 1.031233917 0.965440319 1 20.79845299 -7.192974607 4.733203134 0.998830888 0.814985943 0.207462203 0.156873932 0.332088715 14.45774669 0.075638536 0.041745775 6.41E-08 7.192974607 -0.183844945 S(ph)PGLVPPS(ph)PEFAPR ddPTM_HeLa_A485_30min_R1 2 SPGLVPPSPEFAPR 14 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 2 0 S(1)PGLVPPS(1)PEFAPR;S(1)PGLVPPS(1)PEFAPR ; 136.01 2.04E-05 525200000 271940 387980 335470 298460 347160 301750 322590 318510 314000 434090 TRUE FALSE FALSE 332432.1148 433350.886 459574.3131 314764.1141 312595.5314 317549.1634 253666.0112 240394.9231 377016.9198 325879.3518 1.020107942 1.329789333 1.410259074 0.965891556 0.959236999 0.974437815 0.778404676 0.737680745 1.15692178 1 18.31397842 -5.375966997 5.880679176 0.919917056 1.25945895 0.500597753 0.143515264 0.179851859 8.071291345 0.041286897 0.061668858 4.21E-06 5.375966997 0.339541895 S(ph)PGLYFLTAGDQGTLR ddPTM_HeLa_A486_30min_R1 2 SPGLYFLTAGDQGTLR 16 0 A0A087WYP7;J3KNP2;Q12788 A0A087WYP7 TBL3 Transducin beta-like protein 3 1 0 S(0.997)PGLY(0.003)FLTAGDQGTLR;S(1)PGLYFLTAGDQGTLR ; 172.57 2.64E-12 43954000 24239.4 26339 21677.3 9097.8 42123 25888 32294 33410 26320 27732 TRUE FALSE FALSE 22540.34323 24251.80172 30071.3311 21180.13818 36839.54056 22694.20177 24213.69963 25803.27234 28601.43879 20787.72669 1.084310159 1.166640397 1.446590651 1.018877075 1.772177454 1.091711571 1.164807484 1.241274369 1.375881029 1 14.34344438 -10.30524081 3.676725732 0.999268221 1.264379105 0.121995953 0.211188122 21258026.99 11917086.76 118672.5146 0.048990081 4.95E-11 10.30524081 0.265110884 S(ph)PGMEPPFSHR ddPTM_HeLa_A485_30min_R1 2 SPGMEPPFSHR 11 0 G3V470;Q99973-2;Q99973 G3V470 TEP1 Telomerase protein component 1 1 0 S(1)PGMEPPFSHR;S(1)PGMEPPFSHR ; 84.289 0.0021476 223840000 250930 329310 315870 238890 333860 266030 292210 262250 261680 331080 TRUE FALSE FALSE 306748.5128 367819.9399 432723.4574 251939.9558 300619.7261 279958.9194 229776.9464 197932.7763 314196.7757 248547.8491 1.234162814 1.479875771 1.741006647 1.013647701 1.209504437 1.126378363 0.92447771 0.796356826 1.264129933 1 17.92316409 -5.281162026 24.97397939 1.044175065 1.484501148 0.580891459 0.170171035 552.9176866 700135.7348 0.049384722 0.07336039 5.23E-06 5.281162026 0.440326083 S(ph)PGMEPPFSHR ddPTM_HeLa_A486_30min_R1 2 SPGMEPPFSHR 11 0 G3V470;Q99973-2;Q99973 G3V470 TEP1 Telomerase protein component 1 1 0 S(1)PGMEPPFSHR;S(1)PGMEPPFSHR ; 79.614 0.005419 548800000 369720 386040 302070 101827 377060 331000 333530 318210 323180 399940 TRUE FALSE FALSE 343804.5372 355448.7845 419039.5937 237058.4021 329765.6189 290164.5854 250077.2663 245760.5295 351193.5026 299792.4208 1.146808636 1.185649669 1.397765803 0.790741812 1.099979839 0.967884994 0.834168074 0.819768988 1.171455575 1 18.19360438 -5.261676086 24.99999787 0.948908323 1.237632198 0.511322918 0.129140707 17.03563522 1799329.296 0.035476303 0.056576681 5.47E-06 5.261676086 0.288723874 S(ph)PGMLEPLGSSR ddPTM_HeLa_A485_30min_R1 12 SPGMLEPLGSSR 12 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR ;;;;;;;;;;; 190.24 3.34E-13 22704930000 2661105 3305490 3551040 3023471 3726420 2951099 3427846 3167587 3001990 3691678 TRUE FALSE FALSE 3253058.627 3692038.302 4864717.467 3188635.565 3355404.541 3105613.98 2695458.699 2390731.322 3604461.857 2771410.615 1.173791646 1.3321874 1.755321799 1.15054606 1.210720823 1.120589625 0.972594492 0.862640602 1.300587447 1 21.40218905 -5.821807733 1.699752892 1.039415859 1.402491501 0.397597908 0.181953972 0.358430777 2.14109129 0.067436807 0.085725826 1.51E-06 5.821807733 0.363075642 S(ph)PGMLEPLGSSR ddPTM_HeLa_A486_30min_R1 11 SPGMLEPLGSSR 12 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR ;;;;;;;;;; 193.46 1.73E-13 26288560000 3314800 4125170 3418380 1217387 4112670 3430339 3833273 3639320 3299210 3695498 TRUE FALSE FALSE 3082449.638 3798276.506 4742068.283 2834138.459 3596820.579 3007138.651 2874147.551 2810726.282 3585188.179 2770121.247 1.112748996 1.371158937 1.711863078 1.023109895 1.298434349 1.085562105 1.037552979 1.014658216 1.294235111 1 21.40151769 -5.299601179 24.99807672 1.112369381 1.395847604 0.384076085 0.168752279 563.5953015 369184.7332 0.047683177 0.07072729 5.02E-06 5.299601179 0.283478224 S(ph)PGNKSDNIKPK ddPTM_HeLa_A485_30min_R1 3 SPGNKSDNIKPK 12 2 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637;H0YBZ9;A0A0G2JRX5;A0A0G2JRY6 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 S(1)PGNKSDNIKPK;S(0.996)PGNKS(0.004)DNIKPK;S(0.997)PGNKS(0.003)DNIKPK ;; 95.428 0.00070728 920450000 1322760 1030590 446312 1403960 883530 1349870 1856820 1804060 798340 1860760 TRUE FALSE FALSE 1617003.399 1151108.536 611421.3814 1480654.78 795562.6509 1420547.106 1460095.238 1361611.456 958559.5152 1396906.777 1.157559993 0.824041056 0.437696625 1.059952464 0.569517354 1.016923341 1.045234559 0.974733231 0.686201493 1 20.41380431 S(ph)PGNKSDNIKPK ddPTM_HeLa_A486_30min_R1 2 SPGNKSDNIKPK 12 2 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637;H0YBZ9;A0A0G2JRX5;A0A0G2JRY6 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 S(0.995)PGNKS(0.005)DNIKPK;S(1)PGNKSDNIKPK ; 87.647 0.0010892 1173640000 2494390 1860170 524841 1042600 1162090 2017590 2331500 1995150 1173160 3828020 TRUE FALSE FALSE 2319546.142 1712763.355 728073.4909 2427225.49 1016329.836 1768680.259 1748134.04 1540897.899 1274850.453 2869458.876 0.808356642 0.596894198 0.253731983 0.845882654 0.354188675 0.616381114 0.609220803 0.536999471 0.444282532 1 21.45234727 -10.70925895 4.263959845 1.0253853 0.559150386 0.363804315 0.173349687 0.039454636 0.00269024 0.158302093 0.038565695 1.95E-11 10.70925895 -0.466234914 S(ph)PGNLTEREELAGSLAR ddPTM_HeLa_A485_30min_R1 2 SPGNLTEREELAGSLAR 17 1 Q9H0F6-2;Q9H0F6 Q9H0F6-2 SHARPIN Sharpin 1 0 S(0.935)PGNLT(0.065)EREELAGSLAR;S(1)PGNLTEREELAGSLAR ; 137.52 2.25E-06 417160000 23479.3 48103 72127 13426.5 97998 31313 35740 40637 40222 30187 TRUE FALSE FALSE 28702.18928 53728.22741 98809.77875 14159.9557 88240.97503 32952.50026 28103.85703 30670.71203 48294.18646 22661.93645 1.266537365 2.370857739 4.36016485 0.624834322 3.893796773 1.454090224 1.240134844 1.353402085 2.131070598 1 14.46798352 -6.442376424 24.99991368 1.444318253 2.512618081 0.203081037 1.057195756 167.0917219 51888.74125 0.358514043 0.316179567 3.61E-07 6.442376424 1.068299828 S(ph)PGNLTEREELAGSLAR ddPTM_HeLa_A486_30min_R1 1 SPGNLTEREELAGSLAR 17 1 Q9H0F6-2;Q9H0F6 Q9H0F6-2 SHARPIN Sharpin 1 0 S(0.999)PGNLT(0.001)EREELAGSLAR 142.22 4.33E-08 274730000 72850 62226 101290 3304.6 103780 28140 35102 47658 70570 14706 TRUE FALSE FALSE 67743.5912 57294.98514 140512.2006 7693.275805 90762.94469 24668.37291 26319.10833 36807.31377 76687.06442 11023.52188 6.145367328 5.197520879 12.74657974 0.697896361 8.233570512 2.237794162 2.387540807 3.338979517 6.956675485 1 13.4282976 -5.280004958 24.9985042 3.73980254 7.746593602 0.327264497 2.925898438 1002.082413 1349299.121 0.801252623 1.190854627 5.25E-06 5.280004958 4.006791062 S(ph)PGNTSQPPAFFSK ddPTM_HeLa_A485_30min_R1 6 SPGNTSQPPAFFSK 14 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C184 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK ;;;;; 289.65 8.39E-58 10195800000 3871290 4301490 3487170 4065020 4891090 4203940 5164420 5123680 4134040 5226270 TRUE FALSE FALSE 4732445.105 4804511.838 4777219.296 4287081.749 4404115.906 4424051.798 4060999.478 3867089.446 4963703.908 3923457.071 1.206192656 1.224560827 1.217604579 1.092679663 1.122509008 1.127590214 1.035056432 0.985633174 1.265135267 1 21.90369398 -5.26497594 7.118011732 1.0896948 1.217277074 0.377172133 0.074385873 0.136469737 50.12027301 0.020204424 0.032229304 5.43E-06 5.26497594 0.127582273 S(ph)PGNTSQPPAFFSK ddPTM_HeLa_A486_30min_R1 5 SPGNTSQPPAFFSK 14 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C184 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK;S(0.999)PGNT(0.001)SQPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK ;;;; 268.47 2.41E-42 6350280000 2719990 2900750 1875160 958740 2662900 2491940 2850650 2766410 2175990 2950530 TRUE FALSE FALSE 2529332.747 2670884.006 2601272.171 2231995.172 2328894.251 2184509.779 2137387.219 2136558.833 2364606.565 2211698.083 1.143615743 1.20761691 1.176142526 1.009177152 1.052989225 0.987707045 0.966400991 0.966026443 1.069136237 1 21.07672303 -5.262214455 6.002927047 1.004900518 1.179895216 0.834123652 0.034404896 0.057029031 9.408241997 0.009871188 0.015961439 5.47E-06 5.262214455 0.174994698 S(ph)PGNVNNTIVVPLLEDGR ddPTM_HeLa_A485_30min_R1 1 SPGNVNNTIVVPLLEDGR 18 0 Q9Y4X4-2;Q9Y4X4-3;Q9Y4X4 Q9Y4X4-2 KLF12 Krueppel-like factor 12 1 0 S(1)PGNVNNTIVVPLLEDGR 110.74 0.00010441 30158000 10357 15697 17702 13095 19129 13182 14444 13316 11753 20548 TRUE FALSE FALSE 12660.87892 17532.6276 24250.70644 13810.34669 17224.44959 13872.18914 11357.9214 10050.23012 14111.7193 15425.76176 0.82076199 1.136580992 1.572091338 0.895278101 1.116602853 0.899287138 0.736295658 0.651522452 0.914815068 1 13.91305411 -6.291551187 1.950279336 0.795471479 1.138551247 0.28978218 0.207187492 0.398176643 2.978068768 0.086859166 0.077984116 5.11E-07 6.291551187 0.343079769 S(ph)PGNVNNTIVVPLLEDGRGHGK ddPTM_HeLa_A485_30min_R1 1 SPGNVNNTIVVPLLEDGRGHGK 22 1 Q9Y4X4-2;Q9Y4X4-3;Q9Y4X4 Q9Y4X4-2 KLF12 Krueppel-like factor 12 1 0 S(0.784)PGNVNNT(0.216)IVVPLLEDGRGHGK 55.127 0.017701 56792000 19566 32882 25370 17882 34196 37090 42836 66863 22928 25362 TRUE FALSE FALSE 23918.3892 36727.26386 34755.41873 18858.84838 30791.32617 39031.97505 33683.73866 50464.74441 27529.43929 19039.72015 1.256236384 1.928981286 1.825416469 0.990500292 1.61721527 2.050028821 1.769129924 2.650498222 1.445895164 1 14.21672465 -6.076049572 7.227139825 1.881767108 1.524005161 0.054715734 0.470206945 0.613846011 50.9082396 0.15103363 0.151648443 8.39E-07 6.076049572 -0.357761947 S(ph)PGPFFSTR ddPTM_HeLa_A486_30min_R1 2 SPGPFFSTR 9 0 A0A0C4DGC7;Q9NZ71-5;Q9NZ71-9;Q9NZ71-8;Q9NZ71-4;Q9NZ71;Q9NZ71-7;Q9NZ71-6;Q9NZ71-2;X6RBZ7 A0A0C4DGC7 RTEL1 Regulator of telomere elongation helicase 1 1 0 S(1)PGPFFSTR;S(1)PGPFFSTR ; 96.009 0.0025838 174171000 52264 54711 62188 23203.3 64799 41319 52897 56234 39906 55336 TRUE FALSE FALSE 48600.56349 50375.50111 86268.85905 54018.45503 56671.30519 36221.48188 39661.61111 43430.74578 43365.08421 41479.50542 1.171676542 1.214467255 2.079794785 1.30229265 1.366248334 0.873238037 0.956173674 1.047041071 1.045458083 1 15.34011107 -6.122031946 3.662168175 0.986230749 1.460899532 0.458481742 0.240300235 0.235005033 5.668261434 0.085852315 0.086715332 7.55E-07 6.122031946 0.474668783 S(ph)PGPGPGPGAGAEPGATGGSSHFISSR ddPTM_HeLa_A485_30min_R1 2 SPGPGPGPGAGAEPGATGGSSHFISSR 27 0 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 S(1)PGPGPGPGAGAEPGATGGSSHFISSR;S(1)PGPGPGPGAGAEPGATGGSSHFISSR ; 155.17 1.38E-09 615330000 34675.4 65904 89177 24124.2 88432 62980 61747 78411 65040 53171 TRUE FALSE FALSE 42388.8231 73610.89951 122167.2833 25442.04396 79627.39958 66277.53541 48554.24902 59180.57931 78092.93142 39916.44824 1.061938749 1.844124484 3.060574992 0.63738246 1.994851824 1.660406633 1.216397028 1.482611352 1.956409823 1 15.28469574 -5.280805577 24.99654546 1.466601948 1.974404278 0.156974013 0.596157271 1639.79865 2116534.571 0.166754288 0.247737792 5.24E-06 5.280805577 0.50780233 S(ph)PGPIVSR ddPTM_HeLa_A485_30min_R1 3 SPGPIVSR 8 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 S(1)PGPIVSR;S(1)PGPIVSR;S(1)PGPIVSR ;; 105.52 0.0014301 1689420000 138124 237641 296372 129815 252601 150290 142522 139543 165277 143416 TRUE FALSE FALSE 168849.2073 265431.0477 406012.3359 136906.4647 227451.1575 158158.952 112071.0104 105319.8605 198446.5779 107665.0306 1.568282723 2.465341312 3.771069712 1.271596395 2.112581553 1.468990917 1.040923035 0.978217903 1.843185079 1 16.71619022 -5.865168163 1.383937407 1.243917894 2.499968148 0.376611578 0.648120558 0.435790847 1.741774399 0.262288132 0.332907354 1.36E-06 5.865168163 1.256050254 S(ph)PGPIVSR ddPTM_HeLa_A486_30min_R1 4 SPGPIVSR 8 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 S(1)PGPIVSR;S(1)PGPIVSR;S(1)PGPIVSR;S(1)PGPIVSR ;;; 119.22 0.00081013 2462960000 204888 201475 194746 52773 225551 159394 161297 160451 148153 168700 TRUE FALSE FALSE 190526.4092 185509.3872 270156.8667 122858.211 197260.2904 139729.5889 120938.7846 123919.8099 160995.0213 126456.4219 1.506656651 1.466982731 2.136363362 0.971545842 1.559907258 1.104962379 0.956367282 0.979940821 1.273126496 1 16.94828078 -5.832274014 1.163974459 1.05241211 1.64025369 0.430651842 0.271493513 0.447492421 1.285955161 0.114911368 0.157024632 1.47E-06 5.832274014 0.58784158 S(ph)PGPLPGAR ddPTM_HeLa_A485_30min_R1 1 SPGPLPGAR 9 0 Q96A47 Q96A47 ISL2 Insulin gene enhancer protein ISL-2 1 0 S(1)PGPLPGAR 59.426 0.032923 198860000 55869 81998 80918 72278 91355 95477 87355 117630 76101 96187 TRUE FALSE FALSE 68296.8663 91586.95281 110852.9355 76226.36412 82259.37543 100476.0281 68690.89063 88781.05806 91373.77266 72209.35109 0.945817478 1.268353079 1.535160389 1.055630095 1.139178987 1.391454522 0.951274171 1.229495304 1.265400828 1 16.13989806 -6.755851171 24.99977654 1.130667195 1.227504788 0.081125339 0.178063517 443.0247304 1981954.038 0.070396334 0.05297102 1.75E-07 6.755851171 0.096837593 S(ph)PGPLPGAR ddPTM_HeLa_A486_30min_R1 2 SPGPLPGAR 9 0 Q96A47 Q96A47 ISL2 Insulin gene enhancer protein ISL-2 1 0 S(1)PGPLPGAR;S(1)PGPLPGAR ; 70.056 0.014902 403180000 163874 139107 120061 83193 175655 159297 170964 195808 121615 246850 TRUE FALSE FALSE 152387.2788 128083.6547 166551.8345 193677.5083 153622.712 139644.5558 128186.9989 151226.7929 132156.6861 185037.1533 0.823549629 0.692205065 0.900099421 1.046695244 0.830226305 0.754683874 0.69276357 0.817277991 0.71421703 1 17.49745545 -6.006040211 24.9381211 0.779543274 0.866054612 0.069176191 0.113252694 645.3170692 2664324.405 0.036844433 0.040448125 9.86E-07 6.006040211 0.086511337 S(ph)PGPPALK ddPTM_HeLa_A485_30min_R1 4 SPGPPALK 8 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK ;;; 78.934 0.0099869 2894070000 2382090 1699850 1573390 3207380 2673430 1831720 2445400 1977020 1809840 3747700 TRUE FALSE FALSE 2911977.702 1898632.671 2155452.435 3382591.048 2407253.922 1927626.027 1922920.313 1492152.745 2173058.287 2813467.361 1.035013856 0.674837283 0.766119581 1.202285512 0.855618215 0.685142488 0.68346992 0.53036078 0.772377287 1 21.4239178 -6.182886605 5.004437225 0.701899701 0.90561098 0.189434741 0.173879563 0.342663964 15.4069639 0.05896706 0.058709561 6.56E-07 6.182886605 0.203711278 S(ph)PGPPALK ddPTM_HeLa_A486_30min_R1 4 SPGPPALK 8 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK;S(1)PGPPALK ;;; 92.838 0.0034717 3281430000 2808880 3007660 1677930 1153340 2713700 3289590 3464760 3158270 2417330 3576950 TRUE FALSE FALSE 2611992.017 2769322.068 2327669.433 2685033.807 2373322.442 2883753.832 2597840.402 2439200.866 2626866.111 2681258.438 0.974166451 1.032844141 0.868125728 1.001408058 0.885152437 1.07552252 0.968888476 0.909722402 0.979713881 1 21.35447885 S(ph)PGPPALKHPATK ddPTM_HeLa_A485_30min_R1 4 SPGPPALKHPATK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 S(1)PGPPALKHPATK;S(1)PGPPALKHPATK;S(1)PGPPALKHPATK;S(1)PGPPALKHPATK ;;; 176.44 6.49E-13 7804400000 5703630 6608290 3720280 5294480 7107100 8126300 9863600 12601100 5183230 6959000 TRUE FALSE FALSE 6972382.816 7381072.031 5096566.386 5583704.036 6399492.169 8551780.502 7756161.282 9510660.467 6223456.718 5224249.371 1.334619066 1.412848336 0.975559554 1.068805036 1.224959169 1.636939567 1.484646067 1.820483632 1.191263333 1 22.31679233 -6.149487922 6.864988433 1.480855439 1.191886824 0.158108784 0.242130137 0.367673649 19.9913152 0.078693993 0.078795707 7.09E-07 6.149487922 -0.288968615 S(ph)PGPPALKHPATK ddPTM_HeLa_A486_30min_R1 4 SPGPPALKHPATK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 S(1)PGPPALKHPATK;S(1)PGPPALKHPATK;S(1)PGPPALKHPATK;S(1)PGPPALKHPATK ;;; 171.29 2.32E-12 5547380000 8221540 6940180 3639810 2807600 7452840 6618880 7960230 7793980 4739560 9338150 TRUE FALSE FALSE 7645252.502 6390214.861 5049241.909 6536234.688 6518035.312 5802309.881 5968496.259 6019460.895 5150388.877 6999816.459 1.092207567 0.912911774 0.721339186 0.933772296 0.931172317 0.828923146 0.85266468 0.859945533 0.735789132 1 22.73888566 -4.317739113 3.808890599 0.855197003 1.104028038 0.423282357 0.081538171 0.200852291 5.243083281 0.0198661 0.123542894 4.81E-05 4.317739113 0.248831035 S(ph)PGPPPPVGVK ddPTM_HeLa_A485_30min_R1 1 SPGPPPPVGVK 11 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 S(1)PGPPPPVGVK 96.229 0.0019243 387700000 490930 482630 415400 531440 571080 491030 601100 573420 499940 730750 TRUE FALSE FALSE 600135.6848 539069.3802 569073.7462 560471.2215 514221.27 516739.5715 472670.0745 432787.8459 600273.3723 548587.4735 1.093965345 0.982649817 1.037343676 1.021662449 0.937355107 0.941945627 0.861612956 0.788913103 1.094216331 1 19.06536215 -5.787088099 2.83763575 0.920406032 1.03322061 0.247332304 0.080031693 0.34226298 5.648116984 0.025608373 0.031581022 1.63E-06 5.787088099 0.112814578 S(ph)PGPVRKPK ddPTM_HeLa_A485_30min_R1 1 SPGPVRKPK 9 2 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 S(1)PGPVRKPK 51.841 0.034219 604610000 626170 1281600 556020 405150 1052900 1546000 1893300 2835000 855890 684200 TRUE FALSE FALSE 765459.3562 1431471.972 761714.9359 427282.3186 948069.579 1626946.169 1488780.988 2139711.805 1027659.272 513641.5318 1.490259858 2.78690854 1.48296991 0.83186871 1.845780608 3.167473946 2.898482494 4.165768678 2.000732434 1 18.97040233 -6.186891034 5.945782113 2.858228615 1.678586588 0.206379974 0.896029652 0.303850566 18.91634447 0.292684986 0.292063801 6.50E-07 6.186891034 -1.179642027 S(ph)PGQMTVPLCIGVSTDK ddPTM_HeLa_A486_30min_R1 1 SPGQMTVPLCIGVSTDK 17 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 S(0.996)PGQMT(0.004)VPLCIGVSTDK 61.127 0.0090421 0 24354 29018 17513 15741 33151 25879 30755 32069 21171 30078 TRUE FALSE FALSE 22646.91036 26718.508 24294.50261 36645.84351 28992.89246 22686.3121 23059.77371 24767.58876 23006.11933 22546.27303 1.004463591 1.185052091 1.077539626 1.625361472 1.285928385 1.006211185 1.022775413 1.098522524 1.020395668 1 14.46060135 -6.263291147 24.76872577 1.035313264 1.245721596 0.303284776 0.155686711 202.8022071 2712606.232 0.057003401 0.052847742 5.45E-07 6.263291147 0.210408333 S(ph)PGREEVAR ddPTM_HeLa_A486_30min_R1 1 SPGREEVAR 9 1 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 0 S(1)PGREEVAR 60.628 0.0059994 0 58923 89375 79737 28724 113510 93144 102550 105970 70957 88285 TRUE FALSE FALSE 54792.80198 82292.5995 110613.3018 66870.92363 99272.51736 81652.8403 76890.90534 81842.94431 77107.60989 66177.86136 0.827962718 1.243506481 1.671454767 1.010472721 1.500086514 1.233839212 1.161882596 1.236711834 1.165157174 1 16.01406105 -8.270929832 0.857629292 0.999898542 1.258876174 0.092442422 0.220030136 2.389451797 3.461626494 0.212544912 0.073232399 5.36E-09 8.270929832 0.258977631 S(ph)PGS(ph)PVCR ddPTM_HeLa_A485_30min_R1 1 SPGSPVCR 8 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 S(1)PGS(1)PVCR 81.335 0.01698 772260000 324740 478740 434460 396290 582770 403680 479950 528590 399460 479770 TRUE FALSE FALSE 396977.2927 534724.4785 595184.8334 417938.3192 524747.3726 424816.0606 377404.7617 398952.4737 479627.9579 360172.1685 1.102187585 1.484635753 1.652500902 1.160384826 1.456934817 1.179480531 1.047845432 1.107671576 1.331663021 1 18.45832718 -6.380525898 5.051042836 1.128907753 1.380847904 0.336542576 0.167914252 0.273991872 10.23629528 0.060408666 0.05287902 4.16E-07 6.380525898 0.251940151 S(ph)PGS(ph)PVCR ddPTM_HeLa_A486_30min_R1 2 SPGSPVCR 8 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 S(1)PGS(1)PVCR;S(1)PGS(1)PVCR ; 95.483 0.0062819 1469250000 1280440 1447820 1195390 587180 1631050 1470530 1607810 1632860 1179830 1704670 TRUE FALSE FALSE 1190687.768 1333089.47 1658277.022 1366984.714 1426468.5 1289110.96 1205518.932 1261093.423 1282098.614 1277809.536 0.931819441 1.043261482 1.297749762 1.069787535 1.116338906 1.008844372 0.943426151 0.986918149 1.003356586 1 20.28524138 -6.367212109 4.324893992 0.981733931 1.099211909 0.264864914 0.08613391 0.323553562 10.22088832 0.032975425 0.028860104 4.29E-07 6.367212109 0.117477978 S(ph)PGSGSQSSGWHEVEPGMPS(ph)PTTLK ddPTM_HeLa_A486_30min_R1 2 SPGSGSQSSGWHEVEPGMPSPTTLK 25 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 2 0 S(0.617)PGS(0.077)GS(0.089)QS(0.104)S(0.112)GWHEVEPGMPS(0.618)PT(0.309)T(0.073)LK;S(0.999)PGS(0.001)GSQSSGWHEVEPGMPS(0.816)PT(0.151)T(0.033)LK ; 98.683 0.0015648 352900000 413230 374250 269260 17981 402950 303120 367270 326170 326500 198789 TRUE FALSE FALSE 384264.7109 344593.067 373524.683 41860.67671 352408.2536 265724.1363 275375.1614 251908.2112 354801.2829 149010.9405 2.578768442 2.312535347 2.50669301 0.280923512 2.364982413 1.783252528 1.848019753 1.690535006 2.381041833 1 17.18505873 S(ph)PGSGSQSSGWHEVEPGMPS(ph)PTTLKK ddPTM_HeLa_A485_30min_R1 1 SPGSGSQSSGWHEVEPGMPSPTTLKK 26 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 2 0 S(0.881)PGS(0.097)GS(0.012)QS(0.005)S(0.005)GWHEVEPGMPS(0.759)PT(0.184)T(0.057)LKK 81.721 0.0029428 168080000 108820 132630 89589 77245 167310 135420 188840 202140 99078 156990 TRUE FALSE FALSE 133026.6336 148139.9248 122731.6992 81464.69876 150652.0289 142510.3818 148492.7913 152564.8481 118962.0458 117855.2822 1.12872865 1.256964661 1.041376313 0.691226539 1.27827982 1.209198087 1.259958727 1.294510057 1.00939087 1 16.8466569 S(ph)PGSGSQSSGWHEVEPGMPSPTTLK ddPTM_HeLa_A485_30min_R1 4 SPGSGSQSSGWHEVEPGMPSPTTLK 25 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.999)PGS(0.001)GSQSSGWHEVEPGMPSPTTLK;S(0.971)PGS(0.021)GS(0.006)QS(0.001)S(0.001)GWHEVEPGMPSPTTLK;S(0.946)PGS(0.036)GS(0.006)QS(0.006)S(0.006)GWHEVEPGMPSPTTLK;S(0.395)PGS(0.341)GS(0.072)QS(0.096)S(0.096)GWHEVEPGMPSPTTLK ;;; 218.19 3.85E-38 1898170000 805517 1356817 1250572 495774 1750560 1227753 1454200 1695130 1429024 1288302 TRUE FALSE FALSE 984701.4776 1515484.945 1713210.623 522856.8783 1576268.1 1292036.249 1143498.29 1279396.71 1715816.009 967152.0208 1.0181455 1.566956293 1.77139745 0.540614988 1.629803863 1.335918471 1.182335626 1.322849647 1.774091324 1 19.88338315 S(ph)PGSGSQSSGWHEVEPGMPSPTTLK ddPTM_HeLa_A486_30min_R1 3 SPGSGSQSSGWHEVEPGMPSPTTLK 25 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.967)PGS(0.032)GSQSSGWHEVEPGMPSPTTLK;S(0.922)PGS(0.029)GS(0.034)QS(0.007)S(0.007)GWHEVEPGMPSPTTLK;S(0.932)PGS(0.04)GS(0.007)QS(0.01)S(0.01)GWHEVEPGMPSPTTLK ;; 222.47 2.80E-38 1786320000 1203880 1155400 957910 82578.1 1415750 917910 1230280 1125930 1218540 641849 TRUE FALSE FALSE 1119494.229 1063841.896 1328838.406 192245.9901 1238173.434 804667.5968 922450.9314 869580.3179 1324164.028 481125.8327 2.326822118 2.211151063 2.761935268 0.399575282 2.573491901 1.672468078 1.917275833 1.807386465 2.75221977 1 18.87605474 S(ph)PGSGSQSSGWHEVEPGMPSPTTLKK ddPTM_HeLa_A485_30min_R1 2 SPGSGSQSSGWHEVEPGMPSPTTLKK 26 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.997)PGS(0.003)GSQSSGWHEVEPGMPSPTTLKK;S(0.971)PGS(0.028)GSQSSGWHEVEPGMPSPTTLKK ; 196.93 3.08E-24 2281800000 931810 1358990 1034270 515650 1543240 1282770 1740310 1996490 1183060 1143730 TRUE FALSE FALSE 1139087.92 1517912.059 1416889.513 543818.6538 1389589.607 1349933.854 1368478.551 1506847.697 1420489.29 858619.1598 1.326650945 1.767852536 1.650195545 0.633364219 1.618400418 1.57221492 1.593813201 1.754966308 1.654388065 1 19.71165884 S(ph)PGSGSQSSGWHEVEPGMPSPTTLKK ddPTM_HeLa_A486_30min_R1 4 SPGSGSQSSGWHEVEPGMPSPTTLKK 26 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.999)PGS(0.001)GSQSSGWHEVEPGMPSPTTLKK;S(0.891)PGS(0.027)GS(0.027)QS(0.027)S(0.027)GWHEVEPGMPSPTTLKK;S(0.998)PGS(0.002)GSQSSGWHEVEPGMPSPTTLKK;S(0.998)PGS(0.002)GSQSSGWHEVEPGMPSPTTLKK ;;; 238.98 1.80E-49 2470630000 3223820 2958190 1922930 139315 3134660 2303730 2758970 2698920 2565460 1462710 TRUE FALSE FALSE 2997846.866 2723772.251 2667539.994 324332.3606 2741481.713 2019519.215 2068646.525 2084434.833 2787836.138 1096437.895 2.73416933 2.484201123 2.43291481 0.295805501 2.500352938 1.841891113 1.886697398 1.901097036 2.54263023 1 20.06439267 -5.027464122 24.97918723 1.760160833 2.571529198 0.27266646 0.62920236 938.4358867 853527.0898 0.166650118 0.289626014 9.39E-06 5.027464122 0.811368365 S(ph)PGSISYLPSFFTK ddPTM_HeLa_A485_30min_R1 1 SPGSISYLPSFFTK 14 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.999)PGS(0.001)ISYLPSFFTK 256.57 1.39E-41 1450500000 372730 487010 383770 404770 520160 492170 571740 664710 409350 551170 TRUE FALSE FALSE 455642.5026 543961.5831 525742.493 426881.5602 468371.044 517939.2602 449583.0783 501688.8303 491502.7902 413773.4625 1.101188316 1.314636226 1.270604668 1.031679406 1.131950418 1.25174596 1.086544013 1.212472224 1.187854792 1 18.65848159 -11.45447246 1.64715859 5.95E-05 1.178402006 0.280710668 0.084720566 2162438.136 174992.7022 8018034.77 0.022311136 3.51E-12 11.45447246 1.17834255 S(ph)PGSISYLPSFFTK ddPTM_HeLa_A486_30min_R1 2 SPGSISYLPSFFTK 14 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.989)PGS(0.011)ISYLPSFFTK;S(0.999)PGS(0.001)ISYLPSFFTK ; 256.57 1.39E-41 3332100000 1400220 1361940 1059430 468470 1508380 1195070 1527430 1491100 1157720 1457990 TRUE FALSE FALSE 1302071.809 1254014.914 1469669.669 1090621.835 1319184.915 1047634.414 1145250.858 1151609.08 1258072.102 1092899.814 1.191391738 1.147419826 1.344743269 0.997915656 1.207050178 0.958582297 1.047901046 1.0537188 1.15113214 1 20.05972972 -5.275379831 24.99897467 1.063173028 1.219808441 0.459814794 0.083429601 709.4155985 1272171.64 0.022769259 0.033951615 5.30E-06 5.275379831 0.156635414 S(ph)PGSNSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_HeLa_A485_30min_R1 3 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 S(0.954)PGS(0.037)NS(0.009)KVPEIEVTVEGPNNNNPQTSAVR;S(0.737)PGS(0.132)NS(0.132)KVPEIEVTVEGPNNNNPQTSAVR;S(0.788)PGS(0.106)NS(0.106)KVPEIEVTVEGPNNNNPQTSAVR ;; 214.12 6.45E-30 966780000 92252 135522 103480 81583 146273 176378 231333 302405 105615 121486 TRUE FALSE FALSE 112773.1391 151370.119 141761.5582 86039.67271 131709.5465 185612.8793 181906.8147 228239.6996 126810.9617 91201.77598 1.236523499 1.659727756 1.554372781 0.943399093 1.444155501 2.035189308 1.994553426 2.502579551 1.390443995 1 16.4767743 -6.181308725 5.916194945 1.890576298 1.365293205 0.177391684 0.42065456 0.318955569 18.56414347 0.135999151 0.135822077 6.59E-07 6.181308725 -0.525283093 S(ph)PGSNSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_HeLa_A486_30min_R1 5 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 S(0.886)PGS(0.047)NS(0.068)KVPEIEVTVEGPNNNNPQTSAVR;S(0.977)PGS(0.02)NS(0.004)KVPEIEVTVEGPNNNNPQTSAVR;S(0.806)PGS(0.097)NS(0.097)KVPEIEVTVEGPNNNNPQTSAVR;S(0.332)PGS(0.332)NS(0.332)KVPEIEVT(0.004)VEGPNNNNPQTSAVR;S(0.333)PGS(0.333)NS(0.333)KVPEIEVT(0.001)VEGPNNNNPQTSAVR ;;;; 221.13 8.88E-39 3430063000 304695 243978 199876 114792.3 341748 270066 352295 387489 221230 421006 TRUE FALSE FALSE 283337.4539 224644.2947 277273.3401 267242.2757 298882.7792 236748.0027 264147.0648 299266.2135 240406.3945 315583.3573 0.89782128 0.711838218 0.878605711 0.846819927 0.947080295 0.75019166 0.837012025 0.948295297 0.761784134 1 18.2676616 -10.61312418 2.691640061 1.014276372 0.842887904 0.276509355 0.076586314 41963717.72 39439346.71 4216814.319 0.018208095 2.44E-11 10.61312418 -0.171388468 S(ph)PGSSWQEYGPSDTCGSR ddPTM_HeLa_A485_30min_R1 2 SPGSSWQEYGPSDTCGSR 18 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.927)PGS(0.069)S(0.004)WQEYGPSDTCGSR;S(0.783)PGS(0.217)SWQEYGPSDTCGSR ; 337.95 8.27E-102 318790000 46205 61400 58867 44496 70053 49389 63448 60600 56040 62509 TRUE FALSE FALSE 56483.14284 68580.19589 80644.35296 46926.70381 63078.27735 51974.93167 49891.81648 45737.75498 67286.71397 46926.65669 1.203647283 1.461433665 1.718519039 1.000001004 1.344188608 1.107577981 1.063187109 0.974664683 1.43386976 1 15.51812006 -5.275069223 24.99531663 1.135836908 1.461223381 0.405435684 0.18268463 748.8955472 1373372.753 0.050709067 0.075666607 5.31E-06 5.275069223 0.325386473 S(ph)PGSSWQEYGPSDTCGSR ddPTM_HeLa_A486_30min_R1 3 SPGSSWQEYGPSDTCGSR 18 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.446)PGS(0.446)S(0.107)WQEYGPSDTCGSR;S(0.998)PGS(0.002)SWQEYGPSDTCGSR;S(0.848)PGS(0.151)S(0.001)WQEYGPSDTCGSR ;; 300.54 7.30E-79 442305000 99458 135126 124403 45549 143648 113675 141833 135453 108686 121973 TRUE FALSE FALSE 92486.5078 124418.1236 172575.1732 106040.3739 125630.3284 99650.93426 106344.8832 104613.3088 118106.99 91430.16689 1.011553527 1.360799481 1.88750802 1.159796351 1.374057739 1.089913074 1.163126864 1.144188099 1.291772661 1 16.48038263 -5.983736117 1.917043287 1.150459542 1.401298688 0.180226837 0.223191759 0.586270351 4.35610179 0.084571674 0.094038411 1.04E-06 5.983736117 0.250839145 S(ph)PGSTPTTPTSSQAPQK ddPTM_HeLa_A485_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 S(0.755)PGS(0.245)TPTTPTSSQAPQK 268.92 2.74E-52 555580000 107840 77024 69515 134110 115810 87961 117790 95410 104270 174810 TRUE FALSE FALSE 131828.636 86031.28678 95231.49126 141436.0897 104279.5498 92566.50195 92623.20424 72010.5479 125196.0326 131233.0841 1.004538123 0.655560961 0.725666793 1.077747206 0.794613267 0.705359495 0.705791568 0.548722514 0.953997488 1 17.00177195 -5.995481255 24.99201007 0.749783315 0.852757943 0.034074133 0.166535946 365.8724266 2023519.729 0.051310919 0.057959597 1.01E-06 5.995481255 0.102974628 S(ph)PGSTPTTPTSSQAPQK ddPTM_HeLa_A486_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 S(0.629)PGS(0.356)T(0.015)PTTPTSSQAPQK 109.07 0.00017294 168490000 31807 42460 27837 12845 42775 42917 51804 41117 36620 44077 TRUE FALSE FALSE 29577.49355 39095.31496 38616.2319 29903.80915 37409.76064 37622.33689 38842.09127 31755.55668 39794.25109 33039.83231 0.895207133 1.18327825 1.168778084 0.905083563 1.132262425 1.138696363 1.175614056 0.961129475 1.204432599 1 15.01191874 S(ph)PGTPRPPGASK ddPTM_HeLa_A485_30min_R1 3 SPGTPRPPGASK 12 1 A0A2R8Y4Z8;M0QYB4;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 S(0.918)PGT(0.082)PRPPGASK;S(0.923)PGT(0.077)PRPPGASK;S(0.99)PGT(0.01)PRPPGASK ;; 56.648 0.0071874 351970000 884760 888590 686310 1310250 964800 1088570 1226290 1413580 850470 1586080 TRUE FALSE FALSE 1081571.81 992502.8708 940204.6287 1381825.64 868741.1244 1145565.842 964283.1236 1066897.289 1021151.528 1190699.446 0.908349973 0.833546093 0.789623807 1.160515901 0.729605718 0.962094881 0.80984595 0.896025687 0.857606453 1 20.18337787 -10.61513107 2.462284299 1.013181583 0.88302651 0.089832472 0.111702425 14928860.71 12447317.78 1262260.962 0.027291007 2.43E-11 10.61513107 -0.130155073 S(ph)PGTPRPPGASK ddPTM_HeLa_A486_30min_R1 3 SPGTPRPPGASK 12 1 A0A2R8Y4Z8;M0QYB4;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 S(0.971)PGT(0.029)PRPPGASK;S(0.889)PGT(0.111)PRPPGASK;S(0.985)PGT(0.015)PRPPGASK ;; 64.675 0.0096453 2783570000 863070 809160 534350 311005 869470 869940 908730 932370 700800 1063410 TRUE FALSE FALSE 802573.2499 745039.2147 741264.6304 724035.3573 760412.9651 762615.6477 681356.1424 720089.7045 761545.9083 797125.2144 1.006834604 0.934657694 0.929922448 0.908308186 0.953944188 0.956707471 0.854766767 0.903358333 0.955365474 1 19.60444684 -4.254334601 3.654441743 0.927463473 1.016231651 0.252784402 0.037196863 0.375735733 9.189473499 0.009352103 0.091837845 5.57E-05 4.254334601 0.088768179 S(ph)PGVAAAVAEDGGLKK ddPTM_HeLa_A485_30min_R1 4 SPGVAAAVAEDGGLKK 16 1 E9PLH8;E9PM78;H0YD80;E9PLS2;E9PQV9;E9PM04;Q9BTE7 E9PLH8 DCUN1D5 DCN1-like protein;DCN1-like protein 5 1 0 S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK ;;; 111.31 0.0001068 1295670000 949960 840330 658464 1414380 1209410 989220 1449490 1358270 896380 1879020 TRUE FALSE FALSE 1161275.325 938599.2836 902057.2346 1491643.998 1088996.894 1041014.03 1139794.62 1025152.153 1076275.244 1410614.895 0.823240509 0.66538308 0.63947803 1.057442399 0.772001556 0.73798599 0.808012608 0.726741336 0.762983042 1 20.42789275 -10.57346764 2.727641478 1.015354652 0.776083841 0.275923512 0.108349466 33972743.05 33041250.51 3777772.686 0.029195282 2.67E-11 10.57346764 -0.239270811 S(ph)PGVAAAVAEDGGLKK ddPTM_HeLa_A486_30min_R1 4 SPGVAAAVAEDGGLKK 16 1 E9PLH8;E9PM78;H0YD80;E9PLS2;E9PQV9;E9PM04;Q9BTE7 E9PLH8 DCUN1D5 DCN1-like protein;DCN1-like protein 5 1 0 S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK ;;; 143.04 5.24E-08 1460990000 1960390 1947750 837970 987480 1710520 2291380 2720390 2602990 1476820 2830890 TRUE FALSE FALSE 1822976.784 1793403.196 1162454.426 2298903.344 1495970.632 2008692.833 2039719.649 2010346 1604831.947 2122016.718 0.859077485 0.845140937 0.547806441 1.083357791 0.704975893 0.946596139 0.961217521 0.947375194 0.756276769 1 21.01700459 -5.270054566 24.99896532 0.906648434 0.760121547 0.244504722 0.130978911 953.1555127 2765801.645 0.03572428 0.053913879 5.37E-06 5.270054566 -0.146526887 S(ph)PGVVISDDEPGYDLDLFCIPNHYAEDLER ddPTM_HeLa_A485_30min_R1 1 SPGVVISDDEPGYDLDLFCIPNHYAEDLER 30 0 P00492 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase 1 0 S(1)PGVVISDDEPGYDLDLFCIPNHYAEDLER 201.71 5.82E-29 146470000 28506 33629 42557 35740 52034 34005 47401 50195 42217 46600 TRUE FALSE FALSE 34847.06136 37561.61902 58300.60524 37692.3857 46853.31226 35785.44922 37273.38912 37884.59755 50689.56466 34983.47761 0.996100552 1.073695973 1.666518289 1.077433928 1.339298305 1.022924296 1.065456943 1.082928289 1.448957283 1 15.09438609 -6.26114449 24.99945642 1.125574109 1.237599403 0.059901455 0.210111484 90.67997602 7687601.514 0.07230478 0.068059471 5.48E-07 6.26114449 0.112025294 S(ph)PGVVISDDEPGYDLDLFCIPNHYAEDLER ddPTM_HeLa_A486_30min_R1 3 SPGVVISDDEPGYDLDLFCIPNHYAEDLER 30 0 P00492 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase 1 0 S(1)PGVVISDDEPGYDLDLFCIPNHYAEDLER;S(0.999)PGVVIS(0.001)DDEPGYDLDLFCIPNHYAEDLER;S(0.854)PGVVIS(0.146)DDEPGYDLDLFCIPNHYAEDLER ;; 197.59 7.57E-29 322076000 20982 34174.9 32512.5 8187 40762.9 33378.6 34953.6 36885.6 24637.9 28691.6 TRUE FALSE FALSE 19511.27015 31466.75646 45102.21071 19059.74975 35650.03698 29260.6877 26207.83958 28487.55409 26773.53301 21507.03661 0.907204024 1.463091221 2.097090898 0.886209946 1.657598749 1.360516943 1.218570464 1.324569005 1.244873178 1 14.39252113 -8.092546036 0.576816168 0.997566848 1.420646002 0.10604194 0.329803125 2.245302531 1.73419732 0.358494993 0.153972076 8.08E-09 8.092546036 0.423079153 S(ph)PGYEPR ddPTM_HeLa_A485_30min_R1 3 SPGYEPR 7 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 S(1)PGYEPR;S(1)PGYEPR;S(1)PGYEPR ;; 117.81 0.0022799 3064830000 1456760 2164180 1916060 1443600 2352000 1842610 2201300 2431010 1865120 2268690 TRUE FALSE FALSE 1780811.236 2417262.025 2624890.328 1522460.213 2117826.622 1939086.21 1730974.272 1834800.986 2239432.476 1703147.335 1.045600225 1.4192912 1.541199797 0.89390987 1.243478223 1.138531101 1.016338538 1.077300212 1.314878889 1 20.69977181 -5.259393636 24.9998986 1.105373277 1.343756475 0.310236729 0.161921946 224.2765651 2740744.033 0.044057854 0.071764211 5.50E-06 5.259393636 0.238383198 S(ph)PGYEPR ddPTM_HeLa_A486_30min_R1 3 SPGYEPR 7 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 S(1)PGYEPR;S(1)PGYEPR;S(1)PGYEPR ;; 113.71 0.0026696 2728900000 1360106 1439656 1129488 437195 1525370 1243809 1369160 1295680 1267046 1491762 TRUE FALSE FALSE 1264769.593 1325572.415 1566856.002 1017812.055 1334043.871 1090360.492 1026581.687 1000681.948 1376874.567 1118215.085 1.131061108 1.185435998 1.401211648 0.910211343 1.193011871 0.975090129 0.91805387 0.894892192 1.231314606 1 20.09276628 -5.271714469 24.99932197 1.014532088 1.233856232 0.397834891 0.124916108 692.3703361 1684538.294 0.035029041 0.052608068 5.35E-06 5.271714469 0.219324144 S(ph)PHEAGFCVYLK ddPTM_HeLa_A485_30min_R1 4 SPHEAGFCVYLK 12 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK ;;; 179.56 6.33E-13 3771630000 3260330 3579870 2593800 3136500 2940510 3174550 3543080 3342400 2607800 3688790 TRUE FALSE FALSE 3985579.16 3998504.656 3553354.557 3307839.053 2647742.5 3340764.529 2786072.014 2522671.159 3131161.54 2769242.54 1.439230801 1.443898322 1.283150358 1.194492358 0.956125172 1.206382063 1.006077284 0.910960713 1.130692417 1 21.40105998 -5.192727793 1.294446939 1.032348566 1.465480107 0.787739527 0.083785694 0.213519184 0.674746806 0.028166556 0.077722939 6.42E-06 5.192727793 0.43313154 S(ph)PHEAGFCVYLK ddPTM_HeLa_A486_30min_R1 6 SPHEAGFCVYLK 12 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK ;;;;; 171.26 9.39E-11 4711661000 3807478 4150090 2253516 1169864 2836949 3239736 3390442 3137690 3089293 4229700 TRUE FALSE FALSE 3540593.454 3821221.754 3126137.746 2723502.514 2481112.403 2840050.312 2542117.551 2423306.482 3357075.405 3170555.589 1.116710732 1.205221497 0.985990518 0.858998506 0.782548147 0.89575793 0.801789301 0.764316037 1.058828748 1 21.59630424 -4.96760984 3.231031506 0.86498287 1.160472734 0.59433286 0.091012509 0.146467831 3.158256757 0.02417973 0.054488683 1.08E-05 4.96760984 0.295489864 S(ph)PHKDLGHR ddPTM_HeLa_A486_30min_R1 1 SPHKDLGHR 9 1 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 S(1)PHKDLGHR 53.967 0.026186 17799000 23579 12032 13027 6395.5 10877 30012 15040 14173 32013 30500 TRUE FALSE FALSE 21926.23386 11078.5405 18071.40328 14889.04721 9512.705236 26309.42458 11276.83292 10946.11729 34787.91262 22862.60148 0.959043698 0.484570424 0.790435126 0.65124029 0.416081488 1.150762506 0.493243647 0.478778292 1.521607795 1 14.48070195 -7.757609121 24.99999992 1.260803951 0.675293314 0.462376914 0.25135345 75.02981467 489743.5717 0.175109379 0.060514532 1.75E-08 7.757609121 -0.585510636 S(ph)PHLWK ddPTM_HeLa_A485_30min_R1 4 SPHLWK 6 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 S(1)PHLWK;S(1)PHLWK;S(1)PHLWK;S(1)PHLWK ;;; 98.997 0.0091324 895000000 1442690 1366600 1022130 1472560 1174700 1255580 1381070 1091770 1212260 1989100 TRUE FALSE FALSE 1763611.413 1526411.982 1400258.421 1553002.224 1057742.743 1321320.227 1085993.112 824011.6957 1455549.462 1493253.977 1.181052548 1.022205202 0.937722881 1.040012113 0.708347515 0.884859674 0.727266178 0.55182287 0.9747501 1 20.51002813 -4.945938123 0.781251932 0.782454031 1.199815765 0.391606949 0.139198986 1.131469831 0.979871096 0.059771615 0.351224218 1.13E-05 4.945938123 0.417361734 S(ph)PHLWK ddPTM_HeLa_A486_30min_R1 4 SPHLWK 6 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 S(1)PHLWK;S(1)PHLWK;S(1)PHLWK;S(1)PHLWK ;;; 113.89 0.0049755 438780000 2448470 2391870 1207440 608712 1479990 1960220 1810270 1693510 1829570 2674870 TRUE FALSE FALSE 2276844.897 2202329.51 1674993.104 1417112.299 1294355.854 1718387.986 1357321.299 1307934.742 1988158.601 2005065.142 1.135546596 1.098383022 0.835380891 0.706766214 0.645543043 0.857023521 0.676946235 0.652315336 0.991568084 1 20.93521768 -4.793419092 3.475254493 0.767614207 1.130575122 0.517833364 0.123512513 0.155962401 3.865450161 0.031672221 0.083188199 1.61E-05 4.793419092 0.362960914 S(ph)PHPSSALHFPTTSILPQTASTYFPHTAIR ddPTM_HeLa_A485_30min_R1 2 SPHPSSALHFPTTSILPQTASTYFPHTAIR 30 0 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 S(0.996)PHPS(0.002)S(0.002)ALHFPTTSILPQTASTYFPHTAIR;S(0.906)PHPS(0.047)S(0.047)ALHFPTTSILPQTASTYFPHTAIR ; 204.5 4.29E-29 306370000 41440 66810 80193 25813 81934 67331 76661 69324 62371 59165 TRUE FALSE FALSE 50658.18503 74622.84833 109859.7278 27223.09883 73776.36327 70856.34705 60281.75109 52322.1803 74888.2876 44416.25435 1.140532577 1.680079724 2.473412705 0.612908477 1.661021722 1.595279658 1.35720024 1.177996233 1.686055898 1 15.43880011 -12.28854332 0.16056299 1.12E-13 1.649261821 0.088808384 0.457984125 175.1916741 2.681508364 61.24493276 2.095188611 5.15E-13 12.28854332 1.649261821 S(ph)PHPSSALHFPTTSILPQTASTYFPHTAIR ddPTM_HeLa_A486_30min_R1 1 SPHPSSALHFPTTSILPQTASTYFPHTAIR 30 0 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 S(0.923)PHPS(0.038)S(0.038)ALHFPTTSILPQTASTYFPHTAIR 161.05 2.87E-14 122480000 52385 58642 67041 17540 67779 54115 54759 61579 60746 55882 TRUE FALSE FALSE 48713.08202 53994.99435 93001.07062 40834.00642 59277.52581 47438.8415 41057.71902 47558.80596 66011.51219 41888.78347 1.162914699 1.289008414 2.220190297 0.974819583 1.41511691 1.132495088 0.980160215 1.135358968 1.57587561 1 15.35427637 S(ph)PHQLLS(ph)PS(ph)SFSPSATPSQK ddPTM_HeLa_A486_30min_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 3 0 S(1)PHQLLS(0.997)PS(0.658)S(0.297)FS(0.043)PS(0.004)AT(0.001)PSQK 63.138 0.010663 273290000 252780 257660 149950 98904 289710 222140 274210 308720 175170 250610 TRUE FALSE FALSE 235061.4274 237242.0832 208014.6558 230253.5103 253371.8704 194734.6254 205599.7577 238431.1953 190353.8766 187855.6248 1.251287672 1.262895819 1.107311298 1.22569399 1.348758498 1.03661855 1.094456224 1.269225745 1.013298786 1 17.51926479 -6.27611625 24.96844866 1.100279995 1.23243017 0.423929565 0.089870649 951.635019 1618926.764 0.031956803 0.02830182 5.30E-07 6.27611625 0.132150175 S(ph)PHQLLS(ph)PSS(ph)FSPSATPSQK ddPTM_HeLa_A485_30min_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 3 0 S(1)PHQLLS(0.999)PS(0.225)S(0.548)FS(0.213)PS(0.013)AT(0.003)PSQK 100.24 0.00016209 299950000 228430 245240 208550 271700 333580 284550 347110 366630 238270 351190 TRUE FALSE FALSE 279243.4654 273918.6847 285701.3235 286542.283 300367.6039 299448.598 272947.1129 276713.4176 286088.6035 263644.7962 1.059165474 1.038968676 1.083660014 1.086849758 1.139288954 1.13580318 1.035283521 1.049569048 1.08512896 1 18.008236 -8.610409402 0.725641036 0.999303463 1.084100653 0.327174085 0.034230079 2.823676769 2.251541324 0.046568842 0.013995456 2.45E-09 8.610409402 0.084797191 S(ph)PHQLLS(ph)PSSFS(ph)PSATPSQK ddPTM_HeLa_A485_30min_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 3 0 S(1)PHQLLS(0.984)PS(0.097)S(0.254)FS(0.598)PS(0.06)AT(0.008)PS(0.001)QK 84.664 0.00086899 424290000 332060 356070 264710 401090 451160 401050 441870 508720 341630 488880 TRUE FALSE FALSE 405925.6014 397709.2891 362637.2445 423000.5311 406240.9263 422048.3579 347460.8648 383955.6224 410192.0074 367011.2132 1.106030516 1.083643428 0.988082193 1.152554788 1.106889685 1.14996039 0.946730923 1.046168642 1.117655245 1 18.48546462 -10.41779305 6.002116452 0.999975818 1.07550522 0.117559809 0.06350282 2.10E-05 2.03E-06 0.06273637 0.015210935 3.82E-11 10.41779305 0.075529402 S(ph)PHQLLSPSSFS(ph)PSATPSQK ddPTM_HeLa_A485_30min_R1 2 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 S(1)PHQLLSPS(0.002)S(0.03)FS(0.95)PS(0.015)AT(0.004)PSQK;S(1)PHQLLSPSS(0.036)FS(0.932)PS(0.032)ATPSQK ; 207.18 1.59E-26 1142170000 612260 737820 700070 649510 992590 835900 1015410 1082550 746150 904670 TRUE FALSE FALSE 748455.1247 824101.6308 959055.0253 684991.0867 893764.2544 879666.4315 798459.3584 817052.9151 895895.4609 679152.4182 1.102042936 1.213426631 1.412135184 1.008596993 1.315999517 1.295241551 1.175670346 1.203047936 1.319137556 1 19.37337586 -10.12127274 6.353796184 0.999999404 1.228235709 0.275750092 0.110479439 8.95E-07 1.24E-07 0.102634822 0.024892536 7.56E-11 10.12127274 0.228236305 S(ph)PHQLLSPSSFS(ph)PSATPSQK ddPTM_HeLa_A486_30min_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 2 0 S(0.999)PHQLLS(0.001)PSS(0.001)FS(0.997)PS(0.001)ATPSQK 147.85 1.65E-09 510370000 334410 310380 219350 75469 358370 337160 356270 374810 280040 348690 TRUE FALSE FALSE 310969.5859 285784.3584 304288.1944 175695.646 313419.8929 295564.6272 267127.4778 289473.945 304314.0927 261375.7544 1.189741514 1.093385112 1.164179115 0.672195653 1.199116168 1.130803536 1.022005573 1.107501136 1.164278199 1 17.9957658 S(ph)PHQLLSPSSFSPSATPSQK ddPTM_HeLa_A485_30min_R1 4 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 S(1)PHQLLSPSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK ;;; 225.48 1.12E-35 3380660000 1753800 2303380 1834460 1620140 2547310 2116530 2755920 2879140 1967810 2446860 TRUE FALSE FALSE 2143926.759 2572740.254 2513103.092 1708644.146 2293690.872 2227348.238 2167095.178 2173026.401 2362731.417 1836902.833 1.16714217 1.400585925 1.368119776 0.930176662 1.248672946 1.212556374 1.179754933 1.182983858 1.286258247 1 20.80884388 -14 0.202359798 0.035575895 1.251732298 0.213149046 0.123230307 236.5209926 2.345030655 92.94471337 0.298436893 1.00E-14 14 1.216156403 S(ph)PHQLLSPSSFSPSATPSQK ddPTM_HeLa_A486_30min_R1 4 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 S(1)PHQLLSPSSFSPSATPSQK;S(0.999)PHQLLS(0.001)PSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK ;;; 206.11 2.28E-28 1739290000 2374670 2387740 1644390 329117 2424600 2281450 2461830 2559470 2049770 2095030 TRUE FALSE FALSE 2208217.896 2198526.786 2281141.846 766201.0087 2120484.06 1999987.895 1845854.095 1976734.554 2227445.714 1570420.852 1.406131289 1.399960262 1.452567217 0.487895336 1.35026484 1.273536258 1.175388173 1.258729182 1.418375025 1 20.5827198 S(ph)PHRS(ph)SPSDTRPK ddPTM_HeLa_A485_30min_R1 3 SPHRSSPSDTRPK 13 2 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 S(1)PHRS(0.55)S(0.439)PS(0.01)DT(0.001)RPK;S(1)PHRS(0.509)S(0.319)PS(0.119)DT(0.053)RPK;S(1)PHRS(0.537)S(0.458)PS(0.005)DTRPK ;; 94.203 0.00082656 1091733000 271513 601804 462664 128122 593089 447449 513168 625066 441541 237844 TRUE FALSE FALSE 331910.1301 672179.7428 633822.6667 135120.9804 534038.9767 470876.7378 403525.4646 471767.5834 530154.2286 178553.868 1.85887953 3.764576765 3.549756014 0.756751909 2.990912394 2.637169069 2.259964845 2.642158295 2.969155665 1 17.44599986 -10.1799814 5.201396082 0.999912361 2.614390081 0.259041991 0.813264378 0.000824362 0.000129965 0.785262546 0.190444016 6.61E-11 10.1799814 1.614477719 S(ph)PHRS(ph)SPSDTRPK ddPTM_HeLa_A486_30min_R1 4 SPHRSSPSDTRPK 13 2 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 2 0 S(1)PHRS(0.535)S(0.421)PS(0.043)DT(0.001)RPK;S(0.997)PHRS(0.536)S(0.46)PS(0.006)DTRPK;S(0.995)PHRS(0.532)S(0.463)PS(0.01)DTRPK;S(0.999)PHRS(0.533)S(0.461)PS(0.007)DTRPK ;;; 88.427 0.0011303 410277000 499496 495791 377406.5 41078.3 507224 329881 374168 332815 444954 181945 TRUE FALSE FALSE 464483.9098 456502.7155 523548.4041 95632.35838 443603.2362 289183.6362 280547.2089 257040.2898 483522.971 136384.7877 3.405687082 3.347167401 3.838759533 0.701195199 3.25258589 2.120351111 2.057027133 1.884669794 3.545285211 1 17.05732321 -5.218254321 24.99996104 2.166581264 3.512201409 0.389958859 0.826277018 499.0774831 288916.7957 0.211340871 0.366050246 6.05E-06 5.218254321 1.345620145 S(ph)PHRSSPSDTRPK ddPTM_HeLa_A485_30min_R1 1 SPHRSSPSDTRPK 13 2 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 1 0 S(0.333)PHRS(0.333)S(0.333)PS(0.002)DTRPK 53.403 0.020629 30659000 33687 81194 61042 12350 75773 70785 77992 112480 63332 29890 TRUE FALSE FALSE 41180.55693 90688.93201 83623.97597 13024.64923 68228.77406 74491.19315 61328.37206 84894.10364 76042.15148 22438.97308 1.835224668 4.041581211 3.726729189 0.580447651 3.040637101 3.319723807 2.733118482 3.783332834 3.38884276 1 14.45371903 S(ph)PHRSSPSDTRPK ddPTM_HeLa_A486_30min_R1 2 SPHRSSPSDTRPK 13 2 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 1 0 S(0.333)PHRS(0.333)S(0.333)PS(0.001)DTRPK;S(0.333)PHRS(0.333)S(0.333)PSDTRPK ; 48.823 0.025578 42531000 113216 89777 93686 5628 126565 71981 90440 83101 103155 38670 TRUE FALSE FALSE 105280.143 82662.74356 129963.7282 13102.26842 110690.0375 63100.71607 67810.95542 64180.71638 112096.5585 28986.7803 3.632005416 2.851739403 4.483551704 0.452008408 3.818638579 2.176879095 2.339375216 2.214137469 3.86716142 1 14.82310747 -5.217132091 24.9999677 2.381397715 3.575362381 0.258054316 1.064292359 694.053134 391611.9888 0.271110752 0.46957468 6.07E-06 5.217132091 1.193964665 S(ph)PHS(ph)PSPIATPPSQSSSCSDAPMLSTVHSAK ddPTM_HeLa_A485_30min_R1 1 SPHSPSPIATPPSQSSSCSDAPMLSTVHSAK 31 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.999)PHS(0.627)PS(0.372)PIAT(0.001)PPSQSSSCSDAPMLSTVHSAK 134.74 6.62E-07 158370000 67564 85863 75158 68249 97936 82487 99902 101560 85289 79675 TRUE FALSE FALSE 82593.37871 95903.93094 102962.0718 71977.27005 88185.14797 86805.89177 78557.12158 76652.25076 102405.72 59813.48881 1.380848707 1.603382997 1.721385491 1.203361842 1.474335467 1.451276184 1.31336799 1.281521147 1.712084047 1 15.86818325 -11.14668417 2.330287688 0.000160741 1.45509773 0.406061356 0.166860544 2707024.037 846043.4878 14261783.67 0.042916653 7.13E-12 11.14668417 1.454936988 S(ph)PHSTVPEHHPHPISPYEHLLR ddPTM_HeLa_A485_30min_R1 2 SPHSTVPEHHPHPISPYEHLLR 22 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.993)PHS(0.003)T(0.003)VPEHHPHPISPYEHLLR;S(0.997)PHS(0.002)T(0.002)VPEHHPHPISPYEHLLR ; 220.28 2.38E-36 1844080000 124825 233710 176600 129816 198751 135321 158999 208128 152298 189866 TRUE FALSE FALSE 152591.8906 261040.3515 241931.6889 136907.5194 178962.6526 142406.1983 125027.5647 157084.2817 182862.8116 142535.9004 1.070550578 1.831400726 1.697338623 0.960512537 1.255561946 0.999090039 0.877165433 1.102068189 1.28292459 1 17.12096581 -5.263237831 24.98976923 1.069410568 1.562927061 0.488494923 0.217362857 124.755683 1733507.096 0.059857835 0.094217093 5.45E-06 5.263237831 0.493516493 S(ph)PHSTVPEHHPHPISPYEHLLR ddPTM_HeLa_A486_30min_R1 3 SPHSTVPEHHPHPISPYEHLLR 22 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.999)PHSTVPEHHPHPISPYEHLLR;S(0.999)PHSTVPEHHPHPISPYEHLLR;S(0.998)PHS(0.001)T(0.001)VPEHHPHPISPYEHLLR ;; 228.64 9.24E-37 2200110000 384434 363527 228764 470620.3 336272 396968 442068 531295 226324 780921 TRUE FALSE FALSE 357487.1618 334719.7966 317347.5473 1095627.842 294093.6301 347994.1242 331457.9107 410330.7266 245941.9465 585373.2987 0.610699468 0.571805713 0.542128498 1.871673759 0.502403562 0.594482401 0.566233396 0.700972743 0.420145482 1 19.15899741 S(ph)PIALPVK ddPTM_HeLa_A485_30min_R1 6 SPIALPVK 8 0 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK ;;;;; 105.4 0.0014359 3486260000 3512920 2941420 2858370 4477990 3546260 2705870 3558530 2637130 2949190 5343770 TRUE FALSE FALSE 4294356.935 3285393.482 3915800.01 4722611.255 3193181.903 2847545.169 2798220.995 1990369.733 3541065.381 4011666.484 1.070467087 0.818959775 0.97610308 1.177219311 0.795973921 0.709816028 0.697520845 0.496145365 0.882691868 1 21.93577024 -5.947851735 8.539802509 0.725344321 0.994370715 0.387033889 0.149696946 0.272340958 40.59651905 0.045684336 0.05179098 1.13E-06 5.947851735 0.269026394 S(ph)PIALPVK ddPTM_HeLa_A486_30min_R1 6 SPIALPVK 8 0 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK;S(1)PIALPVK ;;;;; 143.86 0.00036154 4307960000 3956260 6111810 3331470 1726760 4732240 5844060 5635600 5243590 4634770 5464650 TRUE FALSE FALSE 3678946.604 5627487.917 4621504.404 4019984.546 4138678.333 5123079.295 4225513.273 4049739.024 5036515.595 4096266.071 0.898121982 1.373809176 1.128223686 0.98137779 1.010353884 1.250670539 1.031552443 0.988641595 1.229538196 1 21.965878 S(ph)PIALPVKQEPPQIDAVK ddPTM_HeLa_A486_30min_R1 2 SPIALPVKQEPPQIDAVK 18 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(1)PIALPVKQEPPQIDAVK;S(1)PIALPVKQEPPQIDAVK ; 127.28 5.25E-06 483370000 200562 270397 180038 200869 444230 374290 481960 541800 222472 345200 TRUE FALSE FALSE 186503.6395 248969.757 249753.5352 467633.1834 388510.5311 328113.9053 361368.5103 418443.9674 241756.0521 258759.6731 0.720760068 0.96216599 0.965194971 1.807210442 1.501433846 1.26802566 1.396541068 1.617114299 0.934287979 1 17.98125327 -5.069342412 9.362984011 1.390200615 0.871559473 0.428124164 0.253735157 0.386777194 50.29516864 0.066975915 0.116453756 8.52E-06 5.069342412 -0.518641142 S(ph)PIINESR ddPTM_HeLa_A485_30min_R1 4 SPIINESR 8 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(1)PIINESR;S(1)PIINESR;S(1)PIINESR;S(1)PIINESR ;;; 115.91 0.00095988 3325930000 302294 249081 364653 447056 534216 268857 380677 346452 374529 580756 TRUE FALSE FALSE 369538.2574 278208.8562 499553.3192 471477.5373 481027.5793 282933.9368 299342.2491 261484.1038 449693.5349 435984.2172 0.847595493 0.638116806 1.145805971 1.081409644 1.103314203 0.648954539 0.686589645 0.599755894 1.031444527 1 18.73391638 -6.266470654 24.92967237 0.761661213 0.961892154 0.157122014 0.189774454 711.0006155 3522954.001 0.068819829 0.062582313 5.41E-07 6.266470654 0.200230941 S(ph)PIINESR ddPTM_HeLa_A486_30min_R1 4 SPIINESR 8 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(1)PIINESR;S(1)PIINESR;S(1)PIINESR;S(1)PIINESR ;;; 116.75 0.00092229 5311240000 291031 587050 527608 200436 704130 569480 624080 684470 510677 450123 TRUE FALSE FALSE 270631.2298 540530.02 731911.9474 466625.1375 615811.4496 499223.3476 467928.5832 528631.1229 554942.8935 337409.271 0.802085933 1.60200109 2.169211134 1.382964778 1.825117158 1.479578039 1.386827878 1.566735619 1.644717384 1 18.36414009 -6.501756359 23.81143214 1.444855942 1.590150618 0.030098757 0.362035361 1833.63095 2067072.819 0.129271001 0.112696113 3.15E-07 6.501756359 0.145294677 S(ph)PIKASDLTK ddPTM_HeLa_A485_30min_R1 2 SPIKASDLTK 10 1 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 S(1)PIKASDLTK;S(1)PIKASDLTK ; 102.52 0.00063593 1855920000 2116610 2263830 1055530 2307500 2238370 2933350 4155740 4537840 1750970 3098730 TRUE FALSE FALSE 2587442.592 2528565.226 1446014.471 2433552.882 2015510.023 3086935.67 3267832.2 3424927.625 2102373.618 2326273.639 1.112269231 1.086959498 0.621601194 1.046116347 0.86641141 1.326987341 1.404749701 1.472280633 0.903751641 1 21.14958938 -6.262638988 24.97148817 1.262521149 0.941930556 0.293027394 0.208622676 122.5406484 2550829.384 0.071304576 0.066396926 5.46E-07 6.262638988 -0.320590594 S(ph)PIKASDLTK ddPTM_HeLa_A486_30min_R1 2 SPIKASDLTK 10 1 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 S(1)PIKASDLTK;S(1)PIKASDLTK ; 113.59 0.00028005 2925700000 2387500 1749600 621690 1062800 1566500 1953800 2718900 2523700 1088300 3696700 TRUE FALSE FALSE 2220148.579 1610955.324 862425.0174 2474252.111 1370014.963 1712760.021 2038602.462 1949108.602 1182634.72 2771022.259 0.801202001 0.581357771 0.311229913 0.892902287 0.49440778 0.618096811 0.735686065 0.703389731 0.426786438 1 21.40198687 -11.01095255 3.029627573 1.4116988 0.618595493 0.320797616 0.166602346 237434242.9 393334071.9 677875510.3 0.040165109 9.75E-12 11.01095255 -0.793103307 S(ph)PIKESLFR ddPTM_HeLa_A486_30min_R1 1 SPIKESLFR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 S(0.998)PIKES(0.002)LFR 45.077 0.031158 295020000 96634 101600 81952 43727 101960 95793 105970 104970 61224 117090 TRUE FALSE FALSE 89860.45562 93548.84598 113686.0092 101798.6658 89171.22606 83975.03361 79455.18516 81070.62248 66530.94562 87769.90187 1.023818572 1.06584198 1.295273285 1.159835703 1.015965885 0.956763444 0.905266879 0.923672247 0.758015495 1 16.42143867 -6.132403661 1.912606159 0.894571776 1.141113084 0.596646439 0.088008234 0.242515592 1.755525168 0.035762821 0.03584354 7.37E-07 6.132403661 0.246541308 S(ph)PILEEK ddPTM_HeLa_A485_30min_R1 5 SPILEEK 7 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 S(1)PILEEK;S(1)PILEEK;S(1)PILEEK;S(1)PILEEK;S(1)PILEEK ;;;; 107.15 0.0032916 4245630000 2996950 2888660 1959350 3640900 2946620 2989930 3982450 3564150 2566420 5033330 TRUE FALSE FALSE 3663611.188 3226463.659 2684195.1 3839793.148 2653244.167 3146478.111 3131567.024 2690036.624 3081476.953 3778613.463 0.969564954 0.853875023 0.710365092 1.016191041 0.70217401 0.832707061 0.828760881 0.711911036 0.815504678 1 21.84942551 -4.315429 3.989725365 0.817625779 0.9762131 0.135049134 0.104578197 0.364542104 10.81031602 0.024629621 0.146405513 4.84E-05 4.315429 0.158587321 S(ph)PILEEK ddPTM_HeLa_A486_30min_R1 4 SPILEEK 7 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 S(1)PILEEK;S(1)PILEEK;S(1)PILEEK;S(1)PILEEK ;;; 120.99 0.0019783 2622250000 2984640 2690590 1234122 993622 1998260 2644460 3144030 2783370 2151600 3693280 TRUE FALSE FALSE 2775432.149 2477377.849 1712007.089 2313202.231 1747619.598 2318213.412 2357360.44 2149657.412 2338102.42 2768458.649 1.002518911 0.894858173 0.618397205 0.835555999 0.631260864 0.837366097 0.851506466 0.776481676 0.844550241 1 21.40065154 -8.127560372 4.273324724 0.999986745 0.800671218 0.221974769 0.108302959 1.224027628 38.57016084 0.106104836 0.027788158 7.45E-09 8.127560372 -0.199315527 S(ph)PILEEKDIPPLEFPK ddPTM_HeLa_A485_30min_R1 3 SPILEEKDIPPLEFPK 16 1 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 S(1)PILEEKDIPPLEFPK;S(1)PILEEKDIPPLEFPK;S(1)PILEEKDIPPLEFPK ;; 116.98 5.14E-05 415360000 87565 82268 68406 135432 228825 168294 291392 415460 132905 282590 TRUE FALSE FALSE 107043.5322 91888.52696 93712.22601 142830.3072 206042.3795 177105.6136 229133.7187 313567.7836 159577.8144 212145.5137 0.504575988 0.433139148 0.441735601 0.673265745 0.971231378 0.834830822 1.080078078 1.478078787 0.752209234 1 17.69469464 -5.739303684 1.162763928 1.088750376 0.429983183 0.662004784 0.181484311 0.275433645 0.786857791 0.075202994 0.113613005 1.82E-06 5.739303684 -0.658767193 S(ph)PILEEKDIPPLEFPK ddPTM_HeLa_A486_30min_R1 2 SPILEEKDIPPLEFPK 16 1 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 S(1)PILEEKDIPPLEFPK;S(1)PILEEKDIPPLEFPK ; 177 3.13E-13 393040000 421080 390280 281280 436440 782690 602710 1101120 1130470 355940 703230 TRUE FALSE FALSE 391564.4665 359352.7914 390199.1489 1016054.376 684517.7219 528353.7681 825608.1295 873086.659 386793.1658 527136.6307 0.742813995 0.681707114 0.740223931 1.927497194 1.298558442 1.00230896 1.566212783 1.656281518 0.73376264 1 19.00781742 -5.092816003 14.26530462 1.336532381 0.711936338 0.3993588 0.331033609 1.431539799 217.560227 0.088142932 0.152694067 8.08E-06 5.092816003 -0.624596043 S(ph)PILLPK ddPTM_HeLa_A485_30min_R1 6 SPILLPK 7 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK ;;;;; 97.431 0.0051356 9091000000 4375520 3717710 3101300 4980720 4180120 3751590 5008140 4200680 3793810 6211250 TRUE FALSE FALSE 5348839.329 4152463.845 4248599.926 5252804.122 3763932.576 3948017.451 3938109.976 3170456.644 4555192.868 4662899.685 1.147105812 0.890532528 0.911149759 1.126510214 0.807208568 0.846687194 0.844562449 0.679932415 0.976901322 1 22.15279596 -5.783499856 24.99887434 0.841852863 1.001969847 0.312651447 0.113110188 277.6054532 314580.1914 0.033970066 0.038549741 1.65E-06 5.783499856 0.160116984 S(ph)PILLPK ddPTM_HeLa_A486_30min_R1 6 SPILLPK 7 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK;S(1)PILLPK ;;;;; 112.84 0.0027516 8575780000 5784660 6446530 3482900 1980870 4970470 6065860 6509850 6021920 4818010 6836020 TRUE FALSE FALSE 5379185.206 5935683.485 4831572.155 4611565.468 4347027.305 5317515.866 4881016.676 4650860.274 5235638.986 5124236.097 1.049753584 1.158354801 0.942886328 0.899951794 0.848326896 1.037718748 0.952535477 0.907620216 1.02174039 1 22.28890552 -4.773171385 24.992213 0.945660429 1.104054184 0.505969324 0.060148086 144.512607 307850.9514 0.015687872 0.033084076 1.69E-05 4.773171385 0.158393756 S(ph)PIRGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SPIRGSPR 8 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 S(1)PIRGS(1)PR 63.727 0.0037372 0 204070 212650 204400 204110 190280 195500 200990 181600 191160 246460 TRUE FALSE FALSE 249464.6675 237517.5677 280016.0658 215260.0125 171335.0551 205736.0777 158046.8446 137062.3153 229524.0586 185022.0578 1.348296903 1.283725684 1.513419909 1.163428918 0.926025022 1.111954327 0.85420542 0.740789055 1.240522678 1 17.49733775 -5.531560218 4.005737302 0.968225516 1.371205183 0.627892968 0.138650462 0.135264236 4.972778144 0.041076968 0.057318002 2.94E-06 5.531560218 0.402979666 S(ph)PIRGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SPIRGSPR 8 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 S(1)PIRGS(1)PR;S(1)PIRGS(1)PR ; 105.03 0.0015984 639680000 619710 724730 488810 264290 634690 680560 610720 595810 604760 778880 TRUE FALSE FALSE 576271.5292 667299.7554 678090.3228 615280.4765 555081.262 596599.4266 457911.3965 460157.0694 657181.0837 583843.3783 0.987031027 1.142943091 1.161425046 1.053845088 0.950736589 1.021848408 0.784305198 0.78815156 1.12561195 1 19.15522188 -5.797651283 1.932284856 0.921272184 1.103401406 0.290928845 0.106386865 0.379234738 2.917403608 0.037795209 0.048057595 1.59E-06 5.797651283 0.182129223 S(ph)PIRQDR ddPTM_HeLa_A485_30min_R1 8 SPIRQDR 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR ;;;;;;; 104.43 0.0017222 11542580000 1645910 1474901 746340 1868399 594096 1741525 939684 1288289 1413472 1844016 TRUE FALSE FALSE 2012037.001 1647377.842 1022442.224 1970464.906 534945.7162 1832708.556 738912.8369 972334.1028 1697142.865 1384336.748 1.453430319 1.190012361 0.738579125 1.423399985 0.386427448 1.323889262 0.533766685 0.702382642 1.225961001 1 20.4007635 -3.512908381 0.865179178 0.886605533 3.014552683 0.205007431 0.324879853 10.67197588 2.444196546 0.105705761 29.30454545 0.000306967 3.512908381 2.12794715 S(ph)PIRQDR ddPTM_HeLa_A486_30min_R1 6 SPIRQDR 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR;S(1)PIRQDR ;;;;; 87.789 0.0035526 5694660000 1036387 463005 1063557 377145.3 380935.8 1769338 553853 560010 1487065 1183034 TRUE FALSE FALSE 963741.6232 426314.7976 1475394.753 878013.3183 333155.2799 1551055.067 415273.1213 432507.9479 1615964.992 886794.5861 1.086769854 0.480736807 1.663739017 0.990097743 0.375684837 1.749057889 0.468285585 0.487720555 1.822254011 1 19.75824044 -7.763020316 24.99995882 1.411126779 0.921129312 0.137388021 0.499153873 85.35751119 1349580.675 0.392568826 0.122034108 1.73E-08 7.763020316 -0.489997467 S(ph)PISFLSK ddPTM_HeLa_A486_30min_R1 1 SPISFLSK 8 0 Q7RTP6;J3KSK6;A0A5F9ZHV5;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 S(1)PISFLSK 105.98 0.0014097 150380000 185470 169590 103690 68934 164690 169230 172310 184620 133280 177180 TRUE FALSE FALSE 172469.5108 156151.0708 143841.5449 160481.8357 144033.0445 148352.1232 129196.2155 142586.0562 144832.8177 132812.9748 1.298589321 1.175721507 1.083038349 1.208329503 1.084480223 1.117000229 0.972768028 1.073585292 1.090502023 1 17.01903657 -1 0.29530666 1.028660144 3.084683451 0.662610201 0.053114945 33.74818549 0.480341932 0.05583327 36.46047529 0.1 1 2.056023307 S(ph)PISPELHSAPLTPVAR ddPTM_HeLa_A485_30min_R1 3 SPISPELHSAPLTPVAR 17 0 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A0G2JQF4;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 S(0.995)PIS(0.005)PELHSAPLTPVAR;S(0.999)PIS(0.001)PELHSAPLTPVAR;S(0.997)PIS(0.003)PELHSAPLTPVAR ;; 142.23 3.76E-08 554620000 428580 564820 537960 425890 542880 466880 520980 478720 497760 585400 TRUE FALSE FALSE 523916.1424 630870.7857 736973.7904 449155.2923 488828.961 491325.1149 409668.367 361313.1694 597655.8663 439470.5535 1.192153008 1.435524589 1.676958296 1.022037287 1.112313344 1.117993256 0.932186158 0.822155584 1.359945192 1 18.74540698 -5.283965264 24.48830136 1.04518916 1.434943229 0.512866604 0.17073018 462.3625331 502641.757 0.04813583 0.071459504 5.20E-06 5.283965264 0.389754068 S(ph)PISPELHSAPLTPVAR ddPTM_HeLa_A486_30min_R1 2 SPISPELHSAPLTPVAR 17 0 A0A1W2PRB5;A0A0J9YVS1;A0A3B3IT55;A0A0G2JNB1;A0A0G2JNT7;Q7Z3B3;A0A0G2JQF5;A0A0G2JQF4;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 S(0.999)PIS(0.001)PELHSAPLTPVAR;S(0.998)PIS(0.002)PELHSAPLTPVAR ; 160.02 6.51E-12 479060000 306010 373910 262220 61066 302180 262940 291990 254480 278870 286120 TRUE FALSE FALSE 284560.2792 344280.0098 363758.6065 142164.7341 264277.7667 230501.1362 218931.0136 196540.4593 303042.6761 214473.6897 1.32678409 1.605231907 1.696052355 0.662853958 1.232215322 1.074729197 1.020782614 0.91638494 1.412959681 1 17.71044115 -5.24317509 24.96854929 1.050162033 1.548943725 0.557904739 0.202686134 582.685911 796570.9491 0.052877841 0.091361385 5.71E-06 5.24317509 0.498781692 S(ph)PISVPGGSALISNLGK ddPTM_HeLa_A485_30min_R1 2 SPISVPGGSALISNLGK 17 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 S(1)PISVPGGSALISNLGK;S(0.998)PIS(0.002)VPGGSALISNLGK ; 241.79 2.08E-42 869400000 619350 529140 444020 671850 592270 527320 638530 494830 504160 813760 TRUE FALSE FALSE 757122.2708 591018.3201 608281.4752 708551.4643 533301.5192 554929.6598 502102.8492 373472.1666 605340.2876 610904.6081 1.239346145 0.967447802 0.99570615 1.159839777 0.872970202 0.908373668 0.821900576 0.611342854 0.99089167 1 19.2205876 -5.847012718 6.419142293 0.845530066 1.074427525 0.424718339 0.125234029 0.204063728 12.42306169 0.038760297 0.044240556 1.42E-06 5.847012718 0.228897458 S(ph)PISVPGGSALISNLGK ddPTM_HeLa_A486_30min_R1 2 SPISVPGGSALISNLGK 17 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 S(0.997)PIS(0.003)VPGGSALISNLGK;S(0.987)PIS(0.013)VPGGSALISNLGK ; 149 5.51E-08 877380000 1309500 1329620 753760 360590 975880 1134730 1278430 1203580 1044230 1461930 TRUE FALSE FALSE 1217710.812 1224256.069 1045636.058 839471.7432 853476.0307 994738.5497 958553.2921 929551.108 1134744.697 1095853.212 1.111198834 1.117171584 0.954175291 0.766043968 0.778823314 0.907729738 0.87470957 0.848244179 1.035489684 1 20.06362313 -4.873295414 3.787469432 0.875731741 1.115706354 0.548156661 0.080544277 0.153422469 4.103739259 0.021785718 0.050984437 1.34E-05 4.873295414 0.239974614 S(ph)PKPAAPAAPPFSSSSGVLGTGLCELDR ddPTM_HeLa_A485_30min_R1 4 SPKPAAPAAPPFSSSSGVLGTGLCELDR 28 1 O43294-2;O43294;H3BSN4;H3BQC4;H3BS04;H3BN49 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR ;;; 219.73 1.38E-38 8785400000 1890610 1562190 1221360 2290490 1897740 1581670 2028130 1662380 1401510 2964060 TRUE FALSE FALSE 2311169.672 1744874.531 1673191.889 2415613.669 1708794.342 1664483.795 1594803.457 1254678.698 1682780.202 2225174.391 1.038646535 0.784151812 0.751937419 1.085583979 0.767937268 0.748023976 0.716709424 0.563856345 0.756246435 1 21.08548698 -5.978291409 24.99879391 0.730613041 0.898160655 0.220936728 0.138120848 335.4627489 386304.4067 0.042072107 0.047701908 1.05E-06 5.978291409 0.167547614 S(ph)PKPAAPAAPPFSSSSGVLGTGLCELDR ddPTM_HeLa_A486_30min_R1 4 SPKPAAPAAPPFSSSSGVLGTGLCELDR 28 1 O43294-2;O43294;H3BSN4;H3BQC4;H3BS04;H3BN49 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 S(0.999)PKPAAPAAPPFS(0.001)SSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR ;;; 169.13 2.53E-14 8721300000 712513 844792 414861 346168 604613 813613 938120 915342 578705 1064062 TRUE FALSE FALSE 662569.5181 777847.6052 575506.2896 805896.5984 528776.7997 713237.7003 703392.4536 706938.6084 628867.6154 797613.9493 0.830689482 0.975218156 0.721534885 1.010384283 0.662948285 0.894214176 0.881870803 0.886316756 0.78843608 1 19.60533112 -10.13099314 5.967514431 1.000000961 0.852568414 0.165779988 0.100696564 1.18E-06 1.72E-07 0.089580398 0.021726296 7.40E-11 10.13099314 -0.147432548 S(ph)PLAAKS(ph)PPSLHLLEAFK ddPTM_HeLa_A485_30min_R1 2 SPLAAKSPPSLHLLEAFK 18 1 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 2 0 S(0.999)PLAAKS(0.915)PPS(0.086)LHLLEAFK;S(0.991)PLAAKS(0.55)PPS(0.459)LHLLEAFK ; 119.02 0.00011238 50653000 86730 84603 57306 90396 146950 108625 188465 187290 92383 157518 TRUE FALSE FALSE 106022.7893 94496.5849 78505.8741 95334.10459 132319.142 114312.437 148197.9131 141356.8338 110923.4207 118251.6615 0.896586043 0.799114226 0.663888127 0.806196745 1.118962223 0.966687788 1.253241699 1.195389833 0.938028433 1 16.85150093 -5.737886191 7.083640684 1.091839312 0.781368188 0.634860027 0.106374132 0.106481508 20.33179417 0.032519409 0.04098081 1.83E-06 5.737886191 -0.310471123 S(ph)PLAAKS(ph)PPSLHLLEAFK ddPTM_HeLa_A486_30min_R1 2 SPLAAKSPPSLHLLEAFK 18 1 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 2 0 S(1)PLAAKS(0.98)PPS(0.02)LHLLEAFK;S(0.999)PLAAKS(0.987)PPS(0.014)LHLLEAFK ; 124 3.48E-05 76511000 174636 157443 87550 30472 182815 169996 242670 238800 131497 156971 TRUE FALSE FALSE 162394.9182 144966.6433 121451.7047 70940.35597 159884.638 149023.6219 181951.3993 184430.453 142895.2658 117664.4399 1.380152902 1.232034448 1.032186995 0.602903953 1.358818673 1.266513673 1.546358436 1.56742728 1.214430341 1 16.84431885 -5.925605933 25 1.362457234 1.060484808 0.214942163 0.240857416 56.58587132 19013.79691 0.077355567 0.087712971 1.19E-06 5.925605933 -0.301972427 S(ph)PLAIR ddPTM_HeLa_A485_30min_R1 3 SPLAIR 6 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PLAIR;S(1)PLAIR;S(1)PLAIR ;; 117.18 0.0071965 786280000 206545 267472 220550 170234 208051 213608 227142 213056 188803 209748 TRUE FALSE FALSE 252490.2227 298750.5237 302140.6229 179533.4524 187336.7119 224792.1846 178611.2561 160803.6819 226694.0303 157461.6837 1.603502622 1.897290291 1.918819968 1.140172314 1.189728876 1.427599269 1.134315675 1.0212242 1.439677418 1 17.26464128 -5.263823403 24.9997163 1.201292539 1.815612912 0.758215583 0.158636189 96.29964572 1009836.21 0.04349668 0.068132473 5.45E-06 5.263823403 0.614320373 S(ph)PLAIR ddPTM_HeLa_A486_30min_R1 2 SPLAIR 6 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PLAIR;S(1)PLAIR ; 99.375 0.012362 551030000 174933 182009 117201 41188 134613 133279 139481 134935 149918 192192 TRUE FALSE FALSE 162671.1001 167585.944 162584.366 95887.74553 117728.5823 116836.3921 104581.3785 104213.2461 162913.0129 144065.8722 1.129143895 1.163259149 1.12854185 0.665582654 0.817185781 0.810992848 0.7259275 0.723372194 1.130823077 1 17.13636909 -5.236543844 20.38862043 0.820797268 1.142610456 0.522793885 0.131045006 55.90029933 45778.89196 0.034639314 0.05990483 5.80E-06 5.236543844 0.321813188 S(ph)PLAQMEEER ddPTM_HeLa_A485_30min_R1 2 SPLAQMEEER 10 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 0 S(1)PLAQMEEER;S(1)PLAQMEEER ; 159.66 7.11E-07 1399810000 139973 177226 157737 173656 137335 149874 191615 159126 132062 191753 TRUE FALSE FALSE 171109.5109 197951.039 216090.4803 183142.3876 123661.4452 157721.1709 150674.8899 120100.099 158565.6321 143952.5061 1.188652533 1.375113532 1.501123434 1.272241745 0.859043365 1.095647274 1.046698623 0.834303635 1.101513523 1 17.13523338 -5.625088756 5.583832864 0.990739461 1.361386654 0.7089046 0.10899423 0.109028115 5.048656593 0.032203663 0.041790297 2.37E-06 5.625088756 0.370647193 S(ph)PLAQMEEER ddPTM_HeLa_A486_30min_R1 2 SPLAQMEEER 10 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 0 S(1)PLAQMEEER;S(1)PLAQMEEER ; 170 2.85E-07 1063920000 173006 205939 128233 70248 194455 176640 201935 174693 160458 212685 TRUE FALSE FALSE 160879.1728 189619.6436 177888.2518 163540.8941 170064.6407 154847.9527 151408.7271 134919.2174 174366.6286 159427.2917 1.009106855 1.189380072 1.115795482 1.025802373 1.066722259 0.971276317 0.949703941 0.846274286 1.093706271 1 17.28253909 -5.959158226 1.360132827 0.959104309 1.106256867 0.351216089 0.073413392 0.411736029 1.579961761 0.029947628 0.035001359 1.10E-06 5.959158226 0.147152559 S(ph)PLAQMEEERR ddPTM_HeLa_A485_30min_R1 6 SPLAQMEEERR 11 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 0 S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR ;;;;; 164.22 3.56E-08 10372710000 604467 711975 659169 727551 834386 738635 864915 892836 656808 820246 TRUE FALSE FALSE 738928.5988 795234.2829 903023.0434 767295.2689 751311.6001 777308.7865 680118.8445 673866.5711 788623.341 615773.7677 1.200000126 1.291439039 1.466485081 1.246066833 1.220109786 1.262328516 1.10449467 1.094341147 1.280703048 1 19.23204088 -6.370735476 1.123751508 1.124246357 1.31118489 0.4050574 0.094414207 0.516264351 1.346121939 0.053221477 0.043375992 4.26E-07 6.370735476 0.186938533 S(ph)PLAQMEEERR ddPTM_HeLa_A486_30min_R1 6 SPLAQMEEERR 11 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 0 S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR ;;;;; 182.17 1.06E-10 9554200000 526713 517910 404423 247284.9 563715 501184 545795 569795 429616 650086 TRUE FALSE FALSE 489793.1386 476868.9254 561026.4164 575691.7443 493008.6083 439353.0137 409231.3182 440065.117 466855.4608 487300.2343 1.005115746 0.978593672 1.151295191 1.181390247 1.011714285 0.901606408 0.839792985 0.903067731 0.958044811 1 18.89445139 -6.09279388 4.107957938 0.910423696 1.079069669 0.539213693 0.068703272 0.186275046 5.604358418 0.025145944 0.025585202 8.08E-07 6.09279388 0.168645973 S(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_HeLa_A485_30min_R1 2 SPLDPDSGLLSCTLPNGFGGQSGPEGER 28 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 S(0.982)PLDPDS(0.018)GLLSCTLPNGFGGQSGPEGER;S(0.999)PLDPDS(0.001)GLLSCTLPNGFGGQSGPEGER ; 168.11 4.23E-14 123173000 49261 47723 49453 50599 60934 45781 45024 46901 44785 55604 TRUE FALSE FALSE 60218.9395 53303.78972 67747.72261 53363.09525 54867.19701 48178.02237 35404.25459 35398.45621 53772.93871 41742.94612 1.442613546 1.276953226 1.622974153 1.278373958 1.314406435 1.154159609 0.848149397 0.848010491 1.288192227 1 15.34924481 -6.28226756 1.9519016 0.985042208 1.407845345 0.61227336 0.14734584 0.224139656 1.679007733 0.06006626 0.054281283 5.22E-07 6.28226756 0.422803137 S(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_HeLa_A486_30min_R1 2 SPLDPDSGLLSCTLPNGFGGQSGPEGER 28 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 S(0.999)PLDPDS(0.001)GLLSCTLPNGFGGQSGPEGER;S(0.999)PLDPDS(0.001)GLLSCTLPNGFGGQSGPEGER ; 179.2 2.55E-20 95837000 68326 90088 66363 26150.5 78426 71271 75480 73193 77574 79982 TRUE FALSE FALSE 63536.70024 82949.09879 92060.53086 60879.68557 68589.07979 62478.30865 56594.10565 56528.55169 84298.17678 59953.9866 1.059757721 1.383546007 1.535519756 1.015440157 1.144028674 1.042104323 0.943959007 0.942865602 1.406047897 1 15.87156807 -5.284343834 24.94324162 1.064845593 1.332001673 0.330335148 0.16659469 826.6286987 900207.1718 0.046903011 0.069622507 5.20E-06 5.284343834 0.26715608 S(ph)PLDPMTSPGSGLILQANFVHSQR ddPTM_HeLa_A486_30min_R1 1 SPLDPMTSPGSGLILQANFVHSQR 24 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(0.984)PLDPMT(0.013)S(0.003)PGS(0.001)GLILQANFVHSQR 87.959 0.0022709 104990000 62611 62089 35551 18847 54031 49437 55237 53432 49273 60375 TRUE FALSE FALSE 58222.29222 57168.84152 49317.29929 43876.76847 47253.92816 43337.96558 41416.11836 41266.70001 53544.02331 45256.70702 1.286489806 1.263212577 1.089723547 0.96950864 1.044130943 0.957603158 0.915137691 0.911836117 1.183117969 1 15.46584399 -4.870576939 2.44126086 0.99040649 1.289346872 0.690298981 0.07341996 0.156350948 1.848352974 0.020456898 0.057925302 1.35E-05 4.870576939 0.298940382 S(ph)PLDQR ddPTM_HeLa_A485_30min_R1 1 SPLDQR 6 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(1)PLDQR 77.282 0.023451 604170000 780690 746900 740890 781990 800140 643710 759370 624820 690680 936990 TRUE FALSE FALSE 954351.7972 834243.4578 1014976.042 824708.1336 720475.2521 677413.6602 597124.396 471581.9153 829293.1407 703415.637 1.356739525 1.185989355 1.442925048 1.172433609 1.024252539 0.96303469 0.848892695 0.670417162 1.178951813 1 19.42401788 -5.775597412 1.86583169 0.906711449 1.316731403 0.619178021 0.135487896 0.212666593 1.52761205 0.046538711 0.060472759 1.68E-06 5.775597412 0.410019954 S(ph)PLEATRK ddPTM_HeLa_A485_30min_R1 3 SPLEATRK 8 1 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 S(1)PLEATRK;S(1)PLEATRK;S(1)PLEATRK ;; 84.687 0.0032839 831860000 678720 786680 534340 691010 658730 779520 906060 888880 577710 847410 TRUE FALSE FALSE 829698.9224 878675.3828 732014.6017 728758.1266 593144.5283 820334.4618 712472.8792 670880.7863 693651.0979 636166.2824 1.304217066 1.381203951 1.150665513 1.145546607 0.932373413 1.28949692 1.119947565 1.054568286 1.090361305 1 19.27904438 -4.869742808 3.994526045 1.098593026 1.342979245 0.543356044 0.090673627 0.161051714 4.681387822 0.023937203 0.055282161 1.35E-05 4.869742808 0.244386219 S(ph)PLEATRK ddPTM_HeLa_A486_30min_R1 4 SPLEATRK 8 1 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 S(1)PLEATRK;S(1)PLEATRK;S(1)PLEATRK;S(1)PLEATRK ;;; 90.827 0.0022404 919170000 1164250 1221350 554509 356718 834550 1008900 1155950 1086540 851940 1530080 TRUE FALSE FALSE 1082642.087 1124565.778 769229.7351 830457.5315 729872.9571 884432.1757 866719.0836 839158.561 925786.8451 1146938.009 0.943941241 0.980493949 0.670681178 0.72406488 0.636366527 0.771124654 0.755680845 0.731651192 0.807181241 1 20.12935599 -4.751885303 24.99890558 0.746754986 0.96221771 0.414539304 0.093723961 162.8859956 426193.8441 0.022402457 0.057627903 1.77E-05 4.751885303 0.215462724 S(ph)PLELEPEAK ddPTM_HeLa_A485_30min_R1 2 SPLELEPEAK 10 0 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 S(1)PLELEPEAK;S(1)PLELEPEAK ; 212.09 2.11E-14 1344950000 1234230 840150 758760 2205740 1214360 955470 1501650 1150800 1056540 2796460 TRUE FALSE FALSE 1508780.205 938398.2342 1039456.899 2326233.991 1093454.055 1005496.932 1180810.21 868564.4956 1268577.887 2099353.987 0.718687851 0.446993809 0.495131791 1.108071343 0.520852634 0.478955402 0.562463604 0.413729414 0.604270597 1 21.00151402 -10.33502826 3.746275032 1.001321024 0.59040198 0.289269792 0.190663233 84529046.59 126431212.1 1206395.056 0.048930049 4.62E-11 10.33502826 -0.410919044 S(ph)PLELEPEAK ddPTM_HeLa_A486_30min_R1 3 SPLELEPEAK 10 0 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 S(1)PLELEPEAK;S(1)PLELEPEAK;S(1)PLELEPEAK ;; 221.32 5.58E-17 2408530000 2469920 4113400 1769300 1452710 2853350 4197300 4619000 3924000 3227100 4459400 TRUE FALSE FALSE 2296791.363 3787439.203 2454420.343 3381982.296 2495456.237 3679479.801 3463277.345 3030590.86 3506827.626 3342737.214 0.68709899 1.133035282 0.73425465 1.011740403 0.746530785 1.100738576 1.036060307 0.906619535 1.049088637 1 21.67259851 -6.273656485 24.75986708 1.013762557 0.878722809 0.249754367 0.133571325 1091.583648 2212257.259 0.043690455 0.038829138 5.33E-07 6.273656485 -0.135039748 S(ph)PLELGEK ddPTM_HeLa_A486_30min_R1 1 SPLELGEK 8 0 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 0 S(1)PLELGEK 82.417 0.0073288 48589000 69970 78844 40584 26840 61892 77643 77006 81520 58913 102250 TRUE FALSE FALSE 65065.46433 72596.1143 56299.21168 62484.87642 54128.92824 68064.19608 57738.28431 62959.67557 64019.62627 76645.93446 0.848909532 0.94716197 0.734536177 0.815240585 0.706220475 0.888034004 0.753311767 0.821435292 0.835264476 1 16.22592165 -8.368323897 2.242091694 0.999977859 0.813111365 0.399209573 0.067898643 2.636507164 14.74575768 0.065110242 0.017783922 4.28E-09 8.368323897 -0.186866494 S(ph)PLFIFMR ddPTM_HeLa_A485_30min_R1 2 SPLFIFMR 8 0 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 0 S(1)PLFIFMR;S(1)PLFIFMR ; 105.94 0.0014115 99650000 20072.3 20413.9 19384.4 20596 17579.6 19962.8 19043.8 21852 15964.1 21472 TRUE FALSE FALSE 24537.31389 22801.12803 26555.49621 21721.10733 15829.3133 21008.02134 14974.93656 16492.76274 19167.94844 16119.42556 1.522220118 1.414512443 1.647421995 1.347511252 0.98200232 1.303273572 0.928999393 1.0231607 1.189121062 1 13.97651271 -5.578332972 4.418889328 1.078323113 1.51582509 0.76364044 0.11525113 0.09722195 3.950246292 0.033667278 0.044865286 2.64E-06 5.578332972 0.437501977 S(ph)PLFIFMR ddPTM_HeLa_A486_30min_R1 2 SPLFIFMR 8 0 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 0 S(1)PLFIFMR;S(1)PLFIFMR ; 104.01 0.0015491 82600000 22381 19805.6 14702.9 12041.3 18799 18470.7 19349.9 19409.6 20892 25001 TRUE FALSE FALSE 20812.20748 18236.13213 20396.25664 28032.75493 16441.05413 16191.97283 14508.35036 14990.45779 22702.93538 18740.58687 1.110541928 0.973082233 1.088346741 1.495831221 0.877296652 0.864005644 0.774167344 0.799892655 1.2114314 1 14.19387851 S(ph)PLGEAPPGTPPCR ddPTM_HeLa_A485_30min_R1 2 SPLGEAPPGTPPCR 14 0 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 0 S(1)PLGEAPPGTPPCR;S(1)PLGEAPPGTPPCR ; 188.13 1.38E-17 301870000 122975 139262 160773 161547 222810 150254 201244 172709 155797 217894 TRUE FALSE FALSE 150330.3645 155547.4795 220249.623 170371.9036 200626.2541 158121.0671 158246.5754 130351.847 187064.0288 163577.0358 0.919018759 0.950912692 1.346458089 1.041539252 1.226494007 0.966645876 0.967413149 0.796883537 1.143583681 1 17.3196107 -6.405467528 11.73921724 0.961045189 1.099543172 0.15537781 0.14034102 1.006570747 95.24088881 0.049809038 0.043916027 3.93E-07 6.405467528 0.138497982 S(ph)PLGEAPPGTPPCR ddPTM_HeLa_A486_30min_R1 2 SPLGEAPPGTPPCR 14 0 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 0 S(1)PLGEAPPGTPPCR;S(1)PLGEAPPGTPPCR ; 182.02 2.85E-11 0 173794 210119 176360 67124 214563 211112 236699 233357 169766 214521 TRUE FALSE FALSE 161611.9381 193468.4052 244651.3151 156268.0643 187650.5078 185067.1479 177474.4067 180226.7052 184481.4536 160803.5453 1.005027207 1.203135197 1.521429858 0.971794894 1.166955041 1.150889724 1.103672225 1.120788133 1.147247427 1 17.29493969 S(ph)PLGFYVHLK ddPTM_HeLa_A485_30min_R1 2 SPLGFYVHLK 10 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(1)PLGFYVHLK;S(1)PLGFYVHLK ; 160.72 4.36E-07 649890000 1089480 980240 878740 1339510 1283210 956290 1159220 968240 972970 1713540 TRUE FALSE FALSE 1331831.067 1094870.541 1203822.493 1412684.039 1155449.107 1006359.866 911543.177 730777.6219 1168236.154 1286386.013 1.035327696 0.851121304 0.935817461 1.098180503 0.898213363 0.782315615 0.708607811 0.568085796 0.908153651 1 20.29489219 -6.173669857 3.431814829 0.759635443 0.969993789 0.312060854 0.125072514 0.266410583 5.997051299 0.042939551 0.042432072 6.70E-07 6.173669857 0.210358346 S(ph)PLGFYVHLK ddPTM_HeLa_A486_30min_R1 2 SPLGFYVHLK 10 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(1)PLGFYVHLK;S(1)PLGFYVHLK ; 178.65 1.29E-09 758000000 1786800 2380800 1396790 743360 1957230 2149720 2203830 1979500 1757970 2217140 TRUE FALSE FALSE 1661554.547 2192136.737 1937664.495 1730579.647 1711735.963 1884509.403 1652408.424 1528811.062 1910352.255 1661953.713 0.999759821 1.319011908 1.165895584 1.041292326 1.029954053 1.133912087 0.994256586 0.919887871 1.149461769 1 20.66444877 -5.251729969 5.527167781 1.036471351 1.178542708 0.255162176 0.095266675 0.203937057 22.98632747 0.025670571 0.04250758 5.60E-06 5.251729969 0.142071358 S(ph)PLGGGGGSGASSQAACLK ddPTM_HeLa_A485_30min_R1 2 SPLGGGGGSGASSQAACLK 19 0 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 S(1)PLGGGGGSGASSQAACLK;S(1)PLGGGGGSGASSQAACLK ; 288.69 8.61E-73 112600000 60227 80250 68589 83102 102166 78754 107979 102046 73207 112267 TRUE FALSE FALSE 73624.28837 89634.53942 93962.92533 87641.65183 91993.99431 82877.43766 84908.40454 77019.0585 87898.97341 84280.90302 0.873558371 1.063521346 1.114878009 1.039875567 1.091516477 0.983347766 1.007445358 0.913837604 1.042928709 1 16.36291815 -6.303189315 23.88335614 0.985247542 1.042684689 0.103541003 0.067662894 602.6675884 344757.7484 0.023889956 0.021069294 4.98E-07 6.303189315 0.057437147 S(ph)PLGGGGGSGASSQAACLK ddPTM_HeLa_A486_30min_R1 2 SPLGGGGGSGASSQAACLK 19 0 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 S(1)PLGGGGGSGASSQAACLK;S(1)PLGGGGGSGASSQAACLK ; 280.32 2.01E-72 124960000 90898 106652 75816 42324 106127 105584 112331 106289 88065 131572 TRUE FALSE FALSE 84526.5196 98200.5071 105173.9856 98532.41094 92815.56207 92558.11958 84224.59568 82089.31497 95698.54511 98625.51481 0.857045155 0.995690692 1.06639733 0.999055986 0.941090774 0.938480471 0.853983838 0.83233345 0.970322389 1 16.58967331 -6.156414334 2.248439246 0.902172718 0.985391583 0.127034744 0.067804483 0.48773025 4.840589077 0.026079284 0.025773632 6.98E-07 6.156414334 0.083218865 S(ph)PLHIKDDVLPK ddPTM_HeLa_A485_30min_R1 3 SPLHIKDDVLPK 12 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 S(1)PLHIKDDVLPK;S(1)PLHIKDDVLPK;S(1)PLHIKDDVLPK ;; 145.55 1.13E-07 1254670000 1157810 916310 548110 1617940 1059220 968790 1388830 1388580 850410 2086290 TRUE FALSE FALSE 1415360.84 1023464.484 750878.6978 1706323.965 953760.3377 1019514.346 1092095.125 1048028.578 1021079.487 1566216.298 0.903681593 0.653463053 0.479422094 1.089456142 0.608958251 0.650940964 0.697282442 0.66914677 0.651940276 1 20.57885204 -9.477458548 10.01099836 1 0.707692484 0.225350935 0.160273222 0 0 0.150655904 0.036539424 3.33E-10 9.477458548 -0.292307516 S(ph)PLHIKDDVLPK ddPTM_HeLa_A486_30min_R1 4 SPLHIKDDVLPK 12 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 S(1)PLHIKDDVLPK;S(1)PLHIKDDVLPK;S(1)PLHIKDDVLPK;S(1)PLHIKDDVLPK ;;; 156.5 2.72E-08 1963350000 1940700 1679150 767080 686270 1206070 1771020 1953080 1837390 1296890 2355390 TRUE FALSE FALSE 1804666.952 1546088.039 1064113.919 1597671.242 1054793.454 1552529.559 1464398.726 1419056.407 1409305.469 1765585.013 1.022135405 0.875680314 0.602697639 0.904896241 0.597418672 0.879328691 0.829412753 0.803731566 0.798208786 1 20.75171486 -9.4312947 9.70875089 1.000010497 0.806873414 0.170710356 0.123321677 0 0 0.116446134 0.028242336 3.70E-10 9.4312947 -0.193137083 S(ph)PLHPMSEIPR ddPTM_HeLa_A486_30min_R1 3 SPLHPMSEIPR 11 0 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(1)PLHPMSEIPR;S(1)PLHPMSEIPR;S(1)PLHPMSEIPR ;; 105 0.00055059 225231000 118778 209591 138136 32832 170391 176102 153298 153014 167257 143650 TRUE FALSE FALSE 110452.2756 192982.2458 191625.9586 76434.55524 149018.9719 154376.3257 114941.219 118176.0525 181754.9714 107679.105 1.025754027 1.792197714 1.779602074 0.709836465 1.38391726 1.433670216 1.067442184 1.097483606 1.687931669 1 16.7163788 -5.221333975 24.97625926 1.213472687 1.558485843 0.184889156 0.31999458 859.3791124 535190.4981 0.085028608 0.147271348 6.01E-06 5.221333975 0.345013156 S(ph)PLHVGETR ddPTM_HeLa_A485_30min_R1 4 SPLHVGETR 9 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 S(1)PLHVGETR;S(1)PLHVGETR;S(1)PLHVGETR;S(1)PLHVGETR ;;; 119.39 0.00035934 520460000 226424 273075 257075 266846 267752 253998 250869 253747 250006 311367 TRUE FALSE FALSE 276791.2376 305008.7458 352177.7403 281423.1213 241093.6707 267296.9425 197268.7887 191515.1504 300179.911 233748.9372 1.184139021 1.304856182 1.50664959 1.203954656 1.031421463 1.143521531 0.843934484 0.819319877 1.284197972 1 17.83460028 -5.651023269 3.130401934 1.005734622 1.333007935 0.480701265 0.145866219 0.211907154 4.135780765 0.046295362 0.061424027 2.23E-06 5.651023269 0.327273313 S(ph)PLHVGETR ddPTM_HeLa_A486_30min_R1 3 SPLHVGETR 9 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 S(1)PLHVGETR;S(1)PLHVGETR;S(1)PLHVGETR ;; 115.33 0.00050142 801960000 322160 397681 275838 84238 294629 309354 304809 273362 292793 358092 TRUE FALSE FALSE 299578.2476 366167.3092 382649.8608 196110.3212 257673.8835 271189.0488 228542.5643 211123.4401 318172.533 268423.4324 1.11606593 1.364140626 1.425545666 0.730600601 0.959953016 1.010303185 0.851425534 0.786531333 1.185338143 1 18.03415109 -5.254446431 24.97872397 0.92419452 1.30813974 0.591358002 0.140774141 357.3169543 1276328.394 0.037732876 0.063580007 5.57E-06 5.254446431 0.383945221 S(ph)PLKALSEFFK ddPTM_HeLa_A485_30min_R1 2 SPLKALSEFFK 11 1 O75369-8 O75369-8 FLNB Filamin-B 1 0 S(1)PLKALSEFFK;S(1)PLKALSEFFK ; 180.74 9.63E-11 196279000 218297 345720 131952 148912 306470 431490 589530 938190 160260 211310 TRUE FALSE FALSE 266856.4145 386148.9466 180766.5358 157046.6855 275956.7707 454082.1492 463572.0995 708097.4315 192422.712 158634.3059 1.682211254 2.434208316 1.139517299 0.989991948 1.73957814 2.862446094 2.922268906 4.463709332 1.212995581 1 17.27534527 -6.208968749 5.32361431 2.736224838 1.573135444 0.150833569 0.983098739 0.309660315 19.95467047 0.3235403 0.319723668 6.18E-07 6.208968749 -1.163089394 S(ph)PLKALSEFFK ddPTM_HeLa_A486_30min_R1 2 SPLKALSEFFK 11 1 O75369-8 O75369-8 FLNB Filamin-B 1 0 S(1)PLKALSEFFK;S(1)PLKALSEFFK ; 157.68 1.02E-07 172040000 243610 135466 75235 110035 186954 140536 253360 258160 94961 320080 TRUE FALSE FALSE 226534.197 124731.1808 104368.0069 256167.0409 163504.486 123198.0972 189966.6482 199382.6036 103192.2959 239929.8846 0.944168324 0.519865131 0.434993778 1.067674589 0.681467781 0.513475415 0.791759011 0.831003624 0.43009355 1 17.87225334 -10.0915924 4.437930097 1.000025707 0.690698322 0.166931359 0.207420778 137509796.6 1.017984342 40425.81694 0.049245844 8.10E-11 10.0915924 -0.309327385 S(ph)PLLAGGS(ph)PPQPVVPAHK ddPTM_HeLa_A485_30min_R1 1 SPLLAGGSPPQPVVPAHK 18 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 S(1)PLLAGGS(1)PPQPVVPAHK 151.06 2.83E-08 369770000 500540 358990 330200 566650 520520 434180 495510 393220 442640 758790 TRUE FALSE FALSE 611883.3962 400970.7577 452354.7208 597604.6547 468695.2011 456912.9934 389640.2406 296782.1785 531473.7879 569637.6175 1.074162551 0.703904983 0.794109635 1.049096191 0.822795382 0.802111692 0.684014237 0.52100172 0.933003319 1 19.1196849 -6.262553507 2.888942168 0.747046771 0.885717267 0.072941518 0.161466864 0.573793047 9.661251861 0.059076622 0.054825788 5.46E-07 6.262553507 0.138670496 S(ph)PLLAGGS(ph)PPQPVVPAHK ddPTM_HeLa_A486_30min_R1 2 SPLLAGGSPPQPVVPAHK 18 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 S(1)PLLAGGS(1)PPQPVVPAHK;S(1)PLLAGGS(1)PPQPVVPAHK ; 163.71 4.61E-12 1244920000 686060 817060 491920 247490 662870 835440 781060 798960 674060 915880 TRUE FALSE FALSE 637970.7368 752313.1899 682404.5981 576169.2275 579726.6636 732371.9069 585630.5268 617054.2492 732488.0635 686537.6866 0.929258145 1.095807564 0.993979808 0.839239038 0.844420743 1.066761405 0.853020218 0.898791517 1.066930597 1 19.38897939 -5.015141335 24.71326057 0.930911661 1.020623066 0.106493167 0.088720397 1043.02336 1702401.477 0.023530292 0.042655214 9.66E-06 5.015141335 0.089711405 S(ph)PLLEVK ddPTM_HeLa_A485_30min_R1 2 SPLLEVK 7 0 A0A140T9E6;A2AB20;Q9BW19 A0A140T9E6 KIFC1 Kinesin-like protein KIFC1 1 0 S(1)PLLEVK;S(1)PLLEVK ; 110.87 0.0029387 95731000 174431 136397 116291 223670 158174 136773 173356 139000 136675 268880 TRUE FALSE FALSE 213232.5742 152347.4427 159311.8802 235888.5257 142425.6412 143934.2228 136317.0744 104910.0321 164104.4188 201853.1644 1.056374691 0.754743891 0.789246384 1.168614455 0.705590332 0.71306399 0.675327904 0.519734394 0.812989082 1 17.62294668 -5.893692953 21.29864396 0.709303199 0.920354457 0.26673541 0.160354133 4.672526741 917.808299 0.048603674 0.055111472 1.28E-06 5.893692953 0.211051258 S(ph)PLLEVK ddPTM_HeLa_A486_30min_R1 2 SPLLEVK 7 0 A0A140T9E6;A2AB20;Q9BW19 A0A140T9E6 KIFC1 Kinesin-like protein KIFC1 1 0 S(1)PLLEVK;S(1)PLLEVK ; 103.55 0.0037483 208160000 417280 436350 230362 134825 312460 416940 421480 404260 331900 489730 TRUE FALSE FALSE 388030.8268 401772.0368 319564.3357 313879.4137 273268.3532 365502.1819 316021.246 312218.8229 360669.3592 367098.4204 1.057021238 1.094453189 0.870514058 0.85502796 0.744400787 0.995651743 0.860862451 0.850504403 0.982486819 1 18.48580738 -4.762179489 24.9999839 0.88517113 1.075737266 0.469265526 0.076351157 14.4371406 487749.5599 0.019352265 0.044498079 1.73E-05 4.762179489 0.190566136 S(ph)PLLNQPVPELSHASLIANQSPFR ddPTM_HeLa_A485_30min_R1 1 SPLLNQPVPELSHASLIANQSPFR 24 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 S(1)PLLNQPVPELSHASLIANQSPFR 92.49 0.0017254 195830000 9715.6 23489 19357 9835.1 24903 27578 21317 34162 15251 13453 TRUE FALSE FALSE 11876.8017 26235.83422 26517.95981 10372.36661 22423.56988 29021.94144 16762.44881 25783.71594 18311.73581 10099.41468 1.175989112 2.597757894 2.62569274 1.027026509 2.220284104 2.873626081 1.659744582 2.552991113 1.813148225 1 13.30198406 S(ph)PLLNQPVPELSHASLIANQSPFR ddPTM_HeLa_A486_30min_R1 2 SPLLNQPVPELSHASLIANQSPFR 24 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 S(1)PLLNQPVPELSHASLIANQSPFR;S(1)PLLNQPVPELSHASLIANQSPFR ; 220.78 3.49E-38 386350000 65124 100603 134849 15767.1 167169 60905 69861 82352 89979 35587 TRUE FALSE FALSE 60559.1439 92630.85189 187066.1442 36706.60563 146201.1052 53391.16034 52381.03889 63602.24733 97778.45217 26675.78357 2.270191755 3.472469765 7.012582918 1.37602727 5.480667695 2.001484238 1.963617629 2.384269132 3.665438802 1 14.70324303 -6.297302557 24.97067586 2.274519455 3.927605971 0.226615259 1.585437483 952.9099711 663485.6009 0.543595589 0.479422498 5.04E-07 6.297302557 1.653086516 S(ph)PLPAGPSSCTSPR ddPTM_HeLa_A485_30min_R1 3 SPLPAGPSSCTSPR 14 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PLPAGPSSCTSPR;S(1)PLPAGPSSCTSPR;S(1)PLPAGPSSCTSPR ;; 183.7 2.07E-17 1302550000 69957 66904 74641 76727.9 91541 81911 95078 106167 84706 91534 TRUE FALSE FALSE 85518.6933 74727.84081 102253.812 80919.35089 82426.85662 86199.7333 74763.80858 80129.37679 101705.7172 68716.25836 1.244519061 1.087484135 1.488058495 1.177586685 1.199524808 1.254429961 1.08800756 1.16609051 1.480082293 1 16.06836386 S(ph)PLPAGPSSCTSPR ddPTM_HeLa_A486_30min_R1 4 SPLPAGPSSCTSPR 14 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PLPAGPSSCTSPR;S(1)PLPAGPSSCTSPR;S(1)PLPAGPSSCTSPR;S(1)PLPAGPSSCTSPR ;;; 171.26 3.38E-12 1655330000 168039 192186 162577 81501 191394 198040 232615 221693 142478 237175 TRUE FALSE FALSE 156260.3339 176956.4814 225531.1684 189738.4468 167387.5798 173607.8383 174412.2666 171218.3434 154828.1078 177784.8362 0.878929481 0.995340689 1.268562455 1.06723639 0.941517755 0.976505319 0.981030049 0.963064944 0.870873529 1 17.43977275 -5.757776916 24.46348295 0.955978748 1.063865041 0.194702525 0.095550072 119.0384562 795109.3707 0.030412196 0.037720823 1.75E-06 5.757776916 0.107886293 S(ph)PLPAPPRPFLYR ddPTM_HeLa_A485_30min_R1 2 SPLPAPPRPFLYR 13 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PLPAPPRPFLYR;S(1)PLPAPPRPFLYR ; 86.772 0.00091571 5216700000 369190 430860 361290 351860 421740 397600 389950 370640 390540 537040 TRUE FALSE FALSE 451315.0418 481245.329 494946.2055 371081.2208 379750.0848 418417.7212 306633.9969 279739.9589 468917.7958 403165.8115 1.119427861 1.193666019 1.227649249 0.920418374 0.941920356 1.037830365 0.760565475 0.693858335 1.163089187 1 18.62101378 -5.268428348 23.85691707 0.91613418 1.181589545 0.44099005 0.127770531 251.0177386 856852.8922 0.036376128 0.055388261 5.39E-06 5.268428348 0.265455366 S(ph)PLPAPPRPFLYR ddPTM_HeLa_A486_30min_R1 4 SPLPAPPRPFLYR 13 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PLPAPPRPFLYR;S(1)PLPAPPRPFLYR;S(1)PLPAPPRPFLYR;S(1)PLPAPPRPFLYR ;;; 122.93 1.70E-05 4399300000 755175 1029872 713297 302548.1 774309 795855.2 836369 859662 701195 850974 TRUE FALSE FALSE 702241.1322 948261.192 989504.7012 704347.2667 677187.9451 697670.6771 627100.63 663935.7289 761975.1472 637884.5715 1.100890606 1.486571763 1.551228459 1.104192354 1.061615181 1.093725587 0.983094212 1.040839924 1.194534531 1 19.28293586 -5.375883215 6.356955852 1.06416989 1.38886727 0.579136165 0.121826544 0.161754756 7.927626478 0.034517044 0.051445919 4.21E-06 5.375883215 0.32469738 S(ph)PLPGPSEEK ddPTM_HeLa_A486_30min_R1 2 SPLPGPSEEK 10 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 S(1)PLPGPSEEK;S(1)PLPGPSEEK ; 134.13 0.00011311 0 635670 658900 297100 224620 441510 678140 717820 652870 485830 800380 TRUE FALSE FALSE 591112.8156 606686.3643 412145.0766 522926.7117 386131.6989 594477.9816 538213.8437 504225.7531 527942.1356 599959.6384 0.985254303 1.011211964 0.686954672 0.871603152 0.643596126 0.990863291 0.897083419 0.84043279 0.879962754 1 19.19450592 -10.23194869 12.81618701 1.000000966 0.863606557 0.104507392 0.115922163 0 0 0.11329832 0.027478879 5.86E-11 10.23194869 -0.136394409 S(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_A485_30min_R1 2 SPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 34 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.976)PLPPEEEAKDEEEDQT(0.006)LVNLDT(0.006)Y(0.003)T(0.006)S(0.003)DLHFQVSK;S(0.941)PLPPEEEAKDEEEDQT(0.04)LVNLDT(0.007)Y(0.008)T(0.002)S(0.002)DLHFQVSK ; 48.831 0.016482 396258000 26197 15010.1 17659.7 40256 25826.1 23713.8 31782 23295 21497.4 49083 TRUE FALSE FALSE 32024.43227 16765.40062 24192.75791 42455.08335 23254.7628 24955.4179 24991.51606 17581.86472 25811.73099 36847.51141 0.869107059 0.454994109 0.656564229 1.152183193 0.631108097 0.677261963 0.678241626 0.477152026 0.700501337 1 15.16927957 S(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_A486_30min_R1 3 SPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 34 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(1)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(1)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(1)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ;; 328.31 3.59E-128 1048180000 78420 130370 57447 50317 107507 159265 185260 148278 123220 154857 TRUE FALSE FALSE 72923.16296 120039.0064 79692.01688 117140.5189 94022.4696 139616.5036 138905.9885 114518.3363 133900.8088 116079.7993 0.628215791 1.034107633 0.686527866 1.009137849 0.809981325 1.202763138 1.196642219 0.986548366 1.15352378 1 16.8247574 -6.254303548 24.94860641 1.112601445 0.846315809 0.507525872 0.134770875 452.120028 1580722.421 0.042296871 0.041449365 5.57E-07 6.254303548 -0.266285636 S(ph)PLPTKR ddPTM_HeLa_A485_30min_R1 4 SPLPTKR 7 1 D6R9T3;E7EMP6;Q96FZ2 D6R9T3 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 1 0 S(1)PLPTKR;S(1)PLPTKR;S(1)PLPTKR;S(1)PLPTKR ;;; 68.735 0.013034 2049470000 2016120 2533080 1854520 2102390 2912420 2674650 3023110 3128580 2109640 2685670 TRUE FALSE FALSE 2464598.938 2829301.671 2540584.121 2217238.242 2622449.239 2814690.538 2377197.852 2361290.85 2533025.397 2016181.895 1.222409022 1.403296834 1.260096684 1.099721333 1.300700718 1.396049903 1.17905922 1.171169553 1.256347656 1 20.94319437 -13.61995821 0.201321993 1.58E-10 1.297837129 0.435064385 0.08898921 118.7236374 1.351464025 47.70331139 0.223155779 2.40E-14 13.61995821 1.297837128 S(ph)PLPTKR ddPTM_HeLa_A486_30min_R1 4 SPLPTKR 7 1 D6R9T3;E7EMP6;Q96FZ2 D6R9T3 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 1 0 S(1)PLPTKR;S(1)PLPTKR;S(1)PLPTKR;S(1)PLPTKR ;;; 75.378 0.0097511 2124310000 2557720 2864430 1997560 978140 2851900 2500530 2936930 2778270 2089820 2882160 TRUE FALSE FALSE 2378437.036 2637442.135 2771068.729 2277159.352 2494188.109 2192040.032 2202079.05 2145718.57 2270967.28 2160448.376 1.100899731 1.220784613 1.282635937 1.054021645 1.154477069 1.014622731 1.01926946 0.993182061 1.05115554 1 21.04289933 -5.93517728 1.246589865 1.011863496 1.193947518 0.60559222 0.059394421 0.296230871 0.965822643 0.025494569 0.030904923 1.16E-06 5.93517728 0.182084022 S(ph)PLQDLR ddPTM_HeLa_A485_30min_R1 2 SPLQDLR 7 0 Q8NG31-4;Q8NG31-2;Q8NG31;E9PPJ1;Q8NG31-3;H0YN41 Q8NG31-4 CASC5 Protein CASC5 1 0 S(1)PLQDLR;S(1)PLQDLR ; 107.79 0.0032314 252740000 440040 467020 418870 500100 463970 378270 445100 346530 431420 566430 TRUE FALSE FALSE 537925.3799 521633.9265 573827.4436 527419.1967 417775.5177 398075.6323 350000.7489 261542.9742 518002.0368 425229.4254 1.265023885 1.226711736 1.349453752 1.240316792 0.982470856 0.936143194 0.823086851 0.615063207 1.218170724 1 18.69788191 -5.830531224 2.622072992 0.890854819 1.281014018 0.571692761 0.144850246 0.188678387 2.645109121 0.047331236 0.057175733 1.48E-06 5.830531224 0.390159199 S(ph)PLQDLR ddPTM_HeLa_A486_30min_R1 2 SPLQDLR 7 0 Q8NG31-4;Q8NG31-2;Q8NG31;E9PPJ1;Q8NG31-3;H0YN41 Q8NG31-4 CASC5 Protein CASC5 1 0 S(1)PLQDLR;S(1)PLQDLR ; 126.31 0.0017413 298780000 716790 860660 567860 194187 617820 679290 661740 631640 670680 765320 TRUE FALSE FALSE 666546.7225 792458.1671 787750.5998 452077.1497 540327.2547 595486.1063 496165.6528 487829.3606 728815.0824 573678.8906 1.161881208 1.381361908 1.373155981 0.788031697 0.941863582 1.03801293 0.864883929 0.850352643 1.270423393 1 19.12988391 -5.250471349 24.8516278 0.956492399 1.313055947 0.56587331 0.136555305 465.7037078 1055200.658 0.036526423 0.062477211 5.62E-06 5.250471349 0.356563548 S(ph)PLQSVVVR ddPTM_HeLa_A485_30min_R1 2 SPLQSVVVR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(1)PLQSVVVR;S(1)PLQSVVVR ; 134.75 0.00019484 292450000 83169 101052 106993 98693 90419 90638 95337 101232 65468 113377 TRUE FALSE FALSE 101669.6571 112869.1524 146574.1631 104084.3487 81416.56688 95383.66553 74967.47112 76404.69327 78606.82709 85114.20045 1.194508749 1.326090732 1.722088233 1.222878769 0.956556796 1.120655132 0.880786881 0.89767269 0.923545386 1 16.37711223 -5.604397852 3.983357427 0.962760433 1.415239223 0.681836723 0.139001457 0.129687465 3.969783624 0.043637775 0.057975749 2.49E-06 5.604397852 0.45247879 S(ph)PLQSVVVR ddPTM_HeLa_A486_30min_R1 3 SPLQSVVVR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(1)PLQSVVVR;S(1)PLQSVVVR;S(1)PLQSVVVR ;; 123.2 0.00031971 397480000 144275 134890 106096 48399 142413 129518 143260 114572 113975 133039 TRUE FALSE FALSE 134162.0675 124200.8251 147179.2125 112675.318 124550.2336 113539.386 107414.8328 88486.45669 123854.4448 99725.16846 1.345318034 1.245431089 1.475848222 1.129858387 1.248934803 1.13852288 1.077108562 0.887303156 1.241957739 1 16.60567003 -6.057959733 0.944833408 1.037732112 1.33806843 0.525314918 0.111224253 0.428987768 0.830494499 0.058347813 0.066108804 8.75E-07 6.057959733 0.300336318 S(ph)PLRNPLQAK ddPTM_HeLa_A485_30min_R1 1 SPLRNPLQAK 10 1 F5H212;P15822;C9JZF8;C9JAW2;C9J2N3 F5H212 HIVEP1 Zinc finger protein 40 1 0 S(1)PLRNPLQAK 54.471 0.019767 135680000 144430 156990 140560 166770 168090 150400 162740 156040 131200 208150 TRUE FALSE FALSE 176557.9552 175348.6149 192558.9932 175880.2228 151354.3694 158274.7114 127969.2695 117770.9453 157530.6366 156262.0357 1.12988388 1.122144698 1.232282635 1.125546727 0.968593355 1.012880132 0.818940243 0.753675996 1.00811842 1 17.25360779 -5.981102765 1.51710326 0.88673108 1.162841965 0.633695071 0.084129766 0.237059351 1.11793004 0.034079358 0.038590757 1.04E-06 5.981102765 0.276110885 S(ph)PLS(ph)PTETFSWPDVR ddPTM_HeLa_A485_30min_R1 2 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 2 0 S(1)PLS(0.97)PT(0.018)ET(0.011)FS(0.001)WPDVR;S(1)PLS(0.935)PT(0.01)ET(0.046)FS(0.009)WPDVR ; 79.771 0.0098253 54797000 31753 42019 32032 39174 48027 30515 45837 39047 37795 46531 TRUE FALSE FALSE 38816.3453 46932.75653 43881.96976 41313.97643 43245.26325 32112.71821 36043.5505 29470.66203 45380.10982 34931.67804 1.111207577 1.343558603 1.256222782 1.182708039 1.237995587 0.919300761 1.031829918 0.843665798 1.299110503 1 15.09224833 -6.247051169 24.20075197 1.009826044 1.232087091 0.416380609 0.122541329 478.0790071 804121.3377 0.038552038 0.038368972 5.66E-07 6.247051169 0.222261047 S(ph)PLSALAR ddPTM_HeLa_A485_30min_R1 6 SPLSALAR 8 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 S(1)PLSALAR;S(1)PLSALAR;S(1)PLSALAR;S(0.999)PLS(0.001)ALAR;S(1)PLSALAR;S(1)PLSALAR ;;;;; 143.21 0.00037438 2603705000 335274 388142 381701 328380 432003 345665 333923 372148 336255 442577 TRUE FALSE FALSE 409854.5446 433531.8305 522908.0838 346318.5679 388991.2645 363763.4849 262577.6231 280878.1195 403738.2942 332250.6989 1.23357015 1.304833464 1.573835918 1.042341127 1.170776362 1.09484641 0.790299686 0.845380071 1.21516161 1 18.34191271 -5.781927283 1.339627506 0.966534867 1.3515243 0.48490678 0.155484335 0.357540237 1.344537458 0.062569886 0.086599031 1.65E-06 5.781927283 0.384989433 S(ph)PLSALAR ddPTM_HeLa_A486_30min_R1 4 SPLSALAR 8 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 S(1)PLSALAR;S(1)PLSALAR;S(1)PLSALAR;S(1)PLSALAR ;;; 139.98 0.00042804 1770630000 330582 319695 253188 96860 316068 284636 300211 289705 229256 256813 TRUE FALSE FALSE 307409.9089 294361.2039 351229.1742 225494.975 276423.8042 249520.5043 225095.0325 223745.4957 249128.0947 192505.3532 1.596890184 1.529106588 1.824516401 1.171369893 1.435927882 1.296174367 1.169292327 1.162281942 1.294135932 1 17.55453904 -5.605190653 0.381395561 1.067894318 1.790269529 0.626478704 0.143832998 1.502454545 0.353257993 0.144232405 0.454900337 2.48E-06 5.605190653 0.72237521 S(ph)PLSGIPVR ddPTM_HeLa_A485_30min_R1 6 SPLSGIPVR 9 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(1)PLSGIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR ;;;;; 133.44 0.00020902 2390575000 596870 773287 682779 539631 811509 718242 817352 856733 669447 782928 TRUE FALSE FALSE 729641.6723 863716.1879 935367.3649 569109.6751 730712.3146 755848.0405 642718.068 646617.8884 803798.8724 587758.4583 1.241397145 1.469508734 1.591414554 0.968271349 1.243218714 1.285984114 1.093507135 1.100142209 1.367566661 1 19.16486387 -5.256299465 24.99938144 1.162455114 1.437646998 0.455497602 0.141337303 396.4478677 1928226.662 0.03815951 0.063582369 5.54E-06 5.256299465 0.275191885 S(ph)PLSGIPVR ddPTM_HeLa_A486_30min_R1 6 SPLSGIPVR 9 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(0.994)PLS(0.006)GIPVR;S(0.999)PLS(0.001)GIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR;S(1)PLSGIPVR ;;;;; 132.08 0.00022368 1682523000 544929 609385 570062 183875.9 777059 583738 625455 598067 537140 600786 TRUE FALSE FALSE 506732.2911 561095.1133 790805.2732 428072.3878 679593.0144 511722.3406 468959.5436 461900.1998 583699.7277 450345.2751 1.12520841 1.245922061 1.755997713 0.950542642 1.509048839 1.136288907 1.041333327 1.025657924 1.296116025 1 18.780672 -6.495168221 22.23157839 1.092328659 1.317898093 0.205719364 0.215134646 291.892025 234179.287 0.073783912 0.064831304 3.20E-07 6.495168221 0.225569434 S(ph)PLSPTETFSWPDVR ddPTM_HeLa_A485_30min_R1 4 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR ;;; 286.09 7.74E-59 679860000 101205 122325 115854 112048 156884 119404 146384 166920 107905 150489 TRUE FALSE FALSE 123717.7031 136629.8447 158713.2157 118168.8985 141264.0781 125655.8088 115107.8626 125982.6083 129560.5437 112974.8618 1.095090546 1.209382711 1.404854258 1.045975154 1.250402752 1.11224574 1.018880313 1.115138414 1.146808605 1 16.78564227 -6.426473327 5.281940889 1.077902284 1.203706366 0.288496994 0.097538163 0.314189911 13.52286095 0.035089787 0.030565567 3.75E-07 6.426473327 0.125804082 S(ph)PLSPTETFSWPDVR ddPTM_HeLa_A486_30min_R1 4 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.984)PLS(0.016)PTETFSWPDVR;S(0.99)PLS(0.01)PTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR ;;; 191.06 3.57E-18 681394000 163529 165565 130357 57949.6 199013 161357 188403 169882 131959 150634 TRUE FALSE FALSE 152066.4616 152445.0264 180834.7215 134909.5974 174050.9338 141450.4139 141262.5767 131203.5771 143397.3124 112914.2659 1.346742684 1.350095359 1.601522358 1.194796745 1.541443257 1.252724027 1.251060488 1.161975203 1.269966299 1 16.78486825 -7.609598475 0.44390693 1.001419075 1.425733745 0.510117952 0.117006913 0.787291692 0.421161004 0.13309773 0.085792567 2.46E-08 7.609598475 0.42431467 S(ph)PLSQGDSSAPSLPK ddPTM_HeLa_A485_30min_R1 2 SPLSQGDSSAPSLPK 15 0 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 S(1)PLSQGDSSAPSLPK;S(0.997)PLS(0.003)QGDSSAPSLPK ; 262.24 1.76E-50 300490000 423750 337460 304620 522650 411850 371700 453230 316650 259470 415700 TRUE FALSE FALSE 518011.7256 376923.0115 417311.6143 551201.0461 370844.7679 391161.6372 356393.708 238991.091 311543.249 312073.6404 1.659902211 1.207801502 1.337221605 1.766253136 1.188324549 1.253427354 1.142017979 0.765816333 0.998300429 1 18.25152698 -6.645536588 1.304410144 0.913373173 1.445812304 0.608412931 0.178800765 0.303453409 1.050984215 0.105547255 0.067934656 2.26E-07 6.645536588 0.532439131 S(ph)PLSQGDSSAPSLPK ddPTM_HeLa_A486_30min_R1 4 SPLSQGDSSAPSLPK 15 0 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 S(1)PLSQGDSSAPSLPK;S(0.998)PLS(0.002)QGDSSAPSLPK;S(0.735)PLS(0.265)QGDSSAPSLPK;S(1)PLSQGDSSAPSLPK ;;; 294.17 1.59E-69 202640000 745150 755300 336028 216449 504300 599150 614930 594630 458815 734020 TRUE FALSE FALSE 692918.833 695447.2772 466147.0407 503904.2107 441045.9916 525232.9647 461068.0099 459245.7297 498585.4536 550216.6143 1.259356433 1.263951795 0.847206407 0.91582878 0.801586103 0.954593066 0.837975441 0.834663508 0.90616212 1 19.06964018 -4.758661857 24.99999914 0.879953309 1.261654282 0.87154447 0.057440337 19.52766199 175755.8362 0.013716722 0.033095058 1.74E-05 4.758661857 0.381700973 S(ph)PLTGYVR ddPTM_HeLa_A485_30min_R1 6 SPLTGYVR 8 0 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 0 S(0.998)PLT(0.002)GYVR;S(0.999)PLT(0.001)GYVR;S(1)PLTGYVR;S(1)PLTGYVR;S(1)PLTGYVR;S(0.99)PLT(0.01)GYVR ;;;;; 140.83 0.00041726 5099630000 556135 639693 619255 547618 635042 576098 664705 643321 560323 693467 TRUE FALSE FALSE 679845.3121 714499.5318 848343.1939 577532.9847 571814.9887 606261.6005 522685.3466 485545.5161 672774.6865 520598.4392 1.305891952 1.372458075 1.629553856 1.10936365 1.098380144 1.16454748 1.00400867 0.932668021 1.292310226 1 18.98981146 -5.362313146 7.395021784 1.08159812 1.42867935 0.639207617 0.120558485 0.165756636 10.64871003 0.033856291 0.050345372 4.34E-06 5.362313146 0.347081231 S(ph)PLTGYVR ddPTM_HeLa_A486_30min_R1 5 SPLTGYVR 8 0 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 0 S(1)PLTGYVR;S(1)PLTGYVR;S(1)PLTGYVR;S(1)PLTGYVR;S(1)PLTGYVR ;;;; 127.12 0.00059005 3744060000 275120 333165 234879 85163 320355 279557 297361 306008 259541 321512 TRUE FALSE FALSE 255835.5087 306763.792 325830.4391 198263.7679 280173.0887 245068.0997 222958.1326 236336.6585 282038.2229 241003.3025 1.061543581 1.272861363 1.351974997 0.822659963 1.162528006 1.016866147 0.925124803 0.980636597 1.170267046 1 17.87869339 -5.24964583 24.98966342 1.013308463 1.233200111 0.419660095 0.117230284 717.1039698 1519487.725 0.031305052 0.053685798 5.63E-06 5.24964583 0.219891648 S(ph)PLTILQDDNS(ph)PGTLTLR ddPTM_HeLa_A485_30min_R1 2 SPLTILQDDNSPGTLTLR 18 0 Q99618;J3KMY0 Q99618 CDCA3 Cell division cycle-associated protein 3 2 0 S(0.998)PLT(0.002)ILQDDNS(1)PGTLTLR;S(0.993)PLT(0.025)ILQDDNS(0.977)PGT(0.003)LT(0.002)LR ; 155.66 2.99E-08 110367000 95028 94419 82724 85884 106933 90602 100580 86738 78720 120863 TRUE FALSE FALSE 116166.6508 105460.4807 113327.05 90575.62545 96286.37506 95345.78062 79090.26134 65465.3695 94518.38194 90734.07842 1.280297908 1.162302881 1.249002051 0.998253655 1.061193068 1.050826572 0.871670961 0.721508067 1.041707632 1 16.46935689 -5.603825751 0.759176157 0.896808483 1.266417525 0.606992384 0.099108537 0.514347922 0.611991566 0.054799569 0.118009947 2.49E-06 5.603825751 0.369609042 S(ph)PLTILQDDNS(ph)PGTLTLR ddPTM_HeLa_A486_30min_R1 3 SPLTILQDDNSPGTLTLR 18 0 Q99618;J3KMY0 Q99618 CDCA3 Cell division cycle-associated protein 3 2 0 S(0.995)PLT(0.005)ILQDDNS(0.953)PGT(0.024)LT(0.024)LR;S(1)PLTILQDDNS(1)PGTLTLR;S(1)PLTILQDDNS(0.998)PGT(0.002)LTLR ;; 280.39 6.19E-69 124778000 114943 136708 100315 43179 131144 121335 123108 128011 104709 129460 TRUE FALSE FALSE 106886.0893 125874.7602 139159.6545 100522.8941 114694.6967 106365.9213 92305.0763 98865.68976 113785.2604 97042.37336 1.101437296 1.297111312 1.434009183 1.03586599 1.181903252 1.096077081 0.951183211 1.018788869 1.172531715 1 16.56632721 -5.284703755 24.73367467 1.0673751 1.279478487 0.48056774 0.101134149 581.3898021 618106.9617 0.029324559 0.043526974 5.19E-06 5.284703755 0.212103387 S(ph)PLTILQDDNSPGTLTLR ddPTM_HeLa_A485_30min_R1 2 SPLTILQDDNSPGTLTLR 18 0 Q99618;J3KMY0 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 S(0.853)PLT(0.147)ILQDDNSPGTLTLR;S(0.999)PLT(0.001)ILQDDNSPGTLTLR ; 191.36 3.55E-18 41989000 15401.3 15303.4 15350.3 15083.1 17646.8 14132.9 20812.5 17138.9 14987.7 20479.5 TRUE FALSE FALSE 18827.26605 17092.99951 21029.01475 15907.05156 15889.82263 14872.87679 16365.73935 12935.5579 17995.59391 15374.33755 1.224590392 1.111787708 1.36779973 1.034649559 1.03352893 0.967383261 1.064484197 0.841373351 1.170495565 1 13.90823663 -5.406588856 7.298321868 1.007826946 1.221834677 0.517940648 0.096553642 0.200592747 11.39748047 0.025608821 0.038048488 3.92E-06 5.406588856 0.21400773 S(ph)PLTILQDDNSPGTLTLR ddPTM_HeLa_A486_30min_R1 2 SPLTILQDDNSPGTLTLR 18 0 Q99618;J3KMY0 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 S(0.998)PLT(0.002)ILQDDNSPGTLTLR;S(1)PLTILQDDNSPGTLTLR ; 123.36 1.38E-05 59494000 13950.6 18118 12103.4 5696.9 19529.7 16456.3 20496.5 17029.9 14308.1 18552.7 TRUE FALSE FALSE 12972.73498 16682.2637 16790.16062 13262.67111 17080.10292 14426.08902 15368.05891 13152.56353 15548.33763 13906.98316 0.93282165 1.199560214 1.207318685 0.95366989 1.228167369 1.037326993 1.105060582 0.94575246 1.118023762 1 13.76352187 -7.193308182 24.9812184 1.023915215 1.100685434 0.09427046 0.103325482 385.2566481 141258.9082 0.046478524 0.026834387 6.41E-08 7.193308182 0.076770219 S(ph)PLTQEQLIPNLAMK ddPTM_HeLa_A485_30min_R1 3 SPLTQEQLIPNLAMK 15 0 Q9UNE7;H3BTA3;Q9UNE7-2 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 S(0.981)PLT(0.019)QEQLIPNLAMK;S(0.981)PLT(0.019)QEQLIPNLAMK;S(0.998)PLT(0.002)QEQLIPNLAMK ;; 176.4 8.46E-13 293262000 369198 362224 323058 446623 449051 412127 508350 488558 376610 569294 TRUE FALSE FALSE 451324.8214 404582.9459 442570.5978 471020.8836 404341.9057 433705.3325 399736.8697 368738.3845 452192.1725 427379.4829 1.056028283 0.94665973 1.035544792 1.102113935 0.946095734 1.014801482 0.935320683 0.862789159 1.058057746 1 18.70515812 -5.805930474 24.99996948 0.963205244 1.02880363 0.211151272 0.060889552 210.7272556 118408.5324 0.018984874 0.021526927 1.56E-06 5.805930474 0.065598385 S(ph)PLTQEQLIPNLAMK ddPTM_HeLa_A486_30min_R1 2 SPLTQEQLIPNLAMK 15 0 Q9UNE7;H3BTA3;Q9UNE7-2 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 S(0.984)PLT(0.016)QEQLIPNLAMK;S(1)PLTQEQLIPNLAMK ; 266.45 9.09E-51 471630000 433210 452660 276580 170120 408850 434570 487120 444510 361330 499070 TRUE FALSE FALSE 402844.2161 416789.573 383679.1831 396047.9574 357568.2206 380957.1718 365237.4238 343304.7766 392650.3753 374099.6236 1.076836732 1.114113853 1.025606974 1.058669756 0.955810159 1.018330807 0.976310589 0.917682764 1.049587732 1 18.51306299 -5.27986775 1.179436319 0.982509955 1.096233929 0.504179434 0.039448343 0.398542514 1.05947738 0.013617857 0.035597982 5.25E-06 5.27986775 0.113723974 S(ph)PLWEK ddPTM_HeLa_A485_30min_R1 2 SPLWEK 6 0 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 S(1)PLWEK;S(1)PLWEK ; 90.657 0.015585 177222000 376470 347350 273160 513140 376170 309780 416520 359050 339950 613410 TRUE FALSE FALSE 460214.4527 387969.561 374213.2511 541171.5389 338717.194 325999.6018 327527.0993 270992.4245 408174.8468 460498.176 0.999383878 0.842499669 0.812627 1.17518715 0.735545137 0.707928107 0.711245161 0.588476651 0.886376685 1 18.81283592 S(ph)PLWEK ddPTM_HeLa_A486_30min_R1 4 SPLWEK 6 0 H7C1N2;J3KR05;O75128-2;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 S(1)PLWEK;S(1)PLWEK;S(1)PLWEK;S(1)PLWEK ;;; 103.56 0.010814 271048000 806470 940290 480343 289452 654940 844040 852970 780160 745160 999630 TRUE FALSE FALSE 749940.6176 865777.9959 666344.6736 673858.8841 572791.3181 739910.9264 639547.8842 602534.5988 809751.0688 749316.1415 1.000833395 1.15542419 0.889270412 0.899298503 0.764418763 0.987448268 0.853508751 0.804112664 1.080653444 1 19.515215 -4.775445289 24.84894944 0.898032803 1.078128782 0.323506618 0.096138645 191.4498737 339666.9934 0.023945535 0.050253041 1.68E-05 4.775445289 0.180095979 S(ph)PLYLVSR ddPTM_HeLa_A485_30min_R1 2 SPLYLVSR 8 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 S(1)PLYLVSR;S(0.999)PLY(0.001)LVSR ; 80.102 0.0090959 201382000 344930 392930 270740 327350 471530 352270 454000 517260 357860 480520 TRUE FALSE FALSE 421658.4885 438879.7455 370897.9924 345232.3016 424582.8176 370714.3125 356999.1912 390401.174 429679.2195 360735.2073 1.16888643 1.216625759 1.028172424 0.95702414 1.17699301 1.027663242 0.989643328 1.082237514 1.19112083 1 18.46058071 -4.760206663 24.999996 1.056861591 1.192756129 0.356067846 0.073236084 34.13267782 692150.1055 0.01913762 0.045235295 1.74E-05 4.760206663 0.135894538 S(ph)PLYLVSR ddPTM_HeLa_A486_30min_R1 2 SPLYLVSR 8 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 S(1)PLYLVSR;S(1)PLYLVSR ; 82.831 0.0070129 176704000 144926 139635 100284 45561 162446 128610 147824 149720 107222 142527 TRUE FALSE FALSE 134767.4358 128569.8141 139116.6505 106068.3105 142070.5079 112743.4058 110836.8717 115632.0244 116516.0893 106837.3115 1.261426686 1.203416786 1.302135448 0.992802131 1.32978363 1.055281196 1.037435987 1.08231874 1.090593611 1 16.70505605 -5.468028686 0.307600755 1.003885188 1.348739531 0.414013617 0.092369598 3.657682557 0.498216489 0.111246309 0.451381013 3.40E-06 5.468028686 0.344854343 S(ph)PMCNQPSINK ddPTM_HeLa_A485_30min_R1 4 SPMCNQPSINK 11 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(1)PMCNQPSINK;S(1)PMCNQPSINK;S(1)PMCNQPSINK;S(1)PMCNQPSINK ;;; 218.02 8.84E-18 735250000 433535 460533 354852 527320 567160 449760 578660 595330 442783 644380 TRUE FALSE FALSE 529973.3651 514388.3282 486126.5214 556126.1564 510691.559 473308.7381 455024.5638 449324.3841 531645.4867 483747.9249 1.095556875 1.063339607 1.004917016 1.149619725 1.055697674 0.978420193 0.940623288 0.92883992 1.099013472 1 18.88389595 -6.199645163 4.703153853 0.981764059 1.074983513 0.373975671 0.054546274 0.228458856 10.35022456 0.018494772 0.018270452 6.31E-07 6.199645163 0.093219454 S(ph)PMCNQPSINK ddPTM_HeLa_A486_30min_R1 3 SPMCNQPSINK 11 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(1)PMCNQPSINK;S(1)PMCNQPSINK;S(1)PMCNQPSINK ;; 208.51 5.51E-15 544370000 387268 427480 261157 134419 417800 398730 426410 404170 340028 496490 TRUE FALSE FALSE 360122.5131 393604.9279 362283.9844 312934.2252 365395.6282 349538.7466 319717.7079 312149.314 369501.9008 372165.6724 0.967640327 1.057606752 0.973448148 0.840846559 0.981809058 0.939202007 0.859073611 0.838737522 0.992842511 1 18.50558547 -5.006806597 24.321699 0.915025024 1.013349543 0.266899526 0.060680938 250.9809525 896836.2941 0.015694588 0.030819493 9.84E-06 5.006806597 0.098324519 S(ph)PMHYMYRPR ddPTM_HeLa_A486_30min_R1 1 SPMHYMYRPR 10 1 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LNQ0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 S(0.994)PMHY(0.006)MYRPR 47.706 0.026652 32370000 74869 57461 31701 32291 54468 66988 81804 79481 43766 124860 TRUE FALSE FALSE 69621.06972 52907.58109 43976.47618 75175.0799 47636.11555 58723.70164 61335.77397 61384.91136 47559.67212 93594.2433 0.743860597 0.565286702 0.469863045 0.803201963 0.508964161 0.627428564 0.655337036 0.65586204 0.508147408 1 16.51413218 -10.23156635 4.566538276 1.000119321 0.614699943 0.567055519 0.100834562 0.000116437 1.96E-05 0.092805123 0.022501617 5.87E-11 10.23156635 -0.385419378 S(ph)PMLER ddPTM_HeLa_A485_30min_R1 2 SPMLER 6 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PMLER;S(1)PMLER ; 95.815 0.013678 1952050000 3309930 5203540 6302100 1443670 5882200 3662530 3064190 3069180 5202500 1871130 TRUE FALSE FALSE 4046212.509 5812048.738 8633509.042 1522534.037 5296547.514 3854294.407 2409500.774 2316458.793 6246594.03 1404691.727 2.88049857 4.137597331 6.14619484 1.083891937 3.770612024 2.743872078 1.715323532 1.649086948 4.446950111 1 20.42182212 -5.26958488 24.92819534 2.421171068 4.363046992 0.347927403 1.279049739 665.3227129 2036129.31 0.352897317 0.533794896 5.38E-06 5.26958488 1.941875923 S(ph)PMLER ddPTM_HeLa_A486_30min_R1 1 SPMLER 6 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PMLER 98.933 0.012525 962270000 2693900 4632400 5562100 363040 5221300 2516500 2056600 2748900 4292600 885200 TRUE FALSE FALSE 2505071.521 4265311.753 7715894.078 845175.467 4566395.867 2206039.816 1542016.928 2123035.478 4664686.024 663540.1583 3.775312602 6.428113958 11.62837544 1.273736723 6.881868128 3.32465155 2.323924043 3.199558386 7.029998058 1 19.33982426 -5.283946205 24.9995246 3.742967385 7.192353576 0.293561002 2.621082713 1027.9614 1141808.856 0.729967329 1.083611325 5.20E-06 5.283946205 3.449386191 S(ph)PMMPENAENEGDALLQFTAEFSSR ddPTM_HeLa_A485_30min_R1 3 SPMMPENAENEGDALLQFTAEFSSR 25 0 B3KT28;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 0 S(1)PMMPENAENEGDALLQFTAEFSSR;S(1)PMMPENAENEGDALLQFTAEFSSR;S(1)PMMPENAENEGDALLQFTAEFSSR ;; 154.14 1.38E-09 36854400 24504.1 36443 39153.3 32733.5 40016.3 32326.1 44072.8 45815.7 32042.7 47111.9 TRUE FALSE FALSE 29954.95251 40704.69184 53637.73497 34521.64822 36032.13667 34018.64461 34656.28624 34579.32774 38473.37598 35367.77036 0.846956203 1.150897877 1.516571003 0.976076464 1.018784512 0.961854374 0.979883263 0.977707313 1.087808917 1 15.11014765 S(ph)PMMPENAENEGDALLQFTAEFSSR ddPTM_HeLa_A486_30min_R1 3 SPMMPENAENEGDALLQFTAEFSSR 25 0 B3KT28;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 0 S(1)PMMPENAENEGDALLQFTAEFSSR;S(1)PMMPENAENEGDALLQFTAEFSSR;S(1)PMMPENAENEGDALLQFTAEFSSR ;; 93.966 0.0018961 29660000 32482 33326.7 29986 16289.3 38867.7 30287.4 34671.6 34987.5 31381.2 35868.5 TRUE FALSE FALSE 30205.17954 30685.77092 41597.38225 37922.31362 33992.55064 26550.84853 25996.39896 27021.61002 34101.34768 26886.79414 1.123420642 1.141295268 1.547130612 1.410443857 1.26428426 0.987505182 0.96688355 1.005014205 1.268330747 1 14.71461012 -6.172616025 5.027024966 1.041435761 1.313133104 0.450518853 0.1391246 0.222085939 9.375408237 0.050249811 0.050152554 6.72E-07 6.172616025 0.271697342 S(ph)PMVER ddPTM_HeLa_A485_30min_R1 2 SPMVER 6 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PMVER;S(1)PMVER ; 122.18 0.0059019 3485100000 550670 748060 666400 577060 880180 695470 752810 768530 622450 737540 TRUE FALSE FALSE 673164.6417 835539.1097 912929.0912 608583.3266 792546.1887 731883.7338 591965.9936 580046.8125 747370.0056 553684.8514 1.215790246 1.509051778 1.648824397 1.099151124 1.431403057 1.321841715 1.069138865 1.047611852 1.349811185 1 19.07870553 -6.644162816 4.667966595 1.121548993 1.386198425 0.365175142 0.165332054 0.2436256 8.862274109 0.065604328 0.049850855 2.27E-07 6.644162816 0.264649433 S(ph)PMVER ddPTM_HeLa_A486_30min_R1 2 SPMVER 6 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PMVER;S(1)PMVER ; 107.01 0.0098282 2010720000 487449 733350 658360 192298 840650 573230 615030 629270 546380 594500 TRUE FALSE FALSE 453281.3423 675236.6752 913294.6235 447679.4622 735207.8382 502510.7108 461142.9889 485998.9579 593740.6583 445633.3305 1.017162118 1.515229291 2.049430689 1.004591514 1.64980442 1.127632689 1.034803632 1.09058036 1.332352447 1 18.76549762 -6.290869282 19.73736205 1.117591996 1.459883332 0.240606079 0.29285258 79.61560816 53393.11649 0.102708014 0.090632608 5.12E-07 6.290869282 0.342291336 S(ph)PMVERR ddPTM_HeLa_A485_30min_R1 1 SPMVERR 7 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PMVERR 108.43 0.0016677 0 18793 40470 28983 15020 43760 26837 41759 61392 27112 19421 TRUE FALSE FALSE 22973.43801 45202.61446 39705.01778 15840.50457 39403.10075 28242.14382 32836.84851 46335.51574 32553.12971 14579.70212 1.575713813 3.100379836 2.723307888 1.086476558 2.70259985 1.937086478 2.252230412 3.178083843 2.232770564 1 13.83167362 -8.045970234 23.0686264 0.999999992 2.34001779 0.284880552 0.623255057 6100.844458 3061500.203 0.593663323 0.153283211 9.00E-09 8.045970234 1.340017798 S(ph)PNELVDDLFK ddPTM_HeLa_A485_30min_R1 4 SPNELVDDLFK 11 0 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK ;;; 167.55 4.65E-08 441813000 204110 112295 136897 399541 278458 137958 257563 173922 176113 516977 TRUE FALSE FALSE 249513.5653 125426.9234 187540.8971 421366.9131 250733.7438 145181.2676 202532.561 131267.3568 211457.2637 388104.1482 0.642903629 0.323178518 0.483223119 1.08570577 0.646047575 0.374078113 0.52185106 0.338227142 0.544846698 1 18.56608433 -10.02468073 6.062086301 1.000000552 0.548602829 0.293018491 0.209142269 1.67E-06 2.69E-07 0.216510281 0.052511392 9.45E-11 10.02468073 -0.451397724 S(ph)PNELVDDLFK ddPTM_HeLa_A486_30min_R1 6 SPNELVDDLFK 11 0 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-4 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK ;;;;; 227.47 3.59E-18 828610000 330850 634345 338688 355370 598115 730026 868120 805037 467928 664871 TRUE FALSE FALSE 307659.1235 584077.192 469837.064 827319.3194 523093.8395 639962.8145 650907.194 621747.6489 508488.3758 498382.974 0.617314675 1.171944513 0.942722943 1.660007188 1.049582082 1.284078405 1.306038183 1.247529874 1.020276378 1 18.92689526 -3.982296689 1.565633593 1.220643229 2.05E-14 0.416805682 0.199804143 2.125792625 2.825147184 0.052778964 4.891183661 0.000104161 3.982296689 -1.220643229 S(ph)PNLAGK ddPTM_HeLa_A485_30min_R1 2 SPNLAGK 7 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 S(1)PNLAGK;S(1)PNLAGK ; 81.338 0.011598 662430000 823540 795950 666900 942730 1018880 881510 1156100 973600 744840 1331920 TRUE FALSE FALSE 1006733.632 889029.4287 913614.062 994228.9528 917436.7297 927664.5005 909089.7905 734823.0735 894322.5559 999896.8562 1.006837481 0.889121136 0.913708305 0.994331512 0.917531367 0.927760193 0.909183567 0.734898874 0.894414809 1 19.93141976 -7.012266854 24.15442295 0.853202351 0.937479437 0.123541236 0.069772779 540.5795493 1064441.135 0.029573927 0.018243117 9.72E-08 7.012266854 0.084277086 S(ph)PNLAGK ddPTM_HeLa_A486_30min_R1 2 SPNLAGK 7 0 Q9Y4B5 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 S(1)PNLAGK;S(1)PNLAGK ; 81.338 0.011598 614500000 906920 921310 590610 342600 893120 923220 1097200 984220 737110 1069340 TRUE FALSE FALSE 843349.5913 848302.0402 819310.0091 797590.114 781096.5616 809322.503 822668.955 760134.5914 801003.2883 801570.3038 1.052121801 1.058300234 1.022131191 0.99503451 0.974457958 1.009671266 1.026321648 0.948306827 0.999292619 1 19.61246954 -4.997518431 2.50039712 0.992338416 1.055961604 0.61203388 0.019704831 0.190337552 2.369384721 0.005726199 0.01367257 1.01E-05 4.997518431 0.063623189 S(ph)PNRDFLTHVSAR ddPTM_HeLa_A485_30min_R1 4 SPNRDFLTHVSAR 13 1 O15067 O15067 PFAS Phosphoribosylformylglycinamidine synthase 1 0 S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR ;;; 166.36 1.64E-10 2647760000 165271 311901 320627 93263 359202 245032 249862 287887 204862 174522 TRUE FALSE FALSE 202034.9638 348375.1088 439240.2697 98357.72154 323438.5876 257861.4966 196476.9425 217282.2619 245975.9243 131016.8772 1.542052963 2.659009405 3.352547236 0.750725583 2.468678803 1.968154806 1.499630785 1.658429558 1.877436934 1 16.99939314 -7.597301278 0.224737914 0.782833785 2.557390921 0.208369038 0.659075561 3.814960745 0.883154114 2.715249704 2.37734138 2.53E-08 7.597301278 1.774557136 S(ph)PNRDFLTHVSAR ddPTM_HeLa_A486_30min_R1 6 SPNRDFLTHVSAR 13 1 O15067 O15067 PFAS Phosphoribosylformylglycinamidine synthase 1 0 S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR;S(1)PNRDFLTHVSAR ;;;;; 211.74 2.28E-22 3426340000 295291 383385 322745 46435.5 441923 229726 249078 276856 332529 172082 TRUE FALSE FALSE 274592.6258 353004.1763 447720.5074 108104.1907 386492.8966 201384.7418 186756.0499 213821.9325 361352.8815 128991.5471 2.128764496 2.736645805 3.470929044 0.838071898 2.996265299 1.56122433 1.447816187 1.65764298 2.80136869 1 16.976917 -5.250950754 24.9920951 1.815421519 2.774566305 0.297581268 0.715169377 940.9761973 2242135.926 0.188235617 0.321568587 5.61E-06 5.250950754 0.959144786 S(ph)PNREWEGK ddPTM_HeLa_A486_30min_R1 2 SPNREWEGK 9 1 H0Y459 H0Y459 NCOR1 1 0 S(1)PNREWEGK;S(1)PNREWEGK ; 142.91 5.53E-05 1025850000 438280 471810 248060 144387 364450 468590 487500 423320 379220 577380 TRUE FALSE FALSE 407558.8353 434422.0573 344115.4753 336140.2329 318737.2826 410780.1301 365522.3438 326939.277 412091.0949 432800.2899 0.941678748 1.00374715 0.795090677 0.776663604 0.736453487 0.949121661 0.844551985 0.755404478 0.952150691 1 18.72334194 -4.758098885 24.99999695 0.838946603 0.97271298 0.227604983 0.087256077 106.2606169 795210.0518 0.021851276 0.053106436 1.75E-05 4.758098885 0.133766377 S(ph)PNREWEVLQPAPHQVITNLPEGVR ddPTM_HeLa_A485_30min_R1 4 SPNREWEVLQPAPHQVITNLPEGVR 25 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(1)PNREWEVLQPAPHQVITNLPEGVR;S(1)PNREWEVLQPAPHQVITNLPEGVR;S(1)PNREWEVLQPAPHQVITNLPEGVR;S(1)PNREWEVLQPAPHQVITNLPEGVR ;;; 190.73 7.63E-21 1317530000 378565 506976 571643 260164 537923 479214 438177 484943 492356 331635 TRUE FALSE FALSE 462775.4782 566262.4331 783117.5337 274376.1005 484365.4974 504304.904 344556.9044 366009.9689 591167.333 248964.4978 1.858801083 2.27447061 3.145498819 1.102069182 1.945520352 2.025609709 1.383959992 1.470129164 2.374504551 1 17.9255805 -5.269933352 24.98640477 1.655441608 2.411078232 0.359305848 0.494483086 699.4346309 2057499.815 0.136721183 0.206501626 5.37E-06 5.269933352 0.755636624 S(ph)PNREWEVLQPAPHQVITNLPEGVR ddPTM_HeLa_A486_30min_R1 1 SPNREWEVLQPAPHQVITNLPEGVR 25 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(1)PNREWEVLQPAPHQVITNLPEGVR 165.87 4.36E-14 445110000 83138 117780 100480 13462 121700 77732 61448 76774 93261 51508 TRUE FALSE FALSE 77310.45553 108446.6839 139388.5469 31340.21633 106435.2512 68142.21616 46073.06047 59294.23616 101344.9386 38610.06154 2.002339609 2.808767444 3.610161222 0.811711121 2.756671369 1.76488235 1.193291558 1.535719805 2.62483235 1 15.23668923 -5.25801362 24.99637787 1.721328789 2.807257174 0.357784866 0.695966519 343.9793679 2509866.998 0.188298782 0.309969233 5.52E-06 5.25801362 1.085928385 S(ph)PNSHDSEPWTLLR ddPTM_HeLa_A485_30min_R1 2 SPNSHDSEPWTLLR 14 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.999)PNS(0.001)HDSEPWTLLR;S(0.999)PNS(0.001)HDSEPWTLLR ; 205.65 4.06E-22 286290000 75606 165321 160118 35454 137525 81465 84458 74624 121084 78303 TRUE FALSE FALSE 92424.29386 184653.8528 219352.3113 37390.76225 123832.5281 85730.38143 66412.85834 56322.34699 145384.4482 58783.50316 1.57228285 3.141252952 3.731528396 0.636075774 2.106586397 1.458408853 1.129787351 0.958131856 2.473218511 1 15.84312372 -5.264008599 24.99998002 1.414147535 2.847644547 0.450408367 0.718525729 200.6856556 1952792.532 0.196795189 0.307723045 5.44E-06 5.264008599 1.433497012 S(ph)PNSHDSEPWTLLR ddPTM_HeLa_A486_30min_R1 2 SPNSHDSEPWTLLR 14 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(1)PNSHDSEPWTLLR;S(0.998)PNS(0.002)HDSEPWTLLR ; 156.83 1.34E-08 206008000 101559 136776 136759 10945.7 131960 71915 89875 82669 131596 42168 TRUE FALSE FALSE 94440.23855 125937.3716 189715.7473 25482.14277 115408.3463 63042.85848 67387.3244 63847.07335 143002.8472 31608.85833 2.987777589 3.984242971 6.001980373 0.806170931 3.651139345 1.994468064 2.131912633 2.019910769 4.52413832 1 14.94804131 -5.263901627 24.99981782 2.382527169 4.290624525 0.35261772 1.251281983 247.0887619 2508761.422 0.337166003 0.527664915 5.45E-06 5.263901627 1.908097356 S(ph)PNVFR ddPTM_HeLa_A485_30min_R1 1 SPNVFR 6 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 S(1)PNVFR 75.043 0.025037 387500000 61489 90204 80085 76182 112890 79925 105310 130860 85268 97094 TRUE FALSE FALSE 75167.01592 100752.5731 109711.7741 80343.62976 101650.2752 84109.74941 82809.6582 98766.37982 102380.5055 72890.25268 1.031235497 1.382250293 1.50516386 1.102254784 1.394566097 1.153923142 1.136086859 1.3550012 1.404584313 1 16.15343828 -6.279557994 24.74473863 1.227492179 1.290893382 0.039421193 0.167676148 3358.697962 4586987.911 0.059179648 0.052292141 5.25E-07 6.279557994 0.063401203 S(ph)PNVFR ddPTM_HeLa_A486_30min_R1 1 SPNVFR 6 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 S(1)PNVFR 66.692 0.031599 244590000 116750 117510 86351 33563 117030 106770 127590 111410 91624 115240 TRUE FALSE FALSE 108566.4279 108198.0796 119788.4198 78136.36018 102351.0061 93597.80296 95665.63249 86044.37506 99566.04209 86383.15391 1.256800927 1.252536805 1.386710421 0.904532384 1.184849146 1.083519167 1.107457046 0.996078184 1.15260948 1 16.39846237 -5.249920224 24.99640908 1.069126654 1.294068128 0.624240596 0.084225656 485.010699 1052464.834 0.021759591 0.037272098 5.62E-06 5.249920224 0.224941474 S(ph)PPADAIPK ddPTM_HeLa_A485_30min_R1 8 SPPADAIPK 9 0 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2;M0R1Q8 C9JRH2 RCC1 Regulator of chromosome condensation 1 0 S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK ;;;;;;; 104.82 0.0011896 10763600000 7988850 5784894 6738080 14795650 11801760 6506180 10682830 8540650 8208640 18401860 TRUE FALSE FALSE 9765942.121 6461387.031 9230776.187 15603898.89 10626735.34 6846833.524 8400356.1 6446042.196 9856038.754 13814614.96 0.706928289 0.467721109 0.668189176 1.129521086 0.769238619 0.495622465 0.608077469 0.466610341 0.713450124 1 23.71969202 -8.032505232 23.52618017 1.000000006 0.664192384 0.22885484 0.184014176 3567.189351 2581807.831 0.193723133 0.050019098 9.28E-09 8.032505232 -0.335807622 S(ph)PPADAIPK ddPTM_HeLa_A486_30min_R1 8 SPPADAIPK 9 0 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2;M0R1Q8 C9JRH2 RCC1 Regulator of chromosome condensation 1 0 S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK ;;;;;;; 103.69 0.0013274 15677810000 4733940 8905190 5422860 3750550 9085030 9382960 10822160 10227530 6816880 7893420 TRUE FALSE FALSE 4402115.252 8199510.312 7522736.621 8731469.942 7945500.823 8225385.794 8114341.103 7898944.684 7407772.647 5916856.254 0.743995639 1.385788324 1.271407703 1.475694113 1.342858518 1.390161505 1.371393989 1.334990127 1.251977795 1 22.49639942 -4.258312057 24.90536371 1.333103825 0.743995411 0.659300968 0.122177777 153.2746359 1220586.146 0.027782716 0.192527627 5.52E-05 4.258312057 -0.589108414 S(ph)PPAIR ddPTM_HeLa_A485_30min_R1 3 SPPAIR 6 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PPAIR;S(1)PPAIR;S(1)PPAIR ;; 76.035 0.024335 876290000 155099 202598 170700 133347 185739 165425 180508 199790 148433 178498 TRUE FALSE FALSE 189600.2375 226290.0737 233849.0334 140631.409 167246.173 174086.3972 141940.9912 150791.1892 178222.1416 134001.7336 1.41490884 1.688710046 1.745119463 1.049474549 1.248089622 1.299135411 1.059247424 1.125292824 1.329998775 1 17.03189214 -5.261569936 24.99999836 1.16939504 1.623492521 0.722414781 0.129817457 6.052043185 1158991.97 0.035617234 0.056867582 5.48E-06 5.261569936 0.454097481 S(ph)PPAIR ddPTM_HeLa_A486_30min_R1 2 SPPAIR 6 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PPAIR;S(1)PPAIR ; 79.469 0.021902 649330000 175080 171709 128705 40696 154288 121607 141033 138350 133058 153533 TRUE FALSE FALSE 162807.7961 158102.1535 178543.0228 94742.34466 134935.7604 106604.3647 105745.0517 106850.7252 144591.5746 115087.3375 1.414645605 1.373758026 1.551369827 0.823221275 1.172464003 0.926290999 0.918824382 0.928431637 1.256363886 1 16.81236958 -5.256193908 24.99348879 1.00094998 1.439307856 0.718566009 0.126996918 224.3716612 1069077.308 0.033724618 0.056231814 5.54E-06 5.256193908 0.438357876 S(ph)PPAPGLQPMR ddPTM_HeLa_A485_30min_R1 7 SPPAPGLQPMR 11 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR ;;;;;; 118.9 0.00022385 14455160000 920688 995893 850567 886395 1166511 881197 1176137 1168856 900363 1136795 TRUE FALSE FALSE 1125491.869 1112354.023 1165227.128 934816.5144 1050369.069 927335.1123 924845.7218 882192.2333 1081057.595 853412.9277 1.318812773 1.303418295 1.365373186 1.095385931 1.230786452 1.086619481 1.083702498 1.033722603 1.266746214 1 19.70288444 -5.264173404 24.99045905 1.117738352 1.326623112 0.615998517 0.077866345 156.2532673 1428243.459 0.021075983 0.032918662 5.44E-06 5.264173404 0.208884759 S(ph)PPAPGLQPMR ddPTM_HeLa_A486_30min_R1 6 SPPAPGLQPMR 11 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR ;;;;; 105.46 0.00073626 12026040000 1515710 1702600 1420990 529841 1787940 1780610 1580070 1798500 1709240 1045980 TRUE FALSE FALSE 1409466.556 1567679.775 1971235.383 1233496.625 1563679.893 1560936.442 1184719.774 1389020.811 1857398.299 784059.7998 1.797651858 1.999439042 2.51413908 1.573217534 1.994337541 1.990838508 1.511006908 1.771575091 2.368949792 1 19.58060417 -10.73716632 2.78829859 0.826376964 1.938765288 0.475279623 0.298339217 14066386.79 12772350.88 17012541.12 0.07502954 1.83E-11 10.73716632 1.112388324 S(ph)PPAS(ph)PESWK ddPTM_HeLa_A485_30min_R1 4 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 S(1)PPAS(1)PESWK;S(1)PPAS(1)PESWK;S(1)PPAS(0.982)PES(0.018)WK;S(1)PPAS(1)PESWK ;;; 122.42 0.00032004 668930000 974810 883980 669920 1433930 950760 882340 1246110 967360 892170 1728270 TRUE FALSE FALSE 1191653.121 987353.7714 917751.2857 1512261.965 856098.9961 928537.958 979868.4187 730113.4432 1071220.336 1297444.095 0.918462017 0.760999086 0.707353241 1.165570039 0.659834978 0.715667027 0.75522978 0.562732102 0.825638915 1 20.30724095 S(ph)PPAS(ph)PESWK ddPTM_HeLa_A486_30min_R1 3 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 S(1)PPAS(0.999)PES(0.001)WK;S(1)PPAS(1)PESWK;S(1)PPAS(0.995)PES(0.005)WK ;; 145.81 1.08E-05 584874000 1064340 1183960 516284 420671 797000 1157100 1207930 1131410 884430 1495370 TRUE FALSE FALSE 989735.2623 1090138.698 716202.9914 979343.3475 697032.8283 1014348.767 905693.1378 873812.6415 961093.1045 1120919.619 0.882967204 0.972539582 0.638942329 0.873696321 0.621840154 0.904925518 0.807991155 0.779549779 0.85741483 1 20.0962514 -8.097506275 4.79060326 0.9999834 0.809182458 0.227724344 0.105089016 0.898455998 41.42911061 0.098440402 0.025683597 7.99E-09 8.097506275 -0.190800942 S(ph)PPDGQSFR ddPTM_HeLa_A485_30min_R1 1 SPPDGQSFR 9 0 P78314;P78314-3;P78314-4;H0YAD9 P78314 SH3BP2 SH3 domain-binding protein 2 1 0 S(1)PPDGQSFR 66.504 0.018517 120540000 65995 76529 56668 69368 79146 95039 86965 88263 53451 89162 TRUE FALSE FALSE 80675.36007 85478.40084 77631.85135 73157.39819 71265.94634 100015.0951 68384.21731 66616.36086 64178.12542 66935.55431 1.205269171 1.277025368 1.159799932 1.092952751 1.064694945 1.494199848 1.021642653 0.995231332 0.95880472 1 16.03048511 -6.970296237 24.98397233 0.987897875 1.208005953 0.489319048 0.111276176 179.4425528 150929.6355 0.047286488 0.03188013 1.07E-07 6.970296237 0.220108079 S(ph)PPDGQSFR ddPTM_HeLa_A486_30min_R1 1 SPPDGQSFR 9 0 P78314;P78314-3;P78314-4;H0YAD9 P78314 SH3BP2 SH3 domain-binding protein 2 1 0 S(1)PPDGQSFR 67.93 0.016333 177000000 67363 81315 71550 21735 95167 70791 75967 76948 72773 81635 TRUE FALSE FALSE 62641.20156 74871.30326 99256.07618 50600.17843 83230.26746 62057.52617 56959.2531 59428.62016 79081.02223 61193.06465 1.02366505 1.223525961 1.622015121 0.826894007 1.360125824 1.014126789 0.930812232 0.97116594 1.292320015 1 15.90108053 -6.29362703 23.87466663 1.032953264 1.213395201 0.135257192 0.213762814 777.3495925 576583.3335 0.074465472 0.065679343 5.09E-07 6.29362703 0.180441937 S(ph)PPEEPPDFCCPK ddPTM_HeLa_A485_30min_R1 2 SPPEEPPDFCCPK 13 0 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 S(1)PPEEPPDFCCPK;S(1)PPEEPPDFCCPK ; 186.16 3.01E-17 422690000 290000 249570 241060 451320 439900 265020 415890 343200 311210 639970 TRUE FALSE FALSE 354509.4995 278755.0405 330238.1253 475974.4688 396102.0114 278896.0374 327031.704 259029.6619 373666.9924 480437.2568 0.737889276 0.580211124 0.687369934 0.990710987 0.824461479 0.5805046 0.680695969 0.539153986 0.777764395 1 18.87398851 -8.02026069 23.6018835 1.000000013 0.703870764 0.338896769 0.12507141 915.9968932 1067054.752 0.130760979 0.03376234 9.54E-09 8.02026069 -0.296129248 S(ph)PPEEPPDFCCPK ddPTM_HeLa_A486_30min_R1 3 SPPEEPPDFCCPK 13 0 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 S(1)PPEEPPDFCCPK;S(1)PPEEPPDFCCPK;S(1)PPEEPPDFCCPK ;; 172.99 2.97E-12 348500000 437157 618724 351366 274468 609460 611452 739380 713650 428885 607800 TRUE FALSE FALSE 406514.5518 569694.0569 487424.3251 638975.3748 533015.8438 536017.269 554379.3036 551167.4739 466061.0971 455602.9239 0.89225624 1.250417912 1.069844594 1.402483042 1.169913132 1.176500942 1.216803656 1.209754031 1.022954579 1 18.79741748 -9.628267867 8.719491731 0.99998865 1.168485344 0.10783332 0.131447191 0 0 0.121381235 0.029439274 2.35E-10 9.628267867 0.168496694 S(ph)PPEFQ ddPTM_HeLa_A486_30min_R1 1 SPPEFQ 6 0 Q96GX2 Q96GX2 ATXN7L3B Putative ataxin-7-like protein 3B 1 0 S(1)PPEFQ 77.058 0.0079731 109250000 81935 89320 62288 29158 78796 85530 79235 96689 68900 96463 TRUE FALSE FALSE 76191.77961 82241.9579 86407.58173 67881.29756 68912.67094 74978.17821 59409.56494 74675.02541 74872.30748 72308.03693 1.053711079 1.137383359 1.194992775 0.938779428 0.953043035 1.03692731 0.821617727 1.032734791 1.035463147 1 16.14186839 -5.268860361 24.98114967 0.970834129 1.129564501 0.516449945 0.068507564 429.3436052 1445293.79 0.019339662 0.029347153 5.38E-06 5.268860361 0.158730372 S(ph)PPEGDTTLFLSR ddPTM_HeLa_A485_30min_R1 4 SPPEGDTTLFLSR 13 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR ;;; 129.17 2.33E-05 874925000 147558 150844 144312 145969 149136 166105 119268 120132 128918 139999 TRUE FALSE FALSE 180381.768 168483.8936 197699.0141 153942.9169 134287.4962 174802.001 93785.41747 90669.43864 154790.6601 105099.8258 1.716289886 1.603084423 1.881059389 1.464730466 1.277713785 1.663199721 0.892346079 0.862698277 1.472796543 1 16.68140075 -6.151052905 0.876964011 1.060593318 1.722116684 0.540107326 0.2319708 0.460335302 0.771398186 0.140531263 0.146875895 7.06E-07 6.151052905 0.661523366 S(ph)PPEGDTTLFLSR ddPTM_HeLa_A486_30min_R1 4 SPPEGDTTLFLSR 13 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR ;;; 151.3 5.44E-08 738662000 76222 103904 92918 60007.6 117389 89930 75563 81281 57294 91287.2 TRUE FALSE FALSE 70879.23141 95670.26863 128898.338 139700.7254 102664.977 78835.35094 56656.33818 62775.09065 62260.29005 68428.29094 1.035817648 1.398109865 1.883699509 2.041563855 1.500329405 1.152087095 0.827966582 0.917385043 0.90986183 1 16.06230529 -6.368364609 2.805981652 0.912443715 1.611742901 0.595114348 0.257084007 0.208586753 3.185157688 0.110086791 0.095430512 4.28E-07 6.368364609 0.699299186 S(ph)PPEHYVQETPLMFSR ddPTM_HeLa_A485_30min_R1 4 SPPEHYVQETPLMFSR 16 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(1)PPEHYVQETPLMFSR;S(1)PPEHYVQETPLMFSR;S(0.999)PPEHY(0.001)VQETPLMFSR;S(0.999)PPEHY(0.001)VQETPLMFSR ;;; 147.25 4.90E-08 680660000 150738 189809 171506 152162 175802 160850 179726 178841 165295 201055 TRUE FALSE FALSE 184269.1481 212005.5114 234953.2064 160474.2248 158298.5356 169271.8573 141326.0719 134979.9643 198468.1903 150935.6886 1.220845446 1.404608236 1.556644479 1.063196029 1.048781352 1.12148332 0.936333038 0.894287929 1.314918904 1 17.20357444 -5.285184637 20.58564021 1.047411555 1.395089967 0.584989737 0.131104002 54.65378321 47381.1421 0.036784431 0.054647453 5.19E-06 5.285184637 0.347678412 S(ph)PPEHYVQETPLMFSR ddPTM_HeLa_A486_30min_R1 4 SPPEHYVQETPLMFSR 16 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(1)PPEHYVQETPLMFSR;S(1)PPEHYVQETPLMFSR;S(1)PPEHYVQETPLMFSR;S(1)PPEHYVQETPLMFSR ;;; 172.3 2.02E-12 516160000 285236.6 275682 175429.7 122295.3 251978.3 279585.8 335388 309998 220374.8 402860.4 TRUE FALSE FALSE 265242.9873 253835.9543 243360.778 284709.6389 220372.832 245093.3466 251470.375 239418.2226 239477.0651 301981.5337 0.878341745 0.840567803 0.805879668 0.942804798 0.729755987 0.811617001 0.83273428 0.79282405 0.793018905 1 18.20410081 -1.000052319 0.812280987 0.827158864 14.40174313 0.006418447 0.074707395 2220.223445 7.280227608 0.024946351 55522.9548 0.099987954 1.000052319 13.57458427 S(ph)PPGAGGSPPGAAVAPSALQLSPAAAAAAAHR ddPTM_HeLa_A485_30min_R1 1 SPPGAGGSPPGAAVAPSALQLSPAAAAAAAHR 32 0 P78415 P78415 IRX3 Iroquois-class homeodomain protein IRX-3 1 0 S(1)PPGAGGSPPGAAVAPSALQLSPAAAAAAAHR 191.62 2.02E-21 156380000 25606 28207 31486 28284 24992 29757 29782 26754 31998 38155 TRUE FALSE FALSE 31301.96636 31505.56328 43133.98164 29829.0833 22503.70873 31315.03051 23418.8324 20192.53955 38419.7051 28643.66069 1.092806073 1.099913996 1.5058823 1.041385165 0.785643601 1.093262165 0.81759216 0.704956666 1.341298709 1 14.80592826 -5.512064107 24.46606172 0.93959542 1.228582403 0.275950816 0.198533378 477.1849786 1079541.216 0.05596796 0.07743572 3.08E-06 5.512064107 0.288986983 S(ph)PPGPHGLGPLLCPPGAFLPGLK ddPTM_HeLa_A485_30min_R1 2 SPPGPHGLGPLLCPPGAFLPGLK 23 0 Q9UM47 Q9UM47 NOTCH3 Neurogenic locus notch homolog protein 3;Notch 3 extracellular truncation;Notch 3 intracellular domain 1 0 S(1)PPGPHGLGPLLCPPGAFLPGLK;S(1)PPGPHGLGPLLCPPGAFLPGLK ; 139.79 2.78E-07 212610000 173520 122294 86048 194205 80572 122402 154162 98840 117906 342702 TRUE FALSE FALSE 212118.9254 136595.2195 117880.736 204813.9274 72549.96877 128810.7795 121224.0293 74599.33502 141568.6527 257272.6984 0.824490615 0.530935542 0.458193725 0.796096627 0.281996377 0.500677998 0.471188859 0.289962112 0.55026691 1 17.97293884 -8.046219289 22.82027094 1.000000003 0.510623258 0.418115093 0.169051702 3990.436821 1970232.044 0.162192554 0.041877937 8.99E-09 8.046219289 -0.489376746 S(ph)PPGPHGLGPLLCPPGAFLPGLK ddPTM_HeLa_A486_30min_R1 2 SPPGPHGLGPLLCPPGAFLPGLK 23 0 Q9UM47 Q9UM47 NOTCH3 Neurogenic locus notch homolog protein 3;Notch 3 extracellular truncation;Notch 3 intracellular domain 1 0 S(1)PPGPHGLGPLLCPPGAFLPGLK;S(1)PPGPHGLGPLLCPPGAFLPGLK ; 85.807 0.001962 199760000 128948 179962 106508 53523 148522 179523 144739 128202 197204 247200 TRUE FALSE FALSE 119909.4111 165701.1557 147750.75 124604.2489 129892.9858 157375.2775 108523.7713 99013.20323 214297.8015 185299.511 0.64711132 0.894234177 0.797361791 0.672447802 0.700989361 0.849302174 0.585666798 0.534341417 1.156494156 1 17.49949955 -7.771931632 24.99967744 1.078247266 0.718145549 0.632783055 0.112023631 155.9489889 371563.8236 0.107436181 0.028938079 1.69E-08 7.771931632 -0.360101717 S(ph)PPGSGASTPVGPWDQAVQR ddPTM_HeLa_A486_30min_R1 2 SPPGSGASTPVGPWDQAVQR 20 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 S(0.999)PPGS(0.001)GASTPVGPWDQAVQR;S(0.999)PPGS(0.001)GASTPVGPWDQAVQR ; 119.76 7.44E-06 885770000 113215 235205 191488 82973 268575 195336 254584 249857 170299 170809 TRUE FALSE FALSE 105279.2131 216566.4992 265637.2818 193165.3372 234887.8191 171237.4304 190884.3905 192970.0154 185060.6544 128037.3146 0.822254149 1.691432688 2.074686451 1.508664391 1.834526285 1.337402544 1.490849687 1.507138884 1.445365009 1 16.9662048 -6.294623866 24.57315058 1.396266039 1.614970967 0.099447593 0.330035092 1379.954231 1021853.022 0.116975793 0.103170049 5.07E-07 6.294623866 0.218704929 S(ph)PPHHSGFQQYQQADASK ddPTM_HeLa_A486_30min_R1 1 SPPHHSGFQQYQQADASK 18 0 Q92540;Q92540-5;B1ALB4;E9PD50;Q92540-2;Q92540-4 Q92540 SMG7 Protein SMG7 1 0 S(0.548)PPHHS(0.447)GFQQY(0.006)QQADASK 126.88 7.51E-06 74191000 96826 110270 86756 12086 100190 71274 70692 75203 91494 40476 TRUE FALSE FALSE 90038.99741 101531.8036 120350.2466 28136.81879 87623.23597 62480.93854 53004.1139 58080.91857 99424.77359 30340.54615 2.967612942 3.346406591 3.966647338 0.927366919 2.887991388 2.059321485 1.746972966 1.914300365 3.276960576 1 14.88895943 -5.246163703 24.99975945 2.043638596 3.418840738 0.45927506 0.719943767 749.011128 1225809.625 0.187392622 0.322981348 5.67E-06 5.246163703 1.375202143 S(ph)PPKADEKER ddPTM_HeLa_A485_30min_R1 3 SPPKADEKER 10 2 E9PG73;Q13427;C9JM79;Q13427-2 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(1)PPKADEKER;S(1)PPKADEKER;S(1)PPKADEKER ;; 79.466 0.0035654 967010000 618750 517550 352300 1130610 795960 838980 1527620 1672790 570570 1653520 TRUE FALSE FALSE 756388.8028 578072.9704 482630.4304 1192372.361 716711.4276 882907.6955 1201231.507 1262535.63 685078.1654 1241327.895 0.60933844 0.465689181 0.388801728 0.960561965 0.577374786 0.711260658 0.967698795 1.017084716 0.55189138 1 20.24345282 -5.628752706 0.784143045 0.872256086 0.477033592 0.358461498 0.18281014 0.822927539 1.057015218 0.098381284 0.201695118 2.35E-06 5.628752706 -0.395222494 S(ph)PPKADEKER ddPTM_HeLa_A486_30min_R1 2 SPPKADEKER 10 2 E9PG73;Q13427;C9JM79;Q13427-2 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(1)PPKADEKER;S(1)PPKADEKER ; 80.371 0.0033087 485020000 548480 354240 197948 523230 426410 707000 974210 768530 384470 1262480 TRUE FALSE FALSE 510034.3844 326168.7323 274598.7668 1218105.883 372925.6817 619777.5282 730452.3539 593552.4959 417796.1692 946346.7906 0.538950826 0.344660895 0.290167167 1.287166496 0.394068734 0.654915866 0.77186541 0.627204004 0.441483157 1 19.85200943 -14 0.053300235 2.214011644 1.69E-09 0.151667004 0.27410549 1047.091749 4.10250602 185.043052 37.47106821 1.00E-14 14 -2.214011642 S(ph)PPKEYIDEEGVR ddPTM_HeLa_A485_30min_R1 2 SPPKEYIDEEGVR 13 1 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 S(1)PPKEYIDEEGVR;S(1)PPKEYIDEEGVR ; 93.152 0.00066333 264750000 311110 231220 257690 547550 456260 263000 413370 337740 302860 707600 TRUE FALSE FALSE 380315.3462 258259.1677 353020.2544 577461.27 410833.1524 276770.2733 325050.1226 254908.7354 363641.224 531208.3424 0.715943851 0.486173027 0.664560825 1.087071162 0.773393638 0.521020193 0.611907037 0.479865836 0.684554806 1 19.01891828 -6.235663867 24.30989473 0.623988505 0.745512927 0.031973149 0.1920148 1522.601528 1436025.017 0.065531661 0.065506907 5.81E-07 6.235663867 0.121524421 S(ph)PPKEYIDEEGVR ddPTM_HeLa_A486_30min_R1 4 SPPKEYIDEEGVR 13 1 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 S(1)PPKEYIDEEGVR;S(1)PPKEYIDEEGVR;S(1)PPKEYIDEEGVR;S(1)PPKEYIDEEGVR ;;; 122.31 2.36E-05 796350000 439098 743800 412775 408025 766850 879420 1032600 979150 604560 880510 TRUE FALSE FALSE 408319.4977 684858.5791 572612.5345 949902.8204 670664.5224 770926.1017 774232.5583 756218.9197 656963.7476 660024.5648 0.61864288 1.037625894 0.867562459 1.439193132 1.016120548 1.168026378 1.173035974 1.145743598 0.995362571 1 19.33216019 -3.913380533 1.205398232 1.127879524 1.06E-10 0.506168122 0.143277184 2.436504551 1.728800836 0.040736071 4.191887433 0.000122073 3.913380533 -1.127879524 S(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A485_30min_R1 4 SPPKVPIVIQDDSLPAGPPPQIR 23 1 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR ;;; 265.23 8.83E-62 2044830000 795063 606311 519925 1223200 777366 629283 918910 709687 665286 1494730 TRUE FALSE FALSE 971922.0214 677213.7972 712266.8934 1290020.319 699968.7115 662231.2848 722577.3717 535635.1505 798802.7978 1122121.319 0.866147006 0.603512103 0.634750344 1.149626423 0.623790583 0.590160149 0.643938725 0.477341568 0.71186848 1 20.09779723 -4.234794674 21.98644112 0.700767921 0.866148112 0.047439297 0.193974876 5132.644455 4234960.121 0.048836703 2.908055576 5.82E-05 4.234794674 0.165380191 S(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A486_30min_R1 4 SPPKVPIVIQDDSLPAGPPPQIR 23 1 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR ;;; 227.25 1.27E-38 2730890000 803321 918366 441516 402322 649749 995698 1029720 905280 679414 1256860 TRUE FALSE FALSE 747012.3463 845591.3335 612482.8194 936625.9482 568251.4218 872858.9043 772073.1647 699167.5061 738306.1526 942134.0752 0.792893884 0.897527598 0.650101547 0.994153564 0.603153454 0.926469944 0.819493939 0.742110411 0.783652956 1 19.84557286 -11.07977788 2.587791189 1.318816622 0.801814186 0.217053695 0.113341907 9021065.991 3836098.407 16969697.5 0.025762589 8.32E-12 11.07977788 -0.517002436 S(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_A485_30min_R1 3 SPPLIGSESAYESFLSADDK 20 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.979)PPLIGS(0.018)ES(0.003)AYESFLSADDK;S(0.975)PPLIGS(0.022)ES(0.003)AYESFLSADDK;S(0.97)PPLIGS(0.026)ES(0.003)AYESFLSADDK ;; 139.08 1.10E-09 90201000 228893 148523 113739 347830 143690 132053 201042 109786 143668 404990 TRUE FALSE FALSE 279809.4582 165891.4729 155815.7892 366831.0721 129383.7191 138967.0909 158087.7343 82860.81136 172500.8498 304033.4463 0.920324595 0.545635603 0.512495553 1.206548413 0.425557519 0.4570783 0.519968235 0.272538474 0.567374583 1 18.21387052 -4.256258717 23.2972279 0.591118013 0.920324948 0.103647906 0.265835495 487.4351322 2191781.268 0.066669272 0.532349591 5.54E-05 4.256258717 0.329206935 S(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_A486_30min_R1 3 SPPLIGSESAYESFLSADDK 20 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.978)PPLIGS(0.019)ES(0.003)AYESFLSADDK;S(0.983)PPLIGS(0.016)ES(0.002)AYESFLSADDK;S(0.993)PPLIGS(0.006)ES(0.001)AYESFLSADDK ;; 206.01 1.40E-26 142644000 298586 307549 130386 115865 178333 338199 317115 270379 266318 426040 TRUE FALSE FALSE 277656.6633 283177.6972 180874.9511 269739.5755 155964.8123 296475.4459 237769.4729 208819.604 289402.6587 319356.8109 0.869424586 0.886712566 0.566372612 0.844633859 0.488371649 0.928351724 0.744526075 0.65387553 0.906204749 1 18.28480969 -7.954507619 5.412850416 0.999286241 0.747479481 0.278736519 0.136139313 0.203075318 12.98536029 0.126224354 0.032845341 1.11E-08 7.954507619 -0.25180676 S(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_A485_30min_R1 4 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(1)PPLIGSESAYESFLSADDKASGR;S(0.999)PPLIGSESAYESFLSADDKASGR;S(1)PPLIGSESAYESFLSADDKASGR;S(1)PPLIGSESAYESFLSADDKASGR ;;; 167.22 2.14E-14 2037853000 486192 431103 343644 512178 481863 491706 697096 577740 448355 672984 TRUE FALSE FALSE 594343.7331 481516.7458 470772.2158 540156.9872 433887.0278 517450.9658 548155.7448 436048.3591 538335.7359 505221.4742 1.176402357 0.953080521 0.931813551 1.069148908 0.858805593 1.024206199 1.084981088 0.863083581 1.06554405 1 18.94655644 -4.25639449 24.51400069 0.980750917 1.176402465 0.357992942 0.077462043 432.8134838 2103024.517 0.018185518 0.14700662 5.54E-05 4.25639449 0.195651548 S(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_A486_30min_R1 3 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.999)PPLIGSESAYESFLSADDKASGR;S(1)PPLIGSESAYESFLSADDKASGR;S(0.998)PPLIGS(0.001)ESAYESFLSADDKASGR ;; 110.75 0.00012772 1147429000 248064 245065 133214 85443 202804 231978 255652 242565 200043 314008 TRUE FALSE FALSE 230675.9946 225645.1569 184798.0284 198915.6221 177366.4312 203358.9129 191685.1656 187338.2447 217382.8883 235378.353 0.980022129 0.95864872 0.785110551 0.845088852 0.753537566 0.86396608 0.814370409 0.795902607 0.923546646 1 17.84462212 -4.689297919 7.125916107 0.836469523 0.972432499 0.326021343 0.068540101 0.212609132 17.23840761 0.016222183 0.043321982 2.05E-05 4.689297919 0.135962975 S(ph)PPLLESPDATR ddPTM_HeLa_A485_30min_R1 1 SPPLLESPDATR 12 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 S(0.847)PPLLES(0.153)PDATR 100.07 0.0010739 167490000 168630 236230 246070 95679 211530 212150 172490 213790 269880 123140 TRUE FALSE FALSE 206141.1617 263855.0436 337101.5328 100905.7015 190469.3305 223257.846 135636.1024 161357.6673 324042.4405 92443.46422 2.229916019 2.854231457 3.64656967 1.091539595 2.060387201 2.415074422 1.467233011 1.745474043 3.505303952 1 16.4962837 -5.257612722 24.98385197 1.939300232 2.904638232 0.277831175 0.745858159 455.1943855 2971904.565 0.201334717 0.332508121 5.53E-06 5.257612722 0.965337999 S(ph)PPLMAK ddPTM_HeLa_A485_30min_R1 3 SPPLMAK 7 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(1)PPLMAK;S(1)PPLMAK;S(1)PPLMAK ;; 77.732 0.014634 2194680000 2252950 2116020 1741050 2690810 2203550 2029320 2628770 2302790 1972510 3184180 TRUE FALSE FALSE 2754110.955 2363470.132 2385136.846 2837802.137 1984156.825 2135572.057 2067111.814 1738027.142 2368374.664 2390422.526 1.152143993 0.988724841 0.997788809 1.187155034 0.830044397 0.893386853 0.864747463 0.727079469 0.990776584 1 21.18883422 -5.775889578 24.99994081 0.870165876 1.068853704 0.513914426 0.092983472 184.6238898 319412.1561 0.027916748 0.031795028 1.68E-06 5.775889578 0.198687827 S(ph)PPLMAK ddPTM_HeLa_A486_30min_R1 3 SPPLMAK 7 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(1)PPLMAK;S(1)PPLMAK;S(1)PPLMAK ;; 89.698 0.0068896 3877930000 2538520 2778130 1514480 822190 2002920 2472200 2602370 2432660 2131070 2854950 TRUE FALSE FALSE 2360582.857 2557980.861 2100927.215 1914099.871 1751695.097 2167205.099 1951229.501 1878796.423 2315792.863 2140051.937 1.103049331 1.19528915 0.981717863 0.894417485 0.818529245 1.012688086 0.911767358 0.877920947 1.082119935 1 21.02921438 -4.871796011 4.896695719 0.934293007 1.147731686 0.540564743 0.074640768 0.138226957 5.290522021 0.019355388 0.042596737 1.34E-05 4.871796011 0.21343868 S(ph)PPLPAVIR ddPTM_HeLa_A485_30min_R1 7 SPPLPAVIR 9 0 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR ;;;;;; 95.523 0.0026633 8650827000 377973.7 386646.3 371396.6 332123.4 526952.7 342940.5 449279 509930.7 362854.7 447829.6 TRUE FALSE FALSE 462052.6456 431861.2214 508791.6574 350266.4604 474487.4389 360896.3343 353286.8714 384869.3963 435676.31 336193.9224 1.374363469 1.28455987 1.513387434 1.041858395 1.411350436 1.073476676 1.050842528 1.14478392 1.295907751 1 18.35893412 -5.670760409 1.014203676 1.126299697 1.373928444 0.340474377 0.138848676 0.657612704 1.429518139 0.059982078 0.103503995 2.13E-06 5.670760409 0.247628747 S(ph)PPLPAVIR ddPTM_HeLa_A486_30min_R1 7 SPPLPAVIR 9 0 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR ;;;;;; 111.31 0.0008789 10474870000 191343.6 215354.9 144079.3 47353.7 212427.7 195231.8 234508.4 231135.3 173984.4 205226.7 TRUE FALSE FALSE 177931.4017 198289.3934 199870.6635 110241.8067 185783.0371 171146.0855 175831.9179 178510.8378 189065.5079 153836.5985 1.156625949 1.288961114 1.299240008 0.716616252 1.207664748 1.112518654 1.142978457 1.160392517 1.229002134 1 17.23103924 S(ph)PPLVK ddPTM_HeLa_A486_30min_R1 1 SPPLVK 6 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(1)PPLVK 65.252 0.033925 417770000 847220 838460 406510 256640 619540 810670 825490 754220 664150 945860 TRUE FALSE FALSE 787834.253 772017.376 563921.5587 597470.8899 541831.5162 710657.7777 618943.6709 582500.5705 721719.0567 709010.4995 1.111174311 1.088865929 0.795364186 0.842682711 0.764208029 1.002323348 0.872968272 0.821568328 1.017924357 1 19.43544747 -4.743961726 23.39762486 0.880531041 1.100020684 0.486740446 0.08601319 88.9300348 119047.6191 0.021409138 0.056280837 1.80E-05 4.743961726 0.219489643 S(ph)PPPETIK ddPTM_HeLa_A485_30min_R1 4 SPPPETIK 8 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(1)PPPETIK;S(1)PPPETIK;S(1)PPPETIK;S(1)PPPETIK ;;; 81.338 0.0081524 2334410000 1558170 1488440 1232350 1865810 1956350 1766970 2260340 2150700 1507190 2468460 TRUE FALSE FALSE 1904779.541 1662500.11 1688247.547 1967734.476 1761568.925 1859485.817 1777399.894 1623237.453 1809669.208 1853118.351 1.027877977 0.8971365 0.911030613 1.061850408 0.950597097 1.003436082 0.959139978 0.875949155 0.976553498 1 20.82152359 -9.691826837 12.43510652 1.000000713 0.960289816 0.037962837 0.055346409 0 0 0.053650043 0.013012047 2.03E-10 9.691826837 -0.039710897 S(ph)PPPETIK ddPTM_HeLa_A486_30min_R1 3 SPPPETIK 8 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(1)PPPETIK;S(1)PPPETIK;S(1)PPPETIK ;; 82.749 0.0070748 1777200000 1658400 1765670 1089580 727020 1748560 1829760 2147860 2076210 1447800 2240970 TRUE FALSE FALSE 1542154.724 1625751.879 1511494.556 1692539.302 1529239.3 1604022.815 1610442.71 1603502.306 1573296.47 1679816.526 0.918049501 0.967815148 0.899797408 1.007573908 0.910360909 0.954879768 0.958701552 0.954569908 0.93658828 1 20.67987224 -14 0.245581322 1.31285984 0.9414915 0.234759954 0.02971403 256.4721174 2.553062982 40.22874355 0.041485615 1.00E-14 14 -0.37136834 S(ph)PPPGMGLNQNR ddPTM_HeLa_A485_30min_R1 1 SPPPGMGLNQNR 12 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 S(1)PPPGMGLNQNR 74.78 0.0093874 401430000 27719 36872 22503 36037 35572 31315 46975 53041 18962 50403 TRUE FALSE FALSE 33884.99592 41183.85966 30827.79613 38005.61006 32030.32678 32954.60498 36938.4075 40032.61158 22767.49947 37838.4597 0.895517317 1.088412689 0.814721222 1.004417473 0.846501867 0.870928818 0.976213297 1.057987347 0.601702597 1 15.20756574 -4.764772563 24.99984902 0.902623819 0.991964984 0.07725467 0.130551273 216.7960567 1626086.388 0.032169534 0.071673928 1.72E-05 4.764772563 0.089341164 S(ph)PPPGMGLNQNR ddPTM_HeLa_A486_30min_R1 1 SPPPGMGLNQNR 12 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 S(1)PPPGMGLNQNR 73.082 0.010419 365920000 23716 29675 25290 15336 30750 27360 29489 32924 22074 34869 TRUE FALSE FALSE 22053.63087 27323.44493 35082.96529 35702.98304 26893.04827 23984.60138 22110.5403 25427.92393 23987.39209 26137.57544 0.843751974 1.045370294 1.342242526 1.365963845 1.028903707 0.917629159 0.845929277 0.972849375 0.91773593 1 14.6738377 -5.995072173 24.83327368 0.929319021 1.160904165 0.342105991 0.14247176 150.9469647 760671.1379 0.0484184 0.054712509 1.01E-06 5.995072173 0.231585144 S(ph)PPPGPDGHAK ddPTM_HeLa_A485_30min_R1 4 SPPPGPDGHAK 11 0 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 S(1)PPPGPDGHAK;S(1)PPPGPDGHAK;S(1)PPPGPDGHAK;S(1)PPPGPDGHAK ;;; 143.94 7.42E-07 1629910000 1770600 1377790 1745050 2711960 2711210 1578920 2035250 1740680 1925810 3488450 TRUE FALSE FALSE 2164463.862 1538910.555 2390616.613 2860107.508 2441272.413 1661589.81 1600402.211 1313775.501 2312302.402 2618843.615 0.826496034 0.587629802 0.912851993 1.092126117 0.932194805 0.634474621 0.611110263 0.501662449 0.882947874 1 21.32049848 -6.26330487 24.92525372 0.687709893 0.869250233 0.123926261 0.17766061 288.4971463 3854652.8 0.06348613 0.058860093 5.45E-07 6.26330487 0.18154034 S(ph)PPPGPDGHAK ddPTM_HeLa_A486_30min_R1 5 SPPPGPDGHAK 11 0 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 S(1)PPPGPDGHAK;S(1)PPPGPDGHAK;S(1)PPPGPDGHAK;S(1)PPPGPDGHAK;S(1)PPPGPDGHAK ;;;; 181.67 1.37E-10 2635570000 2443856 3644730 2502007 1500978 3917850 3901400 4285350 4251740 3061616 3556159 TRUE FALSE FALSE 2272554.314 3355908.321 3470851.116 3494352.639 3426436.72 3420084.935 3213110.104 3283711.617 3326999.34 2665673.64 0.852525336 1.258934429 1.302054034 1.310870388 1.285392431 1.283009624 1.205365149 1.231850579 1.248089522 1 21.34606873 -4.2606392 24.81313976 1.249851278 0.852525202 0.63981408 0.085805257 34.14603691 1058639.402 0.01980692 0.115309645 5.49E-05 4.2606392 -0.397326076 S(ph)PPPGPDGHAKK ddPTM_HeLa_A485_30min_R1 1 SPPPGPDGHAKK 12 1 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 S(1)PPPGPDGHAKK 166.09 1.83E-10 144680000 158750 132150 100470 199140 235230 158110 281030 287880 158950 266750 TRUE FALSE FALSE 194063.3898 147603.7929 137638.0339 210018.514 211809.6753 166388.3951 220985.6447 217276.9786 190849.807 200254.1342 0.96908556 0.737082376 0.687316816 1.048759941 1.057704382 0.830886193 1.103526005 1.085006207 0.953038037 1 17.6114725 -5.272625756 24.945405 1.013078552 0.791753662 0.491282544 0.099464338 561.0184815 1251059.39 0.028313882 0.042428242 5.34E-06 5.272625756 -0.221324891 S(ph)PPPGPDGHAKK ddPTM_HeLa_A486_30min_R1 2 SPPPGPDGHAKK 12 1 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 S(1)PPPGPDGHAKK;S(1)PPPGPDGHAKK ; 189.1 3.24E-13 236310000 350540 398880 266580 317570 554830 551930 725850 676750 332780 619560 TRUE FALSE FALSE 325968.9562 367271.2961 369806.9153 739319.0091 485238.0478 483838.4882 544234.6527 522668.7983 361625.6383 464418.1433 0.701886782 0.790820301 0.796280078 1.591925336 1.044830084 1.041816508 1.171863461 1.125427173 0.778663891 1 18.82506481 -5.037039545 24.96061978 1.116758576 0.75815227 0.402476013 0.192836395 513.2984911 345906.849 0.051953355 0.090019967 9.18E-06 5.037039545 -0.358606306 S(ph)PPPKATEEK ddPTM_HeLa_A485_30min_R1 1 SPPPKATEEK 10 1 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 S(1)PPPKATEEK 48.998 0.012336 0 600170 517360 425510 793280 575930 540900 689220 662330 524560 945300 TRUE FALSE FALSE 733675.7459 577860.7516 582923.8559 836614.8777 518588.387 569220.6876 541962.5166 499892.529 629834.3805 709654.107 1.033849785 0.81428508 0.821419689 1.178905145 0.730762187 0.802110045 0.763699542 0.704417158 0.887523054 1 19.43675649 S(ph)PPPKATEEK ddPTM_HeLa_A486_30min_R1 1 SPPPKATEEK 10 1 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 S(0.999)PPPKAT(0.001)EEK 48.704 0.025278 420020000 647940 532140 259180 245540 378030 724820 723340 558440 464190 1044100 TRUE FALSE FALSE 602522.752 489971.2884 359541.4371 571629.5289 330613.9524 635399.0778 542352.6813 431295.4027 504426.3629 782650.564 0.769848997 0.626040932 0.459389482 0.730376435 0.422428562 0.811855389 0.692969131 0.5510702 0.644510317 1 19.57800879 -10.77216448 2.207835687 1.116192388 0.62998816 0.452721882 0.120548977 3285607.061 1941279.056 2059129.454 0.030989045 1.69E-11 10.77216448 -0.486204228 S(ph)PPPKATEEKK ddPTM_HeLa_A485_30min_R1 1 SPPPKATEEKK 11 2 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 S(1)PPPKATEEKK 67.964 0.0066547 331440000 439710 206180 88125 638510 205690 429850 497720 560380 237280 818460 TRUE FALSE FALSE 537521.9725 230290.9575 120726.1047 673390.1845 185210.7814 452356.2813 391378.056 422945.9264 284899.9195 614432.9846 0.874826036 0.3748024 0.196483763 1.095953833 0.301433657 0.736217444 0.636974358 0.688351597 0.463679403 1 19.22889614 -11.30371166 2.156235106 2.842040395 0.592246598 0.179151547 0.258949493 12748225 1776971.281 114314405.7 0.063847248 4.97E-12 11.30371166 -2.249793797 S(ph)PPPPPPPPSDEALLHCVLEGK ddPTM_HeLa_A485_30min_R1 1 SPPPPPPPPSDEALLHCVLEGK 22 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 0 S(1)PPPPPPPPSDEALLHCVLEGK 144.76 1.43E-09 38619000 29411 30499 15582 26336 28997 26737 32340 24078 21013 34422 TRUE FALSE FALSE 35953.37548 34065.59274 21346.43022 27774.66899 26109.95687 28136.90798 25430.29481 18172.83275 25230.11636 25841.22889 1.391318332 1.318265199 0.826060955 1.074819975 1.010399195 1.088837845 0.984097734 0.703249556 0.976351259 1 14.65738706 -4.685968554 6.499406074 0.959467286 1.367011125 0.677227712 0.10975454 0.121960975 8.246946895 0.029593121 0.079473291 2.06E-05 4.685968554 0.407543839 S(ph)PPPPPPPPSDEALLHCVLEGK ddPTM_HeLa_A486_30min_R1 2 SPPPPPPPPSDEALLHCVLEGK 22 0 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 0 S(1)PPPPPPPPSDEALLHCVLEGK;S(1)PPPPPPPPSDEALLHCVLEGK ; 159.86 6.02E-12 102254000 54654 53375 26545 13028.7 33609 47700 43767 40986 42356 68188 TRUE FALSE FALSE 50823.03683 49145.37061 36823.9349 30331.47203 29393.44583 41815.25898 32816.03368 31654.38252 46027.45218 51113.28097 0.994321551 0.961499041 0.720437706 0.593416651 0.575064744 0.818089901 0.642025576 0.619298584 0.900498878 1 15.64141058 -4.752395303 5.166794517 0.708123887 0.984224585 0.338470353 0.133251345 0.160593298 12.19881642 0.033323409 0.083852421 1.77E-05 4.752395303 0.276100698 S(ph)PPPPTHSTQLGAPSR ddPTM_HeLa_A485_30min_R1 1 SPPPPTHSTQLGAPSR 16 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 S(0.972)PPPPT(0.026)HS(0.002)TQLGAPSR 65.954 0.0054259 0 92617 127830 121270 92220 157810 146250 189720 229170 135940 169660 TRUE FALSE FALSE 113219.3321 142778.6065 166132.8195 97257.74509 142097.8823 153907.4239 149184.7721 172965.6982 163221.9111 127366.8844 0.888922837 1.121002584 1.30436432 0.763603079 1.115657991 1.208378651 1.171299533 1.358011535 1.281509805 1 16.9586307 -6.145899547 4.08955288 1.224169668 1.036946672 0.218852347 0.15859352 0.362522768 10.3804222 0.054096167 0.054205438 7.15E-07 6.145899547 -0.187222996 S(ph)PPPPTHSTQLGAPSR ddPTM_HeLa_A486_30min_R1 1 SPPPPTHSTQLGAPSR 16 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 S(1)PPPPTHSTQLGAPSR 139.7 1.85E-06 468230000 129750 146860 182770 24129 201600 103860 118490 120210 148710 59944 TRUE FALSE FALSE 120655.195 135222.2787 253543.4388 56173.53141 176313.4482 91046.80917 88842.54874 92840.80717 161600.3025 44933.63223 2.685186775 3.009377877 5.642620598 1.25014446 3.923863694 2.02625082 1.977194906 2.066176326 3.596421979 1 15.45550807 -5.909995618 1.236870691 2.215120878 3.492374992 0.166335774 1.205208851 0.851183849 2.73886646 0.506462386 0.630092818 1.23E-06 5.909995618 1.277254114 S(ph)PPPVSK ddPTM_HeLa_A485_30min_R1 2 SPPPVSK 7 0 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(1)PPPVSK;S(1)PPPVSK ; 77.674 0.014683 6870000000 2320620 2566320 1557210 2249570 1616150 2206270 2524250 2547080 1776710 2664630 TRUE FALSE FALSE 2836833.913 2866428.8 2133286.78 2372458.313 1455240.431 2321786.886 1984923.366 1922404.636 2133279.4 2000386.78 1.418142702 1.432937284 1.066437152 1.185999796 0.727479528 1.160668981 0.992269788 0.961016467 1.066433463 1 20.93184755 -4.829338057 1.951984972 1.002932847 1.459281014 0.638279699 0.121046684 0.211363766 1.538183703 0.033031962 0.116064769 1.48E-05 4.829338057 0.456348167 S(ph)PPPVSK ddPTM_HeLa_A486_30min_R1 3 SPPPVSK 7 0 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(1)PPPVSK;S(1)PPPVSK;S(1)PPPVSK ;; 67.032 0.024027 11314700000 16003100 13730100 6909500 3504210 8068700 13133000 12186900 9880500 11370900 18218100 TRUE FALSE FALSE 14881365.33 12642076.87 9585043.443 8157977.973 7056648.408 11512783.99 9137608.72 7630925.84 12356538.77 13656169.18 1.089717412 0.925741085 0.701883765 0.597384073 0.516737038 0.84304638 0.669119473 0.558789639 0.904831992 1 23.7030495 -4.584483543 2.772991156 0.697636071 1.077868389 0.382057131 0.148133164 0.256672191 3.708580575 0.037851611 0.158519096 2.60E-05 4.584483543 0.380232318 S(ph)PPRASYVAPLTAQPATYR ddPTM_HeLa_A485_30min_R1 4 SPPRASYVAPLTAQPATYR 19 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 S(0.999)PPRAS(0.001)YVAPLTAQPATYR;S(0.998)PPRAS(0.002)YVAPLTAQPATYR;S(0.995)PPRAS(0.005)YVAPLTAQPATYR;S(0.993)PPRAS(0.007)YVAPLTAQPATYR ;;; 170.27 6.08E-13 7510330000 115399 368945 190046 57485.3 266338 376240 418090 906800 170635 122785 TRUE FALSE FALSE 141069.1094 412089.9084 260351.9239 60625.57638 239820.4536 395939.3446 328761.656 684405.8782 204879.8793 92176.95919 1.530416176 4.470638997 2.824479416 0.657708574 2.601739693 4.295426407 3.566635946 7.424912735 2.222679953 1 16.49211856 -6.232822861 7.170168909 4.095604667 2.451378245 0.092689386 1.81096015 0.405961168 80.41013202 0.593133601 0.582865527 5.85E-07 6.232822861 -1.644226422 S(ph)PPRASYVAPLTAQPATYR ddPTM_HeLa_A486_30min_R1 2 SPPRASYVAPLTAQPATYR 19 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 S(0.969)PPRAS(0.031)YVAPLTAQPATYR;S(0.993)PPRAS(0.007)YVAPLTAQPATYR ; 145.6 1.07E-08 1832490000 192683 98795 120963 52347 239579 79943 171433 205123 57297 178634 TRUE FALSE FALSE 179176.9167 90966.12439 167803.1131 121866.4615 209528.7678 70080.44546 128538.6502 158420.9707 62263.55009 133902.8837 1.338110964 0.679344028 1.253170271 0.910110807 1.564781594 0.523367709 0.959939373 1.183103503 0.46499036 1 17.0308275 -6.279157271 24.98780409 0.846077908 1.115509955 0.218929823 0.300397829 1534.881307 2164659.306 0.101625069 0.089818393 5.26E-07 6.279157271 0.269432047 S(ph)PPREGSQGELTPANSQSR ddPTM_HeLa_A485_30min_R1 2 SPPREGSQGELTPANSQSR 19 1 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 S(0.671)PPREGS(0.329)QGELTPANSQSR;S(0.856)PPREGS(0.144)QGELTPANSQSR ; 89.272 0.00031397 2965400000 0 29983 61397 13705 52129 36591 42281 49323 73661 25403 TRUE FALSE FALSE 0 33489.25103 84110.30524 14453.66945 46938.85372 38506.84818 33247.31895 37226.45691 88444.08704 19070.49961 0 1.756076229 4.410493011 0.757907226 2.461333195 2.019184026 1.743390033 1.952044135 4.637743576 1 14.21905502 -4.333270408 4.255455477 2.355566169 2.68E-08 0.255822839 1.207637158 0.266389283 8.471799957 0.290704499 1.525793749 4.64E-05 4.333270408 -2.355566142 S(ph)PPREGSQGELTPANSQSR ddPTM_HeLa_A486_30min_R1 3 SPPREGSQGELTPANSQSR 19 1 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 S(0.983)PPREGS(0.017)QGELTPANSQSR;S(0.996)PPREGS(0.004)QGELTPANSQSR;S(0.999)PPREGS(0.001)QGELTPANSQSR ;; 109.28 2.88E-05 3290220000 90243 146223 93023 45586 133060 100434 131269 117165 101890 118538 TRUE FALSE FALSE 83917.43172 134635.7569 129043.9968 106126.5118 116370.3741 88043.47422 98424.10778 90489.08719 110721.9072 88855.31325 0.944427842 1.515224605 1.452293533 1.194374404 1.309661401 0.99086336 1.107689616 1.018386902 1.246092138 1 16.43917043 -6.248698787 24.00365965 1.075948288 1.300546575 0.301229969 0.159237971 551.835283 1039674.081 0.051879269 0.051512849 5.64E-07 6.248698787 0.224598287 S(ph)PPRPPR ddPTM_HeLa_A485_30min_R1 4 SPPRPPR 7 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;Q9UQ88-9;Q9UKB5;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A;AJAP1 Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A;Adherens junction-associated protein 1 1 0 S(1)PPRPPR;S(1)PPRPPR;S(1)PPRPPR;S(1)PPRPPR ;;; 95.502 0.0027038 19555040000 131321 200787 215949 136032 218890 187710 243744 210069 192651 199767 TRUE FALSE FALSE 160532.9034 224267.293 295837.5215 143463.0837 197096.543 197538.2053 191666.1032 158549.2484 231314.2886 149968.7633 1.07044227 1.495426701 1.972660939 0.956619769 1.314250639 1.317195668 1.278040166 1.057215148 1.542416457 1 17.19430251 -5.290045826 24.99959528 1.223496503 1.51110203 0.220668302 0.260381984 1098.223852 959751.5797 0.072540691 0.107616586 5.13E-06 5.290045826 0.287605528 S(ph)PPRPPR ddPTM_HeLa_A486_30min_R1 2 SPPRPPR 7 1 P21127;P21127-6;P21127-9;P21127-2;P21127-8;P21127-3;A0A0D9SEN2;A0A0D9SEI3;A0A0D9SER5;P21127-10;Q9UQ88-9;Q9UKB5;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;J3KS35;E7ESP2 P21127;Q5QPR4 CDK11B;CDK11A;AJAP1 Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A;Adherens junction-associated protein 1 1 0 S(1)PPRPPR;S(1)PPRPPR ; 99.139 0.0023036 17740400000 72321 69635 70789 5548.8 83752 82690 65645 69840 45941 58301 TRUE FALSE FALSE 67251.67137 64116.86899 98200.3966 12917.88682 73247.0432 72488.54853 49219.92668 53938.9566 49923.20287 43702.05012 1.538867654 1.467136411 2.247043247 0.29558995 1.676055082 1.658699039 1.126261275 1.234243163 1.142353796 1 15.41541334 -1.000000044 0.108052023 0.810379894 3.304672317 0.124431824 0.45795226 250.7719805 1.901331833 4.48958462 93.13849023 0.09999999 1.000000044 2.494292423 S(ph)PPSLHLLEAFK ddPTM_HeLa_A485_30min_R1 2 SPPSLHLLEAFK 12 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 S(0.989)PPS(0.011)LHLLEAFK;S(0.893)PPS(0.107)LHLLEAFK ; 146.96 1.26E-07 406520000 369040 444100 370450 256851 506010 373810 469920 440170 392790 445110 TRUE FALSE FALSE 451131.6748 496033.6318 507494.8707 270882.1197 455629.8677 393382.1136 369517.7531 332217.6173 471619.3501 334152.2686 1.350078144 1.48445388 1.51875333 0.810654738 1.363539651 1.177254056 1.105836434 0.99421027 1.411390538 1 18.35014614 -5.222123604 24.99725212 1.134562257 1.454431097 0.436323647 0.170400248 497.6907656 316434.782 0.044086545 0.076358722 6.00E-06 5.222123604 0.31986884 S(ph)PPSLHLLEAFK ddPTM_HeLa_A486_30min_R1 2 SPPSLHLLEAFK 12 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 S(0.992)PPS(0.008)LHLLEAFK;S(0.989)PPS(0.011)LHLLEAFK ; 157.86 2.02E-08 380790000 923820 1020250 653410 62872 919900 844600 925300 875640 844110 598340 TRUE FALSE FALSE 859064.9886 939401.6743 906427.8509 146369.1934 804517.5643 740401.8393 693780.1532 676275.8871 917278.1344 448511.7695 1.915367772 2.094486117 2.020967815 0.326344153 1.793749059 1.650796901 1.546849381 1.507821942 2.045159563 1 18.77478632 S(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_A485_30min_R1 4 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 S(0.972)PPS(0.026)S(0.001)S(0.001)EIFTPAHEENVR;S(0.994)PPS(0.006)SSEIFTPAHEENVR;S(0.905)PPS(0.03)S(0.042)S(0.022)EIFTPAHEENVR;S(0.828)PPS(0.14)S(0.02)S(0.012)EIFTPAHEENVR ;;; 195.53 6.55E-19 3527050000 197422 294608 283409 200767 303958 248930 272534 249956 248970 335173 TRUE FALSE FALSE 241337.8428 329059.8429 388253.7827 211734.3928 273694.8743 261963.5899 214304.8845 188653.8991 298935.9953 251620.5395 0.959134112 1.30776225 1.543013076 0.841482946 1.087728668 1.041105748 0.851698693 0.749755562 1.188042899 1 17.94089017 -5.279726226 24.99817382 0.958738839 1.273749093 0.378063233 0.178669729 809.0814845 1106015.133 0.050832303 0.075551199 5.25E-06 5.279726226 0.315010254 S(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_A486_30min_R1 4 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 S(0.997)PPS(0.002)SSEIFTPAHEENVR;S(0.955)PPS(0.045)SSEIFTPAHEENVR;S(0.981)PPS(0.019)SSEIFTPAHEENVR;S(0.974)PPS(0.025)S(0.001)S(0.001)EIFTPAHEENVR ;;; 205.96 1.63E-25 3735630000 284871 338105 258031 84665 340026 283283 295617 311396 295242 323225 TRUE FALSE FALSE 264903.014 311312.3284 357947.5135 197104.3987 297376.7685 248334.4237 221650.4999 240497.9285 320833.8143 242287.3562 1.093342295 1.284888875 1.477367698 0.813515001 1.227372213 1.024958246 0.914824873 0.992614441 1.324187194 1 17.88635959 -5.255903346 24.99707949 1.043841071 1.285168531 0.321851132 0.161435324 551.0868665 2488337.616 0.043643795 0.072932445 5.55E-06 5.255903346 0.24132746 S(ph)PPSTGSTYGSSQK ddPTM_HeLa_A485_30min_R1 4 SPPSTGSTYGSSQK 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(1)PPSTGSTYGSSQK;S(0.93)PPS(0.07)TGSTYGSSQK;S(0.998)PPS(0.001)T(0.001)GSTYGSSQK;S(0.987)PPS(0.012)T(0.001)GSTYGSSQK ;;; 182.37 2.28E-17 3578850000 844930 650950 489224 958430 491713 531547 634140 436857 595345 1044330 TRUE FALSE FALSE 1032881.764 727072.94 670208.3159 1010786.604 442756.3272 559377.979 498650.8086 329717.1358 714825.2807 783997.7505 1.317455009 0.927391615 0.854859999 1.289272327 0.564741834 0.713494367 0.63603602 0.420558778 0.911769556 1 19.58048999 -5.771518706 24.99963434 0.675494513 1.067799192 0.458895713 0.204407703 179.0281626 444040.1996 0.061143897 0.07012248 1.69E-06 5.771518706 0.392304679 S(ph)PPSTGSTYGSSQK ddPTM_HeLa_A486_30min_R1 7 SPPSTGSTYGSSQK 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.996)PPS(0.002)TGS(0.001)TYGSSQK;S(0.997)PPS(0.001)T(0.001)GS(0.001)TYGSSQK;S(0.994)PPS(0.003)T(0.003)GSTYGSSQK;S(0.999)PPS(0.001)TGSTYGSSQK;S(0.933)PPS(0.054)T(0.013)GSTYGSSQK;S(0.979)PPS(0.017)T(0.004)GSTYGSSQK;S(1)PPSTGSTYGSSQK ;;;;;; 224.34 7.57E-28 5314860000 1475698 1650980 702810 340421 890724 1452516 1282712 1080917 1330328 1689775 TRUE FALSE FALSE 1372259.191 1520150.332 974956.8539 792517.2919 779001.0902 1273319.344 961763.8905 834815.7954 1445641.902 1266644.341 1.083381614 1.200139836 0.769716346 0.625682574 0.6150117 1.005269832 0.759300665 0.659076718 1.141316354 1 20.27258006 -4.764334109 24.9990501 0.799659404 1.141760787 0.353091431 0.171058293 68.31989455 590037.2722 0.044070211 0.098652923 1.72E-05 4.764334109 0.342101383 S(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_A485_30min_R1 2 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.998)PPS(0.001)TGSTYGSSQKEESAASGGAAYTK;S(0.722)PPS(0.115)T(0.115)GS(0.039)T(0.008)YGS(0.001)SQKEESAASGGAAYTK ; 169.93 3.00E-14 3890900000 512890 291190 305500 776760 424400 392250 570520 392560 446760 955400 TRUE FALSE FALSE 626980.6111 325242.1375 418517.1629 819192.4319 382145.2458 412787.6035 448623.7413 296284.0445 536420.6341 717236.3628 0.874161774 0.453465767 0.583513587 1.142151283 0.532802387 0.575525203 0.625489399 0.41309122 0.747899384 1 19.45208911 -8.016402366 24.00428003 1.000000022 0.646079376 0.21370763 0.202889229 943.776541 1381184.813 0.196895725 0.050838258 9.63E-09 8.016402366 -0.353920646 S(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_A486_30min_R1 3 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.995)PPS(0.004)T(0.001)GSTYGSSQKEESAASGGAAYTK;S(0.9)PPS(0.08)T(0.02)GSTYGSSQKEESAASGGAAYTK;S(0.989)PPS(0.009)T(0.002)GSTYGSSQKEESAASGGAAYTK ;; 218.4 1.96E-38 4078870000 577006 631640 293217 211209 445758 688335 723029 612235 539269 761765 TRUE FALSE FALSE 536560.8591 581586.546 406758.475 491705.2259 389846.8751 603415.2262 542119.4968 472842.4555 586013.2711 571014.0857 0.939663088 1.018515235 0.71234403 0.861108751 0.682727248 1.056743154 0.949397765 0.828074941 1.026267628 1 19.12316681 -6.284927722 24.99127999 0.959932683 0.846391241 0.260605084 0.107783546 1348.287526 1434554.606 0.039276163 0.034655941 5.19E-07 6.284927722 -0.113541442 S(ph)PPSTGSTYGSSQKEESAASGGAAYTKR ddPTM_HeLa_A485_30min_R1 2 SPPSTGSTYGSSQKEESAASGGAAYTKR 28 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.988)PPS(0.009)T(0.002)GSTYGSSQKEESAASGGAAYTKR;S(0.994)PPS(0.002)T(0.003)GSTYGSSQKEESAASGGAAYTKR ; 91.354 0.0010704 2070900000 875970 925390 658350 726060 999790 1184420 1452850 1605060 799170 1130730 TRUE FALSE FALSE 1070826.504 1033606.311 901901.0612 765722.8193 900247.3971 1246434.4 1142436.729 1211416.518 959556.0886 848859.8205 1.261488032 1.217640753 1.062485277 0.902060388 1.060537176 1.468363055 1.345848515 1.427110212 1.130405828 1 19.6951668 -6.236119221 24.39875951 1.305508868 1.094156713 0.21972584 0.157865406 748.0465274 720824.9822 0.05307201 0.053049705 5.81E-07 6.236119221 -0.211352156 S(ph)PPSTGSTYGSSQKEESAASGGAAYTKR ddPTM_HeLa_A486_30min_R1 3 SPPSTGSTYGSSQKEESAASGGAAYTKR 28 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.994)PPS(0.005)T(0.001)GSTYGSSQKEESAASGGAAYTKR;S(0.606)PPS(0.332)T(0.06)GS(0.001)T(0.001)YGSSQKEESAASGGAAYTKR;S(0.554)PPS(0.16)T(0.131)GS(0.047)T(0.047)Y(0.045)GS(0.008)S(0.008)QKEESAASGGAAYTKR ;; 228 5.31E-39 3944800000 2693590 2064100 996540 855490 1935130 1963060 2403480 2430510 1407330 2974430 TRUE FALSE FALSE 2504783.251 1900533.199 1382426.976 1991623.954 1692407.951 1720877.616 1802103.883 1877135.931 1529318.498 2229613.368 1.123415964 0.852404828 0.62002991 0.893259783 0.759058936 0.771827816 0.808258467 0.84191096 0.68591197 1 21.08836213 -4.294247001 4.014230866 0.790568998 1.143414312 0.484716271 0.099740575 0.157642225 5.145377661 0.023103104 0.150762838 5.08E-05 4.294247001 0.352845314 S(ph)PPSVQSLAMR ddPTM_HeLa_A486_30min_R1 1 SPPSVQSLAMR 11 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 S(0.997)PPS(0.003)VQSLAMR 59.155 0.031642 279090000 33185 36244 25001 17343 36101 31292 38281 31579 17588 26358 TRUE FALSE FALSE 30858.90287 33371.89344 34682.05675 40375.38047 31572.87595 27431.51119 28702.6889 24389.15106 19112.542 19757.78524 1.561860426 1.689050318 1.755361562 2.043517529 1.597996717 1.388389987 1.452728054 1.234407135 0.96734233 1 14.27013362 -7.010882917 0.894025267 0.976919618 1.750570331 0.808669545 0.139642231 0.270323943 0.400167426 0.128522796 0.062210692 9.75E-08 7.010882917 0.773650713 S(ph)PPSYSVLYPSSDPK ddPTM_HeLa_A485_30min_R1 1 SPPSYSVLYPSSDPK 15 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.582)PPS(0.211)Y(0.176)S(0.026)VLY(0.005)PSSDPK 61.435 0.025583 455110000 80648 82107 69697 100680 102070 84493 118830 126160 83644 149850 TRUE FALSE FALSE 98587.86937 91708.69941 95480.82063 106179.8935 91907.55241 88916.92283 93440.99975 95219.06219 100430.5836 112495.1528 0.876374376 0.815223564 0.848754975 0.943861943 0.816991223 0.790406703 0.830622453 0.846428133 0.892754764 1 16.77950331 -8.135217837 2.384050482 0.999863012 0.844936785 0.582020221 0.039573918 0.394150268 4.455833449 0.040290273 0.010975837 7.32E-09 8.135217837 -0.154926227 S(ph)PPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK ddPTM_HeLa_A485_30min_R1 2 SPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK 37 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 S(0.998)PPVQPHT(0.002)PVTISLGTAPSLQNNQPVEFNHAINYVNK;S(0.998)PPVQPHT(0.002)PVTISLGTAPSLQNNQPVEFNHAINYVNK ; 381.45 7.89E-173 10246300000 1128024 1414187 1105804 1136390 1365235 1354282 1526600 1469731 1223776 1608860 TRUE FALSE FALSE 1378949.047 1579563.868 1514886.916 1198468.108 1229307.41 1425190.111 1200429.439 1109277.168 1469376.618 1207800.811 1.141702369 1.307801629 1.254252276 0.992272979 1.017806412 1.179987709 0.993896864 0.918427242 1.216571975 1 20.20395112 -5.254248771 24.71267667 1.044458656 1.241907064 0.46428461 0.092939376 406.0172663 1395395.275 0.024950004 0.042055963 5.57E-06 5.254248771 0.197448408 S(ph)PPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK ddPTM_HeLa_A486_30min_R1 1 SPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK 37 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 S(0.995)PPVQPHT(0.005)PVTISLGTAPSLQNNQPVEFNHAINYVNK 76.478 0.00045265 57867000 36087 42249 30030 16834 45118 39562 37966 41212 40739 45839 TRUE FALSE FALSE 33557.48765 38901.03537 41658.42023 39190.40274 39458.87973 34681.24268 28466.50524 31828.92725 44270.28932 34360.61604 0.976626485 1.132140219 1.212388631 1.140561703 1.148375212 1.009331225 0.82846318 0.926320041 1.288402084 1 15.06846828 -6.300817247 6.65639581 0.993859493 1.128638235 0.164963954 0.122292833 0.362728875 47.41714071 0.044319454 0.039470927 5.00E-07 6.300817247 0.134778742 S(ph)PPYTAFLGNLPYDVTEESIK ddPTM_HeLa_A485_30min_R1 1 SPPYTAFLGNLPYDVTEESIK 21 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.426)PPY(0.336)T(0.238)AFLGNLPYDVTEESIK 121.44 8.54E-06 24712000 13035 8976.2 7822.3 17003 9935.1 9192.4 12627 8693.9 8884.3 19327 TRUE FALSE FALSE 15934.59078 10025.88851 10716.09428 17931.83084 8945.92656 9673.69985 9929.138297 6561.707393 10667.29752 14509.13459 1.098245432 0.691005273 0.738575703 1.235899407 0.61657203 0.666731692 0.684337046 0.452246642 0.735212528 1 13.82467385 S(ph)PPYTAFLGNLPYDVTEESIK ddPTM_HeLa_A486_30min_R1 3 SPPYTAFLGNLPYDVTEESIK 21 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.523)PPY(0.399)T(0.078)AFLGNLPYDVTEESIK;S(0.354)PPY(0.291)T(0.354)AFLGNLPYDVTEESIK;S(0.52)PPY(0.39)T(0.09)AFLGNLPYDVTEESIK ;; 156.67 3.25E-10 91993000 78806 91222 43933 32101.8 54164 96764 92940 81864 74217 120318 TRUE FALSE FALSE 73282.10635 83993.2365 60945.03417 74734.61274 47370.24606 84826.2415 69685.42898 63225.35428 80650.18932 90189.58966 0.812533981 0.931296359 0.675743557 0.828639015 0.525229644 0.940532514 0.772654907 0.701027186 0.894229474 1 16.4606733 -7.988518526 5.309637151 0.999730584 0.775089072 0.286215553 0.115734968 0.177589969 16.67819859 0.108319594 0.028192862 1.03E-08 7.988518526 -0.224641512 S(ph)PPYTAFLGNLPYDVTEESIKEFFR ddPTM_HeLa_A485_30min_R1 1 SPPYTAFLGNLPYDVTEESIKEFFR 25 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.497)PPY(0.006)T(0.497)AFLGNLPYDVTEESIKEFFR 142.22 2.81E-09 2215700000 244070 252990 188870 312220 318720 312030 418180 364050 182640 419470 TRUE FALSE FALSE 298362.5295 282574.9798 258740.8725 329275.788 286987.1177 328367.4083 328832.4268 274766.1667 219294.1727 314903.8488 0.947471841 0.897337333 0.821650398 1.045639135 0.911348397 1.042754509 1.044231209 0.872539881 0.696384543 1 18.26455186 -5.23968192 24.9661342 0.946231978 0.889671629 0.056696103 0.10430287 2843.781667 3263161.531 0.029744347 0.051466869 5.76E-06 5.23968192 -0.056560349 S(ph)PPYTAFLGNLPYDVTEESIKEFFR ddPTM_HeLa_A486_30min_R1 1 SPPYTAFLGNLPYDVTEESIKEFFR 25 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.999)PPY(0.001)T(0.001)AFLGNLPYDVTEESIKEFFR 213.37 1.61E-29 1117700000 233440 240110 145720 120430 269120 245590 331830 276850 198770 268370 TRUE FALSE FALSE 217077.0615 221082.8091 202146.6865 280367.1262 235364.4602 215291.6028 248802.6243 213817.2986 215999.5436 201168.4052 1.079081286 1.098993696 1.004862997 1.393693636 1.169987205 1.070205843 1.236787775 1.062877137 1.073724989 1 17.61804421 -9.67554994 6.614895784 1 1.135530941 0.12155314 0.106324843 3.22E-10 1.18E-10 0.104524889 0.025351009 2.11E-10 9.67554994 0.135530941 S(ph)PQFINLK ddPTM_HeLa_A485_30min_R1 4 SPQFINLK 8 0 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 S(1)PQFINLK;S(1)PQFINLK;S(1)PQFINLK;S(1)PQFINLK ;;; 97.163 0.0027277 1036090000 937770 1027290 757890 908800 1170400 1029850 1131740 1250450 876820 1239000 TRUE FALSE FALSE 1146373.701 1147422.629 1038265.049 958445.4428 1053870.866 1083771.354 889934.5035 943775.1769 1052789.731 930140.1021 1.232474225 1.233601934 1.116245872 1.030431266 1.133023793 1.165170012 0.956774685 1.014659162 1.131861457 1 19.82708851 -1.00000002 0.32114617 1.029674208 3.301065151 0.514679024 0.064088661 47.04672831 0.671906385 0.06274631 62.83825563 0.099999995 1.00000002 2.271390943 S(ph)PQFINLK ddPTM_HeLa_A486_30min_R1 3 SPQFINLK 8 0 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 S(1)PQFINLK;S(1)PQFINLK;S(1)PQFINLK ;; 99.752 0.0022822 1026070000 992740 1014520 631540 373176 922230 852820 968590 1016200 795370 987870 TRUE FALSE FALSE 923154.0525 934125.7404 876089.2012 868772.5873 806555.3139 747607.7392 726238.5373 784833.4435 864313.312 740500.922 1.246661584 1.26147816 1.183103458 1.17322283 1.089202309 1.00959731 0.980739545 1.059868287 1.167200859 1 19.49814201 -5.576563329 1.475405641 1.043014382 1.24426409 0.731848192 0.05062199 0.22118572 0.984759629 0.019165757 0.031512132 2.65E-06 5.576563329 0.201249708 S(ph)PQGQLDTSESKPDSFFLEPLMPAVLKPAK ddPTM_HeLa_A485_30min_R1 3 SPQGQLDTSESKPDSFFLEPLMPAVLKPAK 30 2 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.47)PQGQLDT(0.237)S(0.237)ES(0.056)KPDSFFLEPLMPAVLKPAK;S(0.988)PQGQLDT(0.005)S(0.005)ES(0.002)KPDSFFLEPLMPAVLKPAK;S(0.997)PQGQLDT(0.001)S(0.001)ES(0.001)KPDSFFLEPLMPAVLKPAK ;; 190.22 2.36E-21 1468335000 93545 88486 53029.5 128723 101038 116665 150555 162448 85537 176965 TRUE FALSE FALSE 114353.7625 98833.66797 72647.31879 135754.8115 90978.30195 122773.399 118387.6943 122607.3733 102703.4913 132850.8823 0.860767806 0.743944385 0.546833544 1.021858562 0.684815188 0.924144401 0.891132165 0.922894686 0.77307346 1 17.01944828 -5.831361609 1.093249696 0.893824578 0.743977482 0.176890286 0.128084093 0.880464287 2.246383304 0.056010393 0.078043442 1.47E-06 5.831361609 -0.149847096 S(ph)PQGQLDTSESKPDSFFLEPLMPAVLKPAK ddPTM_HeLa_A486_30min_R1 3 SPQGQLDTSESKPDSFFLEPLMPAVLKPAK 30 2 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.622)PQGQLDT(0.126)S(0.126)ES(0.126)KPDSFFLEPLMPAVLKPAK;S(0.975)PQGQLDT(0.008)S(0.008)ES(0.008)KPDSFFLEPLMPAVLKPAK;S(1)PQGQLDTSESKPDSFFLEPLMPAVLKPAK ;; 311.16 3.04E-109 974861000 309216 304869 141248 146447.2 280230 371817 458938 389873 275242 473350 TRUE FALSE FALSE 287541.5552 280710.0701 195943.0084 340936.4826 245080.9404 325945.9989 344106.8582 301107.4288 299100.1982 354820.079 0.810386932 0.791133554 0.552232018 0.960871447 0.690718916 0.91862332 0.969806611 0.848620038 0.842963 1 18.43672813 -6.277585831 24.42751922 0.909904113 0.76223698 0.348465141 0.10575654 745.640695 1128055.366 0.036484024 0.032284835 5.28E-07 6.277585831 -0.147667133 S(ph)PQHFHRPDQGINIYR ddPTM_HeLa_A485_30min_R1 4 SPQHFHRPDQGINIYR 16 1 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR ;;; 223.07 4.40E-34 3807220000 314523 323279 350975 262324 359233 373460 329116 393619 303053 300727 TRUE FALSE FALSE 384487.5563 361083.6669 480815.2578 276654.0959 323466.5012 393013.7881 258797.678 297083.3231 363872.9573 225761.2934 1.703071198 1.59940467 2.129750634 1.225427494 1.432781042 1.740837777 1.146333254 1.315917882 1.611759713 1 17.78443863 -1.000000007 0.048438773 3.38E-14 4.215330413 0.379282193 0.249910238 555.9956006 2.040502784 42.84697999 177.4312958 0.099999998 1.000000007 4.215330413 S(ph)PQHFHRPDQGINIYR ddPTM_HeLa_A486_30min_R1 4 SPQHFHRPDQGINIYR 16 1 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR ;;; 252.31 1.23E-43 3900840000 253576 285744 227325 91829 234750 232348 239323 238763 205785 252944 TRUE FALSE FALSE 235801.6319 263100.6048 315351.328 213782.5528 205305.466 203683.2661 179441.8541 184401.8771 223622.6095 189605.176 1.243645542 1.387623536 1.663199996 1.127514329 1.082805176 1.074249503 0.946397445 0.972557189 1.179411945 1 17.53263882 -5.439734326 6.34200854 1.043463336 1.426254106 0.702683144 0.113400649 0.132610585 8.283688773 0.032952207 0.048905325 3.63E-06 5.439734326 0.38279077 S(ph)PQISMSDIDLNLK ddPTM_HeLa_A486_30min_R1 1 SPQISMSDIDLNLK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.999)PQISMSDIDLNLK 90.367 0.0013787 34337000 52396 63834 34067 18153 37438 50773 47171 37090 43393 45871 TRUE FALSE FALSE 48723.31097 58775.56136 47258.65475 42261.1014 32742.17694 44509.14348 35368.31688 28645.41667 47154.34018 34384.60303 1.417009553 1.709356985 1.374413272 1.229070505 0.952233676 1.294449828 1.028609138 0.83308848 1.371379514 1 15.06947507 -5.22407982 2.204203709 1.081068575 1.560380336 0.568883135 0.165728487 0.212100639 2.010349474 0.047666353 0.094504387 5.97E-06 5.22407982 0.479311761 S(ph)PQISMSDIDLNLKGPK ddPTM_HeLa_A486_30min_R1 2 SPQISMSDIDLNLKGPK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(1)PQISMSDIDLNLKGPK;S(0.999)PQIS(0.001)MSDIDLNLKGPK ; 154.84 1.24E-08 740360000 798220 698700 292500 259460 447590 629150 676590 617050 414270 800430 TRUE FALSE FALSE 742268.9 643332.4674 405763.8334 604035.9924 391449.0886 551531.8697 507300.0258 476561.1851 450179.2572 599997.1181 1.237120776 1.072225929 0.676276304 1.00673149 0.652418281 0.919224198 0.845504104 0.794272457 0.750302366 1 19.19459605 -4.572302987 5.16269719 0.827503387 1.202359235 0.574265961 0.115393411 0.1066465 6.173953888 0.027229666 0.079287173 2.68E-05 4.572302987 0.374855849 S(ph)PQKPIVR ddPTM_HeLa_A485_30min_R1 3 SPQKPIVR 8 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YES9;H7C5K3;A0A2R8Y467 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(1)PQKPIVR;S(1)PQKPIVR;S(1)PQKPIVR ;; 69.979 0.0081612 512532000 365603 310672 293806 505892 374546 313067 407497 302614 324956 587710 TRUE FALSE FALSE 446930.126 347002.3879 402497.0657 533527.599 337254.8851 329458.704 320431.937 228397.442 390171.6885 441204.713 1.012976772 0.786488398 0.912268282 1.209251813 0.764395473 0.74672526 0.726265898 0.517667729 0.884332549 1 18.75108868 -5.960871956 24.99939605 0.743334683 0.964710211 0.293311402 0.152849378 187.4836306 119784.8375 0.046936852 0.053221309 1.09E-06 5.960871956 0.221375528 S(ph)PQKPIVR ddPTM_HeLa_A486_30min_R1 2 SPQKPIVR 8 1 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YES9;H7C5K3;A0A2R8Y467 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(1)PQKPIVR;S(1)PQKPIVR ; 63.624 0.012939 423170000 251684 329357 174015 102152 242730 309347 297830 272639 266679 361080 TRUE FALSE FALSE 234042.2513 303257.5518 241398.2683 237815.0185 212284.54 271182.9123 223309.7839 210565.0514 289794.9504 270663.2178 0.864699139 1.120423951 0.891876888 0.878638111 0.784312482 1.001920078 0.82504666 0.77795961 1.070684642 1 18.04613932 -4.913920624 24.99999999 0.891347738 0.995962043 0.08782268 0.108528715 43.48519787 12622.71372 0.026846615 0.055885692 1.22E-05 4.913920624 0.104614305 S(ph)PQLSDFGLER ddPTM_HeLa_A485_30min_R1 6 SPQLSDFGLER 11 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 S(0.998)PQLS(0.002)DFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER ;;;;; 176.56 8.20E-09 1242030000 526528 639159 616570 531543 655652 592837 730674 671314 512364 678505 TRUE FALSE FALSE 643652.3371 713903.0851 844664.9006 560579.8482 590372.9847 623877.0286 574559.5308 506673.1889 615190.7551 509366.1905 1.263633804 1.401551769 1.658266521 1.100543889 1.159034494 1.224810441 1.127989139 0.994713034 1.20775734 1 18.95834368 -5.287366942 24.96069984 1.122962142 1.437190817 0.627558717 0.114554162 466.4290123 449034.4019 0.032499793 0.048222336 5.16E-06 5.287366942 0.314228674 S(ph)PQLSDFGLER ddPTM_HeLa_A486_30min_R1 6 SPQLSDFGLER 11 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER ;;;;; 217.57 9.09E-18 1846386000 564696 595073 475321 174654.6 623314 538510 569479 594832 460694 637108 TRUE FALSE FALSE 525113.7265 547917.2483 659378.0207 406604.7354 545132.1459 472074.1114 426989.3309 459401.7387 500627.3269 477572.0099 1.099548792 1.147297657 1.380688162 0.851399845 1.141465862 0.988487812 0.894083661 0.961952814 1.048276106 1 18.86535876 -5.268554769 24.98146577 0.985124522 1.202990151 0.514264455 0.100373989 442.7727862 1554533.032 0.028078776 0.042645528 5.39E-06 5.268554769 0.217865629 S(ph)PQMVSAIVR ddPTM_HeLa_A485_30min_R1 3 SPQMVSAIVR 10 0 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y7Z0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 S(1)PQMVSAIVR;S(1)PQMVSAIVR;S(1)PQMVSAIVR ;; 88.392 0.0035045 558340000 149558 164954 146571 164192 205905 137398 165815 162443 136918 249348 TRUE FALSE FALSE 182826.6611 184243.9354 200793.7122 173161.3932 185404.3752 144591.9468 130387.2707 122603.5995 164396.1867 187190.1325 0.976689629 0.984260938 1.072672526 0.925056203 0.990460195 0.772433594 0.696549914 0.654968282 0.87823105 1 17.51414486 -6.261437219 13.53561412 0.772371317 0.990529664 0.477481035 0.096859964 0.053009255 1736.515196 0.032035538 0.030091858 5.48E-07 6.261437219 0.218158347 S(ph)PQMVSAIVR ddPTM_HeLa_A486_30min_R1 4 SPQMVSAIVR 10 0 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y7Z0 A0A2R8Y804 CTNNB1 Catenin beta-1 1 0 S(1)PQMVSAIVR;S(1)PQMVSAIVR;S(1)PQMVSAIVR;S(1)PQMVSAIVR ;;; 94.547 0.0025489 667760000 223885 216234 162749 96916 254348 229874 281021 239366 187848 289170 TRUE FALSE FALSE 208191.8176 199098.8303 225769.7714 225625.3459 222445.3021 201514.4831 210706.5735 184867.5871 204130.8159 216759.9498 0.960471793 0.91852222 1.041565896 1.040899604 1.026228795 0.929666588 0.972073363 0.852867826 0.941736774 1 17.72573869 -6.276559269 23.73465483 0.932123417 0.998002924 0.248879639 0.049843211 579.3918445 909504.299 0.018495972 0.016383101 5.29E-07 6.276559269 0.065879507 S(ph)PQNQYPAELMR ddPTM_HeLa_A485_30min_R1 3 SPQNQYPAELMR 12 0 P33993;C9J8M6;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 1 0 S(1)PQNQYPAELMR;S(1)PQNQYPAELMR;S(1)PQNQYPAELMR ;; 107.82 0.00049546 358334000 85241 148269 166722 72817 164634 98281 98196 110916 94056 104195 TRUE FALSE FALSE 104202.5664 165607.7698 228399.4057 76794.80833 148242.4609 103426.8412 77215.62241 83713.67709 112932.1765 78221.10407 1.332154124 2.117175048 2.919920505 0.981765845 1.895172187 1.322237041 0.987145647 1.070218557 1.443755848 1 16.25527028 -5.899246489 1.197526193 1.143430678 2.033574805 0.337963678 0.486971015 0.525332413 1.591098015 0.213885651 0.270837891 1.26E-06 5.899246489 0.890144128 S(ph)PQNQYPAELMR ddPTM_HeLa_A486_30min_R1 3 SPQNQYPAELMR 12 0 P33993;C9J8M6;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 1 0 S(1)PQNQYPAELMR;S(1)PQNQYPAELMR;S(1)PQNQYPAELMR ;; 109.07 0.0004585 502030000 75826 97947 86364 45222 109481 93730 99594 88809 71342 101544 TRUE FALSE FALSE 70510.98897 90185.323 119806.4537 105279.1014 95748.87211 82166.54558 74674.5278 68589.12939 77525.982 76116.72146 0.926353469 1.184829316 1.573983369 1.383127115 1.257921653 1.079480881 0.981052867 0.90110462 1.018514467 1 16.2159258 -6.407991496 2.51395862 0.96807961 1.287077478 0.438337297 0.155134804 0.289547839 3.580191906 0.067774569 0.057096265 3.91E-07 6.407991496 0.318997868 S(ph)PQPARPGSAAVPGAAFAPIPR ddPTM_HeLa_A485_30min_R1 2 SPQPARPGSAAVPGAAFAPIPR 22 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PQPARPGSAAVPGAAFAPIPR;S(1)PQPARPGSAAVPGAAFAPIPR ; 149.16 6.75E-10 1565170000 161269 145310 172761 196204 235190 147962 199711 163271 161930 247748 TRUE FALSE FALSE 197142.7327 162302.7405 236672.4831 206922.1277 211773.6578 155709.0615 157041.1134 123228.5313 194427.8657 185988.9831 1.059969948 0.872647066 1.272508076 1.112550455 1.138635495 0.83719508 0.844357073 0.662558229 1.045373024 1 17.50485764 -6.26602725 24.84661998 0.854710334 1.090368821 0.382854405 0.133836102 358.499042 1941523.605 0.046275889 0.042167735 5.42E-07 6.26602725 0.235658487 S(ph)PQPARPGSAAVPGAAFAPIPR ddPTM_HeLa_A486_30min_R1 3 SPQPARPGSAAVPGAAFAPIPR 22 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.999)PQPARPGS(0.001)AAVPGAAFAPIPR;S(1)PQPARPGSAAVPGAAFAPIPR;S(1)PQPARPGSAAVPGAAFAPIPR ;; 156.73 2.01E-10 1848700000 150211 215977 295066 82936 299012 210405 264186 237917 192809 228429 TRUE FALSE FALSE 139681.9846 198862.1959 409323.4573 193079.1994 261507.1268 184447.3703 198083.8685 183748.4928 209521.8394 171228.8916 0.815761775 1.161382253 2.390504626 1.127608767 1.527237164 1.077197713 1.156836715 1.073116173 1.22363602 1 17.38556662 -6.2685243 23.57986306 1.11389452 1.430387745 0.127120231 0.387669595 564.5071543 1878770.068 0.139005152 0.125389128 5.39E-07 6.2685243 0.316493226 S(ph)PQPNKRHS(ph)PS(ph)PRPR ddPTM_HeLa_A485_30min_R1 4 SPQPNKRHSPSPRPR 15 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)PQPNKRHS(1)PS(1)PRPR;S(1)PQPNKRHS(1)PS(1)PRPR;S(1)PQPNKRHS(1)PS(1)PRPR;S(1)PQPNKRHS(1)PS(1)PRPR ;;; 101.48 0.00037153 3906040000 189199 940860 299628 63006 482920 1110710 1202810 3215210 273876 144434 TRUE FALSE FALSE 231285.6648 1050885.393 410472.8658 66447.85824 434838.7892 1168865.058 945819.8174 2426674.706 328840.4011 108429.2619 2.133055789 9.691898424 3.785628146 0.612822195 4.010345376 10.779978 8.72292037 22.38025662 3.03276436 1 16.72639463 -6.257393608 23.4231522 10 4.15508821 0.158360577 5.766302227 246.5327417 1427312.142 1.898949536 1.830096329 5.53E-07 6.257393608 -5.84491179 S(ph)PQPNKRHS(ph)PS(ph)PRPR ddPTM_HeLa_A486_30min_R1 2 SPQPNKRHSPSPRPR 15 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)PQPNKRHS(1)PS(1)PRPR;S(1)PQPNKRHS(1)PS(1)PRPR ; 80.236 0.003275 443160000 178468 81813 72225 62021 228714 87035 164888 232813 53217 180066 TRUE FALSE FALSE 165958.3148 75329.83992 100192.4543 144388.0224 200026.5574 76297.50661 123631.2784 179806.5622 57829.89241 134976.3016 1.229536688 0.558096785 0.742296633 1.069728691 1.481938349 0.565265945 0.915948036 1.332134309 0.428444784 1 17.0423466 -5.259246466 24.82130348 0.986486123 0.814788714 0.026114731 0.333021241 615.2389759 6963761.757 0.090213176 0.146995741 5.50E-06 5.259246466 -0.171697409 S(ph)PQPNKRHS(ph)PSPRPR ddPTM_HeLa_A485_30min_R1 1 SPQPNKRHSPSPRPR 15 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(0.999)PQPNKRHS(0.901)PS(0.1)PRPR 49.973 0.031118 336100000 15052 54509 18014 4782.6 31212 68486 63489 154460 21746 9424 TRUE FALSE FALSE 18400.26547 60883.35338 24678.12823 5043.861328 28104.42369 72071.82106 49924.05649 116578.4428 26110.22273 7074.770236 2.600828699 8.605700447 3.488187941 0.712936415 3.972485713 10.18716066 7.056632912 16.47805355 3.6906107 1 12.78846758 -6.248100555 23.3708817 8.61075364 3.941512596 0.148339038 4.279116606 508.1905115 890396.8654 1.369194834 1.359992743 5.65E-07 6.248100555 -4.669241044 S(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_A485_30min_R1 1 SPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 30 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 S(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK 193.77 1.69E-21 83631000 51972 44284 39479 74025 67992 51083 68434 68330 47288 88207 TRUE FALSE FALSE 63532.9921 49462.62858 54083.92496 78068.79831 61222.47775 53757.62689 53812.51685 51571.96036 56778.26785 66218.61823 0.959443036 0.74695954 0.816748014 1.178955412 0.924550819 0.811820426 0.812649347 0.778813599 0.857436615 1 16.01494929 -6.251308834 22.96029266 0.835851437 0.923479648 0.0787669 0.118698435 575.7259676 1304847.327 0.041527654 0.040990571 5.61E-07 6.251308834 0.087628211 S(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_A486_30min_R1 1 SPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 30 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0;M0R0K8;M0QYI8 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 S(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK 221.86 7.15E-39 43322000 43214 58752 38056 26899 59006 67170 68511 68834 60936 68479 TRUE FALSE FALSE 40184.92176 54096.27755 52792.30238 62622.2314 51604.91727 58883.24833 51368.82316 53162.00084 66217.98154 51331.41268 0.782852442 1.053863019 1.028459955 1.219959244 1.005328211 1.147119186 1.000728803 1.035662143 1.290008946 1 15.64755434 -4.042893156 1.787838038 1.093581782 0.519864454 0.483707924 0.094914246 1.473930371 2.952804475 0.024541754 1.713106549 9.06E-05 4.042893156 -0.573717328 S(ph)PQPPSR ddPTM_HeLa_A485_30min_R1 1 SPQPPSR 7 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 S(1)PQPPSR 68.214 0.022649 1701700000 56513 78592 64494 58406 79817 70949 73564 81736 71174 75079 TRUE FALSE FALSE 69084.12188 87782.65074 88353.01442 61596.57189 71870.13923 74663.77993 57846.45044 61690.11784 85457.96895 56363.18703 1.225695805 1.557446542 1.567565978 1.092851117 1.275125539 1.324690527 1.026316174 1.094510816 1.516201859 1 15.78246557 -5.261862159 24.99998502 1.196238797 1.460957155 0.328497646 0.170159884 43.56702145 2576302.782 0.046548532 0.074100926 5.47E-06 5.261862159 0.264718358 S(ph)PQPPSR ddPTM_HeLa_A486_30min_R1 1 SPQPPSR 7 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 S(1)PQPPSR 100.57 0.0044238 1287000000 413000 505710 404780 175780 544020 431250 439930 473800 417560 509170 TRUE FALSE FALSE 384050.8327 465635.6978 561521.6564 409224.7234 475783.9388 378046.7596 329854.8609 365926.083 453754.437 381670.5179 1.00623657 1.219993885 1.471220936 1.072193697 1.246582894 0.990505533 0.864239823 0.958748622 1.188864258 1 18.54196822 -6.267486858 23.40552327 0.989378916 1.21178292 0.352734044 0.136684853 225.9696367 874564.2669 0.048595817 0.044029335 5.40E-07 6.267486858 0.222404004 S(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_HeLa_A485_30min_R1 15 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 30 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1W2PP35;Q5RI18;A0A1W2PRI6 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ;;;;;;;;;;;;;; 358.22 4.36E-147 12906371500 919632.6 473645.04 779451.17 1651010 1294564.5 660937.1 1064979.3 685682.4 989582.38 2364934.6 TRUE FALSE FALSE 1124201.699 529033.7073 1067802.593 1741200.496 1165673.113 695542.7446 837437.7725 517517.7163 1188182.487 1775399.928 0.6332104 0.297980021 0.601443414 0.980737055 0.656569314 0.391766798 0.471689651 0.2914936 0.669247795 1 20.75971261 -8.017211276 24.0513172 1.000000018 0.541737443 0.344470134 0.191644638 834.9014422 1166705.647 0.200397017 0.051742287 9.61E-09 8.017211276 -0.458262575 S(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_HeLa_A486_30min_R1 30 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 30 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1W2PP35;Q5RI18;A0A1W2PRI6 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(0.801)PQPPVEEEDEHFDDT(0.199)VVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 351.12 1.03E-146 20656862000 558456.94 1189513.8 932633.6 517596 1317682.3 1388354.6 1458674.1 1263495.9 1198806.8 954395.1 TRUE FALSE FALSE 519311.9924 1095252.394 1293774.307 1204989.646 1152406.299 1217073.525 1093698.412 975825.4655 1302720.339 715408.3549 0.725895901 1.530947167 1.808441707 1.684338235 1.610837071 1.701229119 1.528775006 1.364011839 1.820946498 1 19.44840744 -10.4836971 5.664893739 0.999351101 1.545730817 0.218662845 0.299674553 0.00244671 0.000222994 0.289066007 0.070030597 3.28E-11 10.4836971 0.546379716 S(ph)PQQSAALPR ddPTM_HeLa_A485_30min_R1 4 SPQQSAALPR 10 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 S(1)PQQSAALPR;S(1)PQQSAALPR;S(1)PQQSAALPR;S(0.994)PQQS(0.006)AALPR ;;; 146.68 4.92E-06 9212700000 789490 887370 978150 1013680 1235660 1046020 1330510 1146760 931580 1474290 TRUE FALSE FALSE 965109.3268 991140.2024 1340008.389 1069054.772 1112633.352 1100787.99 1046235.669 865515.312 1118539.561 1106776.635 0.872000091 0.89551963 1.210730645 0.965917365 1.005291688 0.994589111 0.945299743 0.782014441 1.010628094 1 20.07793266 -6.888413322 4.610201004 0.912145724 0.995632294 0.055738289 0.103495646 0.492703386 17.65161378 0.045530125 0.030138077 1.29E-07 6.888413322 0.083486569 S(ph)PQQSAALPR ddPTM_HeLa_A486_30min_R1 3 SPQQSAALPR 10 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 S(1)PQQSAALPR;S(1)PQQSAALPR;S(1)PQQSAALPR ;; 172.21 2.11E-07 8998900000 1126970 1168270 903840 421847 1086280 1106400 1205460 1313440 915030 1359710 TRUE FALSE FALSE 1047975.223 1075692.03 1253831.054 982081.135 950028.6332 969903.6171 903841.1579 1014398.384 994345.5371 1019229.766 1.028203118 1.055396993 1.230175075 0.963552251 0.932104482 0.951604486 0.886788424 0.995259772 0.975585261 1 19.95904789 -5.424086344 11.0339964 0.952426993 1.099593282 0.573916341 0.057843348 0.409789003 43.86472145 0.016347964 0.024249725 3.77E-06 5.424086344 0.147166289 S(ph)PQQTVPYVVPLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 2 0 S(0.929)PQQT(0.071)VPY(0.002)VVPLS(0.999)PK;S(0.985)PQQT(0.015)VPY(0.001)VVPLS(0.999)PK ; 84.035 0.0051048 219058000 259270 238690 169767 473120 348610 275500 410830 350310 242920 562720 TRUE FALSE FALSE 316943.717 266602.7192 232570.8779 498965.3476 313901.1644 289924.754 323052.8143 264395.9232 291671.8158 422444.2601 0.750261625 0.631095613 0.550536248 1.181138897 0.743059367 0.686302979 0.764722935 0.625871738 0.690438582 1 18.68840147 S(ph)PQQTVPYVVPLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 2 0 S(1)PQQTVPYVVPLS(1)PK;S(0.91)PQQT(0.09)VPY(0.002)VVPLS(0.998)PK ; 135.98 1.92E-05 278840000 495340 489000 249830 331180 401090 557740 681880 656810 421390 886690 TRUE FALSE FALSE 460619.2239 450249.8591 346570.8667 771003.7769 350781.5522 488931.7095 511266.4118 507268.7011 457916.4245 664657.0526 0.693017884 0.677416808 0.521428104 1.160002401 0.527763229 0.735615018 0.769218366 0.763203669 0.688951426 1 19.34225061 -14 0.324742752 3.640185788 0.717593407 0.194242818 0.166752145 571.4301021 5.021504402 1039.103511 0.141802165 1.00E-14 14 -2.922592381 S(ph)PQQTVPYVVPLSPK ddPTM_HeLa_A485_30min_R1 2 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 S(0.996)PQQT(0.004)VPYVVPLSPK;S(1)PQQTVPYVVPLSPK ; 142.94 9.45E-08 296080000 302500 345260 314810 365100 432500 371750 439040 398030 390660 481030 TRUE FALSE FALSE 369790.0814 385635.1536 431271.3193 385044.4885 389438.7814 391214.2552 345235.5174 300412.5184 469061.8787 361118.0737 1.024014327 1.067892143 1.194266781 1.066256487 1.078425063 1.083341665 0.956018384 0.83189555 1.298915543 1 18.4621111 -6.66620974 8.635757015 1.007854978 1.089030836 0.062667198 0.116111603 0.649476493 52.55404859 0.043349485 0.033504055 2.16E-07 6.66620974 0.081175858 S(ph)PQRPGWS(ph)R ddPTM_HeLa_A485_30min_R1 2 SPQRPGWSR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PQRPGWS(1)R;S(1)PQRPGWS(1)R ; 67.275 0.0045818 210120000 243300 295720 236960 217310 261310 253640 274580 282240 225640 242360 TRUE FALSE FALSE 297421.2456 330301.8816 324621.3647 229181.095 235293.0589 266920.1982 215913.7399 213020.1975 270923.8783 181944.1123 1.634684639 1.815402968 1.78418175 1.259623585 1.29321612 1.467044989 1.186703637 1.170800169 1.489049988 1 17.47313584 -5.262331494 24.97893497 1.279878338 1.751821126 0.708344667 0.140390375 41.04367115 1149223.736 0.037563092 0.059592096 5.47E-06 5.262331494 0.471942788 S(ph)PQRPGWS(ph)R ddPTM_HeLa_A486_30min_R1 1 SPQRPGWSR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PQRPGWS(1)R 67.964 0.01795 173120000 150800 165460 115060 39699 116660 131320 127660 119070 125480 158110 TRUE FALSE FALSE 140229.6987 152348.347 159614.3134 92421.27828 102027.415 115119.0736 95718.11775 91960.36028 136356.7074 118518.2269 1.183190995 1.285442341 1.346749083 0.779806454 0.860858432 0.971319573 0.807623606 0.775917449 1.15051255 1 16.85474942 -5.257713595 24.99934249 0.893909716 1.273158977 0.678430188 0.1149924 175.9595458 1180652.455 0.030995054 0.051149981 5.52E-06 5.257713595 0.37924926 S(ph)PQRPGWSR ddPTM_HeLa_A485_30min_R1 5 SPQRPGWSR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR ;;;; 106.26 0.0005438 9637670000 197650 265891 188889 155496 192316 237558 160628 238126 194889 218491 TRUE FALSE FALSE 241616.5606 296984.6395 258766.9014 163990.3527 173168.3438 249996.1695 126308.5156 179725.2251 234001.4347 164025.2147 1.473045233 1.810603571 1.577604406 0.99978746 1.055742217 1.524132555 0.770055481 1.095717054 1.426618676 1 17.32355808 -5.185813603 5.644087903 1.128102299 1.649533269 0.521877659 0.217480754 0.173420251 9.767653829 0.058703561 0.103055738 6.52E-06 5.185813603 0.52143097 S(ph)PQRPGWSR ddPTM_HeLa_A486_30min_R1 6 SPQRPGWSR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR;S(1)PQRPGWSR ;;;;; 110.8 0.0004382 10779660000 373311 355949 223237 69962.1 261714 261127 249079 268850 258629 360868 TRUE FALSE FALSE 347143.8267 327742.3049 309680.3449 162875.3045 228887.3897 228911.8057 186756.7997 207638.724 281047.17 270504.3039 1.2833209 1.211597376 1.144825943 0.602117238 0.846150639 0.8462409 0.690402323 0.767598596 1.038974855 1 18.04529202 -5.101087803 5.644198565 0.814386922 1.231991091 0.674260571 0.123820882 0.121914955 5.540300261 0.033180026 0.058924734 7.92E-06 5.101087803 0.41760417 S(ph)PQRPS(ph)DWSK ddPTM_HeLa_A486_30min_R1 1 SPQRPSDWSK 10 1 Q5UIP0;Q5UIP0-2;H7BZN3 Q5UIP0 RIF1 Telomere-associated protein RIF1 2 0 S(1)PQRPS(1)DWSK 62.528 0.027641 1134200000 608090 855830 837310 41460 993790 605780 493460 629730 790420 202640 TRUE FALSE FALSE 565466.0312 788010.9139 1161538.856 96520.97527 869139.5915 531045.0227 369991.0887 486354.2259 858934.242 151897.625 3.722678554 5.187776397 7.646853304 0.635434394 5.721877424 3.496071927 2.435792453 3.201855367 5.654691716 1 17.21273979 -5.252320805 24.99982282 3.345531922 5.485969831 0.259574764 1.804545817 990.4305845 2715395.83 0.476450917 0.810380616 5.59E-06 5.252320805 2.140437909 S(ph)PQTLAPVGEDAMK ddPTM_HeLa_A485_30min_R1 2 SPQTLAPVGEDAMK 14 0 Q92797 Q92797 SYMPK Symplekin 1 0 S(0.998)PQT(0.002)LAPVGEDAMK;S(0.999)PQT(0.001)LAPVGEDAMK ; 92.773 0.0012087 172440000 159471 133834 114547 281750 190213 163512 234149 194813 159291 372020 TRUE FALSE FALSE 194944.7738 149484.7221 156922.702 297141.2891 171274.7258 172073.2355 184121.1533 147034.8063 191259.2426 279282.2605 0.69802061 0.535246033 0.561878516 1.063946162 0.613267472 0.616126621 0.659265479 0.526473848 0.684824171 1 18.09136441 -8.049073201 22.09443674 1.000000002 0.658865717 0.327947972 0.145514677 3996.432312 1799329.295 0.144251616 0.037245607 8.93E-09 8.049073201 -0.341134285 S(ph)PQVKPASTMGMGPLGK ddPTM_HeLa_A485_30min_R1 4 SPQVKPASTMGMGPLGK 17 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 S(1)PQVKPASTMGMGPLGK;S(1)PQVKPASTMGMGPLGK;S(1)PQVKPASTMGMGPLGK;S(1)PQVKPASTMGMGPLGK ;;; 240.71 1.11E-42 9196340000 5480830 4386840 3337610 6187950 5524280 5348260 7009870 6293350 4451020 7877970 TRUE FALSE FALSE 6700021.725 4899842.778 4572330.829 6525982.04 4974263.286 5628286.624 5512154.009 4749896.045 5344298.887 5914137.062 1.132882389 0.828496656 0.773118847 1.10345465 0.84108015 0.951666585 0.932030143 0.803142706 0.903648128 1 22.49573625 S(ph)PQVKPASTMGMGPLGK ddPTM_HeLa_A486_30min_R1 4 SPQVKPASTMGMGPLGK 17 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 S(1)PQVKPASTMGMGPLGK;S(1)PQVKPASTMGMGPLGK;S(1)PQVKPASTMGMGPLGK;S(0.928)PQVKPAS(0.058)T(0.014)MGMGPLGK ;;; 198.6 2.71E-25 8832080000 4877820 4704690 2303100 1746280 3935580 4876880 5125690 5019190 3631330 5674840 TRUE FALSE FALSE 4535910.007 4331873.23 3194921.999 4065428.092 3441942.859 4275220.13 3843188.148 3876430.005 3946096.608 4253823.127 1.06631373 1.018348225 0.75107072 0.955711597 0.809141038 1.005030064 0.903466842 0.911281426 0.927658835 1 22.02032862 -4.54286965 24.96959086 0.904804359 1.054322477 0.350878725 0.074292873 191.7101251 239454.5855 0.017721742 0.046898588 2.87E-05 4.54286965 0.149518118 S(ph)PQVLGSSLSVR ddPTM_HeLa_A485_30min_R1 1 SPQVLGSSLSVR 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 S(0.998)PQVLGS(0.002)S(0.001)LSVR 66.738 0.011611 0 62323 57440 55152 80172 67573 61117 82289 72017 45135 106910 TRUE FALSE FALSE 76186.53634 64157.10834 75555.01987 84551.59335 60845.19486 64316.99162 64707.28291 54354.71783 54193.1805 80259.30453 0.949254878 0.799372842 0.941386426 1.053480264 0.758107676 0.801364926 0.806227805 0.677238834 0.675226141 1 16.29238103 -5.793842417 24.99976937 0.771966298 0.926517389 0.330220065 0.102754531 218.8644887 168858.3916 0.031827417 0.036091605 1.61E-06 5.793842417 0.154551091 S(ph)PQVPAAQQMLNFPEK ddPTM_HeLa_A485_30min_R1 2 SPQVPAAQQMLNFPEK 16 0 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 S(1)PQVPAAQQMLNFPEK;S(1)PQVPAAQQMLNFPEK ; 213.03 1.47E-24 82279000 119081 85759 78207 143802 113256 89065 141061 98244 87698 161564 TRUE FALSE FALSE 145570.1576 95787.76905 107139.0238 151657.5391 101979.835 93728.30568 110922.165 74149.50496 105298.1842 121289.0682 1.200191904 0.789747753 0.883336193 1.250380941 0.840799888 0.772767959 0.914527308 0.611345326 0.868158902 1 16.88809 -5.968582623 24.99966043 0.813324218 1.008452291 0.262009835 0.157897531 273.4306011 217575.0301 0.048202474 0.054656034 1.08E-06 5.968582623 0.195128073 S(ph)PQVPAAQQMLNFPEK ddPTM_HeLa_A486_30min_R1 2 SPQVPAAQQMLNFPEK 16 0 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 S(1)PQVPAAQQMLNFPEK;S(1)PQVPAAQQMLNFPEK ; 136.04 7.71E-06 201596000 133252 183108 99987 77273 162817 210096 214851 210596 157807 202868 TRUE FALSE FALSE 123911.7229 168597.8552 138704.6441 179895.4492 142394.9737 184176.4916 161093.0073 162647.8881 171485.8378 152068.5324 0.814841315 1.108696537 0.912119306 1.182989317 0.936386848 1.211141377 1.059344789 1.069569658 1.12768786 1 17.21436212 -3.693902045 1.675802194 1.072472857 3.75E-33 0.381170135 0.093980372 6.108327129 4.322661131 0.023730718 17.00990243 0.000202348 3.693902045 -1.072472857 S(ph)PQWRR ddPTM_HeLa_A485_30min_R1 3 SPQWRR 6 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PQWRR;S(1)PQWRR;S(1)PQWRR ;; 103.83 0.0072402 302180000 22709.8 75704 45205 14781.9 57149 88275 80280 180196 36390.3 29668.8 TRUE FALSE FALSE 27761.51666 84556.92426 61928.21064 15589.39777 51459.0449 92896.9425 63127.52217 136002.6485 43693.49942 22272.91417 1.246424983 3.796401477 2.780426942 0.699926271 2.31038671 4.170848133 2.83427313 6.10619012 1.961732492 1 14.44300271 -6.181442953 7.870548604 3.508353176 2.204106274 0.093595437 1.496003696 0.60231506 53.54159333 0.47918352 0.479273365 6.59E-07 6.181442953 -1.304246902 S(ph)PRPAS(ph)PASNVVVLPSGSTVYVK ddPTM_HeLa_A486_30min_R1 1 SPRPASPASNVVVLPSGSTVYVK 23 1 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 2 0 S(1)PRPAS(0.969)PAS(0.031)NVVVLPSGSTVYVK 141.84 2.74E-09 123840000 187430 202060 125160 57863 179590 184490 202720 190790 183790 236210 TRUE FALSE FALSE 174292.1249 186048.0297 173625.3039 134707.9882 157064.1476 161729.4996 151997.3118 147351.2819 199721.0652 177061.4785 0.984359367 1.050753847 0.980593325 0.760797828 0.887059957 0.913408726 0.858443706 0.832204063 1.127975813 1 17.43389085 -5.01417486 24.67620142 0.898929917 1.017085884 0.168387195 0.095081134 794.3980158 1382929.83 0.024913432 0.045499834 9.68E-06 5.01417486 0.118155968 S(ph)PRPDHPGT(ph)PPHK ddPTM_HeLa_A485_30min_R1 2 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 2 0 S(1)PRPDHPGT(1)PPHK;S(1)PRPDHPGT(1)PPHK ; 137.05 0.00020389 1354020000 697240 773030 612380 726970 909290 872560 1116210 1032040 712760 1015780 TRUE FALSE FALSE 852338.6326 863429.134 838924.8453 766682.5303 818757.8949 918245.8924 877722.6149 778930.5718 855804.3942 762564.74 1.117726257 1.132269942 1.100135898 1.005399922 1.073689684 1.204154669 1.151013899 1.021461564 1.122271132 1 19.5405003 -8.828419345 0.912211237 0.999193158 1.104560932 0.232246115 0.055827568 7.151042361 6.540939902 0.078504064 0.019195877 1.48E-09 8.828419345 0.105367775 S(ph)PRPDHPGT(ph)PPHK ddPTM_HeLa_A486_30min_R1 2 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 2 0 S(1)PRPDHPGT(1)PPHK;S(1)PRPDHPGT(1)PPHK ; 146.15 2.12E-06 1406670000 786570 833970 675640 289890 931260 739290 835690 855190 753790 956500 TRUE FALSE FALSE 731435.5049 767883.1799 937265.9023 674878.5702 814452.6871 648083.9163 626591.523 660481.9057 819129.1241 716986.1742 1.020152872 1.07098743 1.307230092 0.941271386 1.13593918 0.903900158 0.873924136 0.921191969 1.142461534 1 19.45158577 -6.257774038 24.96182051 0.957471843 1.097012879 0.24245755 0.111239805 441.3461268 3005672.435 0.037721382 0.036323247 5.52E-07 6.257774038 0.139541036 S(ph)PRPDHPGTPPHK ddPTM_HeLa_A485_30min_R1 4 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK ;;; 141.13 4.00E-07 918762000 365482 457327 368846 396848 482737 507281 565578 663982 394490 529616 TRUE FALSE FALSE 446782.21 510807.4144 505297.4844 418526.8014 434674.0093 533841.4488 444737.64 501139.3734 473660.5245 397592.4781 1.12371897 1.284751203 1.270892968 1.052652715 1.093265173 1.342684981 1.118576594 1.260434744 1.191321644 1 18.60093094 -9.704345635 4.258193122 0.999999418 1.195239864 0.291609907 0.090257347 57948514.64 146089470.1 595.9038616 0.023044859 1.98E-10 9.704345635 0.195240446 S(ph)PRPDHPGTPPHK ddPTM_HeLa_A486_30min_R1 4 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK;S(1)PRPDHPGTPPHK ;;; 138.08 3.82E-06 1293200000 1070530 1024050 743130 367607 1082840 978300 1079120 1080360 869300 1158070 TRUE FALSE FALSE 995491.3752 942900.5485 1030889.838 855807.6738 947020.1101 857607.2926 809112.7622 834385.6121 944651.6239 868081.7342 1.14677148 1.086188675 1.187549279 0.985860709 1.090934267 0.987933807 0.932069793 0.961183238 1.088205853 1 19.72747136 -5.525049422 1.284280881 0.992942846 1.136605689 0.48928076 0.057563656 0.384604775 1.292128984 0.021213273 0.03905439 2.99E-06 5.525049422 0.143662843 S(ph)PRPQQDPARPQEPTMPPPETPSEGR ddPTM_HeLa_A486_30min_R1 1 SPRPQQDPARPQEPTMPPPETPSEGR 26 2 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(1)PRPQQDPARPQEPTMPPPETPSEGR 61.829 0.015242 341550000 21326 30258 16092 9513.8 19691 25762 27343 20608 21603 29821 TRUE FALSE FALSE 19831.15753 27860.24588 22323.25336 22148.6072 17221.17117 22583.74637 20501.4922 15916.00827 23475.56543 22353.6275 0.887156124 1.246341154 0.998641199 0.990828321 0.770397161 1.010294476 0.917143859 0.712010087 1.050190419 1 14.44822135 -5.339029282 2.763367074 0.901013658 1.069687774 0.165918861 0.129563838 0.389076409 5.801514574 0.036636095 0.061200374 4.58E-06 5.339029282 0.168674117 S(ph)PRPSPVPK ddPTM_HeLa_A485_30min_R1 1 SPRPSPVPK 9 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(1)PRPSPVPK 105.17 0.00056907 540800000 461910 218250 378760 957550 558510 250850 408690 259000 401850 1130400 TRUE FALSE FALSE 564660.2859 243772.439 518879.0855 1009858.532 502902.7834 263984.1181 321370.0428 195479.8439 482497.609 848612.0835 0.665392701 0.287260155 0.611444376 1.190011964 0.592617985 0.311077491 0.378700762 0.230352416 0.568572636 1 19.6947457 -8.048848263 21.54254668 1.000000009 0.530331663 0.220719046 0.261536626 3893.447216 1717047.001 0.276412505 0.071369402 8.94E-09 8.048848263 -0.469668346 S(ph)PRPSPVPK ddPTM_HeLa_A486_30min_R1 3 SPRPSPVPK 9 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.998)PRPS(0.002)PVPK;S(0.996)PRPS(0.004)PVPK;S(0.999)PRPS(0.001)PVPK ;; 113.77 0.00036926 1162040000 948360 1949130 1216398 736031 1681880 2105220 2014530 1951360 1743160 1770644 TRUE FALSE FALSE 881884.8613 1794673.84 1687419.882 1713517.365 1470922.927 1845499.361 1510473.286 1507077.926 1894258.512 1327263.217 0.66443856 1.352161212 1.271352856 1.291015484 1.108237543 1.390454686 1.138035973 1.135477806 1.427191297 1 20.34002308 -4.254560661 24.9568742 1.239886093 0.66443829 0.632384548 0.130428316 477.0648971 1730808.087 0.030209091 0.290475582 5.56E-05 4.254560661 -0.575447803 S(ph)PRPTGSDLLPGAPILSLR ddPTM_HeLa_A485_30min_R1 4 SPRPTGSDLLPGAPILSLR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 S(1)PRPTGSDLLPGAPILSLR;S(1)PRPTGSDLLPGAPILSLR;S(1)PRPTGSDLLPGAPILSLR;S(1)PRPTGSDLLPGAPILSLR ;;; 143.29 1.24E-08 2229480000 510070 634811 602635 503039 613044 558583 575531 504188 513772 641747 TRUE FALSE FALSE 623533.3118 709046.6243 825574.7642 530518.7468 552007.1868 587829.5421 452564.1002 380535.1025 616881.3278 481771.2834 1.294251719 1.471749456 1.713623856 1.10118383 1.14578682 1.220142342 0.939375417 0.789866718 1.280444371 1 18.87798888 -5.364051629 6.777865951 1.060588017 1.489640807 0.591820427 0.161888295 0.174241986 9.901381866 0.047374811 0.070550415 4.32E-06 5.364051629 0.429052791 S(ph)PRPTGSDLLPGAPILSLR ddPTM_HeLa_A486_30min_R1 4 SPRPTGSDLLPGAPILSLR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 S(1)PRPTGSDLLPGAPILSLR;S(0.999)PRPT(0.001)GSDLLPGAPILSLR;S(0.999)PRPT(0.001)GS(0.001)DLLPGAPILSLR;S(0.999)PRPT(0.001)GS(0.001)DLLPGAPILSLR ;;; 184.76 1.78E-18 2094260000 1103696 1193225 889774 335990 1028063 957166 1004467 992246 905872 1127924 TRUE FALSE FALSE 1026332.61 1098669.505 1234318.322 782201.7 899113.7522 839080.5907 753138.7324 766333.2464 984393.7143 845484.4888 1.213898804 1.299455543 1.459894697 0.92515204 1.063430216 0.992425765 0.890777705 0.906383566 1.164295416 1 19.68941876 -5.269503741 24.99946577 0.986683799 1.321920271 0.724481534 0.093962085 300.2057205 930635.33 0.026567097 0.040200065 5.38E-06 5.269503741 0.335236471 S(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_HeLa_A486_30min_R1 1 SPRPTSAPAITQGQVAEGGVLDASAK 26 1 A0A1B0GWG0;A0A2R8Y6D0;A0A2R8Y5C8;P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0 A0A1B0GWG0;P11171 EPB41 Protein 4.1 1 0 S(0.38)PRPT(0.306)S(0.306)APAIT(0.008)QGQVAEGGVLDASAK 97.437 0.0010868 376320000 165390 219010 154610 69332 192720 209580 209520 219370 184560 242990 TRUE FALSE FALSE 153797.0151 201654.85 214479.1326 161408.3998 168547.2606 183724.1505 157095.8799 169424.2398 200557.8094 182143.7224 0.844371758 1.107119407 1.177526899 0.886159554 0.925353113 1.008676819 0.862483087 0.930167878 1.101096468 1 17.47471775 -5.287550088 24.99648268 0.952853825 1.04941743 0.122471252 0.101482061 1356.984236 1299074.709 0.028703147 0.042588882 5.16E-06 5.287550088 0.096563605 S(ph)PS(ph)EERGHSTR ddPTM_HeLa_A485_30min_R1 2 SPSEERGHSTR 11 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 2 0 S(1)PS(0.96)EERGHS(0.019)T(0.022)R;S(0.998)PS(0.976)EERGHS(0.013)T(0.012)R ; 64.675 0.0030554 0 63322 120959 116983 99673 154332 118404 159473 208315 144127 153666 TRUE FALSE FALSE 77407.76044 135104.1028 160259.8798 105117.8836 138966.1642 124603.4504 125400.2908 157225.4196 173051.9669 115359.8942 0.671011021 1.171153144 1.389216598 0.911216886 1.204631515 1.080127987 1.087035418 1.362912308 1.500105111 1 16.81578222 -7.255394109 23.33676353 1.323631542 1.088443204 0.166824666 0.213063018 308.5361714 1191064.639 0.100954044 0.056194186 5.55E-08 7.255394109 -0.235188338 S(ph)PS(ph)EERGHSTR ddPTM_HeLa_A486_30min_R1 1 SPSEERGHSTR 11 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 2 0 S(1)PS(0.999)EERGHSTR 71.344 0.014015 83808000 76933 46523 97052 18570 101870 113580 90306 106360 93636 68708 TRUE FALSE FALSE 71540.39398 42836.34805 134633.1335 43231.89848 89092.5147 99567.6544 67710.48364 82144.14982 101752.4439 51503.06959 1.389051071 0.831724175 2.614079794 0.839404308 1.729848637 1.933237285 1.314688312 1.594936971 1.975657853 1 15.6523708 S(ph)PS(ph)GPVKSPPLSPVGTTPVK ddPTM_HeLa_A485_30min_R1 1 SPSGPVKSPPLSPVGTTPVK 20 1 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 2 0 S(0.982)PS(0.891)GPVKS(0.124)PPLS(0.002)PVGTTPVK 64.488 0.012163 81046000 142450 100430 76371 190200 140040 122120 187540 155600 112470 244070 TRUE FALSE FALSE 174137.5111 112174.4149 104623.811 200590.1444 126097.1259 128514.0144 147470.5469 117438.856 135041.6974 183227.8408 0.950387836 0.612212721 0.571003896 1.094757999 0.688198504 0.701389122 0.804847922 0.640944387 0.737015165 1 17.48327921 -10.13740819 6.035121462 1.000001553 0.750459624 0.187884591 0.152067753 3.12E-06 4.46E-07 0.144360494 0.035012345 7.29E-11 10.13740819 -0.24954193 S(ph)PS(ph)GS(ph)PRRS(ph)AS(ph)PER ddPTM_HeLa_A485_30min_R1 1 SPSGSPRRSASPER 14 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 5 0 S(1)PS(1)GS(1)PRRS(1)AS(1)PER 59.975 0.0096459 187650000 107280 135720 135900 174990 228520 178080 211230 230090 155100 251950 TRUE FALSE FALSE 131144.0659 151591.2734 186175.0653 184549.2606 205767.7464 187403.9934 166098.9849 173660.0667 186227.1473 189143.5018 0.693357502 0.801461705 0.984305903 0.975710288 1.087892232 0.990803235 0.878163846 0.918139217 0.98458126 1 17.52912169 -4.602344169 2.894624252 0.976136745 0.702849796 0.767166639 0.052165129 0.137032564 2.180162077 0.015563675 0.060525746 2.50E-05 4.602344169 -0.273286949 S(ph)PS(ph)GS(ph)PRRS(ph)AS(ph)PER ddPTM_HeLa_A486_30min_R1 1 SPSGSPRRSASPER 14 2 Q16629;Q16629-4;C9JAB2;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 5 0 S(1)PS(1)GS(1)PRRS(1)AS(1)PER 57.482 0.011588 203600000 99274 135610 120560 77640 179790 157460 191020 178830 139070 169320 TRUE FALSE FALSE 92315.40525 124863.7697 167244.0607 180749.8437 157239.0617 138034.1861 143224.7756 138114.3128 151124.6996 126921.1699 0.727344424 0.983789937 1.317700277 1.424111075 1.238871828 1.087558413 1.128454581 1.088189724 1.190697341 1 16.9535732 -4.47188229 3.48739121 1.192070619 0.743798367 0.5948961 0.117351606 0.179024837 4.102555989 0.033002817 0.155065111 3.37E-05 4.47188229 -0.448272252 S(ph)PS(ph)LSSK ddPTM_HeLa_A485_30min_R1 3 SPSLSSK 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3;Q9UPU5 A9Z1X7;M0R088;Q8IYB3;Q9UPU5 SRRM1;USP24 Serine/arginine repetitive matrix protein 1;Ubiquitin carboxyl-terminal hydrolase 24 2 0 S(1)PS(0.989)LS(0.011)SK;S(1)PS(0.983)LS(0.017)SK;S(1)PS(0.995)LS(0.005)SK ;; 83.278 0.006244 306010000 4693220 2582420 2874040 8602300 6235000 3432950 5853900 4386950 3888220 10965100 TRUE FALSE FALSE 5737210.598 2884411.555 3937266.995 9072221.867 5614221.508 3612693.954 4603166.443 3311043.634 4668550.089 8231702.368 0.696965262 0.3504028 0.478305315 1.102107615 0.682024356 0.438875678 0.559199815 0.402230728 0.567142722 1 22.97275939 -10.24345906 3.345876032 1.001222131 0.583673799 0.272196347 0.202869323 162021610.1 242249408.9 2046021.826 0.055713775 5.71E-11 10.24345906 -0.417548333 S(ph)PS(ph)LSSK ddPTM_HeLa_A486_30min_R1 3 SPSLSSK 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3;Q9UPU5 A9Z1X7;M0R088;Q8IYB3;Q9UPU5 SRRM1;USP24 Serine/arginine repetitive matrix protein 1;Ubiquitin carboxyl-terminal hydrolase 24 2 0 S(1)PS(0.996)LS(0.004)SK;S(1)PS(0.997)LS(0.003)SK;S(1)PS(0.995)LS(0.005)SK ;; 99.855 0.0095491 3736070000 5204060 8669400 4416380 4378590 8430900 10380900 11982400 11126300 6803060 9878800 TRUE FALSE FALSE 4839282.268 7982405.171 6126520.611 10193578.8 7373417.907 9100210.103 8984276.783 8593084.375 7392754.718 7405084.18 0.65350807 1.077962786 0.827339766 1.376564878 0.995723712 1.228913795 1.213257887 1.160430343 0.998335001 1 22.82008471 -3.815064988 1.004191513 1.13574368 2.08E-11 0.454904289 0.146378477 3.602693741 1.587070161 0.044387227 5.446201411 0.000153086 3.815064988 -1.13574368 S(ph)PS(ph)PAHLPDDPK ddPTM_HeLa_A486_30min_R1 2 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 2 0 S(1)PS(1)PAHLPDDPK;S(1)PS(1)PAHLPDDPK ; 105.46 0.00053605 221880000 316450 300440 112581 112054 168997 295430 318530 264540 205932 485360 TRUE FALSE FALSE 294268.4891 276632.0402 156175.3782 260867.3749 147799.8204 258982.8503 238830.4249 204310.0169 223782.3516 363822.6968 0.808823891 0.760348496 0.429262329 0.717017869 0.406241341 0.711838081 0.656447294 0.561564791 0.615086287 1 18.47287602 -10.34316166 3.044147459 1.003745142 0.624782685 0.436022339 0.126260415 39956017.23 51568025.19 1344945.825 0.033252145 4.54E-11 10.34316166 -0.378962457 S(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_HeLa_A485_30min_R1 3 SPSPAPAPAPAAAAGPPTR 19 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR ;; 232.01 3.31E-35 2751950000 235491 281522 253757 284524 316763 280162 360063 397453 223897 392093 TRUE FALSE FALSE 287875.1605 314443.549 347632.274 300066.8257 285224.9635 294830.8491 283132.5986 299977.0286 268831.0742 294351.431 0.977998169 1.068258944 1.181010987 1.019416908 0.968994655 1.001628727 0.961886265 1.01911184 0.913299702 1 18.16718012 -5.514847761 22.89221899 0.980263689 1.0792076 0.407857252 0.052944512 118.9605484 339096.1178 0.015379108 0.020876714 3.06E-06 5.514847761 0.098943911 S(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_HeLa_A486_30min_R1 3 SPSPAPAPAPAAAAGPPTR 19 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR ;; 279.12 3.06E-69 2756180000 460117 584028 356001 174979 522649 445617 532703 542130 410339 590288 TRUE FALSE FALSE 427865.1743 537747.4943 493854.1212 407359.9549 457093.4889 390641.3052 399415.075 418698.8336 445907.5149 442476.0427 0.966979301 1.215314373 1.116114939 0.920637313 1.033035565 0.882853008 0.90268181 0.946263285 1.007755159 1 18.75523982 -5.255494019 24.22118181 0.951854669 1.111054041 0.450851685 0.07202189 254.5252343 1036921.853 0.019220744 0.032178657 5.55E-06 5.255494019 0.159199372 S(ph)PS(ph)PAPEK ddPTM_HeLa_A485_30min_R1 1 SPSPAPEK 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPEK 72.848 0.030471 727120000 1086500 960580 464790 939100 546000 995230 1142900 1031500 632180 993600 TRUE FALSE FALSE 1328188.177 1072911.475 636735.1625 990400.6551 491638.3229 1047338.704 898710.0784 778523.0077 759052.7273 745913.8059 1.780618841 1.438385329 0.853631019 1.327768232 0.659108759 1.404101514 1.204844409 1.043717118 1.01761453 1 19.5086494 -4.528195632 4.139528818 1.078044375 1.729114611 0.551145339 0.207026447 0.140036798 5.54570445 0.051026418 0.183376257 2.96E-05 4.528195632 0.651070236 S(ph)PS(ph)PAPEKK ddPTM_HeLa_A485_30min_R1 3 SPSPAPEKK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPEKK;S(1)PS(1)PAPEKK;S(1)PS(1)PAPEKK ;; 137.01 8.02E-05 1635760000 2247640 1597550 420980 2209030 615030 1880420 2146910 2495110 1030350 2126580 TRUE FALSE FALSE 2747619.764 1784369.576 576718.0204 2329703.715 553795.4537 1978875.884 1688205.14 1883180.36 1237131.794 1596462.743 1.721067263 1.117701984 0.361247403 1.459291002 0.346889056 1.23953778 1.057466043 1.179595558 0.774920555 1 20.60644745 -4.311823102 4.076309637 0.937556071 1.754777519 0.326537668 0.339975255 0.223685331 7.12637658 0.080201161 0.472114568 4.88E-05 4.311823102 0.817221448 S(ph)PS(ph)PAPEKK ddPTM_HeLa_A486_30min_R1 4 SPSPAPEKK 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPEKK;S(1)PS(1)PAPEKK;S(1)PS(1)PAPEKK;S(1)PS(1)PAPEKK ;;; 140.78 6.10E-05 1220918000 5321790 1346340 672698 863496 700049 3045970 2189840 1538500 1955270 6577370 TRUE FALSE FALSE 4948760.003 1239651.115 933184.6811 2010262.327 612242.3267 2670189.191 1641918.87 1188217.135 2124754.378 4930353.741 1.003733254 0.25143249 0.189273373 0.407731865 0.124178174 0.541581666 0.333022529 0.241000382 0.430953739 1 22.23325973 -8.045110822 21.2860601 1.000000004 0.368594843 0.373382872 0.236225612 1514.539338 714653.3047 0.219779072 0.056746712 9.01E-09 8.045110822 -0.631405161 S(ph)PS(ph)PAPPPR ddPTM_HeLa_A485_30min_R1 5 SPSPAPPPR 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR ;;;; 99.864 0.0040675 14131850000 4902470 5555110 5210720 6237710 6893080 5507980 7186850 6969980 5317080 8078230 TRUE FALSE FALSE 5993007.538 6204731.791 7138382.164 6578460.303 6206780.752 5796369.316 5651320.786 5260581.476 6384169.185 6064475.93 0.98821524 1.02312745 1.177081457 1.084753304 1.023465312 0.955790638 0.931872902 0.867442057 1.052715727 1 22.53195155 -6.093626323 2.923456328 0.951020865 1.07205551 0.377456768 0.063915204 0.271056775 4.489995503 0.02316804 0.023790862 8.06E-07 6.093626323 0.121034645 S(ph)PS(ph)PAPPPR ddPTM_HeLa_A486_30min_R1 4 SPSPAPPPR 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR ;;; 99.864 0.0027769 16953600000 3012150 3461130 2828060 1293314 3551820 3691860 3834900 3850430 2881840 3907880 TRUE FALSE FALSE 2801013.84 3186857.454 3923160.57 3010900.352 3106317.616 3236395.849 2875367.459 2973771.143 3131640.212 2929321.412 0.956198875 1.087916621 1.339272828 1.027849092 1.060422255 1.10482784 0.981581416 1.015174071 1.069066781 1 21.48213507 -6.21818178 1.309069968 1.022166891 1.115790374 0.117734527 0.095905476 0.937215605 3.268340699 0.047369837 0.044321425 6.05E-07 6.21818178 0.093623483 S(ph)PS(ph)PAPPPRR ddPTM_HeLa_A485_30min_R1 2 SPSPAPPPRR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPPPRR;S(1)PS(1)PAPPPRR ; 71.806 0.0057064 2533020000 429300 550470 540180 454910 665190 501520 657670 656050 520050 570410 TRUE FALSE FALSE 524796.3039 614842.678 740015.0608 479760.5814 598961.348 527778.8117 517153.4318 495152.7089 624419.2648 428217.2846 1.225537415 1.435819385 1.728129824 1.120367156 1.398732301 1.232502355 1.207689298 1.156311823 1.458183234 1 18.7079835 -5.28988714 24.99897223 1.238191433 1.460428089 0.296585397 0.16730153 906.4530283 796559.5603 0.04602213 0.06827588 5.13E-06 5.28988714 0.222236657 S(ph)PS(ph)PAPPPRR ddPTM_HeLa_A486_30min_R1 3 SPSPAPPPRR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPPPRR;S(1)PS(1)PAPPPRR;S(1)PS(1)PAPPPRR ;; 93.959 0.0011716 861820000 362934 425122 343688 147003 464087 400778 457536 474680 360256 419502 TRUE FALSE FALSE 337494.2008 391433.7845 476773.1979 342230.4131 405876.881 351334.0852 343055.6535 366605.7262 391483.2801 314455.9687 1.073263777 1.244796803 1.516184284 1.088325385 1.290727229 1.117275931 1.090949728 1.165841207 1.244954204 1 18.26249849 -6.269730639 24.07296752 1.132115875 1.24939994 0.175602418 0.127715055 719.0194448 2087603.184 0.044890415 0.040290064 5.37E-07 6.269730639 0.117284064 S(ph)PS(ph)PASGR ddPTM_HeLa_A485_30min_R1 4 SPSPASGR 8 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PS(0.964)PAS(0.037)GR;S(1)PS(0.83)PAS(0.17)GR;S(1)PS(0.998)PAS(0.002)GR;S(1)PS(0.998)PAS(0.002)GR ;;; 131.46 0.0011149 3597790000 2973240 2864760 1555600 5152780 1530590 2752630 2196560 2039130 2671990 4417670 TRUE FALSE FALSE 3634626.98 3199768.762 2131081.174 5434263.324 1378199.085 2896753.45 1727247.012 1539030.17 3208233.884 3316426.17 1.0959469 0.964824361 0.642583632 1.638590171 0.415567546 0.873456336 0.520815759 0.464062847 0.967376845 1 21.66119798 -5.812614739 24.99999984 0.679109008 1.045246366 0.272713696 0.297965161 138.2547012 67538.80528 0.088783358 0.100670984 1.54E-06 5.812614739 0.366137357 S(ph)PS(ph)PASGR ddPTM_HeLa_A486_30min_R1 3 SPSPASGR 8 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PS(0.999)PAS(0.001)GR;S(1)PS(0.97)PAS(0.03)GR;S(1)PS(0.997)PAS(0.003)GR ;; 127.93 0.0012074 1841060000 1768590 931520 813980 370810 715180 1760610 907900 861340 2200840 2035580 TRUE FALSE FALSE 1644620.974 857702.9627 1129174.855 863264.4197 625475.4556 1543403.839 680733.8172 665231.6849 2391610.583 1525857.519 1.077833909 0.562112093 0.740026406 0.5657569 0.40991734 1.011499318 0.446131968 0.435972348 1.567387881 1 20.54118882 -7.757576649 24.99999931 1.283693995 0.649439812 0.494908045 0.253511758 70.95024822 459221.5421 0.177943962 0.061543042 1.75E-08 7.757576649 -0.634254182 S(ph)PS(ph)PASGRR ddPTM_HeLa_A485_30min_R1 2 SPSPASGRR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PS(1)PAS(0.001)GRR;S(1)PS(1)PASGRR ; 66.84 0.007914 2328900000 399010 540020 258780 581720 272070 494980 444660 593280 410570 576780 TRUE FALSE FALSE 487768.3979 603170.6415 354513.4907 613497.8906 244981.7555 520896.3874 349654.7585 447777.1498 492967.633 432999.3608 1.12648757 1.393005847 0.818739062 1.416856342 0.565778561 1.202995742 0.807517955 1.034128893 1.138495059 1 18.72400537 -4.755055756 24.99805614 0.999314725 1.259746683 0.17148944 0.230059551 244.3087705 956679.3098 0.054446324 0.136812978 1.76E-05 4.755055756 0.260431959 S(ph)PS(ph)PASGRR ddPTM_HeLa_A486_30min_R1 2 SPSPASGRR 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PS(0.999)PAS(0.001)GRR;S(1)PS(1)PASGRR ; 49.934 0.023183 1357000000 720830 290030 382630 265680 232380 815050 393890 429940 527740 828180 TRUE FALSE FALSE 670303.5394 267046.9665 530794.5832 618516.4667 203232.7335 714497.4178 295334.5559 332052.0475 573484.9281 620798.3375 1.079744418 0.430167013 0.855019337 0.996324296 0.327373192 1.150933201 0.475733484 0.534879086 0.923786185 1 19.24376517 -7.961220373 10.66880939 0.999990559 0.726271816 0.105938148 0.272210478 0.868819197 232.3851849 0.246300272 0.063618845 1.09E-08 7.961220373 -0.273718743 S(ph)PS(ph)PEPIYNSEGK ddPTM_HeLa_A485_30min_R1 3 SPSPEPIYNSEGK 13 0 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK ;; 252.66 8.28E-41 1704950000 2048470 1635060 879010 2350830 1175010 1371370 1697440 1317750 1116800 2409320 TRUE FALSE FALSE 2504145.084 1826266.044 1204192.378 2479249.89 1058021.879 1443172.813 1334768.077 994569.7463 1340931.516 1808720.864 1.384483993 1.009700325 0.665770159 1.370720015 0.584955866 0.797896923 0.737962448 0.549874647 0.741370071 1 20.78653835 -1 0.522672394 0.740968091 23.42957049 0.377099843 0.225232604 121.9487161 1.217109806 0.115834382 3070.212216 0.1 1 22.6886024 S(ph)PS(ph)PEPIYNSEGK ddPTM_HeLa_A486_30min_R1 4 SPSPEPIYNSEGK 13 0 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK;S(1)PS(1)PEPIYNSEGK ;;; 269.05 8.62E-42 2408940000 4009600 3503670 1260880 1051950 1776390 3284530 3186550 2655940 2607240 4975610 TRUE FALSE FALSE 3728547.746 3226026.429 1749126.504 2448992.763 1553578.602 2879318.083 2389241.486 2051240.441 2833237.662 3729684.87 0.999695115 0.864959518 0.468974341 0.656621899 0.4165442 0.772000366 0.640601437 0.549976878 0.759645322 1 21.83062231 -8.019188285 20.77676173 1.000000017 0.663670083 0.26105988 0.166628727 194.6874313 210806.6292 0.166380174 0.042959173 9.57E-09 8.019188285 -0.336329934 S(ph)PS(ph)PEPIYNSEGKR ddPTM_HeLa_A485_30min_R1 2 SPSPEPIYNSEGKR 14 1 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 S(1)PS(0.999)PEPIYNS(0.001)EGKR;S(1)PS(1)PEPIYNSEGKR ; 91.317 0.00058201 1262920000 1102350 1134380 649910 1023940 794600 1030110 1286550 1209580 707580 1224690 TRUE FALSE FALSE 1347563.954 1267035.873 890338.754 1079875.249 715486.834 1084044.967 1011668.082 912928.6085 849584.8157 919397.3217 1.465703589 1.378115689 0.968393896 1.174546873 0.778212876 1.179082146 1.100360049 0.992964181 0.924067099 1 19.81032894 -4.700000984 5.063427617 1.020445082 1.440159885 0.673122675 0.113776988 0.108649042 5.434626438 0.028597329 0.078085873 2.00E-05 4.700000984 0.419714803 S(ph)PS(ph)PEPIYNSEGKR ddPTM_HeLa_A486_30min_R1 1 SPSPEPIYNSEGKR 14 1 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 S(1)PS(1)PEPIYNSEGKR 117.67 5.93E-05 753380000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)PS(ph)PEPR ddPTM_HeLa_A485_30min_R1 1 SPSPEPR 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 S(1)PS(1)PEPR 88.136 0.015085 406140000 316560 323250 228670 279940 205170 252110 274170 256770 214550 325900 TRUE FALSE FALSE 386977.6799 361051.2756 313264.5488 295232.4134 184742.5544 265310.0898 215591.3397 193796.7549 257608.217 244659.1277 1.58170138 1.475731884 1.280412268 1.206709172 0.755101827 1.084407078 0.881190666 0.792109237 1.052927064 1 17.90041358 -5.154657993 1.268257165 0.920642047 1.573156395 0.812870569 0.113632134 0.197881648 0.592398021 0.037313321 0.11026243 7.00E-06 5.154657993 0.652514348 S(ph)PS(ph)PEPR ddPTM_HeLa_A486_30min_R1 2 SPSPEPR 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 S(1)PS(1)PEPR;S(1)PS(1)PEPR ; 76.1 0.033336 666560000 504680 512920 288170 108380 269060 376700 355390 313060 357950 560300 TRUE FALSE FALSE 469304.5382 472274.3512 399757.1415 252314.1172 235311.9859 330226.584 266467.6631 241783.0721 388977.3942 419997.2331 1.117399119 1.124470149 0.951808988 0.600751856 0.560270324 0.786258951 0.634450997 0.575677774 0.926142754 1 18.6800203 -5.038330565 3.618941667 0.701331757 1.11372354 0.559721329 0.141128951 0.148920989 4.046226105 0.037587445 0.07576603 9.16E-06 5.038330565 0.412391782 S(ph)PS(ph)PFTHTHLAQGYR ddPTM_HeLa_A485_30min_R1 3 SPSPFTHTHLAQGYR 15 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 2 0 S(1)PS(0.804)PFT(0.194)HT(0.002)HLAQGYR;S(1)PS(0.988)PFT(0.012)HTHLAQGYR;S(0.999)PS(0.89)PFT(0.111)HT(0.001)HLAQGYR ;; 136.35 8.17E-06 1366510000 564510 678950 590410 585150 691130 578980 738390 677460 586710 724450 TRUE FALSE FALSE 690083.302 758347.2964 808827.228 617115.2628 622318.6705 609294.4975 580626.9444 511311.8728 704457.3154 543857.9475 1.268866816 1.394384875 1.487203105 1.134699356 1.144266942 1.120319194 1.067607722 0.94015703 1.295296536 1 19.05287035 -5.363859418 5.526123171 1.096004512 1.383385827 0.624796212 0.100779648 0.14201151 6.265155503 0.028157985 0.042213106 4.33E-06 5.363859418 0.287381315 S(ph)PS(ph)PFTHTHLAQGYR ddPTM_HeLa_A486_30min_R1 4 SPSPFTHTHLAQGYR 15 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 2 0 S(1)PS(0.964)PFT(0.033)HT(0.003)HLAQGYR;S(1)PS(0.9)PFT(0.1)HT(0.001)HLAQGYR;S(1)PS(0.942)PFT(0.057)HT(0.001)HLAQGYR;S(1)PS(0.987)PFT(0.011)HT(0.001)HLAQGYR ;;; 129.11 1.97E-05 1962410000 1023700 1060150 729550 295227 955940 912280 982980 960960 863600 1118880 TRUE FALSE FALSE 951943.9164 976139.853 1012051.298 687303.3759 836037.0914 799732.169 737028.0071 742170.3856 938457.5433 838705.1653 1.13501616 1.163865317 1.206683039 0.819481511 0.996818818 0.953531947 0.87876889 0.88490022 1.118936167 1 19.67780422 -5.247235691 24.98825949 0.944638854 1.168055905 0.615050636 0.079005964 502.9047988 884748.9621 0.020937007 0.036041912 5.66E-06 5.247235691 0.223417051 S(ph)PS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_HeLa_A485_30min_R1 2 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 2 0 S(0.996)PS(0.929)PGPNHT(0.036)S(0.031)NS(0.007)S(0.001)NASNATVVPQNSSAR;S(1)PS(0.999)PGPNHTSNSSNASNATVVPQNSSAR ; 162.58 8.44E-14 1032350000 76216 169219 163173 39389 168499 90917 93603 95265 139435 48609 TRUE FALSE FALSE 93169.98626 189007.69 223537.4829 41540.72133 151722.6479 95677.27354 73603.95438 71901.10938 167418.3255 36491.67088 2.553184987 5.179474808 6.125712457 1.138361723 4.157733649 2.621893468 2.017006966 1.97034303 4.587850364 1 15.15527959 -5.26135608 25 2.593606047 4.675459107 0.334239681 1.366157489 8.71914857 2616422.022 0.368962211 0.590005295 5.48E-06 5.26135608 2.08185306 S(ph)PS(ph)PKPR ddPTM_HeLa_A485_30min_R1 3 SPSPKPR 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PS(1)PKPR;S(1)PS(1)PKPR;S(1)PS(1)PKPR ;; 76.465 0.01728 600770000 675570 328743 166305 1365720 223203 521830 425450 417070 366040 1092730 TRUE FALSE FALSE 825848.2158 367186.6342 227828.14 1440325.825 200980.1256 549152.2119 334549.1319 314782.9286 439500.8705 820332.5212 1.00672373 0.447607067 0.277726573 1.755782915 0.244998364 0.669426358 0.407821369 0.383726014 0.535759414 1 19.6458493 S(ph)PS(ph)PKPR ddPTM_HeLa_A486_30min_R1 2 SPSPKPR 7 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)PS(1)PKPR;S(1)PS(1)PKPR ; 72.643 0.020821 507830000 176783 99430 87443 65371 84579 254320 136276 130958 198487 327640 TRUE FALSE FALSE 164391.4246 91550.80468 121303.2714 152186.9917 73970.31315 222944.5841 102178.3034 101141.7222 215692.013 245596.8114 0.669354882 0.372768702 0.493912241 0.61966192 0.301185967 0.907766607 0.416040839 0.411820176 0.878236211 1 17.9059323 -7.885032217 4.863245012 0.992935864 0.523802957 0.503277556 0.166523795 0.154564321 5.425838295 0.153125805 0.040087869 1.30E-08 7.885032217 -0.469132907 S(ph)PS(ph)PKPTK ddPTM_HeLa_A485_30min_R1 1 SPSPKPTK 8 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 S(0.999)PS(0.988)PKPT(0.013)K 72.652 0.016268 2755700000 1119100 562440 207310 2840500 318190 895380 880070 986590 557800 2521700 TRUE FALSE FALSE 1368039.934 628212.4654 284002.5959 2995669.322 286509.8864 942260.7123 692035.855 744627.2556 669745.3436 1893086.598 0.722650477 0.331845604 0.150020921 1.582425931 0.151345367 0.497737775 0.365559534 0.393340303 0.353784842 1 20.85230898 -10.23864477 5.669751067 1.000023946 0.50348258 0.124766729 0.392956084 0.000116582 1.57E-05 0.372914699 0.090440746 5.77E-11 10.23864477 -0.496541366 S(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_HeLa_A485_30min_R1 2 SPSPLRGNVVPSPLPTR 17 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(1)PS(1)PLRGNVVPS(0.998)PLPT(0.002)R;S(1)PS(1)PLRGNVVPS(0.999)PLPT(0.001)R ; 112.88 0.00025177 959630000 184033 206529 180625 208960 218680 198178 246850 213484 188753 272950 TRUE FALSE FALSE 224970.5059 230680.77 247445.7039 220374.9557 196907.4514 208554.2936 194108.4809 161126.7143 226633.9958 204908.5883 1.097906671 1.125774044 1.207590692 1.075479352 0.960952652 1.017791862 0.947293047 0.786334607 1.106024875 1 17.64462093 -5.633477983 3.314273532 0.959491993 1.142634856 0.492229254 0.079712611 0.194864642 4.218867861 0.024383223 0.032483325 2.33E-06 5.633477983 0.183142863 S(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_HeLa_A486_30min_R1 2 SPSPLRGNVVPSPLPTR 17 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(0.999)PS(0.998)PLRGNVVPS(0.991)PLPT(0.012)R;S(1)PS(1)PLRGNVVPS(0.912)PLPT(0.088)R ; 118.54 0.00066711 236530000 190246 221435 144080 86057 196776 180296 222723 206188 183480 238872 TRUE FALSE FALSE 176910.7378 203887.6841 199871.6346 200345.0451 172094.5192 158052.9126 166995.3497 159243.4935 199384.1941 179056.8964 0.988014097 1.138675406 1.116246504 1.118890415 0.961116397 0.882696594 0.932638469 0.88934577 1.113524238 1 17.45005856 -5.770944863 20.79773197 0.95213196 1.095742955 0.422401112 0.072088704 21.87332109 47857.7654 0.021947124 0.025331562 1.69E-06 5.770944863 0.143610995 S(ph)PS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_HeLa_A485_30min_R1 1 SPSPLRGNVVPSPLPTRR 18 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(1)PS(1)PLRGNVVPS(0.959)PLPT(0.041)RR 67.496 0.0076425 231820000 40583 69253 51856 34091 60359 63325 69778 93451 44116 41569 TRUE FALSE FALSE 49610.54834 77351.53593 71039.69231 35953.30501 54349.44603 66640.59908 54869.36027 70531.99572 52969.67654 31206.61332 1.589744707 2.478690499 2.27643069 1.152105313 1.741600265 2.135463993 1.758260651 2.260161812 1.697386256 1 14.92956418 -8.020907192 23.0385172 0.999999981 1.927421083 0.362668731 0.368508945 636.5609504 701454.4163 0.364322061 0.094067552 9.53E-09 8.020907192 0.927421102 S(ph)PS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_HeLa_A486_30min_R1 3 SPSPLRGNVVPSPLPTRR 18 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(1)PS(1)PLRGNVVPS(0.996)PLPT(0.004)RR;S(1)PS(1)PLRGNVVPS(0.785)PLPT(0.215)RR;S(1)PS(1)PLRGNVVPS(0.963)PLPT(0.037)RR ;; 110.94 0.00010267 1956250000 867985 885340 644272 325520 955840 679989 963143 945119 557104 1016440 TRUE FALSE FALSE 807143.7338 815182.434 893751.3726 757827.0109 835949.6343 596098.8708 722154.4343 729936.0355 605394.2233 761916.8081 1.059359401 1.069910029 1.17303013 0.994632226 1.097166548 0.782367398 0.94781271 0.9580259 0.794567355 1 19.53927396 -6.240716043 24.78535007 0.897134916 1.078881539 0.591705461 0.075701204 509.0680304 608851.5691 0.02410716 0.024080621 5.74E-07 6.240716043 0.181746623 S(ph)PS(ph)PLRGNVVPSPLPT(ph)RR ddPTM_HeLa_A485_30min_R1 1 SPSPLRGNVVPSPLPTRR 18 2 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(1)PS(1)PLRGNVVPS(0.316)PLPT(0.685)RR 74.456 0.0060587 1118500000 265660 481000 354800 242260 466900 474320 538880 670390 284790 324710 TRUE FALSE FALSE 324755.1505 537248.7659 486055.2845 255494.0504 420413.7966 499154.6618 423743.8858 505975.8014 341944.7408 243765.7728 1.332242614 2.203954885 1.993943936 1.048112897 1.724662949 2.047681493 1.738323969 2.075663845 1.402759447 1 17.89513605 -8.005037722 6.651270526 1.000168591 1.773977391 0.347443841 0.335439576 0.127498068 34.72822536 0.326209226 0.084530788 9.88E-09 8.005037722 0.773808801 S(ph)PS(ph)PLRGNVVPSPLPTR ddPTM_HeLa_A485_30min_R1 2 SPSPLRGNVVPSPLPTR 17 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 S(1)PS(1)PLRGNVVPSPLPTR;S(1)PS(1)PLRGNVVPSPLPTR ; 71.592 0.0079479 463910000 187624 176359 164214 252730 197393 166867 221380 190281 152636 268380 TRUE FALSE FALSE 229360.3115 196982.6509 224963.5921 266536 177739.8598 175603.8981 174080.3545 143614.2864 183268.6451 201477.8052 1.138389965 0.977689085 1.116567614 1.32290502 0.882180842 0.871579368 0.864017525 0.712804501 0.909622005 1 17.62026139 -5.887746657 8.803041286 0.855901291 1.125342837 0.613025325 0.102754605 0.17882145 13.15719301 0.032443293 0.036830456 1.29E-06 5.887746657 0.269441546 S(ph)PS(ph)PLRGNVVPSPLPTR ddPTM_HeLa_A486_30min_R1 1 SPSPLRGNVVPSPLPTR 17 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 2 0 S(1)PS(1)PLRGNVVPSPLPTR 75.797 0.0059749 176990000 120700 155360 106150 57177 142710 121820 114380 136380 105740 148810 TRUE FALSE FALSE 112239.5533 143048.7078 147254.1228 133110.9456 124809.9811 106791.087 85760.91421 105329.2512 114905.6283 111547.0074 1.006208556 1.2824074 1.320108233 1.193317048 1.118900309 0.95736398 0.768832049 0.94425887 1.030109467 1 16.76729228 -6.132765141 2.599019435 0.923349253 1.212961712 0.60127274 0.100718255 0.192230899 2.530960148 0.037714907 0.037897613 7.37E-07 6.132765141 0.289612458 S(ph)PS(ph)PPPTR ddPTM_HeLa_A485_30min_R1 3 SPSPPPTR 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(0.999)PPPT(0.001)R;S(1)PS(1)PPPTR;S(1)PS(1)PPPTR ;; 89.029 0.0085941 17974200000 1158820 1337660 1280940 1462510 1753060 1304880 1728570 1543130 1284800 1917630 TRUE FALSE FALSE 1416595.511 1494087.701 1754813.01 1542403.218 1578519.191 1373201.499 1359246.898 1164674.948 1542647.575 1439600.132 0.984020131 1.037849099 1.218958634 1.071410861 1.096498365 0.95387703 0.944183644 0.809026702 1.071580601 1 20.45723671 -6.288013866 5.865142868 0.942216023 1.086559627 0.360493666 0.082862675 0.189429351 22.04457893 0.029264469 0.026442737 5.15E-07 6.288013866 0.144343605 S(ph)PS(ph)PPPTR ddPTM_HeLa_A486_30min_R1 3 SPSPPPTR 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PPPTR;S(1)PS(1)PPPTR;S(1)PS(1)PPPTR ;; 94.804 0.001848 772190000 660250 772240 598510 270771 807750 734640 809910 776680 647780 779600 TRUE FALSE FALSE 613969.8845 711044.89 830269.1007 630368.572 706434.463 644007.5861 607261.9516 599846.9188 703930.092 584383.0857 1.050629116 1.216744474 1.42076169 1.078690653 1.208855082 1.102029819 1.039150459 1.026461808 1.204569587 1 19.1565549 -6.219883252 1.680150217 1.068337504 1.211695782 0.239451342 0.106525843 0.540696715 3.025306078 0.045463317 0.04269838 6.03E-07 6.219883252 0.143358278 S(ph)PS(ph)PPPTRR ddPTM_HeLa_A485_30min_R1 3 SPSPPPTRR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PPPTRR;S(1)PS(0.997)PPPT(0.004)RR;S(1)PS(0.997)PPPT(0.003)RR ;; 52.555 0.020816 5300922800 302397.2 383649.6 348853.5 341172.7 422754.4 465249.1 474783.2 459261 319009.8 392499 TRUE FALSE FALSE 369664.4139 428514.0834 477908.9267 359810.1007 380663.4876 489608.8235 373341.8907 346626.5197 383032.1407 294656.2227 1.254561707 1.454284859 1.621920359 1.221118283 1.291890204 1.661627299 1.267042275 1.176376037 1.299928904 1 18.16867321 -7.939975131 0.737955443 1.008786599 1.414082086 0.39039294 0.149522692 0.725742784 0.912924546 0.14915294 0.058500927 1.15E-08 7.939975131 0.405295487 S(ph)PS(ph)PPPTRR ddPTM_HeLa_A486_30min_R1 1 SPSPPPTRR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(0.999)PPPT(0.001)RR 51.013 0.0068716 0 31789 36951 29127 14391 46660 32098 39899 39766 31233 44174 TRUE FALSE FALSE 29560.75526 34022.86819 40405.75445 33502.97528 40807.46771 28138.07511 29915.84819 30712.14989 33940.30159 33112.54288 0.892735885 1.027491858 1.220255255 1.011791073 1.23238701 0.849770892 0.903459704 0.927508044 1.024998343 1 15.01509019 -6.279658559 24.98365284 0.934261175 1.078528984 0.301866571 0.102968071 1027.882205 1409512.894 0.036505376 0.032255255 5.25E-07 6.279658559 0.144267809 S(ph)PS(ph)PPTQHTGQPPGQPSAPSQLSAPR ddPTM_HeLa_A486_30min_R1 1 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-2;I3L460;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 2 0 S(0.937)PS(0.812)PPT(0.226)QHT(0.025)GQPPGQPSAPSQLSAPR 53.867 0.0017755 0 30234 30982 17116 16295 30937 31679 34512 37734 20992 44816 TRUE FALSE FALSE 28114.75273 28526.87349 23743.77358 37935.5835 27056.59298 27770.76707 25876.73257 29142.79193 22811.60346 33593.7819 0.836903473 0.849171242 0.706790729 1.129244204 0.805404794 0.826663909 0.770283401 0.867505541 0.679042435 1 15.0359066 S(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A485_30min_R1 2 SPSPSPTPEAK 11 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 S(1)PS(0.893)PS(0.105)PT(0.002)PEAK;S(1)PS(0.699)PS(0.298)PT(0.002)PEAK ; 150.06 1.37E-06 2165870000 1285070 1015730 828970 2119340 1657170 1065290 1924150 1536270 1100260 2747990 TRUE FALSE FALSE 1570929.388 1134510.788 1135640.499 2235114.178 1492176.336 1121066.937 1513039.634 1159497.374 1321072.09 2062966.666 0.761490437 0.549941406 0.550489021 1.083446579 0.723315777 0.543424649 0.733429027 0.562053373 0.640374908 1 20.97628908 -10.28753515 3.021346238 1.002231738 0.682058685 0.271986536 0.155526997 23162914.34 30141840.04 471139.4326 0.040318449 5.16E-11 10.28753515 -0.320173053 S(ph)PS(ph)PSPTPEAK ddPTM_HeLa_A486_30min_R1 4 SPSPSPTPEAK 11 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 S(1)PS(0.931)PS(0.069)PTPEAK;S(1)PS(0.948)PS(0.051)PTPEAK;S(1)PS(0.93)PS(0.068)PT(0.002)PEAK;S(1)PS(0.892)PS(0.107)PT(0.002)PEAK ;;; 204.32 1.84E-14 6165820000 2718350 3445730 1745100 1656000 3135780 3916570 4643050 4278600 2550920 4295800 TRUE FALSE FALSE 2527807.703 3172677.806 2420849.455 3855251.69 2742461.232 3433383.414 3481309.781 3304456.181 2772035.8 3220103.719 0.785008162 0.98527193 0.751792385 1.197244569 0.851668602 1.066233797 1.081117282 1.026195573 0.860852954 1 21.61867573 -5.241066132 24.99925726 1.011464753 0.855148951 0.33042607 0.111115597 1015.431191 1245996.308 0.028646266 0.049545217 5.74E-06 5.241066132 -0.156315802 S(ph)PS(ph)PTLGESLAPHK ddPTM_HeLa_A485_30min_R1 3 SPSPTLGESLAPHK 14 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 S(1)PS(0.988)PT(0.012)LGESLAPHK;S(1)PS(0.913)PT(0.087)LGESLAPHK;S(1)PS(0.983)PT(0.018)LGESLAPHK ;; 209.31 3.29E-22 548530000 873310 778730 696860 809540 1082740 760990 1047810 797460 887420 1378470 TRUE FALSE FALSE 1067574.797 869795.6994 954657.5128 853763.1203 974938.6039 800834.2597 823936.8337 601881.6846 1065517.054 1034842.798 1.031629924 0.84050998 0.922514526 0.825017212 0.942112759 0.773870448 0.796195166 0.581616537 1.029641465 1 19.9809802 -6.262992532 24.90993323 0.807611409 0.904077496 0.056642075 0.129228778 299.1575269 4797954.413 0.042245746 0.039244318 5.46E-07 6.262992532 0.096466087 S(ph)PS(ph)PTLGESLAPHK ddPTM_HeLa_A486_30min_R1 4 SPSPTLGESLAPHK 14 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 S(1)PS(0.986)PT(0.014)LGESLAPHK;S(1)PS(0.993)PT(0.007)LGESLAPHK;S(1)PS(0.991)PT(0.009)LGESLAPHK;S(1)PS(0.983)PT(0.017)LGESLAPHK ;;; 211.17 2.30E-22 897670000 834010 954100 557135 97137 870370 898710 1021170 943250 790500 765840 TRUE FALSE FALSE 775550.2058 878493.6412 772872.5926 226139.845 761200.0787 787836.2976 765662.4652 728492.566 859021.1765 574068.6792 1.350971119 1.530293627 1.346306845 0.393924722 1.325973888 1.372372899 1.333747151 1.268998976 1.496373531 1 19.13086382 S(ph)PS(ph)PYYSR ddPTM_HeLa_A485_30min_R1 8 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 S(0.995)PS(0.878)PY(0.126)YSR;S(0.99)PS(0.805)PY(0.2)Y(0.005)SR;S(1)PS(0.993)PY(0.007)YSR;S(0.999)PS(0.992)PY(0.008)YSR;S(0.996)PS(0.926)PY(0.077)YSR;S(1)PS(0.998)PY(0.002)YSR;S(0.999)PS(0.992)PY(0.009)YSR;S(0.992)PS(0.747)PY(0.261)YSR ;;;;;;; 109.15 0.0026368 25368260000 5145330 4755340 5498230 7673890 8048730 4673510 6660360 5707030 5340650 9193720 TRUE FALSE FALSE 6289890.907 5311435.647 7532254.077 8093095.179 7247370.18 4918207.757 5237319.676 4307371.944 6412469.468 6901894.802 0.911328133 0.769561954 1.091331336 1.172590341 1.05005515 0.71258805 0.758823457 0.624085424 0.929088265 1 22.71856105 -6.258791226 24.96880482 0.778541527 1.001004692 0.309832667 0.142097732 272.207554 2566586.034 0.050440517 0.048263489 5.51E-07 6.258791226 0.222463165 S(ph)PS(ph)PYYSR ddPTM_HeLa_A486_30min_R1 6 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 0 S(0.999)PS(0.995)PY(0.005)Y(0.001)S(0.001)R;S(0.999)PS(0.989)PY(0.004)YS(0.008)R;S(1)PS(0.989)PY(0.011)YSR;S(1)PS(0.996)PY(0.002)Y(0.001)S(0.001)R;S(1)PS(0.989)PY(0.011)YSR;S(1)PS(0.97)PY(0.028)Y(0.002)S(0.001)R ;;;;; 114.89 0.0020951 30862500000 7468800 13367600 9786340 4619770 14148110 12557280 14073540 14139240 10040310 10951050 TRUE FALSE FALSE 6945275.689 12308302.69 13575872.94 10755058.03 12373522.12 11008090.47 10552191.44 10920043.71 10910612.15 8208835.801 0.846073165 1.499396868 1.653812217 1.310180675 1.507341896 1.341005075 1.285467476 1.330279223 1.329130271 1 22.9687462 -9.031285907 0.634410921 0.979522925 1.374956202 0.205977064 0.200579956 7.4603283 3.346414993 0.590938975 0.079260313 9.30E-10 9.031285907 0.395433277 S(ph)PS(ph)VSPSKQPVSTSSK ddPTM_HeLa_A486_30min_R1 1 SPSVSPSKQPVSTSSK 16 1 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 2 0 S(0.999)PS(0.882)VS(0.108)PS(0.01)KQPVSTSSK 101.64 0.00046837 400950000 566460 556520 148560 256140 340830 636670 697240 604460 388190 946300 TRUE FALSE FALSE 526754.0792 512419.3284 206086.4106 596306.8646 298079.9233 558124.1286 522783.1773 466837.6533 421838.6218 709340.3206 0.74259712 0.722388554 0.290532491 0.840649893 0.420221316 0.786821378 0.736999099 0.658129306 0.594691447 1 19.43611843 -6.364033761 23.96387876 0.73281616 0.60544661 0.147105286 0.178959647 61.63364876 14375.67812 0.060763383 0.053588269 4.32E-07 6.364033761 -0.12736955 S(ph)PS(ph)YGR ddPTM_HeLa_A485_30min_R1 2 SPSYGR 6 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 S(1)PS(1)YGR;S(1)PS(1)YGR ; 93.143 0.03054 24204000000 5762000 6292100 4106200 6724900 3418100 4773000 5490600 4786300 5116200 7514800 TRUE FALSE FALSE 7043737.021 7027906.361 5625254.253 7092264.259 3077781.962 5022906.9 4317488.456 3612452.42 6142974.411 5641498.66 1.248557776 1.245751667 0.997120551 1.257159611 0.545561055 0.890349746 0.76530878 0.640335598 1.08889052 1 22.42764703 -5.743247819 24.99999657 0.804366525 1.17776016 0.54048869 0.16449977 180.71563 248349.7962 0.046570761 0.060003334 1.81E-06 5.743247819 0.373393636 S(ph)PS(ph)YGR ddPTM_HeLa_A486_30min_R1 3 SPSYGR 6 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 S(1)PS(1)YGR;S(1)PS(1)YGR;S(1)PS(1)YGR ;; 104.06 0.022139 35235500000 15742600 12136700 8014700 3297740 6295400 13468600 9542900 8110900 13469500 17499500 TRUE FALSE FALSE 14639125.03 11174943.69 11118206.48 7677305.379 5505772.23 11806981.07 7155165.485 6264225.13 14637047.11 13117511.3 1.11599866 0.851910354 0.847585051 0.58527149 0.419726891 0.900093074 0.545466691 0.477546768 1.115840252 1 23.6449907 -4.389197141 1.47720389 0.69279217 1.207115098 0.207011482 0.220313741 1.26260889 3.084544032 0.061861171 0.889751625 4.08E-05 4.389197141 0.514322928 S(ph)PS(ph)YGRS(ph)R ddPTM_HeLa_A486_30min_R1 1 SPSYGRSR 8 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 S(1)PS(0.998)Y(0.045)GRS(0.957)R 62.924 0.0035442 0 12908 14441 19365 8736.8 23421 17612 18154 22814 12777 11689 TRUE FALSE FALSE 12003.21586 13296.64257 26863.64661 20339.71193 20483.31979 15439.21051 13611.67719 17619.75023 13884.52065 8761.998317 1.369917617 1.517535394 3.065926931 2.32135538 2.337745232 1.762064993 1.553490048 2.010928282 1.584629458 1 13.09704422 -6.424171584 4.881861622 1.625269037 2.150251729 0.22964813 0.496032792 0.408343906 15.57014659 0.190815004 0.165706947 3.77E-07 6.424171584 0.524982693 S(ph)PSAGDVHILTGFAK ddPTM_HeLa_A485_30min_R1 1 SPSAGDVHILTGFAK 15 0 A0A3B3ITL0;A0A3B3IRJ9;Q9Y2H2-4;Q9Y2H2 A0A3B3ITL0 INPP5F Phosphatidylinositide phosphatase SAC2 1 0 S(0.5)PS(0.5)AGDVHILTGFAK 99.891 0.00025488 0 79001 75884 81892 91495 101940 76237 79666 78139 81744 120310 TRUE FALSE FALSE 96574.4999 84757.9737 112187.2586 96493.14017 91790.49567 80228.65144 62644.70829 58975.28773 98149.271 90318.93114 1.069260881 0.938429769 1.242123409 1.068360076 1.01629298 0.888281675 0.693594438 0.652967069 1.086696551 1 16.46274079 -6.235295326 2.756469594 0.826365785 1.077440137 0.342557404 0.139177129 0.285840321 4.330168133 0.05159783 0.048725923 5.82E-07 6.235295326 0.251074352 S(ph)PSAGDVHILTGFAKPMDIYCHR ddPTM_HeLa_A486_30min_R1 2 SPSAGDVHILTGFAKPMDIYCHR 23 1 A0A3B3ITL0;A0A3B3IRJ9;Q9Y2H2-4;Q9Y2H2 A0A3B3ITL0 INPP5F Phosphatidylinositide phosphatase SAC2 1 0 S(0.5)PS(0.5)AGDVHILTGFAKPMDIYCHR;S(0.5)PS(0.5)AGDVHILTGFAKPMDIYCHR ; 162.27 1.87E-14 301310000 350810 349890 275230 134239 435490 350690 411940 434030 315510 400950 TRUE FALSE FALSE 326220.0306 322163.4421 381806.4269 312515.1761 380866.7834 307425.4334 308868.2549 335210.8438 342858.6608 300549.5103 1.085411952 1.071914713 1.270361168 1.039812628 1.26723475 1.022877838 1.02767845 1.115326535 1.140772649 1 18.19724314 S(ph)PSAGILR ddPTM_HeLa_A485_30min_R1 5 SPSAGILR 8 0 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 S(0.998)PS(0.002)AGILR;S(0.998)PS(0.002)AGILR;S(0.995)PS(0.005)AGILR;S(0.996)PS(0.004)AGILR;S(0.895)PS(0.105)AGILR ;;;; 125.25 0.00061354 1368060000 238880 273910 261602 250453 341239 254815 324654 330024 268382 375241 TRUE FALSE FALSE 292018.0319 305941.3918 358379.466 264134.6132 307264.047 268156.7194 255289.0207 249085.0965 322243.8057 281700.3245 1.036626537 1.086052678 1.272201112 0.937643979 1.090747934 0.95192194 0.906243261 0.884220126 1.143924155 1 18.1038017 -5.291192956 24.96992224 0.982384887 1.127069438 0.330500264 0.093507702 766.8138284 643527.0533 0.026534489 0.039363587 5.11E-06 5.291192956 0.14468455 S(ph)PSAGILR ddPTM_HeLa_A486_30min_R1 3 SPSAGILR 8 0 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 S(0.995)PS(0.005)AGILR;S(1)PSAGILR;S(0.999)PS(0.001)AGILR ;; 179.36 8.28E-06 670480000 222777 250831 215077 83560 270861 242265 289328 265971 231280 279474 TRUE FALSE FALSE 207161.4827 230954.238 298360.5744 194531.9029 236887.0877 212376.8075 216935.0742 205415.2094 251327.5366 209491.8913 0.988875901 1.102449534 1.42421061 0.928589177 1.130769722 1.013771016 1.035529694 0.980540145 1.199700547 1 17.67653488 S(ph)PSAIPEQNHSLNDQAK ddPTM_HeLa_A485_30min_R1 1 SPSAIPEQNHSLNDQAK 17 0 Q13129 Q13129 RLF Zinc finger protein Rlf 1 0 S(0.868)PS(0.132)AIPEQNHSLNDQAK 224.57 2.02E-34 698630000 348640 354300 264750 434580 435710 391390 547020 601670 326780 641580 TRUE FALSE FALSE 426193.7652 395732.303 362692.0422 458320.005 392329.1825 411882.5752 430144.7083 454109.4891 392361.7486 481645.9134 0.884869472 0.821624957 0.753026304 0.951570422 0.814559351 0.855156379 0.893072476 0.94282849 0.814626965 1 18.8776134 -14 0.14553341 1.500115174 0.812485193 0.354682728 0.057870091 146.2651173 1.28066658 21.09541263 0.313428921 1.00E-14 14 -0.687629981 S(ph)PSAIPEQNHSLNDQAK ddPTM_HeLa_A486_30min_R1 2 SPSAIPEQNHSLNDQAK 17 0 Q13129 Q13129 RLF Zinc finger protein Rlf 1 0 S(0.793)PS(0.207)AIPEQNHSLNDQAK;S(0.97)PS(0.03)AIPEQNHSLNDQAK ; 154.42 2.03E-08 545860000 588930 599020 323800 203661 516950 573230 689970 660140 388430 729450 TRUE FALSE FALSE 547649.0482 551551.4736 449184.0317 474133.1005 452109.3106 502510.7108 517332.2082 509840.5328 422099.4251 546790.9721 1.001569295 1.008706255 0.821491309 0.867119475 0.826841213 0.919017936 0.946124268 0.932423099 0.771957561 1 19.0606299 -4.742951612 24.82336787 0.883801809 1.005137907 0.358039231 0.06397682 235.9186724 316760.5623 0.016051117 0.042292175 1.81E-05 4.742951612 0.121336098 S(ph)PSAPAATSSASSSTSSYK ddPTM_HeLa_A485_30min_R1 1 SPSAPAATSSASSSTSSYK 19 0 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.5)PS(0.5)APAATSSASSSTSSYK 237.89 1.59E-45 248230000 116220 121990 116960 135240 146890 133750 153330 150810 126500 209260 TRUE FALSE FALSE 142072.738 136255.6693 160228.3711 142627.8188 132265.1158 140752.9432 120569.7929 113823.611 151887.3897 157095.3331 0.904372747 0.867343839 1.019943546 0.907906148 0.841941725 0.895971512 0.767494428 0.724551193 0.966848516 1 17.2612808 -5.667423238 4.767022603 0.84897371 0.929959543 0.084203707 0.085944648 0.40403913 15.67907445 0.025720154 0.033271761 2.15E-06 5.667423238 0.080985832 S(ph)PSAPAATSSASSSTSSYK ddPTM_HeLa_A486_30min_R1 3 SPSAPAATSSASSSTSSYK 19 0 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.999)PS(0.001)APAATSSASSSTSSYK;S(0.5)PS(0.5)APAATSSASSSTSSYK;S(0.992)PS(0.008)APAATSSASSSTSSYK ;; 349.85 1.34E-115 539700000 149509 166219 90912 55855 159415 168507 186727 201338 142798 191319 TRUE FALSE FALSE 139029.1912 153047.2011 126115.5611 130033.2628 139419.6842 147718.3196 140005.9296 155497.7326 155175.8456 143411.4771 0.969442572 1.06718935 0.87939657 0.906714479 0.972165457 1.030031365 0.976253313 1.084276766 1.082032266 1 17.12980096 -6.743339189 1.365257958 1.05652812 0.959418848 0.319951599 0.055111303 0.528106282 1.99322979 0.035526402 0.02108154 1.81E-07 6.743339189 -0.097109272 S(ph)PSAPAATSSASSSTSSYKR ddPTM_HeLa_A485_30min_R1 2 SPSAPAATSSASSSTSSYKR 20 1 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.887)PS(0.113)APAATSSASSSTSSYKR;S(0.987)PS(0.013)APAATSSASSSTSSYKR ; 140.2 3.15E-08 1265710000 282338 343570 284695 273335 390960 369110 408520 478720 282100 401470 TRUE FALSE FALSE 345143.114 383747.5228 390015.5276 288266.5989 352034.6497 388436.0288 321236.3647 361313.1694 338714.8824 301390.9175 1.145167601 1.2732551 1.294052027 0.956454167 1.168033372 1.288811329 1.065846202 1.198819037 1.12383905 1 18.20127642 -13.99999999 0.155269831 0.375250109 1.219622877 0.224023283 0.098742483 213.814479 1.936036042 41.08092513 0.467854447 1.00E-14 13.99999999 0.844372768 S(ph)PSAPAATSSASSSTSSYKR ddPTM_HeLa_A486_30min_R1 2 SPSAPAATSSASSSTSSYKR 20 1 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.796)PS(0.204)APAATSSASSSTSSYKR;S(0.994)PS(0.006)APAATSSASSSTSSYKR ; 102.67 6.40E-05 1625340000 478220 483580 357680 172350 534030 463410 589570 555020 405640 542060 TRUE FALSE FALSE 444699.2475 445259.3596 496183.275 401239.5101 467046.9778 406239.1858 442053.3502 428654.062 440801.2018 406324.6478 1.094443199 1.095821684 1.221149831 0.987485038 1.149442891 0.999789671 1.087931418 1.054954614 1.084849773 1 18.63227336 -5.269863396 24.99566363 1.057728287 1.133006585 0.31581246 0.05685922 774.3031782 2297501.8 0.015079989 0.022774701 5.37E-06 5.269863396 0.075278298 S(ph)PSAS(ph)ITDEDSNV ddPTM_HeLa_A486_30min_R1 1 SPSASITDEDSNV 13 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;H0YFE4 Q86W92-2 PPFIBP1 Liprin-beta-1 2 0 S(0.95)PS(0.128)AS(0.921)IT(0.001)DEDSNV 141.59 2.41E-07 130530000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)PSDEYKDNLHQVSK ddPTM_HeLa_A485_30min_R1 1 SPSDEYKDNLHQVSK 15 1 Q9UKD2 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog 1 0 S(0.832)PS(0.168)DEYKDNLHQVSK 132.13 9.33E-06 256930000 549420 335340 251520 930780 514290 454050 765860 559330 416370 1187100 TRUE FALSE FALSE 671636.5835 374555.0959 344567.7146 981626.1545 463085.4818 477823.3559 602227.7545 422153.4405 499931.6398 891177.817 0.753650473 0.420292212 0.386643056 1.101493031 0.519633089 0.536170612 0.675766096 0.473702815 0.56097855 1 19.7653538 -10.18642502 4.501707975 1.000086816 0.599961492 0.268116032 0.196639056 267194673 39.96337032 241015.6219 0.047399271 6.51E-11 10.18642502 -0.400125324 S(ph)PSDLHIS(ph)PLAK ddPTM_HeLa_A485_30min_R1 2 SPSDLHISPLAK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 2 0 S(0.997)PS(0.003)DLHIS(1)PLAK;S(0.996)PS(0.004)DLHIS(1)PLAK ; 150.39 1.20E-07 254929000 482950 517360 390130 546990 713920 540660 669700 775050 463730 735050 TRUE FALSE FALSE 590380.5613 577860.7516 534455.3217 576870.6786 642839.6181 568968.1216 526613.1241 584967.7723 556796.3574 551815.5626 1.069887479 1.047199084 0.968539777 1.045404874 1.164953767 1.031083862 0.954328148 1.060078425 1.009026195 1 19.07382662 -7.901850645 6.101091886 1.000303191 1.041119709 0.07365635 0.054301408 0.617079869 29.57704996 0.055347244 0.014371655 1.25E-08 7.901850645 0.040816518 S(ph)PSDLHIS(ph)PLAK ddPTM_HeLa_A486_30min_R1 4 SPSDLHISPLAK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 2 0 S(0.991)PS(0.009)DLHIS(1)PLAK;S(0.993)PS(0.007)DLHIS(1)PLAK;S(0.996)PS(0.004)DLHIS(1)PLAK;S(0.986)PS(0.014)DLHIS(1)PLAK ;;; 135.23 1.56E-05 428680000 663930 671510 423846 234868 672780 710510 783690 774730 532900 823430 TRUE FALSE FALSE 617391.9355 618297.102 587970.5222 546784.5736 588393.659 622854.5001 587602.473 598340.8912 579092.2011 617237.7684 1.000249769 1.001716249 0.952583514 0.885857285 0.953269047 1.009099786 0.951987229 0.969384769 0.938199557 1 19.23546682 S(ph)PSDSGYSYETIGK ddPTM_HeLa_A485_30min_R1 4 SPSDSGYSYETIGK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(1)PSDSGYSYETIGK;S(0.993)PS(0.007)DSGYSYETIGK;S(1)PSDSGYSYETIGK;S(0.999)PS(0.001)DSGYSYETIGK ;;; 434.76 7.98E-163 6537100000 2905640 2564770 1990560 3143800 2705380 2357250 3105680 2597040 2361380 3805250 TRUE FALSE FALSE 3551989.594 2864697.541 2726950.978 3315537.833 2436022.868 2480671.965 2442126.097 1960111.868 2835287.306 2856671.205 1.243401616 1.002809681 0.954590424 1.160629836 0.852748774 0.868378538 0.854885257 0.686152423 0.9925144 1 21.44590357 -5.775055934 24.941031 0.858672668 1.074406764 0.466366991 0.111026889 196.278388 359515.7838 0.033648804 0.038359777 1.68E-06 5.775055934 0.215734095 S(ph)PSDSGYSYETIGK ddPTM_HeLa_A486_30min_R1 6 SPSDSGYSYETIGK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.995)PS(0.005)DSGYSYETIGK;S(0.998)PS(0.002)DSGYSYETIGK;S(0.995)PS(0.005)DSGYSYETIGK;S(1)PSDSGYSYETIGK;S(0.998)PS(0.002)DSGYSYETIGK;S(0.999)PS(0.001)DSGYSYETIGK ;;;;; 435.55 5.68E-163 8760470000 3669220 3989650 2028589 1019257 2459940 3382760 3539490 3118200 2831520 4058840 TRUE FALSE FALSE 3412026.626 3673495.604 2814112.988 2372881.806 2151391.387 2965429.465 2653872.165 2408253.93 3076958.433 3042480.045 1.121462286 1.207401708 0.924940491 0.779916966 0.707117666 0.974675074 0.872272661 0.791543048 1.01133233 1 21.53681637 -4.847907028 4.810830321 0.864337468 1.163906254 0.574452404 0.09698351 0.127812894 5.093041012 0.025472062 0.056812622 1.42E-05 4.847907028 0.299568786 S(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_A485_30min_R1 4 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 S(0.822)PS(0.176)DS(0.002)STASTPVAEQIER;S(0.919)PS(0.078)DS(0.003)STASTPVAEQIER;S(0.794)PS(0.205)DS(0.001)STASTPVAEQIER;S(0.498)PS(0.498)DS(0.004)STASTPVAEQIER ;;; 277.34 3.98E-69 6896800000 347001 385489 376838 363429 398481 300587 377966 289216 333512 479241 TRUE FALSE FALSE 424190.1753 430568.5852 516246.0577 383282.206 358806.8325 316325.2705 297210.4764 218285.3225 400444.7992 359775.0385 1.179042818 1.196771702 1.434913495 1.065338517 0.997308857 0.879230732 0.826100881 0.606727258 1.113042197 1 18.45673557 -5.733837847 1.923442073 0.860716537 1.261043158 0.563946775 0.142787047 0.226362792 1.725290259 0.048390225 0.064603689 1.85E-06 5.733837847 0.400326621 S(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_A486_30min_R1 2 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 S(0.5)PS(0.5)DSSTASTPVAEQIER;S(0.79)PS(0.204)DS(0.006)STASTPVAEQIER ; 396.72 7.04E-146 1636010000 119733 186175 132601 31973 153620 146811 159314 142062 130223 151638 TRUE FALSE FALSE 111340.335 171421.815 183947.6584 74434.75983 134351.5472 128698.9515 119451.9521 109717.5838 141510.8345 113666.8578 0.979532092 1.508107273 1.618305124 0.654850158 1.181976433 1.132246936 1.050895173 0.965255712 1.24496126 1 16.79445214 -5.244720151 24.98036505 1.042538777 1.382594043 0.338427059 0.21456751 929.4025957 1388627.619 0.057191231 0.098714759 5.69E-06 5.244720151 0.340055266 S(ph)PSEARQDVDLCLVSSCEYKHPK ddPTM_HeLa_A485_30min_R1 4 SPSEARQDVDLCLVSSCEYKHPK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.894)PS(0.106)EARQDVDLCLVSSCEYKHPK;S(0.904)PS(0.096)EARQDVDLCLVSSCEYKHPK;S(0.712)PS(0.288)EARQDVDLCLVSSCEYKHPK;S(0.803)PS(0.197)EARQDVDLCLVSSCEYKHPK ;;; 153.06 4.22E-10 1516010000 300763 458610 302337 304231 727490 679050 950680 1467090 372919 540400 TRUE FALSE FALSE 367666.6917 512240.4501 414184.0376 320850.3692 655058.5412 714604.008 747559.4517 1107283.877 447760.4227 405688.2253 0.906278932 1.262645594 1.020941728 0.790879176 1.614684628 1.761461052 1.842694476 2.729396142 1.103705739 1 18.6300119 -5.890939191 4.926084346 1.793702256 1.019043492 0.331882704 0.459849726 0.21908171 8.601444575 0.140793343 0.160976493 1.29E-06 5.890939191 -0.774658765 S(ph)PSEARQDVDLCLVSSCEYKHPK ddPTM_HeLa_A486_30min_R1 4 SPSEARQDVDLCLVSSCEYKHPK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.956)PS(0.044)EARQDVDLCLVSSCEYKHPK;S(0.966)PS(0.034)EARQDVDLCLVSSCEYKHPK;S(0.979)PS(0.021)EARQDVDLCLVSSCEYKHPK;S(0.988)PS(0.012)EARQDVDLCLVSSCEYKHPK ;;; 153.77 3.78E-10 1183170000 383234 302085 245772 283278 571407 330283 580456 611700 212330 550510 TRUE FALSE FALSE 356371.2756 278146.6844 340941.5004 659485.5001 499735.8059 289536.0415 435219.7694 472429.2633 230734.9354 412658.7128 0.863598089 0.674035652 0.82620696 1.598137831 1.211014794 0.701635595 1.054672435 1.144842575 0.559142284 1 18.65458958 -10.03595292 19.19635978 1 0.973835403 0 0.29183473 0 0 0.295956267 0.071779938 9.21E-11 10.03595292 -0.026164597 S(ph)PSELFAQHIVTIVHHVK ddPTM_HeLa_A485_30min_R1 1 SPSELFAQHIVTIVHHVK 18 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.873)PS(0.127)ELFAQHIVTIVHHVK 124.86 8.55E-06 714800000 124690 163350 137190 144380 173090 152510 182700 179660 141320 186230 TRUE FALSE FALSE 152426.8603 182452.3615 187942.29 152267.1138 155856.5518 160495.1878 143664.6525 135598.1033 169681.6277 139806.2883 1.090271848 1.305036875 1.344304982 1.089129221 1.114803588 1.14798261 1.02759793 0.969899888 1.213690956 1 17.09306973 -5.324516239 9.464048096 1.081028968 1.25226129 0.411978386 0.090858084 0.457726136 66.54232363 0.025590656 0.038007734 4.74E-06 5.324516239 0.171232322 S(ph)PSELFAQHIVTIVHHVK ddPTM_HeLa_A486_30min_R1 1 SPSELFAQHIVTIVHHVK 18 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.986)PS(0.014)ELFAQHIVTIVHHVK 278.52 2.42E-69 751780000 252740 258080 161450 66099 226310 236340 243620 239720 231410 272600 TRUE FALSE FALSE 235024.2312 237628.8009 223967.7638 153881.8125 197924.0895 207182.7737 182663.6993 185140.9891 251468.8051 204339.1857 1.15016721 1.162913516 1.096058806 0.753070499 0.968605649 1.013916019 0.893923986 0.906047406 1.23064406 1 17.64060637 -5.016769654 24.28378402 0.958855577 1.149776885 0.327573299 0.113231443 525.0396627 760302.877 0.030268229 0.054270948 9.62E-06 5.016769654 0.190921308 S(ph)PSFASEWDEIEK ddPTM_HeLa_A485_30min_R1 2 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.955)PS(0.045)FASEWDEIEK;S(0.557)PS(0.443)FASEWDEIEK ; 159.52 2.58E-09 101074000 56720 63289 54986 84410 78561 81694 115690 122118 58605 125430 TRUE FALSE FALSE 69337.16832 70690.09801 75327.60956 89021.10456 70739.191 85971.37152 90971.8864 92168.36903 70366.48594 94162.60937 0.736355638 0.750723652 0.799973685 0.945397596 0.751245016 0.913009655 0.966114756 0.978821314 0.747286916 1 16.52286668 -2.023994996 0.257883112 0.95014413 2.07E-12 0.39009955 0.082069199 31.18725348 0.682275746 0.103327666 11.66947228 0.009462481 2.023994996 -0.95014413 S(ph)PSFGAGEGLLR ddPTM_HeLa_A486_30min_R1 1 SPSFGAGEGLLR 12 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.894)PS(0.106)FGAGEGLLR 144.92 1.99E-07 180970000 120150 165520 133150 44738 170010 152190 172620 193770 121390 155320 TRUE FALSE FALSE 111728.1055 152403.5924 184709.2459 104152.3249 148685.7605 133414.3452 129428.6502 149652.801 131912.1829 116426.861 0.959641997 1.30900714 1.586483087 0.894572988 1.277074373 1.145906915 1.111673449 1.285380364 1.133004719 1 16.82906442 -5.274660076 24.99659103 1.140119753 1.287440418 0.144920582 0.178331372 1622.049597 3066833.077 0.049822465 0.07437835 5.31E-06 5.274660076 0.147320665 S(ph)PSFGDPQLS(ph)PEARPR ddPTM_HeLa_A485_30min_R1 5 SPSFGDPQLSPEARPR 16 1 O95425-3 O95425-3 SVIL Supervillin 2 0 S(0.999)PS(0.001)FGDPQLS(1)PEARPR;S(0.999)PS(0.001)FGDPQLS(1)PEARPR;S(1)PSFGDPQLS(1)PEARPR;S(0.986)PS(0.014)FGDPQLS(1)PEARPR;S(0.99)PS(0.01)FGDPQLS(1)PEARPR ;;;; 175.42 1.50E-12 5994910000 1252538 1658449 1500883 1510014 1753299 1583965 1750000 1799946 1569947 1821627 TRUE FALSE FALSE 1531160.757 1852390.184 2056122.079 1592502.241 1578734.395 1666898.958 1376098.204 1358506.421 1885020.962 1367528.913 1.119655125 1.354552848 1.503530974 1.164510838 1.154443156 1.218913137 1.006266259 0.993402339 1.378413973 1 20.38313991 -5.48849249 18.67836918 1.126901928 1.329652723 0.292936459 0.13996955 37.26857657 20242.73121 0.039416151 0.058328966 3.25E-06 5.48849249 0.202750795 S(ph)PSFGDPQLS(ph)PEARPR ddPTM_HeLa_A486_30min_R1 5 SPSFGDPQLSPEARPR 16 1 O95425-3 O95425-3 SVIL Supervillin 2 0 S(0.997)PS(0.003)FGDPQLS(1)PEARPR;S(0.996)PS(0.004)FGDPQLS(1)PEARPR;S(0.999)PS(0.001)FGDPQLS(1)PEARPR;S(0.997)PS(0.003)FGDPQLS(1)PEARPR;S(0.999)PS(0.002)FGDPQLS(0.999)PEARPR ;;;; 154.87 2.94E-08 5857430000 1132033 1307520 919751 476197 1279360 1105085 1205108 1173869 1013005 1336230 TRUE FALSE FALSE 1052683.333 1203907.353 1275903.219 1108610.682 1118890.739 968750.8484 903577.2321 906604.6541 1100813.089 1001629.311 1.050970974 1.201949005 1.273827758 1.106807349 1.117070684 0.96717502 0.902107419 0.905129916 1.09902244 1 19.93391725 -6.108786778 2.308299576 0.962562569 1.170180627 0.574711117 0.07549016 0.213438595 2.23763255 0.028422704 0.028961957 7.78E-07 6.108786778 0.207618058 S(ph)PSGDRPAVGHSGLKPLSGETPLSAYK ddPTM_HeLa_A485_30min_R1 1 SPSGDRPAVGHSGLKPLSGETPLSAYK 27 2 A0A0J9YYE2;Q8IXZ2 A0A0J9YYE2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 0 S(0.542)PS(0.455)GDRPAVGHS(0.003)GLKPLSGETPLSAYK 165.8 4.11E-14 222260000 108790 109290 92476 122600 153370 121160 148340 168320 119180 177570 TRUE FALSE FALSE 132989.9602 122070.5148 126686.7206 129297.3276 138099.9443 127503.7503 116645.9472 127039.2561 143098.3328 133305.0669 0.997636198 0.915722992 0.950351878 0.969935581 1.035969206 0.956480899 0.875030108 0.952996454 1.073465069 1 17.02437209 -7.745814273 24.96537314 1.036732523 0.955528673 0.346796784 0.043873082 232.6787313 371771.4303 0.031271416 0.011728509 1.80E-08 7.745814273 -0.081203849 S(ph)PSGDRPAVGHSGLKPLSGETPLSAYK ddPTM_HeLa_A486_30min_R1 1 SPSGDRPAVGHSGLKPLSGETPLSAYK 27 2 A0A0J9YYE2;Q8IXZ2 A0A0J9YYE2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 0 S(0.971)PS(0.029)GDRPAVGHSGLKPLSGETPLSAYK 127.95 3.35E-06 254610000 130820 130940 72437 40962 109910 123450 141080 123920 107000 144190 TRUE FALSE FALSE 121650.1936 120563.8375 100486.5463 95361.6061 96124.06293 108219.9941 105780.2918 95706.12115 116274.8462 108083.8855 1.125516473 1.115465428 0.929708863 0.882292542 0.889346849 1.001259287 0.978686983 0.885480021 1.075783366 1 16.72179192 -4.756493199 24.76060471 0.948740687 1.120491057 0.554583474 0.058974541 73.16208461 366236.093 0.015087201 0.03734807 1.75E-05 4.756493199 0.171750369 S(ph)PSGGAAGPLLTPSQSLDGSR ddPTM_HeLa_A485_30min_R1 7 SPSGGAAGPLLTPSQSLDGSR 21 0 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.682)PS(0.318)GGAAGPLLTPSQSLDGSR;S(0.588)PS(0.412)GGAAGPLLTPSQSLDGSR;S(0.5)PS(0.5)GGAAGPLLTPSQSLDGSR;S(0.975)PS(0.025)GGAAGPLLTPSQSLDGSR;S(0.913)PS(0.087)GGAAGPLLTPSQSLDGSR;S(0.808)PS(0.192)GGAAGPLLTPSQSLDGSR;S(0.768)PS(0.232)GGAAGPLLTPSQSLDGSR ;;;;;; 348.33 8.40E-128 13499510000 926694 1130770 1273478 920009 1230139 987438 1469156 1197834 991153 1475862 TRUE FALSE FALSE 1132833.883 1263003.715 1744590.506 970266.7621 1107662.042 1039138.727 1155258.819 904063.3334 1190068.316 1107956.765 1.022453149 1.139939531 1.574601611 0.875726195 0.999733994 0.937887434 1.04269305 0.815973477 1.07411079 1 20.07947015 -5.31847982 24.99979789 0.959777549 1.235095723 0.429729193 0.148634123 253.4195944 111068.6752 0.041260606 0.061199398 4.80E-06 5.31847982 0.275318175 S(ph)PSGGAAGPLLTPSQSLDGSR ddPTM_HeLa_A486_30min_R1 4 SPSGGAAGPLLTPSQSLDGSR 21 0 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.867)PS(0.133)GGAAGPLLTPSQSLDGSR;S(0.783)PS(0.217)GGAAGPLLTPSQSLDGSR;S(0.68)PS(0.32)GGAAGPLLTPSQSLDGSR;S(0.999)PS(0.001)GGAAGPLLTPSQSLDGSR ;;; 388.54 9.20E-158 7317170000 616346 753064 578220 219791 691503 690502 711427 642758 713638 630453 TRUE FALSE FALSE 573143.3282 693388.466 802122.2693 511684.5556 604768.2457 605314.8837 533420.4399 496416.0347 775496.7164 472583.4652 1.212787519 1.467229637 1.697313445 1.082739015 1.27970674 1.280863442 1.128732762 1.050430392 1.640973021 1 18.85020963 -5.277532554 24.9623235 1.213752898 1.459922176 0.244325551 0.20139811 1100.59725 1707147.6 0.055392826 0.082447704 5.28E-06 5.277532554 0.246169277 S(ph)PSGGAAGPLLTPSQSLDGSRR ddPTM_HeLa_A485_30min_R1 6 SPSGGAAGPLLTPSQSLDGSRR 22 1 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.991)PS(0.009)GGAAGPLLTPSQSLDGSRR;S(0.995)PS(0.005)GGAAGPLLTPSQSLDGSRR;S(0.955)PS(0.045)GGAAGPLLTPSQSLDGSRR;S(0.934)PS(0.066)GGAAGPLLTPSQSLDGSRR;S(0.998)PS(0.002)GGAAGPLLTPSQSLDGSRR;S(0.997)PS(0.003)GGAAGPLLTPSQSLDGSRR ;;;;; 192.75 3.09E-20 19729460000 184124 135797 123770 453563 215088 228664 278349 294429 162910 425434 TRUE FALSE FALSE 225081.7486 151677.2779 169557.6735 478339.9982 193673.0835 240636.4935 218877.4622 222219.8261 195604.5427 319381.1333 0.704743409 0.474909949 0.530894457 1.497709001 0.60640114 0.753446176 0.685317445 0.695782571 0.612448646 1 18.28491957 -11.46548443 2.115501659 3.576365009 0.733218216 0.083048432 0.269756931 9954407.579 554043.6821 123619596.7 0.068901476 3.42E-12 11.46548443 -2.843146794 S(ph)PSGGAAGPLLTPSQSLDGSRR ddPTM_HeLa_A486_30min_R1 7 SPSGGAAGPLLTPSQSLDGSRR 22 1 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.876)PS(0.124)GGAAGPLLTPSQSLDGSRR;S(0.985)PS(0.015)GGAAGPLLTPSQSLDGSRR;S(0.942)PS(0.058)GGAAGPLLTPSQSLDGSRR;S(0.872)PS(0.128)GGAAGPLLTPSQSLDGSRR;S(0.902)PS(0.098)GGAAGPLLTPSQSLDGSRR;S(0.97)PS(0.03)GGAAGPLLTPSQSLDGSRR;S(0.968)PS(0.032)GGAAGPLLTPSQSLDGSRR ;;;;;; 160.67 6.32E-14 16325440000 239134 272257 169671 537424.6 254880 344837 426712 402214 184632 780810 TRUE FALSE FALSE 222371.9415 250682.3638 235372.1551 1251151.629 222910.5737 302294.517 319944.1443 310638.6525 200636.0504 585290.0938 0.379934572 0.428304471 0.402146145 2.137660695 0.380854855 0.516486645 0.546641995 0.530743055 0.342797619 1 19.15879234 S(ph)PSGHPHVR ddPTM_HeLa_A485_30min_R1 14 SPSGHPHVR 9 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.988)PS(0.012)GHPHVR;S(0.975)PS(0.025)GHPHVR;S(1)PSGHPHVR;S(0.985)PS(0.015)GHPHVR;S(0.925)PS(0.075)GHPHVR;S(0.998)PS(0.002)GHPHVR;S(0.949)PS(0.051)GHPHVR;S(0.998)PS(0.002)GHPHVR;S(0.999)PS(0.001)GHPHVR;S(0.998)PS(0.002)GHPHVR;S(0.999)PS(0.001)GHPHVR;S(0.999)PS(0.001)GHPHVR;S(0.99)PS(0.01)GHPHVR;S(0.962)PS(0.038)GHPHVR ;;;;;;;;;;;;; 163.84 8.18E-06 87986006000 1982287.3 3019269 1705524 1406286.3 1468556.2 2497998 2032335 3309970 2285878 2122155 TRUE FALSE FALSE 2423240.271 3372346.245 2336468.3 1483108.16 1322341.588 2628789.313 1598110.025 2498194.668 2744632.747 1593140.814 1.52104588 2.116791068 1.466579903 0.930933504 0.830021789 1.650067144 1.003119128 1.568094073 1.722781014 1 20.60344236 -4.978012858 9.657186058 1.252419831 1.813336601 0.329278599 0.326219013 0.34678127 141.3806757 0.086991152 0.17942356 1.05E-05 4.978012858 0.56091677 S(ph)PSGHPHVR ddPTM_HeLa_A486_30min_R1 11 SPSGHPHVR 9 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.999)PS(0.001)GHPHVR;S(0.998)PS(0.002)GHPHVR;S(0.987)PS(0.013)GHPHVR;S(0.979)PS(0.021)GHPHVR;S(0.998)PS(0.002)GHPHVR;S(0.999)PS(0.001)GHPHVR;S(0.991)PS(0.009)GHPHVR;S(0.989)PS(0.011)GHPHVR;S(0.986)PS(0.014)GHPHVR;S(0.988)PS(0.012)GHPHVR;S(0.991)PS(0.009)GHPHVR ;;;;;;;;;; 145.46 7.24E-05 39986714000 1801366.2 986667.8 2166671.8 233928.3 1114179.9 2284179.9 1416769.8 1129900.9 2037955.1 1245516.5 TRUE FALSE FALSE 1675099.732 908480.6501 3005665.146 544596.9045 974429.0676 2002381.008 1062279.011 872647.1306 2214606.689 933631.0614 1.79417738 0.973061724 3.219328566 0.583310611 1.04369821 2.144724068 1.137793134 0.934680911 2.372036215 1 19.83249303 S(ph)PSGLRPR ddPTM_HeLa_A485_30min_R1 5 SPSGLRPR 8 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 S(0.984)PS(0.016)GLRPR;S(0.996)PS(0.004)GLRPR;S(0.865)PS(0.135)GLRPR;S(0.908)PS(0.092)GLRPR;S(0.993)PS(0.007)GLRPR ;;;; 106.14 0.00068028 2053850000 145413 265526 235661 158448 222896 192964 198050 209244 162194 203840 TRUE FALSE FALSE 177759.6202 296576.9559 322841.8106 167103.613 200703.6916 203067.2967 155734.9996 157926.5809 194744.8481 153026.4394 1.161626846 1.938076564 2.109712621 1.091991774 1.311562188 1.327007917 1.017699949 1.032021535 1.272622227 1 17.22342141 -5.279657928 24.78184928 1.16029198 1.756632476 0.528393282 0.253388746 541.02067 735924.1475 0.07211543 0.107204222 5.25E-06 5.279657928 0.596340496 S(ph)PSGLRPR ddPTM_HeLa_A486_30min_R1 6 SPSGLRPR 8 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 S(0.944)PS(0.056)GLRPR;S(0.995)PS(0.005)GLRPR;S(0.994)PS(0.006)GLRPR;S(0.94)PS(0.06)GLRPR;S(0.984)PS(0.016)GLRPR;S(0.995)PS(0.005)GLRPR ;;;;; 104.39 0.00071976 2295950000 241770 263463 217190 81945.7 231906 193659 234511 219811 192956 246153 TRUE FALSE FALSE 224823.1715 242585.2324 301291.7845 190773.7309 202818.187 169767.3216 175833.8674 169764.8337 209681.5814 184514.6866 1.218456783 1.314720453 1.632887821 1.033921659 1.099198068 0.920074844 0.952953234 0.920061361 1.136395077 1 17.49337613 -5.383667299 7.511470268 1.000630518 1.380307415 0.687148738 0.117451892 0.150040177 8.555842512 0.033622334 0.049963318 4.13E-06 5.383667299 0.379676897 S(ph)PSGPVK ddPTM_HeLa_A486_30min_R1 2 SPSGPVK 7 0 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 S(0.998)PS(0.002)GPVK;S(0.999)PS(0.001)GPVK ; 82.279 0.010805 401580000 1124460 858680 632970 481020 753520 1669950 1110810 871880 1161420 1667380 TRUE FALSE FALSE 1045641.161 790635.0695 878072.9355 1119838.869 659006.4953 1463928.548 832873.589 673371.957 1262092.821 1249857.195 0.836608506 0.632580324 0.702538609 0.895973455 0.527265433 1.171276649 0.666375 0.538759116 1.009789619 1 20.25333184 S(ph)PSGSAFGSQENLR ddPTM_HeLa_A485_30min_R1 1 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.997)PS(0.003)GSAFGSQENLR 83.823 0.0017874 0 35247 32285 53814 54015 78393 44675 58022 55960 42588 93341 TRUE FALSE FALSE 43087.57355 36060.44991 73722.03799 56965.70268 70587.91767 47014.11392 45625.1257 42235.72226 51135.02096 70072.80651 0.614897215 0.514614038 1.052077713 0.812950209 1.007351085 0.670932367 0.651110295 0.602740555 0.729741301 1 16.09656706 -11.44747588 2.142066088 3.331486196 0.743559429 0.182684549 0.165044553 11574698.52 600556.1583 131768479.6 0.044353235 3.57E-12 11.44747588 -2.587926767 S(ph)PSGSAFGSQENLR ddPTM_HeLa_A486_30min_R1 2 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.491)PS(0.491)GS(0.017)AFGSQENLR;S(0.784)PS(0.216)GSAFGSQENLR ; 207.31 4.61E-22 1126900000 108584 144529 103775 45914 149728 113756 123611 142565 116955 166551 TRUE FALSE FALSE 100972.8223 133075.9957 143959.4592 106890.1124 130947.7181 99721.94131 92682.22038 110106.0617 127092.7536 124845.5455 0.808781938 1.06592506 1.153100486 0.856178824 1.048877776 0.79876251 0.742375068 0.881938248 1.017999906 1 16.92978482 -6.256507616 24.95498953 0.871721282 0.9929887 0.133560065 0.12113581 726.4110838 3675682.443 0.041344981 0.040104292 5.54E-07 6.256507616 0.121267418 S(ph)PSHSGNAGDLK ddPTM_HeLa_A485_30min_R1 4 SPSHSGNAGDLK 12 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(0.86)PS(0.121)HS(0.019)GNAGDLK;S(0.664)PS(0.291)HS(0.045)GNAGDLK;S(0.893)PS(0.105)HS(0.002)GNAGDLK;S(0.547)PS(0.227)HS(0.227)GNAGDLK ;;; 145.86 1.86E-07 1785130000 942280 1036850 751130 1088550 1250030 1134710 1490480 1498650 834060 1475080 TRUE FALSE FALSE 1151886.935 1158100.588 1029004.244 1148014.73 1125572.624 1194121.661 1172026.772 1131103.738 1001448.192 1107369.703 1.040200876 1.045812058 0.929232795 1.036704117 1.01643798 1.078340556 1.05838797 1.021432801 0.904348556 1 20.07870553 -7.653183081 8.196133175 0.952750058 1.02856537 0.335275613 0.042973521 0.269999406 18.27462757 0.029967115 0.011196549 2.22E-08 7.653183081 0.075815311 S(ph)PSHSGNAGDLK ddPTM_HeLa_A486_30min_R1 1 SPSHSGNAGDLK 12 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(0.973)PS(0.012)HS(0.015)GNAGDLK 139.94 4.12E-06 575760000 365800 361270 227910 135380 362170 366600 467060 437760 299010 464630 TRUE FALSE FALSE 340159.309 332641.6495 316162.8556 315171.4817 316743.2615 321372.6193 350196.6479 338091.6042 324928.4276 348283.6238 0.976673279 0.955088401 0.907774107 0.904927652 0.909440582 0.922732501 1.005492719 0.970736438 0.93294202 1 18.40990311 -6.740182025 24.99865726 0.974854168 0.927597275 0.412360525 0.027872994 259.349971 304995.5643 0.011427883 0.008843424 1.82E-07 6.740182025 -0.047256893 S(ph)PSISNMAALSR ddPTM_HeLa_A485_30min_R1 1 SPSISNMAALSR 12 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 S(0.996)PS(0.004)ISNMAALSR 67.579 0.01376 187240000 104880 134440 145840 121870 179430 131720 153250 142240 146150 155890 TRUE FALSE FALSE 128210.1942 150161.5885 199792.2849 128527.4495 161565.3192 138616.6555 120506.8856 107355.417 175480.9644 117029.4919 1.095537476 1.28310895 1.707196037 1.098248376 1.380552171 1.184459175 1.029713823 0.917336435 1.499459337 1 16.83651262 -6.46127199 4.64630798 1.104296791 1.32011228 0.163859449 0.215032904 0.386806717 16.8023905 0.078442528 0.067017313 3.46E-07 6.46127199 0.215815489 S(ph)PSISNMAALSR ddPTM_HeLa_A486_30min_R1 1 SPSISNMAALSR 12 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 S(0.98)PS(0.02)ISNMAALSR 64.615 0.020012 189680000 149770 176290 161160 52489 190320 143020 167920 171740 151660 156810 TRUE FALSE FALSE 139271.8964 162320.1384 223565.468 122197.0446 166448.2909 125375.6465 125904.6399 132638.5511 164806.0109 117543.7553 1.184851513 1.380933746 1.901976565 1.03958772 1.416053881 1.066629581 1.071129977 1.128418525 1.402082233 1 16.84283837 -5.325142308 24.99999187 1.168914027 1.478433433 0.330718945 0.213881441 249.6210262 97962.19425 0.060035088 0.089046442 4.73E-06 5.325142308 0.309519406 S(ph)PSKAVAAR ddPTM_HeLa_A485_30min_R1 1 SPSKAVAAR 9 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 0 S(0.997)PS(0.003)KAVAAR 85.522 0.0021812 277270000 293120 517220 152890 159330 230800 563470 484960 1366300 269080 261320 TRUE FALSE FALSE 358323.5327 577704.3798 209450.3733 168033.7945 207820.7416 592972.4179 381344.3342 1031212.783 323081.8879 196177.7332 1.826524993 2.944800973 1.0676562 0.856538567 1.059349286 3.022628553 1.943871651 5.256523081 1.646883581 1 17.58180178 -6.269633407 24.54763592 2.800632259 1.562978096 0.141043204 1.198543616 808.5292255 2422181.102 0.41449801 0.371841914 5.37E-07 6.269633407 -1.237654163 S(ph)PSKPLPEVTDEYK ddPTM_HeLa_A486_30min_R1 1 SPSKPLPEVTDEYK 14 1 P05455;E9PGX9;E9PFL9;E7ERC4 P05455 SSB Lupus La protein 1 0 S(0.985)PS(0.015)KPLPEVTDEYK 79.97 0.00082695 0 105090 112910 42857 36718 94863 143580 167000 143570 92952 171330 TRUE FALSE FALSE 97723.73369 103962.6004 59452.37815 85481.35962 82964.39798 125866.5594 125214.8337 110882.2451 101009.1542 128427.8528 0.760923207 0.809501974 0.462924333 0.665598293 0.646000039 0.980056558 0.974981913 0.8633816 0.786505045 1 16.9705986 -6.255108119 24.94100419 0.915821181 0.665159331 0.600549469 0.102692072 374.3047537 1474515.657 0.036215942 0.035362953 5.56E-07 6.255108119 -0.25066185 S(ph)PSKPLPEVTDEYKNDVK ddPTM_HeLa_A485_30min_R1 1 SPSKPLPEVTDEYKNDVK 18 2 P05455;E9PGX9;E9PFL9;E7ERC4 P05455 SSB Lupus La protein 1 0 S(0.865)PS(0.135)KPLPEVTDEYKNDVK 170.18 1.22E-12 1461500000 1303900 588300 344410 2448000 972770 1058000 2046800 1818000 786310 3324400 TRUE FALSE FALSE 1593948.057 657096.5675 471821.5911 2581728.041 875917.6032 1113395.244 1609484.459 1372132.649 944115.2045 2495688.261 0.638680753 0.263292727 0.189054698 1.034475372 0.350972362 0.446127532 0.64490605 0.5498013 0.378298532 1 21.25100631 -11.30386094 2.177639509 3.299366061 0.498984054 0.302011265 0.228257456 15622808.43 1921999.27 177039677 0.056445343 4.97E-12 11.30386094 -2.800382007 S(ph)PSKPLPEVTDEYKNDVK ddPTM_HeLa_A486_30min_R1 4 SPSKPLPEVTDEYKNDVK 18 2 P05455;E9PGX9;E9PFL9;E7ERC4 P05455 SSB Lupus La protein 1 0 S(0.751)PS(0.249)KPLPEVTDEYKNDVK;S(0.85)PS(0.15)KPLPEVTDEYKNDVK;S(0.966)PS(0.034)KPLPEVTDEYKNDVK;S(0.96)PS(0.04)KPLPEVTDEYKNDVK ;;; 178.11 4.72E-14 5511970000 2561950 2010560 526943 1720550 1501560 3108890 4344110 3758800 1518640 5296920 TRUE FALSE FALSE 2382370.535 1851235.903 730989.4416 4005527.352 1313220.343 2725346.761 3257167.731 2903003.294 1650276.938 3970536.755 0.60001221 0.466243236 0.184103432 1.008812561 0.330741264 0.686392528 0.820334361 0.731136235 0.415630692 1 21.92090262 -13.99999992 0.094140477 2.261544645 0.285917213 0.233210425 0.230312236 294.7423598 1.908280144 74.76744004 4.650902377 1.00E-14 13.99999992 -1.975627431 S(ph)PSKPTLAYPESNSR ddPTM_HeLa_A485_30min_R1 2 SPSKPTLAYPESNSR 15 1 F5GXS6;F5H6R3;F5H0C6;F5H1B0;F5GYW0;Q86XR8-3;Q86XR8-2;Q86XR8-4;Q86XR8-5;Q86XR8 F5GXS6 CEP57 Centrosomal protein of 57 kDa 1 0 S(0.818)PS(0.182)KPTLAYPESNSR;S(0.991)PS(0.009)KPTLAYPESNSR ; 117.67 5.60E-05 1187000000 388600 423330 260450 455320 450730 452010 634780 681480 368140 651560 TRUE FALSE FALSE 475042.7293 472834.761 356801.2932 480192.9787 405853.7386 475676.5447 499154.0673 514345.9615 442022.3212 489138.0831 0.971183283 0.966669285 0.729449016 0.981712517 0.829732447 0.972479063 1.020476803 1.051535301 0.903675949 1 18.89988227 -6.456101264 7.229858989 0.998048526 0.895414376 0.263503478 0.078997079 0.361536684 34.20481803 0.027652495 0.024220492 3.50E-07 6.456101264 -0.10263415 S(ph)PSKPTLAYPESNSR ddPTM_HeLa_A486_30min_R1 3 SPSKPTLAYPESNSR 15 1 F5GXS6;F5H6R3;F5H0C6;F5H1B0;F5GYW0;Q86XR8-3;Q86XR8-2;Q86XR8-4;Q86XR8-5;Q86XR8 F5GXS6 CEP57 Centrosomal protein of 57 kDa 1 0 S(0.987)PS(0.013)KPTLAYPESNSR;S(0.881)PS(0.117)KPT(0.002)LAYPESNSR;S(0.998)PS(0.002)KPTLAYPESNSR ;; 106.49 0.00014311 1430020000 652080 625580 360540 165224 635880 608620 731730 737210 457027 809330 TRUE FALSE FALSE 606372.5593 576006.7625 500150.7436 384649.822 556122.0011 533534.6524 548643.4145 569363.3762 496642.4683 606668.5001 0.999512187 0.949458827 0.824421811 0.634036252 0.916681847 0.879450066 0.904354544 0.938508223 0.818638957 1 19.21054888 S(ph)PSLAK ddPTM_HeLa_A486_30min_R1 1 SPSLAK 6 0 Q5SW96;A6PVK7;Q5VXU9-3;Q5VXU9;O15018-2;O15018 Q5SW96 LDLRAP1;C9orf84;PDZD2 Low density lipoprotein receptor adapter protein 1;Uncharacterized protein C9orf84;PDZ domain-containing protein 2;Processed PDZ domain-containing protein 2 1 0 S(0.928)PS(0.072)LAK 63.565 0.036649 459480000 967840 755830 486700 311740 724850 951570 1040200 922080 779450 1181200 TRUE FALSE FALSE 899999.4139 695935.2781 675163.2743 725746.4745 633932.554 834174.9683 779930.9579 712142.5129 847013.3536 885419.8317 1.016466293 0.785994681 0.762534619 0.819663676 0.715968325 0.942123655 0.880860051 0.804299257 0.956623427 1 19.75600216 -6.290150031 24.98775267 0.902304904 0.815004176 0.22103118 0.088406316 1252.359622 1089962.206 0.030997387 0.027341816 5.13E-07 6.290150031 -0.087300728 S(ph)PSLDNPTPFPNLGPSENPLKR ddPTM_HeLa_A485_30min_R1 1 SPSLDNPTPFPNLGPSENPLKR 22 1 M0R0R8;M0R0X9;M0QXC8;M0QX56;M0R3C2;M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653-3;Q14653-2;Q14653;Q14653-4 M0R0R8 IRF3 Interferon regulatory factor 3 1 0 S(0.919)PS(0.081)LDNPTPFPNLGPSENPLKR 140.8 6.17E-08 158990000 97179 78966 88825 101870 83436 77979 86943 86210 83156 123120 TRUE FALSE FALSE 118796.1333 88200.38679 121685.0638 107434.9002 75128.81888 82061.85986 68366.91779 65066.86233 99844.64645 92428.44986 1.285276703 0.954255826 1.316532561 1.162357481 0.812832185 0.887842001 0.739673963 0.70397007 1.080237163 1 16.49604937 -5.756122931 24.63962021 0.850257595 1.173289817 0.539764238 0.138892181 80.40313674 372633.4801 0.040269377 0.050430552 1.75E-06 5.756122931 0.323032221 S(ph)PSLDNPTPFPNLGPSENPLKR ddPTM_HeLa_A486_30min_R1 2 SPSLDNPTPFPNLGPSENPLKR 22 1 M0R0R8;M0R0X9;M0QXC8;M0QX56;M0R3C2;M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653-3;Q14653-2;Q14653;Q14653-4 M0R0R8 IRF3 Interferon regulatory factor 3 1 0 S(0.881)PS(0.119)LDNPTPFPNLGPSENPLKR;S(0.551)PS(0.449)LDNPTPFPNLGPSENPLKR ; 179.99 1.25E-19 467910000 362890 422600 199713 122179 344802 389980 422360 402280 353490 483810 TRUE FALSE FALSE 337453.285 389111.6369 277047.2221 284438.8866 301553.718 341868.2326 316681.0607 310689.6257 384130.7978 362660.8269 0.930492791 1.072935393 0.763929274 0.78431103 0.83150342 0.942666556 0.873215515 0.856694748 1.059201241 1 18.46826139 -7.760244526 24.99994782 1.029600664 0.881193571 0.329360553 0.084259583 37.95384512 794256.4525 0.069488843 0.022893772 1.74E-08 7.760244526 -0.148407093 S(ph)PSLESLSRPPSLGFGDTR ddPTM_HeLa_A485_30min_R1 2 SPSLESLSRPPSLGFGDTR 19 1 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(0.961)PS(0.038)LESLSRPPSLGFGDTR;S(0.914)PS(0.085)LESLSRPPSLGFGDTR ; 84.327 0.0006085 205592000 165121 183361 167449 133031 222160 190946 219520 264280 151824 187118 TRUE FALSE FALSE 201851.5968 204803.4739 229395.3532 140298.1467 200040.9703 200943.6373 172617.7587 199464.9156 182293.6842 140472.9263 1.436943062 1.457956913 1.633021817 0.998755778 1.424053557 1.430479471 1.228832938 1.419952734 1.297714008 1 17.09993258 -13.21641256 0.153622786 1.85E-12 1.484474073 0.36359305 0.154790211 118.0405367 1.327649744 37.36682499 0.768490774 6.08E-14 13.21641256 1.484474073 S(ph)PSLESLSRPPSLGFGDTR ddPTM_HeLa_A486_30min_R1 1 SPSLESLSRPPSLGFGDTR 19 1 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(0.973)PS(0.026)LESLSRPPSLGFGDTR 60.747 0.0094486 163620000 40973 61668 70038 28656 88752 66228 83341 80357 51839 64948 TRUE FALSE FALSE 38101.00428 56781.20309 97158.58928 66712.61619 77619.89658 58057.46272 62488.20031 62061.46528 56332.44626 48684.59806 0.782608993 1.16630732 1.995674056 1.37030229 1.594341941 1.192522174 1.283531195 1.274765896 1.157089686 1 15.57117781 -7.773197323 0.857010926 1.007057373 1.382464557 0.121202048 0.293562899 1.237821894 1.97839372 0.293091435 0.109209785 1.69E-08 7.773197323 0.375407184 S(ph)PSLGSDLTFATR ddPTM_HeLa_A485_30min_R1 4 SPSLGSDLTFATR 13 0 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 0 S(0.972)PS(0.028)LGSDLTFATR;S(0.963)PS(0.037)LGSDLTFATR;S(0.916)PS(0.084)LGSDLTFATR;S(0.993)PS(0.007)LGSDLTFATR ;;; 207.97 9.50E-22 1052750000 578857 477937 466254 1157405 662707 476494 806596 634505 496082 1565206 TRUE FALSE FALSE 707621.7426 533827.5747 638740.757 1220631.104 596725.5642 501442.489 634260.1753 478891.6539 595641.1071 1175028.95 0.602216433 0.454310147 0.543595762 1.038809388 0.507839032 0.426749051 0.539782595 0.407557324 0.506916112 1 20.16426487 -10.13760712 3.579304494 1.000348357 0.558881495 0.377250348 0.170119373 67181591.16 114094086 281812.7901 0.046286022 7.28E-11 10.13760712 -0.441466862 S(ph)PSLGSDLTFATR ddPTM_HeLa_A486_30min_R1 4 SPSLGSDLTFATR 13 0 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 0 S(0.921)PS(0.079)LGSDLTFATR;S(0.93)PS(0.07)LGSDLTFATR;S(0.995)PS(0.005)LGSDLTFATR;S(0.945)PS(0.055)LGSDLTFATR ;;; 179.41 4.89E-17 1059969000 606355 591086 300296 266090 496459 783601 1017744 816324 566167 1110753 TRUE FALSE FALSE 563852.6457 544246.1927 416578.6534 619470.9674 434188.4829 686928.2757 763093.6866 630464.8454 615242.8114 832613.219 0.677208376 0.653660283 0.500326735 0.744008086 0.521476807 0.825026867 0.916504409 0.75721215 0.738929911 1 19.66728694 -6.314029295 9.734422241 0.836948194 0.621618843 0.582604199 0.096360473 0.433954087 78.49069602 0.032902641 0.029036629 4.85E-07 6.314029295 -0.215329351 S(ph)PSLLQS(ph)GAK ddPTM_HeLa_A486_30min_R1 2 SPSLLQSGAK 10 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 2 0 S(0.999)PS(0.111)LLQS(0.89)GAK;S(0.997)PS(0.009)LLQS(0.993)GAK ; 92.457 0.00085966 57978000 491740 500460 262460 243740 433280 561300 649470 547260 384300 649070 TRUE FALSE FALSE 457271.5653 460801.727 364091.5409 567439.0379 378933.9822 492052.5129 486965.7366 422660.8446 417611.4334 486538.6473 0.939846337 0.947102002 0.748330154 1.166277419 0.778836346 1.011332842 1.000877812 0.868709705 0.858331472 1 18.89219488 -2.407863592 19.67813873 0.930011071 0.944983855 0 0.117261234 0 0 0.025076453 0 0.003909637 2.407863592 0.014972784 S(ph)PSLLQSGAK ddPTM_HeLa_A485_30min_R1 5 SPSLLQSGAK 10 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 S(0.995)PS(0.005)LLQSGAK;S(0.994)PS(0.006)LLQSGAK;S(0.99)PS(0.01)LLQSGAK;S(0.998)PS(0.002)LLQSGAK;S(0.984)PS(0.016)LLQSGAK ;;;; 125.89 0.00020329 1189060000 1531266 1496334 1395858 1774530 1715100 1458486 1578480 1588980 1389663 2271320 TRUE FALSE FALSE 1871890.839 1671317.245 1912243.961 1871468.081 1544338.622 1534850.072 1241224.853 1199280.164 1668555.617 1705121.725 1.097804815 0.980174741 1.121470645 1.09755688 0.905705792 0.900141057 0.727939147 0.703339912 0.978555134 1 20.7014433 -5.947478109 2.579207402 0.835561651 1.071449606 0.508438906 0.097106567 0.216859308 2.927360147 0.033443149 0.037664193 1.13E-06 5.947478109 0.235887956 S(ph)PSLLQSGAK ddPTM_HeLa_A486_30min_R1 4 SPSLLQSGAK 10 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 S(0.999)PS(0.001)LLQSGAK;S(0.997)PS(0.003)LLQSGAK;S(0.998)PS(0.002)LLQSGAK;S(0.998)PS(0.002)LLQSGAK ;;; 114.24 0.00054593 1480550000 1606640 1596550 849370 564680 1250680 1428240 1661040 1543520 1252280 1901080 TRUE FALSE FALSE 1494022.833 1470033.563 1178268.811 1314603.577 1093808.052 1252038.27 1245430.223 1192094.191 1360828.639 1425037.194 1.048409711 1.031575575 0.826833725 0.922504748 0.767564564 0.878600415 0.87396331 0.836535492 0.954942541 1 20.44256814 -4.749051056 24.19377258 0.873642967 1.039992862 0.493868817 0.063206225 109.432093 213709.4196 0.015056791 0.039173811 1.78E-05 4.749051056 0.166349894 S(ph)PSLSLAPLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SPSLSLAPLSPR 12 0 G3V160;Q969H4-2;Q969H4 G3V160 CNKSR1 Connector enhancer of kinase suppressor of ras 1 2 0 S(0.995)PS(0.005)LSLAPLS(1)PR;S(0.997)PS(0.004)LSLAPLS(1)PR ; 165.57 4.78E-10 102348000 63820 85055 78013 67096 86658 70584 87664 82905 63654 82435 TRUE FALSE FALSE 78016.53882 95001.44237 106873.2551 70761.28458 78030.02525 74279.6691 68933.87025 62572.41876 76428.77393 61885.4716 1.260660003 1.535117046 1.726952261 1.14342321 1.260877929 1.200276368 1.113894238 1.011100298 1.235003498 1 15.91731314 -5.28549559 24.39285709 1.144994761 1.510330479 0.621849401 0.13205385 361.7315811 366792.9058 0.037757495 0.056040526 5.18E-06 5.28549559 0.365335718 S(ph)PSLSLAPLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SPSLSLAPLSPR 12 0 G3V160;Q969H4-2;Q969H4 G3V160 CNKSR1 Connector enhancer of kinase suppressor of ras 1 2 0 S(0.998)PS(0.002)LSLAPLS(1)PR;S(0.999)PS(0.001)LSLAPLS(1)PR ; 171.08 2.74E-10 147169000 160571 159544 122941 54940 150655 136419 146138 139692 136060 164034 TRUE FALSE FALSE 149315.8021 146901.1524 170547.0477 127903.0965 131758.4451 119589.0108 109572.7267 107887.1811 147853.7904 122958.8187 1.214356186 1.194718312 1.387025749 1.040210843 1.071565639 0.972594012 0.891133534 0.877425322 1.20246593 1 16.90781568 -5.406832291 5.47991613 0.994735278 1.257185173 0.589626213 0.098517104 0.160155787 6.600670696 0.028635436 0.042748653 3.92E-06 5.406832291 0.262449895 S(ph)PSLSSK ddPTM_HeLa_A485_30min_R1 5 SPSLSSK 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3;Q9UPU5 A9Z1X7;M0R088;Q8IYB3;Q9UPU5 SRRM1;USP24 Serine/arginine repetitive matrix protein 1;Ubiquitin carboxyl-terminal hydrolase 24 1 0 S(0.98)PS(0.02)LSSK;S(0.997)PS(0.003)LSSK;S(0.92)PS(0.08)LSSK;S(0.987)PS(0.013)LSSK;S(0.976)PS(0.024)LSSK ;;;; 105.1 0.0034864 19297100000 17386300 13997500 13797300 27732300 22454700 15097500 22379900 18277100 17764600 34986300 TRUE FALSE FALSE 21253822.45 15634385.86 18901495.42 29247245.33 20219031.22 15887981.75 17598251.54 13794612.57 21329792.27 26264859.29 0.809211358 0.595258695 0.719649598 1.113550429 0.769813042 0.604914025 0.6700303 0.525211745 0.812103809 1 24.64663052 -6.013498848 24.90496198 0.689263807 0.806955093 0.037334611 0.17102279 1598.533287 2949247.707 0.056187251 0.058657728 9.69E-07 6.013498848 0.117691286 S(ph)PSLSSK ddPTM_HeLa_A486_30min_R1 4 SPSLSSK 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3;Q9UPU5 A9Z1X7;M0R088;Q8IYB3;Q9UPU5 SRRM1;USP24 Serine/arginine repetitive matrix protein 1;Ubiquitin carboxyl-terminal hydrolase 24 1 0 S(0.987)PS(0.013)LSSK;S(0.989)PS(0.011)LSSK;S(0.995)PS(0.005)LSSK;S(0.974)PS(0.026)LSSK ;;; 124.74 0.0017662 15040600000 11013670 14213130 10271100 6160000 14401710 17225100 18221130 16188830 14140040 16024190 TRUE FALSE FALSE 10241668.61 13086829.82 14248344.99 14340791.31 12595313.24 15100042.29 13662010.55 12502986.81 15365710.05 12011628.52 0.852646133 1.089513365 1.186212591 1.193908992 1.048593304 1.257118655 1.13739869 1.040906883 1.279236202 1 23.51792843 -4.283713329 3.152974957 1.146569983 0.816199381 0.496069499 0.087277503 0.248892298 3.940695913 0.020815438 0.197560282 5.20E-05 4.283713329 -0.330370602 S(ph)PSMISNDSETLEECMVCSDMKR ddPTM_HeLa_A485_30min_R1 1 SPSMISNDSETLEECMVCSDMKR 23 1 Q86YT6 Q86YT6 MIB1 E3 ubiquitin-protein ligase MIB1 1 0 S(0.5)PS(0.5)MISNDSETLEECMVCSDMKR 58.093 0.014817 200780000 29263 35429 24962 42488 48072 40227 50540 45805 37678 65780 TRUE FALSE FALSE 35772.45339 39572.11336 34196.48256 44809.01185 43285.78289 42333.22352 39741.71613 34571.25193 45239.629 49382.25659 0.724398921 0.801342751 0.692485215 0.907390932 0.876545259 0.857255752 0.804777239 0.700074365 0.916111011 1 15.59170514 -14 0.171689148 1.737779219 0.764879847 0.403374277 0.074719099 150.5499103 1.424571941 37.95857561 0.277003391 1.00E-14 14 -0.972899372 S(ph)PSMISNDSETLEECMVCSDMKR ddPTM_HeLa_A486_30min_R1 1 SPSMISNDSETLEECMVCSDMKR 23 1 Q86YT6 Q86YT6 MIB1 E3 ubiquitin-protein ligase MIB1 1 0 S(0.758)PS(0.242)MISNDSETLEECMVCSDMKR 116.94 5.60E-05 430280000 41535 43167 35564 21600 41638 40438 47040 50199 34920 56668 TRUE FALSE FALSE 38623.61099 39746.28971 49335.33324 50285.8916 36415.37378 35449.1707 35270.09446 38769.78354 37946.89372 42477.96395 0.909262295 0.935691968 1.161433568 1.18381125 0.857276818 0.834530834 0.83031509 0.912703433 0.893331275 1 15.374427 -5.790233521 24.99987758 0.878101014 1.047694549 0.418396621 0.091693288 210.8714874 183083.4051 0.030749305 0.034872553 1.62E-06 5.790233521 0.169593535 S(ph)PSMPENLNRPR ddPTM_HeLa_A486_30min_R1 1 SPSMPENLNRPR 12 1 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;H0Y999 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 S(0.976)PS(0.024)MPENLNRPR 66.784 0.0039546 0 74008 72426 61911 40142 84528 84123 97059 99725 63540 109190 TRUE FALSE FALSE 68820.42138 66686.69999 85884.59723 93452.60466 73925.71005 73744.75956 72773.81161 77019.79448 69047.69836 81848.11329 0.840830883 0.814761603 1.049316762 1.141780805 0.903206037 0.900995229 0.889132427 0.941008795 0.843607697 1 16.32066154 -9.052656236 14.37295774 1.000003255 0.929827129 0.0505845 0.095455424 0 0 0.100422661 0.024356073 8.86E-10 9.052656236 -0.070176126 S(ph)PSPAHLPDDPK ddPTM_HeLa_A485_30min_R1 1 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.696)PS(0.304)PAHLPDDPK 159.18 7.48E-09 4621600000 1518000 1586700 1579700 1824000 2020300 1407300 1828700 1478900 1337800 2510200 TRUE FALSE FALSE 1855673.863 1772250.763 2164096.767 1923640.501 1819151.838 1480984.052 1437983.306 1116197.456 1606284.189 1884453.337 0.984727946 0.940458821 1.148394988 1.020794977 0.965347246 0.785895847 0.763077163 0.592318968 0.852387352 1 20.84571464 -6.19143861 2.815496018 0.767277639 1.024961516 0.490084764 0.107775643 0.20900046 3.256074979 0.03840144 0.03733256 6.44E-07 6.19143861 0.257683876 S(ph)PSPAHLPDDPK ddPTM_HeLa_A486_30min_R1 1 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.577)PS(0.423)PAHLPDDPK 148.7 1.09E-07 4796500000 1485800 1492900 827080 589250 1373400 1604800 2000300 1901000 1218700 2114900 TRUE FALSE FALSE 1381653.093 1374597.167 1147347.526 1371803.779 1201135.366 1406816.092 1499803.783 1468183.799 1324337.897 1585315.274 0.871532064 0.867081261 0.723734606 0.865319222 0.757663403 0.887404616 0.946060262 0.926114712 0.835378249 1 20.59633835 -6.475325154 6.875195482 0.920326382 0.817513284 0.440770078 0.058570148 0.232685595 27.68049784 0.020498608 0.017790182 3.35E-07 6.475325154 -0.102813097 S(ph)PSPALHPPQK ddPTM_HeLa_A485_30min_R1 1 SPSPALHPPQK 11 0 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 S(0.973)PS(0.027)PALHPPQK 92.781 0.00068042 0 133770 124440 111670 131860 156220 127050 140110 135190 127970 188020 TRUE FALSE FALSE 163526.675 138992.1755 152981.38 139063.1779 140666.1883 133702.1415 110174.3539 102034.4405 153652.4052 141150.0743 1.158530563 0.984712026 1.083820755 0.985215053 0.996571833 0.947233944 0.780547616 0.722879113 1.088574739 1 17.10687036 -6.016683664 1.421600943 0.878972091 1.060979814 0.2921683 0.107037512 0.475707442 1.972748302 0.044500498 0.049213392 9.62E-07 6.016683664 0.182007723 S(ph)PSPAPPPRR ddPTM_HeLa_A486_30min_R1 1 SPSPAPPPRR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 S(0.956)PS(0.044)PAPPPRR 47.712 0.032229 70340000 25286 31948 43166 8403 45978 26700 29279 25875 29681 30883 TRUE FALSE FALSE 23513.58198 29416.32413 59881.03123 19562.60866 40211.01051 23406.02547 21953.08452 19983.82735 32253.77298 23149.69579 1.015718833 1.270700246 2.586687608 0.845048196 1.736999522 1.011072702 0.948309849 0.863243627 1.393269842 1 14.49870561 -6.279351542 23.7357286 1.028702504 1.503772172 0.190602953 0.460588796 718.3993466 951959.8021 0.161097318 0.142427378 5.26E-07 6.279351542 0.475069667 S(ph)PSPASGR ddPTM_HeLa_A485_30min_R1 1 SPSPASGR 8 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.849)PS(0.149)PAS(0.002)GR 78.113 0.0068271 0 106660 145410 104920 130730 98029 150220 120380 155750 148780 177470 TRUE FALSE FALSE 130386.149 162414.4346 143734.2741 137871.4489 88268.88856 158085.2869 94659.82959 117552.0683 178638.7813 133229.9951 0.978654611 1.21905307 1.078843199 1.034837904 0.662530149 1.186559279 0.710499385 0.882324346 1.340830052 1 17.0235594 -5.529003603 24.99818835 0.946590049 1.096865614 0.076280517 0.196379827 357.6050598 1459531.88 0.056633752 0.073318118 2.96E-06 5.529003603 0.150275565 S(ph)PSPAVPLR ddPTM_HeLa_A485_30min_R1 4 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 S(0.932)PS(0.068)PAVPLR;S(0.956)PS(0.044)PAVPLR;S(0.717)PS(0.283)PAVPLR;S(0.825)PS(0.175)PAVPLR ;;; 123.86 0.00031256 3023490000 1323670 1778610 1699480 1414690 2087630 1669260 2059660 2144300 1726370 1957780 TRUE FALSE FALSE 1618115.825 1986602.968 2328188.373 1491970.933 1879778.227 1756659.872 1619596.815 1618407.063 2072836.624 1469741.476 1.100952685 1.351668303 1.584080201 1.015124739 1.278985629 1.195216915 1.101960339 1.101150841 1.410340973 1 20.48713098 -5.279820592 24.88579124 1.166068848 1.346177245 0.228664575 0.157708283 1153.081638 1561120.792 0.043804463 0.065110407 5.25E-06 5.279820592 0.180108397 S(ph)PSPAVPLR ddPTM_HeLa_A486_30min_R1 3 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 S(0.951)PS(0.049)PAVPLR;S(0.963)PS(0.037)PAVPLR;S(0.713)PS(0.287)PAVPLR ;; 127.4 0.00027433 2646660000 2452850 2674280 2114550 710230 2876850 2295620 2636070 2532710 2189520 2411480 TRUE FALSE FALSE 2280917.882 2462360.313 2933360.39 1653451.333 2516008.647 2012409.745 1976497.404 1956067.222 2379309.357 1807629.712 1.261828054 1.362203939 1.622766195 0.914706879 1.391882768 1.113286494 1.093419405 1.082117211 1.316259265 1 20.78566775 -5.25947716 24.98700949 1.142321751 1.410259837 0.413519809 0.155228357 175.8186598 2238867.856 0.041403994 0.067348764 5.50E-06 5.25947716 0.267938086 S(ph)PSPFTHTHLAQGYR ddPTM_HeLa_A485_30min_R1 4 SPSPFTHTHLAQGYR 15 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 S(0.609)PS(0.391)PFTHTHLAQGYR;S(0.974)PS(0.026)PFTHTHLAQGYR;S(0.966)PS(0.034)PFTHTHLAQGYR;S(0.904)PS(0.096)PFTHTHLAQGYR ;;; 228.23 4.56E-34 1777570000 421826 493831 520370 474516 638020 467354 587510 590348 464534 644720 TRUE FALSE FALSE 515659.7384 551580.2397 712876.5174 500437.6075 574496.4886 491823.9328 461983.689 445564.2274 557761.7128 484003.1692 1.065405706 1.139621132 1.472875722 1.033955229 1.186968444 1.016158497 0.954505504 0.920581219 1.152392687 1 18.88465697 -6.152954984 1.826070579 0.996471892 1.199323415 0.310331419 0.124992643 0.419387923 2.768803975 0.050297421 0.049670152 7.03E-07 6.152954984 0.202851523 S(ph)PSPFTHTHLAQGYR ddPTM_HeLa_A486_30min_R1 4 SPSPFTHTHLAQGYR 15 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 S(0.6)PS(0.4)PFTHTHLAQGYR;S(0.952)PS(0.048)PFTHTHLAQGYR;S(0.982)PS(0.018)PFTHTHLAQGYR;S(0.877)PS(0.123)PFTHTHLAQGYR ;;; 235.95 3.53E-41 1934010000 568150 624850 532170 205630 672730 525090 669630 603650 495700 603660 TRUE FALSE FALSE 528325.6189 575334.6103 738240.476 478717.032 588349.9304 460309.7345 502081.4914 466212.0726 538667.6751 452499.6068 1.167571443 1.271458807 1.631472083 1.057939111 1.30022197 1.017259966 1.109573321 1.030303818 1.190426836 1 18.78755701 -5.836847194 1.549449959 1.078479917 1.329760898 0.336539834 0.147518627 0.438803022 2.185820691 0.054991016 0.07009746 1.46E-06 5.836847194 0.251280981 S(ph)PSPGLFR ddPTM_HeLa_A485_30min_R1 1 SPSPGLFR 8 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 S(0.516)PS(0.484)PGLFR 117.81 0.00087405 266660000 247240 363050 349220 244880 418300 363330 425750 438030 326230 366520 TRUE FALSE FALSE 302237.685 405505.5394 478411.0103 258257.1743 376652.5833 382353.397 334785.0344 330602.4557 391701.3686 275153.3093 1.098433763 1.473744003 1.738707092 0.938593742 1.368882621 1.389601302 1.216721817 1.201520914 1.423574987 1 18.06987615 -13.03064068 0.223798749 4.25E-12 1.361882882 0.162364372 0.20996673 177.8577468 2.638678141 81.1248274 0.397525359 9.32E-14 13.03064068 1.361882882 S(ph)PSPGLFR ddPTM_HeLa_A486_30min_R1 2 SPSPGLFR 8 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 S(0.704)PS(0.296)PGLFR;S(0.507)PS(0.493)PGLFR ; 116.05 0.00095373 1191029000 1266360 1421580 1171000 499910 1637170 1297030 1459320 1518340 1267180 1436120 TRUE FALSE FALSE 1177594.703 1308928.823 1624442.56 1163815.744 1431820.873 1137015.626 1094182.701 1172647.127 1377020.183 1076506.204 1.093904242 1.215904579 1.508995075 1.081104539 1.330062815 1.056209078 1.016420246 1.089308285 1.279156755 1 20.0379252 -6.272112651 24.65808912 1.089313219 1.24977322 0.258855498 0.133401813 873.6486891 2018354.156 0.046781819 0.041703396 5.34E-07 6.272112651 0.160460001 S(ph)PSPGPNHTSNS(ph)SNASNATVVPQNSSAR ddPTM_HeLa_A486_30min_R1 1 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 2 0 S(0.971)PS(0.09)PGPNHT(0.24)S(0.284)NS(0.402)S(0.013)NASNATVVPQNSSAR 174.92 1.87E-14 554870000 87166 116940 109820 478.01 101630 48324 47639 51319 103120 21688 TRUE FALSE FALSE 81056.11353 107673.2485 152345.2451 1112.831437 88882.61774 42362.2762 35719.21833 39634.78399 112058.5246 16257.18363 4.985864424 6.623118182 9.370949391 0.068451674 5.467282632 2.605757378 2.197134456 2.43798587 6.892862081 1 13.98878973 -5.256135671 24.99800057 3.071524282 6.956291284 0.432455696 2.117993825 426.952139 2012350.243 0.561870032 0.93768922 5.54E-06 5.256135671 3.884767003 S(ph)PSPGPNHTSNSSNASNATVVPQNSSAR ddPTM_HeLa_A485_30min_R1 2 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 S(0.949)PS(0.051)PGPNHTSNSSNASNATVVPQNSSAR;S(0.511)PS(0.488)PGPNHTSNSSNASNATVVPQNSSAR ; 271.33 4.77E-77 629100000 42430 112467 137265 9832.4 121044 75361 64040 68160 100070 27415.9 TRUE FALSE FALSE 51868.40712 125619.0373 188045.0356 10369.51912 108992.4343 79306.78543 50357.33084 51443.65313 120153.1311 20581.62068 2.520132302 6.103457024 9.136551415 0.503824226 5.295619623 3.853281851 2.446713581 2.499494764 5.837884827 1 14.32906897 -5.267608494 24.99996286 3.225232059 5.938387915 0.265451555 2.166503827 689.0740676 2792431.395 0.597567904 0.911991726 5.40E-06 5.267608494 2.713155856 S(ph)PSPHSCHR ddPTM_HeLa_A485_30min_R1 2 SPSPHSCHR 9 0 D3TTY5;A0A087WU80;P21580 D3TTY5 TNFAIP3 Tumor necrosis factor alpha-induced protein 3;A20p50;A20p37 1 0 S(0.5)PS(0.5)PHSCHR;S(0.5)PS(0.5)PHSCHR ; 99.283 0.0014963 44698000 58586 80702 39793 36495 30136.8 88328 37928 78002 73922 47321 TRUE FALSE FALSE 71618.25358 90139.39689 54514.08662 38488.62944 27136.27438 92952.7175 29824.37296 58871.8872 88757.46735 35524.74558 2.016010317 2.537369246 1.534538411 1.08343153 0.763869633 2.616562511 0.839537975 1.657207849 2.498468769 1 15.1165367 -4.77645075 23.26777256 1.497908866 2.27668944 0.202578875 0.617017198 141.5876642 219464.4812 0.15987262 0.335457772 1.67E-05 4.77645075 0.778780573 S(ph)PSPHSCHR ddPTM_HeLa_A486_30min_R1 2 SPSPHSCHR 9 0 D3TTY5;A0A087WU80;P21580 D3TTY5 TNFAIP3 Tumor necrosis factor alpha-induced protein 3;A20p50;A20p37 1 0 S(0.5)PS(0.5)PHSCHR;S(0.5)PS(0.5)PHSCHR ; 109.16 0.00071736 111535000 101155 38842 193715 6143.7 47555 196976 50864 56300 235440 52317 TRUE FALSE FALSE 94064.55686 35764.01846 268726.6359 14302.84409 41590.20847 172675.1038 38137.28922 43481.71902 255848.1288 39216.48267 2.398597489 0.91196395 6.852390055 0.364715117 1.060528779 4.403125728 0.972481126 1.108761318 6.523994793 1 15.25917253 S(ph)PSPKPT(ph)K ddPTM_HeLa_A485_30min_R1 2 SPSPKPTK 8 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 S(0.973)PS(0.19)PKPT(0.837)K;S(0.999)PS(0.001)PKPT(1)K ; 128.08 0.0096086 4212300000 3211100 1641100 622110 8159000 1062820 2641830 2689030 2961800 1810670 7225300 TRUE FALSE FALSE 3925398.117 1833012.369 852254.3772 8604705.51 957001.909 2780152.134 2114496.773 2235413.906 2174054.861 5424165.682 0.723686987 0.337934436 0.157121745 1.586364801 0.176433016 0.512549265 0.389828943 0.412121244 0.400809081 1 22.37096982 -10.80694197 10.37232605 1.004777877 0.519497118 0.12028604 0.387859844 0.041861676 0.000779161 0.366850243 0.089245549 1.56E-11 10.80694197 -0.48528076 S(ph)PSPKPT(ph)K ddPTM_HeLa_A486_30min_R1 4 SPSPKPTK 8 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BMS0;Q15287-3;Q15287-2;H3BV80 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 2 0 S(0.944)PS(0.097)PKPT(0.959)K;S(0.828)PS(0.311)PKPT(0.861)K;S(0.988)PS(0.082)PKPT(0.93)K;S(0.973)PS(0.156)PKPT(0.871)K ;;; 61.435 0.015528 12381500000 8577800 3312860 2380630 3745250 2300760 13810600 6519780 5520900 8010200 16891900 TRUE FALSE FALSE 7976540.516 3050336.908 3302473.691 8719131.274 2012177.227 12106788.59 4888462.085 4263911.59 8704530.586 12662058.29 0.629956073 0.240903717 0.260816497 0.688602996 0.158913913 0.956146964 0.386071677 0.336747114 0.68744989 1 23.59400861 -14 0.192543206 3.337001083 0.377838485 0.32186274 0.234952381 161.5082692 1.584702704 144.3323848 0.60186085 1.00E-14 14 -2.959162598 S(ph)PSPNIR ddPTM_HeLa_A486_30min_R1 1 SPSPNIR 7 0 A2AJT9-3;A2AJT9-2;A2AJT9 A2AJT9-3 CXorf23 Uncharacterized protein CXorf23 1 0 S(0.5)PS(0.5)PNIR 63.565 0.030524 286610000 43204 25383 30980 68970 46212 39564 44457 38321 31356 67446 TRUE FALSE FALSE 40175.62271 23371.55864 42976.28567 160565.6456 40415.66005 34682.99594 33333.38838 29596.14484 34073.96333 50557.0826 0.794658644 0.462280603 0.8500547 3.175927828 0.799406492 0.686016561 0.659321833 0.585400567 0.673970126 1 15.62562559 -5.971740994 24.9999923 0.69690195 1.321026603 0.147618023 0.691616846 439.268153 388606.9302 0.229580544 0.260315584 1.07E-06 5.971740994 0.624124654 S(ph)PSPPPT(ph)RR ddPTM_HeLa_A485_30min_R1 1 SPSPPPTRR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(0.995)PS(0.013)PPPT(0.992)RR 68.515 0.0059857 0 370740 454610 409060 436360 581690 478010 593820 613930 419110 532610 TRUE FALSE FALSE 453209.834 507772.6849 560388.3164 460197.2419 523774.9012 503037.8645 466945.5059 463362.7049 503221.5327 399840.129 1.133477611 1.269939279 1.401530952 1.150953115 1.309960815 1.258097495 1.167830521 1.158869937 1.258556849 1 18.60906375 -9.929426177 0.325045553 0.883955655 1.262860573 0.444421518 0.079152119 12.2088639 1.07290958 1.420691623 0.076270403 1.18E-10 9.929426177 0.378904918 S(ph)PSPPT(ph)QHTGQPPGQPSAPSQLSAPR ddPTM_HeLa_A485_30min_R1 1 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-2;I3L460;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 2 0 S(0.995)PS(0.086)PPT(0.826)QHT(0.093)GQPPGQPSAPSQLSAPR 105.03 0.00094164 1285600000 56066 73174 70381 71604 66275 49956 79838 62011 65669 99274 TRUE FALSE FALSE 68537.68827 81731.06277 96417.8607 75515.54521 59676.42829 52571.61891 62779.95908 46802.70502 78848.16595 74526.8188 0.919637915 1.096666463 1.293733749 1.01326672 0.80073763 0.70540538 0.842380771 0.627998159 1.057983786 1 16.18547206 -5.642729964 4.223044296 0.81428961 1.109581998 0.399068587 0.14587318 0.193347915 6.147261517 0.043143968 0.056342665 2.28E-06 5.642729964 0.295292387 S(ph)PSPPTQHTGQPPGQPSAPSQLSAPRR ddPTM_HeLa_A485_30min_R1 1 SPSPPTQHTGQPPGQPSAPSQLSAPRR 27 1 Q68EM7-2;I3L460;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 S(0.54)PS(0.459)PPTQHTGQPPGQPSAPSQLSAPRR 136.73 2.17E-06 605180000 14959 81020 35006 9090.1 46017 82217 75910 151720 25191 20434 TRUE FALSE FALSE 18286.57794 90494.58422 47956.17612 9586.669146 41435.3859 86521.75499 59691.20837 114510.4321 30246.60263 15340.17986 1.192070635 5.899186649 3.126180824 0.62493851 2.7011017 5.640204729 3.891167439 7.46473856 1.97172412 1 13.90502778 -6.227928027 23.73774402 4.391213335 2.793373895 0.067440752 2.136409882 780.7198487 553021.7636 0.689152274 0.689095727 5.92E-07 6.227928027 -1.597839439 S(ph)PSPRPNMPVR ddPTM_HeLa_A485_30min_R1 2 SPSPRPNMPVR 11 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 S(0.96)PS(0.04)PRPNMPVR;S(0.999)PS(0.001)PRPNMPVR ; 92.295 0.0012013 1112890000 331510 427970 408580 422710 421770 412070 425770 421380 349050 504760 TRUE FALSE FALSE 405253.2558 478017.3687 559730.7444 445801.5769 379777.0979 433645.348 334800.7613 318035.8943 419101.1333 378932.6214 1.069459933 1.261483814 1.477124726 1.176466611 1.002228566 1.144386425 0.883536392 0.839294049 1.106004365 1 18.53158182 -5.667538226 3.534876667 0.987788359 1.276266608 0.497778402 0.125038505 0.196172579 4.778678114 0.040180965 0.05243113 2.15E-06 5.667538226 0.288478249 S(ph)PSPRPNMPVR ddPTM_HeLa_A486_30min_R1 1 SPSPRPNMPVR 11 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 S(0.987)PS(0.013)PRPNMPVR 81.904 0.0028849 567030000 166660 184070 140780 88311 167080 180690 165820 156030 150200 218290 TRUE FALSE FALSE 154977.9946 169483.6228 195293.7862 205592.471 146123.2684 158398.3049 124330.0821 120505.3751 163219.4569 163628.7632 0.947131737 1.03578136 1.193517463 1.256456793 0.893017008 0.968034604 0.759830238 0.736455943 0.997498568 1 17.32006685 -5.861206031 8.31564323 0.874850364 1.108714004 0.454070456 0.115035917 0.229498531 17.07559539 0.037751133 0.042884153 1.38E-06 5.861206031 0.233863639 S(ph)PSPSFR ddPTM_HeLa_A485_30min_R1 4 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 S(0.998)PS(0.002)PSFR;S(0.998)PS(0.002)PSFR;S(0.977)PS(0.022)PSFR;S(0.941)PS(0.059)PSFR ;;; 118.5 0.002215 2554080000 310861 459962 463012 341315 537576 471935 510451 579487 449091 455326 TRUE FALSE FALSE 380010.957 513750.5548 634299.4063 359960.1742 484053.0459 496644.7868 401388.9738 437366.9046 539219.4444 341821.6079 1.11172304 1.50297858 1.855644558 1.053064423 1.416098441 1.452935612 1.174264484 1.279518013 1.577487883 1 18.38288407 -11.19921211 2.094599312 0.00017444 1.382519107 0.200771798 0.227663627 3659869.836 742741.688 17311847.93 0.056774222 6.32E-12 11.19921211 1.382344667 S(ph)PSPSFR ddPTM_HeLa_A486_30min_R1 2 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 S(0.999)PS(0.001)PSFR;S(0.999)PS(0.001)PSFR ; 141.52 0.0014952 1668550000 205280 261230 234950 54490 289690 218080 232874 244170 198728 208234 TRUE FALSE FALSE 190890.9321 240529.1834 325928.9322 126855.4738 253354.3789 191175.5069 174606.4621 188577.8212 215953.903 156090.851 1.222947603 1.54095632 2.088071979 0.812702813 1.623121261 1.224770738 1.118620733 1.208128599 1.383514163 1 17.25202645 -5.267826522 24.99882778 1.220300697 1.609688402 0.316233735 0.282351205 642.8781111 2516179.659 0.077739959 0.118514309 5.40E-06 5.267826522 0.389387704 S(ph)PSPSVR ddPTM_HeLa_A486_30min_R1 1 SPSPSVR 7 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.499)PS(0.496)PS(0.006)VR 125.5 0.0017542 481170000 196180 227100 198270 60451 229590 198260 202850 193840 168370 200540 TRUE FALSE FALSE 182428.7951 209103.7689 275045.4539 140732.983 200792.6814 173800.697 152094.7845 149706.8635 182964.4472 150323.4787 1.213574863 1.391025346 1.829690586 0.936200946 1.335737325 1.156177987 1.011783294 0.995898078 1.217138193 1 17.19771083 -5.281888401 24.99932987 1.102433507 1.469389848 0.484836785 0.18154022 696.5664384 851564.3705 0.051528131 0.076528788 5.23E-06 5.281888401 0.366956341 S(ph)PSPVLR ddPTM_HeLa_A485_30min_R1 2 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(0.682)PS(0.318)PVLR;S(0.882)PS(0.118)PVLR ; 113.7 0.0026703 2409770000 701600 801950 824930 790920 966210 827410 1005880 859900 774170 978460 TRUE FALSE FALSE 857668.4995 895731.0765 1130105.935 834125.9569 870010.7398 870731.9082 790965.5207 649008.1767 929538.8179 734547.9292 1.167614073 1.219431763 1.538505372 1.13556369 1.184416571 1.185398357 1.076805868 0.883547759 1.265456999 1 19.4864971 -6.245585434 1.149274764 1.047914641 1.284877972 0.319373888 0.135169541 0.56337044 1.541351993 0.070148824 0.064162877 5.68E-07 6.245585434 0.236963331 S(ph)PSPVLR ddPTM_HeLa_A486_30min_R1 2 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(0.817)PS(0.183)PVLR;S(0.794)PS(0.206)PVLR ; 110.31 0.002992 2731180000 850230 867780 496620 328967 837710 900870 1042770 1016510 726140 1089550 TRUE FALSE FALSE 790633.2676 799013.9524 688924.5639 765851.8011 732636.6005 789729.8188 781857.9167 785072.8633 789082.3999 816719.5882 0.968059636 0.978321034 0.843526437 0.93771695 0.897047911 0.966953444 0.957315005 0.961251419 0.966160738 1 19.6394813 -6.290352795 22.37250984 0.967100549 0.924087802 0.274163508 0.036735619 298.8424735 231235.0972 0.013300384 0.011733512 5.12E-07 6.290352795 -0.043012747 S(ph)PSPVQGK ddPTM_HeLa_A486_30min_R1 2 SPSPVQGK 8 0 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 S(0.899)PS(0.101)PVQGK;S(0.784)PS(0.216)PVQGK ; 100.57 0.0021417 2801200000 6111100 4817500 3746000 2089000 5120600 6288900 6660200 5806000 5136400 7423400 TRUE FALSE FALSE 5682743.448 4435743.755 5196551.521 4863297.572 4478326.6 5513039.459 4993747.516 4484100.544 5581627.288 5564532.322 1.021243677 0.797145833 0.933870309 0.873981368 0.80479838 0.990746237 0.897424478 0.805836014 1.00307213 1 22.40782901 -7.794016061 24.58863169 1.001536536 0.889103519 0.272101158 0.072523115 231.8701994 175007.1274 0.065853947 0.017009112 1.61E-08 7.794016061 -0.112433016 S(ph)PSPYYSR ddPTM_HeLa_A485_30min_R1 6 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 0 S(0.992)PS(0.008)PYYSR;S(0.999)PS(0.001)PYYSR;S(0.988)PS(0.012)PYYSR;S(0.893)PS(0.107)PYYSR;S(0.968)PS(0.032)PYYSR;S(0.958)PS(0.042)PYYSR ;;;;; 119.68 0.00078945 5527350000 1110211 1498540 1556230 1488130 1668860 1198200 1347300 1335150 1429440 2427360 TRUE FALSE FALSE 1357173.607 1673781.217 2131944.237 1569422.774 1502702.439 1260935.899 1059438.349 1007702.369 1716315.496 1822263.824 0.74477339 0.918517503 1.169942688 0.861248933 0.824634951 0.69196122 0.58138582 0.552994773 0.941858952 1 20.79730041 -5.870078254 2.4591006 0.717675485 0.946011898 0.173830012 0.165281289 0.393576802 4.849665696 0.056471286 0.066858174 1.35E-06 5.870078254 0.228336413 S(ph)PSPYYSR ddPTM_HeLa_A486_30min_R1 5 SPSPYYSR 8 0 P62995;P62995-3;H7BXF3;H7C2L4;Q13595;Q13595-3;Q13595-4 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 0 S(1)PSPYYSR;S(0.968)PS(0.032)PYYSR;S(0.981)PS(0.019)PYYSR;S(0.965)PS(0.035)PYYSR;S(0.996)PS(0.004)PYYSR ;;;; 173.39 1.80E-05 6099160000 893950 1194250 976520 311618 1346550 1047870 1049880 1069680 981850 1052300 TRUE FALSE FALSE 831288.7214 1099613.281 1354654.696 725462.4523 1177653.143 918594.4534 787188.9195 826137.215 1066957.549 788797.2307 1.053868712 1.394037958 1.71736746 0.919707149 1.492973222 1.164550809 0.997961059 1.047337874 1.352638558 1 19.58929496 -6.506268546 23.27235123 1.10026156 1.321125046 0.172146333 0.226148459 522.1096884 731525.0641 0.079953918 0.0685952 3.12E-07 6.506268546 0.220863486 S(ph)PSQDFSFIEDTEILDSAMYR ddPTM_HeLa_A485_30min_R1 2 SPSQDFSFIEDTEILDSAMYR 21 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.41)PS(0.41)QDFS(0.157)FIEDT(0.022)EILDSAMYR;S(0.367)PS(0.367)QDFS(0.267)FIEDTEILDSAMYR ; 148.91 8.31E-10 14352000 19271 27593.2 25914.1 14500.8 30004.9 22708.3 23158.5 24771.4 23119 21582.1 TRUE FALSE FALSE 23557.76747 30819.98471 35500.80397 15292.94199 27017.5068 23897.27147 18210.49729 18696.17531 27758.77124 16202.07966 1.453996522 1.902223996 2.191126369 0.943887594 1.667533266 1.474950869 1.123960484 1.15393676 1.713284456 1 13.98389139 -5.258951123 24.99980921 1.318876739 1.854426452 0.41858496 0.297484541 221.2035382 2222445.422 0.080956062 0.132194836 5.51E-06 5.258951123 0.535549713 S(ph)PSQDFSFIEDTEILDSAMYR ddPTM_HeLa_A486_30min_R1 1 SPSQDFSFIEDTEILDSAMYR 21 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.417)PS(0.417)QDFS(0.167)FIEDTEILDSAMYR 174.53 2.46E-14 17835000 6556.1 9715.2 10348 2515 12015 8239 6370.6 5904.5 8112.5 6388.3 TRUE FALSE FALSE 6096.551246 8945.33217 14355.02273 5855.047101 10507.96666 7222.555948 4776.608499 4560.174244 8815.698032 4788.628099 1.273131076 1.86803652 2.9977318 1.22269823 2.194358477 1.508272474 0.99748997 0.952292421 1.840965272 1 12.22539668 -6.495713333 5.029905598 1.19724589 1.928009894 0.295816522 0.519659294 0.245728391 16.71851408 0.192269511 0.160808131 3.19E-07 6.495713333 0.730764004 S(ph)PSQGSYSR ddPTM_HeLa_A485_30min_R1 4 SPSQGSYSR 9 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)PSQGSYSR;S(1)PSQGSYSR;S(0.986)PS(0.014)QGSYSR;S(0.994)PS(0.006)QGSYSR ;;; 111.52 0.00086857 1026500000 223086 320410 375021 191335 349398 318349 271264 318969 285562 292478 TRUE FALSE FALSE 272710.7111 357879.1623 513756.8738 201787.1466 314610.7083 335017.2614 213306.2304 240741.3526 342871.6741 219568.6173 1.242029551 1.629919461 2.33984656 0.919016338 1.432858267 1.525797564 0.97147868 1.096428787 1.561569583 1 17.74431234 -5.285958917 24.99810114 1.231167143 1.726530882 0.342688366 0.330658873 895.0616052 912529.0668 0.093890446 0.139334105 5.18E-06 5.285958917 0.495363739 S(ph)PSQGSYSR ddPTM_HeLa_A486_30min_R1 4 SPSQGSYSR 9 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(0.997)PS(0.003)QGSYSR;S(0.999)PS(0.001)QGSYSR;S(0.995)PS(0.005)QGSYSR;S(0.993)PS(0.007)QGSYSR ;;; 121.61 0.00038541 1073210000 251480 280605 363904 68922.4 367430 234072 254572 271190 269342 251994 TRUE FALSE FALSE 233852.5506 258368.8379 504817.3745 160454.8303 321343.5033 205194.5765 190875.393 209445.957 292688.7814 188893.0622 1.238015562 1.367804804 2.672503525 0.849447981 1.701192725 1.086300228 1.010494461 1.108807039 1.549494608 1 17.52721019 S(ph)PSQLR ddPTM_HeLa_A486_30min_R1 1 SPSQLR 6 0 O00499-6;O00499-2;O00499;O00499-11 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 S(1)PSQLR 107.74 0.0096375 1720200000 354700 351100 344670 94824 351870 358190 375160 347080 368880 405620 TRUE FALSE FALSE 329837.3617 323277.5573 478135.4546 220755.0641 307735.1835 314000.1596 281291 268057.4607 400854.8154 304050.1119 1.084812499 1.063237752 1.572554773 0.726048291 1.012119948 1.032725026 0.925146839 0.881622635 1.318384042 1 18.21394959 -5.275933432 24.97611307 0.980823137 1.22250533 0.272034572 0.190446691 1053.062939 1814633.015 0.052668781 0.078510603 5.30E-06 5.275933432 0.241682194 S(ph)PSQYHDFAEK ddPTM_HeLa_A485_30min_R1 2 SPSQYHDFAEK 11 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 S(0.97)PS(0.029)QYHDFAEK;S(0.991)PS(0.009)QYHDFAEK ; 147.12 6.06E-07 526480000 553310 647740 590740 492790 770420 635580 755490 802320 591850 777670 TRUE FALSE FALSE 676391.9006 723487.5584 809279.3087 519709.8699 693714.2797 668857.986 594073.3897 605549.762 710628.8662 583811.181 1.158579902 1.239249233 1.386200428 0.890201981 1.188251103 1.145675191 1.017577959 1.037235637 1.217223804 1 19.15514232 -5.249258747 24.99976131 1.078218199 1.259133779 0.409121169 0.104622027 789.2235572 1619814.853 0.027937764 0.047927154 5.63E-06 5.249258747 0.18091558 S(ph)PSQYHDFAEK ddPTM_HeLa_A486_30min_R1 1 SPSQYHDFAEK 11 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 S(0.98)PS(0.02)QYHDFAEK 123.42 5.04E-05 258960000 303120 279620 210000 35473 315240 259990 289630 284500 264440 230530 TRUE FALSE FALSE 281872.8533 257461.8928 291317.624 82582.93671 275699.6597 227915.0772 217161.5106 219725.5606 287361.8721 172803.7875 1.631172889 1.489908853 1.685828929 0.477900039 1.595449172 1.318924084 1.25669416 1.271532087 1.662937348 1 17.39877531 S(ph)PSSDLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_HeLa_A485_30min_R1 2 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 S(0.332)PS(0.332)S(0.332)DLDT(0.005)DAEGDDFELLDQSELSQLDPASSR;S(0.333)PS(0.333)S(0.333)DLDT(0.001)DAEGDDFELLDQSELSQLDPASSR ; 173.98 6.16E-15 153895000 18047.7 24104 23398 20128.6 25820 20513.1 20737.4 28610 17842.5 35337 TRUE FALSE FALSE 22062.3486 26922.75312 32053.89387 21228.17445 23249.27014 21587.1342 16306.68508 21593.35264 21423.32609 26528.13623 0.831658448 1.01487541 1.208297997 0.800213564 0.876400435 0.813744848 0.614693959 0.813979258 0.807569967 1 14.6952357 -5.308828635 24.58777757 0.804109265 1.017937147 0.354673746 0.12273596 331.5557151 172025.9521 0.0348843 0.051741928 4.91E-06 5.308828635 0.213827882 S(ph)PSSDLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_HeLa_A486_30min_R1 1 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 S(0.332)PS(0.332)S(0.332)DLDT(0.003)DAEGDDFELLDQSELSQLDPASSR 115.66 3.83E-05 78509000 7972.2 5328.7 6569.7 3254.1 6919.6 5205 6646.8 6324.5 6953.7 7226.7 TRUE FALSE FALSE 7413.389948 4906.434405 9113.663783 7575.709253 6051.679245 4562.860021 4983.700337 4884.549413 7556.452315 5417.087282 1.368519568 0.905732943 1.682391903 1.398483882 1.117146343 0.842308751 0.919996315 0.90169295 1.394929031 1 12.40330162 -5.930220847 4.811755472 0.997588663 1.329909771 0.317797156 0.225488452 0.256771276 11.38818205 0.072723088 0.082467679 1.17E-06 5.930220847 0.332321108 S(ph)PSSDSWTCADTSTER ddPTM_HeLa_A486_30min_R1 2 SPSSDSWTCADTSTER 16 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 S(0.473)PS(0.473)S(0.054)DSWTCADTSTER;S(0.868)PS(0.132)SDSWTCADTSTER ; 192.4 3.47E-18 189170000 64497 94800 66515 24343.5 95984 69634 71052 80842 53064 65385 TRUE FALSE FALSE 59976.09336 87287.70274 92271.38933 56672.89825 83944.7917 61043.26507 53274.03809 62436.04137 57663.63025 49012.17042 1.223697968 1.780939346 1.88262198 1.156302563 1.712733613 1.245471575 1.086955294 1.273888523 1.176516562 1 15.58085241 -6.405092583 5.148848933 1.158233839 1.559183265 0.443131151 0.222973223 0.226934589 8.679126762 0.079854919 0.069719256 3.93E-07 6.405092583 0.400949426 S(ph)PSSDSWTCADTSTERR ddPTM_HeLa_A485_30min_R1 1 SPSSDSWTCADTSTERR 17 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 S(0.953)PS(0.038)S(0.009)DSWTCADTSTERR 126.43 1.03E-05 591380000 42676 85747 73999 50654 70540 58278 77519 78420 49307 67565 TRUE FALSE FALSE 52169.12897 95774.36575 101374.3095 53421.09976 63516.78992 61329.34597 60956.43238 59187.37204 59202.46263 50722.28894 1.028524738 1.888210642 1.998614644 1.053207591 1.252246128 1.209120236 1.20176817 1.166890795 1.167188308 1 15.63033223 -5.278180038 24.96796974 1.165887026 1.663426093 0.446353054 0.248356928 686.9786465 1024597.412 0.069431033 0.103300911 5.27E-06 5.278180038 0.497539067 S(ph)PSSDSWTCADTSTERR ddPTM_HeLa_A486_30min_R1 1 SPSSDSWTCADTSTERR 17 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 S(0.919)PS(0.075)S(0.007)DSWTCADTSTERR 136.81 3.21E-06 491190000 86794 83122 47278 37174 92671 57016 90590 83685 59768 100200 TRUE FALSE FALSE 80710.1888 76535.10999 65585.30775 86542.95067 81047.33906 49981.94562 67923.42384 64631.75233 64948.73836 75109.26781 1.074570305 1.018983572 0.873198603 1.152227324 1.079059102 0.665456435 0.904328132 0.860503027 0.864723359 1 16.19670331 -6.224208567 24.99977951 0.853116393 1.035473704 0.440449869 0.101620762 545.4240991 366241.9769 0.03326528 0.033264409 5.97E-07 6.224208567 0.18235731 S(ph)PSSGSGGGGPKPYK ddPTM_HeLa_A486_30min_R1 1 SPSSGSGGGGPKPYK 15 1 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 0 S(0.976)PS(0.011)S(0.011)GS(0.002)GGGGPKPYK 56.599 0.0058526 0 187250 281410 113860 223340 186280 251710 390350 310360 177660 425800 TRUE FALSE FALSE 174124.742 259110.0467 157949.6413 519946.807 162915.0254 220656.5794 292680.3013 239697.8031 193059.7118 319176.9085 0.545543043 0.811806994 0.494865503 1.629023883 0.510422343 0.691330023 0.916984573 0.750987295 0.604867416 1 18.28399676 -12.68679417 0.018138229 1.836639575 7.94E-06 0.024052009 0.317807713 22736.42457 38.98449938 2451.339056 1580.800995 2.06E-13 12.68679417 -1.836631633 S(ph)PSSKPSLAVAVDSAPEVAVK ddPTM_HeLa_A486_30min_R1 3 SPSSKPSLAVAVDSAPEVAVK 21 1 Q5SRN1;O60508 Q5SRN1 CDC40 Pre-mRNA-processing factor 17 1 0 S(0.949)PS(0.025)S(0.025)KPSLAVAVDSAPEVAVK;S(0.987)PS(0.012)SKPSLAVAVDSAPEVAVK;S(0.608)PS(0.117)S(0.117)KPS(0.157)LAVAVDSAPEVAVK ;; 222.05 6.62E-36 1804750000 2876542 2798910 1210154 975773 1911065 3102095 3015745 2671210 2310094 3872601 TRUE FALSE FALSE 2674911.26 2577114.178 1678758.038 2271648.857 1671361.408 2719390.059 2261173.704 2063033.795 2510334.808 2902876.503 0.92146919 0.887779475 0.578308459 0.782550982 0.575760424 0.936791509 0.778942439 0.710686036 0.864774924 1 21.46905177 -8.028793496 4.996731731 0.999885994 0.769043715 0.260668832 0.119572615 0.248131745 22.45465674 0.115665619 0.030148048 9.36E-09 8.028793496 -0.230842278 S(ph)PSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK ddPTM_HeLa_A485_30min_R1 5 SPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK 35 2 Q5SRN1;O60508 Q5SRN1 CDC40 Pre-mRNA-processing factor 17 1 0 S(0.919)PS(0.027)S(0.027)KPS(0.027)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.925)PS(0.029)S(0.045)KPS(0.001)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.25)PS(0.25)S(0.25)KPS(0.25)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.779)PS(0.097)S(0.097)KPS(0.026)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.928)PS(0.027)S(0.035)KPS(0.01)LAVAVDSAPEVAVKEDLETGVHLDPAVK ;;;; 247.79 5.58E-52 900994000 342882 248906 153372 487720 407342 453118 712720 786522 284284 718707 TRUE FALSE FALSE 419154.918 278013.3915 210110.6851 514362.9086 366785.6002 476842.5578 560441.5496 593626.2463 341337.1912 539546.5717 0.776865131 0.515272279 0.389420851 0.953324394 0.679803412 0.883783871 1.038726922 1.100231708 0.632637124 1 19.04138797 -5.698905317 1.27201807 0.938270484 0.572533049 0.383373804 0.177371472 0.449457148 1.522155826 0.06971467 0.106642037 2.00E-06 5.698905317 -0.365737435 S(ph)PSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK ddPTM_HeLa_A486_30min_R1 3 SPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK 35 2 Q5SRN1;O60508 Q5SRN1 CDC40 Pre-mRNA-processing factor 17 1 0 S(0.973)PS(0.022)S(0.005)KPSLAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.326)PS(0.326)S(0.326)KPS(0.021)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.313)PS(0.313)S(0.313)KPS(0.062)LAVAVDSAPEVAVKEDLETGVHLDPAVK ;; 303.89 1.60E-94 877240000 624350 473613 193394 352673 472685 643540 877150 811380 394451 945820 TRUE FALSE FALSE 580586.2891 436082.181 268281.3361 821040.5671 413396.4397 564146.5778 657677.7925 626646.4863 428642.3303 708980.5157 0.818903025 0.615083449 0.378404385 1.158058013 0.583085756 0.795715207 0.92763874 0.883869828 0.604589718 1 19.43538645 -5.24603174 24.99679871 0.835382575 0.605225646 0.260142943 0.189149743 1194.217707 1937452.912 0.049984853 0.086176879 5.68E-06 5.24603174 -0.23015693 S(ph)PSSNDKHVMSR ddPTM_HeLa_A485_30min_R1 1 SPSSNDKHVMSR 12 1 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C103 Q9H8V3-2 ECT2 Protein ECT2 1 0 S(0.999)PSSNDKHVMSR 123.02 2.87E-05 187540000 36260 49623 38896 25484 60294 54970 68493 96154 40763 46162 TRUE FALSE FALSE 44325.9119 55425.97819 53285.249 26876.12639 54290.91765 57848.1442 53858.91101 72572.08074 48943.7602 34654.66295 1.279074968 1.599380097 1.537606904 0.775541416 1.566626625 1.669274472 1.554160578 2.094150529 1.412328271 1 15.08076187 -5.971493823 24.99821449 1.615220128 1.315872841 0.105292633 0.328411308 397.6321407 348697.9054 0.100263722 0.113686795 1.07E-06 5.971493823 -0.299347287 S(ph)PSSNDKHVMSR ddPTM_HeLa_A486_30min_R1 2 SPSSNDKHVMSR 12 1 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C103 Q9H8V3-2 ECT2 Protein ECT2 1 0 S(0.994)PS(0.005)S(0.001)NDKHVMSR;S(0.986)PS(0.013)S(0.001)NDKHVMSR ; 111.06 0.0002376 276540000 110598 103776 82774 17735.4 134409 83460 107565 126321 82501 95127 TRUE FALSE FALSE 102845.6513 95552.41181 114826.3096 41288.9075 117550.1699 73163.55376 80651.09929 97560.46587 89652.25311 71306.58003 1.442302397 1.340022362 1.610318564 0.579033625 1.648517849 1.026042109 1.131047082 1.368183214 1.257278824 1 16.12174759 S(ph)PSSQTPNSR ddPTM_HeLa_A485_30min_R1 2 SPSSQTPNSR 10 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 S(0.983)PS(0.017)SQTPNSR;S(0.999)PS(0.001)SQTPNSR ; 136.27 4.09E-05 667100000 37604 54939 47212 40150 54695 53898 58289 61186 46750 53231 TRUE FALSE FALSE 45968.88007 61363.63814 64677.68346 42343.29283 49249.37375 56720.01594 45835.07897 46180.03756 56132.29618 39961.49134 1.150329443 1.535569271 1.618500243 1.059602417 1.232420816 1.419366846 1.146981192 1.155613467 1.404659694 1 15.2863228 -13.99999997 0.091337569 0.025952303 1.546304783 0.213547068 0.175914767 319.822045 2.020538353 60.58655086 4.081351678 1.00E-14 13.99999997 1.52035248 S(ph)PSSQTPNSR ddPTM_HeLa_A486_30min_R1 4 SPSSQTPNSR 10 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 S(0.99)PS(0.01)SQTPNSR;S(0.992)PS(0.008)SQTPNSR;S(0.996)PS(0.003)SQTPNSR;S(0.997)PS(0.003)SQTPNSR ;;; 135.1 4.88E-05 3358420000 549861 414892 479756 157204.2 480672 487043 477392 450405 474604 527936 TRUE FALSE FALSE 511318.5834 382014.4469 665530.3715 365979.3223 420381.6357 426956.5866 357943.4723 347857.6138 515743.0569 395737.3893 1.292065388 0.965323109 1.681747516 0.924803499 1.062274243 1.078888672 0.904497482 0.879011241 1.303245715 1 18.59418385 S(ph)PSSVTGNALWK ddPTM_HeLa_A485_30min_R1 2 SPSSVTGNALWK 12 0 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 S(0.962)PS(0.037)S(0.001)VTGNALWK;S(0.998)PS(0.002)SVTGNALWK ; 172.58 1.05E-10 1212000000 358380 375420 305790 400720 444470 375130 466850 496400 355120 481330 TRUE FALSE FALSE 438100.3946 419322.1033 418914.446 422610.3189 400217.0062 394771.2267 367103.6837 374657.1217 426389.3266 361343.2892 1.212421561 1.160453551 1.15932538 1.169553529 1.107581123 1.092510193 1.015941612 1.036845385 1.180011749 1 18.46301058 -5.961691224 1.631869468 1.062009007 1.177250183 0.544120432 0.047937102 0.30019687 1.633773327 0.018445217 0.021075186 1.09E-06 5.961691224 0.115241176 S(ph)PSSVTGNALWK ddPTM_HeLa_A486_30min_R1 2 SPSSVTGNALWK 12 0 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 S(1)PSSVTGNALWK;S(0.994)PS(0.006)S(0.001)VTGNALWK ; 255.15 3.08E-33 1013880000 526240 502360 315760 180646 455890 471720 552700 482900 412720 559930 TRUE FALSE FALSE 489353.2935 462551.164 438030.7283 420553.0173 398708.0252 413523.9825 414408.6141 372954.2116 448494.9019 419719.8835 1.165904482 1.102047299 1.043626346 1.001984976 0.949938378 0.985238009 0.987345681 0.888578851 1.068557673 1 18.67906728 -4.706101383 1.188868735 0.974447386 1.187397438 0.67594557 0.042641446 0.421707973 0.849974284 0.013046731 0.092839833 1.97E-05 4.706101383 0.212950052 S(ph)PSTDIFDMIPFSPISHQSSMPTR ddPTM_HeLa_A485_30min_R1 2 SPSTDIFDMIPFSPISHQSSMPTR 24 0 H0Y6R1;H7BZV7;Q9UBP9-3;Q9UBP9-4;Q9UBP9 H0Y6R1 GULP1 PTB domain-containing engulfment adapter protein 1 1 0 S(0.899)PS(0.05)T(0.05)DIFDMIPFSPISHQSSMPTR;S(0.946)PS(0.027)T(0.027)DIFDMIPFSPISHQSSMPTR ; 149.66 1.76E-09 101865000 10577.4 26162 28548 6067.9 29177 16187.5 16700 19401.4 19479.6 5472.1 TRUE FALSE FALSE 12930.30614 29221.41832 39109.09318 6399.374012 26272.03543 17035.05247 13131.90857 14643.17623 23388.97704 4108.006177 3.14758683 7.113284904 9.520212848 1.55778101 6.395325203 4.146793295 3.196662325 3.564545816 5.693510681 1 12.00422264 -5.268542625 24.98754756 3.873632673 6.645653882 0.285457313 2.112782833 722.7594922 2542497.354 0.580567884 0.882026867 5.39E-06 5.268542625 2.772021209 S(ph)PSTDIFDMIPFSPISHQSSMPTR ddPTM_HeLa_A486_30min_R1 2 SPSTDIFDMIPFSPISHQSSMPTR 24 0 H0Y6R1;H7BZV7;Q9UBP9-3;Q9UBP9-4;Q9UBP9 H0Y6R1 GULP1 PTB domain-containing engulfment adapter protein 1 1 0 S(0.788)PS(0.106)T(0.106)DIFDMIPFSPISHQSSMPTR;S(0.804)PS(0.098)T(0.098)DIFDMIPFSPISHQSSMPTR ; 151.45 1.45E-09 52779000 16981 21277.2 28505 1484.28 29081 10321.6 13644.9 14770.7 22124.4 7793.1 TRUE FALSE FALSE 15790.71959 19591.11718 39542.89939 3455.478851 25433.38981 9048.225934 10230.8017 11407.73405 24042.16081 5841.657035 2.703123359 3.35369178 6.769123752 0.591523746 4.35379716 1.548914269 1.751352679 1.952825026 4.11564059 1 12.51216194 -5.279321956 24.99662176 2.272877203 4.183151414 0.28617928 1.504575012 1085.973435 1517992.737 0.413701779 0.615016036 5.26E-06 5.279321956 1.910274211 S(ph)PSTLLPK ddPTM_HeLa_A485_30min_R1 3 SPSTLLPK 8 0 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 S(0.42)PS(0.42)T(0.161)LLPK;S(0.738)PS(0.262)TLLPK;S(0.803)PS(0.193)T(0.004)LLPK ;; 157.34 9.44E-05 10684774000 957506 845086 668068 1042630 1005688 872753 1120518 1086015 834364 1291010 TRUE FALSE FALSE 1170499.906 943911.4564 915214.1538 1099586.237 905558.1715 918448.9975 881110.1755 819668.1184 1001813.202 969184.9663 1.207715707 0.973922924 0.944313197 1.134547352 0.934350205 0.947650892 0.90912489 0.845729295 1.033665643 1 19.8864125 -5.794187359 24.52907419 0.935703293 1.049980967 0.316199063 0.084651774 195.3241894 146301.6091 0.02600108 0.029484753 1.61E-06 5.794187359 0.114277674 S(ph)PSTLLPK ddPTM_HeLa_A486_30min_R1 1 SPSTLLPK 8 0 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 S(0.672)PS(0.328)TLLPK 140.11 0.00042637 2385000000 2018900 1996400 1059500 762280 1720400 1770100 2133000 1893200 1563200 2137000 TRUE FALSE FALSE 1877385.536 1838197.993 1469766.774 1774626.363 1504611.39 1551723.059 1599300.839 1462159.688 1698699.435 1601881.29 1.171987929 1.147524479 0.917525402 1.107838873 0.93927771 0.968687922 0.998389112 0.912776557 1.060440274 1 20.61133581 -4.695876957 7.710861631 0.987337846 1.162650258 0.584845012 0.057870339 0.153501675 15.40778376 0.013896201 0.036960367 2.01E-05 4.695876957 0.175312411 S(ph)PSTTYLHTPTPSEDAAIPSK ddPTM_HeLa_A485_30min_R1 3 SPSTTYLHTPTPSEDAAIPSK 21 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(0.878)PS(0.083)T(0.019)T(0.019)YLHTPTPSEDAAIPSK;S(0.942)PS(0.033)T(0.009)T(0.016)YLHTPTPSEDAAIPSK;S(0.966)PS(0.024)T(0.004)T(0.006)YLHTPTPSEDAAIPSK ;; 204.38 1.04E-26 8604500000 1322480 1388220 1005450 1147370 1462050 1366760 1669400 1791510 1124720 1493860 TRUE FALSE FALSE 1616661.113 1550560.253 1377407.795 1210047.918 1316483.168 1438321.44 1312719.052 1352139.364 1350440.987 1121468.194 1.441557702 1.382616342 1.228218332 1.078985498 1.173892559 1.282534313 1.170536141 1.205686769 1.204172347 1 20.09695727 -4.766930872 3.069442515 1.172870935 1.428825252 0.649934079 0.073118212 0.15025136 2.857094716 0.019213078 0.055423267 1.71E-05 4.766930872 0.255954317 S(ph)PSTTYLHTPTPSEDAAIPSK ddPTM_HeLa_A486_30min_R1 4 SPSTTYLHTPTPSEDAAIPSK 21 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(0.978)PS(0.016)T(0.002)T(0.004)YLHTPTPSEDAAIPSK;S(0.738)PS(0.082)T(0.082)T(0.082)Y(0.016)LHTPTPSEDAAIPSK;S(0.955)PS(0.027)T(0.006)T(0.011)YLHTPTPSEDAAIPSK;S(0.976)PS(0.023)TT(0.001)YLHTPTPSEDAAIPSK ;;; 245.41 9.80E-47 8730600000 1945410 2051740 1283230 480562 1995350 1772950 2171830 1955020 1638180 2050830 TRUE FALSE FALSE 1809046.805 1889152.65 1780131.022 1118772.622 1745074.597 1554221.455 1628415.163 1509904.624 1780178.761 1537288.819 1.176777442 1.228885962 1.157967846 0.72775695 1.135163786 1.011014609 1.059277308 0.982186694 1.1579989 1 20.55195681 -5.021532654 24.97775999 1.011290841 1.200480581 0.356067988 0.110410708 750.0494342 870054.6299 0.028897681 0.050674484 9.52E-06 5.021532654 0.18918974 S(ph)PSVAAMASPQLCR ddPTM_HeLa_A485_30min_R1 5 SPSVAAMASPQLCR 14 0 P25325-2 P25325-2 1 0 S(0.85)PS(0.15)VAAMASPQLCR;S(0.573)PS(0.427)VAAMASPQLCR;S(0.593)PS(0.407)VAAMASPQLCR;S(1)PSVAAMASPQLCR;S(0.906)PS(0.094)VAAMASPQLCR ;;;; 219.95 1.10E-27 1953560000 170172 196997 205025 200898 269506 234599 232580 247551 198648 262949 TRUE FALSE FALSE 208026.1743 220034.0855 280872.2793 211872.549 242673.0363 246882.2409 182887.383 186838.7291 238514.8315 197400.6535 1.053827181 1.114657331 1.422853847 1.073312298 1.229342619 1.250665773 0.926478103 0.946494988 1.208277821 1 17.59076724 -6.754940864 24.999945 1.015853971 1.194279246 0.320645902 0.121421464 182.7575074 703075.6999 0.047329533 0.035777138 1.76E-07 6.754940864 0.178425275 S(ph)PSVAAMASPQLCR ddPTM_HeLa_A486_30min_R1 5 SPSVAAMASPQLCR 14 0 P25325-2 P25325-2 1 0 S(0.581)PS(0.419)VAAMASPQLCR;S(0.601)PS(0.399)VAAMASPQLCR;S(1)PSVAAMASPQLCR;S(1)PSVAAMASPQLCR;S(0.918)PS(0.082)VAAMASPQLCR ;;;; 278.73 5.11E-49 2643960000 217884 336125 229406 82318 374851 306660 298931 284542 244795 268957 TRUE FALSE FALSE 202611.4568 309489.2309 318238.1469 191640.4641 327833.6922 268827.4071 224135.302 219757.9981 266014.0277 201608.4166 1.00497519 1.535100747 1.578496336 0.950557856 1.6260913 1.333413613 1.111735838 1.090023928 1.31945894 1 17.62119634 -6.732466357 7.372456783 1.137696565 1.354113952 0.170205466 0.222960912 0.330709088 62.63641294 0.084800024 0.064175504 1.85E-07 6.732466357 0.216417387 S(ph)PSVPKS(ph)PTPK ddPTM_HeLa_A485_30min_R1 1 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.999)PS(0.01)VPKS(0.964)PT(0.027)PK 58.071 0.037191 148230000 296640 176760 97418 505970 176710 183010 315820 188430 151400 603510 TRUE FALSE FALSE 362626.5446 197430.5444 133456.9721 533609.8599 159116.1319 192592.1206 248342.477 142217.2471 181784.5913 453066.0638 0.800383374 0.435765466 0.294564044 1.177774948 0.351198522 0.425086176 0.54813745 0.31389958 0.401231974 1 18.78936191 -10.20464563 5.273019403 1.000013109 0.523251494 0.232187174 0.257629528 9.16E-05 1.38E-05 0.247401655 0.059999884 6.24E-11 10.20464563 -0.476761615 S(ph)PSVPKS(ph)PTPK ddPTM_HeLa_A486_30min_R1 2 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.986)PS(0.062)VPKS(0.865)PT(0.087)PK;S(0.991)PS(0.027)VPKS(0.943)PT(0.04)PK ; 78.285 0.0091041 456700000 1103350 1116950 295520 522670 517160 1201530 1351820 983960 798530 2284500 TRUE FALSE FALSE 1026010.863 1028438.814 409953.2583 1216802.174 452292.9705 1053297.445 1013580.338 759933.7877 867747.2233 1712446.33 0.599149208 0.600567034 0.239396267 0.710563685 0.264120961 0.615083478 0.59189028 0.443770864 0.506729588 1 20.70762734 -10.2165565 3.457385385 1.000938297 0.505270786 0.506554192 0.145680589 70322323.61 110804054.6 735029.9325 0.033410754 6.07E-11 10.2165565 -0.49566751 S(ph)PSVS(ph)PSKQPVSTSSK ddPTM_HeLa_A485_30min_R1 4 SPSVSPSKQPVSTSSK 16 1 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 2 0 S(0.993)PS(0.008)VS(0.862)PS(0.136)KQPVSTSSK;S(1)PS(0.03)VS(0.962)PS(0.008)KQPVSTSSK;S(0.995)PS(0.043)VS(0.84)PS(0.122)KQPVSTSSK;S(0.962)PS(0.048)VS(0.885)PS(0.106)KQPVSTSSK ;;; 160.13 9.08E-12 2100250000 3464040 2132570 1249730 5541000 2568570 2559320 4207320 3353000 2134030 6772500 TRUE FALSE FALSE 4234603.747 2381955.511 1712057.133 5843690.799 2312834.152 2693322.038 3308391.711 2530671.493 2562310.247 5084240.389 0.832888185 0.468497815 0.336738038 1.149373427 0.454902596 0.529739318 0.650715045 0.497748198 0.503971105 1 22.27760081 -10.65846941 4.066655339 1.016383344 0.598865753 0.224230205 0.221574794 0.03271744 0.002747712 0.213266883 0.050870654 2.20E-11 10.65846941 -0.41751759 S(ph)PSVS(ph)PSKQPVSTSSK ddPTM_HeLa_A486_30min_R1 2 SPSVSPSKQPVSTSSK 16 1 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 2 0 S(0.994)PS(0.03)VS(0.85)PS(0.126)KQPVSTSSK;S(0.912)PS(0.096)VS(0.714)PS(0.277)KQPVSTSSK ; 151.87 4.70E-08 846062000 1659970 1526040 488010 763610 951070 1791850 2166050 1678640 1190090 2828800 TRUE FALSE FALSE 1543614.675 1405111.033 676980.5414 1777722.671 831777.9322 1570789.765 1624081.38 1296450.316 1293247.959 2120450.068 0.727965586 0.662647546 0.319262666 0.838370447 0.392264805 0.740781304 0.765913522 0.61140337 0.609893144 1 21.01593908 -13.99999997 0.283293211 3.783744992 0.604494654 0.340250012 0.154535283 263.8832193 2.519649558 432.4271971 0.16865539 1.00E-14 13.99999997 -3.179250338 S(ph)PSWQRPNQGVPSTGR ddPTM_HeLa_A485_30min_R1 5 SPSWQRPNQGVPSTGR 16 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4;A0A0A0MSP3;Q96HC4-6 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 S(0.998)PS(0.002)WQRPNQGVPSTGR;S(0.996)PS(0.004)WQRPNQGVPSTGR;S(0.998)PS(0.002)WQRPNQGVPSTGR;S(0.989)PS(0.011)WQRPNQGVPSTGR;S(0.998)PS(0.002)WQRPNQGVPSTGR ;;;; 137.99 2.40E-06 8196510000 204005.6 201450 170698 164463 246909 195614 338190 293156 215515 283164 TRUE FALSE FALSE 249385.9419 225007.8251 233846.2935 173447.1972 222325.873 205856.0466 265932.9437 221259.0313 258766.8837 212576.426 1.173158974 1.058479669 1.100057508 0.815928654 1.045863256 0.968386055 1.250999223 1.040844629 1.217288711 1 17.69762209 -6.736802522 24.99732336 1.130687002 1.022997798 0.163010225 0.111019878 399.4439281 405288.0329 0.04202022 0.032534795 1.83E-07 6.736802522 -0.107689204 S(ph)PSWQRPNQGVPSTGR ddPTM_HeLa_A486_30min_R1 6 SPSWQRPNQGVPSTGR 16 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4;A0A0A0MSP3;Q96HC4-6 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 S(0.954)PS(0.046)WQRPNQGVPSTGR;S(0.971)PS(0.029)WQRPNQGVPSTGR;S(0.633)PS(0.367)WQRPNQGVPSTGR;S(0.995)PS(0.005)WQRPNQGVPSTGR;S(0.983)PS(0.017)WQRPNQGVPSTGR;S(0.99)PS(0.01)WQRPNQGVPSTGR ;;;;; 143.52 4.21E-08 8083700000 404524 402206 254057 99815.2 355607 382510 418992 437828 306364 389901 TRUE FALSE FALSE 376168.9566 370333.7318 352434.6743 232374.83 311003.4542 335319.8053 314155.77 338144.1221 332919.8782 292267.2518 1.287071864 1.267106491 1.2058644 0.795076522 1.064106404 1.147305431 1.074892134 1.156968905 1.139094018 1 18.15692866 -5.015229534 24.70141212 1.060636306 1.266938321 0.469081891 0.098876963 540.9150544 877336.3843 0.028086804 0.050880092 9.66E-06 5.015229534 0.206302015 S(ph)PSY(ph)GRS(ph)R ddPTM_HeLa_A485_30min_R1 3 SPSYGRSR 8 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 S(0.987)PS(0.206)Y(0.808)GRS(0.999)R;S(0.991)PS(0.136)Y(0.874)GRS(0.999)R;S(0.999)PS(0.02)Y(0.982)GRS(1)R ;; 93.623 0.0032859 5164550000 1828640 2576690 3198860 3632580 6714500 3620020 5124620 6375700 3393030 5076550 TRUE FALSE FALSE 2235414.659 2878011.481 4382251.43 3831018.647 6045980.804 3809558.65 4029703.073 4812049.578 4073979.998 3811059.512 0.586559893 0.755173587 1.14987746 1.005237162 1.586430436 0.999606182 1.057370807 1.262654011 1.068988817 1 21.86176071 -4.656438602 2.622549266 1.158528535 0.594190073 0.55713284 0.169930624 0.20139451 2.634780954 0.044903467 0.170412839 2.21E-05 4.656438602 -0.564338463 S(ph)PSY(ph)GRS(ph)R ddPTM_HeLa_A486_30min_R1 1 SPSYGRSR 8 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 S(0.848)PS(0.245)Y(0.908)GRS(0.999)R 70.563 0.016127 3525400000 1787800 2448100 3535100 1807600 5868300 3846000 4364600 5129300 2505700 2826900 TRUE FALSE FALSE 1662484.452 2254103.64 4903985.393 4208184.151 5132243.094 3371519.623 3272530.916 3961470.362 2722896.093 2119025.84 0.784551288 1.063745235 2.314264083 1.985905066 2.421982308 1.591070557 1.544356305 1.869477138 1.284975408 1 21.01496975 -7.948405296 4.186504803 1.00330141 1.72014936 0.185934925 0.479161421 0.323484049 11.71000334 0.496785635 0.130503746 1.13E-08 7.948405296 0.71684795 S(ph)PSYGR ddPTM_HeLa_A485_30min_R1 8 SPSYGR 6 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR ;;;;;;; 176.65 0.0017493 1.69E+11 7009700 9607050 6278390 7662110 5041610 7485800 8154940 8696160 8045730 10641320 TRUE FALSE FALSE 8568983.582 10730510.93 8601027.727 8080671.668 4539649.606 7877744.913 6412570.449 6563413.125 9660434.211 7988634.763 1.072646808 1.343222121 1.076658025 1.01152098 0.568263507 0.986119049 0.802711682 0.821593842 1.209272235 1 22.92951754 -5.232678707 2.767007915 0.885430489 1.201974087 0.323849504 0.170325373 0.283155457 4.312166297 0.0484148 0.088905152 5.85E-06 5.232678707 0.316543599 S(ph)PSYGR ddPTM_HeLa_A486_30min_R1 4 SPSYGR 6 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 S(1)PSYGR;S(1)PSYGR;S(1)PSYGR;S(1)PSYGR ;;; 161.6 0.0017493 67793400000 9890510 6796990 8878190 2429620 5731170 11406930 7865470 6176380 10541300 10779900 TRUE FALSE FALSE 9197236.324 6258371.758 12316062.93 5656278.146 5012313.218 9999658.954 5897446.214 4770153.103 11455028.37 8080542.875 1.13819535 0.774498924 1.52416281 0.699987394 0.620294118 1.237498409 0.729832922 0.590325821 1.417606286 1 22.94602079 S(ph)PSYTNDSTATFIIDGMHCK ddPTM_HeLa_A485_30min_R1 3 SPSYTNDSTATFIIDGMHCK 20 0 Q04656-5;Q04656;Q04656-2;Q04656-3 Q04656-5 ATP7A Copper-transporting ATPase 1 1 0 S(0.483)PS(0.483)Y(0.033)TNDSTATFIIDGMHCK;S(0.795)PS(0.101)Y(0.101)T(0.003)NDSTATFIIDGMHCK;S(0.874)PS(0.121)Y(0.004)TNDSTATFIIDGMHCK ;; 197.72 2.62E-26 647790000 422855 381364 289044 453064 324394 386116 537579 399149 275961 756030 TRUE FALSE FALSE 516917.6359 425961.2024 395973.4037 477813.7391 292096.1943 406332.4367 422720.855 301257.0819 331343.8414 567565.6347 0.910762746 0.750505627 0.697669802 0.841865169 0.514647428 0.715921493 0.744796424 0.530788095 0.58379828 1 19.11442771 -1.000012822 0.717658321 0.675464399 33.8435399 0.154068141 0.138695784 515.6809093 2.542350019 0.051138184 27523.70183 0.099997048 1.000012822 33.1680755 S(ph)PSYTNDSTATFIIDGMHCK ddPTM_HeLa_A486_30min_R1 4 SPSYTNDSTATFIIDGMHCK 20 0 Q04656-5;Q04656;Q04656-2;Q04656-3 Q04656-5 ATP7A Copper-transporting ATPase 1 1 0 S(0.862)PS(0.077)Y(0.056)T(0.005)NDS(0.001)TATFIIDGMHCK;S(0.798)PS(0.189)Y(0.013)TNDSTATFIIDGMHCK;S(0.547)PS(0.435)Y(0.011)T(0.003)NDS(0.002)T(0.002)ATFIIDGMHCK;S(0.833)PS(0.132)Y(0.027)T(0.007)NDSTATFIIDGMHCK ;;; 224.4 8.41E-37 610620000 624230 622270 446978 184472 639730 648500 614191 566219 670590 860800 TRUE FALSE FALSE 580474.7005 572959.0589 620059.8521 429460.1387 559489.0982 568494.6635 460513.9156 437303.2942 728717.2811 645250.0771 0.899611982 0.88796434 0.960960524 0.665571619 0.867088774 0.881045479 0.71369835 0.677726838 1.129356364 1 19.29949888 -7.773111671 24.99999676 1.064678288 0.821244421 0.489386453 0.100277414 217.5868496 466017.7462 0.096683503 0.025799998 1.69E-08 7.773111671 -0.243433867 S(ph)PT(ph)PDGSER ddPTM_HeLa_A485_30min_R1 2 SPTPDGSER 9 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 S(1)PT(0.997)PDGS(0.003)ER;S(1)PT(0.997)PDGS(0.003)ER ; 120.32 0.0011615 2762000000 1979280 1965210 1771690 2527900 2229800 1988390 2437700 2174200 1969300 2965300 TRUE FALSE FALSE 2419564.008 2195024.214 2427111.857 2665992.776 2007793.283 2092499.026 1916865.481 1640974.041 2364520.447 2226105.282 1.086904571 0.986037916 1.090295179 1.197604083 0.901930964 0.939982059 0.861084827 0.737150239 1.062178175 1 21.0860904 -5.787684221 24.77378305 0.902259696 1.082775573 0.444183754 0.093874406 178.8850835 168857.2986 0.029137299 0.033049394 1.63E-06 5.787684221 0.180515877 S(ph)PT(ph)PDGSER ddPTM_HeLa_A486_30min_R1 2 SPTPDGSER 9 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 0 S(1)PT(1)PDGSER;S(1)PT(0.999)PDGS(0.001)ER ; 141.08 0.00032826 2933500000 1588190 1567250 1189700 601450 1382890 1778970 1742140 1541690 1543490 1988810 TRUE FALSE FALSE 1476866.082 1443055.402 1650383.701 1400205.996 1209435.041 1559498.769 1306238.146 1190680.842 1677280.956 1490799.031 0.99065404 0.96797447 1.107046401 0.939231893 0.811266318 1.046082494 0.876200023 0.798686353 1.125088574 1 20.50765436 -5.486293297 24.45833675 0.929247193 1.017606498 0.106234659 0.100984744 888.4423889 593946.3516 0.027602838 0.040924804 3.26E-06 5.486293297 0.088359304 S(ph)PT(ph)SSPTPQR ddPTM_HeLa_A485_30min_R1 1 SPTSSPTPQR 10 0 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 S(1)PT(0.565)S(0.305)S(0.129)PTPQR 81.017 0.018178 21734000 33754 47104 46064 40927 55453 49189 55505 59947 42581 53653 TRUE FALSE FALSE 41262.46085 52612.40305 63104.99048 43162.73838 49931.90461 51764.45998 43645.90332 45244.90426 51126.61612 40278.29451 1.024434161 1.306222214 1.566724491 1.07161286 1.239672762 1.285170105 1.083608525 1.12330735 1.269334185 1 15.29771498 -8.658977823 0.298649039 0.953966597 1.277098101 0.163470776 0.149184259 7.132634048 1.211923505 0.691616959 0.205949206 2.19E-09 8.658977823 0.323131504 S(ph)PTAALNESLVECPK ddPTM_HeLa_A486_30min_R1 1 SPTAALNESLVECPK 15 0 Q53EZ4 Q53EZ4 CEP55 Centrosomal protein of 55 kDa 1 0 S(0.998)PT(0.002)AALNESLVECPK 272.24 3.95E-58 295400000 164990 182640 86855 55447 181890 193440 192630 174750 162220 206490 TRUE FALSE FALSE 153425.053 168166.9412 120487.5821 129083.4181 159075.6601 169575.3396 144431.9366 134963.2398 176281.3602 154783.56 0.991223183 1.086465134 0.778426224 0.833960778 1.02772969 1.095564281 0.933121945 0.871948156 1.138889429 1 17.23989272 -5.802692689 24.99694938 1.005119782 0.923936548 0.145242544 0.104757953 346.289024 209827.8636 0.034581973 0.039212621 1.58E-06 5.802692689 -0.081183234 S(ph)PTEDFR ddPTM_HeLa_A485_30min_R1 2 SPTEDFR 7 0 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(0.997)PT(0.003)EDFR;S(0.988)PT(0.012)EDFR ; 164.71 0.00039563 5217300000 5245100 6331800 5406500 5323500 5397800 5273100 5914500 5223700 5270200 6714000 TRUE FALSE FALSE 6411854.4 7072248.931 7406589.333 5614309.325 4860376.079 5549191.362 4650818.758 3942579.385 6327880.799 5040323.362 1.272111716 1.40313397 1.469467096 1.113878797 0.964298465 1.100959396 0.922722299 0.782207629 1.255451356 1 22.26508486 -5.430569322 3.966737397 0.996227469 1.381649565 0.650504383 0.123319509 0.137959236 3.913826854 0.035508903 0.053379902 3.71E-06 5.430569322 0.385422096 S(ph)PTEDFR ddPTM_HeLa_A486_30min_R1 4 SPTEDFR 7 0 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(0.982)PT(0.018)EDFR;S(0.989)PT(0.011)EDFR;S(0.987)PT(0.013)EDFR;S(0.985)PT(0.015)EDFR ;;; 110.41 0.0029827 7768140000 7156130 8479130 6211700 1812091 7521130 6319450 5819370 6237690 6692730 6681800 TRUE FALSE FALSE 6654522.241 7807212.858 8617036.595 4218639.426 6577759.744 5539820.51 4363302.075 4817504.155 7272861.225 5008633.789 1.32861026 1.558750986 1.720436542 0.842273483 1.313284225 1.106054214 0.871156139 0.961839966 1.452064881 1 22.2559857 -5.257308832 24.9979728 1.078848052 1.53821444 0.529220215 0.197879592 278.223854 1683797.436 0.054121216 0.089600194 5.53E-06 5.257308832 0.459366388 S(ph)PTFSEELPVLGDGQQLR ddPTM_HeLa_A485_30min_R1 3 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 S(0.929)PT(0.071)FSEELPVLGDGQQLR;S(0.463)PT(0.463)FS(0.074)EELPVLGDGQQLR;S(0.5)PT(0.5)FSEELPVLGDGQQLR ;; 278.85 3.48E-69 175448000 41915 50735 45511 41283 55870 41398 57841.2 63098.6 52198 70383 TRUE FALSE FALSE 51238.84714 56668.01691 62347.41277 43538.18576 50307.38663 43565.53527 45482.9551 47623.56942 62673.65981 52837.8134 0.969738221 1.072489819 1.179977156 0.823996736 0.952109548 0.824514348 0.860803129 0.901316053 1.186151655 1 15.68928314 -5.262757769 24.9997922 0.924392397 1.073910537 0.244593465 0.110334818 158.9991108 3015021.193 0.030965981 0.048951127 5.46E-06 5.262757769 0.14951814 S(ph)PTFSEELPVLGDGQQLR ddPTM_HeLa_A486_30min_R1 3 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 S(0.497)PT(0.497)FS(0.005)EELPVLGDGQQLR;S(0.5)PT(0.5)FSEELPVLGDGQQLR;S(0.5)PT(0.5)FS(0.001)EELPVLGDGQQLR ;; 156 1.32E-08 204047000 59265.3 68156.1 53793.6 22775.5 76663.4 61584.3 69751 64998.4 63097 71110.6 TRUE FALSE FALSE 55111.10852 62755.16242 74623.92256 53022.51501 67047.56151 53986.65521 52298.56205 50199.68323 68566.29876 53304.04291 1.033901098 1.177305866 1.399967404 0.994718451 1.257832574 1.012806014 0.981136874 0.941761272 1.286324545 1 15.70195734 -6.277378607 24.27676904 1.036811505 1.175731553 0.179873678 0.136465646 941.386707 1433805.264 0.047300303 0.041863348 5.28E-07 6.277378607 0.138920048 S(ph)PTGNTPPVIDSVSEK ddPTM_HeLa_A485_30min_R1 1 SPTGNTPPVIDSVSEK 16 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.904)PT(0.096)GNTPPVIDSVSEK 170.16 3.73E-12 77994000 114750 107620 65902 113830 102400 114890 117950 121710 88736 143680 TRUE FALSE FALSE 140275.7416 120205.2228 90281.89221 120048.2447 92204.69645 120905.4627 92749.01894 91860.43167 106544.5013 107863.2202 1.300496511 1.114422716 0.837003494 1.112967371 0.854829814 1.120914641 0.859876228 0.851638135 0.987774155 1 16.71884349 -4.484723985 3.653191137 0.952666191 1.284390959 0.540094332 0.100599539 0.168293788 4.448074476 0.024666696 0.108729133 3.28E-05 4.484723985 0.331724769 S(ph)PTGNTPPVIDSVSEK ddPTM_HeLa_A486_30min_R1 2 SPTGNTPPVIDSVSEK 16 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.962)PT(0.038)GNTPPVIDSVSEK;S(0.832)PT(0.167)GNTPPVIDSVSEK ; 227 4.73E-34 271350000 225603 272940 139337 80128 213981 230460 260155 233103 199733 318660 TRUE FALSE FALSE 209789.3947 251311.2404 193292.018 186542.0334 187141.5077 202028.1883 195061.4674 180030.5355 217046.0173 238865.4619 0.878274293 1.052103717 0.809208734 0.780950213 0.783459887 0.845782336 0.816616458 0.753690107 0.908653832 1 17.86583874 -4.781016081 24.99038712 0.824127963 0.965189021 0.284233721 0.079000996 214.0672648 273264.9686 0.019141481 0.039936501 1.66E-05 4.781016081 0.141061058 S(ph)PTGPSNSFLANMGGTVAHK ddPTM_HeLa_A485_30min_R1 9 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 S(0.562)PT(0.438)GPSNSFLANMGGTVAHK;S(0.984)PT(0.016)GPSNSFLANMGGTVAHK;S(0.985)PT(0.015)GPSNSFLANMGGTVAHK;S(0.979)PT(0.021)GPSNSFLANMGGTVAHK;S(0.966)PT(0.034)GPSNSFLANMGGTVAHK;S(0.975)PT(0.025)GPSNSFLANMGGTVAHK;S(0.642)PT(0.358)GPSNSFLANMGGTVAHK;S(0.872)PT(0.128)GPSNSFLANMGGTVAHK;S(0.703)PT(0.297)GPSNSFLANMGGTVAHK ;;;;;;;; 365.12 6.88E-142 31639010000 6994020 7320940 5948520 6939490 7515000 6842470 8267610 7919870 6611140 9273670 TRUE FALSE FALSE 8549815.62 8177060.249 8149125.087 7318576.767 6766780.213 7200731.149 6501167.583 5977509.465 7937935.157 6961914.738 1.228083931 1.174541855 1.170529286 1.051230451 0.971971141 1.034303266 0.933818903 0.85860136 1.140194251 1 22.73105271 -5.329572498 1.717404003 0.979802075 1.205964554 0.630526578 0.068891571 0.231060963 1.331977581 0.021764187 0.043059883 4.68E-06 5.329572498 0.226162479 S(ph)PTGPSNSFLANMGGTVAHK ddPTM_HeLa_A486_30min_R1 10 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 S(0.843)PT(0.157)GPSNSFLANMGGTVAHK;S(0.82)PT(0.18)GPSNSFLANMGGTVAHK;S(0.983)PT(0.017)GPSNSFLANMGGTVAHK;S(0.81)PT(0.19)GPSNSFLANMGGTVAHK;S(0.498)PT(0.411)GPS(0.045)NS(0.045)FLANMGGTVAHK;S(0.956)PT(0.044)GPSNSFLANMGGTVAHK;S(0.817)PT(0.183)GPSNSFLANMGGTVAHK;S(0.653)PT(0.347)GPSNSFLANMGGTVAHK;S(0.82)PT(0.179)GPSNSFLANMGGTVAHK;S(0.935)PT(0.065)GPSNSFLANMGGTVAHK ;;;;;;;;; 306.39 7.64E-88 54215860000 10456559 10638260 6154978 2321591 8454240 9711230 10124172 9483312 8755475 10683850 TRUE FALSE FALSE 9723608.212 9795245.534 8538350.318 5404781.175 7393830.387 8513157.179 7590997.083 7324168.877 9514406.623 8008544.42 1.214154246 1.223099357 1.06615508 0.674876843 0.923242727 1.063009298 0.947862269 0.914544328 1.188031947 1 22.93310862 -4.935196487 4.78864503 0.951756169 1.211923318 0.412247719 0.122744079 0.193040999 8.707878621 0.033538457 0.072455341 1.16E-05 4.935196487 0.26016715 S(ph)PTHLTVSSTNTLR ddPTM_HeLa_A485_30min_R1 1 SPTHLTVSSTNTLR 14 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(0.857)PT(0.143)HLTVSSTNTLR 61.167 0.019677 175110000 113100 197860 196220 77623 151140 151650 111970 122190 142170 91211 TRUE FALSE FALSE 138258.7048 220998.0058 268809.9434 81863.34794 136091.9709 159590.1595 88046.69479 92222.71091 170702.2149 68473.77631 2.019148238 3.22748383 3.92573563 1.195543058 1.987504973 2.330675597 1.285845466 1.346832552 2.492957511 1 16.06326396 -5.270345097 24.99039124 1.702872328 3.074458714 0.503676999 0.633501845 517.2727989 1451521.935 0.177577947 0.267785623 5.37E-06 5.270345097 1.371586386 S(ph)PTHLTVSSTNTLR ddPTM_HeLa_A486_30min_R1 3 SPTHLTVSSTNTLR 14 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(0.855)PT(0.145)HLTVSSTNTLR;S(0.713)PT(0.287)HLTVSSTNTLR;S(0.87)PT(0.13)HLTVSSTNTLR ;; 79.514 0.0017681 357360000 344145 425920 413020 48584 402160 265519 282153 283142 300126 241996 TRUE FALSE FALSE 320022.2127 392168.548 572952.4051 113106.0073 351717.3428 232761.9654 211555.3351 218676.7475 326141.1633 181398.6265 1.764193141 2.161915752 3.1585267 0.623521851 1.938919548 1.283151752 1.166245518 1.205503877 1.797925209 1 17.46880401 -5.265606674 24.99962346 1.318317682 2.341582243 0.515340407 0.476380559 288.6166282 1731414.674 0.130078079 0.200983786 5.42E-06 5.265606674 1.02326456 S(ph)PTKAPHLQLIEGK ddPTM_HeLa_A485_30min_R1 2 SPTKAPHLQLIEGK 14 1 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(0.974)PT(0.026)KAPHLQLIEGK;S(0.992)PT(0.008)KAPHLQLIEGK ; 208.34 2.39E-22 2366480000 3454100 2425450 1607450 3965400 2732120 3302600 4593500 3955600 2455300 5951500 TRUE FALSE FALSE 4222452.628 2709085.279 2202112.647 4182019.761 2460100.54 3475519.029 3612061.2 2985482.898 2948056.189 4467900.579 0.945064142 0.606344128 0.492874138 0.936014508 0.55061667 0.777886385 0.808447085 0.668207102 0.659830302 1 22.09116565 -11.04512684 2.438575028 1.372325639 0.711065982 0.257821034 0.144251633 25512631.71 8810206.805 52993477.28 0.034947079 9.01E-12 11.04512684 -0.661259657 S(ph)PTKAPHLQLIEGK ddPTM_HeLa_A486_30min_R1 4 SPTKAPHLQLIEGK 14 1 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(0.98)PT(0.02)KAPHLQLIEGK;S(0.984)PT(0.016)KAPHLQLIEGK;S(0.999)PT(0.001)KAPHLQLIEGK;S(0.775)PT(0.225)KAPHLQLIEGK ;;; 219.79 6.63E-28 3435670000 4518580 3903600 1854983 2078240 3390500 4610710 5490840 5138240 3444680 6696960 TRUE FALSE FALSE 4201850.876 3594264.519 2573282.096 4838247.748 2965231.875 4041887.478 4116973.756 3968374.919 3743267.636 5019997.626 0.837022483 0.715989287 0.512606238 0.963794828 0.59068392 0.805157249 0.820114682 0.790513306 0.745671196 1 22.25925525 -14 0.197111187 2.127780129 0.709166984 0.280847827 0.120039168 176.8155643 1.744190528 78.19794512 0.28869593 1.00E-14 14 -1.418613145 S(ph)PTKAPHLQLIEGKK ddPTM_HeLa_A485_30min_R1 1 SPTKAPHLQLIEGKK 15 2 O43491;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(0.98)PT(0.02)KAPHLQLIEGKK 149.94 2.48E-08 871750000 433670 416230 156960 381570 398140 612790 770960 989350 253430 571110 TRUE FALSE FALSE 530138.3954 464904.4778 215026.0357 402414.2029 358499.7836 644874.7368 606238.0978 746710.3613 304291.0764 428742.7875 1.236495192 1.084343554 0.501526887 0.93859119 0.836165165 1.504106321 1.413990195 1.741627808 0.709728735 1 18.70975288 -6.252602313 24.90482998 1.328998576 0.906434851 0.22781113 0.317867597 800.7498583 2256693.381 0.104900536 0.103370214 5.59E-07 6.252602313 -0.422563725 S(ph)PTKSSLDYR ddPTM_HeLa_A485_30min_R1 4 SPTKSSLDYR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 S(0.991)PT(0.009)KSSLDYR;S(0.976)PT(0.024)KSSLDYR;S(0.981)PT(0.018)KS(0.001)S(0.001)LDYR;S(0.978)PT(0.021)KSSLDYR ;;; 106.49 0.00044501 2494160000 1868560 7107900 2453810 871290 5070900 9552100 11494000 31651400 2483830 1844300 TRUE FALSE FALSE 2284214.726 7939107.074 3361576.431 918886.3665 4566023.391 10052233.19 9038213.003 23888844.52 2982311.898 1384549.952 1.649788599 5.734070529 2.427919936 0.663671517 3.297839406 7.260289289 6.527906769 17.25386974 2.153993718 1 20.40098567 -6.283975818 3.313107159 7.956396984 2.722893853 0.163828293 4.302340293 0.364309614 8.342201702 1.526579173 1.397936011 5.20E-07 6.283975818 -5.233503131 S(ph)PTKSSLDYR ddPTM_HeLa_A486_30min_R1 1 SPTKSSLDYR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 S(0.972)PT(0.018)KS(0.004)S(0.006)LDYR 58.674 0.006485 0 820430 340570 289470 290040 784300 335280 700650 759160 194810 827350 TRUE FALSE FALSE 762922.0937 313581.9929 401560.5363 675227.7778 685925.7807 293916.5625 525339.9593 586315.8403 211696.2877 620176.1749 1.23016995 0.505633731 0.647494297 1.088767684 1.106017626 0.473924305 0.847081814 0.945402071 0.34134863 1 19.24231858 -6.254102516 24.9867686 0.725984646 0.887563624 0.106201081 0.275401583 1712.112422 5830857.025 0.092641275 0.090810759 5.57E-07 6.254102516 0.161578978 S(ph)PTKTDPKNEEEEK ddPTM_HeLa_A485_30min_R1 3 SPTKTDPKNEEEEK 14 2 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 S(0.989)PT(0.011)KTDPKNEEEEK;S(0.988)PT(0.012)KTDPKNEEEEK;S(0.988)PT(0.012)KTDPKNEEEEK ;; 153.11 1.80E-08 2921170000 3596470 1899140 902770 9960500 3311250 3352600 8064600 6048100 2185920 13144600 TRUE FALSE FALSE 4396492.344 2121227.903 1236742.19 10504616.89 2981570.323 3528136.952 6341532.328 4564793.992 2624614.094 9867893.128 0.445535059 0.214962594 0.125329913 1.064524793 0.302148623 0.357537005 0.642642988 0.462590538 0.265975124 1 23.23431066 -10.7825991 2.481025706 1.16293138 0.435690477 0.313585273 0.252363165 25294936.14 17144274.7 24948219.28 0.065246114 1.65E-11 10.7825991 -0.727240903 S(ph)PTKTDPKNEEEEK ddPTM_HeLa_A486_30min_R1 6 SPTKTDPKNEEEEK 14 2 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 S(0.984)PT(0.016)KTDPKNEEEEK;S(0.87)PT(0.129)KT(0.001)DPKNEEEEK;S(0.842)PT(0.139)KT(0.019)DPKNEEEEK;S(0.983)PT(0.017)KTDPKNEEEEK;S(0.996)PT(0.003)KT(0.001)DPKNEEEEK;S(0.97)PT(0.028)KT(0.002)DPKNEEEEK ;;;;; 145.91 3.70E-08 5139300000 3142580 2363270 601223 4626290 1847260 4389030 7546020 6190080 1776560 9812240 TRUE FALSE FALSE 2922301.37 2175995.878 834032.6469 10770236.92 1615559.426 3847556.103 5657925.982 4780733.912 1930553.651 7355191.237 0.397311406 0.295844908 0.113393741 1.464304132 0.219648868 0.523107555 0.769242539 0.649980913 0.262474977 1 22.81033142 -14 0.064616076 2.293901358 8.11E-12 0.118235024 0.371331264 860.8222802 4.02867526 181.3096072 26.3603574 1.00E-14 14 -2.293901358 S(ph)PTKTDPKNEEEEKR ddPTM_HeLa_A486_30min_R1 2 SPTKTDPKNEEEEKR 15 3 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 S(0.978)PT(0.021)KT(0.001)DPKNEEEEKR;S(0.524)PT(0.433)KT(0.043)DPKNEEEEKR ; 97.32 0.0044001 812190000 280580 243229 83197 468990 279840 463100 783150 711650 194949 894710 TRUE FALSE FALSE 260912.7909 223954.6482 115413.1065 1091832.421 244739.8578 405967.4305 587197.5867 549622.8302 211847.3363 670668.7924 0.389033743 0.333927343 0.172086591 1.627975588 0.364919108 0.605317312 0.875540346 0.819514545 0.315874749 1 19.35524095 S(ph)PTLGIAR ddPTM_HeLa_A485_30min_R1 2 SPTLGIAR 8 0 Q99618;J3KMY0;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 S(0.967)PT(0.033)LGIAR;S(0.995)PT(0.005)LGIAR ; 89.886 0.0039796 536460000 97823 108000 105374 108247 129977 104145 129701 127699 96510 153044 TRUE FALSE FALSE 119583.3889 120629.6605 144356.2276 114160.2595 117036.0335 109597.8712 101989.3218 96380.62003 115878.6718 114892.9474 1.040824451 1.049930943 1.256441156 0.993622865 1.018652895 0.953912957 0.887690012 0.838873249 1.008579503 1 16.80993072 -5.87357203 1.643969092 0.924270574 1.10482151 0.459539605 0.077400836 0.312095669 1.740410897 0.029273934 0.035859459 1.34E-06 5.87357203 0.180550936 S(ph)PTLLR ddPTM_HeLa_A485_30min_R1 5 SPTLLR 6 0 P55197-1;P55197;H0Y5P4;Q5JT35 P55197-1 MLLT10 Protein AF-10 1 0 S(0.998)PT(0.002)LLR;S(0.998)PT(0.002)LLR;S(0.999)PT(0.001)LLR;S(0.998)PT(0.002)LLR;S(0.998)PT(0.002)LLR ;;;; 121.99 0.0059511 1304922000 387589 469284 440581 391866 486104 441426 514434 460041 403558 501103 TRUE FALSE FALSE 473806.8359 524162.6816 603570.246 413272.6473 437705.7789 464538.3828 404520.9734 347215.2234 484548.3889 376187.2442 1.259497347 1.393355808 1.60444102 1.098582298 1.163531687 1.234859475 1.075318155 0.922985106 1.288051087 1 18.52109141 -5.284239627 24.64333824 1.114444881 1.416523833 0.554613411 0.126131784 477.4564221 516051.2954 0.035711156 0.053013506 5.20E-06 5.284239627 0.302078952 S(ph)PTLLR ddPTM_HeLa_A486_30min_R1 4 SPTLLR 6 0 P55197-1;P55197;H0Y5P4;Q5JT35 P55197-1 MLLT10 Protein AF-10 1 0 S(0.998)PT(0.002)LLR;S(0.994)PT(0.006)LLR;S(0.998)PT(0.002)LLR;S(0.998)PT(0.002)LLR ;;; 126.28 0.0055647 862680000 348161 348944 264806 112253.5 352619 340160 331048 334433 278423 368487 TRUE FALSE FALSE 323756.7118 321292.4066 367345.975 261331.821 308390.237 298194.5177 248216.2889 258289.9065 302556.9298 276215.4568 1.172116563 1.163194886 1.329925484 0.946115848 1.116484358 1.079572162 0.898632871 0.935103015 1.095365673 1 18.07543453 -5.270055706 24.99890464 1.010150589 1.215890571 0.59709108 0.079596884 445.2102234 1291706.692 0.023245649 0.035093815 5.37E-06 5.270055706 0.205739982 S(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_HeLa_A485_30min_R1 10 SPTMEQAVQTASAHLPAPAAVGR 23 0 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.843)PT(0.157)MEQAVQTASAHLPAPAAVGR;S(0.867)PT(0.133)MEQAVQTASAHLPAPAAVGR;S(0.979)PT(0.021)MEQAVQTASAHLPAPAAVGR;S(0.96)PT(0.04)MEQAVQTASAHLPAPAAVGR;S(0.991)PT(0.009)MEQAVQTASAHLPAPAAVGR;S(0.944)PT(0.056)MEQAVQTASAHLPAPAAVGR;S(0.968)PT(0.032)MEQAVQTASAHLPAPAAVGR;S(0.901)PT(0.099)MEQAVQTASAHLPAPAAVGR;S(0.51)PT(0.488)MEQAVQT(0.002)ASAHLPAPAAVGR;S(0.885)PT(0.115)MEQAVQTASAHLPAPAAVGR ;;;;;;;;; 256.97 3.25E-61 10704640000 2035802 1916860 1913914 3112449 2385566 2370812 3079018 2664420 2079056 4139945 TRUE FALSE FALSE 2488659.131 2141020.103 2621950.433 3282474.208 2148050.673 2494944.05 2421160.651 2010966.817 2496303.469 3107932.902 0.800744164 0.688888779 0.843631609 1.056159934 0.691150916 0.802766382 0.779026037 0.647043189 0.803203785 1 21.56752393 S(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_HeLa_A486_30min_R1 10 SPTMEQAVQTASAHLPAPAAVGR 23 0 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.997)PT(0.003)MEQAVQTASAHLPAPAAVGR;S(0.973)PT(0.027)MEQAVQTASAHLPAPAAVGR;S(0.965)PT(0.035)MEQAVQTASAHLPAPAAVGR;S(0.982)PT(0.018)MEQAVQTASAHLPAPAAVGR;S(0.994)PT(0.006)MEQAVQTASAHLPAPAAVGR;S(0.824)PT(0.176)MEQAVQTASAHLPAPAAVGR;S(0.834)PT(0.165)MEQAVQT(0.001)ASAHLPAPAAVGR;S(0.874)PT(0.126)MEQAVQTASAHLPAPAAVGR;S(0.872)PT(0.128)MEQAVQTASAHLPAPAAVGR;S(0.952)PT(0.048)MEQAVQTASAHLPAPAAVGR ;;;;;;;;; 273.63 7.38E-75 11730680000 2334273 2457609 1653919 1061654 1991399 2497027 2799995 2752452 2089901 4132896 TRUE FALSE FALSE 2170652.517 2262859.112 2294360.73 2471584.165 1741619.168 2188969.197 2099406.636 2125778.765 2271055.301 3097991.941 0.700664352 0.730427695 0.740596094 0.797802 0.562176791 0.706576789 0.677666913 0.686179566 0.733073341 1 21.56290196 -8.234391821 3.901563978 0.999996826 0.700955231 0.714606686 0.056468118 1.527929998 24.90767313 0.05560382 0.0146117 5.83E-09 8.234391821 -0.299041596 S(ph)PTMEQAVQTASAHLPAPAAVGRR ddPTM_HeLa_A485_30min_R1 1 SPTMEQAVQTASAHLPAPAAVGRR 24 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.962)PT(0.038)MEQAVQTASAHLPAPAAVGRR 103.02 0.00051909 236300000 16934 59253 30991 19239 40167 56291 42029 80793 17205 26497 TRUE FALSE FALSE 20700.90988 66182.12292 42455.86054 20289.97785 36167.83245 59238.30972 33049.1608 60978.39007 20657.88569 19891.78554 1.040676305 3.327108207 2.134341357 1.020017927 1.818229559 2.978028774 1.661447673 3.065506108 1.038513393 1 14.27988516 -9.381269886 13.73425521 0.999999297 2.066361396 0.114673382 0.827791759 0 0 0.766651011 0.185940182 4.16E-10 9.381269886 1.066362098 S(ph)PTNSLLK ddPTM_HeLa_A485_30min_R1 2 SPTNSLLK 8 0 Q14106-2;Q14106 Q14106-2 TOB2 Protein Tob2 1 0 S(1)PTNSLLK;S(0.992)PT(0.008)NSLLK ; 118.23 0.00085495 538400000 494140 529430 443310 608390 643230 634710 795880 868250 518870 818710 TRUE FALSE FALSE 604059.7382 591342.2331 607308.8167 641624.8052 579187.7627 667942.4342 625833.7363 655310.3261 623002.4496 614620.6642 0.982817164 0.962125531 0.988103479 1.043936272 0.942349967 1.086755576 1.01824389 1.066202886 1.013637331 1 19.22933675 -6.259536155 24.99993081 1.039935363 0.986231253 0.377808028 0.033897996 183.7593819 2413779.471 0.011020058 0.010504158 5.50E-07 6.259536155 -0.05370411 S(ph)PTNSLLK ddPTM_HeLa_A486_30min_R1 3 SPTNSLLK 8 0 Q14106-2;Q14106 Q14106-2 TOB2 Protein Tob2 1 0 S(0.559)PT(0.44)NS(0.001)LLK;S(0.993)PT(0.007)NSLLK;S(0.973)PT(0.026)NS(0.002)LLK ;; 121.58 0.00070347 674390000 875450 831710 552850 342130 915480 866780 1068500 1008180 705640 1114420 TRUE FALSE FALSE 814085.4758 765802.2706 766928.3258 796495.9303 800651.9619 759845.4964 801149.9986 778639.4224 766805.4434 835361.9783 0.9745302 0.916731058 0.918079043 0.953474004 0.958449131 0.909600288 0.959045323 0.932098231 0.917931942 1 19.67204195 -10.49413586 3.298330122 1.001344965 0.937273375 0.434664304 0.021283899 29053580.85 37092753.43 353573.9757 0.005156827 3.21E-11 10.49413586 -0.06407159 S(ph)PTPESSTIASYVTLR ddPTM_HeLa_A485_30min_R1 3 SPTPESSTIASYVTLR 16 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(0.988)PT(0.012)PESSTIASYVTLR;S(1)PTPESSTIASYVTLR;S(0.995)PT(0.005)PESSTIASYVTLR ;; 126.48 2.12E-05 1218260000 121832 128931 129200 186108 179995 103627 119322 108431 160935 239395 TRUE FALSE FALSE 148933.1081 144008.3589 176996.4565 196274.6088 162074.0658 109052.7495 93827.87993 81838.12724 193233.1783 179718.2322 0.828703389 0.801300776 0.984855316 1.092124079 0.901823169 0.606798476 0.522083256 0.455369086 1.075200751 1 17.45537725 -6.192369551 6.635138172 0.685082817 0.929634279 0.167477629 0.198350662 0.356083128 28.44796007 0.066239707 0.066129646 6.42E-07 6.192369551 0.244551462 S(ph)PTPESSTIASYVTLR ddPTM_HeLa_A486_30min_R1 5 SPTPESSTIASYVTLR 16 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(0.993)PT(0.007)PESSTIASYVTLR;S(0.989)PT(0.011)PESSTIASYVTLR;S(0.982)PT(0.018)PESSTIASYVTLR;S(0.962)PT(0.038)PESSTIASYVTLR;S(0.971)PT(0.029)PESSTIASYVTLR ;;;; 162.79 7.05E-12 2584949000 135250 186077 136152 58905.6 187518 183808 173615 171392 188511 167530 TRUE FALSE FALSE 125769.6734 171331.5808 188873.7007 137135.2137 163997.7439 161131.6378 130174.6907 132369.7831 204851.2853 125579.3976 1.001515184 1.364328737 1.50401821 1.09202 1.305928736 1.283105676 1.036592731 1.054072448 1.631249148 1 16.93824027 S(ph)PTPKS(ph)PPSR ddPTM_HeLa_A485_30min_R1 1 SPTPKSPPSR 10 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.982)PT(0.233)PKS(0.781)PPS(0.003)R 98.368 0.0010869 0 147580 166780 150030 182950 190600 173140 192940 187950 153040 231810 TRUE FALSE FALSE 180408.6619 186283.4702 205532.3403 192944.0952 171623.1948 182205.3427 151716.7928 141854.9678 183753.7242 174024.0331 1.036688201 1.070446805 1.181057217 1.108720972 0.986203984 1.047012527 0.871815174 0.815145846 1.055910042 1 17.40892703 -6.212441009 1.566479425 0.927879864 1.099622027 0.418385452 0.077791422 0.347996408 1.702765427 0.034116245 0.032157276 6.13E-07 6.212441009 0.171742162 S(ph)PTPKSPPS(ph)R ddPTM_HeLa_A486_30min_R1 1 SPTPKSPPSR 10 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.986)PT(0.059)PKS(0.37)PPS(0.586)R 79.639 0.032349 125200000 193850 188770 110830 109570 207810 233270 266960 255350 179160 339920 TRUE FALSE FALSE 180262.116 173811.1777 153746.3441 255084.4974 181744.532 204491.5191 200163.7844 197212.3793 194689.7331 254801.8195 0.707460082 0.682142608 0.603395786 1.001109403 0.713277999 0.802551251 0.785566543 0.773983403 0.764082978 1 17.95901605 -14 0.125973284 1.750911461 0.659224873 0.380990938 0.09587148 166.426492 1.335579018 32.01743107 0.815506696 1.00E-14 14 -1.091686589 S(ph)PTPPLFSLPEAR ddPTM_HeLa_A485_30min_R1 1 SPTPPLFSLPEAR 13 0 A0A087WWS1;Q96FV9;J3KRD7;J3QQZ3;J3KT14;Q96FV9-2 A0A087WWS1 THOC1 THO complex subunit 1 1 0 S(0.976)PT(0.024)PPLFSLPEAR 87.989 0.0017882 32218000 13570 16777 14284 12739 23631 16678 15724 14618 15828 16282 TRUE FALSE FALSE 16588.59968 18738.92421 19568.24601 13434.89931 21278.21467 17551.23429 12364.43895 11032.91258 19004.53442 12223.19705 1.357140822 1.533062433 1.600910623 1.09913137 1.740805992 1.435895554 1.011555234 0.902620856 1.554792444 1 13.57733406 -6.71691385 8.061822471 1.10940362 1.468053961 0.358067582 0.22543977 0.261522068 41.59564484 0.084351104 0.064754524 1.92E-07 6.71691385 0.358650341 S(ph)PTPPLFSLPEAR ddPTM_HeLa_A486_30min_R1 1 SPTPPLFSLPEAR 13 0 A0A087WWS1;Q96FV9;J3KRD7;J3QQZ3;J3KT14;Q96FV9-2 A0A087WWS1 THOC1 THO complex subunit 1 1 0 S(0.996)PT(0.004)PPLFSLPEAR 137.62 7.29E-06 79889000 24330 23547 15996 5689.8 20152 18894 22480 20182 16051 22719 TRUE FALSE FALSE 22624.59264 21681.04996 22190.07959 13246.14195 17624.34825 16563.05038 16855.26623 15586.99917 17442.3136 17030.01452 1.328512821 1.273108131 1.302998277 0.777811547 1.034899191 0.972579933 0.989738805 0.915266346 1.024210143 1 14.05579204 -5.240831691 24.76962243 0.960666761 1.298696654 0.833526496 0.070101319 262.6018406 315636.4006 0.018041925 0.031201709 5.74E-06 5.240831691 0.338029893 S(ph)PTPRPR ddPTM_HeLa_A485_30min_R1 1 SPTPRPR 7 1 Q9HBI1 Q9HBI1 PARVB Beta-parvin 1 0 S(0.99)PT(0.01)PRPR 71.501 0.0096451 562680000 75675 115700 63147 73726 64837 82054 99837 88276 71888 108940 TRUE FALSE FALSE 92508.64267 129230.1085 86507.70307 77753.4647 58381.60062 86350.22056 78506.00936 66626.17259 86315.2622 81783.26289 1.131143946 1.580153493 1.057767812 0.950725881 0.713857562 1.055842204 0.959927577 0.814667577 1.055414753 1 16.319518 -4.944027281 6.126704313 0.930254776 1.354014229 0.579340271 0.141110279 0.121633201 9.500181636 0.035309944 0.07455389 1.14E-05 4.944027281 0.423759453 S(ph)PTPRPR ddPTM_HeLa_A486_30min_R1 1 SPTPRPR 7 1 Q9HBI1 Q9HBI1 PARVB Beta-parvin 1 0 S(0.991)PT(0.009)PRPR 79.474 0.006388 154710000 31532 24724 30241 10306 30985 35314 31695 26656 38267 39531 TRUE FALSE FALSE 29321.76963 22764.7802 41951.12508 23992.88884 27098.57238 30957.31773 23764.57576 20587.0107 41584.01437 29632.1803 0.989524542 0.768245197 1.415728599 0.809690296 0.914498093 1.044719539 0.801985393 0.694751803 1.403339679 1 14.85487716 -3.858747214 19.34776741 0.970530032 11.29542023 0 0.237967981 15367.16861 2139038.195 0.055066523 114479.0271 0.000138437 3.858747214 10.3248902 S(ph)PTS(ph)SPTPQR ddPTM_HeLa_A485_30min_R1 1 SPTSSPTPQR 10 0 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 S(0.999)PT(0.112)S(0.705)S(0.184)PTPQR 131.83 0.00014702 140110000 59672 64773 59148 61786 70555 70960 81425 89823 51862 76326 TRUE FALSE FALSE 72945.83053 72347.6389 81029.30655 65161.21273 63530.29647 74675.35587 64027.88357 67793.76841 62270.22769 57299.33288 1.273065966 1.262626199 1.414140488 1.13720718 1.108744086 1.303250005 1.117428081 1.183151095 1.086753101 1 15.80623072 -6.343373192 0.128069897 0.86852478 1.523004394 0.531508025 0.08002197 10.75037028 0.636164114 1.072451361 1.953818818 4.54E-07 6.343373192 0.654479615 S(ph)PTS(ph)SPTPQR ddPTM_HeLa_A486_30min_R1 2 SPTSSPTPQR 10 0 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 S(0.998)PT(0.046)S(0.727)S(0.23)PTPQR;S(1)PT(0.089)S(0.644)S(0.265)PT(0.002)PQR ; 115.33 0.0010283 120085000 216203 240990 190462 87664 266160 226440 233810 247410 207979 263810 TRUE FALSE FALSE 201048.2862 221893.0747 264213.9871 204086.2223 232775.731 198504.1351 175308.265 191080.1439 226006.7872 197750.2589 1.016677739 1.122087404 1.336099324 1.032040228 1.177119728 1.003812264 0.886513454 0.966270006 1.142889969 1 17.59332006 -6.304802235 7.393392866 0.990165825 1.141194009 0.312351104 0.100975669 0.317486072 47.18846345 0.036242779 0.032140733 4.96E-07 6.304802235 0.151028184 S(ph)PTSS(ph)PTPQR ddPTM_HeLa_A485_30min_R1 2 SPTSSPTPQR 10 0 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 S(0.999)PT(0.384)S(0.16)S(0.456)PT(0.001)PQR;S(1)PT(0.001)S(0.108)S(0.891)PTPQR ; 167.2 7.89E-07 3050800000 1366050 1810350 1578210 1486030 2070590 1795590 2155280 2205250 1478160 2132930 TRUE FALSE FALSE 1669923.11 2022054.685 2162055.554 1567208.056 1864434.789 1889604.316 1694786.821 1664408.98 1774813.154 1601229.805 1.042900341 1.262813544 1.350246884 0.978752738 1.164376771 1.180095643 1.058428226 1.039456657 1.108406269 1 20.61074894 -6.771970405 0.490806525 1.014901471 1.199184973 0.215785357 0.100843704 1.49783683 0.786491675 0.10178573 0.092955272 1.69E-07 6.771970405 0.184283502 S(ph)PTSS(ph)PTPQR ddPTM_HeLa_A486_30min_R1 3 SPTSSPTPQR 10 0 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 2 0 S(0.976)PT(0.028)S(0.147)S(0.849)PTPQR;S(0.98)PT(0.021)S(0.351)S(0.647)PTPQR;S(1)PT(0.233)S(0.12)S(0.647)PTPQR ;; 123.26 0.000266 7554572000 7184556 8037288 5817914 2427752 8300889 7103845 7908826 7525239 6062898 8438606 TRUE FALSE FALSE 6680955.725 7400384.028 8070766.11 5651929.348 7259714.099 6227444.831 5929954.084 5811906.355 6588434.88 6325524.131 1.056190062 1.169924242 1.275904722 0.893511625 1.14768578 0.984494676 0.937464463 0.918802337 1.041563473 1 22.5927536 -5.263762321 24.99996977 0.989958931 1.167598131 0.491851553 0.083030108 174.8102252 1881348.747 0.023358772 0.036603383 5.45E-06 5.263762321 0.1776392 S(ph)PTSSPTPQRR ddPTM_HeLa_A485_30min_R1 1 SPTSSPTPQRR 11 1 A0A0D9SFE4;A0A0D9SFB1;A0A0U1RQP1;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFE4 DNM1 Dynamin-1 1 0 S(0.761)PT(0.194)S(0.04)S(0.004)PTPQRR 61.03 0.016385 88784000 30341 33528 26939 24122 42491 29105 44154 63339 25844 45448 TRUE FALSE FALSE 37090.25077 37448.80795 36904.85713 25439.72378 38260.44685 30628.8928 34720.13719 47805.01094 31030.65374 34118.65001 1.087096083 1.097605208 1.081662291 0.745625157 1.121393925 0.89771702 1.017629279 1.401140166 0.909492425 1 15.05827294 -7.035357692 24.99922037 1.13506671 1.002288727 0.061774953 0.159215897 1276.506416 902533.1155 0.071909772 0.04154065 9.22E-08 7.035357692 -0.132777983 S(ph)PTTTQSPK ddPTM_HeLa_A485_30min_R1 2 SPTTTQSPK 9 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.915)PT(0.067)T(0.014)T(0.003)QSPK;S(0.986)PT(0.01)T(0.003)T(0.001)QSPK ; 76.143 0.010807 189239000 210344 222953 168524 264020 209009 223450 258100 274050 216177 358240 TRUE FALSE FALSE 257134.2971 249025.4139 230868.0405 278442.7441 188199.3301 235149.4965 202954.8265 206838.8078 259561.741 268937.3609 0.95611222 0.925960651 0.8584454 1.035344227 0.699788715 0.874365301 0.754654637 0.769096592 0.965138277 1 18.03691066 -5.751169046 24.99997646 0.829362343 0.936570933 0.197205413 0.095882411 312.9949073 761886.5252 0.027126821 0.034628708 1.77E-06 5.751169046 0.10720859 S(ph)PTVEPSTLPR ddPTM_HeLa_A485_30min_R1 2 SPTVEPSTLPR 11 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 S(0.999)PT(0.001)VEPSTLPR;S(0.996)PT(0.004)VEPSTLPR ; 163.12 6.54E-08 1095980000 242155 326730 289650 229580 377700 310220 375520 438460 285030 299820 TRUE FALSE FALSE 296021.5443 364938.2313 396803.5883 242121.3741 340094.8618 326462.6395 295287.0843 330926.9975 342232.9065 225080.3918 1.315181398 1.621368385 1.76294161 1.075710648 1.510992846 1.450426832 1.311918297 1.470261336 1.520491873 1 17.78008085 -10.46130385 2.907590319 0.987792628 1.450632344 0.36617026 0.1771304 24597543.07 28628160.34 2448484.929 0.047181862 3.46E-11 10.46130385 0.462839716 S(ph)PTVLCQK ddPTM_HeLa_A486_30min_R1 2 SPTVLCQK 8 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 S(0.998)PT(0.002)VLCQK;S(0.996)PT(0.004)VLCQK ; 86.18 0.0046171 246410000 508610 534080 289080 169296 433830 524030 531910 493050 428310 581190 TRUE FALSE FALSE 472959.0655 491757.5557 401019.5178 394129.6437 379414.9961 459380.5065 398820.492 380793.2782 465436.2557 435656.2411 1.085624446 1.12877427 0.92049529 0.904680357 0.870904535 1.054456388 0.915447673 0.874068227 1.068356681 1 18.73283069 -4.760929856 24.99971157 0.944456585 1.107199403 0.463076242 0.066954809 10.35197217 507784.5658 0.016981357 0.039740568 1.73E-05 4.760929856 0.162742818 S(ph)PVDESGDEVQYGDVPVENGMAPFFEMK ddPTM_HeLa_A485_30min_R1 2 SPVDESGDEVQYGDVPVENGMAPFFEMK 28 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;D6R9F5;F8WA26 Q8WX93-3 PALLD Palladin 1 0 S(0.497)PVDES(0.497)GDEVQY(0.007)GDVPVENGMAPFFEMK;S(0.547)PVDES(0.453)GDEVQYGDVPVENGMAPFFEMK ; 96.982 0.001133 44261000 27558 27721 23605 30578 35879 32076 41471 47869 30330 44279 TRUE FALSE FALSE 33688.18203 30962.72981 32337.47179 32248.39871 32306.76078 33755.44976 32610.38206 36129.05269 36416.9528 33241.06019 1.01345089 0.931460357 0.9728171 0.97013749 0.971893213 1.015474523 0.981027135 1.086880276 1.095541255 1 15.02067878 -7.252701679 24.01288804 1.068408075 0.97809864 0.561222094 0.032737322 232.1186024 637909.6226 0.015304944 0.008655617 5.59E-08 7.252701679 -0.090309435 S(ph)PVDESGDEVQYGDVPVENGMAPFFEMK ddPTM_HeLa_A486_30min_R1 3 SPVDESGDEVQYGDVPVENGMAPFFEMK 28 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;D6R9F5;F8WA26 Q8WX93-3 PALLD Palladin 1 0 S(0.835)PVDES(0.164)GDEVQY(0.001)GDVPVENGMAPFFEMK;S(0.523)PVDES(0.474)GDEVQY(0.003)GDVPVENGMAPFFEMK;S(0.499)PVDES(0.499)GDEVQY(0.002)GDVPVENGMAPFFEMK ;; 66.012 0.0053794 56409000 47570.5 48488 31083.2 21476 54221.1 52743.5 66723.6 58192.9 40460.2 61565 TRUE FALSE FALSE 44236.0536 44645.63429 43119.44748 49997.21334 47420.18405 46236.54323 50028.64955 44943.64701 43967.32271 46148.72328 0.958554223 0.967429457 0.934358405 1.083393208 1.027551375 1.001902977 1.084074401 0.973887116 0.952731074 1 15.49400312 -5.232483513 24.99100249 1.019084859 0.954845566 0.348720356 0.040159473 846.3834783 730488.6468 0.011269421 0.019515006 5.85E-06 5.232483513 -0.064239294 S(ph)PVDSGTILREPTTK ddPTM_HeLa_A485_30min_R1 4 SPVDSGTILREPTTK 15 1 P49454 P49454 CENPF Centromere protein F 1 0 S(0.983)PVDS(0.01)GT(0.008)ILREPTTK;S(0.989)PVDS(0.009)GT(0.002)ILREPTTK;S(0.991)PVDS(0.005)GT(0.005)ILREPTTK;S(0.981)PVDS(0.017)GT(0.002)ILREPTTK ;;; 109.5 0.0001197 1580670000 1477460 1523290 1267440 1608460 1919880 1635070 1993030 1925840 1442780 2221940 TRUE FALSE FALSE 1806115.88 1701425.515 1736318.799 1696326.097 1728730.006 1720679.737 1567202.859 1453524.72 1732332.712 1668051.25 1.082770017 1.020007937 1.04092653 1.016950826 1.036377034 1.031550881 0.939541192 0.871390924 1.038536863 1 20.66973218 -6.753526405 22.22004154 0.951649816 1.036364252 0.407518054 0.043951219 38.93608259 109335.4098 0.016383743 0.012412966 1.76E-07 6.753526405 0.084714436 S(ph)PVDSGTILREPTTK ddPTM_HeLa_A486_30min_R1 3 SPVDSGTILREPTTK 15 1 P49454 P49454 CENPF Centromere protein F 1 0 S(0.996)PVDS(0.004)GTILREPTTK;S(0.998)PVDS(0.001)GT(0.001)ILREPTTK;S(0.981)PVDS(0.016)GT(0.003)ILREPTTK ;; 108.96 0.00012253 660750000 1186990 1207480 696750 417271 1113270 1176430 1300000 1315290 927670 1388940 TRUE FALSE FALSE 1103788.131 1111794.887 966550.2596 971427.9757 973633.2958 1031294.028 974726.25 1015827.18 1008081.183 1041140.384 1.060172238 1.06786261 0.928357285 0.933042259 0.935160437 0.99054272 0.936210203 0.975687041 0.968247124 1 19.98973318 -4.753592554 24.99981186 0.956156566 1.064017484 0.754052191 0.024099 78.28482462 249407.8868 0.006141814 0.015625731 1.76E-05 4.753592554 0.107860918 S(ph)PVEGLGR ddPTM_HeLa_A485_30min_R1 2 SPVEGLGR 8 0 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 0 S(1)PVEGLGR;S(1)PVEGLGR ; 104.42 0.0014799 1492930000 393330 465910 413760 422750 583860 437030 519210 597730 483120 510140 TRUE FALSE FALSE 480824.9015 520394.1216 566827.042 445843.762 525728.8483 459912.215 408276.5419 451135.7803 580077.7526 382971.4864 1.255510968 1.35883255 1.480076356 1.1641696 1.372762378 1.200904588 1.06607556 1.177987908 1.514676087 1 18.54687746 -6.278174136 21.00930101 1.195187107 1.327618533 0.173031626 0.146744758 197.5005689 247944.4962 0.051357294 0.045510094 5.27E-07 6.278174136 0.132431427 S(ph)PVEGLGR ddPTM_HeLa_A486_30min_R1 2 SPVEGLGR 8 0 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 0 S(1)PVEGLGR;S(1)PVEGLGR ; 87.895 0.004322 1867350000 1114860 1196170 905370 199994 1271450 1098100 932960 1140240 1078420 702670 TRUE FALSE FALSE 1036714.071 1101381.133 1255953.511 465596.1391 1111972.885 962627.5867 699523.5402 880632.2433 1171898.314 526716.8584 1.968256863 2.091030722 2.384494612 0.88395906 2.111139728 1.827599727 1.328082686 1.671927202 2.224911345 1 19.00666811 -11.47508728 0.164399449 1.87E-30 2.058068449 0.235025383 0.430716457 79.80581862 1.617765526 34.31655344 1.985723348 3.35E-12 11.47508728 2.058068449 S(ph)PVFTPR ddPTM_HeLa_A485_30min_R1 1 SPVFTPR 7 0 P52735-3 P52735-3 1 0 S(1)PVFTPR 96.936 0.0039936 0 50868 63459 64536 52737 58795 57875 64382 59842 55981 84736 TRUE FALSE FALSE 62183.41111 70879.97803 88410.55197 55617.88877 52941.16336 60905.24551 50626.25975 45165.65567 67215.87321 63612.87465 0.977528707 1.114239506 1.389821675 0.874318117 0.832239757 0.957435831 0.795849268 0.710008091 1.056639455 1 15.95703116 -5.306925688 22.74642091 0.873958233 1.155900845 0.459736423 0.133873051 124.9225042 62469.76497 0.037466015 0.055571693 4.93E-06 5.306925688 0.281942612 S(ph)PVFTPR ddPTM_HeLa_A486_30min_R1 3 SPVFTPR 7 0 P52735-3 P52735-3 1 0 S(1)PVFTPR;S(1)PVFTPR;S(1)PVFTPR ;; 94.692 0.0043784 0 304038 373688 318061 73470 335212 286634 305276 277210 322736 306946 TRUE FALSE FALSE 282726.5063 344075.6019 441222.7372 171041.873 293166.5852 251272.0114 228892.7159 214095.3345 350711.0163 230084.7237 1.228793036 1.495430015 1.917653332 0.74338648 1.27416797 1.092084721 0.994819266 0.930506515 1.52426902 1 17.81180567 -5.264230601 24.99998026 1.082053357 1.542105908 0.422881846 0.250189376 233.8729921 2094722.854 0.068297252 0.106659503 5.44E-06 5.264230601 0.46005255 S(ph)PVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_A485_30min_R1 3 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PVGKS(0.961)PPS(0.03)T(0.007)GS(0.001)T(0.001)YGSSQK;S(1)PVGKS(0.871)PPS(0.108)T(0.019)GS(0.001)TYGSSQK;S(0.998)PVGKS(0.958)PPS(0.034)T(0.007)GS(0.001)T(0.001)YGSSQK ;; 105.73 8.04E-05 1796800000 945880 592640 357608 1290300 492680 584670 808320 535250 519370 1524210 TRUE FALSE FALSE 1156287.743 661944.0927 489902.0805 1360785.822 443627.0493 615282.4171 635615.8286 403979.0983 623602.7951 1144252.498 1.010517997 0.578494776 0.428141587 1.189235614 0.387700311 0.537715599 0.555485638 0.353050659 0.544987051 1 20.12597401 -4.259575415 23.52850715 0.599242584 1.01051833 0.170388517 0.255422946 124.425656 1570301.148 0.061963193 0.386917051 5.50E-05 4.259575415 0.411275746 S(ph)PVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_A486_30min_R1 3 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PVGKS(0.939)PPS(0.033)T(0.027)GS(0.001)TYGSSQK;S(1)PVGKS(0.772)PPS(0.161)T(0.035)GS(0.026)T(0.005)YGSSQK;S(0.999)PVGKS(0.821)PPS(0.142)T(0.033)GS(0.002)T(0.002)Y(0.001)GSSQK ;; 115.63 3.82E-05 2048630000 1146970 1101920 308920 320357 444963 1118670 1094210 843700 752407 1673480 TRUE FALSE FALSE 1066573.326 1014599.846 428542.0972 745807.2859 389151.5914 980659.8692 820427.0846 651607.9278 817626.2446 1254429.715 0.850245584 0.808813625 0.341623043 0.594538918 0.310221917 0.781757525 0.654023956 0.519445545 0.651791196 1 20.25860021 -8.040865091 20.53831183 1.000000004 0.601382037 0.313348918 0.17299618 879.1817962 441867.7559 0.170940452 0.044136635 9.10E-09 8.040865091 -0.398617968 S(ph)PVGKS(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_A485_30min_R1 2 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PVGKS(0.51)PPS(0.413)T(0.075)GS(0.001)T(0.001)YGSSQKEESAASGGAAYTK;S(1)PVGKS(0.828)PPS(0.036)T(0.128)GS(0.005)T(0.004)YGSSQKEESAASGGAAYTK ; 236.08 1.53E-50 847880000 406980 190873 120529 747240 267620 279601 499420 317390 257493 944690 TRUE FALSE FALSE 497511.2969 213193.937 165117.6927 788059.8291 240974.8131 294240.476 392714.8371 239549.6049 309169.4832 709196.1687 0.701514361 0.300613492 0.232823724 1.111201475 0.339785836 0.414892929 0.553746417 0.337776225 0.435943533 1 19.43582522 -10.52933745 2.982054667 1.020223207 0.48752159 0.281884142 0.243134864 108961769.7 122501487.2 17826088.5 0.061813165 2.96E-11 10.52933745 -0.532701617 S(ph)PVGKSPPS(ph)TGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_A486_30min_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PVGKS(0.412)PPS(0.516)T(0.069)GS(0.002)T(0.002)YGSSQKEESAASGGAAYTK 226.26 2.34E-39 354540000 294290 309550 91758 150030 179140 425550 443300 380870 262040 589140 TRUE FALSE FALSE 273661.7907 285020.1306 127289.155 349277.4221 156670.5908 373049.9677 332381.6513 294154.2153 284753.8382 441615.5093 0.619683378 0.645403353 0.288235246 0.790908414 0.354766958 0.844739281 0.752649407 0.666086696 0.644800357 1 18.75243131 -6.280258938 24.90479719 0.758972709 0.545641042 0.350899498 0.162921685 997.8956468 1320557.747 0.0547952 0.048404659 5.24E-07 6.280258938 -0.213331668 S(ph)PVGKSPPS(ph)TGSTYGSSQKEESAASGGAAYTKR ddPTM_HeLa_A486_30min_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTKR 33 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PVGKS(0.01)PPS(0.451)T(0.411)GS(0.098)T(0.027)Y(0.001)GS(0.002)S(0.001)QKEESAASGGAAYTKR 70.024 0.00077795 224490000 87340 65975 22997 39029 41043 68028 81115 88960 30485 141490 TRUE FALSE FALSE 81217.91702 60746.90072 31902.05428 90861.48442 35895.00423 59635.39702 60819.16905 68705.74998 33127.46435 106059.9831 0.76577343 0.572759857 0.300792564 0.856699028 0.338440599 0.562279903 0.573441248 0.647800876 0.312346499 1 16.6945209 -10.8213482 2.588074074 1.155747712 0.548329884 0.368982396 0.177399583 45658059.66 30280880.13 44319202.89 0.041366017 1.51E-11 10.8213482 -0.607417828 S(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_A485_30min_R1 7 SPVIGSEVFLPNSNHVASGAGEAEER 26 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(0.982)PVIGS(0.018)EVFLPNSNHVASGAGEAEER ;;;;;; 286.75 1.43E-76 11231080000 524103 846385 765564 371054 766600 542134 680136 576018 623455 567724 TRUE FALSE FALSE 640687.9042 945362.3632 1048777.981 391323.7405 690274.6123 570519.2979 534819.3874 434748.6823 748576.6998 426200.855 1.503253447 2.218114657 2.460759919 0.918167422 1.619599314 1.338616033 1.25485292 1.020055866 1.756394177 1 18.70117396 -5.261997562 24.99999834 1.289840887 2.076449874 0.537242724 0.334853138 37.60879262 1684462.884 0.090424201 0.143786249 5.47E-06 5.261997562 0.786608986 S(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_A486_30min_R1 6 SPVIGSEVFLPNSNHVASGAGEAEER 26 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER;S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAEER ;;;;; 282.39 3.74E-76 9881470000 719685 735274 560826 51760.4 585823 482015 522360 517541 652343 369330 TRUE FALSE FALSE 669238.798 677008.2104 777992.8466 120500.827 512343.6168 422548.8901 391660.003 399708.2121 708888.6165 276847.3641 2.417356583 2.445420467 2.810186939 0.435260879 1.850635705 1.526288291 1.414714582 1.443785508 2.56057564 1 18.07873126 -5.226787624 24.99929395 1.497049926 2.546431449 0.478683005 0.523208115 546.0647716 393954.4503 0.137579522 0.238280822 5.93E-06 5.226787624 1.049381523 S(ph)PVIGSEVFLPNSNHVASGAGEAGR ddPTM_HeLa_A485_30min_R1 4 SPVIGSEVFLPNSNHVASGAGEAGR 25 0 H3BT57;H3BUJ5;H3BRN3 H3BT57 PML 1 0 S(1)PVIGSEVFLPNSNHVASGAGEAGR;S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAGR;S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAGR;S(1)PVIGSEVFLPNSNHVASGAGEAGR ;;; 209.4 7.07E-29 1525060000 189208 295938 241450 136985 216630 183207 231199 220981 188374 188039 TRUE FALSE FALSE 231296.6668 330545.3748 330772.4026 144468.1437 195061.5566 192799.4352 181801.4449 166785.0633 226178.9339 141164.3379 1.638492202 2.341564305 2.343172557 1.023403969 1.381804778 1.365780041 1.287870914 1.181495736 1.602238478 1 17.10701614 -5.259574725 24.99959089 1.281030544 2.131125176 0.710818094 0.246526316 85.01834247 1139840.342 0.065949447 0.107230655 5.50E-06 5.259574725 0.850094633 S(ph)PVIGSEVFLPNSNHVASGAGEAGR ddPTM_HeLa_A486_30min_R1 4 SPVIGSEVFLPNSNHVASGAGEAGR 25 0 H3BT57;H3BUJ5;H3BRN3 H3BT57 PML 1 0 S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAGR;S(1)PVIGSEVFLPNSNHVASGAGEAGR;S(0.999)PVIGS(0.001)EVFLPNSNHVASGAGEAGR;S(1)PVIGSEVFLPNSNHVASGAGEAGR ;;; 209.07 7.46E-29 1057210000 132346 148220 110136 10147.3 106743 88727 100464 103555 135390 81226 TRUE FALSE FALSE 123069.2288 136474.5074 152783.6087 23623.42722 93354.2976 77780.76485 75326.8446 79977.78709 147125.7142 60886.48091 2.021289899 2.24145829 2.509319088 0.387991338 1.533251655 1.277471841 1.237168637 1.31355575 2.416393788 1 15.89383431 -5.228502247 24.99965006 1.327455874 2.255766162 0.445254631 0.484590132 609.7308947 462791.86 0.129454058 0.224202131 5.91E-06 5.228502247 0.928310288 S(ph)PVISRPK ddPTM_HeLa_A485_30min_R1 6 SPVISRPK 8 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK ;;;;; 112.83 0.00053333 7266800000 3856050 3574660 2835330 4213130 3409180 3556340 4203320 3454940 3308850 5443550 TRUE FALSE FALSE 4713815.019 3992685.392 3884236.555 4443282.624 3069750.069 3742544.463 3305246.344 2607610.548 3972905.844 4086573.166 1.153488468 0.977025304 0.950487462 1.087288161 0.75117952 0.915814868 0.808806354 0.638092221 0.972185174 1 21.96246013 -5.757341013 24.99987555 0.831047388 1.030884369 0.410125789 0.112842055 100.9853606 616002.4332 0.032855265 0.040871053 1.75E-06 5.757341013 0.199836981 S(ph)PVISRPK ddPTM_HeLa_A486_30min_R1 5 SPVISRPK 8 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK;S(1)PVISRPK ;;;; 121.61 0.00034069 7160460000 3536940 4274770 2120780 1123680 2885630 3835750 3757070 3500370 3300460 4632350 TRUE FALSE FALSE 3289018.771 3936021.657 2942002.812 2615983.828 2523687.378 3362534.164 2817011.348 2703412.164 3586546.53 3472379.408 0.947194527 1.133522923 0.847258455 0.753369238 0.726789063 0.968366002 0.811262543 0.778547459 1.032878643 1 21.72749316 -4.779496544 24.88414339 0.849776688 1.040358696 0.286147912 0.108857514 220.0652003 303266.969 0.027795524 0.058051256 1.66E-05 4.779496544 0.190582008 S(ph)PVLEEAPFSR ddPTM_HeLa_A485_30min_R1 2 SPVLEEAPFSR 11 0 K7EL81;Q9BZL4-3 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 S(1)PVLEEAPFSR;S(1)PVLEEAPFSR ; 107.12 0.00067313 352820000 97467 109004 103674 98871 115735 86024 112040 88274 76663 120667 TRUE FALSE FALSE 119148.1979 121751.0696 142027.3268 104272.0724 104212.017 90528.08362 88101.73872 66624.66309 92048.56091 90586.93761 1.315291156 1.344024567 1.567856587 1.151071834 1.150408875 0.999350304 0.972565593 0.735477596 1.016135034 1 16.46701541 -5.893253673 1.243560773 0.913047412 1.399203997 0.761196729 0.109255504 0.205826992 0.669686426 0.046360739 0.058564754 1.28E-06 5.893253673 0.486156585 S(ph)PVLEEAPFSR ddPTM_HeLa_A486_30min_R1 2 SPVLEEAPFSR 11 0 K7EL81;Q9BZL4-3 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 S(1)PVLEEAPFSR;S(1)PVLEEAPFSR ; 135.5 2.35E-05 365940000 81381 90285 71034 30604 78626 71118 85818 75902 74190 81356 TRUE FALSE FALSE 75676.61215 83130.48779 98540.26716 71247.65864 68763.99392 62344.18423 64345.42871 58620.77153 80620.84893 60983.92806 1.240927152 1.363154038 1.615839948 1.168302222 1.127575676 1.022305158 1.055121091 0.961249519 1.322001575 1 15.89614146 -5.462002628 6.400558742 1.08101271 1.403063424 0.57181135 0.12593571 0.165461352 13.80405349 0.035589104 0.052534026 3.45E-06 5.462002628 0.322050714 S(ph)PVPAQIAITVPK ddPTM_HeLa_A485_30min_R1 4 SPVPAQIAITVPK 13 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK ;;; 194 8.20E-18 8723400000 2095600 2346560 1772330 2438250 2852100 2615760 3535380 3336600 2056660 3077320 TRUE FALSE FALSE 2561758.99 2620969.78 2427988.62 2571445.424 2568134.91 2752717.149 2780017.182 2518293.618 2469412.797 2310200.758 1.108890204 1.134520353 1.050985985 1.113083101 1.111650103 1.19154889 1.203366059 1.090075661 1.068916971 1 21.1395868 -7.939933465 2.104305006 1.002734964 1.128520503 0.479771138 0.041794345 0.283071441 2.792865086 0.044022319 0.012322324 1.15E-08 7.939933465 0.125785539 S(ph)PVPAQIAITVPK ddPTM_HeLa_A486_30min_R1 7 SPVPAQIAITVPK 13 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK ;;;;;; 201.4 1.79E-21 9701960000 2116798 2290004 1391591 898793 2157263 2149206 2546338 2493171 1774109 2665447 TRUE FALSE FALSE 1968421.391 2108535.743 1930452.303 2092435.526 1886678.959 1884058.815 1909217.3 1925530.389 1927890.197 1998001.722 0.985195042 1.055322285 0.966191511 1.047264126 0.944282949 0.942971567 0.955563391 0.963728093 0.964909177 1 20.9301264 -5.774589393 24.99999633 0.958831424 1.013102339 0.436844991 0.028563335 194.589316 369940.0606 0.00824774 0.009407503 1.68E-06 5.774589393 0.054270915 S(ph)PVPSAFSDQSR ddPTM_HeLa_A485_30min_R1 4 SPVPSAFSDQSR 12 0 Q9UQ35;Q9UQ35-2;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.973)PVPS(0.027)AFSDQSR;S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR ;;; 110.91 0.00040424 12583990000 921098 1052849 1025040 1716680 1113180 1025135 1270725 904270 976408 2142160 TRUE FALSE FALSE 1125993.072 1175970.532 1404244.951 1810457.882 1002347.891 1078809.483 999224.2229 682496.3647 1172364.129 1608158.936 0.700175242 0.73125268 0.873200354 1.125795369 0.623289072 0.670835114 0.621346685 0.42439609 0.729010114 1 20.61697857 S(ph)PVPSAFSDQSR ddPTM_HeLa_A486_30min_R1 4 SPVPSAFSDQSR 12 0 Q9UQ35;Q9UQ35-2;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PVPSAFSDQSR;S(0.995)PVPS(0.005)AFSDQSR;S(0.998)PVPS(0.002)AFSDQSR;S(0.983)PVPS(0.016)AFS(0.001)DQSR ;;; 94.402 0.0016973 39003000000 700059 709362 378298 664838 410584 796081 1220956 899188 578211 1960730 TRUE FALSE FALSE 650988.4792 653149.5717 524785.1168 1547776.463 359084.7262 697868.6202 915459.8948 694462.5215 628330.795 1469750.446 0.442924499 0.444394879 0.357057294 1.053087936 0.2443168 0.474821166 0.622867574 0.472503699 0.427508491 1 20.48713978 -10.26560145 3.039398968 1.002869262 0.508455772 0.344810654 0.204885238 22514997.04 30037228.01 600109.0562 0.05127261 5.42E-11 10.26560145 -0.49441349 S(ph)PVPTTLPGLR ddPTM_HeLa_A485_30min_R1 1 SPVPTTLPGLR 11 0 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5 F8VV64 TNS2 Tensin-2 1 0 S(1)PVPTTLPGLR 101.39 0.0011998 189620000 59888 72011 66139 60629 65822 67867 59755 70341 58906 66680 TRUE FALSE FALSE 73209.87899 80432.06004 90606.56837 63941.00875 59268.53056 71420.41118 46987.8561 53089.75946 70727.89388 50057.90315 1.462503908 1.606780448 1.810035232 1.277340934 1.183999465 1.42675595 0.938670083 1.060566986 1.412921625 1 15.61131024 -5.417233558 5.148158137 1.178941503 1.621920071 0.595823539 0.167975885 0.15926478 6.314616625 0.048477743 0.072395225 3.83E-06 5.417233558 0.442978568 S(ph)PVREPIDNLTPEER ddPTM_HeLa_A485_30min_R1 4 SPVREPIDNLTPEER 15 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;H0Y4X3;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER ;;; 193.47 1.02E-18 2523380000 498420 652460 529200 460570 623620 593450 609700 737430 506187 589520 TRUE FALSE FALSE 609291.8095 728759.5214 724973.1018 485729.7729 561530.2031 624522.1244 479432.6142 556574.1363 607774.0879 442563.5133 1.376733036 1.64667782 1.638122168 1.097536869 1.268812693 1.411146888 1.083308045 1.257614149 1.373303649 1 18.75552499 -1 0.124379667 0.953820299 2.930268877 0.395334631 0.162460152 92.82192369 0.789929304 1.045369295 31.94998098 0.1 1 1.976448577 S(ph)PVREPIDNLTPEER ddPTM_HeLa_A486_30min_R1 3 SPVREPIDNLTPEER 15 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;H0Y4X3;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER ;; 187.76 2.70E-18 1857940000 339198 364080 269664 138415 356640 349197 350802 352352 307136 394229 TRUE FALSE FALSE 315421.9718 335228.9748 374085.1227 322237.1151 311906.8857 306116.6245 263027.6292 272129.1414 333758.7958 295511.4924 1.067376329 1.134402497 1.265890269 1.090438522 1.055481407 1.035887376 0.890075804 0.920874986 1.129427465 1 18.17285471 -5.928609532 1.793536433 0.98266989 1.153161104 0.446949922 0.076619713 0.313324027 2.059211133 0.029378072 0.034153376 1.18E-06 5.928609532 0.170491214 S(ph)PVSPLAAQGIPLPAQLTK ddPTM_HeLa_A485_30min_R1 2 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 1 0 S(0.867)PVS(0.133)PLAAQGIPLPAQLTK;S(0.993)PVS(0.007)PLAAQGIPLPAQLTK ; 254.62 6.00E-58 404490000 494900 465450 382110 574140 602670 611180 700770 715670 484530 739960 TRUE FALSE FALSE 604988.7976 519880.3286 523468.3899 605503.8144 542666.0587 643180.4397 551044.7647 540150.8104 581770.7266 555501.59 1.089085627 0.935875501 0.942334638 1.090012748 0.976893799 1.157837262 0.991976935 0.972365912 1.04728904 1 19.08343152 -1.336580862 16.54884873 1.01884227 1.092846823 0 0.069182077 0 0 0.015609887 0 0.046070098 1.336580862 0.074004553 S(ph)PVSPLAAQGIPLPAQLTK ddPTM_HeLa_A486_30min_R1 1 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 1 0 S(0.983)PVS(0.017)PLAAQGIPLPAQLTK 240.61 1.29E-45 194080000 317600 367970 245500 148790 364340 378930 376410 381370 305830 440790 TRUE FALSE FALSE 295337.8801 338810.7171 340564.1747 346390.6394 318641.0799 332181.4693 282228.2367 294540.3762 332339.5906 330413.3149 0.893843761 1.025414842 1.030721703 1.048355571 0.964371184 1.005351341 0.854167263 0.891430106 1.005829897 1 18.3339123 -6.687737848 24.99999759 0.928803571 0.998774867 0.175467421 0.058647545 58.45326647 19826.06166 0.022421385 0.017367523 2.05E-07 6.687737848 0.069971296 S(ph)PVSSLQIR ddPTM_HeLa_A485_30min_R1 6 SPVSSLQIR 9 0 P55197-1;P55197;Q5JT35 P55197-1 MLLT10 Protein AF-10 1 0 S(0.997)PVS(0.002)S(0.001)LQIR;S(1)PVSSLQIR;S(1)PVSSLQIR;S(1)PVSSLQIR;S(1)PVSSLQIR;S(1)PVSSLQIR ;;;;; 128.44 0.00026303 1795980000 366444 361999 326894 903726 339290 377950 460566 409947 323309 725046 TRUE FALSE FALSE 447958.2036 404331.6341 447825.6938 953094.263 305509.0963 397738.8776 362162.3116 309406.8555 388194.1507 544305.3757 0.822990592 0.742839685 0.822747145 1.751028569 0.561282526 0.730727447 0.665366039 0.568443505 0.713191837 1 19.05405676 S(ph)PVSSLQIR ddPTM_HeLa_A486_30min_R1 4 SPVSSLQIR 9 0 P55197-1;P55197;Q5JT35 P55197-1 MLLT10 Protein AF-10 1 0 S(0.998)PVS(0.002)SLQIR;S(1)PVSSLQIR;S(1)PVSSLQIR;S(1)PVSSLQIR ;;; 149.23 7.70E-05 1282890000 307284 356267 301134 476004 342094 370143 390036 361957 304543 675972 TRUE FALSE FALSE 285744.9784 328035.1054 417741.1494 1108161.368 299185.3806 324478.52 292444.8674 279547.2926 330941.0324 506704.2114 0.563928564 0.647389736 0.82442802 2.186998535 0.590453708 0.640370679 0.57715105 0.551697196 0.653124693 1 18.95078429 S(ph)PVSTRPLPSASQK ddPTM_HeLa_A485_30min_R1 9 SPVSTRPLPSASQK 14 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.55)PVS(0.378)T(0.072)RPLPSASQK;S(0.998)PVS(0.001)TRPLPSASQK;S(0.949)PVS(0.039)T(0.01)RPLPS(0.001)ASQK;S(0.998)PVS(0.001)TRPLPSASQK;S(0.995)PVS(0.002)T(0.003)RPLPSASQK;S(0.997)PVS(0.003)TRPLPSASQK;S(0.445)PVS(0.445)T(0.071)RPLPS(0.038)AS(0.001)QK;S(0.83)PVS(0.085)T(0.085)RPLPSASQK;S(0.983)PVS(0.014)T(0.003)RPLPSASQK ;;;;;;;; 164.22 8.98E-11 85932310000 23601498 27083663 19898291 24868233 30128137 28361528 36768820 39842890 24264485 32794997 TRUE FALSE FALSE 28851569.81 30250861.79 27259496.88 26226721.6 27128473.89 29846493.75 28912861.23 30071358.76 29134144.57 24619807.8 1.171884445 1.228720469 1.107218103 1.065269145 1.10189625 1.212295969 1.174373962 1.221429469 1.183361983 1 24.55331616 -6.255675955 24.85013568 1.173136723 1.134787389 0.004984332 0.071289791 1415.732764 6104215.575 0.024070102 0.023462998 5.55E-07 6.255675955 -0.038349334 S(ph)PVSTRPLPSASQK ddPTM_HeLa_A486_30min_R1 7 SPVSTRPLPSASQK 14 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(1)PVSTRPLPSASQK;S(0.988)PVS(0.011)TRPLPSASQK;S(0.997)PVS(0.003)TRPLPSASQK;S(1)PVSTRPLPSASQK;S(0.988)PVS(0.01)T(0.003)RPLPSASQK;S(0.993)PVS(0.005)T(0.002)RPLPSASQK;S(0.997)PVS(0.002)TRPLPSASQK ;;;;;; 152.89 2.02E-08 71515890000 28267800 27939410 17683903 9156714 28173880 24450680 31324160 29903790 21665534 30221220 TRUE FALSE FALSE 26286373.2 25725389.4 24531583.83 21317292.95 24640049.26 21434203.7 23486523.85 23095349.81 23543519.93 22653629.8 1.160360323 1.135596795 1.082898593 0.941010034 1.087686586 0.946170829 1.036766472 1.019498862 1.039282452 1 24.4332389 -4.951435029 3.437091628 1.012194429 1.147598161 0.639671275 0.041644943 0.135603302 3.300713025 0.010586585 0.023879834 1.12E-05 4.951435029 0.135403732 S(ph)PVTTLLECMHK ddPTM_HeLa_A485_30min_R1 2 SPVTTLLECMHK 12 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 S(1)PVTTLLECMHK;S(1)PVTTLLECMHK ; 220.99 3.96E-23 371810000 427800 366620 284180 488390 409640 305250 390790 342990 345210 522770 TRUE FALSE FALSE 522962.6341 409493.0198 389310.0077 515069.509 368854.8033 321232.418 307294.524 258871.1647 414490.4805 392453.0599 1.33254824 1.043419103 0.991991266 1.312435962 0.939869862 0.818524432 0.783009627 0.659623255 1.05615301 1 18.58216058 -5.951344268 6.406377491 0.84130039 1.147776868 0.503230806 0.143133284 0.161757653 15.37159255 0.044168003 0.049939443 1.12E-06 5.951344268 0.306476478 S(ph)PVTTLLECMHK ddPTM_HeLa_A486_30min_R1 2 SPVTTLLECMHK 12 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 S(1)PVTTLLECMHK;S(0.999)PVT(0.001)TLLECMHK ; 247.93 2.43E-28 426200000 449990 536860 270850 161116 366890 456890 468380 418630 409610 512690 TRUE FALSE FALSE 418448.0248 494317.2584 375730.3736 375086.1904 320871.2351 400523.5571 351186.37 323317.0876 445115.3246 384309.0869 1.088831982 1.286249207 0.977677568 0.976001357 0.834930128 1.042191222 0.913812298 0.841294413 1.158222222 1 18.55190756 -4.834576155 7.615193991 0.957655076 1.186586105 0.433621928 0.099886817 0.175464059 15.51695013 0.024830526 0.052363303 1.46E-05 4.834576155 0.228931029 S(ph)PVVELSK ddPTM_HeLa_A485_30min_R1 2 SPVVELSK 8 0 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 1 0 S(1)PVVELSK;S(1)PVVELSK ; 115.7 0.00096962 406970000 774660 546930 514450 1097150 754860 573800 759330 535900 615380 1287190 TRUE FALSE FALSE 946980.4445 610888.7058 704766.4631 1157084.526 679703.4879 603843.2807 597092.9423 404469.6847 738881.1214 966317.222 0.979989203 0.632182364 0.729332405 1.197416852 0.703395813 0.624891358 0.617905724 0.418568225 0.764636193 1 19.88213735 -5.981506796 24.99976229 0.646820224 0.867443129 0.178629796 0.196978154 376.4719612 508925.4441 0.060638608 0.068747036 1.04E-06 5.981506796 0.220622905 S(ph)PVVELSK ddPTM_HeLa_A486_30min_R1 4 SPVVELSK 8 0 P25098 P25098 ADRBK1 Beta-adrenergic receptor kinase 1 1 0 S(1)PVVELSK;S(1)PVVELSK;S(1)PVVELSK;S(1)PVVELSK ;;; 152.54 0.00018958 588438000 1107800 1482990 697340 482444 1119550 1452120 1429240 1359470 1170130 1661390 TRUE FALSE FALSE 1030148.941 1365472.471 967368.7234 1123154.013 979125.5996 1272972.198 1071629.035 1049948.358 1271557.811 1245367.13 0.827184945 1.096441715 0.776773933 0.901865792 0.786214423 1.022166209 0.860492468 0.843083403 1.02103049 1 20.24813968 -7.773511088 24.99161642 1.010515351 0.89288744 0.204357424 0.095476321 400.5724528 829263.8922 0.08522087 0.022681362 1.68E-08 7.773511088 -0.117627911 S(ph)PVWPTFPFHR ddPTM_HeLa_A485_30min_R1 2 SPVWPTFPFHR 11 0 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 S(1)PVWPTFPFHR;S(1)PVWPTFPFHR ; 165.11 4.15E-08 835840000 438410 559500 471570 374700 415870 405720 433690 352400 370900 482680 TRUE FALSE FALSE 535932.792 624928.658 646023.3667 395168.9122 374464.5226 426962.8718 341028.5886 265973.3475 445336.2279 362356.7591 1.479019719 1.724622606 1.782837909 1.090552066 1.03341393 1.178294212 0.941140409 0.734009621 1.228999368 1 18.46705128 -5.317756547 5.585910785 1.016763048 1.668135777 0.797983128 0.145937587 0.086879149 5.949635436 0.04218803 0.063973984 4.81E-06 5.317756547 0.651372729 S(ph)PVWPTFPFHR ddPTM_HeLa_A486_30min_R1 2 SPVWPTFPFHR 11 0 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 S(1)PVWPTFPFHR;S(1)PVWPTFPFHR ; 163.34 4.70E-08 476730000 677660 685470 471460 135591 522490 485680 522410 500220 537470 620500 TRUE FALSE FALSE 630159.5334 631150.8608 654021.9381 315662.7004 456954.4322 425761.7396 391697.4925 386330.8257 584058.3323 465122.7612 1.354824115 1.356955439 1.40612757 0.678665348 0.982438337 0.915374983 0.842137872 0.8305997 1.255707914 1 18.82725202 -5.244156718 24.86772813 0.920221806 1.371067746 0.676653431 0.140349877 427.7141672 615429.754 0.037040959 0.06395432 5.70E-06 5.244156718 0.450845939 S(ph)PYGGGRPGR ddPTM_HeLa_A486_30min_R1 2 SPYGGGRPGR 10 1 P46781 P46781 RPS9 40S ribosomal protein S9 1 0 S(0.995)PY(0.005)GGGRPGR;S(0.997)PY(0.003)GGGRPGR ; 65.408 0.009475 441290000 193046 265950 326070 16462.2 378240 160652 121070 166926 235040 90132 TRUE FALSE FALSE 179514.4723 244875.1534 452333.0365 38324.83355 330797.6123 140832.3896 90777.00545 128920.5938 255413.4564 67562.36054 2.65701895 3.624431584 6.695044887 0.567251251 4.896181981 2.084480005 1.343603224 1.908171839 3.780410489 1 16.04393211 -6.351111446 10.14739914 2.033849404 3.677492292 0.210889581 1.610022377 0.851002949 92.09623825 0.555974944 0.49009123 4.46E-07 6.351111446 1.643642889 S(ph)PYKFPS(ph)SPLR ddPTM_HeLa_A485_30min_R1 1 SPYKFPSSPLR 11 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 2 0 S(0.999)PY(0.001)KFPS(0.643)S(0.357)PLR 70.197 0.014826 178790000 285940 203920 173990 433470 278870 209780 301220 216660 223220 528110 TRUE FALSE FALSE 349546.3665 227766.6701 238356.1413 457149.3685 251104.7236 220763.7564 236861.8863 163523.7953 268018.2065 396461.8961 0.881664467 0.574498262 0.601208196 1.153072648 0.633364079 0.556834739 0.597439221 0.412457784 0.676025134 1 18.59682269 -4.241565066 22.82140335 0.674033659 0.881665118 0.065974029 0.20991081 3876.502362 4451102.392 0.053381031 1.720458403 5.73E-05 4.241565066 0.207631459 S(ph)PYKFPS(ph)SPLR ddPTM_HeLa_A486_30min_R1 2 SPYKFPSSPLR 11 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 2 0 S(0.999)PY(0.001)KFPS(0.541)S(0.459)PLR;S(1)PYKFPS(0.613)S(0.387)PLR ; 84.14 0.0049623 550570000 659240 705780 352160 294720 504690 751880 772960 699980 558170 894120 TRUE FALSE FALSE 613030.6803 649851.4224 488525.7832 686123.0543 441387.0742 659120.6902 579557.2325 540609.8345 606552.625 670226.5323 0.91466191 0.969599667 0.728896514 1.023718133 0.658564012 0.983429719 0.864718427 0.80660763 0.904996439 1 19.35428927 -8.019251773 21.56315303 1.000000015 0.868472444 0.118440736 0.108194694 446.5326113 500146.7872 0.09645388 0.024904285 9.57E-09 8.019251773 -0.131527571 S(ph)PYNGVR ddPTM_HeLa_A485_30min_R1 1 SPYNGVR 7 0 Q9UK58;Q9UK58-6 Q9UK58 CCNL1 Cyclin-L1 1 0 S(0.997)PY(0.003)NGVR 62.463 0.03259 305060000 272650 338350 356900 263400 413030 279570 339330 393260 289750 349250 TRUE FALSE FALSE 333300.0519 377917.0892 488932.1618 277788.875 371907.283 294207.8529 266829.3734 296812.3684 347900.1673 262188.4025 1.271223474 1.441395141 1.864812315 1.059501002 1.418473432 1.122123824 1.017700901 1.13205758 1.326909062 1 18.00024435 -5.290773461 24.99920586 1.16336053 1.517368947 0.459887372 0.184466226 632.9001024 539371.266 0.05239045 0.077721564 5.12E-06 5.290773461 0.354008417 S(ph)PYQEFTDHLVK ddPTM_HeLa_A485_30min_R1 5 SPYQEFTDHLVK 12 0 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 S(1)PYQEFTDHLVK;S(1)PYQEFTDHLVK;S(1)PYQEFTDHLVK;S(1)PYQEFTDHLVK;S(0.985)PY(0.015)QEFTDHLVK ;;;; 219.97 4.27E-23 1127686000 1297757 1077490 831029 1476740 1175552 1082921 1373972 1196444 1035722 1928230 TRUE FALSE FALSE 1586438.567 1203493.083 1138461.209 1557410.567 1058509.915 1139621.069 1080411.658 903014.233 1243581.905 1447557.747 1.095941471 0.831395559 0.786470323 1.075888385 0.731238472 0.787271576 0.746368606 0.623819143 0.859089668 1 20.46518947 -5.791196677 24.9999721 0.770041041 0.927639665 0.248422005 0.128081815 278.3054113 233811.0578 0.038585349 0.043757556 1.62E-06 5.791196677 0.157598624 S(ph)PYQEFTDHLVK ddPTM_HeLa_A486_30min_R1 4 SPYQEFTDHLVK 12 0 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 S(1)PYQEFTDHLVK;S(0.999)PY(0.001)QEFTDHLVK;S(0.999)PYQEFT(0.001)DHLVK;S(1)PYQEFTDHLVK ;;; 170.47 1.04E-10 906770000 702290 782320 410255 227482 556380 679450 724350 663240 576971 811070 TRUE FALSE FALSE 653063.0976 720326.114 569116.723 529589.5923 486593.6324 595626.3671 543109.9686 512234.7304 626983.3108 607972.7928 1.074165004 1.184799916 0.936089131 0.871074493 0.800354289 0.97969247 0.893312949 0.842529035 1.031268699 1 19.21364724 -4.830592317 6.123177758 0.90740632 1.128642179 0.569481914 0.072719253 0.118724389 7.820538137 0.018483161 0.039820088 1.48E-05 4.830592317 0.221235859 S(ph)PYSGPK ddPTM_HeLa_A485_30min_R1 3 SPYSGPK 7 0 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 S(0.999)PYSGPK;S(1)PYSGPK;S(1)PYSGPK ;; 89.698 0.0068896 6952600000 9044300 7177700 6233100 12537700 9402500 6992100 9931500 8832700 7793700 15669900 TRUE FALSE FALSE 11056173.33 8017069.577 8538983.071 13222602.8 8466354.086 7358195.544 7809553.892 6666466.476 9357824.102 11763682.31 0.939856504 0.681510208 0.725876715 1.124019032 0.719702714 0.625501042 0.66386984 0.566698955 0.795484258 1 23.48783639 -5.969765606 24.99998791 0.696135003 0.854056011 0.137398801 0.158566025 349.6670539 289128.5278 0.048428662 0.054912379 1.07E-06 5.969765606 0.157921008 S(ph)PYSGPK ddPTM_HeLa_A486_30min_R1 3 SPYSGPK 7 0 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 S(1)PYSGPK;S(1)PYSGPK;S(1)PYSGPK ;; 98.582 0.0048744 7392600000 4698150 6661290 3399520 2111050 4850420 6120680 6526720 5851210 4934960 6512340 TRUE FALSE FALSE 4368833.946 6133425.12 4715905.186 4914631.087 4242035.095 5365572.732 4893665.623 4519017.214 5362726.306 4881607.676 0.894958021 1.256435488 0.966055754 1.006764864 0.868983207 1.099140506 1.002470077 0.925723146 1.098557414 1 22.21892492 S(ph)QAGVSSGAPPGR ddPTM_HeLa_A485_30min_R1 1 SQAGVSSGAPPGR 13 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 S(1)QAGVSSGAPPGR 135.1 7.86E-05 0 53328 60604 53782 55760 74722 50331 63818 72452 53122 62944 TRUE FALSE FALSE 65190.62962 67691.11062 73678.19986 58806.02761 67282.41532 52966.25333 50182.76295 54683.0334 63783.09814 47253.2192 1.379601871 1.432518498 1.55922075 1.244487224 1.423869452 1.120902538 1.061996702 1.157234032 1.349814874 1 15.528125 -6.260532733 24.98377467 1.143067191 1.408628889 0.59925786 0.110337291 60.08729738 1655797.604 0.037851692 0.035796814 5.49E-07 6.260532733 0.265561698 S(ph)QAGVSSGAPPGR ddPTM_HeLa_A486_30min_R1 1 SQAGVSSGAPPGR 13 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 S(1)QAGVSSGAPPGR 165.49 7.07E-12 184100000 60809 69219 49308 22196 69682 51361 59717 63388 51842 67343 TRUE FALSE FALSE 56546.60312 63733.83435 68401.37811 51673.40972 60941.8338 45024.60202 44775.17498 48955.93615 56335.7063 50479.87447 1.120181136 1.262559288 1.355022746 1.023643784 1.207250106 0.891931735 0.886990617 0.969810972 1.116003296 1 15.6234207 -5.875498893 1.582951963 0.971549398 1.230504028 0.494694054 0.105984946 0.308125796 1.595917563 0.040771413 0.050128437 1.33E-06 5.875498893 0.25895463 S(ph)QCRNSPSNLSSSSDTGSVGGTYR ddPTM_HeLa_A485_30min_R1 1 SQCRNSPSNLSSSSDTGSVGGTYR 24 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.457)QCRNS(0.457)PS(0.086)NLSSSSDTGSVGGTYR 76.162 2.30E-05 0 42083 54586 43579 32401 71923 60839 76968 83023 56864 50609 TRUE FALSE FALSE 51444.21817 60969.35786 59700.68557 34170.98459 64762.09358 64024.43597 60523.15803 62661.47907 68276.08321 37993.10769 1.354040806 1.60474785 1.57135568 0.899399567 1.704574791 1.685159226 1.593003619 1.649285433 1.797064977 1 15.2134501 S(ph)QDDAMVDYFFQR ddPTM_HeLa_A485_30min_R1 4 SQDDAMVDYFFQR 13 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR ;;; 243.04 4.75E-35 178902000 93090.7 116216.5 89885.7 114936 132746.5 107809.5 139306 130990 94818 147360 TRUE FALSE FALSE 113798.4051 129807.0087 123138.1609 121214.6626 119529.7924 113454.2387 109542.1351 98864.49712 113847.1029 110625.864 1.028678114 1.173387525 1.113104626 1.095717207 1.08048686 1.02556703 0.990203657 0.89368339 1.029118316 1 16.7553292 -6.393838434 1.636680428 0.967723077 1.108549647 0.602775997 0.04619985 0.232841499 1.243484977 0.020445707 0.016826341 4.04E-07 6.393838434 0.140826569 S(ph)QDDAMVDYFFQR ddPTM_HeLa_A486_30min_R1 4 SQDDAMVDYFFQR 13 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR ;;; 281.92 8.06E-49 171791000 166282 172949 132677 75509.7 198216 184385 215335 211063 143275 216397 TRUE FALSE FALSE 154626.4905 159243.8914 184053.0876 175790.3976 173353.901 161637.4534 161455.9054 163008.5624 155694.1924 162209.7827 0.953250093 0.981715706 1.134660836 1.08372254 1.068701888 0.996471672 0.995352455 1.004924362 0.959832322 1 17.3075013 -6.328621586 6.979535374 0.99153448 1.04806316 0.226365657 0.048864264 0.44060921 39.22867913 0.019051675 0.01680296 4.69E-07 6.328621586 0.05652868 S(ph)QDKLDKDDLEKEK ddPTM_HeLa_A486_30min_R1 1 SQDKLDKDDLEKEK 14 3 A0A096LNH6;Q14185 A0A096LNH6 DOCK1 Dedicator of cytokinesis protein 1 1 0 S(1)QDKLDKDDLEKEK 84.375 0.014703 105680000 100120 67812 25476 144480 55109 115420 198190 177530 46005 369750 TRUE FALSE FALSE 93102.10502 62438.33015 35340.98947 336356.7416 48196.71535 101180.6539 148600.7658 137110.2945 49992.75044 277162.1933 0.335911994 0.225277226 0.127510138 1.213573675 0.173893541 0.365059364 0.536150923 0.494693352 0.180373628 1 18.08037095 -10.6658006 3.032304021 1.05669507 0.414514404 0.260673266 0.299874379 331843530.4 334975579 146147591 0.072932155 2.16E-11 10.6658006 -0.642180666 S(ph)QDKSLLDGEGPQAVGGQDVAFSR ddPTM_HeLa_A486_30min_R1 2 SQDKSLLDGEGPQAVGGQDVAFSR 24 1 A1X283 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 S(0.5)QDKS(0.5)LLDGEGPQAVGGQDVAFSR;S(0.538)QDKS(0.462)LLDGEGPQAVGGQDVAFSR ; 159.75 2.02E-11 418510000 85742 101041 37840 54296 91343 143350 178834 225740 84888 193126 TRUE FALSE FALSE 79731.92857 93034.14317 52492.66139 126403.832 79885.9092 125664.9345 134087.8417 174343.9299 92246.16019 144765.9926 0.550764217 0.642651921 0.36260354 0.873159709 0.551827869 0.868055627 0.926238541 1.204315508 0.637208771 1 17.14336321 -6.389639661 2.477685242 0.959706102 0.59640712 0.471001902 0.175312167 0.256173385 3.07556042 0.067401675 0.05738194 4.08E-07 6.389639661 -0.363298982 S(ph)QDQDS(ph)EVNELSR ddPTM_HeLa_A485_30min_R1 1 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 S(1)QDQDS(1)EVNELSR 158.92 4.44E-07 0 178690 181910 136220 197760 131070 142130 168990 134480 123650 220980 TRUE FALSE FALSE 218438.974 203182.7921 186613.4466 208563.128 118020.2106 149571.707 132883.906 101498.5691 148465.4208 165893.7528 1.316740204 1.224776633 1.124897372 1.257209054 0.711420464 0.90161145 0.801018144 0.61182876 0.894942807 1 17.33990003 -5.756589964 24.99999533 0.803846146 1.22289606 0.768623526 0.110157007 54.93640815 283209.6365 0.032213661 0.040250088 1.75E-06 5.756589964 0.419049915 S(ph)QDQDS(ph)EVNELSR ddPTM_HeLa_A486_30min_R1 1 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 0 S(1)QDQDS(1)EVNELSR 212.41 1.25E-22 0 194730 210240 109270 58114 160580 182310 164520 136670 145160 231510 TRUE FALSE FALSE 181080.4326 193579.8167 151582.2704 135292.3289 140438.5591 159818.4458 123355.3559 105553.2245 157742.5857 173538.3891 1.043460375 1.115486998 0.873479759 0.779610377 0.809265084 0.92094001 0.710824599 0.608241352 0.908978045 1 17.40489532 -4.874612776 4.101054231 0.803976651 1.079356902 0.472890774 0.106850749 0.167893698 5.063917229 0.028444599 0.065028765 1.33E-05 4.874612776 0.275380252 S(ph)QDQDSEVNELSR ddPTM_HeLa_A486_30min_R1 1 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 S(1)QDQDSEVNELSR 185.74 3.40E-15 0 37040 43049 27019 9442.6 30247 27020 36826 29550 34981 46185 TRUE FALSE FALSE 34443.68727 39637.64046 37481.48039 21982.85 26453.13922 23686.54712 27611.74529 22822.11007 38013.18125 34619.97539 0.994907908 1.144935547 1.082654738 0.634975899 0.764100463 0.684187289 0.797566867 0.659217975 1.098012948 1 15.07931708 -5.241974118 24.35031981 0.78413571 1.081243089 0.419734488 0.143196856 496.6881257 621336.8283 0.037097413 0.064119914 5.73E-06 5.241974118 0.297107379 S(ph)QDVELWEGEVVK ddPTM_HeLa_A485_30min_R1 4 SQDVELWEGEVVK 13 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK ;;; 198.95 2.10E-21 165099000 222304 188052 152492 266579 234352 238111 315077 264450 193862 413581 TRUE FALSE FALSE 271754.7579 210043.0456 208905.1365 281141.5358 211019.092 250578.1238 247758.225 199593.2229 232768.3252 310482.8681 0.875264904 0.676504462 0.672839496 0.905497741 0.679648102 0.807059421 0.79797712 0.642847781 0.749697807 1 18.24415414 -10.63471836 2.674208675 1.026020418 0.753070135 0.422285224 0.085409373 18025439.95 16308483.94 3247678.758 0.021063845 2.32E-11 10.63471836 -0.272950284 S(ph)QDVELWEGEVVK ddPTM_HeLa_A486_30min_R1 4 SQDVELWEGEVVK 13 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK;S(1)QDVELWEGEVVK ;;; 244.97 3.78E-35 197472000 258918 266258 141596 119859 235291 291169 349358 329028 207247 367434 TRUE FALSE FALSE 240769.1853 245158.7464 196425.7633 279037.8093 205778.6088 255247.5292 261944.9333 254115.507 225211.3368 275426.1348 0.874169713 0.890107057 0.713170387 1.013113042 0.747128114 0.92673678 0.951053296 0.922626704 0.817683249 1 18.07130594 S(ph)QEADVQDWEFR ddPTM_HeLa_A485_30min_R1 2 SQEADVQDWEFR 12 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)QEADVQDWEFR;S(1)QEADVQDWEFR ; 241.29 8.23E-28 1404190000 632070 703120 585680 722890 792710 659750 871490 859940 634160 951520 TRUE FALSE FALSE 772671.7909 785343.7677 802347.4042 762379.6502 713785.009 694293.4898 685289.0421 649038.3667 761430.0951 714323.5754 1.081683172 1.099422999 1.123226829 1.067274939 0.999246047 0.971959366 0.959353808 0.908605552 1.065945632 1 19.44621821 -5.735272063 2.513170772 0.974640742 1.101247858 0.666859198 0.038177654 0.156898618 2.028964791 0.012189096 0.015689075 1.84E-06 5.735272063 0.126607116 S(ph)QEADVQDWEFR ddPTM_HeLa_A486_30min_R1 2 SQEADVQDWEFR 12 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)QEADVQDWEFR;S(1)QEADVQDWEFR ; 176.29 3.89E-11 994690000 642370 597790 330060 769740 580510 1058350 1531670 1337280 527020 1695080 TRUE FALSE FALSE 597343.1802 550418.9433 457868.0713 1791993.621 507697.0228 927781.5375 1148429.966 1032810.537 572702.5179 1270620.935 0.470119108 0.433188946 0.360349856 1.410329054 0.399566077 0.730179641 0.903833657 0.812839226 0.450726493 1 20.27710226 S(ph)QEDLNEPIKR ddPTM_HeLa_A485_30min_R1 2 SQEDLNEPIKR 11 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(1)QEDLNEPIKR;S(1)QEDLNEPIKR ; 129.38 2.73E-05 2630800000 1177130 901630 733450 1610780 1250050 1125100 1726770 1408650 903350 2096880 TRUE FALSE FALSE 1438978.507 1007067.785 1004783.676 1698772.833 1125590.633 1184008.496 1357831.483 1063176.379 1084644.059 1574166.406 0.914120961 0.639746714 0.638295718 1.079157087 0.715039165 0.752149513 0.862571757 0.675390082 0.689027573 1 20.58615663 S(ph)QEDLNEPIKR ddPTM_HeLa_A486_30min_R1 2 SQEDLNEPIKR 11 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(1)QEDLNEPIKR;S(1)QEDLNEPIKR ; 168.5 2.49E-08 2548300000 1585540 1587510 764160 735500 1428430 1887560 2312200 1976400 1292130 2525100 TRUE FALSE FALSE 1474401.834 1461709.926 1060063.217 1712281.17 1249262.99 1654692.039 1733663.104 1526416.865 1404132.869 1892798.524 0.778953393 0.772248027 0.560050741 0.904629388 0.660008434 0.874203999 0.915925854 0.806433883 0.741829017 1 20.85208942 -6.281214429 24.35218849 0.858596138 0.736922114 0.286539332 0.104028985 856.1169764 1054270.178 0.035726576 0.031556173 5.23E-07 6.281214429 -0.121674024 S(ph)QEELREDK ddPTM_HeLa_A485_30min_R1 1 SQEELREDK 9 1 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 1 0 S(1)QEELREDK 126.09 0.00013997 708590000 473770 375400 230280 760360 492780 456530 668960 506930 319460 1089300 TRUE FALSE FALSE 579158.502 419299.7645 315470.1548 801896.5415 443717.0929 480433.2049 526031.2311 382604.6227 383572.6917 817757.5571 0.708227637 0.512743369 0.385774674 0.980604257 0.542602253 0.587500783 0.643260617 0.467870482 0.469054292 1 19.64131366 -10.05151027 4.644063752 1.000015064 0.588625633 0.37967431 0.157747273 105842220.2 2.62430411 18330.04135 0.038056012 8.88E-11 10.05151027 -0.411389431 S(ph)QEELREDK ddPTM_HeLa_A486_30min_R1 1 SQEELREDK 9 1 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 1 0 S(1)QEELREDK 119.25 0.00024174 608690000 647930 611150 253140 379670 572040 816050 966000 854610 519170 1327300 TRUE FALSE FALSE 602513.4529 562720.2482 351162.5873 883890.9475 500289.4091 715374.048 724296.5827 660033.959 564172.0736 994935.4407 0.605580451 0.565584685 0.352950124 0.888390253 0.502836052 0.719015545 0.727983498 0.663393756 0.567043901 1 19.92424339 -14 0.172674374 2.452442097 0.539581269 0.416719255 0.135627828 130.5111434 1.237654837 65.18704837 0.463226954 1.00E-14 14 -1.912860829 S(ph)QEEPKDTFEHDPSESIDEFNK ddPTM_HeLa_A485_30min_R1 4 SQEEPKDTFEHDPSESIDEFNK 22 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(1)QEEPKDTFEHDPSESIDEFNK;S(0.91)QEEPKDT(0.089)FEHDPS(0.001)ESIDEFNK;S(1)QEEPKDTFEHDPSESIDEFNK;S(1)QEEPKDTFEHDPSESIDEFNK ;;; 295.3 1.44E-87 3728260000 864406 559260 335011 1730775 802255 810347 1514867 1186455 587116 2300480 TRUE FALSE FALSE 1056690.133 624660.5921 458945.5099 1825322.856 722379.6753 852775.5159 1191203.29 895475.051 704944.7959 1727012.673 0.611860092 0.361700063 0.265745305 1.056924992 0.418282788 0.493786484 0.689747857 0.51851099 0.40818739 1 20.71984724 -10.4834188 2.902141485 1.014627106 0.537615774 0.307347892 0.208920181 70490241.69 79431833.75 8283969.17 0.051076623 3.29E-11 10.4834188 -0.477011332 S(ph)QEEPKDTFEHDPSESIDEFNK ddPTM_HeLa_A486_30min_R1 5 SQEEPKDTFEHDPSESIDEFNK 22 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.866)QEEPKDT(0.134)FEHDPSESIDEFNK;S(1)QEEPKDTFEHDPSESIDEFNK;S(1)QEEPKDTFEHDPSESIDEFNK;S(1)QEEPKDTFEHDPSESIDEFNK;S(0.998)QEEPKDT(0.002)FEHDPSESIDEFNK ;;;; 387.39 2.71E-158 9500430000 3935800 3201430 1002366 1899380 2334820 4408060 6201140 5238520 2473700 7341220 TRUE FALSE FALSE 3659920.744 2947737.027 1390508.959 4421852.629 2041965.104 3864238.375 4649549.183 4045823.352 2688122.308 5502930.729 0.665085738 0.535666752 0.252685165 0.803545029 0.371068655 0.702214614 0.844922354 0.735212481 0.488489214 1 22.39176874 -6.45427288 8.49587246 0.749138975 0.526943515 0.283393001 0.183147942 0.511195335 59.39081409 0.062795312 0.055204162 3.51E-07 6.45427288 -0.22219546 S(ph)QEGLRPR ddPTM_HeLa_A485_30min_R1 5 SQEGLRPR 8 1 Q27J81-2 Q27J81-2 INF2 Inverted formin-2 1 0 S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR ;;;; 126.71 0.00028877 2922361000 748818 689683 759377 1014186 881839 638213 814042 675756 784815 1326050 TRUE FALSE FALSE 915389.9807 770335.4274 1040302.153 1069588.413 794040.0128 671628.8458 640115.2766 510025.7815 942320.1718 995490.1391 0.919536964 0.773825272 1.045015025 1.074433961 0.797637246 0.67467152 0.643015186 0.512336347 0.946589157 1 19.9250475 -5.961324805 7.15938269 0.719634862 0.9466098 0.25724806 0.154153225 0.242822321 34.87321824 0.048009749 0.054194122 1.09E-06 5.961324805 0.226974938 S(ph)QEGLRPR ddPTM_HeLa_A486_30min_R1 5 SQEGLRPR 8 1 Q27J81-2 Q27J81-2 INF2 Inverted formin-2 1 0 S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR ;;;; 108.9 0.00061963 3656120000 988822 1108792 827932 361370 1037552 1091513 1148170 1032227 992442 1191033 TRUE FALSE FALSE 919510.6841 1020927.284 1148529.443 841287.6226 907412.5534 956853.2238 860885.7219 797211.4455 1078467.672 892790.5845 1.029928743 1.143523802 1.286448875 0.942312382 1.016377826 1.071755505 0.96426389 0.892943384 1.207973841 1 19.76796229 -5.279074565 24.99776429 1.009675879 1.152322825 0.297143021 0.098279508 961.2785175 1362604.3 0.027337268 0.040644904 5.26E-06 5.279074565 0.142646946 S(ph)QEGLRPRPK ddPTM_HeLa_A485_30min_R1 3 SQEGLRPRPK 10 2 Q27J81-2 Q27J81-2 INF2 Inverted formin-2 1 0 S(1)QEGLRPRPK;S(1)QEGLRPRPK;S(1)QEGLRPRPK ;; 190.85 2.63E-10 4633000000 1098260 1233460 875110 1218460 1417190 1365520 1885330 2065740 1062650 1567680 TRUE FALSE FALSE 1342564.148 1377702.417 1198849.605 1285021.384 1276089.588 1437016.516 1482513.844 1559114.026 1275914.108 1176886.227 1.140776498 1.170633478 1.018662278 1.091882422 1.084293076 1.221032656 1.259691727 1.324778887 1.084143971 1 20.16654343 -6.260769491 24.99304011 1.203338273 1.099995633 0.115988226 0.093472272 94.51700406 3526374.959 0.031109178 0.02941175 5.49E-07 6.260769491 -0.10334264 S(ph)QEGLRPRPK ddPTM_HeLa_A486_30min_R1 4 SQEGLRPRPK 10 2 Q27J81-2 Q27J81-2 INF2 Inverted formin-2 1 0 S(1)QEGLRPRPK;S(1)QEGLRPRPK;S(1)QEGLRPRPK;S(1)QEGLRPRPK ;;; 176.25 3.35E-08 3509130000 1937720 1686420 1025940 731590 1747700 1806240 2246520 2169200 1374350 2484140 TRUE FALSE FALSE 1801895.834 1552781.937 1423211.444 1703178.493 1528487.169 1583404.473 1684416.935 1675320.513 1493479.765 1862095.175 0.96767118 0.833889673 0.764306499 0.914657057 0.820842667 0.850334878 0.904581547 0.899696501 0.802042659 1 20.82849538 -6.754498505 24.77655678 0.893221553 0.854036438 0.080378105 0.067857792 425.047019 1517276.829 0.025720645 0.01947299 1.76E-07 6.754498505 -0.039185115 S(ph)QEMVHLVNK ddPTM_HeLa_A485_30min_R1 9 SQEMVHLVNK 10 0 P16070-14;H0YE40;P16070-4;H0YD13;P16070-8;P16070-5;P16070-7;P16070-3;P16070-6;P16070-17;H0Y2P0;P16070-16;P16070-10;P16070-11;P16070-13;P16070-12;P16070-18;P16070 P16070-14 CD44 CD44 antigen 1 0 S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK ;;;;;;;; 177.38 2.72E-08 15134290000 33701090 20679500 9739250 35243850 11710600 20816970 26936750 17672570 16854850 67943300 TRUE FALSE FALSE 41197781.2 23097787.64 13342203.86 37169132.28 10544651.55 21906914.36 21181493.31 13338344.5 20237463.79 51006285.71 0.807700083 0.452841984 0.261579601 0.728716702 0.206732394 0.429494406 0.415272216 0.261503936 0.396764115 1 25.60417171 -10.32730623 6.928732068 1.000012432 0.430528163 0.452629386 0.18445708 3.45E-05 3.35E-06 0.173733892 0.04213574 4.71E-11 10.32730623 -0.569484269 S(ph)QEMVHLVNK ddPTM_HeLa_A486_30min_R1 10 SQEMVHLVNK 10 0 P16070-14;H0YE40;P16070-4;H0YD13;P16070-8;P16070-5;P16070-7;P16070-3;P16070-6;P16070-17;H0Y2P0;P16070-16;P16070-10;P16070-11;P16070-13;P16070-12;P16070-18;P16070 P16070-14 CD44 CD44 antigen 1 0 S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK;S(1)QEMVHLVNK ;;;;;;;;; 172.58 1.45E-07 12124630000 18430370 19957980 12307380 5755380 19206770 24899310 19395490 16842150 24071350 34457530 TRUE FALSE FALSE 17138496.24 18376436.98 17073127.14 13398815.5 16797677.81 21827486.29 14542533.26 13007560.11 26157874 25829140.21 0.663533362 0.711461428 0.661002534 0.518748026 0.650338249 0.845072121 0.563028159 0.503600197 1.012727245 1 24.62249628 -7.774830345 24.99798126 1.006364047 0.64333343 0.710417315 0.093640864 146.1542301 272829.3985 0.09242565 0.024414317 1.68E-08 7.774830345 -0.363030616 S(ph)QENILQGFSTSHK ddPTM_HeLa_A485_30min_R1 2 SQENILQGFSTSHK 14 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(1)QENILQGFSTSHK;S(1)QENILQGFSTSHK ; 247 8.96E-36 357240000 495320 483540 437650 342430 701850 435820 654850 558250 492690 682170 TRUE FALSE FALSE 605502.2252 540085.7968 599554.9471 361136.0838 631971.3497 458638.8613 514935.9479 421338.3122 591568.3638 512117.5734 1.182350024 1.054612895 1.170736913 0.705181979 1.234035664 0.89557337 1.005503374 0.822737461 1.155141699 1 18.96611554 S(ph)QENILQGFSTSHK ddPTM_HeLa_A486_30min_R1 2 SQENILQGFSTSHK 14 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(1)QENILQGFSTSHK;S(1)QENILQGFSTSHK ; 220.82 7.55E-28 250220000 288650 272990 183972 22359 306140 304340 351090 356620 269140 229240 TRUE FALSE FALSE 268417.1256 251357.2782 255210.8853 52052.88196 267741.0666 266793.6251 263243.5685 275425.411 292469.2719 171836.8119 1.562046704 1.462767351 1.485193321 0.302920436 1.558112395 1.552598783 1.531939319 1.602831244 1.702017563 1 17.39067961 S(ph)QERDNLGMLVWSPNQNLSEAK ddPTM_HeLa_A485_30min_R1 2 SQERDNLGMLVWSPNQNLSEAK 22 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 S(1)QERDNLGMLVWSPNQNLSEAK;S(1)QERDNLGMLVWSPNQNLSEAK ; 122.77 2.23E-06 89237000 79870 90803 70542 126482 125040 93588 156250 139660 95742 159763 TRUE FALSE FALSE 97636.80595 101421.621 96638.4213 133391.3914 112590.5786 98488.12297 122865.9111 105408.166 114956.5412 119937.0243 0.81406727 0.845623956 0.805743029 1.112178597 0.938747473 0.821165303 1.024420205 0.878862608 0.958474181 1 16.87191756 S(ph)QERDNLGMLVWSPNQNLSEAK ddPTM_HeLa_A486_30min_R1 2 SQERDNLGMLVWSPNQNLSEAK 22 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 S(1)QERDNLGMLVWSPNQNLSEAK;S(0.999)QERDNLGMLVWS(0.001)PNQNLSEAK ; 114.24 4.72E-05 125094000 38990.6 41027 27030.7 19074 51606 46544 62021 65687 37581 57581 TRUE FALSE FALSE 36257.56029 37775.8711 37497.71095 44405.23595 45133.09427 40801.8745 46502.68981 50731.50404 40838.55134 43162.34281 0.840027624 0.875204371 0.868759861 1.028795776 1.045659048 0.945311859 1.077390308 1.17536493 0.9461616 1 15.39748555 -5.263035837 4.716589152 1.038390288 0.860636112 0.603981162 0.062942868 0.128156084 8.211043372 0.018089117 0.029703413 5.46E-06 5.263035837 -0.177754176 S(ph)QESDGVEYIFISK ddPTM_HeLa_A486_30min_R1 1 SQESDGVEYIFISK 14 0 U5GXS2;S4R337;Q5T2T1-2;Q5T2T1 U5GXS2 MPP7 MAGUK p55 subfamily member 7 1 0 S(0.979)QES(0.021)DGVEYIFISK 87.647 0.0015707 20273000 15986 14760 8674.6 5372.7 15858 20965 18989 19406 10242 13948 TRUE FALSE FALSE 14865.46395 13590.36385 12033.63743 12507.91712 13868.94177 18378.55146 14237.75135 14987.67743 11129.78481 10455.33001 1.421807244 1.299850299 1.150957207 1.196319686 1.326494884 1.757816485 1.361769675 1.433496352 1.064508226 1 13.35195098 -7.833579611 5.505797843 1.011004999 1.36442257 0.427066533 0.156075846 0.220491968 11.4189538 0.163565007 0.0430727 1.47E-08 7.833579611 0.353417571 S(ph)QESGYYDR ddPTM_HeLa_A485_30min_R1 3 SQESGYYDR 9 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(1)QESGYYDR;S(0.998)QES(0.002)GYYDR;S(1)QESGYYDR ;; 131.69 0.00022793 2738200000 707526 1039600 1138630 646836 1077870 912400 915429 875108 888010 876998 TRUE FALSE FALSE 864912.7178 1161172.177 1559856.619 682171.0128 970553.4782 960171.8532 719840.1158 660486.3909 1066225.462 658378.5386 1.313701263 1.763684733 2.369239773 1.036137986 1.474157223 1.458388749 1.093352948 1.003201581 1.619471777 1 19.32855778 -5.286254816 24.99927212 1.253467963 1.810356384 0.41276355 0.313942512 748.5984892 754142.5434 0.088857907 0.131860635 5.17E-06 5.286254816 0.556888421 S(ph)QESGYYDR ddPTM_HeLa_A486_30min_R1 2 SQESGYYDR 9 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.998)QES(0.002)GYYDR;S(0.999)QES(0.001)GYYDR ; 145.83 9.69E-05 1942250000 717820 735410 518740 206897 782460 700320 727740 715210 681880 819710 TRUE FALSE FALSE 667504.5248 677133.4333 719610.0203 481666.672 684316.5707 613921.6387 545651.7548 552372.2959 740985.9074 614449.2806 1.086346011 1.102016805 1.171146331 0.783899806 1.113707172 0.999141277 0.888033841 0.898971345 1.205935023 1 19.2289344 -5.15690145 19.08887702 0.981594291 1.118060366 0.232537694 0.112777854 7.696121442 1396.830793 0.029784159 0.051588215 6.97E-06 5.15690145 0.136466075 S(ph)QESGYYDRMDYEDDRLR ddPTM_HeLa_A485_30min_R1 2 SQESGYYDRMDYEDDRLR 18 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.67)QES(0.33)GYYDRMDYEDDRLR;S(0.999)QES(0.001)GYYDRMDYEDDRLR ; 162.01 2.42E-12 689410000 133982 209990 190398 133618 323970 342990 387020 611650 185363 174791 TRUE FALSE FALSE 163785.8337 234546.5038 260834.1433 140917.213 291714.4093 360948.426 304330.0153 461641.8785 222563.6538 131218.8205 1.248188583 1.787445604 1.987779972 1.073910072 2.223114094 2.750736706 2.319255837 3.51810721 1.696126006 1 17.00161513 -5.930243516 7.420807227 2.425700934 1.57933195 0.200097886 0.667183957 0.306918932 27.62383045 0.196853282 0.22344273 1.17E-06 5.930243516 -0.846368984 S(ph)QESGYYDRMDYEDDRLR ddPTM_HeLa_A486_30min_R1 1 SQESGYYDRMDYEDDRLR 18 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(1)QESGYYDRMDYEDDRLR 125.62 5.39E-06 92689000 36830 32815 41893 19956 73458 46667 59252 66014 33167 48518 TRUE FALSE FALSE 34248.40719 30214.61989 58115.09153 46458.57652 64244.21267 40909.70002 44426.5229 50984.05328 36041.94226 36368.777 0.941698072 0.830784601 1.59793912 1.277430267 1.766466128 1.124857732 1.221556691 1.401863287 0.991013315 1 15.15041279 -7.777548404 24.674891 0.995506207 1.276894066 0.147583265 0.263809786 475.4889683 728302.3562 0.261379136 0.068383425 1.67E-08 7.777548404 0.28138786 S(ph)QFFEQGSSDSVVPDLPVPTISAPSR ddPTM_HeLa_A485_30min_R1 2 SQFFEQGSSDSVVPDLPVPTISAPSR 26 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(1)QFFEQGSSDSVVPDLPVPTISAPSR;S(1)QFFEQGSSDSVVPDLPVPTISAPSR ; 176.53 1.07E-14 179830000 89430 94724 93696 100286 114579 85970 106908 97455 78202 124860 TRUE FALSE FALSE 109323.395 105801.1478 128358.0494 105764.3702 103171.1124 90471.25627 84066.23244 73554.00845 93896.42409 93734.69988 1.166306556 1.128729787 1.369376011 1.128337429 1.100671497 0.965184253 0.896852847 0.784704155 1.00172534 1 16.5162956 -6.118117022 1.686275491 0.903654892 1.209853606 0.696114818 0.084706574 0.197290263 1.120209955 0.034272761 0.034705101 7.62E-07 6.118117022 0.306198714 S(ph)QFFEQGSSDSVVPDLPVPTISAPSR ddPTM_HeLa_A486_30min_R1 2 SQFFEQGSSDSVVPDLPVPTISAPSR 26 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(1)QFFEQGSSDSVVPDLPVPTISAPSR;S(1)QFFEQGSSDSVVPDLPVPTISAPSR ; 151.31 2.62E-09 197499000 73159 85513 59763 29592 84194 82959 88900 85742 70493 71814 TRUE FALSE FALSE 68030.93189 78736.63845 82904.83411 68891.6715 73633.60344 72724.36205 66656.27971 66220.41833 76603.39 53831.30697 1.263780051 1.462655151 1.540085849 1.279769624 1.367858363 1.350967794 1.238243756 1.230146955 1.423026754 1 15.71615783 -13.17188589 0.169223176 2.79E-18 1.442051302 0.552740551 0.095613743 72.33714023 0.878375712 24.88764727 0.366829914 6.73E-14 13.17188589 1.442051302 S(ph)QGAGSSPRRPQGGSDAPSGHAAPSR ddPTM_HeLa_A485_30min_R1 2 SQGAGSSPRRPQGGSDAPSGHAAPSR 26 2 M0R0Q5;M0R398;Q96IQ9-2 M0R0Q5 ZNF414 1 0 S(0.393)QGAGS(0.302)S(0.302)PRRPQGGS(0.003)DAPSGHAAPSR;S(0.332)QGAGS(0.332)S(0.332)PRRPQGGS(0.004)DAPSGHAAPSR ; 103.68 0.00034694 144449000 17872 48535 45968 9312 81286 51560 75289 133996 34695 25780 TRUE FALSE FALSE 21847.56474 54210.74605 62973.47609 9820.690981 73192.88043 54259.60187 59202.8901 101133.2709 41657.96826 19353.52045 1.128867733 2.801079328 3.253851219 0.507436929 3.781889741 2.803603718 3.059024339 5.225574912 2.152474966 1 14.2403084 -5.810181965 24.99998973 3.207795199 2.080592745 0.134106126 1.259001312 209.3938827 107396.5135 0.377856346 0.428444588 1.55E-06 5.810181965 -1.127202454 S(ph)QGAGSSPRRPQGGSDAPSGHAAPSR ddPTM_HeLa_A486_30min_R1 1 SQGAGSSPRRPQGGSDAPSGHAAPSR 26 2 M0R0Q5;M0R398;Q96IQ9-2 M0R0Q5 ZNF414 1 0 S(0.333)QGAGS(0.333)S(0.333)PRRPQGGS(0.001)DAPSGHAAPSR 122.68 8.17E-06 49528000 11522 9184.8 12153 1662.2 28513 10122 19130 18792 10831 11442 TRUE FALSE FALSE 10714.3673 8456.962998 16858.96707 3869.685603 24936.63367 8873.250553 14343.47166 14513.47183 11769.8398 8576.848725 1.249219573 0.986022171 1.965636519 0.451178017 2.907435407 1.03455836 1.672347516 1.692168335 1.372280214 1 13.06623196 -4.730821752 24.99830938 1.537303911 1.117620594 0.05900113 0.623372839 566.1924236 462270.0738 0.147385483 0.389847154 1.86E-05 4.730821752 -0.419683316 S(ph)QGGEEEGPLSDK ddPTM_HeLa_A485_30min_R1 2 SQGGEEEGPLSDK 13 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 S(1)QGGEEEGPLSDK;S(1)QGGEEEGPLSDK ; 258.12 2.79E-41 1852110000 788040 664530 489050 1086150 793080 745440 1153760 1061940 583420 1318390 TRUE FALSE FALSE 963336.7793 742241.0029 669969.9461 1145483.624 714118.1705 784470.0857 907249.7506 801497.5499 700507.0426 989739.6362 0.973323432 0.749935615 0.676915344 1.157358544 0.721521241 0.792602476 0.916654964 0.809806459 0.70776901 1 19.91668953 S(ph)QGGEEEGPLSDK ddPTM_HeLa_A486_30min_R1 2 SQGGEEEGPLSDK 13 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 S(1)QGGEEEGPLSDK;S(1)QGGEEEGPLSDK ; 219.85 2.49E-27 2534400000 827850 857220 463480 463550 780480 1014580 1158830 1101840 632680 1225170 TRUE FALSE FALSE 769821.99 789290.7653 642951.8684 1079167.827 682584.9207 889411.4351 868878.4771 850975.085 687521.2118 918379.4575 0.838239557 0.859438611 0.700093913 1.17507836 0.743249335 0.968457458 0.946099643 0.926605096 0.748624336 1 19.80873085 S(ph)QGRLSVGS(ph)NRDR ddPTM_HeLa_A485_30min_R1 1 SQGRLSVGSNRDR 13 2 H3BLT5;H0Y781;Q2LD37-4;Q2LD37 H3BLT5 KIAA1109 Uncharacterized protein KIAA1109 2 0 S(0.501)QGRLS(0.501)VGS(0.999)NRDR 70.412 0.0069576 1657200000 0 15056 8971.1 13519 11429 0 7615.2 16245 7411 15519 TRUE FALSE FALSE 0 16816.66823 12289.88321 14257.50874 10291.08863 0 5988.15031 12260.88828 8898.319722 11650.39891 0 1.443441411 1.054889477 1.223778589 0.883325001 0 0.513986719 1.052400727 0.763778116 1 13.50809173 -6.015450014 24.83361146 0.635567184 0.985735231 0.069224346 0.44545963 1452.82363 2335199.389 0.145223974 0.149825991 9.65E-07 6.015450014 0.350168048 S(ph)QGRLSVGS(ph)NRDR ddPTM_HeLa_A486_30min_R1 2 SQGRLSVGSNRDR 13 2 H3BLT5;H0Y781;Q2LD37-4;Q2LD37 H3BLT5 KIAA1109 Uncharacterized protein KIAA1109 2 0 S(0.532)QGRLS(0.532)VGS(0.937)NRDR;S(0.505)QGRLS(0.505)VGS(0.989)NRDR ; 63.76 0.013721 3571600000 13923 26149 17036 43918 0 27096 13413 14124 21216 15727 TRUE FALSE FALSE 12947.0696 24076.85801 23632.79544 102243.3235 0 23753.17101 10056.92553 10908.27352 23055.01996 11788.85683 1.098246402 2.042340351 2.004672359 8.672878544 0 2.014883321 0.853087426 0.925303757 1.955662053 1 13.52513621 S(ph)QKFNYR ddPTM_HeLa_A485_30min_R1 1 SQKFNYR 7 1 F8VUJ3;Q8N4A0 F8VUJ3 POC1B-GALNT4;GALNT4 Polypeptide N-acetylgalactosaminyltransferase;Polypeptide N-acetylgalactosaminyltransferase 4 1 0 S(1)QKFNYR 72.234 0.0093459 878800000 235250 399920 393190 242220 458780 366160 432200 507110 338710 358090 TRUE FALSE FALSE 287580.5509 446687.1652 538647.343 255451.8653 413102.2523 385331.5714 339856.9393 382740.4774 406685.9902 268824.7532 1.069769608 1.661629593 2.003711848 0.950254254 1.536697226 1.433393193 1.264232312 1.423754594 1.512829401 1 18.03630646 -12.12102521 0.308110663 1.88E-12 1.462561054 0.166187286 0.281994843 145.0702749 3.836046223 94.36734564 0.276507113 7.57E-13 12.12102521 1.462561054 S(ph)QKFNYR ddPTM_HeLa_A486_30min_R1 2 SQKFNYR 7 1 F8VUJ3;Q8N4A0 F8VUJ3 POC1B-GALNT4;GALNT4 Polypeptide N-acetylgalactosaminyltransferase;Polypeptide N-acetylgalactosaminyltransferase 4 1 0 S(1)QKFNYR;S(1)QKFNYR ; 72.234 0.0093459 1016180000 496240 663020 625030 170453 930340 606590 723400 754760 573620 586250 TRUE FALSE FALSE 461456.1386 610479.8805 867058.3549 396823.1982 813648.0821 531755.0932 542397.6687 582917.6243 623341.8435 439449.1842 1.050078497 1.389193341 1.97305715 0.903001331 1.851518017 1.210049108 1.234267097 1.326473334 1.418461715 1 18.74533682 S(ph)QLDSLKR ddPTM_HeLa_A485_30min_R1 3 SQLDSLKR 8 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 S(1)QLDSLKR;S(1)QLDSLKR;S(1)QLDSLKR ;; 81.625 0.0046556 312300000 342395 304562 259625 467200 432990 338181 473473 392906 314227 657470 TRUE FALSE FALSE 418559.5865 340177.8766 355671.0914 492721.953 389879.9953 355887.6342 372311.6256 296545.1874 377289.4766 493574.8288 0.848016475 0.689212368 0.720602167 0.998272043 0.789910612 0.721040891 0.754316476 0.600811002 0.764401778 1 18.9129093 -6.014370851 24.53931555 0.743766066 0.810394115 0.011256486 0.121081264 1691.120467 2887718.222 0.03911774 0.040603919 9.67E-07 6.014370851 0.066628049 S(ph)QLDSLKR ddPTM_HeLa_A486_30min_R1 4 SQLDSLKR 8 1 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 S(1)QLDSLKR;S(1)QLDSLKR;S(1)QLDSLKR;S(1)QLDSLKR ;;; 78.683 0.0059735 517292000 435003 530190 274240 219995 502827 574270 652120 626050 407878 610760 TRUE FALSE FALSE 404511.5361 488175.8135 380433.0724 512159.4779 439757.749 503422.4061 488952.6786 483512.0816 443233.1934 457821.7206 0.883556891 1.06630112 0.830963354 1.118687591 0.960543655 1.099603587 1.067997993 1.056114334 0.968134917 1 18.80442639 -5.273194671 24.97082372 1.041562738 0.940876514 0.317606565 0.074167741 889.1635694 1888777.257 0.019599345 0.029342491 5.33E-06 5.273194671 -0.100686224 S(ph)QLPAEGDAGAEWAAAVLK ddPTM_HeLa_A485_30min_R1 1 SQLPAEGDAGAEWAAAVLK 19 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(1)QLPAEGDAGAEWAAAVLK 70.837 0.0016663 0 13551 12292 11485 12790 16222 13677 16443 15769 10310 17176 TRUE FALSE FALSE 16565.3732 13729.44247 15733.77943 13488.68531 14606.88072 14393.10657 12929.81872 11901.62803 12379.12243 12894.3393 1.284701202 1.0647651 1.220208268 1.046093561 1.132813429 1.116234515 1.00275155 0.923011854 0.960043174 1 13.65445023 -6.798213059 2.603988426 0.955483315 1.142631122 0.620266875 0.066996802 0.180165405 2.49211523 0.029942735 0.019567152 1.59E-07 6.798213059 0.187147806 S(ph)QNRLLATLYENYAGSCSTEPPKSGVK ddPTM_HeLa_A485_30min_R1 1 SQNRLLATLYENYAGSCSTEPPKSGVK 27 2 A0A6E1W127;A7E2Y1 A0A6E1W127 MYH7B Myosin-7B 1 0 S(0.465)QNRLLAT(0.465)LY(0.002)ENY(0.002)AGS(0.016)CS(0.017)T(0.017)EPPKS(0.017)GVK 41.209 0.027881 193160000 106490 70124 61259 199310 104690 100430 177870 125350 79280 250090 TRUE FALSE FALSE 130178.3331 78324.3918 83921.2533 210197.8006 94266.69601 105688.3595 139866.6214 94607.71596 95190.7688 187747.1656 0.693370431 0.417180156 0.446990787 1.119579089 0.502093844 0.562929188 0.744973278 0.503910222 0.507015744 1 17.5184316 -11.04820613 2.409601619 1.507797625 0.611523083 0.261752594 0.196037586 24981720.48 8866224.296 69874040.74 0.052293314 8.95E-12 11.04820613 -0.896274542 S(ph)QPKAPPVDDAEVDELVLQTK ddPTM_HeLa_A485_30min_R1 2 SQPKAPPVDDAEVDELVLQTK 21 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 S(1)QPKAPPVDDAEVDELVLQTK;S(1)QPKAPPVDDAEVDELVLQTK ; 210.56 3.05E-27 146171000 100676 81379 60382 126726 130773 103825 157452 162063 89262 203220 TRUE FALSE FALSE 123071.0289 90895.56615 82719.8145 133648.7205 117752.7809 109261.1165 123811.0939 122316.7951 107176.0646 152560.994 0.806700492 0.595798204 0.542208151 0.876034673 0.771840677 0.716179894 0.811551437 0.801756674 0.702512889 1 17.21902662 -13.99999999 0.130359383 1.878589974 0.625921367 0.415569146 0.095894784 144.9097689 1.188836187 33.30502626 0.751283676 1.00E-14 13.99999999 -1.252668607 S(ph)QPKAPPVDDAEVDELVLQTK ddPTM_HeLa_A486_30min_R1 2 SQPKAPPVDDAEVDELVLQTK 21 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 S(1)QPKAPPVDDAEVDELVLQTK;S(1)QPKAPPVDDAEVDELVLQTK ; 172.18 3.47E-14 122167000 134308 102826 48868 64338 103150 126648 184691 166068 93945 201579 TRUE FALSE FALSE 124893.7028 94677.69327 67790.99833 149782.1155 90211.96516 111023.4574 138479.3583 128257.9416 102088.2282 151102.3063 0.826550605 0.626580067 0.448643042 0.991262934 0.597025733 0.734756868 0.916460918 0.848815248 0.67562323 1 17.20516616 -11.44868473 0.114685698 1.478998093 0.55921201 0.227350727 0.151359685 109.6595246 1.562548307 15.62315022 2.04156206 3.56E-12 11.44868473 -0.919786083 S(ph)QRLGNSFVPEK ddPTM_HeLa_A486_30min_R1 1 SQRLGNSFVPEK 12 1 H3BN21;Q9P2P6 H3BN21 STARD9 StAR-related lipid transfer protein 9 1 0 S(0.5)QRLGNS(0.5)FVPEK 45.864 0.030914 215750000 205510 412340 581580 10958 537810 193410 90314 176670 289660 35176 TRUE FALSE FALSE 191104.8103 379664.6767 806783.3513 25510.77779 470352.8549 169549.0406 67716.48196 136446.0977 314767.962 26367.70064 7.247685828 14.39885418 30.59741015 0.96750104 17.83822038 6.430179216 2.568160299 5.174743886 11.93763409 1 14.68648415 -6.347281642 6.324325523 5.413945226 14.38044981 0.251228208 7.592511445 0.361676418 21.96144798 2.687335616 2.36544472 4.49E-07 6.347281642 8.966504586 S(ph)QS(ph)IEQESQEK ddPTM_HeLa_A486_30min_R1 2 SQSIEQESQEK 11 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 S(1)QS(1)IEQESQEK;S(1)QS(1)IEQESQEK ; 89.911 0.0058531 900236000 2022420 2164380 1081200 1580580 1955630 2829260 3802990 3287390 1752400 4590970 TRUE FALSE FALSE 1880658.802 1992866.646 1499869.596 3679670.118 1710336.65 2480214.667 2851441.678 2538923.06 1904299.443 3441361.23 0.546486892 0.579092549 0.43583614 1.069248438 0.496994223 0.720707447 0.82857959 0.73776709 0.553356453 1 21.7145479 -14 0.045437236 2.221880629 4.14E-11 0.25680536 0.175686854 977.249692 3.292283679 156.6397816 40.00837599 1.00E-14 14 -2.221880629 S(ph)QS(ph)KS(ph)PTGT(ph)PAR ddPTM_HeLa_A485_30min_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 4 0 S(1)QS(1)KS(0.986)PT(0.016)GT(0.998)PAR 99.915 0.030725 272440000 394940 448600 374270 816220 529590 373170 620660 539990 351220 1028600 TRUE FALSE FALSE 482793.0405 501059.8677 512728.0477 860808.0318 476862.1601 392708.6042 488050.9207 407556.6058 421706.6324 772188.95 0.625226559 0.648882463 0.663992987 1.114763468 0.617545952 0.508565428 0.632035619 0.527793885 0.54611845 1 19.55859438 -10.43613104 5.643194554 1.000224978 0.657892772 0.289754054 0.162459424 0.000493652 4.93E-05 0.168865105 0.040929241 3.66E-11 10.43613104 -0.342332206 S(ph)QS(ph)KS(ph)PTGT(ph)PAR ddPTM_HeLa_A486_30min_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 4 0 S(1)QS(1)KS(1)PT(0.089)GT(0.911)PAR 163.34 7.58E-09 281060000 638460 509400 236990 646920 388820 722010 849630 636700 428050 1620200 TRUE FALSE FALSE 593707.251 469033.2888 328758.8748 1506062.454 340050.57 632935.7471 637043.5875 491737.3091 465153.7186 1214491.374 0.488852588 0.386197299 0.270696756 1.240076698 0.279994224 0.521152937 0.524535292 0.404891562 0.3830029 1 20.21192081 -10.19397778 4.705034977 1.000070041 0.503698398 0.247011616 0.261855353 257399415.2 33.16639036 223234.3498 0.064527453 6.40E-11 10.19397778 -0.496371643 S(ph)QS(ph)KS(ph)PTGTPAR ddPTM_HeLa_A485_30min_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(1)QS(0.994)KS(0.5)PT(0.5)GT(0.006)PAR 112.24 0.0035022 161700000 443270 390570 269800 808900 466620 358430 629850 504800 299380 990350 TRUE FALSE FALSE 541873.8822 436243.764 369610.2473 853088.1588 420161.6744 377196.8406 495277.4021 380997.0085 359462.8199 743473.971 0.728840421 0.586764004 0.497139458 1.147435138 0.565132998 0.507343707 0.666166431 0.512455074 0.483490793 1 19.50392271 -10.14006443 5.599732598 1.000005594 0.634315908 0.255936558 0.187836562 1.33E-05 2.05E-06 0.184975358 0.044862428 7.24E-11 10.14006443 -0.365689685 S(ph)QS(ph)KS(ph)PTGTPAR ddPTM_HeLa_A486_30min_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(1)QS(1)KS(0.996)PT(0.004)GTPAR 175.27 1.35E-10 0 723130 563680 196930 550180 343270 727570 875370 699470 448090 1773100 TRUE FALSE FALSE 672442.3212 519011.9439 273186.57 1280846.845 300213.8757 637809.8108 656343.1673 540215.9503 486930.802 1329104.219 0.505936488 0.390497552 0.205541873 0.963691805 0.225876851 0.479879457 0.493823703 0.406451159 0.366360136 1 20.3420228 -10.3678488 5.056567503 1.000350198 0.449409984 0.410877938 0.198049018 0.000746958 9.34E-05 0.183194039 0.044403588 4.29E-11 10.3678488 -0.550940213 S(ph)QS(ph)PHYFR ddPTM_HeLa_A486_30min_R1 1 SQSPHYFR 8 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 0 S(1)QS(0.994)PHY(0.006)FR 75.479 0.02629 499800000 528530 574400 423320 208990 565240 567910 577850 586000 453430 637640 TRUE FALSE FALSE 491482.7763 528882.4521 587240.8409 486539.2818 494342.3285 497847.0383 433265.8181 452580.5923 492733.6775 477970.7937 1.028269473 1.106516254 1.228612394 1.017926803 1.034252166 1.041584643 0.906469232 0.946879178 1.030886581 1 18.86656294 -5.855487631 1.465016866 0.975202733 1.114776249 0.436403825 0.062134453 0.366108719 1.63405376 0.025018567 0.031691696 1.39E-06 5.855487631 0.139573516 S(ph)QS(ph)PKKDIAR ddPTM_HeLa_A485_30min_R1 2 SQSPKKDIAR 10 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 S(1)QS(1)PKKDIAR;S(1)QS(1)PKKDIAR ; 100.4 0.0010579 2605220000 3205220 2352540 1209100 6986020 4311290 3699570 8320020 8236990 2438220 10661560 TRUE FALSE FALSE 3918210.131 2627649.089 1656396.405 7367648.583 3882042.83 3893273.765 6542379.759 6216855.287 2927548.389 8003829.303 0.489541941 0.328298992 0.206950491 0.920515456 0.485023191 0.486426386 0.817406208 0.776735117 0.365768469 1 22.93225897 -8.65691183 0.095206439 1.526828491 1.92E-14 0.334887183 0.209708061 33.89072126 1.289182295 12.47286206 7.437463118 2.20E-09 8.65691183 -1.526828491 S(ph)QS(ph)PKKDIAR ddPTM_HeLa_A486_30min_R1 1 SQSPKKDIAR 10 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 S(1)QS(1)PKKDIAR 88.561 0.0022433 385200000 759200 568090 284940 790980 645050 943260 1448900 1335100 527710 1792400 TRUE FALSE FALSE 705984.0005 523072.4795 395276.399 1841441.414 564141.8141 826890.1716 1086369.895 1031126.875 573452.3277 1343571.373 0.525453291 0.389314993 0.294198289 1.370557196 0.419882282 0.615441939 0.808568801 0.767452251 0.426811957 1 20.35764153 S(ph)QS(ph)PPKDR ddPTM_HeLa_A485_30min_R1 1 SQSPPKDR 8 1 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 2 0 S(1)QS(1)PPKDR 68.069 0.020118 318180000 312690 278070 138090 797940 237410 285290 384340 461960 256770 950490 TRUE FALSE FALSE 382246.8117 310587.8676 189175.2374 841529.4417 213772.6268 300227.3433 302222.6192 348663.5857 308301.3838 713550.3355 0.535697053 0.43527114 0.26511828 1.179355401 0.299590115 0.420751457 0.423547722 0.488632081 0.432066763 1 19.44465568 -10.59424189 3.195572138 1.025324051 0.498598712 0.281580334 0.240655885 348911911 387135111.9 74172921.75 0.061283492 2.55E-11 10.59424189 -0.526725339 S(ph)QS(ph)RS(ph)NSPLPVPPSK ddPTM_HeLa_A486_30min_R1 1 SQSRSNSPLPVPPSK 15 1 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 3 0 S(0.996)QS(0.996)RS(0.631)NS(0.377)PLPVPPS(0.001)K 87.138 0.013253 173050000 315740 289390 161090 188460 329550 371160 487800 430220 274740 492000 TRUE FALSE FALSE 293608.2565 266457.6825 223468.3621 438744.4042 288214.7661 325370.0529 365747.2806 332268.2976 298554.6844 368799.9976 0.796117837 0.722499144 0.605933741 1.189654032 0.781493405 0.882239845 0.991722568 0.900944414 0.809530061 1 18.49247912 -5.228449661 24.99989873 0.925964822 0.709615133 0.446576132 0.116061564 616.7576021 467383.6517 0.030588316 0.052975824 5.91E-06 5.228449661 -0.216349689 S(ph)QS(ph)RSNS(ph)PLPVPPSK ddPTM_HeLa_A485_30min_R1 1 SQSRSNSPLPVPPSK 15 1 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 3 0 S(1)QS(0.999)RS(0.354)NS(0.647)PLPVPPS(0.001)K 114.96 0.0015253 158010000 131720 142490 100600 208620 196300 163570 266160 277720 145580 313920 TRUE FALSE FALSE 161020.6596 159152.966 137816.1263 220016.3823 176755.6827 172134.2723 209292.7417 209608.7346 174796.5707 235665.5213 0.683259302 0.675334114 0.584795457 0.933595976 0.750027759 0.730417718 0.888092329 0.889433182 0.741714654 1 17.84638118 -2.516750518 0.090075286 1.144934189 5.66E-11 0.487284179 0.09009174 98.44048484 0.884223994 1.985759937 14.1996212 0.003042632 2.516750518 -1.144934188 S(ph)QSAAVTPSSTTSSTR ddPTM_HeLa_A485_30min_R1 1 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 S(1)QSAAVTPSSTTSSTR 150.39 5.05E-08 108740000 57496 65551 66390 62319 83717 69025 75379 91048 58580 82865 TRUE FALSE FALSE 70285.78684 73216.61923 90950.42372 65723.32917 75381.84153 72639.04227 59273.66086 68718.33524 70336.46867 62208.28052 1.12984616 1.176959379 1.462030826 1.056504514 1.211765394 1.167674812 0.9528259 1.104649328 1.130660872 1 15.92481901 -6.574049874 8.272864407 1.055799988 1.20938166 0.331693487 0.107843929 0.336698198 48.69524674 0.041617382 0.032227009 2.67E-07 6.574049874 0.153581672 S(ph)QSAAVTPSSTTSSTR ddPTM_HeLa_A486_30min_R1 1 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 S(0.939)QS(0.061)AAVTPSSTTSSTR 224.09 6.71E-34 97626000 79089 88581 60444 32134 93379 73765 99897 99808 79672 94851 TRUE FALSE FALSE 73545.26952 81561.51895 83849.53555 74809.57596 81666.5351 64664.62429 74901.714 77083.89719 86578.03311 71099.69222 1.034396454 1.147143066 1.179323467 1.052178619 1.148620093 0.909492324 1.053474518 1.084166398 1.217699126 1 16.11755569 S(ph)QSFTHSPSGDPK ddPTM_HeLa_A485_30min_R1 2 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.744)QS(0.248)FT(0.008)HSPSGDPK;S(0.553)QS(0.436)FT(0.011)HSPSGDPK ; 127.22 1.97E-05 807060000 834320 868100 652470 971380 1112930 1161410 1603310 1599340 1110130 1914410 TRUE FALSE FALSE 1019911.606 969616.7435 893845.8045 1024444.03 1002122.781 1222219.632 1260749.721 1207099.357 1332922.908 1437182.819 0.70966031 0.674664859 0.621943007 0.712813997 0.697282745 0.850427389 0.877236844 0.839906615 0.92745536 1 20.45481216 -6.67693507 0.613489107 0.970402607 0.652153664 0.884699591 0.040074796 0.265340615 0.205431584 0.0373623 0.028898455 2.10E-07 6.67693507 -0.318248943 S(ph)QSFTHSPSGDPK ddPTM_HeLa_A486_30min_R1 2 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.934)QS(0.065)FT(0.001)HSPSGDPK;S(0.478)QS(0.478)FT(0.044)HS(0.001)PSGDPK ; 147.92 5.53E-08 504310000 1440850 1341520 723240 287186 1301120 1437550 1738740 1724220 1248760 1678220 TRUE FALSE FALSE 1339853.856 1235213.069 1003297.897 668583.5216 1137921.397 1260199.697 1303688.861 1331652.745 1357003.522 1257982.789 1.06508123 0.981899817 0.797545011 0.53147271 0.904560386 1.001762272 1.036332828 1.058561975 1.078713902 1 20.26268075 -6.237381673 3.625933687 1.042037912 0.838267786 0.319616942 0.131854069 0.30840757 8.784029706 0.051839246 0.049334064 5.79E-07 6.237381673 -0.203770125 S(ph)QSKSPTGTPAR ddPTM_HeLa_A486_30min_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 S(0.331)QS(0.331)KS(0.331)PT(0.003)GT(0.004)PAR 48.823 0.026626 48137000 85661 62360 41556 29058 75618 67940 76226 77234 64263 107070 TRUE FALSE FALSE 79656.60625 57418.36649 57647.59611 67648.49251 66133.28533 59558.25356 57153.44856 59649.50421 69833.36858 80258.97509 0.992494686 0.715413652 0.718269777 0.842877603 0.823998628 0.74207593 0.712112863 0.743212882 0.870100428 1 16.29237511 -8.036566136 4.181864678 0.999795056 0.781397004 0.395835787 0.081500936 0.207601735 10.91899742 0.077705268 0.020379884 9.19E-09 8.036566136 -0.218398052 S(ph)QSPINCIRPSVLGPLK ddPTM_HeLa_A485_30min_R1 1 SQSPINCIRPSVLGPLK 17 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 S(0.543)QS(0.457)PINCIRPSVLGPLK 55.383 0.017409 703680000 60892 79464 74292 73264 91552 70614 92312 93808 69689 81458 TRUE FALSE FALSE 74437.21533 88756.62356 101775.7023 77266.22681 82436.76142 74311.23985 72588.78708 70801.44091 83674.94307 61152.01972 1.217248681 1.451409519 1.664306474 1.263510627 1.348062775 1.215188643 1.187021907 1.15779399 1.368310376 1 15.90011253 -5.944982014 1.537552326 1.192424789 1.433952855 0.360177926 0.138397537 0.436034099 2.119328462 0.054451907 0.063435888 1.14E-06 5.944982014 0.241528065 S(ph)QSPLMTHPQILPATQDILK ddPTM_HeLa_A486_30min_R1 1 SQSPLMTHPQILPATQDILK 20 0 Q03112-8;Q03112;Q03112-3;E7EUL6;A0A0C3SFZ7;Q03112-5;Q03112-6;Q03112-1;Q03112-4 Q03112-8 MECOM MDS1 and EVI1 complex locus protein EVI1 1 0 S(0.553)QS(0.414)PLMT(0.033)HPQILPATQDILK 94.08 0.00032954 181760000 97968 98675 67580 35315 88104 102110 109050 104390 79261 124170 TRUE FALSE FALSE 91100.94911 90855.63363 93748.78586 82215.10472 77053.17478 89512.70638 81764.53659 80622.67582 86131.4073 93077.02379 0.978769469 0.976133851 1.007217271 0.883301822 0.827843131 0.961705722 0.878461013 0.8661931 0.925377755 1 16.50613746 -5.263763083 24.80332239 0.898452106 0.986249564 0.37625177 0.047213724 171.7086463 1832833.645 0.01266065 0.019848283 5.45E-06 5.263763083 0.087797458 S(ph)QSREEQAVLLVR ddPTM_HeLa_A485_30min_R1 2 SQSREEQAVLLVR 13 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 S(0.965)QS(0.035)REEQAVLLVR;S(0.997)QS(0.003)REEQAVLLVR ; 202.34 8.08E-22 68682000 26035 33628 38836 28517 59021 37725 50503 64496 37652 43085 TRUE FALSE FALSE 31826.39593 37560.50208 53203.0525 30074.8115 53144.662 39700.22267 39712.62148 48678.25487 45208.41104 32344.70242 0.983975537 1.16125669 1.644876858 0.929821864 1.643071601 1.227410355 1.227793688 1.504983853 1.397706816 1 14.98124182 -4.527617548 24.80132438 1.335540345 1.028295693 0.175415794 0.229194425 148.1013412 775118.2125 0.054017258 0.144129728 2.97E-05 4.527617548 -0.307244652 S(ph)QSREEQAVLLVR ddPTM_HeLa_A486_30min_R1 1 SQSREEQAVLLVR 13 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 S(0.998)QS(0.002)REEQAVLLVR 127.75 1.26E-05 23583000 17958 19549 21432 9638.5 29023 20339 24977 26802 17469 19443 TRUE FALSE FALSE 16699.23694 17999.86604 29731.04437 22438.9151 25382.66471 17829.78097 18727.49042 20699.76968 18983.22699 14574.34625 1.145796638 1.23503763 2.039957324 1.539617265 1.741598853 1.223367462 1.284962639 1.420288041 1.302509674 1 13.83114355 -6.280916534 24.6662125 1.274914612 1.551146418 0.2485798 0.252943757 1160.146063 1469224.341 0.09340434 0.082500155 5.24E-07 6.280916534 0.276231806 S(ph)QSSGSSATHPISVPGAR ddPTM_HeLa_A485_30min_R1 1 SQSSGSSATHPISVPGAR 18 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.947)QS(0.043)S(0.005)GS(0.005)SATHPISVPGAR 173.87 1.51E-12 166400000 85887 120990 118900 76737 158400 105340 136140 140400 111100 119350 TRUE FALSE FALSE 104992.2668 135138.728 162886.0578 80928.948 142629.1398 110855.4395 107052.5768 105966.6799 133396.7509 89598.24147 1.171811691 1.508274334 1.817960433 0.903242593 1.591874321 1.23725017 1.194806673 1.18268705 1.488832244 1 16.4511828 -5.960422128 0.899325668 1.226668867 1.441473291 0.088475081 0.256927073 1.52374689 2.699032807 0.137822355 0.176526891 1.10E-06 5.960422128 0.214804423 S(ph)QSTTFNPDDMSEPEFK ddPTM_HeLa_A485_30min_R1 1 SQSTTFNPDDMSEPEFK 17 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.43)QS(0.43)T(0.07)T(0.07)FNPDDMSEPEFK 106.36 8.13E-05 0 21627 21118 18987 28582 27325 25750 39726 45755 26555 39035 TRUE FALSE FALSE 26437.85154 23587.5664 26011.08141 30143.36229 24604.42706 27098.23018 31238.21557 34533.51451 31884.34492 29304.29289 0.902183569 0.804918463 0.887620169 1.028632986 0.839618521 0.924718787 1.065994518 1.178445583 1.088043484 1 14.83882441 -6.771189748 3.622711194 1.103446191 0.894024189 0.642678976 0.067783051 0.138320786 3.870773892 0.029599448 0.020475644 1.69E-07 6.771189748 -0.209422002 S(ph)QSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR ddPTM_HeLa_A485_30min_R1 1 SQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR 36 0 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 0 S(0.494)QS(0.494)VPAS(0.005)T(0.005)GLGWGSGLVAPLQEGSIDSTLAGTQDTR 45.192 0.029285 53576000 2888.7 1712.2 2062.3 3971.3 2466.6 4512.6 5435.2 4148.3 3878.3 4709.8 TRUE FALSE FALSE 3531.281349 1912.426896 2825.230589 4188.242063 2221.016643 4748.872758 4273.925118 3130.922921 4656.639236 3535.733537 0.998740802 0.54088547 0.799050765 1.184546861 0.628162903 1.343108214 1.20878032 0.885508732 1.317022108 1 11.78779384 -5.702830767 1.051198692 1.127023684 0.765440852 0.255595537 0.227868573 0.705231343 1.651911873 0.098001534 0.160305285 1.98E-06 5.702830767 -0.361582833 S(ph)QSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR ddPTM_HeLa_A486_30min_R1 2 SQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR 36 0 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 0 S(0.498)QS(0.498)VPAS(0.002)T(0.002)GLGWGSGLVAPLQEGSIDSTLAGTQDTR;S(0.496)QS(0.496)VPAS(0.004)T(0.004)GLGWGSGLVAPLQEGSIDSTLAGTQDTR ; 83.59 0.00014435 100833000 43876 43055 20788.3 37397 41520 52091 76771 69574 37497 82321 TRUE FALSE FALSE 40800.51898 39643.165 28838.08649 87062.10594 36312.17444 45664.54204 57562.0838 53733.51899 40747.27015 61707.28578 0.661194516 0.642438968 0.467336816 1.410888598 0.588458461 0.740018646 0.932824756 0.870780789 0.66033159 1 15.91315322 S(ph)QSWDDRGER ddPTM_HeLa_A486_30min_R1 1 SQSWDDRGER 10 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.5)QS(0.5)WDDRGER 69.345 0.0032567 0 340140 356650 367520 122910 428990 332490 424990 457260 359030 324110 TRUE FALSE FALSE 316297.9425 328387.7551 509833.5865 286140.6915 375182.074 291470.7643 318653.0069 353151.8799 390151.0095 242950.7464 1.301901505 1.351663907 2.098505949 1.177772432 1.54427216 1.199711335 1.311595093 1.453594546 1.605885206 1 17.89030434 S(ph)QSWEERGDR ddPTM_HeLa_A486_30min_R1 1 SQSWEERGDR 10 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 S(0.599)QS(0.401)WEERGDR 53.377 0.020796 143620000 141290 180080 226070 46382 247180 144410 156680 193010 168680 102120 TRUE FALSE FALSE 131386.3006 165809.805 313610.3584 107979.64 216176.3795 126594.1625 117477.0068 149065.8364 183301.3182 76548.48731 1.716380104 2.166075527 4.096885117 1.410604491 2.824045087 1.653777454 1.534674439 1.94733876 2.394577929 1 16.22408625 -6.275287974 24.30757946 1.754569885 2.46197423 0.192703938 0.750168854 1011.352835 1775159.001 0.261739939 0.232080108 5.31E-07 6.275287974 0.707404345 S(ph)QT(ph)PPRR ddPTM_HeLa_A485_30min_R1 3 SQTPPRR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)QT(1)PPRR;S(1)QT(1)PPRR;S(1)QT(1)PPRR ;; 68.893 0.016953 1429225000 189808 187485 111568 409173 153653 150664 223506 231091 170874 485894 TRUE FALSE FALSE 232030.1348 209409.7398 152841.6459 431525.0849 138354.7678 158552.5341 175752.1172 174415.5699 205166.8445 364769.568 0.636100583 0.574087748 0.419008764 1.183007363 0.379293614 0.434664917 0.481816831 0.478152744 0.562456034 1 18.47662585 -10.0422775 5.035737931 1.000004829 0.570464641 0.258014735 0.217692595 294283653.3 25.01358493 22039.53705 0.052954099 9.07E-11 10.0422775 -0.429540189 S(ph)QT(ph)PPRR ddPTM_HeLa_A486_30min_R1 2 SQTPPRR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)QT(1)PPRR;S(1)QT(1)PPRR ; 66.92 0.018611 1217535000 143566 94025 87920 98807 86801 218705 184396 134465 173724 302380 TRUE FALSE FALSE 133502.7648 86574.11657 121964.9786 230027.6894 75913.60919 191723.4007 138258.1705 103850.2549 188782.5362 226662.0798 0.588994705 0.381952361 0.538091677 1.014848578 0.334919759 0.845855649 0.60997486 0.458172161 0.832880984 1 17.79018353 -14 0.159045496 2.423034951 0.512585336 0.270266872 0.200715114 186.2986241 1.706336744 83.51198801 0.858247952 1.00E-14 14 -1.910449616 S(ph)QTNDNYEGDLTSGVYLLSR ddPTM_HeLa_A485_30min_R1 2 SQTNDNYEGDLTSGVYLLSR 20 0 A0A1B0GV68 A0A1B0GV68 1 0 S(0.5)QT(0.5)NDNYEGDLTSGVYLLSR;S(0.811)QT(0.189)NDNYEGDLTSGVYLLSR ; 264.03 6.41E-59 73729000 28499 28728 22983.4 30422 23713.4 31363 39633 37892 28317 59317 TRUE FALSE FALSE 34838.50423 32087.4897 31485.91608 32083.87683 21352.41063 33005.11818 31165.08578 28598.92759 33999.96216 44530.36355 0.782353914 0.720575516 0.707066226 0.720494383 0.479502275 0.74118232 0.699861472 0.642234316 0.763523121 1 15.44250177 -8.107879224 4.415754316 0.999967093 0.685414039 0.596770938 0.077451777 0.428637814 16.21245041 0.075784236 0.019824925 7.80E-09 8.107879224 -0.314553054 S(ph)QTNDNYEGDLTSGVYLLSR ddPTM_HeLa_A486_30min_R1 4 SQTNDNYEGDLTSGVYLLSR 20 0 A0A1B0GV68 A0A1B0GV68 1 0 S(0.5)QT(0.5)NDNYEGDLTSGVYLLSR;S(0.492)QT(0.492)NDNY(0.015)EGDLTSGVYLLSR;S(0.803)QT(0.197)NDNYEGDLTSGVYLLSR;S(0.5)QT(0.5)NDNYEGDLTSGVYLLSR ;;; 196.76 7.59E-21 164695000 82145 93233 60194 38279.2 91675 87914 84656 81645 87258 101646 TRUE FALSE FALSE 76387.0597 85844.87753 83502.72885 89115.91212 80176.26666 77068.06452 63474.1734 63056.2158 94821.5937 76193.18 1.002544581 1.126674035 1.095934424 1.16960484 1.052276157 1.011482452 0.833068962 0.827583464 1.244489254 1 16.21737425 -6.259153104 2.999819748 0.959564581 1.099868994 0.171268829 0.115520937 0.401150976 7.347409839 0.042504229 0.039575442 5.51E-07 6.259153104 0.140304414 S(ph)QTPERPAK ddPTM_HeLa_A486_30min_R1 1 SQTPERPAK 9 1 A8CG34-2;A8CG34;Q96HA1-2;Q96HA1-3;Q96HA1;C9JFL1;A6NF01 A8CG34-2 POM121C;POM121;POM121B Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B 1 0 S(0.598)QT(0.402)PERPAK 58.674 0.016715 390790000 477530 441310 262330 178850 414280 476310 508880 439240 397610 547030 TRUE FALSE FALSE 444057.613 406338.9884 363911.2014 416371.8386 362317.1394 417547.715 381552.8416 339234.6405 432075.1549 410050.1274 1.082934947 0.990949548 0.887479791 1.015416923 0.88359231 1.018284563 0.930502922 0.827300415 1.053713012 1 18.64544076 -4.362244577 3.417820962 0.946896438 1.087659159 0.247485103 0.068131161 0.327724036 6.206711211 0.01627376 0.099946062 4.34E-05 4.362244577 0.140762721 S(ph)QTPPGVAT(ph)PPIPK ddPTM_HeLa_A486_30min_R1 1 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 S(0.5)QT(0.5)PPGVAT(1)PPIPK 118.21 0.00031979 66785000 189050 205710 95253 78511 181940 206080 255850 226600 144380 280960 TRUE FALSE FALSE 175798.5713 189408.7904 132137.5126 182777.5757 159119.3887 180655.9449 191833.6239 175008.1266 156894.9746 210605.7873 0.834728112 0.899352258 0.627416342 0.867865874 0.755531891 0.857791931 0.910865871 0.830974917 0.744969911 1 17.68418556 -6.3518614 8.798590635 0.861233735 0.797234832 0.131471706 0.091410478 0.897119741 80.81311782 0.031732454 0.027960822 4.45E-07 6.3518614 -0.063998903 S(ph)QTPPGVATPPIPK ddPTM_HeLa_A485_30min_R1 1 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 S(0.648)QT(0.351)PPGVAT(0.001)PPIPK 95.428 0.0010211 955400000 587730 576900 444360 873600 763370 703680 1044500 1143500 548110 997400 TRUE FALSE FALSE 718468.5109 644363.4366 608747.2554 921322.5559 687366.2024 740523.5967 821334.0422 863054.8321 658110.6494 748766.5358 0.959536086 0.860566553 0.813000082 1.230453702 0.917998027 0.988991309 1.096916065 1.152635422 0.878926365 1 19.51415643 -5.225138375 24.99654855 1.039762742 0.875987459 0.332175493 0.104119751 667.1576625 459398.2322 0.027554306 0.047723464 5.95E-06 5.225138375 -0.163775283 S(ph)QTTTERDSDTDVEEEELPVENR ddPTM_HeLa_A486_30min_R1 1 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.247)QT(0.247)T(0.199)T(0.199)ERDS(0.107)DT(0.001)DVEEEELPVENR 78.921 4.37E-05 0 54781 82831 106330 14073 110090 49501 53851 65622 72034 31418 TRUE FALSE FALSE 50941.13479 76267.16989 147503.8236 32762.65521 96281.48565 43394.06991 40376.91022 50681.30312 78277.96512 23550.7283 2.163038617 3.238420864 6.263238305 1.391152528 4.08825937 1.842578682 1.71446546 2.152005767 3.323802309 1 14.52348406 -6.271979546 24.69240659 2.060314168 3.462507825 0.226907192 1.310003845 982.1173471 2300795.762 0.456182639 0.406578404 5.35E-07 6.271979546 1.402193656 S(ph)QVIAEK ddPTM_HeLa_A485_30min_R1 1 SQVIAEK 7 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 S(1)QVIAEK 76.655 0.011622 0 175540 125740 107230 204840 180060 144140 214790 186880 123740 257700 TRUE FALSE FALSE 214588.2674 140444.1992 146898.8392 216029.8905 162132.5942 151686.9475 168898.3618 141047.387 148573.483 193460.1326 1.109211828 0.725959387 0.759323573 1.116663612 0.838067213 0.784073418 0.873039626 0.729077278 0.767979847 1 17.56167677 -5.979313606 24.98537465 0.815931468 0.910843034 0.095759399 0.136694151 597.836804 722073.7799 0.042287981 0.047945279 1.05E-06 5.979313606 0.094911566 S(ph)QVIAEK ddPTM_HeLa_A486_30min_R1 1 SQVIAEK 7 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 S(1)QVIAEK 94.767 0.0043655 0 197890 243020 147630 119070 229990 254070 298000 298520 196630 253840 TRUE FALSE FALSE 184018.9329 223762.2101 204796.2897 277200.9775 201142.5096 222725.4266 223437.2481 230553.5126 213674.0467 190276.8118 0.96711171 1.175982549 1.076307133 1.456830051 1.057104687 1.170533732 1.174274711 1.211674247 1.122964195 1 17.53774023 S(ph)QVIEK ddPTM_HeLa_A485_30min_R1 1 SQVIEK 6 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)QVIEK 95.523 0.013786 182220000 225070 210400 144520 258500 238500 220220 324920 316410 190660 332930 TRUE FALSE FALSE 275136.045 235004.4498 197983.962 272621.2004 214754.1026 231750.3787 255498.1876 238809.9514 228923.7132 249936.6781 1.100823005 0.940255954 0.792136486 1.090761078 0.859234044 0.927236372 1.022251674 0.955481817 0.915926845 1 17.93120311 S(ph)QVIEKFEALDIEK ddPTM_HeLa_A485_30min_R1 1 SQVIEKFEALDIEK 14 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)QVIEKFEALDIEK 156.92 8.64E-09 39411000 36708 30803 29469 57383 93821 67650 127220 175570 47291 110910 TRUE FALSE FALSE 44873.56796 34405.1429 40370.80941 60517.68799 84479.85181 71192.04939 100038.4077 132511.1822 56781.86992 83262.17815 0.538942999 0.413214543 0.48486372 0.726832871 1.014624571 0.855034675 1.201486797 1.591493102 0.681964743 1 16.34537368 -5.685709501 1.202181699 1.13142928 0.443123162 0.571440695 0.225566842 0.320764662 0.972316873 0.090175309 0.142771468 2.06E-06 5.685709501 -0.688306118 S(ph)QVMNVIGSER ddPTM_HeLa_A485_30min_R1 1 SQVMNVIGSER 11 0 A0A096LNH6;Q14185 A0A096LNH6 DOCK1 Dedicator of cytokinesis protein 1 1 0 S(1)QVMNVIGSER 67.846 0.010839 0 56574 70632 65491 69605 82145 51261 95925 81408 62160 89876 TRUE FALSE FALSE 69158.69112 78891.79798 89718.84621 73407.3449 73966.35537 53944.9467 75429.84011 61442.56036 74634.94183 67471.56725 1.025004961 1.1692599 1.329728208 1.087974504 1.09625963 0.799521175 1.117950022 0.91064374 1.106168789 1 16.04199205 -5.826428526 2.751566247 0.988118533 1.172703256 0.317404868 0.113003948 0.298498941 4.602359962 0.036261555 0.043767676 1.49E-06 5.826428526 0.184584723 S(ph)QVMNVIGSER ddPTM_HeLa_A486_30min_R1 1 SQVMNVIGSER 11 0 A0A096LNH6;Q14185 A0A096LNH6 DOCK1 Dedicator of cytokinesis protein 1 1 0 S(1)QVMNVIGSER 120.77 0.00015291 237280000 35086 34596 19405 7804.3 31510 30517 37866 28727 17223 24702 TRUE FALSE FALSE 32626.65258 31854.48696 26919.13568 18168.80481 27557.72198 26752.12281 28391.52629 22186.48921 18715.90351 18516.45842 1.762035258 1.720333675 1.453795055 0.981224616 1.488282552 1.444775357 1.533312994 1.198203712 1.010771233 1 14.17652056 -1 0.16973351 1.000619867 3.979301195 0.526577367 0.191566177 57.01129937 0.61556461 0.55488273 43.11957202 0.1 1 2.978681329 S(ph)QVNGEAGSYEMTNQHVK ddPTM_HeLa_A485_30min_R1 1 SQVNGEAGSYEMTNQHVK 18 0 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 S(1)QVNGEAGSYEMTNQHVK 247.36 1.07E-45 75769000 26980 21282 22141 37531 34519 26341 34019 34440 29467 55159 TRUE FALSE FALSE 32981.60792 23770.74477 30331.87726 39581.2235 31082.16716 27720.17403 26750.56274 25993.536 35380.75661 41408.87643 0.796486424 0.574049499 0.732496988 0.955863257 0.750616048 0.669425892 0.64601035 0.627728599 0.854424454 1 15.33765244 -8.005283292 5.629840327 0.999837641 0.720112069 0.442518504 0.100262106 0.131070896 17.96609981 0.103627449 0.026931899 9.88E-09 8.005283292 -0.279725572 S(ph)QVNGEAGSYEMTNQHVK ddPTM_HeLa_A486_30min_R1 1 SQVNGEAGSYEMTNQHVK 18 0 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 S(1)QVNGEAGSYEMTNQHVK 74.561 0.0028071 223310000 80984 91410 41191 24106 84996 85273 81457 89233 66498 90082 TRUE FALSE FALSE 75307.4398 84166.33869 57141.25833 56119.98625 74335.00912 74752.88425 61075.59704 68916.59384 72262.10018 67524.88086 1.115254686 1.246449273 0.846225237 0.831100855 1.100853614 1.107042075 0.90449026 1.020610373 1.070155167 1 16.04313157 -4.747537552 24.999992 0.985911771 1.180852017 0.392063616 0.097518156 251.9003598 452990.8893 0.026355455 0.068965353 1.79E-05 4.747537552 0.194940246 S(ph)RADLTAEMISAPLGDFR ddPTM_HeLa_A485_30min_R1 5 SRADLTAEMISAPLGDFR 18 1 Q9H3Q1;Q9H3Q1-2;J3KRZ9;J3QQS6;J3QR93 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(0.66)RADLT(0.34)AEMISAPLGDFR;S(0.843)RADLT(0.157)AEMISAPLGDFR;S(0.969)RADLT(0.031)AEMISAPLGDFR;S(0.652)RADLT(0.348)AEMISAPLGDFR;S(0.5)RADLT(0.5)AEMISAPLGDFR ;;;; 251.51 9.63E-47 446309000 238413 316444 262466 217065 319148 304403 332942 387808 259562 314934 TRUE FALSE FALSE 291447.1493 353449.3731 359563.0955 228922.7113 287372.5045 320341.0704 261806.2218 292697.4799 311653.7126 236426.7497 1.232716474 1.49496355 1.520822394 0.96826062 1.215482194 1.354927354 1.107346026 1.238004922 1.318182959 1 17.85103375 -1.000000003 0.027491993 1.43E-09 3.012032265 0.233487745 0.154801126 2513.691102 5.318470786 193.0106216 434.5359473 0.099999999 1.000000003 3.012032264 S(ph)RADLTAEMISAPLGDFR ddPTM_HeLa_A486_30min_R1 4 SRADLTAEMISAPLGDFR 18 1 Q9H3Q1;Q9H3Q1-2;J3KRZ9;J3QQS6;J3QR93 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(0.792)RADLT(0.208)AEMISAPLGDFR;S(0.999)RADLT(0.001)AEMISAPLGDFR;S(0.99)RADLT(0.01)AEMISAPLGDFR;S(0.826)RADLT(0.174)AEMISAPLGDFR ;;; 207.64 8.89E-26 367259000 289851 291922 203092 108314.4 246742 244850 278139 299421 230909 279610 TRUE FALSE FALSE 269533.9417 268789.0376 281734.6614 252161.3971 215793.3176 214642.8965 208545.6803 231249.3746 250924.378 209593.836 1.285982197 1.28242816 1.344193449 1.203095482 1.029578549 1.024089737 0.99499911 1.103321448 1.197193499 1 17.67723676 -5.576983304 3.695453042 1.059007483 1.300152028 0.785862821 0.058115412 0.108231771 3.046915738 0.018793584 0.025531482 2.65E-06 5.576983304 0.241144545 S(ph)RAPGPRDTDDDEEEPDPYGFIVQTAEIAEIAR ddPTM_HeLa_A485_30min_R1 2 SRAPGPRDTDDDEEEPDPYGFIVQTAEIAEIAR 33 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.576)RAPGPRDT(0.424)DDDEEEPDPYGFIVQTAEIAEIAR;S(0.5)RAPGPRDT(0.5)DDDEEEPDPYGFIVQTAEIAEIAR ; 211.87 4.68E-30 49518000 17866.8 27284.8 26038 23228.1 39607 31248 41467 48115 26068.2 35904 TRUE FALSE FALSE 21841.20802 30475.52001 35670.53973 24496.99229 35663.58801 32884.09696 32607.2367 36314.72081 31299.84863 26953.79356 0.810320372 1.130657914 1.323395894 0.908851373 1.323137982 1.220017393 1.209745731 1.347295353 1.161240942 1 14.71820072 -4.286488087 3.734392276 1.197653654 0.778875877 0.410432179 0.133776913 0.217331678 5.757446617 0.032282478 0.241078872 5.17E-05 4.286488087 -0.418777777 S(ph)RAS(ph)PATHR ddPTM_HeLa_A485_30min_R1 1 SRASPATHR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.998)RAS(0.976)PAT(0.026)HR 68.033 0.017898 436590000 164370 140030 80297 237550 68353 161400 98592 142320 174310 202020 TRUE FALSE FALSE 200933.5394 156405.2904 110002.2017 250526.755 61547.53532 169850.6544 77527.01378 107415.7969 209292.4181 151660.1319 1.324893609 1.031288107 0.725320494 1.651895932 0.405825411 1.119942679 0.511189149 0.70826654 1.380009469 1 17.21048236 -4.328004605 3.515001767 0.922893789 1.347916359 0.091416827 0.361817389 0.585904911 12.23984848 0.088211883 0.582500156 4.70E-05 4.328004605 0.42502257 S(ph)RAS(ph)PATHR ddPTM_HeLa_A486_30min_R1 1 SRASPATHR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RAS(0.9)PAT(0.101)HR 62.044 0.030368 303120000 86771 53049 73089 32293 44224 120600 58583 58825 150100 102480 TRUE FALSE FALSE 80688.80099 48845.20404 101391.0182 75179.736 38677.01355 105721.5982 43924.91377 45431.83164 163110.7889 76818.34097 1.050384582 0.63585341 1.319880343 0.978669092 0.503486707 1.37625464 0.571802427 0.591419068 2.123331314 1 16.22916319 -7.74677922 24.99975933 1.561666103 0.882306578 0.333957347 0.385901729 221.8878884 378386.1722 0.248107178 0.092890286 1.79E-08 7.74677922 -0.679359524 S(ph)RAS(ph)PVSR ddPTM_HeLa_A485_30min_R1 4 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RAS(0.999)PVS(0.001)R;S(1)RAS(1)PVSR;S(1)RAS(1)PVSR;S(1)RAS(0.998)PVS(0.002)R ;;; 94.547 0.0034973 22489480000 370034 406495 283652 368841 448448 432047 487094 500512 359482 422180 TRUE FALSE FALSE 452346.7867 454031.0542 388586.6785 388989.8499 403798.9425 454668.3128 383022.3877 377760.6472 431626.74 316938.2956 1.427239286 1.432553467 1.226064139 1.22733622 1.274061696 1.434564138 1.208507754 1.191905972 1.361863637 1 18.27384247 -13.92504359 0.143560757 1.64E-11 1.405345699 0.530361893 0.09000905 114.9909907 1.019419912 33.17719848 0.546381734 1.19E-14 13.92504359 1.405345699 S(ph)RAS(ph)PVSR ddPTM_HeLa_A486_30min_R1 2 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RAS(0.998)PVS(0.002)R;S(1)RAS(1)PVSR ; 85.536 0.0054457 10085800000 124492 122412 124662 65361.5 114252 145109 172510 128761 163676 131949 TRUE FALSE FALSE 115765.7537 112711.6273 172934.465 152164.8752 99921.4488 127206.9269 129346.1734 99444.93113 177863.5675 98908.11156 1.170437408 1.139558986 1.748435616 1.538446876 1.010245239 1.28611218 1.307740804 1.005427458 1.798270786 1 16.59380122 -5.737565891 24.99885892 1.241133299 1.405616437 0.079774149 0.272972254 676.3454201 708224.1355 0.080673518 0.104091999 1.83E-06 5.737565891 0.164483138 S(ph)RASPVSR ddPTM_HeLa_A486_30min_R1 2 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.859)RAS(0.138)PVS(0.002)R;S(0.849)RAS(0.151)PVSR ; 64.439 0.012115 3320370000 331384 162113 306349 119789 210546 431259 287490 236870 374403 347340 TRUE FALSE FALSE 308155.6929 149266.5755 424975.5371 278874.8458 184137.3574 378054.6493 215556.9612 182939.8718 406856.5535 260363.8032 1.183558118 0.573300027 1.6322374 1.071096836 0.707231017 1.452024608 0.827906793 0.702631739 1.562646376 1 17.99016937 -5.522272383 24.99973889 1.023555145 1.120326732 0.010070409 0.357963727 143.1637054 5902747.339 0.103371572 0.135026247 3.00E-06 5.522272383 0.096771588 S(ph)RDAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_A485_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 3 0 S(1)RDAT(1)PPVS(1)PINMEDQER 52.465 0.032252 343350000 101400 143550 134690 115180 181120 135490 167980 165840 117420 145950 TRUE FALSE FALSE 123956.0802 160336.9238 184517.4359 121471.9917 163087.0568 142584.0469 132089.7007 125167.48 140985.117 109567.351 1.131323145 1.463364061 1.684054914 1.108651351 1.488463994 1.301336991 1.205557125 1.142379357 1.286743867 1 16.74145844 -7.554577211 0.473196621 1.012448745 1.405567988 0.294248582 0.167001166 1.14054505 0.661384127 0.184969048 0.11588496 2.79E-08 7.554577211 0.393119243 S(ph)RDAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_A486_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 3 0 S(1)RDAT(1)PPVS(1)PINMEDQER 112.58 1.65E-05 0 138210 152450 119650 66722 187360 155640 172420 180100 146470 193280 TRUE FALSE FALSE 128522.1927 140369.3068 165981.6843 155332.1879 163859.5617 136438.7192 129278.6923 139095.1616 159166.1375 144881.43 0.887085341 0.968856442 1.145638088 1.072133178 1.130990782 0.941726757 0.89230685 0.960062042 1.098595849 1 17.14451317 -6.297757184 24.9916135 0.970652708 1.044485571 0.113261607 0.085610536 1264.357723 870046.5398 0.032376435 0.028554864 5.04E-07 6.297757184 0.073832863 S(ph)RDAT(ph)PPVSPINMEDQER ddPTM_HeLa_A486_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 0 S(1)RDAT(0.999)PPVS(0.002)PINMEDQER 75.226 0.0041924 169840000 136510 132840 106550 69491 151580 137730 186660 184260 130570 183650 TRUE FALSE FALSE 126941.3539 122313.2746 147809.0135 161778.5599 132567.423 120738.2729 139955.6937 142308.0204 141887.9127 137662.8446 0.92211776 0.888498817 1.073703031 1.17517955 0.962986224 0.877057809 1.01665554 1.033743133 1.030691419 1 17.0707797 -4.750098685 24.99694205 1.020559729 0.905308233 0.292888697 0.072054521 303.6908223 669377.0659 0.020371264 0.052869905 1.78E-05 4.750098685 -0.115251496 S(ph)RDATPPVSPINMEDQER ddPTM_HeLa_A485_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 0 S(0.566)RDAT(0.434)PPVSPINMEDQER 65.454 0.00572 337720000 12067 13843 17221 19097 17450 16440 20446 18609 16584 27955 TRUE FALSE FALSE 14751.26252 15461.81843 23591.76453 20140.22075 15712.61673 17300.77298 16077.54507 14045.11357 19912.25668 20986.33297 0.702898526 0.736756557 1.124148967 0.959682703 0.748707111 0.82438285 0.766095968 0.669250487 0.948820202 1 14.35716248 -5.76742122 24.97220466 0.806574968 0.887954698 0.022773584 0.141367835 446.436866 1863724.244 0.045161124 0.052541434 1.71E-06 5.76742122 0.08137973 S(ph)RDATPPVSPINMEDQER ddPTM_HeLa_A486_30min_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 0 S(0.5)RDAT(0.5)PPVSPINMEDQER;S(0.569)RDAT(0.431)PPVSPINMEDQER ; 63.559 0.0076519 550660000 85292 86949 58397 81464 87674 104265 129701 130669 73741 167061 TRUE FALSE FALSE 79313.47125 80058.84458 81009.88233 189652.309 76677.10939 91401.84439 97248.43796 100918.5212 80132.92925 125227.8382 0.633353353 0.639305491 0.64689995 1.51445806 0.612300831 0.729884391 0.776572041 0.805879289 0.63989709 1 16.93419578 -13.99999529 0.019174848 1.918769887 5.05E-06 0.03723075 0.258459798 19747.58685 28.6102109 1906.930326 1068.21118 1.00E-14 13.99999529 -1.918764836 S(ph)RDRHDDYYR ddPTM_HeLa_A485_30min_R1 3 SRDRHDDYYR 10 2 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 S(1)RDRHDDYYR;S(1)RDRHDDYYR;S(1)RDRHDDYYR ;; 164.88 2.04E-07 11351240000 119017 285443 267726 121472 287842 231497 271759 429909 166838 197762 TRUE FALSE FALSE 145491.921 318823.0758 366768.9884 128107.7078 259183.4398 243617.825 213695.4696 324473.1437 200320.8563 148463.5729 0.979983966 2.147483517 2.470430835 0.862889834 1.745771267 1.640926593 1.439379811 2.185540448 1.349292977 1 17.17974947 -8.000149576 24.99957732 0.999999908 1.695591719 0.169906482 0.481795527 6.845212815 1144290.167 0.456052837 0.117752336 1.00E-08 8.000149576 0.695591811 S(ph)RDRHDDYYR ddPTM_HeLa_A486_30min_R1 2 SRDRHDDYYR 10 2 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 S(1)RDRHDDYYR;S(1)RDRHDDYYR ; 175 5.22E-08 8183700000 132758 121247 126458 83745 201343 124191 113141 146383 94325 131447 TRUE FALSE FALSE 123452.3498 111638.9461 175425.9243 194962.5922 176088.6835 108869.5771 84831.92512 113054.7864 102501.1669 98531.81562 1.252918654 1.133024348 1.780398779 1.978676542 1.787125127 1.104918005 0.860959727 1.14739372 1.040284971 1 16.58830202 -6.358762166 5.76309148 1.02099179 1.592414452 0.566465237 0.243673153 0.202237899 9.777220321 0.099593182 0.087531944 4.38E-07 6.358762166 0.571422663 S(ph)RDS(ph)GDENEPIQER ddPTM_HeLa_A485_30min_R1 1 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 2 0 S(1)RDS(1)GDENEPIQER 140.89 4.33E-06 1972300000 1552800 1579000 1354900 1985700 1943300 1491300 1990300 1703400 1559400 2522300 TRUE FALSE FALSE 1898215.003 1763650.315 1856133.892 2094173.763 1749818.229 1569382.162 1565056.146 1285638.479 1872357.276 1893537.029 1.002470495 0.931405242 0.980246947 1.105958706 0.924100348 0.828809861 0.826525239 0.678961361 0.988814714 1 20.8526522 -6.017402173 5.651442757 0.844894616 1.000335101 0.318067883 0.094514042 0.185561124 19.99417803 0.030214267 0.031885341 9.61E-07 6.017402173 0.155440485 S(ph)RDS(ph)GDENEPIQER ddPTM_HeLa_A486_30min_R1 3 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 2 0 S(1)RDS(1)GDENEPIQER;S(1)RDS(1)GDENEPIQER;S(1)RDS(1)GDENEPIQER ;; 162.37 3.11E-11 3425100000 1509320 2096240 1271730 696780 1783780 2017590 2120850 1920530 1565490 2126540 TRUE FALSE FALSE 1403524.462 1930126.308 1764177.914 1622139.053 1560041.679 1768680.259 1590190.898 1483267.244 1701187.934 1594040.543 0.880482287 1.210838907 1.106733403 1.017627225 0.978671268 1.109557889 0.997584977 0.930507854 1.067217482 1 20.60425689 -6.184181959 0.881406503 0.999696699 1.068383413 0.033771434 0.089713357 1.686172463 2.843611917 0.054399208 0.054813901 6.54E-07 6.184181959 0.068686714 S(ph)RECDITK ddPTM_HeLa_A485_30min_R1 5 SRECDITK 8 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(1)RECDITK;S(1)RECDITK;S(1)RECDITK;S(1)RECDITK;S(1)RECDITK ;;;; 170.4 1.15E-05 4291720000 2519430 2251260 1658120 3742170 3172960 2668610 4114110 4284700 2176700 4294450 TRUE FALSE FALSE 3079868.512 2514525.274 2271527.588 3946595.271 2857048.961 2808334.293 3235096.789 3233870.607 2613543.724 3223922.648 0.955317124 0.779958314 0.704585015 1.224159417 0.886202702 0.87109233 1.003466008 1.003085669 0.81067197 1 21.6203857 -5.177064593 24.99991951 0.965038524 0.809954413 0.266600767 0.119705565 119.7949276 35492.78135 0.032034872 0.055486042 6.65E-06 5.177064593 -0.155084111 S(ph)RECDITK ddPTM_HeLa_A486_30min_R1 6 SRECDITK 8 1 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(1)RECDITK;S(1)RECDITK;S(1)RECDITK;S(1)RECDITK;S(1)RECDITK;S(1)RECDITK ;;;;; 141.44 0.00019863 3928090000 4181730 4348930 2082360 2179850 3762000 4752510 5991740 5627420 3266710 6526630 TRUE FALSE FALSE 3888612.321 4004304.948 2888705.56 5074800.964 3290134.881 4166193.636 4492543.278 4346179.312 3549871.053 4892319.367 0.794840244 0.818488052 0.590457275 1.037299608 0.672510242 0.851578428 0.918284957 0.888367865 0.725600842 1 22.22208715 -14 0.120276772 1.583534413 0.726557171 0.182494019 0.12062692 262.0689224 2.038836301 37.51569057 1.119417357 1.00E-14 14 -0.856977242 S(ph)REDLSAQPVQTK ddPTM_HeLa_A485_30min_R1 5 SREDLSAQPVQTK 13 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.96)REDLS(0.04)AQPVQTK;S(0.797)REDLS(0.203)AQPVQTK;S(1)REDLSAQPVQTK;S(1)REDLSAQPVQTK;S(0.996)REDLS(0.004)AQPVQTK ;;;; 191.47 7.40E-18 2906990000 2183060 1869420 1417390 3120510 2684500 1970550 2973580 2478010 1780200 4077203.2 TRUE FALSE FALSE 2668674.166 2088032.407 1941741.544 3290975.56 2417221.754 2073724.951 2338250.341 1870274.162 2137469.811 3060831.478 0.871878829 0.682178167 0.634383682 1.075190053 0.789727161 0.677503798 0.763926521 0.611034673 0.698329793 1 21.54549218 -6.019268452 24.44061873 0.727476457 0.810773162 0.031811376 0.146220138 1769.143692 2244027.555 0.048027594 0.04878183 9.57E-07 6.019268452 0.083296705 S(ph)REDLSAQPVQTK ddPTM_HeLa_A486_30min_R1 4 SREDLSAQPVQTK 13 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.988)REDLS(0.012)AQPVQTK;S(1)REDLSAQPVQTK;S(1)REDLSAQPVQTK;S(1)REDLSAQPVQTK ;;; 226.22 1.74E-31 3822570000 3492860 3624620 1816240 1616180 3374620 3898190 4741960 4398460 2917160 4996950 TRUE FALSE FALSE 3248028.551 3337391.911 2519536.769 3762548.717 2951343.693 3417270.952 3555471.453 3397026.676 3170021.778 3745681.195 0.867139615 0.890997321 0.672651151 1.004503192 0.787932432 0.912322959 0.949218918 0.906918261 0.846313824 1 21.83679668 -6.151225046 1.083205429 0.921153218 0.837046369 0.148801756 0.087140116 1.050221277 2.594707339 0.043756281 0.043948617 7.06E-07 6.151225046 -0.084106849 S(ph)REDLSAQPVQTKFPAYER ddPTM_HeLa_A485_30min_R1 5 SREDLSAQPVQTKFPAYER 19 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.955)REDLS(0.045)AQPVQTKFPAYER;S(1)REDLSAQPVQTKFPAYER;S(1)REDLSAQPVQTKFPAYER;S(1)REDLSAQPVQTKFPAYER;S(1)REDLSAQPVQTKFPAYER ;;;; 271.54 1.14E-69 2590000000 750386 1377442 681073 418310 1232979 1621218 2139482 3441670 716970 739185 TRUE FALSE FALSE 917306.7769 1538521.86 933030.2445 441161.2161 1110219.282 1706102.468 1682364.193 2597595.036 860859.3026 554919.7832 1.653043926 2.772512183 1.681378593 0.794999979 2.00068427 3.074502873 3.031725024 4.681027988 1.551322062 1 19.08191971 -6.179122237 4.957886275 2.919258904 1.75709941 0.136307623 1.033905611 0.349197331 15.05428338 0.340895818 0.339661692 6.62E-07 6.179122237 -1.162159494 S(ph)REDLSAQPVQTKFPAYER ddPTM_HeLa_A486_30min_R1 3 SREDLSAQPVQTKFPAYER 19 2 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(1)REDLSAQPVQTKFPAYER;S(1)REDLSAQPVQTKFPAYER;S(1)REDLSAQPVQTKFPAYER ;; 236.94 7.57E-46 1247840000 1190330 743416 530585 510219 1307470 698572 1302120 1339140 520207 1534570 TRUE FALSE FALSE 1106894.014 684505.0087 736041.7216 1187815.617 1143474.921 612389.2892 976315.8036 1034247.055 565298.9616 1150303.684 0.962262427 0.595064606 0.639867308 1.032610461 0.994063513 0.532371841 0.848746133 0.899107836 0.49143454 1 20.13358336 -11.28394361 2.369648625 2.034634304 0.780247582 0.110096871 0.189791521 11831909.94 1400639.027 66423467.36 0.04694145 5.20E-12 11.28394361 -1.254386722 S(ph)REDLTAVVSVSTK ddPTM_HeLa_A485_30min_R1 1 SREDLTAVVSVSTK 14 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.605)REDLT(0.395)AVVSVSTK 109.5 0.00014046 104860000 190180 136480 107640 282510 191010 149460 225860 188600 137800 389010 TRUE FALSE FALSE 232484.8849 152440.1488 147460.5153 297942.8059 171992.3737 157285.4945 177603.1659 142345.5543 165455.196 292036.9662 0.796080332 0.521989222 0.504937841 1.020222918 0.588940421 0.538580771 0.60815303 0.487423069 0.56655566 1 18.15579147 -10.16181507 5.049177269 1.000019256 0.62261462 0.342188506 0.155557111 3.94E-05 6.54E-06 0.153202423 0.037154871 6.89E-11 10.16181507 -0.377404636 S(ph)REDLTAVVSVSTK ddPTM_HeLa_A486_30min_R1 1 SREDLTAVVSVSTK 14 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.8)REDLT(0.2)AVVSVSTK 143.46 4.73E-08 105650000 214310 232250 172090 139430 237190 241130 288010 256960 218380 299390 TRUE FALSE FALSE 199287.9757 213845.6642 238727.8567 324600.0864 207439.4185 211381.8322 215946.8517 198455.8174 237309.3542 224420.7953 0.888010291 0.952878114 1.06375105 1.446390411 0.924332427 0.941899488 0.962240827 0.884302264 1.057430324 1 17.77584684 S(ph)REHPHS(ph)RS(ph)PS(ph)PEPR ddPTM_HeLa_A485_30min_R1 2 SREHPHSRSPSPEPR 15 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 4 0 S(1)REHPHS(1)RS(1)PS(1)PEPR;S(1)REHPHS(1)RS(1)PS(1)PEPR ; 84.025 0.0012588 817420000 143487 215200 185573 190608 291900 210898 246929 331670 212175 260280 TRUE FALSE FALSE 175405.1881 240365.768 254224.175 201020.4324 262837.4111 221940.2932 194170.6019 250327.4125 254756.5763 195396.9861 0.897686252 1.230140612 1.301064976 1.028779596 1.345145677 1.135842971 0.993723628 1.281122178 1.303789692 1 17.57604869 -4.255788346 23.86553927 1.185765847 0.897686012 0.305648273 0.127363083 398.9346661 1684688.247 0.030889601 0.258847699 5.55E-05 4.255788346 -0.288079835 S(ph)REHPHS(ph)RS(ph)PS(ph)PEPR ddPTM_HeLa_A486_30min_R1 2 SREHPHSRSPSPEPR 15 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 4 0 S(1)REHPHS(1)RS(1)PS(1)PEPR;S(1)REHPHS(1)RS(1)PS(1)PEPR ; 68.291 0.005545 488720000 153512 172210 191270 89879 264859 180853 217188 227624 174773 210922 TRUE FALSE FALSE 142751.6015 158563.4524 265334.8664 209242.8542 231637.9145 158541.1956 162845.2652 175798.9842 189922.4644 158105.7583 0.902886796 1.00289486 1.678211276 1.323436012 1.465082088 1.002754089 1.029976814 1.111907536 1.201236858 1 17.27053039 -6.28167332 24.71812129 1.073719384 1.284559755 0.190885513 0.210754281 1329.299493 1623889.423 0.079889916 0.070546788 5.23E-07 6.28167332 0.210840371 S(ph)RENLSAVMLYNPGLEFER ddPTM_HeLa_A485_30min_R1 1 SRENLSAVMLYNPGLEFER 19 1 A0A1B0GTU3;Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2 A0A1B0GTU3 KIF16B Kinesin-like protein KIF16B 1 0 S(0.5)RENLS(0.5)AVMLYNPGLEFER 90.097 0.00029894 334430000 60813 69331 57713 63003 72328 60085 81945 83127 52405 74864 TRUE FALSE FALSE 74340.64205 77438.65735 79063.44034 66444.69436 65126.77036 63230.95769 64436.78132 62739.97291 62922.20281 56201.78257 1.32274527 1.377868349 1.406778161 1.182252436 1.158802575 1.125070323 1.146525579 1.116334217 1.119576639 1 15.77832827 -5.405972799 3.193389329 1.1209985 1.37042288 0.86050487 0.046231543 0.08724028 1.674272906 0.01324694 0.02057559 3.93E-06 5.405972799 0.249424381 S(ph)RENLSAVMLYNPGLEFER ddPTM_HeLa_A486_30min_R1 1 SRENLSAVMLYNPGLEFER 19 1 A0A1B0GTU3;Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2 A0A1B0GTU3 KIF16B Kinesin-like protein KIF16B 1 0 S(0.5)RENLS(0.5)AVMLYNPGLEFER 78.758 0.0014302 506350000 38618 37413 29343 16707 46082 34444 48026 45466 27326 37498 TRUE FALSE FALSE 35911.07762 34448.25762 40705.39543 38894.74033 40301.96586 30194.64948 36009.38683 35114.38432 29694.63968 28108.25673 1.277598891 1.225556532 1.448165065 1.383747868 1.433812358 1.074227042 1.281096412 1.249255144 1.056438326 1 14.77870636 -7.584092503 0.663138681 0.995193738 1.339701595 0.545639606 0.100803896 0.565515962 0.544153944 0.102409131 0.047121559 2.61E-08 7.584092503 0.344507857 S(ph)RERPSAPR ddPTM_HeLa_A485_30min_R1 1 SRERPSAPR 9 2 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 S(0.997)RERPS(0.003)APR 83.573 0.0041092 469160000 83981 114870 93331 93774 144220 107580 124020 159600 97171 121930 TRUE FALSE FALSE 102662.2837 128303.0473 127858.0207 98896.63617 129860.9504 113212.7224 97522.11385 120457.8498 116672.3284 91535.09496 1.121561995 1.401681479 1.396819666 1.080423156 1.418701215 1.236823128 1.065406814 1.315974488 1.274618532 1 16.48203736 -6.522652349 24.99999546 1.18472885 1.289600562 0.138895189 0.136522988 19.01948574 2100755.965 0.050653266 0.039673062 3.00E-07 6.522652349 0.104871712 S(ph)RERPSAPR ddPTM_HeLa_A486_30min_R1 3 SRERPSAPR 9 2 Q8N5F7;A0A494C050 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 S(0.981)RERPS(0.019)APR;S(0.996)RERPS(0.004)APR;S(0.991)RERPS(0.009)APR ;; 81.709 0.0049966 646326000 155888 151322 102153.7 56277.1 170885 144920 170966 165460 125740 173148 TRUE FALSE FALSE 144961.0562 139330.6936 141710.3484 131015.9329 149451.0099 127041.2438 128188.4985 127788.37 136639.2444 129790.6138 1.116883972 1.073503619 1.091838187 1.009440737 1.151477796 0.978816881 0.987656154 0.984573277 1.052766764 1 16.98582653 -6.283665744 24.98614297 0.998979286 1.083567532 0.560482053 0.038759083 615.7426963 692195.0038 0.013187318 0.011637551 5.20E-07 6.283665744 0.084588246 S(ph)RERPSQPEGLR ddPTM_HeLa_A485_30min_R1 6 SRERPSQPEGLR 12 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.993)RERPS(0.007)QPEGLR;S(1)RERPSQPEGLR;S(0.993)RERPS(0.007)QPEGLR;S(0.981)RERPS(0.019)QPEGLR;S(0.998)RERPS(0.002)QPEGLR;S(1)RERPSQPEGLR ;;;;; 118.71 0.00012256 11532330000 1603496 1997336 1923826 1897616 2605754 1802964 2452530 2534447 1721348 2514684 TRUE FALSE FALSE 1960188.153 2230907.071 2635529.294 2001277.957 2346315.982 1897364.407 1928526.93 1912869.899 2066806.754 1887819.558 1.038334487 1.18173745 1.396070553 1.060100235 1.242870894 1.005056018 1.021563169 1.013269457 1.094811602 1 20.84828944 -6.268445674 24.83720147 1.027433328 1.188624951 0.402524836 0.095476598 523.0127196 1854067.436 0.033345318 0.030039805 5.39E-07 6.268445674 0.161191623 S(ph)RERPSQPEGLR ddPTM_HeLa_A486_30min_R1 6 SRERPSQPEGLR 12 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.999)RERPS(0.001)QPEGLR;S(0.999)RERPS(0.001)QPEGLR;S(1)RERPSQPEGLR;S(0.999)RERPS(0.001)QPEGLR;S(0.98)RERPS(0.02)QPEGLR;S(0.979)RERPS(0.021)QPEGLR ;;;;; 98.676 0.00086843 12452690000 2064220 2257870 1909100 831734 2348940 2149230 2393730 2323170 1998570 2375240 TRUE FALSE FALSE 1919528.838 2078948.158 2648354.647 1936318.786 2054314.042 1884079.854 1794793.436 1794234.905 2171807.657 1780464.444 1.078105684 1.167643738 1.487451579 1.087535779 1.153807957 1.05819572 1.008047896 1.007734196 1.219798387 1 20.76382219 -5.478384858 24.99999447 1.075366806 1.245186226 0.305918869 0.116067114 555.3815789 312054.4038 0.033132891 0.049141323 3.32E-06 5.478384858 0.16981942 S(ph)RERPSQPEGLRK ddPTM_HeLa_A485_30min_R1 6 SRERPSQPEGLRK 13 3 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.999)RERPS(0.001)QPEGLRK;S(1)RERPSQPEGLRK;S(0.965)RERPS(0.035)QPEGLRK;S(1)RERPSQPEGLRK;S(0.835)RERPS(0.165)QPEGLRK;S(1)RERPSQPEGLRK ;;;;; 145.62 5.22E-07 23753020000 7631850 7948820 5632839 8189570 10564670 9257310 12145720 13601290 6707710 11363790 TRUE FALSE FALSE 9329528.703 8878365.353 7716660.548 8636945.472 9512814.36 9742008.437 9550687.701 10265552.3 8053885.87 8531006.288 1.093602371 1.040717244 0.904542827 1.012418135 1.115087018 1.141953025 1.11952651 1.203322557 0.944072199 1 23.0242845 -5.753217727 20.98798014 1.101834302 1.007078462 0.151479755 0.081741763 38.03389872 97086.45402 0.024117671 0.030443502 1.77E-06 5.753217727 -0.09475584 S(ph)RERPSQPEGLRK ddPTM_HeLa_A486_30min_R1 5 SRERPSQPEGLRK 13 3 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(1)RERPSQPEGLRK;S(1)RERPSQPEGLRK;S(1)RERPSQPEGLRK;S(0.999)RERPS(0.001)QPEGLRK;S(1)RERPSQPEGLRK ;;;; 158.64 4.70E-08 13742250000 6218080 5904930 3573150 2925820 5958740 6097900 7418550 7036830 4198410 7632950 TRUE FALSE FALSE 5782224.702 5437001.841 4956769.372 6811456.823 5211339.266 5345603.097 5562350.325 5434697.422 4562331.559 5721609.638 1.010594058 0.95025739 0.866324284 1.190479123 0.91081699 0.934283084 0.972165296 0.949854633 0.797386024 1 22.44798964 S(ph)RERS(ph)PSPLRGNVVPS(ph)PLPTR ddPTM_HeLa_A485_30min_R1 1 SRERSPSPLRGNVVPSPLPTR 21 3 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(0.854)RERS(0.877)PS(0.269)PLRGNVVPS(0.998)PLPT(0.002)R 68.101 0.0048424 210610000 44851 75161 80552 54204 168940 110050 154420 213460 80703 104300 TRUE FALSE FALSE 54827.95022 83950.42514 110351.5368 57165.02727 152119.7404 115812.0478 121426.9055 161108.6003 96899.35185 78299.9295 0.70022988 1.07216476 1.409344013 0.730077634 1.942782597 1.479082402 1.550792016 2.057582955 1.237540729 1 16.25672339 -5.757655013 24.99999438 1.594539973 1.015496982 0.390448181 0.342204233 96.97490358 640623.4822 0.098289862 0.122033564 1.75E-06 5.757655013 -0.579042991 S(ph)RES(ph)LNVDVVK ddPTM_HeLa_A485_30min_R1 3 SRESLNVDVVK 11 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0;H0YGB8 Q07866-4 KLC1 Kinesin light chain 1 2 0 S(1)RES(1)LNVDVVK;S(1)RES(1)LNVDVVK;S(1)RES(1)LNVDVVK ;; 93.768 0.0024978 1124210000 1170880 940590 669940 1944230 1224230 1127880 1739840 1384530 916730 2391740 TRUE FALSE FALSE 1431338.217 1050583.818 917778.6845 2050438.362 1102341.363 1186934.053 1368108.971 1044971.847 1100709.302 1795523.235 0.797170534 0.585112906 0.51114832 1.141972614 0.61393879 0.661051904 0.761955593 0.581987371 0.613029829 1 20.77597289 -11.16873495 2.268009539 1.734306324 0.695860914 0.223782458 0.169641607 11037414.04 2470170.069 41624913.23 0.042169809 6.78E-12 11.16873495 -1.03844541 S(ph)RES(ph)LNVDVVK ddPTM_HeLa_A486_30min_R1 3 SRESLNVDVVK 11 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0;H0YGB8 Q07866-4 KLC1 Kinesin light chain 1 2 0 S(1)RES(1)LNVDVVK;S(1)RES(1)LNVDVVK;S(1)RES(1)LNVDVVK ;; 96.666 0.0033678 1125830000 1806750 2023150 998170 1142280 1623350 2341680 2854100 2399490 1607460 3001890 TRUE FALSE FALSE 1680106.155 1862828.226 1384688.156 2659285.568 1419734.306 2052787.33 2139973.992 1853178.507 1746795.927 2250197.205 0.746648405 0.827851098 0.615363024 1.181801116 0.630937725 0.912269967 0.951016199 0.82356271 0.776285707 1 21.10162001 -14 0.022161442 2.091160584 1.36E-08 0.105552935 0.154509397 6589.368361 11.01847687 723.6575992 370.5052706 1.00E-14 14 -2.091160571 S(ph)RES(ph)SPSHGLLK ddPTM_HeLa_A485_30min_R1 3 SRESSPSHGLLK 12 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 2 0 S(0.865)RES(0.872)S(0.253)PS(0.01)HGLLK;S(0.983)RES(0.837)S(0.14)PS(0.04)HGLLK;S(0.942)RES(0.881)S(0.174)PS(0.003)HGLLK ;; 96.153 0.0016561 2879350000 2701350 2801050 2160430 3354120 3822320 3176410 4638320 4999400 2824280 4866000 TRUE FALSE FALSE 3302255.988 3128608.432 2959662.96 3537347.083 3441756.4 3342721.916 3647305.04 3773289.311 3391087.09 3652995.752 0.903985718 0.85645006 0.810201588 0.968341417 0.942173666 0.915063182 0.998442179 1.032930112 0.928303048 1 21.80064865 -5.68557049 1.050816284 0.983559242 0.857617004 0.541085515 0.043980334 0.410840731 0.959264922 0.019646344 0.032806077 2.06E-06 5.68557049 -0.125942238 S(ph)RES(ph)SPSHGLLK ddPTM_HeLa_A486_30min_R1 2 SRESSPSHGLLK 12 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 2 0 S(0.858)RES(0.869)S(0.218)PS(0.056)HGLLK;S(0.883)RES(0.787)S(0.295)PS(0.036)HGLLK ; 90.385 0.002354 1922530000 1462390 1499700 908320 407480 1483590 1525220 1970180 1947530 1203780 1747180 TRUE FALSE FALSE 1359884.013 1380858.31 1260045.83 948634.0329 1297504.308 1337053.864 1477220.126 1504119.933 1308124.62 1309674.756 1.038337195 1.054352086 0.962105915 0.724327951 0.990707275 1.020905273 1.127928991 1.148468295 0.998816396 1 20.32077715 -6.366275256 3.011670667 1.079641535 0.94642485 0.237474005 0.095798033 0.38091242 6.647455958 0.039350403 0.034224397 4.30E-07 6.366275256 -0.133216685 S(ph)RESASPTIPNLDLLEAHTK ddPTM_HeLa_A485_30min_R1 3 SRESASPTIPNLDLLEAHTK 20 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 S(0.385)RES(0.385)AS(0.225)PT(0.005)IPNLDLLEAHTK;S(0.331)RES(0.331)AS(0.331)PT(0.006)IPNLDLLEAHTK;S(0.382)RES(0.382)AS(0.234)PT(0.001)IPNLDLLEAHTK ;; 197.37 2.18E-26 332484000 239121 281692 216492 310875 374664 303649 441920 564360 255732 501377 TRUE FALSE FALSE 292312.6415 314633.429 296581.3998 327857.3141 337361.1366 319547.5921 347500.1818 425949.8251 307055.0667 376392.9411 0.776615631 0.835917454 0.78795686 0.871050645 0.896300381 0.848973393 0.923237776 1.131662629 0.815783276 1 18.52188005 -6.246213484 0.694840155 0.98689588 0.796531185 0.413413631 0.078619853 0.696937835 0.738535148 0.056821903 0.058974798 5.67E-07 6.246213484 -0.190364695 S(ph)RESASPTIPNLDLLEAHTK ddPTM_HeLa_A486_30min_R1 1 SRESASPTIPNLDLLEAHTK 20 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 S(0.387)RES(0.387)AS(0.226)PTIPNLDLLEAHTK 234.39 3.22E-46 97922000 130530 116990 85085 55998 136190 123170 160300 158320 99766 164800 TRUE FALSE FALSE 121380.5211 107719.2863 118032.1907 130366.174 119107.7803 107974.5377 120191.2445 122273.9921 108413.7972 123533.0073 0.982575618 0.871987889 0.955470875 1.055314501 0.964177776 0.87405415 0.972948422 0.989808269 0.877609957 1 16.91453705 -6.616790043 0.002575641 1.90828331 1.09E-08 0.011283691 0.057890379 248931.0815 340.7039209 125608.8134 126806.9092 2.42E-07 6.616790043 -1.908283299 S(ph)RESLNVDVVK ddPTM_HeLa_A485_30min_R1 6 SRESLNVDVVK 11 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0;H0YGB8 Q07866-4 KLC1 Kinesin light chain 1 1 0 S(0.839)RES(0.161)LNVDVVK;S(0.777)RES(0.223)LNVDVVK;S(1)RESLNVDVVK;S(0.999)RES(0.001)LNVDVVK;S(0.67)RES(0.33)LNVDVVK;S(0.95)RES(0.05)LNVDVVK ;;;;; 124.5 3.15E-05 4431394000 1804375 1722837 1161402 2340633 2159524 1899125 2714961 2646614 1584514 2983375 TRUE FALSE FALSE 2205751.994 1924307.8 1591052.93 2468495.854 1944514.208 1998560.248 2134887.403 1997527.767 1902511.426 2239674.517 0.984853815 0.859190827 0.71039471 1.102167228 0.868212855 0.892344058 0.95321324 0.891883062 0.849458888 1 21.09485766 -10.32412163 4.305714316 1.000122533 0.900369472 0.08676019 0.096021276 0.000110495 1.73E-05 0.090955598 0.022032907 4.74E-11 10.32412163 -0.099753061 S(ph)RESLNVDVVK ddPTM_HeLa_A486_30min_R1 5 SRESLNVDVVK 11 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0;H0YGB8 Q07866-4 KLC1 Kinesin light chain 1 1 0 S(0.995)RES(0.005)LNVDVVK;S(0.999)RES(0.001)LNVDVVK;S(0.937)RES(0.063)LNVDVVK;S(0.854)RES(0.146)LNVDVVK;S(0.997)RES(0.003)LNVDVVK ;;;; 169.15 1.93E-08 5315170000 4440120 3965290 2146802 1946352 3664540 4598640 5800980 5307520 3312190 5845030 TRUE FALSE FALSE 4128890.517 3651065.979 2978101.228 4531205.819 3204899.223 4031306.552 4349513.447 4099113.558 3599293.296 4381396.443 0.942368619 0.833311029 0.679715079 1.034192153 0.731478939 0.920096276 0.992723097 0.935572394 0.821494549 1 22.06295933 -6.494715945 24.75911225 0.935554441 0.843099538 0.161090043 0.10298123 1188.578888 1044931.862 0.035351635 0.031105946 3.20E-07 6.494715945 -0.092454903 S(ph)RESVDS(ph)RDS(ph)S(ph)HS(ph)RER ddPTM_HeLa_A486_30min_R1 1 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 5 0 S(0.762)RES(0.246)VDS(0.995)RDS(0.998)S(1)HS(0.999)RER 62.237 0.0074704 305920000 124260 105660 150590 102730 219490 188180 185060 173370 151180 187740 TRUE FALSE FALSE 115550.0157 97287.11679 208902.4809 239160.6317 191959.5175 164964.2649 138756.0306 133897.4356 164284.4041 140728.682 0.82108362 0.691309798 1.484434288 1.699444834 1.364039759 1.172214949 0.985982592 0.951458038 1.167383946 1 17.10255687 -6.640081701 4.937399153 1.023246423 1.228968638 0.088368712 0.280829933 0.598842139 23.36316898 0.126311346 0.096325999 2.29E-07 6.640081701 0.205722215 S(ph)REYEHVR ddPTM_HeLa_A486_30min_R1 1 SREYEHVR 8 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 S(1)REYEHVR 122.98 0.00031154 242270000 145730 148520 160720 86686 194870 169470 188990 204870 133590 172010 TRUE FALSE FALSE 135515.0796 136750.7343 222955.0882 201809.3889 170427.5875 148562.5144 141702.7031 158225.5733 145169.6888 128937.5764 1.051013082 1.060596438 1.72917077 1.56517126 1.321783705 1.152204955 1.099002378 1.227148654 1.125891248 1 16.97631325 -6.235957303 4.215050073 1.131772916 1.366187619 0.241947892 0.198068647 0.361569946 15.32609016 0.076111917 0.072956951 5.81E-07 6.235957303 0.234414703 S(ph)RFTPELQPK ddPTM_HeLa_A485_30min_R1 2 SRFTPELQPK 10 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.723)RFT(0.277)PELQPK;S(0.922)RFT(0.078)PELQPK ; 117.93 0.00017898 733050000 1442030 1382190 1138240 1684770 2047700 1583850 2070310 2240560 1396530 2346910 TRUE FALSE FALSE 1762804.599 1543825.097 1559322.342 1776804.719 1843823.798 1666777.937 1627971.356 1691059.147 1676800.761 1761868.529 1.000531294 0.876243075 0.885038989 1.008477472 1.04651611 0.946028554 0.924002744 0.959810065 0.951717301 1 20.74867484 -5.259689698 24.99943491 0.974417259 0.916168315 0.238432546 0.04557323 239.3115311 3419260.44 0.013346637 0.02165075 5.50E-06 5.259689698 -0.058248943 S(ph)RFTPELQPK ddPTM_HeLa_A486_30min_R1 2 SRFTPELQPK 10 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.781)RFT(0.219)PELQPK;S(0.604)RFT(0.396)PELQPK ; 131.13 3.65E-05 614768000 1063630 981300 525190 442059 1030270 1079440 1326380 1328780 794600 1376790 TRUE FALSE FALSE 989075.0296 903538.2142 728557.6331 1029135.692 901043.9297 946269.6677 994505.695 1026245.801 863476.5678 1032032.823 0.958375555 0.87549368 0.705944246 0.997192793 0.873076815 0.916898811 0.963637661 0.994392599 0.83667549 1 19.97705742 -5.325766012 24.99987954 0.937234483 0.849487663 0.236219837 0.076992381 307.4694602 119493.9177 0.021516536 0.031914187 4.72E-06 5.325766012 -0.08774682 S(ph)RGQGYVGGQR ddPTM_HeLa_A485_30min_R1 4 SRGQGYVGGQR 11 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(1)RGQGYVGGQR;S(1)RGQGYVGGQR;S(1)RGQGYVGGQR;S(1)RGQGYVGGQR ;;; 142.55 5.33E-07 1256520000 264128 378128 385383 279245 513846 376408 482338 530102 370848 387254 TRUE FALSE FALSE 322882.3624 422346.7803 527952.2088 294499.4473 462685.688 396116.1408 379282.546 400093.6533 445273.792 290718.7047 1.110634979 1.452767825 1.81602422 1.013004814 1.591523629 1.362540953 1.304637575 1.376222606 1.53163104 1 18.14926437 -10.47755954 3.169565536 0.991184286 1.399814251 0.228569839 0.217810383 26400009.09 37401991.11 2092562.745 0.053842968 3.33E-11 10.47755954 0.408629965 S(ph)RGQGYVGGQR ddPTM_HeLa_A486_30min_R1 4 SRGQGYVGGQR 11 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(1)RGQGYVGGQR;S(1)RGQGYVGGQR;S(1)RGQGYVGGQR;S(1)RGQGYVGGQR ;;; 134.02 1.41E-05 1002510000 359953 400675 337639 123513 443910 343589 401903 417199 334294 390691 TRUE FALSE FALSE 334722.1535 368924.0538 468381.8631 287544.506 388230.6685 301200.4825 301342.6185 322211.8951 363270.8731 292859.4306 1.142944766 1.259730831 1.599340209 0.981851619 1.325655341 1.028481418 1.028966757 1.100227144 1.240427437 1 18.15984883 -5.289623436 24.99914105 1.108339999 1.326577995 0.342933394 0.147560922 832.3042918 738248.5948 0.041315961 0.061294923 5.13E-06 5.289623436 0.218237995 S(ph)RGQNRPTNVK ddPTM_HeLa_A485_30min_R1 4 SRGQNRPTNVK 11 2 Q5TBQ1;Q9BX40-2;Q9BX40;Q5TBP9;Q5TBQ0;Q9BX40-3 Q5TBQ1 LSM14B Protein LSM14 homolog B 1 0 S(1)RGQNRPTNVK;S(1)RGQNRPTNVK;S(1)RGQNRPTNVK;S(1)RGQNRPTNVK ;;; 107.69 0.00029077 787950000 262468 298930 175848 298017 265812 285169 383018 380246 245571 389844 TRUE FALSE FALSE 320853.1011 333887.2632 240901.4928 314296.9141 239346.824 300100.0079 301183.0753 286990.0723 294854.8472 292663.0653 1.096322492 1.140858901 0.823135959 1.073920666 0.817823813 1.025411278 1.02911201 0.980615958 1.007489096 1 18.15888116 -4.717026227 24.99999382 0.971407227 1.118591168 0.351089619 0.080946655 139.6358639 78598.55861 0.019421521 0.051383933 1.92E-05 4.717026227 0.14718394 S(ph)RGQNRPTNVK ddPTM_HeLa_A486_30min_R1 3 SRGQNRPTNVK 11 2 Q5TBQ1;Q9BX40-2;Q9BX40;Q5TBP9;Q5TBQ0;Q9BX40-3 Q5TBQ1 LSM14B Protein LSM14 homolog B 1 0 S(1)RGQNRPTNVK;S(1)RGQNRPTNVK;S(1)RGQNRPTNVK ;; 115.09 0.0001648 499700000 337409 200682 151735 116142 195549 287429 298177 236135 226784 360688 TRUE FALSE FALSE 313758.3715 184779.2274 210490.8556 270384.4455 171021.421 251968.9323 223569.9608 182372.2153 246441.8197 270369.3771 1.160480432 0.68343253 0.778530682 1.000055733 0.632547306 0.93194331 0.826905633 0.67452985 0.91150049 1 18.04457223 -4.246792314 24.50779853 0.817589037 1.160480749 0.379586423 0.12758559 2006.81933 3357784.018 0.029726793 0.631267623 5.67E-05 4.246792314 0.342891712 S(ph)RGRASSHSSQTQGGGSVTK ddPTM_HeLa_A485_30min_R1 1 SRGRASSHSSQTQGGGSVTK 20 2 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.197)RGRAS(0.197)S(0.197)HS(0.192)S(0.192)QT(0.026)QGGGSVTK 95.205 0.00018139 39897000 2017.1 21898 10692 339.39 19365 17513 24700 48551 4642.3 1731.9 TRUE FALSE FALSE 2465.796936 24458.78061 14647.41573 357.9300163 17436.95261 18429.9536 19422.64322 36643.79112 5573.967028 1300.169203 1.89652003 18.81199812 11.26577656 0.27529495 13.4112949 14.17504241 14.93855044 28.18386333 4.28710895 1 10.34448367 -5.027575004 24.94635964 10 11.52542239 0 8.591431993 7118.549039 6439959.828 2.422791839 4.210505114 9.38E-06 5.027575004 1.525422395 S(ph)RGWYSR ddPTM_HeLa_A486_30min_R1 2 SRGWYSR 7 1 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 S(1)RGWYSR;S(1)RGWYSR ; 60.754 0.017364 164744000 147264 118985 125167 43923 135894 156501 127814 134579 122533 165559 TRUE FALSE FALSE 136941.5541 109556.1953 173635.0145 102254.9637 118848.9074 137193.4978 95833.58532 103938.2995 133154.2591 124101.9488 1.103460142 0.882791901 1.399132054 0.823959372 0.957671564 1.105490277 0.772216603 0.837523508 1.072942531 1 16.92116624 S(ph)RINIYQR ddPTM_HeLa_A486_30min_R1 1 SRINIYQR 8 1 H0YA77;H0Y9I8;A0A494BZW6;Q9H799-5;Q9H799 H0YA77 C5orf42 Uncharacterized protein C5orf42 1 0 S(0.999)RINIY(0.001)QR 41.54 0.036155 320180000 38109 54176 51799 14404 62548 40846 53092 49052 42211 44088 TRUE FALSE FALSE 35437.7559 49882.89645 71856.96003 33533.23994 54702.6466 35806.83581 39807.82005 37883.9304 45869.88347 33048.07784 1.072309139 1.509403866 2.174315867 1.014680494 1.655244425 1.083477108 1.204542674 1.146327801 1.387974323 1 15.01227874 -6.268451378 24.8762698 1.176114757 1.498681201 0.206289762 0.313582065 878.7342711 3117451.457 0.109002487 0.098190608 5.39E-07 6.268451378 0.322566445 S(ph)RKSPHKDLGHR ddPTM_HeLa_A485_30min_R1 2 SRKSPHKDLGHR 12 3 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 S(0.5)RKS(0.5)PHKDLGHR;S(0.895)RKS(0.105)PHKDLGHR ; 103.79 0.00064321 932580000 676620 429970 215759 721560 344860 733590 1045860 983100 424460 765970 TRUE FALSE FALSE 827131.7847 480251.2513 295577.2326 760976.9957 310524.5275 771999.6381 822403.4671 741993.1836 509645.2286 575027.7756 1.438420577 0.835179224 0.514022531 1.323374327 0.540016571 1.342543214 1.430197813 1.290360596 0.886296715 1 19.13327212 -6.309569146 24.99995869 1.22304712 0.923644347 0.143454788 0.311839386 702.0415425 364658.0918 0.108026795 0.095270869 4.90E-07 6.309569146 -0.299402773 S(ph)RKSPHKDLGHR ddPTM_HeLa_A486_30min_R1 1 SRKSPHKDLGHR 12 3 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 S(0.64)RKS(0.36)PHKDLGHR 120.7 0.00011038 352380000 795490 485130 251220 193860 226170 800260 820910 946290 472980 1111300 TRUE FALSE FALSE 739730.2589 446686.532 348499.1119 451315.8771 197801.6496 701532.0576 615509.6353 730840.4244 513978.2872 833023.2467 0.888006742 0.536223369 0.418354606 0.541780651 0.237450336 0.842151837 0.738886505 0.877334969 0.617003534 1 19.66799723 -6.306446332 24.99967127 0.802647098 0.5201001 0.403595678 0.176336169 474.3874061 263502.977 0.061572005 0.05430164 4.94E-07 6.306446332 -0.282546998 S(ph)RLGDLYEEEMR ddPTM_HeLa_A485_30min_R1 1 SRLGDLYEEEMR 12 1 P08670;B0YJC4 P08670 VIM Vimentin 1 0 S(1)RLGDLYEEEMR 75.764 0.0042645 89924000 17759 23530 20797 17393 29708 26961 29476 31736 20160 25684 TRUE FALSE FALSE 21709.42828 26281.62882 28490.67574 18343.13555 26750.16721 28372.63627 23178.2118 23952.69624 24205.92708 19281.45148 1.125922927 1.363052405 1.477620902 0.951335825 1.38735236 1.471498984 1.20209891 1.24226624 1.255399632 1 14.23492604 -8.713450893 0.892301793 0.997769337 1.288902036 0.228403 0.152636394 4.677619504 4.63998849 0.174233268 0.04948086 1.93E-09 8.713450893 0.291132699 S(ph)RLGDLYEEEMR ddPTM_HeLa_A486_30min_R1 2 SRLGDLYEEEMR 12 1 P08670;B0YJC4 P08670 VIM Vimentin 1 0 S(1)RLGDLYEEEMR;S(1)RLGDLYEEEMR ; 224.67 1.88E-23 149687000 95088 105505 85514 46116 123207 111947 123028 135182 90684 112244 TRUE FALSE FALSE 88422.82223 97144.39956 118627.3109 107360.3786 107753.2292 98136.11733 92245.09314 104404.0096 98544.56214 84137.37181 1.050933971 1.154592751 1.409924132 1.27601298 1.280682138 1.166379639 1.096362902 1.240875575 1.171234138 1 16.36045913 -6.405998652 5.624666014 1.145186818 1.24163961 0.183463151 0.104080311 0.468318235 19.88466217 0.039166987 0.034279119 3.93E-07 6.405998652 0.096452792 S(ph)RLLPWLEAS(ph)FT(ph)AASLGK ddPTM_HeLa_A485_30min_R1 1 SRLLPWLEASFTAASLGK 18 1 E7EVV3;Q8TC71-2;Q8TC71;D6RAX6 E7EVV3 SPATA18 Mitochondria-eating protein 3 0 S(0.995)RLLPWLEAS(0.995)FT(0.995)AAS(0.014)LGK 50.608 0.035472 59799000 36677 66817 82273 41948 155850 42153 48369 36500 139070 73153 TRUE FALSE FALSE 44835.67212 74630.66692 112709.2064 44239.51302 140333.0268 44360.0659 38034.56801 27548.31777 166980.0734 54917.30338 0.816421589 1.358964522 2.052344151 0.805566011 2.55535174 0.807761182 0.692578945 0.501632747 3.040573063 1 15.74497317 S(ph)RLSAIEIDIPVVSHTT ddPTM_HeLa_A485_30min_R1 5 SRLSAIEIDIPVVSHTT 17 1 P56749 P56749 CLDN12 Claudin-12 1 0 S(0.5)RLS(0.5)AIEIDIPVVSHTT;S(0.642)RLS(0.358)AIEIDIPVVSHTT;S(0.5)RLS(0.5)AIEIDIPVVSHTT;S(0.5)RLS(0.5)AIEIDIPVVSHTT;S(0.701)RLS(0.299)AIEIDIPVVSHTT ;;;; 298.76 7.47E-69 600758000 411341 514550 346848 408101 382846 488855 609596 612478 444331 858758 TRUE FALSE FALSE 502842.3863 574722.1465 475161.5087 430394.5243 344728.508 514450.6919 479350.8347 462266.8102 533504.1561 644685.4349 0.779980994 0.891476859 0.737043964 0.667603921 0.534723587 0.797987149 0.743542213 0.717042429 0.827541817 1 19.29823586 -8.085992676 2.835987133 0.999821974 0.732739548 0.467456777 0.087046176 0.35776743 6.505080517 0.091509015 0.024555175 8.20E-09 8.085992676 -0.267082426 S(ph)RLSAIEIDIPVVSHTT ddPTM_HeLa_A486_30min_R1 4 SRLSAIEIDIPVVSHTT 17 1 P56749 P56749 CLDN12 Claudin-12 1 0 S(0.5)RLS(0.5)AIEIDIPVVSHTT;S(0.5)RLS(0.5)AIEIDIPVVSHTT;S(0.5)RLS(0.5)AIEIDIPVVSHTT;S(0.717)RLS(0.283)AIEIDIPVVSHTT ;;; 258.5 8.14E-52 292346000 311488 317743 316579 76565 455242 341089 321483 333814 389038 414060 TRUE FALSE FALSE 289654.2997 292563.8875 439166.8671 178247.1894 398141.3034 299008.9071 241044.5531 257811.8393 422760.1271 310376.6809 0.933234736 0.942609112 1.41494801 0.57429311 1.282768094 0.963374266 0.776619404 0.830641782 1.362087274 1 18.24366064 S(ph)RLSSSSSNDSGNK ddPTM_HeLa_A486_30min_R1 3 SRLSSSSSNDSGNK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.604)RLS(0.301)S(0.076)S(0.018)S(0.001)SNDSGNK;S(0.608)RLS(0.257)S(0.04)S(0.095)SSNDSGNK;S(0.7)RLS(0.298)S(0.002)S(0.001)SSNDSGNK ;; 171.87 1.50E-12 1122750000 334195 345314 270806 174550 317391 471800 517200 460210 328388 402390 TRUE FALSE FALSE 310769.6563 317950.061 375669.3356 406361.2213 277580.8612 413594.1129 387791.0896 355430.2293 356852.9362 301628.9249 1.030304559 1.054109983 1.245468536 1.347222324 0.920272687 1.371201761 1.285656174 1.178369181 1.183085927 1 18.20241526 -4.722616247 8.48460468 1.203412805 1.040935411 0.160575968 0.134248059 0.434109928 83.96568906 0.033190655 0.087087465 1.89E-05 4.722616247 -0.162477394 S(ph)RLTPVSPESSSTEEK ddPTM_HeLa_A485_30min_R1 2 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.57)RLT(0.421)PVS(0.009)PESSSTEEK;S(0.497)RLT(0.497)PVS(0.006)PESSSTEEK ; 149.84 2.59E-08 815330000 528180 449060 313670 702870 628310 549770 877230 869820 441350 925820 TRUE FALSE FALSE 645671.8188 501573.6607 429709.5859 741266.0083 565753.2503 578555.1071 689802.6442 656495.2812 529924.8967 695030.1125 0.928983949 0.721657453 0.618260386 1.066523587 0.813998185 0.832417325 0.992478789 0.944556602 0.762448831 1 19.40671596 -5.256347923 24.99979309 0.909196701 0.752836293 0.294072596 0.113042825 561.6584859 2757817.405 0.030716458 0.051228108 5.54E-06 5.256347923 -0.156360408 S(ph)RNHIMGRY(ph)FS(ph)NQSK ddPTM_HeLa_A486_30min_R1 1 SRNHIMGRYFSNQSK 15 2 A4D0V7 A4D0V7 CPED1 Cadherin-like and PC-esterase domain-containing protein 1 3 0 S(1)RNHIMGRY(0.997)FS(0.997)NQS(0.006)K 42.123 0.027639 2690100000 433750 513990 356670 23223 560150 434240 379240 474040 450310 162960 TRUE FALSE FALSE 403346.3649 473259.5605 494782.176 54064.31763 489890.7638 380667.8838 284350.1408 366111.4402 489343.2334 122153.7553 3.301956324 3.874293994 4.050486821 0.44259235 4.010443744 3.116301115 2.327805151 2.997136185 4.005961439 1 16.89833869 -10.7537145 2.585495078 0.517128096 3.094117374 0.271834915 1.042369706 40118408.26 32030140.3 124189082.5 0.257476183 1.76E-11 10.7537145 2.576989278 S(ph)RNSFSSYAQLPKPTSTYSLSSFFR ddPTM_HeLa_A485_30min_R1 1 SRNSFSSYAQLPKPTSTYSLSSFFR 25 2 G3V4K3;Q9H9C1 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 S(0.556)RNS(0.412)FS(0.03)S(0.001)YAQLPKPTSTYSLSSFFR 105.05 0.00021696 181940000 57499 60949 48236 53121 63692 55725 76870 91194 45053 76508 TRUE FALSE FALSE 70289.45418 68076.45536 66080.50367 56022.86572 57350.60084 58642.67483 60446.09653 68828.52851 54094.72385 57435.96363 1.223788194 1.185258348 1.150507443 0.975396984 0.998513775 1.02100968 1.052408504 1.198352464 0.941826696 1 15.80966675 -5.073509428 4.252694945 1.035037867 1.198585146 0.559743315 0.06560702 0.173822683 5.929430913 0.018533038 0.034752215 8.44E-06 5.073509428 0.163547279 S(ph)RNSFSSYAQLPKPTSTYSLSSFFR ddPTM_HeLa_A486_30min_R1 1 SRNSFSSYAQLPKPTSTYSLSSFFR 25 2 G3V4K3;Q9H9C1 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 S(0.821)RNS(0.177)FS(0.002)SYAQLPKPTSTYSLSSFFR 190.15 6.26E-21 136760000 97770 102630 68241 31759 97116 115010 120780 149150 93938 133600 TRUE FALSE FALSE 90916.82788 94497.22503 94665.74276 73936.55701 84934.80571 100821.2355 90559.56652 115191.8009 102080.6215 100145.6904 0.907845635 0.943597519 0.945280245 0.738289952 0.848112439 1.006745624 0.904278219 1.150242217 1.019321162 1 16.61174081 -7.236316047 21.8568903 1.063586186 0.898633547 0.472952237 0.076011141 132.4439015 115224.1937 0.037703347 0.021745106 5.80E-08 7.236316047 -0.164952639 S(ph)RNTDEMVELR ddPTM_HeLa_A485_30min_R1 2 SRNTDEMVELR 11 1 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 S(0.64)RNT(0.36)DEMVELR;S(0.529)RNT(0.471)DEMVELR ; 120.7 7.53E-05 694090000 372320 497670 452430 297580 535570 520070 561000 687590 377500 373620 TRUE FALSE FALSE 455141.2995 555868.1773 619802.6842 313836.0419 482246.7703 547300.061 441137.7671 518957.4744 453260.7874 280483.41 1.622703102 1.981821946 2.209765933 1.118911247 1.719341512 1.95127427 1.572776683 1.850225204 1.615998563 1 18.09755592 -11.32134344 0.34361522 1.44E-12 1.784327628 0.393410431 0.277499274 52.70599339 2.333416566 40.46280418 0.231087069 4.77E-12 11.32134344 1.784327628 S(ph)RNTDEMVELR ddPTM_HeLa_A486_30min_R1 1 SRNTDEMVELR 11 1 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 S(0.566)RNT(0.434)DEMVELR 99.055 0.0007412 440360000 158230 176640 194860 66840 232380 147230 151670 191970 142270 179540 TRUE FALSE FALSE 147138.8941 162642.4031 270315.0105 155606.8979 203232.7335 129066.2595 113720.5618 148262.6217 154602.0782 134582.0154 1.093302799 1.208500279 2.008552255 1.156223567 1.510103211 0.959015654 0.844990777 1.101652559 1.148757341 1 17.03812611 -6.266441419 24.76522344 1.006868254 1.405740138 0.369036362 0.251139652 420.1893493 2080361.062 0.088925751 0.08085771 5.41E-07 6.266441419 0.398871884 S(ph)RPCSLPVSELETVIASACGDPETPR ddPTM_HeLa_A485_30min_R1 2 SRPCSLPVSELETVIASACGDPETPR 26 1 Q76N89-2;Q76N89 Q76N89-2 HECW1 E3 ubiquitin-protein ligase HECW1 1 0 S(0.276)RPCS(0.241)LPVS(0.241)ELET(0.241)VIAS(0.001)ACGDPETPR;S(0.323)RPCS(0.323)LPVS(0.323)ELET(0.032)VIASACGDPETPR ; 96.757 0.0011642 35752000 19602.9 24214 26561 21688 29137 22829 30951 26042 24252 24658 TRUE FALSE FALSE 23963.49748 27045.61667 36387.0192 22872.76052 26236.01797 24024.29114 24338.066 19655.15867 29119.15395 18511.2144 1.294539459 1.461039567 1.965674343 1.235616423 1.417303987 1.297823612 1.314774141 1.061797365 1.573054761 1 14.17611192 S(ph)RPETGRPRPK ddPTM_HeLa_A485_30min_R1 1 SRPETGRPRPK 11 3 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435;A0A2R8Y6L3;Q9NQ39 P46783 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 S(1)RPETGRPRPK 86.944 0.018671 137330000 30299 34944 32053 43172 42242 44025 58558 67621 31207 50314 TRUE FALSE FALSE 37038.90802 39030.39683 43910.73854 45530.37704 38036.23816 46330.08092 46046.60493 51036.84372 37469.95865 37771.64576 0.980600852 1.03332529 1.162531779 1.205411523 1.007005053 1.226583592 1.219078597 1.351194598 0.992012868 1 15.20501602 -4.671123003 3.5688658 1.161215933 0.99094378 0.193395865 0.111516117 0.322611273 7.771470517 0.028612177 0.087898216 2.13E-05 4.671123003 -0.170272153 S(ph)RPLITR ddPTM_HeLa_A485_30min_R1 1 SRPLITR 7 1 J3QLL6;J3KSG1;Q719H9 J3QLL6 KCTD1 BTB/POZ domain-containing protein KCTD1 1 0 S(1)RPLITR 43.124 0.034891 222580000 0 3600.2 4447.5 0 1793.1 1592.9 2634.1 3437.2 2137.2 1910.4 TRUE FALSE FALSE 0 4021.212072 6092.815326 0 1614.572668 1676.301781 2071.303016 2594.221311 2566.116436 1434.172438 0 2.803855356 4.248314333 0 1.125786987 1.168828612 1.444249632 1.808862896 1.789266317 1 10.48600278 -5.282089313 24.99962439 1.231613108 2.396037063 0.194639607 1.077650631 1320.113289 1598178.175 0.310083154 0.460493803 5.22E-06 5.282089313 1.164423955 S(ph)RPT(ph)SFADELAAR ddPTM_HeLa_A486_30min_R1 1 SRPTSFADELAAR 13 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 S(0.973)RPT(0.614)S(0.413)FADELAAR 71.558 0.0087798 38752000 47677 50915 40574 17151 51913 41210 50400 50435 38584 49564 TRUE FALSE FALSE 44335.0885 46880.30997 56285.33941 39928.39476 45401.58747 36125.92919 37789.38692 38952.05149 41928.49219 37152.85179 1.193315893 1.261822652 1.514966865 1.074706055 1.222021602 0.972359522 1.017132874 1.048426961 1.128540345 1 15.18118533 -5.703659185 1.764142325 1.043725887 1.30769658 0.517947232 0.107668054 0.279288908 1.792778878 0.037199354 0.051718157 1.98E-06 5.703659185 0.263970693 S(ph)RPTS(ph)FADELAAR ddPTM_HeLa_A485_30min_R1 1 SRPTSFADELAAR 13 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 2 0 S(0.99)RPT(0.048)S(0.962)FADELAAR 76.391 0.0047793 0 185290 229070 193730 184920 223030 187000 267270 242780 158910 209440 TRUE FALSE FALSE 226507.1213 255857.7439 265398.7888 195021.7114 200824.3501 196791.0308 210165.5811 183237.8243 190801.7794 157230.4625 1.440605832 1.627278454 1.687960365 1.24035577 1.277261079 1.251608803 1.336672155 1.16540918 1.21351662 1 17.26252123 -5.368861501 0.247948044 0.998190987 1.862534815 0.677408834 0.112875939 3.566380388 0.305258992 0.201900438 0.938781068 4.28E-06 5.368861501 0.864343828 S(ph)RPTSFADELAAR ddPTM_HeLa_A485_30min_R1 2 SRPTSFADELAAR 13 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 S(1)RPTSFADELAAR;S(0.49)RPT(0.49)S(0.02)FADELAAR ; 139.81 1.53E-06 368410000 232510 389850 385590 240770 409890 307660 344720 354610 354630 272647 TRUE FALSE FALSE 284231.0473 435439.5663 528235.7867 253922.6554 369079.9124 323768.6019 271067.7559 267641.3415 425800.9881 204681.1206 1.388652977 2.127404643 2.580774354 1.240576828 1.803194703 1.581819569 1.324341762 1.307601506 2.080313939 1 17.64301851 -5.281265948 24.94110633 1.50127094 2.041790168 0.2939605 0.393116382 976.3742812 1228241.23 0.10909543 0.162054598 5.23E-06 5.281265948 0.540519228 S(ph)RQTPS(ph)PDVVLR ddPTM_HeLa_A485_30min_R1 1 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.725)RQT(0.275)PS(1)PDVVLR 110.57 0.00045575 4248200000 859840 1095000 1019400 987020 1347000 1078800 1349600 1354400 1049200 1240700 TRUE FALSE FALSE 1051108.442 1223050.725 1396518.481 1040938.403 1212887.95 1135284.3 1061246.935 1022231.276 1259764.816 931416.3234 1.128505498 1.313108536 1.499349373 1.117586601 1.302197438 1.21887954 1.139390526 1.097501999 1.352526024 1 19.82906664 -6.350966968 1.247591694 1.15300822 1.289384017 0.16194192 0.12936572 0.865305898 2.748002547 0.066474141 0.055369048 4.46E-07 6.350966968 0.136375797 S(ph)RQTPS(ph)PDVVLR ddPTM_HeLa_A486_30min_R1 1 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.562)RQT(0.442)PS(0.996)PDVVLR 78.244 0.0080167 296930000 109220 133610 166620 40868 198290 105910 125790 127640 119550 116680 TRUE FALSE FALSE 101564.242 123022.257 231139.7262 95142.76935 173418.6192 92843.90101 94316.01153 98579.15836 129912.6903 87462.56854 1.161230955 1.406570366 2.642727399 1.087811288 1.982775284 1.061527263 1.078358584 1.127101113 1.485351876 1 16.4163781 -6.278031709 24.6796564 1.153904729 1.665580839 0.255776025 0.431184863 1014.481429 1508948.497 0.150417395 0.13302883 5.27E-07 6.278031709 0.51167611 S(ph)RS(ph)AS(ph)PRR ddPTM_HeLa_A485_30min_R1 2 SRSASPRR 8 2 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 0 S(1)RS(1)AS(1)PRR;S(1)RS(1)AS(1)PRR ; 69.815 0.014966 3141480000 1162540 1107960 633220 2044530 763540 1198730 1258380 1522130 1042990 2002480 TRUE FALSE FALSE 1421143.012 1237526.284 867474.4285 2156217.497 687519.2766 1261493.649 989516.833 1148825.231 1252308.526 1503298.589 0.945349795 0.823207241 0.577047324 1.434324167 0.457340466 0.839150425 0.658230401 0.76420296 0.833040445 1 20.51970016 S(ph)RS(ph)AS(ph)PRRS(ph)R ddPTM_HeLa_A485_30min_R1 2 SRSASPRRSR 10 3 Q16629;Q16629-4;C9JAB2;H7BZZ6;H7C1N1 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 4 0 S(1)RS(1)AS(1)PRRS(1)R;S(1)RS(1)AS(1)PRRS(1)R ; 54.004 0.013576 916050000 153380 188879 182560 369380 420340 316290 544690 858080 260760 539380 TRUE FALSE FALSE 187498.8518 210966.756 250096.541 389558.2941 378489.4737 332850.4553 428312.5318 647634.5346 313092.1402 404922.4926 0.463048745 0.521005279 0.617640525 0.962056446 0.934720794 0.822010289 1.057764238 1.599403704 0.773214988 1 18.62728626 -5.179557828 0.653864916 1.12702843 0.325861714 0.535181159 0.211169327 0.986485093 0.66748649 0.118396331 0.507160201 6.61E-06 5.179557828 -0.801166716 S(ph)RS(ph)FDYNYR ddPTM_HeLa_A485_30min_R1 5 SRSFDYNYR 9 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR ;;;; 149.32 8.41E-05 10535500000 2010650 1676290 1679810 3498380 2601760 1764670 2733900 1981550 1960990 4540140 TRUE FALSE FALSE 2457912.156 1872317.534 2301241.622 3689487.641 2342719.639 1857065.393 2149779.931 1495571.756 2354542.706 3408366.653 0.721140771 0.549329847 0.675174315 1.082479679 0.687343786 0.544854935 0.630736112 0.438794269 0.690812622 1 21.70064911 -9.966336791 6.209945522 1.000000127 0.666785646 0.275873603 0.160862957 3.04E-07 5.08E-08 0.167314369 0.04057968 1.08E-10 9.966336791 -0.333214481 S(ph)RS(ph)FDYNYR ddPTM_HeLa_A486_30min_R1 6 SRSFDYNYR 9 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR;S(1)RS(1)FDYNYR ;;;;; 121.56 0.00042685 19397220000 5157130 5592210 3434210 2879240 5049050 6197020 7615800 6723410 4855080 7816580 TRUE FALSE FALSE 4795641.818 5149062.913 4764028.083 6703016.229 4415751.068 5432494.679 5710246.288 5192636.314 5275922.244 5859257.491 0.818472618 0.878791028 0.813077099 1.144004379 0.75363663 0.927164353 0.974568245 0.886227704 0.900442121 1 22.48228642 S(ph)RS(ph)GS(ph)RGRDS(ph)PYQSR ddPTM_HeLa_A485_30min_R1 1 SRSGSRGRDSPYQSR 15 3 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 4 0 S(0.999)RS(0.995)GS(0.995)RGRDS(0.905)PY(0.089)QS(0.018)R 43.888 0.034604 197100000 57197 66724 76695 137980 137810 90077 146660 152970 78806 178820 TRUE FALSE FALSE 69920.27532 74526.79138 105067.672 145517.498 124089.1525 94793.29243 115324.8929 115453.8677 94621.64135 134243.4649 0.520846772 0.555161411 0.782665079 1.083981988 0.924358981 0.706129661 0.859072678 0.86003343 0.704851006 1 17.03449233 -4.816414745 3.822557449 0.86921462 0.529999913 0.594405387 0.11016841 0.149242541 4.387547784 0.030468151 0.074823307 1.53E-05 4.816414745 -0.339214707 S(ph)RS(ph)GS(ph)RGRDS(ph)PYQSR ddPTM_HeLa_A486_30min_R1 1 SRSGSRGRDSPYQSR 15 3 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 4 0 S(1)RS(1)GS(1)RGRDS(0.965)PY(0.032)QS(0.004)R 62.611 0.011103 109600000 43782 43269 54913 46200 72368 69692 82587 78675 54623 85272 TRUE FALSE FALSE 40713.10789 39840.20686 76176.78422 107555.9348 63290.93064 61094.10962 61922.85908 60762.41996 59357.76562 63919.33617 0.636945099 0.623288808 1.19176432 1.682682288 0.990168772 0.955800127 0.968765679 0.950610936 0.928635514 1 15.9639648 -4.754203608 24.75210767 1.091189675 0.630116657 0.417622331 0.214032027 150.3795924 514403.7032 0.060620868 0.153440282 1.76E-05 4.754203608 -0.461073018 S(ph)RS(ph)GS(ph)SPGLR ddPTM_HeLa_A485_30min_R1 2 SRSGSSPGLR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.995)GS(0.992)S(0.012)PGLR;S(1)RS(0.953)GS(0.916)S(0.131)PGLR ; 98.592 0.018435 1379440000 1016760 1266000 1134770 1415740 1639250 1230770 1476870 1402130 1191530 1694440 TRUE FALSE FALSE 1242934.754 1414047.687 1554568.645 1493078.291 1476040.514 1295211.214 1161324.66 1058255.419 1430659.142 1272047.292 0.977113636 1.111631381 1.222099724 1.173760049 1.160366068 1.018209954 0.912957142 0.831930877 1.124690215 1 20.27872088 -6.435039427 3.868353912 0.954104414 1.135029503 0.410837088 0.091319219 0.221984798 6.122605935 0.034813716 0.029706048 3.67E-07 6.435039427 0.180925088 S(ph)RS(ph)GSRGRDS(ph)PYQSR ddPTM_HeLa_A485_30min_R1 1 SRSGSRGRDSPYQSR 15 3 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 3 0 S(0.759)RS(0.825)GS(0.416)RGRDS(0.998)PY(0.001)QS(0.001)R 66.845 0.0092507 610740000 67164 131690 140720 110260 282570 182140 270240 376180 149390 162370 TRUE FALSE FALSE 82104.40009 147089.9999 192778.1838 116283.2246 254436.3386 191676.5688 212501.0163 283921.2652 179371.2027 121894.1472 0.673571307 1.206702728 1.581521248 0.953968893 2.087354844 1.572483775 1.743324197 2.329244444 1.471532529 1 16.89526933 -4.151801798 0.690846554 1.733407838 1.64E-13 0.334525914 0.400244727 3.674996794 1.205419111 0.167546429 5.176779254 7.05E-05 4.151801798 -1.733407838 S(ph)RS(ph)GSS(ph)QELDVKPSAS(ph)PQER ddPTM_HeLa_A486_30min_R1 1 SRSGSSQELDVKPSASPQER 20 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.982)RS(0.849)GS(0.374)S(0.795)QELDVKPS(0.163)AS(0.837)PQER 80.722 0.00079104 351570000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)RS(ph)HDRLPYQR ddPTM_HeLa_A485_30min_R1 2 SRSHDRLPYQR 11 2 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 S(1)RS(1)HDRLPYQR;S(1)RS(1)HDRLPYQR ; 115.31 0.0002327 678650000 34562 124689 202783 18874.5 98368 76683 49381 63940 98487 31558.6 TRUE FALSE FALSE 42250.19766 139270.2939 277800.8702 19905.56614 88574.13653 80698.00331 38830.34594 48258.61475 118252.4375 23691.62181 1.78333919 5.878461804 11.72570086 0.840194323 3.738626981 3.406183162 1.638990621 2.036948552 4.991318807 1 14.53208934 -5.320592814 24.99995051 2.615730567 6.404190444 0.335225875 2.540246115 294.2604404 124362.255 0.717782589 1.064643979 4.78E-06 5.320592814 3.788459877 S(ph)RS(ph)HDRLPYQR ddPTM_HeLa_A486_30min_R1 3 SRSHDRLPYQR 11 2 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 S(1)RS(1)HDRLPYQR;S(1)RS(1)HDRLPYQR;S(1)RS(1)HDRLPYQR ;; 97.45 0.0011306 1065700000 34026 54257.7 119261.3 11827.3 95622 14942.5 16875.5 39054.3 54454.5 33660.6 TRUE FALSE FALSE 31640.95311 49958.12225 165442.4693 27534.55212 83628.19712 13099.04627 12653.07141 30162.48844 59174.6599 25231.76667 1.254012592 1.979969255 6.556911828 1.091265328 3.314401176 0.519148994 0.501473859 1.195417223 2.345244417 1 14.6229536 -6.258477149 24.89553806 1.086296523 2.900990416 0.247195761 1.504678365 365.3343922 3070395.359 0.514932573 0.493807599 5.51E-07 6.258477149 1.814693893 S(ph)RS(ph)HS(ph)DNDRFK ddPTM_HeLa_A485_30min_R1 1 SRSHSDNDRFK 11 2 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 3 0 S(1)RS(1)HS(1)DNDRFK 62.377 0.025191 721980000 109180 129370 89662 203610 203970 166900 235790 276610 118910 302960 TRUE FALSE FALSE 133466.7143 144498.6961 122831.7049 214732.6987 183662.0306 175638.6259 185411.5403 208770.9638 142774.1463 227437.6476 0.586827712 0.635333234 0.540067602 0.944138761 0.807526953 0.772249572 0.815219214 0.917926148 0.627750717 1 17.79511156 -5.252526858 24.93017003 0.831973167 0.592201875 0.57541028 0.099479285 451.0337317 1261632.325 0.025643335 0.043581491 5.59E-06 5.252526858 -0.239771292 S(ph)RS(ph)HS(ph)PMSNR ddPTM_HeLa_A485_30min_R1 4 SRSHSPMSNR 10 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(1)RS(1)HS(0.982)PMS(0.019)NR;S(1)RS(1)HS(0.991)PMS(0.009)NR;S(1)RS(1)HS(0.998)PMS(0.002)NR;S(1)RS(1)HS(0.996)PMS(0.004)NR ;;; 91.616 0.0057565 13384110000 2661970 3892650 3576310 3521660 5387830 3917070 4531990 5326650 3805450 4605930 TRUE FALSE FALSE 3254116.043 4347861.556 4899335.892 3714039.368 4851398.727 4122161.728 3563693.314 4020280.736 4569168.909 3457756.417 0.941106212 1.257422742 1.416911807 1.074118278 1.403048145 1.192149253 1.030637467 1.162684773 1.321425907 1 21.72140481 -6.5286889 24.89711532 1.137836849 1.231073592 0.066493443 0.154380855 432.4071084 1852882.336 0.058143611 0.045169284 2.96E-07 6.5286889 0.093236743 S(ph)RS(ph)HS(ph)PMSNR ddPTM_HeLa_A486_30min_R1 4 SRSHSPMSNR 10 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(1)RS(1)HS(0.958)PMS(0.042)NR;S(1)RS(0.999)HS(0.884)PMS(0.117)NR;S(1)RS(1)HS(0.997)PMS(0.003)NR;S(1)RS(1)HS(0.99)PMS(0.01)NR ;;; 97.823 0.0039097 13158050000 2088810 2330610 2496710 1026026 3590670 2833640 2852500 3026670 2484910 2629540 TRUE FALSE FALSE 1942395.206 2145923.976 3463502.976 2388640.38 3140294.687 2484054.307 2138774.329 2337563.313 2700304 1971086.069 0.985444135 1.088701305 1.757154612 1.211839715 1.593179891 1.260246494 1.085074043 1.185926556 1.369957427 1 20.91055934 -6.523759149 24.97037294 1.17529434 1.341004044 0.103668355 0.228125287 75.77702694 2149068.478 0.088409738 0.069107263 2.99E-07 6.523759149 0.165709704 S(ph)RS(ph)HSDNDRFK ddPTM_HeLa_A485_30min_R1 2 SRSHSDNDRFK 11 2 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.991)RS(0.929)HS(0.08)DNDRFK;S(0.998)RS(0.986)HS(0.016)DNDRFK ; 61.265 0.017706 977030000 243679 340100 320270 242953 466840 389740 447420 610660 325470 393600 TRUE FALSE FALSE 297884.5529 379871.7365 438751.2005 256224.9072 420359.7704 410146.1837 351825.0619 460894.6775 390788.8436 295482.7637 1.008128356 1.285596939 1.484862247 0.867139944 1.422620275 1.388054513 1.190678798 1.559802243 1.322543619 1 18.17271445 S(ph)RS(ph)HSDNDRFK ddPTM_HeLa_A486_30min_R1 1 SRSHSDNDRFK 11 2 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(1)RS(0.958)HS(0.042)DNDRFK 94.007 0.0014422 744080000 211990 186880 172540 127730 276800 244800 272500 245980 158630 263640 TRUE FALSE FALSE 197130.5957 172070.9482 239352.1088 297361.8951 242081.1629 214599.0649 204317.6178 189975.7237 172380.1761 197622.828 0.997509234 0.870703805 1.211156177 1.504694059 1.224965584 1.085902206 1.033876602 0.96130455 0.872268542 1 17.59239008 -6.865046587 1.995465969 0.939573256 1.164288626 0.262649196 0.157131899 0.524164639 4.233303423 0.097577536 0.057159726 1.36E-07 6.865046587 0.22471537 S(ph)RS(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 1 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.902)RS(0.973)HS(0.125)DNDRPNCSWNTQYSSAYYTSR 207.33 1.07E-28 1657200000 89022 133300 118030 118040 177490 142680 139090 180320 125370 136370 TRUE FALSE FALSE 108824.6368 148888.2754 161694.2086 124488.2263 159818.4724 150150.5042 109372.2852 136096.2373 150530.609 102375.4687 1.062995248 1.45433547 1.579423378 1.215996643 1.561101252 1.466664877 1.068344659 1.329383289 1.470377728 1 16.64351053 -10.10133753 4.743726814 0.999988044 1.361797565 0.265270535 0.177802995 3.70E-05 7.02E-06 0.171733773 0.041649287 7.92E-11 10.10133753 0.361809521 S(ph)RS(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A486_30min_R1 2 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.901)RS(0.957)HS(0.141)DNDRPNCSWNTQYSSAYYTSR;S(0.774)RS(0.839)HS(0.368)DNDRPNCS(0.018)WNTQYSSAYYTSR ; 342.64 1.97E-124 2200910000 218118 234926 179134 83812.4 261583 219481 259279 262830 207181 249891 TRUE FALSE FALSE 202829.0546 216309.6082 248499.4822 195119.5028 228772.821 192403.6657 194404.6518 202989.3465 225139.6159 187316.6671 1.082813706 1.15478036 1.326627716 1.041655854 1.221315885 1.027157213 1.037839584 1.083669434 1.201919826 1 17.51511975 -6.264498811 24.99566077 1.0733292 1.166924694 0.227800106 0.087629272 450.3678849 3679503.406 0.030116241 0.027691389 5.44E-07 6.264498811 0.093595494 S(ph)RS(ph)HTSEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A486_30min_R1 1 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.568)RS(0.638)HT(0.607)S(0.178)EGAHLDIT(0.009)PNSGAAGNSAGPK 71.709 0.01052 739020000 207390 205390 149310 7453.5 219580 175480 188210 179030 166590 83986 TRUE FALSE FALSE 192853.032 189114.1484 207126.8307 17352.12468 192038.2289 153831.0617 141117.8673 138268.7772 181030.1553 62955.35894 3.063329877 3.003940436 3.290058768 0.275625856 3.050387324 2.443494316 2.241554487 2.196298767 2.875532097 1 15.94204157 -10.9357452 2.597393877 0.002208979 2.465353701 0.22841479 0.821958809 21660786.44 9686075.994 130662040.4 0.20935679 1.16E-11 10.9357452 2.463144722 S(ph)RS(ph)IDKDR ddPTM_HeLa_A485_30min_R1 1 SRSIDKDR 8 2 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 2 0 S(1)RS(1)IDKDR 78.864 0.036763 2135200000 3033600 2220000 1252100 6370700 2610200 2727400 4838200 5054100 2177100 8395600 TRUE FALSE FALSE 3708413.854 2479609.689 1715303.894 6718715.21 2350319.323 2870202.447 3804479.046 3814574.05 2614024 6302731.43 0.588382021 0.393418269 0.272152465 1.066000556 0.372904882 0.455390251 0.603623855 0.605225543 0.414744628 1 22.58754576 -10.26212182 4.420153886 1.000256338 0.531889507 0.315712013 0.207479829 0.000515228 8.60E-05 0.197484446 0.047871133 5.47E-11 10.26212182 -0.468366831 S(ph)RS(ph)IEDDEEGHLICQSGDVLR ddPTM_HeLa_A485_30min_R1 1 SRSIEDDEEGHLICQSGDVLR 21 1 A0A087WX74;B7ZL31;Q9HAZ1 A0A087WX74 CLK4 Dual specificity protein kinase CLK4 2 0 S(1)RS(1)IEDDEEGHLICQSGDVLR 43.696 0.0073294 0 47483 53167 39639 67920 74977 48659 69985 72529 39509 86155 TRUE FALSE FALSE 58045.42954 59384.41816 54303.11562 71630.29762 67512.02662 51206.71 55032.13303 54741.14903 47438.0939 64678.14407 0.897450451 0.918152786 0.839589886 1.107488452 1.04381515 0.791715822 0.850861351 0.846362397 0.733448595 1 15.98099066 -6.272974911 24.97002961 0.835274264 0.960262296 0.275256573 0.094182416 999.2421507 2162972.967 0.033964589 0.030204766 5.33E-07 6.272974911 0.124988032 S(ph)RS(ph)KS(ph)PFRK ddPTM_HeLa_A485_30min_R1 1 SRSKSPFRK 9 3 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 3 0 S(1)RS(1)KS(1)PFRK 51.009 0.036662 360530000 177600 145280 95833 472220 268640 199870 406380 330970 129820 686600 TRUE FALSE FALSE 217106.5073 162269.2322 131285.6146 498016.1829 241893.2583 210334.8841 319553.5932 249799.0886 155873.6832 515443.2559 0.421203507 0.314814929 0.254704302 0.966190123 0.469291732 0.408066032 0.619958821 0.484629657 0.302407067 1 18.97545409 -10.59108837 2.740369647 1.039539961 0.477689825 0.401830636 0.193392014 36030892.67 34924790.13 10296606.63 0.052270288 2.56E-11 10.59108837 -0.561850136 S(ph)RS(ph)KS(ph)PPKS(ph)PEEEGAVS(ph)S ddPTM_HeLa_A485_30min_R1 1 SRSKSPPKSPEEEGAVSS 18 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 5 0 S(1)RS(1)KS(1)PPKS(1)PEEEGAVS(0.53)S(0.47) 70.983 0.0020654 827350000 723300 488180 294760 2679000 888510 695970 1684800 1037700 432380 3828100 TRUE FALSE FALSE 884195.5896 545268.4044 403803.99 2825346.986 800046.8247 732409.913 1324828.716 783202.4479 519154.7 2873825.121 0.307672023 0.189736112 0.140510982 0.983131147 0.278390922 0.254855422 0.460998377 0.272529613 0.180649371 1 21.45454084 -10.59285876 2.912994092 1.042548367 0.346634542 0.422951247 0.230857609 75894440.22 79615633.72 24849014.12 0.06001203 2.55E-11 10.59285876 -0.695913825 S(ph)RS(ph)KS(ph)PPKS(ph)PEEEGAVS(ph)S ddPTM_HeLa_A486_30min_R1 1 SRSKSPPKSPEEEGAVSS 18 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 5 0 S(1)RS(1)KS(1)PPKS(0.979)PEEEGAVS(0.538)S(0.483) 43.156 0.021713 488150000 436020 346850 93695 961080 219650 483440 891770 648100 241280 1910300 TRUE FALSE FALSE 405457.2496 319364.3428 129976.2132 2237442.81 192099.4488 423798.0881 668639.7138 500541.7779 262194.3447 1431948.446 0.283150731 0.223027822 0.09076878 1.562516316 0.134152489 0.29595904 0.466943985 0.349552932 0.183103201 1 20.44954812 -10.19657211 3.693255008 1.000606482 0.408542567 0.166135389 0.403540928 553983518.7 931136913.2 4102798.207 0.102068887 6.36E-11 10.19657211 -0.592063915 S(ph)RS(ph)KS(ph)PPKS(ph)PEEEGAVSS ddPTM_HeLa_A485_30min_R1 1 SRSKSPPKSPEEEGAVSS 18 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(0.999)RS(0.989)KS(0.951)PPKS(0.894)PEEEGAVS(0.087)S(0.08) 44.931 0.019817 758510000 409810 281390 151070 1544600 414270 354270 956340 605390 214380 2174300 TRUE FALSE FALSE 500970.8207 314296.1127 206957.0795 1628977.587 373023.8242 372819.0294 752010.1464 456917.1533 257404.0996 1632287.025 0.306913437 0.192549538 0.126789637 0.997972515 0.228528328 0.228402863 0.460709504 0.279924515 0.157695366 1 20.63846334 -11.16004233 2.458234602 2.640817209 0.336862764 0.410843239 0.240229253 22034279.39 5321556.701 201464076.7 0.062720209 6.92E-12 11.16004233 -2.303954446 S(ph)RS(ph)KS(ph)PPKS(ph)PEEEGAVSS ddPTM_HeLa_A486_30min_R1 2 SRSKSPPKSPEEEGAVSS 18 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(1)RS(1)KS(1)PPKS(0.999)PEEEGAVS(0.001)S;S(1)RS(0.999)KS(0.994)PPKS(0.983)PEEEGAVS(0.013)S(0.012) ; 99.423 0.00011892 1876580000 1103700 879260 216700 2429600 549670 1334740 2232200 1725650 574520 5632700 TRUE FALSE FALSE 1026336.33 809584.2354 300612.0434 5656231.585 480725.2631 1170073.349 1673679.95 1332757.166 624319.8562 4222235.257 0.243078907 0.191743043 0.071197369 1.339629661 0.113855632 0.27712178 0.396396659 0.315652038 0.147864773 1 22.00957554 -10.13212998 4.373821327 1.000100954 0.352800464 0.243760133 0.346296354 940786533.6 1624468772 1315234.088 0.086474909 7.38E-11 10.13212998 -0.64730049 S(ph)RS(ph)KS(ph)PPKS(ph)PEEEGAVSS(ph) ddPTM_HeLa_A486_30min_R1 1 SRSKSPPKSPEEEGAVSS 18 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 5 0 S(1)RS(1)KS(1)PPKS(1)PEEEGAVS(0.127)S(0.873) 111.95 3.09E-05 623520000 873380 744690 196690 2241400 398390 1142400 1928800 1358800 474820 4626500 TRUE FALSE FALSE 812160.5721 685678.0523 272853.6355 5218092.474 348420.2114 1001462.303 1446193.839 1049430.902 515977.7799 3467994.287 0.234187402 0.197716027 0.078677649 1.504642754 0.100467354 0.288772766 0.417011598 0.302604565 0.148782765 1 21.72567009 -10.49442782 2.74461376 1.025627763 0.373778859 0.189391064 0.394449632 32074615.14 33536963.39 6200858.252 0.102190615 3.20E-11 10.49442782 -0.651848903 S(ph)RS(ph)LER ddPTM_HeLa_A486_30min_R1 1 SRSLER 6 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)RS(1)LER 70.399 0.031176 244420000 23204 14443 22581 17596 20413 33831 26133 30851 21284 46446 TRUE FALSE FALSE 21577.51943 13298.48408 31324.96794 40964.37725 17852.6112 29657.27519 19594.24699 23826.90077 23128.91426 34815.61929 0.619765492 0.381968908 0.899738927 1.17660918 0.51277592 0.851838221 0.562800473 0.684373889 0.664325803 1 15.08744707 -4.761360512 24.99999999 0.780206607 0.500867186 0.256348631 0.198628755 2.879780765 911234.5437 0.052431667 0.121953074 1.73E-05 4.761360512 -0.279339422 S(ph)RS(ph)LS(ph)RDR ddPTM_HeLa_A485_30min_R1 1 SRSLSRDR 8 2 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 3 0 S(1)RS(1)LS(1)RDR 75.102 0.011402 1121200000 530730 618530 686910 1076000 1441000 777450 1267400 1555600 776240 1546000 TRUE FALSE FALSE 648789.0575 690861.703 941026.5937 1134779.155 1297528.98 818156.0798 996609.6363 1174086.661 932024.2479 1160610.652 0.559006637 0.595257076 0.810802996 0.977743185 1.117970939 0.70493587 0.858694201 1.011611137 0.803046436 1 20.14645264 -4.84872488 2.939367285 0.920671429 0.564229666 0.608240534 0.110345271 0.172177326 2.950440617 0.030764093 0.081316347 1.42E-05 4.84872488 -0.356441763 S(ph)RS(ph)LSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SRSLSSPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.989)RS(0.863)LS(0.224)S(0.924)PR;S(0.999)RS(0.867)LS(0.136)S(0.997)PR ; 106.54 0.0085558 566510000 667560 850300 729440 987040 1198130 850350 1230670 1305960 796100 1369810 TRUE FALSE FALSE 816056.4189 949735.1884 999290.2105 1040959.496 1078839.97 894873.0111 967727.3009 985671.2623 955869.9677 1028341.576 0.793565521 0.923560041 0.971749303 1.012270164 1.049106634 0.870209891 0.941056282 0.9585057 0.929525743 1 19.97188812 -4.287565217 2.607056534 0.965043892 0.763839791 0.556971947 0.046366829 0.356803466 3.296344332 0.012799454 0.153067481 5.16E-05 4.287565217 -0.201204101 S(ph)RS(ph)LSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SRSLSSPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.999)LS(0.005)S(0.996)PR;S(1)RS(0.999)LS(0.016)S(0.985)PR;S(0.998)RS(0.991)LS(0.011)S(1)PR ;; 105.43 0.00064092 1032080000 2042300 1935820 1433120 1135570 2427910 2341010 2643100 2556640 1722700 2843740 TRUE FALSE FALSE 1899145.316 1782418.573 1988062.444 2643664.349 2123378.888 2052199.988 1981768.424 1974548.883 1872025.023 2131648.994 0.890927785 0.83616889 0.932640622 1.240196841 0.996120325 0.962728851 0.929687969 0.926301135 0.878205102 1 21.02353847 -9.802829557 13.73574069 0.999999964 0.958905212 0.015198183 0.10456037 0 0 0.110304927 0.026752874 1.57E-10 9.802829557 -0.041094753 S(ph)RS(ph)PATAK ddPTM_HeLa_A486_30min_R1 2 SRSPATAK 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RS(0.999)PAT(0.002)AK;S(1)RS(0.999)PAT(0.001)AK ; 60.255 0.0056217 293990000 977970 592540 370860 446820 447470 1041780 968530 672740 912090 1864880 TRUE FALSE FALSE 909419.3532 545584.9724 514466.924 1040219.541 391344.1401 913255.7756 726193.5499 519571.7878 991150.6956 1397901.91 0.650560205 0.390288452 0.368027914 0.744129137 0.279951073 0.65330462 0.519488202 0.371679718 0.709027356 1 20.4148317 -8.026699149 4.918504443 0.999716804 0.497317944 0.550729161 0.141722005 0.123649391 10.74129759 0.12843849 0.03349312 9.40E-09 8.026699149 -0.50239886 S(ph)RS(ph)PAYSR ddPTM_HeLa_A485_30min_R1 1 SRSPAYSR 8 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(1)RS(0.994)PAY(0.005)S(0.001)R 74.537 0.014685 1411200000 47812 53138 63122 81773 78639 73107 64272 89588 54409 95998 TRUE FALSE FALSE 58447.61445 59352.02686 86473.45453 86240.05193 70809.42504 76934.76948 50539.76215 67616.40253 65328.38723 72067.46531 0.811012489 0.823562014 1.199895877 1.196657209 0.982543575 1.067538162 0.701284025 0.938237556 0.906489315 1 16.13706048 -6.696166091 25 0.881340166 1.02028594 0.160966767 0.141382555 109.6394605 41991.37121 0.058059378 0.044972583 2.01E-07 6.696166091 0.138945774 S(ph)RS(ph)PAYSR ddPTM_HeLa_A486_30min_R1 2 SRSPAYSR 8 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(1)RS(0.988)PAY(0.008)S(0.004)R;S(1)RS(0.994)PAY(0.005)S(0.001)R ; 69.03 0.019311 3522900000 152505 150230 112782 70552 143656 135778 154421 150882 124584 179097 TRUE FALSE FALSE 141815.187 138325.2277 156454.2108 164248.6215 125637.3249 119027.0908 115783.2325 116529.4623 135383.0414 134249.9455 1.056351915 1.030355932 1.165394967 1.223453916 0.935846376 0.886608113 0.862445285 0.868003796 1.008440197 1 17.03456198 -5.864274554 7.338809861 0.91309052 1.115325717 0.650951563 0.068552765 0.142838593 9.023722828 0.022461895 0.025548143 1.37E-06 5.864274554 0.202235196 S(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_A485_30min_R1 3 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(1)RS(0.917)PES(0.084)QVIGENTK;S(0.993)RS(0.99)PES(0.017)QVIGENTK;S(0.997)RS(1)PES(0.004)QVIGENTK ;; 199.97 9.66E-22 4623200000 3404640 2041080 1871360 7184100 3705690 2450420 4249400 2840830 2753010 8780000 TRUE FALSE FALSE 4161990.422 2279766.551 2563653.938 7576549.192 3336738.492 2578720.202 3341480.976 2144111.988 3305513.855 6591307.584 0.631436232 0.345874703 0.388944668 1.149475896 0.506233164 0.391230445 0.50695267 0.325293875 0.501495919 1 22.65213326 -10.45218638 5.846592402 1.00029766 0.52514171 0.282280085 0.226030281 0.000912016 8.55E-05 0.227594775 0.055166155 3.53E-11 10.45218638 -0.475155951 S(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_A486_30min_R1 3 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.999)RS(0.999)PES(0.002)QVIGENTK;S(0.937)RS(0.981)PES(0.082)QVIGENTK;S(0.996)RS(0.998)PES(0.006)QVIGENTK ;; 199.97 9.66E-22 3853020000 2301060 2435910 1191380 1333060 1935630 3070990 3675220 3254410 2101290 3832580 TRUE FALSE FALSE 2139767.577 2242879.62 1652714.242 3103431.049 1692845.236 2692122.477 2755641.083 2513451.886 2283431.509 2872877.022 0.744816976 0.780708538 0.575281932 1.080251965 0.589250853 0.937082394 0.959192149 0.874890177 0.794823966 1 21.45406481 -1.000000008 0.10494617 1.067015432 0.00560334 0.204215008 0.142544303 187.8802667 1.390065162 1.498324765 28.78323837 0.099999998 1.000000008 -1.061412092 S(ph)RS(ph)PESQVIGENTKQP ddPTM_HeLa_A485_30min_R1 3 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(1)RS(0.999)PES(0.001)QVIGENTKQP;S(0.963)RS(0.972)PES(0.065)QVIGENTKQP;S(0.995)RS(0.983)PES(0.021)QVIGENTKQP ;; 146.19 2.66E-07 5145600000 1077770 1224500 894100 1391160 1638250 1435430 2085400 2324550 1118900 1941860 TRUE FALSE FALSE 1317516.218 1367694.623 1224864.797 1467155.548 1475140.078 1510586.895 1639837.254 1754450.468 1343452.967 1457790.039 0.903776389 0.938197262 0.840220309 1.006424457 1.011901603 1.036217051 1.124878899 1.203500107 0.921568217 1 20.47535152 -5.675375724 1.565348384 1.072621615 0.89843872 0.438963062 0.076107455 0.332924555 1.686160112 0.027126669 0.039808549 2.11E-06 5.675375724 -0.174182895 S(ph)RS(ph)PESQVIGENTKQP ddPTM_HeLa_A486_30min_R1 3 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.999)RS(1)PES(0.002)QVIGENTKQP;S(0.998)RS(0.999)PES(0.002)QVIGENTKQP;S(1)RS(1)PESQVIGENTKQP ;; 179.6 4.86E-17 5672290000 1585570 1354510 687645 855172 1426990 1532660 2153470 2009610 1079214 2532010 TRUE FALSE FALSE 1474429.731 1247173.695 953919.5598 1990883.634 1248003.608 1343575.992 1614649.029 1552065.672 1172761.138 1897978.215 0.776842284 0.657106433 0.502597739 1.048949676 0.657543695 0.707898532 0.850720528 0.817746832 0.61790021 1 20.856032 -14 0.250828498 2.551467379 0.717587116 0.223943652 0.142877739 285.258943 2.829567346 227.5674042 0.204775237 1.00E-14 14 -1.833880263 S(ph)RS(ph)PGSYK ddPTM_HeLa_A485_30min_R1 1 SRSPGSYK 8 1 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 2 0 S(0.995)RS(0.999)PGS(0.006)YK 74.698 0.014549 255970000 208850 180980 148230 323680 263720 223930 351000 326230 189350 403230 TRUE FALSE FALSE 255307.962 202144.0367 203066.4454 341361.8188 237463.1108 235654.6285 276005.9826 246221.581 227350.8082 302712.1819 0.843401677 0.667776352 0.6708235 1.127677838 0.784451783 0.77847752 0.911776926 0.813385109 0.751046115 1 18.20758721 S(ph)RS(ph)PGSYK ddPTM_HeLa_A486_30min_R1 1 SRSPGSYK 8 1 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 2 0 S(1)RS(1)PGSYK 78.342 0.011489 334900000 201330 183790 85407 96029 172920 218830 262600 237520 155200 292810 TRUE FALSE FALSE 187217.8067 169225.811 118478.8777 223560.365 151230.7612 191832.9795 196894.7025 183441.881 168652.861 219488.4701 0.852973309 0.771000914 0.539795451 1.018551749 0.689014603 0.874000258 0.897061711 0.835770011 0.768390526 1 17.74378563 -5.267909621 24.99953316 0.856008873 0.726230994 0.244176394 0.117457451 799.5531074 3089290.909 0.031988264 0.048751412 5.40E-06 5.267909621 -0.129777878 S(ph)RS(ph)PHEAGFCVYLK ddPTM_HeLa_A485_30min_R1 6 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 2 0 S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK ;;;;; 156.39 2.30E-08 8324830000 4009900 3761470 2773270 5989590 5358050 4144490 6443270 6044420 3424010 8055370 TRUE FALSE FALSE 4901888.421 4201341.196 3799217.978 6316786.135 4824583.729 4361489.088 5066612.728 4562016.518 4111177.4 6047314.507 0.810589298 0.694744947 0.628248783 1.044560545 0.797805989 0.721227428 0.837828547 0.754387177 0.679835222 1 22.52786318 -11.09802775 2.475417258 1.391611892 0.776073154 0.278285365 0.108981323 12307494.23 3840338.364 27146279.16 0.02811433 7.98E-12 11.09802775 -0.615538738 S(ph)RS(ph)PHEAGFCVYLK ddPTM_HeLa_A486_30min_R1 6 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 2 0 S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVY(0.001)LK;S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK ;;;;; 160.13 9.49E-12 8078270000 5855340 5857470 3495480 3544730 5985290 7246120 8258730 7893410 5857260 9284760 TRUE FALSE FALSE 5444910.903 5393302.745 4849023.468 8252310.581 5234559.118 6352167.388 6192308.402 6096252.855 6364972.013 6959795.662 0.782337753 0.77492257 0.696719229 1.185711619 0.752113908 0.912694524 0.889725604 0.875924115 0.914534323 1 22.73061352 S(ph)RS(ph)PLAIR ddPTM_HeLa_A485_30min_R1 9 SRSPLAIR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR ;;;;;;;; 100.22 0.0024226 35648473000 476010 506534 427541 653787 692777 532060 765337 739934 458418 913531 TRUE FALSE FALSE 581896.7823 565768.745 585706.2074 689501.7283 623801.6894 559917.8389 601816.4977 558464.0263 550418.2877 685804.534 0.848487803 0.824970844 0.854042483 1.005391032 0.909591084 0.816439395 0.877533565 0.814319531 0.802587706 1 19.38743792 -6.246550172 24.41706468 0.851530852 0.889547447 0.023276017 0.06976308 1926.780458 3159759.792 0.023601093 0.02350507 5.67E-07 6.246550172 0.038016596 S(ph)RS(ph)PLAIR ddPTM_HeLa_A486_30min_R1 9 SRSPLAIR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR;S(1)RS(1)PLAIR ;;;;;;;; 102.87 0.0019209 58391710000 768697 720311 488880 414166.6 754332 675742 941313 913369 533284 990877 TRUE FALSE FALSE 714815.3099 663230.933 678187.4287 964200.7756 659716.6467 592375.8225 705786.5312 705414.8174 579509.4865 742754.9497 0.962383772 0.89293371 0.913070225 1.298141165 0.888202289 0.797538707 0.950227974 0.949727521 0.780216257 1 19.50252679 -5.913255736 23.11566096 0.889646987 1.011994234 0.194027288 0.12174816 22.47284338 5981.841354 0.038756695 0.043945957 1.22E-06 5.913255736 0.122347247 S(ph)RS(ph)PLDKDTYPPSASVVGASVGGHR ddPTM_HeLa_A486_30min_R1 1 SRSPLDKDTYPPSASVVGASVGGHR 25 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 S(0.823)RS(0.836)PLDKDT(0.115)Y(0.225)PPSASVVGASVGGHR 89.266 0.0022813 2160100000 157840 178570 127290 513780 175630 228080 298440 232470 193660 423420 TRUE FALSE FALSE 146776.2311 164419.4629 176580.0969 1196105.805 153600.8477 199941.8085 223767.1554 179541.6558 210446.6047 317392.876 0.46244337 0.518031359 0.556345496 3.768533875 0.48394548 0.629950524 0.705016314 0.565676388 0.663047663 1 18.27591022 S(ph)RS(ph)PLDKDTYPPSASVVGASVGGHRHPPGGGGGQR ddPTM_HeLa_A485_30min_R1 3 SRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQR 35 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 S(0.992)RS(0.992)PLDKDT(0.007)Y(0.009)PPSASVVGASVGGHRHPPGGGGGQR;S(1)RS(1)PLDKDTYPPSASVVGASVGGHRHPPGGGGGQR;S(0.601)RS(0.751)PLDKDT(0.568)Y(0.079)PPSASVVGASVGGHRHPPGGGGGQR ;; 169.96 8.72E-15 897710000 167384 242578 188603 106746 385720 249815 391377 395380 191371 252167 TRUE FALSE FALSE 204617.9933 270945.387 258375.0981 112577.2637 347316.3625 262894.9271 307756.1067 298412.4351 229777.4043 189306.4077 1.080882553 1.431253122 1.364851308 0.594682795 1.834678322 1.38872704 1.625703591 1.576346193 1.213785667 1 17.53036372 -5.787926801 24.99985545 1.475424726 1.157935632 0.206072385 0.300755862 350.2774078 330603.5003 0.091076551 0.103300633 1.63E-06 5.787926801 -0.317489093 S(ph)RS(ph)PLDKDTYPPSASVVGASVGGHRHPPGGGGGQR ddPTM_HeLa_A486_30min_R1 2 SRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQR 35 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 2 0 S(1)RS(1)PLDKDTYPPSASVVGASVGGHRHPPGGGGGQR;S(0.999)RS(0.999)PLDKDT(0.001)Y(0.001)PPSASVVGASVGGHRHPPGGGGGQR ; 204.16 1.20E-29 749920000 260615 209192 135814 40359.5 276129 192786 241766 245154 190490 155086 TRUE FALSE FALSE 242347.2343 192614.8641 188404.818 93958.95566 241494.326 169002.0234 181273.5897 189337.7859 207001.8266 116251.4562 2.084681279 1.656881302 1.620666306 0.808238957 2.077344525 1.453762637 1.559323175 1.628691735 1.780638569 1 16.82688926 -10.95044389 2.591129512 0.544500743 1.612223357 0.236424721 0.338312555 17645503.5 7222832.97 48316795.64 0.084420148 1.12E-11 10.95044389 1.067722614 S(ph)RS(ph)PLELEPEAK ddPTM_HeLa_A485_30min_R1 4 SRSPLELEPEAK 12 1 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 2 0 S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK ;;; 115.53 0.00029428 1753490000 2366290 2030880 1398570 4650190 2826180 2596670 4541600 4054660 1870920 6660470 TRUE FALSE FALSE 2892663.047 2268373.75 1915959.242 4904218.105 2544795.596 2732627.626 3571250.059 3060248.278 2246396.483 5000137.406 0.578516711 0.453662283 0.383181318 0.980816667 0.508945133 0.546510506 0.714230384 0.612032836 0.44926695 1 22.25353631 -10.71539585 2.884127433 1.06272546 0.584731396 0.380024864 0.160559671 50975097.41 44687606.69 23068360.07 0.043226187 1.93E-11 10.71539585 -0.477994063 S(ph)RS(ph)PLELEPEAK ddPTM_HeLa_A486_30min_R1 5 SRSPLELEPEAK 12 1 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 2 0 S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK;S(1)RS(1)PLELEPEAK ;;;; 165.16 2.61E-10 1737120000 3883980 4040290 1773334 3105340 3321350 5176770 7210610 6291540 3569490 8700600 TRUE FALSE FALSE 3611733.059 3720122.706 2460016.416 7229388.455 2904755.313 4538112.751 5406439.112 4859093.685 3878896.267 6521913.129 0.553784294 0.570403597 0.377192454 1.108476656 0.445383932 0.695825391 0.828965214 0.745041154 0.594748227 1 22.63686379 -14 0.049005353 2.297439982 1.54E-08 0.248884294 0.192465913 845.0367895 3.058956099 146.6900049 33.71421055 1.00E-14 14 -2.297439967 S(ph)RS(ph)PLGFYVHLK ddPTM_HeLa_A485_30min_R1 4 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 S(0.999)RS(1)PLGFY(0.001)VHLK;S(0.999)RS(0.999)PLGFY(0.002)VHLK;S(1)RS(1)PLGFYVHLK;S(1)RS(1)PLGFY(0.001)VHLK ;;; 118.31 0.00020367 3767490000 2201370 2114880 1454290 3732290 2688370 2448060 3792920 3498040 1860210 4954870 TRUE FALSE FALSE 2691057.162 2362196.819 1992292.389 3936175.552 2420706.443 2576236.636 2982531.657 2640140.205 2233537.084 3719712.097 0.723458454 0.635048293 0.535603922 1.058193605 0.650777904 0.692590332 0.801817877 0.70977004 0.600459666 1 21.82675953 -10.80113103 2.426964955 1.093821312 0.714910652 0.290992091 0.134809009 22434575.3 14351359.67 12379555.56 0.035001176 1.58E-11 10.80113103 -0.37891066 S(ph)RS(ph)PLGFYVHLK ddPTM_HeLa_A486_30min_R1 4 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 0 S(1)RS(1)PLGFYVHLK;S(1)RS(1)PLGFYVHLK;S(1)RS(0.997)PLGFY(0.003)VHLK;S(1)RS(1)PLGFYVHLK ;;; 111.65 0.00042078 4753350000 1858030 1789070 868577 1078197 1457340 1986970 2426410 2172990 1516360 3071130 TRUE FALSE FALSE 1727791.692 1647297.578 1204913.276 2510097.105 1274546.828 1741837.843 1819296.554 1678247.613 1647799.306 2302099.058 0.750528821 0.715563291 0.523397667 1.090351476 0.553645519 0.756630275 0.790277268 0.729007558 0.715781234 1 21.13451848 -11.23678121 1.977501773 1.775081138 0.736306511 0.231112027 0.144387009 8365729.756 1349450.718 28954424.8 0.034634368 5.80E-12 11.23678121 -1.038774627 S(ph)RS(ph)PLLNDR ddPTM_HeLa_A485_30min_R1 2 SRSPLLNDR 9 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)RS(1)PLLNDR;S(1)RS(1)PLLNDR ; 96.464 0.00091569 977840000 398963 356648 323296 609580 488537 367058 497680 443805 372133 768770 TRUE FALSE FALSE 487710.9429 398354.8812 442896.6439 642879.8119 439896.5409 386276.5893 391346.6023 334961.1279 446816.6797 577129.7872 0.84506285 0.690234485 0.767412554 1.11392589 0.762214238 0.669306277 0.678091152 0.580391335 0.774204849 1 19.13853627 -5.990861798 24.95049005 0.710887956 0.848980883 0.106767217 0.144739026 367.9773346 1004699.401 0.045112865 0.051085319 1.02E-06 5.990861798 0.138092927 S(ph)RS(ph)PLLNDR ddPTM_HeLa_A486_30min_R1 2 SRSPLLNDR 9 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)RS(1)PLLNDR;S(1)RS(1)PLLNDR ; 95.428 0.0029481 2730700000 1143420 1137700 674310 469890 1057950 1204350 1285930 1235020 965990 1437750 TRUE FALSE FALSE 1063272.163 1047544.509 935420.8906 1093927.667 925252.046 1055769.542 964176.7128 953832.9063 1049722.791 1077728.042 0.98658671 0.971993367 0.867956344 1.015031274 0.858520898 0.979625194 0.894638235 0.885040446 0.974014547 1 20.03956174 -4.546284993 24.98828607 0.929909544 0.982938459 0.099105661 0.053647392 371.0902872 396171.1772 0.012545569 0.033196301 2.84E-05 4.546284993 0.053028915 S(ph)RS(ph)PNRFDAHDPR ddPTM_HeLa_A485_30min_R1 1 SRSPNRFDAHDPR 13 2 Q96T58;A0A669KB49;F6WRY4 Q96T58 SPEN Msx2-interacting protein 2 0 S(1)RS(1)PNRFDAHDPR 54.768 0.027686 191720000 97190 126770 101840 142140 160750 135910 168740 172760 104330 200530 TRUE FALSE FALSE 118809.5802 141594.6487 139514.8539 149904.7483 144745.1656 143026.0374 132687.3205 130390.3391 125268.074 150541.5615 0.78921448 0.940568487 0.926753068 0.995769851 0.961496374 0.95007675 0.881399922 0.866141801 0.832116213 1 17.19980232 -9.531451137 17.1693798 1 0.910376973 0.178404058 0.060218294 0 0 0.061704203 0.014965468 2.94E-10 9.531451137 -0.089623027 S(ph)RS(ph)PPPVSK ddPTM_HeLa_A485_30min_R1 4 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVS(0.001)K ;;; 78.486 0.010158 81917300000 2147660 2136150 1407810 3426510 2150990 2149350 3153060 2823640 1695090 3953320 TRUE FALSE FALSE 2625399.558 2385954.16 1928617.503 3613691.565 1936829.883 2261886.642 2479382.973 2131137.863 2035279.015 2967830.079 0.884619229 0.803938937 0.649840945 1.217620776 0.652608078 0.76213482 0.83541945 0.718079474 0.685780169 1 21.50097706 S(ph)RS(ph)PPPVSK ddPTM_HeLa_A486_30min_R1 6 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK;S(1)RS(1)PPPVSK ;;;;; 90.444 0.0038453 1.25E+11 24898960 23500010 9422600 10449810 14859700 24026800 28240670 24162510 16451190 38370430 TRUE FALSE FALSE 23153671.48 21637783.62 13071283.07 24327685.78 12995857.86 21062617.7 21174555.67 18661233.94 17877192.4 28762224.58 0.805002806 0.752298681 0.454460086 0.84582073 0.451837716 0.732301413 0.736193253 0.648810522 0.621551102 1 24.77767193 -10.5509015 3.02097346 1.014491341 0.669604451 0.37531758 0.126901208 77954775.07 88225568.51 9204019.02 0.0310703 2.81E-11 10.5509015 -0.34488689 S(ph)RS(ph)PPPVSKR ddPTM_HeLa_A485_30min_R1 1 SRSPPPVSKR 10 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.998)RS(0.994)PPPVS(0.008)KR 58.752 0.020922 586960000 261220 372060 218600 276290 307600 389520 500840 577940 223960 352880 TRUE FALSE FALSE 319327.4878 415569.1805 299469.2367 291383.0231 276974.264 409914.6649 393831.4425 436199.3088 268906.7177 264913.5103 1.205402803 1.568697573 1.130441541 1.099917565 1.045527137 1.547352811 1.486641591 1.64657253 1.015073627 1 18.0151619 -6.264580811 24.99313318 1.388758479 1.219389811 0.048578421 0.238033632 683.4880513 5437789.643 0.082432961 0.075854436 5.44E-07 6.264580811 -0.169368668 S(ph)RS(ph)PQAFR ddPTM_HeLa_A486_30min_R1 2 SRSPQAFR 8 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 2 0 S(1)RS(1)PQAFR;S(1)RS(1)PQAFR ; 73.082 0.015907 1405450000 89819 108143 88313 48408 94604 93286 129354 92237 120304 150779 TRUE FALSE FALSE 83523.15193 99573.35483 122510.1587 112696.2704 82737.88417 81777.32178 96988.26103 71236.64862 130732.0476 113022.957 0.738992804 0.881001148 1.083940484 0.997109555 0.732044944 0.723546118 0.858128858 0.630284771 1.156685784 1 16.78625631 -4.261709052 10.95705304 0.881677318 0.738799974 0.073856924 0.159691327 0.202247036 1369.817431 0.04034846 0.224241986 5.47E-05 4.261709052 -0.142877344 S(ph)RS(ph)PQRPGWSR ddPTM_HeLa_A485_30min_R1 2 SRSPQRPGWSR 11 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.997)RS(0.987)PQRPGWS(0.016)R;S(1)RS(0.985)PQRPGWS(0.015)R ; 68.173 0.0095278 2086620000 16162.4 20103.4 15724.8 16479.9 23095.7 20051.9 19013.9 17567.2 13991.7 17125 TRUE FALSE FALSE 19757.67012 22454.31775 21542.05788 17380.15521 20796.21101 21101.78648 14951.42494 13258.81666 16799.70585 12856.05266 1.536837989 1.746595035 1.675635473 1.351904481 1.617620242 1.641389238 1.162987219 1.031328745 1.306754592 1 13.65016012 -6.785655617 7.251436591 1.125363717 1.595777596 0.77561242 0.123801572 0.084110788 16.91042788 0.051873415 0.035784168 1.64E-07 6.785655617 0.470413879 S(ph)RS(ph)PQWR ddPTM_HeLa_A485_30min_R1 2 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RS(1)PQWR;S(1)RS(1)PQWR ; 104.07 0.0039945 7825100000 106976 139108 117970 176907 168255 132283 182205 156414 99785 215034 TRUE FALSE FALSE 130772.4421 155375.4705 161612.0121 186570.9815 151502.9414 139209.1333 143275.4133 118053.2213 119810.9342 161429.9812 0.8100877 0.962494509 1.001127615 1.155739349 0.9385056 0.862349932 0.887539057 0.731296754 0.742185146 1 17.30054902 -6.369419248 2.233965028 0.819179545 0.986527388 0.266761428 0.105989268 0.386801244 3.790031436 0.044671956 0.038312447 4.27E-07 6.369419248 0.167347842 S(ph)RS(ph)PQWR ddPTM_HeLa_A486_30min_R1 5 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR;S(1)RS(1)PQWR ;;;; 90.913 0.007279 15811530000 296382 330451 228793 137710.7 277591 287469 335330 341216 236270 370721 TRUE FALSE FALSE 275607.1523 304264.8593 317387.7769 320597.4691 242772.9483 252003.9976 251426.8872 263528.5655 256750.0738 277890.0486 0.991784894 1.094910958 1.142134375 1.153684598 0.873629515 0.906847866 0.904771108 0.948319549 0.923926838 1 18.08415465 -5.762771472 24.99999992 0.921621148 1.098899282 0.72519452 0.051016545 18.39703369 345269.1205 0.015936643 0.019072859 1.73E-06 5.762771472 0.177278134 S(ph)RS(ph)PRKPIDSLR ddPTM_HeLa_A485_30min_R1 1 SRSPRKPIDSLR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RS(0.996)PRKPIDS(0.005)LR 51.128 0.02919 176720000 98954 200620 222110 42121 310420 253580 335830 713660 175190 99831 TRUE FALSE FALSE 120965.9759 224080.7638 304277.7318 44421.96357 279513.4948 266857.0567 264077.177 538633.766 210349.0261 74944.96895 1.614063994 2.989937376 4.060015449 0.59272776 3.72958317 3.560706748 3.52361447 7.187057031 2.806713099 1 16.19354401 -5.969958405 24.98005285 3.957514264 2.446405432 0.112710292 1.66958028 381.5202126 317238.337 0.507558669 0.575510935 1.07E-06 5.969958405 -1.511108832 S(ph)RS(ph)PS(ph)GS(ph)PRR ddPTM_HeLa_A486_30min_R1 1 SRSPSGSPRR 10 2 Q16629;C9JAB2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 4 0 S(1)RS(1)PS(1)GS(1)PRR 59.171 0.012337 87528000 279510 329260 192210 170110 221830 393120 311290 220650 263490 437510 TRUE FALSE FALSE 259917.7924 303168.2385 266638.8596 396024.6769 194006.0129 344620.8514 233401.9495 170412.8118 286329.5254 327954.6483 0.792541877 0.924421227 0.813035769 1.207559274 0.591563541 1.050818621 0.711689713 0.519623102 0.873076588 1 18.3231368 -6.803192429 24.99456199 0.736065728 0.894382134 0.071739267 0.191837792 296.9792721 177777.6099 0.076050287 0.051273611 1.57E-07 6.803192429 0.158316406 S(ph)RS(ph)PS(ph)PAPEK ddPTM_HeLa_A485_30min_R1 1 SRSPSPAPEK 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)RS(1)PS(1)PAPEK 62.287 0.005705 0 588790 529880 463670 986870 683060 534480 785650 735080 501980 1167500 TRUE FALSE FALSE 719764.3042 591844.8567 635200.8279 1040780.209 615052.148 562464.5463 617789.4593 554800.4774 602722.7816 876463.7362 0.821214015 0.675264511 0.724731443 1.187476636 0.701742836 0.64174309 0.704865967 0.632998782 0.687675664 1 19.74133488 S(ph)RS(ph)PS(ph)PAPEKK ddPTM_HeLa_A485_30min_R1 1 SRSPSPAPEKK 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)RS(1)PS(1)PAPEKK 74.141 0.011322 2044600000 1374000 1053200 574540 2327000 1298100 1271900 2080600 1841200 924490 2855400 TRUE FALSE FALSE 1679641.56 1176362.578 787086.2546 2454118.118 1168856.606 1338494.717 1636062.813 1389642.813 1110026.663 2143601.33 0.783560607 0.548778619 0.367179402 1.144857527 0.545277048 0.624414017 0.763230919 0.648274842 0.517832606 1 21.03160519 -10.31960027 3.532865143 1.001336353 0.660947916 0.208566999 0.198469938 350987436.6 571008550.7 5017284.298 0.048452804 4.79E-11 10.31960027 -0.340388437 S(ph)RS(ph)PS(ph)PAPEKK ddPTM_HeLa_A486_30min_R1 4 SRSPSPAPEKK 11 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)RS(1)PS(1)PAPEKK;S(1)RS(1)PS(1)PAPEKK;S(1)RS(1)PS(1)PAPEKK;S(1)RS(1)PS(1)PAPEKK ;;; 112.67 0.00047786 5483310000 4375000 3276730 1344940 2702430 2331450 4855690 5279720 4377560 2751360 8206800 TRUE FALSE FALSE 4068335.093 3017069.981 1865736.787 6291393.613 2039017.801 4256644.337 3958678.213 3380885.149 2989850.1 6151763.863 0.661328228 0.490439823 0.303284851 1.022697515 0.331452547 0.691938838 0.643502953 0.549579799 0.486015095 1 22.5525687 -10.22045181 4.160952835 1.000240578 0.575694567 0.301767022 0.193677424 184112736.8 307913279.1 555083.9369 0.047452467 6.02E-11 10.22045181 -0.424546011 S(ph)RS(ph)PSS(ph)PELNNK ddPTM_HeLa_A485_30min_R1 2 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)PS(0.003)S(0.997)PELNNK;S(1)RS(1)PS(0.002)S(0.998)PELNNK ; 221.34 5.07E-22 2957300000 2504250 2195760 1505880 4174000 3361400 2555200 4464200 4378000 2096460 5198800 TRUE FALSE FALSE 3061311.773 2452535.031 2062967.677 4402015.051 3026727.213 2688986.321 3510387.201 3304288.636 2517200.292 3902834.837 0.784381584 0.628398365 0.528581855 1.127901957 0.77552019 0.688982863 0.899445492 0.846638091 0.644967158 1 21.89609098 -14 0.063500273 1.663374977 0.496889091 0.141383117 0.160317146 776.2806192 3.575942549 82.02739128 12.32007611 1.00E-14 14 -1.166485886 S(ph)RS(ph)PSS(ph)PELNNK ddPTM_HeLa_A486_30min_R1 4 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.998)RS(0.947)PS(0.057)S(0.998)PELNNK;S(1)RS(0.996)PS(0.018)S(0.985)PELNNK;S(0.761)RS(0.778)PS(0.472)S(0.989)PELNNK;S(1)RS(0.992)PS(0.02)S(0.988)PELNNK ;;; 221.34 5.07E-22 5331710000 6977880 6424070 3267870 4324460 6116680 8351060 10616800 9657580 5342780 11798670 TRUE FALSE FALSE 6488766.646 5915003.297 4533276.781 10067561.43 5349468.959 7320791.125 7960364.347 7458759.857 5805896.472 8844206.236 0.73367428 0.668799793 0.512570225 1.13832278 0.604855746 0.827749934 0.900065437 0.843349834 0.656463262 1 23.07630124 -12.77263368 0.033467654 2.068728659 1.78E-17 0.1605593 0.166118295 1777.874537 5.513886288 254.5001043 112.0696056 1.69E-13 12.77263368 -2.068728659 S(ph)RS(ph)PSSPELNNK ddPTM_HeLa_A486_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.907)RS(0.772)PS(0.294)S(0.027)PELNNK 118.08 0.00047804 0 437120 444770 217580 231760 441260 528010 626960 613280 329070 688940 TRUE FALSE FALSE 406480.1453 409524.8054 301832.803 539548.9925 385913.0562 462869.4946 470087.9767 473649.5318 357594.0526 516424.9398 0.787104018 0.792999667 0.584465969 1.044777181 0.747278116 0.896295781 0.910273576 0.917170135 0.692441486 1 18.97819915 -5.256414563 24.99293641 0.8789886 0.728670878 0.311952602 0.111964689 548.8095006 2729716.687 0.029381025 0.048920337 5.54E-06 5.256414563 -0.150317723 S(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_HeLa_A485_30min_R1 3 SRSPTPPSSAGLGSNSAPPIPDSR 24 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 3 0 S(0.931)RS(0.966)PT(0.976)PPS(0.102)S(0.025)AGLGSNSAPPIPDSR;S(0.912)RS(0.757)PT(0.631)PPS(0.466)S(0.233)AGLGSNSAPPIPDSR;S(0.856)RS(0.868)PT(0.668)PPS(0.298)S(0.283)AGLGS(0.014)NS(0.014)APPIPDSR ;; 131.56 2.88E-06 1842260000 285005 347783 312203 444561 471973 385291 488562 495267 344745 595640 TRUE FALSE FALSE 348403.379 388453.1965 427699.8816 468846.2417 424981.7109 405464.241 384176.7375 373801.9917 413932.1593 447157.9099 0.779150656 0.868715923 0.956485107 1.048502624 0.950406336 0.906758512 0.859152279 0.835950753 0.925695711 1 18.77042487 -4.954323589 0.008434641 1.799944927 6.11E-07 0.104221368 0.072162592 27976.13793 46.80735443 4757.417365 5237.038303 1.11E-05 4.954323589 -1.799944317 S(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_HeLa_A486_30min_R1 3 SRSPTPPSSAGLGSNSAPPIPDSR 24 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 3 0 S(0.952)RS(0.959)PT(0.826)PPS(0.194)S(0.069)AGLGSNSAPPIPDSR;S(0.977)RS(0.961)PT(0.597)PPS(0.369)S(0.097)AGLGSNSAPPIPDSR;S(0.799)RS(0.827)PT(0.487)PPS(0.406)S(0.409)AGLGS(0.033)NS(0.039)APPIPDSR ;; 115.67 0.0001315 2234670000 614091 701409 497725 323138 725445 721117 875020 835870 589834 948580 TRUE FALSE FALSE 571046.3921 645826.7964 690457.4495 752281.5945 634452.9236 632152.9163 656080.741 645560.6479 640961.286 711049.3938 0.80310369 0.908272761 0.971040065 1.057987815 0.892276865 0.889042199 0.922693623 0.907898458 0.901430044 1 19.43959026 -12.15996971 0.007136462 1.944292554 3.01E-06 0.104471606 0.062618204 67215.14267 50.41335727 7419.521026 6351.199667 6.92E-13 12.15996971 -1.944289549 S(ph)RS(ph)PTIK ddPTM_HeLa_A485_30min_R1 1 SRSPTIK 7 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 2 0 S(0.999)RS(0.866)PT(0.135)IK 77.358 0.0025211 0 307010 259310 167790 523450 347500 314870 542460 498690 250420 707180 TRUE FALSE FALSE 375303.3153 289634.0488 229862.5033 552044.7481 312901.6799 331356.1063 426558.9895 376385.4956 300676.997 530893.0407 0.706928301 0.545560078 0.432973284 1.039841749 0.589387421 0.624148521 0.803474442 0.708966716 0.566360781 1 19.0180617 -11.56993343 2.138195058 6.451730961 0.67050812 0.28446758 0.157640145 9194756.416 440612.21 243865082.6 0.041127263 2.69E-12 11.56993343 -5.781222842 S(ph)RS(ph)PVDLR ddPTM_HeLa_A485_30min_R1 3 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)RS(1)PVDLR;S(1)RS(1)PVDLR;S(1)RS(1)PVDLR ;; 83.573 0.014806 14731940000 5094330 5552260 4477310 7693200 7867440 5653650 8697640 8208600 5119450 10063230 TRUE FALSE FALSE 6227546.133 6201548.509 6133653.285 8113460.036 7084130.049 5949666.372 6839318.161 6195427.979 6146876.657 7554651.961 0.824332632 0.820891358 0.811904151 1.073968738 0.937717593 0.787550029 0.905312144 0.820081191 0.813654512 1 22.84893386 -4.975883891 0.009951067 1.726487402 1.30E-06 0.081074881 0.087733388 20267.23806 40.34820191 3306.369794 3699.419093 1.06E-05 4.975883891 -1.726486104 S(ph)RS(ph)PVDLR ddPTM_HeLa_A486_30min_R1 5 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(1)RS(1)PVDLR;S(1)RS(1)PVDLR;S(1)RS(1)PVDLR;S(1)RS(1)PVDLR;S(1)RS(1)PVDLR ;;;; 80.312 0.0098338 6294010000 3218540 3240990 2146714 1800681 3372920 3547050 4371000 4041050 2720120 4711160 TRUE FALSE FALSE 2992936.967 2984162.149 2977979.152 4192076.369 2949856.922 3109451.035 3277329.568 3120991.131 2955902.192 3531454.871 0.847508201 0.845023441 0.843272606 1.187067801 0.835309251 0.880501422 0.928039487 0.883769224 0.837021086 1 21.75183123 -10.17185788 0.007837004 1.880608168 6.44E-06 0.041507829 0.102783276 47885.50538 67.33862277 8485.248099 7685.441141 6.73E-11 10.17185788 -1.880601723 S(ph)RS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 SRSPVR 6 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)RS(1)PVR 48.794 0.011072 0 21782 19161 19573 24769 19239 21674 19773 21367 14891 25726 TRUE FALSE FALSE 26627.33075 21401.71227 26813.8672 26122.06775 17323.49761 22808.81713 15548.33702 16126.70975 17879.48711 19312.98165 1.378727078 1.108151639 1.388385682 1.352565245 0.896987214 1.18100962 0.805071806 0.835019162 0.925775597 1 14.23728329 -5.762724509 24.99979204 0.937634506 1.298573339 0.686837622 0.121112765 20.69120156 402511.4943 0.037803181 0.045274973 1.73E-06 5.762724509 0.360938833 S(ph)RS(ph)RAS(ph)PATHR ddPTM_HeLa_A485_30min_R1 2 SRSRASPATHR 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.954)RAS(0.859)PAT(0.188)HR;S(1)RS(0.993)RAS(0.906)PAT(0.101)HR ; 67.415 0.015798 1156430000 722790 584410 512640 1494980 785320 650490 926760 865490 761420 1882810 TRUE FALSE FALSE 883572.1419 652751.6658 702286.8687 1576646.972 707130.7834 684548.6506 728750.1551 653227.2205 914230.0098 1413460.118 0.625112892 0.461811167 0.496856515 1.11545204 0.500283506 0.484307015 0.515578859 0.462147614 0.646802834 1 20.43079975 -8.034114431 21.85822451 1.000000006 0.5833715 0.311271968 0.185235596 1189.196287 761957.5003 0.185278101 0.0478386 9.24E-09 8.034114431 -0.416628507 S(ph)RS(ph)RAS(ph)PVSR ddPTM_HeLa_A485_30min_R1 1 SRSRASPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.963)RAS(0.794)PVS(0.243)R 72.209 0.011129 710590000 369650 442630 391110 575120 730510 524320 691220 758500 450980 820160 TRUE FALSE FALSE 451877.3672 494391.7281 535797.8644 606537.3493 657777.8594 551772.5844 543535.2003 572476.6857 541487.5494 615709.2059 0.733913612 0.802963028 0.870212528 0.98510359 1.068325523 0.896157763 0.88277907 0.929784191 0.879453392 1 19.23188961 -4.796569131 2.213141286 0.945103182 0.747488124 0.620334011 0.056757205 0.229424252 2.181571575 0.017198282 0.058012082 1.60E-05 4.796569131 -0.197615058 S(ph)RS(ph)RAS(ph)PVSR ddPTM_HeLa_A486_30min_R1 2 SRSRASPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.998)RAS(0.99)PVS(0.012)R;S(0.999)RS(0.997)RAS(0.969)PVS(0.035)R ; 77.338 0.0082486 1354770000 1211500 1141410 957040 717690 1567340 1474470 1628750 1621620 1016690 1676620 TRUE FALSE FALSE 1126580.106 1050960.515 1327631.518 1670818.59 1370749.602 1292564.883 1221219.523 1252412.526 1104817.508 1256783.439 0.896399548 0.836230397 1.056372544 1.32944033 1.090680828 1.028470652 0.971702431 0.996522143 0.879083439 1 20.26130464 -6.762707595 3.019989485 0.958186761 1.048120452 0.084107637 0.125879858 0.761853736 14.30114119 0.063915525 0.043685206 1.73E-07 6.762707595 0.08993369 S(ph)RS(ph)RASPVS(ph)R ddPTM_HeLa_A485_30min_R1 1 SRSRASPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.998)RS(0.928)RAS(0.357)PVS(0.718)R 72.797 0.010799 961270000 696600 841570 731390 1058700 1312200 909140 1261200 1380600 761020 1451700 TRUE FALSE FALSE 851556.2668 939984.2908 1001961.597 1116534.1 1181552.761 956741.1646 991734.3169 1042005.685 913749.7335 1089817.907 0.781374817 0.862514999 0.919384413 1.024514365 1.084174479 0.877890847 0.91000002 0.956128248 0.838442577 1 20.05565567 -4.582639484 2.1913941 0.954491575 0.782408978 0.40045776 0.067649372 0.399359105 3.341739058 0.019627549 0.10329074 2.61E-05 4.582639484 -0.172082597 S(ph)RS(ph)RDKEER ddPTM_HeLa_A486_30min_R1 1 SRSRDKEER 9 3 P08621-4;P08621;P08621-2 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 2 0 S(1)RS(1)RDKEER 101.43 0.00099586 707380000 92083 48603 51553 173180 96356 232790 206120 170230 128660 238700 TRUE FALSE FALSE 85628.45722 44751.52127 71515.70224 403171.792 84270.132 204070.7366 154546.5959 131472.3451 139812.3524 178927.9663 0.478563854 0.250109148 0.399689907 2.253263144 0.47097239 1.140518952 0.863736391 0.734778066 0.781389043 1 17.44901937 -5.045567412 24.99977714 1.022958965 0.354473033 0.310244541 0.450081266 486.7498149 267046.3146 0.11956333 0.207100933 9.00E-06 5.045567412 -0.668485932 S(ph)RS(ph)RDS(ph)GDENEPIQER ddPTM_HeLa_A485_30min_R1 4 SRSRDSGDENEPIQER 16 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 3 0 S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER ;;; 141.93 8.41E-08 29355400000 2033550 2268890 1931170 2940630 3400810 2566940 3595460 3789510 2342490 4134760 TRUE FALSE FALSE 2485906.182 2534216.949 2645590.146 3101269.171 3062213.415 2701341.009 2827260.599 2860126.731 2812606.256 3104040.427 0.800861406 0.81642524 0.852305312 0.99910721 0.986524979 0.870266053 0.910832402 0.92142058 0.906111348 1 21.56571592 -5.055388507 5.179776685 0.936237182 0.813544246 0.643949854 0.041118906 0.135958853 7.861313123 0.011895077 0.021798092 8.80E-06 5.055388507 -0.122692936 S(ph)RS(ph)RDS(ph)GDENEPIQER ddPTM_HeLa_A486_30min_R1 5 SRSRDSGDENEPIQER 16 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 3 0 S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER;S(1)RS(1)RDS(1)GDENEPIQER ;;;; 126.29 2.23E-05 3730560000 920836 991830 732782 564148 1133593 1148354 1274302 1267833 860348 1323431 TRUE FALSE FALSE 856290.1516 913233.7786 1016534.815 1313365.054 991407.1956 1006681.759 955458.1614 979175.1025 934923.6574 992035.2635 0.863165034 0.920565843 1.024696251 1.323909646 0.99936689 1.014764088 0.963129232 0.987036589 0.942429863 1 19.92003188 -6.548363302 2.807175674 0.972228477 1.035720031 0.043699125 0.113819466 0.991471497 15.90477125 0.05187578 0.040262403 2.83E-07 6.548363302 0.063491554 S(ph)RS(ph)RS(ph)FDYNYR ddPTM_HeLa_A485_30min_R1 2 SRSRSFDYNYR 11 2 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 3 0 S(1)RS(1)RS(1)FDYNYR;S(1)RS(0.992)RS(0.988)FDY(0.018)NY(0.003)R ; 75.376 0.0105 1888840000 996770 977250 1275130 2253900 2473900 1537880 2267000 2243800 1558600 3440400 TRUE FALSE FALSE 1218498.048 1091530.887 1746853.65 2377024.85 2227589.83 1618401.019 1782636.93 1693504.532 1871396.724 2582771.596 0.47177925 0.422619982 0.676348483 0.920338776 0.862480381 0.626614069 0.690203088 0.65569272 0.72456919 1 21.30048864 -4.864967848 4.299696096 0.763694255 0.447274217 0.570138998 0.113998925 0.157455395 5.117001336 0.031381046 0.071253046 1.36E-05 4.864967848 -0.316420038 S(ph)RS(ph)RS(ph)LS(ph)RDR ddPTM_HeLa_A485_30min_R1 1 SRSRSLSRDR 10 3 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 4 0 S(1)RS(1)RS(1)LS(1)RDR 42.52 0.022704 1117000000 213370 191050 353430 744040 1539100 526710 971570 1421700 540370 1427300 TRUE FALSE FALSE 260833.4204 213391.6356 484178.4644 784685.0212 1385861.8 554287.7212 763986.1325 1073025.846 648817.3024 1071500.378 0.243428211 0.19915218 0.451869616 0.732323607 1.293384332 0.517300537 0.713005939 1.001423675 0.605522234 1 20.03120093 -5.136535147 2.608372288 0.842084469 0.229700202 0.595425726 0.210138247 0.195747863 2.581068715 0.060466145 0.123020745 7.30E-06 5.136535147 -0.612384267 S(ph)RS(ph)RS(ph)LS(ph)RDR ddPTM_HeLa_A486_30min_R1 1 SRSRSLSRDR 10 3 P84103 P84103 SRSF3 Serine/arginine-rich splicing factor 3 4 0 S(1)RS(1)RS(1)LS(1)RDR 50.305 0.015916 819700000 333380 435830 836860 1067300 1993900 1212400 1520100 1724400 712820 810690 TRUE FALSE FALSE 310011.7836 401293.2435 1160914.604 2484728.338 1743806.47 1062826.415 1139754.902 1331791.763 774607.8115 607687.9473 0.510149633 0.660360709 1.910379511 4.088822807 2.86957554 1.748967409 1.875559499 2.191571792 1.274680229 1 19.21297115 -4.795786841 4.491028425 2.253459582 0.553571828 0.356925073 0.819108418 0.196903734 8.903635839 0.228113214 0.544954437 1.60E-05 4.795786841 -1.699887754 S(ph)RS(ph)RS(ph)PHEAGFCVYLK ddPTM_HeLa_A485_30min_R1 1 SRSRSPHEAGFCVYLK 16 2 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 3 0 S(1)RS(1)RS(1)PHEAGFCVYLK 67.358 0.010197 219670000 69293 71570 49375 107350 106270 78936 125940 134990 72800 156660 TRUE FALSE FALSE 84706.98879 79939.48892 67640.86717 113214.2587 95689.38566 83068.9669 99031.89016 101883.4908 87410.29224 117607.5451 0.720251313 0.679713949 0.575140541 0.962644519 0.81363305 0.706323449 0.842053884 0.866300634 0.743237113 1 16.84362109 -13.9999994 0.034282628 2.217830472 4.72E-08 0.3937859 0.09704974 1201.677336 3.084857663 165.6720646 58.97011009 1.00E-14 13.9999994 -2.217830425 S(ph)RS(ph)RS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SRSRSPK 7 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;Q9Y2W1;A0A3B3ITZ9;E9PQ01;E9PKN0;O94913;O15042-2;O15042;E7ET15;O15042-3;H7C4V2;Q13247;Q13247-3 Q9NYF8-2;Q9NYF8-4;Q9Y2W1;E9PQ01;O15042-2;Q13247 BCLAF1;THRAP3;PCF11;U2SURP;SRSF6 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3;Pre-mRNA cleavage complex 2 protein Pcf11;U2 snRNP-associated SURP motif-containing protein;Serine/arginine-rich splicing factor 6 3 0 S(1)RS(1)RS(1)PK;S(1)RS(1)RS(1)PK ; 72.531 0.019684 3811500000 2480900 1608020 923960 7173200 1603860 2071300 2971700 3157900 1348580 5862400 TRUE FALSE FALSE 3032767.646 1796063.951 1265771.253 7565053.752 1444174.067 2179750.065 2336772.018 2383420.074 1619227.636 4401011.569 0.689106947 0.408102529 0.287609163 1.718935211 0.328145937 0.495283875 0.53096248 0.541561874 0.367921695 1 22.06940373 S(ph)RS(ph)RS(ph)PLAIR ddPTM_HeLa_A485_30min_R1 2 SRSRSPLAIR 10 2 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)RS(1)PLAIR;S(1)RS(1)RS(1)PLAIR ; 85.473 0.0043137 4654900000 1872470 2349100 1745840 2999100 2813200 2583900 3270700 3536300 1939640 4157600 TRUE FALSE FALSE 2288994.492 2623806.811 2391698.866 3162933.239 2533107.93 2719189.009 2571888.226 2669016.88 2328907.957 3121186.835 0.733373109 0.840643944 0.76627866 1.01337517 0.811584844 0.871203536 0.824009699 0.855128841 0.746161021 1 21.57366329 -11.54323339 2.272010659 3.84138402 0.834338272 0.313186058 0.075571803 4456481.595 393226.5374 66331971.27 0.019332339 2.86E-12 11.54323339 -3.007045749 S(ph)RS(ph)RS(ph)PLAIR ddPTM_HeLa_A486_30min_R1 2 SRSRSPLAIR 10 2 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)RS(1)PLAIR;S(1)RS(1)RS(1)PLAIR ; 99.915 0.0017758 4007600000 1223910 1095570 672460 656570 1037860 1255510 1407270 1315470 900590 1718000 TRUE FALSE FALSE 1138120.229 1008753.043 932854.5211 1528528.141 907681.9211 1100617.941 1055156.161 1015966.198 978653.8663 1287801.618 0.88376984 0.783314005 0.724377504 1.186928266 0.704830549 0.854648671 0.819346821 0.788915143 0.759941479 1 20.29647894 S(ph)RS(ph)RS(ph)PPPVSK ddPTM_HeLa_A486_30min_R1 4 SRSRSPPPVSK 11 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 3 0 S(1)RS(1)RS(1)PPPVSK;S(1)RS(1)RS(1)PPPVSK;S(1)RS(0.996)RS(0.993)PPPVS(0.011)K;S(1)RS(1)RS(1)PPPVSK ;;; 81.594 0.0063619 28698200000 14259600 14084900 6411920 7683970 10756400 15742200 18129600 15978600 11131800 22618400 TRUE FALSE FALSE 13260075.68 12968761.23 8894787.141 17888670.49 9407232.013 13800087.42 13593382.32 12340621.59 12096713.39 16954605.42 0.78209285 0.764910826 0.52462366 1.055092115 0.554848183 0.813943296 0.801751618 0.727862506 0.71347655 1 24.01517387 -10.691987 2.652351007 1.038273152 0.748789323 0.228555976 0.138487837 44630020.15 37837498.03 11463024.47 0.034317285 2.03E-11 10.691987 -0.289483829 S(ph)RS(ph)RS(ph)PSDKR ddPTM_HeLa_A486_30min_R1 2 SRSRSPSDKR 10 3 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 3 0 S(1)RS(0.999)RS(0.995)PS(0.006)DKR;S(1)RS(0.986)RS(0.932)PS(0.083)DKR ; 58.32 0.034035 1007070000 3129200 1647740 736650 1698020 942930 3584100 2744900 1746550 2279460 6432300 TRUE FALSE FALSE 2909859.239 1517167.081 1021900.608 3953076.373 824658.9269 3141930.182 2058096.987 1348898.692 2477045.428 4821610.213 0.603503624 0.314659837 0.211941771 0.819866434 0.171033927 0.651635044 0.426848479 0.279761041 0.513738216 1 22.2010836 -8.035000399 22.14137593 1.000000006 0.432101086 0.426705182 0.195343202 1059.127841 670008.3315 0.177525895 0.045836989 9.23E-09 8.035000399 -0.56789892 S(ph)RS(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_HeLa_A485_30min_R1 2 SRSRSPTPPSSAGLGSNSAPPIPDSR 26 2 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 4 0 S(0.955)RS(0.893)RS(0.91)PT(0.626)PPS(0.478)S(0.127)AGLGS(0.005)NS(0.005)APPIPDSR;S(0.942)RS(0.97)RS(0.91)PT(0.908)PPS(0.213)S(0.057)AGLGSNSAPPIPDSR ; 85.658 0.0019028 1184750000 286409 352520 300602 507540 486700 410580 568590 592710 345380 661910 TRUE FALSE FALSE 350119.694 393744.1475 411807.1889 535265.625 438242.4391 432077.3339 447106.1015 447346.9432 414694.598 496908.0186 0.704596587 0.792388395 0.828739271 1.077192569 0.881938755 0.86953182 0.899776387 0.900261067 0.834550022 1 18.9226193 -4.787258849 2.590799342 0.915319756 0.730344632 0.505799977 0.069352102 0.234591488 3.114925582 0.018997549 0.058440123 1.63E-05 4.787258849 -0.184975125 S(ph)RS(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_HeLa_A486_30min_R1 2 SRSRSPTPPSSAGLGSNSAPPIPDSR 26 2 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 4 0 S(1)RS(0.952)RS(0.817)PT(0.817)PPS(0.338)S(0.077)AGLGSNSAPPIPDSR;S(0.981)RS(0.953)RS(0.962)PT(0.844)PPS(0.198)S(0.051)AGLGS(0.005)NS(0.005)APPIPDSR ; 119.36 4.72E-05 664360000 258440 275510 207386 149672 299790 338100 363770 347360 231747 377710 TRUE FALSE FALSE 240324.6906 253677.5842 287691.4132 348443.98 262187.5428 296388.6595 272750.8984 268273.7108 251835.0166 283128.9575 0.848817064 0.895978943 1.016114408 1.230690012 0.926035772 1.04683273 0.963345116 0.947531871 0.889471069 1 18.11109979 -9.822442015 13.74989493 0.999999994 0.980028811 0.00258549 0.102629052 0 0 0.104461755 0.025335697 1.51E-10 9.822442015 -0.019971183 S(ph)RS(ph)RS(ph)RS(ph)PPPVSK ddPTM_HeLa_A485_30min_R1 1 SRSRSRSPPPVSK 13 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(0.999)RS(0.998)RS(0.995)RS(0.968)PPPVS(0.039)K 45.844 0.021749 1264300000 795390 511770 771100 1981100 2350800 1080400 1958600 2472900 1120200 3084400 TRUE FALSE FALSE 972321.7614 571617.0497 1056361.978 2089322.477 2116746.098 1136968.073 1540129.11 1866417.398 1345013.865 2315515.844 0.419915832 0.246863804 0.456210214 0.902314049 0.914157467 0.491021504 0.665134343 0.806048208 0.580870076 1 21.1429022 -5.082007327 5.047070347 0.74675655 0.336046242 0.58238797 0.153410517 0.153247124 6.725253076 0.042301892 0.076551674 8.28E-06 5.082007327 -0.410710308 S(ph)RS(ph)RS(ph)RS(ph)PPPVSK ddPTM_HeLa_A486_30min_R1 1 SRSRSRSPPPVSK 13 3 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 4 0 S(1)RS(1)RS(1)RS(1)PPPVSK 94.281 0.0004157 1742000000 721360 1043300 1142600 1513200 2392300 2302000 3017000 2982600 1287000 1771800 TRUE FALSE FALSE 670796.3891 960625.1084 1585045.32 3522806.073 2092235.427 2018002.645 2262114.689 2303527.09 1398558.196 1328129.748 0.505068417 0.723291614 1.193441622 2.652456268 1.575324572 1.519431854 1.703233207 1.734414197 1.053028289 1 20.34096466 -4.886399526 3.761465507 1.651678629 0.608114381 0.447375005 0.432683721 0.186490812 4.944368913 0.114792933 0.266743581 1.30E-05 4.886399526 -1.043564248 S(ph)RS(ph)RS(ph)T(ph)PVRDR ddPTM_HeLa_A485_30min_R1 1 SRSRSTPVRDR 11 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 4 0 S(1)RS(1)RS(1)T(1)PVRDR 55.344 0.013004 311330000 146900 155430 153980 268170 308070 177460 257160 357390 168090 381960 TRUE FALSE FALSE 179577.3982 173606.1864 210943.6096 282819.4481 277397.4691 186751.5312 202215.6652 269739.5421 201824.1212 286744.4015 0.626262962 0.6054388 0.735650316 0.986312014 0.967403261 0.651282223 0.705212252 0.940696804 0.703846771 1 18.12940579 -4.965120903 4.664831264 0.840492902 0.621662204 0.375642169 0.120988274 0.218470715 11.27396375 0.033505984 0.070952242 1.08E-05 4.965120903 -0.218830698 S(ph)RS(ph)RS(ph)T(ph)PVRDR ddPTM_HeLa_A486_30min_R1 2 SRSRSTPVRDR 11 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 4 0 S(1)RS(1)RS(1)T(1)PVRDR;S(1)RS(1)RS(1)T(1)PVRDR ; 63.421 0.0076866 541190000 327970 346570 355560 381870 593610 556010 563670 547980 373360 604240 TRUE FALSE FALSE 304980.9966 319106.531 493242.3542 889012.6586 519153.8986 487415.1393 422633.8041 423216.9163 405723.1454 452934.3711 0.673344785 0.704531498 1.088992988 1.962784711 1.146201154 1.076127515 0.933101639 0.934389049 0.895765858 1 18.7889425 -6.652674835 3.494041593 0.934196573 1.135992408 0.057204762 0.330481951 0.809503865 19.2142475 0.153289175 0.113783923 2.22E-07 6.652674835 0.201795835 S(ph)RS(ph)RS(ph)TNTAVSR ddPTM_HeLa_A486_30min_R1 1 SRSRSTNTAVSR 12 2 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 3 0 S(1)RS(0.998)RS(0.891)T(0.095)NT(0.015)AVS(0.001)R 61.815 0.027107 1454500000 325340 360640 519350 448920 1000300 763620 908990 1011200 456120 624300 TRUE FALSE FALSE 302535.3461 332061.573 720456.2287 1045108.447 874833.0466 669412.3283 681551.0877 780971.8343 495656.8489 467971.2165 0.646482808 0.709576917 1.539531072 2.233275061 1.869416357 1.430456201 1.456395316 1.668845875 1.059160973 1 18.83606027 -4.762103937 5.824909662 1.589469602 0.665386139 0.494219978 0.34227235 0.115016667 13.81671873 0.091625764 0.221093896 1.73E-05 4.762103937 -0.924083462 S(ph)RS(ph)RS(ph)TPVR ddPTM_HeLa_A486_30min_R1 1 SRSRSTPVR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 3 0 S(0.958)RS(0.964)RS(0.564)T(0.514)PVR 41.052 0.012215 0 290410 137820 275440 132930 188010 456760 286390 223680 387060 378630 TRUE FALSE FALSE 270053.7587 126898.6413 382097.7445 309467.7579 164428.0327 400409.5952 214732.1929 172752.9469 420610.6724 283818.5835 0.951501326 0.447111812 1.346274581 1.090371723 0.579342024 1.410794143 0.756582568 0.608673839 1.481970163 1 18.11460953 -4.751730068 24.99956951 1.009563997 0.699306748 0.143631505 0.322669626 406.1297901 1045683.108 0.079584616 0.204932997 1.77E-05 4.751730068 -0.310257249 S(ph)RS(ph)RS(ph)TPVRDR ddPTM_HeLa_A486_30min_R1 1 SRSRSTPVRDR 11 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 3 0 S(1)RS(0.968)RS(0.666)T(0.367)PVRDR 68.845 0.014667 698170000 351200 377500 570470 503530 1155500 708600 999300 1096700 421600 671880 TRUE FALSE FALSE 326582.6936 347585.5252 791371.2617 1172243.287 1010566.415 621180.1365 749264.5705 847005.3508 458144.6275 503636.8748 0.648448733 0.690151064 1.571313185 2.327556511 2.006537777 1.233388911 1.487707926 1.68177787 0.909672525 1 18.94202439 -2.810479076 9.102696734 1.407447132 1.269800551 0 0.5337362 0 0 0.13262007 0 0.001547109 2.810479076 -0.137646581 S(ph)RS(ph)RS(ph)YS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SRSRSYSPR 9 2 P62995;P62995-3;H7BXF3;H7C2L4;M0R088;Q8IYB3;Q13595;Q13595-3;Q13595-4 P62995;M0R088;Q8IYB3;Q13595 TRA2B;SRRM1;TRA2A Transformer-2 protein homolog beta;Serine/arginine repetitive matrix protein 1;Transformer-2 protein homolog alpha 4 0 S(1)RS(0.999)RS(0.953)Y(0.301)S(0.747)PR;S(1)RS(0.999)RS(0.948)Y(0.129)S(0.924)PR ; 70.47 0.005396 2575500000 397580 472650 597690 1097120 1685380 720960 1254540 1725700 770230 1874880 TRUE FALSE FALSE 486020.2994 527922.306 818800.403 1157052.888 1517577.649 758708.3508 986497.2804 1302469.369 924808.096 1407506.921 0.345305797 0.375076171 0.581738101 0.8220584 1.07820262 0.539044135 0.700882721 0.925373332 0.657054031 1 20.42471059 -4.981692053 2.604625711 0.807960143 0.353824191 0.594243302 0.152317792 0.196873912 2.674788706 0.043293778 0.103475751 1.04E-05 4.981692053 -0.454135951 S(ph)RS(ph)RS(ph)YS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SRSRSYSPR 9 2 P62995;P62995-3;H7BXF3;H7C2L4;M0R088;Q8IYB3;Q13595;Q13595-3;Q13595-4 P62995;M0R088;Q8IYB3;Q13595 TRA2B;SRRM1;TRA2A Transformer-2 protein homolog beta;Serine/arginine repetitive matrix protein 1;Transformer-2 protein homolog alpha 4 0 S(1)RS(0.994)RS(0.954)Y(0.067)S(0.986)PR;S(1)RS(0.998)RS(0.916)Y(0.091)S(0.995)PR ; 85.45 0.00074613 368320000 625230 781560 1125110 1035070 1995860 1483930 1611610 1806860 1035700 1221930 TRUE FALSE FALSE 581404.6057 719626.3392 1560782.723 2409695.27 1745520.628 1300857.804 1208368.132 1395477.421 1125475.31 915950.7746 0.634755297 0.785660495 1.704002843 2.63081307 1.905692616 1.420226764 1.319250079 1.52352884 1.228750869 1 19.80491054 -7.988682177 1.184095322 0.998252961 1.534662194 0.078081643 0.528984279 1.502365757 4.746647235 0.570178448 0.180230552 1.03E-08 7.988682177 0.536409233 S(ph)RS(ph)RSPHEAGFCVYLK ddPTM_HeLa_A485_30min_R1 4 SRSRSPHEAGFCVYLK 16 2 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 2 0 S(0.63)RS(0.74)RS(0.63)PHEAGFCVYLK;S(0.667)RS(0.667)RS(0.667)PHEAGFCVYLK;S(0.62)RS(0.76)RS(0.62)PHEAGFCVYLK;S(0.625)RS(0.751)RS(0.625)PHEAGFCVYLK ;;; 122.53 2.03E-05 2796680000 1285600 1595180 1459160 1641770 2995330 2378310 3459760 4648850 1893480 2789280 TRUE FALSE FALSE 1571577.285 1781722.425 1998964.005 1731455.738 2697104.428 2502834.634 2720554.012 3508712.248 2273484.068 2093963.829 0.750527427 0.850885006 0.954631583 0.826879488 1.288037735 1.195261637 1.299236393 1.675631737 1.085732254 1 20.99780509 -5.763757315 24.99384496 1.290091509 0.853877603 0.567120147 0.174702062 42.24329935 455502.6954 0.052713443 0.062660821 1.72E-06 5.763757315 -0.436213907 S(ph)RS(ph)RSPHEAGFCVYLK ddPTM_HeLa_A486_30min_R1 4 SRSRSPHEAGFCVYLK 16 2 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 2 0 S(0.667)RS(0.667)RS(0.667)PHEAGFCVYLK;S(0.617)RS(0.766)RS(0.617)PHEAGFCVYLK;S(0.667)RS(0.667)RS(0.667)PHEAGFCVYLK;S(0.667)RS(0.667)RS(0.667)PHEAGFCVYLK ;;; 115.63 8.00E-05 1989320000 1194420 1076790 1180300 682210 2378510 1575880 2194490 2276160 1209160 1647570 TRUE FALSE FALSE 1110697.326 991461.2388 1637343.77 1588219.357 2080175.097 1381463.948 1645405.391 1757928.056 1313970.962 1235007.748 0.899344419 0.802797586 1.325776111 1.285999508 1.684341738 1.118587272 1.332303699 1.423414597 1.063937424 1 20.23608866 -4.763566521 24.9997509 1.305276033 0.851070896 0.451326034 0.187115217 40.97894955 481641.3345 0.046779473 0.105723667 1.72E-05 4.763566521 -0.454205137 S(ph)RS(ph)RT(ph)PLISR ddPTM_HeLa_A486_30min_R1 2 SRSRTPLISR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)RT(1)PLISR;S(1)RS(0.999)RT(0.997)PLIS(0.004)R ; 91.076 0.0036535 29394000000 29666000 27002000 19289000 14400700 30346000 29914000 35972000 33702000 23061000 39566000 TRUE FALSE FALSE 27586566.6 24862263.18 26758217.38 33525557.37 26539721.71 26223514.82 26971425.13 26028790.31 25059946.05 29658416.07 0.930142949 0.838286951 0.902213298 1.13038934 0.894846227 0.884184603 0.909402075 0.877619029 0.844952272 1 24.82193822 S(ph)RS(ph)RT(ph)PLLPR ddPTM_HeLa_A486_30min_R1 1 SRSRTPLLPR 10 2 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)RT(1)PLLPR 88.311 0.0041616 861250000 814340 769000 536870 386320 762060 868160 1033000 951170 692170 1214700 TRUE FALSE FALSE 757258.9713 708061.6394 744760.4419 899372.4835 666475.3289 761055.246 774532.474 734609.3549 752167.8529 910531.2136 0.831667229 0.777635768 0.817940594 0.987744813 0.731963187 0.835836526 0.850638026 0.806792061 0.826075857 1 19.79634895 -9.966755605 4.554935136 1.000003074 0.829630387 0.405001141 0.061965599 17706000.65 12914296.73 519.1722848 0.014753957 1.08E-10 9.966755605 -0.170372687 S(ph)RS(ph)RT(ph)PPAIR ddPTM_HeLa_A486_30min_R1 1 SRSRTPPAIR 10 2 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)RT(1)PPAIR 63.128 0.028341 2135500000 774270 765450 538670 400440 826710 849850 1012400 976400 634710 1052500 TRUE FALSE FALSE 719997.6713 704792.9543 747257.4501 932244.5571 723016.323 745004.1476 759086.8119 754095.0347 689727.1738 788947.1494 0.912605707 0.893333546 0.947157805 1.181631188 0.916431885 0.944301717 0.962151663 0.955824525 0.874237488 1 19.58956913 -9.441458824 14.11364738 1.000004313 0.957760556 0.026445444 0.080813743 0 0 0.081072061 0.019662863 3.62E-10 9.441458824 -0.042243757 S(ph)RS(ph)RT(ph)SPAPWK ddPTM_HeLa_A485_30min_R1 1 SRSRTSPAPWK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.881)RT(0.699)S(0.422)PAPWK 72.315 0.014329 246060000 392670 298480 262400 784110 543770 447930 642980 499830 396400 1151700 TRUE FALSE FALSE 480018.0868 333384.6396 359472.6794 826943.9438 489630.3495 471382.9222 505602.0703 377245.9088 475953.844 864602.3855 0.555189408 0.385593014 0.415766467 0.956444208 0.566306961 0.545201968 0.58477987 0.436323003 0.550488701 1 19.72167729 -10.34629145 3.003180796 1.004814409 0.555255771 0.442455928 0.149819055 30711913.88 38749644.79 1310265.71 0.042810042 4.51E-11 10.34629145 -0.449558638 S(ph)RS(ph)RT(ph)SPAPWKR ddPTM_HeLa_A486_30min_R1 1 SRSRTSPAPWKR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.987)RS(0.987)RT(0.553)S(0.473)PAPWKR 46.156 0.035821 146590000 147110 121530 78290 97397 156550 154740 201560 206890 107740 228510 TRUE FALSE FALSE 136798.3487 111899.5202 108605.9847 226745.1382 136914.0392 135649.7521 151127.5561 159785.6634 117078.9899 171289.6086 0.798637756 0.653276758 0.634048881 1.323753028 0.799313165 0.791932174 0.882292611 0.932839211 0.683514843 1 17.38607811 S(ph)RS(ph)RT(ph)SPVSR ddPTM_HeLa_A485_30min_R1 1 SRSRTSPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.991)RT(0.775)S(0.233)PVSR 73.262 0.01412 596810000 379970 449440 417880 633900 776060 468240 695970 772650 455630 899060 TRUE FALSE FALSE 464493.0156 501998.0984 572471.2014 668528.3519 698792.7415 492756.3224 547270.3239 583156.376 547070.7617 674940.888 0.688198069 0.743766021 0.848179762 0.990499115 1.035339174 0.730073301 0.810841858 0.864011036 0.810546185 1 19.36440163 -4.732623916 3.143319209 0.884019989 0.701089405 0.368763685 0.091171556 0.286455393 5.67844319 0.026032351 0.078100972 1.85E-05 4.732623916 -0.182930584 S(ph)RS(ph)RT(ph)SPVSR ddPTM_HeLa_A486_30min_R1 1 SRSRTSPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.99)RT(0.675)S(0.299)PVS(0.037)R 61.23 0.032698 1425100000 180930 175110 163920 114650 260390 228430 252950 254910 175780 247010 TRUE FALSE FALSE 168247.7413 161233.6459 227394.2139 266910.9941 227729.4582 200248.6291 189659.2346 196872.5576 191016.7519 185157.0882 0.908675671 0.870793808 1.228115089 1.441538083 1.229925683 1.081506687 1.024315279 1.063273135 1.031646986 1 17.49839025 -6.508298104 10.39657164 1.037569232 1.14446905 0.093943314 0.153404444 1.144093355 796.324558 0.064467639 0.054105042 3.10E-07 6.508298104 0.106899818 S(ph)RS(ph)RTS(ph)PAPWK ddPTM_HeLa_A486_30min_R1 1 SRSRTSPAPWK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.995)RS(0.938)RT(0.299)S(0.768)PAPWK 85.53 0.003743 384160000 604010 624100 325990 386780 652690 798550 1002500 878720 583020 1082200 TRUE FALSE FALSE 561672.0181 574644.0431 452222.0583 900443.3868 570823.5341 700033.0201 751663.8966 678654.6383 633556.643 811210.0761 0.692387872 0.708378828 0.557466027 1.110000249 0.703669186 0.862949119 0.926595858 0.836595425 0.78100194 1 19.62971605 -5.236163394 24.99983603 0.874676909 0.658307702 0.475718576 0.112792992 704.5943357 696895.5663 0.029262148 0.050659448 5.81E-06 5.236163394 -0.216369207 S(ph)RS(ph)RTS(ph)PAPWKR ddPTM_HeLa_A485_30min_R1 1 SRSRTSPAPWKR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.876)RS(0.943)RT(0.188)S(0.993)PAPWKR 58.461 0.024594 275460000 94860 111670 82576 144270 182530 147580 217830 260270 103970 227060 TRUE FALSE FALSE 115961.2797 124728.8351 113124.2987 152151.1048 164356.6723 155307.0606 171288.841 196438.3744 124835.8253 170458.1207 0.680291905 0.731727151 0.663648632 0.892601093 0.964205587 0.911115645 1.004873457 1.152414291 0.732354814 1 17.37905781 -5.40190947 3.247813548 0.966949694 0.695000189 0.593405671 0.099286827 0.171208923 3.37992673 0.028527033 0.044304471 3.96E-06 5.40190947 -0.271949506 S(ph)RS(ph)RTS(ph)PAPWKR ddPTM_HeLa_A486_30min_R1 1 SRSRTSPAPWKR 12 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.995)RT(0.016)S(0.99)PAPWKR 81.346 0.0039561 133130000 166630 142900 100000 107560 181880 168280 240190 212390 106730 273450 TRUE FALSE FALSE 154950.0975 131576.0836 138722.6781 250405.1158 159066.9144 147519.3245 180091.9215 164033.4334 115981.4423 204976.3401 0.75594138 0.641908639 0.6767741 1.221629363 0.776025732 0.719689523 0.878598581 0.800255451 0.565828438 1 17.64509787 S(ph)RS(ph)RTS(ph)PVSR ddPTM_HeLa_A485_30min_R1 1 SRSRTSPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.959)RT(0.298)S(0.739)PVS(0.006)R 64.04 0.022966 595380000 374880 417260 391900 623300 731220 464940 678270 729120 408270 825770 TRUE FALSE FALSE 458270.7627 466054.9273 536880.1183 657349.3007 658417.1693 489283.5395 533352.0735 550302.1768 490206.0441 619920.7362 0.7392409 0.751797609 0.866046394 1.060376371 1.06209896 0.789267903 0.860355272 0.887697644 0.790756004 1 19.24172424 -4.836908787 4.004645275 0.917513258 0.743117271 0.359600543 0.092350154 0.248599288 7.623296428 0.02669906 0.063148209 1.46E-05 4.836908787 -0.174395987 S(ph)RS(ph)RTS(ph)PVSR ddPTM_HeLa_A486_30min_R1 1 SRSRTSPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.996)RS(0.869)RT(0.141)S(0.994)PVS(0.001)R 78.71 0.0087663 2443000000 862880 837110 733400 594210 1223600 1152000 1359100 1332200 927030 1416200 TRUE FALSE FALSE 802396.5679 770774.3549 1017392.121 1383350.91 1070124.678 1009877.953 1019038.805 1028887.142 1007385.707 1061574.302 0.755855305 0.72606727 0.95838051 1.303112657 1.00805443 0.951302185 0.959931682 0.969208787 0.948954496 1 20.01777392 -4.828367838 4.854282753 1.020570774 0.740001132 0.550205872 0.09908717 0.146901332 6.567738274 0.0281958 0.06352919 1.48E-05 4.828367838 -0.280569643 S(ph)RS(ph)RTS(ph)VTR ddPTM_HeLa_A485_30min_R1 2 SRSRTSVTR 9 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.978)RT(0.023)S(0.78)VT(0.22)R;S(1)RS(0.983)RT(0.029)S(0.967)VT(0.021)R ; 103.13 0.0012525 1466620000 818090 1001100 767840 1330060 1324970 1062660 1465670 1749360 935860 1854500 TRUE FALSE FALSE 1000071.298 1118169.937 1051895.968 1402717.81 1193051.335 1118299.234 1152517.631 1320326.717 1123678.518 1392207.28 0.718335059 0.803163403 0.755559882 1.007549544 0.856949502 0.803256276 0.827834797 0.948369353 0.807120128 1 20.40894259 -1 0.064039873 1.147499722 0.207352282 0.360263206 0.075849847 370.1018664 1.766645997 4.950559147 31.95454331 0.1 1 -0.940147439 S(ph)RS(ph)RTS(ph)VTR ddPTM_HeLa_A486_30min_R1 2 SRSRTSVTR 9 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.987)RT(0.075)S(0.889)VT(0.049)R;S(1)RS(0.914)RT(0.089)S(0.975)VT(0.022)R ; 108.23 0.00090629 1092800000 1437690 1178860 1150080 956810 1676380 1993750 1937610 1881210 1360650 2186880 TRUE FALSE FALSE 1336915.355 1085442.84 1595421.776 2227502.035 1466112.789 1747781.396 1452799.484 1452899.55 1478592.238 1639271.014 0.815554807 0.662149718 0.97325077 1.358836956 0.894368763 1.066194291 0.886247284 0.886308327 0.901981567 1 20.64462296 -4.816275043 7.511700079 1.000636207 0.739534352 0.355036634 0.138598806 0.224679146 25.93660964 0.037904964 0.080380124 1.53E-05 4.816275043 -0.261101855 S(ph)RS(ph)S(ph)SPVTELASRS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 SRSSSPVTELASRSPIR 17 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.996)RS(0.867)S(0.568)S(0.567)PVT(0.009)ELAS(0.011)RS(0.982)PIR 70.316 0.0028655 387550000 240800 222470 176800 186950 256290 299210 351960 366760 225800 428550 TRUE FALSE FALSE 223921.1635 204840.667 245261.6949 435229.0479 224143.7184 262296.5123 263895.8853 283256.7543 245372.5258 321238.2906 0.697056266 0.63765956 0.763488358 1.354847976 0.69774907 0.81651696 0.821495734 0.881765227 0.763833369 1 18.29328434 -5.007416434 24.90312175 0.897864927 0.675661835 0.244704103 0.17084693 485.6294981 1630681.885 0.045705081 0.089306689 9.83E-06 5.007416434 -0.222203092 S(ph)RS(ph)SS(ph)PVTELASR ddPTM_HeLa_A485_30min_R1 2 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.998)RS(0.986)S(0.021)S(0.995)PVTELASR;S(0.944)RS(0.978)S(0.083)S(0.995)PVTELASR ; 99.273 0.001664 1899520000 434570 446670 357900 738020 496060 425080 591200 549060 370930 894000 TRUE FALSE FALSE 531238.5973 498904.171 490302.1035 778336.1638 446670.5246 447336.5315 464885.2903 414402.1741 445372.2486 671142.2529 0.791543961 0.74336576 0.730548705 1.159718615 0.665537779 0.666530128 0.692677727 0.617458031 0.663603352 1 19.35625906 S(ph)RS(ph)SS(ph)PVTELASR ddPTM_HeLa_A486_30min_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.876)RS(0.647)S(0.622)S(0.84)PVT(0.015)ELASR 68.481 0.0032297 0 106260 104950 62712 49346 81385 105530 110940 108900 89299 156090 TRUE FALSE FALSE 98811.72273 96633.37978 86995.76589 114879.9818 71176.93442 92510.78155 83181.6386 84105.84727 97039.50922 117004.048 0.84451542 0.825897748 0.74352783 0.981846216 0.60832882 0.790663085 0.710929579 0.718828525 0.82936882 1 16.83619892 S(ph)RS(ph)SS(ph)VGSS(ph)SSYPISPAVSR ddPTM_HeLa_A485_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 4 0 S(0.684)RS(0.54)S(0.559)S(0.823)VGS(0.351)S(0.369)S(0.334)S(0.275)Y(0.065)PISPAVSR 66.644 0.008764 411420000 166940 203740 185710 211920 283890 204570 270560 322140 184680 315720 TRUE FALSE FALSE 204075.2271 227565.6207 254411.857 223496.653 255624.9148 215280.9689 212752.6457 243134.6599 221743.582 237016.8144 0.861015821 0.960124375 1.073391597 0.942956952 1.078509622 0.908294078 0.897626805 1.025811863 0.935560553 1 17.85462988 -4.882006011 0.003159137 1.931003777 4.45E-05 0.019099213 0.069603085 437581.2571 266.4730278 79937.15585 82953.99907 1.31E-05 4.882006011 -1.930959284 S(ph)RS(ph)SS(ph)VGSSS(ph)SYPISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 4 0 S(0.978)RS(0.513)S(0.513)S(0.962)VGS(0.155)S(0.269)S(0.328)S(0.268)Y(0.013)PISPAVSR 132.48 4.02E-07 311760000 173590 175280 145480 80350 180700 162310 201770 199820 157650 204900 TRUE FALSE FALSE 161422.2374 161390.1744 201813.7521 187058.8607 158034.921 142285.8424 151285.0119 154325.348 171315.2289 153591.7063 1.050982773 1.050774018 1.313962563 1.217896885 1.028928741 0.926390141 0.984981647 1.004776571 1.115393748 1 17.22874079 -5.861952898 6.158385633 1.002699637 1.161232125 0.430831171 0.083627255 0.214656874 11.23170555 0.028328304 0.032324441 1.37E-06 5.861952898 0.158532488 S(ph)RS(ph)SS(ph)VGSSSS(ph)YPISPAVSR ddPTM_HeLa_A485_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 4 0 S(0.858)RS(0.838)S(0.31)S(0.994)VGS(0.176)S(0.209)S(0.268)S(0.346)Y(0.001)PISPAVSR 158 4.73E-10 426770000 119450 159240 122530 139960 175560 158600 201840 183600 118910 204280 TRUE FALSE FALSE 146021.2404 177861.7328 167858.9459 147605.6604 158080.63 166904.0508 158715.2351 138571.8121 142774.1463 153356.7555 0.952166991 1.159790661 1.094565058 0.962498587 1.030803172 1.088338432 1.034941269 0.903591183 0.930993524 1 17.22653219 -7.171807051 5.719851349 0.938480168 1.051148079 0.358439051 0.061894868 0.230054355 11.57647993 0.030075926 0.017081058 6.73E-08 7.171807051 0.11266791 S(ph)RS(ph)SSPVT(ph)ELASR ddPTM_HeLa_A486_30min_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.943)S(0.122)S(0.462)PVT(0.473)ELASR 155.08 1.82E-07 2082200000 517310 541980 306960 227190 394620 532330 591450 529080 436690 743210 TRUE FALSE FALSE 481049.2404 499031.5309 425823.1327 528909.8015 345123.0799 466656.5369 443462.9543 408620.0337 474542.6408 557105.3785 0.863479799 0.895757877 0.764349348 0.94938915 0.619493355 0.837645004 0.796012696 0.733469913 0.851800501 1 19.08759072 -4.748221096 24.97099836 0.806874642 0.879618865 0.043389862 0.10174491 603.5682067 1140196.172 0.024252668 0.063339262 1.79E-05 4.748221096 0.072744224 S(ph)RS(ph)T(ph)PVRDR ddPTM_HeLa_A485_30min_R1 1 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 3 0 S(1)RS(1)T(1)PVRDR 98 0.021092 625950000 442710 548530 455530 716310 838640 577290 847750 934160 474810 989320 TRUE FALSE FALSE 541189.3122 612675.8119 624049.5032 755440.2015 755142.057 607516.0117 666621.287 705055.7953 570100.0118 742700.7311 0.7286775 0.824929593 0.840243556 1.017152899 1.016751466 0.817982245 0.897563795 0.949313453 0.767603946 1 19.50242147 -4.665447919 1.963579426 0.918775836 0.738505348 0.362932224 0.0800767 0.449210968 3.072260959 0.022787484 0.109882708 2.16E-05 4.665447919 -0.180270488 S(ph)RS(ph)T(ph)PVRDR ddPTM_HeLa_A486_30min_R1 1 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 3 0 S(1)RS(1)T(1)PVRDR 59.864 0.0379 1713300000 998010 951270 828450 740330 1271900 1267800 1397000 1460900 872170 1628700 TRUE FALSE FALSE 928054.6527 875887.9007 1149248.027 1723525.654 1112366.442 1111391.726 1047455.824 1128284.961 947770.3978 1220862.919 0.760162864 0.717433454 0.941340759 1.411727416 0.911131319 0.910332936 0.857963501 0.924170063 0.776311888 1 20.21946979 -9.662931871 13.7845099 1.000006154 0.920759472 0.018470349 0.182654684 0 0 0.190060942 0.046096549 2.17E-10 9.662931871 -0.079246682 S(ph)RS(ph)T(ph)TPAPK ddPTM_HeLa_A485_30min_R1 1 SRSTTPAPK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.699)T(0.699)T(0.602)PAPK 89.403 0.021796 2025600000 1301700 1207500 562710 2683000 1011300 1278300 1950300 2264400 979330 3350900 TRUE FALSE FALSE 1591258.674 1348706.621 770879.8453 2829565.496 910611.4211 1345229.811 1533602.473 1709052.35 1175872.548 2515582.299 0.632560769 0.536140925 0.30644191 1.124815315 0.361988324 0.534758816 0.609641145 0.679386379 0.467435531 1 21.26246096 -10.79582501 2.654286326 1.118946862 0.585667063 0.257679988 0.211957537 96944876.7 72402913.75 74531695.28 0.052548237 1.60E-11 10.79582501 -0.533279799 S(ph)RS(ph)TNTAVSR ddPTM_HeLa_A486_30min_R1 1 SRSTNTAVSR 10 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 2 0 S(0.999)RS(0.575)T(0.381)NT(0.044)AVS(0.001)R 116.9 0.0017178 2793400000 1491100 1410400 799670 604920 1212100 1519300 1736700 1585400 1126600 2102500 TRUE FALSE FALSE 1386581.59 1298634.767 1109323.64 1408284.331 1060067.116 1331864.213 1302159.291 1224439.029 1224254.595 1576020.315 0.879799313 0.823996211 0.703876485 0.89356991 0.672622748 0.845080612 0.826232555 0.776918303 0.776801278 1 20.5878547 -10.41060613 7.188980126 1.000011689 0.798205561 0.444683407 0.067067241 1.19E-05 9.73E-07 0.061348152 0.014878251 3.89E-11 10.41060613 -0.201806128 S(ph)RS(ph)TPVRDR ddPTM_HeLa_A485_30min_R1 1 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(1)RS(0.575)T(0.425)PVRDR 89.433 0.013399 10483000000 3808900 6167400 3889900 4555300 4947100 5360900 6633400 9450900 4668700 6003500 TRUE FALSE FALSE 4656176.664 6888623.781 5328935.882 4804144.504 4454549.354 5641588.434 5216119.9 7133051.957 5605665.266 4506937.936 1.033113109 1.528448778 1.182385016 1.065944234 0.988376014 1.251756406 1.15735339 1.582682535 1.243785769 1 22.10371615 S(ph)RS(ph)TPVRDR ddPTM_HeLa_A486_30min_R1 1 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.999)RS(0.577)T(0.425)PVRDR 92.19 0.011748 6468100000 2643900 1554400 2199700 1046700 2263700 3104800 2628100 2190900 2509900 3015600 TRUE FALSE FALSE 2458576.263 1431223.683 3051482.75 2436770.497 1979765.638 2721761.343 1970521.583 1692079.897 2727460.153 2260474.132 1.087637425 0.633151985 1.349930401 1.077990879 0.875818754 1.204066574 0.871729322 0.748550878 1.206587642 1 21.10819398 S(ph)RS(ph)TS(ph)KTR ddPTM_HeLa_A486_30min_R1 1 SRSTSKTR 8 2 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 3 0 S(0.998)RS(0.993)T(0.114)S(0.84)KT(0.054)R 59.225 0.037109 800420000 1160400 689490 381300 1217700 584370 1737900 1594100 1071900 944860 3074500 TRUE FALSE FALSE 1079061.952 634852.3013 528949.5716 2834867.139 511072.8656 1523495.568 1195239.319 827851.7694 1026761.226 2304625.188 0.468215811 0.275468785 0.229516528 1.230077304 0.221759646 0.661060018 0.518626337 0.359213192 0.445522001 1 21.13610071 -11.02490803 2.552897564 1.588243086 0.491885313 0.230123773 0.279859901 73203916.13 29091059.17 252146614.8 0.070550925 9.44E-12 11.02490803 -1.096357773 S(ph)RS(ph)TTAHSWQR ddPTM_HeLa_A486_30min_R1 1 SRSTTAHSWQR 11 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 0 S(0.953)RS(0.92)T(0.119)T(0.008)AHSWQR 66.509 0.018756 371200000 191770 229310 162900 92865 225810 236750 308150 267980 182460 286640 TRUE FALSE FALSE 178327.9133 211138.6405 225979.2426 216194.4131 197486.8042 207542.1921 231047.6107 206966.804 198275.7797 214863.4783 0.829959166 0.982664165 1.05173408 1.006194328 0.919126907 0.96592587 1.075322863 0.963247945 0.922798892 1 17.71306075 -4.263867754 6.092384505 0.989108648 0.826061296 0.500685139 0.047192946 0.108291294 20.49803923 0.012318065 0.073591963 5.45E-05 4.263867754 -0.163047352 S(ph)RS(ph)TTPAPK ddPTM_HeLa_A485_30min_R1 1 SRSTTPAPK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RS(0.819)T(0.105)T(0.077)PAPK 94.767 0.011444 172580000 454860 470040 329480 807950 631930 506300 711080 702880 415290 1150000 TRUE FALSE FALSE 556042.0378 525007.0892 451368.3628 852086.2627 569012.8304 532809.0851 559151.949 530497.5779 498634.8937 863326.1642 0.644069485 0.608121369 0.522824839 0.986980701 0.659093694 0.617158505 0.647671728 0.614481062 0.577574171 1 19.71954619 -10.39050468 3.17499009 1.003958116 0.65559584 0.437519043 0.117966525 83586254.66 109010849.6 3054827.328 0.029684875 4.07E-11 10.39050468 -0.348362276 S(ph)RS(ph)WSK ddPTM_HeLa_A485_30min_R1 2 SRSWSK 6 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 2 0 S(1)RS(0.999)WS(0.001)K;S(0.999)RS(0.976)WS(0.025)K ; 70.1 0.0095157 212440000 164584 147506 97189 255064 177563 164160 235685 225331 130519 330198 TRUE FALSE FALSE 201195.143 164755.5436 133143.2555 268997.5005 159884.2043 172755.1638 185328.9744 170068.2189 156712.9661 247885.7154 0.811644764 0.664643153 0.537115482 1.085167413 0.6449916 0.696914558 0.747638782 0.686075108 0.632198454 1 17.91931561 -10.61178194 2.993087003 1.019065282 0.722991589 0.262646525 0.139270562 82753893.79 89264907.03 12400177.13 0.033638206 2.44E-11 10.61178194 -0.296073693 S(ph)RS(ph)YS(ph)PAHNR ddPTM_HeLa_A485_30min_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 S(0.973)RS(0.972)Y(0.11)S(0.946)PAHNR 94.017 0.0050422 1265800000 881640 967960 978570 1565500 1542900 1090400 1585100 1716200 966080 1861200 TRUE FALSE FALSE 1077757.776 1081154.502 1340583.765 1651019.301 1389283.459 1147491.658 1246430.436 1295299.259 1159963.395 1397237.093 0.771349245 0.773780275 0.959453318 1.181631456 0.994307599 0.821257655 0.892067955 0.927043281 0.830183654 1 20.41414542 -4.759557697 24.42613037 0.951219395 0.77256466 0.35319407 0.096446719 42.60434499 552990.4335 0.027578175 0.065719527 1.74E-05 4.759557697 -0.178654735 S(ph)RS(ph)YS(ph)PAHNR ddPTM_HeLa_A486_30min_R1 2 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 S(0.988)RS(0.963)Y(0.099)S(0.949)PAHNR;S(0.99)RS(0.927)Y(0.089)S(0.994)PAHNR ; 72.47 0.023833 14540900000 5270800 5639300 3845200 3383000 5925100 6076800 7579200 7017400 5079600 8274900 TRUE FALSE FALSE 4901344.138 5192421.33 5334164.418 7875794.967 5181918.709 5327106.2 5682803.995 5419691.209 5519903.818 6202811.179 0.790181096 0.837107753 0.85995918 1.269713802 0.83541455 0.858821274 0.916165885 0.873747572 0.889903571 1 22.56449078 -5.013999273 24.97263971 0.944043152 0.822366609 0.184954955 0.1175408 1175.71816 2097317.314 0.032759685 0.059895597 9.68E-06 5.013999273 -0.121676544 S(ph)RS(ph)YS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SRSYSPR 7 1 P62995;P62995-3;H7BXF3;H7C2L4;M0R088;Q8IYB3;Q13595;Q13595-3;Q13595-4;J3KTL2;Q07955;J3KSR8 P62995;M0R088;Q8IYB3;Q13595;J3KTL2 TRA2B;SRRM1;TRA2A;SRSF1 Transformer-2 protein homolog beta;Serine/arginine repetitive matrix protein 1;Transformer-2 protein homolog alpha;Serine/arginine-rich splicing factor 1 3 0 S(1)RS(0.981)Y(0.025)S(0.995)PR 112.64 0.026591 7978900000 217910 208380 155490 138050 226520 260190 259090 263450 200170 358200 TRUE FALSE FALSE 202635.6343 191867.2099 215699.8922 321387.3767 198107.7494 228090.4032 194262.9416 203468.1861 217520.8968 268504.3885 0.754682765 0.714577557 0.803338423 1.196953906 0.73781941 0.849484824 0.723500062 0.757783466 0.810120453 1 18.03458614 -11.46855944 2.028881671 2.62053732 0.818477646 0.144967809 0.133633851 8312745.739 586610.995 61926305.36 0.035192097 3.40E-12 11.46855944 -1.802059674 S(ph)RS(ph)YS(ph)RDYR ddPTM_HeLa_A485_30min_R1 2 SRSYSRDYR 9 2 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 0 S(0.999)RS(0.857)Y(0.407)S(0.733)RDY(0.005)R;S(0.916)RS(0.783)Y(0.304)S(0.977)RDY(0.02)R ; 75.483 0.0099348 1447880000 1052060 1069530 992050 1896550 2307020 1478760 2181100 2328050 1165900 2882100 TRUE FALSE FALSE 1286087.117 1194602.23 1359050.578 2000153.724 2077324.988 1556185.587 1715090.167 1757092.087 1399885.436 2163645.511 0.594407499 0.552124747 0.628129964 0.924436889 0.960104129 0.719242399 0.792685381 0.812097951 0.647003138 1 21.04503272 -5.120944988 5.28571807 0.826445883 0.577262562 0.549666069 0.101954935 0.1757516 6.84161689 0.028358185 0.05050048 7.57E-06 5.120944988 -0.249183321 S(ph)RS(ph)YSR ddPTM_HeLa_A486_30min_R1 1 SRSYSR 6 1 P62995;Q9UKJ3-2;Q9UKJ3;A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8;P30414;A0A087WYW3;Q8TF01;A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 P62995;Q9UKJ3-2;A0A2R8Y880;P30414;Q8TF01;A0A087X0H9 TRA2B;GPATCH8;RBBP6;NKTR;PNISR;RBM26 Transformer-2 protein homolog beta;G patch domain-containing protein 8;E3 ubiquitin-protein ligase RBBP6;NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase;Arginine/serine-rich protein PNISR;RNA-binding protein 26 2 0 S(0.999)RS(0.991)Y(0.008)S(0.002)R 68.893 0.03235 246270000 27139 29440 23957 13610 31945 33076 28774 28346 26885 37741 TRUE FALSE FALSE 25236.69625 27107.06718 33233.79199 31684.76781 27938.16022 28995.41941 21574.44086 21892.23459 29215.41345 28290.40795 0.892058407 0.958171661 1.174737107 1.119982712 0.987548864 1.024920512 0.762606213 0.77383948 1.032696789 1 14.78802536 -6.669426005 9.541506611 0.873639469 1.032969666 0.258649977 0.108979904 0.384831597 36.38026708 0.043423317 0.033590055 2.14E-07 6.669426005 0.159330197 S(ph)RS(ph)YT(ph)PEYR ddPTM_HeLa_A486_30min_R1 3 SRSYTPEYR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(0.992)RS(0.8)Y(0.285)T(0.923)PEYR;S(0.998)RS(0.751)Y(0.287)T(0.963)PEY(0.001)R;S(0.993)RS(0.722)Y(0.299)T(0.98)PEY(0.006)R ;; 101.43 0.010095 4364330000 3450150 3920480 2712900 1980860 3912880 4237860 4962280 4507190 3251930 5042790 TRUE FALSE FALSE 3208312.302 3609806.887 3763407.534 4611542.187 3422090.104 3715035.921 3720665.058 3481001.228 3533809.911 3780042.561 0.848750312 0.954964614 0.995599249 1.219970969 0.905304649 0.98280267 0.984291843 0.920889427 0.934859821 1 21.84997105 -7.127648948 6.433894137 0.946126564 0.990226201 0.022245055 0.092200667 0.966692493 46.25601782 0.045803254 0.026267724 7.45E-08 7.127648948 0.044099637 S(ph)RS(ph)YT(ph)PEYRR ddPTM_HeLa_A485_30min_R1 1 SRSYTPEYRR 10 2 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(0.944)RS(0.793)Y(0.273)T(0.97)PEY(0.02)RR 63.31 0.027924 3070800000 1103200 1329100 1092200 1393600 1993800 1480800 2014300 2277200 1221200 2001900 TRUE FALSE FALSE 1348603.034 1484526.683 1496250.23 1469728.839 1795290.271 1558332.398 1583928.35 1718713.129 1466283.638 1502863.172 0.897355833 0.987798963 0.995599771 0.977952528 1.194579989 1.036909033 1.053940491 1.143625821 0.975660104 1 20.51928223 -5.560488025 24.99987631 1.073688895 0.966967738 0.373007688 0.065105941 165.7222484 110159.0921 0.018427355 0.023789674 2.75E-06 5.560488025 -0.106721157 S(ph)RS(ph)YT(ph)PEYRR ddPTM_HeLa_A486_30min_R1 1 SRSYTPEYRR 10 2 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(0.792)RS(0.861)Y(0.35)T(0.997)PEYRR 62.357 0.03011 2863200000 1619600 1641100 1308600 964860 2153700 1691500 2490000 2443100 1489100 2526100 TRUE FALSE FALSE 1506074.404 1511053.259 1815324.966 2246242.841 1883562.864 1482819.928 1866975.663 1886859.462 1618176.387 1893548.118 0.795371604 0.798000983 0.958689641 1.186261294 0.994726696 0.783090704 0.985966845 0.99646766 0.854573682 1 20.85266065 -4.771849374 6.169093953 0.972881401 0.795090315 0.330330634 0.098767865 0.169617846 24.71356429 0.027481572 0.063990155 1.69E-05 4.771849374 -0.177791085 S(ph)RSDIDVNAAAGAK ddPTM_HeLa_A485_30min_R1 4 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.5)RS(0.5)DIDVNAAAGAK;S(0.5)RS(0.5)DIDVNAAAGAK;S(0.901)RS(0.099)DIDVNAAAGAK;S(0.5)RS(0.5)DIDVNAAAGAK ;;; 176.42 4.60E-13 17376700000 4216180 4117580 3503840 5019470 5394010 4850960 6742900 7283700 4108200 6640780 TRUE FALSE FALSE 5154054.695 4599095.163 4800056.223 5293670.936 4856963.425 5104948.765 5302224.331 5497361.155 4932678.057 4985355.76 1.033838896 0.922520956 0.962831231 1.061844167 0.974246104 1.023988861 1.063559871 1.102701877 0.989433512 1 22.24926503 -5.686554393 1.020753226 1.042875601 0.971753185 0.17457205 0.046743558 0.784737225 1.732006529 0.020870002 0.035232338 2.06E-06 5.686554393 -0.071122416 S(ph)RSDIDVNAAAGAK ddPTM_HeLa_A486_30min_R1 3 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.5)RS(0.5)DIDVNAAAGAK;S(0.706)RS(0.294)DIDVNAAAGAK;S(0.5)RS(0.5)DIDVNAAAGAK ;; 219.96 5.35E-28 12625900000 8509100 8015700 4761920 3243910 7976500 8250800 9946000 9501100 6115600 9447700 TRUE FALSE FALSE 7912656.031 7380506.739 6605862.953 7551986.418 6976012.992 7232900.184 7457405.602 7337906.938 6645705.132 7081934.426 1.11730151 1.042159712 0.932776634 1.06637339 0.985043432 1.021317023 1.053018166 1.036144434 0.938402523 1 22.75571205 -4.355128455 3.838587501 1.008314302 1.119313053 0.394883103 0.042138637 0.227843391 5.474270301 0.010323592 0.056937088 4.41E-05 4.355128455 0.110998751 S(ph)RSDIDVNAAASAK ddPTM_HeLa_A485_30min_R1 3 SRSDIDVNAAASAK 14 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.5)RS(0.5)DIDVNAAASAK;S(0.5)RS(0.5)DIDVNAAASAK;S(0.5)RS(0.5)DIDVNAAASAK ;; 235.24 1.88E-35 6614000000 3255970 3445900 2582260 3532600 4007200 3617500 4961800 5184000 2982060 4605700 TRUE FALSE FALSE 3980249.294 3848868.03 3537545.431 3725576.993 3608229.098 3806906.706 3901670.896 3912615.872 3580532.089 3457583.752 1.151164969 1.11316697 1.023126462 1.077508821 1.043569544 1.101030945 1.128438579 1.131604078 1.035559034 1 21.72133277 -7.962637075 5.869217815 1.000164977 1.092981508 0.422300316 0.037664596 0.162541429 14.01586473 0.039185983 0.010177048 1.09E-08 7.962637075 0.092816531 S(ph)RSDIDVNAAASAK ddPTM_HeLa_A486_30min_R1 3 SRSDIDVNAAASAK 14 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.5)RS(0.5)DIDVNAAASAK;S(0.5)RS(0.5)DIDVNAAASAK;S(0.717)RS(0.283)DIDVNAAASAK ;; 231.4 9.74E-29 4699200000 5330200 5183000 3307240 1886180 5527900 5402600 6197900 5892900 4195050 6347100 TRUE FALSE FALSE 4956580.505 4772280.204 4587891.899 4391122.362 4834539.236 4736082.142 4647119.865 4551215.311 4558680.312 4757744.847 1.041791997 1.003055094 0.964299694 0.922941962 1.016140922 0.995446854 0.976748442 0.956590876 0.958159897 1 22.18184647 -4.456632704 2.98008814 0.972984541 1.041779809 0.417853732 0.024967801 0.292687926 4.539165244 0.006811492 0.037619668 3.49E-05 4.456632704 0.068795268 S(ph)RSDITQVDWR ddPTM_HeLa_A485_30min_R1 4 SRSDITQVDWR 11 1 C9J119;Q6ZWE6-3;Q6ZWE6-2;Q6ZWE6 C9J119 PLEKHM3 Pleckstrin homology domain-containing family M member 3 1 0 S(0.5)RS(0.5)DITQVDWR;S(0.5)RS(0.5)DITQVDWR;S(0.5)RS(0.5)DITQVDWR;S(0.5)RS(0.5)DITQVDWR ;;; 112.5 0.00022702 257793000 567022 817640 852140 606919 931480 788390 905880 966970 701450 800230 TRUE FALSE FALSE 693154.0877 913255.8855 1167382.047 640073.4482 838738.5806 829668.8813 712331.3376 729819.0913 842224.5809 600747.3881 1.153819561 1.520199511 1.943216183 1.065461891 1.396158514 1.381061154 1.18574188 1.214851876 1.401961286 1 19.19639895 -5.296665151 24.99980546 1.254730158 1.53719114 0.286438119 0.218361434 796.2635871 565108.1925 0.061363139 0.091019941 5.05E-06 5.296665151 0.282460983 S(ph)RSDITQVDWR ddPTM_HeLa_A486_30min_R1 3 SRSDITQVDWR 11 1 C9J119;Q6ZWE6-3;Q6ZWE6-2;Q6ZWE6 C9J119 PLEKHM3 Pleckstrin homology domain-containing family M member 3 1 0 S(0.5)RS(0.5)DITQVDWR;S(0.5)RS(0.5)DITQVDWR;S(0.5)RS(0.5)DITQVDWR ;; 131.86 1.81E-05 384040000 687810 743630 646130 226887 833770 686490 752380 785830 653330 761350 TRUE FALSE FALSE 639598.0709 684702.0505 896328.84 528204.4022 729190.792 601797.8435 564126.5661 606913.6635 709961.1704 570703.0044 1.120719649 1.199751964 1.570569689 0.925532892 1.277706244 1.05448515 0.988476601 1.063449218 1.244011622 1 19.12238063 -5.286161503 24.99998247 1.085212615 1.287287726 0.309318562 0.148815858 968.7088356 979594.462 0.041575538 0.061698103 5.17E-06 5.286161503 0.202075111 S(ph)RSESETSTMAAK ddPTM_HeLa_A485_30min_R1 4 SRSESETSTMAAK 13 1 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.498)RS(0.498)ES(0.004)ETSTMAAK;S(0.492)RS(0.492)ES(0.016)ETSTMAAK;S(0.496)RS(0.496)ES(0.008)ETSTMAAK;S(0.497)RS(0.497)ES(0.006)ETSTMAAK ;;; 201.9 8.36E-22 2990370000 2552340 2471200 2137100 2912900 3628280 2698820 3788440 3567620 2502730 3850240 TRUE FALSE FALSE 3120099.228 2760185.343 2927702.222 3072024.351 3267035.704 2840126.042 2979008.845 2692655.601 3005004.955 2890446.026 1.079452513 0.954934055 1.012889428 1.062820175 1.130287739 0.982590928 1.030639845 0.931570967 1.039633651 1 21.4628607 -10.48082831 7.126531166 0.99999542 1.022946795 0.016453184 0.055988853 4.17E-06 3.04E-07 0.055482037 0.013453686 3.31E-11 10.48082831 0.022951375 S(ph)RSESETSTMAAK ddPTM_HeLa_A486_30min_R1 6 SRSESETSTMAAK 13 1 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.498)RS(0.498)ES(0.005)ETSTMAAK;S(0.499)RS(0.499)ES(0.001)ETSTMAAK;S(0.496)RS(0.496)ES(0.008)ETSTMAAK;S(0.5)RS(0.5)ES(0.001)ETSTMAAK;S(0.416)RS(0.416)ES(0.167)ET(0.001)STMAAK;S(0.49)RS(0.49)ES(0.021)ETSTMAAK ;;;;; 180.78 2.19E-17 4232850000 4298790 4302710 2813440 1778404 4818510 4714620 5381680 5274630 3352220 5094410 TRUE FALSE FALSE 3997467.02 3961747.589 3902879.315 4140214.388 4214127.545 4132978.119 4035126.742 4073711.893 3642793.129 3818736.577 1.046803554 1.037449824 1.022034182 1.084184338 1.103539734 1.0822894 1.056665382 1.066769548 0.953926267 1 21.86466397 -7.753575603 24.99988261 0.976963127 1.062845701 0.654573969 0.024844057 102.508268 325893.2581 0.019359245 0.00701708 1.76E-08 7.753575603 0.085882574 S(ph)RSFTLDDESLK ddPTM_HeLa_A485_30min_R1 1 SRSFTLDDESLK 12 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(0.567)RS(0.418)FT(0.015)LDDESLK 185.33 2.81E-13 339480000 527410 468950 420790 648910 674790 602130 815930 765450 495290 982470 TRUE FALSE FALSE 644730.535 523789.6232 576457.7315 684358.3102 607605.5383 633656.5957 641599.89 577722.1873 594690.1599 737558.31 0.874141781 0.710167069 0.781575807 0.92787011 0.823806782 0.859127458 0.869897175 0.783290188 0.80629579 1 19.49239759 -11.67845074 2.073103746 5.451987639 0.825419144 0.449038667 0.057734805 3616702.912 77110.90394 76923690.58 0.015350782 2.10E-12 11.67845074 -4.626568495 S(ph)RSFTLDDESLK ddPTM_HeLa_A486_30min_R1 2 SRSFTLDDESLK 12 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(0.684)RS(0.316)FTLDDESLK;S(0.549)RS(0.379)FT(0.072)LDDESLK ; 186.72 2.47E-13 322360000 666922 644013 397301 335954 693750 727071 951692 908560 500106 955604 TRUE FALSE FALSE 620174.2118 592979.0644 551146.5873 782117.8902 606733.406 637372.3723 713568.5956 701700.7217 543455.5907 716314.5385 0.865784761 0.82781939 0.769419798 1.091863767 0.847020929 0.889793991 0.996166568 0.979598604 0.758682899 1 19.4502337 -5.197835943 24.99999837 0.933416931 0.821689111 0.261580225 0.089566959 306.1512232 120334.9272 0.023666675 0.040991879 6.34E-06 5.197835943 -0.111727821 S(ph)RSFTSSYAISAANHVK ddPTM_HeLa_A486_30min_R1 1 SRSFTSSYAISAANHVK 17 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.594)RS(0.395)FT(0.008)S(0.002)S(0.002)YAISAANHVK 132.48 6.26E-06 521330000 250460 176290 136390 38960 249090 244240 291300 344720 225510 269800 TRUE FALSE FALSE 232904.0474 162320.1384 189203.8607 90700.84893 217846.8095 214108.1521 218413.6589 266234.7812 245057.3884 202240.3239 1.151620225 0.802610158 0.935539743 0.448480536 1.077168021 1.058681809 1.079970872 1.316427783 1.211713785 1 17.62571115 -5.976392129 24.99721895 1.140701865 0.829909319 0.383378389 0.180837967 236.7514522 250683.3626 0.056532099 0.064098216 1.06E-06 5.976392129 -0.310792545 S(ph)RSGEGEVSGLMR ddPTM_HeLa_A485_30min_R1 1 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(0.62)RS(0.38)GEGEVSGLMR 144.68 4.67E-08 837470000 261180 332430 315080 300740 443190 347400 417780 469100 302610 410950 TRUE FALSE FALSE 319278.5899 371304.7967 431641.2036 317168.6647 399064.4475 365589.3268 328517.8901 354052.4895 363341.0513 308507.728 1.034912778 1.20355104 1.399126065 1.028073646 1.293531446 1.185024859 1.064861137 1.14762924 1.177737276 1 18.2349471 -6.642520988 7.042424759 1.110282099 1.199126689 0.137082731 0.111964637 0.488814417 28.160167 0.042358905 0.032657478 2.28E-07 6.642520988 0.08884459 S(ph)RSGEGEVSGLMR ddPTM_HeLa_A486_30min_R1 3 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(0.852)RS(0.148)GEGEVSGLMR;S(0.764)RS(0.236)GEGEVSGLMR;S(0.5)RS(0.5)GEGEVSGLMR ;; 216.72 2.93E-23 0 590127 622742 536022 238855 787870 656570 696960 759540 541343 605893 TRUE FALSE FALSE 548762.1447 573393.6559 743584.0736 556066.5111 689047.998 575569.0689 522573.2363 586609.3226 588267.0471 454173.4491 1.208265577 1.262499288 1.637224886 1.224348346 1.517147247 1.267289116 1.150602787 1.291597569 1.29524755 1 18.79288384 -6.511925508 23.34319667 1.208702328 1.372848261 0.258701856 0.146057418 342.6719227 730297.7496 0.052355456 0.043423117 3.08E-07 6.511925508 0.164145934 S(ph)RSGS(ph)QGRTDSVEK ddPTM_HeLa_A486_30min_R1 1 SRSGSQGRTDSVEK 14 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 S(0.751)RS(0.26)GS(0.951)QGRT(0.033)DS(0.005)VEK 102.07 0.002022 673270000 1155800 1079900 753040 774250 1642100 1385500 1893100 2005500 943830 1749800 TRUE FALSE FALSE 1074784.389 994324.7911 1044637.255 1802493.128 1436132.506 1214571.097 1419426.357 1548891.43 1025641.944 1311638.691 0.819421077 0.758078271 0.796436749 1.374229917 1.094914717 0.925995173 1.082177864 1.180882693 0.781954628 1 20.32293893 -5.056419491 24.99937324 1.0682733 0.785875803 0.41733458 0.146960576 252.8588822 112040.8831 0.039566909 0.068532232 8.78E-06 5.056419491 -0.282397497 S(ph)RSGS(ph)S(ph)PEVDSK ddPTM_HeLa_A486_30min_R1 1 SRSGSSPEVDSK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.593)RS(0.408)GS(0.998)S(0.999)PEVDS(0.003)K 150.92 1.15E-06 318920000 888720 864550 517110 643180 933720 1200000 1298500 1231800 753940 1495300 TRUE FALSE FALSE 826425.3174 796039.9094 717348.8407 1497355.545 816604.131 1051956.201 973601.5659 951346.03 819292.1262 1120867.147 0.737308895 0.710200055 0.639994528 1.335890295 0.728546762 0.938519969 0.868614597 0.848758956 0.730944901 1 20.09618386 S(ph)RSGS(ph)S(ph)PGLR ddPTM_HeLa_A486_30min_R1 1 SRSGSSPGLR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.259)GS(0.747)S(0.994)PGLR 101.97 0.00026632 0 371130 363960 294210 145660 378770 382010 376740 374840 347770 436180 TRUE FALSE FALSE 345115.7035 335118.4841 408135.9912 339103.8412 331261.1347 334881.4902 282475.6673 289497.1147 377914.9836 326957.6889 1.055536282 1.02495979 1.248283815 1.037149003 1.013162088 1.024234944 0.863951749 0.885426844 1.155852871 1 18.31874443 -5.74278676 2.409806197 0.975279043 1.104098534 0.231657557 0.0935483 0.405881578 4.830415504 0.031464784 0.040478522 1.81E-06 5.74278676 0.128819491 S(ph)RSHS(ph)DNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 2 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.574)RS(0.494)HS(0.93)DNDRPNCS(0.002)WNTQYSSAYYTSR;S(0.509)RS(0.509)HS(0.827)DNDRPNCS(0.154)WNT(0.001)QYSSAYYTSR ; 222.71 2.23E-38 2592630000 184196 280950 211211 285009 302526 290993 341374 410129 225738 356970 TRUE FALSE FALSE 225169.7647 313804.6586 289346.7381 300578.32 272405.4492 306228.9435 268436.6561 309544.2197 271041.546 267983.9485 0.840236014 1.170983039 1.079716676 1.121628074 1.016499125 1.142713753 1.001689309 1.155084927 1.011409629 1 18.03178706 -4.247868711 24.81531542 1.081765794 0.840235838 0.552820399 0.063992882 1451.410107 2653999.434 0.014388986 0.277969055 5.65E-05 4.247868711 -0.241529956 S(ph)RSHSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 3 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.586)RS(0.373)HS(0.041)DNDRPNCSWNTQYSSAYYTSR;S(0.456)RS(0.366)HS(0.179)DNDRPNCSWNTQYSSAYYTSR;S(0.623)RS(0.363)HS(0.014)DNDRPNCSWNTQYSSAYYTSR ;; 284.44 1.62E-76 6619800000 401935 623610 569560 317454 903190 742840 755230 968940 599020 539260 TRUE FALSE FALSE 491344.0541 696535.7648 780263.9454 334795.7082 813265.2323 781733.9538 593868.9408 731305.9458 719237.8195 404832.4063 1.213697437 1.720553379 1.927375213 0.826998291 2.008893605 1.931006366 1.466950105 1.806441219 1.776631041 1 18.62696526 -10.10495965 4.82049253 0.999969033 1.638937004 0.225485638 0.350528201 232304542 2.773918121 79852.38993 0.083084263 7.85E-11 10.10495965 0.638967971 S(ph)RSHSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A486_30min_R1 3 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.644)RS(0.353)HS(0.002)DNDRPNCSWNTQYSSAYYTSR;S(0.333)RS(0.333)HS(0.333)DNDRPNCS(0.001)WNTQYSSAYYTSR;S(0.496)RS(0.496)HS(0.008)DNDRPNCSWNTQYSSAYYTSR ;; 330.59 8.37E-124 4691820000 572750 526910 645490 51633 899240 586653 634600 645830 511460 382066 TRUE FALSE FALSE 532603.1827 485155.7326 895441.0148 120204.2334 786448.9341 514277.7175 475816.3679 498788.6074 555793.7646 286394.1868 1.859685731 1.694013898 3.126603319 0.419716038 2.746036653 1.79569887 1.661403722 1.741615684 1.940660077 1 18.12764268 -11.08871026 0.293695474 3.17E-11 1.967662816 0.137015241 0.673566552 70.24935374 2.998278533 48.27102284 0.706394324 8.15E-12 11.08871026 1.967662816 S(ph)RSHTSEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A485_30min_R1 2 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.25)RS(0.25)HT(0.25)S(0.25)EGAHLDITPNSGAAGNSAGPK;S(0.32)RS(0.225)HT(0.225)S(0.225)EGAHLDIT(0.003)PNSGAAGNSAGPK ; 110.83 0.00022009 1038750000 201143 567310 404870 88340 609960 436110 479530 798710 372210 210164 TRUE FALSE FALSE 245886.5664 633651.9696 554648.261 93165.79051 549230.2407 458944.0452 377074.4981 602825.1202 446909.1329 157773.9826 1.558473472 4.016200638 3.515460864 0.590501609 3.481120472 2.908870257 2.389966279 3.820814499 2.832590809 1 17.26749979 S(ph)RSHTSEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A486_30min_R1 1 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.249)RS(0.249)HT(0.249)S(0.249)EGAHLDIT(0.004)PNSGAAGNSAGPK 91.583 0.001933 475980000 132860 130250 126060 14270 176210 92392 111850 117260 124860 40857 TRUE FALSE FALSE 123547.2001 119928.5156 174873.808 33221.28117 154108.0987 80993.61441 83863.94697 90562.45777 135682.9653 30626.14127 4.034043957 3.915887235 5.709952373 1.084736104 5.031913664 2.644590897 2.73831255 2.957031282 4.430299075 1 14.90247599 -9.449624301 0.196370035 1.48E-18 4.383749834 0.270595527 1.267721564 19.82476325 1.127181512 21.1369744 4.27882983 3.55E-10 9.449624301 4.383749834 S(ph)RSKEDS(ph)RR ddPTM_HeLa_A486_30min_R1 1 SRSKEDSRR 9 3 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 S(0.758)RS(0.255)KEDS(0.986)RR 56.956 0.036673 694530000 1176500 469290 337090 1224200 424240 1759100 1307100 932310 1093600 3176000 TRUE FALSE FALSE 1094033.425 432101.7513 467620.2756 2849999.468 371027.8633 1542080.127 980049.7549 720043.3652 1188394.129 2380708.928 0.459541027 0.181501294 0.1964206 1.197122183 0.155847638 0.647739885 0.41166299 0.302449139 0.499176575 1 21.18295981 -11.19748475 1.675585535 2.181687225 0.448444197 0.243336804 0.290858825 813381.4323 140163.025 3633041.399 0.077817735 6.35E-12 11.19748475 -1.733243028 S(ph)RSPAPPADK ddPTM_HeLa_A485_30min_R1 4 SRSPAPPADK 10 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.605)RS(0.395)PAPPADK;S(0.582)RS(0.418)PAPPADK;S(0.5)RS(0.5)PAPPADK;S(0.5)RS(0.5)PAPPADK ;;; 77.776 0.0019008 2173790000 3039110 2986430 2144790 3614270 2601500 2730260 3239130 2896300 2369970 4241500 TRUE FALSE FALSE 3715149.535 3335667.01 2938237.073 3811708.418 2342485.526 2873212.192 2547063.414 2185977.884 2845601.24 3184172.109 1.166755253 1.047577485 0.922763272 1.197079896 0.735665487 0.902341988 0.799913864 0.686513734 0.893670676 1 21.60248689 -5.767266801 24.99995214 0.822154333 1.069490611 0.552215659 0.108303143 104.3437552 447639.6291 0.03228827 0.037589351 1.71E-06 5.767266801 0.247336278 S(ph)RSPAPPADK ddPTM_HeLa_A486_30min_R1 6 SRSPAPPADK 10 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.615)RS(0.385)PAPPADK;S(0.605)RS(0.395)PAPPADK;S(0.5)RS(0.5)PAPPADK;S(0.5)RS(0.5)PAPPADK;S(0.5)RS(0.5)PAPPADK;S(0.5)RS(0.5)PAPPADK ;;;;; 87.519 0.0017659 4223470000 4766600 5095990 3209270 1647162 3981030 4544730 4822130 4382430 4055660 5834620 TRUE FALSE FALSE 4432485.955 4692165.193 4451985.291 3834676.379 3481692.096 3984047.42 3615582.071 3384646.357 4407207.874 4373593.175 1.013465537 1.072839884 1.017923962 0.876779395 0.796071321 0.91093233 0.826684588 0.773882303 1.007685831 1 22.0603876 -5.231608508 4.273474047 0.869446617 1.042556085 0.451308106 0.074889157 0.165533383 7.184889075 0.020043797 0.034568065 5.87E-06 5.231608508 0.173109468 S(ph)RSPAPPADKEAEKPVFFPAFAAEAQK ddPTM_HeLa_A485_30min_R1 2 SRSPAPPADKEAEKPVFFPAFAAEAQK 27 3 C9J0Q5;C9JE98;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 1 0 S(0.567)RS(0.433)PAPPADKEAEKPVFFPAFAAEAQK;S(0.672)RS(0.328)PAPPADKEAEKPVFFPAFAAEAQK ; 155.11 1.85E-09 1698900000 1023594 537560 413719 1711828 989752 987170 1613436 1229944 754517 2514953 TRUE FALSE FALSE 1251288.954 600422.9658 566770.8744 1805340.829 891208.8156 1038856.695 1268712.218 928298.3055 905941.6411 1888021.501 0.662751432 0.318017017 0.300193019 0.95620777 0.472033192 0.550235627 0.671979751 0.491677825 0.479836506 1 20.84844376 -10.59757776 2.977298945 1.028939278 0.543210018 0.366034559 0.179720716 110324240.1 116933839.9 25027423.16 0.044806801 2.53E-11 10.59757776 -0.48572926 S(ph)RSPAPPADKEAEKPVFFPAFAAEAQK ddPTM_HeLa_A486_30min_R1 1 SRSPAPPADKEAEKPVFFPAFAAEAQK 27 3 C9J0Q5;C9JE98;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 1 0 S(0.5)RS(0.5)PAPPADKEAEKPVFFPAFAAEAQK 72.459 0.0089867 1216000000 1158300 1044500 365800 679570 923990 1477900 1818000 1697500 861000 1819300 TRUE FALSE FALSE 1077109.151 961730.016 507447.5565 1582073.304 808094.5583 1295571.724 1363117.171 1311016.306 935632.1732 1363735.438 0.78982266 0.705217441 0.372101173 1.160102802 0.592559624 0.950016908 0.999546637 0.961342112 0.686080413 1 20.37913236 -5.260981557 24.99999665 0.89801711 0.630664142 0.337862031 0.18222998 49.86250732 2722741.582 0.0492114 0.079002098 5.48E-06 5.260981557 -0.267352968 S(ph)RSPAYSR ddPTM_HeLa_A485_30min_R1 1 SRSPAYSR 8 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 S(0.609)RS(0.391)PAYSR 62.408 0.01417 354400000 10844 14722 9898.5 8885.4 12337 11406 14761 17470 10773 13790 TRUE FALSE FALSE 13256.21039 16443.60984 13560.36706 9370.786903 11108.68496 12003.20052 11607.19176 13185.45511 12935.04228 10352.40679 1.280495508 1.588385211 1.309875794 0.905179549 1.073053367 1.159459899 1.121207078 1.273660839 1.249471988 1 13.33767859 -5.00676154 24.31121172 1.122635935 1.438112974 0.535171835 0.123476413 163.7582846 588806.8641 0.033271169 0.065322447 9.85E-06 5.00676154 0.315477038 S(ph)RSPES(ph)QVIGENTK ddPTM_HeLa_A486_30min_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.943)RS(0.112)PES(0.945)QVIGENTK 142.35 2.02E-05 0 396330 465090 184750 234590 356320 578600 639410 534700 375420 653620 TRUE FALSE FALSE 368549.3137 428234.5746 256290.1478 546137.3755 311627.023 507218.2148 479422.855 412960.4824 407961.7079 489949.2976 0.752219292 0.874038552 0.523095245 1.114681413 0.63603933 1.035246335 0.978515241 0.842863709 0.832661073 1 18.90227293 -5.262087504 24.99999996 0.908861907 0.732209794 0.279317771 0.148435721 84.85084404 3272977.074 0.039503803 0.062754582 5.47E-06 5.262087504 -0.176652113 S(ph)RSPES(ph)QVIGENTKQP ddPTM_HeLa_A485_30min_R1 2 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.94)RS(0.077)PES(0.983)QVIGENTKQP;S(0.915)RS(0.087)PES(0.998)QVIGENTKQP ; 167.97 1.18E-10 2586510000 1066380 1082060 675210 1483130 1538970 1280320 2133960 2206700 876560 1981640 TRUE FALSE FALSE 1303592.552 1208597.504 924998.2768 1564149.636 1385744.743 1347355.575 1678022.013 1665503.365 1052477.552 1487653.617 0.876274246 0.812418624 0.621783368 1.051420585 0.931496907 0.905691728 1.127965538 1.119550509 0.707474871 1 20.50460722 -5.276436691 24.9721555 0.983979382 0.774384722 0.35402713 0.128206819 842.4304249 1402736.543 0.036217337 0.053962412 5.29E-06 5.276436691 -0.20959466 S(ph)RSPES(ph)QVIGENTKQP ddPTM_HeLa_A486_30min_R1 2 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.865)RS(0.136)PES(1)QVIGENTKQP;S(0.896)RS(0.122)PES(0.982)QVIGENTKQP ; 147.16 1.69E-06 637480000 1175440 1053680 501270 652440 1098330 1156460 1635840 1600430 743670 1800260 TRUE FALSE FALSE 1093047.726 970182.5594 695375.1685 1518913.292 960567.2099 1013787.723 1226535.53 1236047.026 808131.9144 1349463.178 0.80998707 0.718939631 0.515297623 1.125568535 0.711814316 0.751252601 0.90890626 0.915954615 0.598854365 1 20.36395418 -14 0.168613856 1.75098959 0.742028619 0.116434629 0.165319059 300.142962 2.819898713 76.64332824 0.607742499 1.00E-14 14 -1.008960971 S(ph)RSPGRPPK ddPTM_HeLa_A485_30min_R1 1 SRSPGRPPK 9 2 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 S(0.5)RS(0.5)PGRPPK 55.549 0.018218 67624000 161130 148530 57072 137300 52141 125900 126050 372130 127000 445290 TRUE FALSE FALSE 196972.8126 165899.2915 78185.30776 144800.3513 46949.65896 132491.9293 99118.38777 280864.534 152487.7351 334287.398 0.589231942 0.496277432 0.233886495 0.433161263 0.14044699 0.396341382 0.296506504 0.840188819 0.456157594 1 18.35072944 -8.003956915 0.833384536 0.979585665 0.365199751 0.518680692 0.174267405 0.514304527 0.811687753 0.166057674 0.060355512 9.91E-09 8.003956915 -0.614385914 S(ph)RSPGRPPK ddPTM_HeLa_A486_30min_R1 1 SRSPGRPPK 9 2 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 S(0.5)RS(0.5)PGRPPK 61.344 0.012954 25801000 88665 31886 47674 25564 32920 99264 54086 38989 80529 83923 TRUE FALSE FALSE 82450.04137 29359.23723 66134.64955 59514.28393 28790.86663 87017.81692 40553.11074 30112.05582 87509.31856 62908.13455 1.310641969 0.466700172 1.051289313 0.946050687 0.457665242 1.383252222 0.644640173 0.478667124 1.391065228 1 15.94095896 -7.778793546 24.99972979 1.195532478 0.838877215 0.153111389 0.332158902 503.2229747 724902.7145 0.298753505 0.077877565 1.66E-08 7.778793546 -0.356655264 S(ph)RSPGSPVGEGTGSPPK ddPTM_HeLa_A485_30min_R1 1 SRSPGSPVGEGTGSPPK 17 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 S(0.432)RS(0.306)PGS(0.263)PVGEGTGSPPK 110.14 7.83E-05 1076100000 290810 306190 313150 402460 403310 334410 439970 398790 301920 486620 TRUE FALSE FALSE 355499.6812 341996.257 428997.2163 424445.3707 363155.0403 351919.1905 345966.8153 300986.1272 362512.5746 365314.5896 0.973132996 0.936169172 1.174322703 1.161862632 0.994088522 0.96333188 0.947038047 0.823909408 0.992329858 1 18.47877985 -6.146116529 2.953881541 0.932590092 1.061126479 0.292030117 0.082664348 0.343175201 5.756853566 0.031571338 0.031532627 7.14E-07 6.146116529 0.128536387 S(ph)RSPHEAGFCVYLK ddPTM_HeLa_A485_30min_R1 2 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(0.5)RS(0.5)PHEAGFCVYLK;S(0.5)RS(0.5)PHEAGFCVY(0.001)LK ; 122.01 2.46E-05 844810000 694100 643250 554880 487350 988160 565740 663660 735060 445380 573080 TRUE FALSE FALSE 848500.1504 718472.492 760153.2025 513972.6965 889775.3208 595361.2716 521863.6194 554785.3825 534763.6807 430221.7028 1.972239301 1.670005226 1.76688716 1.194669384 2.068178604 1.383847602 1.213010911 1.289533696 1.242995593 1 18.71472078 -5.121497237 0.185722351 0.863983884 2.481251794 0.564035837 0.227909976 8.966609077 0.431829397 0.710741301 3.556652853 7.56E-06 5.121497237 1.617267911 S(ph)RSPHEAGFCVYLK ddPTM_HeLa_A486_30min_R1 1 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(0.644)RS(0.356)PHEAGFCVYLK 149.36 3.03E-08 849890000 654070 624770 331080 418460 626770 689070 931820 839200 585670 1122600 TRUE FALSE FALSE 608223.0706 575260.9498 459283.0426 974196.0278 548154.6622 604059.5494 698668.7802 648132.4796 636436.3472 841493.6531 0.722789849 0.683618881 0.545795017 1.157698604 0.65140677 0.717842074 0.830272192 0.770216718 0.756317466 1 19.68259286 -14 0.181047168 1.959722697 0.713067499 0.191246378 0.150999275 237.0348817 2.285479444 82.15594382 0.466038249 1.00E-14 14 -1.246655197 S(ph)RSPIER ddPTM_HeLa_A485_30min_R1 1 SRSPIER 7 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 S(0.625)RS(0.375)PIER 67.726 0.011187 160300000 36537 56959 46784 46616 53441 49285 49739 57806 54493 56523 TRUE FALSE FALSE 44664.5296 63619.85957 64091.34844 49162.51404 48120.2264 51865.48639 39111.85632 43628.98786 65429.24526 42432.85633 1.052593048 1.499306553 1.510417964 1.158595445 1.134032223 1.22229543 0.921735177 1.028188806 1.541947701 1 15.37289418 -5.377405103 7.296837829 1.136993503 1.367905856 0.193238357 0.196300523 0.396676883 22.48916602 0.05524771 0.082137256 4.19E-06 5.377405103 0.230912352 S(ph)RSPIER ddPTM_HeLa_A486_30min_R1 2 SRSPIER 7 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 S(0.625)RS(0.375)PIER;S(0.641)RS(0.359)PIER ; 78.655 0.0067225 1825290000 335070 224597 328067 123293 289649 439624 303583 297521 346465 381993 TRUE FALSE FALSE 311583.3233 206799.1158 455103.3283 287032.3349 253318.5216 385387.6606 227623.3224 229781.9631 376496.8652 286339.4664 1.088160592 0.722216599 1.589383867 1.002419745 0.88467903 1.345911779 0.79494219 0.802480936 1.314861936 1 18.12736701 -6.787060419 24.99997023 0.96161153 1.095319104 0.052038243 0.260482994 777.2882251 758438.6928 0.108069828 0.072889827 1.63E-07 6.787060419 0.133707574 S(ph)RSPIIHS(ph)PK ddPTM_HeLa_A485_30min_R1 4 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 0 S(0.881)RS(0.12)PIIHS(0.999)PK;S(0.599)RS(0.421)PIIHS(0.98)PK;S(0.5)RS(0.5)PIIHS(1)PK;S(0.728)RS(0.352)PIIHS(0.92)PK ;;; 78.285 0.0096167 3876580000 6378300 6290400 4367660 9741500 8162400 7244700 10542000 10100600 5315550 12245200 TRUE FALSE FALSE 7797130.83 7026007.561 5983439.187 10273653.48 7349722.796 7624021.29 8289615.58 7623412.013 6382332.128 9192696.996 0.848187516 0.764303182 0.650890505 1.117588612 0.799517573 0.829356313 0.901760994 0.829290035 0.694282878 1 23.13205676 -11.5333797 2.288877631 3.838198045 0.829360006 0.158553511 0.119955106 12090602.73 1210137.011 177343527.4 0.031394653 2.93E-12 11.5333797 -3.008838039 S(ph)RSPIIHS(ph)PK ddPTM_HeLa_A486_30min_R1 3 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 0 S(0.904)RS(0.099)PIIHS(0.997)PK;S(0.88)RS(0.125)PIIHS(0.995)PK;S(0.575)RS(0.425)PIIHS(1)PK ;; 72.642 0.0091045 2356730000 5867300 5116100 2620180 2873060 4659900 5926600 7440900 6692700 4151200 8840800 TRUE FALSE FALSE 5456032.569 4710681.603 3634783.867 6688628.876 4075411.89 5195436.349 5579108.118 5168918.311 4511029.358 6627006.136 0.823302779 0.710831031 0.548480534 1.00929873 0.614970291 0.783979408 0.841874597 0.779977897 0.680703966 1 22.65992582 -11.0802963 2.51091214 1.389884317 0.754990301 0.267591122 0.121685411 11081519.61 4451545.665 24672146.25 0.029973577 8.31E-12 11.0802963 -0.634894016 S(ph)RSPIIHSPK ddPTM_HeLa_A486_30min_R1 2 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 S(0.631)RS(0.369)PIIHSPK;S(0.603)RS(0.392)PIIHS(0.005)PK ; 95.264 0.00033002 486840000 612010 592060 386580 205881 582150 568920 652730 642100 493750 644820 TRUE FALSE FALSE 569111.2594 545143.0094 536274.129 479301.3726 509131.3187 498732.4348 489410.0501 495907.8469 536548.6475 483352.8749 1.177423967 1.127836489 1.109487823 0.99161792 1.053332555 1.031818493 1.01253158 1.025974754 1.11005577 1 18.8827173 -4.971492071 2.559550407 1.033435619 1.156278136 0.683870215 0.03359905 0.157302333 2.061650983 0.009203628 0.022429568 1.07E-05 4.971492071 0.122842517 S(ph)RSPITTNHRPS(ph)PDPEQRPLR ddPTM_HeLa_A485_30min_R1 1 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 2 0 S(0.499)RS(0.499)PIT(0.037)T(0.004)NHRPS(0.961)PDPEQRPLR 98.657 0.00030905 1481400000 80060 112410 110190 90195 134120 81411 120380 107840 95235 120730 TRUE FALSE FALSE 97869.0708 125555.3717 150953.8664 95122.12446 120766.5419 85673.55407 94659.82959 81392.07091 114347.791 90634.23287 1.079824562 1.38529745 1.665528152 1.049516518 1.332460573 0.945267052 1.044415852 0.898027912 1.261640192 1 16.46776844 -5.937514531 1.600276377 1.027870602 1.350970496 0.32177683 0.187496884 0.423015838 2.223397804 0.071698085 0.083673075 1.15E-06 5.937514531 0.323099894 S(ph)RSPITTNHRPS(ph)PDPEQRPLR ddPTM_HeLa_A486_30min_R1 1 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 2 0 S(0.5)RS(0.5)PIT(0.037)T(0.031)NHRPS(0.932)PDPEQRPLR 115.66 2.92E-05 1164300000 254770 283680 208520 62154 285620 196780 247050 230210 218450 241490 TRUE FALSE FALSE 236911.9386 261200.1637 289264.5284 144697.6531 249794.8763 172503.2843 185235.477 177796.2084 237385.4219 181019.3322 1.308765952 1.44294071 1.59797589 0.799349171 1.379934802 0.952955037 1.02329113 0.982194588 1.311381602 1 17.46578425 -5.249830495 24.99976559 1.070237268 1.449198841 0.511653079 0.172621733 595.9161015 1283304.872 0.044820071 0.076796571 5.63E-06 5.249830495 0.378961574 S(ph)RSPITTNHRPSPDPEQRPLR ddPTM_HeLa_A485_30min_R1 2 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 1 0 S(0.499)RS(0.499)PIT(0.001)T(0.001)NHRPSPDPEQRPLR;S(0.498)RS(0.498)PIT(0.001)T(0.002)NHRPSPDPEQRPLR ; 94.72 0.00077606 1861660000 284054 434690 438330 304746 508760 393699 492670 494790 408611 443069 TRUE FALSE FALSE 347240.8323 485523.2142 600486.5074 321393.5023 458106.068 414312.4709 387407.0298 373441.9767 490615.4797 332620.0524 1.0439564 1.459693157 1.805322629 0.966248126 1.377265335 1.245602807 1.164713393 1.122728392 1.475002713 1 18.34351562 -5.28261871 24.9944536 1.206874703 1.438661104 0.196469387 0.224200108 1321.483102 1559524.298 0.062388929 0.092640998 5.22E-06 5.28261871 0.231786402 S(ph)RSPLAR ddPTM_HeLa_A485_30min_R1 2 SRSPLAR 7 1 Q8N3Y1 Q8N3Y1 FBXW8 F-box/WD repeat-containing protein 8 1 0 S(0.852)RS(0.148)PLAR;S(0.604)RS(0.396)PLAR ; 94.85 0.0027755 495341000 86900.9 111266 99738.8 87556 121522 118286 137735 147002 115893 123397 TRUE FALSE FALSE 106231.7054 124277.5908 136636.3326 92338.96258 109422.843 124479.2721 108306.7921 110949.529 139151.6621 92636.39885 1.146759877 1.341563277 1.47497457 0.996789207 1.181207866 1.343740404 1.169160216 1.197688278 1.502127282 1 16.49929155 -11.0137039 2.449052599 0.721432659 1.257857551 0.21906469 0.148004098 8704797.066 3513926.414 13644661.23 0.037708338 9.69E-12 11.0137039 0.536424892 S(ph)RSPLAR ddPTM_HeLa_A486_30min_R1 1 SRSPLAR 7 1 Q8N3Y1 Q8N3Y1 FBXW8 F-box/WD repeat-containing protein 8 1 0 S(0.634)RS(0.366)PLAR 83.647 0.0046832 316340000 10161 12441 14074 5950.4 14545 9863.1 16023 12399 4771.2 16311 TRUE FALSE FALSE 9448.766371 11455.12985 19523.82971 13852.83192 12720.63047 8646.291003 12013.87593 9576.018368 5184.771458 12226.61943 0.772802852 0.936900826 1.596829755 1.133005897 1.040404549 0.70716939 0.982599973 0.783210635 0.42405601 1 13.57773794 -6.12236361 3.872348723 0.778890424 1.128819679 0.293494716 0.246074807 0.320611309 8.412859271 0.087794211 0.088604533 7.54E-07 6.12236361 0.349929256 S(ph)RSPLELEPEAK ddPTM_HeLa_A485_30min_R1 1 SRSPLELEPEAK 12 1 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 S(0.5)RS(0.5)PLELEPEAK 101.01 0.00047099 4106300000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)RSPLELEPEAK ddPTM_HeLa_A486_30min_R1 4 SRSPLELEPEAK 12 1 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 S(0.5)RS(0.5)PLELEPEAK;S(0.5)RS(0.5)PLELEPEAK;S(0.5)RS(0.5)PLELEPEAK;S(0.5)RS(0.5)PLELEPEAK ;;; 101.08 0.0004674 26210550000 29610900 34164700 22032870 11242190 32511320 31581200 37992020 37541070 29010670 36852800 TRUE FALSE FALSE 27535328.82 31457364.75 30564587.32 26172386.47 28433447.09 27685032.64 28486014.76 28993787.88 31525338.23 27624619.01 0.996767731 1.138743841 1.10642566 0.947429771 1.029279248 1.002186949 1.031182177 1.049563358 1.141204453 1 24.71945123 -10.19209998 13.7013346 1 1.048034135 0.057044332 0.059839827 0 0 0.05981446 0.014507137 6.43E-11 10.19209998 0.048034135 S(ph)RSPLGFYVHLK ddPTM_HeLa_A485_30min_R1 2 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(0.5)RS(0.5)PLGFYVHLK;S(0.64)RS(0.36)PLGFYVHLK ; 131.56 1.55E-05 1130710000 642200 711500 615540 690750 909170 791330 1000120 1092790 615890 1052550 TRUE FALSE FALSE 785055.1744 794703.7358 843253.8608 728483.9234 818649.8425 832762.8152 786436.1918 824781.5391 739493.4737 790168.6557 0.99352862 1.005739382 1.067182119 0.921934726 1.03604444 1.053905149 0.99527637 1.043804425 0.935867891 1 19.59180109 -7.759439337 24.99999095 0.967933952 1.014410928 0.169200671 0.041427399 89.07529745 1113534.842 0.030431238 0.010157704 1.74E-08 7.759439337 0.046476977 S(ph)RSPLGFYVHLK ddPTM_HeLa_A486_30min_R1 2 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(0.535)RS(0.465)PLGFYVHLK;S(0.657)RS(0.343)PLGFYVHLK ; 122.75 3.19E-05 922760000 718830 669690 453890 256040 754610 717910 771850 801100 593770 811440 TRUE FALSE FALSE 668443.729 616621.3254 629648.3636 596074.0595 659959.7773 629341.5634 578724.9662 618707.0179 645238.4617 608250.1424 1.098961895 1.013762731 1.035179969 0.979981784 1.085013765 1.034675571 0.951458826 1.017191735 1.060811033 1 19.21430523 -6.553992647 24.99914309 1.006550776 1.039365765 0.147145106 0.039962949 429.9537674 345452.153 0.015309004 0.011858331 2.79E-07 6.553992647 0.032814989 S(ph)RSPLHPMSEIPR ddPTM_HeLa_A485_30min_R1 1 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.642)RS(0.358)PLHPMSEIPR 88.951 0.00082949 488790000 150660 225290 193010 160620 259830 185070 248360 266880 202500 240470 TRUE FALSE FALSE 184173.7972 251635.7057 264412.4308 169394.2639 233960.4129 194759.979 195295.8571 201427.2615 243139.8926 180525.2545 1.020210705 1.393908605 1.464683883 0.938341089 1.295998244 1.078851707 1.081820145 1.115784393 1.346846973 1 17.46184115 -5.255091637 24.99080572 1.131057589 1.3030318 0.195346006 0.157431594 831.7096046 3274399.671 0.041964091 0.070362992 5.56E-06 5.255091637 0.171974211 S(ph)RSPLHPMSEIPR ddPTM_HeLa_A486_30min_R1 1 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.5)RS(0.5)PLHPMSEIPR 84.829 0.0012481 435780000 332820 362690 308420 86702 384960 321330 370380 378780 314750 337140 TRUE FALSE FALSE 309491.0367 333949.1235 427848.4838 201846.6377 336674.7272 281687.5716 277707.0065 292540.0627 342032.7834 252717.9496 1.224649999 1.321430172 1.69298811 0.79870321 1.332215332 1.11463223 1.098881211 1.157575325 1.353417056 1 17.94716861 -5.255085655 24.99974702 1.136232384 1.403863467 0.339162003 0.185172022 633.0645831 2490888.333 0.049167892 0.082542006 5.56E-06 5.255085655 0.267631084 S(ph)RSPLHPMSEIPRR ddPTM_HeLa_A486_30min_R1 1 SRSPLHPMSEIPRR 14 2 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.5)RS(0.5)PLHPMSEIPRR 65.085 0.0078153 479910000 59881 49019 44922 15855 74959 43883 66112 75180 39180 61084 TRUE FALSE FALSE 55683.65113 45134.55592 62317.00145 36911.24127 65556.94326 38469.16163 49570.07834 58063.15517 42576.15395 45788.16881 1.216114393 0.985725289 1.360984793 0.80613054 1.431744159 0.840155058 1.08259578 1.268082054 0.92985055 1 15.48268725 S(ph)RSPLLVTVVESDPRPQGQPR ddPTM_HeLa_A485_30min_R1 1 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR 58.418 0.01032 202520000 49206 77297 70135 41730 92959 72985 78307 87220 65327 62598 TRUE FALSE FALSE 60151.70494 86336.21176 96080.85506 44009.60423 83703.67556 76806.38174 61576.06974 65829.15824 78437.52969 46993.47063 1.280001331 1.837195904 2.044557547 0.93650466 1.781176713 1.634405391 1.310311175 1.400814993 1.669115488 1 15.5201727 -11.97628197 0.220694062 1.62E-16 1.635157906 0.217007269 0.306092119 86.05265376 1.91290414 41.11616687 0.618160641 1.06E-12 11.97628197 1.635157906 S(ph)RSPLLVTVVESDPRPQGQPR ddPTM_HeLa_A486_30min_R1 4 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR;S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR;S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR;S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR ;;; 117.94 1.55E-05 3677350000 537987 564683 411951 180436 590224 570114 554183 602281 513120 544679 TRUE FALSE FALSE 500276.8895 519935.4625 571469.4596 420064.1267 516192.6023 499779.1312 415520.5518 465154.764 557597.6547 408287.8331 1.225304427 1.273453237 1.399673008 1.028843117 1.264286027 1.224085291 1.017714754 1.139281473 1.365697455 1 18.63922705 -5.255104669 24.99062311 1.156878829 1.296874516 0.257340232 0.116866177 767.044158 3026005.837 0.031620708 0.053039856 5.56E-06 5.255104669 0.139995687 S(ph)RSPNRFDAHDPR ddPTM_HeLa_A485_30min_R1 6 SRSPNRFDAHDPR 13 2 Q96T58;A0A669KB49;F6WRY4 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.512)RS(0.488)PNRFDAHDPR;S(0.589)RS(0.411)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR;S(0.571)RS(0.429)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR ;;;;; 69.602 0.0050217 9857080000 2228720 3329320 3144250 2184640 3985090 3191410 3914470 4494360 2857270 3222960 TRUE FALSE FALSE 2724491.075 3718655.013 4307438.918 2303981.351 3588320.447 3358507.293 3078111.506 3392111.163 3430697.881 2419535.386 1.126038946 1.536929377 1.780275231 0.95224123 1.483061776 1.388079427 1.27219115 1.40196799 1.417915977 1 21.20629861 -10.88044488 2.248370683 0.795890745 1.379142644 0.215011326 0.213647458 8589029.628 4204071.112 9313870.835 0.054320698 1.32E-11 10.88044488 0.583251899 S(ph)RSPNRFDAHDPR ddPTM_HeLa_A486_30min_R1 4 SRSPNRFDAHDPR 13 2 Q96T58;A0A669KB49;F6WRY4 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.5)RS(0.5)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR;S(0.5)RS(0.5)PNRFDAHDPR ;;; 78.763 0.0026914 2049800000 1064970 1012750 917170 335745 1271450 922060 1131610 1162480 861300 1075100 TRUE FALSE FALSE 990321.1025 932496.0016 1272322.787 781631.3276 1111972.885 808305.612 848469.2091 897808.6808 935958.1775 805887.9623 1.228857048 1.157103773 1.57878371 0.969900736 1.379810764 1.002999982 1.052837676 1.114061411 1.161399874 1 19.62021976 -6.271433015 24.98732859 1.072549743 1.258286464 0.293571428 0.152270739 955.9045924 2390064.319 0.051381942 0.045837196 5.35E-07 6.271433015 0.18573672 S(ph)RSPPPVS(ph)K ddPTM_HeLa_A485_30min_R1 7 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.992)RS(0.188)PPPVS(0.82)K;S(0.998)RS(0.022)PPPVS(0.98)K;S(0.997)RS(0.45)PPPVS(0.553)K;S(1)RS(0.214)PPPVS(0.786)K;S(0.999)RS(0.4)PPPVS(0.601)K;S(1)RS(0.003)PPPVS(0.998)K;S(0.982)RS(0.021)PPPVS(0.996)K ;;;;;; 124.51 0.0012545 78564100000 20984650 18550210 12081100 30097750 20037720 19749560 30668790 26419990 15931380 37273420 TRUE FALSE FALSE 25652613 20719495.69 16550401.63 31741913.87 18042694.24 20783616.42 24116152.48 19940446.03 19128661.83 27981842.36 0.916759256 0.740462169 0.591469333 1.134375409 0.644800082 0.742753681 0.861850059 0.712620912 0.683609806 1 24.73798762 S(ph)RSPPPVS(ph)K ddPTM_HeLa_A486_30min_R1 3 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.979)RS(0.208)PPPVS(0.813)K;S(0.997)RS(0.023)PPPVS(0.98)K;S(0.999)RS(0.02)PPPVS(0.981)K ;; 124.51 0.0012545 21891900000 9927700 9060300 3751370 4221170 5764300 9374000 10848100 9345500 6804500 15068800 TRUE FALSE FALSE 9231819.497 8342328.831 5204000.929 9827097.086 5041287.744 8217531.188 8133790.64 7217733.661 7394319.539 11295474.4 0.817302503 0.738554977 0.46071557 0.870003042 0.446310404 0.727506513 0.720092876 0.638993406 0.654626736 1 23.42924153 -10.46415701 2.736351259 1.011199121 0.671308669 0.362398795 0.129286525 13829155.91 14702870.62 1182477.814 0.031681434 3.43E-11 10.46415701 -0.339890452 S(ph)RSPPPVSK ddPTM_HeLa_A485_30min_R1 5 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.74)RS(0.26)PPPVSK;S(0.5)RS(0.5)PPPVSK;S(0.5)RS(0.5)PPPVSK;S(0.5)RS(0.5)PPPVSK;S(0.5)RS(0.5)PPPVSK ;;;; 66.023 0.0044179 2497810000 2939930 3153420 2487874 3633190 3076860 3023910 3689580 3460140 2771970 6636590 TRUE FALSE FALSE 3593907.286 3522185.038 3408242.122 3831661.97 2770517.015 3182237.252 2901271.092 2611535.24 3328278.953 4982210.25 0.721347977 0.706952308 0.684082355 0.769068702 0.556081915 0.638719984 0.582326106 0.524172026 0.668032617 1 22.24835447 -8.050569442 23.36467071 1.000000001 0.646177823 0.675834908 0.072813708 5034.002464 2325862.804 0.076344808 0.019712145 8.90E-09 8.050569442 -0.353822178 S(ph)RSPPPVSK ddPTM_HeLa_A486_30min_R1 2 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.5)RS(0.5)PPPVSK;S(0.5)RS(0.5)PPPVSK ; 65.563 0.0099133 1433290000 1644560 1427570 876560 481080 1384720 1377320 1432900 1445100 1340130 1831540 TRUE FALSE FALSE 1529284.837 1314444.154 1215987.507 1119978.552 1211035.506 1207400.262 1074373.264 1116082.276 1456293.547 1372910.463 1.113899907 0.957414332 0.885700517 0.815769552 0.88209358 0.879445743 0.782551589 0.812931583 1.06073454 1 20.38880611 -4.328096387 2.072304508 0.875792368 1.160987246 0.403162285 0.081273122 0.546617615 2.907877429 0.021312638 0.277771915 4.70E-05 4.328096387 0.285194878 S(ph)RSPPPVSKR ddPTM_HeLa_A486_30min_R1 1 SRSPPPVSKR 10 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.5)RS(0.5)PPPVSKR 40.113 0.03414 73193000 68183 37738 32390 18051 55560 30060 47337 51567 33160 61964 TRUE FALSE FALSE 63403.7238 34747.50344 44932.27543 42023.64025 48591.14672 26351.50283 35492.78192 39826.3198 36034.3355 46447.81108 1.365052999 0.74809776 0.967371215 0.904749638 1.04614503 0.56733573 0.764143263 0.85744234 0.775802662 1 15.50332299 -4.254938677 24.80107983 0.843764064 1.365053262 0.570529644 0.134564371 499.6738001 1906268.278 0.033947946 0.313182356 5.56E-05 4.254938677 0.521289198 S(ph)RSPPTSELMMK ddPTM_HeLa_A485_30min_R1 2 SRSPPTSELMMK 12 1 F6VUX8;Q9HC77-2;Q9HC77 F6VUX8 CENPJ Centromere protein J 1 0 S(0.727)RS(0.269)PPT(0.003)S(0.001)ELMMK;S(0.809)RS(0.188)PPT(0.002)SELMMK ; 65.477 0.0087869 300020000 314440 395940 359890 314900 508680 402700 490780 523150 399740 439490 TRUE FALSE FALSE 384386.0932 442241.7388 493028.2873 332102.1896 458034.0331 423784.7493 385920.8437 394846.6422 479964.1514 329933.2312 1.165042066 1.340397683 1.49432746 1.006573931 1.388262805 1.284456094 1.169693766 1.196747114 1.454731158 1 18.33181457 -10.43828471 3.219956022 0.995722628 1.275916326 0.258716144 0.141039036 57030534.62 85028424.66 2282361.958 0.033467152 3.65E-11 10.43828471 0.280193698 S(ph)RSPQWR ddPTM_HeLa_A485_30min_R1 2 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.613)RS(0.387)PQWR;S(0.972)RS(0.028)PQWR ; 68.787 0.010754 1602590000 166970 200307 235905 168451 264346 194140 233549 196089 177925 235857 TRUE FALSE FALSE 204111.9005 223731.1612 323176.0763 177653.0516 238026.7841 204304.8702 183649.3482 147997.8653 213632.9155 177062.1905 1.152769543 1.263573892 1.825212234 1.003337026 1.344311755 1.153859385 1.037202509 0.835852447 1.206541695 1 17.43389665 -6.348975749 1.279257173 0.999764617 1.352257203 0.297877717 0.214417442 0.546150943 1.818289936 0.10913288 0.091191472 4.48E-07 6.348975749 0.352492586 S(ph)RSPQWR ddPTM_HeLa_A486_30min_R1 1 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.603)RS(0.397)PQWR 54.608 0.022953 214940000 23029 27444 28744 9704.9 37546 29743 25729 29005 24177 28090 TRUE FALSE FALSE 21414.78602 25269.23749 39874.44659 22593.49766 32836.63058 26073.61106 19291.33207 22401.19467 26272.68183 21056.08116 1.017035689 1.200092139 1.893725916 1.07301532 1.559484423 1.238293625 0.916188151 1.063882424 1.247747937 1 14.36194933 -6.536708078 11.40641701 1.064284892 1.359740234 0.236203253 0.246963195 0.670204263 539.5266676 0.093421598 0.0730982 2.91E-07 6.536708078 0.295455342 S(ph)RSPS(ph)SPELNNK ddPTM_HeLa_A485_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.949)RS(0.187)PS(0.505)S(0.36)PELNNK 121.13 0.00041738 555820000 811800 742980 458500 1231400 987590 917210 1355300 1273400 669620 1559100 TRUE FALSE FALSE 992382.1093 829865.0479 628118.2298 1298668.264 889262.072 965233.6973 1065729.083 961096.6534 804006.5919 1170445.063 0.847867312 0.709016659 0.536649049 1.109550807 0.759764042 0.824672364 0.910533195 0.821137774 0.686923818 1 20.15862579 S(ph)RSPS(ph)SPELNNK ddPTM_HeLa_A486_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.997)RS(0.065)PS(0.874)S(0.064)PELNNK 172.26 4.54E-10 661900000 756930 724430 291320 367770 628600 828980 1037300 935430 503200 1074000 TRUE FALSE FALSE 703873.1158 667023.5285 404126.9058 856187.1461 549755.1265 726708.8761 777756.5686 722453.0093 546817.7812 805063.4094 0.874307673 0.828535393 0.50198146 1.063502745 0.682871834 0.902672842 0.96608113 0.897386468 0.679223245 1 19.61874289 -5.276838691 24.99609217 0.876009442 0.744300855 0.174572491 0.147834747 1528.94534 2481773.827 0.040842377 0.060826975 5.29E-06 5.276838691 -0.131708588 S(ph)RSPSS(ph)PELNNK ddPTM_HeLa_A485_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RS(0.087)PS(0.178)S(0.736)PELNNK 122.96 0.00037433 0 177550 155740 104210 286970 224920 194180 291740 286570 144850 366350 TRUE FALSE FALSE 217045.385 173952.4382 142761.6155 302646.4445 202526.1751 204346.9645 229407.3657 216288.2582 173920.0664 275025.6872 0.789182229 0.632495241 0.519084661 1.100429736 0.736390034 0.743010468 0.834130688 0.786429298 0.632377536 1 18.06920685 -11.54465244 2.055124947 4.22484378 0.755075296 0.204586357 0.146264397 4603615.805 276659.2749 69230393.2 0.03803516 2.85E-12 11.54465244 -3.469768484 S(ph)RSPSS(ph)PELNNK ddPTM_HeLa_A486_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RS(0.001)PS(0.092)S(0.908)PELNNK 176.15 1.70E-10 652200000 1023000 1009400 461540 516680 903550 1141700 1450100 1288700 724420 1510700 TRUE FALSE FALSE 951292.9828 929411.4678 640260.6485 1202857.152 790218.3337 1000848.662 1087269.642 995291.1421 787213.3089 1132410.887 0.840059906 0.820736959 0.565396055 1.062209102 0.697819442 0.883821123 0.960137045 0.878913435 0.69516579 1 20.11096609 -5.260154638 24.99997542 0.873120364 0.749931588 0.193753662 0.13006195 216.1081478 4205232.092 0.035019722 0.056565509 5.49E-06 5.260154638 -0.123188775 S(ph)RSPSSPELNNK ddPTM_HeLa_A485_30min_R1 2 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.487)RS(0.487)PS(0.023)S(0.002)PELNNK;S(0.488)RS(0.488)PS(0.024)S(0.001)PELNNK ; 98.633 0.0005977 521420000 233307 243850 227790 260850 288090 291400 361340 387390 233470 394670 TRUE FALSE FALSE 285205.3373 272366.1363 312059.0001 275099.575 259406.7481 306657.2534 284136.7571 292381.9951 280325.2875 296286.0324 0.962601358 0.919267554 1.05323561 0.928493229 0.875528104 1.035004084 0.958994776 0.986823418 0.94613062 1 18.17663109 -6.293987614 24.99976066 0.982917286 0.951020707 0.131592544 0.047689144 1727.849738 1327127.281 0.01709533 0.01507836 5.08E-07 6.293987614 -0.031896579 S(ph)RSPTIK ddPTM_HeLa_A485_30min_R1 2 SRSPTIK 7 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.638)RS(0.36)PT(0.001)IK;S(0.763)RS(0.236)PT(0.001)IK ; 73.985 0.0086304 470540000 317460 310260 190279 385290 244604 347960 399020 495460 276550 498920 TRUE FALSE FALSE 388077.8818 346542.2081 260671.1203 406337.4171 220250.3669 366178.6476 313766.1173 373947.6581 332051.0483 374548.4259 1.036122047 0.925226711 0.695961062 1.084872847 0.588042431 0.977653682 0.837718425 0.998396021 0.886537028 1 18.51479273 -7.258995911 24.99990013 0.956849894 0.873405705 0.065321673 0.144038993 645.99271 6609446.421 0.067982114 0.036877684 5.51E-08 7.258995911 -0.083444188 S(ph)RSPTIK ddPTM_HeLa_A486_30min_R1 1 SRSPTIK 7 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.554)RS(0.438)PT(0.008)IK 53.751 0.023731 81185000 132890 82520 87559 57348 85950 168210 119640 96380 124970 152400 TRUE FALSE FALSE 123575.0972 75980.81467 121464.1897 133509.0422 75169.34955 147457.9604 89704.80658 74436.37796 135802.5002 114238.048 1.08173327 0.665109532 1.063255122 1.168691557 0.65800625 1.290795518 0.785244567 0.651590072 1.188767688 1 16.80168371 -8.956306465 11.22896595 1.00001671 0.939478628 0.002152181 0.231265482 0 0 0.213286197 0.051729501 1.11E-09 8.956306465 -0.060538082 S(ph)RSPVDLR ddPTM_HeLa_A485_30min_R1 3 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.835)RS(0.165)PVDLR;S(0.5)RS(0.5)PVDLR;S(0.5)RS(0.5)PVDLR ;; 90.653 0.0011699 1481410000 702980 886120 879660 738730 1030090 914350 993900 1068650 747920 1106440 TRUE FALSE FALSE 859355.4757 989744.0258 1205082.84 779084.9493 927530.6227 962223.9521 781545.1456 806561.9119 898020.6837 830624.8705 1.034589146 1.191565604 1.450814781 0.937950424 1.116666086 1.158433833 0.940912286 0.971030294 1.081138689 1 19.66383754 -5.929934012 1.03068115 1.009974839 1.196905053 0.217172954 0.130220593 0.792519332 1.81057184 0.064794895 0.08246262 1.18E-06 5.929934012 0.186930213 S(ph)RSPVDLR ddPTM_HeLa_A486_30min_R1 4 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.727)RS(0.273)PVDLR;S(0.705)RS(0.295)PVDLR;S(0.632)RS(0.368)PVDLR;S(0.5)RS(0.5)PVDLR ;;; 90.653 0.0018666 1763420000 1602700 1629330 1371620 523164 1974640 1498210 1608220 1618750 1400410 1780740 TRUE FALSE FALSE 1490359.006 1500215.957 1902747.997 1217952.231 1726962.238 1313376.083 1205826.346 1250195.962 1521798.666 1334831.113 1.116515034 1.123899452 1.425459729 0.912439199 1.293768344 0.983926783 0.903354989 0.936594862 1.140068321 1 20.34822579 -6.291372835 22.87710151 0.983236425 1.171002406 0.306662872 0.136123739 300.7791896 229873.4653 0.046488531 0.04100864 5.11E-07 6.291372835 0.187765982 S(ph)RSRDS(ph)GDENEPIQER ddPTM_HeLa_A485_30min_R1 4 SRSRDSGDENEPIQER 16 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 2 0 S(0.867)RS(0.137)RDS(0.996)GDENEPIQER;S(0.973)RS(0.027)RDS(1)GDENEPIQER;S(0.997)RS(0.003)RDS(0.999)GDENEPIQER;S(0.948)RS(0.057)RDS(0.995)GDENEPIQER ;;; 136.77 2.44E-05 6983000000 1646530 2015560 1794980 1836300 2669550 2014000 2558280 2907890 2031610 3086000 TRUE FALSE FALSE 2012794.918 2251262.209 2459017.797 1936612.419 2403760.229 2119449.926 2011682.579 2194725.418 2439335.492 2316716.994 0.868813465 0.97174675 1.061423473 0.835929647 1.037571803 0.914850597 0.868333329 0.94734291 1.052927698 1 21.14365039 -7.71516146 8.382960102 1.026254198 0.940103312 0.204367363 0.069562586 0.372625764 61.20763886 0.047089065 0.017419825 1.93E-08 7.71516146 -0.086150885 S(ph)RSRDS(ph)GDENEPIQER ddPTM_HeLa_A486_30min_R1 4 SRSRDSGDENEPIQER 16 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 2 0 S(0.986)RS(0.014)RDS(1)GDENEPIQER;S(0.666)RS(0.334)RDS(1)GDENEPIQER;S(0.818)RS(0.184)RDS(0.998)GDENEPIQER;S(0.985)RS(0.015)RDS(1)GDENEPIQER ;;; 169.33 1.50E-11 5598400000 2574390 2829200 2650950 1351270 3818490 3167880 3485270 3595560 2506480 3034780 TRUE FALSE FALSE 2393938.555 2605003.888 3677468.835 3145824.849 3339539.378 2777059.174 2613218.583 2776929.479 2723743.705 2274851.335 1.052349452 1.145131485 1.616575456 1.38287052 1.468025328 1.220765125 1.148742576 1.220708112 1.197328222 1 21.11734084 -6.485331572 8.379759331 1.163405654 1.341622187 0.244067762 0.157137294 0.539463163 112.7253709 0.059841505 0.051964622 3.27E-07 6.485331572 0.178216532 S(ph)RSRS(ph)Y(ph)ER ddPTM_HeLa_A486_30min_R1 1 SRSRSYER 8 2 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 3 0 S(0.999)RS(0.126)RS(0.95)Y(0.924)ER 62.732 0.036626 858720000 395550 383920 476960 499670 684570 787060 773280 791160 543740 673840 TRUE FALSE FALSE 367823.9876 353496.781 661651.6854 1163257.012 598704.8472 689960.5394 579797.1651 611030.1389 590871.821 505106.078 0.728211367 0.699846619 1.3099262 2.302995475 1.185305173 1.365971564 1.147872081 1.209706566 1.169797487 1 18.94622688 -4.777976041 6.493422728 1.369264563 0.710123878 0.345976173 0.340380279 0.153323956 25.43460852 0.092874334 0.211082189 1.67E-05 4.777976041 -0.659140685 S(ph)RSRT(ph)PT(ph)TR ddPTM_HeLa_A486_30min_R1 1 SRSRTPTTR 9 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.763)RS(0.237)RT(0.691)PT(0.691)T(0.617)R 66.498 0.01055 1024700000 1157900 868670 1201700 22960 417760 705720 230860 256000 1433300 129820 TRUE FALSE FALSE 1076737.189 799833.4256 1667030.423 53452.04033 365360.6453 618655.4416 173096.3862 197714.3884 1557539.598 97312.22701 11.06476773 8.21924901 17.13073962 0.549283908 3.754519412 6.357427639 1.778773249 2.031752787 16.0055899 1 16.57033347 -5.268513991 24.99438683 4.473104804 11.74635187 0.357400094 4.686580661 610.6409184 2157375.568 1.286560318 1.955196136 5.39E-06 5.268513991 7.273247061 S(ph)RSRT(ph)S(ph)PAPWK ddPTM_HeLa_A486_30min_R1 1 SRSRTSPAPWK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.999)RS(0.403)RT(0.847)S(0.751)PAPWK 87.932 0.0036543 433870000 773760 733020 407200 456730 721120 975990 1131400 1051400 688520 1259000 TRUE FALSE FALSE 719523.4197 674932.8256 564878.7452 1063290.522 630670.4054 855582.2769 848311.7533 812019.1719 748201.468 943738.2053 0.76241845 0.715169548 0.598554495 1.126679535 0.668268384 0.906588577 0.898884615 0.860428419 0.792806166 1 19.84802718 -1 0.136454282 0.993249961 0.018520774 0.198428586 0.134958926 130.2712833 1.193319807 0.616794412 24.64597063 0.1 1 -0.974729187 S(ph)RSRT(ph)S(ph)PVSR ddPTM_HeLa_A485_30min_R1 1 SRSRTSPVSR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.752)RS(0.646)RT(0.828)S(0.773)PVS(0.001)R 68.262 0.017883 1048400000 124840 151070 141200 180340 221930 157380 210470 224750 148260 246910 TRUE FALSE FALSE 152610.2273 168736.3224 193435.7558 190191.5176 199833.87 165620.1734 165501.3651 169629.7101 178014.4221 185359.881 0.823318544 0.910317386 1.043568623 1.026066247 1.078085877 0.893506041 0.892865081 0.915137133 0.960371905 1 17.4999695 -4.457390337 4.000040133 0.973065866 0.831379264 0.382712073 0.060175901 0.275281229 8.219762457 0.017336724 0.078000341 3.49E-05 4.457390337 -0.141686602 S(ph)RSS(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A485_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.623)RS(0.382)S(0.991)S(0.455)VGS(0.368)S(0.096)S(0.064)S(0.022)YPISPAVSR 185.16 9.51E-22 0 121880 177370 152170 169290 207770 180540 209480 216780 161910 227550 TRUE FALSE FALSE 148991.7855 198111.8786 208464.0153 178537.884 187083.6893 189992.7952 164722.8867 163614.3651 194403.8519 170825.9727 0.872184616 1.159729258 1.220329742 1.04514484 1.095171222 1.112200868 0.964273079 0.957783892 1.1380228 1 17.38216782 -6.749145844 24.99658636 1.011501929 1.092484403 0.105415338 0.096587431 461.261553 937888.859 0.037152054 0.028567079 1.78E-07 6.749145844 0.080982474 S(ph)RSS(ph)SPVT(ph)ELASR ddPTM_HeLa_A486_30min_R1 1 SRSSSPVTELASR 13 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.368)S(0.527)S(0.155)PVT(0.949)ELAS(0.001)R 169.43 2.93E-11 2481500000 378110 399580 239670 185020 335000 415690 414930 389820 373130 593130 TRUE FALSE FALSE 351606.4416 367915.8256 332476.6426 430735.9104 292981.1762 364406.3942 311110.1253 301066.4957 405473.2088 444606.3874 0.790826339 0.827509087 0.747799969 0.968802794 0.658967538 0.819615742 0.699742816 0.67715288 0.911982419 1 18.76216915 -7.969304828 6.283242904 0.999761439 0.776882028 0.440693523 0.084931422 0.133241016 15.34809769 0.080566052 0.020896807 1.07E-08 7.969304828 -0.222879411 S(ph)RST(ph)PVRDR ddPTM_HeLa_A485_30min_R1 2 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.612)RS(0.565)T(0.824)PVRDR;S(0.981)RS(0.382)T(0.637)PVRDR ; 75.483 0.0092283 12044790000 2437280 3751070 2695040 2884570 3222460 3477600 4200210 5923260 3306060 3771290 TRUE FALSE FALSE 2979444.527 4189725.007 3692047.446 3042146.755 2901620.568 3659681.759 3302800.821 4470571.198 3969555.917 2831176.808 1.052369643 1.479852828 1.30406813 1.074516698 1.024881441 1.292636245 1.166582324 1.579050515 1.402086901 1 21.43297042 S(ph)RST(ph)PVRDR ddPTM_HeLa_A486_30min_R1 1 SRSTPVRDR 9 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.999)RS(0.157)T(0.844)PVRDR 87.624 0.0032443 5673300000 1841900 1067700 1587600 881020 1593000 2202500 1933000 1774500 1677600 2276100 TRUE FALSE FALSE 1712792.322 983091.5635 2202361.237 2051059.084 1393191.086 1930777.943 1449342.955 1370485.087 1823015.719 1706149.745 1.003893314 0.576204736 1.290837011 1.202156546 0.816570228 1.131657962 0.849481682 0.803261901 1.068496903 1 20.70231284 S(ph)RST(ph)T(ph)PAPK ddPTM_HeLa_A485_30min_R1 1 SRSTTPAPK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.809)RS(0.607)T(0.741)T(0.843)PAPK 55.196 0.026101 1022500000 1023400 930270 421930 2213400 845090 1090700 1622000 2003600 874750 2832500 TRUE FALSE FALSE 1251051.799 1039056.984 578019.465 2334312.437 760949.8723 1147807.365 1275446.449 1512213.958 1050304.301 2126409.878 0.588339911 0.488643791 0.271828809 1.09777163 0.35785663 0.539786509 0.599812135 0.711158264 0.493933137 1 21.01998828 -14 0.275782596 4.026499667 0.545519886 0.267639106 0.211648042 300.0225898 2.896798485 518.5610762 0.245137658 1.00E-14 14 -3.480979781 S(ph)RST(ph)T(ph)PAPK ddPTM_HeLa_A486_30min_R1 1 SRSTTPAPK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(0.408)T(0.82)T(0.772)PAPK 98.105 0.0028412 1426900000 880740 488430 321890 545720 447620 1124000 896520 694950 766850 1676200 TRUE FALSE FALSE 819004.6741 449725.028 446534.4285 1270463.739 391475.3257 985332.308 672201.2136 536725.0557 833321.1754 1256468.61 0.651830589 0.357927786 0.355388447 1.011138463 0.311567931 0.78420766 0.534992445 0.42716949 0.663224826 1 20.2609432 -13.99999993 0.38387574 7.352384844 0.551201207 0.281979568 0.208324091 812.6060554 6.025363128 4302.058024 0.135289171 1.00E-14 13.99999993 -6.801183638 S(ph)RST(ph)TPAPK ddPTM_HeLa_A486_30min_R1 2 SRSTTPAPK 9 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.88)RS(0.432)T(0.511)T(0.177)PAPK;S(0.771)RS(0.455)T(0.696)T(0.078)PAPK ; 67.997 0.014111 601030000 1122040 863000 475180 644240 849300 1173580 1346360 1240750 776350 1931130 TRUE FALSE FALSE 1043390.79 794612.737 659182.4218 1499823.278 742772.8746 1028795.632 1009486.488 958258.3104 843644.6431 1447562.478 0.720791541 0.548931565 0.455374073 1.036102621 0.513119734 0.710708966 0.697369891 0.661980622 0.582803613 1 20.46519419 -10.94480581 2.626409943 1.244229241 0.658974569 0.312464147 0.151935797 14623109.81 8200602.989 21846266.15 0.036493872 1.14E-11 10.94480581 -0.585254672 S(ph)RSTNT(ph)AVSR ddPTM_HeLa_A485_30min_R1 1 SRSTNTAVSR 10 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 2 0 S(0.997)RS(0.153)T(0.248)NT(0.601)AVSR 111.59 0.011185 2574100000 1363700 1302600 1038800 1623100 1748600 1384900 1936900 1874500 1192000 2363400 TRUE FALSE FALSE 1667050.36 1454927.739 1423095.348 1711765.843 1574503.244 1457411.223 1523065.492 1414775.936 1431223.466 1774247.875 0.939581433 0.82002507 0.802083727 0.964783933 0.88742011 0.821424809 0.85842881 0.797394747 0.80666489 1 20.75877615 -6.244682629 23.17071656 0.844222705 0.879365311 0.016878348 0.070051753 1081.701237 1495741.718 0.02280117 0.022723287 5.69E-07 6.244682629 0.035142606 S(ph)RSTTELDDYSTNKNGNNK ddPTM_HeLa_A486_30min_R1 1 SRSTTELDDYSTNKNGNNK 19 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.453)RS(0.273)T(0.273)TELDDYSTNKNGNNK 196.81 1.75E-20 646950000 480690 305910 169560 171220 399620 317010 520160 520330 228540 669160 TRUE FALSE FALSE 446996.1133 281668.5775 235218.173 398608.813 349495.9333 277900.5293 390010.4663 401862.2177 248350.0312 501597.9805 0.891144165 0.561542487 0.46893764 0.794677866 0.696765033 0.554030399 0.777535958 0.801163947 0.495117686 1 18.93617201 -11.03446722 2.424642001 1.400111822 0.669923495 0.338429762 0.137897517 11100514.93 4244314.921 24663020.29 0.033857763 9.24E-12 11.03446722 -0.730188327 S(ph)RSVS(ph)PCS(ph)NVESR ddPTM_HeLa_A485_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.982)RS(0.025)VS(0.999)PCS(0.994)NVES(0.001)R 142.76 1.04E-06 554330000 355870 460790 476120 577110 536580 473740 583150 666740 439720 726850 TRUE FALSE FALSE 435032.0538 514675.3822 652256.601 608636.058 483156.2112 498544.2939 458555.2386 503220.9696 527967.7706 545659.6717 0.797258944 0.943216823 1.195354238 1.115413305 0.885453399 0.913654279 0.840368571 0.922224961 0.967577041 1 19.0576419 -5.786646518 24.99487691 0.913204107 1.020878704 0.147000596 0.105859501 411.0428505 407579.4563 0.035485678 0.040252354 1.63E-06 5.786646518 0.107674597 S(ph)RSVS(ph)PCS(ph)NVESR ddPTM_HeLa_A486_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.963)RS(0.062)VS(0.981)PCS(0.988)NVES(0.006)R 93.117 0.013151 996580000 1755900 1611400 981530 503960 1332600 1440800 1404700 1464100 1348800 1405100 TRUE FALSE FALSE 1632820.477 1483706.795 1361604.702 1173244.349 1165452.882 1263048.745 1053229.203 1130756.391 1465715.07 1053253.814 1.550263056 1.408688746 1.292760286 1.113923665 1.106526144 1.19918744 0.999976633 1.073583951 1.391606705 1 20.00642171 -4.770792005 1.460568309 1.12377072 1.561587997 0.644100181 0.107022448 0.332370263 1.186481256 0.032000352 0.163071172 1.70E-05 4.770792005 0.437817277 S(ph)RSWEDS(ph)PER ddPTM_HeLa_A486_30min_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 S(0.5)RS(0.5)WEDS(1)PER 159.6 2.99E-06 4362300000 2661900 3049300 2500100 1055300 3434900 2831300 3395600 3341200 2504200 3170700 TRUE FALSE FALSE 2475314.556 2807662.363 3468205.675 2456791.732 3004062.813 2482002.993 2545984.965 2580481.698 2721266.072 2376736.082 1.041476407 1.18131011 1.459230455 1.03368302 1.263944632 1.044290534 1.071210634 1.085724964 1.144959296 1 21.18055028 -6.270752187 24.83710979 1.074718239 1.200730971 0.226615249 0.116635363 989.9877553 2640272.629 0.040777555 0.036421219 5.36E-07 6.270752187 0.126012732 S(ph)RSWTSPK ddPTM_HeLa_A486_30min_R1 1 SRSWTSPK 8 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.614)RS(0.386)WTSPK 54.259 0.022415 180840000 92437 76340 67003 41039 104260 93974 100490 106530 67393 114480 TRUE FALSE FALSE 85957.64365 70290.54037 92948.356 95540.866 91182.73861 82380.44334 75346.33913 82275.44453 73234.6795 85813.46286 1.001680165 0.819108541 1.083144217 1.11335521 1.062569154 0.959994395 0.87802469 0.958770824 0.853417134 1 16.38891638 -6.50846724 8.40700816 0.919006712 1.013970801 0.219756666 0.083228643 0.310137403 145.5977251 0.032547659 0.027215622 3.10E-07 6.50846724 0.09496409 S(ph)RSY(ph)S(ph)PAHNR ddPTM_HeLa_A486_30min_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 S(0.992)RS(0.211)Y(0.833)S(0.964)PAHNR 93.243 0.0027093 1179100000 891400 910300 935540 453730 1112000 947440 975020 1085600 971310 1046700 TRUE FALSE FALSE 828917.4632 838164.5127 1297806.143 1056306.37 972522.591 830554.4857 731059.6833 838432.5785 1055503.933 784599.5071 1.056484813 1.068270506 1.654100125 1.346300069 1.23951466 1.058571256 0.931761589 1.068612166 1.345277334 1 19.5815969 -6.159109702 4.156547552 1.07603334 1.292257625 0.214083234 0.184281458 0.385225985 11.58739095 0.067081442 0.066975377 6.93E-07 6.159109702 0.216224286 S(ph)RSY(ph)T(ph)PEYR ddPTM_HeLa_A485_30min_R1 1 SRSYTPEYR 9 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 3 0 S(0.995)RS(0.406)Y(0.622)T(0.975)PEY(0.003)R 102.26 0.0047997 636700000 438970 464600 368830 741200 687450 455700 652540 620500 425220 864480 TRUE FALSE FALSE 536617.3621 518930.9285 505275.5653 781689.8792 619005.0642 479559.7474 513119.4982 468321.4021 510557.7537 648981.0456 0.826861379 0.799608759 0.778567523 1.204487996 0.953810698 0.73894261 0.79065406 0.721625701 0.786706726 1 19.30781682 -6.258207731 24.64644553 0.78912919 0.915148521 0.127802257 0.132876121 456.6929305 3483013.22 0.047189242 0.045313125 5.52E-07 6.258207731 0.126019331 S(ph)RSYS(ph)PAHNR ddPTM_HeLa_A486_30min_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.544)RS(0.463)Y(0.347)S(0.647)PAHNR 85.493 0.0045718 774560000 683950 810410 703050 207130 1019700 700910 809530 863080 707400 662680 TRUE FALSE FALSE 636008.6369 746190.1601 975289.7883 482209.1078 891799.7177 614438.8505 606977.0317 666575.5249 768718.0016 496740.6147 1.280363671 1.502172639 1.96337839 0.970746288 1.795302601 1.236941036 1.221919476 1.341898579 1.547523957 1 18.92213318 S(ph)RT(ph)KRWPFGK ddPTM_HeLa_A485_30min_R1 1 SRTKRWPFGK 10 3 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 2 0 S(1)RT(1)KRWPFGK 44.765 0.035986 97934000 264400 153640 198500 532710 431880 190550 378400 271530 279070 691660 TRUE FALSE FALSE 323214.8678 171606.8615 271933.4103 561810.5984 388880.5108 200526.9034 297551.7488 204936.8418 335076.7892 519241.8911 0.62247456 0.330495025 0.523712387 1.081982421 0.748939016 0.38619169 0.573050353 0.394684723 0.645319253 1 18.98604726 -10.50079248 1.942822407 1.044252948 0.587046601 0.263603681 0.205716464 234450.3362 160054.9784 54560.29948 0.059315335 3.16E-11 10.50079248 -0.457206347 S(ph)RT(ph)PLISR ddPTM_HeLa_A485_30min_R1 1 SRTPLISR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(1)PLIS(0.001)R 59.155 0.031181 903750000 40989 54483 40662 77321 72250 43700 75560 65852 43505 104050 TRUE FALSE FALSE 50106.86164 60854.31291 55704.56589 81544.85044 65056.53631 45988.06443 59415.98873 49701.69375 52236.05445 78112.2499 0.641472518 0.779062349 0.713134828 1.043944459 0.832859589 0.588743308 0.760648795 0.636285523 0.668730635 1 16.2532612 -6.179642197 24.99992869 0.709999447 0.809309234 0.048134701 0.142284081 236.6109247 72313.64039 0.046521391 0.04652139 6.61E-07 6.179642197 0.099309787 S(ph)RT(ph)PLLPR ddPTM_HeLa_A485_30min_R1 8 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR ;;;;;;; 75.088 0.011196 28401080000 305169 288160 229275 501940 409221 300436 457239 439087 241381 632646 TRUE FALSE FALSE 373052.7912 321857.8053 314093.3634 529359.7112 368477.5204 316166.3644 359546.1524 331400.2248 289823.9526 474938.9952 0.785475177 0.677682415 0.661334122 1.114584645 0.77584179 0.665698895 0.757036495 0.6977743 0.610234063 1 18.85738269 -6.006593959 24.98418941 0.727143474 0.809166963 0.030745076 0.150543704 1006.517934 3813664.262 0.048189264 0.052724823 9.85E-07 6.006593959 0.082023489 S(ph)RT(ph)PLLPR ddPTM_HeLa_A486_30min_R1 4 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR;S(1)RT(1)PLLPR ;;; 73.632 0.012158 16755900000 289468 273444 168995 216402 257229 295106 359295 357804 212660 464200 TRUE FALSE FALSE 269177.788 251775.3016 234434.3898 503794.7924 224964.9403 258698.8221 269395.5908 276339.84 231093.54 347961.2986 0.773585422 0.723572715 0.673736967 1.447847201 0.646522878 0.743470102 0.774211362 0.79416832 0.664135756 1 18.40856733 S(ph)RT(ph)PPAIR ddPTM_HeLa_A485_30min_R1 1 SRTPPAIR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(1)PPAIR 56.359 0.036233 732690000 82295 92193 77700 107890 117270 80332 124540 135530 84418 170960 TRUE FALSE FALSE 100601.2388 102974.1694 106444.4634 113783.7575 105594.187 84538.0593 97931.0116 102291.055 101359.9183 128342.8183 0.783847824 0.802336825 0.829376079 0.886561157 0.822751039 0.658689442 0.763042396 0.79701425 0.789759175 1 16.96964304 -10.21282217 2.973518068 1.000943719 0.7929384 0.562616577 0.054859787 8073232.053 10793229.19 70716.34412 0.015615392 6.13E-11 10.21282217 -0.208005319 S(ph)RT(ph)PPRR ddPTM_HeLa_A486_30min_R1 1 SRTPPRR 7 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(1)PPRR 55.806 0.036965 2261700000 111780 41065 62141 79589 62447 124350 90194 77293 95347 167730 TRUE FALSE FALSE 103944.7992 37810.85984 86203.65939 185287.2142 54614.31496 109008.9613 67626.50723 59695.07119 103611.7547 125729.3163 0.826734785 0.300732247 0.685628952 1.47369937 0.434380116 0.867013077 0.537873817 0.474790391 0.824085884 1 16.93996156 S(ph)RT(ph)PPSAPSQSR ddPTM_HeLa_A485_30min_R1 1 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RT(0.996)PPS(0.005)APSQSR 58.83 0.028385 8799700000 48017 47301 37283 77914 59951 48963 75102 66716 42284 103950 TRUE FALSE FALSE 58698.21599 52832.44049 51075.53318 82170.24453 53982.06794 51526.62697 59055.84417 50353.79639 50770.01095 78037.17806 0.752182709 0.677016286 0.654502565 1.052962787 0.691748078 0.660283063 0.756765501 0.645253937 0.650587479 1 16.25187399 -9.952571944 4.08322776 1.000013961 0.728307043 0.334223083 0.115655132 52854068.73 111313069.9 10983.31536 0.029654805 1.12E-10 9.952571944 -0.271706918 S(ph)RT(ph)PPVTR ddPTM_HeLa_A485_30min_R1 1 SRTPPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(1)PPVTR 63.944 0.022528 1067600000 43750 41152 35853 64809 61540 42009 64952 59100 36425 80477 TRUE FALSE FALSE 53482.03656 45964.36843 49116.51667 68349.35156 55412.86152 44208.52628 51074.47459 44605.63233 43735.16339 60415.56497 0.885236058 0.76080342 0.812977859 1.131320242 0.917195123 0.731740675 0.84538603 0.738313585 0.72390556 1 15.88263266 -6.244909927 24.25822299 0.793858571 0.901538876 0.13178337 0.11745066 1096.020111 1608492.57 0.040301024 0.040175574 5.69E-07 6.244909927 0.107680305 S(ph)RT(ph)PPVTR ddPTM_HeLa_A486_30min_R1 1 SRTPPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)RT(0.968)PPVT(0.033)R 61.78 0.026439 1240400000 42309 48361 24391 33466 42029 47220 64962 61094 29587 84369 TRUE FALSE FALSE 39343.35758 44528.69823 33835.84841 77910.53928 36757.33092 41394.4765 48707.8205 47184.22987 32151.62498 63242.45325 0.622103596 0.704095049 0.535017961 1.231934172 0.58121292 0.654536223 0.770176013 0.746084749 0.508386745 1 15.94860571 S(ph)RT(ph)SPAPWK ddPTM_HeLa_A485_30min_R1 4 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.95)RT(0.766)S(0.284)PAPWK;S(0.892)RT(0.77)S(0.338)PAPWK;S(0.947)RT(0.794)S(0.259)PAPWK;S(0.972)RT(0.856)S(0.171)PAPWK ;;; 84.506 0.0044871 15617500000 10493900 7444480 6578540 15212900 11085400 8526300 12763200 9361600 9087400 18924000 TRUE FALSE FALSE 12828231.85 8315047.178 9012215.702 16043942.21 9981698.653 8972723.884 10036238.05 7065652.922 10911157.83 14206595.07 0.902977229 0.585294867 0.634368451 1.129330577 0.702610203 0.631588628 0.706449223 0.497350202 0.768034689 1 23.76005749 -5.969183027 24.99985346 0.686014319 0.800469732 0.043832758 0.183530744 558.1522813 452791.2138 0.056826383 0.064434446 1.07E-06 5.969183027 0.114455413 S(ph)RT(ph)SPAPWK ddPTM_HeLa_A486_30min_R1 1 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.717)RT(0.679)S(0.604)PAPWK 62.088 0.023828 7939000000 6652100 6829700 3704600 2617400 6047900 8026300 8192700 7561200 5678000 8558000 TRUE FALSE FALSE 6185822.141 6288489.699 5139120.333 6093439.476 5289315.988 7036096.711 6142799.806 5839679.82 6170173.612 6415021.097 0.96427152 0.980275763 0.801107316 0.949870528 0.824520435 1.096815834 0.95756502 0.910313424 0.961832162 1 22.61302258 -6.241158494 24.99869044 0.977966135 0.90507725 0.251604286 0.069518715 1370.882578 1689783.204 0.023229657 0.023204157 5.74E-07 6.241158494 -0.072888885 S(ph)RT(ph)SPAPWKR ddPTM_HeLa_A486_30min_R1 2 SRTSPAPWKR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.968)RT(0.655)S(0.377)PAPWKR;S(0.869)RT(0.731)S(0.4)PAPWKR ; 53.377 0.012693 4165300000 14438400 12238000 7167500 5111500 13257300 11607100 15632700 15105500 8761000 16220700 TRUE FALSE FALSE 13426342.72 11268216.31 9942947.952 11899830.32 11594445.81 10175134.01 11721233.11 11666307.4 9520410.534 12158931.14 1.104237088 0.926743986 0.817748521 0.978690494 0.953574429 0.836844448 0.964001932 0.959484618 0.782997323 1 23.53551308 -4.269139731 5.115958189 0.910910059 1.112179371 0.396734337 0.070782268 0.149811551 12.88354427 0.016963935 0.105531371 5.38E-05 4.269139731 0.201269313 S(ph)RT(ph)SVQTEDDQLIAGQSAR ddPTM_HeLa_A485_30min_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 0 S(0.938)RT(0.742)S(0.32)VQTEDDQLIAGQSAR 222.4 8.22E-35 1662300000 443770 563570 508430 518990 702140 604740 655350 638720 505930 745740 TRUE FALSE FALSE 542485.1055 629474.6091 696519.4145 547341.1095 632232.4762 636403.2513 515329.1188 482072.9185 607465.5103 559840.7423 0.968998975 1.124381563 1.244138488 0.977672878 1.129307727 1.136757658 0.920492347 0.861089381 1.085068421 1 19.09465696 -6.76174617 24.99999903 0.955086638 1.100876031 0.321135625 0.092025982 9.144800753 745085.0602 0.036621905 0.026424903 1.73E-07 6.76174617 0.145789393 S(ph)RT(ph)SVQTEDDQLIAGQSAR ddPTM_HeLa_A486_30min_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 0 S(0.97)RT(0.824)S(0.206)VQTEDDQLIAGQSAR 205.12 1.02E-25 1439800000 652770 696140 494270 284630 796250 657280 733040 617290 631120 752050 TRUE FALSE FALSE 607014.1939 640975.3311 685664.581 662633.0244 696376.9003 576191.4763 549625.6387 476746.5423 685825.9898 563731.785 1.076778372 1.137021804 1.216295762 1.17544024 1.235298273 1.022102162 0.974977203 0.845697467 1.216582084 1 19.10464939 -6.367970697 5.754732836 0.997181364 1.16907725 0.407045916 0.09380381 0.222029209 10.1238821 0.032820058 0.02882176 4.29E-07 6.367970697 0.171895886 S(ph)RTASGSSVTSLDGTR ddPTM_HeLa_A485_30min_R1 2 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.467)RT(0.467)AS(0.067)GSSVTSLDGTR;S(0.373)RT(0.373)AS(0.242)GS(0.012)SVTSLDGTR ; 115.85 5.88E-05 780660000 88879 198196 141932 62174 205100 189325 225560 384480 107975 84511 TRUE FALSE FALSE 108649.8269 221373.2981 194438.5531 65570.40819 184679.5239 199237.7642 177367.2633 290185.6772 129644.5921 63443.96301 1.712532159 3.489272858 3.064728996 1.033516903 2.910907754 3.14037388 2.795652335 4.573889514 2.043450408 1 15.95319527 -5.954920896 24.99982563 2.948949433 2.399911831 0.012986335 1.062408641 424.5263431 235430.4861 0.322193279 0.36533273 1.11E-06 5.954920896 -0.549037602 S(ph)RTASGSSVTSLDGTR ddPTM_HeLa_A486_30min_R1 2 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.447)RT(0.447)AS(0.105)GS(0.001)SVTSLDGTR;S(0.498)RT(0.498)AS(0.004)GSSVTSLDGTR ; 129.53 1.27E-07 0 164605 182280 163048 73755 243130 190687 205950 214660 154087 167069 TRUE FALSE FALSE 153067.0395 167835.4689 226184.5522 171705.3674 212634.3683 167161.9767 154419.1317 165786.604 167443.3852 125233.835 1.222249878 1.34017671 1.806097787 1.371078091 1.697898722 1.334798833 1.233046419 1.323816395 1.337045897 1 16.93426487 -6.508918408 21.38795834 1.255241718 1.493127743 0.316052692 0.181268236 130.6547338 200172.8066 0.065456191 0.055298601 3.10E-07 6.508918408 0.237886025 S(ph)RTGSESSQTGTSTTSSR ddPTM_HeLa_A485_30min_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.295)RT(0.295)GS(0.295)ES(0.114)S(0.002)QTGTSTTSSR;S(0.327)RT(0.327)GS(0.327)ES(0.009)S(0.011)QTGTSTTSSR ; 48.641 0.010089 210340000 43604.8 54725 52818 66656.6 56328 47693 61367 76051 48405.4 64274.3 TRUE FALSE FALSE 53304.53733 61124.61271 72357.57614 70297.88127 50719.78654 50190.13173 48255.43913 57399.37301 58119.91978 48251.89989 1.104713751 1.266781471 1.499579836 1.456893541 1.051145896 1.040169026 1.000073349 1.18957747 1.204510494 1 15.55829813 -5.773392738 24.99939792 1.084312388 1.339304797 0.514347845 0.1194109 195.7699297 409434.3051 0.04030133 0.046047831 1.69E-06 5.773392738 0.254992409 S(ph)RTGSESSQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.492)RT(0.492)GS(0.014)ES(0.002)S(0.001)QTGTSTTSSR 52.79 0.018633 71852000 2353.1 1440.5 2476.5 1010.2 2182.8 2400.2 2124.4 2111.9 1549.7 1998.3 TRUE FALSE FALSE 2188.159841 1326.349534 3435.467123 2351.796653 1909.01287 2104.087727 1592.85265 1631.066472 1684.029244 1497.912673 1.460806014 0.885465193 2.293502942 1.570049239 1.274448707 1.404679835 1.063381517 1.088892898 1.124250615 1 10.5487378 -6.487739904 1.432776452 1.065106946 1.533085152 0.280852113 0.327121209 0.593813068 2.46887668 0.173556318 0.130348194 3.25E-07 6.487739904 0.467978206 S(ph)RTHS(ph)TSSSLGSGESPFSR ddPTM_HeLa_A485_30min_R1 1 SRTHSTSSSLGSGESPFSR 19 1 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 2 0 S(0.5)RT(0.5)HS(0.962)T(0.038)SSSLGSGESPFSR 135.34 2.34E-06 1262100000 305090 425310 397000 273130 574770 478070 693460 739370 508040 544830 TRUE FALSE FALSE 372956.218 475046.3048 543866.8205 288050.4003 517543.8807 503101.006 545296.606 558038.3482 609998.968 409013.9079 0.911842387 1.161442913 1.329702512 0.704255759 1.265345434 1.230033982 1.333198201 1.364350545 1.491389306 1 18.64179037 -5.969514052 24.99988011 1.302769389 1.048904744 0.292232462 0.191399218 261.2371155 214225.3962 0.058523267 0.066358432 1.07E-06 5.969514052 -0.253864646 S(ph)RTLTAVHDAILEDLVFPSEIVGK ddPTM_HeLa_A485_30min_R1 2 SRTLTAVHDAILEDLVFPSEIVGK 24 1 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 1 0 S(0.333)RT(0.333)LT(0.333)AVHDAILEDLVFPSEIVGK;S(0.333)RT(0.333)LT(0.333)AVHDAILEDLVFPSEIVGK ; 99.686 0.00069935 69496000 27249 31516 20954.1 31664 39914 31059 41424 50090 31179 54321 TRUE FALSE FALSE 33310.44604 35201.52205 28705.89356 33393.72414 35940.02201 32685.20121 32573.424 37805.34896 37436.33931 40779.7744 0.816837428 0.863210318 0.703924776 0.81887957 0.881319785 0.801505199 0.798764203 0.927061258 0.918012418 1 15.31556617 -7.615762802 1.258037885 0.991446089 0.810218369 0.630733905 0.048046707 0.28900052 0.855232737 0.045507492 0.015063357 2.42E-08 7.615762802 -0.18122772 S(ph)RTLTAVHDAILEDLVFPSEIVGK ddPTM_HeLa_A486_30min_R1 2 SRTLTAVHDAILEDLVFPSEIVGK 24 1 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 1 0 S(0.333)RT(0.333)LT(0.333)AVHDAILEDLVFPS(0.001)EIVGK;S(0.333)RT(0.333)LT(0.333)AVHDAILEDLVFPSEIVGK ; 99.366 0.00073067 90632000 52076 38959 24478 24081 51239 44095 58049 48958 35996 58811 TRUE FALSE FALSE 48425.74132 35871.74695 33956.53714 56061.78499 44812.12684 38655.00723 43524.52622 37811.33215 39116.16226 44084.3428 1.098479375 0.813707196 0.770262977 1.27169379 1.016508901 0.876842089 0.987301238 0.85770434 0.887302833 1 15.42797873 -7.243293286 23.69154075 0.904377679 0.971284682 0.036625018 0.139462991 1555.836027 2031304.486 0.068626235 0.039495198 5.71E-08 7.243293286 0.066907002 S(ph)RTPLLPR ddPTM_HeLa_A485_30min_R1 3 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.945)RT(0.055)PLLPR;S(0.924)RT(0.076)PLLPR;S(0.997)RT(0.003)PLLPR ;; 121.36 0.00023117 339440000 76398 98740 97062 75202 117768 104469 111115 129229 91681 107765 TRUE FALSE FALSE 93392.47153 110286.7841 132969.2729 79310.09484 106042.6044 109938.8353 87374.37252 97535.38513 110080.5358 80901.16877 1.154402006 1.363228563 1.643601383 0.980333116 1.310767274 1.358927652 1.080013724 1.20561157 1.360679177 1 16.30387292 -13.99999999 0.148837385 0.03754956 1.359530491 0.176917392 0.174651243 235.9555675 2.091052337 67.28451713 0.913280713 1.00E-14 13.99999999 1.321980931 S(ph)RTPLLPR ddPTM_HeLa_A486_30min_R1 2 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.99)RT(0.01)PLLPR;S(0.967)RT(0.033)PLLPR ; 132.25 0.0002549 366860000 98307 96694 66587 30842 85835 75861 97446 88112 75039 106139 TRUE FALSE FALSE 91416.18696 89031.61529 92371.26966 71801.73467 75068.77392 66502.04112 73063.98012 68050.82107 81543.44094 79561.10355 1.14900602 1.119034444 1.161010413 0.902472835 0.943536107 0.83586122 0.918337942 0.855327767 1.024915911 1 16.27977567 -5.262436228 24.99980491 0.916434094 1.140618717 0.761380196 0.055554163 38.30290327 960604.6592 0.014736593 0.023380382 5.46E-06 5.262436228 0.224184623 S(ph)RTPPS(ph)APSQSR ddPTM_HeLa_A485_30min_R1 1 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.976)RT(0.197)PPS(0.827)APSQSR 80.387 0.024572 2655800000 478700 495880 402270 890830 601910 478150 768670 633810 400500 1072000 TRUE FALSE FALSE 585185.1635 553868.8524 551086.4129 939493.7872 541981.727 503185.1946 604437.375 478367.1037 480876.6764 804770.1287 0.727145731 0.688232369 0.684774935 1.167406386 0.673461536 0.62525332 0.751068353 0.594414587 0.597532959 1 19.61821723 S(ph)RTPPSAPSQSR ddPTM_HeLa_A485_30min_R1 3 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.5)RT(0.5)PPSAPSQSR;S(0.5)RT(0.5)PPSAPSQSR;S(0.5)RT(0.5)PPS(0.001)APSQSR ;; 57.288 0.0095044 32455000000 366048 470437 474913 398879 547126 445683 560376 611986 416734 536982 TRUE FALSE FALSE 447474.1147 525450.5149 650603.0815 420668.7498 492652.2144 469018.2727 440647.0897 461895.4739 500368.6913 403122.2698 1.110020826 1.303451965 1.613910047 1.043526447 1.222091289 1.16346406 1.093085455 1.145794982 1.241233067 1 18.62085796 -5.312754929 24.99998348 1.13966757 1.338562093 0.346131292 0.133384264 398.5208574 194151.039 0.03745357 0.055552621 4.87E-06 5.312754929 0.198894523 S(ph)RTPPSAPSQSR ddPTM_HeLa_A486_30min_R1 2 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.5)RT(0.5)PPSAPSQSR;S(0.5)RT(0.5)PPSAPSQSR ; 80.706 0.0028089 33193000000 331978 346978 257067 123835 382223 322028 385558 381575 280818 376273 TRUE FALSE FALSE 308708.0565 319482.1996 356610.2269 288294.1383 334281.0273 282299.4595 289087.3104 294698.7022 305159.5303 282051.7917 1.094508405 1.13270757 1.264343065 1.022131916 1.185176046 1.000878093 1.024944067 1.044838965 1.081927289 1 18.10560058 -6.265795028 24.99605492 1.032971766 1.139765754 0.438099018 0.061835613 378.8018374 2173846.694 0.021053998 0.019231324 5.42E-07 6.265795028 0.106793988 S(ph)RTPPVTR ddPTM_HeLa_A486_30min_R1 4 SRTPPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.872)RT(0.128)PPVTR;S(0.5)RT(0.5)PPVTR;S(0.592)RT(0.408)PPVTR;S(0.562)RT(0.437)PPVTR ;;; 74.944 0.0026566 341440000 132578 154214 103881 80157.4 157580 161755 161805 149561.4 121464 216535 TRUE FALSE FALSE 123284.9668 141993.521 144106.5052 186610.4781 137814.847 141799.3127 121319.6776 115509.5341 131992.5973 162313.2266 0.759549726 0.87481177 0.887829712 1.149693602 0.849067263 0.873615266 0.747441722 0.71164585 0.813196805 1 17.30842104 -6.434346565 2.677654797 0.795992494 0.915770073 0.086986225 0.117545501 0.525431809 7.375630555 0.047878486 0.039852621 3.68E-07 6.434346565 0.119777579 S(ph)RTPS(ph)ASNDDQQE ddPTM_HeLa_A485_30min_R1 3 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 0 S(0.752)RT(0.248)PS(0.628)AS(0.372)NDDQQE;S(1)RTPS(0.994)AS(0.006)NDDQQE;S(1)RTPS(0.991)AS(0.009)NDDQQE ;; 252.47 1.65E-40 2558440000 1329300 1679240 1448760 1416380 1779370 1591540 2115970 2038100 1318060 1735230 TRUE FALSE FALSE 1624998.199 1875612.511 1984716.612 1493753.253 1602209.675 1674870.573 1663875.724 1538252.779 1582582.552 1302669.096 1.247437438 1.439822682 1.523576953 1.146686644 1.229943721 1.285722198 1.277281951 1.180846912 1.214876869 1 20.31303923 -11.49231675 0.079618706 0.292290807 1.653637101 0.511162961 0.096950852 115.3160751 1.124678865 18.9306388 4.411726205 3.22E-12 11.49231675 1.361346294 S(ph)RTPS(ph)ASNDDQQE ddPTM_HeLa_A486_30min_R1 2 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 0 S(0.988)RT(0.012)PS(0.975)AS(0.025)NDDQQE;S(1)RTPS(0.983)AS(0.017)NDDQQE ; 238.05 2.98E-34 1975720000 1122000 1183300 859850 408400 1297990 1075860 1258830 1193580 961790 1291950 TRUE FALSE FALSE 1043353.594 1089530.998 1192806.948 950775.8394 1135183.991 943131.3317 943857.4195 921827.8897 1045158.732 968437.3108 1.077357907 1.125040296 1.231682148 0.981762917 1.172181181 0.973869265 0.974619017 0.951871514 1.079221876 1 19.88529914 -6.272355865 24.69365828 0.991577215 1.116808818 0.444979783 0.067862904 571.7532789 1293332.262 0.023244584 0.020693245 5.34E-07 6.272355865 0.125231603 S(ph)RTPVQDHR ddPTM_HeLa_A485_30min_R1 7 SRTPVQDHR 9 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR ;;;;;; 89.301 0.0017858 21537650000 5854746 7480820 6178721 6310940 7866820 6751400 8248490 9519160 6565540 8049540 TRUE FALSE FALSE 7157114.049 8355636.825 8464487.016 6655690.672 7083571.779 7104892.864 6486132.728 7184571.085 7883183.655 6042937.819 1.184376584 1.382711038 1.400723832 1.101399828 1.17220663 1.175734895 1.073340968 1.18892024 1.304528342 1 22.52681867 -5.265614443 24.99817668 1.152441475 1.328614542 0.431658214 0.092965416 332.2056012 1989082.675 0.02561272 0.039641102 5.42E-06 5.265614443 0.176173067 S(ph)RTPVQDHR ddPTM_HeLa_A486_30min_R1 5 SRTPVQDHR 9 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.5)RT(0.5)PVQDHR;S(0.528)RT(0.472)PVQDHR;S(0.611)RT(0.389)PVQDHR;S(0.5)RT(0.5)PVQDHR;S(0.5)RT(0.5)PVQDHR ;;;; 86.772 0.0019864 10893880000 4768990 3867020 3993460 1707073 4648890 4933210 5216900 4416330 4423930 4784650 TRUE FALSE FALSE 4434708.428 3560583.252 5539834.661 3974152.215 4065782.867 4324600.707 3911576.441 3410828.067 4807399.814 3586542.497 1.236485677 0.992762042 1.544617041 1.108073365 1.133621829 1.205785436 1.090625984 0.951007292 1.340399512 1 21.77416229 S(ph)RTRAQAY(ph)RER ddPTM_HeLa_A486_30min_R1 1 SRTRAQAYRER 11 3 A6NGQ3;Q5VST9;Q5VST9-2;Q5VST9-6 A6NGQ3 OBSCN Obscurin 2 0 S(0.524)RT(0.524)RAQAY(0.951)RER 62.891 0.019587 1280300000 188370 471320 418760 356440 809610 608290 855360 845810 434380 454010 TRUE FALSE FALSE 175166.2357 433970.8867 580915.0868 829810.3335 708061.1645 533245.3644 641339.8809 653237.5269 472032.4081 340322.9409 0.51470593 1.275173767 1.706952477 2.438302664 2.08055667 1.566880455 1.884503816 1.919463687 1.387013191 1 18.37654488 -4.425054575 2.196886936 1.816999241 0.400978623 0.504032785 0.373506695 0.345507371 2.462404433 0.099284625 0.83251391 3.76E-05 4.425054575 -1.416020618 S(ph)RTS(ph)PAPWK ddPTM_HeLa_A486_30min_R1 5 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.874)RT(0.2)S(0.926)PAPWK;S(0.882)RT(0.416)S(0.702)PAPWK;S(0.899)RT(0.427)S(0.674)PAPWK;S(0.999)RT(0.002)S(0.999)PAPWK;S(0.521)RT(0.487)S(0.992)PAPWK ;;;; 126.83 0.0011517 14959110000 21146900 22791900 11900120 8735240 18659500 25253800 26495900 24491600 19613200 27648400 TRUE FALSE FALSE 19664611.51 20985786.84 16508165.16 20336080.17 16319051.52 22138242.92 19866345.57 18915397.33 21313287.97 20725060.68 0.948832518 1.012580236 0.796531572 0.981231394 0.787406694 1.068187122 0.958566341 0.912682362 1.028382416 1 24.30487299 -6.281476257 24.99159406 0.985918951 0.909449448 0.241793227 0.07737297 1409.539476 1758084.991 0.026620369 0.023509036 5.23E-07 6.281476257 -0.076469503 S(ph)RTS(ph)PITR ddPTM_HeLa_A485_30min_R1 3 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.98)RT(0.043)S(0.974)PIT(0.003)R;S(0.959)RT(0.044)S(0.997)PIT(0.001)R;S(0.793)RT(0.208)S(0.999)PITR ;; 74.077 0.015071 19810700000 232454 300007 241574 261420 364568 345236 400769 373341 283037 325535 TRUE FALSE FALSE 284162.5903 335090.2089 330942.2753 275700.7126 328270.3298 363312.0231 315141.4292 281778.5344 339839.9297 244385.1155 1.162765538 1.371156374 1.354183436 1.128140362 1.343250096 1.486637279 1.289527918 1.153010214 1.390591767 1 17.89879689 -10.24613264 3.300254996 0.999036944 1.298932195 0.393408311 0.110887628 22185317.15 30720071.31 215606.9136 0.027383183 5.67E-11 10.24613264 0.299895251 S(ph)RTS(ph)PITR ddPTM_HeLa_A486_30min_R1 4 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.964)RT(0.059)S(0.974)PIT(0.004)R;S(0.992)RT(0.009)S(0.999)PITR;S(0.907)RT(0.103)S(0.984)PIT(0.006)R;S(0.917)RT(0.182)S(0.901)PITR ;;; 88.987 0.0045498 26374100000 540755 515650 457150 295578.5 714223 432701 536504 614916 374941 544386 TRUE FALSE FALSE 502850.867 474788.016 634170.7229 688121.6857 624638.4915 379318.75 402265.0246 474913.0503 407441.1878 408068.2022 1.232271626 1.163501624 1.554080223 1.686290875 1.530720816 0.929547433 0.985778903 1.163808029 0.998463457 1 18.63845077 -6.261207796 24.9999992 1.023898767 1.439137131 0.65210114 0.15251255 15.56615816 1680468.434 0.0593276 0.055849499 5.48E-07 6.261207796 0.415238364 S(ph)RTS(ph)PVSR ddPTM_HeLa_A485_30min_R1 3 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.654)RT(0.347)S(0.998)PVS(0.001)R;S(0.596)RT(0.405)S(0.995)PVS(0.003)R;S(0.971)RT(0.03)S(0.999)PVSR ;; 81.48 0.0088524 1343500000 31681.3 110220.4 184395.1 41155.3 90394.5 84141.4 62372 64407 111232.7 35068.6 TRUE FALSE FALSE 38728.69589 123109.717 252610.5208 43403.50983 81394.50619 88546.9136 49045.71267 48611.08226 133556.0826 26326.64341 1.471083696 4.676240532 9.595242237 1.648653387 3.091716058 3.363395486 1.862968701 1.846459555 5.073038766 1 14.68423597 S(ph)RTS(ph)PVSR ddPTM_HeLa_A486_30min_R1 1 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.96)RT(0.042)S(0.998)PVSR 74.077 0.015071 337820000 17708 16656 12091 5506.3 18558 17086 23453 16356 15129 22994 TRUE FALSE FALSE 16466.76064 15336.1179 16772.95901 12818.94467 16230.28259 14978.10304 17584.81134 12632.09585 16440.3939 17236.15273 0.955361727 0.889764563 0.973126617 0.743724245 0.941641841 0.868993404 1.020228331 0.732883727 0.953831992 1 14.07315017 S(ph)RTS(ph)PVTR ddPTM_HeLa_A485_30min_R1 2 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.636)RT(0.374)S(0.99)PVTR;S(0.683)RT(0.317)S(0.999)PVTR ; 84.169 0.0065936 4336900000 70092 101386 96708 72615 115857 76402 101911 113035 91350 91547 TRUE FALSE FALSE 85683.72359 113242.2108 132484.3136 76581.77358 104321.8703 80402.29058 80136.88231 85312.98902 109683.1071 68726.0177 1.246743613 1.647734214 1.927717013 1.114305414 1.51793853 1.169895962 1.166034131 1.241349228 1.595947368 1 16.06856874 -5.279090676 24.99168823 1.271317907 1.611431919 0.32871801 0.22827469 933.0082449 1321002.737 0.063583384 0.094543366 5.26E-06 5.279090676 0.340114012 S(ph)RTS(ph)PVTR ddPTM_HeLa_A486_30min_R1 2 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.715)RT(0.293)S(0.991)PVT(0.001)R;S(0.985)RT(0.015)S(0.998)PVT(0.002)R ; 89.433 0.0044655 2865300000 186467 197109 253570 34279 263270 108728 95125 148484 240710 85993 TRUE FALSE FALSE 173396.6262 181489.365 351759.0948 79803.24436 230248.2217 95314.24483 71323.71887 114677.4346 261574.9366 64459.79308 2.689996631 2.81554371 5.457031089 1.238031346 3.571966504 1.478661973 1.106483832 1.779053719 4.057954953 1 15.97611194 -5.291814677 24.9909256 2.068026005 3.570327312 0.277208326 1.196285051 929.4348733 764679.8185 0.335523716 0.4977317 5.11E-06 5.291814677 1.502301307 S(ph)RTSPAPWK ddPTM_HeLa_A485_30min_R1 3 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.333)RT(0.333)S(0.333)PAPWK;S(0.375)RT(0.375)S(0.25)PAPWK;S(0.383)RT(0.383)S(0.234)PAPWK ;; 73.848 0.005992 2367870000 2624670 2438590 2389810 3955400 3287460 2470780 3658900 2724340 2877830 4940100 TRUE FALSE FALSE 3208518.786 2723761.888 3273900.167 4171473.486 2960148.939 2600146.22 2877146.125 2056191.343 3455384.084 3708623.986 0.86515074 0.734440024 0.882780293 1.124803567 0.798179851 0.701108074 0.775798823 0.554435109 0.93171594 1 21.82245257 -5.982365076 24.99738255 0.762149701 0.897607969 0.099607347 0.14556722 455.5833753 645783.0472 0.045011881 0.051029606 1.04E-06 5.982365076 0.135458268 S(ph)RTSPAPWK ddPTM_HeLa_A486_30min_R1 2 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.452)RT(0.452)S(0.097)PAPWK;S(0.333)RT(0.333)S(0.333)PAPWK ; 78.324 0.0045308 4863500000 4746300 5748800 3854800 1979530 5387700 5976100 6914000 6747900 5557300 6275200 TRUE FALSE FALSE 4413608.88 5293244.151 5347481.795 4608445.88 4711924.428 5238829.543 5184044.071 5211550.476 6039011.239 4703849.075 0.938297299 1.125300592 1.136831074 0.979718058 1.001716754 1.11373249 1.102085545 1.107933182 1.283844601 1 22.16541034 -6.412527011 5.402388778 1.129353924 1.043960064 0.192958556 0.08611739 0.414121424 17.14546564 0.030978255 0.027062101 3.87E-07 6.412527011 -0.08539386 S(ph)RTSPITR ddPTM_HeLa_A485_30min_R1 1 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.529)RT(0.322)S(0.149)PITR 72.652 0.0071714 7110800000 193460 339610 257660 241320 350260 269870 348530 361170 289100 314210 TRUE FALSE FALSE 236494.5096 379324.4353 352979.1561 254502.7005 315386.8846 283999.9759 274063.7183 272592.4912 347119.7182 235883.2296 1.002591452 1.608102602 1.496414801 1.07893512 1.337046661 1.203985448 1.161861819 1.15562472 1.471574384 1 17.84771333 -5.255726968 24.99307672 1.211900129 1.392942912 0.135584622 0.189942502 863.5580486 3778248.152 0.049995 0.083701192 5.55E-06 5.255726968 0.181042783 S(ph)RTSPITR ddPTM_HeLa_A486_30min_R1 2 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.333)RT(0.333)S(0.333)PITR;S(0.419)RT(0.247)S(0.334)PITR ; 80.979 0.0040878 5011900000 347117 353335 318714 102605 459142 282040 361713 432532 309026 394476 TRUE FALSE FALSE 322785.8908 325335.4478 442128.5963 238869.6254 401552.129 247244.7724 271208.5816 334053.9057 335812.6225 295696.642 1.091611621 1.100233826 1.495210068 0.807819878 1.357986774 0.836143321 0.917185193 1.129718293 1.135666 1 18.17375833 -6.266564064 24.98816366 1.006440131 1.164547235 0.164469448 0.18771595 882.6393788 4303775.927 0.064042718 0.058248503 5.41E-07 6.266564064 0.158107104 S(ph)RTSPVS(ph)R ddPTM_HeLa_A486_30min_R1 1 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.952)RT(0.114)S(0.105)PVS(0.828)R 81.615 0.032607 25892000000 2431600 2092700 1915600 830520 2399300 2356100 2539600 2466000 2098600 2754400 TRUE FALSE FALSE 2261157.397 1926866.831 2657371.622 1933492.532 2098357.421 2065428.337 1904165.219 1904545.632 2280508.338 2064680.312 1.09516102 0.933251903 1.287062024 0.936460972 1.016311053 1.000362296 0.922256684 0.922440933 1.104533387 1 20.97748699 S(ph)RTSPVTR ddPTM_HeLa_A485_30min_R1 5 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.476)RT(0.241)S(0.283)PVTR;S(0.4)RT(0.228)S(0.372)PVTR;S(0.949)RT(0.048)S(0.003)PVTR;S(0.744)RT(0.106)S(0.15)PVTR;S(0.454)RT(0.125)S(0.422)PVTR ;;;; 97.734 0.0012757 38094735000 466041 696839 628096 515549 803735 642033 682854 810950 598905 670265 TRUE FALSE FALSE 569710.2126 778328.2594 860454.8477 543712.1364 723712.3213 675648.8551 536956.6645 612063.241 719099.74 503180.2708 1.1322189 1.546817919 1.710032959 1.080551381 1.438276426 1.342757048 1.067125831 1.216389585 1.429109569 1 18.94071583 -6.143284224 1.014973294 1.199231398 1.427574864 0.157791404 0.203985343 1.002365634 2.199861039 0.110693552 0.113054219 7.19E-07 6.143284224 0.228343466 S(ph)RTSPVTR ddPTM_HeLa_A486_30min_R1 2 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.869)RT(0.13)S(0.001)PVTR;S(0.862)RT(0.113)S(0.025)PVTR ; 87.719 0.0021115 292670000 105431 109052 92803 45971 118865 110912 121481 126049 94132 122188 TRUE FALSE FALSE 98040.83135 100410.3224 128738.807 107022.8112 103955.8433 97228.80511 91085.16891 97350.39433 102291.4376 91591.32949 1.070416074 1.096286329 1.405578537 1.168481906 1.134996554 1.06155032 0.994473706 1.062877839 1.116824465 1 16.48292341 -6.076711319 2.465166691 1.046896927 1.193441288 0.348652086 0.089585315 0.3554307 4.261221759 0.03411817 0.035455407 8.38E-07 6.076711319 0.146544361 S(ph)RTSVQT(ph)EDDQLIAGQSAR ddPTM_HeLa_A485_30min_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 0 S(0.792)RT(0.208)S(0.072)VQT(0.929)EDDQLIAGQSAR 186.62 5.17E-17 941630000 641140 715120 593660 705700 850640 773400 855550 876100 693590 1002100 TRUE FALSE FALSE 783759.3811 798747.0633 813279.5383 744250.6041 765947.2948 813894.0281 672754.7533 661235.1013 832787.151 752294.9123 1.041824647 1.061747262 1.081064786 0.989306975 1.018147647 1.081881606 0.894269976 0.878957295 1.106995591 1 19.52093881 -6.749429125 24.99996488 0.959968813 1.044190247 0.245452394 0.06393997 291.2433945 606238.8327 0.024507388 0.018833041 1.78E-07 6.749429125 0.084221434 S(ph)RTSVQT(ph)EDDQLIAGQSAR ddPTM_HeLa_A486_30min_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 0 S(0.969)RT(0.031)S(0.005)VQT(0.989)EDDQLIAGQS(0.006)AR 260.89 2.13E-58 0 876870 973880 676380 311780 975820 850320 944770 847660 881220 1007300 TRUE FALSE FALSE 815405.9412 896706.202 938292.4501 725839.5965 853423.5564 745416.1638 708378.5532 654666.3223 957604.8591 755065.5236 1.079914147 1.187587268 1.242663611 0.961293522 1.130264235 0.9872205 0.938168319 0.867032465 1.268240741 1 19.52624232 -5.265099598 24.95035292 1.015806035 1.171808235 0.272330772 0.110787059 386.3611644 2633683.238 0.030548086 0.047415629 5.43E-06 5.265099598 0.1560022 S(ph)RTSVQTEDDQLIAGQSAR ddPTM_HeLa_A485_30min_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 S(0.488)RT(0.256)S(0.256)VQTEDDQLIAGQSAR;S(0.523)RT(0.239)S(0.239)VQTEDDQLIAGQSAR ; 234.03 9.77E-46 3112200000 312560 385640 352640 303610 469140 384990 473450 494890 378530 530440 TRUE FALSE FALSE 382087.8937 430737.2434 483096.2106 320195.4455 422430.7743 405147.4811 372293.5398 373517.4515 454497.4989 398211.07 0.959510979 1.081680736 1.2131662 0.804084742 1.060821273 1.017418931 0.934915094 0.937988619 1.141348227 1 18.6031738 -5.241145942 24.9948164 0.985036414 1.084475412 0.170730826 0.100550325 1488.822376 1833735.952 0.026767113 0.046295536 5.74E-06 5.241145942 0.099438997 S(ph)RTSVQTEDDQLIAGQSAR ddPTM_HeLa_A486_30min_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 S(0.475)RT(0.262)S(0.262)VQT(0.001)EDDQLIAGQSAR;S(0.468)RT(0.266)S(0.266)VQT(0.001)EDDQLIAGQSAR ; 193.5 5.02E-19 2456750000 349940 408660 294140 164716 437870 393630 437410 524830 381790 428320 TRUE FALSE FALSE 325411.0131 376276.2933 408038.8853 383467.1723 382948.2616 345067.9327 327965.3915 405337.666 414883.8646 321065.8841 1.01353345 1.17195975 1.27088833 1.194356645 1.192740433 1.074757393 1.021489382 1.262475043 1.292207877 1 18.29250985 -10.97697152 2.768282022 0.855986747 1.16682035 0.215612891 0.095001085 45712725.01 6713039.117 41944238.61 0.025782395 1.05E-11 10.97697152 0.310833603 S(ph)RVFDLQFS(ph)TDSPR ddPTM_HeLa_A486_30min_R1 1 SRVFDLQFSTDSPR 14 1 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 2 0 S(1)RVFDLQFS(0.423)T(0.366)DS(0.211)PR 64.2 0.021613 26595000 23588 27073 19506 10685 26057 23122 24078 27744 19590 28126 TRUE FALSE FALSE 21934.60301 24927.63688 27059.24559 24875.21999 22788.68809 20269.44273 18053.42973 21427.29685 21288.07697 21083.06653 1.040389593 1.182353471 1.28345872 1.179867262 1.08090007 0.961408659 0.856299993 1.016327336 1.009723939 1 14.3637971 -6.030554016 2.843125342 0.963188437 1.179603951 0.653776119 0.069454852 0.170224686 2.762862305 0.025583663 0.027277771 9.32E-07 6.030554016 0.216415514 S(ph)RVFDLQFSTDS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SRVFDLQFSTDSPR 14 1 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 2 0 S(1)RVFDLQFS(0.014)T(0.033)DS(0.953)PR 74.444 0.0088411 36246000 21091 27734 23367 23183 35312 26364 30999 33524 22292 29522 TRUE FALSE FALSE 25782.62019 30977.25005 32011.42568 24449.42859 31796.21329 27744.37827 24375.81041 25302.18644 26765.79993 22162.70871 1.163333441 1.397719496 1.444382368 1.103178718 1.434671804 1.251849611 1.099857004 1.141655867 1.207695335 1 14.4358466 -7.347495134 0.492721916 1.017019745 1.331126753 0.383750793 0.115056395 0.923075617 0.539718828 0.120889749 0.080169804 4.49E-08 7.347495134 0.314107008 S(ph)RVFDLQFSTDS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SRVFDLQFSTDSPR 14 1 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 2 0 S(1)RVFDLQFS(0.001)T(0.001)DS(0.998)PR 97.488 0.00096369 39224000 28660 29470 24545 15716 31848 30688 35388 34461 24939 32891 TRUE FALSE FALSE 26651.082 27134.68987 34049.48134 36587.64224 27853.32687 26902.02657 26533.5481 26614.98258 27100.7326 24654.87952 1.080965818 1.100580916 1.381044321 1.48399193 1.129728776 1.09114411 1.076198652 1.079501628 1.099203611 1 14.58958558 -5.983139336 24.99949039 1.078595359 1.264693462 0.389563479 0.113615176 287.0511959 425611.8417 0.038938744 0.044142504 1.04E-06 5.983139336 0.186098103 S(ph)RVFDLQFSTDSPR ddPTM_HeLa_A486_30min_R1 1 SRVFDLQFSTDSPR 14 1 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 S(1)RVFDLQFSTDSPR 110.41 0.00013196 71129000 60233 67777 49375 25548 67897 60856 65196 65467 60443 80546 TRUE FALSE FALSE 56010.97774 62406.10368 68494.32231 59477.03512 59380.72515 53348.20546 48883.27123 50561.59323 65682.24791 60376.75733 0.927691056 1.033611384 1.134448509 0.985098203 0.983503053 0.88358845 0.809637241 0.837434726 1.087873063 1 15.88170566 -5.954877003 2.491489482 0.907578794 1.030908542 0.19307333 0.089293713 0.398599089 5.014696589 0.03165991 0.035526025 1.11E-06 5.954877003 0.123329748 S(ph)RVSVSPGR ddPTM_HeLa_A486_30min_R1 1 SRVSVSPGR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 S(0.604)RVS(0.394)VS(0.001)PGR 55.452 0.0075168 0 47848 47983 55396 16580 60160 46184 60030 57784 46664 67641 TRUE FALSE FALSE 44494.10229 44180.65233 76846.81476 38599.07791 52614.17183 40486.28764 45009.85907 44627.84462 50708.87309 50703.25333 0.877539396 0.871357347 1.515619013 0.761274186 1.037688282 0.798494869 0.887711461 0.880177142 1.000110836 1 15.6297907 S(ph)RYMELYDLNR ddPTM_HeLa_A485_30min_R1 1 SRYMELYDLNR 11 1 J3QKP7;J3QLW0;H3BRL0;Q9BXC9 J3QKP7 BBS2 Bardet-Biedl syndrome 2 protein 1 0 S(0.393)RY(0.303)MELY(0.303)DLNR 73.781 0.014976 1447400000 308310 296950 313320 309890 382760 322960 393790 368000 286810 482780 TRUE FALSE FALSE 376892.4958 331675.7194 429230.1063 326818.506 344651.0704 339869.6862 309653.5495 277747.423 344370.1362 362431.8309 1.039898993 0.915139596 1.184305764 0.901737867 0.950940401 0.937747894 0.854377356 0.766343901 0.950165264 1 18.46735014 -5.45165929 24.99991634 0.899538846 1.034935039 0.346493912 0.085571715 174.0538862 61096.80504 0.024067128 0.035697308 3.53E-06 5.45165929 0.135396193 S(ph)RYMELYDLNR ddPTM_HeLa_A486_30min_R1 1 SRYMELYDLNR 11 1 J3QKP7;J3QLW0;H3BRL0;Q9BXC9 J3QKP7 BBS2 Bardet-Biedl syndrome 2 protein 1 0 S(0.586)RY(0.207)MELY(0.207)DLNR 66.989 0.021578 1072000000 145690 197370 152290 56250 194960 197750 207250 201030 173730 209950 TRUE FALSE FALSE 135477.8833 181729.6824 211260.7665 130952.8427 170506.2989 173353.6156 155393.8579 155259.8575 188789.0563 157377.1535 0.86084848 1.154739925 1.342385231 0.832095637 1.083424723 1.101517036 0.987397818 0.986546357 1.199596334 1 17.26386659 -5.269547471 24.98238699 1.030442501 1.122866087 0.081926202 0.140846552 1582.760269 4876744.951 0.039489292 0.059735708 5.38E-06 5.269547471 0.092423586 S(ph)S(ph)DSSSKLAK ddPTM_HeLa_A486_30min_R1 1 SSDSSSKLAK 10 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 2 0 S(0.4)S(0.4)DS(0.4)S(0.4)S(0.4)KLAK 72.643 0.013566 107560000 60081 102620 218130 4974.2 175660 37490 29498 52355 109710 14084 TRUE FALSE FALSE 55869.63216 94488.01746 302595.7777 11580.18898 153627.0848 32864.86497 22117.2884 40434.9094 119219.7511 10557.27473 5.292050609 8.950038707 28.66230022 1.096891885 14.55177485 3.113006511 2.094980852 3.830051831 11.29266351 1 13.36594984 -6.268312812 24.36665274 4.307320928 11.90935557 0.209066065 7.234509059 641.6094671 2274528.797 2.516376545 2.269214965 5.39E-07 6.268312812 7.602034642 S(ph)S(ph)EEREAGEI ddPTM_HeLa_A486_30min_R1 1 SSEEREAGEI 10 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 S(1)S(1)EEREAGEI 86.467 0.0031708 0 348740 322470 194840 118140 260290 313890 353890 296600 241020 501690 TRUE FALSE FALSE 324295.1269 296916.3028 270287.266 275035.8905 227642.0011 275165.4432 265342.9789 229070.6547 261911.8077 376063.5585 0.862341271 0.789537556 0.718727619 0.731354805 0.60532853 0.731699302 0.705580142 0.609127499 0.696456228 1 18.52061699 -10.00879338 4.542524919 1.000008846 0.712994538 0.582963303 0.071827527 22223202.11 16321866.61 1761.067375 0.018529713 9.80E-11 10.00879338 -0.287014307 S(ph)S(ph)GLSTPVPPSAGHLAHVR ddPTM_HeLa_A485_30min_R1 1 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 2 0 S(0.998)S(0.997)GLS(0.003)T(0.002)PVPPSAGHLAHVR 68.42 0.0013124 0 39845 45445 44614 46984 74653 55661 76496 71585 52658 69674 TRUE FALSE FALSE 48708.38279 50759.39743 61118.57514 49550.61695 67220.2852 58575.32389 60152.00469 54028.66651 63225.97759 52305.55405 0.931227738 0.970439915 1.168491114 0.947329932 1.285146222 1.119868147 1.150011806 1.032943202 1.208781338 1 15.67467653 -4.667338633 5.617949431 1.116661273 0.942184209 0.322214317 0.095060351 0.215781986 10.21084518 0.023059468 0.063039536 2.15E-05 4.667338633 -0.174477064 S(ph)S(ph)KASLGSLEGEAEAEASSPK ddPTM_HeLa_A486_30min_R1 1 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 S(0.623)S(0.676)KAS(0.512)LGS(0.189)LEGEAEAEASSPK 127.24 1.63E-06 449550000 286010 262740 99714 156200 233010 317520 480090 451990 207160 524650 TRUE FALSE FALSE 265962.176 241919.5255 138325.9312 363641.4939 203783.7131 278347.6107 359966.4041 349081.7439 225116.7956 393274.2251 0.676276651 0.615142082 0.351728952 0.924651225 0.518172054 0.707769777 0.915306372 0.887629348 0.572416856 1 18.58517611 -6.549466193 6.223834865 0.832808762 0.618533799 0.285872068 0.16850992 0.238208738 30.0676722 0.062815523 0.04927472 2.82E-07 6.549466193 -0.214274963 S(ph)S(ph)PGLGYCSPLAPPSPQLSLR ddPTM_HeLa_A485_30min_R1 1 SSPGLGYCSPLAPPSPQLSLR 21 0 A0A087WYA1;Q9UKN7 A0A087WYA1 MYO15A Unconventional myosin-XV 2 0 S(0.407)S(0.407)PGLGY(0.37)CS(0.407)PLAPPS(0.407)PQLSLR 44.788 0.020143 4205500000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)S(ph)PYPSR ddPTM_HeLa_A486_30min_R1 1 SSPYPSR 7 0 A0A087WT36;Q6ZRQ1 A0A087WT36 NSUN4 2 0 S(1)S(1)PYPSR 96.948 0.010923 3004500000 3633000 3913500 2736800 1173000 3639200 3451600 3758300 3563400 3111800 4024900 TRUE FALSE FALSE 3378345.461 3603380.007 3796562.254 2730803.28 3182737.602 3025776.685 2817933.589 2752091.608 3381533.33 3017038.842 1.119755375 1.19434326 1.258373674 0.905126988 1.05492099 1.002896165 0.9340064 0.912183022 1.120811997 1 21.52470184 -5.258893127 24.99989233 0.987243468 1.191176023 0.639746164 0.06904085 138.6476059 1361278.3 0.018774621 0.0306769 5.51E-06 5.258893127 0.203932555 S(ph)S(ph)RGGLLR ddPTM_HeLa_A485_30min_R1 3 SSRGGLLR 8 1 O75096 O75096 LRP4 Low-density lipoprotein receptor-related protein 4 2 0 S(1)S(1)RGGLLR;S(1)S(1)RGGLLR;S(1)S(1)RGGLLR ;; 87.789 0.017824 409778000 49705 67559 77869 52568 81404 59897 68190 65255 67141 74207 TRUE FALSE FALSE 60761.70577 75459.43736 106675.9835 55439.65673 73299.13193 63033.1143 53620.64944 49251.10893 80615.58285 55708.56058 1.090706799 1.354539349 1.914893912 0.995173025 1.315760651 1.13147986 0.962520821 0.88408511 1.447095061 1 15.76561142 -5.368878752 21.56214658 1.104253158 1.445674533 0.294715748 0.24675021 12.41993966 2478.138284 0.069838509 0.103587256 4.28E-06 5.368878752 0.341421375 S(ph)S(ph)RGGLLR ddPTM_HeLa_A486_30min_R1 1 SSRGGLLR 8 1 O75096 O75096 LRP4 Low-density lipoprotein receptor-related protein 4 2 0 S(1)S(1)RGGLLR 90.149 0.016156 143720000 11822 11764 14235 4660.1 17899 10383 13140 12690 10613 13610 TRUE FALSE FALSE 10993.33885 10831.7778 19747.17323 10848.94831 15653.94052 9102.051027 9852.233019 9800.764021 11532.94339 10201.96741 1.077570473 1.061734208 1.935624025 1.063417267 1.534404089 0.892185856 0.965718927 0.960673919 1.130462676 1 13.31655978 -6.271929477 24.97259909 0.985844801 1.337723652 0.314881174 0.254202139 881.9271327 2099499.115 0.088688338 0.079036069 5.35E-07 6.271929477 0.351878851 S(ph)S(ph)SPFLSKR ddPTM_HeLa_A486_30min_R1 1 SSSPFLSKR 9 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.998)S(0.675)S(0.328)PFLSKR 94.465 0.0012586 366230000 793290 727980 357260 361250 672270 763900 975630 892460 527840 1072600 TRUE FALSE FALSE 737684.4676 670292.2135 495600.6398 841008.2566 587947.6279 669657.7848 731517.0548 689266.3403 573593.5962 804013.9785 0.917502043 0.833682288 0.616407989 1.046011984 0.73126543 0.832893212 0.909831265 0.857281538 0.713412467 1 19.61686106 -10.25980185 3.917807066 1.000212368 0.829477599 0.168379266 0.114197181 49915767.84 35.37519314 96676.03173 0.026374589 5.50E-11 10.25980185 -0.170734769 S(ph)S(ph)SPVTELASRS(ph)PIRQDR ddPTM_HeLa_A485_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.998)S(0.569)S(0.433)PVTELAS(0.3)RS(0.7)PIRQDR 171.75 2.20E-12 438570000 35915 50181 44243 48619 78834 57651 79216 87860 43792 71365 TRUE FALSE FALSE 43904.16784 56049.23143 60610.3268 51274.93286 70985.01016 60669.51721 62290.85446 66312.19724 52580.65272 53575.01888 0.819489545 1.046182206 1.131316947 0.957067938 1.324964725 1.132421761 1.162684695 1.237744729 0.981439742 1 15.70927283 -3.604842557 1.051377591 1.136250525 5.54E-13 0.390238085 0.109695396 5.892090389 1.986875649 0.033036169 10.44671674 0.000248403 3.604842557 -1.136250525 S(ph)S(ph)SPVTELASRS(ph)PIRQDR ddPTM_HeLa_A486_30min_R1 2 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.992)S(0.537)S(0.457)PVT(0.036)ELAS(0.141)RS(0.837)PIRQDR;S(0.965)S(0.517)S(0.517)PVTELAS(0.286)RS(0.714)PIRQDR ; 104.81 0.00014799 1828360000 159619 179832 146079 90623 242984 182782 253134 247564 145797 226659 TRUE FALSE FALSE 148430.5324 165581.4574 202644.7009 210974.9238 212506.681 160232.2152 189797.1958 191199.0815 158434.8014 169902.1111 0.873623826 0.974569747 1.192714438 1.241743981 1.250759509 0.943085487 1.117097337 1.125348474 0.932506373 1 17.37434425 -7.760288721 24.99800031 0.966253157 1.095893302 0.142228243 0.120705666 60.42803089 1313047.582 0.100250267 0.032997851 1.74E-08 7.760288721 0.129640145 S(ph)S(ph)SRPCSPVHHHEGHAK ddPTM_HeLa_A486_30min_R1 1 SSSRPCSPVHHHEGHAK 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 2 0 S(0.51)S(0.54)S(0.535)RPCS(0.416)PVHHHEGHAK 47.808 0.023613 6185200 5734.7 2922.6 3701.4 1453.4 5901.9 5116.8 4647.4 5584.1 4065.1 5820.3 TRUE FALSE FALSE 5332.727144 2691.002532 5134.681207 3383.588651 5161.628669 4485.54124 3484.571365 4312.72233 4417.466141 4362.858996 1.222301053 0.616797961 1.176907439 0.775543893 1.183083999 1.02811969 0.798689888 0.9885083 1.012516367 1 12.09105813 -5.742604432 24.99901415 0.992403758 0.940597043 0.017860466 0.185182408 1450.124173 1924695.016 0.051824283 0.066788483 1.81E-06 5.742604432 -0.051806715 S(ph)S(ph)SSPELQTLQDILGDPGDKADVGRLS(ph)PEVK ddPTM_HeLa_A486_30min_R1 1 SSSSPELQTLQDILGDPGDKADVGRLSPEVK 31 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 3 0 S(0.48)S(0.485)S(0.465)S(0.463)PELQT(0.434)LQDILGDPGDKADVGRLS(0.674)PEVK 42.347 0.027087 689180000 91653 104720 35184 113020 72963 166230 168060 199920 55759 333540 TRUE FALSE FALSE 85228.598 96421.60582 48808.18706 263116.2717 63811.30019 145722.2327 126009.6104 154402.5802 60592.23501 250019.413 0.340887921 0.385656476 0.195217589 1.052383367 0.255225382 0.582843672 0.503999305 0.617562366 0.242350121 1 17.93168059 -10.96371478 2.810976923 1.415703307 0.474154905 0.310279681 0.239307224 97893718.46 48817611.32 265098275.8 0.058930962 1.09E-11 10.96371478 -0.941548402 S(ph)SDAHSSWYNGR ddPTM_HeLa_A485_30min_R1 2 SSDAHSSWYNGR 12 0 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 S(0.929)S(0.071)DAHSSWYNGR;S(0.92)S(0.08)DAHSSWYNGR ; 137.93 6.83E-06 489840000 234300 593110 615460 86898 769450 335380 382430 427120 462760 209788 TRUE FALSE FALSE 286419.2267 662469.0551 843144.2654 91645.0177 692840.8563 352939.9782 300720.7063 322368.1503 555631.6873 157491.7125 1.818630468 4.206374067 5.353578625 0.581903748 4.399221048 2.241006671 1.909438291 2.046889613 3.528005878 1 17.26491639 -6.052263057 0.90398911 2.155076484 3.506778593 0.113716072 1.405793664 1.305657786 2.33007801 0.783824391 0.904241675 8.87E-07 6.052263057 1.351702109 S(ph)SDAHSSWYNGR ddPTM_HeLa_A486_30min_R1 1 SSDAHSSWYNGR 12 0 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 S(0.77)S(0.23)DAHSSWYNGR 117.08 0.00016173 320260000 162790 206710 214380 9864.2 252150 95383 133090 123800 189310 46094 TRUE FALSE FALSE 151379.2616 190329.5468 297393.6773 22964.35611 220522.9958 83615.61524 99789.47432 95613.44254 205719.5432 34551.76238 4.381231267 5.50853368 8.607192711 0.664636317 6.38239501 2.420010138 2.888115322 2.76725226 5.953952246 1 15.07647168 -5.25958268 24.99877179 3.320285737 6.099940491 0.322184829 1.991031671 207.2925127 2790983.522 0.526758006 0.85603928 5.50E-06 5.25958268 2.779654753 S(ph)SDDLLAGMAGGVTVTNGVK ddPTM_HeLa_A486_30min_R1 2 SSDDLLAGMAGGVTVTNGVK 20 0 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 S(0.5)S(0.5)DDLLAGMAGGVTVTNGVK;S(0.5)S(0.5)DDLLAGMAGGVTVTNGVK ; 132.13 3.89E-07 59463000 45773 56774 26548 34535 51211 67806 73938 68925 51491 62531 TRUE FALSE FALSE 42564.54907 52275.02147 36828.09658 80399.2253 44787.63886 59440.78512 55437.93036 53232.28212 55954.28134 46872.83059 0.90808574 1.115252073 0.785702423 1.715262857 0.955513851 1.268128772 1.182730585 1.135674578 1.193746583 1 15.5164643 S(ph)SDEDAAGEPK ddPTM_HeLa_A485_30min_R1 3 SSDEDAAGEPK 11 0 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 S(0.991)S(0.009)DEDAAGEPK;S(0.99)S(0.01)DEDAAGEPK;S(0.994)S(0.006)DEDAAGEPK ;; 228.61 2.96E-18 1645180000 1239290 981940 716750 2081170 1442140 1140010 1868720 1536250 885960 2512550 TRUE FALSE FALSE 1514965.785 1096769.341 981905.6515 2194859.047 1298555.478 1199699.161 1469452.706 1159482.279 1063764.045 1886217.525 0.803176603 0.58146493 0.520568619 1.163629867 0.68844418 0.636034362 0.779047319 0.614712918 0.563966791 1 20.84706463 S(ph)SDEDAAGEPK ddPTM_HeLa_A486_30min_R1 4 SSDEDAAGEPK 11 0 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 S(0.987)S(0.013)DEDAAGEPK;S(0.989)S(0.011)DEDAAGEPK;S(0.992)S(0.008)DEDAAGEPK;S(0.989)S(0.011)DEDAAGEPK ;;; 221.09 7.13E-18 1917960000 2077710 2034050 963300 1279310 1832830 2398550 3260100 2771390 1487790 3598950 TRUE FALSE FALSE 1932073.258 1872864.47 1336315.558 2978298.333 1602939.371 2102641.288 2444388.498 2140404.996 1616752.835 2697749.495 0.716179639 0.694232164 0.495344568 1.103993658 0.594176507 0.779405683 0.906084313 0.79340391 0.599296873 1 21.36332496 -14 0.193128564 2.036679274 0.706166023 0.167888385 0.165131504 257.5718982 2.529123984 103.9206949 0.426628688 1.00E-14 14 -1.330513251 S(ph)SDEENGPPSS(ph)PDLDR ddPTM_HeLa_A485_30min_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 S(0.641)S(0.359)DEENGPPS(0.141)S(0.859)PDLDR 407.34 5.26E-152 804070000 314040 346120 290570 348120 381340 302730 432100 377370 318380 452290 TRUE FALSE FALSE 383897.1146 386595.7232 398063.9346 367136.9141 343372.4506 318580.4747 339778.3051 284819.4158 382275.9456 339542.4268 1.130630767 1.138578548 1.172354037 1.08126963 1.011279957 0.938264115 1.000694695 0.838833069 1.125856198 1 18.37323233 -5.684647152 2.292412633 0.972137155 1.14584596 0.538039251 0.067684771 0.209490894 2.250693692 0.020927735 0.028171765 2.07E-06 5.684647152 0.173708805 S(ph)SDELDAWTDFR ddPTM_HeLa_A485_30min_R1 2 SSDELDAWTDFR 12 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 0 S(0.92)S(0.08)DELDAWTDFR;S(0.839)S(0.161)DELDAWTDFR ; 180.61 8.14E-13 88353000 52736 57821 53154 60176 72271 53251 76167 72555 45768 74591 TRUE FALSE FALSE 64466.94126 64582.66297 72817.87652 63463.26251 65075.44548 56039.14002 59893.29822 54760.77249 54953.21779 55996.83645 1.151260417 1.153326993 1.300392685 1.133336569 1.162127177 1.000755464 1.069583606 0.977926182 0.9813629 1 15.7730577 -6.187163369 1.638488207 1.000199502 1.194715438 0.75193896 0.049771389 0.187337764 1.000426828 0.020937566 0.020136222 6.50E-07 6.187163369 0.194515936 S(ph)SDELDAWTDFR ddPTM_HeLa_A486_30min_R1 2 SSDELDAWTDFR 12 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 0 S(0.992)S(0.008)DELDAWTDFR;S(0.985)S(0.015)DELDAWTDFR ; 198.14 5.63E-17 103923000 107766 106346 74259 56274 109578 110892 110207 115085 97386 136356 TRUE FALSE FALSE 100212.1599 97918.75565 103014.0735 131008.7159 95833.70547 97211.27251 82632.04295 88882.65779 105827.4969 102211.5701 0.980438514 0.9580007 1.007851395 1.281740568 0.937601344 0.951078948 0.808441186 0.869594878 1.035376884 1 16.64119899 -5.967128388 24.99997379 0.920010373 1.054330485 0.254835104 0.102116373 261.9150146 199194.1774 0.033057669 0.037483637 1.08E-06 5.967128388 0.134320112 S(ph)SDGGSEEPPDRR ddPTM_HeLa_A485_30min_R1 1 SSDGGSEEPPDRR 13 1 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4 Q9HCD6 TANC2 Protein TANC2 1 0 S(0.5)S(0.5)DGGS(0.001)EEPPDRR 97.45 0.00059677 219670000 90783 94368 100550 115060 153660 99786 127430 121490 95551 140200 TRUE FALSE FALSE 110977.3652 105403.5167 137747.6292 121345.4365 138361.0709 105010.6407 100203.5395 91694.38701 114727.2093 105250.7202 1.054409556 1.001451738 1.308757118 1.152917873 1.314585502 0.997718975 0.952046117 0.871199616 1.090037285 1 16.68347058 -6.433768213 8.516701004 0.968591396 1.164243163 0.440355268 0.103772031 0.326831746 28.69595606 0.037788632 0.033262477 3.68E-07 6.433768213 0.195651766 S(ph)SDGGSEEPPDRR ddPTM_HeLa_A486_30min_R1 1 SSDGGSEEPPDRR 13 1 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4 Q9HCD6 TANC2 Protein TANC2 1 0 S(0.499)S(0.499)DGGS(0.001)EEPPDRR 74.349 0.0050143 279080000 81842 93448 77107 38641 119610 99095 109760 104690 89424 118330 TRUE FALSE FALSE 76105.29843 86042.84015 106964.8954 89958.20081 104607.3985 86869.66642 82296.88708 80854.37237 97175.34432 88699.3978 0.858013699 0.970049879 1.205925835 1.014191788 1.179347336 0.979371547 0.927817878 0.911554919 1.095558107 1 16.43663669 -6.480345996 24.96228604 0.973109624 1.051573605 0.078953458 0.103545516 1100.62573 645953.2651 0.037508001 0.033076329 3.31E-07 6.480345996 0.078463982 S(ph)SDIVSSVR ddPTM_HeLa_A485_30min_R1 4 SSDIVSSVR 9 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.981)S(0.019)DIVSSVR;S(0.991)S(0.009)DIVSSVR;S(0.991)S(0.009)DIVSSVR;S(0.991)S(0.009)DIVSSVR ;;; 200.68 3.24E-15 1519910000 713850 702470 647760 1274570 1144370 794210 1162020 1239850 915940 1572670 TRUE FALSE FALSE 872643.4697 784617.7558 887393.3795 1344196.532 1030432.505 835793.6075 913744.9342 935774.8435 1099760.757 1180632.312 0.739132295 0.664574184 0.751625524 1.138539508 0.8727802 0.707920323 0.773945389 0.792604805 0.931501489 1 20.1711283 -13.99999544 0.02459367 2.109164762 1.70E-07 0.192012209 0.126135539 4555.506555 8.442884408 522.2589463 248.5298813 1.00E-14 13.99999544 -2.109164592 S(ph)SDIVSSVR ddPTM_HeLa_A486_30min_R1 4 SSDIVSSVR 9 0 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.992)S(0.008)DIVSSVR;S(0.991)S(0.009)DIVSSVR;S(0.949)S(0.051)DIVSSVR;S(0.995)S(0.005)DIVSSVR ;;; 211.64 2.34E-10 1963580000 734536 898640 617424 348542 991600 981570 1175940 1290420 816000 1040570 TRUE FALSE FALSE 683048.8195 827428.4936 856507.108 811423.3903 867224.2817 860473.8733 881707.3742 996619.5357 886731.537 780004.499 0.875698564 1.060799642 1.098079702 1.040280398 1.111819589 1.103165269 1.130387549 1.277709984 1.136828747 1 19.57312292 -3.10624742 0.649968493 1.138041294 2.71E-12 0.506205914 0.069100625 10.49101748 1.072328379 0.030150984 12.44937423 0.000782983 3.10624742 -1.138041294 S(ph)SDKFCSPISSELAQNHEFYK ddPTM_HeLa_A485_30min_R1 1 SSDKFCSPISSELAQNHEFYK 21 1 B7ZBM3;Q8IVH2-3;Q8IVH2-2;Q8IVH2 B7ZBM3 FOXP4 Forkhead box protein P4 1 0 S(0.882)S(0.118)DKFCSPISSELAQNHEFYK 199.03 1.26E-26 288890000 144070 126040 100350 189990 197710 123910 191520 204900 112740 198870 TRUE FALSE FALSE 176117.8745 140779.2816 137473.6409 200368.6726 178025.2982 130397.736 150600.1874 154647.9537 135365.8839 149295.3689 1.179660667 0.942958128 0.920816512 1.3420957 1.192436842 0.873421171 1.008739846 1.035852316 0.906698479 1 17.18780989 -6.258447259 24.96941526 0.969920476 1.107765214 0.273694413 0.122240783 440.7944157 3678466.961 0.044540859 0.042703742 5.52E-07 6.258447259 0.137844737 S(ph)SDQDSTNKEAEAAGVKPAGVRPR ddPTM_HeLa_A485_30min_R1 1 SSDQDSTNKEAEAAGVKPAGVRPR 24 3 Q92625;A0A3B3ISP1;A0A3B3ITU5 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.829)S(0.171)DQDSTNKEAEAAGVKPAGVRPR 149.07 2.46E-09 245370000 78966 64120 41676 121240 81097 89670 130490 118840 58855 160920 TRUE FALSE FALSE 96531.71427 71618.27623 57093.68668 127863.0342 73022.69793 94364.98254 102609.7455 89694.30367 70666.65865 120805.6055 0.799066516 0.592839015 0.472607926 1.058419712 0.604464483 0.781130827 0.849379009 0.742468061 0.584961752 1 16.88232787 -11.25527385 2.373646292 2.120988475 0.722274146 0.218820776 0.158347388 10078084.02 1253756.118 61136671.19 0.040995423 5.56E-12 11.25527385 -1.398714329 S(ph)SDQDSTNKEAEAAGVKPAGVRPR ddPTM_HeLa_A486_30min_R1 1 SSDQDSTNKEAEAAGVKPAGVRPR 24 3 Q92625;A0A3B3ISP1;A0A3B3ITU5 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.979)S(0.021)DQDSTNKEAEAAGVKPAGVRPR 179.67 1.37E-19 298120000 150780 129470 49667 72734 112010 160450 224670 190480 97896 249960 TRUE FALSE FALSE 140211.1006 119210.3257 68899.39253 169328.4278 97960.66135 140655.3103 168455.1897 147111.8621 106381.7041 187368.389 0.7483178 0.636234993 0.36772154 0.903719291 0.522823844 0.750688582 0.89905875 0.785147713 0.567767619 1 17.51551805 -6.50649682 22.75840764 0.799344101 0.635881987 0.20455722 0.16525917 387.6514669 538543.655 0.05797661 0.049666906 3.12E-07 6.50649682 -0.163462114 S(ph)SDTEENVKR ddPTM_HeLa_A486_30min_R1 2 SSDTEENVKR 10 1 H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 1 0 S(0.5)S(0.5)DTEENVKR;S(0.5)S(0.5)DTEENVKR ; 86.699 0.0022109 795790000 550960 540140 397751 223372 619300 604670 631350 633860 439394 787810 TRUE FALSE FALSE 512340.5492 497337.3392 551770.8393 520021.3046 541621.6193 530071.9632 473379.5523 489543.9151 477481.0257 590537.2482 0.867583799 0.842177764 0.934353999 0.880590185 0.917167581 0.897609702 0.801608288 0.828980588 0.808553613 1 19.17166854 -6.72135024 24.99990779 0.845533884 0.890579058 0.039589687 0.05751058 318.0838265 198359.1109 0.020880288 0.016173559 1.90E-07 6.72135024 0.045045174 S(ph)SEDLAGPLPSSVSSSSTTSSKPK ddPTM_HeLa_A485_30min_R1 4 SSEDLAGPLPSSVSSSSTTSSKPK 24 1 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 0 S(0.802)S(0.198)EDLAGPLPSSVSSSSTTSSKPK;S(0.84)S(0.16)EDLAGPLPSSVSSSSTTSSKPK;S(0.827)S(0.173)EDLAGPLPSSVSSSSTTSSKPK;S(0.974)S(0.026)EDLAGPLPSSVSSSSTTSSKPK ;;; 258.44 1.34E-61 5651520000 2038480 1413900 952730 3014870 1948360 2159730 3217050 3018740 1558320 4166530 TRUE FALSE FALSE 2491932.843 1579243.306 1305184.473 3179564.714 1754374.437 2272810.123 2529700.987 2278389.282 1871060.53 3127890.75 0.796681547 0.504890814 0.417273037 1.016520386 0.560880983 0.72662708 0.808756184 0.728410761 0.598186024 1 21.57675869 -14 0.18407428 2.284377303 0.623088582 0.241262597 0.16483334 197.2214306 1.91147556 93.13281256 0.487096657 1.00E-14 14 -1.661288721 S(ph)SEDLAGPLPSSVSSSSTTSSKPK ddPTM_HeLa_A486_30min_R1 3 SSEDLAGPLPSSVSSSSTTSSKPK 24 1 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 0 S(0.972)S(0.028)EDLAGPLPSSVSSSSTTSSKPK;S(0.973)S(0.027)EDLAGPLPSSVSSSSTTSSKPK;S(0.859)S(0.141)EDLAGPLPSSVSSSSTTSSKPK ;; 247.51 1.41E-49 4609200000 1386062 1324697 503842 689469 1013077 1653948 1931689 1849056 1083325 2257520 TRUE FALSE FALSE 1288906.211 1219723.185 698943.1158 1605118.676 886007.4361 1449900.712 1448359.981 1428066.313 1177228.483 1692222.298 0.761664831 0.720781889 0.413032683 0.94852708 0.523576268 0.856802746 0.855892268 0.84389995 0.695670117 1 20.69048767 -6.304025243 24.81097884 0.841036776 0.676949367 0.258635727 0.149300375 665.5152755 387734.2439 0.050309451 0.044369107 4.97E-07 6.304025243 -0.164087409 S(ph)SEKAIQPK ddPTM_HeLa_A486_30min_R1 1 SSEKAIQPK 9 1 J3QSG5;F5H6S7;Q86VQ3-2;Q86VQ3-3;Q86VQ3 J3QSG5 TXNDC2 Thioredoxin domain-containing protein 2 1 0 S(0.5)S(0.5)EKAIQPK 42.001 0.035016 903670000 606030 920130 241750 836310 528820 680890 1184900 1046600 409880 1958900 TRUE FALSE FALSE 563550.4265 847215.5477 335362.0743 1946971.945 462490.4645 596888.7146 888425.4874 808312.0271 445408.7284 1468378.69 0.383790932 0.57697347 0.228389363 1.325933125 0.314966751 0.406495081 0.605038396 0.550479269 0.303333691 1 20.48579265 -10.21211605 4.698990022 1.000085606 0.532190462 0.191089912 0.294508515 0.000278215 4.66E-05 0.276921234 0.067150006 6.14E-11 10.21211605 -0.467895145 S(ph)SELLVR ddPTM_HeLa_A486_30min_R1 1 SSELLVR 7 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 S(0.994)S(0.006)ELLVR 141.2 0.0015053 108350000 89088 91221 72420 37601 111460 95218 117390 106960 86082 121540 TRUE FALSE FALSE 82843.39125 83992.31574 100462.9635 87537.02825 97479.64748 83470.97127 88017.78038 82607.54292 93543.65707 91105.59291 0.909311806 0.921922717 1.102709068 0.960830455 1.069963373 0.916200297 0.966107322 0.90672307 1.026760862 1 16.475252 -4.210724848 0.00245309 1.570012581 0.377771762 0.009660551 0.06606363 1937488.958 728.0022798 173702.4644 180160.3305 6.16E-05 4.210724848 -1.192240819 S(ph)SEMLVK ddPTM_HeLa_A485_30min_R1 2 SSEMLVK 7 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 S(0.996)S(0.004)EMLVK;S(0.992)S(0.008)EMLVK ; 110.87 0.0029387 305710000 341850 305350 238110 412600 447800 355590 461580 475890 324540 575480 TRUE FALSE FALSE 417893.3531 341058.0263 326196.7976 435139.2932 403215.4597 374208.1426 362959.6622 359177.2313 389672.2011 432023.4269 0.96729327 0.789443361 0.755044234 1.007212262 0.933318507 0.86617558 0.840138843 0.831383691 0.901970071 1 18.72075002 -11.92078615 1.115938951 2.348063606 0.873481879 0.197238964 0.074230728 91120.73595 2779.757421 307700.7586 0.022944072 1.20E-12 11.92078615 -1.474581727 S(ph)SEMLVK ddPTM_HeLa_A486_30min_R1 3 SSEMLVK 7 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 S(0.995)S(0.005)EMLVK;S(0.99)S(0.01)EMLVK;S(0.995)S(0.005)EMLVK ;; 128.36 0.0017088 301552000 405310 397360 244725 188100 431950 494410 581760 570780 337720 571080 TRUE FALSE FALSE 376899.862 365871.7464 339489.074 437906.306 377770.8032 433414.721 436197.4948 440825.854 366993.8415 428077.8509 0.880447006 0.854685066 0.793054519 1.022959504 0.882481545 1.012467055 1.01896768 1.029779637 0.857306307 1 18.70751367 -5.262378495 25 0.975649214 0.843924482 0.506451222 0.059762926 68.47873048 1822976.715 0.016417691 0.026049565 5.47E-06 5.262378495 -0.131724731 S(ph)SEYPISQNPEGLSADKFEVSADSSTSK ddPTM_HeLa_A486_30min_R1 1 SSEYPISQNPEGLSADKFEVSADSSTSK 28 1 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;H0Y881 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 S(0.493)S(0.493)EYPIS(0.015)QNPEGLSADKFEVSADSSTSK 176.01 6.60E-15 179480000 46387 39621 15371 20298 30941 51187 59514 60994 29495 71548 TRUE FALSE FALSE 43135.51084 36481.28766 21323.06285 47254.7698 27060.09127 44872.06837 44622.96773 47106.99769 32051.65035 53631.9151 0.804288095 0.680216017 0.397581604 0.881094209 0.504552023 0.836667277 0.832022643 0.878338907 0.597622708 1 15.71080415 -6.299535763 24.78241024 0.821519807 0.653449274 0.235688956 0.157633421 786.4085818 511571.0029 0.053405464 0.047100268 5.02E-07 6.299535763 -0.168070534 S(ph)SFSHYSGLK ddPTM_HeLa_A485_30min_R1 1 SSFSHYSGLK 10 0 Q8NC51;Q8NC51-3 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.458)S(0.458)FS(0.084)HYSGLK 71.085 0.0097285 146140000 253750 296600 281330 160650 353280 189550 238630 189130 306210 326110 TRUE FALSE FALSE 310195.8121 331284.7899 385405.6741 169425.9027 318106.2028 199474.5449 187644.7511 142745.571 367663.5383 244816.7786 1.267052911 1.353194792 1.574261684 0.692051843 1.299364384 0.814791151 0.766470142 0.583071029 1.501790606 1 17.90134291 -5.256699229 24.99638114 0.934846423 1.393672299 0.36268413 0.270977223 422.2157302 2226474.531 0.072640721 0.120801047 5.54E-06 5.256699229 0.458825876 S(ph)SFSHYSGLK ddPTM_HeLa_A486_30min_R1 1 SSFSHYSGLK 10 0 Q8NC51;Q8NC51-3 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.456)S(0.456)FS(0.088)HYSGLK 84.821 0.0033469 144840000 240590 283980 166110 57816 207560 243730 287310 257830 271180 254160 TRUE FALSE FALSE 223725.8834 261476.3906 230432.2406 134598.5699 181525.8894 213661.0707 215421.9991 199127.7374 294686.1007 190516.6817 1.174311254 1.372459295 1.209512146 0.706492306 0.952808372 1.121482218 1.130725127 1.045198434 1.546773218 1 17.5395578 -9.896108162 14.15672942 0.999999999 1.126998971 0.033895383 0.214338968 0 0 0.217594575 0.052774436 1.27E-10 9.896108162 0.126998972 S(ph)SFSQHAR ddPTM_HeLa_A485_30min_R1 4 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.5)S(0.5)FSQHAR;S(0.488)S(0.488)FS(0.024)QHAR;S(0.494)S(0.494)FS(0.012)QHAR;S(0.492)S(0.492)FS(0.017)QHAR ;;; 155 0.00010284 1434940000 635281 1104300 1105870 385116 1378810 809073 1023260 1080180 959342 682206 TRUE FALSE FALSE 776597.0668 1233438.279 1514977.332 406153.9119 1241530.835 851434.8112 804632.1417 815264.1613 1151873.14 512144.5993 1.516362894 2.408378963 2.958104672 0.793045387 2.424180274 1.662489095 1.57110344 1.59186324 2.24911703 1 18.96619167 -10.86527367 0.1665693 1.53E-13 2.225072594 0.170395748 0.586661116 66.19953669 1.680207825 30.7031797 2.698539426 1.36E-11 10.86527367 2.225072594 S(ph)SFSQHAR ddPTM_HeLa_A486_30min_R1 4 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.5)S(0.5)FSQHAR;S(0.605)S(0.394)FS(0.001)QHAR;S(0.829)S(0.17)FSQHAR;S(0.475)S(0.475)FS(0.05)QHAR ;;; 134.57 0.00036249 2790570000 1647877 1769002 1642656 90477.2 2083179 1341327 1514141 1476957 1533373 765707 TRUE FALSE FALSE 1532369.332 1628819.839 2278736.395 210635.4941 1821887.265 1175847.712 1135286.907 1140686.133 1666287.006 573968.9833 2.669777247 2.837818569 3.970138564 0.366980621 3.174191146 2.048625878 1.977958635 1.987365461 2.903095907 1 19.13061325 -7.239627509 0.091770634 4.72E-14 4.256750947 0.188456083 0.902390869 22.06725088 1.948054865 40.6908606 44.08283024 5.76E-08 7.239627509 4.256750947 S(ph)SGFISELPSEEGK ddPTM_HeLa_A485_30min_R1 1 SSGFISELPSEEGK 14 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.5)S(0.5)GFISELPSEEGK 147.7 7.24E-08 139630000 370150 334240 243160 508710 414370 386110 554370 487640 307180 673650 TRUE FALSE FALSE 452488.5905 373326.4605 333115.0027 536499.5392 373113.8679 406326.1226 435924.3207 368045.5254 368828.2084 505721.4526 0.89473877 0.738205703 0.658692648 1.060859761 0.737785328 0.803458347 0.861985028 0.727763324 0.72931098 1 18.94798345 -6.466291915 0.012670196 1.627964452 6.97E-06 0.058583667 0.12049323 5714.156061 33.56801933 2094.199924 2214.999713 3.42E-07 6.466291915 -1.627957481 S(ph)SGFLNLIK ddPTM_HeLa_A485_30min_R1 2 SSGFLNLIK 9 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.995)S(0.005)GFLNLIK;S(0.986)S(0.014)GFLNLIK ; 163.83 7.88E-07 91366000 285320 210068 173490 235853 267690 225910 301190 309250 161453 306950 TRUE FALSE FALSE 348788.4497 234633.6253 237671.1705 248737.0522 241037.8437 237738.2983 236838.296 233405.9526 193855.1362 230433.014 1.51362187 1.018229208 1.031411109 1.079433228 1.046021312 1.03170242 1.02779672 1.012901531 0.841264595 1 17.8139879 -4.261399119 8.423097438 1.015288593 1.516753748 0.862831071 0.060223461 0.030561416 32.81179174 0.015262049 0.087127194 5.48E-05 4.261399119 0.501465155 S(ph)SGGGYGGGPAGGHGGNR ddPTM_HeLa_A485_30min_R1 1 SSGGGYGGGPAGGHGGNR 18 0 Q9H2U1-3;Q9H2U1-2;Q9H2U1 Q9H2U1-3 DHX36 ATP-dependent RNA helicase DHX36 1 0 S(0.495)S(0.495)GGGY(0.01)GGGPAGGHGGNR 126.16 6.05E-07 0 69177 58542 58864 129170 71931 61703 64773 74418 79628 139140 TRUE FALSE FALSE 84565.18499 65387.97765 80640.24314 136226.23 64769.29707 64933.67367 50933.7194 56166.86882 95608.60921 104454.9587 0.809585165 0.625992088 0.772009717 1.304162404 0.620069146 0.621642807 0.487614184 0.537713762 0.915309435 1 16.67252146 S(ph)SGGREDLESSGLQR ddPTM_HeLa_A485_30min_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 S(0.969)S(0.031)GGREDLESSGLQR 203.06 1.10E-25 1331800000 273080 321770 243200 254450 450860 307680 420660 536920 324400 314970 TRUE FALSE FALSE 333825.7039 359398.2025 333169.8004 268349.9592 405970.7953 323789.649 330782.5545 405239.5281 389504.1044 236453.7756 1.411801114 1.519951211 1.409027196 1.134893949 1.71691399 1.369357069 1.39893116 1.713821347 1.647273779 1 17.85119865 -5.771005913 24.99036553 1.501050003 1.382571315 0.043755646 0.21767968 619.0154124 1617029.443 0.06578298 0.075532646 1.69E-06 5.771005913 -0.118478688 S(ph)SGGREDLESSGLQR ddPTM_HeLa_A486_30min_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 S(0.5)S(0.5)GGREDLESSGLQR 106.92 0.0001398 1564700000 492620 540480 388100 139160 629660 478530 519550 554840 433890 385010 TRUE FALSE FALSE 458089.8819 497650.3964 538382.7137 323971.5128 550682.1715 419493.8339 389553.0948 428515.0441 471499.9346 288600.99 1.587277583 1.724354433 1.865491569 1.122558563 1.908109087 1.453542602 1.349798193 1.484801019 1.633743303 1 18.13871672 -11.98676239 0.178325175 1.47E-13 1.715093727 0.385431677 0.220580607 61.38329231 1.133291402 24.44785638 0.757815244 1.03E-12 11.98676239 1.715093727 S(ph)SGLSTPVPPSAGHLAHVR ddPTM_HeLa_A485_30min_R1 4 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 S(0.832)S(0.168)GLSTPVPPSAGHLAHVR;S(0.484)S(0.484)GLS(0.032)T(0.001)PVPPSAGHLAHVR;S(0.492)S(0.492)GLS(0.008)T(0.008)PVPPSAGHLAHVR;S(0.498)S(0.498)GLS(0.002)T(0.002)PVPPSAGHLAHVR ;;; 147.67 1.38E-08 1189870000 293480 548770 528745 263037 811840 464502 664110 798410 457643 436625 TRUE FALSE FALSE 358763.6135 612943.8778 724349.7784 277406.0453 731010.3591 488822.6065 522217.4732 602598.6956 549487.7523 327782.423 1.094517547 1.86997177 2.209849362 0.846311534 2.23016949 1.491302072 1.593183272 1.838410645 1.676379555 1 18.32237897 -9.920176214 7.490782057 0.999999995 1.665573056 0.180231489 0.414690098 3.51E-08 4.88E-09 0.377282302 0.091504398 1.20E-10 9.920176214 0.665573061 S(ph)SGLSTPVPPSAGHLAHVR ddPTM_HeLa_A486_30min_R1 2 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 S(0.768)S(0.229)GLS(0.002)T(0.001)PVPPSAGHLAHVR;S(0.5)S(0.5)GLSTPVPPSAGHLAHVR ; 108.25 4.62E-05 708130000 223809 204228 198172 28697 332000 206053 263170 265831 192289 151196 TRUE FALSE FALSE 208121.1449 188044.2295 274909.5056 66808.06627 290357.4642 180632.2759 197322.0825 205307.0843 208956.7653 113335.5375 1.836327329 1.659181521 2.425624934 0.589471473 2.5619278 1.593783202 1.741043338 1.811497867 1.843700308 1 16.79024078 -10.15148241 4.654274207 0.999914228 1.781476573 0.181167208 0.500450676 0.000420587 7.67E-05 0.446793169 0.108351181 7.06E-11 10.15148241 0.781562344 S(ph)SGPYGGGGQYFAKPR ddPTM_HeLa_A485_30min_R1 4 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-2;P09651;P09651-3;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.991)S(0.009)GPYGGGGQYFAKPR;S(0.974)S(0.026)GPYGGGGQYFAKPR;S(0.989)S(0.011)GPYGGGGQYFAKPR;S(0.987)S(0.013)GPYGGGGQYFAKPR ;;; 297.63 6.52E-68 9543100000 1920470 2166060 1859400 2190030 2966700 2267520 2989300 3027520 2146090 3181850 TRUE FALSE FALSE 2347671.926 2419361.875 2547269.436 2309665.793 2671324.931 2386243.841 2350611.635 2285015.973 2576790.578 2388673.353 0.982835063 1.012847517 1.066395049 0.966924084 1.118329942 0.998982903 0.98406575 0.956604623 1.078753851 1 21.18777815 -9.040742093 12.22295561 1.000003543 1.017687242 0.011755645 0.050256217 0 0 0.047328694 0.011478894 9.10E-10 9.040742093 0.017683699 S(ph)SGPYGGGGQYFAKPR ddPTM_HeLa_A486_30min_R1 4 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-2;P09651;P09651-3;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.944)S(0.056)GPYGGGGQYFAKPR;S(0.798)S(0.202)GPYGGGGQYFAKPR;S(0.877)S(0.123)GPYGGGGQYFAKPR;S(0.886)S(0.114)GPYGGGGQYFAKPR ;;; 269.49 7.42E-52 9924600000 2705910 3001930 2103630 1192970 3354040 3194300 3545370 3800030 2560630 3724820 TRUE FALSE FALSE 2516239.682 2764046.134 2918211.873 2777294.449 2933345.028 2800219.743 2658280.927 2934846.123 2782587.47 2792100.827 0.901199433 0.98995212 1.045167082 0.994697047 1.05058707 1.002907816 0.952071967 1.051124692 0.99659276 1 21.41291961 -4.295128632 3.5372228 1.012095271 0.89180679 0.5599398 0.029215417 0.18178779 4.043520331 0.007240169 0.055089724 5.07E-05 4.295128632 -0.120288481 S(ph)SGREEDDEELLR ddPTM_HeLa_A485_30min_R1 1 SSGREEDDEELLR 13 1 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 S(0.894)S(0.106)GREEDDEELLR 140.96 1.33E-05 466950000 262660 235310 206550 441230 359280 239970 379300 375380 248520 598610 TRUE FALSE FALSE 321087.8108 262827.4576 282961.4403 465333.2776 323508.8217 252534.4581 298259.4564 283317.4664 298395.6844 449387.5436 0.714500914 0.584857016 0.629660177 1.035483258 0.719888271 0.56195251 0.6637021 0.630452425 0.664005242 1 18.77760061 -10.50400152 5.891749376 1.000371455 0.689397103 0.356324972 0.125241466 0.00065074 5.48E-05 0.129133835 0.031282943 3.13E-11 10.50400152 -0.310974353 S(ph)SGREEDDEELLR ddPTM_HeLa_A486_30min_R1 3 SSGREEDDEELLR 13 1 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 S(0.986)S(0.014)GREEDDEELLR;S(0.96)S(0.04)GREEDDEELLR;S(0.794)S(0.206)GREEDDEELLR ;; 141.97 2.34E-07 1631440000 2572510 2364800 1391620 569520 2433220 2389760 3449510 2948910 1834860 2546220 TRUE FALSE FALSE 2392190.333 2177404.636 1930492.533 1325871.342 2128022.859 2094935.708 2586406.113 2277507.567 1993907.142 1908629.939 1.253354715 1.140820749 1.011454601 0.694671772 1.114947856 1.097612306 1.35511136 1.193268282 1.0446798 1 20.86410598 -5.985369521 24.99953049 1.15738647 1.016425073 0.094926537 0.160183867 509.7935547 871094.1619 0.053047032 0.060126613 1.03E-06 5.985369521 -0.140961397 S(ph)SGRNSPSAASTSSNDSK ddPTM_HeLa_A485_30min_R1 1 SSGRNSPSAASTSSNDSK 18 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 S(0.325)S(0.325)GRNS(0.325)PS(0.024)AASTSSNDSK 52.359 0.019073 59086000 32419 32742 27526 48756 44402 35749 55838 49739 33926 65616 TRUE FALSE FALSE 39630.49471 36570.89208 37709.01285 51419.41682 39981.18098 37620.76236 43907.75515 37540.43226 40734.63701 49259.13877 0.804530808 0.742418422 0.765523186 1.043855376 0.81165002 0.76373163 0.891362623 0.762100865 0.826945782 1 15.58810378 -11.63692077 1.950245335 4.073625042 0.824029343 0.283057477 0.084233881 2931455.198 108550.7256 40016929.76 0.022359925 2.31E-12 11.63692077 -3.2495957 S(ph)SGRNSPSAASTSSNDSK ddPTM_HeLa_A486_30min_R1 2 SSGRNSPSAASTSSNDSK 18 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 S(0.37)S(0.37)GRNS(0.15)PS(0.11)AASTSSNDSK;S(0.425)S(0.425)GRNS(0.146)PS(0.003)AASTSSNDSK ; 136.64 1.80E-06 73519000 82403 76623 38990 39890 69433 89322 110409 95001 67858 117844 TRUE FALSE FALSE 76626.97523 70551.11442 54087.97219 92865.93593 60724.0657 78302.3598 82783.50041 73371.34616 73739.98608 88335.09536 0.867457888 0.79867593 0.612304452 1.051291512 0.687428541 0.886424127 0.937153009 0.830602445 0.834775644 1 16.43069911 -14 0.116620496 1.548357848 0.746108383 0.174678978 0.114342117 274.3289468 2.088949436 35.49698239 1.172822999 1.00E-14 14 -0.802249465 S(ph)SGSETEQVVDFSDR ddPTM_HeLa_A486_30min_R1 1 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 S(0.382)S(0.382)GS(0.236)ETEQVVDFSDR 197.7 3.25E-25 407850000 332200 322350 258020 129090 329870 308080 338160 329920 291330 352480 TRUE FALSE FALSE 308914.4955 296805.812 357932.254 300528.0438 288494.6287 270072.2219 253548.7913 254804.4181 316582.719 264216.7137 1.169170909 1.123342304 1.354691946 1.137430103 1.091886371 1.022161763 0.959624347 0.964376608 1.198193386 1 18.01136221 -5.802362703 2.361584337 1.024716846 1.209060396 0.473116307 0.084469428 0.25609619 2.926858628 0.028603938 0.035461568 1.58E-06 5.802362703 0.18434355 S(ph)SGSLGHRPSQEMDK ddPTM_HeLa_A486_30min_R1 1 SSGSLGHRPSQEMDK 15 1 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.363)S(0.363)GS(0.275)LGHRPSQEMDK 67.251 0.0056563 594940000 437000 431440 198650 46891 369510 381700 479440 460980 343680 349720 TRUE FALSE FALSE 406368.5567 397251.1231 275572.6 109164.6177 323162.6103 334609.7348 359479.041 356024.9171 373470.4591 262147.8357 1.55015034 1.5153706 1.051210662 0.416423876 1.232749488 1.276416164 1.37128365 1.358107406 1.424655894 1 18.00002111 -5.991813005 24.99436249 1.307219327 1.113451449 0.047981333 0.309480857 592.656002 1809325.527 0.105626606 0.119570574 1.02E-06 5.991813005 -0.193767878 S(ph)SGSPYGGGYGSGGGSGGYGSR ddPTM_HeLa_A485_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 S(0.333)S(0.333)GS(0.333)PYGGGYGSGGGSGGYGSR 64.705 0.0014948 0 8009.1 9244.9 11262 11666 17555 10722 15728 16960 11417 12686 TRUE FALSE FALSE 9790.696664 10326.01064 15428.28245 12303.28404 15807.16256 11283.38734 12367.58431 12800.53341 13708.28718 9523.613669 1.028044291 1.084253414 1.620002972 1.291871391 1.659786202 1.184780036 1.298623059 1.344083649 1.439399755 1 13.21729338 -4.611734876 9.367276127 1.367473222 1.042147594 0.299449577 0.182768971 0.291767354 27.45401899 0.043799213 0.116285873 2.44E-05 4.611734876 -0.325325628 S(ph)SGTASSVAFTPLQGLEIVNPQAAEK ddPTM_HeLa_A485_30min_R1 1 SSGTASSVAFTPLQGLEIVNPQAAEK 26 0 E7EVX8;Q8WWY3 E7EVX8 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 1 0 S(0.199)S(0.199)GT(0.199)AS(0.199)S(0.199)VAFT(0.003)PLQGLEIVNPQAAEK 115.55 3.26E-11 0 21532 18883 13508 25048 25025 19397 31360 26093 14766 26950 TRUE FALSE FALSE 26321.71912 21091.20259 18505.17131 26416.30882 22533.42313 20412.59693 24659.67981 19693.65084 17729.40076 20231.86098 1.30100336 1.04247467 0.914654926 1.305678644 1.113759291 1.008933234 1.218853759 0.973397893 0.876310923 1 14.30434141 -7.426252883 6.23704651 0.933816231 1.118856252 0.317028898 0.12062412 0.283359832 15.06014126 0.067381102 0.031556006 3.75E-08 7.426252883 0.185040021 S(ph)SIEDAQCPGLPDLIEENHVVNK ddPTM_HeLa_A485_30min_R1 1 SSIEDAQCPGLPDLIEENHVVNK 23 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 S(0.5)S(0.5)IEDAQCPGLPDLIEENHVVNK 198.59 8.19E-29 299660000 49105 49070 48570 65642 72789 42488 62402 63019 50572 79803 TRUE FALSE FALSE 60028.23784 54808.30965 66538.06417 69227.85625 65541.87158 44712.60598 49069.30292 47563.49144 60721.33653 59909.58077 1.001980603 0.914850495 1.110641459 1.155538987 1.09401319 0.746334817 0.819056022 0.793921287 1.013549682 1 15.87049912 -6.247701304 24.86945148 0.858222668 1.056228072 0.446709472 0.099798042 677.972368 1227304.982 0.03444484 0.034267249 5.65E-07 6.247701304 0.198005404 S(ph)SIEDAQCPGLPDLIEENHVVNK ddPTM_HeLa_A486_30min_R1 2 SSIEDAQCPGLPDLIEENHVVNK 23 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 S(0.5)S(0.5)IEDAQCPGLPDLIEENHVVNK;S(0.5)S(0.5)IEDAQCPGLPDLIEENHVVNK ; 259.7 2.61E-61 561720000 210313 231950 130373 86001 232350 249190 280500 263540 188146 239530 TRUE FALSE FALSE 195571.1448 213569.4373 180856.9171 200214.6742 203206.4964 218447.4714 210315.9332 203537.695 204454.6468 179550.1289 1.089228651 1.189469696 1.007278124 1.115090674 1.131753553 1.216637786 1.171349385 1.133598156 1.138705096 1 17.45402716 -5.745808891 4.029102722 1.145430195 1.09896214 0.034065069 0.066329093 0.540535846 19.52627758 0.020066072 0.024963898 1.80E-06 5.745808891 -0.046468055 S(ph)SILLDVKPWDDETDMAK ddPTM_HeLa_A485_30min_R1 1 SSILLDVKPWDDETDMAK 18 1 P24534 P24534 EEF1B2 Elongation factor 1-beta 1 0 S(0.5)S(0.5)ILLDVKPWDDETDMAK 59.975 0.011306 37036000 21985 19365 15660 42729 32380 22072 40633 39173 20996 54468 TRUE FALSE FALSE 26875.4874 21629.5683 21453.28567 45063.17707 29156.13351 23227.65579 31951.42761 29565.76033 25209.70461 40890.13001 0.657260992 0.528967951 0.524656822 1.102055119 0.71303597 0.568050426 0.781397066 0.723053713 0.616522975 1 15.31946503 -11.64765069 2.02391839 7.265362146 0.693712349 0.252794245 0.15951962 5341536.124 226239.7897 154001542.3 0.042481134 2.25E-12 11.64765069 -6.571649796 S(ph)SILLDVKPWDDETDMAK ddPTM_HeLa_A486_30min_R1 2 SSILLDVKPWDDETDMAK 18 1 P24534 P24534 EEF1B2 Elongation factor 1-beta 1 0 S(0.5)S(0.5)ILLDVKPWDDETDMAK;S(0.5)S(0.5)ILLDVKPWDDETDMAK ; 96.718 0.00023315 83750000 54117 47908 26019 36185 52088 65579 76334 79175 41209 93208 TRUE FALSE FALSE 50323.67776 44111.5956 36094.25361 84240.50869 45554.63734 57488.52974 57234.42582 61148.58088 44781.0293 69868.11012 0.720266767 0.631355214 0.516605552 1.205707562 0.65200901 0.82281501 0.819178102 0.875200156 0.640936605 1 16.0923465 -1.042990485 0.077429045 1.095791563 5.32E-31 0.133502925 0.179564339 450.714216 2.579233393 5.761170059 53.0788852 0.090575245 1.042990485 -1.095791563 S(ph)SLEEHK ddPTM_HeLa_A485_30min_R1 1 SSLEEHK 7 0 A0A0C4DGN9;A0A087WU46;A0A0A0MSL2;B4DWF2;Q9UKT9-10;Q9UKT9-14;Q9UKT9-9;Q13422-2;Q9UKS7-4;Q9UKS7-6;Q9UKT9-2;Q9UKT9-4;Q9UKT9-7;Q9UKS7-2;Q9UKT9;Q13422;Q9UKS7;Q9UKT9-15 A0A0C4DGN9 IKZF3;IKZF1;IKZF2;ZNFN1A2 Zinc finger protein Aiolos;DNA-binding protein Ikaros;Zinc finger protein Helios 1 0 S(0.864)S(0.136)LEEHK 61.999 0.033459 35981000 28330 37092 34318 34101 46479 35721 40680 44315 31969 48166 TRUE FALSE FALSE 34631.91076 41429.58674 47013.65629 35963.85128 41851.38756 37591.29632 31988.38567 33446.67677 38384.88506 36159.10263 0.957764664 1.145758156 1.30018869 0.994600216 1.157423291 1.039608109 0.884656514 0.924986361 1.061555245 1 15.14207125 -6.521423867 6.163009447 0.961029763 1.115735417 0.323123944 0.097511701 0.172689918 28.43754814 0.036815261 0.029914948 3.01E-07 6.521423867 0.154705653 S(ph)SLETLEDIEENAPLR ddPTM_HeLa_A485_30min_R1 1 SSLETLEDIEENAPLR 16 0 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.5)S(0.5)LETLEDIEENAPLR 79.771 0.0042112 17840000 30643 26479 25929 34481 38466 30421 40474 38979 40408 50906 TRUE FALSE FALSE 37459.42963 29575.48871 35521.2161 36364.60972 34636.18998 32013.79652 31826.39926 29419.33913 48517.51496 38216.07106 0.980200963 0.773901866 0.929483725 0.951552808 0.906325245 0.837705071 0.832801447 0.7698159 1.269557901 1 15.22189184 -7.757174838 24.99999735 1.134778965 0.872571038 0.573769314 0.090345485 66.84409737 391877.9835 0.063371375 0.02204715 1.75E-08 7.757174838 -0.262207928 S(ph)SLETLEDIEENAPLR ddPTM_HeLa_A486_30min_R1 1 SSLETLEDIEENAPLR 16 0 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.5)S(0.5)LETLEDIEENAPLR 55.885 0.036751 34772000 30572 33202 24662 12282 29872 37254 36794 41477 31659 35993 TRUE FALSE FALSE 28429.06067 30570.9526 34211.78687 28593.1167 26125.17521 32657.98025 27587.75203 32033.59254 34403.22761 26980.11852 1.053704069 1.133091857 1.268036938 1.059784696 0.9683121 1.210446137 1.022521528 1.187303625 1.27513256 1 14.71960907 S(ph)SLETLEDIEENAPLRR ddPTM_HeLa_A485_30min_R1 1 SSLETLEDIEENAPLRR 17 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.5)S(0.5)LETLEDIEENAPLRR 188.1 4.74E-18 232410000 17658 17675 17340 14699 23130 18286 26921 30104 21774 32034 TRUE FALSE FALSE 21585.96118 19741.9375 23754.78758 15501.96915 20827.09599 19243.42668 21169.10843 22720.9468 26143.84208 24048.51334 0.897600649 0.820921328 0.987786115 0.644612369 0.866045052 0.800191946 0.880266823 0.944796315 1.087129242 1 14.55366009 -7.397763527 2.256090155 1.041225567 0.836172015 0.476562825 0.084749429 0.272164207 2.573674131 0.062907956 0.023238011 4.00E-08 7.397763527 -0.205053552 S(ph)SLGSHQLPR ddPTM_HeLa_A485_30min_R1 4 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.499)S(0.499)LGS(0.001)HQLPR;S(0.495)S(0.495)LGS(0.009)HQLPR;S(0.5)S(0.5)LGSHQLPR;S(0.5)S(0.5)LGSHQLPR ;;; 185.25 8.26E-10 2752347000 959475 1093627 1136090 896120 1811272 1040593 1422784 1400796 1200900 1296741 TRUE FALSE FALSE 1172906.904 1221517.164 1556376.968 945072.7665 1630935.4 1095076.84 1118794.575 1057248.585 1441909.615 973487.3334 1.204850709 1.254784857 1.598764477 0.97081157 1.675353488 1.124900965 1.149264646 1.086042466 1.481179636 1 19.89280268 S(ph)SLGSHQLPR ddPTM_HeLa_A486_30min_R1 2 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.568)S(0.405)LGS(0.028)HQLPR;S(0.5)S(0.5)LGSHQLPR ; 157.03 1.14E-06 2056440000 958190 1065260 1004290 150409 1312100 1049460 1258950 1222390 943360 884030 TRUE FALSE FALSE 891025.8291 980844.918 1393177.984 350159.7532 1147524.183 919988.2953 943947.3942 944078.4816 1025131.204 662663.1339 1.34461355 1.480156157 2.102392471 0.528412907 1.731685564 1.388319718 1.424475493 1.424673312 1.546986926 1 19.33791613 -10.61391729 2.548432064 0.954306696 1.441037179 0.112686295 0.371500303 32353717.61 28121556.24 9831757.998 0.091322908 2.43E-11 10.61391729 0.486730483 S(ph)SLPRPSSILPPR ddPTM_HeLa_A485_30min_R1 3 SSLPRPSSILPPR 13 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4;H7BZB9 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.5)S(0.5)LPRPSSILPPR;S(0.5)S(0.5)LPRPSSILPPR;S(0.5)S(0.5)LPRPSSILPPR ;; 89.484 0.00080841 546610000 176775 203945 189434 227309 284745 203085 271593 307118 192264 278527 TRUE FALSE FALSE 216097.9889 227794.5937 259513.5196 239726.3151 256394.788 213718.2166 213564.9368 231796.829 230849.6213 209095.3448 1.033490196 1.089429293 1.241125286 1.146492837 1.226209929 1.022108918 1.021375856 1.108570012 1.104039985 1 17.67380142 -6.278768416 24.95022393 1.056139385 1.149293896 0.353950465 0.06474013 1033.629479 1488208.238 0.024092754 0.021296549 5.26E-07 6.278768416 0.093154511 S(ph)SLPRPSSILPPR ddPTM_HeLa_A486_30min_R1 1 SSLPRPSSILPPR 13 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4;H7BZB9 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.5)S(0.5)LPRPSSILPPR 108.34 0.00017533 148720000 130410 130530 89033 72144 137240 118440 146740 149730 114090 169450 TRUE FALSE FALSE 121268.9324 120186.3274 123508.962 167954.878 120026.0795 103828.077 110024.0999 115639.7476 123979.4131 127018.6171 0.954733528 0.946210329 0.972368971 1.322285519 0.944948719 0.817424086 0.866204518 0.910415735 0.976072767 1 16.95468044 -5.984444187 24.99774689 0.902741291 1.048288015 0.247130645 0.111139664 337.7889967 542814.4729 0.036096648 0.04091737 1.04E-06 5.984444187 0.145546724 S(ph)SLS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 SSLSPGR 7 0 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 S(0.622)S(0.378)LS(1)PGR 132.01 0.0034379 1571200000 1452200 1170700 1592900 2196300 2347600 1316600 1893300 1474500 1627700 2946500 TRUE FALSE FALSE 1775236.88 1307603.181 2182179.996 2316278.308 2113864.701 1385535.14 1488780.988 1112876.563 1954364.46 2211991.776 0.802551302 0.591142876 0.986522653 1.047145985 0.955638589 0.626374454 0.673049965 0.503110624 0.883531522 1 21.07691459 -6.262146096 24.99984092 0.702147517 0.876323097 0.12309868 0.173840608 116.6911016 4127847.738 0.061512334 0.057444469 5.47E-07 6.262146096 0.17417558 S(ph)SLSASHPMVGK ddPTM_HeLa_A485_30min_R1 1 SSLSASHPMVGK 12 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-7;Q8TEW0-6;Q8TEW0-8;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.479)S(0.479)LS(0.041)AS(0.002)HPMVGK 124.42 3.26E-05 248570000 588150 662800 529230 435560 879500 624070 896040 815210 513850 665730 TRUE FALSE FALSE 718981.9384 740308.6944 725014.2001 459353.5399 791933.8919 656745.3402 704593.734 615278.4693 616974.9817 499775.7629 1.438609056 1.481281706 1.450678992 0.919119281 1.584578426 1.314080012 1.409819736 1.231109059 1.234503607 1 18.93092141 -13.41754597 0.128625381 1.02E-08 1.497646589 0.315925209 0.167823961 156.8837243 1.47360247 41.33917742 1.374103232 3.82E-14 13.41754597 1.497646579 S(ph)SLSASHPMVGK ddPTM_HeLa_A486_30min_R1 2 SSLSASHPMVGK 12 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q8TEW0-7;Q8TEW0-6;Q8TEW0-8;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.5)S(0.5)LSASHPMVGK;S(0.5)S(0.5)LSASHPMVGK ; 153.32 6.41E-08 841990000 1402490 1580850 1232890 120607 1749590 1347300 1599600 1531110 1318040 998360 TRUE FALSE FALSE 1304182.693 1455577.689 1710298.026 280779.1911 1530140.108 1181083.824 1199363.161 1182509.677 1432288.768 748364.1578 1.742711326 1.945012563 2.285382067 0.375190592 2.044646436 1.578220726 1.602646451 1.580126018 1.913892793 1 19.51338094 -11.0442165 2.531077937 0.139334513 1.665138582 0.147635949 0.485551931 26860362.31 13402189.55 133572006.4 0.120984464 9.03E-12 11.0442165 1.525804069 S(ph)SLYFPR ddPTM_HeLa_A486_30min_R1 2 SSLYFPR 7 0 B8ZZW8;E7ENZ2;E9PG19;O94868-2;O94868 B8ZZW8 FCHSD2 F-BAR and double SH3 domains protein 2 1 0 S(0.662)S(0.328)LY(0.011)FPR;S(0.999)S(0.001)LYFPR ; 165.72 0.00041943 210759000 342990 371720 245620 162756 329760 404930 464440 427980 281400 438300 TRUE FALSE FALSE 318948.1722 342263.5534 340730.6419 378904.1932 288398.4259 354973.8536 348232.1997 330538.2967 305791.9786 328546.8271 0.970784515 1.041749684 1.037083952 1.153273025 0.877800064 1.080436103 1.059916489 1.006061448 0.930740927 1 18.32573948 -7.545034384 7.99239594 0.965954255 1.032861116 0.12610028 0.069201892 0.396062383 110.4399905 0.044782175 0.017186003 2.85E-08 7.545034384 0.066906861 S(ph)SMEMEGIFNHK ddPTM_HeLa_A485_30min_R1 10 SSMEMEGIFNHK 12 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 S(0.5)S(0.5)MEMEGIFNHK;S(0.87)S(0.13)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.846)S(0.154)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.859)S(0.141)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.879)S(0.121)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.856)S(0.144)MEMEGIFNHK ;;;;;;;;; 334.26 2.21E-73 3914530000 3273160 2829440 2377990 3622720 3927330 2901440 3906430 3276100 2972050 4979620 TRUE FALSE FALSE 4001263.15 3160318.395 3257707.457 3820620.02 3536311.236 3053354.912 3071789.318 2472631.338 3568513.174 3738292.377 1.070345159 0.84539091 0.871442661 1.022022794 0.945969678 0.816777984 0.821709221 0.661433374 0.954583755 1 21.83394798 -6.258278457 23.23046257 0.82791597 0.944687233 0.167401521 0.105134938 159.8557815 1174824.707 0.034548257 0.033128107 5.52E-07 6.258278457 0.116771263 S(ph)SMEMEGIFNHK ddPTM_HeLa_A486_30min_R1 9 SSMEMEGIFNHK 12 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.86)S(0.14)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.847)S(0.153)MEMEGIFNHK;S(0.84)S(0.16)MEMEGIFNHK;S(0.662)S(0.338)MEMEGIFNHK ;;;;;;;; 245.93 2.66E-28 3961460000 3554300 3927570 2504490 1511175 3740190 4028840 4639900 4433270 3178950 3889700 TRUE FALSE FALSE 3305161.924 3616335.049 3474295.601 3518091.771 3271060.494 3531802.683 3478947.944 3423911.199 3454503.946 2915693.802 1.133576482 1.240300009 1.19158452 1.20660536 1.121880662 1.211307813 1.193180142 1.174304104 1.184796546 1 21.47540779 -12.46371424 0.496998784 2.66E-09 1.187335598 0.732993412 0.033324221 210.6134128 4.867868315 224.7709695 0.015523735 3.44E-13 12.46371424 1.187335595 S(ph)SMSGLHLVK ddPTM_HeLa_A485_30min_R1 4 SSMSGLHLVK 10 0 Q13085;Q13085-4;A0A0C4DGT1;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 S(0.399)S(0.399)MS(0.201)GLHLVK;S(0.333)S(0.333)MS(0.333)GLHLVK;S(0.372)S(0.372)MS(0.255)GLHLVK;S(0.365)S(0.365)MS(0.27)GLHLVK ;;; 114.86 0.00037698 980850000 3158050 3202940 2683990 2977550 5008190 3583960 6641500 6636100 3541070 4352830 TRUE FALSE FALSE 3860547.327 3577495.971 3676909.591 3140206.017 4509557.019 3771610.604 5222489.269 5008586.07 4251730.268 3267749.589 1.181408557 1.094788898 1.125211553 0.960968988 1.380019153 1.154192052 1.598191393 1.532732522 1.301118752 1 21.639866 -5.776985221 24.9945986 1.359193939 1.093366748 0.30899668 0.169818904 261.7914173 420906.5014 0.052473924 0.05970439 1.67E-06 5.776985221 -0.265827191 S(ph)SMSGLHLVK ddPTM_HeLa_A486_30min_R1 2 SSMSGLHLVK 10 0 Q13085;Q13085-4;A0A0C4DGT1;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 S(0.333)S(0.333)MS(0.333)GLHLVK;S(0.333)S(0.333)MS(0.333)GLHLVK ; 88.187 0.0025833 431190000 1653780 1537340 1007110 230092 1818230 1806180 2384760 2379870 1641360 2174520 TRUE FALSE FALSE 1537858.562 1415515.58 1397089.963 535665.8042 1590170.639 1583351.875 1788067.825 1838025.553 1783634.406 1630006.038 0.943468015 0.868411249 0.857107232 0.32862811 0.975561195 0.97137792 1.096970062 1.127618862 1.094250183 1 20.63644588 -5.982602407 24.99949845 1.057898939 0.751409451 0.452811977 0.160946887 233.7928268 335947.225 0.052239258 0.059222201 1.04E-06 5.982602407 -0.306489488 S(ph)SPAAFINPPIGTVTPALK ddPTM_HeLa_A485_30min_R1 2 SSPAAFINPPIGTVTPALK 19 0 F6VRR5;Q9BY77-2;Q9BY77;Q6R954;F8WEE2;Q8WUT1;F8WCX5 F6VRR5 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 1 0 S(0.5)S(0.5)PAAFINPPIGTVTPALK;S(0.5)S(0.5)PAAFINPPIGTVTPALK ; 328.92 8.18E-102 343920000 289920 316120 230010 335830 373500 301440 427620 434900 273690 475790 TRUE FALSE FALSE 354411.7038 353087.4841 315100.2705 354175.5425 336313.0286 317222.9323 336255.4937 328240.0931 328617.0726 357184.3093 0.992237606 0.988530221 0.882178367 0.991576431 0.941567196 0.88812113 0.941406117 0.9189656 0.92002102 1 18.44630918 -4.634815802 11.71738112 0.933338373 0.991285288 0.269109449 0.036076782 0.45095188 44.16897114 0.008756618 0.023184359 2.32E-05 4.634815802 0.057946916 S(ph)SPAAFINPPIGTVTPALK ddPTM_HeLa_A486_30min_R1 1 SSPAAFINPPIGTVTPALK 19 0 F6VRR5;Q9BY77-2;Q9BY77;Q6R954;F8WEE2;Q8WUT1;F8WCX5 F6VRR5 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 1 0 S(0.5)S(0.5)PAAFINPPIGTVTPALK 254.59 6.01E-58 237010000 325920 278350 168850 107080 271970 274060 322840 305620 243390 327670 TRUE FALSE FALSE 303074.6911 256292.5323 234233.242 249287.6515 237856.9866 240249.2636 242062.0173 236036.9976 264487.2412 245619.2992 1.23392051 1.043454375 0.953643475 1.014935114 0.968396976 0.978136752 0.985517091 0.96098718 1.076817832 1 17.9060644 -4.291081981 3.009643965 0.990184085 1.265259548 0.822703835 0.033535216 0.123490628 1.717477431 0.008111868 0.07856969 5.12E-05 4.291081981 0.275075463 S(ph)SPAAKPGSTPSRPSSAK ddPTM_HeLa_A486_30min_R1 1 SSPAAKPGSTPSRPSSAK 18 2 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 1 0 S(0.89)S(0.11)PAAKPGSTPSRPSSAK 120.23 1.52E-05 476310000 798470 770920 370490 374870 716360 959650 1079500 1051900 690890 1205100 TRUE FALSE FALSE 742501.3763 709829.4916 513953.6501 872716.3049 626507.449 841258.14 809397.6822 812405.3328 750776.9015 903335.1161 0.821955621 0.785787554 0.568951257 0.966104704 0.693549313 0.931280236 0.896010426 0.899339922 0.831116701 1 19.78490177 -6.14088676 1.217618584 0.907822749 0.754847746 0.283540446 0.105295187 0.621572597 1.905414255 0.048624299 0.04880863 7.23E-07 6.14088676 -0.152975003 S(ph)SPAFGDRR ddPTM_HeLa_A485_30min_R1 3 SSPAFGDRR 9 1 P13716;P13716-2 P13716 ALAD Delta-aminolevulinic acid dehydratase 1 0 S(0.877)S(0.123)PAFGDRR;S(0.681)S(0.319)PAFGDRR;S(0.5)S(0.5)PAFGDRR ;; 183.85 1.72E-08 820060000 219436 284720 286386 257910 358548 279772 339421 328180 266234 351054 TRUE FALSE FALSE 268248.7812 318015.5273 392332.0989 271998.9702 322849.7022 294420.4293 266900.9305 247693.3404 319664.7218 263542.6985 1.017857003 1.20669451 1.48868514 1.032086913 1.225037552 1.117164054 1.012742649 0.939860379 1.212952298 1 18.0076772 -6.505320448 3.340487474 1.037076208 1.201881954 0.213707159 0.137188663 0.378401153 8.788414107 0.054462 0.044027079 3.12E-07 6.505320448 0.164805746 S(ph)SPAFGDRR ddPTM_HeLa_A486_30min_R1 2 SSPAFGDRR 9 1 P13716;P13716-2 P13716 ALAD Delta-aminolevulinic acid dehydratase 1 0 S(0.848)S(0.152)PAFGDRR;S(0.5)S(0.5)PAFGDRR ; 130.23 0.00014303 92668000 138679 142806 117894 43987 163914 119649 131868 137732 107243 127803 TRUE FALSE FALSE 128958.3182 131489.5325 163545.7141 102403.959 143354.3777 104887.9229 98873.23164 106373.4303 116538.9096 95800.29694 1.34611606 1.372537838 1.707152476 1.06893154 1.496387613 1.094860102 1.032076463 1.110366394 1.21647754 1 16.54774251 -6.274063389 24.11070365 1.093986483 1.395666576 0.491066975 0.156477991 425.6826517 813012.0326 0.053832413 0.047819569 5.32E-07 6.274063389 0.301680093 S(ph)SPAFTK ddPTM_HeLa_A485_30min_R1 1 SSPAFTK 7 0 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.589)S(0.411)PAFTK 72.485 0.013751 0 286030 294890 260570 374140 365670 287310 451880 377380 289410 556720 TRUE FALSE FALSE 349656.3867 329374.8203 356965.6862 394578.3208 329262.6109 302353.1073 355332.1465 284826.9633 347491.9324 417939.9497 0.836618722 0.788091257 0.854107597 0.944102906 0.787822775 0.723436722 0.850199046 0.681502124 0.831439858 1 18.67293614 S(ph)SPAFTKR ddPTM_HeLa_A485_30min_R1 2 SSPAFTKR 8 1 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.5)S(0.5)PAFTKR;S(0.5)S(0.5)PAFTKR ; 97.965 0.0015197 297510000 148467 193679 131337 146558 223820 192999 283510 304600 162068 221180 TRUE FALSE FALSE 181492.9719 216328.0743 179924.0217 154564.0924 201535.6949 203104.1292 222935.7724 229896.3724 194593.561 166043.8965 1.093042116 1.302836652 1.083593107 0.930862836 1.213749491 1.223195393 1.34263154 1.38455178 1.171940463 1 17.34120517 -5.982482914 24.88497316 1.251727026 1.110127869 0.155787415 0.129120539 373.7698497 530978.6808 0.040697762 0.046136975 1.04E-06 5.982482914 -0.141599157 S(ph)SPAFTKR ddPTM_HeLa_A486_30min_R1 1 SSPAFTKR 8 1 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.5)S(0.5)PAFTKR 94.692 0.0018502 93394000 60554 54633 36991 23228 63626 52992 69105 68599 36285 68212 TRUE FALSE FALSE 56309.4773 50303.68211 51314.90585 54075.95788 55645.43379 46454.38582 51814.19808 52980.50521 39430.21302 51131.27121 1.101272782 0.983814423 1.003591435 1.057590719 1.088285749 0.908531799 1.013356344 1.0361664 0.771156517 1 15.64191827 -7.03081235 1.003410485 0.919519234 1.035165291 0.243829042 0.07957164 0.841171362 1.560077291 0.064388711 0.029694504 9.32E-08 7.03081235 0.115646058 S(ph)SPAPHSGPCPSR ddPTM_HeLa_A485_30min_R1 2 SSPAPHSGPCPSR 13 0 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 0 S(0.5)S(0.5)PAPHSGPCPSR;S(0.5)S(0.5)PAPHSGPCPSR ; 125.67 2.18E-05 253460000 164248 209404 187936 180398 275460 193873 262970 259500 192722 247910 TRUE FALSE FALSE 200784.401 233891.9762 257461.3471 190252.6859 248034.2352 204023.8905 206784.3112 195857.2181 231399.5376 186110.5994 1.078844523 1.256736462 1.383378205 1.022256048 1.332724928 1.096250784 1.111082936 1.052370035 1.243344218 1 17.5058007 -6.338268825 24.99777827 1.10453702 1.2157903 0.196808842 0.115184213 209.1049312 68034.27045 0.039107715 0.034489767 4.59E-07 6.338268825 0.11125328 S(ph)SPAPHSGPCPSR ddPTM_HeLa_A486_30min_R1 2 SSPAPHSGPCPSR 13 0 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 0 S(0.5)S(0.5)PAPHSGPCPSR;S(0.5)S(0.5)PAPHSGPCPSR ; 153.94 2.76E-08 193989000 239650 275260 210060 108354 318920 269530 326520 341990 251940 350300 TRUE FALSE FALSE 222851.7726 253447.3951 291400.8576 252253.5879 278918.0798 236278.129 244821.2424 264126.3426 273778.3621 262582.5999 0.848692079 0.965210167 1.109749304 0.960663761 1.062210824 0.899824014 0.93235897 1.005879074 1.042637106 1 18.00241179 -4.308704365 4.127021896 0.998501463 0.842178976 0.377491674 0.05853702 0.216408064 7.231902686 0.015081887 0.088725021 4.91E-05 4.308704365 -0.156322487 S(ph)SPAS(ph)SPELPWRPR ddPTM_HeLa_A486_30min_R1 1 SSPASSPELPWRPR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 S(0.893)S(0.107)PAS(0.6)S(0.4)PELPWRPR 120.29 9.19E-05 74874000 41597 48231 32392 12118 50771 40948 48669 44965 32586 43944 TRUE FALSE FALSE 38681.26511 44408.99991 44935.04989 28211.31641 44402.82776 35896.25209 36491.50143 34727.45108 35410.58072 32940.13637 1.174289768 1.348172922 1.364142801 0.856442004 1.347985547 1.089742061 1.107812701 1.054259481 1.074998 1 15.00755891 -5.520913925 0.314396329 1.002750089 1.369426229 0.25270072 0.137534576 4.774428114 0.698068447 0.165920296 0.636193141 3.01E-06 5.520913925 0.36667614 S(ph)SPATSLFVELDEEEVK ddPTM_HeLa_A485_30min_R1 4 SSPATSLFVELDEEEVK 17 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 1 0 S(0.5)S(0.5)PATSLFVELDEEEVK;S(0.495)S(0.495)PAT(0.009)S(0.001)LFVELDEEEVK;S(0.494)S(0.494)PAT(0.01)S(0.001)LFVELDEEEVK;S(0.5)S(0.5)PATSLFVELDEEEVK ;;; 171.46 3.37E-12 89587000 144090 87109.4 46824.5 220339 82365.9 87958.1 135514 103263 78998.2 397152 TRUE FALSE FALSE 176142.3234 97296.08658 64146.83108 232375.5616 74165.26179 92563.45011 106560.3269 77937.58734 94852.41413 298149.3154 0.590785604 0.326333423 0.21515002 0.779393242 0.248752078 0.310460046 0.357405908 0.261404549 0.318137286 1 18.1856755 -10.36079008 4.452590134 1.000889412 0.374187227 0.558419711 0.165718998 0.001445758 0.000207551 0.158111617 0.038296392 4.36E-11 10.36079008 -0.626702184 S(ph)SPATSLFVELDEEEVK ddPTM_HeLa_A486_30min_R1 4 SSPATSLFVELDEEEVK 17 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 1 0 S(0.5)S(0.5)PATSLFVELDEEEVK;S(0.5)S(0.5)PATSLFVELDEEEVK;S(0.5)S(0.5)PATSLFVELDEEEVK;S(0.5)S(0.5)PATSLFVELDEEEVK ;;; 442.31 1.82E-193 139229000 198176 198077 93033 116580 142306 229949 251151 225943 264937 423534 TRUE FALSE FALSE 184284.8858 182380.6571 129057.8691 271404.1316 124456.6545 201580.2303 188310.3634 174500.7112 287901.9525 317478.3297 0.580464456 0.574466476 0.406509223 0.85487451 0.392016219 0.6349417 0.593143991 0.549646054 0.906839698 1 18.27629859 -7.83615102 4.171766729 0.992448034 0.573137843 0.615288291 0.120964804 0.12931455 4.006985872 0.107157087 0.028689689 1.46E-08 7.83615102 -0.419310191 S(ph)SPELTR ddPTM_HeLa_A485_30min_R1 5 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.946)S(0.054)PELTR;S(0.987)S(0.013)PELTR;S(0.798)S(0.202)PELTR;S(0.697)S(0.303)PELTR;S(0.773)S(0.227)PELTR ;;;; 212.2 4.05E-05 22374620000 5637140 6281980 6167640 6446380 7812050 6366250 7909850 7069540 6226590 8913170 TRUE FALSE FALSE 6891102.345 7016602.915 8449306.693 6798529.416 7034254.872 6699577.006 6219845.93 5335724.23 7476209.499 6691280.754 1.029862981 1.048618818 1.262733848 1.016028122 1.051256872 1.00123986 0.929544905 0.79741449 1.117306204 1 22.67385095 -6.135182062 1.577911382 0.947591812 1.100744512 0.259393632 0.097547977 0.477140675 2.380699347 0.04068473 0.040693213 7.33E-07 6.135182062 0.1531527 S(ph)SPELTR ddPTM_HeLa_A486_30min_R1 6 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.969)S(0.031)PELTR;S(0.742)S(0.256)PELT(0.001)R;S(0.779)S(0.221)PELTR;S(0.893)S(0.107)PELTR;S(0.755)S(0.245)PELTR;S(0.582)S(0.418)PELTR ;;;;; 212.2 6.70E-07 17925280000 7082160 8787640 6185400 2818077 8334670 7981110 8875250 8446570 7272820 8435670 TRUE FALSE FALSE 6585737.156 8091275.402 8580552.531 6560625.674 7289257.971 6996481.794 6654568.577 6523470.398 7903233.893 6323323.325 1.041499354 1.279592231 1.356968811 1.037528106 1.152757434 1.106456437 1.052384677 1.031652197 1.249854465 1 22.59225156 -5.280820011 24.99384279 1.093131278 1.231377363 0.279464631 0.099825682 993.9073697 1281770.165 0.027743208 0.04121383 5.24E-06 5.280820011 0.138246085 S(ph)SPELTRK ddPTM_HeLa_A486_30min_R1 1 SSPELTRK 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.5)S(0.5)PELTRK 63.426 0.015894 647440000 245710 266850 213850 87103 302720 217900 288300 305490 225720 261180 TRUE FALSE FALSE 228486.9978 245703.8341 296658.4471 202780.1859 264750.0348 191017.7134 216164.2907 235936.5958 245285.5913 195778.828 1.167066941 1.255007176 1.515273383 1.035761568 1.352291448 0.975681157 1.10412496 1.205118031 1.252870874 1 17.57886523 -5.286669562 24.9948085 1.142281663 1.306705068 0.265128358 0.136659075 1077.875318 1067817.159 0.038080388 0.056505109 5.17E-06 5.286669562 0.164423406 S(ph)SPEQPIGQGR ddPTM_HeLa_A486_30min_R1 1 SSPEQPIGQGR 11 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 S(0.5)S(0.5)PEQPIGQGR 96.618 0.0018697 1409600000 265490 360840 475510 65090 543950 256850 286600 315720 292600 236350 TRUE FALSE FALSE 246880.522 332245.7242 659640.2066 151532.8095 475722.7189 225162.4585 214889.6487 243837.4481 317962.8036 177166.4216 1.393494996 1.875331235 3.723280069 0.855313372 2.685174281 1.270909331 1.212925377 1.376318638 1.794712568 1 17.43474567 -6.288663344 24.48655315 1.347114972 2.113983741 0.216940497 0.736335736 939.62995 845145.2385 0.254336959 0.224366108 5.14E-07 6.288663344 0.766868769 S(ph)SPEQPRPSTSK ddPTM_HeLa_A485_30min_R1 2 SSPEQPRPSTSK 12 1 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.578)S(0.422)PEQPRPSTSK;S(0.913)S(0.087)PEQPRPSTSK ; 149.69 1.82E-06 7851750000 5023550 4874530 3642720 5735240 6181740 5496970 7896640 7970200 4474280 7913630 TRUE FALSE FALSE 6141021.366 5444563.881 4990313.714 6048541.639 5566264.26 5784782.849 6209458.354 6015495.953 5372226.955 5940907.681 1.033684026 0.916453204 0.839991796 1.018117426 0.936938353 0.973720374 1.045203644 1.01255503 0.904277131 1 22.50225194 -5.82772165 1.548692885 0.989304145 0.935926055 0.078950606 0.060619345 0.881622525 4.3893827 0.023381123 0.030041865 1.49E-06 5.82772165 -0.053378089 S(ph)SPEQPRPSTSK ddPTM_HeLa_A486_30min_R1 4 SSPEQPRPSTSK 12 1 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.749)S(0.251)PEQPRPSTSK;S(0.867)S(0.113)PEQPRPS(0.019)TSK;S(0.594)S(0.406)PEQPRPSTSK;S(0.923)S(0.077)PEQPRPSTSK ;;; 186.51 6.98E-12 31535060000 4566540 4456370 2918460 1876100 4581650 4788870 5846560 5671770 3769790 5737250 TRUE FALSE FALSE 4246449.128 4103231.011 4048565.871 4367655.613 4006976.735 4198067.909 4383688.849 4380431.785 4096558.432 4300605.257 0.987407324 0.954105473 0.941394439 1.015590912 0.931723908 0.976157461 1.019319046 1.018561696 0.952553929 1 22.03610828 -6.54361005 15.90441225 0.998954829 0.965482056 0.221606864 0.027917976 5.659968354 4338.571103 0.010392579 0.008061271 2.86E-07 6.54361005 -0.033472773 S(ph)SPETGTTGDVAWQISPK ddPTM_HeLa_A485_30min_R1 3 SSPETGTTGDVAWQISPK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.5)S(0.5)PETGTTGDVAWQISPK;S(0.5)S(0.5)PETGTTGDVAWQISPK;S(0.5)S(0.5)PETGTTGDVAWQISPK ;; 227.41 4.49E-35 299160000 218274 232628 207356 250090 279000 251471 358484 329930 212637 368395 TRUE FALSE FALSE 266828.2983 259831.821 284065.6132 263751.7834 251221.7804 264637.6327 281890.9649 249014.1502 255311.2955 276560.9063 0.964808446 0.939510303 1.02713582 0.953684261 0.908377774 0.95688735 1.019272639 0.900395336 0.923164806 1 18.07723771 -5.497786926 24.826252 0.948314134 0.976224506 0.074023588 0.040464641 1823.430005 1804131.51 0.011646114 0.017175219 3.18E-06 5.497786926 0.027910372 S(ph)SPETGTTGDVAWQISPK ddPTM_HeLa_A486_30min_R1 3 SSPETGTTGDVAWQISPK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.497)S(0.497)PET(0.006)GTTGDVAWQISPK;S(0.5)S(0.5)PETGTTGDVAWQISPK;S(0.5)S(0.5)PETGTTGDVAWQISPK ;; 298.15 9.65E-79 563880000 302061 288932 185618 115136 301381 300469 333995 333304 253933 372839 TRUE FALSE FALSE 280888.0837 266035.976 257494.2606 268042.4267 263578.9847 263400.1897 250425.9184 257417.9552 275944.1169 279477.6876 1.005046543 0.951904169 0.92134103 0.959083456 0.943112801 0.942473054 0.896049772 0.921068001 0.987356519 1 18.09237358 -4.283779005 3.840423616 0.941636046 1.009978341 0.247999624 0.029547302 0.287561193 8.357989879 0.007260122 0.053294973 5.20E-05 4.283779005 0.068342296 S(ph)SPFKVS(ph)PLTFGR ddPTM_HeLa_A485_30min_R1 1 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 2 0 S(0.793)S(0.207)PFKVS(0.992)PLT(0.008)FGR 129.43 2.51E-05 71088000 179020 123760 96106 361120 235750 137720 243450 179710 148940 458370 TRUE FALSE FALSE 218842.3814 138232.6554 131659.6087 380847.0712 212277.9022 144930.8062 191434.9187 135635.8407 178830.8918 344106.7947 0.635972276 0.401714403 0.382612639 1.106769983 0.61689541 0.421179728 0.556324146 0.394167865 0.519695904 1 18.39249685 -10.14835318 3.947404584 1.000191227 0.558401801 0.297237786 0.203200458 144699270.3 252739564.2 347195.3304 0.053116664 7.11E-11 10.14835318 -0.441789426 S(ph)SPFKVS(ph)PLTFGR ddPTM_HeLa_A486_30min_R1 1 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 2 0 S(0.86)S(0.14)PFKVS(0.998)PLT(0.002)FGR 124.18 3.60E-05 161240000 245190 286180 135930 196710 249880 340850 444210 373910 217740 429200 TRUE FALSE FALSE 228003.4472 263502.0546 188565.7363 457950.8212 218537.7204 298799.3925 333063.9596 288778.8554 236613.8785 321725.5264 0.708689328 0.819027503 0.586107476 1.423420847 0.679267582 0.928740084 1.035242566 0.897593855 0.735452611 1 18.29547088 S(ph)SPFKVSPLTFGR ddPTM_HeLa_A485_30min_R1 1 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 1 0 S(0.5)S(0.5)PFKVSPLTFGR 54.501 0.0078334 0 103810 107610 77609 117470 149870 144100 194710 198790 109650 176950 TRUE FALSE FALSE 126902.1764 120194.0534 106319.7987 123887.0887 134948.4166 151644.8532 153108.6179 150036.4408 131655.7492 132839.6215 0.955303658 0.90480575 0.800362102 0.932606456 1.015874744 1.141563424 1.152582461 1.129455497 0.991087958 1 17.01932599 -5.845495522 2.681835409 1.094383162 0.887197489 0.652161248 0.063469809 0.159039881 2.326058304 0.02149041 0.02569062 1.43E-06 5.845495522 -0.207185673 S(ph)SPGAGPSDHHSASR ddPTM_HeLa_A485_30min_R1 2 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 S(0.5)S(0.5)PGAGPSDHHSASR;S(0.5)S(0.5)PGAGPSDHHSASR ; 205.18 1.37E-25 329030000 87048 282500 290770 30272 324930 155408 185094 194621 204387 70175 TRUE FALSE FALSE 106411.5273 315535.9176 398337.9229 31925.68271 292578.8283 163544.9226 145547.1548 146889.8946 245405.5962 52681.66398 2.019896853 5.989482749 7.561225157 0.606011282 5.553712738 3.104399334 2.76276685 2.788254651 4.658273442 1 15.68501329 -5.258011857 24.99921008 3.109557885 5.270129489 0.227869783 1.887975796 464.1196348 3385119.468 0.504792056 0.831098484 5.52E-06 5.258011857 2.160571604 S(ph)SPGAGPSDHHSASR ddPTM_HeLa_A486_30min_R1 3 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 S(0.5)S(0.5)PGAGPSDHHSASR;S(0.5)S(0.5)PGAGPSDHHSASR;S(0.5)S(0.5)PGAGPSDHHSASR ;; 173.37 1.54E-12 1003480000 165886 208974 256260 20264.1 297929 114092 116402 138636 219325 49789.5 TRUE FALSE FALSE 154258.248 192414.1392 355490.7349 47175.84889 260559.9667 100016.489 87276.98843 107071.6092 238336.2676 37321.88512 4.133184793 5.155531092 9.52499408 1.264026421 6.981425667 2.679834867 2.338493571 2.868869267 6.385965414 1 15.18773424 -5.971700752 1.26173441 3.195191365 5.699424915 0.160721486 2.392195615 0.846038956 2.813717616 1.022212118 1.194367643 1.07E-06 5.971700752 2.504233551 S(ph)SPGAVAGLSNAPGTPR ddPTM_HeLa_A486_30min_R1 2 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 S(0.622)S(0.378)PGAVAGLSNAPGTPR;S(0.667)S(0.333)PGAVAGLSNAPGTPR ; 243.83 1.68E-42 734200000 315840 388810 269180 172039 366630 348310 403950 427930 293350 431240 TRUE FALSE FALSE 293701.247 357999.2796 373413.7049 400515.4864 320643.8467 305339.0536 302877.4375 330499.6806 318777.8142 323254.6971 0.908575342 1.107483612 1.15516869 1.239009023 0.991923241 0.944577314 0.936962216 1.022412616 0.986150602 1 18.30231181 -5.965621128 24.98842676 0.975899039 1.107768523 0.357467219 0.080309053 200.2878788 145579.2724 0.025995803 0.029476354 1.08E-06 5.965621128 0.131869484 S(ph)SPGGQDEGGFMAQGK ddPTM_HeLa_A485_30min_R1 4 SSPGGQDEGGFMAQGK 16 0 A0A1B0GTU4;F5GZ78;P49023;A0A1B0GV30 A0A1B0GTU4 PXN Paxillin 1 0 S(0.5)S(0.5)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK ;;; 259.22 1.23E-50 1461901000 1014205 872273 717535 1241140 1231990 959429 1359370 1175664 917121 1642540 TRUE FALSE FALSE 1239811.403 974277.7396 982981.0556 1308940.335 1109328.75 1009663.219 1068929.494 887330.5606 1101178.772 1233085.007 1.005454933 0.79011401 0.797172174 1.061516707 0.899636881 0.818810717 0.866874132 0.7196021 0.893027461 1 20.23384083 -6.198186541 7.72775271 0.842650296 0.906373431 0.046312606 0.101466357 0.853471917 94.46989645 0.033616416 0.033579778 6.34E-07 6.198186541 0.063723135 S(ph)SPGGQDEGGFMAQGK ddPTM_HeLa_A486_30min_R1 4 SSPGGQDEGGFMAQGK 16 0 A0A1B0GTU4;F5GZ78;P49023;A0A1B0GV30 A0A1B0GTU4 PXN Paxillin 1 0 S(0.651)S(0.349)PGGQDEGGFMAQGK;S(0.693)S(0.307)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK ;;; 305.54 3.15E-68 2155864000 2382480 2474830 1666840 1042817 2401960 2774690 3370320 3173840 2298900 3207790 TRUE FALSE FALSE 2215480.455 2278715.458 2312285.088 2427730.677 2100683.779 2432376.959 2527030.288 2451225.916 2498170.503 2404538.505 0.921374497 0.947672684 0.961633629 1.009645166 0.87363283 1.011577462 1.05094191 1.019416371 1.038939696 1 21.1973286 -6.499903983 24.3816457 1.029273556 0.947301898 0.586971053 0.034217887 396.2757053 420542.8941 0.011783654 0.010319216 3.16E-07 6.499903983 -0.081971658 S(ph)SPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSR ddPTM_HeLa_A486_30min_R1 1 SSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSR 34 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.421)S(0.421)PGLY(0.064)T(0.079)S(0.014)PGQDS(0.001)LQPTAVSPPYGGDISPVSPSR 90.485 0.00010194 64482000 6284 7359.5 7953.3 5605.8 9208.4 10172 9995.1 11656 5519.5 9282.3 TRUE FALSE FALSE 5843.524051 6776.306417 11033.03076 13050.5857 8053.396607 8917.082061 7494.220263 9002.183249 5997.934704 6957.951662 0.839833953 0.973893862 1.585672234 1.875636155 1.157437849 1.281567118 1.077072769 1.2937979 0.862025923 1 12.76444694 -7.40978437 1.121852617 0.958102703 1.303787038 0.142614471 0.288740855 1.071731489 2.391316578 0.285481607 0.10444552 3.89E-08 7.40978437 0.345684335 S(ph)SPGPDTLVVLEFNPASK ddPTM_HeLa_A485_30min_R1 3 SSPGPDTLVVLEFNPASK 18 0 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK ;; 262.19 6.29E-58 108847000 159399 142669 103820 182801 176272 137882 172501 161136 138751 253129 TRUE FALSE FALSE 194856.7576 159352.8985 142227.3383 192786.9558 158721.7408 145101.2883 135644.7521 121617.1433 166597.053 190028.5988 1.025407538 0.838573244 0.748452281 1.014515483 0.835251861 0.763576058 0.713812305 0.639993896 0.876694635 1 17.53585703 -6.000429728 24.99548794 0.774159145 0.894852408 0.138569432 0.117998267 26.89436912 1564498.386 0.036228837 0.04062788 9.99E-07 6.000429728 0.120693263 S(ph)SPGPDTLVVLEFNPASK ddPTM_HeLa_A486_30min_R1 4 SSPGPDTLVVLEFNPASK 18 0 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK ;;; 302.4 5.47E-79 161220000 209162 227504 127229 88831.8 191752 237130 251603 225896 183680 275186 TRUE FALSE FALSE 194500.8239 209475.7545 176495.4761 206804.9197 167700.6761 207875.3116 188649.2682 174464.4121 199601.5303 206277.6344 0.942907962 1.015503959 0.855621001 1.002556192 0.812985259 1.007745276 0.914540584 0.845774737 0.967635347 1 17.65422788 -4.74166779 24.99753454 0.921577738 0.979205931 0.086020465 0.068430293 539.5492458 682150.3173 0.016092596 0.042450697 1.81E-05 4.74166779 0.057628194 S(ph)SPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_HeLa_A485_30min_R1 1 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 36 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 S(0.5)S(0.5)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 302.02 1.29E-94 2019900000 21910 21426 28031 21764 32096 17132 30379 15199 18036 33301 TRUE FALSE FALSE 26783.80391 23931.58432 38400.83337 22952.91221 28900.40954 18029.00503 23888.27848 11471.42142 21655.65976 24999.67356 1.071366146 0.957275872 1.536053392 0.918128477 1.156031477 0.721169618 0.955543616 0.458862848 0.866237702 1 14.60962164 -6.25863329 24.92678264 0.776240482 1.12933467 0.377132628 0.209232954 241.9383728 2149168.73 0.068715987 0.065830903 5.51E-07 6.25863329 0.353094188 S(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_A485_30min_R1 4 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.499)S(0.499)PGQT(0.003)PEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR ;;; 282.21 3.84E-76 13822718000 262215.4 332258.6 332921.1 297283 421250 335384.3 425334.5 407210 281266.6 400383 TRUE FALSE FALSE 320544.3111 371113.353 456082.4689 313522.8175 379308.8709 352944.5033 334458.3094 307341.109 337714.2267 300574.8866 1.066437435 1.23467851 1.517367183 1.043077221 1.261944653 1.174231511 1.112728722 1.022510937 1.123561022 1 18.19736495 -6.753088853 1.100911978 1.041796145 1.240162048 0.275148276 0.124600318 0.688147524 1.659271047 0.087521006 0.050052734 1.77E-07 6.753088853 0.198365902 S(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_A486_30min_R1 10 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 S(0.82)S(0.18)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.496)S(0.496)PGQT(0.008)PEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQT(0.001)PEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.499)S(0.499)PGQT(0.001)PEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR ;;;;;;;;; 362.34 1.17E-143 25112014000 5459623 6336540 4687853 2112835.7 6240407 5727335 7331696 6577551 5175179.7 6868548 TRUE FALSE FALSE 5076931.621 5834409.493 6503115.227 4918788.286 5457676.965 5020754.639 5497228.114 5079986.224 5623768.443 5148618.874 0.986076411 1.133198948 1.263079553 0.95536073 1.060027378 0.975165333 1.067709273 0.986669697 1.092286802 1 22.29575405 -5.288320602 24.99201919 1.020884559 1.128026444 0.306536247 0.074316462 867.7606642 806772.7138 0.02060516 0.03057043 5.15E-06 5.288320602 0.107141884 S(ph)SPHGSLGSVVNSLSGLK ddPTM_HeLa_A485_30min_R1 1 SSPHGSLGSVVNSLSGLK 18 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.266)S(0.266)PHGS(0.232)LGS(0.232)VVNS(0.003)LS(0.001)GLK 54.974 0.0070955 0 147330 156990 127420 134960 219920 139200 205710 170070 160040 204630 TRUE FALSE FALSE 180103.0502 175348.6149 174557.9604 142332.5231 198023.9926 146488.2968 161758.378 128360.0658 192158.56 153619.5069 1.172397007 1.141447583 1.136300746 0.926526363 1.289054994 0.953578746 1.052980713 0.835571396 1.250873433 1 17.2290019 S(ph)SPHGSLGSVVNSLSGLKLDNILSGPK ddPTM_HeLa_A485_30min_R1 1 SSPHGSLGSVVNSLSGLKLDNILSGPK 27 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.284)S(0.284)PHGS(0.231)LGS(0.201)VVNSLSGLKLDNILSGPK 83.992 0.003051 24747000 30349 49773 33807 15248 68877 40417 54213 66056 36649 36480 TRUE FALSE FALSE 37100.03035 55593.51938 46313.61613 16080.95963 62019.36404 42533.17162 42629.94967 49855.66243 44004.11814 27386.20736 1.354697635 2.029982416 1.691129243 0.587191918 2.264620406 1.553087328 1.556621152 1.820466111 1.606798545 1 14.74116186 -10.26943224 7.189644782 0.999996564 1.614614201 0.157392284 0.421145032 2.26E-05 2.29E-06 0.397066914 0.096302334 5.38E-11 10.26943224 0.614617637 S(ph)SPHGSLGSVVNSLSGLKLDNILSGPK ddPTM_HeLa_A486_30min_R1 1 SSPHGSLGSVVNSLSGLKLDNILSGPK 27 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.434)S(0.434)PHGS(0.111)LGS(0.02)VVNSLSGLKLDNILSGPK 111.65 0.00020563 14223000 27476 23114 14462 4605.9 32680 14963 25070 19080 21375 9656.8 TRUE FALSE FALSE 25550.07429 21282.36246 20062.07371 10722.76797 28580.96967 13117.01719 18797.22084 14735.90051 23227.80221 7238.674425 3.529662033 2.940091129 2.771512093 1.481316515 3.948370654 1.81207448 2.596776666 2.035718095 3.208847483 1 12.82150981 -10.2060427 0.222813847 1.82E-31 3.010697605 0.327830155 0.728854983 24.76909771 1.150271231 18.93335158 1.583644069 6.22E-11 10.2060427 3.010697605 S(ph)SPIMR ddPTM_HeLa_A485_30min_R1 2 SSPIMR 6 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.5)S(0.5)PIMR;S(0.5)S(0.5)PIMR ; 150.02 0.003233 1511430000 647550 764560 709530 765040 974990 756880 925790 913550 758220 908540 TRUE FALSE FALSE 791595.2635 853968.6412 972014.673 806832.198 877916.5722 796509.0664 727987.4035 689500.4301 910387.7992 682057.6984 1.160598679 1.252047507 1.425120888 1.182938335 1.287158805 1.167803059 1.067339912 1.010912173 1.334766547 1 19.37953426 -6.451328393 3.656331032 1.104682911 1.265370334 0.320397629 0.108787261 0.292010686 7.551058108 0.040562746 0.034195106 3.54E-07 6.451328393 0.160687423 S(ph)SPIMR ddPTM_HeLa_A486_30min_R1 1 SSPIMR 6 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.5)S(0.5)PIMR 158.08 0.0016636 741410000 313600 308330 230740 97853 326520 302090 325880 327190 256910 303010 TRUE FALSE FALSE 291618.2594 283896.8079 320088.7074 227806.7292 285564.8169 264821.2072 244341.3772 252695.9795 279179.1657 227134.3237 1.283902207 1.249907118 1.409248511 1.002960387 1.257250829 1.165923331 1.075757169 1.112539819 1.229136843 1 17.79318621 -1.000000015 0.117982549 0.964910636 2.055707503 0.368948436 0.099206381 105.645016 0.86136283 0.717353825 18.90095587 0.099999997 1.000000015 1.090796867 S(ph)SPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK ddPTM_HeLa_A485_30min_R1 2 SSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK 46 0 Q9NZB2;Q9NZB2-4;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 S(0.5)S(0.5)PINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK;S(0.5)S(0.5)PINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK ; 306.2 1.33E-96 853370000 41269 117098 111500 9589.1 172376 57717 82409 89491 93684 38777 TRUE FALSE FALSE 50449.14667 130791.5925 152748.4899 10112.92825 155213.6402 60738.97287 64801.64393 67543.19193 112485.5195 29110.60754 1.733015933 4.492918683 5.247176298 0.347396675 5.331858498 2.086489359 2.226049176 2.320226118 3.864073236 1 14.82925733 -9.700823533 0.232745263 9.51E-10 3.574813537 0.129466345 1.556150677 27.46332089 1.719203192 25.39449894 3.229071731 1.99E-10 9.700823533 3.574813536 S(ph)SPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK ddPTM_HeLa_A486_30min_R1 2 SSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK 46 0 Q9NZB2;Q9NZB2-4;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 S(0.5)S(0.5)PINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK;S(0.5)S(0.5)PINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK ; 315 8.93E-113 596600000 91810 94488 100255 4658.5 138349 43338 62379 65890 106861 5713.2 TRUE FALSE FALSE 85374.59311 87000.42676 139076.4209 10845.22343 120995.9784 37991.39819 46771.11442 50888.28537 116123.7975 4282.577533 19.93532924 20.31496828 32.47493357 2.532405623 28.25307363 8.871152453 10.92125339 11.88263026 27.11539876 1 12.06426365 -7.734661042 0.16669926 4.08E-13 26.79496985 0.211512688 9.219795787 7.684206566 1.186279236 86.48134569 70.94077564 1.84E-08 7.734661042 26.79496985 S(ph)SPKEELHPAAPSQLAPSFSSSSSSSSGPR ddPTM_HeLa_A485_30min_R1 3 SSPKEELHPAAPSQLAPSFSSSSSSSSGPR 30 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.5)S(0.5)PKEELHPAAPSQLAPSFSSSSSSSSGPR;S(0.488)S(0.488)PKEELHPAAPS(0.024)QLAPSFSSSSSSSSGPR;S(0.461)S(0.461)PKEELHPAAPS(0.077)QLAPSFSSSSSSSSGPR ;; 182.97 6.54E-21 1816730000 398441 357007 292595 633763 576675 397066 793380 705811 381257 1037220 TRUE FALSE FALSE 487072.8258 398755.8631 400838.0664 668383.8679 519259.2122 417855.7618 623867.8817 532709.7456 457771.7828 778660.1426 0.62552685 0.512105142 0.514779227 0.858376885 0.666862452 0.536634327 0.801206903 0.684136398 0.58789677 1 19.57063426 -14 0.19642462 2.548389053 0.586865484 0.486551002 0.110212879 125.8826692 1.240837197 76.61450313 0.288069542 1.00E-14 14 -1.961523569 S(ph)SPKEELHPAAPSQLAPSFSSSSSSSSGPR ddPTM_HeLa_A486_30min_R1 2 SSPKEELHPAAPSQLAPSFSSSSSSSSGPR 30 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.5)S(0.5)PKEELHPAAPSQLAPSFSSSSSSSSGPR;S(0.5)S(0.5)PKEELHPAAPSQLAPSFSSSSSSSSGPR ; 201.75 4.73E-29 1256140000 712960 609910 307010 234530 664400 866040 1065450 920730 577290 1090850 TRUE FALSE FALSE 662985.1857 561578.5103 425892.494 545997.6925 581064.7567 759196.79 798863.1408 711099.8784 627329.962 817694.0598 0.810798584 0.68678316 0.520845772 0.667728579 0.71061389 0.928460689 0.976970704 0.869640509 0.767193982 1 19.64120163 -6.173449297 4.087138668 0.904735815 0.66493291 0.627760353 0.088355549 0.163406746 4.99291893 0.031778183 0.03156872 6.71E-07 6.173449297 -0.239802905 S(ph)SPLKITLFLEEDK ddPTM_HeLa_A486_30min_R1 2 SSPLKITLFLEEDK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.707)S(0.293)PLKITLFLEEDK;S(0.779)S(0.221)PLKITLFLEEDK ; 200.39 4.14E-22 519252000 410394 298796 114233 386445 269396 426421 682830 581539 224027 749780 TRUE FALSE FALSE 381627.4999 275118.3168 158467.0769 899663.4898 235605.8417 373813.5126 511978.7118 449135.2646 243445.8407 562030.2078 0.679015993 0.48950806 0.281954732 1.600738675 0.419204944 0.665112849 0.910945185 0.799130115 0.43315437 1 19.10028815 S(ph)SPLKITLFLEEDKSLK ddPTM_HeLa_A485_30min_R1 1 SSPLKITLFLEEDKSLK 17 2 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.499)S(0.499)PLKIT(0.003)LFLEEDKSLK 57.009 0.014396 37783000 31940 33512 20201 38820 89063 74823 161590 224180 35398 66543 TRUE FALSE FALSE 39044.94281 37430.93688 27674.19053 40940.6383 80195.575 78740.61658 127064.9764 169199.5035 42502.05391 49955.05473 0.781601442 0.749292281 0.553981788 0.819549463 1.605354562 1.576229212 2.543585972 3.387034694 0.850805872 1 15.60834304 -5.967914356 1.698157107 2.093246189 0.681326001 0.364705273 0.697031928 0.344193235 2.022156662 0.264042847 0.299258764 1.08E-06 5.967914356 -1.411920188 S(ph)SPLKLEFDFTEDTGNIEAR ddPTM_HeLa_A486_30min_R1 1 SSPLKLEFDFTEDTGNIEAR 20 1 O75410-2;H0YAY0;O75410;O75410-9;O75410-7;O75410-3;E7ET87;E7EVI4;R4GMT7;E5RFM9 O75410-2 TACC1 Transforming acidic coiled-coil-containing protein 1 1 0 S(0.5)S(0.5)PLKLEFDFTEDTGNIEAR 123.85 3.56E-07 94852000 88470 79722 32984 35330 50510 72413 78453 73029 56021 114770 TRUE FALSE FALSE 82268.70986 73404.53838 45756.28814 82250.02548 44174.56481 63479.4203 58823.22961 56401.89091 60876.94539 86030.84497 0.956269927 0.853235121 0.531859104 0.956052745 0.513473567 0.737868149 0.683745808 0.655600801 0.707617662 1 16.39256639 -4.533717628 24.81455884 0.709682934 0.93051129 0.202373925 0.148378335 214.410228 490871.382 0.034427459 0.091278725 2.93E-05 4.533717628 0.220828356 S(ph)SPLLR ddPTM_HeLa_A485_30min_R1 2 SSPLLR 6 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 S(0.854)S(0.146)PLLR;S(0.843)S(0.157)PLLR ; 106.14 0.010052 954050000 148824 185722 208700 207700 256110 257420 279760 304350 221300 272650 TRUE FALSE FALSE 181929.3854 207440.5723 285906.8147 219046.1251 230610.7891 270898.1132 219986.9906 229707.6853 265712.8801 204683.3728 0.88883324 1.01347056 1.396824817 1.070170587 1.126670848 1.323498384 1.074767274 1.122258649 1.298165437 1 17.64303439 -4.532857019 24.82389425 1.17882433 0.919992483 0.379085504 0.120083014 149.986389 373135.6096 0.029036615 0.077017343 2.93E-05 4.532857019 -0.258831847 S(ph)SPLLR ddPTM_HeLa_A486_30min_R1 2 SSPLLR 6 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 S(0.897)S(0.103)PLLR;S(0.864)S(0.136)PLLR ; 113.14 0.0082422 890020000 224890 235920 205960 74388 278100 227860 278680 265700 215710 269110 TRUE FALSE FALSE 209126.3723 217224.84 285713.2278 173179.0234 243218.1048 199748.9499 208951.3164 205205.9102 234407.9165 201723.1044 1.036700149 1.076846604 1.416363429 0.858498702 1.205702765 0.990213543 1.035832346 1.01726528 1.162028104 1 17.62201681 -5.281615043 24.99928485 1.044068197 1.166657805 0.191108602 0.12938812 1424.395117 1764937.792 0.035322866 0.052462007 5.23E-06 5.281615043 0.122589608 S(ph)SPLPAK ddPTM_HeLa_A485_30min_R1 1 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 S(0.681)S(0.319)PLPAK 133.86 0.0016216 2496900000 6543200 5822200 4735900 8112500 5546400 4997500 6529100 5559100 4510200 8193100 TRUE FALSE FALSE 7998712.266 6503055.644 6487906.487 8555665.333 4994180.941 5259161.372 5134104.447 4195722.009 5415355.77 6150710.953 1.300453285 1.057285197 1.054822205 1.391004292 0.811968076 0.855049345 0.834717236 0.682152363 0.880443873 1 22.55232175 -5.783059189 24.9999241 0.828245461 1.180200162 0.676923255 0.120133168 136.8314388 158223.3472 0.036605138 0.041541876 1.65E-06 5.783059189 0.351954701 S(ph)SPLPAK ddPTM_HeLa_A486_30min_R1 3 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 S(0.658)S(0.342)PLPAK;S(0.892)S(0.108)PLPAK;S(0.865)S(0.135)PLPAK ;; 134.48 0.0016118 4821940000 4521700 4729900 2442980 1462940 3503800 4566100 4712800 4471500 3697400 5556800 TRUE FALSE FALSE 4204752.18 4355085.498 3388967.281 3405798.253 3064320.732 4002781.007 3533607.593 3453437.062 4017893.609 4165341.111 1.009461667 1.045553145 0.813610984 0.817651703 0.735671017 0.960973159 0.848335706 0.829088656 0.964601338 1 21.99000322 -4.755310311 24.99920528 0.860768494 1.027507475 0.382149516 0.078580798 134.1441668 547131.4511 0.019715484 0.049433329 1.76E-05 4.755310311 0.16673898 S(ph)SPLSWR ddPTM_HeLa_A485_30min_R1 1 SSPLSWR 7 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.992)S(0.008)PLSWR 185.72 0.0005243 631100000 125160 157440 145990 132250 150830 145160 182300 154460 127120 188190 TRUE FALSE FALSE 153001.4102 175851.2385 199997.7762 139474.4826 135812.8356 152760.3531 143350.1157 116578.4428 152631.818 141277.6964 1.082983472 1.244720455 1.415635881 0.987236388 0.961318305 1.081277208 1.014669119 0.825172308 1.080367403 1 17.1081742 -5.288556597 24.50060584 0.988856592 1.247473974 0.575432435 0.100301012 386.5082382 349212.1291 0.028516322 0.042309987 5.15E-06 5.288556597 0.258617383 S(ph)SPLSWR ddPTM_HeLa_A486_30min_R1 1 SSPLSWR 7 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.747)S(0.253)PLSWR 171.75 0.00056172 265190000 383910 393380 274750 119150 377180 341650 372410 382110 351410 447640 TRUE FALSE FALSE 356999.8915 362207.1361 381140.5581 277387.2215 329870.5673 299500.6966 279229.079 295111.8944 381870.5017 335548.0304 1.063930821 1.079449448 1.135874818 0.826669199 0.983080029 0.892571762 0.832158302 0.879492257 1.138050196 1 18.35615976 -5.249129215 24.94240777 0.926806981 1.091721479 0.395101167 0.088553208 725.4793812 1469937.357 0.023921851 0.041049361 5.63E-06 5.249129215 0.164914498 S(ph)SPNPFITGLTR ddPTM_HeLa_A485_30min_R1 2 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 S(0.586)S(0.414)PNPFITGLTR;S(0.986)S(0.014)PNPFITGLTR ; 168.89 1.71E-10 225755000 261194 317660 299990 300180 397420 290530 381910 382480 284330 405170 TRUE FALSE FALSE 319295.7042 354807.5737 410968.7846 316578.0733 357851.4694 305741.7016 300311.8086 288676.1803 341392.423 304168.5756 1.049732713 1.166483333 1.351121771 1.040798093 1.176490598 1.005171888 0.987320298 0.949066417 1.122379004 1 18.21451159 -6.26416881 24.58200463 1.008012463 1.161793488 0.391592502 0.089630062 197.8252011 1781660.505 0.031080652 0.028668352 5.44E-07 6.26416881 0.153781025 S(ph)SPNPFITGLTR ddPTM_HeLa_A486_30min_R1 2 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 S(0.577)S(0.423)PNPFITGLTR;S(0.632)S(0.368)PNPFITGLTR ; 207.97 2.43E-17 229104000 280124 323265 264786 109360 325640 264069 305445 307074 231283 317631 TRUE FALSE FALSE 260488.7542 297648.3041 367318.2304 254595.6067 284795.1947 231490.8516 229019.4303 237159.9536 251330.7967 238094.1302 1.094057858 1.250128694 1.542743747 1.069306524 1.196145384 0.972266101 0.961886083 0.99607644 1.055594258 1 17.86117253 -5.894485988 1.686343729 0.99661482 1.278212477 0.481069149 0.121619739 0.309859614 1.812352244 0.046182657 0.055456028 1.28E-06 5.894485988 0.281597657 S(ph)SPNPFVGSPPK ddPTM_HeLa_A485_30min_R1 1 SSPNPFVGSPPK 12 0 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 S(0.662)S(0.338)PNPFVGSPPK 147.18 1.69E-07 622260000 331530 290820 215790 470500 434620 369340 519510 499850 338380 691650 TRUE FALSE FALSE 405277.7047 324828.8692 295619.7008 496202.2236 391347.7068 388678.0713 408512.4445 377261.0038 406289.7622 519234.3839 0.780529405 0.625591986 0.569337682 0.955642074 0.753701448 0.748559963 0.786759231 0.72657169 0.782478539 1 18.9860264 -14 0.172639019 1.992476295 0.688324794 0.399028899 0.095436158 142.7896712 1.353988785 48.61139967 0.34576789 1.00E-14 14 -1.304151501 S(ph)SPPLPPPAEER ddPTM_HeLa_A485_30min_R1 1 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.592)S(0.408)PPLPPPAEER 117.2 0.00021787 408220000 139060 184910 198390 177910 215940 168650 228000 246410 170740 234200 TRUE FALSE FALSE 169993.4172 206533.616 271782.7167 187628.7728 194440.2554 177480.2532 179285.9374 185977.5611 205005.9519 175818.2501 0.966870146 1.174699531 1.545816299 1.067174612 1.105916225 1.009452961 1.019723136 1.057783029 1.166010649 1 17.42372531 -5.465963274 24.99998785 1.060758168 1.23748741 0.234649516 0.139059902 403.9658058 177440.3919 0.040041162 0.059390443 3.42E-06 5.465963274 0.176729242 S(ph)SPPLPPPAEER ddPTM_HeLa_A486_30min_R1 1 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.624)S(0.376)PPLPPPAEER 143.55 2.17E-07 880320000 446410 423050 367660 106070 514190 353700 469910 450550 397490 338580 TRUE FALSE FALSE 415118.9643 389525.9773 510027.7983 246936.3205 449695.4956 310064.0902 352333.5478 347969.6004 431944.7532 253797.3642 1.635631503 1.534791263 2.009586663 0.97296645 1.771868266 1.22169941 1.388247466 1.371052854 1.701927656 1 17.95331756 -12.45708413 0.101137907 1.39E-13 1.840962839 0.233467539 0.278645926 188.4490828 1.822365162 47.52476696 4.916266061 3.49E-13 12.45708413 1.840962839 S(ph)SPPLRTPDVLESSGPAVR ddPTM_HeLa_A485_30min_R1 2 SSPPLRTPDVLESSGPAVR 19 1 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 S(0.583)S(0.417)PPLRTPDVLESSGPAVR;S(0.567)S(0.432)PPLRTPDVLESSGPAVR ; 235.76 8.85E-46 2913200000 183171 265220 248856 195640 357740 269127 377460 435530 222076 235575 TRUE FALSE FALSE 223916.757 296235.1719 340918.1902 206327.3178 322122.1495 283218.0736 296812.5874 328715.5846 266644.6162 176850.4879 1.26613593 1.675059964 1.927719817 1.166676554 1.82143772 1.601454861 1.678324956 1.858720258 1.507740348 1 17.43217067 -8.026083352 23.43795961 0.999999992 1.631991408 0.396441722 0.230228906 1130.454339 1015802.635 0.213584148 0.05514719 9.42E-09 8.026083352 0.631991416 S(ph)SPPPGYIPDELHQVAR ddPTM_HeLa_A485_30min_R1 2 SSPPPGYIPDELHQVAR 17 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 S(0.5)S(0.5)PPPGYIPDELHQVAR;S(0.5)S(0.5)PPPGYIPDELHQVAR ; 137.69 3.25E-06 236440000 116364 128174 122125 132305 136756 96246 115474 112586 107145 152189 TRUE FALSE FALSE 142248.7703 143162.8343 167304.1195 139532.4871 123140.0925 101285.2917 90802.03656 84974.10697 128648.0187 114251.0831 1.24505402 1.253054504 1.464354779 1.221279338 1.077802408 0.886514937 0.79475865 0.743748809 1.126011371 1 16.80184832 -5.911238738 2.157344259 0.887423054 1.315074348 0.71178573 0.11579786 0.161240815 1.52877702 0.041090528 0.047733769 1.23E-06 5.911238738 0.427651295 S(ph)SPPVLQGPAPAGFSQHPGLLVPHTHAR ddPTM_HeLa_A485_30min_R1 3 SSPPVLQGPAPAGFSQHPGLLVPHTHAR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR;S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR;S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR ;; 166.32 4.60E-14 4525980000 353096.4 483364 503944.2 230740 684360 431297 465824 433055 459884 478660 TRUE FALSE FALSE 431641.476 539889.2151 690374.1304 243344.7419 616222.7155 453879.044 366296.897 326847.5822 552178.5005 359338.8711 1.201210085 1.50245147 1.921234205 0.677201276 1.714879088 1.263094757 1.01936341 0.909580367 1.536651181 1 18.45498548 -6.52375323 21.0795941 1.113486804 1.406489414 0.133772061 0.344334182 8.48036858 204293.1091 0.127200654 0.099832948 2.99E-07 6.52375323 0.29300261 S(ph)SPPVLQGPAPAGFSQHPGLLVPHTHAR ddPTM_HeLa_A486_30min_R1 2 SSPPVLQGPAPAGFSQHPGLLVPHTHAR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR;S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR ; 129.57 3.61E-06 4345700000 238912 304380 204982 30449 261030 211580 209572 231282 229050 130011 TRUE FALSE FALSE 222165.5025 280259.8203 284356.52 70886.81081 228289.1834 185477.4108 157134.869 178624.1375 248904.2384 97455.39937 2.279663353 2.875775196 2.917811859 0.727376946 2.34249908 1.903203024 1.612377251 1.832880873 2.554032306 1 16.5724545 -1 0.061006751 3.55E-11 6.27776996 0.244837871 0.609462625 502.8145182 2.294353028 47.15432576 279.4516115 0.1 1 6.27776996 S(ph)SPQHSLSNPLPR ddPTM_HeLa_A485_30min_R1 2 SSPQHSLSNPLPR 13 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 S(0.98)S(0.02)PQHSLSNPLPR;S(0.766)S(0.193)PQHS(0.02)LS(0.02)NPLPR ; 174.37 2.22E-12 345107000 213630 274460 271830 233120 351500 243690 323080 324830 221784 315570 TRUE FALSE FALSE 261151.2565 306555.7095 372391.2288 245854.7553 316503.4258 256449.2316 254051.3187 245164.9332 266294.0145 236904.2066 1.102349596 1.294007033 1.571906359 1.037781299 1.335997492 1.082501806 1.072379939 1.03486948 1.124057771 1 17.85394429 -6.319046436 6.779911885 1.064332465 1.273729973 0.360768675 0.136804676 0.286372154 28.09838374 0.048414499 0.042783932 4.80E-07 6.319046436 0.209397508 S(ph)SPQKEVK ddPTM_HeLa_A485_30min_R1 1 SSPQKEVK 8 1 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 S(0.891)S(0.109)PQKEVK 85.355 0.0024676 306230000 849790 548610 181000 1241300 381290 984880 967530 1465400 528730 1523800 TRUE FALSE FALSE 1038822.854 612765.1672 247959.432 1309109.076 343327.4288 1036446.794 760809.3115 1106008.352 634841.2612 1143944.703 0.908105829 0.535659779 0.216758233 1.14438143 0.300125896 0.906028754 0.665075252 0.966837251 0.554957997 1 20.12558589 S(ph)SPQLAK ddPTM_HeLa_A486_30min_R1 1 SSPQLAK 7 0 Q13370-2;Q13370 Q13370-2 PDE3B "cGMP-inhibited 3,5-cyclic phosphodiesterase B" 1 0 S(0.887)S(0.113)PQLAK 66.546 0.024937 494250000 3214500 3096400 1586700 1005900 2671700 2747800 2835100 3257900 2188000 3360200 TRUE FALSE FALSE 2989180.15 2851029.987 2201112.733 2341786.035 2336590.473 2408804.374 2125727.993 2516147.289 2377657.602 2518784.049 1.186755233 1.131907274 0.873879098 0.929728786 0.92766606 0.956336203 0.843950078 0.998953162 0.943970406 1 21.26429601 -4.675455769 5.467235922 0.93170069 1.170896749 0.789261059 0.04669677 0.078910848 3.771710157 0.011581867 0.031702849 2.11E-05 4.675455769 0.239196059 S(ph)SPQLDPLR ddPTM_HeLa_A485_30min_R1 3 SSPQLDPLR 9 0 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.632)S(0.368)PQLDPLR;S(0.737)S(0.263)PQLDPLR;S(0.654)S(0.346)PQLDPLR ;; 136.5 0.00017596 1449502000 1225130 1261629 1272224 1416130 1515910 1148876 1473080 1359930 1231507 1811330 TRUE FALSE FALSE 1497655.942 1409165.537 1742872.599 1493489.596 1364980.678 1209029.371 1158344.424 1026405.035 1478659.159 1359798.766 1.101380571 1.036304468 1.28171362 1.098316628 1.003810793 0.889123745 0.851849886 0.754821273 1.087410281 1 20.37496173 -5.930867079 2.514018365 0.898173941 1.13611108 0.492539241 0.101129825 0.225937344 2.899253275 0.034597353 0.039402288 1.17E-06 5.930867079 0.237937139 S(ph)SPQLDPLR ddPTM_HeLa_A486_30min_R1 1 SSPQLDPLR 9 0 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.537)S(0.463)PQLDPLR 82.171 0.0067505 235360000 413450 451090 290970 171790 375570 416000 412660 443360 363920 454690 TRUE FALSE FALSE 384469.2901 415343.9856 403641.3764 399935.8018 328462.5085 364678.1496 309408.1033 342416.6065 395464.8786 340832.6645 1.128029471 1.218615552 1.184280201 1.173408078 0.963706073 1.069962441 0.907800618 1.004647272 1.160290429 1 18.37870408 -5.748575668 24.70176545 1.015081548 1.179706904 0.583840097 0.065442747 138.739159 266414.8591 0.019337127 0.024792996 1.78E-06 5.748575668 0.164625356 S(ph)SPQLDPLRK ddPTM_HeLa_A485_30min_R1 4 SSPQLDPLRK 10 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.5)S(0.5)PQLDPLRK;S(0.885)S(0.115)PQLDPLRK;S(0.5)S(0.5)PQLDPLRK;S(0.5)S(0.5)PQLDPLRK ;;; 106.54 0.00053687 19694600000 3500760 3046560 2268420 4203510 3311470 2733940 3849480 2863780 2826780 4977480 TRUE FALSE FALSE 4279491.985 3402828.69 3107602.955 4433137.107 2981768.42 2877084.871 3027007.151 2161433.465 3394088.817 3736685.84 1.145264057 0.91065421 0.831646836 1.186382077 0.797971397 0.769956318 0.810078043 0.578435961 0.908315273 1 21.83332784 -5.897231025 12.11076089 0.786499124 0.997367576 0.332812371 0.140401736 0.523428289 58.13030353 0.042219327 0.047882249 1.27E-06 5.897231025 0.210868452 S(ph)SPQLDPLRK ddPTM_HeLa_A486_30min_R1 4 SSPQLDPLRK 10 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.5)S(0.5)PQLDPLRK;S(0.634)S(0.366)PQLDPLRK;S(0.637)S(0.363)PQLDPLRK;S(0.874)S(0.126)PQLDPLRK ;;; 158.11 7.12E-07 7048080000 2685870 2612690 1273390 937151 1873630 2429370 2611180 2403530 2136360 3076130 TRUE FALSE FALSE 2497604.383 2405650.929 1766480.711 2181734.889 1638621.854 2129659.029 1957835.146 1856298.688 2321541.405 2305847.026 1.083161352 1.043282968 0.766087555 0.946175034 0.710637712 0.92359077 0.849074168 0.805039826 1.00680634 1 21.13686537 -4.650549957 6.728998371 0.866654908 1.072064913 0.394354053 0.092666588 0.178389789 9.715921888 0.021938025 0.059032504 2.24E-05 4.650549957 0.205410005 S(ph)SPRPTAEK ddPTM_HeLa_A486_30min_R1 4 SSPRPTAEK 9 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.5)S(0.5)PRPT(0.001)AEK;S(0.5)S(0.5)PRPTAEK;S(0.499)S(0.499)PRPT(0.002)AEK;S(0.5)S(0.5)PRPTAEK ;;; 53.967 0.0085643 1550250000 2236920 1239410 1284680 1026760 1209740 2958790 2270670 1713220 2139690 2825650 TRUE FALSE FALSE 2080123.459 1141194.638 1782142.501 2390349.17 1058003.129 2593764.573 1702524.349 1323157.205 2325160.052 2118088.848 0.982075639 0.538785065 0.841391759 1.128540558 0.49950838 1.224577796 0.80380214 0.624693911 1.097763228 1 21.01433168 -13.99999819 0.061676788 1.575918247 0.614615067 0.044998571 0.236581219 1404.078935 6.298085853 119.5797044 18.94195963 1.00E-14 13.99999819 -0.96130318 S(ph)SPSHTTNGCQGEK ddPTM_HeLa_A485_30min_R1 1 SSPSHTTNGCQGEK 14 0 Q8N8R5 Q8N8R5 C2orf69 UPF0565 protein C2orf69 1 0 S(0.665)S(0.335)PSHTTNGCQGEK 151.56 6.71E-07 0 27017 30186 19759 18594 34152 26902 32148 40263 29251 33760 TRUE FALSE FALSE 33026.83844 33715.99012 27068.67634 19609.74314 30751.70697 28310.54712 25279.31717 30388.43612 35121.40739 25344.25331 1.303129275 1.33032091 1.068040002 0.773735288 1.213360149 1.117040095 0.997437836 1.199026689 1.385774004 1 14.62937104 -4.759905411 24.98835176 1.091565783 1.316725173 0.253618251 0.152568965 54.58990083 889188.2972 0.041070858 0.097458723 1.74E-05 4.759905411 0.22515939 S(ph)SPSIICMPK ddPTM_HeLa_A486_30min_R1 1 SSPSIICMPK 10 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 S(0.649)S(0.351)PSIICMPK 193.52 3.30E-10 207100000 357130 407870 190720 125960 323190 393250 434610 369350 331540 428120 TRUE FALSE FALSE 332097.0312 375548.8958 264571.8917 293241.2457 282652.4966 344734.8133 325865.9812 285257.0679 360278.1541 320915.9654 1.034841102 1.170240612 0.824427327 0.913763344 0.880767949 1.074221449 1.015424648 0.888884003 1.122655751 1 18.29183604 -8.911814072 14.62468157 0.999992713 0.98657082 0 0.107437098 0 0 0.105490993 0.025585324 1.23E-09 8.911814072 -0.013421893 S(ph)SPSILAVQR ddPTM_HeLa_A486_30min_R1 1 SSPSILAVQR 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.749)S(0.251)PSILAVQR 230.05 1.72E-17 572580000 310340 322710 253760 138060 349400 361880 379510 380480 315910 367470 TRUE FALSE FALSE 288586.7686 297137.2843 352022.6679 321410.6572 305574.994 317234.9249 284552.584 293853.0098 343293.3332 275453.1202 1.047680158 1.078721795 1.277976694 1.166843407 1.109353903 1.151683904 1.033034528 1.066798625 1.246285876 1 18.07144728 S(ph)SPSKCPSLDDR ddPTM_HeLa_A485_30min_R1 1 SSPSKCPSLDDR 12 1 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 S(0.85)S(0.149)PS(0.001)KCPSLDDR 93.478 0.00087271 585140000 479540 514160 431610 677420 626100 490680 663450 616410 490750 867650 TRUE FALSE FALSE 586212.0186 574286.5394 591280.4998 714425.7393 563763.2856 516371.2461 521698.4876 465234.481 589239.0236 651360.8229 0.899980469 0.881671908 0.907761841 1.096820248 0.86551611 0.792757605 0.800936239 0.71425002 0.90462767 1 19.31309742 -5.989323323 24.99406895 0.822843014 0.9444046 0.216529986 0.090406261 281.4770581 658932.3586 0.027748312 0.031434888 1.02E-06 5.989323323 0.121561586 S(ph)SPSKHQPPPIR ddPTM_HeLa_A485_30min_R1 1 SSPSKHQPPPIR 12 1 E9PD68;Q14194;Q14194-2 E9PD68 CRMP1 Dihydropyrimidinase-related protein 1 1 0 S(0.5)S(0.5)PSKHQPPPIR 87.083 0.001488 132610000 20809 57232 36985 11000 72402 60302 75711 161630 29509 20784 TRUE FALSE FALSE 25437.89026 63924.78455 50667.29057 11600.90215 65193.40266 63459.31948 59534.72635 121989.9891 35431.18563 15602.9313 1.630327646 4.096972762 3.247293063 0.743507865 4.178279158 4.067140863 3.815611644 7.818401986 2.270803155 1 13.92952947 -5.932664849 24.99955414 4.210886627 2.588763387 0.105706084 1.851937175 103.2753322 38341.56715 0.558267856 0.633018566 1.17E-06 5.932664849 -1.622123239 S(ph)SPSPALEQPFR ddPTM_HeLa_A486_30min_R1 1 SSPSPALEQPFR 12 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.587)S(0.411)PS(0.001)PALEQPFR 96.82 0.0014314 285540000 161150 176600 122090 57345 162480 170860 188480 154840 132080 235740 TRUE FALSE FALSE 149854.2172 162605.5728 169366.5177 133502.0581 142100.2433 149781.0304 141320.3105 119586.3121 143528.8007 176709.1696 0.848027397 0.920187522 0.958447816 0.755490269 0.804147536 0.847613232 0.799733884 0.676740842 0.812231765 1 17.43101738 -5.262472231 24.99723563 0.800671169 0.910017574 0.213272686 0.081101107 120.1218372 2907235.681 0.021827341 0.034583144 5.46E-06 5.262472231 0.109346404 S(ph)SPSVLIHSLGK ddPTM_HeLa_A485_30min_R1 2 SSPSVLIHSLGK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 S(0.5)S(0.5)PSVLIHSLGK;S(0.5)S(0.5)PSVLIHSLGK ; 218.11 4.84E-23 1567160000 1262680 1300160 1188330 991950 1570780 1120170 1455890 1198630 1238690 1545810 TRUE FALSE FALSE 1543558.81 1452202.402 1627942.718 1046137.717 1414387.628 1178820.369 1144827.208 904664.1131 1487283.721 1160468.016 1.330117495 1.251393733 1.402832905 0.901479147 1.218807937 1.015814614 0.986521983 0.77956833 1.281624053 1 20.14627533 -5.256836961 24.97723008 1.023006709 1.320442622 0.497760184 0.138857467 319.2508184 1732561.921 0.036989891 0.061459834 5.54E-06 5.256836961 0.297435912 S(ph)SPSVLIHSLGK ddPTM_HeLa_A486_30min_R1 4 SSPSVLIHSLGK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 S(0.5)S(0.5)PSVLIHSLGK;S(0.5)S(0.5)PSVLIHSLGK;S(0.5)S(0.5)PSVLIHSLGK;S(0.499)S(0.499)PS(0.001)VLIHSLGK ;;; 264.29 9.48E-34 2516835000 2743370 3272690 2027097 363523 2840390 2910520 2813311 2823612 2870880 2010815 TRUE FALSE FALSE 2551073.93 3013350.125 2812043.246 846299.9154 2484121.801 2551449.634 2109390.832 2180737.187 3119730.19 1507293.836 1.692486143 1.999178962 1.865623795 0.561469765 1.648067379 1.6927354 1.399455621 1.446789693 2.069755821 1 20.52352926 -5.085118194 24.99982219 1.42572929 1.86775481 0.217488307 0.38894899 123.8978544 36387.32546 0.104950722 0.181780072 8.22E-06 5.085118194 0.44202552 S(ph)SPVEFECINEK ddPTM_HeLa_A485_30min_R1 1 SSPVEFECINEK 12 0 H0YB26;O75131 H0YB26 CPNE3 Copine-3 1 0 S(0.5)S(0.5)PVEFECINEK 98.902 0.0012025 96090000 104190 100820 76889 159440 125020 109070 157590 139290 119520 225160 TRUE FALSE FALSE 127366.706 112610.022 105333.4407 168149.8035 112572.5698 114780.7365 123919.6091 105128.9091 143506.5677 169031.7558 0.753507561 0.666206308 0.623157703 0.994782328 0.665984739 0.67904836 0.73311437 0.621947684 0.848991759 1 17.36693478 -8.010568978 6.078794956 0.999912445 0.719641137 0.436496064 0.10164935 0.120993901 22.81473114 0.097657873 0.02534166 9.76E-09 8.010568978 -0.280271309 S(ph)SPVEFECINEK ddPTM_HeLa_A486_30min_R1 2 SSPVEFECINEK 12 0 H0YB26;O75131 H0YB26 CPNE3 Copine-3 1 0 S(0.5)S(0.5)PVEFECINEK;S(0.5)S(0.5)PVEFECINEK ; 115.14 0.00027897 361114000 321174 336920 200414 152057 307957 393180 423830 419430 290596 484490 TRUE FALSE FALSE 298661.3611 310221.2322 278019.6681 353996.3805 269330.1615 344673.4492 317783.2512 323934.9451 315785.0953 363170.5505 0.822372191 0.85420261 0.765534727 0.974738673 0.741607934 0.949067728 0.875024835 0.891963692 0.869522859 1 18.47028769 -14 0.101992433 1.450269953 0.768749323 0.331732672 0.065577361 206.4766005 1.424005119 19.6161262 0.977057132 1.00E-14 14 -0.681520629 S(ph)SPVESLKK ddPTM_HeLa_A485_30min_R1 1 SSPVESLKK 9 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.692)S(0.308)PVESLKK 147.62 5.07E-05 3104500000 2517100 1789100 1093400 3468900 2363400 2255400 3744600 3304400 1821600 4372000 TRUE FALSE FALSE 3077020.211 1998319.682 1497894.16 3658397.223 2128091.598 2373489.256 2944535.619 2493990.719 2187178.411 3282140.861 0.937504008 0.608846411 0.456377171 1.114637482 0.648385212 0.72315277 0.89713871 0.759867058 0.666387734 1 21.64620573 -11.03669016 2.488881022 1.303305965 0.754273368 0.144811392 0.177108267 22242638.59 7897228.243 38459958.83 0.043276733 9.19E-12 11.03669016 -0.549032597 S(ph)SPVESLKK ddPTM_HeLa_A486_30min_R1 1 SSPVESLKK 9 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.908)S(0.092)PVESLKK 145.91 5.66E-05 806580000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)SPVGGGPR ddPTM_HeLa_A485_30min_R1 3 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.698)S(0.302)PVGGGPR;S(0.976)S(0.024)PVGGGPR;S(0.591)S(0.409)PVGGGPR ;; 187.5 2.15E-08 4893110000 1865990 2012650 1768390 2018300 2425450 1758930 2233950 2130980 1839720 2639620 TRUE FALSE FALSE 2281073.038 2248011.91 2422591.05 2128554.618 2183963.682 1851024.855 1756648.333 1608353.814 2208934.929 1981611.313 1.151120315 1.134436353 1.222535941 1.074153445 1.102115066 0.934100872 0.88647472 0.811639398 1.114716552 1 20.91824258 -6.097757787 2.079342313 0.931557261 1.153199337 0.568342225 0.081433824 0.222331432 1.902623741 0.030189144 0.030982388 7.98E-07 6.097757787 0.221642076 S(ph)SPVGGGPR ddPTM_HeLa_A486_30min_R1 4 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.894)S(0.106)PVGGGPR;S(0.589)S(0.411)PVGGGPR;S(0.618)S(0.382)PVGGGPR;S(0.639)S(0.361)PVGGGPR ;;; 185.6 2.56E-08 5005330000 1131291 1360563 1060210 446609 1313024 1235034 1253976 1272434 1136105 1254141 TRUE FALSE FALSE 1051993.343 1252747.033 1470751.705 1039728.322 1148332.286 1082668.062 940217.9416 982728.5552 1234583.496 940095.9305 1.119027653 1.332573615 1.564469814 1.10598109 1.221505433 1.151657003 1.000129786 1.045349228 1.313252676 1 19.84244846 -5.336174218 24.9986726 1.122177468 1.338083866 0.355507326 0.13509235 142.696901 47731.10037 0.038517357 0.057130465 4.61E-06 5.336174218 0.215906398 S(ph)SPVKKPSLLK ddPTM_HeLa_A486_30min_R1 1 SSPVKKPSLLK 11 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 S(0.907)S(0.093)PVKKPSLLK 98.676 0.00070576 1716700000 2934600 2701800 868520 1360600 1845000 3593600 4012400 3691800 2330000 4707800 TRUE FALSE FALSE 2728899.694 2487699.528 1204834.204 3167545.561 1613582.896 3150258.169 3008455.081 2851257.731 2531966.276 3528936.237 0.773292435 0.704943179 0.341415691 0.897592177 0.457243426 0.892693423 0.852510467 0.807965217 0.717487114 1 21.75080193 -6.287238237 24.97551013 0.842027787 0.637078406 0.318840456 0.159714482 984.9043217 953468.5514 0.054180091 0.047797892 5.16E-07 6.287238237 -0.204949381 S(ph)SPVKVGEK ddPTM_HeLa_A485_30min_R1 2 SSPVKVGEK 9 1 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 S(0.519)S(0.481)PVKVGEK;S(0.979)S(0.021)PVKVGEK ; 120.03 0.00022361 624480000 774980 503440 315040 1301700 873450 720140 1301600 997610 569570 1807300 TRUE FALSE FALSE 947371.6274 562312.9287 431586.4059 1372808.575 786486.2511 757845.4169 1023502.527 752944.5833 683877.4746 1356773.371 0.698253406 0.414448677 0.318097639 1.011818631 0.579674003 0.558564483 0.754365135 0.554952359 0.504046946 1 20.37174833 -11.22130661 2.339826558 2.320481831 0.599252492 0.304259534 0.181751994 12269809.29 2180012.575 85863453.24 0.04626717 6.01E-12 11.22130661 -1.72122934 S(ph)SPVKVGEK ddPTM_HeLa_A486_30min_R1 2 SSPVKVGEK 9 1 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 S(0.736)S(0.264)PVKVGEK;S(0.5)S(0.5)PVKVGEK ; 130.56 0.00011649 2111800000 3601210 3228900 1348580 2332520 2866590 4556100 6157600 5542200 2895500 6979500 TRUE FALSE FALSE 3348783.776 2973030.205 1870786.292 5430224.439 2507035.552 3994014.705 4616903.352 4280362.045 3146484.271 5231787.771 0.640084025 0.568262769 0.357580692 1.037929036 0.4791929 0.763412982 0.882471452 0.818145199 0.601416649 1 22.31887259 -5.393383713 0.082840238 1.301836872 1.67E-13 0.263817543 0.181998688 75.45861892 1.553203132 7.939647863 16.91480194 4.04E-06 5.393383713 -1.301836872 S(ph)SPVLQHK ddPTM_HeLa_A485_30min_R1 7 SSPVLQHK 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 S(0.5)S(0.5)PVLQHK;S(0.5)S(0.5)PVLQHK;S(0.5)S(0.5)PVLQHK;S(0.681)S(0.319)PVLQHK;S(0.537)S(0.463)PVLQHK;S(0.5)S(0.5)PVLQHK;S(0.5)S(0.5)PVLQHK ;;;;;; 160.75 3.04E-05 7009460000 6098630 6165890 4559060 7477640 7213780 6448910 9406780 9156030 6016030 9973650 TRUE FALSE FALSE 7455249.203 6886937.199 6245646.012 7886124.539 6495550.734 6786564.956 7396944.607 6910499.286 7223392.039 7487402.606 0.995705667 0.919803243 0.83415389 1.05325237 0.867530581 0.906397761 0.987918641 0.92295014 0.964739365 1 22.8360339 -8.252316453 0.750650541 1.000482849 0.931141208 0.095579935 0.060480999 2.487990541 2.869197162 0.059369728 0.021581797 5.59E-09 8.252316453 -0.06934164 S(ph)SPVLQHK ddPTM_HeLa_A486_30min_R1 4 SSPVLQHK 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 S(0.5)S(0.5)PVLQHK;S(0.5)S(0.5)PVLQHK;S(0.5)S(0.5)PVLQHK;S(0.5)S(0.5)PVLQHK ;;; 141.95 0.0002917 5072870000 7043130 6307140 3893960 2716030 6038060 7203070 8491420 7236380 5788220 7849870 TRUE FALSE FALSE 6549442.958 5807339.256 5401805.596 6323055.101 5280710.212 6314428.459 6366776.903 5588814.243 6289947.57 5884211.458 1.113053636 0.986935853 0.918016906 1.074579856 0.897437193 1.07311379 1.082010215 0.949798335 1.068953353 1 22.48841766 S(ph)SPVNRPSSATNK ddPTM_HeLa_A485_30min_R1 1 SSPVNRPSSATNK 13 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR72;A0A0A0MR80 Q96L91-3 EP400 E1A-binding protein p400 1 0 S(0.5)S(0.5)PVNRPSSATNK 77.468 0.0032831 172850000 223710 233740 185460 292070 286940 234700 326680 316820 218070 376290 TRUE FALSE FALSE 273473.5177 261073.8597 254069.3716 308025.0445 258371.2461 246988.5291 256882.1493 239119.3982 261834.6487 282487.8281 0.968089562 0.924195076 0.899399359 1.090401121 0.91462789 0.87433335 0.909356523 0.846476819 0.92688825 1 18.10782918 -5.976697435 24.99830557 0.900886571 0.967179918 0.175703115 0.059885714 361.0199297 387289.5951 0.018310387 0.020760989 1.06E-06 5.976697435 0.066293347 S(ph)SPVPEMLEESQELLEPVVDDVPK ddPTM_HeLa_A486_30min_R1 1 SSPVPEMLEESQELLEPVVDDVPK 24 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.446)S(0.446)PVPEMLEES(0.108)QELLEPVVDDVPK 55.734 0.022 95281000 4992.9 4650.4 3352.4 2340.4 4341.1 4172.8 6966.6 6379.2 3038.3 7860.1 TRUE FALSE FALSE 4642.923493 4281.885368 4650.53906 5448.569477 3796.598759 3658.002362 5223.482995 4926.795417 3301.66229 5891.879799 0.788020742 0.726743503 0.789313295 0.924759103 0.644378176 0.620854886 0.886556273 0.836200938 0.560375025 1 12.52451228 -10.47771594 5.784464339 1.00023083 0.757659177 0.30602464 0.111379656 0.00033367 3.01E-05 0.108528769 0.026297295 3.33E-11 10.47771594 -0.242571654 S(ph)SPYGTLKPEEMSGPGLAEPK ddPTM_HeLa_A485_30min_R1 1 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 S(0.492)S(0.492)PY(0.012)GT(0.003)LKPEEMSGPGLAEPK 61.039 0.0089093 279260000 135400 90182 56362 235860 125370 121140 207790 179740 92589 254740 TRUE FALSE FALSE 165519.2629 100728.0004 77212.64922 248744.4346 112887.7226 127482.7031 163393.969 135658.4832 111170.763 191238.0061 0.865514477 0.526715387 0.403751591 1.300706066 0.590299621 0.666618031 0.854401132 0.709369889 0.581321492 1 17.54500974 -11.13115448 2.37854028 1.570409831 0.721998674 0.111705033 0.235118574 31246792.6 7090078.231 96395349.08 0.058149253 7.39E-12 11.13115448 -0.848411157 S(ph)SQASQNRHSMEISPPVLISSSNPTAAAR ddPTM_HeLa_A485_30min_R1 2 SSQASQNRHSMEISPPVLISSSNPTAAAR 29 1 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 S(0.536)S(0.369)QAS(0.048)QNRHS(0.048)MEISPPVLISSSNPTAAAR;S(0.368)S(0.239)QAS(0.156)QNRHS(0.156)MEIS(0.081)PPVLISSSNPTAAAR ; 188.49 6.88E-21 1202400000 364781 544610 514900 354874 758190 451670 626880 739330 524050 531770 TRUE FALSE FALSE 445925.275 608297.402 705382.9368 374259.868 682701.9414 475318.7428 492941.9669 558008.1583 629222.0281 399209.5255 1.117020628 1.523754728 1.766949163 0.937502349 1.710134398 1.190649803 1.234795102 1.397782675 1.576169876 1 18.60678662 S(ph)SQASQNRHSMEISPPVLISSSNPTAAAR ddPTM_HeLa_A486_30min_R1 3 SSQASQNRHSMEISPPVLISSSNPTAAAR 29 1 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 S(0.524)S(0.349)QAS(0.064)QNRHS(0.064)MEISPPVLISSSNPTAAAR;S(0.255)S(0.255)QAS(0.255)QNRHS(0.218)MEIS(0.015)PPVLISSSNPTAAAR;S(0.533)S(0.323)QAS(0.065)QNRHS(0.065)MEIS(0.013)PPVLISSSNPTAAAR ;; 198.99 9.88E-29 2083770000 464980 453110 384246 55326 553610 409724 486974 507330 409367 331926 TRUE FALSE FALSE 432387.3032 417203.9134 533036.3417 128801.724 484171.0716 359176.4186 365127.9545 391822.0339 444851.2612 248809.5691 1.737824251 1.676800112 2.142346629 0.517671907 1.945950364 1.443579602 1.467499646 1.574786835 1.787918619 1 17.92468245 -10.93323764 2.526596982 0.608193313 1.577993206 0.155379512 0.410832339 24169395.08 14558068.87 55977217.31 0.100271726 1.17E-11 10.93323764 0.969799894 S(ph)SQPLASK ddPTM_HeLa_A486_30min_R1 2 SSQPLASK 8 0 P17096-2;A0A669KAX1;A0A1W2PRV2;P17096;P17096-3 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 S(0.825)S(0.175)QPLASK;S(0.75)S(0.25)QPLASK ; 144.55 0.00034789 652770000 2096080 2025740 1162340 699950 1736180 2338700 2400400 2115300 2214900 3068300 TRUE FALSE FALSE 1949155.616 1865212.985 1612429.177 1629518.974 1518412.115 2050174.972 1799794.531 1633692.367 2406889.315 2299977.709 0.847467177 0.810970027 0.701062958 0.708493377 0.660185579 0.891389062 0.782526946 0.710307913 1.046483758 1 21.13318845 -7.765397725 24.99720166 1.02324203 0.763061228 0.6933545 0.068945429 60.14286384 379780.0052 0.061505151 0.018195441 1.72E-08 7.765397725 -0.260180802 S(ph)SRGQEEISGALPVASPASSR ddPTM_HeLa_A485_30min_R1 5 SSRGQEEISGALPVASPASSR 21 1 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 0 S(0.499)S(0.499)RGQEEIS(0.003)GALPVASPASSR;S(0.5)S(0.5)RGQEEISGALPVASPASSR;S(0.437)S(0.437)RGQEEIS(0.102)GALPVAS(0.023)PASSR;S(0.768)S(0.231)RGQEEISGALPVASPASSR;S(0.5)S(0.5)RGQEEISGALPVASPASSR ;;;; 256.06 1.18E-57 4097090000 1299800 1737260 1571550 1437220 2609850 1778240 2354200 2809410 1564940 2059060 TRUE FALSE FALSE 1588936.026 1940417.445 2152931.743 1515731.689 2350004.17 1871345.897 1851205.938 2120397.793 1879009.104 1545774.236 1.027922441 1.255304558 1.392785371 0.980564725 1.520276451 1.210620447 1.197591404 1.371738345 1.215577967 1 20.5598982 -4.261096837 21.95663744 1.253342331 1.027922373 0.131429015 0.158009204 9.360283449 598414.0231 0.036300301 0.205628105 5.48E-05 4.261096837 -0.225419958 S(ph)SRGQEEISGALPVASPASSR ddPTM_HeLa_A486_30min_R1 3 SSRGQEEISGALPVASPASSR 21 1 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 0 S(0.5)S(0.5)RGQEEISGALPVASPASSR;S(0.499)S(0.499)RGQEEIS(0.002)GALPVASPASSR;S(0.5)S(0.5)RGQEEISGALPVASPASSR ;; 166.42 6.67E-14 2077060000 1887730 2017190 1600660 698720 2446350 1911840 2320300 2372620 1596570 1810500 TRUE FALSE FALSE 1755409.875 1857340.518 2220478.419 1626655.471 2139505.972 1675976.619 1739736.398 1832426.22 1734961.973 1357139.016 1.293463569 1.368570571 1.636146624 1.198591635 1.576482547 1.234933636 1.281914659 1.350212616 1.278396651 1 20.37213708 -9.261549159 0.324606142 0.888130855 1.418569035 0.435972267 0.129478314 6.296340911 0.816749844 0.958154682 0.128621112 5.48E-10 9.261549159 0.530438181 S(ph)SRS(ph)S(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.5)S(0.5)RS(1)S(1)PELTR 155.14 7.57E-07 0 226840 307250 264680 314380 372270 287410 387620 373290 286930 429540 TRUE FALSE FALSE 277299.7754 343180.2148 362596.1463 331553.7833 335205.4917 302458.3432 304801.8204 281740.0422 344514.2191 322463.5831 0.85994137 1.064244872 1.12445611 1.028189851 1.039514256 0.937961243 0.94522866 0.873711194 1.068381787 1 18.29877672 -6.256774247 24.51318498 0.955924281 1.03144057 0.112350382 0.078103239 541.3835735 2844732.123 0.02622925 0.025407616 5.54E-07 6.256774247 0.075516289 S(ph)SRS(ph)S(ph)PELTR ddPTM_HeLa_A486_30min_R1 3 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.984)S(0.019)RS(0.999)S(0.997)PELTR;S(0.997)S(0.004)RS(0.999)S(0.998)PELT(0.003)R;S(0.789)S(0.211)RS(0.995)S(0.992)PELT(0.012)R ;; 145.52 5.09E-05 2095000000 1259290 1403550 1120940 661990 1610870 1520520 1725310 1694230 1307170 1735470 TRUE FALSE FALSE 1171020.274 1292327.586 1554997.988 1541146.175 1408819.664 1332933.702 1293619.19 1308490.814 1420476.548 1300897.016 0.900163702 0.993412676 1.195327508 1.184679614 1.082960178 1.024626612 0.994405532 1.005837355 1.091920829 1 20.31107533 -6.27034801 9.510317117 1.021880203 1.080182621 0.070434823 0.083979404 0.591486732 553.1303182 0.032096524 0.029449593 5.37E-07 6.27034801 0.058302418 S(ph)SRSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.5)S(0.5)RS(0.203)S(0.797)PELT(0.001)R 123.71 0.00051207 485710000 410640 487270 480130 504580 597990 461390 607240 573650 401570 544970 TRUE FALSE FALSE 501985.4513 544251.9878 657750.0669 532143.9277 538452.0159 485547.667 477498.2133 432961.4381 482161.4156 409119.0084 1.226991269 1.330302373 1.607723067 1.300706926 1.316125638 1.186812778 1.167137687 1.058277492 1.178535843 1 18.64216104 -6.375802066 1.257767335 1.0908532 1.383029311 0.599488545 0.10115628 0.324927879 1.04772135 0.054198552 0.044192459 4.21E-07 6.375802066 0.292176111 S(ph)SRSS(ph)PELTR ddPTM_HeLa_A486_30min_R1 2 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.713)S(0.287)RS(0.368)S(0.629)PELT(0.002)R;S(0.5)S(0.5)RS(0.322)S(0.678)PELTR ; 140.33 5.72E-05 622280000 1349260 1563500 1237010 555934 1724870 1420350 1673350 1667930 1286320 1567320 TRUE FALSE FALSE 1254683.842 1439602.566 1716013.4 1294242.447 1508520.721 1245121.658 1254660.131 1288178.75 1397819.253 1174852.87 1.06794976 1.225347107 1.46061983 1.101620875 1.284008201 1.059810713 1.067929579 1.096459635 1.189782388 1 20.16404867 -6.266787364 24.97631918 1.087896005 1.233679175 0.306619864 0.108801404 578.6502237 2702420.458 0.037964613 0.034469933 5.41E-07 6.266787364 0.14578317 S(ph)SRSSPELT(ph)R ddPTM_HeLa_A485_30min_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.408)S(0.408)RS(0.251)S(0.448)PELT(0.485)R 80.474 0.0069878 0 677910 873050 935380 790500 1205300 949190 1136200 1253700 907440 1075400 TRUE FALSE FALSE 828708.7407 975145.603 1281415.986 833683.0133 1085296.1 998888.1207 893441.5881 946228.1093 1089554.884 807322.5713 1.026490241 1.207876056 1.587241621 1.032651685 1.344315319 1.237285016 1.106672376 1.172057048 1.349590515 1 19.6227857 -6.560108755 18.91824815 1.171496531 1.250254588 0.049192471 0.169397798 49.63467345 25217.1042 0.064031111 0.049599069 2.75E-07 6.560108755 0.078758057 S(ph)SS(ph)PAPADIAQTVQEDLR ddPTM_HeLa_A485_30min_R1 1 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 2 0 S(0.768)S(0.242)S(0.99)PAPADIAQTVQEDLR 127.59 2.20E-05 74490000 147360 166670 159990 181220 183610 149670 194520 186420 153150 219280 TRUE FALSE FALSE 180139.7236 186160.6067 219176.9587 191119.5897 165329.1437 157506.4898 152959.2129 140700.2027 183885.8002 164617.5315 1.09429246 1.130867441 1.33143145 1.160991712 1.004322821 0.956802646 0.929179362 0.85470971 1.117048704 1 17.32875846 -5.789532928 3.610120688 0.962046142 1.190088933 0.582264534 0.084243999 0.157180752 4.310905828 0.027120301 0.032857184 1.62E-06 5.789532928 0.228042791 S(ph)SS(ph)PFLSK ddPTM_HeLa_A485_30min_R1 4 SSSPFLSK 8 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.999)S(0.003)S(0.997)PFLS(0.001)K;S(1)S(0.009)S(0.992)PFLSK;S(0.998)S(0.003)S(0.999)PFLSK;S(0.999)S(0.004)S(0.996)PFLSK ;;; 157.38 0.00019512 1059150000 3559560 2346530 1966830 6748000 3686190 2587310 4297700 2874010 2655650 8295000 TRUE FALSE FALSE 4351371.842 2620936.271 2694442.264 7116626.153 3319179.981 2722777.551 3379461.286 2169154.541 3188614.596 6227209.158 0.698767575 0.420884574 0.432688576 1.142827545 0.533012445 0.437238815 0.542692754 0.348334942 0.512045527 1 22.57015431 -10.0369666 4.765112893 1.00000983 0.560681115 0.272796012 0.213932455 298058306.5 0.92910254 37017.44014 0.053661698 9.18E-11 10.0369666 -0.439328715 S(ph)SS(ph)PFLSK ddPTM_HeLa_A486_30min_R1 4 SSSPFLSK 8 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.999)S(0.001)S(1)PFLSK;S(0.999)S(0.007)S(0.994)PFLSK;S(0.999)S(0.001)S(1)PFLSK;S(0.999)S(0.002)S(0.999)PFLSK ;;; 160.77 8.67E-05 1529590000 4383360 5102670 2208970 2394020 3892010 5752650 6609980 5791930 4415640 6875660 TRUE FALSE FALSE 4076109.1 4698315.846 3064342.342 5573399.547 3403837.814 5042946.532 4956093.091 4473233.976 4798391.231 5153949.983 0.790870907 0.911595157 0.594561909 1.081384097 0.660432838 0.978462451 0.96161063 0.867923436 0.931012378 1 22.29724711 -6.328259755 24.9999455 0.940410126 0.816890406 0.227306283 0.128180735 316.1785611 118292.6145 0.042393728 0.037387757 4.70E-07 6.328259755 -0.12351972 S(ph)SS(ph)PVTELAS(ph)RSPIRQDR ddPTM_HeLa_A485_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.915)S(0.401)S(0.665)PVT(0.042)ELAS(0.597)RS(0.38)PIRQDR 54.582 0.035863 1167500000 114570 185720 144020 161090 264380 208150 297980 344670 138700 228160 TRUE FALSE FALSE 140055.7012 207438.3385 197298.9912 169889.9388 238057.3989 219048.4121 234314.1387 260139.1421 166535.8178 171283.911 0.817681593 1.211078946 1.151882801 0.991861628 1.389840981 1.278861575 1.367986855 1.518759938 0.972279398 1 17.38603012 -3.549025307 0.799019364 1.260187517 2.03E-15 0.266144417 0.181093408 9.041436844 1.961383808 0.065357887 13.19617244 0.000282472 3.549025307 -1.260187517 S(ph)SS(ph)PVTELASR ddPTM_HeLa_A485_30min_R1 2 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.865)S(0.138)S(0.998)PVTELASR;S(0.999)S(0.001)S(0.847)PVT(0.153)ELASR ; 244.71 1.13E-21 4146800000 1541520 1477210 1216460 1962620 1722420 1262860 1629200 1444180 1262650 2357650 TRUE FALSE FALSE 1884425.806 1649956.859 1666479.175 2069832.961 1550929.817 1328981.397 1281108.111 1089992.591 1516052.273 1769931.244 1.064688706 0.932215229 0.941550233 1.16944258 0.876265574 0.750866115 0.72381801 0.615838945 0.856559981 1 20.75526189 -5.990058037 6.366061172 0.766238085 1.015966881 0.492713389 0.112274975 0.119201395 20.89475656 0.035056666 0.038522705 1.02E-06 5.990058037 0.249728796 S(ph)SS(ph)PVTELASR ddPTM_HeLa_A486_30min_R1 2 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)S(0.001)S(1)PVTELASR;S(1)S(0.001)S(1)PVTELASR ; 225.63 9.61E-18 5962000000 5306100 5461500 3029300 2077430 3969200 5287100 5730200 4946400 4433400 7171700 TRUE FALSE FALSE 4934169.791 5028710.85 4202326.087 4836362.027 3471345.925 4634831.357 4296443.352 3820212.699 4817690.682 5375859.64 0.917838285 0.935424506 0.781703089 0.899644401 0.645728527 0.862156319 0.799210478 0.710623594 0.896171218 1 22.35806404 -4.755274294 24.98932342 0.810824148 0.926631448 0.142111604 0.095932231 224.3244382 909242.8605 0.022938836 0.057553864 1.76E-05 4.755274294 0.1158073 S(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_HeLa_A485_30min_R1 3 SSSAPNVHINTIEPVNIDDLIR 22 0 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.357)S(0.357)S(0.287)APNVHINTIEPVNIDDLIR;S(0.362)S(0.362)S(0.276)APNVHINTIEPVNIDDLIR;S(0.357)S(0.357)S(0.286)APNVHINTIEPVNIDDLIR ;; 233.19 2.86E-37 1767950000 406217 555239 503866 459641 740830 561593 654841 702972 613985 749006 TRUE FALSE FALSE 496578.5702 620169.3711 690267.001 484750.024 667070.364 590997.1411 514928.8708 530567.0148 737206.1577 562292.5886 0.883131985 1.102930011 1.227593987 0.862095702 1.18634031 1.051049139 0.915766776 0.943578175 1.311072158 1 19.10096151 -7.73971123 24.99992682 1.15553654 1.02877449 0.130994411 0.137024499 433.5382655 498822.6216 0.090384342 0.034095606 1.82E-08 7.73971123 -0.12676205 S(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_HeLa_A486_30min_R1 1 SSSAPNVHINTIEPVNIDDLIR 22 0 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.36)S(0.36)S(0.281)APNVHINTIEPVNIDDLIR 211.19 1.81E-27 95131000 27066 41650 36551 13556 42025 39157 37253 37196 36422 38390 TRUE FALSE FALSE 25168.81317 38349.50231 50704.52607 31559.05308 36753.83263 34326.20746 27931.90538 28727.28278 39579.08829 28776.89412 0.87461882 1.332649109 1.761987442 1.096680307 1.277199425 1.192839203 0.970636555 0.998276001 1.375377347 1 14.81262327 -6.471288868 3.611873042 1.084783993 1.289204419 0.1143474 0.234066664 0.513010668 13.5204212 0.092064893 0.076631431 3.38E-07 6.471288868 0.204420427 S(ph)SSASSPEMK ddPTM_HeLa_A485_30min_R1 1 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.333)S(0.333)S(0.333)AS(0.001)SPEMK 127.87 9.70E-05 1149400000 407650 410510 319640 516930 519390 450350 631170 595370 383950 693700 TRUE FALSE FALSE 498330.3361 458515.5735 437888.1373 545168.577 467677.7079 473929.6296 496315.3733 449354.574 461005.2432 520773.3566 0.956904438 0.88045129 0.840842051 1.046844217 0.898044614 0.910049686 0.953035264 0.862860145 0.885232006 1 18.99029611 S(ph)SSDPGIPGGPQAIPATNSPDHSDHTLSVSSDSGHSTASAR ddPTM_HeLa_A485_30min_R1 1 SSSDPGIPGGPQAIPATNSPDHSDHTLSVSSDSGHSTASAR 41 0 Q68CZ2;E9PCX8;C9JHU5 Q68CZ2 TNS3 Tensin-3 1 0 S(0.732)S(0.134)S(0.134)DPGIPGGPQAIPATNSPDHSDHTLSVSSDSGHSTASAR 150.68 3.85E-11 1080900000 33540 94978 125850 9048.1 160110 31119 54045 40083 74652 27794 TRUE FALSE FALSE 41000.85729 106084.8509 172407.1521 9542.374792 144168.8862 32748.34272 42497.84424 30252.5814 89633.97165 20865.46731 1.965010257 5.084230769 8.262798503 0.457328592 6.909449191 1.569499606 2.03675497 1.449887556 4.295804657 1 14.34882961 -6.295197969 24.98761584 2.096404838 4.546712402 0.23371478 2.23176239 965.4611785 714617.3304 0.762423145 0.672429143 5.07E-07 6.295197969 2.450307564 S(ph)SSDPPAVHPPLPPLR ddPTM_HeLa_A485_30min_R1 4 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 S(0.364)S(0.364)S(0.273)DPPAVHPPLPPLR;S(0.369)S(0.369)S(0.262)DPPAVHPPLPPLR;S(0.364)S(0.364)S(0.272)DPPAVHPPLPPLR;S(0.357)S(0.357)S(0.287)DPPAVHPPLPPLR ;;; 148.36 4.47E-08 935610000 797300 972790 982520 913860 1212790 1028080 1229350 1140220 1052940 1399070 TRUE FALSE FALSE 974656.6343 1086549.328 1345995.034 963781.8578 1092040.369 1081908.679 966689.3296 860579.2572 1264255.4 1050307.597 0.927972565 1.034505826 1.28152461 0.917618668 1.039733857 1.030087455 0.920386878 0.819359262 1.203700138 1 20.00238047 S(ph)SSDPPAVHPPLPPLR ddPTM_HeLa_A486_30min_R1 3 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 S(0.357)S(0.357)S(0.286)DPPAVHPPLPPLR;S(0.359)S(0.359)S(0.282)DPPAVHPPLPPLR;S(0.358)S(0.358)S(0.284)DPPAVHPPLPPLR ;; 112.82 0.00011815 484510000 621840 718300 578250 201508 782860 616680 719310 710640 608550 736940 TRUE FALSE FALSE 578252.2272 661379.292 802163.8861 469120.8077 684666.3989 540600.2915 539331.0299 548842.7852 661299.604 552405.4273 1.046789547 1.197271532 1.452128901 0.8492328 1.239427357 0.97862958 0.976331881 0.993550675 1.197127275 1 19.07536797 -5.26798774 24.99513328 1.037118267 1.228584147 0.296473388 0.140080931 660.3474739 2520550.944 0.038533375 0.058658165 5.40E-06 5.26798774 0.19146588 S(ph)SSEAKPTSLGLAGGHK ddPTM_HeLa_A485_30min_R1 1 SSSEAKPTSLGLAGGHK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.895)S(0.016)S(0.089)EAKPTSLGLAGGHK 124.86 1.15E-05 276250000 242590 129320 113400 344440 237880 149100 220950 131130 138280 435460 TRUE FALSE FALSE 296553.3086 144442.8491 155351.379 363255.885 214195.832 156906.6454 173742.2275 98970.1619 166031.5276 326907.836 0.907146528 0.441845784 0.475214607 1.111187451 0.655217796 0.479972115 0.53147159 0.302746374 0.50788482 1 18.31852443 -6.124914665 5.545812708 0.520242768 0.715581136 0.079002512 0.246211674 0.518735714 21.33869366 0.081809114 0.082125376 7.50E-07 6.124914665 0.195338368 S(ph)SSEAKPTSLGLAGGHK ddPTM_HeLa_A486_30min_R1 2 SSSEAKPTSLGLAGGHK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.801)S(0.176)S(0.022)EAKPTSLGLAGGHK;S(0.904)S(0.046)S(0.049)EAKPTSLGLAGGHK ; 145.73 4.25E-08 579760000 835230 1007890 696450 150656 1258680 978970 1017340 1099610 843650 836210 TRUE FALSE FALSE 776684.6901 928021.1257 966134.0916 350734.7817 1100804.618 858194.6348 762790.7717 849252.8073 916778.2613 626817.5732 1.239092079 1.480528252 1.541332172 0.559548418 1.756180211 1.369129826 1.216926271 1.354864387 1.46259183 1 19.2576861 -10.29818514 4.630724465 0.999814404 1.329973232 0.100480727 0.297207957 0.000552077 8.37E-05 0.278976241 0.067623913 5.03E-11 10.29818514 0.330158827 S(ph)SSEAKPTSLGLAGGHKETR ddPTM_HeLa_A485_30min_R1 1 SSSEAKPTSLGLAGGHKETR 20 2 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.967)S(0.028)S(0.005)EAKPTSLGLAGGHKETR 96.679 0.00015519 340860000 118610 164530 101600 65917 183470 168960 216200 214590 87908 94764 TRUE FALSE FALSE 144994.3853 183770.3523 139186.0679 69517.8788 165203.0826 177806.4843 170007.1038 161961.466 105550.3293 71141.0788 2.038124635 2.583181973 1.956479579 0.977183365 2.32218973 2.499350408 2.389717821 2.2766237 1.483676253 1 16.11839523 -8.74892366 15.82146272 0.999999971 2.076009087 0.312760054 0.470075015 0 0 0.478654868 0.116090858 1.78E-09 8.74892366 1.076009117 S(ph)SSEDAESLAPR ddPTM_HeLa_A485_30min_R1 3 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.809)S(0.096)S(0.096)EDAESLAPR;S(0.91)S(0.045)S(0.045)EDAESLAPR;S(0.743)S(0.128)S(0.128)EDAESLAPR ;; 274.8 1.17E-40 3356930000 2116550 2292520 1844120 2095730 2837300 2066160 2717340 2836130 1847920 2754500 TRUE FALSE FALSE 2587369.245 2560610.272 2526336.728 2210214.423 2554808.45 2174340.943 2136758.11 2140564.671 2218780.594 2067853.843 1.251234102 1.238293645 1.221719193 1.068844605 1.235487923 1.051496434 1.033321633 1.03516246 1.072987146 1 20.97970279 -5.518507714 0.447661658 1.009875003 1.309143689 0.7263146 0.050592396 0.964187105 0.321925965 0.044024634 0.137905719 3.03E-06 5.518507714 0.299268685 S(ph)SSEDAESLAPR ddPTM_HeLa_A486_30min_R1 2 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.823)S(0.126)S(0.051)EDAESLAPR;S(0.739)S(0.13)S(0.13)EDAESLAPR ; 252.59 3.58E-33 3454700000 3385300 3350800 2395700 898610 4065200 3299800 3495200 3679100 3340400 3169700 TRUE FALSE FALSE 3148007.952 3085270.405 3323379.199 2092009.493 3555304.71 2892704.226 2620663.992 2841449.244 3629948.562 2375986.489 1.324926706 1.298521864 1.398736573 0.880480383 1.496348875 1.217475032 1.102979333 1.195902947 1.527764816 1 21.1800952 -11.30355443 1.914435678 7.73E-05 1.262348665 0.167172523 0.180742623 2670108.292 340970.2104 11532939.99 0.044266129 4.97E-12 11.30355443 1.262271412 S(ph)SSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPR ddPTM_HeLa_A485_30min_R1 2 SSSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPR 35 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 S(0.355)S(0.355)S(0.29)EPAVHAPGTPGNPVSLSTNSSLASSGELVEPR;S(0.333)S(0.333)S(0.333)EPAVHAPGTPGNPVSLSTNSSLASSGELVEPR ; 258.83 1.39E-64 470540000 57862 88940 80761 72134 97451 81625 97774 100762 82911 94196 TRUE FALSE FALSE 70733.20228 99340.75932 110637.8546 76074.49777 87748.43627 85898.75878 76883.78616 76049.96151 99550.4772 70714.67075 1.000262061 1.40481117 1.564567203 1.075795121 1.240880221 1.214723308 1.087239541 1.075448145 1.407776861 1 16.10972193 -5.307287675 24.99198155 1.163495039 1.33137425 0.166996125 0.16902154 725.1277524 395266.8066 0.047190999 0.069995814 4.93E-06 5.307287675 0.167879211 S(ph)SSERRPATPAEVR ddPTM_HeLa_A485_30min_R1 1 SSSERRPATPAEVR 14 2 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 S(0.358)S(0.358)S(0.284)ERRPATPAEVR 96.208 0.00068362 422390000 129680 255690 274930 101350 266120 213250 223470 282850 232360 157480 TRUE FALSE FALSE 158526.8686 285590.7213 376638.0478 106886.4939 239624.1584 224415.4403 175723.8089 213480.594 278992.5207 118223.1342 1.340912417 2.415692353 3.185823573 0.904108105 2.026880441 1.898236261 1.486374136 1.805742974 2.359880937 1 16.85115285 -5.265398396 24.9782834 1.694204304 2.324297706 0.211693214 0.589479495 555.2766662 3503361.778 0.162956887 0.252003488 5.43E-06 5.265398396 0.630093401 S(ph)SSERSTPPYLFPEYPEASK ddPTM_HeLa_A485_30min_R1 1 SSSERSTPPYLFPEYPEASK 20 1 Q8TE76-2;Q8TE76-3;Q8TE76 Q8TE76-2 MORC4 MORC family CW-type zinc finger protein 4 1 0 S(0.193)S(0.193)S(0.193)ERS(0.193)T(0.193)PPY(0.036)LFPEYPEASK 44.089 0.011665 0 40525 59118 44273 45860 98492 65033 89777 128530 53940 88133 TRUE FALSE FALSE 49539.64644 66031.33584 60651.42505 48365.21568 88685.79065 68438.02732 70595.41054 97007.81597 64765.26323 66163.06507 0.748750778 0.998009022 0.91669612 0.731000228 1.340412367 1.034384173 1.066991235 1.466192896 0.978873381 1 16.01373845 -5.756036411 24.99999399 1.161406526 0.864148113 0.449018893 0.161580415 123.6324535 572054.2178 0.046818976 0.058691447 1.75E-06 5.756036411 -0.297258413 S(ph)SSFSDTLEESSPIAAIFDTENLEK ddPTM_HeLa_A485_30min_R1 1 SSSFSDTLEESSPIAAIFDTENLEK 25 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 S(0.281)S(0.281)S(0.281)FS(0.144)DT(0.013)LEESSPIAAIFDTENLEK 232.46 3.62E-39 115020000 90427 81181 72340 112300 108850 94281 147730 143580 86829 161630 TRUE FALSE FALSE 110542.1742 90674.41177 99101.57632 118434.6646 98012.5118 99217.40737 116166.2787 108366.7799 104254.7839 121338.6156 0.911022214 0.747284048 0.816735677 0.97606738 0.807760261 0.817690287 0.957372705 0.89309392 0.859205319 1 16.88867923 -14 0.117660984 1.454067927 0.793475557 0.290728495 0.066249182 199.8642828 1.531423913 21.5096891 0.690347431 1.00E-14 14 -0.660592371 S(ph)SSFSELCHR ddPTM_HeLa_A485_30min_R1 1 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 S(0.333)S(0.333)S(0.333)FSELCHR 170.52 1.95E-07 333810000 210210 234360 263450 219100 286520 232300 279870 268300 253820 349840 TRUE FALSE FALSE 256970.4893 261766.3633 360911.1181 231068.8782 257993.0628 244462.8688 220073.4882 202499.0043 304759.3458 262631.3263 0.97844569 0.996706551 1.374211992 0.879822226 0.98233926 0.930821438 0.837955971 0.771039035 1.160407443 1 18.00267948 S(ph)SSFSELCHR ddPTM_HeLa_A486_30min_R1 1 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 S(0.333)S(0.333)S(0.333)FSELCHR 167.18 2.77E-07 316320000 221270 267700 211750 34186 297110 220320 230540 241530 258320 211990 TRUE FALSE FALSE 205760.1156 246486.4771 293745.2709 79586.73566 259843.6934 193139.1584 172856.4536 186538.8916 280711.3856 158906.3242 1.294851647 1.551143281 1.848543615 0.500840581 1.635200454 1.215427765 1.087788384 1.173892182 1.766521169 1 17.27781702 S(ph)SSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR ddPTM_HeLa_A485_30min_R1 1 SSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 44 0 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 S(0.333)S(0.333)S(0.333)IS(0.002)GVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 231.9 1.06E-41 122960000 3192.6 5231.1 4911.2 2847.7 5722.1 2294.2 4823.5 5170.6 5278.7 6096.7 TRUE FALSE FALSE 3902.782856 5842.83164 6728.057252 3003.26264 5152.387632 2414.320764 3792.919821 3902.502243 6338.086671 4576.904891 0.852712247 1.276590137 1.470001543 0.656177638 1.125736225 0.52750075 0.828708464 0.852650937 1.384797548 1 12.1601566 -5.264163407 24.99929253 0.8942213 1.207450184 0.197913082 0.264985805 362.3807193 3325697.311 0.073486145 0.114866891 5.44E-06 5.264163407 0.313228884 S(ph)SSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR ddPTM_HeLa_A486_30min_R1 1 SSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 44 0 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 S(0.323)S(0.323)S(0.323)IS(0.03)GVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 97.47 1.21E-05 65993000 5472.1 5277.3 3586.9 2124 5002.7 4523 6792 6637.8 3684.5 7297.5 TRUE FALSE FALSE 5088.534048 4859.107528 4975.843741 4944.779341 4375.214718 3964.998246 5092.569762 5126.517842 4003.875427 5470.158501 0.930235211 0.888293735 0.909634289 0.903955405 0.799833262 0.724841565 0.93097298 0.937179031 0.731948704 1 12.41736692 -5.64297285 10.51593149 0.848397022 0.907172687 0.088597792 0.083525138 0.826595144 72.07875702 0.024684706 0.031867772 2.28E-06 5.64297285 0.058775665 S(ph)SSKDSRPSQAAGDNQGDEAK ddPTM_HeLa_A485_30min_R1 4 SSSKDSRPSQAAGDNQGDEAK 21 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.983)S(0.011)S(0.006)KDSRPSQAAGDNQGDEAK;S(0.398)S(0.398)S(0.202)KDS(0.001)RPSQAAGDNQGDEAK;S(0.361)S(0.361)S(0.266)KDS(0.012)RPSQAAGDNQGDEAK;S(0.333)S(0.333)S(0.333)KDS(0.001)RPSQAAGDNQGDEAK ;;; 322.29 8.38E-103 4405534000 1580256 985502 614312 3310171 1412625 1475893 2746521 2254786 1094231 4356571 TRUE FALSE FALSE 1931778.495 1100747.886 841571.5725 3490997.26 1271979.095 1553168.475 2159704.351 1701796.198 1313833.125 3270558.026 0.590657154 0.336562714 0.257317426 1.067401108 0.388918064 0.474894028 0.660347358 0.520338176 0.401715277 1 21.64110538 -10.55663309 2.837131007 1.0262517 0.523536257 0.308810266 0.214518473 57190680.26 59256623.63 11420175.17 0.05415293 2.78E-11 10.55663309 -0.502715443 S(ph)SSKDSRPSQAAGDNQGDEAK ddPTM_HeLa_A486_30min_R1 3 SSSKDSRPSQAAGDNQGDEAK 21 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.333)S(0.333)S(0.333)KDS(0.001)RPSQAAGDNQGDEAK;S(0.276)S(0.276)S(0.245)KDS(0.193)RPS(0.01)QAAGDNQGDEAK;S(0.333)S(0.333)S(0.333)KDSRPSQAAGDNQGDEAK ;; 243.27 7.81E-47 2362744000 643620 573284 178403 525598 410147 766738 1136530 958188 396576 1477060 TRUE FALSE FALSE 598505.5617 527854.888 247485.4194 1223618.706 358702.5388 672145.6612 852158.173 740029.5095 430951.527 1107194.562 0.540560424 0.476749892 0.223524779 1.105152381 0.32397426 0.607070956 0.769655309 0.668382536 0.389228363 1 20.07847733 -14 0.209454569 2.970207299 0.514514169 0.221326071 0.238201206 227.6588247 2.26880137 189.3784073 0.50381984 1.00E-14 14 -2.45569313 S(ph)SSKDSRPSQAAGDNQGDEAKEQTFSGGTSQDTK ddPTM_HeLa_A486_30min_R1 1 SSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQDTK 34 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.331)S(0.331)S(0.331)KDS(0.005)RPS(0.001)QAAGDNQGDEAKEQTFSGGTSQDTK 94.93 0.00076622 223750000 45226 29709 11612 61353 49644 54429 122010 123770 23953 130080 TRUE FALSE FALSE 42055.89095 27354.75064 16108.47738 142832.8846 43417.18661 47714.10337 91481.80751 95590.27288 26029.26533 97507.12132 0.431310969 0.280541055 0.165203086 1.464845672 0.445271956 0.489339678 0.938206423 0.980341452 0.266947326 1 16.57321997 S(ph)SSKESLVR ddPTM_HeLa_A485_30min_R1 1 SSSKESLVR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 S(0.488)S(0.288)S(0.224)KESLVR 87.001 0.0019683 1263600000 698550 617340 476610 1145400 1150300 757590 1280700 1298100 664120 1463800 TRUE FALSE FALSE 853940.0375 689532.5429 652927.8724 1207970.302 1035772.093 797256.2409 1007067.983 979738.9397 797402.7923 1098901.599 0.77708508 0.627474328 0.594164093 1.099252474 0.942552176 0.725502849 0.916431447 0.891562029 0.725636211 1 20.06763078 -5.236580661 24.99748247 0.890785859 0.662364465 0.463253893 0.115041934 726.3373154 730390.8792 0.031680011 0.054842003 5.80E-06 5.236580661 -0.228421394 S(ph)SSKESLVR ddPTM_HeLa_A486_30min_R1 1 SSSKESLVR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 S(0.444)S(0.277)S(0.277)KES(0.001)LVR 70.488 0.0070886 398040000 422840 372340 183680 269610 389730 487680 641790 643600 348210 813160 TRUE FALSE FALSE 393201.0995 342834.4224 254805.8151 627665.7053 340846.4293 427515 481207.3538 497066.3297 378393.1232 609539.4432 0.645079008 0.562448298 0.418030068 1.029737636 0.55918683 0.701373807 0.789460566 0.815478531 0.620785295 1 19.21736005 -13.99999997 0.056254786 2.155602171 0.162402493 0.305060471 0.154976774 560.3620614 2.308891414 92.52991246 17.17892017 1.00E-14 13.99999997 -1.993199678 S(ph)SSLDALGPTRK ddPTM_HeLa_A486_30min_R1 2 SSSLDALGPTRK 12 1 Q9H425;Q9H425-2;Q9H425-3;E5RI90 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 S(0.365)S(0.365)S(0.27)LDALGPTRK;S(0.361)S(0.361)S(0.279)LDALGPTRK ; 112.42 0.00039022 287030000 972490 874760 522250 363210 887860 1068220 1319070 1286470 681440 1586900 TRUE FALSE FALSE 904323.4729 805440.8318 724479.1863 845571.2356 776496.3198 936433.8773 989024.7343 993568.8644 740507.7679 1189529.911 0.76023601 0.677108515 0.609046632 0.710844871 0.652775784 0.787230206 0.831441669 0.835261775 0.622521352 1 20.18196012 -6.347624142 4.956403666 0.808276913 0.679427774 0.340848733 0.092672745 0.278926772 11.71962914 0.031982146 0.028140764 4.49E-07 6.347624142 -0.128849139 S(ph)SSLDGEHHDGYHR ddPTM_HeLa_A485_30min_R1 1 SSSLDGEHHDGYHR 14 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 S(0.461)S(0.461)S(0.078)LDGEHHDGYHR 89.358 0.00098004 1719100000 597750 670590 517080 558950 626610 568880 604050 664460 495300 644620 TRUE FALSE FALSE 730717.4253 749009.6671 708369.4095 589484.0232 564222.5082 598665.6771 474989.7829 501500.1432 594702.1668 483928.0974 1.509971067 1.54777057 1.46379062 1.21812316 1.165922192 1.237096338 0.981529664 1.036311274 1.22890605 1 18.88443318 -5.358690236 1.126429266 1.088545716 1.5640848 0.829389479 0.08153656 0.211990665 0.524649378 0.031128097 0.075457433 4.38E-06 5.358690236 0.475539084 S(ph)SSLDGEHHDGYHR ddPTM_HeLa_A486_30min_R1 4 SSSLDGEHHDGYHR 14 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 S(0.369)S(0.369)S(0.262)LDGEHHDGYHR;S(0.411)S(0.411)S(0.178)LDGEHHDGYHR;S(0.452)S(0.452)S(0.095)LDGEHHDGYHR;S(0.352)S(0.352)S(0.296)LDGEHHDGYHR ;;; 121.45 4.15E-05 3297703000 1300690 1349346 1116593 274583.9 1408325 1159573 1188078 1127091 1243220 1127414 TRUE FALSE FALSE 1209518.348 1242418.909 1548967.713 639245.1959 1231679.746 1016516.673 890808.3182 870476.9835 1350983.311 845102.1962 1.431209566 1.470140433 1.832876213 0.756411708 1.457432902 1.202832838 1.054083544 1.030025703 1.598603479 1 19.68876629 -5.248057049 24.99629703 1.16843938 1.567281879 0.382618638 0.244664712 854.3817066 1595861.502 0.064141933 0.110296013 5.65E-06 5.248057049 0.398842499 S(ph)SSLESLQTAVAEVTLNGDIPFHRPR ddPTM_HeLa_A485_30min_R1 1 SSSLESLQTAVAEVTLNGDIPFHRPR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.31)S(0.31)S(0.31)LES(0.069)LQTAVAEVTLNGDIPFHRPR 106.11 0.00032729 53245000 11023 7626.2 10104 14814 11663 7012.6 7962.9 8253.3 9050 21723 TRUE FALSE FALSE 13475.02832 8518.017751 13841.89006 15623.25131 10501.79077 7379.768892 6261.561364 6229.165234 10866.25199 16307.85588 0.826290618 0.522326038 0.848786632 0.958019952 0.643971276 0.452528459 0.383959817 0.381973282 0.666320089 1 13.99327949 -5.997416823 24.6791168 0.52870986 0.777460881 0.18286709 0.198621713 97.06099965 927276.7927 0.060854764 0.068593239 1.01E-06 5.997416823 0.24875102 S(ph)SSLESLQTAVAEVTLNGDIPFHRPR ddPTM_HeLa_A486_30min_R1 1 SSSLESLQTAVAEVTLNGDIPFHRPR 26 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.333)S(0.333)S(0.333)LESLQTAVAEVTLNGDIPFHRPR 127.83 4.72E-06 55370000 15430 12046 11753 8097.5 10956 16342 15258 14192 16006 22577 TRUE FALSE FALSE 14348.43668 11091.43109 16304.07636 18851.38922 9581.796319 14325.89019 11440.28702 10960.79141 17393.41297 16923.57225 0.847837352 0.655383564 0.963394496 1.113913124 0.566180484 0.846505099 0.675997174 0.647664172 1.027762503 1 14.04674651 -3.936419468 14.95291992 0.817861439 1.114952137 0 0.180475701 4354233.846 24457179.76 0.044710635 39096071.82 0.000115766 3.936419468 0.297090699 S(ph)SSLESLQTAVAEVTLNGDIPFHRPRPR ddPTM_HeLa_A485_30min_R1 3 SSSLESLQTAVAEVTLNGDIPFHRPRPR 28 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.364)S(0.364)S(0.273)LESLQTAVAEVTLNGDIPFHRPRPR;S(0.332)S(0.332)S(0.332)LES(0.004)LQTAVAEVTLNGDIPFHRPRPR;S(0.333)S(0.333)S(0.333)LES(0.001)LQTAVAEVTLNGDIPFHRPRPR ;; 223.53 9.30E-39 686630000 42017.9 40223.4 35240.2 38796.9 47285 41654 51302.2 58908.7 33165.5 54721.9 TRUE FALSE FALSE 51364.63689 44927.17673 48277.01645 40916.27641 42577.13937 43834.93903 40341.06587 44461.24896 39821.51164 41080.73741 1.250333858 1.093631214 1.175174047 0.995996639 1.036425879 1.067043627 0.981994687 1.082289456 0.969347537 1 15.32617446 -1 0.447599167 1.011783194 6.165998223 0.686276504 0.048003614 48.19657145 0.585033591 0.028425588 226.6292363 0.1 1 5.154215028 S(ph)SSLVDIR ddPTM_HeLa_A485_30min_R1 1 SSSLVDIR 8 0 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 0 S(0.897)S(0.051)S(0.051)LVDIR 93.178 0.0027033 0 230790 324620 270760 239430 328290 275530 336130 354180 247490 318220 TRUE FALSE FALSE 282128.4393 362581.4852 370925.3913 252509.4546 295604.2949 289956.3247 264313.0796 267316.7997 297158.9729 238893.6104 1.180979428 1.517752964 1.552680252 1.056995431 1.237388871 1.213746673 1.106404977 1.118978441 1.243896697 1 17.86600874 -5.265488256 24.99676992 1.150364674 1.427199092 0.535791538 0.117963262 259.4798086 1601966.871 0.032387396 0.050068961 5.43E-06 5.265488256 0.276834418 S(ph)SSMEIR ddPTM_HeLa_A486_30min_R1 1 SSSMEIR 7 0 E9PK89;Q8TBN0;Q8TBN0-2 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 0 S(0.414)S(0.414)S(0.171)MEIR 91.318 0.0065222 831730000 1692300 1958300 1577800 562660 2163600 1847500 2071700 2095100 1727300 2071600 TRUE FALSE FALSE 1573678.509 1803117.176 2188766.415 1309900.915 1892221.113 1619574.234 1553338.748 1618091.466 1877023.755 1552857.876 1.013407945 1.161160467 1.409508525 0.843542049 1.21854108 1.042963596 1.000309669 1.042008731 1.208754377 1 20.56649436 -5.262614794 24.99955651 1.057174241 1.191339113 0.191763769 0.134817318 187.4125501 3986054.538 0.036714081 0.058085346 5.46E-06 5.262614794 0.134164872 S(ph)SSMELHR ddPTM_HeLa_A486_30min_R1 1 SSSMELHR 8 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.388)S(0.388)S(0.224)MELHR 130.66 0.00014976 0 168320 173890 116330 35583 141300 154940 144430 136810 145260 182420 TRUE FALSE FALSE 156521.6372 160110.3231 161376.0914 82839.02227 123576.8364 135825.0781 108292.0864 105661.3495 157851.2538 136740.8446 1.144658991 1.170903423 1.180160119 0.605810374 0.903730241 0.993302904 0.791951276 0.772712424 1.154382615 1 17.06108472 -5.208120671 24.99564175 0.880306773 1.165807423 0.446592829 0.140773438 286.584656 134349.4189 0.037434276 0.064838019 6.19E-06 5.208120671 0.28550065 S(ph)SSMSSIDLVSASDDVHR ddPTM_HeLa_A485_30min_R1 1 SSSMSSIDLVSASDDVHR 18 0 A0A2R8YFA1;A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3;A0A0A0MRE4 A0A2R8YFA1 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 S(0.333)S(0.333)S(0.333)MS(0.002)SIDLVSASDDVHR 217.33 2.00E-34 340640000 97191 143040 163020 110740 198540 144830 188170 216410 144140 156820 TRUE FALSE FALSE 118810.8026 159767.2837 223327.8818 116789.4458 178772.6605 152413.0749 147965.9423 163335.1082 173067.5759 117727.6601 1.009200409 1.357092154 1.89698735 0.992030639 1.518527255 1.294624176 1.256849429 1.387397899 1.470067236 1 16.8450938 S(ph)SSMSYVDGFIGTWPK ddPTM_HeLa_A486_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.328)S(0.328)S(0.328)MS(0.013)Y(0.002)VDGFIGTWPK 97.767 0.0061506 70399000 212080 223530 168200 111280 230220 254320 322950 329540 206260 282150 TRUE FALSE FALSE 197214.2872 205816.6687 233331.5446 259065.4638 201343.6609 222944.5841 242144.4942 254510.9358 224138.7829 211497.8035 0.932464942 0.973138564 1.10323389 1.224908531 0.951989371 1.054122456 1.144903116 1.203373896 1.059768845 1 17.69028315 -4.700819975 4.383650105 1.10047764 0.943747445 0.328326499 0.080178523 0.227314234 8.601963711 0.021304986 0.059560467 1.99E-05 4.700819975 -0.156730195 S(ph)SSPAGETEGDREPQAR ddPTM_HeLa_A485_30min_R1 1 SSSPAGETEGDREPQAR 17 1 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.501)S(0.25)S(0.25)PAGETEGDREPQAR 82.482 0.0012514 1154000000 836580 835490 506340 784570 665460 762290 969170 896940 621480 854540 TRUE FALSE FALSE 1022674.335 933193.2877 693656.2366 827429.0725 599204.4658 802202.3257 762098.9121 676964.0587 746205.3354 641518.9046 1.594145282 1.454662179 1.0812717 1.289796866 0.934040231 1.2504734 1.187960178 1.055251924 1.163185262 1 19.29113225 -4.647913186 3.740277383 1.128168562 1.568685034 0.707769469 0.105113406 0.110869284 2.842359364 0.026006839 0.080144444 2.25E-05 4.647913186 0.440516472 S(ph)SSPAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_A485_30min_R1 1 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.33)S(0.33)S(0.33)PAGET(0.01)EGDREPQARPGEGTAPLPPPGQK 135.11 5.88E-07 1774600000 541020 494220 296210 1004600 648930 483210 887420 816570 420240 1129100 TRUE FALSE FALSE 661368.0325 552014.7299 405790.4053 1059478.754 584320.2507 508510.1284 697815.4674 616304.9272 504578.3133 847636.1495 0.780249914 0.651240193 0.47873183 1.249921626 0.689352679 0.599915575 0.823248829 0.727086649 0.595277011 1 19.69308559 -11.37686869 2.179029558 2.753227542 0.735428544 0.142101719 0.196876658 6837384.756 755505.7559 59094924.98 0.050255277 4.20E-12 11.37686869 -2.017798998 S(ph)SSPAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_A486_30min_R1 2 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.333)S(0.333)S(0.333)PAGETEGDREPQARPGEGTAPLPPPGQK;S(0.302)S(0.302)S(0.302)PAGET(0.079)EGDREPQARPGEGT(0.014)APLPPPGQK ; 167.01 9.20E-15 3938290000 798189 745725 415133 251136 699700 708751 753455 852996 628693 794302 TRUE FALSE FALSE 742240.073 686631.0351 575883.6152 584657.2997 611937.1016 621312.5077 564932.5898 658787.4316 683188.6154 595403.6092 1.246616684 1.153219471 0.967215526 0.981951219 1.027768546 1.04351485 0.948822918 1.10645522 1.147437813 1 19.18350844 -4.564774136 4.396942254 1.028182469 1.229554512 0.599259747 0.058445013 0.129587541 5.432632098 0.016016053 0.050581725 2.72E-05 4.564774136 0.201372044 S(ph)SSPAPADIAQTVQEDLR ddPTM_HeLa_A485_30min_R1 1 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 S(0.333)S(0.333)S(0.333)PAPADIAQTVQEDLR 128.79 7.06E-06 25753000 25203 29856 26961 26255 40552 25941 31786 33708 24366 27827 TRUE FALSE FALSE 30809.3204 33347.39949 36934.99584 27689.24417 36514.50049 27299.23065 24994.66143 25441.06015 29256.0327 20890.24102 1.47481881 1.596314732 1.768050249 1.325463126 1.747921456 1.306793475 1.196475494 1.217844262 1.400464106 1 14.35054152 -6.426777409 5.529286035 1.225372266 1.578224049 0.594782504 0.149203666 0.164401306 7.549778888 0.051087556 0.044578455 3.74E-07 6.426777409 0.352851783 S(ph)SSPATEQSWMENDFDELR ddPTM_HeLa_A485_30min_R1 2 SSSPATEQSWMENDFDELR 19 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.333)S(0.333)S(0.333)PATEQSWMENDFDELR;S(0.333)S(0.333)S(0.333)PATEQSWMENDFDELR ; 176.94 2.29E-13 251890000 103362 156745 115230 106050 105904 128770 111557 131454 103017 103712 TRUE FALSE FALSE 126354.5203 175074.9642 157858.3721 111843.243 95359.82591 135512.1981 87721.93561 99214.70039 123691.567 77858.50708 1.62287366 2.248629865 2.027503198 1.436493547 1.224783643 1.740493148 1.126684018 1.274294924 1.588671188 1 16.24856706 -5.303800919 4.927975786 1.350769896 1.996766683 0.573308091 0.247115702 0.135593244 8.006061611 0.06749579 0.104682132 4.97E-06 5.303800919 0.645996787 S(ph)SSPATEQSWMENDFDELR ddPTM_HeLa_A486_30min_R1 3 SSSPATEQSWMENDFDELR 19 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.319)S(0.319)S(0.319)PAT(0.043)EQSWMENDFDELR;S(0.333)S(0.333)S(0.333)PATEQSWMENDFDELR;S(0.333)S(0.333)S(0.333)PAT(0.001)EQSWMENDFDELR ;; 260.24 3.94E-58 186566000 166445 139759 82145 48620 113723 114449 119736 111632 108103 150553 TRUE FALSE FALSE 154778.065 128683.9878 113953.7439 113189.8171 99458.80092 100329.446 89776.78636 86215.83051 117473.4551 112853.5489 1.371494885 1.14027418 1.009748874 1.002979687 0.88130858 0.889023403 0.795515846 0.763962067 1.040937182 1 16.78409226 -3.927553996 0.731343175 0.876965609 1.919020856 0.761359947 0.082077895 1.951007851 0.5694478 0.032704647 1.866374774 0.000118153 3.927553996 1.042055247 S(ph)SSPATEQSWMENDFDELREEGFR ddPTM_HeLa_A485_30min_R1 1 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.319)S(0.319)S(0.319)PAT(0.023)EQS(0.019)WMENDFDELREEGFR 45.332 0.026838 89382000 2754.2 3142.6 2858.5 2752.3 3520.4 2315.2 4369 4723.3 3058.7 3395.9 TRUE FALSE FALSE 3366.862288 3510.099733 3915.978102 2902.65118 3169.896615 2436.420292 3435.527459 3564.903269 3672.553034 2549.364627 1.320667217 1.376852764 1.536060421 1.138578275 1.243406526 0.955697065 1.347601446 1.398349703 1.440575818 1 11.31592202 -5.268788048 24.9345918 1.229903387 1.407759398 0.23800498 0.157536852 886.8175986 3009039.387 0.046371683 0.070386381 5.39E-06 5.268788048 0.177856011 S(ph)SSPATEQSWMENDFDELREEGFRR ddPTM_HeLa_A486_30min_R1 3 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.333)S(0.333)S(0.333)PATEQSWMENDFDELREEGFRR;S(0.333)S(0.333)S(0.333)PATEQSWMENDFDELREEGFRR;S(0.333)S(0.333)S(0.333)PATEQSWMENDFDELREEGFRR ;; 234.48 2.97E-49 1043689000 61008.4 60553.7 68422.4 29723.3 95349 60428.6 78294.9 86263 59179.4 66415.8 TRUE FALSE FALSE 56732.02621 55755.20428 94917.3857 69197.34453 83389.43933 52973.53372 58704.6879 66622.79801 64309.11804 49784.85139 1.13954395 1.119923084 1.906551552 1.389927711 1.674996249 1.064049249 1.179167684 1.338214259 1.291740685 1 15.6034192 -6.274688402 24.96622859 1.196056103 1.450512787 0.247402763 0.235274194 1298.871108 2447563.017 0.086051731 0.076319355 5.31E-07 6.274688402 0.254456683 S(ph)SSPCRTPEPDNDAHLR ddPTM_HeLa_A486_30min_R1 1 SSSPCRTPEPDNDAHLR 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 S(0.332)S(0.332)S(0.332)PCRT(0.003)PEPDNDAHLR 127.5 9.71E-06 299060000 328410 575610 553080 130280 711470 396380 420310 494060 468910 253700 TRUE FALSE FALSE 305390.1549 529996.5673 767247.388 303298.424 622230.7984 347478.6657 315143.9924 381573.3233 509555.4963 190171.8687 1.605863985 2.786934634 4.034494656 1.594864825 3.271939234 1.827182265 1.657153577 2.006465656 2.67944728 1 17.53694432 -6.290225084 24.16873428 1.885897659 2.683254832 0.218795298 0.775458297 791.6277884 664654.6411 0.268980465 0.237265978 5.13E-07 6.290225084 0.797357173 S(ph)SSPEAMDPPPPKAPPFPK ddPTM_HeLa_A485_30min_R1 1 SSSPEAMDPPPPKAPPFPK 19 1 K7ERU0;K7ENY2;Q9UK33 K7ERU0 ZNF580 Zinc finger protein 580 1 0 S(0.333)S(0.333)S(0.333)PEAMDPPPPKAPPFPK 79.568 0.0013107 198730000 327940 461250 287660 300020 466040 618870 738600 1012000 348950 593700 TRUE FALSE FALSE 400889.1216 515189.1752 394077.4045 316409.3329 419639.4212 651273.0762 580792.0762 763805.4132 418981.0642 445701.5162 0.899456491 1.155906265 0.884173354 0.709913073 0.941525676 1.461231458 1.303096478 1.713715088 0.94004855 1 18.76571834 -6.244994115 20.98018175 1.329442804 0.917939457 0.379874355 0.229745357 94.65425978 120754.9773 0.073899923 0.073531476 5.69E-07 6.244994115 -0.411503348 S(ph)SSPEAMDPPPPKAPPFPK ddPTM_HeLa_A486_30min_R1 1 SSSPEAMDPPPPKAPPFPK 19 1 K7ERU0;K7ENY2;Q9UK33 K7ERU0 ZNF580 Zinc finger protein 580 1 0 S(0.333)S(0.333)S(0.333)PEAMDPPPPKAPPFPK 100.94 0.00010121 129990000 470040 444070 259150 221010 476830 415550 608080 519500 351070 689430 TRUE FALSE FALSE 437092.6233 408880.2759 359499.8203 514522.4492 417021.5351 364283.666 455931.9524 401221.1906 381501.0303 516792.2406 0.845780159 0.791188884 0.695637032 0.995607923 0.806942331 0.704893838 0.882234516 0.77636845 0.738209672 1 18.97922488 -10.39337555 4.146947181 1.000595419 0.804807688 0.325966749 0.084506515 0.000461568 6.75E-05 0.081183491 0.019630651 4.04E-11 10.39337555 -0.195787732 S(ph)SSPELVTHLK ddPTM_HeLa_A485_30min_R1 4 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.333)S(0.333)S(0.333)PELVTHLK;S(0.333)S(0.333)S(0.333)PELVTHLK;S(0.333)S(0.333)S(0.333)PELVTHLK;S(0.424)S(0.424)S(0.153)PELVTHLK ;;; 193.28 3.27E-11 1445120000 1865220 1621210 1472460 2288870 2300850 1750710 2356520 1884600 1807450 3149190 TRUE FALSE FALSE 2280131.754 1810796.407 2017184.228 2413905.172 2071769.295 1842374.468 1853030.251 1422398.895 2170188.636 2364154.89 0.964459547 0.765938143 0.853236917 1.02104358 0.876325534 0.779295162 0.783802389 0.60165216 0.917955353 1 21.17289313 -6.206278269 5.433458284 0.789568225 0.894531054 0.083691204 0.116412687 0.412476091 26.99044734 0.038425285 0.038047203 6.22E-07 6.206278269 0.104962829 S(ph)SSPELVTHLK ddPTM_HeLa_A486_30min_R1 4 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.395)S(0.395)S(0.21)PELVTHLK;S(0.465)S(0.465)S(0.07)PELVTHLK;S(0.333)S(0.333)S(0.333)PELVTHLK;S(0.384)S(0.384)S(0.233)PELVTHLK ;;; 228.78 2.09E-18 18414680000 6434300 6966000 4138350 2111780 6434600 7006400 7838300 7578100 5780180 7120500 TRUE FALSE FALSE 5983288.797 6413988.79 5740829.949 4916330.563 5627512.468 6142021.604 5877074.435 5852732.059 6281210.656 5337480.453 1.120994981 1.201688483 1.075569269 0.92109575 1.05433875 1.150734257 1.101095261 1.096534612 1.176811927 1 22.34772745 -6.239148763 24.55910879 1.110822389 1.073300847 0.033639992 0.077985352 2525.994702 2783065.116 0.027859588 0.02782869 5.77E-07 6.239148763 -0.037521542 S(ph)SSPELVTHLKWDDPYYDIAR ddPTM_HeLa_A485_30min_R1 3 SSSPELVTHLKWDDPYYDIAR 21 1 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.333)S(0.333)S(0.333)PELVTHLKWDDPYYDIAR;S(0.364)S(0.364)S(0.273)PELVTHLKWDDPYYDIAR;S(0.333)S(0.333)S(0.333)PELVTHLKWDDPYYDIAR ;; 215.28 1.25E-28 1814580000 359890 634490 359730 235378 615350 705580 896290 1373060 372230 388400 TRUE FALSE FALSE 439946.2889 708688.0862 492809.0966 248236.1041 554083.5934 742523.0778 704790.3195 1036314.882 446933.1467 291579.028 1.508840646 2.430518035 1.690139034 0.851351024 1.900286167 2.546558588 2.417150247 3.55414753 1.532802787 1 18.15352743 -6.082418825 5.472595825 2.374956536 1.648550441 0.106401735 0.727701615 0.39585687 19.83343641 0.237805428 0.240146068 8.27E-07 6.082418825 -0.726406096 S(ph)SSPELVTHLKWDDPYYDIAR ddPTM_HeLa_A486_30min_R1 3 SSSPELVTHLKWDDPYYDIAR 21 1 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.333)S(0.333)S(0.333)PELVTHLKWDDPYYDIAR;S(0.333)S(0.333)S(0.333)PELVTHLKWDDPYYDIAR;S(0.36)S(0.36)S(0.281)PELVTHLKWDDPYYDIAR ;; 301.49 1.62E-87 842060000 768550 525320 390366 297256 823620 473160 826560 814330 367151 843250 TRUE FALSE FALSE 714678.6138 483691.73 541526.1696 692026.9905 720313.8996 414786.3299 619745.9455 628924.8357 398975.9443 632094.7114 1.130651152 0.76522034 0.856716818 1.094815347 1.139566408 0.656209145 0.980463741 0.994985125 0.63119646 1 19.26978122 -6.247443053 24.98584724 0.86025075 0.982092353 0.159512122 0.163878006 1877.417676 3351515.452 0.055044836 0.054781722 5.66E-07 6.247443053 0.121841603 S(ph)SSPGKPQAVSSLNSSHSR ddPTM_HeLa_A485_30min_R1 2 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR;S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR ; 237.6 9.66E-46 4003200000 1372540 1909720 1621330 784430 2786200 1538350 2399100 2572500 1642020 1800580 TRUE FALSE FALSE 1677856.788 2133045.142 2221127.436 827281.4246 2508796.145 1618895.627 1886512.686 1941590.341 1971558.353 1351728.543 1.241267558 1.578012947 1.643175656 0.612017427 1.855991099 1.197648474 1.395629837 1.436375929 1.458546069 1 20.36637403 -10.07646157 3.865860594 0.99991561 1.381613127 0.116253975 0.314158214 144954001.9 242925425.1 185391.3787 0.074332221 8.39E-11 10.07646157 0.381697517 S(ph)SSPGKPQAVSSLNSSHSR ddPTM_HeLa_A486_30min_R1 3 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR;S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR;S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR ;; 245.36 4.61E-46 6455400000 7279500 6515300 4555720 224681 7838700 5893680 6982800 6644000 6024300 3026210 TRUE FALSE FALSE 6769244.641 5999003.9 6319816.79 523068.7227 6855497.153 5166577.684 5235629.583 5131306.238 6546491.175 2268427.319 2.984113525 2.64456518 2.785990425 0.230586503 3.022136569 2.277603361 2.308043789 2.262054506 2.885916212 1 21.11326101 -10.38163313 7.713428978 0.999977142 2.345117955 0.222789077 0.769886029 0.000300159 2.41E-05 0.739361749 0.179318545 4.15E-11 10.38163313 1.345140813 S(ph)SSPHDKNLPQK ddPTM_HeLa_A485_30min_R1 2 SSSPHDKNLPQK 12 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.333)S(0.333)S(0.333)PHDKNLPQK;S(0.333)S(0.333)S(0.333)PHDKNLPQK ; 168.5 1.06E-10 2426500000 2126450 2475000 1441440 2181000 3304700 3179300 4751500 6247700 2172370 3842900 TRUE FALSE FALSE 2599471.466 2764429.72 1974688.639 2300142.507 2975672.464 3345763.232 3736303.209 4715441.779 2608344.733 2884935.753 0.901050037 0.958229214 0.684482709 0.797294187 1.0314519 1.159735785 1.295107943 1.634504953 0.904125761 1 21.46010776 -6.115004304 2.182424971 1.253596541 0.834827055 0.421569619 0.196003257 0.275605651 2.587429038 0.07244442 0.073513296 7.67E-07 6.115004304 -0.418769486 S(ph)SSPHDKNLPQK ddPTM_HeLa_A486_30min_R1 1 SSSPHDKNLPQK 12 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.333)S(0.333)S(0.333)PHDKNLPQK 147.12 1.01E-07 717170000 789270 634290 331270 91884 785440 602500 942940 914770 463950 698360 TRUE FALSE FALSE 733946.2488 584026.5504 459546.6157 213910.5956 686922.7913 528169.6758 707006.4386 706496.8403 504165.5596 523486.1104 1.402035764 1.115648608 0.877858278 0.40862707 1.312208247 1.008946876 1.350573443 1.349599973 0.963092524 1 18.99779173 S(ph)SSPHLGR ddPTM_HeLa_A486_30min_R1 1 SSSPHLGR 8 0 Q8IWY7;Q6IQ55-2;Q6IQ55 Q8IWY7 TTBK2 Tau-tubulin kinase 2 1 0 S(0.333)S(0.333)S(0.333)PHLGR 66.692 0.0099621 0 65340 72608 63972 6965.9 75830 64155 73268 65801 58122 46949 TRUE FALSE FALSE 60760.00342 66854.27765 88743.67163 16216.96724 66318.69431 56240.20838 54935.57145 50819.54873 63160.06176 35192.66481 1.726496238 1.899665115 2.521652512 0.460805322 1.884446508 1.598066207 1.560994933 1.444038097 1.794693925 1 15.10298714 -8.185778901 0.06366226 1.62E-15 2.836692799 0.147464319 0.484767906 89.41653809 3.225108778 77.58375142 62.41414996 6.52E-09 8.185778901 2.836692799 S(ph)SSPIRLPEMSGGQTNR ddPTM_HeLa_A485_30min_R1 1 SSSPIRLPEMSGGQTNR 17 1 Q9Y2I7 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 0 S(0.345)S(0.345)S(0.31)PIRLPEMSGGQTNR 56.529 0.0040587 0 109940 90687 81198 189740 114870 95554 180230 152570 77111 246420 TRUE FALSE FALSE 134395.7737 101292.0558 111236.5191 200105.0158 103433.1395 100557.0597 141722.3882 115151.9683 92586.4704 184992.029 0.726494944 0.547548218 0.60130439 1.08169534 0.559122142 0.543575095 0.766099971 0.622469892 0.500488972 1 17.49710358 -11.34056803 2.203331599 2.892471605 0.663770941 0.284291538 0.161319977 8519693.796 946041.0464 80438689.59 0.042533488 4.56E-12 11.34056803 -2.228700664 S(ph)SSPPILTKPTLKR ddPTM_HeLa_A486_30min_R1 1 SSSPPILTKPTLKR 14 2 A0A3B3ITI3;A0A3B3IS53;A0A3F2YNX6;Q92794 A0A3B3ITI3 KAT6A Histone acetyltransferase KAT6A 1 0 S(0.333)S(0.333)S(0.333)PPILTKPTLKR 73.208 0.0038912 382370000 360870 299250 187160 156090 348330 286760 363800 392560 238380 454840 TRUE FALSE FALSE 335574.8765 275536.3402 259633.3643 363385.4084 304639.2034 251382.4668 272773.3921 303182.6575 259042.9703 340945.1035 0.984248998 0.80815456 0.761510758 1.065817941 0.893513942 0.737310682 0.800050769 0.889241859 0.759779119 1 18.37917994 -6.042745997 24.93158793 0.826625789 0.899262174 0.084481827 0.104580553 1147.954756 669541.4752 0.034453512 0.034456543 9.06E-07 6.042745997 0.072636384 S(ph)SSPPPR ddPTM_HeLa_A486_30min_R1 1 SSSPPPR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.338)S(0.331)S(0.331)PPPR 89.046 0.0070375 834500000 755500 489740 696280 289340 501730 1144600 616560 604140 1101900 925170 TRUE FALSE FALSE 702543.3514 450931.2188 965898.263 673598.1424 438798.345 1003390.889 462290.1667 466590.5103 1197413.579 693501.4102 1.013038101 0.650223939 1.392784858 0.971300321 0.632728843 1.446847656 0.666603067 0.672803982 1.726620251 1 19.40353929 -7.753188261 24.99992407 1.363310197 0.936649387 0.220633401 0.325012847 239.7632181 726470.0836 0.218866007 0.079638445 1.77E-08 7.753188261 -0.42666081 S(ph)SSPRGEASSLNGESH ddPTM_HeLa_A486_30min_R1 1 SSSPRGEASSLNGESH 16 1 Q8IY57;Q8IY57-5;Q8IY57-3 Q8IY57 YAF2 YY1-associated factor 2 1 0 S(0.727)S(0.136)S(0.136)PRGEASSLNGESH 98.543 0.0002882 366560000 166750 186780 252130 46825 502160 185070 287150 380370 154040 157650 TRUE FALSE FALSE 155061.6861 171978.8726 349761.4883 109010.9664 439174.4103 162237.9451 215302.0328 293768.0544 167392.3112 118173.4139 1.312153733 1.455309337 2.959730762 0.922466085 3.716355447 1.372880242 1.821915994 2.485906473 1.416497212 1 16.85054598 -7.976453551 6.733742671 1.000581318 2.011405509 0.145899987 0.803727695 0.252517262 41.12601468 0.730395822 0.189244724 1.06E-08 7.976453551 1.010824191 S(ph)SSPTLTPSQEGSPVFAGFEGR ddPTM_HeLa_A486_30min_R1 1 SSSPTLTPSQEGSPVFAGFEGR 22 0 P0C860 P0C860 MSL3P1 Putative male-specific lethal-3 protein-like 2 1 0 S(0.329)S(0.329)S(0.329)PT(0.011)LT(0.001)PSQEGSPVFAGFEGR 59.9 0.0021951 0 15037 23548 15595 5729.7 23846 15960 20029 19566 17594 21518 TRUE FALSE FALSE 13982.98395 21681.97072 21633.80165 13339.03116 20855.01232 13991.01747 15017.53235 15111.24892 19119.06209 16129.75274 0.86690628 1.344222138 1.341235789 0.826982991 1.292953008 0.867404336 0.931045416 0.936855584 1.185328901 1 13.9774367 -5.25450953 24.99634313 1.00624871 1.200131464 0.167573625 0.181081371 913.1080113 3293623.207 0.048286798 0.081388143 5.57E-06 5.25450953 0.193882754 S(ph)SSPTSSLTQPIEMPTLSS(ph)SPTEERPTVGPGQQDNPLLK ddPTM_HeLa_A485_30min_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 0 S(0.192)S(0.192)S(0.192)PT(0.192)S(0.192)S(0.037)LT(0.002)QPIEMPT(0.019)LS(0.066)S(0.304)S(0.304)PT(0.304)EERPT(0.002)VGPGQQDNPLLK 128.39 2.44E-06 109860000 28194 29317 22428 32018 34508 26655 34722 48144 30287 49946 TRUE FALSE FALSE 34465.65803 32745.36813 30725.05051 33767.06227 31072.26236 28050.61458 27303.36105 36336.60851 36365.32309 37495.38139 0.919197425 0.873317377 0.819435604 0.90056591 0.828695727 0.748108528 0.728179313 0.969095584 0.9698614 1 15.19442528 -7.377535888 8.148160332 0.979450724 0.831758003 0.588010457 0.057040237 0.23580349 15.11169352 0.034613901 0.016518582 4.19E-08 7.377535888 -0.147692721 S(ph)SSPTSSLTQPIEMPTLSSS(ph)PTEERPTVGPGQQDNPLLK ddPTM_HeLa_A486_30min_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 0 S(0.175)S(0.175)S(0.175)PT(0.175)S(0.175)S(0.063)LT(0.063)QPIEMPTLS(0.002)S(0.12)S(0.438)PT(0.438)EERPT(0.002)VGPGQQDNPLLK 135.84 1.05E-06 221570000 43134 43212 28361 23293 45338 43809 58514 55981 36709 58621 TRUE FALSE FALSE 40110.52934 39787.72374 39343.13873 54227.28116 39651.28528 38404.291 43873.1783 43235.34836 39890.96568 43941.92004 0.912807845 0.905461657 0.895344097 1.234067176 0.902356685 0.873978446 0.998435623 0.983920327 0.907811166 1 15.42331029 -4.892390262 0.004827616 1.909345435 7.72E-05 0.01301403 0.100124119 182896.7036 170.9650299 32861.71376 34767.23196 1.28E-05 4.892390262 -1.909268223 S(ph)SSQIPEGFGLTSGGSNYSLAR ddPTM_HeLa_A486_30min_R1 1 SSSQIPEGFGLTSGGSNYSLAR 22 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 S(0.333)S(0.333)S(0.333)QIPEGFGLTSGGSNYSLAR 128.14 2.18E-06 170280000 116750 115790 84442 39368 121610 116000 129230 120520 92674 108180 TRUE FALSE FALSE 108566.4279 106614.3787 117140.2038 91650.69355 106356.5398 101689.0994 96895.28714 93080.22693 100707.0569 81091.02387 1.338821767 1.314749446 1.444552039 1.130219958 1.311569823 1.254011783 1.194895348 1.147848707 1.241901411 1 16.30725461 -12.32073644 0.049781354 1.50E-08 1.87666529 0.625129079 0.073126568 254.0177408 1.277240642 41.1330202 13.53904879 4.78E-13 12.32073644 1.876665275 S(ph)SSQPSSCCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_A485_30min_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.29)S(0.229)S(0.204)QPS(0.204)S(0.036)CCS(0.036)DPSKPGGNVEGATQSLAEQMR 125.93 1.57E-06 772390000 210930 166210 140690 295150 265370 189180 260850 223380 176710 372290 TRUE FALSE FALSE 257850.6508 185646.8137 192737.0856 311273.2971 238948.831 199085.1723 205117.2666 168595.7048 212174.0761 279484.9545 0.922592242 0.664246181 0.689615246 1.113739012 0.854961339 0.712328764 0.733911659 0.60323714 0.759160995 1 18.0924111 -6.25722536 23.66167357 0.735191528 0.84461459 0.064520875 0.149601957 422.3891444 2371712.394 0.051431733 0.049635394 5.53E-07 6.25722536 0.109423061 S(ph)SSQPSSCCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_A486_30min_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.333)S(0.333)S(0.333)QPSSCCSDPSKPGGNVEGATQSLAEQMR 116.35 6.67E-05 210320000 67492 71222 45338 26346 60127 77160 94743 82273 67363 92109 TRUE FALSE FALSE 62761.15933 65578.10933 62894.08779 61334.81945 52585.311 67640.78371 71037.29931 63541.23391 73202.07908 69044.30687 0.908998325 0.94979749 0.910923589 0.888339998 0.761616901 0.979672138 1.028865413 0.920296499 1.0602189 1 16.07523484 -6.493715524 24.956806 0.996926915 0.88746894 0.507813711 0.056254409 623.2007705 533313.015 0.020270118 0.01784496 3.21E-07 6.493715524 -0.109457975 S(ph)SSSDSIHSVR ddPTM_HeLa_A485_30min_R1 4 SSSSDSIHSVR 11 0 Q8WYL5-4;Q8WYL5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 S(0.331)S(0.331)S(0.331)S(0.008)DSIHSVR;S(0.328)S(0.328)S(0.328)S(0.016)DSIHSVR;S(0.331)S(0.331)S(0.331)S(0.006)DSIHSVR;S(0.329)S(0.329)S(0.329)S(0.014)DSIHSVR ;;; 124.47 4.75E-05 1836964000 812669 1399300 1345700 480922 1639120 1062150 1273720 1535590 1200030 1046816 TRUE FALSE FALSE 993444.4154 1562935.963 1843530.429 507193.5511 1475923.458 1117762.532 1001579.317 1158984.145 1440865.014 785864.0364 1.264142866 1.988812174 2.345864353 0.645396058 1.878090088 1.422335773 1.274494404 1.474789647 1.833478753 1 19.58392021 -5.237062043 24.99164276 1.401477504 1.878526897 0.227719726 0.421497079 1224.59639 1255454.533 0.111084897 0.192287279 5.79E-06 5.237062043 0.477049394 S(ph)SSSDSIHSVR ddPTM_HeLa_A486_30min_R1 4 SSSSDSIHSVR 11 0 Q8WYL5-4;Q8WYL5 Q8WYL5-4 SSH1 Protein phosphatase Slingshot homolog 1 1 0 S(0.329)S(0.329)S(0.329)S(0.012)DSIHSVR;S(0.329)S(0.329)S(0.329)S(0.012)DSIHSVR;S(0.332)S(0.332)S(0.332)S(0.005)DSIHSVR;S(0.32)S(0.32)S(0.32)S(0.04)DSIHSVR ;;; 137.62 1.13E-05 2097990000 1344470 1417536 1245982 55181.2 1740420 1012613 1235212 1165231 1254139 661105 TRUE FALSE FALSE 1250229.596 1305205.285 1728459.599 128464.6223 1522120.295 887687.1036 926148.8929 899933.3381 1362848.778 495560.0049 2.522862183 2.633798676 3.487891641 0.259231215 3.071515618 1.791280763 1.868893542 1.815992673 2.750118583 1 18.91870023 S(ph)SSSELLLTGPGAEEDPLPLIVQDQYVQEAR ddPTM_HeLa_A485_30min_R1 1 SSSSELLLTGPGAEEDPLPLIVQDQYVQEAR 31 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.25)S(0.25)S(0.25)S(0.25)ELLLTGPGAEEDPLPLIVQDQYVQEAR 58.98 0.011637 24734000 11796 10558 9918.2 12975 15711 10791 14027 18250 10383 14603 TRUE FALSE FALSE 14419.9795 11792.66626 13587.35491 13683.7914 14146.75768 11356.00007 11030.01686 13774.15889 12466.77286 10962.74085 1.315362618 1.075704189 1.239412214 1.248208964 1.290439852 1.035872345 1.006136788 1.256452111 1.137194889 1 13.42032092 -6.261999529 24.99997292 1.098097331 1.226150493 0.386578547 0.091621562 65.57246607 2926537.23 0.032277981 0.030211939 5.47E-07 6.261999529 0.128053162 S(ph)SSSGSDDYAYTQALLLHQR ddPTM_HeLa_A485_30min_R1 1 SSSSGSDDYAYTQALLLHQR 20 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 0 S(0.329)S(0.329)S(0.329)S(0.006)GS(0.007)DDYAYTQALLLHQR 116.24 9.02E-07 0 62440 84146 61301 43050 78158 69159 92694 87803 56847 69361 TRUE FALSE FALSE 76329.56258 93986.14273 83978.79085 45401.71249 70376.31509 72780.0583 72889.16966 66269.17658 68255.67147 52070.57919 1.465886567 1.804975942 1.612787723 0.871926397 1.351556218 1.397719392 1.399814843 1.272679843 1.310829888 1 15.66818083 -1 0.195145121 1.12281433 3.542770911 0.303458242 0.213238248 73.55230725 0.873938232 0.440919913 54.0501852 0.1 1 2.419956581 S(ph)SSSPELQTLQDILGDPGDKADVGR ddPTM_HeLa_A485_30min_R1 3 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 S(0.332)S(0.332)S(0.332)S(0.003)PELQTLQDILGDPGDKADVGR;S(0.306)S(0.306)S(0.306)S(0.081)PELQT(0.003)LQDILGDPGDKADVGR;S(0.345)S(0.345)S(0.303)S(0.007)PELQTLQDILGDPGDKADVGR ;; 117.49 7.45E-05 579364000 99531 106582 76210 136536 133838 113175 184673 196605 100804 185382 TRUE FALSE FALSE 121671.3276 119045.8378 104403.2504 143994.616 120512.6188 119100.668 145216.1049 148387.3155 121034.4382 139169.6791 0.874266064 0.855400677 0.750186758 1.034669454 0.865940193 0.855794658 1.043446431 1.066233079 0.869689712 1 17.0864854 -6.086770806 0.753749476 0.99419005 0.842134985 0.273343897 0.085594999 0.908893615 1.147261903 0.057570212 0.068194489 8.19E-07 6.086770806 -0.152055065 S(ph)SSSPELQTLQDILGDPGDKADVGR ddPTM_HeLa_A486_30min_R1 6 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 S(0.249)S(0.249)S(0.249)S(0.249)PELQT(0.003)LQDILGDPGDKADVGR;S(0.325)S(0.325)S(0.325)S(0.022)PELQT(0.004)LQDILGDPGDKADVGR;S(0.248)S(0.248)S(0.248)S(0.248)PELQT(0.007)LQDILGDPGDKADVGR;S(0.327)S(0.327)S(0.327)S(0.019)PELQT(0.001)LQDILGDPGDKADVGR;S(0.261)S(0.261)S(0.237)S(0.237)PELQT(0.004)LQDILGDPGDKADVGR;S(0.331)S(0.331)S(0.331)S(0.008)PELQTLQDILGDPGDKADVGR ;;;;; 112.9 0.00013397 704401000 240880 230096 121330.7 111142.3 224963 232089 313957 302859 189479.1 314519 TRUE FALSE FALSE 223995.5559 211862.355 168313.1964 258744.8912 196746.0428 203456.2189 235401.6379 233904.6171 205903.3009 235761.3952 0.950094292 0.898630392 0.713913303 1.097486257 0.834513397 0.862975122 0.998474062 0.992124333 0.873354608 1 17.84696798 -6.759351999 24.99731543 0.965331947 0.891699164 0.120974136 0.096429976 125.512421 1503093.569 0.037621747 0.027675308 1.74E-07 6.759351999 -0.073632783 S(ph)SSSPGGSLDLVSALEDYEEPFPVYQK ddPTM_HeLa_A485_30min_R1 1 SSSSPGGSLDLVSALEDYEEPFPVYQK 27 0 A0A1W2PR91;A0A1W2PQT1;C9J366;P0DPB3-2;P0DPB3;B3KU38-2;B3KU38;A0A1W2PPY3 A0A1W2PR91 IQCJ-SCHIP1 1 0 S(0.199)S(0.199)S(0.199)S(0.199)PGGS(0.199)LDLVS(0.006)ALEDYEEPFPVYQK 81.922 0.004293 12776000 18182 16243 15626 19843 23256 15165 23247 21861 17384 24375 TRUE FALSE FALSE 22226.52317 18142.47755 21406.70765 20926.97284 20940.55098 15959.01595 18280.08854 16499.55547 20872.80934 18298.76109 1.214646339 0.991459338 1.169844644 1.143627852 1.144369877 0.872136418 0.998979573 0.901676097 1.140667898 1 14.15945835 -6.237589348 24.73078447 0.977564721 1.127598683 0.434786716 0.085365654 647.6388659 671555.5894 0.026935122 0.026920187 5.79E-07 6.237589348 0.150033962 S(ph)SSSTGSEVGGQSTGSNHK ddPTM_HeLa_A485_30min_R1 1 SSSSTGSEVGGQSTGSNHK 19 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 S(0.349)S(0.349)S(0.067)S(0.067)T(0.059)GS(0.052)EVGGQS(0.051)T(0.002)GS(0.003)NHK 70.315 0.0013227 0 45104 49037 38100 55747 63235 49211 60131 67498 51920 84801 TRUE FALSE FALSE 55137.22919 54771.45058 52194.77547 58792.31745 56939.10137 51787.61187 47283.52062 50944.00967 62339.86776 63661.67135 0.866097732 0.860352068 0.819877555 0.923512 0.89440161 0.813481814 0.742731374 0.800230478 0.979237058 1 15.95813741 -7.801163849 8.494699865 0.991393338 0.840578644 0.604672025 0.048365501 0.228195164 42.75106037 0.051414829 0.0135854 1.58E-08 7.801163849 -0.150814694 S(ph)SSSTGSEVGGQSTGSNHK ddPTM_HeLa_A486_30min_R1 1 SSSSTGSEVGGQSTGSNHK 19 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 S(0.363)S(0.363)S(0.075)S(0.066)T(0.066)GS(0.066)EVGGQSTGSNHK 66.3 0.0062591 75869000 47031 43119 33075 7309.8 46496 51022 57330 51723 39982 35531 TRUE FALSE FALSE 43734.36977 39702.0934 45882.52578 17017.58382 40664.03812 44727.42439 42985.42763 39946.80201 43447.67195 26633.80633 1.642062318 1.490665394 1.722717557 0.638946743 1.526782827 1.679347812 1.613942337 1.499853288 1.631297885 1 14.700971 S(ph)SSTGNLLDKDDLAIPPPDYGAASR ddPTM_HeLa_A485_30min_R1 4 SSSTGNLLDKDDLAIPPPDYGAASR 25 1 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L3C6 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 S(0.332)S(0.332)S(0.332)T(0.003)GNLLDKDDLAIPPPDYGAASR;S(0.362)S(0.362)S(0.266)T(0.01)GNLLDKDDLAIPPPDYGAASR;S(0.351)S(0.351)S(0.29)T(0.008)GNLLDKDDLAIPPPDYGAASR;S(0.352)S(0.352)S(0.289)T(0.008)GNLLDKDDLAIPPPDYGAASR ;;; 184.44 1.25E-20 2561490000 1898480 1789650 1159010 2634860 2199490 2204820 3201060 2941120 1629870 3479740 TRUE FALSE FALSE 2320790.326 1998934 1587776.029 2778795.73 1980501.053 2320260.966 2517127.381 2219805.709 1956969.959 2612304.858 0.888407155 0.765199358 0.60780656 1.063733324 0.758143157 0.888204514 0.963565708 0.849749868 0.749135367 1 21.31689184 -5.253365947 24.99992925 0.886552462 0.754943877 0.248681697 0.112468239 935.6356468 2897251.9 0.030132228 0.051058263 5.58E-06 5.253365947 -0.131608585 S(ph)SSTGNLLDKDDLAIPPPDYGAASR ddPTM_HeLa_A486_30min_R1 4 SSSTGNLLDKDDLAIPPPDYGAASR 25 1 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L3C6 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 S(0.35)S(0.35)S(0.287)T(0.012)GNLLDKDDLAIPPPDYGAASR;S(0.347)S(0.347)S(0.295)T(0.012)GNLLDKDDLAIPPPDYGAASR;S(0.479)S(0.479)S(0.041)T(0.001)GNLLDKDDLAIPPPDYGAASR;S(0.372)S(0.372)S(0.215)T(0.04)GNLLDKDDLAIPPPDYGAASR ;;; 177.86 1.62E-15 2741740000 2590280 2916340 1768550 1761110 3388990 3462910 4327350 3695980 2673310 5107940 TRUE FALSE FALSE 2408714.748 2685238.597 2453379.923 4099953.082 2963911.273 3035691.372 3244601.26 2854486.037 2905034.663 3828878.577 0.629091443 0.701312027 0.640756784 1.070797363 0.774093828 0.792840857 0.847402495 0.745514902 0.758716842 1 21.86849048 S(ph)SSTSDILEPFTVER ddPTM_HeLa_A485_30min_R1 1 SSSTSDILEPFTVER 15 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 S(0.33)S(0.33)S(0.33)T(0.009)SDILEPFTVER 76.728 0.0063359 125620000 280560 354880 333720 310890 450590 345120 399310 460690 367770 460170 TRUE FALSE FALSE 342969.6041 396380.129 457176.9152 327873.1335 405727.6775 363189.9495 313994.1564 347705.0552 441578.0656 345458.0878 0.992796568 1.147404397 1.32339329 0.949096707 1.174462813 1.051328547 0.908921133 1.006504313 1.278239188 1 18.39815116 -6.41061534 7.822361522 1.039400832 1.120913839 0.06338724 0.12931252 0.797901447 50.14549477 0.046211286 0.040663963 3.88E-07 6.41061534 0.081513007 S(ph)SSVPHPFQVTLLR ddPTM_HeLa_A485_30min_R1 1 SSSVPHPFQVTLLR 14 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 S(0.551)S(0.393)S(0.056)VPHPFQVTLLR 116.58 0.00015437 209980000 108330 108180 97346 97607 140560 98857 153680 128520 86300 127730 TRUE FALSE FALSE 132427.6348 120830.71 133358.3363 102939.0233 126565.3529 104032.9997 120845.0125 97000.26849 103619.6184 95889.2617 1.3810476 1.260106792 1.390753604 1.073519823 1.319911642 1.084928571 1.26025595 1.011586353 1.080617543 1 16.54908164 -5.174693214 0.227345387 0.963288419 1.567710834 0.576125489 0.093872714 5.3059893 0.357537528 0.1706932 0.910905162 6.69E-06 5.174693214 0.604422415 S(ph)SSVPHPFQVTLLR ddPTM_HeLa_A486_30min_R1 1 SSSVPHPFQVTLLR 14 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 S(0.478)S(0.478)S(0.043)VPHPFQVTLLR 76.526 0.0021152 0 65699 84482 64649 21827 82553 74128 91055 88845 71491 59425 TRUE FALSE FALSE 61093.83937 77787.33864 89682.82416 50814.35908 72198.43296 64982.84104 68272.07592 68616.93297 77687.89744 44544.59321 1.371520873 1.746280144 2.013326819 1.140752568 1.620812488 1.45882668 1.532668075 1.540409914 1.744047747 1 15.44296271 -10.23164062 3.515024392 0.998860313 1.575265077 0.373161185 0.223294987 38535868.02 60863852.86 480360.3865 0.054718078 5.87E-11 10.23164062 0.576404764 S(ph)SSVTSIDKESR ddPTM_HeLa_A485_30min_R1 1 SSSVTSIDKESR 12 1 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 S(0.476)S(0.29)S(0.228)VT(0.005)SIDKESR 107.61 0.00019505 0 166420 196440 142010 181590 235340 245880 328440 365160 191600 334270 TRUE FALSE FALSE 203439.5549 219411.9492 194545.4085 191509.8019 211908.7233 258753.8966 258266.1109 275603.9375 230052.3625 250942.6408 0.810701419 0.874351001 0.775258473 0.763161658 0.844450838 1.031127654 1.029183841 1.098274636 0.916752776 1 17.93699811 -6.204345427 4.281247296 1.022789965 0.808567187 0.800351314 0.050438709 0.093954051 3.586409907 0.017214651 0.016897066 6.25E-07 6.204345427 -0.214222777 S(ph)ST(ph)PPRQS(ph)PSR ddPTM_HeLa_A485_30min_R1 3 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.987)S(0.015)T(0.998)PPRQS(0.727)PS(0.274)R;S(0.982)S(0.026)T(0.991)PPRQS(0.669)PS(0.332)R;S(0.998)S(0.143)T(0.859)PPRQS(0.987)PS(0.013)R ;; 160.5 4.55E-07 2881680000 614040 623630 494620 926570 769430 584640 941690 799690 496070 1143530 TRUE FALSE FALSE 750631.0796 696558.1036 677600.5209 977186.1729 692822.8476 615250.8464 740490.2386 603564.7736 595626.6988 858469.0161 0.874383426 0.811395741 0.789312728 1.13828939 0.807044674 0.716683811 0.862570721 0.703071121 0.69382434 1 19.71140654 -5.979489427 24.99977092 0.7787677 0.899136627 0.146147101 0.122610338 424.3198798 517189.32 0.037768373 0.042820928 1.05E-06 5.979489427 0.120368927 S(ph)ST(ph)PPRQS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.998)S(0.004)T(0.997)PPRQS(0.889)PS(0.113)R;S(0.999)S(0.003)T(0.998)PPRQS(0.95)PS(0.05)R;S(0.99)S(0.02)T(0.989)PPRQS(0.986)PS(0.015)R;S(0.999)S(0.002)T(0.997)PPRQS(0.815)PS(0.186)R ;;; 166.79 2.96E-07 6589910000 2354790 2391960 1287090 1435420 2164740 2482040 3185770 2804100 1904090 3931330 TRUE FALSE FALSE 2189731.381 2202412.378 1785485.717 3341730.302 1893218.124 2175831.14 2388656.65 2165667.643 2069138.054 2946899.379 0.743062826 0.747365992 0.605886217 1.133981813 0.642444101 0.738345922 0.810566071 0.734897044 0.702140721 1 21.49076637 -10.10496116 3.879339194 1.000065231 0.764398803 0.215861573 0.135975264 60452788.19 114067780.3 61422.94636 0.0328912 7.85E-11 10.10496116 -0.235666428 S(ph)ST(ph)PRES(ph)PCGK ddPTM_HeLa_A486_30min_R1 1 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 3 0 S(0.507)S(0.507)T(0.986)PRES(1)PCGK 124.81 0.0003794 399650000 810280 850680 358700 544990 728010 975870 1286900 1152900 610410 1343500 TRUE FALSE FALSE 753483.5563 783269.0187 497598.2463 1268764.262 636696.1974 855477.0813 964904.0086 890409.8376 663320.8303 1007078.855 0.748187247 0.777763345 0.49410058 1.259845995 0.632220798 0.84946385 0.958121604 0.88415106 0.658658284 1 19.94174522 S(ph)STDFSELEQPR ddPTM_HeLa_A486_30min_R1 1 SSTDFSELEQPR 12 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(0.497)S(0.497)T(0.005)DFSELEQPR 92.925 0.0018597 110960000 66112 73000 58923 29725 87034 71541 79477 78770 60005 70041 TRUE FALSE FALSE 61477.8902 67215.21414 81739.56361 69201.30222 76117.38416 62714.9988 59591.01398 60835.79054 65206.28171 52502.27771 1.170956631 1.28023425 1.556876524 1.318062858 1.449792037 1.194519581 1.13501769 1.158726691 1.241970531 1 15.68009239 -6.412966061 5.319595833 1.149327326 1.359458322 0.476217679 0.110490094 0.218704965 8.901359237 0.040355559 0.03523431 3.86E-07 6.412966061 0.210130996 S(ph)STGPEPPAPTPLLAER ddPTM_HeLa_A485_30min_R1 3 SSTGPEPPAPTPLLAER 17 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.906)S(0.093)TGPEPPAPTPLLAER;S(0.925)S(0.074)T(0.001)GPEPPAPTPLLAER;S(0.919)S(0.079)T(0.002)GPEPPAPTPLLAER ;; 184 1.18E-17 297480000 368560 398690 319581 340380 337962 313221 374070 352590 278647 381180 TRUE FALSE FALSE 450544.9005 445313.3274 437807.3108 358974.0975 304313.3166 329620.7672 294146.8886 266116.7497 334568.897 286158.8411 1.574457384 1.556175324 1.529945079 1.254457476 1.063441952 1.151880424 1.027914733 0.929961656 1.169171974 1 18.12645666 -5.42881353 1.826170211 1.050163383 1.575508576 0.920177514 0.065454706 0.088521029 0.584067026 0.021119634 0.036946992 3.73E-06 5.42881353 0.525345193 S(ph)STGPEPPAPTPLLAER ddPTM_HeLa_A486_30min_R1 4 SSTGPEPPAPTPLLAER 17 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.922)S(0.077)T(0.001)GPEPPAPTPLLAER;S(0.473)S(0.473)T(0.054)GPEPPAPTPLLAER;S(0.5)S(0.5)TGPEPPAPTPLLAER;S(0.498)S(0.498)T(0.004)GPEPPAPTPLLAER ;;; 283.07 9.78E-60 394575000 865250 948990 543960 214250 648618 757620 754620 698200 768240 970170 TRUE FALSE FALSE 804600.4432 873788.5762 754595.8798 498784.8276 567262.2823 664152.5473 565806.0944 539235.1016 834831.6618 727233.1173 1.106385867 1.201524732 1.037625848 0.685866493 0.780028121 0.913259492 0.778025754 0.741488649 1.147956057 1 19.47205837 -5.036674328 6.076435334 0.84815091 1.147401099 0.452392435 0.130077267 0.149646773 16.24687215 0.034502436 0.063067741 9.19E-06 5.036674328 0.29925019 S(ph)STPEEVK ddPTM_HeLa_A486_30min_R1 1 SSTPEEVK 8 0 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 S(0.715)S(0.264)T(0.021)PEEVK 183.27 6.96E-06 921800000 2502000 2464900 1082500 1458000 2088200 3148600 3753700 3514900 2031200 4070500 TRUE FALSE FALSE 2326622.72 2269572.347 1501672.99 3394297.683 1826278.484 2760157.745 2814484.557 2714634 2207266.051 3051220.305 0.762522036 0.743824477 0.492154889 1.112439399 0.598540355 0.904607819 0.922412765 0.88968797 0.723404353 1 21.54095492 -5.249089573 24.99623083 0.865355296 0.673932897 0.296538482 0.148890764 1046.568554 2118270.006 0.038806366 0.066605413 5.64E-06 5.249089573 -0.191422399 S(ph)STPEMPAVSAFFSLAALAEVAAMENVHR ddPTM_HeLa_A485_30min_R1 1 SSTPEMPAVSAFFSLAALAEVAAMENVHR 29 0 C9JA69;Q8WY36-2;Q8WY36;H7C1Q0 C9JA69 BBX HMG box transcription factor BBX 1 0 S(0.333)S(0.333)T(0.333)PEMPAVS(0.001)AFFSLAALAEVAAMENVHR 78.991 0.0019147 184060000 2593.8 3144.3 2567.3 2751.9 2706.7 2665.4 2682.6 3876.9 2006.6 3180.2 TRUE FALSE FALSE 3170.781861 3511.998533 3517.051104 2902.229329 2437.211444 2804.956223 2109.440595 2926.084196 2409.306214 2387.434667 1.328112515 1.471034404 1.473150722 1.215626701 1.020849482 1.174882924 0.883559506 1.225618542 1.009161108 1 11.22124554 -5.476867748 3.294162993 1.062170593 1.427278845 0.74340828 0.097534471 0.118645094 2.584471141 0.027752367 0.041152429 3.34E-06 5.476867748 0.365108252 S(ph)STPLHSPSPIR ddPTM_HeLa_A485_30min_R1 5 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.259)S(0.259)T(0.259)PLHS(0.212)PS(0.01)PIR;S(0.333)S(0.333)T(0.333)PLHSPSPIR;S(0.333)S(0.333)T(0.333)PLHS(0.001)PS(0.001)PIR;S(0.367)S(0.367)T(0.266)PLHSPSPIR;S(0.327)S(0.327)T(0.327)PLHS(0.009)PS(0.009)PIR ;;;; 162.48 2.08E-10 1500876000 395297 588379 587488 416883 777367 551129 647005 689224 559996 578362 TRUE FALSE FALSE 483229.4539 657184.8058 804824.2586 439656.2627 699969.612 579985.2622 508767.0962 520190.7333 672382.0606 434186.9974 1.112952384 1.513598541 1.853635101 1.012596566 1.612138586 1.335796018 1.171769535 1.198079944 1.548600176 1 18.727957 -6.521311641 23.19784726 1.247213809 1.432126408 0.108319679 0.255860001 58.27956897 862791.3046 0.094707353 0.074604823 3.01E-07 6.521311641 0.184912599 S(ph)STPLHSPSPIR ddPTM_HeLa_A486_30min_R1 3 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.333)S(0.333)T(0.333)PLHSPSPIR;S(0.37)S(0.37)T(0.261)PLHSPSPIR;S(0.361)S(0.361)T(0.254)PLHS(0.024)PS(0.001)PIR ;; 166.86 1.51E-10 3789160000 1298930 1281560 1075240 247770 1410380 1256970 1541830 1483540 1137890 1233360 TRUE FALSE FALSE 1207881.715 1180004.518 1491601.724 576821.0816 1233476.989 1101897.821 1156047.826 1145770.327 1236523.221 924518.6282 1.306497974 1.276344773 1.613382011 0.623915045 1.334182948 1.191861135 1.250432161 1.239315567 1.337477887 1 19.81834286 -11.33351353 1.87606737 6.61E-05 1.2367548 0.087433542 0.233601946 2766075.865 309683.2495 11712975.18 0.057143534 4.64E-12 11.33351353 1.236688674 S(ph)STPPGESYFGVSSLQLK ddPTM_HeLa_A485_30min_R1 2 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.333)S(0.333)T(0.333)PPGESYFGVSSLQLK;S(0.353)S(0.353)T(0.294)PPGESYFGVSSLQLK ; 170.91 2.49E-12 4904051000 1299384 1264601 978235 1799530 2068620 1496866 2251950 2312410 1370202 2442120 TRUE FALSE FALSE 1588427.488 1412485.086 1340124.834 1897833.767 1862660.929 1575239.589 1770802.486 1745287.822 1645188.973 1833344.428 0.86640975 0.770441748 0.730972759 1.03517579 1.015990722 0.859216394 0.96588642 0.951969415 0.897370373 1 20.80604642 -5.256975139 24.99316091 0.957078763 0.787391449 0.642141192 0.058627706 246.6026984 1380605.812 0.016543934 0.027440303 5.53E-06 5.256975139 -0.169687314 S(ph)STPPGESYFGVSSLQLK ddPTM_HeLa_A486_30min_R1 2 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.333)S(0.333)T(0.333)PPGESYFGVSSLQLK;S(0.333)S(0.333)T(0.333)PPGESYFGVSSLQLK ; 140.22 9.78E-07 3283040000 646853 603318 355420 270889 601103 657729 810730 769360 496806 765270 TRUE FALSE FALSE 601511.9451 555508.8844 493048.1425 630643.282 525707.0567 576585.0833 607876.779 594193.523 539869.5441 573641.4109 1.04858529 0.968390486 0.85950584 1.099368473 0.91643847 1.005131555 1.059680782 1.035827455 0.941127216 1 19.12978965 -6.503617407 24.09535782 1.015039016 0.976285025 0.04357594 0.067655265 1438.146081 1799081.744 0.023721506 0.020576773 3.14E-07 6.503617407 -0.038753992 S(ph)STPPLHVHVDENTPVHVHIK ddPTM_HeLa_A485_30min_R1 1 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-3;Q5BJF6-4;Q5BJF6-9 Q5BJF6-3 ODF2 Outer dense fiber protein 2 1 0 S(0.333)S(0.333)T(0.333)PPLHVHVDENTPVHVHIK 185.62 1.12E-19 2054700000 125510 170880 180690 130880 205220 143550 185390 204990 163390 181110 TRUE FALSE FALSE 153429.2665 190862.9295 247534.7501 138029.643 184787.5762 151066.056 145779.912 154715.8811 196180.8743 135962.6101 1.128466616 1.403789832 1.820608989 1.015202951 1.359105831 1.11108529 1.072205895 1.137929619 1.44290312 1 17.05285044 -5.299070504 24.99995659 1.170651043 1.44623928 0.292912558 0.204979714 711.8905658 472937.6832 0.057516508 0.085313095 5.02E-06 5.299070504 0.275588237 S(ph)STPPLHVHVDENTPVHVHIK ddPTM_HeLa_A486_30min_R1 2 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-3;Q5BJF6-4;Q5BJF6-9 Q5BJF6-3 ODF2 Outer dense fiber protein 2 1 0 S(0.457)S(0.457)T(0.086)PPLHVHVDENTPVHVHIK;S(0.333)S(0.333)T(0.333)PPLHVHVDENTPVHVHIK ; 294.7 2.02E-87 2020200000 1394770 1177190 814900 392705 1332250 1303530 1387800 1449920 1034640 1433870 TRUE FALSE FALSE 1297003.826 1083905.177 1130451.104 914237.0862 1165146.782 1142713.722 1040557.761 1119804.868 1124323.428 1074819.619 1.206717669 1.0084531 1.051758903 0.85059583 1.08403937 1.063167904 0.968123156 1.041853766 1.046057783 1 20.03566313 -4.260679486 24.11516771 1.012552757 1.206717758 0.461332834 0.062903817 35.25014773 1118303.578 0.015502737 0.090651441 5.49E-05 4.260679486 0.194165001 S(ph)STPPRQSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.713)S(0.112)T(0.176)PPRQS(0.057)PS(0.943)R 136.02 8.84E-05 13097000000 302580 359300 313860 351780 442970 311100 444610 448590 343260 430090 TRUE FALSE FALSE 369887.8771 401317.0095 429969.8748 370996.8506 398866.3514 327388.7149 349615.4414 338572.5991 412149.1334 322876.4782 1.145601808 1.242942848 1.331685347 1.149036476 1.235352769 1.013975118 1.082814838 1.048613392 1.276491665 1 18.30062282 -6.244103474 24.58586183 1.087319579 1.224306813 0.385409001 0.086120979 711.9270966 1009658.515 0.028066635 0.027994333 5.70E-07 6.244103474 0.136987234 S(ph)STPSHGQTTATEPTPAQK ddPTM_HeLa_A485_30min_R1 1 SSTPSHGQTTATEPTPAQK 19 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 S(0.333)S(0.333)T(0.333)PSHGQTTATEPTPAQK 155.16 4.94E-13 0 191980 220420 172280 175250 278040 217930 304720 284790 182930 295240 TRUE FALSE FALSE 234685.2887 246196.2016 236013.5412 184823.4637 250357.3613 229340.4778 239614.0827 214944.806 219642.3731 221642.1015 1.058847968 1.110782653 1.064840748 0.833882473 1.129556883 1.034733366 1.081085593 0.969783288 0.990977669 1 17.75787243 -5.017223216 24.99501366 1.008997703 1.085564447 0.170975727 0.073723827 1258.90511 1826978.899 0.01992362 0.035598923 9.61E-06 5.017223216 0.076566744 S(ph)STPTPR ddPTM_HeLa_A486_30min_R1 1 SSTPTPR 7 0 A0A669KBK8;Q04724;F6T2C8;A0A669KAE5 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 S(0.332)S(0.332)T(0.332)PT(0.003)PR 65.252 0.027363 99696000 277730 138960 220640 69344 156050 379230 154290 170310 385240 300000 TRUE FALSE FALSE 258262.5612 127948.3035 306077.7169 161436.3365 136476.7539 332444.4583 115685.0101 131534.1308 418632.9134 224878.0473 1.148456082 0.568967514 1.361083132 0.71788393 0.606892293 1.4783322 0.51443443 0.584913167 1.861599735 1 17.77878331 -7.752349008 24.99937302 1.430799981 0.87301607 0.255762064 0.380864762 224.7681958 618145.411 0.252432662 0.092386193 1.77E-08 7.752349008 -0.557783911 S(ph)STSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR ddPTM_HeLa_A485_30min_R1 2 SSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR 39 0 D6R9Y1;D6RA77;Q9BPZ3 D6R9Y1 PAIP2 Polyadenylate-binding protein-interacting protein 2 1 0 S(0.25)S(0.25)T(0.25)S(0.25)PSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR;S(0.189)S(0.189)T(0.189)S(0.189)PS(0.104)IINEDVIINGHS(0.138)HEDDNPFAEYMWMENEEEFNR ; 232.55 5.70E-41 109737000 20625.7 25343 19823 23023 28679 20448 27685 30426 24205.2 26570 TRUE FALSE FALSE 25213.81581 28306.6434 27156.3526 24280.68819 25823.61806 21518.62566 21769.87358 22963.97579 29062.96162 19946.58798 1.264066608 1.419122078 1.361453529 1.217285293 1.294638365 1.07881236 1.091408395 1.151273381 1.457039251 1 14.28385436 -5.620859882 1.57335741 1.167876452 1.353504155 0.279353596 0.123350399 0.514583718 2.615895803 0.043646878 0.067258981 2.39E-06 5.620859882 0.185627704 S(ph)STSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR ddPTM_HeLa_A486_30min_R1 2 SSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNR 39 0 D6R9Y1;D6RA77;Q9BPZ3 D6R9Y1 PAIP2 Polyadenylate-binding protein-interacting protein 2 1 0 S(0.235)S(0.235)T(0.235)S(0.235)PS(0.025)IINEDVIINGHS(0.034)HEDDNPFAEYMWMENEEEFNR;S(0.227)S(0.227)T(0.227)S(0.227)PS(0.088)IINEDVIINGHS(0.002)HEDDNPFAEYMWMENEEEFNR ; 167.51 1.27E-14 146390000 20611.2 22669.5 17747.2 10648 19889.1 20734.1 24110.7 25258.4 24588.1 25365.5 TRUE FALSE FALSE 19166.46132 20873.08626 24619.39113 24789.08212 17394.42362 18176.13755 18077.94784 19507.61371 26719.41631 19013.8137 1.008028248 1.097785357 1.294816049 1.303740665 0.914830864 0.955943812 0.950779687 1.025970593 1.405263391 1 14.21476031 -4.266883782 7.160254238 1.103014693 1.006892503 0.03106174 0.162853985 0.494867123 211.5106835 0.043140735 0.232681678 5.41E-05 4.266883782 -0.09612219 S(ph)STVTEAPIAVVTSR ddPTM_HeLa_A485_30min_R1 1 SSTVTEAPIAVVTSR 15 0 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 S(0.984)S(0.016)T(0.001)VTEAPIAVVTSR 140.27 6.24E-08 59216000 48249 53001 50945 53074 65359 38017 54843 55196 42754 48946 TRUE FALSE FALSE 58981.82359 59199.0059 69791.6755 55973.29823 58851.62847 40007.51133 43125.34502 41659.09446 51334.33564 36744.66298 1.605180693 1.611091274 1.899369047 1.523304167 1.601637454 1.088797885 1.173649219 1.13374545 1.397055558 1 15.1652471 -6.19644261 4.883767153 1.167871015 1.659486983 0.777320363 0.131008338 0.103452855 4.937650035 0.044064257 0.04364948 6.36E-07 6.19644261 0.491615968 S(ph)SVKTPESIVPIAPELQPSTSR ddPTM_HeLa_A485_30min_R1 1 SSVKTPESIVPIAPELQPSTSR 22 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.333)S(0.333)VKT(0.333)PESIVPIAPELQPSTSR 101.73 0.00022747 182890000 131720 133800 106390 196760 206090 152620 258570 248390 126820 293800 TRUE FALSE FALSE 161020.6596 149446.7461 145748.0883 207508.5006 185570.956 160610.9472 203324.4072 187471.963 152271.6107 220561.067 0.730050239 0.677575368 0.660806054 0.940821077 0.841358625 0.728192647 0.92185085 0.849977585 0.690382998 1 17.75081863 -5.792666009 0.039249335 1.562338894 2.36E-15 0.33932871 0.094491902 258.3918335 2.998141002 50.88556354 68.28292371 1.61E-06 5.792666009 -1.562338894 S(ph)T(ph)DT(ph)SLKDGLFHEFK ddPTM_HeLa_A485_30min_R1 1 STDTSLKDGLFHEFK 15 1 Q96T58;A0A669KB49;F6WRY4;H0Y5U7 Q96T58 SPEN Msx2-interacting protein 3 0 S(0.739)T(0.761)DT(0.761)S(0.739)LKDGLFHEFK 48.848 0.02953 140260000 51117 36821 38221 62687 67775 59418 90145 84241 53221 94637 TRUE FALSE FALSE 62487.8003 41126.89565 52360.53841 66111.43208 61027.08303 62529.0346 70884.78433 63580.76267 63901.96653 71045.73756 0.879543269 0.578879143 0.736997605 0.93054748 0.858983031 0.88012366 0.997734512 0.894927195 0.899448281 1 16.11646048 -5.228903427 5.648752258 0.917602291 0.714154248 0.538677369 0.08063518 0.135544343 12.93237249 0.021224788 0.036338189 5.90E-06 5.228903427 -0.203448043 S(ph)T(ph)NKVNR ddPTM_HeLa_A485_30min_R1 2 STNKVNR 7 1 Q9Y3R5-2;Q9Y3R5 Q9Y3R5-2 DOPEY2 Protein dopey-2 2 0 S(1)T(1)NKVNR;S(1)T(1)NKVNR ; 70.268 0.018123 1170890000 284640 394690 389550 399310 572550 322420 482510 503160 324380 471420 TRUE FALSE FALSE 347957.186 440845.5622 533660.7555 421123.2942 515544.9117 339301.4126 379417.7968 379759.2211 389480.0906 353903.6698 0.983197451 1.245665416 1.507926594 1.18993763 1.456737965 0.958739458 1.072093423 1.073058161 1.100525719 1 18.4329972 -6.274598754 24.96235982 1.047400114 1.282995828 0.415586874 0.139610379 803.347415 1523886.291 0.049474454 0.043891683 5.31E-07 6.274598754 0.235595715 S(ph)T(ph)TKSPGPSRR ddPTM_HeLa_A485_30min_R1 1 STTKSPGPSRR 11 2 O15075-2;O15075;Q5VZY9 O15075-2;Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 2 0 S(0.988)T(0.556)T(0.455)KSPGPSRR 64.65 0.017006 251900000 112730 119410 99194 147480 175560 151610 257300 180300 88244 175920 TRUE FALSE FALSE 137806.3996 133373.9608 135889.9884 155536.459 158080.63 159548.0652 202325.7531 136081.1423 105953.7614 132066.3816 1.043463128 1.009900924 1.028952159 1.177714246 1.196978581 1.208089926 1.532000428 1.030399566 0.802276553 1 17.01090374 -5.254946411 22.56940681 1.158743604 1.025684903 0.061812862 0.176888065 353.3476974 1228207.985 0.051354965 0.086010791 5.56E-06 5.254946411 -0.133058701 S(ph)T(ph)TKSPGPSRR ddPTM_HeLa_A486_30min_R1 1 STTKSPGPSRR 11 2 O15075-2;O15075;Q5VZY9 O15075-2;Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 2 0 S(0.985)T(0.55)T(0.465)KSPGPSRR 53.754 0.03475 174190000 101650 105640 66455 62124 80536 117090 195470 122790 62407 107090 TRUE FALSE FALSE 94524.85992 97268.70167 92188.15573 144627.8116 70434.42391 102644.6263 146561.3385 94833.39749 67816.48901 80273.96696 1.177528201 1.211709167 1.148419085 1.801677643 0.877425479 1.278678881 1.825764243 1.181371758 0.844812977 1 16.29264457 -7.566925877 6.550073879 0.943687051 1.331198305 0.256664379 0.275568094 0.28745972 30.56135657 0.189616942 0.070760728 2.71E-08 7.566925877 0.387511254 S(ph)TAALEEDAQILK ddPTM_HeLa_A485_30min_R1 4 STAALEEDAQILK 13 0 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 S(0.984)T(0.016)AALEEDAQILK;S(0.995)T(0.005)AALEEDAQILK;S(0.991)T(0.009)AALEEDAQILK;S(0.991)T(0.009)AALEEDAQILK ;;; 298.78 9.44E-58 883440000 1300940 1173750 774360 1332030 1416890 1225890 1724730 1912830 933520 1693920 TRUE FALSE FALSE 1590329.615 1311009.852 1060827.988 1404795.426 1275819.457 1290075.705 1356227.346 1443705.443 1120868.901 1271656.918 1.25059644 1.030946188 0.834209269 1.104696877 1.003273319 1.014484085 1.066504122 1.135294766 0.881423979 1 20.27827807 -4.270349136 5.423314986 1.010885774 1.258552757 0.413070782 0.086973516 0.138450378 15.17722774 0.021360942 0.126000957 5.37E-05 4.270349136 0.247666983 S(ph)TAALEEDAQILK ddPTM_HeLa_A486_30min_R1 5 STAALEEDAQILK 13 0 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 S(0.99)T(0.01)AALEEDAQILK;S(0.991)T(0.009)AALEEDAQILK;S(0.993)T(0.007)AALEEDAQILK;S(0.991)T(0.009)AALEEDAQILK;S(0.993)T(0.007)AALEEDAQILK ;;;; 311.66 2.50E-68 1103852000 1588830 1577130 899409 699609 1476850 1504060 1891530 1870480 1076287 1579960 TRUE FALSE FALSE 1477461.222 1452152.475 1247684.252 1628725.108 1291609.702 1318504.369 1418249.187 1444612.536 1169580.424 1184327.732 1.24751045 1.226140734 1.053495766 1.375231757 1.090584698 1.113293503 1.197514125 1.219774305 0.98754795 1 20.17563693 -7.766126729 24.9981205 0.993773839 1.187563225 0.453788729 0.086261461 110.1398278 587351.7199 0.072278651 0.02106795 1.71E-08 7.766126729 0.193789387 S(ph)TDFVFIPPEGK ddPTM_HeLa_A485_30min_R1 2 STDFVFIPPEGK 12 0 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 S(0.5)T(0.5)DFVFIPPEGK;S(0.792)T(0.208)DFVFIPPEGK ; 143.76 2.14E-07 35593000 186309 201145 84672 113668 112061 141240 144998 158935 97313 188962 TRUE FALSE FALSE 227752.7943 224667.158 115995.6963 119877.395 100903.8134 148635.108 114017.9928 119955.942 116842.8265 141857.251 1.605506893 1.583755194 0.817693107 0.845056521 0.711305292 1.047779419 0.803751602 0.845610226 0.823664816 1 17.11408037 -4.759176214 24.99991764 0.854931602 1.594631372 0.91063949 0.091797796 13.62838683 150535.6093 0.02270811 0.054415499 1.74E-05 4.759176214 0.73969977 S(ph)TDFVFIPPEGK ddPTM_HeLa_A486_30min_R1 2 STDFVFIPPEGK 12 0 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 S(0.5)T(0.5)DFVFIPPEGK;S(0.816)T(0.184)DFVFIPPEGK ; 90.759 0.0011314 10167000 115697 87546 35677 18644.9 44739 63258 69407 60989 61071 117073 TRUE FALSE FALSE 107587.2378 80608.53612 49492.08986 43406.26946 39127.41745 55453.87112 52040.63449 47103.13608 66364.68345 87757.15878 1.225965371 0.91854086 0.563966411 0.49461799 0.445860121 0.631901396 0.593007285 0.536744087 0.756230994 1 16.4212292 -4.511549901 2.678999953 0.598614124 1.225388321 0.60460212 0.151800448 0.184590736 2.365762409 0.038172806 0.198732407 3.08E-05 4.511549901 0.626774197 S(ph)TDSSSVSGSLQQETK ddPTM_HeLa_A485_30min_R1 2 STDSSSVSGSLQQETK 16 0 Q9H8G2;A0A3B3ISJ3 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 S(0.929)T(0.071)DSSSVSGSLQQETK;S(0.925)T(0.075)DSSSVSGSLQQETK ; 324.49 4.93E-79 583410000 415550 361030 260270 525430 504160 382810 599540 611290 319180 631270 TRUE FALSE FALSE 507987.6639 403249.318 356554.7037 554132.9104 453964.0602 402853.3397 471443.3812 461370.169 383236.4983 473906.0067 1.071916491 0.850905691 0.752374308 1.169288641 0.957920039 0.850070128 0.994803557 0.97354784 0.808676178 1 18.85424142 -4.237137666 22.67023622 0.930336372 1.07191709 0.126039675 0.113118931 4247.867802 3962469.131 0.028318383 1.425565234 5.79E-05 4.237137666 0.141580718 S(ph)TDSSSVSGSLQQETK ddPTM_HeLa_A486_30min_R1 2 STDSSSVSGSLQQETK 16 0 Q9H8G2;A0A3B3ISJ3 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 S(0.947)T(0.052)DS(0.002)SSVSGSLQQETK;S(0.499)T(0.499)DS(0.001)SSVSGSLQQETK ; 435.18 2.12E-172 662200000 461970 438400 260240 193845 463040 512590 616720 598960 362080 664640 TRUE FALSE FALSE 429588.2886 403659.5874 361011.8975 451280.9564 404961.2055 449351.8574 462410.133 462589.8832 393465.3859 498209.8179 0.862263796 0.810220058 0.724618192 0.905805025 0.812832648 0.901932963 0.928143357 0.928504149 0.789758395 1 18.92639393 -6.006839102 1.321963477 0.907541136 0.809269903 0.29630964 0.065168469 0.56342395 2.03876658 0.027583898 0.031005239 9.84E-07 6.006839102 -0.098271232 S(ph)TECLLLSLLHR ddPTM_HeLa_A485_30min_R1 1 STECLLLSLLHR 12 0 H0YES2;Q5TB30 H0YES2 DEPDC1 DEP domain-containing protein 1A 1 0 S(0.5)T(0.5)ECLLLSLLHR 104.87 0.00042592 16538000 2105.1 0 2094.4 783.16 1039.7 0 1725.7 2313.6 1058.9 2220.1 TRUE FALSE FALSE 2573.372232 0 2869.205715 825.9420477 936.1838174 0 1356.990097 1746.185972 1271.411517 1666.669928 1.544020318 0 1.721520061 0.495564259 0.561709191 0 0.814192465 1.047709533 0.762845418 1 10.7027527 S(ph)TECLLLSLLHR ddPTM_HeLa_A486_30min_R1 2 STECLLLSLLHR 12 0 H0YES2;Q5TB30 H0YES2 DEPDC1 DEP domain-containing protein 1A 1 0 S(0.5)T(0.5)ECLLLSLLHR;S(0.5)T(0.5)ECLLLSLLHR ; 85.288 0.0021969 41339000 40661 51812 42447 8132.8 56693 44803 55414 49516 41903 39698 TRUE FALSE FALSE 37810.87387 47706.22842 58883.61517 18933.56941 49582.0353 39275.66138 41548.83109 38242.28773 45535.18578 29757.36241 1.270639291 1.603173956 1.978791479 0.636265041 1.666210688 1.319863664 1.396253825 1.285137009 1.530215788 1 14.86095904 -12.60179748 0.223838967 5.91E-13 1.465408777 0.116871452 0.33010931 174.8128582 3.074015894 81.72720209 0.618685812 2.50E-13 12.60179748 1.465408777 S(ph)TELLLGVK ddPTM_HeLa_A485_30min_R1 4 STELLLGVK 9 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 S(0.997)T(0.003)ELLLGVK;S(0.995)T(0.005)ELLLGVK;S(0.997)T(0.003)ELLLGVK;S(0.984)T(0.016)ELLLGVK ;;; 203.94 6.95E-10 224039000 622001 549165 402168 664140 515399 510318 648162 578900 443221 828014 TRUE FALSE FALSE 760362.9766 613385.0696 550946.6788 700420.2865 464084.0659 537037.4614 509676.8937 436923.8673 532171.3892 621605.3483 1.223224637 0.986775727 0.88632873 1.126792568 0.746589564 0.863952446 0.819936468 0.702895927 0.856124212 1 19.24563939 -1 0.479795556 0.824542401 11.49059578 0.485940167 0.111333964 79.65268684 0.89521184 0.063261376 847.0115072 0.1 1 10.66605337 S(ph)TELLLGVK ddPTM_HeLa_A486_30min_R1 4 STELLLGVK 9 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 S(0.994)T(0.006)ELLLGVK;S(0.99)T(0.01)ELLLGVK;S(0.996)T(0.004)ELLLGVK;S(0.997)T(0.003)ELLLGVK ;;; 189.72 1.67E-08 535885000 784260 763740 338869 251261 457335 705360 715080 616710 585679 1033620 TRUE FALSE FALSE 729287.4239 703218.4609 470088.152 584948.306 399971.7798 618339.8548 536159.4207 476298.5957 636446.1273 774794.8243 0.941265224 0.907618945 0.606725984 0.754971881 0.516229287 0.79806916 0.69200181 0.614741582 0.821438279 1 19.56345479 -4.678371983 7.272134962 0.706986874 0.930024761 0.268962989 0.128495048 0.243989299 17.89884934 0.030233877 0.080792164 2.10E-05 4.678371983 0.223037887 S(ph)TELVLSPDMPR ddPTM_HeLa_A485_30min_R1 4 STELVLSPDMPR 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 S(0.991)T(0.009)ELVLSPDMPR;S(0.914)T(0.086)ELVLSPDMPR;S(0.993)T(0.007)ELVLSPDMPR;S(0.962)T(0.038)ELVLSPDMPR ;;; 314.35 1.36E-60 1842440000 533670 603150 578140 616800 808530 650690 811700 859420 575720 830970 TRUE FALSE FALSE 652383.0504 673683.1458 792018.0444 650494.2222 728029.9143 684759.1222 638273.664 648645.8975 691261.7232 623824.4719 1.04577983 1.079924203 1.269616824 1.04275201 1.16704289 1.09767916 1.023162272 1.039789118 1.108102927 1 19.25078062 -6.589878013 5.426753212 1.046756721 1.123585223 0.234881397 0.066554981 0.313648393 17.48551602 0.025605775 0.019749299 2.57E-07 6.589878013 0.076828502 S(ph)TELVLSPDMPR ddPTM_HeLa_A486_30min_R1 5 STELVLSPDMPR 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 S(0.985)T(0.015)ELVLSPDMPR;S(0.992)T(0.008)ELVLSPDMPR;S(0.994)T(0.006)ELVLSPDMPR;S(0.871)T(0.129)ELVLSPDMPR;S(0.99)T(0.01)ELVLSPDMPR ;;;; 335.45 2.69E-73 1952130000 1024880 1016885 688931 394339 1077260 992646 1159347 1045063 877722 1188510 TRUE FALSE FALSE 953041.2045 936303.3292 955703.5334 918041.1208 942140.0057 870183.429 869266.1183 807124.9685 953803.6497 890899.3601 1.069751812 1.050964195 1.072740173 1.030465574 1.057515639 0.97674717 0.975717525 0.905966493 1.070607627 1 19.76490294 -6.261207259 24.96915121 0.979300026 1.055471231 0.443468698 0.03913394 18.01136892 1937597.28 0.012774728 0.012017664 5.48E-07 6.261207259 0.076171205 S(ph)TENVNKLPELSSFGKPSSSVQGTGLIR ddPTM_HeLa_A486_30min_R1 1 STENVNKLPELSSFGKPSSSVQGTGLIR 28 2 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 0 S(0.526)T(0.467)ENVNKLPELS(0.003)S(0.003)FGKPSSSVQGTGLIR 40.407 0.032943 505900000 113370 124870 48535 59218 96510 123920 163100 168350 100120 197780 TRUE FALSE FALSE 105423.3484 114974.8464 67329.05181 137862.4967 84404.81588 108632.0103 122290.6549 130020.3801 108798.4822 148254.6007 0.71109664 0.775522958 0.454144772 0.929903666 0.569323417 0.732739556 0.824869207 0.877007388 0.733862435 1 17.17771735 -8.137374718 0.35323591 1.02489385 0.666909282 0.333054614 0.126074646 2.106008986 0.680477545 0.257397765 0.125833791 7.29E-09 8.137374718 -0.357984569 S(ph)TEPELIQVK ddPTM_HeLa_A485_30min_R1 2 STEPELIQVK 10 0 M0QXM4;Q15758-3;Q15758-2;Q15758 M0QXM4 SLC1A5 Amino acid transporter;Neutral amino acid transporter B(0) 1 0 S(0.99)T(0.01)EPELIQVK;S(0.982)T(0.018)EPELIQVK ; 144.1 5.76E-06 207316000 312530 244745 123961 395030 168160 260776 368280 341680 209569 821620 TRUE FALSE FALSE 382051.2203 273365.7988 169819.3323 416609.4886 151417.4 274429.8281 289593.9694 257882.4443 251627.576 616805.2548 0.619403316 0.443196287 0.275320826 0.67543116 0.24548656 0.444921352 0.469506327 0.418093786 0.407953036 1 19.23445553 -10.32360141 3.514023347 1.002349202 0.440291007 0.641850333 0.124482095 101509581 155240760.6 2498125.799 0.029581279 4.75E-11 10.32360141 -0.562058195 S(ph)TEPELIQVK ddPTM_HeLa_A486_30min_R1 2 STEPELIQVK 10 0 M0QXM4;Q15758-3;Q15758-2;Q15758 M0QXM4 SLC1A5 Amino acid transporter;Neutral amino acid transporter B(0) 1 0 S(0.988)T(0.012)EPELIQVK;S(0.969)T(0.031)EPELIQVK ; 167.84 3.57E-07 287530000 203615 225105 134886 72425 255210 295650 250804 223684 236503 393960 TRUE FALSE FALSE 189342.64 207266.86 187117.4716 168609.0602 223199.1821 259175.7089 188050.1865 172756.0362 257003.2705 295309.8518 0.641166012 0.701862328 0.633630983 0.570956435 0.755813532 0.877639901 0.636789411 0.584999231 0.870283429 1 18.17186996 -14 0.184252218 2.310241693 0.632012244 0.509820759 0.095983866 119.9593507 1.162987972 57.29950828 0.298257762 1.00E-14 14 -1.678229448 S(ph)TEPSVTPDLLNFK ddPTM_HeLa_A485_30min_R1 2 STEPSVTPDLLNFK 14 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.887)T(0.113)EPSVTPDLLNFK;S(0.841)T(0.159)EPSVTPDLLNFK ; 249.3 7.09E-36 60922000 115276 110803 87797 171881 161124 123529 166308 184667 119439 212024 TRUE FALSE FALSE 140918.7485 123760.447 120276.7638 181270.4238 145081.9288 129996.7874 130774.9372 139377.1287 143409.3117 159170.3188 0.885333079 0.777534706 0.755648193 1.138845641 0.911488586 0.816715003 0.82160379 0.875647732 0.900980238 1 17.28021181 -8.192261533 2.630688184 0.999929108 0.872513481 0.125838053 0.100505864 1.961764052 22.24368436 0.102249867 0.027556602 6.42E-09 8.192261533 -0.127415627 S(ph)TEPSVTPDLLNFK ddPTM_HeLa_A486_30min_R1 4 STEPSVTPDLLNFK 14 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.894)T(0.106)EPSVTPDLLNFK;S(0.5)T(0.5)EPSVTPDLLNFK;S(0.855)T(0.142)EPS(0.003)VTPDLLNFK;S(0.833)T(0.167)EPSVTPDLLNFK ;;; 199.31 9.14E-22 89345000 192558 224080 124557 99581 241951 247369 283276 307851 195277 285761 TRUE FALSE FALSE 179060.6786 206323.0847 172788.8062 231829.6005 211603.2495 216851.1278 212397.3486 237760.0476 212203.7676 214204.5856 0.835932985 0.963205732 0.806653161 1.082281221 0.987855834 1.012355208 0.991563033 1.109967123 0.990659313 1 17.70862984 -5.265019442 24.99985978 1.026074434 0.878058136 0.637031366 0.053939347 192.980272 1347599.115 0.014274424 0.022173693 5.43E-06 5.265019442 -0.148016298 S(ph)TEPSVTPDLLNFKK ddPTM_HeLa_A486_30min_R1 1 STEPSVTPDLLNFKK 15 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.989)T(0.011)EPSVTPDLLNFKK 129.62 1.17E-05 96774000 105720 107610 46795 55368 104990 109200 141770 132780 72427 134650 TRUE FALSE FALSE 98309.57394 99082.59169 64915.27721 128899.5021 91821.17521 95728.01426 106297.6465 102548.8926 78705.03068 100932.7636 0.974010524 0.981669264 0.643153669 1.277082858 0.909726158 0.9484335 1.053153037 1.016011936 0.779776832 1 16.62303504 -5.246524339 24.99894863 0.994994921 0.877817024 0.143291049 0.146385007 1824.732675 3058411.724 0.038914192 0.067070727 5.67E-06 5.246524339 -0.117177897 S(ph)TFAGSPERESIHILSVDEK ddPTM_HeLa_A486_30min_R1 1 STFAGSPERESIHILSVDEK 20 1 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 0 S(0.308)T(0.308)FAGS(0.308)PERES(0.075)IHILSVDEK 122.88 5.07E-07 242690000 521440 486440 468060 62238 875680 526320 783810 846100 471940 361430 TRUE FALSE FALSE 484889.7487 447892.7228 649305.3671 144893.2093 765844.049 461387.9896 587692.4477 653461.5002 512848.1392 270925.5755 1.789752584 1.65319469 2.396618946 0.534808163 2.826769114 1.703006402 2.169202544 2.411959443 1.892948417 1 18.04753707 -5.808330493 24.99999981 2.064789426 1.655183818 0.085451248 0.61881544 295.2120621 157390.6253 0.180861505 0.205078312 1.55E-06 5.808330493 -0.409605608 S(ph)TFSLPEEEEEPEPLVFAEQPSVK ddPTM_HeLa_A485_30min_R1 1 STFSLPEEEEEPEPLVFAEQPSVK 24 0 H3BR17;Q6Q0C0-2;Q6Q0C0 H3BR17 TRAF7 E3 ubiquitin-protein ligase TRAF7 1 0 S(0.333)T(0.333)FS(0.333)LPEEEEEPEPLVFAEQPSVK 59.678 0.017079 11483000 11319 10681 7632.2 11448 14049 11958 15945 16121 11612 18900 TRUE FALSE FALSE 13836.8725 11930.05004 10455.66838 12073.37525 12650.23223 12584.10239 12538.22049 12167.29947 13942.42189 14188.57783 0.97521208 0.840820707 0.736907427 0.850922157 0.891578591 0.886917811 0.88368409 0.857541864 0.98265112 1 13.79244237 -7.789704554 5.32816603 0.996579566 0.861807695 0.448336009 0.055794558 0.173429618 12.65020443 0.053345685 0.014900641 1.62E-08 7.789704554 -0.134771871 S(ph)TFSTNYR ddPTM_HeLa_A486_30min_R1 2 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.986)T(0.014)FSTNYR;S(0.986)T(0.014)FSTNYR ; 140.17 0.00042565 655650000 297080 513190 542500 274140 570520 609780 787020 781640 344820 447210 TRUE FALSE FALSE 276256.2261 472522.9554 752570.5287 638211.7743 498960.0617 534551.5434 590099.2718 603677.6351 374709.2752 335225.7052 0.824090223 1.409566594 2.244966651 1.903827077 1.488430195 1.594601891 1.760304364 1.800809502 1.117782048 1 18.35477325 -7.843645644 5.603683204 1.018180297 1.648741098 0.297127261 0.350157657 0.267399299 13.14106319 0.352274618 0.092296668 1.43E-08 7.843645644 0.630560801 S(ph)TGDIAGTVVPETNKEPR ddPTM_HeLa_A486_30min_R1 1 STGDIAGTVVPETNKEPR 18 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.98)T(0.02)GDIAGTVVPETNKEPR 171.47 7.04E-15 0 151030 150450 78121 42637 158430 143840 194610 160710 130490 183780 TRUE FALSE FALSE 140443.5769 138527.7941 108371.5434 99261.09075 138558.2321 126094.4833 145916.5196 124119.8413 141800.9783 137760.2918 1.019477929 1.005571288 0.786667493 0.720534847 1.005792237 0.915318062 1.059205942 0.900984164 1.029331286 1 17.07180058 S(ph)TGGAPTFNVTVTK ddPTM_HeLa_A485_30min_R1 1 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 1 0 S(0.782)T(0.218)GGAPTFNVTVTK 101.15 0.00061674 110390000 206590 226260 188810 306450 295830 238670 327640 345620 200810 402030 TRUE FALSE FALSE 252545.2328 252719.1388 258658.676 323190.5875 266376.1265 251166.3921 257637.0374 260856.1531 241110.7251 301811.3198 0.836765277 0.837341485 0.857021122 1.070836534 0.88259157 0.832196726 0.853636098 0.864302085 0.798878999 1 18.20328739 -6.001476076 24.99999693 0.859987114 0.903355225 0.024389976 0.079471972 189.2927676 3206121.55 0.025497123 0.028538951 9.97E-07 6.001476076 0.043368111 S(ph)TGGAPTFNVTVTK ddPTM_HeLa_A486_30min_R1 1 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 1 0 S(0.5)T(0.5)GGAPTFNVTVTK 64.675 0.018495 128580000 375950 301930 210590 146460 331520 344310 325260 353830 316340 390530 TRUE FALSE FALSE 349597.8464 278003.9672 292136.0878 340966.2817 289937.6703 301832.5329 243876.5078 273270.6331 343760.6059 292738.7461 1.19423155 0.949665772 0.99794131 1.164745994 0.990431483 1.031064514 0.833085852 0.93349663 1.174291448 1 18.15925418 -5.958851257 24.98965497 0.983549463 1.063908727 0.123317648 0.104216474 336.7902077 204531.4919 0.032814423 0.037208011 1.10E-06 5.958851257 0.080359264 S(ph)TGPTQETQAPFIAK ddPTM_HeLa_A485_30min_R1 1 STGPTQETQAPFIAK 15 0 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5 O15231-4 ZNF185 Zinc finger protein 185 1 0 S(0.25)T(0.25)GPT(0.25)QET(0.25)QAPFIAK 59.248 0.030821 116580000 253620 254180 212900 132130 487570 134380 399010 261600 200950 697180 TRUE FALSE FALSE 310036.894 283904.1399 291660.5695 139347.9273 439025.8188 141415.929 313758.2539 197442.1898 241278.8218 523385.8566 0.592367734 0.542437546 0.557257262 0.266243204 0.838818652 0.270194403 0.599477899 0.377240209 0.460996068 1 18.99751541 -10.45766837 3.11021356 1.010294239 0.499022591 0.461084094 0.161977663 88657817.79 109209837 7947923.309 0.037199386 3.49E-11 10.45766837 -0.511271648 S(ph)TGSMSVVSAALVAEPVQNGSR ddPTM_HeLa_A485_30min_R1 1 STGSMSVVSAALVAEPVQNGSR 22 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.25)T(0.25)GS(0.25)MS(0.25)VVS(0.001)AALVAEPVQNGSR 53.037 0.033485 67106000 17088 36389 37561 19437 38115 30087 32338 33536 22338 30085 TRUE FALSE FALSE 20889.16665 40644.37701 51456.37694 20498.79409 34320.13677 31662.3088 25428.72212 25311.24342 26821.0317 22585.36317 0.924898417 1.79958926 2.278306377 0.907614101 1.519574271 1.401895048 1.125893878 1.120692336 1.187540422 1 14.46310049 -6.388984141 0.831254349 1.079816712 1.585953828 0.182807836 0.374688268 1.051075429 1.543711828 0.265798122 0.220798982 4.08E-07 6.388984141 0.506137116 S(ph)TLMNFSK ddPTM_HeLa_A485_30min_R1 2 STLMNFSK 8 0 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 S(0.978)T(0.022)LMNFSK;S(0.986)T(0.014)LMNFSK ; 149.94 0.00024101 568770000 1045350 826680 611070 1240920 1014380 842590 1181360 1120380 813320 1447700 TRUE FALSE FALSE 1277884.501 923353.0348 837130.2217 1308708.317 913384.7655 886706.7095 928952.7852 845605.0483 976545.8638 1086815.033 1.175806795 0.849595384 0.770260069 1.204168398 0.840423382 0.815876375 0.854747825 0.778057924 0.898539157 1 20.051675 S(ph)TLMNFSK ddPTM_HeLa_A486_30min_R1 2 STLMNFSK 8 0 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 S(0.968)T(0.032)LMNFSK;S(0.993)T(0.007)LMNFSK ; 112.13 0.0011314 910640000 1637650 2075380 1210540 872680 1683560 2003830 2250540 2021980 1570740 2000190 TRUE FALSE FALSE 1522859.192 1910919.33 1679293.507 2031643.143 1472392.206 1756617.828 1687431.088 1561619.294 1706893.008 1499329.405 1.015693541 1.27451601 1.120029729 1.355034548 0.982033836 1.171602333 1.12545721 1.041545166 1.138437626 1 20.51588595 -5.783204502 24.99982768 1.085791709 1.19216925 0.234712106 0.100720432 365.3448537 419639.7957 0.029508656 0.033487556 1.65E-06 5.783204502 0.106377541 S(ph)TMVGTPYWMAPEVVTR ddPTM_HeLa_A485_30min_R1 1 STMVGTPYWMAPEVVTR 17 0 Q13177;H7C1X3;H0YCG5;A0A087X294;O75914-2;O75914;O75914-4;O75914-3;E9PM17;B3KNX7;Q13153;Q13153-2 Q13177;E9PM17 PAK2;PAK1;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 1 0 S(0.5)T(0.5)MVGTPYWMAPEVVTR 84.508 0.0017156 36131000 25050 30756 24464 32020 44307 27001 42235 44657 24913 36321 TRUE FALSE FALSE 30622.28608 34352.64666 33514.25163 33769.17152 39895.63951 28414.73061 33211.14722 33704.80073 29912.81058 27266.84314 1.123059458 1.259868863 1.229121078 1.238470158 1.463155794 1.04209829 1.218004851 1.236109386 1.097039743 1 14.73486006 -7.94250804 2.860110132 1.000648743 1.229964534 0.348110372 0.101288461 0.261148231 4.634184726 0.096072389 0.025938342 1.14E-08 7.94250804 0.229315791 S(ph)TMVGTPYWMAPEVVTR ddPTM_HeLa_A486_30min_R1 1 STMVGTPYWMAPEVVTR 17 0 Q13177;H7C1X3;H0YCG5;A0A087X294;O75914-2;O75914;O75914-4;O75914-3;E9PM17;B3KNX7;Q13153;Q13153-2 Q13177;E9PM17 PAK2;PAK1;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1 1 0 S(0.5)T(0.5)MVGTPYWMAPEVVTR 106.6 0.0002 39485000 18988 21494 23268 12049 32911 26911 32961 33353 17736 23637 TRUE FALSE FALSE 17657.03925 19790.73716 32277.99274 28050.68092 28782.9955 23590.99443 24713.80917 25759.24999 19273.37076 17718.14135 0.996551439 1.116975916 1.821748235 1.583161595 1.624492938 1.331459884 1.394830794 1.453834772 1.087776104 1 14.11293965 -7.830091551 4.31540556 1.008176002 1.428707025 0.301565345 0.226585219 0.273491552 9.22343904 0.230644687 0.061824638 1.48E-08 7.830091551 0.420531023 S(ph)TNTAVSR ddPTM_HeLa_A485_30min_R1 7 STNTAVSR 8 0 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 S(0.983)T(0.016)NTAVSR;S(0.981)T(0.019)NTAVSR;S(0.98)T(0.02)NTAVSR;S(0.983)T(0.017)NTAVSR;S(0.973)T(0.027)NTAVSR;S(0.984)T(0.016)NTAVSR;S(0.956)T(0.043)NT(0.001)AVSR ;;;;;; 160.81 4.16E-05 14948700000 6988233 8025580 4880850 7357582 4289950 6592060 6681741 7252240 6027730 8385447 TRUE FALSE FALSE 8542741.322 8964101.768 6686479.524 7759508.074 3862827.515 6937210.068 5254132.451 5473616.769 7237440.121 6295109.386 1.357044143 1.423978714 1.062170506 1.23262482 0.613623573 1.101999925 0.834637197 0.869503043 1.149692512 1 22.58580002 -5.036613593 1.454665656 0.936139109 1.408759023 0.491923804 0.167173203 0.355573868 1.399252453 0.050519265 0.160015891 9.19E-06 5.036613593 0.472619915 S(ph)TNTAVSR ddPTM_HeLa_A486_30min_R1 4 STNTAVSR 8 0 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 S(0.985)T(0.015)NTAVSR;S(0.983)T(0.017)NTAVSR;S(0.979)T(0.021)NTAVSR;S(0.985)T(0.015)NTAVSR ;;; 146.17 9.30E-05 9925190000 7758130 4381420 3787490 1415286 3055240 7469310 4225500 3353510 6766820 8028760 TRUE FALSE FALSE 7214325.15 4034220.322 5254107.561 3294857.333 2672023.31 6547822.475 3168235.207 2589988.98 7353373.406 6018306.238 1.198730152 0.670324866 0.873020972 0.547472528 0.44398261 1.087984263 0.526433033 0.43035181 1.221834369 1 22.52092609 -7.777974133 24.99905872 1.110917388 0.716137271 0.273017192 0.253507379 361.085938 545913.8559 0.23804012 0.062169164 1.67E-08 7.777974133 -0.394780117 S(ph)TNTAVSRR ddPTM_HeLa_A485_30min_R1 2 STNTAVSRR 9 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 S(0.941)T(0.057)NT(0.002)AVSRR;S(0.982)T(0.018)NTAVSRR ; 101.56 0.00098395 231560000 22349.9 85736 34693 12723.9 39451 64423 64777 163760 31774 20247.9 TRUE FALSE FALSE 27321.55815 95762.0794 47527.3844 13418.97444 35523.11992 67796.08866 50936.86477 123597.6032 38150.75035 15200.47116 1.797415215 6.299941519 3.126704684 0.882799901 2.336974922 4.460130737 3.351005651 8.131169218 2.509839987 1 13.89182842 -6.275692149 23.45032197 4.302413387 2.980053056 0.033305434 2.167083204 1007.487301 1657628.366 0.761852177 0.675659838 5.30E-07 6.275692149 -1.322360331 S(ph)TPEHTWSSR ddPTM_HeLa_A485_30min_R1 2 STPEHTWSSR 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.5)T(0.5)PEHTWSSR;S(0.5)T(0.5)PEHTWSSR ; 125.54 8.22E-05 1090820000 547290 643770 691750 608980 902800 479770 648150 543780 625980 771880 TRUE FALSE FALSE 669032.7724 719053.3014 947657.1111 642247.0354 812914.0621 504890.0153 509667.4576 410417.1024 751608.4442 579464.5214 1.154570725 1.240892712 1.635401437 1.108345743 1.402871154 0.871304449 0.87954903 0.708269596 1.297074137 1 19.14436081 -6.264525185 24.99231304 0.928525629 1.31171585 0.454735818 0.194749549 237.7555636 1925602.093 0.065728627 0.060390857 5.44E-07 6.264525185 0.383190221 S(ph)TPEHTWSSR ddPTM_HeLa_A486_30min_R1 2 STPEHTWSSR 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.987)T(0.013)PEHTWSSR;S(0.5)T(0.5)PEHTWSSR ; 190.46 4.58E-10 946410000 766140 844010 643030 99319 814270 707130 805390 736670 714050 616710 TRUE FALSE FALSE 712437.5424 777127.5738 892028.4369 231219.6513 712136.6638 619891.4902 603872.9035 568946.3224 775944.4289 462281.8019 1.541132572 1.681068929 1.92962049 0.500170351 1.540481717 1.340938552 1.306287422 1.230734846 1.678509571 1 18.81841305 S(ph)TPENHPETPK ddPTM_HeLa_A485_30min_R1 1 STPENHPETPK 11 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 S(0.5)T(0.5)PENHPETPK 49.988 0.036407 233620000 603430 522070 509490 913890 644220 551940 797550 714290 559070 1100600 TRUE FALSE FALSE 737660.9217 583121.5451 697971.5526 963813.4966 580079.1948 580838.7249 627146.9271 539109.2575 671270.2209 826240.675 0.892791827 0.705752649 0.84475574 1.166504538 0.702070489 0.702989749 0.759036617 0.652484529 0.812439088 1 19.65620256 S(ph)TPENHPETPK ddPTM_HeLa_A486_30min_R1 1 STPENHPETPK 11 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 S(0.5)T(0.5)PENHPETPK 107.35 0.00048528 222320000 617820 602820 268750 223070 448430 613400 728250 669990 478940 810770 TRUE FALSE FALSE 574514.0084 555050.3478 372817.1974 519318.2333 392183.728 537724.9446 546034.1474 517447.9028 520454.9048 607747.9148 0.945316297 0.913290419 0.613440521 0.854496117 0.645306579 0.884782871 0.898454991 0.85141864 0.856366418 1 19.21311351 -6.471113685 24.99796402 0.889527336 0.791343291 0.193921345 0.105061419 637.9334016 308065.6048 0.037441728 0.033020177 3.38E-07 6.471113685 -0.098184045 S(ph)TPKEDDSSASTSQSTR ddPTM_HeLa_A486_30min_R1 1 STPKEDDSSASTSQSTR 17 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.5)T(0.5)PKEDDSSASTSQSTR 71.535 0.00090127 0 130770 107910 54156 102540 118680 143390 205660 183540 90245 223940 TRUE FALSE FALSE 121603.6983 99358.8186 75126.65355 238718.3021 103794.0478 125699.9997 154201.6928 141751.9487 98067.50926 167863.9664 0.724418116 0.591900815 0.447544849 1.422093778 0.618322383 0.748820622 0.91861104 0.844445367 0.584208222 1 17.35693305 S(ph)TPLEENVVDREQIDFLAAR ddPTM_HeLa_A486_30min_R1 1 STPLEENVVDREQIDFLAAR 20 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 S(0.5)T(0.5)PLEENVVDREQIDFLAAR 111.97 1.16E-05 31611000 7277.8 9545.3 6973.1 5587.9 11689 9742.8 10621 12493 6991.2 7897.7 TRUE FALSE FALSE 6767.663803 8788.895665 9673.271066 13008.9136 10222.85662 8540.832394 7963.513463 9648.61662 7597.202845 5920.064515 1.143173995 1.484594575 1.633980684 2.197427674 1.726815071 1.442692453 1.345173426 1.629816127 1.283297306 1 12.53139718 -6.404835739 4.515665407 1.370230495 1.658358831 0.213379846 0.283695823 0.4379697 14.24758555 0.110376724 0.095916662 3.94E-07 6.404835739 0.288128336 S(ph)TPLKER ddPTM_HeLa_A485_30min_R1 1 STPLKER 7 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 S(0.5)T(0.5)PLKER 83.783 0.0046278 2804500000 677300 695930 502830 873710 763550 726200 1132200 1213100 641840 1164600 TRUE FALSE FALSE 827963.0483 777312.9597 688847.7415 921438.5649 687528.281 764222.7091 890296.2208 915585.3229 770651.4007 874286.6529 0.947015542 0.889082496 0.787896898 1.053931868 0.786387712 0.874110003 1.018311578 1.04723699 0.881463074 1 19.73774685 -6.75671848 24.99816523 0.990689332 0.887844196 0.249941269 0.082180961 161.2091466 853642.268 0.031343581 0.023469653 1.75E-07 6.75671848 -0.102845136 S(ph)TPLSQPSANGVQTEGLDYDR ddPTM_HeLa_A485_30min_R1 3 STPLSQPSANGVQTEGLDYDR 21 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(0.498)T(0.498)PLS(0.004)QPSANGVQTEGLDYDR;S(0.5)T(0.5)PLS(0.001)QPSANGVQTEGLDYDR;S(0.499)T(0.499)PLS(0.001)QPSANGVQTEGLDYDR ;; 220.17 1.58E-35 661250000 187342 184935 200177 216521 254089 176931 278878 268935 217242 308438 TRUE FALSE FALSE 229015.5816 206561.5395 274230.8024 228348.994 228791.007 186194.8336 219293.4371 202978.2696 260840.4767 231550.083 0.989054198 0.892081475 1.184326081 0.986175393 0.988084323 0.804123372 0.947066977 0.876606335 1.126497013 1 17.82096475 -6.012925511 23.85510503 0.937709013 1.012848709 0.068067647 0.103176628 818.4184903 1510462.219 0.033168299 0.034773603 9.71E-07 6.012925511 0.075139695 S(ph)TPLSQPSANGVQTEGLDYDR ddPTM_HeLa_A486_30min_R1 2 STPLSQPSANGVQTEGLDYDR 21 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(0.441)T(0.441)PLS(0.117)QPSANGVQTEGLDYDR;S(0.333)T(0.333)PLS(0.333)QPSANGVQTEGLDYDR ; 283.19 6.30E-73 435490000 147889 144912 124331 52011 155166 142085 189077 168606 123741 157564 TRUE FALSE FALSE 137522.7448 133428.6454 172475.2929 121084.2365 135703.6334 124555.9973 141767.9347 130218.0944 134466.9695 118108.9488 1.164371931 1.129708178 1.46030673 1.025191043 1.148969953 1.054585605 1.200314931 1.102525217 1.138499418 1 16.84975875 -13.99999673 0.057394501 0.370298637 1.434188202 0.203067731 0.108763556 709.8410408 2.979769732 63.46001785 11.39446226 1.00E-14 13.99999673 1.063889565 S(ph)TPMGR ddPTM_HeLa_A485_30min_R1 1 STPMGR 6 0 Q66K80 Q66K80 RUSC1-AS1 Putative uncharacterized protein RUSC1-AS1 1 0 S(0.997)T(0.003)PMGR 71.348 0.027655 321150000 83654 96218 53535 80589 62920 85778 68840 65088 65194 101440 TRUE FALSE FALSE 102262.5437 107469.8581 73339.82428 84991.37301 56655.46387 90269.20344 54131.77163 49125.06595 78277.83781 76152.87486 1.34285861 1.411238358 0.963060481 1.116062567 0.743970126 1.185368295 0.71083031 0.645084851 1.02790391 1 16.21661088 -4.837835226 0.982581475 0.869546418 1.483786143 0.501799105 0.174276078 0.717567973 0.996437076 0.061937381 0.387490143 1.45E-05 4.837835226 0.614239724 S(ph)TPMGR ddPTM_HeLa_A486_30min_R1 1 STPMGR 6 0 Q66K80 Q66K80 RUSC1-AS1 Putative uncharacterized protein RUSC1-AS1 1 0 S(0.993)T(0.007)PMGR 63.443 0.036847 122710000 79430 69101 45309 17214 35772 72900 44556 40110 65912 75246 TRUE FALSE FALSE 73862.36718 63625.1851 62853.85822 40075.06195 31285.1422 63906.33919 33407.61753 30977.8286 71625.30523 56403.91183 1.309525612 1.12802788 1.11435282 0.710501464 0.554662632 1.133012536 0.592292564 0.549214187 1.269864144 1 15.7835076 -5.12644809 4.10394659 0.803197661 1.200129937 0.318291922 0.237379612 0.260483246 7.371373522 0.064429329 0.118399452 7.47E-06 5.12644809 0.396932276 S(ph)TPPLYR ddPTM_HeLa_A485_30min_R1 2 STPPLYR 7 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 S(0.537)T(0.463)PPLYR;S(0.659)T(0.341)PPLYR ; 82.529 0.0089623 0 1112590 1211360 1032100 1399290 1585800 1157740 1488230 1470850 1022500 1802030 TRUE FALSE FALSE 1360081.807 1353018.015 1413916.739 1475729.67 1427912.184 1218357.476 1170257.503 1110121.731 1227706.371 1352817.085 1.00537007 1.000148527 1.045164757 1.090856765 1.055510165 0.900607695 0.865052279 0.820600023 0.907518381 1 20.36753535 -6.298827769 5.734502445 0.884267595 1.040532796 0.667330929 0.049169249 0.112356273 10.48364595 0.017558564 0.01572137 5.03E-07 6.298827769 0.156265201 S(ph)TPPLYR ddPTM_HeLa_A486_30min_R1 2 STPPLYR 7 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 S(0.565)T(0.435)PPLYR;S(0.776)T(0.224)PPLYR ; 92.653 0.004728 0 958520 938080 598110 301240 923820 1003360 1125410 1077200 750160 1085410 TRUE FALSE FALSE 891332.6978 863743.1244 829714.2099 701301.9438 807945.8813 879575.6446 843820.5146 831945.0751 815184.4728 813616.2712 1.095519755 1.061609944 1.019785665 0.861956636 0.993030634 1.081069388 1.037123451 1.022527578 1.001927446 1 19.63398901 S(ph)TPPPNNLVNPVQELETER ddPTM_HeLa_A485_30min_R1 2 STPPPNNLVNPVQELETER 19 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.5)T(0.5)PPPNNLVNPVQELETER;S(0.5)T(0.5)PPPNNLVNPVQELETER ; 82.707 0.00048048 0 13043.4 14294 16006.2 10230.3 16890.5 12539.6 12742.1 14920.2 13882.2 19712.9 TRUE FALSE FALSE 15944.85933 15965.55896 21927.55945 10789.15538 15208.82251 13196.15407 10019.64624 11260.99756 16668.2302 14798.83682 1.07744004 1.078838773 1.481708307 0.729054284 1.027703913 0.891702113 0.677056337 0.760938018 1.126320292 1 13.85319616 -5.277080583 24.94182573 0.874821886 1.199280044 0.435969672 0.168826748 710.260474 1132596.331 0.047673315 0.07098121 5.28E-06 5.277080583 0.324458158 S(ph)TPPPNNLVNPVQELETER ddPTM_HeLa_A486_30min_R1 2 STPPPNNLVNPVQELETER 19 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.5)T(0.5)PPPNNLVNPVQELETER;S(0.5)T(0.5)PPPNNLVNPVQELETER ; 103.66 0.00010648 42789000 21050 24454.4 22244.7 10265.1 27389 18437.6 30690 26411 18365.8 20797 TRUE FALSE FALSE 19574.5037 22516.54428 30858.44357 23897.67157 23953.61623 16162.95637 23011.03739 20397.79185 19957.76233 15589.29583 1.255637452 1.444359291 1.979463595 1.532953882 1.536542541 1.036798361 1.476079333 1.30844857 1.280222182 1 13.92826814 -6.12275862 7.549798326 1.256079308 1.570671839 0.370004233 0.211955769 0.32912127 18.90943523 0.071775287 0.071878192 7.54E-07 6.12275862 0.314592531 S(ph)TPPPNNLVNPVQELETERR ddPTM_HeLa_A485_30min_R1 1 STPPPNNLVNPVQELETERR 20 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.5)T(0.5)PPPNNLVNPVQELETERR 75.112 0.0021259 181320000 24848 26609 14777 21946 30562 17539 26033 22557 11992 22068 TRUE FALSE FALSE 30375.35188 29720.69108 20243.62722 23144.85441 27519.13997 18457.31492 20470.83688 17024.86038 14398.6844 16566.85373 1.833501543 1.793985241 1.221935532 1.397057932 1.661096332 1.114111057 1.235650245 1.027645965 0.869126066 1 14.01601202 -3.747609708 0.247121784 0.87252855 2.904757377 0.718448864 0.172812398 7.441933862 0.31685763 0.263161964 4.813213187 0.000178809 3.747609708 2.032228827 S(ph)TPYKPIDDR ddPTM_HeLa_A485_30min_R1 1 STPYKPIDDR 10 1 Q8NB90-3;Q8NB90-2;Q8NB90 Q8NB90-3 SPATA5 Spermatogenesis-associated protein 5 1 0 S(0.5)T(0.5)PYKPIDDR 84.718 0.0010277 0 231220 202680 153080 225570 313300 243480 323750 363910 197870 340990 TRUE FALSE FALSE 282654.0913 226381.6629 209710.6622 237892.3179 282106.7519 256228.2363 254578.1677 274660.5019 237580.694 255987.4685 1.104171595 0.884346661 0.819222376 0.929312358 1.102033446 1.000940545 0.994494649 1.072945108 0.928095018 1 17.96571366 -5.614664327 11.52324682 1.018143331 0.921363899 0.194396153 0.080346933 0.658733114 78.22064387 0.023765235 0.030680997 2.43E-06 5.614664327 -0.096779432 S(ph)TS(ph)PAGQHHS(ph)PISSR ddPTM_HeLa_A485_30min_R1 1 STSPAGQHHSPISSR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(0.969)T(0.189)S(0.843)PAGQHHS(0.968)PIS(0.03)S(0.002)R 126.51 1.98E-05 1395000000 308380 425930 388690 338440 538620 378630 441980 465220 386570 451550 TRUE FALSE FALSE 376978.0671 475738.8084 532482.6057 356928.1202 484993.1016 398454.4813 347547.3624 351124.0656 464151.0532 338986.8952 1.112072686 1.403413569 1.570805873 1.052926014 1.430713424 1.17542739 1.025253092 1.035804247 1.369230079 1 18.37086998 -6.472800603 6.89706533 1.108924052 1.317923671 0.25066002 0.169877899 0.341338168 39.05977961 0.059949221 0.052112029 3.37E-07 6.472800603 0.20899962 S(ph)TS(ph)PAGQHHS(ph)PISSR ddPTM_HeLa_A486_30min_R1 2 STSPAGQHHSPISSR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(0.935)T(0.142)S(0.923)PAGQHHS(0.843)PIS(0.127)S(0.03)R;S(0.944)T(0.062)S(0.993)PAGQHHS(0.496)PIS(0.384)S(0.12)R ; 142.79 7.50E-08 3542700000 760590 869850 660450 188727 877180 757010 857320 834220 645860 676830 TRUE FALSE FALSE 707276.5687 800919.9181 916193.9275 439365.9937 767155.905 663617.8029 642809.4682 644286.3169 701843.6648 507347.3626 1.394067696 1.578642124 1.805851365 0.866006263 1.512092033 1.308014689 1.267000709 1.269911631 1.383359246 1 18.95261432 -1.000001346 0.036938566 1.88E-06 3.473328186 0.252250737 0.222134749 1275.014093 3.60270545 97.27253991 288.6832805 0.09999969 1.000001346 3.473326308 S(ph)TSATDTHHVEMAR ddPTM_HeLa_A485_30min_R1 6 STSATDTHHVEMAR 14 0 H3BQP2;H3BNP3;H3BTL2;H3BS02;O14874-2;O14874-3;O14874 H3BQP2 BCKDK "[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial" 1 0 S(0.805)T(0.15)S(0.045)ATDTHHVEMAR;S(0.873)T(0.127)SATDTHHVEMAR;S(0.764)T(0.189)S(0.047)ATDTHHVEMAR;S(0.983)T(0.016)S(0.001)AT(0.001)DTHHVEMAR;S(0.921)T(0.033)S(0.044)AT(0.002)DTHHVEMAR;S(0.735)T(0.185)S(0.08)ATDTHHVEMAR ;;;;; 218.28 8.34E-28 4195360000 482788.9 664975 714905 364880.6 792924 623552 675678 744861 629721 636564 TRUE FALSE FALSE 590183.6252 742738.0417 979378.1092 384813.1033 713977.7024 656200.2185 531313.8755 562182.6719 756100.2286 477880.3099 1.235003019 1.554234452 2.049421349 0.805249966 1.494051309 1.373147637 1.1118137 1.176408946 1.58219582 1 18.8662898 -5.2620706 24.99999959 1.241001002 1.607021063 0.285049703 0.283484583 78.14000338 3094841.586 0.077563125 0.123242701 5.47E-06 5.2620706 0.366020061 S(ph)TSATDTHHVEMAR ddPTM_HeLa_A486_30min_R1 3 STSATDTHHVEMAR 14 0 H3BQP2;H3BNP3;H3BTL2;H3BS02;O14874-2;O14874-3;O14874 H3BQP2 BCKDK "[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial" 1 0 S(0.956)T(0.036)S(0.009)ATDTHHVEMAR;S(0.942)T(0.041)S(0.007)AT(0.01)DTHHVEMAR;S(0.99)T(0.01)SATDTHHVEMAR ;; 187.78 9.71E-18 2922380000 481910 588022 564713 111244.6 725827 486475 502094 630779 560907 453946 TRUE FALSE FALSE 448130.5976 541424.9952 783384.9971 258983.0508 634787.0096 426458.6606 376464.7706 487164.3915 609526.8704 340274.9669 1.316966104 1.59113966 2.302211662 0.761099334 1.865511928 1.253276621 1.106354587 1.43167861 1.791277436 1 18.37634149 -5.261063178 24.9999993 1.345184072 1.722209146 0.193869712 0.389976859 62.21311681 4134178.422 0.105728796 0.169528735 5.48E-06 5.261063178 0.377025074 S(ph)TSEGAWPQLPSGLSMMR ddPTM_HeLa_A485_30min_R1 1 STSEGAWPQLPSGLSMMR 18 0 G3V1A6;P57764 G3V1A6 GSDMD Gasdermin-D 1 0 S(0.333)T(0.333)S(0.333)EGAWPQLPSGLSMMR 101.42 0.0002793 54125000 39707 56894 58515 49186 68941 53802 69228 78828 56362 72088 TRUE FALSE FALSE 48539.68516 63547.25839 80162.13351 51872.90663 62076.99197 56618.98953 54436.87226 59495.3094 67673.33642 54117.78828 0.896926624 1.174239754 1.48125295 0.9585186 1.147071858 1.046217728 1.005896102 1.099366979 1.250482301 1 15.72381526 S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_HeLa_A485_30min_R1 2 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.333)T(0.333)S(0.333)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.322)T(0.322)S(0.322)FRGGMGS(0.033)GGLAT(0.002)GIAGGLAGMGGIQNEK ; 215.43 1.54E-32 714980000 235827 277571 250272 272070 401150 333010 418020 456190 308459 411680 TRUE FALSE FALSE 288285.9026 310030.5139 342858.0275 286932.4952 361210.0975 350445.8887 328706.6121 344308.6872 370363.8919 309055.7524 0.932795783 1.003153999 1.109372742 0.928416614 1.16875384 1.133924497 1.063583543 1.114066587 1.198372427 1 18.23750759 -3.4661249 0.523040942 1.112407771 0.60781168 0.329223998 0.074103103 10.26650672 1.15531304 0.040348632 3.786392041 0.000341881 3.4661249 -0.504596091 S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_HeLa_A486_30min_R1 4 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.333)T(0.333)S(0.333)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.306)T(0.306)S(0.306)FRGGMGS(0.055)GGLAT(0.027)GIAGGLAGMGGIQNEK;S(0.324)T(0.324)S(0.324)FRGGMGS(0.023)GGLAT(0.004)GIAGGLAGMGGIQNEK;S(0.326)T(0.326)S(0.326)FRGGMGS(0.021)GGLAT(0.001)GIAGGLAGMGGIQNEK ;;; 195.29 1.16E-21 2406470000 965608 925629 593902 456895 1001615 1046133 1239440 1381363 869266 1340016 TRUE FALSE FALSE 897923.8656 852278.787 823876.7596 1063674.65 875983.107 917071.7468 929319.0025 1066856.8 944614.6768 1004467.272 0.893930436 0.848488359 0.820212647 1.05894406 0.872087256 0.912993158 0.925185946 1.062112057 0.940413594 1 19.93799913 -5.706470226 0.35961201 1.007634803 0.826564517 0.295978038 0.066405245 3.016181973 0.645914435 0.072794283 0.217321524 1.97E-06 5.706470226 -0.181070286 S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_HeLa_A485_30min_R1 1 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.329)T(0.329)S(0.329)FRGGMGS(0.013)GGLATGIAGGLAGMGGIQNEKETMQSLNDR 72.623 0.0014602 152710000 12064 14934 19411 10086 41195 30301 30952 57555 21718 20594 TRUE FALSE FALSE 14747.59518 16680.40139 26591.93666 10636.97264 37093.48116 31887.51351 24338.85235 43439.54601 26076.60339 15460.2948 0.953901291 1.078918714 1.720014851 0.688018746 2.399273858 2.062542397 1.574281257 2.80974888 1.686682157 1 13.91628021 -5.764158895 24.9999994 2.00220791 1.151535311 0.364167273 0.517964575 72.06766452 662505.7937 0.150360079 0.17824517 1.72E-06 5.764158895 -0.850672598 S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_HeLa_A486_30min_R1 1 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.349)T(0.349)S(0.288)FRGGMGS(0.014)GGLAT(0.001)GIAGGLAGMGGIQNEKETMQSLNDR 122.57 9.22E-07 254660000 25248 23726 24926 21886 63242 27781 35244 58505 21553 35631 TRUE FALSE FALSE 23478.24558 21845.86535 34578.01474 50951.71406 55309.59865 24353.66268 26425.57843 45184.68866 23421.23139 26708.76568 0.879046447 0.817928676 1.294631701 1.907677602 2.070840686 0.911822844 0.989397217 1.691755029 0.876911785 1 14.70502568 -7.79965297 24.98222054 0.93845464 1.322720317 0.116016225 0.421664877 460.6381699 301132.1531 0.444210588 0.114703987 1.59E-08 7.79965297 0.384265676 S(ph)TSGSPRPAGAKPK ddPTM_HeLa_A485_30min_R1 2 STSGSPRPAGAKPK 14 2 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 S(0.275)T(0.275)S(0.24)GS(0.21)PRPAGAKPK;S(0.313)T(0.258)S(0.234)GS(0.195)PRPAGAKPK ; 52.453 0.021388 2727100000 3758000 3655000 2281590 4724300 4767900 4611900 6644700 6991300 3485300 7011200 TRUE FALSE FALSE 4593954.135 4082420.456 3125645.086 4982376.546 4293191.135 4853371.953 5225005.563 5276672.713 4184767.741 5263436.872 0.872805022 0.775618774 0.593841089 0.946601369 0.815663081 0.922091795 0.992698438 1.002514677 0.795063728 1 22.32757371 -5.776527382 1.458476554 0.94291829 0.76139941 0.35259656 0.099139133 0.439368455 1.948152441 0.037684808 0.051321907 1.67E-06 5.776527382 -0.18151888 S(ph)TSLNERPKR ddPTM_HeLa_A485_30min_R1 1 STSLNERPKR 10 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1 P49815-5 TSC2 Tuberin 1 0 S(0.333)T(0.333)S(0.333)LNERPKR 66.538 0.0077398 196250000 57168 67160 53079 57825 89064 85836 119700 147300 64440 94801 TRUE FALSE FALSE 69884.82437 75013.77779 72715.1309 60983.83333 80196.47544 90330.24023 94125.11714 111174.444 77372.51692 71168.85538 0.981957965 1.054025351 1.021726857 0.856889337 1.126847903 1.269238345 1.322560503 1.562122131 1.087168207 1 16.11895841 -6.082539857 3.315972403 1.287802947 0.986696435 0.402469836 0.149872766 0.224175543 4.736145114 0.050227068 0.051727759 8.27E-07 6.082539857 -0.301106512 S(ph)TSPFGIPEEASEMLEAKPK ddPTM_HeLa_A486_30min_R1 1 STSPFGIPEEASEMLEAKPK 20 1 Q96D09 Q96D09 GPRASP2 G-protein coupled receptor-associated sorting protein 2 1 0 S(0.348)T(0.348)S(0.305)PFGIPEEASEMLEAKPK 73.783 0.0019275 235930000 145200 135870 60057 78388 141160 159430 194210 205430 126190 220190 TRUE FALSE FALSE 135022.2298 125103.1664 83312.67878 182491.2255 123454.3965 139761.1476 145616.6039 158658.0735 137128.2508 165052.9908 0.818053821 0.757957585 0.504763218 1.10565234 0.747968249 0.846765314 0.882241534 0.961255369 0.830813487 1 17.33256976 -5.924945808 0.274414981 0.992580991 0.659146247 0.205527344 0.138241814 5.634129064 0.763656431 0.211359843 0.62630397 1.19E-06 5.924945808 -0.333434744 S(ph)TSPRDDEDIISEKEENILSLSLK ddPTM_HeLa_A485_30min_R1 1 STSPRDDEDIISEKEENILSLSLK 24 2 H0YA93;Q86UW6-2;Q86UW6 H0YA93 N4BP2 NEDD4-binding protein 2 1 0 S(0.333)T(0.333)S(0.333)PRDDEDIIS(0.002)EKEENILSLSLK 49.445 0.018241 35655000 8794.1 6972.1 7017.7 15015 15260 14880 20649 20002 8650.9 25383 TRUE FALSE FALSE 10750.31721 7787.426446 9613.839261 15835.23143 13740.66082 15659.09379 16237.17246 15096.47814 10387.05628 19055.48524 0.56415867 0.408671117 0.504518208 0.831006465 0.721086902 0.821763056 0.852099658 0.792237928 0.545095344 1 14.21791873 -5.239294464 8.913261229 0.786561459 0.48353651 0.598589982 0.113237912 0.212337938 79.40089354 0.029832721 0.050607644 5.76E-06 5.239294464 -0.303024949 S(ph)TSPRDDEDIISEKEENILSLSLK ddPTM_HeLa_A486_30min_R1 1 STSPRDDEDIISEKEENILSLSLK 24 2 H0YA93;Q86UW6-2;Q86UW6 H0YA93 N4BP2 NEDD4-binding protein 2 1 0 S(0.333)T(0.333)S(0.333)PRDDEDIISEKEENILSLSLK 154.88 5.28E-10 164600000 44512 40841 27289 34534 55886 69092 83476 75592 42683 72646 TRUE FALSE FALSE 41391.93866 37604.61042 37856.03162 80396.89725 48876.25676 60568.13152 62589.42188 58381.35176 46382.79681 54454.96875 0.760113165 0.690563438 0.695180486 1.476392313 0.897553665 1.112260881 1.149379447 1.072103301 0.851764272 1 15.73277607 -5.140686455 22.8584672 1.080094677 0.712773146 0.519843636 0.160584443 6.80550914 1266.297734 0.041763089 0.072335895 7.23E-06 5.140686455 -0.367321531 S(ph)TSPVTDPSIPIR ddPTM_HeLa_A485_30min_R1 1 STSPVTDPSIPIR 13 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.364)T(0.364)S(0.273)PVTDPSIPIR 118.48 0.00013431 790170000 675450 1023400 976240 744500 1188100 898070 1133100 1220800 894550 989440 TRUE FALSE FALSE 825701.5222 1143077.728 1337391.801 785170.1498 1069808.592 945091.5565 891003.9284 921396.8859 1074077.98 742790.8173 1.11162053 1.538895879 1.800495873 1.057054196 1.440255544 1.272352235 1.199535465 1.240452715 1.446003309 1 19.50259645 -5.279796222 24.99643565 1.254981531 1.489193345 0.23025683 0.205069406 1220.713855 1662238.334 0.056933117 0.084613888 5.25E-06 5.279796222 0.234211814 S(ph)TSPVTDPSIPIRK ddPTM_HeLa_A486_30min_R1 2 STSPVTDPSIPIRK 14 1 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.348)T(0.348)S(0.301)PVT(0.003)DPSIPIRK;S(0.353)T(0.353)S(0.294)PVT(0.001)DPSIPIRK ; 58.079 0.020171 502170000 442260 447740 316760 188497 503520 453430 510470 541560 386550 533170 TRUE FALSE FALSE 411259.8578 412259.4518 439417.9551 438830.5421 440363.8265 397490.4167 382745.0068 418258.6102 420056.4652 399660.7616 1.029022354 1.03152346 1.09947735 1.098007571 1.101844036 0.994569532 0.957674717 1.046534087 1.051032539 1 18.60841641 -6.269373963 24.89784264 1.009602588 1.072701817 0.446677913 0.034503936 608.2565333 1908634.476 0.013388044 0.012022531 5.38E-07 6.269373963 0.063099229 S(ph)TSQSIVSLLTGTAGEDEK ddPTM_HeLa_A485_30min_R1 1 STSQSIVSLLTGTAGEDEK 19 0 V9GZ20;V9GXZ5;Q70EL4-2;Q70EL4-3;Q70EL4-4;Q70EL4 V9GZ20 USP43 Ubiquitin carboxyl-terminal hydrolase 43 1 0 S(0.326)T(0.326)S(0.326)QS(0.021)IVSLLTGTAGEDEK 129.12 4.01E-09 0 14276 14482 11036 16770 15743 17968 25527 29483 17299 31464 TRUE FALSE FALSE 17451.64695 16175.54392 15118.67565 17686.10264 14175.57164 18908.7767 20072.94791 22252.24802 20770.75062 23620.60385 0.738831533 0.684806537 0.640063046 0.74875743 0.60013587 0.800520461 0.849806721 0.942069397 0.879348841 1 14.52775823 -6.721780789 1.837102679 0.931386624 0.683958711 0.817146964 0.052855761 0.137469199 0.950035249 0.0257475 0.016654425 1.90E-07 6.721780789 -0.247427913 S(ph)TSQSSESSVK ddPTM_HeLa_A485_30min_R1 1 STSQSSESSVK 11 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 1 0 S(0.167)T(0.167)S(0.167)QS(0.167)S(0.167)ES(0.167)SVK 67.548 0.015175 1142200000 469690 1853800 2853300 116990 1327400 1420100 559540 957530 1927400 201970 TRUE FALSE FALSE 574170.9201 2070585.784 3908854.406 123380.8675 1195239.395 1494454.24 439989.708 722694.2662 2314211.501 151622.596 3.786842696 13.65618212 25.7801575 0.813736677 7.882989916 9.856408475 2.901874256 4.766402141 15.26297242 1 17.21012525 -5.294575886 24.98579471 6.327535077 14.33258688 0.261784218 6.406158116 870.4895986 656370.0999 1.803772594 2.675620292 5.07E-06 5.294575886 8.005051806 S(ph)TSQSSESSVK ddPTM_HeLa_A486_30min_R1 2 STSQSSESSVK 11 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 1 0 S(0.167)T(0.167)S(0.167)QS(0.167)S(0.167)ES(0.167)S(0.001)VK;S(0.167)T(0.167)S(0.167)QS(0.167)S(0.167)ES(0.167)SVK ; 74.53 0.010687 1903180000 959730 2808600 6290800 78937 4781300 808230 503540 1077770 2586400 314740 TRUE FALSE FALSE 892457.8831 2586036.307 8726766.233 183769.3253 4181584.77 708518.8001 377548.9661 832385.2986 2810591.234 235927.0554 3.782770406 10.96116892 36.98925593 0.778924337 17.72405782 3.003126534 1.60027838 3.528146855 11.91296704 1 17.84798135 -6.268831706 24.63976398 4.203873316 14.41321568 0.209628718 9.538491645 776.8438586 2589331.998 3.341085227 3.005723514 5.38E-07 6.268831706 10.20934236 S(ph)TSRDRLDDIIVLTK ddPTM_HeLa_A485_30min_R1 2 STSRDRLDDIIVLTK 15 2 G5E9N8;Q7Z3D4-2;Q7Z3D4-3;Q7Z3D4 G5E9N8 LYSMD3 LysM and putative peptidoglycan-binding domain-containing protein 3 1 0 S(0.333)T(0.333)S(0.333)RDRLDDIIVLTK;S(0.333)T(0.333)S(0.333)RDRLDDIIVLTK ; 103.85 0.00016187 104441000 129785 130696 106662 160604 185338 160873 217348 247971 144127 312800 TRUE FALSE FALSE 158655.2255 145979.7603 146120.7124 169377.3898 166885.098 169296.0615 170909.8242 187155.7234 173051.9669 234824.7167 0.675632564 0.621654153 0.622254397 0.721292853 0.710679439 0.720946517 0.727818718 0.797001807 0.736941023 1 17.84122474 -14 0.119043074 2.005869828 0.55161693 0.906913893 0.031138141 41.70426285 0.322155131 10.01245348 0.309201636 1.00E-14 14 -1.454252898 S(ph)TSRDRLDDIIVLTK ddPTM_HeLa_A486_30min_R1 1 STSRDRLDDIIVLTK 15 2 G5E9N8;Q7Z3D4-2;Q7Z3D4-3;Q7Z3D4 G5E9N8 LYSMD3 LysM and putative peptidoglycan-binding domain-containing protein 3 1 0 S(0.333)T(0.333)S(0.333)RDRLDDIIVLTK 114.55 0.0001171 138950000 301920 309250 261660 117950 475700 341330 391600 373530 353630 407030 TRUE FALSE FALSE 280756.9671 284743.9037 362981.7595 274593.5609 416033.2703 299220.175 293617.5381 288485.3731 384282.9331 305107.0387 0.920191708 0.933259046 1.189686613 0.899990908 1.363564971 0.980705579 0.962342722 0.945521855 1.259502025 1 18.21895594 -4.636986501 10.24294944 1.069797218 0.92360826 0.145966613 0.143287605 0.57131822 48.12198539 0.035332231 0.093649551 2.31E-05 4.636986501 -0.146188957 S(ph)TSSPYHAGNLLQR ddPTM_HeLa_A485_30min_R1 1 STSSPYHAGNLLQR 14 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.265)T(0.265)S(0.235)S(0.235)PYHAGNLLQR 112.17 0.00017418 191480000 130420 205700 186090 100010 228830 178870 172200 192210 160670 153030 TRUE FALSE FALSE 159431.4791 229754.8256 254932.4349 105473.2931 206046.8817 188235.3566 135408.0633 145070.1961 192914.9952 114882.4373 1.387779392 1.999912528 2.219072304 0.918097627 1.793545528 1.638504205 1.178666352 1.262770877 1.679238357 1 16.80979874 -6.900697981 0.14547892 0.746281029 2.177980477 0.222336217 0.359790527 9.638113473 1.053352569 3.791671142 5.267679136 1.26E-07 6.900697981 1.431699448 S(ph)TSTPNVHMVSTTLPVDSR ddPTM_HeLa_A485_30min_R1 5 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.33)T(0.33)S(0.33)T(0.009)PNVHMVSTTLPVDSR;S(0.353)T(0.353)S(0.287)T(0.008)PNVHMVSTTLPVDSR;S(0.356)T(0.356)S(0.279)T(0.009)PNVHMVSTTLPVDSR;S(0.33)T(0.33)S(0.33)T(0.011)PNVHMVSTTLPVDSR;S(0.33)T(0.33)S(0.33)T(0.01)PNVHMVSTTLPVDSR ;;;; 178.69 4.02E-18 2597480000 532618 689421 653920 519915 838950 674880 846780 940930 609393 772020 TRUE FALSE FALSE 651097.0366 770042.7888 895832.2199 548316.64 755421.1923 710215.6732 665858.5354 710165.4422 731692.5854 579569.622 1.123414706 1.328645877 1.545685257 0.946075535 1.303417508 1.22541908 1.148884466 1.225332411 1.262475737 1 19.14462245 -13.99999998 0.189377929 7.58E-10 1.279577999 0.184686804 0.146626547 234.710574 2.293249998 88.69061702 0.402465899 1.00E-14 13.99999998 1.279577998 S(ph)TSTPNVHMVSTTLPVDSR ddPTM_HeLa_A486_30min_R1 8 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.329)T(0.329)S(0.329)T(0.012)PNVHMVSTTLPVDSR;S(0.33)T(0.33)S(0.33)T(0.011)PNVHMVSTTLPVDSR;S(0.352)T(0.352)S(0.281)T(0.015)PNVHMVSTTLPVDSR;S(0.36)T(0.36)S(0.279)T(0.001)PNVHMVSTTLPVDSR;S(0.329)T(0.329)S(0.329)T(0.014)PNVHMVSTTLPVDSR;S(0.33)T(0.33)S(0.33)T(0.011)PNVHMVSTTLPVDSR;S(0.359)T(0.359)S(0.279)T(0.003)PNVHMVSTTLPVDSR;S(0.355)T(0.355)S(0.284)T(0.006)PNVHMVSTTLPVDSR ;;;;;;; 201.63 1.15E-25 5998450000 1873942 2158888 1815997 587854 2422771 1925189 2457170 2149137 1825124 1997486 TRUE FALSE FALSE 1742588.343 1987809.852 2519199.672 1368553.82 2118884.47 1687678.755 1842360.077 1659825.42 1983327.218 1497302.504 1.163818492 1.327594021 1.682492125 0.914012911 1.415134526 1.127146151 1.230452812 1.108543809 1.324600214 1 20.51393429 -13.99999841 0.087691162 0.149858605 1.479566925 0.146247274 0.193806753 407.9851513 2.492493136 64.97087866 4.856047772 1.00E-14 13.99999841 1.32970832 S(ph)TSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK ddPTM_HeLa_A485_30min_R1 2 STSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 41 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.181)T(0.181)S(0.181)T(0.181)S(0.151)S(0.126)PVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK;S(0.167)T(0.167)S(0.167)T(0.167)S(0.167)S(0.167)PVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK ; 257.73 1.13E-65 1144960000 214260 215930 162210 228397 262370 227610 307810 368630 205915 320900 TRUE FALSE FALSE 261921.3978 241181.1352 222218.2291 240873.7498 236247.5216 239527.3076 242043.8789 278222.9145 247240.2517 240905.5357 1.087236941 1.001144015 0.922428903 0.999868056 0.980664562 0.994278969 1.004725268 1.154904613 1.026295436 1 17.87810802 -7.032158823 24.66591124 1.070323027 0.994165575 0.214852635 0.053018618 695.2823872 533280.5473 0.024379517 0.01409283 9.29E-08 7.032158823 -0.076157452 S(ph)TSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK ddPTM_HeLa_A486_30min_R1 1 STSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 41 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.181)T(0.181)S(0.181)T(0.181)S(0.15)S(0.124)PVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 228.98 4.81E-41 545010000 76268 93850 54880 24021 78518 89689 96502 101950 69538 98609 TRUE FALSE FALSE 70922.00705 86412.9842 76131.00574 55922.10195 68669.54029 78624.08307 72356.17891 78738.21055 75565.60983 73916.66456 0.95948603 1.169059572 1.029957266 0.75655608 0.929012973 1.063685483 0.978888581 1.065229485 1.022308167 1 16.17361204 -8.787265731 13.3024683 1.000016829 0.997498256 5.92E-05 0.102276727 0 0 0.106094389 0.025731669 1.63E-09 8.787265731 -0.002518573 S(ph)TTAHSWQR ddPTM_HeLa_A485_30min_R1 1 STTAHSWQR 9 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 S(0.78)T(0.11)T(0.11)AHSWQR 74.76 0.0085738 261550000 121170 175340 164790 103020 202290 152260 194750 207030 152190 155240 TRUE FALSE FALSE 148123.8485 195844.4877 225752.6785 108647.7217 182149.2973 160232.0982 153140.0715 156255.5679 182733.137 116541.525 1.270996312 1.680469582 1.937100776 0.932266175 1.562956185 1.374892753 1.314038679 1.340771608 1.567965899 1 16.83048457 -12.74355363 0.162104574 3.89E-14 1.569271198 0.204158378 0.256828308 136.3486763 1.831294257 47.10114186 1.121578097 1.80E-13 12.74355363 1.569271198 S(ph)TTAHSWQR ddPTM_HeLa_A486_30min_R1 1 STTAHSWQR 9 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 S(0.846)T(0.141)T(0.013)AHSWQR 155.98 2.73E-05 180640000 122710 191140 154930 38752 207060 144650 137050 148400 150770 127500 TRUE FALSE FALSE 114108.6627 175993.3703 214923.0452 90216.61442 181088.604 126804.5537 102758.6404 114612.5595 163838.865 95573.17011 1.193940334 1.841451634 2.248780122 0.943953353 1.89476402 1.326779823 1.075182923 1.199212702 1.714276766 1 16.54431805 -6.442186522 8.03234844 1.254934782 1.632573269 0.183828565 0.383425377 0.559316949 50.64890837 0.134554778 0.118312178 3.61E-07 6.442186522 0.377638487 S(ph)TTELDDYSTNK ddPTM_HeLa_A485_30min_R1 3 STTELDDYSTNK 12 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.883)T(0.116)T(0.001)ELDDYSTNK;S(0.977)T(0.02)T(0.003)ELDDYSTNK;S(0.98)T(0.01)T(0.01)ELDDYSTNK ;; 331.44 3.82E-73 527150000 873420 585680 601100 1510120 987240 670540 1009310 716220 766030 1882590 TRUE FALSE FALSE 1067709.266 654170.1813 823471.9039 1592614.032 888946.9192 705648.4375 793662.6732 540565.922 919765.1946 1413294.96 0.755475181 0.462868828 0.582661035 1.126880147 0.628988955 0.499293111 0.561569026 0.382486273 0.65079493 1 20.43063116 -8.048296094 22.36318018 1.000000004 0.621756592 0.249821869 0.193836707 5545.409321 2567761.556 0.198338661 0.051210822 8.95E-09 8.048296094 -0.378243412 S(ph)TTELDDYSTNK ddPTM_HeLa_A486_30min_R1 2 STTELDDYSTNK 12 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.993)T(0.006)TELDDYSTNK;S(0.991)T(0.009)TELDDYSTNK ; 210.41 1.64E-17 699160000 875450 1014800 571320 418430 891340 1253120 1316130 1199120 969820 1364060 TRUE FALSE FALSE 814085.4758 934383.5522 792550.4045 974126.1863 779539.8258 1098522.795 986820.3534 926106.5526 1053884.778 1022490.497 0.796179014 0.913831038 0.775117624 0.952699501 0.762393223 1.074359906 0.965114449 0.905736097 1.030703739 1 19.963656 -6.260810218 24.99997832 0.987412069 0.846794965 0.557730479 0.068770334 46.58436988 1851079.963 0.022217059 0.02097029 5.49E-07 6.260810218 -0.140617104 S(ph)TTPAEQRG ddPTM_HeLa_A485_30min_R1 1 STTPAEQRG 9 1 R4GN18;P15529-16;P15529-7;P15529-4;P15529-6;P15529-3;P15529-5;P15529-2 R4GN18 CD46 1 0 S(0.459)T(0.271)T(0.271)PAEQRG 84.738 0.0031577 0 291910 442150 267880 379180 298950 396470 396040 499280 364120 684000 TRUE FALSE FALSE 356844.3724 493855.5963 366979.9594 399893.6433 269185.4883 417228.5561 311422.8187 376830.7972 437195.5441 513491.3881 0.694937404 0.961760232 0.714675977 0.778773807 0.524225906 0.812532724 0.606481094 0.733860014 0.851417481 1 18.96998056 -8.012930001 2.818625541 0.998883632 0.72934116 0.374618097 0.110511648 0.280110746 5.370803144 0.106339033 0.028620544 9.71E-09 8.012930001 -0.269542471 S(ph)TTPANLDSESEHFFR ddPTM_HeLa_A485_30min_R1 3 STTPANLDSESEHFFR 16 0 Q13315 Q13315 ATM Serine-protein kinase ATM 1 0 S(0.373)T(0.373)T(0.255)PANLDSESEHFFR;S(0.371)T(0.371)T(0.257)PANLDSESEHFFR;S(0.333)T(0.333)T(0.333)PANLDSESEHFFR ;; 172.91 1.82E-12 294264000 124016 217815 274636 114348 247477 166311 189398 209429 204881 173770 TRUE FALSE FALSE 151602.9313 243286.5695 376235.285 120594.5417 222837.3209 175018.7868 148931.5701 158066.2094 245998.7374 130452.337 1.162132736 1.864946042 2.884082368 0.924433739 1.708189566 1.341630137 1.141655056 1.211677867 1.885736531 1 16.99316326 -5.301843692 24.99996221 1.335130115 1.959845407 0.282484352 0.477033197 668.9639036 413916.5902 0.133935569 0.198661003 4.99E-06 5.301843692 0.624715292 S(ph)TTPANLDSESEHFFR ddPTM_HeLa_A486_30min_R1 2 STTPANLDSESEHFFR 16 0 Q13315 Q13315 ATM Serine-protein kinase ATM 1 0 S(0.371)T(0.371)T(0.259)PANLDSESEHFFR;S(0.359)T(0.359)T(0.282)PANLDSESEHFFR ; 163.91 4.78E-12 189089000 152274 174455 141886 18938.9 177019 134196 148638 158789 141640 109495 TRUE FALSE FALSE 141600.3789 160630.5504 196828.059 44090.71632 154815.6264 117640.2619 111447.2003 122636.211 153917.4692 82076.73931 1.725219351 1.95707763 2.398097935 0.537188937 1.886230224 1.433295997 1.357841469 1.494165242 1.875287329 1 16.3246858 -5.221108391 24.9997093 1.413480753 2.019826124 0.355781758 0.402421532 605.8650781 375552.9476 0.10498536 0.181836889 6.01E-06 5.221108391 0.606345371 S(ph)TTPPPAEPVSLPQEPPK ddPTM_HeLa_A485_30min_R1 1 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.461)T(0.461)T(0.078)PPPAEPVSLPQEPPK 142.54 5.86E-08 175250000 126500 90008 83835 205800 130070 114720 180750 126860 106680 245040 TRUE FALSE FALSE 154639.4886 100533.6526 114849.0552 217042.3329 117119.7741 120726.5618 142131.2859 95747.38609 128089.6975 183956.0376 0.840632852 0.546509122 0.624328816 1.179859795 0.636672629 0.656279421 0.772637244 0.520490587 0.696306026 1 17.4890015 S(ph)TTPPPAEPVSLPQEPPK ddPTM_HeLa_A486_30min_R1 2 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPK;S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPK ; 161.24 5.68E-12 564120000 437960 461020 291149 197502 455280 536730 628480 579640 396340 682910 TRUE FALSE FALSE 407261.2656 424487.0962 403889.69 459794.6372 398174.5371 470513.7097 471227.6566 447668.6255 430695.0703 511904.891 0.795579946 0.829230397 0.788993614 0.898203251 0.777829132 0.919142829 0.920537516 0.874515234 0.8413576 1 18.96551627 -13.99999999 0.050367923 1.594158802 0.557056796 0.567736253 0.044331575 408.5072077 1.517591096 32.57657519 7.192010548 1.00E-14 13.99999999 -1.037102006 S(ph)TTPPPAEPVSLPQEPPKPR ddPTM_HeLa_A485_30min_R1 1 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPKPR 81.373 0.00095671 235240000 250160 274920 210850 330670 307810 283210 421740 413590 254780 439520 TRUE FALSE FALSE 305807.229 307069.5025 288852.1892 348733.6648 277163.3556 298038.4377 331631.8037 312156.404 305912.009 329955.7528 0.926812842 0.930638426 0.875427044 1.056910394 0.840001586 0.903267893 1.005079623 0.946055347 0.9271304 1 18.33191305 -13.99999988 0.156002602 1.24339289 0.916069732 0.111803314 0.057691767 312.4943437 2.836046467 23.41489454 0.261395528 1.00E-14 13.99999988 -0.327323158 S(ph)TTPPPAEPVSLPQEPPKPR ddPTM_HeLa_A486_30min_R1 1 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPKPR 98.3 0.00013736 893890000 312990 354880 195300 155890 326860 370660 439610 365010 235810 393920 TRUE FALSE FALSE 291051.0173 326758.0163 270925.3903 362919.7982 285862.171 324931.7378 329614.9283 281905.1911 256250.2007 295279.868 0.9856785 1.106604451 0.917520697 1.229070579 0.968105861 1.100419544 1.11627972 0.954705084 0.867821441 1 18.17172347 -7.401278544 5.661381366 0.927124056 1.06089285 0.276937977 0.088748254 0.270282777 11.28396341 0.047079906 0.02190547 3.97E-08 7.401278544 0.133768794 S(ph)TTPTSSPFR ddPTM_HeLa_A485_30min_R1 2 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.454)T(0.079)T(0.404)PT(0.047)S(0.013)S(0.002)PFR;S(0.663)T(0.104)T(0.233)PTSSPFR ; 219.35 6.44E-17 3468600000 2813940 3480000 3012650 2600150 3743490 3096650 3647390 3845990 2718920 3535570 TRUE FALSE FALSE 3439891.245 3886955.728 4127154.602 2742189.611 3370774.991 3258785.806 2868095.33 2902754.922 3264582.305 2654217.466 1.296009573 1.464445087 1.554942146 1.033144287 1.269969411 1.22777649 1.080580384 1.093638694 1.229960373 1 21.33985515 -5.261690484 24.99999291 1.144882244 1.441063554 0.650149076 0.102249272 14.09570716 1403431.61 0.028227752 0.045038467 5.47E-06 5.261690484 0.29618131 S(ph)TTPTSSPFR ddPTM_HeLa_A486_30min_R1 2 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.668)T(0.107)T(0.141)PT(0.06)S(0.021)S(0.002)PFR;S(0.744)T(0.128)T(0.128)PTSSPFR ; 131.09 7.55E-05 1190700000 1709400 1768040 1452800 457620 1894310 1433400 1616710 1613840 1433820 1423880 TRUE FALSE FALSE 1589579.887 1627934.071 2015363.067 1065362.487 1656707.976 1256561.682 1212192.058 1246403.862 1558104.672 1067331.18 1.489303336 1.525237997 1.888226546 0.998155499 1.552196738 1.177293145 1.135722521 1.167776118 1.459813693 1 20.02557647 -5.26441142 24.99996083 1.229410905 1.62335416 0.495979923 0.19401832 223.1824604 1877349.99 0.052518632 0.081822856 5.44E-06 5.26441142 0.393943255 S(ph)TTTGHLIYK ddPTM_HeLa_A485_30min_R1 3 STTTGHLIYK 10 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A6PW80;Q5JR01;A0A2R8Y660;A0A2R8YDN5 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 1 0 S(0.947)T(0.035)T(0.012)T(0.005)GHLIYK;S(0.786)T(0.111)T(0.033)T(0.069)GHLIYK;S(0.483)T(0.483)T(0.026)T(0.009)GHLIYK ;; 120.53 0.0001786 334519000 690210 906340 710820 925000 963070 896950 966670 1004030 810190 1109770 TRUE FALSE FALSE 843744.8333 1012328.579 973781.8977 975530.4078 867183.3693 943912.9151 760133.0575 757790.0682 972787.7015 833124.7628 1.012747275 1.215098415 1.168830818 1.170929555 1.04088056 1.132979065 0.912388026 0.909575735 1.167637484 1 19.66817303 -6.365769251 1.731495948 0.996157294 1.141509618 0.274005614 0.090979987 0.436629012 2.595405846 0.039836486 0.033653648 4.31E-07 6.365769251 0.145352324 S(ph)TTTGHLIYK ddPTM_HeLa_A486_30min_R1 3 STTTGHLIYK 10 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A6PW80;Q5JR01;A0A2R8Y660;A0A2R8YDN5 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 1 0 S(0.997)T(0.003)TTGHLIYK;S(0.485)T(0.485)T(0.025)T(0.006)GHLIYK;S(0.498)T(0.498)T(0.003)T(0.001)GHLIYK ;; 160.22 4.48E-07 443520000 1459830 1312940 905070 345952 1303700 1335900 1317470 1345840 1239880 1269010 TRUE FALSE FALSE 1357503.456 1208897.853 1255537.343 805393.7394 1140177.789 1171090.24 987825.0712 1039421.611 1347353.797 951241.6361 1.427085826 1.270863056 1.319893174 0.84667629 1.198620567 1.231117516 1.038458614 1.092699869 1.416415919 1 19.85945234 -5.04394551 24.99969378 1.123055054 1.335575833 0.323483497 0.146838627 531.7761737 302515.8132 0.039205722 0.067911588 9.04E-06 5.04394551 0.212520779 S(ph)TVLGLPQHVQK ddPTM_HeLa_A485_30min_R1 3 STVLGLPQHVQK 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.984)T(0.016)VLGLPQHVQK;S(0.955)T(0.045)VLGLPQHVQK;S(0.833)T(0.167)VLGLPQHVQK ;; 129.77 2.24E-05 416780000 815540 814420 553590 833680 817380 905420 1086490 1123150 662880 1199130 TRUE FALSE FALSE 996954.0594 909659.3345 758385.9778 879221.8274 735998.7772 952826.3912 854352.5357 847695.7015 795913.9357 900208.9594 1.107469604 1.010497979 0.842455488 0.976686377 0.817586594 1.058450242 0.949060245 0.94166548 0.88414354 1 19.7799004 -4.502906807 5.09205951 0.933323562 1.089710458 0.384857859 0.068447473 0.172645255 12.65503786 0.016674399 0.060220196 3.14E-05 4.502906807 0.156386896 S(ph)TVLGLPQHVQK ddPTM_HeLa_A486_30min_R1 3 STVLGLPQHVQK 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.976)T(0.024)VLGLPQHVQK;S(0.978)T(0.022)VLGLPQHVQK;S(0.5)T(0.5)VLGLPQHVQK ;; 146.96 1.26E-07 520230000 984840 1028170 622660 405970 972590 988810 1235030 1125050 787130 1154050 TRUE FALSE FALSE 915807.8017 946694.0647 863770.6274 945118.6766 850598.6932 866820.6757 926012.4312 868900.6747 855359.0622 865068.3684 1.058653669 1.094357509 0.99849984 1.092536395 0.983273374 1.002025629 1.070449996 1.004430062 0.988776256 1 19.72245463 -2.4132577 0.237676646 0.996478771 1.257714273 0.277569658 0.035775552 34.53945663 0.819596039 0.050899877 3.090695261 0.003861378 2.4132577 0.261235502 S(ph)VAS(ph)S(ph)QPAKPTK ddPTM_HeLa_A485_30min_R1 1 SVASSQPAKPTK 12 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 3 0 S(1)VAS(1)S(0.984)QPAKPT(0.016)K 89.911 0.00049047 0 116580 99934 62096 168830 132250 123760 194890 169500 86829 223990 TRUE FALSE FALSE 142512.8188 111620.412 85067.89443 178052.7554 119082.7256 130239.8822 153250.1594 127929.8592 104254.7839 168153.4152 0.847516648 0.66380104 0.505894539 1.058870884 0.708179049 0.774530104 0.911371079 0.760792512 0.619998016 1 17.35941856 -11.58618486 2.202188394 5.634716184 0.762832383 0.19173168 0.147046892 3944467.339 445939.3858 90818670.14 0.036496174 2.59E-12 11.58618486 -4.871883801 S(ph)VAS(ph)SQPAKPTK ddPTM_HeLa_A485_30min_R1 3 SVASSQPAKPTK 12 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 S(1)VAS(0.967)S(0.032)QPAKPT(0.001)K;S(1)VAS(0.978)S(0.022)QPAKPTK;S(1)VAS(0.98)S(0.02)QPAKPTK ;; 163.62 1.09E-09 1550240000 2933200 2238000 1459770 3427570 2909500 2817440 4281850 3911520 2138740 4533470 TRUE FALSE FALSE 3585680.221 2499714.632 1999799.669 3614809.47 2619819.964 2964956.802 3366997.768 2952213.587 2567965.5 3403359.361 1.053570852 0.73448448 0.587595801 1.062129821 0.76977471 0.871185346 0.98931597 0.867441041 0.754538451 1 21.69852806 -5.271352494 24.9975997 0.893369699 0.786143778 0.111370542 0.140846446 1569.83292 3958596.795 0.039412169 0.059259184 5.35E-06 5.271352494 -0.107225921 S(ph)VAS(ph)SQPAKPTK ddPTM_HeLa_A486_30min_R1 3 SVASSQPAKPTK 12 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 S(1)VAS(0.834)S(0.166)QPAKPTK;S(1)VAS(0.854)S(0.146)QPAKPTK;S(0.999)VAS(0.835)S(0.166)QPAKPTK ;; 111.22 0.0004346 1787880000 2249080 2223320 1118280 1031260 2105400 2411870 3102840 2773850 1715660 2869580 TRUE FALSE FALSE 2091431.106 2047136.026 1551307.965 2400825.397 1841321.1 2114318.001 2326476.614 2142304.908 1864374.79 2151018.49 0.972298061 0.951705453 0.721196945 1.116134244 0.856022907 0.982938088 1.081569789 0.99594909 0.866740476 1 21.0365885 -5.274981698 24.99968517 0.983939307 0.888730662 0.189023196 0.098247375 1391.653077 2569047.158 0.027508261 0.041052918 5.31E-06 5.274981698 -0.095208645 S(ph)VASSQPAKPTK ddPTM_HeLa_A485_30min_R1 3 SVASSQPAKPTK 12 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.999)VASSQPAKPTK;S(0.992)VAS(0.006)S(0.002)QPAKPTK;S(0.98)VAS(0.02)SQPAKPTK ;; 167.69 9.31E-11 1970220000 1678500 1540950 1031911 1980480 1880540 1977400 2387610 2375130 1463170 2801470 TRUE FALSE FALSE 2051876.534 1721150.698 1413657.82 2088668.608 1693306.835 2080933.606 1877477.619 1792625.643 1756814.798 2103115.086 0.975636829 0.818381604 0.672173306 0.993130914 0.805142261 0.989453036 0.892712734 0.85236688 0.835339354 1 21.00409637 -6.22541073 24.96486743 0.903418582 0.84872671 0.083720413 0.097486342 1802.626154 1249070.675 0.032292107 0.032291403 5.95E-07 6.22541073 -0.054691872 S(ph)VASSQPAKPTK ddPTM_HeLa_A486_30min_R1 3 SVASSQPAKPTK 12 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.997)VAS(0.001)S(0.001)QPAKPTK;S(0.998)VAS(0.001)S(0.001)QPAKPTK;S(0.986)VAS(0.013)S(0.001)QPAKPTK ;; 104.21 0.0003004 2526280000 2076230 1939360 1003395 758344 1933950 1958830 2218940 2191030 1622729 2453860 TRUE FALSE FALSE 1930696.999 1785678.051 1391936.416 1765463.157 1691375.958 1717169.471 1663737.742 1692180.299 1763388.456 1839397.484 1.049635555 0.970795092 0.756734979 0.959805138 0.919527167 0.933549972 0.904501478 0.919964452 0.958677214 1 20.81080184 -8.009520714 3.02367465 0.999768304 0.922984549 0.096788475 0.069152966 0.577252698 12.9520091 0.067378918 0.018029466 9.78E-09 8.009520714 -0.076783755 S(ph)VDEIAK ddPTM_HeLa_A485_30min_R1 2 SVDEIAK 7 0 A6ND36;A6ND36-2 A6ND36 FAM83G Protein FAM83G 1 0 S(1)VDEIAK;S(1)VDEIAK ; 107.15 0.0032916 157656000 270600 196826 185613 421300 324230 245430 383360 355680 269010 618090 TRUE FALSE FALSE 330794.0364 219843.0885 254278.9727 444314.5522 291948.5228 258280.3353 301452.0042 268448.9223 322997.8395 464011.5381 0.712900455 0.473787978 0.5480014 0.957550655 0.629183757 0.556624812 0.649664889 0.578539326 0.696098724 1 18.82380115 -8.047511598 15.08352931 1.000000005 0.637755526 0.432192011 0.123758193 41.59564149 13206.58533 0.123184204 0.031807006 8.96E-09 8.047511598 -0.362244479 S(ph)VDEIAK ddPTM_HeLa_A486_30min_R1 2 SVDEIAK 7 0 A6ND36;A6ND36-2 A6ND36 FAM83G Protein FAM83G 1 0 S(1)VDEIAK;S(1)VDEIAK ; 131.44 0.00166 134149000 316510 358930 170007 173124 319510 498930 563910 564580 358250 592820 TRUE FALSE FALSE 294324.2835 330487.0796 235838.2633 403041.4212 279434.0765 437377.0893 422813.7536 436037.4587 389303.3984 444374.0134 0.662334598 0.743713785 0.530720196 0.906986928 0.628826322 0.984254426 0.951481727 0.981239779 0.876071477 1 18.76141493 -6.267430019 24.98771376 0.956991494 0.699953687 0.660222747 0.094684413 301.1775926 1256245.854 0.031470257 0.028466646 5.40E-07 6.267430019 -0.257037807 S(ph)VDEVNYWDK ddPTM_HeLa_A485_30min_R1 2 SVDEVNYWDK 10 0 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 S(1)VDEVNYWDK;S(1)VDEVNYWDK ; 190.1 6.62E-10 720750000 862750 524820 330720 889550 388320 450870 588410 396820 447720 1128630 TRUE FALSE FALSE 1054665.761 586193.1337 453067.0904 938143.864 349657.4973 474476.856 462691.3966 299499.2728 537573.2973 847283.3119 1.244761636 0.691850206 0.534729156 1.107237509 0.412680732 0.559997877 0.546088174 0.35348185 0.634466996 1 19.69248493 -1.82149949 1.14553561 0.607695402 199.9999345 0.369695178 0.228652646 510.360491 2.821844721 0.067543257 264886.7653 0.015083444 1.82149949 199.3922391 S(ph)VDEVNYWDK ddPTM_HeLa_A486_30min_R1 3 SVDEVNYWDK 10 0 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 S(1)VDEVNYWDK;S(1)VDEVNYWDK;S(1)VDEVNYWDK ;; 151.7 3.29E-06 491310000 1026120 1022910 307799 186799 402910 671220 629520 544770 580970 823640 TRUE FALSE FALSE 954194.2869 941850.8862 426987.0159 434877.5123 352373.2708 588411.7009 472007.4376 420737.7632 631328.9474 617395.183 1.545516248 1.525523542 0.691594343 0.704374644 0.570741853 0.953055218 0.764514286 0.681472378 1.022568631 1 19.2358347 -4.756889172 24.99551056 0.779968632 1.535520284 0.80888773 0.143062271 41.31301414 226935.5365 0.035919083 0.08857096 1.75E-05 4.756889172 0.755551652 S(ph)VDEVNYWDKQDHPISR ddPTM_HeLa_A485_30min_R1 2 SVDEVNYWDKQDHPISR 17 1 F5H5P2;P12694;P12694-2 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 S(0.997)VDEVNY(0.003)WDKQDHPISR;S(1)VDEVNYWDKQDHPISR ; 199.7 2.54E-25 1361350000 1211540 1175380 721110 979210 916910 1143550 1383080 1298810 829370 1562880 TRUE FALSE FALSE 1481042.893 1312830.467 987878.5969 1032701.763 825619.2209 1203424.51 1087573.659 980274.811 995816.9516 1173282.779 1.262306854 1.118937813 0.841978264 0.880181472 0.703683064 1.025690082 0.926949308 0.835497485 0.848744198 1 20.16211934 -4.607004086 3.382006311 0.876952834 1.242019217 0.678864811 0.086890249 0.128187788 2.797172018 0.022806506 0.078360998 2.47E-05 4.607004086 0.365066383 S(ph)VDEVNYWDKQDHPISR ddPTM_HeLa_A486_30min_R1 6 SVDEVNYWDKQDHPISR 17 1 F5H5P2;P12694;P12694-2 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 S(1)VDEVNYWDKQDHPISR;S(1)VDEVNYWDKQDHPISR;S(1)VDEVNYWDKQDHPISR;S(1)VDEVNYWDKQDHPISR;S(1)VDEVNYWDKQDHPISR;S(1)VDEVNYWDKQDHPISR ;;;;; 229.89 7.11E-35 2752764000 1535180 1296247 576102 291739 853649 909811 1122575 1002231 836200 1228140 TRUE FALSE FALSE 1427571.81 1193527.667 799184.1229 679183.1357 746576.3825 797567.7691 841694.8616 774044.8798 908682.4893 920605.7502 1.550687479 1.296459062 0.868106812 0.737756782 0.810962111 0.866351062 0.914283733 0.840799528 0.987048461 1 19.81222393 -4.620169933 2.943096777 0.863753407 1.522542118 0.894844891 0.076884423 0.074384315 1.226332092 0.021074923 0.078190522 2.40E-05 4.620169933 0.658788711 S(ph)VDFDSLTVR ddPTM_HeLa_A485_30min_R1 6 SVDFDSLTVR 10 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(0.999)VDFDS(0.001)LTVR;S(1)VDFDSLTVR ;;;;; 193.32 3.50E-10 1027280000 639220 782887 727396 659688 793990 662869 875021 941392 585049 804425 TRUE FALSE FALSE 781412.2837 874438.8244 996490.0499 695725.085 714937.5677 697575.7958 688065.6151 710514.136 702462.9679 603896.6518 1.29395035 1.447994159 1.650100306 1.152059848 1.183874038 1.155124463 1.139376436 1.176549222 1.163217192 1 19.20394215 -5.287313543 23.75315621 1.148563588 1.462412826 0.7152096 0.09395194 205.5805545 188727.7781 0.026170024 0.038835527 5.16E-06 5.287313543 0.313849238 S(ph)VDFDSLTVR ddPTM_HeLa_A486_30min_R1 6 SVDFDSLTVR 10 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(0.999)VDFDS(0.001)LTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR ;;;;; 206.36 5.70E-14 1087879000 857444 1015755.4 865996.2 393569.5 1102925.2 900743.7 1077870.2 1026472.2 822163.4 1063666.5 TRUE FALSE FALSE 797341.6034 935263.2428 1201333.121 916249.6859 964586.037 789619.1004 808175.6754 792766.8878 893429.1855 797317.4851 1.000030249 1.173012332 1.506718645 1.149165424 1.209789143 0.990344643 1.013618402 0.994292616 1.120543826 1 19.60479478 -6.252802249 21.73147233 1.022769342 1.219169182 0.359114182 0.122413175 121.8022874 306459.7154 0.042423979 0.04163652 5.59E-07 6.252802249 0.19639984 S(ph)VDIHDSIQPR ddPTM_HeLa_A485_30min_R1 4 SVDIHDSIQPR 11 0 Q9Y6D6;E5RHL7;E5RIF2 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 0 S(1)VDIHDSIQPR;S(1)VDIHDSIQPR;S(1)VDIHDSIQPR;S(1)VDIHDSIQPR ;;; 172.57 1.84E-08 1556300000 820720 1877530 1851670 290032 2036690 859450 1211900 1143450 1088900 660240 TRUE FALSE FALSE 1003286.333 2097090.801 2536679.787 305875.7138 1833909.992 904449.473 952967.6647 863017.0946 1307432.242 495654.3188 2.02416542 4.23095436 5.117840582 0.617114998 3.699977833 1.824758584 1.92264574 1.741167305 2.637790477 1 18.91897478 -5.259105097 24.99988705 2.021621441 3.834983481 0.388942023 1.068722557 216.6245531 2320009.049 0.286235598 0.4670416 5.51E-06 5.259105097 1.81336204 S(ph)VDIHDSIQPR ddPTM_HeLa_A486_30min_R1 3 SVDIHDSIQPR 11 0 Q9Y6D6;E5RHL7;E5RIF2 Q9Y6D6 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 1 0 S(1)VDIHDSIQPR;S(1)VDIHDSIQPR;S(1)VDIHDSIQPR ;; 192.14 4.29E-11 930890000 745620 821590 804280 48398.3 885160 415961 517130 502800 765680 178577 TRUE FALSE FALSE 693355.8884 756484.2162 1115718.755 112673.6883 774134.979 364643.961 387738.6044 388323.416 832049.7589 133860.1569 5.179703241 5.651302329 8.334957776 0.841726851 5.783162049 2.72406644 2.896594576 2.900963402 6.215813416 1 17.03036708 -5.255670024 24.99830263 3.349656946 6.3149191 0.394824702 1.804301042 504.049172 2184011.423 0.47168612 0.789224772 5.55E-06 5.255670024 2.965262153 S(ph)VEAAAELSAK ddPTM_HeLa_A485_30min_R1 2 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(1)VEAAAELSAK;S(1)VEAAAELSAK ; 194.06 3.53E-11 408000000 725960 641610 458130 770220 550610 655820 845450 681330 514450 988320 TRUE FALSE FALSE 887447.2975 716640.7082 627611.3514 812295.1683 495789.3351 690157.7211 664812.7008 514232.7492 617695.3962 741950.0127 1.196101196 0.965888127 0.845894387 1.094811179 0.668224714 0.930194365 0.896034355 0.693082742 0.832529666 1 19.50096247 -1.000000002 0.679488516 0.843701816 38.5563056 0.397187297 0.121130722 249.3132607 1.435027821 0.047283169 14230.14122 0.1 1.000000002 37.71260379 S(ph)VEAAAELSAK ddPTM_HeLa_A486_30min_R1 2 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(1)VEAAAELSAK;S(1)VEAAAELSAK ; 185.57 1.39E-10 441540000 733910 667250 319450 257880 451860 657640 704100 610190 586860 1008630 TRUE FALSE FALSE 682466.6989 614374.6799 443149.5952 600357.6725 395183.5054 576507.0632 527926.7328 471263.0574 637729.4973 756062.4829 0.902659125 0.81259776 0.58612827 0.794058277 0.522686305 0.762512459 0.698258074 0.623312316 0.843487822 1 19.52814594 -8.011860373 5.332511703 0.999824349 0.710035285 0.414618413 0.10755188 0.138239333 15.91611127 0.102865994 0.026767242 9.73E-09 8.011860373 -0.289789065 S(ph)VEDDAEGHLIYHVGDWLQER ddPTM_HeLa_A485_30min_R1 2 SVEDDAEGHLIYHVGDWLQER 21 0 B1AVT0;P49760-3;P49760 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER ; 275.69 9.36E-73 102945000 26973 28909 29809 34071 39129 31565 46112 40518 31739 44138 TRUE FALSE FALSE 32973.05079 32289.65608 40836.58956 35932.21246 35233.17937 33217.69459 36259.7945 30580.89697 38108.72617 33135.2089 0.995106169 0.974481742 1.232422879 1.084411828 1.063315444 1.002489367 1.09429805 0.922912454 1.150097659 1 15.01607739 -6.039476506 9.683955088 1.032879053 1.075882839 0.04217089 0.085436735 1.888916866 453.9470229 0.02822422 0.028478464 9.13E-07 6.039476506 0.043003786 S(ph)VEDDAEGHLIYHVGDWLQER ddPTM_HeLa_A486_30min_R1 4 SVEDDAEGHLIYHVGDWLQER 21 0 B1AVT0;P49760-3;P49760 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER ;;; 317.72 2.66E-102 181931000 74483 97249 87661 29999.6 116137 93679 97956 87967 98624 104343 TRUE FALSE FALSE 69262.12633 89542.63507 121605.6868 69840.5849 101570.0145 82121.83744 73446.37273 67938.83441 107172.8077 78214.83364 0.885536964 1.144829323 1.554765013 0.89293273 1.298602961 1.04995221 0.939033804 0.868618282 1.370236344 1 16.25515462 -6.492636193 23.5704351 1.027947805 1.163554199 0.057188173 0.217577199 928.669843 723787.4338 0.075900373 0.066821406 3.22E-07 6.492636193 0.135606394 S(ph)VEDDEEGHLICQSGDVLSAR ddPTM_HeLa_A485_30min_R1 3 SVEDDEEGHLICQSGDVLSAR 21 0 F8WBF5;P49759;P49759-3 F8WBF5 CLK1 Dual specificity protein kinase CLK1 1 0 S(1)VEDDEEGHLICQSGDVLSAR;S(1)VEDDEEGHLICQSGDVLSAR;S(1)VEDDEEGHLICQSGDVLSAR ;; 287.82 1.21E-73 1202450000 298956 332482 404768 392398 529440 382681 487997 487443 335278 519130 TRUE FALSE FALSE 365457.7308 371362.8777 554508.527 413833.7091 476727.0946 402717.5854 383732.4544 367896.84 402565.2192 389720.4449 0.937743287 0.95289555 1.422836637 1.061873234 1.223254004 1.033349907 0.984635165 0.944001899 1.032958944 1 18.57208009 -6.4864347 8.23647028 0.988866616 1.124663752 0.180859803 0.130811154 0.537737777 112.5588341 0.048292382 0.041865914 3.26E-07 6.4864347 0.135797136 S(ph)VEDDKEGHLVCR ddPTM_HeLa_A485_30min_R1 3 SVEDDKEGHLVCR 13 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BQG1 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)VEDDKEGHLVCR;S(1)VEDDKEGHLVCR;S(1)VEDDKEGHLVCR ;; 209.31 4.64E-22 1577330000 1641740 1247610 855380 2442210 1474360 1495680 2355030 1857750 1129190 3087730 TRUE FALSE FALSE 2006939.399 1393507.137 1171820.657 2575621.748 1327567.542 1573991.492 1851858.602 1402133.9 1355808.075 2318015.736 0.865800593 0.601163795 0.505527482 1.111132124 0.572717226 0.67902537 0.798898201 0.60488541 0.58490029 1 21.14445893 -9.944494362 4.178600732 1.000011053 0.701338267 0.213651441 0.171106921 111444833.6 261719846.4 19813.62444 0.041711269 1.14E-10 9.944494362 -0.298672786 S(ph)VEDDKEGHLVCR ddPTM_HeLa_A486_30min_R1 2 SVEDDKEGHLVCR 13 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BQG1 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)VEDDKEGHLVCR;S(1)VEDDKEGHLVCR ; 199.61 1.20E-21 1395700000 1489960 1686180 628500 686240 1073600 1682650 2017700 1861770 1307220 2739600 TRUE FALSE FALSE 1385521.498 1552560.956 871872.0318 1597601.401 938939.0771 1475061.751 1512850.119 1437885.613 1420530.882 2053586.328 0.674683834 0.756024198 0.424560692 0.777956777 0.45721919 0.718285728 0.736686887 0.700182697 0.691731759 1 20.96971417 -9.312257426 0.412558329 1.073464562 0.627851592 0.468253973 0.112028502 5.725261667 1.04838585 0.735505563 0.070797993 4.87E-10 9.312257426 -0.445612971 S(ph)VEDVRPHHTDANNQSACFEAPDQK ddPTM_HeLa_A485_30min_R1 4 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.954)VEDVRPHHT(0.046)DANNQSACFEAPDQK;S(1)VEDVRPHHTDANNQSACFEAPDQK;S(1)VEDVRPHHTDANNQSACFEAPDQK;S(0.961)VEDVRPHHT(0.038)DANNQS(0.001)ACFEAPDQK ;;; 196.15 9.67E-22 7503290000 2738600 2647770 2010660 2681600 3888040 2832680 4207850 3985370 2766510 4555520 TRUE FALSE FALSE 3347792.122 2957403.669 2754486.805 2828089.018 3500933.086 2980994.745 3308808.473 3007951.759 3321723.181 3419912.702 0.978911573 0.864759988 0.805426057 0.826947722 1.023690775 0.87165814 0.967512554 0.879540509 0.971288881 1 21.70552807 -5.739872623 24.99975411 0.942989226 0.864165865 0.295141939 0.061872132 326.8973003 378931.2502 0.018135989 0.023392552 1.82E-06 5.739872623 -0.078823362 S(ph)VEDVRPHHTDANNQSACFEAPDQK ddPTM_HeLa_A486_30min_R1 2 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.904)VEDVRPHHT(0.051)DANNQS(0.045)ACFEAPDQK;S(0.998)VEDVRPHHT(0.002)DANNQSACFEAPDQK ; 149.29 2.07E-09 1049350000 969640 952220 500090 83133 874330 942610 1178210 1055190 840630 880030 TRUE FALSE FALSE 901673.2432 876762.6193 693738.2409 193537.8253 764663.3786 826320.362 883409.3962 814946.2716 913496.4852 659664.76 1.366865866 1.329103315 1.051652723 0.293388153 1.159169665 1.252636812 1.339179307 1.235394584 1.384788973 1 19.33137351 -5.991213849 24.99912534 1.256798955 0.997271605 0.124232497 0.288913579 422.6598495 1202579.645 0.096914372 0.109737126 1.02E-06 5.991213849 -0.259527351 S(ph)VEEPTQPGGTGLSDSR ddPTM_HeLa_A485_30min_R1 1 SVEEPTQPGGTGLSDSR 17 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 S(1)VEEPTQPGGTGLSDSR 107.51 0.00019003 218320000 47918 72815 66343 61566 99584 65034 86240 73683 67767 75901 TRUE FALSE FALSE 58577.19378 81330.08084 90886.03646 64929.19469 89669.0673 68439.07968 67814.11948 55612.12872 81367.2153 56980.27755 1.028025771 1.427337393 1.595043765 1.139502956 1.573686039 1.201101199 1.19013319 0.975989081 1.427989101 1 15.79817503 -6.500812721 23.88867305 1.153539747 1.361372973 0.194270091 0.199031924 700.4868629 758348.9163 0.067882505 0.059300746 3.16E-07 6.500812721 0.207833226 S(ph)VELDLNQAHMEETPK ddPTM_HeLa_A485_30min_R1 6 SVELDLNQAHMEETPK 16 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK ;;;;; 330.89 9.50E-91 2198799000 2195623 1891781 1432078 2960652 2388899 2272465 3428640 3031982 1856036 4256964 TRUE FALSE FALSE 2684031.762 2113008.332 1961863.246 3122384.922 2151051.828 2391447.754 2696083.055 2288383.661 2228525.401 3195781.218 0.839867181 0.661186792 0.6138916 0.977033379 0.673091079 0.748313977 0.843638181 0.716063931 0.697333531 1 21.60773721 -10.79913698 2.806917703 1.067891006 0.751308173 0.345520728 0.102277501 28861442.79 22252009.97 13356326.94 0.024536859 1.59E-11 10.79913698 -0.316582833 S(ph)VELDLNQAHMEETPK ddPTM_HeLa_A486_30min_R1 4 SVELDLNQAHMEETPK 16 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK ;;; 332.71 8.27E-91 1592785000 2324867 2221054 1084314 1081998 1966760 2426845 3068914 2734752 1874981 3417660 TRUE FALSE FALSE 2161905.829 2045049.592 1504189.42 2518946.025 1720070.621 2127445.538 2301039.258 2112108.669 2037505.863 2561855.691 0.843882751 0.798268848 0.58714838 0.983250553 0.671415891 0.830431451 0.898192379 0.824444826 0.795324214 1 21.28875778 -14 0.170528045 1.7837044 0.755597497 0.255565313 0.103226141 180.895717 1.707211309 47.77035656 0.359703894 1.00E-14 14 -1.028106902 S(ph)VENLPECGITHEQR ddPTM_HeLa_A485_30min_R1 6 SVENLPECGITHEQR 15 0 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;F8W860;Q9UBF8-3 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(0.998)VENLPECGIT(0.002)HEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR ;;;;; 215.11 4.49E-27 10805500000 2630060 3168040 3117760 3059670 4183610 3197080 3881230 4099990 3042510 4007990 TRUE FALSE FALSE 3215107.773 3538514.72 4271149.165 3226812.025 3767075.099 3364474.165 3051973.504 3094461.024 3653113.849 3008871.855 1.068542606 1.17602706 1.419518468 1.07243252 1.251989211 1.118184598 1.014324854 1.028445601 1.214114135 1 21.52079123 -6.480582224 5.49307178 1.066148701 1.201110452 0.256456531 0.107463721 0.284710662 21.70086933 0.039109396 0.033385214 3.31E-07 6.480582224 0.134961752 S(ph)VENLPECGITHEQR ddPTM_HeLa_A486_30min_R1 6 SVENLPECGITHEQR 15 0 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;F8W860;Q9UBF8-3 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(0.988)VENLPECGIT(0.012)HEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR ;;;;; 269.39 2.31E-51 14695330000 2935850 3463580 2620470 1216152 3764010 3440600 3667310 3592320 2872380 3231850 TRUE FALSE FALSE 2730062.076 3189113.307 3635186.163 2831263.317 3291892.768 3016133.753 2749710.249 2774427.156 3121360.211 2422573.724 1.126926313 1.316415379 1.500547177 1.16870058 1.35884111 1.245012163 1.135036768 1.145239515 1.288447976 1 21.20810914 -6.59339777 4.229985588 1.155126774 1.300434696 0.27467978 0.11563961 0.310360519 10.91904192 0.04514755 0.034672811 2.55E-07 6.59339777 0.145307922 S(ph)VENQESVEIINDLK ddPTM_HeLa_A486_30min_R1 2 SVENQESVEIINDLK 15 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 S(0.877)VENQES(0.123)VEIINDLK;S(1)VENQESVEIINDLK ; 100.35 0.00034594 0 40338 40366 31145 24935 43896 40062 55982 53259 34748 55342 TRUE FALSE FALSE 37510.51451 37167.25115 43205.17809 58049.94015 38390.15437 35119.55776 41974.71148 41133.08834 37759.98462 41484.00298 0.904216368 0.895941772 1.041490092 1.39933314 0.925420683 0.846580736 1.011828861 0.991540965 0.910230014 1 15.34026749 S(ph)VEPQDAGPLER ddPTM_HeLa_A485_30min_R1 2 SVEPQDAGPLER 12 0 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 S(1)VEPQDAGPLER;S(1)VEPQDAGPLER ; 114.64 0.00029364 954820000 298100 353450 362290 402050 468440 377210 591220 516450 371150 654690 TRUE FALSE FALSE 364411.3166 394782.9029 496316.1471 424012.9735 421800.4688 396960.1323 464901.0172 389789.8277 445636.4006 491487.8317 0.741445247 0.803240441 1.009823876 0.862713065 0.858211418 0.807670316 0.945905447 0.793081339 0.906708919 1 18.90679617 -14 0.229607012 1.740335506 0.845306697 0.260500421 0.07420138 245.8795707 2.461774127 84.64099541 0.132450124 1.00E-14 14 -0.895028809 S(ph)VEPQDAGPLER ddPTM_HeLa_A486_30min_R1 2 SVEPQDAGPLER 12 0 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 S(1)VEPQDAGPLER;S(1)VEPQDAGPLER ; 117.2 0.00021777 1197970000 764270 899040 610180 333950 971550 879520 995470 1010150 724550 1159250 TRUE FALSE FALSE 710698.6197 827796.7962 846458.0372 777452.4769 849689.1397 771013.7647 746392.877 780160.8964 787354.5774 868966.2545 0.817866765 0.952622489 0.974097708 0.894686615 0.977816037 0.887276992 0.858943455 0.897803444 0.90608188 1 19.72894063 -11.56668865 2.018749352 2.252148694 0.91014214 0.25318322 0.047477489 4686471.426 238965.8393 26908161.53 0.012028335 2.71E-12 11.56668865 -1.342006554 S(ph)VEYEGDLK ddPTM_HeLa_A485_30min_R1 4 SVEYEGDLK 9 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(1)VEYEGDLK;S(1)VEYEGDLK;S(1)VEYEGDLK;S(1)VEYEGDLK ;;; 134.13 0.00020158 1410100000 1690810 1341870 966240 2296230 1527370 1431240 2206590 1741460 1266370 2753240 TRUE FALSE FALSE 2066924.851 1498790.024 1323692.385 2421667.231 1375299.68 1506177.513 1735134.02 1314364.204 1520518.843 2066907.938 1.000008183 0.725136324 0.64042155 1.171637685 0.665389907 0.728710498 0.839482973 0.635908441 0.735649041 1 20.9790427 S(ph)VEYEGDLK ddPTM_HeLa_A486_30min_R1 6 SVEYEGDLK 9 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(1)VEYEGDLK;S(1)VEYEGDLK;S(1)VEYEGDLK;S(1)VEYEGDLK;S(1)VEYEGDLK;S(1)VEYEGDLK ;;;;; 158.94 2.00E-05 1983750000 5187310 5037590 2178380 2021500 3529420 5131650 6170200 5226060 3618200 7829000 TRUE FALSE FALSE 4823706.356 4638393.022 3021907.075 4706154.161 3086727.233 4498559.198 4626350.698 4036200.222 3931828.489 5868567.442 0.821956364 0.790379095 0.514930961 0.801925548 0.525976273 0.766551504 0.788327091 0.687765841 0.669980967 1 22.48457694 -10.68718542 2.692671351 1.042340615 0.705271683 0.409852686 0.10525317 49565794.02 42824337.96 14327953.32 0.025369025 2.06E-11 10.68718542 -0.337068932 S(ph)VGGSGGGSFGDNLVTR ddPTM_HeLa_A485_30min_R1 2 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.521)VGGS(0.311)GGGS(0.168)FGDNLVTR;S(0.848)VGGS(0.146)GGGS(0.007)FGDNLVTR ; 295.65 2.06E-68 3934800000 1692820 2225600 2238800 2009860 2598200 2410400 3110000 3120600 1822810 2734800 TRUE FALSE FALSE 2069381.969 2485864.56 3067025.284 2119653.563 2339514.085 2536604.817 2445523.094 2355267.957 2188631.247 2053064.69 1.007947766 1.210806738 1.493876593 1.032433889 1.13952283 1.235521135 1.191157349 1.147196174 1.066031313 1 20.96934766 -7.814516477 1.758931891 1.000986821 1.194345826 0.199523708 0.124797822 0.54869441 3.464814719 0.120195732 0.035272523 1.53E-08 7.814516477 0.193359005 S(ph)VHREESCSDSGTK ddPTM_HeLa_A485_30min_R1 3 SVHREESCSDSGTK 14 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.999)VHREES(0.001)CSDSGTK;S(0.999)VHREES(0.001)CSDSGTK;S(1)VHREESCSDSGTK ;; 212.34 8.54E-23 3372560000 1252810 1339560 984652 1422560 1559150 1553040 1876680 2119520 1324060 1847140 TRUE FALSE FALSE 1531493.262 1496209.889 1348915.75 1500270.851 1403915.551 1634354.773 1475711.987 1599704.397 1589786.697 1386681.992 1.10443005 1.078985591 0.97276503 1.081914137 1.01242791 1.178608205 1.064203614 1.153620229 1.14646812 1 20.40320554 -6.246687237 24.89876087 1.115407776 1.049179608 0.193850991 0.058789871 1139.120128 1922615.42 0.018622321 0.018550812 5.67E-07 6.246687237 -0.066228168 S(ph)VHREESCSDSGTK ddPTM_HeLa_A486_30min_R1 4 SVHREESCSDSGTK 14 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(1)VHREESCSDSGTK;S(1)VHREESCSDSGTK;S(1)VHREESCSDSGTK;S(1)VHREESCSDSGTK ;;; 249.41 3.31E-36 2928940000 1947360 1672790 1303280 636089 1749160 1936950 2369360 2067510 1597720 2061420 TRUE FALSE FALSE 1810860.12 1540232.028 1807944.919 1480847.338 1529764.043 1697988.802 1776521.067 1596783.106 1736211.656 1545227.014 1.171905554 0.996767474 1.17001897 0.958336428 0.989993074 1.098860418 1.149682895 1.033364736 1.123596494 1 20.55938737 S(ph)VHS(ph)EHS(ph)AR ddPTM_HeLa_A485_30min_R1 2 SVHSEHSAR 9 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 3 0 S(1)VHS(1)EHS(1)AR;S(1)VHS(1)EHS(1)AR ; 127.78 0.00011018 631620000 894010 848130 493110 1187490 445880 942750 782160 948510 779310 936020 TRUE FALSE FALSE 1092879.44 947311.4257 675531.909 1252359.572 401486.6216 992110.9322 615045.1263 715886.4353 935710.3687 702687.4402 1.555285291 1.34812631 0.961354751 1.782242716 0.571358756 1.411880838 0.875275537 1.018783593 1.331616755 1 19.42252359 -1 0.475972849 1.074309749 13.98696963 0.167687456 0.313089493 170.0155912 1.929516449 0.172056629 2166.630922 0.1 1 12.91265988 S(ph)VHS(ph)EHS(ph)AR ddPTM_HeLa_A486_30min_R1 2 SVHSEHSAR 9 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 3 0 S(1)VHS(1)EHS(1)AR;S(1)VHS(1)EHS(1)AR ; 118.24 0.00044615 605610000 1373480 717370 755120 384460 603610 1178700 802220 603390 1329880 1512640 TRUE FALSE FALSE 1277206.145 660522.9886 1047522.687 895042.3095 527899.6054 1033283.978 601496.071 466011.2689 1445155.069 1133865.098 1.126418078 0.582541071 0.923851249 0.789372837 0.465575319 0.911293574 0.530482922 0.410993574 1.274538806 1 20.11281758 -7.775831898 24.99997765 1.137269545 0.714156737 0.359994567 0.22380732 284.246059 493724.1507 0.205364348 0.054013023 1.68E-08 7.775831898 -0.423112808 S(ph)VILDGR ddPTM_HeLa_A486_30min_R1 1 SVILDGR 7 0 Q2M1Z3 Q2M1Z3 ARHGAP31 Rho GTPase-activating protein 31 1 0 S(1)VILDGR 83.647 0.0096532 31921000 94819 88199 68868 28216 86673 61971 72338 71123 65360 62960 TRUE FALSE FALSE 88172.67775 81209.79002 95535.53395 65688.27396 75801.66415 54325.64809 54238.26729 54929.8455 71025.45743 47194.4062 1.868286622 1.72075033 2.024297828 1.391865673 1.606157811 1.151103541 1.149252033 1.163905851 1.504954997 1 15.52632825 -5.723581916 1.246387923 1.202862339 1.858686471 0.70627876 0.177475442 0.24607593 0.802823205 0.068664223 0.103044156 1.89E-06 5.723581916 0.655824132 S(ph)VNDLLDETSTFKPGHAR ddPTM_HeLa_A485_30min_R1 3 SVNDLLDETSTFKPGHAR 18 1 C9J119;Q6ZWE6-3;Q6ZWE6-2;Q6ZWE6 C9J119 PLEKHM3 Pleckstrin homology domain-containing family M member 3 1 0 S(1)VNDLLDETSTFKPGHAR;S(1)VNDLLDETSTFKPGHAR;S(1)VNDLLDETSTFKPGHAR ;; 160.97 3.43E-12 594207000 499870 535968 417014 663356 639888 575086 787215 808795 481324 829804 TRUE FALSE FALSE 611064.357 598644.7953 571284.832 699593.4586 576178.5039 605196.6137 619020.0843 610436.7581 577921.3118 622949.1342 0.980921753 0.960985035 0.917064975 1.123034643 0.924920627 0.971502456 0.993692824 0.979914289 0.9277183 1 19.24875484 S(ph)VNDLLDETSTFKPGHAR ddPTM_HeLa_A486_30min_R1 2 SVNDLLDETSTFKPGHAR 18 1 C9J119;Q6ZWE6-3;Q6ZWE6-2;Q6ZWE6 C9J119 PLEKHM3 Pleckstrin homology domain-containing family M member 3 1 0 S(1)VNDLLDETSTFKPGHAR;S(1)VNDLLDETSTFKPGHAR ; 146.76 2.64E-08 536920000 862090 825550 507430 292840 885350 829750 1069750 996940 685900 1056910 TRUE FALSE FALSE 801661.9428 760130.4114 703920.4854 681746.3193 774301.1474 727383.8813 802087.2353 769958.525 745354.3643 792252.8567 1.011876368 0.959454302 0.888504825 0.860516076 0.977340935 0.918120869 1.012413182 0.971859576 0.940803631 1 19.59560143 -6.746664728 24.97082159 0.978924069 0.933329827 0.20036951 0.044045721 412.2151303 696690.4473 0.017909788 0.013813687 1.79E-07 6.746664728 -0.045594242 S(ph)VNFS(ph)LTPNEIK ddPTM_HeLa_A485_30min_R1 2 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)VNFS(0.556)LT(0.444)PNEIK;S(1)VNFS(0.744)LT(0.256)PNEIK ; 144.97 4.13E-07 142177000 576280 429240 304050 689610 676250 433990 677210 631920 374620 863750 TRUE FALSE FALSE 704471.4979 479435.8841 416530.7476 727281.6481 608920.1755 456713.0453 532518.5512 476940.6292 449802.7978 648433.0211 1.08642138 0.739376109 0.642365108 1.121598722 0.939064106 0.704333417 0.821239101 0.735527978 0.693676576 1 19.30659804 -6.253318397 24.81491032 0.776318643 0.893878678 0.113364276 0.156149807 1300.55932 3974062.825 0.052950466 0.052064527 5.58E-07 6.253318397 0.117560036 S(ph)VNFS(ph)LTPNEIK ddPTM_HeLa_A486_30min_R1 2 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)VNFS(0.807)LT(0.193)PNEIK;S(1)VNFS(0.943)LT(0.057)PNEIK ; 131.18 5.62E-05 162159000 782920 777540 407570 427200 738220 830970 1021100 946960 574140 1020090 TRUE FALSE FALSE 728041.351 715924.8986 565392.0191 994543.1895 645625.564 728453.3701 765609.9799 731357.88 623906.9175 764652.8243 0.952120136 0.936274445 0.739410097 1.300646722 0.844338167 0.952658967 1.001251752 0.956457436 0.815934889 1 19.54444534 S(ph)VNFSLT(ph)PNEIK ddPTM_HeLa_A485_30min_R1 1 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)VNFS(0.082)LT(0.918)PNEIK 182.79 1.83E-12 125230000 353150 282690 179710 443360 378610 296760 403210 393290 211550 495290 TRUE FALSE FALSE 431706.9991 315748.1364 246192.2074 467579.6342 340914.259 312297.8947 317060.8896 296835.0108 254006.1445 371823.3181 1.16105413 0.849188636 0.662121484 1.257531767 0.916871649 0.839909386 0.852719219 0.798322742 0.683136673 1 18.50425772 -6.209099474 4.267900632 0.822421283 0.96399386 0.139011043 0.168202979 0.479792042 18.63818892 0.058514938 0.05726839 6.18E-07 6.209099474 0.141572577 S(ph)VNFSLT(ph)PNEIK ddPTM_HeLa_A486_30min_R1 2 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)VNFS(0.014)LT(0.986)PNEIK;S(1)VNFS(0.002)LT(0.998)PNEIK ; 204.78 1.38E-21 132320000 453680 442350 226196 234510 381420 480390 585690 555470 303470 566480 TRUE FALSE FALSE 421879.3748 407296.575 313785.1489 545951.1315 333578.747 421124.366 439144.1672 429001.6068 329775.0239 424629.7208 0.993522954 0.959180564 0.738961814 1.285711067 0.785575598 0.991744914 1.034181419 1.010295761 0.776617857 1 18.69584583 -4.270212262 7.937831874 0.956014171 0.993775868 0.006001573 0.151433158 1.006397143 653.1956864 0.035673518 0.178296741 5.37E-05 4.270212262 0.037761697 S(ph)VPGLNVDMEEEEEEEDIDHLVK ddPTM_HeLa_A485_30min_R1 3 SVPGLNVDMEEEEEEEDIDHLVK 23 0 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 S(1)VPGLNVDMEEEEEEEDIDHLVK;S(1)VPGLNVDMEEEEEEEDIDHLVK;S(1)VPGLNVDMEEEEEEEDIDHLVK ;; 226.28 2.19E-38 119331000 40214 28811.1 26244.3 44371 45852 37078.1 52516 50196.4 27561 61133 TRUE FALSE FALSE 49159.46556 32180.30752 35953.15869 46794.87538 41286.81388 39019.45198 41295.52758 37885.6542 33092.2399 45893.66817 1.071160086 0.701192753 0.783401287 1.019636853 0.899618957 0.850214279 0.899808824 0.825509394 0.721063302 1 15.4860075 -9.532118934 7.781640855 0.999999767 0.861594104 0.118206322 0.111725059 0 0 0.106577441 0.025848826 2.94E-10 9.532118934 -0.138405662 S(ph)VPGLNVDMEEEEEEEDIDHLVK ddPTM_HeLa_A486_30min_R1 3 SVPGLNVDMEEEEEEEDIDHLVK 23 0 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 S(1)VPGLNVDMEEEEEEEDIDHLVK;S(1)VPGLNVDMEEEEEEEDIDHLVK;S(1)VPGLNVDMEEEEEEEDIDHLVK ;; 159.65 2.82E-11 175370000 48261 57547 31290.1 31266.7 49790 53675 68900 60017 42331 60494 TRUE FALSE FALSE 44878.15312 52986.76614 43406.4647 72790.45773 43544.87393 47053.12423 51660.49125 46352.43926 46000.28516 45345.90865 0.989684725 1.168501585 0.957230012 1.605226577 0.96028231 1.037648724 1.139253635 1.022196724 1.014430773 1 15.46868477 S(ph)VPGPLK ddPTM_HeLa_A485_30min_R1 1 SVPGPLK 7 0 F5H5B4;Q13043-2;Q13043 F5H5B4 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit 1 0 S(1)VPGPLK 67.993 0.022835 326310000 441420 397660 257980 380750 435140 419340 565930 554840 294440 492900 TRUE FALSE FALSE 539612.3561 444162.8778 353417.5374 401549.4084 391815.9337 441295.994 445014.4323 418764.62 353531.4072 370029.1012 1.458297076 1.200345801 0.955107413 1.08518332 1.0588787 1.192598076 1.202647119 1.13170726 0.955415145 1 18.49727921 -4.350977076 3.302307794 1.085824074 1.477039212 0.655886425 0.08431774 0.17344939 3.066227432 0.022479802 0.148524761 4.46E-05 4.350977076 0.391215139 S(ph)VPGPLK ddPTM_HeLa_A486_30min_R1 2 SVPGPLK 7 0 F5H5B4;Q13043-2;Q13043 F5H5B4 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit 1 0 S(1)VPGPLK;S(1)VPGPLK ; 78.516 0.013974 377080000 749380 868220 539350 334000 800760 868130 1006710 967260 634850 884230 TRUE FALSE FALSE 696852.3318 799419.0852 748200.7643 777568.8794 700321.214 761028.9471 754820.5101 747036.0131 689879.3092 662813.0526 1.051355777 1.206100396 1.128826237 1.173134531 1.056589352 1.148180387 1.138813587 1.127068953 1.040835431 1 19.33824249 -7.86454376 3.033585443 1.001096638 1.132068126 0.496859219 0.044436723 0.182331464 3.197855598 0.040047568 0.010876338 1.37E-08 7.86454376 0.130971488 S(ph)VPHLQK ddPTM_HeLa_A485_30min_R1 1 SVPHLQK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(1)VPHLQK 104.2 0.0026297 58607000 66216 109120 64545 116310 97188 143270 141100 178270 99245 178330 TRUE FALSE FALSE 80945.52076 121880.6348 88422.88144 122663.7208 87511.62147 150771.3957 110952.8323 134549.003 119162.5612 133875.6129 0.604632307 0.910402067 0.660485353 0.916251423 0.653678587 1.126205082 0.828775532 1.005029968 0.89009909 1 17.03053365 -6.251403035 24.99779035 0.961508411 0.762416006 0.452908686 0.120786031 674.9144347 1681028.22 0.036840594 0.036419994 5.61E-07 6.251403035 -0.199092405 S(ph)VPHLQK ddPTM_HeLa_A486_30min_R1 1 SVPHLQK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(1)VPHLQK 128.36 0.0012483 67424000 138940 118140 81758 79242 138050 143640 128350 150440 153020 184730 TRUE FALSE FALSE 129201.0235 108778.1561 113416.8872 184479.3807 120734.4817 125919.1572 96235.47245 116188.0961 166283.8968 138472.4056 0.933045273 0.785558362 0.819057679 1.332246521 0.871902826 0.909344766 0.694979422 0.839070395 1.200845006 1 17.07923898 -7.754352082 24.99988556 1.100422522 0.898956836 0.192631292 0.165634383 256.1909456 903716.9419 0.122629363 0.044156028 1.76E-08 7.754352082 -0.201465686 S(ph)VPNT(ph)PLRPNQQSVVNSSFSELFVK ddPTM_HeLa_A485_30min_R1 2 SVPNTPLRPNQQSVVNSSFSELFVK 25 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 2 0 S(1)VPNT(1)PLRPNQQSVVNSSFSELFVK;S(0.999)VPNT(0.997)PLRPNQQS(0.004)VVNSSFSELFVK ; 122.11 2.62E-05 554580000 194762 212578 180135 265180 334190 298920 394600 433020 219750 333290 TRUE FALSE FALSE 238086.135 237437.1479 246774.4325 279666.1119 300916.8702 314570.989 310290.4864 326821.1661 263851.8093 250206.9367 0.951556892 0.94896309 0.986281339 1.117739242 1.202671973 1.257243277 1.240135427 1.306203458 1.05453435 1 17.93276226 -5.354977395 2.18884689 1.199283078 0.950677793 0.536669006 0.088005714 0.214080792 2.004586203 0.026118701 0.04589106 4.42E-06 5.354977395 -0.248605284 S(ph)VPNT(ph)PLRPNQQSVVNSSFSELFVK ddPTM_HeLa_A486_30min_R1 1 SVPNTPLRPNQQSVVNSSFSELFVK 25 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 2 0 S(1)VPNT(0.999)PLRPNQQS(0.001)VVNSSFSELFVK 111.04 0.00028235 183340000 56514 74548 58493 34463 93747 89072 106620 105890 74421 95320 TRUE FALSE FALSE 52552.66044 68640.54498 81143.0561 80231.60566 81988.3771 78083.20226 79942.54829 81781.15856 80871.8722 71451.25157 0.735503708 0.960662598 1.135642194 1.122885938 1.147472932 1.092817838 1.11884042 1.144572793 1.131846825 1 16.12467166 -4.397588055 2.233700191 1.118742069 0.692730279 0.883060946 0.042289964 0.1271307 0.911228517 0.010494865 0.095097917 4.00E-05 4.397588055 -0.42601179 S(ph)VPNTPLRPNQQSVVNSSFSELFVK ddPTM_HeLa_A485_30min_R1 1 SVPNTPLRPNQQSVVNSSFSELFVK 25 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 S(0.911)VPNT(0.089)PLRPNQQS(0.001)VVNSSFSELFVK 114.61 0.00011192 1019100000 10301 7281.9 9523.1 15165 11140 17425 15829 17490 11646 18819 TRUE FALSE FALSE 12592.42191 8133.454861 13046.09098 15993.42555 10030.86249 18337.34606 12447.00484 13200.55008 13983.24538 14127.76964 0.891324125 0.575706928 0.923435993 1.132055941 0.710010337 1.297964684 0.881031129 0.934369006 0.9897702 1 13.7862461 -4.944521956 8.433143333 0.98899515 0.735660281 0.287162432 0.160737147 0.31754322 43.3755715 0.039447085 0.082446064 1.14E-05 4.944521956 -0.253334869 S(ph)VQEGENPDDGVR ddPTM_HeLa_A485_30min_R1 2 SVQEGENPDDGVR 13 0 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 0 S(1)VQEGENPDDGVR;S(1)VQEGENPDDGVR ; 152.94 4.41E-08 822050000 182574 195991 192546 186549 251110 164667 177397 196547 162231 244710 TRUE FALSE FALSE 223186.9564 218910.4426 263776.7779 196739.6995 226108.6067 173288.7095 139494.6817 148343.5401 194789.2736 183708.3006 1.214898596 1.191619768 1.435845725 1.070935276 1.230802343 0.943281871 0.759327049 0.807495032 1.060318304 1 17.48705729 -6.304046607 3.911194599 0.88601853 1.231882877 0.644726056 0.116488242 0.139900434 4.607815162 0.042234898 0.038060062 4.97E-07 6.304046607 0.345864347 S(ph)VQEGENPDDGVR ddPTM_HeLa_A486_30min_R1 4 SVQEGENPDDGVR 13 0 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 0 S(1)VQEGENPDDGVR;S(1)VQEGENPDDGVR;S(1)VQEGENPDDGVR;S(1)VQEGENPDDGVR ;;; 207.55 1.00E-21 869180000 403548 496360 440837 130078 572020 461751 476066 507560 411035 485980 TRUE FALSE FALSE 375261.3691 457026.6259 611540.8924 302828.1578 500271.9177 404784.8564 356949.2515 391999.668 446663.8447 364287.4448 1.030124355 1.254576935 1.67873173 0.831289033 1.373288937 1.111168837 0.979856036 1.076072408 1.22613022 1 18.47471775 -6.053899679 1.158198092 1.077094465 1.262423949 0.094865757 0.21697873 1.140661257 3.211829881 0.10247809 0.112150691 8.83E-07 6.053899679 0.185329484 S(ph)VQSAAVPAPTSQLLSSLEKDEPR ddPTM_HeLa_A485_30min_R1 1 SVQSAAVPAPTSQLLSSLEKDEPR 24 1 Q96T58;A0A669KB49;F6WRY4;H0Y5U7 Q96T58 SPEN Msx2-interacting protein 1 0 S(1)VQSAAVPAPTSQLLSSLEKDEPR 154.26 6.44E-10 147220000 74592 64274 60303 130640 102560 79119 118590 91540 88641 174060 TRUE FALSE FALSE 91184.73306 71790.28519 82611.58912 137776.5324 92348.76629 83261.5485 93252.27771 69089.67147 106430.4356 130670.0453 0.697824301 0.549401242 0.632215202 1.054384974 0.706732488 0.637189252 0.713646938 0.528733814 0.814497579 1 16.99556893 -8.007680086 24.2386534 1.000000016 0.693662051 0.332759238 0.136266643 248.6695061 784814.4715 0.137590408 0.035525691 9.82E-09 8.007680086 -0.306337965 S(ph)VQSAAVPAPTSQLLSSLEKDEPR ddPTM_HeLa_A486_30min_R1 2 SVQSAAVPAPTSQLLSSLEKDEPR 24 1 Q96T58;A0A669KB49;F6WRY4;H0Y5U7 Q96T58 SPEN Msx2-interacting protein 1 0 S(1)VQSAAVPAPTSQLLSSLEKDEPR;S(0.983)VQS(0.017)AAVPAPTSQLLSSLEKDEPR ; 144.43 1.76E-09 382110000 263950 275310 138647 98986 240120 272650 290360 268750 229830 340160 TRUE FALSE FALSE 245448.468 253493.4329 192334.8315 230444.4105 210001.9106 239013.2151 217708.8569 207561.4918 249751.8495 254981.7219 0.962612011 0.994163154 0.754308309 0.903768351 0.823595938 0.937373916 0.853821424 0.814024983 0.979489226 1 17.96003431 -7.892951141 6.954822346 0.999037203 0.88013198 0.287456891 0.069120556 0.268245014 14.52052995 0.066934849 0.017342147 1.28E-08 7.892951141 -0.118905223 S(ph)VRPGASYK ddPTM_HeLa_A485_30min_R1 2 SVRPGASYK 9 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8 B7Z8L1 PPHLN1 Periphilin-1 1 0 S(1)VRPGASYK;S(1)VRPGASYK ; 87.001 0.0019683 619420000 733750 547430 487440 745360 726590 726240 898140 865490 549570 947310 TRUE FALSE FALSE 896970.1561 611447.1765 667764.3401 786077.1294 654248.1484 764264.8034 706245.0519 653227.2205 659863.658 711163.0509 1.261272158 0.859784793 0.93897502 1.105340229 0.919969264 1.074668886 0.993084569 0.918533689 0.927865497 1 19.43982084 -7.079665981 5.749403761 0.943635426 1.015363271 0.089272175 0.107382215 0.612457679 33.92906329 0.049324055 0.028348665 8.32E-08 7.079665981 0.071727844 S(ph)VRPGASYK ddPTM_HeLa_A486_30min_R1 2 SVRPGASYK 9 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8 B7Z8L1 PPHLN1 Periphilin-1 1 0 S(1)VRPGASYK;S(0.998)VRPGAS(0.001)Y(0.001)K ; 62.528 0.012909 569290000 487840 556230 347640 162851 510880 611150 570210 566390 457320 587130 TRUE FALSE FALSE 453644.9352 512152.309 482255.5181 379125.358 446800.6666 535752.5267 427537.4269 437435.3612 496960.8658 440108.8264 1.030756277 1.163694701 1.09576425 0.86143548 1.015204967 1.217318296 0.971435702 0.993925445 1.129177231 1 18.74750078 S(ph)VS(ph)GS(ph)PEPAAK ddPTM_HeLa_A485_30min_R1 2 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)VS(1)GS(1)PEPAAK;S(1)VS(1)GS(1)PEPAAK ; 131.66 3.10E-05 2831900000 2763100 2687300 1925520 4571900 3481200 3224900 4961400 4798000 2475300 5846000 TRUE FALSE FALSE 3377742.062 3001556.359 2637849.976 4821651.32 3134599.505 3393750.777 3901356.359 3621282.977 2972070.005 4388699.788 0.769645277 0.683928385 0.601055006 1.098651435 0.71424332 0.773292989 0.888954941 0.825138003 0.677209686 1 22.06536215 -14 0.187306548 1.854075046 0.746964992 0.185943345 0.132219777 245.0055515 2.386663423 78.92496731 0.378554047 1.00E-14 14 -1.107110055 S(ph)VS(ph)GS(ph)PEPAAK ddPTM_HeLa_A486_30min_R1 2 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 S(1)VS(1)GS(1)PEPAAK;S(1)VS(1)GS(1)PEPAAK ; 118.51 0.00019498 3184700000 3336100 3165800 1589600 1811570 2670900 3522200 4199400 3934800 2508100 5047500 TRUE FALSE FALSE 3102256.618 2914930.478 2205135.691 4217426.512 2335890.817 3087666.775 3148665.703 3038931.936 2725504.127 3783573.146 0.81992775 0.770417372 0.582818306 1.11466763 0.617376941 0.816071649 0.832193691 0.80319101 0.720351906 1 21.85131791 -10.42614226 2.990788287 1.004079455 0.787287804 0.180280715 0.136668717 37338482.71 44864613.62 1293264.507 0.032813806 3.75E-11 10.42614226 -0.216791651 S(ph)VS(ph)PCSNVESR ddPTM_HeLa_A485_30min_R1 6 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)VS(0.971)PCS(0.029)NVESR;S(1)VS(0.998)PCS(0.002)NVESR;S(1)VS(1)PCSNVESR;S(1)VS(0.999)PCS(0.001)NVESR;S(1)VS(1)PCSNVESR;S(1)VS(1)PCSNVESR ;;;;; 219.26 1.70E-17 26210590000 7553030 8636780 8531220 8738790 11529370 8432390 11015320 11109320 8205670 11581170 TRUE FALSE FALSE 9233175.466 9646776.291 11687273.29 9216167.97 10381465.44 8873896.901 8661806.895 8384741.851 9852472.702 8694197.455 1.061992842 1.109564896 1.344261314 1.060036653 1.194068285 1.020668894 0.996274462 0.964406651 1.133223941 1 23.05162143 -6.272092496 23.61411865 1.019025163 1.156868601 0.366537807 0.086036109 370.2414023 820688.0614 0.030036642 0.026788108 5.34E-07 6.272092496 0.137843438 S(ph)VS(ph)PCSNVESR ddPTM_HeLa_A486_30min_R1 6 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)VS(1)PCSNVESR;S(1)VS(0.986)PCS(0.014)NVESR;S(1)VS(0.979)PCS(0.021)NVESR;S(1)VS(0.5)PCS(0.5)NVESR;S(1)VS(0.997)PCS(0.003)NVESR;S(1)VS(0.863)PCS(0.137)NVESR ;;;;; 207.04 1.39E-14 23333960000 17673530 21016700 15088740 7072270 20372080 18908580 22160520 21391080 17027000 21301590 TRUE FALSE FALSE 16434706.81 19351260.15 20931504.22 16464601.97 17816823.76 16575831.65 16615723.51 16520798.05 18502914.07 15967533.21 1.029257719 1.211912942 1.310879015 1.031129966 1.11581567 1.038095955 1.040594266 1.034649362 1.158783503 1 23.92863812 -5.295003016 24.99709957 1.061931716 1.186806275 0.35125785 0.077253961 666.5780924 496444.0847 0.021667244 0.032139774 5.07E-06 5.295003016 0.124874559 S(ph)VS(ph)PLRPETEARPPSR ddPTM_HeLa_A486_30min_R1 1 SVSPLRPETEARPPSR 16 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 2 0 S(1)VS(1)PLRPETEARPPSR 87.652 0.00076552 652500000 152440 162270 101430 45814 119700 135070 135380 119570 114080 156680 TRUE FALSE FALSE 141754.7432 149411.1342 140706.4124 106657.3073 104686.1098 118406.4367 101506.4921 92346.52119 123968.5463 117446.3082 1.206974876 1.272165439 1.198048832 0.908136739 0.891352921 1.008175042 0.864279973 0.786287135 1.055533785 1 16.84164184 -5.223429418 4.772750195 0.919818698 1.236431113 0.761444289 0.075662266 0.09005707 5.055610218 0.020622953 0.03565782 5.98E-06 5.223429418 0.316612415 S(ph)VS(ph)PPPK ddPTM_HeLa_A485_30min_R1 2 SVSPPPK 7 0 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)VS(1)PPPK;S(1)VS(1)PPPK ; 89.247 0.01456 1196990000 2986460 2722660 1861740 4199230 3571750 3078430 4820760 4650350 2582260 5844340 TRUE FALSE FALSE 3650787.724 3041051.403 2550475.099 4428623.302 3216134.029 3239611.835 3790765.244 3509844.371 3100495.896 4387453.595 0.832097171 0.69312446 0.581311014 1.009383508 0.733029754 0.738380877 0.864001217 0.79997299 0.706673206 1 22.06495244 -11.3746399 2.212278019 2.528574244 0.773327247 0.280745066 0.108949004 4483326.049 590398.7236 34203579.65 0.028049516 4.22E-12 11.3746399 -1.755246996 S(ph)VS(ph)PPPK ddPTM_HeLa_A486_30min_R1 1 SVSPPPK 7 0 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)VS(1)PPPK 107.15 0.0068544 1327800000 2799100 2826800 1558500 1161300 2727500 3117500 3367800 3358400 2403000 3707500 TRUE FALSE FALSE 2602897.545 2602794.073 2161992.938 2703565.089 2385391.517 2732894.546 2525140.819 2593765.633 2611293.975 2779117.868 0.936591274 0.936554042 0.777942153 0.972814115 0.858326861 0.983367628 0.908612351 0.933305371 0.939612531 1 21.40619559 -6.261912488 24.99990808 0.946038209 0.896333092 0.20282007 0.055188905 82.5927146 4364190.254 0.018330785 0.017214831 5.47E-07 6.261912488 -0.049705117 S(ph)VS(ph)PPPKR ddPTM_HeLa_A485_30min_R1 12 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR ;;;;;;;;;;; 90.827 0.0016941 77698410000 8840850 8554750 6382060 11765890 11075980 10052610 13805350 14151640 8155390 15098230 TRUE FALSE FALSE 10807466.58 9555153.596 8743049.574 12408630.78 9973216.541 10578949.12 10855724.19 10680928.1 9792101.967 11334519.12 0.953500229 0.843013585 0.771364844 1.094764643 0.879897632 0.933339033 0.957757808 0.942336237 0.863918607 1 23.43421985 -5.231503762 24.99974445 0.94705725 0.854664985 0.268889055 0.072945827 984.4565611 822135.3852 0.019298769 0.03342059 5.87E-06 5.231503762 -0.092392266 S(ph)VS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 8 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR;S(1)VS(1)PPPKR ;;;;;;; 97.734 0.0011669 54845320000 11819030 11570540 6282710 4933080 11073660 13056630 14794460 13908520 9578920 15979930 TRUE FALSE FALSE 10990577.03 10653648.27 8715543.569 11484459.54 9684698.305 11445835.74 11092729.63 10741853.62 10409228.5 11978451.52 0.917529033 0.889401126 0.727601857 0.958759947 0.808510039 0.955535507 0.926057063 0.896764795 0.868996171 1 23.51393808 -6.272221919 24.93527274 0.922805152 0.86006494 0.207617876 0.066874674 1274.941541 2948372.118 0.022949079 0.020449839 5.34E-07 6.272221919 -0.062740213 S(ph)VS(ph)PYSR ddPTM_HeLa_A485_30min_R1 2 SVSPYSR 7 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(1)VS(0.986)PY(0.014)SR;S(1)VS(0.753)PY(0.237)S(0.01)R ; 96.342 0.011209 1265260000 1322450 1659350 1564970 1299240 1936620 1521210 1853620 1916450 1529630 1787470 TRUE FALSE FALSE 1616624.44 1853396.548 2143917.527 1370214.191 1743803.313 1600858.203 1457578.944 1446437.633 1836612.71 1341886.625 1.204739961 1.381187139 1.59768902 1.021110253 1.299516129 1.192990655 1.086216166 1.077913443 1.368679497 1 20.35583135 -5.271696826 24.99544887 1.158163122 1.393203559 0.387595649 0.140855773 717.9583333 1749526.811 0.039009694 0.058598926 5.35E-06 5.271696826 0.235040437 S(ph)VS(ph)PYSR ddPTM_HeLa_A486_30min_R1 2 SVSPYSR 7 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(1)VS(0.911)PY(0.089)SR;S(1)VS(0.605)PY(0.393)S(0.003)R ; 119.22 0.0044685 3282700000 5525000 5943600 4508900 2081960 6155600 5515000 6420400 5992300 4924700 6213000 TRUE FALSE FALSE 5137726.031 5472607.49 6254866.833 4846908.096 5383507.249 4834615.372 4813948.012 4627984.101 5351576.961 4657224.36 1.1031734 1.175079203 1.343046061 1.040728924 1.155947584 1.038089428 1.033651729 0.993721527 1.149091508 1 22.15103895 -5.764978473 1.539215438 1.045186727 1.194955133 0.362998262 0.081077691 0.411708989 2.027413429 0.029769541 0.040463786 1.72E-06 5.764978473 0.149768406 S(ph)VS(ph)RS(ph)PVPEK ddPTM_HeLa_A485_30min_R1 1 SVSRSPVPEK 10 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 3 0 S(1)VS(1)RS(1)PVPEK 101.3 0.014394 5755300000 1858800 1800000 1115400 2092000 1329900 1742300 2384900 1838800 1223800 2149800 TRUE FALSE FALSE 2272283.647 2010494.342 1528032.876 2206280.663 1197490.486 1833524.134 1875346.632 1387831.417 1469405.435 1613894.424 1.407950615 1.245740931 0.946798535 1.367053898 0.741988118 1.136086789 1.162000813 0.859927016 0.910471845 1 20.62211477 -1 0.458344104 0.976646995 11.430032 0.380646152 0.165606734 95.23533314 1.128155976 0.098735347 936.3360796 0.1 1 10.45338501 S(ph)VS(ph)RS(ph)PVPEK ddPTM_HeLa_A486_30min_R1 4 SVSRSPVPEK 10 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 3 0 S(1)VS(1)RS(1)PVPEK;S(1)VS(1)RS(1)PVPEK;S(1)VS(1)RS(1)PVPEK;S(1)VS(1)RS(1)PVPEK ;;; 139.3 0.00019974 10195480000 18774830 16508190 6127340 5657030 7915380 13842330 14927840 11738640 11597760 24213780 TRUE FALSE FALSE 17458811.37 15200020.9 8500010.144 13169851.73 6922559.232 12134604.06 11192736.54 9066007.925 12603063.17 18150491.88 0.961891914 0.837444021 0.468307427 0.725592001 0.381397886 0.668555108 0.616662987 0.499491032 0.694364828 1 24.11350531 -9.704716668 11.15665519 0.999999996 0.639958002 0.287351363 0.16442145 0 0 0.162364163 0.039379094 1.97E-10 9.704716668 -0.360041994 S(ph)VSEINS(ph)DDELSGK ddPTM_HeLa_A486_30min_R1 1 SVSEINSDDELSGK 14 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 2 0 S(1)VSEINS(1)DDELSGK 178.71 5.63E-11 0 205340 215530 127350 85233 199730 232270 243670 242170 186780 256890 TRUE FALSE FALSE 190946.7264 198450.6179 176663.3306 198426.7314 174678.001 203614.8889 182701.1887 187033.1775 202970.2408 192563.0719 0.99160615 1.030574636 0.917430994 1.030450592 0.907120972 1.057393232 0.948786218 0.971282685 1.054045507 1 17.55497154 -7.748176037 24.99683116 1.027022763 0.981856433 0.124696173 0.047893269 397.0091083 748234.1757 0.030248231 0.011288065 1.79E-08 7.748176037 -0.04516633 S(ph)VSGFLHFDTATK ddPTM_HeLa_A485_30min_R1 4 SVSGFLHFDTATK 13 0 Q92621 Q92621 NUP205 Nuclear pore complex protein Nup205 1 0 S(1)VSGFLHFDTATK;S(0.999)VS(0.001)GFLHFDTATK;S(1)VSGFLHFDTATK;S(0.999)VS(0.001)GFLHFDTATK ;;; 281.93 5.88E-49 1207890000 2647830 2393360 1666460 2055400 2137360 1678020 2783650 2686170 1613910 2680370 TRUE FALSE FALSE 3236830.649 2673242.633 2282952.901 2167681.297 1924556.934 1765878.532 2188900.437 2027382.596 1937806.933 2012203.088 1.608600379 1.328515322 1.13455392 1.077267653 0.95644269 0.877584645 1.087812881 1.007543726 0.963027512 1 20.94034449 -4.323975439 1.002474089 0.983875667 1.897049265 0.933256985 0.052943351 0.421006301 0.367648154 0.018718077 0.406143878 4.74E-05 4.323975439 0.913173598 S(ph)VSGFLHFDTATK ddPTM_HeLa_A486_30min_R1 4 SVSGFLHFDTATK 13 0 Q92621 Q92621 NUP205 Nuclear pore complex protein Nup205 1 0 S(0.996)VS(0.004)GFLHFDTATK;S(0.998)VS(0.002)GFLHFDTATK;S(0.998)VS(0.002)GFLHFDTATK;S(0.998)VS(0.002)GFLHFDTATK ;;; 256.26 2.33E-41 1137823000 2126910 2432430 1423570 435515 1580390 2027640 2258840 2086150 1571880 1826380 TRUE FALSE FALSE 1977824.592 2239675.388 1974814.429 1013900.93 1382162.75 1777490.392 1693654.34 1611179.185 1708131.824 1369042.56 1.444677214 1.63594285 1.442478478 0.740591242 1.009583478 1.298345606 1.237108611 1.176865667 1.247683508 1 20.38473587 -5.021344777 24.53019445 1.116750249 1.540035264 0.581227528 0.159098319 422.8009237 485899.428 0.045758795 0.080352819 9.52E-06 5.021344777 0.423285014 S(ph)VSGS(ph)PEPAAK ddPTM_HeLa_A485_30min_R1 5 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(0.999)VS(0.001)GS(1)PEPAAK;S(0.997)VS(0.003)GS(1)PEPAAK;S(0.997)VS(0.003)GS(1)PEPAAK;S(0.96)VS(0.059)GS(0.981)PEPAAK;S(0.626)VS(0.374)GS(1)PEPAAK ;;;; 212.78 7.00E-16 2565220000 4524847 4363174 3227987 5636490 5484490 4839011 7166710 7016520 4053829 7877290 TRUE FALSE FALSE 5531383.605 4873409.245 4422153.719 5944397.176 4938434.918 5092374.133 5635483.862 5295707.469 4867395.296 5913626.574 0.935362342 0.824098239 0.747790491 1.005203339 0.835094143 0.861125414 0.952965797 0.895509279 0.823081274 1 22.49561171 -14 0.260501249 1.792648678 0.865747314 0.205049527 0.071483082 319.7010356 3.144246541 135.8965758 0.095199533 1.00E-14 14 -0.926901365 S(ph)VSGS(ph)PEPAAK ddPTM_HeLa_A486_30min_R1 5 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)VSGS(1)PEPAAK;S(0.998)VS(0.002)GS(1)PEPAAK;S(0.941)VS(0.059)GS(1)PEPAAK;S(0.984)VS(0.016)GS(1)PEPAAK;S(0.735)VS(0.265)GS(1)PEPAAK ;;;; 232.28 1.93E-18 5818800000 8702280 9017120 4896900 3840480 8975320 9570580 11328640 10895940 7051060 11394870 TRUE FALSE FALSE 8092295.111 8302570.571 6793110.824 8940831.527 7849551.674 8389859.146 8494094.45 8415172.319 7662251.558 8541520.384 0.947406872 0.972024909 0.795304643 1.046749422 0.918987642 0.982244234 0.9944476 0.985207778 0.897059448 1 23.02606146 -5.2911826 24.99604815 0.973123971 0.911623293 0.229788695 0.058311525 1098.550897 923213.7027 0.015960548 0.023676662 5.11E-06 5.2911826 -0.061500677 S(ph)VSHGSNHTQKPDEQR ddPTM_HeLa_A485_30min_R1 10 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.5)VS(0.5)HGSNHTQKPDEQR;S(0.497)VS(0.497)HGS(0.007)NHTQKPDEQR;S(0.639)VS(0.311)HGS(0.025)NHT(0.025)QKPDEQR;S(0.58)VS(0.42)HGSNHTQKPDEQR;S(0.499)VS(0.499)HGS(0.001)NHT(0.001)QKPDEQR;S(0.5)VS(0.5)HGSNHTQKPDEQR;S(0.499)VS(0.499)HGS(0.001)NHT(0.001)QKPDEQR;S(0.566)VS(0.433)HGS(0.001)NHTQKPDEQR;S(0.498)VS(0.498)HGS(0.003)NHTQKPDEQR;S(0.566)VS(0.433)HGS(0.001)NHTQKPDEQR ;;;;;;;;; 218.37 6.31E-34 4013345000 778933 1710898 1617531 223269.6 1905182 1120705 1240329 1562991 1577301 584324.7 TRUE FALSE FALSE 952203.9586 1910972.638 2215923.028 235466.2529 1715495.391 1179383.381 975322.5766 1179665.007 1893850.843 438663.306 2.170694347 4.356353978 5.051534965 0.536781285 3.910733739 2.688584536 2.223396768 2.689226545 4.317322231 1 18.7427545 -5.23027347 24.99938416 2.608752254 3.909209967 0.192961519 1.272169368 1174.562532 942160.7926 0.333688875 0.577890563 5.88E-06 5.23027347 1.300457713 S(ph)VSHGSNHTQKPDEQR ddPTM_HeLa_A486_30min_R1 5 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.5)VS(0.5)HGSNHTQKPDEQR;S(0.491)VS(0.491)HGS(0.018)NHTQKPDEQR;S(0.548)VS(0.451)HGS(0.001)NHTQKPDEQR;S(0.555)VS(0.445)HGSNHTQKPDEQR;S(0.571)VS(0.429)HGSNHTQKPDEQR ;;;; 224.89 3.66E-34 1768125000 640033 654095 629425 30672.4 791487 329994 414111 398008 620059 150652 TRUE FALSE FALSE 595169.9918 602262.13 873155.2166 71406.8973 692211.3201 289282.6954 310496.0478 307390.2669 673806.2134 112927.7586 5.270360442 5.333162877 7.731980403 0.632323692 6.129682627 2.561661534 2.749510409 2.72200804 5.966701381 1 16.78504063 -5.24916202 24.99749819 3.268688494 6.033967256 0.36511343 1.805206326 870.9817326 1773372.067 0.466571199 0.800673481 5.63E-06 5.24916202 2.765278762 S(ph)VSKESVASMGADSGDDFASDGSSSR ddPTM_HeLa_A486_30min_R1 1 SVSKESVASMGADSGDDFASDGSSSR 26 1 Q5T165;Q92805 Q5T165 GOLGA1 Golgin subfamily A member 1 1 0 S(0.481)VS(0.418)KES(0.101)VASMGADSGDDFASDGSSSR 92.956 1.06E-07 0 60824 55047 39124 57602 65698 60989 85953 84866 45171 79701 TRUE FALSE FALSE 56560.5517 50684.87524 54273.86058 134100.367 57457.54423 53464.79727 64446.65028 65543.86441 49086.45865 59743.35083 0.946725467 0.848376841 0.908450226 2.244607394 0.961739565 0.894907911 1.07872507 1.09709053 0.821622121 1 15.86649054 S(ph)VSPLLSTHVLGK ddPTM_HeLa_A485_30min_R1 1 SVSPLLSTHVLGK 13 0 Q96H12;X6RL08;X6R907;Q96H12-2 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 0 S(0.567)VS(0.432)PLLSTHVLGK 131.24 1.41E-05 650330000 953430 1301400 1107000 618570 1517800 1223800 1584600 1876000 1129600 1170200 TRUE FALSE FALSE 1165517.214 1453587.409 1516525.366 652360.9128 1366682.503 1287876.276 1246037.265 1415908.059 1356300.359 878490.6759 1.326726903 1.654641818 1.726285102 0.742592871 1.555716572 1.466010182 1.418384166 1.61175081 1.543898411 1 19.74466745 -11.05939544 2.69320105 0.349014709 1.450394177 0.210725657 0.261007567 18336171.29 8508101.441 74612259.42 0.06748396 8.72E-12 11.05939544 1.101379468 S(ph)VSPLLSTHVLGK ddPTM_HeLa_A486_30min_R1 1 SVSPLLSTHVLGK 13 0 Q96H12;X6RL08;X6R907;Q96H12-2 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 0 S(0.596)VS(0.404)PLLSTHVLGK 164.15 5.70E-12 858160000 1313300 1677700 1279600 90955 1747900 1318500 1533100 1474200 1502600 914780 TRUE FALSE FALSE 1221244.452 1544752.942 1775095.389 211747.8366 1528662.083 1155836.876 1149502.165 1138556.842 1632846.578 685713.1338 1.780984484 2.252768491 2.588685124 0.308799447 2.229302617 1.685598275 1.676360139 1.660398183 2.381238593 1 19.38724563 S(ph)VSPLRPET(ph)EARPPSR ddPTM_HeLa_A486_30min_R1 1 SVSPLRPETEARPPSR 16 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 2 0 S(0.946)VS(0.066)PLRPET(0.981)EARPPS(0.007)R 69.133 0.0076196 1626200000 617200 628190 390070 185190 507830 557270 543170 542960 471970 639070 TRUE FALSE FALSE 573937.4672 578409.9366 541115.5504 431131.679 444133.2261 488519.6933 407263.1209 419339.8607 512880.7396 479042.7124 1.198092472 1.207428736 1.129576834 0.899985884 0.927126569 1.019783165 0.850160352 0.875370504 1.070636765 1 18.86979477 -5.121359082 3.792637597 0.941997092 1.197443462 0.73059299 0.064529138 0.115729969 2.929762481 0.017944652 0.033530702 7.56E-06 5.121359082 0.25544637 S(ph)VSPLRPETEARPPSR ddPTM_HeLa_A485_30min_R1 2 SVSPLRPETEARPPSR 16 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.5)VS(0.5)PLRPETEARPPSR;S(0.5)VS(0.5)PLRPETEARPPSR ; 93.849 0.00037925 1576060000 487310 836066 1221952 324349 1567720 728757 669350 825350 907353 502940 TRUE FALSE FALSE 595710.4283 933836.6459 1674002.894 342067.3646 1411632.292 766913.5896 526337.9044 622931.6184 1089450.424 377566.3139 1.57776371 2.473304984 4.433665909 0.905979564 3.738766516 2.031202365 1.394027711 1.649860158 2.885454513 1 18.52637053 -6.507182486 24.43170656 1.775936812 2.648568088 0.145300479 1.028781713 1057.994036 1646805.327 0.358087458 0.306142757 3.11E-07 6.507182486 0.872631276 S(ph)VSPPK ddPTM_HeLa_A485_30min_R1 3 SVSPPK 6 0 O95696-2 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 S(0.995)VS(0.005)PPK;S(0.999)VS(0.001)PPK;S(0.997)VS(0.003)PPK ;; 88.942 0.016219 1441040000 4104230 3043440 2638440 5032700 3263930 2990990 3950850 2918670 3065630 6238700 TRUE FALSE FALSE 5017201.804 3399343.834 3614508.751 5307623.658 2938961.669 3147593.611 3106718.622 2202861.606 3680873.821 4683506.905 1.071248939 0.725811641 0.771752626 1.133258425 0.627513043 0.672059138 0.663331705 0.470344477 0.785922578 1 22.15915776 -5.802150775 24.99955324 0.673162258 0.900270671 0.273928559 0.171267191 187.4293161 115093.3038 0.051401845 0.058284859 1.58E-06 5.802150775 0.227108413 S(ph)VSPPK ddPTM_HeLa_A486_30min_R1 1 SVSPPK 6 0 O95696-2 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 S(0.993)VS(0.007)PPK 65.038 0.034271 643960000 1080800 1218600 632600 325520 1016600 1234700 1104800 1092100 999050 1333500 TRUE FALSE FALSE 1005041.501 1122033.698 877559.6616 757827.0109 889088.5486 1082375.268 828367.3546 843452.6704 1085648.458 999582.9204 1.005460858 1.122501871 0.877925827 0.758143217 0.889459524 1.082826893 0.828712994 0.843804604 1.086101449 1 19.93096673 -4.767302012 24.99711313 0.910852518 1.063981375 0.223294494 0.105445843 176.7530403 753652.382 0.027927591 0.06071267 1.71E-05 4.767302012 0.153128857 S(ph)VSPPPKR ddPTM_HeLa_A485_30min_R1 5 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.994)VS(0.006)PPPKR;S(0.993)VS(0.007)PPPKR;S(0.935)VS(0.065)PPPKR;S(0.645)VS(0.355)PPPKR;S(0.988)VS(0.012)PPPKR ;;;; 90.108 0.002313 5083640000 6291500 7780550 6003720 7364040 7987370 8111060 9705840 10574200 6708040 12039000 TRUE FALSE FALSE 7691022.47 8690417.641 8224745.864 7766318.858 7192119.397 8535742.56 7632107.995 7980860.87 8054282.098 9037898.861 0.850974611 0.961552876 0.910028535 0.859305794 0.795773388 0.944438823 0.844456008 0.883043835 0.89116754 1 23.10755598 -8.366275114 2.903399095 0.999997909 0.882265567 0.37022541 0.04619605 5.300821505 40.64715691 0.04506498 0.012034994 4.30E-09 8.366275114 -0.117732343 S(ph)VSPPPKR ddPTM_HeLa_A486_30min_R1 3 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.897)VS(0.103)PPPKR;S(0.958)VS(0.042)PPPKR;S(0.933)VS(0.067)PPPKR ;; 86.624 0.0026647 2094440000 5110120 4774000 3351670 1793238 5558500 5017220 5316260 5206240 4422640 6452810 TRUE FALSE FALSE 4751926.977 4395690.853 4649526.385 4174748.689 4861301.099 4398246.408 3986075.518 4020892.803 4805997.996 4836984.375 0.982415201 0.908766808 0.961244863 0.863089141 1.005027249 0.909295145 0.824082777 0.831280916 0.993593864 1 22.20567645 -6.510829458 24.90109949 0.893680824 0.940452651 0.026838219 0.065860591 1353.937066 2798060.882 0.023348387 0.019503189 3.08E-07 6.510829458 0.046771826 S(ph)VSPSPVPLLFQPDQNAPPIR ddPTM_HeLa_A485_30min_R1 2 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.554)VS(0.437)PS(0.009)PVPLLFQPDQNAPPIR;S(0.333)VS(0.333)PS(0.333)PVPLLFQPDQNAPPIR ; 202.35 1.69E-26 480655000 35495.7 45725.2 30495.5 43648.8 64190 33316.8 61323 56192.4 42804.2 67704 TRUE FALSE FALSE 43391.59601 51072.36438 41777.05447 46033.22342 57799.01822 35061.21613 48220.84009 42411.12579 51394.61032 50826.6388 0.853717598 1.004834583 0.821951942 0.905690884 1.137179628 0.689819688 0.948731634 0.834427119 1.011174682 1 15.63329721 -7.786696178 24.80927863 1.00558757 0.903242251 0.123830564 0.112485974 518.2323999 509034.0304 0.103403652 0.026742965 1.63E-08 7.786696178 -0.102345319 S(ph)VSPSPVPLLFQPDQNAPPIR ddPTM_HeLa_A486_30min_R1 1 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.499)VS(0.499)PS(0.002)PVPLLFQPDQNAPPIR 136.26 5.40E-07 64658000 19633 18403 11677 4742.1 18342 16228 22415 16382 14246 13683 TRUE FALSE FALSE 18256.82808 16944.67926 16198.64712 11039.84845 16041.37533 14225.95435 16806.52992 12652.17622 15480.85475 10256.68774 1.779992581 1.652061532 1.579325366 1.076356104 1.563991781 1.386993025 1.638592336 1.233553808 1.509342504 1 13.32427729 -1.000000641 0.039107614 6.82E-09 3.791888169 0.435879909 0.185628098 851.222579 2.54228869 68.49415419 216.5262437 0.099999852 1.000000641 3.791888162 S(ph)VSQDLIK ddPTM_HeLa_A485_30min_R1 3 SVSQDLIK 8 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.981)VS(0.019)QDLIK;S(0.999)VS(0.001)QDLIK;S(0.961)VS(0.039)QDLIK ;; 155.26 0.00013562 1542330000 1456880 1144310 1048430 1962170 1791000 1380150 1836410 1655220 1275750 2611300 TRUE FALSE FALSE 1780957.93 1278127.1 1436287.886 2069358.379 1612681.751 1452412.52 1444046.001 1249274.7 1531781.323 1960350.967 0.908489326 0.651988915 0.732668746 1.055606069 0.822649504 0.740894128 0.73662626 0.637270938 0.781381165 1 20.90268054 -6.22814507 7.892028177 0.753904538 0.830967342 0.024284359 0.131764014 0.838376798 178.1896257 0.044513753 0.044043245 5.91E-07 6.22814507 0.077062804 S(ph)VSQDLIK ddPTM_HeLa_A486_30min_R1 4 SVSQDLIK 8 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.99)VS(0.01)QDLIK;S(0.993)VS(0.007)QDLIK;S(0.994)VS(0.006)QDLIK;S(0.997)VS(0.003)QDLIK ;;; 145.28 0.00033352 1618490000 2760410 2898440 1639360 1274070 2697180 3346820 3607880 3662150 2392700 3768130 TRUE FALSE FALSE 2566919.514 2668757.058 2274164.096 2966099.348 2358874.534 2933923.376 2705150.264 2828358.389 2600101.163 2824565.722 0.90878378 0.944838011 0.80513761 1.050108102 0.835128217 1.038716626 0.957722542 1.001342744 0.920531302 1 21.42959764 -6.272421689 24.98716553 0.982125304 0.912892824 0.233014961 0.06767913 1180.880709 2686755.761 0.022316506 0.019859474 5.34E-07 6.272421689 -0.069232479 S(ph)VSQDLIKK ddPTM_HeLa_A485_30min_R1 1 SVSQDLIKK 9 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.999)VS(0.001)QDLIKK 143.86 6.37E-05 195520000 569130 427440 291480 644880 630680 549300 854600 833640 454450 969690 TRUE FALSE FALSE 695731.005 477425.3898 399310.5815 680108.1615 567887.2847 578060.4986 672007.7286 629188.4829 545653.9465 727964.1288 0.955721549 0.655836422 0.548530574 0.934260542 0.78010339 0.794078274 0.923133025 0.864312482 0.749561585 1 19.47350784 -5.285822082 24.93752049 0.85408229 0.713610138 0.230793134 0.119079032 1089.003299 1113780.773 0.033320113 0.04944814 5.18E-06 5.285822082 -0.140472152 S(ph)VSQDLIKK ddPTM_HeLa_A486_30min_R1 2 SVSQDLIKK 9 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.979)VS(0.021)QDLIKK;S(0.999)VS(0.001)QDLIKK ; 155.66 2.30E-05 408290000 1116160 1082730 461060 532590 1005580 1283970 1561860 1543530 779420 1572280 TRUE FALSE FALSE 1037922.948 996930.5316 639594.7796 1239896.436 879450.7797 1125566.836 1171066.108 1192101.914 846980.7532 1178570.854 0.880662324 0.845880863 0.542686744 1.052033852 0.746201025 0.955026872 0.993632334 1.011480905 0.718650686 1 20.16860706 -5.285116192 24.99544163 0.922392411 0.765356968 0.249956409 0.133724468 1128.884726 1191753.048 0.037058918 0.055002091 5.19E-06 5.285116192 -0.157035443 S(ph)VSS(ph)QR ddPTM_HeLa_A486_30min_R1 1 SVSSQR 6 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.993)VS(0.255)S(0.752)QR 79.148 0.013937 0 597460 320660 244460 117520 181720 426930 298980 234500 581930 754200 TRUE FALSE FALSE 555581.1393 295249.7338 339121.4589 273592.4991 158926.9831 374259.7173 224172.0417 181109.4691 632372.1609 565343.411 0.982732139 0.522248474 0.599850378 0.483940369 0.281115832 0.662004208 0.396523666 0.32035302 1.118562892 1 19.10876796 -7.770964641 24.99992176 1.059281843 0.523066236 0.552788655 0.189920592 161.2468688 423191.9733 0.174144862 0.047328898 1.69E-08 7.770964641 -0.536215608 S(ph)VSS(ph)QRS(ph)R ddPTM_HeLa_A485_30min_R1 2 SVSSQRSR 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.997)VS(0.027)S(0.976)QRS(1)R;S(1)VS(0.005)S(0.995)QRS(1)R ; 109.6 0.011957 1037230000 1893910 1965870 1750860 3763400 2453800 2851700 2902800 3599700 2416400 3214500 TRUE FALSE FALSE 2315203.746 2195761.396 2398575.973 3968985.013 2209491.056 3001010.602 2282593.066 2716867.931 2901349.315 2413184.308 0.959397812 0.909902069 0.993946449 1.644708611 0.915591506 1.243589473 0.945884265 1.125843526 1.202290809 1 21.20250668 -5.018986774 24.98095113 1.157818774 0.938968387 0.185400133 0.19421065 1149.957228 1513005.335 0.0511658 0.090541654 9.57E-06 5.018986774 -0.218850387 S(ph)VSS(ph)QRS(ph)R ddPTM_HeLa_A486_30min_R1 1 SVSSQRSR 8 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.974)VS(0.064)S(0.962)QRS(1)R 110.15 0.011717 485470000 828560 624550 668050 465300 803340 1033300 870480 772930 991310 1135500 TRUE FALSE FALSE 770482.2227 575058.3834 926736.851 1083241.915 702577.6064 905821.9518 652676.697 596950.7119 1077237.549 851163.4091 0.905210697 0.67561455 1.088788405 1.272660342 0.825432107 1.064216274 0.766805398 0.701335026 1.265606037 1 19.69907661 -4.733739324 0.009973611 1.860767001 4.09E-05 0.016214971 0.204789145 45965.84939 83.74681776 7337.725123 8303.895867 1.85E-05 4.733739324 -1.860726123 S(ph)VSSFPVPQDNVDTHPGSGK ddPTM_HeLa_A485_30min_R1 2 SVSSFPVPQDNVDTHPGSGK 20 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-4;Q676U5-2;C9JAY7;Q676U5-5 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 S(1)VSSFPVPQDNVDTHPGSGK;S(0.999)VS(0.001)SFPVPQDNVDTHPGSGK ; 207.83 1.13E-26 909830000 730790 750650 600520 702210 1020190 800460 1088990 1176100 668560 1020030 TRUE FALSE FALSE 893351.7143 838431.9877 822677.3377 740569.9542 918616.3015 842370.8479 856318.3903 887659.6309 802733.8596 765755.2933 1.166628193 1.094908511 1.07433451 0.96711046 1.199621223 1.100052269 1.118266368 1.1591949 1.048290318 1 19.54652391 -7.990071919 8.167454509 1.00000977 1.106408045 0.263984386 0.059874132 0.162850166 78.13005756 0.058389132 0.015099135 1.02E-08 7.990071919 0.106398275 S(ph)VSSFPVPQDNVDTHPGSGK ddPTM_HeLa_A486_30min_R1 3 SVSSFPVPQDNVDTHPGSGK 20 0 Q676U5-3;Q676U5;E7EVC7;Q676U5-4;Q676U5-2;C9JAY7;Q676U5-5 Q676U5-3 ATG16L1 Autophagy-related protein 16-1 1 0 S(0.995)VS(0.004)S(0.001)FPVPQDNVDTHPGSGK;S(0.73)VS(0.198)S(0.072)FPVPQDNVDTHPGSGK;S(0.772)VS(0.184)S(0.045)FPVPQDNVDTHPGSGK ;; 164.96 1.68E-13 991670000 840950 793960 522440 324919 859030 895730 1110730 1124600 678290 1158570 TRUE FALSE FALSE 782003.7477 731043.718 724742.7594 756427.8525 751282.4473 785223.9397 832813.6059 868553.1298 737084.7233 868456.531 0.900452377 0.841773528 0.834518175 0.871002549 0.865077779 0.904160325 0.958958308 1.000111231 0.848729553 1 19.72809411 -6.494941096 2.592860151 0.95180836 0.859936262 0.492090538 0.042654633 0.238823425 3.211709203 0.016996002 0.013584224 3.20E-07 6.494941096 -0.091872098 S(ph)VSSPTSSNTPTPTK ddPTM_HeLa_A485_30min_R1 3 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(0.527)VS(0.473)SPTSSNTPTPTK;S(0.973)VS(0.027)S(0.001)PTSSNTPTPTK;S(0.994)VS(0.006)SPTSSNTPTPTK ;; 244.01 2.47E-41 479256000 628686 528004 409432 459830 467317 376306 560536 682122 440438 623019 TRUE FALSE FALSE 768535.0318 589749.4748 560897.9347 484949.3485 420789.2786 396008.8003 440772.9044 514830.51 528829.8667 467711.8291 1.643180659 1.260924865 1.199238291 1.036855 0.899676366 0.846694002 0.94240273 1.100742974 1.13067456 1 18.83526039 -4.180518522 0.999451559 0.984629123 2.049613498 0.838921446 0.087423862 0.932932631 0.676814422 0.032932314 1.109110435 6.60E-05 4.180518522 1.064984374 S(ph)VSSPTSSNTPTPTK ddPTM_HeLa_A486_30min_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(1)VSSPTSSNTPTPTK 309.91 7.96E-78 73023000 103790 88070 34955 33281 52359 73641 76122 105870 46175 73854 TRUE FALSE FALSE 96514.85697 81091.01245 48490.51213 77479.84993 45791.64599 64555.92215 57075.47046 81765.71213 50177.48618 55360.47769 1.743389165 1.464781661 0.875904872 1.399551687 0.827154098 1.166101248 1.030978648 1.47696905 0.906377406 1 15.75656877 -4.557995123 4.926408871 1.106083602 1.687936553 0.523202006 0.204920096 0.124523608 7.268991285 0.049224515 0.149469457 2.77E-05 4.557995123 0.581852952 S(ph)VSSSPWLPQDGFDPSDYAEPMDAVVKPR ddPTM_HeLa_A485_30min_R1 2 SVSSSPWLPQDGFDPSDYAEPMDAVVKPR 29 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 S(0.935)VS(0.029)S(0.029)S(0.007)PWLPQDGFDPSDYAEPMDAVVKPR;S(0.972)VS(0.023)S(0.004)S(0.001)PWLPQDGFDPSDYAEPMDAVVKPR ; 139.16 3.84E-07 331820000 117846 119335 92806 124004 135928 138101 175077 150456 98585 154147 TRUE FALSE FALSE 144060.4361 133290.1902 127138.8014 130778.0245 122394.531 145331.7548 137670.3687 113556.4301 118370.1052 115720.9898 1.244894608 1.1518238 1.09866673 1.130114984 1.057669238 1.255880676 1.189675002 0.981295012 1.022892264 1 16.82029104 -7.264235256 24.97656525 1.001570219 1.156935792 0.615345385 0.057845919 177.8676877 1588934.502 0.031529969 0.016209094 5.44E-08 7.264235256 0.155365573 S(ph)VSSSPWLPQDGFDPSDYAEPMDAVVKPR ddPTM_HeLa_A486_30min_R1 1 SVSSSPWLPQDGFDPSDYAEPMDAVVKPR 29 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 S(0.997)VS(0.003)SSPWLPQDGFDPSDYAEPMDAVVKPR 166.65 2.29E-14 145450000 98317 103400 63079 30419 110070 105310 111960 117640 95870 126890 TRUE FALSE FALSE 91425.48601 95206.20742 87504.87811 70816.96929 96263.99424 92317.92291 83946.42381 90855.94006 104180.0888 95115.91808 0.961200689 1.000949256 0.919981428 0.74453331 1.012070284 0.970583313 0.882569663 0.955212775 1.095296044 1 16.53739918 -7.61758412 5.954718268 1.0455131 0.927253265 0.286845074 0.074640516 0.275266504 14.05017179 0.054181084 0.019720635 2.41E-08 7.61758412 -0.118259835 S(ph)VSSSSYR ddPTM_HeLa_A485_30min_R1 3 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.922)VS(0.049)S(0.02)S(0.008)SYR;S(0.822)VS(0.164)S(0.014)SSYR;S(0.946)VS(0.025)S(0.025)S(0.005)SYR ;; 125.71 0.00060774 1654330000 644510 670270 670340 584480 883260 593980 859950 751700 523740 725760 TRUE FALSE FALSE 787879.026 748652.2459 918326.6612 616408.6624 795319.5331 625079.8743 676214.6574 567344.3964 628849.814 544841.3886 1.446070439 1.374073742 1.685493577 1.131354327 1.45972672 1.147269439 1.241122043 1.041301943 1.154188773 1 19.05547678 -6.372360234 0.552161828 1.02592151 1.496615414 0.574245914 0.134382987 0.645756094 0.422743117 0.112155766 0.122505127 4.24E-07 6.372360234 0.470693904 S(ph)VSSSSYR ddPTM_HeLa_A486_30min_R1 6 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.989)VS(0.01)SSSYR;S(0.759)VS(0.158)S(0.06)S(0.023)SYR;S(0.992)VS(0.008)SSSYR;S(0.773)VS(0.055)S(0.103)S(0.069)SYR;S(0.997)VS(0.002)S(0.001)SSYR;S(1)VSSSSYR ;;;;; 129.83 0.00055594 2426240000 799694 1090410 1193946 419468 1200920 1118470 1262570 1259730 842960 925830 TRUE FALSE FALSE 743639.5802 1004001.94 1656273.866 976542.7027 1050289.415 980484.5432 946661.6319 972916.9787 916028.4515 693996.1419 1.07153273 1.446696718 2.386575034 1.407129873 1.513393738 1.41280979 1.364073335 1.401905457 1.319933061 1 19.40456812 -7.848538835 0.507727643 1.00228448 1.60024714 0.213858772 0.313937686 1.513964842 0.992660424 0.370195367 0.191118684 1.42E-08 7.848538835 0.59796266 S(ph)VSSSSYRR ddPTM_HeLa_A485_30min_R1 1 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.484)VS(0.484)S(0.032)S(0.001)SYRR 70.412 0.008605 334530000 53118 109930 109620 30018 85954 114520 92196 147450 93046 44429 TRUE FALSE FALSE 64933.91585 122785.3572 150172.9997 31657.80733 77396.11796 120516.0901 72497.57143 111287.6563 111719.4787 33353.66796 1.946829834 3.681314973 4.502443326 0.949155199 2.320467964 3.613278464 2.173601162 3.336594238 3.349541012 1 15.02555781 -10.45352561 2.985953657 0.95598423 2.888133352 0.246721129 0.982520856 116429498.3 135656371.8 42812619.47 0.250816205 3.52E-11 10.45352561 1.932149122 S(ph)VSTLKPCAK ddPTM_HeLa_A485_30min_R1 2 SVSTLKPCAK 10 1 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;F8VZV1 A0A286YFF8 MON2 Protein MON2 homolog 1 0 S(0.969)VS(0.03)T(0.001)LKPCAK;S(0.966)VS(0.03)T(0.004)LKPCAK ; 77.185 0.0045789 2624100000 2861900 2600200 1789260 3681300 3817700 3158300 4431300 4501800 2631300 4425000 TRUE FALSE FALSE 3498519.782 2904270.771 2451181.731 3882400.097 3437596.383 3323663.704 3484516.555 3397726.491 3159377.774 3321928.936 1.053159128 0.874272396 0.737879039 1.168718589 1.034819362 1.000522217 1.048943738 1.022817332 0.951067237 1 21.66358978 -5.264604757 24.99855518 1.032823665 0.887020414 0.359202188 0.088115858 305.364963 2411622.419 0.024811156 0.038648749 5.44E-06 5.264604757 -0.145803251 S(ph)VSTLKPCAK ddPTM_HeLa_A486_30min_R1 2 SVSTLKPCAK 10 1 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;F8VZV1 A0A286YFF8 MON2 Protein MON2 homolog 1 0 S(0.961)VS(0.018)T(0.021)LKPCAK;S(0.959)VS(0.035)T(0.006)LKPCAK ; 102.87 0.00060939 2665900000 4634200 4480000 2216370 1853540 4232000 4680000 5748200 5682900 3368500 5373300 TRUE FALSE FALSE 4309366.511 4124988.484 3074607.82 4315134.793 3701183.098 4102629.183 4309939.562 4389027.727 3660484.292 4027790.706 1.069908251 1.024131785 0.763348457 1.071340372 0.918911475 1.018580528 1.070050526 1.089686145 0.908806976 1 21.94155729 -6.44490258 9.995897297 1.027406454 0.966871056 0.055970699 0.094363844 1.44393542 178.9924021 0.033231197 0.029277372 3.59E-07 6.44490258 -0.060535398 S(ph)VSTMNLSK ddPTM_HeLa_A485_30min_R1 2 SVSTMNLSK 9 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 S(0.975)VS(0.024)TMNLSK;S(0.809)VS(0.171)T(0.02)MNLSK ; 166.11 9.46E-06 499240000 760470 726950 558800 903180 1044490 903450 1144950 1303280 695380 1218490 TRUE FALSE FALSE 929633.9279 811960.4789 765523.3736 952518.4364 940496.9082 950753.245 900322.0791 983648.5365 834936.3876 914742.8676 1.016278957 0.887637945 0.836872744 1.04129638 1.028154404 1.039366666 0.984235145 1.075327911 0.912755286 1 19.80300674 -5.278828378 24.97930602 1.015437149 0.911000682 0.371759261 0.058197662 756.9255875 1087322.084 0.015965415 0.02374574 5.26E-06 5.278828378 -0.104436467 S(ph)VSTMNLSK ddPTM_HeLa_A486_30min_R1 2 SVSTMNLSK 9 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 S(0.913)VS(0.079)T(0.007)MNLSK;S(0.988)VS(0.006)T(0.006)MNLSK ; 147.58 8.67E-05 721240000 874640 867590 542280 330430 926300 886500 1046890 991950 755890 1116090 TRUE FALSE FALSE 813332.2526 798839.0087 752265.3388 769257.739 810114.8166 777132.6433 784947.0491 766104.6391 821411.1538 836613.7995 0.972171692 0.954847995 0.899178736 0.919489661 0.968325907 0.928902492 0.93824301 0.915720778 0.981828359 1 19.67420227 -7.915025819 5.204880062 0.999502082 0.9368044 0.497428851 0.021954538 0.156469127 6.535658981 0.021859087 0.005698316 1.22E-08 7.915025819 -0.062697682 S(ph)VVDMDLDDTDDGDDNAPLFYQPGKR ddPTM_HeLa_A485_30min_R1 2 SVVDMDLDDTDDGDDNAPLFYQPGKR 26 1 E7EMW7;O95071-2;O95071;E7ET84 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 S(1)VVDMDLDDTDDGDDNAPLFYQPGKR;S(1)VVDMDLDDTDDGDDNAPLFYQPGKR ; 299.36 1.86E-90 398640000 188731 190056 141869 190093 215639 237681 319930 351320 181151 287670 TRUE FALSE FALSE 230713.5598 212281.3959 194352.2468 200477.2992 194169.224 250125.6096 251574.3419 265158.2192 217506.3441 215959.1632 1.068320309 0.98297008 0.899949064 0.928311151 0.899101576 1.158207904 1.164916266 1.227816478 1.007164229 1 17.72039901 -6.266293882 24.99051409 1.129190467 0.952621489 0.480507133 0.079976893 326.0449853 1678443.803 0.027794998 0.025278747 5.42E-07 6.266293882 -0.176568977 S(ph)VVDMDLDDTDDGDDNAPLFYQPGKR ddPTM_HeLa_A486_30min_R1 2 SVVDMDLDDTDDGDDNAPLFYQPGKR 26 1 E7EMW7;O95071-2;O95071;E7ET84 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 S(1)VVDMDLDDTDDGDDNAPLFYQPGKR;S(1)VVDMDLDDTDDGDDNAPLFYQPGKR ; 347.28 1.34E-142 303750000 223723 195801 95733 81120 169367 185669 220209 220430 168985 275040 TRUE FALSE FALSE 208041.173 180285.0157 132803.3814 188851.4596 148123.4116 162763.0465 165110.3791 170242.901 183632.7559 206168.1938 1.009084715 0.874456008 0.644150676 0.916006762 0.718459084 0.789467296 0.800852818 0.825747647 0.890693916 1 17.65346226 -8.05783596 2.131090474 0.999608023 0.815093117 0.24741306 0.09529559 0.519007826 5.327434929 0.090790553 0.025144685 8.75E-09 8.05783596 -0.184514906 S(ph)VVGTPAYLAPEVLR ddPTM_HeLa_A485_30min_R1 1 SVVGTPAYLAPEVLR 15 0 O94806;F8WBA3;Q15139;H0Y5M6 O94806 PRKD3;PRKD1 Serine/threonine-protein kinase D3;Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 0 S(1)VVGTPAYLAPEVLR 258.41 2.53E-50 154050000 26175 41116 31498 35006 49729 43064 46468 55514 39421 52807 TRUE FALSE FALSE 31997.53845 45924.15854 43150.42094 36918.28914 44777.80615 45318.76445 36539.73219 41899.10446 47332.43311 39643.18674 0.807138403 1.158437611 1.088470037 0.931264416 1.129520854 1.143166536 0.921715311 1.056905559 1.193961359 1 15.27478532 -4.248295277 24.32179679 1.066917741 0.807138158 0.439585573 0.08875658 1458.869085 2699418.445 0.022040879 0.395061216 5.65E-05 4.248295277 -0.259779583 S(ph)VVS(ph)FDKVK ddPTM_HeLa_A485_30min_R1 1 SVVSFDKVK 9 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 2 0 S(1)VVS(1)FDKVK 49.423 0.0078564 0 214610 134720 91445 381120 243730 198930 362530 291240 169640 602060 TRUE FALSE FALSE 262349.2541 150474.3321 125274.3108 401939.6206 219463.3854 209345.6672 285072.5039 219812.9334 203685.192 451977.5221 0.580447569 0.332924371 0.277169339 0.889291172 0.48556261 0.463177165 0.630722746 0.486335985 0.450653367 1 18.7858915 -10.31187241 3.318815508 1.002524365 0.510412834 0.457184308 0.159947632 138035810.5 195821512 3477004.212 0.041852775 4.88E-11 10.31187241 -0.492111531 S(ph)VVS(ph)FDKVK ddPTM_HeLa_A486_30min_R1 2 SVVSFDKVK 9 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 2 0 S(1)VVS(1)FDKVK;S(1)VVS(1)FDKVK ; 82.543 0.0071535 300250000 956880 709520 221380 494370 535970 1068290 1381060 1264290 622890 2043930 TRUE FALSE FALSE 889807.6533 653295.0512 307104.2648 1150918.344 468743.6449 936495.2414 1035504.181 976438.7663 676882.6067 1532116.624 0.580770184 0.426400341 0.200444444 0.751194998 0.305945146 0.611242791 0.675865116 0.637313603 0.441795746 1 20.54709469 -14 0.164771129 2.857814781 0.391014133 0.460161054 0.160664749 116.3810848 1.082958213 70.50908583 0.620364136 1.00E-14 14 -2.466800648 S(ph)VVSDLEADDVK ddPTM_HeLa_A486_30min_R1 1 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 S(1)VVSDLEADDVK 80.312 0.0060291 23023000 33214 39031 17955 21315 29742 55757 60202 54448 37149 71265 TRUE FALSE FALSE 30885.87012 35938.04141 24907.65685 49622.3972 26011.48103 48878.26824 45138.82285 42051.37899 40369.10523 53419.78014 0.578172917 0.672747835 0.466262811 0.928914291 0.486926022 0.914984452 0.844983314 0.787187422 0.755695833 1 15.70508642 -3.762914115 0.114125117 1.123511196 9.09E-12 0.405929056 0.137221973 51.11219912 0.816448708 1.489999486 9.137158744 0.000172618 3.762914115 -1.123511196 S(ph)VVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK ddPTM_HeLa_A485_30min_R1 2 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 S(0.494)VVS(0.494)DLEADDVKGS(0.01)VPLSSSPPATHFPDETEITNPVPK;S(0.531)VVS(0.469)DLEADDVKGSVPLSSSPPATHFPDETEITNPVPK ; 168.9 5.95E-15 887610000 110830 86493.2 79237 109130 144096.6 102200 187660 224447 97306 206880 TRUE FALSE FALSE 135483.7511 96607.82735 108550.0636 115091.4956 129749.8366 107551.034 147564.908 169401.0213 116834.4217 155308.6233 0.872351761 0.622037755 0.698931336 0.741050259 0.835432275 0.692498791 0.950139823 1.090738027 0.752272599 1 17.24477841 -6.770294422 24.8085553 0.955849195 0.740198098 0.485549269 0.103002539 143.4144828 401789.8495 0.041158409 0.028222366 1.70E-07 6.770294422 -0.215651097 S(ph)VVSFDK ddPTM_HeLa_A485_30min_R1 4 SVVSFDK 7 0 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 S(1)VVSFDK;S(0.997)VVS(0.003)FDK;S(1)VVSFDK;S(1)VVSFDK ;;; 146.23 0.0011849 2489410000 3240760 2331100 1828700 3094440 3444750 3065350 4466920 3804810 2299810 4367850 TRUE FALSE FALSE 3961655.882 2603701.867 2505212.229 3263481.422 3101778.595 3225846.986 3512526.051 2871674.382 2761360.772 3279025.379 1.208180915 0.794047488 0.764011235 0.99525958 0.945945284 0.983782256 1.071210389 0.875770709 0.842128515 1 21.64483564 -4.244754349 24.5190805 0.920388935 1.208181209 0.461023685 0.093751866 2597.716993 3817334.959 0.025081151 0.666317159 5.69E-05 4.244754349 0.287792274 S(ph)VVSFDK ddPTM_HeLa_A486_30min_R1 4 SVVSFDK 7 0 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 S(1)VVSFDK;S(1)VVSFDK;S(1)VVSFDK;S(0.998)VVS(0.002)FDK ;;; 168.74 0.00036276 2715290000 3977820 3348150 1820000 1303750 3193800 3959690 4581580 4193050 2677950 4804990 TRUE FALSE FALSE 3698995.359 3082830.4 2524752.741 3035195.888 2793203.823 3471183.707 3435220.225 3238384.049 2910076.862 3601789.229 1.02698829 0.855916381 0.700971817 0.842691145 0.775504519 0.963738711 0.953753817 0.899104263 0.807953125 1 21.78028233 -6.26744795 24.93569392 0.920406738 0.833655322 0.177165318 0.090202914 894.6550846 3712825.581 0.032522142 0.029442294 5.40E-07 6.26744795 -0.086751416 S(ph)VVSFDKVKEPR ddPTM_HeLa_A486_30min_R1 1 SVVSFDKVKEPR 12 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 S(0.523)VVS(0.477)FDKVKEPR 77.222 0.0035287 228160000 498660 367850 209620 332320 557650 538860 864280 910500 321900 1042100 TRUE FALSE FALSE 463706.5091 338700.2263 290790.4778 773657.7545 487704.3371 472380.9319 648028.0026 703199.0261 349802.5512 781151.3771 0.593619269 0.433591025 0.372258805 0.990406952 0.624340367 0.604723932 0.829580567 0.900208393 0.447803795 1 19.57524263 -4.574743822 0.115349113 1.106973488 2.17E-20 0.271976093 0.189869243 52.93179351 1.120606805 2.406943969 10.0322562 2.66E-05 4.574743822 -1.106973488 S(ph)WASPVYTEADGTFSR ddPTM_HeLa_A485_30min_R1 6 SWASPVYTEADGTFSR 16 0 E9PMS6;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.999)WAS(0.001)PVYTEADGTFSR;S(0.998)WAS(0.002)PVYTEADGTFSR;S(0.999)WAS(0.001)PVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(0.999)WAS(0.001)PVYTEADGTFSR;S(1)WASPVYTEADGTFSR ;;;;; 295.37 1.64E-67 6661350000 1730130 1962295 1729250 1626927 2284892 2046490 2178532 2478441 1698470 2219580 TRUE FALSE FALSE 2114991.45 2191768.331 2368971.535 1715801.902 2057400.13 2153641.052 1713070.841 1870599.459 2039337.35 1666279.554 1.269289684 1.315366515 1.421713139 1.029720312 1.234726865 1.292484833 1.028081295 1.122620423 1.223886679 1 20.66819903 -1 0.092341071 0.880841911 2.159371166 0.380911156 0.106075227 157.517127 1.044670587 1.831000644 25.49955511 0.1 1 1.278529255 S(ph)WASPVYTEADGTFSR ddPTM_HeLa_A486_30min_R1 6 SWASPVYTEADGTFSR 16 0 E9PMS6;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.951)WAS(0.049)PVYTEADGTFSR;S(0.981)WAS(0.019)PVYTEADGTFSR;S(0.567)WAS(0.433)PVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(1)WASPVYTEADGTFSR ;;;;; 336.23 8.07E-91 7049020000 2762810 3165640 2338390 1073899 3152740 2599680 2971130 3119890 2418820 2776660 TRUE FALSE FALSE 2569151.286 2914783.157 3243877.232 2500091.144 2757293.951 2278957.913 2227721.849 2409559.154 2628485.265 2081366.263 1.234358091 1.400418182 1.558532628 1.201177894 1.324751919 1.094933628 1.070317074 1.157681469 1.262865317 1 20.98909943 -5.91620269 1.620705268 1.125736937 1.384092552 0.501941042 0.111530991 0.3171594 1.712859629 0.042915086 0.050879218 1.21E-06 5.91620269 0.258355616 S(ph)WDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR ddPTM_HeLa_A485_30min_R1 2 SWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR 56 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 S(1)WDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR;S(1)WDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR ; 121.56 2.25E-11 580260000 0 2469 2529.6 2169.4 0 1838.8 0 0 0 2861.2 TRUE FALSE FALSE 0 2757.728073 3465.404305 2287.908829 0 1935.076725 0 0 0 2147.955496 0 1.283885107 1.613350142 1.065156533 0 0.900892373 0 0 0 1 11.06874839 -5.748621861 24.71508577 0.280178495 1.056029623 0.283108752 0.51915654 236.228578 455499.8212 0.154360463 0.19792389 1.78E-06 5.748621861 0.775851128 S(ph)WDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR ddPTM_HeLa_A486_30min_R1 1 SWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR 56 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 S(1)WDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR 80.502 8.83E-06 221160000 1446.7 2928.9 0 0 0 0 2120.3 2517.6 0 3595.8 TRUE FALSE FALSE 1345.293801 2696.803297 0 0 0 0 1589.778514 1944.397439 0 2695.388275 0.499109465 1.000524979 0 0 0 0 0.589814287 0.721379349 0 1 11.3962774 -11.01925202 2.868711033 1.776785957 0.316005966 0.255371998 0.352234382 191116050.4 92989906.74 977450980.9 0.095951603 9.57E-12 11.01925202 -1.460779991 S(ph)WDQQIK ddPTM_HeLa_A485_30min_R1 1 SWDQQIK 7 0 F8W8D3;Q14493;E7EUV9;Q14493-2;H0YAE8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 S(1)WDQQIK 90.263 0.0067616 232810000 355100 184600 131770 1014900 262010 345540 507450 417400 217700 882660 TRUE FALSE FALSE 434090.7699 206187.3642 180517.2064 1070341.417 235923.3644 363631.9401 399029.162 315031.9955 261390.3931 662629.1062 0.655103686 0.311165571 0.272425713 1.615294902 0.356041354 0.548771457 0.602190816 0.475427343 0.394474663 1 19.33784205 S(ph)WDQQIK ddPTM_HeLa_A486_30min_R1 1 SWDQQIK 7 0 F8W8D3;Q14493;E7EUV9;Q14493-2;H0YAE8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 S(1)WDQQIK 85.29 0.0077121 0 443170 400580 173150 1085700 385520 667040 705990 678170 255840 1375100 TRUE FALSE FALSE 412106.0715 368836.5819 240198.3171 2527564.468 337164.4868 584747.3868 529343.8348 523765.4953 278016.4172 1030766.01 0.399805647 0.357827653 0.233028946 2.452122446 0.327100897 0.567294014 0.513544131 0.508132292 0.269718263 1 19.97528544 S(ph)WEDS(ph)PER ddPTM_HeLa_A485_30min_R1 2 SWEDSPER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 S(1)WEDS(1)PER;S(1)WEDS(1)PER ; 163.12 7.75E-05 752090000 897040 810000 835680 1460330 1334260 734620 1121630 946180 924520 1773200 TRUE FALSE FALSE 1096583.453 904722.4539 1144832.808 1540104.13 1201416.39 773083.5673 881984.5876 714127.8714 1110062.684 1331173.873 0.823771767 0.679642586 0.860017486 1.156951891 0.902524016 0.580753261 0.662561522 0.536464759 0.833897589 1 20.34426759 -6.242685818 23.96166786 0.690003605 0.886963094 0.17993882 0.165500223 722.6374853 923322.8598 0.056278694 0.056168041 5.72E-07 6.242685818 0.196959489 S(ph)WGHES(ph)PEER ddPTM_HeLa_A485_30min_R1 1 SWGHESPEER 10 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 0 S(1)WGHES(1)PEER 101.53 0.003049 116970000 243590 372870 351550 278180 435890 265400 388980 387600 352990 348900 TRUE FALSE FALSE 297775.7551 416473.903 481602.9742 293376.269 392491.2611 279295.9336 305871.2453 292540.4923 423831.8552 261925.651 1.136871299 1.590046264 1.838701068 1.120074601 1.49848348 1.066317608 1.167778887 1.116883708 1.618138023 1 17.99879783 -5.289375552 24.95761027 1.233853854 1.52869037 0.237676208 0.241835955 987.8112852 882488.3465 0.067153641 0.099626688 5.14E-06 5.289375552 0.294836516 S(ph)WGHES(ph)PEER ddPTM_HeLa_A486_30min_R1 1 SWGHESPEER 10 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 2 0 S(1)WGHES(1)PEER 172.85 1.79E-07 194740000 175170 215650 191640 72693 243630 193080 205440 222450 199810 240490 TRUE FALSE FALSE 162891.4876 198561.1086 265848.1403 169232.9777 213071.6536 169259.7527 154036.7391 171802.991 217129.6917 180269.7387 0.903598623 1.101466669 1.474724168 0.938776408 1.181960185 0.938924935 0.854479183 0.953032896 1.204471107 1 17.45979771 -6.264584552 24.79079991 0.978764775 1.128696968 0.128556475 0.167075704 494.6293753 3898740.332 0.058803875 0.054065002 5.44E-07 6.264584552 0.149932193 S(ph)WGQQAQEYQEQK ddPTM_HeLa_A485_30min_R1 2 SWGQQAQEYQEQK 13 0 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.994)WGQQAQEY(0.006)QEQK;S(1)WGQQAQEYQEQK ; 258.16 2.78E-41 516040000 165171 163149 137293 219526 184616 194121 276790 285240 164697 327120 TRUE FALSE FALSE 201912.7191 182227.8563 188083.3939 231518.1495 166234.9828 204284.8754 217651.5553 215284.4428 197750.1772 245575.0042 0.822203871 0.74204562 0.765889813 0.942759424 0.676921429 0.831863471 0.886293603 0.876654542 0.805253686 1 17.9058042 -14 0.139895008 1.64933405 0.749224312 0.405071125 0.070129248 138.0919824 1.182476989 24.83113522 0.430656759 1.00E-14 14 -0.900109738 S(ph)WGQQAQEYQEQK ddPTM_HeLa_A486_30min_R1 2 SWGQQAQEYQEQK 13 0 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(1)WGQQAQEYQEQK;S(1)WGQQAQEYQEQK ; 252.82 3.94E-41 618430000 224720 231920 125636 91554 205535 216120 254530 258100 170420 269370 TRUE FALSE FALSE 208968.2885 213541.8146 174285.6238 213142.3389 179754.8838 189457.3117 190843.9019 199336.2643 185192.1428 201917.9987 1.034916599 1.057567012 0.863150511 1.055588607 0.890237051 0.938288379 0.945155474 0.987213946 0.917165107 1 17.62340999 -4.724280229 24.9999702 0.950245683 1.046242027 0.350824026 0.052579117 172.8330645 116276.5178 0.012344659 0.032659122 1.89E-05 4.724280229 0.095996344 S(ph)WHDVQVSSAYKK ddPTM_HeLa_A485_30min_R1 1 SWHDVQVSSAYKK 13 1 O43399-2;O43399-4;O43399-3;O43399-6 O43399-2 TPD52L2 Tumor protein D54 1 0 S(1)WHDVQVSSAYKK 106.36 0.00023811 421640000 164720 180770 109290 110090 158660 166870 183880 189920 111780 178280 TRUE FALSE FALSE 201361.3957 201909.479 149720.9189 116103.9379 142863.2533 175607.0552 144592.5358 143341.8222 134213.2207 133838.077 1.50451501 1.508610132 1.118672072 0.867495563 1.067433547 1.312085911 1.080354254 1.071009278 1.002802967 1 17.0301291 -4.784782405 5.142419282 1.067269695 1.512150632 0.741543568 0.104597849 0.086833816 6.079713451 0.02952002 0.069217022 1.64E-05 4.784782405 0.444880937 S(ph)WHDVQVSSAYKK ddPTM_HeLa_A486_30min_R1 3 SWHDVQVSSAYKK 13 1 O43399-2;O43399-4;O43399-3;O43399-6 O43399-2 TPD52L2 Tumor protein D54 1 0 S(1)WHDVQVSSAYKK;S(1)WHDVQVSSAYKK;S(1)WHDVQVSSAYKK ;; 159.19 2.72E-09 466980000 531790 438660 262178 113588 497950 406770 456080 453790 313860 516060 TRUE FALSE FALSE 494514.2672 403898.984 363700.343 264438.6044 435492.4678 356586.8531 341963.9601 350471.9232 341065.6375 386835.217 1.278358964 1.044111204 0.940194499 0.683594959 1.125782888 0.921805558 0.884004209 0.905997975 0.881681973 1 18.56135962 -4.365547751 2.200953015 0.912739401 1.328669125 0.530346255 0.103968482 0.383067595 2.527391749 0.027413752 0.285254207 4.31E-05 4.365547751 0.415929724 S(ph)WHDVQVSSAYVK ddPTM_HeLa_A485_30min_R1 3 SWHDVQVSSAYVK 13 0 O43399;O43399-5;O43399-7;A0A087WYR3 O43399 TPD52L2 Tumor protein D54 1 0 S(0.999)WHDVQVS(0.001)SAYVK;S(0.999)WHDVQVS(0.001)SAYVK;S(1)WHDVQVSSAYVK ;; 192.54 1.23E-17 1257390000 492330 525640 416370 351170 496530 397290 467470 549530 382080 449640 TRUE FALSE FALSE 601847.11 587109.0255 570402.5896 370353.5279 447093.7298 418091.4901 367591.2156 414756.9059 458759.9514 337553.023 1.782970582 1.739309043 1.689816268 1.097171415 1.324514074 1.23859501 1.088988072 1.228716313 1.359075227 1 18.36475461 -5.209908275 6.054546557 1.203947243 1.744089494 0.850170603 0.105058762 0.077348245 6.670949216 0.028035837 0.048700961 6.17E-06 5.209908275 0.54014225 S(ph)WHDVQVSSAYVK ddPTM_HeLa_A486_30min_R1 2 SWHDVQVSSAYVK 13 0 O43399;O43399-5;O43399-7;A0A087WYR3 O43399 TPD52L2 Tumor protein D54 1 0 S(1)WHDVQVSSAYVK;S(1)WHDVQVSSAYVK ; 172.32 2.44E-12 838060000 880780 780020 553680 140351 776510 602990 681020 704970 519960 667800 TRUE FALSE FALSE 819041.8704 718208.3744 768079.7241 326744.2209 679112.8751 528599.2246 510621.5929 544463.7204 565030.5515 500578.5334 1.636190559 1.43475664 1.534384063 0.652733186 1.356656009 1.055976614 1.020062905 1.087668935 1.128755058 1 18.9332369 -5.217236385 24.92280128 1.059413414 1.525075386 0.639741337 0.168828192 274.8918329 154990.7516 0.043247887 0.074907145 6.06E-06 5.217236385 0.465661972 S(ph)WITIPR ddPTM_HeLa_A485_30min_R1 1 SWITIPR 7 0 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 0 S(1)WITIPR 141.52 0.0014952 200880000 66105 82907 75027 71911 119620 84217 112550 116490 82342 96424 TRUE FALSE FALSE 80809.82919 92602.25245 102782.6094 75839.31584 107710.2128 88626.4719 88502.77305 87920.64485 98867.28411 72387.27135 1.116354128 1.279261543 1.419898934 1.047688557 1.487971722 1.224337791 1.222628943 1.214587084 1.365810346 1 16.14344841 -10.41121251 3.514766529 0.997741563 1.265646815 0.282771648 0.12625306 82916463.41 67524287.49 1722478.266 0.029668771 3.88E-11 10.41121251 0.267905252 S(ph)WITIPR ddPTM_HeLa_A486_30min_R1 2 SWITIPR 7 0 Q03188;H0Y8J2;Q03188-2 Q03188 CENPC Centromere protein C 1 0 S(1)WITIPR;S(1)WITIPR ; 143.28 0.001379 397660000 207490 241760 196246 95715 260390 241460 262070 261160 197116 231990 TRUE FALSE FALSE 192946.0225 222602.0571 272237.7069 222829.3572 227729.4582 211671.1202 196497.3141 201699.5691 214202.1736 173898.194 1.109534366 1.280071127 1.565500484 1.281378214 1.3095562 1.217212872 1.129956037 1.159871557 1.231767672 1 17.40788342 -6.422300648 2.175688681 1.142580109 1.323356837 0.336594783 0.117049481 0.402445888 3.760341848 0.050817309 0.042010939 3.78E-07 6.422300648 0.180776728 S(ph)WLPMGADYIIMNY(ph)SVKHPK ddPTM_HeLa_A485_30min_R1 1 SWLPMGADYIIMNYSVKHPK 20 1 H0YH17;H0YGA9;H0YFF3;F5H8G1;F5GY11;F5H1Z6;F5H8H3;Q9Y365 H0YH17 STARD10 PCTP-like protein 2 0 S(0.876)WLPMGADY(0.122)IIMNY(0.645)S(0.357)VKHPK 42.325 0.032036 822280000 206660 209580 92625 55309 157340 225410 208230 349380 175530 165450 TRUE FALSE FALSE 252630.804 234088.5579 126890.8419 58330.39062 141674.6771 237212.119 163739.9594 263694.0072 210757.2609 124206.3599 2.033960292 1.884674489 1.021613081 0.46962483 1.140639475 1.909822647 1.318289656 2.123031441 1.696831476 1 16.92237952 -6.251057945 24.67235086 1.661577928 1.279302716 0.075882808 0.500852539 1466.224295 3484606.265 0.179828508 0.177892518 5.61E-07 6.251057945 -0.382275212 S(ph)WRT(ph)S(ph)QRDT(ph)SDVK ddPTM_HeLa_A485_30min_R1 2 SWRTSQRDTSDVK 13 2 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9-3;Q8NFP9 Q5T321 NBEA Neurobeachin 4 0 S(0.999)WRT(0.999)S(0.999)QRDT(0.564)S(0.439)DVK;S(0.984)WRT(0.984)S(0.984)QRDT(0.524)S(0.524)DVK ; 80.411 0.0022189 420010000 645160 520620 437580 1037780 860250 608570 1039250 878310 646440 1319990 TRUE FALSE FALSE 788673.6162 581501.9802 599459.0512 1094471.294 774600.4895 640433.7842 817205.7476 662903.0954 776174.5785 990940.7856 0.795883697 0.586818091 0.604939326 1.104476987 0.781681914 0.646288652 0.82467667 0.668963378 0.783270393 1 19.91843933 -11.68776443 1.459495473 3.489851268 0.753200058 0.212058151 0.141503164 887898.2045 37772.79112 7280573.713 0.040673685 2.05E-12 11.68776443 -2.73665121 S(ph)WRT(ph)S(ph)QRDT(ph)SDVK ddPTM_HeLa_A486_30min_R1 1 SWRTSQRDTSDVK 13 2 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9-3;Q8NFP9 Q5T321 NBEA Neurobeachin 4 0 S(1)WRT(1)S(1)QRDT(0.546)S(0.455)DVK 65.472 0.0074776 508630000 659850 603550 399140 122340 704440 881250 1011600 905750 610990 727740 TRUE FALSE FALSE 613597.9225 555722.4999 553697.6973 284813.7027 616082.5666 772530.3349 758486.9804 699530.4974 663951.1051 545509.1672 1.124816885 1.018722568 1.015010802 0.522106171 1.12937161 1.416163799 1.390420228 1.282344165 1.21712181 1 19.05724392 -5.994924086 24.99952025 1.285358353 0.920448759 0.434334412 0.182561122 126.4561127 622805.0916 0.05751795 0.065001806 1.01E-06 5.994924086 -0.364909594 S(ph)WRT(ph)S(ph)QRDTS(ph)DVK ddPTM_HeLa_A486_30min_R1 1 SWRTSQRDTSDVK 13 2 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9-3;Q8NFP9 Q5T321 NBEA Neurobeachin 4 0 S(0.926)WRT(0.926)S(0.926)QRDT(0.41)S(0.811)DVK 42.633 0.029001 360600000 503040 533810 305030 88200 592340 728150 827370 787230 449570 538080 TRUE FALSE FALSE 467779.4937 491508.9515 423145.785 205334.0574 518043.1938 638318.2563 620353.275 607994.9141 488539.0896 403341.2657 1.15976106 1.218593269 1.049101148 0.509082692 1.284379353 1.582576122 1.538035722 1.507395761 1.21123012 1 18.62164149 -5.985694513 24.98878387 1.412783406 0.991923127 0.358003367 0.240922438 242.5254523 423640.3198 0.076182872 0.086347755 1.03E-06 5.985694513 -0.420860279 S(ph)WS(ph)TATSPLGGERPFR ddPTM_HeLa_A485_30min_R1 1 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.999)WS(0.328)T(0.282)AT(0.209)S(0.182)PLGGERPFR 66.779 0.01272 107910000 109870 135000 128350 100040 135150 93943 129400 134140 107750 129530 TRUE FALSE FALSE 134310.2025 150787.0757 175832.0061 105504.9319 121693.9915 98861.71022 101752.6329 101241.9547 129374.4367 97240.55482 1.381215921 1.55066038 1.808216813 1.084988995 1.251473644 1.016671598 1.046401196 1.041149496 1.330457615 1 16.5692705 -5.277873663 24.94593419 1.111213455 1.577093968 0.707860334 0.138321938 406.8275329 617530.8256 0.03898179 0.058005789 5.27E-06 5.277873663 0.465880513 S(ph)WS(ph)TATSPLGGERPFR ddPTM_HeLa_A486_30min_R1 1 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.996)WS(0.389)T(0.389)AT(0.072)S(0.154)PLGGERPFR 65.924 0.014897 176640000 166000 200620 152720 58106 204530 184140 178060 174850 152670 158660 TRUE FALSE FALSE 154364.2572 184722.1406 211857.274 135273.7045 178875.9402 161422.679 133507.5047 135040.4719 165903.5585 118930.5033 1.297936635 1.55319397 1.781353548 1.137418078 1.504037528 1.357285764 1.12256739 1.135456996 1.394962217 1 16.85975926 -6.344340094 0.853532247 1.154595289 1.505923346 0.34728263 0.183638225 0.704873462 1.096925347 0.123054943 0.106043953 4.53E-07 6.344340094 0.351328056 S(ph)WSTAT(ph)SPLGGERPFR ddPTM_HeLa_A485_30min_R1 1 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(1)WS(0.061)T(0.029)AT(0.55)S(0.359)PLGGERPFR 120.31 6.21E-06 0 486660 579790 471270 416120 619440 459860 561540 578400 452360 503600 TRUE FALSE FALSE 594915.838 647591.397 645612.3842 438851.5819 557766.3786 483937.5585 441562.3916 436546.4931 543144.5027 378061.7881 1.573594203 1.712924758 1.70769013 1.160793277 1.475331272 1.280048854 1.167963559 1.154696155 1.436655382 1 18.52826251 -5.256773305 24.99887489 1.254354386 1.66955523 0.670281608 0.136423367 232.2957724 1244539.603 0.036564593 0.060756202 5.54E-06 5.256773305 0.415200845 S(ph)WSTATS(ph)PLGGERPFR ddPTM_HeLa_A485_30min_R1 2 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(1)WS(0.002)T(0.001)AT(0.034)S(0.963)PLGGERPFR;S(1)WSTAT(0.117)S(0.882)PLGGERPFR ; 116.21 0.00012786 774701000 443660 544540 531440 468070 624720 522130 580020 566020 467390 555220 TRUE FALSE FALSE 542350.6364 608219.2161 728041.7711 493639.4789 562520.6833 549467.9194 456093.9887 427202.7075 561190.8858 416813.8721 1.301181829 1.45921059 1.74668316 1.184316339 1.349572845 1.318257276 1.094238986 1.024924399 1.346382459 1 18.66904377 -6.165572745 0.965765354 1.11529328 1.472258722 0.430840301 0.159705857 0.528118135 1.056217521 0.090648799 0.091272461 6.83E-07 6.165572745 0.356965441 S(ph)WSTATS(ph)PLGGERPFR ddPTM_HeLa_A486_30min_R1 4 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.955)WS(0.075)T(0.145)AT(0.104)S(0.721)PLGGERPFR;S(0.856)WS(0.062)T(0.082)AT(0.014)S(0.986)PLGGERPFR;S(0.997)WS(0.021)T(0.004)AT(0.01)S(0.967)PLGGERPFR;S(1)WS(0.092)T(0.075)AT(0.062)S(0.772)PLGGERPFR ;;; 145.77 8.25E-08 1513172000 1066971 1154694 848818 354781 1068201 958747 1017233 1020694 881515 1042791 TRUE FALSE FALSE 992181.8427 1063191.842 1177503.062 825948.0976 934217.27 840466.543 762710.5442 788304.2578 957925.43 781669.3462 1.269311439 1.360155477 1.506395342 1.056646396 1.19515659 1.075220037 0.975745752 1.008488131 1.225486754 1 19.57619894 -5.274791593 24.74224241 1.077701713 1.376774223 0.690183895 0.092700989 374.6825483 694302.6396 0.026705424 0.039876087 5.31E-06 5.274791593 0.299072511 S(ph)WSTATSPLGGERPFR ddPTM_HeLa_A485_30min_R1 4 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.995)WS(0.003)T(0.001)ATSPLGGERPFR;S(0.993)WS(0.007)TATSPLGGERPFR;S(0.998)WS(0.002)TATSPLGGERPFR;S(0.851)WS(0.147)T(0.002)ATSPLGGERPFR ;;; 245.67 4.99E-42 3118330000 341331 367271 319533 399496 429105 357876 527761 507406 336255 549445 TRUE FALSE FALSE 417258.9034 410220.1486 437741.5536 421319.4549 386381.7995 376613.834 415000.5509 382963.8829 403738.2942 412478.4733 1.011589526 0.994524988 1.061247027 1.021433801 0.936732035 0.913050882 1.006114447 0.928445744 0.978810581 1 18.6539593 -5.749486339 24.74787287 0.956853609 1.023011314 0.46738803 0.032104985 166.7136849 345166.4775 0.009373622 0.012002243 1.78E-06 5.749486339 0.066157705 S(ph)WSTATSPLGGERPFR ddPTM_HeLa_A486_30min_R1 4 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.849)WS(0.139)T(0.006)AT(0.006)SPLGGERPFR;S(0.695)WS(0.2)T(0.059)AT(0.021)S(0.024)PLGGERPFR;S(0.863)WS(0.136)T(0.001)ATSPLGGERPFR;S(0.985)WS(0.015)TATSPLGGERPFR ;;; 190.55 2.37E-18 2931590000 249977 229489 173126 89469 243458 215769 248925 256575 180694 279078 TRUE FALSE FALSE 232454.9032 211303.4559 240165.0237 208288.3535 212921.2275 189149.6146 186641.3321 198158.4735 196356.7014 209195.0523 1.111187385 1.010078649 1.148043517 0.995665773 1.017811966 0.904178242 0.89218808 0.947242639 0.938629758 1 17.67448921 -5.798341894 1.728187078 0.932263907 1.079267645 0.630412559 0.047849587 0.216773342 1.338858607 0.016506216 0.021327031 1.59E-06 5.798341894 0.147003737 S(ph)WTS(ph)PK ddPTM_HeLa_A486_30min_R1 3 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(1)WTS(1)PK;S(1)WT(0.058)S(0.942)PK;S(1)WT(0.001)S(0.999)PK ;; 111.06 0.018282 2266560000 4669110 4214900 1324400 2246330 2082560 4004100 4850250 3904820 2754610 9003700 TRUE FALSE FALSE 4341829.5 3880895.974 1837243.149 5229569.763 1821345.906 3510114.853 3636666.149 3015777.728 2993381.813 6749114.916 0.643318354 0.575022951 0.272219865 0.774852678 0.269864409 0.520085211 0.53883601 0.446840477 0.443522128 1 22.68626689 -10.25063126 3.4762061 1.001248472 0.495629642 0.513559824 0.14646606 62392127.55 97845843.78 836875.3608 0.037958623 5.62E-11 10.25063126 -0.50561883 S(ph)WTSPK ddPTM_HeLa_A485_30min_R1 4 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.975)WT(0.024)S(0.001)PK;S(0.999)WT(0.001)S(0.001)PK;S(0.994)WT(0.005)S(0.001)PK;S(0.996)WT(0.003)S(0.001)PK ;;; 87.181 0.01687 10616000000 3787540 3754600 2744920 4276820 3646400 3809950 4864030 4695550 2895760 5217280 TRUE FALSE FALSE 4630065.206 4193667.809 3760380.134 4510451.847 3283351.613 4009433.091 3824790.255 3543959 3476912.471 3916708.113 1.182131799 1.070712366 0.960086896 1.151592541 0.838293669 1.023674212 0.976531859 0.904831021 0.887712939 1 21.90121019 -1 0.415422438 0.936566611 5.298697306 0.44810733 0.078504438 68.23341049 0.883536485 0.05213939 246.4574282 0.1 1 4.362130695 S(ph)WTSPK ddPTM_HeLa_A486_30min_R1 5 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.985)WT(0.004)S(0.011)PK;S(0.995)WT(0.004)S(0.001)PK;S(0.999)WT(0.001)SPK;S(0.984)WT(0.016)SPK;S(1)WTSPK ;;;; 106.38 0.0099902 12413510000 4927070 4882550 2359140 1629700 3634900 4766250 5134020 4549770 3725170 6505800 TRUE FALSE FALSE 4581707.836 4495638.956 3272662.188 3794023.96 3178976.948 4178238.535 3849433.894 3513886.692 4048070.735 4876705.334 0.939508853 0.921859872 0.671080568 0.777989175 0.651869803 0.856774861 0.789351341 0.720545215 0.830083111 1 22.21747537 -9.940513483 13.93303877 0.999989808 0.79019587 0.308173691 0.091638975 0 0 0.091636245 0.022225054 1.15E-10 9.940513483 -0.209793938 S(ph)Y(ph)SPAHNR ddPTM_HeLa_A485_30min_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.892)Y(0.592)S(0.516)PAHNR 48.741 0.033879 854370000 59498 102600 91137 67184 87852 91633 90995 94068 73958 92076 TRUE FALSE FALSE 72733.12483 114598.1775 124852.3688 70854.0918 79105.14641 96430.76219 71553.17489 70997.67551 88800.69222 69123.14773 1.0522253 1.657884244 1.80623095 1.025041453 1.144408914 1.39505745 1.035155042 1.027118669 1.284673733 1 16.0768813 -5.278374644 24.82888428 1.139004402 1.520690601 0.389129013 0.214997683 729.3448228 1069294.678 0.060905087 0.090604534 5.27E-06 5.278374644 0.381686199 S(ph)Y(ph)TPEYRR ddPTM_HeLa_A485_30min_R1 1 SYTPEYRR 8 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.982)Y(0.638)T(0.379)PEY(0.001)RR 64.82 0.011458 324720000 209450 309900 183240 195810 229310 261870 325620 325820 168530 248370 TRUE FALSE FALSE 256041.4299 346140.1092 251028.1013 206506.6045 206479.0912 275581.1083 256048.6269 245912.1341 202352.4252 186455.9299 1.373200788 1.856417811 1.346313316 1.10753573 1.107388171 1.477995945 1.373239387 1.318875373 1.085256045 1 17.50847515 -1 0.129462695 0.965675257 2.946881738 0.336925789 0.19347831 108.4602455 0.953094808 1.143523829 39.19946511 0.1 1 1.981206481 S(ph)YDLTPVDKFWQK ddPTM_HeLa_A485_30min_R1 1 SYDLTPVDKFWQK 13 1 Q8WVM8-2;Q8WVM8-3;Q8WVM8 Q8WVM8-2 SCFD1 Sec1 family domain-containing protein 1 1 0 S(0.976)Y(0.024)DLT(0.001)PVDKFWQK 50.155 0.011459 0 27784 27589 20120 33775 44155 32864 47063 59345 30020 40038 TRUE FALSE FALSE 33964.45495 30815.29356 27563.22526 35620.04273 39758.77316 34584.70822 37007.60558 44790.5457 36044.73864 30057.26344 1.129991591 1.025219532 0.917023777 1.185072713 1.322767565 1.150627311 1.231236691 1.490173774 1.199202273 1 14.87542605 -5.455987208 5.863725791 1.253026842 1.025862334 0.343002632 0.12720178 0.225982824 14.83800525 0.035743412 0.052846142 3.50E-06 5.455987208 -0.227164508 S(ph)YDNLTTACDNTVPLASR ddPTM_HeLa_A485_30min_R1 2 SYDNLTTACDNTVPLASR 18 0 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 S(0.999)Y(0.001)DNLTTACDNTVPLASR;S(1)YDNLTTACDNTVPLASR ; 229.48 7.34E-35 492184000 123269 129926 133984 148540 158759 120445 172485 137206 100548 194939 TRUE FALSE FALSE 150689.7638 145119.7155 183550.2571 156654.3641 142952.3965 126751.314 135632.1707 103556.0134 120727.0613 146344.2949 1.029693463 0.991632203 1.254235823 1.070450776 0.976822476 0.866117221 0.926801901 0.707619067 0.824952291 1 17.15900698 -6.064890529 1.973217351 0.844884508 1.092790759 0.542945297 0.095161393 0.249154048 1.933498394 0.036719471 0.038548332 8.61E-07 6.064890529 0.247906251 S(ph)YDSSMESR ddPTM_HeLa_A486_30min_R1 1 SYDSSMESR 9 0 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 S(0.991)YDS(0.007)S(0.002)MESR 82.494 0.0045672 0 155690 135470 139950 29197 181780 124110 100600 135100 122290 132860 TRUE FALSE FALSE 144776.935 124734.8638 194142.388 67972.09153 158979.4574 108798.5701 75428.81596 104340.6792 132890.1957 99590.99123 1.453715172 1.252471356 1.949397085 0.682512451 1.596323678 1.092453933 0.757385935 1.047691944 1.334359604 1 16.60372762 -5.263472201 24.99992889 1.084418267 1.521922202 0.35685057 0.293517808 216.2990404 2660086.517 0.080832351 0.126965917 5.45E-06 5.263472201 0.437503935 S(ph)YDVPPPPMEPDHPFYSNISK ddPTM_HeLa_A485_30min_R1 11 SYDVPPPPMEPDHPFYSNISK 21 0 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 0 S(0.983)Y(0.017)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(0.998)Y(0.002)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK ;;;;;;;;;; 307.08 2.71E-88 20514770000 6030721 6093105 4744242 6943895 8449292 7046284 9712015 10082865 5929992 9516605 TRUE FALSE FALSE 7372234.081 6805640.627 6499334.54 7323222.401 7608050.821 7415216.535 7636963.655 7610026.549 7120087.001 7144290.514 1.031905697 0.952598528 0.90972428 1.025045438 1.064913417 1.037922033 1.068960401 1.065189963 0.996612188 1 22.76835932 -5.456638856 7.843639276 1.043784445 0.963777128 0.449984325 0.036613902 0.257118812 27.65317517 0.010280494 0.015222001 3.49E-06 5.456638856 -0.080007317 S(ph)YDVPPPPMEPDHPFYSNISK ddPTM_HeLa_A486_30min_R1 14 SYDVPPPPMEPDHPFYSNISK 21 0 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 0 S(1)YDVPPPPMEPDHPFYSNISK;S(0.999)Y(0.001)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(0.944)Y(0.056)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(0.997)Y(0.003)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(0.863)Y(0.137)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK ;;;;;;;;;;;;; 255.12 6.81E-59 23908970000 8074326 8503033 5223472 2671716 9119762 8925870 10867790 10766430 7035213 9793008 TRUE FALSE FALSE 7508357.443 7829221.698 7246140.248 6219889.869 7975876.412 7824686.911 8148553.994 8315148.919 7645030.927 7340775.055 1.022828977 1.066538838 0.987108336 0.84730697 1.086516935 1.065921085 1.110040007 1.132734467 1.041447377 1 22.80750096 S(ph)YEDMIGEEVPSDQYYWAPLAQHER ddPTM_HeLa_A485_30min_R1 1 SYEDMIGEEVPSDQYYWAPLAQHER 25 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 S(0.723)Y(0.277)EDMIGEEVPSDQYYWAPLAQHER 67.283 0.008413 52250000 24578 20264 23584 34351 28451 25055 30666 22086 23557 35010 TRUE FALSE FALSE 30045.29131 22633.69853 32308.70301 36227.50815 25618.31854 26366.84106 24113.95858 16669.37387 28284.67382 26282.65131 1.143160595 0.861164966 1.229278684 1.378381036 0.974723525 1.003203244 0.91748577 0.634234867 1.076172776 1 14.6818232 -6.308503842 2.027133461 0.884133877 1.133092755 0.27131484 0.165923324 0.432679424 3.493985857 0.069946653 0.062185875 4.91E-07 6.308503842 0.248958878 S(ph)YELPDGQVITIGNER ddPTM_HeLa_A485_30min_R1 1 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63261;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 S(1)YELPDGQVITIGNER 184.01 9.89E-18 137740000 114540 147980 114580 144880 117080 131560 162450 158060 123080 186690 TRUE FALSE FALSE 140019.0278 165284.9737 156967.9101 152794.4275 105423.1041 138448.2782 127741.2304 119295.5372 147781.027 140151.6188 0.999053946 1.179329752 1.119986422 1.090208082 0.752207538 0.987846444 0.911450267 0.851189149 1.054436819 1 17.09662888 -5.579228037 17.77343112 0.921094521 1.107052968 0.469301518 0.088892995 4.455482117 1404.669551 0.024952932 0.032214089 2.63E-06 5.579228037 0.185958447 S(ph)YELPDGQVITIGNER ddPTM_HeLa_A486_30min_R1 1 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63261;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 S(1)YELPDGQVITIGNER 207.79 1.99E-25 231830000 164060 179570 96524 53941 133360 159190 159700 164070 140900 182660 TRUE FALSE FALSE 152560.2412 165340.2192 133900.6778 125577.374 116632.7453 139550.7563 119741.3709 126714.8426 153113.3254 136920.7471 1.114222968 1.207561474 0.977942939 0.917153731 0.851826679 1.01920826 0.874530511 0.925461227 1.118262416 1 17.06298154 -4.828250144 5.952472536 0.949976493 1.16024008 0.526114694 0.075749469 0.131556932 8.470352374 0.019644768 0.042534521 1.49E-05 4.828250144 0.210263587 S(ph)YLELKQEQER ddPTM_HeLa_A485_30min_R1 1 SYLELKQEQER 11 1 Q9UIX4 Q9UIX4 KCNG1 Potassium voltage-gated channel subfamily G member 1 1 0 S(0.551)Y(0.449)LELKQEQER 59.57 0.018327 440680000 109230 129840 119460 91506 148240 150230 158560 178230 127560 126180 TRUE FALSE FALSE 133527.8367 145023.6585 163653.2251 96504.74107 133480.7051 158095.8105 124682.3607 134518.813 153160.122 94725.64817 1.409627057 1.530986183 1.727654846 1.018781533 1.409129498 1.668986315 1.31624711 1.420088599 1.616881224 1 16.53146749 -10.42266544 5.224838872 0.999562593 1.454324153 0.339126676 0.191589792 0.00097782 0.000108047 0.185816531 0.045025042 3.78E-11 10.42266544 0.45476156 S(ph)YPGHVQPATAR ddPTM_HeLa_A486_30min_R1 1 SYPGHVQPATAR 12 0 H0YDK4;Q86VS8 H0YDK4 HOOK3 Protein Hook homolog 3 1 0 S(1)YPGHVQPATAR 92.8 0.0013685 256660000 240390 248460 185850 89605 281730 233180 267010 261280 214110 272760 TRUE FALSE FALSE 223539.9024 228771.1247 257816.0972 208604.9684 246392.7964 204412.6224 200201.2739 201792.2477 232669.2272 204459.1206 1.093323211 1.118908875 1.260966478 1.020277148 1.205095648 0.999772579 0.97917507 0.986956449 1.137974312 1 17.6414529 -6.27635319 24.86139519 1.017360415 1.138659255 0.398103448 0.073057213 775.5544144 1292849.135 0.025048475 0.022177105 5.29E-07 6.27635319 0.121298841 S(ph)YRS(ph)S(ph)RSPR ddPTM_HeLa_A485_30min_R1 1 SYRSSRSPR 9 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(1)Y(0.005)RS(0.955)S(0.869)RS(0.172)PR 100.93 0.0018414 443050000 642600 1049000 783240 736360 881760 970680 934610 1260300 866570 813830 TRUE FALSE FALSE 785544.1531 1171671.425 1072993.069 776585.4822 793968.8784 1021503.304 734922.9384 951209.4489 1040482.65 610957.1584 1.285759799 1.917763641 1.75624928 1.271096462 1.299549187 1.671972068 1.202904211 1.556916775 1.703037007 1 19.22071169 -10.96615764 2.844306567 0.58357338 1.519770497 0.310106981 0.231938351 5886736.647 11709390.39 16181405.19 0.059360065 1.08E-11 10.96615764 0.936197117 S(ph)YRS(ph)SRS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SYRSSRSPR 9 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(1)YRS(0.868)S(0.557)RS(0.575)PR 90.793 0.0035581 745090000 222090 385040 302040 262840 322340 339250 371580 466920 310850 325250 TRUE FALSE FALSE 271493.1543 430067.0786 413777.1649 277198.2837 290246.6978 357012.6054 292188.8975 352407.1379 373234.7437 244171.1608 1.11189689 1.761334456 1.694619314 1.135262177 1.188701798 1.462140755 1.196656053 1.443279119 1.528578324 1 17.89753329 -5.25937719 24.98525776 1.298109685 1.546488637 0.195145601 0.22264753 294.7570536 3571220.12 0.060721524 0.09881536 5.50E-06 5.25937719 0.248378952 S(ph)YRS(ph)SRS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SYRSSRSPR 9 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.999)Y(0.001)RS(0.743)S(0.362)RS(0.896)PR 92.039 0.0033471 553930000 729830 604070 503220 362790 575780 731130 591890 616270 570700 769680 TRUE FALSE FALSE 678672.6858 556201.2932 698080.2607 844593.4544 503560.3035 640930.6142 443792.8616 475958.7741 620168.7355 576947.1182 1.17631697 0.964042068 1.209955364 1.463900985 0.872801488 1.110900105 0.769208906 0.824960831 1.074914348 1 19.13807956 -5.805546495 24.9999973 0.933171167 1.186904571 0.418794494 0.150140259 140.4640348 79614.49875 0.048290148 0.054756149 1.56E-06 5.805546495 0.253733404 S(ph)YS(ph)PAHNR ddPTM_HeLa_A485_30min_R1 6 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.999)Y(0.001)S(1)PAHNR;S(0.998)Y(0.012)S(0.99)PAHNR;S(0.998)Y(0.008)S(0.994)PAHNR;S(0.999)Y(0.005)S(0.996)PAHNR;S(1)Y(0.003)S(0.998)PAHNR;S(0.999)Y(0.002)S(0.999)PAHNR ;;;;; 107.06 0.0028338 30622870000 5252120 6460580 4959160 5289260 5573590 5577850 6956710 6616220 4789540 5955720 TRUE FALSE FALSE 6420435.974 7216088.631 6793759.652 5578198.881 5018663.81 5869897.601 5470352.077 4993581.671 5750756.746 4471068.611 1.435995851 1.613951666 1.519493491 1.247620953 1.122475239 1.31286234 1.223499918 1.116865364 1.286215276 1 22.09218825 -2.958331692 0.214961126 1.033426463 2.454225825 0.645786316 0.107751304 14.41002475 0.373326389 0.198405798 5.963289238 0.001100698 2.958331692 1.420799361 S(ph)YS(ph)PAHNR ddPTM_HeLa_A486_30min_R1 4 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)Y(0.001)S(0.999)PAHNR;S(0.997)Y(0.007)S(0.996)PAHNR;S(0.835)Y(0.352)S(0.813)PAHNR;S(0.996)Y(0.209)S(0.796)PAHNR ;;; 119.6 0.0013857 27175400000 8907158 9172100 5095109 2536182 6351406 7203595 7707207 6848661 6754397 9826194 TRUE FALSE FALSE 8282812.221 8445269.392 7068071.657 5904359.868 5554753.435 6314888.69 5778782.29 5289370.396 7339873.57 7365651.065 1.124518681 1.146574732 0.959599035 0.801607328 0.754142897 0.857342906 0.784558247 0.718113083 0.99650031 1 22.81238162 -4.94883112 2.921222251 0.827887663 1.138313455 0.620276567 0.089555885 0.147395831 2.542976108 0.023708955 0.05629026 1.13E-05 4.94883112 0.310425793 S(ph)YS(ph)PGRR ddPTM_HeLa_A485_30min_R1 1 SYSPGRR 7 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 2 0 S(0.995)Y(0.036)S(0.97)PGRR 61.48 0.0055012 0 146110 231120 162930 159810 200440 135660 192560 190630 143510 209000 TRUE FALSE FALSE 178611.6654 258147.4735 223204.5871 168540.0156 180483.4898 142762.9478 151417.9829 143877.6936 172311.1406 156900.1464 1.13837794 1.64529785 1.42259005 1.074186478 1.150307976 0.909896843 0.965059539 0.917001653 1.098221669 1 17.25948717 -5.35752946 2.743438057 0.998935247 1.431563747 0.632515793 0.134684405 0.163150367 2.383697263 0.039414254 0.065013424 4.39E-06 5.35752946 0.4326285 S(ph)YS(ph)PRR ddPTM_HeLa_A485_30min_R1 1 SYSPRR 6 1 P62995;P62995-3;H7BXF3;H7C2L4;M0R088;Q8IYB3;Q13595;Q13595-3;Q13595-4;J3KTL2;Q07955;J3KSR8 P62995;M0R088;Q8IYB3;Q13595;J3KTL2 TRA2B;SRRM1;TRA2A;SRSF1 Transformer-2 protein homolog beta;Serine/arginine repetitive matrix protein 1;Transformer-2 protein homolog alpha;Serine/arginine-rich splicing factor 1 2 0 S(0.979)Y(0.042)S(0.979)PRR 43.246 0.03314 286390000 91800 110010 98091 77198 102520 95261 119490 129300 83107 97958 TRUE FALSE FALSE 112220.5933 122874.7125 134378.9428 81415.13126 92312.74883 100248.7187 93959.98536 97588.97227 99785.8126 73538.87338 1.526003706 1.670881085 1.827318486 1.107103325 1.255291856 1.363207159 1.27769139 1.327039262 1.356912447 1 16.16621945 -1 0.147739007 1.014604588 3.432172936 0.473336141 0.170774773 66.22292444 0.645070802 0.675477789 34.20077828 0.1 1 2.417568348 S(ph)YS(ph)REHEGR ddPTM_HeLa_A485_30min_R1 2 SYSREHEGR 9 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 S(0.965)Y(0.231)S(0.803)REHEGR;S(0.929)Y(0.357)S(0.714)REHEGR ; 67.118 0.019003 1084940000 508290 580600 672670 902790 1235600 702950 1071500 1165750 726380 1222620 TRUE FALSE FALSE 621357.3569 648496.1195 921518.6251 952107.1317 1112579.326 739755.375 842565.2716 879847.9847 872157.8032 917843.3347 0.676975398 0.706543366 1.004004268 1.037330769 1.212166917 0.805971288 0.917983756 0.958603665 0.950225131 1 19.8078884 -4.748789599 8.622902166 0.985487627 0.690490034 0.595931856 0.096849046 0.112138045 54.22697603 0.026477098 0.065530049 1.78E-05 4.748789599 -0.294997593 S(ph)YS(ph)REHEGR ddPTM_HeLa_A486_30min_R1 3 SYSREHEGR 9 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 S(0.97)Y(0.065)S(0.965)REHEGR;S(0.983)Y(0.021)S(0.996)REHEGR;S(0.96)Y(0.176)S(0.864)REHEGR ;; 88.282 0.0042345 1927010000 1390070 1674650 1578030 1109450 2581820 2118510 2541150 2697350 1681720 2096060 TRUE FALSE FALSE 1292633.271 1541944.635 2189085.477 2582855.668 2257984.061 1857149.776 1905327.392 2083222.288 1827492.844 1571192.933 0.822708176 0.981384655 1.393263317 1.643881928 1.437114446 1.181999827 1.212662909 1.325885729 1.163124404 1 20.58342892 -4.632810415 4.333193742 1.316242198 0.857587996 0.470930562 0.168369334 0.172793999 5.538477737 0.045951191 0.135062371 2.33E-05 4.632810415 -0.458654203 S(ph)YS(ph)SER ddPTM_HeLa_A485_30min_R1 1 SYSSER 6 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 2 0 S(0.998)Y(0.009)S(0.619)S(0.375)ER 95.358 0.028835 224400000 490880 556630 425590 651540 535590 522330 682430 694790 492520 703140 TRUE FALSE FALSE 600074.5625 621723.0365 583033.4513 687131.9804 482264.779 549678.3911 536623.2556 524391.6631 591364.2463 527860.1383 1.136805981 1.177817742 1.104522598 1.301731141 0.913622272 1.041333397 1.01660121 0.993429178 1.120304799 1 19.0097962 -5.767016437 24.99999998 1.015361828 1.174640909 0.593186116 0.06728091 96.09237563 430748.1213 0.019896449 0.023196673 1.71E-06 5.767016437 0.159279081 S(ph)YS(ph)SER ddPTM_HeLa_A486_30min_R1 2 SYSSER 6 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 2 0 S(0.989)Y(0.021)S(0.938)S(0.052)ER;S(1)Y(0.001)S(0.632)S(0.367)ER ; 96.668 0.027827 414980000 1184350 1021040 703560 445600 839660 1183080 1173220 1048110 1040870 1584130 TRUE FALSE FALSE 1101333.181 940129.0718 975997.274 1037379.319 734342.0133 1037123.618 879667.9469 809478.2331 1131093.45 1187453.537 0.927474757 0.791718617 0.8219246 0.873616766 0.618417471 0.873401431 0.740801993 0.681692553 0.952537017 1 20.17943963 -7.913644721 6.548724179 0.998918106 0.790638175 0.418503803 0.088080702 0.180077553 10.24739581 0.083013588 0.021523327 1.22E-08 7.913644721 -0.208279932 S(ph)YSDMKR ddPTM_HeLa_A485_30min_R1 1 SYSDMKR 7 1 Q13247;Q13247-3;A0A590UJP7;A0A590UJK4;A0A590UK01;A0A590UK80 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.87)Y(0.016)S(0.115)DMKR 57.59 0.024485 115370000 162950 165030 164350 211770 250240 202650 278710 306960 194660 275200 TRUE FALSE FALSE 199197.6653 184328.8229 225149.9042 223338.4589 225325.227 213260.4406 219161.3316 231677.5787 233726.4765 206597.7047 0.964181406 0.892211379 1.089798672 1.081030688 1.090647291 1.032249806 1.060812036 1.121394737 1.131312068 1 17.6564647 -4.767267797 24.99998719 1.078852531 0.928196377 0.683530373 0.040162634 66.63755059 285834.768 0.010417415 0.022652819 1.71E-05 4.767267797 -0.150656154 S(ph)YSHDVLPK ddPTM_HeLa_A486_30min_R1 2 SYSHDVLPK 9 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 S(0.499)Y(0.003)S(0.499)HDVLPK;S(0.498)Y(0.003)S(0.498)HDVLPK ; 68.132 0.011831 182059000 921890 978750 592420 178561 945070 1020360 1075770 1184330 846810 1007460 TRUE FALSE FALSE 857270.2716 901190.2855 821820.8896 415699.032 826530.5082 894478.3575 806600.9677 914683.9127 920212.1726 755185.4585 1.135178468 1.193336385 1.088237174 0.550459529 1.094473548 1.184448598 1.068083288 1.21120435 1.218524751 1 19.52647146 -5.987162653 24.99986325 1.144721911 0.989258906 0.133029989 0.17422532 488.388156 951097.3158 0.057691967 0.065379029 1.03E-06 5.987162653 -0.155463005 S(ph)YSPAHNR ddPTM_HeLa_A485_30min_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.742)YS(0.258)PAHNR 94.692 0.002303 296760000 55912 78388 77133 52639 79526 64202 80561 84102 65204 67134 TRUE FALSE FALSE 68349.43151 87554.79472 105667.7065 55514.53528 71608.11221 67563.51744 63348.48423 63475.85263 78289.84471 50398.72931 1.356173706 1.737242107 2.096634338 1.101506646 1.420831699 1.34057978 1.25694606 1.259473274 1.5534091 1 15.62109974 -5.275993807 24.990461 1.294836272 1.730739288 0.46953662 0.220462969 685.4475479 1176935.924 0.061129003 0.091120415 5.30E-06 5.275993807 0.435903017 S(ph)YSPAHNR ddPTM_HeLa_A486_30min_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.546)Y(0.015)S(0.438)PAHNR 55.567 0.031758 14467000 13189 16454 15868 6130.8 21161 15170 13523 14972 12907 13580 TRUE FALSE FALSE 12264.51921 15150.12512 22012.51456 14272.81223 18506.79006 13298.47964 10139.40237 11563.20244 14025.78915 10179.47961 1.20482772 1.488300551 2.162440066 1.402116098 1.818048738 1.306400734 0.996062938 1.13593257 1.377849329 1 13.31337619 -6.46550906 5.278126506 1.13903684 1.624453367 0.444135285 0.258588486 0.204391171 12.06774018 0.09510544 0.081799914 3.42E-07 6.46550906 0.485416527 S(ph)YSPDGKESPSDKK ddPTM_HeLa_A485_30min_R1 2 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.531)Y(0.003)S(0.465)PDGKESPSDKK;S(0.452)YS(0.452)PDGKES(0.082)PS(0.014)DKK ; 69.148 0.0048936 53883000000 560630 446190 213610 994750 695350 689590 1344280 1327040 423630 1334810 TRUE FALSE FALSE 685340.2093 498368.0392 292633.2281 1049090.674 626118.5125 725695.8661 1057063.596 1001581.359 508648.6552 1002066.432 0.683926921 0.497340319 0.292029768 1.046927269 0.624827349 0.724199357 1.05488375 0.999515927 0.507599735 1 19.93454673 -5.26120848 24.99999925 0.844886938 0.491723137 0.413011151 0.196594732 21.06490568 2280631.412 0.054608228 0.087488195 5.48E-06 5.26120848 -0.353163801 S(ph)YSPDGKESPSDKK ddPTM_HeLa_A486_30min_R1 1 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.547)Y(0.001)S(0.453)PDGKESPSDKK 86.455 0.00073875 2086900000 556530 420500 196770 451570 455200 637570 1050200 963320 362400 1202900 TRUE FALSE FALSE 517520.1209 387178.0486 272964.6137 1051277.781 398104.5714 558913.0957 787428.8521 743993.0651 393813.1238 901686.0104 0.573947156 0.42939343 0.302726903 1.165902286 0.44151131 0.619853352 0.873284983 0.82511324 0.43675195 1 19.78226561 -6.052427728 0.088021341 1.286877238 8.67E-15 0.188573245 0.243587007 60.26556803 1.904347953 10.00988137 17.21947567 8.86E-07 6.052427728 -1.286877238 S(ph)YSPGR ddPTM_HeLa_A486_30min_R1 1 SYSPGR 6 0 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 1 0 S(0.956)Y(0.002)S(0.042)PGR 63.48 0.036787 125040000 211200 210730 224110 65990 246600 253450 247040 230440 238690 234310 TRUE FALSE FALSE 196395.9706 194030.9873 310891.3939 153628.0549 215669.1285 222181.9159 185227.9791 177973.8425 259379.8414 175637.2509 1.118190871 1.104725714 1.770076634 0.874689476 1.227923618 1.265004518 1.054605319 1.013303508 1.476792879 1 17.42223933 S(ph)YSPSFQR ddPTM_HeLa_A486_30min_R1 1 SYSPSFQR 8 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.678)YS(0.219)PS(0.103)FQR 98.009 0.0025821 637550000 536500 545190 444140 166880 561530 608380 696650 681560 492460 594180 TRUE FALSE FALSE 498894.1205 501987.1589 616122.9025 388505.0736 491097.6713 533324.2612 522340.8016 526383.6664 535146.8293 445393.4605 1.120119994 1.127064502 1.383322741 0.872273861 1.102615361 1.197422747 1.17276262 1.181839683 1.201514788 1 18.76472085 -6.247930068 23.4368757 1.163451368 1.122158365 0.008489629 0.126808246 1852.044329 3213050.918 0.042218418 0.041937769 5.65E-07 6.247930068 -0.041293003 S(ph)YSYPR ddPTM_HeLa_A486_30min_R1 1 SYSYPR 6 0 Q9H706-3;Q9H706-2;Q9H706 Q9H706-3 GAREM GRB2-associated and regulator of MAPK protein 1 0 S(0.506)Y(0.014)S(0.478)Y(0.002)PR 73.039 0.026458 226320000 218100 237370 210810 70784 285850 215640 239920 252330 209170 231010 TRUE FALSE FALSE 202812.3163 218559.9367 292441.2777 164788.7292 249996.0276 189036.5293 179889.4784 194879.9673 227301.024 173163.5924 1.171218 1.262158712 1.688815031 0.95163612 1.443698552 1.091664401 1.038841225 1.125409589 1.312637494 1 17.40177611 -6.287472581 24.18505728 1.116869276 1.303066078 0.195693463 0.192333133 889.2061584 826076.1164 0.066443412 0.058621607 5.16E-07 6.287472581 0.186196802 S(ph)YT(ph)PEYR ddPTM_HeLa_A485_30min_R1 1 SYTPEYR 7 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)Y(0.015)T(0.985)PEYR 98.033 0.012979 2190700000 3166000 2904100 2124500 3784000 2939100 2541500 3446400 2650500 2135900 4408300 TRUE FALSE FALSE 3870265.777 3243709.233 2910440.958 3990710.338 2646472.884 2674569.01 2710048.486 2000460.719 2564555.538 3309391.939 1.169479424 0.980152636 0.879448857 1.205874194 0.799685541 0.808175357 0.818896201 0.604479843 0.774932551 1 21.65813473 -5.85859183 8.564625576 0.780943352 1.039885985 0.501044525 0.124549784 0.217258 17.1148081 0.03818419 0.043367354 1.38E-06 5.85859183 0.258942633 S(ph)YT(ph)PEYR ddPTM_HeLa_A486_30min_R1 2 SYTPEYR 7 0 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.998)Y(0.212)T(0.79)PEYR;S(0.998)Y(0.354)T(0.648)PEYR ; 94.692 0.014947 6281000000 9458700 9126300 4011400 3219500 4974000 8139200 9012800 7470300 6721100 12811500 TRUE FALSE FALSE 8795693.975 8403098.751 5564721.509 7495158.705 4350114.539 7135068.257 6757702.112 5769475.766 7303690.36 9603417.011 0.915892121 0.875011336 0.579452241 0.7804679 0.4529757 0.742971824 0.703676838 0.60077322 0.760530377 1 23.19511639 -9.65467606 14.62566897 0.999999998 0.705017169 0.298531142 0.131811 0 0 0.129310883 0.031362496 2.21E-10 9.65467606 -0.294982829 S(ph)YTLVVAK ddPTM_HeLa_A485_30min_R1 6 SYTLVVAK 8 0 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(0.996)YT(0.004)LVVAK;S(0.998)YT(0.002)LVVAK;S(0.995)YT(0.005)LVVAK;S(0.995)YT(0.005)LVVAK;S(0.995)YT(0.005)LVVAK;S(0.996)YT(0.004)LVVAK ;;;;; 199.46 2.02E-06 7768250000 7767750 6525210 5915270 8917970 8291560 6150460 8399340 8010280 5878190 10290400 TRUE FALSE FALSE 9495659.189 7288276.548 8103574.528 9405136.12 7466023.173 6472488.575 6604752.393 6045746.27 7057888.815 7725192.661 1.22918089 0.94344269 1.04898025 1.217462985 0.966451388 0.837841703 0.854962806 0.782601358 0.913619779 1 22.88113948 -5.98828813 5.968422341 0.866265238 1.094354258 0.577464724 0.092926812 0.114681156 15.32012534 0.029175149 0.032076768 1.03E-06 5.98828813 0.228089021 S(ph)YTLVVAK ddPTM_HeLa_A486_30min_R1 6 SYTLVVAK 8 0 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;A0A2R8Y5B3;E9PII3;E9PQN0;E9PJP4;E9PQD2;E9PIG0;E9PRG1 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(1)YTLVVAK;S(1)YTLVVAK;S(0.996)YT(0.004)LVVAK;S(0.995)YT(0.005)LVVAK;S(0.994)YT(0.006)LVVAK;S(0.991)YT(0.009)LVVAK ;;;;; 195.57 2.80E-06 8738180000 7439970 7432120 4191980 2951660 7037770 8339950 9256060 9712310 7238940 8497330 TRUE FALSE FALSE 6918466.523 6843171.744 5815226.921 6871613.649 6155027.262 7311051.763 6940095.887 7501029.031 7866417.148 6369543.26 1.086179376 1.074358312 0.912973927 1.078823609 0.966321604 1.147814131 1.089575124 1.177640017 1.235004902 1 22.60275849 -6.277167513 24.45788947 1.138582366 1.023451463 0.326154748 0.075879046 691.321199 1075029.64 0.026190661 0.02317943 5.28E-07 6.277167513 -0.115130902 S(ph)YTSDLQK ddPTM_HeLa_A486_30min_R1 2 SYTSDLQK 8 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.999)YT(0.001)SDLQK;S(0.998)YT(0.001)SDLQK ; 128.91 0.00056753 1039490000 1913610 2733000 1484920 891190 2166620 2737200 2928800 3204800 2014500 2632700 TRUE FALSE FALSE 1779475.821 2516427.127 2059920.792 2074735.358 1894862.317 2399512.094 2195983.262 2475137 2189118.482 1973454.784 0.901705899 1.27513797 1.043814537 1.051321457 0.960175187 1.215894133 1.11276087 1.254215207 1.10928231 1 20.91229203 -6.275521416 24.98232694 1.152714597 1.059263278 0.136067177 0.110745133 1580.082757 2803148.124 0.037498497 0.033228998 5.30E-07 6.275521416 -0.093451319 S(ph)YTTPKK ddPTM_HeLa_A486_30min_R1 1 SYTTPKK 7 1 P62979;J3QTR3 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 1 0 S(0.654)Y(0.007)T(0.31)T(0.029)PKK 61.679 0.019988 761680000 2239900 1529200 926870 1252000 1625100 2618300 3030600 2411300 1555300 3222100 TRUE FALSE FALSE 2082894.577 1408020.623 1285778.886 2914719.273 1421264.805 2295280.767 2272311.826 1862299.628 1690114.656 2415265.188 0.862387529 0.582967299 0.53235516 1.206790578 0.58845083 0.950322465 0.940812561 0.771053894 0.699763597 1 21.20375017 -5.160897926 20.12343483 0.86404142 0.651613111 0.235835925 0.18007606 12.37227182 2469.161569 0.047027981 0.08145541 6.90E-06 5.160897926 -0.212428309 S(ph)YVTTSTR ddPTM_HeLa_A485_30min_R1 5 SYVTTSTR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.985)YVT(0.015)TSTR;S(1)YVTTSTR;S(1)YVTTSTR;S(1)YVTTSTR;S(1)YVTTSTR ;;;; 125.83 0.00060627 2865530000 998284 1133990 1032500 1034367 1326350 1119150 1443790 1547710 891798 1165650 TRUE FALSE FALSE 1220348.832 1266600.266 1414464.716 1090871.85 1194293.937 1177746.963 1135312.472 1168131.696 1070773.679 875074.9072 1.394564993 1.44741925 1.616392727 1.246603966 1.364790519 1.345881311 1.297388901 1.334893374 1.223636594 1 19.73904699 -12.86094184 0.101468606 3.09E-12 1.649875343 0.69873729 0.083170989 76.49610542 0.67458501 17.29042655 1.475754135 1.38E-13 12.86094184 1.649875343 S(ph)YVTTSTR ddPTM_HeLa_A486_30min_R1 4 SYVTTSTR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.999)YVT(0.001)TSTR;S(1)YVTTSTR;S(0.998)YVT(0.002)TSTR;S(1)YVTTSTR ;;; 146.88 0.00030164 2937190000 1321370 1572770 1339170 587420 1812170 1479330 1693920 1788850 1262570 1446920 TRUE FALSE FALSE 1228748.787 1448137.977 1857732.488 1367543.447 1584870.741 1296825.305 1270083.3 1381567.905 1372010.584 1084601.814 1.132903127 1.33517938 1.712824434 1.260871436 1.461246625 1.195669497 1.171013438 1.27380195 1.264990125 1 20.04873406 -6.275715031 23.01026011 1.197577476 1.389886119 0.285000732 0.156575908 400.9869366 646328.6473 0.055496908 0.049236905 5.30E-07 6.275715031 0.192308643 SAAAGALGS(ph)PGLPLRK ddPTM_HeLa_A485_30min_R1 1 SAAAGALGSPGLPLRK 16 1 O75145-2;O75145;A0A0C4DGR8;A0A0C4DGR7 O75145-2 PPFIA3 Liprin-alpha-3 1 0 SAAAGALGS(1)PGLPLRK 56.081 0.021303 193820000 142680 194680 153150 157770 228290 203970 254990 274480 163280 217370 TRUE FALSE FALSE 174418.6738 217446.1325 209806.5581 166388.5756 205560.646 214649.5538 200509.3034 207163.3496 196048.7983 163183.6594 1.068848893 1.332523938 1.285708133 1.019639933 1.25968891 1.315386324 1.228733956 1.269510381 1.201399693 1 17.31613707 -8.043111476 20.9070364 0.999999998 1.226647279 0.319979013 0.096570384 1223.445045 593314.2084 0.092629899 0.023916937 9.06E-09 8.043111476 0.226647281 SAAAGALGS(ph)PGLPLRK ddPTM_HeLa_A486_30min_R1 1 SAAAGALGSPGLPLRK 16 1 O75145-2;O75145;A0A0C4DGR8;A0A0C4DGR7 O75145-2 PPFIA3 Liprin-alpha-3 1 0 SAAAGALGS(1)PGLPLRK 104.45 0.0001608 216770000 200430 202970 216750 66153 275820 177740 218190 251130 186160 246470 TRUE FALSE FALSE 186380.892 186885.918 300681.4048 154007.5272 241224.0837 155812.2459 163596.5542 193953.1811 202296.4987 184752.3077 1.00881496 1.01154849 1.627483891 0.833589193 1.305662087 0.843357508 0.885491262 1.049801128 1.094960605 1 17.49523286 -6.265082515 24.96560939 0.97225775 1.157439856 0.160241506 0.209080475 611.774951 4192347.584 0.071412662 0.065458089 5.43E-07 6.265082515 0.185182106 SAADS(ph)ISESVPVGPK ddPTM_HeLa_A485_30min_R1 1 SAADSISESVPVGPK 15 0 P45974;P45974-2 P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 1 0 SAADS(0.966)IS(0.034)ESVPVGPK 117.08 0.0001249 218810000 248290 190160 169110 336910 314490 230460 320730 343200 215140 423880 TRUE FALSE FALSE 303521.2539 212397.5578 231670.8263 355314.5402 283178.2714 242526.5292 252203.4154 259029.6619 258316.6246 318214.5169 0.953825919 0.667466588 0.728033493 1.116588092 0.8898974 0.762147911 0.792557856 0.814009569 0.811768825 1 18.27964013 -11.43485408 2.041659319 2.277112082 0.834693757 0.141499551 0.120015582 15817774.21 1450290.303 93116407.24 0.032169905 3.67E-12 11.43485408 -1.442418325 SAAEMYGSVTEHPS(ph)PSPLLSSSFDLDYDFQR ddPTM_HeLa_A485_30min_R1 3 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V575;G3V555 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 SAAEMYGSVT(0.002)EHPS(0.996)PS(0.002)PLLSSSFDLDYDFQR;SAAEMYGS(0.001)VT(0.001)EHPS(0.915)PS(0.083)PLLSSSFDLDYDFQR;SAAEMY(0.001)GS(0.001)VT(0.002)EHPS(0.707)PS(0.262)PLLS(0.008)S(0.009)S(0.009)FDLDY(0.001)DFQR ;; 148.12 8.01E-10 472970000 69481.2 97605 97256.9 70196.9 113204.1 89160.3 105904.4 99457.7 77620.1 94654.5 TRUE FALSE FALSE 84937.05323 109019.0557 133236.2745 74031.5789 101933.1023 93828.59544 83277.05978 75065.54313 93197.7421 71058.87514 1.195305345 1.534207451 1.875012435 1.041834377 1.434487981 1.320434573 1.171944527 1.056385187 1.311556676 1 16.11672723 -6.364304157 0.735000056 1.103278182 1.486659268 0.28087015 0.215726361 0.912485351 1.06039493 0.162445629 0.14526295 4.32E-07 6.364304157 0.383381087 SAAEMYGSVTEHPS(ph)PSPLLSSSFDLDYDFQR ddPTM_HeLa_A486_30min_R1 3 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V575;G3V555 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 SAAEMYGS(0.001)VT(0.001)EHPS(0.773)PS(0.205)PLLS(0.005)S(0.006)S(0.007)FDLDY(0.001)DFQR;SAAEMYGSVTEHPS(0.858)PS(0.142)PLLSSSFDLDYDFQR;SAAEMYGS(0.001)VT(0.001)EHPS(0.839)PS(0.155)PLLS(0.002)S(0.002)S(0.002)FDLDYDFQR ;; 180.83 6.18E-21 120116000 27994 32694 33403.6 11375.5 39023.9 32491.3 38409.8 32794.5 29863.2 30544.6 TRUE FALSE FALSE 26031.76516 30103.20837 46338.3685 26482.73889 34129.15858 28482.85375 28799.26178 25327.90825 32451.76622 22896.03335 1.136955243 1.314778325 2.023860107 1.156651831 1.490614468 1.244008223 1.257827561 1.106213808 1.417353204 1 14.48281006 -6.370508684 1.529422276 1.195078405 1.447563774 0.155661337 0.251930135 0.777564278 3.638007526 0.118547294 0.098711642 4.26E-07 6.370508684 0.252485369 SAAEMYGSVTEHPSPS(ph)PLLSSSFDLDYDFQR ddPTM_HeLa_A485_30min_R1 6 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V575;G3V555 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 SAAEMYGSVTEHPS(0.03)PS(0.967)PLLS(0.001)S(0.001)S(0.001)FDLDYDFQR;SAAEMYGSVTEHPS(0.004)PS(0.996)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.056)PS(0.944)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.193)PS(0.807)PLLSSSFDLDYDFQR;SAAEMYGSVTEHPS(0.043)PS(0.954)PLLS(0.001)S(0.001)S(0.001)FDLDYDFQR;SAAEMYGS(0.001)VT(0.001)EHPS(0.166)PS(0.831)PLLSSSFDLDYDFQR ;;;;; 140.34 1.81E-09 325723000 123913 197187 208592 91156.5 217183 152706 179678 180292 153408 151225 TRUE FALSE FALSE 151477.0194 220246.3044 285758.861 96136.14877 195559.4979 160701.45 141288.3275 136075.1043 184195.5785 113527.3906 1.334277293 1.940027893 2.517091775 0.846810169 1.722575468 1.415530201 1.24453074 1.198610341 1.622476986 1 16.79268089 -5.267798538 24.99991982 1.322202036 1.931421879 0.39283446 0.36193352 526.5142843 2069899.353 0.10010844 0.152628857 5.40E-06 5.267798538 0.609219843 SAAEMYGSVTEHPSPS(ph)PLLSSSFDLDYDFQR ddPTM_HeLa_A486_30min_R1 3 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 P07910;G3V2Q1;G3V576;G3V575;G3V555 P07910 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 SAAEMYGSVTEHPS(0.014)PS(0.985)PLLSS(0.001)SFDLDYDFQR;SAAEMYGSVTEHPS(0.009)PS(0.99)PLLSSSFDLDYDFQR;S(0.001)AAEMY(0.001)GS(0.006)VT(0.006)EHPS(0.155)PS(0.807)PLLS(0.008)S(0.008)S(0.008)FDLDYDFQR ;; 200.58 3.03E-29 218335000 110180 127078 124785 15228.5 144589 92986 117472 120892 112666 71456 TRUE FALSE FALSE 102456.951 117007.8765 173105.0939 35452.71761 126453.2994 81514.33273 88079.26311 93367.53065 122431.9796 53562.9525 1.9128324 2.184492658 3.231806422 0.661888786 2.36083512 1.521841663 1.644406423 1.743136371 2.285758605 1 15.70894787 -5.252636111 24.99976407 1.663492508 2.417188596 0.305049906 0.575832628 871.2331677 2474147.166 0.150641719 0.255919241 5.59E-06 5.252636111 0.753696088 SAAETVTK ddPTM_HeLa_A485_30min_R1 1 SAAETVTK 8 0 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 122.52 0.0045972 47888000 40190 34280 19033 45639 30154 46221 41546 56865 36246 70398 FALSE FALSE TRUE 49130.12685 38288.7478 26074.09873 48132.14301 27151.76188 48641.06009 32669.3577 42918.76959 43520.23973 52849.07418 0.929630795 0.724492309 0.493369073 0.910747137 0.513760407 0.920376768 0.618163293 0.81210069 0.823481592 1 15.68959058 -8.109966138 1.227904248 0.998908107 0.725737528 0.220684583 0.150988743 0.864555622 2.796634538 0.135289057 0.041815839 7.76E-09 8.109966138 -0.273170579 SAAPLIICPMSGIDGFS(ph)GHVGNHGHSMETSP ddPTM_HeLa_A485_30min_R1 2 SAAPLIICPMSGIDGFSGHVGNHGHSMETSP 31 0 A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551;P14373 A0A140T9B9 TRIM27 Zinc finger protein RFP 1 0 SAAPLIICPMS(0.034)GIDGFS(0.242)GHVGNHGHS(0.242)MET(0.242)S(0.242)P;SAAPLIICPMS(0.001)GIDGFS(0.25)GHVGNHGHS(0.25)MET(0.25)S(0.25)P ; 79.017 0.0006769 196359000 68302 99934 120111 48415 146944 94987 105487 126669 97410 70025 TRUE FALSE FALSE 83495.54426 111620.412 164545.0571 51059.78886 132313.7394 99960.37244 82948.8407 95603.22914 116959.2935 52569.05621 1.588302136 2.123310176 3.130074401 0.971289814 2.516951015 1.901505936 1.577902414 1.818621753 2.22486957 1 15.68192621 -10.98269373 0.3004263 2.07E-11 2.07350522 0.214647279 0.555343747 51.05837537 2.352003236 37.06493204 0.577528382 1.04E-11 10.98269373 2.07350522 SAAPLIICPMSGIDGFS(ph)GHVGNHGHSMETSP ddPTM_HeLa_A486_30min_R1 1 SAAPLIICPMSGIDGFSGHVGNHGHSMETSP 31 0 A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551;P14373 A0A140T9B9 TRIM27 Zinc finger protein RFP 1 0 SAAPLIICPMS(0.033)GIDGFS(0.242)GHVGNHGHS(0.242)MET(0.242)S(0.242)P 78.45 0.00071303 199730000 67605 60685 68806 7989.4 91118 50825 65312 63172 61728 35755 TRUE FALSE FALSE 62866.23861 55876.09959 95449.52589 18599.72696 79689.1308 44554.72825 48970.2468 48789.11464 67078.63274 26801.71527 2.345605047 2.084795656 3.561321539 0.693975246 2.973284731 1.662383463 1.827131073 1.820372843 2.502773873 1 14.71003771 -10.42591126 0.168424589 4.24E-14 2.557323863 0.186316344 0.734156067 51.60584289 1.564765893 27.81998559 3.309738979 3.75E-11 10.42591126 2.557323863 SAAPLIICPMSGIDGFSGHVGNHGHSMETS(ph)P ddPTM_HeLa_A485_30min_R1 1 SAAPLIICPMSGIDGFSGHVGNHGHSMETSP 31 0 A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551;P14373 A0A140T9B9 TRIM27 Zinc finger protein RFP 1 0 SAAPLIICPMS(0.02)GIDGFS(0.131)GHVGNHGHS(0.131)MET(0.121)S(0.597)P 84.515 0.00032671 155000000 79570 140220 160780 50883 201750 122150 181190 184770 135810 107390 TRUE FALSE FALSE 97270.07199 156617.5092 220259.2126 53662.60945 181663.0616 128545.5851 142477.2763 139454.8678 163065.8213 80619.64937 1.206530576 1.942671675 2.732078524 0.665626927 2.253334802 1.594469663 1.767277301 1.729787575 2.022656047 1 16.29884389 -9.956250001 5.471316335 0.999998487 1.777310168 0.1581813 0.531332266 9.29E-06 1.77E-06 0.487448782 0.118223464 1.11E-10 9.956250001 0.777311682 SAAQPST(ph)SPAEVQSLKK ddPTM_HeLa_A486_30min_R1 1 SAAQPSTSPAEVQSLKK 17 1 Q14789-4;Q14789-3;Q14789;Q14789-2 Q14789-4 GOLGB1 Golgin subfamily B member 1 1 0 SAAQPS(0.033)T(0.568)S(0.399)PAEVQSLKK 84.166 0.0016097 135800000 259710 235010 114380 101360 225660 228510 278340 279540 218640 343610 TRUE FALSE FALSE 241505.6701 216386.9517 158670.9992 235971.2025 197355.6186 200318.7595 208696.388 215894.8443 237591.8912 257567.8195 0.937639145 0.84011641 0.616035806 0.916151726 0.76622778 0.777732094 0.810258007 0.838205816 0.922444006 1 17.97459283 -7.883376787 1.792498754 0.999453871 0.803987211 0.359075672 0.083212071 0.355322747 2.46028292 0.078245985 0.022628974 1.31E-08 7.883376787 -0.195466661 SAAQPSTS(ph)PAEVQSLKK ddPTM_HeLa_A485_30min_R1 1 SAAQPSTSPAEVQSLKK 17 1 Q14789-4;Q14789-3;Q14789;Q14789-2 Q14789-4 GOLGB1 Golgin subfamily B member 1 1 0 SAAQPS(0.18)T(0.135)S(0.685)PAEVQSLKK 94.201 0.00042116 143220000 183760 200950 107370 206210 189840 211620 267580 296750 158960 326840 TRUE FALSE FALSE 224636.778 224449.3545 147090.631 217474.7301 170938.863 222700.096 210409.3471 223971.5972 190861.8139 245364.803 0.915521604 0.914757747 0.599477306 0.886332218 0.696672306 0.907628532 0.857536796 0.912810617 0.77786957 1 17.90456879 SAAQPSTS(ph)PAEVQSLKK ddPTM_HeLa_A486_30min_R1 1 SAAQPSTSPAEVQSLKK 17 1 Q14789-4;Q14789-3;Q14789;Q14789-2 Q14789-4 GOLGB1 Golgin subfamily B member 1 1 0 SAAQPS(0.076)T(0.229)S(0.695)PAEVQSLKK 150.94 2.66E-08 133710000 349800 282800 145770 109570 268200 317470 438840 336740 242980 449570 TRUE FALSE FALSE 325280.8264 260389.8981 202216.0479 255084.4974 234559.8551 278303.7792 329037.5904 260071.653 264041.702 336994.7458 0.965240053 0.772682368 0.600056975 0.756939093 0.696034161 0.825840114 0.976387895 0.771738006 0.78351875 1 18.36236657 -6.513136149 24.18692077 0.869207134 0.751220519 0.222729102 0.108457754 518.2200871 1286538.669 0.040989014 0.033689299 3.07E-07 6.513136149 -0.117986615 SAAS(ph)PVVSSMPER ddPTM_HeLa_A485_30min_R1 5 SAASPVVSSMPER 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER;SAAS(0.998)PVVS(0.001)SMPER;SAAS(0.996)PVVS(0.003)S(0.001)MPER ;;;; 236.22 8.19E-35 6265300000 2326640 2801120 2597640 2873900 3374480 2764790 3399620 3215150 2651800 3578650 TRUE FALSE FALSE 2844193.041 3128686.617 3558615.133 3030893.88 3038504.923 2909550.129 2673263.415 2426629.421 3183991.936 2686558.415 1.058675302 1.164570478 1.324599946 1.128169729 1.131002738 1.083002742 0.995051289 0.903248337 1.185156414 1 21.35732778 -6.275758376 1.763498312 1.014644754 1.178033706 0.351201397 0.090153563 0.387026968 2.376129695 0.038522516 0.03480014 5.30E-07 6.275758376 0.163388951 SAAS(ph)PVVSSMPER ddPTM_HeLa_A486_30min_R1 4 SAASPVVSSMPER 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER;SAAS(1)PVVSSMPER ;;; 282.54 7.40E-49 6107100000 3600890 3755150 2897410 1251140 4247380 3661160 4039540 3983120 3290700 4024310 TRUE FALSE FALSE 3348486.206 3457578.238 4019364.747 2912717.149 3714633.995 3209483.303 3028804.366 3076250.527 3575940.526 3016596.582 1.110021216 1.146185161 1.332417059 0.965564029 1.231398994 1.063941835 1.004046873 1.019775248 1.18542219 1 21.52449034 -6.412357091 8.05808883 1.051188506 1.155429605 0.209873311 0.099573473 0.480783141 31.64695195 0.034343016 0.030227919 3.87E-07 6.412357091 0.104241099 SAATLITHPFHVITLR ddPTM_HeLa_A485_30min_R1 1 SAATLITHPFHVITLR 16 0 E9PIE4;Q9Y6C9 E9PIE4 MTCH2 Mitochondrial carrier homolog 2 0 0 179.25 1.76E-13 12393000 13515 14663 10669 14617 10572 13373 16466 16680 10089 27966 FALSE FALSE TRUE 16521.36512 16377.7103 14615.90707 15415.4897 9519.414559 14073.1896 12947.90459 12589.20385 12113.76976 20994.59088 0.786934369 0.780091901 0.696174894 0.734260067 0.453422247 0.670324546 0.61672574 0.599640351 0.5769948 1 14.35773005 -10.54363978 5.769388219 1.000801673 0.655716073 0.533457237 0.096172571 0.001062538 8.40E-05 0.099770231 0.024144373 2.86E-11 10.54363978 -0.3450856 SAATLITHPFHVITLR ddPTM_HeLa_A486_30min_R1 2 SAATLITHPFHVITLR 16 0 E9PIE4;Q9Y6C9 E9PIE4 MTCH2 Mitochondrial carrier homolog 2 0 0 ; ; 139.6 2.21E-08 20415400 16354.4 17541.8 17324.3 7351.2 23055.4 16733.5 17794.9 18358 23484 23257.2 FALSE FALSE TRUE 15208.04101 16151.72388 24032.73292 17113.96511 20163.57675 14669.0909 13342.4278 14178.28415 25519.61203 17433.44574 0.872348544 0.926479144 1.378541757 0.981674269 1.156603063 0.841433823 0.765335092 0.813280654 1.46383064 1 14.08957013 -6.254638329 24.8132682 0.951891024 1.068535297 0.029839495 0.223760446 1658.994684 6052757.583 0.076037201 0.074409868 5.56E-07 6.254638329 0.116644273 SAAVETASLS(ph)PSLVPAR ddPTM_HeLa_A485_30min_R1 3 SAAVETASLSPSLVPAR 17 0 Q2KHT3-3;Q2KHT3 Q2KHT3-3 CLEC16A Protein CLEC16A 1 0 SAAVETASLS(1)PSLVPAR;SAAVETAS(0.019)LS(0.976)PS(0.005)LVPAR;SAAVETASLS(0.999)PSLVPAR ;; 359.96 8.05E-106 285199000 258001 312527 315181 300989 371953 288724 377100 306300 256490 389600 TRUE FALSE FALSE 315392.4324 349074.314 431779.5677 317431.2669 334920.0533 303841.1422 296529.5044 231179.4447 307965.1903 292479.8901 1.078338864 1.193498514 1.476270959 1.085309718 1.145104551 1.038844558 1.013845787 0.790411418 1.052944838 1 18.15797791 -6.227616976 1.280494702 0.943735675 1.231751415 0.4693575 0.119849694 0.376704733 1.260201536 0.058407899 0.054207304 5.92E-07 6.227616976 0.28801574 SAAVETASLS(ph)PSLVPAR ddPTM_HeLa_A486_30min_R1 4 SAAVETASLSPSLVPAR 17 0 Q2KHT3-3;Q2KHT3 Q2KHT3-3 CLEC16A Protein CLEC16A 1 0 SAAVETAS(0.012)LS(0.98)PS(0.007)LVPAR;SAAVET(0.001)AS(0.309)LS(0.614)PS(0.077)LVPAR;SAAVETAS(0.007)LS(0.94)PS(0.053)LVPAR;SAAVETAS(0.028)LS(0.97)PS(0.002)LVPAR ;;; 254.59 2.20E-51 428318000 370172 381042 322546 165752 391808 348562 399194 419259 315158 431798 TRUE FALSE FALSE 344224.8544 350846.8442 447444.4493 385879.0326 342663.7872 305559.9644 299311.439 323802.8781 342476.1492 323672.9703 1.063495831 1.083954721 1.38239671 1.192188005 1.058672854 0.944039177 0.924734119 1.000401355 1.058093139 1 18.30417737 -5.914026622 3.60882428 0.982818084 1.187624651 0.5266751 0.086951932 0.195720827 5.018597142 0.030434737 0.034723029 1.22E-06 5.914026622 0.204806567 SACGVCPGR ddPTM_HeLa_A485_30min_R1 2 SACGVCPGR 9 0 P49207 P49207 RPL34 60S ribosomal protein L34 0 0 ; ; 133.6 0.0015832 31909000 8966.6 12116.9 12007.9 8771.6 13494.2 10919.6 13199.2 17195.8 11656.3 14489.8 FALSE FALSE TRUE 10961.18924 13533.86605 16450.1219 9250.770297 12150.67007 11491.33337 10379.08309 12978.50309 13995.61249 10877.75953 1.007669751 1.244177721 1.512271149 0.850429749 1.117019552 1.05640627 0.954156329 1.193122817 1.286626392 1 13.40909382 -5.26884998 24.99846318 1.070582858 1.253653361 0.225027466 0.1607898 901.6486114 3041564.527 0.046104425 0.06993688 5.38E-06 5.26884998 0.183070503 SACMLSS(ph)PESSLTPPLSTNLHLESELDALASLENHVK ddPTM_HeLa_A485_30min_R1 1 SACMLSSPESSLTPPLSTNLHLESELDALASLENHVK 37 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 S(0.003)ACMLS(0.129)S(0.826)PES(0.036)S(0.006)LT(0.001)PPLSTNLHLESELDALASLENHVK 134.1 7.82E-07 84771000 17662 17313 18577 13179 25073 19156 28931 32464 18479 24677 TRUE FALSE FALSE 21590.85097 19337.60475 25449.40535 13898.9354 22576.64408 20158.97854 22749.65551 24502.1531 22187.5658 18525.47805 1.165467952 1.043838367 1.373751613 0.750260553 1.218680783 1.088175889 1.22801989 1.322619208 1.197678448 1 14.17722315 -6.762281611 24.90112265 1.213964334 1.104866212 0.043537782 0.166350004 55.64078801 1644938.429 0.064077766 0.046075151 1.73E-07 6.762281611 -0.109098122 SACMLSSPES(ph)SLTPPLSTNLHLESELDALASLENHVK ddPTM_HeLa_A485_30min_R1 1 SACMLSSPESSLTPPLSTNLHLESELDALASLENHVK 37 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 S(0.05)ACMLS(0.293)S(0.261)PES(0.329)S(0.058)LT(0.01)PPLSTNLHLESELDALASLENHVK 105.48 4.64E-05 137190000 2982.7 3936.4 3385.1 3120.6 3916.8 3953.3 6323 5527.1 2612.9 6231.5 TRUE FALSE FALSE 3646.191325 4396.727738 4637.389356 3291.070476 3526.829639 4160.288675 4972.039396 4171.570059 3137.285063 4678.101732 0.779416852 0.939852955 0.991297244 0.703505538 0.753901869 0.889311288 1.062832679 0.891722818 0.670632073 1 12.19170752 -6.505742461 24.34261339 0.908530663 0.839089609 0.073744692 0.123115897 1725.414556 2451011.679 0.046547807 0.040069224 3.12E-07 6.505742461 -0.069441054 SACMLSSPESSLT(ph)PPLSTNLHLESELDALASLENHVK ddPTM_HeLa_A486_30min_R1 2 SACMLSSPESSLTPPLSTNLHLESELDALASLENHVK 37 0 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 SACMLSSPESS(0.002)LT(0.997)PPLSTNLHLESELDALASLENHVK;SACMLS(0.001)S(0.001)PES(0.133)S(0.127)LT(0.67)PPLS(0.02)T(0.02)NLHLES(0.022)ELDALAS(0.005)LENHVK ; 142.78 3.39E-09 241212000 24183.7 24282.7 16841.2 4141.9 29064 25536.2 27735.7 28093 19725 23645 TRUE FALSE FALSE 22488.54751 22358.45042 23362.56366 9642.55252 25418.52211 22385.80328 20795.9345 21696.83717 21434.77888 17724.1381 1.268809089 1.261468981 1.318121284 0.544035059 1.434118938 1.263012235 1.173311469 1.224140607 1.209355217 1 14.11342785 -10.83982006 2.38031796 0.922897471 1.185509627 0.058661786 0.226231541 34189258.4 20557072.04 15032734.03 0.056873205 1.45E-11 10.83982006 0.262612156 SADGS(ph)APAGEGEGVTLQR ddPTM_HeLa_A485_30min_R1 2 SADGSAPAGEGEGVTLQR 18 0 Q01650 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 1 0 SADGS(1)APAGEGEGVTLQR;SADGS(1)APAGEGEGVTLQR ; 353.55 2.26E-115 660530000 368440 337280 218930 408790 244070 349690 445700 391450 284280 728650 TRUE FALSE FALSE 450398.2069 376721.9621 299921.3174 431121.1626 219769.5338 367999.2277 350472.554 295446.2737 341332.3884 547010.9648 0.823380583 0.688691793 0.548291235 0.788139892 0.401764403 0.672745615 0.640704806 0.540110332 0.623995515 1 19.06121023 -10.30013241 6.080265279 1.000020479 0.631291782 0.468789608 0.115991562 3.13E-05 3.60E-06 0.10907193 0.026452362 5.01E-11 10.30013241 -0.368728697 SADGS(ph)APAGEGEGVTLQR ddPTM_HeLa_A486_30min_R1 1 SADGSAPAGEGEGVTLQR 18 0 Q01650 Q01650 SLC7A5 Large neutral amino acids transporter small subunit 1 1 0 SADGS(1)APAGEGEGVTLQR 292.88 3.78E-72 0 127070 140600 153830 69663 205850 175240 133010 146550 169220 209690 TRUE FALSE FALSE 118163.0492 129458.3439 213397.0957 162178.9846 180030.3735 153620.6705 99729.49116 113183.7642 183888.1258 157182.2591 0.751758181 0.823619311 1.357641103 1.031789373 1.145360644 0.977341027 0.634483126 0.720079765 1.169903823 1 17.26207887 -6.537132902 24.95375368 0.850378836 1.033312892 0.085280976 0.207138064 486.4616009 851606.7597 0.081882594 0.063452102 2.90E-07 6.537132902 0.182934056 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(ph)PHNIGTSR ddPTM_HeLa_A485_30min_R1 3 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGSPHNIGTSR 44 1 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 SADLHPLSELPENRPCENGS(0.001)T(0.001)HS(0.001)AGEFFT(0.018)GPVQPGS(0.948)PHNIGT(0.016)S(0.016)R;SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(0.999)PHNIGTSR;SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(1)PHNIGTSR ;; 141.03 7.35E-10 2708100000 101967 147232 165619 79217 192260 127272 152417 186534 129137 138541 TRUE FALSE FALSE 124649.2074 164449.5017 226888.3601 83544.42412 173117.9193 133935.7651 119851.8628 140786.244 155053.6114 104005.2784 1.198489243 1.581164959 2.181508128 0.803271002 1.664510899 1.287778536 1.152363271 1.353645183 1.490824445 1 16.66629722 -5.26703124 24.99730546 1.279811605 1.646465186 0.249165911 0.317943569 693.5062496 3100183.641 0.08744497 0.133940573 5.41E-06 5.26703124 0.366653581 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(ph)PHNIGTSR ddPTM_HeLa_A486_30min_R1 2 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGSPHNIGTSR 44 1 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(0.991)PHNIGT(0.005)S(0.005)R;SADLHPLSELPENRPCENGSTHSAGEFFTGPVQPGS(0.997)PHNIGT(0.002)S(0.002)R ; 122.29 5.53E-08 1683770000 189847 220016 204171 23652.3 267310 153819 190801 154715 209029 121636 TRUE FALSE FALSE 176539.7057 202581.1309 283231.4791 55063.74972 233781.4872 134842.3757 143060.5717 119489.7719 227147.802 91177.55388 1.936218928 2.221831166 3.106372863 0.603917822 2.564024557 1.478898807 1.56903279 1.310517412 2.491268874 1 16.47639108 -5.246497192 24.99968642 1.623977206 2.401509885 0.274681278 0.627191288 1139.682262 1906792.795 0.161850815 0.278900741 5.67E-06 5.246497192 0.777532678 SADTLWGIQK ddPTM_HeLa_A485_30min_R1 1 SADTLWGIQK 10 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 169.44 1.33E-05 65256000 175870 200160 157090 203900 254500 207600 256470 289780 174930 231620 FALSE FALSE TRUE 214991.6748 223566.9708 215204.1281 215038.5407 229161.0864 218469.615 201673.0893 218711.0006 210036.8464 173881.3967 1.236427122 1.285744048 1.23764895 1.23669665 1.317916067 1.256428918 1.159831317 1.257817138 1.207931674 1 17.40774406 -10.70452473 0.32159328 0.787029561 1.265472062 0.803572545 0.036999166 11.51334692 0.659939068 1.94115151 0.03558341 1.97E-11 10.70452473 0.478442501 SADTLWGIQK ddPTM_HeLa_A486_30min_R1 1 SADTLWGIQK 10 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 183.47 1.82E-10 0 212550 226890 171270 112800 391940 236940 270620 281880 187560 257830 FALSE FALSE TRUE 197651.3426 208910.4101 237590.3308 262604.1006 342779.2305 207708.7518 202908.0137 217702.0774 203817.8518 193267.6898 1.022681767 1.080938103 1.229332906 1.358758419 1.773598219 1.074720519 1.04988068 1.12642769 1.054588338 1 17.56024094 -6.463768851 24.99987881 1.067403655 1.295663791 0.26849446 0.191292112 405.5947707 171541.5989 0.073943175 0.065211596 3.44E-07 6.463768851 0.228260136 SADVS(ph)PTTEGVK ddPTM_HeLa_A485_30min_R1 1 SADVSPTTEGVK 12 0 Q9C040-2;Q9C040;A0A0J9YX34 Q9C040-2 TRIM2 Tripartite motif-containing protein 2 1 0 SADVS(0.439)PT(0.164)T(0.396)EGVK 143.76 2.14E-07 270440000 302440 285120 218470 421330 359430 320820 455870 477240 283930 554370 TRUE FALSE FALSE 369716.7346 318462.3038 299291.1443 444346.191 323643.8872 337617.6391 358469.6504 360196.1417 340912.1466 416175.7614 0.888366812 0.76521108 0.719146024 1.06768878 0.777661549 0.811238112 0.86134197 0.865490437 0.819154257 1 18.66683342 -10.81543305 2.483521673 1.055330437 0.84099044 0.218576388 0.089784317 28411506.55 17939790.35 9412585.782 0.022134122 1.53E-11 10.81543305 -0.214339997 SADVS(ph)PTTEGVK ddPTM_HeLa_A486_30min_R1 1 SADVSPTTEGVK 12 0 Q9C040-2;Q9C040;A0A0J9YX34 Q9C040-2 TRIM2 Tripartite motif-containing protein 2 1 0 SADVS(0.984)PT(0.013)T(0.003)EGVK 188.96 3.98E-13 244760000 253570 319240 161030 123320 312860 337100 413860 388860 241820 381710 TRUE FALSE FALSE 235796.0524 293942.2597 223385.1285 287095.1922 273618.1815 295512.0294 310307.8506 300325.0668 262781.1523 286127.3315 0.824094822 1.027312764 0.780719295 1.003382623 0.956281178 1.032799026 1.084509645 1.049620339 0.91840633 1 18.12629779 -5.452609942 16.214697 1.011430137 0.892300633 0.385925544 0.073764439 5.601455946 1291.33554 0.020230783 0.030006507 3.53E-06 5.452609942 -0.119129504 SADVSPTT(ph)EGVK ddPTM_HeLa_A486_30min_R1 1 SADVSPTTEGVK 12 0 Q9C040-2;Q9C040;A0A0J9YX34 Q9C040-2 TRIM2 Tripartite motif-containing protein 2 1 0 SADVS(0.242)PT(0.242)T(0.516)EGVK 141.13 0.0001399 0 331360 382400 201490 132080 397390 428110 485430 478290 263160 474920 TRUE FALSE FALSE 308133.3751 352097.2313 279512.3241 307488.915 347545.6407 375294.1409 363970.2796 369393.808 285970.9207 355996.9408 0.865550627 0.989045666 0.785153725 0.86374033 0.976260189 1.054206084 1.022397212 1.037631973 0.803296006 1 18.44150532 -5.805496638 6.134939272 0.990596509 0.877444085 0.29598775 0.079911933 0.239224522 21.83270855 0.025053556 0.02896229 1.56E-06 5.805496638 -0.113152424 SAEALGPGALVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SAEALGPGALVSPR 14 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 SAEALGPGALVS(1)PR 142.19 1.65E-05 0 188600 233600 222410 199680 268430 206290 273600 282770 228320 246860 TRUE FALSE FALSE 230553.4193 260917.488 304688.7143 210588.0128 241704.1667 217091.0254 215143.1249 213420.2141 274141.7297 185322.3451 1.244067029 1.407911646 1.644101331 1.136333628 1.3042365 1.171423906 1.160913028 1.151616196 1.479269699 1 17.49967732 -5.288019851 24.99412067 1.208315348 1.429615243 0.338627164 0.14795947 834.3660146 784568.2687 0.040762891 0.060478894 5.15E-06 5.288019851 0.221299895 SAEEPGALDGGEPHGVPAFPDEVQS(ph)EHELALDYPDVDIMR ddPTM_HeLa_A485_30min_R1 1 SAEEPGALDGGEPHGVPAFPDEVQSEHELALDYPDVDIMR 40 0 E7EV90;Q5BKX6-2;Q5BKX6;Q5BKX6-3 E7EV90 SLC45A4 Solute carrier family 45 member 4 1 0 SAEEPGALDGGEPHGVPAFPDEVQS(0.999)EHELALDY(0.001)PDVDIMR 70.61 0.00098283 37582000 13942 11858 10919 12437 12308 15169 17251 18919 12928 27125 TRUE FALSE FALSE 17043.3498 13244.68995 14958.39248 13116.40182 11082.5723 15963.22538 13565.18292 14279.08559 15522.53102 20363.2367 0.83696664 0.650421647 0.734578333 0.64412166 0.544244143 0.783923775 0.66616045 0.701218858 0.762282109 1 14.31367927 -8.294264059 1.677389894 0.999959562 0.689021688 0.589580405 0.076172178 0.786110654 3.421853887 0.071753774 0.020430476 5.08E-09 8.294264059 -0.310937874 SAEFLLHMLK ddPTM_HeLa_A486_30min_R1 2 SAEFLLHMLK 10 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3;A0A087WY81;J3KRB3;A0A087WWH0;J3QS96 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 0 0 ; ; 123.88 0.0011199 13365200 19493.9 29331 20855.5 13165.2 34236 31503 33417 32753 24152 33135 FALSE FALSE TRUE 18127.47828 27006.70474 28931.30813 30649.25093 29941.80164 27616.48016 25055.71315 25295.85689 26245.51481 24837.78033 0.729834874 1.087323601 1.164810533 1.233977051 1.205494261 1.111873919 1.008774247 1.018442734 1.056677145 1 14.60024863 -9.982086561 13.54857957 0.99999965 1.078891807 0.017918379 0.133987071 0 0 0.135698392 0.032911694 1.04E-10 9.982086561 0.078892158 SAEGS(ph)TVPLTR ddPTM_HeLa_A486_30min_R1 1 SAEGSTVPLTR 11 0 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 S(0.101)AEGS(0.637)T(0.262)VPLTR 63.408 0.023199 61286000 7886 7303.2 6432.8 3702 9922.3 9635.5 9442.7 11052 6824.3 10589 TRUE FALSE FALSE 7333.232123 6724.467834 8923.752436 8618.443089 8677.752612 8446.769977 7080.036585 8535.700863 7415.835819 7937.445477 0.92387811 0.847182869 1.124259998 1.085795564 1.093267681 1.064167307 0.89197924 1.075371275 0.934284946 1 12.95445906 -4.749584052 24.99993901 1.036355686 0.885530442 0.40615476 0.07157653 216.9384966 457461.1473 0.018650839 0.048482542 1.78E-05 4.749584052 -0.150825244 SAEPPRS(ph)PLLK ddPTM_HeLa_A485_30min_R1 2 SAEPPRSPLLK 11 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;Q9Y2H9;O15021;H7C1I9;O15021-2;O15021-3;O15021-6 Q6P0Q8;O15021 MAST2;MAST1;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4 1 0 SAEPPRS(1)PLLK;SAEPPRS(1)PLLK ; 95.651 0.00097295 283680000 464200 472400 360640 586440 552980 479950 662620 646570 457380 879500 TRUE FALSE FALSE 567459.6885 527643.0707 494055.7435 618475.7323 497923.3696 505079.4399 521045.8239 487997.6937 549171.9707 660256.836 0.859452955 0.799148213 0.748278119 0.936719923 0.754135879 0.764974192 0.789156273 0.739102827 0.83175507 1 19.33266781 -8.031397419 22.21997658 1.000000003 0.798005482 0.529343285 0.056617174 709.4545972 502082.0196 0.054166271 0.013985671 9.30E-09 8.031397419 -0.201994521 SAEPPRS(ph)PLLK ddPTM_HeLa_A486_30min_R1 1 SAEPPRSPLLK 11 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;Q9Y2H9;O15021;H7C1I9;O15021-2;O15021-3;O15021-6 Q6P0Q8;O15021 MAST2;MAST1;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4 1 0 SAEPPRS(1)PLLK 91.076 0.0012843 143780000 300690 314960 184340 113770 309340 327970 373590 331410 277570 392330 TRUE FALSE FALSE 279613.1838 290001.4225 255721.3848 264862.3096 270539.6927 287508.396 280113.8306 255955.1776 301629.9911 294088.0144 0.950780617 0.986104188 0.869540316 0.900622591 0.919927639 0.977627043 0.952482988 0.870335291 1.025645305 1 18.16588846 -6.239708829 23.53913846 0.956318137 0.924288503 0.135776098 0.047618964 1003.188731 1086680.618 0.015972587 0.015952676 5.76E-07 6.239708829 -0.032029634 SAEPPRS(ph)PLLKR ddPTM_HeLa_A485_30min_R1 1 SAEPPRSPLLKR 12 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;Q9Y2H9;O15021;H7C1I9;O15021-2;O15021-3;O15021-6 Q6P0Q8;O15021 MAST2;MAST1;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4 1 0 S(0.002)AEPPRS(0.998)PLLKR 74.966 0.0041401 184500000 249960 295230 215850 313490 340880 379280 439130 511190 229590 441180 TRUE FALSE FALSE 305562.7396 329754.5803 295701.8973 330615.1649 306940.7903 399138.5143 345306.2881 385819.851 275666.6071 331201.9453 0.922587394 0.995629962 0.892814494 0.99822833 0.926748151 1.205121286 1.042585326 1.164908167 0.832321824 1 18.33735162 SAEPPRS(ph)PLLKR ddPTM_HeLa_A486_30min_R1 2 SAEPPRSPLLKR 12 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;Q9Y2H9;O15021;H7C1I9;O15021-2;O15021-3;O15021-6 Q6P0Q8;O15021 MAST2;MAST1;MAST4 Microtubule-associated serine/threonine-protein kinase 2;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4 1 0 SAEPPRS(1)PLLKR;SAEPPRS(1)PLLKR ; 107.34 0.0002276 478390000 653920 658080 378650 305680 723820 661420 902440 799530 509770 933530 TRUE FALSE FALSE 608083.5848 605931.3441 525273.4206 711638.4882 633031.7462 579820.7252 676639.967 617494.4726 553957.274 699768.0117 0.868978825 0.865903176 0.750639372 1.016963445 0.904630871 0.828589926 0.966948983 0.882427408 0.79162989 1 19.41651719 SAEPRPELGPGQETGTNS(ph)R ddPTM_HeLa_A485_30min_R1 3 SAEPRPELGPGQETGTNSR 19 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 SAEPRPELGPGQET(0.016)GT(0.085)NS(0.898)R;SAEPRPELGPGQET(0.037)GT(0.091)NS(0.872)R;SAEPRPELGPGQET(0.016)GT(0.114)NS(0.871)R ;; 157.9 1.51E-09 881390000 396052 524128 445455 370922 549516 433264 524586 575716 406491 466368 TRUE FALSE FALSE 484152.401 585420.2103 610247.3414 391184.5296 494804.2576 455949.0331 412503.9156 434520.7483 488070.0151 350111.0405 1.382853852 1.672098685 1.743010848 1.117315607 1.413278076 1.302298358 1.178208819 1.241094105 1.394043485 1 18.41745303 -5.261504345 24.99999546 1.253066444 1.606598889 0.568958755 0.144618233 4.192404883 1613526.597 0.038946356 0.062211666 5.48E-06 5.261504345 0.353532444 SAEPRPELGPGQETGTNS(ph)R ddPTM_HeLa_A486_30min_R1 2 SAEPRPELGPGQETGTNSR 19 1 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 SAEPRPELGPGQET(0.004)GT(0.053)NS(0.943)R;SAEPRPELGPGQET(0.224)GT(0.172)NS(0.604)R ; 114.64 1.87E-05 1426960000 440740 471330 422220 157595 563620 414650 472190 495660 410760 421770 TRUE FALSE FALSE 409846.402 433980.0942 585714.8914 366889.1244 492925.5241 363494.6989 354043.0677 382809.0382 446365.0075 316156.0467 1.296342127 1.372676875 1.852613282 1.160468472 1.559120976 1.149731921 1.119836458 1.21082308 1.411850294 1 18.27027729 -6.271072367 24.77012405 1.187961537 1.450523547 0.323516503 0.194811302 774.6349481 1991879.06 0.067277585 0.060079426 5.36E-07 6.271072367 0.26256201 SAEPSPTVMSTS(ph)LGSNLSELDR ddPTM_HeLa_A485_30min_R1 4 SAEPSPTVMSTSLGSNLSELDR 22 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 SAEPSPTVMS(0.034)T(0.223)S(0.743)LGSNLSELDR;SAEPSPTVMS(0.069)T(0.115)S(0.815)LGSNLSELDR;SAEPSPTVMS(0.122)T(0.122)S(0.755)LGSNLSELDR;SAEPSPTVMS(0.175)T(0.142)S(0.679)LGS(0.004)NLSELDR ;;; 243.99 7.30E-47 977420000 829680 941920 803400 927350 1003300 802780 1099480 945260 695237 1211820 TRUE FALSE FALSE 1014239.454 1052069.35 1100611.092 978008.7823 903407.9292 844812.3195 864567.1161 713433.5029 834764.6888 909735.5759 1.114872805 1.156456204 1.209814282 1.075047309 0.993044521 0.928635025 0.950349903 0.784220736 0.917590464 1 19.79508775 -5.840992779 1.509116841 0.899687232 1.161768401 0.778577825 0.056973354 0.168632352 0.797843343 0.021808075 0.027829734 1.44E-06 5.840992779 0.262081169 SAEPSPTVMSTS(ph)LGSNLSELDR ddPTM_HeLa_A486_30min_R1 4 SAEPSPTVMSTSLGSNLSELDR 22 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 SAEPSPTVMS(0.013)T(0.29)S(0.696)LGSNLSELDR;SAEPSPTVMS(0.036)T(0.028)S(0.936)LGSNLSELDR;SAEPSPT(0.001)VMS(0.114)T(0.114)S(0.765)LGS(0.006)NLSELDR;SAEPSPTVMS(0.069)T(0.055)S(0.875)LGSNLSELDR ;;; 219.96 7.26E-36 934300000 918440 998450 760915 607316 977380 987500 1246080 1166600 781401 1341675 TRUE FALSE FALSE 854062.0988 919329.1857 1055561.666 1413862.34 854787.8867 865672.2902 934297.6043 900990.6467 849133.4678 1005710.847 0.849212377 0.91410885 1.049567745 1.405833838 0.849934043 0.860756641 0.928992271 0.895874445 0.844311733 1 19.93978414 SAEQQPSEK ddPTM_HeLa_A485_30min_R1 1 SAEQQPSEK 9 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;H0Y944;D6RBR1;D6RGF7;E9PCH5;P20810-2;E7EQK6;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 0 0 96.89 0.018716 0 2566.7 2240.8 1365.9 3596.7 1805.8 3524.6 2611 3653.2 3000.7 4714.5 FALSE FALSE TRUE 3137.65356 2502.842068 1871.20325 3793.178614 1626.008211 3709.142606 2053.13852 2757.246972 3602.912966 3539.261914 0.886527654 0.707164976 0.528698722 1.07174284 0.459420142 1.047998904 0.580103584 0.779045756 1.017984273 1 11.78923281 -7.737258214 5.790007389 1.011759248 0.751479681 0.212346073 0.193780522 0.224951299 22.66799256 0.137213141 0.045616427 1.83E-08 7.737258214 -0.260279567 SAES(ph)PTSPVTSETGSTFK ddPTM_HeLa_A485_30min_R1 2 SAESPTSPVTSETGSTFK 18 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.997)PT(0.003)SPVTSETGSTFK;SAES(0.972)PT(0.027)SPVTSETGSTFK ; 268.42 1.82E-58 339540000 503020 447110 380110 634410 608690 455020 578270 565280 453420 824960 TRUE FALSE FALSE 614915.0636 499395.6252 520728.5067 669066.2119 548086.6864 478844.1436 454717.8905 426644.1937 544417.235 619312.6543 0.99289924 0.806370775 0.840816836 1.080336737 0.884991906 0.773186435 0.734229936 0.688899526 0.879066867 1 19.2403084 -6.148987334 4.919931554 0.791078332 0.921937915 0.184457094 0.107621265 0.335767045 12.34920691 0.035931301 0.035999067 7.10E-07 6.148987334 0.130859584 SAES(ph)PTSPVTSETGSTFK ddPTM_HeLa_A486_30min_R1 4 SAESPTSPVTSETGSTFK 18 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.981)PT(0.018)S(0.001)PVTSETGSTFK;SAES(1)PTSPVTSETGSTFK;SAES(1)PTSPVTSETGSTFK;SAES(0.855)PT(0.145)SPVTSETGSTFK ;;; 380.5 1.83E-130 372060000 505306 587470 340737 209572 534900 598597 614700 614580 459981 595600 TRUE FALSE FALSE 469886.6588 540916.7377 472679.4917 487894.2072 467807.8543 524748.1882 460895.5584 474653.5502 499852.5234 446457.8833 1.052477012 1.211573942 1.058732546 1.092811272 1.047820795 1.175358769 1.032338269 1.063154147 1.119596141 1 18.76816456 -14 0.155179967 0.655057672 1.122725196 0.203458932 0.055770081 204.9676474 1.855406912 21.795726 0.248831615 1.00E-14 14 0.467667524 SAES(ph)PTSPVTSETGSTFKK ddPTM_HeLa_A485_30min_R1 2 SAESPTSPVTSETGSTFKK 19 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.995)PT(0.005)SPVTSETGSTFKK;SAES(0.982)PT(0.018)SPVTSETGSTFKK ; 222.51 5.51E-35 1117980000 596180 521770 352590 616730 671730 609990 831300 837650 503970 921760 TRUE FALSE FALSE 728798.1842 582786.4627 483027.7135 650420.3983 604850.2026 641928.1332 653685.9639 632215.0241 605112.1563 691982.1957 1.053203664 0.842198638 0.698034887 0.939938054 0.874083475 0.927665679 0.944657201 0.913629033 0.874462031 1 19.40037539 -5.965853032 1.878908657 0.926754172 0.865510432 0.062665352 0.088206752 0.966022369 6.918982915 0.033565414 0.037843452 1.08E-06 5.965853032 -0.061243741 SAES(ph)PTSPVTSETGSTFKK ddPTM_HeLa_A486_30min_R1 2 SAESPTSPVTSETGSTFKK 19 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 S(0.008)AES(0.9)PT(0.089)S(0.003)PVTSETGSTFKK;SAES(0.96)PT(0.034)S(0.005)PVT(0.001)SETGSTFKK ; 217.73 7.82E-35 872720000 710480 631390 282130 271400 613990 677590 844510 814000 528900 835220 TRUE FALSE FALSE 660679.0209 581356.3569 391378.2917 631832.9158 536977.649 593995.835 633204.6657 628669.9695 574745.4778 626075.4756 1.055270565 0.92857232 0.625129568 1.00919608 0.857688362 0.948760746 1.01138711 1.004144059 0.918013083 1 19.25597706 -6.46642726 4.767771413 0.983641043 0.888795241 0.125421903 0.109588926 0.453089148 21.55258318 0.041064992 0.035048987 3.42E-07 6.46642726 -0.094845802 SAESPT(ph)SPVTSETGSTFKK ddPTM_HeLa_A486_30min_R1 1 SAESPTSPVTSETGSTFKK 19 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.305)PT(0.592)S(0.101)PVT(0.001)SETGSTFKK 129.85 3.48E-06 212130000 100100 100770 45522 60955 91027 115470 160830 158660 86234 171140 TRUE FALSE FALSE 93083.50692 92784.6182 63149.33752 141906.3205 79609.54487 101224.4854 120588.6329 122536.5815 93708.83255 128285.4301 0.725596873 0.723267 0.492256506 1.106176441 0.620565756 0.789056757 0.940002562 0.95518705 0.73047136 1 16.9689978 -3.06959239 0.124254179 1.068315895 0.16396113 0.217103046 0.158286952 79.93504694 1.144745541 1.195006463 12.07316469 0.000851937 3.06959239 -0.904354764 SAESPTS(ph)PVTSETGSTFK ddPTM_HeLa_A485_30min_R1 1 SAESPTSPVTSETGSTFK 18 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAESPT(0.02)S(0.975)PVT(0.002)S(0.002)ET(0.001)GSTFK 121.27 2.68E-06 0 99154 94205 69753 119460 120060 86150 127510 116890 88736 172340 TRUE FALSE FALSE 121210.4652 105221.4553 95557.53736 125985.7973 108106.4048 90660.68079 100266.4468 88222.54422 106544.5013 129378.8097 0.936864897 0.813281986 0.738587235 0.97377459 0.835580456 0.700738251 0.774983532 0.681893306 0.823508127 1 16.98124182 -6.016725595 24.66689435 0.774253614 0.859296892 0.073611826 0.101554437 1248.02141 1840580.691 0.031875431 0.032674891 9.62E-07 6.016725595 0.085043278 SAEVGPSSEPEVQTLPYLPHYIPGVDPET(ph)SHGGHPHGNMPGLDRPLSR ddPTM_HeLa_A485_30min_R1 2 SAEVGPSSEPEVQTLPYLPHYIPGVDPETSHGGHPHGNMPGLDRPLSR 48 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 SAEVGPSSEPEVQT(0.001)LPY(0.005)LPHY(0.019)IPGVDPET(0.445)S(0.445)HGGHPHGNMPGLDRPLS(0.086)R;SAEVGPSSEPEVQTLPY(0.001)LPHY(0.001)IPGVDPET(0.346)S(0.346)HGGHPHGNMPGLDRPLS(0.305)R ; 102.08 1.15E-06 813610000 56832 92692 95575 34199 111654 76869 85936 80603 76347 65181 TRUE FALSE FALSE 69474.08233 103531.5231 130932.1697 36067.20477 100537.3357 80893.74198 67575.07157 60834.98787 91669.1426 48932.57627 1.419792041 2.115799555 2.675766937 0.737079621 2.054609493 1.653167443 1.380983319 1.243241058 1.873376585 1 15.57850762 -7.931938219 0.133878245 0.531857937 2.333674971 0.166685054 0.501454071 13.56837447 1.390098776 9.420962019 7.112545255 1.17E-08 7.931938219 1.801817035 SAEVGPSSEPEVQTLPYLPHYIPGVDPETSHGGHPHGNMPGLDRPLS(ph)R ddPTM_HeLa_A486_30min_R1 2 SAEVGPSSEPEVQTLPYLPHYIPGVDPETSHGGHPHGNMPGLDRPLSR 48 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 SAEVGPSSEPEVQTLPYLPHYIPGVDPET(0.136)S(0.136)HGGHPHGNMPGLDRPLS(0.728)R;SAEVGPSSEPEVQTLPYLPHYIPGVDPET(0.124)S(0.124)HGGHPHGNMPGLDRPLS(0.751)R ; 151.93 2.01E-14 1064740000 139837 128213 147306 22719.3 168728 101008 121916 128883 116158 81959 TRUE FALSE FALSE 130035.1484 118052.9349 204346.8282 52891.67857 147564.5609 88546.65993 91411.3273 99539.1544 126226.669 61435.93294 2.116597603 1.921561687 3.326177669 0.860924154 2.401925939 1.441284533 1.487913065 1.620210675 2.05460653 1 15.90679509 -5.269411606 24.99991941 1.606330408 2.401457273 0.361812943 0.544536471 690.5344035 2165430.265 0.146458173 0.221636806 5.38E-06 5.269411606 0.795126865 SAFLAAHIPLFLYPFLHTVSK ddPTM_HeLa_A485_30min_R1 2 SAFLAAHIPLFLYPFLHTVSK 21 0 Q92600-3;Q92600;Q92600-2 Q92600-3 RQCD1 Cell differentiation protein RCD1 homolog 0 0 ; ; 181.14 2.07E-23 16084800 21767.7 28916.5 22765.1 23442.7 30658.8 19431.9 43398.6 36122.1 16997.8 36873.9 FALSE FALSE TRUE 26609.84977 32298.03313 31186.85782 24723.31534 27606.30222 20449.32424 34126.13458 27263.09834 20409.10255 27681.91534 0.961271987 1.166755722 1.126614883 0.893121557 0.997268501 0.738725048 1.23279528 0.984870375 0.737272053 1 14.75665615 -5.256811772 24.92689616 0.946075734 1.093068356 0.176166033 0.142325179 663.7587191 3575364.471 0.038881223 0.064614933 5.54E-06 5.256811772 0.146992621 SAFS(ph)SLQNIPESLRR ddPTM_HeLa_A485_30min_R1 2 SAFSSLQNIPESLRR 15 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 S(0.028)AFS(0.486)S(0.486)LQNIPESLRR;S(0.029)AFS(0.485)S(0.485)LQNIPESLRR ; 65.175 0.0097583 243810000 39289 85668 83066 75834 69242 64209 59540 64953 69507 64332 TRUE FALSE FALSE 48028.7025 95686.12739 113795.5701 79976.6194 62348.02336 67570.88395 46818.7926 49023.17491 83456.41734 48295.21634 0.994481569 1.981275469 2.356249308 1.65599464 1.290977204 1.399121674 0.969429193 1.015073099 1.728047282 1 15.55959268 -5.716818135 3.594936123 1.222983054 1.825291386 0.304726044 0.380292103 0.272260794 7.252018354 0.120388906 0.153091586 1.92E-06 5.716818135 0.602308332 SAFSNLFGGEPLSYTRFS(ph)LAR ddPTM_HeLa_A485_30min_R1 2 SAFSNLFGGEPLSYTRFSLAR 21 1 F8WBE5;P02786 F8WBE5 TFRC "Transferrin receptor protein 1;Transferrin receptor protein 1, serum form" 1 0 SAFSNLFGGEPLSYTRFS(1)LAR;SAFSNLFGGEPLSYT(0.001)RFS(0.999)LAR ; 245.2 6.70E-47 540690000 154572 149115 119293 146668 143667 105793 278010 306640 195792 311430 TRUE FALSE FALSE 188956.0081 166552.7021 163424.4449 154680.1015 129363.009 111332.1579 218610.8924 231436.0592 235085.6585 233796.2324 0.808208097 0.712384029 0.699003757 0.661602199 0.5533152 0.476193122 0.935048825 0.989904999 1.00551517 1 17.83489216 -6.88983459 6.680531849 0.990915872 0.653429671 0.786996846 0.084701473 0.108405128 5.967069857 0.039802056 0.026734192 1.29E-07 6.88983459 -0.337486201 SAFSNLFGGEPLSYTRFS(ph)LAR ddPTM_HeLa_A486_30min_R1 2 SAFSNLFGGEPLSYTRFSLAR 21 1 F8WBE5;P02786 F8WBE5 TFRC "Transferrin receptor protein 1;Transferrin receptor protein 1, serum form" 1 0 SAFSNLFGGEPLSYTRFS(0.999)LAR;SAFSNLFGGEPLSYT(0.001)RFS(0.999)LAR ; 214.19 7.81E-28 625650000 188275 215804 167230 79594 253847 249619 255520 312190 184270 282690 TRUE FALSE FALSE 175077.8948 198702.9051 231985.9346 185298.8545 222007.1422 218823.5457 191586.1934 241111.1521 200242.672 211902.584 0.826218782 0.93770874 1.094776336 0.87445302 1.047684922 1.032661054 0.904123913 1.137839603 0.944975131 1 17.69304165 -4.403644075 3.609928193 1.004467273 0.827117422 0.331581942 0.077303529 0.268871479 5.712102834 0.018415559 0.097879333 3.95E-05 4.403644075 -0.177349851 SAGAENPRPFS(ph)PPR ddPTM_HeLa_A485_30min_R1 3 SAGAENPRPFSPPR 14 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.001)AGAENPRPFS(0.999)PPR;SAGAENPRPFS(1)PPR;SAGAENPRPFS(1)PPR ;; 89.846 0.00068668 1848890000 648610 647100 663630 799260 878830 546880 698510 596860 720350 1038430 TRUE FALSE FALSE 792891.0568 722772.716 909134.3529 842921.55 791330.5994 575513.7912 549267.6322 450479.1492 864917.6376 779568.5119 1.01708964 0.927144574 1.166201994 1.0812668 1.015087946 0.738246584 0.704579038 0.577857035 1.109482521 1 19.57231629 -6.197094954 5.711505721 0.792296027 1.046510215 0.32302791 0.152175247 0.232159551 15.11872879 0.050185487 0.049926869 6.35E-07 6.197094954 0.254214188 SAGAENPRPFS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 SAGAENPRPFSPPR 14 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 SAGAENPRPFS(1)PPR;SAGAENPRPFS(1)PPR;SAGAENPRPFS(1)PPR ;; 99.11 0.00036927 2571720000 1377850 1695940 1157940 497070 1434090 1640670 1690520 1636290 1488400 1616840 TRUE FALSE FALSE 1281269.83 1561547.538 1606325.379 1157204.081 1254213.06 1438260.817 1267534.016 1263742.487 1617415.71 1211972.74 1.057177103 1.288434538 1.325380783 0.954810321 1.034852533 1.186710533 1.045843668 1.042715273 1.334531427 1 20.20892582 -5.251979139 24.99405522 1.087854718 1.230141173 0.21552492 0.120431787 1033.383574 2730205.667 0.032555511 0.055469194 5.60E-06 5.251979139 0.142286455 SAGAENPRPFS(ph)PPRAPPPPPPPPPPPPR ddPTM_HeLa_A485_30min_R1 5 SAGAENPRPFSPPRAPPPPPPPPPPPPR 28 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR ;;;; 207.34 5.26E-29 3626970000 650115 889800 828582 690032 1189720 844290 1113260 1306090 778238 1031890 TRUE FALSE FALSE 794730.8389 993854.3698 1135108.962 727726.7009 1071267.299 888495.7189 875402.9065 985769.3796 934423.2282 774658.8135 1.025910795 1.282957545 1.46530181 0.939415764 1.38288919 1.146951023 1.130049631 1.272520705 1.206238426 1 19.56320151 -10.44997826 2.597647691 0.99214688 1.211082075 0.145790871 0.14895625 8971502.608 9068568.139 512306.8044 0.036842422 3.55E-11 10.44997826 0.218935195 SAGAENPRPFS(ph)PPRAPPPPPPPPPPPPR ddPTM_HeLa_A486_30min_R1 4 SAGAENPRPFSPPRAPPPPPPPPPPPPR 28 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR;SAGAENPRPFS(1)PPRAPPPPPPPPPPPPR ;;; 218.19 1.41E-38 2688000000 653880 689650 547630 283460 846190 684890 813260 835800 557302 713690 TRUE FALSE FALSE 608046.3886 634999.6223 759687.002 659909.2053 740052.9598 600395.2353 609773.7462 645506.5854 605609.3861 534977.3787 1.136583364 1.18696537 1.420035748 1.233527307 1.383335052 1.122281538 1.139812206 1.206605384 1.132028026 1 19.02911836 -6.292107027 24.75801805 1.134287414 1.273437175 0.400711986 0.092092669 709.1251378 572475.1441 0.032731696 0.02886993 5.10E-07 6.292107027 0.139149761 SAGAGSPARPPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SAGAGSPARPPSPR 14 1 P83369 P83369 LSM11 U7 snRNA-associated Sm-like protein LSm11 1 0 S(0.001)AGAGS(0.005)PARPPS(0.994)PR 45.221 0.032918 122310000 60637 81906 64887 59567 96006 82900 101100 110330 68606 92899 TRUE FALSE FALSE 74125.49145 91484.19421 88891.40147 62820.99438 86447.30554 87240.51581 79499.15909 83271.39451 82374.59491 69740.98898 1.062868373 1.311770819 1.27459336 0.900775789 1.239548031 1.25092169 1.139920157 1.194009373 1.18115037 1 16.0897192 -10.6162651 2.420381494 0.979308211 1.175829803 0.173161533 0.113135454 9385606.295 7551652.077 1221637.395 0.030133729 2.42E-11 10.6162651 0.196521592 SAGAGSPARPPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SAGAGSPARPPSPR 14 1 P83369 P83369 LSM11 U7 snRNA-associated Sm-like protein LSm11 1 0 SAGAGS(0.142)PARPPS(0.858)PR;SAGAGSPARPPS(1)PR ; 101.3 0.0024506 269460000 266899 251146 204710 97679 302390 221740 275167 289980 230730 268400 TRUE FALSE FALSE 248190.7584 231244.2763 283979.1943 227401.6484 264461.4265 194383.9733 206317.3062 223957.8842 250729.8622 201190.893 1.233608314 1.149377454 1.411491296 1.130278041 1.314480107 0.96616686 1.025480344 1.113161142 1.246228686 1 17.61820548 -6.253392897 24.99236079 1.074484535 1.244936246 0.427061769 0.102789722 636.2988112 1976343.702 0.034144916 0.033596882 5.58E-07 6.253392897 0.170451711 SAGGRPGS(ph)GPQLGTGR ddPTM_HeLa_A485_30min_R1 5 SAGGRPGSGPQLGTGR 16 1 O14908;K7EM11;K7ESN1;O14908-2 O14908 GIPC1 PDZ domain-containing protein GIPC1 1 0 SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;S(0.001)AGGRPGS(0.999)GPQLGTGR ;;;; 203.64 1.49E-25 3192250000 343761 415932 368768 342976 516879 383144 518417 547736 362468 468434 TRUE FALSE FALSE 420229.4485 464571.6293 505190.6289 361711.9104 465416.7119 403204.8274 407652.9729 413402.8872 435212.0028 351662.0247 1.19498103 1.321074204 1.436579993 1.028578251 1.323477314 1.146569146 1.159218068 1.175568751 1.237586012 1 18.42383002 -14 0.088071133 0.270752201 1.417198657 0.322264914 0.104703927 257.4483013 1.578474089 35.49502028 2.624348081 1.00E-14 14 1.146446455 SAGGRPGS(ph)GPQLGTGR ddPTM_HeLa_A486_30min_R1 6 SAGGRPGSGPQLGTGR 16 1 O14908;K7EM11;K7ESN1;O14908-2 O14908 GIPC1 PDZ domain-containing protein GIPC1 1 0 SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR;SAGGRPGS(1)GPQLGTGR ;;;;; 177.09 2.93E-13 3864410000 526382 613218 494599 229988 681756 562868 690444 671667 477991 580513 TRUE FALSE FALSE 489485.34 564624.3724 686120.9786 535423.6869 596243.8054 493427.069 517687.6084 518743.0865 519423.6447 435148.7663 1.12486896 1.297543314 1.576750371 1.230438251 1.370206816 1.133927308 1.189679596 1.192105153 1.19366912 1 18.73114918 -6.265402117 24.76190891 1.156870511 1.328008617 0.350603051 0.12007239 376.3715216 2351820.304 0.041929396 0.038326269 5.43E-07 6.265402117 0.171138105 SAGGS(ph)S(ph)PEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_A486_30min_R1 1 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EID7;K7ENB9 Q9H6Z4-2 RANBP3 Ran-binding protein 3 3 0 S(0.098)AGGS(0.907)S(0.995)PEGGEDS(1)DREDGNYCPPVKR 134.14 4.40E-06 1992200000 782880 875860 538080 496720 885220 960530 1284500 1161300 688820 1151900 TRUE FALSE FALSE 728004.1548 806453.6638 746438.9863 1156389.263 774187.4533 842029.5746 963104.5139 896897.341 748527.4722 863456.7424 0.843127535 0.933982705 0.86447757 1.339255583 0.896614057 0.975184434 1.115405633 1.038728748 0.86689632 1 19.71976438 SAGGS(ph)SPEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_A485_30min_R1 1 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EID7;K7ENB9 Q9H6Z4-2 RANBP3 Ran-binding protein 3 2 0 S(0.002)AGGS(0.499)S(0.499)PEGGEDS(1)DREDGNYCPPVKR 151.19 2.35E-09 1211200000 421030 341690 305170 505110 583310 429920 651370 560250 420900 605680 TRUE FALSE FALSE 514686.671 381647.6732 418065.0822 532702.8803 525233.6083 452429.9464 512199.4783 422847.8091 505370.7693 454695.1227 1.131937963 0.839348509 0.919440437 1.171560577 1.155133587 0.995018252 1.12646794 0.929958972 1.111449725 1 18.79454 -5.237795738 24.9122595 1.069806089 0.951152912 0.190810281 0.099394161 1145.330969 1206783.214 0.026524271 0.045902442 5.78E-06 5.237795738 -0.118653177 SAGGSS(ph)PEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_A486_30min_R1 6 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EID7;K7ENB9 Q9H6Z4-2 RANBP3 Ran-binding protein 3 2 0 S(0.001)AGGS(0.313)S(0.685)PEGGEDS(1)DREDGNYCPPVKR;S(0.001)AGGS(0.132)S(0.867)PEGGEDS(1)DREDGNYCPPVKR;S(0.001)AGGS(0.143)S(0.855)PEGGEDS(1)DREDGNYCPPVKR;SAGGS(0.111)S(0.889)PEGGEDS(1)DREDGNYCPPVKR;S(0.027)AGGS(0.452)S(0.521)PEGGEDS(1)DREDGNYCPPVKR;SAGGS(0.12)S(0.88)PEGGEDS(1)DREDGNYCPPVKR ;;;;; 211.87 4.70E-29 4010670000 1982880 2283810 1338440 998008 2466530 2493310 2997290 2938130 1743940 2668270 TRUE FALSE FALSE 1843890.352 2102832.578 1856719.813 2323413.061 2157154.808 2185710.762 2247336.34 2269181.938 1895106.123 2000117.824 0.921890865 1.051354351 0.928305218 1.161638096 1.078513866 1.092791002 1.123601976 1.134524132 0.947497242 1 20.93165356 -5.25197898 24.99866454 1.085213748 0.975600565 0.343928526 0.06850956 740.9617757 1957952.654 0.017830804 0.030386292 5.60E-06 5.25197898 -0.109613182 SAGGSSPEGGEDS(ph)DREDGNYCPPVK ddPTM_HeLa_A486_30min_R1 1 SAGGSSPEGGEDSDREDGNYCPPVK 25 1 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EID7;K7ENB9 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 SAGGSSPEGGEDS(1)DREDGNYCPPVK 134.97 6.30E-15 0 95560 152900 83261 51692 136510 174710 176870 157380 131120 143190 TRUE FALSE FALSE 88861.73747 140783.6471 115501.889 120341.5884 119387.6429 153156.0565 132615.2553 121548.0096 142485.5872 107334.292 0.827896992 1.311637171 1.076094945 1.121184909 1.112297297 1.426907037 1.235534821 1.132424758 1.327493614 1 16.71175155 -6.043352105 24.9989752 1.23745806 1.101978347 0.159233892 0.152162937 860.0495859 495945.2359 0.047619417 0.047622497 9.05E-07 6.043352105 -0.135479713 SAGGSSPEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_A485_30min_R1 4 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EID7;K7ENB9 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR ;;; 356.23 4.56E-143 8530600000 1740550 1614540 1562860 2127160 2661460 1896830 2824450 2547560 1778410 2948510 TRUE FALSE FALSE 2127729.343 1803346.408 2141026.95 2243361.365 2396475.697 1996145.086 2220983.184 1922766.916 2135320.574 2213500.72 0.961250802 0.81470333 0.967258303 1.013490235 1.082663166 0.901804579 1.003380375 0.868654299 0.964680316 1 21.07789841 -4.90444072 10.85645882 0.974656586 0.888132649 0.225497169 0.064825386 0.550804983 58.49265906 0.017119548 0.035690912 1.25E-05 4.90444072 -0.086523936 SAGGSSPEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_A486_30min_R1 8 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7EID7;K7ENB9 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSS(0.003)PEGGEDS(0.997)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(0.999)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR;SAGGSSPEGGEDS(1)DREDGNYCPPVKR ;;;;;;; 323.24 7.48E-107 11487690000 2260478 2739595 1643725 1161250 2965647 2761113 3297646 3411407 2157985 2951669 TRUE FALSE FALSE 2102030.165 2522499.515 2280219.34 2703448.686 2593667.9 2420474.951 2472540.092 2634704.097 2345040.877 2212551.87 0.950047858 1.140086047 1.03058345 1.221869066 1.172251794 1.093974331 1.117506046 1.190798793 1.059880633 1 21.07727985 -3.542232582 1.611765128 1.124712518 1.02E-10 0.322049116 0.068458018 10.6415659 4.701561818 0.017983022 33.08749915 0.000286924 3.542232582 -1.124712518 SAGIARPEEGRPVVSGTGNDITT(ph)PPNK ddPTM_HeLa_A485_30min_R1 2 SAGIARPEEGRPVVSGTGNDITTPPNK 27 2 E7EVA0;B5MEG9;P27816-4;H7C4C5 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 SAGIARPEEGRPVVSGTGNDIT(0.155)T(0.845)PPNK;SAGIARPEEGRPVVSGTGNDIT(0.075)T(0.925)PPNK ; 173.64 3.42E-14 856300000 916120 751970 618690 1171490 973610 725820 972560 818290 763800 1550910 TRUE FALSE FALSE 1119907.733 839906.3502 847569.1768 1235485.532 876673.9698 763822.8129 764764.6109 617603.0945 917087.654 1164296.679 0.961874884 0.721385163 0.72796667 1.061143224 0.752964417 0.656037955 0.656846854 0.53045165 0.787675229 1 20.15102729 -5.990507736 24.99053434 0.693851973 0.855035586 0.153921574 0.148301147 325.8738375 857930.5525 0.04493878 0.050891838 1.02E-06 5.990507736 0.161183613 SAGLAFSLYQAMAK ddPTM_HeLa_A485_30min_R1 2 SAGLAFSLYQAMAK 14 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PLA6 P50454 SERPINH1 Serpin H1 0 0 ; ; 195.25 9.44E-15 37604000 68201 74454 60702 81085 106568 76351 106591 110148 61285 114753 FALSE FALSE TRUE 83372.07716 83160.74764 83158.19582 85514.46823 95957.71574 80348.6203 83816.96208 83134.03029 73584.33736 86147.18897 0.967786392 0.96533327 0.965303648 0.992655352 1.113880985 0.932689984 0.972950633 0.965023134 0.854169918 1 16.3945161 -9.483981814 5.405792492 0.99999999 0.973447558 0.019038328 0.06017828 16396985.71 7191761.304 0.071034768 0.014900842 3.28E-10 9.483981814 -0.026552432 SAGLAFSLYQAMAK ddPTM_HeLa_A486_30min_R1 2 SAGLAFSLYQAMAK 14 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PJH8;E9PIG2;E9PRS3;E9PNX1;E9PLA6 P50454 SERPINH1 Serpin H1 0 0 ; ; 192.68 2.53E-11 45421000 90523 92501 67294 42722 104107 103339 126180 112240 84589 112737 FALSE FALSE TRUE 84177.80516 85170.88388 93352.039 99458.97505 91048.9293 90590.08485 94608.4294 86685.40218 91921.24263 84506.92141 0.996105452 1.0078569 1.104667374 1.176932888 1.077413871 1.071984204 1.119534682 1.025778726 1.08773626 1 16.36678189 -4.739815692 11.03668912 1.087991626 1.001841148 0.326748566 0.046080005 0.533895322 263.7618606 0.011804381 0.030401386 1.82E-05 4.739815692 -0.086150478 SAGS(ph)FKR ddPTM_HeLa_A485_30min_R1 3 SAGSFKR 7 1 H0Y465;P21359-2;P21359-6;P21359 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(0.034)AGS(0.966)FKR;S(0.034)AGS(0.966)FKR;SAGS(1)FKR ;; 91.087 0.0038583 1658640000 1042540 1086940 658671 1386710 1174530 1123230 1664550 1923230 979160 1981760 TRUE FALSE FALSE 1274449.426 1214048.178 902340.8125 1462462.456 1057589.669 1182040.586 1308905.294 1451554.827 1175668.431 1487743.704 0.856632378 0.816033148 0.606516304 0.983006987 0.710868187 0.794518964 0.879792192 0.975675329 0.790235864 1 20.50469458 -7.721052844 0.452412972 0.99557944 0.779869872 0.23744355 0.104282495 1.426023257 0.787099017 0.12247958 0.073269111 1.90E-08 7.721052844 -0.215709568 SAGS(ph)FKR ddPTM_HeLa_A486_30min_R1 1 SAGSFKR 7 1 H0Y465;P21359-2;P21359-6;P21359 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(0.001)AGS(0.999)FKR 74.165 0.010351 819680000 1005700 721560 471760 392740 584110 986920 986920 867080 656430 1131200 TRUE FALSE FALSE 935205.6234 664380.9577 654438.1062 914318.568 510845.4772 865163.8447 739982.1774 669664.8122 713329.8809 847940.1571 1.102914652 0.783523403 0.771797515 1.078281952 0.602454634 1.020312386 0.872682077 0.789754804 0.841250264 1 19.69360293 -4.25047896 24.30086784 0.856732953 1.102914864 0.22506556 0.13363343 1572.364122 3486066.107 0.031032253 0.438537957 5.62E-05 4.25047896 0.246181911 SAHVTVSGGT(ph)PK ddPTM_HeLa_A485_30min_R1 1 SAHVTVSGGTPK 12 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 SAHVTVSGGT(1)PK 172.43 1.36E-10 264200000 474870 509090 417020 447070 712070 543620 736360 760490 443480 840250 TRUE FALSE FALSE 580503.1932 568623.647 571293.0517 471492.3021 641173.8106 572083.1026 579030.6705 573978.6351 532482.3682 630791.1387 0.920277977 0.901445205 0.905677041 0.747461835 1.016459762 0.906929517 0.917943571 0.909934525 0.844150045 1 19.26680287 -5.790509053 24.99999495 0.92605291 0.873693085 0.187246459 0.063983287 436.8730158 375709.6662 0.019806923 0.022462451 1.62E-06 5.790509053 -0.052359825 SAHVTVSGGT(ph)PK ddPTM_HeLa_A486_30min_R1 2 SAHVTVSGGTPK 12 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 SAHVTVSGGT(1)PK;SAHVTVSGGT(1)PK ; 142.19 2.98E-07 690400000 1068890 1074080 763790 126001 1111110 973180 1234930 1063870 945280 670370 TRUE FALSE FALSE 993966.3308 988965.9891 1059549.943 293336.6957 971744.2231 853118.9462 925937.4522 821650.0251 1027217.632 502504.9886 1.978022812 1.968071982 2.108536168 0.583748823 1.933800151 1.697732292 1.842643303 1.635108195 2.044193898 1 18.93877839 SAIRHS(ph)PSK ddPTM_HeLa_A485_30min_R1 1 SAIRHSPSK 9 1 O94964-2;H0YDM2;O94964 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 S(0.007)AIRHS(0.989)PS(0.004)K 44.616 0.031737 20835000 54126 28187 14908 50854 17712 74961 30366 50321 30435 42140 TRUE FALSE FALSE 66166.14197 31483.22446 20423.08957 53632.02525 15948.53109 78885.84205 23878.05603 37979.69585 36543.02533 31635.27353 2.091530579 0.995193686 0.645579674 1.695323582 0.504137607 2.493603919 0.754792147 1.200548995 1.155135431 1 14.94924645 -3.809966341 0.029812454 4.42E-06 2.72436683 0.034388432 0.602444313 4351.509061 17.79853435 630.4286811 1034.341695 0.000154894 3.809966341 2.72436241 SALAPNLLT(ph)SGK ddPTM_HeLa_A485_30min_R1 1 SALAPNLLTSGK 12 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 SALAPNLLT(0.64)S(0.36)GK 94.122 0.0083633 157210000 382790 347850 272480 485590 568310 399700 602290 607310 332110 700460 TRUE FALSE FALSE 467940.3149 388528.0316 373281.6908 512116.5521 511727.0609 420627.6739 473605.8212 458366.2703 398761.4307 525848.213 0.889877161 0.738859659 0.709865854 0.973886645 0.973145954 0.799903211 0.900651195 0.871670301 0.758320407 1 19.0042869 SALAPNLLTS(ph)GK ddPTM_HeLa_A485_30min_R1 1 SALAPNLLTSGK 12 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 SALAPNLLT(0.072)S(0.928)GK 132.31 2.40E-05 130980000 392280 343960 263580 498380 605180 391940 582250 674910 282000 643320 TRUE FALSE FALSE 479541.3327 384183.1299 361089.2105 525605.2374 544926.1543 412461.3723 457847.531 509387.2643 338594.8133 482952.1634 0.992937539 0.795488993 0.747670759 1.088317389 1.128323249 0.854041877 0.948018387 1.054736479 0.701093895 1 18.88152077 -5.254876707 24.99264554 0.971196409 0.840378094 0.157668018 0.129350923 949.618067 3616424.735 0.035572877 0.059775266 5.56E-06 5.254876707 -0.130818315 SALAPNLLTS(ph)GK ddPTM_HeLa_A486_30min_R1 1 SALAPNLLTSGK 12 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 SALAPNLLT(0.041)S(0.959)GK 132.97 2.23E-05 359020000 485950 460780 208750 232690 466440 545330 602870 585660 369250 627480 TRUE FALSE FALSE 451887.4144 424266.1147 289583.5905 541714.0795 407934.7458 478052.7291 452025.5495 452318.0029 401256.8873 470354.9238 0.960737077 0.9020127 0.615670371 1.151713423 0.867291327 1.01636595 0.961030759 0.961652531 0.853093838 1 18.84339028 -5.270594228 24.99999367 0.968324323 0.833727307 0.258722364 0.113520741 940.750878 2568994.558 0.031148267 0.046922007 5.36E-06 5.270594228 -0.134597017 SALASVIMGLSPILGK ddPTM_HeLa_A485_30min_R1 1 SALASVIMGLSPILGK 16 0 P30153;B3KQV6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 0 98.407 0.0012211 4022000 8819.2 7748.6 7396.5 12090 13717 9274.1 13154 10012 7033.7 17152 FALSE FALSE TRUE 10781.00061 8654.731366 10132.77314 12750.44609 12351.28732 9759.677536 10343.54044 7556.541302 8445.299073 12876.32206 0.837273296 0.672143126 0.786930701 0.990224229 0.959224789 0.757955377 0.803299296 0.586855568 0.655878211 1 13.65243295 -6.496351133 21.6618187 0.734729075 0.845193391 0.088591545 0.13061215 297.6404897 243046.6833 0.048335231 0.042414548 3.19E-07 6.496351133 0.110464316 SALASVIMGLSPILGK ddPTM_HeLa_A486_30min_R1 2 SALASVIMGLSPILGK 16 0 P30153;B3KQV6 P30153 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 0 ; ; 214.81 1.58E-24 21957700 47269 49252 32565 20475.9 51143 52739 65487 55818 48399 60148 FALSE FALSE TRUE 43955.6872 45349.09215 45175.04012 47668.92999 44728.16805 46232.59839 49101.45995 43109.4599 52594.26429 45086.5493 0.974917972 1.005823086 1.001962688 1.057276078 0.99205126 1.025418869 1.089048967 0.956149019 1.166517844 1 15.46040948 -3.637939816 0.412304491 1.048013702 0.882358361 0.14360628 0.054742462 18.18225012 1.64294542 0.038823567 1.642580636 0.000230176 3.637939816 -0.165655341 SALLALGLK ddPTM_HeLa_A486_30min_R1 1 SALLALGLK 9 0 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 0 145.63 0.00044978 12724000 16924 18582 14424 7247.1 20187 20321 19899 18908 17428 23511 FALSE FALSE TRUE 15737.715 17109.49465 20009.35909 16871.61505 17654.95822 17814.00163 14920.05973 14603.06116 18938.67307 17623.69257 0.892986242 0.970823485 1.135367007 0.957325769 1.001774069 1.010798478 0.846591012 0.828603943 1.074614358 1 14.10522861 -6.717293401 24.98185618 0.923168981 0.998750767 0.084168085 0.087261589 263.5363651 149132.559 0.033521582 0.025965544 1.92E-07 6.717293401 0.075581787 SALLTQNGTGS(ph)LPR ddPTM_HeLa_A485_30min_R1 4 SALLTQNGTGSLPR 14 0 Q86UU1-3;Q86UU1-2;Q86UU1;A0A087WZL0 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 SALLTQNGT(0.061)GS(0.939)LPR;SALLT(0.001)QNGT(0.009)GS(0.991)LPR;SALLTQNGT(0.001)GS(0.999)LPR;SALLTQNGT(0.011)GS(0.989)LPR ;;; 221.78 9.59E-28 2144230000 819690 959060 827785 738311 1117820 826325 1172940 1106420 691924 1064440 TRUE FALSE FALSE 1002027.213 1071213.724 1134017.119 778643.0604 1006525.916 869590.0993 922331.787 835068.7602 830786.8001 799094.6976 1.253953024 1.340534141 1.419127322 0.974406491 1.259582774 1.088219083 1.154220882 1.045018523 1.039660009 1 19.60800696 -5.57388 0.41497463 1.010460932 1.402979749 0.507990227 0.101974344 1.667925275 0.474107934 0.095246131 0.293558204 2.67E-06 5.57388 0.392518818 SALLTQNGTGS(ph)LPR ddPTM_HeLa_A486_30min_R1 3 SALLTQNGTGSLPR 14 0 Q86UU1-3;Q86UU1-2;Q86UU1;A0A087WZL0 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 SALLTQNGTGS(1)LPR;SALLTQNGT(0.009)GS(0.991)LPR;SALLTQNGT(0.053)GS(0.947)LPR ;; 252.01 5.49E-42 1214790000 1101220 943860 751690 354565 1176320 863950 1115600 1037890 879720 1074130 TRUE FALSE FALSE 1024030.165 869065.0961 1042764.499 825445.2387 1028774.977 757364.633 836465.0804 801585.104 955974.8379 805160.8566 1.271833021 1.079368289 1.295100837 1.025192956 1.27772602 0.940637671 1.038879466 0.995558959 1.187309132 1 19.61891751 -6.26269935 24.99618634 1.032599633 1.180406968 0.38031802 0.100075392 127.5318832 2530034.845 0.032165984 0.029895194 5.46E-07 6.26269935 0.147807335 SALS(ph)PS(ph)KSPAK ddPTM_HeLa_A486_30min_R1 1 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 2 0 SALS(0.999)PS(0.772)KS(0.228)PAK 110.44 0.0006015 499970000 1989400 1728100 579790 1556500 1162500 2555300 3436200 2756500 1368300 5018400 TRUE FALSE FALSE 1849953.333 1591159.062 804300.2153 3623610.661 1016688.41 2240053.066 2576426.416 2128905.124 1486905.346 3761759.976 0.491778674 0.422982613 0.213809552 0.963275351 0.270269346 0.595480063 0.684899205 0.56593327 0.395268533 1 21.84297637 -14 0.239951729 3.718441839 0.468234652 0.336202443 0.204088066 198.9932304 1.986676413 264.4849329 0.315814217 1.00E-14 14 -3.250207187 SALS(ph)PSKS(ph)PAK ddPTM_HeLa_A485_30min_R1 2 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 2 0 SALS(0.993)PS(0.009)KS(0.998)PAK;SALS(0.985)PS(0.018)KS(0.997)PAK ; 123.76 7.46E-05 1762270000 2718600 1398730 958760 6521600 2269370 2053410 3947600 2639200 1685970 8166000 TRUE FALSE FALSE 3323343.191 1562299.306 1313445.221 6877858.494 2043423.555 2160923.372 3104163.011 1991932.062 2024328.714 6130366.484 0.542111666 0.254845988 0.214252317 1.121932679 0.333328123 0.352494974 0.506358473 0.324928708 0.330213327 1 22.54754189 -10.22214226 4.975135138 1.000073226 0.44263353 0.314784409 0.246858583 0.000207329 3.24E-05 0.240683493 0.058366491 6.00E-11 10.22214226 -0.557439696 SALS(ph)PSKS(ph)PAK ddPTM_HeLa_A486_30min_R1 4 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 2 0 S(0.003)ALS(0.989)PS(0.01)KS(0.998)PAK;SALS(1)PS(0.005)KS(0.996)PAK;SALS(0.985)PS(0.015)KS(1)PAK;S(0.007)ALS(0.976)PS(0.024)KS(0.992)PAK ;;; 147.83 8.68E-07 4553920000 6505030 5568770 1615440 5050720 3482260 8172270 10841300 9082000 4269110 15263300 TRUE FALSE FALSE 6049060.989 5127480.384 2240981.631 11758331.41 3045482.48 7164058.417 8128692.072 7014226.859 4639159.892 11441270.33 0.528705363 0.448156563 0.195868253 1.027712052 0.266183946 0.626159352 0.710471113 0.613063642 0.405475944 1 23.44774391 -14 0.211836791 3.178559595 0.477525233 0.273824126 0.224419958 197.4363858 1.970167222 183.4778799 0.45831697 1.00E-14 14 -2.701034362 SALSGHLETVILGLLK ddPTM_HeLa_A485_30min_R1 3 SALSGHLETVILGLLK 16 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;; ;; 220.85 7.26E-25 545316000 1025040 1144240 808140 782659 1296890 1302550 1944410 1999240 1064580 1949350 FALSE FALSE TRUE 1253056.612 1278048.914 1107104.616 825413.6794 1167767.078 1370749.504 1528970.919 1508923.255 1278231.441 1463412.92 0.856256354 0.873334448 0.756522373 0.564033342 0.797975105 0.936679925 1.044798018 1.031098765 0.873459174 1 20.48090547 -6.296795514 3.5554465 0.988758191 0.761091516 0.578701415 0.089381452 0.187578518 5.00235213 0.035532849 0.032229675 5.05E-07 6.296795514 -0.227666676 SALSGHLETVILGLLK ddPTM_HeLa_A486_30min_R1 3 SALSGHLETVILGLLK 16 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;; ;; 190.86 3.48E-14 892980000 884740 1017820 868840 102938 4111010 1123760 1277760 1203270 1111060 961250 FALSE FALSE TRUE 822724.2948 937164.2364 1205278.116 239644.8662 3595368.792 985121.9168 958050.9332 929311.6882 1207367.575 720546.7433 1.141805584 1.300629342 1.672727172 0.332587536 4.9897787 1.36718669 1.329616631 1.2897313 1.675626997 1 19.4587325 SALSPSKS(ph)PAK ddPTM_HeLa_A485_30min_R1 4 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 1 0 SALS(0.003)PS(0.042)KS(0.955)PAK;SALSPS(0.1)KS(0.9)PAK;SALSPSKS(1)PAK;SALSPS(0.001)KS(0.999)PAK ;;; 153.79 2.13E-07 3804300000 2423070 1565690 969890 4551120 2474220 2032560 3556800 2662100 1835720 6423460 TRUE FALSE FALSE 2962073.562 1748783.826 1328692.671 4799736.162 2227877.969 2138981.699 2796860.624 2009215.801 2204132.166 4822209.637 0.614256489 0.36265197 0.275536066 0.99533959 0.46200355 0.443568791 0.579995652 0.416658742 0.457079292 1 22.20126294 -10.77863266 4.423399716 1.051351814 0.510500729 0.382432451 0.186070739 0.081822785 0.004094787 0.156439448 0.043745636 1.66E-11 10.77863266 -0.540851085 SALSPSKS(ph)PAK ddPTM_HeLa_A486_30min_R1 3 SALSPSKSPAK 11 1 P49792;Q7Z3J3 P49792 RANBP2;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 4 1 0 SALSPS(0.004)KS(0.996)PAK;SALS(0.002)PS(0.018)KS(0.981)PAK;SALSPSKS(1)PAK ;; 145.86 4.39E-07 2644810000 2763420 2593140 943990 1809510 2009030 3578270 4224660 3943560 2163760 5427980 TRUE FALSE FALSE 2569718.528 2387650.142 1309528.209 4212630.728 1757038.724 3136819.429 3167605.384 3045697.475 2351316.459 4068778.478 0.631570026 0.586822349 0.321847998 1.035355144 0.431834452 0.770948688 0.778515076 0.74855328 0.577892474 1 21.95616431 -14 0.104981032 2.060461685 0.44815199 0.251113251 0.186001195 246.9386702 1.741110968 57.22312588 2.619981931 1.00E-14 14 -1.612309695 SALSS(ph)SLRDLSEAGK ddPTM_HeLa_A485_30min_R1 1 SALSSSLRDLSEAGK 15 1 A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SALS(0.05)S(0.475)S(0.475)LRDLSEAGK 129.12 7.54E-06 0 154080 159320 111440 239630 274190 205600 314110 352750 159240 321190 TRUE FALSE FALSE 188354.5644 177951.0881 152666.2934 252720.3801 246890.6809 216364.8981 246997.8325 266237.5094 191198.0074 241123.2441 0.781154738 0.73800885 0.633146315 1.048096301 1.023919041 0.897320783 1.024363426 1.104155306 0.792947225 1 17.87941121 -5.264897026 24.99914613 0.988423538 0.719493851 0.657921007 0.088176977 172.5392412 1247479.041 0.024106318 0.037438961 5.43E-06 5.264897026 -0.268929687 SALSS(ph)SLRDLSEAGVHH ddPTM_HeLa_A486_30min_R1 1 SALSSSLRDLSEAGVHH 17 1 A0A0C4DGT3 A0A0C4DGT3 IQSEC1 1 0 SALS(0.001)S(0.719)S(0.28)LRDLSEAGVHH 200.99 2.85E-25 315280000 114310 132340 131600 20234 221630 115450 162350 157720 130180 88447 TRUE FALSE FALSE 106297.4593 121852.8964 182559.0444 47105.77457 193831.0988 101206.9528 121728.3128 121810.599 141464.1072 66299.29551 1.603296965 1.837921436 2.75355934 0.710501887 2.92357705 1.526516263 1.836042328 1.837283459 2.133719614 1 16.01670592 -10.18306386 3.735784645 0.999201864 1.909195788 0.175200896 0.590323447 93719015.75 162399096.3 895877.8059 0.135928635 6.56E-11 10.18306386 0.909993924 SALSSS(ph)LR ddPTM_HeLa_A485_30min_R1 3 SALSSSLR 8 0 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SALSS(0.012)S(0.988)LR;SALSS(0.004)S(0.996)LR;S(0.009)ALS(0.015)S(0.088)S(0.888)LR ;; 122.44 0.00066445 1505020000 1790240 2296310 2047530 1839720 1990180 1807450 2054990 1969350 1705320 2213240 TRUE FALSE FALSE 2188472.712 2564843.479 2804996.552 1940219.245 1792030.691 1902085.287 1615924.599 1486363.825 2047562.082 1661520 1.31715099 1.54367295 1.688211127 1.167737521 1.078548974 1.144786273 0.972558019 0.89458076 1.232342724 1 20.66407223 -5.423749393 4.66097034 1.054010981 1.516468924 0.743888771 0.121344491 0.111724646 3.974120081 0.035533528 0.053156215 3.77E-06 5.423749393 0.462457944 SALSSS(ph)LR ddPTM_HeLa_A486_30min_R1 4 SALSSSLR 8 0 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SALSS(0.004)S(0.996)LR;SALSS(0.002)S(0.998)LR;SALSS(0.012)S(0.988)LR;SALSS(0.01)S(0.99)LR ;;; 121.73 0.00069657 1926430000 3944920 4356440 2996640 1086980 3448860 3439760 3736630 3414720 3640370 4144990 TRUE FALSE FALSE 3668401.48 4011219.829 4157019.261 2530544.373 3016271.819 3015397.384 2801685.652 2637262.799 3955920.203 3107057.525 1.180667384 1.291002756 1.337928 0.814450442 0.97078081 0.970499374 0.901716698 0.848797545 1.273204687 1 21.56711752 -5.252425884 24.9727288 0.959589294 1.271979734 0.559087547 0.122462356 452.6761259 1254178.676 0.032518839 0.055290742 5.59E-06 5.252425884 0.31239044 SALSSS(ph)LRDLSEAGKR ddPTM_HeLa_A486_30min_R1 1 SALSSSLRDLSEAGKR 16 2 A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SALSS(0.006)S(0.994)LRDLSEAGKR 154.56 1.27E-08 405170000 141670 121630 99705 73116 208100 141680 202600 192440 103600 176960 TRUE FALSE FALSE 131739.6646 111991.5958 138313.4462 170217.7431 181998.1575 124200.9621 151907.3371 148625.6129 112580.1314 132648.0642 0.993151807 0.844276142 1.042709873 1.283228249 1.372037795 0.936319447 1.145190758 1.120450674 0.848712962 1 17.0172441 -4.969526883 7.747621875 1.1160283 0.923488941 0.183942088 0.149241482 0.320209137 65.41324399 0.040460494 0.0838673 1.07E-05 4.969526883 -0.192539359 SALSSS(ph)LRDLSEAGVHH ddPTM_HeLa_A485_30min_R1 1 SALSSSLRDLSEAGVHH 17 1 A0A0C4DGT3 A0A0C4DGT3 IQSEC1 1 0 SALS(0.001)S(0.314)S(0.685)LRDLSEAGVHH 214.52 1.83E-26 272640000 72805 117850 116000 63748 187830 129320 166640 208290 120170 134640 TRUE FALSE FALSE 89000.22108 131631.5323 158913.2272 67230.39182 169128.9857 136090.9952 131036.0027 157206.5509 144287.0167 101076.7259 0.880521409 1.302293196 1.572203945 0.665142161 1.673273291 1.346412778 1.296401338 1.555318987 1.427499907 1 16.62509131 -5.807322303 24.9999955 1.404742137 1.152490395 0.181414983 0.280059705 231.75271 126272.5821 0.08433881 0.095631551 1.56E-06 5.807322303 -0.252251742 SALVTSSSS(ph)LPSFPSTLSWSR ddPTM_HeLa_A485_30min_R1 1 SALVTSSSSLPSFPSTLSWSR 21 0 F8VXI9;Q14161-4;Q14161-3;Q14161;Q14161-6 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 SALVTSS(0.001)S(0.017)S(0.488)LPS(0.488)FPS(0.003)T(0.003)LSWSR 172.95 6.27E-14 71433000 37311 41299 32157 49563 50965 50217 80947 87093 34387 70657 TRUE FALSE FALSE 45610.70323 46128.5588 44053.21246 52270.50119 45890.74565 52846.28447 63652.01217 65733.30519 41288.15548 53043.51025 0.859873395 0.86963624 0.830510882 0.985426887 0.86515288 0.996281811 1.199996227 1.239233695 0.77838279 1 15.69488863 -6.455553806 4.44172598 1.077480313 0.885781801 0.298529519 0.123095831 0.255801914 9.803780313 0.045157696 0.038564255 3.50E-07 6.455553806 -0.191698512 SAMDSPVPASMFAPEPS(ph)SPGAAR ddPTM_HeLa_A485_30min_R1 3 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 SAMDSPVPASMFAPEPS(0.67)S(0.33)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.553)S(0.447)PGAAR ;; 132.62 5.19E-07 108419000 135426 176359 167927 140941 207744 170546 200742 218649 172554 197945 TRUE FALSE FALSE 165551.0465 196982.6509 230050.1853 148640.2499 187060.2779 179475.5248 157851.8318 165024.9899 207184.005 148600.9544 1.11406449 1.325581331 1.548107051 1.000264437 1.258809398 1.207768319 1.062253149 1.110524428 1.394230649 1 17.18108386 -5.274884784 24.92004088 1.155871112 1.328884019 0.235132979 0.149549954 1113.346749 2063502.101 0.041684935 0.062229237 5.31E-06 5.274884784 0.173012907 SAMDSPVPASMFAPEPS(ph)SPGAAR ddPTM_HeLa_A486_30min_R1 3 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR ;; 108.13 1.25E-07 44242000 162773 184005 151516 51107 221908 161689 162628 174648 150281 163034 TRUE FALSE FALSE 151363.4533 169423.7737 210187.0529 118979.6788 194074.2294 141741.4551 121936.7543 134884.4629 163307.4781 122209.2252 1.238559961 1.386341934 1.719895143 0.973573628 1.588048931 1.159826149 0.997770455 1.10371752 1.336294194 1 16.89899367 -6.47389373 13.53266244 1.112478163 1.377383472 0.291951738 0.204960582 3.329590497 918.8214876 0.070185861 0.061829413 3.36E-07 6.47389373 0.264905309 SAMDSPVPASMFAPEPSS(ph)PGAAR ddPTM_HeLa_A485_30min_R1 5 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 SAMDSPVPASMFAPEPS(0.063)S(0.937)PGAAR;SAMDSPVPASMFAPEPS(0.003)S(0.997)PGAAR;SAMDSPVPASMFAPEPS(0.116)S(0.884)PGAAR;SAMDSPVPASMFAPEPS(0.293)S(0.707)PGAAR;SAMDSPVPASMFAPEPS(0.239)S(0.761)PGAAR ;;;; 383.11 2.50E-171 1582430000 770666 1120551 1034773 830247 1318596 1075865 1227650 1337381 985156 1089322 TRUE FALSE FALSE 942097.9929 1251589.692 1417578.593 875601.2913 1187311.952 1132195.628 965352.5485 1009386.213 1182867.773 817774.0729 1.152027221 1.530483459 1.733459937 1.070712952 1.451882606 1.384484622 1.180463627 1.234309385 1.446448123 1 19.6413428 -13.18735456 0.158208213 3.60E-17 1.464426964 0.236825488 0.189862593 142.5890486 1.649719443 46.01147391 0.866959911 6.50E-14 13.18735456 1.464426964 SAMDSPVPASMFAPEPSS(ph)PGAAR ddPTM_HeLa_A486_30min_R1 6 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 SAMDSPVPASMFAPEPS(0.168)S(0.832)PGAAR;SAMDSPVPASMFAPEPS(0.479)S(0.521)PGAAR;SAMDSPVPASMFAPEPS(0.003)S(0.997)PGAAR;SAMDSPVPASMFAPEPS(0.059)S(0.941)PGAAR;SAMDSPVPASMFAPEPS(0.047)S(0.953)PGAAR;SAMDSPVPASMFAPEPS(0.011)S(0.989)PGAAR ;;;;; 321.26 2.53E-105 2651231000 893700 965647 769186 307853 1080982 810226 902902 923923 826963 970689 TRUE FALSE FALSE 831056.2451 889125.6149 1067035.419 716697.342 945395.1578 710268.5539 676986.3697 713565.902 898644.8187 727622.1563 1.142153572 1.221960611 1.466469114 0.984985594 1.299294077 0.976150256 0.930409229 0.980681932 1.235043231 1 19.47282995 -6.267449946 24.70306054 1.017371562 1.223222458 0.344991957 0.136593156 485.9756266 1997323.549 0.047356205 0.042858625 5.40E-07 6.267449946 0.205850897 SAMPFT(ph)ASPASSTTAR ddPTM_HeLa_A485_30min_R1 4 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 S(0.179)AMPFT(0.516)AS(0.305)PASSTTAR;SAMPFT(0.836)AS(0.163)PAS(0.001)STTAR;SAMPFT(0.508)AS(0.492)PASSTTAR;SAMPFT(0.772)AS(0.228)PASSTTAR ;;; 178.47 6.84E-17 2582840000 1325658 1582988 1547888 1376823 2371750 1529185 1988820 2096230 1467153 1738760 TRUE FALSE FALSE 1620546.049 1768104.676 2120516.184 1452035.354 2135610.242 1609250.762 1563892.36 1582126.306 1761597.15 1305319.132 1.241494137 1.354538238 1.624519348 1.112398738 1.636082848 1.232840861 1.198091962 1.212060919 1.349552847 1 20.31597114 -6.489545301 24.6955736 1.208722108 1.39337402 0.254572383 0.167146919 810.5835408 600533.6879 0.055872209 0.049238949 3.24E-07 6.489545301 0.184651911 SAMPFT(ph)ASPASSTTAR ddPTM_HeLa_A486_30min_R1 2 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SAMPFT(0.588)AS(0.407)PAS(0.005)STTAR;SAMPFT(0.541)AS(0.457)PAS(0.001)STTAR ; 201.7 1.73E-24 771730000 874270 814650 691230 310754 1032190 765110 914410 950310 610670 793430 TRUE FALSE FALSE 812988.1877 750094.1671 958892.7678 723451.0166 902723.1054 670718.5073 685614.9464 733945.1581 663603.3673 594749.9636 1.366941131 1.261192456 1.612262003 1.216395226 1.517819522 1.127731901 1.152778459 1.234039854 1.115768656 1 19.18192375 -6.278759149 24.88600155 1.142360909 1.389648927 0.556723308 0.119465137 621.2015576 892573.9489 0.039780532 0.035162394 5.26E-07 6.278759149 0.247288017 SAMPFTAS(ph)PASSTTAR ddPTM_HeLa_A485_30min_R1 6 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SAMPFT(0.043)AS(0.918)PAS(0.002)S(0.026)T(0.009)TAR;SAMPFT(0.017)AS(0.514)PAS(0.004)S(0.362)T(0.099)T(0.003)AR;SAMPFT(0.256)AS(0.743)PASSTTAR;SAMPFT(0.091)AS(0.671)PAS(0.205)S(0.019)T(0.005)T(0.01)AR;SAMPFT(0.391)AS(0.604)PAS(0.005)STTAR;SAMPFT(0.072)AS(0.927)PAS(0.001)STTAR ;;;;; 202.26 3.43E-25 2774320000 1322032 1604632 1490548 1360385 2227470 1504702 1824520 2060800 1401931 1825990 TRUE FALSE FALSE 1616113.457 1792279.754 2041963.732 1434699.388 2005695.266 1583485.87 1434696.397 1555385.569 1683285.692 1370804.298 1.178952721 1.307465812 1.489609958 1.046611387 1.463152157 1.155150938 1.046609205 1.134651803 1.227954782 1 20.38659119 -6.501773635 24.20370674 1.111718504 1.295968341 0.335060442 0.131228158 610.5248221 700162.3667 0.044751993 0.039028499 3.15E-07 6.501773635 0.184249837 SAMPFTAS(ph)PASSTTAR ddPTM_HeLa_A486_30min_R1 6 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SAMPFT(0.409)AS(0.572)PAS(0.001)S(0.013)T(0.004)T(0.001)AR;SAMPFT(0.194)AS(0.764)PAS(0.002)S(0.031)T(0.007)T(0.002)AR;SAMPFT(0.406)AS(0.582)PASS(0.011)TTAR;SAMPFT(0.16)AS(0.83)PAS(0.01)STTAR;SAMPFT(0.009)AS(0.991)PAS(0.001)STTAR;SAMPFT(0.356)AS(0.644)PASSTTAR ;;;;; 263.59 7.72E-51 2844810000 1695090 1776620 1435490 614467 2140840 1641710 1955350 1955270 1438510 1786770 TRUE FALSE FALSE 1576272.944 1635834.161 1991350.172 1430510.229 1872315.885 1439172.512 1466100.748 1510097.704 1563201.205 1339351.162 1.176892953 1.221363155 1.486802138 1.068062111 1.397927547 1.074529632 1.094635067 1.127484522 1.167133198 1 20.35310284 -6.286556888 24.90175054 1.10084166 1.268298407 0.373974942 0.114544469 841.8770917 834642.4095 0.038748517 0.034187776 5.17E-07 6.286556888 0.167456746 SAMPFTASPAS(ph)STTAR ddPTM_HeLa_A486_30min_R1 1 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SAMPFT(0.019)AS(0.323)PAS(0.604)S(0.046)T(0.002)T(0.006)AR 214.73 1.84E-26 1100000000 702140 702940 620730 240850 804420 660540 778000 754270 598440 724700 TRUE FALSE FALSE 652923.6119 647236.4743 861093.2797 560710.9719 703522.1427 579049.2907 583336.1712 582539.1866 650313.261 543230.403 1.201927595 1.191458488 1.585134549 1.032178922 1.295071371 1.065936824 1.073828283 1.072361163 1.197122358 1 19.0512047 -5.915822814 1.379123154 1.087301045 1.291638736 0.281074018 0.138723136 0.555925174 2.199209282 0.055499952 0.067302484 1.21E-06 5.915822814 0.204337692 SANAFLTPSYTWT(ph)PLKTEVDESQATK ddPTM_HeLa_A486_30min_R1 1 SANAFLTPSYTWTPLKTEVDESQATK 26 1 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 SANAFLTPS(0.032)YT(0.024)WT(0.944)PLKTEVDESQATK 108.9 0.00054611 129910000 95374 78849 34545 45926 75145 94515 134630 124060 66218 126630 TRUE FALSE FALSE 88688.77511 72600.71808 47921.74915 106918.049 65719.6134 82854.70026 100944.15 95814.24621 71957.82956 94921.02378 0.9343428 0.76485393 0.504859169 1.126389547 0.692360984 0.87288039 1.06345408 1.009410164 0.758081052 1 16.53444004 -6.526404015 24.37020566 0.959898641 0.801488161 0.156829281 0.167321371 144.9527271 1002031.325 0.062862182 0.048956392 2.98E-07 6.526404015 -0.158410481 SANGGS(ph)ESDGEENIGWSTVNLDEEK ddPTM_HeLa_A485_30min_R1 1 SANGGSESDGEENIGWSTVNLDEEK 25 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 S(0.057)ANGGS(0.471)ES(0.471)DGEENIGWSTVNLDEEK 59.678 0.017707 65054000 17484 14934 11600 23883 19239 15747 26891 32915 14663 34295 TRUE FALSE FALSE 21373.25548 16680.40139 15891.32272 25187.66782 17323.49761 16571.48857 21145.51817 24842.54464 17605.7296 25745.88765 0.830161918 0.647886048 0.617237321 0.978318097 0.672864647 0.643655748 0.821316338 0.964913115 0.683826864 1 14.65205439 -9.79146499 0.240745174 1.146137361 0.707019756 0.252513162 0.125003898 19.22982245 1.202994776 2.220010503 0.243999034 1.62E-10 9.79146499 -0.439117605 SANLVAATLGAILNR ddPTM_HeLa_A485_30min_R1 2 SANLVAATLGAILNR 15 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 0 ; ; 99.011 0.0035784 6301000 2813.71 3699.7 3319.5 2571.59 4728.2 3122.1 4761.8 5014.8 3921.7 5440.2 FALSE FALSE TRUE 3439.610082 4132.347732 4547.521186 2712.06945 4257.443806 3285.568328 3744.40253 3784.912437 4708.749218 4084.058259 0.842203971 1.011823894 1.113480978 0.664062381 1.04245423 0.804486156 0.91683377 0.926752802 1.152958386 1 11.99578773 -7.701085902 9.214293074 1.076001444 0.917054329 0.208989484 0.125438644 0.444145496 63.30965629 0.082478477 0.030883828 1.99E-08 7.701085902 -0.158947115 SANLVAATLGAILNR ddPTM_HeLa_A486_30min_R1 2 SANLVAATLGAILNR 15 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 0 ; ; 144.27 5.10E-06 10023500 8470.5 6937.6 6703.2 3476.1 9259.1 8723.7 10102 8058 9006.6 9433.4 FALSE FALSE TRUE 7876.761692 6387.83931 9298.858558 8092.536472 8097.73734 7647.45859 7574.372752 6223.369305 9787.29934 7071.215239 1.113919097 0.903358064 1.315029771 1.144433623 1.145169121 1.081491417 1.071155734 0.880098978 1.384104289 1 12.78774246 -6.377764512 5.90098716 1.074280644 1.123668257 0.016697683 0.150127593 1.247085112 56.08631907 0.052537394 0.046119106 4.19E-07 6.377764512 0.049387612 SANPPHTIQASEEQSST(ph)PAPVKK ddPTM_HeLa_A485_30min_R1 2 SANPPHTIQASEEQSSTPAPVKK 23 1 Q9Y450;E9PS53;E9PHZ9;B7Z524;H0YDX7;J3QT46;Q9Y450-4 Q9Y450 HBS1L HBS1-like protein 1 0 SANPPHTIQASEEQSS(0.061)T(0.939)PAPVKK;SANPPHTIQASEEQSS(0.049)T(0.951)PAPVKK ; 262.74 2.21E-61 686370000 906430 741070 488290 781390 1158520 955060 1333680 1556390 705890 1178780 TRUE FALSE FALSE 1108062.226 827731.69 668928.7904 824075.3571 1043173.681 1005065.465 1048728.373 1174682.912 847555.6482 884931.8398 1.25214415 0.935362084 0.755909959 0.931230316 1.178818112 1.135754664 1.185095084 1.327427559 0.957763762 1 19.75520681 -5.759898931 24.99789547 1.150142756 0.951086513 0.211258068 0.14919937 54.6683948 887130.1386 0.045528508 0.055665743 1.74E-06 5.759898931 -0.199056243 SANPPHTIQASEEQSST(ph)PAPVKK ddPTM_HeLa_A486_30min_R1 1 SANPPHTIQASEEQSSTPAPVKK 23 1 Q9Y450;E9PS53;E9PHZ9;B7Z524;H0YDX7;J3QT46;Q9Y450-4 Q9Y450 HBS1L HBS1-like protein 1 0 SANPPHTIQASEEQSS(0.249)T(0.75)PAPVKK 224.91 3.00E-38 363640000 537360 498600 272940 93201 521720 534940 653200 615490 364420 485210 TRUE FALSE FALSE 499693.8389 459089.1201 378629.6776 216976.6381 456281.0128 468944.5417 489762.4512 475356.3631 396008.219 363710.2578 1.373878873 1.262238582 1.041020069 0.596564528 1.254517856 1.289335485 1.346573105 1.306964411 1.088801348 1 18.47243009 SANPTRPS(ph)SPVTSHISK ddPTM_HeLa_A485_30min_R1 1 SANPTRPSSPVTSHISK 17 1 F8W6N3;Q92560;H0Y8E8 F8W6N3;H0Y8E8 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 SANPTRPS(0.649)S(0.35)PVT(0.001)SHISK 154.95 1.22E-08 630090000 118680 218890 193190 58028 244730 167660 205770 224220 182850 147160 TRUE FALSE FALSE 145079.9566 244487.2814 264659.0203 61197.92271 220363.8219 176438.4183 161805.5585 169229.6934 219546.3178 110475.7203 1.313229334 2.213040845 2.395630638 0.553949072 1.994681015 1.597078688 1.464625513 1.531827021 1.987281162 1 16.75336981 -11.06233596 2.53079117 0.031126572 1.673672431 0.141576253 0.496681575 7625502.344 3583574.821 42676828.37 0.122621451 8.66E-12 11.06233596 1.642545859 SANPTRPSS(ph)PVTSHISK ddPTM_HeLa_A485_30min_R1 3 SANPTRPSSPVTSHISK 17 1 F8W6N3;Q92560;H0Y8E8 F8W6N3;H0Y8E8 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 SANPTRPS(0.011)S(0.959)PVT(0.029)SHISK;S(0.002)ANPT(0.004)RPS(0.066)S(0.922)PVT(0.007)SHISK;SANPTRPS(0.061)S(0.939)PVT(0.001)SHISK ;; 197.28 2.93E-25 3494110000 1928870 3102490 2816200 957930 4054150 2502330 3251450 3572980 2668490 2341690 TRUE FALSE FALSE 2357940.477 3465299.217 3858029.572 1010259.29 3650504.591 2633348.129 2556751.146 2696701.053 3204031.466 1757949.779 1.341301387 1.971216277 2.194618765 0.574680405 2.076569328 1.497965506 1.454393736 1.534003466 1.822595563 1 20.74546243 -10.68516313 2.701146088 0.914229377 1.60898473 0.147353515 0.438375358 105043877.8 89191853.62 61687091.18 0.104308254 2.06E-11 10.68516313 0.694755352 SANPTRPSS(ph)PVTSHISK ddPTM_HeLa_A486_30min_R1 2 SANPTRPSSPVTSHISK 17 1 F8W6N3;Q92560;H0Y8E8 F8W6N3;H0Y8E8 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 SANPTRPS(0.029)S(0.969)PVT(0.002)SHISK;S(0.001)ANPT(0.003)RPS(0.127)S(0.802)PVT(0.066)SHISK ; 216.38 3.08E-34 2696500000 2612500 2387600 1925110 110180 2874900 1727560 2187000 1974880 2273400 903710 TRUE FALSE FALSE 2429377.241 2198397.881 2670564.148 256504.6082 2514303.235 1514431.212 1639789.468 1525242.935 2470460.142 677415.1338 3.586245892 3.245274235 3.942285926 0.378652019 3.711613616 2.235602862 2.420656679 2.251563125 3.646892458 1 19.36968069 SANTS(ph)PESSSR ddPTM_HeLa_A485_30min_R1 1 SANTSPESSSR 11 0 P20749;H7C0A2 P20749 BCL3 B-cell lymphoma 3 protein 1 0 SANT(0.006)S(0.993)PESSSR 124.81 6.38E-05 794960000 433580 603650 466080 475810 519030 481800 565930 606270 488640 600870 TRUE FALSE FALSE 530028.3752 674241.6164 638502.3872 501802.2955 467353.5508 507026.303 445014.4323 457581.3319 586705.5659 451084.1672 1.175009929 1.494713549 1.415483924 1.112436064 1.03606729 1.124017068 0.986544119 1.014403442 1.300656526 1 18.78303712 -5.311823638 5.552109529 1.076570765 1.375110318 0.560466946 0.113437052 0.137921156 10.02526493 0.031382412 0.047772722 4.88E-06 5.311823638 0.298539553 SANTS(ph)PESSSR ddPTM_HeLa_A486_30min_R1 1 SANTSPESSSR 11 0 P20749;H7C0A2 P20749 BCL3 B-cell lymphoma 3 protein 1 0 SANT(0.064)S(0.932)PES(0.003)S(0.001)SR 80.853 0.0066216 562660000 1023300 719760 835470 275440 813270 1004100 844960 783820 1014500 1036000 TRUE FALSE FALSE 951571.9543 662723.5963 1158986.359 641238.24 711262.0932 880224.3509 633542.0709 605361.2967 1102437.677 776578.8568 1.225338478 0.853388668 1.492425848 0.825721991 0.915891653 1.133464224 0.81581164 0.779523279 1.419608153 1 19.5667729 SAPAMQSSGS(ph)FNYARPK ddPTM_HeLa_A485_30min_R1 4 SAPAMQSSGSFNYARPK 17 1 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SAPAMQS(0.042)S(0.201)GS(0.757)FNYARPK;SAPAMQS(0.004)S(0.207)GS(0.789)FNYARPK;SAPAMQS(0.005)S(0.041)GS(0.953)FNYARPK;SAPAMQSS(0.006)GS(0.993)FNYARPK ;;; 130.37 6.30E-06 1005200000 260458 251790 189328 307649 405861 278931 427913 487545 306633 423848 TRUE FALSE FALSE 318395.9835 281234.6502 259368.3058 324455.0859 365452.0538 293535.3959 336485.8918 367973.8243 368171.4305 318190.4939 1.000645807 0.883856229 0.815135306 1.019688181 1.148532281 0.922514662 1.057498254 1.156457629 1.15707866 1 18.27953121 -5.463725642 6.267567747 1.074211286 0.899795661 0.479251319 0.080993581 0.201262669 16.52925684 0.023990649 0.035380873 3.44E-06 5.463725642 -0.174415625 SAPAMQSSGS(ph)FNYARPK ddPTM_HeLa_A486_30min_R1 1 SAPAMQSSGSFNYARPK 17 1 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SAPAMQSS(0.022)GS(0.977)FNYARPK 146.19 3.36E-08 333520000 124610 108390 79113 68831 113840 136730 155130 184440 117750 149610 TRUE FALSE FALSE 115875.4825 99800.78165 109747.6723 160242.0465 99561.12568 119861.6428 116314.8332 142447.0383 127956.6648 112146.6822 1.033249314 0.889912922 0.978608285 1.428861232 0.887775935 1.06879348 1.037166958 1.270185042 1.140975928 1 16.77502741 -5.031189031 24.97510064 1.122025639 0.954750766 0.189990872 0.143743595 964.8633676 772629.0274 0.038449212 0.06669089 9.31E-06 5.031189031 -0.167274873 SAPAPK(ac)K ddPTM_HeLa_A485_30min_R1 1 SAPAPKK 7 1 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 1 SAPAPK(1)K 114.6 0.0226 46507000 25387 21281 20879 44755 38051 54869 104040 114390 124020 273230 FALSE TRUE FALSE 31034.25057 23769.62783 28603.01095 47199.85232 34262.50883 57741.856 81811.00407 86335.67314 148909.6764 205118.7894 0.151298916 0.115882255 0.139446079 0.230109842 0.167037398 0.281504469 0.398846953 0.420905727 0.725967996 1 17.64610013 -7.739013378 0.623134391 1.015084917 0.137616054 0.973906489 0.044553068 0.099653011 0.090709622 0.042740611 0.019716517 1.82E-08 7.739013378 -0.877468863 down SAPAPK(ac)K ddPTM_HeLa_A486_30min_R1 2 SAPAPKK 7 1 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 1 ; SAPAPK(1)K;SAPAPK(1)K 114.78 0.022326 201106000 411340 367790 320290 180702 441690 627090 612260 460910 572250 644500 FALSE TRUE FALSE 382507.1902 338644.9809 444314.8657 420683.3882 386289.1216 549726.0116 459066.0722 355970.8546 621853.0908 483113.005 0.791755109 0.700964324 0.919691379 0.870776369 0.799583364 1.137882868 0.950225035 0.736827307 1.287179364 1 18.88200116 -5.148655453 0.412544631 1.032485826 0.655219569 0.302717582 0.145713717 3.682556288 0.83347307 0.128150665 0.641992002 7.10E-06 5.148655453 -0.377266257 SAPAPK(ac)K(ac)GSK ddPTM_HeLa_A485_30min_R1 2 SAPAPKKGSK 10 2 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; SAPAPK(1)K(1)GSK;SAPAPK(1)K(1)GSK 158.05 2.36E-05 140521000 29171 28403 26605 39234 56732 144636 368800 713010 524250 1031450 FALSE TRUE FALSE 35659.98831 31724.48378 36447.29663 41377.25407 51083.56288 152208.9173 290002.8672 538143.1795 629462.1663 774328.4974 0.046052791 0.040970317 0.047069553 0.053436305 0.065971436 0.196568921 0.374521754 0.694980465 0.8129136 1 19.56258621 -7.232393125 0.985574407 0.985506362 0.036471049 0.997371823 0.017946007 0.023460845 0.040677301 0.015194302 0.006261282 5.86E-08 7.232393125 -0.949035313 down SAPAPK(ac)K(ac)GSK ddPTM_HeLa_A486_30min_R1 2 SAPAPKKGSK 10 2 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 2 ; SAPAPK(1)K(1)GSK;SAPAPK(1)K(1)GSK 162.26 1.46E-05 331040000 412000 539700 387900 255510 717620 705360 773160 748660 615570 835830 FALSE TRUE FALSE 383120.9276 496932.2064 538105.2683 594840.1928 627609.4081 618339.8548 579707.1903 578206.4611 668928.1032 626532.7277 0.611493878 0.793146446 0.858862186 0.949415995 1.001718474 0.986923472 0.925262424 0.922867131 1.067666658 1 19.25703035 -4.156867171 0.861783771 0.981300078 0.349326559 0.893664999 0.040543684 0.830529761 0.427850646 0.015023135 0.519384811 6.97E-05 4.156867171 -0.631973519 SAPAPK(ac)K(ac)GSK(ac)K ddPTM_HeLa_A485_30min_R1 2 SAPAPKKGSKK 11 3 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; SAPAPK(1)K(1)GSK(1)K;SAPAPK(1)K(1)GSK(1)K 198.4 2.11E-19 429930000 47038 54611 49027 72169 113884 259370 745560 1563250 1134390 2164800 FALSE TRUE FALSE 57501.44082 60997.2814 67164.12748 76111.40973 102545.3091 272950.2121 586265.0153 1179860.486 1362051.668 1625155.2 0.035382123 0.037533204 0.041327824 0.046833318 0.063098779 0.16795332 0.360744017 0.725998653 0.838105596 1 20.63214607 -7.216050029 1.113669981 0.983436188 0.034750373 0.997294852 0.018739494 0.021749496 0.047906693 0.015151447 0.006092049 6.08E-08 7.216050029 -0.948685815 down SAPAPK(ac)K(ac)GSK(ac)K ddPTM_HeLa_A486_30min_R1 2 SAPAPKKGSKK 11 3 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 3 ; SAPAPK(1)K(1)GSK(1)K;SAPAPK(1)K(1)GSK(1)K 185.3 2.96E-13 1379730000 1095860 1257060 949090 585550 1817250 1636050 1890050 1810890 1443460 1887370 FALSE TRUE FALSE 1019045.873 1157445.987 1316603.066 1363189.992 1589313.56 1434210.785 1417139.499 1398589.878 1568580.275 1414760.267 0.720295796 0.818121638 0.930619198 0.9635484 1.123380121 1.013748278 1.001681721 0.988570227 1.10872514 1 20.43212618 -4.727402805 1.240930851 1.034570929 0.690249975 0.840418734 0.046216188 0.267887675 0.613438626 0.014851513 0.096935094 1.87E-05 4.727402805 -0.344320954 SAPAPK(ac)KGSK(ac)K ddPTM_HeLa_A485_30min_R1 1 SAPAPKKGSKK 11 3 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 2 SAPAPK(0.799)K(0.201)GSK(1)K 97.86 0.0037768 0 14434 13794 21615 23176 35085 22161 44084 78594 40400 53928 FALSE TRUE FALSE 17644.7935 15407.08831 29611.28798 24442.0462 31591.81421 23321.31569 34665.09327 59318.69827 48507.90943 40484.74207 0.435838111 0.380565307 0.731418467 0.603734764 0.780338779 0.576051977 0.856250812 1.465211219 1.198177559 1 15.30509067 -7.026502544 3.853464202 1.245826432 0.595227736 0.770588997 0.154940372 0.104014465 3.348950255 0.07701864 0.045130502 9.41E-08 7.026502544 -0.650598696 SAPAPK(ac)KGSK(ac)K ddPTM_HeLa_A486_30min_R1 1 SAPAPKKGSKK 11 3 P58876;P62807;O60814;P57053;Q5QNW6;Q5QNW6-2;U3KQK0;Q99877;Q99880;P23527;Q8N257;Q16778;P06899 P58876;P62807;Q5QNW6;U3KQK0;Q99880;P23527;Q16778 HIST1H2BD;HIST1H2BC;HIST1H2BK;H2BFS;HIST2H2BF;HIST1H2BN;HIST1H2BL;HIST1H2BO;HIST3H2BB;HIST2H2BE;HIST1H2BJ Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 2-F;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 2-E;Histone H2B type 1-J 0 2 SAPAPK(0.992)K(0.008)GSK(1)K 117.92 0.0015762 0 57514 33374 20091 23672 54502 35704 53057 50975 30969 62395 FALSE TRUE FALSE 53482.5656 30729.32269 27870.77326 55109.61232 47665.85095 31299.20349 39781.57742 39369.10528 33653.41786 46770.88588 1.143501232 0.657018188 0.59590005 1.178288828 1.019135089 0.669202708 0.850562838 0.841743844 0.719537747 1 15.51332313 -6.253404356 24.84165515 0.808465505 0.90070761 0.061911169 0.192141799 2112.754241 6531950.157 0.066679228 0.065523928 5.58E-07 6.253404356 0.092242106 SAPAS(ph)PTHPGLMSPR ddPTM_HeLa_A485_30min_R1 7 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 S(0.21)APAS(0.785)PT(0.005)HPGLMSPR;S(0.002)APAS(0.983)PT(0.015)HPGLMSPR;S(0.005)APAS(0.98)PT(0.015)HPGLMSPR;S(0.006)APAS(0.958)PT(0.037)HPGLMSPR;SAPAS(0.868)PT(0.132)HPGLMSPR;SAPAS(0.994)PT(0.006)HPGLMSPR;SAPAS(0.769)PT(0.231)HPGLMSPR ;;;;;; 185.71 4.98E-18 10886660000 3496430 4978210 4218710 3117980 5231170 3705390 4114330 4581630 3621520 4302680 TRUE FALSE FALSE 4274198.791 5560368.355 5779386.384 3288307.352 4710336.347 3899398.491 3235269.785 3457978.059 4348325.845 3230101.061 1.323239958 1.721422411 1.789227729 1.01801996 1.45826284 1.207206343 1.001600174 1.070547947 1.346188792 1 21.62314787 -5.262701231 24.99995302 1.168462308 1.622309277 0.564639426 0.182384901 82.43810722 1633285.091 0.051073264 0.080751968 5.46E-06 5.262701231 0.453846969 SAPAS(ph)PTHPGLMSPR ddPTM_HeLa_A486_30min_R1 8 SAPASPTHPGLMSPR 15 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 S(0.006)APAS(0.985)PT(0.009)HPGLMSPR;S(0.001)APAS(0.969)PT(0.029)HPGLMSPR;S(0.186)APAS(0.806)PT(0.008)HPGLMSPR;S(0.172)APAS(0.791)PT(0.037)HPGLMSPR;SAPAS(0.95)PT(0.05)HPGLMSPR;S(0.04)APAS(0.926)PT(0.033)HPGLMSPR;S(0.03)APAS(0.968)PT(0.002)HPGLMSPR;SAPAS(0.982)PT(0.018)HPGLMSPR ;;;;;;; 181.94 6.65E-18 9810770000 2849260 2841620 2148873 547189 2942860 2290750 2547689 2510620 2121600 2350891 TRUE FALSE FALSE 2649541.588 2616439.682 2980974.174 1273883.645 2573739.058 2008140.556 1910230.265 1939006.632 2305501.996 1762212.592 1.503531186 1.4847469 1.691608713 0.722888743 1.460515644 1.139556354 1.083995356 1.100325035 1.308299581 1 20.74895655 -5.234359047 24.99995457 1.134630541 1.552440761 0.536859923 0.188182434 584.4301791 539532.1675 0.048505236 0.083987219 5.83E-06 5.234359047 0.41781022 SAPGGGGK(ac)R ddPTM_HeLa_A485_30min_R1 2 SAPGGGGKR 9 1 Q14847;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 1 ; SAPGGGGK(1)R;SAPGGGGK(1)R 133.86 0.0022018 89746000 46177 66105 41097 53991 40044 55788 63447 89978 59590 70247 FALSE TRUE FALSE 56448.91434 73835.40471 56300.49049 56940.39162 36057.07876 58708.97342 49891.03014 67910.75442 71549.16641 52735.7157 1.070411458 1.400102449 1.067596974 1.079731087 0.683731666 1.113267785 0.946057704 1.287756381 1.356749699 1 15.68649275 -9.979727791 14.07302917 1.000007512 1.105719402 0.027221873 0.1974368 0 0 0.201768082 0.048935948 1.05E-10 9.979727791 0.10571189 SAPGGGGK(ac)R ddPTM_HeLa_A486_30min_R1 2 SAPGGGGKR 9 1 Q14847;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 1 ; SAPGGGGK(1)R;SAPGGGGK(1)R 133.86 0.0022018 38274000 26561 13359 25388 8976.9 18085.5 32752 21698.8 18158.2 27348 27334 FALSE TRUE FALSE 24699.21106 12300.38419 35218.91351 20898.67687 15817.04795 28711.39124 16269.53073 14023.97425 29718.54666 20489.38849 1.205463554 0.600329492 1.718885536 1.019975627 0.77196291 1.401281022 0.794046672 0.6844506 1.450435999 1 14.32258931 -5.489949489 24.98893644 0.999011044 1.159435432 0.039991145 0.344357167 2413.158945 1831267.067 0.095237216 0.141140213 3.24E-06 5.489949489 0.160424388 SAPGGGSKVPQK(ac)K ddPTM_HeLa_A485_30min_R1 2 SAPGGGSKVPQKK 13 2 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 1 ; SAPGGGSKVPQK(1)K;SAPGGGSKVPQK(1)K 130.47 0.00098891 1611630000 804680 1715250 765330 499270 1621910 2340300 3380100 7192400 870810 1051800 FALSE TRUE FALSE 983678.2899 1915833.567 1048457.415 526543.8559 1460426.946 2462834.489 2657914.022 5428452.623 1045573.579 789605.6169 1.245784312 2.426317044 1.32782416 0.666844111 1.849565041 3.11906911 3.366128565 6.874891093 1.324171912 1 19.59077273 -6.298708396 2.788885429 3.59348516 1.461393409 0.196576602 1.56070829 0.363938363 5.635096739 0.573189878 0.518597421 5.03E-07 6.298708396 -2.132091751 SAPGGGSKVPQK(ac)K ddPTM_HeLa_A486_30min_R1 1 SAPGGGSKVPQKK 13 2 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 1 SAPGGGSKVPQK(1)K 135.58 0.00058908 441840000 1484900 795100 512610 518050 1238500 720120 1214500 1309400 507870 1644600 FALSE TRUE FALSE 1380816.178 732093.3803 711106.3202 1206046.581 1083155.781 631278.916 910619.2543 1011278.204 551892.5805 1232781.455 1.120081886 0.593854959 0.576830806 0.978313371 0.878627576 0.512076908 0.738670468 0.820322369 0.447680794 1 20.23348563 SAPGTS(ph)PR ddPTM_HeLa_A485_30min_R1 6 SAPGTSPR 8 0 Q03111 Q03111 MLLT1 Protein ENL 1 0 SAPGT(0.003)S(0.997)PR;SAPGT(0.003)S(0.997)PR;SAPGT(0.003)S(0.997)PR;SAPGT(0.001)S(0.999)PR;SAPGT(0.002)S(0.998)PR;SAPGT(0.006)S(0.994)PR ;;;;; 131.62 0.00053338 17199100000 13023920 18290030 11570360 15524470 12050620 15321390 16866040 22349560 14863180 18870150 TRUE FALSE FALSE 15921046.07 20428889.91 15850717.65 16372532.49 10850817.96 16123594.29 13262472.77 16868295.37 17846083.89 14166168.88 1.123878037 1.442089959 1.118913503 1.155748786 0.765967006 1.13817606 0.936207445 1.190745042 1.259767834 1 23.75594631 -4.94477411 8.200948476 1.063145428 1.283954266 0.246687924 0.151069699 0.347158885 45.66822614 0.039539932 0.082680469 1.14E-05 4.94477411 0.220808837 SAPGTS(ph)PR ddPTM_HeLa_A486_30min_R1 5 SAPGTSPR 8 0 Q03111 Q03111 MLLT1 Protein ENL 1 0 SAPGTS(1)PR;S(0.001)APGT(0.146)S(0.853)PR;SAPGT(0.024)S(0.976)PR;SAPGT(0.162)S(0.838)PR;SAPGT(0.12)S(0.88)PR ;;;; 150.81 0.00022384 11734450000 13286480 7310320 10892020 3868817 8316410 14589430 10200960 8700920 13697960 14378650 TRUE FALSE FALSE 12355166.36 6731023.619 15109701.84 9006801.495 7273288.31 12789534.46 7648571.913 6719910.456 14885310.2 10778142.45 1.146316856 0.624506834 1.401883665 0.835654338 0.674818351 1.186617687 0.709637301 0.623475751 1.381064527 1 23.36160522 -3.936178092 20.16125878 0.926937773 5.393502687 0.045217118 0.284120837 1109.635184 362216.5076 0.065350313 7291.902555 0.00011583 3.936178092 4.466564915 SAPS(ph)SPAPR ddPTM_HeLa_A485_30min_R1 1 SAPSSPAPR 9 0 E9PAK5;O75064 E9PAK5 DENND4B DENN domain-containing protein 4B 1 0 SAPS(0.5)S(0.5)PAPR 104.42 0.0012088 95233000 216250 291140 263080 237100 329200 284430 303140 318010 257600 327270 TRUE FALSE FALSE 264354.0664 325186.2904 360404.2397 250052.1726 296423.6921 299322.315 238371.6626 240017.5489 309297.9572 245687.612 1.075976376 1.323576259 1.466920684 1.017764675 1.206506465 1.218304466 0.970222555 0.976921657 1.258907418 1 17.90646559 -6.053586269 1.02016201 1.060768446 1.264875951 0.215126743 0.142303107 0.787338761 1.755535822 0.074606698 0.083459599 8.84E-07 6.053586269 0.204107505 SAPS(ph)SPAPR ddPTM_HeLa_A486_30min_R1 1 SAPSSPAPR 9 0 E9PAK5;O75064 E9PAK5 DENND4B DENN domain-containing protein 4B 1 0 SAPS(0.5)S(0.5)PAPR 134.25 0.00020032 96981000 246670 250320 201110 79430 286320 245440 251540 249310 215010 243030 TRUE FALSE FALSE 229379.7068 230483.7316 278985.1779 184917.0542 250407.0758 215160.1083 188602.0315 192547.5554 233647.2399 182173.7061 1.259126312 1.265186598 1.531423957 1.015058968 1.374551142 1.181071148 1.03528679 1.056944822 1.282551938 1 17.47495522 -6.506567978 6.443137285 1.099196491 1.285659463 0.306881156 0.138568509 0.209600011 37.34770802 0.049649973 0.041404179 3.11E-07 6.506567978 0.186462972 SAPTAPTPPPPPPPAT(ph)PR ddPTM_HeLa_A485_30min_R1 1 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 SAPTAPTPPPPPPPAT(1)PR 152.01 1.29E-07 152210000 56602 70869 77549 61853 89207 69748 90264 98726 67625 81891 TRUE FALSE FALSE 69192.91963 79156.51307 106237.6022 65231.87277 80325.23786 73399.89743 70978.35901 74513.2937 81196.71721 61477.08079 1.125507567 1.287577615 1.728084691 1.061076289 1.306588355 1.193939213 1.154549925 1.212049966 1.320764034 1 15.90776104 SAPTAPTPPPPPPPAT(ph)PR ddPTM_HeLa_A486_30min_R1 1 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 SAPTAPTPPPPPPPAT(1)PR 123.54 3.89E-06 0 37434 38661 31820 15684 43828 38321 39974 38660 30961 44900 TRUE FALSE FALSE 34810.06991 35597.36156 44141.55617 36513.14463 38330.68356 33593.34464 29972.0824 29857.96194 33644.72441 33656.74775 1.03426719 1.057658982 1.311521734 1.084868476 1.138870691 0.998116184 0.89052224 0.887131525 0.999642766 1 15.03860816 -6.394440482 3.365548994 0.935282177 1.130233188 0.541529249 0.079123385 0.193744184 4.074994508 0.030708382 0.02644274 4.03E-07 6.394440482 0.194951011 SAPTS(ph)PTATNISSK ddPTM_HeLa_A485_30min_R1 3 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 SAPT(0.003)S(0.997)PTATNISSK;SAPT(0.002)S(0.958)PT(0.04)ATNISSK;SAPT(0.299)S(0.698)PT(0.001)AT(0.002)NISSK ;; 263.15 7.56E-42 413873000 673340 754580 564850 733470 879680 748910 969740 1017190 646460 1110010 TRUE FALSE FALSE 823122.16 842821.567 773811.5204 773537.6089 792095.9705 788121.7696 762547.127 767722.5576 776198.5923 833304.9352 0.987780253 1.011420347 0.928605469 0.928276764 0.950547557 0.945778353 0.915087736 0.921298465 0.931470053 1 19.668485 -4.763563149 25 0.936577927 0.999600312 0.505531722 0.023314025 36.17252123 425829.5788 0.005736362 0.012971095 1.72E-05 4.763563149 0.063022385 SAPTS(ph)PTATNISSK ddPTM_HeLa_A486_30min_R1 3 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 SAPT(0.001)S(0.995)PT(0.004)ATNISSK;SAPT(0.024)S(0.971)PT(0.002)AT(0.003)NISSK;SAPT(0.033)S(0.965)PT(0.001)ATNISSK ;; 228.76 4.09E-28 562100000 814120 816350 447263 287055 839780 826760 859580 923840 650400 929760 TRUE FALSE FALSE 757054.3921 751659.4529 620455.2117 668278.547 734446.9618 724762.7571 644503.9923 713501.7993 706777.1957 696942.0443 1.086251573 1.078510701 0.890253669 0.958872481 1.053813538 1.039918259 0.92475981 1.023760591 1.014111864 1 19.41067917 -4.570286942 24.9999236 0.98954523 1.084317017 0.376267588 0.048530295 109.2133455 57591.38904 0.012881368 0.034080942 2.69E-05 4.570286942 0.094771787 SAQGSS(ph)SPVPSMVQK ddPTM_HeLa_A486_30min_R1 1 SAQGSSSPVPSMVQK 15 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGS(0.001)S(0.5)S(0.5)PVPSMVQK 183.41 8.22E-18 415540000 827970 846610 495920 273240 754950 811730 944730 916220 688250 1001500 TRUE FALSE FALSE 769933.5786 779521.5403 687953.5052 636116.5288 660257.1314 711587.0057 708348.5617 707616.7069 747908.0642 750717.8813 1.025596429 1.038368154 0.916394191 0.847344315 0.879501005 0.947875391 0.943561595 0.942586722 0.99625716 1 19.51791132 -9.787087934 19.15415138 1 0.944943714 0.064897959 0.057013667 0 0 0.061723891 0.014970242 1.63E-10 9.787087934 -0.055056286 SAQGSS(ph)SPVPSMVQKS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SAQGSSSPVPSMVQKSPR 18 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 SAQGS(0.096)S(0.707)S(0.198)PVPS(0.006)MVQKS(0.994)PR 111.65 0.00010744 565160000 383990 448990 333000 428010 716420 612880 914900 1057800 449110 739710 TRUE FALSE FALSE 469407.2508 501495.4748 456190.5573 451391.1025 645090.7093 644969.4491 719424.141 798372.8914 539242.2575 555313.9104 0.845300725 0.903084662 0.821500324 0.812857546 1.161668558 1.161450194 1.295526958 1.437696547 0.971058436 1 19.08294401 -5.803877655 5.573805017 1.20194139 0.847546749 0.600418525 0.12882662 0.120822188 8.931174567 0.03975865 0.046271702 1.57E-06 5.803877655 -0.354394641 SAQGSSS(ph)PVPSMVQK ddPTM_HeLa_A485_30min_R1 6 SAQGSSSPVPSMVQK 15 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGSS(0.003)S(0.997)PVPSMVQK;SAQGSSS(1)PVPSMVQK;SAQGSS(0.02)S(0.98)PVPSMVQK;SAQGSS(0.019)S(0.981)PVPSMVQK;SAQGSS(0.015)S(0.985)PVPSMVQK;S(0.004)AQGS(0.018)S(0.122)S(0.855)PVPS(0.001)MVQK ;;;;; 385.73 3.21E-134 3562258000 3925590 3977070 3158140 4442940 4897540 3978560 5500050 5366180 3507640 5752460 TRUE FALSE FALSE 4798823.952 4442153.741 4326467.407 4685646.562 4409923.721 4186871.25 4324919.386 4050115.941 4211591.174 4318477.588 1.111230487 1.028638832 1.001850147 1.085022781 1.021175549 0.96952483 1.001491683 0.937857349 0.975249052 1 22.04209137 -6.094343491 3.713068523 0.974646205 1.051165177 0.570500157 0.032461884 0.18678669 4.742748388 0.011079976 0.011307069 8.05E-07 6.094343491 0.076518973 SAQGSSS(ph)PVPSMVQK ddPTM_HeLa_A486_30min_R1 6 SAQGSSSPVPSMVQK 15 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGSS(0.023)S(0.977)PVPSMVQK;SAQGS(0.001)S(0.023)S(0.977)PVPSMVQK;SAQGSS(0.001)S(0.999)PVPSMVQK;SAQGSS(0.078)S(0.922)PVPSMVQK;SAQGSS(0.014)S(0.986)PVPSMVQK;SAQGSS(0.002)S(0.998)PVPSMVQK ;;;;; 367.31 2.32E-118 2914308000 5628350 5569440 3021600 1706510 4943640 5302350 5900660 5803390 4084730 6265900 TRUE FALSE FALSE 5233831.73 5128097.291 4191644.441 3972841.522 4323562.574 4648199.967 4424252.457 4482084.784 4438797.685 4696877.856 1.114321447 1.091809804 0.892432073 0.845847315 0.920518418 0.989636118 0.941956038 0.954268968 0.945052825 1 22.16327065 -4.748576323 21.19807001 0.93290582 1.103066764 0.71145424 0.042461677 20.02394897 32994.54903 0.011706935 0.030326014 1.78E-05 4.748576323 0.170160944 SAQGSSS(ph)PVPSMVQKS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SAQGSSSPVPSMVQKSPR 18 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 SAQGS(0.057)S(0.426)S(0.516)PVPS(0.003)MVQKS(0.997)PR;SAQGS(0.041)S(0.43)S(0.529)PVPSMVQKS(1)PR;S(0.012)AQGS(0.103)S(0.417)S(0.469)PVPS(0.338)MVQKS(0.661)PR ;; 154.14 2.15E-08 960810000 1432050 1374630 1009380 804772 2166400 1720810 2397570 2528260 1196190 1940430 TRUE FALSE FALSE 1331670.69 1265699.312 1400238.968 1873549.887 1894669.911 1508513.958 1797672.627 1952630.39 1299876.712 1454533.698 0.915530999 0.870175311 0.962672072 1.288075958 1.302596092 1.037111729 1.235909921 1.342444243 0.893672463 1 20.47212529 -5.103932402 5.195732797 1.174950862 0.897813928 0.390601156 0.138240954 0.20273573 8.156577534 0.036822345 0.065912282 7.87E-06 5.103932402 -0.277136933 SAQGSSSPVPSMVQKS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SAQGSSSPVPSMVQKSPR 18 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGSSSPVPS(0.083)MVQKS(0.917)PR;SAQGSSSPVPSMVQKS(1)PR;SAQGSSSPVPSMVQKS(1)PR ;; 192.51 1.37E-18 1721310000 587140 869990 676970 807810 1476530 1211310 1769550 2288400 822160 1249570 TRUE FALSE FALSE 717747.2674 971727.7626 927409.3741 851938.6148 1329521.489 1274732.319 1391471.187 1727166.312 987159.9707 938075.1956 0.765127647 1.035874061 0.9886301 0.908177318 1.41728669 1.358880743 1.48332585 1.841181091 1.05232499 1 19.83934405 -5.762822146 24.93243462 1.407119345 0.936995052 0.452102749 0.230452752 29.65300369 534672.1824 0.067883587 0.081238455 1.73E-06 5.762822146 -0.470124293 SAQGSSSPVPSMVQKS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SAQGSSSPVPSMVQKSPR 18 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGSSSPVPS(0.053)MVQKS(0.947)PR;SAQGSSSPVPSMVQKS(1)PR;SAQGSSSPVPSMVQKS(1)PR ;; 212.94 2.86E-26 945650000 1001390 1009790 784460 551193 1688110 1287520 1825370 1886970 942380 1423830 TRUE FALSE FALSE 931197.7322 929770.5628 1088223.921 1283205.16 1476371.503 1128678.873 1368643.119 1457348.123 1024066.257 1067293.7 0.872484989 0.871147803 1.019610553 1.202298073 1.383285128 1.05751479 1.282349103 1.365461187 0.959498081 1 20.0255258 -5.030897029 2.702892613 1.201466434 0.871414301 0.444189428 0.136771649 0.224582221 3.262024039 0.037389759 0.083290222 9.31E-06 5.030897029 -0.330052133 SAQIWSLAS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 SAQIWSLASPLR 12 0 P59923;A0A087X0J9 P59923 ZNF445 Zinc finger protein 445 1 0 SAQIWS(0.001)LAS(0.999)PLR 77.527 0.00772 37204000 4525.8 3505 3008.1 2208.2 2875.5 3667.8 3653.5 6267 3545.6 4268.1 TRUE FALSE FALSE 5532.548596 3914.879261 4120.921367 2328.828375 2589.205124 3859.840337 2872.899879 4730.008424 4257.169398 3204.141219 1.726686878 1.221818576 1.286123515 0.726818269 0.808080839 1.204641142 0.896620867 1.476217214 1.328645995 1 11.64572202 -4.146195784 1.62731608 1.079226349 2.093499784 0.420170342 0.225524946 1.467955998 3.004861248 0.067442722 2.555747746 7.14E-05 4.146195784 1.014273434 SAS(ph)ADNLTLPR ddPTM_HeLa_A485_30min_R1 5 SASADNLTLPR 11 0 Q8ND76-2;Q8ND76;Q8ND76-3 Q8ND76-2 CCNY Cyclin-Y 1 0 S(0.003)AS(0.997)ADNLTLPR;S(0.001)AS(0.999)ADNLTLPR;SAS(1)ADNLTLPR;SAS(1)ADNLTLPR;S(0.004)AS(0.996)ADNLTLPR ;;;; 152.55 5.12E-07 2408040000 2215360 2381090 1614260 2415380 1974250 2219680 2868960 2589710 2090770 4586240 TRUE FALSE FALSE 2708159.189 2659537.763 2211441.949 2547326.093 1777686.738 2335899.013 2255983.259 1954579.562 2510368.361 3442974.771 0.78657538 0.772453456 0.642305592 0.739861969 0.516322906 0.678453712 0.65524246 0.567700809 0.729127725 1 21.71522418 -10.43765215 5.66551547 1.00021396 0.671660969 0.582310053 0.082117798 0.000226804 2.25E-05 0.081257367 0.019695127 3.65E-11 10.43765215 -0.328552991 SAS(ph)ADNLTLPR ddPTM_HeLa_A486_30min_R1 4 SASADNLTLPR 11 0 Q8ND76-2;Q8ND76;Q8ND76-3 Q8ND76-2 CCNY Cyclin-Y 1 0 S(0.001)AS(0.999)ADNLTLPR;S(0.002)AS(0.997)ADNLTLPR;S(0.002)AS(0.998)ADNLTLPR;S(0.001)AS(0.999)ADNLTLPR ;;; 137.84 1.47E-05 2168810000 2375700 2630240 2331540 692612 3475610 2986690 2599400 2420150 3187510 3702240 TRUE FALSE FALSE 2209175.698 2421810.203 3234374.729 1612435.739 3039666.585 2618222.554 1949002.626 1869134.677 3463805.933 2775175.006 0.796049148 0.872669362 1.165466942 0.581021282 1.09530627 0.943444124 0.702298998 0.67351957 1.24813964 1 21.40414732 -7.77009838 24.99207704 1.1240698 0.86165113 0.261788101 0.181201658 289.8690258 836603.8098 0.16243867 0.044565475 1.70E-08 7.77009838 -0.26241867 SAS(ph)AGPAGESKPK ddPTM_HeLa_A485_30min_R1 1 SASAGPAGESKPK 13 1 F5H5Z1;H0YGL7;F5H510;Q8N5U6;Q8N5U6-2 F5H5Z1 RNF10 RING finger protein 10 1 0 S(0.001)AS(0.999)AGPAGESKPK 89.866 0.00079333 78340000 80924 63467 44744 103780 80873 80445 134510 127130 74253 161700 TRUE FALSE FALSE 98925.26462 70888.91356 61296.66755 109449.2386 72821.00016 84656.97581 105770.8397 95951.16817 89154.89601 121391.1659 0.814929685 0.583970943 0.504951634 0.901624413 0.599887147 0.697389923 0.871322381 0.790429579 0.734443033 1 16.88930391 -8.989378328 0.23027797 1.12228155 0.624986182 0.370437046 0.117478161 8.215308638 0.755558191 1.116560845 0.286422725 1.02E-09 8.989378328 -0.497295368 SAS(ph)AGPAGESKPK ddPTM_HeLa_A486_30min_R1 1 SASAGPAGESKPK 13 1 F5H5Z1;H0YGL7;F5H510;Q8N5U6;Q8N5U6-2 F5H5Z1 RNF10 RING finger protein 10 1 0 SAS(1)AGPAGESKPK 127.83 1.25E-05 77663000 140120 114560 60590 49389 105410 130680 178460 159680 95618 200590 TRUE FALSE FALSE 130298.3116 105481.8484 84052.07066 114980.088 92188.49489 114558.0303 133807.4204 123324.3498 103906.2452 150360.9584 0.866570106 0.701524182 0.559001961 0.764693769 0.613114574 0.761886806 0.889908005 0.820188639 0.691045377 1 17.19807049 -6.528098189 8.476027076 0.834199403 0.695693614 0.303995347 0.105253449 0.164753677 114.5789359 0.038870152 0.031068578 2.96E-07 6.528098189 -0.138505789 SAS(ph)APTLAETEKETAEHLDLAGASSRPK ddPTM_HeLa_A485_30min_R1 1 SASAPTLAETEKETAEHLDLAGASSRPK 28 2 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.112)AS(0.469)APT(0.418)LAETEKETAEHLDLAGASSRPK 207.83 4.29E-29 407850000 245880 193180 131800 349480 255520 299700 421540 401900 188660 452230 TRUE FALSE FALSE 300575.1577 215770.7206 180558.3047 368571.2075 230079.5316 315391.8286 331474.5353 303333.3948 226522.3315 339497.3837 0.885353385 0.635559303 0.531840047 1.085637843 0.677706347 0.928996345 0.976368453 0.893477857 0.667228504 1 18.37304093 -5.251510727 24.94877492 0.881866464 0.679381766 0.285830003 0.148535892 885.5385127 2225181.387 0.039576316 0.067507002 5.60E-06 5.251510727 -0.202484697 SAS(ph)APTLAETEKETAEHLDLAGASSRPK ddPTM_HeLa_A486_30min_R1 1 SASAPTLAETEKETAEHLDLAGASSRPK 28 2 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.008)AS(0.99)APT(0.002)LAETEKETAEHLDLAGASSRPK 140.34 2.21E-07 578880000 185910 179020 97729 75564 187980 235290 271000 266820 149350 234550 TRUE FALSE FALSE 172878.669 164833.8032 135572.2861 175916.8108 164401.7956 206262.3121 203192.9337 206070.9106 162295.7783 175817.1533 0.983286703 0.937529701 0.771098175 1.000566824 0.935072559 1.173163756 1.15570597 1.172075117 0.923094108 1 17.42371631 -6.186054445 6.856824711 1.099731922 0.920647901 0.414270485 0.093821436 0.239203071 18.50856877 0.031311714 0.031292559 6.52E-07 6.186054445 -0.179084021 SAS(ph)ASHQADIK ddPTM_HeLa_A486_30min_R1 4 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 S(0.001)AS(0.939)AS(0.059)HQADIK;SAS(0.5)AS(0.5)HQADIK;S(0.004)AS(0.498)AS(0.498)HQADIK;S(0.001)AS(0.5)AS(0.5)HQADIK ;;; 223.46 5.82E-18 796286000 1328510 1181530 734500 223287 1252080 1216810 1319570 1067380 1140960 1431930 TRUE FALSE FALSE 1235388.309 1087901.26 1018918.071 519823.4203 1095032.451 1066692.354 989399.629 824360.8747 1239859.331 1073365.408 1.150948503 1.013542315 0.949274183 0.484293062 1.020186083 0.993783055 0.921773351 0.768015131 1.155113927 1 20.03370987 -8.952897329 23.45587469 1 0.92710753 0.005366291 0.185630485 0 0 0.181597158 0.04404378 1.11E-09 8.952897329 -0.07289247 SAS(ph)ASPLTPCSVTR ddPTM_HeLa_A485_30min_R1 2 SASASPLTPCSVTR 14 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SAS(0.999)AS(0.001)PLTPCSVTR;SAS(0.997)AS(0.003)PLTPCSVTR ; 164.88 2.66E-08 170970000 202405 238460 262470 447970 395850 302320 502160 439010 279240 591550 TRUE FALSE FALSE 247429.294 266345.8227 359568.5753 472441.4668 356437.7841 318149.0077 394869.4137 331342.1092 335280.9067 444087.4717 0.557163419 0.599759821 0.80967962 1.063847771 0.802629677 0.71641068 0.889170353 0.74611902 0.754988438 1 18.76048435 -4.761843826 4.435185433 0.843379351 0.569981698 0.515074334 0.105215111 0.15462025 7.323301206 0.028371581 0.072190578 1.73E-05 4.761843826 -0.273397653 SAS(ph)ASPLTPCSVTR ddPTM_HeLa_A486_30min_R1 1 SASASPLTPCSVTR 14 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SAS(0.85)AS(0.15)PLTPCSVTR 191.84 7.99E-18 254000000 241760 209270 150000 156140 218010 276680 378690 331120 194420 441570 TRUE FALSE FALSE 224813.8724 192686.6831 208084.0171 363501.8109 190665.1529 242546.0347 283937.7566 255731.2043 211272.4821 330997.9979 0.679200098 0.582138515 0.628656422 1.098199425 0.576031137 0.732771909 0.857823185 0.772606499 0.638289305 1 18.33646296 -14 0.167083997 1.957822602 0.672426126 0.222141192 0.14925866 217.6166292 2.036929326 69.95732137 0.578155294 1.00E-14 14 -1.285396476 SAS(ph)EPSLHR ddPTM_HeLa_A485_30min_R1 7 SASEPSLHR 9 0 P04049;P04049-2;H7C155;Q96II5;P10398 P04049;Q96II5 RAF1;ARAF RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase A-Raf 1 0 S(0.061)AS(0.939)EPSLHR;S(0.004)AS(0.996)EPSLHR;SAS(0.997)EPS(0.003)LHR;S(0.01)AS(0.99)EPSLHR;S(0.075)AS(0.925)EPSLHR;SAS(0.964)EPS(0.035)LHR;S(0.124)AS(0.873)EPS(0.003)LHR ;;;;;; 143.22 8.77E-05 8467650000 2224157 3353340 3327980 1837322 4197690 2856870 3602350 3912740 2978870 2972560 TRUE FALSE FALSE 2718913.051 3745483.943 4559138.291 1937690.249 3779753.245 3006451.296 2832678.494 2953134.38 3576701.885 2231555.498 1.218393651 1.67841846 2.043031551 0.868313717 1.693775148 1.34724469 1.269373984 1.323352425 1.602784196 1 21.08961826 -12.66282904 0.156893218 4.00E-14 1.592025767 0.155013605 0.307582068 153.8302163 2.063961527 51.72399584 1.45809401 2.17E-13 12.66282904 1.592025767 SAS(ph)EPSLHR ddPTM_HeLa_A486_30min_R1 6 SASEPSLHR 9 0 P04049;P04049-2;H7C155;Q96II5;P10398 P04049;Q96II5 RAF1;ARAF RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase A-Raf 1 0 S(0.01)AS(0.99)EPSLHR;SAS(0.982)EPS(0.018)LHR;S(0.092)AS(0.908)EPSLHR;S(0.072)AS(0.928)EPSLHR;S(0.161)AS(0.839)EPSLHR;S(0.123)AS(0.877)EPSLHR ;;;;; 164.66 1.06E-05 11046850000 5896270 6516360 5927130 552899 8067980 5324570 6632320 6450180 6027040 4371140 TRUE FALSE FALSE 5482971.921 5999979.901 8222273.47 1287176.814 7056018.717 4667678.69 4972843.386 4981614.82 6549468.68 3276578.093 1.673383562 1.831172562 2.509408669 0.392841793 2.153471859 1.424558963 1.517694145 1.520371155 1.998874586 1 21.64375849 -11.08457979 2.139214907 7.34E-05 1.659260333 0.125153987 0.530124557 10124565.83 2802590.08 49323420.57 0.126289398 8.23E-12 11.08457979 1.659186942 SAS(ph)EPSLNR ddPTM_HeLa_A486_30min_R1 1 SASEPSLNR 9 0 H7C560;P15056;A0A2U3TZI2;A0A2R8Y8E0 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 SAS(0.676)EPS(0.324)LNR 157.24 2.99E-05 952330000 720170 737510 685070 240950 883490 687410 812160 784650 654070 700740 TRUE FALSE FALSE 669689.802 679067.0216 950347.4508 560943.7769 772674.446 602604.3433 608948.9778 606002.3238 710765.3142 525270.1429 1.27494359 1.292795775 1.809254654 1.067914833 1.471003933 1.147227482 1.159306285 1.153696497 1.353142424 1 19.00270006 -6.102451487 1.386714242 1.169359821 1.405820978 0.216428969 0.196577235 0.676903423 2.6527881 0.084148066 0.086712811 7.90E-07 6.102451487 0.236461157 SAS(ph)FAFEFPK ddPTM_HeLa_A486_30min_R1 1 SASFAFEFPK 10 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 S(0.025)AS(0.975)FAFEFPK 106.49 0.00091727 49700000 61267 62818 31317 32096 52067 73160 87830 82013 42559 88570 TRUE FALSE FALSE 56972.49968 57840.0729 43443.7811 74721.11004 45536.27135 64134.26304 65854.00503 63340.43023 46248.04839 66391.49551 0.858129483 0.871197018 0.654357622 1.125462071 0.685875066 0.966001181 0.991904227 0.954044336 0.696595973 1 16.01871083 -5.236458044 24.99673916 0.910728114 0.802224993 0.139486541 0.138477374 1746.835318 1747910.399 0.036213667 0.062693365 5.80E-06 5.236458044 -0.108503121 SAS(ph)FAFEFPKDR ddPTM_HeLa_A485_30min_R1 1 SASFAFEFPKDR 12 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 S(0.152)AS(0.848)FAFEFPKDR 71.344 0.0055665 44774000 43739 48858 47098 47139 85958 56214 105480 121920 57080 72651 TRUE FALSE FALSE 53468.58965 54571.51809 64521.51011 49714.08421 77399.7197 59157.27812 82943.33631 92018.92884 68535.43243 54540.44274 0.980347554 1.000569767 1.18300305 0.911508629 1.419125255 1.08464976 1.520767565 1.687168718 1.256598388 1 15.73503879 -5.977777595 1.308656373 1.392553958 1.022398671 0.280886114 0.210485672 0.486128256 1.730869914 0.088266082 0.101992014 1.05E-06 5.977777595 -0.370155288 SAS(ph)FSQGTR ddPTM_HeLa_A486_30min_R1 1 SASFSQGTR 9 0 Q9UQC2-2;Q9UQC2 Q9UQC2-2 GAB2 GRB2-associated-binding protein 2 1 0 SAS(0.998)FS(0.001)QGTR 128.33 0.00026428 234170000 190260 207920 196900 57449 225920 187860 198450 219080 174710 174070 TRUE FALSE FALSE 176923.7565 191443.662 273144.9532 133744.1753 197583.007 164683.7432 148795.711 169200.2665 189854.0035 130481.739 1.355927334 1.467206549 2.093357701 1.025003011 1.514257922 1.262121002 1.140356591 1.29673522 1.455023553 1 16.99348839 -5.288513219 24.99985877 1.262248461 1.621668407 0.36921033 0.236377976 819.9825419 757166.2363 0.065584693 0.097306591 5.15E-06 5.288513219 0.359419946 SAS(ph)LSNLHSLDR ddPTM_HeLa_A485_30min_R1 2 SASLSNLHSLDR 12 0 B0QY53;B0QY54;A0A087WUW0;Q9Y3M2 B0QY53 CBY1 Protein chibby homolog 1 1 0 S(0.116)AS(0.884)LS(0.001)NLHSLDR;S(0.043)AS(0.957)LS(0.001)NLHSLDR ; 181.97 5.45E-13 152330000 147545 191165 195573 153313 245704 192328 222162 238784 177181 219602 TRUE FALSE FALSE 180365.8762 213520.0838 267923.5912 161688.101 221240.847 202397.9967 174695.2738 180221.8496 212739.6015 164859.2629 1.094059703 1.295165829 1.625165529 0.98076443 1.341998279 1.227701696 1.059663077 1.093186069 1.290431595 1 17.33087542 -6.594376107 5.768295998 1.119713009 1.274102817 0.15649094 0.17165399 0.407308834 24.15234854 0.066131179 0.050988594 2.54E-07 6.594376107 0.154389808 SAS(ph)LSNLHSLDR ddPTM_HeLa_A486_30min_R1 1 SASLSNLHSLDR 12 0 B0QY53;B0QY54;A0A087WUW0;Q9Y3M2 B0QY53 CBY1 Protein chibby homolog 1 1 0 S(0.183)AS(0.813)LS(0.004)NLHSLDR 150.76 8.88E-08 282940000 2454.7 4861.9 6292.1 0 10019 7525.2 5745.4 8575.7 6622.9 6421.8 TRUE FALSE FALSE 2282.638206 4476.625337 8728.569628 0 8762.323597 6596.817335 4307.840151 6623.200316 7196.978305 4813.739481 0.474192302 0.929968345 1.81326174 0 1.820273746 1.370414282 0.894905129 1.375895048 1.495090944 1 12.23294235 -5.810301326 24.99999988 1.325546548 0.885371512 0.208151827 0.488406502 211.1168576 108015.7444 0.149446756 0.16945703 1.55E-06 5.810301326 -0.440175035 SAS(ph)LSSLLITPFPSPNSSLTR ddPTM_HeLa_A485_30min_R1 1 SASLSSLLITPFPSPNSSLTR 21 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40;Q8TF40-2 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 S(0.317)AS(0.682)LS(0.001)SLLITPFPSPNSSLTR 117.65 3.66E-05 30294000 19769 26003 26015 25998 31092 25679 44840 42280 26675 36622 TRUE FALSE FALSE 24166.54585 29043.82465 35639.03107 27418.20491 27996.37131 27023.51273 35259.56769 31910.76371 32028.42782 27492.80938 0.879013327 1.056415307 1.29630372 0.997286401 1.018316132 0.982930204 1.282501443 1.160694903 1.164974717 1 14.74676672 -6.744939639 24.99639453 1.165434058 1.048141683 0.176055468 0.117932835 427.3909322 647479.1246 0.046222599 0.035702246 1.80E-07 6.744939639 -0.117292375 SAS(ph)PCIADK ddPTM_HeLa_A486_30min_R1 1 SASPCIADK 9 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 SAS(1)PCIADK 163.84 7.82E-07 0 195430 231460 127530 100150 237480 245010 257510 268470 165860 282760 TRUE FALSE FALSE 181731.3662 213118.2666 176913.0314 233154.2613 207693.044 214783.1573 193078.2743 207345.2417 180236.8783 211955.0555 0.857405197 1.005488008 0.834672383 1.100017457 0.979891909 1.013342931 0.910939698 0.978250984 0.850354231 1 17.69339885 -4.246242611 23.81366268 0.963624629 0.857405048 0.151606216 0.075408055 2783.549496 4361743.756 0.01805883 0.388791966 5.67E-05 4.246242611 -0.106219581 SAS(ph)PCRLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SASPCRLSPR 10 1 H0Y459 H0Y459 NCOR1 2 0 S(0.031)AS(0.969)PCRLS(1)PR;S(0.002)AS(0.998)PCRLS(1)PR ; 132.21 0.00027947 1037530000 894820 1214620 1194840 1053110 1607050 1200890 1377280 1475030 1080370 1346070 TRUE FALSE FALSE 1093869.622 1356659.243 1636861.037 1110638.733 1447046.459 1263766.743 1083012.877 1113276.58 1297190.349 1010519.522 1.082482425 1.342536403 1.619821292 1.099076969 1.431982687 1.250610915 1.071738698 1.101687356 1.283686581 1 19.94666576 -6.582436828 5.187504109 1.124590541 1.323597815 0.260870663 0.158994842 0.286396795 15.66325549 0.061101587 0.047214349 2.62E-07 6.582436828 0.199007273 SAS(ph)PCRLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SASPCRLSPR 10 1 H0Y459 H0Y459 NCOR1 2 0 S(0.031)AS(0.969)PCRLS(1)PR;S(0.188)AS(0.812)PCRLS(1)PR ; 128.09 0.00021153 0 1409350 1598710 1330110 538280 1836590 1491750 1647390 1670240 1396010 1594800 TRUE FALSE FALSE 1310561.843 1472022.397 1845164.214 1253143.043 1606227.757 1307713.052 1235195.598 1289962.813 1517017.271 1195451.7 1.096290083 1.231352465 1.543487047 1.048259033 1.343615771 1.093907058 1.033245925 1.079058914 1.268990852 1 20.18912441 -6.283461592 23.38444646 1.096119519 1.256228423 0.233958112 0.142469974 543.3381627 576944.4852 0.049732654 0.043909376 5.21E-07 6.283461592 0.160108905 SAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_HeLa_A485_30min_R1 3 SASPDDDLGSSNWEAADLGNEER 23 0 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 S(0.119)AS(0.881)PDDDLGSSNWEAADLGNEER;S(0.025)AS(0.975)PDDDLGSSNWEAADLGNEER;S(0.128)AS(0.872)PDDDLGSSNWEAADLGNEER ;; 313.81 4.49E-105 1336210000 413787 587712 532190 445259 608960 496318 685330 732810 509904 577335 TRUE FALSE FALSE 505832.4906 656439.806 729069.2273 469582.3717 548329.8042 522304.443 538903.6469 553087.1985 612237.0557 433416.0096 1.167083078 1.514572124 1.682146509 1.083444915 1.265135094 1.205088025 1.243386573 1.276111602 1.412585235 1 18.72539292 -5.273566886 24.87570216 1.226957324 1.460597741 0.328037032 0.15790283 820.8603715 1683731.37 0.044071168 0.065912487 5.33E-06 5.273566886 0.233640418 SAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_HeLa_A486_30min_R1 3 SASPDDDLGSSNWEAADLGNEER 23 0 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 S(0.131)AS(0.869)PDDDLGSSNWEAADLGNEER;S(0.105)AS(0.895)PDDDLGSSNWEAADLGNEER;S(0.122)AS(0.878)PDDDLGSSNWEAADLGNEER ;; 326.51 1.65E-122 1936840000 418075 493565 438006 168914 568947 484407 509864 524851 438729 518985 TRUE FALSE FALSE 388770.1014 454453.1119 607613.6534 393240.3284 497584.362 424645.7894 382290.6344 405353.8847 476758.383 389027.778 0.99933764 1.16817651 1.561877295 1.010828405 1.279045843 1.091556474 0.982682102 1.041966429 1.225512444 1 18.56951365 -6.40373122 5.949107098 1.062293182 1.210490147 0.155170883 0.158681353 0.450753825 20.25098241 0.057019712 0.049979184 3.95E-07 6.40373122 0.148196965 SAS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_HeLa_A485_30min_R1 3 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 S(0.009)AS(0.99)PDDDLGS(0.002)SNWEAADLGNEERK;S(0.025)AS(0.972)PDDDLGS(0.002)S(0.001)NWEAADLGNEERK;S(0.002)AS(0.998)PDDDLGSSNWEAADLGNEERK ;; 206.94 5.70E-29 8573100000 1127330 1388030 1006530 1391990 1689690 1694910 2493640 2855930 1224190 2150270 TRUE FALSE FALSE 1378100.669 1550348.034 1378887.332 1468030.889 1521458.531 1783652.867 1960853.443 2155508.69 1469873.704 1614247.262 0.853711016 0.960415465 0.854198341 0.909421328 0.942518886 1.104944025 1.214716908 1.335302677 0.910562922 1 20.62243015 -6.243248864 2.969869174 1.145235444 0.898673056 0.461098645 0.111945058 0.2177345 3.88827664 0.040087494 0.03773684 5.71E-07 6.243248864 -0.246562388 SAS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_HeLa_A486_30min_R1 3 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 SAS(1)PDDDLGSSNWEAADLGNEERK;S(0.134)AS(0.852)PDDDLGS(0.01)S(0.004)NWEAADLGNEERK;S(0.02)AS(0.98)PDDDLGSSNWEAADLGNEERK ;; 249.24 1.11E-49 3919300000 1320180 1196560 687112 567211 1391990 1190370 1692030 1690140 825057 1833210 TRUE FALSE FALSE 1227642.199 1101740.228 953180.1679 1320495.873 1217393.634 1043514.252 1268666.198 1305332.017 896573.6051 1374162.284 0.893374978 0.801754087 0.693644542 0.96094609 0.885916932 0.759382108 0.923228801 0.949911108 0.652451036 1 20.39012096 -11.13320214 2.562930247 1.352725626 0.839312139 0.19007302 0.101537822 11285377.55 5951254.332 22928032.43 0.024951287 7.36E-12 11.13320214 -0.513413487 SAS(ph)PDDDLGSSNWEAADLGNEERKQKFLR ddPTM_HeLa_A486_30min_R1 1 SASPDDDLGSSNWEAADLGNEERKQKFLR 29 3 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 0 S(0.033)AS(0.967)PDDDLGSSNWEAADLGNEERKQKFLR 145.06 1.99E-08 118100000 383960 8239.5 31416 134050 9077.1 16881 8170.9 10216 4982.1 18597 TRUE FALSE FALSE 357046.3868 7586.572012 43581.11655 312075.1745 7938.565477 14798.39385 6126.454397 7890.039814 5413.952439 13940.19015 25.61273432 0.544222993 3.126292832 22.38672293 0.569473256 1.061563271 0.439481408 0.565992266 0.388370057 1 13.76696262 -1.556813719 0.418890389 0.882346444 200 0.401690373 7.173902402 56.84686574 1.162903779 5.084631119 8902.919071 0.027745099 1.556813719 199.1176536 SAS(ph)PDGGPR ddPTM_HeLa_A485_30min_R1 4 SASPDGGPR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.04)AS(0.96)PDGGPR;S(0.034)AS(0.966)PDGGPR;S(0.006)AS(0.994)PDGGPR;S(0.166)AS(0.834)PDGGPR ;;; 120.36 0.00044526 3214770000 3793270 5381860 3452920 4996670 3712570 4753960 5158050 6759470 4857770 6145390 TRUE FALSE FALSE 4637069.825 6011221.711 4730298.796 5269625.43 3342933.495 5002869.995 4055990.48 5101699.384 5832679.881 4613457.371 1.005118169 1.302975454 1.025326218 1.142229137 0.72460483 1.084407981 0.87916505 1.105829961 1.264275231 1 22.1374169 -5.173332669 2.43326871 1.01351029 1.147409378 0.070768828 0.156267303 0.695815146 8.027998124 0.04559714 0.091737621 6.71E-06 5.173332669 0.133899089 SAS(ph)PDGGPR ddPTM_HeLa_A486_30min_R1 2 SASPDGGPR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.003)AS(0.997)PDGGPR;S(0.084)AS(0.916)PDGGPR ; 111.73 0.00085854 1843410000 4657300 2580100 3485000 1289470 2976800 5124300 3637800 3135400 4719400 4987600 TRUE FALSE FALSE 4330847.32 2375643.479 4834485.332 3001951.326 2603421.986 4492115.966 2727583.963 2421537.865 5128481.392 3738672.496 1.158391735 0.635424334 1.29310212 0.802945786 0.696349303 1.201527005 0.72955948 0.647699917 1.371738604 1 21.83409467 -7.768908853 24.99983079 1.185869187 0.895130231 0.184752529 0.243876346 305.1378295 1021232.959 0.208323672 0.05802318 1.70E-08 7.768908853 -0.290738955 SAS(ph)PDYNR ddPTM_HeLa_A485_30min_R1 4 SASPDYNR 8 0 Q14669-3;Q14669;Q14669-2;G5E9G6;C9JLD7;C9JLJ5;C9JSX9;F8W9P3 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 SAS(1)PDYNR;S(0.001)AS(0.999)PDYNR;S(0.004)AS(0.996)PDYNR;SAS(1)PDYNR ;;; 159.34 5.49E-05 6189870000 3796620 5450010 4773930 4083100 6279280 4466440 5330870 6205880 4757010 6525490 TRUE FALSE FALSE 4641165.021 6087341.261 6540005.367 4306149.414 5654092.835 4700295.892 4191886.075 4683878.2 5711698.273 4898805.436 0.947407502 1.242617479 1.335020436 0.879020298 1.154177872 0.959477969 0.855695563 0.956126603 1.165936951 1 22.22399856 -5.268743886 24.99552658 0.993199327 1.181775374 0.280750693 0.131289154 695.921141 2381395.776 0.037195999 0.056417608 5.39E-06 5.268743886 0.188576047 SAS(ph)PDYNR ddPTM_HeLa_A486_30min_R1 3 SASPDYNR 8 0 Q14669-3;Q14669;Q14669-2;G5E9G6;C9JLD7;C9JLJ5;C9JSX9;F8W9P3 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 SAS(1)PDYNR;SAS(1)PDYNR;S(0.479)AS(0.521)PDYNR ;; 192.26 3.92E-06 5493440000 3839740 4250310 3584640 1322220 4713650 3951250 4627520 4364630 3692760 4102280 TRUE FALSE FALSE 3570594.054 3913499.956 4972708.608 3078194.981 4122420.064 3463784.948 3469665.551 3370899.028 4012851.41 3075042.387 1.161152793 1.27266537 1.61711872 1.00102522 1.340605932 1.126418603 1.128330967 1.096212216 1.30497434 1 21.55217487 -5.288127838 24.99762926 1.153511248 1.342547774 0.287126515 0.149194972 982.1893249 919960.8867 0.041097922 0.060976327 5.15E-06 5.288127838 0.189036526 SAS(ph)PHDVDLCLVS(ph)PCEFEHR ddPTM_HeLa_A486_30min_R1 1 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 S(0.107)AS(0.893)PHDVDLCLVS(1)PCEFEHR 146.25 1.87E-09 24568000 13806 18782 15577 4123.4 20985 14180 17595 16017 14307 12293 TRUE FALSE FALSE 12838.27069 17293.64592 21608.83157 9599.483585 18352.86562 12430.61577 13192.5449 12370.27875 15547.14228 9214.752786 1.393230073 1.876734658 2.345025642 1.041751614 1.991682908 1.348990696 1.431676487 1.342442824 1.687201235 1 13.16972975 -9.248964776 0.151940667 0.50004258 1.982883997 0.236259451 0.353418996 25.07760125 1.145699315 8.404559644 2.62347475 5.64E-10 9.248964776 1.482841417 SAS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_A485_30min_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.183)AS(0.817)PHDVDLCLVSPCEFEHR;S(0.098)AS(0.893)PHDVDLCLVS(0.009)PCEFEHR ; 187.18 3.04E-19 2511200000 208208 227382 290385 312195 395938 236056 317821 271349 330507 417570 TRUE FALSE FALSE 254523.1513 253972.3469 397810.4954 329249.4223 356517.0225 248415.5271 249915.947 204800.2323 396836.7233 313477.4838 0.811934395 0.810177318 1.269024144 1.050312827 1.137297066 0.792450941 0.797237313 0.653317201 1.265917789 1 18.2580023 -6.270175513 24.78546005 0.873582771 1.020319531 0.067073461 0.198710208 1388.990626 3940722.073 0.0708239 0.063452254 5.37E-07 6.270175513 0.14673676 SAS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_A486_30min_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.028)AS(0.972)PHDVDLCLVSPCEFEHR;S(0.015)AS(0.985)PHDVDLCLVSPCEFEHR ; 232.57 1.81E-36 3542200000 174666 276340 225550 39994 288350 250880 257220 256320 258270 196759 TRUE FALSE FALSE 162422.8154 254441.812 312889.0004 93108.05318 252182.4542 219928.9764 192860.8354 197961.5314 280657.0515 147489.2657 1.101251773 1.725154782 2.121435746 0.63128698 1.709835987 1.491152426 1.30762625 1.342209757 1.902898155 1 17.17025043 -10.03774723 4.361720144 0.999971026 1.480213455 0.114330995 0.40196894 49153608.45 28279643.03 13147.25468 0.0942226 9.17E-11 10.03774723 0.480242429 SAS(ph)PHDVDLCLVSPCEFEHRK ddPTM_HeLa_A485_30min_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.142)AS(0.858)PHDVDLCLVSPCEFEHRK;S(0.166)AS(0.834)PHDVDLCLVSPCEFEHRK ; 171.08 6.98E-14 1491400000 545310 602080 603240 577600 873560 722110 933130 883460 636760 919590 TRUE FALSE FALSE 666612.3282 672488.0186 826403.5789 609152.8254 786585.2991 759918.563 733759.1525 666790.0498 764551.8913 690353.1368 0.965610631 0.974121769 1.197073693 0.882378587 1.13939556 1.100767886 1.06287509 0.965868067 1.10747942 1 19.39697501 -4.567249162 24.99982202 1.056333211 0.967735767 0.142957669 0.085418095 207.990296 117188.0978 0.020581529 0.054453657 2.71E-05 4.567249162 -0.088597443 SAS(ph)PHDVDLCLVSPCEFEHRK ddPTM_HeLa_A486_30min_R1 1 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.033)AS(0.967)PHDVDLCLVSPCEFEHRK 137.24 3.63E-07 388270000 211350 256210 155850 67283 339200 255350 319200 344610 197650 301880 TRUE FALSE FALSE 196535.4564 235906.9865 216199.2938 156638.2243 296654.3731 223847.5132 239332.7838 266149.8258 214782.4611 226287.2831 0.868521879 1.042511021 0.955419548 0.692209576 1.31096352 0.989218263 1.057650172 1.176159005 0.949158336 1 17.78779598 -5.758653628 24.99992164 1.083623748 0.905279813 0.34640668 0.127672897 90.06580341 808261.414 0.037612526 0.046399938 1.74E-06 5.758653628 -0.178343935 SAS(ph)PPKAK ddPTM_HeLa_A485_30min_R1 2 SASPPKAK 8 1 A0A087WWJ1;P52701-2;P52701;P52701-3;F8WAX8;F8W7G9 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 SAS(1)PPKAK;S(0.002)AS(0.998)PPKAK ; 93.556 0.0016244 1864740000 2471200 1847020 600300 3839100 1183280 4307600 3493400 6908900 1833610 4696100 TRUE FALSE FALSE 3020909.914 2063012.922 822375.9506 4048820.312 1065468.488 4533139.275 2747006.552 5214481.442 2201598.708 3525448.695 0.856886648 0.585177406 0.233268449 1.148455321 0.302222094 1.285833284 0.779193456 1.479097242 0.624487519 1 21.74937546 -6.26904741 24.99716972 1.047757817 0.630273938 0.277491081 0.329154899 760.5662367 2498931.637 0.10778207 0.096845422 5.38E-07 6.26904741 -0.417483879 SAS(ph)PPQKR ddPTM_HeLa_A485_30min_R1 1 SASPPQKR 8 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 S(0.002)AS(0.998)PPQKR 85.958 0.0027319 162390000 100090 86928 32975 135990 46231 126270 77613 136580 84574 140450 TRUE FALSE FALSE 122354.6752 97093.47343 45173.8247 143418.7894 41628.07931 132881.3019 61030.34851 103083.5409 101547.226 105438.3998 1.16043752 0.92085496 0.428438072 1.360214017 0.394809475 1.260274266 0.578824685 0.977666022 0.963095288 1 16.68604085 SAS(ph)PSNIK ddPTM_HeLa_A486_30min_R1 1 SASPSNIK 8 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 0 SAS(0.973)PS(0.027)NIK 92.428 0.0035423 78233000 205070 198640 139370 71945 219540 204910 243730 214050 149870 259520 TRUE FALSE FALSE 190695.652 182899.043 193337.7965 167491.5959 192003.2461 179630.2876 182746.1761 165315.4877 162860.8523 194534.5028 0.980266478 0.940188195 0.993848359 0.860986578 0.986988135 0.923385235 0.939402386 0.849800345 0.83718235 1 17.56966653 -7.150846541 6.51993942 0.882908953 0.945895225 0.142340487 0.054618162 0.363105794 18.59664921 0.024638151 0.014119273 7.07E-08 7.150846541 0.062986272 SAS(ph)PSTQQEKHPTHHER ddPTM_HeLa_A485_30min_R1 2 SASPSTQQEKHPTHHER 17 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 S(0.127)AS(0.839)PS(0.034)TQQEKHPTHHER;S(0.137)AS(0.83)PS(0.032)T(0.001)QQEKHPTHHER ; 105.67 0.00012765 273710000 106139 179397 139565 79864 200902 175049 227410 282500 134506 130452 TRUE FALSE FALSE 129749.2544 200375.9186 191195.9013 84226.76809 180899.4915 184214.295 178821.9957 213216.4321 161500.1204 97932.71719 1.324881593 2.04605697 1.952318967 0.860047291 1.847181378 1.881029142 1.825967877 2.177172636 1.649092612 1 16.57950329 SAS(ph)PSVGEER ddPTM_HeLa_A485_30min_R1 1 SASPSVGEER 10 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 S(0.048)AS(0.95)PS(0.002)VGEER 93.839 0.0019421 727480000 560570 819510 345560 196130 314090 881040 414150 783580 802800 275480 TRUE FALSE FALSE 685266.8626 915344.5657 473397.024 206844.0853 282818.0968 927169.8921 325663.4692 591405.7764 963914.5963 206807.9058 3.313542873 4.42606177 2.289066378 1.000174942 1.367540064 4.483242013 1.574714796 2.8596865 4.660917543 1 17.65793181 -7.525633779 24.98517038 3.140405878 2.620125474 0 1.396510774 481.2936812 4364524.287 0.943558691 0.361014513 2.98E-08 7.525633779 -0.520280404 SAS(ph)PSVPGPTKPKPK ddPTM_HeLa_A485_30min_R1 1 SASPSVPGPTKPKPK 15 2 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ6 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 S(0.049)AS(0.827)PS(0.125)VPGPTKPKPK 129.11 9.26E-06 2686200000 5126500 3812400 2284500 6462600 5340400 5913400 8587300 9715400 4022900 8733700 TRUE FALSE FALSE 6266872.239 4258227.017 3129631.616 6815635.474 4808691.025 6223016.48 6752553.203 7332682.917 4830259.13 6556549.322 0.955818668 0.649461601 0.477329074 1.039515626 0.733417959 0.94912982 1.029894365 1.118375316 0.736707511 1 22.6445053 -5.855973782 1.266717523 0.976409269 0.717266578 0.2372286 0.171535515 0.599318098 2.022647283 0.071276296 0.093014817 1.39E-06 5.855973782 -0.259142691 SAS(ph)PSVPGPTKPKPK ddPTM_HeLa_A486_30min_R1 2 SASPSVPGPTKPKPK 15 2 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ6 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 S(0.012)AS(0.742)PS(0.246)VPGPTKPKPK;S(0.013)AS(0.976)PS(0.011)VPGPTKPKPK ; 147.92 2.98E-08 7962400000 9185200 9188600 3678000 4230900 7928300 10605500 13096100 12228000 7773100 13785400 TRUE FALSE FALSE 8541364.912 8460461.872 5102220.1 9849749.018 6933858.686 9297101.239 9819317.264 9443951.335 8446878.567 10333446.11 0.82657468 0.818745439 0.493757847 0.953191115 0.671011259 0.899709655 0.950246138 0.9139208 0.81743094 1 23.30081812 -6.355599389 7.079808609 0.91434949 0.753344423 0.32080639 0.119106639 0.335928539 21.89270352 0.04106101 0.036142772 4.41E-07 6.355599389 -0.161005067 SAS(ph)PTVPR ddPTM_HeLa_A485_30min_R1 5 SASPTVPR 8 0 Q92817;K7EKI0;K7EQ87 Q92817 EVPL Envoplakin 1 0 S(0.428)AS(0.565)PT(0.007)VPR;S(0.014)AS(0.977)PT(0.009)VPR;S(0.001)AS(0.968)PT(0.032)VPR;S(0.003)AS(0.991)PT(0.006)VPR;S(0.008)AS(0.987)PT(0.005)VPR ;;;; 131.22 0.00053834 6277750000 5354300 7713330 7155010 4752920 8414070 7111570 7766520 8691310 6308790 6329580 TRUE FALSE FALSE 6545345.563 8615336.846 9801945.944 5012559.985 7576335.647 7483920.809 6107139.555 6559752.595 7574906.285 4751732.193 1.377465164 1.81309394 2.062815316 1.054891097 1.594436584 1.574987921 1.285244897 1.380497117 1.594135776 1 22.1800221 -11.77559515 0.11355995 3.01E-12 1.876076409 0.286166699 0.261074356 111.0283878 1.428687274 31.74567084 3.577324829 1.68E-12 11.77559515 1.876076409 SAS(ph)PTVPR ddPTM_HeLa_A486_30min_R1 6 SASPTVPR 8 0 Q92817;K7EKI0;K7EQ87 Q92817 EVPL Envoplakin 1 0 S(0.166)AS(0.778)PT(0.055)VPR;S(0.047)AS(0.612)PT(0.34)VPR;S(0.094)AS(0.86)PT(0.046)VPR;S(0.011)AS(0.914)PT(0.076)VPR;S(0.24)AS(0.701)PT(0.059)VPR;S(0.142)AS(0.852)PT(0.006)VPR ;;;;; 115.71 0.00096894 6920540000 7701230 9489490 7908950 2437200 10689670 7782180 8450540 9162120 7742120 7784150 TRUE FALSE FALSE 7161413.546 8737508.252 10971507.25 5673924.769 9348871.911 6822093.755 6336125.511 7076105.284 8413213.195 5834948.174 1.227331132 1.49744402 1.880309289 0.972403627 1.602220214 1.169178123 1.085892337 1.212710906 1.441865968 1 22.47628841 -5.925508542 1.186319502 1.195671727 1.480275398 0.17209631 0.250771218 0.83806395 2.490559797 0.110044697 0.136009623 1.19E-06 5.925508542 0.284603671 SAS(ph)PYHGFTIVNR ddPTM_HeLa_A486_30min_R1 1 SASPYHGFTIVNR 13 0 Q9NPI6-2;Q9NPI6;A0A087WT55;A0A087WVE6;A0A087WXD0 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 0 S(0.215)AS(0.785)PYHGFTIVNR 68.481 0.0086841 95071000 92296 105340 95170 20771 123790 84623 87013 97638 90500 75701 TRUE FALSE FALSE 85826.52702 96992.47476 132022.3727 48355.93771 108263.1039 74183.07464 65241.42707 75407.95882 98344.61287 56744.97687 1.512495586 1.709269791 2.326591357 0.852162436 1.907888766 1.307306457 1.149730437 1.328892229 1.733098122 1 15.79220507 -5.260560367 24.99999607 1.355460562 1.835433966 0.315726753 0.351317563 102.7082347 2921082.843 0.094668601 0.152584403 5.49E-06 5.260560367 0.479973404 SAS(ph)QDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR ddPTM_HeLa_A485_30min_R1 2 SASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR 35 2 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.016)AS(0.984)QDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR;S(0.14)AS(0.86)QDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR ; 309.02 1.34E-110 865700000 81959 86646 91038 79643 127318 101226 113148 131811 109609 124529 TRUE FALSE FALSE 100190.4968 96778.49598 124716.7446 83993.69542 114641.7729 106526.0368 88973.00547 99484.14558 131606.5209 93486.21209 1.071714155 1.035216786 1.334065653 0.898460784 1.226296053 1.139483935 0.951723291 1.064158482 1.407763968 1 16.51246598 SAS(ph)QDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR ddPTM_HeLa_A486_30min_R1 2 SASQDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR 35 2 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.001)AS(0.999)QDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR;S(0.418)AS(0.582)QDRLEEVAAPRPWPCSTSQDALSQLGQEGWHR ; 273.06 1.05E-78 624510000 66327 81229 64206 27110 92750 65654 93878 86161 68238 72935 TRUE FALSE FALSE 61677.81981 74792.11821 89068.2827 63113.45006 81116.43014 57554.277 70388.73146 66544.02118 74152.92478 54671.60127 1.128150966 1.368025016 1.629150795 1.154410125 1.483703207 1.052727114 1.287482529 1.217158811 1.356333509 1 15.73850401 -6.255944356 24.99589476 1.202859203 1.357883675 0.201077811 0.166826056 842.7931263 3833721.802 0.054569014 0.053074355 5.55E-07 6.255944356 0.155024473 SAS(ph)QS(ph)SLDKLDQELK ddPTM_HeLa_A485_30min_R1 3 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.022)AS(0.977)QS(0.559)S(0.442)LDKLDQELK;S(0.424)AS(0.576)QS(0.538)S(0.462)LDKLDQELK;S(0.101)AS(0.899)QS(0.558)S(0.442)LDKLDQELK ;; 144.01 9.74E-08 841930000 1733960 860100 521820 4143200 1314850 1235440 2595900 1658310 941180 5340000 TRUE FALSE FALSE 2119673.42 960681.2131 714862.9327 4369532.525 1183938.917 1300125.728 2041264.758 1251606.872 1130066.193 4008836.275 0.528750309 0.23964092 0.178321808 1.089975301 0.29533232 0.324314998 0.509191351 0.31221202 0.281893825 1 21.93475207 -10.12424824 4.292216104 1.00008171 0.418467275 0.331634342 0.247978689 163579959.9 349032706.4 231433.3875 0.062040629 7.51E-11 10.12424824 -0.581614435 SAS(ph)QS(ph)SLDKLDQELK ddPTM_HeLa_A486_30min_R1 1 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.005)AS(0.99)QS(0.695)S(0.309)LDKLDQELK 117.29 0.0001337 208740000 592010 525080 136220 467230 355720 736630 1046300 869480 349280 1492900 TRUE FALSE FALSE 550513.1561 483470.7485 188968.0321 1087735.052 311102.2806 645752.0801 784504.6734 671518.3846 379555.8716 1119068.123 0.491938913 0.432029774 0.168861956 0.972000748 0.2780012 0.577044477 0.701033885 0.600069264 0.339171373 1 20.09386643 -14 0.239554179 3.720672 0.46445008 0.308660396 0.217974577 211.3270468 2.110173022 280.7484253 0.338728063 1.00E-14 14 -3.25622192 SAS(ph)QS(ph)SLDKLDQELKEQQK ddPTM_HeLa_A485_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.326)AS(0.667)QS(0.65)S(0.356)LDKLDQELKEQQK 69.72 0.020858 162890000 0 0 0 4225.5 0 3564.6 7523 6493.2 0 7657.7 TRUE FALSE FALSE 0 0 0 4456.328365 0 3751.236944 5915.649593 4900.732519 0 5748.77632 0 0 0 0.775178598 0 0.652527901 1.029027616 0.852482728 0 1 12.48903918 -5.624954361 0.890282249 0.703716476 4.44E-17 0.381992883 0.347626429 0.731958407 1.217063161 0.169076349 0.328043666 2.37E-06 5.624954361 -0.703716476 SAS(ph)QS(ph)SLDKLDQELKEQQK ddPTM_HeLa_A486_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.025)AS(0.975)QS(0.561)S(0.439)LDKLDQELKEQQK 158.37 1.55E-09 354950000 557650 383690 106420 569220 345040 636570 1075900 949120 275370 1709800 TRUE FALSE FALSE 518561.6147 353285.007 147628.674 1325172.927 301761.8658 558036.4656 806698.4403 733026.0951 299239.2933 1281654.951 0.404603138 0.275647519 0.115185974 1.033954518 0.235447041 0.435403043 0.629419361 0.571937162 0.233478826 1 20.28957648 -14 0.262708721 4.577569688 0.402440687 0.302925095 0.251766762 256.0046123 2.512012525 495.9771013 0.328200048 1.00E-14 14 -4.175129001 SAS(ph)QSS(ph)LDKLDQELK ddPTM_HeLa_A485_30min_R1 1 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.02)AS(0.902)QS(0.266)S(0.812)LDKLDQELK 138.04 6.36E-06 227570000 815980 393750 250370 1957100 574380 583500 1190200 756740 417610 2621200 TRUE FALSE FALSE 997491.9359 439795.6373 342992.2818 2064011.417 517192.7104 614051.1577 935904.047 571148.3285 501420.4965 1967783.08 0.506911532 0.223498028 0.174303908 1.048901903 0.262830144 0.31205226 0.475613423 0.290249639 0.254814924 1 20.90813976 -10.37990627 3.291320062 1.005442307 0.39514637 0.362840084 0.240770783 580578638.6 799445021 30499848.05 0.063037769 4.17E-11 10.37990627 -0.610295937 SAS(ph)QSS(ph)LDKLDQELK ddPTM_HeLa_A486_30min_R1 1 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.008)AS(0.992)QS(0.184)S(0.816)LDKLDQELK 147.9 7.36E-08 721410000 745370 675290 187280 554790 413470 988900 1342800 1047100 512820 1912100 TRUE FALSE FALSE 693123.4121 621777.561 259799.8315 1291579.158 361608.7371 866899.5724 1006817.237 808698.188 557271.6505 1433297.714 0.483586491 0.433809079 0.181260201 0.901124131 0.252291435 0.604828685 0.702448087 0.564222059 0.388803837 1 20.45090688 -14 0.200036389 3.2008085 0.427499445 0.358158783 0.199599947 155.4398708 1.537887982 137.1139203 0.468299804 1.00E-14 14 -2.773309055 SAS(ph)QSS(ph)LDKLDQELKEQQK ddPTM_HeLa_A486_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.11)AS(0.868)QS(0.214)S(0.809)LDKLDQELKEQQK 73.546 0.016597 128070000 323960 218900 65418 323120 184760 333570 662090 606730 161070 881480 TRUE FALSE FALSE 301252.0769 201553.5668 90749.60155 752239.6896 161585.678 292417.5249 496428.0791 468590.8238 175031.6773 660751.6705 0.455923292 0.305036787 0.137342977 1.138460519 0.24454827 0.442552835 0.751308095 0.709178417 0.26489782 1 19.33374864 -14 0.128015144 2.548622032 0.300281268 0.215643112 0.285563808 234.4811881 1.901505383 94.67349748 2.278741444 1.00E-14 14 -2.248340764 SAS(ph)QSSLDKLDQELK ddPTM_HeLa_A485_30min_R1 2 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.137)AS(0.767)QS(0.042)S(0.054)LDKLDQELK;S(0.006)AS(0.883)QS(0.099)S(0.013)LDKLDQELK ; 169.06 5.23E-11 59690000 119660 89550 69835 183775 117208 88667 162748 136469 100501 257530 TRUE FALSE FALSE 146277.9542 100022.0935 95669.87258 193814.1629 105538.36 93309.46701 127975.5603 102999.7638 120670.6289 193332.5105 0.756613328 0.517357858 0.494846275 1.002491316 0.545890392 0.482637228 0.66194537 0.532759666 0.624161082 1 17.56072473 -10.49909004 2.450715957 1.022428317 0.620412793 0.360735818 0.14995987 3469219.76 3162402.147 521906.788 0.039181534 3.17E-11 10.49909004 -0.402015525 SAS(ph)QSSLDKLDQELK ddPTM_HeLa_A486_30min_R1 2 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.002)AS(0.993)QS(0.004)S(0.002)LDKLDQELK;S(0.019)AS(0.98)QS(0.001)SLDKLDQELK ; 138.91 1.23E-05 382520000 206403 191573 101694 101908 178970 254720 289520 267690 151675 321320 TRUE FALSE FALSE 191935.2156 176392.0578 141072.6403 237246.9741 156521.9138 223295.2362 217079.0338 206742.8306 164822.3111 240859.3806 0.796876647 0.732344563 0.585705402 0.985002011 0.649847697 0.927077184 0.901268754 0.858354905 0.684309288 1 17.87783159 -5.257735178 24.99380292 0.848088667 0.70771245 0.256351676 0.118558392 477.891202 3224519.748 0.031507355 0.051973088 5.52E-06 5.257735178 -0.140376217 SAS(ph)QSSLDKLDQELKEQQK ddPTM_HeLa_A485_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 SAS(0.997)QS(0.002)S(0.001)LDKLDQELKEQQK 206.46 4.57E-26 266700000 392150 262060 123980 513420 389610 460510 1008200 1168100 328470 938050 TRUE FALSE FALSE 479382.4146 292705.6374 169845.3612 541466.8346 350819.0604 484621.5915 792789.8338 881621.6435 394390.9161 704211.3985 0.680736517 0.415650241 0.241185192 0.76889814 0.498172937 0.688176296 1.12578387 1.25192754 0.560046198 1 19.42564905 -6.57977865 4.152896787 1.003125897 0.51804883 0.512108947 0.21273 0.173235835 6.17711459 0.084070407 0.064949361 2.63E-07 6.57977865 -0.485077067 SAS(ph)QSSLDKLDQELKEQQK ddPTM_HeLa_A486_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.009)AS(0.989)QS(0.001)SLDKLDQELKEQQK 196.81 1.75E-20 287240000 280620 172320 62034 175440 171130 248010 401930 391810 126200 493740 TRUE FALSE FALSE 260949.9871 158664.7356 86055.22613 408433.1862 149665.2797 217413.0478 301362.8628 302603.4162 137139.1176 370104.2903 0.7050715 0.428702773 0.232516154 1.10356242 0.404386773 0.587437253 0.814264711 0.817616613 0.370541821 1 18.49757233 -14 0.147452237 2.311548487 0.491328287 0.17032352 0.249750551 241.1912329 2.12685143 93.59761873 1.319486038 1.00E-14 14 -1.8202202 SAS(ph)SLHICDSR ddPTM_HeLa_A485_30min_R1 1 SASSLHICDSR 11 0 Q5T760 Q5T760 SRSF11 1 0 S(0.265)AS(0.367)S(0.367)LHICDSR 111.79 0.00036152 289030000 250880 229050 203680 206630 345980 283740 357570 359960 241580 322970 TRUE FALSE FALSE 306687.3905 255835.405 279029.7078 217917.6737 311533.0164 298596.1877 281172.2484 271679.2456 290062.8901 242459.5228 1.264901403 1.055167485 1.150830063 0.898779603 1.284886701 1.231530047 1.159666757 1.120513818 1.196335317 1 17.88738439 -3.959367599 16.66412036 1.131158454 1.900582001 0.131669316 0.107816955 65351856.14 704869501 0.026890136 1552188133 0.000109808 3.959367599 0.769423546 SAS(ph)SSWLEGTSTQAK ddPTM_HeLa_A485_30min_R1 1 SASSSWLEGTSTQAK 15 0 K7EL81;Q9BZL4-3;Q9BZL4-5;Q9BZL4-2;Q9BZL4-4;Q9BZL4 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 S(0.001)AS(0.991)S(0.008)SWLEGTSTQAK 311.33 7.27E-78 365300000 366730 348010 281110 403230 452520 380850 496010 577990 314850 522770 TRUE FALSE FALSE 448307.8233 388706.7422 385104.287 425257.4339 407465.5199 400790.7171 390033.4115 436237.0462 378037.507 392453.0599 1.14232215 0.9904541 0.981274772 1.083588019 1.038252881 1.02124498 0.993834553 1.1115649 0.963268084 1 18.58216058 SAS(ph)TDLGTADVVLGR ddPTM_HeLa_A485_30min_R1 1 SASTDLGTADVVLGR 15 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 0 SAS(0.908)T(0.092)DLGTADVVLGR 182.37 8.73E-12 0 41209 59517 65918 70419 79221 64997 116250 139340 102380 126880 TRUE FALSE FALSE 50375.79988 66476.99542 90303.81128 74265.81166 71333.47908 68400.14242 91412.23782 105166.6465 122926.7269 95251.15105 0.528873398 0.697912778 0.948060053 0.779684139 0.748898867 0.718103053 0.959696936 1.104098432 1.290553716 1 16.53944891 -7.025773793 2.404641568 1.152379116 0.746432576 0.695722429 0.117534753 0.176416399 2.017038287 0.067361686 0.036192608 9.42E-08 7.025773793 -0.40594654 SAS(ph)TDLGTADVVLGR ddPTM_HeLa_A486_30min_R1 1 SASTDLGTADVVLGR 15 0 A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H7C0E9;Q9Y2K5-3;Q9Y2K5-2 A0A0U1RRA6 R3HDM2 R3H domain-containing protein 2 1 0 S(0.003)AS(0.957)T(0.04)DLGTADVVLGR 140.93 9.32E-07 67251000 86585 142170 73041 34730 117490 134210 160210 192710 89857 134220 TRUE FALSE FALSE 80515.83863 130903.9314 101324.4313 80853.19516 102753.3086 117652.5347 120123.7635 148834.1398 97645.87711 100610.4384 0.800273211 1.301096919 1.007096609 0.803626308 1.021298687 1.169386961 1.19394931 1.479311116 0.970534258 1 16.61842047 -6.269658879 4.041368732 1.197417031 0.993288989 0.176158446 0.183964722 0.353746891 13.78777029 0.064956081 0.060224651 5.37E-07 6.269658879 -0.204128042 SAS(ph)TEKLEQGTSALIR ddPTM_HeLa_A485_30min_R1 2 SASTEKLEQGTSALIR 16 1 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 SAS(0.954)T(0.046)EKLEQGTSALIR;SAS(0.971)T(0.029)EKLEQGTSALIR ; 202.86 1.59E-25 1549510000 772370 713410 616030 980740 1275740 939940 1561710 1626140 764260 1491460 TRUE FALSE FALSE 944181.0419 796837.0937 843925.1321 1034315.343 1148722.846 989153.805 1228037.901 1227326.615 917639.9718 1119666.47 0.843269908 0.711673623 0.753729039 0.923770936 1.025950921 0.883436122 1.096789029 1.096153764 0.819565465 1 20.09463761 -5.388844366 3.399899808 0.991464874 0.763154039 0.558399908 0.086151708 0.176619899 3.765003438 0.025136138 0.039060465 4.08E-06 5.388844366 -0.228310835 SAS(ph)TEKLEQGTSALIR ddPTM_HeLa_A486_30min_R1 2 SASTEKLEQGTSALIR 16 1 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 SAS(0.986)T(0.014)EKLEQGTSALIR;SAS(0.957)T(0.043)EKLEQGTSALIR ; 219.87 4.65E-34 1572810000 881540 852030 608950 551280 1108130 1012550 1476270 1413160 702720 1135100 TRUE FALSE FALSE 819748.5983 784512.0398 844751.7482 1283407.7 969138.0025 887631.8759 1106891.632 1091414.317 763632.3354 850863.5717 0.963431301 0.922018601 0.992816917 1.508358969 1.139005165 1.043212925 1.300903774 1.282713649 0.897479174 1 19.6985683 -5.024763616 24.81748628 1.18392433 0.946398035 0.25305037 0.163487694 809.7056803 811467.8414 0.043631338 0.076056113 9.45E-06 5.024763616 -0.237526295 SAS(ph)TLCLPSVGAARPQVK ddPTM_HeLa_A485_30min_R1 2 SASTLCLPSVGAARPQVK 18 1 Q8IUC4-2;A8MT19;Q8IUC4 Q8IUC4-2 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 0 SAS(0.55)T(0.45)LCLPSVGAARPQVK;S(0.001)AS(0.708)T(0.291)LCLPSVGAARPQVK ; 238.63 1.41E-45 1638230000 692150 582900 562950 757290 908610 685900 1002270 855840 683280 986070 TRUE FALSE FALSE 846116.3796 651065.0844 771208.6313 798658.8351 818145.5981 721812.6634 788126.8267 645943.8981 820408.0286 740260.8963 1.142997535 0.8795076 1.041806524 1.078888321 1.105212503 0.975078742 1.064660893 0.872589517 1.108268764 1 19.4976743 SAS(ph)TLCLPSVGAARPQVK ddPTM_HeLa_A486_30min_R1 1 SASTLCLPSVGAARPQVK 18 1 Q8IUC4-2;A8MT19;Q8IUC4 Q8IUC4-2 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 0 SAS(0.738)T(0.262)LCLPSVGAARPQVK 219.61 1.14E-34 716320000 286330 386580 246270 120690 389590 385680 456350 432700 298500 406620 TRUE FALSE FALSE 266259.7456 355945.9929 341632.3393 280972.4193 340723.9894 338098.7229 342166.4032 334183.6558 324374.2203 304799.7053 0.87355644 1.167802943 1.120842092 0.921826414 1.117861938 1.109248851 1.122594272 1.09640413 1.064220912 1 18.21750198 SAS(ph)VNKEPVSLPGIMR ddPTM_HeLa_A485_30min_R1 5 SASVNKEPVSLPGIMR 16 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 SAS(1)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;S(0.001)AS(0.999)VNKEPVSLPGIMR;S(0.009)AS(0.991)VNKEPVSLPGIMR ;;;; 213.48 2.47E-26 13475920000 3924420 3786870 2829740 4856580 4987460 4882180 7337080 7700100 4593450 8518930 TRUE FALSE FALSE 4797393.69 4229711.505 3876578.581 5121882.668 4490890.97 5137803.396 5769452.92 5811638.402 5515313.281 6395317.53 0.750141595 0.661376309 0.606158891 0.800880119 0.70221548 0.803369555 0.902137055 0.908733362 0.862398662 1 22.60858456 -6.569823082 0.736653195 0.951064611 0.674602057 0.767173751 0.05606354 0.327226826 0.366000914 0.044756168 0.033052897 2.69E-07 6.569823082 -0.276462553 SAS(ph)VNKEPVSLPGIMR ddPTM_HeLa_A486_30min_R1 6 SASVNKEPVSLPGIMR 16 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 SAS(1)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;S(0.001)AS(0.999)VNKEPVSLPGIMR;SAS(1)VNKEPVSLPGIMR;S(0.142)AS(0.858)VNKEPVSLPGIMR;S(0.111)AS(0.889)VNKEPVSLPGIMR ;;;;; 223.51 3.45E-34 13241390000 5047710 4681920 2390980 1890490 4207770 5169460 6157560 6291330 4067110 6857690 TRUE FALSE FALSE 4693891.595 4310907.608 3316831.489 4401156.26 3679992.251 4531704.584 4616873.36 4858931.498 4419650.369 5140479.788 0.913123247 0.838619698 0.645237726 0.856176163 0.715884976 0.881572299 0.898140553 0.945229181 0.859773903 1 22.29347159 -6.462680574 5.548703283 0.917568414 0.791400648 0.396007766 0.07723206 0.23389159 14.90778656 0.027793395 0.024014671 3.45E-07 6.462680574 -0.126167766 SAS(ph)WGSADQLK ddPTM_HeLa_A485_30min_R1 4 SASWGSADQLK 11 0 Q86VQ1;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 SAS(0.999)WGS(0.001)ADQLK;SAS(1)WGSADQLK;SAS(1)WGSADQLK;SAS(1)WGSADQLK ;;; 274.59 1.11E-34 5983500000 4092990 3593040 3005780 5561910 4960000 3730740 5450400 4973430 3595300 7023760 TRUE FALSE FALSE 5003461.505 4013214.773 4117743.103 5865743.06 4466164.984 3926075.778 4285877.514 3753688.494 4316843.732 5272865.895 0.948907407 0.76110693 0.780930747 1.112439265 0.847009022 0.744581003 0.81281747 0.711887723 0.818690219 1 22.33015587 -6.000232656 25 0.798901346 0.894477417 0.092611996 0.115194844 18.21069713 1957234.946 0.036088202 0.040488327 9.99E-07 6.000232656 0.095576071 SAS(ph)WGSADQLK ddPTM_HeLa_A486_30min_R1 7 SASWGSADQLK 11 0 Q86VQ1;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 SAS(0.993)WGS(0.007)ADQLK;SAS(0.999)WGS(0.001)ADQLK;SAS(1)WGSADQLK;SAS(1)WGSADQLK;SAS(1)WGSADQLK;S(0.008)AS(0.991)WGS(0.001)ADQLK;SAS(1)WGSADQLK ;;;;;; 275.8 1.02E-34 7648430000 5669090 5909050 3297980 2352066 5389960 6264940 7370180 7102500 4625590 7514090 TRUE FALSE FALSE 5271716.066 5440795.358 4575046.179 5475728.515 4713900.957 5492035.4 5526083.01 5485415.796 5026539.866 5632512.955 0.935943886 0.965962333 0.812256663 0.972164389 0.836909031 0.975059524 0.981104359 0.973884275 0.892415145 1 22.4253473 SAS(ph)WGSADQLKEQIAK ddPTM_HeLa_A485_30min_R1 2 SASWGSADQLKEQIAK 16 1 Q86VQ1;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 SAS(1)WGSADQLKEQIAK;S(0.005)AS(0.995)WGSADQLKEQIAK ; 183.6 4.95E-18 805650000 583860 773080 486110 539020 921640 887290 1297910 1835050 674870 855630 TRUE FALSE FALSE 713737.6427 863484.9811 665942.3177 568465.2977 829878.2855 933747.1324 1020600.926 1385001.11 810310.2187 642337.1877 1.111157281 1.344286144 1.036748814 0.884995153 1.291966745 1.453671296 1.588886562 2.156190139 1.26150289 1 19.2929713 -6.236575589 2.453776803 1.58714218 1.108938347 0.256046652 0.299926046 0.342230683 4.063771695 0.111879417 0.105181017 5.80E-07 6.236575589 -0.478203834 SAS(ph)WGSADQLKEQIAK ddPTM_HeLa_A486_30min_R1 1 SASWGSADQLKEQIAK 16 1 Q86VQ1;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.012)AS(0.987)WGS(0.002)ADQLKEQIAK 154.55 1.38E-08 440140000 528900 417080 275910 199630 505000 465060 643410 682330 318850 618870 TRUE FALSE FALSE 491826.8412 384029.0618 382749.7411 464748.7287 441658.1911 407685.6256 482422.0127 526978.3542 346488.1747 463900.9238 1.060198021 0.827825603 0.825067857 1.001827556 0.952052838 0.878820465 1.039924665 1.135971771 0.746901239 1 18.82345719 -6.758274594 24.99987227 0.992030398 0.920188678 0.051328529 0.113902545 225.4960262 1781300.232 0.044142069 0.03271174 1.74E-07 6.758274594 -0.07184172 SAS(ph)WGSTDQLK ddPTM_HeLa_A485_30min_R1 3 SASWGSTDQLK 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 SAS(0.999)WGS(0.001)TDQLK;SAS(0.999)WGSTDQLK;SAS(1)WGSTDQLK ;; 237.27 1.06E-21 1388400000 1926480 1640280 1475340 2432180 2013360 1850230 2614940 2160620 1674010 3205800 TRUE FALSE FALSE 2355018.83 1832096.477 2021129.66 2565043.835 1812902.809 1947105.182 2056236.707 1630724.557 2009968.452 2406653.058 0.978545213 0.761263229 0.839809317 1.065813714 0.753287975 0.809051049 0.854396815 0.677590213 0.835171669 1 21.19859675 SAS(ph)WGSTDQLK ddPTM_HeLa_A486_30min_R1 4 SASWGSTDQLK 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 SAS(1)WGSTDQLK;S(0.001)AS(0.999)WGSTDQLK;SAS(0.999)WGSTDQLK;SAS(1)WGSTDQLK ;;; 226.42 4.18E-18 2289190000 3242210 3262830 1775030 1212480 2837660 3492810 4056840 3837170 2684740 4222270 TRUE FALSE FALSE 3014947.822 3004271.468 2462369.153 2822714.715 2481734.223 3061902.614 3041775.723 2963530.156 2917455.425 3164986.11 0.95259433 0.949221059 0.778003147 0.891856905 0.784121679 0.967430032 0.961070797 0.93634855 0.92179091 1 21.59376774 -6.311714799 24.99956653 0.953583798 0.871470548 0.358303334 0.05754814 456.3882761 226938.7533 0.02086999 0.018405621 4.88E-07 6.311714799 -0.082113251 SASAPT(ph)LAET(ph)EKETAEHLDLAGASSR ddPTM_HeLa_A486_30min_R1 1 SASAPTLAETEKETAEHLDLAGASSR 26 1 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 2 0 S(0.147)AS(0.158)APT(0.575)LAET(0.61)EKET(0.51)AEHLDLAGASSR 49.199 0.03319 116010000 2415 2164.6 1311.3 1987 2360.8 3007.6 2604.6 3122.8 0 4256.2 TRUE FALSE FALSE 2245.720971 1993.069213 1819.070478 4625.836417 2064.68645 2636.552891 1952.901531 2411.80661 0 3190.419817 0.70389513 0.624704373 0.570166493 1.449914645 0.647151964 0.826396851 0.612114281 0.755952743 0 1 11.63953056 -7.06827787 1.843722749 0.521955771 0.807566742 0.083497894 0.330375056 0.838696759 5.506008009 0.210560765 0.100400828 8.55E-08 7.06827787 0.285610971 SASAPT(ph)LAETEK ddPTM_HeLa_A485_30min_R1 1 SASAPTLAETEK 12 0 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.001)AS(0.321)APT(0.666)LAET(0.013)EK 89.43 0.0031474 0 125690 181660 177810 176530 180190 166250 197630 177160 134810 290490 TRUE FALSE FALSE 153649.3069 202903.5568 243589.3183 186173.3869 162249.6509 174954.5929 155404.736 133711.2322 161865.1304 218076.1891 0.704567094 0.930425085 1.116991815 0.853707999 0.744004431 0.80226362 0.712616708 0.613139989 0.742241192 1 17.73447273 -5.607363823 4.519392114 0.749411244 0.928203682 0.195524306 0.131110033 0.284171639 10.59003767 0.039610371 0.052059722 2.47E-06 5.607363823 0.178792438 SASEPS(ph)LHR ddPTM_HeLa_A485_30min_R1 1 SASEPSLHR 9 0 P04049;P04049-2;H7C155;Q96II5;P10398 P04049;Q96II5 RAF1;ARAF RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase A-Raf 1 0 SAS(0.498)EPS(0.502)LHR 153.7 5.07E-05 4479400000 2489500 3739400 3728100 1912700 4535000 3378400 3958400 4068200 3319800 3356800 TRUE FALSE FALSE 3043280.686 4176690.302 5107279.329 2017185.958 4083479.477 3555287.8 3112655.503 3070467.571 3986053.409 2520011.537 1.207645537 1.657409198 2.026688868 0.800466953 1.620420945 1.410822033 1.2351751 1.218433934 1.581759984 1 21.26499891 -12.85505861 0.116260637 3.42E-12 1.653078519 0.134236251 0.315740757 229.4474789 2.283057267 59.06127681 3.601699817 1.40E-13 12.85505861 1.653078519 SASEPS(ph)LNR ddPTM_HeLa_A486_30min_R1 2 SASEPSLNR 9 0 H7C560;P15056;A0A2U3TZI2;A0A2R8Y8E0 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 SAS(0.224)EPS(0.776)LNR;S(0.01)AS(0.321)EPS(0.669)LNR ; 123.62 0.00031517 946840000 870380 1031110 880990 320289 1280120 1055140 1062930 1101290 806930 1056550 TRUE FALSE FALSE 809370.8566 949401.0884 1222132.922 745648.9785 1119555.413 924967.5547 796973.6715 850550.308 876875.3421 791983.003 1.021954832 1.198764474 1.54313024 0.941496188 1.413610404 1.167913391 1.006301484 1.073950204 1.107189597 1 19.59510994 -6.583242705 5.916164702 1.055307831 1.230711446 0.205566734 0.1636979 0.328541958 22.85350252 0.0616053 0.047611281 2.61E-07 6.583242705 0.175403616 SASLSSLLITPFPS(ph)PNSSLTR ddPTM_HeLa_A485_30min_R1 1 SASLSSLLITPFPSPNSSLTR 21 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40;Q8TF40-2 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 SASLSSLLITPFPS(0.989)PNS(0.004)S(0.004)LT(0.004)R 133.93 6.80E-11 0 30249 34687 33538 31965 43853 37351 48999 50645 31200 47017 TRUE FALSE FALSE 36977.78569 38743.34291 45945.10183 33711.16701 39486.84134 39306.6406 38529.96336 38224.23434 37461.55382 35296.52718 1.047632406 1.097653112 1.301689019 0.955084528 1.118717463 1.113612124 1.091607771 1.08294604 1.061338234 1 15.10723862 -8.412936707 0.433010055 0.991082134 1.115412735 0.136273623 0.080558506 4.037017493 1.533264293 0.151251182 0.053775372 3.86E-09 8.412936707 0.1243306 SASNKS(ph)PLVLEANR ddPTM_HeLa_A486_30min_R1 1 SASNKSPLVLEANR 14 1 F8W6N3;Q92560 F8W6N3 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 SAS(0.002)NKS(0.998)PLVLEANR 149.36 3.03E-08 414670000 394900 411190 241200 143240 364010 484850 485740 465860 413230 501520 TRUE FALSE FALSE 367219.5493 378605.8069 334599.0996 333469.9589 318352.4715 425034.1366 364202.7144 359793.8477 449049.1091 375936.1277 0.976813672 1.007101417 0.890042417 0.887038873 0.846825958 1.130601997 0.968788812 0.95706111 1.194482456 1 18.52012804 -6.257838785 24.9939809 1.042415815 0.922647209 0.39244501 0.079720102 377.2625481 2618818.585 0.027430299 0.026401097 5.52E-07 6.257838785 -0.119768606 SASPS(ph)NIK ddPTM_HeLa_A486_30min_R1 1 SASPSNIK 8 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 0 S(0.001)AS(0.475)PS(0.524)NIK 69.276 0.017359 74298000 289190 294050 180720 85160 289390 266840 295000 291190 203110 268670 TRUE FALSE FALSE 268919.2744 270748.4071 250699.6238 198256.7837 253092.0077 233919.9938 221187.8798 224892.3936 220715.7383 201393.2833 1.335294157 1.344376549 1.244826142 0.984425997 1.256705306 1.161508418 1.098288266 1.116682692 1.09594389 1 17.61965604 -1 0.272658996 1.055661185 3.359339805 0.587372967 0.077972558 38.10288125 0.533612401 0.092321775 41.45007994 0.1 1 2.30367862 SASQS(ph)S(ph)LDKLDQELKEQQK ddPTM_HeLa_A485_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 2 0 S(0.069)AS(0.426)QS(0.608)S(0.898)LDKLDQELKEQQK 75.184 0.014773 122640000 202810 126940 63327 434620 214200 222500 554790 469800 121650 690910 TRUE FALSE FALSE 247924.3848 141784.5288 86754.29256 458362.1901 192873.4959 234149.7559 436254.5843 354580.8134 146064.0392 518678.8523 0.477992083 0.273357065 0.167260131 0.883710967 0.37185533 0.451434939 0.84108805 0.683623039 0.281607855 1 18.98448202 -14 0.077692893 2.568814603 2.68E-16 0.320396723 0.22691862 320.931697 1.769116892 88.28103923 8.788545914 1.00E-14 14 -2.568814603 SASQS(ph)SLDKLDQELKEQQK ddPTM_HeLa_A485_30min_R1 1 SASQSSLDKLDQELKEQQK 19 2 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.05)AS(0.381)QS(0.511)S(0.057)LDKLDQELKEQQK 100.64 0.0001557 89611000 36862 31148 12037 52065 44335 45105 93743 109610 33459 79131 TRUE FALSE FALSE 45061.82473 34790.48765 16489.9872 54909.17911 39920.85173 47466.62805 73714.04224 82727.97564 40173.9144 59405.098 0.758551475 0.585648182 0.277585388 0.924317625 0.672010536 0.799032905 1.240870645 1.392607342 0.676270484 1 15.85829912 -6.576601726 4.0437974 1.108247596 0.641550581 0.438120961 0.23013535 0.19896559 6.785847547 0.091908368 0.071099527 2.65E-07 6.576601726 -0.466697014 SASQSS(ph)LDKLDQELK ddPTM_HeLa_A485_30min_R1 4 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 SASQS(0.02)S(0.98)LDKLDQELK;SASQS(0.227)S(0.773)LDKLDQELK;SASQS(0.014)S(0.986)LDKLDQELK;SASQS(0.02)S(0.98)LDKLDQELK ;;; 303.7 5.20E-68 2383092000 1812952 960792 642119 3974110 1494003 1338821 2693557 1802397 1168747 5147200 TRUE FALSE FALSE 2216236.918 1073148.267 879665.5389 4191205.566 1345254.816 1408919.597 2118056.543 1360356.31 1403303.803 3864097.767 0.573545767 0.277722856 0.227650953 1.084653086 0.348142023 0.364617999 0.54813741 0.352050179 0.363164673 1 21.88170017 -10.70233599 2.893132352 1.074335875 0.459471451 0.326791788 0.232530799 112496469.5 102921697 61002997.73 0.06313015 1.98E-11 10.70233599 -0.614864424 SASQSS(ph)LDKLDQELK ddPTM_HeLa_A486_30min_R1 4 SASQSSLDKLDQELK 15 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 SASQS(0.362)S(0.638)LDKLDQELK;SASQS(0.105)S(0.895)LDKLDQELK;SASQS(0.016)S(0.984)LDKLDQELK;SASQS(0.077)S(0.923)LDKLDQELK ;;; 297.45 3.54E-66 1899290000 1992010 1800250 633506 1362480 1395550 2738920 3405530 2910490 1442620 4320080 TRUE FALSE FALSE 1852380.386 1657591.634 878816.4891 3171922.296 1220507.106 2401019.898 2553430.374 2247834.963 1567667.463 3238303.849 0.572021797 0.511870322 0.271381726 0.979501135 0.376897031 0.741443672 0.788508581 0.694139607 0.484101411 1 21.62680693 -14 0.101576338 2.183226237 0.358423888 0.279421207 0.195524523 242.1786505 1.66496443 61.34140867 3.091435908 1.00E-14 14 -1.824802349 SASS(ph)GAEGDVSSEREP ddPTM_HeLa_A485_30min_R1 3 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 0 SAS(0.009)S(0.991)GAEGDVSSEREP;SASS(1)GAEGDVSSEREP;SAS(0.001)S(0.999)GAEGDVSSEREP ;; 325.08 4.64E-78 2631210000 1189520 1616730 1580920 1450760 2258100 1716180 2182850 2323480 1689170 1881500 TRUE FALSE FALSE 1454124.62 1805792.51 2165768.096 1530011.345 2033275.635 1806036.531 1716466.265 1753642.887 2028170.925 1412476.676 1.029485757 1.278458285 1.533312466 1.083211759 1.439510945 1.278631047 1.215217422 1.241537589 1.435896931 1 20.42979561 -9.853203091 5.468909952 0.999999956 1.284578415 0.243931306 0.148703427 94136868.18 0.432014422 180.5186341 0.03452852 1.40E-10 9.853203091 0.284578459 SASS(ph)GAEGDVSSEREP ddPTM_HeLa_A486_30min_R1 4 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 0 SAS(0.074)S(0.926)GAEGDVSSEREP;SAS(0.035)S(0.965)GAEGDVSSEREP;SAS(0.037)S(0.963)GAEGDVSSEREP;SAS(0.205)S(0.795)GAEGDVSSEREP ;;; 270.74 3.03E-51 2768150000 1659980 1969910 1796690 700700 2329930 1845160 2246340 2341690 1768090 2034980 TRUE FALSE FALSE 1543623.974 1813807.157 2492416.485 1631265.011 2037688.454 1617522.919 1684281.973 1808538.306 1921349.465 1525407.763 1.011941864 1.189063804 1.633934576 1.069396034 1.335831968 1.060387235 1.104151961 1.185609743 1.259564499 1 20.54076352 -6.263551799 24.98252168 1.132431378 1.256272174 0.11793972 0.170474204 460.603803 5447290.396 0.059260175 0.054870085 5.45E-07 6.263551799 0.123840796 SASS(ph)SWLEGTSTQAK ddPTM_HeLa_A485_30min_R1 2 SASSSWLEGTSTQAK 15 0 K7EL81;Q9BZL4-3;Q9BZL4-5;Q9BZL4-2;Q9BZL4-4;Q9BZL4 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 SAS(0.265)S(0.644)S(0.092)WLEGTSTQAK;SAS(0.182)S(0.409)S(0.409)WLEGTSTQAK ; 380.74 1.96E-119 566650000 729010 664770 555640 813800 866780 652150 1004760 965050 573710 983410 TRUE FALSE FALSE 891175.7594 742509.0688 761194.3581 858255.8333 780480.3398 686295.5656 790084.8179 728369.9744 688848.3346 738263.9853 1.207123437 1.005750089 1.031059856 1.162532442 1.057183278 0.929607267 1.070192822 0.986598275 0.933065067 1 19.49377726 -6.012150383 23.77133265 0.988998424 1.092245198 0.418134481 0.065373949 341.8606983 668827.6089 0.020899617 0.022013562 9.72E-07 6.012150383 0.103246773 SASSASSLFS(ph)PSSTLFSSSR ddPTM_HeLa_A485_30min_R1 2 SASSASSLFSPSSTLFSSSR 20 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SASSASSLFS(1)PSSTLFSSSR;SASSASSLFS(0.999)PS(0.001)STLFSSSR ; 389.59 1.32E-157 1125170000 169290 200880 178620 167870 261420 176100 240060 215300 182450 222220 TRUE FALSE FALSE 206947.9765 224371.1686 244698.971 177040.313 235392.1069 185320.3237 188769.2199 162497.3374 219066.0415 166824.6437 1.240512025 1.344952182 1.466803499 1.061235973 1.411015194 1.110868992 1.131542773 0.974060749 1.313151562 1 17.3479729 -6.287504633 21.89883214 1.105904551 1.302585968 0.361400792 0.132232387 181.0932783 152144.7325 0.044706568 0.039453621 5.16E-07 6.287504633 0.196681416 SASSASSLFS(ph)PSSTLFSSSR ddPTM_HeLa_A486_30min_R1 1 SASSASSLFSPSSTLFSSSR 20 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SASSASSLFS(0.577)PS(0.095)S(0.327)TLFSSSR 476.89 6.21E-262 437650000 286900 286790 225380 94248 300850 259650 286930 273400 224570 265220 TRUE FALSE FALSE 266789.7916 264063.7159 312653.1719 219414.107 263114.5877 227617.0229 215137.0792 211152.7883 244035.9084 198807.1857 1.341952458 1.3282403 1.572645228 1.103652799 1.323466185 1.14491346 1.082139352 1.062098372 1.227500442 1 17.60101038 -5.86762122 1.004799024 1.095146179 1.394623129 0.527898757 0.113569285 0.426248426 0.928260944 0.053325729 0.073268176 1.36E-06 5.86762122 0.299476951 SASSASSLFSPSS(ph)TLFSSSR ddPTM_HeLa_A486_30min_R1 1 SASSASSLFSPSSTLFSSSR 20 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SASSASSLFS(0.25)PS(0.015)S(0.731)T(0.005)LFSSSR 499 8.19E-288 549230000 282800 299180 216560 101720 337570 268810 277290 289400 209110 266710 TRUE FALSE FALSE 262977.1804 275471.8872 300417.8317 236809.3006 295228.8229 235646.9553 207909.1091 223509.9376 227235.8232 199924.08 1.315385222 1.37788248 1.502659568 1.184496138 1.476704671 1.178682204 1.039940307 1.117974071 1.136610573 1 17.60909272 -6.458745406 4.827113476 1.085603796 1.367704125 0.7135457 0.089442049 0.118775464 5.486396285 0.031474705 0.027000586 3.48E-07 6.458745406 0.282100329 SASSEEASES(ph)PTAR ddPTM_HeLa_A486_30min_R1 1 SASSEEASESPTAR 14 0 A0A075B6Q3;Q5H9F3-3 A0A075B6Q3 BCORL1 1 0 SASSEEASES(0.994)PT(0.006)AR 147.39 7.42E-08 129420000 149380 144930 150590 48782 232150 126370 146350 162920 136810 129930 TRUE FALSE FALSE 138909.2334 133445.219 208902.4809 113566.9613 203031.5823 110779.7542 109731.6821 125826.6725 148668.801 97394.6823 1.426250696 1.370148922 2.144906436 1.166048891 2.084626979 1.13743124 1.126670158 1.291925489 1.526457066 1 16.57155538 -6.318400914 24.99954563 1.22912777 1.625393778 0.315846435 0.309894876 365.5895428 160450.488 0.104616387 0.092263007 4.80E-07 6.318400914 0.396266008 SASSGAEGDVSS(ph)EREP ddPTM_HeLa_A485_30min_R1 1 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 0 SASSGAEGDVS(0.006)S(0.994)EREP 189.59 7.54E-17 204750000 246640 303040 276890 264810 363850 294240 334240 369830 268960 346760 TRUE FALSE FALSE 301504.2171 338477.8919 379323.1334 279275.8998 327623.8164 309645.9514 262826.8935 279128.6126 322937.805 260319.1136 1.158210063 1.30024218 1.457146684 1.072821338 1.258546911 1.189486039 1.009633483 1.072255543 1.240545884 1 17.98992172 -6.104227846 1.086790185 1.08925299 1.282291854 0.317988074 0.112635796 0.611655291 1.525960359 0.057326479 0.060265207 7.87E-07 6.104227846 0.193038864 SASSGAEGDVSS(ph)EREP ddPTM_HeLa_A486_30min_R1 2 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 0 SASSGAEGDVS(0.01)S(0.99)EREP;SASSGAEGDVS(0.014)S(0.986)EREP ; 191.44 9.80E-17 294310000 810330 884810 732040 326560 1027060 799230 949690 950710 742290 837100 TRUE FALSE FALSE 753530.0515 814694.4332 1015505.493 760248.1834 898236.5578 700629.1286 712067.5172 734254.0869 806632.2949 627484.7114 1.200873962 1.298349455 1.618374877 1.211580409 1.431487559 1.116567648 1.1347966 1.170154545 1.285501113 1 19.25922078 -6.268458917 24.70825402 1.151625671 1.356127975 0.40009422 0.128669058 515.8104933 1815609.561 0.044520982 0.040113262 5.39E-07 6.268458917 0.204502304 SAST(ph)LCLPSVGAARPQVK ddPTM_HeLa_A486_30min_R1 1 SASTLCLPSVGAARPQVK 18 1 Q8IUC4-2;A8MT19;Q8IUC4 Q8IUC4-2 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 0 SAS(0.391)T(0.609)LCLPSVGAARPQVK 276.68 4.97E-69 894760000 369610 462260 360440 211420 596620 487410 552530 590300 408140 459050 TRUE FALSE FALSE 343702.2477 425628.8341 500012.0209 492196.4446 521786.3563 427278.3098 414281.1499 455901.5762 443517.9038 344100.8921 0.99884149 1.236930342 1.453097136 1.430384099 1.516376064 1.241723924 1.20395256 1.324906696 1.288918204 1 18.39247211 -6.485619436 24.97557521 1.23027956 1.339269954 0.11194473 0.156558135 1465.092699 982079.2859 0.058154148 0.051272802 3.27E-07 6.485619436 0.108990394 SASVVSSDSISTSADNFS(ph)PDLR ddPTM_HeLa_A485_30min_R1 3 SASVVSSDSISTSADNFSPDLR 22 0 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 SASVVSSDSISTSADNFS(1)PDLR;SASVVSSDSISTSADNFS(1)PDLR;SASVVSSDSISTSADNFS(1)PDLR ;; 566.28 0 1138550000 416480 531133 545098 456445 715715 492479 632926 702429 538124 585862 TRUE FALSE FALSE 509124.5392 593244.3841 746752.4336 481379.4346 644455.9016 518264.4389 497696.1896 530157.1864 646120.5508 439817.3854 1.15758166 1.348842506 1.697869294 1.094498423 1.465280644 1.178362785 1.131597354 1.205402979 1.469065508 1 18.74654511 -6.282459533 24.43872397 1.205642875 1.357412664 0.145332313 0.188303873 1302.777396 1514645.945 0.065566622 0.057886584 5.22E-07 6.282459533 0.151769789 SASVVSSDSISTSADNFS(ph)PDLR ddPTM_HeLa_A486_30min_R1 5 SASVVSSDSISTSADNFSPDLR 22 0 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 SASVVSSDSISTSADNFS(1)PDLR;SASVVSSDSISTSADNFS(1)PDLR;SASVVSSDSISTSADNFS(1)PDLR;SASVVSSDSISTSADNFS(1)PDLR;SASVVSSDSISTSADNFS(1)PDLR ;;;; 377.17 7.68E-143 2158930000 1194591 1357228 1162134 445675 1707355 1107030 1360231 1377394 998926 1159276 TRUE FALSE FALSE 1110856.34 1249676.31 1612143.408 1037553.923 1493202.615 970455.8941 1019886.817 1063791.454 1085513.71 868985.744 1.278336667 1.438086089 1.855201215 1.193982675 1.718328092 1.116768486 1.173651954 1.224175957 1.249173209 1 19.72897298 -6.281569041 24.79096748 1.168071018 1.496615243 0.449439464 0.190009079 719.2812944 885838.0766 0.064742689 0.057169973 5.23E-07 6.281569041 0.328544225 SAT(ph)FPNAGPR ddPTM_HeLa_A485_30min_R1 4 SATFPNAGPR 10 0 Q86X27;Q86X27-3 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 S(0.001)AT(0.999)FPNAGPR;S(0.002)AT(0.998)FPNAGPR;S(0.008)AT(0.992)FPNAGPR;S(0.001)AT(0.999)FPNAGPR ;;; 174.57 6.36E-07 712810000 860990 877100 723620 1631220 1373100 893650 1559990 1578420 792110 2199480 TRUE FALSE FALSE 1052514.255 979669.2152 991317.1503 1720329.418 1236389.343 940440.1322 1226685.393 1191310.02 951079.2113 1651190.114 0.637427663 0.593310974 0.600365241 1.041872407 0.748786788 0.569552908 0.742909845 0.721485679 0.575996188 1 20.65507481 -11.12022367 2.392733929 1.586799777 0.697453144 0.321901631 0.133749253 15690736.03 4510953.363 50001036.67 0.035651095 7.58E-12 11.12022367 -0.889346633 SAT(ph)FPNAGPR ddPTM_HeLa_A486_30min_R1 2 SATFPNAGPR 10 0 Q86X27;Q86X27-3 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 S(0.008)AT(0.992)FPNAGPR;SAT(1)FPNAGPR ; 185.99 5.12E-09 550050000 154631 206770 175114 90345 277290 231550 249860 266390 166337 206224 TRUE FALSE FALSE 143792.1654 190384.7922 242922.8305 210327.7258 242509.7026 202983.7152 187342.3853 205738.8123 180755.2251 154584.1681 0.930186882 1.231593083 1.571459959 1.360603278 1.568787448 1.31309511 1.211911851 1.330917744 1.169299724 1 17.23803305 -8.093014173 1.079697778 0.999134274 1.337064127 0.24015543 0.173743762 0.934011451 2.377009514 0.174143166 0.056186022 8.07E-09 8.093014173 0.337929853 SAT(ph)REPPYRVPR ddPTM_HeLa_A486_30min_R1 2 SATREPPYRVPR 12 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.013)AT(0.987)REPPYRVPR;S(0.01)AT(0.99)REPPYRVPR ; 169.04 1.64E-10 326340000 61251 77975 91584 21609 113718 64412 70177 83043 60827 57078 TRUE FALSE FALSE 56957.6212 71795.97702 127047.7775 50306.84406 99454.42806 56465.50233 52617.97234 64135.92172 66099.53334 42785.29728 1.331242852 1.678052546 2.969426078 1.175797464 2.324500106 1.319740797 1.229814345 1.499017789 1.54491233 1 15.38482749 -6.293516248 23.98886644 1.344330297 1.90335187 0.255347844 0.491703913 608.2050863 454847.1955 0.170294931 0.150201759 5.09E-07 6.293516248 0.559021572 SATDGNTS(ph)TTPPT(ph)SAK ddPTM_HeLa_A486_30min_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 2 0 SATDGNT(0.007)S(0.599)T(0.227)T(0.166)PPT(0.723)S(0.277)AK 165.45 1.52E-11 298030000 557060 527410 280990 340840 450180 616680 866010 762340 448500 971690 TRUE FALSE FALSE 518012.9707 485616.1108 389796.8532 793492.7451 393714.2266 540600.2915 649325.1383 588771.8238 487376.3411 728372.4994 0.711192379 0.666713956 0.535161409 1.089405141 0.540539665 0.742203051 0.89147399 0.808338898 0.669130619 1 19.47431693 -13.99999999 0.121976346 1.811216155 0.624633386 0.20949559 0.154972021 245.6994279 1.929836584 49.49063335 1.408529099 1.00E-14 13.99999999 -1.186582769 SATDGNTS(ph)TTPPTS(ph)AK ddPTM_HeLa_A486_30min_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 2 0 SATDGNT(0.01)S(0.361)T(0.27)T(0.36)PPT(0.199)S(0.8)AK 142.39 1.93E-07 281970000 343060 314070 153390 194250 300290 361570 495330 462650 238320 548190 TRUE FALSE FALSE 319013.2656 289181.9494 212786.7159 452223.8169 262624.8281 316963.1696 371393.1949 357314.6946 258977.7695 410919.6559 0.776339756 0.703743287 0.517830464 1.100516391 0.639114786 0.771350713 0.903809758 0.869548802 0.630239429 1 18.64849682 -14 0.130100309 1.703113802 0.68341393 0.154542729 0.156617135 277.6427648 2.274906766 51.82144096 1.177375505 1.00E-14 14 -1.019699872 SATDGNTS(ph)TTPPTSAK ddPTM_HeLa_A485_30min_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 SATDGNT(0.011)S(0.446)T(0.19)T(0.351)PPT(0.002)S(0.001)AK 171.81 2.98E-12 721880000 571940 587480 463000 717840 799670 682980 917310 937510 567890 991390 TRUE FALSE FALSE 699166.0798 656180.6756 634282.967 757053.7815 720052.047 718739.7767 721319.2248 707584.2025 681860.314 744254.7182 0.939417733 0.881661425 0.852239094 1.017197154 0.967480661 0.965717461 0.969183274 0.950728541 0.916165255 1 19.50543694 -5.255933558 24.95937938 0.967188624 0.890161619 0.553097533 0.032240543 342.1341032 1550982.131 0.008953034 0.014955579 5.55E-06 5.255933558 -0.077027005 SATDGNTS(ph)TTPPTSAK ddPTM_HeLa_A486_30min_R1 2 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 SATDGNT(0.119)S(0.465)T(0.262)T(0.15)PPT(0.003)S(0.001)AK;SATDGNT(0.018)S(0.576)T(0.299)T(0.088)PPT(0.016)S(0.003)AK ; 163.71 7.80E-12 720770000 1582140 1646300 908400 649675 1568840 1688680 1916010 1941450 1259650 1982150 TRUE FALSE FALSE 1471240.156 1515841.192 1260156.808 1512476.233 1372061.458 1480347.831 1436604.033 1499424.217 1368837.476 1485806.738 0.99019618 1.02021424 0.84812969 1.017949504 0.923445441 0.996325964 0.966884855 1.00916504 0.921275588 1 20.50281504 SATDGNTSTT(ph)PPT(ph)SAK ddPTM_HeLa_A486_30min_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 2 0 SATDGNT(0.08)S(0.242)T(0.302)T(0.377)PPT(0.554)S(0.446)AK 101.39 2.05E-05 0 297150 285680 133480 131680 272720 307260 389240 388590 221960 440240 TRUE FALSE FALSE 276321.3195 263041.6764 185167.0307 306557.6947 238512.9146 269353.3852 291848.035 300116.5399 241199.6715 330001.0385 0.837334697 0.797093481 0.561110448 0.928959788 0.722764133 0.816219811 0.884385202 0.909441198 0.730905795 1 18.33211104 -6.559326328 4.188521346 0.872769216 0.768017099 0.193087096 0.106914361 0.384573826 15.02760219 0.040864393 0.031956919 2.76E-07 6.559326328 -0.104752117 SATDGNTSTT(ph)PPTS(ph)AK ddPTM_HeLa_A485_30min_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 2 0 SATDGNT(0.002)S(0.025)T(0.066)T(0.905)PPT(0.207)S(0.795)AK 159.81 7.93E-09 0 297980 266560 195500 451160 372780 279290 476780 488780 237270 621140 TRUE FALSE FALSE 364264.623 297731.8732 267823.5854 475805.7284 335664.7143 293913.1925 374912.0581 368905.9386 284887.9126 466301.2292 0.781178775 0.638496865 0.574357451 1.020382745 0.719845227 0.630307565 0.804012588 0.791132246 0.610952523 1 18.83090271 -10.02761913 4.116415677 1.000025548 0.73207449 0.299887761 0.123694712 166690296.7 273175536.5 58327.78653 0.030962995 9.38E-11 10.02761913 -0.267951058 SATDGNTSTT(ph)PPTSAK ddPTM_HeLa_A485_30min_R1 5 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 SAT(0.001)DGNT(0.032)S(0.056)T(0.056)T(0.852)PPT(0.002)S(0.001)AK;SATDGNT(0.011)S(0.31)T(0.108)T(0.571)PPTSAK;SATDGNT(0.002)S(0.111)T(0.134)T(0.752)PPTSAK;SATDGNT(0.035)S(0.06)T(0.06)T(0.844)PPTSAK;SATDGNT(0.229)S(0.138)T(0.085)T(0.547)PPT(0.001)SAK ;;;; 184.31 4.67E-17 2963500000 2799600 2860330 2220200 3521280 3809060 3175130 4739600 4825890 2773360 4911700 TRUE FALSE FALSE 3422361.361 3194820.712 3041544.37 3713638.61 3429816.612 3341374.897 3726945.741 3642332.911 3329947.913 3687303.583 0.928147435 0.866438209 0.824869529 1.007142083 0.930169305 0.906183834 1.010750988 0.987803914 0.903084826 1 21.81413477 -5.262117172 24.99978718 0.961263037 0.872480373 0.467161829 0.04421118 55.64412436 2052419.045 0.012386466 0.019676395 5.47E-06 5.262117172 -0.088782664 SATDGNTSTT(ph)PPTSAK ddPTM_HeLa_A486_30min_R1 4 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 0 SATDGNT(0.001)S(0.05)T(0.194)T(0.755)PPT(0.001)SAK;SATDGNT(0.016)S(0.183)T(0.064)T(0.737)PPT(0.001)SAK;SATDGNT(0.012)S(0.075)T(0.029)T(0.85)PPT(0.029)S(0.005)AK;SATDGNT(0.022)S(0.161)T(0.287)T(0.53)PPTSAK ;;; 238.05 1.06E-40 2656610000 2238020 2330410 1353600 1003596 2370020 2541070 3003540 2954170 1905380 3097430 TRUE FALSE FALSE 2081146.355 2145739.824 1877750.171 2336422.207 2072749.992 2227578.619 2252022.524 2281569.98 2070539.873 2321813.367 0.896345238 0.924165506 0.808742941 1.006291996 0.892728943 0.959413298 0.969941235 0.98266726 0.891777049 1 21.14682058 -5.271582247 24.99995725 0.954717084 0.881192653 0.396193839 0.045688912 719.9582675 1774538.78 0.012354199 0.018558457 5.35E-06 5.271582247 -0.073524432 SATPEPVTDNRDVEDMELS(ph)DVEDDGSK ddPTM_HeLa_A486_30min_R1 1 SATPEPVTDNRDVEDMELSDVEDDGSK 27 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 SATPEPVTDNRDVEDMELS(1)DVEDDGSK 193.44 4.40E-21 244450000 74396 96434 54626 65035 91061 111030 144260 127340 87384 176440 TRUE FALSE FALSE 69181.22458 88792.21863 75778.65014 151404.7667 79639.28027 97332.24747 108164.6222 98347.46181 94958.51548 132258.2756 0.523076717 0.671354728 0.572959611 1.144765921 0.602149695 0.735925575 0.817828765 0.743601573 0.717977874 1 17.01299847 -9.028796827 0.043999357 1.730746331 4.39E-26 0.249290712 0.158583546 271.0913634 3.605139021 81.99629011 59.44640719 9.36E-10 9.028796827 -1.730746331 SATRPS(ph)PS(ph)PER ddPTM_HeLa_A485_30min_R1 5 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SAT(0.025)RPS(0.975)PS(1)PER;S(0.042)AT(0.145)RPS(0.845)PS(0.969)PER;S(0.001)AT(0.03)RPS(0.969)PS(1)PER;S(0.009)AT(0.01)RPS(0.982)PS(0.999)PER;S(0.087)AT(0.111)RPS(0.807)PS(0.995)PER ;;;; 129.04 0.00019638 32351790000 1773610 2172370 1963570 2264820 2833410 2113390 2975250 2886810 1927040 2878570 TRUE FALSE FALSE 2168143.426 2426409.774 2689976.254 2388541.382 2551305.752 2224043.832 2339563.532 2178815.321 2313779.252 2160995.475 1.003307712 1.122820386 1.244785695 1.105296799 1.180615962 1.029175608 1.082632314 1.008246128 1.070700646 1 21.04326462 -6.274151731 24.63760808 1.041446402 1.135743475 0.36175546 0.061692554 734.9302445 1424351.328 0.021940098 0.019473184 5.32E-07 6.274151731 0.094297073 SATRPS(ph)PS(ph)PER ddPTM_HeLa_A486_30min_R1 5 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.001)AT(0.001)RPS(0.998)PS(1)PER;SAT(0.002)RPS(0.998)PS(1)PER;S(0.001)AT(0.052)RPS(0.948)PS(1)PER;S(0.001)AT(0.005)RPS(0.994)PS(1)PER;S(0.008)AT(0.01)RPS(0.982)PS(1)PER ;;;; 145.92 3.70E-06 33467335000 2622400 2882250 2009820 1056718 2966560 2740600 3353470 3262140 2322100 3199430 TRUE FALSE FALSE 2438583.302 2653850.013 2788076.129 2460092.908 2594466.383 2402492.636 2514396.337 2519421.934 2523381.498 2398271.903 1.016808519 1.106567612 1.162535459 1.025777313 1.081806604 1.001759906 1.048420045 1.050515553 1.05216656 1 21.1935638 -5.316439733 24.99998934 1.040159987 1.096430706 0.30293671 0.040200269 366.0559227 166387.1783 0.011237715 0.016668239 4.83E-06 5.316439733 0.056270719 SATRPS(ph)PS(ph)PERS(ph)STGPEPPAPTPLLAER ddPTM_HeLa_A485_30min_R1 3 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.132)AT(0.141)RPS(0.747)PS(0.914)PERS(0.39)S(0.354)T(0.321)GPEPPAPTPLLAER;S(0.007)AT(0.037)RPS(0.957)PS(0.999)PERS(0.787)S(0.165)T(0.049)GPEPPAPTPLLAER;S(0.118)AT(0.135)RPS(0.748)PS(0.997)PERS(0.382)S(0.332)T(0.288)GPEPPAPTPLLAER ;; 149.72 3.18E-09 1640650000 218598 275790 201349 253961 343348 269893 359588 370759 225976 383071 TRUE FALSE FALSE 267224.3709 308041.2414 275836.3739 267834.2464 309163.0676 284024.1801 282759.0862 279829.7739 271327.3104 287578.4496 0.929222518 1.071155512 0.959169139 0.931343245 1.075056451 0.987640696 0.98324157 0.973055437 0.943489718 1 18.13359604 -9.901981653 4.710900856 1.000000091 0.986493674 0.006959715 0.049113131 63403761.88 19.88132909 62.40132867 0.011570671 1.25E-10 9.901981653 -0.013506417 SATRPS(ph)PS(ph)PERS(ph)STGPEPPAPTPLLAER ddPTM_HeLa_A486_30min_R1 2 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.001)AT(0.001)RPS(0.992)PS(0.897)PERS(0.5)S(0.451)T(0.158)GPEPPAPTPLLAER;S(0.049)AT(0.055)RPS(0.898)PS(0.997)PERS(0.377)S(0.332)T(0.293)GPEPPAPTPLLAER ; 94.503 0.0019918 1451080000 640764 574200 362940 236432 667982 593393 795504 777166 409681 761824 TRUE FALSE FALSE 595849.7525 528698.3008 503480.0879 550425.6446 584197.4689 520186.2048 596460.4852 600222.2672 445192.4789 571058.3118 1.043413151 0.925821917 0.88166143 0.963869422 1.023008433 0.910916091 1.044482626 1.051070013 0.779591978 1 19.12327854 -4.247556938 23.36582746 0.956758556 1.043413299 0.102490461 0.079363581 2415.129622 4064781.118 0.019376061 0.355717452 5.66E-05 4.247556938 0.086654743 SATRPS(ph)PS(ph)PERSST(ph)GPEPPAPTPLLAER ddPTM_HeLa_A485_30min_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.002)AT(0.009)RPS(0.99)PS(0.988)PERS(0.117)S(0.418)T(0.478)GPEPPAPTPLLAER 119.39 0.00012499 140740000 26132 33474 33392 37200 45040 33134 37776 45985 26408 44640 TRUE FALSE FALSE 31944.97325 37388.49311 45745.09036 39232.1418 40555.65945 34868.84501 29704.849 34707.10665 31707.84337 33512.06954 0.953237854 1.115672462 1.365033285 1.17068693 1.210180691 1.040486174 0.886392557 1.035659902 0.9461619 1 15.03239316 -6.438904121 4.359782094 0.968815101 1.17093851 0.454405508 0.101410987 0.216299511 7.397641626 0.03913552 0.033618523 3.64E-07 6.438904121 0.202123409 SATRPS(ph)PS(ph)PERSST(ph)GPEPPAPTPLLAER ddPTM_HeLa_A486_30min_R1 2 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 SATRPS(0.99)PS(0.781)PERS(0.271)S(0.454)T(0.504)GPEPPAPTPLLAER;S(0.009)AT(0.01)RPS(0.982)PS(0.999)PERS(0.128)S(0.406)T(0.466)GPEPPAPTPLLAER ; 146.12 6.03E-09 1278090000 248077 280914 212778 121459 331637 296211 332319 301304 241049 324742 TRUE FALSE FALSE 230688.0834 258653.3516 295171.34 282762.6902 290039.9951 259667.4985 249169.2713 232703.6566 261943.3214 243424.4895 0.947678206 1.062560929 1.212578655 1.1616033 1.191498833 1.066727095 1.023599852 0.955958281 1.076076289 1 17.89311479 -6.598066974 3.57831779 1.010377475 1.120991826 0.283828875 0.07503003 0.313907244 8.034888456 0.03247667 0.024765914 2.52E-07 6.598066974 0.11061435 SATRPS(ph)PS(ph)PERSSTGPEPPAPTPLLAER ddPTM_HeLa_A485_30min_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.006)AT(0.007)RPS(0.937)PS(0.887)PERS(0.057)S(0.055)T(0.05)GPEPPAPTPLLAER 112.72 0.00015628 252080000 11350 32235 29569 22303 85823 67140 111750 335300 36096 28012 TRUE FALSE FALSE 13874.76834 36004.60284 40507.80357 23521.35642 77278.16078 70655.34658 87873.69959 253067.1493 43340.13611 21029.12392 0.659788225 1.712130423 1.926271571 1.118513377 3.674815987 3.359880651 4.178666687 12.03412706 2.060957759 1 14.36010113 -6.288640177 1.394059519 5.631284706 1.438757475 0.195522858 2.836357103 0.548039028 2.145492867 1.30174368 1.150063543 5.14E-07 6.288640177 -4.192527231 SATRPSPS(ph)PER ddPTM_HeLa_A485_30min_R1 9 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SATRPSPS(1)PER;SATRPS(0.002)PS(0.998)PER;SAT(0.002)RPS(0.008)PS(0.99)PER;S(0.002)AT(0.036)RPS(0.11)PS(0.852)PER;SATRPS(0.009)PS(0.991)PER;SATRPS(0.017)PS(0.983)PER;SATRPS(0.005)PS(0.995)PER;SATRPS(0.007)PS(0.993)PER;SATRPS(0.001)PS(0.999)PER ;;;;;;;; 141.85 5.53E-07 7397004000 1153192 1532795 1520055 1202371 1815459 1420910 1722706 1888360 1330573 1638701 TRUE FALSE FALSE 1409715.582 1712042.042 2082386.599 1268053.483 1634705.527 1495306.65 1354635.79 1425236.749 1597606.796 1230202.999 1.145921107 1.391674418 1.69271787 1.030767674 1.328809578 1.215495859 1.101148177 1.15853786 1.298652985 1 20.23046497 -5.285567828 24.9992843 1.17517617 1.408261575 0.340818743 0.157412208 897.1688876 929547.1232 0.044115124 0.06547127 5.18E-06 5.285567828 0.233085405 SATRPSPS(ph)PER ddPTM_HeLa_A486_30min_R1 4 SATRPSPSPER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SATRPS(0.034)PS(0.966)PER;SATRPS(0.022)PS(0.978)PER;SAT(0.002)RPS(0.173)PS(0.825)PER;S(0.005)AT(0.031)RPS(0.283)PS(0.681)PER ;;; 104.95 0.00036655 5990510000 2510380 2619010 2162760 907878 2878370 2345520 2821330 2881390 2210760 2718650 TRUE FALSE FALSE 2334415.326 2411470.109 3000238.593 2113585.866 2517337.995 2056153.59 2115403.393 2225360.397 2402390.457 2037882.345 1.145510354 1.183321557 1.472233469 1.037148131 1.235271507 1.0089658 1.038040002 1.091996505 1.178866122 1 20.95863933 -5.326114669 24.99997639 1.089380687 1.258656969 0.381072383 0.106400611 217.8930649 84225.06673 0.029846874 0.044270074 4.72E-06 5.326114669 0.169276282 SATTT(ph)GSPGTEK ddPTM_HeLa_A485_30min_R1 1 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 SATT(0.008)T(0.779)GS(0.213)PGTEK 315.41 6.00E-60 353510000 478800 466330 283570 658770 580260 515460 734810 778670 400210 859460 TRUE FALSE FALSE 585307.4082 520863.237 388474.3433 694756.937 522487.277 542448.6885 577811.8407 587699.9616 480528.4761 645212.4392 0.907154563 0.807274016 0.602087498 1.076787884 0.809791078 0.840728814 0.895537354 0.910862727 0.744760093 1 19.29941473 -11.79204795 2.031970653 7.308946679 0.844941813 0.138637663 0.116711314 3010157.194 143477.4107 88039202.93 0.030004573 1.61E-12 11.79204795 -6.464004866 SATTT(ph)GSPGTEK ddPTM_HeLa_A486_30min_R1 1 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 SATT(0.004)T(0.883)GS(0.113)PGTEK 322.75 2.01E-60 788570000 1484900 1203600 665850 562940 1164800 1487500 1712300 1486300 1036200 1883500 TRUE FALSE FALSE 1380816.178 1108222.353 923684.9521 1310552.769 1018699.923 1303987.374 1283864.429 1147901.936 1126018.65 1411859.34 0.978012567 0.784938216 0.654232986 0.928245989 0.721530746 0.923595812 0.909343015 0.813042704 0.797543082 1 20.42916493 -6.28651928 24.92740534 0.878309966 0.809349903 0.115765905 0.101763551 1902.200022 1890627.751 0.035631035 0.031436262 5.17E-07 6.28651928 -0.068960063 SATTT(ph)PSGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 2 0 S(0.009)AT(0.018)T(0.146)T(0.799)PS(0.03)GS(0.998)PR;SATT(0.001)T(0.998)PS(0.001)GS(1)PR ; 240.75 2.13E-21 271839000 457490 647400 612370 500250 807990 598580 695670 766300 561650 697850 TRUE FALSE FALSE 559257.0722 723107.7984 838911.1458 527577.3908 727543.6786 629920.7232 547034.4214 578363.7235 674368.0032 523888.838 1.067510952 1.380269527 1.601315174 1.007040717 1.388736743 1.202393862 1.044180333 1.103981764 1.287234914 1 18.9989012 -6.517680758 8.322949329 1.118088023 1.295843949 0.196374642 0.171123831 0.211504142 143.1835414 0.063083515 0.051590734 3.04E-07 6.517680758 0.177755926 SATTT(ph)PSGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 2 0 S(0.001)AT(0.01)T(0.065)T(0.788)PS(0.138)GS(0.997)PR;SAT(0.016)T(0.17)T(0.793)PS(0.022)GS(0.998)PR ; 98.337 0.0042284 224710000 546310 556590 482590 197106 658250 563450 572980 605040 507450 573510 TRUE FALSE FALSE 508016.4901 512483.7813 669461.7722 458872.7292 575686.1471 493937.2677 429614.3436 467285.5999 551436.1746 429899.3631 1.181710265 1.192101746 1.557252301 1.067395694 1.3391184 1.148960222 0.999337009 1.08696509 1.282709913 1 18.71363945 -6.45328056 5.887450086 1.0959768 1.26726068 0.262259436 0.139918255 0.322535431 20.73657627 0.049532319 0.043089131 3.52E-07 6.45328056 0.17128388 SATTTGS(ph)PGTEK ddPTM_HeLa_A485_30min_R1 4 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 SATTTGS(1)PGTEK;SATT(0.001)T(0.05)GS(0.949)PGTEK;SATTT(0.408)GS(0.592)PGTEK;SATTT(0.001)GS(0.999)PGTEK ;;; 343.27 4.80E-74 2768450000 2987850 2881420 2056760 4087430 3638230 2953310 4567890 4755730 2557660 5124620 TRUE FALSE FALSE 3652486.925 3218377.004 2817641.113 4310715.951 3275995.047 3107940.745 3591922.985 3589379.761 3070958.902 3847146.546 0.949401558 0.836562103 0.732397656 1.120496945 0.851538928 0.807856085 0.933658997 0.932997929 0.798243286 1 21.87535736 -10.14624814 4.713652723 1.000007224 0.885440268 0.102540772 0.102231356 24247619.52 52193570.2 1739.286656 0.024327451 7.14E-11 10.14624814 -0.114566956 SATTTGS(ph)PGTEK ddPTM_HeLa_A486_30min_R1 3 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 SATTT(0.024)GS(0.976)PGTEK;SATTTGS(1)PGTEK;SATTT(0.01)GS(0.99)PGTEK ;; 355.81 4.31E-87 1551680000 2896710 2393880 1415810 1145570 2452860 2768930 3479610 3145230 2137120 3798670 TRUE FALSE FALSE 2693665.588 2204180.23 1964049.549 2666944.854 2145199.427 2427327.569 2608974.774 2429129.789 2322367.282 2847458.307 0.945989475 0.77408692 0.689755332 0.93660541 0.753373428 0.852454121 0.916246875 0.853087044 0.815593077 1 21.44124329 -6.519982142 24.35506214 0.884040656 0.815285346 0.143076187 0.085567117 186.3562347 1566949.903 0.031581596 0.024950964 3.02E-07 6.519982142 -0.068755311 SATTTPSGS(ph)PR ddPTM_HeLa_A485_30min_R1 5 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 SATTTPS(0.001)GS(0.999)PR;SATTTPSGS(1)PR;SATTTPSGS(1)PR;SATTTPSGS(1)PR;SATT(0.001)T(0.001)PS(0.035)GS(0.963)PR ;;;; 187.35 1.17E-10 2737400000 2611676 3012121 3074151 3899568 4506433 3048304 3873857 3865377 3141719 5285344 TRUE FALSE FALSE 3192634.316 3364362.349 4211407.381 4112591.526 4057756.707 3207908.484 3046175.805 2917387.23 3772233.186 3967805.01 0.804634882 0.847915243 1.061394743 1.03649033 1.022670393 0.808484408 0.767723161 0.735264768 0.950710324 1 21.9199097 -6.273198203 24.65008942 0.830595988 0.959173172 0.172388713 0.106477526 950.1954654 1991894.83 0.039259713 0.034906685 5.33E-07 6.273198203 0.128577184 SATTTPSGS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SATTTPSGSPR 11 0 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 SATTTPS(0.001)GS(0.999)PR;SATTTPSGS(1)PR;SATTTPSGS(1)PR ;; 157.99 1.92E-07 1967250000 1185520 1545530 1191350 803379 2003000 1872810 2020440 2117230 1438990 1635850 TRUE FALSE FALSE 1102421.17 1423056.574 1652672.625 1870306.913 1751765.063 1641761.744 1514904.542 1635182.948 1563722.812 1226222.512 0.899038436 1.160520672 1.347775472 1.525258991 1.428586611 1.33887751 1.235423854 1.333512418 1.275235772 1 20.22578937 -4.408801567 2.522940661 1.33201514 0.870250601 0.476084416 0.130774993 0.303215406 2.990620131 0.034102875 0.257905023 3.90E-05 4.408801567 -0.461764539 SAVAVYSYSCEGPEEES(ph)EDDSHLEGR ddPTM_HeLa_A485_30min_R1 1 SAVAVYSYSCEGPEEESEDDSHLEGR 26 0 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;A0A1B0GTI3;A0A1B0GUC3 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 SAVAVYSYSCEGPEEES(0.997)EDDS(0.003)HLEGR 216.69 3.87E-38 238820000 61241 54098 56470 77046 64554 49273 51019 63327 55097 86535 TRUE FALSE FALSE 74863.84917 60424.29051 77360.60291 81254.82789 58126.7771 51852.85809 40118.37386 47795.95396 66154.46252 64963.41706 1.152400113 0.930127959 1.19083334 1.250778231 0.894761694 0.798185509 0.61755332 0.735736452 1.018334095 1 15.9873399 -5.925367634 5.494732306 0.807993591 1.11963382 0.518256929 0.135076061 0.163620221 8.740203221 0.043847495 0.049807079 1.19E-06 5.925367634 0.311640228 SAVAVYSYSCEGPEEES(ph)EDDSHLEGR ddPTM_HeLa_A486_30min_R1 2 SAVAVYSYSCEGPEEESEDDSHLEGR 26 0 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;A0A1B0GTI3;A0A1B0GUC3 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 SAVAVYSYSCEGPEEES(0.999)EDDS(0.001)HLEGR;SAVAVYSYSCEGPEEES(1)EDDSHLEGR ; 276.37 6.93E-76 658110000 130766 207941 163577 62019 183708 208858 191831 187528 208399 191539 TRUE FALSE FALSE 121599.9787 191462.9979 226918.3951 144383.3663 160665.6296 183091.2235 143832.8548 144831.9681 226463.1931 143576.3877 0.846935771 1.333527058 1.580471544 1.005620552 1.119025435 1.275218206 1.001786277 1.008745034 1.577301092 1 17.13145898 SAVAVYSYSCEGPEEES(ph)EDDSHLEGRDPDIWHVGFK ddPTM_HeLa_A485_30min_R1 3 SAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFK 36 1 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;A0A1B0GTI3;A0A1B0GUC3 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 SAVAVYSYSCEGPEEES(0.993)EDDS(0.007)HLEGRDPDIWHVGFK;SAVAVYSYSCEGPEEES(0.999)EDDS(0.001)HLEGRDPDIWHVGFK;SAVAVYSYSCEGPEEES(0.999)EDDS(0.001)HLEGRDPDIWHVGFK ;; 310.7 5.77E-111 2006750000 400827 318763 354453 529550 615720 544010 750730 896900 424814 732370 TRUE FALSE FALSE 489989.5833 356039.56 485579.9147 558477.9756 554416.7549 572493.5224 590330.4026 676933.8687 510070.2732 549803.6373 0.891208333 0.647575854 0.883187891 1.015777157 1.008390482 1.041269071 1.073711345 1.231228429 0.927731718 1 19.06855693 -5.166955229 2.532477945 1.056249114 0.767299593 0.588678288 0.092494361 0.180664283 2.255429986 0.026113652 0.052168063 6.81E-06 5.166955229 -0.28894952 SAVAVYSYSCEGPEEES(ph)EDDSHLEGRDPDIWHVGFK ddPTM_HeLa_A486_30min_R1 5 SAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFK 36 1 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;A0A1B0GTI3;A0A1B0GUC3 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 SAVAVYSYSCEGPEEES(0.995)EDDS(0.005)HLEGRDPDIWHVGFK;SAVAVYSYSCEGPEEES(0.999)EDDS(0.001)HLEGRDPDIWHVGFK;SAVAVYSYSCEGPEEES(1)EDDSHLEGRDPDIWHVGFK;SAVAVYSYSCEGPEEES(0.997)EDDS(0.002)HLEGRDPDIWHVGFK;SAVAVYSYSCEGPEEES(0.993)EDDS(0.007)HLEGRDPDIWHVGFK ;;;; 351.08 1.05E-149 2261060000 269956 411369 326457 168909.4 547500 482266 583178 558226 394734 451738 TRUE FALSE FALSE 251033.4785 378770.6223 452869.8932 393229.6194 478827.4448 422768.9242 437260.6962 431130.1258 428949.8609 338619.8645 0.741343036 1.118571773 1.337399074 1.161271563 1.414055981 1.248505976 1.291302555 1.273197975 1.266759295 1 18.36930708 -4.312898452 2.706161439 1.262894204 0.670947268 0.676345731 0.105135421 0.198238501 2.097779508 0.024812232 0.248456667 4.87E-05 4.312898452 -0.591946936 SAVHYDEES(ph)GS(ph)EEETLQYFSTVDPNYR ddPTM_HeLa_A486_30min_R1 1 SAVHYDEESGSEEETLQYFSTVDPNYR 27 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 2 0 S(0.06)AVHY(0.594)DEES(0.673)GS(0.667)EEET(0.006)LQYFSTVDPNYR 71.903 0.0089954 94389000 30927 36404 30026 6503.8 42037 30075 26127 33479 29361 26557 TRUE FALSE FALSE 28759.17701 33519.21446 41652.87132 15141.17508 36764.32748 26364.65228 19589.74826 25856.56254 31906.03512 19906.95434 1.44467991 1.68379421 2.0923779 0.760597268 1.846808248 1.32439407 0.984065564 1.298870842 1.602758241 1 14.28098489 -5.247570198 24.99356201 1.287775868 1.734634974 0.307310794 0.32875618 1054.028512 1899455.208 0.087747086 0.150971441 5.65E-06 5.247570198 0.446859106 SAVLCYS(ph)PSDR ddPTM_HeLa_A485_30min_R1 1 SAVLCYSPSDR 11 0 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 SAVLCYS(0.99)PS(0.01)DR 93.766 0.00093172 0 87286 86380 81259 89069 111090 90079 108930 99917 77560 138340 TRUE FALSE FALSE 106702.4696 96481.38959 111320.0856 93934.61394 100029.4895 94795.39715 85656.21562 75412.19909 93125.58058 103854.384 1.027423836 0.929006421 1.071886244 0.904483859 0.963170602 0.912772225 0.824772266 0.726133999 0.896693784 1 16.66420259 -6.399339315 1.942338542 0.840152973 0.982264791 0.316982306 0.078458333 0.346237919 2.582955481 0.03262772 0.027159222 3.99E-07 6.399339315 0.142111819 SAVRPAS(ph)LNLNR ddPTM_HeLa_A485_30min_R1 4 SAVRPASLNLNR 12 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR ;;; 161.09 1.50E-10 2461370000 824120 933840 804330 728780 1173420 761950 1130710 1190560 806900 1003540 TRUE FALSE FALSE 1007442.651 1043044.465 1101885.138 768591.406 1056590.185 801844.5238 889124.5714 898573.2933 968837.4287 753375.9468 1.33723761 1.384493982 1.462596653 1.02019637 1.402474009 1.06433518 1.180187097 1.192728938 1.285994639 1 19.52301045 -1 0.109926584 0.951583565 2.295879 0.350085304 0.127592887 123.7097409 0.951508626 1.161466288 25.22751958 0.1 1 1.344295435 SAVRPAS(ph)LNLNR ddPTM_HeLa_A486_30min_R1 5 SAVRPASLNLNR 12 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR;SAVRPAS(1)LNLNR ;;;; 158.29 1.07E-08 2889820000 1109697 1012493 787327 367206 1055217 971761 1162306 1202070 844885 1031207 TRUE FALSE FALSE 1031912.971 932259.3672 1092201.1 854874.1256 922861.8444 851875.008 871484.7452 928384.902 918120.3121 772986.0552 1.334969711 1.206049399 1.412963523 1.105937319 1.19389197 1.102057407 1.127426219 1.201037064 1.187757924 1 19.56008286 -1 0.118921242 0.97839731 2.056853881 0.498624802 0.079439513 86.7248181 0.711687278 0.574617531 15.47772817 0.1 1 1.078456571 SAVS(ph)PDLHITPIYEGR ddPTM_HeLa_A485_30min_R1 2 SAVSPDLHITPIYEGR 16 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 S(0.017)AVS(0.983)PDLHITPIYEGR;S(0.004)AVS(0.996)PDLHITPIYEGR ; 199.01 3.12E-25 226270000 237959 337550 273972 205127 341340 292340 337490 322770 265560 412060 TRUE FALSE FALSE 290892.1586 377023.5362 375325.6437 216332.5686 307354.9911 307646.4704 265382.5045 243610.1514 318855.4561 309341.0254 0.94036075 1.21879578 1.213307039 0.699333586 0.99357979 0.994522049 0.857896246 0.787513234 1.030757093 1 18.23883865 -5.239830743 24.9870626 0.905179871 1.133618659 0.392174664 0.12246019 777.5667582 899135.1042 0.032588077 0.056380345 5.76E-06 5.239830743 0.228438788 SAVS(ph)PDLHITPIYEGR ddPTM_HeLa_A486_30min_R1 2 SAVSPDLHITPIYEGR 16 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 S(0.022)AVS(0.978)PDLHITPIYEGR;S(0.026)AVS(0.974)PDLHITPIYEGR ; 153.36 2.54E-08 234183000 321840 308250 286920 28554 398000 270995 270108 273372 295196 260304 TRUE FALSE FALSE 299280.678 283823.1474 398023.108 66475.15504 348079.1288 237562.3922 202524.1215 211131.1633 320783.827 195122.1841 1.533811644 1.454591894 2.039865994 0.340684763 1.783903406 1.217505807 1.037934884 1.08204592 1.644015151 1 17.57401829 -5.1860065 25 1.184930813 1.653938681 0.264033306 0.394062085 188.901466 62604.54428 0.102132744 0.176899154 6.52E-06 5.1860065 0.469007868 SAYADDNQITVVEKEDTQK ddPTM_HeLa_A486_30min_R1 1 SAYADDNQITVVEKEDTQK 19 1 Q5CZC0-2;Q5CZC0 Q5CZC0-2 FSIP2 Fibrous sheath-interacting protein 2 0 0 50.787 0.036161 9595600 1485.9 3053.7 6269.1 1007.3 5222.4 2654 2409.3 2725.7 2831 2616.5 FALSE FALSE TRUE 1381.746083 2811.713691 8696.663412 2345.045306 4567.357895 2326.576464 1806.467657 2105.117612 3076.393359 1961.311369 0.704501134 1.433588636 4.434106459 1.195651717 2.328726568 1.186235138 0.921050928 1.073321475 1.568538993 1 10.93760287 -6.275200961 20.93910341 1.140112401 2.075170326 0.173120642 0.946073035 167.1144702 254271.4994 0.339726229 0.302125183 5.31E-07 6.275200961 0.935057925 SAYQEYDS(ph)DSDVPEELKR ddPTM_HeLa_A485_30min_R1 1 SAYQEYDSDSDVPEELKR 18 1 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 0 SAYQEYDS(0.998)DS(0.002)DVPEELKR 125.62 7.09E-06 1542300000 401050 370100 284030 600090 422900 434670 529090 456770 302030 825560 TRUE FALSE FALSE 490262.1889 413379.9756 389104.5165 632871.3972 380794.5911 457428.6491 416045.5992 344746.4413 362644.6506 619763.0853 0.791047741 0.666996769 0.627827836 1.021150521 0.614419607 0.738070175 0.671297806 0.556255204 0.585134319 1 19.2413573 SAYQEYDS(ph)DSDVPEELKR ddPTM_HeLa_A486_30min_R1 3 SAYQEYDSDSDVPEELKR 18 1 Q96JG6;H0Y7Q2;Q96JG6-3 Q96JG6 CCDC132 Coiled-coil domain-containing protein 132 1 0 SAYQEYDS(1)DSDVPEELKR;SAYQEYDS(0.996)DS(0.004)DVPEELKR;SAYQEYDS(0.969)DS(0.031)DVPEELKR ;; 162.81 3.03E-12 4842100000 1950050 1704150 881190 747730 1296980 1914840 2076980 1913530 1418830 2800540 TRUE FALSE FALSE 1813361.565 1569106.948 1222410.367 1740753.228 1134300.675 1678606.509 1557297.636 1477860.991 1541815.327 2099266.556 0.8638072 0.74745484 0.58230355 0.829219721 0.540331894 0.799615706 0.741829394 0.703989204 0.73445429 1 21.00145393 -8.07649011 17.38350866 1 0.722026617 0.422709105 0.095661781 785.1625373 178442.0082 0.088037695 0.022731211 8.39E-09 8.07649011 -0.277973383 SCAS(ph)SYQR ddPTM_HeLa_A485_30min_R1 1 SCASSYQR 8 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40;Q8TF40-2 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 S(0.002)CAS(0.533)S(0.464)YQR 91.867 0.0036388 83093000 128330 156160 132380 141950 183040 156010 172690 193950 140950 173140 TRUE FALSE FALSE 156876.5658 174421.5536 181352.8708 149704.3691 164815.8949 164178.4424 135793.3708 146383.4584 169237.3721 129979.3844 1.206934211 1.341917062 1.395243343 1.151754717 1.26801566 1.263111401 1.044730065 1.126205198 1.302032418 1 16.98792329 -6.246918694 0.907097023 1.127720103 1.302509775 0.323280386 0.100148685 0.722876726 1.277623798 0.06170727 0.05785674 5.66E-07 6.246918694 0.174789672 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 3 0 S(0.005)CDEPLT(0.994)PPPHS(0.641)PT(0.181)S(0.181)MLQLIHDPVS(0.998)PR;S(0.003)CDEPLT(0.996)PPPHS(0.652)PT(0.175)S(0.175)MLQLIHDPVS(1)PR ; 75.068 0.0032809 195438000 54399 81357 80235 45595 95682 69448 73996 80970 64704 64878 TRUE FALSE FALSE 66499.86988 90870.99344 109917.2654 48085.7394 86155.56412 73084.18989 58186.15011 61111.98054 77689.4993 48705.10859 1.365357183 1.865738442 2.2567913 0.987283281 1.768922534 1.500544645 1.194662157 1.25473451 1.595099601 1 15.57178548 -6.808621752 0.270449074 0.996399463 1.878030676 0.241962524 0.333564637 3.116772896 0.685276366 0.644948828 1.004853489 1.55E-07 6.808621752 0.881631213 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 3 0 S(0.001)CDEPLT(0.91)PPPHS(0.381)PT(0.386)S(0.322)MLQLIHDPVS(1)PR;S(0.004)CDEPLT(0.994)PPPHS(0.648)PT(0.177)S(0.177)MLQLIHDPVS(0.999)PR ; 75.068 0.0039133 142276000 91630 116007 105135 26739.5 133652 94770 112882 100894 93152 96951 TRUE FALSE FALSE 85207.21018 106814.1828 145846.0876 62250.90734 116888.1199 83078.24095 84637.72966 77922.6387 101226.4904 72673.83855 1.17246057 1.469774887 2.006858183 0.856579322 1.608393367 1.14316572 1.164624455 1.072224066 1.392887625 1 16.14914849 -5.974535911 1.076209152 1.156531137 1.476571704 0.148424975 0.295964406 0.959465548 2.371621291 0.13975006 0.167812866 1.06E-06 5.974535911 0.320040567 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVSPR ddPTM_HeLa_A486_30min_R1 1 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 0 S(0.006)CDEPLT(0.99)PPPHS(0.363)PT(0.334)S(0.307)MLQLIHDPVSPR 63.776 0.027444 52941000 20131 23454 19379 4829.5 23342 21325 17954 20287 20486 19897 TRUE FALSE FALSE 18719.92086 21595.41962 26883.06779 11243.32007 20414.2287 18694.13832 13461.7193 15668.09296 22261.74297 14914.66169 1.255135466 1.447932247 1.802459107 0.753843453 1.368735619 1.253406795 0.902582947 1.050516149 1.492607974 1 13.86444363 -5.255089404 24.99566241 1.126680013 1.49645124 0.350517616 0.239553247 602.5542767 2371852.815 0.064953644 0.109105025 5.56E-06 5.255089404 0.369771227 SCDEPLTPPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 0 SCDEPLT(0.02)PPPHS(0.898)PT(0.039)S(0.043)MLQLIHDPVS(1)PR 86.081 0.0041744 50340000 20397 34192 32728 23705 42263 28042 38669 40182 29588 29833 TRUE FALSE FALSE 24934.24228 38190.45697 44835.44913 24999.94413 38055.14733 29510.23576 30407.05225 30327.3015 35526.0402 22396.18214 1.113325572 1.705221753 2.001923759 1.11625919 1.699180114 1.317645819 1.357689095 1.354128186 1.586254299 1 14.4509652 -12.23084709 0.217928213 7.48E-11 1.555904338 0.212858349 0.267153071 96.63305812 1.927691293 44.53688168 0.546448587 5.88E-13 12.23084709 1.555904338 SCDEPLTPPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 0 SCDEPLT(0.001)PPPHS(0.837)PT(0.074)S(0.088)MLQLIHDPVS(1)PR;SCDEPLTPPPHS(0.742)PT(0.121)S(0.137)MLQLIHDPVS(1)PR ; 129.5 3.16E-06 118272000 139223 156570 142906 31904 183420 130811 155129 159839 138937 111794 TRUE FALSE FALSE 129464.1866 144162.823 198243.0304 74274.12434 160413.7533 114672.8688 116314.0834 123447.149 150980.171 83800.05474 1.544917686 1.72031896 2.365667075 0.886325487 1.914244015 1.368410428 1.387995315 1.473115374 1.801671508 1 16.35466357 -5.257043809 24.99980114 1.44329382 1.861302955 0.269354737 0.352259296 554.5763341 3154141.221 0.092801662 0.153922401 5.53E-06 5.257043809 0.418009135 SCDEPLTPPPHS(ph)PTSMLQLIHDPVSPR ddPTM_HeLa_A485_30min_R1 6 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 SCDEPLTPPPHS(0.993)PT(0.003)S(0.003)MLQLIHDPVSPR;SCDEPLTPPPHS(0.951)PT(0.041)S(0.008)MLQLIHDPVSPR;SCDEPLT(0.003)PPPHS(0.812)PT(0.092)S(0.092)MLQLIHDPVS(0.001)PR;SCDEPLTPPPHS(0.984)PT(0.007)S(0.009)MLQLIHDPVSPR;SCDEPLT(0.001)PPPHS(0.671)PT(0.24)S(0.087)MLQLIHDPVSPR;SCDEPLTPPPHS(0.99)PT(0.005)S(0.005)MLQLIHDPVSPR ;;;;; 131.9 3.59E-06 3321870000 765917 903227 907980 749987 1084096 822529 1061311 1058985 838977 1093068 TRUE FALSE FALSE 936292.5943 1008851.541 1243879.586 790956.8907 976159.5957 865595.3466 834553.2347 799267.2683 1007351.988 820586.264 1.141004469 1.22942777 1.515842564 0.963892433 1.189588028 1.05484991 1.017020722 0.974019799 1.227600354 1 19.64629548 -5.283735206 24.99886434 1.063183008 1.288825277 0.444664572 0.119970179 721.8080436 809314.9261 0.03342166 0.049614846 5.20E-06 5.283735206 0.225642269 SCDEPLTPPPHS(ph)PTSMLQLIHDPVSPR ddPTM_HeLa_A486_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 SCDEPLTPPPHS(0.716)PT(0.162)S(0.121)MLQLIHDPVSPR;SCDEPLTPPPHS(0.966)PT(0.017)S(0.017)MLQLIHDPVSPR ; 126.64 5.57E-06 699930000 402333 438120 410936 52188 512280 360513 426088 414915 372771 322224 TRUE FALSE FALSE 374131.5343 403401.7756 570061.4244 121496.3014 448025.0656 316036.5715 319476.2757 320447.912 405083.0904 241537.0131 1.548961501 1.670144755 2.36014107 0.503013182 1.854891968 1.308439512 1.322680411 1.326703133 1.677105655 1 17.88188476 -1.000000072 0.047173612 0.157359996 3.801142583 0.120533942 0.445068602 1201.280536 4.298537365 81.66188131 326.0659195 0.099999983 1.000000072 3.643782587 SCDEPLTPPPHSPTSMLQLIHDPVS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 SCDEPLTPPPHSPTSMLQLIHDPVS(0.999)PR 131.08 3.90E-06 120430000 75900 90333 71089 20793 91815 81735 84994 105910 60366 83108 TRUE FALSE FALSE 70579.80195 83174.68409 98616.56463 48407.15482 80298.70656 71651.36672 63727.60223 81796.605 65598.57348 62297.21586 1.132952749 1.335126826 1.583001155 0.777035605 1.2889614 1.150153594 1.022960679 1.313005788 1.052993662 1 15.92688007 -1.000034524 0.089390924 0.891444085 2.00876716 0.113111404 0.200361276 359.0479979 2.314895202 3.817756644 49.2096453 0.099992051 1.000034524 1.117323075 SCET(ph)SSQDLGFSYYPAENLIEYK ddPTM_HeLa_A486_30min_R1 1 SCETSSQDLGFSYYPAENLIEYK 23 0 S5FZ81;Q8WUB8-2;Q8WUB8;Q8WUB8-3 S5FZ81 PHF10 PHD finger protein 10 1 0 S(0.387)CET(0.485)S(0.064)S(0.064)QDLGFSYYPAENLIEYK 162.65 3.88E-14 70433000 49756 65434 27983 27141 50017 66537 73088 68246 49613 76745 TRUE FALSE FALSE 46268.36134 60248.77153 38818.76701 63185.61963 43743.40147 58328.34144 54800.60935 52707.8756 53913.49479 57527.55247 0.804281763 1.047302883 0.674785652 1.098354039 0.760390449 1.013920094 0.952597616 0.916219678 0.937176926 1 15.81196547 SCFES(ph)S(ph)PDPELK ddPTM_HeLa_A485_30min_R1 3 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SCFES(1)S(1)PDPELK;SCFES(1)S(1)PDPELK;SCFES(1)S(1)PDPELK ;; 174.39 1.51E-10 810920000 1585690 1385850 1069850 2539820 2013310 1521150 2503590 2309440 1319250 3282990 TRUE FALSE FALSE 1938421.27 1547913.102 1465632.035 2678563.935 1812857.787 1600795.062 1968677.544 1743046.219 1584011.374 2464601.012 0.786505102 0.628058292 0.594673145 1.086814427 0.735558323 0.649514893 0.798781439 0.707232615 0.642704992 1 21.23292268 -10.80619344 2.506801286 1.085571036 0.737945964 0.259349933 0.133495493 32196233.12 21531943.14 16731137.4 0.036484114 1.56E-11 10.80619344 -0.347625072 SCFES(ph)S(ph)PDPELK ddPTM_HeLa_A486_30min_R1 4 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SCFES(1)S(1)PDPELK;SCFES(1)S(1)PDPELK;S(0.003)CFES(0.997)S(1)PDPELK;S(0.001)CFES(0.999)S(1)PDPELK ;;; 162.93 5.76E-10 904670000 2298700 2329350 1139560 1241460 2017520 2718890 3286130 3106440 1820480 3816590 TRUE FALSE FALSE 2137573 2144763.823 1580828.15 2890181.62 1764463.829 2383460.995 2463905.517 2399171.425 1978280.672 2860891.022 0.747170369 0.749683859 0.552564966 1.010238278 0.616753248 0.833118416 0.86123711 0.838609862 0.691491097 1 21.44803311 -14 0.138446115 1.762903755 0.687521805 0.246702404 0.123189193 197.3331857 1.67951838 41.85777252 0.755461605 1.00E-14 14 -1.07538195 SCFES(ph)SPDPELK ddPTM_HeLa_A485_30min_R1 2 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.01)CFES(0.553)S(0.437)PDPELK;SCFES(0.612)S(0.388)PDPELK ; 136.96 1.19E-05 1169180000 1577190 1468720 1065230 2212060 2041380 1618400 2478380 2463110 1341950 3051300 TRUE FALSE FALSE 1928030.474 1640474.028 1459302.905 2332899.237 1838133.039 1703136.921 1948853.866 1859028.41 1611267.056 2290667.065 0.841689525 0.716155592 0.637064603 1.018436626 0.802444435 0.743511332 0.850780062 0.811566394 0.70340517 1 21.12733636 -11.15471783 2.318648311 1.473339267 0.792797654 0.285640219 0.098821859 11048991.64 2850151.022 27445804.36 0.025248329 7.00E-12 11.15471783 -0.680541612 SCFES(ph)SPDPELK ddPTM_HeLa_A486_30min_R1 1 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SCFES(0.5)S(0.5)PDPELK 168.02 1.86E-10 1131600000 1863700 1903500 942080 910210 1700300 1954000 2716400 2505900 1450900 2816800 TRUE FALSE FALSE 1733064.254 1752659.728 1306878.606 2119014.879 1487032.519 1712935.347 2036727.989 1935361.273 1576665.18 2111454.946 0.820791492 0.830072046 0.618946953 1.003580438 0.704269121 0.811258299 0.964608785 0.916600791 0.746719784 1 21.00980603 -6.626075871 7.730860575 0.899602904 0.795177788 0.188017785 0.110731782 0.429816937 28.75717198 0.041032973 0.031691889 2.37E-07 6.626075871 -0.104425116 SCFESS(ph)PDPELK ddPTM_HeLa_A485_30min_R1 4 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SCFES(0.001)S(0.999)PDPELK;SCFES(0.001)S(0.999)PDPELK;SCFES(0.001)S(0.999)PDPELK;SCFES(0.001)S(0.999)PDPELK ;;; 324.41 2.31E-61 56703000000 44899800 40650200 29722300 64063500 56413500 43100500 73551000 68630100 36780600 80437400 TRUE FALSE FALSE 54887605.61 45403887.28 40717815.62 67563126.79 50796773.86 45357175.53 57836227.99 51798460.37 44162129.05 60385836.52 0.908948336 0.751896304 0.674294139 1.11885718 0.841203447 0.751122749 0.957778037 0.857791551 0.731332571 1 25.84770687 -11.52352634 2.251537081 3.33883164 0.845076957 0.126638821 0.123096692 5155511.148 628323.2978 63003434.25 0.032305707 3.00E-12 11.52352634 -2.493754683 SCFESS(ph)PDPELK ddPTM_HeLa_A486_30min_R1 6 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SCFES(0.003)S(0.997)PDPELK;SCFESS(1)PDPELK;SCFES(0.002)S(0.998)PDPELK;SCFES(0.001)S(0.999)PDPELK;SCFES(0.001)S(0.999)PDPELK;SCFES(0.276)S(0.724)PDPELK ;;;;; 337.53 2.10E-73 65121520000 94087100 91321000 47281000 48587500 87045700 102705500 135014000 123884500 71445900 141883200 TRUE FALSE FALSE 87492080.16 84084391.37 65589469.43 113114155.5 76127616.64 90034739.64 101232069.2 95678703.73 77638888.14 106354723.2 0.822644049 0.790603265 0.616704811 1.063555544 0.715789711 0.846551398 0.951834259 0.899618755 0.729999438 1 26.66430886 -13.99999959 0.069309767 1.537751272 0.630905116 0.157352783 0.120274413 590.761636 2.945037209 52.03307696 6.600106518 1.00E-14 13.99999959 -0.906846156 SCFESS(ph)PDPELKS(ph)R ddPTM_HeLa_A486_30min_R1 1 SCFESSPDPELKSR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.015)CFES(0.131)S(0.854)PDPELKS(1)R 82.877 0.0037085 550390000 492250 434380 164910 251170 257900 465880 572610 464050 329340 895390 TRUE FALSE FALSE 457745.817 399958.1468 228767.5684 584736.4534 225551.7772 408404.4623 429336.9215 358395.9451 357887.4564 671178.516 0.682003083 0.595904275 0.340844593 0.871208538 0.336053333 0.60848858 0.639676198 0.533980061 0.533222455 1 19.35633701 -10.67615915 2.558168931 1.063914005 0.569126435 0.428931034 0.148390861 15610607.1 12743592.03 6488341.148 0.037061784 2.11E-11 10.67615915 -0.494787571 SCGPASQSTLGLKGS(ph)LKR ddPTM_HeLa_A486_30min_R1 2 SCGPASQSTLGLKGSLKR 18 2 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 SCGPASQSTLGLKGS(1)LKR;SCGPASQSTLGLKGS(1)LKR ; 214.65 8.26E-27 1757550000 777300 607410 305310 461230 598530 764500 1001000 900180 491770 1199500 TRUE FALSE FALSE 722815.284 559276.6195 423534.2085 1073766.749 523456.7863 670183.7629 750539.2125 695228.6648 534397.0196 899137.3926 0.803898592 0.622014638 0.471045039 1.194218768 0.58217664 0.745363021 0.83473251 0.773217387 0.594344117 1 19.77818206 -11.6007592 2.090325867 5.725292237 0.737817657 0.151209309 0.187818535 6942184.658 255916.404 156651010 0.045766886 2.51E-12 11.6007592 -4.98747458 SCGTDSQSENEAS(ph)PVKRPR ddPTM_HeLa_A486_30min_R1 1 SCGTDSQSENEASPVKRPR 19 2 H0Y398;C9JQ48;Q9H8U3 H0Y398 ZFAND3 AN1-type zinc finger protein 3 1 0 SCGTDSQSENEAS(1)PVKRPR 197.4 9.19E-26 246960000 110840 106230 60595 48897 105800 111650 139630 132110 89308 146140 TRUE FALSE FALSE 103070.6884 97811.94792 84059.00679 113834.6871 92529.57745 97875.75817 104693.0971 102031.4369 97049.28935 109545.5928 0.940893063 0.892888024 0.767342662 1.039153509 0.844667276 0.893470524 0.955703415 0.931406133 0.885926005 1 16.74117192 -13.99999994 0.173340949 1.3777923 0.883697656 0.149778948 0.067621689 251.8754962 2.392032549 32.66107763 0.227958976 1.00E-14 13.99999994 -0.494094644 SCLAKGS(ph)PER ddPTM_HeLa_A485_30min_R1 2 SCLAKGSPER 10 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-3;Q6NYC8-4 A0A0G2JHC2 PPP1R18 Phostensin 1 0 S(0.001)CLAKGS(0.999)PER;S(0.004)CLAKGS(0.996)PER ; 65.805 0.009101 770050000 355100 1022780 518110 281980 1261670 1402220 2088700 4356700 550690 541960 TRUE FALSE FALSE 434090.7699 1142385.224 709780.4494 297383.8534 1136053.705 1475638.071 1642432.182 3288212.494 661208.4318 406859.346 1.066930806 2.807813646 1.744535197 0.730925457 2.79225171 3.626899776 4.036854992 8.081939191 1.625152373 1 18.63417061 -6.177033624 2.410615858 4.206875739 1.693167356 0.189782029 1.868868156 0.404828507 4.612061569 0.676838364 0.661100475 6.65E-07 6.177033624 -2.513708383 SCLLEEEEES(ph)GEEAAEAME ddPTM_HeLa_A485_30min_R1 1 SCLLEEEEESGEEAAEAME 19 0 Q969H6-2;Q969H6 Q969H6-2 POP5 Ribonuclease P/MRP protein subunit POP5 1 0 SCLLEEEEES(1)GEEAAEAME 127.37 4.88E-06 50960000 31972 49064 52564 46024 63707 49150 58386 64136 46044 62201 TRUE FALSE FALSE 39084.0611 54801.608 72009.61097 48538.17458 57364.10739 51723.418 45911.35413 48406.54544 55284.60846 46695.43542 0.836999607 1.17359668 1.542112421 1.03946294 1.228473551 1.107676104 0.983208609 1.036644053 1.183940314 1 15.51099391 -6.509461074 8.444496223 1.052689981 1.177787443 0.085243135 0.171953353 0.449841837 224.0338014 0.064422009 0.05374587 3.09E-07 6.509461074 0.125097462 SCMLTGT(ph)PESVQSAK ddPTM_HeLa_A485_30min_R1 3 SCMLTGTPESVQSAK 15 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4;C9JSZ1 FUBP1 Far upstream element-binding protein 1 1 0 SCMLT(0.004)GT(0.996)PESVQSAK;SCMLT(0.002)GT(0.994)PES(0.004)VQSAK;S(0.002)CMLT(0.073)GT(0.924)PES(0.001)VQSAK ;; 279.44 6.65E-68 205139000 761330 770480 621032 999100 993800 758800 1121510 1090000 733630 1283060 TRUE FALSE FALSE 930685.2319 860580.9337 850777.5801 1053678.303 894853.7826 798529.5947 881890.2266 822675.7909 880862.8117 963216.755 0.966226166 0.89344473 0.883267007 1.093916087 0.929026388 0.829023779 0.915567781 0.854092069 0.914501131 1 19.87750096 -6.004646216 24.98765082 0.892625789 0.956888499 0.124455545 0.068097825 381.2513482 2050409.762 0.021447862 0.023704759 9.89E-07 6.004646216 0.06426271 SCMLTGT(ph)PESVQSAK ddPTM_HeLa_A486_30min_R1 4 SCMLTGTPESVQSAK 15 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4;C9JSZ1 FUBP1 Far upstream element-binding protein 1 1 0 SCMLTGT(0.998)PES(0.002)VQSAK;SCMLT(0.004)GT(0.967)PES(0.029)VQSAK;SCMLT(0.003)GT(0.997)PES(0.001)VQSAK;SCMLT(0.001)GT(0.999)PESVQSAK ;;; 268.93 3.46E-54 1950750000 2962380 2877380 1643790 1076401 2942160 3229820 3412780 3487380 2424040 3325410 TRUE FALSE FALSE 2754732.46 2649365.93 2280309.51 2505915.926 2573126.858 2831357.647 2558866.347 2693379.703 2634157.739 2492705.691 1.105117411 1.062847467 0.914792917 1.005299557 1.0322626 1.135857176 1.026541704 1.080504495 1.056746389 1 21.24928113 -6.014270786 24.36467108 1.065228625 1.017460902 0.089038204 0.056104689 1017.105337 1736514.499 0.018772121 0.019471845 9.68E-07 6.014270786 -0.047767723 SCNCLLLK ddPTM_HeLa_A485_30min_R1 2 SCNCLLLK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 194.44 1.56E-09 301540000 260690 278770 235870 284830 374960 307110 448570 462570 253000 388930 FALSE FALSE TRUE 318679.5911 311369.7265 323128.1284 300389.5417 337627.6658 323189.8047 352729.355 349123.9822 303774.7793 291976.9087 1.091454775 1.066419012 1.106690696 1.028812665 1.156350573 1.106901933 1.208072777 1.195724634 1.040406862 1 18.15549475 -5.775546208 24.99178871 1.131653484 1.075231501 0.082377876 0.063491295 438.2496751 776404.0432 0.019133698 0.021800277 1.68E-06 5.775546208 -0.056421983 SCNCLLLK ddPTM_HeLa_A486_30min_R1 2 SCNCLLLK 8 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 178.99 3.44E-06 116564000 124944 137159 81215 46968 152976 150182 171057 163030 121857 164219 FALSE FALSE TRUE 116186.0708 126290.0213 112663.623 109343.8776 133788.3236 131654.0718 128256.7293 125911.6279 132419.6629 123097.4935 0.943854074 1.025934954 0.915238969 0.888270545 1.086848479 1.069510581 1.041911786 1.022861021 1.075729969 1 16.90944186 -5.769370969 24.9999688 1.051243449 0.94721925 0.62145656 0.040527429 124.7123561 393086.0484 0.012994764 0.014995777 1.70E-06 5.769370969 -0.104024199 SCPETLTHAVGMSES(ph)PIGPK ddPTM_HeLa_A485_30min_R1 3 SCPETLTHAVGMSESPIGPK 20 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 SCPETLTHAVGMSES(1)PIGPK;SCPETLTHAVGMS(0.006)ES(0.994)PIGPK;SCPETLTHAVGMS(0.094)ES(0.906)PIGPK ;; 242.54 2.17E-46 3791820000 1200300 1144540 799480 1107920 1561240 1200450 1639090 1744490 960500 1645300 TRUE FALSE FALSE 1467302.594 1278383.997 1095240.921 1168442.864 1405797.464 1263303.706 1288885.031 1316651.092 1153263.54 1235156.99 1.187948258 1.034997177 0.886722037 0.945987331 1.138152863 1.022787967 1.043498958 1.065978741 0.933697943 1 20.23626299 -7.760325533 24.99989171 0.96684897 1.035012211 0.111826078 0.082049502 73.25712408 1644552.997 0.066272736 0.02183032 1.74E-08 7.760325533 0.068163241 SCPETLTHAVGMSES(ph)PIGPK ddPTM_HeLa_A486_30min_R1 6 SCPETLTHAVGMSESPIGPK 20 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 SCPETLTHAVGMSES(1)PIGPK;SCPETLTHAVGMSES(1)PIGPK;SCPETLTHAVGMS(0.029)ES(0.971)PIGPK;SCPETLTHAVGMS(0.002)ES(0.998)PIGPK;SCPETLTHAVGMS(0.294)ES(0.706)PIGPK;SCPETLTHAVGMS(0.002)ES(0.998)PIGPK ;;;;; 275.54 1.61E-72 4223020000 4309920 4141850 2487750 913214 4150620 4198490 5315990 4738840 3077320 4285570 TRUE FALSE FALSE 4007816.864 3813634.722 3451073.424 2126008.343 3630010.537 3680522.991 3985873.075 3659909.58 3344064.575 3212435.378 1.247594548 1.187147529 1.074285711 0.661805793 1.1299871 1.145711138 1.24076366 1.139294383 1.040974894 1 21.615236 -5.928627424 25 1.130950807 1.035359468 0.0441638 0.157076863 138.1135379 48374.56092 0.052363326 0.059374442 1.18E-06 5.928627424 -0.095591339 SCQKS(ph)PAQQEPPQR ddPTM_HeLa_A485_30min_R1 1 SCQKSPAQQEPPQR 14 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 S(0.398)CQKS(0.602)PAQQEPPQR 77.031 0.0032034 308520000 94885 115640 92480 126610 186810 139370 171490 254200 102920 163780 TRUE FALSE FALSE 115991.8409 129163.0921 126692.2004 133526.3837 168210.5405 146667.1977 134849.7606 191857.0514 123575.1 122952.6601 0.943386184 1.050510757 1.030414472 1.085998331 1.368091917 1.192875352 1.096761635 1.560413993 1.005062435 1 16.90774342 -5.558867737 8.872162609 1.226355517 1.019822873 0.227693738 0.160222149 0.368686598 84.04067357 0.04493109 0.058252258 2.76E-06 5.558867737 -0.206532645 SCQKS(ph)PAQQEPPQR ddPTM_HeLa_A486_30min_R1 1 SCQKSPAQQEPPQR 14 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 S(0.008)CQKS(0.992)PAQQEPPQR 96.718 0.00045122 225160000 101180 87007 68665 67121 146630 123210 166780 183060 86507 142160 TRUE FALSE FALSE 94087.80449 80112.24845 95253.92691 156261.0801 128238.2981 108009.6029 125049.88 141381.2342 94005.49641 106562.2107 0.882937806 0.751788537 0.89388092 1.466383618 1.203412516 1.013582603 1.173491796 1.326748321 0.882165411 1 16.70133639 -5.023417438 23.75458548 1.164417459 0.818730971 0.442180976 0.160372101 320.6396951 325257.1489 0.042574478 0.074447065 9.48E-06 5.023417438 -0.345686488 SCS(ph)ASCVPHGAK ddPTM_HeLa_A485_30min_R1 2 SCSASCVPHGAK 12 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 S(0.066)CS(0.931)AS(0.003)CVPHGAK;S(0.482)CS(0.501)AS(0.017)CVPHGAK ; 130.1 2.18E-05 814870000 1021820 1027440 837840 858590 1203560 958380 1322700 1334630 908840 1236330 TRUE FALSE FALSE 1249120.334 1147590.17 1147791.881 905492.5976 1083729.34 1008559.295 1040094.34 1007309.9 1091235.852 928135.684 1.345838066 1.236446557 1.236663886 0.975603689 1.167641067 1.086650705 1.120627466 1.085304571 1.175728797 1 19.8239762 -5.075766262 6.384839788 1.095594035 1.278620934 0.634503979 0.065057757 0.14382829 9.851639883 0.01678535 0.029662609 8.40E-06 5.075766262 0.183026898 SCS(ph)ASCVPHGAK ddPTM_HeLa_A486_30min_R1 2 SCSASCVPHGAK 12 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 S(0.13)CS(0.87)AS(0.001)CVPHGAK;S(0.227)CS(0.762)AS(0.011)CVPHGAK ; 128.22 2.54E-05 628380000 948830 874890 547200 126942 908520 935920 1051660 1156290 840940 830650 TRUE FALSE FALSE 882321.9168 805560.5301 759090.4945 295527.3913 794564.95 820455.7061 788523.5447 893028.0086 913833.3563 622649.8334 1.417043528 1.293761737 1.219129041 0.474628556 1.276102405 1.317683973 1.266399672 1.434237931 1.467652133 1 19.24806152 -5.974960863 24.99998938 1.319575199 1.092332044 0.112342063 0.261472826 475.1656971 474420.4707 0.084826981 0.096181581 1.06E-06 5.974960863 -0.227243155 SCS(ph)PLAFSAFGDLTIK ddPTM_HeLa_A485_30min_R1 2 SCSPLAFSAFGDLTIK 16 0 E9PLZ8;Q96EY5;Q96EY5-2 E9PLZ8 MVB12A Multivesicular body subunit 12A 1 0 SCS(1)PLAFSAFGDLTIK;S(0.01)CS(0.99)PLAFSAFGDLTIK ; 319.84 1.65E-78 286760000 181281 162937 141304 245751 257753 192586 312040 325330 164007 317050 TRUE FALSE FALSE 221606.333 181991.0648 193578.2298 259175.7549 232090.2063 202669.5052 245370.1049 245542.3074 196921.7005 238015.2699 0.93105931 0.764619282 0.813301726 1.088903897 0.975106372 0.851497911 1.030900685 1.031624179 0.827349021 1 17.86069461 -5.229755301 24.81366653 0.971053153 0.829155982 0.349857398 0.0846987 661.1865206 517813.2241 0.022757057 0.039411674 5.89E-06 5.229755301 -0.141897171 SCS(ph)PLAFSAFGDLTIK ddPTM_HeLa_A486_30min_R1 2 SCSPLAFSAFGDLTIK 16 0 E9PLZ8;Q96EY5;Q96EY5-2 E9PLZ8 MVB12A Multivesicular body subunit 12A 1 0 S(0.002)CS(0.998)PLAFSAFGDLTIK;S(0.01)CS(0.99)PLAFSAFGDLTIK ; 262.23 9.14E-51 231080000 266590 323030 210048 198252 342670 375660 404770 406020 299960 434740 TRUE FALSE FALSE 247903.4177 297431.9263 291384.2109 461540.6751 299689.1333 329314.8886 303492.2648 313578.1094 325960.7743 325878.2743 0.76072398 0.91270867 0.894150466 1.416297776 0.919635204 1.010545699 0.931305609 0.962255339 1.000253162 1 18.31397365 -4.643064184 2.295265954 1.025793444 0.785504693 0.253037547 0.138930664 0.481308934 4.667168124 0.038580232 0.168526517 2.27E-05 4.643064184 -0.240288751 SCS(ph)SPAVSAVSQLPLS(ph)PK ddPTM_HeLa_A485_30min_R1 1 SCSSPAVSAVSQLPLSPK 18 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 S(0.053)CS(0.473)S(0.473)PAVSAVSQLPLS(1)PK 154.42 3.87E-08 303460000 171420 141500 108450 245470 197820 156400 257610 260880 138080 326780 TRUE FALSE FALSE 209551.7876 158047.1941 148570.168 258879.4045 178124.3462 164588.8622 202569.519 196898.771 165791.3895 245319.7599 0.854198568 0.64424975 0.60561843 1.055273349 0.726090496 0.670915634 0.825736659 0.802620918 0.675817511 1 17.90430392 -10.35505655 3.448883926 1.001400724 0.762119682 0.246394274 0.124721839 77955548.8 126822932.2 1144457.992 0.030603549 4.42E-11 10.35505655 -0.239281043 SCS(ph)VTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A485_30min_R1 1 SCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 35 0 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.153)CS(0.84)VT(0.006)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER 161.66 2.44E-14 540310000 103830 119770 109380 81348 158660 102190 182690 161070 145790 180150 TRUE FALSE FALSE 126926.6253 133776.0596 149844.2137 85791.83526 142863.2533 107540.5104 143656.7891 121567.33 175048.7157 135241.9204 0.938515402 0.989161195 1.10797165 0.634358304 1.056353332 0.795171424 1.06222086 0.89888793 1.294337696 1 17.04518288 -7.741399969 24.99144464 1.14716896 0.936438539 0.247439926 0.147764908 274.2870094 342069.7564 0.094049338 0.035445905 1.81E-08 7.741399969 -0.21073042 SCS(ph)VTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER ddPTM_HeLa_A486_30min_R1 2 SCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEER 35 0 Q96PU5-9;Q96PU5-6;Q96PU5-5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.121)CS(0.749)VT(0.127)DAVAEQGHLPPPS(0.001)VAY(0.001)VHTTPGLPSGWEER;S(0.233)CS(0.751)VT(0.016)DAVAEQGHLPPPSVAYVHTTPGLPSGWEER ; 143.89 1.69E-09 1238400000 174820 198804 200672 13676.2 237940 160518 179214 161194 196175 81417 TRUE FALSE FALSE 162566.0208 183050.047 278377.5726 31838.88476 208095.3465 140714.9212 134372.7617 124493.645 213179.607 61029.65326 2.663721848 2.999362395 4.561349405 0.521695324 3.409741582 2.305681151 2.20176184 2.039887798 3.493049617 1 15.89722277 -10.22884108 0.208790159 2.47E-26 3.04914255 0.181799661 1.024867153 38.58087119 1.637005133 28.65064985 2.666186622 5.90E-11 10.22884108 3.04914255 SCSPS(ph)PVSPQVQPQAADTISDSVAVPASLLGMR ddPTM_HeLa_A485_30min_R1 1 SCSPSPVSPQVQPQAADTISDSVAVPASLLGMR 33 0 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.082)CS(0.082)PS(0.509)PVS(0.327)PQVQPQAADTISDSVAVPASLLGMR 93.776 0.00012753 62373000 28317 37458 31405 23661 41091 28747 35214 38807 28159 38612 TRUE FALSE FALSE 34616.01896 41838.38726 43023.01637 24953.54052 36999.83576 30252.14847 27690.24123 29289.5224 33810.25301 28986.739 1.194201906 1.443363024 1.484230992 0.860860565 1.276440091 1.043654771 0.955272728 1.010445583 1.166404162 1 14.82310542 -5.252065963 24.98193643 1.051043617 1.380875089 0.581938899 0.127748051 464.1658974 1237087.883 0.034233647 0.058293166 5.60E-06 5.252065963 0.329831471 SCSS(ph)PAVSAVSQLPLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SCSSPAVSAVSQLPLSPK 18 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 S(0.001)CS(0.076)S(0.923)PAVSAVSQLPLS(1)PK 226.72 2.47E-34 339210000 283250 259830 137640 200420 265380 319150 455560 400440 217340 469720 TRUE FALSE FALSE 263395.6377 239240.1245 190937.8941 466587.8887 232093.5658 279776.5179 341574.0696 309268.5535 236179.2062 352099.0546 0.74807255 0.679468239 0.542284598 1.325160867 0.659171227 0.79459605 0.970107886 0.878356671 0.670774894 1 18.42562183 SCT(ph)PS(ph)PDQISHR ddPTM_HeLa_A485_30min_R1 2 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 0 S(0.358)CT(0.642)PS(1)PDQISHR;S(0.36)CT(0.64)PS(1)PDQISHR ; 101.01 0.0015626 3010800000 854470 959920 1022210 1064590 1301050 925870 1275700 1274820 1002460 1521640 TRUE FALSE FALSE 1044543.904 1072174.294 1400368.017 1122745.856 1171512.894 974347.1215 1003136.273 962168.3962 1203644.527 1142323.152 0.914403163 0.938591056 1.225894804 0.982861859 1.025552964 0.852952267 0.87815455 0.842290901 1.053681285 1 20.1235394 -6.239708624 22.82021097 0.91260516 1.022736665 0.169726401 0.099457296 421.9089252 443059.9952 0.033423592 0.033380735 5.76E-07 6.239708624 0.110131505 SCT(ph)PS(ph)PDQISHR ddPTM_HeLa_A486_30min_R1 2 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 0 S(0.062)CT(0.938)PS(1)PDQISHR;SCT(1)PS(1)PDQISHR ; 203.74 9.89E-17 2862500000 1793700 2294670 1729730 689260 2571840 2106940 2304170 2292790 1869190 2139840 TRUE FALSE FALSE 1667970.893 2112831.992 2399527.78 1604632.113 2249255.846 1847007.165 1727642.295 1770771.768 2031212.894 1604010.136 1.039875531 1.317218604 1.495955497 1.000387764 1.402270344 1.15149345 1.077076919 1.103965448 1.266334201 1 20.61325183 -6.501150583 23.86788547 1.119618935 1.256722459 0.159030911 0.152543566 817.4045926 897902.2882 0.052823377 0.046110957 3.15E-07 6.501150583 0.137103524 SCT(ph)PSPDQISHR ddPTM_HeLa_A485_30min_R1 3 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.145)CT(0.852)PS(0.003)PDQISHR;S(0.153)CT(0.843)PS(0.004)PDQISHR;S(0.147)CT(0.827)PS(0.027)PDQISHR ;; 131.86 3.20E-05 3431190000 1210310 1452810 1337160 1312330 1842450 1388750 1757610 1620620 1305560 1908320 TRUE FALSE FALSE 1479539.284 1622703.492 1831831.128 1384019.265 1659009.209 1461462.803 1382082.265 1223160.404 1567573.917 1432610.944 1.032757212 1.132689582 1.278666155 0.966081734 1.158031925 1.020139354 0.964729657 0.853798032 1.094207693 1 20.45021544 -6.46660216 3.682236888 0.967438395 1.115482683 0.317494833 0.093921604 0.2707073 7.355456059 0.035283636 0.029500696 3.42E-07 6.46660216 0.148044288 SCT(ph)PSPDQISHR ddPTM_HeLa_A486_30min_R1 3 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.17)CT(0.826)PS(0.004)PDQISHR;S(0.162)CT(0.838)PSPDQISHR;S(0.162)CT(0.837)PS(0.001)PDQISHR ;; 144.88 2.53E-07 3373600000 1678390 2320080 2057150 500050 2787010 1838050 2050130 1964600 1843780 1683820 TRUE FALSE FALSE 1560743.528 2136228.411 2853733.572 1164141.671 2437437.218 1611290.079 1537165.79 1517303.467 2003600.335 1262180.512 1.236545417 1.692490409 2.260955184 0.922325816 1.931132033 1.276592423 1.217865254 1.202128739 1.587411876 1 20.26748682 -6.399866382 12.14406241 1.265653181 1.611399549 0.189060671 0.364209798 1.066302672 100.6556253 0.125243786 0.11043177 3.98E-07 6.399866382 0.345746368 SCTKPS(ph)PSK ddPTM_HeLa_A485_30min_R1 5 SCTKPSPSK 9 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.001)CT(0.001)KPS(0.933)PS(0.065)K;S(0.035)CT(0.031)KPS(0.92)PS(0.014)K;SCTKPS(0.896)PS(0.104)K;S(0.06)CT(0.229)KPS(0.688)PS(0.023)K;S(0.001)CT(0.002)KPS(0.985)PS(0.012)K ;;;; 97.463 0.0011381 8318050000 3622090 2372720 771600 5942340 1688420 2873700 4183820 5313200 2237750 6945480 TRUE FALSE FALSE 4427811.424 2650188.964 1057046.949 6266954.987 1520314.976 3024162.488 3289912.678 4010129.369 2686845.899 5214099.658 0.849199615 0.508273554 0.202728566 1.201924665 0.29157766 0.579997063 0.630964672 0.769093349 0.515303902 1 22.31398673 -13.99994846 0.398227019 7.174317723 0.605134275 0.15288068 0.268772145 1384.86239 9.782412516 7428.481799 0.164413942 1.00E-14 13.99994846 -6.569183448 SCTKPS(ph)PSK ddPTM_HeLa_A486_30min_R1 6 SCTKPSPSK 9 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.009)CT(0.008)KPS(0.976)PS(0.007)K;S(0.004)CT(0.004)KPS(0.987)PS(0.004)K;SCTKPS(0.743)PS(0.257)K;SCTKPS(0.845)PS(0.154)K;SCTKPS(0.97)PS(0.03)K;SCT(0.004)KPS(0.977)PS(0.019)K ;;;;; 91.307 0.0016266 4413600000 4641590 1415410 1540360 2670960 1453880 7307800 4613490 3452470 3804580 6967370 TRUE FALSE FALSE 4316238.51 1303247.757 2136828.644 6218129.863 1271520.814 6406237.936 3459146.005 2666417.948 4134364.058 5222695.202 0.826438906 0.249535481 0.409142897 1.190597885 0.243460659 1.226615318 0.662329673 0.510544431 0.791615037 1 22.31636308 SCTPS(ph)PDQISHR ddPTM_HeLa_A485_30min_R1 3 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.037)CT(0.037)PS(0.927)PDQISHR;SCT(0.005)PS(0.995)PDQISHR;SCTPS(1)PDQISHR ;; 171.21 1.55E-10 1067800000 458800 659750 668020 587590 775830 591960 691950 734440 571010 703010 TRUE FALSE FALSE 560858.4772 736902.0234 915148.3966 619688.5538 698585.6411 622954.1103 544109.2298 554317.4384 685606.4694 527762.5449 1.062709892 1.396275712 1.734015431 1.174180623 1.323674156 1.180368172 1.03097356 1.050315987 1.299081331 1 19.00952944 -6.160345547 1.591457151 1.099457958 1.377813344 0.288328903 0.179621709 0.493625742 2.497876639 0.077404303 0.075941695 6.91E-07 6.160345547 0.278355385 SCTPS(ph)PDQISHR ddPTM_HeLa_A486_30min_R1 2 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SCT(0.002)PS(0.998)PDQISHR;S(0.02)CT(0.004)PS(0.976)PDQISHR ; 116.86 0.00016645 381600000 618150 694740 591120 222465 761550 640170 619460 648440 582010 695930 TRUE FALSE FALSE 574820.8771 639686.2722 820017.4947 517909.7628 666029.2978 561192.3342 464464.556 500804.3673 632459.0954 521664.5983 1.101897424 1.226240528 1.571924753 0.992802204 1.276738541 1.075772318 0.890350922 0.960012178 1.21238646 1 18.99276301 -6.394743232 4.286551792 1.008884777 1.238448553 0.301563598 0.158270978 0.293614189 8.858951601 0.058344021 0.050715808 4.03E-07 6.394743232 0.229563776 SCTPSPDQISHRAS(ph)LEDAPVDDLTR ddPTM_HeLa_A485_30min_R1 4 SCTPSPDQISHRASLEDAPVDDLTR 25 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SCTPSPDQIS(0.013)HRAS(0.987)LEDAPVDDLTR;SCTPSPDQISHRAS(1)LEDAPVDDLTR;SCTPSPDQISHRAS(1)LEDAPVDDLTR;SCTPSPDQISHRAS(1)LEDAPVDDLTR ;;; 295.71 7.99E-90 2052010000 664253 975530 866987 587243 1220600 834600 1125970 1335180 848750 877822 TRUE FALSE FALSE 812013.7882 1089609.748 1187721.57 619322.5981 1099072.778 878298.3655 885397.3112 1007725.012 1019086.34 658997.1305 1.232196243 1.653436255 1.802316755 0.939795592 1.667796 1.332780258 1.343552605 1.529179665 1.546419996 1 19.32991266 -9.911911958 4.028499171 0.999981782 1.453272859 0.244713445 0.236948563 30711025.45 68078675.71 8531.445869 0.057277784 1.22E-10 9.911911958 0.453291077 SCTPSPDQISHRAS(ph)LEDAPVDDLTR ddPTM_HeLa_A486_30min_R1 4 SCTPSPDQISHRASLEDAPVDDLTR 25 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SCTPSPDQISHRAS(1)LEDAPVDDLTR;SCTPSPDQIS(0.012)HRAS(0.988)LEDAPVDDLTR;SCTPSPDQIS(0.001)HRAS(0.972)LEDAPVDDLT(0.027)R;SCTPSPDQISHRAS(1)LEDAPVDDLTR ;;; 325.66 9.19E-107 2040140000 708074 679072 644751 195809 882962 653849 830166 801865 593754 659802 TRUE FALSE FALSE 658441.6691 625259.8616 894415.8542 455853.2476 772212.6727 573183.7582 622449.6862 619297.8441 645221.0748 494583.2846 1.331305949 1.264215514 1.808423135 0.921691577 1.561340014 1.158922624 1.258533609 1.252160886 1.304575174 1 18.91585396 -13.78083143 0.113466394 4.84E-10 1.497186364 0.183815342 0.218356271 256.0555574 2.009024573 59.54727456 2.405346418 1.66E-14 13.78083143 1.497186364 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)S(ph)DEEGK ddPTM_HeLa_A485_30min_R1 1 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGK 32 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 SCVEEPEPEPEAAEGDGDKKGNAEGS(1)S(1)DEEGK 92.967 0.00014373 150630000 118320 61901 24311 252400 58933 78175 160490 122920 41325 307580 TRUE FALSE FALSE 144639.8758 69139.78348 33304.65057 266187.9729 53065.42359 82268.12212 126200.0004 92773.67727 49618.54844 230905.9666 0.626401638 0.299428311 0.14423469 1.152798158 0.229813999 0.35628409 0.54654283 0.401781204 0.214886385 1 17.81694593 -10.63362392 2.999911573 1.044352572 0.442570505 0.268615945 0.276538587 148181210.2 152363553.6 51114330.29 0.072075385 2.32E-11 10.63362392 -0.601782066 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_A486_30min_R1 3 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAK 40 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 SCVEEPEPEPEAAEGDGDKKGNAEGS(1)S(1)DEEGKLVIDEPAK;SCVEEPEPEPEAAEGDGDKKGNAEGS(1)S(1)DEEGKLVIDEPAK;SCVEEPEPEPEAAEGDGDKKGNAEGS(1)S(1)DEEGKLVIDEPAK ;; 186.88 3.83E-22 2777950000 715501 480244 102985 1068513 291863 995079 1787200 1332406 359222 3133530 TRUE FALSE FALSE 665348.0748 442187.7164 142863.55 2487552.264 255254.821 872316.2702 1340023.657 1029046.24 390359.6522 2348873.692 0.283262602 0.188255213 0.060822151 1.059040455 0.108671157 0.371376406 0.57049626 0.438101991 0.166190142 1 21.16353771 -11.3949832 2.309518804 6.158754518 0.368688614 0.32425445 0.276656422 14782485.91 1265552.763 399993219.8 0.073128536 4.03E-12 11.3949832 -5.790065903 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)SDEEGKLVIDEPAK ddPTM_HeLa_A485_30min_R1 1 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAK 40 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 SCVEEPEPEPEAAEGDGDKKGNAEGS(0.5)S(0.5)DEEGKLVIDEPAK 116 5.21E-06 194890000 47522 32784 20630 109870 38127 44771 79306 62564 29953 148050 TRUE FALSE FALSE 58093.10495 36617.80362 28261.89549 115871.9199 34330.94201 47115.14033 62361.62523 47220.0809 35964.29235 111143.8597 0.52268389 0.329463128 0.254282113 1.042540004 0.308887438 0.423911321 0.561089253 0.424855508 0.323583259 1 16.76206872 -10.19273724 4.062365005 1.000258829 0.468203427 0.360028174 0.213683647 430510357.2 726254103.8 1501795.114 0.054650297 6.42E-11 10.19273724 -0.532055403 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)SDEEGKLVIDEPAK ddPTM_HeLa_A486_30min_R1 2 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAK 40 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 SCVEEPEPEPEAAEGDGDKKGNAEGS(0.806)S(0.194)DEEGKLVIDEPAK;SCVEEPEPEPEAAEGDGDKKGNAEGS(0.897)S(0.103)DEEGKLVIDEPAK ; 305.38 3.18E-95 3611100000 1299660 902490 201525 1629980 577240 1841480 3186100 2353990 633990 4746800 TRUE FALSE FALSE 1208560.545 830973.4056 279560.877 3794675.815 504837.1767 1614296.92 2388904.081 1818037.864 688944.7637 3558170.384 0.339657862 0.233539521 0.078568716 1.06646827 0.141881114 0.453687358 0.671385522 0.510947388 0.19362332 1 21.76270417 -14 0.224429261 3.931443281 0.351592833 0.276596416 0.280717868 215.1895725 2.154806894 287.0519883 0.514555823 1.00E-14 14 -3.579850447 SDADSGFLGLRPT(ph)SVDPALRR ddPTM_HeLa_A485_30min_R1 2 SDADSGFLGLRPTSVDPALRR 21 2 Q9NZM5 Q9NZM5 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein 1 0 SDADSGFLGLRPT(0.5)S(0.5)VDPALRR;SDADSGFLGLRPT(0.5)S(0.5)VDPALRR ; 171.3 7.99E-14 318480000 157484 216453 197240 154019 269530 207312 249276 282790 175338 225805 TRUE FALSE FALSE 192515.7725 241765.2955 270207.2838 162432.668 242694.6468 218166.5358 196016.1462 213435.3091 210526.7283 169515.9691 1.135679272 1.426209558 1.593993092 0.958214549 1.431691941 1.286996953 1.156328499 1.259086741 1.241928589 1 17.37106166 -11.40516657 0.176229964 0.569753858 1.369382898 0.214324252 0.166626451 68.95700553 1.534030404 12.2378193 0.622833311 3.93E-12 11.40516657 0.79962904 SDADSGFLGLRPT(ph)SVDPALRR ddPTM_HeLa_A486_30min_R1 1 SDADSGFLGLRPTSVDPALRR 21 2 Q9NZM5 Q9NZM5 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein 1 0 SDADSGFLGLRPT(0.5)S(0.5)VDPALRR 127.83 1.39E-06 114130000 131540 144860 125300 56820 189050 140950 167990 166280 131600 171380 TRUE FALSE FALSE 122319.7253 133380.766 173819.5157 132279.8315 165337.5862 123561.0221 125957.1252 128421.6739 143007.194 128465.3325 0.952161357 1.038262724 1.353046088 1.029692828 1.287021043 0.961823861 0.980475609 0.999660152 1.113196776 1 16.97101956 -6.305745957 24.99986548 1.009100298 1.1334199 0.208850229 0.117711645 746.8690641 421416.7136 0.041595315 0.036683756 4.95E-07 6.305745957 0.124319602 SDADSGFLGLRPTS(ph)VDPALR ddPTM_HeLa_A485_30min_R1 1 SDADSGFLGLRPTSVDPALR 20 1 Q9NZM5 Q9NZM5 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein 1 0 SDADS(0.004)GFLGLRPT(0.186)S(0.811)VDPALR 74.763 0.0018021 95924000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SDADSGFLGLRPTS(ph)VDPALR ddPTM_HeLa_A486_30min_R1 1 SDADSGFLGLRPTSVDPALR 20 1 Q9NZM5 Q9NZM5 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein 1 0 SDADSGFLGLRPT(0.237)S(0.762)VDPALR 81.974 0.00087989 121200000 105630 108770 93846 39022 129700 108580 116170 116920 99330 120610 TRUE FALSE FALSE 98225.88247 100150.6691 130185.6845 90845.18806 113431.8166 95184.50356 87103.03728 90299.86835 107940.0044 90408.47096 1.086467689 1.107757581 1.439972196 1.004830489 1.254659164 1.052827269 0.963438894 0.998798756 1.193914721 1 16.46417033 -6.374892571 6.688472723 1.035010292 1.179314757 0.237145658 0.122801982 0.369917054 19.37882991 0.042986517 0.03779592 4.22E-07 6.374892571 0.144304465 SDAEEDGGTVS(ph)QEEEDR ddPTM_HeLa_A485_30min_R1 2 SDAEEDGGTVSQEEEDR 17 0 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 SDAEEDGGT(0.033)VS(0.967)QEEEDR;SDAEEDGGT(0.037)VS(0.963)QEEEDR ; 290.57 2.91E-68 530460000 273810 202297 148967 291570 171161 145288 177849 203467 196046 535830 TRUE FALSE FALSE 334718.0899 225953.8744 204076.0923 307497.7308 154119.6099 152895.055 139850.1083 153566.3992 235390.634 402257.4422 0.832099185 0.56171459 0.507327077 0.764430185 0.383136752 0.380092545 0.347663197 0.381761487 0.585174093 1 18.61775959 -8.033235889 22.673471 1.000000004 0.51206171 0.453465672 0.157049096 1320.852151 901083.1443 0.160792878 0.041516522 9.26E-09 8.033235889 -0.487938294 SDAEEDGGTVS(ph)QEEEDR ddPTM_HeLa_A486_30min_R1 2 SDAEEDGGTVSQEEEDR 17 0 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 SDAEEDGGT(0.009)VS(0.991)QEEEDR;SDAEEDGGT(0.012)VS(0.988)QEEEDR ; 327.47 2.08E-91 442650000 505140 626310 497790 138394 562240 598170 510380 411830 695020 572170 TRUE FALSE FALSE 469732.2945 576678.9146 690547.6193 322188.226 491718.6165 524373.8671 382677.5258 318065.2992 755264.8932 428894.9078 1.095215369 1.344569274 1.610062527 0.751205529 1.146478094 1.222616211 0.892240777 0.741592622 1.760955608 1 18.71026466 -5.254943316 24.99713585 1.064508093 1.349411051 0.152871867 0.297591129 973.0350885 3744270.744 0.079508224 0.133656489 5.56E-06 5.254943316 0.284902959 SDAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A485_30min_R1 4 SDAEEDGGTVSQEEEDRKPK 20 2 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 SDAEEDGGT(0.039)VS(0.961)QEEEDRKPK;SDAEEDGGT(0.02)VS(0.98)QEEEDRKPK;SDAEEDGGT(0.032)VS(0.968)QEEEDRKPK;SDAEEDGGT(0.002)VS(0.998)QEEEDRKPK ;;; 238.7 1.84E-46 5420700000 2419220 1181350 621620 4384260 1486220 1629420 2738160 2853880 1391160 9846300 TRUE FALSE FALSE 2957367.143 1319498.606 851583.1058 4623761.022 1338246.718 1714733.912 2153129.747 2153961.455 1670353.052 7391798.618 0.400087624 0.178508462 0.115206481 0.625525838 0.181044802 0.231977899 0.29128631 0.291398828 0.225973831 1 22.81749402 -10.601846 2.84277384 1.053062342 0.280528788 0.713058046 0.136572792 43821023.76 44135689.35 17380859.31 0.03554859 2.50E-11 10.601846 -0.772533555 SDAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_A486_30min_R1 6 SDAEEDGGTVSQEEEDRKPK 20 2 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 SDAEEDGGT(0.029)VS(0.971)QEEEDRKPK;SDAEEDGGT(0.093)VS(0.907)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK;SDAEEDGGT(0.007)VS(0.993)QEEEDRKPK;SDAEEDGGTVS(1)QEEEDRKPK ;;;;; 314.76 3.70E-102 7721700000 4309350 4403180 1876278 2543630 4314400 6178360 7454660 5753860 4352410 8144380 TRUE FALSE FALSE 4007286.819 4054255.981 2602823.09 5921699.188 3773247.722 5416136.76 5589425.221 4443831.684 4729680.403 6104974.237 0.656397007 0.664090596 0.426344648 0.96997939 0.618061203 0.887167832 0.91555263 0.727903429 0.774725694 1 22.54155378 -5.264444076 24.99993095 0.826202316 0.590458737 0.474058078 0.124465246 241.3444845 2008059.614 0.033711072 0.052536824 5.44E-06 5.264444076 -0.235743578 SDAGLES(ph)DTAMK ddPTM_HeLa_A486_30min_R1 2 SDAGLESDTAMK 12 0 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 SDAGLES(1)DTAMK;SDAGLES(1)DTAMK ; 185.95 5.48E-13 257790000 227680 244361 144193 119091 280098 266564 347740 306775 218498 297094 TRUE FALSE FALSE 211720.8077 224996.9444 200028.3912 277249.8665 244965.497 233678.0439 260731.774 236929.0294 237437.5826 222699.7286 0.950700789 1.010315306 0.898197732 1.244949279 1.09998112 1.049296491 1.170777241 1.063894558 1.06617814 1 17.76474027 -5.239173678 24.99578129 1.102882511 0.958795677 0.484804542 0.068932253 683.9754005 767839.1597 0.018155357 0.031414014 5.77E-06 5.239173678 -0.144086833 SDATNYASHS(ph)PPVNR ddPTM_HeLa_A485_30min_R1 2 SDATNYASHSPPVNR 15 0 Q96FJ0;Q96FJ0-2 Q96FJ0 STAMBPL1 AMSH-like protease 1 0 SDATNYAS(0.009)HS(0.991)PPVNR;SDATNYAS(0.005)HS(0.995)PPVNR ; 100.59 0.00041007 662830000 457830 522220 561360 588050 733920 499500 607750 591330 526610 747990 TRUE FALSE FALSE 559672.704 583289.0863 769030.4241 620173.6825 660848.3479 525653.0476 477899.2476 446305.3903 632295.7966 561529.8587 0.996692687 1.038749903 1.369527216 1.104435807 1.176871252 0.93610881 0.851066493 0.794802598 1.126023464 1 19.09900321 -6.270861933 20.01784763 0.923116772 1.142863528 0.376917178 0.124547954 45.92789562 97569.73049 0.044262737 0.039782589 5.36E-07 6.270861933 0.219746756 SDATNYASHS(ph)PPVNR ddPTM_HeLa_A486_30min_R1 4 SDATNYASHSPPVNR 15 0 Q96FJ0;Q96FJ0-2 Q96FJ0 STAMBPL1 AMSH-like protease 1 0 SDATNYAS(0.001)HS(0.999)PPVNR;SDATNYAS(0.006)HS(0.994)PPVNR;SDATNYAS(0.003)HS(0.997)PPVNR;SDATNYASHS(1)PPVNR ;;; 121.21 4.28E-05 1407250000 547270 658260 461240 191149 669200 601660 663670 659500 544810 592870 TRUE FALSE FALSE 508909.1991 606097.0803 639844.4804 445004.5321 585262.696 527433.3064 497612.7464 509346.2468 592034.5695 444411.4931 1.145130599 1.363819545 1.439756825 1.001334437 1.316938705 1.18681293 1.119711696 1.146114029 1.33217655 1 18.7615366 -14 0.123049603 0.290286408 1.328413325 0.21351537 0.127655535 233.0890448 1.841628679 41.49375294 1.146224751 1.00E-14 14 1.038126917 SDDYMPMS(ph)PASVSAPK ddPTM_HeLa_A485_30min_R1 1 SDDYMPMSPASVSAPK 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SDDYMPMS(0.997)PAS(0.003)VSAPK 320.05 3.42E-102 0 163100 158590 100070 204940 220980 157110 231730 225260 126820 226830 TRUE FALSE FALSE 199381.0323 177135.721 137090.0573 216135.3533 198978.4553 165336.0367 182218.9924 170014.6318 152271.6107 170285.4555 1.170863546 1.04022813 0.805060285 1.269253165 1.168499416 0.970934577 1.070079602 0.99840959 0.894213838 1 17.37759569 -7.434748905 3.31481679 0.94571548 1.067030779 0.146510867 0.121032043 0.525863451 10.82751758 0.084177082 0.033749643 3.67E-08 7.434748905 0.121315299 SDEEDEDS(ph)DFGEEQR ddPTM_HeLa_A485_30min_R1 1 SDEEDEDSDFGEEQR 15 0 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 1 0 SDEEDEDS(1)DFGEEQR 277 3.63E-68 0 183240 184560 187020 185700 196140 187580 231000 227400 191290 258250 TRUE FALSE FALSE 224001.1058 206142.6865 256206.4806 195844.3208 176611.6129 197401.3987 181644.9629 171629.7935 229680.1484 193873.0277 1.155401081 1.063287085 1.321516889 1.010167959 0.910965362 1.018199391 0.936927457 0.885269062 1.184693668 1 17.56475258 -5.461570324 11.85491781 0.980442333 1.168100016 0.438808391 0.096948034 1.044805035 200.5673426 0.026307667 0.039000588 3.45E-06 5.461570324 0.187657683 SDEEDEDS(ph)DFGEEQR ddPTM_HeLa_A486_30min_R1 2 SDEEDEDSDFGEEQR 15 0 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 1 0 SDEEDEDS(1)DFGEEQR;SDEEDEDS(1)DFGEEQR ; 297.7 2.58E-67 463460000 656670 726440 541670 258156 746690 722390 804410 785180 730940 865440 TRUE FALSE FALSE 610640.824 668874.2488 751419.1304 601000.2145 653033.1776 633268.8665 603138.1098 606411.6544 794298.4677 648728.1909 0.941289176 1.031054698 1.158295787 0.926428392 1.006636041 0.976169797 0.929723909 0.934770005 1.224393327 1 19.30725461 -7.744157042 24.99915193 1.112196808 0.991380403 0.263139649 0.08295136 288.9348414 417951.9299 0.056241591 0.021145599 1.80E-08 7.744157042 -0.120816405 SDEGQLS(ph)PATR ddPTM_HeLa_A485_30min_R1 5 SDEGQLSPATR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 SDEGQLS(1)PATR;SDEGQLS(1)PATR;SDEGQLS(1)PATR;SDEGQLS(0.988)PAT(0.012)R;SDEGQLS(0.986)PAT(0.014)R ;;;; 219.97 7.75E-18 9580840000 3339830 3925950 4136400 4218480 5082760 3568790 4644110 4091610 3777620 5186820 TRUE FALSE FALSE 4082763.661 4385055.701 5666626.49 4448924.881 4576702.568 3755646.326 3651857.96 3088136.232 4535753.684 3893841.23 1.048518268 1.126151644 1.455279287 1.142554259 1.175369589 0.964509363 0.93785487 0.793082216 1.164853268 1 21.89276263 -6.233137258 3.525137968 0.954302374 1.202681979 0.407118024 0.130312995 0.233354719 6.162265469 0.046933688 0.044764104 5.85E-07 6.233137258 0.248379606 SDEGQLS(ph)PATR ddPTM_HeLa_A486_30min_R1 4 SDEGQLSPATR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 SDEGQLS(0.998)PAT(0.002)R;SDEGQLS(1)PATR;SDEGQLS(0.991)PAT(0.009)R;SDEGQLS(0.986)PAT(0.014)R ;;; 154.1 4.20E-07 12034530000 7424460 9216070 6924030 2906530 10073980 9042770 9334950 9539360 8370430 8898560 TRUE FALSE FALSE 6904043.694 8485755.049 9605199.848 6766548.728 8810407.492 7927164.978 6999246.775 7367455.971 9095985.612 6670302.656 1.035042044 1.272169418 1.439994606 1.014429041 1.320840739 1.188426581 1.049314722 1.104515994 1.363654107 1 22.66932079 -6.529810286 24.79565835 1.135336544 1.224164401 0.070863324 0.147235937 460.9290428 1648824.301 0.055212059 0.042866505 2.95E-07 6.529810286 0.088827857 SDELLGS(ph)DDS(ph)HDGESESNAK ddPTM_HeLa_A485_30min_R1 1 SDELLGSDDSHDGESESNAK 20 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2;A0A0U1RRA9;E9PH68;E7EWN5;Q3B891;A0A494C182;A0A0A0MSN1;H0Y8D8;C9IZW4 P38398 BRCA1 Breast cancer type 1 susceptibility protein 2 0 S(0.001)DELLGS(0.999)DDS(1)HDGESESNAK 84.68 0.0010428 317580000 268750 231960 193230 373750 336160 249770 472610 459680 255770 498570 TRUE FALSE FALSE 328532.5103 259085.7042 264713.818 394167.0161 302690.7301 262847.571 371633.0126 346942.7592 307100.6929 374285.6745 0.877758709 0.692213787 0.707250734 1.053118094 0.808715777 0.702264577 0.992912735 0.926946402 0.820498122 1 18.51378031 -4.863264086 0.033451278 1.613624295 2.72E-09 0.184504659 0.114184496 741.49394 4.775018032 93.75940418 138.9714964 1.37E-05 4.863264086 -1.613624293 SDELLGS(ph)DDS(ph)HDGESESNAK ddPTM_HeLa_A486_30min_R1 1 SDELLGSDDSHDGESESNAK 20 0 P38398;P38398-4;P38398-8;P38398-7;Q5YLB2;A0A0U1RRA9;E9PH68;E7EWN5;Q3B891;A0A494C182;A0A0A0MSN1;H0Y8D8;C9IZW4 P38398 BRCA1 Breast cancer type 1 susceptibility protein 2 0 S(0.004)DELLGS(0.996)DDS(0.998)HDGES(0.002)ESNAK 78.758 0.0025228 228470000 228310 272600 129780 94551 266850 277560 320270 325870 201230 351930 TRUE FALSE FALSE 212306.648 250998.1832 180034.2916 220119.5063 233379.1847 243317.4692 240135.0585 251676.5147 218672.7784 263804.4373 0.804788009 0.951455501 0.682453614 0.834404109 0.884667396 0.92234032 0.910276798 0.954026844 0.828920016 1 18.00910931 -5.864494319 3.056671128 0.918341528 0.817309876 0.317902201 0.072479028 0.330956492 6.197693318 0.023311645 0.027373293 1.37E-06 5.864494319 -0.101031653 SDEPLIDPKLLLK(ac)K ddPTM_HeLa_A485_30min_R1 1 SDEPLIDPKLLLKK 14 2 A0A0C4DGW7;Q5JRC9 A0A0C4DGW7 FAM47A Protein FAM47A 0 1 SDEPLIDPKLLLK(1)K 78.763 0.021434 44009000 128060 53336 25505 254040 50326 148220 201600 193820 61266 317150 FALSE TRUE FALSE 156546.5052 59573.18124 34940.36085 267917.5619 45315.36673 155980.57 158526.5131 146285.3411 73561.52423 238090.3417 0.657508843 0.250212507 0.146752534 1.125276901 0.190328454 0.655131867 0.665825047 0.614411068 0.308964756 1 17.86114957 -14 0.283047948 4.556379703 0.485268602 0.201500243 0.284303216 382.5999742 3.654603342 801.8842029 0.314718219 1.00E-14 14 -4.071111102 SDES(ph)GEEKNGDEDCQR ddPTM_HeLa_A485_30min_R1 2 SDESGEEKNGDEDCQR 16 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 S(0.005)DES(0.995)GEEKNGDEDCQR;SDES(1)GEEKNGDEDCQR ; 188.19 3.25E-18 148250000 226957 250098 307127 342150 398560 304738 345450 409680 337333 440470 TRUE FALSE FALSE 277442.8017 279344.7855 420746.0579 360840.7881 358877.967 320693.6105 271641.7854 309205.3376 405032.6389 330668.9352 0.839034975 0.844786902 1.272408784 1.091244897 1.085308986 0.969832894 0.821491699 0.935090372 1.22488869 1 18.33502799 -4.588920996 24.99988391 1.040699315 0.840453381 0.302741031 0.125716191 65.45716604 24777.56237 0.0342319 0.090569122 2.58E-05 4.588920996 -0.200245934 SDES(ph)GEEKNGDEDCQR ddPTM_HeLa_A486_30min_R1 1 SDESGEEKNGDEDCQR 16 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 SDES(1)GEEKNGDEDCQR 150.94 2.31E-08 269090000 112730 123230 99185 73441 142050 135360 167930 167270 106030 187120 TRUE FALSE FALSE 104828.2091 113464.806 137592.0883 170974.3595 124232.7644 118660.6594 125912.1378 129186.2725 115220.7658 140263.9341 0.74736396 0.808937855 0.980951299 1.218947413 0.885707115 0.845981258 0.897680068 0.921022737 0.821456824 1 17.09778457 -1.000134346 0.008972498 1.735423336 0.000103371 0.034878369 0.123474674 102863.9418 71.51415469 6051.770147 7892.489338 0.09996907 1.000134346 -1.735319966 SDES(ph)PKPGK ddPTM_HeLa_A485_30min_R1 1 SDESPKPGK 9 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.002)DES(0.998)PKPGK 50.95 0.024341 469790000 456870 145530 77549 991780 119410 520410 244110 312460 189210 771510 TRUE FALSE FALSE 558499.1553 162548.4676 106237.6022 1045958.43 107521.1211 547657.8629 191953.9043 235828.6951 227182.7115 579186.7556 0.964281641 0.28064949 0.183425469 1.80590875 0.18564154 0.945563512 0.331419706 0.407172113 0.392244314 1 19.14366909 -6.775682112 24.97047612 0.483306774 0.706910794 0.032281718 0.486063705 890.6806983 1561534.135 0.199384989 0.135142645 1.68E-07 6.775682112 0.22360402 SDGAPAEGK(ac)R ddPTM_HeLa_A485_30min_R1 2 SDGAPAEGKR 10 1 F8WES8;C9JXU6;F5GZF3;C9JCL9;C9JXG5;F8WCP5;Q13769 F8WES8 THOC5 THO complex subunit 5 homolog 0 1 ; SDGAPAEGK(1)R;SDGAPAEGK(1)R 204.34 5.43E-14 43002000 29899 38405 37434 33885 49216 37791 53446 52333 41446 55941 FALSE TRUE FALSE 36549.9294 42896.13067 51282.39436 35736.05175 44315.88223 39769.67832 42026.82549 39498.2497 49763.83203 41995.93822 0.870320582 1.021435227 1.221127484 0.850940669 1.055242105 0.946988685 1.000735482 0.940525474 1.184967741 1 15.35796218 -7.746868405 24.99993461 1.092483955 0.99394723 0.130258038 0.106803362 434.3602703 745255.2414 0.070588387 0.026425452 1.79E-08 7.746868405 -0.098536725 SDGAPAEGK(ac)R ddPTM_HeLa_A486_30min_R1 2 SDGAPAEGKR 10 1 F8WES8;C9JXU6;F5GZF3;C9JCL9;C9JXG5;F8WCP5;Q13769 F8WES8 THOC5 THO complex subunit 5 homolog 0 1 ; SDGAPAEGK(1)R;SDGAPAEGK(1)R 197.96 1.01E-13 48175000 40810 43452 32242 12605.7 48256 40493 45805 45752 39821 50036 FALSE TRUE FALSE 37949.42974 40008.70527 44726.96587 29346.70666 42203.28251 35497.38536 34344.10452 35335.26836 43272.71634 37506.65992 1.011805099 1.066709362 1.192507303 0.782439885 1.12522103 0.946428859 0.915680164 0.942106507 1.153734202 1 15.19485917 -5.215693764 24.99999254 0.980260701 1.087977377 0.180156 0.107042698 757.5391494 413994.2232 0.028042499 0.048570846 6.09E-06 5.215693764 0.107716676 SDGAPASDSKPGS(ph)SEAAPSSK ddPTM_HeLa_A486_30min_R1 2 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 SDGAPASDSKPGS(0.955)S(0.045)EAAPSSK;SDGAPASDSKPGS(0.983)S(0.017)EAAPSSK ; 277.38 5.90E-73 3238070000 1012300 834520 353684 588790 842890 1328780 1375140 1229060 916440 2299350 TRUE FALSE FALSE 941342.9975 768389.5959 490639.9168 1370732.876 737166.8766 1164848.634 1031065.427 949229.8682 995877.7571 1723577.794 0.546156374 0.4458108 0.284663633 0.795283439 0.427695738 0.675831771 0.598212295 0.550732245 0.577796814 1 20.71697499 -14 0.179850066 2.860083031 0.449218831 0.546216547 0.128106083 101.5389359 0.97691463 67.46010523 0.395178089 1.00E-14 14 -2.4108642 SDGAPASDSKPGSS(ph)EAAPSSK ddPTM_HeLa_A486_30min_R1 1 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 SDGAPASDSKPGS(0.356)S(0.644)EAAPSSK 219.22 8.19E-36 3644700000 372050 278260 125460 207890 294700 454670 498190 432640 327650 770230 TRUE FALSE FALSE 345971.2163 256209.6642 174041.4719 483978.4262 257735.978 398577.4381 373537.5927 334137.3165 356050.9658 577359.3946 0.599230253 0.443761142 0.301443907 0.838261975 0.446404753 0.690345462 0.646975863 0.578733662 0.616688616 1 19.13911012 -14 0.154967169 2.565563696 0.447062111 0.490673911 0.135857812 112.9233497 1.021516057 54.30043838 0.623524647 1.00E-14 14 -2.118501585 SDGAPASDSKPGSSEAAPSSK ddPTM_HeLa_A485_30min_R1 2 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 0 ; ; 235.25 9.85E-43 103338000 79558 50613 27398 100684 54520 63701 107949 95229 52576 190202 FALSE FALSE TRUE 97255.40263 56531.75008 37533.66033 106184.112 49091.79737 67036.28586 84884.81429 71873.93844 63127.52094 142788.1418 0.681116803 0.39591348 0.262862587 0.743647971 0.343808644 0.469480764 0.594480839 0.503360696 0.442106187 1 17.12351665 -10.50035412 2.632278216 1.024675689 0.488937899 0.540517456 0.140198137 7105536.661 7050943.796 1265599.95 0.035405287 3.16E-11 10.50035412 -0.53573779 SDGAPASDSKPGSSEAAPSSK ddPTM_HeLa_A486_30min_R1 1 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 0 0 81.356 0.00080695 5358400 4484.4 3928 1686 2499.3 3832.5 5131.4 6382.2 4528.3 4525.1 8152.7 FALSE FALSE TRUE 4170.066717 3616.730974 2338.864353 5818.496708 3351.792113 4498.34004 4785.306056 3497.304942 4917.339311 6111.210855 0.682363416 0.591819045 0.382717011 0.952102103 0.548466121 0.736079993 0.783037301 0.572276923 0.804642391 1 12.57724254 -14 0.139292822 2.163675848 0.545881191 0.350339134 0.145166612 156.405902 1.335943656 50.28278647 0.886631097 1.00E-14 14 -1.617794657 SDGEAKPEPSPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SDGEAKPEPSPSPR 14 1 P26358;K7EJL0;K7ERQ1;K7ENQ6 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 SDGEAKPEPS(0.017)PS(0.983)PR;SDGEAKPEPS(0.008)PS(0.992)PR ; 122.44 2.06E-05 782080000 1062400 886660 815380 1423780 1378970 987460 1509460 1367950 927800 2088770 TRUE FALSE FALSE 1298727.215 990347.1741 1117022.993 1501557.496 1241674.905 1039161.879 1186951.54 1032458.118 1114000.95 1568078.08 0.828228665 0.631567514 0.712351641 0.957578271 0.791845075 0.66269779 0.756946708 0.658422645 0.710424413 1 20.58056597 -9.951809927 4.205192167 1.000009535 0.744164642 0.409863795 0.091578416 58932475.78 130272740.7 8842.06754 0.024664235 1.12E-10 9.951809927 -0.255844893 SDGEAKPEPSPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SDGEAKPEPSPSPR 14 1 P26358;K7EJL0;K7ERQ1;K7ENQ6 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 SDGEAKPEPS(0.021)PS(0.979)PR;SDGEAKPEPS(0.021)PS(0.979)PR ; 101.53 0.00028626 1299200000 1093510 1235810 810980 497140 1338620 1189940 1376620 1279250 1036310 1266540 TRUE FALSE FALSE 1016860.596 1137879.915 1125013.175 1157367.044 1170717.797 1043137.301 1032175.116 987992.7008 1126138.185 949390.1402 1.071067154 1.198537742 1.184985105 1.219063686 1.233126138 1.098744612 1.087198057 1.040660377 1.186170087 1 19.85664154 -6.389745376 5.940886775 1.08348738 1.184326547 0.405154666 0.060024082 0.243980474 10.78403442 0.020964291 0.018391561 4.08E-07 6.389745376 0.100839168 SDGS(ph)LEDGDDVHR ddPTM_HeLa_A485_30min_R1 2 SDGSLEDGDDVHR 13 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 SDGS(1)LEDGDDVHR;SDGS(1)LEDGDDVHR ; 228.11 7.53E-28 2685900000 1297020 1170390 1068620 1518100 1357910 1205930 1738890 1359940 1241000 2509700 TRUE FALSE FALSE 1585537.624 1307256.929 1463947.007 1601029.959 1222711.712 1269070.63 1367361.946 1026412.583 1490057.317 1884077.978 0.841545649 0.693844387 0.777009776 0.849768416 0.648970864 0.673576489 0.725745942 0.544782432 0.790868178 1 20.84542725 -8.01841247 24.81049329 1.000000007 0.717821822 0.492846481 0.085731643 989.3846954 1333178.825 0.084205413 0.021741744 9.58E-09 8.01841247 -0.282178185 SDGS(ph)LEDGDDVHR ddPTM_HeLa_A486_30min_R1 3 SDGSLEDGDDVHR 13 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 SDGS(1)LEDGDDVHR;SDGS(1)LEDGDDVHR;SDGS(1)LEDGDDVHR ;; 292.95 1.54E-57 1783080000 1545200 1646810 1306260 498610 1917220 1721370 1872430 1748640 1695790 2099520 TRUE FALSE FALSE 1436889.459 1516310.778 1812078.855 1160789.278 1676744.39 1509004.871 1403928.209 1350512.845 1842782.443 1573786.526 0.913014208 0.963479324 1.151413374 0.737577339 1.065420476 0.958837076 0.892070294 0.858129627 1.170922747 1 20.58580843 -7.762112585 24.99998271 1.085461353 0.946287437 0.204579111 0.112564667 28.44821796 1056070.635 0.08635809 0.027397209 1.73E-08 7.762112585 -0.139173916 SDHTLTS(ph)PGGGGK ddPTM_HeLa_A485_30min_R1 3 SDHTLTSPGGGGK 13 0 C9J0Q5;Q9Y618;Q9Y618-4;C9J7T7;A0A384DVL6;H7C2R5 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SDHTLT(0.044)S(0.956)PGGGGK;SDHTLT(0.039)S(0.961)PGGGGK;SDHTLT(0.056)S(0.944)PGGGGK ;; 179.79 3.49E-17 2196890000 1692080 2253400 1835640 1071890 2866340 2084010 2730800 3021450 1978850 2001650 TRUE FALSE FALSE 2068477.358 2516915.528 2514719.623 1130444.637 2580957.125 2193125.541 2147342.271 2280434.65 2375987.044 1502675.493 1.376529642 1.67495613 1.6734948 0.75228793 1.717574512 1.459480475 1.429012639 1.517582912 1.581171088 1 20.51910206 -10.57883097 4.657713195 0.994933752 1.463842935 0.221063753 0.261672046 0.013664081 0.001235559 0.251481033 0.060513489 2.64E-11 10.57883097 0.468909182 SDHTLTS(ph)PGGGGK ddPTM_HeLa_A486_30min_R1 3 SDHTLTSPGGGGK 13 0 C9J0Q5;Q9Y618;Q9Y618-4;C9J7T7;A0A384DVL6;H7C2R5 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SDHTLT(0.066)S(0.934)PGGGGK;SDHTLT(0.047)S(0.953)PGGGGK;SDHTLT(0.048)S(0.952)PGGGGK ;; 156.17 6.18E-07 851570000 2655300 2660710 1850370 147191 2833170 2222280 2509720 2369490 2088550 1374960 TRUE FALSE FALSE 2469177.182 2449865.649 2566882.819 342668.0866 2477807.4 1948117.688 1881761.511 1830008.853 2269587.196 1030661.067 2.395721797 2.376984762 2.490520795 0.332474077 2.404095275 1.890163266 1.825781115 1.775568043 2.202069399 1 19.97513855 -1.000000025 0.04907413 1.76E-10 5.318363125 0.179728233 0.60390833 1047.455465 3.892270799 100.8106081 425.1608677 0.099999994 1.000000025 5.318363124 SDIS(ph)PLT(ph)PR ddPTM_HeLa_A485_30min_R1 2 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(0.011)DIS(0.989)PLT(1)PR;S(0.003)DIS(0.997)PLT(1)PR ; 93.162 0.0079174 916070000 1573150 1899080 1637040 1584440 2251690 1901070 2226610 2652300 1649710 2113620 TRUE FALSE FALSE 1923091.79 2121160.886 2242649.219 1670993.945 2027503.837 2000607.086 1750876.584 2001819.266 1980791.665 1586733.432 1.211981642 1.336809853 1.413374908 1.053103131 1.277784785 1.260833764 1.103447213 1.261597711 1.248345579 1 20.59762835 -14 0.158763522 0.124264975 1.306503751 0.363599748 0.097173003 149.6398253 1.369439138 41.41592797 0.428902653 1.00E-14 14 1.182238776 SDIS(ph)PLT(ph)PR ddPTM_HeLa_A486_30min_R1 2 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 SDIS(1)PLT(1)PR;SDIS(1)PLT(1)PR ; 114.86 0.00184 882840000 1407600 1521370 1190320 637040 1649360 1409050 1636200 1675600 1367040 1656010 TRUE FALSE FALSE 1308934.509 1400811.1 1651243.782 1483061.314 1442481.889 1235215.737 1226805.454 1294102.458 1485536.128 1241334.317 1.054457684 1.128472065 1.330216815 1.194731583 1.162041417 0.995070965 0.988295769 1.04250921 1.196725255 1 20.24346028 -6.154806612 5.524858376 1.044076973 1.183434838 0.366359278 0.084991442 0.265193708 11.49692067 0.030013113 0.030052355 7.00E-07 6.154806612 0.139357865 SDIS(ph)PLTPR ddPTM_HeLa_A485_30min_R1 6 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR ;;;;; 222.34 4.16E-12 4440610000 2335470 2738690 2697660 2360740 3601170 2747450 3427820 3669650 2504000 3360050 TRUE FALSE FALSE 2854987.244 3058955.972 3695636.693 2489701.248 3242624.87 2891302.234 2695438.254 2769662.584 3006529.832 2522451.372 1.131830439 1.212691751 1.465097299 0.987016549 1.285505404 1.146227145 1.068578877 1.098004352 1.191907945 1 21.26639503 -6.304039672 0.889884333 1.088910974 1.235333745 0.181802416 0.121801648 1.055807326 1.788111075 0.076835499 0.068255264 4.97E-07 6.304039672 0.146422771 SDIS(ph)PLTPR ddPTM_HeLa_A486_30min_R1 6 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR;SDIS(1)PLTPR ;;;;; 258.72 1.97E-21 4413510000 2561910 2860550 2371740 1133550 3266640 2613980 3163930 3144410 2388780 2938290 TRUE FALSE FALSE 2382333.339 2633869.6 3290141.245 2638961.686 2856907.551 2291493.725 2372281.249 2428496.485 2595841.374 2202523.059 1.081638319 1.195842009 1.493805584 1.198153942 1.297106761 1.040394885 1.077074421 1.10259753 1.178576253 1 21.07072569 -6.259667518 24.99579286 1.085975074 1.260413414 0.395966186 0.106875783 176.9517491 2496282.708 0.037257196 0.035492323 5.50E-07 6.259667518 0.17443834 SDISPLT(ph)PR ddPTM_HeLa_A485_30min_R1 5 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SDISPLT(1)PR;SDISPLT(1)PR;SDISPLT(1)PR;SDISPLT(1)PR;SDISPLT(1)PR ;;;; 166.69 4.36E-05 7444230000 3191930 4200910 3971600 3159750 4849040 3755480 4504540 4887580 3386160 4504110 TRUE FALSE FALSE 3901963.816 4692169.881 5440860.112 3332359.142 4366252.552 3952111.126 3542108.23 3688893.342 4065731.252 3381318.269 1.15397709 1.38767472 1.609094347 0.985520698 1.291287067 1.168807788 1.047552448 1.090963065 1.202410104 1 21.68915439 -5.273550086 24.99677848 1.123259748 1.383991333 0.458983954 0.134574816 671.9387189 1386895.562 0.037915589 0.05670957 5.33E-06 5.273550086 0.260731585 SDISPLT(ph)PR ddPTM_HeLa_A486_30min_R1 5 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SDISPLT(1)PR;SDISPLT(1)PR;SDISPLT(1)PR;SDISPLT(1)PR;SDISPLT(1)PR ;;;; 168.59 3.66E-05 6720450000 2492039 3013096 2304405 909332 3257457 2521597 2943071 2862780 2316505 2791123 TRUE FALSE FALSE 2317359.935 2774327.299 3196732.33 2116970.851 2848876.368 2210508 2206683.507 2210987.488 2517301.519 2092207.634 1.107614702 1.326028667 1.527923079 1.011835927 1.361660441 1.05654332 1.05471535 1.056772498 1.203179588 1 20.9965946 -6.275177201 24.26668427 1.076569989 1.270609784 0.32329188 0.139379523 671.5598334 1186248.825 0.048556061 0.043065278 5.31E-07 6.275177201 0.194039795 SDKGS(ph)PGEDGFVPSALGTR ddPTM_HeLa_A485_30min_R1 1 SDKGSPGEDGFVPSALGTR 19 1 G3V238;A0A494BZY7;Q5JPI9 G3V238 METTL10 Protein-lysine N-methyltransferase METTL10 1 0 S(0.006)DKGS(0.994)PGEDGFVPSALGTR 69.619 0.0027786 246400000 89755 99042 82927 126260 162190 116350 156410 162630 87478 196840 TRUE FALSE FALSE 109720.6901 110624.1003 113605.1482 133157.2641 146041.7941 122441.9061 122991.7257 122744.7375 105034.0322 147771.4106 0.742502827 0.748616393 0.768789766 0.901103018 0.988295324 0.828589953 0.832310697 0.830639276 0.710787234 1 17.17300765 -14 0.019030621 1.998121553 1.42E-07 0.239980555 0.083159715 6595.141061 9.483750853 661.8323823 372.3564545 1.00E-14 14 -1.998121411 SDKNQQGFS(ph)PK ddPTM_HeLa_A485_30min_R1 4 SDKNQQGFSPK 11 1 C9JKA9;Q9NS87-4;Q9NS87-2;Q9NS87;D6RCT7 C9JKA9 KIF15 Kinesin-like protein KIF15;Kinesin-like protein 1 0 SDKNQQGFS(1)PK;SDKNQQGFS(1)PK;SDKNQQGFS(1)PK;SDKNQQGFS(1)PK ;;; 143.05 5.18E-07 5103500000 5517600 4071570 2327850 9832100 6239700 5367300 10853700 10314200 4138440 13243600 TRUE FALSE FALSE 6744971.085 4547704.694 3189018.585 10369202.73 5618453.559 5648323.529 8534718.328 7784626.278 4968986.948 9942214.25 0.678417394 0.457413669 0.320755367 1.04294702 0.565110892 0.568115249 0.858432349 0.782987178 0.49978675 1 23.24513576 -13.99999996 0.084347413 2.082626804 0.337020716 0.228519603 0.198998802 355.4296296 2.101915299 71.61421969 5.88946491 1.00E-14 13.99999996 -1.745606088 SDKNQQGFS(ph)PK ddPTM_HeLa_A486_30min_R1 5 SDKNQQGFSPK 11 1 C9JKA9;Q9NS87-4;Q9NS87-2;Q9NS87;D6RCT7 C9JKA9 KIF15 Kinesin-like protein KIF15;Kinesin-like protein 1 0 SDKNQQGFS(1)PK;SDKNQQGFS(1)PK;SDKNQQGFS(1)PK;SDKNQQGFS(1)PK;SDKNQQGFS(1)PK ;;;; 141.85 5.53E-07 5420530000 8425590 6686230 2451049 5993310 5740330 8725550 13715280 11847530 5165480 16141050 TRUE FALSE FALSE 7834999.651 6156388.784 3400160.814 13952728.57 5020324.285 7649080.356 10283571.88 9150106.049 5613227.965 12099226.02 0.647562054 0.508825009 0.281023002 1.153191828 0.414929375 0.63219584 0.84993634 0.756255486 0.463932813 1 23.52841143 -14 0.134818104 2.146394881 0.506723104 0.17214818 0.23532301 256.331763 2.14728344 80.27906131 1.601145686 1.00E-14 14 -1.639671777 SDKQYAENYTRPS(ph)SR ddPTM_HeLa_A486_30min_R1 2 SDKQYAENYTRPSSR 15 2 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 SDKQYAENYT(0.003)RPS(0.564)S(0.433)R;SDKQYAENYT(0.005)RPS(0.548)S(0.446)R ; 128.38 9.81E-06 1585070000 1187480 1142720 813470 446210 1385070 1056750 1435580 1374970 948020 1329470 TRUE FALSE FALSE 1104243.784 1052166.705 1128467.369 1038799.43 1211341.605 926378.9292 1076382.7 1061919.346 1030195.137 996562.0586 1.108053206 1.055796472 1.132360358 1.042383082 1.215520494 0.929574753 1.080096007 1.065582757 1.033749106 1 19.92660012 -6.266244641 24.99997941 1.029542922 1.10516004 0.362428129 0.058347211 531.6899552 2766174.031 0.019509587 0.017740873 5.42E-07 6.266244641 0.075617118 SDKQYAENYTRPSS(ph)R ddPTM_HeLa_A485_30min_R1 4 SDKQYAENYTRPSSR 15 2 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 SDKQYAENYTRPS(0.106)S(0.894)R;SDKQYAENYT(0.015)RPS(0.226)S(0.759)R;SDKQYAENYT(0.009)RPS(0.177)S(0.814)R;SDKQYAENYT(0.009)RPS(0.175)S(0.816)R ;;; 135.81 4.25E-06 4188270000 1404300 1821230 1364520 1371140 2347770 1943450 2723670 2906140 1598890 2134540 TRUE FALSE FALSE 1716681.69 2034207.006 1869312.73 1446041.906 2114017.775 2045206.037 2141735.654 2193404.608 1919772.557 1602438.461 1.071293364 1.269444696 1.166542601 0.902400898 1.319250521 1.27630863 1.336547834 1.368791789 1.198032002 1 20.61183752 SDKQYAENYTRPSS(ph)R ddPTM_HeLa_A486_30min_R1 2 SDKQYAENYTRPSSR 15 2 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 SDKQYAENYT(0.004)RPS(0.123)S(0.874)R;SDKQYAENYT(0.001)RPS(0.155)S(0.844)R ; 134.32 5.36E-06 1440680000 922960 771200 573830 378570 954580 793020 1098140 1154820 650980 1047750 TRUE FALSE FALSE 858265.2702 710087.3033 796032.3437 881330.0919 834847.6753 695185.2552 823373.7571 891892.6955 707407.4705 785386.5803 1.092793398 0.904124569 1.013554807 1.122160875 1.062976751 0.885150412 1.048367489 1.135609798 0.90071245 1 19.58304342 -7.795529893 24.99998377 0.950356337 1.027685147 0.137563617 0.081974288 469.1431772 344030.8069 0.079869399 0.020626146 1.60E-08 7.795529893 0.07732881 SDKS(ph)PDLAPTPAPQS(ph)TPR ddPTM_HeLa_A485_30min_R1 1 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 2 0 S(0.156)DKS(0.844)PDLAPT(0.26)PAPQS(0.397)T(0.344)PR 63.906 0.0012473 0 166170 111680 77322 385660 190790 156310 250930 218360 107330 500370 TRUE FALSE FALSE 203133.9432 124740.0045 105926.6254 406727.6293 171794.2777 164494.1499 197316.7556 164806.8676 128870.1465 375636.9676 0.540771971 0.332075954 0.281992015 1.082767843 0.457341243 0.437907246 0.525285775 0.438739746 0.34307099 1 18.51897952 -10.29835793 3.296989309 1.002442419 0.496352004 0.338483433 0.212457651 158044771.2 224049717.1 3823228.946 0.054522197 5.03E-11 10.29835793 -0.506090415 SDKS(ph)PDLAPTPAPQSTPR ddPTM_HeLa_A485_30min_R1 7 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 0 SDKS(1)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;S(0.028)DKS(0.972)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;S(0.01)DKS(0.99)PDLAPTPAPQSTPR ;;;;;; 241.98 1.76E-45 41835320000 6761405 5922611 4262473 10599968 8401034 6953892 11830013 11013794 5492693 14030830 TRUE FALSE FALSE 8265456.216 6615208.837 5839339.139 11179017.41 7564597.557 7317987.032 9302434.08 8312643.753 6595026.103 10533202.3 0.784704972 0.628033968 0.554374536 1.061312324 0.71816693 0.694754247 0.883153462 0.789184857 0.626117862 1 23.32844077 -11.57013694 2.133457655 5.091807423 0.751423233 0.22985021 0.137836728 7235407.044 242135.5878 144598055.8 0.035146442 2.69E-12 11.57013694 -4.34038419 SDKS(ph)PDLAPTPAPQSTPR ddPTM_HeLa_A486_30min_R1 7 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 0 SDKS(1)PDLAPTPAPQSTPR;S(0.001)DKS(0.999)PDLAPTPAPQSTPR;S(0.174)DKS(0.825)PDLAPT(0.001)PAPQSTPR;SDKS(1)PDLAPTPAPQSTPR;S(0.087)DKS(0.913)PDLAPTPAPQSTPR;S(0.004)DKS(0.996)PDLAPTPAPQSTPR;SDKS(1)PDLAPTPAPQSTPR ;;;;;; 260.44 1.01E-56 25053040000 7686400 7369930 3780688 4268637 6718740 8630360 11206220 10457000 6104954 12874160 TRUE FALSE FALSE 7147623.053 6785909.906 5244671.644 9937602.661 5876012.979 7565633.93 8402305.229 8076169.375 6634136.328 9650386.539 0.740656659 0.703174933 0.54346752 1.029762137 0.608888873 0.783972113 0.87067033 0.836875222 0.687447731 1 23.2021553 -14 0.115308095 1.755993124 0.635114199 0.251563523 0.129333005 225.5155434 1.703566719 40.25542847 1.379688347 1.00E-14 14 -1.120878926 SDKSPDLAPT(ph)PAPQSTPR ddPTM_HeLa_A486_30min_R1 1 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-4;Q9BY44-3;Q9BY44;Q9BY44-2 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 0 SDKS(0.254)PDLAPT(0.708)PAPQS(0.033)T(0.004)PR 240.01 5.86E-45 2228900000 1363900 1380500 641080 789560 1245900 1518500 2274600 2062800 1011100 2393600 TRUE FALSE FALSE 1268297.653 1271104.152 889323.3447 1838135.582 1089627.604 1331162.909 1705471.022 1593145.471 1098742.962 1794226.98 0.706876926 0.708441109 0.495658216 1.024472156 0.60729641 0.741914442 0.95053248 0.887928611 0.612376792 1 20.77493098 -13.99994247 0.035896318 2.214816671 1.57E-05 0.210394696 0.153697289 1606.389176 4.312515659 226.0674319 76.68297102 1.00E-14 13.99994247 -2.214800976 SDLDYIRS(ph)PLPFQNR ddPTM_HeLa_A485_30min_R1 1 SDLDYIRSPLPFQNR 15 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;H7BYL6 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 1 0 SDLDYIRS(1)PLPFQNR 84.035 0.0011893 99841000 129900 136290 153080 147610 177450 111850 140590 121750 126770 188510 TRUE FALSE FALSE 158795.8069 152227.9299 209710.6622 155673.5605 159782.4549 117706.293 110551.798 91890.6216 152211.5762 141517.9263 1.122089696 1.075679484 1.481866416 1.100027146 1.129061591 0.831741223 0.781185825 0.649321425 1.075563925 1 17.11062529 -6.153882533 2.762749 0.837453104 1.203198687 0.51087705 0.152951642 0.215000524 3.186774926 0.054918434 0.054558743 7.02E-07 6.153882533 0.365745582 SDLDYIRS(ph)PLPFQNR ddPTM_HeLa_A486_30min_R1 2 SDLDYIRSPLPFQNR 15 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;H7BYL6 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 1 0 SDLDYIRS(1)PLPFQNR;SDLDYIRS(1)PLPFQNR ; 163.79 2.95E-12 299140000 491240 671610 549350 207844 714250 605330 600730 626070 609260 569880 TRUE FALSE FALSE 456806.6128 618389.1776 762073.0321 483871.3359 624662.1049 530650.5391 450421.0001 483527.528 662071.1474 427178.3387 1.069358091 1.447613611 1.783969277 1.132715056 1.462298175 1.242222489 1.054409738 1.131910222 1.549870598 1 18.70447897 -6.416971579 5.392082587 1.18904694 1.390787118 0.141535191 0.228142007 0.464005553 19.52692229 0.082233419 0.071792425 3.83E-07 6.416971579 0.201740178 SDPDGGDS(ph)PLPASGGPLTCK ddPTM_HeLa_A486_30min_R1 1 SDPDGGDSPLPASGGPLTCK 20 0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 SDPDGGDS(1)PLPASGGPLTCK 216.53 9.55E-29 0 47784 56773 31328 21235 53593 64965 72667 69740 48696 60865 TRUE FALSE FALSE 44434.58836 52274.10072 43459.04059 49436.15316 46870.86621 56950.27882 54484.94801 53861.72441 52917.00849 45624.00784 0.973929965 1.14575863 0.952547631 1.083555687 1.027328997 1.248252434 1.194216611 1.180556619 1.159850066 1 15.47750557 -6.242152896 24.71534289 1.170212527 1.040623582 0.363823415 0.078186838 695.5253372 891305.5979 0.024148627 0.024111723 5.73E-07 6.242152896 -0.129588945 SDPES(ph)PIKK ddPTM_HeLa_A485_30min_R1 4 SDPESPIKK 9 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 SDPES(1)PIKK;S(0.001)DPES(0.999)PIKK;S(0.001)DPES(0.999)PIKK;SDPES(1)PIKK ;;; 106.67 0.00064628 3486820000 5502880 3721480 2152450 9027860 5448800 4792310 9025640 8028700 3510670 11954400 TRUE FALSE FALSE 6726976.671 4156674.713 2948730.826 9521029.132 4906298.34 5043227.941 7097238.281 6059648.736 4215229.267 8974388.084 0.749574969 0.463170823 0.328571798 1.060911233 0.546700042 0.561957862 0.790832558 0.675215812 0.469695452 1 23.09738214 -11.15406322 2.379519719 1.864391563 0.628448583 0.245580307 0.195908272 20628682.29 4638595.718 96286450.09 0.048626529 7.01E-12 11.15406322 -1.23594298 SDPES(ph)PIKK ddPTM_HeLa_A486_30min_R1 5 SDPESPIKK 9 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.007)DPES(0.993)PIKK;SDPES(1)PIKK;SDPES(1)PIKK;SDPES(1)PIKK;SDPES(1)PIKK ;;;; 105.25 0.00068609 4273040000 8628530 7209770 2660650 5076270 6246620 9734300 12945900 11620300 5766800 14952900 TRUE FALSE FALSE 8023714.605 6638441.568 3690924.935 11817813.1 5463110.672 8533381.037 9706698.892 8974611.359 6266670.867 11208596.51 0.715853639 0.592263408 0.329294121 1.05435262 0.487403634 0.76132467 0.866004846 0.800690019 0.559095054 1 23.41810231 -14 0.086876434 1.96608886 0.426283974 0.196967745 0.193982782 362.2528054 2.195981559 66.20850702 5.065028194 1.00E-14 14 -1.539804886 SDPGPPTETPS(ph)QRPSPLKR ddPTM_HeLa_A486_30min_R1 1 SDPGPPTETPSQRPSPLKR 19 2 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 SDPGPPTET(0.001)PS(0.766)QRPS(0.233)PLKR 153.21 4.62E-09 360290000 144890 154280 79332 75009 144690 158050 190410 179510 129730 186430 TRUE FALSE FALSE 134733.9592 142054.2909 110051.475 174624.7427 126541.631 138551.3979 142767.404 138639.4917 140975.1009 139746.7145 0.964129709 1.016512563 0.787506707 1.249580309 0.90550702 0.991446549 1.02161546 0.992076931 1.008790091 1 17.09245484 SDPVDPDKEPEKEDVSASGPS(ph)PEATQLAK ddPTM_HeLa_A486_30min_R1 1 SDPVDPDKEPEKEDVSASGPSPEATQLAK 29 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SDPVDPDKEPEKEDVSAS(0.017)GPS(0.983)PEATQLAK 141.9 1.86E-09 369790000 205320 167620 55623 150650 139840 260670 366150 328900 151070 504890 TRUE FALSE FALSE 190928.1283 154337.1807 77161.71524 350720.8134 122299.9632 228511.1857 274535.3973 254016.6498 164164.8692 378462.2577 0.504483933 0.407800719 0.203882193 0.926699575 0.323149695 0.603788571 0.725397029 0.671180929 0.433768139 1 18.52978991 -14 0.111223925 2.4508467 0.282439409 0.356362899 0.195002184 183.2031904 1.34847082 60.78270688 2.335403223 1.00E-14 14 -2.168407292 SDPVVSYR ddPTM_HeLa_A485_30min_R1 1 SDPVVSYR 8 0 P13639 P13639 EEF2 Elongation factor 2 0 0 143.85 0.00074683 28502000 33352 32024 37058 39820 51801 33334 52019 50275 42363 77314 FALSE FALSE TRUE 40771.03734 35768.92823 50767.29631 41995.26577 46643.51056 35079.3167 40904.71569 37944.97742 50864.86552 58041.04266 0.702451842 0.616269567 0.874679261 0.723544303 0.803629784 0.604388121 0.704755012 0.653761126 0.876360299 1 15.82478582 -7.964886245 4.213120399 0.998933248 0.7132556 0.60096632 0.077336728 0.119894294 4.886167738 0.074944909 0.019672329 1.08E-08 7.964886245 -0.285677648 SDQDS(ph)DS(ph)DQPSR ddPTM_HeLa_A485_30min_R1 1 SDQDSDSDQPSR 12 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 SDQDS(1)DS(1)DQPSR 219.53 1.26E-22 170480000 257590 331770 222090 368060 283880 296960 356340 412040 282440 453380 TRUE FALSE FALSE 314890.0068 370567.6155 304250.3329 388166.1858 255615.9104 312508.3664 280205.048 310986.5439 339123.1173 340360.7098 0.92516556 1.088749685 0.893905566 1.14045533 0.751014741 0.918168159 0.823259089 0.913696954 0.99636388 1 18.37670498 -5.758204432 24.99999751 0.893131644 1.009105944 0.24296424 0.095979091 116.3089383 898840.5099 0.027332979 0.033822705 1.75E-06 5.758204432 0.1159743 SDQDS(ph)DS(ph)DQPSR ddPTM_HeLa_A486_30min_R1 2 SDQDSDSDQPSR 12 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 SDQDS(1)DS(1)DQPSR;SDQDS(1)DS(1)DQPSR ; 226.7 6.31E-23 326670000 771270 614200 573090 291090 645670 895970 787290 736320 754240 1007340 TRUE FALSE FALSE 717207.9558 565528.5551 795005.7959 677672.2309 564684.048 785434.331 590301.7149 568676.0098 819618.1305 755095.5073 0.94982416 0.748949702 1.052854623 0.897465585 0.747831291 1.04017879 0.781757684 0.753117989 1.085449619 1 19.52629961 -7.778417707 24.99995819 1.042724917 0.87283256 0.274096224 0.111443513 364.0257586 535999.2414 0.103097576 0.026896961 1.67E-08 7.778417707 -0.169892357 SDQDS(ph)DS(ph)DQPSRK ddPTM_HeLa_A485_30min_R1 1 SDQDSDSDQPSRK 13 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 S(0.475)DQDS(0.525)DS(1)DQPSRK 188.19 9.63E-16 0 238250 234130 107380 463500 158430 259730 309260 392790 225390 516370 TRUE FALSE FALSE 291247.8905 261509.4668 147104.3305 488819.8314 142656.1529 273329.0612 243184.0746 296457.6366 270623.7056 387648.4621 0.751319608 0.67460468 0.37947869 1.260987413 0.368003918 0.705095177 0.627331457 0.764758965 0.698116289 1 18.56438942 -8.851749644 0.969173268 1.002425999 0.684194002 0.137110543 0.232260953 10.10503274 9.815178004 0.284181224 0.068777854 1.41E-09 8.851749644 -0.318231997 SDQDS(ph)DSDQPSRK ddPTM_HeLa_A485_30min_R1 2 SDQDSDSDQPSRK 13 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 S(0.001)DQDS(0.997)DS(0.003)DQPSRK;S(0.004)DQDS(0.994)DS(0.002)DQPSRK ; 97.214 0.00060806 1199310000 938430 992400 545120 1571720 876510 1186310 1270700 1944990 1132350 1756800 TRUE FALSE FALSE 1147180.516 1108452.547 746782.5723 1657579.084 789241.5868 1248423.357 999204.5643 1467978.153 1359602.258 1318862.092 0.869825984 0.840461299 0.566232495 1.256825179 0.598426167 0.946591281 0.757626268 1.11306418 1.030890392 1 20.33086228 -7.264401523 24.91516207 1.053982971 0.835250093 0.224427095 0.182418364 366.2913622 3080905.43 0.089175692 0.045770237 5.44E-08 7.264401523 -0.218732878 SDQDS(ph)DSDQPSRK ddPTM_HeLa_A486_30min_R1 1 SDQDSDSDQPSRK 13 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 SDQDS(0.999)DSDQPSRK 109.04 0.00020284 349070000 303830 141150 253440 63089 149760 537410 244160 263930 378060 327790 TRUE FALSE FALSE 282533.086 129964.7599 351578.7554 146874.3803 130975.7043 471109.8182 183068.5855 203838.9006 410830.5452 245709.2504 1.149867518 0.528937188 1.430873094 0.597756821 0.533051581 1.917346691 0.745061837 0.829593921 1.672019041 1 17.90659265 SDS(ph)DLLTCSPTEDATMGSR ddPTM_HeLa_A486_30min_R1 1 SDSDLLTCSPTEDATMGSR 19 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.01)DS(0.99)DLLTCSPTEDATMGSR 232.78 9.57E-36 122710000 15448 34193 23988 11311 30949 25562 37004 33451 25975 48129 TRUE FALSE FALSE 14365.17497 31483.42215 33276.79602 26332.57963 27067.08783 22408.42034 27745.20781 25834.93753 28226.53391 36077.18513 0.39817893 0.872668476 0.922377838 0.729895626 0.750254981 0.62112441 0.769051347 0.716101809 0.782392911 1 15.13879916 -8.19743016 3.258220729 0.999985319 0.733693859 0.272402622 0.134931895 1.646912152 25.07880555 0.128467122 0.034079474 6.35E-09 8.19743016 -0.266291461 SDS(ph)DSSTLAK ddPTM_HeLa_A485_30min_R1 2 SDSDSSTLAK 10 0 Q6AWC2-7;Q6AWC2-3;Q6AWC2-2;Q6AWC2-4;Q6AWC2;Q6AWC2-6 Q6AWC2-7 WWC2 Protein WWC2 1 0 SDS(0.994)DS(0.006)STLAK;SDS(0.995)DS(0.005)STLAK ; 223.92 4.43E-17 1086520000 1631220 1042040 826810 2416800 1841920 1198780 1941080 1519980 1449760 2967700 TRUE FALSE FALSE 1994079.261 1163897.513 1132681.425 2548823.664 1658531.977 1261546.267 1526352.401 1147202.522 1740713.534 2227907.006 0.895046003 0.522417457 0.508406061 1.144044009 0.744435011 0.566247273 0.685105975 0.514923881 0.781322348 1 21.08725758 -8.016826045 23.70119705 1.000000017 0.69402434 0.189113898 0.189170612 918.6547805 1294020.512 0.186542056 0.048164952 9.62E-09 8.016826045 -0.305975677 SDS(ph)DSSTLAK ddPTM_HeLa_A486_30min_R1 2 SDSDSSTLAK 10 0 Q6AWC2-7;Q6AWC2-3;Q6AWC2-2;Q6AWC2-4;Q6AWC2;Q6AWC2-6 Q6AWC2-7 WWC2 Protein WWC2 1 0 SDS(0.999)DS(0.001)STLAK;SDS(0.947)DS(0.036)S(0.015)T(0.001)LAK ; 207.44 5.02E-14 1748370000 1922220 2099380 1035800 1065140 1946110 2730100 3175900 2841800 1722500 2631000 TRUE FALSE FALSE 1787482.304 1933017.483 1436889.5 2479699.749 1702010.737 2393288.02 2381256.229 2194784.176 1871807.687 1972180.475 0.906348241 0.980142288 0.728579112 1.257339164 0.863009627 1.213523838 1.207423083 1.112871871 0.949105678 1 20.91136015 -5.259539534 24.9999834 1.091943673 0.882535129 0.359654259 0.130757307 188.58223 2481529.16 0.035325983 0.057383919 5.50E-06 5.259539534 -0.209408545 SDS(ph)DSSTLSK ddPTM_HeLa_A485_30min_R1 2 SDSDSSTLSK 10 0 H3BLZ3;Q8IX03-2;H0YAU4;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 SDS(0.995)DS(0.005)STLSK;SDS(0.735)DS(0.063)S(0.048)T(0.154)LSK ; 227.14 3.00E-17 1609720000 2064120 1597750 1274270 2956700 2539400 1800230 2861200 2396900 1868740 3713500 TRUE FALSE FALSE 2523276.373 1784592.964 1745675.5 3118217.034 2286568.42 1894487.259 2249881.246 1809056.517 2243778.977 2787792.792 0.905116184 0.640145483 0.626185527 1.118525395 0.820207451 0.679565305 0.807047515 0.648920724 0.80485859 1 21.4106919 -11.43968253 1.824326861 2.400119778 0.779185639 0.171117991 0.142745399 5436827.626 440725.8757 31352363.17 0.03673457 3.63E-12 11.43968253 -1.620934139 SDS(ph)DSSTLSK ddPTM_HeLa_A486_30min_R1 3 SDSDSSTLSK 10 0 H3BLZ3;Q8IX03-2;H0YAU4;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 SDS(0.673)DS(0.327)STLSK;SDS(0.998)DS(0.001)S(0.001)TLSK;SDS(0.983)DS(0.016)S(0.001)TLSK ;; 242.3 5.65E-21 3214630000 4727100 4814000 2815200 2696560 4690800 6293000 7626000 6743900 4057000 6386600 TRUE FALSE FALSE 4395754.701 4432521.108 3905320.834 6277727.957 4102436.124 5516633.643 5717894.14 5208461.188 4408664.027 4787353.79 0.918201347 0.925881249 0.815757724 1.311314816 0.856931888 1.152334648 1.194374678 1.087962456 0.920897895 1 22.190797 -5.217880818 24.99998038 1.077627468 0.890540199 0.315973971 0.126819176 558.3080441 320434.27 0.033286492 0.05765351 6.06E-06 5.217880818 -0.187087269 SDS(ph)DTEGLLFSR ddPTM_HeLa_A485_30min_R1 2 SDSDTEGLLFSR 12 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 SDS(0.956)DT(0.044)EGLLFSR;SDS(0.991)DT(0.009)EGLLFSR ; 220.37 5.68E-23 153256000 205834 198759 168766 252100 215896 178190 226370 201240 192213 347930 TRUE FALSE FALSE 251621.0632 222002.1361 231199.5663 265871.5846 194400.6362 187519.7529 178004.2002 151885.5745 230788.386 261197.4542 0.963336584 0.849939892 0.885152449 1.017895008 0.744266964 0.717923356 0.681492861 0.581497147 0.883578237 1 17.99478131 -5.784653164 23.90711275 0.740359317 0.92029025 0.298203688 0.116064446 151.520618 156044.9553 0.034757377 0.039441172 1.64E-06 5.784653164 0.179930933 SDS(ph)DTEGLLFSR ddPTM_HeLa_A486_30min_R1 2 SDSDTEGLLFSR 12 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 SDS(0.992)DT(0.007)EGLLFSR;S(0.001)DS(0.997)DT(0.002)EGLLFSR ; 165.51 2.31E-10 192774000 123763 152395 110803 51354 135356 152553 154795 139028 126938 154386 TRUE FALSE FALSE 115087.8528 140318.6652 153708.889 119554.7073 118378.3883 133732.5619 116063.6537 107374.3594 137941.088 115726.7407 0.994479341 1.212499931 1.328205461 1.033077632 1.022913007 1.155589115 1.002911281 0.927826695 1.19195518 1 16.82036274 -5.343092727 24.99999847 1.046335494 1.181814743 0.246498798 0.104598899 127.5184379 39041.17233 0.029430074 0.043651863 4.54E-06 5.343092727 0.135479249 SDS(ph)DYDLSPK ddPTM_HeLa_A485_30min_R1 2 SDSDYDLSPK 10 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q07343-3;Q07343;E9PMG3;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D;PDE4B "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B" 1 0 S(0.001)DS(0.999)DYDLSPK;SDS(1)DYDLSPK ; 199.82 9.79E-14 2352630000 2237550 1758510 1164660 4432440 2607870 1895550 3860760 3190970 1679290 4859890 TRUE FALSE FALSE 2735285.278 1964152.447 1595516.2 4674572.974 2348221.306 1994798.067 3035877.086 2408379.604 2016308.1 3648408.863 0.749720051 0.538358644 0.437318365 1.281263463 0.643628879 0.546758366 0.832109887 0.660117792 0.552654095 1 21.79883598 -10.80753636 2.792988582 1.088145902 0.69603953 0.143886459 0.224179659 332026216.4 252623309.2 198106439.9 0.056746851 1.56E-11 10.80753636 -0.392106372 SDS(ph)DYDLSPK ddPTM_HeLa_A486_30min_R1 2 SDSDYDLSPK 10 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q07343-3;Q07343;E9PMG3;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D;PDE4B "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B" 1 0 SDS(0.984)DYDLS(0.016)PK;S(0.013)DS(0.987)DYDLSPK ; 187.76 1.56E-14 1332100000 742550 731800 335250 408910 572060 806350 1055140 945360 501670 1164810 TRUE FALSE FALSE 690501.0795 673809.5028 465067.7783 951963.1452 500306.9006 706870.7354 791132.8119 730122.1651 545155.1595 873133.9944 0.790830599 0.771713743 0.532641933 1.090282994 0.573001285 0.809578759 0.90608408 0.836208611 0.624365977 1 19.73584355 -10.64389061 2.688807902 1.0248624 0.774224569 0.162310147 0.156193613 39077410.8 35101114.34 6739043.862 0.038040372 2.27E-11 10.64389061 -0.250637831 SDS(ph)EDICLFTK ddPTM_HeLa_A485_30min_R1 1 SDSEDICLFTK 11 0 O76021;J3QSV6;I3L234;I3L3C4;I3L3U9 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 S(0.003)DS(0.997)EDICLFTK 88.552 0.0030013 26519000 45732 38515 34498 62699 47652 34338 55849 39320 33198 83161 TRUE FALSE FALSE 55904.92563 43018.99421 47260.24578 66124.08761 42907.59956 36135.88458 43916.40491 29676.70835 39860.53409 62430.49316 0.895474676 0.689070229 0.757005806 1.059163307 0.68728593 0.578817862 0.703444786 0.475355981 0.638478603 1 15.92996324 -5.97744973 24.96548322 0.64628862 0.837166762 0.20571581 0.155964892 319.5632634 353787.8748 0.046807886 0.053071883 1.05E-06 5.97744973 0.190878142 SDS(ph)FENPVLQQHFR ddPTM_HeLa_A485_30min_R1 4 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 S(0.001)DS(0.999)FENPVLQQHFR;S(0.021)DS(0.979)FENPVLQQHFR;S(0.001)DS(0.999)FENPVLQQHFR;S(0.03)DS(0.97)FENPVLQQHFR ;;; 229.93 2.31E-28 541814000 324479 435542 440320 382268 570492 474508 441271 500721 427818 587501 TRUE FALSE FALSE 396658.2341 486474.8482 603212.6912 403150.3329 513691.8134 499352.5052 346989.846 377918.3896 513677.1484 441047.8129 0.899354271 1.102997983 1.367680949 0.914073987 1.164707767 1.132195854 0.78673975 0.856864899 1.164674517 1 18.75057554 -6.726463212 24.99932513 0.940141611 1.10420431 0.172826709 0.153767339 288.2938314 206058.5237 0.058834813 0.045571239 1.88E-07 6.726463212 0.164062699 SDS(ph)FENPVLQQHFR ddPTM_HeLa_A486_30min_R1 2 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 S(0.003)DS(0.997)FENPVLQQHFR;S(0.027)DS(0.973)FENPVLQQHFR ; 215.15 1.20E-23 458000000 332190 289960 234250 120411 404060 310930 310980 325270 294230 351100 TRUE FALSE FALSE 308905.1964 266982.5136 324957.8734 280322.8932 353379.0271 272570.6179 233169.5148 251213.1216 319734.0933 263182.2747 1.173731007 1.01443957 1.234725529 1.065128317 1.342715908 1.035672399 0.885962077 0.954521431 1.214877004 1 18.0057028 -6.49969428 24.92888862 1.003016945 1.159245146 0.294429981 0.114167738 930.8591454 1000900.045 0.039819486 0.034879192 3.16E-07 6.49969428 0.156228201 SDS(ph)GGS(ph)SSEPFDR ddPTM_HeLa_A486_30min_R1 1 SDSGGSSSEPFDR 13 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 S(0.002)DS(0.997)GGS(0.539)S(0.196)S(0.265)EPFDR 141.85 2.37E-07 156790000 214090 262240 190150 110030 289750 223140 282000 262910 197800 233720 TRUE FALSE FALSE 199083.3966 241459.1473 263781.1724 256155.4006 253406.8532 195611.2555 211440.6173 203051.1323 214945.4633 175194.9907 1.136353247 1.378230886 1.505643348 1.462116009 1.446427504 1.116534524 1.206887345 1.159000788 1.226892746 1 17.418602 -6.26301339 24.94357227 1.15586464 1.396239072 0.550465123 0.109631967 113.296888 1795416.623 0.038708777 0.03593588 5.46E-07 6.26301339 0.240374432 SDS(ph)GGSS(ph)SEPFDR ddPTM_HeLa_A485_30min_R1 1 SDSGGSSSEPFDR 13 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 S(0.003)DS(0.997)GGS(0.327)S(0.593)S(0.081)EPFDR 112.42 0.00020122 0 195010 185420 165130 226130 241110 192710 265410 238280 162090 274100 TRUE FALSE FALSE 238389.3017 207103.2561 226218.4586 238482.9093 217104.2418 202799.9976 208702.9853 179841.4564 194619.9762 205771.9144 1.158512338 1.006469987 1.099365087 1.158967248 1.055072275 0.985557228 1.014244271 0.873984464 0.945804372 1 17.65068656 -6.415910422 1.551731981 0.942373169 1.098698081 0.613284391 0.053384285 0.263005111 1.269253935 0.025451219 0.020475413 3.84E-07 6.415910422 0.156324912 SDS(ph)GGSSS(ph)EPFDR ddPTM_HeLa_A485_30min_R1 1 SDSGGSSSEPFDR 13 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 S(0.001)DS(0.999)GGS(0.157)S(0.339)S(0.504)EPFDR 162.93 1.76E-11 163600000 200480 198010 182930 225540 295680 180920 297020 265690 193820 327810 TRUE FALSE FALSE 245076.0844 221165.547 250603.4194 237860.6791 266241.061 190392.6914 233559.2506 200529.1109 232717.8962 246092.9999 0.995867759 0.898707184 1.01832811 0.966547928 1.081871736 0.773661549 0.949069054 0.814850934 0.945650207 1 17.9088441 -6.254338239 24.9998223 0.888350951 0.987086181 0.284573035 0.075007646 700.8089715 2467226.432 0.023578493 0.023115221 5.57E-07 6.254338239 0.098735231 SDS(ph)GGSSS(ph)EPFDR ddPTM_HeLa_A486_30min_R1 1 SDSGGSSSEPFDR 13 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 2 0 SDS(1)GGS(0.162)S(0.34)S(0.498)EPFDR 159.52 5.38E-09 221020000 248350 314730 219320 119830 337470 273400 339550 301960 222690 313540 TRUE FALSE FALSE 230941.9475 289789.6486 304246.5776 278970.2959 295141.3658 239670.6877 254590.9986 233210.2997 241992.9485 235027.5432 0.982616524 1.233002927 1.294514564 1.186968523 1.255773523 1.019755746 1.08323899 0.992267955 1.029636549 1 17.84247031 -6.271900786 24.51170729 1.028137778 1.198506344 0.509620231 0.081003513 460.1021542 1078043.617 0.02865122 0.025546661 5.35E-07 6.271900786 0.170368566 SDS(ph)GGSSSEPFDR ddPTM_HeLa_A485_30min_R1 1 SDSGGSSSEPFDR 13 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 S(0.001)DS(0.999)GGSSSEPFDR 157.56 7.41E-07 0 86825 121710 114840 105660 151560 108030 114250 158470 130750 137210 TRUE FALSE FALSE 106138.9217 135942.9258 157324.0949 111431.9383 136470.1542 113686.2838 89839.55416 119604.984 156990.3257 103006.0722 1.030414222 1.319756427 1.527328356 1.081799703 1.324874848 1.103685262 0.872177264 1.161144984 1.52408807 1 16.65236986 -6.271285375 23.8749112 1.126038052 1.26563362 0.08637015 0.201134998 969.1068068 2349914.918 0.072432738 0.064727515 5.35E-07 6.271285375 0.139595569 SDS(ph)LLSFR ddPTM_HeLa_A485_30min_R1 8 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.001)DS(0.998)LLSFR;SDS(0.726)LLS(0.274)FR;SDS(0.983)LLS(0.017)FR;SDS(0.999)LLS(0.001)FR;SDS(0.986)LLS(0.014)FR;SDS(1)LLSFR;SDS(1)LLSFR;S(0.002)DS(0.998)LLSFR ;;;;;;; 196.52 2.48E-06 2625117000 1881929 1803636 1733499 2447590 2314210 1624339 2236100 1739431 1784043 2964470 TRUE FALSE FALSE 2300557.613 2014555.541 2374792.417 2581295.644 2083799.127 1709386.878 1758338.968 1312832.82 2142084.066 2225482.186 1.033734454 0.905222047 1.067091182 1.159881513 0.936336017 0.768097309 0.790093481 0.589909382 0.96252582 1 21.08568652 -6.067936827 4.287074884 0.796335282 1.035561506 0.412283938 0.121141895 0.202937951 7.23101614 0.040087848 0.04112542 8.55E-07 6.067936827 0.239226225 SDS(ph)LLSFR ddPTM_HeLa_A486_30min_R1 8 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.002)DS(0.998)LLSFR;S(0.001)DS(0.999)LLSFR;SDS(0.998)LLS(0.002)FR;SDS(0.966)LLS(0.034)FR;SDS(1)LLSFR;SDS(0.999)LLS(0.001)FR;S(0.002)DS(0.998)LLSFR;S(0.022)DS(0.978)LLSFR ;;;;;;; 218.93 1.25E-08 3374502000 1941203 2191710 1469814 773869 2054530 2112595 2347409 2172583 1940681 2226124 TRUE FALSE FALSE 1805134.694 2018030.918 2038965.344 1801606.141 1796831.69 1851964.508 1760062.44 1677933.278 2108900.792 1668688.061 1.081768808 1.209351805 1.221897245 1.079654241 1.07679304 1.109832659 1.054758215 1.005540411 1.263807683 1 20.67028286 -5.279813411 24.09215666 1.084086785 1.174840536 0.209900867 0.076943676 717.1067471 940273.3795 0.020894829 0.031065279 5.25E-06 5.279813411 0.090753751 SDS(ph)PEIPFQAAAGPSDGLDAS(ph)SPGNSFVGLR ddPTM_HeLa_A486_30min_R1 1 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.464)DS(0.536)PEIPFQAAAGPSDGLDAS(0.602)S(0.391)PGNS(0.007)FVGLR 197.25 6.35E-29 77101000 56280 67979 46541 24379 72412 75259 86020 80449 63451 80144 TRUE FALSE FALSE 52335.06263 62592.09646 64562.92161 56755.54405 63329.41174 65974.30976 64496.88617 62132.51889 68950.98377 60075.42075 0.87115599 1.041891937 1.074697785 0.944738186 1.054165097 1.098191389 1.073598576 1.034241926 1.147740339 1 15.87448723 -5.93472833 7.70716571 1.07342309 0.994100808 0.301324834 0.06276948 0.332113979 33.80692721 0.019178114 0.021761451 1.16E-06 5.93472833 -0.079322282 SDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_A485_30min_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.159)DS(0.841)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.179)DS(0.821)PEIPFQAAAGPSDGLDASSPGNSFVGLR ; 146.94 1.17E-09 940560000 547630 536990 553560 806180 779300 696490 989600 927680 576400 1029080 TRUE FALSE FALSE 669448.4042 599786.3093 758344.8796 850219.572 701710.1557 732957.1394 778163.8757 700165.0255 692078.1929 772549.2948 0.86654458 0.776372865 0.981613581 1.100537633 0.9083047 0.948751289 1.007267602 0.906304659 0.895836936 1 19.55926747 -4.769110661 24.9966985 0.968464839 0.821458715 0.481250812 0.061096878 131.7606703 429343.7313 0.016552991 0.035518322 1.70E-05 4.769110661 -0.147006125 SDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_A486_30min_R1 3 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.126)DS(0.874)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.183)DS(0.817)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.138)DS(0.862)PEIPFQAAAGPSDGLDASSPGNSFVGLR ;; 200.35 4.06E-29 1223450000 1006860 1227430 888650 480356 1339830 1386550 1542320 1465680 1260690 1502050 TRUE FALSE FALSE 936284.3134 1130163.977 1232759.079 1118293.044 1171776.028 1215491.558 1156415.223 1131976.66 1369967.624 1125926.903 0.831567583 1.003763187 1.094883758 0.993219933 1.040721227 1.079547486 1.027078418 1.005373134 1.216746505 1 20.10268174 -4.296309692 3.040223648 1.054281104 0.804744586 0.540284117 0.062356272 0.245464076 3.526713577 0.01523723 0.141449196 5.05E-05 4.296309692 -0.249536518 SDS(ph)PENKYSDSTGHSK ddPTM_HeLa_A485_30min_R1 3 SDSPENKYSDSTGHSK 16 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3;E9PMZ7;C9JMU2 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 SDS(1)PENKYSDSTGHSK;S(0.005)DS(0.995)PENKYSDSTGHSK;SDS(1)PENKYSDSTGHSK ;; 227.06 2.79E-34 2475570000 1945870 1760730 1134330 2196270 2893300 2150790 3955080 3857070 1813410 4159460 TRUE FALSE FALSE 2378722.068 1966632.057 1553965.87 2316246.669 2605232.893 2263402.039 3110044.848 2911117.535 2177344.753 3122583.171 0.761780211 0.629809344 0.497653957 0.74177261 0.834319776 0.72484924 0.995984631 0.932278622 0.697289595 1 21.57430857 -5.636712672 2.730484207 0.863928952 0.62812902 0.468849338 0.111750729 0.243733477 3.67415551 0.035641591 0.048379276 2.31E-06 5.636712672 -0.235799933 SDS(ph)PENKYSDSTGHSK ddPTM_HeLa_A486_30min_R1 3 SDSPENKYSDSTGHSK 16 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0;Q9BTA9-3;E9PMZ7;C9JMU2 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 S(0.001)DS(0.999)PENKYSDSTGHSK;SDS(1)PENKYSDSTGHSK;S(0.001)DS(0.999)PENKYSDSTGHSK ;; 254.26 1.04E-50 2383930000 2125700 1772880 773810 147360 1840850 2149470 2928260 2618420 1493290 2016020 TRUE FALSE FALSE 1976699.407 1632390.532 1073449.955 343061.5272 1609953.428 1884290.246 2195578.376 2022262.926 1622729.58 1511195.47 1.30803688 1.080198138 0.710331639 0.227013337 1.065350883 1.246887172 1.452875171 1.338187525 1.073805217 1 20.52725885 -5.994472872 24.99759055 1.246587058 0.816227134 0.292831779 0.284876909 189.5677071 857350.2653 0.095799108 0.108309092 1.01E-06 5.994472872 -0.430359923 SDS(ph)PES(ph)DAER ddPTM_HeLa_A485_30min_R1 2 SDSPESDAER 10 0 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 0 S(0.002)DS(0.998)PES(1)DAER;SDS(1)PES(1)DAER ; 215.53 1.69E-16 754300000 302360 330710 265030 483840 309300 254800 319210 260040 262870 533170 TRUE FALSE FALSE 369618.9389 369383.6577 363075.6258 510270.9541 278505.006 268140.934 251008.1758 196264.7823 315625.5978 400260.5313 0.923445881 0.922858061 0.907098246 1.274847041 0.695809315 0.669916 0.627111984 0.490342582 0.788550389 1 18.61057984 -5.896131198 11.92278597 0.67840252 0.99379229 0.446598929 0.158152144 0.378411358 40.85105003 0.047778293 0.054188019 1.27E-06 5.896131198 0.31538977 SDS(ph)PES(ph)DAER ddPTM_HeLa_A486_30min_R1 2 SDSPESDAER 10 0 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 0 SDS(1)PES(1)DAER;SDS(1)PES(1)DAER ; 216.68 1.59E-16 668130000 855250 1465030 826980 436880 1003520 1266740 1247970 1192770 1155800 1273130 TRUE FALSE FALSE 795301.3915 1348935.687 1147208.803 1017078.719 877649.1641 1110462.498 935714.7063 921202.309 1255985.675 954329.9613 0.833361022 1.413489822 1.202109176 1.065751637 0.919649597 1.163604354 0.980493901 0.965287004 1.31609163 1 19.86412864 -5.30590295 7.183610559 1.052230101 1.175945746 0.049372018 0.170193935 0.581127522 80.56421921 0.046228551 0.069422621 4.94E-06 5.30590295 0.123715645 SDS(ph)PES(ph)DAEREK ddPTM_HeLa_A485_30min_R1 3 SDSPESDAEREK 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 0 S(0.407)DS(0.593)PES(1)DAEREK;S(0.197)DS(0.803)PES(1)DAEREK;S(0.212)DS(0.788)PES(1)DAEREK ;; 164.88 1.08E-07 0 620690 491370 519580 1440070 1068780 636900 1056020 897710 650130 1881370 TRUE FALSE FALSE 758760.3491 548831.4471 711794.2635 1518737.378 962368.5105 670247.0992 830392.7001 677545.2149 780605.1277 1412379.083 0.537221457 0.388586502 0.503968284 1.075304354 0.681381169 0.474551845 0.587938968 0.479719095 0.552688111 1 20.42969593 -10.55110613 3.024006518 1.01802654 0.589280281 0.32330726 0.179297317 92324379.68 105922203.7 13566097.51 0.048396868 2.81E-11 10.55110613 -0.428746259 SDS(ph)PES(ph)DAEREK ddPTM_HeLa_A486_30min_R1 2 SDSPESDAEREK 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 2 0 S(0.185)DS(0.815)PES(1)DAEREK;S(0.006)DS(0.994)PES(1)DAEREK ; 204.23 6.01E-22 523810000 968290 1523230 822880 1154870 1611050 1897090 2492600 2304000 1230750 1984820 TRUE FALSE FALSE 900417.8713 1402523.707 1141521.173 2688595.724 1408977.087 1663046.324 1868925.116 1779429.496 1337432.401 1487808.153 0.605197565 0.942677794 0.767250247 1.807084951 0.947015301 1.117782774 1.256160018 1.196007356 0.898927996 1 20.50475708 SDS(ph)PPAPLRPWVPLRK ddPTM_HeLa_A486_30min_R1 1 SDSPPAPLRPWVPLRK 16 2 C9J8D8;B9ZVR7;Q15772-1;Q15772 C9J8D8 SPEG Striated muscle preferentially expressed protein kinase 1 0 S(0.011)DS(0.989)PPAPLRPWVPLRK 96.143 0.0003235 119470000 105340 107340 69815 50408 122740 112090 126520 122130 96865 153930 TRUE FALSE FALSE 97956.20998 98833.98747 96849.23771 117352.3715 107344.8047 98261.47545 94863.35781 94323.66508 105261.3362 115384.9261 0.848951534 0.856558918 0.8393578 1.017051148 0.930319136 0.851597161 0.822146887 0.817469563 0.912262457 1 16.81609524 -6.367868579 0.008896971 1.769317889 2.36E-06 0.131991435 0.0639188 9659.871487 36.80638445 3578.911525 3737.743897 4.29E-07 6.367868579 -1.769315532 SDS(ph)PVPTAPTSGGPKPSTASAVPELATDPELEKK ddPTM_HeLa_A485_30min_R1 1 SDSPVPTAPTSGGPKPSTASAVPELATDPELEKK 34 2 F5H6D8;B4DTN4;Q86U44;B4E349 F5H6D8 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 S(0.165)DS(0.763)PVPT(0.04)APT(0.012)S(0.012)GGPKPS(0.002)T(0.002)AS(0.002)AVPELATDPELEKK 65.71 0.001595 1820400000 213070 105890 66829 415170 182230 206110 415660 358540 132220 550330 TRUE FALSE FALSE 260466.6864 118272.9144 91551.82809 437849.6858 164086.5414 216901.6009 326850.8454 270607.5028 158755.3412 413142.8591 0.630451866 0.286276071 0.221598476 1.059802139 0.397166592 0.525003872 0.791132748 0.65499741 0.384262581 1 18.65628121 -14 0.144765515 2.483396182 0.410128867 0.233909018 0.239153986 207.1261945 1.808290374 89.48094832 1.357743695 1.00E-14 14 -2.073267315 SDS(ph)PVPTAPTSGGPKPSTASAVPELATDPELEKK ddPTM_HeLa_A486_30min_R1 2 SDSPVPTAPTSGGPKPSTASAVPELATDPELEKK 34 2 F5H6D8;B4DTN4;Q86U44;B4E349 F5H6D8 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 SDS(0.999)PVPT(0.001)APTSGGPKPSTASAVPELATDPELEKK;SDS(1)PVPTAPTSGGPKPSTASAVPELATDPELEKK ; 277.7 2.31E-78 3219600000 807960 682190 167204 553870 514960 1023700 1530710 1271700 517360 1854620 TRUE FALSE FALSE 751326.1763 628130.7799 231949.8667 1289437.351 450368.915 897406.3022 1147710.168 982161.671 562205.1814 1390211.08 0.54044036 0.451824035 0.166845071 0.927511922 0.323957219 0.645518019 0.825565401 0.706483846 0.404402748 1 20.40687252 -14 0.082852438 2.392862942 0.155957765 0.29302046 0.215868921 303.1899182 1.766071371 76.98824694 6.608450759 1.00E-14 14 -2.236905177 SDS(ph)QASLTVPLSPQVVR ddPTM_HeLa_A485_30min_R1 1 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 S(0.024)DS(0.976)QASLTVPLSPQVVR 91.657 0.00084065 47754000 40262 56171 63615 53290 69497 50508 74718 68222 53546 75232 TRUE FALSE FALSE 49218.143 62739.70983 87148.83574 56201.09776 62577.63466 53152.52078 58753.88891 51490.44753 64292.19105 56478.04694 0.871456179 1.11086897 1.543056824 0.995096339 1.107999268 0.941118251 1.040296046 0.911689591 1.138357194 1 15.78540258 SDS(ph)QASLTVPLSPQVVR ddPTM_HeLa_A486_30min_R1 1 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 S(0.047)DS(0.948)QAS(0.003)LT(0.002)VPLSPQVVR 61.265 0.022733 53518000 49846 48638 39808 17448 64857 53943 67132 65361 45410 55072 TRUE FALSE FALSE 46352.05281 44783.74774 55222.7237 40619.82577 56722.03029 47288.06111 50334.86355 50479.72712 49346.17536 41281.61274 1.122825629 1.084835227 1.337707517 0.983968965 1.37402651 1.145499363 1.219304678 1.222813833 1.195354834 1 15.33321171 SDS(ph)SQPMLLR ddPTM_HeLa_A485_30min_R1 3 SDSSQPMLLR 10 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532;P11532-9;P11532-16;A0A5H1ZRR9;P11532-13 A0A5H1ZRP9 DMD Dystrophin 1 0 SDS(0.846)S(0.154)QPMLLR;S(0.002)DS(0.893)S(0.105)QPMLLR;SDS(0.5)S(0.5)QPMLLR ;; 176.97 5.07E-08 375670000 315285 316679 321897 348570 466630 320591 448530 497940 369050 473630 TRUE FALSE FALSE 385419.0605 353711.8543 440980.0956 367611.4965 420170.6788 337376.649 352697.9013 375819.4343 443114.9499 355562.7575 1.083969151 0.99479444 1.240231397 1.033886392 1.181706098 0.948852606 0.991942755 1.056970749 1.246235553 1 18.4397447 -6.246562801 24.97927012 1.048807396 1.104037471 0.080105802 0.09822952 2521.82723 4234398.021 0.032698792 0.032580438 5.67E-07 6.246562801 0.055230075 SDS(ph)SQPMLLR ddPTM_HeLa_A486_30min_R1 2 SDSSQPMLLR 10 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532;P11532-9;P11532-16;A0A5H1ZRR9;P11532-13 A0A5H1ZRP9 DMD Dystrophin 1 0 SDS(0.987)S(0.013)QPMLLR;SDS(0.877)S(0.123)QPMLLR ; 217.24 7.37E-17 96258000 272120 281720 198629 147622 302550 311080 348790 397810 237450 353350 TRUE FALSE FALSE 253045.7932 259395.4812 275543.4683 343671.4764 264601.3578 272702.1124 261519.0529 307237.3471 258032.3572 264868.8601 0.955362564 0.979335514 1.040301484 1.297515594 0.998990058 1.029574078 0.987352959 1.159960242 0.974189103 1 18.01491871 -4.795870136 4.415902989 1.070238079 0.964893802 0.137336005 0.093799682 0.351558442 15.22843372 0.024922908 0.059841644 1.60E-05 4.795870136 -0.105344277 SDS(ph)VSASER ddPTM_HeLa_A485_30min_R1 4 SDSVSASER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 SDS(1)VSASER;SDS(0.999)VSASER;SDS(0.999)VS(0.001)ASER;SDS(0.999)VS(0.001)ASER ;;; 212.28 1.96E-10 1691360000 1282530 1331190 1348830 1687930 1793960 1312460 1644430 1725960 1343550 2096100 TRUE FALSE FALSE 1567824.374 1486861.091 1847818.346 1780137.342 1615347.043 1381178.376 1293084.097 1302665.604 1613188.161 1573580.846 0.996341801 0.944890181 1.17427608 1.131265258 1.026542136 0.87772953 0.82174621 0.827835193 1.025170181 1 20.58561987 -6.175128397 4.496535086 0.894276364 1.062740327 0.409112192 0.086052941 0.219216781 7.887576735 0.03061571 0.030471638 6.68E-07 6.175128397 0.168463962 SDS(ph)VSASER ddPTM_HeLa_A486_30min_R1 4 SDSVSASER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 SDS(1)VSASER;SDS(1)VSASER;SDS(0.982)VS(0.018)ASER;SDS(1)VSASER ;;; 252.68 2.94E-21 1784320000 1707420 1809300 1473760 891390 1986930 2201250 2255620 2392430 1969740 2600540 TRUE FALSE FALSE 1587738.675 1665924.479 2044439.341 2075200.968 1737710.712 1929682.156 1691240.018 1847725.915 2140478.649 1949347.857 0.814497356 0.854606053 1.048781177 1.064561648 0.891431822 0.989911651 0.867592724 0.947868749 1.098048581 1 20.89456013 -4.634551158 6.032546177 0.981307477 0.824787797 0.442827356 0.06921499 0.188525334 9.025695664 0.018367409 0.050047293 2.32E-05 4.634551158 -0.15651968 SDS(ph)YSQSLK ddPTM_HeLa_A485_30min_R1 1 SDSYSQSLK 9 0 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 1 0 S(0.001)DS(0.968)YS(0.031)QSLK 93.345 0.0021899 0 213690 151760 90812 357630 217240 189650 355540 322810 154330 470090 TRUE FALSE FALSE 261224.6033 169507.0119 124407.1378 377166.4213 195610.8228 199579.7807 279575.9745 243640.3414 185302.6154 352905.2144 0.740211798 0.480318808 0.35252281 1.068747091 0.554287142 0.565533669 0.792212648 0.690384646 0.525077579 1 18.42892122 -11.42589796 2.223558492 4.17371009 0.641526338 0.246861035 0.188097501 17699432.71 1709209.379 282360556.8 0.04787964 3.75E-12 11.42589796 -3.532183752 SDSDS(ph)STLSK ddPTM_HeLa_A486_30min_R1 1 SDSDSSTLSK 10 0 H3BLZ3;Q8IX03-2;H0YAU4;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 SDS(0.045)DS(0.808)S(0.108)T(0.039)LSK 189.56 7.14E-10 912800000 1164300 1289800 756920 630960 1299500 1557000 1894500 1776300 1107000 1814400 TRUE FALSE FALSE 1082688.582 1187591.551 1050019.695 1468906.767 1136504.593 1364913.17 1420476.062 1371875.266 1202955.651 1360062.43 0.796058003 0.873188998 0.772037865 1.080028927 0.835626783 1.003566557 1.044419749 1.00868551 0.884485612 1 20.37524145 -5.248865681 24.98565871 0.977614086 0.819704354 0.527322745 0.071845015 625.9906906 1243927.223 0.019123159 0.032843004 5.64E-06 5.248865681 -0.157909732 SDSDYDLS(ph)PK ddPTM_HeLa_A485_30min_R1 5 SDSDYDLSPK 10 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q07343-3;Q07343;E9PMG3;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D;PDE4B "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B" 1 0 SDSDYDLS(1)PK;SDS(0.001)DYDLS(0.999)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK ;;;; 208.33 4.46E-14 5976420000 5105680 4546650 3315010 10325410 6817350 5290890 9564070 9015220 4274740 13074560 TRUE FALSE FALSE 6241420.902 5078341.167 4541370.148 10889461 6138590.697 5567912.819 7520628.313 6804223.16 5132641.108 9815312.811 0.635886092 0.51738964 0.462682162 1.109435961 0.625409583 0.567267995 0.766213819 0.693225299 0.522921807 1 23.22660282 -11.37720018 2.316840557 3.543202254 0.660085931 0.260306103 0.174018545 11368247.5 1265390.486 151738131.6 0.045783964 4.20E-12 11.37720018 -2.883116323 SDSDYDLS(ph)PK ddPTM_HeLa_A486_30min_R1 7 SDSDYDLSPK 10 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q07343-3;Q07343;E9PMG3;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D;PDE4B "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B" 1 0 SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDSDYDLS(1)PK ;;;;;; 236.08 9.11E-21 7976720000 11064700 10876930 4935930 8294550 9681840 12643280 17876540 16052370 8544740 23677730 TRUE FALSE FALSE 10289121.67 10015002.45 6847254.285 19310131.58 8467453.348 11083480.66 13403640.61 12397595.77 9285404.943 17748672.29 0.579712189 0.564267698 0.385789662 1.087976118 0.477075311 0.624468156 0.755191171 0.698508349 0.523160538 1 24.08120777 -13.99999999 0.290081928 3.78657196 0.617384815 0.261637288 0.182813676 350.3537582 3.308139415 591.4358355 0.193971093 1.00E-14 13.99999999 -3.169187145 SDSFENPVLQQHFR ddPTM_HeLa_A485_30min_R1 4 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 ;;; ;;; 161.04 2.85E-11 289096000 316882 498981 545219 245432 432687 576852 401370 527342 519439 326608 FALSE FALSE TRUE 387371.3077 557332.4874 746918.1966 258839.3287 389607.163 607055.0787 315614.0206 398010.5477 623685.6427 245190.6364 1.579878063 2.273057795 3.04627537 1.055665634 1.588996908 2.475849354 1.287218897 1.623269769 2.54367643 1 17.90354436 -10.9960148 3.486473269 0.094952574 1.934470541 0.183499006 0.595662713 716247.481 102112356.3 4355952.492 0.1500263 1.01E-11 10.9960148 1.839517967 SDSFENPVLQQHFR ddPTM_HeLa_A486_30min_R1 1 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 0 182.57 7.83E-17 202170000 131020 178490 152270 50859 212980 137360 160540 170840 148090 160000 FALSE FALSE TRUE 121836.1746 164345.8024 211233.0219 118402.3223 186266.0624 120413.9198 120371.194 131943.4614 160926.5604 119934.9586 1.015852059 1.370291067 1.76122979 0.987221104 1.553058963 1.003993508 1.003637266 1.100125126 1.341781932 1 16.87189271 -6.279965083 24.90192552 1.090773487 1.343427845 0.220950044 0.232351134 1246.536478 1675567.137 0.081007908 0.071569517 5.25E-07 6.279965083 0.252654357 SDSLS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 SDSLSPPR 8 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SDS(0.01)LS(0.99)PPR;SDS(0.003)LS(0.997)PPR;SDS(0.001)LS(0.999)PPR;SDSLS(1)PPR ;;; 140.11 9.13E-05 2250400000 3702970 4641490 4363400 4438630 5553080 4358400 5289650 4869830 4394750 5680130 TRUE FALSE FALSE 4526682.901 5184271.88 5977603.236 4681101.118 5000195.857 4586599.085 4159473.065 3675496.557 5276736.014 4264178.126 1.061560462 1.215772823 1.401818371 1.097773353 1.172604828 1.075611513 0.97544543 0.861947238 1.237456752 1 22.02383627 -6.224880694 1.712571887 1.008484753 1.211364614 0.308832876 0.121026814 0.423856319 2.460297516 0.050872319 0.047632728 5.96E-07 6.224880694 0.202879861 SDSLS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 SDSLSPPR 8 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SDS(0.001)LS(0.999)PPR;SDS(0.004)LS(0.995)PPR;SDS(0.002)LS(0.998)PPR;SDS(0.005)LS(0.995)PPR ;;; 132.84 0.00018351 3878700000 4099480 4717280 3497440 1404840 4997270 4384220 4958570 4798310 3879250 4765290 TRUE FALSE FALSE 3812127.622 4343465.553 4851742.433 3270538.517 4370465.799 3843339.512 3717883.34 3705839.559 4215506.513 3572030.367 1.067215905 1.215965461 1.358259011 0.915596504 1.223524256 1.075953762 1.040831952 1.037460262 1.180142966 1 21.76831291 -5.257650659 24.98897585 1.074929141 1.214028645 0.289732725 0.104441114 435.8532078 2874715.514 0.02799025 0.046294434 5.53E-06 5.257650659 0.139099504 SDSLS(ph)PPRHGR ddPTM_HeLa_A485_30min_R1 1 SDSLSPPRHGR 11 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.002)DS(0.192)LS(0.805)PPRHGR 43.813 0.032133 92691000 40132 85869 68641 45363 105700 113730 143170 301120 56046 74318 TRUE FALSE FALSE 49059.22495 95910.63259 94034.16229 47841.06582 95176.13686 119684.7269 112580.5599 227269.8479 67293.91812 55791.89032 0.879325376 1.719078383 1.685444995 0.857491394 1.705913464 2.145199352 2.017866024 4.073528367 1.206159492 1 15.76776781 -6.19201459 2.626497902 2.299154529 1.340284001 0.148099415 0.827721389 0.444166789 6.018282664 0.294980082 0.286065062 6.43E-07 6.19201459 -0.958870528 SDSPES(ph)DAER ddPTM_HeLa_A485_30min_R1 2 SDSPESDAER 10 0 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 SDSPES(1)DAER;SDSPES(1)DAER ; 253.88 2.65E-26 1653730000 1456020 1418910 1315260 1722020 1349890 1084540 1358830 1018100 1271560 1880240 TRUE FALSE FALSE 1779906.626 1584839.182 1801829.407 1816089.592 1215490.212 1141324.837 1068504.87 768409.3787 1526750.429 1411530.771 1.260976142 1.122780469 1.276507352 1.286609991 0.861114923 0.80857241 0.756983051 0.544380182 1.08162745 1 20.42882915 -5.810696194 5.702733634 0.809595268 1.231630517 0.645201942 0.142337552 0.112822117 8.167495269 0.043367294 0.050206251 1.55E-06 5.810696194 0.422035249 SDSPES(ph)DAER ddPTM_HeLa_A486_30min_R1 2 SDSPESDAER 10 0 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 SDSPES(1)DAER;SDSPES(1)DAER ; 249.92 1.41E-21 1358770000 1269130 1922840 1139650 467280 1336940 1597100 1577580 1433280 1470120 1623590 TRUE FALSE FALSE 1180170.541 1770467.156 1580953.001 1087851.455 1169248.519 1400066.04 1182852.798 1106953.432 1597551.185 1217032.496 0.96971161 1.45474107 1.299022833 0.893855717 0.960737304 1.150393309 0.971915542 0.909551253 1.312661075 1 20.21493626 -5.246582039 24.48812823 1.024580832 1.262516789 0.264136327 0.161434655 746.1315232 1229784.045 0.042509211 0.073206811 5.67E-06 5.246582039 0.237935957 SDSPES(ph)DAEREK ddPTM_HeLa_A485_30min_R1 1 SDSPESDAEREK 12 1 O75400-3;O75400;O75400-2 O75400-3;O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 SDS(0.006)PES(0.994)DAEREK 214.11 5.81E-17 551400000 188950 146450 133800 327820 258720 178570 268410 251400 172530 423380 TRUE FALSE FALSE 230981.2756 163576.0536 183298.1879 345727.9765 232960.9284 187919.6491 211062.0108 189743.7558 207155.1885 317839.1577 0.726723785 0.514650412 0.576701087 1.087745069 0.732952258 0.591241339 0.664052889 0.596980426 0.651761067 1 18.27793735 -11.3018964 2.267278699 2.537498598 0.682139661 0.287290382 0.15000665 24789110.84 3353209.205 195404304.5 0.040508952 4.99E-12 11.3018964 -1.855358938 SDSQASLTVPLS(ph)PQVVR ddPTM_HeLa_A485_30min_R1 4 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 SDSQASLT(0.007)VPLS(0.993)PQVVR;SDSQASLT(0.072)VPLS(0.928)PQVVR;SDSQASLTVPLS(1)PQVVR;SDSQASLTVPLS(1)PQVVR ;;; 332.69 1.46E-91 1122970000 826139 1065650 1024210 886890 1295740 1075120 1254580 1306740 906540 1235130 TRUE FALSE FALSE 1009910.77 1190268.498 1403107.9 935338.555 1166731.576 1131411.621 986528.734 986259.9661 1088474.263 927234.8219 1.089163982 1.283675364 1.513217436 1.008739677 1.258291372 1.220199667 1.063947029 1.06365717 1.17389278 1 19.82257522 -6.58644993 0.76325023 1.058442614 1.261316965 0.229408519 0.131669926 1.019845958 1.21787604 0.105098459 0.075116302 2.59E-07 6.58644993 0.202874351 SDSQASLTVPLS(ph)PQVVR ddPTM_HeLa_A486_30min_R1 2 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 SDSQASLTVPLS(1)PQVVR;SDSQASLT(0.001)VPLS(0.999)PQVVR ; 252.55 2.48E-51 1055210000 941560 1003600 790570 341470 1230700 916780 1070320 972700 809770 1051050 TRUE FALSE FALSE 875561.5062 924071.081 1096699.876 794959.4169 1076334.13 803677.0047 802514.6153 751237.4439 879961.5156 787860.2388 1.111315768 1.172887062 1.391997999 1.009010707 1.366148559 1.020075599 1.018600223 0.953516127 1.116900527 1 19.5875802 -6.337526399 14.43030306 1.018661801 1.207103456 0.418334747 0.1110464 2.323955107 439.3605186 0.037115682 0.032731214 4.60E-07 6.337526399 0.188441655 SDSVLPASHGHLPQAGS(ph)LER ddPTM_HeLa_A485_30min_R1 6 SDSVLPASHGHLPQAGSLER 20 0 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER ;;;;; 232 2.37E-36 5478710000 1349950 1939160 1859620 962590 2199240 1684270 2142990 2359320 1735310 2105410 TRUE FALSE FALSE 1650241.72 2165927.894 2547570.823 1015173.854 1980275.944 1772455.773 1685122.68 1780693.071 2083570.8 1580570.034 1.044080101 1.370346044 1.611805088 0.642283374 1.252887187 1.12140287 1.066148695 1.12661447 1.3182401 1 20.59201353 -5.230861489 24.99991893 1.089574098 1.344903863 0.246446469 0.212688592 1032.938888 844510.738 0.056701514 0.098196476 5.88E-06 5.230861489 0.255329766 SDSVLPASHGHLPQAGS(ph)LER ddPTM_HeLa_A486_30min_R1 7 SDSVLPASHGHLPQAGSLER 20 0 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPAS(0.006)HGHLPQAGS(0.994)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER ;;;;;; 172.06 7.36E-14 4012300000 2179500 2320820 2144760 247585.1 3057650 1967690 2296030 2220320 2288610 1509000 TRUE FALSE FALSE 2026728.305 2136909.771 2975268.511 576390.6251 2674131.026 1724936.414 1721539.009 1714801.605 2486988.557 1131136.578 1.791762679 1.889170426 2.630335336 0.509567665 2.364109761 1.524958566 1.521955034 1.515998721 2.198663367 1 20.10934171 -11.04420095 2.494807682 0.021570199 1.758695882 0.148398884 0.553883775 11715506.54 3364579.453 65545207.15 0.13071293 9.03E-12 11.04420095 1.737125682 SDT(ph)SPVAGKK ddPTM_HeLa_A485_30min_R1 1 SDTSPVAGKK 10 1 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 0 SDT(0.5)S(0.5)PVAGKK 76.533 0.0085201 67794000 177590 130740 87096 238630 178420 169220 223080 218300 151510 376540 TRUE FALSE FALSE 217094.2828 146028.9057 119316.4348 251665.7527 160655.8783 178080.0975 175417.1356 164761.5827 181916.6673 282675.5077 0.767998206 0.516595537 0.422096827 0.890299109 0.568340284 0.629980641 0.62056008 0.582864727 0.643552987 1 18.10878736 -8.061577074 19.44228258 1.000000001 0.620952996 0.45727398 0.122026368 1239.794499 391452.8321 0.115342291 0.029781251 8.68E-09 8.061577074 -0.379047005 SDT(ph)SSPEVR ddPTM_HeLa_A485_30min_R1 2 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SDT(0.527)S(0.333)S(0.14)PEVR;SDT(0.721)S(0.17)S(0.109)PEVR ; 132.01 0.00077416 329410000 310050 336480 358500 400970 498340 333900 468140 409800 358750 537920 TRUE FALSE FALSE 379019.5528 375828.409 491124.0684 422873.9758 448723.5198 351382.4877 368118.0646 309295.9075 430747.8344 403826.4437 0.938570415 0.930668149 1.216176098 1.04716762 1.111179139 0.870132437 0.911574936 0.765912962 1.066665745 1 18.62337586 -6.266895698 24.96771789 0.907521631 1.051405341 0.253034235 0.106487539 586.6134534 2684292.648 0.037238422 0.033775692 5.41E-07 6.266895698 0.14388371 SDT(ph)SSPEVR ddPTM_HeLa_A486_30min_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SDT(0.333)S(0.333)S(0.333)PEVR 105.4 0.0033835 0 85036 95232 84572 38140 110040 93905 100260 94574 82907 101820 TRUE FALSE FALSE 79075.41553 87685.46949 117320.5433 88791.84749 96237.75712 82319.95586 75173.88756 73041.56474 90093.44551 76323.60926 1.036054457 1.148864294 1.537146166 1.163360176 1.260917271 1.078564767 0.984936225 0.956998306 1.180413851 1 16.21984178 -6.368858862 3.87003343 1.02740731 1.238451818 0.339205815 0.132588414 0.282191624 7.539239688 0.050351146 0.043971816 4.28E-07 6.368858862 0.211044509 SDTEIS(ph)LEVTDVEESVEKEK ddPTM_HeLa_A485_30min_R1 1 SDTEISLEVTDVEESVEKEK 20 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 SDT(0.003)EIS(0.996)LEVT(0.001)DVEESVEKEK 116.24 7.21E-06 24782000 10666 9584.7 6838.6 28700 23103 19099 33214 46864 16737 42578 TRUE FALSE FALSE 13038.6149 10705.54729 9368.482718 30267.80833 20802.7842 20098.99411 26117.55757 35370.53052 20095.96238 31964.08819 0.407914495 0.33492422 0.293094008 0.946931699 0.650817382 0.628799232 0.817090649 1.106570921 0.628704384 1 14.96416432 -5.233392934 0.582370933 0.896482087 0.200218297 0.549326502 0.180546428 1.15895699 0.621374223 0.116846676 0.478855212 5.84E-06 5.233392934 -0.69626379 SDTEIS(ph)LEVTDVEESVEKEK ddPTM_HeLa_A486_30min_R1 1 SDTEISLEVTDVEESVEKEK 20 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 S(0.006)DT(0.03)EIS(0.964)LEVTDVEESVEKEK 94.449 0.00021173 29395000 16304 13363 6226.1 23160 15592 21791 34408 30075 13277 31777 TRUE FALSE FALSE 15161.17379 12304.06721 8637.012661 53917.65044 13636.30597 19102.64797 25798.75447 23227.57903 14427.86105 23819.83237 0.636493723 0.516547179 0.362597542 2.263561288 0.572476991 0.801963997 1.083078759 0.975136125 0.605707917 1 14.53987564 SDTEISLEVTDVEES(ph)VEKEK ddPTM_HeLa_A485_30min_R1 2 SDTEISLEVTDVEESVEKEK 20 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 SDTEISLEVTDVEES(1)VEKEK;SDTEISLEVTDVEES(1)VEKEK ; 135.68 1.17E-07 79670000 53283 38174 26595 118509 58490 48624 102055 96010 38275 170803 TRUE FALSE FALSE 65135.61953 42638.11723 36433.59721 124982.8466 52666.53023 51169.87745 80250.11554 72463.39696 45956.44142 128224.9555 0.507979272 0.332525888 0.284138115 0.974715461 0.410735414 0.399063328 0.625854111 0.565127098 0.358404815 1 16.96831755 -10.79652232 2.75910086 1.13751018 0.499052644 0.389980365 0.189282401 287144767.9 215690392.1 264768406.6 0.047091798 1.60E-11 10.79652232 -0.638457536 SDTEISLEVTDVEES(ph)VEKEK ddPTM_HeLa_A486_30min_R1 3 SDTEISLEVTDVEESVEKEK 20 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 SDTEISLEVTDVEES(1)VEKEK;SDTEISLEVTDVEES(1)VEKEK;SDTEISLEVTDVEES(1)VEKEK ;; 191.5 1.12E-19 243919000 227725 208103 133471 185463 203806 264756 376765 307339 200829 392545 TRUE FALSE FALSE 211762.6535 191612.1604 185154.5457 431767.2368 178242.7511 232093.0966 282494.412 237364.6189 218237.0194 294249.177 0.719671184 0.651190132 0.629244056 1.467352403 0.605754459 0.788763792 0.960051664 0.806678956 0.741674188 1 18.16667885 SDTLTDS(ph)QIDRDLHK ddPTM_HeLa_A486_30min_R1 1 SDTLTDSQIDRDLHK 15 1 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 SDTLTDS(1)QIDRDLHK 202.61 1.40E-25 68023000 78851 80781 60946 38233 108280 94997 126690 120740 74687 110420 TRUE FALSE FALSE 73323.95209 74379.61936 84545.92339 89008.35619 94698.51273 83277.236 94990.82201 93250.13774 81160.9293 82770.11329 0.885874734 0.898628942 1.021454726 1.075368302 1.144114814 1.006126882 1.147646394 1.126616046 0.980558393 1 16.33682231 -4.853246745 2.583340958 1.077271161 0.88339358 0.596932046 0.056875547 0.173407651 2.298356551 0.015274314 0.042879347 1.40E-05 4.853246745 -0.193877581 SDTPEVHPPLPIS(ph)QSPENESNDRR ddPTM_HeLa_A485_30min_R1 1 SDTPEVHPPLPISQSPENESNDRR 24 1 Q03164-2;Q03164;Q03164-3;E9PR05;A0A3B3ITZ1 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 SDTPEVHPPLPIS(0.5)QS(0.5)PENESNDRR 145.87 2.73E-09 125090000 98692 157730 161180 129660 236650 122000 178670 295500 192860 261650 TRUE FALSE FALSE 120645.6949 176175.1514 220807.1893 136742.9975 213088.2951 128387.7314 140495.6949 223028.1617 231565.233 196425.4703 0.614205962 0.89690584 1.124127074 0.69615716 1.084830265 0.653620588 0.715262103 1.135434021 1.178896162 1 17.58362249 -7.275719974 24.34304079 1.117873877 0.838883382 0.362246667 0.168404879 649.3267524 1106849.942 0.091261305 0.044194965 5.30E-08 7.275719974 -0.278990495 SDTPEVHPPLPIS(ph)QSPENESNDRR ddPTM_HeLa_A486_30min_R1 1 SDTPEVHPPLPISQSPENESNDRR 24 1 Q03164-2;Q03164;Q03164-3;E9PR05;A0A3B3ITZ1 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 SDTPEVHPPLPIS(0.499)QS(0.499)PENES(0.002)NDRR 138.71 7.98E-07 99400000 40329 44308 35116 13068 48202 39108 48592 44674 30033 46979 TRUE FALSE FALSE 37502.14536 40796.87271 48713.85564 30422.96442 42156.05569 34283.25258 36433.76765 34502.70543 32636.28462 35215.15262 1.064943428 1.158503362 1.383320872 0.86391687 1.1970999 0.973536959 1.034604849 0.979768732 0.926768229 1 15.10390871 -5.930769834 0.881995859 0.974117098 1.173842054 0.264051621 0.123541795 0.807086498 1.37760304 0.066110894 0.088204921 1.17E-06 5.930769834 0.199724957 SDTS(ph)SPEVR ddPTM_HeLa_A485_30min_R1 2 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SDT(0.077)S(0.807)S(0.117)PEVR;SDT(0.021)S(0.889)S(0.09)PEVR ; 185.6 3.11E-14 2531300000 2050640 2185440 2336420 2507630 3077300 2132760 2864300 2434380 2320460 3321300 TRUE FALSE FALSE 2506797.793 2441008.197 3200758.985 2644615.477 2770913.207 2244428.016 2252318.906 1837344.488 2786155.037 2493361.034 1.005389015 0.979003106 1.283712604 1.060662873 1.11131648 0.900161663 0.903326424 0.736894683 1.117429445 1 21.24966037 -6.262777772 24.84682362 0.913353603 1.091312827 0.299807514 0.117864536 127.7862443 2372295.806 0.040006048 0.037270642 5.46E-07 6.262777772 0.177959223 SDTSS(ph)PEVR ddPTM_HeLa_A485_30min_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SDT(0.002)S(0.119)S(0.879)PEVR 175.34 2.40E-06 2223000000 2378500 2753100 2636800 2980200 3704700 2478900 3130100 2751000 2714600 3783300 TRUE FALSE FALSE 2907589.119 3075051.096 3612262.046 3143000.78 3335847.06 2608691.371 2461328.564 2076312.937 3259395.32 2840192.936 1.023729438 1.082690917 1.271836853 1.106615237 1.174514244 0.918490902 0.866606114 0.731046441 1.147596446 1 21.43755751 -6.269093657 23.50226886 0.911804482 1.13551684 0.418931658 0.115915324 232.5180645 713937.6553 0.039952558 0.035960504 5.38E-07 6.269093657 0.223712358 SDTSS(ph)PEVR ddPTM_HeLa_A486_30min_R1 4 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SDTS(0.002)S(0.998)PEVR;SDT(0.021)S(0.022)S(0.957)PEVR;SDT(0.022)S(0.099)S(0.879)PEVR;SDT(0.006)S(0.336)S(0.658)PEVR ;;; 234.28 9.90E-16 5200080000 6610440 7961700 6035760 2470360 8260300 7445100 8194000 8213500 6851910 7812800 TRUE FALSE FALSE 6147082.292 7330785.896 8372967.915 5751122.925 7224216.15 6526599.258 6143774.533 6343465.349 7445839.076 5856424.027 1.049630673 1.251751216 1.429706571 0.982019556 1.233554148 1.114434206 1.049065864 1.083163603 1.271396853 1 22.48158858 -5.27692244 24.98148005 1.111713365 1.244501689 0.214958842 0.121127908 1256.102975 2026683.75 0.03376766 0.050285346 5.29E-06 5.27692244 0.132788324 SDVS(ph)PIIQPVPSIK ddPTM_HeLa_A485_30min_R1 2 SDVSPIIQPVPSIK 14 0 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SDVS(1)PIIQPVPSIK;S(0.018)DVS(0.982)PIIQPVPSIK ; 162.46 1.44E-07 120080000 262610 292020 236035 300820 396200 280930 402870 454440 267340 447330 TRUE FALSE FALSE 321026.6885 326169.1988 323354.1687 317253.0349 356752.9369 295639.0604 316793.5334 342987.8775 320992.6858 335818.8635 0.955951923 0.971265269 0.962882684 0.944714754 1.062337396 0.880352751 0.943346452 1.02134786 0.95585067 1 18.35732375 -7.246462624 24.81571241 0.991449453 0.960927175 0.099579889 0.044404898 1799.284889 2981328.981 0.020855398 0.011978834 5.67E-08 7.246462624 -0.030522278 SDVS(ph)PIIQPVPSIK ddPTM_HeLa_A486_30min_R1 2 SDVSPIIQPVPSIK 14 0 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 S(0.02)DVS(0.98)PIIQPVPSIK;S(0.002)DVS(0.998)PIIQPVPSIK ; 135.81 1.02E-05 1088500000 967150 989710 621480 438430 1107150 1098270 1247650 1266830 857230 1215450 TRUE FALSE FALSE 899357.7794 911281.7751 862133.6998 1020687.197 968280.9232 962776.6138 935474.7737 978400.4637 931535.3866 911093.4087 0.987119181 1.000206748 0.94626269 1.120288202 1.062768004 1.056726571 1.026760555 1.073875032 1.022436753 1 19.79723945 -5.245507195 24.99971472 1.054528983 0.980097261 0.506236499 0.033382846 653.0252003 1024682.457 0.008807555 0.015181881 5.68E-06 5.245507195 -0.074431722 SDYLNTFEFMDK ddPTM_HeLa_A485_30min_R1 1 SDYLNTFEFMDK 12 0 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 84.507 0.025881 0 2849.7 2285.1 2276.8 3206 4593.3 2399 3641 3419.4 1690.9 5550.8 FALSE FALSE TRUE 3483.605934 2552.322567 3119.083066 3381.135662 4135.974924 2524.60793 2863.070606 2580.786789 2030.24812 4167.087715 0.835980947 0.612495523 0.748504298 0.811390567 0.992533685 0.605844682 0.687067516 0.619326245 0.487210315 1 12.02482375 SEAAAPHTDAGGGLS(ph)S(ph)DEEEGTSSQAEAAR ddPTM_HeLa_A485_30min_R1 3 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR 30 0 Q01831-2;Q01831 Q01831-2 XPC DNA repair protein complementing XP-C cells 2 0 SEAAAPHT(0.002)DAGGGLS(0.998)S(1)DEEEGTSSQAEAAR;SEAAAPHT(0.008)DAGGGLS(0.993)S(0.997)DEEEGT(0.001)SSQAEAAR;SEAAAPHTDAGGGLS(0.999)S(0.999)DEEEGT(0.001)SSQAEAAR ;; 120.65 1.23E-05 1508520000 456460 664690 652760 516560 822660 627740 764930 1062440 678070 1053360 TRUE FALSE FALSE 557997.9522 742419.7135 894243.0876 544778.3648 740753.0819 660607.4957 601496.4566 801874.9242 814152.4294 790776.7377 0.705632735 0.938848702 1.130841418 0.688915517 0.936741114 0.835390654 0.760640049 1.014034538 1.029560419 1 19.59291091 -7.300523498 20.09877177 1.016349373 0.866221967 0.25611867 0.122491973 85.24947918 43836.14502 0.067294892 0.032332221 5.01E-08 7.300523498 -0.150127406 SEAAAPHTDAGGGLS(ph)S(ph)DEEEGTSSQAEAAR ddPTM_HeLa_A486_30min_R1 1 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR 30 0 Q01831-2;Q01831 Q01831-2 XPC DNA repair protein complementing XP-C cells 2 0 SEAAAPHTDAGGGLS(0.999)S(0.999)DEEEGT(0.001)SSQAEAAR 137.57 9.07E-07 468720000 187980 245340 199930 68363 242520 191630 264170 246060 176010 214550 TRUE FALSE FALSE 174803.5727 225898.3649 277348.2503 159152.5189 212100.8802 167988.639 198071.8719 190037.5095 191266.6885 160825.2835 1.086915993 1.404619721 1.724531394 0.98959887 1.318827958 1.044541227 1.231596597 1.181639512 1.189282458 1 17.29513471 -5.286603942 24.99994298 1.151794393 1.405282252 0.333055428 0.173405449 885.5661694 879771.2028 0.048124803 0.071411421 5.17E-06 5.286603942 0.25348786 SEAAS(ph)PALPVITK ddPTM_HeLa_A485_30min_R1 5 SEAASPALPVITK 13 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK ;;;; 305.48 2.55E-58 4332930000 4085220 4383590 3401240 4532550 5318870 4450780 6057110 6106420 3570800 5314270 TRUE FALSE FALSE 4993963.095 4896212.718 4659500.213 4780151.729 4789304.627 4683815.959 4762958.966 4608810.921 4287426.807 3989520.291 1.251770321 1.227268534 1.167934958 1.198177069 1.200471304 1.174029863 1.193867588 1.155229347 1.074672265 1 21.92778385 -7.861587809 1.199635122 0.998326412 1.203725345 0.900752002 0.022312974 0.134546452 0.422613391 0.022404789 0.007164391 1.38E-08 7.861587809 0.205398933 SEAAS(ph)PALPVITK ddPTM_HeLa_A486_30min_R1 6 SEAASPALPVITK 13 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK;SEAAS(1)PALPVITK ;;;;; 328.49 8.50E-81 3844930000 6786640 6978320 4168780 2380190 6730330 6421720 7439440 7269770 5297380 7539480 TRUE FALSE FALSE 6310931.582 6425332.509 5783043.26 5541202.608 5886149.254 5629473.478 5578013.426 5614602.069 5756561.164 5651545.134 1.116673659 1.136916074 1.023267641 0.980475689 1.041511501 0.99609458 0.986989096 0.993463192 1.018581826 1 22.43021392 -4.819960988 4.780038318 1.003007502 1.127451777 0.889398185 0.017259973 0.052576974 2.403442163 0.004502115 0.010256795 1.51E-05 4.819960988 0.124444275 SEAEEGEVRT(ph)PTK ddPTM_HeLa_A485_30min_R1 3 SEAEEGEVRTPTK 13 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SEAEEGEVRT(1)PTK;SEAEEGEVRT(0.999)PT(0.001)K;SEAEEGEVRT(0.96)PT(0.04)K ;; 195.38 5.14E-18 6600310000 3436720 3069820 2036630 4156140 3720690 3647870 4910800 4557230 2887580 5948950 TRUE FALSE FALSE 4201206.507 3428808.745 2790064.188 4383179.404 3350245.039 3838866.833 3861567.462 3439562.197 3467090.82 4465986.247 0.940711922 0.767760704 0.624736404 0.98145833 0.750169135 0.85957874 0.864661745 0.77016856 0.776332623 1 22.09054738 -10.20602424 3.585655488 1.000252826 0.812507886 0.246002053 0.097038161 28244041.63 42644706.14 82741.53765 0.023037073 6.22E-11 10.20602424 -0.187744941 SEAEEGEVRT(ph)PTK ddPTM_HeLa_A486_30min_R1 4 SEAEEGEVRTPTK 13 1 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SEAEEGEVRT(1)PTK;SEAEEGEVRT(0.993)PT(0.007)K;SEAEEGEVRT(0.846)PT(0.154)K;SEAEEGEVRT(0.998)PT(0.002)K ;;; 195.38 5.14E-18 7403120000 3641490 3414630 2028700 1617400 3757250 4010730 4472600 4435240 2929940 4975160 TRUE FALSE FALSE 3386240.356 3144042.283 2814266.97 3765388.939 3285980.67 3515926.911 3353508.174 3425432.673 3183909.558 3729347.553 0.907998063 0.843054244 0.754627165 1.00966426 0.881114089 0.942772659 0.899221144 0.918507225 0.853744392 1 21.83049182 -5.259409945 24.99979949 0.923195266 0.836009272 0.358317754 0.057275813 208.1368857 2563942.46 0.015308553 0.024938986 5.50E-06 5.259409945 -0.087185994 SEAHLTELLEEICDR ddPTM_HeLa_A485_30min_R1 1 SEAHLTELLEEICDR 15 0 Q9Y2B0;F8W1K5;F8VXJ7;F8W031 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 0 171.76 9.63E-12 21452000 18334 26142 28958 12000 37258 19127 27133 27981 23632 21791 FALSE FALSE TRUE 22412.33505 29199.07949 39670.76924 12655.52961 33548.4627 20128.46014 21335.81289 21118.61588 28374.72563 16358.90473 1.370038851 1.784904306 2.425025996 0.773617172 2.050776824 1.230428349 1.304232358 1.290955368 1.734512554 1 13.99778854 -5.259241471 24.99946032 1.376248378 1.852481125 0.248348796 0.41072118 297.6941886 3386013.458 0.109272617 0.178088688 5.51E-06 5.259241471 0.476232747 SEAHLTELLEEICDR ddPTM_HeLa_A486_30min_R1 1 SEAHLTELLEEICDR 15 0 Q9Y2B0;F8W1K5;F8VXJ7;F8W031 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 0 145.69 2.75E-07 16356000 16129 19826 20478 4233.6 23621 18037 17293 20301 18114 12136 FALSE FALSE TRUE 14998.44039 18254.91555 28407.63002 9856.034754 20658.23392 15811.77833 12966.10849 15678.90547 19684.1361 9097.066608 1.648711726 2.006681532 3.122724197 1.083429987 2.270867612 1.738118342 1.425306536 1.72351222 2.163789379 1 13.1511857 -5.281733958 24.97121273 1.682203271 2.234103684 0.234098562 0.515486392 1262.634905 1553590.628 0.142417052 0.211532055 5.23E-06 5.281733958 0.551900413 SEALS(ph)SVLDQEEAMEIK ddPTM_HeLa_A485_30min_R1 3 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEALS(0.987)S(0.013)VLDQEEAMEIK;SEALS(0.985)S(0.015)VLDQEEAMEIK;SEALS(0.99)S(0.01)VLDQEEAMEIK ;; 221.24 4.04E-33 29100000 77613 73811 62671 104653 89371 69410 115828 99537 68168 156416 TRUE FALSE FALSE 94877.74409 82442.55438 85855.61086 110369.9284 80472.90944 73044.20027 91080.40157 75125.39468 81848.69233 117424.3698 0.807990234 0.702090669 0.731156667 0.939923532 0.685316937 0.62205316 0.775651611 0.639776861 0.697033269 1 16.84137233 -10.07756325 4.438278536 1.000020855 0.732322007 0.457562492 0.087060562 60559211.41 1.200519662 13341.0571 0.021718025 8.36E-11 10.07756325 -0.267698847 SEALS(ph)SVLDQEEAMEIK ddPTM_HeLa_A486_30min_R1 1 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEALS(0.982)S(0.018)VLDQEEAMEIK 139.67 2.14E-06 31836000 39616 35659 20618 21056 36839 48741 52231 55193 33115 56799 TRUE FALSE FALSE 36839.12298 32833.25097 28601.84177 49019.43211 32218.30911 42727.83098 39162.25136 42626.75875 35985.43486 42576.1607 0.865252347 0.771165141 0.67178067 1.151335191 0.756721803 1.003562329 0.919816412 1.001188413 0.845201499 1 15.37775824 -5.237046042 24.98688601 0.946448613 0.769575972 0.378583586 0.108065563 814.7259265 834549.1045 0.027487701 0.047579403 5.79E-06 5.237046042 -0.176872641 SEALSS(ph)VLDQEEAMEIK ddPTM_HeLa_A485_30min_R1 2 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEALS(0.002)S(0.998)VLDQEEAMEIK;SEALS(0.02)S(0.98)VLDQEEAMEIK ; 343.47 1.78E-92 56476000 90014 88491 65191 118863 98697 96268 132859 122344 71238 149291 TRUE FALSE FALSE 110037.3038 98839.25268 89307.86372 125356.1847 88870.38013 101308.4436 104472.5893 92338.94217 85534.81317 112075.5012 0.981814068 0.881898824 0.796854467 1.11849765 0.792950995 0.90393032 0.932162588 0.823899436 0.76318921 1 16.77411143 -7.260740007 24.87134459 0.845158243 0.912248422 0.044099315 0.103662654 159.8552351 5685097.384 0.050151747 0.026721674 5.49E-08 7.260740007 0.06709018 SEALSS(ph)VLDQEEAMEIK ddPTM_HeLa_A486_30min_R1 2 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEALS(0.015)S(0.985)VLDQEEAMEIK;SEALS(0.093)S(0.907)VLDQEEAMEIK ; 156.5 1.73E-08 55025000 213264 204616 120175 93131 184720 243668 287260 264720 165035 303110 TRUE FALSE FALSE 198315.2949 188401.483 166709.9784 216813.6746 161550.6952 213606.7196 215384.5097 204449.0348 179340.3667 227209.2831 0.872830952 0.829197999 0.733728729 0.95424655 0.711021543 0.940132008 0.947956469 0.899826944 0.789317955 1 17.79366225 -6.324704949 24.99982061 0.911217761 0.823345891 0.256522436 0.080822904 334.7254526 132267.8979 0.027485667 0.024240084 4.73E-07 6.324704949 -0.08787187 SEANDAVNS(ph)STK ddPTM_HeLa_A485_30min_R1 4 SEANDAVNSSTK 12 0 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 0 SEANDAVNS(0.96)S(0.028)T(0.011)K;SEANDAVNS(0.997)S(0.003)TK;SEANDAVNS(0.997)S(0.003)TK;SEANDAVNS(0.982)S(0.018)TK ;;; 251.28 1.28E-41 1075290000 2190110 1974200 1213600 2475320 1632310 1835230 2496500 2125180 1391580 3047480 TRUE FALSE FALSE 2677292.414 2205065.517 1662561.142 2610540.464 1469791.485 1931319.805 1963102.38 1603976.273 1670857.342 2287799.321 1.170247928 0.963836949 0.726707595 1.141070565 0.642447732 0.844182349 0.858074553 0.701100074 0.730333874 1 21.12552908 -1.000000521 0.707219932 0.807936957 48.77974086 0.338782009 0.143142746 324.7594286 1.671043928 0.053728353 24663.96389 0.09999988 1.000000521 47.9718039 SEANDAVNS(ph)STK ddPTM_HeLa_A486_30min_R1 4 SEANDAVNSSTK 12 0 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 0 SEANDAVNS(0.968)S(0.03)T(0.002)K;SEANDAVNS(0.909)S(0.062)T(0.029)K;SEANDAVNS(0.998)S(0.002)TK;SEANDAVNS(0.499)S(0.499)T(0.002)K ;;; 347.55 8.95E-87 1675000000 2005230 1840690 773870 656380 1154010 1869180 1946150 1725660 1456500 2905575.2 TRUE FALSE FALSE 1864673.732 1694827.021 1073533.189 1528085.812 1009263.305 1638579.576 1459202.686 1332764.889 1582750.593 2178000.258 0.856140271 0.778157401 0.492898559 0.701600381 0.463389892 0.752332131 0.669973606 0.611921364 0.726698992 1 21.05457269 -8.107686255 5.770384373 0.999995118 0.661528457 0.430920198 0.114703296 1.181920883 62.64848213 0.111042549 0.028839033 7.80E-09 8.107686255 -0.338466661 SEANDAVNS(ph)STKEEK ddPTM_HeLa_A486_30min_R1 1 SEANDAVNSSTKEEK 15 1 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 0 SEANDAVNS(0.926)S(0.058)T(0.015)KEEK 103.41 8.77E-05 0 199300 185350 104430 110340 165950 227970 307970 270840 170580 323150 TRUE FALSE FALSE 185330.0992 170662.191 144868.0927 256877.0963 145135.0036 199845.3792 230912.6486 209175.6444 185366.0117 242231.1366 0.765096105 0.704542749 0.598057272 1.060462746 0.599159157 0.825019368 0.953274017 0.863537394 0.765244363 1 17.8860248 -4.063107391 0.04959076 1.432450473 9.06E-07 0.234224065 0.131800543 377.7891039 2.774406407 26.86048557 57.51974219 8.65E-05 4.063107391 -1.432449567 SEANDAVNS(ph)STKEEKGEEKPDTK ddPTM_HeLa_A485_30min_R1 1 SEANDAVNSSTKEEKGEEKPDTK 23 3 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 SEANDAVNS(0.96)S(0.02)T(0.02)KEEKGEEKPDTK 188.8 5.00E-21 611270000 175220 82138 35476 618220 221560 205910 554420 487920 107890 991660 TRUE FALSE FALSE 214197.0845 91743.32459 48600.04868 651991.7932 199500.7085 216691.1292 435963.6378 368256.855 129542.5334 744457.4121 0.287722415 0.123235155 0.06528251 0.875794616 0.267981358 0.291072566 0.585612596 0.494664771 0.174009327 1 19.50582979 -14 0.185066567 3.598916807 0.238837676 0.410170653 0.231507614 141.1035303 1.369777381 135.7436111 0.691325358 1.00E-14 14 -3.360079131 SEAPAEVTHFS(ph)PK ddPTM_HeLa_A485_30min_R1 6 SEAPAEVTHFSPK 13 0 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 0 SEAPAEVTHFS(1)PK;SEAPAEVTHFS(1)PK;SEAPAEVTHFS(1)PK;SEAPAEVT(0.011)HFS(0.989)PK;SEAPAEVTHFS(1)PK;SEAPAEVTHFS(1)PK ;;;;; 190.11 1.39E-17 9246553000 7469840 7030170 5226620 11934920 9038120 7797160 12356380 11781920 6230060 14303010 TRUE FALSE FALSE 9131480.137 7852287.227 7160164.236 12586894.46 8138253.038 8205407.241 9716338.471 8892385.647 7480375.897 10737532.83 0.850426283 0.731293431 0.666835142 1.172233385 0.757925788 0.764179944 0.904894879 0.828159111 0.696656859 1 23.35615921 -11.5092113 2.270773207 3.553376927 0.82186283 0.136440663 0.136322252 5653756.416 713115.7794 76301063.96 0.035492783 3.10E-12 11.5092113 -2.731514097 SEAPAEVTHFS(ph)PK ddPTM_HeLa_A486_30min_R1 4 SEAPAEVTHFSPK 13 0 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 0 SEAPAEVTHFS(1)PK;SEAPAEVT(0.004)HFS(0.996)PK;SEAPAEVT(0.024)HFS(0.976)PK;SEAPAEVTHFS(1)PK ;;; 179.17 3.62E-17 9592700000 8836600 8355300 4241350 4345090 7841100 9558800 12420300 11175400 6510600 14037300 TRUE FALSE FALSE 8217199.972 7693195.599 5883714.307 10115589.11 6857596.123 8379532.443 9312609.571 8631005.377 7074944.05 10522268.71 0.780934245 0.731134683 0.559167844 0.961350578 0.651722201 0.796361761 0.885038182 0.820260878 0.672378196 1 23.32694246 -14 0.181292242 1.944036907 0.717451946 0.285335253 0.111212235 174.3770787 1.68206762 59.57320384 0.335718904 1.00E-14 14 -1.226584961 SEAS(ph)PHENTNHKS(ph)PHK ddPTM_HeLa_A486_30min_R1 1 SEASPHENTNHKSPHK 16 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 2 0 SEAS(1)PHENTNHKS(1)PHK 162.65 3.11E-12 112310000 71336 75209 36047 35818 64264 109880 120230 96582 74454 97878 TRUE FALSE FALSE 66335.71478 69249.16493 50005.36377 83386.11414 56203.40988 96324.12278 90147.18234 74592.38697 80907.73267 73368.71172 0.904141741 0.94385145 0.681562516 1.136535073 0.766040572 1.31287739 1.228687001 1.016678434 1.102755259 1 16.16287733 -6.254672371 24.98854636 1.139272482 0.892130174 0.433648717 0.140243982 522.7143872 1930230.382 0.046041851 0.045043105 5.56E-07 6.254672371 -0.247142307 SEAS(ph)PHENTNHKS(ph)PHKNSISLK ddPTM_HeLa_A485_30min_R1 1 SEASPHENTNHKSPHKNSISLK 22 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 2 0 SEAS(1)PHENT(0.33)NHKS(0.663)PHKNS(0.007)ISLK 131.42 1.10E-06 270860000 135930 104710 65206 131620 173690 141580 216400 224470 119730 247370 TRUE FALSE FALSE 166167.1595 116954.9236 89328.41285 138810.0673 156396.8137 148992.9099 170164.3722 169418.3805 143758.7128 185705.2115 0.894789964 0.629788053 0.481022649 0.747475347 0.842177839 0.802308716 0.916314468 0.912297394 0.774123201 1 17.50265478 -5.663578418 3.316151065 0.870550585 0.658697896 0.410019899 0.111588088 0.240091175 5.214864951 0.035033486 0.045975659 2.17E-06 5.663578418 -0.21185269 SEASPHENT(ph)NHKSPHK ddPTM_HeLa_A485_30min_R1 2 SEASPHENTNHKSPHK 16 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEAS(0.001)PHENT(0.981)NHKS(0.018)PHK;SEASPHENT(0.668)NHKS(0.332)PHK ; 201.52 1.75E-24 1168280000 263560 225230 163988 316000 337800 239780 313000 340910 211734 431600 TRUE FALSE FALSE 322188.0127 251568.6893 224653.9853 333262.2798 304167.4459 252334.51 246124.993 257301.288 254227.0717 324010.063 0.994376563 0.776422457 0.693354963 1.028555338 0.938759257 0.778786028 0.759621447 0.794115114 0.784627086 1 18.3056791 -6.279592612 24.68305993 0.806574099 0.877374367 0.060403802 0.111979884 1990.577341 2706590.443 0.040352311 0.035660427 5.25E-07 6.279592612 0.070800267 SEASPHENT(ph)NHKSPHK ddPTM_HeLa_A486_30min_R1 1 SEASPHENTNHKSPHK 16 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEAS(0.001)PHENT(0.582)NHKS(0.417)PHK 75.97 0.0027281 73775000 90055 71076 44202 11012 75402 114420 112250 100100 81137 80616 TRUE FALSE FALSE 83742.60954 65443.67891 61318.19817 25636.49252 65944.37806 100304.0237 84163.86274 77309.41517 88170.02049 60429.22888 1.385796428 1.08298054 1.014710916 0.424239941 1.091266251 1.659859402 1.392767446 1.279338105 1.459062479 1 15.88295891 -6.013568864 24.60209066 1.377573017 0.958523856 0.311600734 0.269339208 611.0973112 1107998.944 0.089460729 0.093335877 9.69E-07 6.013568864 -0.41904916 SEASPHENTNHKS(ph)PHK ddPTM_HeLa_A485_30min_R1 1 SEASPHENTNHKSPHK 16 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEASPHENTNHKS(1)PHK 181.32 7.26E-18 206830000 165370 101220 75383 256370 195170 132810 189730 145810 139420 366010 TRUE FALSE FALSE 202155.986 113056.7985 103270.3086 270374.8439 175738.1895 139763.7262 149192.6355 110049.8689 167400.3152 274770.4429 0.735726826 0.411459098 0.37584213 0.98400265 0.639581855 0.508656334 0.542971922 0.400515673 0.609236981 1 18.0678673 -11.25325739 1.911856578 2.301601417 0.573147269 0.346436881 0.173462944 4752073.654 729644.6041 26675372.69 0.046779218 5.58E-12 11.25325739 -1.728454148 SEASPHENTNHKS(ph)PHK ddPTM_HeLa_A486_30min_R1 3 SEASPHENTNHKSPHK 16 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEASPHENTNHKS(1)PHK;SEASPHENTNHKS(1)PHK;SEASPHENTNHKS(1)PHK ;; 262.17 5.59E-51 1110560000 1059680 850720 502170 157517 821270 1423340 1346330 1157670 1019820 1005800 TRUE FALSE FALSE 985401.9042 783305.8489 696623.6726 366707.5365 718258.6586 1247742.782 1009463.994 894093.8128 1108218.819 753941.1333 1.307001118 1.038948287 0.923976212 0.486387491 0.952672068 1.654960483 1.338916196 1.185893398 1.469900991 1 19.52409236 -6.133405146 8.551986035 1.341451471 0.91762964 0.380886075 0.24659431 0.325444958 21.04185354 0.08425203 0.084318498 7.36E-07 6.133405146 -0.423821831 SEASPHENTNHKS(ph)PHKNSISLK ddPTM_HeLa_A485_30min_R1 3 SEASPHENTNHKSPHKNSISLK 22 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEASPHENT(0.011)NHKS(0.989)PHKNSISLK;SEASPHENT(0.078)NHKS(0.922)PHKNSISLK;SEASPHENT(0.002)NHKS(0.998)PHKNSISLK ;; 153.84 4.41E-10 1942140000 1559270 1237010 697160 1005640 1885810 1410760 2162700 2142270 1222200 1983620 TRUE FALSE FALSE 1906124.232 1381667.559 955068.4952 1060575.567 1698052.135 1484625.212 1700621.477 1616874.924 1467484.329 1489140.04 1.280016776 0.927829164 0.641355729 0.712206736 1.140290429 0.996968164 1.142015816 1.085777617 0.985457573 1 20.506048 -5.778675594 24.99897664 1.063814524 0.875243525 0.195197307 0.165836716 389.6538388 565141.9357 0.054743991 0.062219702 1.66E-06 5.778675594 -0.188570999 SECDS(ph)S(ph)PEPK ddPTM_HeLa_A485_30min_R1 3 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SECDS(1)S(1)PEPK;SECDS(1)S(1)PEPK;SECDS(1)S(1)PEPK ;; 139.32 4.29E-05 2826320000 4448030 2944600 2558610 8543930 5542380 3609110 6669320 5340660 3327230 10534130 TRUE FALSE FALSE 5437478.928 3288945.355 3505146.312 9010663.262 4990561.187 3798077.419 5244365.299 4030854.761 3994974.542 7908165.257 0.687577807 0.41589234 0.443231293 1.139412616 0.631064352 0.480272895 0.663158284 0.509707958 0.505170847 1 22.91491159 -10.33079378 3.790186406 1.001133831 0.609094262 0.259957128 0.19822033 284613177.8 716538277.3 4069418.555 0.051315748 4.67E-11 10.33079378 -0.392039569 SECDS(ph)S(ph)PEPK ddPTM_HeLa_A486_30min_R1 4 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SECDS(1)S(1)PEPK;SECDS(1)S(1)PEPK;S(0.005)ECDS(0.999)S(0.997)PEPK;SECDS(1)S(1)PEPK ;;; 216.97 1.56E-16 3617420000 3471120 4384300 1948970 2944070 3732480 5112940 6783660 5923100 3157940 7038660 TRUE FALSE FALSE 3227812.413 4036872.101 2703663.379 6853943.745 3264317.554 4482157.447 5086316.518 4574539.43 3431672.782 5276133.722 0.611776081 0.765119368 0.512432687 1.299046633 0.618695 0.849515513 0.964023428 0.867024922 0.650414292 1 22.3310497 SECDS(ph)SPEPK ddPTM_HeLa_A485_30min_R1 1 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SECDS(0.825)S(0.175)PEPK 155 2.22E-06 276860000 431520 360410 276110 766040 524380 406750 684990 593490 349680 960070 TRUE FALSE FALSE 527510.1353 402556.8143 378254.5789 807886.8255 472170.886 428046.801 538636.2906 447935.6469 419857.5685 720742.2178 0.731898482 0.558530921 0.524812575 1.120909537 0.655117564 0.593897222 0.747335562 0.621492173 0.582535001 1 19.45912383 -10.62550308 2.583729227 1.034109761 0.683284781 0.258403121 0.161681963 24063567.72 21029961.16 5503787.26 0.043957205 2.37E-11 10.62550308 -0.35082498 SECDS(ph)SPEPK ddPTM_HeLa_A486_30min_R1 3 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SECDS(0.613)S(0.387)PEPK;SECDS(0.681)S(0.319)PEPK;SECDS(0.597)S(0.403)PEPK ;; 191.04 5.70E-10 4325970000 7461670 8355490 4775570 4868140 7622740 10307530 13219480 12313740 6740060 14032600 TRUE FALSE FALSE 6938645.465 7693370.542 6624798.598 11333275.94 6666624.87 9035891.748 9911826.283 9510170.209 7324293.828 10518745.62 0.659645714 0.731396197 0.629808804 1.07743607 0.633785159 0.859027499 0.942301168 0.904116379 0.696308675 1 23.32645934 -2.503127252 0.288830096 0.90511087 8.12E-29 0.240176477 0.13546234 34.23944874 1.042417042 0.146634242 13.27700419 0.003139589 2.503127252 -0.90511087 SECDSS(ph)PEPK ddPTM_HeLa_A485_30min_R1 3 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SECDS(0.001)S(0.999)PEPK;SECDS(0.075)S(0.925)PEPK;SECDS(0.048)S(0.952)PEPK ;; 277.63 7.02E-34 7096960000 10503540 7967440 6365940 17854550 12593190 9378250 16051430 14014210 8275900 21978110 TRUE FALSE FALSE 12840016.24 8899162.8 8720966.115 18829898.86 11339367.79 9869280.668 12621910.85 10577203.02 9936797.219 16499371.65 0.778212438 0.53936374 0.528563529 1.141249452 0.687260583 0.598161001 0.764993426 0.64106702 0.602253069 1 23.97590775 -11.25660147 2.294542152 2.170409015 0.698353868 0.224476144 0.168451824 13107303.53 2587010.823 79292055.75 0.043433794 5.54E-12 11.25660147 -1.472055147 SECDSS(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SECDS(0.022)S(0.978)PEPK;SECDS(0.472)S(0.528)PEPK ; 240.8 6.48E-21 4985420000 5832430 6886440 3242090 4212980 6186990 7878330 10456500 9393840 4918860 10297000 TRUE FALSE FALSE 5423606.776 6340733.414 4497514.074 9808030.352 5410960.023 6906381.746 7840173.102 7255067.698 5345230.745 7718564.178 0.702670426 0.821491312 0.582687916 1.270706588 0.70103194 0.894775451 1.015755382 0.939950427 0.692516201 1 22.87990107 SEDARSS(ph)PSQR ddPTM_HeLa_A485_30min_R1 1 SEDARSSPSQR 11 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;E5RFR3;E5RG53 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 SEDARS(0.03)S(0.862)PS(0.108)QR 107.39 0.0088919 81845000 41959 153770 56466 35221 86932 206000 174580 826230 88778 41535 TRUE FALSE FALSE 51292.63479 171752.0639 77355.12315 37145.03405 78276.74484 216785.8415 137279.5568 623595.797 106594.9303 31181.0889 1.644991776 5.508212508 2.480834566 1.191268021 2.510391639 6.952478221 4.402654355 19.99916677 3.418576261 1 14.92838369 -6.591694455 2.002340535 8.987586535 2.784410224 0.139101548 4.963157982 0.484783465 3.945866233 2.20677689 1.604655313 2.56E-07 6.591694455 -6.203176311 SEDDSAKFDS(ph)NEEDSASVFSPSFGLK ddPTM_HeLa_A485_30min_R1 6 SEDDSAKFDSNEEDSASVFSPSFGLK 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 SEDDS(0.181)AKFDS(0.818)NEEDSASVFSPSFGLK;SEDDS(0.005)AKFDS(0.995)NEEDSASVFSPSFGLK;S(0.082)EDDS(0.063)AKFDS(0.852)NEEDS(0.002)ASVFSPSFGLK;S(0.004)EDDS(0.004)AKFDS(0.966)NEEDS(0.025)AS(0.001)VFSPSFGLK;S(0.002)EDDS(0.067)AKFDS(0.929)NEEDS(0.001)AS(0.001)VFSPSFGLK;S(0.011)EDDS(0.172)AKFDS(0.721)NEEDS(0.043)AS(0.049)VFS(0.004)PSFGLK ;;;;; 193.75 4.24E-21 2715071000 442280 349082 223446 768386 492133 468502 832500 870521 364307 1069009 TRUE FALSE FALSE 540663.6602 389904.1033 306107.9738 810360.9815 443134.5105 493032.0403 654629.5741 657024.3598 437420.0733 802524.73 0.673703426 0.485846839 0.381431204 1.009764499 0.552175521 0.614351212 0.81571265 0.818696715 0.545054946 1 19.61418632 -14 0.081690787 2.084785397 0.337154004 0.277871332 0.172821619 324.0801045 1.865221011 63.46119578 5.631859447 1.00E-14 14 -1.747631393 SEDDSAKFDS(ph)NEEDSASVFSPSFGLK ddPTM_HeLa_A486_30min_R1 5 SEDDSAKFDSNEEDSASVFSPSFGLK 26 1 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 SEDDS(0.001)AKFDS(0.999)NEEDSASVFSPSFGLK;SEDDS(0.019)AKFDS(0.981)NEEDSASVFSPSFGLK;SEDDS(0.028)AKFDS(0.971)NEEDSASVFSPSFGLK;SEDDS(0.01)AKFDS(0.99)NEEDSASVFSPSFGLK;SEDDS(0.001)AKFDS(0.998)NEEDS(0.001)ASVFSPSFGLK ;;;; 252.47 3.42E-62 3567870000 1289170 1272030 512398 901680 980930 1539410 2229450 1842020 1110740 2429530 TRUE FALSE FALSE 1198805.84 1171229.71 710812.2281 2099156.608 857892.6126 1349493.246 1671618.029 1422632.257 1207019.838 1821159.874 0.65826502 0.64312295 0.390307429 1.152648177 0.471069358 0.741007566 0.917886481 0.781168242 0.66277533 1 20.79642615 -13.99998285 0.042139969 2.272337301 3.44E-08 0.185705171 0.199306664 1304.369466 4.088551462 204.7493541 57.66989641 1.00E-14 13.99998285 -2.272337267 SEDES(ph)ET(ph)EDEEEK ddPTM_HeLa_A486_30min_R1 2 SEDESETEDEEEK 13 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 SEDES(1)ET(1)EDEEEK;SEDES(1)ET(1)EDEEEK ; 354.93 2.11E-94 1265280000 1826880 1495090 491610 856930 787700 1544080 1970340 1465770 1033770 3387900 TRUE FALSE FALSE 1698825.146 1376613.623 681974.5578 1994976.347 688899.321 1353587.109 1477340.092 1132046.169 1123378.016 2539547.788 0.668947894 0.542070376 0.26854173 0.785563617 0.271268501 0.533003204 0.581733527 0.44576683 0.442353564 1 21.27614019 -10.37983125 3.179478537 1.005308614 0.501343985 0.488198369 0.152215506 73600051.59 97325589.31 3606370.905 0.035422747 4.17E-11 10.37983125 -0.503964629 SEDES(ph)ET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_A485_30min_R1 2 SEDESETEDEEEKSQEDQEQK 21 1 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 S(0.001)EDES(0.999)ET(1)EDEEEKSQEDQEQK;SEDES(1)ET(1)EDEEEKSQEDQEQK ; 180.37 3.91E-19 3285200000 1482360 763270 455350 3566800 1226570 1091250 2470000 2052610 724050 4403200 TRUE FALSE FALSE 1812105.868 852527.7869 623802.9137 3761645.252 1104448.384 1148386.163 1942264.322 1549204.179 869360.1936 3305563.275 0.548198814 0.257906964 0.188713046 1.137974058 0.334118059 0.347410129 0.587574389 0.468665716 0.262999108 1 21.6564647 -10.32829862 3.088682381 1.004422288 0.462442448 0.283247429 0.257998768 59704501.52 78256412 2469295.319 0.065013018 4.70E-11 10.32829862 -0.54197984 SEDES(ph)ET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_A486_30min_R1 2 SEDESETEDEEEKSQEDQEQK 21 1 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 SEDES(1)ET(1)EDEEEKSQEDQEQK;SEDES(1)ET(1)EDEEEKSQEDQEQK ; 293.2 5.39E-87 3079600000 2848600 2492590 875420 3653500 1860110 4104600 6451200 5291700 2136390 8892700 TRUE FALSE FALSE 2648927.85 2295068.091 1214406.069 8505532.638 1626797.659 3598216.185 4837041.526 4086895.427 2321574.005 6665910.038 0.397384278 0.34429929 0.182181587 1.275974711 0.244047347 0.539793691 0.725638585 0.613103898 0.348275628 1 22.66837042 -14 0.144945411 2.514270633 0.382178228 0.183916561 0.299172808 249.3682298 2.178570017 110.9574351 1.675340175 1.00E-14 14 -2.132092405 SEDES(ph)ET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_A485_30min_R1 5 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 S(0.01)EDES(0.99)ET(1)EDEEEKSQEDQEQKR;SEDES(1)ET(1)EDEEEKSQEDQEQKR;SEDES(1)ET(1)EDEEEKSQEDQEQKR;SEDES(1)ET(0.988)EDEEEKS(0.012)QEDQEQKR;SEDES(0.994)ET(0.982)EDEEEKS(0.024)QEDQEQKR ;;;; 158.2 1.83E-10 16209310000 6725300 3522930 2306970 14554560 6245100 6214090 13295780 11034650 3922510 19193650 TRUE FALSE FALSE 8221319.783 3934906.018 3160414.204 15349638.76 5623315.916 6539450.144 10455027.99 8328384.786 4709721.778 14409026.29 0.570567339 0.273086185 0.219335723 1.065279392 0.390263423 0.453844001 0.725588793 0.577997751 0.326859129 1 23.78046951 -11.52628162 2.243138072 8.349390789 0.515113548 0.279004423 0.235553577 7097402.168 670288.5006 264279634 0.059699986 2.98E-12 11.52628162 -7.834277241 SEDES(ph)ET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_A486_30min_R1 6 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 0 SEDES(1)ET(1)EDEEEKSQEDQEQKR;SEDES(1)ET(1)EDEEEKSQEDQEQKR;S(0.002)EDES(0.998)ET(0.996)EDEEEKS(0.004)QEDQEQKR;SEDES(1)ET(0.998)EDEEEKS(0.002)QEDQEQKR;SEDES(1)ET(1)EDEEEKSQEDQEQKR;SEDES(1)ET(1)EDEEEKSQEDQEQKR ;;;;; 221.6 5.26E-36 17254010000 5438540 4677120 1551585 6028420 3837605 7236370 11539130 9564530 3654571 14216350 TRUE FALSE FALSE 5057326.431 4306487.977 2152400.265 14034466.42 3356256.797 6343620.243 8651917.626 7386895.311 3971352.157 10656483.43 0.474577422 0.404119052 0.201980351 1.316988528 0.314949751 0.595282702 0.811892374 0.693183203 0.372670045 1 23.3452281 -14 0.057717924 2.285282221 2.37E-12 0.145172377 0.302389481 906.6704352 3.825884878 174.815631 31.09251065 1.00E-14 14 -2.285282221 SEDES(ph)ETEDEEEK ddPTM_HeLa_A485_30min_R1 2 SEDESETEDEEEK 13 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(1)ETEDEEEK;SEDES(1)ETEDEEEK ; 390.54 5.75E-125 1255750000 798190 797000 426470 1222810 545120 742840 931770 836570 512280 1399130 TRUE FALSE FALSE 975744.6118 890202.217 584238.9999 1289609.014 490845.9388 781733.9538 732689.7276 631399.8958 615089.8971 1050352.64 0.928968591 0.847526995 0.556231286 1.227786712 0.467315376 0.74425857 0.697565465 0.601131346 0.585603228 1 20.00244234 -5.803885045 24.99999977 0.66652914 0.863239679 0.198008653 0.200109169 234.8693813 138334.0312 0.059108426 0.067023183 1.57E-06 5.803885045 0.196710539 SEDES(ph)ETEDEEEK ddPTM_HeLa_A486_30min_R1 2 SEDESETEDEEEK 13 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(1)ETEDEEEK;SEDES(0.969)ET(0.031)EDEEEK ; 447.27 5.05E-183 995620000 1099610 866490 261180 392010 530710 915720 1036910 911010 763830 2175000 TRUE FALSE FALSE 1022533.017 797826.1767 362315.8906 912619.0911 464143.4031 802747.7768 777464.1507 703592.9102 830039.3994 1630365.843 0.627180103 0.48935408 0.222229809 0.559763378 0.284686658 0.492372789 0.476864842 0.431555232 0.509112358 1 20.6367643 -8.521795265 1.676820529 1.000058198 0.441516516 0.679285483 0.112961344 2.061340061 5.994522152 0.105662023 0.029948269 3.01E-09 8.521795265 -0.558541682 SEDES(ph)ETEDEEEKSQEDQEQK ddPTM_HeLa_A486_30min_R1 4 SEDESETEDEEEKSQEDQEQK 21 1 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(0.64)ET(0.36)EDEEEKSQEDQEQK;SEDES(0.825)ET(0.175)EDEEEKSQEDQEQK;SEDES(0.984)ET(0.016)EDEEEKSQEDQEQK;SEDES(0.988)ET(0.012)EDEEEKSQEDQEQK ;;; 345.69 4.78E-128 3293820000 1263280 1069980 313475 1088830 788390 1705400 2278880 2091110 925370 3712420 TRUE FALSE FALSE 1174730.596 985190.888 434860.9152 2534851.266 689502.7748 1495005.087 1708680.12 1615009.902 1005581.817 2782805.868 0.422138895 0.354027889 0.156267068 0.910897629 0.247772503 0.537229386 0.61401341 0.58035306 0.36135536 1 21.40810884 -14 0.179683392 3.123966362 0.361080172 0.392329932 0.200970309 138.0435662 1.327720899 104.9747527 0.617697079 1.00E-14 14 -2.76288619 SEDES(ph)ETEDEEEKSQEDQEQKR ddPTM_HeLa_A485_30min_R1 2 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(0.975)ET(0.025)EDEEEKSQEDQEQKR;SEDES(0.786)ET(0.214)EDEEEKSQEDQEQKR ; 249.39 1.18E-47 2739460000 740370 494700 373760 1894050 832020 899030 1594180 1380000 622630 2694720 TRUE FALSE FALSE 905062.7523 552550.8617 512029.3775 1997517.156 749181.1674 946101.8206 1253570.42 1041552.836 747586.1299 2022975.897 0.447391763 0.27313764 0.253107008 0.987415203 0.370336181 0.467678247 0.619666513 0.514861713 0.36954772 1 20.9480477 -14 0.32674031 6.075925585 0.46230495 0.375167811 0.200439811 389.3297179 3.404781813 1371.258411 0.177978671 1.00E-14 14 -5.613620635 SEDES(ph)ETEDEEEKSQEDQEQKR ddPTM_HeLa_A486_30min_R1 2 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(0.516)ET(0.483)EDEEEKS(0.001)QEDQEQKR;S(0.005)EDES(0.941)ET(0.055)EDEEEKSQEDQEQKR ; 277.39 3.90E-73 2480310000 645030 537910 168274 585730 511780 963690 1244980 1065780 510355 1831590 TRUE FALSE FALSE 599816.7279 495284.0526 233434.1993 1363609.041 447587.7802 844799.7259 933472.8359 823125.1598 554592.9823 1372947.942 0.436882353 0.360744961 0.170024072 0.99319792 0.326004917 0.615318105 0.679904028 0.599531224 0.403943198 1 20.38884549 -14 0.110725162 2.451313442 0.255805956 0.328095075 0.214737197 202.3294614 1.484366919 67.63262509 2.635168894 1.00E-14 14 -2.195507486 SEDESET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_A485_30min_R1 1 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(0.022)ET(0.97)EDEEEKS(0.008)QEDQEQKR 109.03 0.00075361 1230200000 246050 198790 133010 716520 278920 298520 550680 506230 213080 933520 TRUE FALSE FALSE 300782.9736 222036.7613 182215.934 755661.6733 251149.7455 314150.0456 433022.7194 382076.2988 255843.2015 700810.6442 0.42919293 0.316828466 0.260007372 1.078267974 0.358370335 0.448266658 0.617888331 0.545191917 0.365067517 1 19.41866516 -11.32116251 2.304914286 3.768970635 0.496531342 0.323514715 0.220677312 20542738.07 2150661.329 297564068.4 0.055465303 4.77E-12 11.32116251 -3.272439293 SEDESETEDEEEKS(ph)QEDQEQKR ddPTM_HeLa_A486_30min_R1 1 SEDESETEDEEEKSQEDQEQKR 22 2 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(0.058)ET(0.352)EDEEEKS(0.591)QEDQEQKR 158.45 1.35E-10 1561100000 416560 330140 100300 363150 337440 534130 727060 607400 259560 1108800 TRUE FALSE FALSE 387361.2951 303978.5041 139138.8461 845431.5526 295115.1287 468234.4712 545141.8979 469108.2794 282058.8698 831149.2629 0.466055031 0.365732748 0.167405365 1.017183784 0.355068749 0.563357861 0.655889288 0.564409187 0.339360067 1 19.66474806 -14 0.270592697 4.341768023 0.471107747 0.311096784 0.219927558 267.5971883 2.601647634 500.8614816 0.270525589 1.00E-14 14 -3.870660276 SEDGYHS(ph)DGDYGEHDYR ddPTM_HeLa_A486_30min_R1 1 SEDGYHSDGDYGEHDYR 17 0 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 1 0 SEDGYHS(1)DGDYGEHDYR 235.98 2.35E-42 676830000 506360 589830 512640 187880 618070 589430 571530 589520 530910 603040 TRUE FALSE FALSE 470866.7788 543089.7227 711147.937 437394.1349 540545.8973 516712.1195 428527.149 455299.1651 576929.7063 452034.8589 1.041660327 1.201433279 1.573214815 0.967611516 1.195805781 1.14308025 0.947995803 1.00722136 1.276294726 1 18.78607451 SEDGYHS(ph)DGDYGEHDYRHDISDER ddPTM_HeLa_A485_30min_R1 3 SEDGYHSDGDYGEHDYRHDISDER 24 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 1 0 SEDGYHS(1)DGDYGEHDYRHDISDER;SEDGYHS(1)DGDYGEHDYRHDISDER;SEDGYHS(1)DGDYGEHDYRHDISDER ;; 208.86 4.57E-29 4469940000 841924 1259190 1208070 752370 1476050 1251300 1413040 1753040 1137520 1294610 TRUE FALSE FALSE 1029207.089 1406441.317 1654985.365 793470.068 1329089.279 1316816.133 1111132.461 1323104.191 1365809.83 971887.5525 1.05897754 1.4471235 1.702856838 0.81642168 1.367534007 1.354905853 1.143272653 1.361375797 1.405316723 1 19.89042988 -11.20397736 2.305606207 0.116902428 1.299024827 0.130351237 0.228648763 3950729.702 956981.014 18232497.92 0.057533594 6.25E-12 11.20397736 1.182122399 SEDGYHS(ph)DGDYGEHDYRHDISDER ddPTM_HeLa_A486_30min_R1 3 SEDGYHSDGDYGEHDYRHDISDER 24 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 1 0 SEDGYHS(1)DGDYGEHDYRHDISDER;SEDGY(0.003)HS(0.992)DGDY(0.005)GEHDYRHDISDER;SEDGYHS(1)DGDYGEHDYRHDISDER ;; 224.56 2.07E-38 3653560000 979950 918140 938490 209116 1359870 946220 1165180 1113670 835070 944070 TRUE FALSE FALSE 911260.5655 845383.2426 1301898.462 486832.6161 1189302.424 829484.9969 873639.64 860111.6522 907454.54 707668.7271 1.287693705 1.194603082 1.83970043 0.687938576 1.680592032 1.172137421 1.234531931 1.215415659 1.282315447 1 19.43271464 -13.76404909 0.155675045 6.09E-09 1.375246418 0.090026528 0.289921085 307.229958 2.979581181 94.9121266 1.263239233 1.72E-14 13.76404909 1.375246412 SEDLDNS(ph)IDKTEAGIK ddPTM_HeLa_A486_30min_R1 1 SEDLDNSIDKTEAGIK 16 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 S(0.001)EDLDNS(0.999)IDKTEAGIK 72.086 0.0010561 0 41825 56422 25622 29487 43701 50825 73708 59649 34921 79450 TRUE FALSE FALSE 38893.28348 51950.91523 35543.52458 68647.22619 38219.61308 44554.72825 55265.4788 46068.22483 37947.9804 59555.20287 0.653062732 0.87231531 0.596816447 1.152665475 0.641751035 0.748124867 0.927970624 0.773538207 0.637190011 1 15.86193993 -11.40908385 2.162555928 2.641540411 0.785984893 0.143982118 0.161261338 9933689.246 917503.4827 79838830.75 0.041646432 3.90E-12 11.40908385 -1.855555519 SEDMPFS(ph)PK ddPTM_HeLa_A485_30min_R1 9 SEDMPFSPK 9 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK ;;;;;;;; 185.99 3.08E-14 7699230000 13774210 12197700 8763860 22727030 17145260 13806320 22349290 21023690 10292760 28509390 TRUE FALSE FALSE 16838235.49 13624114.91 12005976.51 23968550.1 15438217.71 14529197.57 17574181.61 15867597.06 12358422.52 21402523.75 0.786740652 0.636565812 0.560960784 1.119893634 0.721326975 0.678854407 0.821126603 0.741389065 0.577428282 1 24.35127759 -11.29803517 2.415128182 2.355814955 0.741558116 0.213762653 0.150475527 20602135.41 4331256.047 151464464.6 0.037703578 5.03E-12 11.29803517 -1.614256839 SEDMPFS(ph)PK ddPTM_HeLa_A486_30min_R1 8 SEDMPFSPK 9 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK ;;;;;;; 189.13 1.80E-08 7742380000 15163790 13803510 6724560 9044300 12792270 16063290 21387620 19570390 10532240 25384280 TRUE FALSE FALSE 14100886.63 12709669.6 9328489.722 21055587.47 11187744.21 14081564.6 16036211.26 15114639.42 11445183.04 19027891.06 0.741064082 0.667949462 0.490253475 1.106564432 0.587965538 0.740048624 0.842773968 0.794341284 0.60149509 1 24.18161234 -11.36618141 2.140126625 2.618462981 0.733743081 0.202773471 0.160313954 12275813.8 1194560.021 96291030.01 0.039157414 4.30E-12 11.36618141 -1.8847199 SEDPPT(ph)TPIR ddPTM_HeLa_A485_30min_R1 1 SEDPPTTPIR 10 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C151 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDPPT(0.562)T(0.438)PIR 85.958 0.018789 514790000 575260 757990 764830 696420 912590 639260 835720 710470 632250 809230 TRUE FALSE FALSE 703224.6024 846630.3369 1047772.444 734463.6612 821729.3353 672730.6651 657161.5948 536226.1185 759136.7757 607503.8538 1.157564019 1.393621343 1.724717362 1.208986012 1.352632301 1.107368556 1.081740619 0.882671139 1.249599934 1 19.21253404 -6.224145975 1.600976212 1.039511485 1.403444773 0.460358166 0.164458339 0.338280528 1.724761584 0.071111362 0.066473224 5.97E-07 6.224145975 0.363933288 SEDPPTT(ph)PIR ddPTM_HeLa_A485_30min_R1 2 SEDPPTTPIR 10 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C151 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDPPT(0.099)T(0.901)PIR;SEDPPT(0.328)T(0.672)PIR ; 112.93 0.0029469 10751400000 6927700 8531800 8215700 7226300 9893800 7429400 8722300 7666700 6932900 8693600 TRUE FALSE FALSE 8468742.965 9529519.793 11255029.31 7621054.471 8908738.533 7818391.896 6858709.35 5786429.804 8324269.438 6526445.514 1.297604178 1.460139332 1.724526665 1.167719006 1.365021513 1.197955592 1.050910382 0.88661275 1.275467545 1 22.63786604 -6.159825584 1.122666943 1.040116934 1.462969325 0.530967354 0.15745759 0.373707486 0.98519633 0.07944531 0.078848546 6.92E-07 6.159825584 0.422852391 SEDPPTT(ph)PIR ddPTM_HeLa_A486_30min_R1 2 SEDPPTTPIR 10 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C151 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDPPT(0.228)T(0.772)PIR;SEDPPT(0.194)T(0.806)PIR ; 96.113 0.011158 5671920000 4253350 4620410 3857290 1268940 4972160 3850000 4467480 4574620 3829320 4182210 TRUE FALSE FALSE 3955212.129 4254271.884 5350935.99 2954156.449 4348505.329 3375026.144 3349669.252 3533078.889 4161248.541 3134957.394 1.261647809 1.357042967 1.706860833 0.942327463 1.387101891 1.076577994 1.068489562 1.126994228 1.327370046 1 21.58001441 -5.270287285 24.9998826 1.143572808 1.433369787 0.420902798 0.165744679 628.6038449 1776128.225 0.045544306 0.068706133 5.37E-06 5.270287285 0.289796979 SEDRRS(ph)S(ph)EER ddPTM_HeLa_A485_30min_R1 1 SEDRRSSEER 10 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 SEDRRS(1)S(1)EER 81.185 0.025241 1001300000 1832000 1516300 659570 2110400 566550 1735400 1216200 1350800 1342400 1145100 TRUE FALSE FALSE 2239522.08 1693618.095 903572.39 2225685.808 510142.2927 1826262.861 956348.9346 1019514.182 1611807.367 859647.644 2.605162819 1.970130561 1.051096221 2.589067537 0.593431851 2.12443188 1.11248945 1.185967517 1.874962815 1 19.71338592 -1.000000563 0.7345502 1.419931337 193.2300779 0.281530601 0.572298782 441.8382922 2.03025081 0.202092223 139939.2146 0.09999987 1.000000563 191.8101466 SEDRRS(ph)S(ph)EER ddPTM_HeLa_A486_30min_R1 1 SEDRRSSEER 10 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 S(0.034)EDRRS(0.976)S(0.989)EER 75.764 0.037866 429710000 1257700 515610 352990 214650 191750 975100 422150 323710 1259300 1435900 TRUE FALSE FALSE 1169541.725 474751.1858 489677.1814 499716.0478 167698.927 854802.0761 316523.605 250008.2995 1368457.138 1076341.294 1.086590036 0.441078669 0.454946014 0.464272857 0.155804602 0.794173819 0.294073643 0.232276046 1.271397043 1 20.03770418 -7.767378781 24.99992399 1.135698809 0.479133212 0.484759843 0.265906745 124.9643838 525969.8288 0.228164581 0.065062493 1.71E-08 7.767378781 -0.656565597 SEDRRS(ph)S(ph)EEREAGEI ddPTM_HeLa_A485_30min_R1 4 SEDRRSSEEREAGEI 15 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 S(0.001)EDRRS(1)S(1)EEREAGEI;S(0.043)EDRRS(0.97)S(0.987)EEREAGEI;S(0.048)EDRRS(0.953)S(0.999)EEREAGEI;S(0.057)EDRRS(0.973)S(0.97)EEREAGEI ;;; 100.53 0.00054568 1.35E+11 2617970 2807090 3647710 3681000 5952370 3820710 5203820 5684020 3816210 5236310 TRUE FALSE FALSE 3200328.395 3135354.757 4997149.723 3882083.709 5359731.143 4020756.468 4091981.346 4290005.183 4582088.343 3930994.284 0.814126952 0.797598401 1.271217753 0.987557709 1.363454321 1.022834473 1.040953268 1.091328268 1.165630884 1 21.90646284 -4.74419574 24.9996717 1.11910921 0.805862381 0.539793336 0.115232034 172.291053 249782.0186 0.027880307 0.073374243 1.80E-05 4.74419574 -0.313246828 SEDRRS(ph)S(ph)EEREAGEI ddPTM_HeLa_A486_30min_R1 6 SEDRRSSEEREAGEI 15 3 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 2 0 SEDRRS(1)S(1)EEREAGEI;S(0.005)EDRRS(0.995)S(1)EEREAGEI;S(0.002)EDRRS(0.999)S(1)EEREAGEI;S(0.002)EDRRS(0.999)S(0.999)EEREAGEI;S(0.001)EDRRS(0.999)S(1)EEREAGEI;SEDRRS(1)S(1)EEREAGEI ;;;;; 104.82 0.00031105 1.61E+11 12163240 15123750 13273320 6252796 20551040 16127660 19130320 19654870 13896660 15783260 TRUE FALSE FALSE 11310659.69 13925288.97 18413104.98 14556825.09 17973336.93 14137993.28 14343711.6 15179885.16 15101233.68 11831028.96 0.956016566 1.17701419 1.556340115 1.230393834 1.51916938 1.194992703 1.212380735 1.283057054 1.276409155 1 23.49607222 -10.1090641 0.700024188 0.933842883 1.278221148 0.194050108 0.162161406 85.68924319 20.17603402 11.87603063 0.060028227 7.78E-11 10.1090641 0.344378265 SEEAHAEDSVMDHHFR ddPTM_HeLa_A485_30min_R1 1 SEEAHAEDSVMDHHFR 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 179.41 7.00E-18 663970000 157470 217110 247230 166710 305780 173500 215110 207600 216520 255110 FALSE FALSE TRUE 192498.6582 242499.1259 338690.6651 175816.9452 275335.4695 182584.1917 169149.9912 156685.7745 259973.578 191515.772 1.005132143 1.266209688 1.768474009 0.918028543 1.437664725 0.953363735 0.88321703 0.818135096 1.357452576 1 17.54710368 -6.276938296 23.99412823 0.983616053 1.28551331 0.225939341 0.254722145 699.8549019 1083452.585 0.088621863 0.078468722 5.29E-07 6.276938296 0.301897257 SEEAHAEDSVMDHHFR ddPTM_HeLa_A486_30min_R1 2 SEEAHAEDSVMDHHFR 16 0 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ; ; 189.86 2.83E-18 1106280000 467560 504120 463980 44710 564200 439310 453170 472400 454780 340910 FALSE FALSE TRUE 434786.4585 464171.6952 643645.4818 104087.1395 493432.775 385112.3988 339782.0729 364844.8324 494200.6966 255543.917 1.701415802 1.816406748 2.518727463 0.407316052 1.93091184 1.507030194 1.329642579 1.427718713 1.933916887 1 17.96321172 -1 0.042941613 2.04E-10 4.219055272 0.111999325 0.515956205 1581.231917 5.169589736 133.1771814 470.5544356 0.1 1 4.219055272 SEEDNEIES(ph)EEEVQPK ddPTM_HeLa_A485_30min_R1 4 SEEDNEIESEEEVQPK 16 0 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1;C9J7Y7 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK ;;; 427.37 9.28E-172 1865960000 1221549 1210610 779689 1346121 928593 1128408 1364978 1245920 813628 1625760 TRUE FALSE FALSE 1493278.361 1352180.309 1068128.407 1419656.182 836139.0204 1187489.698 1073339.299 940356.1665 976915.6766 1220487.952 1.223509301 1.107901398 0.875165056 1.163187379 0.685085845 0.972963065 0.879434572 0.770475583 0.800430414 1 20.21902662 -3.599411594 0.548286983 0.848959805 1.849379865 0.448858755 0.12500558 6.655143228 0.8945399 0.063343786 4.96532345 0.000251529 3.599411594 1.000420061 SEEDNEIES(ph)EEEVQPK ddPTM_HeLa_A486_30min_R1 4 SEEDNEIESEEEVQPK 16 0 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1;C9J7Y7 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK ;;; 477.01 5.40E-240 1919810000 987810 903015 416336 271802 525946 846632 890438 783652 591707 1299047 TRUE FALSE FALSE 918569.6201 831456.8027 577552.4491 632768.7921 459976.9484 742183.1518 667640.9943 605231.5466 642996.6392 973757.1758 0.943325136 0.853864622 0.593117528 0.649821955 0.472373359 0.76218504 0.685633966 0.621542579 0.660325444 1 19.89320253 -9.369693093 14.23167613 0.999999999 0.687209038 0.344029564 0.126662389 0 0 0.129881414 0.03150087 4.27E-10 9.369693093 -0.312790961 SEEEQS(ph)SSS(ph)VKKDETNVK ddPTM_HeLa_A485_30min_R1 2 SEEEQSSSSVKKDETNVK 18 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 2 0 S(0.009)EEEQS(0.923)S(0.067)S(0.03)S(0.97)VKKDETNVK;S(0.004)EEEQS(0.846)S(0.15)S(0.192)S(0.807)VKKDETNVK ; 89.511 0.0005089 1212290000 1775340 947390 387760 3713000 1193020 1469390 3036500 2456950 795890 4749800 TRUE FALSE FALSE 2170258.258 1058179.019 531208.56 3915831.788 1074238.74 1546324.988 2387726.969 1854379.16 955617.8227 3565762.274 0.608637955 0.296760955 0.148974755 1.098175225 0.301264823 0.433659024 0.669625955 0.520051259 0.267998186 1 21.76577909 -11.03691931 2.773069437 1.651393616 0.485410483 0.267693737 0.256599796 34133577 21389565.94 140875945.9 0.06278237 9.19E-12 11.03691931 -1.165983134 SEEEQSSSS(ph)VKKDETNVK ddPTM_HeLa_A485_30min_R1 1 SEEEQSSSSVKKDETNVK 18 2 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V2D6;G3V4W0;G3V5V7;B4DY08 P07910;B4DY08 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 SEEEQS(0.001)S(0.001)S(0.158)S(0.84)VKKDETNVK 115.84 2.97E-05 1069900000 1314800 834760 378940 2547200 1009000 1358500 2378000 2259400 797810 3170700 TRUE FALSE FALSE 1607272.724 932377.9206 519125.675 2686347.086 908540.4172 1429628.959 1869920.874 1705278.607 957923.1491 2380302.842 0.675238753 0.391705586 0.21809228 1.128573658 0.381691103 0.600608013 0.785581078 0.716412457 0.40243751 1 21.18271371 -14 0.173183308 2.54350883 0.503535869 0.187866689 0.248431692 227.7020459 2.161723868 121.7601217 0.853448485 1.00E-14 14 -2.039972962 SEEHS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 SEEHSPPR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 SEEHS(1)PPR;SEEHS(1)PPR;SEEHS(1)PPR;SEEHS(1)PPR ;;; 125.74 0.00044373 858860000 445666 587169 543095 434218 621592 504947 568686 549325 502670 691046 TRUE FALSE FALSE 544802.8642 655833.3069 744008.4406 457938.2298 559704.1179 531385.2441 447181.5904 414602.1824 603551.2582 518780.95 1.050159734 1.264181553 1.434147574 0.882719826 1.078883328 1.024295985 0.861985372 0.799185441 1.163402893 1 18.98476598 -5.274117763 24.99403964 0.966490356 1.250964821 0.476921416 0.132610019 627.5212425 1237087.94 0.037810365 0.05649496 5.32E-06 5.274117763 0.284474465 SEEHS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 SEEHSPPR 8 0 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 SEEHS(1)PPR;SEEHS(1)PPR;SEEHS(1)PPR;SEEHS(1)PPR ;;; 126.39 0.00043774 593462000 645807 599140 572190 98327 656046 676204 593401 551486 650299 550555 TRUE FALSE FALSE 600539.2643 551661.9644 793757.2918 228910.2252 573758.5933 592780.8256 444925.7934 425924.6767 706667.4409 412692.4445 1.455173877 1.336738706 1.923362791 0.554675105 1.390281312 1.436374311 1.078105014 1.03206318 1.712334331 1 18.6547075 -5.229615436 24.99932357 1.189513139 1.548256313 0.241035429 0.323239313 1072.327094 842366.1351 0.085497006 0.148068858 5.89E-06 5.229615436 0.358743174 SEEIS(ph)ESESEETNAPK ddPTM_HeLa_A485_30min_R1 1 SEEISESESEETNAPK 16 0 P54259 P54259 ATN1 Atrophin-1 1 0 SEEIS(0.985)ES(0.015)ESEETNAPK 287.01 1.67E-69 0 102530 100810 87007 174080 138270 131760 175280 177180 102780 205540 TRUE FALSE FALSE 125337.4448 112598.8526 119194.51 183589.5496 124503.3533 138658.7499 137829.9961 133726.3272 123407.0032 154302.6607 0.812283108 0.729727226 0.772472162 1.189801581 0.806877553 0.898615418 0.893244455 0.866649522 0.799772361 1 17.23540341 -5.053768289 24.99999329 0.915097829 0.766026455 0.2926434 0.106881201 385.3090816 179151.8822 0.028657432 0.049636525 8.84E-06 5.053768289 -0.149071373 SEEIS(ph)ESESEETNAPK ddPTM_HeLa_A486_30min_R1 2 SEEISESESEETNAPK 16 0 P54259 P54259 ATN1 Atrophin-1 1 0 SEEIS(1)ESESEETNAPK;SEEIS(0.999)ES(0.001)ESEETNAPK ; 395.76 4.21E-189 0 337990 321400 186196 173246 374590 413400 465060 439140 287650 525880 TRUE FALSE FALSE 314298.6464 295931.0935 258296.0777 403325.4434 327605.4293 362398.9111 348697.0691 339157.4084 312583.7336 394196.2251 0.797315211 0.750720262 0.655247466 1.023159071 0.83107196 0.919336331 0.884577393 0.860377109 0.792964807 1 18.58855444 -5.250093949 24.9818386 0.892909286 0.736056911 0.515986589 0.073871587 615.4384144 1355149.676 0.01950747 0.033400445 5.62E-06 5.250093949 -0.156852375 SEEKIS(ph)DSEGFK ddPTM_HeLa_A485_30min_R1 1 SEEKISDSEGFK 12 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 S(0.052)EEKIS(0.948)DSEGFK 70.281 0.0058797 276470000 189070 111300 69063 478880 191410 142820 295790 211160 117970 590400 TRUE FALSE FALSE 231127.9692 124315.5668 94612.27765 505040.0018 172352.5483 150297.8344 232592.0501 159372.6789 141645.4969 443224.1455 0.521469716 0.280480132 0.213463726 1.139468612 0.388860918 0.339101188 0.524772968 0.359575805 0.31957983 1 18.75767695 -10.11914487 4.206849204 1.000087755 0.456060064 0.304740183 0.247357958 187323687 343692377.5 267951.4194 0.061943654 7.60E-11 10.11914487 -0.544027691 SEEPAGQILSHLS(ph)SELK ddPTM_HeLa_A486_30min_R1 1 SEEPAGQILSHLSSELK 17 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SEEPAGQILSHLS(0.979)S(0.021)ELK 191.4 3.69E-18 65515000 140010 115090 69413 53952 127330 136800 188050 192430 126250 208830 TRUE FALSE FALSE 130196.022 105969.8492 96291.57254 125602.9826 111359.0841 119923.0069 140997.901 148617.8897 137193.4517 156537.6087 0.831723591 0.676960956 0.61513379 0.802382147 0.711388688 0.766097092 0.900728599 0.949406925 0.876424859 1 17.25614979 -6.742476482 2.605847893 0.935348912 0.722626178 0.705945836 0.06322491 0.156915502 2.178705309 0.029009398 0.019709272 1.81E-07 6.742476482 -0.212722733 SEESLTS(ph)LHAVDGDSK ddPTM_HeLa_A485_30min_R1 1 SEESLTSLHAVDGDSK 16 0 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 S(0.24)EES(0.24)LT(0.24)S(0.281)LHAVDGDSK 99.003 0.00041565 59325000 155000 170160 110990 139230 166250 160970 204880 194920 130750 234240 TRUE FALSE FALSE 189479.2153 190058.7318 152049.8197 146835.7824 149697.5663 169398.1403 161105.7143 147115.5644 156990.3257 175848.2789 1.077515324 1.080810873 0.864664816 0.835014043 0.851288208 0.963319865 0.916163157 0.836605086 0.892760092 1 17.42397169 -4.757349557 25 0.888636999 1.079163189 0.672207538 0.051294947 54.97382225 336027.6401 0.013262965 0.032534091 1.75E-05 4.757349557 0.190526191 SEETLLT(ph)PER ddPTM_HeLa_A485_30min_R1 1 SEETLLTPER 10 0 Q6P4F7-3;Q6P4F7;H3BQ41 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 SEET(0.001)LLT(0.999)PER 111.86 0.0031951 513780000 468630 431020 367430 639430 553240 504890 732590 658470 452800 780710 TRUE FALSE FALSE 572875.1267 481424.0396 503357.647 674360.4418 498157.4831 531325.2597 576066.1618 496979.2001 543672.8067 586093.3649 0.977446873 0.821411858 0.858835259 1.150602416 0.849962673 0.906553958 0.982891458 0.847952271 0.927621501 1 19.16077098 SEEVPAFGVAS(ph)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK ddPTM_HeLa_A485_30min_R1 4 SEEVPAFGVASPPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK 44 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK ;;; 322.93 9.08E-113 435412000 386863 404770 343734 440121 510739 422764 579192 606861 387229 590538 TRUE FALSE FALSE 472919.3397 452104.3305 470895.5106 464163.6958 459888.0318 444899.2693 455442.8976 458027.3882 464942.3084 443327.7446 1.0667488 1.01979706 1.062183715 1.046998978 1.037354502 1.003544837 1.027327757 1.033157509 1.04875527 1 18.75801413 -6.011764186 8.778002574 1.024424916 1.047129798 0.331868039 0.017515455 0.243082176 146.2312188 0.005541315 0.005867293 9.73E-07 6.011764186 0.022704882 SEEVPAFGVAS(ph)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK ddPTM_HeLa_A486_30min_R1 5 SEEVPAFGVASPPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK 44 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(1)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(0.993)PPPLT(0.003)DT(0.003)PDT(0.001)T(0.001)ANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(0.955)PPPLT(0.029)DT(0.012)PDT(0.002)T(0.002)ANAEGDLPTTMGGPLPPHLALK ;;;; 348.98 3.58E-151 813840000 873361 859854 575115 336347.5 910459 923842 985327 1027483 710040 1027167 TRUE FALSE FALSE 812142.9039 791716.0375 797814.9301 783033.9781 796260.7425 809867.767 738787.7629 793547.5507 771586.8389 769957.6975 1.054788992 1.028259137 1.036180212 1.016983116 1.034161676 1.051834107 0.959517341 1.030637856 1.002115884 1 19.55441966 -6.730576287 24.99997972 1.000620831 1.035554812 0.498367393 0.01904884 181.7171945 147195.6558 0.007062964 0.00547048 1.86E-07 6.730576287 0.034933981 SEGDNYSATLLEPAASSLS(ph)PDHK ddPTM_HeLa_A485_30min_R1 1 SEGDNYSATLLEPAASSLSPDHK 23 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 SEGDNYSATLLEPAAS(0.007)S(0.145)LS(0.848)PDHK 176.87 2.22E-15 1174800000 430020 316540 298050 666680 489780 352550 565220 378630 463020 926660 TRUE FALSE FALSE 525676.4654 353556.5995 408311.0979 703099.0403 441015.7835 371008.9729 444456.1296 285770.3988 555943.8669 695660.7159 0.75565064 0.508231371 0.586939996 1.01069246 0.633952404 0.53331885 0.638897841 0.410789904 0.799159496 1 19.40802433 -8.003634176 24.95413935 1.000000024 0.636168821 0.360502816 0.153206221 126.1813492 866433.4182 0.151734209 0.039177604 9.92E-09 8.003634176 -0.363831204 SEGDNYSATLLEPAASSLS(ph)PDHK ddPTM_HeLa_A486_30min_R1 1 SEGDNYSATLLEPAASSLSPDHK 23 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 SEGDNYSATLLEPAASS(0.001)LS(0.999)PDHK 182.64 6.64E-21 1393500000 572510 617770 349520 220620 520200 715360 742800 725670 536220 920670 TRUE FALSE FALSE 532380.0054 568815.6553 484863.5045 513614.5095 454951.6653 627106.1564 556943.5835 560450.7823 582699.9813 690128.2394 0.771421853 0.824217331 0.702570155 0.744230536 0.659227719 0.90868062 0.807014627 0.812096579 0.844335803 1 19.39650494 -6.271886614 24.99531625 0.858468381 0.743112265 0.500165397 0.066038651 709.4116874 1697283.827 0.023011458 0.020500717 5.35E-07 6.271886614 -0.115356116 SEGEIAR ddPTM_HeLa_A485_30min_R1 2 SEGEIAR 7 0 P50395-2;P50395;Q5SX91 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 ; ; 124.89 0.0093195 15479000 44435 54818 54911 46527 61833 50585 61891 75515 57310 68061 FALSE FALSE TRUE 54319.41245 61228.48825 75224.86394 49068.6522 55676.68941 53233.55238 48667.48225 56994.82785 68811.59132 51094.64527 1.063113603 1.198334736 1.472265118 0.960348231 1.08967758 1.041861669 0.952496724 1.115475556 1.346747608 1 15.64088448 -5.292911758 24.99556747 1.071638913 1.239947741 0.239508919 0.140536302 976.9313433 775883.2302 0.04054142 0.060138761 5.09E-06 5.292911758 0.168308828 SEGFRAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SEGFRASPR 9 1 Q5T0V7;Q03001-11 Q5T0V7 DST Dystonin 1 0 S(0.006)EGFRAS(0.994)PR;S(0.005)EGFRAS(0.995)PR;S(0.001)EGFRAS(0.999)PR;SEGFRAS(1)PR ;;; 73.848 0.0051844 1785120000 1999970 2510270 1837830 1952920 2433060 2097840 2594660 3275360 1996590 3737480 TRUE FALSE FALSE 2444856.427 2803824.24 2517719.795 2059603.075 2190816.003 2207679.659 2040289.695 2472072.824 2397287.299 2805795.019 0.8713596 0.999297604 0.897328486 0.734053293 0.780818267 0.786828561 0.727169904 0.881059667 0.854405715 1 21.41997818 -5.014675226 21.66766274 0.811548582 0.938574769 0.240506079 0.080664934 128.933633 190373.6565 0.02092526 0.038180814 9.67E-06 5.014675226 0.127026187 SEGFRAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SEGFRASPR 9 1 Q5T0V7;Q03001-11 Q5T0V7 DST Dystonin 1 0 SEGFRAS(1)PR;S(0.002)EGFRAS(0.998)PR;S(0.003)EGFRAS(0.997)PR;S(0.002)EGFRAS(0.998)PR ;;; 67.456 0.0080784 1382320000 2788060 2644400 2083680 808596 3040050 2302070 2667950 2472430 2279470 2828500 TRUE FALSE FALSE 2592631.392 2434848.113 2890536.699 1882452.352 2658738.582 2018064.009 2000400.691 1909511.662 2477056.295 2120225.19 1.222809447 1.148391277 1.363315894 0.887854913 1.253988772 0.951815882 0.943485013 0.900617383 1.168298682 1 21.01578607 -5.540503622 1.083696982 0.995407475 1.231628776 0.306810515 0.13264159 0.63585273 1.53206474 0.052222261 0.102558115 2.88E-06 5.540503622 0.236221301 SEGRIS(ph)PK ddPTM_HeLa_A485_30min_R1 3 SEGRISPK 8 1 O60353-2;O60353 O60353-2 FZD6 Frizzled-6 1 0 SEGRIS(1)PK;SEGRIS(1)PK;SEGRIS(1)PK ;; 75.695 0.0060445 1675140000 1316530 1062680 480650 2069130 852160 1098600 1928940 1701500 870300 3982170 TRUE FALSE FALSE 1609387.557 1186951.182 658462.4365 2182161.333 767315.9583 1156120.997 1516806.211 1284204.457 1044961.227 2989488.305 0.538348838 0.397041587 0.220259245 0.729944763 0.256671336 0.386728724 0.507379878 0.429573334 0.34954518 1 21.51146714 -10.4859077 3.035655418 1.015831934 0.422766985 0.610117638 0.138145633 55277708.19 65499178.23 7364434.839 0.033330992 3.27E-11 10.4859077 -0.593064948 SEGRIS(ph)PK ddPTM_HeLa_A486_30min_R1 3 SEGRISPK 8 1 O60353-2;O60353 O60353-2 FZD6 Frizzled-6 1 0 SEGRIS(1)PK;SEGRIS(1)PK;SEGRIS(1)PK ;; 69.451 0.0083569 1627690000 1283270 1037270 602500 612030 1079090 1639800 1662590 1304620 1228590 2882910 TRUE FALSE FALSE 1193319.4 955072.9475 835804.1355 1424836.77 943740.4701 1437498.148 1246592.397 1007586.506 1335085.17 2161010.571 0.552204332 0.441956629 0.386765408 0.659338177 0.436712565 0.665197185 0.576856223 0.466257092 0.617805941 1 21.0432747 -14 0.238591101 3.667245135 0.482808861 0.721185487 0.088675569 88.25694466 0.88162222 114.0230225 0.141070907 1.00E-14 14 -3.184436274 SEGS(ph)PVLPHEPAK ddPTM_HeLa_A485_30min_R1 1 SEGSPVLPHEPAK 13 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 S(0.169)EGS(0.831)PVLPHEPAK 113.52 0.00017926 641040000 1609600 1477600 933430 1977800 1389800 1656800 2218700 2155500 1219900 2597200 TRUE FALSE FALSE 1967649.967 1650392.467 1278744.6 2085842.206 1251426.632 1743547.486 1744656.62 1626860.245 1464722.74 1949765.838 1.00917245 0.846456756 0.655845218 1.069791134 0.641834321 0.894234298 0.894803153 0.834387501 0.751230077 1 20.89486944 -9.76968475 4.907590954 1.000000132 0.842076974 0.114658689 0.129763604 27593926.46 10986464.25 40.63561592 0.02956456 1.70E-10 9.76968475 -0.157923158 SEHKVWS(ph)PLVTEEGK ddPTM_HeLa_A485_30min_R1 1 SEHKVWSPLVTEEGK 15 1 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 S(0.006)EHKVWS(0.994)PLVTEEGK 178.72 6.58E-18 216490000 245430 213640 139440 197120 359980 257860 398830 391930 222810 412980 TRUE FALSE FALSE 300025.0568 238623.3396 191024.6586 207888.1665 324139.1272 271361.1509 313616.7124 295808.553 267525.9233 310031.6863 0.967723849 0.769674037 0.616145597 0.67053845 1.045503223 0.875269086 1.011563418 0.954123614 0.862898649 1 18.24205615 -5.758992536 24.99991331 0.954451508 0.747004665 0.49303159 0.100240137 56.91021468 581457.6671 0.031341901 0.038572818 1.74E-06 5.758992536 -0.207446842 SEHKVWS(ph)PLVTEEGK ddPTM_HeLa_A486_30min_R1 2 SEHKVWSPLVTEEGK 15 1 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 S(0.001)EHKVWS(0.999)PLVTEEGK;S(0.001)EHKVWS(0.999)PLVTEEGK ; 209.66 6.31E-26 421100000 898650 764090 378460 99699 890840 909120 1228640 1191140 602920 865010 TRUE FALSE FALSE 835659.2756 703540.7256 525009.8475 232104.3105 779102.5404 796962.0177 921221.2768 919943.4244 655181.591 648405.8657 1.288790432 1.085031402 0.809693242 0.35796146 1.201566151 1.229109821 1.420747907 1.418777147 1.010449821 1 19.30653762 -5.967245139 24.98754377 1.250414712 0.87991748 0.27519395 0.257822075 242.1734492 184744.6914 0.084419809 0.095722564 1.08E-06 5.967245139 -0.370497232 SEHKVWS(ph)PLVTEEGKR ddPTM_HeLa_A485_30min_R1 1 SEHKVWSPLVTEEGKR 16 2 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SEHKVWS(1)PLVTEEGKR 121.26 1.88E-05 161530000 161950 152730 97617 130360 249200 178430 255930 272000 150600 240730 TRUE FALSE FALSE 197975.2188 170590.4449 133729.5905 137481.2367 224388.773 187772.3189 201248.4647 205291.5735 180824.0386 180720.4413 1.09547773 0.943946593 0.739980433 0.760739824 1.241634712 1.039020918 1.113589936 1.135962108 1.000573246 1 17.46340017 -5.75665463 24.99999984 1.094045786 0.878882921 0.434295281 0.113547045 116.202391 607146.0632 0.035418265 0.044238319 1.75E-06 5.75665463 -0.215162864 SEHKVWS(ph)PLVTEEGKR ddPTM_HeLa_A486_30min_R1 1 SEHKVWSPLVTEEGKR 16 2 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SEHKVWS(1)PLVTEEGKR 97.457 0.00025339 233020000 160570 121520 74216 16267 152350 137270 193540 188810 101890 134110 TRUE FALSE FALSE 149314.8722 111890.3126 102954.4228 37870.39809 133240.8424 120335.0231 145114.2449 145822.0847 110721.9072 100527.9831 1.485306554 1.113026534 1.024136958 0.376714989 1.325410481 1.197030114 1.443520903 1.450562124 1.101403846 1 16.61723762 SEHQNSS(ph)PTCQEDEEDVR ddPTM_HeLa_A485_30min_R1 2 SEHQNSSPTCQEDEEDVR 18 0 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEHQNS(0.087)S(0.913)PTCQEDEEDVR;SEHQNS(0.296)S(0.704)PTCQEDEEDVR ; 208.27 1.23E-25 4964000000 449040 578290 631390 310680 643060 374880 480950 438150 541090 593030 TRUE FALSE FALSE 548927.3988 645915.985 864967.4353 327651.6617 579034.6885 394508.1371 378191.1035 330693.0255 649681.7998 445198.5349 1.232994621 1.450849305 1.942880238 0.73596752 1.30062128 0.886139792 0.849488652 0.742798998 1.459308036 1 18.76408932 -5.271810338 24.99890037 0.987584233 1.533102196 0.458563467 0.27166343 601.4326142 1449735.031 0.075245289 0.112995524 5.35E-06 5.271810338 0.545517963 SEHQNSS(ph)PTCQEDEEDVR ddPTM_HeLa_A486_30min_R1 2 SEHQNSSPTCQEDEEDVR 18 0 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SEHQNS(0.01)S(0.99)PTCQEDEEDVR;SEHQNS(0.002)S(0.998)PTCQEDEEDVR ; 254.11 8.83E-58 4425600000 781860 1231030 991720 31595 1168850 773260 893560 858740 983360 493650 TRUE FALSE FALSE 727055.6515 1133478.699 1375740.543 73554.75672 1022241.934 677863.0431 669981.8369 663223.6482 1068598.437 370036.8269 1.964819712 3.063151063 3.717847639 0.198776855 2.762541076 1.831879948 1.81058151 1.792317953 2.887816452 1 18.49730933 -5.22552617 24.99926451 1.835376415 2.930060354 0.286845529 0.831629292 794.8745335 553313.0481 0.216802829 0.375497731 5.95E-06 5.22552617 1.094683939 SEIPS(ph)PQSQLLEDAEANLVGR ddPTM_HeLa_A485_30min_R1 3 SEIPSPQSQLLEDAEANLVGR 21 0 Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q9ULJ8 PPP1R9A Neurabin-1 1 0 S(0.002)EIPS(0.997)PQS(0.002)QLLEDAEANLVGR;S(0.002)EIPS(0.988)PQS(0.011)QLLEDAEANLVGR;S(0.001)EIPS(0.987)PQS(0.013)QLLEDAEANLVGR ;; 133.95 7.81E-07 53247000 6973.4 12813.2 12228.6 11585.4 16945.8 11428.1 18027.8 17152.9 10996.7 13819.2 TRUE FALSE FALSE 8524.608772 14311.59228 16752.46801 12218.28107 15258.61665 12026.45764 14176.01326 12946.12438 13203.63682 10374.32776 0.82170228 1.379519966 1.614800341 1.177741955 1.470805338 1.159251753 1.366451261 1.247900074 1.272722158 1 13.34073024 -8.896295324 0.908362146 0.996425804 1.298845313 0.143901396 0.201032987 9.815432059 8.376374676 0.295826512 0.06292014 1.27E-09 8.896295324 0.302419509 SEIPS(ph)PQSQLLEDAEANLVGR ddPTM_HeLa_A486_30min_R1 1 SEIPSPQSQLLEDAEANLVGR 21 0 Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5;Q9ULJ8-3 Q9ULJ8 PPP1R9A Neurabin-1 1 0 SEIPS(1)PQSQLLEDAEANLVGR 142.26 2.41E-09 19356000 6022.9 7940.3 5535.7 0 9358 6083.7 7210.3 9482 8152.2 4769.6 TRUE FALSE FALSE 5600.725812 7311.08171 7679.271291 0 8184.23238 5333.154949 5406.206677 7323.155591 8858.83926 3575.261115 1.566522173 2.044908462 2.147891033 0 2.289128575 1.491682643 1.5121152 2.048285525 2.477816018 1 11.8038329 -7.258387818 24.34380145 1.947288088 1.581936722 0.023107625 0.688444974 622.7100564 4967728.08 0.334232834 0.182211849 5.52E-08 7.258387818 -0.365351365 SELCS(ph)SPLGK ddPTM_HeLa_A486_30min_R1 1 SELCSSPLGK 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SELCS(0.763)S(0.237)PLGK 161.67 5.65E-07 771570000 1913700 2209400 1273900 963760 2073200 2530100 3081400 2727000 1933500 2923100 TRUE FALSE FALSE 1779559.512 2034319.098 1767188.196 2243681.986 1813159.924 2217961.986 2310401.128 2106121.63 2101097.337 2191136.734 0.812162694 0.928430922 0.806516622 1.023980818 0.827497388 1.012242619 1.054430375 0.961200457 0.958907449 1 21.06324809 -5.559488575 0.763254788 0.995687785 0.842820287 0.396160604 0.068055853 0.844906699 0.999665637 0.035710324 0.081516923 2.76E-06 5.559488575 -0.152867499 SELCSS(ph)PLGK ddPTM_HeLa_A485_30min_R1 4 SELCSSPLGK 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SELCS(0.311)S(0.689)PLGK;SELCS(0.204)S(0.796)PLGK;SELCS(0.205)S(0.795)PLGK;SELCS(0.157)S(0.843)PLGK ;;; 183.99 1.25E-09 4432220000 7561800 5950290 4665910 10474500 8933600 6172600 9488200 6988800 6212100 13220900 TRUE FALSE FALSE 9243896.322 6646124.655 6392024.274 11046695.41 8044139.416 6495787.791 7460968.559 5274785.842 7458811.489 9925172.943 0.931358715 0.669623058 0.64402145 1.112997776 0.810478514 0.654476031 0.751721769 0.531455308 0.751504435 1 23.24266081 -6.148484479 6.804575877 0.709857814 0.830911767 0.065978394 0.165318917 0.6077432 32.53435048 0.054839207 0.054913225 7.10E-07 6.148484479 0.121053953 SELCSS(ph)PLGK ddPTM_HeLa_A486_30min_R1 3 SELCSSPLGK 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SELCS(0.181)S(0.819)PLGK;SELCS(0.012)S(0.988)PLGK;SELCS(0.04)S(0.96)PLGK ;; 194.48 2.38E-10 4624040000 8116500 9209700 4837800 3806100 8438800 10385100 11805300 11322900 7292500 11726900 TRUE FALSE FALSE 7547575.264 8479889.831 6711125.721 8860793.15 7380327.015 9103891.95 8851489.076 8744922.847 7924619.772 8790407.911 0.858614906 0.96467535 0.763460102 1.00800705 0.839588685 1.035662058 1.006948616 0.994825603 0.901507627 1 23.06749868 -6.263034522 24.99979585 0.98866287 0.891065599 0.339372639 0.070274907 172.6976983 2706580.988 0.022964896 0.02132546 5.46E-07 6.263034522 -0.097597271 SELNEIKENQRS(ph)PVR ddPTM_HeLa_A485_30min_R1 8 SELNEIKENQRSPVR 15 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR ;;;;;;; 237 2.02E-41 16014660000 5019940 5503150 4183980 5959610 7708580 6584150 10040570 9469920 5118200 8822540 TRUE FALSE FALSE 6136608.334 6146695.521 5731808.312 6285168.404 6941086.709 6928885.913 7895320.196 7147407.272 6145375.793 6623243.145 0.926526205 0.928049203 0.865408107 0.948956314 1.047989113 1.046146995 1.192062563 1.0791401 0.927849946 1 22.65910639 -5.700763061 3.146408089 1.061649932 0.908208066 0.500221353 0.064770548 0.202988837 4.072336601 0.021210005 0.027378907 1.99E-06 5.700763061 -0.153441866 SELNEIKENQRS(ph)PVR ddPTM_HeLa_A486_30min_R1 6 SELNEIKENQRSPVR 15 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR;SELNEIKENQRS(1)PVR ;;;;; 213.03 1.97E-26 12690410000 4428920 4073700 2571710 2171300 4989020 4576090 6496520 6332490 3388000 6460150 TRUE FALSE FALSE 4118475.579 3750885.176 3567544.985 5054896.131 4363250.591 4011538.542 4871021.983 4890720.264 3681674.568 4842486.391 0.850487796 0.774578362 0.736717607 1.043863776 0.901035179 0.828404711 1.005892756 1.009960559 0.760285992 1 22.20731656 -5.245953945 24.99536004 0.933067592 0.785992961 0.376353371 0.08747777 878.7296886 1418373.858 0.023502247 0.040518083 5.68E-06 5.245953945 -0.147074632 SELNEIKENQRS(ph)PVRVK ddPTM_HeLa_A485_30min_R1 1 SELNEIKENQRSPVRVK 17 3 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 SELNEIKENQRS(1)PVRVK 76.492 0.0049657 94703000 32798 50318 43451 36850 69393 81003 96116 233200 36816 37371 TRUE FALSE FALSE 40093.80195 56202.25239 59525.33305 38863.02219 62483.98927 85244.19183 75580.0314 176007.3344 44204.6335 28055.09746 1.429109345 2.00328131 2.121729683 1.385239251 2.227188458 3.038456449 2.693985701 6.273631186 1.575636426 1 14.7759753 -6.237654761 2.234609828 3.290781673 1.776840023 0.120947565 1.338123232 0.502444423 4.930403371 0.500388048 0.468673992 5.79E-07 6.237654761 -1.513941649 SELS(ph)PVAR ddPTM_HeLa_A485_30min_R1 3 SELSPVAR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 SELS(1)PVAR;S(0.025)ELS(0.975)PVAR;SELS(1)PVAR ;; 115.82 0.00096394 1153010000 1423980 1583860 1455180 1850200 1995800 1710020 2153700 2314770 1489170 2284860 TRUE FALSE FALSE 1740739.438 1769078.649 1993511.637 1951271.741 1797091.144 1799554.003 1693544.401 1747069.028 1788032.76 1715286.452 1.014838913 1.031360475 1.162203336 1.137577773 1.047691563 1.049127393 0.987324536 1.01852902 1.042410588 1 20.71001809 -6.252588066 2.353723953 1.015318182 1.086926384 0.334068287 0.044185373 0.385995064 4.210462178 0.018671723 0.017344029 5.59E-07 6.252588066 0.071608202 SELS(ph)PVAR ddPTM_HeLa_A486_30min_R1 3 SELSPVAR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 SELS(1)PVAR;SELS(1)PVAR;S(0.001)ELS(0.999)PVAR ;; 118.21 0.00085602 1234620000 1774210 1981300 1557320 812565 2184400 1948340 2361790 2401340 1688770 2303450 TRUE FALSE FALSE 1649847.041 1824294.572 2160356.01 1891692.385 1910412.183 1707973.62 1770845.162 1854607.303 1835153.943 1726651.127 0.955518469 1.056550767 1.251182695 1.0955846 1.10642628 0.989182814 1.025595231 1.07410656 1.062840034 1 20.71954518 -6.236519752 24.04203201 1.034679728 1.099950372 0.156030179 0.071679128 963.9059237 929959.7225 0.025116846 0.025104448 5.80E-07 6.236519752 0.065270644 SELSQDAEPAGS(ph)QETK ddPTM_HeLa_A486_30min_R1 1 SELSQDAEPAGSQETK 16 0 Q9BVJ6-3;Q9BVJ6;X6RJY0;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 SELSQDAEPAGS(1)QETK 217.91 1.09E-33 333760000 387550 419910 251150 226090 421310 528900 643220 542230 392470 704860 TRUE FALSE FALSE 360384.7463 386634.8023 348402.006 526348.946 368465.3712 463649.6955 482279.5527 418776.0658 426489.6156 528358.4681 0.68208379 0.731766075 0.659404603 0.996196669 0.69737762 0.877528654 0.912788536 0.79259838 0.807197464 1 19.01115754 -1.007225667 0.11652133 1.01686502 3.94E-20 0.394670833 0.093274977 109.473499 0.884966953 0.709812657 18.00140947 0.098349993 1.007225667 -1.01686502 SEMIEKPLFDFSLITTGIQEPQTDETRNS(ph)PTQK ddPTM_HeLa_A485_30min_R1 1 SEMIEKPLFDFSLITTGIQEPQTDETRNSPTQK 33 2 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 SEMIEKPLFDFSLITTGIQEPQT(0.001)DET(0.064)RNS(0.934)PT(0.001)QK 283.88 1.86E-78 215240000 101990 88367 57546 148570 123590 100310 149380 117810 81124 208540 TRUE FALSE FALSE 124677.3236 98700.75196 78834.66009 156686.0029 111284.9456 105562.0765 117463.7427 88916.91278 97404.84269 156554.8159 0.796381273 0.630454907 0.50355947 1.000837962 0.710836936 0.674281886 0.750304243 0.567960253 0.622177236 1 17.25630836 -10.5077597 2.860937252 1.011925085 0.694371121 0.329909011 0.130313947 41972706.17 45838394.18 3920708.86 0.036364692 3.11E-11 10.5077597 -0.317553963 SEMIEKPLFDFSLITTGIQEPQTDETRNS(ph)PTQK ddPTM_HeLa_A486_30min_R1 1 SEMIEKPLFDFSLITTGIQEPQTDETRNSPTQK 33 2 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 SEMIEKPLFDFSLITTGIQEPQT(0.001)DET(0.041)RNS(0.94)PT(0.017)QK 320.52 4.06E-110 242550000 126340 111780 52892 63932 95921 140210 168860 158550 95276 181280 TRUE FALSE FALSE 117484.2184 102922.1457 73373.1989 148836.9269 83889.69375 122912.3158 126609.442 122451.6261 103534.6004 135886.3081 0.864577308 0.757413658 0.539960206 1.095304811 0.617352071 0.904523182 0.931730678 0.901132924 0.761920769 1 17.05204057 -6.144881127 0.914084199 0.897946571 0.761783834 0.108886082 0.152255801 1.362211456 2.466302078 0.086666159 0.090210079 7.16E-07 6.144881127 -0.136162737 SEMT(ph)PEELQKR ddPTM_HeLa_A485_30min_R1 3 SEMTPEELQKR 11 1 K7ERG4;P62316 K7ERG4 SNRPD2 Small nuclear ribonucleoprotein Sm D2 1 0 S(0.001)EMT(0.999)PEELQKR;SEMT(1)PEELQKR;S(0.003)EMT(0.997)PEELQKR ;; 99.161 0.0013084 1756840000 1236750 1283530 937650 1600430 1713520 1560110 2239910 2339720 1212910 2196720 TRUE FALSE FALSE 1511860.771 1433627.668 1284525.754 1687857.438 1542915.932 1641794.947 1761334.93 1765900.001 1456329.912 1649118.132 0.916769237 0.86932988 0.778916761 1.023490923 0.935600611 0.995559333 1.068046549 1.070814739 0.883096173 1 20.65326332 -5.27521833 24.9483267 0.999993598 0.85643775 0.526333105 0.061518856 582.589532 1054842.064 0.017665085 0.026354152 5.31E-06 5.27521833 -0.143555848 SEMT(ph)PEELQKR ddPTM_HeLa_A486_30min_R1 4 SEMTPEELQKR 11 1 K7ERG4;P62316 K7ERG4 SNRPD2 Small nuclear ribonucleoprotein Sm D2 1 0 SEMT(1)PEELQKR;SEMT(1)PEELQKR;SEMT(1)PEELQKR;SEMT(1)PEELQKR ;;; 136.6 1.67E-05 1958780000 2496400 2264970 1292410 1083340 2615190 2613440 3294030 3226160 1910580 3430460 TRUE FALSE FALSE 2321415.251 2085485.528 1792865.764 2522070.269 2287168.485 2291020.344 2469828.853 2491633.795 2076190.613 2571450.487 0.902764904 0.811015238 0.697219633 0.980796745 0.88944683 0.890944763 0.960480812 0.96896044 0.807400579 1 21.29415094 -5.277286184 24.9967091 0.925163472 0.804401444 0.397240208 0.07027291 806.4923375 1272157.08 0.019542469 0.029091671 5.28E-06 5.277286184 -0.120762028 SEMTAS(ph)PLVGPER ddPTM_HeLa_A486_30min_R1 1 SEMTASPLVGPER 13 0 B4DIB3;A0A087X0I6;Q9P0L2-2;Q9P0L2-3;Q9P0L2 B4DIB3 MARK1 Serine/threonine-protein kinase MARK1 1 0 SEMT(0.003)AS(0.997)PLVGPER 157.2 1.72E-08 65714000 39694 47810 45361 11369 59587 39583 47904 45621 37844 39075 TRUE FALSE FALSE 36911.65558 44021.36148 62925.99401 26467.60656 52113.04283 34699.65191 35917.91252 35234.0942 41124.34839 29290.36566 1.260197841 1.502929734 2.148351261 0.90362841 1.779187171 1.184678003 1.22627054 1.202924354 1.404023045 1 14.83813858 -6.296506291 24.40330715 1.217680086 1.518766328 0.199491792 0.315148913 810.9767836 564361.566 0.108098415 0.095338575 5.05E-07 6.296506291 0.301086242 SEPFS(ph)PSLRPEPPKHPESIK ddPTM_HeLa_A485_30min_R1 2 SEPFSPSLRPEPPKHPESIK 20 2 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 SEPFS(0.96)PS(0.04)LRPEPPKHPESIK;SEPFS(0.981)PS(0.019)LRPEPPKHPESIK ; 182.41 2.77E-19 2221490000 937000 586060 400930 1249550 934910 721680 1211040 900970 762570 1790230 TRUE FALSE FALSE 1145432.417 654594.619 549250.6911 1317809.752 841827.0777 759466.0489 952291.4107 680005.6948 915610.8043 1343958.608 0.852282511 0.487064568 0.408681255 0.980543407 0.626378724 0.565096309 0.708571979 0.505972201 0.681279021 1 20.35805727 -11.38851303 1.722929362 2.685602794 0.639114962 0.294949482 0.163768958 2016871.857 198270.6943 13188239.23 0.043673588 4.09E-12 11.38851303 -2.046487832 SEPFS(ph)PSLRPEPPKHPESIK ddPTM_HeLa_A486_30min_R1 2 SEPFSPSLRPEPPKHPESIK 20 2 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 SEPFS(0.796)PS(0.204)LRPEPPKHPESIK;SEPFS(0.97)PS(0.03)LRPEPPKHPESIK ; 194.21 5.18E-20 2864300000 1296290 1288110 601100 473610 1135290 1583690 1911670 1795730 1024360 1729960 TRUE FALSE FALSE 1205426.765 1186035.472 833862.018 1102588.015 992891.342 1388310.43 1433349.946 1386881.48 1113152.35 1296766.756 0.929563285 0.914609715 0.643031612 0.850259316 0.765666869 1.070593785 1.10532595 1.069491852 0.858405989 1 20.30648758 -6.263362059 24.99171116 1.030391913 0.817627388 0.510719735 0.097696767 144.3579644 1876406.632 0.034661802 0.032146784 5.45E-07 6.263362059 -0.212764525 SEPHS(ph)PGIPEIFR ddPTM_HeLa_A485_30min_R1 4 SEPHSPGIPEIFR 13 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 0 SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR ;;; 209.6 5.42E-22 519121000 459410 646730 606270 475144 757840 545220 662100 684120 526991 611250 TRUE FALSE FALSE 561604.1696 722359.4477 830554.502 501099.9136 682386.7887 573766.8761 520636.9261 516338.4973 632753.2599 458876.6242 1.223867462 1.574190991 1.80997344 1.09201447 1.487081173 1.250372858 1.134590212 1.125222925 1.37891805 1 18.80774679 -6.027474801 1.037545734 1.166145163 1.50016781 0.296981278 0.201112847 0.656047729 1.511353311 0.101033028 0.115729233 9.39E-07 6.027474801 0.334022647 SEPHS(ph)PGIPEIFR ddPTM_HeLa_A486_30min_R1 4 SEPHSPGIPEIFR 13 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 0 SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR ;;; 182.22 3.00E-17 443620000 347501 379886 307310 106897 420273 332393 386075 394028 329779 378384 TRUE FALSE FALSE 323142.9744 349782.4498 426308.662 248861.6183 367558.4414 291385.7312 289474.9515 304316.426 358364.5092 283634.1835 1.139294885 1.233216834 1.503022861 0.877403475 1.295889081 1.027329384 1.020592609 1.072918723 1.263474327 1 18.11367189 -5.262728899 24.99998099 1.087064698 1.285982046 0.313619248 0.143478598 146.9115302 2848200.016 0.038833763 0.061466976 5.46E-06 5.262728899 0.198917348 SEPQPEEGS(ph)PAGGQK ddPTM_HeLa_A485_30min_R1 2 SEPQPEEGSPAGGQK 15 0 F8WE91;Q9Y6K1-3;Q9Y6K1 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 1 0 SEPQPEEGS(1)PAGGQK;SEPQPEEGS(1)PAGGQK ; 290.32 4.43E-67 866610000 608060 615190 471050 883940 807390 702030 994770 1012570 549610 1031270 TRUE FALSE FALSE 743320.8492 687131.1191 645310.997 932227.4039 727003.4167 738787.2053 782229.263 764235.6199 659911.6857 774193.3681 0.960122987 0.887544569 0.833526899 1.204127344 0.939046299 0.954267029 1.0103797 0.987137905 0.852386126 1 19.56233442 SEPQPEEGS(ph)PAGGQK ddPTM_HeLa_A486_30min_R1 2 SEPQPEEGSPAGGQK 15 0 F8WE91;Q9Y6K1-3;Q9Y6K1 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 1 0 SEPQPEEGS(1)PAGGQK;SEPQPEEGS(1)PAGGQK ; 290.32 4.43E-67 1079740000 1171880 1197370 689700 496420 1159880 1319870 1569010 1490080 987620 1604400 TRUE FALSE FALSE 1089737.264 1102486.04 956770.3108 1155690.848 1014397.035 1157037.859 1176427.103 1150821.312 1073227.697 1202647.797 0.906115046 0.916715636 0.795553206 0.960955361 0.843469748 0.962075399 0.978197528 0.956906349 0.892387363 1 20.19778277 -6.281672501 24.53689174 0.956487746 0.885647288 0.364179527 0.048431657 745.2129052 903723.2883 0.016478288 0.014550244 5.23E-07 6.281672501 -0.070840458 SEPRPPIS(ph)SPR ddPTM_HeLa_A486_30min_R1 2 SEPRPPISSPR 11 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 S(0.001)EPRPPIS(0.625)S(0.374)PR;SEPRPPIS(0.5)S(0.5)PR ; 97.86 0.00082257 875760000 1484930 1898610 1808310 587240 2155950 1745440 1874610 1882050 1888830 1980850 TRUE FALSE FALSE 1380844.075 1748157.229 2508536.06 1367124.397 1885530.648 1530105.359 1405562.75 1453548.3 2052555.305 1484832.267 0.929966371 1.177343238 1.689440697 0.920726487 1.269861041 1.030490375 0.946613824 0.978930976 1.382348263 1 20.50186854 SEPRPPISS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SEPRPPISSPR 11 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 S(0.003)EPRPPIS(0.21)S(0.787)PR;SEPRPPIS(0.333)S(0.667)PR;SEPRPPIS(0.139)S(0.86)PR ;; 99.161 0.00073402 1671030000 1944090 2423310 2159570 2143030 2552670 2397270 3107840 2921100 1988470 3117900 TRUE FALSE FALSE 2376546.113 2706695.025 2958484.81 2260098.302 2298517.212 2522787.35 2443824.595 2204695.645 2387537.69 2340664.911 1.015329491 1.156378691 1.263950597 0.965579606 0.981993279 1.077807993 1.044072812 0.941909982 1.020025412 1 21.15848698 -5.282986633 24.96275605 1.005831301 1.146335523 0.484430472 0.066520437 660.5045678 765201.3141 0.019302802 0.028658622 5.21E-06 5.282986633 0.140504222 SEPRPPISS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SEPRPPISSPR 11 1 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 S(0.063)EPRPPIS(0.393)S(0.544)PR 59.898 0.0061567 0 148410 186730 197930 61552 245540 161300 183840 186260 181970 170720 TRUE FALSE FALSE 138007.2254 171932.8347 274573.7967 143296.1667 214742.0836 141400.446 137841.2875 143852.664 197743.3061 127970.6008 1.078429143 1.343533856 2.145600591 1.11975849 1.678057947 1.104944769 1.077132456 1.124107124 1.545224488 1 16.96545289 -6.276759191 24.58836753 1.172216614 1.483612952 0.189656156 0.312553539 1144.852845 1837487.937 0.109831141 0.097243165 5.29E-07 6.276759191 0.311396338 SEPSDHS(ph)RHSPQQPSNGSLR ddPTM_HeLa_A485_30min_R1 1 SEPSDHSRHSPQQPSNGSLR 20 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.004)EPS(0.019)DHS(0.489)RHS(0.489)PQQPSNGSLR 64.954 0.0060598 89930000 22735 48610 46170 12645 59047 38356 47657 55062 39768 25367 TRUE FALSE FALSE 27792.32232 54294.51665 63250.20429 13335.76433 53168.07335 40364.26085 37474.69263 41557.95817 47749.07283 19043.47375 1.459414532 2.851082601 3.321358547 0.700280028 2.791931455 2.119584976 1.967849623 2.182267727 2.507371999 1 14.21700905 -10.11955606 6.018004094 1.000060656 2.224640571 0.209203645 0.706045015 5.65E-05 8.26E-06 0.661700955 0.160485248 7.59E-11 10.11955606 1.224579915 SEPSDHS(ph)RHSPQQPSNGSLR ddPTM_HeLa_A486_30min_R1 1 SEPSDHSRHSPQQPSNGSLR 20 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.001)EPS(0.019)DHS(0.49)RHS(0.49)PQQPSNGSLR 65.428 0.005538 51723000 33895 35851 44107 2991.5 58313 24977 32875 35991 37079 12005 TRUE FALSE FALSE 31519.13553 33010.03619 61186.41163 6964.363182 50998.83979 21895.59169 24649.32728 27796.63498 40293.03757 8998.869861 3.502565991 3.668242424 6.799343981 0.773915313 5.667249397 2.433149054 2.739158102 3.088902874 4.477566428 1 13.13552811 -9.708957801 0.256828434 2.52E-13 4.147893432 0.194079141 1.60746353 21.17306927 1.508854025 23.77927808 2.566940609 1.95E-10 9.708957801 4.147893432 SEPSDHSRHS(ph)PQQPSNGSLR ddPTM_HeLa_A485_30min_R1 2 SEPSDHSRHSPQQPSNGSLR 20 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 SEPSDHS(0.014)RHS(0.986)PQQPSNGSLR;SEPSDHSRHS(1)PQQPSNGSLR ; 249.35 5.52E-47 1904460000 320570 882700 897550 92717 1217370 602370 788060 1005620 679530 259230 TRUE FALSE FALSE 391879.6905 985924.0865 1229591.095 97781.89494 1096164.368 633909.1618 619684.5431 758990.1182 815905.438 194608.7318 2.013679895 5.066186278 6.318272998 0.50245379 5.632657684 3.257352103 3.184258679 3.900082547 4.192542804 1 17.57021692 -10.24693513 5.982369892 0.999911715 3.825403658 0.209952498 1.619214703 0.001821973 0.000229347 1.49790385 0.363284235 5.66E-11 10.24693513 2.825491943 SEPSDHSRHS(ph)PQQPSNGSLR ddPTM_HeLa_A486_30min_R1 2 SEPSDHSRHSPQQPSNGSLR 20 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 SEPSDHS(0.005)RHS(0.995)PQQPSNGSLR;SEPSDHS(0.305)RHS(0.695)PQQPSNGSLR ; 232.06 2.03E-36 1214500000 614820 596110 807720 15727.1 1122020 371750 512020 529890 570280 104081 TRUE FALSE FALSE 571724.2929 548872.0726 1120490.815 36613.4836 981285.7892 325887.2647 383907.1804 409245.6144 619712.3296 78018.44015 7.328066184 7.035158247 14.36187154 0.469292689 12.57761354 4.177054349 4.920723609 5.245498547 7.943152009 1 16.25152753 -8.412870756 0.235536018 6.71E-13 9.202461994 0.209540311 3.749804274 7.353940953 1.040351991 21.37776583 9.20736262 3.86E-09 8.412870756 9.202461994 SEPSSPCSSSSLSSESSRLSTEPSSEALGVGEVLHVK ddPTM_HeLa_A486_30min_R1 1 SEPSSPCSSSSLSSESSRLSTEPSSEALGVGEVLHVK 37 1 H0Y7D7;Q99941-2;Q99941 H0Y7D7 ATF6B Cyclic AMP-dependent transcription factor ATF-6 beta;Processed cyclic AMP-dependent transcription factor ATF-6 beta 0 0 18.867 0.035048 42233000 19782 16307 27274 2259.5 41632 19746 29735 28369 23406 14271 FALSE FALSE TRUE 18395.38395 15014.77393 37835.22322 5260.230189 36410.12636 17309.93928 22294.9885 21909.99799 25434.85093 10697.44871 1.719604782 1.403584568 3.536845489 0.491727545 3.403627102 1.618137161 2.084140723 2.048151721 2.377655795 1 13.38497914 -10.21959024 5.953695063 0.999975672 2.077548205 0.12508694 0.853653451 0.0002519 3.30E-05 0.755284029 0.183179167 6.03E-11 10.21959024 1.077572533 SEPVINNDNPLES(ph)NDEKEGQEATCSRPQIVPEPMDFR ddPTM_HeLa_A485_30min_R1 3 SEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFR 37 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;H7C4B4 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 SEPVINNDNPLES(0.995)NDEKEGQEAT(0.003)CS(0.003)RPQIVPEPMDFR;SEPVINNDNPLES(1)NDEKEGQEATCSRPQIVPEPMDFR;SEPVINNDNPLES(1)NDEKEGQEATCSRPQIVPEPMDFR ;; 273.1 5.04E-79 1776860000 413584 307224 263629 660745 454356 374541 631768 527147 314596 896270 TRUE FALSE FALSE 505584.334 343151.1743 361156.3376 696839.8263 409118.7213 394151.3876 496785.6057 397863.3717 377732.5316 672846.3836 0.751411238 0.509999285 0.536758979 1.035659614 0.608041793 0.585796992 0.738334363 0.591313829 0.561394905 1 19.35991764 -10.48612929 3.058857583 1.009129709 0.657706995 0.328238885 0.146934402 126255772 152225663.9 9808531.004 0.036569085 3.26E-11 10.48612929 -0.351422713 SEPVKEES(ph)SELEQPFAQDTSSVGPDR ddPTM_HeLa_A485_30min_R1 2 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.977)S(0.023)ELEQPFAQDTSSVGPDR;SEPVKEES(0.937)S(0.063)ELEQPFAQDTSSVGPDR ; 300.65 1.31E-90 906230000 272573 298322 195299 547557 440182 322230 532734 463320 249746 700670 TRUE FALSE FALSE 333205.9235 333208.1628 267548.2272 577468.6524 396355.9345 339101.4645 418911.0289 349690.0435 299867.7314 526005.8639 0.633464276 0.633468533 0.508641149 1.09783691 0.753519992 0.644672404 0.796399922 0.664802557 0.570084389 1 19.00471936 -11.36501997 2.301273022 3.033746977 0.706118001 0.253294928 0.154072315 12172930.29 721318.6323 130348751.5 0.039343202 4.31E-12 11.36501997 -2.327628976 SEPVKEES(ph)SELEQPFAQDTSSVGPDR ddPTM_HeLa_A486_30min_R1 4 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.5)S(0.5)ELEQPFAQDTSSVGPDR;SEPVKEES(0.897)S(0.103)ELEQPFAQDTSSVGPDR;SEPVKEES(0.795)S(0.205)ELEQPFAQDTSSVGPDR;SEPVKEES(0.812)S(0.188)ELEQPFAQDTSSVGPDR ;;; 278.48 3.86E-76 2324820000 1023930 1053990 549470 653340 972760 1217570 1588790 1569460 868480 1913500 TRUE FALSE FALSE 952157.7946 970467.9938 762239.4993 1521008.538 850747.3702 1067358.593 1191257.937 1212128.219 943760.5457 1434347.145 0.663826604 0.676592133 0.531419121 1.060418702 0.593125153 0.744142446 0.830522751 0.845073121 0.657972199 1 20.4519628 -14 0.087436545 1.792431956 0.524532335 0.259016935 0.140663099 315.2396907 1.92123786 47.73447541 3.593793058 1.00E-14 14 -1.26789962 SEPVKEES(ph)SELEQPFAQDTSSVGPDRK ddPTM_HeLa_A486_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 S(0.003)EPVKEES(0.488)S(0.488)ELEQPFAQDT(0.004)S(0.004)S(0.014)VGPDRK 71.091 0.0043667 1310300000 88974 78894 48866 45741 86132 108110 123480 123620 52723 132860 TRUE FALSE FALSE 82737.38206 72642.15211 67788.22388 106487.3596 75328.52141 94772.48738 92583.99796 95474.42461 57293.07209 99590.99123 0.83077175 0.729404851 0.680666223 1.06924691 0.75637887 0.951617071 0.929642298 0.958665271 0.575283682 1 16.60372762 -5.221897117 24.99441774 0.888283722 0.74519333 0.193205341 0.135280475 879.9408687 556204.0099 0.03520311 0.060972438 6.00E-06 5.221897117 -0.143090393 SEPVKEESS(ph)ELEQPFAQDTSSVGPDR ddPTM_HeLa_A485_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.304)S(0.696)ELEQPFAQDTSSVGPDR 149.54 2.10E-09 670480000 94469 83490 72891 171740 130360 103520 178740 162550 88425 225340 TRUE FALSE FALSE 115483.3031 93253.42923 99856.41415 181121.7213 117380.9007 108940.1471 140550.7388 122684.3576 106171.0864 169166.8851 0.682659039 0.551251087 0.590283459 1.070668892 0.69387635 0.643980334 0.830840733 0.725226794 0.627611523 1 17.36808766 -11.55893692 2.203471023 5.83616397 0.71633301 0.273603842 0.140224902 4841602.29 279729.3756 118615923.7 0.036245003 2.76E-12 11.55893692 -5.11983096 SEPVKEESS(ph)ELEQPFAQDTSSVGPDRK ddPTM_HeLa_A485_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.118)S(0.878)ELEQPFAQDT(0.001)S(0.001)S(0.001)VGPDRK 78.588 0.00316 1895700000 74877 79411 66168 128900 102510 108650 151550 152920 90155 143630 TRUE FALSE FALSE 91533.13033 88697.42567 90646.29668 135941.4806 92303.74447 114338.746 119170.1045 115416.1302 108248.2815 107825.6843 0.848899137 0.822600165 0.840674439 1.26075231 0.856045988 1.06040362 1.105210741 1.070395527 1.003919263 1 16.71834135 -5.06183156 24.95600065 1.048602667 0.834721355 0.513815129 0.095189794 163.6027591 66031.80382 0.024607358 0.042621266 8.67E-06 5.06183156 -0.213881311 SEPVKEESS(ph)ELEQPFAQDTSSVGPDRK ddPTM_HeLa_A486_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.178)S(0.798)ELEQPFAQDT(0.008)S(0.008)S(0.01)VGPDRK 100.68 0.00059983 947150000 182740 133450 66776 85951 115840 169470 245480 235830 99414 265020 TRUE FALSE FALSE 169930.8697 122874.936 92633.45552 200098.2717 101310.267 148562.5144 184058.3076 182136.6571 108031.2856 198657.267 0.855397199 0.618527265 0.466297845 1.007253723 0.509975137 0.747833274 0.926511828 0.916838633 0.543807368 1 17.59992204 -6.530160575 23.56040056 0.839475597 0.686112046 0.13485948 0.185053443 185.1788844 599132.7776 0.06850937 0.053210373 2.95E-07 6.530160575 -0.153363552 SEPVKEESSELEQPFAQDT(ph)SSVGPDRK ddPTM_HeLa_A485_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEESSELEQPFAQDT(0.46)S(0.46)S(0.079)VGPDRK 97.047 0.0020613 615280000 116650 90152 60814 185890 151850 113740 243120 209650 84428 224940 TRUE FALSE FALSE 142598.3901 100694.4922 83311.62928 196044.7 136731.2808 119695.2505 191175.4259 158233.0088 101371.9252 168866.5977 0.844444029 0.596296091 0.493357659 1.160944217 0.80969998 0.708815433 1.132109183 0.937029649 0.600307737 1 17.36552446 -5.245356548 24.97301154 0.901432216 0.639858954 0.302186268 0.182468788 1035.734455 1608259.688 0.049545537 0.085490806 5.68E-06 5.245356548 -0.261573262 SEPVKEESSELEQPFAQDTS(ph)SVGPDR ddPTM_HeLa_A485_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEESSELEQPFAQDT(0.002)S(0.599)S(0.399)VGPDR 203.64 1.17E-28 424320000 458400 421860 360890 606880 561870 516290 778490 740880 410260 850950 TRUE FALSE FALSE 560369.4985 471192.8573 494398.2289 640032.3177 505928.25 543322.1461 612159.2518 559178.0183 492595.4189 638823.8256 0.877189416 0.73759437 0.773919521 1.001891746 0.791968348 0.850503886 0.958259895 0.875324301 0.771097444 1 19.28505859 -14 0.138749782 1.469512724 0.799581354 0.220848398 0.081280511 221.827145 1.890418384 29.39123507 0.526049622 1.00E-14 14 -0.669931369 SEPVKEESSELEQPFAQDTS(ph)SVGPDR ddPTM_HeLa_A486_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEESSELEQPFAQDT(0.034)S(0.844)S(0.122)VGPDR 136.73 1.33E-06 597740000 105550 118790 66127 50757 111830 132630 153960 154100 93375 143120 TRUE FALSE FALSE 98151.49006 109376.6478 91733.14534 118164.8611 97803.23863 116267.4591 115437.5796 119014.794 101468.8202 107281.8204 0.914893965 1.019526396 0.855067009 1.101443475 0.911647828 1.083757328 1.076021819 1.109365906 0.945815608 1 16.7110461 -5.268074815 24.97064876 1.03603953 0.93879885 0.293672494 0.072485802 668.9582595 2517440.462 0.019754043 0.030070628 5.39E-06 5.268074815 -0.09724068 SEPVKEESSELEQPFAQDTS(ph)SVGPDRK ddPTM_HeLa_A485_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEESSELEQPFAQDT(0.093)S(0.454)S(0.454)VGPDRK 236.73 5.13E-50 2004100000 217760 135840 94015 322070 231100 219450 403520 343930 139440 438910 TRUE FALSE FALSE 266199.9607 151725.3063 128795.0608 339663.8686 208090.8726 230940.0627 317304.6555 259580.6282 167424.329 329497.8145 0.807895983 0.460474394 0.390882898 1.030853176 0.631539462 0.70088496 0.96299472 0.787806828 0.508119695 1 18.32990937 -5.248350244 24.96804268 0.789575946 0.543823437 0.273534841 0.185661432 1049.730549 2002399.152 0.049701764 0.085414995 5.64E-06 5.248350244 -0.245752509 SEPVKEESSELEQPFAQDTSS(ph)VGPDR ddPTM_HeLa_A486_30min_R1 1 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEESSELEQPFAQDTS(0.043)S(0.957)VGPDR 216.2 2.65E-38 823460000 290330 279750 185810 137300 317760 350400 459430 389710 268910 409720 TRUE FALSE FALSE 269979.3663 257581.5912 257760.6082 319641.3388 277903.5778 307171.2106 344475.7546 300981.5403 292219.3353 307123.4452 0.879058146 0.838690745 0.839273628 1.040758509 0.904859535 1.000155525 1.121619857 0.980001837 0.951471924 1 18.22845912 -5.254597985 24.93227403 1.00013493 0.850975819 0.608936516 0.0541629 367.6590675 1339866.018 0.015561276 0.026219924 5.56E-06 5.254597985 -0.149159111 SEPVS(ph)PSR ddPTM_HeLa_A485_30min_R1 3 SEPVSPSR 8 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 SEPVS(0.988)PS(0.012)R;SEPVS(0.994)PS(0.006)R;SEPVS(0.922)PS(0.078)R ;; 157.99 8.15E-05 7149670000 5203710 7346160 6104590 5625530 6202920 5749250 6935730 6202890 5499370 7079920 TRUE FALSE FALSE 6361257.337 8205229.509 8362931.874 5932838.459 5585335.505 6050271.84 5453854.626 4681621.502 6603043.116 5315026.24 1.196844013 1.54377968 1.573450722 1.11623879 1.05085756 1.13833339 1.026119981 0.880827543 1.242334998 1 22.34164538 -5.365233727 5.350964833 1.056191044 1.446867103 0.639870865 0.128607086 0.133871675 5.628323663 0.036205656 0.05435371 4.31E-06 5.365233727 0.390676058 SEPVS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 SEPVSPSR 8 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 SEPVS(0.992)PS(0.008)R;SEPVS(0.946)PS(0.054)R;S(0.014)EPVS(0.871)PS(0.115)R;SEPVS(0.927)PS(0.073)R ;;; 147.4 0.00029132 8071380000 9543180 11267210 7898810 2887670 10113520 9531640 9788130 9072210 9315890 10868540 TRUE FALSE FALSE 8874252.363 10374355.25 10957440.77 6722641.695 8844988.017 8355723.167 7339036.346 7006665.828 10123398.85 8146986.842 1.089268037 1.273397815 1.344968512 0.825169087 1.085675991 1.025621292 0.900828305 0.860031563 1.242594231 1 22.95783515 -5.25350036 24.97680404 0.987163272 1.239630091 0.437256974 0.127002785 538.6209442 1694542.029 0.033987451 0.057516099 5.58E-06 5.25350036 0.252466819 SEPVS(ph)PSRER ddPTM_HeLa_A485_30min_R1 2 SEPVSPSRER 10 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 SEPVS(0.986)PS(0.014)RER;SEPVS(1)PSRER ; 120.53 0.00011861 2468600000 404680 580970 632300 468840 861490 618840 796080 1034040 577250 605080 TRUE FALSE FALSE 494699.6699 648909.3877 866214.0822 494451.542 775717.0307 651241.5055 625991.0046 780440.0687 693098.7801 454244.6917 1.089059881 1.428545891 1.906932757 1.088513638 1.707707421 1.433679947 1.378092064 1.718104984 1.525826923 1 18.79311013 -10.48782506 6.047359772 0.999612331 1.485028448 0.24758953 0.247962859 0.001244926 0.000105437 0.230621829 0.055890977 3.25E-11 10.48782506 0.485416117 SEPVS(ph)PSRER ddPTM_HeLa_A486_30min_R1 2 SEPVSPSRER 10 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 SEPVS(1)PSRER;SEPVS(0.998)PS(0.002)RER ; 150.14 1.84E-06 2557700000 563540 607980 660280 336010 1047400 641240 850590 931470 530420 670000 TRUE FALSE FALSE 524038.7561 559801.4506 915958.0989 782248.261 916025.3254 562130.3285 637763.3854 719394.6148 576397.2327 502227.639 1.043428747 1.114636884 1.823790703 1.557557172 1.82392456 1.11927398 1.269869151 1.432407456 1.147681226 1 18.9379819 -6.327541445 24.999925 1.225623195 1.477006899 0.217827785 0.260655007 372.040923 140705.098 0.098460525 0.086834029 4.70E-07 6.327541445 0.251383704 SEPVSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 SEPVSPSR 8 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 S(0.001)EPVS(0.148)PS(0.851)R 96.665 0.0028133 498590000 371260 515340 517540 427320 482680 443100 471060 518220 441760 523750 TRUE FALSE FALSE 453845.5062 575604.5301 708999.5826 450663.4096 434622.6844 466300.0308 370414.1828 391125.7325 530417.1799 393188.7639 1.154268758 1.463939418 1.803204078 1.146175707 1.105379208 1.185944446 0.942077233 0.994753076 1.349014083 1 18.58486257 -5.474574241 16.79831445 1.095718536 1.473145939 0.471040842 0.180571367 8.965656852 3117.061823 0.05129857 0.076057192 3.35E-06 5.474574241 0.377427402 SEQDKCNREPS(ph)KGR ddPTM_HeLa_A485_30min_R1 1 SEQDKCNREPSKGR 14 3 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 SEQDKCNREPS(1)KGR 79.97 0.028801 191940000 153990 183700 85334 151910 228860 280990 522070 756050 145090 254690 TRUE FALSE FALSE 188244.5442 205182.117 116902.5976 160208.4586 206073.8948 295702.2019 410525.4796 570627.5521 174208.2322 191200.4702 0.984540174 1.073125588 0.611413756 0.837908288 1.077789686 1.54655583 2.147094508 2.984446384 0.911128681 1 17.54472655 -6.334582053 2.568221569 1.918062572 0.883620348 0.325355385 0.565608959 0.288706619 3.736862778 0.215176415 0.189858668 4.63E-07 6.334582053 -1.034442224 SEQSSMSIEFGQES(ph)PEQSLAMDFSR ddPTM_HeLa_A485_30min_R1 4 SEQSSMSIEFGQESPEQSLAMDFSR 25 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SEQSSMSIEFGQES(1)PEQSLAMDFSR;SEQSSMSIEFGQES(1)PEQSLAMDFSR;SEQSSMSIEFGQES(1)PEQSLAMDFSR;SEQSSMSIEFGQES(1)PEQSLAMDFSR ;;; 313.4 1.82E-105 302558000 190823 252690 247158 217289 277040 217542 259595 249065 215247 288528 TRUE FALSE FALSE 233270.918 282239.8974 338592.0293 229158.9479 249456.9249 228932.1627 204130.4076 187981.4182 258445.0985 216603.2796 1.076950074 1.303026888 1.563189763 1.057966197 1.151676583 1.05691919 0.942416052 0.867860443 1.193172601 1 17.72469556 -5.433439012 11.10173465 1.032374036 1.313373198 0.450522091 0.139753525 0.603946854 72.75884868 0.040513981 0.060093922 3.69E-06 5.433439012 0.280999162 SEQSSMSIEFGQES(ph)PEQSLAMDFSR ddPTM_HeLa_A486_30min_R1 4 SEQSSMSIEFGQESPEQSLAMDFSR 25 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SEQSSMSIEFGQES(1)PEQSLAMDFSR;SEQSSMSIEFGQES(0.999)PEQS(0.001)LAMDFSR;SEQSSMSIEFGQES(0.965)PEQS(0.035)LAMDFSR;SEQSSMSIEFGQES(0.999)PEQS(0.001)LAMDFSR ;;; 273.75 2.91E-75 387626000 357834 381656 313468 127791 367164 361443 358736 381114 342985 379565 TRUE FALSE FALSE 332751.6845 351412.1886 434851.2046 297503.9062 321110.8675 316851.8375 268976.4585 294342.6619 372715.216 284519.4534 1.169521734 1.235107773 1.528370729 1.045636432 1.128607776 1.113638571 0.945371064 1.034525613 1.309981484 1 18.11816777 -5.30535053 24.99986031 1.081476032 1.303411163 0.410231398 0.125427627 444.0052681 252783.8356 0.035547551 0.052725847 4.95E-06 5.30535053 0.221935131 SERPPTILMTEEPSS(ph)PK ddPTM_HeLa_A485_30min_R1 3 SERPPTILMTEEPSSPK 17 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 SERPPTILMTEEPS(0.025)S(0.975)PK;SERPPTILMTEEPS(0.065)S(0.935)PK;SERPPTILMT(0.003)EEPS(0.06)S(0.937)PK ;; 130.83 6.04E-06 556240000 743455 599610 453233 1249340 842850 493027 835990 619857 436677 1611300 TRUE FALSE FALSE 908833.9999 669729.1736 620902.7473 1317588.281 758932.8946 518841.1314 657373.9071 467836.0989 524314.0685 1209632.564 0.751330633 0.553663314 0.513298638 1.089246702 0.627407791 0.428924573 0.543449248 0.38675885 0.433449036 1 20.20613745 -10.09491976 4.923380182 1.000013656 0.591921631 0.28401892 0.194363304 3.25E-05 5.97E-06 0.200727219 0.0486818 8.04E-11 10.09491976 -0.408092025 SERPPTILMTEEPSS(ph)PK ddPTM_HeLa_A486_30min_R1 4 SERPPTILMTEEPSSPK 17 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 SERPPTILMTEEPS(0.022)S(0.978)PK;SERPPTILMTEEPS(0.036)S(0.964)PK;SERPPTILMTEEPS(0.034)S(0.966)PK;SERPPTILMTEEPS(0.037)S(0.963)PK ;;; 177.03 3.28E-13 1298400000 798830 927130 414956 628300 702410 983670 1350280 1140150 733810 1583270 TRUE FALSE FALSE 742836.1422 853660.8423 575638.0761 1462714.153 614307.1881 862314.7966 1012425.662 880562.7343 797417.2416 1186808.887 0.625910499 0.719290908 0.485030136 1.232476576 0.517612562 0.726582693 0.853065454 0.741958326 0.671900295 1 20.1786562 -14 0.262670404 2.701911058 0.715361567 0.142533617 0.197005888 410.7815117 4.030906717 378.5871229 0.250768238 1.00E-14 14 -1.986549491 SES(ph)APTLHPYSPLSPK ddPTM_HeLa_A485_30min_R1 1 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 S(0.45)ES(0.54)APT(0.009)LHPYSPLSPK 116.13 8.57E-05 800210000 125050 119930 103420 111200 149070 142400 178860 184970 124810 192540 TRUE FALSE FALSE 152866.9411 133954.7702 141679.3617 117274.5744 134228.0674 149855.8438 140645.0998 139605.8175 149858.2222 144543.3214 1.05758564 0.926744791 0.980186149 0.811345507 0.928635554 1.036753842 0.973030773 0.965840663 1.036770296 1 17.14114243 -6.241456026 23.95317873 0.998503636 0.93509829 0.199238298 0.060916138 816.6862756 978926.3698 0.020585644 0.020554518 5.74E-07 6.241456026 -0.063405347 SES(ph)ELIDELSEDFDR ddPTM_HeLa_A485_30min_R1 7 SESELIDELSEDFDR 15 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.301)ES(0.699)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;S(0.012)ES(0.988)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;S(0.01)ES(0.99)ELIDELSEDFDR;S(0.01)ES(0.99)ELIDELSEDFDR ;;;;;; 458.15 4.28E-215 1293657000 344934.3 471214 379516.6 368950.8 376063.6 408747.7 507731.3 507845 393993.3 519723 TRUE FALSE FALSE 421663.745 526318.3783 519915.5833 389105.648 338621.3875 430149.0975 399250.36 383295.2175 473064.1414 390165.6209 1.080730137 1.348961441 1.332550987 0.997283274 0.867891402 1.102478216 1.023284315 0.982391059 1.21247008 1 18.57372714 -5.267866612 24.9391714 1.022226661 1.263568917 0.485843519 0.107068611 389.2362424 1510328.182 0.029946121 0.045659249 5.40E-06 5.267866612 0.241342257 SES(ph)ELIDELSEDFDR ddPTM_HeLa_A486_30min_R1 6 SESELIDELSEDFDR 15 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;S(0.158)ES(0.842)ELIDELSEDFDR;SES(1)ELIDELSEDFDR;S(0.011)ES(0.989)ELIDELSEDFDR ;;;;; 364.06 2.83E-118 1338745000 457010 456450 302593 129931.8 343198 371716 377272 348186 353697 486028 TRUE FALSE FALSE 424975.959 420279.2396 419765.1133 302487.7968 300150.9066 325857.4593 282874.5552 268911.6486 384355.7407 364323.4253 1.166479917 1.153588297 1.152177116 0.830272708 0.823858379 0.894418082 0.77643801 0.73811243 1.054984978 1 18.47486023 -5.257534645 24.16231704 0.857795021 1.157032468 0.666635504 0.091336816 114.5741993 708974.5192 0.024316991 0.040146768 5.53E-06 5.257534645 0.299237447 SES(ph)ELIDELSEDFDRSECK ddPTM_HeLa_A485_30min_R1 4 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.147)ES(0.853)ELIDELSEDFDRSECK;S(0.003)ES(0.997)ELIDELSEDFDRSECK;S(0.001)ES(0.999)ELIDELSEDFDRSECK;S(0.003)ES(0.997)ELIDELSEDFDRSECK ;;; 279.15 7.10E-70 718014000 257910 200253 219801 479770 562017 348719 652472 704599 372298 794249 TRUE FALSE FALSE 315281.1897 223670.8464 301114.5366 505978.6203 506060.6141 366977.3876 513066.027 531794.9905 447014.7937 596257.3414 0.528766973 0.375124683 0.50500768 0.848591011 0.848728525 0.615468125 0.860477501 0.891888374 0.749701115 1 19.1855756 -5.207889686 4.79217708 0.819604973 0.451964708 0.731059145 0.100327659 0.107177199 5.379495131 0.02723473 0.047683418 6.20E-06 5.207889686 -0.367640265 SES(ph)ELIDELSEDFDRSECK ddPTM_HeLa_A486_30min_R1 2 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.156)ES(0.843)ELIDELSEDFDRSECK;SES(1)ELIDELSEDFDRSECK ; 302.49 1.13E-79 397751000 261067 289160 198435 223212 445657 337104 507321 500455 250177 403255 TRUE FALSE FALSE 242767.5515 266245.9085 275274.3463 519648.8165 389758.5435 295515.5359 380383.9199 386512.3214 271862.5438 302277.3233 0.80312856 0.88080014 0.910668201 1.719112803 1.289407155 0.977630517 1.258393835 1.278667937 0.899381207 1 18.20551323 -5.029902627 24.98099484 1.219294666 0.855406552 0.338383229 0.217256074 714.2479832 596690.7451 0.059797318 0.103775184 9.33E-06 5.029902627 -0.363888114 SES(ph)LDPDSSMDTTLILK ddPTM_HeLa_A485_30min_R1 4 SESLDPDSSMDTTLILK 17 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.009)ES(0.991)LDPDSSMDTTLILK;S(0.01)ES(0.99)LDPDSSMDTTLILK;S(0.021)ES(0.979)LDPDSSMDTTLILK;SES(0.838)LDPDS(0.136)S(0.026)MDTTLILK ;;; 250.95 2.94E-43 249143000 231375 211701 169915 275300 322431 230957 382060 455969 330999 543990 TRUE FALSE FALSE 282843.5705 236457.5904 232773.6293 290338.9419 290328.6375 243049.5514 300429.7599 344141.8878 397427.4632 408383.3044 0.692593374 0.579008955 0.569988113 0.710947139 0.710921907 0.595150558 0.735656322 0.842693333 0.973172652 1 18.63956436 -7.412993358 1.449211751 1.003568729 0.641083588 0.878936168 0.050692757 0.141759381 0.523179616 0.046622546 0.016285993 3.86E-08 7.412993358 -0.362485141 SES(ph)LDPDSSMDTTLILK ddPTM_HeLa_A486_30min_R1 3 SESLDPDSSMDTTLILK 17 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.007)ES(0.993)LDPDSSMDTTLILK;S(0.101)ES(0.899)LDPDSSMDTTLILK;SES(1)LDPDSSMDTTLILK ;; 259.98 1.48E-51 209261000 377289 396227 174410 175582 329378 490000 598970 700640 350669 506260 TRUE FALSE FALSE 350842.9894 364828.5295 241946.2229 408763.7694 288064.3399 429548.782 449101.3707 541119.5669 381065.2713 379489.2008 0.924513764 0.961367356 0.637557597 1.077142033 0.75908442 1.131913059 1.183436498 1.425915588 1.004153137 1 18.53369931 -6.384014869 5.285747556 1.184539987 0.876116192 0.432653638 0.156900993 0.20065959 7.851743489 0.053981834 0.047276261 4.13E-07 6.384014869 -0.308423795 SES(ph)LELPQAAPPQIYHEK ddPTM_HeLa_A486_30min_R1 1 SESLELPQAAPPQIYHEK 18 0 B0QY58;B0QY55;B0QY57;B0QY56;H0YGT9;Q15040 B0QY58 JOSD1 Josephin-1 1 0 S(0.166)ES(0.834)LELPQAAPPQIYHEK 119.38 2.40E-06 0 219230 249210 132190 95815 235080 250150 257650 256540 208080 276170 TRUE FALSE FALSE 203863.1091 229461.692 183377.5082 223062.1622 205594.0744 219289.0363 193183.2449 198131.4422 226116.5419 207015.2344 0.984773462 1.108429013 0.885816489 1.077515685 0.993134998 1.059289366 0.933183712 0.957086288 1.092270057 1 17.65937742 -6.73293044 24.99992497 0.992058684 1.017807841 0.023996738 0.068858118 933.826706 818885.6005 0.025268635 0.019569446 1.85E-07 6.73293044 0.025749156 SES(ph)LKGR ddPTM_HeLa_A485_30min_R1 3 SESLKGR 7 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 SES(1)LKGR;SES(1)LKGR;SES(1)LKGR ;; 147.2 0.00054389 928370000 1495900 1042550 477220 2335770 701100 1576410 1468430 2146620 1190870 2766460 TRUE FALSE FALSE 1828657.794 1164467.154 653763.5368 2463367.201 631296.0223 1658948.39 1154687.935 1620158.079 1429866.686 2076832.435 0.880503291 0.56069384 0.314788774 1.186117454 0.30397061 0.79878779 0.555985122 0.780110158 0.688484377 1 20.98595339 -8.748341145 0.750767856 1.006496289 0.653753659 0.134392351 0.249663226 5.782274559 4.287043257 0.328175507 0.083676617 1.79E-09 8.748341145 -0.35274263 SES(ph)LKGR ddPTM_HeLa_A486_30min_R1 3 SESLKGR 7 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 SES(1)LKGR;SES(1)LKGR;S(0.001)ES(0.999)LKGR ;; 130.66 0.00025322 558840000 759070 339037 465930 449280 304479 1533960 649290 597880 881980 1258640 TRUE FALSE FALSE 705863.1128 312170.4734 646350.574 1045946.545 266288.4047 1344715.611 486830.7745 461755.7756 958430.7365 943468.3516 0.748157701 0.330875405 0.685079232 1.108618581 0.282244131 1.425289581 0.516001171 0.489423704 1.015858916 1 19.8476146 -2.901982895 0.109931908 1.065524834 1.40E-21 0.08152767 0.337219153 207.5799146 2.502546115 3.797047687 33.1467792 0.001253191 2.901982895 -1.065524834 SES(ph)LSNCSIGK ddPTM_HeLa_A485_30min_R1 4 SESLSNCSIGK 11 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 SES(0.984)LS(0.016)NCSIGK;SES(1)LSNCSIGK;S(0.001)ES(0.968)LS(0.032)NCSIGK;SES(1)LSNCSIGK ;;; 261.63 1.82E-27 2274290000 1788310 1422750 1197430 2275080 2043810 1498580 2331830 2002200 1410530 2844560 TRUE FALSE FALSE 2186113.39 1589128.236 1640409.186 2399361.86 1840321.1 1577043.332 1833615.471 1511157.311 1693610.433 2135463.542 1.023718432 0.74416079 0.768174756 1.123578938 0.861789988 0.738501642 0.85864986 0.707648377 0.793087964 1 21.02611784 -6.005334587 24.98551635 0.803347401 0.90478768 0.102520392 0.127152415 528.7634645 2476575.694 0.04009119 0.044170766 9.88E-07 6.005334587 0.10144028 SES(ph)LSNCSIGK ddPTM_HeLa_A486_30min_R1 5 SESLSNCSIGK 11 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 SES(0.999)LS(0.001)NCSIGK;SES(1)LSNCSIGK;SES(1)LSNCSIGK;SES(1)LSNCSIGK;S(0.002)ES(0.989)LS(0.008)NCSIGK ;;;; 270.24 1.39E-28 3674040000 2351190 2712448 1455662 934523 2354900 2737865 3203610 2951760 2028100 2937790 TRUE FALSE FALSE 2186383.723 2497503.742 2019333.31 2175616.772 2059526.483 2400095.053 2402032.894 2279708.684 2203897.341 2202148.262 0.992841291 1.134121523 0.916983359 0.987951996 0.93523516 1.08988804 1.090768017 1.035220345 1.00079426 1 21.07048017 -6.275660591 24.96111048 1.048500017 0.996692044 0.139005119 0.061165757 1689.358875 2965154.936 0.022254533 0.019726488 5.30E-07 6.275660591 -0.051807973 SES(ph)LSNCSIGKK ddPTM_HeLa_A485_30min_R1 4 SESLSNCSIGKK 12 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.025)ES(0.974)LSNCSIGKK;SES(0.986)LS(0.014)NCSIGKK;SES(0.996)LS(0.004)NCSIGKK;SES(0.957)LS(0.042)NCSIGKK ;;; 127.57 2.14E-05 3025490000 2247320 1719350 1078430 2469140 2332040 2377740 3821120 4200240 1676310 3598780 TRUE FALSE FALSE 2747228.581 1920413.026 1477386.134 2604022.866 2099853.909 2502234.79 3004706.496 3170124.554 2012730.041 2701670.377 1.016862977 0.710824327 0.546841742 0.963856616 0.777242823 0.926180637 1.112166207 1.173394276 0.744994674 1 21.36542024 -6.443892406 3.643023934 1.02259693 0.793134415 0.263388622 0.160038984 0.309770922 7.831026299 0.060956836 0.051572369 3.60E-07 6.443892406 -0.229462515 SES(ph)LSNCSIGKK ddPTM_HeLa_A486_30min_R1 2 SESLSNCSIGKK 12 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.01)ES(0.978)LS(0.012)NCS(0.001)IGKK;SES(0.963)LS(0.037)NCSIGKK ; 164.53 1.46E-10 662500000 854380 733930 385560 370436 803150 838200 1102800 1042300 570570 1169610 TRUE FALSE FALSE 794492.374 675770.7139 534859.1577 862393.7288 702411.4379 734791.4062 826867.7758 804991.0432 620027.467 876732.0431 0.906197487 0.770783638 0.610060008 0.983645728 0.801170031 0.838102602 0.943124849 0.918172262 0.707202927 1 19.74177645 -5.27680105 24.91616622 0.878117697 0.76319068 0.216240305 0.106072331 1217.644595 1974980.158 0.029500251 0.04393776 5.29E-06 5.27680105 -0.114927017 SES(ph)NRFPLPFPFPSK ddPTM_HeLa_A486_30min_R1 1 SESNRFPLPFPFPSK 15 1 H3BRY6;B4DVT3;B4DJL6;Q96SY0-4;Q96SY0-3;Q96SY0 H3BRY6 VWA9 von Willebrand factor A domain-containing protein 9 1 0 S(0.002)ES(0.998)NRFPLPFPFPSK 114.46 8.10E-05 30492000 45206 44982 33062 24331 50050 54683 61780 63513 41298 66797 TRUE FALSE FALSE 42037.29284 41417.4625 45864.49183 56643.79762 43772.2623 47936.76744 46321.99056 49052.47638 44877.74389 50070.59642 0.839560458 0.827181329 0.915996515 1.131278668 0.874210923 0.957383592 0.925133589 0.979666309 0.896289381 1 15.61167602 -4.89739479 4.776589158 0.963750545 0.835277542 0.383425475 0.066457488 0.208231407 7.873152861 0.01734859 0.038037993 1.27E-05 4.89739479 -0.128473003 SES(ph)PCESPYPNEKDKEK ddPTM_HeLa_A486_30min_R1 1 SESPCESPYPNEKDKEK 17 2 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H0Y594;B7ZBA0;B7ZB98 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 S(0.135)ES(0.865)PCESPYPNEKDKEK 94.057 0.00032345 533340000 262400 346570 168980 323870 339890 506750 728100 674360 271370 678800 TRUE FALSE FALSE 244007.115 319106.531 234413.5814 753985.7275 297257.8269 444232.3373 545921.6789 520822.9492 294892.5701 508824.0618 0.479551054 0.627145127 0.46069673 1.481820111 0.584205522 0.873056859 1.072908536 1.023581604 0.579557046 1 18.95680737 SES(ph)PDHMVSQYQQALEEIER ddPTM_HeLa_A486_30min_R1 2 SESPDHMVSQYQQALEEIER 20 0 Q14149;H0YHQ4;H0YIR5 Q14149 MORC3 MORC family CW-type zinc finger protein 3 1 0 S(0.041)ES(0.959)PDHMVSQYQQALEEIER;S(0.152)ES(0.848)PDHMVSQYQQALEEIER ; 265.89 3.43E-59 180476000 24569 26902 23718.2 7561.3 33007 26294 31665 28394 23556 22488.6 TRUE FALSE FALSE 22846.83997 24770.18754 32902.52224 17603.08853 28866.95428 23050.11362 23742.08208 21929.30604 25597.85305 16857.30818 1.355307723 1.469403494 1.951825397 1.044240773 1.712429646 1.367366211 1.408414785 1.300878278 1.518501813 1 14.04108656 -12.29407135 0.214990418 5.04E-11 1.536035584 0.269321422 0.229184261 85.08517554 1.640286612 38.36619947 0.467010536 5.08E-13 12.29407135 1.536035584 SES(ph)PFRETEPLVSPHQDK ddPTM_HeLa_A485_30min_R1 2 SESPFRETEPLVSPHQDK 18 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 S(0.025)ES(0.933)PFRET(0.043)EPLVSPHQDK;S(0.139)ES(0.848)PFRET(0.013)EPLVSPHQDK ; 161.68 2.69E-12 618150000 205459 210059 201090 247443 296300 235050 330610 377940 224702 417330 TRUE FALSE FALSE 251162.6457 234623.5728 275481.5591 260960.1845 266799.3316 247356.8545 259972.4727 285249.6224 269797.6303 313297.3114 0.801675075 0.748884731 0.879297552 0.832947411 0.85158513 0.789527537 0.829794777 0.910475807 0.861155269 1 18.25717286 -14 0.123774088 1.575083356 0.754315036 0.687481428 0.0371054 88.11315652 0.698919347 12.48600273 0.33804131 1.00E-14 14 -0.82076832 SES(ph)PFRETEPLVSPHQDK ddPTM_HeLa_A486_30min_R1 2 SESPFRETEPLVSPHQDK 18 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 S(0.006)ES(0.993)PFRETEPLVSPHQDK;S(0.005)ES(0.971)PFRET(0.024)EPLVSPHQDK ; 155.25 9.38E-09 861440000 409030 409811 274885 98079 476880 425670 557990 563700 374537 463610 TRUE FALSE FALSE 380359.1092 377336.0839 381327.8337 228332.8686 417065.2637 373155.1633 418375.0002 435357.8155 407002.1687 347519.0384 1.094498624 1.085799747 1.097286167 0.657037006 1.200122058 1.07376898 1.203890878 1.252759611 1.171165098 1 18.40673249 SES(ph)PIPVAEQGTLMR ddPTM_HeLa_A485_30min_R1 2 SESPIPVAEQGTLMR 15 0 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 0 SES(1)PIPVAEQGTLMR;SES(1)PIPVAEQGTLMR ; 233.14 8.75E-35 554440000 262190 321270 315090 300740 366340 319100 390540 385430 284140 380880 TRUE FALSE FALSE 320513.261 358839.7318 431654.903 317168.6647 329865.9033 335807.5826 307097.9386 290902.6882 341164.2917 285933.6256 1.120935883 1.25497563 1.509633231 1.109238775 1.15364502 1.174424945 1.074018272 1.017378378 1.193159045 1 18.12532076 -5.441658336 24.99983254 1.107567263 1.294207633 0.406871424 0.106169576 101.386503 31205.91761 0.030137288 0.044700814 3.62E-06 5.441658336 0.18664037 SES(ph)PIPVAEQGTLMR ddPTM_HeLa_A486_30min_R1 1 SESPIPVAEQGTLMR 15 0 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 0 SES(1)PIPVAEQGTLMR 209.66 1.06E-25 259840000 205570 199660 165410 69642 246480 211560 251540 239390 177980 240610 TRUE FALSE FALSE 191160.6046 183838.2145 229461.1818 162130.0955 215564.1801 185459.8782 188602.0315 184886.1228 193407.4497 180359.6899 1.059885414 1.019286596 1.272242051 0.898926449 1.195190456 1.028277872 1.045699466 1.0250967 1.072342993 1 17.46051741 SES(ph)PKEPEQLR ddPTM_HeLa_A485_30min_R1 9 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 SES(1)PKEPEQLR;S(0.017)ES(0.983)PKEPEQLR;S(0.156)ES(0.844)PKEPEQLR;S(0.014)ES(0.986)PKEPEQLR;S(0.014)ES(0.986)PKEPEQLR;SES(1)PKEPEQLR;S(0.001)ES(0.999)PKEPEQLR;S(0.012)ES(0.988)PKEPEQLR;S(0.093)ES(0.907)PKEPEQLR ;;;;;;;; 192.14 2.85E-11 1.10E+11 24408490 19108980 13786870 45159890 28286730 22005760 41098820 33919520 17689240 56269940 TRUE FALSE FALSE 29838074.39 21343608.98 18887206.93 47626860.44 25470403.84 23157947.57 32317721.36 25600704.54 21239308.21 42242879.53 0.706345655 0.505259329 0.447109836 1.127452981 0.602951412 0.548209493 0.765045416 0.606035972 0.502790256 1 25.33220485 -10.7149876 2.784010845 1.056555077 0.648107808 0.247936453 0.18508099 125142739.8 105866794.7 49342797.49 0.046250641 1.93E-11 10.7149876 -0.408447268 SES(ph)PKEPEQLR ddPTM_HeLa_A486_30min_R1 11 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 SES(1)PKEPEQLR;S(0.052)ES(0.948)PKEPEQLR;SES(1)PKEPEQLR;S(0.079)ES(0.921)PKEPEQLR;S(0.003)ES(0.997)PKEPEQLR;S(0.001)ES(0.999)PKEPEQLR;S(0.099)ES(0.901)PKEPEQLR;SES(1)PKEPEQLR;S(0.021)ES(0.979)PKEPEQLR;SES(1)PKEPEQLR;S(0.001)ES(0.999)PKEPEQLR ;;;;;;;;;; 185.32 6.90E-11 96205110000 27759980 25622720 11563220 19725870 22408660 30881320 43159180 37668670 20028450 53943170 TRUE FALSE FALSE 25814148.75 23592282.35 16040808.46 45922822.25 19597956.91 27071496.72 32360296.67 29092336.14 21764532.17 40435449.12 0.638403908 0.58345543 0.396701627 1.135706991 0.484672666 0.669499098 0.800295221 0.719476024 0.538253751 1 25.2691173 -11.70894779 2.020157096 9.99939333 0.667329446 0.215806857 0.192591915 4918219.442 139264.6635 204282684.8 0.048064487 1.95E-12 11.70894779 -9.332063884 SES(ph)PKEPEQLRK ddPTM_HeLa_A485_30min_R1 8 SESPKEPEQLRK 12 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.223)ES(0.777)PKEPEQLRK;S(0.156)ES(0.844)PKEPEQLRK;S(0.005)ES(0.995)PKEPEQLRK;S(0.013)ES(0.987)PKEPEQLRK;S(0.001)ES(0.999)PKEPEQLRK;S(0.002)ES(0.998)PKEPEQLRK;S(0.024)ES(0.976)PKEPEQLRK;S(0.008)ES(0.992)PKEPEQLRK ;;;;;;; 155.57 1.15E-07 36524170000 7297371 5391000 3290661 13549260 8121850 6941417 13608100 11899930 4924419 17943020 TRUE FALSE FALSE 8920646.003 6021430.555 4508013.44 14289421.77 7313210.096 7304858.861 10700618.27 8981453.509 5912704.724 13470155.33 0.662252646 0.447020128 0.334666775 1.06082086 0.542919507 0.542299527 0.794394571 0.666766885 0.438948518 1 23.68326315 -11.20713759 2.260006159 2.135832567 0.613504602 0.262626556 0.195963299 6213314.082 1112321.8 36147264.09 0.050603901 6.21E-12 11.20713759 -1.522327965 SES(ph)PKEPEQLRK ddPTM_HeLa_A486_30min_R1 7 SESPKEPEQLRK 12 2 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.001)ES(0.999)PKEPEQLRK;S(0.001)ES(0.999)PKEPEQLRK;SES(1)PKEPEQLRK;S(0.004)ES(0.996)PKEPEQLRK;S(0.005)ES(0.995)PKEPEQLRK;S(0.004)ES(0.996)PKEPEQLRK;S(0.003)ES(0.997)PKEPEQLRK ;;;;;; 151.38 8.02E-08 57502930000 19416190 16339890 6223250 16267540 13829320 21644070 32688560 28744410 12748050 42904600 TRUE FALSE FALSE 18055215.35 15045057.61 8633059.064 37871655.24 12094717.73 18973844.7 24509536.54 22199935.33 13853061.24 32161008.9 0.561400776 0.46780428 0.26843247 1.177564278 0.376067734 0.589964225 0.762088547 0.690274842 0.430740879 1 24.93880933 -14 0.218194415 2.955704035 0.547413417 0.198197973 0.241149681 256.7665977 2.568500707 221.6082213 0.46805795 1.00E-14 14 -2.408290618 SES(ph)PMQEIVTDDGENLRPIVIDGSNVAMSHGNK ddPTM_HeLa_A485_30min_R1 1 SESPMQEIVTDDGENLRPIVIDGSNVAMSHGNK 33 1 E9PP00;Q9C0D7;Q9C0D7-2 E9PP00 ZC3H12C Probable ribonuclease ZC3H12C 1 0 S(0.018)ES(0.982)PMQEIVTDDGENLRPIVIDGSNVAMSHGNK 251.34 6.97E-52 54527000 14008 12735 14878 19440 16522 17770 22200 21923 16517 24044 TRUE FALSE FALSE 17124.03127 14224.24747 20381.99133 20501.95798 14877.01167 18700.40972 17456.78864 16546.34988 19831.8104 18050.2733 0.948685429 0.78803502 1.129179098 1.135825349 0.824198693 1.036018093 0.967120462 0.916681404 1.098698622 1 14.13973306 -4.750702791 24.99892956 1.007250335 0.868360257 0.256281434 0.098420771 303.9669694 707739.0762 0.025207449 0.06526206 1.78E-05 4.750702791 -0.138890078 SES(ph)PPAELPSLR ddPTM_HeLa_A485_30min_R1 5 SESPPAELPSLR 12 0 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 SES(1)PPAELPSLR;SES(1)PPAELPSLR;SES(1)PPAELPSLR;SES(1)PPAELPSLR;SES(1)PPAELPSLR ;;;; 244.42 5.92E-28 2374600000 1243040 1304010 1484180 1460230 1842790 1161360 1422890 1358180 1445650 2156000 TRUE FALSE FALSE 1519549.96 1456502.626 2033239.944 1539998.667 1659315.357 1222167.014 1118877.928 1025084.225 1735778.695 1618548.878 0.938834767 0.899881768 1.256211642 0.951468743 1.025187055 0.755100467 0.691284608 0.633335353 1.072428963 1 20.6262695 -6.255430938 24.262058 0.798816756 1.017906353 0.250621736 0.154154212 401.0399639 1619398.292 0.051307639 0.050001323 5.55E-07 6.255430938 0.219089596 SES(ph)PPAELPSLR ddPTM_HeLa_A486_30min_R1 4 SESPPAELPSLR 12 0 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 SES(1)PPAELPSLR;SES(1)PPAELPSLR;SES(1)PPAELPSLR;SES(1)PPAELPSLR ;;; 268.98 3.86E-34 2212320000 1240130 1444410 1090980 413962 1431740 1300870 1421310 1318330 1163550 1269290 TRUE FALSE FALSE 1153203.291 1329949.691 1513436.673 963724.4565 1252157.819 1140381.886 1065683.205 1018175.038 1264407.451 951451.5223 1.212046293 1.397811302 1.590660836 1.012899169 1.316050045 1.198570667 1.120060434 1.07012813 1.328924723 1 19.85977063 -5.267803923 24.99673483 1.160196203 1.39993666 0.417458549 0.135276671 498.2500228 1956875.513 0.037201302 0.056723554 5.40E-06 5.267803923 0.239740458 SES(ph)PPAELPSLRR ddPTM_HeLa_A485_30min_R1 4 SESPPAELPSLRR 13 1 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.005)ES(0.995)PPAELPSLRR;S(0.016)ES(0.984)PPAELPSLRR;S(0.02)ES(0.98)PPAELPSLRR;S(0.039)ES(0.961)PPAELPSLRR ;;; 145.46 5.36E-08 1318280000 796610 1179440 958070 791250 1422470 1080640 1407960 1880430 931610 1218590 TRUE FALSE FALSE 973813.1462 1317365.248 1312499.962 834473.9839 1280843.892 1137220.639 1107137.844 1419251.594 1118575.582 914817.9395 1.064488467 1.440029968 1.434711657 0.912174923 1.400107974 1.243111433 1.210227518 1.551403326 1.222730265 1 19.80312513 SES(ph)PPAELPSLRR ddPTM_HeLa_A486_30min_R1 4 SESPPAELPSLRR 13 1 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.005)ES(0.995)PPAELPSLRR;S(0.002)ES(0.998)PPAELPSLRR;S(0.125)ES(0.875)PPAELPSLRR;S(0.007)ES(0.993)PPAELPSLRR ;;; 136.39 5.64E-06 877798000 1155770 1080350 908340 397294 1400350 926400 1193390 1288710 789433 1217870 TRUE FALSE FALSE 1074756.491 994739.1314 1260073.574 924920.5101 1224705.045 812110.1869 894791.1996 995298.8653 857861.6881 912907.425 1.177289681 1.089638559 1.380286259 1.013159149 1.341543525 0.889586572 0.980155463 1.090251693 0.939702827 1 19.80010904 -6.270252187 24.99906035 0.985593552 1.193824196 0.496399894 0.110847089 569.3353973 1615014.522 0.036746315 0.03290662 5.37E-07 6.270252187 0.208230644 SES(ph)PPPLSDPK ddPTM_HeLa_A485_30min_R1 8 SESPPPLSDPK 11 0 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 SES(1)PPPLSDPK;SES(0.999)PPPLS(0.001)DPK;S(0.001)ES(0.999)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK;S(0.002)ES(0.998)PPPLSDPK;SES(1)PPPLSDPK;S(0.007)ES(0.993)PPPLSDPK ;;;;;;; 176.18 9.79E-09 11131140000 5245400 4726600 3620200 7323330 6519380 5729280 8546100 8572740 4632430 9788120 TRUE FALSE FALSE 6412221.134 5279334.754 4959462.629 7723384.974 5870287.636 6029256.242 6720155.92 6470262.073 5562116.21 7348121.821 0.872634027 0.718460429 0.674929288 1.051069261 0.798882732 0.820516642 0.914540625 0.880532772 0.75694393 1 22.80894411 -14 0.116344317 1.491701906 0.753505417 0.183019852 0.10250844 280.6010783 2.133145788 33.32056956 1.109433956 1.00E-14 14 -0.738196489 SES(ph)PPPLSDPK ddPTM_HeLa_A486_30min_R1 7 SESPPPLSDPK 11 0 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK;SES(1)PPPLSDPK ;;;;;; 219.92 7.78E-18 14781930000 6278120 6390610 3198820 2799900 5897710 6891450 8517930 7950420 5056030 8262580 TRUE FALSE FALSE 5838056.208 5884194.789 4437488.771 6518308.699 5157964.218 6041252.966 6386653.821 6140282.922 5494290.751 6193576.188 0.942598594 0.950048019 0.716466325 1.052430535 0.832792568 0.975406257 1.031173853 0.991395397 0.887095046 1 22.56234124 -6.399640909 9.812876929 0.980451674 0.900164919 0.164097211 0.088062202 0.707266982 53.38185381 0.030239965 0.026650349 3.98E-07 6.399640909 -0.080286756 SES(ph)PSKDFGPTLGLK ddPTM_HeLa_A486_30min_R1 1 SESPSKDFGPTLGLK 15 1 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 S(0.17)ES(0.781)PS(0.049)KDFGPTLGLK 74.776 0.0035775 242300000 301920 257060 135090 186800 268770 357170 421890 405580 224360 427030 TRUE FALSE FALSE 280756.9671 236689.6294 187400.4658 434879.8403 235058.3604 313105.9968 316328.6597 313238.2877 243807.7054 320098.9085 0.877094422 0.739426543 0.585445501 1.358579579 0.734330403 0.978153903 0.988221613 0.978567185 0.761663658 1 18.28815823 SES(ph)PSLTQER ddPTM_HeLa_A485_30min_R1 2 SESPSLTQER 10 0 H7BZJ7;Q9BXW9-3;Q9BXW9;Q9BXW9-1 H7BZJ7 FANCD2 Fanconi anemia group D2 protein 1 0 SES(0.999)PS(0.001)LTQER;SES(0.998)PSLT(0.002)QER ; 208.03 4.65E-14 1659060000 1014220 1358830 1391810 1063840 1465710 1151280 1323160 1629750 1233710 1399300 TRUE FALSE FALSE 1239829.74 1517733.348 1906698.437 1121954.885 1319778.766 1211559.241 1040456.057 1230051.257 1481304.281 1050480.262 1.180250391 1.444799491 1.815073072 1.068039949 1.256357509 1.153338415 0.990457502 1.170941808 1.410121003 1 20.00261762 -5.297988238 24.99868657 1.154952631 1.476517157 0.403772374 0.183759392 572.427648 391527.8113 0.052312415 0.077594287 5.04E-06 5.297988238 0.321564526 SES(ph)PSLTQER ddPTM_HeLa_A486_30min_R1 2 SESPSLTQER 10 0 H7BZJ7;Q9BXW9-3;Q9BXW9;Q9BXW9-1 H7BZJ7 FANCD2 Fanconi anemia group D2 protein 1 0 SES(0.995)PSLT(0.005)QER;SES(0.998)PSLT(0.002)QER ; 172.6 1.98E-07 1460630000 1718540 2353900 2243900 484770 2562900 1768160 1761420 1907230 1914570 1534010 TRUE FALSE FALSE 1598079.221 2167368.391 3112798.174 1128569.059 2241437.184 1550022.397 1320694.086 1472995.364 2080526.469 1149883.911 1.389774398 1.884858437 2.707054289 0.981463475 1.949272585 1.347981637 1.148545582 1.280994846 1.809336098 1 20.13305679 -5.282172002 24.99958572 1.38664908 1.982992181 0.322390622 0.42000449 975.6979255 1176503.162 0.117574146 0.174600059 5.22E-06 5.282172002 0.596343101 SES(ph)TENQSYAK ddPTM_HeLa_A485_30min_R1 1 SESTENQSYAK 11 0 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7 Q96RT1-6 ERBB2IP Protein LAP2 1 0 S(0.028)ES(0.954)T(0.018)ENQSYAK 90.731 0.0011919 0 80316 84416 54215 56335 114440 91172 107980 117670 75859 100030 TRUE FALSE FALSE 98182.01711 94287.71688 74271.38457 59412.4384 103045.9518 95945.62494 84909.19088 88811.248 91083.20548 75094.36192 1.307448583 1.255589827 0.989040757 0.791170427 1.372219553 1.277667491 1.130699945 1.182661997 1.212916698 1 16.19641697 SES(ph)TQPLLDSEERPEDLQLVDHVDGGDGILPR ddPTM_HeLa_A485_30min_R1 1 SESTQPLLDSEERPEDLQLVDHVDGGDGILPR 32 1 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 0 S(0.156)ES(0.669)T(0.156)QPLLDS(0.019)EERPEDLQLVDHVDGGDGILPR 81.384 0.00038789 31613000 12682 11951 10690 14805 12133 10415 17782 14552 10666 20407 TRUE FALSE FALSE 15503.06715 13348.56549 14644.67585 15613.75966 10924.99592 10960.3133 13982.73043 10983.09918 12806.56837 15319.91046 1.011955467 0.871321378 0.955924376 1.019180869 0.713124006 0.715429331 0.912716198 0.716916669 0.835942769 1 13.90312025 -5.755504626 24.99994152 0.801372454 0.95731372 0.366319854 0.094637284 147.7575692 622419.6716 0.027195599 0.03418139 1.76E-06 5.755504626 0.155941266 SES(ph)VEGFLSPSR ddPTM_HeLa_A485_30min_R1 4 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.041)ES(0.959)VEGFLSPSR;S(0.094)ES(0.906)VEGFLSPSR;S(0.182)ES(0.817)VEGFLS(0.001)PSR;S(0.054)ES(0.946)VEGFLSPSR ;;; 154.74 6.89E-08 357416000 227562 286166 255596 234458 331921 262233 363298 355169 251341 380500 TRUE FALSE FALSE 278182.3818 319630.6244 350151.5966 247265.8469 298873.7798 275963.1144 285676.4144 268063.2459 301782.8333 285648.3526 0.973863071 1.118965404 1.225813464 0.865630222 1.04629968 0.966093842 1.000098239 0.93843792 1.056483717 1 18.12388068 -5.261957143 24.9999878 0.982085859 1.107489116 0.35882459 0.076167522 50.05994671 2417165.441 0.020563729 0.032760016 5.47E-06 5.261957143 0.125403258 SES(ph)VEGFLSPSR ddPTM_HeLa_A486_30min_R1 2 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.003)ES(0.997)VEGFLSPSR;S(0.396)ES(0.604)VEGFLSPSR ; 179.67 8.61E-13 163309000 209634 220480 171438 70622 235560 209560 228530 253410 199591 239930 TRUE FALSE FALSE 194939.7392 203008.3618 237823.3849 164411.585 206013.8683 183706.6178 171349.3769 195714.0749 216891.7086 179849.9663 1.083902005 1.128765081 1.322343227 0.914159665 1.145476268 1.021443716 0.952735107 1.088207459 1.205959128 1 17.45643436 -5.265235701 24.99893138 1.049658613 1.173379597 0.269010083 0.099146334 471.6863098 3106074.476 0.027741084 0.043046029 5.43E-06 5.265235701 0.123720984 SES(ph)WER ddPTM_HeLa_A485_30min_R1 5 SESWER 6 0 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 SES(1)WER;SES(1)WER;S(0.001)ES(0.999)WER;SES(1)WER;SES(1)WER ;;;; 137.9 0.0050592 1853820000 1809030 2189620 1986860 2102260 2493410 2080070 2729560 2662850 1911280 2567860 TRUE FALSE FALSE 2211442.482 2445677.012 2721882.194 2217101.141 2245157.346 2188979.249 2146367.208 2009781.862 2294856.365 1927739.76 1.14716858 1.268675919 1.411955208 1.150103965 1.164657903 1.135515952 1.113411287 1.042558702 1.190438882 1 20.87847887 -5.476010705 11.97997802 1.115708607 1.27624347 0.475123772 0.078900588 1.211749285 308.2994862 0.022163787 0.032795207 3.34E-06 5.476010705 0.160534863 SES(ph)WER ddPTM_HeLa_A486_30min_R1 3 SESWER 6 0 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 SES(1)WER;SES(1)WER;SES(1)WER ;; 150.4 0.0031592 1743140000 2192240 2359830 1852980 797560 2413730 2314170 2480280 2683600 1977610 2740610 TRUE FALSE FALSE 2038575.297 2172828.476 2570503.481 1856759.986 2110977.476 2028671.234 1859687.71 2072602.863 2149030.827 2054343.418 0.992324496 1.05767539 1.251253057 0.903821615 1.027567961 0.987503461 0.905246754 1.008888215 1.046091325 1 20.97024594 -5.289872422 24.99778125 0.98194019 1.096143533 0.343063364 0.074553432 808.8392479 711113.7769 0.021154281 0.031382916 5.13E-06 5.289872422 0.114203343 SESAPTLHPYSPLS(ph)PK ddPTM_HeLa_A485_30min_R1 5 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 SESAPTLHPYSPLS(1)PK;SESAPTLHPYSPLS(1)PK;SESAPTLHPYSPLS(1)PK;SESAPTLHPYS(0.009)PLS(0.991)PK;SESAPTLHPYS(0.219)PLS(0.781)PK ;;;; 244.52 8.79E-42 6268368000 3074654 2758099 1900017 3914980 3727934 2852124 4914970 4240409 2208118 5619940 TRUE FALSE FALSE 3758600.175 3080634.686 2602912.355 4128845.444 3356767.801 3001456.802 3864846.508 3200442.044 2651267.029 4218992.385 0.890876264 0.730182566 0.616951186 0.978633064 0.795632581 0.711415553 0.916059133 0.758579716 0.628412376 1 22.00846705 -11.05547759 2.749088343 1.309771564 0.781990621 0.252965128 0.113014194 12524998.34 8379521.935 24511373.71 0.028208406 8.80E-12 11.05547759 -0.527780943 SESAPTLHPYSPLS(ph)PK ddPTM_HeLa_A486_30min_R1 4 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 SESAPTLHPYSPLS(1)PK;SESAPTLHPYS(0.005)PLS(0.995)PK;SESAPTLHPYS(0.001)PLS(0.999)PK;SESAPTLHPYS(0.001)PLS(0.999)PK ;;; 213.03 4.57E-26 5759020000 5337600 4738670 2441670 1511960 4387010 4999080 7217200 6476900 3716560 7327400 TRUE FALSE FALSE 4963461.803 4363160.531 3387150.014 3519919.29 3836750.299 4382344.337 5411380.224 5002251.26 4038714.413 5492571.347 0.903668153 0.794374848 0.616678383 0.6408509 0.698534449 0.797867531 0.985218012 0.91073032 0.735304861 1 22.38905027 -6.543969186 5.780600654 0.900356626 0.724953851 0.407227049 0.100406653 0.186063669 20.07545436 0.040573595 0.032031665 2.86E-07 6.543969186 -0.175402775 SESDLEDVGPTAEWNGDGS(ph)GSLRR ddPTM_HeLa_A485_30min_R1 2 SESDLEDVGPTAEWNGDGSGSLRR 24 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 SESDLEDVGPT(0.026)AEWNGDGS(0.53)GS(0.444)LRR;SESDLEDVGPT(0.001)AEWNGDGS(0.5)GS(0.5)LRR ; 84.515 0.0023203 294440000 211342 356478 353260 243907 475564 257792 318788 298300 427722 323511 TRUE FALSE FALSE 258354.2988 398165.0012 483945.5744 257231.0218 428215.1784 271289.5905 250676.3395 225141.4573 513561.8821 242865.6615 1.063774505 1.63944544 1.992647176 1.059149409 1.763177123 1.117035603 1.032160487 0.927020543 2.1145924 1 17.889799 -6.280639973 24.71523275 1.220725506 1.513656859 0.093093445 0.411919267 1715.892568 2208710.063 0.142556049 0.125918037 5.24E-07 6.280639973 0.292931353 SESDLSQPES(ph)DEEGYALSGR ddPTM_HeLa_A485_30min_R1 2 SESDLSQPESDEEGYALSGR 20 0 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 SESDLSQPES(1)DEEGYALSGR;SESDLSQPES(1)DEEGYALSGR ; 325.98 1.17E-105 287830000 130954 152498 166036 153244 189434 135043 158480 144341 135116 187600 TRUE FALSE FALSE 160084.2655 170331.3145 227459.6257 161615.3317 170573.2858 142113.6427 124619.4533 108941.1434 162232.5418 140834.7725 1.136681394 1.209440762 1.61508143 1.147552758 1.211158883 1.009080642 0.884862816 0.773538676 1.151935271 1 17.10364406 -6.171080006 1.839466559 0.933071379 1.298373509 0.494359932 0.153358934 0.286061621 1.912991576 0.062314002 0.060758754 6.74E-07 6.171080006 0.36530213 SESDLSQPES(ph)DEEGYALSGR ddPTM_HeLa_A486_30min_R1 1 SESDLSQPESDEEGYALSGR 20 0 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 SESDLSQPES(1)DEEGYALSGR 346.18 1.51E-127 474390000 298950 348530 272560 100030 346630 334440 307510 300560 305090 296650 TRUE FALSE FALSE 277995.1488 320911.2135 378102.5314 232874.8952 303152.4332 293180.1931 230567.7455 232129.0492 331535.4468 222366.9091 1.250164199 1.443160831 1.700354306 1.04725517 1.363298318 1.318452436 1.036879752 1.043901047 1.490938774 1 17.76258259 -5.273705202 24.9808219 1.19436284 1.4624199 0.32306336 0.184604497 895.7594048 1824319.77 0.051933826 0.077656307 5.32E-06 5.273705202 0.26805706 SESELIDELS(ph)EDFDRSECK ddPTM_HeLa_A485_30min_R1 3 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 SESELIDELS(1)EDFDRSECK;SESELIDELS(1)EDFDRSECK;SESELIDELS(0.997)EDFDRS(0.002)ECK ;; 203.64 6.53E-26 306517000 146469 152142 146850 247252 264145 191497 322792 295766 179106 356989 TRUE FALSE FALSE 179050.5237 169933.6834 201175.9259 260758.7507 237845.7963 201523.4868 253824.8522 223228.9248 215050.9313 267998.2122 0.668103426 0.634085138 0.750661448 0.972986904 0.887490235 0.751958325 0.947113976 0.832949306 0.802434201 1 18.03186385 -5.014539395 4.663103601 0.875156457 0.656642599 0.626992678 0.073248518 0.120677464 6.928073012 0.019595401 0.038605872 9.67E-06 5.014539395 -0.218513858 SESELIDELS(ph)EDFDRSECK ddPTM_HeLa_A486_30min_R1 3 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;P20810-4;B7Z574;E7ES10;P20810;P20810-8;E9PDE4;E9PCH5;P20810-2;P20810-3;E7EQA0;H0Y7F0;E7EQ12;D6RC54;E7EVY3;A0A0A0MR45;H0YD33;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 SESELIDELS(1)EDFDRSECK;SESELIDELS(1)EDFDRSECK;SESELIDELS(1)EDFDRSECK ;; 287.64 1.25E-70 319045000 226657 298778 189666 185906 371800 340649 455600 458217 245147 418020 TRUE FALSE FALSE 210769.5148 275101.7431 263109.7546 432798.5632 325165.3771 298623.1898 341604.0612 353890.9919 266396.5393 313345.0711 0.672643466 0.877951398 0.839680528 1.381220268 1.037722968 0.953017032 1.090184888 1.129397027 0.850169873 1 18.25739277 -5.0290845 24.72630377 1.067552288 0.796176915 0.441717736 0.138021276 533.5099166 453565.6413 0.037143409 0.06449348 9.35E-06 5.0290845 -0.271375373 SESGGLGVSMVEYVLSS(ph)SPADKLDSR ddPTM_HeLa_A485_30min_R1 2 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 0 SESGGLGVSMVEYVLS(0.009)S(0.557)S(0.434)PADKLDSR;SESGGLGVSMVEYVLS(0.085)S(0.506)S(0.409)PADKLDSR ; 163.1 5.70E-14 247290000 85569 80614.4 61134.4 113444.1 112133.6 88786.5 136041 141867 71784.2 165600 TRUE FALSE FALSE 104603.5288 90041.55283 83750.55857 119641.2639 100969.1851 93435.22385 106974.729 107073.8958 86190.6305 124318.9676 0.841412464 0.724278479 0.673674823 0.962373371 0.812178439 0.751576575 0.860485982 0.861283663 0.693302335 1 16.9236869 -10.60447274 2.775272329 1.015992034 0.799633815 0.340922979 0.084291551 30536727.6 29199000.14 3547390.286 0.021867179 2.49E-11 10.60447274 -0.216358219 SESGGLGVSMVEYVLSS(ph)SPADKLDSR ddPTM_HeLa_A486_30min_R1 2 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 0 SESGGLGVS(0.001)MVEY(0.005)VLS(0.267)S(0.394)S(0.333)PADKLDSR;SESGGLGVS(0.001)MVEY(0.014)VLS(0.081)S(0.443)S(0.443)PADKLDS(0.019)R ; 59.228 0.012519 195433000 61553 58782 41098.4 47580 61996 72273 98305 85354 59913 96347 TRUE FALSE FALSE 57238.45256 54123.90024 57012.80113 110768.6446 54219.88359 63356.69208 73708.04924 65920.75746 65106.30708 72221.08409 0.79254491 0.749419659 0.789420456 1.533743864 0.750748681 0.87726033 1.020589073 0.912763334 0.901486151 1 16.14013246 -5.041533204 24.99921525 0.995165354 0.770590257 0.214406913 0.195159868 739.8007807 445292.047 0.053100274 0.091984704 9.09E-06 5.041533204 -0.224575097 SESGGLGVSMVEYVLSS(ph)SPGDSCLRK ddPTM_HeLa_A486_30min_R1 1 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEYVLS(0.076)S(0.533)S(0.39)PGDSCLRK 149.57 2.53E-09 370080000 137370 151480 95801 100940 162410 145860 195920 180740 116400 197350 TRUE FALSE FALSE 127741.0724 139476.1731 132897.7128 234993.4212 142039.0234 127865.2762 146898.7438 139589.4475 126489.6457 147932.2755 0.863510495 0.942838016 0.898368611 1.588520291 0.9601625 0.864350094 0.993013481 0.943603734 0.855051038 1 17.17457732 -5.976475871 24.99998035 0.929398805 1.079349951 0.108453082 0.193964667 548.5996411 583014.7857 0.063003247 0.07143573 1.06E-06 5.976475871 0.149951146 SESGGLGVSMVEYVLSSS(ph)PADKLDSR ddPTM_HeLa_A485_30min_R1 1 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 0 SESGGLGVSMVEYVLS(0.002)S(0.192)S(0.805)PADKLDSR 167.26 4.15E-14 191790000 31482 28660 19607 41871 37929 27782 46041 44939 25162 52066 TRUE FALSE FALSE 38485.06229 32011.53769 26860.44522 44158.30671 34152.65558 29236.62256 36203.96423 33917.63979 30211.7826 39086.9044 0.984602462 0.818983703 0.687198069 1.129746839 0.873762098 0.747990229 0.926242812 0.86774945 0.772938739 1 15.25439771 -10.59263085 2.588427855 1.011717918 0.867038717 0.098558147 0.120027881 46820502.3 42427615.85 3739609.709 0.031841757 2.55E-11 10.59263085 -0.144679201 SESGGLGVSMVEYVLSSS(ph)PADKLDSR ddPTM_HeLa_A486_30min_R1 1 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 0 SESGGLGVSMVEYVLS(0.006)S(0.167)S(0.827)PADKLDSR 117.03 9.69E-05 175720000 101200 88935 61506 66070 85962 100640 133450 116560 60350 137050 TRUE FALSE FALSE 94106.4026 81887.4667 85322.77039 153814.299 75179.8444 88224.06003 100059.3985 90021.83249 65581.18659 102731.788 0.916039762 0.797099596 0.830539136 1.497241526 0.731807028 0.858780537 0.973986733 0.876280208 0.638372873 1 16.64852313 SESGGLGVSMVEYVLSSS(ph)PGDSCLR ddPTM_HeLa_A485_30min_R1 4 SESGGLGVSMVEYVLSSSPGDSCLR 25 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEYVLSS(0.177)S(0.82)PGDS(0.003)CLR;SESGGLGVSMVEYVLS(0.001)S(0.185)S(0.812)PGDS(0.001)CLR;SESGGLGVSMVEYVLS(0.002)S(0.196)S(0.802)PGDSCLR;SESGGLGVSMVEYVLS(0.001)S(0.194)S(0.805)PGDSCLR ;;; 147.87 2.88E-09 107149000 119939 140755 153591 144084 197345 131908 183243 172436 139233 208478 TRUE FALSE FALSE 146619.0168 157215.0728 210410.7024 151954.9441 177696.6389 138814.4989 144091.6361 130145.8006 167175.786 156508.2714 0.936813214 1.004516065 1.344406277 0.970906795 1.135381775 0.886946726 0.920664671 0.83155861 1.06815943 1 17.25587938 -6.263631675 24.77375874 0.929638222 1.083105641 0.238820328 0.121177063 243.1313536 2747456.686 0.041621005 0.038491674 5.45E-07 6.263631675 0.153467418 SESGGLGVSMVEYVLSSS(ph)PGDSCLR ddPTM_HeLa_A486_30min_R1 4 SESGGLGVSMVEYVLSSSPGDSCLR 25 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEYVLS(0.002)S(0.202)S(0.796)PGDSCLR;SESGGLGVSMVEYVLS(0.002)S(0.121)S(0.876)PGDSCLR;SESGGLGVSMVEYVLS(0.007)S(0.176)S(0.817)PGDSCLR;SESGGLGVSMVEYVLS(0.001)S(0.171)S(0.828)PGDSCLR ;;; 144.5 3.69E-09 151745000 118013 146198 130217 87604 167373 140634 160680 153569 132418 142686 TRUE FALSE FALSE 109740.8981 134612.738 180640.5097 203946.5393 146379.5176 123284.0069 120476.1645 118604.6911 143896.0989 106956.4969 1.026033026 1.258574673 1.688915728 1.90681768 1.368589304 1.152655617 1.126403426 1.108905906 1.345370343 1 16.70666459 -6.148900893 4.360247648 1.152848545 1.486861945 0.297919306 0.234216128 0.321376769 10.10787377 0.086772816 0.086907963 7.10E-07 6.148900893 0.3340134 SESGGLGVSMVEYVLSSS(ph)PGDSCLRK ddPTM_HeLa_A485_30min_R1 1 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEYVLS(0.084)S(0.456)S(0.457)PGDS(0.003)CLRK 112.35 0.00020535 444540000 89740 89545 74703 88406 128500 83193 128430 138710 80485 146290 TRUE FALSE FALSE 109702.3534 100016.5088 102338.7484 93235.39592 115706.0888 87548.85684 100989.8813 104691.155 96637.60125 109822.5953 0.998905126 0.910709755 0.931855126 0.848963692 1.053572705 0.797184374 0.91957289 0.953275187 0.879942793 1 16.74481538 -6.264531612 24.99513686 0.907673373 0.940197095 0.063960006 0.07020358 993.1179813 8027554.689 0.023379775 0.021458849 5.44E-07 6.264531612 0.032523722 SESGGLGVSMVEYVLSSS(ph)PGDSCLRK ddPTM_HeLa_A486_30min_R1 1 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEYVLS(0.018)S(0.449)S(0.534)PGDSCLRK 139.64 6.14E-07 459010000 292140 299670 235030 192910 354560 335990 394560 386500 266800 353540 TRUE FALSE FALSE 271662.4946 275923.0578 326039.9103 449104.2291 310087.7787 294538.9699 295836.9148 298502.3872 289926.4388 265011.2828 1.025097844 1.041174756 1.230286903 1.694660787 1.170092742 1.11142049 1.116318187 1.126376145 1.094015454 1 18.01569426 -5.995320566 24.99994299 1.103810979 1.256867193 0.151603288 0.174415078 293.39742 1567459.089 0.059451282 0.067181954 1.01E-06 5.995320566 0.153056215 SESGS(ph)PSAGGHSKPPHS(ph)PLVLK ddPTM_HeLa_A486_30min_R1 1 SESGSPSAGGHSKPPHSPLVLK 22 1 H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 2 0 S(0.048)ES(0.423)GS(0.529)PS(0.001)AGGHSKPPHS(1)PLVLK 183.48 4.42E-19 262860000 132760 145770 91390 17065 150880 133090 134490 144950 137370 71574 TRUE FALSE FALSE 123454.2096 134218.6543 126778.6555 39728.18242 131955.2235 116670.709 100839.1795 111948.0492 149277.3422 53651.40453 2.301043386 2.501680161 2.363007206 0.740487276 2.459492434 2.174606797 1.879525436 2.086581893 2.78235665 1 15.71132832 -10.8338901 2.623214878 0.589462986 2.119756616 0.298196627 0.525029969 36540457.6 26507064.19 94771155.4 0.13600647 1.47E-11 10.8338901 1.53029363 SESLDPDS(ph)SMDTTLILK ddPTM_HeLa_A486_30min_R1 1 SESLDPDSSMDTTLILK 17 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 SESLDPDS(0.438)S(0.438)MDT(0.062)T(0.062)LILK 102.28 0.00016252 0 26097 24364 17718 9605.4 34631 24111 28442 31254 17579 27999 TRUE FALSE FALSE 24267.73507 22433.30791 24578.8841 22361.85663 30287.25706 21136.42996 21325.51077 24138.14647 19102.76187 20987.86816 1.156274419 1.068870251 1.171099605 1.065465843 1.443084016 1.007078461 1.016087514 1.150099967 0.910181145 1 14.35726801 SESLIDASEDS(ph)QLEAAIR ddPTM_HeLa_A485_30min_R1 1 SESLIDASEDSQLEAAIR 18 0 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 SESLIDASEDS(1)QLEAAIR 174.78 1.21E-12 227850000 150100 177650 164680 119290 236390 160360 226730 253740 192320 207330 TRUE FALSE FALSE 183489.2272 198424.6222 225601.9849 125806.5106 212854.1816 168756.2016 178287.2833 191509.8672 230916.8599 155646.4466 1.178884781 1.274841967 1.44945156 0.80828386 1.367549252 1.084227782 1.145463242 1.230415929 1.483598662 1 17.24791312 SESLIDASEDS(ph)QLEAAIR ddPTM_HeLa_A486_30min_R1 5 SESLIDASEDSQLEAAIR 18 0 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 SESLIDAS(0.007)EDS(0.993)QLEAAIR;SESLIDASEDS(1)QLEAAIR;SESLIDASEDS(1)QLEAAIR;SESLIDAS(0.038)EDS(0.962)QLEAAIR;SESLIDAS(0.001)EDS(0.999)QLEAAIR ;;;; 341.36 4.25E-102 864403000 624228 670776 751285 254905 968958 649496 785410 834928 643535 797652 TRUE FALSE FALSE 580472.8407 617621.2668 1042202.672 593431.7222 847422.2525 569367.7871 588892.1108 644833.1208 699317.1319 597914.7474 0.970828773 1.032958745 1.743062329 0.992502233 1.417296122 0.952255802 0.984909828 1.078470005 1.169593383 1 19.18958027 -6.279904769 24.89094796 1.038691683 1.235470458 0.160964271 0.221668256 1533.397031 2066980.275 0.07816667 0.069063071 5.25E-07 6.279904769 0.196778775 SESPKEPEQLR ddPTM_HeLa_A485_30min_R1 1 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 113.61 0.0017054 53141000 105140 71148 57460 144810 99575 93966 138260 119010 94112 191530 FALSE FALSE TRUE 128528.0303 79468.13969 78716.84511 152720.6036 89660.96337 98885.91446 108719.6215 89822.6109 112999.4152 143785.0958 0.893889798 0.552686906 0.547461784 1.062144882 0.623576198 0.687734107 0.756125806 0.624700428 0.785891017 1 17.13355461 -8.022337945 21.5347297 1.000000009 0.715164992 0.240440845 0.150287618 403.4073916 388903.8426 0.141880995 0.036633515 9.50E-09 8.022337945 -0.284835017 SESPKEPEQLR ddPTM_HeLa_A486_30min_R1 3 SESPKEPEQLR 11 1 F8W6I7;P09651-2;P09651;P09651-3;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ;; ;; 105.17 0.00095937 334027000 367814 384113 346653 144653 691310 408437 392294 473421 305640 398931 FALSE FALSE TRUE 342032.138 353674.487 480886.3253 336759.4944 604599.4536 358048.1956 294137.8919 365633.373 332133.1213 299036.081 1.143782171 1.182715095 1.608121414 1.126150039 2.021827773 1.197341118 0.983620073 1.222706544 1.110679087 1 18.18996004 -6.509091962 24.9197235 1.09676314 1.419197235 0.2809625 0.255876861 876.0671112 1583503.531 0.092041773 0.077856959 3.10E-07 6.509091962 0.322434095 SESPMQEIVT(ph)DDGENLRPIVIDGSNVAMSHGNK ddPTM_HeLa_A486_30min_R1 1 SESPMQEIVTDDGENLRPIVIDGSNVAMSHGNK 33 1 E9PP00;Q9C0D7;Q9C0D7-2 E9PP00 ZC3H12C Probable ribonuclease ZC3H12C 1 0 S(0.07)ES(0.362)PMQEIVT(0.568)DDGENLRPIVIDGSNVAMSHGNK 82.384 0.00051449 63933000 33225 33934 23299 16680 35045 37899 51685 48403 33894 48120 TRUE FALSE FALSE 30896.09907 31244.94625 32320.99677 38831.88296 30649.32932 33223.40671 38752.86633 37382.69353 36831.95921 36070.43879 0.856549022 0.866220298 0.89605222 1.076556989 0.849707693 0.921070212 1.074366368 1.036380338 1.021112036 1 15.13852935 -4.469068852 0.364003346 1.033965221 0.726349682 0.421079115 0.065936804 5.565969329 0.659266699 0.065474153 0.745908785 3.40E-05 4.469068852 -0.307615539 SESQERPGS(ph)R ddPTM_HeLa_A486_30min_R1 1 SESQERPGSR 10 1 A0A3B3ISF0;Q659C4-9;Q659C4;H0Y9K3;D6R9W6;A0A3B3IT29;A0A3B3ISF8;G3V0E9;Q659C4-3 A0A3B3ISF0 LARP1B La-related protein 1B 1 0 SES(0.317)QERPGS(0.682)R 97.163 0.0048577 0 273710 224380 220530 102530 276440 282180 313390 294680 244770 280610 TRUE FALSE FALSE 254524.3424 206599.3116 305925.122 238695.0216 241766.3175 247367.5006 234976.5073 227587.7968 265986.8607 210343.4295 1.210041802 0.982199977 1.454407788 1.134787153 1.149388493 1.176017245 1.117108853 1.081981963 1.264536103 1 17.68238723 -6.209161517 1.41657801 1.125704261 1.194702338 0.067450629 0.124481705 1.459770196 5.904029431 0.055538486 0.052384576 6.18E-07 6.209161517 0.068998077 SESQESLVT(ph)SPSKPK ddPTM_HeLa_A485_30min_R1 1 SESQESLVTSPSKPK 15 1 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 SESQESLVT(0.497)S(0.497)PS(0.005)KPK 98.391 0.0008237 373210000 277220 190250 103280 499530 286630 242600 468460 354890 195440 609050 TRUE FALSE FALSE 338886.6326 212498.0825 141487.5698 526818.059 258092.1108 255302.1609 368369.694 267852.6711 234663.0153 457225.0437 0.741181257 0.464756 0.309448425 1.152207357 0.564475009 0.558373091 0.805663861 0.585822397 0.513233075 1 18.8025449 -10.85302066 2.513163013 1.156645585 0.633124339 0.20489553 0.217006737 45427810.8 26970973.02 42623090.19 0.053568936 1.40E-11 10.85302066 -0.523521247 SESQESLVTS(ph)PSKPK ddPTM_HeLa_A486_30min_R1 1 SESQESLVTSPSKPK 15 1 E7EWD6;Q76L83;Q76L83-2;A0A5F9ZHN2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 SESQESLVT(0.177)S(0.819)PS(0.004)KPK 91.317 0.0002119 0 378520 299470 144750 244190 285090 476880 581020 530940 242080 736480 TRUE FALSE FALSE 351987.7027 275738.9065 200801.0765 568486.6607 249331.3538 418047.3942 435642.6506 410056.5523 263063.6893 552060.6143 0.637588869 0.499472158 0.363730126 1.029754063 0.451637642 0.757249083 0.789121048 0.74277451 0.476512329 1 19.07446715 -14 0.120759057 2.064748952 0.484524038 0.236653933 0.190266113 228.8398485 1.785201508 60.68316063 1.786558393 1.00E-14 14 -1.580224914 SESS(ph)DFEVVPK ddPTM_HeLa_A485_30min_R1 1 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 SES(0.159)S(0.841)DFEVVPK 145.95 8.99E-07 121790000 279780 229210 196120 303100 276660 276440 368620 395010 216760 419450 TRUE FALSE FALSE 342016.0958 256014.1156 268672.9492 319657.5855 249114.759 290913.9709 289861.3257 298133.1781 260261.7438 314888.8344 1.086148692 0.813030148 0.853231109 1.015144237 0.791119696 0.923862453 0.920519542 0.946788662 0.826519442 1 18.26448308 -10.34854217 6.147086967 1.000009334 0.905670229 0.08785419 0.088044271 1.06E-05 1.12E-06 0.079859277 0.019366803 4.48E-11 10.34854217 -0.094339105 SESS(ph)DFEVVPK ddPTM_HeLa_A486_30min_R1 1 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 SES(0.115)S(0.885)DFEVVPK 173.76 2.01E-08 122620000 484910 437250 268350 172910 515170 473130 534300 522470 372990 591190 TRUE FALSE FALSE 450920.3131 402600.7176 372262.3067 402543.2184 450552.5748 414760.031 400612.4888 403514.9864 405321.0735 443152.176 1.017529277 0.908493153 0.840032672 0.908363402 1.016699453 0.935931388 0.904006593 0.910556257 0.914631803 1 18.75744267 SESSTSAFST(ph)PTR ddPTM_HeLa_A485_30min_R1 2 SESSTSAFSTPTR 13 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 SESSTSAFS(0.058)T(0.94)PT(0.001)R;SESSTSAFS(0.046)T(0.953)PT(0.001)R ; 110.9 0.00062135 0 423160 506290 474280 425360 670440 507750 589250 670200 454950 578060 TRUE FALSE FALSE 517290.4821 565496.2114 649735.9084 448596.3397 603688.6395 534335.0049 463351.9238 505832.3992 546254.292 433960.2804 1.192022647 1.303105922 1.497224372 1.033726726 1.391114963 1.231299335 1.067728879 1.165619118 1.258765644 1 18.72720348 -8.707605682 0.194181685 0.8844078 1.352316013 0.272358154 0.127765719 10.58714317 0.922679082 1.384951819 0.520397642 1.96E-09 8.707605682 0.467908213 SESSTSAFST(ph)PTR ddPTM_HeLa_A486_30min_R1 1 SESSTSAFSTPTR 13 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 SESSTSAFS(0.059)T(0.939)PT(0.001)R 77.279 0.033272 397220000 511840 497900 424320 160480 555860 438830 538440 461790 473270 531830 TRUE FALSE FALSE 475962.6591 458444.5907 588628.0677 373605.5502 486138.8556 384691.6163 403716.617 356650.4978 514293.4247 398656.3064 1.193917296 1.14997451 1.47653018 0.937162022 1.219443535 0.964970603 1.012693417 0.894631521 1.290067199 1 18.60478597 -5.280562067 24.99453941 1.043693501 1.261124087 0.354782153 0.140532822 875.6730052 1144556.639 0.038223474 0.056795156 5.24E-06 5.280562067 0.217430586 SEST(ph)QPLLDSEERPEDLQLVDHVDGGDGILPR ddPTM_HeLa_A486_30min_R1 1 SESTQPLLDSEERPEDLQLVDHVDGGDGILPR 32 1 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 0 S(0.283)ES(0.283)T(0.306)QPLLDS(0.128)EERPEDLQLVDHVDGGDGILPR 54.634 0.0242 68012000 9769.9 9590.2 7744.3 3389 9345 5430.8 7742.2 8844.4 7413.6 9887.2 TRUE FALSE FALSE 9085.080462 8830.237625 10743.10036 7889.763271 8172.862961 4760.803112 5805.019671 6830.723192 8056.216817 7411.380765 1.225828324 1.191442985 1.44954101 1.064547015 1.102744984 0.642363854 0.783257514 0.921653253 1.087006197 1 12.85552663 -5.766222294 2.167878352 0.880429009 1.270437676 0.569448212 0.142420878 0.220640397 2.130627265 0.049399832 0.063314211 1.71E-06 5.766222294 0.390008667 SESTNHEQQS(ph)PQSGK ddPTM_HeLa_A486_30min_R1 1 SESTNHEQQSPQSGK 15 0 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SESTNHEQQS(0.999)PQS(0.001)GK 78.794 0.0038259 75171000 88980 84388 68705 6269 107460 98997 114090 103480 88718 70585 TRUE FALSE FALSE 82742.96149 77700.78754 95309.41598 14594.54882 93981.36478 86783.75667 85543.47528 79919.86295 96408.14767 52910.05657 1.563841864 1.468544783 1.801347838 0.275836954 1.776247671 1.640212888 1.616771571 1.510485305 1.822113865 1 15.69125434 SESVEGFLS(ph)PSR ddPTM_HeLa_A485_30min_R1 5 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SESVEGFLS(0.995)PS(0.005)R;SESVEGFLS(0.993)PS(0.007)R;SESVEGFLS(0.912)PS(0.088)R;SESVEGFLS(0.999)PS(0.001)R;SESVEGFLS(0.996)PS(0.004)R ;;;; 204.83 3.45E-17 2466378000 587951 763450 675938 567009 895120 657802 872010 882890 595085 794878 TRUE FALSE FALSE 718738.6715 852728.8364 925995.5943 597983.2659 805998.7098 692243.4956 685697.9398 666359.8432 714513.1011 596729.5432 1.204463026 1.429003886 1.551784397 1.00210099 1.350693491 1.160062382 1.149093333 1.11668653 1.197381811 1 19.18671768 -6.232773688 0.34127772 1.026686428 1.425579625 0.336317001 0.137922304 2.264136826 0.539858273 0.166541397 0.335271123 5.85E-07 6.232773688 0.398893196 SESVEGFLS(ph)PSR ddPTM_HeLa_A486_30min_R1 6 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SESVEGFLS(0.979)PS(0.021)R;SESVEGFLS(0.932)PS(0.068)R;SESVEGFLS(0.986)PS(0.014)R;SESVEGFLS(0.98)PS(0.02)R;SESVEGFLS(0.876)PS(0.124)R;SESVEGFLS(0.997)PS(0.003)R ;;;;; 231.36 1.08E-23 2701984000 557196 640253 526381 199892 708417 577696 652935 665198 537453 590218 TRUE FALSE FALSE 518139.4378 589517.0205 730209.8202 465358.678 619560.7341 506425.7411 489563.757 513746.9366 584039.8588 442423.5711 1.171138862 1.332472 1.650476755 1.051839704 1.400379127 1.144662658 1.106549897 1.161210591 1.320092095 1 18.75506872 -6.030569669 1.314227737 1.154117801 1.347410638 0.193852988 0.165472915 0.738753753 2.637363036 0.071655189 0.078904583 9.32E-07 6.030569669 0.193292838 SESVEGFLSPS(ph)R ddPTM_HeLa_A485_30min_R1 1 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SESVEGFLS(0.091)PS(0.909)R 145.81 1.87E-07 97711000 89442 112890 100360 85848 132730 107310 135860 136620 103230 116440 TRUE FALSE FALSE 109338.0643 126091.5035 137487.3403 90537.65886 119514.9352 112928.5857 106832.4011 103113.7308 123947.3141 87413.65092 1.250812238 1.44246925 1.572836037 1.035738216 1.367234224 1.291887302 1.2221478 1.179606729 1.417940022 1 16.41557097 -14 0.13325602 4.07E-11 1.42563228 0.291456118 0.143649065 182.4708502 1.517680326 48.99617777 1.020244476 1.00E-14 14 1.42563228 SET(ph)PPHWR ddPTM_HeLa_A485_30min_R1 3 SETPPHWR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(0.035)ET(0.965)PPHWR;S(0.015)ET(0.985)PPHWR;S(0.001)ET(0.999)PPHWR ;; 107.21 0.00085863 648300000 521570 686040 594520 735360 799830 678520 842640 859700 557100 978230 TRUE FALSE FALSE 637591.4471 766266.4102 814457.688 775530.8548 720196.1168 714046.258 662603.0803 648857.227 668904.86 734375.264 0.868209318 1.043426226 1.109048368 1.056041635 0.980692232 0.972317959 0.9022677 0.883549949 0.910848844 1 19.48615794 -6.365330027 1.978612775 0.91566814 1.024751137 0.273845882 0.065454907 0.396531048 3.0590587 0.02846497 0.024297509 4.31E-07 6.365330027 0.109082997 SET(ph)PPHWR ddPTM_HeLa_A486_30min_R1 2 SETPPHWR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(0.119)ET(0.881)PPHWR;S(0.002)ET(0.998)PPHWR ; 106.18 0.0017756 1407320000 839880 904850 635070 347140 884120 931430 1083380 1024260 795290 1078550 TRUE FALSE FALSE 781008.7491 833146.3906 880986.1118 808159.4635 773225.4255 816519.6367 812306.8652 791058.3574 864226.3775 808474.0598 0.96602821 1.030517158 1.089690017 0.999610876 0.956401032 1.009951558 1.00474079 0.978458551 1.068959934 1 19.62484196 -4.248417198 23.55738223 1.01418258 0.96602814 0.133790242 0.03755555 2106.575928 3810684.638 0.009773346 0.160505414 5.64E-05 4.248417198 -0.04815444 SETAPAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_A485_30min_R1 2 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK ; 176.14 4.64E-14 963240000 575470 406990 294420 1136620 821850 558620 993590 1469620 588650 2919970 TRUE FALSE FALSE 703481.3162 454583.9402 403338.2098 1198710.673 740023.7283 587868.4794 781301.3796 1109193.391 706786.6556 2192075.217 0.320920245 0.207376068 0.183998344 0.546838294 0.337590482 0.268178973 0.356420881 0.50600152 0.322428104 1 21.06386587 -14 0.229512352 4.559689972 0.264984136 0.789264224 0.10384827 71.78042346 0.718681321 118.4982565 0.185892139 1.00E-14 14 -4.294705836 SETAPAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_A486_30min_R1 2 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK ; 218.93 3.21E-35 1089190000 1567110 1547130 607100 905730 1181770 1832140 2755500 2226500 973390 2780000 TRUE FALSE FALSE 1457263.682 1424529.784 842185.3787 2108585.213 1033541.387 1606109.195 2066044.755 1719574.554 1057764.229 2083869.905 0.699306458 0.683598233 0.404144892 1.011860293 0.495972126 0.770733907 0.991446131 0.825183256 0.507596096 1 20.99083378 -6.510815603 24.3635186 0.825717122 0.662547764 0.150287159 0.194261409 860.6463639 1738226.668 0.069147322 0.057803212 3.08E-07 6.510815603 -0.163169358 SETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_A485_30min_R1 4 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK ;;; 285.6 2.96E-73 8229210000 2546300 2056030 1405470 5988250 4076360 2438570 5118870 9740560 2906860 15452000 TRUE FALSE FALSE 3112715.65 2296464.823 1925411.839 6315372.934 3670503.285 2566249.754 4025181.607 7351672.387 3490240.139 11600100.77 0.268335225 0.197969386 0.165982337 0.544423972 0.316419948 0.221226505 0.3469954 0.633759355 0.300880157 1 23.467634 -14 0.171162472 3.652011589 0.17829532 0.718692359 0.129916708 70.3339684 0.664742473 63.06204075 0.466784463 1.00E-14 14 -3.473716269 SETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_A486_30min_R1 5 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK;SETAPAETATPAPVEKS(1)PAK ;;;; 255.99 6.72E-59 4226000000 2803098 2714147 1054272 2161071 2180461 3506975 5901720 4925103 1590538 6065330 TRUE FALSE FALSE 2606615.305 2499068.107 1462514.353 5031082.502 1906967.249 3074320.081 4425047.234 3803764.561 1728407.114 4546531.889 0.573319482 0.549664704 0.321676915 1.106575875 0.419433383 0.67619015 0.973279709 0.836629909 0.380159461 1 22.11633504 -7.310702191 0.068010991 1.47218879 1.41E-15 0.159829137 0.244126686 40.05843681 2.711672906 27.77857944 28.83881504 4.89E-08 7.310702191 -1.47218879 SETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_A485_30min_R1 1 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETATPAPVEKS(1)PAKK 210.88 2.62E-27 317440000 264810 168630 94051 685220 353240 252350 609380 1061200 243590 1978800 TRUE FALSE FALSE 323716.0709 188349.8116 128844.3787 722651.8335 318070.1853 265562.6558 479180.9848 800939.0361 292476.2787 1485521.577 0.217914082 0.126790357 0.086733428 0.486463371 0.214113474 0.178767283 0.322567502 0.539163516 0.196884571 1 20.50253813 -14 0.194779959 4.263942618 0.139585775 0.743580626 0.132412031 68.12654521 0.670275188 86.19209826 0.33860066 1.00E-14 14 -4.124356843 SETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_A486_30min_R1 1 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETATPAPVEKS(1)PAKK 143.19 1.02E-09 242630000 201340 171120 47589 152580 111190 227770 360670 304750 89297 401080 TRUE FALSE FALSE 187227.1057 157559.828 66016.73528 355213.951 97243.51339 199670.0532 270426.5512 235365.0776 97037.33586 300646.9574 0.622747382 0.524069258 0.21958225 1.181498572 0.323447522 0.664134621 0.899482082 0.782861998 0.322761743 1 18.19771083 -14 0.149425286 2.223070016 0.515833334 0.129951514 0.279907124 286.1264049 2.540931284 105.8909243 1.414392846 1.00E-14 14 -1.707236681 SETS(ph)PVAPR ddPTM_HeLa_A485_30min_R1 1 SETSPVAPR 9 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7;H0Y8T6 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 SET(0.203)S(0.797)PVAPR 146.11 9.53E-05 2758900000 1558900 1904200 1709500 1675700 2344300 1813800 2131000 2261200 1801200 2161500 TRUE FALSE FALSE 1905671.927 2126879.626 2341915.188 1767239.248 2110893.261 1908767.763 1675694.441 1706637.155 2162684.318 1622677.829 1.174399435 1.310722059 1.443241009 1.089088182 1.300870217 1.176307292 1.032672297 1.051741217 1.332787248 1 20.62994516 -6.485255294 4.903151323 1.10750346 1.265285112 0.279625159 0.1206158 0.276275343 16.19317558 0.044428037 0.037477019 3.27E-07 6.485255294 0.157781652 SETS(ph)PVAPR ddPTM_HeLa_A486_30min_R1 1 SETSPVAPR 9 0 A0A2R8Y661;A0A2R8YGD3;Q9Y4G8;H0Y8H7;H0Y8T6 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 S(0.001)ET(0.35)S(0.649)PVAPR 107.08 0.0010816 2525100000 9199400 11932000 9574200 4761900 10276000 12099000 12403000 11893000 11925000 12550000 TRUE FALSE FALSE 8554569.566 10986464.86 13281586.65 11085943.85 8987088.26 10606348.39 9299638.214 9185223.522 12958668.6 9407398.313 0.909344888 1.167853693 1.411823567 1.178428242 0.955321329 1.127447573 0.988545175 0.976382972 1.3774976 1 23.16536436 -5.573338116 23.7120587 1.068259159 1.185431131 0.074126474 0.160974413 152.1658055 71504.89864 0.048079034 0.062069775 2.67E-06 5.573338116 0.117171972 SETSWES(ph)PK ddPTM_HeLa_A485_30min_R1 3 SETSWESPK 9 0 E5RJU9;Q86UE4 E5RJU9 MTDH Protein LYRIC 1 0 SETSWES(1)PK;SETSWES(1)PK;SETSWES(1)PK ;; 178.76 4.03E-08 1573710000 2018520 1431590 731950 2236950 1374110 1265720 1966410 2189420 1119720 4735100 TRUE FALSE FALSE 2467532.81 1599001.997 1002728.764 2359148.914 1237298.784 1331991.142 1546270.439 1652461.312 1344437.533 3554726.713 0.694155419 0.449824171 0.282083222 0.66366534 0.348071422 0.374709858 0.434989962 0.464863109 0.378211222 1 21.76130722 -10.06644424 4.641026598 1.000019349 0.449703773 0.633005688 0.124556626 326321415.4 611118597.1 122065.1319 0.030190486 8.58E-11 10.06644424 -0.550315577 SETSWES(ph)PK ddPTM_HeLa_A486_30min_R1 4 SETSWESPK 9 0 E5RJU9;Q86UE4 E5RJU9 MTDH Protein LYRIC 1 0 SETSWES(1)PK;SETSWES(1)PK;SETSWES(1)PK;SETSWES(1)PK ;;; 197.73 8.69E-15 1193960000 2328630 1929820 990090 991160 1752960 2024130 2489760 1954890 1577770 3421970 TRUE FALSE FALSE 2165405.062 1776894.035 1373479.364 2307470.57 1533087.411 1774413.42 1866795.714 1509804.222 1714532.374 2565086.439 0.844184051 0.692722868 0.535451493 0.899568348 0.597674756 0.6917558 0.727771075 0.588597795 0.668411149 1 21.29057601 -9.930130652 5.975833688 1.000000125 0.690351593 0.428416022 0.105953831 1.69E-07 3.04E-08 0.098427153 0.023872082 1.17E-10 9.930130652 -0.309648532 SEVIEDS(ph)DVETVSEKK ddPTM_HeLa_A485_30min_R1 1 SEVIEDSDVETVSEKK 16 1 E5RFE4;Q56NI9 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 SEVIEDS(1)DVETVSEKK 157.79 6.64E-09 113490000 71641 54426 32617 125300 80538 73666 109150 98606 58596 147030 TRUE FALSE FALSE 87577.29329 60790.64726 44683.38561 132144.8217 72519.35393 77523.03785 85829.21083 74422.72389 70355.67973 110378.1269 0.793429783 0.550749039 0.404821017 1.197201162 0.657008376 0.702340582 0.777592565 0.674252463 0.637405994 1 16.75209478 -11.51943182 2.159226294 4.834572036 0.710246125 0.166759942 0.194113908 9415999.194 621665.5103 176921040.6 0.048382544 3.02E-12 11.51943182 -4.124325911 SEVLSES(ph)SELLQQELEELRK ddPTM_HeLa_A485_30min_R1 1 SEVLSESSELLQQELEELRK 20 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 SEVLSES(0.838)S(0.162)ELLQQELEELRK 193.77 7.93E-20 32627000 13807 15030 14288 20914 14279 14698 24063 28097 11278 28686 TRUE FALSE FALSE 16878.31952 16787.62776 19573.72577 22056.47886 12857.33262 15467.56455 18921.74347 21206.1667 13541.39115 21535.10813 0.78375829 0.779546945 0.908921639 1.024210268 0.597040542 0.718248753 0.878646318 0.984725341 0.628805348 1 14.39440295 -10.12327531 4.805907843 1.000011149 0.817736769 0.14980033 0.13396041 1.62E-05 2.96E-06 0.131690876 0.031937776 7.53E-11 10.12327531 -0.18227438 SEVLSES(ph)SELLQQELEELRK ddPTM_HeLa_A486_30min_R1 1 SEVLSESSELLQQELEELRK 20 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 SEVLS(0.129)ES(0.788)S(0.083)ELLQQELEELRK 162.65 1.58E-13 38807000 16285 11867 10251 9302.3 16937 16304 20721 22266 14173 21292 TRUE FALSE FALSE 15143.5056 10926.6157 14220.46173 21656.22451 14812.60353 14292.57825 15536.38664 17196.51786 15401.52705 15960.34461 0.948820716 0.684610262 0.890987136 1.356877 0.928087951 0.895505617 0.973436791 1.077452792 0.964987124 1 13.96220418 -5.008944104 24.99607732 1.027361119 0.809486249 0.297690059 0.13449387 499.6486885 1396380.597 0.035895502 0.069099056 9.80E-06 5.008944104 -0.21787487 SEVLSESS(ph)ELLQQELEELRK ddPTM_HeLa_A485_30min_R1 1 SEVLSESSELLQQELEELRK 20 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 SEVLS(0.024)ES(0.481)S(0.495)ELLQQELEELRK 130.19 1.39E-09 0 14957 13592 11988 20035 21604 15014 26789 29056 13837 27661 TRUE FALSE FALSE 18284.13305 15181.46617 16422.86006 21129.46132 19453.0299 15800.10982 21065.3113 21929.97044 16613.95898 20765.62176 0.880500149 0.731086521 0.790867726 1.017521245 0.936790149 0.760878244 1.014432004 1.056070976 0.800070384 1 14.34190945 -5.240243573 23.90217455 0.938560846 0.79384492 0.30867245 0.095804511 565.5421652 637750.6277 0.026130904 0.045187156 5.75E-06 5.240243573 -0.144715926 SEVLSESS(ph)ELLQQELEELRK ddPTM_HeLa_A486_30min_R1 1 SEVLSESSELLQQELEELRK 20 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 SEVLSES(0.425)S(0.575)ELLQQELEELRK 193.42 8.80E-20 26350000 13554 18159 10001 9157.6 14134 17678 19546 20375 13153 21683 TRUE FALSE FALSE 12603.93459 16720.01471 13873.65504 21319.3556 12361.18193 15497.0681 14655.38406 15736.05728 14293.11263 16253.43567 0.775462791 1.028706487 0.853582917 1.311683021 0.760527323 0.953464142 0.90167915 0.96816806 0.879390236 1 13.98845709 SEVQQPVHPKPLS(ph)PDSR ddPTM_HeLa_A485_30min_R1 9 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SEVQQPVHPKPLS(0.979)PDS(0.021)R;SEVQQPVHPKPLS(0.999)PDS(0.001)R;SEVQQPVHPKPLS(0.998)PDS(0.002)R;SEVQQPVHPKPLS(0.579)PDS(0.421)R;SEVQQPVHPKPLS(0.999)PDS(0.001)R;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(1)PDSR ;;;;;;;; 222.39 2.03E-34 90027190000 6420790 5718130 4380510 8054630 8925130 6330610 10120200 10140360 5817280 11024550 TRUE FALSE FALSE 7849072.584 6386815.562 6001042.937 8494634.041 8036512.719 6662070.951 7957936.596 7653420.811 6984754.737 8276332.577 0.948375686 0.771696341 0.725084798 1.026376594 0.971023415 0.804954476 0.961529339 0.924735774 0.843943217 1 22.98056019 -8.686779544 0.017932745 1.877172694 2.29E-06 0.117348271 0.092499435 1751.978714 11.65068704 640.6188163 577.4515158 2.06E-09 8.686779544 -1.877170401 SEVQQPVHPKPLS(ph)PDSR ddPTM_HeLa_A486_30min_R1 11 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SEVQQPVHPKPLS(0.998)PDS(0.002)R;SEVQQPVHPKPLS(0.963)PDS(0.037)R;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(0.999)PDS(0.001)R;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(0.944)PDS(0.056)R;SEVQQPVHPKPLS(1)PDSR;SEVQQPVHPKPLS(0.999)PDS(0.001)R;SEVQQPVHPKPLS(0.982)PDS(0.018)R ;;;;;;;;;; 215.32 2.33E-27 82170640000 12494250 12394680 7441660 6171640 13024850 14769990 19198370 18218700 10118170 16521480 TRUE FALSE FALSE 11618467.6 11412480.42 10323270.05 14367889.82 11391151.86 12947818.8 14394734.77 14070699.72 10995221.12 12384393.87 0.938153915 0.921521112 0.833570876 1.160160922 0.9197989 1.045494752 1.162328566 1.136163777 0.887828766 1 23.56201992 -5.251007351 24.97406954 1.049963045 0.900125883 0.348217064 0.091804206 789.1370815 1889174.868 0.025043804 0.042810066 5.61E-06 5.251007351 -0.149837162 SEVQQPVHPKPLSPDS(ph)R ddPTM_HeLa_A485_30min_R1 1 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SEVQQPVHPKPLS(0.153)PDS(0.847)R 116.48 4.46E-05 5896900000 83692 77433 54328 85556 117210 69010 124930 138460 100240 140880 TRUE FALSE FALSE 102308.9967 86488.11577 74426.18798 90229.70764 105540.1609 72623.25689 98237.68492 104502.4679 120357.2485 105761.2087 0.967358429 0.817767845 0.703719151 0.853145579 0.997909935 0.686671964 0.928863107 0.988098275 1.138009389 1 16.69045104 -7.241572676 2.595860388 1.061727333 0.838112645 0.457635585 0.099269489 0.259070309 3.401816445 0.062480275 0.02816749 5.73E-08 7.241572676 -0.223614688 SEVS(ph)SPIQR ddPTM_HeLa_A485_30min_R1 2 SEVSSPIQR 9 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;Q9HAU0-3;H0YG48 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(0.001)EVS(0.5)S(0.5)PIQR;S(0.001)EVS(0.5)S(0.5)PIQR ; 92.538 0.0031514 1107770000 1254940 1540990 1365710 1249100 2011060 1538240 1786200 1948380 1431580 1803370 TRUE FALSE FALSE 1534097.074 1721195.376 1870942.961 1317335.17 1810831.805 1618779.868 1404563.778 1470536.75 1718884.975 1353823.048 1.133159224 1.271359192 1.381970092 0.973048267 1.337569048 1.195710082 1.037479588 1.086210456 1.269652617 1 20.36860775 -13.9999996 0.09262881 0.387055924 1.334887965 0.178628972 0.124095103 343.4339974 2.194635142 41.12688604 2.670561843 1.00E-14 13.9999996 0.947832041 SEVSS(ph)PIQR ddPTM_HeLa_A486_30min_R1 2 SEVSSPIQR 9 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;Q9HAU0-3;H0YG48 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 SEVS(0.181)S(0.819)PIQR;SEVS(0.067)S(0.933)PIQR ; 160.81 1.35E-05 1525000000 2352400 2335500 1871610 748880 2632400 2101000 2343500 2428900 1955820 2489100 TRUE FALSE FALSE 2187508.908 2150426.474 2596347.515 1743430.486 2302219.846 1841799.981 1757131.513 1875892.493 2125352.052 1865813.159 1.172415843 1.152541166 1.391536716 0.934407863 1.233896243 0.987129913 0.941751056 1.005402113 1.139102296 1 20.83137309 -5.272331829 24.96740061 1.03721866 1.230202242 0.444836162 0.104428075 670.1517427 1536104.135 0.029365389 0.044038641 5.34E-06 5.272331829 0.192983583 SEWLDPS(ph)QKSPLHVGETR ddPTM_HeLa_A485_30min_R1 1 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 SEWLDPS(0.679)QKS(0.321)PLHVGETR 80.303 0.0014494 765030000 277760 291400 246040 381020 461550 351100 480860 503680 302990 507210 TRUE FALSE FALSE 339546.7537 325476.6952 337060.4346 401834.1578 415596.4614 369483.0531 378120.3327 380151.6903 363797.3138 380771.8815 0.891732741 0.85478133 0.88520306 1.055314684 1.091457856 0.970352778 0.993036385 0.998371226 0.955420638 1 18.53856742 -5.208217266 7.692407963 1.010149063 0.87421789 0.714998125 0.038150569 0.16938466 22.01470797 0.011255513 0.019517537 6.19E-06 5.208217266 -0.135931173 SEWLDPSQKS(ph)PLHVGETR ddPTM_HeLa_A485_30min_R1 2 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 SEWLDPS(0.004)QKS(0.996)PLHVGETR;SEWLDPS(0.001)QKS(0.999)PLHVGETR ; 142.32 3.53E-08 3692900000 1435710 1517000 1084270 1791960 2001150 1628000 2431600 2395600 1334940 2521800 TRUE FALSE FALSE 1755078.736 1694399.954 1485386.593 1889850.237 1801908.48 1713239.563 1912068.796 1808075.344 1602850.213 1893161.67 0.92706226 0.895010701 0.78460631 0.998250845 0.951798522 0.904962101 1.009987063 0.955055964 0.84665258 1 20.85236619 -5.28044678 24.99170306 0.950913534 0.871504833 0.311155709 0.056859759 1004.518052 1320778.979 0.016015108 0.023797962 5.24E-06 5.28044678 -0.079408701 SEWLDPSQKS(ph)PLHVGETR ddPTM_HeLa_A486_30min_R1 5 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 SEWLDPSQKS(1)PLHVGETR;SEWLDPS(0.001)QKS(0.999)PLHVGETR;SEWLDPSQKS(1)PLHVGETR;SEWLDPS(0.002)QKS(0.998)PLHVGETR;SEWLDPSQKS(1)PLHVGETR ;;;; 195.97 3.65E-19 6916640000 5027980 4797476 2827793 2022007 4881988 5234472 6653300 6402780 4133835 6910940 TRUE FALSE FALSE 4675544.567 4417306.53 3922790.181 4707334.483 4269643.542 4588696.065 4988573.969 4945006.766 4492159.146 5180395.641 0.902545846 0.85269675 0.757237565 0.908682427 0.824192559 0.885781006 0.962971617 0.954561603 0.867145959 1 22.30463085 -6.566650764 4.359879878 0.941791627 0.847800997 0.453320062 0.05012667 0.199722661 8.340949869 0.019364253 0.015074077 2.71E-07 6.566650764 -0.09399063 SFAHLLPS(ph)PEPSPEGSYVGQHSQGLGGHYADSYLK ddPTM_HeLa_A485_30min_R1 1 SFAHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLK 35 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 SFAHLLPS(0.998)PEPS(0.002)PEGSYVGQHSQGLGGHYADSYLK 131.35 8.76E-07 247790000 86216 119560 123140 49535 147880 98146 117750 115290 99189 111220 TRUE FALSE FALSE 105394.4518 133541.502 168694.6103 52240.97162 133156.548 103284.7728 92591.75057 87014.94673 119095.3225 83494.90085 1.262286088 1.599397096 2.020418116 0.625678587 1.594786587 1.237018929 1.108950961 1.042158813 1.426378393 1 16.34940047 -5.249619173 24.99227191 1.17032632 1.624570043 0.351418811 0.297422672 877.8627091 1856121.863 0.078675047 0.13492051 5.63E-06 5.249619173 0.454243723 SFAHLLPS(ph)PEPSPEGSYVGQHSQGLGGHYADSYLK ddPTM_HeLa_A486_30min_R1 1 SFAHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLK 35 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 SFAHLLPS(0.993)PEPS(0.007)PEGSYVGQHSQGLGGHYADSYLK 131.57 1.60E-06 170030000 110140 121530 91966 7824 144260 89094 94887 94253 113750 51875 TRUE FALSE FALSE 102419.7548 111899.5202 127577.6981 18214.6674 126165.5656 78102.48812 71145.26899 72793.64943 123609.9416 38885.16235 2.633903231 2.877691989 3.280883772 0.468422048 3.244568314 2.008542164 1.829625098 1.872016086 3.178845969 1 15.24693214 -10.29062675 0.141514481 1.94E-31 2.934964623 0.172565708 0.842053842 68.89414722 1.806115238 38.35730141 6.715994899 5.12E-11 10.29062675 2.934964623 SFDLLVK ddPTM_HeLa_A485_30min_R1 1 SFDLLVK 7 0 Q9HB71-3;Q9HB71 Q9HB71-3 CACYBP Calcyclin-binding protein 0 0 105.95 0.024852 22438000 37559 40357 34481 41888 50380 42919 56355 56621 36983 57160 FALSE FALSE TRUE 45913.86997 45076.40009 47236.95677 44176.23537 45363.99031 45166.17247 44314.29387 42734.61097 44405.14887 42911.06395 1.069977431 1.050461022 1.100810663 1.029483571 1.057163028 1.052553079 1.032700889 0.995887937 1.034818175 1 15.38906205 -6.756626539 0.672773245 1.00378992 1.068556334 0.578727072 0.019295461 0.522770358 0.473437436 0.016368818 0.011065676 1.75E-07 6.756626539 0.064766414 SFDLLVK ddPTM_HeLa_A486_30min_R1 2 SFDLLVK 7 0 Q9HB71-3;Q9HB71 Q9HB71-3 CACYBP Calcyclin-binding protein 0 0 ; ; 117.17 0.01302 38695000 58145 63199 38920 27796 63792 57277 66149 66629 55857 71328 FALSE FALSE TRUE 54069.33576 58190.88107 53990.86631 64710.49273 55790.61252 50210.74609 49597.82055 51459.0312 60698.72973 53467.00453 1.011265475 1.088351247 1.009797852 1.210288351 1.043458728 0.939097796 0.927634173 0.962444626 1.135255851 1 15.70636123 -6.006665003 24.98680851 0.986996251 1.081937803 0.232768789 0.07435365 433.8272608 1626408.657 0.023763575 0.025994646 9.85E-07 6.006665003 0.094941552 SFDRKT(ph)PTFLEIWNDSVDGDSFSSLSSPETGK ddPTM_HeLa_A486_30min_R1 2 SFDRKTPTFLEIWNDSVDGDSFSSLSSPETGK 32 2 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.201)FDRKT(0.765)PT(0.034)FLEIWNDSVDGDSFSSLSSPETGK;S(0.141)FDRKT(0.841)PT(0.018)FLEIWNDSVDGDSFSSLSSPETGK ; 207.6 2.54E-29 154916000 81155 76675 44819 57813 99194 107096 148479 153965 76542 167983 TRUE FALSE FALSE 75466.45358 70598.99375 62174.11709 134591.5857 86752.16357 93883.58439 111327.9837 118910.5305 83176.72219 125918.9634 0.599325563 0.560670068 0.493762936 1.068874632 0.688952333 0.745587335 0.884124049 0.94434172 0.660557552 1 16.94213604 -5.238731966 24.99105602 0.843346609 0.552194542 0.548330802 0.126404019 616.2257459 678197.645 0.033269009 0.057573655 5.77E-06 5.238731966 -0.291152067 SFDRKTPT(ph)FLEIWNDSVDGDSFSSLSSPETGK ddPTM_HeLa_A485_30min_R1 1 SFDRKTPTFLEIWNDSVDGDSFSSLSSPETGK 32 2 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.078)FDRKT(0.355)PT(0.448)FLEIWNDS(0.109)VDGDS(0.007)FS(0.002)S(0.001)LSSPETGK 76.765 0.0010093 48715000 28127 21890 17185 36238 37391 38356 57329 52890 25257 68575 TRUE FALSE FALSE 34383.75411 24449.84508 23542.44663 38217.59018 33668.22075 40364.26085 45080.19082 39918.64457 30325.84823 51480.51453 0.667898416 0.474933969 0.457307912 0.742370012 0.653999306 0.784068715 0.87567483 0.775412696 0.589074303 1 15.65173885 -5.610859488 1.564395429 0.787783772 0.531607379 0.453356433 0.119302817 0.358148804 1.797879242 0.041582933 0.06479989 2.45E-06 5.610859488 -0.256176393 SFDTVIGAGT(ph)PPGLAEPLLVVRPK ddPTM_HeLa_A485_30min_R1 2 SFDTVIGAGTPPGLAEPLLVVRPK 24 1 Q9H6A9-2;Q9H6A9 Q9H6A9-2 PCNXL3 Pecanex-like protein 3 1 0 SFDTVIGAGT(1)PPGLAEPLLVVRPK;SFDTVIGAGT(1)PPGLAEPLLVVRPK ; 169.01 4.39E-14 335050000 604880 590710 354340 649340 409010 637230 713160 706240 465550 1293330 TRUE FALSE FALSE 739433.4692 659788.396 485425.1113 684811.8 368287.5283 670594.3775 560787.54 533033.5327 558981.6147 970926.633 0.761575019 0.679545059 0.499960651 0.705317762 0.379315507 0.690674614 0.577579727 0.548994656 0.575719726 1 19.88900276 -10.29513308 3.656993195 1.001061151 0.598159886 0.554791101 0.106887844 84340098.24 139615539.8 994676.8608 0.025840399 5.07E-11 10.29513308 -0.402901264 SFDTVIGAGT(ph)PPGLAEPLLVVRPK ddPTM_HeLa_A486_30min_R1 2 SFDTVIGAGTPPGLAEPLLVVRPK 24 1 Q9H6A9-2;Q9H6A9 Q9H6A9-2 PCNXL3 Pecanex-like protein 3 1 0 SFDTVIGAGT(1)PPGLAEPLLVVRPK;SFDTVIGAGT(1)PPGLAEPLLVVRPK ; 173.05 2.50E-14 309960000 376180 362860 294060 110924 437840 416530 353700 337890 443000 595390 TRUE FALSE FALSE 349811.7246 334105.6521 407927.9072 258236.6778 382922.0245 365142.7636 265200.5189 260959.8231 481399.5967 446300.4687 0.783803176 0.748611475 0.914020791 0.578616192 0.857991536 0.81815456 0.594219674 0.584717789 1.078644614 1 18.7676558 -7.775340562 24.99945108 1.03932257 0.738400657 0.538887057 0.112561534 208.9481738 375754.5905 0.108133502 0.028501309 1.68E-08 7.775340562 -0.300921913 SFENS(ph)PGDLGNSSLPTAGYKR ddPTM_HeLa_A485_30min_R1 1 SFENSPGDLGNSSLPTAGYKR 21 1 P55197-1;P55197;H0Y5P4 P55197-1 MLLT10 Protein AF-10 1 0 SFENS(1)PGDLGNSSLPTAGYKR 173.21 3.51E-14 134850000 137510 187170 125070 135420 220300 212220 248910 311760 166040 200930 TRUE FALSE FALSE 168098.6251 209057.9033 171338.5976 142817.6517 198366.1585 223331.511 195728.3451 235300.3712 199362.705 150841.8488 1.114403108 1.385941003 1.135882376 0.946803906 1.315060509 1.480567314 1.29757323 1.559914394 1.321667074 1 17.20267721 -5.981262358 24.96030948 1.368460113 1.158298626 0.201858975 0.170640128 329.481816 438898.6172 0.051545923 0.058438991 1.04E-06 5.981262358 -0.210161486 SFEVEEVET(ph)PNS(ph)TPPR ddPTM_HeLa_A486_30min_R1 1 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 S(0.001)FEVEEVET(0.999)PNS(0.542)T(0.458)PPR 71.697 0.010132 0 83045 84342 80291 23088 104110 78918 83766 82892 72482 79325 TRUE FALSE FALSE 77223.97434 77658.43275 111381.8255 53750.0308 91051.55301 69181.89954 62806.86081 64019.30112 78764.79812 59461.50368 1.298722191 1.30602874 1.873175392 0.903946713 1.531268928 1.163473765 1.05626089 1.076651231 1.324635155 1 15.85966833 -6.102986012 1.061856626 1.114235703 1.418936421 0.205472057 0.241779778 0.824056348 1.970477092 0.120932247 0.127720759 7.89E-07 6.102986012 0.304700718 SFFT(ph)PGKPK ddPTM_HeLa_A485_30min_R1 1 SFFTPGKPK 9 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 SFFT(1)PGKPK 110.93 0.0010627 331980000 972150 676780 495010 1410400 1083900 1027100 1662200 1686300 730280 2028700 TRUE FALSE FALSE 1188401.414 755923.5338 678134.7981 1487446.581 975983.1102 1080877.368 1307057.391 1272732.281 876840.4975 1522982.425 0.780311968 0.496344226 0.445267645 0.976666937 0.640836752 0.709710992 0.858222242 0.835684155 0.575739078 1 20.53846786 -13.99999872 0.064582342 2.002195511 0.306589347 0.24588069 0.158152949 497.7176443 2.328231081 77.45750368 11.27251806 1.00E-14 13.99999872 -1.695606164 SFFT(ph)PGKPK ddPTM_HeLa_A486_30min_R1 1 SFFTPGKPK 9 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 SFFT(1)PGKPK 108.35 0.0012093 475700000 618150 582920 237860 353510 503330 786610 966290 946020 389840 1090400 TRUE FALSE FALSE 574820.8771 536727.2962 329965.7621 822989.1454 440197.658 689566.0559 724514.0216 730631.8975 423631.6451 817356.7427 0.703268043 0.656662224 0.403698587 1.006890997 0.53856246 0.843653719 0.886411017 0.893895969 0.518294672 1 19.64060637 -5.258948054 24.99526664 0.801068733 0.594754893 0.258716799 0.173387148 326.8849236 3279591.602 0.046181249 0.075470325 5.51E-06 5.258948054 -0.20631384 SFGS(ph)PNR ddPTM_HeLa_A485_30min_R1 8 SFGSPNR 7 0 D6REC6;D6R9G1;D6RAD4;P50613 D6REC6 CDK7 Cyclin-dependent kinase 7 1 0 SFGS(1)PNR;S(0.024)FGS(0.976)PNR;S(0.02)FGS(0.98)PNR;S(0.007)FGS(0.993)PNR;S(0.001)FGS(0.999)PNR;S(0.001)FGS(0.999)PNR;S(0.036)FGS(0.964)PNR;S(0.008)FGS(0.992)PNR ;;;;;;; 118.33 0.0022303 17105870000 11292860 15172000 14691350 12099180 18507780 14136560 17084990 17572320 13449950 15931480 TRUE FALSE FALSE 13804917.75 16946233.42 20126291.72 12760127.57 16665080.44 14876728.42 13434642.31 13262680.97 16149231.59 11960055.23 1.154252006 1.416902605 1.68279254 1.066895371 1.39339494 1.24386787 1.123292665 1.108914692 1.350263964 1 23.51172072 -6.203508749 1.028620291 1.14977638 1.38015495 0.211733692 0.174616201 0.831729169 1.861480171 0.095639957 0.091806334 6.26E-07 6.203508749 0.23037857 SFGS(ph)PNR ddPTM_HeLa_A486_30min_R1 8 SFGSPNR 7 0 D6REC6;D6R9G1;D6RAD4;P50613 D6REC6 CDK7 Cyclin-dependent kinase 7 1 0 S(0.004)FGS(0.996)PNR;SFGS(1)PNR;SFGS(1)PNR;S(0.001)FGS(0.999)PNR;S(0.019)FGS(0.981)PNR;SFGS(1)PNR;S(0.002)FGS(0.998)PNR;S(0.002)FGS(0.998)PNR ;;;;;;; 102.62 0.0039581 23254970000 16199730 17834380 14925770 5562590 19780200 16187910 18483230 18909490 14871340 17012690 TRUE FALSE FALSE 15064212.58 16421118.78 20705427.87 12949990.64 17299182.87 14190810.25 13858530.36 14604211.92 16160399.73 12752601.69 1.181265827 1.28766813 1.62362382 1.015478328 1.356521853 1.112777659 1.086721807 1.145194704 1.267223749 1 23.60428827 -5.287666361 24.99666983 1.152207108 1.356534293 0.331482739 0.144750048 899.6201125 857416.739 0.040220538 0.059678513 5.16E-06 5.287666361 0.204327185 SFGTRPLS(ph)SGFSPEEAQQQDEEFEK ddPTM_HeLa_A485_30min_R1 1 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 SFGTRPLS(0.742)S(0.249)GFS(0.009)PEEAQQQDEEFEK 285.93 4.34E-76 2104600000 504400 510780 367760 673640 658710 580380 862450 820640 495770 902720 TRUE FALSE FALSE 616602.0398 570511.2778 503809.7278 710439.2475 593126.5195 610767.7994 678180.5119 619376.7533 595266.4915 677688.5173 0.909860539 0.841848819 0.743423734 1.048327114 0.875219964 0.90125151 1.000725989 0.913954918 0.878377715 1 19.3702628 -5.254959065 24.99976329 0.9393635 0.832724818 0.383331318 0.065768421 583.2440726 2250033.239 0.017790965 0.02986142 5.56E-06 5.254959065 -0.106638683 SFGTRPLS(ph)SGFSPEEAQQQDEEFEK ddPTM_HeLa_A486_30min_R1 4 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 SFGTRPLS(0.976)S(0.023)GFS(0.001)PEEAQQQDEEFEK;S(0.001)FGT(0.015)RPLS(0.482)S(0.482)GFS(0.019)PEEAQQQDEEFEK;S(0.003)FGT(0.018)RPLS(0.719)S(0.113)GFS(0.147)PEEAQQQDEEFEK;S(0.013)FGT(0.013)RPLS(0.325)S(0.325)GFS(0.325)PEEAQQQDEEFEK ;;; 247.68 8.57E-50 6354770000 351436 379827 224846 147363 355182 361719 448312 398035 263798 406626 TRUE FALSE FALSE 326802.1512 349728.1252 311912.3928 343068.5113 310631.7616 317093.7875 336139.5958 307411.1195 286664.223 304804.2029 1.072170751 1.147386164 1.023320511 1.125537339 1.019119023 1.040319603 1.10280499 1.008552758 0.940486451 1 18.21752327 -7.458919915 4.486985553 0.970514341 1.074554729 0.521139398 0.041749237 0.163868749 6.492907836 0.025055463 0.010823066 3.48E-08 7.458919915 0.104040388 SFGTRPLSS(ph)GFSPEEAQQQDEEFEK ddPTM_HeLa_A485_30min_R1 4 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 SFGTRPLS(0.314)S(0.647)GFS(0.04)PEEAQQQDEEFEK;S(0.001)FGT(0.001)RPLS(0.362)S(0.503)GFS(0.133)PEEAQQQDEEFEK;SFGTRPLS(0.279)S(0.51)GFS(0.211)PEEAQQQDEEFEK;SFGTRPLS(0.289)S(0.463)GFS(0.248)PEEAQQQDEEFEK ;;; 318.48 7.40E-106 4265630000 445778 423075 332117.1 482441 517762 499058 660970 687443 384920 810313 TRUE FALSE FALSE 544939.7782 472549.941 454981.0358 508795.5302 466211.7973 525187.9052 519748.3599 518846.5264 462169.9133 608316.8818 0.895815642 0.776815431 0.747934258 0.836398833 0.766396283 0.863345932 0.854403972 0.852921466 0.759751911 1 19.21446352 -6.282383877 23.74692049 0.856162214 0.801734991 0.165427232 0.066982487 880.7988934 998647.5039 0.022618434 0.019972741 5.22E-07 6.282383877 -0.054427223 SFGTRPLSSGFS(ph)PEEAQQQDEEFEK ddPTM_HeLa_A486_30min_R1 1 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 SFGTRPLS(0.032)S(0.059)GFS(0.908)PEEAQQQDEEFEK 283.98 6.73E-76 257940000 146480 147240 93182 73593 151190 130150 198380 186910 109330 185780 TRUE FALSE FALSE 136212.5084 135572.1662 129264.5659 171328.2232 132226.3404 114093.4163 148743.2258 144354.6732 118806.8124 139259.4788 0.978120194 0.973521999 0.928228132 1.230280514 0.94949616 0.819286538 1.068101267 1.036587775 0.853132681 1 17.087416 SFHFDPLS(ph)SGSR ddPTM_HeLa_A485_30min_R1 1 SFHFDPLSSGSR 12 0 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 SFHFDPLS(0.377)S(0.312)GS(0.312)R 63.682 0.016121 48003000 79899 97904 74054 35919 102890 71098 81996 84465 79492 75347 TRUE FALSE FALSE 97672.2569 109353.0211 101449.6562 37881.16402 92645.91033 74820.58134 64476.88475 63749.82631 95445.31526 56564.37956 1.726744953 1.93324884 1.793525484 0.669699983 1.63788432 1.322750854 1.139884946 1.127031302 1.687374917 1 15.78760621 -5.044090435 24.61836136 1.247871189 1.838344699 0.479635934 0.281838147 297.6191674 166178.471 0.073066071 0.126564974 9.03E-06 5.044090435 0.59047351 SFHFDPLSS(ph)GSR ddPTM_HeLa_A486_30min_R1 1 SFHFDPLSSGSR 12 0 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 SFHFDPLS(0.062)S(0.469)GS(0.469)R 67.646 0.010022 52352000 87105 83653 89585 10389 122700 65924 67369 66191 88735 38856 TRUE FALSE FALSE 80999.38931 77024.03162 124274.7112 24186.11703 107309.8219 57790.96715 50512.56364 51120.75424 96426.62125 29126.20469 2.780979883 2.644492561 4.266766388 0.830390272 3.68430501 1.984157145 1.734265215 1.755146432 3.310648341 1 14.8300301 -8.342443045 0.121265171 2.39E-11 3.84638782 0.197805438 0.965649092 23.17024118 1.472862805 26.49360672 16.46181189 4.55E-09 8.342443045 3.84638782 SFHFDPLSSGS(ph)R ddPTM_HeLa_A485_30min_R1 2 SFHFDPLSSGSR 12 0 Q9C0B5;Q9C0B5-2;H0YEF4 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 0 SFHFDPLS(0.017)S(0.106)GS(0.877)R;SFHFDPLS(0.003)S(0.128)GS(0.869)R ; 113.59 0.00023731 244880000 302260 412350 284640 123602 318720 313980 372310 382810 378720 398180 TRUE FALSE FALSE 369496.6942 460570.7455 389940.1809 130354.0643 286987.1177 330419.5073 292762.927 288925.2473 454725.6302 298921.054 1.236101269 1.540777203 1.304492192 0.43608191 0.960076629 1.10537382 0.979398818 0.966560379 1.52122316 1 18.18940499 -5.021474842 24.95057242 0.986851062 1.396988227 0.303551814 0.255120508 825.682064 959321.3164 0.069693817 0.122284412 9.52E-06 5.021474842 0.410137166 SFKLS(ph)GFS(ph)FKK ddPTM_HeLa_A485_30min_R1 1 SFKLSGFSFKK 11 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 S(0.004)FKLS(0.996)GFS(1)FKK 79.652 0.0047689 423450000 376880 186970 105130 692970 398320 303960 775360 693860 262720 1065800 TRUE FALSE FALSE 460715.6558 208834.5151 144021.9618 730825.1964 358661.8622 319874.8756 609698.0019 523689.7471 315445.4942 800115.6746 0.575811311 0.261005404 0.180001425 0.913399424 0.448262512 0.399785788 0.762012321 0.654517545 0.394249862 1 19.60984906 -14 0.122421405 2.564062463 0.286895922 0.334347951 0.210852059 179.4125494 1.412659944 69.64519517 1.957763779 1.00E-14 14 -2.277166541 SFKLS(ph)GFS(ph)FKK ddPTM_HeLa_A486_30min_R1 1 SFKLSGFSFKK 11 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 S(0.031)FKLS(0.969)GFS(1)FKK 84.508 0.0027556 354600000 440310 315660 101620 337000 224940 572940 841970 880680 259930 958720 TRUE FALSE FALSE 409446.5428 290645.952 140969.9855 784553.031 196725.9277 502256.488 631300.2005 680168.3891 282460.9417 718650.2718 0.569743808 0.404433093 0.196159371 1.09170352 0.273743621 0.698888608 0.878452601 0.946452559 0.393043672 1 19.45493033 -5.080106774 0.157186739 1.062877485 1.69E-11 0.206138453 0.273194343 25.8867517 0.975104794 1.35512269 6.029325845 8.32E-06 5.080106774 -1.062877485 SFKLS(ph)GFSFK ddPTM_HeLa_A485_30min_R1 2 SFKLSGFSFK 10 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 SFKLS(0.981)GFS(0.019)FK;SFKLS(0.822)GFS(0.178)FK ; 139.21 1.04E-05 8971600000 1680700 915460 760760 2234800 1715000 1313100 1911700 1536700 1047600 2936300 TRUE FALSE FALSE 2054565.917 1022515.084 1042196.782 2356881.465 1544248.578 1381851.886 1503249.678 1159821.916 1257843.711 2204334.449 0.932057256 0.463865673 0.472794309 1.069203209 0.700550944 0.626879413 0.681951724 0.526155147 0.570622898 1 21.0719117 -4.220811349 22.40314384 0.669175168 0.932060225 0.128853855 0.195777639 13077.15931 7210445.284 0.048775519 12.89721018 6.01E-05 4.220811349 0.262885056 SFKLS(ph)GFSFK ddPTM_HeLa_A486_30min_R1 3 SFKLSGFSFK 10 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 SFKLS(1)GFSFK;SFKLS(0.994)GFS(0.006)FK;SFKLS(0.893)GFS(0.107)FK ;; 153.14 1.37E-06 8963740000 5178930 5052050 2428500 2375370 4629370 5943760 7337030 6259480 4201330 6863970 TRUE FALSE FALSE 4815913.751 4651707.159 3368880.237 5529981.405 4048711.247 5210479.323 5501227.491 4834333.047 4565504.667 5145187.235 0.936003595 0.904088995 0.65476339 1.074787204 0.786892889 1.012689934 1.069198698 0.939583503 0.887334991 1 22.29479215 -6.281161795 24.5879587 0.98345023 0.872402649 0.202106965 0.109695703 1129.984557 1408748.186 0.038220065 0.033755439 5.23E-07 6.281161795 -0.111047581 SFKLS(ph)GFSFKK ddPTM_HeLa_A485_30min_R1 2 SFKLSGFSFKK 11 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 SFKLS(0.998)GFS(0.001)FKK;S(0.107)FKLS(0.889)GFS(0.004)FKK ; 100.43 0.00094497 7268100000 10863300 9251600 4460990 9962900 12945500 13748400 20294600 26067100 7586620 14698800 TRUE FALSE FALSE 13279803.61 10333494.14 6111295.838 10507148 11656600.57 14468244.96 15958492.92 19674102.85 9109185.045 11034659.67 1.203462907 0.936457893 0.553827306 0.952195021 1.05636249 1.311163678 1.446215234 1.782936986 0.82550666 1 23.3955388 -6.077579423 2.460699311 1.335477417 0.889039144 0.254120541 0.283196763 0.348493401 4.162365466 0.101846825 0.105784128 8.36E-07 6.077579423 -0.446438274 SFLDS(ph)GYRILGAVAK ddPTM_HeLa_A485_30min_R1 1 SFLDSGYRILGAVAK 15 1 P18206;P18206-2 P18206 VCL Vinculin 1 0 SFLDS(0.668)GY(0.332)RILGAVAK 95.183 0.00043209 30509000 5609.3 18446 8744.2 9945 13436 14520 21646 57320 7337.2 12428 TRUE FALSE FALSE 6857.069433 20603.09924 11979.04346 10488.27017 12098.26466 15280.24475 17021.15527 43262.18013 8809.708739 9329.92832 0.734954139 2.20828055 1.283937351 1.124153349 1.296715714 1.637766575 1.824360776 4.636925241 0.944241846 1 13.18765028 -7.009912656 24.49289449 2.520478581 1.426359656 0.087872868 1.026561196 585.6951944 1447174.325 0.424701471 0.267324828 9.77E-08 7.009912656 -1.094118924 SFLDSGY(ph)R ddPTM_HeLa_A485_30min_R1 4 SFLDSGYR 8 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 SFLDSGY(1)R;SFLDSGY(1)R;SFLDSGY(1)R;SFLDSGY(1)R ;;; 209.9 5.99E-07 1289720000 1448990 1918020 1879090 1529850 2404690 1786300 2182650 2311360 1769600 2010880 TRUE FALSE FALSE 1771312.827 2142315.754 2574243.586 1613421.832 2165270.62 1879827.906 1716308.997 1744495.336 2124742.488 1509604.624 1.173362084 1.419123737 1.705243576 1.068771125 1.434329616 1.245245196 1.136926166 1.155597505 1.407482764 1 20.52573932 -6.145336412 1.109561795 1.184867204 1.392384864 0.170637421 0.18474053 0.901449791 2.328484861 0.093113663 0.093810534 7.16E-07 6.145336412 0.20751766 SFLDSGY(ph)R ddPTM_HeLa_A486_30min_R1 5 SFLDSGYR 8 0 P18206;P18206-2 P18206 VCL Vinculin 1 0 SFLDSGY(1)R;SFLDSGY(1)R;SFLDSGY(1)R;SFLDSGY(1)R;SFLDSGY(1)R ;;;; 224.8 6.43E-09 1691440000 1583200 1844930 1577460 626418 2080050 1717680 1891340 1876700 1479660 1740130 TRUE FALSE FALSE 1472225.856 1698731.028 2188294.758 1458332.761 1819150.733 1505770.106 1418106.727 1449416.378 1607918.12 1304390.122 1.12866989 1.302318225 1.677638248 1.118018864 1.394637006 1.154386315 1.087179904 1.111183191 1.232697253 1 20.31494399 -6.368870149 5.070594641 1.117842158 1.330777046 0.310537702 0.154851506 0.298409585 11.59074275 0.055738035 0.048869323 4.28E-07 6.368870149 0.212934888 SFLFQLLK ddPTM_HeLa_A486_30min_R1 2 SFLFQLLK 8 0 Q00535 Q00535 CDK5 Cyclin-dependent-like kinase 5 0 0 ; ; 124.08 0.0042251 10014900 16183.9 20765.8 14241.1 8264.8 18730.4 20026.2 20764.2 20167.5 20653.7 23041 FALSE FALSE TRUE 15049.49218 19120.24238 19755.63531 19240.87208 16381.05858 17555.57106 15568.77754 15575.8005 22443.97935 17271.38363 0.871354172 1.107047518 1.143836286 1.114031886 0.948450856 1.016454236 0.9014204 0.901827024 1.299489365 1 14.07609604 -5.757715563 24.99888557 1.001131367 1.068549521 0.027397704 0.126466315 313.916613 2107385.796 0.037963531 0.047108615 1.75E-06 5.757715563 0.067418155 SFLLDLLNATGK ddPTM_HeLa_A485_30min_R1 2 SFLLDLLNATGK 12 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A2R8YDH3;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 0 0 ; ; 215.08 2.72E-20 14785400 25897 19800.4 19841.3 32102.4 30692.9 27088.5 44018.6 33678.7 19312.8 42529.5 FALSE FALSE TRUE 31657.69831 22115.88454 27181.42254 33856.07282 27637.00711 28506.81197 34613.66651 25418.94602 23188.70181 31927.67835 0.991544013 0.6926869 0.851343535 1.060398832 0.865612802 0.892855774 1.084127262 0.796141384 0.726288381 1 14.96252003 -3.929908817 21.31435529 0.886561023 4.265571376 0.06113347 0.124615141 2461.687382 731032.8489 0.030622884 9275.857293 0.000117514 3.929908817 3.379010352 SFLLDLLNATGK ddPTM_HeLa_A486_30min_R1 2 SFLLDLLNATGK 12 0 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A2R8YDH3;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 0 0 ; ; 179.19 8.21E-09 20830700 32573.6 37792 30688.2 17667.8 47369 55127 64455 57898 49562 57364 FALSE FALSE TRUE 30290.35885 34797.22428 42571.4929 41131.53128 41427.53832 48325.99123 48327.67726 44715.8893 53858.07407 42999.68102 0.704432176 0.809243777 0.990042063 0.956554335 0.963438271 1.123868598 1.123907808 1.039912117 1.252522642 1 15.39203834 -3.796729342 0.470866228 1.118602605 0.187937502 0.754016972 0.074063431 3.355789248 0.415954668 0.046914072 1.899935743 0.000159687 3.796729342 -0.930665103 SFLQS(ph)LECLR ddPTM_HeLa_A485_30min_R1 1 SFLQSLECLR 10 0 A0A087WW59;Q7Z7L8 A0A087WW59 C11orf96 Uncharacterized protein C11orf96 1 0 SFLQS(1)LECLR 59.227 0.031518 7937500 20183 21001 17464 24584 20683 22382 25198 28344 21542 31118 TRUE FALSE FALSE 24672.63872 23456.88427 23924.66034 25926.96167 18623.7279 23553.88691 19814.24145 21392.58956 25865.28181 23360.85528 1.056153057 1.004110679 1.024134607 1.109846423 0.797219437 1.008263038 0.848181336 0.915745134 1.107206114 1 14.51180547 -5.72837978 24.9999997 0.940101429 1.043641359 0.256564379 0.084910872 266.4131759 201463.1717 0.024453155 0.031566692 1.87E-06 5.72837978 0.10353993 SFLS(ph)LK ddPTM_HeLa_A486_30min_R1 1 SFLSLK 6 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 SFLS(1)LK 82.452 0.019789 124520000 160190 176740 103710 90505 171100 209330 267090 241970 208540 337110 TRUE FALSE FALSE 148961.5082 162734.4787 143869.2895 210700.2139 149639.0426 183504.9929 200261.257 186878.7132 226616.4151 252695.4618 0.589490239 0.643994465 0.569338636 0.833810835 0.592171468 0.726190299 0.79250041 0.739541232 0.896796537 1 17.94704023 -7.652575647 0.236552099 1.07889365 0.541789778 0.718813861 0.0724659 1.221407353 0.294189687 0.259742598 0.215792362 2.23E-08 7.652575647 -0.537103872 SFLSEPSS(ph)PGR ddPTM_HeLa_A485_30min_R1 7 SFLSEPSSPGR 11 0 Q69YN4-3;Q69YN4;H0YC41 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 SFLSEPS(0.005)S(0.995)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPS(0.001)S(0.999)PGR;SFLSEPSS(1)PGR ;;;;;; 244.71 5.42E-22 15134100000 8179140 11304270 11307130 8629370 13164470 10264850 12774400 13943830 10057720 11621000 TRUE FALSE FALSE 9998561.475 12626206.04 15490107.92 9100770.632 11853769.14 10802301.67 10045045.08 10524083.83 12076212.15 8724098.569 1.14608534 1.447279159 1.775553978 1.043176044 1.358738562 1.238214079 1.151413525 1.206323352 1.384236097 1 23.05657464 -5.286686686 24.99039888 1.212541451 1.455403616 0.298221515 0.180938028 965.401519 955575.8816 0.050494288 0.074926155 5.17E-06 5.286686686 0.242862166 SFLSEPSS(ph)PGR ddPTM_HeLa_A486_30min_R1 6 SFLSEPSSPGR 11 0 Q69YN4-3;Q69YN4;H0YC41 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR;SFLSEPS(0.007)S(0.993)PGR;SFLSEPSS(1)PGR;SFLSEPSS(1)PGR ;;;;; 238.2 9.97E-22 11442740000 9186700 10085800 8788500 2909380 11246900 8868900 10288400 10421700 8567500 9777300 TRUE FALSE FALSE 8542759.77 9286564.476 12191642.56 6773183.672 9836208.929 7774745.29 7714133.5 8048906.414 9310137.798 7329000.44 1.165610487 1.267098365 1.663479579 0.924161995 1.342094193 1.060819324 1.052549193 1.098227034 1.270314809 1 22.80518502 -5.279756633 24.9995211 1.116591239 1.355566433 0.339347963 0.164734526 958.6920929 1308427.498 0.045568095 0.067741641 5.25E-06 5.279756633 0.238975194 SFLVASVLPGPDGNINS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 SFLVASVLPGPDGNINSPTR 20 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 SFLVASVLPGPDGNINS(0.971)PT(0.029)R;SFLVASVLPGPDGNINS(0.996)PT(0.004)R ; 252.75 2.36E-47 122180000 326440 347580 304350 124983 354240 300200 353730 328800 280230 356410 TRUE FALSE FALSE 303558.2417 320036.4949 422202.4708 290966.7403 309807.916 263164.3762 265223.0126 253939.4177 304520.562 267162.6162 1.136230233 1.197908972 1.580320169 1.089099757 1.159623006 0.985034433 0.992739989 0.950505057 1.139832236 1 18.02735862 -5.734150778 2.087090094 1.016807834 1.290426955 0.443728129 0.128878155 0.287477093 2.573935354 0.043818944 0.057741354 1.84E-06 5.734150778 0.273619121 SFLVIVDGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SFLVIVDGSPK 11 0 Q9H116-4;Q9H116 Q9H116-4 GZF1 GDNF-inducible zinc finger protein 1 1 0 SFLVIVDGS(1)PK;SFLVIVDGS(1)PK ; 142.91 1.08E-06 107797000 182824 155685 92147 146674 149155 177976 249491 206257 132050 314678 TRUE FALSE FALSE 170008.9817 143347.9536 127828.7862 341464.4845 130446.5891 156019.1306 187065.713 159296.7837 143496.2003 235880.5806 0.720741747 0.607714095 0.541921619 1.447615923 0.55301962 0.661432706 0.793052622 0.675328097 0.608342577 1 17.84769712 SFMDQPLAEHFS(ph)PFR ddPTM_HeLa_A485_30min_R1 4 SFMDQPLAEHFSPFR 15 0 A0A0A0MTL5;Q13309-2;Q13309 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 1 0 SFMDQPLAEHFS(1)PFR;SFMDQPLAEHFS(1)PFR;SFMDQPLAEHFS(1)PFR;SFMDQPLAEHFS(1)PFR ;;; 164.98 4.08E-12 214091000 187929 237375 227635 190486 296438 220119 268361 307677 237951 244904 TRUE FALSE FALSE 229733.1577 265133.9414 311846.6592 200891.7678 266923.5919 231644.0905 211023.48 232218.7333 285705.5831 183853.9399 1.249541662 1.442090071 1.696165224 1.092670453 1.45182416 1.259935417 1.147777851 1.263060957 1.553981292 1 17.48820057 -5.272706472 24.99679116 1.267931209 1.46054811 0.21432151 0.182496332 1180.457738 2618921.419 0.050421914 0.075551637 5.34E-06 5.272706472 0.192616901 SFMDQPLAEHFS(ph)PFR ddPTM_HeLa_A486_30min_R1 2 SFMDQPLAEHFSPFR 15 0 A0A0A0MTL5;Q13309-2;Q13309 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 1 0 SFMDQPLAEHFS(1)PFR;SFMDQPLAEHFS(1)PFR ; 181.29 6.94E-18 129544000 140002 174827 159389 57893 191387 154162 164884 185310 131325 153176 TRUE FALSE FALSE 130188.5828 160973.0718 221108.6894 134777.8298 167381.4578 135143.0598 123628.2792 143118.9583 142708.3567 114819.7326 1.133851994 1.401963479 1.925702877 1.173821143 1.457776064 1.177002043 1.076716314 1.24646657 1.242890516 1 16.80901108 -6.282779135 7.134592336 1.158762459 1.432435571 0.287581139 0.211644072 0.262406397 62.39115481 0.075366505 0.068135297 5.21E-07 6.282779135 0.273673112 SFNFYVFPKPFNR ddPTM_HeLa_A485_30min_R1 2 SFNFYVFPKPFNR 13 1 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C002;A0A494C156;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C1N1;A0A494C0Q2 A0A494C0Q6;A0A494C0Q2 PARN Poly(A)-specific ribonuclease PARN 0 0 ; ; 155.02 5.49E-06 41064000 52841 62008 61549 51981 82310 52359 74199 65690 46264 71928 FALSE FALSE TRUE 64595.29815 69259.2962 84318.53637 54820.59041 74114.92739 55100.43628 58345.7775 49579.4245 55548.76044 53997.67334 1.196260768 1.282634823 1.561521657 1.015239862 1.372557794 1.020422416 1.080523917 0.918177052 1.028725073 1 15.72060963 -6.350926894 1.269170727 0.981443185 1.303596564 0.480874179 0.138457498 0.376619555 1.235304215 0.068681931 0.057266084 4.46E-07 6.350926894 0.322153379 SFNFYVFPKPFNR ddPTM_HeLa_A486_30min_R1 1 SFNFYVFPKPFNR 13 1 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C002;A0A494C156;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C1N1;A0A494C0Q2 A0A494C0Q6;A0A494C0Q2 PARN Poly(A)-specific ribonuclease PARN 0 0 119.69 0.00025955 22222000 45463 38548 30836 14893 41227 32443 41128 38942 29832 41416 FALSE FALSE TRUE 42276.27847 35493.31609 42776.52502 34671.65665 36055.92523 28440.51252 30837.33939 30075.7567 32417.86178 31045.16403 1.361766955 1.143280031 1.377880464 1.116813447 1.161402311 0.916101216 0.993305732 0.968774289 1.044216154 1 14.92208093 -5.806425197 1.572728729 0.984757113 1.276172637 0.721423791 0.079434317 0.191238784 0.981900946 0.027659632 0.036094481 1.56E-06 5.806425197 0.291415524 SFPIKPVPS(ph)PSWSGSCR ddPTM_HeLa_A485_30min_R1 2 SFPIKPVPSPSWSGSCR 17 1 Q9P0U3-2;Q9P0U3 Q9P0U3-2 SENP1 Sentrin-specific protease 1 1 0 SFPIKPVPS(0.894)PS(0.103)WS(0.001)GS(0.002)CR;SFPIKPVPS(0.987)PS(0.013)WSGSCR ; 212.06 5.45E-26 1503410000 1180310 1280890 1154930 1332450 1442950 1248000 1448010 1214780 1168230 1717720 TRUE FALSE FALSE 1442865.887 1430678.943 1582186.668 1405238.37 1299284.831 1313343.35 1138630.834 916853.3003 1402683.045 1289524.016 1.118913544 1.109462814 1.226954014 1.089734159 1.007569316 1.018471416 0.882985365 0.711001337 1.087752556 1 20.29840721 -6.065737058 1.37060009 0.905027931 1.147276024 0.471051528 0.098815323 0.339824397 1.307879047 0.042511034 0.045224366 8.60E-07 6.065737058 0.242248093 SFPIKPVPS(ph)PSWSGSCR ddPTM_HeLa_A486_30min_R1 2 SFPIKPVPSPSWSGSCR 17 1 Q9P0U3-2;Q9P0U3 Q9P0U3-2 SENP1 Sentrin-specific protease 1 1 0 SFPIKPVPS(0.988)PS(0.012)WSGSCR;SFPIKPVPS(0.791)PS(0.207)WS(0.002)GSCR ; 190.63 2.80E-18 2701400000 3325500 3297600 2121140 1055880 3334200 3253600 3436200 3415600 2785000 3807900 TRUE FALSE FALSE 3092399.623 3036286.166 2942502.214 2458142.001 2915993.546 2852203.912 2576426.416 2637942.442 3026406.042 2854377.055 1.083388622 1.063729882 1.030873692 0.861183352 1.021586668 0.999238663 0.902623012 0.924174484 1.060268487 1 21.44474449 -5.012501315 21.73301456 0.963342445 1.066995088 0.376477553 0.055996634 103.6548731 180206.2939 0.014885369 0.027640992 9.72E-06 5.012501315 0.103652644 SFPKDDPSKPVHLTAFLGYK ddPTM_HeLa_A485_30min_R1 2 SFPKDDPSKPVHLTAFLGYK 20 2 H7C422;P39023;H7C3M2;F8WCR1 H7C422 RPL3 60S ribosomal protein L3 0 0 ; ; 112.56 8.23E-06 28743000 60147 73301 48816 30508.2 96080 73311 107413 118453 62737 70874 FALSE FALSE TRUE 73526.49265 81872.91432 66875.0698 32174.78572 86513.93784 77149.4506 84463.33507 89402.21602 75327.74044 53206.41614 1.381910265 1.538778972 1.256898597 0.604716274 1.626005736 1.450002767 1.587465219 1.680290132 1.415764224 1 15.69931261 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(ph)R ddPTM_HeLa_A485_30min_R1 4 SFREPAPAEALPQQYPEPAPAALCGPPPRAPSR 33 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R ;;; 219.4 2.43E-39 4016310000 490742 707900 769680 403945 843470 787120 895280 1051200 646503 619030 TRUE FALSE FALSE 599905.8649 790682.7471 1054416.661 426011.4925 759491.1652 828332.3861 703996.1142 793391.5518 776250.222 464717.2134 1.290905195 1.701427716 2.268942554 0.916711239 1.634308227 1.782443951 1.514891409 1.707256647 1.670371141 1 18.82599356 -10.18172881 4.582554224 0.999890409 1.617286941 0.23655883 0.328333665 0.000361247 6.45E-05 0.311720575 0.07559 6.58E-11 10.18172881 0.617396532 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(ph)R ddPTM_HeLa_A486_30min_R1 3 SFREPAPAEALPQQYPEPAPAALCGPPPRAPSR 33 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R;SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R ;; 203.34 1.58E-29 2001350000 354290 445590 391530 143569 595430 340339 464430 479400 361150 458060 TRUE FALSE FALSE 329456.1006 410279.8256 543140.9015 334235.8876 520745.6172 298351.4345 348224.7018 370251.0852 392454.7728 343358.7945 0.959509719 1.194901171 1.581846483 0.973430397 1.516622337 0.868920323 1.014171494 1.078321252 1.142987391 1 18.38935739 -6.281326048 24.99867383 1.025355898 1.246061614 0.245318358 0.196696318 1252.378904 1574306.383 0.067824996 0.059891816 5.23E-07 6.281326048 0.220705716 SFS(ph)ADNFIGIQR ddPTM_HeLa_A485_30min_R1 5 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7-2;Q8N7R7 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 0 SFS(1)ADNFIGIQR;S(0.021)FS(0.979)ADNFIGIQR;SFS(1)ADNFIGIQR;S(0.002)FS(0.998)ADNFIGIQR;S(0.001)FS(0.999)ADNFIGIQR ;;;; 257.22 2.67E-33 1575930000 942090 1111001 710532 974427 735474 982870 1235648 1139212 868727 2001030 TRUE FALSE FALSE 1151654.67 1240922.903 973387.3545 1027657.48 662247.6262 1034331.553 971641.7105 859818.4708 1043072.54 1502210.047 0.766640239 0.82606484 0.647970206 0.684097062 0.440848886 0.688539898 0.646808156 0.572369006 0.69435865 1 20.51865512 -8.040527186 22.49735202 1.000000002 0.656908484 0.517081223 0.09818619 1889.760982 1049038.833 0.100953166 0.026065995 9.11E-09 8.040527186 -0.343091518 SFS(ph)ADNFIGIQR ddPTM_HeLa_A486_30min_R1 5 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7-2;Q8N7R7 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 0 SFS(1)ADNFIGIQR;S(0.001)FS(0.999)ADNFIGIQR;SFS(1)ADNFIGIQR;SFS(1)ADNFIGIQR;S(0.001)FS(0.999)ADNFIGIQR ;;;; 270.91 8.74E-36 1533857000 1064000 1083239 1070638 329805 1583770 1221282 1114336 1030244 1447569 1616200 TRUE FALSE FALSE 989419.0945 997399.1966 1485217.706 767802.7074 1385118.799 1070612.644 835517.3466 795679.9313 1573045.446 1211493 0.816694025 0.823281023 1.225939981 0.633765698 1.14331556 0.883713438 0.689659244 0.656776334 1.29843544 1 20.20835464 -7.769117948 24.9994059 1.149217667 0.867303691 0.258564147 0.196092465 268.5549508 874308.5462 0.17386037 0.048291546 1.70E-08 7.769117948 -0.281913976 SFS(ph)ASQSTDR ddPTM_HeLa_A486_30min_R1 1 SFSASQSTDR 10 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.001)FS(0.997)AS(0.002)QSTDR 134.49 0.00011003 0 152520 168580 143760 36136 182440 128650 157940 148680 142190 136810 TRUE FALSE FALSE 141829.1356 155221.1068 199427.722 84126.43421 159556.674 112778.471 118421.7415 114828.8097 154515.1437 102551.8855 1.38299881 1.513586084 1.944651929 0.820330448 1.5558629 1.099721087 1.154749529 1.11971427 1.506702124 1 16.64599449 -5.258481818 24.99999909 1.195887041 1.603729633 0.398019114 0.244012651 272.3535451 2302168.876 0.064412529 0.105688464 5.51E-06 5.258481818 0.407842592 SFS(ph)EDVISHKGDLR ddPTM_HeLa_A486_30min_R1 1 SFSEDVISHKGDLR 14 1 F8W9J4;Q03001;E9PHM6;Q03001-8;Q03001-14;H0YC82;Q03001-10;F6QMI7;A0A494C1D7 F8W9J4;F6QMI7;A0A494C1D7 DST Dystonin 1 0 S(0.435)FS(0.565)EDVISHKGDLR 140.81 7.18E-07 60172000 147480 92875 66397 41458 119950 68333 114190 102760 66280 168430 TRUE FALSE FALSE 137142.4136 85515.24676 92107.69657 96516.31917 104904.7525 59902.76922 85618.45422 79363.79124 72025.20377 126254.0317 1.086241855 0.677326859 0.729542616 0.764461284 0.830902198 0.474462228 0.678144318 0.628604015 0.570478446 1 16.94596993 -4.260053023 24.55531946 0.692746323 1.086242016 0.407193245 0.136803315 89.07030486 1577412.486 0.032850476 0.199000799 5.49E-05 4.260053023 0.393495693 SFS(ph)IS(ph)PSRR ddPTM_HeLa_A485_30min_R1 1 SFSISPSRR 9 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(0.005)FS(0.959)IS(0.7)PS(0.336)RR 59.418 0.015495 202120000 103230 138070 123960 117880 159900 134710 164150 167520 128090 189190 TRUE FALSE FALSE 126193.1574 154216.0855 169817.9624 124319.4859 143979.7946 141763.2073 129078.0115 126435.4573 153796.4881 142028.4148 0.888506413 1.085811495 1.195661887 0.875314183 1.013739362 0.998132715 0.908818223 0.890212409 1.082857176 1 17.11582006 -5.280517847 24.9989576 0.963255212 1.059575123 0.166406379 0.09161039 1336.898971 1751766.527 0.025804019 0.038339338 5.24E-06 5.280517847 0.096319911 SFS(ph)IS(ph)PSRR ddPTM_HeLa_A486_30min_R1 3 SFSISPSRR 9 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(0.403)FS(0.597)IS(0.981)PS(0.019)RR;S(0.003)FS(0.923)IS(0.697)PS(0.377)RR;S(0.418)FS(0.582)IS(0.972)PS(0.028)RR ;; 61.235 0.005652 388757000 623230 635650 570050 218440 810940 640880 661480 690700 560250 673690 TRUE FALSE FALSE 579544.7954 585278.779 790788.6265 508539.3593 709224.3435 561814.7416 495970.7076 533442.6879 608812.9211 504993.639 1.147627912 1.158982478 1.565937797 1.007021317 1.404422331 1.112518452 0.982132584 1.05633546 1.205585326 1 18.94590569 -6.502630665 22.70973175 1.063081875 1.255042955 0.275111567 0.152359771 315.8003537 354195.0095 0.052404707 0.045538817 3.14E-07 6.502630665 0.19196108 SFS(ph)IS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 SFSISPVR 8 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 2 0 S(0.002)FS(0.998)IS(1)PVR 77.541 0.023012 54270000 114380 136660 138450 119760 174680 136300 162900 158990 122300 167310 TRUE FALSE FALSE 139823.4364 152641.1982 189668.4164 126302.1856 157288.2459 143436.4572 128095.0842 119997.4532 146844.4882 125602.6961 1.113220024 1.215270077 1.510066442 1.005569064 1.25226807 1.141985496 1.019843428 0.955373228 1.169118918 1 16.93850791 -6.566141167 3.179358989 1.032472089 1.223050794 0.304788654 0.129963308 0.316009953 6.572165841 0.052991326 0.040958726 2.72E-07 6.566141167 0.190578706 SFS(ph)KEVEER ddPTM_HeLa_A485_30min_R1 1 SFSKEVEER 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.145)FS(0.855)KEVEER 84.892 0.0023867 295280000 319460 245450 272850 661610 636180 432380 745350 739410 389990 1031000 TRUE FALSE FALSE 390522.7749 274153.2424 373788.5692 697752.079 572839.6854 455018.7482 586099.8836 558068.5382 468257.4158 773990.6741 0.504557468 0.354207423 0.482936787 0.901499336 0.74011187 0.587886603 0.757244116 0.721027471 0.604991031 1 19.56195666 -4.28279463 0.1482234 1.000855129 1.03E-51 0.477470813 0.135326446 26.16436429 0.669507182 0.767666583 5.199833561 5.21E-05 4.28279463 -1.000855129 SFS(ph)KEVEER ddPTM_HeLa_A486_30min_R1 2 SFSKEVEER 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.448)FS(0.552)KEVEER;S(0.068)FS(0.932)KEVEER ; 137.6 7.96E-05 11524460000 1112410 1176380 686140 971870 1549430 1761560 2438580 2425580 1033530 2299450 TRUE FALSE FALSE 1034435.803 1083159.364 951831.7835 2262562.476 1355086.042 1544236.637 1828421.491 1873328.384 1123117.213 1723652.753 0.600141648 0.628409268 0.55221783 1.312655621 0.786171135 0.895909361 1.060782973 1.086836302 0.651591343 1 20.71703773 -5.222036994 24.99933316 0.967147593 0.597071396 0.512328849 0.168509523 430.3729498 273054.9182 0.044190054 0.076538068 6.00E-06 5.222036994 -0.370076197 SFS(ph)LDPLMER ddPTM_HeLa_A485_30min_R1 4 SFSLDPLMER 10 0 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4 F8VV64 TNS2 Tensin-2 1 0 SFS(1)LDPLMER;S(0.001)FS(0.999)LDPLMER;SFS(1)LDPLMER;SFS(1)LDPLMER ;;; 153.95 2.56E-06 232282000 554080 710360 696450 618050 883230 677490 863970 918650 681420 854770 TRUE FALSE FALSE 677333.1844 793430.4227 954095.8367 651812.5065 795292.52 712962.3288 679375.7515 693349.6471 818174.7436 641691.5699 1.055543218 1.236466957 1.486844898 1.015772276 1.239368814 1.111067002 1.058726316 1.08050297 1.275028038 1 19.2915205 -5.315271752 24.99997659 1.117960927 1.257306133 0.219688025 0.127497997 491.9492109 228462.2633 0.03569459 0.052943705 4.84E-06 5.315271752 0.139345205 SFS(ph)LDPLMER ddPTM_HeLa_A486_30min_R1 2 SFSLDPLMER 10 0 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4 F8VV64 TNS2 Tensin-2 1 0 S(0.009)FS(0.991)LDPLMER;SFS(1)LDPLMER ; 170.52 2.67E-07 109516000 287460 346910 290380 115418 397050 325790 364490 403390 298700 330590 TRUE FALSE FALSE 267310.5384 319419.5882 402822.9126 268698.9369 347248.2867 285597.3422 273290.7468 311546.9029 324591.5565 247808.1122 1.078699709 1.288979547 1.625543688 1.084302425 1.401278931 1.152493918 1.102832124 1.257210267 1.309850406 1 17.91886389 -6.286152382 24.33887674 1.176700147 1.301957713 0.133559739 0.165358772 1277.501108 1258156.711 0.058157663 0.051317176 5.17E-07 6.286152382 0.125257567 SFS(ph)LEGLTGGAGVGNKPSSSLEVSSANAEELR ddPTM_HeLa_A485_30min_R1 1 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELR 32 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.164)FS(0.834)LEGLT(0.002)GGAGVGNKPSSSLEVSSANAEELR 119.39 1.34E-05 204490000 36669 30792 25778 39605 33286 21446 32734 19431 31748 55789 TRUE FALSE FALSE 44825.89254 34392.85655 35314.35491 41768.52086 29971.92897 22568.8794 25740.11349 14665.51678 38119.53239 41881.82902 1.070294531 0.821188027 0.84319037 0.997294575 0.715630852 0.538870434 0.614589049 0.350164191 0.91016876 1 15.35403683 -5.906337735 5.074224161 0.636746652 0.917131282 0.277942644 0.185498522 0.237323167 10.09957615 0.055828987 0.063643717 1.24E-06 5.906337735 0.280384629 SFS(ph)LEGLTGGAGVGNKPSSSLEVSSANAEELR ddPTM_HeLa_A486_30min_R1 1 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELR 32 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.013)FS(0.987)LEGLTGGAGVGNKPSSSLEVSSANAEELR 155.23 3.00E-10 303370000 49680 50102 34643 13585 42102 49986 49141 45273 38136 44202 TRUE FALSE FALSE 46197.68855 46131.73505 48057.69737 31626.56655 36821.17457 43819.23554 36845.40204 34965.3262 41441.65919 33133.53149 1.394288096 1.39229756 1.450424848 0.954518433 1.111296409 1.32250423 1.112027616 1.055285224 1.250746821 1 15.01600436 -5.24409179 24.98249532 1.125843734 1.410332939 0.632990194 0.103458325 554.8084472 798986.0522 0.028400449 0.049043541 5.70E-06 5.24409179 0.284489205 SFS(ph)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER ddPTM_HeLa_A485_30min_R1 3 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER 40 2 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.001)FS(0.999)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER;S(0.155)FS(0.845)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER;S(0.019)FS(0.981)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER ;; 301.68 3.57E-95 2219960000 381630 401771 337698 348978 513931 415115 546981 543645 396917 550254 TRUE FALSE FALSE 466522.2769 448754.6235 462626.543 368041.7845 462762.2251 436849.7795 430114.0409 410315.2113 476574.6012 413085.8045 1.129359256 1.08634724 1.119928446 0.890957231 1.120256906 1.057527939 1.041222032 0.993292936 1.153693969 1 18.65608196 SFS(ph)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER ddPTM_HeLa_A486_30min_R1 2 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER 40 2 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.153)FS(0.847)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER;SFS(1)LEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER ; 212.37 5.23E-31 1228670000 117329 112927 88089 33779 116300 118803 145164 124425 108117 126444 TRUE FALSE FALSE 109104.843 103978.2532 122199.4199 78639.2191 101712.5695 104146.2938 108842.4318 96096.14368 117488.6686 94781.59939 1.151118399 1.09702995 1.289273664 0.82968867 1.073125693 1.098802873 1.148349812 1.013869193 1.239572548 1 16.53231939 SFS(ph)MHDLTTIQGDEPVGQRPYQPLPEAK ddPTM_HeLa_A486_30min_R1 1 SFSMHDLTTIQGDEPVGQRPYQPLPEAK 28 1 Q6NUK4 Q6NUK4 REEP3 Receptor expression-enhancing protein 3 1 0 S(0.025)FS(0.661)MHDLT(0.302)T(0.011)IQGDEPVGQRPYQPLPEAK 211.77 2.59E-29 195210000 69005 58383 42430 23956 62441 80231 91809 66112 55138 88753 TRUE FALSE FALSE 64168.10584 53756.51845 58860.03231 55770.77867 54609.06754 70332.91495 68837.41714 51059.74081 59917.40623 66528.67111 0.964518076 0.808020325 0.884731821 0.838296899 0.820835087 1.05718202 1.034703023 0.767484754 0.900625328 1 16.0216886 -6.20795037 24.99941354 0.942636499 0.860014202 0.206836182 0.085774491 608.0409714 284182.7212 0.029815692 0.029815668 6.20E-07 6.20795037 -0.082622296 SFS(ph)MQDLR ddPTM_HeLa_A485_30min_R1 6 SFSMQDLR 8 0 E5RGS2;Q9H6H4 E5RGS2 REEP4 Receptor expression-enhancing protein;Receptor expression-enhancing protein 4 1 0 SFS(1)MQDLR;S(0.008)FS(0.992)MQDLR;SFS(1)MQDLR;SFS(1)MQDLR;S(0.016)FS(0.984)MQDLR;SFS(1)MQDLR ;;;;; 150.09 0.00023804 1628934000 2022754 2431290 2593584 2567503 3211179 2083625 2770455 3319898 2726924 4183376 TRUE FALSE FALSE 2472708.649 2715608.216 3553058.65 2707759.188 2891462.744 2192720.383 2178524.657 2505687.81 3274192.634 3140537.353 0.78735209 0.864695404 1.131353731 0.862196142 0.920690448 0.69819911 0.693678951 0.797853211 1.042558093 1 21.58258 -6.107360814 22.83504035 0.822624836 0.919876533 0.042764387 0.13461563 36.67031915 7768.51136 0.045758012 0.045757945 7.81E-07 6.107360814 0.097251697 SFS(ph)MQDLR ddPTM_HeLa_A486_30min_R1 6 SFSMQDLR 8 0 E5RGS2;Q9H6H4 E5RGS2 REEP4 Receptor expression-enhancing protein;Receptor expression-enhancing protein 4 1 0 S(0.002)FS(0.998)MQDLR;S(0.009)FS(0.991)MQDLR;SFS(1)MQDLR;S(0.001)FS(0.999)MQDLR;SFS(1)MQDLR;S(0.028)FS(0.972)MQDLR ;;;;; 141.89 0.00040067 1302730000 1968960 2282091 2016745 607686 2576705 2152839 2307124 2282551 1959514 2287848 TRUE FALSE FALSE 1830946.072 2101249.798 2797682.674 1414723.719 2253510.632 1887243.613 1729857.173 1762863.965 2129366.251 1714955.969 1.067634449 1.225249998 1.631343734 0.824932969 1.314034105 1.100461846 1.008688971 1.027935409 1.241644852 1 20.70974011 -5.27364245 24.99400854 1.083508969 1.299793484 0.256996413 0.18175207 1083.807477 2219822.884 0.050450502 0.075447905 5.33E-06 5.27364245 0.216284514 SFS(ph)PEER ddPTM_HeLa_A485_30min_R1 2 SFSPEER 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.006)FS(0.994)PEER;S(0.007)FS(0.993)PEER ; 98.629 0.0037031 1156500000 1769040 2152100 2050400 1771250 2689500 1922860 2484700 2748700 1956050 2468200 TRUE FALSE FALSE 2162556.845 2403769.374 2808928.284 1868008.902 2421723.937 2023537.976 1953823.547 2074577.015 2348611.293 1852923.164 1.167105516 1.297284972 1.515944287 1.008141589 1.30697483 1.09207873 1.054454704 1.119623876 1.267516829 1 20.82137163 -5.274641486 24.9876247 1.129979331 1.323828946 0.367957021 0.123047085 837.9919958 1586065.421 0.034260713 0.051149087 5.31E-06 5.274641486 0.193849615 SFS(ph)PEER ddPTM_HeLa_A486_30min_R1 2 SFSPEER 7 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.002)FS(0.998)PEER;S(0.161)FS(0.839)PEER ; 101.25 0.0042686 1842380000 868170 1015810 902210 327347 1134370 1009220 1091200 1094190 848630 939980 TRUE FALSE FALSE 807315.7662 935313.5161 1251569.874 762080.3592 992086.737 884712.6974 818170.2185 845066.823 922189.9317 704602.8898 1.145774135 1.327433551 1.776276953 1.081574274 1.408008328 1.255618889 1.161179198 1.199351912 1.308808046 1 19.42645087 -8.300138536 0.29588509 0.951887757 1.388320015 0.214032037 0.181885967 4.339589366 0.943221694 0.622278029 0.271848028 5.01E-09 8.300138536 0.436432258 SFS(ph)PLQPGQAPTGR ddPTM_HeLa_A485_30min_R1 1 SFSPLQPGQAPTGR 14 0 Q7Z3C6;H7C152;Q7Z3C6-2;H7C1G6 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 SFS(1)PLQPGQAPTGR 191.89 7.91E-18 640360000 195160 236360 227880 192460 262010 230270 245040 293540 190820 274300 TRUE FALSE FALSE 238572.6687 264000.2459 312182.2949 202973.6025 235923.3644 242326.5811 192685.2022 221548.8547 229115.8237 205922.0581 1.158558101 1.282039663 1.516021633 0.985681691 1.145692533 1.176787875 0.935719097 1.075886949 1.112633711 1 17.65173885 -5.279588122 24.99885553 1.067970497 1.31518981 0.546814993 0.107138774 621.6498327 856285.6681 0.030585594 0.04546312 5.25E-06 5.279588122 0.247219313 SFS(ph)PLQPGQAPTGR ddPTM_HeLa_A486_30min_R1 1 SFSPLQPGQAPTGR 14 0 Q7Z3C6;H7C152;Q7Z3C6-2;H7C1G6 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 S(0.008)FS(0.992)PLQPGQAPTGR 176.19 1.05E-12 819830000 294970 353210 247010 94409 353700 281290 303780 350960 242850 303040 TRUE FALSE FALSE 274294.1262 325220.3532 342658.8872 219788.9232 309335.6479 246587.2997 227771.0309 271054.0694 263900.4335 227156.8115 1.207510021 1.431699763 1.508468466 0.967564748 1.361771394 1.085537775 1.002703944 1.193246496 1.161754436 1 17.79332904 -5.256827218 24.97146336 1.123374833 1.387473451 0.479294684 0.129484301 341.9021985 1851142.647 0.035001946 0.058165463 5.54E-06 5.256827218 0.264098618 SFS(ph)PTMK ddPTM_HeLa_A485_30min_R1 4 SFSPTMK 7 0 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 0 SFS(0.97)PT(0.03)MK;SFS(0.998)PT(0.002)MK;S(0.007)FS(0.829)PT(0.164)MK;SFS(0.774)PT(0.226)MK ;;; 169.21 0.00047934 2949220000 4004980 3714850 3099220 5147600 5123200 3899440 5808300 5061700 3635950 6578000 TRUE FALSE FALSE 4895873.984 4149269.393 4245750.447 5428800.354 4613116.219 4103608.649 4567309.256 3820310.139 4365651.814 4938225.659 0.991423706 0.84023487 0.859772465 1.0993423 0.934164726 0.830988483 0.924888729 0.773620001 0.884052718 1 22.23556133 -6.146393887 7.374866103 0.871406587 0.943682514 0.108308599 0.086619811 0.570967376 33.05781667 0.029005543 0.029038586 7.14E-07 6.146393887 0.072275927 SFS(ph)PTMK ddPTM_HeLa_A486_30min_R1 4 SFSPTMK 7 0 A3KN83-3;A3KN83-2;A3KN83;A3KN83-4 A3KN83-3 SBNO1 Protein strawberry notch homolog 1 1 0 SFS(0.997)PT(0.003)MK;SFS(0.998)PT(0.002)MK;SFS(0.978)PT(0.022)MK;SFS(0.997)PT(0.003)MK ;;; 192.6 0.0003399 3285610000 5346000 5598700 3229700 1975330 5253600 5651100 6803300 6478500 4374540 6670700 TRUE FALSE FALSE 4971273.007 5155038.622 4480326.334 4598668.068 4594644.5 4953924.738 5101042.382 5003486.975 4753728.649 5000313.301 0.994192305 1.030943125 0.896009123 0.919675986 0.918871323 0.990722869 1.020144554 1.000634695 0.95068616 1 22.25358706 -6.399300832 8.502663343 0.994660503 0.951486207 0.204159257 0.039923978 0.547878771 35.55108757 0.015523554 0.013671132 3.99E-07 6.399300832 -0.043174296 SFS(ph)PVLGPRPR ddPTM_HeLa_A485_30min_R1 1 SFSPVLGPRPR 11 1 Q9ULC8-2;Q9ULC8;Q9ULC8-3 Q9ULC8-2 ZDHHC8 Probable palmitoyltransferase ZDHHC8 1 0 S(0.021)FS(0.979)PVLGPRPR 122.39 4.41E-05 229380000 148470 191720 122950 172970 130610 162130 207610 219140 137390 327810 TRUE FALSE FALSE 181496.6393 214139.9863 168434.3214 182418.9131 117606.0098 170618.8761 163252.4275 165395.5714 164962.9128 246092.9999 0.737512401 0.870158787 0.684433614 0.741260065 0.477892544 0.693310562 0.663376965 0.67208564 0.67032753 1 17.9088441 -10.15789158 7.28321728 1.000000229 0.689223309 0.507827429 0.09154039 3.60E-07 4.17E-08 0.09382106 0.022754933 6.95E-11 10.15789158 -0.31077692 SFS(ph)PVLGPRPR ddPTM_HeLa_A486_30min_R1 1 SFSPVLGPRPR 11 1 Q9ULC8-2;Q9ULC8;Q9ULC8-3 Q9ULC8-2 ZDHHC8 Probable palmitoyltransferase ZDHHC8 1 0 S(0.03)FS(0.97)PVLGPRPR 113.99 0.00019953 194780000 106980 103520 107560 40982 145930 117600 113280 99921 125850 172870 TRUE FALSE FALSE 99481.25445 95316.69819 149210.1126 95408.16712 127626.0987 103091.7077 84936.14585 77171.16956 136758.7793 129582.2268 0.767707554 0.735569225 1.151470508 0.736275101 0.984904348 0.795569811 0.655461385 0.595538227 1.055382229 1 16.98350833 -6.48882242 24.03122317 0.783265322 0.876578481 0.002424417 0.176442197 1249.778837 881884.3874 0.061171193 0.053910047 3.24E-07 6.48882242 0.093313159 SFS(ph)SQRPGMER ddPTM_HeLa_A485_30min_R1 4 SFSSQRPGMER 11 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 S(0.116)FS(0.873)S(0.011)QRPGMER;S(0.026)FS(0.97)S(0.004)QRPGMER;S(0.02)FS(0.96)S(0.02)QRPGMER;S(0.128)FS(0.813)S(0.059)QRPGMER ;;; 155.14 1.74E-07 5291630000 2168930 2876830 2631910 2296040 3451060 2607960 3478810 3178430 2414150 3018630 TRUE FALSE FALSE 2651400.996 3213250.243 3605563.032 2421466.851 3107460.349 2744508.753 2735533.824 2398915.059 2898647.761 2266141.095 1.170007023 1.417939179 1.591058492 1.068541962 1.371256342 1.211093501 1.207133056 1.058590334 1.279111776 1 21.11180626 -7.063045013 0.369069041 1.013041124 1.387402279 0.302705569 0.144710727 1.512031949 0.564921956 0.181735807 0.190937882 8.65E-08 7.063045013 0.374361155 SFS(ph)SQRPGMER ddPTM_HeLa_A486_30min_R1 4 SFSSQRPGMER 11 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 S(0.161)FS(0.77)S(0.068)QRPGMER;S(0.001)FS(0.904)S(0.096)QRPGMER;S(0.13)FS(0.808)S(0.061)QRPGMER;S(0.167)FS(0.797)S(0.036)QRPGMER ;;; 159.58 4.83E-08 5421140000 3260660 3535200 2887780 1045592 3875380 3090630 3513780 3545620 2817350 3193360 TRUE FALSE FALSE 3032104.572 3255057.877 4006005.753 2434191.017 3389293.704 2709339.494 2634595.079 2738359.726 3061560.166 2393721.871 1.266690424 1.359831281 1.673546874 1.01690637 1.41590957 1.131852254 1.100627066 1.143975731 1.278995778 1 21.1908241 -5.764826601 1.180036042 1.143060044 1.399539224 0.285920244 0.165418891 0.623885006 1.836675152 0.067797628 0.099131437 1.72E-06 5.764826601 0.256479179 SFS(ph)SQRPVVDR ddPTM_HeLa_A485_30min_R1 1 SFSSQRPVVDR 11 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.102)FS(0.882)S(0.016)QRPVVDR 110.98 0.00025504 402240000 218320 241000 260710 241040 363730 267360 343900 353280 256900 321490 TRUE FALSE FALSE 266884.5308 269182.8536 357157.478 254207.4049 327515.7641 281358.5562 270422.9556 266637.5261 308457.4736 241348.4596 1.105805818 1.115328658 1.479841548 1.053279583 1.357024464 1.165777303 1.12046688 1.104782382 1.278058597 1 17.88075809 -6.510500532 24.01703578 1.135782125 1.225254587 0.102783627 0.133409093 906.2367312 1758349.049 0.047007445 0.039402041 3.09E-07 6.510500532 0.089472462 SFS(ph)SQRPVVDR ddPTM_HeLa_A486_30min_R1 3 SFSSQRPVVDR 11 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.192)FS(0.774)S(0.034)QRPVVDR;S(0.164)FS(0.811)S(0.025)QRPVVDR;S(0.138)FS(0.831)S(0.031)QRPVVDR ;; 118.08 0.00012385 914900000 933380 989290 844750 334400 1141980 941020 1108350 1137300 864570 1075090 TRUE FALSE FALSE 867954.882 910895.0575 1171859.823 778500.0996 998742.2199 824926.52 831029.1071 878361.6171 939511.6237 805880.4663 1.077026827 1.130310382 1.454136032 0.966024283 1.239318065 1.023633845 1.031206416 1.089940325 1.165820073 1 19.62020634 SFS(ph)SSAEEHS ddPTM_HeLa_A485_30min_R1 2 SFSSSAEEHS 10 0 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 S(0.079)FS(0.763)S(0.079)S(0.079)AEEHS;S(0.293)FS(0.687)S(0.01)S(0.01)AEEHS ; 137.95 2.98E-05 612033000 791010 750010 692800 876540 946960 931440 1300500 1280900 872830 1449400 TRUE FALSE FALSE 966967.4455 837717.1453 949095.5498 924423.1607 852677.3374 980208.7581 1022637.551 966757.2666 1047998.975 1088091.254 0.888682307 0.769896038 0.872257309 0.849582383 0.783645061 0.90085161 0.939845392 0.888489144 0.963153569 1 20.05336812 -7.216205445 0.634596498 0.993922012 0.828453256 0.625586617 0.042195104 0.483157475 0.393327187 0.039663568 0.021668178 6.08E-08 7.216205445 -0.165468756 SFS(ph)SSAEEHS ddPTM_HeLa_A486_30min_R1 2 SFSSSAEEHS 10 0 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 S(0.004)FS(0.976)S(0.006)S(0.014)AEEHS;S(0.027)FS(0.957)S(0.014)S(0.002)AEEHS ; 200.71 9.24E-14 1225410000 1713280 1938580 1628600 271410 2332500 1613810 1898440 1887120 1657600 1547850 TRUE FALSE FALSE 1593187.919 1784959.861 2259237.535 631856.1963 2039936.1 1414714.53 1423430.232 1457463.972 1801282.103 1160258.285 1.37313212 1.538415957 1.947185005 0.544582361 1.758174129 1.21931 1.226821864 1.256154763 1.552483723 1 20.14601457 -9.965207797 0.046194022 1.00E-09 2.271827509 0.089764569 0.358482258 613.503543 5.540165654 174.9980973 102.4912012 1.08E-10 9.965207797 2.271827508 SFSKEELMS(ph)SDLEETAGSTSIPK ddPTM_HeLa_A485_30min_R1 2 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 S(0.004)FS(0.004)KEELMS(0.578)S(0.414)DLEETAGSTSIPK;S(0.003)FS(0.003)KEELMS(0.497)S(0.497)DLEETAGSTSIPK ; 161.72 4.35E-14 2444120000 143406 123988 145730 260450 451910 271024 466450 626730 213774 506710 TRUE FALSE FALSE 175306.17 138487.318 199641.5913 274677.724 406916.2536 285214.3976 366789.147 473023.4848 256676.4809 380396.5223 0.460851137 0.364060421 0.524824965 0.722082637 1.069716019 0.749781822 0.964228444 1.243501076 0.674760325 1 18.53714453 -5.379119793 2.13714681 0.954262201 0.4184757 0.681737601 0.153086713 0.176751266 1.580634913 0.046252822 0.080174836 4.18E-06 5.379119793 -0.535786501 SFSKEELMSS(ph)DLEETAGSTSIPK ddPTM_HeLa_A485_30min_R1 2 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 S(0.001)FS(0.001)KEELMS(0.165)S(0.832)DLEETAGSTSIPK;SFSKEELMS(0.159)S(0.841)DLEETAGSTSIPK ; 267.93 4.66E-62 2209600000 273509 293983 308905 576600 923170 594750 1026160 1379580 501180 1079580 TRUE FALSE FALSE 334350.1335 328361.7545 423181.8141 608098.198 831255.9534 625890.1903 806912.533 1041235.842 601762.2289 810460.5742 0.412543366 0.405154507 0.522149784 0.750311881 1.025658718 0.772264821 0.995622192 1.284745829 0.742494142 1 19.62838248 -5.362836239 1.512284827 0.985757755 0.393765729 0.733223699 0.141746855 0.205635711 0.924413425 0.047259371 0.096059337 4.34E-06 5.362836239 -0.591992026 down SFSKEELMSS(ph)DLEETAGSTSIPK ddPTM_HeLa_A486_30min_R1 5 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 SFSKEELMS(0.111)S(0.888)DLEETAGSTSIPK;SFSKEELMS(0.14)S(0.86)DLEETAGSTSIPK;S(0.002)FS(0.002)KEELMS(0.157)S(0.839)DLEETAGSTSIPK;S(0.003)FS(0.003)KEELMS(0.097)S(0.898)DLEETAGSTSIPK;SFSKEELMS(0.203)S(0.797)DLEETAGSTSIPK ;;;; 210.11 4.75E-29 4967120000 778177 771086 749411 636850 1641990 1113777 1757280 1959799 801784 1127150 TRUE FALSE FALSE 723630.8108 709982.3371 1039603.009 1482618.985 1436036.303 976370.5178 1317589.957 1513595.55 871283.2827 844904.3035 0.856464818 0.840310949 1.230438767 1.754777409 1.699643732 1.15559894 1.559454665 1.791440218 1.031221263 1 19.68842842 -4.902769832 3.745625047 1.468029733 0.848279525 0.40067922 0.275961829 0.197105635 5.264142621 0.072137384 0.165942314 1.25E-05 4.902769832 -0.619750208 SFSKEELMSS(ph)DLEETAGSTSIPKR ddPTM_HeLa_A485_30min_R1 2 SFSKEELMSSDLEETAGSTSIPKR 24 2 O00567 O00567 NOP56 Nucleolar protein 56 1 0 SFSKEELMS(0.036)S(0.964)DLEETAGSTSIPKR;SFSKEELMS(0.036)S(0.964)DLEETAGSTSIPKR ; 143.35 1.73E-09 452870000 145183 193622 165968 182233 465420 342710 565600 920760 246530 389580 TRUE FALSE FALSE 177478.4575 216264.4086 227366.4697 192187.9274 419081.1506 360653.7657 444754.9395 694942.1663 296006.3097 292464.8757 0.606836828 0.739454296 0.777414618 0.657131653 1.432928141 1.233152408 1.520712319 2.37615599 1.012108921 1 18.15790385 -5.786841804 5.893048019 1.497576244 0.702204572 0.484538431 0.366973362 0.141473525 14.79508266 0.113742357 0.133755533 1.63E-06 5.786841804 -0.795371672 SFSLASSSNS(ph)PISQR ddPTM_HeLa_A485_30min_R1 5 SFSLASSSNSPISQR 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 SFSLASS(0.001)S(0.002)NS(0.995)PIS(0.002)QR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR ;;;; 404.86 5.90E-152 11615690000 2348271 3203142 3168752 2437465 3823870 2824295 3632183 3823270 2678885 3334445 TRUE FALSE FALSE 2870635.783 3577721.593 4341005.228 2570617.541 3443152.076 2972170.719 2856137.43 2885607.038 3216512.647 2503229.227 1.146773037 1.429242498 1.73416209 1.026920552 1.37548413 1.187334618 1.140981177 1.152753813 1.284945307 1 21.25535898 -5.28362399 24.99984915 1.181742197 1.43597763 0.35059061 0.16742717 894.8331778 1008385.83 0.046745515 0.069397397 5.20E-06 5.28362399 0.254235433 SFSLASSSNS(ph)PISQR ddPTM_HeLa_A486_30min_R1 4 SFSLASSSNSPISQR 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR;SFSLASSSNS(1)PISQR ;;; 404.86 5.90E-152 8942940000 3032830 3285220 2873630 962847 3709330 2977900 3408460 3215020 2891300 3322680 TRUE FALSE FALSE 2820244.279 3024887.203 3986376.494 2241556.476 3244071.243 2610516.975 2555627.257 2483030.129 3141920.212 2490659.301 1.132328407 1.214492565 1.600530628 0.899985187 1.302494983 1.04812287 1.026084642 0.996936887 1.261481332 1 21.24809626 -5.280691681 24.99973222 1.082456559 1.30565481 0.317370794 0.160479376 995.4716956 1292649.955 0.044385868 0.065944953 5.24E-06 5.280691681 0.223198251 SFSLEGLT(ph)GGAGVGNKPSSSLEVSSANAEELRHPFSGEER ddPTM_HeLa_A485_30min_R1 1 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELRHPFSGEER 40 2 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.037)FS(0.245)LEGLT(0.327)GGAGVGNKPS(0.151)S(0.151)S(0.054)LEVS(0.024)S(0.011)ANAEELRHPFSGEER 51.038 0.018638 668460000 38863 65780 35810 43896 66640 62036 73425 68714 47768 70396 TRUE FALSE FALSE 47507.94027 73472.39879 49057.60918 46293.92733 60005.08761 65284.10903 57737.14892 51861.78376 57354.59945 52847.57274 0.898961633 1.390270073 0.928285002 0.875989661 1.135436965 1.235328429 1.092522247 0.981346561 1.085283514 1 15.68954959 -7.234355145 22.62867322 1.024986254 1.085988173 0.028146869 0.150828033 983.2707556 821516.2055 0.072313783 0.041726489 5.83E-08 7.234355145 0.061001919 SFSQPEAGGS(ph)HHK ddPTM_HeLa_A485_30min_R1 2 SFSQPEAGGSHHK 13 0 B7WPG3;C9IYN3;V9GYK2;Q8WVV9-3;Q8WVV9-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 SFS(0.006)QPEAGGS(0.994)HHK;SFSQPEAGGS(1)HHK ; 100.58 0.00055658 542150000 299710 290720 245220 353980 452380 280620 373940 360860 296650 489760 TRUE FALSE FALSE 366379.4555 324717.1751 335937.0825 373317.0311 407339.4588 295312.8293 294044.6642 272358.5192 356184.934 367671.8454 0.996484937 0.883171173 0.913687264 1.01535387 1.107888635 0.803196745 0.799747568 0.74076523 0.968757707 1 18.48805918 -6.291574889 24.88919989 0.842369649 0.975665035 0.283490729 0.092943002 808.1415894 667449.0048 0.033221322 0.029302387 5.11E-07 6.291574889 0.133295386 SFSQPEAGGS(ph)HHK ddPTM_HeLa_A486_30min_R1 2 SFSQPEAGGSHHK 13 0 B7WPG3;C9IYN3;V9GYK2;Q8WVV9-3;Q8WVV9-2;Q8WVV9-5;Q8WVV9-4;Q8WVV9 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 SFSQPEAGGS(1)HHK;SFSQPEAGGS(1)HHK ; 166.77 4.65E-12 757090000 440730 461250 285750 172761 500650 495420 549230 502840 408350 477220 TRUE FALSE FALSE 409837.1029 424698.8702 396400.0527 402196.3389 437853.8086 434300.1175 411806.8448 388354.3089 443746.1068 357721.0058 1.145689228 1.187234921 1.108126295 1.124329666 1.224009218 1.214074965 1.151195591 1.085634622 1.240480988 1 18.44847531 -10.21445738 7.40133818 0.999999752 1.162850934 0.504992808 0.048843265 2.03E-07 2.15E-08 0.047753222 0.01158184 6.10E-11 10.21445738 0.162851182 SFSS(ph)PENFQR ddPTM_HeLa_A485_30min_R1 2 SFSSPENFQR 10 0 I3L521;F5GXV8;J3KPD3;G3V1T9;F5GY08;Q9Y580 I3L521;F5GY08 RBM7 RNA-binding protein 7 1 0 SFS(0.005)S(0.995)PENFQR;SFS(0.007)S(0.993)PENFQR ; 240.8 6.48E-21 376950000 509220 628360 593280 538860 815320 638350 757450 824240 567430 743390 TRUE FALSE FALSE 622494.2322 701841.236 812758.9604 568296.5573 734143.878 671773.0189 595614.6197 622093.8476 681307.9962 558076.5541 1.115428032 1.257607457 1.456357474 1.018312906 1.315489555 1.203729155 1.067263291 1.114710595 1.220814584 1 19.09010351 -8.071837419 0.287742543 0.972452436 1.265893631 0.222566021 0.119138739 3.500212438 0.858419618 0.362375671 0.199257368 8.48E-09 8.071837419 0.293441195 SFSS(ph)PENFQR ddPTM_HeLa_A486_30min_R1 2 SFSSPENFQR 10 0 I3L521;F5GXV8;J3KPD3;G3V1T9;F5GY08;Q9Y580 I3L521;F5GY08 RBM7 RNA-binding protein 7 1 0 S(0.001)FS(0.159)S(0.84)PENFQR;SFS(0.003)S(0.997)PENFQR ; 237.67 8.22E-21 343110000 813400 889460 786370 311820 1091250 849660 979440 1009960 722020 930360 TRUE FALSE FALSE 756384.8604 818975.9502 1090873.524 725932.7185 954375.2495 744837.5879 734373.7525 780014.1553 784605.2749 697391.8004 1.084590986 1.174341238 1.564219027 1.040925228 1.368492215 1.068033188 1.053028946 1.118473367 1.125056639 1 19.41160988 -6.288632573 24.25934816 1.079079884 1.24873287 0.272802348 0.141511319 731.5246738 652598.5018 0.049072195 0.043289759 5.14E-07 6.288632573 0.169652987 SFSS(ph)QRPVDR ddPTM_HeLa_A486_30min_R1 1 SFSSQRPVDR 10 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 SFS(0.385)S(0.615)QRPVDR 109.16 0.010591 2900900000 4314800 4531000 3423100 1797400 5149600 4489300 4954900 5232400 4191900 5250400 TRUE FALSE FALSE 4012354.802 4171947.058 4748615.994 4184438.036 4503689.15 3935455.81 3715131.612 4041096.742 4555257.267 3935665.666 1.019485684 1.060035941 1.206559804 1.063209731 1.144327169 0.999946678 0.943965247 1.026788626 1.157429938 1 21.90817624 -6.271339445 24.67416362 1.022196582 1.100592249 0.216101249 0.069411416 929.002419 2315366.778 0.025189407 0.022471297 5.35E-07 6.271339445 0.078395667 SFT(ph)PDHVVYAR ddPTM_HeLa_A485_30min_R1 4 SFTPDHVVYAR 11 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 S(0.143)FT(0.857)PDHVVYAR;S(0.114)FT(0.886)PDHVVYAR;S(0.002)FT(0.998)PDHVVYAR;S(0.002)FT(0.998)PDHVVYAR ;;; 188.48 1.31E-10 3776310000 2844104 3019760 2762417 3026501 4156063 2599342 3481991 3455821 2788063 4210274 TRUE FALSE FALSE 3476765.123 3372894.664 3784350.002 3191831.086 3742270.775 2735439.528 2738035.178 2608275.481 3347601.67 3160730.176 1.099987955 1.06712515 1.197302456 1.009839786 1.183989321 0.865445443 0.866266662 0.825212953 1.059122887 1 21.59182645 -6.267138357 24.99065441 0.90872646 1.108277857 0.567876626 0.081676478 323.1270393 1416943.746 0.027275844 0.024725394 5.41E-07 6.267138357 0.199551396 SFT(ph)PDHVVYAR ddPTM_HeLa_A486_30min_R1 3 SFTPDHVVYAR 11 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 S(0.032)FT(0.968)PDHVVYAR;S(0.049)FT(0.951)PDHVVYAR;S(0.014)FT(0.986)PDHVVYAR ;; 179.93 2.64E-10 2691850000 3084390 3456090 2549770 864100 3490420 3259930 3656970 3639170 2756190 2873840 TRUE FALSE FALSE 2868190.189 3182216.842 3537109.229 2011668.469 3052618.977 2857752.981 2741957.427 2810610.434 2995098.768 2154211.758 1.331433726 1.477207071 1.641950572 0.933830419 1.417046845 1.326588702 1.272835605 1.304704806 1.390345567 1 21.03872864 -13.31901242 0.176711448 8.40E-13 1.418244463 0.269055187 0.170092604 144.8551327 1.723171482 52.30154169 0.576080753 4.80E-14 13.31901242 1.418244463 SFTFVVFK ddPTM_HeLa_A485_30min_R1 1 SFTFVVFK 8 0 P50416;P50416-2 P50416 CPT1A "Carnitine O-palmitoyltransferase 1, liver isoform" 0 0 96.253 0.022459 0 10926 11521 9778.3 12007 11584 10119 13790 15003 9802.4 16550 FALSE FALSE TRUE 13356.45101 12868.28073 13395.70008 12662.91201 10430.65629 10648.81519 10843.65385 11323.49073 11769.65177 12424.38958 1.07501869 1.035727401 1.078177724 1.019197919 0.839530684 0.857089608 0.872771558 0.911392117 0.947302215 1 13.60088735 -5.621393768 5.367654164 0.896813339 1.058471102 0.723717118 0.044952371 0.104529993 4.677800337 0.0134825 0.017523195 2.39E-06 5.621393768 0.161657763 SFTSS(ph)SPSS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 SFTSSSPSSPSR 12 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 2 0 SFT(0.001)S(0.106)S(0.877)S(0.016)PS(0.143)S(0.789)PS(0.068)R 102.05 0.0017834 500720000 476510 697160 624840 546950 795670 649470 815660 878440 615580 735170 TRUE FALSE FALSE 582508.0056 778686.7975 855994.3178 576828.4935 716450.301 683475.2449 641387.5777 663001.2127 739121.2596 551905.6488 1.05544853 1.410905649 1.550979447 1.0451578 1.298139098 1.238391465 1.162132656 1.201294486 1.339216696 1 19.07406213 -13.58276629 0.210121392 1.23E-14 1.296607271 0.200238762 0.148399104 195.7005973 2.288847324 82.88474429 0.323151392 2.61E-14 13.58276629 1.296607271 SFTSS(ph)SPSS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 SFTSSSPSSPSR 12 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 2 0 SFTS(0.029)S(0.794)S(0.177)PS(0.002)S(0.996)PS(0.001)R;SFTS(0.221)S(0.76)S(0.019)PSS(1)PSR ; 236.05 2.52E-27 1268100000 2253600 2397800 1964500 721220 2760100 2289900 2539300 2626700 1970650 2653100 TRUE FALSE FALSE 2095634.278 2207789.595 2725207.011 1679036.608 2413902.521 2007395.42 1903940.282 2028657.75 2141467.529 1988746.491 1.05374631 1.11014129 1.370313925 0.844268797 1.213780908 1.009377228 0.957356953 1.02006855 1.076792612 1 20.92342795 -5.266112935 24.99228638 1.023563291 1.171274582 0.287336466 0.115534173 534.4329574 2857934.029 0.031665589 0.04877254 5.42E-06 5.266112935 0.14771129 SFTSSS(ph)PSS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 SFTSSSPSSPSR 12 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 2 0 SFT(0.003)S(0.035)S(0.293)S(0.669)PS(0.054)S(0.946)PSR 127.78 0.00015563 0 251400 315860 279850 236570 376560 296520 360490 404250 283860 345940 TRUE FALSE FALSE 307323.0627 352797.0794 383378.1605 249493.2201 339068.3642 312045.3287 283468.3666 305107.0537 340828.0983 259703.5246 1.183361155 1.358460883 1.4762147 0.960684767 1.305597854 1.20154445 1.091507584 1.174828313 1.312373788 1 17.98650607 -14 0.067058655 0.264946574 1.509434439 0.203689282 0.136715473 538.1060319 2.604253387 63.32126222 8.574534327 1.00E-14 14 1.244487864 SFTSSS(ph)PSS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 SFTSSSPSSPSR 12 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 2 0 S(0.003)FT(0.03)S(0.072)S(0.369)S(0.508)PS(0.059)S(0.952)PS(0.007)R 71.208 0.0053872 0 188690 212640 176950 63877 225740 185290 216010 224480 178410 210580 TRUE FALSE FALSE 175463.8054 195789.632 245469.7789 148708.8842 197425.5843 162430.8037 161962.0133 173370.8044 193874.7224 157849.3974 1.111589961 1.240357171 1.555088477 0.942093455 1.250721178 1.029023908 1.026054049 1.09833048 1.228225927 1 17.26818923 -5.282512139 24.99738162 1.088644869 1.296146478 0.351927374 0.136703144 906.3568462 1075156.134 0.038154963 0.056659427 5.22E-06 5.282512139 0.207501608 SFTSSSPSS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 SFTSSSPSSPSR 12 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SFTSSSPS(0.005)S(0.993)PS(0.002)R 134.18 1.92E-05 776400000 1711900 1759400 1512300 557020 2072000 1587400 1794500 1857100 1581100 1876100 TRUE FALSE FALSE 1591904.65 1619978.736 2097903.061 1296770.71 1812110.439 1391562.728 1345497.12 1434278.87 1718151.021 1406312.349 1.131970897 1.151933806 1.491776036 0.922107177 1.288554738 0.989511846 0.956755532 1.019886423 1.221742113 1 20.42348563 -5.825653914 1.370492808 1.043380124 1.222622645 0.177462463 0.15319921 0.712243517 2.798162351 0.059864502 0.078999324 1.49E-06 5.825653914 0.179242521 SFVEFILEPLYK ddPTM_HeLa_A485_30min_R1 2 SFVEFILEPLYK 12 0 Q15029-3;Q15029;Q15029-2 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 ; ; 182.71 6.16E-09 6529400 19177 17470.6 15368.4 18226.1 24535.5 19928.6 25923.5 25944.4 17419.4 28900.1 FALSE FALSE TRUE 23442.85749 19513.6347 21053.81069 19221.74569 22092.65947 20972.03068 20384.73245 19581.49522 20915.3138 21695.83694 1.080523308 0.899418389 0.97040786 0.885964701 1.018290262 0.966638473 0.939568845 0.902546202 0.96402429 1 14.40513062 -6.757201172 24.00735266 0.943413683 0.965355012 0.013288446 0.056617363 284.2655178 1610240.696 0.02139215 0.015944411 1.75E-07 6.757201172 0.021941329 SFVEFILEPLYK ddPTM_HeLa_A486_30min_R1 2 SFVEFILEPLYK 12 0 Q15029-3;Q15029;Q15029-2 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 ; ; 194.54 1.19E-13 7415500 29337.6 29461.7 20677.8 12967.3 32117.4 31617.6 34107.1 33407.9 25861.6 37049 FALSE FALSE TRUE 27281.18574 27127.04759 28684.79793 30188.52973 28088.93621 27716.94198 25573.14283 25801.65046 28103.30431 27771.68925 0.982338002 0.976787813 1.032879119 1.087025332 1.011423394 0.998028666 0.920834977 0.929063055 1.011940759 1 14.76132731 -6.556812046 7.026107982 0.959269498 1.018984935 0.288179365 0.038510303 0.237241407 36.05568881 0.015735163 0.012256842 2.77E-07 6.556812046 0.059715437 SFVLNLGK ddPTM_HeLa_A485_30min_R1 2 SFVLNLGK 8 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 191.63 4.04E-07 998770000 1816510 1766060 1511470 1889800 2444400 2130500 3073900 3284900 1501830 2604400 FALSE FALSE TRUE 2220586.383 1972585.354 2070625.651 1993034.989 2201026.953 2242049.686 2417136.154 2479273.124 1803233.505 1955171.01 1.135750464 1.008906814 1.059050917 1.01936607 1.125746516 1.146728176 1.236278638 1.268059475 0.922289404 1 20.89886337 -5.862660748 6.233863374 1.138561001 1.052947881 0.055577301 0.101177187 0.43858236 23.19971185 0.031170496 0.035555845 1.37E-06 5.862660748 -0.08561312 SFVLNLGK ddPTM_HeLa_A486_30min_R1 2 SFVLNLGK 8 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 176.41 4.06E-06 1024740000 1685990 2057670 1501070 759500 2329400 2120090 2646600 2437100 1986710 2493100 FALSE FALSE TRUE 1567810.807 1894612.735 2082324.504 1768154.383 2037224.931 1858534.851 1984392.687 1882225.532 2158919.622 1868811.533 0.838934681 1.013806209 1.114250671 0.946138416 1.090117915 0.994500954 1.061847411 1.007177823 1.155236676 1 20.83368965 -4.280530856 3.996253592 1.044205585 0.824003576 0.51983529 0.05932004 0.159514455 5.310138177 0.013760078 0.098500413 5.24E-05 4.280530856 -0.220202009 SGAASMPSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SGAASMPSSPK 11 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 SGAASMPS(0.001)S(0.999)PK;SGAASMPS(0.246)S(0.754)PK ; 152.32 5.07E-06 581582000 767410 672840 475360 1300260 927650 753690 1312410 1204240 612700 1891850 TRUE FALSE FALSE 938117.707 751522.7851 651215.4454 1371289.911 835289.9088 793152.043 1032002.882 908898.2518 735663.27 1420246.612 0.660531558 0.5291495 0.458522795 0.965529437 0.588130189 0.558460789 0.726636398 0.63995805 0.517982767 1 20.43771003 -10.58348786 4.210077876 1.006535901 0.629443871 0.407330597 0.134877299 0.008387324 0.000829775 0.132376784 0.031677224 2.61E-11 10.58348786 -0.37709203 SGAASMPSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SGAASMPSSPK 11 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 SGAASMPS(0.004)S(0.996)PK;SGAASMPS(0.004)S(0.996)PK ; 168.76 4.14E-08 641970000 1067730 892010 411757 660620 829410 1036890 1473720 1276930 672360 1840790 TRUE FALSE FALSE 992887.6408 821323.879 571200.3376 1537956.746 725377.6639 908969.0541 1104979.669 986200.9142 730640.7062 1379844.202 0.719565034 0.595229431 0.413960023 1.114587243 0.525695338 0.658747598 0.800800313 0.714719033 0.529509567 1 20.39607395 -10.87164635 2.734100647 1.143639596 0.677711168 0.223269769 0.181915645 100735325.6 52761559.25 93332800.56 0.043412674 1.34E-11 10.87164635 -0.465928428 SGAFGHLFRPDNFIFGQSGAGNNWAK ddPTM_HeLa_A485_30min_R1 2 SGAFGHLFRPDNFIFGQSGAGNNWAK 26 1 A0A0B4J269;Q13509;Q13509-2;G3V2A3;G3V542 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 ; ; 193.47 1.39E-35 63736000 19103 23356.6 22624.1 17190.5 33178 24249.5 31973.5 34728 21345 27828 FALSE FALSE TRUE 23352.39645 26087.95119 30993.69606 18129.57349 29874.68182 25519.16632 25142.10053 26210.90355 25628.74571 20890.99174 1.117821343 1.24876557 1.483591418 0.867817752 1.43002698 1.221539247 1.203490042 1.254650994 1.226784541 1 14.35059336 -8.094024573 17.52751562 0.999999999 1.231867987 0.157766912 0.158078293 4230.728508 788674.1844 0.143825619 0.037135485 8.05E-09 8.094024573 0.231867988 SGAFGHLFRPDNFIFGQSGAGNNWAK ddPTM_HeLa_A486_30min_R1 2 SGAFGHLFRPDNFIFGQSGAGNNWAK 26 1 A0A0B4J269;Q13509;Q13509-2;G3V2A3;G3V542 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 ; ; 248.18 4.09E-52 71480000 38660 39309 31719 5036.9 46174 36269 42987 44831 33913 32620 FALSE FALSE TRUE 35950.13364 36194.01168 44001.44626 11726.15775 40382.42636 31794.49954 32231.19793 34623.95995 36852.60615 24451.73968 1.470248502 1.480222354 1.799522113 0.479563332 1.651515471 1.30029601 1.318155614 1.416012129 1.507156817 1 14.57764949 SGAHSSAS(ph)PPR ddPTM_HeLa_A485_30min_R1 6 SGAHSSASPPR 11 0 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 NELFE Negative elongation factor E 1 0 SGAHSS(0.001)AS(0.999)PPR;SGAHS(0.002)S(0.002)AS(0.997)PPR;SGAHSSAS(1)PPR;SGAHSS(0.001)AS(0.999)PPR;SGAHS(0.003)S(0.247)AS(0.75)PPR;SGAHS(0.001)S(0.023)AS(0.976)PPR ;;;;; 159.44 1.07E-07 9123750000 302588.5 719025 746678.9 117855.6 802117 430143.9 474899.5 585082 518930.5 274884.6 TRUE FALSE FALSE 369898.2679 803108.7191 1022906.497 124293.753 722255.4151 452665.5695 373433.3423 441589.7221 623075.0914 206360.9281 1.792482091 3.891767334 4.956880677 0.602312435 3.499962041 2.193562384 1.809612632 2.139890173 3.019346236 1 17.65481031 -5.257422918 24.99966676 2.14321189 3.581515643 0.288571758 1.076663838 461.9028376 2875011.208 0.288470543 0.476898466 5.53E-06 5.257422918 1.438303754 SGAHSSAS(ph)PPR ddPTM_HeLa_A486_30min_R1 6 SGAHSSASPPR 11 0 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 NELFE Negative elongation factor E 1 0 SGAHSS(0.006)AS(0.994)PPR;SGAHSS(0.003)AS(0.997)PPR;SGAHSS(0.009)AS(0.991)PPR;SGAHSS(0.001)AS(0.999)PPR;SGAHS(0.004)S(0.015)AS(0.981)PPR;SGAHS(0.009)S(0.093)AS(0.898)PPR ;;;;; 136.27 2.06E-05 6675746000 577170.8 569944 680563 36561.2 831538 372733.2 408023.2 444494.5 657069 115414 TRUE FALSE FALSE 536714.1074 524779.5617 944095.2197 85116.3213 727238.7503 326749.1675 305931.4797 343292.8056 714024.27 86513.58318 6.203813178 6.065863214 10.91268197 0.98384922 8.406064383 3.77685394 3.536224816 3.968079843 8.253319811 1 16.40063904 -5.259335704 24.99606741 4.519183372 7.561293528 0.256610816 2.665834114 286.1277405 3399776.666 0.704362595 1.147130048 5.50E-06 5.259335704 3.042110155 SGAHSSAS(ph)PPRS(ph)R ddPTM_HeLa_A485_30min_R1 1 SGAHSSASPPRSR 13 1 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 NELFE Negative elongation factor E 2 0 S(0.002)GAHS(0.065)S(0.049)AS(0.883)PPRS(1)R 66.893 0.015113 336100000 156280 336830 395020 82016 525260 265040 294300 381940 343020 175540 TRUE FALSE FALSE 191043.9468 376219.3385 541154.3362 86496.3264 472963.2701 278917.0846 231420.4008 288268.6161 411860.9676 131781.1086 1.44970663 2.854880662 4.106463681 0.656363627 3.589006613 2.116517971 1.756096934 2.187480582 3.125341501 1 17.00778404 -10.40527242 2.943542992 0.974635331 2.435070139 0.161131697 0.976542889 98687751.09 118369104.1 21174654.26 0.230444278 3.93E-11 10.40527242 1.460434808 SGAHSSAS(ph)PPRS(ph)R ddPTM_HeLa_A486_30min_R1 1 SGAHSSASPPRSR 13 1 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 NELFE Negative elongation factor E 2 0 S(0.001)GAHS(0.007)S(0.029)AS(0.964)PPRS(1)R 61.821 0.028553 303560000 360880 395250 528480 37661 647340 368560 345360 376200 514120 159940 TRUE FALSE FALSE 335584.1756 363928.9505 733121.6092 87676.71128 566144.581 323090.8144 258947.2752 290547.4724 558684.3355 119889.983 2.799101037 3.035524249 6.114952985 0.731309732 4.722200863 2.694894156 2.159874151 2.423450777 4.659975102 1 16.8713516 -6.475582378 24.96315853 2.643434567 3.475407558 0.07696346 1.541174577 1224.492317 646290.8303 0.52361737 0.461773714 3.35E-07 6.475582378 0.831972991 SGAQAS(ph)STPLSPTR ddPTM_HeLa_A485_30min_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQAS(0.706)S(0.199)T(0.094)PLSPTR 195.6 2.09E-18 564680000 486890 667930 589370 519540 770210 534040 768630 819830 513680 675970 TRUE FALSE FALSE 595197.0007 746038.6033 807402.4887 547921.1547 693525.188 562001.5086 604405.9214 618765.4071 616770.8642 507463.1193 1.172887207 1.470133641 1.591056489 1.07972606 1.366651411 1.107472617 1.191034182 1.219330792 1.215400373 1 18.95294345 -5.272088695 24.99956013 1.184305638 1.417236572 0.405281678 0.133796779 695.0825466 1631724.331 0.036648664 0.055007091 5.34E-06 5.272088695 0.232930934 SGAQAS(ph)STPLSPTR ddPTM_HeLa_A486_30min_R1 3 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.001)GAQAS(0.431)S(0.431)T(0.137)PLSPTR;SGAQAS(0.897)S(0.086)T(0.016)PLSPTR;SGAQAS(0.546)S(0.383)T(0.07)PLS(0.001)PTR ;; 186.42 1.65E-17 2486340000 2190850 2320240 1770740 735983 2612800 2133140 2402290 2495570 1913560 2254380 TRUE FALSE FALSE 2037282.729 2136375.732 2456417.95 1713405.619 2285078.261 1869974.875 1801211.633 1927383.189 2079428.922 1689868.574 1.205586493 1.264225967 1.453614788 1.013928328 1.352222472 1.106580064 1.065888591 1.140552122 1.230527008 1 20.68847962 -5.996352302 1.02972434 1.114094396 1.27930494 0.238252644 0.121772678 0.797111743 1.81391405 0.059617777 0.070674715 1.01E-06 5.996352302 0.165210544 SGAQASS(ph)TPLS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 SGAQAS(0.002)S(0.54)T(0.458)PLS(0.971)PT(0.029)R 264 1.40E-41 6719000000 4713100 5696500 5075400 4796600 8356200 5786100 5835000 6778100 4534200 6560000 TRUE FALSE FALSE 5761512.835 6362656.122 6953001.665 5058626.112 7524227.388 6089051.249 4588304.582 5115760.347 5444172.35 4924712.728 1.169918562 1.291985233 1.411859341 1.027192121 1.527851025 1.236427704 0.931689793 1.038793658 1.105480188 1 22.23160814 -6.651220079 6.049188264 1.023601954 1.288146876 0.485573352 0.130910765 0.181100187 8.969758027 0.049133642 0.037720281 2.23E-07 6.651220079 0.264544923 SGAQASS(ph)TPLSPTR ddPTM_HeLa_A485_30min_R1 2 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQAS(0.14)S(0.43)T(0.43)PLSPTR;SGAQAS(0.379)S(0.436)T(0.185)PLSPTR ; 184.8 1.90E-17 814470000 646370 905930 795750 675930 1056710 752400 993390 1141490 731290 919060 TRUE FALSE FALSE 790152.7765 1011870.633 1090131.039 712854.3444 951500.2421 791794.5006 781144.1112 861537.7877 878053.1952 689955.256 1.145223215 1.46657428 1.580002514 1.033189237 1.379075286 1.147602679 1.132166332 1.248686462 1.272623388 1 19.39614328 -5.264605471 24.99995037 1.189481708 1.404197427 0.326048615 0.146150269 328.8246059 2596457.955 0.039851472 0.062001254 5.44E-06 5.264605471 0.214715719 SGAQASS(ph)TPLSPTR ddPTM_HeLa_A486_30min_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQAS(0.191)S(0.617)T(0.191)PLSPTR 121.95 5.17E-05 369280000 536940 651800 645120 99725 796820 411180 392010 499380 586220 330790 TRUE FALSE FALSE 499303.2788 600148.9942 894927.7409 232164.8398 696875.4055 360452.7922 293924.9517 385682.0754 637034.0216 247958.0309 2.013660445 2.420365221 3.609190384 0.936306999 2.810457088 1.453684685 1.185381859 1.555432885 2.569120344 1 17.91973643 -5.268794557 24.99876916 1.689004534 2.655001346 0.319320512 0.691176034 704.3972671 2394104.884 0.191394001 0.290340458 5.39E-06 5.268794557 0.965996812 SGAQASST(ph)PLS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 SGAQAS(0.001)S(0.058)T(0.941)PLS(1)PTR;S(0.001)GAQAS(0.11)S(0.4)T(0.489)PLS(0.994)PT(0.006)R;SGAQAS(0.079)S(0.383)T(0.539)PLS(0.996)PT(0.004)R ;; 221.34 2.58E-27 6766500000 2444620 2892230 2834270 2565440 4314500 2850930 3446500 3735060 2603890 3305510 TRUE FALSE FALSE 2988417.285 3230451.139 3882784.417 2705583.491 3884933.231 3000200.286 2710127.12 2819030.679 3126466.839 2481507.19 1.204275086 1.301810106 1.564687957 1.090298469 1.565553888 1.20902341 1.092129465 1.136015519 1.259906419 1 21.2427852 -6.51169722 24.20531535 1.135808712 1.345562525 0.336747043 0.148054204 426.6030042 923498.1493 0.051593436 0.04284447 3.08E-07 6.51169722 0.209753813 SGAQASST(ph)PLS(ph)PTR ddPTM_HeLa_A486_30min_R1 5 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 SGAQAS(0.044)S(0.125)T(0.831)PLS(0.996)PT(0.004)R;SGAQASS(0.149)T(0.851)PLS(0.978)PT(0.022)R;SGAQAS(0.067)S(0.411)T(0.522)PLS(0.997)PT(0.003)R;SGAQAS(0.047)S(0.39)T(0.563)PLS(0.999)PT(0.001)R;SGAQASS(0.008)T(0.992)PLS(0.997)PT(0.003)R ;;;; 269.27 4.23E-42 22781040000 4609760 4958270 4113030 1740560 5942400 4630790 5342090 5419210 3726440 4695880 TRUE FALSE FALSE 4286639.629 4565358.627 5705705.367 4052111.643 5197048.781 4059490.212 4005442.579 4185374.184 4049450.82 3520001.083 1.217794974 1.296976484 1.620938526 1.151167726 1.476433859 1.15326391 1.137909474 1.189026391 1.150411811 1 21.74714444 -6.357051824 7.538797199 1.137139266 1.352988243 0.427773173 0.130762466 0.292214991 20.35925532 0.04490832 0.039540809 4.39E-07 6.357051824 0.215848977 SGAQASST(ph)PLSPTR ddPTM_HeLa_A485_30min_R1 2 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQAS(0.259)S(0.207)T(0.534)PLSPTR;SGAQAS(0.319)S(0.319)T(0.362)PLSPTR ; 213.55 5.19E-22 2290710000 1876470 2694820 2514960 2057910 3207640 2334520 3039820 3252800 2166620 2711060 TRUE FALSE FALSE 2293884.278 3009955.757 3445348.36 2170328.412 2888276.099 2456751.857 2390337.624 2455045.7 2601440.761 2035242.635 1.127081478 1.478917405 1.692844038 1.066373303 1.41913109 1.207105145 1.174473049 1.206266839 1.278196867 1 20.95676937 -6.081294111 0.988519558 1.171306664 1.400884213 0.205635344 0.17745867 0.885088149 1.859268315 0.094594061 0.103472553 8.29E-07 6.081294111 0.229577549 SGAQASST(ph)PLSPTR ddPTM_HeLa_A486_30min_R1 2 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQAS(0.038)S(0.443)T(0.519)PLSPTR;SGAQAS(0.029)S(0.275)T(0.695)PLSPTR ; 224.36 3.65E-27 1736230000 1730670 1955320 1416790 583860 2168680 1758470 2003410 2025580 1489180 1852860 TRUE FALSE FALSE 1609358.97 1800373.322 1965409.031 1359255.587 1896663.932 1541527.85 1502135.628 1564399.652 1618263.321 1388891.796 1.158736033 1.296266079 1.41509154 0.978661974 1.365595173 1.109897729 1.081535389 1.126365392 1.165147153 1 20.40550278 -6.898770204 0.280603263 0.994534768 1.307440178 0.258049896 0.119749179 2.695830745 0.656873156 0.216046927 0.310345736 1.26E-07 6.898770204 0.31290541 SGAQASSTPLS(ph)PTR ddPTM_HeLa_A485_30min_R1 10 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQASS(0.001)TPLS(0.956)PT(0.043)R;SGAQASSTPLS(0.994)PT(0.006)R;SGAQASSTPLS(0.987)PT(0.013)R;SGAQASSTPLS(0.909)PT(0.091)R;SGAQASSTPLS(0.937)PT(0.063)R;SGAQASSTPLS(0.997)PT(0.003)R;SGAQAS(0.005)S(0.003)T(0.002)PLS(0.934)PT(0.055)R;SGAQASSTPLS(0.723)PT(0.277)R;SGAQASSTPLS(0.949)PT(0.051)R;SGAQASS(0.001)T(0.003)PLS(0.881)PT(0.115)R ;;;;;;;;; 245.23 1.62E-35 79913380000 12122680 15939930 14468660 12777600 19871960 14073850 18458380 19675100 13358060 16777030 TRUE FALSE FALSE 14819328.34 17803966.15 19821219.43 13475607.93 17893437.89 14810735.02 14514596.32 14849750.88 16038900.11 12594825.18 1.176620408 1.41359375 1.573758996 1.069932114 1.420697599 1.175938118 1.15242539 1.179035887 1.273451587 1 23.58632776 -7.797024254 0.223166926 0.935998061 1.41760337 0.29802004 0.140499135 3.430660742 0.715958794 0.649138605 0.483820908 1.60E-08 7.797024254 0.481605309 SGAQASSTPLS(ph)PTR ddPTM_HeLa_A486_30min_R1 10 SGAQASSTPLSPTR 14 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQASSTPLS(1)PTR;SGAQASSTPLS(0.708)PT(0.292)R;SGAQASSTPLS(1)PTR;SGAQASSTPLS(1)PTR;SGAQASSTPLS(0.991)PT(0.009)R;SGAQASSTPLS(0.95)PT(0.05)R;SGAQASSTPLS(0.969)PT(0.031)R;SGAQASSTPLS(0.991)PT(0.009)R;SGAQASSTPLS(0.997)PT(0.003)R;SGAQASSTPLS(0.899)PT(0.1)R ;;;;;;;;; 252.67 1.77E-41 80453260000 13413280 14321500 11086648 4637725 15006040 12270230 14257660 14968320 11036816 13117630 TRUE FALSE FALSE 12473078.34 13186612.18 15379695.02 10796858.18 13123842.54 10756453.78 10690242.67 11560360.29 11993496.1 9832890.067 1.268505826 1.341071861 1.564107288 1.098035075 1.33468822 1.093925967 1.08719233 1.175682858 1.219732552 1 23.22918408 -5.690480428 1.439378671 1.132859131 1.37257289 0.420254149 0.119741902 0.40458661 1.74141455 0.043705854 0.064792005 2.04E-06 5.690480428 0.23971376 SGAVQGAGSLGPGS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 SGAVQGAGSLGPGSPVR 17 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR ;;; 346.84 3.80E-105 3822010000 995030 1085330 1051750 1081770 1708030 1047740 1394520 1375820 1051490 1446300 TRUE FALSE FALSE 1216370.991 1212249.902 1440836.092 1140864.356 1537972.536 1102598.046 1096569.41 1038397.988 1262514.398 1085764.027 1.120290376 1.116494811 1.327025077 1.050747978 1.416488756 1.015504307 1.00995187 0.956375383 1.162788936 1 20.05027916 SGAVQGAGSLGPGS(ph)PVR ddPTM_HeLa_A486_30min_R1 6 SGAVQGAGSLGPGSPVR 17 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR ;;;;; 382.55 2.60E-135 4428660000 1642780 1587640 1239170 670494 1856450 1595190 1819910 1902460 1373540 1648230 TRUE FALSE FALSE 1527629.605 1461829.624 1719009.81 1560943.917 1623596.73 1398391.677 1364549.269 1469311.388 1492599.553 1235502.48 1.236443982 1.183186313 1.391344686 1.263408162 1.314118552 1.131840445 1.104448831 1.189241958 1.208091103 1 20.23666648 -6.269255172 24.73193115 1.137159853 1.277969125 0.51696158 0.072619462 466.1075218 1474923.546 0.025370095 0.022791279 5.38E-07 6.269255172 0.140809272 SGCDVNS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SGCDVNSPR 9 0 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 1 0 S(0.002)GCDVNS(0.998)PR;S(0.024)GCDVNS(0.976)PR ; 68.069 0.011863 4884000000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SGCDVNS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SGCDVNSPR 9 0 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 1 0 S(0.023)GCDVNS(0.977)PR;S(0.003)GCDVNS(0.997)PR ; 65.5 0.015019 3051900000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SGCS(ph)DLEEAVDSGADKK ddPTM_HeLa_A485_30min_R1 1 SGCSDLEEAVDSGADKK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 S(0.013)GCS(0.987)DLEEAVDSGADKK 120.32 2.94E-05 203580000 166660 130960 135730 345990 215070 163800 283390 267320 161890 408080 TRUE FALSE FALSE 203732.942 146274.6328 185942.1752 364890.5576 193656.8756 172376.3147 222841.4114 201759.3509 194379.8381 306353.1662 0.665026396 0.477470609 0.606953659 1.191078134 0.632136035 0.562671889 0.727400386 0.658584187 0.634495933 1 18.22483624 -11.24648725 2.187855753 2.087143497 0.685992542 0.214760834 0.181247296 13195310.21 2127267.243 70960340.56 0.048836803 5.67E-12 11.24648725 -1.401150955 SGCS(ph)DLEEAVDSGADKK ddPTM_HeLa_A486_30min_R1 2 SGCSDLEEAVDSGADKK 17 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 S(0.498)GCS(0.502)DLEEAVDSGADKK;S(0.032)GCS(0.968)DLEEAVDSGADKK ; 111.66 8.49E-05 476490000 322160 347840 220419 202860 373070 458680 534910 529780 255250 605620 TRUE FALSE FALSE 299578.2476 320275.8916 305771.1398 472268.332 326276.0819 402092.7251 401069.8603 409160.659 277375.2755 453968.8101 0.659909318 0.705501974 0.673550986 1.040310086 0.71871916 0.885727645 0.883474484 0.901296851 0.611000733 1 18.79223366 -5.143219166 21.91284231 0.854827856 0.682216378 0.335908446 0.117689315 8.804238874 1606.982051 0.030274464 0.052437045 7.19E-06 5.143219166 -0.172611478 SGCSEAQPPES(ph)PETR ddPTM_HeLa_A485_30min_R1 2 SGCSEAQPPESPETR 15 0 A0A494BZT8;Q9Y6A5;A0A494C117;H0Y8F2 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 SGCSEAQPPES(0.965)PET(0.035)R;SGCSEAQPPES(1)PETR ; 346.18 5.93E-104 2277000000 382220 540080 532780 410360 627000 456560 558320 655100 443670 533970 TRUE FALSE FALSE 467243.5204 603237.6579 729877.4928 432776.9277 564573.6785 480464.7756 439030.3709 494435.6978 532710.4994 400861.106 1.165599539 1.504854547 1.820774033 1.079618155 1.408402237 1.198581674 1.09521818 1.233433951 1.328915406 1 18.61274292 -5.289760492 24.99181717 1.207006034 1.497854063 0.361428199 0.185064024 781.5208737 689647.2994 0.052080978 0.0772658 5.13E-06 5.289760492 0.290848029 SGCSEAQPPES(ph)PETR ddPTM_HeLa_A486_30min_R1 2 SGCSEAQPPESPETR 15 0 A0A494BZT8;Q9Y6A5;A0A494C117;H0Y8F2 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 SGCSEAQPPES(1)PETR;SGCSEAQPPES(0.999)PET(0.001)R ; 333.65 2.01E-90 1473040000 623480 596190 514070 208194 694470 573700 682550 669440 528340 649040 TRUE FALSE FALSE 579777.2717 548945.7331 713131.6713 484686.1535 607363.0969 502922.727 511768.7707 517023.1258 574136.9366 486516.1595 1.191691705 1.12831963 1.465792364 0.996238551 1.248392443 1.033722554 1.051904979 1.062704939 1.18009839 1 18.8921282 -5.29785441 24.99937391 1.088162944 1.248573416 0.35894545 0.109615496 661.8422029 454361.4046 0.029981199 0.044470498 5.04E-06 5.29785441 0.160410472 SGDAAIVDMVPGKPMCVESFSDYPPLGR ddPTM_HeLa_A485_30min_R1 3 SGDAAIVDMVPGKPMCVESFSDYPPLGR 28 1 P68104;Q5VTE0;A0A087WVQ9 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 0 ;; ;; 190.28 2.47E-33 458078000 357397 389880 346153 383748 544998 393047 548874 562252 378601 512559 FALSE FALSE TRUE 436898.7296 435473.0745 474209.3993 404711.1815 490736.0855 413626.3332 431602.586 424358.8154 454582.748 384787.4742 1.135428669 1.131723623 1.232393025 1.051778472 1.275343192 1.074947499 1.121664854 1.102839473 1.181386553 1 18.55370231 SGDAAIVDMVPGKPMCVESFSDYPPLGR ddPTM_HeLa_A486_30min_R1 1 SGDAAIVDMVPGKPMCVESFSDYPPLGR 28 1 P68104;Q5VTE0;A0A087WVQ9 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 0 87.489 0.0038247 158740000 93058 80971 53422 47453 85720 74496 96215 97658 60337 100370 FALSE FALSE TRUE 86535.11475 74554.56307 74108.42909 110472.9821 74968.19829 65305.44094 72140.98934 75423.40526 65567.05974 75236.6987 1.150171608 0.990933472 0.985003733 1.468339043 0.996431257 0.86799982 0.958853732 1.002481589 0.871477097 1 16.19914893 -5.983759056 24.99986607 0.940455653 1.139003183 0.361540238 0.131135974 286.9707794 441735.0485 0.041628973 0.047190399 1.04E-06 5.983759056 0.19854753 SGDEGS(ph)EDEAPSGED ddPTM_HeLa_A486_30min_R1 1 SGDEGSEDEAPSGED 15 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 S(0.02)GDEGS(0.98)EDEAPSGED 137.84 6.12E-06 144300000 161490 164010 125260 53114 166120 149420 166610 171050 153470 186730 TRUE FALSE FALSE 150170.3849 151013.2503 173764.0266 123652.0762 145283.6806 130986.0796 124922.4158 132105.649 166772.9032 139971.5926 1.072863301 1.07888499 1.241423516 0.883408368 1.037951186 0.935804738 0.892484064 0.943803286 1.191476785 1 17.09477453 -5.266467585 24.99976484 0.977701192 1.125840041 0.342059103 0.093410732 470.2416721 2337998.508 0.026121551 0.040120872 5.41E-06 5.266467585 0.148138849 SGDET(ph)PGSEVPGDK ddPTM_HeLa_A485_30min_R1 1 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 SGDET(1)PGSEVPGDK 261.79 1.73E-53 0 701040 550280 397150 1026900 601600 534680 822380 631010 479380 1344200 TRUE FALSE FALSE 856983.9294 614630.4592 544072.3118 1082996.947 541702.5917 562675.018 646671.7948 476253.8081 575587.1689 1009115.678 0.849242508 0.609078297 0.539157525 1.073213874 0.536809212 0.557592187 0.640830193 0.471951649 0.570387698 1 19.94466013 -10.21829122 4.658719483 1.000080705 0.646277129 0.273858838 0.170983854 40655042.2 89171557.08 22242.90105 0.041777558 6.05E-11 10.21829122 -0.353803576 SGDET(ph)PGSEVPGDK ddPTM_HeLa_A486_30min_R1 2 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 SGDET(1)PGSEVPGDK;SGDET(0.979)PGS(0.021)EVPGDK ; 280.5 1.56E-67 741940000 2076200 2044500 884580 882690 1538860 2408800 2582300 2264300 1676390 3087100 TRUE FALSE FALSE 1930669.102 1882486.374 1227113.066 2054946.929 1345841.83 2111626.747 1936181.227 1748768.319 1821700.835 2314070.066 0.834317478 0.813495841 0.530283453 0.888022778 0.581590786 0.91251634 0.836699483 0.75571105 0.787228037 1 21.14200112 -6.293329524 24.9982307 0.841804693 0.73194064 0.216481504 0.120501997 1228.121053 962702.8813 0.041142644 0.036287637 5.09E-07 6.293329524 -0.109864053 SGDLGDMEPLKGT(ph)TPLMQK ddPTM_HeLa_A485_30min_R1 1 SGDLGDMEPLKGTTPLMQK 19 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716-21;O60716-11;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-24;O60716-27;O60716-29;O60716-31;O60716-32 O60716-5 CTNND1 Catenin delta-1 1 0 SGDLGDMEPLKGT(0.5)T(0.5)PLMQK 70.345 0.006524 127220000 281410 189940 157670 437050 243400 248270 402090 310650 202530 713590 TRUE FALSE FALSE 344008.6836 212151.8307 215998.6942 460924.9348 219166.2414 261269.0333 316180.1867 234462.6004 243175.9133 535705.1457 0.642160499 0.396023507 0.403204442 0.860407891 0.409117297 0.487710517 0.590213085 0.437670988 0.453936116 1 19.03107963 -10.83384618 2.776702988 1.1664588 0.518402375 0.522754966 0.137566875 46082066.7 34369914.44 51229281.13 0.033680974 1.47E-11 10.83384618 -0.648056425 SGEISLPIKEEPS(ph)PISK ddPTM_HeLa_A485_30min_R1 1 SGEISLPIKEEPSPISK 17 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5;I3L2A0 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 SGEISLPIKEEPS(1)PISK 208.27 1.16E-25 567390000 181820 115460 77915 337250 230480 180840 344020 321750 129820 465110 TRUE FALSE FALSE 222265.2317 128962.0426 106739.0008 355673.1135 207532.6019 190308.5028 270517.3166 242840.308 155873.6832 349166.6367 0.636559191 0.369342397 0.305696449 1.018634303 0.594365498 0.545036332 0.774751331 0.695485429 0.446416315 1 18.41355619 -14 0.137597909 2.258553727 0.463776548 0.261124929 0.197475526 203.4735729 1.725509079 71.49651417 1.320861149 1.00E-14 14 -1.794777179 SGEISLPIKEEPS(ph)PISK ddPTM_HeLa_A486_30min_R1 2 SGEISLPIKEEPSPISK 17 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5;I3L2A0 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 SGEISLPIKEEPS(0.998)PIS(0.002)K;SGEISLPIKEEPS(1)PISK ; 223.07 1.55E-34 729440000 820620 666970 270100 514010 614520 970720 1435130 1252020 586940 1471610 TRUE FALSE FALSE 763098.7757 614116.8681 374689.9535 1196641.257 537441.1714 850962.436 1076045.295 966962.3774 637816.4318 1103109.277 0.691770789 0.556714444 0.339667122 1.084789405 0.48720574 0.771421702 0.975465728 0.876578955 0.578198774 1 20.07314429 -5.250733142 24.92680751 0.809652216 0.532117172 0.331662784 0.191322103 865.5031512 2015104.759 0.051325013 0.087758017 5.61E-06 5.250733142 -0.277535044 SGELTALEFS(ph)ASPGLR ddPTM_HeLa_A486_30min_R1 1 SGELTALEFSASPGLR 16 0 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895;Q12774-2 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 SGELTALEFS(0.546)AS(0.454)PGLR 70.529 0.0086228 16771000 37307 38700 31627 29851 37410 35783 52987 49839 32769 45185 TRUE FALSE FALSE 34691.97195 35633.27106 43873.8214 69494.63659 32717.68897 31368.45727 39729.09216 38491.74768 35609.4433 33870.3819 1.024256888 1.052048104 1.295344751 2.051781902 0.965967525 0.926132376 1.172974438 1.136442683 1.051344606 1 15.04773663 SGELTALEFSAS(ph)PGLRR ddPTM_HeLa_A485_30min_R1 1 SGELTALEFSASPGLRR 17 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895;Q12774-2 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 SGELTALEFS(0.051)AS(0.949)PGLRR 125.23 1.11E-05 94334000 41480 57736 48620 46813 68614 52206 77308 76977 45265 65902 TRUE FALSE FALSE 50707.0829 64487.72296 66606.56125 49370.27565 61782.54924 54939.42543 60790.51425 58098.27005 54349.2703 49473.84424 1.024927084 1.303471035 1.346298479 0.997906599 1.248792169 1.110474156 1.228740463 1.174322937 1.098545527 1 15.59437838 -8.003710856 2.378255289 1.000684549 1.185364436 0.220034713 0.105982975 0.432431543 5.701121118 0.0988843 0.027097282 9.91E-09 8.003710856 0.184679886 SGELTALEFSAS(ph)PGLRR ddPTM_HeLa_A486_30min_R1 2 SGELTALEFSASPGLRR 17 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895;Q12774-2 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 SGELTALEFS(0.016)AS(0.984)PGLRR;SGELTALEFS(0.024)AS(0.976)PGLRR ; 163.85 4.14E-12 179402000 116771 115267 84040 72069 126563 114463 131142 132295 101989 131933 TRUE FALSE FALSE 108585.9559 106132.8231 116582.5387 167780.2742 110688.2884 100341.7188 98328.88452 102174.3165 110829.4886 98896.11806 1.097979962 1.073174814 1.178838371 1.696530435 1.119237949 1.014617366 0.99426435 1.033147898 1.120665713 1 16.59362627 -5.990496615 24.99980627 1.036075138 1.262959484 0.302707616 0.164003269 282.7494223 743801.3361 0.054576224 0.061808462 1.02E-06 5.990496615 0.226884346 SGEQAEGS(ph)PGGPGDSQGR ddPTM_HeLa_A485_30min_R1 2 SGEQAEGSPGGPGDSQGR 18 0 P38936 P38936 CDKN1A Cyclin-dependent kinase inhibitor 1 1 0 SGEQAEGS(1)PGGPGDSQGR;SGEQAEGS(1)PGGPGDSQGR ; 416.97 9.12E-164 623940000 170498 192328 171099 217471 266680 191839 235300 296320 194217 279610 TRUE FALSE FALSE 208424.6919 214819.0866 234395.6401 229350.8901 240128.4028 201883.3934 185026.2328 223647.0554 233194.5704 209908.3728 0.992931769 1.023394559 1.116656934 1.092623829 1.143967721 0.961769131 0.881461898 1.065450855 1.110935058 1 17.67940019 -6.27685516 24.9540659 1.000360226 1.074522213 0.201456504 0.069488505 1427.169024 2310203.373 0.026718657 0.023634851 5.29E-07 6.27685516 0.074161988 SGEQAEGS(ph)PGGPGDSQGR ddPTM_HeLa_A486_30min_R1 1 SGEQAEGSPGGPGDSQGR 18 0 P38936 P38936 CDKN1A Cyclin-dependent kinase inhibitor 1 1 0 SGEQAEGS(1)PGGPGDSQGR 210.43 1.18E-25 368340000 158210 186860 151250 72893 198890 184200 197670 213300 150240 201610 TRUE FALSE FALSE 147120.296 172052.5331 209818.0506 169698.5878 173943.3616 161475.2768 148210.8753 164736.2463 163262.9242 151125.5437 0.973497215 1.138474204 1.388369202 1.122898112 1.150985845 1.06848434 0.980713595 1.090062224 1.080313229 1 17.205388 -6.260379015 2.903544361 1.042811489 1.168138283 0.237381806 0.099365642 0.414854545 7.063551707 0.038665267 0.035942012 5.49E-07 6.260379015 0.125326794 SGES(ph)S(ph)SQLSQEQK ddPTM_HeLa_A485_30min_R1 3 SGESSSQLSQEQK 13 0 Q6ZMI0-4;Q6ZMI0-3;Q6ZMI0-5;Q6ZMI0-2;Q6ZMI0 Q6ZMI0-4 PPP1R21 Protein phosphatase 1 regulatory subunit 21 2 0 S(0.264)GES(0.477)S(0.517)S(0.477)QLS(0.264)QEQK;S(0.219)GES(0.435)S(0.488)S(0.472)QLS(0.386)QEQK;S(0.303)GES(0.557)S(0.592)S(0.506)QLS(0.043)QEQK ;; 90.793 0.0032478 1421700000 658290 1434330 1768010 193805 1504490 1386820 894750 1446770 1511980 300389 TRUE FALSE FALSE 804724.3394 1602062.416 2422070.472 204392.0764 1354697.693 1459431.751 703579.3531 1091947.389 1815420.517 225507.5505 3.568502861 7.104251776 10.74052938 0.906364669 6.007327425 6.471764458 3.119981355 4.842176621 8.050375754 1 17.78281621 -5.260099451 24.99998939 4.609800959 7.134410062 0.180962168 2.683242785 229.339455 4278907.644 0.730993651 1.183168404 5.49E-06 5.260099451 2.524609103 SGES(ph)S(ph)SQLSQEQK ddPTM_HeLa_A486_30min_R1 1 SGESSSQLSQEQK 13 0 Q6ZMI0-4;Q6ZMI0-3;Q6ZMI0-5;Q6ZMI0-2;Q6ZMI0 Q6ZMI0-4 PPP1R21 Protein phosphatase 1 regulatory subunit 21 2 0 S(0.277)GES(0.493)S(0.53)S(0.481)QLS(0.219)QEQK 76.357 0.01541 265930000 323060 590910 736470 9549.4 832600 319320 195050 338420 497370 79417 TRUE FALSE FALSE 300415.1623 544084.1395 1021650.907 22231.4858 728167.5443 279925.545 146246.427 261369.1537 540482.4321 59530.46628 5.046410368 9.139591431 17.16181598 0.373447198 12.23184681 4.70222329 2.456665236 4.390510775 9.079089512 1 15.86134057 -6.391505075 8.850652423 4.384530134 8.803053989 0.196464365 4.518092786 0.566659313 37.88964983 1.566268916 1.37976133 4.06E-07 6.391505075 4.418523855 SGFAFSSSELLDNS(ph)PSEINNEAAPEIWGK ddPTM_HeLa_A486_30min_R1 1 SGFAFSSSELLDNSPSEINNEAAPEIWGK 29 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 SGFAFSSSELLDNS(0.826)PS(0.174)EINNEAAPEIWGK 98.967 0.00059727 28664000 36928 39073 19705 17048 33240 38532 40849 43542 29204 42604 TRUE FALSE FALSE 34339.5379 35976.71318 27335.30372 39688.60556 29070.72925 33778.3136 30628.14814 33628.43712 31735.42623 31935.68109 1.075271819 1.126536587 0.855948669 1.242766843 0.910289941 1.057698237 0.959057302 1.053005164 0.993729432 1 14.9628816 SGFGEISS(ph)PVIR ddPTM_HeLa_A485_30min_R1 5 SGFGEISSPVIR 12 0 P57740;G3V1T4 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 SGFGEIS(0.005)S(0.995)PVIR;SGFGEIS(0.034)S(0.966)PVIR;SGFGEIS(0.095)S(0.905)PVIR;SGFGEIS(0.001)S(0.999)PVIR;SGFGEIS(0.024)S(0.976)PVIR ;;;; 277.54 9.49E-41 4849380000 3559190 4376550 4067370 3789640 5924660 4019860 4963250 5335250 3477540 4745950 TRUE FALSE FALSE 4350919.536 4888349.452 5572059.42 3996658.437 5334780.048 4230333.654 3902811.091 4026771.572 4175450.38 3562872.008 1.221183227 1.372024996 1.563923545 1.121751898 1.497325763 1.187338093 1.095411534 1.130203825 1.17193387 1 21.76460923 -6.468548056 6.249445943 1.113925455 1.354695142 0.489402968 0.123915265 0.196060432 17.2209779 0.042951294 0.037247512 3.40E-07 6.468548056 0.240769686 SGFGEISS(ph)PVIR ddPTM_HeLa_A486_30min_R1 6 SGFGEISSPVIR 12 0 P57740;G3V1T4 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 SGFGEIS(0.005)S(0.995)PVIR;SGFGEIS(0.008)S(0.992)PVIR;SGFGEIS(0.191)S(0.809)PVIR;SGFGEIS(0.062)S(0.938)PVIR;SGFGEIS(0.049)S(0.951)PVIR;SGFGEIS(0.029)S(0.971)PVIR ;;;;; 234.83 1.30E-27 4607340000 6005450 6247540 4753470 1927390 6666850 5747540 6357770 6515890 4925950 6249540 TRUE FALSE FALSE 5584498.967 5752462.177 6594140.886 4487061.325 5830631.507 5038466.952 4766988.7 5032364.088 5352935.312 4684614.506 1.192093599 1.227947821 1.407616545 0.957829362 1.244634217 1.075535019 1.017583986 1.074232273 1.142662925 1 22.1594989 -5.263845487 24.99990434 1.081225787 1.271092169 0.507605643 0.091199703 181.469583 1885511.043 0.024982287 0.039138857 5.45E-06 5.263845487 0.189866382 SGFS(ph)SPSPSQTSSLGTAFTQHHRPVITGPR ddPTM_HeLa_A485_30min_R1 1 SGFSSPSPSQTSSLGTAFTQHHRPVITGPR 30 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;B1AKN6 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.067)GFS(0.465)S(0.409)PS(0.058)PSQTSSLGTAFTQHHRPVITGPR 127.77 2.02E-06 709830000 103850 99067 119990 70808 154420 93423 112740 130020 104100 95569 TRUE FALSE FALSE 126951.0742 110652.0239 164379.2942 74676.06174 139045.4026 98314.48382 88652.178 98132.39114 124991.9151 71745.40712 1.769466218 1.542287212 2.291147278 1.040847975 1.938039077 1.370324426 1.235649522 1.367786386 1.742159117 1 16.13059886 -5.884798891 0.828966763 1.34881478 1.793318556 0.209748683 0.345091852 1.093993043 1.654620824 0.187898992 0.271001332 1.30E-06 5.884798891 0.444503776 SGFSS(ph)PSPSQTSSLGTAFTQHHRPVITGPR ddPTM_HeLa_A485_30min_R1 1 SGFSSPSPSQTSSLGTAFTQHHRPVITGPR 30 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;B1AKN6 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.023)GFS(0.119)S(0.763)PS(0.095)PSQTSSLGTAFTQHHRPVITGPR 170.44 1.16E-14 643530000 71531 104200 97651 48893 112420 85542 108680 125200 102380 104720 TRUE FALSE FALSE 87442.82417 116385.2836 133776.1685 51563.90079 101227.0701 90020.84685 85459.63017 94494.50369 122926.7269 78615.23123 1.112288583 1.480441916 1.701657127 0.65590217 1.287626691 1.145081499 1.087061996 1.201987226 1.563650262 1 16.26252123 -5.224656902 24.98047411 1.147736519 1.436360343 0.223157065 0.253033723 912.1350218 619466.8613 0.067952934 0.117693623 5.96E-06 5.224656902 0.288623824 SGFSSPS(ph)PSQTSSLGTAFTQHHRPVITGPR ddPTM_HeLa_A485_30min_R1 1 SGFSSPSPSQTSSLGTAFTQHHRPVITGPR 30 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;B1AKN6 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 SGFS(0.001)S(0.004)PS(0.844)PS(0.151)QTSSLGTAFTQHHRPVITGPR 103.5 0.00013336 905370000 140310 134940 121850 217340 184760 148390 246050 254460 142170 333950 TRUE FALSE FALSE 171521.4754 150720.0592 166927.3856 229212.7339 166364.6457 156159.4709 193479.4075 192053.286 170702.2149 250702.4109 0.684163646 0.601191104 0.665838773 0.914282129 0.66359412 0.622887791 0.771749289 0.766060786 0.680895785 1 17.93561634 -14 0.252678703 2.787263786 0.684319202 0.514100706 0.085516897 160.7707502 1.592444197 148.5895925 0.127443723 1.00E-14 14 -2.102944585 SGFSSPS(ph)PSQTSSLGTAFTQHHRPVITGPR ddPTM_HeLa_A486_30min_R1 1 SGFSSPSPSQTSSLGTAFTQHHRPVITGPR 30 1 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;B1AKN6 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 SGFS(0.009)S(0.046)PS(0.943)PS(0.002)QTSSLGTAFTQHHRPVITGPR 166.51 1.73E-14 868360000 367740 336900 247760 178780 368000 424710 452090 485620 270790 555620 TRUE FALSE FALSE 341963.325 310202.817 343699.3072 416208.875 321842.0085 372313.5983 338972.3003 375054.927 294262.2952 416489.1355 0.821061814 0.744804103 0.825229947 0.999327088 0.77275007 0.893933519 0.813880295 0.900515512 0.706530543 1 18.66791934 -11.53308932 2.243337332 3.593424017 0.834839391 0.285668864 0.080004827 2782607.652 337560.0898 37199462.19 0.020612557 2.93E-12 11.53308932 -2.758584626 SGGDFKPTS(ph)PSLPASK ddPTM_HeLa_A486_30min_R1 1 SGGDFKPTSPSLPASK 16 1 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 SGGDFKPT(0.032)S(0.965)PS(0.003)LPASK 101.49 0.00021028 261390000 838560 900140 452520 431490 809300 1152200 1341800 1172000 719460 1326600 TRUE FALSE FALSE 779781.2743 828809.6281 627747.8629 1004530.526 707790.0476 1010053.279 1006067.448 905161.1846 781823.3721 994410.7253 0.784164183 0.83346811 0.631276239 1.010176681 0.711768316 1.015730475 1.011722241 0.910248815 0.786217759 1 19.92348233 -5.26873239 24.98772965 0.916127611 0.75801937 0.34521379 0.107727725 666.7357017 2284408.063 0.030107748 0.045685665 5.39E-06 5.26873239 -0.158108241 SGGGLHSVAEGVRLS(ph)PEPGR ddPTM_HeLa_A485_30min_R1 4 SGGGLHSVAEGVRLSPEPGR 20 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 0 SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR ;;; 246.34 1.09E-46 2925440000 1117380 1603850 1593080 1009030 2231440 1437770 1962590 2189390 1612570 1616940 TRUE FALSE FALSE 1365937.326 1791406.306 2182426.586 1064150.754 2009269.999 1513049.414 1543266.614 1652438.67 1936198.008 1213866.616 1.125277941 1.475785134 1.797913014 0.876662016 1.655264238 1.246470901 1.271364245 1.361301685 1.595066528 1 20.21117847 -10.30136127 5.386464492 0.99993455 1.379414069 0.164548714 0.255743926 0.000190975 2.48E-05 0.235253136 0.057047463 5.00E-11 10.30136127 0.379479519 SGGGLHSVAEGVRLS(ph)PEPGR ddPTM_HeLa_A486_30min_R1 6 SGGGLHSVAEGVRLSPEPGR 20 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 0 SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR ;;;;; 240.41 2.15E-46 3620061000 2569995 2759042 2634164 402819 3563557 2622670 3291962 3174272 2628183 2362076 TRUE FALSE FALSE 2389851.622 2540405.464 3654182.846 937782.9893 3116582.452 2299111.641 2468278.289 2451559.559 2855996.019 1770596.795 1.34974356 1.434773558 2.063814221 0.529642317 1.76018756 1.298495314 1.394037477 1.384595051 1.613013209 1 20.75580428 -11.00195164 2.713514107 0.572735014 1.422072126 0.105361209 0.371739005 105702140.6 103135553.7 281979631.9 0.087848204 9.96E-12 11.00195164 0.849337112 SGGGYGGDRSS(ph)GGGYSGDR ddPTM_HeLa_A485_30min_R1 2 SGGGYGGDRSSGGGYSGDR 19 1 Q92804-2;Q92804;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 1 0 SGGGYGGDRS(0.058)S(0.942)GGGYSGDR;SGGGYGGDRS(0.009)S(0.991)GGGYSGDR ; 154.92 3.75E-09 1689410000 714220 1070250 940920 746360 1359700 913810 1394950 1632240 893040 1046700 TRUE FALSE FALSE 873095.775 1195406.428 1289005.463 787131.7569 1224323.494 961655.6786 1096907.537 1231930.581 1072264.937 785776.9531 1.111124183 1.521305025 1.64042157 1.001724158 1.558105629 1.223827798 1.395952799 1.567786604 1.364591991 1 19.58376033 -8.055957142 22.20335792 0.999999998 1.385451815 0.24310099 0.198810498 7797.874847 3094131.934 0.184211291 0.047563151 8.79E-09 8.055957142 0.385451817 SGGIVIS(ph)PFR ddPTM_HeLa_A485_30min_R1 6 SGGIVISPFR 10 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR ;;;;; 126.34 0.00010715 2284280000 1314208 1670650 1332183 1267785 1413364 1243871 1477300 1435618 1155002 1522110 TRUE FALSE FALSE 1606549.036 1866017.985 1825012.928 1337040.884 1272644.518 1308998.162 1161662.787 1083530.435 1386800.307 1142675.989 1.405953263 1.633024586 1.597139474 1.170096245 1.113740491 1.145554973 1.016616081 0.948239435 1.213642642 1 20.12398495 -5.355982625 3.710358115 1.075674022 1.55561287 0.84317664 0.09118463 0.085887509 2.184970159 0.026720061 0.041692346 4.41E-06 5.355982625 0.479938848 SGGIVIS(ph)PFR ddPTM_HeLa_A486_30min_R1 5 SGGIVISPFR 10 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR;SGGIVIS(1)PFR ;;;; 117.94 0.00036844 2178122000 1591530 1510792 963115 404183 1170594 1297671 1312686 1240896 1208316 1642478 TRUE FALSE FALSE 1479971.966 1391071.34 1336058.921 940958.4503 1023767.185 1137577.546 984238.0786 958371.0694 1313053.804 1231190.818 1.202065467 1.129858442 1.085176158 0.764266949 0.831526007 0.923965261 0.799419606 0.778409858 1.0664909 1 20.23162295 -5.100457726 4.588915416 0.868394354 1.154645606 0.617809389 0.093939916 0.135964631 4.690694551 0.025269336 0.046049081 7.93E-06 5.100457726 0.286251252 SGGIVIS(ph)PFRLEELTNR ddPTM_HeLa_A485_30min_R1 4 SGGIVISPFRLEELTNR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR ;;; 288.96 3.69E-61 2454500000 629331 900087 1007954 942224 1890550 1080114 1629160 1978110 1124165 1434720 TRUE FALSE FALSE 769323.5098 1005344.345 1380838.129 993695.3113 1702320.204 1136667.099 1281076.657 1492975.421 1349774.604 1077070.708 0.714273914 0.933406078 1.282031086 0.9225906 1.580509238 1.055331921 1.18940813 1.386144298 1.253190337 1 20.03868153 -4.394339689 1.483799605 1.228046697 0.571997259 0.424773127 0.183806409 0.788573953 1.962855141 0.050373224 0.709046796 4.03E-05 4.394339689 -0.656049438 SGGIVIS(ph)PFRLEELTNR ddPTM_HeLa_A486_30min_R1 5 SGGIVISPFRLEELTNR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR;S(0.004)GGIVIS(0.996)PFRLEELTNR;S(0.007)GGIVIS(0.993)PFRLEELTNR;S(0.001)GGIVIS(0.999)PFRLEELTNR ;;;; 333.75 6.47E-92 1904941000 616996 713789 749275 407629.1 1286562 755240 1069992 1130429 664513 776843 TRUE FALSE FALSE 573747.7666 657225.7601 1039414.346 948981.1452 1125189.397 662066.1675 802268.6844 873054.9938 722113.5219 582316.4564 0.985285166 1.128640197 1.784964747 1.629665682 1.932264467 1.136952529 1.377719409 1.499279274 1.240070608 1 19.15144386 -8.013704248 3.375590284 1.000706429 1.446679358 0.187023474 0.283248935 0.391073194 11.47937907 0.29005819 0.076982413 9.69E-09 8.013704248 0.445972929 SGGLQT(ph)PECLS(ph)R ddPTM_HeLa_A485_30min_R1 3 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 SGGLQT(1)PECLS(1)R;SGGLQT(1)PECLS(1)R;SGGLQT(1)PECLS(1)R ;; 147.09 4.42E-07 4866840000 2309600 2528560 2604630 3734840 3980220 2740500 4194670 3738850 3010940 4854510 TRUE FALSE FALSE 2823362.552 2824253.096 3568191.025 3938864.852 3583935.321 2883988.342 3298444.487 2821891.175 3615208.04 3644369.998 0.774718965 0.774963327 0.979096806 1.080808166 0.983416976 0.79135443 0.905079476 0.774315225 0.99199808 1 21.79723801 -1.000062518 0.014543576 1.656926042 1.43E-06 0.094859597 0.105520518 21857.36826 24.60287607 1128.351834 1734.832856 0.099985606 1.000062518 -1.656924613 SGGLQT(ph)PECLS(ph)R ddPTM_HeLa_A486_30min_R1 4 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 SGGLQT(1)PECLS(1)R;SGGLQT(1)PECLS(1)R;SGGLQT(1)PECLS(1)R;S(0.005)GGLQT(0.995)PECLS(1)R ;;; 149.31 3.66E-07 3733410000 2947370 4373870 3301080 1732110 4532070 4540630 5482760 5161720 4008100 5012170 TRUE FALSE FALSE 2740774.583 4027268.612 4579346.582 4032439.616 3963615.521 3980453.236 4110915.457 3986509.036 4355525.335 3757090.008 0.729493991 1.071911666 1.218854638 1.073287999 1.054969541 1.059451125 1.094175399 1.061062957 1.159281605 1 21.84118425 -4.265287879 5.445509999 1.092867539 0.716580839 0.778880835 0.057368093 0.062672374 7.087935153 0.014153742 0.088079111 5.43E-05 4.265287879 -0.3762867 SGGLQT(ph)PECLSR ddPTM_HeLa_A485_30min_R1 3 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 SGGLQT(1)PECLSR;SGGLQT(1)PECLSR;SGGLQT(1)PECLSR ;; 129.04 0.00015762 877210000 917800 939850 880580 1352760 1352830 1026470 1523940 1414100 1015290 1853000 TRUE FALSE FALSE 1121961.444 1049757.282 1206343.186 1426657.853 1218137.495 1080214.382 1198337.77 1067289.758 1219049.39 1391081.202 0.806539145 0.754634079 0.867198251 1.02557482 0.875676771 0.776528631 0.861443435 0.767237568 0.876332301 1 20.40777521 -4.785207217 13.30184035 0.873455294 0.780595591 0.203975177 0.078341929 1.993768096 1115.83114 0.02145867 0.045176431 1.64E-05 4.785207217 -0.092859703 SGGLQT(ph)PECLSR ddPTM_HeLa_A486_30min_R1 2 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 SGGLQT(1)PECLSR;SGGLQT(1)PECLSR ; 139.21 2.91E-05 684870000 520670 581270 397850 246268 658070 621490 697050 668000 529380 709860 TRUE FALSE FALSE 484173.7217 535208.0483 551908.1748 573324.3497 575528.7243 544816.8826 522640.7174 515910.9823 575267.0846 532106.4356 0.909918936 1.005828933 1.037213869 1.077461785 1.081604517 1.023887039 0.982210856 0.969563508 1.081112812 1 19.02135533 -2.818973975 8.607982229 1.019003446 0.977306696 0 0.052708107 0 0 0.012590971 0 0.001517141 2.818973975 -0.04169675 SGGLQTPECLS(ph)R ddPTM_HeLa_A485_30min_R1 1 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 SGGLQTPECLS(1)R 73.834 0.009962 1502500000 886020 964240 1019500 1110300 1415900 941020 1220900 1160100 904500 1480000 TRUE FALSE FALSE 1083112.092 1076999.48 1396655.475 1170952.878 1274928.024 990290.3521 960044.7412 875583.656 1086024.853 1111063.237 0.974842885 0.969341298 1.257044089 1.053902999 1.147484663 0.89129972 0.864077497 0.788059245 0.977464483 1 20.0835095 -6.274802331 23.63717978 0.888427438 1.082674228 0.456765961 0.095370833 331.0496317 585577.5352 0.033958844 0.030150243 5.31E-07 6.274802331 0.19424679 SGGLQTPECLS(ph)R ddPTM_HeLa_A486_30min_R1 1 SGGLQTPECLSR 12 0 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 1 0 SGGLQTPECLS(1)R 133.91 1.99E-05 474050000 388210 481670 330620 118780 405610 395120 431960 420730 322450 411840 TRUE FALSE FALSE 360998.4837 443500.715 458644.9183 276525.8428 354734.6116 346374.1117 323879.0392 324938.9635 350400.2256 308712.5834 1.169367571 1.436613662 1.485669658 0.895738812 1.149077267 1.121995443 1.049128078 1.052561447 1.135037068 1 18.23590476 -5.255022441 24.99489348 1.065974023 1.371156638 0.647789745 0.10330889 315.0819888 1227286.242 0.027812633 0.046752086 5.56E-06 5.255022441 0.305182615 SGGLQTPECLS(ph)REGS(ph)PIPHDPEFGSK ddPTM_HeLa_A486_30min_R1 2 SGGLQTPECLSREGSPIPHDPEFGSK 26 1 P85037;P85037-2 P85037 FOXK1 Forkhead box protein K1 2 0 S(0.002)GGLQT(0.013)PECLS(0.986)REGS(0.999)PIPHDPEFGSK;S(0.098)GGLQT(0.138)PECLS(0.779)REGS(0.985)PIPHDPEFGSK ; 121.2 0.00017248 576600000 51387 71220 136858 110764 473130 167323 330680 445700 99805 84519 TRUE FALSE FALSE 47785.03666 65576.26782 189853.0828 257864.1897 413785.6236 146680.3895 247940.3664 344223.8396 108456.1778 63354.89227 0.754243831 1.035062415 2.996660178 4.070154339 6.531233955 2.315218039 3.913515713 5.43326375 1.711883232 1 15.95116841 -4.835073199 2.953038331 3.827268269 0.775801559 0.300956292 1.57302436 0.270261054 4.683902859 0.412827539 1.106782302 1.46E-05 4.835073199 -3.05146671 SGGNSYGSGGASYNPGSHGGYGGGS(ph)GGGSSYQGK ddPTM_HeLa_A485_30min_R1 1 SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK 34 0 Q12906;K7ELV3;Q12906-7 Q12906;Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 SGGNSYGSGGASYNPGS(0.471)HGGYGGGS(0.526)GGGS(0.002)SYQGK 199.55 2.99E-29 231300000 35342 36513 30635 24672 52858 37933 49094 55485 34229 51576 TRUE FALSE FALSE 43203.70597 40782.87773 41968.16133 26019.76889 47595.27192 39919.11322 38604.66584 41877.21675 41098.44633 38719.05239 1.1158255 1.053302579 1.083914991 0.67201461 1.229246818 1.030994065 0.99704573 1.081566159 1.061452794 1 15.24075602 SGGQRHS(ph)PLSQR ddPTM_HeLa_A485_30min_R1 2 SGGQRHSPLSQR 12 1 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 1 0 S(0.002)GGQRHS(0.984)PLS(0.015)QR;S(0.001)GGQRHS(0.989)PLS(0.01)QR ; 70.529 0.0058066 74951000 27847 41319 42091 25900 45592 34907 49595 55340 31560 37189 TRUE FALSE FALSE 34041.46908 46150.89762 57662.21245 27314.85142 41052.7004 36734.67654 38998.6231 41767.77823 37893.80251 27918.46671 1.219317287 1.653059894 2.065378914 0.978379354 1.470449678 1.31578417 1.396875534 1.496062755 1.357302423 1 14.76893209 -12.57986261 0.161166457 1.35E-15 1.584498292 0.20475164 0.26754056 129.6690397 1.821755588 44.47538174 1.217131858 2.63E-13 12.57986261 1.584498292 SGGSGHAVAEPAS(ph)PEQELDQNK ddPTM_HeLa_A485_30min_R1 2 SGGSGHAVAEPASPEQELDQNK 22 0 P46013 P46013 MKI67 Antigen KI-67 1 0 SGGSGHAVAEPAS(1)PEQELDQNK;SGGSGHAVAEPAS(1)PEQELDQNK ; 252.24 1.34E-48 867620000 459980 516610 465240 380040 701110 366640 565550 658960 651910 1263530 TRUE FALSE FALSE 562300.9641 577023.0456 637351.6363 400800.6229 631305.0267 385836.7035 444715.6224 497349.0268 782742.3573 948555.2245 0.592797287 0.608317819 0.671918324 0.422537995 0.665543777 0.406762509 0.468834719 0.52432269 0.825194292 1 19.85537224 -7.920422387 3.32600908 0.996382596 0.543924857 0.744898957 0.088726434 0.106290432 2.337335999 0.086825113 0.023186109 1.20E-08 7.920422387 -0.452457739 SGGSGHAVAEPAS(ph)PEQELDQNK ddPTM_HeLa_A486_30min_R1 2 SGGSGHAVAEPASPEQELDQNK 22 0 P46013 P46013 MKI67 Antigen KI-67 1 0 SGGSGHAVAEPAS(1)PEQELDQNK;SGGSGHAVAEPAS(1)PEQELDQNK ; 226.07 2.99E-36 609510000 566250 556360 424840 43723 636170 602000 616420 545400 529310 362870 TRUE FALSE FALSE 526558.7991 512272.0074 589349.4256 101789.3536 556375.6266 527731.3607 462185.1962 421224.326 575191.017 272004.9901 1.935842423 1.883318417 2.166686079 0.374218699 2.045461101 1.940153232 1.699179107 1.548590435 2.114634061 1 18.05327359 -10.26588724 4.818657433 0.999788545 1.728878169 0.170504403 0.491987729 0.00110787 0.000168782 0.472203886 0.114493694 5.42E-11 10.26588724 0.729089623 SGGSGHAVAEPAS(ph)PEQELDQNKGK ddPTM_HeLa_A485_30min_R1 2 SGGSGHAVAEPASPEQELDQNKGK 24 1 P46013 P46013 MKI67 Antigen KI-67 1 0 SGGSGHAVAEPAS(1)PEQELDQNKGK;SGGSGHAVAEPAS(1)PEQELDQNKGK ; 216.71 3.72E-38 950670000 554750 639010 316160 458490 899000 616500 1180310 1870440 684580 1440690 TRUE FALSE FALSE 678152.2236 713736.6609 433120.7405 483536.1477 809492.4034 648778.9867 928127.1263 1411711.657 821968.9267 1081552.497 0.62701739 0.659918647 0.40046206 0.447075985 0.748454103 0.599858988 0.85814339 1.30526411 0.759989856 1 20.04467226 -6.875875199 3.379360069 1.034159118 0.57500631 0.62503581 0.155088134 0.150994842 3.369571816 0.069739554 0.045018856 1.33E-07 6.875875199 -0.459152807 SGISTNHADYSSS(ph)PAGS(ph)PGAQVSLYNSPSVASPAR ddPTM_HeLa_A485_30min_R1 1 SGISTNHADYSSSPAGSPGAQVSLYNSPSVASPAR 35 0 Q8WV41 Q8WV41 SNX33 Sorting nexin-33 2 0 SGISTNHADY(0.003)S(0.077)S(0.427)S(0.493)PAGS(1)PGAQVSLYNSPSVASPAR 133.71 1.76E-06 291230000 30775 44299 45539 24437 58240 32022 49987 48482 41843 44337 TRUE FALSE FALSE 37620.79258 49479.3827 62385.77114 25771.93143 52441.42111 33698.6224 39306.86909 36591.71348 50240.50629 33284.60186 1.130276178 1.486554741 1.874313275 0.774289912 1.575545993 1.012438801 1.18093253 1.099358605 1.509421879 1 15.02256729 -5.258398385 24.99939644 1.180176636 1.495998695 0.229513975 0.278129347 413.3052283 3397680.729 0.073554706 0.1206786 5.52E-06 5.258398385 0.315822059 SGISTNHADYSSS(ph)PAGSPGAQVSLYNSPSVASPAR ddPTM_HeLa_A485_30min_R1 1 SGISTNHADYSSSPAGSPGAQVSLYNSPSVASPAR 35 0 Q8WV41 Q8WV41 SNX33 Sorting nexin-33 1 0 SGISTNHADYS(0.03)S(0.153)S(0.817)PAGSPGAQVSLYNSPSVASPAR 183.44 4.93E-21 202280000 8953.1 19751 13834 6851.5 16904 11504 15641 13256 11490 13323 TRUE FALSE FALSE 10944.68621 22060.70764 18951.77228 7225.780096 15220.97841 12106.33165 12299.17257 10004.94522 13795.93761 10001.82129 1.094269322 2.205669047 1.894832124 0.722446431 1.521820673 1.210412714 1.229693294 1.000312335 1.379342542 1 13.28797511 -5.239768191 24.93404704 1.173096769 1.778998126 0.388255782 0.331053368 749.2685585 862078.8966 0.085662426 0.148200355 5.76E-06 5.239768191 0.605901357 SGK(ac)FMNPTDQAR ddPTM_HeLa_A485_30min_R1 2 SGKFMNPTDQAR 12 1 Q9Y2W2;F5GXS9;F5H5G4 Q9Y2W2 WBP11 WW domain-binding protein 11 0 1 ; SGK(1)FMNPTDQAR;SGK(1)FMNPTDQAR 165.35 2.13E-05 79029000 23431 18974.1 27973 43019 57063 45264 74110 95132 101602 149714 FALSE TRUE FALSE 28643.14511 21192.95594 38321.37675 45369.01904 51381.60736 47633.95305 58275.79308 71800.72784 121992.5895 112393.0551 0.254847998 0.188561081 0.340958583 0.403663901 0.457159985 0.423815804 0.518499947 0.638835983 1.085410387 1 16.77819337 -7.394178006 0.985164969 1.069196253 0.319902757 0.894815034 0.091841746 0.16860715 0.295341511 0.0887641 0.034146503 4.03E-08 7.394178006 -0.749293496 down SGK(ac)FMNPTDQAR ddPTM_HeLa_A486_30min_R1 2 SGKFMNPTDQAR 12 1 Q9Y2W2;F5GXS9;F5H5G4 Q9Y2W2 WBP11 WW domain-binding protein 11 0 1 ; SGK(1)FMNPTDQAR;SGK(1)FMNPTDQAR 228.28 8.01E-21 162778000 109264 148329 123829 85334 167423 172198 160476 246960 197619 292180 FALSE TRUE FALSE 101605.1578 136574.8698 171778.9051 198661.8645 146423.2462 150953.9615 120323.2075 190732.5991 214748.774 219016.2262 0.46391612 0.62358334 0.78432045 0.907064595 0.668549763 0.689236428 0.549380334 0.870860586 0.980515361 1 17.74067823 -7.481175218 4.635045293 0.97610757 0.682188025 0.5692366 0.114500427 0.16675712 8.218431701 0.07758037 0.032875249 3.30E-08 7.481175218 -0.293919545 SGKNS(ph)QEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A485_30min_R1 2 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 S(0.383)GKNS(0.618)QEDS(0.999)EDS(1)EDKDVK;S(0.431)GKNS(0.603)QEDS(0.968)EDS(0.998)EDKDVK ; 64.68 0.006788 778370000 473160 268710 113458 1706280 456660 356830 1150210 860830 200374 2320760 TRUE FALSE FALSE 578412.8096 300133.297 155430.8356 1799489.756 411193.327 375513.067 904458.2371 649710.0928 240587.2239 1742237.242 0.331994286 0.172268902 0.089213358 1.032861491 0.236014543 0.215534979 0.519136094 0.372917119 0.138090966 1 20.73250966 -11.06260972 2.51280275 1.931169323 0.351824755 0.364613589 0.259136327 40210257.77 14664912.99 214675825.4 0.064445001 8.66E-12 11.06260972 -1.579344568 SGKNS(ph)QEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A486_30min_R1 4 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 S(0.443)GKNS(0.561)QEDS(0.996)EDS(0.999)EDKDVK;S(0.459)GKNS(0.542)QEDS(1)EDS(1)EDKDVK;S(0.09)GKNS(0.91)QEDS(1)EDS(1)EDKDVK;S(0.334)GKNS(0.666)QEDS(1)EDS(1)EDKDVK ;;; 107.87 0.00013004 2541950000 1926570 1589040 288934 5689750 943210 2997960 5848720 4397870 1134670 11484400 TRUE FALSE FALSE 1791527.392 1463118.683 400816.9827 13246025.54 824903.8067 2628102.176 4385308.395 3396571.006 1233024.109 8608631.489 0.208108268 0.169959498 0.046559896 1.538691203 0.095822874 0.305286872 0.509408307 0.394554118 0.143231141 1 23.03735248 -11.04006064 2.607480718 1.774632432 0.391033803 0.169986274 0.410858673 60178606.94 20735294.9 278409598.2 0.10153526 9.12E-12 11.04006064 -1.383598629 SGKNS(ph)QEDSEDSEDKDVK ddPTM_HeLa_A485_30min_R1 3 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 S(0.003)GKNS(0.997)QEDSEDSEDKDVK;S(0.079)GKNS(0.84)QEDS(0.081)EDSEDKDVK;S(0.049)GKNS(0.926)QEDS(0.024)EDSEDKDVK ;; 231.17 2.04E-35 2486610000 1075098 523107 312467 2891230 767000 1022583 2450439 2090406 525601 4054650 TRUE FALSE FALSE 1314249.841 584279.8132 428061.5461 3049170.574 690634.7869 1076123.865 1926882.689 1577730.651 631084.2996 3043900.375 0.431765064 0.19195103 0.140629289 1.001731397 0.22689139 0.353534522 0.6330308 0.518325325 0.207327515 1 21.53748971 -11.24184638 2.307602521 3.107373681 0.417107434 0.3377601 0.247029324 21951077.21 3467076.948 241744273.6 0.065632678 5.73E-12 11.24184638 -2.690266247 SGKNS(ph)QEDSEDSEDKDVK ddPTM_HeLa_A486_30min_R1 6 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 SGKNS(1)QEDSEDSEDKDVK;SGKNS(0.987)QEDS(0.013)EDSEDKDVK;S(0.004)GKNS(0.996)QEDSEDSEDKDVK;S(0.022)GKNS(0.978)QEDSEDSEDKDVK;SGKNS(0.997)QEDS(0.003)EDSEDKDVK;SGKNS(0.838)QEDS(0.162)EDSEDKDVK ;;;;; 257.1 4.44E-58 4791380000 3139476 1926964 473469 3523030 1313699 3414290 6012620 5057850 1592174 9918200 TRUE FALSE FALSE 2919414.945 1774264.355 656808.8767 8201791.884 1148922.622 2993069.614 4508198.881 3906287.967 1730184.924 7434618.163 0.392678532 0.238649022 0.088344668 1.103189391 0.15453687 0.402585519 0.606379343 0.525418775 0.232720079 1 22.82582722 -14 0.358506371 8.003789542 0.405940509 0.28145699 0.277127859 644.1284768 5.1700761 3480.123121 0.20458615 1.00E-14 14 -7.597849032 SGKNSQEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A485_30min_R1 1 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 SGKNS(0.002)QEDS(0.998)EDS(1)EDKDVK 138.93 7.17E-06 385290000 189080 362210 67580 251860 377340 587110 1828700 3258600 127760 537690 TRUE FALSE FALSE 231140.1937 404567.3087 92580.65424 265618.4741 339770.7047 617850.1718 1437983.306 2459423.241 153400.2601 403653.7785 0.572619918 1.002263153 0.22935659 0.658035396 0.841737952 1.530643846 3.562417554 6.092902809 0.380029293 1 18.62275887 -6.586316435 3.65739132 3.171136337 0.683765164 0.294814331 1.469986443 0.243652021 6.624009782 0.572005028 0.439214124 2.59E-07 6.586316435 -2.487371173 SGKNSQEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_A486_30min_R1 1 SGKNSQEDSEDSEDKDVK 18 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 SGKNSQEDS(1)EDS(1)EDKDVK 109.41 0.00041824 233350000 303150 106710 17048 688180 167580 143120 591170 583920 45314 1097600 TRUE FALSE FALSE 281900.7505 98253.91097 23649.44216 1602117.819 146560.5538 125463.3095 443253.0132 450974.1629 49241.85401 822753.8158 0.342630742 0.11942079 0.028744251 1.947262702 0.178134153 0.152491921 0.538743187 0.548127707 0.059850046 1 19.65010129 -10.75659668 2.444775354 1.14000868 0.448798269 0.090438239 0.535900724 44207548.4 30572142.7 37246794.53 0.142611581 1.75E-11 10.75659668 -0.691210411 SGKYDLDFK ddPTM_HeLa_A485_30min_R1 4 SGKYDLDFK 9 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;; ;;; 93.345 0.0038763 2552605000 5927020 4336800 2945250 8462170 6501050 5466130 8813870 7196390 4711460 11021000 FALSE FALSE TRUE 7245465.151 4843951.035 4034820.537 8924436.92 5853782.635 5752328.115 6930714.672 5431464.069 5657006.806 8273667.526 0.875725925 0.585466 0.487670132 1.078655492 0.707519684 0.695257345 0.837683488 0.656475989 0.683736298 1 22.98009555 -10.57860325 2.795476315 1.017770355 0.731567623 0.207063539 0.155938188 58248740.06 58958017.27 7697911.287 0.039175415 2.64E-11 10.57860325 -0.286202733 SGKYDLDFK ddPTM_HeLa_A486_30min_R1 2 SGKYDLDFK 9 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 99.522 0.0025793 2876800000 3909670 3613950 1499710 1951620 4351540 4259770 5202650 4940940 2813770 5705300 FALSE FALSE TRUE 3635622.323 3327567.44 2080437.876 4543469.989 3805729.277 3734242.888 3900891.942 3815995.822 3057669.849 4276655.745 0.850108716 0.778076993 0.486463723 1.062388525 0.889884411 0.873168922 0.912136065 0.892285012 0.714967496 1 22.02805165 -5.273653067 24.99028382 0.900081895 0.712202511 0.367621528 0.120807458 839.2878711 1717255.481 0.03394824 0.05076301 5.33E-06 5.273653067 -0.187879384 SGKYDLDFK(ac)SPDDPSR ddPTM_HeLa_A486_30min_R1 1 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 1 SGKYDLDFK(1)SPDDPSR 109.04 0.002919 29634000 37225 50792 46428 33067 59584 51461 80844 84185 34666 127830 FALSE TRUE FALSE 34615.71973 46767.05694 64406.16498 76981.64711 52110.41912 45112.26504 60615.97612 65017.91325 37670.87679 95820.53597 0.361255752 0.488069248 0.672154088 0.803394036 0.543833517 0.470799548 0.632599009 0.678538401 0.393139909 1 16.54804726 -11.13315517 2.544639142 1.935793987 0.571198189 0.499917644 0.131498558 15321774.14 6847326.019 82076577.46 0.034909402 7.36E-12 11.13315517 -1.364595798 SGKYDLDFKS(ph)PDDPSR ddPTM_HeLa_A485_30min_R1 1 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 SGKYDLDFKS(0.998)PDDPS(0.002)R 109.66 0.00014443 158020000 249580 237750 194590 363210 322290 280470 507050 435370 212260 541180 TRUE FALSE FALSE 305098.21 265552.7943 266576.9386 383051.2426 290201.676 295154.9755 398714.6253 328594.8249 254858.635 406273.7857 0.75096701 0.653630147 0.65615097 0.942840164 0.714300765 0.726492789 0.981393925 0.808801445 0.627307604 1 18.63209275 -14 0.113827302 1.667247684 0.653283252 0.260871259 0.114884676 235.9670755 1.766154557 37.55746191 1.341616481 1.00E-14 14 -1.013964432 SGKYDLDFKS(ph)PDDPSR ddPTM_HeLa_A486_30min_R1 2 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 S(0.002)GKY(0.002)DLDFKS(0.642)PDDPS(0.355)R;SGKYDLDFKS(1)PDDPSR ; 120.11 4.52E-05 285060000 444270 332810 137602 319910 334940 494800 707560 623760 307470 926080 TRUE FALSE FALSE 413128.9672 306436.9235 190885.1795 744766.6474 292928.702 433756.6068 530521.0042 481743.4646 334121.7472 694183.5402 0.595129304 0.441435018 0.274977968 1.072867051 0.421975868 0.624844269 0.764237372 0.693971315 0.481316147 1 19.40495763 -14 0.131871549 2.271465403 0.445810355 0.25151253 0.208869818 207.3518582 1.71348417 70.41475979 1.523378665 1.00E-14 14 -1.825655048 SGKYDLDFKSPDDPSR ddPTM_HeLa_A485_30min_R1 1 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 106.36 0.00058469 62312000 102710 135810 67552 104790 163210 204400 306850 422480 102450 173030 FALSE FALSE TRUE 125557.4852 151691.7981 92542.29587 110514.4124 146960.2393 215102.0679 241288.9908 318866.1176 123010.7753 129896.8054 0.966594096 1.16778698 0.712429344 0.850786222 1.13136146 1.655945789 1.857543687 2.454764893 0.946988457 1 16.98700642 -6.175540482 3.168350678 1.69734801 0.931274697 0.342807879 0.419927436 0.254574886 4.947771916 0.145023397 0.142822341 6.68E-07 6.175540482 -0.766073313 SGKYDLDFKSPDDPSR ddPTM_HeLa_A486_30min_R1 2 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 85.619 0.0040054 28255000 117447 80030 43102 60398 116822 100288 163042 161734 64352 193490 FALSE FALSE TRUE 109214.5718 73688.13134 59792.24871 140609.5963 102169.0954 87915.48621 122247.1671 124910.6988 69930.08317 145038.8446 0.753002219 0.508057904 0.412249897 0.969461641 0.70442574 0.606151314 0.842858115 0.861222379 0.482147271 1 17.14607981 -14 0.115481817 1.936573744 0.532367426 0.214366427 0.174097075 251.3822329 1.900995719 56.31024174 1.920597621 1.00E-14 14 -1.404206318 SGLAFSRPSQLS(ph)TPAAS(ph)PSASEPR ddPTM_HeLa_A486_30min_R1 1 SGLAFSRPSQLSTPAASPSASEPR 24 1 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 2 0 S(0.001)GLAFS(0.071)RPS(0.083)QLS(0.65)T(0.195)PAAS(0.994)PS(0.006)ASEPR 126.18 5.93E-06 203760000 161500 180560 142570 59459 201040 158350 205400 191620 144480 190210 TRUE FALSE FALSE 150179.684 166251.768 197776.9222 138423.5569 175823.6886 138814.387 154006.7475 147992.309 157003.6427 142580.1779 1.053299878 1.166023008 1.387127755 0.970847132 1.233156608 0.973588257 1.080141361 1.03795851 1.101160379 1 17.1214139 -5.950467633 1.433038954 1.047255779 1.177891824 0.187917427 0.111691447 0.67518786 2.86470547 0.044378103 0.051899031 1.12E-06 5.950467633 0.130636045 SGLAFSRPSQLST(ph)PAAS(ph)PSASEPR ddPTM_HeLa_A485_30min_R1 2 SGLAFSRPSQLSTPAASPSASEPR 24 1 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 2 0 SGLAFS(0.004)RPS(0.013)QLS(0.302)T(0.681)PAAS(0.982)PS(0.017)AS(0.001)EPR;SGLAFS(0.002)RPS(0.002)QLS(0.087)T(0.909)PAAS(0.995)PS(0.005)ASEPR ; 135.02 1.96E-06 583590000 377260 535030 475150 415800 622430 488290 704830 740100 427060 560400 TRUE FALSE FALSE 461180.1855 597597.1044 650927.7576 438514.1011 560458.6837 513856.1094 554237.3126 558589.3146 512767.0248 420702.5934 1.096214268 1.420474021 1.547239708 1.042337528 1.332196883 1.221423679 1.317408833 1.327753438 1.218834951 1 18.68244119 -8.113659181 4.088745523 1.000044948 1.292730738 0.281438244 0.138190932 0.766432992 24.83062258 0.131362 0.034465297 7.70E-09 8.113659181 0.29268579 SGLAFSRPSQLST(ph)PAAS(ph)PSASEPR ddPTM_HeLa_A486_30min_R1 2 SGLAFSRPSQLSTPAASPSASEPR 24 1 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 2 0 S(0.001)GLAFS(0.034)RPS(0.034)QLS(0.182)T(0.75)PAAS(0.999)PS(0.001)ASEPR;SGLAFSRPS(0.004)QLS(0.14)T(0.856)PAAS(0.999)PS(0.001)ASEPR ; 141.09 1.05E-07 788430000 513500 537190 438920 182090 582360 469730 601600 571340 416320 564200 TRUE FALSE FALSE 477506.3017 494621.108 608881.5787 423914.7223 509314.9785 411779.4885 451073.3169 441258.3543 452406.9528 422920.6477 1.129068312 1.169536438 1.439706437 1.002350499 1.204280239 0.97365662 1.066567261 1.043359686 1.069720656 1 18.69002747 -5.300395804 24.99951095 1.05698618 1.23844727 0.46119554 0.096192126 480.909445 308613.0258 0.026651613 0.039531341 5.01E-06 5.300395804 0.181461089 SGLCS(ph)PSYVAVTPFSLR ddPTM_HeLa_A485_30min_R1 2 SGLCSPSYVAVTPFSLR 17 0 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 0 SGLCS(0.998)PS(0.002)YVAVTPFSLR;SGLCS(1)PSYVAVTPFSLR ; 255.69 2.06E-51 362440000 323880 310620 340420 337920 429430 315650 504720 394070 431840 656900 TRUE FALSE FALSE 395925.9886 346944.307 466355.5241 356379.7139 386674.4414 332176.9459 396882.4488 297423.7146 518506.3269 493146.9193 0.802856052 0.703531328 0.945672589 0.722664382 0.784095827 0.673586173 0.804795555 0.603113804 1.051423636 1 18.911658 -7.779851661 24.99995942 1.025712152 0.758509763 0.604023234 0.087626051 180.3571487 244879.7471 0.08016635 0.020854319 1.66E-08 7.779851661 -0.267202389 SGLCS(ph)PSYVAVTPFSLR ddPTM_HeLa_A486_30min_R1 2 SGLCSPSYVAVTPFSLR 17 0 H0YBT0;A0A087WUS5;P01106;P01106-2;H0YBG3;A0A0B4J1R1 H0YBT0 MYC Myc proto-oncogene protein 1 0 S(0.005)GLCS(0.651)PS(0.301)Y(0.043)VAVTPFSLR;SGLCS(0.988)PS(0.012)YVAVTPFSLR ; 204.13 3.76E-25 684040000 387120 481360 376810 228610 538940 503270 581870 569950 442480 575080 TRUE FALSE FALSE 359984.8871 443215.2805 522720.9233 532215.6333 471341.1198 441181.6643 436279.9716 440184.8269 480834.5227 431076.2249 0.835084067 1.028159882 1.212595112 1.234620707 1.093405511 1.023442349 1.012071523 1.021129911 1.115428073 1 18.71758347 -6.253721696 21.47979318 1.034338565 1.093720664 0.038346341 0.106639029 296.427771 825012.6971 0.038770209 0.037923375 5.58E-07 6.253721696 0.059382099 SGLEELVLSEMNS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 SGLEELVLSEMNSPSR 16 0 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328;Q4V328-3;Q4V328-2 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 SGLEELVLSEMNS(0.998)PS(0.002)R 217.91 1.09E-33 83683000 129640 151240 163960 138080 205700 147880 185450 179820 137030 190540 TRUE FALSE FALSE 158477.9707 168926.2024 224615.6269 145622.9608 185219.7857 155622.7681 145827.0925 135718.8631 164530.6641 143041.8846 1.10791305 1.180956213 1.570278716 1.018044198 1.294863992 1.087952445 1.019471275 0.948805054 1.150227184 1 17.12607812 -6.427788224 3.914184944 1.027425609 1.237796972 0.317724552 0.143103788 0.291158003 8.054780191 0.052941647 0.04534542 3.73E-07 6.427788224 0.210371362 SGLEELVLSEMNS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 SGLEELVLSEMNSPSR 16 0 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328;Q4V328-3;Q4V328-2 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 SGLEELVLSEMNS(0.991)PS(0.008)R;SGLEELVLSEMNS(1)PSR ; 250.08 3.60E-42 191143000 257851 262412 234254 87345 320860 263999 293450 310768 222931 283466 TRUE FALSE FALSE 239776.9764 241617.5174 324963.4223 203343.5742 280614.7469 231429.4875 220025.7062 240012.9104 242254.8386 212484.2685 1.128445781 1.137107792 1.529352853 0.956981783 1.320637753 1.089160572 1.035491746 1.129556141 1.140107172 1 17.69699651 -6.38148851 9.962974958 1.08363266 1.213323716 0.183144606 0.143083956 0.738576744 57.61402034 0.049039968 0.043222826 4.15E-07 6.38148851 0.129691057 SGLEPAS(ph)SPSKGSEPRPLVPPVSGHATIAR ddPTM_HeLa_A485_30min_R1 1 SGLEPASSPSKGSEPRPLVPPVSGHATIAR 30 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.499)S(0.499)PS(0.003)KGSEPRPLVPPVSGHATIAR 161.38 1.86E-14 1453500000 264650 396370 331940 158710 656560 322070 597850 622780 390620 374120 TRUE FALSE FALSE 323520.4795 442722.0235 454738.4192 167379.9254 591190.5811 338933.0872 470114.4635 470042.2285 469013.851 280858.7692 1.151897377 1.576315473 1.61909995 0.595957626 2.104939016 1.206774096 1.673846485 1.673589292 1.669927745 1 18.09948532 -5.783692561 24.99999919 1.577071637 1.287515285 0.135919866 0.382894067 515.5238882 579154.5936 0.114186209 0.129572355 1.65E-06 5.783692561 -0.289556352 SGLEPAS(ph)SPSKGSEPRPLVPPVSGHATIAR ddPTM_HeLa_A486_30min_R1 3 SGLEPASSPSKGSEPRPLVPPVSGHATIAR 30 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.499)S(0.499)PS(0.003)KGSEPRPLVPPVSGHATIAR;SGLEPAS(0.493)S(0.493)PS(0.014)KGS(0.001)EPRPLVPPVSGHATIAR;SGLEPAS(0.565)S(0.419)PS(0.012)KGS(0.003)EPRPLVPPVSGHATIAR ;; 178.76 5.55E-21 2919270000 1543850 1333360 891260 47509 1675120 1180890 1533650 1451300 1108200 686990 TRUE FALSE FALSE 1435634.087 1227699.698 1236379.741 110603.353 1465010.83 1035203.798 1149914.549 1120870.672 1204259.668 514963.2324 2.787838038 2.384053113 2.40090877 0.214779126 2.844884328 2.010247981 2.233003205 2.176603301 2.338535244 1 18.9741099 -10.75806838 10.01462779 0.995730118 2.130501151 0.198591817 0.69427703 0.065369272 0.001579176 0.663905792 0.161970937 1.75E-11 10.75806838 1.134771033 SGLEPASS(ph)PSKGSEPRPLVPPVSGHATIAR ddPTM_HeLa_A485_30min_R1 2 SGLEPASSPSKGSEPRPLVPPVSGHATIAR 30 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.209)S(0.789)PS(0.002)KGSEPRPLVPPVSGHATIAR;SGLEPAS(0.174)S(0.826)PSKGSEPRPLVPPVSGHATIAR ; 241.41 1.17E-50 2536200000 697040 1129380 861180 440430 1580880 969160 1488350 1737890 936820 1094040 TRUE FALSE FALSE 852094.1432 1261451.167 1179766.319 464489.5757 1423482.036 1019903.719 1170351.864 1311669.753 1124831.181 821315.9623 1.037474227 1.535890235 1.436434177 0.5655431 1.733172252 1.241792155 1.42497153 1.597034287 1.369547449 1 19.64757781 SGLEPASS(ph)PSKGSEPRPLVPPVSGHATIAR ddPTM_HeLa_A486_30min_R1 1 SGLEPASSPSKGSEPRPLVPPVSGHATIAR 30 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.182)S(0.785)PS(0.025)KGS(0.008)EPRPLVPPVSGHATIAR 173.23 4.93E-15 647050000 437060 347070 245460 9130.6 429290 309070 449340 421230 291270 202200 TRUE FALSE FALSE 406424.351 319566.9092 340508.6856 21256.49823 375444.4452 270940.0858 336910.3794 325325.1244 316517.5181 151567.8039 2.681468891 2.108408916 2.246576627 0.140244153 2.477072542 1.787583371 2.222836056 2.146399935 2.088289927 1 17.2096038 SGLFGLPPLAPLPQVDESPVNDSHGRAPEEGDAEVMQLGS(ph)SSPPPAR ddPTM_HeLa_A486_30min_R1 1 SGLFGLPPLAPLPQVDESPVNDSHGRAPEEGDAEVMQLGSSSPPPAR 47 1 Q6NUJ5-2;Q6NUJ5 Q6NUJ5-2 PWWP2B PWWP domain-containing protein 2B 1 0 SGLFGLPPLAPLPQVDES(0.001)PVNDS(0.001)HGRAPEEGDAEVMQLGS(0.333)S(0.333)S(0.333)PPPAR 52.667 0.0045394 33992000 4061 3663.6 3817.3 1029.5 4909.9 5009 6227.6 4411.7 3766.4 4629.2 TRUE FALSE FALSE 3776.344871 3373.282993 5295.460791 2396.728028 4294.054559 4391.040508 4669.388611 3407.252217 4092.874585 3470.018189 1.08827812 0.972122568 1.526061393 0.690696099 1.237473213 1.265422908 1.345638079 0.981911918 1.179496579 1 11.76072751 SGLFTNTEPHS(ph)ITEDVTISAVMLR ddPTM_HeLa_A485_30min_R1 1 SGLFTNTEPHSITEDVTISAVMLR 24 0 P57740;P57740-2;F5GY77 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 SGLFT(0.004)NT(0.004)EPHS(0.968)IT(0.024)EDVTISAVMLR 77.149 0.003665 31121000 29328 40602 38580 29195 46138 34692 53135 52411 29710 50584 TRUE FALSE FALSE 35851.91242 45350.05071 52852.34745 30789.84892 41544.33872 36508.41948 41782.27318 39557.12007 35672.52448 37974.33973 0.944108908 1.194228814 1.391791084 0.810806696 1.094010825 0.961397084 1.100276489 1.04168026 0.939384983 1 15.21273726 -5.265878807 24.99996202 1.001668077 1.178461518 0.303092569 0.12746092 478.7723258 2696139.218 0.035354821 0.054532516 5.42E-06 5.265878807 0.176793441 SGLQLS(ph)LEQGTGENSFR ddPTM_HeLa_A485_30min_R1 2 SGLQLSLEQGTGENSFR 17 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 SGLQLS(1)LEQGTGENSFR;SGLQLS(1)LEQGTGENSFR ; 192.25 4.28E-18 169776000 62415 94295 108055 83177 116887 88222 127716 130319 91037 111544 TRUE FALSE FALSE 76299.00142 105321.98 148029.041 87720.74889 105249.3199 92841.1675 100428.4333 98358.06092 109307.2909 83738.13362 0.911161954 1.257754089 1.767761409 1.047560354 1.256886383 1.108708345 1.199315401 1.174591034 1.305346634 1 16.35359714 SGLQLSLEQGTGENS(ph)FR ddPTM_HeLa_A485_30min_R1 1 SGLQLSLEQGTGENSFR 17 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 SGLQLSLEQGTGENS(1)FR 202.86 4.18E-25 130320000 63824 81799 73163 66014 79056 70977 106890 114650 56105 81150 TRUE FALSE FALSE 78021.42861 91364.68149 100229.0383 69620.17766 71184.90706 74693.24597 84052.07829 86531.90774 67364.75887 60920.79846 1.28070266 1.499728891 1.645235138 1.142798181 1.168482831 1.226071356 1.379694299 1.420400092 1.105776034 1 15.89464723 -13.43813267 0.080113135 7.34E-10 1.6668956 0.346695703 0.152027695 282.0887063 1.779837403 52.08728106 5.934852323 3.65E-14 13.43813267 1.6668956 SGLS(ph)DIILGK ddPTM_HeLa_A485_30min_R1 4 SGLSDIILGK 10 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;K7EJR2;M0R330;M0QX30;M0R1V5 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 S(0.001)GLS(0.999)DIILGK;S(0.004)GLS(0.996)DIILGK;S(0.001)GLS(0.999)DIILGK;S(0.002)GLS(0.998)DIILGK ;;; 122.7 0.00014044 218048000 490934 407194 308677 657029 618829 450520 763825 742100 386573 917870 TRUE FALSE FALSE 600140.5746 454811.7962 422869.4674 692920.8306 557216.2119 474108.5306 600627.5489 560098.8114 464154.6552 689061.9011 0.870953065 0.660044904 0.613688649 1.005600265 0.808659151 0.688049259 0.871659785 0.812842519 0.673603713 1 19.39427407 -10.62261049 3.017423275 1.016069485 0.778701425 0.251967201 0.114572997 99662894.76 102936085.4 12568304.88 0.029802763 2.38E-11 10.62261049 -0.237368059 SGLS(ph)DIILGK ddPTM_HeLa_A486_30min_R1 4 SGLSDIILGK 10 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;K7EJR2;M0R330;M0QX30;M0R1V5 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 S(0.003)GLS(0.997)DIILGK;S(0.003)GLS(0.997)DIILGK;S(0.001)GLS(0.999)DIILGK;S(0.002)GLS(0.998)DIILGK ;;; 126.19 0.00010815 258915000 536499 563607 296119 290360 505359 616054 797322 714383 419125 731177 TRUE FALSE FALSE 498893.1906 518944.7287 410784.2071 675972.754 441972.1619 540051.5211 597823.6024 551733.5858 455455.0925 548085.52 0.910246982 0.946831671 0.749489253 1.233334451 0.806392699 0.985341705 1.090748762 1.006656016 0.830992748 1 19.06404149 SGLS(ph)LEELR ddPTM_HeLa_A485_30min_R1 5 SGLSLEELR 9 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 S(0.003)GLS(0.997)LEELR;S(0.001)GLS(0.999)LEELR;SGLS(1)LEELR;S(0.006)GLS(0.994)LEELR;SGLS(1)LEELR ;;;; 158.08 2.50E-05 656157000 704790 877214 902542 718248 1044176 886645 1015208 1086762 785064 928742 TRUE FALSE FALSE 861568.104 979796.5466 1236429.844 757484.0695 940214.1711 933068.3612 798300.5173 820231.9155 942619.1438 697223.7116 1.235712569 1.405282882 1.773361725 1.086429014 1.348511468 1.33826252 1.144970408 1.176425732 1.351960824 1 19.41126211 -7.805821012 0.210299522 0.914305487 1.499202791 0.272698197 0.174523907 4.143571661 0.799547768 0.959378396 0.718150651 1.56E-08 7.805821012 0.584897304 SGLS(ph)LEELR ddPTM_HeLa_A486_30min_R1 6 SGLSLEELR 9 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 S(0.002)GLS(0.998)LEELR;S(0.002)GLS(0.998)LEELR;SGLS(1)LEELR;SGLS(1)LEELR;SGLS(1)LEELR;SGLS(1)LEELR ;;;;; 159.12 1.89E-05 835094000 1194780 1263160 1101940 452239 1465660 1162100 1313020 1354340 1116810 1319570 TRUE FALSE FALSE 1111032.092 1163062.601 1528640.679 1052835.247 1281823.256 1018731.917 984488.5083 1045986.347 1213615.99 989141.083 1.123229144 1.175830851 1.545422291 1.064393407 1.295895275 1.029915686 0.995296349 1.057469319 1.226939221 1 19.91581678 -6.265291835 24.74718131 1.061351706 1.244442194 0.305983321 0.134760528 377.1532018 2422722.212 0.04669411 0.042761969 5.43E-07 6.265291835 0.183090488 SGLTVPT(ph)SPK ddPTM_HeLa_A485_30min_R1 1 SGLTVPTSPK 10 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 SGLTVPT(0.61)S(0.39)PK 117.86 0.0018023 1762800000 1875500 1741400 1248200 3540400 2482700 1895900 3268400 3353900 1473300 4212200 TRUE FALSE FALSE 2292698.505 1945041.582 1709961.122 3733803.087 2235513.671 1995166.392 2570079.64 2531350.766 1768977.796 3162176.06 0.725038221 0.615095917 0.540754559 1.180770146 0.706954208 0.630947283 0.812756656 0.800509117 0.55941787 1 21.59248626 -11.47330294 2.140342499 3.726742837 0.73542706 0.176830108 0.174280492 6579454.866 584173.3137 86809480.25 0.044256456 3.36E-12 11.47330294 -2.991315777 SGLTVPTS(ph)PK ddPTM_HeLa_A485_30min_R1 7 SGLTVPTSPK 10 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 SGLTVPT(0.001)S(0.999)PK;SGLTVPT(0.005)S(0.995)PK;SGLTVPT(0.117)S(0.883)PK;SGLTVPT(0.006)S(0.994)PK;SGLTVPTS(1)PK;SGLTVPT(0.054)S(0.946)PK;SGLTVPTS(1)PK ;;;;;; 242.97 5.28E-21 72333400000 32180980 29962650 20530370 60503200 41699100 30805710 59626500 55064000 25703330 75186300 TRUE FALSE FALSE 39339527.98 33466521.28 28125408.2 63808336.61 37547391.19 32418649.34 46886811.17 41559467.66 30861752.57 56443739.11 0.696968851 0.592918219 0.498291018 1.130476783 0.665217999 0.574353327 0.830682232 0.736298982 0.546770165 1 25.75031023 -11.08075531 2.662518845 1.490072988 0.701299156 0.217747641 0.172172062 14487801.45 7687471.92 43009357.58 0.04298551 8.30E-12 11.08075531 -0.788773832 SGLTVPTS(ph)PK ddPTM_HeLa_A486_30min_R1 7 SGLTVPTSPK 10 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 SGLTVPT(0.236)S(0.764)PK;SGLTVPTS(1)PK;SGLTVPT(0.006)S(0.994)PK;SGLTVPT(0.162)S(0.838)PK;SGLTVPT(0.303)S(0.697)PK;SGLTVPT(0.018)S(0.982)PK;SGLTVPT(0.381)S(0.619)PK ;;;;;; 223.08 4.80E-17 64660900000 41685500 37023500 16887600 26837000 32654500 44111800 62295000 55326500 28254500 75248100 TRUE FALSE FALSE 38763561.71 34089623.02 23426930.99 62477892.27 28558668.12 38669734.61 46708132.11 42729863.72 30703622.81 56405485.98 0.687230347 0.604367154 0.415330718 1.107656307 0.506310115 0.685566908 0.828077824 0.757548011 0.544337528 1 25.74933215 -14 0.271650092 3.137295294 0.664376827 0.204637424 0.184144942 350.111123 3.399256449 420.9467302 0.221265453 1.00E-14 14 -2.472918467 SGMNS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 SGMNSPLR 8 0 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 SGMNS(1)PLR;SGMNS(1)PLR ; 127.7 0.00058276 1648100000 1082540 1335780 1158650 1236920 1567550 1348650 1729880 1891210 1110830 1666040 TRUE FALSE FALSE 1323347.288 1491987.851 1587282.85 1304489.808 1411479.218 1419263.229 1360277.006 1427387.782 1333763.392 1250726.889 1.058062555 1.192896598 1.269088291 1.042985338 1.128527123 1.134750712 1.087589159 1.141246578 1.066390595 1 20.25433536 -8.751979706 0.285949664 0.963809356 1.161512216 0.311055158 0.061979866 5.776959861 0.8587285 0.336445427 0.092771062 1.77E-09 8.751979706 0.197702859 SGMNS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 SGMNSPLR 8 0 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 SGMNS(1)PLR;SGMNS(1)PLR ; 104.14 0.0015266 1790190000 2658500 2816200 2139300 886300 2924600 2590100 3119200 2842000 2632300 3305200 TRUE FALSE FALSE 2472152.879 2593034.056 2967694.252 2063351.191 2557769.397 2270559.796 2338743.168 2194938.64 2860469.883 2477556.407 0.997819009 1.046609493 1.197831155 0.832817039 1.032375848 0.916451303 0.943971714 0.885928827 1.154552879 1 21.24048647 -5.258964767 24.99812091 0.961542524 1.077338836 0.231487143 0.094955294 314.3440055 3175434.369 0.025179339 0.041121956 5.51E-06 5.258964767 0.115796312 SGMNVAR ddPTM_HeLa_A485_30min_R1 2 SGMNVAR 7 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 157.86 0.00054574 47967000 88110 113694 110906 92642 146899 114007 153078 163267 87365 136546 FALSE FALSE TRUE 107709.7655 126989.5243 151934.7446 97702.79788 132273.2198 119976.2302 120371.6348 123225.5123 104898.3541 102507.5951 1.050749121 1.238830392 1.482180363 0.953127402 1.290374821 1.170413081 1.1742704 1.202111044 1.02332275 1 16.64537128 -7.784705479 5.181065264 1.004040716 1.200308752 0.236126369 0.131996583 0.256741667 17.86384524 0.114925033 0.03249383 1.64E-08 7.784705479 0.196268036 SGMS(ph)PEQSR ddPTM_HeLa_A485_30min_R1 15 SGMSPEQSR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.01)GMS(0.99)PEQSR;SGMS(1)PEQSR;S(0.002)GMS(0.998)PEQSR;S(0.001)GMS(0.999)PEQSR;S(0.022)GMS(0.978)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR ;;;;;;;;;;;;;; 196.78 1.45E-09 56179485000 18143578 23335496 20550168 20076923 26687562 21580309 26755220 29663560 20142199 26355888 TRUE FALSE FALSE 22179554.33 26064379.27 28152530.31 21173674.47 24030454.62 22710220.61 21038748.68 22388525.4 24184553.58 19785850.17 1.120980607 1.317324201 1.422861796 1.070142263 1.214527272 1.147801101 1.063322956 1.131542249 1.222315614 1 24.23796572 -5.27864165 24.94938702 1.129422829 1.290082417 0.394281446 0.093710008 796.7508697 1155569.363 0.026211034 0.038980757 5.26E-06 5.27864165 0.160659588 SGMS(ph)PEQSR ddPTM_HeLa_A486_30min_R1 12 SGMSPEQSR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.328)GMS(0.672)PEQSR;S(0.043)GMS(0.957)PEQSR;SGMS(1)PEQSR;S(0.094)GMS(0.906)PEQSR;SGMS(1)PEQSR;S(0.141)GMS(0.859)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;SGMS(1)PEQSR;S(0.001)GMS(0.997)PEQS(0.002)R;SGMS(0.999)PEQS(0.001)R;S(0.002)GMS(0.998)PEQSR ;;;;;;;;;;; 178.95 3.99E-08 20871338000 20720533 20720724 16302729 7045719 22892817 20357193 22115145 22534994 18331693 22857681 TRUE FALSE FALSE 19268130.64 19078738.37 22615582.27 16402789.9 20021386.42 17845729.5 16581701.81 17404267.8 19920698.91 17133968.9 1.124557349 1.113503735 1.319926656 0.957325766 1.168520063 1.041540907 0.967767708 1.015775615 1.162643578 1 24.03035604 -5.275735817 24.99917573 1.047263554 1.17874671 0.363992639 0.085327076 890.3832056 1556949.239 0.023879715 0.035607802 5.30E-06 5.275735817 0.131483156 SGMVAR ddPTM_HeLa_A485_30min_R1 1 SGMVAR 6 0 Q3KQS6 Q3KQS6 MME 0 0 61.006 0.013614 0 259710 368490 286190 291910 355910 371320 389710 485280 315520 460530 FALSE FALSE TRUE 317481.5935 411581.7001 392063.5904 307856.3041 320474.3507 390761.741 306445.2749 366264.3191 378841.9699 345728.3464 0.918297839 1.19047716 1.134022114 0.890457226 0.926954223 1.130256587 0.886375902 1.059399158 1.095779313 1 18.39927937 -5.230549379 24.99268955 0.998777179 1.091886851 0.120595329 0.100760684 1334.980236 1080113.736 0.027153811 0.047024573 5.88E-06 5.230549379 0.093109671 SGNLTEDDKHNNAK ddPTM_HeLa_A485_30min_R1 3 SGNLTEDDKHNNAK 14 1 P13797-3;P13797;A0A0A0MSQ0;P13797-2 P13797-3 PLS3 Plastin-3 0 0 ;; ;; 223.06 3.17E-22 222716000 160128 148842 98451.7 243864 187120 164489 279447 299489 141364 338757 FALSE FALSE TRUE 195747.9212 166247.7771 134873.0807 257185.6728 168489.6758 173101.3897 219740.8656 226038.8532 169734.4581 254311.1143 0.76971831 0.653718095 0.530346781 1.011303315 0.66253367 0.680667812 0.864063162 0.888828055 0.667428392 1 17.95623499 -13.99999998 0.109839657 1.805923911 0.60491029 0.259779675 0.131896068 230.7031305 1.682581152 41.8163203 1.670248023 1.00E-14 13.99999998 -1.201013622 SGNLTEDDKHNNAK ddPTM_HeLa_A486_30min_R1 1 SGNLTEDDKHNNAK 14 1 P13797-3;P13797;A0A0A0MSQ0;P13797-2 P13797-3 PLS3 Plastin-3 0 0 60.657 0.036414 3845800 4975.3 9072.6 16692 3542.8 12820 7097.8 7721.3 9642.5 8620.7 7460.5 FALSE FALSE TRUE 4626.557162 8353.654134 23155.58943 8247.817443 11211.99606 6222.145601 5789.349072 7447.113244 9367.949217 5592.34224 0.827302222 1.493766614 4.140588761 1.474841326 2.004883746 1.112618887 1.035227964 1.331662642 1.675138755 1 12.44923694 -6.251772731 19.49817221 1.239427351 2.051853801 0.171612871 0.825978591 64.44931903 129995.7658 0.285996272 0.280690156 5.60E-07 6.251772731 0.81242645 SGNMIQSANDKNFDDEDS(ph)VDGNRPSSASSTSSK ddPTM_HeLa_A485_30min_R1 1 SGNMIQSANDKNFDDEDSVDGNRPSSASSTSSK 33 2 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 SGNMIQSANDKNFDDEDS(1)VDGNRPSSASSTSSK 117.65 1.69E-05 147290000 33598 26141 13496 45287 31636 41765 56508 51434 23397 72201 TRUE FALSE FALSE 41071.75919 29197.96255 18488.73202 47760.91414 28486.20876 43951.75082 44434.60417 38819.73085 28092.56329 54202.61946 0.757744913 0.538681762 0.341104031 0.881155092 0.525550408 0.810878722 0.819787025 0.716196583 0.518287927 1 15.72607495 -5.272662144 24.98086185 0.736999159 0.545127376 0.238596102 0.167962392 1078.625028 2400919.778 0.04625072 0.069301458 5.34E-06 5.272662144 -0.191871784 SGNMIQSANDKNFDDEDS(ph)VDGNRPSSASSTSSK ddPTM_HeLa_A486_30min_R1 1 SGNMIQSANDKNFDDEDSVDGNRPSSASSTSSK 33 2 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 SGNMIQSANDKNFDDEDS(1)VDGNRPSSASSTSSK 120.15 9.75E-06 124660000 83648 59520 27616 38159 69077 91287 105870 105610 53447 120240 TRUE FALSE FALSE 77784.70716 54803.41843 38309.65478 88836.08045 60412.71854 80024.93808 79380.20622 81564.90845 58079.82899 90131.12137 0.863017191 0.608041014 0.425043583 0.98563159 0.670275901 0.887872434 0.880719168 0.904958323 0.644392615 1 16.45973772 -5.27200359 24.99615845 0.844390658 0.629634628 0.319296133 0.147698527 829.3734248 1962393.132 0.040608881 0.060954064 5.35E-06 5.27200359 -0.21475603 SGNQVSEFISNTFLDKQHEVEIPS(ph)PTQK ddPTM_HeLa_A485_30min_R1 2 SGNQVSEFISNTFLDKQHEVEIPSPTQK 28 1 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;Q08499-5;Q08499-8;Q08499-4;D6RHE0;Q08499-6 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 SGNQVSEFISNTFLDKQHEVEIPS(0.915)PT(0.085)QK;SGNQVSEFISNTFLDKQHEVEIPS(1)PTQK ; 271.48 3.85E-77 1848990000 275696 272603 185356 372810 460000 396820 751370 834100 291209 586720 TRUE FALSE FALSE 337023.6241 304481.5495 253926.8977 393175.6663 414200.7848 417596.8816 590833.6614 629535.6672 349651.9752 440461.5018 0.76516023 0.691278462 0.576501911 0.892644793 0.940379087 0.948089401 1.341396828 1.429263771 0.793830956 1 18.7486564 -5.934032051 1.303747699 1.158382861 0.685578655 0.496884441 0.181156369 0.340670735 1.209075672 0.07747424 0.093265257 1.16E-06 5.934032051 -0.472804207 SGNQVSEFISNTFLDKQHEVEIPS(ph)PTQK ddPTM_HeLa_A486_30min_R1 1 SGNQVSEFISNTFLDKQHEVEIPSPTQK 28 1 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;Q08499-5;Q08499-8;Q08499-4;D6RHE0;Q08499-6 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 SGNQVSEFISNTFLDKQHEVEIPS(0.999)PT(0.001)QK 235.94 5.63E-50 918730000 627600 446800 249820 306360 626670 678280 1033000 981230 402690 971660 TRUE FALSE FALSE 583608.4809 411393.9408 346556.9944 713221.5626 548067.2051 594600.7098 774532.474 757825.3491 437595.4934 728350.0116 0.80127476 0.564830005 0.475811065 0.97922915 0.752477787 0.81636672 1.063406963 1.040468644 0.600803853 1 19.47427238 -5.267242343 24.99628083 0.892957481 0.609057747 0.408231683 0.154053916 454.394394 1957305.577 0.043497509 0.066490716 5.40E-06 5.267242343 -0.283899734 SGNQVSEFISNTFLDKQHEVEIPS(ph)PTQKEK ddPTM_HeLa_A485_30min_R1 2 SGNQVSEFISNTFLDKQHEVEIPSPTQKEK 30 2 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;Q08499-3;Q08499-5;Q08499-8;Q08499-4;D6RHE0;Q08499-6 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 SGNQVSEFISNTFLDKQHEVEIPS(0.959)PT(0.041)QKEK;SGNQVSEFISNTFLDKQHEVEIPS(0.97)PT(0.03)QKEK ; 225.45 2.88E-39 238910000 56727 64795 38389 56550 172701 166622 363700 704760 74316 120944 TRUE FALSE FALSE 69345.72544 72372.21161 52590.6886 59639.18331 155506.2821 175346.0703 285992.5238 531916.505 89230.53953 90794.88661 0.763762454 0.797095677 0.579225225 0.65685619 1.712720703 1.931232879 3.149874784 5.858441206 0.982770538 1 16.47032343 -6.279045188 1.707899323 3.095455604 0.72046596 0.301672523 1.307219457 0.381457878 2.200807262 0.546383486 0.491593173 5.26E-07 6.279045188 -2.374989644 SGNTPNS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SGNTPNSPR 9 0 Q96EA4-2;Q96EA4-3;Q96EA4 Q96EA4-2 SPDL1 Protein Spindly 1 0 SGNTPNS(1)PR;SGNTPNS(1)PR;SGNTPNS(1)PR;SGNTPNS(1)PR ;;; 130.99 0.00023549 830788000 723312 859290 399805 956850 446342 737412 773050 1042490 706279 1065780 TRUE FALSE FALSE 884210.259 959776.4907 547709.5068 1009120.293 401902.6233 776021.7521 607881.5523 786817.6929 848022.7169 800100.6602 1.105123771 1.199569677 0.68455075 1.26124167 0.502315075 0.969905151 0.759756344 0.98339838 1.059895035 1 19.60982199 -4.734316292 24.97030339 0.897850071 1.152346986 0.196690168 0.201675893 326.3841544 300473.8816 0.048233217 0.127542256 1.84E-05 4.734316292 0.254496915 SGNTPNS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SGNTPNSPR 9 0 Q96EA4-2;Q96EA4-3;Q96EA4 Q96EA4-2 SPDL1 Protein Spindly 1 0 SGNTPNS(1)PR;S(0.001)GNT(0.032)PNS(0.967)PR;SGNT(0.001)PNS(0.999)PR ;; 103.46 0.0013649 2031809000 1450430 622426 1017491 444446 653251 1989750 1033939 866972 1734890 1762130 TRUE FALSE FALSE 1348762.347 573102.6969 1411490.765 1034692.749 571314.1683 1744274.875 775236.5263 669581.4015 1885271.662 1320881.178 1.021108007 0.43387907 1.068597833 0.78333522 0.432525028 1.320538822 0.586908602 0.506920238 1.427283311 1 20.33306926 -7.765289711 24.99992898 1.21364164 0.769574101 0.265022441 0.29603529 133.8921879 869291.6852 0.239252594 0.070905471 1.72E-08 7.765289711 -0.444067539 SGPEAEGLGSETSPTVDDEEEMLYGDSGSLFS(ph)PSKEEARR ddPTM_HeLa_A485_30min_R1 1 SGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARR 40 2 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 1 0 SGPEAEGLGSETSPTVDDEEEMLYGDS(0.117)GS(0.117)LFS(0.613)PS(0.153)KEEARR 125.57 2.15E-07 104810000 17059 21087 15693 22239 36152 30081 52407 64272 19199 36389 TRUE FALSE FALSE 20853.7157 23552.94122 21498.49374 23453.86026 32552.57994 31655.99465 41209.81632 48509.19123 23052.0632 27317.89199 0.763372068 0.86218004 0.786974842 0.858553078 1.191621226 1.158800784 1.508528416 1.775729666 0.843844877 1 14.73755854 -5.881142555 1.789898436 1.327862237 0.800902005 0.411401134 0.246325815 0.313012791 2.060228986 0.089337656 0.107671632 1.31E-06 5.881142555 -0.526960232 SGPFGQIFRPDNFVFGQS(ph)GAGNNWAK ddPTM_HeLa_A486_30min_R1 1 SGPFGQIFRPDNFVFGQSGAGNNWAK 26 1 Q5JP53;P07437;Q5ST81;M0R1I1;P68371;M0QY85;M0QZL7;M0R278;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4A;TUBB4B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 1 0 SGPFGQIFRPDNFVFGQS(1)GAGNNWAK 50.464 0.019488 57771000 34498 37982 27878 17115 38968 33258 43634 41097 34827 36773 TRUE FALSE FALSE 32079.86835 34972.16799 38673.1082 39844.58494 34080.27008 29154.9661 32716.31169 31740.11024 37845.8324 27564.80145 1.163798274 1.268725554 1.402988818 1.445487827 1.236369148 1.057688232 1.186887261 1.151472478 1.372976782 1 14.75053959 -5.996676255 24.91723283 1.16330507 1.324785817 0.316036396 0.114989672 124.8009634 935582.3446 0.036393176 0.041058302 1.01E-06 5.996676255 0.161480746 SGPFGQIFRPDNFVFGQSGAGNNWAK ddPTM_HeLa_A485_30min_R1 2 SGPFGQIFRPDNFVFGQSGAGNNWAK 26 1 Q5JP53;P07437;Q5ST81;M0R1I1;P68371;M0QY85;M0QZL7;M0R278;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4A;TUBB4B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ; ; 314.87 4.68E-100 442710000 103655 104249 97529 119576 141118 112571 176406 169518 97892 169208 FALSE FALSE TRUE 126712.6971 116440.0137 133609.0356 126108.1341 127067.7964 118465.0435 138715.417 127943.4447 117538.0265 127027.5596 0.997521306 0.916651584 1.051811402 0.992761999 1.000316756 0.932593241 1.092010406 1.007210129 0.925295478 1 16.95478201 -4.753178387 24.99986046 1.001103243 0.957086474 0.107677957 0.049653337 401.545353 1215150.427 0.012460212 0.03175158 1.77E-05 4.753178387 -0.044016769 SGPFGQIFRPDNFVFGQSGAGNNWAK ddPTM_HeLa_A486_30min_R1 2 SGPFGQIFRPDNFVFGQSGAGNNWAK 26 1 Q5JP53;P07437;Q5ST81;M0R1I1;P68371;M0QY85;M0QZL7;M0R278;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4A;TUBB4B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ; ; 328.59 2.79E-116 617430000 154559 151749 107448 55397 164545 160576 198251 199107 128538 185869 FALSE FALSE TRUE 143725.2122 139723.8566 149054.7432 128967.0156 143906.2318 140765.7657 148646.5029 153774.6826 139679.7773 139326.1926 1.031573529 1.002854194 1.069825712 0.925648029 1.032872779 1.010332394 1.066895608 1.103702611 1.00253782 1 17.08810698 -6.748795301 24.57647625 1.051925892 1.011387291 0.0927352 0.044440645 341.8834092 664524.6278 0.016574267 0.012744557 1.78E-07 6.748795301 -0.040538601 SGPFGQLFRPDNFIFGQTGAGNNWAK ddPTM_HeLa_A485_30min_R1 2 SGPFGQLFRPDNFIFGQTGAGNNWAK 26 1 Q9BUF5;K7ES63;K7EL29;K7EN98 Q9BUF5 TUBB6 Tubulin beta-6 chain 0 0 ; ; 258.1 1.39E-60 53547000 29681 31579 28378 35840 43837 36998 53364 53182 28696 52083 FALSE FALSE TRUE 36283.43605 35271.88935 38876.20311 37797.84845 39472.43436 38935.15807 41962.34546 40139.03111 34455.02398 39099.66662 0.927973029 0.902102048 0.994284772 0.966705134 1.009533783 0.995792584 1.073214917 1.026582439 0.881210173 1 15.25486869 -4.768362172 24.15362705 0.996921455 0.91503753 0.311433336 0.046383211 108.1731026 377424.2029 0.012336199 0.026653104 1.70E-05 4.768362172 -0.081883925 SGPFGQLFRPDNFIFGQTGAGNNWAK ddPTM_HeLa_A486_30min_R1 2 SGPFGQLFRPDNFIFGQTGAGNNWAK 26 1 Q9BUF5;K7ES63;K7EL29;K7EN98 Q9BUF5 TUBB6 Tubulin beta-6 chain 0 0 ; ; 288.46 6.70E-85 55399000 27127 28470 18631.2 12853.5 28728 27569 38969 35643 25456 36684 FALSE FALSE TRUE 25225.53738 26213.93351 25845.6996 29923.59758 25124.66636 24167.81708 29218.54403 27527.86698 27662.54658 27498.08763 0.917356062 0.953300239 0.939908984 1.088206496 0.91368777 0.878890831 1.062566402 1.001082961 1.005980741 1 14.74704367 -6.778431176 24.99991928 1.017497754 0.953143371 0.276027493 0.054320898 383.3525279 564019.1216 0.023711033 0.016031822 1.67E-07 6.778431176 -0.064354382 SGPKPFSAPKPQT(ph)SPSPK ddPTM_HeLa_A485_30min_R1 1 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFSAPKPQT(0.696)S(0.303)PSPK 140.17 9.91E-07 1191800000 154130 601180 73734 2577900 268960 312480 513690 405200 157920 1216200 TRUE FALSE FALSE 188415.6868 671482.7714 101011.2749 2718724.149 242181.398 328840.9696 403935.935 305824.0647 189613.0955 913023.7225 0.206364503 0.735449425 0.11063379 2.977714688 0.265252032 0.36016695 0.442415597 0.334957414 0.207675979 1 19.80029282 SGPKPFSAPKPQT(ph)SPSPK ddPTM_HeLa_A486_30min_R1 3 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFSAPKPQT(0.642)S(0.358)PSPK;SGPKPFSAPKPQT(0.487)S(0.487)PS(0.026)PK;SGPKPFSAPKPQT(0.828)S(0.16)PS(0.012)PK ;; 202.43 3.00E-25 27071600000 1501860 3510980 391770 3372120 1137370 2136610 2574180 2283200 1122780 4800780 TRUE FALSE FALSE 1396587.37 3232757.158 543473.836 7850465.778 994710.449 1873016.782 1930092.937 1763365.202 1220103.474 3598633.44 0.388088254 0.898329105 0.151022282 2.18151304 0.276413385 0.520480014 0.536340522 0.490009675 0.339046334 1 21.77901772 SGPKPFSAPKPQTS(ph)PS(ph)PK ddPTM_HeLa_A485_30min_R1 1 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 2 0 SGPKPFSAPKPQT(0.124)S(0.877)PS(0.999)PK 115.5 4.45E-05 13220000000 3394300 1939200 955710 7787700 3047200 2799200 6809500 5717800 1918900 9902900 TRUE FALSE FALSE 4149350.325 2165972.571 1309266.899 8213122.332 2743810.069 2945761.784 5354594.697 4315500.585 2304005.629 7434289.279 0.558136786 0.291348976 0.176111912 1.104762274 0.369074967 0.396239865 0.720256435 0.580485965 0.309916058 1 22.8257634 -11.44035276 2.132984472 5.307768756 0.504625885 0.260443508 0.2523332 10693157.81 932305.9067 222220673.4 0.065824684 3.63E-12 11.44035276 -4.803142871 SGPKPFSAPKPQTS(ph)PS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 2 0 SGPKPFSAPKPQT(0.156)S(0.844)PS(1)PK;SGPKPFSAPKPQT(0.204)S(0.797)PS(0.999)PK ; 112.85 5.72E-05 28617000000 10485800 7646200 2123310 10233400 4765600 11128700 18143800 14574000 5439800 25569000 TRUE FALSE FALSE 9750799.569 7040287.265 2945512.496 23823872.37 4167854.011 9755754.142 13604029.33 11255818.35 5911326.244 19166355.97 0.508745616 0.36732529 0.153681404 1.243004794 0.217456778 0.509004119 0.709786949 0.587269607 0.308422021 1 24.19207273 -11.12732906 2.414464624 1.979203467 0.51769467 0.200048663 0.292749888 26669304.2 6054734.905 143456295.6 0.074384385 7.46E-12 11.12732906 -1.461508797 SGPKPFSAPKPQTS(ph)PS(ph)PKR ddPTM_HeLa_A485_30min_R1 3 SGPKPFSAPKPQTSPSPKR 19 3 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 2 0 SGPKPFSAPKPQT(0.484)S(0.533)PS(0.983)PKR;SGPKPFSAPKPQT(0.438)S(0.576)PS(0.986)PKR;SGPKPFSAPKPQT(0.462)S(0.538)PS(0.999)PKR ;; 75.539 0.0018777 20003580000 1753150 1154240 828600 3404470 2036040 1761360 3623240 3331580 1452920 4803590 TRUE FALSE FALSE 2143132.169 1289218.327 1135133.621 3590447.576 1833324.709 1853582.086 2849105.175 2514504.781 1744507.717 3606143.417 0.594300315 0.357506116 0.314777725 0.995647472 0.508389295 0.514006758 0.790069846 0.697283633 0.483759938 1 21.78202534 -14 0.100393457 2.247378376 0.319616289 0.309074173 0.190469705 236.8237521 1.613415702 62.59950718 3.261999558 1.00E-14 14 -1.927762086 SGPKPFSAPKPQTS(ph)PS(ph)PKR ddPTM_HeLa_A486_30min_R1 2 SGPKPFSAPKPQTSPSPKR 19 3 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 2 0 S(0.001)GPKPFS(0.009)APKPQT(0.476)S(0.535)PS(0.98)PKR;SGPKPFSAPKPQT(0.03)S(0.97)PS(1)PKR ; 85.573 0.00041854 12556700000 1886970 1378080 495233 1527980 1343330 2266090 3612060 3046580 1017450 3694040 TRUE FALSE FALSE 1754703.147 1268875.922 687000.4804 3557214.66 1174837.025 1986522.856 2708284.384 2352940.24 1105643.385 2769028.34 0.633689126 0.458238691 0.248101643 1.284643645 0.424277718 0.717407918 0.978063079 0.84973498 0.399289299 1 21.40094839 -5.215308331 24.99995656 0.788739871 0.447832768 0.280832058 0.263486564 583.9158173 316442.6095 0.06946905 0.120323322 6.09E-06 5.215308331 -0.340907103 SGPKPFSAPKPQTS(ph)PSPK ddPTM_HeLa_A485_30min_R1 1 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFSAPKPQT(0.117)S(0.866)PS(0.016)PK 169.05 1.38E-12 1010600000 179230 957840 86628 4246800 295230 391410 594550 517420 209580 1775500 TRUE FALSE FALSE 219099.0952 1069851.056 118675.3021 4478791.931 265835.8646 411903.6224 467519.5355 390521.9337 251640.7836 1332900.526 0.164377679 0.802648836 0.089035378 3.360184683 0.199441638 0.309028029 0.350753508 0.292986555 0.188791871 1 20.34613769 SGPKPFSAPKPQTSPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFSAPKPQT(0.003)S(0.009)PS(0.988)PK;SGPKPFSAPKPQTS(0.005)PS(0.995)PK ; 173.47 1.16E-12 1.04E+11 6750600 4020290 1888240 12757400 6240700 5496500 12359900 10851100 4168550 16575200 TRUE FALSE FALSE 8252247.681 4490427.944 2586778.552 13454304.46 5619353.996 5784288.241 9719106.394 8189850.711 5005139.749 12443307.68 0.663187626 0.360870924 0.207885123 1.081248234 0.451596484 0.464851339 0.781070969 0.658173126 0.402235473 1 23.5688667 -14 0.233288058 3.332004532 0.519719257 0.227002603 0.236175828 255.3759626 2.555244336 282.3985887 0.401308419 1.00E-14 14 -2.812285274 SGPKPFSAPKPQTSPS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFSAPKPQTSPS(1)PK;SGPKPFSAPKPQT(0.015)S(0.059)PS(0.926)PK ; 172.98 1.28E-12 99842000000 7785200 5704900 1682500 5717600 4174200 7643400 11898600 9951100 4145900 15386300 TRUE FALSE FALSE 7239497.683 5252822.947 2334009.059 13310861.75 3650632.913 6700435.02 8921444.429 7685451.761 4505269.95 11533470.33 0.627694655 0.455441666 0.202368324 1.154107252 0.316525105 0.580955673 0.773526456 0.666360734 0.390625702 1 23.45932334 -11.64810814 2.050395264 9.999210986 0.578002999 0.203044591 0.252985047 10789223.31 412726.0712 453057879.3 0.070092765 2.25E-12 11.64810814 -9.421207987 SGPKPFSAPKPQTSPS(ph)PKR ddPTM_HeLa_A485_30min_R1 1 SGPKPFSAPKPQTSPSPKR 19 3 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFS(0.001)APKPQT(0.128)S(0.128)PS(0.744)PKR 87.102 0.00070499 11132000000 1478700 1093700 606510 2016900 1922100 1817200 3595700 4245700 1258300 2896800 TRUE FALSE FALSE 1807631.714 1221598.701 830883.288 2127078.14 1730728.975 1912345.782 2827449.321 3204435.418 1510829.268 2174681.072 0.831216925 0.561736945 0.382071329 0.978110385 0.795854159 0.879368385 1.300167348 1.473519708 0.694736018 1 21.05237241 -6.034977244 1.208315899 1.137039537 0.620866435 0.383290002 0.241398247 0.443986708 1.354357688 0.111807075 0.123866979 9.23E-07 6.034977244 -0.516173103 SGPPS(ph)PPSTATSFGGPRPR ddPTM_HeLa_A485_30min_R1 4 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 SGPPS(1)PPSTATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR ;;; 212.74 1.50E-26 6812700000 462876 557826 546885 636952 798110 540235 820130 821250 533550 906580 TRUE FALSE FALSE 565841.1693 623058.8983 749200.5193 671747.0749 718647.3661 568520.8692 644902.5257 619837.1498 640628.591 680586.2904 0.831402538 0.915473772 1.100816355 0.987012352 1.055923953 0.835339879 0.947569081 0.910739988 0.941289297 1 19.37641856 -6.253451986 24.99542932 0.922695237 0.98195496 0.093990667 0.078374209 1437.009566 4496921.978 0.027038864 0.026574863 5.58E-07 6.253451986 0.059259723 SGPPS(ph)PPSTATSFGGPRPR ddPTM_HeLa_A486_30min_R1 3 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 SGPPS(1)PPSTATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR;SGPPS(1)PPSTATSFGGPRPR ;; 291.02 3.50E-79 4597300000 753780 781520 607040 301516 883940 686560 863480 877900 700600 908500 TRUE FALSE FALSE 700943.9145 719589.509 842102.1451 701944.4858 773068.0028 601859.2076 647428.171 678021.3344 761328.5721 681005.6867 1.029277623 1.056657122 1.236556701 1.030746879 1.135185826 0.883780003 0.950694221 0.995617728 1.117947452 1 19.37730732 -6.237415101 24.9789473 0.986901869 1.099401846 0.323654627 0.078048425 954.2967975 992218.6062 0.02634572 0.026333218 5.79E-07 6.237415101 0.112499977 SGPPSPPSTATS(ph)FGGPRPR ddPTM_HeLa_A486_30min_R1 1 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 SGPPS(0.124)PPS(0.335)T(0.037)AT(0.049)S(0.455)FGGPRPR 80.638 0.031876 103170000 75951 72726 56624 29304 86554 68680 85851 82625 67097 88250 TRUE FALSE FALSE 70627.22711 66962.9269 78550.32924 68221.19294 75697.59024 60206.95989 64370.17176 63813.09119 72913.02198 66151.62559 1.067656713 1.012264269 1.187428556 1.031285208 1.144304309 0.910135758 0.973070143 0.964648875 1.102210586 1 16.01348899 -6.254762813 24.99084504 0.986744694 1.086655287 0.363058104 0.065185664 597.9511817 2238174.318 0.021369406 0.020901891 5.56E-07 6.254762813 0.099910594 SGPS(ph)PLS(ph)SPNGK ddPTM_HeLa_A485_30min_R1 3 SGPSPLSSPNGK 12 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 S(0.003)GPS(0.997)PLS(0.945)S(0.055)PNGK;S(0.002)GPS(0.998)PLS(0.937)S(0.064)PNGK;SGPS(1)PLS(0.627)S(0.373)PNGK ;; 179.46 1.82E-12 2764310000 6010800 5202200 4006790 8474100 7520800 5676400 9126100 7261000 4861630 11101800 TRUE FALSE FALSE 7347881.723 5810552.037 5489068.357 8937018.625 6772002.745 5973607.527 7176234.182 5480228.365 5837314.547 8334325.573 0.881640831 0.697183232 0.658609783 1.072314556 0.812543581 0.716747561 0.861045578 0.65754911 0.700394351 1 22.99063403 -9.535371942 15.5786283 1.000000297 0.783825857 0.218151556 0.122545188 0 0 0.121076883 0.029365457 2.91E-10 9.535371942 -0.21617444 SGPS(ph)PLS(ph)SPNGK ddPTM_HeLa_A486_30min_R1 2 SGPSPLSSPNGK 12 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 S(0.007)GPS(0.993)PLS(0.751)S(0.249)PNGK;SGPS(1)PLS(0.899)S(0.101)PNGK ; 121.56 0.00018494 1839650000 1894060 1924130 1005610 904370 1702420 2019340 2526600 2284260 1513810 2473500 TRUE FALSE FALSE 1761296.175 1771654.931 1395009.123 2105419.064 1488886.609 1770214.362 1894417.956 1764183.863 1645028.27 1854119.5 0.949936708 0.955523595 0.75238361 1.135535797 0.803015452 0.954746639 1.021734552 0.951494153 0.887228827 1 20.8223028 -6.501149365 24.75756073 0.964953444 0.919519535 0.046000876 0.100531967 2528.930564 2881364.622 0.034354445 0.030007377 3.15E-07 6.501149365 -0.045433909 SGPS(ph)PLSS(ph)PNGK ddPTM_HeLa_A486_30min_R1 1 SGPSPLSSPNGK 12 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 SGPS(1)PLS(0.146)S(0.854)PNGK 125.61 8.65E-05 1303400000 2090800 2130100 1132700 968890 2095600 2354900 3132500 2512400 1668600 2928800 TRUE FALSE FALSE 1944245.717 1961303.118 1571311.775 2255624.885 1832750.307 2064376.381 2348715.368 1940381.365 1813235.591 2195409.417 0.885595963 0.89336554 0.71572608 1.027427899 0.834810261 0.940314989 1.069830233 0.883835767 0.825921387 1 21.06605858 -5.272752645 24.99901127 0.936467197 0.837742821 0.245359005 0.087009917 1133.384561 2504446.896 0.02476392 0.037085697 5.34E-06 5.272752645 -0.098724376 SGPS(ph)PLSSPNGK ddPTM_HeLa_A485_30min_R1 4 SGPSPLSSPNGK 12 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 SGPS(1)PLSSPNGK;SGPS(1)PLSSPNGK;SGPS(0.938)PLS(0.057)S(0.006)PNGK;S(0.052)GPS(0.945)PLS(0.003)SPNGK ;;; 209.11 2.06E-17 1510270000 2016290 2033850 1629600 2424580 2899320 2363390 3609930 3671060 2091180 3577850 TRUE FALSE FALSE 2464806.754 2271691.065 2232456.853 2557028.666 2610653.521 2487133.446 2838638.965 2770726.779 2510860.645 2685957.84 0.917663977 0.845765719 0.831158561 0.951998809 0.9719637 0.925976353 1.0568442 1.031560041 0.934810147 1 21.35700523 -5.445868351 3.443990416 0.988038819 0.863368725 0.617829458 0.042737044 0.165659707 3.77259815 0.013220538 0.019917819 3.58E-06 5.445868351 -0.124670094 SGPS(ph)PLSSPNGK ddPTM_HeLa_A486_30min_R1 3 SGPSPLSSPNGK 12 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;O75179-6 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 SGPS(1)PLSSPNGK;SGPS(1)PLSSPNGK;SGPS(1)PLSSPNGK ;; 181.76 7.57E-13 1222350000 1234460 1140040 576100 451430 1123960 1247700 1506060 1485260 944950 1646640 TRUE FALSE FALSE 1147930.729 1049699.078 799181.3485 1050951.854 982982.4563 1093771.46 1129227.859 1147098.721 1026859.027 1234310.626 0.930017699 0.850433478 0.647471821 0.851448437 0.79638175 0.886139547 0.914865217 0.929343633 0.83192918 1 20.23527408 -6.389224546 3.47110359 0.912307877 0.809639742 0.289915593 0.076783379 0.349026923 7.727863307 0.029384832 0.02539084 4.08E-07 6.389224546 -0.102668134 SGQGFHGNSEVNAILS(ph)PR ddPTM_HeLa_A485_30min_R1 5 SGQGFHGNSEVNAILSPR 18 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 0 SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR ;;;; 192.51 2.06E-18 2518560000 626986 913484 913680 507537 1059663 723353 974993 921882 720182 813269 TRUE FALSE FALSE 766456.8726 1020308.008 1251688.253 535262.4612 954159.231 761226.6446 766677.7806 695788.994 864715.9215 610536.0054 1.255383574 1.671167627 2.050146498 0.876709083 1.562822213 1.246816957 1.2557454 1.1396363 1.416322565 1 19.21971685 -5.263848753 24.9999946 1.237465778 1.660126059 0.387671686 0.255035031 224.6647847 2331159.675 0.069324537 0.108508312 5.45E-06 5.263848753 0.422660281 SGQGFHGNSEVNAILS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SGQGFHGNSEVNAILSPR 18 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 0 SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR;SGQGFHGNSEVNAILS(1)PR ;;; 212.9 4.37E-26 1540907000 685531 707746 518552 58309.3 796204 586075 666270 655823 621359 462705 TRUE FALSE FALSE 637478.817 651661.6294 719349.2217 135746.9972 696336.67 513771.0253 499562.1989 506506.4194 675218.8984 346840.6563 1.837958744 1.87885018 2.074004903 0.391381445 2.007655842 1.481288355 1.440321917 1.460343274 1.946769752 1 18.40391349 -1 0.037191431 5.25E-09 4.017084541 0.112547673 0.471227847 2308.808212 6.567175023 202.8980478 606.6158052 0.1 1 4.017084536 SGQGS(ph)DRGSGSRPGIEGDTPR ddPTM_HeLa_A485_30min_R1 1 SGQGSDRGSGSRPGIEGDTPR 21 2 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 S(0.115)GQGS(0.427)DRGS(0.427)GS(0.032)RPGIEGDTPR 72.302 0.0038111 276220000 102920 137460 127930 112240 169920 124670 187380 204610 128370 166720 TRUE FALSE FALSE 125814.1989 153534.7513 175256.6306 118371.387 153002.1682 131197.5284 147344.7322 154429.0767 154132.6815 125159.7723 1.00522873 1.226710056 1.400263259 0.945762243 1.22245483 1.04824039 1.177253119 1.233855526 1.231487392 1 16.93341141 -11.36795015 2.101802121 0.000192059 1.168479594 0.134129649 0.126119028 2859607.61 236374.2119 13703139.7 0.032062835 4.29E-12 11.36795015 1.168287536 SGQGSDRGS(ph)GSRPGIEGDTPR ddPTM_HeLa_A485_30min_R1 3 SGQGSDRGSGSRPGIEGDTPR 21 2 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 SGQGSDRGS(0.956)GS(0.044)RPGIEGDTPR;S(0.261)GQGS(0.156)DRGS(0.556)GS(0.027)RPGIEGDTPR;S(0.054)GQGS(0.229)DRGS(0.679)GS(0.038)RPGIEGDTPR ;; 152.17 4.73E-10 934310000 417210 553520 548690 564900 659250 540390 697640 778550 499630 708730 TRUE FALSE FALSE 510016.9251 618249.349 751673.2639 595759.0566 593612.7552 568683.9848 548583.5148 587609.3918 599901.1581 532056.6542 0.958576349 1.161999092 1.412769219 1.119728608 1.115694636 1.068841035 1.03106222 1.10441132 1.127513684 1 19.02122035 -5.665570127 3.535144687 1.076247559 1.186826014 0.143331863 0.108647325 0.443445596 10.78929707 0.034792579 0.045440412 2.16E-06 5.665570127 0.110578455 SGQGSDRGS(ph)GSRPGIEGDTPR ddPTM_HeLa_A486_30min_R1 4 SGQGSDRGSGSRPGIEGDTPR 21 2 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 SGQGSDRGS(0.955)GS(0.045)RPGIEGDTPR;S(0.002)GQGS(0.004)DRGS(0.804)GS(0.19)RPGIEGDTPR;S(0.003)GQGS(0.004)DRGS(0.617)GS(0.375)RPGIEGDTPR;S(0.001)GQGS(0.005)DRGS(0.949)GS(0.044)RPGIEGDTPR ;;; 154.77 3.14E-10 1244830000 766339 899146 845265 316698 1116419 762483 936051 960582 815623 842531 TRUE FALSE FALSE 712622.5935 827894.3963 1172574.245 737288.949 976387.3188 668415.5998 701841.1393 741878.448 886321.8583 631555.7536 1.128360544 1.310880934 1.85664407 1.167417041 1.546003363 1.058363566 1.111289281 1.174684014 1.40339448 1 19.26855057 -6.266652606 24.90798947 1.158072957 1.409047772 0.254872317 0.215286573 630.3039925 3011485.553 0.07485244 0.06801482 5.41E-07 6.266652606 0.250974815 SGS(ph)AAQAEGLCK ddPTM_HeLa_A485_30min_R1 5 SGSAAQAEGLCK 12 0 F8WF93;H7BZZ2;F8WE30;H7C0X4;Q92685 F8WF93 ALG3 "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" 1 0 S(0.002)GS(0.998)AAQAEGLCK;S(0.004)GS(0.996)AAQAEGLCK;SGS(1)AAQAEGLCK;S(0.003)GS(0.997)AAQAEGLCK;S(0.002)GS(0.998)AAQAEGLCK ;;;; 231.92 8.48E-24 3450530000 2141520 1552050 856679 2828470 1559600 1791770 2690950 3417860 1762340 7449240 TRUE FALSE FALSE 2617893.736 1733548.746 1173600.211 2982982.154 1404320.748 1885584.307 2116006.549 2579624.476 2116025.473 5592281.561 0.468126239 0.309989532 0.209860716 0.533410581 0.251117676 0.337176211 0.378379831 0.461283011 0.378383214 1 22.41500557 -10.23486762 0.462099841 1.289643571 0.345674757 0.80578667 0.093148357 9.671170619 1.160423521 3.591061104 0.048387744 5.82E-11 10.23486762 -0.943968815 SGS(ph)AAQAEGLCK ddPTM_HeLa_A486_30min_R1 4 SGSAAQAEGLCK 12 0 F8WF93;H7BZZ2;F8WE30;H7C0X4;Q92685 F8WF93 ALG3 "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" 1 0 SGS(1)AAQAEGLCK;SGS(1)AAQAEGLCK;S(0.003)GS(0.997)AAQAEGLCK;S(0.009)GS(0.991)AAQAEGLCK ;;; 246.85 4.13E-28 2567650000 2473780 2093230 1200670 729700 2207200 2279630 2539190 2018200 1980720 3126720 TRUE FALSE FALSE 2300380.797 1927354.831 1665601.579 1698778.477 1930352.395 1998392.428 1903857.805 1558699.917 2152410.404 2343768.96 0.981487867 0.822331409 0.710650925 0.724806287 0.823610359 0.852640538 0.812306092 0.665039918 0.918354343 1 21.16039893 -7.992994711 24.49916815 1.000000019 0.797136227 0.391695827 0.082941437 102.2504675 357591.8404 0.081904574 0.02114767 1.02E-08 7.992994711 -0.202863792 SGS(ph)AHGS(ph)GKS(ph)ARHT(ph)PAR ddPTM_HeLa_A486_30min_R1 1 SGSAHGSGKSARHTPAR 17 2 P62995 P62995 TRA2B Transformer-2 protein homolog beta 4 0 S(0.422)GS(0.578)AHGS(1)GKS(1)ARHT(1)PAR 77.241 0.0091878 798880000 259780 170940 392060 486600 1134600 906840 1472200 1614100 409180 680020 TRUE FALSE FALSE 241570.7635 157394.0918 543876.1317 1132829.391 992287.8883 794963.3009 1103839.989 1246604.666 444648.0519 509738.5658 0.473911098 0.308774149 1.066970734 2.222373325 1.946660415 1.559551021 2.165502206 2.445576515 0.872306083 1 18.95939798 -5.001060729 3.727680669 1.820229581 0.41094795 0.55242956 0.485996675 0.145602866 4.461339016 0.128340572 0.268696998 9.98E-06 5.001060729 -1.409281631 SGS(ph)DAGEARPPTPASPR ddPTM_HeLa_A486_30min_R1 1 SGSDAGEARPPTPASPR 17 1 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 S(0.286)GS(0.714)DAGEARPPTPASPR 60.032 0.012366 879920000 169830 189060 139720 70203 184610 182840 220490 209510 152340 192840 TRUE FALSE FALSE 157925.794 174078.1971 193823.3258 163436.1319 161454.4924 160283.0598 165321.0699 161809.1466 165544.9539 144551.6088 1.09252187 1.204263297 1.340859001 1.130642081 1.116933209 1.108829304 1.143681978 1.119386687 1.145230795 1 17.14122514 -5.493743514 24.88860624 1.114620852 1.215724756 0.328067887 0.067786396 793.4702408 677817.1029 0.018902483 0.027976768 3.21E-06 5.493743514 0.101103904 SGS(ph)ESEEAELSLSLAR ddPTM_HeLa_A485_30min_R1 1 SGSESEEAELSLSLAR 16 0 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 0 S(0.005)GS(0.972)ES(0.024)EEAELSLSLAR 120.29 6.49E-06 0 46648 57256 55639 52775 85254 58290 72184 72765 58513 75008 TRUE FALSE FALSE 57024.68667 63951.59114 76222.18143 55657.96462 76765.81242 61341.97427 56761.29871 54919.26966 70256.02239 56309.88602 1.012694052 1.135708055 1.353619885 0.988422612 1.363274157 1.089364206 1.00801658 0.975304223 1.247667636 1 15.78110061 -6.507165138 24.84882623 1.054689287 1.174577259 0.140160167 0.133695629 1245.34372 1969338.699 0.046440032 0.039745369 3.11E-07 6.507165138 0.119887972 SGS(ph)FDSR ddPTM_HeLa_A485_30min_R1 1 SGSFDSR 7 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.18)GS(0.82)FDSR 120.87 0.0019897 1707600000 3538200 4083800 2975800 5198600 4269700 3744500 5287800 5460100 3969300 6412200 TRUE FALSE FALSE 4325260.383 4561364.886 4076672.253 5482586.354 3844593.676 3940556.23 4158018.333 4121001.914 4765902.101 4813756.548 0.8985208 0.947568669 0.846879607 1.138941344 0.798668075 0.818603141 0.863778276 0.856088561 0.990058815 1 22.19873175 -1.052331457 22.27728133 0.909662487 0.011537694 0 0.099137796 0 0 0.022413193 0 0.088647919 1.052331457 -0.898124793 SGS(ph)GCQVSGSPLAK ddPTM_HeLa_A485_30min_R1 1 SGSGCQVSGSPLAK 14 0 Q3C1V9 Q3C1V9 Putative uncharacterized protein ENSP00000334305 1 0 S(0.219)GS(0.26)GCQVS(0.26)GS(0.26)PLAK 68.173 0.0084016 737190000 150710 678650 970990 26830 495010 439500 189590 322190 620940 45090 TRUE FALSE FALSE 184234.9196 758012.214 1330199.607 28295.65496 445725.0663 462511.5404 149082.5477 243172.3973 745556.9624 33849.89282 5.442703188 22.39334163 39.2970109 0.835915644 13.16769506 13.66360428 4.404225103 7.183845415 22.02538621 1 15.04686365 -5.288113798 24.97265204 9.344225049 22.37926048 0.288382273 9.686247217 935.9274167 876215.3888 2.725245577 4.043472446 5.15E-06 5.288113798 13.03503543 SGS(ph)GGGSAKEPQEER ddPTM_HeLa_A485_30min_R1 2 SGSGGGSAKEPQEER 15 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 S(0.004)GS(0.996)GGGSAKEPQEER;S(0.007)GS(0.993)GGGSAKEPQEER ; 204.78 9.49E-26 4045020000 771920 748180 615320 1097940 1374320 1036310 1683280 1973730 802590 1552720 TRUE FALSE FALSE 943630.9409 835673.1427 842952.4736 1157917.682 1237487.875 1090569.589 1323633.477 1489669.623 963662.4512 1165655.48 0.809528164 0.716912636 0.723157475 0.993361849 1.061624036 0.935584835 1.135527178 1.277967331 0.826712925 1 20.15271002 -5.342622656 3.940077058 1.051114805 0.745479344 0.56200225 0.114574444 0.161823504 4.727104976 0.033067612 0.051505532 4.54E-06 5.342622656 -0.305635461 SGS(ph)GGGSAKEPQEER ddPTM_HeLa_A486_30min_R1 7 SGSGGGSAKEPQEER 15 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 S(0.002)GS(0.996)GGGS(0.002)AKEPQEER;S(0.061)GS(0.939)GGGSAKEPQEER;S(0.009)GS(0.991)GGGSAKEPQEER;S(0.007)GS(0.993)GGGSAKEPQEER;S(0.12)GS(0.856)GGGS(0.024)AKEPQEER;S(0.012)GS(0.987)GGGS(0.002)AKEPQEER;S(0.25)GS(0.734)GGGS(0.015)AKEPQEER ;;;;;; 189.55 2.18E-18 8780150000 3684585 3152741 1989546 2232712 4256136 3786436 5612310 5509845 2569863 5209380 TRUE FALSE FALSE 3426314.619 2902906.321 2759951.493 5197866.371 3722291.736 3319304.024 4208050.677 4255373.573 2792620.794 3904917.341 0.877435889 0.743397636 0.706788711 1.331107913 0.95323189 0.850031828 1.077628618 1.089747414 0.715154906 1 21.89686058 SGS(ph)GNFGGGR ddPTM_HeLa_A485_30min_R1 3 SGSGNFGGGR 10 0 F8W6I7;P09651-2;P09651;F8VZ49;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.001)GS(0.999)GNFGGGR;S(0.071)GS(0.929)GNFGGGR;S(0.041)GS(0.959)GNFGGGR ;; 146.08 5.12E-06 1698950000 1070490 1320010 1133010 1297910 1641600 1208170 1614630 1812380 1257190 1749130 TRUE FALSE FALSE 1308616.807 1474373.687 1552157.547 1368811.537 1478156.54 1271427.913 1269651.11 1367890.963 1509496.501 1313104.081 0.996582697 1.122815554 1.182052184 1.04242425 1.125696402 0.968261337 0.966908205 1.041723183 1.149563483 1 20.32454984 -6.247437867 24.80846536 1.024249998 1.097555847 0.20700533 0.066950955 1169.218226 2071670.176 0.022898401 0.022775499 5.66E-07 6.247437867 0.07330585 SGS(ph)GNFGGGR ddPTM_HeLa_A486_30min_R1 4 SGSGNFGGGR 10 0 F8W6I7;P09651-2;P09651;F8VZ49;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.038)GS(0.962)GNFGGGR;S(0.001)GS(0.999)GNFGGGR;S(0.005)GS(0.995)GNFGGGR;S(0.023)GS(0.977)GNFGGGR ;;; 155.61 2.03E-06 2036380000 1408290 1371050 1065000 514272 1491880 1345130 1592910 1562170 1134670 1666340 TRUE FALSE FALSE 1309576.143 1262403.005 1477396.522 1197251.206 1304754.499 1179181.537 1194347.07 1206497.993 1233024.109 1249077.618 1.048434561 1.010668182 1.182790005 0.958508253 1.044574397 0.944041843 0.956183229 0.965911146 0.987147709 1 20.2524317 -5.321009905 24.99995028 0.97832539 1.073635736 0.474061315 0.048645373 216.2612993 90757.82501 0.013491855 0.020011648 4.78E-06 5.321009905 0.095310347 SGS(ph)GSESEPSSR ddPTM_HeLa_A485_30min_R1 4 SGSGSESEPSSR 12 0 I3L2N2;O14641;I3L0Z8 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 0 S(0.015)GS(0.983)GS(0.002)ESEPSSR;S(0.224)GS(0.673)GS(0.103)ESEPSSR;S(0.005)GS(0.994)GSESEPSSR;S(0.006)GS(0.909)GS(0.086)ESEPSSR ;;; 247.79 1.95E-41 886410000 689834 788804 558674 930770 779207 853960 1009970 1134880 782609 1251130 TRUE FALSE FALSE 843285.1934 881047.7661 765350.761 981615.6083 701626.4151 898672.0251 794181.6588 856548.9006 939671.4478 939246.3163 0.897831781 0.938036967 0.814856282 1.045109884 0.747010026 0.956801224 0.845552061 0.911953431 1.00045263 1 19.84114403 -7.720533169 4.380868308 1.002642719 0.892914947 0.234878194 0.076807738 0.270498301 10.84244382 0.057309683 0.018145581 1.90E-08 7.720533169 -0.109727772 SGS(ph)GSESEPSSR ddPTM_HeLa_A486_30min_R1 2 SGSGSESEPSSR 12 0 I3L2N2;O14641;I3L0Z8 I3L2N2 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 0 SGS(0.968)GS(0.031)ESEPSSR;S(0.025)GS(0.964)GS(0.011)ESEPSSR ; 240.94 3.27E-41 269940000 550220 342990 388760 275067 430510 709510 574290 537790 496870 704620 TRUE FALSE FALSE 511652.4193 315810.2233 539298.2834 640369.8771 376511.4215 621977.87 430596.5678 415346.9569 539939.0917 528178.5657 0.968711062 0.59792321 1.021052951 1.212411708 0.712848733 1.177590138 0.815248092 0.786376017 1.022266193 1 19.01066623 -4.792104751 24.99967406 0.962423459 0.783316485 0.153489439 0.173465901 324.6370471 264656.8075 0.044205177 0.092036521 1.61E-05 4.792104751 -0.179106974 SGS(ph)GSESTGAEER ddPTM_HeLa_A485_30min_R1 2 SGSGSESTGAEER 13 0 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.007)GS(0.99)GS(0.003)ESTGAEER;S(0.001)GS(0.996)GS(0.003)ESTGAEER ; 177.38 5.77E-13 324050000 207545 296150 229750 268466 331580 266210 370950 391550 257240 426740 TRUE FALSE FALSE 253712.6692 330782.1663 314744.0857 283131.6178 298566.731 280148.344 291693.5021 295521.7486 308865.7085 320361.5716 0.79195725 1.032527605 0.982465169 0.883787704 0.931967993 0.874475495 0.910513395 0.922463163 0.964115974 1 18.28934158 -7.947676505 2.696813206 0.999545348 0.919941066 0.169163214 0.060489627 0.47134665 7.561420505 0.057081713 0.015493337 1.13E-08 7.947676505 -0.079604282 SGS(ph)GSESTGAEER ddPTM_HeLa_A486_30min_R1 1 SGSGSESTGAEER 13 0 Q14669-3;Q14669;Q14669-2;G5E9G6;H7C1L9 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.001)GS(0.973)GS(0.025)ESTGAEER 234.47 9.07E-35 115130000 146830 158250 137080 67162 196220 164000 192220 193740 143240 182300 TRUE FALSE FALSE 136537.9752 145709.6937 190161.0471 156356.5302 171608.2579 143767.3474 144124.5229 149629.6313 155656.1585 136650.8934 0.999173674 1.066291555 1.391582904 1.144204229 1.255815119 1.052077625 1.054691406 1.094977337 1.139078967 1 17.06013537 -6.284180675 24.51817411 1.073259037 1.176293404 0.196236183 0.103989924 1145.001653 1234460.884 0.038156441 0.033676003 5.20E-07 6.284180675 0.103034367 SGS(ph)GSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSR ddPTM_HeLa_A485_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.282)GS(0.354)GS(0.282)VGNGS(0.039)S(0.043)RY(0.122)S(0.439)PS(0.439)QNS(0.999)PIHHIPSR 92.967 0.0065611 683980000 179250 191170 206330 196290 266270 165210 238510 190360 207090 296340 TRUE FALSE FALSE 219123.5441 213525.6685 282660.0531 207012.8257 239759.2239 173860.1401 187550.3901 143673.9115 248651.0635 222467.8917 0.984967055 0.959804432 1.270565612 0.930529004 1.077725069 0.781506665 0.843044758 0.645818641 1.11769416 1 17.7632376 -6.254037629 24.87554779 0.853316004 1.046204038 0.236625754 0.146852482 693.1912376 2329655.245 0.047266345 0.046370732 5.57E-07 6.254037629 0.192888034 SGS(ph)GSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A486_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.345)GS(0.385)GS(0.156)VGNGS(0.083)S(0.034)RY(0.029)S(0.894)PS(0.095)QNS(0.972)PIHHIPS(0.006)RR 74.561 0.0064054 898130000 178250 139850 140510 23784 205490 130720 172590 174240 125040 136910 TRUE FALSE FALSE 165755.5955 128767.7767 194919.235 55370.35398 179715.5281 114593.0955 129406.1565 134569.3556 135878.5679 102626.8449 1.615129021 1.254718264 1.899300668 0.5395309 1.751155152 1.116599615 1.260938663 1.311249077 1.324006093 1 16.64704863 -1 0.360917302 1.210041047 5.880733579 0.10661119 0.349556291 161.763012 2.259211097 0.268798117 519.4177076 0.1 1 4.670692532 SGS(ph)GSVGNGSSRYSPS(ph)QNS(ph)PIHHIPSR ddPTM_HeLa_A486_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.356)GS(0.456)GS(0.174)VGNGS(0.019)S(0.019)RY(0.101)S(0.385)PS(0.495)QNS(0.995)PIHHIPSR 89.186 0.0083172 623960000 186200 202540 179640 39137 190780 186020 238280 221540 164910 176120 TRUE FALSE FALSE 173148.3415 186489.9928 249201.4189 91112.91387 166850.5934 163070.7437 178659.8237 171100.1782 179204.5316 132018.4057 1.311546982 1.412606006 1.887626333 0.690153115 1.263843421 1.235212188 1.353294814 1.296032756 1.357420813 1 17.01037955 -14 0.050402485 1.90E-09 1.825725882 0.101167177 0.272805267 1463.041264 5.438679366 205.4797065 45.31813935 1.00E-14 14 1.82572588 SGS(ph)ISVK ddPTM_HeLa_A486_30min_R1 2 SGSISVK 7 0 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 SGS(0.718)IS(0.282)VK;S(0.001)GS(0.864)IS(0.135)VK ; 111.06 0.0029204 413010000 1002690 983130 608010 479290 1006730 1186900 1523260 1463320 789210 1406660 TRUE FALSE FALSE 932406.6089 905223.1983 843447.7551 1115811.342 880456.536 1040472.346 1142124.237 1130153.98 857619.3582 1054423.18 0.884281213 0.858500852 0.799913897 1.058219663 0.8350125 0.986769226 1.083174439 1.071822017 0.813354045 1 20.00802256 -5.253530406 24.99002426 0.980076411 0.848658872 0.314624771 0.088417393 746.2585424 2357951.373 0.024434185 0.041356095 5.58E-06 5.253530406 -0.131417539 SGS(ph)IVELIAGGGS(ph)SCSPVLSR ddPTM_HeLa_A485_30min_R1 3 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 0 S(0.152)GS(0.848)IVELIAGGGS(0.407)S(0.344)CS(0.247)PVLS(0.002)R;S(0.426)GS(0.574)IVELIAGGGS(0.397)S(0.342)CS(0.255)PVLS(0.006)R;S(0.438)GS(0.562)IVELIAGGGS(0.448)S(0.307)CS(0.241)PVLS(0.004)R ;; 77.959 0.0077809 264658000 194664 176234 179459 249087 266461 179579 281091 264878 184251 382160 TRUE FALSE FALSE 237966.3352 196843.0333 245848.352 262693.9921 239931.2072 188981.4788 221033.6115 199916.2552 221228.4856 286894.5451 0.829455768 0.686116333 0.856929336 0.915646521 0.836304528 0.658714088 0.770435044 0.696828359 0.771114298 1 18.13016101 SGS(ph)IVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_A485_30min_R1 1 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 0 S(0.099)GS(0.901)IVELIAGGGS(0.283)S(0.147)CS(0.57)PVLS(0.001)R 142.04 5.09E-09 112710000 107660 101820 99123 142300 157980 101840 159130 155370 111620 224820 TRUE FALSE FALSE 131608.5956 113726.9633 135792.7226 150073.4887 142250.9565 107172.1849 125130.5755 117265.2639 134021.1102 168776.5115 0.779780281 0.673831698 0.804571213 0.889184682 0.842836217 0.634994668 0.741398044 0.694796111 0.794074418 1 17.36475461 -8.033711271 22.48381596 1.000000002 0.7581208 0.494049875 0.073168013 1175.55832 784041.563 0.076270018 0.019692834 9.25E-09 8.033711271 -0.241879202 SGS(ph)IVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_A486_30min_R1 3 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 0 S(0.403)GS(0.597)IVELIAGGGS(0.112)S(0.063)CS(0.822)PVLS(0.003)R;S(0.07)GS(0.93)IVELIAGGGS(0.065)S(0.413)CS(0.521)PVLS(0.001)R;S(0.098)GS(0.902)IVELIAGGGS(0.001)S(0.002)CS(0.997)PVLSR ;; 221.47 2.98E-35 324050000 330444 407094 276136 206462 394895 375733 496027 472403 306672 434729 TRUE FALSE FALSE 307281.582 374834.3888 383063.2544 480653.97 345363.5869 329378.8826 371915.7982 364847.1494 333254.5759 325870.0288 0.942957483 1.150257329 1.175509315 1.474986736 1.05982004 1.010767648 1.141301026 1.119609406 1.02266102 1 18.31393714 SGS(ph)MDPSGAHPSVR ddPTM_HeLa_A485_30min_R1 6 SGSMDPSGAHPSVR 14 0 Q07666;Q07666-3;Q07666-2 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.06)GS(0.922)MDPS(0.018)GAHPS(0.001)VR;S(0.024)GS(0.974)MDPS(0.002)GAHPSVR;S(0.403)GS(0.487)MDPS(0.109)GAHPSVR;S(0.222)GS(0.778)MDPSGAHPSVR;S(0.002)GS(0.991)MDPS(0.007)GAHPSVR;S(0.058)GS(0.933)MDPS(0.009)GAHPSVR ;;;;; 194.51 3.80E-18 2394936000 1068405 1829496 1798456 694423 2686570 1416778 1980507 2019620 1776635 1561640 TRUE FALSE FALSE 1306068.006 2043439.643 2463779.714 732357.5701 2419085.658 1490958.305 1557355.5 1524305.028 2133189.348 1172351.888 1.114058006 1.743025847 2.101570134 0.624690912 2.06344672 1.271766882 1.328402774 1.300211177 1.819581109 1 20.16097424 -11.00006566 3.237321952 0.5135369 1.486275739 0.10151412 0.433031064 302087044.4 79393.5075 1095484410 0.099250157 1.00E-11 11.00006566 0.972738839 SGS(ph)MDPSGAHPSVR ddPTM_HeLa_A486_30min_R1 1 SGSMDPSGAHPSVR 14 0 Q07666;Q07666-3;Q07666-2 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.007)GS(0.991)MDPS(0.003)GAHPSVR 129.77 0.00020293 246050000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SGS(ph)PAPETTNESVPFAQHSSLDSR ddPTM_HeLa_A486_30min_R1 2 SGSPAPETTNESVPFAQHSSLDSR 24 0 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 0 S(0.163)GS(0.803)PAPET(0.026)T(0.006)NES(0.002)VPFAQHSSLDSR;S(0.159)GS(0.84)PAPET(0.001)T(0.001)NESVPFAQHSSLDSR ; 130.25 2.89E-06 389210000 110859 120802 110781 16712.5 160920 77127 89678 81179 130011 35871 TRUE FALSE FALSE 103088.3566 111229.2096 153678.37 38907.5446 140735.9131 67611.85491 67239.61588 62696.31383 141280.4582 26888.66812 3.833895979 4.13665746 5.715358207 1.44698668 5.234023212 2.514511117 2.500667403 2.331700237 5.254275055 1 14.71471068 -5.738098348 0.869401162 2.830345263 4.369032592 0.142711367 1.469880171 1.330382285 2.165314756 0.727947613 1.234180786 1.83E-06 5.738098348 1.538687329 SGS(ph)PDLSEDQYFVKK ddPTM_HeLa_A486_30min_R1 1 SGSPDLSEDQYFVKK 15 1 Q9H706-3;Q9H706-2;Q9H706 Q9H706-3 GAREM GRB2-associated and regulator of MAPK protein 1 0 S(0.208)GS(0.787)PDLS(0.005)EDQYFVKK 56.746 0.014018 0 193970 118720 52952 315190 88754 185080 191880 170980 80333 419540 TRUE FALSE FALSE 180373.7047 109312.1948 73456.4325 733778.2488 77621.64572 162246.7114 143869.5945 132051.5865 87296.32912 314484.4533 0.573553646 0.347591729 0.23357731 2.333273525 0.246821886 0.515913298 0.457477605 0.419898615 0.277585516 1 18.26262917 SGS(ph)PISSEER ddPTM_HeLa_A485_30min_R1 3 SGSPISSEER 10 0 H8Y6P7;P0CAP2-3;P0CAP2;P0CAP1-11;P0CAP2-2 H8Y6P7 GCOM1;POLR2M DNA-directed RNA polymerase II subunit GRINL1A 1 0 SGS(1)PISSEER;SGS(1)PISSEER;S(0.014)GS(0.883)PIS(0.08)S(0.023)EER ;; 229.24 2.08E-17 1825480000 1277130 1458440 1264810 1339130 1723910 1352580 1741630 1738870 1252260 1836950 TRUE FALSE FALSE 1561223.162 1628991.871 1732715.852 1412283.281 1552271.467 1423398.997 1369516.523 1312409.406 1503577.096 1379032.172 1.132115113 1.181257337 1.256472393 1.024111917 1.125623825 1.032172437 0.993099763 0.951688752 1.090313284 1 20.39522468 -5.760947656 1.126817887 1.007251762 1.184691094 0.576400419 0.058975539 0.341796348 0.920742681 0.025066768 0.037378387 1.73E-06 5.760947656 0.177439332 SGS(ph)PISSEER ddPTM_HeLa_A486_30min_R1 2 SGSPISSEER 10 0 H8Y6P7;P0CAP2-3;P0CAP2;P0CAP1-11;P0CAP2-2 H8Y6P7 GCOM1;POLR2M DNA-directed RNA polymerase II subunit GRINL1A 1 0 SGS(1)PISSEER;SGS(1)PISSEER ; 274.71 8.75E-34 2624000000 1877070 2136780 1462670 764010 2188700 2109010 2442900 2457700 1686480 2412600 TRUE FALSE FALSE 1745497.086 1967453.771 2029054.996 1778653.891 1914172.837 1848821.789 1831660.582 1898135.361 1832665.444 1808469.257 0.965179297 1.087911096 1.121973729 0.983513479 1.0584492 1.022313087 1.012823732 1.049581216 1.013379375 1 20.78633764 -5.282784461 24.99892325 1.023472817 1.061310369 0.142637341 0.042306231 1533.925338 1796497.891 0.011802866 0.017519526 5.21E-06 5.282784461 0.037837552 SGS(ph)PRPTEPTDFLMLFEGS(ph)PSGK ddPTM_HeLa_A485_30min_R1 6 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 2 0 S(0.437)GS(0.562)PRPTEPTDFLMLFEGS(0.958)PS(0.042)GK;S(0.398)GS(0.449)PRPT(0.046)EPT(0.107)DFLMLFEGS(0.964)PS(0.036)GK;S(0.423)GS(0.577)PRPTEPTDFLMLFEGS(0.963)PS(0.037)GK;S(0.427)GS(0.572)PRPT(0.001)EPTDFLMLFEGS(0.997)PS(0.003)GK;S(0.424)GS(0.576)PRPTEPTDFLMLFEGS(0.976)PS(0.024)GK;S(0.454)GS(0.544)PRPT(0.002)EPT(0.001)DFLMLFEGS(0.963)PS(0.037)GK ;;;;; 166.01 2.65E-14 346359000 193693 179416 131523 292119 242175 206451 340758 317482 161272 412523 TRUE FALSE FALSE 236779.3396 200397.1405 180178.8308 308076.7213 218063.2067 217260.4551 267952.2696 239619.0417 193637.8111 309688.608 0.764572327 0.647092387 0.581806454 0.994795137 0.704136998 0.701544873 0.865231276 0.773741867 0.625266174 1 18.24045879 -10.94405125 2.78923254 1.179765811 0.742438573 0.315616648 0.114888613 17136432.76 11626346.62 20019345.76 0.029235651 1.14E-11 10.94405125 -0.437327239 SGS(ph)PRPTEPTDFLMLFEGS(ph)PSGK ddPTM_HeLa_A486_30min_R1 7 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 2 0 S(0.447)GS(0.542)PRPT(0.004)EPT(0.006)DFLMLFEGS(0.938)PS(0.062)GK;S(0.426)GS(0.573)PRPTEPTDFLMLFEGS(0.864)PS(0.136)GK;S(0.02)GS(0.973)PRPT(0.005)EPT(0.002)DFLMLFEGS(0.908)PS(0.092)GK;S(0.431)GS(0.525)PRPT(0.033)EPT(0.011)DFLMLFEGS(0.841)PS(0.159)GK;S(0.151)GS(0.848)PRPTEPTDFLMLFEGS(0.956)PS(0.044)GK;S(0.449)GS(0.549)PRPT(0.001)EPTDFLMLFEGS(0.969)PS(0.031)GK;S(0.454)GS(0.54)PRPT(0.003)EPT(0.003)DFLMLFEGS(0.961)PS(0.039)GK ;;;;;; 201.66 1.01E-28 541781000 392985 365363 192838 240694 361175 437147 563956 531370 319080 593502 TRUE FALSE FALSE 365438.7809 336410.3053 267510.038 560347.796 315873.0637 383216.2477 422848.2439 410388.6507 346738.1113 444885.2362 0.821422585 0.756173228 0.601301226 1.259533359 0.710010218 0.861382255 0.950465894 0.922459586 0.779387768 1 18.7630737 SGS(ph)PRPTEPTDFLMLFEGSPSGK ddPTM_HeLa_A485_30min_R1 5 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.115)GS(0.885)PRPTEPTDFLMLFEGSPSGK;S(0.154)GS(0.844)PRPT(0.002)EPTDFLMLFEGSPSGK;S(0.157)GS(0.843)PRPTEPTDFLMLFEGSPSGK;S(0.119)GS(0.879)PRPT(0.001)EPT(0.002)DFLMLFEGSPSGK;S(0.055)GS(0.781)PRPT(0.055)EPT(0.109)DFLMLFEGSPSGK ;;;; 238.98 5.33E-49 2798770000 641856 594733 457796 896844 803181 700704 1079790 1080630 558847 1191350 TRUE FALSE FALSE 784634.6528 664281.8509 627153.7909 945836.3168 723213.4795 737391.7779 849084.0454 815603.7981 671002.4669 894368.3702 0.877305905 0.742738533 0.70122537 1.057546698 0.80863043 0.824483292 0.949367256 0.91193274 0.750252904 1 19.77050964 -14 0.068746814 1.448896442 0.679779494 0.150495168 0.102823505 624.9368463 3.09276207 46.37255092 5.978973564 1.00E-14 14 -0.769116949 SGS(ph)PRPTEPTDFLMLFEGSPSGK ddPTM_HeLa_A486_30min_R1 6 SGSPRPTEPTDFLMLFEGSPSGK 23 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.135)GS(0.865)PRPTEPTDFLMLFEGSPSGK;S(0.018)GS(0.982)PRPTEPTDFLMLFEGSPSGK;S(0.02)GS(0.98)PRPTEPTDFLMLFEGSPSGK;S(0.132)GS(0.868)PRPTEPTDFLMLFEGSPSGK;S(0.164)GS(0.834)PRPT(0.001)EPT(0.001)DFLMLFEGSPSGK;S(0.167)GS(0.807)PRPT(0.012)EPT(0.014)DFLMLFEGSPSGK ;;;;; 276.79 3.92E-75 3532920000 1520062 1542483 796375 793388 1398342 1666909 2049982 1981822 1272232 2167560 TRUE FALSE FALSE 1413513.503 1420251.029 1104752.728 1847047.36 1222948.907 1461262.715 1537054.821 1530604.393 1382510.094 1624788.868 0.869967496 0.874114205 0.679936175 1.13679223 0.752681737 0.899355445 0.946002802 0.942032792 0.850885996 1 20.63182083 -13.99998638 0.036574807 1.580294273 0.530381652 0.102572642 0.11361455 2326.923168 6.361414949 156.664805 52.07606438 1.00E-14 13.99998638 -1.049912621 SGS(ph)PSDNS(ph)GAEEMEVSLAKPK ddPTM_HeLa_A485_30min_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 2 0 S(0.054)GS(0.938)PS(0.012)DNS(0.996)GAEEMEVSLAKPK 112.17 8.01E-05 232090000 357030 245410 168530 602280 414930 325560 644770 638340 296560 790840 TRUE FALSE FALSE 436450.0918 274108.5647 230876.2601 635181.0313 373618.1123 342605.8182 507009.6222 481786.1141 356076.8718 593698.1423 0.735138045 0.461696854 0.388878192 1.069872021 0.629306521 0.577070726 0.853985529 0.811500121 0.599760798 1 19.17937007 -13.99999929 0.064487414 2.095337954 0.248457594 0.224092482 0.186089659 545.1330587 2.546629389 92.29925433 13.46966491 1.00E-14 13.99999929 -1.84688036 SGS(ph)PSDNS(ph)GAEEMEVSLAKPK ddPTM_HeLa_A486_30min_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 2 0 S(0.132)GS(0.831)PS(0.114)DNS(0.922)GAEEMEVSLAKPK 82.65 0.0026069 256000000 330050 310210 108060 200140 281330 339550 484920 465360 203370 515190 TRUE FALSE FALSE 306915.1994 285627.8298 149903.7259 465936.0345 246042.9681 297659.7733 363587.887 359407.6867 220998.2753 386183.0707 0.79474017 0.739617688 0.388167523 1.20651595 0.637114847 0.770773749 0.941491004 0.930666604 0.572262981 1 18.5589254 -13.99999886 0.055136175 1.722741869 0.440832396 0.078936511 0.213490576 1251.79864 5.062289007 131.0874187 25.15013877 1.00E-14 13.99999886 -1.281909473 SGS(ph)PSDNSGAEEMEVSLAKPK ddPTM_HeLa_A485_30min_R1 4 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.02)GS(0.634)PS(0.343)DNS(0.002)GAEEMEVSLAKPK;S(0.005)GS(0.993)PS(0.002)DNSGAEEMEVSLAKPK;S(0.018)GS(0.841)PS(0.14)DNS(0.001)GAEEMEVSLAKPK;S(0.012)GS(0.909)PS(0.079)DNSGAEEMEVSLAKPK ;;; 211.59 2.41E-27 3496790000 1526870 1163750 776960 2446830 1723360 1591040 2871880 2566760 1184500 3361650 TRUE FALSE FALSE 1866516.964 1299840.439 1064389.836 2580494.127 1551776.227 1674344.394 2258279.377 1937258.085 1422218.285 2523652.522 0.739609335 0.515063159 0.421765606 1.022523547 0.614892983 0.66346075 0.894845609 0.76764058 0.56355551 1 21.26708185 -14 0.097404518 1.907152744 0.485774149 0.226678881 0.169793721 296.5749281 1.973104737 56.02695868 3.177063443 1.00E-14 14 -1.421378594 SGS(ph)PSDNSGAEEMEVSLAKPK ddPTM_HeLa_A486_30min_R1 3 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.01)GS(0.923)PS(0.067)DNSGAEEMEVSLAKPK;S(0.073)GS(0.345)PS(0.291)DNS(0.291)GAEEMEVSLAKPK;S(0.016)GS(0.968)PS(0.016)DNSGAEEMEVSLAKPK ;; 237.5 1.38E-46 2389610000 1602810 1464790 581012 796470 1284310 1720770 2307430 2122250 1134940 2300950 TRUE FALSE FALSE 1490461.296 1348714.706 805995.4064 1854222.411 1123219.864 1508478.893 1730086.608 1639060.003 1233317.513 1724777.143 0.864147175 0.781964621 0.467304086 1.075050431 0.651226084 0.874593508 1.003078349 0.950302484 0.715059054 1 20.71797853 -6.505783038 23.50527787 0.916663866 0.768460771 0.161691622 0.162469447 635.6460567 873967.8459 0.056914626 0.048955662 3.12E-07 6.505783038 -0.148203095 SGS(ph)PVATFK ddPTM_HeLa_A486_30min_R1 1 SGSPVATFK 9 0 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 S(0.056)GS(0.944)PVATFK 80.916 0.0075947 320540000 581950 595820 339030 317470 611240 723950 914800 871040 489720 988890 TRUE FALSE FALSE 541158.3102 548605.0533 470311.4955 739086.204 534572.5796 634636.4096 685907.3642 672723.2067 532169.3239 741265.5074 0.730046528 0.740092514 0.634471037 0.997060023 0.721162086 0.856152624 0.925319413 0.907533401 0.717919988 1 19.49963086 -1 0.112904019 1.027265685 0.034868307 0.307587667 0.102862813 129.6283444 1.019378244 0.860648945 20.09291705 0.1 1 -0.992397378 SGS(ph)S(ph)PEVDSK ddPTM_HeLa_A485_30min_R1 1 SGSSPEVDSK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.009)GS(0.991)S(1)PEVDSK 130.99 0.00010132 0 883030 660060 449070 1771200 1020400 795270 1330700 1299200 714990 2249200 TRUE FALSE FALSE 1079456.977 737248.2752 615199.6804 1867956.171 918805.3932 836909.1075 1046385.074 980569.1629 858481.9347 1688515.833 0.63929337 0.436625029 0.364343448 1.106271042 0.544149705 0.49564777 0.619706996 0.580728438 0.508423977 1 20.68732428 -10.69104956 2.697001828 1.060247414 0.589207109 0.296393041 0.190268304 58098659.73 49223154.33 23867534.94 0.047574555 2.04E-11 10.69104956 -0.471040305 SGS(ph)S(ph)PEVDSK ddPTM_HeLa_A486_30min_R1 1 SGSSPEVDSK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.002)GS(0.998)S(1)PEVDSK 158.06 2.56E-06 580170000 1805100 1699800 881460 1379400 1511100 2460000 2745300 2344300 1459800 3555300 TRUE FALSE FALSE 1678571.812 1565101.657 1222784.918 3211312.911 1321563.748 2156510.211 2058396.903 1810554.066 1586336.639 2665029.739 0.629851062 0.587273618 0.458825994 1.204982017 0.495890807 0.809188048 0.772372958 0.679374807 0.595241628 1 21.3457202 -11.58612335 2.12700412 6.343804355 0.697262094 0.174777588 0.200180075 11071020.5 487698.9642 286550719.8 0.051572202 2.59E-12 11.58612335 -5.646542261 SGS(ph)S(ph)PEVK ddPTM_HeLa_A485_30min_R1 1 SGSSPEVK 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.008)GS(0.992)S(1)PEVK 104.82 0.0030441 716760000 1436900 997080 365080 4331000 583240 1222300 1667000 1394700 923940 4657700 TRUE FALSE FALSE 1756533.448 1113679.833 500138.2842 4567591.563 525170.5777 1286297.738 1310831.832 1052647.638 1109366.283 3496621.109 0.502351668 0.318501719 0.143034738 1.306287247 0.150193733 0.367868779 0.374885294 0.301047098 0.317268085 1 21.73753004 -10.53056267 5.039616395 1.002494985 0.420768638 0.235635524 0.313297575 0.008689945 0.000809463 0.300148014 0.072545613 2.95E-11 10.53056267 -0.581726347 SGS(ph)S(ph)PEVK ddPTM_HeLa_A486_30min_R1 2 SGSSPEVK 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.004)GS(0.996)S(1)PEVK;S(0.002)GS(0.998)S(1)PEVK ; 96.957 0.005754 1392770000 1984530 957230 589490 906430 736390 2652450 1689790 1471570 2002570 4827700 TRUE FALSE FALSE 1845424.695 881375.6086 817756.3151 2110214.848 644025.0996 2325217.687 1266986.669 1136525.635 2176154.38 3618812.497 0.509953112 0.24355382 0.225973663 0.583123566 0.177965866 0.642536105 0.350111168 0.314060382 0.601344884 1 21.78708493 -8.069540721 3.457692845 0.999540262 0.379868074 0.624508618 0.147174189 0.188888622 5.587252037 0.135213237 0.035789528 8.52E-09 8.069540721 -0.619672188 SGS(ph)S(ph)PEVKDKPR ddPTM_HeLa_A485_30min_R1 1 SGSSPEVKDKPR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.145)GS(0.861)S(0.994)PEVKDKPR 76.151 0.031326 641020000 609780 558290 322460 1290100 1482900 1156500 2704200 3385500 650350 2263400 TRUE FALSE FALSE 745423.4573 623577.159 441751.3727 1360574.896 1335257.269 1217052.552 2126425.579 2555200.817 780869.2796 1699176.035 0.438697017 0.366987967 0.259979757 0.800726275 0.785826331 0.716260427 1.251445133 1.503788168 0.459557611 1 20.69640389 -5.72695919 1.050958485 1.055958161 0.338811562 0.480093138 0.274994557 0.437012043 1.026356327 0.122408623 0.194642577 1.88E-06 5.72695919 -0.717146599 SGS(ph)S(ph)PEVKDKPR ddPTM_HeLa_A486_30min_R1 1 SGSSPEVKDKPR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.383)GS(0.62)S(0.997)PEVKDKPR 89.624 0.0081384 631970000 397020 254160 118010 521520 431730 404760 880280 856000 187510 856590 TRUE FALSE FALSE 369190.9482 234019.436 163706.6324 1214124.916 377578.3977 354824.8265 660024.6333 661107.4863 203763.5178 642094.2885 0.574979337 0.364462728 0.25495731 1.890882598 0.588041981 0.552605486 1.027924785 1.029611224 0.31734205 1 19.29242564 SGS(ph)S(ph)PGLR ddPTM_HeLa_A485_30min_R1 4 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.091)GS(0.912)S(0.997)PGLR;S(0.101)GS(0.9)S(0.999)PGLR;S(0.305)GS(0.878)S(0.817)PGLR;S(0.355)GS(0.696)S(0.949)PGLR ;;; 95.311 0.0063435 6078930000 5457780 5504900 5066950 8120710 7192050 5066730 7232480 5932490 5473640 10068780 TRUE FALSE FALSE 6671844.332 6148650.169 6941425.658 8564323.825 6475984.249 5332016.148 5687201.564 4477537.526 6572149.341 7558818.448 0.882657042 0.813440647 0.918321522 1.133024147 0.856745574 0.705403389 0.752392931 0.592359448 0.869467812 1 22.84972931 -6.003786858 24.90643616 0.759209544 0.935241367 0.236556853 0.125667135 194.2885759 1277863.195 0.039441583 0.043753309 9.91E-07 6.003786858 0.176031822 SGS(ph)S(ph)PGLR ddPTM_HeLa_A486_30min_R1 2 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.032)GS(0.969)S(0.999)PGLR;S(0.197)GS(0.804)S(0.999)PGLR ; 129.28 0.001172 7366800000 8124300 9003900 5747700 3900700 8158900 9563400 10751500 10547000 7770200 11800100 TRUE FALSE FALSE 7554828.524 8290398.172 7973363.369 9081026.73 7135534.683 8383564.942 8061360.982 8145678.339 8443727.192 8845278.154 0.854108643 0.937268227 0.901425962 1.026652477 0.806705517 0.947801165 0.911374503 0.920906974 0.954602789 1 23.07647608 -8.020189281 1.8434073 0.999962094 0.914149072 0.204473781 0.054451502 0.602991856 4.663209596 0.049334733 0.013998833 9.55E-09 8.020189281 -0.085813023 SGS(ph)SFSR ddPTM_HeLa_A485_30min_R1 2 SGSSFSR 7 0 A6PW57;Q99755-4;Q99755-3;Q99755 A6PW57 PIP5K1A Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha 1 0 S(0.003)GS(0.498)S(0.498)FSR;S(0.014)GS(0.493)S(0.493)FSR ; 109.11 0.0031059 1232310000 2221100 2373100 1989000 2250300 2307700 1837250 2449100 2779100 2235100 2916200 TRUE FALSE FALSE 2715176.032 2650613.402 2724813.869 2373228.191 2077937.285 1933445.569 1925829.778 2097521.368 2683664.068 2189245.009 1.240233972 1.210743152 1.244636328 1.084039558 0.949157028 0.883156322 0.879677592 0.958102615 1.225839985 1 21.06200199 -5.473920148 2.991531935 0.971055101 1.229788601 0.594280192 0.091613322 0.185244281 3.292426242 0.029175828 0.043801329 3.36E-06 5.473920148 0.2587335 SGS(ph)SFSR ddPTM_HeLa_A486_30min_R1 2 SGSSFSR 7 0 A6PW57;Q99755-4;Q99755-3;Q99755 A6PW57 PIP5K1A Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha 1 0 S(0.128)GS(0.436)S(0.436)FSR;S(0.01)GS(0.494)S(0.494)FS(0.002)R ; 88.37 0.0063178 643000000 2290550 2070270 1687100 1119380 1731150 2541470 2660200 2480200 1931830 2492300 TRUE FALSE FALSE 2129994.273 1906214.265 2340390.302 2605973.21 1514013.025 2227929.271 1994589.823 1915512.602 2099282.58 1868211.858 1.140124587 1.020341594 1.252743522 1.394902403 0.810407566 1.192546371 1.067646485 1.025318726 1.123685502 1 20.83322664 -5.753019172 24.99999984 1.047216266 1.192672877 0.283824499 0.127725418 292.2088909 867577.3832 0.03861831 0.049043127 1.77E-06 5.753019172 0.14545661 SGS(ph)SPEVKDKPR ddPTM_HeLa_A485_30min_R1 1 SGSSPEVKDKPR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.058)GS(0.471)S(0.471)PEVKDKPR 133.16 9.74E-06 112690000 50429 105810 53801 42430 167990 204000 370560 839240 65594 63575 TRUE FALSE FALSE 61646.75707 118183.5591 73704.22875 44747.84346 151264.3258 214681.1246 291386.8288 633415.0741 78758.11414 47726.92251 1.291655817 2.476245122 1.54429041 0.937580743 3.169371034 4.498113712 6.105292641 13.27165132 1.650182119 1 15.54251569 -6.331045612 2.022540071 6.443123828 1.680555923 0.212963723 3.189754532 0.409363149 3.292457578 1.275891073 1.116724779 4.67E-07 6.331045612 -4.762567905 SGS(ph)SPGLR ddPTM_HeLa_A486_30min_R1 2 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.015)GS(0.649)S(0.336)PGLR;S(0.064)GS(0.468)S(0.468)PGLR ; 150.27 0.00023461 4340670000 1196940 1300550 1129860 403853 1411650 1349540 1534650 1396150 1173330 1442390 TRUE FALSE FALSE 1113040.687 1197489.681 1567372.051 940190.1936 1234587.694 1183047.476 1150664.338 1078277.123 1275035.189 1081206.156 1.029443535 1.107549819 1.449651431 0.869575324 1.14186151 1.094192324 1.064241386 0.997290958 1.179271115 1 20.0442102 -5.284773685 24.98889545 1.055703529 1.186748559 0.21109979 0.128662481 1304.672648 1397181.417 0.035721995 0.053019879 5.19E-06 5.284773685 0.13104503 SGS(ph)SQELDVKPS(ph)ASPQER ddPTM_HeLa_A485_30min_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.301)GS(0.349)S(0.349)QELDVKPS(0.573)AS(0.427)PQER 57.278 0.031887 350010000 257590 225690 145930 392430 266920 239550 380050 330290 201500 461500 TRUE FALSE FALSE 314890.0068 252082.4823 199915.5797 413867.4572 240344.5076 252092.4676 298849.2128 249285.8596 241939.2017 346456.5433 0.908887458 0.727602024 0.577029309 1.194572495 0.693721947 0.727630846 0.862587873 0.719529951 0.698324816 1 18.40231488 SGS(ph)SQELDVKPS(ph)ASPQER ddPTM_HeLa_A486_30min_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.327)GS(0.542)S(0.131)QELDVKPS(0.731)AS(0.269)PQER 122.94 5.80E-05 356190000 410130 406470 143790 166570 258820 368850 490250 458000 294500 649740 TRUE FALSE FALSE 381382.0049 374259.8369 199469.3388 387783.378 226356.3822 323345.0372 367584.2647 353723.3981 320027.4971 487040.8749 0.783059543 0.768436195 0.40955359 0.796202943 0.464758491 0.663897126 0.754729805 0.726270456 0.657085501 1 18.89368333 -9.538601688 0.502853952 1.063416827 0.651502848 0.383888624 0.12590887 10.24540996 2.198908555 1.249282175 0.06124193 2.89E-10 9.538601688 -0.411913979 SGS(ph)SQELDVKPSASPQER ddPTM_HeLa_A485_30min_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.119)GS(0.73)S(0.15)QELDVKPSASPQER 144.5 2.52E-08 206520000 314580 245030 216750 475080 406410 342520 509640 468530 287230 646440 TRUE FALSE FALSE 384557.2357 273684.127 296934.8447 501032.4174 365946.3934 360453.8176 400751.2506 353622.2829 344874.4264 485294.4048 0.792420502 0.563954837 0.611865379 1.032429825 0.75407091 0.742752881 0.825789967 0.728675788 0.710649913 1 18.8885007 -14 0.310389687 3.179051893 0.740174855 0.273883554 0.120110302 429.916178 3.903140471 613.2132509 0.120129289 1.00E-14 14 -2.438877039 SGS(ph)SS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 3 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 S(0.438)GS(0.503)S(0.176)S(0.883)PDSEITELKFPSINHD;S(0.352)GS(0.393)S(0.393)S(0.858)PDS(0.004)EITELKFPSINHD;S(0.101)GS(0.476)S(0.476)S(0.939)PDS(0.008)EITELKFPSINHD ;; 103.29 0.00022319 2891810000 260775 291019 209279 248463 361160 267602 402690 386870 261120 412030 TRUE FALSE FALSE 318783.4991 325051.1405 286700.0109 262035.9045 325201.6423 281613.2269 316651.9918 291989.5259 313524.3889 309318.5039 1.030599512 1.050862255 0.926876366 0.847139441 1.051348814 0.910431233 1.023708533 0.943976911 1.013597263 1 18.23873361 -7.786637032 24.87765436 1.006798678 0.972173188 0.04231651 0.063964882 951.6329094 939519.5351 0.06196702 0.016025698 1.63E-08 7.786637032 -0.034625491 SGS(ph)SS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 S(0.339)GS(0.638)S(0.096)S(0.926)PDS(0.001)EITELKFPSINHD 113.68 6.92E-05 251410000 88928 90167 47711 8561.5 77868 81128 92120 82776 69004 70855 TRUE FALSE FALSE 82694.60642 83021.83854 66185.97694 19931.60467 68101.06935 71119.25221 69070.60165 63929.71179 74985.32228 53112.44681 1.556972261 1.563133381 1.246148143 0.375271822 1.282205461 1.339031743 1.300459794 1.203667231 1.411822026 1 15.69676237 SGS(ph)VSNYR ddPTM_HeLa_A485_30min_R1 1 SGSVSNYR 8 0 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 0 S(0.023)GS(0.912)VS(0.065)NYR 94.804 0.0031335 476310000 231320 307930 307850 211970 373870 304040 342980 394640 301780 301510 TRUE FALSE FALSE 282776.336 343939.7349 421736.5257 223549.3844 336646.1901 319959.0643 269699.5211 297853.9212 362344.4779 226349.1059 1.249292922 1.519510022 1.863212687 0.987630958 1.487287475 1.413564516 1.191520152 1.315905005 1.600821335 1 17.78819008 -12.27762972 0.305130009 8.61E-33 1.425181203 0.206451566 0.229977333 143.859754 3.484040143 92.55458464 0.229245923 5.28E-13 12.27762972 1.425181203 SGS(ph)VSNYR ddPTM_HeLa_A486_30min_R1 2 SGSVSNYR 8 0 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 0 S(0.017)GS(0.931)VS(0.052)NYR;S(0.113)GS(0.816)VS(0.071)NYR ; 113.1 0.0010875 404470000 430950 476700 390440 143733 548760 450530 478410 548930 409070 439770 TRUE FALSE FALSE 400742.6304 438924.5559 541628.8243 334617.6879 479929.4038 394948.1893 358706.7579 423950.6221 444528.517 329648.7296 1.21566563 1.331491726 1.64304842 1.015073494 1.455881248 1.198088006 1.088148461 1.286067817 1.348491522 1 18.33057 -5.965174549 1.132511637 1.200108948 1.353999422 0.118981277 0.178488293 1.150776428 3.128575932 0.081774959 0.098065557 1.08E-06 5.965174549 0.153890474 SGS(ph)YSYLEER ddPTM_HeLa_A485_30min_R1 1 SGSYSYLEER 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 S(0.007)GS(0.992)YS(0.001)YLEER 132.17 6.83E-05 339980000 323670 460310 447090 287710 645840 437410 462990 550420 489050 440410 TRUE FALSE FALSE 395669.2749 514139.2503 612487.196 303426.8688 581537.9019 460312.1112 364068.4042 415428.632 587197.8492 330623.8921 1.196735276 1.555057764 1.852519466 0.917740296 1.758910701 1.392253017 1.101155763 1.256499127 1.776029691 1 18.33483146 -6.527456375 24.81644478 1.296497253 1.465968593 0.062858915 0.312063216 385.3595735 2089089.634 0.116133873 0.090313165 2.97E-07 6.527456375 0.169471339 SGS(ph)YSYLEER ddPTM_HeLa_A486_30min_R1 2 SGSYSYLEER 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 SGS(0.944)YS(0.056)YLEER;S(0.009)GS(0.979)YS(0.012)YLEER ; 228.28 2.50E-17 291290000 745360 856220 727080 300550 970410 815890 938670 1001410 751860 852150 TRUE FALSE FALSE 693114.113 788370.0089 1008624.848 699695.589 848692.1291 715233.7872 703804.8378 773410.8036 817031.8302 638766.0934 1.085082819 1.234207665 1.579020643 1.095386239 1.328643048 1.119711573 1.101819344 1.210788756 1.279078271 1 19.28492821 -6.268952547 24.43019307 1.152925118 1.270868656 0.147472317 0.145366389 924.0034924 3004523.99 0.05102786 0.045884883 5.38E-07 6.268952547 0.117943538 SGSAT(ph)PPARAPGAPPR ddPTM_HeLa_A485_30min_R1 1 SGSATPPARAPGAPPR 16 1 H3BN50;Q15599-3 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 S(0.001)GS(0.002)AT(0.998)PPARAPGAPPR 88.781 0.0013334 77227000 86753 168050 103310 71577 158970 163830 238080 304850 92661 101980 TRUE FALSE FALSE 106050.9056 187701.9857 141528.6681 75487.07027 143142.3886 172407.8855 187212.2631 230085.0595 111257.2128 76558.2628 1.385231348 2.451753459 1.848640015 0.986008139 1.869718348 2.251982727 2.445356728 3.00535894 1.453235858 1 16.22427047 -6.104335466 5.258862366 2.17779847 1.703058147 0.04342516 0.622571955 0.530286263 21.78502622 0.205647572 0.207090603 7.86E-07 6.104335466 -0.474740323 SGSDAGEARPPTPAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SGSDAGEARPPTPASPR 17 1 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 SGSDAGEARPPTPAS(1)PR;SGSDAGEARPPT(0.015)PAS(0.985)PR;SGSDAGEARPPT(0.001)PAS(0.999)PR;SGSDAGEARPPT(0.167)PAS(0.833)PR ;;; 96.876 0.00028542 1540230000 991290 1308650 1241390 1057780 1436770 1324540 1538180 1517860 1042580 1506450 TRUE FALSE FALSE 1211799.041 1461685.234 1700631.82 1115563.843 1293720.134 1393890.866 1209535.277 1145602.455 1251816.243 1130919.739 1.071516394 1.292474774 1.503759958 0.986421763 1.143953978 1.23252855 1.069514693 1.012982987 1.106901047 1 20.10906511 -6.405782579 0.624108835 1.023130568 1.258201731 0.246901068 0.132800907 1.161486505 0.969462427 0.114315748 0.109073994 3.93E-07 6.405782579 0.235071163 SGSDAGEARPPTPAS(ph)PR ddPTM_HeLa_A486_30min_R1 5 SGSDAGEARPPTPASPR 17 1 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 SGSDAGEARPPT(0.004)PAS(0.996)PR;SGSDAGEARPPT(0.001)PAS(0.999)PR;SGSDAGEARPPT(0.254)PAS(0.746)PR;SGSDAGEARPPT(0.013)PAS(0.987)PR;SGSDAGEARPPT(0.012)PAS(0.988)PR ;;;; 103.95 5.42E-05 1054220000 1871260 2134620 1762650 780130 2541560 1847330 2084490 2133140 1855380 2236810 TRUE FALSE FALSE 1740094.337 1965464.937 2445195.285 1816182.066 2222773.846 1619425.207 1562928.555 1647470.588 2016205.832 1676698.217 1.037810096 1.172223431 1.458339528 1.083189597 1.325685101 0.96584179 0.932146607 0.982568343 1.202485821 1 20.67719162 -6.272103905 24.95498054 1.010240157 1.219194213 0.369728844 0.129627666 764.4108948 1788716.519 0.045680156 0.040679055 5.34E-07 6.272103905 0.208954056 SGSGEDESS(ph)EDEAR ddPTM_HeLa_A486_30min_R1 1 SGSGEDESSEDEAR 14 0 Q8N7H5 Q8N7H5 PAF1 RNA polymerase II-associated factor 1 homolog 1 0 SGSGEDES(0.117)S(0.883)EDEAR 115.12 0.0001279 0 71356 81318 71039 31073 88815 77241 84265 88805 78650 81330 TRUE FALSE FALSE 66354.31288 74874.06552 98547.20329 72339.51434 77674.99453 67711.79075 63181.00574 68586.0401 85467.44533 60964.43863 1.088410135 1.228159681 1.616470282 1.186585425 1.274103334 1.110676851 1.036358362 1.125017168 1.401922945 1 15.89568032 -6.071996609 2.527946653 1.137311782 1.299405258 0.156861639 0.16246579 0.557266727 7.027447004 0.059766959 0.062271063 8.47E-07 6.071996609 0.162093476 SGSGS(ph)VGNGSSRYS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A485_30min_R1 2 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.083)GS(0.385)GS(0.434)VGNGS(0.087)S(0.082)RY(0.187)S(0.68)PS(0.064)QNS(0.964)PIHHIPS(0.034)RR;S(0.086)GS(0.399)GS(0.508)VGNGS(0.009)S(0.011)RY(0.204)S(0.766)PS(0.019)QNS(0.901)PIHHIPS(0.098)RR ; 87.544 0.0029647 3017200000 455890 858270 683260 319970 1034620 899880 1203970 1746730 680640 530370 TRUE FALSE FALSE 557301.1577 958637.2105 936026.3068 337449.1509 931609.6 946996.3253 946731.974 1318341.729 817238.2048 398158.5197 1.399696679 2.407677252 2.350888554 0.847524627 2.339795719 2.378440441 2.377776506 3.311097624 2.052544814 1 18.6029834 -5.953389634 24.99971832 2.375932776 1.810202741 0.091046935 0.679477379 249.5382441 133839.9618 0.206140926 0.233741792 1.11E-06 5.953389634 -0.565730035 SGSGS(ph)VGNGSSRYS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A486_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.266)GS(0.315)GS(0.409)VGNGS(0.028)S(0.028)RY(0.454)S(0.495)PS(0.061)QNS(0.943)PIHHIPSRR 77.044 0.0057063 534820000 180830 156400 142040 28678 227030 161780 198770 213820 129510 171410 TRUE FALSE FALSE 168154.7508 144006.2944 197041.692 66763.83331 198553.7804 141821.2285 149035.6436 165137.8537 140736.0311 128487.8203 1.308721328 1.120777783 1.533543736 0.519612156 1.545312077 1.103771767 1.159920398 1.285241304 1.095325851 1 16.97127208 -13.58091489 0.274605265 6.49E-09 1.197783135 0.043188822 0.27140597 660.700366 7.94602354 372.9999468 0.307860008 2.62E-14 13.58091489 1.197783128 SGSGSVGNGS(ph)SRYS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A485_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.101)GS(0.149)GS(0.225)VGNGS(0.382)S(0.163)RY(0.146)S(0.774)PS(0.135)QNS(0.618)PIHHIPS(0.307)RR 68.503 0.0081115 685190000 69557 127130 122820 60101 142820 133060 170430 224750 78650 113370 TRUE FALSE FALSE 85029.71468 141996.7476 168256.229 63384.16545 128600.3393 140026.8159 134016.2382 169629.7101 94434.33358 85108.94542 0.999069067 1.668411551 1.976951167 0.744741521 1.511008493 1.645265549 1.574643389 1.993089084 1.109570012 1 16.37702315 -5.972743876 24.9996012 1.538429076 1.379289803 0.004659484 0.410033782 968.069189 887918.8415 0.126322582 0.143233828 1.06E-06 5.972743876 -0.159139272 SGSGSVGNGSS(ph)RY(ph)SPSQNS(ph)PIHHIPSR ddPTM_HeLa_A485_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.131)GS(0.145)GS(0.152)VGNGS(0.258)S(0.343)RY(0.501)S(0.473)PS(0.208)QNS(0.788)PIHHIPS(0.001)R 61.014 0.01254 579470000 92413 107530 111310 123470 158800 93654 137050 122280 105270 164530 TRUE FALSE FALSE 112969.953 120104.6981 152488.201 130214.8535 142989.3144 98557.57862 107768.1479 92290.63827 126396.7234 123515.699 0.914620198 0.97238407 1.234565341 1.054237272 1.157661056 0.797935643 0.872505672 0.747197636 1.023325168 1 16.9143349 -6.263908878 24.99689972 0.871412227 1.070088362 0.377146734 0.113635836 222.5723261 2252922.252 0.039280306 0.03624549 5.45E-07 6.263908878 0.198676134 SGSGSVGNGSSRY(ph)SPS(ph)QNSPIHHIPSRR ddPTM_HeLa_A486_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SGSGSVGNGS(0.273)S(0.246)RY(0.335)S(0.274)PS(0.414)QNS(0.372)PIHHIPS(0.086)RR 54.05 0.017812 2958600000 114570 117220 107920 29781 122080 98808 121570 127110 91147 88118 TRUE FALSE FALSE 106539.2346 107931.0603 149709.5142 69331.67305 106767.588 86618.07357 91151.90016 98169.82779 99047.69535 66052.67925 1.612943424 1.634014873 2.266516906 1.049642101 1.616400565 1.311348375 1.379987931 1.486235364 1.49952578 1 16.01132946 -3.057276187 0.049369121 4.41E-09 3.679185333 0.31137205 0.27929401 424.3490014 2.379383323 53.17344416 142.3251318 0.000876443 3.057276187 3.679185329 SGSGSVGNGSSRY(ph)SPSQNS(ph)PIHHIPSRR ddPTM_HeLa_A486_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SGSGSVGNGS(0.026)S(0.16)RY(0.501)S(0.316)PS(0.318)QNS(0.614)PIHHIPS(0.066)RR 68.441 0.0047541 3246400000 85184 103550 101990 28198 137740 88946 113130 113250 102430 88246 TRUE FALSE FALSE 79213.04149 95344.32088 141483.2594 65646.36905 120463.3648 77972.74686 84823.67743 87465.44723 111308.7149 66148.62721 1.197500913 1.441365073 2.13886917 0.992407126 1.821101509 1.178750794 1.282319543 1.322256423 1.682706347 1 16.0134236 -6.300900336 24.99658501 1.312667233 1.51924333 0.100529643 0.334040504 1454.653363 921447.448 0.114588849 0.101059225 5.00E-07 6.300900336 0.206576098 SGSGSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSR ddPTM_HeLa_A485_30min_R1 6 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SGSGSVGNGS(0.016)S(0.013)RY(0.002)S(0.968)PSQNS(1)PIHHIPSR;SGSGSVGNGS(0.003)S(0.007)RYS(0.988)PS(0.003)QNS(1)PIHHIPSR;SGSGSVGNGS(0.005)S(0.004)RY(0.002)S(0.96)PS(0.029)QNS(1)PIHHIPSR;S(0.023)GS(0.027)GS(0.03)VGNGS(0.06)S(0.067)RY(0.029)S(0.762)PS(0.064)QNS(0.937)PIHHIPS(0.002)R;SGSGSVGNGS(0.025)S(0.017)RY(0.002)S(0.953)PS(0.005)QNS(1)PIHHIPSR;SGSGSVGNGS(0.008)S(0.01)RY(0.001)S(0.974)PS(0.008)QNS(0.999)PIHHIPSR ;;;;; 191.65 3.59E-20 17813410000 898216 1113445 1140194 1019705 1580930 1027564 1406470 1312533 1129767 1379330 TRUE FALSE FALSE 1098021.05 1243652.707 1561999.208 1075408.902 1423527.058 1081365.662 1105966.195 990632.2238 1356500.874 1035488.416 1.060389507 1.201030053 1.508466135 1.038552325 1.374739723 1.044304935 1.068062354 0.956681126 1.310010671 1 19.98187998 -6.288801556 24.50581905 1.072620023 1.238754563 0.211737882 0.155063476 911.9592024 816755.6521 0.05300471 0.046757741 5.14E-07 6.288801556 0.16613454 SGSGSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSR ddPTM_HeLa_A486_30min_R1 5 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.005)GS(0.007)GS(0.008)VGNGS(0.038)S(0.044)RY(0.007)S(0.886)PS(0.017)QNS(0.988)PIHHIPSR;SGSGSVGNGS(0.017)S(0.011)RY(0.001)S(0.965)PS(0.006)QNS(1)PIHHIPSR;SGSGSVGNGS(0.006)S(0.004)RY(0.003)S(0.968)PS(0.022)QNS(0.998)PIHHIPSR;SGSGSVGNGS(0.026)S(0.021)RY(0.031)S(0.918)PS(0.006)QNS(0.997)PIHHIPSR;S(0.001)GS(0.001)GS(0.001)VGNGS(0.046)S(0.04)RY(0.133)S(0.77)PS(0.016)QNS(0.987)PIHHIPS(0.005)R ;;;; 153.83 6.31E-09 15373250000 1454412 1597175 1095988 377717 1670320 1484349 1867900 1724330 1358820 1457332 TRUE FALSE FALSE 1352465.229 1470609.036 1520383.905 879344.2648 1460812.89 1301225.112 1400531.663 1331737.701 1476603.612 1092406.582 1.238060309 1.346210341 1.391774758 0.804960607 1.33724285 1.191154589 1.282060807 1.21908612 1.351697835 1 20.05907848 SGSGSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A485_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SGSGSVGNGS(0.003)S(0.07)RY(0.238)S(0.673)PS(0.24)QNS(0.763)PIHHIPS(0.014)RR 125.02 4.95E-06 5106600000 10798 24323 19261 9469 27675 19755 27182 38749 15050 14312 TRUE FALSE FALSE 13199.97785 27167.36327 26386.44542 9986.267493 24919.57983 20789.34125 21374.34364 29245.74699 18070.39695 10744.28179 1.228558419 2.528541581 2.455859398 0.929449514 2.319334164 1.934921445 1.989369234 2.721982498 1.681861785 1 13.39128143 SGSGSVGNGSSRYS(ph)PSQNSPIHHIPSR ddPTM_HeLa_A485_30min_R1 3 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SGSGSVGNGS(0.007)S(0.004)RYS(0.989)PSQNSPIHHIPSR;S(0.002)GS(0.001)GS(0.001)VGNGS(0.016)S(0.008)RYS(0.875)PS(0.098)QNSPIHHIPSR;SGSGSVGNGS(0.01)S(0.01)RYS(0.489)PS(0.489)QNS(0.001)PIHHIPSR ;; 197.04 2.10E-28 1975070000 242428 369023 399961 172207 486306 274957 403415 342242 378634 352467 TRUE FALSE FALSE 296355.2722 412177.0298 547923.2177 181614.2324 437887.6671 289353.3234 317222.0897 258306.6129 454622.3708 264603.4636 1.119997706 1.557715928 2.070733354 0.686363776 1.654882598 1.093535661 1.198858418 0.97620269 1.718127059 1 18.01347242 -5.258875569 24.99965812 1.204474593 1.580305641 0.199699948 0.359765925 379.7861246 3703266.178 0.09534331 0.155799212 5.51E-06 5.258875569 0.375831048 SGSGSVGNGSSRYS(ph)PSQNSPIHHIPSR ddPTM_HeLa_A486_30min_R1 4 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SGSGSVGNGS(0.014)S(0.082)RYS(0.89)PS(0.014)QNSPIHHIPSR;S(0.002)GS(0.002)GS(0.002)VGNGS(0.017)S(0.007)RYS(0.969)PS(0.001)QNSPIHHIPSR;SGSGSVGNGSSRYS(0.954)PS(0.046)QNSPIHHIPSR;S(0.009)GS(0.009)GS(0.007)VGNGS(0.033)S(0.025)RY(0.001)S(0.819)PS(0.096)QNSPIHHIPSR ;;; 242.34 4.39E-50 2256620000 396351 444276 396272 36547.8 523918 329597 438027 360256 413027 198811 TRUE FALSE FALSE 368568.8417 409069.9517 549719.1309 85085.12542 458203.3191 288934.6732 328428.0116 278233.5731 448828.5129 149027.4316 2.473161067 2.744930564 3.688711033 0.570935998 3.074624009 1.938801939 2.203809112 1.866995695 3.011717428 1 17.18521839 -10.58767693 0.227399264 1.07E-32 2.62150246 0.196276477 0.814378526 43.1324297 1.734678192 29.71975292 1.631905149 2.58E-11 10.58767693 2.62150246 SGSGSVGNGSSRYS(ph)PSQNSPIHHIPSRR ddPTM_HeLa_A485_30min_R1 2 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SGSGSVGNGS(0.046)S(0.185)RY(0.015)S(0.753)PSQNSPIHHIPSRR;SGSGSVGNGS(0.009)S(0.035)RY(0.001)S(0.954)PS(0.001)QNSPIHHIPSRR ; 131.08 1.81E-06 2611300000 53420 117065 142466 24859.6 125628 81164 105239 129042 75430 52552 TRUE FALSE FALSE 65303.0947 130754.7334 195170.1019 26217.617 113120.0352 85413.62154 82753.82793 97394.24717 90568.10912 39451.75355 1.655264692 3.314294592 4.947057719 0.664548839 2.867300564 2.165014577 2.097595683 2.468692477 2.295667517 1 15.26780181 -5.268523801 24.99923162 2.053127668 3.306414571 0.290751729 0.967687584 739.0752366 2608019.812 0.267832553 0.406908409 5.39E-06 5.268523801 1.253286904 SGSGSVGNGSSRYSPS(ph)QNSPIHHIPSR ddPTM_HeLa_A485_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SGSGSVGNGSSRYS(0.226)PS(0.773)QNSPIHHIPSR 176.5 8.35E-15 570470000 47219 64772 59641 41758 97584 58555 69968 70725 73433 62683 TRUE FALSE FALSE 57722.70365 72346.52196 81704.68777 44039.1338 87868.19432 61620.84926 55018.76521 53379.58286 88170.32953 47057.2817 1.226647642 1.537413963 1.736281503 0.935862256 1.867260308 1.309485951 1.169187068 1.134353302 1.873680892 1 15.52213036 SGSIVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_A485_30min_R1 4 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 0 SGSIVELIAGGGSS(0.001)CS(0.999)PVLSR;SGSIVELIAGGGSSCS(1)PVLSR;SGSIVELIAGGGSS(0.002)CS(0.997)PVLS(0.001)R;SGSIVELIAGGGSS(0.001)CS(0.999)PVLSR ;;; 353 5.81E-128 2540270000 2194710 2718080 3026400 2947520 4073320 2316740 3032850 2864350 2465310 3544380 TRUE FALSE FALSE 2682915.668 3035935.812 4145991.299 3108535.554 3667765.959 2438040.924 2384856.821 2161863.671 2960075.104 2660831.295 1.008299802 1.140972679 1.558156395 1.168257288 1.3784286 0.916270388 0.896282611 0.812476791 1.112462526 1 21.34344561 -6.273347523 24.44940072 0.932577242 1.257207258 0.486329594 0.155420203 477.7777328 980953.9471 0.055339316 0.049208552 5.33E-07 6.273347523 0.324630016 SGSIVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_A486_30min_R1 4 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 0 SGSIVELIAGGGSSCS(1)PVLSR;SGSIVELIAGGGSS(0.078)CS(0.922)PVLSR;SGSIVELIAGGGS(0.306)S(0.306)CS(0.387)PVLSR;SGSIVELIAGGGSS(0.008)CS(0.987)PVLS(0.005)R ;;; 319.36 3.19E-102 2372906000 2475033 3161945 2619867 1307406.4 3741530 3242245 3582478 3492864 2913043 3380101 TRUE FALSE FALSE 2301545.968 2911380.963 3634349.665 3043708.172 3272232.419 2842249.777 2686104.113 2697615.116 3165547.913 2533701.709 0.9083729 1.149062241 1.434403131 1.201289071 1.291482895 1.121777582 1.060150097 1.064693254 1.249376713 1 21.27281526 -6.488895663 16.28993752 1.09780561 1.207594434 0.113447625 0.136577035 22.00022778 10545.31107 0.050017058 0.043955378 3.24E-07 6.488895663 0.109788823 SGSK(ac)LIQHQRMHTGEK(ac)PYECK ddPTM_HeLa_A485_30min_R1 1 SGSKLIQHQRMHTGEKPYECK 21 3 A0A1W2PPI4;Q14585 A0A1W2PPI4 ZNF345 Zinc finger protein 345 0 2 SGSK(1)LIQHQRMHTGEK(1)PYECK 49.973 0.020047 141480000 66646 38919 57821 110340 139150 59323 139260 114780 78716 151790 FALSE TRUE FALSE 81471.17277 43470.2385 79211.39403 116367.5948 125295.7374 62429.06055 109505.9634 86630.02503 94513.57917 113951.5465 0.714963292 0.381480022 0.695132242 1.021202418 1.09955276 0.547856194 0.960987075 0.760235624 0.829419013 1 16.79806098 -5.00983502 8.432423953 0.874939264 0.545180725 0.412173718 0.165147974 0.134039841 81.63842831 0.043720646 0.082915131 9.78E-06 5.00983502 -0.329758539 SGSLDDS(ph)FSDFQELPASSK ddPTM_HeLa_A486_30min_R1 1 SGSLDDSFSDFQELPASSK 19 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 SGSLDDS(0.997)FS(0.003)DFQELPASSK 187.04 2.98E-18 136180000 132690 116170 105910 53764 150350 128610 153730 164270 124920 151510 TRUE FALSE FALSE 123389.1162 106964.2661 146921.1884 125165.3091 131491.701 112743.4058 115265.128 126869.307 135748.1662 113570.9098 1.086450011 0.941828029 1.293651592 1.102089516 1.157793851 0.992713768 1.014917712 1.11709334 1.195272331 1 16.79323382 -6.23094139 24.97713918 1.068250107 1.115722666 0.065525697 0.098203492 2520.622503 2064332.395 0.033490619 0.033485975 5.88E-07 6.23094139 0.047472558 SGSLDSELSVS(ph)PK ddPTM_HeLa_A485_30min_R1 4 SGSLDSELSVSPK 13 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELSVS(1)PK;SGSLDSELSVS(1)PK;SGSLDSELS(0.108)VS(0.892)PK;SGSLDSELSVS(1)PK ;;; 253.15 3.87E-41 2225440000 2505930 1976400 1280110 4316870 2612800 2061690 3692530 3229380 1662820 5398300 TRUE FALSE FALSE 3063365.483 2207522.788 1753675.959 4552689.677 2352660.458 2169636.9 2903590.8 2437369.492 1996532.722 4052603.158 0.75590068 0.544717235 0.432728271 1.123398838 0.580530678 0.535368704 0.716475482 0.601433053 0.492654386 1 21.95041748 -10.20626732 4.103530933 1.000192452 0.643655125 0.251237213 0.185102489 45405961.92 28233443.83 74403.46531 0.044589587 6.22E-11 10.20626732 -0.356537327 SGSLDSELSVS(ph)PK ddPTM_HeLa_A486_30min_R1 6 SGSLDSELSVSPK 13 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELSVS(1)PK;SGSLDSELSVS(1)PK;SGSLDSELSVS(1)PK;SGSLDSELSVS(1)PK;SGSLDSELSVS(1)PK;SGSLDSELSVS(1)PK ;;;;; 299.56 8.64E-58 3954110000 3362800 2991760 1275673 2305630 2402770 3361730 4672800 4075930 2294590 5865850 TRUE FALSE FALSE 3127085.086 2754682.042 1769647.749 5367623.16 2101392.182 2946993.932 3503616.016 3147929.716 2493486.909 4397002.98 0.711185573 0.626490829 0.402466807 1.220745855 0.477914659 0.670227868 0.796819113 0.715926218 0.567087837 1 22.06808908 -10.67647552 2.722170631 1.040677621 0.690505459 0.165793209 0.210103174 56392089.45 49770184.7 15905215.42 0.050350535 2.11E-11 10.67647552 -0.350172162 SGSLDSELSVS(ph)PKR ddPTM_HeLa_A485_30min_R1 3 SGSLDSELSVSPKR 14 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELSVS(1)PKR;SGSLDSELSVS(1)PKR;SGSLDSELS(0.021)VS(0.979)PKR ;; 204.07 3.79E-22 3006350000 1960980 1983370 1469110 2687920 3093450 2443130 3796500 4077940 1780630 3720340 TRUE FALSE FALSE 2397193.236 2215307.868 2012594.924 2834754.263 2785455.256 2571048.509 2985346.76 3077818.821 2137986.108 2792927.706 0.858308373 0.793184823 0.720604017 1.014975883 0.99732451 0.92055677 1.068895108 1.102004472 0.765499982 1 21.4133468 -5.269124141 24.9855966 0.987356298 0.790947644 0.475210154 0.091644946 468.7002157 1523892.413 0.025353464 0.038415829 5.38E-06 5.269124141 -0.196408654 SGSLDSELSVS(ph)PKR ddPTM_HeLa_A486_30min_R1 4 SGSLDSELSVSPKR 14 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELSVS(1)PKR;SGSLDSELSVS(1)PKR;SGSLDSELS(0.001)VS(0.999)PKR;SGSLDSELSVS(1)PKR ;;; 219.85 6.52E-28 3511740000 3254720 2861820 1747030 1894190 3742100 3477470 5077800 4759500 2452600 4737300 TRUE FALSE FALSE 3026580.935 2635038.961 2423526.803 4409770.047 3272730.924 3048455.108 3807280.733 3675865.749 2665193.343 3551049.245 0.852306101 0.742045176 0.682481891 1.24182171 0.921623638 0.858466019 1.072156557 1.03514919 0.750536858 1 21.75981394 -5.219310566 24.99845437 0.980277614 0.757254424 0.387673308 0.128904334 511.0065624 303221.1182 0.034629686 0.059979809 6.04E-06 5.219310566 -0.22302319 SGSMDPS(ph)GAHPSVR ddPTM_HeLa_A486_30min_R1 1 SGSMDPSGAHPSVR 14 0 Q07666;Q07666-3;Q07666-2 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.169)GS(0.152)MDPS(0.674)GAHPS(0.005)VR 94.551 0.010469 26502000 83029 86786 71707 9657.6 101390 66911 80303 78754 85597 40324 TRUE FALSE FALSE 77209.09586 79908.76129 99473.87078 22483.38087 88672.72078 58656.20112 60210.34004 60823.43339 93016.61688 30226.60793 2.554342056 2.64365626 3.290937276 0.743827455 2.933598139 1.94054858 1.991964833 2.012248067 3.07730914 1 14.88353147 SGSMDPSGAHPS(ph)VRQTPSRQPPLPHR ddPTM_HeLa_A485_30min_R1 1 SGSMDPSGAHPSVRQTPSRQPPLPHR 26 2 Q07666;Q07666-3 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 SGSMDPSGAHPS(0.499)VRQT(0.499)PS(0.002)RQPPLPHR 167.88 3.14E-14 219890000 51577 184020 158770 22949 360990 175170 236650 412720 114300 68565 TRUE FALSE FALSE 63050.12571 205539.5382 217505.63 24202.64576 325048.5681 184341.6303 186087.7942 311499.7729 137238.9616 51473.00735 1.2249163 3.993151923 4.225625064 0.470200733 6.314932522 3.58132621 3.615250086 6.051711158 2.666231655 1 15.65152845 -4.257354696 23.44936493 3.719197987 1.224913864 0.126649791 1.777598047 327.9086308 1882272.844 0.419260886 3.071869236 5.53E-05 4.257354696 -2.494284123 SGSMDPSGAHPS(ph)VRQTPSRQPPLPHR ddPTM_HeLa_A486_30min_R1 1 SGSMDPSGAHPSVRQTPSRQPPLPHR 26 2 Q07666;Q07666-3 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 SGSMDPSGAHPS(0.455)VRQT(0.455)PS(0.089)RQPPLPHR 76.765 0.0033478 85586000 40401 38789 68396 7494.8 132710 27654 62865 60017 36985 18351 TRUE FALSE FALSE 37569.09853 35715.21837 94880.76291 17448.27317 116064.2743 24242.33065 47135.51208 46352.43926 40190.88958 13755.79016 2.731147983 2.596377087 6.897514562 1.268431182 8.43748509 1.762336469 3.426594296 3.369667517 2.921743435 1 13.74775139 -8.179813395 0.676868859 0.998088687 4.066371547 0.15145358 2.098580748 1.818805656 1.812437985 2.061549244 0.797406314 6.61E-09 8.179813395 3.06828286 SGSMDPSGAHPSVRQT(ph)PSRQPPLPHR ddPTM_HeLa_A485_30min_R1 1 SGSMDPSGAHPSVRQTPSRQPPLPHR 26 2 Q07666;Q07666-3 Q07666 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 SGSMDPSGAHPS(0.032)VRQT(0.962)PS(0.006)RQPPLPHR 176.94 7.57E-15 308850000 57512 211180 178280 27857 389120 187030 270160 486320 117630 63713 TRUE FALSE FALSE 70305.34599 235875.664 244233.1908 29378.75737 350377.8465 196822.6016 212438.109 367049.2575 141237.262 47830.52165 1.469884575 4.931488427 5.106220514 0.614226154 7.325402994 4.115000105 4.441475896 7.673954722 2.952868946 1 15.54564391 -5.767295328 24.99999863 4.887826317 3.314512098 0.089856786 2.233362459 335.0879038 1430543.119 0.657764342 0.765691777 1.71E-06 5.767295328 -1.573314219 SGSPS(ph)DNSGAEEMEVSLAKPK ddPTM_HeLa_A486_30min_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.007)GS(0.133)PS(0.853)DNS(0.007)GAEEMEVSLAKPK 113.23 3.19E-05 1194800000 307320 278190 132480 151160 263400 348920 511810 434330 251400 466690 TRUE FALSE FALSE 285778.455 256145.2112 183779.8039 351908.1192 230361.9159 305873.798 383749.7246 335442.5404 273191.5544 349827.7864 0.816911824 0.732203733 0.525343644 1.005946734 0.658500911 0.874355354 1.096967535 0.958879064 0.780931547 1 18.41628536 -6.516262212 24.09969878 0.960038329 0.750653525 0.355668777 0.134754945 217.3610855 791712.8904 0.049775431 0.040076081 3.05E-07 6.516262212 -0.209384804 SGSPSDNS(ph)GAEEMEVSLAKPK ddPTM_HeLa_A486_30min_R1 1 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.008)GS(0.036)PS(0.083)DNS(0.872)GAEEMEVS(0.001)LAKPK 74.953 0.0061862 380080000 330460 227030 124570 191950 259380 369230 481790 450400 244740 534730 TRUE FALSE FALSE 307296.4605 209039.316 172806.8401 446869.3006 226846.1418 323678.1567 361241.0461 347853.7522 265954.2603 400830.1275 0.766650108 0.521515978 0.431122384 1.114859563 0.565940847 0.807519531 0.901232271 0.86783335 0.663508659 1 18.61263142 -5.23900095 24.98549123 0.82938373 0.567938149 0.359336685 0.165831778 897.0187537 998841.2136 0.043477975 0.075235635 5.77E-06 5.23900095 -0.261445581 SGSS(ph)PEVDSK ddPTM_HeLa_A485_30min_R1 1 SGSSPEVDSK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.142)GS(0.231)S(0.627)PEVDSK 62.166 0.025817 394890000 1035300 895800 625310 1716700 1181500 1069300 1616400 1681200 943330 2492900 TRUE FALSE FALSE 1265598.913 1000556.018 856638.1903 1810478.974 1063865.712 1125286.895 1271042.935 1268883.064 1132647.678 1871465.908 0.676260736 0.534637587 0.457736466 0.967412212 0.56846652 0.601286344 0.679169698 0.678015591 0.605219509 1 20.83573734 -14 0.387281116 6.308171565 0.633186895 0.412865489 0.128144887 658.0508747 4.824580342 2940.730075 0.085067286 1.00E-14 14 -5.67498467 SGSS(ph)PGLR ddPTM_HeLa_A485_30min_R1 8 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SGS(0.054)S(0.946)PGLR;S(0.037)GS(0.045)S(0.918)PGLR;S(0.001)GS(0.058)S(0.942)PGLR;SGS(0.048)S(0.952)PGLR;S(0.02)GS(0.148)S(0.832)PGLR;SGS(0.045)S(0.955)PGLR;S(0.007)GS(0.117)S(0.876)PGLR;S(0.117)GS(0.296)S(0.587)PGLR ;;;;;;; 181.55 7.54E-06 28293230000 5513060 6575130 6602950 6350620 8367750 6056200 8068070 7042940 6265870 8963040 TRUE FALSE FALSE 6739421.177 7344034.257 9045655.977 6697538.29 7534627.429 6373293.267 6344260.934 5315647.922 7523372.635 6728719.081 1.00159051 1.091446109 1.344335507 0.995366014 1.119771436 0.94717779 0.9428631 0.789994033 1.118098786 1 22.68190046 -6.26270621 21.91832809 0.945453603 1.116037599 0.288701949 0.11719958 24.63404748 426201.8795 0.039912513 0.037191179 5.46E-07 6.26270621 0.170583996 SGSS(ph)PGLR ddPTM_HeLa_A486_30min_R1 6 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SGS(0.041)S(0.959)PGLR;S(0.001)GS(0.096)S(0.903)PGLR;S(0.002)GS(0.132)S(0.866)PGLR;S(0.001)GS(0.099)S(0.899)PGLR;S(0.401)GS(0.164)S(0.435)PGLR;S(0.003)GS(0.119)S(0.878)PGLR ;;;;; 175.51 1.40E-05 24568490000 6916680 7525370 5995470 2454486 8100680 7460630 8494840 8181100 6699850 7858300 TRUE FALSE FALSE 6431856.45 6929032.274 8317076.548 5714167.451 7084617.179 6540213.325 6369341.183 6318442.122 7280598.392 5890530.531 1.091897651 1.176300206 1.411940148 0.970059899 1.202712921 1.110292747 1.081284809 1.072643982 1.235983475 1 22.48996615 -5.27963849 24.99446724 1.103577845 1.221671469 0.239017217 0.106073274 1231.273742 1691016.244 0.029247359 0.043472961 5.25E-06 5.27963849 0.118093625 SGSS(ph)QELDVKPSAS(ph)PQER ddPTM_HeLa_A485_30min_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.215)GS(0.345)S(0.44)QELDVKPS(0.014)AS(0.986)PQER 122.49 7.11E-05 383380000 401200 373510 240810 585990 380610 378010 566440 471300 278320 693340 TRUE FALSE FALSE 490445.5559 417188.7454 329895.6399 618001.1499 342715.132 397802.0191 445415.4666 355712.936 334176.2711 520503.098 0.942252905 0.80151059 0.633801492 1.187315027 0.658430533 0.76426446 0.85574028 0.68340215 0.642025518 1 18.98954722 SGSS(ph)QELDVKPSASPQER ddPTM_HeLa_A485_30min_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.002)GS(0.033)S(0.964)QELDVKPSASPQER 245.3 2.02E-44 189610000 155920 142620 107620 226840 194710 169910 251050 208510 156280 306360 TRUE FALSE FALSE 190603.8661 159298.1684 147433.1164 239231.6948 175323.9887 178806.2249 197411.1166 157372.5956 187643.9625 229990.0901 0.828748169 0.692630575 0.64104117 1.040182621 0.762311057 0.777451867 0.858346186 0.684258159 0.815878469 1 17.81121217 -11.52920191 1.658131019 2.606727168 0.787022311 0.26123539 0.106411418 1865059.329 117010.8893 11211942.1 0.028154042 2.96E-12 11.52920191 -1.819704857 SGSS(ph)S(ph)PDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 4 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 S(0.06)GS(0.12)S(0.823)S(0.992)PDS(0.004)EITELKFPSINHD;S(0.357)GS(0.4)S(0.44)S(0.787)PDS(0.016)EIT(0.001)ELKFPSINHD;S(0.017)GS(0.059)S(0.936)S(0.984)PDS(0.003)EITELKFPSINHD;S(0.064)GS(0.157)S(0.775)S(0.941)PDS(0.063)EIT(0.001)ELKFPSINHD ;;; 128.01 1.54E-06 4289020000 593460 583260 349199 83788 638300 589088 706830 719080 511279 529234 TRUE FALSE FALSE 551861.5186 537040.3534 484418.2047 195062.6984 558238.4621 516412.312 529973.6579 555361.1814 555597.0754 396710.3617 1.391094289 1.353734123 1.221087855 0.491700538 1.407168847 1.301736385 1.335920886 1.399915997 1.400510622 1 18.59772655 SGSS(ph)SPDSEITELK ddPTM_HeLa_A485_30min_R1 1 SGSSSPDSEITELK 14 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.043)GS(0.043)S(0.457)S(0.457)PDSEITELK 89.013 0.0009369 0 774160 470580 390020 1190100 703040 551730 802520 603450 599580 1587200 TRUE FALSE FALSE 946369.2212 525610.2375 534304.6281 1255112.15 633042.8691 580617.7297 631055.046 455452.9413 719910.2063 1191540.25 0.794240246 0.441118323 0.44841509 1.053352708 0.531281146 0.487283354 0.529612865 0.382238822 0.604184547 1 20.18439626 -10.54583173 6.42988397 1.000505775 0.579073047 0.299745603 0.189702702 0.001397911 9.87E-05 0.186682183 0.045225288 2.85E-11 10.54583173 -0.421432728 SGSS(ph)SPDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.09)GS(0.074)S(0.418)S(0.418)PDSEITELKFPSINHD 113.65 3.75E-05 127230000 75454 93729 71859 33570 77185 137680 67526 137710 113760 33916 TRUE FALSE FALSE 92238.48199 104689.7912 98442.6344 35403.8441 69500.19039 144888.7119 53098.51846 103936.4066 136590.5885 25461.36538 3.62268404 4.111711594 3.866353314 1.390492755 2.729633284 5.6905319 2.085454479 4.082122268 5.364621516 1 14.63602217 SGSS(ph)SPDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.067)GS(0.059)S(0.436)S(0.436)PDS(0.003)EITELKFPSINHD 210.88 2.85E-27 8916000000 692510 691970 441800 16227 711700 622530 783130 652780 529710 546300 TRUE FALSE FALSE 643968.6251 637135.7771 612876.7918 37777.27607 622431.9497 545728.578 587182.5909 504156.2441 575625.6893 409502.9242 1.572561726 1.555876013 1.496635935 0.092251542 1.519969487 1.332661004 1.433891082 1.231141988 1.405669301 1 18.64351423 SGSSFVHQAS(ph)FK ddPTM_HeLa_A485_30min_R1 2 SGSSFVHQASFK 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SGSSFVHQAS(1)FK;SGSSFVHQAS(1)FK ; 112.24 0.00026653 712850000 1786540 1620430 1317550 1727430 2220900 1137910 2312300 1961940 995910 2061210 TRUE FALSE FALSE 2183949.66 1809925.193 1804966.573 1821795.127 1999779.398 1197489.208 1818258.215 1480771.139 1195780.002 1547388.281 1.411377924 1.169664534 1.166460025 1.177335482 1.292357854 0.773877651 1.175049752 0.956948658 0.772773076 1 20.56140382 -6.023233446 0.603003988 0.904292338 1.30484317 0.493640533 0.141899773 0.791802982 0.629534219 0.107881834 0.155642591 9.48E-07 6.023233446 0.400550832 SGSSFVHQAS(ph)FK ddPTM_HeLa_A486_30min_R1 2 SGSSFVHQASFK 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SGSSFVHQAS(1)FK;SGSSFVHQAS(1)FK ; 123.72 3.40E-05 762410000 1755290 1488020 878430 312880 1458570 2036290 2328990 2318140 1658350 1536930 TRUE FALSE FALSE 1632253.235 1370103.876 1218581.621 728400.4521 1275622.55 1785073.243 1746252.068 1790350.127 1802097.113 1152072.724 1.416797048 1.189251205 1.057729773 0.632252146 1.107241343 1.549444931 1.515748122 1.55402527 1.564221664 1 20.13580036 -6.215988978 6.545856881 1.476159949 1.058408997 0.347739118 0.240080674 0.23359076 26.32686246 0.082036964 0.081332032 6.08E-07 6.215988978 -0.417750952 SGSSHAPQDVSLSYPQHHVGNS(ph)SPTSTSPSR ddPTM_HeLa_A485_30min_R1 1 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSR 31 0 F5GY08;Q9Y580 F5GY08 RBM7 RNA-binding protein 7 1 0 SGSSHAPQDVSLSYPQHHVGNS(0.537)S(0.358)PT(0.081)S(0.019)T(0.004)S(0.001)PSR 197.26 4.53E-29 147710000 20093 56803 60608 7555 66831 28084 36152 37965 38791 21511 TRUE FALSE FALSE 24562.61853 63445.61673 83029.42131 7967.71052 60177.07098 29554.43481 28427.82987 28654.02422 46575.99789 16148.70358 1.521027271 3.928836542 5.14155337 0.493396295 3.726433561 1.830142876 1.760378455 1.774385422 2.884194242 1 13.97913073 -5.262423621 24.99976451 2.020755579 3.570308732 0.276555688 1.182851172 118.7997671 3017543.808 0.321015239 0.508595685 5.46E-06 5.262423621 1.549553154 SGSSHAPQDVSLSYPQHHVGNS(ph)SPTSTSPSSR ddPTM_HeLa_A485_30min_R1 2 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSR 32 0 I3L521;F5GXV8;J3KPD3 I3L521 RBM7 1 0 SGSSHAPQDVSLSYPQHHVGNS(0.584)S(0.408)PT(0.004)S(0.001)T(0.002)SPSSR;SGSSHAPQDVSLSY(0.001)PQHHVGNS(0.448)S(0.328)PT(0.068)S(0.068)T(0.068)S(0.014)PS(0.003)S(0.003)R ; 181.44 5.43E-21 519570000 177187 443590 515030 103377 535030 225091 314420 341970 302120 182682 TRUE FALSE FALSE 216601.6369 495463.9918 705561.0292 109024.2237 481760.5346 236876.4167 247241.5984 258101.3213 362752.7128 137142.7394 1.579388291 3.612761375 5.144720254 0.794968981 3.512840247 1.727225355 1.802804869 1.881990417 2.645074135 1 17.06531872 -5.273242105 24.90378696 2.00081561 3.462337239 0.295355438 1.080911861 895.5735612 1889661.278 0.298986359 0.447572691 5.33E-06 5.273242105 1.461521629 SGSSQELDVKPSAS(ph)PQER ddPTM_HeLa_A485_30min_R1 2 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SGSSQELDVKPS(0.003)AS(0.997)PQER;SGSSQELDVKPS(0.001)AS(0.999)PQER ; 180.66 5.03E-18 2537000000 2715500 2529070 1666990 3197100 2783500 2553470 3654000 3321200 2157770 4152600 TRUE FALSE FALSE 3319553.607 2824822.737 2283678.97 3371749.478 2506364.967 2687165.741 2873293.05 2506670.493 2590814.647 3117433.243 1.064835507 0.906137362 0.732551042 1.081578727 0.803983525 0.861980203 0.92168551 0.80408153 0.831073016 1 21.57192724 -4.288578798 4.465930611 0.874855774 1.073741204 0.244002899 0.096546985 0.235576912 11.10033395 0.02294778 0.137779489 5.15E-05 4.288578798 0.198885429 SGSSQELDVKPSAS(ph)PQER ddPTM_HeLa_A486_30min_R1 3 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SGSSQELDVKPS(0.006)AS(0.994)PQER;SGSSQELDVKPS(0.014)AS(0.986)PQER;SGSSQELDVKPS(0.02)AS(0.98)PQER ;; 158.05 2.37E-09 328870000 2279960 1980060 869120 807830 1459120 2047970 2250830 2069820 1441370 3029860 TRUE FALSE FALSE 2120146.578 1823152.834 1205666.54 1880669.065 1276103.564 1795312.284 1687648.527 1598567.17 1566309.112 2271163.335 0.933506871 0.802739638 0.530858579 0.828064207 0.561872211 0.790481361 0.743076687 0.7038539 0.68965058 1 21.11500003 -11.94554018 17.23564962 0.992111935 0.742035245 0 0.140676077 0 0 0 0.030402852 1.13E-12 11.94554018 -0.25007669 SGSSS(ph)PDSEITELK ddPTM_HeLa_A485_30min_R1 2 SGSSSPDSEITELK 14 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 SGS(0.001)S(0.081)S(0.917)PDSEITELK;SGSS(0.012)S(0.988)PDSEITELK ; 215.51 6.75E-23 531140000 457800 309060 274730 696680 468660 359450 534010 423000 382690 910720 TRUE FALSE FALSE 559636.0306 345201.8785 376364.0595 734737.8643 421998.5648 378270.2462 419914.401 319258.5868 459492.3728 683694.2646 0.818547207 0.504906793 0.55048591 1.074658517 0.617232858 0.553273979 0.614184472 0.466961043 0.672072879 1 19.3829918 -8.050377441 21.64724229 1.000000004 0.645454054 0.276513918 0.168843518 3701.207816 1590412.543 0.167233589 0.043179527 8.90E-09 8.050377441 -0.35454595 SGSSS(ph)PDSEITELK ddPTM_HeLa_A486_30min_R1 3 SGSSSPDSEITELK 14 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 SGS(0.002)S(0.157)S(0.841)PDSEITELK;S(0.001)GS(0.009)S(0.09)S(0.899)PDSEITELK;SGSSS(1)PDSEITELK ;; 300.33 3.50E-58 2017580000 3528660 4002400 1985160 1634670 3185060 4696200 5062500 4541000 3491190 5409200 TRUE FALSE FALSE 3281319.156 3685235.248 2753867.116 3805594.372 2785560.075 4116830.591 3795808.954 3507113.429 3793809.16 4054701.112 0.809262894 0.90887963 0.67917882 0.938563476 0.686995169 1.015322826 0.936150125 0.864949927 0.935656922 1 21.95116414 -6.27537789 24.99918959 0.941083712 0.810847877 0.417078576 0.085693045 874.0710348 1567671.36 0.028599868 0.025347159 5.30E-07 6.27537789 -0.130235836 SGSSS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A485_30min_R1 8 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 SGS(0.003)S(0.083)S(0.675)PDS(0.239)EITELKFPSINHD;S(0.004)GS(0.014)S(0.128)S(0.728)PDS(0.126)EITELKFPSINHD;S(0.001)GS(0.003)S(0.104)S(0.866)PDS(0.026)EITELKFPSINHD;SGS(0.004)S(0.029)S(0.738)PDS(0.227)EIT(0.001)ELKFPSINHD;S(0.003)GS(0.021)S(0.164)S(0.812)PDSEITELKFPSINHD;S(0.005)GS(0.023)S(0.153)S(0.813)PDS(0.006)EITELKFPSINHD;S(0.007)GS(0.026)S(0.136)S(0.736)PDS(0.094)EITELKFPSINHD;S(0.002)GS(0.015)S(0.138)S(0.845)PDSEITELKFPSINHD ;;;;;;; 271.55 8.74E-73 44706310000 4920440 5908760 4765190 3888160 8277620 6011080 8508760 9304450 5921340 7578837 TRUE FALSE FALSE 6014974.903 6599738.083 6528032.077 4100560.335 7453471.088 6325810.854 6690793.916 7022519.049 7109698.624 5689572.414 1.057192784 1.159970838 1.147367781 0.720715027 1.310023064 1.111825352 1.175974824 1.234278877 1.249601571 1 22.4398888 SGSSS(ph)PDSEITELKFPSINHD ddPTM_HeLa_A486_30min_R1 7 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 SGS(0.015)S(0.102)S(0.736)PDS(0.146)EITELKFPSINHD;SGS(0.001)S(0.005)S(0.925)PDS(0.07)EITELKFPSINHD;S(0.001)GS(0.01)S(0.079)S(0.645)PDS(0.265)EITELKFPSINHD;S(0.005)GS(0.021)S(0.11)S(0.798)PDS(0.066)EITELKFPSINHD;S(0.005)GS(0.025)S(0.183)S(0.785)PDS(0.003)EITELKFPSINHD;S(0.004)GS(0.022)S(0.166)S(0.807)PDS(0.001)EITELKFPSINHD;S(0.004)GS(0.023)S(0.153)S(0.818)PDS(0.002)EITELKFPSINHD ;;;;;; 254.61 4.67E-59 24042550000 2364920 2283607 1666546 301150 2675640 2206271 2774323 2714127 2137893 1782622 TRUE FALSE FALSE 2199151.32 2102645.665 2311877.243 701092.4193 2340036.282 1934083.716 2080158.042 2096179.531 2323207.287 1336241.848 1.645773423 1.573551724 1.730133842 0.524674796 1.751207152 1.447405437 1.556722718 1.56871268 1.738612879 1 20.34974972 SGSSSPDS(ph)EITELKFPSINHD ddPTM_HeLa_A485_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.024)GS(0.024)S(0.081)S(0.285)PDS(0.581)EIT(0.005)ELKFPSINHD 76.744 0.0019846 253330000 94960 137480 96085 27187 116540 207310 91120 159900 144440 26876 TRUE FALSE FALSE 116083.5244 153557.0901 131630.8399 28672.15697 104936.8684 218164.431 71651.46762 120684.2743 173427.7831 20176.30782 5.753457245 7.610762657 6.524030121 1.421080469 5.20099462 10.8129016 3.551267569 5.98148459 8.595615447 1 14.30037457 -2.982521181 20.76917666 5.818174021 6.167671652 0 2.906423193 0 0 0.649759448 0 0.001041067 2.982521181 0.349497631 SGSSSPDS(ph)EITELKFPSINHD ddPTM_HeLa_A486_30min_R1 2 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.001)GS(0.005)S(0.027)S(0.353)PDS(0.614)EITELKFPSINHD;S(0.007)GS(0.021)S(0.085)S(0.277)PDS(0.601)EIT(0.009)ELKFPSINHD ; 135.55 2.98E-07 459890000 249740 477370 484260 29629 611740 287410 167562 331210 373610 69043 TRUE FALSE FALSE 232234.5157 439541.4626 671778.4409 68977.80937 535009.865 251952.2764 125636.2153 255800.7133 405994.8156 51754.18341 4.487260746 8.492868281 12.98017661 1.332796787 10.33751921 4.868249478 2.427556712 4.942609398 7.844676293 1 15.65938786 -6.494356473 23.00241766 4.277353007 7.545175135 0.196223957 3.369127253 461.9826831 372576.6979 1.167476033 1.02676707 3.20E-07 6.494356473 3.267822127 SGSTS(ph)PLGFAR ddPTM_HeLa_A485_30min_R1 2 SGSTSPLGFAR 11 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 SGST(0.009)S(0.991)PLGFAR;SGST(0.008)S(0.992)PLGFAR ; 193.04 4.78E-11 788670000 941240 1298060 1180840 1029670 1452560 1092280 1458150 1430870 985840 1471890 TRUE FALSE FALSE 1150615.591 1449856.825 1617681.855 1085918.265 1307938.026 1149470.092 1146604.341 1079946.889 1183689.045 1104974.911 1.04130472 1.312117416 1.463998719 0.982753775 1.183681198 1.040268046 1.037674547 0.977349692 1.071236128 1 20.07558218 -5.282354658 24.99096208 1.046577645 1.276438027 0.47687677 0.110589201 674.1160436 805476.7812 0.031449271 0.04670149 5.22E-06 5.282354658 0.229860382 SGSTS(ph)PLGFAR ddPTM_HeLa_A486_30min_R1 2 SGSTSPLGFAR 11 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 SGST(0.003)S(0.997)PLGFAR;SGS(0.003)T(0.092)S(0.904)PLGFAR ; 189.56 9.04E-11 235160000 1425420 1498130 1099140 479090 1546410 1286890 1526080 1492520 1159160 1501400 TRUE FALSE FALSE 1325505.419 1379412.723 1524756.444 1115345.732 1352444.838 1128126.596 1144238.643 1152705.777 1259636.922 1125439.668 1.177766749 1.225665633 1.354809581 0.991031118 1.201703545 1.002387448 1.016703672 1.024227074 1.119239848 1 20.10205729 -5.26887333 24.99641116 1.054620825 1.250039154 0.609907043 0.07397302 375.6860447 1263230.789 0.020606484 0.0312682 5.38E-06 5.26887333 0.195418329 SGSYS(ph)GRSPS(ph)PYGR ddPTM_HeLa_A485_30min_R1 1 SGSYSGRSPSPYGR 14 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.001)GS(0.012)YS(0.976)GRS(0.012)PS(0.998)PY(0.002)GR 102.64 0.0021028 277940000 301130 410160 390230 377890 570650 451510 564400 618210 396880 521150 TRUE FALSE FALSE 368115.3296 458124.6441 534592.3158 398533.1738 513834.0823 475150.3654 443811.3293 466593.0282 476530.1756 391236.8961 0.940901365 1.170964826 1.366415901 1.018649258 1.313357936 1.214482505 1.134380049 1.192609984 1.218009294 1 18.57768291 -4.270370412 5.349053549 1.192227645 0.932159393 0.304402298 0.108035211 0.158007643 16.32471813 0.025053129 0.149117597 5.37E-05 4.270370412 -0.260068252 SGSYS(ph)GRSPS(ph)PYGR ddPTM_HeLa_A486_30min_R1 2 SGSYSGRSPSPYGR 14 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 SGS(0.003)YS(0.827)GRS(0.17)PS(0.999)PYGR;S(0.003)GS(0.019)Y(0.002)S(0.804)GRS(0.176)PS(0.993)PY(0.003)GR ; 121.23 0.00012342 396680000 991720 1069040 997510 431740 1453850 1017240 1358520 1392880 953480 1100550 TRUE FALSE FALSE 922205.5492 984325.377 1383772.586 1005112.539 1271494.576 891743.2713 1018603.927 1075751.63 1036128.414 824965.1166 1.117872175 1.19317212 1.677371029 1.218369745 1.541270717 1.08094664 1.234723634 1.303996507 1.255966335 1 19.65397359 -6.27926374 24.91842443 1.197851231 1.351837814 0.192469522 0.175613421 1589.517572 2222136.491 0.061989824 0.054782842 5.26E-07 6.27926374 0.153986583 SGSYS(ph)YLEER ddPTM_HeLa_A485_30min_R1 1 SGSYSYLEER 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 S(0.002)GS(0.191)YS(0.808)YLEER 161.22 5.80E-07 288460000 415920 482600 578140 336500 788080 502690 585520 644580 609210 480810 TRUE FALSE FALSE 508439.9691 539035.8719 792018.0444 354882.1429 709615.9881 529010.0711 460418.8687 486495.7443 731472.859 360952.9157 1.408604688 1.493368937 2.194241991 0.983181261 1.965951672 1.465593013 1.275564897 1.347809432 2.026504919 1 18.46145113 -6.497427884 24.76836766 1.431328838 1.611919112 0.055442097 0.385572069 2369.980097 2306430.983 0.131259549 0.115294165 3.18E-07 6.497427884 0.180590274 SGSYSGRS(ph)PS(ph)PYGR ddPTM_HeLa_A485_30min_R1 1 SGSYSGRSPSPYGR 14 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.043)GS(0.282)Y(0.04)S(0.073)GRS(0.577)PS(0.984)PYGR 173.77 9.02E-12 294550000 284940 397330 361120 324770 537740 409270 544420 591690 359190 471530 TRUE FALSE FALSE 348323.92 443794.2872 494713.3155 342511.3627 484200.7175 430698.7443 428100.2195 446577.0998 431276.1383 353986.2489 0.984004099 1.253704879 1.397549529 0.967583808 1.367851771 1.216710383 1.209369632 1.261566237 1.218341503 1 18.43333379 -9.939765977 4.02069761 0.999989302 1.214834754 0.181415581 0.132270601 33833359.26 70677696.96 5688.090589 0.030898218 1.15E-10 9.939765977 0.214845452 SGSYSGRS(ph)PS(ph)PYGR ddPTM_HeLa_A486_30min_R1 1 SGSYSGRSPSPYGR 14 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 SGSYS(0.409)GRS(0.598)PS(0.991)PY(0.001)GR 112.24 0.00097425 326520000 534480 568420 455850 196950 703850 530760 652100 694920 538570 526190 TRUE FALSE FALSE 497015.7121 523376.329 632367.3281 458509.5533 615566.5699 465280.2276 488937.6828 536701.886 585253.6812 394428.5991 1.260090453 1.326922871 1.60324918 1.162465284 1.560653997 1.179631063 1.239610119 1.36070733 1.483801333 1 18.58940464 -5.303658201 24.99895646 1.304217138 1.389772106 0.073305081 0.17317009 1624.116147 961681.6391 0.047355335 0.070239657 4.97E-06 5.303658201 0.085554968 SGT(ph)FDLLEMDR ddPTM_HeLa_A485_30min_R1 4 SGTFDLLEMDR 11 0 H0YA31;H0YA26;E9PHT6;Q9NVE7 H0YA31 PANK4 Pantothenate kinase 4 1 0 S(0.004)GT(0.996)FDLLEMDR;S(0.001)GT(0.999)FDLLEMDR;S(0.001)GT(0.999)FDLLEMDR;S(0.265)GT(0.735)FDLLEMDR ;;; 256.43 8.67E-30 198594000 229384 195300 151823 306374 195366 238633 386891 369422 209690 577165 TRUE FALSE FALSE 280409.6794 218138.6361 207988.6456 323110.4358 175914.6751 251127.4549 304228.5772 278820.6753 251772.8596 433288.3874 0.647166385 0.503449071 0.480023586 0.745716814 0.405999053 0.579585011 0.702138774 0.643499072 0.581074561 1 18.72496805 -14 0.240196216 3.388176729 0.54433452 0.625917706 0.096624434 109.2544993 1.090640608 127.2367763 0.150964511 1.00E-14 14 -2.843842208 SGT(ph)FDLLEMDR ddPTM_HeLa_A486_30min_R1 4 SGTFDLLEMDR 11 0 H0YA31;H0YA26;E9PHT6;Q9NVE7 H0YA31 PANK4 Pantothenate kinase 4 1 0 S(0.007)GT(0.993)FDLLEMDR;S(0.006)GT(0.994)FDLLEMDR;S(0.002)GT(0.998)FDLLEMDR;S(0.133)GT(0.867)FDLLEMDR ;;; 252.59 1.73E-26 435830000 457899 468152 257876 235158 373948 483829 606533 510080 428119 894850 TRUE FALSE FALSE 425802.6447 431053.9305 357732.4934 547459.7082 327043.9549 424139.0972 454772.0281 393945.919 465228.6996 670773.7355 0.634793258 0.642621957 0.533313209 0.816161515 0.487562255 0.632313215 0.677981269 0.587300752 0.693570238 1 19.35546667 -8.142848396 4.66349432 0.999990524 0.627908689 0.644925151 0.082802806 0.736142769 23.42602964 0.074865184 0.019546826 7.20E-09 8.142848396 -0.372081835 SGT(ph)PPRQGS(ph)ITS(ph)PQANEQS(ph)VTPQRR ddPTM_HeLa_A486_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.288)GT(0.726)PPRQGS(0.769)IT(0.454)S(0.803)PQANEQS(0.521)VT(0.439)PQRR 46.68 0.019153 588360000 159570 167530 94606 94653 193760 198490 282370 246580 135350 286190 TRUE FALSE FALSE 148384.967 154254.3127 131239.9768 220356.9675 169456.8141 174002.3219 211718.0394 190439.1168 147082.247 214526.1612 0.691687047 0.719046627 0.611766771 1.027179931 0.789912117 0.811100711 0.986910119 0.887719781 0.685614501 1 17.71079407 -5.245767846 24.95039335 0.876706431 0.67865479 0.467838594 0.102341872 742.0704505 1181436.387 0.027283919 0.047053735 5.68E-06 5.245767846 -0.198051641 SGT(ph)PPRQGS(ph)ITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 3 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.207)GT(0.726)PPRQGS(0.404)IT(0.34)S(0.334)PQANEQS(0.188)VT(0.801)PQRR;S(0.221)GT(0.759)PPRQGS(0.477)IT(0.375)S(0.17)PQANEQS(0.147)VT(0.852)PQRR;S(0.173)GT(0.79)PPRQGS(0.383)IT(0.332)S(0.321)PQANEQS(0.159)VT(0.842)PQRR ;; 76.853 0.0043765 4845200000 527960 629480 494080 860570 917750 688350 1080420 1109160 579160 1176070 TRUE FALSE FALSE 645402.8806 703092.2103 676860.7524 907580.76 826375.5876 724390.9416 849579.4408 837136.7709 695392.0996 882897.393 0.731005534 0.796346456 0.766635804 1.027957232 0.935981456 0.820470133 0.96226294 0.948169943 0.787625046 1 19.75188626 -5.230988947 23.95888419 0.921428526 0.767830895 0.519751006 0.070980862 346.842977 272900.4916 0.019060852 0.033007602 5.88E-06 5.230988947 -0.153597631 SGT(ph)PPRQGS(ph)ITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.168)GT(0.832)PPRQGS(0.373)IT(0.373)S(0.37)PQANEQS(0.177)VT(0.709)PQRR 52.777 0.020375 1466900000 133380 116210 110410 99591 152100 162580 196610 195430 121510 225900 TRUE FALSE FALSE 124030.7508 107001.0964 153163.7089 231852.8811 133022.1997 142522.5326 147416.0985 150934.8552 132042.5846 169333.1696 0.732465772 0.631896849 0.904510966 1.369211251 0.785564931 0.841669313 0.870568352 0.891348432 0.779779797 1 17.36950508 -4.805101801 7.293380753 0.932431539 0.682450962 0.275448723 0.16112183 0.25140919 33.91137428 0.044167714 0.094521714 1.57E-05 4.805101801 -0.249980577 SGT(ph)PPRQGSIT(ph)S(ph)PQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.216)GT(0.795)PPRQGS(0.627)IT(0.685)S(0.675)PQANEQS(0.408)VT(0.595)PQRR 60.18 0.0092423 646570000 219680 208490 183170 391580 297910 237050 358030 349080 188880 476950 TRUE FALSE FALSE 268547.0581 232871.0919 250932.2053 412971.0239 268249.0344 249461.5715 281533.9657 263467.5827 226786.4835 358055.1426 0.750015923 0.650377733 0.700820001 1.153372692 0.749183582 0.696712718 0.786286614 0.735829629 0.633384238 1 18.44982226 -11.33946161 2.306819633 2.421039001 0.765898015 0.209698834 0.138533261 6592334.721 721427.0977 49346425.24 0.037962653 4.58E-12 11.33946161 -1.655140986 SGT(ph)PPRQGSIT(ph)SPQANEQS(ph)VTPQRR ddPTM_HeLa_A486_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.112)GT(0.646)PPRQGS(0.362)IT(0.44)S(0.44)PQANEQS(0.66)VT(0.34)PQRR 90.336 0.0032479 1815200000 1583000 1477200 815900 870710 1246400 1729600 2243800 1952300 1469200 2912600 TRUE FALSE FALSE 1472039.875 1360141.292 1131838.331 2027056.883 1090064.89 1516219.537 1682377.508 1507803.908 1596551.439 2183266.002 0.674237529 0.622984689 0.518415223 0.928451632 0.499281759 0.694473113 0.770578347 0.690618508 0.731267485 1 21.05805648 -14 0.18271957 2.352161521 0.614606005 0.440601386 0.112544275 123.5885147 1.195112621 60.44056241 0.327806977 1.00E-14 14 -1.737555516 SGT(ph)PPRQGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 2 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.41)GT(0.584)PPRQGS(0.078)IT(0.383)S(0.545)PQANEQS(0.35)VT(0.65)PQRR;S(0.201)GT(0.751)PPRQGS(0.354)IT(0.356)S(0.398)PQANEQS(0.274)VT(0.667)PQRR ; 106.89 0.00042693 2811100000 268730 313140 265100 399670 415450 344720 524970 477420 290880 530170 TRUE FALSE FALSE 328508.0614 349758.999 363171.5217 421502.9601 374086.3393 362769.0062 412805.8709 360331.9964 349256.9479 398008.3761 0.825379769 0.878772961 0.912472057 1.059030376 0.939895645 0.911460733 1.037178853 0.905337722 0.877511552 1 18.60243927 -4.740444368 2.557399076 0.958658802 0.837787178 0.381884067 0.055868372 0.306779695 3.924852671 0.015465506 0.051654745 1.82E-05 4.740444368 -0.120871624 SGT(ph)PPRQGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.152)GT(0.82)PPRQGS(0.302)IT(0.266)S(0.466)PQANEQS(0.362)VT(0.632)PQRR 66.381 0.0074162 1686700000 361430 365850 229700 265600 341740 425660 570770 507640 264260 587370 TRUE FALSE FALSE 336095.6234 336858.7136 318645.9916 618330.2227 298875.7826 373146.397 427957.309 392061.4537 287166.2696 440288.7289 0.763352776 0.765085935 0.723720529 1.404374407 0.678817701 0.847503859 0.971992424 0.890464434 0.652222623 1 18.74809039 SGT(ph)PPRQGSITSPQANEQS(ph)VTPQRR ddPTM_HeLa_A485_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.191)GT(0.804)PPRQGS(0.004)IT(0.003)S(0.002)PQANEQS(0.824)VT(0.173)PQRR 75.186 0.0068304 1003700000 226460 232130 167900 302760 364660 269540 446550 454880 208500 435730 TRUE FALSE FALSE 276835.2457 259275.5842 230013.1969 319299.0122 328353.17 283652.6976 351140.9445 343319.9668 250344.0375 327110.53 0.846304904 0.792623778 0.703166593 0.976119638 1.003798838 0.867146336 1.073462675 1.049553393 0.765319409 1 18.31941868 -5.275421955 24.48320705 0.966673434 0.781890962 0.457802489 0.090422445 505.4309459 884998.382 0.025234243 0.037656047 5.30E-06 5.275421955 -0.184782471 SGT(ph)PPRQGSITSPQANEQS(ph)VTPQRR ddPTM_HeLa_A486_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.215)GT(0.764)PPRQGS(0.015)IT(0.011)S(0.014)PQANEQS(0.719)VT(0.262)PQRR 75.384 0.0067682 755130000 157460 165440 101800 115080 223350 170990 261240 252030 135060 287260 TRUE FALSE FALSE 146422.8671 152329.9319 141219.6863 267912.0558 195335.3603 149894.9923 195874.9889 194648.2708 146767.1095 215328.2263 0.679998483 0.707431323 0.655834531 1.244203143 0.907151671 0.696123285 0.909657746 0.903960777 0.68159717 1 17.71617792 SGT(ph)PPRQGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.144)GT(0.855)PPRQGS(0.007)IT(0.006)S(0.008)PQANEQS(0.278)VT(0.702)PQRR 68.741 0.011307 1312500000 155390 172770 132850 215930 231950 227660 317310 329690 182440 323330 TRUE FALSE FALSE 189955.9694 192973.9486 181996.7433 227725.7091 208856.2436 239579.9256 249514.1263 248833.0106 219054.0346 242729.7814 0.782582048 0.795015541 0.749791568 0.938186109 0.860447541 0.9870232 1.027950196 1.02514413 0.902460478 1 17.8889916 -5.65577833 1.094571366 0.992583562 0.770958331 0.750556173 0.049828008 0.246896174 0.621194959 0.020820441 0.03540609 2.21E-06 5.65577833 -0.221625232 SGT(ph)PPRQGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 2 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.174)GT(0.815)PPRQGS(0.007)IT(0.007)S(0.001)PQANEQS(0.045)VT(0.95)PQRR;S(0.391)GT(0.6)PPRQGS(0.003)IT(0.005)SPQANEQS(0.138)VT(0.862)PQRR ; 132.28 4.50E-06 3060200000 332974 302335 192249 225825 370460 331994 509250 495060 242353 531140 TRUE FALSE FALSE 309634.2421 278376.8735 266692.9614 525732.0126 323993.4524 291035.9557 381830.2637 382345.6451 263360.3532 398139.0869 0.777703703 0.699195037 0.669848729 1.320473246 0.813769517 0.730990665 0.959037372 0.960331848 0.661478267 1 18.60291299 SGT(ph)PPRQGSITSPQANEQSVTPQR ddPTM_HeLa_A486_30min_R1 2 SGTPPRQGSITSPQANEQSVTPQR 24 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.009)GT(0.967)PPRQGS(0.016)IT(0.007)S(0.002)PQANEQSVTPQR;S(0.047)GT(0.935)PPRQGS(0.014)IT(0.004)S(0.001)PQANEQSVTPQR ; 121.7 3.83E-05 810730000 130335 123230 116980 39498 184220 125246 174710 178885 115769 111658 TRUE FALSE FALSE 121199.1896 113464.806 162277.7888 91953.34012 161113.4098 109794.4219 130995.7101 138156.7905 125803.9501 83698.11003 1.448051688 1.355643586 1.938846514 1.098631022 1.924934861 1.311790934 1.565097588 1.650656036 1.503067991 1 16.35290743 -8.05486001 21.01033081 0.999999997 1.538425776 0.296333736 0.246858794 2900.825559 1110960.841 0.217727278 0.056216942 8.81E-09 8.05486001 0.538425779 SGT(ph)PPRQGSITSPQANEQSVTPQRR ddPTM_HeLa_A485_30min_R1 2 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.035)GT(0.965)PPRQGSITSPQANEQSVTPQRR;S(0.035)GT(0.964)PPRQGS(0.001)ITSPQANEQSVTPQRR ; 125.49 7.34E-06 2333600000 200305 341670 271210 218080 364060 374520 441440 523730 288770 299440 TRUE FALSE FALSE 244862.1562 381625.3344 371541.865 229993.1582 327812.9081 394129.2881 347122.7378 395284.3963 346723.4902 224795.1188 1.089268119 1.697658456 1.652802192 1.023123453 1.458274138 1.753282234 1.544173822 1.758420728 1.542397771 1 17.77825118 -6.008689786 24.92630742 1.572720823 1.388775966 0.044411084 0.280241929 1067.232704 3061322.48 0.087112617 0.093997383 9.80E-07 6.008689786 -0.183944857 SGT(ph)PPRQGSITSPQANEQSVTPQRR ddPTM_HeLa_A486_30min_R1 2 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.027)GT(0.969)PPRQGS(0.004)ITSPQANEQSVTPQRR;S(0.185)GT(0.815)PPRQGSITSPQANEQSVTPQRR ; 98.94 0.001566 1694670000 194791 169800 152922 110148 234070 143197 229050 241800 128904 234180 TRUE FALSE FALSE 181137.1568 156344.4296 212137.4938 256430.1106 204710.758 125530.8101 171739.2674 186747.4185 140077.5025 175539.8037 1.031886518 0.89064945 1.208486561 1.460808917 1.166178574 0.715113082 0.978349432 1.063846572 0.797981424 1 17.42143867 -6.219546871 24.00856869 0.919254174 1.157443185 0.348937345 0.163998679 402.5183078 230682.6247 0.059055338 0.059054627 6.03E-07 6.219546871 0.238189011 SGT(ph)PTQDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_A485_30min_R1 2 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.013)GT(0.986)PTQDEMMDKPTSSSVDTMSLLSK;S(0.001)GT(0.99)PT(0.009)QDEMMDKPTSSSVDTMSLLSK ; 288.07 1.19E-76 3511900000 1819410 930810 774680 3530800 1938320 1625970 3005600 2762200 1212030 4862300 TRUE FALSE FALSE 2224131.478 1039660.133 1061266.369 3723678.664 1745334.055 1711103.275 2363429.007 2084766.119 1455273.304 3650218.094 0.609314682 0.284821374 0.290740537 1.020124981 0.478145144 0.468767408 0.647476108 0.571134673 0.398681193 1 21.79955123 -10.45055054 2.896268478 1.01198041 0.531436131 0.33037614 0.200765411 37069557.91 42429865.77 3612351.874 0.052129128 3.54E-11 10.45055054 -0.480544279 SGT(ph)PTQDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_A486_30min_R1 2 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.151)GT(0.698)PT(0.151)QDEMMDKPTSSSVDTMSLLSK;S(0.118)GT(0.88)PT(0.002)QDEMMDKPTSSSVDTMSLLSK ; 139.91 1.74E-05 646910000 399551 334326 144865 283993 323420 509720 696070 617090 291090 865390 TRUE FALSE FALSE 371544.5382 307832.7902 200960.6076 661150.0562 282853.6478 446835.9289 521905.9237 476592.078 316321.9156 648690.7113 0.572760688 0.474544779 0.309794181 1.019206911 0.436037765 0.688827389 0.804552793 0.734698478 0.487631332 1 19.30717126 -14 0.060421966 2.279046079 0.072970908 0.277055736 0.193130423 533.294148 2.347440515 102.637459 16.86552162 1.00E-14 14 -2.206075171 SGT(ph)TPKPVINSTPGR ddPTM_HeLa_A486_30min_R1 2 SGTTPKPVINSTPGR 15 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 S(0.117)GT(0.442)T(0.442)PKPVINSTPGR;S(0.004)GT(0.498)T(0.498)PKPVINSTPGR ; 89.669 0.0014531 836150000 1318410 1235960 600290 644040 1135820 1349980 1688260 1531730 937410 1842290 TRUE FALSE FALSE 1225996.267 1138018.028 832738.3643 1499357.668 993354.8645 1183433.193 1265839.491 1182988.516 1018665.454 1380968.593 0.887779978 0.824072346 0.603010357 1.085729014 0.719317492 0.856958804 0.916631629 0.8566368 0.737645634 1 20.39724908 -11.00502523 2.421219456 1.171592104 0.8331089 0.144804788 0.122471628 32686490.13 13632735.25 31245754.02 0.029370924 9.88E-12 11.00502523 -0.338483204 SGTAETEPVEQDS(ph)SQPSLPLVR ddPTM_HeLa_A485_30min_R1 1 SGTAETEPVEQDSSQPSLPLVR 22 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SGTAETEPVEQDS(0.576)S(0.423)QPSLPLVR 98.019 0.00061025 89986000 53981 61755 61074 57794 88043 67221 79979 84339 59445 71543 TRUE FALSE FALSE 65988.88722 68976.71005 83667.8141 60951.13988 79277.12978 70740.58762 62890.83328 63654.72801 71375.06624 53708.64675 1.228645501 1.284275703 1.557809015 1.134847805 1.47605897 1.317117297 1.17096291 1.185185847 1.328930639 1 15.71286675 -9.114867797 0.339486899 0.925657216 1.345208539 0.351317945 0.125044085 6.269098669 0.958336803 0.754833441 0.117905489 7.68E-10 9.114867797 0.419551323 SGTAETEPVEQDSS(ph)QPSLPLVR ddPTM_HeLa_A485_30min_R1 1 SGTAETEPVEQDSSQPSLPLVR 22 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SGTAETEPVEQDS(0.193)S(0.805)QPS(0.002)LPLVR 107.65 0.00012342 87346000 59902 84041 81608 85232 109650 79293 93363 115970 75530 108550 TRUE FALSE FALSE 73226.99324 93868.86389 111798.1952 89888.00834 98732.861 83444.65887 73415.23234 87528.17567 90688.1782 81490.48271 0.898595649 1.151899716 1.371917204 1.103049158 1.211587632 1.023980422 0.900905601 1.074090774 1.11286834 1 16.31434396 -6.279670442 21.50110814 1.019408124 1.157667426 0.209761022 0.12046178 211.9743696 249992.8186 0.043914838 0.038859763 5.25E-07 6.279670442 0.138259302 SGTAETEPVEQDSS(ph)QPSLPLVR ddPTM_HeLa_A486_30min_R1 2 SGTAETEPVEQDSSQPSLPLVR 22 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SGTAETEPVEQDS(0.041)S(0.959)QPSLPLVR;SGTAETEPVEQDS(0.03)S(0.97)QPSLPLVR ; 163.74 6.51E-14 200061000 182618 197306 163267 63191 234880 194020 200338 205760 180494 225940 TRUE FALSE FALSE 169817.4212 181670.754 226488.3548 147111.8415 205419.1602 170083.7851 150211.3134 158912.9397 196139.3652 169363.1534 1.002682212 1.072669883 1.337294154 0.868617752 1.212891684 1.00425495 0.886918497 0.938297006 1.158099394 1 17.36976051 -6.49455889 23.82770107 0.984243929 1.098909799 0.125887948 0.132234268 779.3189998 655702.8564 0.045706171 0.040205081 3.20E-07 6.49455889 0.11466587 SGTLKS(ph)PPKGFDTTAINK ddPTM_HeLa_A485_30min_R1 1 SGTLKSPPKGFDTTAINK 18 2 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 S(0.011)GT(0.006)LKS(0.984)PPKGFDTTAINK 168.56 1.46E-12 1115900000 718900 454140 220540 1451000 725450 649050 1482200 1419100 497950 2118600 TRUE FALSE FALSE 878816.8248 507247.7225 302126.9234 1530264.456 653221.6508 683033.2544 1165515.862 1071063.5 597883.9975 1590472.01 0.552550953 0.318929047 0.189960541 0.962144852 0.410709303 0.429453175 0.7328113 0.673424929 0.375916076 1 20.60102355 -14 0.148243332 2.660074875 0.369940998 0.316786147 0.213337016 166.7450814 1.474579897 81.95933555 1.130684214 1.00E-14 14 -2.290133876 SGTNS(ph)PPPPFSDWGR ddPTM_HeLa_A485_30min_R1 5 SGTNSPPPPFSDWGR 15 0 D6RAJ6;Q9UKT5-2;Q9UKT5;D6RAU6;D6REP2 D6RAJ6 FBXO4 F-box only protein 4 1 0 SGTNS(1)PPPPFSDWGR;SGTNS(1)PPPPFSDWGR;SGT(0.002)NS(0.998)PPPPFSDWGR;S(0.001)GT(0.007)NS(0.992)PPPPFSDWGR;S(0.004)GT(0.003)NS(0.993)PPPPFSDWGR ;;;; 179.74 1.04E-17 2365280000 843400 1158540 1076150 1072640 1442930 1071780 1459770 1520820 1083630 1581180 TRUE FALSE FALSE 1031011.42 1294021.175 1474262.667 1131235.607 1299266.823 1127896.744 1147878.214 1147836.51 1301104.601 1187020.925 0.868570552 1.090141839 1.241985407 0.95300393 1.09456101 0.950191121 0.967024414 0.96698928 1.096109237 1 20.17891394 -6.258946262 24.94763535 0.992184742 1.057217742 0.065701427 0.098467551 593.3242165 5937168.855 0.033694877 0.032191789 5.51E-07 6.258946262 0.065033001 SGTNS(ph)PPPPFSDWGR ddPTM_HeLa_A486_30min_R1 6 SGTNSPPPPFSDWGR 15 0 D6RAJ6;Q9UKT5-2;Q9UKT5;D6RAU6;D6REP2 D6RAJ6 FBXO4 F-box only protein 4 1 0 SGTNS(0.999)PPPPFSDWGR;SGTNS(1)PPPPFSDWGR;S(0.012)GT(0.012)NS(0.967)PPPPFS(0.009)DWGR;SGT(0.001)NS(0.999)PPPPFSDWGR;S(0.011)GT(0.009)NS(0.98)PPPPFSDWGR;SGTNS(0.999)PPPPFS(0.001)DWGR ;;;;; 238.88 3.97E-41 2576183000 1781980 1892520 1346866 606472 2037810 1717030 2093730 2043490 1567981 2069310 TRUE FALSE FALSE 1657072.404 1742549.823 1868408.586 1411897.465 1782208.868 1505200.296 1569856.609 1578231.936 1703894.856 1551141.307 1.068292358 1.123398503 1.20453796 0.910231363 1.148966158 0.970382446 1.012065504 1.017464965 1.098478164 1 20.56489869 -5.246633802 24.99868951 1.025901864 1.131208488 0.347379126 0.068705461 930.3337711 1570832.648 0.017797987 0.030660074 5.67E-06 5.246633802 0.105306624 SGTPPRQGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.064)GT(0.261)PPRQGS(0.11)IT(0.124)S(0.45)PQANEQS(0.063)VT(0.928)PQRR 48.831 0.034888 577220000 90336 97710 76925 123950 135350 118210 187800 191620 97101 166470 TRUE FALSE FALSE 110430.9315 109136.3345 105382.7586 130721.0746 121874.0788 124399.2928 147674.9958 144624.8946 116588.28 124972.0927 0.883644734 0.873285645 0.843250332 1.046002126 0.975210354 0.995416578 1.181663783 1.157257524 0.932914522 1 16.93124644 -5.490067103 1.169302849 1.067726475 0.85783962 0.483381569 0.078047531 0.417515766 1.155998833 0.030871858 0.062031106 3.24E-06 5.490067103 -0.209886855 SGTPT(ph)QDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_A485_30min_R1 1 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2;Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.094)GT(0.239)PT(0.665)QDEMMDKPT(0.001)S(0.001)SSVDTMSLLSK 100.83 0.028246 266260000 198400 145470 79995 385780 216030 207080 371380 325150 145470 564080 TRUE FALSE FALSE 242533.3955 162481.4511 109588.4794 406854.1846 194521.2947 217922.3886 292031.6291 245406.4527 174664.4947 423465.2371 0.572735078 0.383694898 0.258789789 0.960773515 0.459355993 0.51461695 0.689623618 0.579519713 0.412464777 1 18.69188402 -11.46382615 2.20912469 5.87524216 0.539444043 0.369759948 0.181374098 5237462.884 305623.1304 128746961.4 0.045359225 3.44E-12 11.46382615 -5.335798117 SGTS(ph)SPQS(ph)PVFR ddPTM_HeLa_A486_30min_R1 1 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 2 0 S(0.002)GT(0.021)S(0.833)S(0.161)PQS(0.983)PVFR 106.6 0.0011071 511720000 595640 795490 676210 289380 942930 785900 866350 943460 646910 690610 TRUE FALSE FALSE 553888.7119 732452.4753 938056.6215 673691.2645 824658.9269 688943.6484 649580.0667 728654.7536 702984.6797 517676.7609 1.069950892 1.414883824 1.812050863 1.301374362 1.592999704 1.330837504 1.254798584 1.407547738 1.357960667 1 18.98169203 -6.501956046 22.23018975 1.289578845 1.451296314 0.141187995 0.205696085 411.526159 437245.1232 0.073087491 0.06358531 3.15E-07 6.501956046 0.161717469 SGTSGKPGDKGNGDAS(ph)PDGR ddPTM_HeLa_A486_30min_R1 1 SGTSGKPGDKGNGDASPDGR 20 2 Q99612;Q99612-3;Q99612-2 Q99612 KLF6 Krueppel-like factor 6 1 0 SGTSGKPGDKGNGDAS(1)PDGR 70.316 0.0021815 79295000 96937 94586 41682 62767 87911 119870 183360 159660 77898 179690 TRUE FALSE FALSE 90142.21688 87090.66088 57822.38668 146124.7481 76884.38264 105081.6581 137481.3886 123308.9034 84650.26136 134694.4544 0.669234805 0.64657941 0.429285578 1.084860908 0.570805851 0.780148363 1.020690787 0.915471271 0.62846137 1 17.03933093 -5.250167732 24.99516437 0.845351335 0.588187892 0.362109325 0.166984389 870.095823 1929456.271 0.045069517 0.077185552 5.62E-06 5.250167732 -0.257163444 SGTSS(ph)PQS(ph)PVFR ddPTM_HeLa_A485_30min_R1 1 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 2 0 SGTS(0.037)S(0.963)PQS(1)PVFR 191.06 6.11E-13 331510000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SGTSS(ph)PQS(ph)PVFR ddPTM_HeLa_A486_30min_R1 1 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 2 0 SGTS(0.006)S(0.994)PQS(1)PVFR 149.3 2.93E-07 338010000 668510 743070 646340 241570 931000 676820 727270 714760 611440 557710 TRUE FALSE FALSE 621650.9012 684186.427 896620.1576 562387.1683 814225.2988 593320.8298 545299.3537 552024.7511 664440.1115 418055.7859 1.487004659 1.636591216 2.144738066 1.345244312 1.947647482 1.419238412 1.304369828 1.320457149 1.58935753 1 18.67333594 -6.443578751 6.717662939 1.334264361 1.711040121 0.382170188 0.247325386 0.27929509 19.90458695 0.084621358 0.074126223 3.60E-07 6.443578751 0.37677576 SGTSSPQS(ph)PVFR ddPTM_HeLa_A485_30min_R1 8 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SGTSSPQS(1)PVFR;SGTSS(0.003)PQS(0.997)PVFR;SGTSS(0.08)PQS(0.92)PVFR;SGTSSPQS(1)PVFR;SGTSSPQS(1)PVFR;SGTSS(0.001)PQS(0.999)PVFR;SGTSSPQS(1)PVFR;SGTSS(0.001)PQS(0.999)PVFR ;;;;;;; 276.31 1.05E-40 22277530000 8325280 9995470 9055680 9084850 14195050 9257090 12459340 14329940 9555920 12877710 TRUE FALSE FALSE 10177209.81 11164353.27 12405752.87 9581132.351 12781740.98 9741776.918 9797300.226 10815499.75 11473705.49 9667533.894 1.052720366 1.154829493 1.283238622 0.991062711 1.322130454 1.007679624 1.013422899 1.118744435 1.186828577 1 23.20471649 SGTSSPQS(ph)PVFR ddPTM_HeLa_A486_30min_R1 7 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SGTSS(0.016)PQS(0.984)PVFR;SGTSS(0.001)PQS(0.999)PVFR;SGTSS(0.007)PQS(0.993)PVFR;SGTSSPQS(1)PVFR;SGTSSPQS(1)PVFR;SGTSS(0.01)PQS(0.99)PVFR;SGTSSPQS(1)PVFR ;;;;;; 261.41 1.86E-33 21309310000 9829980 10979240 8775980 3735322 12200650 10408960 12889220 12874310 9160570 10602000 TRUE FALSE FALSE 9140949.164 10109205.04 12174274.48 8696018.389 10670330.71 9124808.346 9664200.828 9943110.657 9954615.583 7947190.193 1.150211451 1.272047704 1.531896707 1.094225529 1.342654505 1.148180442 1.216052541 1.251147942 1.252595615 1 22.92201344 -13.4070186 0.229677153 1.63E-11 1.284137341 0.298927367 0.115711323 149.1155689 1.915740035 69.22382229 0.201359968 3.92E-14 13.4070186 1.284137341 SGTSTPTTPGSTAITPGT(ph)PPSYSSR ddPTM_HeLa_A485_30min_R1 2 SGTSTPTTPGSTAITPGTPPSYSSR 25 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 SGTSTPTTPGSTAIT(0.002)PGT(0.986)PPS(0.01)Y(0.002)SSR;SGTSTPTTPGSTAIT(0.035)PGT(0.943)PPS(0.008)Y(0.009)S(0.002)S(0.002)R ; 133.68 4.62E-06 681030000 243970 288200 279980 260980 335950 275140 369850 402800 289240 382320 TRUE FALSE FALSE 298240.2848 321902.483 383556.2529 275236.6766 302501.6384 289545.905 290828.5261 304012.6684 347287.8149 287014.6601 1.039111677 1.12155415 1.336364675 0.958963826 1.053958841 1.008819218 1.013288053 1.059223485 1.210000266 1 18.1307649 -5.296780611 24.99602495 1.04366879 1.161264846 0.265988997 0.092947136 823.1759933 582211.5383 0.026536609 0.039362524 5.05E-06 5.296780611 0.117596057 SGTSTPTTPGSTAITPGT(ph)PPSYSSR ddPTM_HeLa_A486_30min_R1 3 SGTSTPTTPGSTAITPGTPPSYSSR 25 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 SGTSTPTTPGST(0.001)AIT(0.026)PGT(0.953)PPS(0.011)Y(0.006)S(0.001)S(0.001)R;SGTSTPTTPGSTAIT(0.006)PGT(0.99)PPS(0.003)Y(0.001)SSR;SGTSTPTTPGSTAIT(0.038)PGT(0.944)PPS(0.008)Y(0.009)SSR ;; 113.21 0.00033985 1172620000 435204 402147 284441 122589 463035 402982 428746 489656 370542 425954 TRUE FALSE FALSE 404698.447 370279.4071 394584.1728 285393.3873 404956.8327 353266.1781 321469.216 378172.0179 402660.8789 319292.3459 1.267485589 1.159687703 1.23580843 0.89383097 1.268294833 1.106403528 1.006817796 1.184406776 1.261104076 1 18.28451844 SGTT(ph)PKPVINS(ph)T(ph)PGRTPLR ddPTM_HeLa_A486_30min_R1 1 SGTTPKPVINSTPGRTPLR 19 2 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 3 0 S(0.298)GT(0.332)T(0.37)PKPVINS(0.909)T(0.909)PGRT(0.183)PLR 57.922 0.0014694 0 154370 150970 76190 62279 124130 148860 187180 161250 115130 177010 TRUE FALSE FALSE 143549.4602 139006.5874 105692.8084 144988.6594 108560.4579 130495.1667 140345.5842 124536.8951 125109.5611 132685.5439 1.081877166 1.047639278 0.796566117 1.092723858 0.81817849 0.983491968 1.057730783 0.938586763 0.942902727 1 17.01765167 -4.545320357 24.99926642 0.954181967 1.073317935 0.208716275 0.08755454 283.2506517 315531.7861 0.021095564 0.055822377 2.85E-05 4.545320357 0.119135968 SGTT(ph)PKPVINSTPGR ddPTM_HeLa_A485_30min_R1 2 SGTTPKPVINSTPGR 15 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 S(0.165)GT(0.11)T(0.725)PKPVINSTPGR;S(0.089)GT(0.196)T(0.715)PKPVINSTPGR ; 91.065 0.00046303 465630000 957950 855590 580140 1244710 1091650 889750 1368140 1227090 681060 1568370 TRUE FALSE FALSE 1171042.673 955643.8079 794757.9276 1312705.356 982961.493 936335.9342 1075825.712 926144.2535 817742.4949 1177404.223 0.99459697 0.811653117 0.675008559 1.114914768 0.834854737 0.795254439 0.913726732 0.786598379 0.694529949 1 20.16717828 -5.964549213 24.99993897 0.82781954 0.889059337 0.045528935 0.130961929 658.7169311 464525.266 0.040759986 0.046217351 1.09E-06 5.964549213 0.061239797 SGTT(ph)PKPVINSTPGR ddPTM_HeLa_A486_30min_R1 2 SGTTPKPVINSTPGR 15 1 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 S(0.133)GT(0.109)T(0.758)PKPVINSTPGR;S(0.028)GT(0.177)T(0.796)PKPVINSTPGR ; 100.02 0.00070593 1022820000 1628010 1451780 723510 677630 1319260 1554850 1963460 1789010 1124860 1991080 TRUE FALSE FALSE 1513894.906 1336735.666 1003672.448 1577556.886 1153786.109 1363028.416 1472181.541 1381691.477 1222363.77 1492500.608 1.014334532 0.895634922 0.672477078 1.056989107 0.773055705 0.913251498 0.98638589 0.925756056 0.819003868 1 20.50930009 -6.509386404 24.61453717 0.929916498 0.87744412 0.042430829 0.111639658 1938.084268 3535724.585 0.039725502 0.033525631 3.09E-07 6.509386404 -0.052472377 SGVDS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SGVDSPR 7 0 O43516-2;O43516;O43516-3;O43516-4 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 S(0.001)GVDS(0.999)PR 68.224 0.022641 43841000 107160 114850 74178 167280 60143 135810 109500 155750 112040 186310 TRUE FALSE FALSE 130997.3723 128280.7084 101619.529 176418.0828 54154.95175 142920.8016 86104.43047 117552.0683 134525.4003 139866.3458 0.936589653 0.917166369 0.726547394 1.261333324 0.387190724 1.02183839 0.615619361 0.840459995 0.961813934 1 17.09368934 -4.552060676 24.71268751 0.840485479 0.931734218 0.01543257 0.227862597 740.4620958 627057.0535 0.054336334 0.143765 2.81E-05 4.552060676 0.091248739 SGVGTGPPS(ph)PIALPPLR ddPTM_HeLa_A486_30min_R1 1 SGVGTGPPSPIALPPLR 17 0 Q92630 Q92630 DYRK2 Dual specificity tyrosine-phosphorylation-regulated kinase 2 1 0 SGVGT(0.001)GPPS(0.999)PIALPPLR 119.96 4.90E-06 0 24148 27833 26783 11520 31425 26927 30172 29699 22109 31378 TRUE FALSE FALSE 22455.3499 25627.41171 37154.09487 26819.14219 27483.38347 23605.02051 22622.64647 22937.18602 24025.42592 23520.74456 0.954704042 1.089566346 1.579630899 1.140233555 1.168474212 1.003583048 0.961816766 0.975189623 1.021456861 1 14.52164611 -6.200898411 2.62653671 0.985144793 1.20849081 0.29543279 0.149354117 0.375386325 5.097539765 0.058253395 0.056176534 6.30E-07 6.200898411 0.223346017 SGVRGT(ph)PVR ddPTM_HeLa_A485_30min_R1 6 SGVRGTPVR 9 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 SGVRGT(1)PVR;SGVRGT(1)PVR;SGVRGT(1)PVR;SGVRGT(1)PVR;SGVRGT(1)PVR;SGVRGT(1)PVR ;;;;; 121.21 0.00047941 11268080000 2178095 3154760 2763865 2332792 3972790 2959361 4042200 4505250 2336105 2941182 TRUE FALSE FALSE 2662604.718 3523681.739 3786333.678 2460226.52 3577245.078 3114308.566 3178550.948 3400330.374 2804939.845 2207999.456 1.205890115 1.595870746 1.714825458 1.1142333 1.620129511 1.410466184 1.439561473 1.540005078 1.270353504 1 21.07430839 -8.035075085 4.065043774 1.000417968 1.459612742 0.397035176 0.174079333 0.204330071 9.956493295 0.16059218 0.042171455 9.22E-09 8.035075085 0.459194774 SGVRGT(ph)PVR ddPTM_HeLa_A486_30min_R1 3 SGVRGTPVR 9 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 0 SGVRGT(1)PVR;SGVRGT(1)PVR;SGVRGT(1)PVR ;; 98.407 0.0025964 1081700000 797620 744150 653400 301643 963910 714660 867950 918910 590100 850310 TRUE FALSE FALSE 741710.9569 685180.8439 906413.9787 702240.1482 843007.4197 626492.5153 650779.7298 709694.2527 641250.3431 637386.8414 1.163674724 1.074984294 1.422078273 1.101748738 1.322599346 0.982907827 1.021012182 1.113443527 1.006061471 1 19.28180971 -6.273277192 24.97354883 1.031545666 1.214114859 0.478781859 0.100186713 694.5787461 1465308.406 0.034244634 0.030423758 5.33E-07 6.273277192 0.182569194 SGVRGTPVR ddPTM_HeLa_A486_30min_R1 1 SGVRGTPVR 9 1 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 78.098 0.012184 39336000 13433 16769 13071 4990.4 18153 12996 15068 16625 14185 16797 FALSE FALSE TRUE 12491.41607 15440.16337 18132.44125 11617.9034 15876.08147 11392.68565 11297.82703 12839.85042 15414.56722 12590.92187 0.99209702 1.226293319 1.440120226 0.922720633 1.260914938 0.904833321 0.897299431 1.019770479 1.224260414 1 13.6200963 -5.793438541 1.595714972 1.015965976 1.19698745 0.144024907 0.163002463 0.675559041 3.56932691 0.060808234 0.080019229 1.61E-06 5.793438541 0.181021474 SGVS(ph)SDNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A485_30min_R1 1 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 S(0.028)GVS(0.486)S(0.486)DNEDDDDEEDGNYLHPSLFASK 135.88 2.26E-06 717320000 165880 303770 285860 82291 442520 227160 321220 313690 278630 207910 TRUE FALSE FALSE 202779.4337 339293.2591 391611.5096 86786.34896 398461.155 239053.7463 252588.7229 236757.0357 334548.4853 156081.8633 1.299186398 2.173816047 2.509013548 0.556030964 2.552898502 1.531592084 1.618309248 1.516877302 2.143416783 1 17.25194338 -10.87686129 2.763325945 0.648677935 1.769469422 0.138150148 0.574530791 88314525.56 49140477.8 202343579.3 0.139791055 1.33E-11 10.87686129 1.120791487 SGVS(ph)SDNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A486_30min_R1 2 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 S(0.088)GVS(0.456)S(0.456)DNEDDDDEEDGNYLHPSLFASK;S(0.014)GVS(0.493)S(0.493)DNEDDDDEEDGNYLHPSLFASK ; 109.71 0.00029487 89338000 140613 129371 129218 20261.2 168842 121331 126167 122553 149576 63511 TRUE FALSE FALSE 130756.7548 119119.1708 179254.6702 47169.09754 147664.262 106362.4148 94598.68214 94650.35721 162541.3681 47607.43221 2.746561802 2.502112911 3.765266511 0.990792726 3.10170608 2.234155674 1.987057015 1.988142456 3.414201534 1 15.5388992 -10.93489949 2.671246375 1.63E-05 2.492918338 0.266565817 0.757410629 17925035.75 4389281.092 110772566.4 0.18384585 1.16E-11 10.93489949 2.492902061 SGVSLAALKK ddPTM_HeLa_A485_30min_R1 2 SGVSLAALKK 10 1 P16402;P10412;P16403 P16402;P10412;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 0 0 ; ; 60.547 0.020713 0 118749 119576 157632 159036 195551 137559 159316 143216 162321 234380 FALSE FALSE TRUE 145164.3054 133559.373 215946.6364 167723.734 176081.2558 144761.3765 125276.8351 108092.0514 194897.3358 175953.3794 0.825015728 0.759061141 1.227294623 0.953228261 1.000726763 0.822725753 0.711988798 0.614322111 1.107664635 1 17.4248337 -6.275503419 21.90774473 0.818525856 0.957531288 0.063391284 0.17355358 343.2945778 534750.0652 0.061758056 0.054849805 5.30E-07 6.275503419 0.139005431 SGVSLAALKK ddPTM_HeLa_A486_30min_R1 1 SGVSLAALKK 10 1 P16402;P10412;P16403 P16402;P10412;P16403 HIST1H1D;HIST1H1E;HIST1H1C Histone H1.3;Histone H1.4;Histone H1.2 0 0 108.67 0.00060721 0 41387 38114 22507 13883 42922 34161 51352 51148 29190 44264 FALSE FALSE TRUE 38485.98502 35093.70783 31222.31316 32320.32561 37538.32253 29946.56314 38503.18645 39502.71695 31720.2127 33180.00629 1.159914941 1.057676347 0.940997807 0.9740904 1.131353689 0.902548447 1.160433368 1.19055785 0.956003818 1 15.01802654 SGVSS(ph)DNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A485_30min_R1 4 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 S(0.007)GVS(0.03)S(0.963)DNEDDDDEEDGNYLHPSLFASK;S(0.001)GVS(0.123)S(0.876)DNEDDDDEEDGNYLHPSLFASK;SGVS(0.051)S(0.949)DNEDDDDEEDGNYLHPSLFASK;S(0.006)GVS(0.144)S(0.85)DNEDDDDEEDGNYLHPSLFASK ;;; 315.87 9.23E-109 2449879000 1037031 1511060 1468810 487752 2262190 1234238 1645110 1621760 1478180 1179520 TRUE FALSE FALSE 1267714.968 1687765.323 2012183.941 514396.6567 2036958.421 1298860.793 1293618.809 1224020.817 1774837.167 885487.3715 1.431657875 1.906029806 2.272402754 0.580919247 2.300381108 1.466831527 1.460911641 1.382313127 2.004361919 1 19.75611221 -11.03355126 2.732472831 0.208574215 1.640800477 0.138274241 0.483013594 26678500.32 15476575.56 133634126.9 0.119785877 9.26E-12 11.03355126 1.432226262 SGVSS(ph)DNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_A486_30min_R1 3 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 S(0.019)GVS(0.094)S(0.887)DNEDDDDEEDGNYLHPSLFASK;S(0.008)GVS(0.144)S(0.848)DNEDDDDEEDGNYLHPSLFASK;S(0.001)GVS(0.124)S(0.875)DNEDDDDEEDGNYLHPSLFASK ;; 241.7 5.74E-50 2342850000 1462920 1626860 1198200 77902 1847210 1120140 1226980 1245510 1429300 423310 TRUE FALSE FALSE 1360376.863 1497941.689 1662175.129 181359.7929 1615515.697 981948.5155 919976.6263 961934.5623 1553192.875 317310.4207 4.28721143 4.720745336 5.238325061 0.571553221 5.091278419 3.094599015 2.899295347 3.031525281 4.894868789 1 18.27553538 -9.849474878 0.224629115 1.03E-39 4.269081392 0.244987863 1.37873122 24.97724141 1.385347637 27.05439538 3.148618068 1.41E-10 9.849474878 4.269081392 SGVTNMS(ph)SPHK ddPTM_HeLa_A486_30min_R1 1 SGVTNMSSPHK 11 0 Q9NVG8 Q9NVG8 TBC1D13 TBC1 domain family member 13 1 0 S(0.001)GVT(0.008)NMS(0.583)S(0.407)PHK 57.019 0.0096938 0 55196 54307 29120 13135 51265 64130 69657 68943 50837 68569 TRUE FALSE FALSE 51327.04543 50003.51554 40396.04386 30578.94381 44834.86567 56218.29263 52228.08184 53246.18392 55243.59209 51398.87609 0.998602486 0.972852314 0.785932435 0.594934095 0.872292725 1.093765018 1.01613276 1.035940627 1.074801558 1 15.64944919 -6.173115161 5.56444497 1.044141185 0.832088085 0.468414488 0.106187533 0.226168631 11.13796617 0.039401871 0.039371395 6.71E-07 6.173115161 -0.212053101 SGVTNMSS(ph)PHK ddPTM_HeLa_A485_30min_R1 4 SGVTNMSSPHK 11 0 Q9NVG8 Q9NVG8 TBC1D13 TBC1 domain family member 13 1 0 SGVTNMS(0.006)S(0.994)PHK;SGVTNMS(0.006)S(0.994)PHK;SGVTNMS(0.002)S(0.998)PHK;SGVTNMS(0.004)S(0.996)PHK ;;; 118.52 0.00017418 1880350000 2923280 2215760 2188180 4409500 3895210 2305420 3751430 2602180 2605590 6367400 TRUE FALSE FALSE 3573553.551 2474873.857 2997678.84 4650379.82 3507389.215 2426128.226 2949906.334 1963991.275 3128508.013 4780124.363 0.747585895 0.517742567 0.627113149 0.972857496 0.733744344 0.507545001 0.61711916 0.410866146 0.654482556 1 22.18861672 -10.03055528 6.071143086 1.000000469 0.639828141 0.345244934 0.147329553 1.00E-06 1.60E-07 0.152728996 0.037042174 9.32E-11 10.03055528 -0.360172327 SGVTNMSS(ph)PHK ddPTM_HeLa_A486_30min_R1 5 SGVTNMSSPHK 11 0 Q9NVG8 Q9NVG8 TBC1D13 TBC1 domain family member 13 1 0 SGVTNMS(0.005)S(0.995)PHK;SGVTNMS(0.001)S(0.999)PHK;SGVTNMS(0.005)S(0.995)PHK;SGVTNMS(0.006)S(0.994)PHK;S(0.001)GVT(0.001)NMS(0.074)S(0.924)PHK ;;;; 133.48 2.27E-05 2609660000 4154370 3981670 2157530 948300 3437340 4556210 4860050 4475980 3691040 4751940 TRUE FALSE FALSE 3863170.116 3666147.968 2992983.397 2207690.324 3006196.765 3994111.134 3644014.086 3456897.064 4010982.319 3562023.294 1.084543754 1.02923189 0.840248126 0.619785482 0.843957638 1.121304047 1.023018039 0.970486934 1.126040452 1 21.76426552 -6.251716382 24.71967964 1.044753338 0.874587003 0.302026072 0.1246982 839.7886172 2135073.497 0.046289635 0.045720069 5.60E-07 6.251716382 -0.170166335 SGYHDDS(ph)DEDLLE ddPTM_HeLa_A485_30min_R1 4 SGYHDDSDEDLLE 13 0 Q99523-2;Q99523 Q99523-2 SORT1 Sortilin 1 0 SGYHDDS(1)DEDLLE;S(0.01)GYHDDS(0.99)DEDLLE;S(0.036)GYHDDS(0.964)DEDLLE;S(0.005)GYHDDS(0.995)DEDLLE ;;; 136.24 9.90E-06 3036750000 2241910 2723450 2069820 1969050 2477110 2400540 3336420 3288560 2078010 3951860 TRUE FALSE FALSE 2740615.145 3041933.787 2835532.55 2076614.216 2230480.231 2526228.562 2623566.611 2482035.504 2495047.546 2966734.031 0.923781882 1.025347657 0.955775786 0.699966426 0.751830197 0.851518382 0.884328215 0.836622184 0.841008166 1 21.50044416 -5.031680762 23.43479266 0.829840797 0.978564025 0.368741649 0.077914341 277.5096036 205278.7474 0.021113089 0.036632535 9.30E-06 5.031680762 0.148723229 SGYHDDS(ph)DEDLLE ddPTM_HeLa_A486_30min_R1 4 SGYHDDSDEDLLE 13 0 Q99523-2;Q99523 Q99523-2 SORT1 Sortilin 1 0 SGYHDDS(1)DEDLLE;SGYHDDS(1)DEDLLE;S(0.013)GYHDDS(0.987)DEDLLE;S(0.018)GYHDDS(0.982)DEDLLE ;;; 180.09 4.70E-17 2363580000 3118400 3191430 2543180 396879 3542690 3136060 3195170 3021110 3277480 2927990 TRUE FALSE FALSE 2899816.263 2938529.464 3527967.405 923954.3692 3098332.786 2749164.802 2395704.671 2333269.203 3561574.605 2194802.246 1.321219836 1.338858418 1.607419261 0.420973858 1.411668314 1.252579729 1.091535547 1.06308858 1.622731438 1 21.06565953 SGYMS(ph)DSDLMGK ddPTM_HeLa_A485_30min_R1 2 SGYMSDSDLMGK 12 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 SGYMS(0.984)DS(0.016)DLMGK;SGYMS(0.953)DS(0.047)DLMGK ; 175.28 5.69E-11 416750000 1115380 1080330 894510 1369860 1519990 1185580 1723530 1527230 962840 1801010 TRUE FALSE FALSE 1363492.433 1206665.196 1225426.473 1444691.983 1368654.459 1247655.136 1355283.736 1152674.448 1156073.156 1352051.352 1.008462017 0.892469945 0.906346102 1.068518574 1.012279938 0.922786796 1.002390725 0.852537477 0.855051219 1 20.36671852 -7.258709837 24.83277472 0.89034576 0.970852448 0.196732721 0.064014429 322.7037134 2935918.731 0.032296559 0.017556428 5.51E-08 7.258709837 0.080506688 SGYMS(ph)DSDLMGK ddPTM_HeLa_A486_30min_R1 1 SGYMSDSDLMGK 12 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 SGYMS(0.997)DS(0.003)DLMGK 185.95 5.48E-13 369480000 819030 834080 433230 316920 812640 790610 974110 942850 638190 1033500 TRUE FALSE FALSE 761620.2265 767984.4631 600988.2583 737805.7763 710711.1136 693072.5765 730377.3749 728183.6373 693508.823 774704.873 0.983110153 0.9913252 0.775764138 0.952370124 0.917395951 0.894627878 0.942781439 0.939949731 0.895190991 1 19.56328729 -10.35783282 4.180245763 1.000164736 0.92034592 0.143642997 0.057530341 8.80E-05 1.35E-05 0.05550904 0.013435167 4.39E-11 10.35783282 -0.079818816 SGYSSPGS(ph)PGTPGSR ddPTM_HeLa_A486_30min_R1 1 SGYSSPGSPGTPGSR 15 0 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 1 0 SGYSSPGS(1)PGTPGSR 184.51 7.55E-18 126330000 186390 194850 157170 68068 203010 200640 221330 205560 150830 195110 TRUE FALSE FALSE 173325.0235 179409.3764 218030.4332 158465.744 177546.5928 175887.0768 165950.893 158758.4753 163904.0658 146253.186 1.185102549 1.226704055 1.490773904 1.08350285 1.213967351 1.20262048 1.134682242 1.085504389 1.120687147 1 17.15810853 -7.010907003 0.46298693 1.00839718 1.281419772 0.415532178 0.095592871 0.994265054 0.49496004 0.10106821 0.085444596 9.75E-08 7.010907003 0.273022592 SHAAEK(ac)LR ddPTM_HeLa_A485_30min_R1 2 SHAAEKLR 8 1 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 0 1 ; SHAAEK(1)LR;SHAAEK(1)LR 84.213 0.020671 13139600 7362.3 12967.3 11985.6 6665.6 13446.5 14145.2 16696.7 23720 19935.2 25450 FALSE TRUE FALSE 9000.018235 14483.71293 16419.5722 7029.72485 12107.71925 14885.8208 13129.31365 17902.63281 23936.01178 19105.78337 0.471062508 0.758080035 0.859403244 0.367937012 0.633720116 0.77912643 0.687190543 0.937026892 1.252814989 1 14.22172179 -7.38895963 2.524368069 1.126926759 0.651465496 0.63138661 0.148513752 0.195587714 2.34414887 0.108805267 0.041783732 4.08E-08 7.38895963 -0.475461263 SHAAEK(ac)LR ddPTM_HeLa_A486_30min_R1 2 SHAAEKLR 8 1 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 0 1 ; SHAAEK(1)LR;SHAAEK(1)LR 105.1 0.0042671 35418000 18604.1 22051 18980.8 9078.6 31005 24736.8 25978 27010 23600.4 28494 FALSE TRUE FALSE 17300.04866 20303.59845 26330.67408 21135.43961 27116.06379 21685.02512 19478.02963 20860.41262 25646.10167 21358.91694 0.809968441 0.950591199 1.232771969 0.989537048 1.269543014 1.015268011 0.911939013 0.9766606 1.200721074 1 14.38255087 -4.525208903 24.98404968 1.071187781 0.845124072 0.342052249 0.115163432 68.01351004 729254.3097 0.029626569 0.079477373 2.98E-05 4.525208903 -0.226063709 SHAHK(ac)MVK ddPTM_HeLa_A485_30min_R1 2 SHAHKMVK 8 1 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 1 ; SHAHK(1)MVK;SHAHK(1)MVK 87.308 0.010772 35181000 24224.9 26575 17166.9 18152.8 18655.7 33749 29022 39900 31435 36757 FALSE TRUE FALSE 29613.64543 29682.71508 23517.65068 19144.4415 16798.273 35516.04545 22821.21261 30114.46244 37743.71616 27594.15636 1.073185389 1.075688442 0.85226924 0.693786077 0.608761971 1.287085751 0.827030633 1.091334776 1.36781555 1 14.75207516 -7.47263596 5.579992442 1.199312066 0.915889053 0.228527543 0.203006848 0.281057294 20.44084217 0.123282067 0.055318484 3.37E-08 7.47263596 -0.283423014 SHAHK(ac)MVK ddPTM_HeLa_A486_30min_R1 2 SHAHKMVK 8 1 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 1 ; SHAHK(1)MVK;SHAHK(1)MVK 73.233 0.021355 23946000 10790.5 7572.6 11266.5 856.59 6875.5 18594.8 9531.2 9230.1 14268.9 8503.7 FALSE TRUE FALSE 10034.14167 6972.519597 15629.19053 1994.18481 6013.110679 16300.76263 7146.392949 7128.607722 15505.73974 6374.31817 1.574151369 1.093845555 2.45189997 0.312846764 0.943333941 2.557255882 1.121122724 1.118332586 2.432533069 1 12.63805532 SHAHK(ac)MVK(ac)WGLGLDDEGSSQGEPQSK ddPTM_HeLa_A485_30min_R1 2 SHAHKMVKWGLGLDDEGSSQGEPQSK 26 2 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 2 ; SHAHK(1)MVK(1)WGLGLDDEGSSQGEPQSK;SHAHK(1)MVK(1)WGLGLDDEGSSQGEPQSK 188.29 6.43E-28 51399000 18216.5 22137.4 16317.4 15890.7 25684.9 22002.9 31914.2 32863.7 23900.3 38201 FALSE TRUE FALSE 22268.69758 24726.17636 22353.88528 16758.7687 23127.62117 23154.93782 25095.47045 24803.82605 28696.87098 28678.19374 0.776502795 0.862194341 0.779473264 0.58437323 0.806453202 0.807405726 0.875071515 0.864901963 1.00065127 1 14.80766654 -7.289169554 0.985914567 1.00411459 0.761234496 0.616607149 0.070270271 0.402002437 0.697033281 0.067365246 0.027028995 5.14E-08 7.289169554 -0.242880094 SHALVT(ph)LT(ph)LR ddPTM_HeLa_A486_30min_R1 1 SHALVTLTLR 10 0 A0A2R8Y870;A0A2R8YEU8;Q96AC6 A0A2R8Y870 KIFC2 Kinesin-like protein KIFC2 2 0 SHALVT(1)LT(1)LR 64.103 0.031954 144750000 33654 42343 39308 9614.5 53215 30296 32085 30700 37384 22254 TRUE FALSE FALSE 31295.02839 38987.58647 54529.1103 22383.04189 46540.27849 26558.38755 24056.99364 23710.28018 40624.47522 16681.45355 1.876037259 2.33718161 3.268846455 1.341792058 2.789941437 1.592090729 1.442140133 1.421355765 2.435307876 1 14.02595738 -6.290222608 22.87659617 1.59601079 2.32162308 0.290009068 0.582173204 340.0714385 270283.1359 0.198858682 0.17542934 5.13E-07 6.290222608 0.72561229 SHAQERHS(ph)GNFPGR ddPTM_HeLa_A486_30min_R1 2 SHAQERHSGNFPGR 14 1 P78332;P78332-3;C9JMC8 P78332 RBM6 RNA-binding protein 6 1 0 SHAQERHS(1)GNFPGR;SHAQERHS(1)GNFPGR ; 127.91 1.45E-05 65438000 19592.9 13805.7 19544.8 6728.4 25799 16258 20418.8 24805 14061.2 19624.4 TRUE FALSE FALSE 18219.53889 12711.68605 27113.06999 15664.05523 22563.04885 14252.25326 15309.80027 19157.44299 15280.03614 14710.32251 1.238554687 0.864133743 1.843132261 1.06483425 1.533824214 0.968860693 1.040752184 1.302312915 1.038728833 1 13.84454126 -6.282460555 24.99170263 1.087189318 1.300307685 0.173319835 0.259052901 1681.191394 1998732.236 0.089192356 0.078736448 5.22E-07 6.282460555 0.213118367 SHDDGNIDLES(ph)DSFLKFDSEPSAVALELPTR ddPTM_HeLa_A485_30min_R1 2 SHDDGNIDLESDSFLKFDSEPSAVALELPTR 31 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SHDDGNIDLES(0.568)DS(0.427)FLKFDS(0.005)EPSAVALELPTR;SHDDGNIDLES(0.817)DS(0.183)FLKFDSEPSAVALELPTR ; 104.91 7.71E-05 124333000 106783 79599 57359 131958 132945 91973 155436 161493 79301 179569 TRUE FALSE FALSE 130536.51 88907.41063 78578.48101 139166.5314 119708.529 96788.56406 122225.8288 121886.5885 95215.98331 134805.753 0.968330409 0.659522377 0.58290154 1.032348607 0.888007569 0.717985412 0.906681103 0.904164591 0.70631988 1 17.04052254 -14 0.196243009 1.781524018 0.787882176 0.117921579 0.139699867 310.3873268 3.058901964 95.57397871 0.36109963 1.00E-14 14 -0.993641842 SHDDGNIDLES(ph)DSFLKFDSEPSAVALELPTR ddPTM_HeLa_A486_30min_R1 1 SHDDGNIDLESDSFLKFDSEPSAVALELPTR 31 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SHDDGNIDLES(0.976)DS(0.023)FLKFDSEPSAVALELPTR 167.97 1.12E-14 24779000 16550 20709 10719 9998.1 17683 20052 24195 25935 14871 25370 TRUE FALSE FALSE 15389.93046 19067.94342 14869.68386 23276.08208 15465.03325 17578.18811 18141.15509 20030.16666 16160.03025 19017.18687 0.809264302 1.002668983 0.781907648 1.223949801 0.813213508 0.924331671 0.953934734 1.053266542 0.84975924 1 14.21501623 -3.659773437 2.190122472 0.955665533 2.89E-12 0.109728223 0.12219216 24.941267 18.97676736 0.030264673 90.1993142 0.00021889 3.659773437 -0.955665533 SHDDGNIDLESDS(ph)FLKFDSEPSAVALELPTR ddPTM_HeLa_A486_30min_R1 1 SHDDGNIDLESDSFLKFDSEPSAVALELPTR 31 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 S(0.001)HDDGNIDLES(0.166)DS(0.833)FLKFDSEPSAVALELPTR 172.51 6.35E-15 127000000 89198 84815 51942 57465 89865 104570 143740 135210 69598 155790 TRUE FALSE FALSE 82945.68082 78093.95051 72055.33346 133781.4241 78593.29374 91669.21659 107774.7317 104425.6346 75630.81068 116779.17 0.710278047 0.668731851 0.617022141 1.145593209 0.673007813 0.784979176 0.922893455 0.894214564 0.647639564 1 16.83342344 SHEGETAYIR ddPTM_HeLa_A485_30min_R1 1 SHEGETAYIR 10 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 0 82.417 0.017951 13344000 5574 5863.9 6581.8 3511 5818.6 4760 6120.8 6898.6 4467.3 5662.6 FALSE FALSE TRUE 6813.91707 6549.632096 9016.681712 3702.79704 5239.279754 5009.22624 4813.041078 5206.707533 5363.846133 4251.018032 1.602890653 1.540720845 2.121064094 0.871037716 1.232476483 1.178359207 1.132209048 1.224814267 1.2617792 1 12.05359266 -5.268254024 24.99998604 1.144578616 1.733474767 0.713539258 0.181480992 285.1627681 1046139.135 0.049892462 0.075894635 5.39E-06 5.268254024 0.588896151 SHELDIDENPAS(ph)DFDDSGSLLGFK ddPTM_HeLa_A485_30min_R1 1 SHELDIDENPASDFDDSGSLLGFK 24 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 0 SHELDIDENPAS(0.999)DFDDS(0.001)GSLLGFK 124.5 4.37E-06 42485000 13500 15050 12808 17211 23871 15149 22514 22444 14245 23288 TRUE FALSE FALSE 16503.02843 16809.96658 17546.21219 18151.19335 21494.31942 15942.17822 17703.69998 16939.57381 17103.84084 17482.73018 0.943961741 0.96151839 1.003631126 1.038235628 1.229460113 0.911881499 1.012639318 0.968931833 0.978327793 1 14.09364288 -9.924141552 13.6595954 1 1.008001772 0 0.08240536 0 0 0.082422604 0.019990418 1.19E-10 9.924141552 0.008001772 SHELDIDENPAS(ph)DFDDSGSLLGFK ddPTM_HeLa_A486_30min_R1 1 SHELDIDENPASDFDDSGSLLGFK 24 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 0 SHELDIDENPAS(0.995)DFDDS(0.005)GSLLGFK 154.88 8.64E-10 47676000 27292 25091 19038 11918 28730 24114 30772 32248 18414 37956 TRUE FALSE FALSE 25378.97174 23102.69778 26410.02346 27745.7063 25126.4155 21139.05985 23072.52013 24905.83437 20010.14035 28451.57055 0.892006003 0.812000791 0.928244837 0.975190676 0.883129297 0.742983935 0.810940123 0.875376434 0.7033053 1 14.79622067 -6.02356057 23.73864347 0.817235935 0.90130578 0.153995959 0.083404295 676.7224061 681835.9976 0.026539513 0.026725711 9.47E-07 6.02356057 0.084069846 SHESNAPGS(ph)AGGQASEKPR ddPTM_HeLa_A485_30min_R1 4 SHESNAPGSAGGQASEKPR 19 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 SHES(0.002)NAPGS(0.998)AGGQASEKPR;SHESNAPGS(1)AGGQASEKPR;SHESNAPGS(0.994)AGGQAS(0.006)EKPR;SHESNAPGS(0.995)AGGQAS(0.005)EKPR ;;; 151.42 6.36E-09 569921000 511192 684956 587123 267169 1003520 627856 815538 955620 637101 474800 TRUE FALSE FALSE 624904.8968 765055.6459 804324.2299 281763.766 903606.0252 660729.5693 641291.644 721252.6966 764961.3269 356441.098 1.753178576 2.146373272 2.25654178 0.790491802 2.53507811 1.853685147 1.799151802 2.023483545 2.146108659 1 18.44330417 -10.15415456 6.367453212 0.999996212 1.921090692 0.284462939 0.43900325 2.27E-05 3.02E-06 0.409007403 0.099198459 7.01E-11 10.15415456 0.92109448 SHESNAPGS(ph)AGGQASEKPR ddPTM_HeLa_A486_30min_R1 4 SHESNAPGSAGGQASEKPR 19 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 SHESNAPGS(1)AGGQASEKPR;SHESNAPGS(1)AGGQASEKPR;SHESNAPGS(0.999)AGGQAS(0.001)EKPR;SHESNAPGS(0.998)AGGQAS(0.002)EKPR ;;; 193.87 5.49E-19 616298000 829250 821830 704415 56461.8 971750 562854 674600 692060 803160 233441 TRUE FALSE FALSE 771123.8573 756705.1977 977183.3529 131445.9238 849864.0538 493414.7962 505807.9448 534493.0456 872778.5555 174985.8542 4.406778256 4.324379256 5.584356276 0.751180285 4.85675861 2.81974105 2.890564767 3.05449288 4.987709205 1 17.41687877 -5.213173033 24.99936645 3.070948721 4.727091954 0.287107149 1.327736808 544.2408179 281886.5422 0.340083162 0.589039807 6.12E-06 5.213173033 1.656143232 SHFASSHALICISHWILGIGDR ddPTM_HeLa_A485_30min_R1 1 SHFASSHALICISHWILGIGDR 22 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 112.54 1.66E-06 2789500 4002 6315.5 7549.1 2318.5 6287.1 5018.5 5295.9 5873.8 6343.9 5156.9 FALSE FALSE TRUE 4892.231093 7054.042787 10341.82623 2445.153784 5661.134249 5281.2609 4164.387701 4433.24134 7617.06254 3871.379736 1.263691869 1.822100457 2.671354127 0.631597506 1.462304045 1.36418054 1.075685669 1.145132135 1.967531748 1 11.91863211 -5.269153279 24.9998873 1.249441584 1.909353993 0.321991813 0.454344632 703.5066342 2279985.852 0.126593068 0.191779346 5.38E-06 5.269153279 0.659912409 SHFEQWGTLTDCVVMRDPNTK(ac)R ddPTM_HeLa_A485_30min_R1 3 SHFEQWGTLTDCVVMRDPNTKR 22 2 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 1 ;; SHFEQWGTLTDCVVMRDPNTK(1)R;SHFEQWGTLTDCVVMRDPNTK(1)R;SHFEQWGTLTDCVVMRDPNTK(1)R 223.89 4.06E-35 221337000 30276.3 28722.9 37908 35473.9 45830.1 30022.2 40713 52040 36143 61082 FALSE TRUE FALSE 37011.15848 32081.7933 51931.74668 37411.74933 41267.09432 31594.11597 32014.33496 39277.1084 43396.56858 45855.38153 0.807127915 0.699629841 1.132511495 0.815863876 0.899940049 0.688994725 0.69815873 0.856543051 0.946378966 1 15.48480344 -7.810652217 3.116869903 0.993682133 0.822972695 0.197395662 0.123009369 0.417729738 7.640676834 0.120000013 0.033136912 1.55E-08 7.810652217 -0.170709438 SHFEQWGTLTDCVVMRDPNTK(ac)R ddPTM_HeLa_A486_30min_R1 2 SHFEQWGTLTDCVVMRDPNTKR 22 2 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 1 ; SHFEQWGTLTDCVVMRDPNTK(1)R;SHFEQWGTLTDCVVMRDPNTK(1)R 189.82 7.68E-24 238750000 20184.2 16646.3 16494.8 3631.97 20616.8 15254.2 18264.2 19175.9 14804.6 21115.6 FALSE TRUE FALSE 18769.39181 15327.18656 22882.02831 8455.40971 18030.8487 13372.2919 13694.30398 14809.96618 16087.87465 15828.11632 1.185825997 0.968351903 1.445657073 0.534201894 1.139165794 0.844844176 0.865188485 0.935674585 1.016411197 1 13.95020195 -5.247119168 24.99363496 0.907972123 1.176785633 0.350155097 0.18324415 940.6069418 1641676.5 0.046780373 0.080539112 5.66E-06 5.247119168 0.26881351 SHGLEPAAPS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SHGLEPAAPSPR 12 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR ;; 110.97 0.00029385 936670000 675326 882260 748130 648891 893910 721090 876110 938540 587632 779460 TRUE FALSE FALSE 825549.9389 985432.6324 1024894.419 684338.2723 804909.1817 758845.1574 688921.9413 708361.5934 705564.3523 585154.9669 1.410822749 1.684054119 1.751492301 1.169499211 1.375548747 1.296827679 1.177332468 1.210553842 1.2057735 1 19.15845922 -5.268060347 24.99446853 1.223619535 1.622316167 0.701738387 0.122162131 279.8194 1056331.922 0.033987408 0.051768491 5.39E-06 5.268060347 0.398696633 SHGLEPAAPS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SHGLEPAAPSPR 12 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR ;; 114.69 0.00021341 1061150000 951990 865090 664146 271427 904260 774274 839220 836470 759370 832740 TRUE FALSE FALSE 885260.4171 796537.1178 921321.1176 631895.7732 790839.2789 678751.9461 629238.2796 646024.041 825192.803 624216.4838 1.418194553 1.276059089 1.475964095 1.012302285 1.266931104 1.087366264 1.008044959 1.034935888 1.321965735 1 19.25168693 -5.261644571 24.9999996 1.107996536 1.378671234 0.569345979 0.113655056 13.84913658 1687430.435 0.030822658 0.049171207 5.47E-06 5.261644571 0.270674698 SHGS(ph)PTHVR ddPTM_HeLa_A485_30min_R1 2 SHGSPTHVR 9 0 Q5VT52-5 Q5VT52-5 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.002)HGS(0.998)PTHVR;SHGS(0.997)PT(0.003)HVR ; 129.82 0.00018128 63480000 49190 33820 24722 43840 22278.2 64011 29414 48748 36946 45497 TRUE FALSE FALSE 60132.1458 37774.95481 33867.69657 46234.86819 20060.10418 67362.51698 23129.45861 36792.47657 44360.72331 34155.43521 1.760543979 1.105971995 0.991575612 1.353660637 0.587318067 1.972234187 0.677182371 1.077207078 1.298789579 1 15.05982755 -4.26060236 23.26415023 1.120343621 1.760544431 0.218799847 0.364092923 39.69791288 1102827.504 0.084143582 0.491399712 5.49E-05 4.26060236 0.64020081 SHHAPMS(ph)PGSSGGGGQPLAR ddPTM_HeLa_A485_30min_R1 9 SHHAPMSPGSSGGGGQPLAR 20 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 S(0.015)HHAPMS(0.984)PGS(0.001)SGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.999)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.996)PGS(0.003)S(0.001)GGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.998)PGS(0.002)SGGGGQPLAR ;;;;;;;; 253.18 9.09E-59 4487904000 1473349 3065046 3239022 767994 3437894 2415386 2419298 2844950 2683799 1536378 TRUE FALSE FALSE 1801090.402 3423476.467 4437271.025 809947.5676 3095605.202 2541851.876 1902395.218 2147221.552 3222412.842 1153387.24 1.56156609 2.968193465 3.847165005 0.702233855 2.683925308 2.203814806 1.649398531 1.861665777 2.79386899 1 20.13744554 -10.4963332 0.204663638 1.65E-14 2.557688619 0.153470759 0.840526478 48.84454077 1.80462611 30.21051168 2.299464587 3.19E-11 10.4963332 2.557688619 SHHAPMS(ph)PGSSGGGGQPLAR ddPTM_HeLa_A486_30min_R1 9 SHHAPMSPGSSGGGGQPLAR 20 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.999)PGS(0.001)SGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.998)PGS(0.002)SGGGGQPLAR;SHHAPMS(0.997)PGS(0.002)SGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR ;;;;;;;; 213.23 3.28E-27 4432310000 3094578 3461007 3790812 223815.3 4646315 2381267 2525343 2848077 3109754 1192227 TRUE FALSE FALSE 2877664.063 3186744.201 5258715.928 521053.3294 4063530.848 2087490.488 1893475.471 2199632.04 3379309.981 893685.5991 3.219996009 3.565844861 5.884301966 0.583038744 4.54693558 2.335822006 2.118726623 2.461304112 3.781318602 1 19.76940785 -5.256475888 24.9998069 2.539342739 4.15762716 0.295921003 1.272981971 578.3537326 2913007.664 0.335170245 0.558006892 5.54E-06 5.256475888 1.618284421 SHIAQWS(ph)PHTPPR ddPTM_HeLa_A485_30min_R1 1 SHIAQWSPHTPPR 13 0 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 0 SHIAQWS(1)PHTPPR 101.8 0.00048369 884510000 232960 340940 231440 214710 284790 254500 325770 307800 217440 411630 TRUE FALSE FALSE 284781.1483 380809.9672 317059.287 226439.0636 256435.3076 267825.2265 256166.5782 232311.5674 261078.2135 309018.2165 0.92156751 1.232322067 1.026021348 0.732769305 0.829838805 0.866697211 0.828969182 0.751773051 0.844863505 1 18.23733236 -5.114448553 5.407459882 0.827643608 1.088649928 0.524955945 0.097647184 0.147251817 5.976526229 0.024942618 0.044369498 7.68E-06 5.114448553 0.261006319 SHIAQWSPHT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 SHIAQWSPHTPPR 13 0 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 0 SHIAQWSPHT(1)PPR 171.25 7.49E-12 89169000 11683 13180 11605 10011 14036 12507 14370 9132.5 11480 22183 TRUE FALSE FALSE 14281.84304 14721.28635 15898.17242 10557.87558 12638.52656 13161.84718 11299.73211 6892.740056 13783.9307 16653.18635 0.857604229 0.883992171 0.954662495 0.633985314 0.758925427 0.790350081 0.678532737 0.413899173 0.827705306 1 14.02351062 -5.25870183 24.90610095 0.706329229 0.89727689 0.215167621 0.144001975 310.7312195 2827000.737 0.039002412 0.063857343 5.51E-06 5.25870183 0.190947661 SHIAQWSPHT(ph)PPR ddPTM_HeLa_A486_30min_R1 2 SHIAQWSPHTPPR 13 0 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 0 SHIAQWSPHT(1)PPR;SHIAQWS(0.061)PHT(0.939)PPR ; 182.17 7.87E-17 395700000 34102 32192 25760.4 6106.9 30779 32549 30820 31545 33837 31046 TRUE FALSE FALSE 31711.6259 29640.98868 35735.51677 14217.17183 26918.41082 28533.43531 23108.51002 24362.89212 36770.0184 23271.87952 1.362658563 1.273682628 1.535566422 0.610916356 1.156692599 1.226090711 0.992979961 1.046881155 1.580019283 1 14.50630011 SHIAS(ph)PSPCPDR ddPTM_HeLa_A486_30min_R1 3 SHIASPSPCPDR 12 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 SHIAS(0.997)PS(0.003)PCPDR;SHIAS(0.989)PS(0.011)PCPDR;SHIAS(0.991)PS(0.009)PCPDR ;; 119.45 0.0002517 820300000 688350 892430 759300 160265 941250 720500 774940 784080 792830 693830 TRUE FALSE FALSE 640100.2196 821710.5966 1053321.295 373105.0193 823189.6482 631612.0355 581041.8155 605562.1003 861553.1428 520090.4519 1.230747877 1.579937862 2.025265588 0.717384866 1.582781697 1.214427285 1.117193775 1.164339968 1.656544817 1 18.98840303 -5.252846178 24.99975228 1.22653166 1.608779127 0.262992031 0.309118454 917.8509671 2670250.09 0.081969179 0.139135442 5.59E-06 5.252846178 0.382247468 SHIFFWTWSGNSLTR ddPTM_HeLa_A485_30min_R1 2 SHIFFWTWSGNSLTR 15 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 0 0 ; ; 222.45 7.81E-23 41506000 17326.5 19998 19483.5 15430.5 24583.9 15284.6 20076 23366.1 15770.5 27328.8 FALSE FALSE TRUE 21180.72015 22336.59214 26691.25743 16273.42914 22136.2406 16084.87802 15786.59859 17635.52734 18935.49469 20516.23311 1.032388355 1.088727742 1.300982363 0.793197711 1.078962229 0.784007373 0.76946867 0.859588953 0.92295182 1 14.32447825 -5.27251193 24.99963428 0.879856559 1.135502318 0.518114352 0.111996354 557.4548677 1258622.067 0.031686077 0.047489154 5.34E-06 5.27251193 0.255645759 SHILEDDENS(ph)VDISMLK ddPTM_HeLa_A485_30min_R1 9 SHILEDDENSVDISMLK 17 0 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK ;;;;;;;; 267.57 3.33E-52 6550210000 6337128 5640595 4405686 6384321 8378478 6626534 10461492 10691192 5753212 10481711 TRUE FALSE FALSE 7746800.261 6300213.519 6035532.587 6733080.29 7544287.312 6973489.074 8226308.772 8069160.399 6907828.877 7868813.349 0.984494093 0.800656114 0.767019412 0.85566654 0.958757944 0.886218641 1.045431936 1.025460897 0.877874283 1 22.90771466 -5.937739927 1.750793215 0.977171165 0.841076745 0.356304435 0.073364839 0.377184547 2.361731225 0.028005702 0.032400283 1.15E-06 5.937739927 -0.13609442 SHILEDDENS(ph)VDISMLK ddPTM_HeLa_A486_30min_R1 8 SHILEDDENSVDISMLK 17 0 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK ;;;;;;; 349.19 3.27E-105 5485100000 4570112 4544225 2788424 2071101 4978568 5337088 6350394 6303448 4129402 6849210 TRUE FALSE FALSE 4249770.749 4184124.061 3868176.449 4821627.796 4354109.578 4678652.346 4761458.254 4868290.494 4487341.89 5134123.235 0.827750047 0.814963699 0.753424932 0.939133631 0.848072666 0.911285556 0.927414095 0.948222368 0.874023019 1 22.29168649 -4.458803975 0.178974489 1.012642837 0.619318822 0.582248421 0.045527967 11.59232037 0.403689849 0.138827544 1.055918908 3.48E-05 4.458803975 -0.393324015 SHILEQHPHTLDLS(ph)PSEK ddPTM_HeLa_A485_30min_R1 1 SHILEQHPHTLDLSPSEK 18 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 SHILEQHPHTLDLS(1)PSEK 237.45 2.13E-45 162570000 95472 96362 75492 124630 121650 103020 150560 139320 75996 169940 TRUE FALSE FALSE 116709.417 107630.6977 103419.6323 131438.2213 109538.0989 108413.9679 118391.626 105151.5516 91247.70012 127577.0855 0.914814887 0.843652269 0.810644262 1.03026512 0.858603239 0.849791853 0.928000711 0.824219735 0.71523581 1 16.9610097 -7.286901254 23.42562973 0.827295789 0.888472068 0.038175539 0.086723505 907.1470956 834591.528 0.045667155 0.021955942 5.17E-08 7.286901254 0.061176279 SHILEQHPHTLDLS(ph)PSEK ddPTM_HeLa_A486_30min_R1 1 SHILEQHPHTLDLSPSEK 18 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 SHILEQHPHTLDLS(1)PSEK 167.24 2.50E-12 93307000 97440 78919 45921 36315 86302 92477 115540 109180 66335 127370 TRUE FALSE FALSE 90609.95918 72665.17102 63702.84101 84543.15526 75477.19843 81068.12798 86630.66994 84322.09738 72084.97121 95475.72296 0.949036639 0.761085319 0.667215068 0.885493743 0.790538119 0.84909677 0.907358093 0.883178412 0.755008383 1 16.54284632 -6.451199282 4.257143071 0.877066079 0.804446158 0.13278812 0.089110003 0.500892136 17.31373479 0.032939521 0.028099716 3.54E-07 6.451199282 -0.072619922 SHISDQS(ph)PLSSK ddPTM_HeLa_A485_30min_R1 5 SHISDQSPLSSK 12 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SHISDQS(1)PLSSK;SHISDQS(1)PLSSK;SHISDQS(1)PLSSK;SHISDQS(1)PLSSK;SHISDQS(1)PLSSK ;;;; 179.74 6.27E-13 4276890000 5085934 7355090 6285030 2675232 11188230 5864720 8063810 8906700 6267790 5564530 TRUE FALSE FALSE 6217282.472 8215203.795 8610124.139 2821373.15 10074290.54 6171787.671 6340911.118 6722317.86 7525677.961 4177395.079 1.48831565 1.96658531 2.061122776 0.675390548 2.411620244 1.477424939 1.517910324 1.609212855 1.801524112 1 21.99417216 -10.42668842 3.058528587 0.988208855 1.669017274 0.174770648 0.435244224 63055116.73 76256022.2 6428064.569 0.106403893 3.74E-11 10.42668842 0.680808419 SHISDQS(ph)PLSSK ddPTM_HeLa_A486_30min_R1 1 SHISDQSPLSSK 12 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SHISDQS(1)PLSSK 134.81 1.28E-05 594660000 485900 491100 345630 23926 520390 388700 447040 442850 415990 190670 TRUE FALSE FALSE 451840.9192 452183.4474 479467.1923 55700.93715 455117.8338 340746.146 335185.8637 342022.7223 452048.3481 142924.9909 3.161384977 3.163781536 3.354677087 0.389721467 3.18431249 2.38409073 2.345187231 2.393022522 3.16283629 1 17.12489867 SHISDQS(ph)PLSSKR ddPTM_HeLa_A485_30min_R1 2 SHISDQSPLSSKR 13 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SHISDQS(0.921)PLS(0.033)S(0.045)KR;SHISDQS(0.999)PLSSKR ; 103.39 0.0003125 992690000 465480 826100 657640 192745 1096450 644500 838160 1044420 615130 427150 TRUE FALSE FALSE 569024.4201 922705.2089 900928.4027 203274.1713 987283.5881 678245.0234 659080.2689 788274.3574 738580.9487 320669.3661 1.774489491 2.877434848 2.809524382 0.633905801 3.07882103 2.115091415 2.055326572 2.458215348 2.303247602 1 18.29072701 -9.934274283 5.571736822 0.999998563 2.245484967 0.240143776 0.658234585 1.13E-05 2.17E-06 0.614712712 0.149089558 1.16E-10 9.934274283 1.245486403 SHISDQS(ph)PLSSKR ddPTM_HeLa_A486_30min_R1 2 SHISDQSPLSSKR 13 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SHISDQS(0.998)PLS(0.001)S(0.001)KR;SHIS(0.007)DQS(0.986)PLS(0.003)S(0.003)KR ; 105.28 0.00025229 707960000 764820 724700 579610 41926 883860 527660 683500 655390 571560 262970 TRUE FALSE FALSE 711210.0675 667272.1327 804050.5145 97605.84682 772998.0371 462562.6741 512481.0707 506172.0041 621103.281 197120.6004 3.60799463 3.385095883 4.078977606 0.495158023 3.921447255 2.346597328 2.599835176 2.567829051 3.150879613 1 17.58871903 -8.928761585 0.130285633 1.20E-30 4.078138857 0.263579138 0.970581072 29.6180433 1.350567781 28.22697363 12.20945525 1.18E-09 8.928761585 4.078138857 SHLDS(ph)PEAR ddPTM_HeLa_A485_30min_R1 1 SHLDSPEAR 9 0 K7ER08;K7EP90;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3;Q9BTD8 K7ER08 RBM42 RNA-binding protein 42 1 0 SHLDS(1)PEAR 149.38 5.56E-05 338230000 179170 260950 246810 199550 392730 306500 327180 496870 219250 254540 TRUE FALSE FALSE 219025.7484 291465.8325 338115.2896 210450.9112 353628.4222 322547.8661 257275.3202 375011.8534 263251.4639 191087.8625 1.146204398 1.525297467 1.769423161 1.101330605 1.850606405 1.687955802 1.346371857 1.962510065 1.377646181 1 17.54387662 -5.773744212 24.99984415 1.583605329 1.42296331 0.036609335 0.312344603 723.7490609 1470442.622 0.092554158 0.105688194 1.68E-06 5.773744212 -0.160642019 SHLDS(ph)PEAR ddPTM_HeLa_A486_30min_R1 2 SHLDSPEAR 9 0 K7ER08;K7EP90;Q9BTD8-4;Q9BTD8-2;Q9BTD8-3;Q9BTD8 K7ER08 RBM42 RNA-binding protein 42 1 0 SHLDS(1)PEAR;SHLDS(1)PEAR ; 153.34 3.86E-05 847490000 627060 625260 555260 325350 1024420 641830 937310 1014490 535080 710880 TRUE FALSE FALSE 583106.3321 575712.1204 770271.5424 757431.2423 895927.6913 562647.5402 702785.1241 783512.7732 581461.1652 532871.0209 1.094272928 1.080396752 1.445512164 1.421415713 1.681321851 1.055879412 1.318865347 1.470361011 1.091185563 1 19.02342685 -7.928555698 6.020383329 1.001358655 1.322871493 0.259175474 0.189128434 0.255620419 14.80569992 0.190290156 0.049407001 1.18E-08 7.928555698 0.321512838 SHLEPSGNPLPAT(ph)PTTSAPSAPPASSQGPDTAPRPS(ph)PPQEEAR ddPTM_HeLa_A486_30min_R1 1 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 2 0 SHLEPSGNPLPAT(0.963)PT(0.031)T(0.006)SAPS(0.035)APPAS(0.217)S(0.201)QGPDT(0.101)APRPS(0.446)PPQEEAR 135.38 6.02E-07 192880000 95588 89801 68501 21050 86336 74863 76961 76739 61303 65052 TRUE FALSE FALSE 88887.77482 82684.84171 95026.42172 49005.46381 75506.93383 65627.16421 57704.54379 59267.2049 66616.7934 48762.55578 1.822869482 1.695662592 1.948758021 1.004981446 1.548461368 1.34585161 1.183378165 1.215424498 1.366146469 1 15.57348612 -1 0.214647836 1.050161424 5.518082468 0.568857837 0.206472729 36.95691968 0.465607172 0.331822396 56.77830986 0.1 1 4.467921043 SHLEPSGNPLPATPTTSAPSAPPASSQGPDT(ph)APRPSPPQEEAR ddPTM_HeLa_A486_30min_R1 2 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 SHLEPSGNPLPATPTTSAPS(0.035)APPAS(0.173)S(0.173)QGPDT(0.453)APRPS(0.167)PPQEEAR;SHLEPSGNPLPATPT(0.001)T(0.001)S(0.001)APS(0.032)APPAS(0.15)S(0.15)QGPDT(0.4)APRPS(0.265)PPQEEAR ; 215.15 3.53E-32 1741700000 186038.6 174484.8 186186.3 38541.49 218153.7 206569.5 188834.5 217307.8 183648.7 194801.3 TRUE FALSE FALSE 172998.2548 160657.989 258282.6216 89726.5365 190790.8287 181085.0553 141586.1108 167831.5577 199567.5172 146021.7865 1.184742763 1.100233005 1.768795107 0.614473625 1.306591525 1.240123543 0.969623192 1.149359707 1.36669686 1 17.15582411 -5.253058249 24.99693813 1.108595967 1.326154481 0.170374337 0.258265666 1327.485366 3959252.082 0.068836434 0.116868574 5.58E-06 5.253058249 0.217558514 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPS(ph)PPQEEAR ddPTM_HeLa_A485_30min_R1 1 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 SHLEPSGNPLPATPTTSAPSAPPAS(0.051)S(0.268)QGPDT(0.172)APRPS(0.509)PPQEEAR 195.92 1.18E-23 1549400000 99253 135250 149810 98753 138310 120040 158460 147670 107970 162990 TRUE FALSE FALSE 121331.4874 151066.311 205230.9531 104147.6263 124539.3708 126325.1088 124603.7265 111453.701 129638.5886 122359.5926 0.991597674 1.234609463 1.677277186 0.85116029 1.017814526 1.032408707 1.018340482 0.910870154 1.059488561 1 16.90076768 -5.299998647 24.99998741 0.985403412 1.294506881 0.433385204 0.165975283 504.052209 326802.3217 0.047031565 0.069760415 5.01E-06 5.299998647 0.309103469 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPS(ph)PPQEEAR ddPTM_HeLa_A486_30min_R1 1 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 SHLEPSGNPLPATPTTSAPS(0.002)APPAS(0.034)S(0.034)QGPDT(0.306)APRPS(0.624)PPQEEAR 105.36 8.57E-07 1719200000 64630 67729 55003 13991 52830 69403 58693 66376 59081 68491 TRUE FALSE FALSE 60099.77075 62361.90738 76301.63463 32571.75507 46203.56878 60840.7635 44007.39061 51263.63378 64202.18865 51340.4078 1.170613428 1.214674952 1.486190662 0.634427276 0.899945496 1.185046362 0.8571687 0.998504608 1.250519647 1 15.64780713 -5.244626713 24.99649602 0.975729204 1.282911182 0.398315622 0.177569044 886.7024003 1318317.106 0.048997339 0.084571784 5.69E-06 5.244626713 0.307181978 SHLERHRRIHTGEK ddPTM_HeLa_A486_30min_R1 1 SHLERHRRIHTGEK 14 3 Q9NV72-2;Q9NV72;Q0VGE8;P17035-2;P17035;P0CJ79;C9K0H3;A2RRD8 Q9NV72-2 ZNF701;ZNF816;ZNF28;ZNF888;ZNF320 Zinc finger protein 701;Zinc finger protein 816;Zinc finger protein 28;Zinc finger protein 888;Zinc finger protein 320 0 0 59.898 0.036312 7822400 90531 126800 100970 43912 145770 148940 174870 153410 130690 163140 FALSE FALSE TRUE 84185.2444 116751.9062 140068.2881 102229.3552 127486.1673 130565.2971 131115.6764 118481.8919 142018.3144 122288.6821 0.688414029 0.954723726 1.145390445 0.835967429 1.042501768 1.067680956 1.072181613 0.968870462 1.161336535 1 16.89993136 -4.305048407 3.439944306 1.031983595 0.660336388 0.585680188 0.087639518 0.17779678 3.615660313 0.021442607 0.160725868 4.95E-05 4.305048407 -0.371647207 SHLGNVHDQDN ddPTM_HeLa_A485_30min_R1 1 SHLGNVHDQDN 11 0 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 0 127.52 0.00018619 72174000 42761 54270 53049 35472 80450 60567 75995 71939 57555 61895 FALSE FALSE TRUE 52273.03693 60616.40441 72674.03265 37409.74554 72440.11552 63738.19447 59758.04743 54295.84745 69105.76057 46465.71559 1.124980779 1.304540426 1.564035585 0.805104259 1.559001397 1.371725231 1.286067516 1.168514178 1.487241931 1 15.50387901 -10.15983976 4.627311129 0.999964982 1.296253603 0.144341559 0.216787441 8.15E-05 1.48E-05 0.199417225 0.048359527 6.92E-11 10.15983976 0.296288621 SHNVAAGS(ph)YEAPLPPGS(ph)FHGDFAYGTYR ddPTM_HeLa_A486_30min_R1 3 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 0 S(0.014)HNVAAGS(0.984)Y(0.002)EAPLPPGS(0.596)FHGDFAY(0.004)GT(0.395)Y(0.005)R;SHNVAAGS(1)YEAPLPPGS(0.697)FHGDFAY(0.006)GT(0.291)Y(0.007)R;SHNVAAGS(1)YEAPLPPGS(0.77)FHGDFAY(0.002)GT(0.225)Y(0.003)R ;; 138.69 5.86E-07 283178000 237864 266026 253416 104983 304715 212741 244327 263776 223236 225785 TRUE FALSE FALSE 221190.9619 244945.1309 351545.4619 244405.7295 266494.8033 186495.1784 183193.8004 203719.963 242586.2762 169246.9664 1.306912417 1.447264528 2.077115291 1.444077461 1.574591315 1.101911499 1.082405223 1.203684576 1.433327175 1 17.36877045 -6.254168607 23.38451744 1.171879695 1.584352299 0.465952244 0.216832616 221.9915354 713976.693 0.074699273 0.07310628 5.57E-07 6.254168607 0.412472604 SHNVAAGSYEAPLPPGS(ph)FHGDFAYGTYR ddPTM_HeLa_A485_30min_R1 4 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SHNVAAGSYEAPLPPGS(1)FHGDFAYGTYR;SHNVAAGSYEAPLPPGS(1)FHGDFAYGTYR;SHNVAAGS(0.086)YEAPLPPGS(0.878)FHGDFAY(0.008)GT(0.017)Y(0.011)R;SHNVAAGSYEAPLPPGS(1)FHGDFAYGTYR ;;; 169.98 3.21E-14 1785600000 250792 389328 347582 264843 442443 339823 449705 471837 316136 395481 TRUE FALSE FALSE 306579.8152 434856.5229 476167.0459 279310.7025 398391.8214 357615.6068 353621.853 356118.2359 379581.5954 296894.865 1.032620807 1.464681859 1.603823784 0.9407731 1.34186161 1.20451934 1.191067596 1.199475902 1.278505088 1 18.17959262 -13.99999985 0.138770136 0.109765785 1.351147561 0.144761983 0.182188702 262.7626021 2.239465497 64.52371502 1.154212153 1.00E-14 13.99999985 1.241381775 SHNVAAGSYEAPLPPGS(ph)FHGDFAYGTYR ddPTM_HeLa_A486_30min_R1 5 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SHNVAAGSYEAPLPPGS(0.928)FHGDFAYGT(0.071)YR;SHNVAAGS(0.001)YEAPLPPGS(0.999)FHGDFAYGTYR;SHNVAAGSYEAPLPPGS(0.803)FHGDFAY(0.014)GT(0.164)Y(0.019)R;SHNVAAGSYEAPLPPGS(1)FHGDFAYGTYR;SHNVAAGSYEAPLPPGS(1)FHGDFAYGTYR ;;;; 171.5 2.84E-14 1926850000 432657 500521 412220 167465 575000 454147 569139 538123 387491 475725 TRUE FALSE FALSE 402329.9785 460857.8931 571842.6236 389866.9832 502878.1383 398118.9606 426734.4025 415604.14 421079.0319 356600.3635 1.128237713 1.29236518 1.603595178 1.093288238 1.410200857 1.116428925 1.196674053 1.165461908 1.180814926 1 18.44394865 -6.277882619 24.51918947 1.146267201 1.309572786 0.267962221 0.142449976 957.5577903 1427848.756 0.04929354 0.043600352 5.27E-07 6.277882619 0.163305586 SHNVAAGSYEAPLPPGSFHGDFAYGT(ph)YR ddPTM_HeLa_A485_30min_R1 2 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SHNVAAGSYEAPLPPGS(0.255)FHGDFAY(0.181)GT(0.325)Y(0.239)R;SHNVAAGS(0.001)YEAPLPPGS(0.153)FHGDFAY(0.225)GT(0.33)Y(0.29)R ; 92.91 0.0041299 1134320000 206234 250690 272390 176688 353380 276940 373660 299800 208895 285070 TRUE FALSE FALSE 252110.0418 280006.0148 373158.3961 186340.018 318196.2464 291440.1502 293824.4885 226273.5799 250818.3104 214007.2953 1.178044148 1.308394718 1.743671381 0.870718065 1.486847661 1.361823436 1.372964824 1.057317133 1.172008225 1 17.70730045 -7.262581347 24.86899606 1.085996994 1.33610954 0.233225083 0.211850446 144.5609974 3148045.939 0.105172794 0.054974779 5.46E-08 7.262581347 0.250112546 SHPAMS(ph)PGTPGPTMGR ddPTM_HeLa_A485_30min_R1 3 SHPAMSPGTPGPTMGR 16 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GUC6;A0A1B0GUG2;A0A1B0GU09;A0A6I8PTU7 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 SHPAMS(1)PGTPGPTMGR;SHPAMS(1)PGTPGPTMGR;S(0.002)HPAMS(0.997)PGT(0.002)PGPTMGR ;; 148.19 4.54E-08 682490000 318732 488451 455958 329076 510446 436612 521383 564653 356995 441125 TRUE FALSE FALSE 389632.8338 545571.0955 624635.8382 347052.5886 459624.204 459472.3292 409985.2627 426170.9664 428640.6219 331160.6558 1.176567406 1.647451429 1.88620184 1.04798859 1.387919114 1.3874605 1.238025277 1.286900962 1.294358537 1 18.33717176 -7.732564456 0.224105571 0.908031212 1.588951226 0.260308982 0.217590303 3.657405706 0.796537958 0.991064291 0.778043275 1.85E-08 7.732564456 0.680920014 SHPAMS(ph)PGTPGPTMGR ddPTM_HeLa_A486_30min_R1 5 SHPAMSPGTPGPTMGR 16 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GUC6;A0A1B0GUG2;A0A1B0GU09;A0A6I8PTU7 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 SHPAMS(1)PGTPGPTMGR;SHPAMS(1)PGTPGPTMGR;SHPAMS(1)PGTPGPTMGR;SHPAMS(0.999)PGT(0.001)PGPTMGR;S(0.001)HPAMS(0.993)PGT(0.006)PGPTMGR ;;;; 162.76 5.16E-12 1305031000 886158 818146 669260 278272.5 911993 773396 851043 825216 615753 893833 TRUE FALSE FALSE 824042.9003 753313.1313 928415.3954 647832.4431 797602.3339 677982.2648 638103.04 637332.3311 669126.9658 670011.3989 1.229893852 1.124328829 1.385671045 0.966897644 1.190430992 1.011896612 0.952376394 0.951226102 0.998679973 1 19.35382611 -5.918968264 0.974918672 0.967961081 1.224238624 0.520849182 0.096255057 0.426601976 0.878614702 0.046467899 0.060822834 1.21E-06 5.918968264 0.256277543 SHPLDLS(ph)PNVQSR ddPTM_HeLa_A485_30min_R1 4 SHPLDLSPNVQSR 13 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 SHPLDLS(1)PNVQSR;SHPLDLS(1)PNVQSR;SHPLDLS(1)PNVQSR;SHPLDLS(1)PNVQSR ;;; 153.72 2.86E-08 608350000 673370 812340 721820 891430 1063370 788570 1060280 1073270 751670 1232910 TRUE FALSE FALSE 823158.8334 907336.0966 988851.2554 940126.5637 957497.1491 829858.3058 833742.5163 810048.8497 902523.2743 925568.227 0.889355111 0.980301689 1.068372084 1.01572908 1.034496562 0.896593338 0.900789906 0.875190857 0.975101832 1 19.81997981 -6.265515888 24.97629871 0.919938034 1.001620358 0.26195879 0.05582165 435.2547846 2666750.166 0.01980685 0.018082796 5.43E-07 6.265515888 0.081682324 SHPLDLS(ph)PNVQSR ddPTM_HeLa_A486_30min_R1 1 SHPLDLSPNVQSR 13 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 SHPLDLS(1)PNVQSR 119.51 8.14E-05 329540000 191110 222750 197240 98187 246210 223180 269880 284960 192800 293570 TRUE FALSE FALSE 177714.1759 205098.4788 273616.6103 228584.2981 215328.046 195646.3207 202353.1695 220080.8286 209512.0592 220058.1612 0.80757821 0.932019415 1.243383153 1.038744925 0.978505159 0.889066416 0.919544035 1.000103007 0.952075843 1 17.74752535 -5.987364913 8.712644018 0.948310576 1.016234692 0.048825223 0.106037447 0.504131742 265.7361962 0.035785332 0.039834633 1.03E-06 5.987364913 0.067924116 SHPYS(ph)PLPGLASVPGHMALPRPGVIK ddPTM_HeLa_A485_30min_R1 3 SHPYSPLPGLASVPGHMALPRPGVIK 26 1 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 SHPYS(1)PLPGLASVPGHMALPRPGVIK;SHPYS(1)PLPGLASVPGHMALPRPGVIK;S(0.004)HPY(0.014)S(0.982)PLPGLASVPGHMALPRPGVIK ;; 228.62 9.95E-39 1492410000 965280 1156880 952840 663780 1487450 1143800 1482570 1583000 916680 1121520 TRUE FALSE FALSE 1180003.206 1292167.052 1305335.167 700040.6206 1339354.255 1203687.599 1165806.808 1194766.768 1100649.268 841945.704 1.401519362 1.534739172 1.550379271 0.831455778 1.590784594 1.429649909 1.384657945 1.419054414 1.307268702 1 19.68336767 -8.165714199 3.346435226 1.000047833 1.391156112 0.256447519 0.200413512 1.22644222 22.23690806 0.192297162 0.05094258 6.83E-09 8.165714199 0.391108279 SHPYS(ph)PLPGLASVPGHMALPRPGVIK ddPTM_HeLa_A486_30min_R1 2 SHPYSPLPGLASVPGHMALPRPGVIK 26 1 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 SHPYS(1)PLPGLASVPGHMALPRPGVIK;SHPYS(1)PLPGLASVPGHMALPRPGVIK ; 222.63 2.07E-38 1211030000 1022040 827320 596090 58918 1013880 768400 968430 877590 744210 707270 TRUE FALSE FALSE 950400.2738 761760.1502 826912.0118 137164.0816 886709.7163 673602.6205 726118.571 677781.9147 808718.722 530164.9884 1.792650014 1.436836017 1.559725802 0.258719615 1.672516548 1.270552819 1.369608682 1.278435826 1.525409523 1 19.01608187 -4.584896837 2.120773397 1.232928979 1.757978243 0.175547885 0.373956801 0.704166507 5.455673978 0.101217299 0.547713609 2.60E-05 4.584896837 0.525049264 SHS(ph)AGEVGEDSR ddPTM_HeLa_A485_30min_R1 2 SHSAGEVGEDSR 12 0 A0A2R8Y6F3;Q9P2P5;A0A2R8YE75 A0A2R8Y6F3 HECW2 E3 ubiquitin-protein ligase HECW2 1 0 S(0.001)HS(0.999)AGEVGEDSR;SHS(1)AGEVGEDSR ; 179.8 8.55E-13 564460000 174335 250690 235280 200607 279630 265250 310250 301470 205006 289460 TRUE FALSE FALSE 213115.2193 280006.0148 322319.8628 211565.6524 251789.0554 279138.0798 243962.553 227534.0098 246148.8238 217302.9491 0.98072861 1.288551379 1.483274222 0.973597705 1.15870059 1.284557255 1.122684041 1.047082015 1.132744976 1 17.72934823 -7.510763738 0.663262093 1.008113595 1.208705516 0.139383886 0.144397969 1.352853776 1.27038791 0.142823477 0.067212892 3.08E-08 7.510763738 0.200591921 SHS(ph)AGEVGEDSR ddPTM_HeLa_A486_30min_R1 1 SHSAGEVGEDSR 12 0 A0A2R8Y6F3;Q9P2P5;A0A2R8YE75 A0A2R8Y6F3 HECW2 E3 ubiquitin-protein ligase HECW2 1 0 S(0.001)HS(0.999)AGEVGEDSR 124.47 0.00027054 0 128460 119330 97891 53265 165710 114500 132660 122300 85647 131970 TRUE FALSE FALSE 119455.6174 109873.8562 135797.0168 124003.6119 144925.1066 100374.1542 99467.06487 94454.95979 93070.95092 98923.85302 1.207551199 1.110691232 1.372742899 1.2535259 1.4650168 1.014660783 1.005491212 0.954824917 0.940834269 1 16.59403081 -6.399818478 6.955256101 0.976991642 1.275297166 0.73443353 0.089986573 0.140393428 7.387677105 0.033127176 0.029118828 3.98E-07 6.399818478 0.298305524 SHS(ph)AGRT(ph)PGRT(ph)PGK ddPTM_HeLa_A485_30min_R1 1 SHSAGRTPGRTPGK 14 2 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 3 0 S(0.163)HS(0.841)AGRT(0.998)PGRT(0.998)PGK 64.26 0.011099 89392000 149360 145980 95832 236930 198000 168220 270820 247710 122010 319560 TRUE FALSE FALSE 182584.6167 163051.0911 131284.2447 249872.886 178286.4248 177027.7391 212957.0946 186958.7341 146496.2879 239899.5731 0.76108771 0.679663949 0.547246679 1.041572866 0.74317108 0.737924361 0.887692679 0.779320829 0.610656726 1 17.87207106 -11.29136787 2.340004098 2.161912689 0.758282445 0.241111758 0.130615498 8547325.651 1244305.041 52687796.63 0.034389809 5.11E-12 11.29136787 -1.403630245 SHS(ph)AGRT(ph)PGRT(ph)PGK ddPTM_HeLa_A486_30min_R1 1 SHSAGRTPGRTPGK 14 2 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 3 0 S(0.009)HS(0.992)AGRT(1)PGRT(1)PGK 72.359 0.0052303 87517000 168250 152950 85522 113630 153460 183440 252240 216890 121950 275560 TRUE FALSE FALSE 156456.5438 140829.685 118638.4088 264536.3825 134211.6158 160809.0379 189126.8841 167508.8817 132520.7242 206557.9824 0.757446127 0.681792508 0.574358867 1.280688257 0.649752744 0.778517664 0.915611597 0.81095332 0.641566705 1 17.65618729 -11.54424429 2.20108472 4.265621084 0.793051138 0.101019225 0.189287409 5395870.473 540652.8049 88266388.06 0.046557475 2.86E-12 11.54424429 -3.472569946 SHS(ph)ANDSEEFFREDDGGADLHNATNLR ddPTM_HeLa_A485_30min_R1 1 SHSANDSEEFFREDDGGADLHNATNLR 27 1 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 S(0.026)HS(0.707)ANDS(0.267)EEFFREDDGGADLHNATNLR 136.79 1.54E-06 161370000 24863 34480 35105 31618 48696 36770 36496 46503 35198 41499 TRUE FALSE FALSE 30393.68857 38512.13606 48091.80034 33345.21128 43847.65526 38695.22034 28698.33146 35098.06634 42261.91574 31154.06303 0.975593089 1.236183416 1.543676672 1.070332664 1.407445803 1.242060154 0.921174597 1.126596756 1.356545877 1 14.92713271 -6.557933495 24.99754398 1.107341543 1.259969841 0.130555012 0.181187973 374.1123992 266776.6181 0.06912878 0.053547072 2.77E-07 6.557933495 0.152628297 SHS(ph)ANDSEEFFREDDGGADLHNATNLR ddPTM_HeLa_A486_30min_R1 1 SHSANDSEEFFREDDGGADLHNATNLR 27 1 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 S(0.005)HS(0.994)ANDS(0.001)EEFFREDDGGADLHNATNLR 184.36 1.94E-20 213570000 87740 96996 80414 25882 114140 92575 96708 113810 76358 104430 TRUE FALSE FALSE 81589.87909 89309.68371 111552.4544 60254.604 99823.49689 81154.03773 72510.63553 87897.94745 82976.77292 78280.04827 1.042281921 1.140899701 1.425043249 0.769731309 1.275209956 1.036714201 0.926297788 1.122865269 1.059999 1 16.25635703 -5.252267469 24.99997686 1.038897487 1.196557394 0.217305808 0.151357486 1134.338177 3091872.599 0.040141557 0.068326349 5.59E-06 5.252267469 0.157659907 SHS(ph)DNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 1 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.013)HS(0.987)DNDRPNCSWNTQYSSAYYTSR 345.95 7.74E-142 3435000000 45656 53652 42525 51685 77483 25976 58095 94092 45876 72468 TRUE FALSE FALSE 55812.01969 59926.13469 58256.76711 54508.42068 69768.52046 27336.06319 45682.52866 71015.78947 55082.8924 54403.06127 1.025898513 1.101521372 1.070836195 1.001936645 1.2824374 0.502472886 0.839705112 1.305363849 1.012496192 1 15.73140021 SHS(ph)DTSIASR ddPTM_HeLa_A485_30min_R1 1 SHSDTSIASR 10 0 H7C3H3;E9PEM3;H7C357;H0Y6E6;Q92622-3;Q92622-2;Q92622 H7C3H3 KIAA0226 Run domain Beclin-1 interacting and cysteine-rich containing protein 1 0 S(0.297)HS(0.668)DT(0.035)SIASR 73.927 0.0084078 220740000 34170 60408 59163 23887 50628 47639 48901 61855 51378 39837 TRUE FALSE FALSE 41770.99861 67472.19012 81049.85568 25191.88632 45587.29855 50133.30438 38452.90187 46684.96427 61689.09333 29906.36905 1.396725846 2.256114409 2.710120227 0.842358572 1.524334114 1.676342063 1.285776344 1.561037523 2.062740991 1 14.86816514 -5.259577778 24.99997667 1.454385796 2.13449955 0.344811528 0.43994781 195.0941697 2619958.84 0.121207427 0.197034358 5.50E-06 5.259577778 0.680113754 SHS(ph)DTSIASR ddPTM_HeLa_A486_30min_R1 1 SHSDTSIASR 10 0 H7C3H3;E9PEM3;H7C357;H0Y6E6;Q92622-3;Q92622-2;Q92622 H7C3H3 KIAA0226 Run domain Beclin-1 interacting and cysteine-rich containing protein 1 0 S(0.081)HS(0.895)DT(0.024)SIASR 92.99 0.0020384 267780000 56514 51321 58384 8640.8 86467 41293 49366 49901 58617 40819 TRUE FALSE FALSE 52552.66044 47254.13705 80991.84838 20116.21908 75621.50259 36198.6895 37014.10466 38539.63163 63697.96876 30597.65671 1.71753873 1.54437111 2.646995132 0.657443126 2.471480195 1.183054305 1.2097039 1.259561541 2.081792385 1 14.90113355 SHS(ph)ES(ph)PSRLPINR ddPTM_HeLa_A486_30min_R1 2 SHSESPSRLPINR 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 2 0 S(0.107)HS(0.894)ES(0.987)PS(0.011)RLPINR;S(0.025)HS(0.975)ES(0.877)PS(0.123)RLPINR ; 88.385 0.0019325 848390000 844760 869930 695570 241680 884280 801150 894430 900200 712040 944320 TRUE FALSE FALSE 785546.6863 800993.5786 964913.332 562643.2538 773365.3568 702312.2585 670634.1537 695244.1112 773760.2005 707856.1255 1.109754734 1.131576813 1.363148947 0.794855386 1.092545969 0.992168088 0.947415908 0.9821828 1.093103772 1 19.43309663 -5.25722548 24.99999588 0.988380357 1.194501817 0.491363494 0.100358739 312.3522596 1853098.486 0.026775752 0.044334017 5.53E-06 5.25722548 0.20612146 SHS(ph)ESPSRLPINR ddPTM_HeLa_A485_30min_R1 1 SHSESPSRLPINR 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.002)HS(0.499)ES(0.499)PSRLPINR 157.35 2.60E-07 0 125660 158720 152170 109230 194420 157380 203100 242810 154190 159750 TRUE FALSE FALSE 153612.6335 177280.9233 208464.0153 115196.9583 175062.8621 165620.1734 159706.0258 183260.4668 185134.5187 119927.265 1.280881654 1.478237024 1.738253727 0.96055687 1.459741971 1.381005174 1.33169072 1.528096774 1.543723345 1 16.87180016 -10.76880398 2.713065058 0.903049869 1.411298355 0.290283687 0.192960384 20246473.07 15862430.1 13084498.78 0.04749231 1.70E-11 10.76880398 0.508248485 SHS(ph)FCK ddPTM_HeLa_A485_30min_R1 1 SHSFCK 6 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 S(0.081)HS(0.919)FCK 62.546 0.027974 190140000 271900 219070 136970 274320 189900 222710 301260 355260 260430 440790 TRUE FALSE FALSE 332383.217 244688.3308 187640.9028 289305.407 170992.8892 234370.7512 236893.3399 268131.928 312695.9122 330909.1651 1.004454551 0.739442592 0.567046557 0.874274385 0.516736637 0.7082631 0.715886306 0.810288612 0.944959962 1 18.33607572 -7.696694125 2.104735276 0.998127167 0.722360228 0.348361907 0.130337131 0.341234552 2.808604417 0.118975407 0.035240757 2.01E-08 7.696694125 -0.275766939 SHS(ph)GS(ph)SSPS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 SHSGSSSPSPSR 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.012)HS(0.968)GS(0.556)S(0.48)S(0.363)PS(0.617)PS(0.005)R 62.357 0.020388 48614000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SHS(ph)GSSSPSPSR ddPTM_HeLa_A485_30min_R1 1 SHSGSSSPSPSR 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SHS(0.941)GS(0.016)S(0.016)S(0.027)PSPSR 94.191 0.0017204 8638600 8178.8 14087 11172 9700.7 12329 13484 13121 18650 13602 14601 TRUE FALSE FALSE 9998.145843 15734.35211 15304.98771 10230.62468 11101.48147 14190.00139 10317.59116 14076.05826 16331.79664 10961.23941 0.912136435 1.43545374 1.396282585 0.933345609 1.012794361 1.29456176 0.94127961 1.284166665 1.489958938 1 13.42012332 -10.65586074 10.2064661 0.999942176 1.188171278 0.066745341 0.211875597 0.000281215 9.48E-06 0.206936948 0.050174257 2.21E-11 10.65586074 0.188229102 SHS(ph)GT(ph)SPDNTAPPPPPPRPQPS(ph)HSR ddPTM_HeLa_A485_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 3 0 S(0.152)HS(0.84)GT(0.492)S(0.492)PDNT(0.024)APPPPPPRPQPS(0.556)HS(0.444)R 82.554 0.004536 116660000 55108 68871 61969 58338 91475 62135 89630 99385 61465 80997 TRUE FALSE FALSE 67366.58448 76924.86435 84893.91185 61524.85722 82367.42781 65388.29252 70479.81829 75010.67292 73800.46171 60805.93854 1.107894822 1.265088019 1.396145079 1.011823166 1.354595123 1.075360303 1.159094325 1.233607682 1.213704837 1 15.89192461 -6.02380669 1.155454313 1.158260022 1.231379998 0.063535734 0.124564747 1.631310707 4.58443382 0.057007792 0.064258488 9.47E-07 6.02380669 0.073119977 SHS(ph)GT(ph)SPDNTAPPPPPPRPQPS(ph)HSR ddPTM_HeLa_A486_30min_R1 2 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 3 0 S(0.155)HS(0.736)GT(0.555)S(0.555)PDNTAPPPPPPRPQPS(0.579)HS(0.421)R;S(0.198)HS(0.681)GT(0.561)S(0.561)PDNTAPPPPPPRPQPS(0.575)HS(0.425)R ; 108.28 0.0002706 665410000 167792 227413 155598 66157 233997 179518 207814 199056 164309 199605 TRUE FALSE FALSE 156030.6473 209391.9657 215849.7127 154016.8394 204646.9143 157370.8944 155816.7392 153735.2942 178551.4364 149622.6088 1.042828009 1.399467416 1.442627651 1.029368761 1.367753951 1.051785527 1.041398358 1.027487058 1.193345296 1 17.19096867 -6.280129021 23.93948695 1.06318335 1.262088953 0.332637516 0.136996062 564.4215209 722962.3554 0.047620288 0.042079872 5.25E-07 6.280129021 0.198905604 SHS(ph)GT(ph)SPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A486_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 S(0.127)HS(0.798)GT(0.569)S(0.506)PDNTAPPPPPPRPQPSHSR 104.91 0.011921 374590000 18308 19171 12383 6915.5 21561 19271 22064 21284 16406 21767 TRUE FALSE FALSE 17024.70374 17651.82014 17178.02923 16099.63349 18856.61833 16893.53995 16543.35383 16438.09783 17828.08529 16316.40152 1.043410443 1.081845168 1.052807459 0.986714716 1.155684868 1.035371674 1.013909459 1.007458526 1.09264811 1 13.99403529 -10.1419668 4.796922129 0.999996376 1.051274798 0.102760603 0.046204876 1.92E-06 3.43E-07 0.044277234 0.010737984 7.21E-11 10.1419668 0.051278423 SHS(ph)GTS(ph)PDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A485_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 S(0.162)HS(0.767)GT(0.309)S(0.762)PDNTAPPPPPPRPQPSHSR 92.623 0.0074829 449620000 29279 35548 32365 35234 39622 35006 48868 44774 36505 51771 TRUE FALSE FALSE 35792.01254 39705.02937 44338.16032 37158.7442 35677.09456 36838.86003 38426.95259 33793.1063 43831.21866 38865.44247 0.920921267 1.021602402 1.140811927 0.956086998 0.917964451 0.947856442 0.988717744 0.869489813 1.12776842 1 15.24620032 -4.244179924 22.77664471 0.991619434 0.920921071 0.070284394 0.080802868 3252.702254 4292226.53 0.020409569 0.50823481 5.70E-05 4.244179924 -0.070698363 SHS(ph)GTS(ph)PDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A486_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 S(0.131)HS(0.804)GT(0.406)S(0.659)PDNTAPPPPPPRPQPSHSR 131.97 1.16E-05 475830000 31338 32681 20594 9238 33445 30385 38039 34704 26896 38268 TRUE FALSE FALSE 29141.36803 30091.23854 28568.54833 21506.53086 29250.01624 26636.40763 28521.23986 26802.65678 29227.36694 28685.44372 1.015893926 1.049007254 0.995924923 0.749736733 1.019681499 0.928568785 0.994275708 0.934364378 1.018891924 1 14.80803121 -9.636641659 14.1279625 0.999999087 0.964429255 0.013163865 0.081232124 0 0 0.079722378 0.019335517 2.31E-10 9.636641659 -0.035569832 SHS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A485_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.09)HS(0.395)GT(0.395)S(0.12)PDNTAPPPPPPRPQPSHSR 95.459 0.0013658 869800000 46483 64067 57348 34813 80964 58349 68445 71561 57625 62247 TRUE FALSE FALSE 56822.98299 71559.07834 78563.41165 36714.74604 72902.93988 61404.06342 53821.16661 54010.55255 69189.80893 46729.96847 1.215985905 1.53133162 1.681221157 0.78567881 1.560089644 1.314018935 1.151748404 1.155801177 1.480630336 1 15.51206044 -13.99999999 0.099869389 0.037439699 1.52576249 0.125714039 0.24776525 389.9065422 2.645507634 79.13864803 4.185359196 1.00E-14 13.99999999 1.488322791 SHS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A486_30min_R1 3 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.055)HS(0.644)GT(0.15)S(0.15)PDNTAPPPPPPRPQPSHSR;S(0.044)HS(0.697)GT(0.13)S(0.13)PDNTAPPPPPPRPQPSHSR;S(0.06)HS(0.313)GT(0.313)S(0.313)PDNTAPPPPPPRPQPSHSR ;; 126.28 4.24E-06 3279130000 189555 223551 165286 61747 249521 202600 222888 229298 191110 213523 TRUE FALSE FALSE 176268.1734 205836.0046 229289.1657 143750.1365 218223.7495 177605.2719 167119.0649 177091.8509 207675.5687 160055.451 1.101294409 1.286029331 1.432560805 0.89812709 1.363425914 1.10964838 1.044132292 1.106440611 1.297522623 1 17.28821229 -5.242609056 24.99882881 1.128397388 1.27456826 0.188792847 0.147106478 1482.63954 1968325.563 0.038808788 0.067085794 5.72E-06 5.242609056 0.146170871 SHS(ph)LSGAR ddPTM_HeLa_A485_30min_R1 5 SHSLSGAR 8 0 A0A0J9YYJ3;Q9Y519 A0A0J9YYJ3 TMEM184B Transmembrane protein 184B 1 0 S(0.003)HS(0.822)LS(0.175)GAR;S(0.001)HS(0.986)LS(0.013)GAR;SHS(0.999)LSGAR;S(0.034)HS(0.731)LS(0.235)GAR;S(0.079)HS(0.906)LS(0.015)GAR ;;;; 111.61 0.00084359 880525000 328354 394953 285007 389762 297707 365411 457183 542280 391445 654648 TRUE FALSE FALSE 401395.2145 441139.3177 390442.9494 411053.7111 268066.2458 384543.3549 359502.1172 409284.9797 470004.421 491456.3015 0.816746501 0.897616566 0.794461172 0.836399309 0.545452861 0.782456861 0.731503729 0.83280035 0.956350381 1 18.90670362 -7.726649824 2.616230472 0.996978315 0.771978641 0.468459128 0.087099952 0.257824327 3.287939155 0.084947182 0.024607363 1.88E-08 7.726649824 -0.224999674 SHS(ph)LSGAR ddPTM_HeLa_A486_30min_R1 5 SHSLSGAR 8 0 A0A0J9YYJ3;Q9Y519 A0A0J9YYJ3 TMEM184B Transmembrane protein 184B 1 0 SHS(0.873)LS(0.127)GAR;S(0.001)HS(0.986)LS(0.013)GAR;S(0.003)HS(0.929)LS(0.067)GAR;S(0.014)HS(0.98)LS(0.005)GAR;SHS(0.997)LS(0.003)GAR ;;;; 92.239 0.0034006 468050000 374397 244920 319113 172193.3 287998 404171 305673 262830 370595 450242 TRUE FALSE FALSE 348153.7037 225511.6472 442682.0997 400874.7046 251874.6054 354308.4913 229190.3823 202989.3465 402718.473 337498.4726 1.031571198 0.668185682 1.311656602 1.187782278 0.746298504 1.049807688 0.679085688 0.601452638 1.19324532 1 18.36452145 -5.768284122 24.99934762 0.857000789 1.041244972 0.116214717 0.226662712 347.417318 1268884.925 0.071057227 0.082346462 1.70E-06 5.768284122 0.184244183 SHS(ph)LSQHTATSSK ddPTM_HeLa_A485_30min_R1 4 SHSLSQHTATSSK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(0.085)HS(0.907)LS(0.008)QHTATSSK;S(0.11)HS(0.735)LS(0.155)QHTATSSK;S(0.413)HS(0.578)LS(0.009)QHTATSSK;S(0.121)HS(0.792)LS(0.087)QHTATSSK ;;; 179.9 3.47E-17 658627000 1045230 1491660 1341840 651408 2122120 1346390 2012680 2039260 1350480 1226640 TRUE FALSE FALSE 1277737.807 1666096.661 1838242.455 686992.7696 1910834.282 1416884.898 1582654.476 1539128.288 1621508.949 920861.2226 1.387546545 1.809280943 1.996220939 0.746032901 2.075051305 1.538651931 1.71866774 1.671400912 1.760861364 1 19.81262423 -10.12604937 4.654299742 0.999945466 1.637248541 0.225723032 0.352071141 0.00018954 3.56E-05 0.324302401 0.078648182 7.48E-11 10.12604937 0.637303076 SHS(ph)LSQHTATSSK ddPTM_HeLa_A486_30min_R1 3 SHSLSQHTATSSK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(0.085)HS(0.831)LS(0.085)QHTATSSK;S(0.008)HS(0.97)LS(0.022)QHTATSSK;S(0.001)HS(0.996)LS(0.003)QHTATSSK ;; 218.66 1.97E-27 770030000 800540 1068100 875260 32135.3 1345350 1018550 1196550 1169140 1044530 544060 TRUE FALSE FALSE 744426.28 983459.866 1214184.112 74812.60243 1176603.658 892891.6569 897160.5342 902952.3441 1135070.701 407823.8348 1.825362366 2.411482072 2.977226951 0.183443428 2.885078207 2.189405279 2.199872734 2.214074478 2.783237772 1 18.63758657 SHS(ph)LSRPGPTEGDAEGEAEGPVGSTLGSYATLTR ddPTM_HeLa_A485_30min_R1 3 SHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTR 34 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 S(0.174)HS(0.762)LS(0.047)RPGPT(0.017)EGDAEGEAEGPVGSTLGSYATLTR;S(0.004)HS(0.886)LS(0.11)RPGPTEGDAEGEAEGPVGSTLGSYATLTR;S(0.011)HS(0.425)LS(0.425)RPGPT(0.138)EGDAEGEAEGPVGSTLGSYATLTR ;; 241.23 3.68E-51 889170000 102087 131233 135770 114000 185002 132631 176173 173157 130249 148596 TRUE FALSE FALSE 124795.901 146579.5578 185996.9729 120227.5313 166582.5513 139575.3541 138532.1993 130689.9743 156388.7796 111553.7519 1.118706443 1.313981424 1.667330499 1.07775426 1.493294026 1.251193722 1.241842582 1.171542615 1.401914117 1 16.76737951 -6.502212321 23.69489034 1.222176855 1.340837697 0.099265577 0.1826843 1022.077062 1171855.843 0.062902943 0.054780207 3.15E-07 6.502212321 0.118660842 SHS(ph)NLGVKDGDSGR ddPTM_HeLa_A485_30min_R1 2 SHSNLGVKDGDSGR 14 1 A0A087X0H5;P10912-4;P10912 A0A087X0H5 GHR Growth hormone receptor;Growth hormone-binding protein 1 0 S(0.001)HS(0.5)NLGVKDGDS(0.5)GR;SHS(0.75)NLGVKDGDS(0.25)GR ; 62.861 0.011091 666500000 496760 322370 208518 948630 331380 616690 739740 816560 393410 1048890 TRUE FALSE FALSE 607262.5482 360068.3673 285657.4854 1000451.255 298386.6437 648978.9348 581688.5059 616297.3797 472363.7784 787421.0264 0.771204385 0.45727553 0.362776045 1.270541707 0.378941676 0.824182887 0.738726153 0.782678337 0.599887179 1 19.58677571 -14 0.119095709 1.958428554 0.540674567 0.119213093 0.252980536 339.6144815 2.62424011 79.52903022 2.452393477 1.00E-14 14 -1.417753987 SHS(ph)PSASQSGSQLR ddPTM_HeLa_A485_30min_R1 10 SHSPSASQSGSQLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.004)HS(0.934)PS(0.044)AS(0.017)QSGSQLR;SHS(1)PSASQSGSQLR;SHS(1)PSASQSGSQLR;SHS(0.91)PS(0.089)ASQSGSQLR;SHS(0.741)PS(0.252)AS(0.002)QS(0.005)GSQLR;S(0.002)HS(0.998)PSASQSGSQLR;S(0.006)HS(0.993)PS(0.001)ASQSGSQLR;S(0.036)HS(0.963)PS(0.001)ASQSGSQLR;S(0.005)HS(0.993)PS(0.002)ASQSGSQLR;S(0.008)HS(0.984)PS(0.008)ASQSGSQLR ;;;;;;;;; 321.93 2.50E-69 16698096000 2703657 4414329 4286818 2112526 5435764 3551417 4585429 5142274 3734075 3810899 TRUE FALSE FALSE 3305076.172 4930546.377 5872690.368 2227927.946 4894560.25 3737363.703 3605714.635 3881123.239 4483469.602 2860912.014 1.155252645 1.723417691 2.052733653 0.778747454 1.71083914 1.306353948 1.260337479 1.356603496 1.567146973 1 21.4480437 -5.246547132 24.99987555 1.315592447 1.651762884 0.20604729 0.320086824 1377.605764 2312607.546 0.08430797 0.145272681 5.67E-06 5.246547132 0.336170437 SHS(ph)PSASQSGSQLR ddPTM_HeLa_A486_30min_R1 8 SHSPSASQSGSQLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.001)HS(0.998)PS(0.001)ASQSGSQLR;SHS(1)PSASQSGSQLR;S(0.001)HS(0.999)PSASQSGSQLR;SHS(1)PSASQSGSQLR;S(0.001)HS(0.999)PSASQSGSQLR;S(0.055)HS(0.91)PS(0.035)ASQSGSQLR;S(0.061)HS(0.879)PS(0.061)ASQSGSQLR;S(0.168)HS(0.82)PS(0.013)ASQSGSQLR ;;;;;;; 303.45 1.51E-58 23618597000 7730663 7959357 7358447 633464 9709835 6589778 7565612 7521607 7419965 5274854 TRUE FALSE FALSE 7188783.445 7328628.564 10207834.74 1474736.205 8491936.954 5776798.19 5672615.857 5809101.282 8063133.54 3953996.225 1.818105794 1.853473839 2.581650099 0.3729736 2.147684639 1.461002455 1.434653837 1.469172187 2.03923653 1 21.91488006 -1.000065647 0.043328629 1.59E-09 4.395542356 0.111751023 0.557137937 1579.612834 5.209166959 137.7530721 492.204815 0.099984885 1.000065647 4.395542355 SHS(ph)PSIDGTPK ddPTM_HeLa_A485_30min_R1 1 SHSPSIDGTPK 11 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 S(0.108)HS(0.745)PS(0.148)IDGTPK 103.08 0.00070324 309760000 412990 310270 271210 653210 485530 361830 583460 465800 350760 790220 TRUE FALSE FALSE 504858.2007 346553.3775 371541.865 688893.2083 437188.9284 380774.8593 458799.0046 351561.8197 421154.3146 593232.6969 0.851028953 0.58417781 0.626300382 1.161252931 0.73696027 0.641864249 0.773387925 0.592620436 0.709931055 1 19.17823859 -5.980797275 24.99969235 0.716568938 0.798560615 0.018063957 0.177336365 934.2794337 1216315.748 0.056089825 0.06359059 1.05E-06 5.980797275 0.081991677 SHS(ph)PSSPDPDTPSPVGDSR ddPTM_HeLa_A485_30min_R1 1 SHSPSSPDPDTPSPVGDSR 19 0 H0YDB2;E9PNJ4;G0XQ39;Q13586 H0YDB2 STIM1 Stromal interaction molecule 1 1 0 S(0.155)HS(0.752)PS(0.04)S(0.053)PDPDTPSPVGDSR 115.36 2.18E-06 0 120430 186870 153820 101770 164330 155880 157850 228410 156990 174370 TRUE FALSE FALSE 147219.238 208722.8209 210724.419 107329.4374 147968.7282 164041.6358 124124.058 172392.0894 188496.453 130902.768 1.124645722 1.594487451 1.609778175 0.819917249 1.13037127 1.253156356 0.948215686 1.316947624 1.439973011 1 16.99813608 -5.240766292 24.93174649 1.140601407 1.458122144 0.314368609 0.211167151 977.3415794 1178672.691 0.057997604 0.100309849 5.74E-06 5.240766292 0.317520736 SHS(ph)PVKRPR ddPTM_HeLa_A486_30min_R1 2 SHSPVKRPR 9 2 H3BUV2;P78549-3;P78549-2;P78549;H3BRL9;A0A494C106;H3BPD5 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 S(0.001)HS(0.999)PVKRPR;S(0.004)HS(0.996)PVKRPR ; 74.962 0.0051788 597020000 281730 291130 187122 148691 284840 364520 365180 316930 308930 424990 TRUE FALSE FALSE 261982.1819 268059.7985 259580.6497 346160.1624 249112.7112 319549.2286 273808.1015 244771.9575 335708.3011 318569.7378 0.822369958 0.84144778 0.814831476 1.086607174 0.781972302 1.003074651 0.859491876 0.768346546 1.053798466 1 18.2812497 -1.000017797 0.022462966 1.577749279 1.35E-07 0.144744655 0.104878664 5540.815086 9.603309043 241.0418595 468.0979321 0.099995902 1.000017797 -1.577749144 SHS(ph)SLPPNNSYADFER ddPTM_HeLa_A485_30min_R1 1 SHSSLPPNNSYADFER 16 0 O43293 O43293 DAPK3 Death-associated protein kinase 3 1 0 S(0.066)HS(0.467)S(0.467)LPPNNSYADFER 59.862 0.00864 0 161080 190000 195820 189890 234890 195380 225810 247820 192440 267870 TRUE FALSE FALSE 196911.6903 212218.8472 268261.9668 200263.2099 211503.5269 205609.7947 177563.8488 187041.7564 231060.9428 201094.9388 0.979197644 1.0553167 1.334006556 0.995863999 1.051759573 1.022451365 0.88298517 0.930116678 1.149014213 1 17.61751725 SHS(ph)SLPPNNSYADFER ddPTM_HeLa_A486_30min_R1 1 SHSSLPPNNSYADFER 16 0 O43293 O43293 DAPK3 Death-associated protein kinase 3 1 0 S(0.008)HS(0.496)S(0.496)LPPNNSYADFER 122.19 2.63E-05 351690000 113780 118950 107600 31644 154250 124660 156900 168180 114840 104340 TRUE FALSE FALSE 105804.6096 109523.9688 149265.6016 73668.8312 134902.5267 109280.7167 117641.9605 129889.0853 124794.4237 78212.58486 1.352782417 1.400336902 1.908460152 0.941905083 1.724818671 1.397226761 1.504130834 1.660718484 1.59557984 1 16.25511314 SHS(ph)SPASLQLGTGAGAAGSPAQQHAHLR ddPTM_HeLa_A485_30min_R1 3 SHSSPASLQLGTGAGAAGSPAQQHAHLR 28 0 Q9GZV5;C9JR84;C9J038 Q9GZV5 WWTR1 WW domain-containing transcription regulator protein 1 1 0 S(0.111)HS(0.515)S(0.374)PASLQLGTGAGAAGSPAQQHAHLR;S(0.12)HS(0.856)S(0.024)PASLQLGTGAGAAGSPAQQHAHLR;S(0.152)HS(0.828)S(0.02)PASLQLGTGAGAAGSPAQQHAHLR ;; 315.87 6.69E-109 2222980000 499690 985315 988601 291717 1198380 704531 937720 1050280 837665 571759 TRUE FALSE FALSE 610844.3166 1100539.018 1354325.649 307652.761 1079065.079 741419.1537 737368.4615 792697.1832 1005776.682 429230.0037 1.423116537 2.563984364 3.155244594 0.716755023 2.513955385 1.72732369 1.717886576 1.846788846 2.343211502 1 18.7113914 -11.01652829 0.328112399 4.41E-25 2.072081454 0.166916278 0.65138697 66.73446835 3.323708274 52.99746944 0.576550862 9.63E-12 11.01652829 2.072081454 SHS(ph)SPASLQLGTGAGAAGSPAQQHAHLR ddPTM_HeLa_A486_30min_R1 2 SHSSPASLQLGTGAGAAGSPAQQHAHLR 28 0 Q9GZV5;C9JR84;C9J038 Q9GZV5 WWTR1 WW domain-containing transcription regulator protein 1 1 0 S(0.07)HS(0.465)S(0.465)PASLQLGTGAGAAGSPAQQHAHLR;S(0.118)HS(0.84)S(0.042)PASLQLGTGAGAAGSPAQQHAHLR ; 288.57 2.17E-78 2722030000 562660 608870 597280 12456.5 779000 403570 477690 492330 587830 157509 TRUE FALSE FALSE 523220.4396 560620.9237 828562.8117 28999.36152 681290.5561 353781.6366 358166.9095 380237.2065 638783.5777 118067.7212 4.431528231 4.748299688 7.017691232 0.24561634 5.770337136 2.996429787 3.0335718 3.220500935 5.410315125 1 16.84925507 -5.23330487 24.96257251 3.29379706 5.334085204 0.270075153 1.712297316 1043.413704 925776.0676 0.440495153 0.762764839 5.84E-06 5.23330487 2.040288144 SHS(ph)SPSQIPK ddPTM_HeLa_A485_30min_R1 1 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.009)HS(0.761)S(0.23)PSQIPK 152.47 2.22E-06 784400000 1457400 1555100 1115300 1726200 1942300 1698600 2273500 2431100 1414600 2532600 TRUE FALSE FALSE 1781593.602 1736955.417 1527895.882 1820497.935 1748917.792 1787536.069 1787748.152 1834868.913 1698497.245 1901269.429 0.937054778 0.913576682 0.803618813 0.957517071 0.919868465 0.940180304 0.940291852 0.965075694 0.893349053 1 20.85853156 SHS(ph)SPSQIPK ddPTM_HeLa_A486_30min_R1 2 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.075)HS(0.463)S(0.463)PSQIPK;S(0.016)HS(0.593)S(0.391)PS(0.001)QIPK ; 136.38 2.94E-05 1049840000 2620900 2627500 1540360 883580 2710100 2833300 3404100 3319000 2054010 3186800 TRUE FALSE FALSE 2437188.444 2419287.331 2136828.644 2057018.894 2370173.987 2483756.253 2552358.175 2563336.153 2232053.241 2388804.537 1.020254444 1.01276069 0.894517995 0.861108082 0.99220089 1.039748633 1.068466731 1.073062326 0.934380861 1 21.18785738 -5.995784044 24.99144329 1.028914131 0.945406951 0.275728319 0.057652478 160.5523218 951713.6547 0.019240531 0.021734736 1.01E-06 5.995784044 -0.083507181 SHS(ph)SSEAYEPR ddPTM_HeLa_A485_30min_R1 5 SHSSSEAYEPR 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 S(0.026)HS(0.911)S(0.063)SEAYEPR;SHS(0.942)S(0.054)S(0.003)EAYEPR;S(0.001)HS(0.998)S(0.001)SEAYEPR;S(0.015)HS(0.922)S(0.062)S(0.001)EAYEPR;S(0.001)HS(0.973)S(0.026)S(0.001)EAYEPR ;;;; 276.73 9.49E-35 8454260000 849438 1486764 1337383 530330 1632540 1144010 1401870 1537580 1213590 1059384 TRUE FALSE FALSE 1038392.553 1660628.117 1832136.625 559300.585 1469998.585 1203908.595 1102349.022 1160486.094 1457146.381 795299.0653 1.305662986 2.088054908 2.303707756 0.703258195 1.848359503 1.513780975 1.386081124 1.459182017 1.832199288 1 19.60113795 -12.00130829 0.148390252 1.45E-16 1.823827238 0.140515056 0.429018437 137.1321548 2.134985413 48.34777451 2.538064048 9.97E-13 12.00130829 1.823827238 SHS(ph)SSEAYEPR ddPTM_HeLa_A486_30min_R1 5 SHSSSEAYEPR 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 SHS(0.952)S(0.048)SEAYEPR;S(0.117)HS(0.878)S(0.005)SEAYEPR;S(0.001)HS(0.483)S(0.483)S(0.032)EAYEPR;SHS(0.999)S(0.001)SEAYEPR;S(0.042)HS(0.951)S(0.007)SEAYEPR ;;;; 278.79 7.95E-35 9466050000 1804018 2418250 3154180 167208 3195600 1683226 1835498 2020446 2270615 941451 TRUE FALSE FALSE 1677565.654 2226619.063 4375562.968 389268.6742 2794778.05 1475566.69 1376236.986 1560434.552 2467433.736 705705.5418 2.377146777 3.15516732 6.200267263 0.551602122 3.96026088 2.09090988 1.950157544 2.211169474 3.496406915 1 19.42870681 -5.276369649 24.98813171 2.291417574 3.835291494 0.263680362 1.314409596 1145.40916 1917017.899 0.360891918 0.537757843 5.29E-06 5.276369649 1.54387392 SHS(ph)TEPNLSSFLNDPNPMK ddPTM_HeLa_A485_30min_R1 1 SHSTEPNLSSFLNDPNPMK 19 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.131)HS(0.737)T(0.131)EPNLSSFLNDPNPMK 125.11 4.13E-06 179560000 165400 176980 141860 175210 248620 167200 280440 259920 169720 251670 TRUE FALSE FALSE 202192.6594 197676.2715 194339.9173 184781.2786 223866.5198 175954.3335 220521.703 196174.2125 203781.2472 188933.3006 1.070180104 1.046275436 1.028616536 0.978023874 1.184897099 0.931303973 1.167193408 1.038325228 1.078588298 1 17.52751748 SHS(ph)VPENMVEPPLSGR ddPTM_HeLa_A485_30min_R1 1 SHSVPENMVEPPLSGR 16 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.277)HS(0.723)VPENMVEPPLSGR 95.703 0.00054687 201240000 117870 147100 122600 126130 173580 131920 183560 190280 136710 155000 TRUE FALSE FALSE 144089.7749 164302.0654 167954.8418 133020.1625 156297.7657 138827.1272 144340.9065 143613.5317 164146.443 116361.3526 1.238295806 1.411998587 1.44339025 1.143164458 1.343210287 1.19306904 1.24045401 1.234203011 1.410661181 1 16.82825245 -12.70145171 0.307643278 6.45E-35 1.309186928 0.434057322 0.099024439 116.7150766 2.257462003 74.73469237 0.097793773 1.99E-13 12.70145171 1.309186928 SHSAGRT(ph)PGRT(ph)PGK ddPTM_HeLa_A485_30min_R1 1 SHSAGRTPGRTPGK 14 2 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 2 0 SHS(0.002)AGRT(0.998)PGRT(1)PGK 117.26 0.00023353 223540000 198320 209110 133710 282440 308160 265350 407570 418270 181150 416310 TRUE FALSE FALSE 242435.5998 233563.5955 183174.8931 297868.982 277478.5084 279243.3157 320489.34 315688.6267 217505.1434 312531.5786 0.775715532 0.747327987 0.586100432 0.953084432 0.887841509 0.893488322 1.025462263 1.010101533 0.695946132 1 18.25364244 -5.277573287 24.79057274 0.925611103 0.707475981 0.506403248 0.099789104 572.3910808 879506.8651 0.027926705 0.041570233 5.28E-06 5.277573287 -0.218135121 SHSAGRT(ph)PGRT(ph)PGK ddPTM_HeLa_A486_30min_R1 3 SHSAGRTPGRTPGK 14 2 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 2 0 S(0.001)HS(0.014)AGRT(0.985)PGRT(1)PGK;S(0.024)HS(0.16)AGRT(0.816)PGRT(1)PGK;S(0.093)HS(0.117)AGRT(0.793)PGRT(0.998)PGK ;; 79.511 0.0086439 1085944000 847952 621457 443452 549522 881659 914405 1327164 1162388 597570 1231235 TRUE FALSE FALSE 788514.9436 572210.484 615168.4905 1279314.987 771073.1071 801595.0081 995093.5299 897737.6272 649367.8487 922925.742 0.85436445 0.619996234 0.666541697 1.386151593 0.835466032 0.868536841 1.078194577 0.972708406 0.703597071 1 19.81585505 SHSDASVGSHSSTESEHGSS(ph)SPR ddPTM_HeLa_A485_30min_R1 3 SHSDASVGSHSSTESEHGSSSPR 23 0 Q6XZF7;A0A1C7CYY6;A0A1B0GTX1;Q6XZF7-2 Q6XZF7 DNMBP Dynamin-binding protein 1 0 SHSDASVGSHSSTESEHGS(0.169)S(0.764)S(0.067)PR;SHSDASVGSHSSTESEHGS(0.021)S(0.964)S(0.015)PR;SHSDASVGSHS(0.01)S(0.01)T(0.01)ES(0.052)EHGS(0.04)S(0.438)S(0.438)PR ;; 282.79 2.87E-75 2534824000 189107.9 843848.6 1152488 64715.76 1029658.5 283459.7 403748.3 287002 608431.5 144561.8 TRUE FALSE FALSE 231174.2999 942529.3533 1578841.27 68251.0181 927142.0844 298301.2116 317484.1774 216614.3095 730538.1212 108525.2037 2.130143893 8.684889048 14.54815302 0.628895554 8.543103838 2.748681425 2.925441893 1.995981598 6.731506564 1 16.72767061 -5.901034554 1.308687399 3.194491115 7.777863138 0.173048882 3.879881486 0.737999847 2.644534691 1.606663904 1.993600331 1.26E-06 5.901034554 4.583372023 SHSDASVGSHSSTESEHGSS(ph)SPR ddPTM_HeLa_A486_30min_R1 3 SHSDASVGSHSSTESEHGSSSPR 23 0 Q6XZF7;A0A1C7CYY6;A0A1B0GTX1;Q6XZF7-2 Q6XZF7 DNMBP Dynamin-binding protein 1 0 SHSDASVGSHSSTESEHGS(0.062)S(0.786)S(0.152)PR;SHSDASVGSHS(0.005)S(0.005)T(0.005)ES(0.118)EHGS(0.085)S(0.391)S(0.391)PR;SHSDASVGSHSSTES(0.001)EHGS(0.079)S(0.46)S(0.46)PR ;; 260.47 2.25E-61 917607000 236628.1 343106.7 491609.8 183.8 398899.4 81423.2 116968.6 120792.2 375296.4 15288.6 TRUE FALSE FALSE 220041.6921 315917.6755 681974.2803 427.8956887 348865.7177 71378.03343 87701.81911 93290.45294 407827.3941 11460.23505 19.20045193 27.566422 59.50787898 0.037337427 30.44141034 6.228321944 7.652706838 8.140361218 35.58630276 1 13.48434901 -5.285793422 24.99966512 10 34.63907587 0.320181074 14.77426806 795.2532256 816333.4876 4.139918966 6.14377127 5.18E-06 5.285793422 24.63907587 SHSDASVGSHSSTESEHGSSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SHSDASVGSHSSTESEHGSSSPR 23 0 Q6XZF7;A0A1C7CYY6;A0A1B0GTX1;Q6XZF7-2 Q6XZF7 DNMBP Dynamin-binding protein 1 0 SHSDASVGSHSSTESEHGS(0.008)S(0.44)S(0.552)PR;SHSDASVGSHSSTESEHGS(0.048)S(0.271)S(0.681)PR ; 200.99 6.50E-29 446074000 169021 206746 283010 2792.5 256408 66194.9 75018 79296.9 220030 19224.2 TRUE FALSE FALSE 157173.5007 190362.694 392599.0513 6501.081125 224246.9177 58028.44626 56247.70294 61242.72691 239102.3776 14410.33519 10.90699825 13.21015032 27.2442692 0.451140174 15.56153377 4.026863046 3.903289007 4.249916889 16.59242303 1 13.81481627 -5.276883332 24.99878408 6.837379493 16.72944171 0.354428208 6.528258712 902.486788 1460833.346 1.798357908 2.678169206 5.29E-06 5.276883332 9.892062215 SHSDNDRPNCS(ph)WNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 2 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.215)HS(0.215)DNDRPNCS(0.57)WNTQYSSAYYTSR;S(0.219)HS(0.219)DNDRPNCS(0.562)WNTQYSSAYYTSR ; 208.92 4.43E-29 6739200000 225296 280670 233437 316970 351820 278270 342620 364300 264024 369260 TRUE FALSE FALSE 275412.3179 313491.915 319795.0604 334285.2685 316791.5655 292839.7869 269416.4381 274954.8538 317011.195 277210.2777 0.993514094 1.130881285 1.153619061 1.205890601 1.142784344 1.05638142 0.971884738 0.991863852 1.143576629 1 18.08062122 -6.389262993 4.288250025 1.024898893 1.131364726 0.331215858 0.066299851 0.272119002 8.220140573 0.025054086 0.021807146 4.08E-07 6.389262993 0.106465834 SHSDNS(ph)PNAFK ddPTM_HeLa_A485_30min_R1 3 SHSDNSPNAFK 11 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-6;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SHS(0.001)DNS(0.999)PNAFK;SHS(0.002)DNS(0.998)PNAFK;SHS(0.001)DNS(0.999)PNAFK ;; 166.38 3.76E-08 1022735000 1052498 920975 801123 1453911 1389010 1070319 1363618 1265268 1098521 1860420 TRUE FALSE FALSE 1286622.549 1028675.015 1097491.735 1533334.476 1250715.287 1126359.248 1072269.875 954959.0391 1318984.088 1396651.532 0.921219445 0.736529471 0.78580212 1.097864743 0.895509909 0.806471207 0.767743313 0.683748965 0.944390249 1 20.41354068 -7.98865613 24.98595293 1.000000095 0.837585221 0.203812736 0.109772813 282.2354432 621648.4668 0.112879958 0.02914548 1.03E-08 7.98865613 -0.162414874 SHSDNS(ph)PNAFK ddPTM_HeLa_A486_30min_R1 4 SHSDNSPNAFK 11 0 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-6;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SHSDNS(1)PNAFK;SHSDNS(1)PNAFK;SHSDNS(1)PNAFK;SHSDNS(1)PNAFK ;;; 148.52 5.46E-07 1174780000 2152930 2119540 1236140 710850 1986380 2280220 2407860 2395820 1745360 2659410 TRUE FALSE FALSE 2002020.725 1951579.931 1714806.513 1654894.724 1737229.698 1998909.64 1805387.96 1850344.086 1896649.21 1993476.426 1.00428613 0.9789832 0.860209075 0.830155151 0.871457357 1.002725497 0.905648011 0.928199633 0.95142796 1 20.92685511 -6.24586959 24.97885649 0.949865689 0.905812234 0.148715769 0.056364591 1991.552917 3195081.491 0.020572686 0.020506745 5.68E-07 6.24586959 -0.044053454 SHSES(ph)PSRLPINR ddPTM_HeLa_A485_30min_R1 1 SHSESPSRLPINR 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 SHS(0.087)ES(0.913)PSRLPINR 164.15 3.79E-12 491380000 120140 155370 154740 89345 197010 149790 181930 232390 152380 147830 TRUE FALSE FALSE 146864.7285 173539.17 211984.7653 94225.69112 177394.9927 157632.7728 143059.1693 175395.9881 182961.2683 110978.7016 1.323359585 1.563715987 1.910139173 0.849043012 1.598459795 1.42038761 1.289068688 1.580447289 1.648616046 1 16.7599233 -10.73463233 2.707754346 0.911472912 1.463558033 0.216124945 0.26555017 45588211.77 35942450.17 27129429.44 0.064130712 1.84E-11 10.73463233 0.552085121 SHSES(ph)PSRLPINR ddPTM_HeLa_A486_30min_R1 2 SHSESPSRLPINR 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.007)HS(0.091)ES(0.883)PS(0.019)RLPINR;SHS(0.359)ES(0.641)PSRLPINR ; 126.77 1.35E-05 376360000 485700 496870 413000 91117 657940 521500 513790 541330 439650 405210 TRUE FALSE FALSE 451654.9382 457496.2116 572924.6605 212124.9808 575415.0302 457162.6322 385234.3077 418080.9762 477759.216 303742.7785 1.486965189 1.506196176 1.886216566 0.69837045 1.894415508 1.505097947 1.268291248 1.376430999 1.572907242 1 18.21249058 -12.04345784 0.306638885 2.69E-11 1.490805654 0.159583658 0.318496992 140.4524906 3.856767667 91.29819803 0.305408022 9.05E-13 12.04345784 1.490805654 SHSESASPSALSS(ph)SPNNLSPTGWSQPK ddPTM_HeLa_A485_30min_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALS(0.008)S(0.554)S(0.439)PNNLSPTGWSQPK 147.26 3.67E-09 747820000 109150 183110 123360 101990 192610 116600 185240 200510 137420 166070 TRUE FALSE FALSE 133430.0409 204523.1217 168995.9974 107561.4554 173433.0721 122704.9957 145661.9607 151334.6081 164998.9335 124671.8053 1.070250331 1.64049218 1.355526994 0.862756861 1.391117035 0.984224103 1.168363291 1.213863935 1.323466305 1 16.92777571 -5.030958418 24.87314166 1.146431778 1.391030917 0.202140219 0.197381951 827.7214886 665021.9347 0.050437936 0.087497789 9.31E-06 5.030958418 0.244599139 SHSESASPSALSS(ph)SPNNLSPTGWSQPK ddPTM_HeLa_A486_30min_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALS(0.075)S(0.462)S(0.462)PNNLSPTGWSQPK 113.6 0.00021009 741590000 289340 292610 190880 33655 281840 252270 321880 306960 248230 229770 TRUE FALSE FALSE 269058.7602 269422.5179 264793.8479 78350.54083 246488.9991 221147.4923 241342.2195 237071.9089 269746.7763 172234.0964 1.562168965 1.564280961 1.537406666 0.45490726 1.431127775 1.283993686 1.401245308 1.376451665 1.566163622 1 17.39401125 -5.045134552 24.99941448 1.231800062 1.560132829 0.217335295 0.293463035 683.9144685 378810.0881 0.081296244 0.140817578 9.01E-06 5.045134552 0.328332766 SHSESASPSALSSS(ph)PNNLS(ph)PTGWSQPK ddPTM_HeLa_A485_30min_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 2 0 SHSESASPSALS(0.005)S(0.167)S(0.828)PNNLS(0.955)PT(0.045)GWSQPK 115.47 0.00022003 288190000 191180 212680 204180 264000 315820 223930 326480 315680 214330 366290 TRUE FALSE FALSE 233707.3314 237551.0759 279714.6786 278421.6515 284375.8519 235654.6285 256724.8809 238258.985 257344.065 274980.6441 0.849904662 0.863882899 1.017215883 1.012513635 1.034166797 0.856986241 0.933610734 0.866457295 0.935862471 1 18.06897055 -9.430457543 0.004626438 1.903897445 6.84E-07 0.046934385 0.068941703 121773.2202 136.5679936 28701.7903 27502.54365 3.71E-10 9.430457543 -1.903896761 SHSESASPSALSSS(ph)PNNLSPTGWSQPK ddPTM_HeLa_A485_30min_R1 3 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALSS(0.008)S(0.992)PNNLSPTGWSQPK;SHSESASPSALS(0.002)S(0.051)S(0.947)PNNLSPTGWSQPK;SHSESASPSALS(0.017)S(0.234)S(0.749)PNNLSPTGWSQPK ;; 251.39 5.66E-51 2908930000 637663 730979 628803 484457 1047829 773597 1057468 1152790 754611 914527 TRUE FALSE FALSE 779508.9344 816460.6354 861423.3964 510921.6592 943503.4656 814101.3427 831531.3231 870066.445 906054.506 686552.2495 1.135396374 1.189218499 1.25470916 0.74418467 1.374263162 1.185782063 1.21116976 1.267298222 1.319716754 1 19.38900999 SHSESASPSALSSS(ph)PNNLSPTGWSQPK ddPTM_HeLa_A486_30min_R1 3 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALS(0.005)S(0.056)S(0.939)PNNLSPTGWSQPK;SHSESASPSALS(0.001)S(0.004)S(0.995)PNNLSPTGWSQPK;SHSESASPSALS(0.001)S(0.016)S(0.982)PNNLSPTGWSQPK ;; 238.36 7.52E-50 2188280000 1250770 1114910 791160 102475 1317660 1075050 1323540 1349440 1120080 872950 TRUE FALSE FALSE 1163097.482 1026560.471 1097518.34 238566.9788 1152386.796 942421.2613 992376.293 1042201.97 1217169.436 654357.638 1.777464515 1.568806432 1.677245402 0.364581943 1.761096271 1.440223521 1.516565614 1.592710025 1.860098157 1 19.31971983 SHSESASPSALSSSPNNLS(ph)PTGWSQPK ddPTM_HeLa_A485_30min_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALSSSPNNLS(1)PTGWSQPK 229.95 7.57E-39 262340000 71638 74427 84361 49895 125260 76133 111660 117360 95864 111020 TRUE FALSE FALSE 87573.62595 83130.59022 115569.6445 52620.63751 112788.6746 80119.20616 87802.92882 88577.27599 115103.0255 83344.75717 1.05073947 0.997430349 1.386645644 0.631361099 1.353278579 0.961298693 1.053490727 1.062781619 1.381046984 1 16.34680383 -7.610421848 24.99984085 1.200992514 1.06242715 0.053470819 0.215178072 63.65550382 18166.62025 0.133836108 0.050585286 2.45E-08 7.610421848 -0.138565364 SHSESASPSALSSSPNNLS(ph)PTGWSQPK ddPTM_HeLa_A486_30min_R1 2 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALSSS(0.001)PNNLS(0.935)PT(0.061)GWS(0.002)QPK;SHSESASPSALSSSPNNLS(0.99)PT(0.01)GWSQPK ; 161.05 9.25E-14 269070000 165405 181706 177219 47587 305930 163584 187203 194560 162794 166008 TRUE FALSE FALSE 153810.9637 167306.9548 245842.9429 110784.9409 267557.4067 143402.6693 140362.8294 150262.9352 176905.115 124438.5163 1.236039839 1.344494935 1.975617761 0.890278543 2.150117301 1.152397775 1.127969326 1.207527538 1.421626682 1 16.92507357 SHSGS(ph)S(ph)SPS(ph)PSR ddPTM_HeLa_A485_30min_R1 1 SHSGSSSPSPSR 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 SHS(0.299)GS(0.67)S(0.714)S(0.317)PS(0.944)PS(0.055)R 126.32 3.24E-05 65109000 115720 122410 80535 157590 100670 104330 127710 119660 113400 150310 TRUE FALSE FALSE 141461.5148 136724.7847 110328.2478 166198.7427 90646.94133 109792.5575 100423.7152 90313.19738 136158.3398 112840.4833 1.253641519 1.211664296 0.9777364 1.472864506 0.803319329 0.972989075 0.889961761 0.800361668 1.206644423 1 16.78392522 -5.779597137 24.99999246 0.93415707 1.209794457 0.440475828 0.155579129 226.0647904 311249.5411 0.046336009 0.052639852 1.66E-06 5.779597137 0.275637386 SHSGT(ph)S(ph)PDNTAPPPPPPRPQPS(ph)HSR ddPTM_HeLa_A486_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 3 0 S(0.449)HS(0.487)GT(0.532)S(0.532)PDNTAPPPPPPRPQPS(0.559)HS(0.441)R 74.282 0.0058738 359980000 100660 138620 184510 28331 198250 91764 95810 112340 101190 62988 TRUE FALSE FALSE 93604.25381 127635.2464 255957.2133 65955.99977 173383.6364 80443.09067 71837.32463 86762.63436 109961.2307 47215.39482 1.982494357 2.703254878 5.421054178 1.396917256 3.672184402 1.703747072 1.521480968 1.837592054 2.328927484 1 15.52696971 -6.278965377 23.78448148 1.720894475 3.058274487 0.295474837 1.046237758 590.2913 801079.32 0.363836278 0.321733219 5.26E-07 6.278965377 1.337380012 SHSGT(ph)SPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_A485_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.005)HS(0.098)GT(0.488)S(0.408)PDNTAPPPPPPRPQPSHSR 123.24 9.57E-06 1928700000 42252 66279 57698 47678 69951 54524 69679 64960 54297 78879 TRUE FALSE FALSE 51650.81163 74029.7525 79042.89121 50282.52841 62986.43283 57378.79233 54791.51242 49028.45815 65193.90986 59215.91696 0.872245408 1.250166447 1.334825082 0.849138728 1.063674027 0.968975831 0.925283526 0.827960803 1.100952467 1 15.8536974 -5.272684619 24.93686538 0.9580771 1.162187735 0.289917552 0.135986811 807.9340014 1791631.22 0.037895607 0.056783202 5.34E-06 5.272684619 0.204110635 SHSGTS(ph)PDNTAPPPPPPRPQPS(ph)HSR ddPTM_HeLa_A485_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 S(0.205)HS(0.232)GT(0.258)S(0.305)PDNT(0.014)APPPPPPRPQPS(0.544)HS(0.443)R 66.461 0.033673 1438700000 102840 126260 149520 99643 207680 137020 167300 186020 145050 195380 TRUE FALSE FALSE 125716.4032 141025.0087 204833.67 105086.2448 187002.65 144194.1553 131554.9883 140398.3033 174160.2045 146675.3617 0.857106482 0.96147715 1.396510414 0.716454649 1.274942484 0.983083687 0.896912656 0.957204412 1.187385547 1 17.16226702 -4.524511383 24.99591992 1.047468882 0.883199028 0.098023694 0.184557781 103.4249243 1583485.24 0.044827215 0.120545133 2.99E-05 4.524511383 -0.164269853 SHSLS(ph)RPGPTEGDAEGEAEGPVGSTLGSYATLTR ddPTM_HeLa_A486_30min_R1 2 SHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTR 34 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 S(0.002)HS(0.162)LS(0.829)RPGPT(0.007)EGDAEGEAEGPVGSTLGSYATLTR;S(0.023)HS(0.112)LS(0.673)RPGPT(0.192)EGDAEGEAEGPVGSTLGSYATLTR ; 183.02 3.42E-21 899990000 145903 132119 116950 27647.8 169432 135763 151965 169450 122875 133285 TRUE FALSE FALSE 135675.9531 121649.4093 162236.172 64365.47564 148180.2587 119013.9414 113941.7497 130869.9341 133525.9039 99909.56846 1.357987581 1.217595183 1.623830175 0.64423735 1.483143816 1.19121665 1.140448822 1.309883889 1.336467628 1 16.60833523 SHSPSAS(ph)QSGSQLR ddPTM_HeLa_A486_30min_R1 1 SHSPSASQSGSQLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.004)HS(0.351)PS(0.13)AS(0.443)QS(0.068)GS(0.004)QLR 114.69 0.00019036 143190000 56010 53725 46144 2653.2 57854 42497 57759 51132 46480 31966 TRUE FALSE FALSE 52083.98824 49467.63534 64012.19258 6176.783685 50597.41185 37254.15222 43307.08729 39490.3598 50508.92382 23961.50554 2.173652576 2.064462738 2.671459541 0.257779449 2.111612385 1.554750062 1.807360861 1.648075065 2.107919461 1 14.54843094 SHSS(ph)LPPNNSYADFER ddPTM_HeLa_A485_30min_R1 2 SHSSLPPNNSYADFER 16 0 O43293 O43293 DAPK3 Death-associated protein kinase 3 1 0 S(0.033)HS(0.209)S(0.757)LPPNNSYADFER;S(0.116)HS(0.398)S(0.486)LPPNNSYADFER ; 104.29 0.00020539 833140000 175238 240310 209860 251286 328090 250690 346320 352980 224990 395160 TRUE FALSE FALSE 214219.0885 268412.1641 287495.947 265013.1179 295424.2076 263815.7408 272325.9028 266411.1015 270143.4293 296653.8844 0.722117929 0.904799088 0.969129218 0.893341135 0.995854844 0.889304859 0.917992034 0.898053643 0.910635065 1 18.17842115 -4.270619219 3.967716535 0.929648871 0.704874341 0.721497457 0.039211227 0.113550614 3.726645643 0.00934355 0.072728831 5.36E-05 4.270619219 -0.224774529 SHSS(ph)LPPNNSYADFER ddPTM_HeLa_A486_30min_R1 1 SHSSLPPNNSYADFER 16 0 O43293 O43293 DAPK3 Death-associated protein kinase 3 1 0 S(0.01)HS(0.124)S(0.866)LPPNNSYADFER 156.08 1.49E-08 346280000 232900 275450 226970 61460 349060 259750 332750 323000 221900 250410 TRUE FALSE FALSE 216574.9127 253622.3388 314858.8625 143081.986 305277.6399 227704.6859 249492.4305 249459.951 241134.4707 187705.7061 1.153800368 1.351170106 1.677406985 0.762267642 1.626363131 1.213094107 1.329168067 1.328995033 1.284641131 1 17.51811298 -8.178057627 5.948133462 1.000000223 1.30944086 0.126676135 0.239010121 11.89213342 396.9781809 0.215765572 0.056003395 6.64E-09 8.178057627 0.309440637 SHSS(ph)PSQIPK ddPTM_HeLa_A485_30min_R1 2 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.005)HS(0.296)S(0.699)PSQIPK;SHS(0.191)S(0.739)PS(0.07)QIPK ; 158.01 9.10E-07 1449550000 2458150 2526970 1929630 2922090 3223200 2790180 3879600 3956800 2374320 4221400 TRUE FALSE FALSE 3004956.987 2822477.16 2643480.436 3081716.378 2902286.891 2936269.51 3050691.767 2986388.596 2850824.245 3169082.669 0.94821035 0.890629073 0.834146885 0.972431678 0.915812932 0.926536104 0.962641901 0.942351118 0.89957396 1 21.59563386 -5.28126443 24.99972165 0.941891046 0.890958787 0.306589145 0.037352663 1011.706368 1275775.534 0.01036942 0.015401888 5.23E-06 5.28126443 -0.050932259 SHSS(ph)PSQIPK ddPTM_HeLa_A486_30min_R1 2 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.027)HS(0.194)S(0.779)PSQIPK;S(0.044)HS(0.248)S(0.57)PS(0.138)QIPK ; 124.89 8.53E-05 4740600000 4562500 4493500 2772200 1508100 4567900 5100500 6040100 5687900 3795600 5571000 TRUE FALSE FALSE 4242692.311 4137418.695 3845670.082 3510933.015 3994951.388 4471252.168 4528803.094 4392889.336 4124605.664 4175985.339 1.015973948 0.99076466 0.920901241 0.840743616 0.956648806 1.070705907 1.084487307 1.051940795 0.987696395 1 21.99368522 -6.181129614 5.762999035 1.044851317 0.939253613 0.454462721 0.051269746 0.215345773 12.00570916 0.018657948 0.018628495 6.59E-07 6.181129614 -0.105597703 SHSSPS(ph)QIPK ddPTM_HeLa_A485_30min_R1 1 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.001)HS(0.079)S(0.396)PS(0.524)QIPK 106.04 0.00093884 460940000 487420 499980 388690 620020 680290 543500 825120 825130 493390 912930 TRUE FALSE FALSE 595844.8974 558448.3118 532482.6057 653890.1226 612557.939 571956.8196 648826.3714 622765.5737 592408.8474 685353.3522 0.869398093 0.814832684 0.776946088 0.954091959 0.893784114 0.834542966 0.946703433 0.908678088 0.864384548 1 19.38648847 -13.99999977 0.045378699 1.545629778 0.582652855 0.416840065 0.049630964 661.954683 2.227334936 45.95023156 11.75680631 1.00E-14 13.99999977 -0.962976924 SHT(ph)SEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A485_30min_R1 2 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.132)HT(0.698)S(0.17)EGAHLDITPNSGAAGNSAGPK;S(0.001)HT(0.98)S(0.019)EGAHLDITPNSGAAGNSAGPK ; 307.82 2.48E-91 7106900000 845410 1017350 783260 451080 1412650 1014300 1714970 1786050 1207960 1223630 TRUE FALSE FALSE 1033468.538 1136320.233 1073020.468 475721.3582 1272001.606 1067407.18 1348552.649 1348018.437 1450386.492 918601.5602 1.125045485 1.237010998 1.168102162 0.517875626 1.384715268 1.161991472 1.468049596 1.467468046 1.578907063 1 19.80907971 SHT(ph)SEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A486_30min_R1 1 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 S(0.14)HT(0.842)S(0.018)EGAHLDITPNSGAAGNSAGPK 254.09 2.73E-61 2407400000 853620 969410 600180 54724 916660 800510 864920 909240 764930 349770 TRUE FALSE FALSE 793785.6461 892590.4211 832585.7694 127400.2376 801683.9553 701751.2152 648507.8678 702225.9006 831234.7483 262185.3154 3.027574771 3.404425682 3.175562171 0.485916755 3.057699681 2.676546603 2.473471357 2.678357099 3.170409247 1 18.00022736 -10.66952636 2.862384582 0.812132658 2.658878515 0.293147499 0.783344864 73131937.4 67424353.64 100187161.3 0.197772374 2.14E-11 10.66952636 1.846745856 SHTPS(ph)PTSPK ddPTM_HeLa_A485_30min_R1 4 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHTPS(0.996)PT(0.003)SPK;S(0.001)HT(0.029)PS(0.954)PT(0.006)S(0.009)PK;SHTPS(0.972)PT(0.025)S(0.003)PK;SHT(0.001)PS(0.992)PT(0.008)SPK ;;; 94.122 0.0019101 1767090000 2005050 2033790 1597330 2300010 2601260 2179540 3068480 3041030 1820670 3188930 TRUE FALSE FALSE 2451066.455 2271624.049 2188248.837 2425653.722 2342269.421 2293657.344 2412874.181 2295212.624 2186061.769 2393988.439 1.023842227 0.948886808 0.914059902 1.013226999 0.978396296 0.958090401 1.007888819 0.958740062 0.913146335 1 21.19098475 -4.250321881 23.57066355 0.965865917 1.023842304 0.212981021 0.033457267 1214.285935 2574348.086 0.008388517 0.116828394 5.62E-05 4.250321881 0.057976386 SHTPS(ph)PTSPK ddPTM_HeLa_A486_30min_R1 3 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHTPS(1)PTSPK;SHT(0.005)PS(0.965)PT(0.026)S(0.004)PK;SHTPS(1)PTSPK ;; 117.09 0.00040925 920495000 787960 727940 442010 323180 756050 782380 963920 922750 588010 927780 TRUE FALSE FALSE 732728.073 670255.3833 613168.1094 752379.3726 661219.1591 685857.9103 722737.0207 712659.9685 638979.1802 695457.8492 1.053590917 0.963761332 0.881675446 1.081847553 0.950768131 0.986196232 1.039224766 1.024734956 0.918789228 1 19.40760355 -5.264290297 24.9915585 1.000233607 0.966084447 0.068365911 0.057311646 766.542861 6719625.515 0.015830487 0.024884623 5.44E-06 5.264290297 -0.03414916 SHTPSPT(ph)SPK ddPTM_HeLa_A485_30min_R1 1 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHT(0.003)PS(0.071)PT(0.813)S(0.114)PK 147.26 2.29E-05 263990000 783240 718130 483760 1183500 927180 737320 1228800 1128600 627260 1625400 TRUE FALSE FALSE 957469.0359 802109.0566 662722.9549 1248151.608 834866.7037 775924.9351 966256.8416 851809.0804 753145.3284 1220217.693 0.784670671 0.657349144 0.543118624 1.022892567 0.684194884 0.635890579 0.791872505 0.698079601 0.617222101 1 20.21870712 -10.13632712 4.47926157 1.000037301 0.71586088 0.319728659 0.124694943 167488693.2 4.659276254 66423.27013 0.029858675 7.31E-11 10.13632712 -0.28417642 SHTPSPTS(ph)PK ddPTM_HeLa_A485_30min_R1 4 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHTPSPT(0.016)S(0.984)PK;SHTPSPT(0.003)S(0.997)PK;SHTPSPT(0.008)S(0.992)PK;SHTPSPT(0.003)S(0.997)PK ;;; 137.39 2.45E-05 8269550000 11306150 10252550 7173557 17875120 14415850 10951580 18819190 17177490 9076660 25212460 TRUE FALSE FALSE 13821164.06 11451496.54 9827354.251 18851592.54 12980557.36 11524987.79 14798316.32 12964683.64 10898262.41 18927457.72 0.730217669 0.60502032 0.519211528 0.995991792 0.685805645 0.608903106 0.781843845 0.684966985 0.575791137 1 24.17397731 -10.36232839 3.095959992 1.003273587 0.689558803 0.354818081 0.126380139 44932670.04 57169924.68 1331604.292 0.032344243 4.34E-11 10.36232839 -0.313714785 SHTPSPTS(ph)PK ddPTM_HeLa_A486_30min_R1 7 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHTPSPT(0.044)S(0.956)PK;SHTPS(0.001)PT(0.007)S(0.992)PK;SHT(0.001)PS(0.02)PT(0.147)S(0.832)PK;SHTPSPT(0.022)S(0.978)PK;SHTPSPT(0.014)S(0.986)PK;SHTPS(0.005)PT(0.455)S(0.54)PK;SHTPSPTS(1)PK ;;;;;; 131.36 5.39E-05 10830250000 13384100 12153080 5672980 6699780 11285270 14768640 18478610 17925940 9274180 22709450 TRUE FALSE FALSE 12445943.71 11190025.68 7869709.784 15597426.43 9869766.206 12946635.35 13855066.33 13844594.78 10078073.39 17022855.91 0.731131355 0.657353017 0.462302555 0.916263788 0.579794969 0.76054426 0.813909629 0.813294482 0.59203188 1 24.02096976 -14 0.163171448 2.089152451 0.630674814 0.324121753 0.1276198 155.0772182 1.436933308 54.85105648 0.503979689 1.00E-14 14 -1.458477637 SHVCWHVYGLLQR ddPTM_HeLa_A485_30min_R1 1 SHVCWHVYGLLQR 13 0 A0A0B4J1W3;Q9BXJ9;Q6N069-5;Q6N069-4;Q6N069-3;Q9BXJ9-4;Q6N069-2;Q6N069 A0A0B4J1W3 NAA15;NAA16 "N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit" 0 0 62.528 0.031631 27743000 22047 34540 40392 12046 31859 37339 23140 30312 36604 26593 FALSE FALSE TRUE 26951.27909 38579.15254 55334.68165 12704.04248 28687.0061 39294.0123 18195.94996 22877.93447 43950.08705 19963.85451 1.350003782 1.932450095 2.771743384 0.636352187 1.436947263 1.968257797 0.911444729 1.145967802 2.201483037 1 14.28510267 -5.264078707 24.98709462 1.34849903 2.009504155 0.248967627 0.54790812 342.8116846 3245482.445 0.152788396 0.238781372 5.44E-06 5.264078707 0.661005125 SHVCWHVYGLLQR ddPTM_HeLa_A486_30min_R1 1 SHVCWHVYGLLQR 13 0 A0A0B4J1W3;Q9BXJ9;Q6N069-5;Q6N069-4;Q6N069-3;Q9BXJ9-4;Q6N069-2;Q6N069 A0A0B4J1W3 NAA15;NAA16 "N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit" 0 0 97.594 0.0023691 16193000 19944 21792 28699 6951.9 27728 18296 16334 17627 17312 16988 FALSE FALSE TRUE 18546.02859 20065.12255 39812.02139 16184.37453 24250.09569 16038.82554 12247.06044 13613.71689 18812.6181 12734.09423 1.456407363 1.575700807 3.126411716 1.270948231 1.90434398 1.259518365 0.961753558 1.069076187 1.477342461 1 13.63640872 -6.21758597 1.841818 1.119689443 1.932701553 0.3433971 0.489653055 0.409445251 2.738456762 0.201715009 0.190319771 6.06E-07 6.21758597 0.81301211 SHVEDGDIAGAPAS(ph)SPEAPPAEQDPVQLK ddPTM_HeLa_A485_30min_R1 1 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;A0A087WU26;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 SHVEDGDIAGAPAS(0.529)S(0.471)PEAPPAEQDPVQLK 106.49 0.00020089 375100000 69519 91064 91790 94504 112510 106950 135430 138840 88700 169910 TRUE FALSE FALSE 84983.26171 101713.1426 125746.9407 99666.51422 101308.1094 112549.7366 106494.2741 104789.2723 106501.2764 127554.564 0.666250262 0.797408885 0.985828627 0.781363764 0.794233512 0.882365422 0.834891915 0.821525072 0.834946811 1 16.96075499 -14 0.191317796 1.734450781 0.795982895 0.353728084 0.074806607 171.9485685 1.684472001 48.31359119 0.20816615 1.00E-14 14 -0.938467886 SHVEDGDIAGAPAS(ph)SPEAPPAEQDPVQLK ddPTM_HeLa_A486_30min_R1 3 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;A0A087WU26;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 SHVEDGDIAGAPAS(0.531)S(0.469)PEAPPAEQDPVQLK;SHVEDGDIAGAPAS(0.58)S(0.42)PEAPPAEQDPVQLK;SHVEDGDIAGAPAS(0.559)S(0.441)PEAPPAEQDPVQLK ;; 213.41 1.50E-29 1456140000 746770 663340 470920 237345 714760 699810 807640 769720 640980 942110 TRUE FALSE FALSE 694425.2793 610774.5226 653272.8357 552551.1548 625108.1359 613474.5573 605559.9297 594471.5589 696540.6625 706199.5239 0.983327312 0.864875296 0.9250542 0.782429237 0.885172129 0.868698628 0.857491274 0.841789804 0.986322759 1 19.42971632 -7.774009943 23.22957628 0.99316178 0.873674488 0.470741639 0.049594111 90.8434395 167859.8378 0.045176538 0.012056047 1.68E-08 7.774009943 -0.119487293 SHVEDGDIAGAPASS(ph)PEAPPAEQDPVQLK ddPTM_HeLa_A485_30min_R1 2 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 Q9P2E9;A0A087WVV2;Q9P2E9-3;A0A087WU26;F8W7S5 Q9P2E9 RRBP1 Ribosome-binding protein 1 1 0 SHVEDGDIAGAPAS(0.173)S(0.827)PEAPPAEQDPVQLK;SHVEDGDIAGAPAS(0.178)S(0.822)PEAPPAEQDPVQLK ; 228.53 5.65E-39 1343440000 481960 530180 396190 518040 565420 560520 684670 796270 489460 852630 TRUE FALSE FALSE 589170.3393 592179.939 542757.1678 546339.2135 509124.7995 589867.9605 538384.6613 600983.534 587690.1324 640085.0325 0.92045636 0.925158235 0.847945414 0.853541617 0.79540182 0.921546249 0.84111428 0.938912025 0.918143844 1 19.28790405 -7.932053329 1.077285148 0.99707083 0.871220855 0.457399326 0.04198871 0.465843445 1.213781353 0.041018661 0.01348173 1.17E-08 7.932053329 -0.125849975 SHVSSEPYEPIS(ph)PPQVPVVHEK ddPTM_HeLa_A485_30min_R1 4 SHVSSEPYEPISPPQVPVVHEK 22 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK ;;; 217.21 5.87E-36 2363410000 979530 1793140 1608080 533755 2395360 1318890 1816470 1823700 1516370 1149630 TRUE FALSE FALSE 1197423.069 2002832.125 2202975.71 562912.6841 2156869.548 1387945.041 1428366.345 1376434.716 1820691.55 863048.3984 1.387434438 2.320648678 2.552551762 0.652237679 2.499129309 1.608189116 1.655024617 1.594852291 2.109605387 1 19.71908194 -11.23089249 0.358450282 1.04E-14 1.861620817 0.160617698 0.550548296 90.17867663 4.373928158 73.96166579 0.407123732 5.88E-12 11.23089249 1.861620817 SHVSSEPYEPIS(ph)PPQVPVVHEK ddPTM_HeLa_A486_30min_R1 2 SHVSSEPYEPISPPQVPVVHEK 22 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK ; 198.68 6.62E-27 1674470000 1203270 1176930 992450 75978 1494480 854710 1037840 983510 1104690 410190 TRUE FALSE FALSE 1118926.987 1083665.78 1376753.219 176880.6237 1307028.383 749264.5703 778161.4548 759586.2429 1200445.419 307475.7541 3.639073884 3.524394252 4.477599291 0.575266899 4.250833978 2.436824889 2.530805907 2.47039395 3.90419538 1 18.23011313 -9.879155289 0.18679986 1.28E-31 3.657761551 0.230605085 1.102709903 31.78011195 1.374529289 26.65903474 4.063286689 1.32E-10 9.879155289 3.657761551 SHVTEEEEEEEEEES(ph)DS ddPTM_HeLa_A485_30min_R1 2 SHVTEEEEEEEEEESDS 17 0 O75971-2;O75971 O75971-2 SNAPC5 snRNA-activating protein complex subunit 5 1 0 SHVTEEEEEEEEEES(0.909)DS(0.091);SHVTEEEEEEEEEES(1)DS ; 387.87 1.83E-135 1435920000 574660 832020 776290 631070 1058910 771400 1044240 1079440 783700 900300 TRUE FALSE FALSE 702491.1344 929317.5014 1063471.975 665543.7561 953481.2023 811789.3112 821129.5933 814705.6475 940981.4015 675871.7788 1.039385215 1.374990835 1.573481847 0.984718962 1.410742736 1.201099582 1.214919189 1.205414508 1.392248398 1 19.36639005 -10.85998701 2.584450848 0.883009726 1.269305044 0.183158494 0.168628847 18918867.69 11426212.98 13603746.11 0.041185526 1.38E-11 10.85998701 0.386295318 SHVTEEEEEEEEEES(ph)DS ddPTM_HeLa_A486_30min_R1 2 SHVTEEEEEEEEEESDS 17 0 O75971-2;O75971 O75971-2 SNAPC5 snRNA-activating protein complex subunit 5 1 0 SHVTEEEEEEEEEES(0.5)DS(0.5);SHVTEEEEEEEEEES(0.5)DS(0.5) ; 411.31 2.14E-153 1121020000 710390 730300 591430 167682 812790 693250 740650 798120 635120 689890 TRUE FALSE FALSE 660595.3295 672428.3683 820447.535 390372.1702 710842.2992 607723.8634 555331.5362 616405.4988 690172.713 517137.0536 1.277408619 1.300290443 1.586518563 0.754871784 1.374572358 1.17516983 1.073857563 1.191957711 1.334603096 1 18.98018715 -5.223576136 24.9994041 1.147110217 1.379294222 0.29506953 0.181690411 775.2586534 511867.7402 0.047542568 0.082343797 5.98E-06 5.223576136 0.232184005 SHWDDSTS(ph)DS(ph)ELEK ddPTM_HeLa_A485_30min_R1 1 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 0 SHWDDS(0.24)T(0.549)S(0.692)DS(0.519)ELEK 204.82 1.45E-22 0 131050 129910 94438 200300 167670 135490 213800 190590 116470 255990 TRUE FALSE FALSE 160201.6204 145101.8444 129374.5461 211241.8818 150976.1861 142584.0469 168119.8834 143847.5037 139844.4607 192176.4041 0.833617535 0.755045059 0.673207237 1.099208213 0.785612504 0.741943568 0.874820632 0.748518031 0.727687987 1 17.55207168 -11.35564042 2.277278663 2.253820882 0.805804048 0.21499762 0.112094133 10682629.31 1072273.866 69245736.18 0.02820646 4.41E-12 11.35564042 -1.448016834 SHWDDSTS(ph)DSELEK ddPTM_HeLa_A485_30min_R1 1 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SHWDDS(0.003)T(0.157)S(0.84)DSELEK 166.62 4.06E-12 210510000 215380 224980 150680 321170 261180 237590 367940 330990 197310 432060 TRUE FALSE FALSE 263290.5379 251289.4539 206422.8023 338714.7039 235176.0021 250029.845 289326.6132 249814.1835 236908.3072 324355.3935 0.811734731 0.774734933 0.636409341 1.044270299 0.725056549 0.770851511 0.89200494 0.770186618 0.730397311 1 18.3072159 -10.88440343 2.372734064 1.108170416 0.796483906 0.259736228 0.103764019 14615967.51 7761624.12 8863836.988 0.026655303 1.30E-11 10.88440343 -0.31168651 SHWDDSTS(ph)DSELEK ddPTM_HeLa_A486_30min_R1 2 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SHWDDST(0.006)S(0.994)DSELEK;SHWDDST(0.014)S(0.986)DSELEK ; 268.93 1.44E-42 747500000 1065380 908130 457550 410680 881050 1044260 1229500 1217780 727630 1560660 TRUE FALSE FALSE 990702.3636 836166.4714 634725.6136 956083.7946 770540.4935 915429.8185 921866.0957 940518.078 790701.5543 1169860.578 0.846855072 0.714757371 0.542565179 0.817263025 0.658660107 0.782511896 0.788013643 0.803957408 0.675893837 1 20.15790517 -13.99999999 0.271460042 2.834646061 0.716679143 0.442467741 0.087785722 196.9162 1.91234592 202.576227 0.10700317 1.00E-14 13.99999999 -2.117966918 SIATLAITTLLK ddPTM_HeLa_A485_30min_R1 1 SIATLAITTLLK 12 0 Q9UBF2-2;Q9UBF2;Q9Y678 Q9UBF2-2 COPG2;COPG1 Coatomer subunit gamma-2;Coatomer subunit gamma-1 0 0 112.13 0.0044402 0 2270.6 2473.5 1379.8 2449.4 2913.8 1836.4 2730.6 2191.5 2065.9 3206.8 FALSE FALSE TRUE 2775.687137 2762.754308 1890.245438 2583.20452 2623.691841 1932.551064 2147.185003 1654.031189 2480.50718 2407.403777 1.152979472 1.147607367 0.785180058 1.073025034 1.08984287 0.802753191 0.891908962 0.687060145 1.030366075 1 11.23326242 -6.258976112 24.99472953 0.863452137 1.041762051 0.279654955 0.132215689 285.6499 2898490.964 0.044635467 0.04266239 5.51E-07 6.258976112 0.178309913 SIATLAITTLLK ddPTM_HeLa_A486_30min_R1 1 SIATLAITTLLK 12 0 Q9UBF2-2;Q9UBF2;Q9Y678 Q9UBF2-2 COPG2;COPG1 Coatomer subunit gamma-2;Coatomer subunit gamma-1 0 0 91.549 0.0088799 0 2114.3 1958.2 1193.6 839.44 2184.2 1311.8 1845 1827.5 1913.7 2433.5 FALSE FALSE TRUE 1966.098488 1803.0251 1655.793886 1954.258743 1910.237269 1149.963453 1383.361486 1411.418144 2079.581057 1824.135761 1.07782465 0.988427035 0.907714174 1.071334045 1.047201261 0.630415498 0.758365422 0.773746217 1.14003634 1 10.83299739 SIDAVIATASAPPS(ph)SSPGR ddPTM_HeLa_A486_30min_R1 1 SIDAVIATASAPPSSSPGR 19 0 Q9NR48-2;Q9NR48 Q9NR48-2 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 SIDAVIATASAPPS(0.333)S(0.333)S(0.333)PGR 126.14 5.30E-06 134830000 60219 63203 58259 27094 73781 60314 71080 67654 60140 76448 TRUE FALSE FALSE 55997.95907 58194.5641 80818.44503 63076.20125 64526.699 52873.07191 53295.03219 52250.66108 65352.98362 57304.92321 0.977192812 1.015524685 1.410322892 1.100711732 1.126023654 0.922661945 0.930025366 0.91180056 1.14044274 1 15.80637147 -6.245730703 20.65168428 0.972288648 1.134216101 0.252856529 0.123741712 115.0191861 151210.4503 0.042518227 0.042264258 5.68E-07 6.245730703 0.161927454 SIFAS(ph)PESVTGK ddPTM_HeLa_A485_30min_R1 4 SIFASPESVTGK 12 0 O75940 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 1 0 SIFAS(0.998)PES(0.002)VTGK;SIFAS(0.985)PES(0.015)VTGK;SIFAS(0.998)PES(0.001)VTGK;SIFAS(0.999)PES(0.001)VTGK ;;; 192.65 2.14E-13 655890000 1847010 1835760 1477580 1992090 2713340 1940480 2555470 2772870 1718550 2766980 TRUE FALSE FALSE 2257871.002 2050436.163 2024198.329 2100912.832 2443190.342 2042080.532 2009472.958 2092819.285 2063447.222 2077222.808 1.086966209 0.987104587 0.974473379 1.011404662 1.176181165 0.983082086 0.967384409 1.007508331 0.993368267 1 20.98622454 SIFAS(ph)PESVTGK ddPTM_HeLa_A486_30min_R1 5 SIFASPESVTGK 12 0 O75940 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 1 0 SIFAS(0.994)PES(0.005)VTGK;SIFAS(1)PESVTGK;SIFAS(1)PESVTGK;SIFAS(0.997)PES(0.003)VTGK;SIFAS(0.995)PES(0.005)VTGK ;;;; 215.02 1.36E-18 699471000 2824439 2783668 1809764 1189064 3097964 2973389 3362889 3363771 2319001 3334269 TRUE FALSE FALSE 2626460.412 2563080.01 2510553.088 2768201.084 2709388.468 2606562.496 2521458.603 2597913.774 2520013.874 2499346.34 1.050858926 1.025500135 1.004483872 1.107570023 1.084038824 1.042897679 1.008847219 1.039437285 1.008269176 1 21.2531194 -6.616806034 5.252915572 1.017707886 1.053988625 0.30940583 0.028305709 0.32212353 14.32220515 0.012084167 0.009269404 2.42E-07 6.616806034 0.036280739 SIFDFSALKELLSGPNR ddPTM_HeLa_A485_30min_R1 1 SIFDFSALKELLSGPNR 17 1 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 0 195.27 2.02E-18 9347100 3721.8 7893.3 4540.6 2931.1 9698.5 9257.5 12489 30064 5108.7 4731.5 FALSE FALSE TRUE 4549.70157 8816.352772 6220.35689 3091.218571 8732.883287 9742.208385 9820.623124 22690.75686 6133.96923 3552.024127 1.280875751 2.482064439 1.751214707 0.870269587 2.458565307 2.742720217 2.764796289 6.38812014 1.726894022 1 11.79442567 -6.31142327 1.892793019 3.377023602 1.690201464 0.134367439 1.397566078 0.531858101 3.751830374 0.56844648 0.502500582 4.88E-07 6.31142327 -1.686822139 SIFDFSALKELLSGPNR ddPTM_HeLa_A486_30min_R1 1 SIFDFSALKELLSGPNR 17 1 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 0 147.64 7.28E-09 3410600 6857 5755 4441.1 4038.1 9779.5 5131.3 7691 7682 3501.6 6450.4 FALSE FALSE TRUE 6376.35971 5298.952841 6160.812857 9400.900874 8552.86392 4498.252377 5766.630453 5932.976297 3805.121507 4835.177855 1.318743571 1.095916841 1.274164683 1.944271991 1.768883002 0.930317873 1.192640814 1.227044066 0.786966193 1 12.23935324 -6.276713241 24.95864533 1.05191197 1.473349666 0.438301152 0.255596016 943.1760635 1541216.585 0.100806304 0.089231474 5.29E-07 6.276713241 0.421437695 SIFGEDALANVSIEK(ac)PIHQGPDAAVTGHIR ddPTM_HeLa_A486_30min_R1 1 SIFGEDALANVSIEKPIHQGPDAAVTGHIR 30 1 P53618 P53618 COPB1 Coatomer subunit beta 0 1 SIFGEDALANVSIEK(1)PIHQGPDAAVTGHIR 62.052 0.0045624 15871000 4207.5 8506.2 8942 2290.2 14030 7601.2 9339.4 10867 7310.1 8004.9 FALSE TRUE FALSE 3912.575978 7832.137733 12404.58188 5331.70134 12270.22658 6663.441227 7002.583338 8392.821325 7943.745354 6000.420937 0.652050251 1.305264716 2.06728528 0.888554552 2.044894301 1.11049563 1.16701535 1.398705426 1.323864682 1 12.550848 SIFGEDALANVSIEKPIHQGPDAAVTGHIR ddPTM_HeLa_A485_30min_R1 1 SIFGEDALANVSIEKPIHQGPDAAVTGHIR 30 1 P53618 P53618 COPB1 Coatomer subunit beta 0 0 83.559 4.64E-05 8273400 7066.9 8997.8 11282 7310.2 13135 9546.5 10290 11053 9661.4 11249 FALSE FALSE TRUE 8638.907524 10050.01444 15455.68128 7709.537716 11827.23328 10046.33998 8091.457438 8342.23442 11600.35436 8444.831323 1.022981655 1.190078766 1.830194197 0.912929746 1.40052925 1.189643652 0.95815501 0.987850923 1.373663241 1 13.04385289 -6.526858532 23.26931007 1.078189711 1.279675832 0.112120041 0.253394141 110.0957632 643687.5468 0.095475942 0.074371566 2.97E-07 6.526858532 0.201486122 SIFS(ph)SEK ddPTM_HeLa_A485_30min_R1 2 SIFSSEK 7 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SIFS(0.989)S(0.01)EK;SIFS(0.994)S(0.005)EK ; 92.445 0.0062665 192264000 284940 247680 198247 340290 369910 253280 358770 357710 217231 438120 TRUE FALSE FALSE 348323.92 276644.0215 271586.815 358879.181 333080.4616 266541.3492 282115.8586 269981.0616 260827.2691 328904.747 1.059041936 0.841106807 0.825730907 1.091134088 1.012695817 0.810390703 0.857743347 0.820848784 0.793017649 1 18.3273103 -6.267604949 24.74378794 0.845287097 0.958172248 0.242753563 0.095241652 663.430688 2662485.983 0.034071483 0.030828985 5.40E-07 6.267604949 0.112885151 SIFS(ph)SEK ddPTM_HeLa_A486_30min_R1 3 SIFSSEK 7 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SIFS(0.999)S(0.001)EK;SIFS(0.99)S(0.01)EK;SIFS(0.992)S(0.008)EK ;; 145.46 0.0012356 389903000 738025 705243 406201 389435 744546 821304 978290 884452 564176 1115810 TRUE FALSE FALSE 686293.2587 649356.9762 563492.9056 906624.361 651158.0981 719979.8629 733511.4947 683081.5871 613079.2299 836403.9133 0.820528512 0.776367693 0.673709074 1.083955188 0.778521104 0.860804034 0.87698238 0.816688655 0.732994215 1 19.67384029 -11.41947174 2.24041765 2.503559426 0.827314141 0.205211476 0.103479057 3842730.21 410934.2882 29644444.2 0.025448253 3.81E-12 11.41947174 -1.676245285 SIGAAS(ph)PRPQSLEK ddPTM_HeLa_A486_30min_R1 2 SIGAASPRPQSLEK 14 1 Q96L73-2;Q96L73-3;Q96L73 Q96L73-2 NSD1 "Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific" 1 0 SIGAAS(1)PRPQSLEK;SIGAAS(0.999)PRPQSLEK ; 121.27 3.14E-05 387890000 452360 444060 303350 181604 494120 463560 559720 546470 401900 607330 TRUE FALSE FALSE 420651.9 408871.0684 420815.244 422783.2898 432142.8621 406370.6803 419672.1359 422050.7104 436737.0156 455250.6149 0.924000729 0.898123045 0.924359529 0.928682523 0.949241688 0.892630712 0.921848586 0.927073345 0.95933317 1 18.79630144 -7.989999414 1.942715721 0.999815306 0.919627306 0.744609313 0.014840664 0.169163019 1.459485729 0.014479669 0.004083135 1.02E-08 7.989999414 -0.080188 SIGS(ph)PESTPK ddPTM_HeLa_A485_30min_R1 2 SIGSPESTPK 10 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 SIGS(0.997)PES(0.002)TPK;SIGS(0.998)PES(0.001)TPK ; 145.14 5.43E-06 1686940000 3902800 3995300 2963700 4955600 4556800 4657900 6601000 6496200 3509500 7054100 TRUE FALSE FALSE 4770964.395 4462515.581 4060095.96 5226311.88 4103108.992 4901780.442 5190642.425 4902996.764 4213824.459 5295642.691 0.90092264 0.842676865 0.76668616 0.986907951 0.774808504 0.925625222 0.980172328 0.925854906 0.795715403 1 22.33637435 SIGS(ph)PESTPK ddPTM_HeLa_A486_30min_R1 2 SIGSPESTPK 10 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 SIGS(1)PESTPK;S(0.001)IGS(0.999)PESTPK ; 134.75 5.11E-05 1668090000 4014800 3868100 2156230 1672250 3851000 4254300 5001000 4996500 3320700 5931100 TRUE FALSE FALSE 3733383.252 3561577.669 2991180.002 3893082.511 3367971.671 3729447.721 3749696.905 3858906.023 3608540.95 4445913.955 0.839733582 0.801090103 0.672793048 0.875654039 0.757543152 0.83884838 0.843402941 0.867966871 0.811653349 1 22.0840486 -10.84901902 0.216290296 1.211056542 0.769769911 0.539859632 0.054227606 22.24110746 0.756911488 2.524942742 0.121603633 1.42E-11 10.84901902 -0.441286631 SIGVSNFNHR ddPTM_HeLa_A485_30min_R1 4 SIGVSNFNHR 10 0 P52895;B4DK69;S4R3P0 P52895 AKR1C2 Aldo-keto reductase family 1 member C2 0 0 ;;; ;;; 173.64 3.96E-07 1291180000 976783 1469920 1450580 747612 1603190 1350460 1708450 1809900 1196120 1332920 FALSE FALSE TRUE 1194065.008 1641814.357 1987209.906 788452.1505 1443570.774 1421167.997 1343425.701 1366019.187 1436170.313 1000647.575 1.193292263 1.640751848 1.985923872 0.787941899 1.44263656 1.420248281 1.342556295 1.36513516 1.435240887 1 19.93250252 -12.76499848 0.192154555 6.70E-11 1.48600073 0.146445275 0.287989331 163.0870894 2.453132445 65.19946241 0.807598516 1.72E-13 12.76499848 1.48600073 SIGVSNFNHR ddPTM_HeLa_A486_30min_R1 3 SIGVSNFNHR 10 0 P52895;B4DK69;S4R3P0 P52895 AKR1C2 Aldo-keto reductase family 1 member C2 0 0 ;; ;; 128.51 0.00032212 618361000 464487 513954 397425 79070 649314 430375 515920 483786 498158 483205 FALSE FALSE TRUE 431928.8599 473226.4133 551318.6034 184078.956 567870.9835 377279.7082 386831.3592 373638.4888 541338.7365 362207.3229 1.192490689 1.306507029 1.522107833 0.508214341 1.567806468 1.041612592 1.067983265 1.031559732 1.49455492 1 18.46645619 SIHSFMTHPEFAIEEELPRT(ph)PLLDEEEEENPDKASK ddPTM_HeLa_A485_30min_R1 3 SIHSFMTHPEFAIEEELPRTPLLDEEEEENPDKASK 36 2 P23634-7;P23634-6;P23634-8;P23634 P23634-7 ATP2B4 Plasma membrane calcium-transporting ATPase 4 1 0 S(0.001)IHS(0.001)FMT(0.001)HPEFAIEEELPRT(0.996)PLLDEEEEENPDKASK;S(0.001)IHS(0.001)FMT(0.001)HPEFAIEEELPRT(0.998)PLLDEEEEENPDKASK;S(0.036)IHS(0.036)FMT(0.036)HPEFAIEEELPRT(0.893)PLLDEEEEENPDKASK ;; 105.48 0.00012035 315991000 67977 63419 29544.8 71539 48618 82772 99770 109126 53843 146064 TRUE FALSE FALSE 83098.24913 70835.30038 40474.65098 75446.99442 43777.42121 87105.81393 78453.32445 82362.6774 64648.79622 109652.9329 0.757829699 0.645995492 0.369115991 0.688052681 0.399236209 0.79437742 0.715469458 0.751121518 0.589576535 1 16.74258488 -6.293017947 24.7703476 0.751139131 0.57132519 0.308623774 0.146855094 825.1312649 647233.3539 0.050123715 0.044209032 5.09E-07 6.293017947 -0.179813942 SIILHLISQLK ddPTM_HeLa_A485_30min_R1 1 SIILHLISQLK 11 0 Q9BXB5;Q9BXB5-2;A0A5F9ZH75;H7C487 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10;Oxysterol-binding protein 0 0 122.51 0.011102 0 24922 23649 22061 19898 35150 19534 31143 28920 19225 36834 FALSE FALSE TRUE 30465.81292 26414.54483 30222.28193 20984.97736 31650.34258 20556.77003 24489.04364 21827.32466 23083.28116 27651.96168 1.101759552 0.955250305 1.092952547 0.758896515 1.144596646 0.743410911 0.885616866 0.789358994 0.834779153 1 14.75509421 -5.171681401 0.678518653 0.851774697 1.093223604 0.237211514 0.124298681 1.699137039 1.245470591 0.062947272 0.269303975 6.73E-06 5.171681401 0.241448906 SIITYVSSLYDAMPR ddPTM_HeLa_A485_30min_R1 2 SIITYVSSLYDAMPR 15 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 281.73 1.50E-52 34895000 25417 25808 27313 29417.3 34927 24026 36858 36404 23941 42233 FALSE FALSE TRUE 31070.92396 28826.0211 37417.21529 31024.29261 31449.54524 25283.96421 28982.9872 27475.86192 28745.7391 31705.09034 0.979997963 0.909192208 1.180164286 0.978527179 0.991939935 0.797473337 0.914143025 0.866607274 0.90666006 1 14.95242687 -6.085807197 7.791200972 0.889711856 1.012854409 0.328314126 0.079432361 0.335460264 27.29787592 0.025950679 0.026008841 8.21E-07 6.085807197 0.123142554 SIITYVSSLYDAMPR ddPTM_HeLa_A486_30min_R1 3 SIITYVSSLYDAMPR 15 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ;; ;; 276.35 3.47E-52 52979000 52051 56841 53053 19873.3 65780 53710 60724 61873 52756 57387 FALSE FALSE TRUE 48402.49369 52336.71215 73596.54241 46266.04674 57529.25903 47083.80628 45530.21293 47785.86858 57328.93256 43016.92167 1.125196593 1.216654054 1.710874222 1.075531324 1.337363456 1.094541507 1.058425642 1.110862115 1.332706533 1 15.39261667 -6.263324118 24.61816223 1.122430941 1.299995477 0.189268243 0.179531561 245.4075236 3205452.177 0.061986533 0.057510515 5.45E-07 6.263324118 0.177564536 SIITYVVTYYHYFSK ddPTM_HeLa_A485_30min_R1 2 SIITYVVTYYHYFSK 15 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 284.38 1.22E-53 176893000 267680 258250 251000 152875 344240 186191 293200 256410 192094 325940 FALSE FALSE TRUE 327224.4925 288450.091 343855.345 161226.1742 309966.2569 195939.6729 230555.4248 193525.0455 230645.5038 244689.1565 1.33730688 1.178842966 1.405274144 0.658901998 1.266775616 0.800769743 0.942238014 0.7909016 0.94260615 1 17.90059064 -5.247136165 24.99610487 0.916969341 1.294311511 0.559792185 0.159387208 585.9400062 1023979.507 0.040771827 0.070198238 5.66E-06 5.247136165 0.37734217 SIITYVVTYYHYFSK ddPTM_HeLa_A486_30min_R1 2 SIITYVVTYYHYFSK 15 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 272.97 1.09E-52 126832000 152229 130673 93692 95094 178284 127361 147319 143777 63762 120045 FALSE FALSE TRUE 141558.5332 120317.9956 129972.0516 221383.6378 155921.9583 111648.4947 110458.228 111042.1157 69288.9415 89984.95064 1.573135643 1.337090199 1.444375428 2.460229585 1.732755946 1.240746302 1.227518904 1.234007631 0.770005884 1 16.45739612 -6.391152235 3.225910184 1.088977649 1.715214159 0.505853702 0.307235272 0.254731356 4.986970832 0.127706638 0.109939404 4.06E-07 6.391152235 0.62623651 SIKPSDS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SIKPSDSPR 9 1 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 SIKPS(0.002)DS(0.998)PR;SIKPS(0.036)DS(0.964)PR;SIKPS(0.037)DS(0.963)PR ;; 90.697 0.001675 1364000000 3190110 3423400 2710140 3884200 3736200 3553620 4959100 4854600 3072090 5281400 TRUE FALSE FALSE 3899738.964 3823736.85 3712733.564 4096384.011 3364210.809 3739682.048 3899547.773 3664001.738 3688630.284 3964844.177 0.983579377 0.964410373 0.936413488 1.033176546 0.848510221 0.943210346 0.983531155 0.924122506 0.930334237 1 21.91883274 -5.723395218 24.99999985 0.936998979 0.975254399 0.171140816 0.043890738 324.8757951 213484.4968 0.012744933 0.016453284 1.89E-06 5.723395218 0.038255419 SIKPSDS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SIKPSDSPR 9 1 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 SIKPS(0.016)DS(0.984)PR;SIKPS(0.05)DS(0.949)PR ; 75.088 0.0055872 1453710000 3810700 3869100 2091230 1496910 3171100 3610300 4226400 4069000 2879400 4819400 TRUE FALSE FALSE 3543589.608 3562498.425 2901010.261 3484882.13 2773351.069 3164897.893 3168910.018 3142577.526 3128988.71 3612590.871 0.980899785 0.986133928 0.803027623 0.964648989 0.767690327 0.876074265 0.87718486 0.869895772 0.866134257 1 21.78460245 -4.737224691 24.97196378 0.872480806 0.983517014 0.301337062 0.06376254 243.5978571 251212.0143 0.014887633 0.039367587 1.83E-05 4.737224691 0.111036207 SIKRPS(ph)PAEK ddPTM_HeLa_A485_30min_R1 2 SIKRPSPAEK 10 2 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 S(0.011)IKRPS(0.989)PAEK;S(0.009)IKRPS(0.991)PAEK ; 87.447 0.0016299 1203870000 742760 1156760 479840 749930 1400530 1698170 2651700 4253500 745860 1167580 TRUE FALSE FALSE 907984.3995 1292033.02 657352.7838 790896.777 1261088.316 1787083.555 2085142.633 3210322.456 895547.2606 876523.7937 1.035892472 1.474042152 0.749954295 0.902310676 1.438738258 2.038830626 2.378877388 3.662561677 1.021703309 1 19.74143373 -6.1804896 2.593969331 2.231154454 1.056645661 0.266056401 0.732391156 0.325057506 4.285174721 0.26202099 0.25584415 6.60E-07 6.1804896 -1.174508793 SIKS(ph)DVPVYLK ddPTM_HeLa_A485_30min_R1 1 SIKSDVPVYLK 11 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.489)IKS(0.511)DVPVYLK 84.759 0.0019943 226290000 707510 476070 411660 1005400 716940 622860 988560 767830 615440 1536400 TRUE FALSE FALSE 864893.1586 531742.2452 563950.1646 1060322.456 645558.9363 655471.9865 777346.0802 579518.4886 738953.1628 1153403.755 0.749861577 0.46102004 0.488944276 0.919298599 0.559699007 0.568293612 0.67395834 0.502441999 0.640671716 1 20.13746619 -11.18083312 1.931107088 1.863317724 0.613712375 0.431565396 0.131346616 2949505.599 565754.0383 11118831.91 0.033926287 6.59E-12 11.18083312 -1.249605349 SIKS(ph)DVPVYLK ddPTM_HeLa_A486_30min_R1 1 SIKSDVPVYLK 11 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.008)IKS(0.992)DVPVYLK 122.33 4.53E-05 211440000 763180 830050 351860 357290 631400 982850 1132800 1013100 648590 1020700 TRUE FALSE FALSE 709685.0231 764273.815 488109.6151 831789.1764 552203.9244 861595.9599 849361.4585 782439.2458 704810.3034 765110.0764 0.927559373 0.998907005 0.637959988 1.087149682 0.721731345 1.126107192 1.110116681 1.02264925 0.921188108 1 19.5453078 -6.27874966 24.95092826 1.042059348 0.880218812 0.274174963 0.13092268 1099.712065 1585113.154 0.044474643 0.039317323 5.26E-07 6.27874966 -0.161840536 SIKS(ph)DVPVYLKR ddPTM_HeLa_A486_30min_R1 2 SIKSDVPVYLKR 12 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.001)IKS(0.999)DVPVYLKR;SIKS(1)DVPVYLKR ; 112.5 0.00015937 642910000 1064140 987160 438590 540480 925980 1075220 1524270 1490760 738930 1545540 TRUE FALSE FALSE 989549.2812 908933.8464 608423.7938 1258264.754 809834.954 942570.2884 1142881.524 1151346.491 802981.0474 1158526.724 0.854144545 0.784560103 0.525170271 1.086090401 0.699021384 0.813593911 0.986495607 0.993802272 0.69310533 1 20.14385989 -6.112012253 0.88338351 0.911999379 0.763817681 0.107274035 0.156880387 1.364030543 2.324064467 0.091758494 0.099816579 7.73E-07 6.112012253 -0.148181698 SILAKPS(ph)SSPDPR ddPTM_HeLa_A485_30min_R1 2 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.124)ILAKPS(0.292)S(0.292)S(0.292)PDPR;S(0.026)ILAKPS(0.445)S(0.445)S(0.084)PDPR ; 68.173 0.0058525 1454940000 2537500 2976400 2056610 2750800 3323700 2713500 3396300 3817100 2160940 3425900 TRUE FALSE FALSE 3101958.121 3324464.089 2817435.622 2901069.239 2992780.758 2855574.664 2670652.76 2880950.24 2594620.837 2571886.179 1.206102411 1.292617113 1.095474459 1.127992857 1.163652102 1.11030367 1.038402392 1.120170194 1.008839683 1 21.29439537 -1 0.158558354 0.972877802 2.046912781 0.669883382 0.049143063 37.24169012 0.382592963 0.148423552 9.323527983 0.1 1 1.074034979 SILAKPS(ph)SSPDPR ddPTM_HeLa_A486_30min_R1 3 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.09)ILAKPS(0.303)S(0.303)S(0.303)PDPR;S(0.006)ILAKPS(0.331)S(0.331)S(0.331)PDPR;SILAKPS(0.333)S(0.333)S(0.333)PDPR ;; 88.507 0.00084706 2450620000 6888400 5976300 3538480 2073340 5445600 5270200 6633500 6519200 4618230 6756500 TRUE FALSE FALSE 6405558.732 5502716.223 4908674.22 4826840.301 4762562.07 4620016.307 4973728.138 5034920.473 5018541.895 5064628.423 1.264763808 1.086499495 0.969207178 0.953049246 0.940357648 0.912212293 0.982051934 0.994134229 0.990900314 1 22.272025 -4.37210432 1.952664032 0.963295494 1.317372187 0.924297895 0.026328722 0.156334847 0.763161679 0.007895455 0.091900936 4.25E-05 4.37210432 0.354076693 SILAKPSSS(ph)PDPR ddPTM_HeLa_A485_30min_R1 1 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.017)ILAKPS(0.123)S(0.123)S(0.737)PDPR 62.055 0.012313 1138600000 1864100 2040500 1550900 1935400 2303300 1917700 2522500 2575700 1655200 2400000 TRUE FALSE FALSE 2278762.614 2279118.725 2124642.448 2041126.001 2073975.365 2018107.807 1983547.268 1944005.536 1987383.458 1801724.169 1.264767745 1.264965395 1.179227367 1.132873742 1.151105924 1.120098094 1.100916168 1.078969562 1.103045345 1 20.78094673 -1 0.171002212 0.999713156 2.159702029 0.92519101 0.021099241 14.9547307 0.162334212 0.055886154 4.446507317 0.1 1 1.159988873 SILAKPSSS(ph)PDPR ddPTM_HeLa_A486_30min_R1 1 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.006)ILAKPS(0.129)S(0.129)S(0.735)PDPR 78.069 0.0031168 224110000 1426200 1246200 701990 502600 1117400 1101500 1352400 1264000 1019800 1470200 TRUE FALSE FALSE 1326230.745 1147446.573 973819.3279 1170078.2 977245.2727 965608.1292 1014015.216 976214.7929 1108197.085 1102052.351 1.203419007 1.041190623 0.883641623 1.061726514 0.886750318 0.876190799 0.920115288 0.885815263 1.005575719 1 20.07176133 -4.392185683 2.597222835 0.935203984 1.224134938 0.635960362 0.061079535 0.221776391 2.301858513 0.015718101 0.121520112 4.05E-05 4.392185683 0.288930954 SILKPSTPIPPQEGEEVGES(ph)SEEQDNAPK ddPTM_HeLa_A485_30min_R1 1 SILKPSTPIPPQEGEEVGESSEEQDNAPK 29 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;A0A3B3ISZ5;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SILKPSTPIPPQEGEEVGES(0.5)S(0.5)EEQDNAPK 130.26 1.88E-06 207130000 84722 62545 38405 122530 100260 85326 138110 139190 64428 161970 TRUE FALSE FALSE 103568.1166 69859.09368 52612.60767 129223.5036 90277.76237 89793.53742 108601.6702 105053.4343 77358.10863 121593.8598 0.851754494 0.574528136 0.43269132 1.06274695 0.742453299 0.738470985 0.89315094 0.863969895 0.636200781 1 16.89171085 -13.99999998 0.039108773 2.103174397 0.100995281 0.156407445 0.16935845 1597.647881 4.660339464 212.2343259 65.41646715 1.00E-14 13.99999998 -2.002179116 SILKPSTPIPPQEGEEVGES(ph)SEEQDNAPK ddPTM_HeLa_A486_30min_R1 2 SILKPSTPIPPQEGEEVGESSEEQDNAPK 29 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;A0A3B3ISZ5;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SILKPSTPIPPQEGEEVGES(0.5)S(0.5)EEQDNAPK;SILKPSTPIPPQEGEEVGES(0.5)S(0.5)EEQDNAPK ; 181.38 1.03E-20 387990000 341848 305716 138201 168206 297132 383390 508590 464440 245854 567110 TRUE FALSE FALSE 317886.2205 281489.9508 191716.1284 391592.0687 259862.9339 336091.2398 381335.4027 358697.1507 267164.8227 425101.9647 0.747788171 0.66217043 0.450988573 0.921172098 0.611295537 0.790613236 0.897044555 0.843790856 0.628472331 1 18.6974494 -6.025089241 1.013028549 0.831792747 0.650158073 0.217408906 0.141187926 0.858492722 1.892842788 0.071203041 0.082189537 9.44E-07 6.025089241 -0.181634674 SILKPSTPIPPQEGEEVGESS(ph)EEQDNAPK ddPTM_HeLa_A485_30min_R1 1 SILKPSTPIPPQEGEEVGESSEEQDNAPK 29 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;A0A3B3ISZ5;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SILKPSTPIPPQEGEEVGES(0.428)S(0.572)EEQDNAPK 87.882 1.93E-06 0 82827 61597 31515 110700 83707 75764 115900 116100 52039 122740 TRUE FALSE FALSE 101251.5804 68800.23333 43173.70995 116747.2607 75372.83717 79730.88589 91137.01818 87626.29296 62482.74997 92143.17686 1.098850548 0.746666608 0.468550265 1.267020138 0.817996945 0.865293434 0.989080486 0.950979725 0.678105011 1 16.49158972 -5.253489136 24.99866187 0.930365744 0.768886938 0.126243093 0.200530797 1359.063122 4273413.678 0.054232265 0.091825162 5.58E-06 5.253489136 -0.161478806 SILLGLLLGAGR ddPTM_HeLa_A486_30min_R1 1 SILLGLLLGAGR 12 0 H0YFP3;A0A494C0D4;A0A494C146;P50336 H0YFP3 PPOX Protoporphyrinogen oxidase 0 0 140.75 0.00064825 2716100 2165.3 1838 1990 987.7 3201.9 2288 2670.8 2237.6 2229.7 2454.7 FALSE FALSE TRUE 2013.523652 1692.350186 2760.581294 2299.415516 2800.287845 2005.729823 2002.537591 1728.147326 2422.972191 1840.027143 1.09429019 0.919741968 1.500293789 1.249663911 1.521873118 1.090054476 1.088319593 0.939196649 1.316813288 1 10.84551133 -6.469839664 24.99935565 1.082181879 1.256960855 0.170734232 0.18759243 622.080272 293210.2954 0.068238872 0.06018058 3.39E-07 6.469839664 0.174778976 SILPYPVS(ph)PK ddPTM_HeLa_A485_30min_R1 1 SILPYPVSPK 10 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 0 SILPYPVS(1)PK 98.105 0.0019963 130620000 242390 276650 180410 375420 334140 260620 409650 424260 220680 576660 TRUE FALSE FALSE 296308.8193 309001.811 247151.1665 395928.244 300871.8484 274265.6602 322124.931 320209.5698 264968.4518 432909.2746 0.684459393 0.713779605 0.570907534 0.914575564 0.694999775 0.633540735 0.744093393 0.739668999 0.612064623 1 18.72370518 -10.26045517 5.505891925 1.000025087 0.703995131 0.504765951 0.088831447 2.67E-05 3.58E-06 0.083856607 0.020336493 5.49E-11 10.26045517 -0.296029955 SILS(ph)PGGSCGPIK ddPTM_HeLa_A485_30min_R1 6 SILSPGGSCGPIK 13 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 0 SILS(1)PGGSCGPIK;SILS(0.991)PGGS(0.009)CGPIK;SILS(0.994)PGGS(0.006)CGPIK;SILS(1)PGGSCGPIK;SILS(1)PGGSCGPIK;SILS(1)PGGSCGPIK ;;;;; 329.38 8.03E-81 2304790000 2191590 2160640 1973910 2378520 3341410 2294390 3129200 3055040 2163370 3109700 TRUE FALSE FALSE 2679101.635 2413308.053 2704141.45 2508452.525 3008727.488 2414520.713 2460620.857 2305786.65 2597538.515 2334509.02 1.147608175 1.033754007 1.15833412 1.074509674 1.288805253 1.034273456 1.054020711 0.987696612 1.112670156 1 21.15468773 SILS(ph)PGGSCGPIK ddPTM_HeLa_A486_30min_R1 5 SILSPGGSCGPIK 13 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 0 S(0.001)ILS(0.679)PGGS(0.32)CGPIK;SILS(1)PGGSCGPIK;SILS(1)PGGSCGPIK;SILS(1)PGGSCGPIK;SILS(1)PGGSCGPIK ;;;; 266.6 9.47E-42 1822500000 3116840 3474330 2303770 1467175 3581190 3331210 3926510 4044090 2688890 3821050 TRUE FALSE FALSE 2898365.611 3199011.438 3195851.441 3415657.547 3132003.757 2920239.179 2944055.668 3123338.989 2921965.15 2864234.209 1.011916415 1.116881932 1.115778672 1.192520338 1.093487309 1.019553209 1.027868342 1.090462148 1.020155803 1 21.44971804 -6.133056682 5.166045196 1.037413651 1.113784825 0.388796138 0.04647597 0.256403286 9.718882671 0.015931991 0.015991774 7.36E-07 6.133056682 0.076371174 SILSPGGS(ph)CGPIK ddPTM_HeLa_A486_30min_R1 1 SILSPGGSCGPIK 13 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 0 SILS(0.056)PGGS(0.944)CGPIK 148.52 1.59E-06 0 123890 107760 59350 56241 131950 122820 130730 133030 94978 161550 TRUE FALSE FALSE 115205.9508 99220.70514 82331.90945 130931.8903 115399.6006 107667.7171 98019.97128 102741.973 103210.7695 121096.8285 0.951353988 0.819350155 0.679884936 1.08121651 0.952953121 0.889104351 0.809434669 0.848428273 0.852299526 1 16.88580156 -5.247096329 24.98924094 0.908342918 0.817111772 0.183499499 0.096962451 1631.423177 2842349.902 0.027693403 0.047685124 5.66E-06 5.247096329 -0.091231146 SILVS(ph)PTGPSR ddPTM_HeLa_A485_30min_R1 4 SILVSPTGPSR 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 SILVS(0.995)PT(0.005)GPSR;SILVS(0.994)PT(0.006)GPSR;SILVS(0.957)PT(0.043)GPSR;SILVS(0.995)PT(0.005)GPSR ;;; 176.97 6.22E-10 1277400000 796241 1010698 1017923 779565 1329510 941767 1109732 1241627 888593 1107277 TRUE FALSE FALSE 973362.0635 1128890.339 1394495.077 822150.662 1197139.316 991076.4639 872628.6925 937116.0315 1066925.464 831253.2218 1.170957342 1.358058302 1.67758156 0.989049595 1.440162017 1.192267817 1.049774809 1.127353262 1.283514381 1 19.6649285 -6.477384175 6.957482176 1.124869817 1.328898225 0.238845143 0.179356663 0.364005994 46.05113948 0.063510159 0.055075193 3.33E-07 6.477384175 0.204028408 SILVS(ph)PTGPSR ddPTM_HeLa_A486_30min_R1 3 SILVSPTGPSR 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 SILVS(0.759)PT(0.241)GPSR;SILVS(0.812)PT(0.188)GPSR;SILVS(0.979)PT(0.021)GPSR ;; 189.3 9.36E-11 1319500000 1172650 1211770 1034750 386400 1411580 1134970 1210370 1285490 1024630 1232990 TRUE FALSE FALSE 1090453.291 1115744.932 1435432.912 899558.7276 1234526.474 994948.9409 907522.624 992811.989 1113445.753 924241.2786 1.17983617 1.207200931 1.553093272 0.973294256 1.335718824 1.076503467 0.981910941 1.074191352 1.204713292 1 19.81791 -6.316114224 9.618936438 1.066494603 1.248886279 0.280387387 0.146073025 0.753480476 129.1801626 0.050652011 0.044692831 4.83E-07 6.316114224 0.182391676 SIMVQS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 SIMVQSPEK 9 0 Q14191 Q14191 WRN Werner syndrome ATP-dependent helicase 1 0 SIMVQS(1)PEK;SIMVQS(1)PEK ; 142.12 0.0001187 480030000 826960 689590 559000 1263040 985700 770770 1202480 990030 706160 1633840 TRUE FALSE FALSE 1010914.399 770231.5519 765797.3619 1332036.677 887560.247 811126.3254 945560.3246 747223.5902 847879.8347 1226553.757 0.824190863 0.627963958 0.624348797 1.085999427 0.723621156 0.661305158 0.77090818 0.609205741 0.691270016 1 20.22617903 -10.89917191 2.760300938 1.140075508 0.734111538 0.259795133 0.133961265 63879050.69 47835001.62 58420482.4 0.033887547 1.26E-11 10.89917191 -0.40596397 SIMVQS(ph)PEK ddPTM_HeLa_A486_30min_R1 2 SIMVQSPEK 9 0 Q14191 Q14191 WRN Werner syndrome ATP-dependent helicase 1 0 SIMVQS(1)PEK;SIMVQS(1)PEK ; 129.34 0.00042841 0 476700 451310 254190 271220 431430 539490 698800 601800 429360 794370 TRUE FALSE FALSE 443285.7917 415546.552 352619.1754 631413.8667 377316.0265 472933.2089 523952.8488 464783.2772 466577.2705 595454.5815 0.744449376 0.697864396 0.592184839 1.060389636 0.633660464 0.794238929 0.879920762 0.780552021 0.783564834 1 19.18363194 -14 0.100962515 1.699581548 0.627165222 0.264355448 0.121034148 259.1023544 1.772967245 38.32523757 1.96524777 1.00E-14 14 -1.072416326 SINHQIES(ph)PSER ddPTM_HeLa_A485_30min_R1 7 SINHQIESPSER 12 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SINHQIES(0.996)PS(0.004)ER;SINHQIES(1)PSER;SINHQIES(0.997)PS(0.003)ER;SINHQIES(0.969)PS(0.031)ER;SINHQIES(0.999)PS(0.001)ER;SINHQIES(0.996)PS(0.004)ER;SINHQIES(0.968)PS(0.032)ER ;;;;;; 230.23 1.55E-23 14165800000 1890531 3758940 3790540 1149142 3814700 2741770 3129210 3562730 2883130 2097500 TRUE FALSE FALSE 2311073.099 4198515.335 5192818.484 1211916.718 3434895.074 2885324.838 2460628.72 2688964.881 3461747.745 1574631.852 1.467691065 2.666347267 3.297798452 0.769650834 2.181395651 1.832380588 1.562669215 1.707678451 2.198448953 1 20.58658314 -5.25734515 24.9999979 1.668366467 2.496185691 0.304481325 0.597289535 454.7934259 2777028.723 0.160735462 0.266035808 5.53E-06 5.25734515 0.827819224 SINHQIES(ph)PSER ddPTM_HeLa_A486_30min_R1 6 SINHQIESPSER 12 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SINHQIES(0.988)PS(0.012)ER;SINHQIES(0.985)PS(0.015)ER;SINHQIES(1)PSER;SINHQIES(0.999)PS(0.001)ER;SINHQIES(0.969)PS(0.031)ER;SINHQIES(0.997)PS(0.003)ER ;;;;; 246.85 4.13E-28 10076100000 3407770 4088970 3882050 219852 4729310 2738230 2845770 3187880 3454240 1648360 TRUE FALSE FALSE 3168902.921 3764945.125 5385283.725 511826.5667 4136115.841 2400415.023 2133728.247 2462069.315 3753656.304 1235599.927 2.564667456 3.047058391 4.358436422 0.414233245 3.347455556 1.942712176 1.726876313 1.992610441 3.037922083 1 20.23678026 -5.245778245 24.94752655 2.016461727 3.29575434 0.33001937 0.907235218 994.3443139 1583946.091 0.236323268 0.407487034 5.68E-06 5.245778245 1.279292613 SINKLDS(ph)PDPFK ddPTM_HeLa_A485_30min_R1 1 SINKLDSPDPFK 12 1 B1AUU8;P42566;P42566-2 B1AUU8 EPS15 Epidermal growth factor receptor substrate 15 1 0 S(0.013)INKLDS(0.987)PDPFK 54.7 0.020313 134430000 215140 121130 82383 405240 184190 141220 252850 184170 131370 497280 TRUE FALSE FALSE 262997.1508 135295.0998 112859.8999 427377.2351 165851.3969 148614.0608 198826.5319 139002.0187 157734.754 373317.2478 0.704487008 0.362413204 0.302316329 1.144809777 0.444263955 0.39809053 0.532594015 0.372342879 0.42252201 1 18.51004264 -10.47331842 5.124204428 1.000964539 0.517892642 0.273832938 0.234256207 0.002609211 0.000268182 0.229269832 0.055502331 3.36E-11 10.47331842 -0.483071897 SIPAGAEPGEKGS(ph)AR ddPTM_HeLa_A485_30min_R1 4 SIPAGAEPGEKGSAR 15 1 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR ;;; 123.55 1.46E-05 2277250000 2002860 1849350 1595840 2053030 2792330 2088860 2613330 2968320 1806450 2707390 TRUE FALSE FALSE 2448389.297 2065615.395 2186207.624 2165181.83 2514315.821 2198229.48 2054970.697 2240334.866 2168987.945 2032487.499 1.20462699 1.016299188 1.075631523 1.065286666 1.237063363 1.081546372 1.011061912 1.102262556 1.067159304 1 20.95481505 -8.330545732 0.486340364 0.996152922 1.106736193 0.187393069 0.067420869 3.020034536 1.494751006 0.10227013 0.039201323 4.67E-09 8.330545732 0.110583271 SIPAGAEPGEKGS(ph)AR ddPTM_HeLa_A486_30min_R1 4 SIPAGAEPGEKGSAR 15 1 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR ;;; 144.72 4.10E-08 2372790000 2119460 2123660 1470880 832725 2253520 2224810 2598280 2513680 1689810 2428870 TRUE FALSE FALSE 1970896.799 1955373.447 2040444.128 1938625.884 1970862.508 1950335.562 1948162.862 1941369.937 1836284.091 1820665.143 1.08251471 1.073988512 1.120713568 1.064789916 1.082495876 1.071221455 1.070028099 1.066297087 1.008578705 1 20.79603418 -7.729579893 2.283126693 0.997457467 1.081257061 0.809771566 0.014637401 0.121350467 1.183226665 0.013695623 0.003979975 1.86E-08 7.729579893 0.083799594 SIPAS(ph)SPGAITHIMQQALSSHTAFTK ddPTM_HeLa_A485_30min_R1 1 SIPASSPGAITHIMQQALSSHTAFTK 26 0 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4;H0YCS3;H0YET8 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 S(0.071)IPAS(0.463)S(0.463)PGAIT(0.003)HIMQQALSSHTAFTK 102.91 0.00064748 66122000 33895 45423 43428 21912 53388 38920 50363 49813 39165 39931 TRUE FALSE FALSE 41434.82581 50734.82472 59493.82439 23108.99708 48072.50326 40957.79102 39602.53362 37596.28365 47025.05626 29976.93658 1.382223487 1.692461956 1.984653243 0.77089255 1.603649631 1.366310094 1.32110009 1.25417364 1.568707868 1 14.87156534 -9.469940728 0.055515251 6.14E-10 2.355331529 0.171902492 0.299290647 237.4963328 3.194645468 85.55318251 51.10500218 3.39E-10 9.469940728 2.355331529 SIPAYLAETLYYAMK ddPTM_HeLa_A485_30min_R1 1 SIPAYLAETLYYAMK 15 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 221.55 1.16E-22 22578000 20546 21347 24011 26963 34425 21683 30993 26471 22233 41898 FALSE FALSE TRUE 25116.38682 23843.34596 32893.66808 28435.92042 30997.52613 22818.28835 24371.09236 19978.94575 26694.95917 31453.59968 0.798521857 0.758048243 1.045783898 0.904059335 0.985500116 0.725458726 0.774826812 0.635187894 0.848709192 1 14.94093751 -6.272813549 24.48756261 0.77266016 0.899090659 0.142419976 0.117309591 910.265092 1959712.297 0.040983125 0.036467241 5.34E-07 6.272813549 0.126430499 SIPAYLAETLYYAMK ddPTM_HeLa_A486_30min_R1 2 SIPAYLAETLYYAMK 15 0 P08758;D6RBL5;D6RBE9 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 255.31 8.27E-41 32462000 46346 55583 41428 19651.2 56236 56562 60240 57445 49015 56249 FALSE FALSE TRUE 43097.38473 51178.40065 57470.03108 45748.98672 49182.3565 49583.95552 45167.31485 44366.02752 53263.65966 42163.88428 1.022139812 1.213797104 1.363015577 1.085027803 1.166456965 1.175981681 1.071232303 1.052228187 1.263253151 1 15.36372016 -6.744734718 22.67441619 1.101030787 1.177616174 0.106753991 0.104090186 190.0076935 257910.302 0.04002188 0.030879742 1.80E-07 6.744734718 0.076585386 SIQDLTVTGTEPGQVSS(ph)R ddPTM_HeLa_A485_30min_R1 1 SIQDLTVTGTEPGQVSSR 18 0 O43318-3;O43318;Q9UG54;O43318-4;O43318-2 O43318-3 MAP3K7;DKFZp586F0420 Mitogen-activated protein kinase kinase kinase 7 1 0 SIQDLTVTGTEPGQVS(0.071)S(0.929)R 334.62 1.22E-101 255070000 200470 246480 244980 165120 267470 238840 263650 301010 197180 224720 TRUE FALSE FALSE 245063.8599 275303.6919 335608.2965 174140.0875 240839.7477 251345.2931 207319.0237 227186.8255 236752.2174 168701.4397 1.452648302 1.631898889 1.989362374 1.032238301 1.427609321 1.489882325 1.228910815 1.346679827 1.403379946 1 17.36411276 -2.950955201 0.045426002 5.21E-12 3.429624731 0.336538398 0.221593299 481.0570998 2.421867684 56.52655682 143.1689725 0.001119553 2.950955201 3.429624731 SIQEIQELDKDDES(ph)LRK ddPTM_HeLa_A485_30min_R1 3 SIQEIQELDKDDESLRK 17 2 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2;J3KS60;J3KRE2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 1 0 SIQEIQELDKDDES(1)LRK;SIQEIQELDKDDES(1)LRK;SIQEIQELDKDDES(1)LRK ;; 177.93 1.09E-13 616630000 711016 406919 235177 1081040 541018 511538 908198 732777 360444 1336450 TRUE FALSE FALSE 869179.0562 454504.6373 322178.7588 1140094.478 487152.3483 538321.3387 714154.078 553062.2918 432781.8046 1003297.611 0.866322263 0.453010784 0.321119831 1.136347247 0.48555119 0.536551999 0.711806816 0.551244502 0.431359349 1 19.93631819 -10.32658069 3.394618087 1.002015915 0.608105127 0.208820285 0.227485429 68630591.47 99436835.31 1400035.294 0.055027886 4.71E-11 10.32658069 -0.393910788 SIQEIQELDKDDES(ph)LRK ddPTM_HeLa_A486_30min_R1 3 SIQEIQELDKDDESLRK 17 2 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2;J3KS60;J3KRE2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 1 0 SIQEIQELDKDDES(1)LRK;SIQEIQELDKDDES(1)LRK;SIQEIQELDKDDES(1)LRK ;; 286.05 2.33E-60 836648000 1224480 905940 305769 732380 618760 1061290 1518920 1311100 550105 1781870 TRUE FALSE FALSE 1138650.275 834150.015 424170.9456 1705017.652 541149.3511 930358.8302 1138870.151 1012591.151 597788.5443 1335678.154 0.852488507 0.624514231 0.317569726 1.276518334 0.405149511 0.696544169 0.852653124 0.758110139 0.447554332 1 20.34914099 -10.74215035 2.962839241 1.052487312 0.694834278 0.110617896 0.261622406 94150555.12 86290244.76 36406366.18 0.062958967 1.81E-11 10.74215035 -0.357653034 SIQEIQELDKDDESLRK ddPTM_HeLa_A485_30min_R1 1 SIQEIQELDKDDESLRK 17 2 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2;J3KS60;J3KRE2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 58.997 0.035785 9944500 10213 13037 13212 14125 21965 11567 18467 14510 10748 23136 FALSE FALSE TRUE 12484.84662 14561.56374 18099.6686 14896.61298 19778.08748 12172.63023 14521.37459 10951.39975 12905.02501 17368.62099 0.718816228 0.838383413 1.042090135 0.857673905 1.138725262 0.70084034 0.836069519 0.630527879 0.743008039 1 14.08419559 SIQFVDWCPTGFK ddPTM_HeLa_A485_30min_R1 3 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 153.38 3.61E-05 132509000 158860 151258 144140 172085.7 249273 167768.6 239192 225823 165545 253298 FALSE FALSE TRUE 194197.8589 168946.3073 197463.3842 181486.306 224454.5049 176552.7045 188086.6752 170439.5552 198768.363 190155.4702 1.021258335 0.888464093 1.038431258 0.954410125 1.180373642 0.928465031 0.989120507 0.896316866 1.045293952 1 17.53681992 -4.787362844 24.99983733 1.001639999 0.95486098 0.057358635 0.07928416 638.0636853 615329.1208 0.020467711 0.042628464 1.63E-05 4.787362844 -0.046779019 SIQFVDWCPTGFK ddPTM_HeLa_A486_30min_R1 3 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 210.15 2.95E-20 154008000 225973 288415 200024 130131.2 379661 293362 340524 321635 248597 291012 FALSE FALSE TRUE 210133.4596 265559.945 277478.6496 302952.0101 332040.3772 257169.9791 255321.2935 248405.7317 270145.5881 218140.701 0.963293226 1.217379167 1.27201686 1.388791769 1.522138581 1.178917909 1.170443169 1.13874087 1.23840066 1 17.73489945 -6.499098715 24.92398787 1.152203942 1.28350515 0.164131932 0.143590155 1477.582572 1548665.275 0.053940658 0.047297692 3.17E-07 6.499098715 0.131301208 SIQLDGLVWGASK ddPTM_HeLa_A485_30min_R1 1 SIQLDGLVWGASK 13 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;P29692-3;E9PQZ1;P29692-4;H0YE72;H0YE58;E9PQC9 P29692-2 EEF1D Elongation factor 1-delta 0 0 109.22 0.0038171 11831000 15265 16918 14624 17819 24422 20721 24711 26665 17457 27028 FALSE FALSE TRUE 18660.64659 18896.41293 20034.02616 18792.40685 21990.45993 21805.91952 19431.29298 20125.36694 20960.45977 20290.41701 0.919677825 0.931297416 0.987363943 0.926171544 1.083785509 1.074690555 0.957658631 0.991865615 1.033022622 1 14.3085109 -5.739560541 24.99714765 1.022364195 0.943728089 0.51693035 0.038970026 223.2128085 255025.2456 0.012417074 0.016017138 1.82E-06 5.739560541 -0.078636107 SIQPQVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SIQPQVSPR 9 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 SIQPQVS(1)PR;SIQPQVS(1)PR;SIQPQVS(1)PR;SIQPQVS(1)PR ;;; 147.83 8.52E-05 3560100000 1796940 2264350 2048350 1707520 2613760 2104890 2545250 2811470 1863160 2330790 TRUE FALSE FALSE 2196663.104 2529146.035 2806119.904 1800797.494 2353524.877 2215098.786 2001436.545 2121952.574 2237079.122 1749766.948 1.255403244 1.445418796 1.603710658 1.029164196 1.345050482 1.265939323 1.143830352 1.212705827 1.278501188 1 20.73873135 -6.680564681 0.038157407 1.32E-08 2.500395866 0.336358481 0.140327986 132.7127307 2.854346814 86.58844342 98.69278924 2.09E-07 6.680564681 2.500395853 SIQPQVS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SIQPQVSPR 9 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 SIQPQVS(1)PR;SIQPQVS(1)PR;SIQPQVS(1)PR ;; 138.63 0.00015299 3161820000 2030920 2180650 1677540 644660 2380930 1786530 1978830 2060610 1655090 1964360 TRUE FALSE FALSE 1888562.996 2007847.352 2327128.414 1500801.059 2082291.558 1566126.093 1483705.804 1591454.086 1798554.534 1472471.47 1.282580365 1.363589987 1.580423432 1.019239483 1.414147303 1.063603692 1.007629577 1.0808047 1.221452891 1 20.48980825 -5.905006274 1.110217617 1.075868075 1.37906371 0.406357967 0.147603593 0.492816075 1.294298891 0.066448462 0.0851786 1.24E-06 5.905006274 0.303195635 SIRDS(ph)GYIDCWDSER ddPTM_HeLa_A486_30min_R1 1 SIRDSGYIDCWDSER 15 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.083)IRDS(0.917)GYIDCWDSER 105.96 0.00014728 41138000 21923 25111 21454 13069 35730 23096 23203 30872 26474 24112 TRUE FALSE FALSE 20386.31091 23121.11291 29761.56336 30425.29247 31248.41023 20246.65034 17397.36398 23843.11953 28768.78764 18074.19826 1.127923387 1.279233113 1.646632561 1.683355026 1.728896064 1.120196318 0.962552459 1.319179927 1.591704773 1 14.14164403 -6.280298226 24.58473763 1.203914537 1.50040786 0.276859868 0.237746529 1014.272055 1322219.055 0.091269503 0.080636294 5.24E-07 6.280298226 0.296493323 SIRDT(ph)PAK ddPTM_HeLa_A485_30min_R1 6 SIRDTPAK 8 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 S(0.009)IRDT(0.991)PAK;S(0.001)IRDT(0.999)PAK;S(0.001)IRDT(0.999)PAK;S(0.001)IRDT(0.999)PAK;S(0.451)IRDT(0.549)PAK;S(0.005)IRDT(0.995)PAK ;;;;; 130.95 0.0012126 1.26E+11 22491100 19133600 13839400 27638300 24947000 19171400 29539900 31244500 17284200 30271300 TRUE FALSE FALSE 27494167.6 21371108.08 18959169.97 29148110.35 22463189.09 20175184.86 23228459.05 23581737.39 20752980.4 22725222.01 1.209852541 0.94041361 0.834278757 1.282632589 0.988469511 0.88778824 1.022144428 1.037690077 0.913213538 1 24.43779105 -5.9749139 24.99986962 0.973255438 1.052957874 0.112229673 0.124907997 628.2059071 626043.3471 0.039398376 0.044672075 1.06E-06 5.9749139 0.079702436 SIRDT(ph)PAK ddPTM_HeLa_A486_30min_R1 4 SIRDTPAK 8 1 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 S(0.029)IRDT(0.971)PAK;S(0.001)IRDT(0.999)PAK;S(0.011)IRDT(0.989)PAK;S(0.004)IRDT(0.996)PAK ;;; 105.36 0.0032174 43903300000 11800400 9147300 6818200 5649580 8839200 12413700 14442400 11522900 8081700 12978900 TRUE FALSE FALSE 10973252.9 8422434.634 9458389.638 13152507.75 7730505.114 10882223.91 10828758.76 8899387.213 8782228.263 9728898.962 1.127902853 0.865713034 0.972195279 1.351900951 0.794591983 1.118546297 1.113050799 0.914737346 0.902694981 1 23.21384511 -7.279887052 23.97386496 0.931537095 1.04364043 0.103313338 0.147357513 1193.502891 1551016.769 0.078936324 0.038053688 5.25E-08 7.279887052 0.112103335 SIRDT(ph)PAKNAQK ddPTM_HeLa_A485_30min_R1 3 SIRDTPAKNAQK 12 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 S(0.007)IRDT(0.993)PAKNAQK;S(0.009)IRDT(0.991)PAKNAQK;SIRDT(1)PAKNAQK ;; 153.24 8.70E-08 4843480000 1926050 5260680 1926710 1230970 7919700 9078400 14026200 39869300 2489900 2786830 TRUE FALSE FALSE 2354493.178 5875870.764 2639480.206 1298214.774 7131186.86 9553730.986 11029387.79 30091291.66 2989600.091 2092124.569 1.125407738 2.808566398 1.261626695 0.620524606 3.408586165 4.566521099 5.27185998 14.38312618 1.428978052 1 20.99653732 -6.327113385 1.838158566 6.543429219 1.594201298 0.188825826 3.5184126 0.463934656 3.091796279 1.448420952 1.263963568 4.71E-07 6.327113385 -4.949227921 SIRDT(ph)PAKNAQK ddPTM_HeLa_A486_30min_R1 2 SIRDTPAKNAQK 12 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 SIRDT(1)PAKNAQK;S(0.002)IRDT(0.998)PAKNAQK ; 127.57 3.57E-05 1785210000 3414000 1082640 1251250 2138700 5399800 1660380 4360700 5293800 733240 3022500 TRUE FALSE FALSE 3174696.23 996847.6635 1735767.51 4979001.684 4722506.733 1455539.197 3269606.737 4088517.303 796797.8336 2265646.327 1.401232042 0.439983793 0.766124655 2.197607643 2.084397144 0.64243884 1.443123182 1.804569961 0.351686768 1 21.11149124 -2.995972341 13.80330352 1.243659369 1.180437945 0 0.639255656 0 0 0.15026193 0 0.001009317 2.995972341 -0.063221424 SIS(ph)ADDDLQESSR ddPTM_HeLa_A485_30min_R1 5 SISADDDLQESSR 13 0 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR;S(0.001)IS(0.999)ADDDLQESSR ;;;; 334.24 1.53E-83 2898900000 1461485 1638604 1597478 1503750 2210400 1465354 2020930 1967120 1549401 1860070 TRUE FALSE FALSE 1786587.296 1830224.484 2188451.589 1585896.055 1990324.815 1542077.67 1589141.796 1484680.736 1860351.569 1396388.781 1.279434009 1.310684036 1.567222265 1.135712401 1.425337157 1.104332612 1.138036783 1.063228777 1.332259034 1 20.41326924 -6.270772952 24.784676 1.132177313 1.342710462 0.409534164 0.129683319 615.7197913 1634998.461 0.04362133 0.039001706 5.36E-07 6.270772952 0.210533149 SIS(ph)ADDDLQESSR ddPTM_HeLa_A486_30min_R1 3 SISADDDLQESSR 13 0 P18615;P18615-3;A0A0A0MT02;P18615-4;A0A0G2JI50;E9PD43;A0A0A0MSN9;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR;SIS(1)ADDDLQESSR ;; 340.43 2.34E-81 1812170000 817180 897740 742930 350811 1059740 928520 1069020 1037940 797540 1041960 TRUE FALSE FALSE 759899.9019 826599.8129 1030612.392 816705.737 926817.5275 813968.6429 801539.8891 801623.7201 866671.4093 781046.434 0.972925384 1.058323522 1.319527684 1.045655804 1.18663563 1.042151411 1.026238459 1.026345791 1.109628534 1 19.57504879 -6.328870043 15.75632927 1.041596245 1.120704714 0.147995878 0.090591017 9.398716057 2194.135697 0.032357711 0.028536254 4.69E-07 6.328870043 0.079108469 SIS(ph)ASDLTFK ddPTM_HeLa_A485_30min_R1 2 SISASDLTFK 10 0 J3KP97;Q5T9S5 J3KP97 CCDC18 Coiled-coil domain-containing protein 18 1 0 SIS(0.999)ASDLTFK;S(0.001)IS(0.999)ASDLTFK ; 150.44 3.70E-06 165757000 454450 499280 417530 582930 659700 548110 727060 782360 473520 773530 TRUE FALSE FALSE 555540.8347 557666.4528 571991.7219 614773.9898 594017.9517 576808.1921 571717.6915 590484.9833 568551.1206 580703.2068 0.956669135 0.960329556 0.984998387 1.058671595 1.022928657 0.99329259 0.984526493 1.016844709 0.979073499 1 19.14744148 -4.959003955 4.958382155 1.008640248 0.960272464 0.458408958 0.02141601 0.17696898 10.20997399 0.006077974 0.012880139 1.10E-05 4.959003955 -0.048367784 SIS(ph)ASDLTFK ddPTM_HeLa_A486_30min_R1 1 SISASDLTFK 10 0 J3KP97;Q5T9S5 J3KP97 CCDC18 Coiled-coil domain-containing protein 18 1 0 S(0.023)IS(0.972)AS(0.005)DLTFK 74.237 0.011313 97499000 75434 63650 42470 45372 62722 76808 104730 87395 54476 131160 TRUE FALSE FALSE 70146.46614 58606.14219 58915.52139 105628.309 54854.8219 67332.20989 78525.44628 67497.06632 59198.02354 98316.68229 0.713474708 0.596095605 0.599242367 1.074368119 0.557940124 0.684850305 0.798699106 0.686527095 0.602115757 1 16.58514861 -9.948115821 3.988668435 1.000018317 0.704048891 0.284824261 0.141857638 40510893.01 82748368.38 10791.66796 0.034548502 1.13E-10 9.948115821 -0.295969426 SIS(ph)CGPSSR ddPTM_HeLa_A485_30min_R1 1 SISCGPSSR 9 0 Q5VU43-13;Q5VU43-2 Q5VU43-13 1 0 S(0.184)IS(0.816)CGPSSR 113.99 0.00075039 309640000 148960 201260 211290 195440 282310 190820 258540 308530 220600 248410 TRUE FALSE FALSE 182095.6381 224795.6063 289454.9635 206116.3923 254202.2251 200811.0401 203300.8169 232862.5337 264872.3965 186485.9586 0.976457635 1.205429127 1.552154198 1.105264942 1.363117239 1.076815872 1.090166887 1.248686686 1.420334262 1 17.50870748 -6.268285241 24.93777977 1.177929054 1.248339871 0.038285094 0.177499427 2385.818404 8690914.592 0.06302223 0.056680887 5.39E-07 6.268285241 0.070410818 SIS(ph)CGPSSR ddPTM_HeLa_A486_30min_R1 2 SISCGPSSR 9 0 Q5VU43-13;Q5VU43-2 Q5VU43-13 1 0 S(0.041)IS(0.959)CGPSSR;S(0.162)IS(0.838)CGPSSR ; 132.44 0.00021988 550580000 271280 364050 362350 167391 490880 388000 470090 477510 320700 349760 TRUE FALSE FALSE 252264.6729 335201.3522 502661.6241 389694.7075 429309.2531 340132.5049 352468.5099 368791.397 348498.5342 262177.8194 0.962189225 1.278526738 1.917254576 1.486375576 1.637473582 1.297335166 1.34438722 1.406646061 1.329244918 1 18.00018611 -6.318873482 24.49164865 1.305241901 1.473756701 0.107571906 0.250817724 599.7008854 255728.491 0.092487915 0.081566703 4.80E-07 6.318873482 0.1685148 SIS(ph)EIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE ddPTM_HeLa_A485_30min_R1 1 SISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE 35 1 P49902-2;P49902 P49902-2 NT5C2 Cytosolic purine 5-nucleotidase 1 0 S(0.143)IS(0.857)EIKPPNLFPLAPQEITHCHDEDDDEEEEEEEE 193.6 9.91E-22 56733000 11082 8270.1 6706 12096 11468 10410 14402 13995 9791.3 14568 TRUE FALSE FALSE 13547.15267 9237.216255 9186.82846 12756.77385 10326.20565 10955.0515 11324.89505 10562.70431 11756.3241 10936.4657 1.238713953 0.844625357 0.840018038 1.166443913 0.944199519 1.001699434 1.035516898 0.965824298 1.074965571 1 13.41685896 -5.246949027 24.97068122 1.021382887 0.961469773 0.035091807 0.11801261 2828.637751 4874479.256 0.031281987 0.053883147 5.66E-06 5.246949027 -0.059913114 SIS(ph)ESSR ddPTM_HeLa_A485_30min_R1 1 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 0 S(0.044)IS(0.955)ES(0.001)SR 112.8 0.0027555 372330000 257830 430320 414120 320860 417880 395060 406800 521360 395200 406170 TRUE FALSE FALSE 315183.394 480642.1807 567320.221 338387.7693 376274.3999 415744.7307 319883.8567 393495.6425 474513.015 304919.294 1.033661694 1.576293105 1.86055862 1.10976175 1.234013089 1.363458262 1.049077126 1.290491124 1.556192161 1 18.21806792 -5.311667065 24.99952911 1.239417509 1.498785772 0.196432391 0.241238176 579.3057983 288333.1647 0.068167875 0.101109447 4.88E-06 5.311667065 0.259368263 SIS(ph)ESSR ddPTM_HeLa_A486_30min_R1 1 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 0 SIS(0.999)ES(0.001)SR 150.36 0.00091279 483410000 414860 341060 308240 137910 441550 384420 398870 348140 330340 445670 TRUE FALSE FALSE 385780.4563 314033.1635 427598.783 321061.4496 386166.6817 336994.1689 299068.5072 268876.1218 358974.1372 334071.3312 1.154784683 0.940018296 1.27996252 0.961056576 1.1559408 1.008749143 0.895223503 0.804846441 1.074543379 1 18.34979666 -6.525294091 4.809425027 0.928927821 1.091845706 0.292721487 0.112485284 0.222329037 14.23965269 0.040486802 0.032661555 2.98E-07 6.525294091 0.162917884 SIS(ph)FPALLPIPGSNR ddPTM_HeLa_A485_30min_R1 1 SISFPALLPIPGSNR 15 0 O60296 O60296 TRAK2 Trafficking kinesin-binding protein 2 1 0 S(0.116)IS(0.884)FPALLPIPGSNR 73.91 0.0078342 8076100 13463 16372 12601 16281 17450 15544 25254 23074 16800 21073 TRUE FALSE FALSE 16457.7979 18286.56298 17262.63427 17170.3898 15712.61673 16357.8598 19858.27659 17415.06532 20171.6059 15819.88892 1.040323228 1.155922338 1.091198197 1.08536728 0.993219157 1.034005984 1.255272821 1.100833603 1.275078858 1 13.94945185 -6.739717597 24.99995231 1.166199179 1.069355245 0.224280466 0.082340907 333.6342379 383984.8643 0.030205923 0.02337691 1.82E-07 6.739717597 -0.096843934 SIS(ph)GTSTSEKPNSMDTANTSPFK ddPTM_HeLa_A486_30min_R1 1 SISGTSTSEKPNSMDTANTSPFK 23 1 Q9UJF2-2;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.393)IS(0.536)GT(0.039)S(0.022)T(0.005)S(0.005)EKPNSMDTANTSPFK 150.79 6.10E-10 795790000 190330 196800 66882 71739 131760 204960 224990 242810 126420 199460 TRUE FALSE FALSE 176988.8499 181204.8513 92780.50156 167012.0175 115233.4322 179674.1191 168695.1223 187527.4635 137378.1874 149513.9177 1.183761703 1.211959756 0.620547592 1.11703325 0.770720438 1.201721698 1.128290428 1.25424754 0.918832103 1 17.18992026 -6.318163867 24.9999745 1.118238298 0.981198642 0.08567686 0.191419988 683.9977201 301453.6432 0.067015861 0.059102457 4.81E-07 6.318163867 -0.137039656 SIS(ph)KDSLASNIVNLTPQNQPHPTATK ddPTM_HeLa_A485_30min_R1 2 SISKDSLASNIVNLTPQNQPHPTATK 26 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.025)IS(0.975)KDSLASNIVNLTPQNQPHPTATK;S(0.265)IS(0.72)KDS(0.014)LASNIVNLTPQNQPHPTATK ; 331.91 1.01E-123 725090000 803730 723090 465300 849090 1054730 816140 1455380 1517450 731650 1569750 TRUE FALSE FALSE 982516.9657 807649.0855 637433.8327 895473.6367 949717.3778 858871.8284 1144426.174 1145293.008 878485.4439 1178440.214 0.833743582 0.685354315 0.540913171 0.759880413 0.80591053 0.728820875 0.971136389 0.971871966 0.745464584 1 20.16844714 -6.409034203 1.334116518 0.917881974 0.697205259 0.439472457 0.103127026 0.412973046 1.490253007 0.053722218 0.042771082 3.90E-07 6.409034203 -0.220676715 SIS(ph)KDSLASNIVNLTPQNQPHPTATK ddPTM_HeLa_A486_30min_R1 1 SISKDSLASNIVNLTPQNQPHPTATK 26 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.152)IS(0.847)KDSLASNIVNLTPQNQPHPTATK 232.68 2.32E-39 395890000 581990 469670 211960 50183 447480 524930 696410 629650 428490 528070 TRUE FALSE FALSE 541195.5064 432451.6387 294036.5885 116828.5601 391352.8858 460169.4737 522160.8521 486292.4402 465631.8582 395837.8348 1.367215205 1.092496979 0.742820829 0.29514248 0.988669731 1.162520187 1.319128204 1.228514299 1.176319738 1 18.59454999 -6.175902615 4.187479658 1.201207116 0.857843904 0.217358776 0.266013603 0.352872186 11.32738129 0.09909543 0.09842178 6.67E-07 6.175902615 -0.343363212 SIS(ph)LGDSEGPIVATLAQPLR ddPTM_HeLa_A485_30min_R1 6 SISLGDSEGPIVATLAQPLR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 S(0.011)IS(0.989)LGDSEGPIVATLAQPLR;S(0.013)IS(0.987)LGDSEGPIVATLAQPLR;S(0.016)IS(0.983)LGDSEGPIVATLAQPLR;S(0.024)IS(0.976)LGDSEGPIVATLAQPLR;SIS(0.991)LGDS(0.009)EGPIVATLAQPLR;SIS(1)LGDSEGPIVATLAQPLR ;;;;; 319.89 4.66E-102 831454000 247604 268859 285241 254583 370969 248577 330161 304753 289742 348616 TRUE FALSE FALSE 302682.6556 300299.7213 390763.5158 268490.2247 334034.0238 261592.1073 259619.4052 230011.8489 347890.5617 261712.447 1.156546657 1.147441494 1.493102526 1.025897804 1.276339844 0.999540184 0.992002513 0.87887241 1.329285503 1 17.99762301 -6.266300848 24.73443188 1.02937354 1.220245935 0.250505128 0.155072158 489.433431 2490156.239 0.05231479 0.047623812 5.42E-07 6.266300848 0.190872394 SIS(ph)LGDSEGPIVATLAQPLR ddPTM_HeLa_A486_30min_R1 7 SISLGDSEGPIVATLAQPLR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 S(0.002)IS(0.998)LGDSEGPIVATLAQPLR;SIS(1)LGDSEGPIVATLAQPLR;S(0.167)IS(0.833)LGDSEGPIVATLAQPLR;S(0.022)IS(0.978)LGDSEGPIVATLAQPLR;S(0.002)IS(0.998)LGDS(0.001)EGPIVATLAQPLR;S(0.001)IS(0.999)LGDSEGPIVATLAQPLR;S(0.005)IS(0.995)LGDSEGPIVATLAQPLR ;;;;;; 284.07 8.52E-73 998489000 308948 329881 289277 124233.3 424417 333419 386698 385903 279789 339076 TRUE FALSE FALSE 287292.3406 303740.0282 401292.8015 289221.4008 371182.6623 292285.1537 289942.0703 298041.3111 304041.3358 254169.1626 1.130319421 1.195030999 1.57884142 1.137909091 1.460376462 1.149963083 1.140744484 1.172610037 1.19621646 1 17.95542948 -6.47003127 24.50742853 1.142287799 1.301477776 0.267103731 0.139153202 389.4377001 180597.2115 0.047964198 0.04230009 3.39E-07 6.47003127 0.159189977 SIS(ph)LTRPGSSSLSSGPNSILCR ddPTM_HeLa_A485_30min_R1 2 SISLTRPGSSSLSSGPNSILCR 22 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 S(0.001)IS(0.991)LT(0.009)RPGSSSLSSGPNSILCR;S(0.001)IS(0.995)LT(0.004)RPGSSSLSSGPNSILCR ; 240.12 5.17E-47 2982900000 28793 50446 39243.1 69858 46068.7 51746 93960 103310 68581 70931 TRUE FALSE FALSE 35197.90352 56345.22088 53760.75573 73674.16565 41481.93847 54455.34055 73884.67842 77973.06052 82344.57764 53249.20709 0.661003336 1.05814197 1.00960669 1.383573008 0.779015139 1.022650731 1.387526359 1.464304631 1.546400071 1 15.70047242 -6.75200856 6.395243555 1.389771204 0.997433726 0.385302491 0.222721898 0.149977288 25.05967367 0.087851563 0.064160245 1.77E-07 6.75200856 -0.392337478 SIS(ph)LTRPGSSSLSSGPNSILCR ddPTM_HeLa_A486_30min_R1 2 SISLTRPGSSSLSSGPNSILCR 22 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 S(0.007)IS(0.988)LT(0.005)RPGSSSLSSGPNSILCR;S(0.057)IS(0.94)LT(0.003)RPGSSSLSSGPNSILCR ; 207.73 2.19E-27 3224300000 106067 70149 32830 116338 150685 142275 196877 182430 99905 257509 TRUE FALSE FALSE 98632.25103 64590.13776 45542.65522 270840.7434 131784.6822 124722.557 147616.2922 140894.6714 108564.8458 193027.0703 0.510976263 0.334616993 0.235939214 1.403123111 0.682726428 0.646140238 0.764743992 0.729921825 0.562433267 1 17.55844366 SIS(ph)NEGLTLNNSHVSK ddPTM_HeLa_A485_30min_R1 7 SISNEGLTLNNSHVSK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SIS(1)NEGLTLNNSHVSK;S(0.108)IS(0.891)NEGLT(0.001)LNNSHVSK;SIS(1)NEGLTLNNSHVSK;S(0.002)IS(0.998)NEGLTLNNSHVSK;S(0.008)IS(0.992)NEGLTLNNSHVSK;S(0.002)IS(0.998)NEGLTLNNSHVSK;S(0.043)IS(0.957)NEGLTLNNSHVSK ;;;;;; 241.44 1.22E-41 8522040000 3272388 4539136 4126276 1664430 5948260 3839110 5129650 5547600 4262250 3679970 TRUE FALSE FALSE 4000319.421 5069948.47 5652757.201 1755353.596 5356030.349 4040119.863 4033658.372 4187042.402 5117644.479 2762621.204 1.448015897 1.835194946 2.046157176 0.635394239 1.938749453 1.462422665 1.460083766 1.515604961 1.852459712 1 21.39760633 -10.4111248 3.144070281 0.99195307 1.572819284 0.173466858 0.377823399 48548845.54 65021508.48 3543783.947 0.089707536 3.88E-11 10.4111248 0.580866214 SIS(ph)NEGLTLNNSHVSK ddPTM_HeLa_A486_30min_R1 5 SISNEGLTLNNSHVSK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.003)IS(0.997)NEGLTLNNSHVSK;S(0.006)IS(0.994)NEGLTLNNSHVSK;S(0.001)IS(0.999)NEGLTLNNSHVSK;SIS(1)NEGLTLNNSHVSK;SIS(1)NEGLTLNNSHVSK ;;;; 276.69 1.11E-58 6283210000 4688880 4507640 3712770 300068 5355700 3702330 4643870 4454130 4595640 1939070 TRUE FALSE FALSE 4360213.725 4150438.19 5150453.975 698573.4686 4683938.166 3245574.167 3481924.608 3440021.832 4993993.775 1453514.251 2.999773634 2.855450635 3.543449246 0.480609989 3.222492083 2.232915271 2.395521479 2.366692883 3.435806545 1 20.47111379 SIS(ph)NPPGSNLR ddPTM_HeLa_A486_30min_R1 2 SISNPPGSNLR 11 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 S(0.001)IS(0.999)NPPGS(0.001)NLR;S(0.002)IS(0.998)NPPGSNLR ; 78.809 0.0045915 230570000 319870 359340 307420 151148 347950 288540 381750 393030 280770 425110 TRUE FALSE FALSE 297448.7648 330864.5897 426461.257 351880.1826 304306.8665 252942.8685 286232.1123 303545.6488 305107.3697 318659.689 0.933437065 1.038300736 1.338296847 1.104250694 0.954958776 0.793771152 0.898237594 0.952569965 0.95747087 1 18.281657 -5.804681337 4.476667078 0.912748079 1.116840538 0.396114819 0.107144406 0.205721818 8.924233962 0.035678099 0.042149122 1.57E-06 5.804681337 0.204092459 SIS(ph)PEVSASR ddPTM_HeLa_A485_30min_R1 3 SISPEVSASR 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SIS(1)PEVSASR;S(0.005)IS(0.995)PEVSASR;S(0.002)IS(0.998)PEVSASR ;; 165.3 4.43E-07 1954850000 1437960 1489910 1642890 1522880 1939810 1559780 1808020 1765150 1464080 2011770 TRUE FALSE FALSE 1757829.241 1664142.014 2250663.377 1606071.078 1746675.705 1641447.669 1421721.757 1332244.195 1757907.427 1510272.763 1.163915078 1.101881763 1.490236355 1.063431135 1.156529965 1.086855109 0.941367541 0.882121579 1.163966847 1 20.5263777 -6.148294847 1.426625028 0.990934943 1.223030844 0.36013616 0.125857084 0.441586402 1.817602956 0.0553462 0.054856622 7.11E-07 6.148294847 0.232095901 SIS(ph)PEVSASR ddPTM_HeLa_A486_30min_R1 4 SISPEVSASR 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SIS(1)PEVSASR;S(0.006)IS(0.991)PEVS(0.003)ASR;SIS(1)PEVSASR;SIS(1)PEVSASR ;;; 194.52 2.33E-10 2972280000 3103450 3804400 3089130 1415980 3995650 3478910 3873440 3789800 3195940 3799570 TRUE FALSE FALSE 2885914.181 3502925.489 4285323.866 3296473 3494478.319 3049717.455 2904264.343 2926945.271 3472966.652 2848132.941 1.013265266 1.229902382 1.50460809 1.157415425 1.22693652 1.070777776 1.01970814 1.027671577 1.219383619 1 21.44158506 -6.239657023 3.806894926 1.064679239 1.24086225 0.280032181 0.12649344 0.308068404 9.98187669 0.04611353 0.043883243 5.76E-07 6.239657023 0.176183011 SIS(ph)PEVSASRR ddPTM_HeLa_A485_30min_R1 4 SISPEVSASRR 11 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 S(0.001)IS(0.999)PEVSASRR;S(0.026)IS(0.974)PEVSASRR;S(0.004)IS(0.996)PEVSASRR;S(0.002)IS(0.998)PEVSASRR ;;; 184.98 8.60E-11 1104260000 295977 593900 459910 226671 615790 567640 602160 898390 421048 367637 TRUE FALSE FALSE 361816.0625 663351.4388 630049.8475 239053.4628 554479.7854 597360.7527 473503.5968 678058.4439 505548.4715 275991.8618 1.310966418 2.403518113 2.282856616 0.866161275 2.009043969 2.164414374 1.71564333 2.456805935 1.831751372 1 18.0742662 SIS(ph)PEVSASRR ddPTM_HeLa_A486_30min_R1 1 SISPEVSASRR 11 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 S(0.007)IS(0.993)PEVSASRR 133.04 1.92E-05 231890000 130200 121650 121750 35942 169920 93416 130630 137990 92096 124160 TRUE FALSE FALSE 121073.6524 112010.011 168894.8606 83674.79241 148607.0492 81891.2837 97944.99234 106572.6893 100078.9554 93069.52785 1.300894666 1.203508963 1.814717067 0.899056806 1.596731525 0.879893619 1.052385186 1.145086816 1.075313883 1 16.50602127 -6.270808621 24.97735397 1.040969412 1.353445 0.336247396 0.233119179 824.9279534 2199159.675 0.077899375 0.069632052 5.36E-07 6.270808621 0.312475587 SIS(ph)PEWK ddPTM_HeLa_A485_30min_R1 3 SISPEWK 7 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 S(0.01)IS(0.99)PEWK;SIS(1)PEWK;SIS(1)PEWK ;; 128.6 0.001705 629710000 1008400 1019060 732130 1279340 1191190 1138970 1537710 1511720 894900 1992240 TRUE FALSE FALSE 1232715.101 1138230.202 1002975.353 1349227.105 1072590.941 1198604.708 1209165.697 1140968.3 1074498.221 1495611.232 0.824221612 0.76104684 0.670612343 0.902124212 0.717158923 0.80141462 0.80847594 0.762877595 0.718434175 1 20.51230378 -10.35527743 4.851967241 1.000168091 0.774200272 0.546204404 0.06178783 0.000107437 1.43E-05 0.057209436 0.013865054 4.41E-11 10.35527743 -0.225967819 SIS(ph)PEWK ddPTM_HeLa_A486_30min_R1 2 SISPEWK 7 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 SIS(1)PEWK;S(0.003)IS(0.997)PEWK ; 113.74 0.0026664 333690000 470840 488510 349990 213226 522480 545730 619360 544220 415240 705420 TRUE FALSE FALSE 437836.5474 449798.6885 485515.5011 496400.9038 456945.6865 478403.3812 464389.5771 420312.9862 451233.3375 528778.2405 0.82801544 0.850637666 0.918183586 0.938769537 0.864153725 0.904733487 0.878231254 0.794875723 0.853350806 1 19.01230328 -4.567712906 7.053996128 0.887030215 0.833396635 0.146197554 0.051944801 0.36730247 45.19827191 0.013488257 0.03676033 2.71E-05 4.567712906 -0.053633581 SIS(ph)PPSGLPQPHGGALR ddPTM_HeLa_A486_30min_R1 1 SISPPSGLPQPHGGALR 17 0 Q9P202;Q9P202-2 Q9P202 DFNB31 Whirlin 1 0 S(0.169)IS(0.81)PPS(0.021)GLPQPHGGALR 124.35 1.46E-05 355950000 119490 121480 120950 25277 136390 112650 118320 127440 100580 113480 TRUE FALSE FALSE 111114.368 111853.4824 167785.0792 58846.13343 119282.6944 98752.38834 88715.08454 98424.694 109298.3554 85063.86937 1.30624634 1.314935274 1.972459993 0.69178764 1.402272143 1.160920483 1.04292322 1.15706815 1.284897527 1 16.37625886 -5.264184402 24.99947138 1.124282995 1.509585989 0.382336815 0.24659654 268.9787003 2449650.085 0.066864241 0.104323516 5.44E-06 5.264184402 0.385302994 SIS(ph)PSALQDLLR ddPTM_HeLa_A485_30min_R1 3 SISPSALQDLLR 12 0 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 S(0.003)IS(0.997)PSALQDLLR;S(0.001)IS(0.999)PSALQDLLR;SIS(0.999)PSALQDLLR ;; 169.17 1.66E-10 323185000 179103 267668 281021 198163 298197 243164 271376 274952 176918 196465 TRUE FALSE FALSE 218943.8445 298969.4442 384982.3622 208988.1429 268507.4596 255895.691 213394.3007 207519.5909 212423.8198 147489.8912 1.484466784 2.027050409 2.610228804 1.416965876 1.820514325 1.735004949 1.44684018 1.407008909 1.440260198 1 17.17025655 -7.167596034 0.473961897 1.031709728 1.998206605 0.452450002 0.309353323 0.874968604 0.465243094 0.332558057 0.25136861 6.80E-08 7.167596034 0.966496877 SIS(ph)PSALQDLLR ddPTM_HeLa_A486_30min_R1 4 SISPSALQDLLR 12 0 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 SIS(1)PSALQDLLR;SIS(1)PSALQDLLR;S(0.001)IS(0.998)PS(0.001)ALQDLLR;S(0.002)IS(0.992)PS(0.006)ALQDLLR ;;; 211.82 1.18E-17 337428000 321681 316423 270002 135663 334645 265636 307388 329244 244907 340957 TRUE FALSE FALSE 299132.8231 291348.4891 374554.0053 315830.32 292670.7037 232864.5311 230476.2712 254282.3285 266135.7359 255579.1479 1.170411692 1.139954067 1.465510815 1.235743693 1.145127472 0.911124922 0.901780419 0.994925958 1.041304575 1 17.96341061 -6.035968557 3.175621531 0.96612963 1.258135128 0.688739796 0.089970553 0.152805021 3.120279372 0.03270969 0.034653182 9.21E-07 6.035968557 0.292005499 SIS(ph)QDSLDELSMEDYWIELENIKK ddPTM_HeLa_A485_30min_R1 2 SISQDSLDELSMEDYWIELENIKK 24 1 Q8N392-2;Q8N392 Q8N392-2 ARHGAP18 Rho GTPase-activating protein 18 1 0 S(0.093)IS(0.901)QDS(0.006)LDELSMEDYWIELENIKK;S(0.138)IS(0.862)QDSLDELSMEDYWIELENIKK ; 219.24 3.13E-38 73117000 52241 46045 33449.4 59784.8 64685 60332 90477 97559 44905 93656 TRUE FALSE FALSE 63861.83022 51429.56221 45823.72501 63050.69224 58244.73428 63490.89023 71145.84982 73632.50228 53917.02161 70309.28281 0.908298701 0.731476132 0.651745021 0.896761988 0.828407458 0.903022868 1.011898386 1.047265729 0.766854951 1 16.10142756 -6.023902573 1.407919871 0.957703476 0.772371817 0.356319126 0.09849505 0.437833628 1.781172977 0.041663296 0.045834009 9.46E-07 6.023902573 -0.185331659 SIS(ph)REPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_HeLa_A485_30min_R1 1 SISREPSPALGPNLDGSGLLPRPIFYCSFPTR 32 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 0 S(0.485)IS(0.518)REPS(0.997)PALGPNLDGSGLLPRPIFYCSFPTR 79.359 0.00052773 337310000 11270 11829 19190 15056 25163 14607 19888 21962 17140 12142 TRUE FALSE FALSE 13776.97262 13212.29865 26289.17956 15878.47116 22657.68337 15371.79993 15638.76633 16575.78506 20579.84078 9115.222857 1.511424661 1.449476207 2.884096195 1.741972896 2.485697138 1.686387725 1.715675697 1.818472826 2.257744117 1 13.15406221 SIS(ph)REPS(ph)PALGPNLDGSGLLPRPIFYCSFPTR ddPTM_HeLa_A486_30min_R1 1 SISREPSPALGPNLDGSGLLPRPIFYCSFPTR 32 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 0 S(0.443)IS(0.562)REPS(0.993)PALGPNLDGS(0.001)GLLPRPIFYCSFPTR 46.449 0.026603 364020000 11247 12960 10949 5484.7 18478 16779 16519 15845 9145.4 11121 TRUE FALSE FALSE 10458.64338 11933.0024 15188.74602 12768.65878 16160.31694 14708.97758 12385.77148 12237.43939 9938.130636 8336.229214 1.254601224 1.431462847 1.822016362 1.531706777 1.938564371 1.764464148 1.485776262 1.467982595 1.192161393 1 13.02517923 -7.767566006 1.48311289 1.002099632 1.626517041 0.544201192 0.188148073 0.303103912 1.342117982 0.188368306 0.057740832 1.71E-08 7.767566006 0.624417409 SIS(ph)SPSVSSETMDKPVDLSTR ddPTM_HeLa_A485_30min_R1 1 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.082)IS(0.478)S(0.417)PS(0.003)VS(0.003)S(0.013)ET(0.003)MDKPVDLSTR 73.981 0.0023756 168500000 130470 111740 117150 154880 164060 120960 168410 146680 141710 179080 TRUE FALSE FALSE 159492.6014 124807.021 160488.66 163340.7022 147725.6104 127293.2786 132427.8277 110706.5 170149.8972 134438.6517 1.186359721 0.928356685 1.193768741 1.214983192 1.098832876 0.946850306 0.985042813 0.823472257 1.265632279 1 17.03658845 -6.142576083 5.590995619 0.992486626 1.12476331 0.182861753 0.126806371 0.388199217 16.30780339 0.041450441 0.041548477 7.20E-07 6.142576083 0.132276683 SIS(ph)VGENLGLVAEPQAHAPIR ddPTM_HeLa_A485_30min_R1 1 SISVGENLGLVAEPQAHAPIR 21 0 O60336-4;O60336-3;O60336-6;O60336 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 S(0.01)IS(0.99)VGENLGLVAEPQAHAPIR 211.44 3.76E-27 282770000 85706 97601 89555 74244 116990 82563 102540 96250 75058 120570 TRUE FALSE FALSE 104771.004 109014.5879 122685.1212 78299.76172 105342.0648 86885.87101 80631.49133 72644.53659 90121.45213 90514.11793 1.157510081 1.204393198 1.355425253 0.865055789 1.163819161 0.959915127 0.890816739 0.80257686 0.995661828 1 16.46585521 -5.662977585 0.988655702 0.913556557 1.231885797 0.481072214 0.119430153 0.46313561 0.956374184 0.053207251 0.093733489 2.17E-06 5.662977585 0.31832924 SIS(ph)VGENLGLVAEPQAHAPIR ddPTM_HeLa_A486_30min_R1 2 SISVGENLGLVAEPQAHAPIR 21 0 O60336-4;O60336-3;O60336-6;O60336 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 S(0.157)IS(0.843)VGENLGLVAEPQAHAPIR;S(0.147)IS(0.853)VGENLGLVAEPQAHAPIR ; 164.35 1.18E-13 631650000 129366 141936 108996 60220 152267 131373 155006 140369 126706 181672 TRUE FALSE FALSE 120298.1114 130688.4744 151202.1702 140195.2034 133168.253 115165.535 116221.8593 108410.0429 137688.9781 136180.1487 0.883374799 0.95967346 1.110309921 1.029483406 0.977883005 0.84568519 0.853442006 0.796078165 1.011079657 1 17.05515689 -6.130640802 5.229790863 0.885984267 1.001478304 0.223305293 0.082365605 0.298436231 11.46329901 0.028018126 0.028127761 7.40E-07 6.130640802 0.115494037 SISADSFDQRDPGT(ph)PNDDSDIKECNSADHIK ddPTM_HeLa_A485_30min_R1 1 SISADSFDQRDPGTPNDDSDIKECNSADHIK 31 2 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 S(0.012)IS(0.012)ADS(0.051)FDQRDPGT(0.904)PNDDS(0.013)DIKECNS(0.006)ADHIK 58.49 0.011108 244890000 83005 81256 56771 113830 89029 80743 142800 134410 75075 166790 TRUE FALSE FALSE 101469.1759 90758.18237 77772.95534 120048.2447 80164.96016 84970.57863 112289.6134 101445.7368 90141.86387 125212.3225 0.810376917 0.72483427 0.621128606 0.958757431 0.640232195 0.678611952 0.896793631 0.810189722 0.719912082 1 16.93401702 -13.99999998 0.251516708 2.46095077 0.741225476 0.322038663 0.103224765 221.71011 2.198057245 166.4963844 0.147169867 1.00E-14 13.99999998 -1.719725294 SISASKAS(ph)PPGDLQNPK ddPTM_HeLa_A485_30min_R1 4 SISASKASPPGDLQNPK 17 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 SISASKAS(1)PPGDLQNPK;SISASKAS(1)PPGDLQNPK;SISAS(0.004)KAS(0.996)PPGDLQNPK;SIS(0.002)AS(0.003)KAS(0.996)PPGDLQNPK ;;; 184.62 5.46E-18 8113500000 2131110 1624450 1151470 3033970 2517280 2146510 3710470 3369870 1728020 4012980 TRUE FALSE FALSE 2605168.067 1814415.297 1577446.67 3199708.099 2266650.764 2258897.944 2917697.773 2543404.099 2074817.764 3012617.939 0.864752225 0.602271955 0.52361325 1.062102186 0.752385736 0.749812286 0.968492464 0.844250466 0.688709224 1 21.52258629 -5.247782796 24.94262245 0.854674927 0.657418441 0.310014417 0.137892973 973.8655653 1778682.276 0.03698363 0.063625459 5.65E-06 5.247782796 -0.197256486 SISASKAS(ph)PPGDLQNPK ddPTM_HeLa_A486_30min_R1 4 SISASKASPPGDLQNPK 17 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 SISASKAS(1)PPGDLQNPK;SISAS(0.008)KAS(0.992)PPGDLQNPK;SISAS(0.001)KAS(0.999)PPGDLQNPK;SIS(0.001)AS(0.012)KAS(0.987)PPGDLQNPK ;;; 198.84 2.68E-25 9537300000 3307180 2650280 1195480 1442660 2699670 3379560 4421060 4060150 2100860 4624920 TRUE FALSE FALSE 3075363.76 2440262.161 1658401.872 3358585.388 2361052.215 2962624.248 3314864.027 3135742.477 2282964.236 3466809.929 0.887087502 0.703892688 0.478365387 0.968782673 0.68104461 0.854567833 0.956171263 0.90450372 0.658520162 1 21.72517731 -5.978924899 1.298704711 0.872264186 0.718441003 0.143778304 0.149303765 0.853669817 2.99574082 0.064254146 0.07424895 1.05E-06 5.978924899 -0.153823184 SISASKAS(ph)PPGDLQNPKR ddPTM_HeLa_A485_30min_R1 1 SISASKASPPGDLQNPKR 18 2 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 S(0.004)IS(0.015)AS(0.1)KAS(0.88)PPGDLQNPKR 67.194 0.0036301 2159000000 1057900 1829300 978700 744290 1933900 2526700 3501200 5892600 1171700 1152500 TRUE FALSE FALSE 1293226.205 2043220.722 1340761.857 784948.6781 1741354.126 2658994.105 2753140.018 4447430.611 1406849.443 865202.9602 1.494708484 2.361550776 1.549650104 0.907242247 2.012653916 3.073260527 3.182074201 5.140332171 1.626034014 1 19.72267908 -6.17821237 3.790829733 3.09258162 1.617952047 0.199240605 1.088000413 0.310530879 8.445340542 0.364566799 0.360642925 6.63E-07 6.17821237 -1.474629573 SISASKAS(ph)PPGDLQNPKR ddPTM_HeLa_A486_30min_R1 1 SISASKASPPGDLQNPKR 18 2 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 S(0.005)IS(0.004)AS(0.004)KAS(0.988)PPGDLQNPKR 60.464 0.0099453 1038900000 1426500 895710 556200 445860 1316300 791300 1374100 1497700 602000 1519200 TRUE FALSE FALSE 1326509.716 824730.6775 771575.5356 1037984.613 1151197.38 693677.4513 1030285.646 1156706.405 654181.8447 1138782.432 1.164849123 0.724221462 0.677544291 0.911486324 1.010901949 0.609139579 0.904725624 1.015739594 0.574457268 1 20.11906071 -4.2504552 24.32202925 0.825443302 1.16484941 0.287818944 0.160208615 1452.767778 3216743.017 0.038766006 0.553545023 5.62E-05 4.2504552 0.339406108 SISGPSVGVMEMRS(ph)PLLAGGS(ph)PPQPVVPAHK ddPTM_HeLa_A486_30min_R1 1 SISGPSVGVMEMRSPLLAGGSPPQPVVPAHK 31 1 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 S(0.014)IS(0.015)GPS(0.083)VGVMEMRS(0.889)PLLAGGS(1)PPQPVVPAHK 95.26 0.00063061 140810000 84781 77281 79517 53732 150610 119930 150900 157270 81151 122680 TRUE FALSE FALSE 78838.28971 71156.97211 110308.1119 125090.8115 131719.0894 105134.256 113143.2239 121463.0542 88185.23402 91960.12949 0.857309468 0.773780686 1.199521059 1.360272241 1.432349978 1.143259112 1.230350855 1.320823001 0.958950738 1 16.48872088 -4.782810127 7.795990918 1.230111719 0.814925885 0.538865465 0.142974078 0.105977788 29.08367397 0.036945142 0.080983816 1.65E-05 4.782810127 -0.415185834 SISLGDS(ph)EGPIVATLAQPLR ddPTM_HeLa_A485_30min_R1 1 SISLGDSEGPIVATLAQPLR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 S(0.316)IS(0.316)LGDS(0.369)EGPIVATLAQPLR 81.317 0.0014513 20883000 17296 13066 17376 13973 21878 13280 20963 16673 15658 20632 TRUE FALSE FALSE 21143.43553 14593.95504 23804.10548 14736.30961 19699.7495 13975.32027 16484.0838 12583.92061 18800.41698 15488.8221 1.365077046 0.942224976 1.536857052 0.95141577 1.271868795 0.902284252 1.064256771 0.812451749 1.213805469 1 13.91893981 -5.987398479 1.452044726 0.993387285 1.225387791 0.205581063 0.195936626 0.627761226 2.719955918 0.074674366 0.084482899 1.03E-06 5.987398479 0.232000506 SISLYYTGEK ddPTM_HeLa_A485_30min_R1 2 SISLYYTGEK 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ; ; 271.37 2.05E-45 307370000 400320 466710 388920 434890 599620 497210 645300 693280 436210 620200 FALSE FALSE TRUE 489369.8029 521287.6747 532797.6923 458646.9395 539919.7274 523243.1468 507426.3834 523251.993 523753.3458 465595.5539 1.051062019 1.119614804 1.144335868 0.985075857 1.159632481 1.123814741 1.089843705 1.123833741 1.12491054 1 18.82871776 -4.246870625 22.8915575 1.101241299 1.051061903 0.051974222 0.05573023 2262.788399 3555267.334 0.013167218 0.2455175 5.66E-05 4.246870625 -0.050179396 SISLYYTGEK ddPTM_HeLa_A486_30min_R1 2 SISLYYTGEK 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ; ; 232.83 1.97E-26 239000000 445190 419420 271230 149424 430520 442760 511220 502120 359310 493620 FALSE FALSE TRUE 413984.48 386183.6317 376257.5198 347866.6235 376520.1672 388136.7729 383307.3489 387798.2372 390455.2801 370014.3391 1.118833613 1.043699097 1.016872808 0.940143629 1.017582638 1.048977653 1.035925661 1.048062727 1.055243646 1 18.49722165 -9.570464591 14.24052402 1.000015737 1.033155548 0.058659671 0.041927173 0 0 0.043377477 0.010520583 2.69E-10 9.570464591 0.033139811 SISPS(ph)ALQDLLR ddPTM_HeLa_A485_30min_R1 1 SISPSALQDLLR 12 0 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 S(0.008)IS(0.269)PS(0.723)ALQDLLR 72.29 0.010899 129050000 44109 62886 57396 45307 69805 55692 61798 64813 43322 54796 TRUE FALSE FALSE 53920.89488 70239.97066 78629.16885 47782.00669 62854.9691 58607.947 48594.35246 48917.51013 52016.32803 41136.36565 1.310784121 1.707490916 1.911427216 1.161551487 1.527966025 1.424723504 1.181299118 1.189154884 1.26448526 1 15.32812672 -6.657088787 0.521263863 1.053420828 1.625044624 0.449862813 0.19599326 0.868128504 0.502581031 0.188337786 0.173854754 2.20E-07 6.657088787 0.571623796 SISS(ph)PSVSSETMDKPVDLSTR ddPTM_HeLa_A485_30min_R1 1 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.002)IS(0.101)S(0.877)PS(0.015)VS(0.004)S(0.001)ETMDKPVDLSTR 154.14 3.83E-10 742990000 319500 292370 255190 384040 418870 366280 411640 433590 323420 571430 TRUE FALSE FALSE 390571.6727 326560.1282 349595.4003 405019.1328 377165.8321 385457.8544 323689.7512 327251.3727 388327.4274 428983.0174 0.910459521 0.761242555 0.814939954 0.944137918 0.879209239 0.898538727 0.754551435 0.762853911 0.905227973 1 18.71056101 SISS(ph)PSVSSETMDKPVDLSTRK ddPTM_HeLa_A485_30min_R1 2 SISSPSVSSETMDKPVDLSTRK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.004)IS(0.117)S(0.83)PS(0.017)VS(0.026)S(0.006)ETMDKPVDLSTRK;S(0.019)IS(0.102)S(0.689)PS(0.102)VS(0.076)S(0.012)ETMDKPVDLSTRK ; 141.36 5.69E-09 1316180000 406580 433040 247750 359740 552820 510000 747110 1010990 331010 534450 TRUE FALSE FALSE 497022.3183 483680.2611 339403.0347 379391.6853 497779.2997 536702.8114 587483.8452 763043.1173 397440.6708 401221.4508 1.238773045 1.205519446 0.845924449 0.945591729 1.240659737 1.337672276 1.464238375 1.901800404 0.990576825 1 18.61403921 -6.08120013 2.773883875 1.405381454 1.056145217 0.174621953 0.265730858 0.387078411 5.832146639 0.093240195 0.09649364 8.29E-07 6.08120013 -0.349236237 SISS(ph)PSVSSETMDKPVDLSTRK ddPTM_HeLa_A486_30min_R1 1 SISSPSVSSETMDKPVDLSTRK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.017)IS(0.12)S(0.861)PS(0.001)VSSETMDKPVDLSTRK 150.09 5.67E-10 285600000 375440 290710 162200 147130 364120 318970 420830 458900 223040 475150 TRUE FALSE FALSE 349123.5948 267673.0809 225008.1839 342526.0755 318448.6743 279618.7244 315533.8829 354418.4877 242373.2868 356169.3473 0.980217971 0.751533176 0.631744943 0.961694425 0.894093433 0.7850724 0.885909709 0.995084194 0.680500129 1 18.44220383 -5.294765141 24.99872464 0.881967596 0.784201937 0.121054838 0.120812448 1326.753642 995237.8523 0.033481078 0.049664233 5.07E-06 5.294765141 -0.09776566 SISSS(ph)NPDLAVAPGSVDDEVSR ddPTM_HeLa_A486_30min_R1 1 SISSSNPDLAVAPGSVDDEVSR 22 0 K7EKT0;K7ESB7;K7EP20;Q96HP0 K7EKT0 DOCK6 Dedicator of cytokinesis protein 6 1 0 SISS(0.007)S(0.993)NPDLAVAPGSVDDEVSR 385.73 6.01E-172 0 44286 53604 46608 16014 55169 42773 47976 51579 37768 42348 TRUE FALSE FALSE 41181.78009 49356.22382 64655.86581 37281.4013 48249.18959 37496.10214 35971.89736 39835.58766 41041.76065 31743.78516 1.297317881 1.554831082 2.036803912 1.174447254 1.519957036 1.181210809 1.13319496 1.254909818 1.292906956 1 14.95418655 -5.884269309 1.432102826 1.187218615 1.59082474 0.371596551 0.222263313 0.446589987 1.904041008 0.088373181 0.109552191 1.31E-06 5.884269309 0.403606125 SISVSALPASDS(ph)PTPSFSEGLSDTCIPLHASGR ddPTM_HeLa_A485_30min_R1 1 SISVSALPASDSPTPSFSEGLSDTCIPLHASGR 33 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 SISVSALPAS(0.008)DS(0.817)PT(0.164)PS(0.008)FS(0.002)EGLSDTCIPLHASGR 74.03 0.00076345 56949000 16220 38806 47237 8669.3 46127 21583 25137 22690 30346 13645 TRUE FALSE FALSE 19828.08304 43344.02413 64711.932 9142.881907 41534.43392 22713.05251 19766.2746 17125.24192 36436.16385 10243.55262 1.935664684 4.231346853 6.317332903 0.892549904 4.054690347 2.217302273 1.929630797 1.671806898 3.556985082 1 13.32242853 -5.276233661 24.98444298 2.285097008 4.168438283 0.305181368 1.358450841 979.717521 1654535.497 0.377532159 0.562602501 5.29E-06 5.276233661 1.883341275 SISVSALPASDS(ph)PTPSFSEGLSDTCIPLHASGR ddPTM_HeLa_A486_30min_R1 1 SISVSALPASDSPTPSFSEGLSDTCIPLHASGR 33 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 SISVSALPAS(0.095)DS(0.844)PT(0.053)PS(0.005)FS(0.001)EGLSDTCIPLHASGR 74.196 0.00075494 66315000 25877 34602 47448 3205.9 50697 20056 21322 21683 38420 11062 TRUE FALSE FALSE 24063.15593 31860.0115 65821.1363 7463.497217 44338.10953 17581.69463 15987.01008 16746.25424 41750.27653 8292.003198 2.901971376 3.842257503 7.93790532 0.900083736 5.347092671 2.120319326 1.928003366 2.019566784 5.035004876 1 13.01750496 -5.981054502 1.330000157 2.504286224 4.415878094 0.136755305 1.97370727 0.873926955 3.207127376 0.825676238 0.949121518 1.04E-06 5.981054502 1.91159187 SITS(ph)TPLSGK ddPTM_HeLa_A485_30min_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SIT(0.012)S(0.494)T(0.494)PLSGK;SIT(0.003)S(0.654)T(0.342)PLSGK ; 166.11 4.16E-07 904740000 2190070 2214060 1779200 2288100 2446600 2288200 3091100 2746900 1763860 2852300 TRUE FALSE FALSE 2677243.516 2472975.057 2437400.119 2413093.109 2203007.913 2408006.614 2430661.233 2073218.468 2117850.523 2141274.103 1.250303972 1.154908218 1.138294306 1.126942649 1.02883041 1.124567196 1.135147168 0.968217224 0.989060915 1 21.03003806 -1 0.193380005 0.971493316 2.182474185 0.706822896 0.046475825 32.06763343 0.378774069 0.098036307 11.65420347 0.1 1 1.21098087 SITST(ph)PLSGK ddPTM_HeLa_A485_30min_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SIT(0.001)S(0.055)T(0.944)PLSGK;SIT(0.005)S(0.241)T(0.753)PLSGK ; 198.81 5.05E-13 975630000 2694860 2647350 1888940 2650320 2940490 2776710 3578800 3220020 2044140 3473190 TRUE FALSE FALSE 3294322.31 2956934.554 2587737.511 2795100.271 2647724.491 2922094.242 2814160.144 2430305.046 2454380.148 2607387.652 1.263457049 1.134060197 0.992463667 1.071992601 1.015470212 1.120698044 1.079302551 0.932084281 0.9413177 1 21.31417366 -1.000000026 0.746201797 1.015683304 45.21263392 0.632512721 0.057965184 264.3147206 1.155778212 0.023726846 19626.79427 0.099999994 1.000000026 44.19695061 SITST(ph)PLSGK ddPTM_HeLa_A486_30min_R1 4 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SITS(0.001)T(0.999)PLSGK;SITS(0.053)T(0.947)PLSGK;SIT(0.002)S(0.161)T(0.836)PLSGK;SIT(0.001)S(0.057)T(0.943)PLSGK ;;; 199.12 4.95E-13 1966030000 6931200 6195500 3562360 1943180 6140400 5903900 6901400 6875800 4854160 7523300 TRUE FALSE FALSE 6445358.673 5704546.016 4941801.195 4523821.243 5370213.775 5175536.844 5174596.724 5310330.438 5274922.497 5639416.712 1.142912291 1.011548943 0.876296512 0.802178926 0.952264046 0.91774329 0.917576584 0.941645335 0.935366682 1 22.42711452 -4.445491022 2.993371986 0.913347256 1.144238656 0.661835999 0.049741752 0.173159491 2.669541621 0.013317235 0.075542834 3.59E-05 4.445491022 0.2308914 SITSTPLS(ph)GK ddPTM_HeLa_A485_30min_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SITS(0.002)T(0.039)PLS(0.958)GK;SITST(0.003)PLS(0.997)GK ; 117.86 0.0003348 0 343890 395430 278700 426990 396610 353410 475130 437490 322840 530090 TRUE FALSE FALSE 420387.1441 441672.0987 381802.7277 450315.3825 357122.1158 371914.0011 373614.594 330194.8915 387631.0267 397948.3186 1.05638628 1.109873011 0.95942792 1.131592625 0.897408279 0.934578647 0.938852048 0.82974315 0.97407379 1 18.60222156 -5.773854079 24.99995371 0.92135706 1.060081464 0.545826527 0.060124174 160.2456678 322691.701 0.017672885 0.020175888 1.68E-06 5.773854079 0.138724404 SITSTPLS(ph)GK ddPTM_HeLa_A486_30min_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SITST(0.001)PLS(0.999)GK;SITSTPLS(1)GK ; 152.67 2.98E-06 172601000 666240 614310 338110 272430 545770 596260 730290 661520 479960 835590 TRUE FALSE FALSE 619540.0165 565629.8383 469035.2469 634230.8078 477314.4375 522699.5035 547563.7178 510906.3369 521563.3192 626352.8252 0.989123049 0.903053065 0.748835525 1.012577548 0.762053619 0.834512886 0.874209704 0.815684573 0.832698917 1 19.25661603 -4.518334018 24.47871229 0.853088174 0.967605612 0.175007108 0.083213437 188.7559283 1016655.244 0.019649138 0.055247808 3.03E-05 4.518334018 0.114517438 SIVDNWPENHVK(ac)AVVVTDGER ddPTM_HeLa_A485_30min_R1 1 SIVDNWPENHVKAVVVTDGER 21 1 A0A1W2PQ37;A0A1W2PQF8;A0A1W2PQT3;A0A1W2PPH1;A0A1W2PQH3;A0A1W2PQY8;P23368-2;P23368 A0A1W2PQ37 ME2 "NAD-dependent malic enzyme, mitochondrial" 0 1 SIVDNWPENHVK(1)AVVVTDGER 99.441 3.08E-05 30186000 9563.4 12303 18899 11303 20851 11607 13380 12610 16569 18314 FALSE TRUE FALSE 11690.74534 13741.72883 25890.52655 11920.45427 18775.00123 12214.72457 10521.2537 9517.377728 19894.24632 13748.65684 0.850319087 0.999496095 1.883131338 0.867026823 1.365588031 0.888430391 0.76525684 0.692240547 1.446995626 1 13.74700306 -6.27915505 23.82646993 0.927266691 1.20257436 0.105035478 0.335566544 951.8446723 1280166.291 0.117960223 0.104295558 5.26E-07 6.27915505 0.275307669 SIVDYKPNLDLLEQQHQLIQEALIFDNK ddPTM_HeLa_A486_30min_R1 2 SIVDYKPNLDLLEQQHQLIQEALIFDNK 28 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 153.06 7.33E-09 80583000 72714 72914 39260 42606 112649 93504 109124 104008 69037 108231 FALSE FALSE TRUE 67617.1241 67136.02909 54462.52342 99188.92119 98519.51201 81968.42716 81820.021 80327.64888 75021.18275 81129.25313 0.83344936 0.827519378 0.671305618 1.222603652 1.214352508 1.010343668 1.008514412 0.990119418 0.924711862 1 16.30793459 -5.254236652 24.9994075 1.055636108 0.782434242 0.617061591 0.099425708 411.1667858 1427084.229 0.029817066 0.050288203 5.57E-06 5.254236652 -0.273201866 SIVECQPDASATPGVGTADS(ph)PAAPTDSRDDQK ddPTM_HeLa_A486_30min_R1 1 SIVECQPDASATPGVGTADSPAAPTDSRDDQK 32 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SIVECQPDASATPGVGTADS(0.999)PAAPT(0.001)DSRDDQK 219.07 3.40E-39 83134000 37402 33480 22742 17783 31131 32730 44714 50069 22408 43895 TRUE FALSE FALSE 34780.31294 30826.92287 31548.31145 41399.7227 27226.25969 28692.10537 33526.08426 38669.3817 24350.34348 32903.40629 1.057042929 0.936891536 0.958815971 1.258219965 0.827460217 0.872010184 1.018924423 1.175239468 0.740055399 1 15.00594932 SIVIRPLEPQPAPHLAR ddPTM_HeLa_A485_30min_R1 2 SIVIRPLEPQPAPHLAR 17 1 Q15029-3;Q15029;Q15029-2;K7EP67 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 ; ; 100.43 0.00037096 22133900 18352.4 25211 27617.9 20601.5 32570.1 23487.6 32141.7 34588 24546.8 32084.1 FALSE FALSE TRUE 22434.82806 28159.20714 37834.91049 21726.90778 29327.30648 24717.37442 25274.36322 26105.23877 29473.1176 24086.12433 0.93144201 1.169104948 1.570817702 0.902050802 1.217601723 1.026208039 1.049332922 1.083828947 1.223655462 1 14.55591465 SIYDDIS(ph)SPGLGST(ph)PLTSR ddPTM_HeLa_A486_30min_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 SIYDDIS(0.6)S(0.4)PGLGS(0.001)T(0.998)PLTSR 185.96 8.59E-18 130220000 259020 336900 295550 178900 390070 310560 371430 359470 281290 304960 TRUE FALSE FALSE 240864.0356 310202.817 409994.8751 416488.2411 341143.7833 272246.2647 278494.2854 277626.5282 305672.4437 228596.031 1.053666743 1.356991264 1.79353453 1.821939949 1.492343423 1.190949219 1.218281368 1.214485339 1.337173013 1 17.80244083 -6.230545035 5.702018752 1.206661608 1.531339787 0.33521024 0.217440404 0.246108126 24.73873152 0.079924138 0.078033079 5.88E-07 6.230545035 0.324678179 SIYDDIS(ph)SPGLGSTPLTSR ddPTM_HeLa_A486_30min_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SIYDDIS(0.591)S(0.374)PGLGS(0.014)T(0.017)PLT(0.002)S(0.002)R 55.437 0.0075391 0 118920 132160 125520 43849 156370 130750 130700 151860 125180 141010 TRUE FALSE FALSE 110584.3221 121687.1603 174124.7055 102082.688 136756.6165 114619.3944 97997.4776 117284.7931 136030.7032 105700.1782 1.046207528 1.151248393 1.647345431 0.965775931 1.293816329 1.084382225 0.927126891 1.109598821 1.286948665 1 16.68961828 -6.284661067 20.18016122 1.078805675 1.226530463 0.117894621 0.190081277 157.3919012 136773.9911 0.067443884 0.059579356 5.19E-07 6.284661067 0.147724788 SIYDDISS(ph)PGLGS(ph)TPLTSR ddPTM_HeLa_A485_30min_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 SIYDDIS(0.106)S(0.894)PGLGS(0.565)T(0.435)PLTSR 129.11 8.91E-06 111150000 238230 280380 279100 231410 384660 250720 352150 376820 253900 331340 TRUE FALSE FALSE 291223.4416 313168.002 382350.7043 244051.3423 346361.8998 263847.3115 276910.2757 284404.3042 304855.4011 248743.0359 1.170780282 1.25900209 1.537131293 0.981138392 1.392448631 1.060722406 1.113238305 1.143365896 1.225583663 1 17.92429661 -6.037882871 1.213554446 1.120601039 1.283028422 0.174783023 0.149918102 0.839967784 2.582280695 0.066745578 0.073700737 9.16E-07 6.037882871 0.162427383 SIYDDISS(ph)PGLGST(ph)PLTSR ddPTM_HeLa_A485_30min_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 SIYDDIS(0.026)S(0.974)PGLGS(0.012)T(0.876)PLT(0.069)S(0.043)R 210.07 1.59E-25 84150000 217020 243510 242240 190320 327570 244820 287410 317070 224390 287240 TRUE FALSE FALSE 265295.3503 271986.3762 331854.6564 200716.6997 294955.9806 257638.3966 226002.5056 239308.0854 269423.0148 215636.3543 1.230290464 1.261319675 1.53895505 0.930811042 1.367839767 1.194781824 1.048072373 1.109776161 1.249432248 1 17.7182409 -6.33181027 0.170661435 0.947697945 1.446829672 0.207781019 0.152464548 11.48280052 0.962696372 0.807535487 1.706242089 4.66E-07 6.33181027 0.499131728 SIYDDISS(ph)PGLGSTPLTSR ddPTM_HeLa_A485_30min_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SIYDDIS(0.15)S(0.848)PGLGS(0.001)T(0.001)PLTSR 86.488 0.00032712 0 57244 78802 75080 59019 88380 64034 77776 87303 71163 97747 TRUE FALSE FALSE 69977.73031 88017.20841 102855.2163 62243.05853 79580.57688 67386.72122 61158.52223 65891.80236 85444.76135 73380.4718 0.953628787 1.199463648 1.401670142 0.848223744 1.084492576 0.918319542 0.833444113 0.89794738 1.164407359 1 16.16310856 -5.278902031 24.97199524 0.957279491 1.186375169 0.345497321 0.139237517 852.9636036 1219755.565 0.039572349 0.058849463 5.26E-06 5.278902031 0.229095678 SIYFSS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SIYFSSPK 8 0 A2IDA3;P29372-5;P29372-4;P29372-2;P29372 A2IDA3 MPG DNA-3-methyladenine glycosylase 1 0 SIYFS(0.006)S(0.994)PK 96.957 0.0023523 0 436820 388550 227880 265320 380440 461450 572770 524730 305880 710710 TRUE FALSE FALSE 406201.1737 357759.8829 316121.2388 617678.3685 332721.6677 404520.9907 429456.8879 405260.4338 332393.9247 532743.5901 0.762470317 0.671542351 0.593383468 1.159429001 0.624543728 0.759316486 0.80612305 0.760704476 0.623928529 1 19.0230818 -11.26608865 2.26018588 1.980025854 0.75468726 0.192218124 0.15282242 27520496.12 4149579.153 137877086.2 0.038307815 5.42E-12 11.26608865 -1.225338594 SIYGEK ddPTM_HeLa_A485_30min_R1 2 SIYGEK 6 0 P62937;C9J5S7;F8WE65;P62937-2;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34;P0DN37 P62937 PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C" 0 0 ; ; 127.66 0.017433 243950000 485690 460470 398180 625410 609140 489930 660740 591440 477110 876330 FALSE FALSE TRUE 593730.0649 514317.9609 545483.3517 659574.5647 548491.8828 515581.9772 519567.5013 446388.4127 572861.6007 657877.0587 0.902493949 0.781784308 0.829156975 1.002580278 0.833730065 0.783705664 0.789763824 0.67852862 0.870773031 1 19.32745848 -5.994999965 24.99818755 0.803002299 0.874706125 0.047945594 0.093421321 315.5287032 1577499.749 0.028576406 0.032295688 1.01E-06 5.994999965 0.071703827 SIYGEK(ac)FEDENFILK ddPTM_HeLa_A485_30min_R1 1 SIYGEKFEDENFILK 15 1 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 SIYGEK(1)FEDENFILK 183.58 2.14E-10 17927000 3499.7 4977 4775.3 5070.9 6855.6 4396 8128.4 8382.1 4858.8 7339.7 FALSE TRUE FALSE 4278.196191 5559.016856 6541.882187 5347.910427 6173.032393 4626.167762 6391.700937 6326.376832 5833.916592 5510.047867 0.776435395 1.008887217 1.18726413 0.970574223 1.120322825 0.839587581 1.160008242 1.14815279 1.058777842 1 12.42784914 -4.293736802 3.88428273 1.062281124 0.757379964 0.421533297 0.099142782 0.205621511 6.073724397 0.024535602 0.167037556 5.08E-05 4.293736802 -0.30490116 SIYGEK(ac)FEDENFILK ddPTM_HeLa_A486_30min_R1 1 SIYGEKFEDENFILK 15 1 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 SIYGEK(1)FEDENFILK 134.61 8.07E-05 25184000 5109.9 5020.9 4560.1 2733.5 7680.9 7288.4 9974.9 7786 4631.5 7568.1 FALSE TRUE FALSE 4751.722398 4623.025598 6325.892844 6363.726143 6717.4899 6389.231311 7479.074516 6013.297767 5032.962149 5672.9985 0.837603323 0.814917472 1.115088052 1.121757064 1.184116284 1.126252953 1.318363563 1.059985785 0.887178473 1 12.46989577 -4.762918015 24.9071276 1.116025104 0.826260312 0.509976409 0.107212846 26.58994425 447937.2813 0.028807546 0.065650023 1.73E-05 4.762918015 -0.289764792 SIYGEKFEDENFILK ddPTM_HeLa_A485_30min_R1 2 SIYGEKFEDENFILK 15 1 P62937;C9J5S7;F8WE65;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ; ; 185.26 2.35E-11 105210000 79653 82407 70980 115162 141554 113778 182828 186133 89013 182535 FALSE FALSE TRUE 97371.53505 92043.7818 97238.45572 121453.0085 127460.3867 119735.2401 143765.3042 140483.5899 106877.0926 137032.3838 0.710573168 0.671693648 0.709602015 0.886308806 0.93014792 0.873773314 1.04913379 1.025185332 0.779940403 1 17.06415735 -5.337420898 2.319479451 0.946749324 0.685728731 0.69264699 0.073369832 0.170930163 1.796651592 0.022513756 0.039456022 4.60E-06 5.337420898 -0.261020592 SK(ac)HTK(ac)RSSLDEK ddPTM_HeLa_A485_30min_R1 1 SKHTKRSSLDEK 12 3 Q9NWB6-3 Q9NWB6-3 ARGLU1 Arginine and glutamate-rich protein 1 0 2 SK(1)HTK(1)RSSLDEK 45.973 0.02009 0 3075.6 2260 1774.7 3480.5 3675.3 3179.4 5478.8 4815.3 2483.1 3898.3 FALSE TRUE FALSE 3759.756609 2524.287341 2431.235381 3670.630902 3309.374227 3345.868468 4308.209622 3634.340125 2981.435394 2926.525553 1.284716823 0.862554348 0.830758296 1.254262379 1.130820206 1.143290365 1.472124382 1.241861743 1.018762809 1 11.51497316 -5.277314292 24.92411343 1.198810937 0.979664265 0.197364528 0.169770926 1055.46555 1657111.865 0.048314642 0.071935049 5.28E-06 5.277314292 -0.219146672 SK(ac)LSNVAR ddPTM_HeLa_A485_30min_R1 1 SKLSNVAR 8 1 E7EVV3;Q8TC71-2;Q8TC71 E7EVV3 SPATA18 Mitochondria-eating protein 0 1 SK(1)LSNVAR 116.9 0.015735 166910000 25791 30114 41858 43840 57573 17852 32954 84323 46918 225650 FALSE TRUE FALSE 31528.11897 33635.57034 57343.01606 46234.86819 51840.82997 18786.70312 25913.10869 63642.65204 56334.01224 169399.6078 0.186116836 0.198557546 0.338507372 0.272933738 0.306026859 0.110901692 0.152970299 0.375695392 0.332551019 1 17.37007101 -8.595365767 1.092133918 1.001223313 0.232991335 0.901247987 0.075167454 0.790525762 1.184683551 0.078487165 0.023987379 2.54E-09 8.595365767 -0.768231977 SKDAS(ph)PINR ddPTM_HeLa_A485_30min_R1 4 SKDASPINR 9 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.001)KDAS(0.999)PINR;SKDAS(1)PINR;SKDAS(1)PINR;SKDAS(1)PINR ;;; 102.87 0.00070891 803182000 760293 621133 516359 1022917 727378 615128 791583 630308 609004 1188766 TRUE FALSE FALSE 929417.5549 693769.1012 707381.6816 1078796.366 654957.6923 647335.1509 622454.8254 475723.9747 731225.5167 892428.5138 1.041447624 0.777394593 0.792648006 1.208832247 0.733904937 0.72536359 0.697484242 0.533066758 0.819365927 1 19.76737708 -5.949174643 24.99991246 0.723090786 0.935859553 0.268482932 0.159374161 133.6816661 65754.44073 0.048544158 0.055043892 1.12E-06 5.949174643 0.212768767 SKDAS(ph)PINR ddPTM_HeLa_A486_30min_R1 5 SKDASPINR 9 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 SKDAS(1)PINR;SKDAS(1)PINR;S(0.001)KDAS(0.999)PINR;S(0.001)KDAS(0.999)PINR;S(0.075)KDAS(0.925)PINR ;;;; 117.2 0.0003448 861670000 1143582 1105770 633357 443446 859676 1163443 1231490 1037199 911981 1410980 TRUE FALSE FALSE 1063422.807 1018144.758 878609.7923 1032364.699 751847.4199 1019909.232 923358.1766 801051.4296 991032.2474 1057661.424 1.005447285 0.962637698 0.830709878 0.976082397 0.710858317 0.964305976 0.873018677 0.75737983 0.937003303 1 20.01244644 -4.610590472 5.027686192 0.872742681 0.995934813 0.174313014 0.089930841 0.280352135 11.68786788 0.021681167 0.061616209 2.45E-05 4.610590472 0.123192131 SKDAS(ph)PINRWS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.004)KDAS(0.996)PINRWS(0.997)PT(0.003)R 109.03 0.00019254 592200000 176340 204030 166710 228780 276660 249440 333490 369310 184620 317800 TRUE FALSE FALSE 215566.2246 227889.5337 228382.9664 241277.6721 249114.759 262500.2927 262237.1371 278736.1434 221671.5406 238578.3087 0.903544944 0.955198044 0.957266265 1.011314371 1.044163488 1.100268898 1.099165882 1.168321399 0.929135351 1 17.86410335 -5.381961129 1.359713968 1.072084277 0.925723141 0.423526807 0.061505488 0.393736304 1.436666351 0.020968314 0.044152855 4.15E-06 5.381961129 -0.146361136 SKDAS(ph)PINRWS(ph)PTR ddPTM_HeLa_A486_30min_R1 2 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.122)KDAS(0.878)PINRWS(0.957)PT(0.043)R;S(0.082)KDAS(0.918)PINRWS(0.575)PT(0.425)R ; 82.8 0.012494 2935200000 2229940 2123700 1477330 979160 2578100 2336400 3015500 3032700 1881830 2863900 TRUE FALSE FALSE 2073632.721 1955410.278 2049391.74 2279533.964 2254730.658 2048158.723 2260990.005 2342220.413 2044948.54 2146760.799 0.965935619 0.910865467 0.954643732 1.061848141 1.050294313 0.95406937 1.05321003 1.091048623 0.952574008 1 21.03373002 -5.128014549 5.52640107 1.026333301 0.937261518 0.403764196 0.044353505 0.20950865 8.507905569 0.011998855 0.021262748 7.45E-06 5.128014549 -0.089071783 SKDDQVTVIGAGVTLHEALAAAELLK ddPTM_HeLa_A485_30min_R1 2 SKDDQVTVIGAGVTLHEALAAAELLK 26 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 100.88 1.65E-05 43634400 42371.5 29647.2 21708.4 55856 34014.9 37323.8 56564 45605 28943.7 91001 FALSE FALSE TRUE 51796.894 33114.18214 29739.24052 58907.27185 30628.25712 39278.01645 44478.63931 34420.30224 34752.4351 68316.12545 0.758194257 0.484719851 0.435318021 0.862274777 0.448331297 0.574945025 0.651070871 0.503838618 0.508700323 1 16.05993853 -10.18983332 4.561991233 1.000083242 0.577725811 0.474813741 0.132219918 173632203 24.82420262 155103.0574 0.030791359 6.46E-11 10.18983332 -0.422357431 SKDDQVTVIGAGVTLHEALAAAELLK(ac)K ddPTM_HeLa_A485_30min_R1 1 SKDDQVTVIGAGVTLHEALAAAELLKK 27 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 1 SKDDQVTVIGAGVTLHEALAAAELLK(1)K 106.63 1.70E-07 27141000 51766 32776 30614 82647 66502 46583 85062 77992 42582 132180 FALSE TRUE FALSE 63281.16811 36608.86809 41939.39255 87161.79634 59880.82738 49022.01385 66887.80881 58864.33971 51127.81681 99229.95859 0.637722408 0.368929591 0.422648494 0.878381867 0.603455128 0.49402433 0.674068696 0.59321137 0.515245774 1 16.59848813 -10.82455719 2.607844788 1.147704068 0.576405365 0.469159817 0.135172612 23523476.98 16365830.4 21840094.63 0.037188354 1.50E-11 10.82455719 -0.571298704 SKDDQVTVIGAGVTLHEALAAAELLKK ddPTM_HeLa_A485_30min_R1 1 SKDDQVTVIGAGVTLHEALAAAELLKK 27 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 223.75 4.02E-44 16183000 21574 17463 9444.3 25522 18804 25742 42456 53778 14344 40099 FALSE FALSE TRUE 26373.06187 19505.14594 12938.13958 26916.20223 16931.80774 27089.81132 33384.92877 40588.86118 17222.70923 30103.05727 0.876092472 0.647945681 0.42979487 0.89413517 0.5624614 0.899902328 1.109021202 1.348330198 0.57212492 1 14.87762239 -6.473603513 4.612223187 1.034282364 0.679438568 0.329188391 0.219428314 0.230866904 10.6808895 0.079134096 0.067058715 3.36E-07 6.473603513 -0.354843796 SKDDQVTVIGAGVTLHEALAAAELLKK ddPTM_HeLa_A486_30min_R1 2 SKDDQVTVIGAGVTLHEALAAAELLKK 27 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 230.69 1.68E-51 29469700 38783 20854.5 11398.7 18912 33167.4 33562 41810 34072 21822.3 57236 FALSE FALSE TRUE 36064.51198 19201.91347 15812.58191 44028.09176 29007.23542 29421.46167 31348.69578 26314.54939 23713.87453 42903.73306 0.840591469 0.447558105 0.368559582 1.026206547 0.676100501 0.685755285 0.730675248 0.613339388 0.552722872 1 15.38881556 -11.04936563 2.654111566 1.462425755 0.658021225 0.247177153 0.177885904 53048987.92 29251487.65 148390300.2 0.045595322 8.93E-12 11.04936563 -0.80440453 SKDEEEDEES(ph)DDADDTPILKPVSLLR ddPTM_HeLa_A486_30min_R1 3 SKDEEEDEESDDADDTPILKPVSLLR 26 2 A0A3B3ITI3;A0A3B3IS53;A0A3F2YNX6;Q92794 A0A3B3ITI3 KAT6A Histone acetyltransferase KAT6A 1 0 SKDEEEDEES(1)DDADDTPILKPVSLLR;S(0.001)KDEEEDEES(0.999)DDADDTPILKPVSLLR;S(0.001)KDEEEDEES(0.999)DDADDTPILKPVSLLR ;; 162.08 5.59E-14 478408000 176338 160288 68333 103066 145177 197157 268557 227974 123223 317715 TRUE FALSE FALSE 163977.6168 147586.1951 94793.36762 239942.8567 126967.5469 172833.7739 201361.1981 176069.2968 133904.0689 238157.096 0.688527109 0.619701019 0.398028735 1.007498247 0.533125189 0.725713308 0.845497369 0.739298974 0.562251015 1 17.86155401 -14 0.177314789 2.22817364 0.617950234 0.253319178 0.161910454 189.8358929 1.81765413 82.66346518 0.518395296 1.00E-14 14 -1.610223406 SKDEYEKS(ph)R ddPTM_HeLa_A485_30min_R1 3 SKDEYEKSR 9 2 Q13247;Q13247-3;A0A590UJP7 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 SKDEYEKS(1)R;SKDEYEKS(1)R;SKDEYEKS(1)R ;; 77.644 0.0069319 630330000 1259330 568760 236946 1939580 395543 1622770 858210 1076210 677410 1526150 TRUE FALSE FALSE 1539463.614 635271.5344 324602.1855 2045534.344 356161.3501 1707735.728 674846.4226 812267.8101 813359.9734 1145708.892 1.343677809 0.554479012 0.28331995 1.785387509 0.310865485 1.490549423 0.589020848 0.708965267 0.709918531 1 20.12780909 SKDEYEKS(ph)RS(ph)R ddPTM_HeLa_A485_30min_R1 3 SKDEYEKSRSR 11 3 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 SKDEY(0.002)EKS(0.999)RS(0.999)R;SKDEY(0.005)EKS(0.996)RS(0.999)R;SKDEY(0.002)EKS(0.998)RS(1)R ;; 56.514 0.021645 1443523000 482517 366747 282102 1483720 553793 675172 1156630 1525700 623433 1948010 TRUE FALSE FALSE 589851.242 409634.8714 386463.269 1564771.867 498655.4244 710522.9619 909506.5517 1151519.683 748550.2846 1462406.957 0.403342749 0.28011004 0.264265201 1.069997553 0.340982667 0.485858576 0.621924388 0.78741398 0.511861818 1 20.47991341 -9.102936334 0.098799015 1.604452949 9.89E-14 0.354963873 0.220333689 41.66820692 1.249931417 13.55231316 6.523738726 7.89E-10 9.102936334 -1.604452949 SKDEYEKS(ph)RS(ph)R ddPTM_HeLa_A486_30min_R1 3 SKDEYEKSRSR 11 3 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 2 0 S(0.005)KDEY(0.061)EKS(0.96)RS(0.974)R;SKDEY(0.005)EKS(0.995)RS(1)R;SKDEY(0.013)EKS(0.991)RS(0.996)R ;; 56.514 0.021645 543874000 385307 193518 193217 451664 214325 810700 617897 477622 411694 898300 TRUE FALSE FALSE 358298.969 178182.9289 268035.7969 1051496.618 187442.36 710684.0766 463292.6352 368877.897 447379.9674 673359.833 0.53210624 0.264617698 0.3980573 1.561567183 0.278368787 1.055429863 0.688031291 0.547816901 0.664399546 1 19.36101814 -5.055665634 24.99971886 0.804465882 0.381598045 0.260769555 0.329632895 376.3252444 169008.9426 0.085602348 0.148268479 8.80E-06 5.055665634 -0.422867837 SKDHFGLEGDEESTMLEDSVS(ph)PK ddPTM_HeLa_A485_30min_R1 7 SKDHFGLEGDEESTMLEDSVSPK 23 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 SKDHFGLEGDEESTMLEDS(0.001)VS(0.999)PK;SKDHFGLEGDEESTMLEDS(0.062)VS(0.938)PK;SKDHFGLEGDEESTMLEDS(0.086)VS(0.914)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDS(0.007)VS(0.992)PK;SKDHFGLEGDEESTMLEDSVS(1)PK ;;;;;; 245.43 2.78E-49 4988640000 2817010 2283910 1426190 3574720 3523590 2822660 5215140 4905520 2310470 6020439 TRUE FALSE FALSE 3443644.156 2550993.407 1953797.03 3769997.902 3172769.008 2970450.113 4100882.735 3702433.528 2774160.136 4519654.355 0.761926441 0.564422234 0.432289037 0.834134119 0.701993727 0.657229487 0.907344326 0.819185105 0.61379918 1 22.10778101 -5.957105762 0.897854186 0.813985992 0.602243929 0.259108887 0.138736466 0.853543282 1.507237461 0.075900587 0.097637845 1.10E-06 5.957105762 -0.211742064 SKDHFGLEGDEESTMLEDSVS(ph)PK ddPTM_HeLa_A486_30min_R1 8 SKDHFGLEGDEESTMLEDSVSPK 23 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDS(0.012)VS(0.988)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDSVS(1)PK;SKDHFGLEGDEESTMLEDS(0.002)VS(0.998)PK ;;;;;;; 159.59 2.78E-11 10743110000 9183440 7545660 3454125 2210795 7147020 9888980 13785430 11893840 7051120 11875070 TRUE FALSE FALSE 8539728.279 6947714.421 4791654.705 5146842.487 6250574.108 8668978.191 10336169.61 9185872.273 7662316.759 8901475.178 0.959361017 0.780512699 0.538298946 0.578201072 0.702195308 0.973881072 1.161174906 1.031949434 0.860791791 1 23.08561301 -6.294370791 4.668833359 1.021232825 0.697280911 0.571236141 0.1271088 0.156575859 8.56144877 0.049007367 0.044305411 5.08E-07 6.294370791 -0.323951914 SKDHFGLEGDEESTMLEDSVS(ph)PKK ddPTM_HeLa_A485_30min_R1 2 SKDHFGLEGDEESTMLEDSVSPKK 24 2 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 SKDHFGLEGDEESTMLEDS(0.003)VS(0.997)PKK;SKDHFGLEGDEESTMLEDSVS(1)PKK ; 188.55 4.45E-21 1773420000 1460430 862120 517640 1995690 1649930 1443570 2935500 2736600 1083190 3652300 TRUE FALSE FALSE 1785297.615 962937.4346 709136.5768 2104709.491 1485657.176 1519153.093 2308306.444 2065444.559 1300576.297 2741848.826 0.651129121 0.351200046 0.258634455 0.767624193 0.541845036 0.55406158 0.841879546 0.753303588 0.474342818 1 21.3867176 -13.5524257 0.067749738 2.439503743 1.46E-08 0.402480299 0.167343698 295.3022896 1.564910868 69.54608359 10.59738463 2.80E-14 13.5524257 -2.439503728 SKDHFGLEGDEESTMLEDSVS(ph)PKK ddPTM_HeLa_A486_30min_R1 1 SKDHFGLEGDEESTMLEDSVSPKK 24 2 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 SKDHFGLEGDEESTMLEDS(0.002)VS(0.998)PKK 156.03 3.55E-10 176710000 206650 141170 75848 46797 166840 243710 324000 316370 158700 287180 TRUE FALSE FALSE 192164.9021 129983.1751 105218.3769 108945.781 145913.3715 213643.5381 242931.7731 244339.4573 172456.2438 215268.2588 0.892676437 0.603819512 0.488777944 0.506093103 0.677821116 0.992452577 1.128507168 1.135046377 0.801122491 1 17.71577608 -6.239642497 3.780276092 1.031744833 0.610540614 0.664334621 0.134299844 0.137437523 4.371708621 0.048983024 0.046602476 5.76E-07 6.239642497 -0.421204219 SKDIVLVAYSALGSHR ddPTM_HeLa_A485_30min_R1 3 SKDIVLVAYSALGSHR 16 1 P52895;B4DK69;Q04828;H0Y804 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;; ;; 205.31 1.68E-18 227732000 284147 339119 285180 226697 300483 319746 429189 430094 237268 381167 FALSE FALSE TRUE 347354.5199 378776.0171 390679.9493 239080.8831 270565.8575 336487.4061 337489.264 324612.7721 284885.5112 286149.0818 1.213893533 1.323701669 1.365302125 0.835511621 0.945541589 1.175916428 1.179417603 1.13441836 0.995584223 1 18.12640745 -5.236743537 24.99186496 1.051435957 1.303239393 0.556616074 0.10705886 662.8015598 670745.4997 0.031884304 0.055192884 5.80E-06 5.236743537 0.251803435 SKDIVLVAYSALGSHR ddPTM_HeLa_A486_30min_R1 3 SKDIVLVAYSALGSHR 16 1 P52895;B4DK69;Q04828;H0Y804 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;; ;; 208.2 9.30E-19 236391000 500720 391730 318230 98652 523010 445820 518420 412370 473150 559010 FALSE FALSE TRUE 465622.1137 360687.8881 441457.1785 229666.8416 457409.2089 390819.2612 388705.8327 318482.353 514163.023 419030.2575 1.111189718 0.860768123 1.053521006 0.548091307 1.091589929 0.932675515 0.927631897 0.760046195 1.227030778 1 18.6766949 -7.767526629 24.99993874 1.113515349 0.909027294 0.192197522 0.166298909 248.746574 1021536.784 0.138701503 0.039460041 1.71E-08 7.767526629 -0.204488055 SKDIVLVAYSALGSQR ddPTM_HeLa_A485_30min_R1 1 SKDIVLVAYSALGSQR 16 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 170.5 8.55E-11 23790000 52818 61085 47414 49591 66937 70912 94589 120080 46635 81463 FALSE FALSE TRUE 64567.18188 68228.35938 64954.41166 52300.03076 60272.51725 74624.84267 74379.28743 90630.19172 55994.21674 61155.77332 1.055782282 1.115648706 1.062114141 0.855193679 0.985557274 1.220241992 1.21622675 1.481956434 0.915599848 1 15.90020108 -6.26302186 24.91805654 1.200016147 1.014213595 0.17774878 0.155396688 198.2979375 3122411.899 0.052640984 0.048930784 5.46E-07 6.26302186 -0.185802552 SKDIVLVAYSALGSQR ddPTM_HeLa_A486_30min_R1 1 SKDIVLVAYSALGSQR 16 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 134.82 3.63E-06 27850000 40497 36912 33594 20899 48350 48931 57179 48651 45516 64951 FALSE FALSE TRUE 37658.36943 33986.95869 46602.49648 48653.92818 42285.49215 42894.39071 42872.20942 37574.22934 49461.36353 48686.84684 0.773481379 0.698072701 0.957188635 0.999323869 0.868519834 0.881026263 0.880570672 0.77175319 1.01590813 1 15.57124445 -4.759874912 24.99997695 0.911573778 0.735777 0.499532894 0.073909875 33.52082725 535610.8139 0.019182819 0.04553016 1.74E-05 4.759874912 -0.175796777 SKEFVS(ph)SDESSSGENK ddPTM_HeLa_A486_30min_R1 1 SKEFVSSDESSSGENK 16 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 S(0.002)KEFVS(0.888)S(0.11)DESSSGENK 174 7.13E-13 0 239920 198010 73812 146760 171990 286380 369390 339470 161590 448130 TRUE FALSE FALSE 223102.8469 182318.9665 102393.9832 341664.6968 150417.4105 251049.3473 276964.715 262180.0916 175596.7513 335915.3312 0.664163931 0.54275274 0.304820809 1.01711552 0.447783702 0.747359004 0.824507515 0.780494569 0.522741105 1 18.35773812 -14 0.083696677 2.079670587 0.344490825 0.236839683 0.193337983 341.4177928 2.00589598 67.88682735 5.687937946 1.00E-14 14 -1.735179762 SKEGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_HeLa_A485_30min_R1 11 SKEGHSLEMENENLVENGADSDEDDNSFLK 30 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;S(0.001)KEGHS(0.001)LEMENENLVENGADS(0.764)DEDDNS(0.234)FLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK ;;;;;;;;;; 458.92 1.45E-267 27898250000 4262618 3555178 2258162 3982496 5050086 4224704 7219487 6573530 3603017 7325117 TRUE FALSE FALSE 5210822.668 3970925.141 3093550.094 4200049.672 4547281.706 4445902.969 5676984.625 4961361.461 4326109.463 5499100.141 0.947577337 0.722104533 0.562555694 0.763770356 0.826913784 0.80847827 1.032347926 0.902213332 0.786694069 1 22.39076413 -6.22062188 1.784537212 0.917849166 0.737593585 0.323686412 0.109876319 0.43445578 2.73185503 0.046953732 0.04416012 6.02E-07 6.22062188 -0.180255581 SKEGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_HeLa_A486_30min_R1 10 SKEGHSLEMENENLVENGADSDEDDNSFLK 30 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(0.997)DEDDNS(0.003)FLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK;SKEGHSLEMENENLVENGADS(1)DEDDNSFLK ;;;;;;;;; 427.51 9.05E-225 23956980000 3529145 3219069 1625667.4 564883.5 3409870 3614033 4848094 4521187 2587980 3364599 TRUE FALSE FALSE 3281770.16 2963978.249 2255169.354 1315077.336 2982172.309 3168170.353 3635049.603 3491811.417 2812308.19 2522081.511 1.301214947 1.175211125 0.894169893 0.52142539 1.182425031 1.256172864 1.441289502 1.384495863 1.115074266 1 21.26618347 -5.984184636 24.97590927 1.269749023 0.965580959 0.238701001 0.223256532 327.7501717 517586.1559 0.073828535 0.083689201 1.04E-06 5.984184636 -0.304168064 SKEGHSLEMENENLVENGADS(ph)DEDDNSFLKQQS(ph)PQEPK ddPTM_HeLa_A486_30min_R1 1 SKEGHSLEMENENLVENGADSDEDDNSFLKQQSPQEPK 38 2 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 2 0 SKEGHSLEMENENLVENGADS(1)DEDDNSFLKQQS(1)PQEPK 291.18 3.19E-94 440750000 116570 49970 25197 22781 82167 71419 170580 187380 44849 136040 TRUE FALSE FALSE 108399.045 46010.19521 34953.9532 53035.31929 71860.84868 62608.04992 127899.0798 144717.6645 48736.54743 101974.6985 1.062999416 0.451192265 0.342770841 0.520083119 0.704692926 0.613956705 1.254223662 1.419152658 0.47792784 1 16.63785172 -6.745038473 23.62235979 1.072755325 0.595719042 0.335048451 0.28864952 130.7456868 188313.8731 0.110207634 0.085054932 1.80E-07 6.745038473 -0.477036283 SKEGHSLEMENENLVENGADS(ph)DEDDNSFLKQQSPQEPK ddPTM_HeLa_A485_30min_R1 1 SKEGHSLEMENENLVENGADSDEDDNSFLKQQSPQEPK 38 2 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SKEGHSLEMENENLVENGADS(0.5)DEDDNS(0.5)FLKQQSPQEPK 108.11 1.64E-05 188350000 18501 34034 10113 7014.1 32424 58564 94282 237000 22476 19756 TRUE FALSE FALSE 22616.48362 38013.98024 13854.21954 7397.262522 29195.75271 61630.32048 74137.88049 178875.3784 26986.72704 14831.19278 1.524926818 2.563110115 0.934127129 0.49876383 1.968537065 4.155452726 4.998780717 12.06075472 1.819592492 1 13.85634701 -6.428194336 2.315652052 5.854941257 1.424410955 0.235619739 2.85376107 0.358605581 3.789499803 1.139401612 0.942624067 3.73E-07 6.428194336 -4.430530303 SKELVSSSSSGSDS(ph)DSEVDKK ddPTM_HeLa_A486_30min_R1 1 SKELVSSSSSGSDSDSEVDKK 21 2 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 SKELVSSSSSGS(0.002)DS(0.997)DSEVDKK 136.88 2.12E-07 247310000 141500 90269 35852 114660 99584 148910 223200 225380 76367 321980 TRUE FALSE FALSE 131581.5807 83115.75569 49734.85455 266934.2746 87093.24614 130538.9982 167352.9992 174065.894 82986.55305 241354.1123 0.545180604 0.344372652 0.206065909 1.105986022 0.360852547 0.540860883 0.693391953 0.72120542 0.343837328 1 17.88079188 -14 0.157646448 2.588251771 0.425219656 0.231486889 0.245988071 203.1744608 1.853197222 101.9574794 1.088429898 1.00E-14 14 -2.163032115 SKENMAQESSIQEQGVTS(ph)NTSDSESSSK ddPTM_HeLa_A486_30min_R1 1 SKENMAQESSIQEQGVTSNTSDSESSSK 28 1 Q92796-2;Q92796-3 Q92796-2 DLG3 Disks large homolog 3 1 0 SKENMAQESSIQEQGVT(0.127)S(0.766)NT(0.054)S(0.054)DSESSSK 242.19 2.85E-50 227020000 307590 267840 114910 137070 247470 394110 416200 351400 279690 481230 TRUE FALSE FALSE 286029.5294 246615.3829 159406.2294 319105.8871 216430.005 345488.7152 312062.3579 271393.891 303933.7544 360726.8757 0.792925475 0.683662348 0.441902836 0.884619108 0.599983033 0.957757069 0.865093174 0.752352844 0.842559218 1 18.46054739 -6.259225723 24.98703424 0.866920808 0.678859038 0.392138812 0.125469143 230.6424688 2603424.331 0.042136021 0.040216818 5.51E-07 6.259225723 -0.18806177 SKESVPEFPLS(ph)PPK ddPTM_HeLa_A485_30min_R1 6 SKESVPEFPLSPPK 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK ;;;;; 137.45 3.51E-06 55677819000 9252930 6486580 4579691 16862360 9735460 8354200 14652910 11510540 7229104 22369060 TRUE FALSE FALSE 11311212.36 7245129.105 6273909.278 17783508.03 8766163.419 8791612.994 11522196.08 8687562.017 8679918.864 16792865.01 0.673572517 0.431440918 0.373605652 1.0589919 0.522017143 0.523532642 0.686136408 0.5173365 0.516881357 1 24.00134505 -10.20875447 4.514417336 1.000098924 0.588929596 0.316537408 0.181055185 40518717.26 91627768.2 27999.52999 0.043848903 6.18E-11 10.20875447 -0.411169328 SKESVPEFPLS(ph)PPK ddPTM_HeLa_A486_30min_R1 6 SKESVPEFPLSPPK 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK ;;;;; 150.68 2.65E-08 67129960000 16305720 12655260 4889950 9245400 9312900 15636540 20832510 18031250 10139390 28462000 TRUE FALSE FALSE 15162773.23 11652411.11 6783469.597 21523758.44 8144789.243 13707462.68 15619995.65 13925927.99 11018280.49 21334929.94 0.710701805 0.546165895 0.317951342 1.008850673 0.381758425 0.642489228 0.732132503 0.652729024 0.516443247 1 24.34671404 -11.11161659 2.317158875 1.70383547 0.612051278 0.28649603 0.183628347 30797412.14 8350122.829 114138042.8 0.043818686 7.73E-12 11.11161659 -1.091784192 SKESVPEFPLS(ph)PPKK ddPTM_HeLa_A485_30min_R1 1 SKESVPEFPLSPPKK 15 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPKK 66.325 0.0061939 216580000 258610 135800 87972 488790 235740 206030 382600 292000 162950 587390 TRUE FALSE FALSE 316136.9023 151680.6287 120516.5036 515491.36 212268.8979 216817.4122 300854.3844 220386.5422 195652.5703 440964.4831 0.716921463 0.343974707 0.273302065 1.169008797 0.481374138 0.49168906 0.682264436 0.499782977 0.443692356 1 18.75030293 -10.47294599 5.737336969 1.000410679 0.56610077 0.229460172 0.238098218 0.001250097 0.000114839 0.230417194 0.055833191 3.37E-11 10.47294599 -0.434309909 SKESVPEFPLS(ph)PPKK ddPTM_HeLa_A486_30min_R1 1 SKESVPEFPLSPPKK 15 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPKK 89.028 0.00056495 304790000 390750 314690 119050 232700 233380 424010 596850 482450 258670 750840 TRUE FALSE FALSE 363360.4428 289752.8183 165149.3483 541737.36 204107.3042 371699.9572 447511.8172 372606.6668 281091.7239 562824.7769 0.645601363 0.514818875 0.293429421 0.962532892 0.362648044 0.660418611 0.795117478 0.662029609 0.499430259 1 19.10232632 -14 0.18970221 2.685333314 0.529500158 0.29086597 0.186613517 174.4178775 1.704929068 111.2977031 0.500694874 1.00E-14 14 -2.155833156 SKESVPEFPLS(ph)PPKKK ddPTM_HeLa_A485_30min_R1 3 SKESVPEFPLSPPKKK 16 3 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPKKK;SKESVPEFPLS(1)PPKKK;SKESVPEFPLS(1)PPKKK ;; 100.28 0.00048313 24635700000 1289883 1063306 416396 1676450 1671470 1969250 3816640 4868430 890494 2384670 TRUE FALSE FALSE 1576813.023 1187650.387 570438.2081 1768030.219 1505052.578 2072356.885 3001183.685 3674439.909 1069207.978 1790215.656 0.880795014 0.66341191 0.318642174 0.987607394 0.840710209 1.157601811 1.676436956 2.052512443 0.597250937 1 20.77170196 -6.230127901 1.941178826 1.414740712 0.683646448 0.327370165 0.398980245 0.352004538 2.609085975 0.159754 0.149673107 5.89E-07 6.230127901 -0.731094264 SKESVPEFPLS(ph)PPKKK ddPTM_HeLa_A486_30min_R1 2 SKESVPEFPLSPPKKK 16 3 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPKKK;SKESVPEFPLS(1)PPKKK ; 116.39 0.00065869 18996600000 5746600 3085750 1142650 3729730 4021960 4745500 8768700 8375200 2278850 9812800 TRUE FALSE FALSE 5343793.015 2841223.932 1585114.681 8682999.93 3517488.274 4160048.459 6574678.514 6468349.789 2476382.553 7355611.009 0.726492063 0.386266203 0.21549735 1.180459369 0.47820477 0.565561237 0.89383173 0.879376272 0.336665785 1 22.81041376 -14 0.054422048 2.260430782 0.03889365 0.120593854 0.283252011 1009.514065 4.033111044 181.5643428 35.57332775 1.00E-14 14 -2.221537132 SKETSSPGTDDVFTPAPSDS(ph)PSSQR ddPTM_HeLa_A485_30min_R1 1 SKETSSPGTDDVFTPAPSDSPSSQR 25 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 0 SKETSSPGTDDVFT(0.004)PAPS(0.007)DS(0.852)PS(0.106)S(0.032)QR 156.4 5.60E-10 555500000 579550 595030 274270 599400 308040 656830 756440 796860 483020 1302300 TRUE FALSE FALSE 708468.8981 664613.5824 375733.8863 632143.7042 277370.456 691220.6031 594820.4145 601428.8356 579957.6835 977660.5771 0.724657325 0.67979992 0.384319359 0.646588109 0.283708337 0.707014908 0.608411987 0.61517141 0.593209645 1 19.89897415 -9.512008708 0.590534789 1.057094737 0.566003495 0.468217037 0.133777587 9.903121536 2.773447165 1.327735942 0.055415509 3.08E-10 9.512008708 -0.491091242 SKETSSPGTDDVFTPAPSDS(ph)PSSQR ddPTM_HeLa_A486_30min_R1 1 SKETSSPGTDDVFTPAPSDSPSSQR 25 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 0 SKETSSPGTDDVFTPAPS(0.002)DS(0.933)PS(0.052)S(0.013)QR 134.21 1.65E-06 540270000 177620 153160 109890 47043 223060 203690 174840 161490 197560 302170 TRUE FALSE FALSE 165169.7552 141023.0438 152442.351 109518.4814 195081.7348 178560.7988 131093.1827 124722.2523 214684.6599 226504.6652 0.729211273 0.622605471 0.6730208 0.483515345 0.861270273 0.78833166 0.578765928 0.550638779 0.947815621 1 17.78918124 -7.844111277 6.394576062 0.990290404 0.662717495 0.579682476 0.106753475 0.160273845 9.617494623 0.105929535 0.027594099 1.43E-08 7.844111277 -0.32757291 SKEYFSK ddPTM_HeLa_A485_30min_R1 4 SKEYFSK 7 1 Q06830;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 105.52 0.007415 2015953000 1460520 1623480 1116820 1501770 1851530 1739080 2357530 2710080 1355050 2042510 FALSE FALSE TRUE 1785407.635 1813331.864 1529978.193 1583807.892 1667185.172 1830135.54 1853824.456 2045428.631 1626996.106 1533349.847 1.164383744 1.182595001 0.997801119 1.032907067 1.087282968 1.193553802 1.209002929 1.333960828 1.06107299 1 20.54825547 -6.258348861 23.89898935 1.183483462 1.089345156 0.076605369 0.098966026 272.9728615 2110901.744 0.033453672 0.03206468 5.52E-07 6.258348861 -0.094138306 SKEYFSK ddPTM_HeLa_A486_30min_R1 2 SKEYFSK 7 1 Q06830;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 105.52 0.0044246 1479950000 2390700 2033280 1239490 891080 2903100 2170270 2742600 2716000 1726630 2767300 FALSE FALSE TRUE 2223124.276 1872155.488 1719453.723 2074479.273 2538966.128 1902524.153 2056372.472 2097626.09 1876295.679 2074350.068 1.071720878 0.902526298 0.828912029 1.000062287 1.22398151 0.917166385 0.991333384 1.011220875 0.904522196 1 20.98422795 -5.49310536 24.84177426 1.013110794 0.928414836 0.100270632 0.098600527 1375.666355 1147802.9 0.02845664 0.042130053 3.21E-06 5.49310536 -0.084695958 SKFALITWIGENVSGLQR ddPTM_HeLa_A485_30min_R1 1 SKFALITWIGENVSGLQR 18 1 H3BT58;Q14019 H3BT58 COTL1 Coactosin-like protein 0 0 166.25 1.89E-14 12679000 18187 31949 20910 14069 34016 27421 42683 67979 16208 24978 FALSE FALSE TRUE 22232.63541 35685.15763 28645.47914 14837.55385 30629.2476 28856.72116 33563.42836 51307.04366 19460.79693 18751.44429 1.185649226 1.903061817 1.527641215 0.791275254 1.633434051 1.538906589 1.789911638 2.736164899 1.037829227 1 14.1947141 -6.426655763 2.426553761 1.773431072 1.404490136 0.017293192 0.529898129 0.791507188 9.16248242 0.21308099 0.177033409 3.74E-07 6.426655763 -0.368940936 SKFDS(ph)DEEEEDTENVEAASSGK ddPTM_HeLa_A485_30min_R1 4 SKFDSDEEEEDTENVEAASSGK 22 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.026)KFDS(0.974)DEEEEDTENVEAASSGK;S(0.294)KFDS(0.706)DEEEEDTENVEAASSGK;S(0.368)KFDS(0.632)DEEEEDTENVEAASSGK;S(0.037)KFDS(0.963)DEEEEDTENVEAASSGK ;;; 255.84 1.96E-59 3795680000 1719620 1050330 639060 2413200 1505350 1254890 2375240 2068830 996120 3051370 TRUE FALSE FALSE 2102143.536 1173156.957 875474.8875 2545027.005 1355472.068 1320594.1 1867750.57 1561446.199 1196032.147 2290719.615 0.917678236 0.51213468 0.382183346 1.111016376 0.591723256 0.576497486 0.815355383 0.681640035 0.522120708 1 21.12736945 -10.07279032 4.468468714 1.000021979 0.67651762 0.180519857 0.205167422 135592911.7 1.254607355 32452.93449 0.04865 8.46E-11 10.07279032 -0.323504359 SKFDS(ph)DEEEEDTENVEAASSGK ddPTM_HeLa_A486_30min_R1 3 SKFDSDEEEEDTENVEAASSGK 22 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.014)KFDS(0.986)DEEEEDTENVEAASSGK;S(0.039)KFDS(0.961)DEEEEDTENVEAASSGK;S(0.012)KFDS(0.988)DEEEEDTENVEAASSGK ;; 326.55 9.04E-115 2842740000 2546320 2021980 695160 1197550 1490730 2508280 3208200 2757990 1363630 3823280 TRUE FALSE FALSE 2367836.117 1861750.941 964344.569 2787956.921 1303748.743 2198833.916 2405474.427 2130055.883 1481830.546 2865905.803 0.826208634 0.649620423 0.336488578 0.972801311 0.454916816 0.767238726 0.839341762 0.743240019 0.517054868 1 21.45055976 SKFS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 SKFSPQK 7 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 S(0.016)KFS(0.984)PQK;S(0.034)KFS(0.966)PQK ; 70.552 0.010033 387040000 1378320 975400 621140 1968930 1313770 1226450 1873970 1481410 1045680 2578100 TRUE FALSE FALSE 1684922.529 1089464.545 850925.5338 2076487.66 1182966.446 1290665.026 1473581.001 1118091.875 1255538.384 1935427.116 0.870568834 0.562906521 0.439657751 1.072883418 0.611217253 0.666863151 0.761372509 0.577697742 0.648713854 1 20.88422055 -10.01531345 4.999058088 1.00000375 0.686124749 0.232687349 0.168621161 6.90E-06 1.36E-06 0.159747486 0.038743993 9.65E-11 10.01531345 -0.313879002 SKFS(ph)PQK ddPTM_HeLa_A486_30min_R1 1 SKFSPQK 7 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 S(0.103)KFS(0.897)PQK 57.267 0.020534 203180000 846500 709200 274900 393090 559010 905170 1055400 955410 623120 1248400 TRUE FALSE FALSE 787164.7213 653000.4091 381348.6421 915133.3857 488893.7532 793499.3285 791327.7571 737883.9995 677132.5433 935792.5143 0.841174416 0.697804694 0.407514098 0.977923388 0.522438196 0.847943659 0.84562309 0.788512398 0.723592605 1 19.83582916 SKFSFLAS(ph)DTEEEEENSSMVLGAR ddPTM_HeLa_A485_30min_R1 1 SKFSFLASDTEEEEENSSMVLGAR 24 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 0 S(0.277)KFS(0.277)FLAS(0.442)DT(0.004)EEEEENSSMVLGAR 97.771 0.00072361 59825000 14981 20491 12915 24549 29686 23505 33576 51243 15267 26971 TRUE FALSE FALSE 18313.47177 22887.2442 17692.79594 25890.04971 26730.35761 24735.68545 26402.21331 38675.5739 18330.94686 20247.62606 0.904475009 1.130366796 0.873820757 1.278670874 1.320172425 1.221658548 1.303965869 1.910128811 0.905338078 1 14.30546515 -5.347711322 5.882074345 1.318334846 0.986682643 0.217240774 0.259350378 0.312250715 16.91119407 0.071292723 0.106809745 4.49E-06 5.347711322 -0.331652203 SKFSFLAS(ph)DTEEEEENSSMVLGAR ddPTM_HeLa_A486_30min_R1 1 SKFSFLASDTEEEEENSSMVLGAR 24 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 0 S(0.037)KFS(0.037)FLAS(0.888)DT(0.037)EEEEENSSMVLGAR 63.901 0.0078429 38942000 23387 18931 13498 13794 28807 20569 31696 31110 17729 30653 TRUE FALSE FALSE 21747.69207 17430.83861 18724.78709 32113.12911 25193.75745 18031.40591 23765.32555 24026.93213 19265.76399 22977.28928 0.946486411 0.758611619 0.814925854 1.397603029 1.096463431 0.784749049 1.034296312 1.045681753 0.838469837 1 14.48792099 SKGDSDPKPGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SKGDSDPKPGSPK 13 2 Q9BVI0 Q9BVI0 PHF20 PHD finger protein 20 1 0 SKGDSDPKPGS(1)PK;SKGDSDPKPGS(1)PK ; 75.383 0.003551 1047780000 928990 606500 276890 2073930 713640 845310 1566540 1826460 634390 2656200 TRUE FALSE FALSE 1135640.621 677424.8992 379323.1334 2187223.544 642587.4959 889569.1245 1231835.932 1378517.821 761706.254 1994058.224 0.569512267 0.339721725 0.190226709 1.096870452 0.32225112 0.446109905 0.617753242 0.691312723 0.381987971 1 20.9272761 -14 0.23315382 3.604843469 0.468572064 0.260586795 0.241478975 230.6953382 2.30836508 284.267951 0.405385833 1.00E-14 14 -3.136271405 SKGGVVGIKVDK ddPTM_HeLa_A485_30min_R1 2 SKGGVVGIKVDK 12 2 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 88.768 0.01015 93000000 172518 211575 100772 137512 257680 283600 492360 661370 172903 308600 FALSE FALSE TRUE 210894.0339 236316.8558 138051.7563 145023.9324 232024.4744 298448.8575 387163.2638 499167.9705 207603.0461 231671.6994 0.910314184 1.020050599 0.595893916 0.625988987 1.001522737 1.288240464 1.671172029 2.15463508 0.89610879 1 17.82172229 -6.278924155 2.490727175 1.519311811 0.795820665 0.396465245 0.352061654 0.265046453 3.247647849 0.133898163 0.12241932 5.26E-07 6.278924155 -0.723491146 SKGHYEVTGS(ph)DDETGK ddPTM_HeLa_A485_30min_R1 6 SKGHYEVTGSDDETGK 16 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SKGHYEVTGS(1)DDETGK;SKGHYEVT(0.001)GS(0.999)DDETGK;SKGHYEVT(0.013)GS(0.901)DDET(0.087)GK;SKGHYEVT(0.045)GS(0.951)DDET(0.004)GK;SKGHYEVT(0.011)GS(0.989)DDETGK;SKGHYEVTGS(1)DDETGK ;;;;; 219.22 5.51E-34 10332400000 8194100 5580900 3583850 7508100 7505340 6380930 10375590 7760360 5961630 13824470 TRUE FALSE FALSE 10016849.28 6233537.708 4909665.251 7918248.491 6758081.997 6715025.628 8158760.436 5857119.542 7158074.458 10378284.05 0.965173937 0.60063279 0.473071004 0.762963169 0.651175278 0.647026579 0.786137708 0.564363002 0.689716568 1 23.30706459 -10.66950964 2.395326293 1.052709263 0.673710272 0.354050983 0.128291224 6893081.743 5217596.505 2213516.867 0.032622046 2.14E-11 10.66950964 -0.378998991 SKGHYEVTGS(ph)DDETGK ddPTM_HeLa_A486_30min_R1 6 SKGHYEVTGSDDETGK 16 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SKGHYEVTGS(1)DDETGK;SKGHYEVT(0.001)GS(0.999)DDETGK;SKGHYEVT(0.024)GS(0.976)DDETGK;SKGHYEVT(0.012)GS(0.987)DDET(0.001)GK;SKGHYEVT(0.019)GS(0.981)DDETGK;SKGHYEVT(0.006)GS(0.994)DDETGK ;;;;; 226.71 2.93E-34 11487970000 5732530 5470900 2268863 510994 4441590 6211490 7545610 6392660 4824430 5304820 TRUE FALSE FALSE 5330709.25 5037365.959 3147427.516 1189619.856 3884484.366 5445179.518 5657618.569 4937190.869 5242615.477 3976458.543 1.340567038 1.266797052 0.791515234 0.299165663 0.976870329 1.369354026 1.42277821 1.241605015 1.318413211 1 21.9230527 -6.189479374 5.82498338 1.294481015 0.906259802 0.253490291 0.285485477 0.326449821 20.20125877 0.104991244 0.104684655 6.46E-07 6.189479374 -0.388221213 SKGHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_HeLa_A485_30min_R1 3 SKGHYEVTGSDDETGKLQGSGVSLASK 27 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.001)KGHYEVT(0.014)GS(0.985)DDETGKLQGSGVSLASK;SKGHYEVT(0.001)GS(0.999)DDETGKLQGSGVSLASK;SKGHYEVT(0.001)GS(0.995)DDET(0.004)GKLQGS(0.001)GVSLASK ;; 189.43 8.70E-21 14276900000 2290800 1982490 954047 1908530 2579000 2618810 4314970 4491370 1812859 4054900 TRUE FALSE FALSE 2800380.557 2214324.96 1306988.687 2012788.161 2322225.705 2755926.842 3393041.409 3389854.465 2176683.173 3044088.055 0.91994072 0.727418169 0.429353114 0.6612122 0.762864169 0.905337425 1.114633134 1.113586205 0.715052631 1 21.53757866 -6.241389013 2.523689741 0.995345001 0.673204079 0.445420691 0.15281954 0.269169428 3.388835919 0.060096831 0.05636722 5.74E-07 6.241389013 -0.322140922 SKGHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_HeLa_A486_30min_R1 1 SKGHYEVTGSDDETGKLQGSGVSLASK 27 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SKGHYEVTGS(1)DDETGKLQGSGVSLASK 205.61 8.40E-29 7792200000 2267100 1688200 688960 196810 1749400 2122100 2798000 2614300 1420100 2019500 TRUE FALSE FALSE 2108187.997 1554420.884 955743.763 458183.6262 1529973.939 1860296.878 2097910.806 2019080.96 1543195.411 1513804.055 1.392642588 1.026830968 0.63135236 0.302670365 1.010681623 1.228888819 1.385853604 1.333779595 1.019415562 1 20.52974705 -6.000673221 24.99994579 1.214612062 0.814501525 0.256177252 0.283325614 34.13123733 1267545.486 0.095876347 0.107459439 9.98E-07 6.000673221 -0.400110537 SKGHYEVTGS(ph)DDETGKLQGSGVSLASKK ddPTM_HeLa_A485_30min_R1 2 SKGHYEVTGSDDETGKLQGSGVSLASKK 28 3 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SKGHYEVT(0.002)GS(0.998)DDETGKLQGSGVSLASKK;SKGHYEVT(0.004)GS(0.996)DDET(0.001)GKLQGSGVSLASKK ; 248.21 9.78E-51 5372460000 1251180 1397250 449820 693250 1667350 2244910 3894100 5932100 1009430 1859510 TRUE FALSE FALSE 1529500.674 1560646.233 616227.1366 731120.4921 1501342.78 2362450.016 3062093.723 4477243.174 1212013.342 1395968.379 1.095655674 1.117966751 0.441433449 0.523737144 1.075484805 1.692337772 2.193526565 3.207266899 0.868224066 1 20.41283483 -6.27077422 2.737088213 1.992262406 0.79567727 0.337912772 0.647215935 0.275879517 4.127299284 0.239675692 0.220890265 5.36E-07 6.27077422 -1.196585136 SKGHYEVTGS(ph)DDETGKLQGSGVSLASKK ddPTM_HeLa_A486_30min_R1 2 SKGHYEVTGSDDETGKLQGSGVSLASKK 28 3 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SKGHYEVT(0.002)GS(0.998)DDETGKLQGSGVSLASKK;SKGHYEVT(0.138)GS(0.862)DDETGKLQGSGVSLASKK ; 163.48 8.12E-14 3851800000 4598300 2025670 861160 367489 2822240 2284080 4391900 4113100 1494620 3589680 TRUE FALSE FALSE 4275982.916 1865148.532 1194624.215 855532.9639 2468248.343 2002293.432 3293000.167 3176636.918 1624174.865 2690800.763 1.589111678 0.693157426 0.443966061 0.317947347 0.917291379 0.744125489 1.223799329 1.180554488 0.603602796 1 21.35960414 -6.72638889 24.26707858 1.017035372 0.749507021 0.077530291 0.35448518 307.4175035 212838.5734 0.140260897 0.108639805 1.88E-07 6.72638889 -0.267528351 SKGIAY(ph)VEFVDVSSVPLAIGLTGQR ddPTM_HeLa_A485_30min_R1 1 SKGIAYVEFVDVSSVPLAIGLTGQR 25 1 G3XAC6;Q14498-2;Q14498;Q5QP23;H0Y4X3;A0A0U1RQH7;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 S(0.491)KGIAY(0.509)VEFVDVSSVPLAIGLTGQR 73.322 0.0065459 51636000 50984 48786 40375 72689 71406 72209 99090 114180 51465 101370 TRUE FALSE FALSE 62325.21491 54491.09832 55311.39264 76659.81601 64296.56792 75989.75158 77918.61201 86177.17597 61793.55344 76100.32458 0.818987504 0.716042916 0.726822033 1.007352024 0.844892164 0.99854701 1.023893294 1.132415354 0.812001181 1 16.21561499 -5.260423805 24.98892405 0.977377125 0.750160017 0.561585112 0.089110266 64.71158901 1592256.903 0.024615372 0.039715038 5.49E-06 5.260423805 -0.227217108 SKGQESFK(ac)K ddPTM_HeLa_A485_30min_R1 2 SKGQESFKK 9 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 0 1 ; SKGQESFK(1)K;SKGQESFK(1)K 138.99 0.0014898 117861000 140418 163785 101966 147709 200553 219720 330910 421060 231130 351220 FALSE TRUE FALSE 171653.4997 182938.231 139687.4666 155777.9687 180585.2391 231224.1994 260208.3752 317794.3748 277515.671 263667.3177 0.651023044 0.693822172 0.529786808 0.590812582 0.684898078 0.876954343 0.986881414 1.205285424 1.05252207 1 18.00835923 -6.500439087 1.639443538 1.094204346 0.615466361 0.906318953 0.06599869 0.103353736 0.559832691 0.032429615 0.024569906 3.16E-07 6.500439087 -0.478737985 SKGQESFK(ac)K ddPTM_HeLa_A486_30min_R1 2 SKGQESFKK 9 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 0 1 ; SKGQESFK(1)K;SKGQESFK(1)K 145.91 0.00090639 151285000 306720 266010 138920 109137 256440 293890 355310 360580 218760 405230 FALSE TRUE FALSE 285220.5119 244930.3988 192713.5444 254076.4515 224274.904 257632.8399 266407.6799 278483.8054 237722.2929 303757.7704 0.93897355 0.806334595 0.634431653 0.836444286 0.738334706 0.848152261 0.877039885 0.916795659 0.782604812 1 18.21256179 -6.501200501 3.981556417 0.885711626 0.785529939 0.232893162 0.087463029 0.349783351 12.42596153 0.033435598 0.027418091 3.15E-07 6.501200501 -0.100181688 SKHDSSAPDPAPDS(ph)ADEVMPEAVPEVASEPGLESASHPNVDR ddPTM_HeLa_A485_30min_R1 2 SKHDSSAPDPAPDSADEVMPEAVPEVASEPGLESASHPNVDR 42 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 SKHDSSAPDPAPDS(0.999)ADEVMPEAVPEVASEPGLESASHPNVDR;S(0.026)KHDS(0.026)S(0.026)APDPAPDS(0.922)ADEVMPEAVPEVASEPGLESASHPNVDR ; 144.67 4.67E-11 476460000 73334 221143 207514 17368.7 230303 144182 126450 148487 173799 54932.5 TRUE FALSE FALSE 89646.8953 247003.7502 284282.064 18317.5081 207373.2247 151731.1466 99432.9245 112070.3304 208678.8651 41238.83871 2.17384626 5.989590345 6.893551634 0.444180988 5.028590309 3.679326366 2.41114754 2.717591813 5.060250765 1 15.33171609 -9.173977022 0.202815024 2.80E-12 4.771839459 0.15499685 1.875926714 20.88744198 1.441785923 25.44917105 6.265456705 6.70E-10 9.173977022 4.771839459 SKHDSSAPDPAPDS(ph)ADEVMPEAVPEVASEPGLESASHPNVDR ddPTM_HeLa_A486_30min_R1 1 SKHDSSAPDPAPDSADEVMPEAVPEVASEPGLESASHPNVDR 42 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 SKHDSSAPDPAPDS(1)ADEVMPEAVPEVASEPGLESASHPNVDR 107.09 9.84E-07 141970000 72832 75126 65784 13406 79198 51387 62080 61502 71407 40902 TRUE FALSE FALSE 67726.8529 69172.74216 91257.32656 31209.8455 69264.24835 45047.3944 46546.92738 47499.33718 77596.61625 30659.87297 2.208973696 2.256132705 2.976441769 1.017937861 2.259117264 1.469262265 1.518170914 1.549234637 2.530885119 1 14.9040641 -5.256032795 24.99972204 1.659567054 2.458077694 0.390421913 0.490437642 483.2509626 2234516.448 0.128462724 0.214550725 5.55E-06 5.256032795 0.79851064 SKHEEEEWT(ph)DDDLVES(ph)L ddPTM_HeLa_A485_30min_R1 1 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 2 0 S(0.001)KHEEEEWT(0.999)DDDLVES(1)L 113.26 0.00011019 111620000 103330 129190 83540 102240 128350 112660 185160 186260 122380 161920 TRUE FALSE FALSE 126315.402 144297.6467 114444.9224 107825.1123 115571.0233 118558.7034 145599.0534 140579.443 146940.5435 121556.3239 1.039151218 1.187084654 0.941497067 0.887038279 0.950761093 0.975339658 1.197790857 1.156496334 1.208826812 1 16.89126543 -6.756243356 24.99868786 1.15381987 0.995863484 0.367808429 0.091826139 139.1964421 669695.1416 0.038252581 0.028717094 1.75E-07 6.756243356 -0.157956386 SKHEEEEWT(ph)DDDLVES(ph)L ddPTM_HeLa_A486_30min_R1 2 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 2 0 S(0.004)KHEEEEWT(0.996)DDDLVES(1)L;S(0.003)KHEEEEWT(0.997)DDDLVES(1)L ; 107.47 0.00016503 318330000 245185 257352 157801 117188 269460 278800 349260 361260 198556 275480 TRUE FALSE FALSE 227998.7976 236958.4903 218905.7733 272819.5864 235661.8142 244404.4906 261871.4539 279008.9843 215766.9939 206498.0149 1.104121014 1.147509773 1.060086574 1.321172925 1.14123041 1.183568233 1.268154825 1.351146084 1.044886528 1 17.65576839 -5.228650897 24.99564822 1.203107405 1.10826619 0.100025419 0.10698674 1282.882796 977979.1301 0.027724824 0.048017966 5.91E-06 5.228650897 -0.094841216 SKHEEEEWT(ph)DDDLVESL ddPTM_HeLa_A485_30min_R1 7 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 0 S(0.014)KHEEEEWT(0.986)DDDLVESL;S(0.093)KHEEEEWT(0.907)DDDLVESL;S(0.001)KHEEEEWT(0.999)DDDLVESL;S(0.001)KHEEEEWT(0.999)DDDLVESL;S(0.038)KHEEEEWT(0.962)DDDLVESL;SKHEEEEWT(1)DDDLVESL;S(0.014)KHEEEEWT(0.986)DDDLVESL ;;;;;; 174.2 2.42E-12 4429840000 2203182 2477600 2035725 1842633.1 3187512 2583683 3518827 3997744 2317687 2886428.8 TRUE FALSE FALSE 2693272.235 2767333.768 2788824.391 1943291.48 2870152.113 2718960.647 2767000.865 3017291.016 2782825.522 2166895.221 1.242917613 1.277096253 1.287013956 0.896809159 1.324545869 1.254772552 1.276942622 1.392448969 1.284245539 1 21.04719796 SKHEEEEWT(ph)DDDLVESL ddPTM_HeLa_A486_30min_R1 7 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 0 SKHEEEEWT(1)DDDLVESL;S(0.003)KHEEEEWT(0.997)DDDLVESL;S(0.118)KHEEEEWT(0.882)DDDLVESL;S(0.083)KHEEEEWT(0.917)DDDLVESL;S(0.001)KHEEEEWT(0.999)DDDLVESL;S(0.005)KHEEEEWT(0.995)DDDLVESL;S(0.021)KHEEEEWT(0.979)DDDLVESL ;;;;;; 187.07 1.07E-17 6743250000 4430928 4593275 3144168 495550.3 5045911 4404990 5415639 5121646 3903553 3759458 TRUE FALSE FALSE 4120342.829 4229287.161 4361674.053 1153666.142 4413005.791 3861547.12 4060588.841 3955559.011 4241916.117 2818065.247 1.462117612 1.500776877 1.547754814 0.409382339 1.565970056 1.370283078 1.440913707 1.403643516 1.505258305 1 21.42627358 SKKDDINLLPSKS(ph)SVTK ddPTM_HeLa_A486_30min_R1 1 SKKDDINLLPSKSSVTK 17 3 Q9ULW0 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SKKDDINLLPS(0.119)KS(0.428)S(0.428)VT(0.025)K 83.245 0.0021805 315310000 388190 222340 84916 196490 207480 370070 536310 476970 187880 658950 TRUE FALSE FALSE 360979.8856 204720.9687 117797.7493 457438.6501 181455.9237 324414.526 402119.5655 368374.3432 204165.5897 493944.631 0.730810425 0.41446137 0.238483712 0.92609297 0.367360859 0.656783181 0.814098464 0.74578064 0.413336995 1 18.91398981 -14 0.142662642 2.396903813 0.451791576 0.244967126 0.212559937 192.7632154 1.669218175 76.72746823 1.233330112 1.00E-14 14 -1.945112237 SKLNLAQFLNEDLS(ph) ddPTM_HeLa_A485_30min_R1 2 SKLNLAQFLNEDLS 14 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 SKLNLAQFLNEDLS(1);SKLNLAQFLNEDLS(1) ; 154.07 4.65E-07 719420000 1416440 1815430 1390260 1394560 2207420 1945780 2612240 3161020 1596930 2086700 TRUE FALSE FALSE 1731522.191 2027728.746 1904575.028 1470741.282 1987641.514 2047658.032 2054113.584 2385774.889 1917419.203 1566524.093 1.10532752 1.294412742 1.215796831 0.938856471 1.268822818 1.30713472 1.31125566 1.522973633 1.223995987 1 20.57913553 -5.979598566 24.99986821 1.305903775 1.148816826 0.144983304 0.148018461 390.0981171 478022.9527 0.045200373 0.051246828 1.05E-06 5.979598566 -0.157086949 SKLNLAQFLNEDLS(ph) ddPTM_HeLa_A486_30min_R1 1 SKLNLAQFLNEDLS 14 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 SKLNLAQFLNEDLS(1) 110.77 0.0035585 355150000 995410 848750 612390 342840 895330 769740 1023900 990300 688560 967450 TRUE FALSE FALSE 925636.8993 781491.9589 849523.8084 798148.8462 783029.3628 674777.3049 767709.3903 764830.3081 748244.9352 725194.223 1.276398612 1.077631253 1.171443155 1.100600116 1.079751242 0.930478048 1.058625905 1.05465582 1.031785571 1 19.46800791 -1 0.384017808 1.015010066 4.453753784 0.661712868 0.051862591 44.14859782 0.600569758 0.040100028 113.3425173 0.1 1 3.438743718 SKLPDGPT(ph)GSSEEEEEFLEIPPFNK ddPTM_HeLa_A485_30min_R1 2 SKLPDGPTGSSEEEEEFLEIPPFNK 25 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.009)KLPDGPT(0.33)GS(0.33)S(0.33)EEEEEFLEIPPFNK;S(0.005)KLPDGPT(0.332)GS(0.332)S(0.332)EEEEEFLEIPPFNK ; 110.9 0.00039052 308780000 275509 249751 164315 352600 349300 335140 537980 495950 264540 534900 TRUE FALSE FALSE 336795.0266 278957.2069 225101.9562 371861.6452 314522.4655 352687.4122 423036.1781 374317.4849 317630.7515 401559.2741 0.838718088 0.694685006 0.560569686 0.926044221 0.783252899 0.878294775 1.05348377 0.93215998 0.79099344 1 18.61525343 -5.768003787 1.350093961 0.931801555 0.709880022 0.412054575 0.106529831 0.422095308 1.610923733 0.042452577 0.059438816 1.71E-06 5.768003787 -0.221921533 SKLPDGPT(ph)GSSEEEEEFLEIPPFNK ddPTM_HeLa_A486_30min_R1 2 SKLPDGPTGSSEEEEEFLEIPPFNK 25 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.002)KLPDGPT(0.333)GS(0.333)S(0.333)EEEEEFLEIPPFNK;S(0.001)KLPDGPT(0.333)GS(0.333)S(0.333)EEEEEFLEIPPFNK ; 117.88 0.00016973 354540000 248680 213319 109153 116834 200287 270190 332660 300880 182371 350550 TRUE FALSE FALSE 231248.8162 196414.8255 151419.9648 271995.4565 175165.1369 236856.7049 249424.9495 232376.1922 198179.0651 262769.9983 0.88004269 0.747478125 0.576245256 1.035108491 0.666610108 0.901384125 0.949213956 0.884333043 0.754192132 1 18.00344104 -6.040356096 1.093854656 0.891719402 0.766489437 0.128132246 0.131548776 1.07204386 2.719627404 0.06343339 0.070985842 9.11E-07 6.040356096 -0.125229966 SKLS(ph)PS(ph)PSLR ddPTM_HeLa_A485_30min_R1 3 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.116)KLS(0.883)PS(0.933)PS(0.067)LR;S(0.017)KLS(0.983)PS(1)PSLR;S(0.012)KLS(0.988)PS(0.949)PS(0.052)LR ;; 113.99 0.00061411 1849560000 2430750 2404800 1661370 3386920 3178680 2759610 4173500 4147300 2221020 4450300 TRUE FALSE FALSE 2971461.952 2686020.441 2275979.898 3571938.863 2862199.458 2904098.912 3281797.631 3130168.172 2666758.342 3340922.112 0.889413716 0.803975774 0.681243029 1.069147602 0.856709424 0.869250708 0.982302945 0.936917434 0.79821027 1 21.67181492 -5.252439326 24.99912435 0.924283154 0.792787346 0.347064021 0.086970002 781.0924518 2169607.934 0.023374095 0.039768808 5.59E-06 5.252439326 -0.131495808 SKLS(ph)PS(ph)PSLR ddPTM_HeLa_A486_30min_R1 4 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.085)KLS(0.915)PS(0.986)PS(0.013)LR;S(0.182)KLS(0.813)PS(0.879)PS(0.126)LR;S(0.34)KLS(0.66)PS(1)PSLR;S(0.086)KLS(0.914)PS(0.927)PS(0.072)LR ;;; 91.441 0.00024443 1109310000 3322160 2975690 1474300 1413220 2801910 3320870 4122400 3912750 2464770 4659870 TRUE FALSE FALSE 3089293.74 2739885.487 2045188.443 3290047.58 2450468.321 2911174.824 3090931.918 3021902.24 2678418.248 3493008.221 0.884422121 0.784391365 0.585509198 0.941895172 0.701535229 0.833429136 0.884891109 0.865128866 0.766794144 1 21.73603861 -6.512035486 21.11850257 0.866706646 0.777000953 0.164420097 0.104513629 135.4311986 263774.9562 0.037233222 0.030864959 3.08E-07 6.512035486 -0.089705693 SKLS(ph)PSPS(ph)LR ddPTM_HeLa_A485_30min_R1 1 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.11)KLS(0.862)PS(0.306)PS(0.721)LR 91.441 0.0033359 728980000 585450 539280 411250 726740 729950 641790 1011900 1015200 527000 1027500 TRUE FALSE FALSE 715681.3327 602344.1049 563388.4885 766439.966 657273.615 675393.132 795699.2985 766220.6082 632764.0661 771363.1597 0.927813733 0.780882646 0.730380342 0.993617541 0.852093604 0.875583859 1.031549522 0.993333164 0.820319273 1 19.55705072 -5.765819544 1.08100599 0.950210634 0.821794507 0.226873737 0.086933256 0.746374367 1.857561577 0.038931712 0.058577941 1.71E-06 5.765819544 -0.128416127 SKLS(ph)PSPS(ph)LR ddPTM_HeLa_A486_30min_R1 1 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.009)KLS(0.991)PS(0.204)PS(0.796)LR 125.61 0.00012329 952270000 765650 734740 400430 356230 713960 809680 1029900 997630 634390 1112500 TRUE FALSE FALSE 711981.8888 676516.5265 555487.2199 829321.4429 624408.4794 709789.9138 772208.1268 770491.4271 689379.436 833922.7588 0.853774383 0.811246029 0.666113515 0.994482324 0.748760569 0.851145872 0.925994786 0.923936203 0.82667061 1 19.66955424 -8.259495649 0.187873141 1.067581525 0.756096262 0.27666595 0.084921091 7.435557454 0.86735673 0.760173926 0.4129802 5.50E-09 8.259495649 -0.311485262 SKLS(ph)PSPSLR ddPTM_HeLa_A485_30min_R1 7 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 SKLS(0.976)PS(0.024)PSLR;SKLS(0.961)PS(0.039)PSLR;S(0.006)KLS(0.956)PS(0.038)PSLR;SKLS(0.5)PS(0.5)PSLR;S(0.14)KLS(0.648)PS(0.211)PSLR;S(0.153)KLS(0.818)PS(0.029)PSLR;S(0.002)KLS(0.997)PS(0.001)PSLR ;;;;;; 140.31 6.82E-06 6829540000 4566670 5458160 4062596 5698250 6691670 5557470 7578440 8226070 4935290 7488900 TRUE FALSE FALSE 5582509.987 6096444.332 5565519.319 6009530.969 6025423.839 5848450.536 5959244.384 6208613.435 5925757.434 5622055.053 0.992966083 1.084380049 0.989943938 1.06892069 1.07174757 1.040269169 1.05997617 1.104331668 1.054019816 1 22.42266615 -5.32526593 24.9996102 1.061421676 1.028624344 0.157078297 0.034867527 362.2921954 141901.758 0.009297657 0.013790654 4.73E-06 5.32526593 -0.032797332 SKLS(ph)PSPSLR ddPTM_HeLa_A486_30min_R1 5 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 SKLS(0.999)PS(0.001)PSLR;S(0.019)KLS(0.647)PS(0.334)PSLR;S(0.007)KLS(0.818)PS(0.175)PSLR;S(0.025)KLS(0.784)PS(0.191)PSLR;S(0.002)KLS(0.942)PS(0.003)PS(0.054)LR ;;;; 159.12 4.29E-07 5351650000 6315440 5926390 3533300 2339730 6021550 6142540 7233930 7132280 5043270 7605770 TRUE FALSE FALSE 5872760.269 5456761.273 4901488.385 5447009.683 5266271.05 5384735.868 5423924.201 5508415.541 5480424.704 5701235.687 1.03008551 0.957119048 0.859723866 0.955408614 0.923706954 0.944485751 0.951359407 0.966179236 0.961269627 1 22.44284321 -8.003336829 0.855544467 0.998886321 0.941644233 0.139882694 0.039360789 1.269120693 2.10729939 0.038990135 0.013993758 9.92E-09 8.003336829 -0.057242087 SKLS(ph)PSPSLRK ddPTM_HeLa_A485_30min_R1 2 SKLSPSPSLRK 11 2 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.014)KLS(0.704)PS(0.279)PS(0.003)LRK;S(0.111)KLS(0.865)PS(0.024)PSLRK ; 56.527 0.016453 475190000 802830 831870 567550 920830 997740 1074070 1319760 1605810 784260 1220340 TRUE FALSE FALSE 981416.7638 929149.9602 777510.3627 971132.6112 898401.5023 1130306.644 1037782.495 1211982.58 941653.7883 916131.6967 1.071261662 1.014210035 0.848688421 1.060036035 0.980646675 1.233781833 1.132787457 1.322934884 1.02785854 1 19.80519548 -6.248640817 24.75742985 1.162988155 0.991525709 0.329045019 0.104124373 690.5793797 1335851.007 0.033071955 0.032863949 5.64E-07 6.248640817 -0.171462446 SKLSPS(ph)PSLR ddPTM_HeLa_A486_30min_R1 1 SKLSPSPSLR 10 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 SKLS(0.329)PS(0.671)PSLR 155.08 1.07E-06 394520000 469150 439630 272410 168680 394960 449100 535330 518990 366590 556030 TRUE FALSE FALSE 436265.0077 404792.1177 377894.4474 392695.5646 345420.4339 393694.6081 401384.7719 400827.3065 398366.3164 416796.4689 1.046709942 0.97119853 0.906664225 0.942175844 0.828750865 0.944572801 0.963023446 0.961685946 0.955781409 1 18.66898353 -9.472106411 12.08498116 1.000003989 0.943522373 0.084095788 0.051776514 0 0 0.052624669 0.012763357 3.37E-10 9.472106411 -0.056481616 SKMS(ph)LR ddPTM_HeLa_A485_30min_R1 3 SKMSLR 6 1 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7;D6RFL6;E7EMH9 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.001)KMS(0.999)LR;S(0.003)KMS(0.997)LR;S(0.016)KMS(0.984)LR ;; 84.476 0.0056644 313490000 731534 789247 607175 774834 1019743 904212 1236400 1334620 799350 1137491 TRUE FALSE FALSE 894261.2145 881542.5711 831794.2992 817161.2194 918213.8064 951555.1421 972233.0395 1007302.352 959772.2129 853935.4277 1.047223462 1.03232931 0.97407166 0.95693561 1.075273114 1.114317443 1.138532268 1.179600143 1.123940033 1 19.70376746 -5.984570772 4.006971156 1.122570595 1.002867575 0.509221121 0.049586344 0.163113545 5.976222634 0.016316789 0.017872789 1.04E-06 5.984570772 -0.11970302 SKMS(ph)LR ddPTM_HeLa_A486_30min_R1 1 SKMSLR 6 1 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7;D6RFL6;E7EMH9 P25054-2 APC Adenomatous polyposis coli protein 1 0 SKMS(1)LR 69.825 0.01394 174310000 379250 360220 227840 124190 374800 381400 433610 465620 293210 451190 TRUE FALSE FALSE 352666.5334 331674.8553 316065.7498 289120.5962 327789.0891 334346.7458 325116.1917 359608.4904 318625.6789 338209.0872 1.042747066 0.980679904 0.934527668 0.854857563 0.969190662 0.988580019 0.96128757 1.063272703 0.942096741 1 18.3675559 -6.144672236 4.445610387 0.993038404 0.949644699 0.097961682 0.052524008 0.529855498 16.9687846 0.018610076 0.01865756 7.17E-07 6.144672236 -0.043393704 SKPAPSESAGYGIPLKDGDEKT(ph)DEEAEGPYS(ph)DNEMLTHK ddPTM_HeLa_A486_30min_R1 1 SKPAPSESAGYGIPLKDGDEKTDEEAEGPYSDNEMLTHK 39 3 Q6NUK4 Q6NUK4 REEP3 Receptor expression-enhancing protein 3 2 0 SKPAPSESAGYGIPLKDGDEKT(1)DEEAEGPY(0.025)S(0.975)DNEMLTHK 113.95 2.25E-05 403820000 169490 103480 26917 194300 93699 234590 314540 228870 110700 598860 TRUE FALSE FALSE 157609.6262 95279.86793 37339.98326 452340.2194 81946.39771 205648.6709 235838.7651 176761.2972 120295.5651 448901.5581 0.351100644 0.212251141 0.083180783 1.007660168 0.182548704 0.458115298 0.52536856 0.393764054 0.267977607 1 18.77603958 -11.28058892 2.255904025 3.614326228 0.391434986 0.364411839 0.2428483 49971720.94 6659258.605 667350149.1 0.060850219 5.24E-12 11.28058892 -3.222891242 SKPDLESS(ph)LESLVFDLR ddPTM_HeLa_A485_30min_R1 2 SKPDLESSLESLVFDLR 17 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 SKPDLES(0.284)S(0.716)LESLVFDLR;SKPDLES(0.03)S(0.969)LESLVFDLR ; 141.1 2.27E-07 83540000 64539 72211 49989 74478 91713 81740 96439 107408 63503 106056 TRUE FALSE FALSE 78895.47789 80655.4483 68482.01132 78546.54455 82581.7317 86019.78001 75834.01982 81066.01959 76247.46962 79618.19102 0.990922764 1.013027893 0.860130209 0.986540181 1.037221904 1.080403598 0.952471023 1.018184645 0.957663929 1 16.28081047 SKPDLESS(ph)LESLVFDLR ddPTM_HeLa_A486_30min_R1 2 SKPDLESSLESLVFDLR 17 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 SKPDLES(0.205)S(0.795)LESLVFDLR;SKPDLES(0.07)S(0.928)LES(0.002)LVFDLR ; 146.99 3.16E-08 65408000 53632.9 51750.8 34903.1 23395 54766.5 55362.2 68134.8 64985.2 44319.2 72745.9 TRUE FALSE FALSE 49873.51067 47649.87813 48418.51506 54464.74232 47897.17489 48532.17465 51086.75238 50189.48858 48160.82394 54529.85314 0.914609297 0.873831037 0.887926746 0.99880596 0.878366108 0.890011101 0.936858426 0.920403883 0.883201057 1 15.73475865 -10.83651223 2.69268174 1.032674375 0.909948356 0.368900934 0.035567725 52071728.97 35696315.12 10988679.06 0.009032948 1.46E-11 10.83651223 -0.122726019 SKPDPEVGPLLGVQPLPGS(ph)PTADR ddPTM_HeLa_A485_30min_R1 1 SKPDPEVGPLLGVQPLPGSPTADR 24 1 A0A6E1W9L1;Q9H5J0 A0A6E1W9L1 ZBTB3 Zinc finger and BTB domain-containing protein 3 1 0 SKPDPEVGPLLGVQPLPGS(0.847)PT(0.153)ADR 64.152 0.0076348 134570000 82447 109120 106130 98248 141360 117960 144850 156760 110610 146820 TRUE FALSE FALSE 100787.0507 121880.6348 145391.9034 103615.0395 127285.7021 124136.2032 113901.6142 118314.3642 132808.4124 110220.476 0.914413132 1.105789407 1.319100667 0.940070695 1.154828092 1.126253557 1.033397952 1.073433617 1.204934121 1 16.75003274 -4.26301157 7.936080198 1.110125229 0.912823705 0.242668706 0.101589607 0.124923495 96.91650083 0.024329635 0.135985862 5.46E-05 4.26301157 -0.197301523 SKPIPIMPAS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 SKPIPIMPASPQK 13 1 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 SKPIPIMPAS(1)PQK;SKPIPIMPAS(1)PQK ; 184.8 1.64E-17 8240500000 14424700 9959300 7378700 20834200 12555600 10224600 17014800 12824700 9955900 26140900 TRUE FALSE FALSE 17633424.75 11123953.5 10108388.18 21972319.59 11305520.38 10759944.25 13379448.98 9679422.217 11953957.81 19624454.72 0.898543425 0.566841406 0.515091417 1.119639751 0.576093478 0.548292648 0.681774305 0.493232671 0.609135794 1 24.22614923 -10.11287686 4.829010296 1.00001755 0.662555893 0.221838346 0.186533656 3.52E-05 6.47E-06 0.180549222 0.043787343 7.71E-11 10.11287686 -0.337461657 SKPIPIMPAS(ph)PQK ddPTM_HeLa_A486_30min_R1 3 SKPIPIMPASPQK 13 1 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 SKPIPIMPAS(1)PQK;SKPIPIMPAS(1)PQK;SKPIPIMPAS(1)PQK ;; 160.67 4.71E-12 10683820000 24058560 20101910 8863250 8525910 14354210 23811640 26585570 23813960 17531370 32850530 TRUE FALSE FALSE 22372179.18 18508961.44 12295337.77 19848749.36 12553771.13 20874001.96 19933579.19 18392041.16 19051003.27 24624543.47 0.908531734 0.751646887 0.499312313 0.806055527 0.509807264 0.847690922 0.809500457 0.746898767 0.773659146 1 24.55359364 SKPIPIMPAS(ph)PQKGHAVNLLDVPVPVAR ddPTM_HeLa_A485_30min_R1 5 SKPIPIMPASPQKGHAVNLLDVPVPVAR 28 2 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR;S(0.001)KPIPIMPAS(0.999)PQKGHAVNLLDVPVPVAR;S(0.009)KPIPIMPAS(0.991)PQKGHAVNLLDVPVPVAR;SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR;SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR ;;;; 205.35 6.55E-29 15711460000 2459322 3003996 1876343 2706521 3677788 3518397 4997500 6047650 2504856 3830595 TRUE FALSE FALSE 3006389.694 3355287.201 2570480.357 2854371.389 3311614.513 3702614.826 3929743.299 4564454.355 3007557.623 2875698.163 1.045446888 1.166773079 0.893863059 0.992583792 1.151586267 1.287553358 1.366535386 1.58725085 1.045853025 1 21.45548083 -6.06317354 2.878842811 1.301324227 1.026719539 0.28073822 0.16787195 0.299624841 4.898476409 0.057597273 0.060189087 8.65E-07 6.06317354 -0.274604689 SKPIPIMPAS(ph)PQKGHAVNLLDVPVPVAR ddPTM_HeLa_A486_30min_R1 5 SKPIPIMPASPQKGHAVNLLDVPVPVAR 28 2 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 S(0.099)KPIPIMPAS(0.901)PQKGHAVNLLDVPVPVAR;S(0.007)KPIPIMPAS(0.993)PQKGHAVNLLDVPVPVAR;SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR;SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR;S(0.003)KPIPIMPAS(0.997)PQKGHAVNLLDVPVPVAR ;;;; 180.81 1.42E-20 13100420000 4053000 3157020 1739310 1624520 3643090 3500450 4640720 4678810 2528140 4877470 TRUE FALSE FALSE 3768905.63 2906846.238 2412817.412 3781964.659 3186139.682 3068600.069 3479562.771 3613547.101 2747281.211 3656119.765 1.030848515 0.795063188 0.65993938 1.034420342 0.87145386 0.839305128 0.951709188 0.98835578 0.751419917 1 21.8018819 -5.281069998 24.99956311 0.915034011 0.825261591 0.114311867 0.115371796 1798.097242 2289870.034 0.032300531 0.047981864 5.24E-06 5.281069998 -0.08977242 SKPLAAS(ph)PKPAGLK ddPTM_HeLa_A485_30min_R1 2 SKPLAASPKPAGLK 14 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SKPLAAS(1)PKPAGLK;SKPLAAS(1)PKPAGLK ; 123.41 1.45E-05 9964200000 3403300 1924870 1034500 5435400 2962500 2697600 4988200 4070500 2103740 6383200 TRUE FALSE FALSE 4160352.344 2149966.802 1417204.599 5732322.139 2667543.098 2838842.165 3922430.32 3072203.493 2525941.321 4791985.714 0.868189638 0.448658851 0.295744746 1.196231058 0.556667581 0.592414572 0.818539652 0.641112824 0.527117874 1 22.19219218 -10.6110682 2.759963355 1.028777373 0.658335284 0.154664837 0.238048052 87602623.3 83986459.01 18227988.05 0.062166028 2.45E-11 10.6110682 -0.370442089 SKPLAAS(ph)PKPAGLK ddPTM_HeLa_A486_30min_R1 2 SKPLAASPKPAGLK 14 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SKPLAAS(1)PKPAGLK;SKPLAAS(1)PKPAGLK ; 164.59 2.91E-12 18158100000 9158500 6821500 2552910 4748900 5131400 8951200 12790300 11492700 5407000 13770400 TRUE FALSE FALSE 8516536.445 6280939.497 3541465.121 11055679.2 4487771.964 7846891.953 9590031.658 8876063.094 5875683.114 10322202.21 0.825069716 0.608488321 0.343092012 1.071058188 0.434768848 0.760195527 0.929068377 0.859900137 0.56922767 1 23.29924746 -6.515395248 24.53248711 0.830268066 0.653251706 0.140033631 0.213918634 580.5529811 1903190.676 0.077251913 0.06248593 3.05E-07 6.515395248 -0.17701636 SKPNLPS(ph)ESR ddPTM_HeLa_A485_30min_R1 4 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 SKPNLPS(1)ESR;SKPNLPS(1)ESR;SKPNLPS(0.988)ES(0.012)R;SKPNLPS(1)ESR ;;; 143.46 2.90E-06 2122150000 3835330 4357610 2982840 3559050 3230020 3900140 4488200 4341800 3058020 4218900 TRUE FALSE FALSE 4688485.927 4867194.583 4086316.642 3753471.89 2908427.868 4104345.3 3529259.405 3276966.742 3671736.564 3167205.873 1.48032244 1.536747145 1.290196093 1.185105118 0.918294542 1.295888384 1.114313229 1.034655426 1.159298357 1 21.59477922 -5.033185539 2.113781883 1.100110123 1.515194365 0.731082404 0.099100951 0.161316476 1.411565915 0.028307471 0.070294735 9.26E-06 5.033185539 0.415084242 SKPNLPS(ph)ESR ddPTM_HeLa_A486_30min_R1 3 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 SKPNLPS(1)ESR;SKPNLPS(0.999)ES(0.001)R;SKPNLPS(1)ESR ;; 135.91 2.10E-05 1932160000 2998420 2599460 1240150 672130 1610960 2192700 2292590 2040910 1913080 3348860 TRUE FALSE FALSE 2788246.242 2393469.323 1720369.292 1564752.608 1408898.375 1922186.968 1718959.733 1576239.346 2078907.315 2510283.659 1.110729551 0.953465683 0.685328643 0.623336969 0.561250666 0.765725005 0.684767129 0.627912842 0.828156335 1 21.25941897 -4.607546606 3.112757274 0.699099198 1.091627259 0.527245914 0.119840082 0.169903794 3.143908424 0.03003638 0.109315234 2.47E-05 4.607546606 0.392528061 SKPNLPS(ph)ESRS(ph)R ddPTM_HeLa_A485_30min_R1 1 SKPNLPSESRSR 12 2 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 2 0 S(0.002)KPNLPS(0.997)ES(0.005)RS(0.995)R 74.744 0.034454 521300000 542410 614680 609770 775310 1092300 855810 1259200 1331400 729940 1106300 TRUE FALSE FALSE 663067.2332 686561.479 835349.2976 817663.2221 983546.7767 900618.8883 990161.6333 1004872.062 876432.2626 830519.7699 0.798376218 0.826664823 1.005815067 0.984519877 1.184254502 1.084403913 1.192219221 1.209931538 1.055281637 1 19.66365499 -4.961177135 1.082420027 1.133140156 0.760675222 0.728491686 0.070768937 0.332148939 0.63599739 0.023871255 0.109549707 1.09E-05 4.961177135 -0.372464934 SKPNLPSES(ph)R ddPTM_HeLa_A485_30min_R1 2 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 SKPNLPS(0.012)ES(0.988)R;SKPNLPS(0.004)ES(0.996)R ; 115.06 0.00024567 1844670000 2369030 2890200 1757830 1896030 1651510 2287720 2498980 2221040 1779220 2239740 TRUE FALSE FALSE 2896012.55 3228183.749 2408124.466 1999605.318 1487079.866 2407501.482 1965052.508 1676326.458 2136293.134 1681414.037 1.722367297 1.919921969 1.432201952 1.18924029 0.884422178 1.43183144 1.168690438 0.996974225 1.270533662 1 20.68124359 -4.995314122 2.785405005 1.138482462 1.822513405 0.757978402 0.154198146 0.121875291 1.905529489 0.042522449 0.09745047 1.01E-05 4.995314122 0.684030943 SKPNLPSES(ph)R ddPTM_HeLa_A486_30min_R1 3 SKPNLPSESR 10 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 SKPNLPS(0.003)ES(0.997)R;SKPNLPS(0.005)ES(0.995)R;SKPNLPSES(1)R ;; 121.42 9.79E-05 2926500000 6875300 5403500 2216340 1098270 2609890 4104970 3958290 3494000 3856400 7029800 TRUE FALSE FALSE 6393376.974 4975306.981 3074566.204 2556828.063 2282533.26 3598540.538 2967883.975 2698492.473 4190675.857 5269492.324 1.213281391 0.944171976 0.583465354 0.485213358 0.433159993 0.682900803 0.563220097 0.51209724 0.795271271 1 22.32923254 -4.560400546 2.785350337 0.600652057 1.198797702 0.570971055 0.160823254 0.180119161 2.611043663 0.040632119 0.17933615 2.75E-05 4.560400546 0.598145645 SKPPPTYES(ph)EEEDK ddPTM_HeLa_A485_30min_R1 1 SKPPPTYESEEEDK 14 1 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 0 SKPPPT(0.001)YES(0.999)EEEDK 69.148 0.0053184 1189000000 884350 519990 316270 1615900 601570 828470 1620100 1381700 592900 2639900 TRUE FALSE FALSE 1081070.607 580798.3072 433271.4341 1704172.525 541675.5786 871847.4081 1273952.4 1042835.909 711889.5916 1981821.514 0.545493426 0.293062873 0.218622833 0.859902122 0.27332208 0.439922264 0.642818938 0.526200721 0.35920974 1 20.91839561 -14 0.290396075 5.175243168 0.432170139 0.429848779 0.184490755 239.293154 2.258252264 605.4729948 0.196991991 1.00E-14 14 -4.743073029 SKPPPTYES(ph)EEEDK ddPTM_HeLa_A486_30min_R1 1 SKPPPTYESEEEDK 14 1 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 0 S(0.003)KPPPT(0.092)Y(0.013)ES(0.892)EEEDK 47.485 0.029518 646730000 1562700 1118500 315890 1313600 925980 2005700 3124700 2655000 896530 3880500 TRUE FALSE FALSE 1453162.8 1029865.986 438211.0678 3058127.186 809834.954 1758257.126 2342867.01 2050514.458 974241.9423 2908797.542 0.499575092 0.354052137 0.150650247 1.051337242 0.278408842 0.604461844 0.805441759 0.704935434 0.334929444 1 21.47199145 -14 0.06967111 2.471733716 1.15E-10 0.240330946 0.255368774 458.6590536 2.297128106 110.5818342 13.88044602 1.00E-14 14 -2.471733716 SKPPPTYES(ph)EEEDKCKPMSYEEK ddPTM_HeLa_A485_30min_R1 1 SKPPPTYESEEEDKCKPMSYEEK 23 3 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 0 SKPPPT(0.001)YES(0.999)EEEDKCKPMSYEEK 130.87 2.36E-06 1212500000 85540 45096 31743 238920 57667 82320 156970 92141 46420 342770 TRUE FALSE FALSE 104568.0779 50369.58492 43486.05664 251971.5946 51925.471 86630.14791 123432.0772 69543.27528 55736.06821 257323.7472 0.406367772 0.195744021 0.168993562 0.979200705 0.201790435 0.336658194 0.4796762 0.270255956 0.216599007 1 17.97322508 -10.03050843 4.53071048 1.000023654 0.364652254 0.414621313 0.227506235 147925132.6 336710922.3 58100.08668 0.056717231 9.32E-11 10.03050843 -0.635371401 SKPPPTYES(ph)EEEDKCKPMSYEEK ddPTM_HeLa_A486_30min_R1 2 SKPPPTYESEEEDKCKPMSYEEK 23 3 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 0 SKPPPTYES(1)EEEDKCKPMSYEEK;SKPPPTYES(1)EEEDKCKPMSYEEK ; 238.73 6.48E-48 613780000 465330 367300 65738 477900 286470 723950 1101800 891200 332070 1374350 TRUE FALSE FALSE 432712.77 338193.8103 91193.51412 1112575.352 250538.2614 634636.4096 826117.9863 688293.2148 360854.095 1030203.814 0.420026371 0.328278546 0.088519876 1.079956545 0.243192908 0.616029955 0.801897619 0.668113634 0.35027447 1 19.97449836 -9.720013753 0.093987815 1.670084109 2.47E-14 0.256232438 0.269597979 77.59507666 1.627793618 21.77281418 8.356202414 1.91E-10 9.720013753 -1.670084109 SKPS(ph)PQKDQALGDGIAPPQK ddPTM_HeLa_A485_30min_R1 1 SKPSPQKDQALGDGIAPPQK 20 2 Q9H9J4-2;Q9H9J4;B4DP25;E5RJP3 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 S(0.031)KPS(0.969)PQKDQALGDGIAPPQK 139.79 3.15E-08 174340000 328410 214490 118290 465940 301020 373470 571390 589160 240290 712690 TRUE FALSE FALSE 401463.6715 239572.7397 162050.3935 491393.1224 271049.3919 393024.3117 449307.8587 444667.5862 288513.9989 535029.4991 0.750358012 0.447774824 0.302881231 0.918441176 0.506606444 0.734584378 0.839781469 0.831108541 0.539248769 1 19.02925891 -5.910629991 0.954388658 0.789851687 0.528197951 0.219708012 0.189675854 0.871877859 1.725413058 0.095635975 0.127204761 1.23E-06 5.910629991 -0.261653736 SKPVLEPLT(ph)PPLGS(ph)PRPR ddPTM_HeLa_A485_30min_R1 2 SKPVLEPLTPPLGSPRPR 18 2 Q9H7P9;Q9H7P9-3;H7BXC7;Q9H7P9-2;E7ESZ3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 2 0 SKPVLEPLT(1)PPLGS(1)PRPR;S(0.002)KPVLEPLT(0.998)PPLGS(1)PRPR ; 96.793 0.00039157 822380000 624380 783330 578020 687590 838270 783940 975070 1043700 601240 880380 TRUE FALSE FALSE 763271.1769 874933.6294 791853.6514 725151.3006 754808.8955 824985.8862 766738.3289 787730.9385 721903.3531 660917.4682 1.154866097 1.323816772 1.198112759 1.097188886 1.142062257 1.248243428 1.160112065 1.191874896 1.092274585 1 19.3341106 -14 0.14239874 0.340960755 1.247490491 0.480350782 0.060982201 124.6628109 1.078380354 23.07330844 0.373579822 1.00E-14 14 0.906529736 SKPVLEPLT(ph)PPLGS(ph)PRPR ddPTM_HeLa_A486_30min_R1 2 SKPVLEPLTPPLGSPRPR 18 2 Q9H7P9;Q9H7P9-3;H7BXC7;Q9H7P9-2;E7ESZ3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 2 0 S(0.003)KPVLEPLT(0.997)PPLGS(1)PRPR;SKPVLEPLT(1)PPLGS(1)PRPR ; 100.79 0.0015829 842260000 716060 684120 456090 234770 699810 621830 718570 713400 530890 787120 TRUE FALSE FALSE 665867.8917 629907.8397 632700.2625 546556.4246 612033.3043 545114.9369 538776.1857 550974.3934 576907.9727 590020.0287 1.128551336 1.067604164 1.072336924 0.926335375 1.03730937 0.923892259 0.913148977 0.933823204 0.977776931 1 19.1704044 -4.946748113 1.03511541 0.949619312 1.136237189 0.673243026 0.040949632 0.432850104 0.737310432 0.014409838 0.070369119 1.13E-05 4.946748113 0.186617877 SKPVLEPLT(ph)PPLGSPRPR ddPTM_HeLa_A485_30min_R1 2 SKPVLEPLTPPLGSPRPR 18 2 Q9H7P9;Q9H7P9-3;H7BXC7;Q9H7P9-2;E7ESZ3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 SKPVLEPLT(1)PPLGSPRPR;SKPVLEPLT(1)PPLGSPRPR ; 129.84 8.68E-06 1692820000 1080450 1333860 1003960 1180710 1523710 1450130 1953850 2172300 1161160 1527180 TRUE FALSE FALSE 1320792.375 1489843.324 1375366.582 1245209.198 1372004.082 1526056.564 1536393.986 1639540.019 1394194.161 1146482.132 1.152039215 1.299491098 1.199640661 1.086113044 1.196707776 1.331077496 1.34009414 1.430061554 1.216062704 1 20.12878244 -6.212029692 8.244852314 1.295072509 1.187933879 0.065142093 0.1179671 0.645329815 100.6782307 0.037849974 0.03774477 6.14E-07 6.212029692 -0.10713863 SKPVLEPLT(ph)PPLGSPRPR ddPTM_HeLa_A486_30min_R1 2 SKPVLEPLTPPLGSPRPR 18 2 Q9H7P9;Q9H7P9-3;H7BXC7;Q9H7P9-2;E7ESZ3 Q9H7P9 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 SKPVLEPLT(1)PPLGSPRPR;SKPVLEPLT(1)PPLGSPRPR ; 132.36 6.81E-06 1424180000 1763030 1340420 912360 517200 1624790 1491110 1770600 1842950 1283040 1994410 TRUE FALSE FALSE 1639450.701 1234200.237 1265650.226 1204067.738 1420993.688 1307152.009 1327577.153 1423350.516 1394254.94 1494996.755 1.096624923 0.82555379 0.846590618 0.805398229 0.950499513 0.874351068 0.888013401 0.952075991 0.932614025 1 20.51171092 -7.840176309 0.998169903 0.99660134 0.89005706 0.126547503 0.07829593 0.979009097 2.136667236 0.073014665 0.025046651 1.44E-08 7.840176309 -0.106544281 SKPYEGSQRNS(ph)TELAPPLPVR ddPTM_HeLa_A485_30min_R1 1 SKPYEGSQRNSTELAPPLPVR 21 2 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 SKPYEGSQRNS(0.997)T(0.003)ELAPPLPVR 276.65 5.75E-73 455820000 218590 203500 152160 240960 304930 201190 264930 248540 199790 336180 TRUE FALSE FALSE 267214.5914 227297.5548 208450.3159 254123.0347 274570.0985 211723.9973 208325.5412 187585.1753 239886.0204 252376.5129 1.05879342 0.900628795 0.825949743 1.006920302 1.087938395 0.838921161 0.825455344 0.74327509 0.950508499 1 17.94521813 -6.332804661 24.99998973 0.852700482 0.965234469 0.210537138 0.096587299 233.679494 81859.15452 0.034722669 0.030622517 4.65E-07 6.332804661 0.112533987 SKPYEGSQRNS(ph)TELAPPLPVR ddPTM_HeLa_A486_30min_R1 2 SKPYEGSQRNSTELAPPLPVR 21 2 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 SKPYEGSQRNS(0.701)T(0.299)ELAPPLPVR;SKPYEGS(0.001)QRNS(0.905)T(0.094)ELAPPLPVR ; 266.24 1.24E-59 754070000 701620 657650 452730 277657 702060 704260 835710 835490 517300 717510 TRUE FALSE FALSE 652440.0612 605535.4189 628039.1805 646399.528 614001.0884 617375.5616 626606.5188 645267.1656 562139.9805 537840.8258 1.213072771 1.12586362 1.167704552 1.201841692 1.141603722 1.147877833 1.165040824 1.199736306 1.045179082 1 19.03681974 -7.885003682 4.536159706 1.00230277 1.167717875 0.828809236 0.027124039 0.074197925 2.385817054 0.025416971 0.006676818 1.30E-08 7.885003682 0.165415105 SKPYEGSQRNST(ph)ELAPPLPVR ddPTM_HeLa_A485_30min_R1 1 SKPYEGSQRNSTELAPPLPVR 21 2 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 SKPYEGSQRNS(0.348)T(0.652)ELAPPLPVR 227.25 7.52E-36 347510000 170110 152360 123310 161700 213810 154340 214150 178960 144200 250730 TRUE FALSE FALSE 207950.3826 170177.1766 168927.5004 170533.2616 192522.3257 162421.0037 168395.1031 135069.7794 173139.6173 188227.6253 1.104781417 0.904103084 0.897463909 0.905994863 1.022816525 0.862896737 0.894635433 0.717587438 0.919841692 1 17.52211886 -6.297001712 21.88015087 0.862319037 0.956280047 0.17974511 0.089133023 219.3960257 134984.3543 0.030840306 0.027201284 5.05E-07 6.297001712 0.09396101 SKQNS(ph)LESPK ddPTM_HeLa_A486_30min_R1 1 SKQNSLESPK 10 1 O95197-6 O95197-6 RTN3 Reticulon-3 1 0 S(0.205)KQNS(0.794)LES(0.001)PK 60.401 0.014187 159610000 154930 398640 536410 33682 570580 189370 88321 188940 258920 69970 TRUE FALSE FALSE 144070.2071 367050.3146 744122.3176 78413.39819 499012.536 166007.4548 66222.15164 145922.4865 281363.3941 52449.05657 2.746859838 6.998225298 14.18752531 1.49503925 9.51423283 3.165118033 1.262599482 2.782175621 5.3645082 1 15.6786292 -6.37402396 6.922629304 2.685378926 7.074729154 0.278612236 3.442832593 0.350197064 19.16007614 1.209560756 1.063883414 4.23E-07 6.37402396 4.389350229 SKRPPKS(ph)PEEEGQMS(ph)S ddPTM_HeLa_A485_30min_R1 3 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 0 S(0.012)KRPPKS(0.988)PEEEGQMS(0.555)S(0.445);S(0.001)KRPPKS(0.999)PEEEGQMS(0.891)S(0.109);S(0.065)KRPPKS(0.935)PEEEGQMS(0.531)S(0.469) ;; 160.69 7.73E-12 523016000 623785 549559 316628 990140 729058 752836 1297690 1306530 533619 1393200 TRUE FALSE FALSE 762543.8212 613825.1445 433761.8732 1044228.841 656470.4256 792253.3289 1020427.93 986101.4689 640711.4387 1045900.88 0.729078478 0.586886536 0.414725603 0.998401341 0.627660267 0.75748414 0.975644968 0.942824973 0.612592886 1 19.9963147 -5.261450022 25 0.835310001 0.577895842 0.39168959 0.152746437 1.028383552 2416347.964 0.042269926 0.06753827 5.48E-06 5.261450022 -0.257414159 SKRPPKS(ph)PEEEGQMS(ph)S ddPTM_HeLa_A486_30min_R1 4 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 0 S(0.179)KRPPKS(0.821)PEEEGQMS(0.534)S(0.466);S(0.134)KRPPKS(0.866)PEEEGQMS(0.587)S(0.413);S(0.005)KRPPKS(0.995)PEEEGQMS(0.885)S(0.115);S(0.028)KRPPKS(0.972)PEEEGQMS(0.523)S(0.477) ;;; 90.193 0.00055413 689860000 1280605 952395 398184 724163 882605 1208502 1703970 1578490 771278 2305130 TRUE FALSE FALSE 1190841.203 876923.7516 552371.5085 1685888.061 771900.4509 1059409.31 1277618.683 1219102.285 838132.998 1727910.444 0.689179932 0.507505325 0.319676005 0.975680231 0.446724802 0.613115867 0.739400984 0.705535573 0.485055809 1 20.72059702 -14 0.264044925 3.550233971 0.581189621 0.303013308 0.17521128 251.2059685 2.461347403 348.5493162 0.222829619 1.00E-14 14 -2.96904435 SKRPPKS(ph)PEEEGQMSS(ph) ddPTM_HeLa_A485_30min_R1 1 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 0 S(0.001)KRPPKS(0.999)PEEEGQMS(0.131)S(0.869) 126.45 2.06E-05 402730000 310160 265590 151640 465750 350090 356400 611390 630740 239490 678790 TRUE FALSE FALSE 379154.022 296648.4402 207737.9463 491192.7432 315233.8104 375060.5529 480761.5319 476050.026 287553.4463 509580.1452 0.744051795 0.582142854 0.407664914 0.963916565 0.618614782 0.736018772 0.943446358 0.934200499 0.56429484 1 18.95894954 -5.795371734 0.948823406 0.843486964 0.601975673 0.217496616 0.171746965 0.891205306 1.732730742 0.083615508 0.127497898 1.60E-06 5.795371734 -0.241511291 SKRPPKS(ph)PEEEGQMSS(ph) ddPTM_HeLa_A486_30min_R1 2 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 0 S(0.034)KRPPKS(0.966)PEEEGQMS(0.093)S(0.907);S(0.01)KRPPKS(0.99)PEEEGQMS(0.209)S(0.791) ; 149.62 5.27E-08 361919000 756040 536677 211754 433897 496264 709250 1003960 910880 455032 1321550 TRUE FALSE FALSE 703045.5002 494148.76 293750.8198 1010134.144 434017.9416 621749.9461 752758.5892 703492.5084 494474.5401 990625.2782 0.709698728 0.498825107 0.296530713 1.019693487 0.438125244 0.627633839 0.759882274 0.710149967 0.49915397 1 19.91797991 -14 0.227863332 2.998151816 0.575474463 0.257860141 0.191475011 221.4064825 2.217070464 204.131249 0.334375071 1.00E-14 14 -2.422677353 SKRPPKSPEEEGQMS(ph)S ddPTM_HeLa_A486_30min_R1 1 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 SKRPPKS(0.001)PEEEGQMS(0.817)S(0.182) 77.871 0.029614 84740000 158950 98970 54984 78010 123910 121740 193520 189350 76729 235080 TRUE FALSE FALSE 147808.4258 91127.25676 76275.27732 181611.2224 108368.0524 106720.9566 145099.2492 146239.1385 83379.9315 176214.4379 0.838798611 0.517138424 0.432854868 1.030626234 0.614978283 0.605631172 0.823424294 0.829893057 0.473173098 1 17.42697261 -11.08762088 2.52028729 1.5206899 0.686885308 0.212182036 0.181967257 36595564.47 13352774.28 109185670.2 0.044662328 8.17E-12 11.08762088 -0.833804593 SKRPPKSPEEEGQMSS(ph) ddPTM_HeLa_A485_30min_R1 1 SKRPPKSPEEEGQMSS 16 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 SKRPPKSPEEEGQMS(0.122)S(0.878) 85.974 0.0073961 218370000 147510 189660 98057 162160 194850 253040 386470 503200 149190 231490 TRUE FALSE FALSE 180323.0906 211839.0872 134332.3648 171018.3902 175450.0498 266288.7831 303897.5273 379789.411 179131.0645 173783.8033 1.037628865 1.218980614 0.772985527 0.984087049 1.009588043 1.532299202 1.748710303 2.185413162 1.030769618 1 17.4069341 -6.282278019 4.749547425 1.594988419 0.999822451 0.331829999 0.338615461 0.19666817 12.15506687 0.116781913 0.106752151 5.22E-07 6.282278019 -0.595165968 SKS(ph)AT(ph)TTPSGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SKSATTTPSGSPR 13 1 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.134)KS(0.769)AT(0.519)T(0.521)T(0.057)PS(0.035)GS(0.965)PR;SKS(0.992)AT(0.501)T(0.501)T(0.007)PSGS(1)PR ; 176.28 6.99E-12 698860000 490990 491890 378150 632880 690360 579240 833010 881190 506780 893080 TRUE FALSE FALSE 600209.0316 549412.2566 518043.4211 667452.6319 621625.3344 609568.1107 655030.6084 665076.7708 608486.0975 670451.5919 0.895230974 0.819465959 0.772678337 0.995526955 0.927174075 0.90919034 0.97699911 0.991983282 0.907576483 1 19.35477364 -5.265663633 24.99901552 0.955445732 0.828159175 0.657023846 0.04274783 215.6924227 1276463.567 0.01198919 0.018524178 5.42E-06 5.265663633 -0.127286557 SKS(ph)AT(ph)TTPSGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SKSATTTPSGSPR 13 1 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.003)KS(0.99)AT(0.818)T(0.18)T(0.009)PSGS(1)PR;S(0.037)KS(0.942)AT(0.775)T(0.13)T(0.127)PS(0.259)GS(0.73)PR ; 161.91 9.24E-07 98198000 592880 630740 379910 308590 731840 667550 825400 747310 511510 802450 TRUE FALSE FALSE 551322.1736 580757.8653 527021.3263 718413.1153 640045.8031 585194.4682 618876.1898 577163.8267 555848.0986 601511.2969 0.916561628 0.965497852 0.876161976 1.194346838 1.064062814 0.972873612 1.028868773 0.959522838 0.924085884 1 19.19823231 SKS(ph)ATT(ph)TPS(ph)GSPR ddPTM_HeLa_A485_30min_R1 1 SKSATTTPSGSPR 13 1 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.015)KS(0.908)AT(0.372)T(0.581)T(0.125)PS(0.625)GS(0.375)PR 103.79 0.0029737 157000000 228320 224580 182520 318510 298870 272830 405500 417100 216700 419210 TRUE FALSE FALSE 279108.9963 250842.6774 250041.7433 335909.3948 269113.4534 287114.9569 318861.6124 314805.571 260189.7023 314708.662 0.886880566 0.79706315 0.794518148 1.067366219 0.855119308 0.912319842 1.013196174 1.000307932 0.826763714 1 18.26365736 -5.231575826 24.99067983 0.950256803 0.823244853 0.386531578 0.073455158 724.7519988 606492.4318 0.01956556 0.033882716 5.87E-06 5.231575826 -0.12701195 SKS(ph)ATT(ph)TPS(ph)GSPR ddPTM_HeLa_A486_30min_R1 1 SKSATTTPSGSPR 13 1 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.395)KS(0.57)AT(0.038)T(0.6)T(0.403)PS(0.77)GS(0.223)PR 74.793 0.0068409 204250000 418300 447550 291470 224120 475790 451640 612210 539110 343780 583790 TRUE FALSE FALSE 388979.3301 412084.5081 404334.9898 521762.6864 416111.9816 395921.2487 459028.5827 416366.4217 373579.1272 437605.1842 0.888881906 0.941681047 0.92397212 1.192313769 0.950884488 0.904745335 1.048955998 0.951465926 0.853689903 1 18.7392703 -9.660258557 13.93863929 0.999999554 0.967170299 0.012504626 0.091274241 0 0 0.089948252 0.021815655 2.19E-10 9.660258557 -0.032829255 SKS(ph)ATTT(ph)PSGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SKSATTTPSGSPR 13 1 A0A096LNZ0;A0A096LP25;A0A096LP60;Q2M2I8;Q2M2I8-2 A0A096LNZ0;Q2M2I8 AAK1 AP2-associated protein kinase 1 3 0 S(0.383)KS(0.614)AT(0.005)T(0.093)T(0.861)PS(0.062)GS(0.982)PR 71.299 0.0084831 606960000 544800 612600 456900 325790 773770 682370 791180 746170 470050 862850 TRUE FALSE FALSE 506612.3334 564055.3449 633823.9162 758455.5845 676716.5515 598186.1272 593218.3958 576283.3798 510794.3125 646786.7438 0.783275691 0.872088599 0.979958112 1.172651715 1.046274615 0.92485836 0.917177727 0.89099442 0.789741468 1 19.30293058 -6.650498256 2.854333165 0.887967061 0.977049087 0.082547469 0.107290075 0.65958513 10.84155191 0.050894812 0.037117659 2.24E-07 6.650498256 0.089082025 SKS(ph)CDDGLNTFR ddPTM_HeLa_A485_30min_R1 1 SKSCDDGLNTFR 12 1 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.004)KS(0.996)CDDGLNTFR 133.16 1.06E-05 329350000 307080 257730 200380 407990 334560 264360 386930 340150 261780 507420 TRUE FALSE FALSE 375388.8866 287869.2815 274508.9005 430277.4606 301250.0317 278201.4808 304259.2446 256727.6792 314316.8448 380929.5324 0.985454932 0.755702189 0.720629085 1.129546081 0.790828765 0.73032269 0.798728423 0.67395058 0.825131207 1 18.53916461 -5.958537902 24.9999967 0.782122778 0.885668859 0.093624952 0.133245357 323.4077354 195000.6594 0.040879905 0.046353422 1.10E-06 5.958537902 0.103546082 SKS(ph)CDDGLNTFR ddPTM_HeLa_A486_30min_R1 2 SKSCDDGLNTFR 12 1 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.003)KS(0.997)CDDGLNTFR;S(0.193)KS(0.807)CDDGLNTFR ; 153.92 3.87E-08 440970000 587830 662830 336852 236085 520370 701160 772460 723080 570860 798330 TRUE FALSE FALSE 546626.1526 610304.9368 467290.1156 549617.8111 455100.3423 614658.0081 579182.3378 558450.4687 620342.6044 598422.9717 0.913444467 1.019855463 0.780869281 0.918443705 0.760499452 1.027129701 0.967847768 0.933203595 1.036628996 1 19.19080603 -6.299301393 24.99780415 0.987217603 0.883250211 0.375730771 0.073383547 686.8916863 453507.4039 0.025872647 0.022818016 5.02E-07 6.299301393 -0.103967392 SKS(ph)DATASISLSSNLKR ddPTM_HeLa_A485_30min_R1 2 SKSDATASISLSSNLKR 17 2 Q9UBF8-2;A0A0B4J1S8;Q9UBF8 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 SKS(0.979)DAT(0.021)ASISLSSNLKR;SKS(0.997)DAT(0.002)ASISLSSNLKR ; 171.5 2.37E-12 3004900000 1767390 1679530 1080450 1902330 2035140 2227370 3217300 3702300 1574220 2627070 TRUE FALSE FALSE 2160539.808 1875936.424 1480153.416 2006249.471 1832514.316 2343991.649 2529897.572 2794305.12 1890151.514 1972189.797 1.095502984 0.95119467 0.750512663 1.017269978 0.929177465 1.188522349 1.282786057 1.41685406 0.958402441 1 20.91136697 -6.275083339 7.15520011 1.203081384 0.941424251 0.345145369 0.148164587 0.159661967 47.74563568 0.05101198 0.046652114 5.31E-07 6.275083339 -0.261657133 SKS(ph)DATASISLSSNLKR ddPTM_HeLa_A486_30min_R1 2 SKSDATASISLSSNLKR 17 2 Q9UBF8-2;A0A0B4J1S8;Q9UBF8 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 SKS(0.946)DAT(0.054)ASISLSSNLKR;S(0.009)KS(0.926)DAT(0.064)AS(0.001)ISLSSNLKR ; 175.28 6.81E-13 2692200000 3245300 2903600 1707200 1395970 3094100 3272900 3860600 3541300 2363620 4202400 TRUE FALSE FALSE 3017821.229 2673508.161 2368273.56 3249888.708 2706009.127 2869122.874 2894637.047 2735023.296 2568500.485 3150091.687 0.958010601 0.848708046 0.751810993 1.031680672 0.859025513 0.910806148 0.918905649 0.868236092 0.815373246 1 21.58696239 -10.13914836 4.437513151 1.000014675 0.884613059 0.182631993 0.073157897 1.24E-05 2.40E-06 0.069475544 0.016847745 7.26E-11 10.13914836 -0.115401616 SKS(ph)DLSER ddPTM_HeLa_A485_30min_R1 3 SKSDLSER 8 1 V9GZ26;Q9BQ89 V9GZ26 FAM110A Protein FAM110A 1 0 S(0.01)KS(0.99)DLSER;S(0.008)KS(0.992)DLSER;S(0.244)KS(0.753)DLS(0.003)ER ;; 133.32 0.00024835 1263890000 1131180 1202980 696290 1446230 1044900 1340770 1661630 1974120 1123130 1939030 TRUE FALSE FALSE 1382807.088 1343658.046 953876.646 1525233.883 940866.0871 1410970.644 1306609.176 1489963.975 1348531.889 1455665.506 0.949948379 0.923054122 0.655285601 1.047791458 0.646347724 0.969295925 0.897602623 1.023562053 0.926402311 1 20.47324745 SKS(ph)DLSER ddPTM_HeLa_A486_30min_R1 4 SKSDLSER 8 1 V9GZ26;Q9BQ89 V9GZ26 FAM110A Protein FAM110A 1 0 S(0.009)KS(0.991)DLSER;S(0.022)KS(0.976)DLS(0.002)ER;S(0.005)KS(0.994)DLSER;S(0.043)KS(0.956)DLS(0.001)ER ;;; 118.87 0.00040089 1113680000 1746610 1129750 1021720 779820 1140700 2130460 1805450 1489140 1546490 2209890 TRUE FALSE FALSE 1624181.659 1040224.496 1417357.347 1815460.37 997622.7694 1867625.506 1353707.314 1150095.33 1680540.998 1656519.16 0.980478643 0.627958022 0.855623877 1.095948911 0.602240405 1.127439725 0.817199913 0.694284351 1.014501395 1 20.65972346 -14 0.207726771 1.665379051 0.840246697 0.051986275 0.17690795 488.3477105 4.861547602 134.9537077 0.375833873 1.00E-14 14 -0.825132354 SKS(ph)DSYTLDPDTLR ddPTM_HeLa_A485_30min_R1 4 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.013)KS(0.986)DS(0.001)YTLDPDTLR;S(0.001)KS(0.906)DS(0.091)YT(0.001)LDPDTLR;S(0.017)KS(0.98)DS(0.003)YTLDPDTLR;S(0.028)KS(0.943)DS(0.028)YTLDPDTLR ;;; 230.67 1.25E-28 5675130000 2779470 2718220 2162660 3318190 3373150 3280080 4355350 4552350 2740810 4610800 TRUE FALSE FALSE 3397753.512 3036092.184 2962717.93 3499454.318 3037307.342 3451819.917 3424793.893 3435879.025 3290865.427 3461412.415 0.981608981 0.877125237 0.855927458 1.010990283 0.877476295 0.997228733 0.98942093 0.992623418 0.950729076 1 21.72292941 -6.279082179 24.73778189 0.985753181 0.919634873 0.332370865 0.04631593 867.997142 1217054.454 0.016097144 0.01422581 5.26E-07 6.279082179 -0.066118308 SKS(ph)DSYTLDPDTLR ddPTM_HeLa_A486_30min_R1 3 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.232)KS(0.763)DS(0.005)YTLDPDTLR;S(0.025)KS(0.46)DS(0.402)Y(0.008)T(0.106)LDPDTLR;S(0.058)KS(0.941)DS(0.001)YTLDPDTLR ;; 224.4 3.65E-28 4618340000 6597700 5412150 3236480 2336320 5137570 5148880 6068580 5970360 3999140 6545660 TRUE FALSE FALSE 6135235.301 4983271.523 4489731.732 5439071.031 4493168.065 4513663.536 4550157.097 4611039.36 4345788.675 4906584.131 1.250408662 1.015629487 0.91504224 1.108524971 0.915742591 0.919919727 0.927357399 0.939765678 0.885705525 1 22.22628757 -1.129453123 0.979671564 0.943854051 199.9999998 0.684020358 0.060526257 622.4794669 1.257707126 0.019606555 277514.5456 0.074224431 1.129453123 199.0561457 SKS(ph)EDMDNVQSK ddPTM_HeLa_A485_30min_R1 3 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.111)KS(0.889)EDMDNVQSK;S(0.002)KS(0.858)EDMDNVQS(0.14)K;S(0.002)KS(0.998)EDMDNVQSK ;; 190.46 1.57E-13 2272110000 2753360 1737875 1138654 4283080 2470180 2388005 4149130 3451070 1684946 5316730 TRUE FALSE FALSE 3365835.433 1941104.364 1559889.498 4517053.815 2224240.206 2513037.249 3262634.48 2604689.671 2023099.207 3991367.058 0.843278853 0.486325696 0.390815847 1.131705942 0.557262756 0.629618177 0.817422811 0.652580841 0.506868744 1 21.92845153 -10.20065387 3.527920379 1.000486408 0.668040326 0.191456796 0.20441289 217719481.1 363189125.5 1224299.55 0.049333183 6.30E-11 10.20065387 -0.332446082 SKS(ph)EDMDNVQSK ddPTM_HeLa_A486_30min_R1 4 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.336)KS(0.664)EDMDNVQSK;SKS(1)EDMDNVQSK;S(0.028)KS(0.972)EDMDNVQSK;S(0.013)KS(0.987)EDMDNVQSK ;;; 279.91 3.69E-41 4630730000 6874700 5738600 2303930 3176320 4777020 7453900 9302000 8128600 4557720 10922600 TRUE FALSE FALSE 6392819.031 5283852.436 3196073.397 7394633.482 4177841.608 6534313.604 6974541.213 6277895.226 4952786.839 8187509.866 0.780801384 0.645355245 0.390359639 0.903160253 0.510270116 0.798083143 0.851851335 0.766764905 0.604919801 1 22.96499331 -6.311579389 24.55248296 0.792717221 0.646039662 0.19839544 0.1582754 546.391461 267554.2833 0.054196827 0.047797191 4.88E-07 6.311579389 -0.146677559 SKS(ph)EDMDNVQSKR ddPTM_HeLa_A485_30min_R1 1 SKSEDMDNVQSKR 13 2 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.166)KS(0.563)EDMDNVQS(0.271)KR 77.505 0.0047734 180830000 152600 171390 81854 147830 211410 214660 358350 432120 117880 216250 TRUE FALSE FALSE 186545.3435 191432.5696 112135.2008 155905.5786 190361.2781 225899.2657 281785.595 326141.8925 141537.4347 162342.8548 1.149082562 1.179186912 0.690730744 0.960347647 1.172587967 1.391494969 1.735743747 2.0089698 0.871842712 1 17.30868436 -6.15540106 2.611388606 1.492431301 0.99101113 0.229746152 0.33348248 0.353918974 4.708014728 0.121179926 0.120156898 6.99E-07 6.15540106 -0.501420171 SKS(ph)EDMDNVQSKR ddPTM_HeLa_A486_30min_R1 2 SKSEDMDNVQSKR 13 2 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.092)KS(0.908)EDMDNVQSKR;S(0.052)KS(0.948)EDMDNVQSKR ; 103.13 0.00024717 203268000 488570 315140 159197 234010 371400 350160 557490 565830 234400 707390 TRUE FALSE FALSE 454323.766 290167.1587 220842.3418 544787.1062 324815.5488 306960.8194 418000.1055 437002.861 254717.9807 530254.9397 0.856802515 0.547221981 0.416483328 1.027405999 0.612564871 0.578892899 0.788300257 0.824137275 0.480368897 1 19.01632663 -11.12872649 2.492803693 1.665549099 0.682104138 0.21886009 0.180592613 28251831.28 9608195.896 106056944.8 0.043930355 7.43E-12 11.12872649 -0.983444961 SKS(ph)EEAHAEDSVMDHHFR ddPTM_HeLa_A485_30min_R1 2 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.41)KS(0.59)EEAHAEDSVMDHHFR;S(0.446)KS(0.554)EEAHAEDSVMDHHFR ; 260.48 4.57E-58 3703500000 488350 574000 417680 600670 718940 567330 1012640 1074200 715270 916860 TRUE FALSE FALSE 596981.7727 641124.3069 572197.2131 633483.0811 647359.8092 597034.5215 796281.1915 810750.7657 858818.1282 688303.6756 0.867323238 0.931455591 0.831315063 0.920354058 0.940514823 0.867399874 1.156874821 1.1778969 1.247731428 1 19.39268569 -6.765603071 24.96779497 1.160450597 0.89539669 0.778430273 0.065815396 43.88572725 263158.9119 0.025535527 0.017913482 1.72E-07 6.765603071 -0.265053906 SKS(ph)EEAHAEDSVMDHHFR ddPTM_HeLa_A486_30min_R1 1 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.231)KS(0.769)EEAHAEDSVMDHHFR 273.01 3.28E-69 5531400000 1721500 1260200 795600 332440 1647500 2218200 2558700 2802700 1472000 2473900 TRUE FALSE FALSE 1600831.74 1160337.162 1103677.627 773937.1206 1440855.188 1944541.037 1918486.197 2164586.393 1599594.145 1854419.338 0.86325229 0.625714551 0.595160762 0.417347417 0.776984557 1.048598339 1.034548205 1.167258316 0.862584914 1 20.82253609 -6.107517196 3.784837064 1.032831827 0.620461147 0.69741616 0.123439648 0.132851127 3.411365866 0.042623039 0.043252224 7.81E-07 6.107517196 -0.41237068 SKS(ph)ETGDSSIFR ddPTM_HeLa_A485_30min_R1 2 SKSETGDSSIFR 12 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.057)KS(0.932)ET(0.011)GDSSIFR;S(0.132)KS(0.867)ETGDSSIFR ; 98.508 0.0006044 462040000 350660 287591 228752 441490 435010 385210 501270 502420 318440 688100 TRUE FALSE FALSE 428663.1072 321222.2657 313376.884 465607.4808 391698.877 405379 394169.5695 379200.7072 382347.9871 516569.3335 0.829826858 0.62183766 0.606650189 0.901345571 0.758269707 0.784752353 0.763052593 0.734075143 0.7401678 1 18.97860247 -14 0.322745816 3.429267391 0.7365108 0.450807987 0.082785193 319.6485849 2.822358863 531.0562807 0.076199984 1.00E-14 14 -2.692756592 SKS(ph)ETGDSSIFR ddPTM_HeLa_A486_30min_R1 2 SKSETGDSSIFR 12 1 O43166-2;O43166;O43166-3 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.011)KS(0.989)ETGDSSIFR;S(0.004)KS(0.993)ET(0.003)GDSSIFR ; 117.4 0.00010282 339490000 314300 308570 180363 154822 327000 383790 434600 425110 265290 426840 TRUE FALSE FALSE 292269.193 284117.7894 250204.3839 360433.4403 285984.6108 336441.8919 325858.4833 328321.7331 288285.5508 319956.4857 0.913465443 0.887988842 0.781995037 1.126507686 0.893823453 1.051523901 1.018446251 1.026144953 0.901014868 1 18.28751619 -5.250261179 24.99937555 1.001763415 0.863833687 0.453837559 0.071034355 661.9349095 1480375.151 0.018412568 0.031527489 5.62E-06 5.250261179 -0.137929728 SKS(ph)FSLR ddPTM_HeLa_A485_30min_R1 2 SKSFSLR 7 1 J3QQM5;Q9BT23 J3QQM5 LIMD2 LIM domain-containing protein 2 1 0 S(0.167)KS(0.829)FS(0.004)LR;S(0.211)KS(0.773)FS(0.016)LR ; 73.233 0.0089375 286179000 231040 263688 235210 224087 335080 282339 376880 421060 289879 357270 TRUE FALSE FALSE 282434.0509 294524.0178 322223.9669 236328.3054 301718.2587 297121.8335 296356.5092 317794.3748 348055.0564 268209.1641 1.053036543 1.098113179 1.201390594 0.881134342 1.124936427 1.107798962 1.104945501 1.184875155 1.29770009 1 18.03299901 -7.046418009 2.402731459 1.17974462 1.076725989 0.107171082 0.102248395 0.576358334 6.539704907 0.056290096 0.029699664 8.99E-08 7.046418009 -0.103018631 SKS(ph)FSLR ddPTM_HeLa_A486_30min_R1 3 SKSFSLR 7 1 J3QQM5;Q9BT23 J3QQM5 LIMD2 LIM domain-containing protein 2 1 0 S(0.017)KS(0.961)FS(0.022)LR;S(0.065)KS(0.933)FS(0.002)LR;S(0.171)KS(0.827)FS(0.002)LR ;; 83.883 0.0030299 299920000 634700 628350 404960 270654 619030 675920 766990 862250 513340 755040 TRUE FALSE FALSE 590210.8076 578557.2576 561771.3572 630096.1901 541385.4852 592531.8627 575080.9896 665934.4978 557836.7245 565973.0695 1.042824896 1.022234606 0.992576127 1.113297123 0.956556971 1.046925896 1.016092497 1.176618701 0.985624148 1 19.11037388 SKS(ph)HESQLGNR ddPTM_HeLa_A485_30min_R1 3 SKSHESQLGNR 11 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QLI1 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 S(0.001)KS(0.499)HES(0.499)QLGNR;SKS(0.935)HES(0.065)QLGNR;SKS(0.998)HES(0.002)QLGNR ;; 169.3 1.90E-08 1610969000 1184912 1792170 1316952 759176 1647792 1371963 1860190 1818560 1590669 1434232 TRUE FALSE FALSE 1448491.587 2001748.692 1804147.348 800647.8625 1483732.043 1443796.861 1462745.21 1372555.309 1909901.678 1076704.357 1.345301128 1.859144228 1.675619993 0.743609754 1.378031056 1.340940855 1.358539324 1.274774546 1.77384039 1 20.03819074 SKS(ph)HESQLGNR ddPTM_HeLa_A486_30min_R1 4 SKSHESQLGNR 11 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QLI1 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 S(0.009)KS(0.967)HES(0.024)QLGNR;SKS(0.985)HES(0.015)QLGNR;S(0.091)KS(0.897)HES(0.012)QLGNR;SKS(0.842)HES(0.157)QLGNR ;;; 147.56 3.90E-07 1152580000 1090515 771996 741146 34712.2 812414 945226 816092 678766 1086913 501703 TRUE FALSE FALSE 1014075.53 710820.2254 1028137.58 80811.75586 710513.4607 828613.6265 611897.1499 524225.7992 1181127.494 376073.3033 2.696483694 1.890110835 2.733875473 0.21488299 1.889295131 2.203330094 1.627068831 1.393945794 3.140684233 1 18.52065437 SKS(ph)LENFFLR ddPTM_HeLa_A485_30min_R1 4 SKSLENFFLR 10 1 Q6ZMT1;J3QKZ0 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 S(0.008)KS(0.992)LENFFLR;SKS(1)LENFFLR;S(0.324)KS(0.676)LENFFLR;S(0.06)KS(0.94)LENFFLR ;;; 152.16 1.53E-06 1812725000 1682411 1719449 1240533 2340860 2351974 1903067 2855488 3167148 1598351 2844904 TRUE FALSE FALSE 2056657.523 1920523.603 1699457.78 2468735.254 2117803.21 2002708.645 2245389.662 2390399.987 1919125.385 2135721.789 0.962980072 0.899238662 0.795729944 1.155925489 0.991610059 0.937719817 1.051349325 1.119246898 0.89858398 1 21.0262923 -5.250676053 24.99794053 1.023468036 0.887308478 0.36969997 0.081403663 791.4414849 1838127.556 0.021992169 0.037620355 5.61E-06 5.250676053 -0.136159558 SKS(ph)LENFFLR ddPTM_HeLa_A486_30min_R1 2 SKSLENFFLR 10 1 Q6ZMT1;J3QKZ0 Q6ZMT1 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 SKS(1)LENFFLR;SKS(1)LENFFLR ; 223.06 2.33E-17 2062720000 3284910 2826590 1591560 1401380 2836370 3109940 3818720 3789710 2350320 4131540 TRUE FALSE FALSE 3054654.772 2602600.714 2207854.655 3262483.462 2480606.026 2726267.222 2863235.866 2926875.762 2554047.63 3096975.492 0.986334822 0.840368521 0.712906725 1.053441808 0.800976964 0.880299902 0.924526485 0.945075532 0.82469094 1 21.56242854 -14 0.26986458 1.789867392 0.876019567 0.112977192 0.093215284 465.6522554 4.531343536 205.0008502 0.112817777 1.00E-14 14 -0.913847826 SKS(ph)LKEGLTVQER ddPTM_HeLa_A485_30min_R1 2 SKSLKEGLTVQER 13 2 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;Q6WCQ1-2;J3KSW8;Q6WCQ1-3 A0A494BZV2;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 SKS(1)LKEGLTVQER;S(0.001)KS(0.999)LKEGLTVQER ; 161.14 4.22E-12 659260000 472660 430000 284390 663490 845350 734480 1370660 1617110 504040 1002590 TRUE FALSE FALSE 577801.5863 480284.7595 389597.6955 699734.7787 761183.9858 772936.2371 1077807.294 1220511.237 605196.2047 752662.7643 0.767676593 0.638114149 0.51762584 0.929679017 1.011321434 1.026935666 1.431992314 1.621591096 0.804073529 1 19.52164407 -5.819602568 1.349990542 1.241237069 0.642657902 0.495262624 0.227842523 0.328874686 1.255195619 0.091418594 0.121758124 1.51E-06 5.819602568 -0.598579167 SKS(ph)LKEGLTVQER ddPTM_HeLa_A486_30min_R1 3 SKSLKEGLTVQER 13 2 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;Q6WCQ1-2;J3KSW8;Q6WCQ1-3 A0A494BZV2;Q6WCQ1-2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.45)KS(0.55)LKEGLTVQER;S(0.291)KS(0.709)LKEGLTVQER;S(0.001)KS(0.999)LKEGLTVQER ;; 191.97 6.18E-18 1710070000 1279650 924520 554580 847440 1440210 1463450 2296730 2200680 841680 1903370 TRUE FALSE FALSE 1189953.143 851257.6682 769328.2282 1972883.147 1259565.432 1282904.418 1722063.862 1699633.205 914637.5001 1426753.763 0.834028389 0.596639511 0.53921584 1.382777602 0.882819071 0.899177175 1.206980424 1.19125896 0.641061915 1 20.44430494 -5.236027306 24.96451205 1.033019253 0.65062904 0.408433233 0.205375519 731.4977345 718613.546 0.054812485 0.094892941 5.81E-06 5.236027306 -0.382390213 SKS(ph)NPDFLK ddPTM_HeLa_A485_30min_R1 4 SKSNPDFLK 9 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.013)KS(0.987)NPDFLK;S(0.003)KS(0.997)NPDFLK;S(0.026)KS(0.974)NPDFLK;SKS(1)NPDFLK ;;; 159 9.51E-06 2418600000 3348510 2228050 1575340 5112220 3280890 2979000 4830770 3949150 2627670 6963800 TRUE FALSE FALSE 4093374.497 2488601.066 2158123.821 5391487.634 2954233.072 3134975.834 3798636.526 2980614.77 3155019.267 5227852.819 0.782993447 0.476027377 0.412812659 1.031300578 0.56509492 0.59966796 0.726615048 0.570141294 0.60350193 1 22.31778709 -10.02772656 4.572575882 1.000011852 0.63782722 0.298070987 0.165255639 47640765.75 34825632.61 5496.74293 0.039517801 9.38E-11 10.02772656 -0.362184632 SKS(ph)NPDFLK ddPTM_HeLa_A486_30min_R1 3 SKSNPDFLK 9 1 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.003)KS(0.997)NPDFLK;SKS(1)NPDFLK;S(0.031)KS(0.969)NPDFLK ;; 166.6 4.41E-06 1475030000 3437900 3479300 1453460 1656420 2978260 4445700 5322100 4870000 3092330 5084600 TRUE FALSE FALSE 3196920.963 3203587.597 2016278.637 3856229.471 2604698.86 3897234.735 3990454.289 3761207.311 3360375.654 3811383.065 0.838782381 0.840531519 0.529014954 1.011766439 0.683399914 1.02252507 1.046983266 0.98683529 0.881668307 1 21.86188318 -6.273356571 24.56674015 0.99049091 0.782877695 0.417308182 0.122206878 602.3161325 1241643.041 0.041772102 0.037130361 5.33E-07 6.273356571 -0.207613214 SKS(ph)NPDFLKK ddPTM_HeLa_A485_30min_R1 2 SKSNPDFLKK 10 2 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.11)KS(0.89)NPDFLKK;S(0.066)KS(0.934)NPDFLKK ; 88.706 0.0024452 5853900000 2846510 1838580 1052255 3430060 2714700 2766450 5145930 4931110 2086670 5387080 TRUE FALSE FALSE 3479706.329 2053585.937 1441527.912 3617435.492 2444414.936 2911297.044 4046460.017 3721747.541 2505445.529 4044180.098 0.860423187 0.507787954 0.356445034 0.894479327 0.604427814 0.719873243 1.000563753 0.920272453 0.619518782 1 21.94741581 -6.566275145 6.257326073 0.877828954 0.637277719 0.292498001 0.176435724 0.255191932 24.96701537 0.068450958 0.053165865 2.71E-07 6.566275145 -0.240551234 SKS(ph)NPDFLKK ddPTM_HeLa_A486_30min_R1 2 SKSNPDFLKK 10 2 A0A494BZV2;H0Y2S9;H7C3G6;J3QL44;K7EL39;J3QRL2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.167)KS(0.833)NPDFLKK;S(0.011)KS(0.989)NPDFLKK ; 112.02 0.0004615 8538700000 4198600 3452900 1122910 1927490 2910300 4184400 5918000 5310000 2434900 5539400 TRUE FALSE FALSE 3904299.822 3179279.629 1557730.825 4487294.13 2545263.037 3668171.272 4437253.806 4101028.916 2645959.092 4152298.185 0.940274433 0.765667466 0.375149075 1.080677237 0.61297694 0.883407479 1.068626001 0.987652797 0.637227621 1 21.98547862 -6.503812809 23.59116226 0.930014676 0.752105649 0.135262341 0.204489906 728.8711399 901868.8468 0.071955354 0.062357357 3.13E-07 6.503812809 -0.177909027 SKS(ph)PAS(ph)VDR ddPTM_HeLa_A485_30min_R1 1 SKSPASVDR 9 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 2 0 S(0.314)KS(0.686)PAS(1)VDR 95.428 0.00046545 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SKS(ph)PAS(ph)VDR ddPTM_HeLa_A486_30min_R1 2 SKSPASVDR 9 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 2 0 S(0.11)KS(0.89)PAS(1)VDR;S(0.236)KS(0.764)PAS(1)VDR ; 99.834 0.00041689 204650000 1101120 1015060 577960 507970 964660 1171940 1360670 1292050 835020 1568000 TRUE FALSE FALSE 1023937.174 934622.9488 801761.5903 1182579.831 843663.3477 1027357.958 1020215.974 997878.4203 907400.2059 1175362.594 0.871167059 0.795178402 0.682139788 1.006140435 0.717789856 0.874077466 0.868001057 0.848996238 0.772017257 1 20.16467446 -11.18728783 2.200351335 1.448426379 0.826436643 0.265164778 0.08681285 8154418.669 1660645.77 18205872.75 0.020781888 6.50E-12 11.18728783 -0.621989736 SKS(ph)PASTSSVNGTPGSQLSTPR ddPTM_HeLa_A485_30min_R1 2 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2;Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 1 0 S(0.287)KS(0.71)PAS(0.001)T(0.001)SSVNGTPGSQLSTPR;S(0.052)KS(0.928)PAS(0.016)T(0.003)SSVNGTPGSQLSTPR ; 173.55 1.44E-14 830980000 289630 330040 233960 341830 365450 330220 471340 472950 279980 569260 TRUE FALSE FALSE 354057.1943 368635.307 320511.5399 360503.3073 329064.5148 347509.8086 370634.3585 356958.2709 336169.4179 427353.9585 0.828486989 0.862599491 0.749990806 0.843570769 0.770004602 0.813166233 0.867277233 0.835275452 0.786629938 1 18.70507196 -10.48306437 3.189066243 1.004083472 0.818026151 0.690921221 0.036628084 14123159.33 15707271.81 499506.9492 0.008971057 3.29E-11 10.48306437 -0.186057321 SKS(ph)PASTSSVNGTPGSQLSTPR ddPTM_HeLa_A486_30min_R1 3 SKSPASTSSVNGTPGSQLSTPR 22 1 O15075-2;O15075;Q5VZY9 O15075-2;Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 1 0 S(0.249)KS(0.746)PAS(0.002)T(0.003)S(0.001)SVNGTPGSQLSTPR;S(0.026)KS(0.936)PAS(0.006)T(0.014)S(0.014)S(0.005)VNGTPGSQLSTPR;S(0.03)KS(0.962)PAS(0.006)T(0.002)SSVNGTPGSQLSTPR ;; 225.8 2.05E-36 1846050000 894350 818230 576310 329992 959490 833670 1028000 1042650 739040 1071950 TRUE FALSE FALSE 831660.6834 753390.4749 799472.6661 768238.0529 839141.8173 730820.2715 770783.5269 805261.3559 803100.5822 803526.7428 1.035013073 0.93760473 0.994954646 0.956082744 1.044323446 0.909515804 0.959250621 1.00215875 0.999469637 1 19.61598651 -7.284849682 23.52675553 1.000610659 0.975104483 0.072407789 0.03885831 1043.01763 1048195.714 0.02045031 0.009835092 5.19E-08 7.284849682 -0.025506176 SKS(ph)PASVDR ddPTM_HeLa_A485_30min_R1 1 SKSPASVDR 9 1 Q13243-3;Q13243 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 1 0 S(0.011)KS(0.828)PAS(0.162)VDR 105.25 0.015683 164420000 381140 426800 288990 439520 400160 419560 599230 666230 361850 589650 TRUE FALSE FALSE 465923.2781 476710.5473 395899.4269 463529.8647 360318.6654 441527.5128 471199.6152 502836.0479 434469.9759 442661.1067 1.052550746 1.076919883 0.894362348 1.047143871 0.813983112 0.997439138 1.064470332 1.135939075 0.981495707 1 18.75584309 -6.670464505 5.33329402 1.056501418 0.975056952 0.124389093 0.083293397 0.385425427 17.62594185 0.032931447 0.025082436 2.14E-07 6.670464505 -0.081444465 SKS(ph)PCQTLGGR ddPTM_HeLa_A485_30min_R1 1 SKSPCQTLGGR 11 1 B4DFJ1;Q9BSI4-2;Q9BSI4 B4DFJ1 TINF2 TERF1-interacting nuclear factor 2 1 0 S(0.049)KS(0.95)PCQTLGGR 99.927 0.00025888 0 114430 113720 91610 121040 153850 121710 159900 176370 117590 167950 TRUE FALSE FALSE 139884.5587 127018.5648 125500.3512 127652.1087 138532.1538 128082.5474 125736.0587 133114.981 141189.2344 126083.1559 1.109462701 1.007418984 0.995377617 1.012443794 1.098736408 1.015857721 0.997247078 1.055771328 1.119810441 1 16.94401603 -7.512798462 24.82690683 1.069200434 1.031874493 0.048353566 0.046479845 1038.048606 2556666.153 0.027634333 0.011816347 3.07E-08 7.512798462 -0.037325941 SKS(ph)PCQTLGGR ddPTM_HeLa_A486_30min_R1 3 SKSPCQTLGGR 11 1 B4DFJ1;Q9BSI4-2;Q9BSI4 B4DFJ1 TINF2 TERF1-interacting nuclear factor 2 1 0 S(0.009)KS(0.991)PCQTLGGR;S(0.009)KS(0.987)PCQT(0.004)LGGR;S(0.004)KS(0.986)PCQT(0.01)LGGR ;; 104.41 0.00021543 435500000 284059 279189 173739 107262 299391 271142 324058 316666 225749 365360 TRUE FALSE FALSE 264147.931 257065.0469 241015.3937 249711.3567 261838.5891 237691.2568 242975.2609 244568.0646 245317.1051 273871.4779 0.964495949 0.938633876 0.880031011 0.911782996 0.956063739 0.867893432 0.887187168 0.893003048 0.895738056 1 18.0631395 -6.256556806 24.87797117 0.900728458 0.926859476 0.045844517 0.040036442 1040.319279 5300706.093 0.013112341 0.012737347 5.54E-07 6.256556806 0.026131017 SKS(ph)PIPGQGYLGTERPSSVSSVHSEGDYHR ddPTM_HeLa_A485_30min_R1 1 SKSPIPGQGYLGTERPSSVSSVHSEGDYHR 30 2 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KRE4 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.176)KS(0.824)PIPGQGYLGTERPSSVSSVHSEGDYHR 98.147 0.00016647 605240000 50481 74749 92708 27248 125890 81137 96106 83687 76087 65511 TRUE FALSE FALSE 61710.32429 83490.24532 127004.5471 28736.48924 113355.9496 85385.20786 75572.16799 63162.63203 91356.96299 49180.31334 1.254776965 1.69763549 2.582426554 0.584308787 2.304904989 1.736166406 1.536634536 1.284307231 1.85759213 1 15.58579331 -11.20051577 0.325644939 0.193313022 1.697249302 0.116192617 0.529171488 90.60493084 4.063703487 53.92748485 0.460668599 6.30E-12 11.20051577 1.50393628 SKS(ph)PIPGQGYLGTERPSSVSSVHSEGDYHR ddPTM_HeLa_A486_30min_R1 1 SKSPIPGQGYLGTERPSSVSSVHSEGDYHR 30 2 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KRE4 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.127)KS(0.873)PIPGQGYLGTERPSSVSSVHSEGDYHR 205.67 2.20E-29 640340000 262230 305590 245120 40391 386000 251620 300160 323510 308440 165020 TRUE FALSE FALSE 243849.0312 281373.9355 340037.0285 94032.28925 337584.2807 220577.6827 225056.7932 249853.8352 335175.8275 123697.9179 1.971326885 2.274686108 2.748930898 0.760176815 2.729102368 1.783196406 1.819406479 2.019870984 2.709631926 1 16.91646169 -10.80774143 2.795258665 0.687827419 2.076010491 0.249344888 0.567222469 76460498.43 75331966.21 164026152.4 0.135669352 1.56E-11 10.80774143 1.388183072 SKS(ph)PLPPEEEAK ddPTM_HeLa_A485_30min_R1 1 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.385)KS(0.615)PLPPEEEAK 125.41 2.04E-05 1133600000 1605500 1862200 450290 1197300 464100 1524800 1757000 2016900 560710 1253800 TRUE FALSE FALSE 1962637.936 2079968.091 616871.0091 1262705.467 417892.5744 1604636.17 1381602.597 1522252.113 673239.3539 941250.7345 2.085138278 2.209791732 0.655373735 1.341518706 0.443975828 1.704791414 1.467836939 1.617265259 0.715260376 1 19.84421956 -4.744829357 24.98293318 1.157623396 2.147465831 0.507830079 0.403802077 198.7251999 298895.3849 0.102760968 0.270222657 1.80E-05 4.744829357 0.989842434 SKS(ph)PLPPEEEAK ddPTM_HeLa_A486_30min_R1 1 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.007)KS(0.993)PLPPEEEAK 126.63 1.89E-05 534870000 2081200 1013800 190610 309210 343380 828970 996760 716270 573060 2596000 TRUE FALSE FALSE 1935318.627 933462.7958 264419.2967 719856.5066 300310.0785 726700.1097 747360.1053 553190.9571 622733.3022 1945944.703 0.994539374 0.479696465 0.135882225 0.369926497 0.154326111 0.373443351 0.384060299 0.284278868 0.320015929 1 20.89203928 -10.42707658 6.157180889 1.000186173 0.372650624 0.394732422 0.226417205 0.000588075 5.47E-05 0.222801476 0.054021643 3.74E-11 10.42707658 -0.627535549 SKS(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_A485_30min_R1 3 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.04)KS(0.959)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.16)KS(0.84)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.132)KS(0.868)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ;; 440.48 6.96E-276 15189200000 639800 413696 231755.5 1157189 676688 600287 1282321 1149676 454745 1791882 TRUE FALSE FALSE 782121.3027 462074.1485 317491.5036 1220403.305 609314.5667 631717.0991 1008342.643 867716.1584 546008.1503 1345198.795 0.581416892 0.343498783 0.236018278 0.907228961 0.452955035 0.469608731 0.749586341 0.645046786 0.405894023 1 20.35938796 -14 0.163156373 2.710877984 0.417218642 0.355334896 0.188189516 150.7242395 1.39654236 83.82958389 0.770553782 1.00E-14 14 -2.293659342 SKS(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_A486_30min_R1 3 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.024)KS(0.976)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.101)KS(0.899)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK;S(0.032)KS(0.968)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ;; 303.2 9.53E-95 6770000000 1302906 963634 282523 479493 775502 1336412 2056620 1673830 767631 2400310 TRUE FALSE FALSE 1211579.018 887272.1323 391923.4718 1116283.936 678231.3079 1171539.075 1542031.923 1292735.448 834169.8731 1799256.753 0.673377502 0.493132584 0.217825205 0.620413921 0.37695082 0.651123901 0.857038286 0.718483033 0.463619143 1 20.77896964 -6.453130202 5.293249579 0.739052487 0.472463984 0.376792743 0.171841755 0.249009189 13.15205652 0.061438592 0.053151208 3.52E-07 6.453130202 -0.266588503 SKS(ph)PPKS(ph)PEEEGAVSS ddPTM_HeLa_A485_30min_R1 1 SKSPPKSPEEEGAVSS 16 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 2 0 S(0.075)KS(0.926)PPKS(0.999)PEEEGAVSS 102.64 0.0093104 217520000 446430 239480 113140 1254900 339950 342070 821150 567430 200770 1642800 TRUE FALSE FALSE 545736.8133 267485.1028 154995.1941 1323452.009 306103.3844 359980.2563 645704.5943 428266.9028 241062.6974 1233280.193 0.442508374 0.216889158 0.125677194 1.073115433 0.248202627 0.29188846 0.523566824 0.347258397 0.195464663 1 20.23406918 -10.0826209 4.151999766 1.000093014 0.388832691 0.341444119 0.256200556 443196931.2 935242430.4 589374.5453 0.062362653 8.27E-11 10.0826209 -0.611260323 SKS(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_A486_30min_R1 1 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(0.205)KS(0.758)PPKVPIVIQDDS(0.037)LPAGPPPQIR 142.9 3.94E-09 660870000 209120 204080 97548 129460 168820 290300 334690 325770 201010 399800 TRUE FALSE FALSE 194461.7679 187907.9576 135321.198 301389.4225 147645.0214 254485.7376 250947.022 251599.2825 218433.7086 299687.4777 0.64888186 0.627013044 0.451541049 1.005679065 0.492663299 0.849170407 0.837362388 0.839538857 0.728871658 1 18.19309928 -4.187569368 0.091727319 1.217755161 1.33E-08 0.335672468 0.149050868 79.55752897 1.146755263 3.699340626 13.8701068 6.49E-05 4.187569368 -1.217755147 SKS(ph)PS(ph)PLK ddPTM_HeLa_A485_30min_R1 1 SKSPSPLK 8 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 0 S(0.079)KS(0.921)PS(1)PLK 58.676 0.0047655 0 487740 289340 183930 1126700 412340 351260 710710 460780 311110 1387100 TRUE FALSE FALSE 596236.0803 323175.7961 251973.361 1188248.768 371285.9818 369651.4304 558861.0025 347772.9825 373546.9233 1041321.498 0.572576367 0.310351603 0.241974608 1.141096934 0.356552691 0.354983001 0.536684399 0.333972729 0.358723914 1 19.98998412 -10.14986099 4.095435679 1.000158369 0.467540138 0.298548819 0.24489771 308220003.4 545227218.8 697224.8028 0.0632391 7.08E-11 10.14986099 -0.53261823 SKS(ph)PS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 SKSPSPLK 8 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 0 S(0.165)KS(0.84)PS(0.995)PLK;S(0.068)KS(0.932)PS(1)PLK ; 77.64 0.012078 395850000 1190340 949510 325350 885500 630260 1449790 1852060 1443250 842310 2747900 TRUE FALSE FALSE 1106903.313 874267.3695 451334.2332 2061488.751 551206.9139 1270929.65 1388654.999 1114653.481 915322.109 2059807.954 0.537381803 0.424441205 0.219114715 1.000815997 0.267601119 0.617013663 0.674167218 0.541144372 0.444372548 1 20.9740784 -14 0.276761412 4.352991408 0.496316442 0.314500174 0.208953018 269.9861675 2.603204014 519.5663703 0.239525123 1.00E-14 14 -3.856674966 SKS(ph)PS(ph)PPR ddPTM_HeLa_A485_30min_R1 3 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.313)KS(0.688)PS(0.999)PPR;S(0.023)KS(0.977)PS(1)PPR;S(0.293)KS(0.707)PS(1)PPR ;; 95.483 0.0033199 3522510000 1353800 1101060 855730 2223050 1407090 1153670 1712490 1344880 1003710 2885520 TRUE FALSE FALSE 1654948.139 1229819.389 1172300.137 2344489.592 1266995.179 1214074.377 1346602.522 1015046.071 1205145.39 2166212.968 0.763982196 0.567727831 0.541174923 1.082298752 0.584889481 0.56045938 0.621639027 0.468580923 0.556337446 1 21.04674366 -10.20035244 4.978783584 1.000037869 0.6372953 0.301716225 0.164945556 7.14E-05 1.15E-05 0.164574771 0.039911086 6.30E-11 10.20035244 -0.362742569 SKS(ph)PS(ph)PPR ddPTM_HeLa_A486_30min_R1 6 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.378)KS(0.622)PS(1)PPR;S(0.336)KS(0.664)PS(1)PPR;S(0.303)KS(0.697)PS(1)PPR;S(0.232)KS(0.768)PS(1)PPR;S(0.395)KS(0.605)PS(1)PPR;S(0.376)KS(0.625)PS(1)PPR ;;;;; 97.734 0.0028938 5553260000 2877560 2746070 1387570 1675570 2182860 3227470 3850190 3348300 2267500 4806620 TRUE FALSE FALSE 2675857.904 2528461.412 1924874.264 3900811.639 1909065.344 2829297.566 2886831.739 2585965.183 2464048.726 3603011.066 0.742672685 0.701763432 0.534240453 1.082653249 0.529852756 0.785259194 0.801227553 0.717723353 0.683885972 1 21.78077165 -10.21181423 4.396441675 1.000091321 0.732075175 0.23316032 0.146324073 0.000124109 2.22E-05 0.133562738 0.032382656 6.14E-11 10.21181423 -0.268016146 SKS(ph)PS(ph)PPRLTEDR ddPTM_HeLa_A485_30min_R1 1 SKSPSPPRLTEDR 13 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.433)KS(0.567)PS(0.661)PPRLT(0.339)EDR 65.716 0.0080597 0 319140 420130 328100 456630 625690 541790 815170 1020200 359510 667470 TRUE FALSE FALSE 390131.592 469260.5489 449477.8434 481574.5407 563394.1067 570157.2866 641002.2702 769994.3504 431660.3594 501082.0129 0.77857832 0.936494499 0.897014524 0.961069303 1.12435508 1.137852232 1.27923624 1.536663322 0.861456505 1 18.93468723 -5.736176922 1.435044327 1.207771141 0.865320172 0.362433713 0.170981616 0.40134971 1.722508327 0.063235352 0.089802625 1.84E-06 5.736176922 -0.342450969 SKS(ph)PSPPR ddPTM_HeLa_A485_30min_R1 4 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.198)KS(0.798)PS(0.004)PPR;S(0.004)KS(0.979)PS(0.017)PPR;S(0.198)KS(0.8)PS(0.002)PPR;S(0.003)KS(0.692)PS(0.305)PPR ;;; 105.86 0.00068637 1097870000 517446 568570 401323 648070 620020 587260 782140 867050 525451 833680 TRUE FALSE FALSE 632550.0775 635059.3156 549789.0781 683472.4231 558288.6318 618008.0255 615029.3995 654404.628 630904.196 625858.9187 1.010691162 1.014700433 0.87845529 1.092055098 0.892035913 0.98745581 0.982696549 1.045610454 1.008061365 1 19.25547796 -7.134351114 6.885779925 1.019953178 0.978064288 0.0821255 0.058321541 0.604748242 31.06955883 0.026299107 0.0151065 7.34E-08 7.134351114 -0.041888891 SKS(ph)PSPPR ddPTM_HeLa_A486_30min_R1 4 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.001)KS(0.855)PS(0.144)PPR;S(0.003)KS(0.991)PS(0.007)PPR;S(0.049)KS(0.893)PS(0.058)PPR;S(0.008)KS(0.661)PS(0.332)PPR ;;; 111.27 0.00056776 1082580000 587440 490481 370333 250808 525799 686710 711760 606310 549422 788060 TRUE FALSE FALSE 546263.4895 451613.4993 513735.8555 583893.6991 459848.3865 601990.7022 533670.1198 468266.4487 597046.3413 590724.6466 0.924734549 0.76450763 0.869670596 0.988436326 0.778447944 1.019071585 0.903416038 0.792698343 1.010701593 1 19.17212628 -13.99999825 0.073021119 1.391528828 0.758158498 0.161936049 0.086933269 545.0580048 2.846006694 35.02576508 3.990053606 1.00E-14 13.99999825 -0.63337033 SKS(ph)PSPPRLT(ph)EDR ddPTM_HeLa_A486_30min_R1 1 SKSPSPPRLTEDR 13 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 2 0 S(0.419)KS(0.59)PS(0.305)PPRLT(0.686)EDR 68.82 0.0022244 0 1513100 1368200 901230 1160000 1859800 1622400 2525500 2486100 1026700 2724300 TRUE FALSE FALSE 1407039.504 1259778.849 1250210.392 2700538.623 1626526.542 1422244.783 1893593.188 1920069.301 1115695.183 2042117.548 0.689010045 0.616898303 0.612212746 1.322420752 0.796490165 0.696455885 0.927269437 0.940234466 0.546342293 1 20.96163448 SKS(ph)PT(ph)LR ddPTM_HeLa_A486_30min_R1 1 SKSPTLR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.171)KS(0.84)PT(0.99)LR 98.044 0.0036475 0 500440 408980 185260 325130 339170 550090 695170 587750 328820 918270 TRUE FALSE FALSE 465361.7403 376570.9353 256997.6334 756919.0712 296628.136 482225.4887 521231.1132 453932.1555 357322.3824 688329.2151 0.67607437 0.547079693 0.373364413 1.099646876 0.430939338 0.700573909 0.757241015 0.659469547 0.519115526 1 19.39273922 -11.13098348 2.440759863 1.745565725 0.64290673 0.239953765 0.191956802 16661090.08 3253656.348 69118963.04 0.045875884 7.40E-12 11.13098348 -1.102658995 SKS(ph)PTISDK ddPTM_HeLa_A485_30min_R1 5 SKSPTISDK 9 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 S(0.107)KS(0.61)PT(0.187)IS(0.096)DK;S(0.018)KS(0.623)PT(0.358)IS(0.001)DK;S(0.156)KS(0.635)PT(0.209)ISDK;S(0.003)KS(0.983)PT(0.014)ISDK;S(0.054)KS(0.916)PT(0.03)ISDK ;;;; 118.76 0.00025327 4248900000 2833080 2056190 1324320 4248970 2709720 2550540 4048170 3403270 2149140 5537540 TRUE FALSE FALSE 3463288.872 2296643.534 1814241.078 4481080.472 2439930.762 2684082.331 3183245.409 2568612.696 2580452.685 4157133.189 0.833095481 0.552458492 0.436416394 1.077925645 0.586926291 0.645657045 0.765730917 0.61788078 0.620728894 1 21.98715754 -10.38903945 5.462853969 1.000147442 0.679219276 0.244029549 0.167922127 0.000295157 3.30E-05 0.159146731 0.038581152 4.08E-11 10.38903945 -0.320928166 SKS(ph)PTISDK ddPTM_HeLa_A486_30min_R1 3 SKSPTISDK 9 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 S(0.001)KS(0.999)PTISDK;S(0.004)KS(0.957)PT(0.039)ISDK;S(0.016)KS(0.951)PT(0.032)ISDK ;; 141.58 5.91E-05 4761800000 2561590 2029850 879900 1144840 1685700 2654060 3325690 2803020 1844860 3638370 TRUE FALSE FALSE 2382035.769 1868997.293 1220620.845 2665245.377 1474263.787 2326629.062 2493567.186 2164833.535 2004773.95 2727298.47 0.873404871 0.685292539 0.447556752 0.977247414 0.540558286 0.85308927 0.914299338 0.793764804 0.735076843 1 21.37904116 -6.398797513 24.46878917 0.849813186 0.703790457 0.198305877 0.154668163 22.20042256 4287.733011 0.053013256 0.046753268 3.99E-07 6.398797513 -0.146022729 SKS(ph)PVGNPQLIQFSR ddPTM_HeLa_A485_30min_R1 1 SKSPVGNPQLIQFSR 15 1 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.014)KS(0.986)PVGNPQLIQFSR 129.75 7.28E-06 0 233060 311440 252410 320830 362820 289370 484550 580330 280030 386790 TRUE FALSE FALSE 284903.393 347860.1988 345786.9627 338356.1305 326696.3669 304520.9657 381021.9341 438003.1576 336229.4524 290370.3713 0.981172396 1.197987926 1.190847954 1.165257078 1.12510228 1.048732914 1.312192881 1.508429237 1.157933059 1 18.14753473 -6.773605254 24.9976488 1.287007936 1.127568038 0.141072118 0.136649953 332.6435553 683487.9425 0.055070872 0.037434629 1.68E-07 6.773605254 -0.159439898 SKS(ph)PVGNPQLIQFSR ddPTM_HeLa_A486_30min_R1 1 SKSPVGNPQLIQFSR 15 1 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.04)KS(0.96)PVGNPQLIQFSR 196.98 1.64E-25 2071000000 220530 201420 134650 96692 231760 232110 311110 278070 190260 289120 TRUE FALSE FALSE 205071.9858 185458.7456 186790.0861 225103.8625 202690.4997 203474.6281 233266.9874 214759.5312 206751.89 216722.4701 0.946242379 0.855743041 0.861886107 1.038673389 0.935253735 0.938871858 1.076339649 0.990942615 0.953993787 1 17.72548922 -5.252433512 24.9883443 0.98931804 0.884735757 0.500997006 0.046890059 545.9723346 1514891.386 0.01304317 0.022158736 5.59E-06 5.252433512 -0.104582283 SKS(ph)QSSGSSATHPISVPGAR ddPTM_HeLa_A485_30min_R1 1 SKSQSSGSSATHPISVPGAR 20 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.113)KS(0.887)QSSGSSATHPISVPGAR 138.23 8.04E-08 977550000 1080900 1587300 1384600 665550 2191600 1528400 2117200 2231300 1526700 1351000 TRUE FALSE FALSE 1321342.476 1772920.927 1896821.158 701907.3112 1973396.609 1608424.661 1664842.924 1684070.176 1833094.686 1014220.563 1.302815703 1.748062494 1.870225498 0.692065746 1.945727271 1.585872658 1.641499871 1.660457535 1.807392546 1 19.95194 SKS(ph)QSSGSSATHPISVPGAR ddPTM_HeLa_A486_30min_R1 1 SKSQSSGSSATHPISVPGAR 20 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.132)KS(0.852)QS(0.011)S(0.003)GS(0.001)SATHPISVPGAR 147.12 1.84E-13 0 737100 692840 482840 0 780780 534170 633200 609770 643630 339290 TRUE FALSE FALSE 685433.0964 637936.8351 669808.5789 0 682847.2919 468269.5364 474766.6627 470938.6822 699420.3666 254329.5756 2.695058547 2.508307709 2.633624412 0 2.684891406 1.841191829 1.866737919 1.851686659 2.750055179 1 17.95633971 -1 0.046298202 2.76E-12 5.490114068 0.114350484 0.800576869 1571.014325 5.521551061 163.1802514 635.3215488 0.1 1 5.490114068 SKS(ph)TEDGAELEEQKLQEETITFFDAR ddPTM_HeLa_A486_30min_R1 1 SKSTEDGAELEEQKLQEETITFFDAR 26 2 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 S(0.164)KS(0.803)T(0.034)EDGAELEEQKLQEETITFFDAR 242.57 7.11E-50 34282000 24333 19089 9253.7 22782 21094 39416 59797 59406 22713 67833 TRUE FALSE FALSE 22627.38236 17576.31812 12836.98046 53037.64734 18448.19383 34553.25467 44835.15813 45880.55062 24681.78113 50847.17528 0.445007657 0.345669509 0.252462018 1.043079523 0.362816493 0.679551115 0.881763006 0.902322506 0.485411058 1 15.63388001 -4.754540895 0.277564226 0.91770147 5.82E-17 0.342551056 0.22883089 7.63412149 0.609469826 0.301303145 2.348954593 1.76E-05 4.754540895 -0.91770147 SKS(ph)VIEQVSWDT ddPTM_HeLa_A486_30min_R1 1 SKSVIEQVSWDT 12 1 Q6WCQ1;H0Y7E2 Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.159)KS(0.841)VIEQVSWDT 96.464 0.019727 544700000 896670 1000600 668760 497090 1030600 1079000 1498600 1389100 847410 1197900 TRUE FALSE FALSE 833818.0634 921308.8119 927721.782 1157250.642 901332.538 945883.9505 1123634.429 1072832.254 920864.1811 897938.043 0.928591978 1.026027151 1.033169036 1.288786738 1.003780322 1.053395563 1.251349621 1.194773139 1.025531982 1 19.77625638 -4.716356569 2.127568321 1.123516746 0.946529708 0.243725555 0.099168426 0.465559672 3.945749565 0.027542441 0.110792958 1.92E-05 4.716356569 -0.176987038 SKS(ph)YDEGLDDYREDAK ddPTM_HeLa_A485_30min_R1 2 SKSYDEGLDDYREDAK 16 2 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.16)KS(0.84)YDEGLDDYREDAK;S(0.09)KS(0.91)YDEGLDDYREDAK ; 178.19 4.82E-14 782970000 967820 641510 372460 1577790 883270 890260 1513910 1489760 609550 2057680 TRUE FALSE FALSE 1183108.22 716529.0141 510248.4534 1663980.673 795328.5375 936872.637 1190450.761 1124394.024 731881.0939 1544738.245 0.765895597 0.463851411 0.330313861 1.077192643 0.514862981 0.606492809 0.770648856 0.727886442 0.473789716 1 20.55893096 -11.41374798 2.10464597 3.690242579 0.637766233 0.227558283 0.200757832 6033513.644 454771.0137 77549751.6 0.04978506 3.86E-12 11.41374798 -3.052476346 SKS(ph)YDEGLDDYREDAK ddPTM_HeLa_A486_30min_R1 2 SKSYDEGLDDYREDAK 16 2 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.138)KS(0.862)YDEGLDDYREDAK;S(0.043)KS(0.957)YDEGLDDYREDAK ; 214.65 9.14E-27 941270000 1750300 1433710 525230 996110 1247550 2049180 2661050 2442120 1286760 3787200 TRUE FALSE FALSE 1627613.009 1320097.598 728613.1221 2318994.421 1091070.646 1796373.006 1995227.144 1886102.587 1398297.393 2838860.469 0.573333218 0.46500968 0.256656898 0.816875097 0.384334016 0.632779605 0.702826774 0.66438721 0.492555872 1 21.43688051 -14 0.146190574 2.565299478 0.409733673 0.45247648 0.151226644 121.8287497 1.069330274 55.39073404 0.808300531 1.00E-14 14 -2.155565805 SKS(ph)YNTPLLNPVQEHEAEGAAAGGTSIR ddPTM_HeLa_A486_30min_R1 1 SKSYNTPLLNPVQEHEAEGAAAGGTSIR 28 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 0 S(0.376)KS(0.463)YNT(0.16)PLLNPVQEHEAEGAAAGGTSIR 94.642 0.0011317 410250000 61498 73590 68394 35201 94458 76886 102460 80234 57539 88761 TRUE FALSE FALSE 57187.30778 67758.46039 94877.98845 81949.70696 82610.19685 67400.58704 76823.42429 61966.4697 62526.52685 66534.66786 0.859511434 1.018393306 1.425993268 1.231684317 1.241611321 1.013014556 1.154637526 0.931341084 0.939758608 1 16.02181863 -7.259501916 24.38480263 0.951662374 1.144816696 0.235217243 0.146190578 182.9055142 2302088.728 0.07843801 0.042285063 5.50E-08 7.259501916 0.193154323 SKSDGEAKPEPS(ph)PSPR ddPTM_HeLa_A485_30min_R1 1 SKSDGEAKPEPSPSPR 16 2 P26358;K7EJL0;K7ERQ1;K7ENQ6 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 SKSDGEAKPEPS(0.5)PS(0.5)PR 50.425 0.022043 116930000 59440 50243 31347 72811 66659 64262 88122 96098 43761 103090 TRUE FALSE FALSE 72662.22293 56118.48179 42943.55976 76788.48056 60022.19591 67626.65895 69294.01481 72529.81482 52543.4313 77391.56023 0.938890788 0.725124053 0.554886859 0.992207423 0.775565136 0.873824726 0.895369141 0.937179902 0.678929733 1 16.23988862 -5.2793676 24.93655842 0.872548618 0.738182873 0.205872572 0.124982968 1243.226387 1729214.456 0.034478949 0.051257451 5.26E-06 5.2793676 -0.134365745 SKSDGEAKPEPSPS(ph)PR ddPTM_HeLa_A485_30min_R1 5 SKSDGEAKPEPSPSPR 16 2 P26358;K7EJL0;K7ERQ1;K7ENQ6 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 SKSDGEAKPEPS(0.001)PS(0.999)PR;SKSDGEAKPEPS(0.067)PS(0.933)PR;SKSDGEAKPEPS(0.001)PS(0.999)PR;SKSDGEAKPEPSPS(1)PR;SKSDGEAKPEPS(0.024)PS(0.976)PR ;;;; 149.71 2.41E-08 1680690000 2098590 1866910 1040598 2496710 2214110 2422050 3368590 3669550 1708110 3824200 TRUE FALSE FALSE 2565414.105 2085228.885 1425558.503 2633098.945 1993665.434 2548864.793 2648863.228 2769587.109 2050912.009 2870897.319 0.893593124 0.726333495 0.49655503 0.917169321 0.694439826 0.887828616 0.922660386 0.964711308 0.714380133 1 21.4530703 -6.277593502 19.75112306 0.8972574 0.740240636 0.258653931 0.128755166 74.97544632 91667.63672 0.044827168 0.039786673 5.28E-07 6.277593502 -0.157016764 SKSDGEAKPEPSPS(ph)PR ddPTM_HeLa_A486_30min_R1 6 SKSDGEAKPEPSPSPR 16 2 P26358;K7EJL0;K7ERQ1;K7ENQ6 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 SKSDGEAKPEPS(0.003)PS(0.997)PR;SKSDGEAKPEPS(0.013)PS(0.987)PR;SKSDGEAKPEPS(0.001)PS(0.999)PR;SKSDGEAKPEPS(0.001)PS(0.999)PR;SKSDGEAKPEPS(0.002)PS(0.998)PR;SKSDGEAKPEPS(0.002)PS(0.998)PR ;;;;; 159.77 5.93E-10 1279320000 2338350 1723510 705607 871884 1537120 1847050 2372940 2234310 1378750 2778110 TRUE FALSE FALSE 2174443.74 1586932.791 978836.9272 2029790.015 1344320.077 1619179.75 1779205.314 1725606.388 1498261.16 2082453.174 1.044174135 0.762049688 0.470040306 0.974711 0.645546365 0.777534771 0.854379506 0.828641148 0.719469316 1 20.98985262 -10.31453966 5.619066258 1.000030865 0.780662985 0.148720776 0.152863548 5.75E-05 7.01E-06 0.143895356 0.034894845 4.85E-11 10.31453966 -0.21936788 SKSDS(ph)YTLDPDTLR ddPTM_HeLa_A485_30min_R1 1 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 SKS(0.215)DS(0.491)YT(0.294)LDPDTLR 251.04 4.27E-35 997150000 503450 535620 387760 598500 671050 664180 829260 875960 506730 898880 TRUE FALSE FALSE 615440.7156 598256.0997 531208.56 631194.5395 604237.9058 698955.4378 652081.8266 661129.4365 608426.063 674805.7587 0.912026472 0.886560454 0.787202174 0.935372189 0.89542494 1.035787601 0.966325225 0.97973295 0.901631403 1 19.36411276 -5.852012898 2.085735201 0.973171655 0.868439154 0.466663564 0.048724804 0.278034353 2.479677036 0.016815486 0.020390583 1.41E-06 5.852012898 -0.104732501 SKSEEAHAEDSVMDHHFR ddPTM_HeLa_A485_30min_R1 3 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ;; ;; 138.07 8.87E-07 1792530000 1627160 2390450 1779640 1123300 2485620 1778350 2472190 3395120 1816650 2095630 FALSE FALSE TRUE 1989116.128 2669992.333 2438002.893 1184663.035 2238142.945 1871461.656 1943986.411 2562461.497 2181234.992 1573228.008 1.264353366 1.697142639 1.549681852 0.753014203 1.42264372 1.189567975 1.235667303 1.628792192 1.386470989 1 20.58529635 SKSEEAHAEDSVMDHHFR ddPTM_HeLa_A486_30min_R1 3 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51;Q8NC51-2;Q8NC51-3;Q8NC51-4 Q8NC51;Q8NC51-3 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ;; ;; 148.24 1.34E-08 1029070000 2692690 1411233 1474250 143694.4 2443080 1629843 1964509 1874896 1198227 1543125 FALSE FALSE TRUE 2503946.336 1299401.757 2045119.082 334527.8251 2136646.126 1428769.542 1472968.07 1448023.109 1302090.281 1156716.456 2.164701923 1.12335374 1.768038374 0.289204691 1.847164977 1.235194273 1.273404612 1.251839292 1.125678012 1 20.14160383 -2.492354871 1.538077015 1.218242763 199.6301082 0.321883982 0.407273532 362.9955525 5.224111255 0.106197869 250409.9367 0.003218438 2.492354871 198.4118654 SKSHES(ph)QLGNR ddPTM_HeLa_A485_30min_R1 4 SKSHESQLGNR 11 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QLI1 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 SKS(0.09)HES(0.91)QLGNR;S(0.002)KS(0.002)HES(0.996)QLGNR;SKS(0.037)HES(0.963)QLGNR;S(0.004)KS(0.004)HES(0.991)QLGNR ;;; 196.74 1.15E-12 1547102000 1234924 1754865 1326120 714884.4 1531705 1457077 1799860 1860636 1564959 1432115.1 TRUE FALSE FALSE 1509628.583 1960081.196 1816706.972 753936.7246 1379203.072 1533367.299 1415305.207 1404312.104 1879031.917 1075115.162 1.404155236 1.823136038 1.689778953 0.701261364 1.282842175 1.426235396 1.316421959 1.306196911 1.747749435 1 20.03605977 SKSHES(ph)QLGNR ddPTM_HeLa_A486_30min_R1 2 SKSHESQLGNR 11 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87;J3QLI1 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 SKS(0.102)HES(0.898)QLGNR;S(0.001)KS(0.43)HES(0.569)QLGNR ; 183 8.28E-11 872120000 1075390 810290 787250 36567 844530 965160 905160 757290 1152780 494970 TRUE FALSE FALSE 1000010.714 746079.6694 1092094.283 85129.82399 738601.1725 846088.3722 678679.3942 584871.5985 1252703.899 371026.2903 2.695255675 2.010853918 2.943441777 0.229444183 1.990697672 2.280400054 1.82919489 1.576361605 3.376321116 1 18.50116189 SKSPLPPEEEAKDEEEDQTLVNLDT(ph)YTSDLHFQVSK ddPTM_HeLa_A485_30min_R1 1 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.079)KS(0.079)PLPPEEEAKDEEEDQT(0.096)LVNLDT(0.216)Y(0.101)T(0.216)S(0.216)DLHFQVSK 48.281 0.017795 222280000 110210 65886 41538 43797 55917 155670 102940 182970 81563 50768 TRUE FALSE FALSE 134725.8343 73590.79457 56904.63474 46189.51921 50349.70714 163820.6405 80946.02806 138096.3206 97931.94596 38112.47192 3.53495398 1.930884849 1.493071215 1.211926618 1.321082171 4.298347293 2.123872423 3.623389239 2.569551148 1 15.21797556 -6.206022843 24.99998466 2.849557464 1.839535552 0.133651683 1.019274885 505.5022038 228046.2308 0.326800773 0.326800647 6.22E-07 6.206022843 -1.010021911 SKSPS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.001)KS(0.105)PS(0.894)PPR;S(0.001)KS(0.188)PS(0.811)PPR ; 96.171 0.0014061 1192330000 332620 350220 267730 401040 395940 355720 478350 472300 315980 534790 TRUE FALSE FALSE 406610.1715 391175.1825 366774.4682 422947.7997 356518.8234 374344.9492 376146.6147 356467.6845 379394.2877 401476.6951 1.012786487 0.974340945 0.913563533 1.053480326 0.888018726 0.932420122 0.936907719 0.887891349 0.944997038 1 18.61495672 -5.785003107 24.99999196 0.926396215 0.982172815 0.274082986 0.044335418 303.0982243 321571.1718 0.013172935 0.014945242 1.64E-06 5.785003107 0.055776599 SKSPS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 SKSPSPPR 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.006)KS(0.165)PS(0.828)PPR;S(0.003)KS(0.486)PS(0.511)PPR;S(0.002)KS(0.203)PS(0.794)PPR ;; 90.05 0.0019169 1360510000 532030 461580 268311 193850 404450 500530 605560 538360 398720 638640 TRUE FALSE FALSE 494737.4444 425002.7198 372208.2048 451292.5966 353720.1097 438779.6976 454042.483 415787.1803 433281.3706 478720.3872 1.033458064 0.887789054 0.777506484 0.942706032 0.738886664 0.916567812 0.948450275 0.868538695 0.905082345 1 18.86882372 -6.483651658 24.99773268 0.92141236 0.870224758 0.085070223 0.082475987 1476.624401 940990.269 0.028906102 0.025488674 3.28E-07 6.483651658 -0.051187602 SKSQSS(ph)GSSATHPISVPGAR ddPTM_HeLa_A485_30min_R1 1 SKSQSSGSSATHPISVPGAR 20 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.022)KS(0.159)QS(0.314)S(0.446)GS(0.059)S(0.001)ATHPISVPGAR 141.64 1.82E-10 0 78456 112620 106440 50802 145900 113430 144210 155310 109790 104190 TRUE FALSE FALSE 95908.26653 125789.9293 145816.5853 53577.18462 131373.6837 119369.0194 113398.3554 117219.979 131823.8459 78217.35047 1.226176366 1.608210053 1.86424859 0.68497826 1.679597722 1.526119444 1.449785178 1.498644205 1.685352996 1 16.25520105 -10.09191761 4.716030616 0.999983909 1.470027113 0.173352844 0.307397151 202021070.9 0.741592972 53797.26719 0.072346683 8.09E-11 10.09191761 0.470043204 SKT(ph)EEDILR ddPTM_HeLa_A485_30min_R1 2 SKTEEDILR 9 1 Q63HQ0-2;Q63HQ0 Q63HQ0-2 AP1AR AP-1 complex-associated regulatory protein 1 0 S(0.017)KT(0.983)EEDILR;S(0.116)KT(0.884)EEDILR ; 117.7 0.00067829 283190000 328340 247772 148357 495250 278256 366990 710990 680340 340650 1201100 TRUE FALSE FALSE 401378.1002 276746.7801 203240.4279 522304.2535 250551.8556 386205.0289 559081.1782 513485.5483 409015.3304 901687.8746 0.445140843 0.306920818 0.225399979 0.579251721 0.277869829 0.428313433 0.620038479 0.569471502 0.453610769 1 19.7822686 -14 0.146912963 3.071945562 0.243059407 0.722639248 0.111341451 69.74513565 0.61381059 41.87191387 0.599060913 1.00E-14 14 -2.828886155 SKT(ph)EEDILR ddPTM_HeLa_A486_30min_R1 3 SKTEEDILR 9 1 Q63HQ0-2;Q63HQ0 Q63HQ0-2 AP1AR AP-1 complex-associated regulatory protein 1 0 S(0.057)KT(0.943)EEDILR;S(0.005)KT(0.995)EEDILR;S(0.041)KT(0.959)EEDILR ;; 155.08 5.05E-05 385414000 902400 756210 335431 347551 641440 878960 1002200 917320 717290 1578250 TRUE FALSE FALSE 839146.42 696285.1655 465318.8664 809116.2923 560984.614 770522.8518 751438.9598 708466.261 779465.2747 1183045.927 0.709310096 0.588552946 0.393322741 0.683926358 0.474186674 0.65130426 0.635173109 0.59884933 0.658863073 1 20.17407465 -9.427819004 0.486833665 1.07316525 0.572395856 0.650430602 0.089572966 4.874105322 1.073012862 0.698862645 0.045151149 3.73E-10 9.427819004 -0.500769393 SKT(ph)FDWAEFRPIQQALAQER ddPTM_HeLa_A485_30min_R1 3 SKTFDWAEFRPIQQALAQER 20 2 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.029)KT(0.971)FDWAEFRPIQQALAQER;S(0.085)KT(0.915)FDWAEFRPIQQALAQER;S(0.14)KT(0.86)FDWAEFRPIQQALAQER ;; 203.72 1.16E-25 10868800000 294802 251177 203552.3 314071 367915.1 316610 474736 469127 271168 450587 TRUE FALSE FALSE 360379.6878 280549.9652 278854.7663 331227.9035 331284.1808 333187.21 373304.7754 354072.8677 325588.9303 338263.9533 1.06538011 0.829381796 0.824370328 0.979199528 0.979365899 0.98499177 1.103590175 1.046735439 0.962529194 1 18.36778992 -5.72672121 1.928671022 1.024721848 0.9013767 0.283185089 0.073124095 0.387435932 2.967984253 0.025487868 0.034197574 1.88E-06 5.72672121 -0.123345148 SKT(ph)FDWAEFRPIQQALAQER ddPTM_HeLa_A486_30min_R1 3 SKTFDWAEFRPIQQALAQER 20 2 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.249)KT(0.751)FDWAEFRPIQQALAQER;S(0.34)KT(0.66)FDWAEFRPIQQALAQER;S(0.029)KT(0.971)FDWAEFRPIQQALAQER ;; 201.21 2.83E-26 7432992000 589824 568540 336493 251884 602540 642460 885646 798908 492085 730106 TRUE FALSE FALSE 548480.3835 523486.8198 466792.1012 586398.6815 526963.8147 563199.8173 664048.0034 617014.0884 534739.324 547282.7054 1.002188408 0.956519939 0.852926827 1.071473072 0.962873136 1.029083893 1.213354628 1.127413825 0.977080618 1 19.06192674 -6.524815417 24.98991941 1.094528547 0.970541041 0.293106602 0.079503499 73.57130532 949298.3417 0.030500628 0.023791421 2.99E-07 6.524815417 -0.123987505 SKT(ph)FNPGAGLPTDKK ddPTM_HeLa_A486_30min_R1 1 SKTFNPGAGLPTDKK 15 2 P09661;H0YMA0;H0YLR3 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 1 0 S(0.446)KT(0.554)FNPGAGLPTDKK 105.79 0.00029997 246970000 585550 508620 199820 1211000 463980 719410 966660 906220 440430 1201900 TRUE FALSE FALSE 544505.9688 468315.0988 277195.6554 2819269.201 405783.302 630656.5086 724791.4437 699893.4886 478606.827 900936.4169 0.604377799 0.519809267 0.307675048 3.129265448 0.450401709 0.700001129 0.804486787 0.776851147 0.531232635 1 19.78106577 SKT(ph)PLVAR ddPTM_HeLa_A485_30min_R1 3 SKTPLVAR 8 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.345)KT(0.655)PLVAR;S(0.083)KT(0.917)PLVAR;S(0.083)KT(0.917)PLVAR ;; 118.28 0.0010105 1437460000 1003772 883318 605052 1470014 1182120 1188434 1850330 1964287 743593 1885821 TRUE FALSE FALSE 1227057.618 986614.3563 828885.9131 1550317.143 1064423.982 1250658.567 1454991.88 1482542.533 892825.2945 1415720.531 0.866737179 0.696899095 0.585486962 1.095072869 0.751860243 0.883407805 1.027739478 1.047199996 0.630650807 1 20.43310507 -5.252925975 24.97208326 0.917416715 0.714426891 0.283854089 0.147759246 817.8744146 2399038.615 0.039609712 0.067207217 5.59E-06 5.252925975 -0.202989824 SKT(ph)PLVAR ddPTM_HeLa_A486_30min_R1 4 SKTPLVAR 8 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.018)KT(0.982)PLVAR;S(0.208)KT(0.792)PLVAR;S(0.321)KT(0.679)PLVAR;S(0.025)KT(0.975)PLVAR ;;; 129.89 0.00065769 1596140000 1712270 1727370 835508 826226 1549000 1720770 2096020 2052840 1273180 2484690 TRUE FALSE FALSE 1592248.715 1590486.91 1159039.073 1923495.883 1354709.976 1508478.893 1571573.627 1585453.145 1383540.268 1862507.451 0.854895219 0.853949287 0.622300368 1.032745336 0.727358151 0.809918313 0.843794544 0.851246605 0.74283744 1 20.82881477 -10.18695749 4.614937361 1.000032484 0.816424953 0.229781614 0.10135033 129498234.5 2.698608518 44701.2562 0.02297127 6.50E-11 10.18695749 -0.183607531 SKT(ph)PPKSYSTAR ddPTM_HeLa_A485_30min_R1 3 SKTPPKSYSTAR 12 2 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 S(0.014)KT(0.973)PPKS(0.004)YS(0.004)T(0.004)AR;S(0.011)KT(0.988)PPKSYSTAR;S(0.056)KT(0.936)PPKS(0.003)YS(0.004)TAR ;; 70.167 0.011935 15017650000 1554520 1324370 779490 1892050 1814250 1776440 2797720 2910040 1244270 2625190 TRUE FALSE FALSE 1900317.611 1479243.551 1067855.788 1995407.901 1633616.9 1869451.652 2199964.267 2196348.127 1493983.576 1970778.446 0.964247206 0.750588456 0.541844666 1.012497323 0.828919609 0.948585395 1.116292027 1.114457148 0.758067747 1 20.91033417 -5.820693554 1.450706818 0.999132058 0.769830687 0.245974169 0.149796263 0.532627073 2.33611379 0.058677869 0.076835916 1.51E-06 5.820693554 -0.229301371 SKT(ph)PPKSYSTAR ddPTM_HeLa_A486_30min_R1 1 SKTPPKSYSTAR 12 2 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 S(0.452)KT(0.546)PPKSYS(0.002)TAR 76.391 0.0082347 1244800000 359020 287660 131000 153780 252480 338170 459340 438220 218220 474580 TRUE FALSE FALSE 333854.552 264864.774 181726.7083 358007.6116 220811.6041 296450.0237 344408.2736 338446.8723 237135.4853 355742.079 0.938473607 0.744541592 0.510838383 1.00636847 0.620707015 0.83332853 0.968140386 0.951382736 0.666593859 1 18.44047211 -6.519206747 24.79463964 0.893657346 0.758928557 0.13634319 0.156866306 283.847186 1916667.545 0.057584124 0.045612877 3.03E-07 6.519206747 -0.134728789 SKT(ph)PSRQSHS(ph)SSSPHPK ddPTM_HeLa_A485_30min_R1 1 SKTPSRQSHSSSSPHPK 17 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.403)KT(0.504)PS(0.064)RQS(0.07)HS(0.281)S(0.251)S(0.225)S(0.202)PHPK 52.03 0.037775 43837000 62026 103970 63556 29969 121820 95180 129120 163300 78696 58045 TRUE FALSE FALSE 75823.46971 116128.3871 87068.00919 31606.13058 109691.1731 100163.4776 101532.4572 123250.419 94489.56536 43575.44974 1.740050193 2.664995721 1.998097775 0.725319664 2.517270016 2.298621775 2.330038079 2.828437106 2.168412855 1 15.41122793 SKT(ph)PSS(ph)PCPASK ddPTM_HeLa_A485_30min_R1 1 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 2 0 S(0.404)KT(0.596)PS(0.176)S(0.825)PCPASK 83.966 0.0033009 132040000 436550 330240 212760 699330 502160 405990 655330 624060 302620 931870 TRUE FALSE FALSE 533659.0414 368858.6953 291468.7777 737532.6271 452163.1872 427247.0086 515313.3919 471008.3065 363353.0582 699571.9588 0.762836524 0.527263408 0.416638737 1.054262707 0.646342641 0.610726321 0.736612418 0.673280712 0.5193934 1 19.41611294 -10.73278302 2.92317957 1.055947394 0.661976398 0.276202787 0.164711472 97435969.98 81004539.63 39476013.13 0.04227691 1.85E-11 10.73278302 -0.393970996 SKT(ph)PVQAAAVSIVEKPVTR ddPTM_HeLa_A485_30min_R1 1 SKTPVQAAAVSIVEKPVTR 19 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.238)KT(0.762)PVQAAAVSIVEKPVTR 139.75 5.94E-07 360950000 173990 136900 89556 260750 236630 198150 273690 311040 158200 379560 TRUE FALSE FALSE 212693.4752 152909.2641 122686.4911 274994.1122 213070.2863 208524.8276 215213.8957 234756.9523 189949.2889 284942.6773 0.746443029 0.536631668 0.430565517 0.965085732 0.74776544 0.731813253 0.755288389 0.823874312 0.666622812 1 18.12031219 -14 0.042330033 2.26465843 6.66E-10 0.318321425 0.135211214 924.6457912 2.910853859 145.0168987 40.61559953 1.00E-14 14 -2.264658429 SKTDGS(ph)QKTESSTEGKEQEEK ddPTM_HeLa_A485_30min_R1 1 SKTDGSQKTESSTEGKEQEEK 21 3 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 SKTDGS(0.997)QKT(0.001)ES(0.002)STEGKEQEEK 125.78 1.58E-06 40651000 73035 37112 20256 192850 74474 84252 220260 202670 47065 289320 TRUE FALSE FALSE 89281.38378 41451.92557 27749.53732 203384.9072 67059.10707 88663.30444 173199.6516 152964.8647 56510.51379 217197.8485 0.411060166 0.190848693 0.127761566 0.936403876 0.308746645 0.408214469 0.797428026 0.704265101 0.260179897 1 17.72865029 -11.48862495 0.096450475 2.029226627 1.09E-14 0.323953959 0.248454555 121.949255 1.443539735 33.77308487 5.886535701 3.25E-12 11.48862495 -2.029226627 SKTDGS(ph)QKTESSTEGKEQEEK ddPTM_HeLa_A486_30min_R1 1 SKTDGSQKTESSTEGKEQEEK 21 3 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.308)KT(0.308)DGS(0.382)QKT(0.001)ESSTEGKEQEEK 74.274 0.0046545 79186000 87568 49192 12031 120070 45845 100550 205400 174160 41010 271820 TRUE FALSE FALSE 81429.9354 45293.84677 16689.7254 279529.028 40094.69261 88145.16332 154006.7475 134507.5699 44564.77982 203754.5027 0.399647293 0.222296176 0.081910953 1.371891292 0.196779419 0.432604738 0.755844634 0.660145263 0.218718012 1 17.63647242 -14 0.085313697 2.37782066 0.09875693 0.146289267 0.361096624 483.1831317 2.884925812 128.4755874 10.27752835 1.00E-14 14 -2.27906373 SKTDNSSLS(ph)SPLNPK ddPTM_HeLa_A485_30min_R1 2 SKTDNSSLSSPLNPK 15 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 S(0.001)KT(0.001)DNS(0.019)S(0.015)LS(0.544)S(0.421)PLNPK;SKTDNSS(0.002)LS(0.573)S(0.425)PLNPK ; 85.146 0.00090271 335240000 912780 840420 474640 1020680 1209130 994650 1471830 1903040 766420 1679010 TRUE FALSE FALSE 1115824.762 938699.8083 650229.0874 1076437.164 1088744.772 1046728.336 1157361.497 1436316.456 920233.464 1260463.707 0.885249417 0.744725773 0.515864982 0.854000919 0.863765268 0.830431158 0.918202952 1.13951433 0.730075336 1 20.26552315 -6.07308351 1.19685359 0.950602257 0.727082136 0.294868334 0.132739422 0.564869978 1.687229861 0.0624037 0.066781873 8.45E-07 6.07308351 -0.223520121 SKTDNSSLS(ph)SPLNPK ddPTM_HeLa_A486_30min_R1 2 SKTDNSSLSSPLNPK 15 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 SKTDNSSLS(0.598)S(0.402)PLNPK;SKTDNSSLS(0.592)S(0.408)PLNPK ; 115.15 7.56E-05 301470000 1205600 883620 469830 485590 976570 1129460 1513720 1334660 788540 1703710 TRUE FALSE FALSE 1121093.666 813598.7331 651760.7585 1130478.06 854079.4844 990118.7087 1134971.246 1030787.053 856891.2821 1277089.927 0.877850214 0.637072391 0.510348367 0.885198479 0.668770042 0.775292865 0.888716778 0.807137408 0.670971765 1 20.28442869 -6.270099607 1.321622296 0.827578181 0.698726976 0.155376633 0.129450238 0.874976167 3.099738893 0.062366088 0.055839846 5.37E-07 6.270099607 -0.128851205 SKTPS(ph)SPCPASK ddPTM_HeLa_A485_30min_R1 1 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 SKT(0.001)PS(0.636)S(0.362)PCPASK 134.85 8.44E-06 1190600000 756770 722430 423930 800220 837660 910920 1385500 1484800 663290 1181300 TRUE FALSE FALSE 925110.8757 806911.9042 580759.3482 843933.9923 754259.6292 958614.3626 1089476.607 1120650.472 796406.2189 886823.6502 1.043173438 0.909889925 0.654875801 0.951636768 0.850518171 1.080952636 1.228515507 1.263667778 0.898043505 1 19.75828772 -6.325909547 4.710168029 1.123106092 0.874556031 0.375359825 0.134835462 0.215799685 9.621300954 0.048918484 0.043355405 4.72E-07 6.325909547 -0.248550061 SKTPS(ph)SPCPASK ddPTM_HeLa_A486_30min_R1 1 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 S(0.066)KT(0.066)PS(0.546)S(0.322)PCPASK 53.995 0.021067 233490000 268750 232230 126550 128450 234950 257550 315950 326980 217450 376190 TRUE FALSE FALSE 249912.0128 213827.249 175553.5491 299038.0915 205480.3802 225776.0996 236895.9682 252533.7919 236298.7411 281989.5754 0.886245573 0.758280687 0.62255333 1.060457966 0.728680767 0.800654064 0.84008768 0.895543006 0.837969775 1 18.1052823 -9.52192169 0.265247131 1.085910462 0.785913426 0.206752888 0.108072193 16.16905826 1.333312731 1.327783723 0.167828503 3.01E-10 9.52192169 -0.299997036 SKTPSRQS(ph)HS(ph)SSSPHPK ddPTM_HeLa_A485_30min_R1 1 SKTPSRQSHSSSSPHPK 17 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.199)KT(0.237)PS(0.114)RQS(0.475)HS(0.431)S(0.397)S(0.077)S(0.071)PHPK 50.883 0.029633 38305000 30377 48323 30538 12750 57634 45384 64021 73426 30450 28366 TRUE FALSE FALSE 37134.25885 53973.9545 41835.27699 13446.50022 51895.75659 47760.23606 50342.39035 55418.15837 36561.0357 21294.87824 1.743811748 2.534597939 1.964569909 0.631442926 2.437006496 2.242803905 2.364060963 2.602417246 1.71689339 1 14.37821886 SKTPSS(ph)PCPASK ddPTM_HeLa_A485_30min_R1 1 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 SKT(0.001)PS(0.044)S(0.955)PCPASK 113.11 0.00016451 1086200000 698070 654500 420550 763100 826950 854810 1226500 1414300 620080 1185700 TRUE FALSE FALSE 853353.2632 731038.0816 576128.9455 804786.2207 744615.9544 899566.5298 964448.2554 1067440.707 744524.3683 890126.8112 0.958687293 0.821274084 0.647243672 0.904125357 0.836527948 1.010604914 1.083495344 1.199200714 0.836425056 1 19.76365136 -6.286416063 3.080079472 1.0474044 0.822800116 0.417367746 0.112748128 0.241092566 4.659147381 0.04178937 0.038179534 5.17E-07 6.286416063 -0.224604284 SKTPSS(ph)PCPASK ddPTM_HeLa_A486_30min_R1 2 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 SKTPS(0.044)S(0.956)PCPASK;SKTPS(0.186)S(0.814)PCPASK ; 127.32 1.80E-05 2000180000 3151900 2532400 1239570 1286410 2591000 2835700 3538900 3491000 2371100 4052200 TRUE FALSE FALSE 2930968.086 2331723.401 1719564.701 2994827.492 2266012.62 2485860.165 2653429.789 2696175.508 2576628.857 3037502.745 0.964926893 0.767644871 0.566111324 0.985950547 0.746011711 0.818389438 0.873556343 0.887628995 0.848272108 1 21.53445428 -8.192631828 0.439190764 1.008114594 0.791545082 0.195062877 0.111763286 2.387110293 1.076862722 0.171747932 0.075754114 6.42E-09 8.192631828 -0.216569512 SKTS(ph)PVVSGSSSK ddPTM_HeLa_A486_30min_R1 1 SKTSPVVSGSSSK 13 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.208)KT(0.26)S(0.532)PVVSGSSSK 99.496 0.00041242 415870000 663180 568390 260670 304900 570890 678080 837720 813090 476400 858760 TRUE FALSE FALSE 616694.5067 523348.7064 361608.405 709822.6088 499283.6529 594425.3838 628113.5955 627967.1566 517694.7356 643720.9064 0.958015346 0.813005607 0.561747182 1.102686897 0.77562131 0.92342097 0.975754538 0.97552705 0.804222343 1 19.2960758 -5.272732905 24.99937505 0.930084287 0.781130985 0.249449549 0.126098566 1060.221548 2346907.508 0.034974156 0.052405097 5.34E-06 5.272732905 -0.148953302 SKVGS(ph)TENIK ddPTM_HeLa_A485_30min_R1 5 SKVGSTENIK 10 1 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 S(0.01)KVGS(0.905)T(0.086)ENIK;SKVGS(0.5)T(0.5)ENIK;SKVGS(0.733)T(0.267)ENIK;SKVGS(0.5)T(0.5)ENIK;SKVGS(0.963)T(0.037)ENIK ;;;; 167.61 1.77E-07 18658950000 10952010 7622460 4894196 13357640 9822730 9858280 15440160 13050090 7575820 18443540 TRUE FALSE FALSE 13388246.84 8513840.39 6704762.765 14087334.05 8844744.512 10374444.3 12141243.68 9849534.966 9096217.584 13845904.91 0.966946323 0.614899528 0.484241573 1.017436863 0.638798589 0.749278893 0.876883365 0.711368093 0.656960859 1 23.72295601 -10.99494475 2.782479893 1.249335443 0.742451446 0.19016416 0.156873849 75379244.86 71077850.28 120621644.6 0.037724903 1.01E-11 10.99494475 -0.506883997 SKVGS(ph)TENIK ddPTM_HeLa_A486_30min_R1 5 SKVGSTENIK 10 1 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 SKVGS(0.784)T(0.216)ENIK;SKVGS(0.988)T(0.012)ENIK;SKVGS(0.5)T(0.5)ENIK;SKVGS(0.737)T(0.263)ENIK;SKVGS(0.5)T(0.5)ENIK ;;;; 174.44 6.60E-08 17273060000 8467100 7216610 2924264 3657050 5939470 8358610 11114000 9884620 5863900 12101610 TRUE FALSE FALSE 7873600.014 6644739.541 4056617.335 8513797.217 5194486.289 7327409.682 8333159.648 7634107.806 6372187.573 9071288.088 0.867969349 0.732502317 0.447193088 0.938543362 0.572629404 0.807758458 0.91863025 0.841568224 0.702456753 1 23.11287599 -6.509144216 24.07461282 0.853994492 0.708756949 0.197477038 0.146381036 691.4026204 1211932.632 0.051544157 0.043559377 3.10E-07 6.509144216 -0.145237543 SKVGS(ph)TENIKHQPGGGR ddPTM_HeLa_A485_30min_R1 1 SKVGSTENIKHQPGGGR 17 2 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 SKVGS(0.993)T(0.007)ENIKHQPGGGR 115.39 4.64E-05 1196400000 310450 687550 319420 139640 645550 822510 1072700 2055500 384180 332900 TRUE FALSE FALSE 379508.5315 767952.9916 437586.7502 147268.1796 581276.7753 865575.3518 843508.8818 1551385.402 461281.4021 249914.1566 1.518555558 3.072867108 1.75094823 0.58927506 2.325905756 3.463490679 3.37519448 6.20767316 1.845759394 1 17.9310731 -6.173258031 3.779946444 3.523509084 1.797440474 0.169701959 1.401321816 0.345579853 9.237138877 0.472649114 0.468520802 6.71E-07 6.173258031 -1.726068611 SKVGST(ph)ENIK ddPTM_HeLa_A485_30min_R1 1 SKVGSTENIK 10 1 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 SKVGS(0.222)T(0.778)ENIK 117.08 0.00048544 316940000 254400 217530 109590 364060 284930 266470 360890 313000 206820 476380 TRUE FALSE FALSE 310990.4023 242968.2412 150131.9014 383947.676 256561.3688 280421.9572 283782.9033 236236.2592 248326.8769 357627.2331 0.869593738 0.679389651 0.419799969 1.073597423 0.717398858 0.784118018 0.793515921 0.660565632 0.694373509 1 18.44809708 -11.350979 2.144937922 2.464351152 0.741336575 0.192553442 0.157456604 12680338.65 1143175.799 90372041.99 0.039296047 4.46E-12 11.350979 -1.723014577 SKVGST(ph)ENIK ddPTM_HeLa_A486_30min_R1 1 SKVGSTENIK 10 1 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 SKVGS(0.188)T(0.812)ENIK 125.36 0.00013474 4265900000 3647100 2934600 1102900 1464100 2407500 3259700 4427200 4148300 2461100 4814100 TRUE FALSE FALSE 3391457.124 2702051.608 1529972.417 3408498.792 2105528.901 2857551.356 3319467.734 3203822.647 2674430.13 3608618.025 0.939821588 0.748777396 0.42397738 0.94454408 0.583472367 0.791868615 0.919872292 0.887825374 0.741123087 1 21.78301501 -6.532312208 8.723159049 0.875023291 0.720721917 0.186626231 0.155406057 0.263549948 165.6890469 0.057517253 0.045603415 2.94E-07 6.532312208 -0.154301375 SKVS(ph)SPIEK ddPTM_HeLa_A486_30min_R1 1 SKVSSPIEK 9 1 Q06190 Q06190 PPP2R3A Serine/threonine-protein phosphatase 2A regulatory subunit B subunit alpha 1 0 S(0.077)KVS(0.623)S(0.3)PIEK 64.55 0.0048496 0 242410 175260 94473 103140 186940 229650 280780 260560 142760 374760 TRUE FALSE FALSE 225418.3108 161371.7593 131055.4757 240115.1324 163492.2421 201318.1179 210525.8742 201236.176 155134.5517 280917.6567 0.802435537 0.574445057 0.466526302 0.854752724 0.581993471 0.716644586 0.749422007 0.716352893 0.552242082 1 18.09978778 -11.158435 2.473245967 1.819041933 0.667781794 0.424147156 0.11594231 25952028.74 5291893.93 119489147.2 0.029954881 6.94E-12 11.158435 -1.151260139 SKVSSSSGTTPFSSAAALPPGSYAS(ph)LGR ddPTM_HeLa_A485_30min_R1 1 SKVSSSSGTTPFSSAAALPPGSYASLGR 28 1 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 SKVSSSSGTTPFSSAAALPPGS(0.006)Y(0.001)AS(0.993)LGR 120.99 2.55E-05 397880000 232610 304420 195380 192810 389960 280260 471910 622090 213470 248810 TRUE FALSE FALSE 284353.292 340019.2709 267659.1924 203342.7221 351134.2132 294933.9802 371082.5733 469521.4521 256311.4709 186786.246 1.522345987 1.820365676 1.432970565 1.088638625 1.879871889 1.578991958 1.986669689 2.513683219 1.372218118 1 17.5110287 SKYDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_A485_30min_R1 2 SKYDEIFYNLAPADGKLSGSK 21 2 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 SKYDEIFYNLAPADGKLS(0.857)GS(0.143)K;SKYDEIFYNLAPADGKLS(0.992)GS(0.008)K ; 177.14 1.05E-14 1199020000 751040 354066 234730 1085230 572500 607930 1130060 1158300 410431 1625770 TRUE FALSE FALSE 918106.2569 395470.9387 321566.3949 1144513.367 515499.8898 639760.2748 888613.4493 874225.1089 492800.737 1220495.459 0.752240617 0.324024916 0.263472013 0.937744879 0.422369363 0.524180791 0.728075998 0.716287064 0.403771053 1 20.2190355 -14 0.21137919 3.086845769 0.502477746 0.276814438 0.206890086 194.207716 1.937497528 172.1689398 0.435302013 1.00E-14 14 -2.584368023 SKYDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_A486_30min_R1 1 SKYDEIFYNLAPADGKLSGSK 21 2 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 SKYDEIFYNLAPADGKLS(0.782)GS(0.218)K 100.27 0.00018481 5256800000 179740 147410 44970 114190 122370 225660 269960 257910 110710 300590 TRUE FALSE FALSE 167141.1542 135728.6947 62383.58834 265840.0908 107021.2135 197820.3635 202413.1527 199189.5231 120306.4319 225320.3075 0.741793565 0.6023811 0.276866249 1.179831919 0.474973671 0.877951773 0.898335152 0.884028277 0.533935149 1 17.78161782 -5.249560015 24.99842276 0.820102374 0.546550427 0.269898516 0.221425848 1076.860194 2266094.526 0.057926504 0.099324676 5.63E-06 5.249560015 -0.273551947 SLAALDALNT(ph)DDENDEEEYEAWK ddPTM_HeLa_A485_30min_R1 6 SLAALDALNTDDENDEEEYEAWK 23 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK ;;;;; 298.45 4.12E-89 1146094000 288092 298430 241535 362075 365958 334123 461643 464270 298801 486050 TRUE FALSE FALSE 352177.0715 333328.7925 330888.8476 381854.2404 329521.9366 351617.1636 363009.2018 350407.0546 358767.6199 364886.6801 0.965168341 0.913513183 0.906826326 1.046500904 0.903080201 0.96363387 0.994854626 0.960317473 0.983230245 1 18.47708896 -5.837561418 0.22261146 1.004640217 0.909351266 0.160498927 0.039903838 10.56997701 0.955370684 0.09099871 0.296943693 1.45E-06 5.837561418 -0.095288951 SLAALDALNT(ph)DDENDEEEYEAWK ddPTM_HeLa_A486_30min_R1 5 SLAALDALNTDDENDEEEYEAWK 23 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 SLAALDALNT(0.972)DDENDEEEY(0.028)EAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK ;;;; 263.92 2.83E-61 1459384000 326223 331225 204671.3 153635.7 338477 356091 438731 420424 260552 465990 TRUE FALSE FALSE 303356.4523 304977.5247 283925.5086 357671.6739 296022.0585 312160.1129 328955.8634 324702.633 283136.8571 349303.0709 0.868462025 0.873102901 0.812834276 1.023958 0.847464804 0.893665527 0.941749131 0.929572798 0.81057649 1 18.4141198 SLAGS(ph)SGPGASSGTSGDHGELVVR ddPTM_HeLa_A485_30min_R1 2 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;E9PQ49;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7 P29692-2 EEF1D Elongation factor 1-delta 1 0 S(0.047)LAGS(0.736)S(0.158)GPGAS(0.052)S(0.006)GTSGDHGELVVR;S(0.002)LAGS(0.365)S(0.365)GPGAS(0.267)S(0.001)GTSGDHGELVVR ; 264.32 1.07E-61 472230000 105826 165614 164260 131897 215569 126201 191200 235456 172292 193787 TRUE FALSE FALSE 129366.6286 184981.1166 225026.6094 139102.1991 194106.1935 132808.6892 150348.558 177710.0468 206869.424 145479.4673 0.889243211 1.271527317 1.546792916 0.956163792 1.334251473 0.912903324 1.033469264 1.221547275 1.421983651 1 17.15045602 SLAGSS(ph)GPGASSGTSGDHGELVVR ddPTM_HeLa_A486_30min_R1 1 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;E9PQ49;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7 P29692-2 EEF1D Elongation factor 1-delta 1 0 SLAGS(0.155)S(0.64)GPGAS(0.199)S(0.006)GTSGDHGELVVR 180.65 1.63E-20 273800000 95449 103070 78536 23798 115370 106300 115360 107810 100500 124370 TRUE FALSE FALSE 88758.518 94902.35783 108947.2425 55402.94668 100899.2188 93185.78678 86495.70785 83264.01648 109211.4209 93226.94249 0.952069387 1.017971364 1.168624 0.594280422 1.082296771 0.999558543 0.927797325 0.893132546 1.171457714 1 16.50845933 -7.755386605 24.99743925 1.085728862 0.956590652 0.112488936 0.147383191 296.1957356 1223302.112 0.102979821 0.036670135 1.76E-08 7.755386605 -0.12913821 SLAGSSGPGAS(ph)SGTSGDHGELVVR ddPTM_HeLa_A485_30min_R1 1 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;E9PQ49;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7 P29692-2 EEF1D Elongation factor 1-delta 1 0 S(0.005)LAGS(0.257)S(0.257)GPGAS(0.408)S(0.067)GT(0.004)S(0.002)GDHGELVVR 117.83 8.31E-05 144400000 32377 48185 34158 29117 58978 34601 60369 48808 38896 54254 TRUE FALSE FALSE 39579.15195 53819.8166 46794.46563 30707.58798 53105.94324 36412.65486 47470.66998 36837.76147 46702.07042 40729.47627 0.971756958 1.321397217 1.148909093 0.753940163 1.303870025 0.894012352 1.165511426 0.904449672 1.146640583 1 15.31378564 -5.031708466 24.99737254 1.025998672 1.168721299 0.099374321 0.167398318 1232.075334 971305.982 0.041972821 0.072792305 9.30E-06 5.031708466 0.142722627 SLAGSSGPGASSGTSGDHGELVVR ddPTM_HeLa_A485_30min_R1 2 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;E9PQ49;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7 P29692-2 EEF1D Elongation factor 1-delta 0 0 ; ; 364.61 3.01E-154 44455000 12807.6 20736.7 23879.3 8865.2 29571 16678.7 22414.1 25631 20412 17409.8 FALSE FALSE TRUE 15656.60643 23161.67668 32713.24677 9349.483428 26626.80741 17551.97094 17625.14443 19344.95706 24508.50117 13069.85726 1.197917171 1.772144578 2.502953637 0.715347019 2.037268416 1.342935167 1.348533811 1.480119995 1.875192718 1 13.67395577 -5.257481656 24.9999559 1.441960378 1.819118988 0.145927215 0.462719891 742.9958938 4693300.96 0.123378591 0.203876294 5.53E-06 5.257481656 0.377158609 SLAGSSGPGASSGTSGDHGELVVR ddPTM_HeLa_A486_30min_R1 1 SLAGSSGPGASSGTSGDHGELVVR 24 0 P29692-2;P29692;E9PRY8;A0A087X1X7;E9PK01;E9PQ49;E9PI39;E9PPR1;E9PL12;E9PMW7;E9PIZ1;H0YCK7 P29692-2 EEF1D Elongation factor 1-delta 0 0 47.728 0.034478 7697100 4543.4 4789.3 4163.5 1431.9 7097 4776 5976.2 6411.7 4815 5715.4 FALSE FALSE TRUE 4224.931122 4409.778426 5775.718702 3333.535564 6206.828083 4186.785679 4480.89155 4951.895876 5232.368077 4284.226639 0.986159575 1.029305589 1.348135659 0.778095055 1.448762777 0.977255881 1.045904414 1.155843585 1.221309823 1 12.06481909 -4.541528965 24.91347334 1.123640811 0.99694574 0.061750871 0.181371233 539.4908172 720665.4539 0.042996088 0.113796941 2.87E-05 4.541528965 -0.12669507 SLAPDRS(ph)DDEHDPLDNTSRPR ddPTM_HeLa_A485_30min_R1 6 SLAPDRSDDEHDPLDNTSRPR 21 2 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR ;;;;; 186.13 1.31E-19 13302430000 2283066 3163230 3143610 2306190 3849210 3054300 3487760 3902210 3070060 3381180 TRUE FALSE FALSE 2790926.155 3533142.232 4306562.156 2432171.32 3465969.137 3214218.425 2742571.584 2945186.879 3686192.882 2538314.052 1.099519641 1.391924781 1.696623061 0.958183767 1.365461116 1.26628083 1.080469764 1.160292548 1.452220965 1 21.27543915 -5.272780374 24.89888896 1.196717987 1.395612747 0.194935327 0.196805493 1188.282082 2608844.091 0.054846864 0.082195877 5.34E-06 5.272780374 0.19889476 SLAPDRS(ph)DDEHDPLDNTSRPR ddPTM_HeLa_A486_30min_R1 7 SLAPDRSDDEHDPLDNTSRPR 21 2 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(0.998)DDEHDPLDNT(0.001)S(0.001)RPR;SLAPDRS(0.781)DDEHDPLDNT(0.165)S(0.055)RPR;S(0.011)LAPDRS(0.988)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR;SLAPDRS(1)DDEHDPLDNTSRPR ;;;;;; 212.97 1.42E-27 18401940000 3343100 3589430 3186250 923596 4082430 3161630 3594920 3683110 2977250 3186530 TRUE FALSE FALSE 3108765.954 3304990.494 4420051.331 2150178.164 3570373.562 2771580.236 2695432.993 2844546.255 3235320.427 2388602.147 1.301500109 1.383650474 1.850476161 0.90018263 1.494754397 1.160335654 1.128456238 1.190883236 1.354482759 1 21.18773514 -5.268058232 24.99563806 1.194238109 1.499053071 0.357522099 0.20530869 604.0519065 2281161.136 0.055888634 0.085112877 5.39E-06 5.268058232 0.304814962 SLAQVEEPAIENVKPPGS(ph)PVAK ddPTM_HeLa_A485_30min_R1 1 SLAQVEEPAIENVKPPGSPVAK 22 1 Q9NXL9-4;Q9NXL9 Q9NXL9-4 MCM9 DNA helicase MCM9 1 0 SLAQVEEPAIENVKPPGS(1)PVAK 131.2 8.14E-07 68038000 171680 146900 106850 219490 192300 163690 268060 265420 153430 279730 TRUE FALSE FALSE 209869.6237 164078.6771 146378.2614 231480.1829 173153.9368 172260.5553 210786.7912 200325.3288 184221.9937 209998.459 0.999386494 0.781332767 0.697044455 1.102294674 0.824548607 0.820294378 1.00375399 0.953937137 0.877254026 1 17.68001922 -7.226179139 0.364542465 0.994855959 0.849324571 0.082915769 0.114097662 3.106309004 1.205394458 0.154324437 0.147912321 5.94E-08 7.226179139 -0.145531388 SLAQVEEPAIENVKPPGS(ph)PVAK ddPTM_HeLa_A486_30min_R1 2 SLAQVEEPAIENVKPPGSPVAK 22 1 Q9NXL9-4;Q9NXL9 Q9NXL9-4 MCM9 DNA helicase MCM9 1 0 SLAQVEEPAIENVKPPGS(1)PVAK;SLAQVEEPAIENVKPPGS(1)PVAK ; 142.45 1.10E-09 177672000 232863 198026 99780 94722 195294 239723 302510 276220 174329 311260 TRUE FALSE FALSE 216540.5062 182333.6986 138417.4882 220517.603 170798.4055 210148.4136 226818.7984 213330.7358 189439.9781 233318.47 0.92808986 0.781479917 0.593255597 0.945135646 0.732039797 0.900693432 0.97214249 0.914332825 0.811937341 1 17.83194099 -6.38244193 6.184303506 0.919809588 0.792564752 0.266560507 0.102992585 0.341790107 15.95852853 0.036503228 0.032056095 4.15E-07 6.38244193 -0.127244836 SLAS(ph)IEAK ddPTM_HeLa_A485_30min_R1 6 SLASIEAK 8 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SLAS(1)IEAK;SLAS(1)IEAK;SLAS(1)IEAK;SLAS(1)IEAK;S(0.008)LAS(0.992)IEAK;SLAS(1)IEAK ;;;;; 147.74 0.00028461 1414775000 1272285 1352280 1234770 1948407 2167030 1818080 3113200 3926730 2801790 4339840 TRUE FALSE FALSE 1555300.409 1510417.383 1691562.806 2054843.541 1951272.884 1913271.858 2448039.387 2963693.311 3364083.553 3257997.757 0.477379214 0.463602954 0.519203183 0.630707476 0.598917811 0.58725389 0.751393822 0.909667081 1.032561654 1 21.63555418 -7.076993139 1.036744233 1.040172911 0.522908054 0.94668344 0.046923761 0.124309812 0.243655138 0.043834615 0.019464556 8.38E-08 7.076993139 -0.517264857 SLAS(ph)IEAK ddPTM_HeLa_A486_30min_R1 4 SLASIEAK 8 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SLAS(1)IEAK;SLAS(1)IEAK;S(0.001)LAS(0.999)IEAK;SLAS(1)IEAK ;;; 141.88 0.00040082 1942190000 1818810 2143220 861170 897490 1727340 3013310 4037000 4532960 1890200 3630780 TRUE FALSE FALSE 1691320.811 1973383.442 1194638.087 2089402.077 1510680.91 2641558.449 3026899.901 3500903.962 2054044.058 2721609.056 0.621441499 0.725079687 0.438945514 0.767708379 0.555069034 0.97058703 1.112172924 1.286336094 0.754716793 1 21.37602842 -6.363634647 4.260216342 1.059445778 0.625548762 0.645831293 0.149211697 0.139279282 4.34692172 0.05233961 0.045842433 4.33E-07 6.363634647 -0.433897016 SLASEAPSQPSLNGGS(ph)PEGVESQDGVDHFR ddPTM_HeLa_A485_30min_R1 1 SLASEAPSQPSLNGGSPEGVESQDGVDHFR 30 0 P38935 P38935 IGHMBP2 DNA-binding protein SMUBP-2 1 0 SLASEAPSQPSLNGGS(1)PEGVESQDGVDHFR 120.31 2.24E-05 249110000 67050 97430 96833 73525 123430 94261 104680 133360 86528 108350 TRUE FALSE FALSE 81965.04118 108823.591 132655.5563 77541.48457 111140.8758 99196.3602 82314.26284 100653.2509 103893.3759 81340.33903 1.007680103 1.337879732 1.630870461 0.953296796 1.366368485 1.219522335 1.011973442 1.237433383 1.277267554 1 16.31168338 -6.529492493 24.6152148 1.146353731 1.269811238 0.084697603 0.194454601 394.4734517 1468139.511 0.073924462 0.057415074 2.95E-07 6.529492493 0.123457508 SLASEAPSQPSLNGGS(ph)PEGVESQDGVDHFR ddPTM_HeLa_A486_30min_R1 1 SLASEAPSQPSLNGGSPEGVESQDGVDHFR 30 0 P38935 P38935 IGHMBP2 DNA-binding protein SMUBP-2 1 0 S(0.001)LAS(0.001)EAPS(0.006)QPS(0.006)LNGGS(0.957)PEGVES(0.028)QDGVDHFR 44.988 0.037646 206580000 50276 54469 44273 23517 58669 66196 76659 78073 59601 79866 TRUE FALSE FALSE 46751.91203 50152.67807 61416.69127 54748.76448 51310.18695 58029.41055 57478.10738 60297.48222 64767.26267 59867.03376 0.780929154 0.837734475 1.025884989 0.914506049 0.857069137 0.969304923 0.960096129 1.007190075 1.081851874 1 15.86947417 -1.832160148 0.264264236 1.027746865 1.93E-12 0.567434625 0.058842782 27.35923384 0.5605977 0.077287553 11.6615724 0.014717697 1.832160148 -1.027746865 SLATMDS(ph)PPHQK ddPTM_HeLa_A485_30min_R1 2 SLATMDSPPHQK 12 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SLATMDS(0.999)PPHQK;S(0.025)LAT(0.007)MDS(0.968)PPHQK ; 111.12 0.000351 0 318490 356730 348360 403750 464790 307210 444160 424680 380090 530600 TRUE FALSE FALSE 389337.0017 398446.4704 477232.8605 425805.8402 418513.8756 323295.0406 349261.5875 320526.5641 456370.5766 398331.185 0.977420339 1.000289421 1.198080588 1.068974402 1.050668116 0.811623726 0.876812062 0.804673539 1.145706372 1 18.60360891 -6.135474557 7.471039581 0.912655797 1.065657814 0.267680807 0.107117304 0.331164522 18.67565554 0.035490251 0.035535587 7.32E-07 6.135474557 0.153002018 SLATMDS(ph)PPHQK ddPTM_HeLa_A486_30min_R1 1 SLATMDSPPHQK 12 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SLATMDS(1)PPHQK 121.18 7.30E-05 430840000 81078 61860 38319 31263 66296 82680 82600 83672 73384 104080 TRUE FALSE FALSE 75394.85089 56957.98831 53157.14302 72781.84394 57980.53749 72479.78223 61932.60635 64621.71215 79744.98421 78017.69055 0.966381475 0.730065039 0.681347303 0.932888982 0.743171671 0.929017274 0.793827732 0.82829563 1.022139769 1 16.25151367 -7.756617226 17.56936695 1.0110723 0.820842357 0.406105416 0.089554703 2.582198169 9429.57638 0.064292252 0.022061636 1.75E-08 7.756617226 -0.190229944 SLCLS(ph)PSEASQMK ddPTM_HeLa_A485_30min_R1 1 SLCLSPSEASQMK 13 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 SLCLS(0.867)PS(0.129)EAS(0.003)QMK 94.728 0.0012388 180650000 56653 71755 52711 65880 81266 70872 91761 96108 60181 103770 TRUE FALSE FALSE 69255.2644 80146.12306 72210.99239 69478.85758 73174.8717 74582.74833 72155.51273 72537.36231 72258.77469 77902.04875 0.889004404 1.028806358 0.926945999 0.891874587 0.939318964 0.957391359 0.926233827 0.93113549 0.927559363 1 16.24937365 -10.3980731 6.313128523 1.000009991 0.936956401 0.216452484 0.036781404 5.09E-06 4.85E-07 0.035035902 0.008496108 4.00E-11 10.3980731 -0.06305359 SLDFLIELLHK ddPTM_HeLa_A486_30min_R1 1 SLDFLIELLHK 11 0 Q6AWB1;E7EX90;Q14203-5;Q14203-2;Q14203-3;Q14203-4;Q14203-6;Q14203 Q6AWB1 DKFZp686E0752;DCTN1 Dynactin subunit 1 0 0 67.726 0.033392 2291400 1958 2427.9 1088.9 1011.7 2760.9 2462.9 1967.8 2407 2309.1 3641.9 FALSE FALSE TRUE 1820.754311 2235.504362 1510.551242 2355.288728 2414.602178 2159.052439 1475.435627 1858.978644 2509.254647 2729.944535 0.666956522 0.818882704 0.553326715 0.862760653 0.884487632 0.790877767 0.540463591 0.680958393 0.919159571 1 11.41465592 -7.896811311 4.446374198 0.996243651 0.728723549 0.416123177 0.112777919 0.204176064 6.487108772 0.113520171 0.02981603 1.27E-08 7.896811311 -0.267520102 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_HeLa_A485_30min_R1 2 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 2 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 0 S(0.002)LDGAAAVDS(0.181)ADRS(0.814)PRPT(0.002)S(0.002)APAITQGQVAEGGVLDASAK;S(0.001)LDGAAAVDS(0.053)ADRS(0.905)PRPT(0.014)S(0.014)APAIT(0.014)QGQVAEGGVLDASAK ; 107.68 1.21E-05 1437030000 103646 88464 85822 168810 117326 126937 163439 136578 92045 236205 TRUE FALSE FALSE 126701.6951 98809.09527 117571.1292 178031.6629 105644.6115 133583.225 128518.9225 103082.0314 110517.5872 177323.4405 0.714523104 0.557225232 0.663032077 1.003993958 0.595773526 0.753330889 0.724771198 0.58132208 0.623254246 1 17.43602373 -5.013891721 24.79524396 0.737290815 0.629437743 0.100783859 0.14504227 1408.053341 2513237.97 0.038404528 0.070305905 9.69E-06 5.013891721 -0.107853072 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAKK ddPTM_HeLa_A485_30min_R1 2 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKK 40 3 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 0 SLDGAAAVDSADRS(0.997)PRPT(0.001)S(0.001)APAITQGQVAEGGVLDASAKK;SLDGAAAVDS(0.061)ADRS(0.931)PRPT(0.004)S(0.004)APAITQGQVAEGGVLDASAKK ; 228.45 1.76E-40 4263900000 348280 404240 227617 370100 422800 558970 749690 918300 340260 596940 TRUE FALSE FALSE 425753.6844 451512.3516 311822.0002 390317.6259 380704.5475 588236.8049 589512.6071 693085.4852 408547.061 448133.8439 0.950059207 1.00753906 0.695823367 0.870984486 0.849533131 1.312636421 1.315483343 1.546603754 0.911663037 1 18.77357016 -6.258490373 24.94922512 1.25757793 0.872009134 0.462040543 0.18218994 205.2488146 1736452.581 0.060076959 0.057593938 5.51E-07 6.258490373 -0.385568796 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAKK ddPTM_HeLa_A486_30min_R1 1 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKK 40 3 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 0 SLDGAAAVDS(0.049)ADRS(0.908)PRPT(0.034)S(0.008)APAITQGQVAEGGVLDASAKK 242.22 3.21E-51 605230000 320980 265580 136780 129280 314420 281560 340620 363240 213710 491400 TRUE FALSE FALSE 298480.9595 244534.4736 189744.8791 300970.3734 274982.5117 246823.9899 255393.2733 280538.1815 232234.5549 368350.2415 0.810318349 0.663864024 0.515120822 0.817076628 0.746524587 0.67007962 0.693343575 0.76160716 0.630472112 1 18.49071866 -10.55602055 3.109287036 1.012463146 0.699789325 0.524038081 0.085498995 41296569.63 47067740.46 4295451.02 0.021888149 2.78E-11 10.55602055 -0.312673821 SLDGAAAVDSADRSPRPT(ph)SAPAITQGQVAEGGVLDASAK ddPTM_HeLa_A486_30min_R1 1 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 2 P11171;P11171-2;P11171-5;A0A2U3TZH6;P11171-7;A0A3B3IU06;A0A2R8Y5Z6;A0A2R8Y5G2;A0A2R8Y570;A0A2R8Y6G5;A0A2R8YFR9;A0A3B3IUD6;A0A2R8YCW8;A0A2R8YD30;A0A2R8Y7Y3;Q4VB86;A0A2R8Y7N0;A0A2R8Y420;A0A2R8Y4N6;P11171-3;P11171-4;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 0 SLDGAAAVDS(0.001)ADRS(0.278)PRPT(0.357)S(0.357)APAIT(0.006)QGQVAEGGVLDASAK 143.26 7.89E-10 303490000 46518 35748 26560 16600 41292 36280 58974 47928 34603 58965 TRUE FALSE FALSE 43257.32842 32915.19829 36844.7433 38645.63892 36112.77233 31804.14247 44218.08144 37015.84066 37602.4159 44199.7802 0.978677455 0.744691447 0.833595623 0.87434007 0.817035111 0.719554313 1.000414057 0.837466623 0.850737622 1 15.43175157 -9.574125967 0.446710468 1.036810744 0.837802717 0.22212366 0.08341268 14.11297792 2.462287354 0.857229678 0.046539422 2.67E-10 9.574125967 -0.199008027 SLDGAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_HeLa_A486_30min_R1 1 SLDGAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 38 2 A0A1B0GWG0;A0A2R8Y6D0 A0A1B0GWG0 1 0 SLDGAAVDS(0.007)ADRS(0.993)PRPTSAPAITQGQVAEGGVLDASAK 271.63 4.27E-79 362760000 77926 104060 69233 37369 101450 99800 106480 103910 111630 120710 TRUE FALSE FALSE 72463.78981 95813.90662 96041.87172 86996.92052 88725.19502 87487.69069 79837.57777 80251.96134 121306.1783 90483.43031 0.800851488 1.058911077 1.061430489 0.961467975 0.980568428 0.966891843 0.882344729 0.886924391 1.340645219 1 16.465366 -7.743720311 24.99994928 1.170322786 0.956992849 0.402355316 0.107168152 203.7890965 287529.7892 0.069996252 0.026329464 1.80E-08 7.743720311 -0.213329937 SLDGAEFSRPAS(ph)VSENHDAGPDGDKR ddPTM_HeLa_A485_30min_R1 3 SLDGAEFSRPASVSENHDAGPDGDKR 26 2 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SLDGAEFS(0.007)RPAS(0.993)VSENHDAGPDGDKR;SLDGAEFS(0.001)RPAS(0.813)VS(0.185)ENHDAGPDGDKR;SLDGAEFS(0.061)RPAS(0.907)VS(0.032)ENHDAGPDGDKR ;; 206.83 7.86E-29 4067920000 887600 933040 570730 670670 667990 813520 919260 904110 709560 1086970 TRUE FALSE FALSE 1085043.558 1042150.912 781866.7771 707307.0039 601482.5701 856114.6493 722852.5913 682375.6049 851962.1835 816008.3832 1.329696582 1.277132604 0.958160226 0.866788894 0.73710342 1.049149331 0.885839663 0.836236023 1.044060577 1 19.63822445 -4.766856136 3.738740477 0.906974571 1.320277424 0.736901357 0.091511313 0.099055208 2.963403001 0.023969744 0.063663007 1.71E-05 4.766856136 0.413302853 SLDGAEFSRPAS(ph)VSENHDAGPDGDKR ddPTM_HeLa_A486_30min_R1 3 SLDGAEFSRPASVSENHDAGPDGDKR 26 2 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SLDGAEFS(0.001)RPAS(0.804)VS(0.195)ENHDAGPDGDKR;SLDGAEFSRPAS(0.958)VS(0.042)ENHDAGPDGDKR;SLDGAEFS(0.008)RPAS(0.496)VS(0.496)ENHDAGPDGDKR ;; 221.96 1.64E-38 3838910000 1276050 1160250 593174 110316 812841 959860 1097850 957480 1015981 1163400 TRUE FALSE FALSE 1186605.485 1068307.564 822866.8586 256821.2231 710886.9023 841442.2323 823156.3181 739482.7056 1104047.051 872077.0675 1.36066585 1.225015087 0.943571261 0.294493724 0.815165229 0.964871413 0.943903181 0.847955683 1.265997114 1 19.73409611 -4.741418565 3.743500653 0.857107928 1.320041971 0.339228377 0.230290504 0.241220922 7.154015347 0.063958532 0.176681879 1.81E-05 4.741418565 0.462934043 SLDGAEFSRPAS(ph)VSENHDAGPDGDKRDEDGESGGQR ddPTM_HeLa_A486_30min_R1 1 SLDGAEFSRPASVSENHDAGPDGDKRDEDGESGGQR 36 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SLDGAEFS(0.013)RPAS(0.951)VS(0.013)ENHDAGPDGDKRDEDGES(0.024)GGQR 217.97 2.26E-39 753200000 304280 280170 196380 47731 341820 276410 374730 331860 230910 299830 TRUE FALSE FALSE 282951.5433 257968.3088 272423.5952 111120.1802 298945.7483 242309.3445 280968.5905 256302.7225 250925.4647 224750.6164 1.258957808 1.147798004 1.212115008 0.494415463 1.330122039 1.078125383 1.250134905 1.140387183 1.116461742 1 17.77796555 SLDGAEFSRPASVSENHDAGPDGDKRDEDGES(ph)GGQR ddPTM_HeLa_A485_30min_R1 1 SLDGAEFSRPASVSENHDAGPDGDKRDEDGESGGQR 36 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SLDGAEFSRPASVSENHDAGPDGDKRDEDGES(1)GGQR 183 5.69E-21 606670000 120430 133990 108310 121100 145030 153360 193050 226340 132720 242740 TRUE FALSE FALSE 147219.238 149658.9649 148378.3762 127715.3864 130590.304 161389.6925 151803.2904 170829.7601 159355.6866 182229.3853 0.807878695 0.821266914 0.814239569 0.70084957 0.716625937 0.885640327 0.833034091 0.93744354 0.874478539 1 17.47539609 -7.239404524 0.862334324 0.970307408 0.777724959 0.628331578 0.052810485 0.421661575 0.571852573 0.050685261 0.022055051 5.76E-08 7.239404524 -0.192582449 SLDGAEFSRPASVSENHDAGPDGDKRDEDGES(ph)GGQR ddPTM_HeLa_A486_30min_R1 1 SLDGAEFSRPASVSENHDAGPDGDKRDEDGESGGQR 36 3 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SLDGAEFSRPASVSENHDAGPDGDKRDEDGES(0.999)GGQR 103.99 8.99E-05 1608100000 71926 57920 38896 7580.4 86135 60827 75849 65626 63877 69652 TRUE FALSE FALSE 66884.35883 53330.20826 53957.57287 17647.55429 75331.14512 53322.78318 56870.77795 50684.39241 69413.90979 52210.68584 1.281047313 1.0214424 1.03345842 0.33800656 1.442830024 1.021300186 1.089255524 0.970766646 1.329496226 1 15.67205749 SLDLLAALPT(ph)PPHNQTEDVR ddPTM_HeLa_A485_30min_R1 2 SLDLLAALPTPPHNQTEDVR 20 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 SLDLLAALPT(1)PPHNQTEDVR;SLDLLAALPT(1)PPHNQTEDVR ; 124 9.22E-07 138082000 128330 209143 197045 130557 197619 150276 174238 219830 144027 161221 TRUE FALSE FALSE 156876.5658 233600.4545 269940.1452 137688.9983 177943.3585 158144.219 137010.6279 165916.3478 172931.8978 121031.5718 1.296162344 1.930078666 2.230328346 1.137628772 1.470222653 1.306636084 1.132023867 1.370851799 1.428816426 1 16.88502391 -5.278945342 24.99596683 1.284094702 1.829978709 0.499876626 0.253805127 652.5147182 931694.5778 0.07129331 0.106016159 5.26E-06 5.278945342 0.545884007 SLDLLAALPT(ph)PPHNQTEDVR ddPTM_HeLa_A486_30min_R1 2 SLDLLAALPTPPHNQTEDVR 20 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 SLDLLAALPT(0.999)PPHNQT(0.001)EDVR;SLDLLAALPT(0.999)PPHNQT(0.001)EDVR ; 99.135 0.00031681 131664000 324974 370699 324124 107893 401491 319429 359884 344614 330215 380155 TRUE FALSE FALSE 302195.0008 341323.4612 449633.4931 251180.3566 351132.255 280021.0977 269837.2167 266152.9151 358838.3021 284961.7136 1.060475798 1.197787088 1.577873348 0.881452997 1.232208533 0.982662176 0.94692446 0.933995349 1.259250927 1 18.12040857 -5.288657116 24.98952894 1.033553088 1.270619762 0.311091382 0.166895133 878.516917 806594.439 0.046683372 0.069263962 5.14E-06 5.288657116 0.237066674 SLDNNYST(ph)PNER ddPTM_HeLa_A485_30min_R1 1 SLDNNYSTPNER 12 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-17;O60716-18;O60716-10;O60716-9;O60716-27;O60716-29;O60716-26;O60716-25;H0YC95 O60716-5 CTNND1 Catenin delta-1 1 0 SLDNNYS(0.033)T(0.967)PNER 87.719 0.01177 390820000 365250 403350 402610 363840 537600 421510 428570 428790 393750 543090 TRUE FALSE FALSE 446498.6024 450518.2738 551552.193 383715.6579 484074.6564 443579.6118 337002.5184 323628.5802 472772.0133 407707.6578 1.095144018 1.105003218 1.352812934 0.941153914 1.187308227 1.087984499 0.826578829 0.793776065 1.159585807 1 18.63717553 -6.609254894 6.362006862 0.928903542 1.135913588 0.314431198 0.13318461 0.240808487 14.42781254 0.050450207 0.03888353 2.46E-07 6.609254894 0.207010046 SLDQEIAR ddPTM_HeLa_A485_30min_R1 4 SLDQEIAR 8 0 P48681 P48681 NES Nestin 0 0 ;;; ;;; 125.25 0.026882 3707970000 2113100 3017330 3068970 2285500 3346490 2976800 3354730 3741520 2595810 3298130 FALSE FALSE TRUE 2583151.805 3370180.496 4204309.713 2410351.078 3013301.705 3132660.645 2637964.53 2823906.354 3116765.257 2475966.889 1.043290125 1.361157337 1.698047633 0.973498914 1.217020195 1.265227196 1.065428032 1.140526704 1.258807325 1 21.23956059 -5.29306872 24.99891332 1.143738657 1.366864622 0.276316155 0.174232904 894.6436395 707098.6333 0.049295811 0.073124953 5.09E-06 5.29306872 0.223125965 SLDQEIAR ddPTM_HeLa_A486_30min_R1 2 SLDQEIAR 8 0 P48681 P48681 NES Nestin 0 0 ; ; 139.28 0.01914 1571430000 1366870 1604340 1368190 478400 1869390 1386930 1555860 1678610 1308020 1525810 FALSE FALSE TRUE 1271059.472 1477206.255 1897989.809 1113739.377 1634913.675 1215824.678 1166567.372 1296427.147 1421400.227 1143737.245 1.111321221 1.291560857 1.659463149 0.973772064 1.429448663 1.063027967 1.01996099 1.133500857 1.242768156 1 20.12532422 -6.281438158 24.1958775 1.095702213 1.29563856 0.236331413 0.180798627 844.7213776 1021997.386 0.062974929 0.055621512 5.23E-07 6.281438158 0.199936346 SLDQTS(ph)PCPLVLVR ddPTM_HeLa_A486_30min_R1 1 SLDQTSPCPLVLVR 14 0 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein 1 0 SLDQT(0.093)S(0.907)PCPLVLVR 71.545 0.0049036 0 55558 63966 59525 24730 85118 58925 64961 61237 47726 60085 TRUE FALSE FALSE 51663.6711 58897.1012 82574.67413 57572.68979 74441.70675 51655.43261 48707.07071 47294.67189 51862.92811 45039.32491 1.147079163 1.307681705 1.833390582 1.278276038 1.652815776 1.146896245 1.081434298 1.050075062 1.15150323 1 15.45889758 -6.415152225 6.140871895 1.08013852 1.447790687 0.486187033 0.185030252 0.213178922 10.41793128 0.066267032 0.058079065 3.84E-07 6.415152225 0.367652167 SLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_HeLa_A485_30min_R1 8 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;S(0.001)LDS(0.999)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR ;;;;;;; 236.96 1.45E-45 42943200000 13281770 11840000 9121680 18503210 17742570 14421210 23386320 23532550 11723890 24161310 TRUE FALSE FALSE 16236253.91 13224585.01 12496169.02 19513993.51 15976057.43 15176282.26 18389641.68 17761155.21 14076767.19 18138340.07 0.895134497 0.729095659 0.688936748 1.0758423 0.880789387 0.836696313 1.013854719 0.979205106 0.776078027 1 24.1125391 -5.247183773 24.99582842 0.933247634 0.766859639 0.381239773 0.097019368 851.3488918 1492755.684 0.0261297 0.044979315 5.66E-06 5.247183773 -0.166387994 SLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_HeLa_A486_30min_R1 7 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 S(0.001)LDS(0.999)DES(1)EDEEDDYQQKR;S(0.001)LDS(0.999)DES(1)EDEEDDYQQKR;S(0.017)LDS(0.983)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;SLDS(1)DES(1)EDEEDDYQQKR;S(0.001)LDS(0.999)DES(1)EDEEDDYQQKR ;;;;;; 258.83 3.86E-58 36434820000 9371260 9623130 4962300 4831250 9632890 10729750 14475740 13453990 7609100 14002650 TRUE FALSE FALSE 8714383.067 8860558.132 6883835.455 11247394.16 8424643.113 9406022.537 10853756.74 10390810.18 8268662.915 10496295.3 0.830234175 0.844160523 0.655834774 1.071558473 0.802630154 0.89612785 1.034055963 0.989950252 0.787769654 1 23.32337688 -5.259686604 24.99996405 0.93621005 0.783484902 0.362148204 0.099245409 185.0537517 2639412.095 0.027117134 0.044034074 5.50E-06 5.259686604 -0.152725148 SLDS(ph)DES(ph)EDEEDDYQQKRK ddPTM_HeLa_A485_30min_R1 2 SLDSDESEDEEDDYQQKRK 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 S(0.186)LDS(0.814)DES(1)EDEEDDYQQKRK;SLDS(1)DES(1)EDEEDDYQQKRK ; 130.49 1.39E-05 8741700000 545300 429790 245740 826910 584580 614690 1183810 1583600 414790 1155710 TRUE FALSE FALSE 666600.1037 480050.2018 336649.4521 872081.9995 526377.1626 646874.2179 930879.3227 1195219.617 498034.5483 867612.7663 0.768315232 0.553300067 0.388018094 1.005151184 0.606695963 0.745579414 1.072920269 1.377595701 0.574028608 1 19.72669176 -6.672563441 4.507035664 1.03733487 0.663563208 0.318722783 0.235249956 0.2402198 8.72862092 0.092255566 0.069421521 2.13E-07 6.672563441 -0.373771662 SLDS(ph)DES(ph)EDEEDDYQQKRK ddPTM_HeLa_A486_30min_R1 1 SLDSDESEDEEDDYQQKRK 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 S(0.094)LDS(0.906)DES(0.999)EDEEDDYQQKRK 76.733 0.013049 261470000 376160 259260 92624 210460 255300 355130 515210 498710 190230 599790 TRUE FALSE FALSE 349793.1265 238715.2934 128490.4934 489961.5161 223277.8934 311317.6713 386299.0087 385164.6198 206719.2896 449598.68 0.778011907 0.530951944 0.285789303 1.089775255 0.49661599 0.692434576 0.859208503 0.856685388 0.459786247 1 18.77827827 -14 0.120595186 2.003617863 0.525773112 0.148470679 0.225457417 290.5149189 2.264233173 71.93485206 2.127497902 1.00E-14 14 -1.477844751 SLDS(ph)ESISPGDFHR ddPTM_HeLa_A486_30min_R1 1 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 S(0.424)LDS(0.541)ES(0.035)ISPGDFHR 79.875 0.0036744 71538000 51931 58260 41844 12068 56695 48207 57363 63136 45833 52618 TRUE FALSE FALSE 48290.90507 53643.26542 58047.11742 28094.91388 49583.78444 42259.71047 43010.17068 48761.31105 49805.84134 39442.11031 1.224348918 1.36005059 1.47170415 0.712307573 1.257128081 1.071436344 1.090463221 1.236275409 1.262758026 1 15.26744912 SLDS(ph)PTSSPGAGTR ddPTM_HeLa_A485_30min_R1 1 SLDSPTSSPGAGTR 14 0 Q9P107;K7EJC2 Q9P107 GMIP GEM-interacting protein 1 0 SLDS(0.979)PT(0.015)S(0.004)S(0.001)PGAGTR 206.67 4.97E-22 249340000 158130 206870 193020 166850 238860 202200 238200 256430 190370 212310 TRUE FALSE FALSE 193305.473 231061.647 264426.1302 175964.593 215078.2597 212786.8793 187306.6241 193540.1404 228575.5128 159385.0243 1.212820802 1.449707386 1.659039997 1.104022124 1.349425774 1.335049389 1.175183333 1.214293133 1.434109094 1 17.28215656 -13.71584424 0.137335794 1.08E-16 1.448345712 0.285146058 0.153932851 166.4721305 1.517284853 46.37550783 1.030184678 1.92E-14 13.71584424 1.448345712 SLDS(ph)PTSSPGAGTR ddPTM_HeLa_A486_30min_R1 2 SLDSPTSSPGAGTR 14 0 Q9P107;K7EJC2 Q9P107 GMIP GEM-interacting protein 1 0 SLDS(0.45)PT(0.421)S(0.126)S(0.003)PGAGTR;SLDS(0.981)PT(0.014)S(0.004)S(0.001)PGAGTR ; 141.87 1.07E-07 412960000 386710 482570 440560 137426 584190 348080 429220 444990 403270 396200 TRUE FALSE FALSE 359603.626 444329.3957 611156.6306 319934.6731 510915.4428 305137.4286 321824.6162 343675.4911 438225.7683 296988.9412 1.210831705 1.496114279 2.057843057 1.077261234 1.720318073 1.027437006 1.083624915 1.157199624 1.47556258 1 18.18004969 -6.268835762 24.79235427 1.154518553 1.517684647 0.300381237 0.277408787 684.9574609 2295940.832 0.095811322 0.086164177 5.38E-07 6.268835762 0.363166095 SLDSEPSVPSAAKPPS(ph)PEK ddPTM_HeLa_A485_30min_R1 4 SLDSEPSVPSAAKPPSPEK 19 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK ;;; 223.44 4.19E-35 5079350000 1841710 1125440 658516 4115770 1572340 1451380 2851960 1886410 1122450 5368620 TRUE FALSE FALSE 2251392.036 1257050.418 902128.4715 4340604.093 1415792.309 1527372.013 2242615.448 1423764.99 1347715.419 4030321.836 0.558613462 0.311898272 0.223835343 1.076986968 0.351285174 0.378970235 0.556435823 0.353263349 0.334393995 1 21.94246362 -10.19418389 3.43680633 1.000891461 0.461462442 0.333621572 0.228683672 139723677 216030849 1379549.771 0.057114634 6.39E-11 10.19418389 -0.539429019 SLDSEPSVPSAAKPPS(ph)PEK ddPTM_HeLa_A486_30min_R1 4 SLDSEPSVPSAAKPPSPEK 19 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK ;;; 195.43 2.21E-19 6066570000 3076270 2534210 712670 2413320 1664620 3374630 5046670 3811710 1917500 7295400 TRUE FALSE FALSE 2860639.359 2333389.97 988634.91 5618330.922 1455827.838 2958302.461 3783939.788 2943866.842 2083710.444 5468584.355 0.523104184 0.426689947 0.180784431 1.027383059 0.266216582 0.540963121 0.691941377 0.538323385 0.38103288 1 22.38273598 -11.33114364 2.124501394 3.466670635 0.511812309 0.305438559 0.222302867 10341004.59 1194741.961 122544384.8 0.056022111 4.67E-12 11.33114364 -2.954858326 SLDSESIS(ph)PGDFHR ddPTM_HeLa_A485_30min_R1 2 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 SLDSESIS(1)PGDFHR;SLDSESIS(1)PGDFHR ; 156.67 1.41E-08 354620000 285240 400730 400240 234637 467620 345040 383140 412210 324270 338450 TRUE FALSE FALSE 348690.6539 447591.8876 548305.4314 247454.6252 421062.1109 363105.7609 301279.009 311114.8512 389348.0146 254080.6437 1.372362132 1.761613483 2.157997647 0.973921593 1.657198694 1.429096509 1.185761358 1.224472855 1.532379677 1 17.95492695 -5.26573286 24.99997069 1.312709237 1.76375332 0.395452554 0.269362222 384.5217839 2238986.126 0.074468172 0.114950852 5.42E-06 5.26573286 0.451044083 SLEEDLETLKS(ph)LEK ddPTM_HeLa_A485_30min_R1 1 SLEEDLETLKSLEK 14 1 P48681 P48681 NES Nestin 1 0 SLEEDLET(0.123)LKS(0.877)LEK 82.007 0.0018684 16856000 18259 14464 7657.5 32562 18529 18994 28950 25280 13746 45610 TRUE FALSE FALSE 22320.65156 16155.43898 10490.32791 34340.77961 16684.1877 19988.49647 22764.596 19080.04036 16504.69611 34240.26639 0.651883116 0.471825739 0.306374015 1.002935527 0.487268046 0.58377164 0.664848683 0.557239834 0.482025926 1 15.06340631 -10.04664579 4.293360689 1.000032671 0.579375914 0.350112831 0.172201312 227833818.4 437795835.1 108941.6597 0.042240354 8.98E-11 10.04664579 -0.420656757 SLEEDLETLKS(ph)LEK ddPTM_HeLa_A486_30min_R1 2 SLEEDLETLKSLEK 14 1 P48681 P48681 NES Nestin 1 0 SLEEDLET(0.009)LKS(0.991)LEK;SLEEDLET(0.007)LKS(0.993)LEK ; 64.52 0.0091531 48268000 79303 68776 21127 56024 44708 87651 110699 93168 48658 163778 TRUE FALSE FALSE 73744.26922 63325.93928 29307.9402 130426.7033 39100.30575 76837.51079 83000.93935 71955.68024 52875.71462 122766.9228 0.600685165 0.515822486 0.238728312 1.062392869 0.318492187 0.625881215 0.676085524 0.586116184 0.430700008 1 16.90556238 -11.11903504 2.434626048 1.849163262 0.564359723 0.276288002 0.212792128 12692473.09 3983642.316 59513061.82 0.050257499 7.60E-12 11.11903504 -1.284803539 SLEEIYLFSLPIK ddPTM_HeLa_A485_30min_R1 1 SLEEIYLFSLPIK 13 0 H0YEN5;P15880;E9PQD7;E9PPT0;E9PMM9;H3BNG3;H0YE27 H0YEN5 RPS2 40S ribosomal protein S2 0 0 116.77 0.0016298 4826600 2446.3 2213 2653.9 2577.1 2927.9 2440.1 2689.1 2066 2380.8 4753 FALSE FALSE TRUE 2990.470995 2471.791099 3635.688048 2717.880447 2636.387996 2567.859863 2114.551817 1559.310261 2858.604722 3568.164572 0.838097833 0.692734612 1.018923868 0.76170266 0.738863901 0.719658472 0.592616112 0.437006262 0.801141501 1 11.80096644 -5.910483281 1.904106102 0.667543719 0.836197484 0.091786175 0.156993228 0.589539241 4.367845827 0.055893897 0.065530372 1.23E-06 5.910483281 0.168653765 SLEEIYLFSLPIK ddPTM_HeLa_A486_30min_R1 2 SLEEIYLFSLPIK 13 0 H0YEN5;P15880;E9PQD7;E9PPT0;E9PMM9;H3BNG3;H0YE27 H0YEN5 RPS2 40S ribosomal protein S2 0 0 ; ; 140.07 0.00017736 4160900 8966.6 12606.4 11300.2 4019.55 13589.6 11996.8 12511.4 14439.2 11989.3 13224 FALSE FALSE TRUE 8338.087644 11607.42295 15675.94007 9357.715537 11885.06565 10516.75679 9380.915388 11151.70937 13028.54218 9912.624326 0.841158443 1.170973757 1.581411698 0.944019992 1.198982758 1.060945764 0.946360427 1.125000706 1.314338338 1 13.27505134 SLENETLNKEEDCHS(ph)PTSKPPKPDQPLK ddPTM_HeLa_A485_30min_R1 4 SLENETLNKEEDCHSPTSKPPKPDQPLK 28 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SLENETLNKEEDCHS(0.966)PT(0.017)S(0.017)KPPKPDQPLK;SLENETLNKEEDCHS(0.978)PT(0.019)S(0.003)KPPKPDQPLK;SLENETLNKEEDCHS(0.998)PT(0.002)SKPPKPDQPLK;SLENET(0.001)LNKEEDCHS(0.993)PT(0.005)S(0.001)KPPKPDQPLK ;;; 190.6 1.21E-20 19099470000 6162600 2722427 1510345 10271660 5787766 5347718 10484710 9458860 3905000 14174970 TRUE FALSE FALSE 7533449.109 3040791.156 2069084.466 10832774.78 5211515.695 5627716.245 8244566.056 7139059.754 4688697.681 10641410.85 0.70793706 0.285750752 0.194437044 1.017982947 0.489739168 0.528850575 0.774762498 0.670875305 0.440608651 1 23.3431861 -14 0.132367325 2.395928687 0.399791639 0.239251245 0.22853772 211.4752618 1.751648792 78.87384851 1.683179696 1.00E-14 14 -1.996137048 SLENETLNKEEDCHS(ph)PTSKPPKPDQPLK ddPTM_HeLa_A486_30min_R1 8 SLENETLNKEEDCHSPTSKPPKPDQPLK 28 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SLENETLNKEEDCHS(0.873)PT(0.102)S(0.025)KPPKPDQPLK;S(0.071)LENET(0.076)LNKEEDCHS(0.827)PT(0.013)S(0.013)KPPKPDQPLK;SLENETLNKEEDCHS(0.738)PT(0.131)S(0.131)KPPKPDQPLK;S(0.001)LENET(0.002)LNKEEDCHS(0.937)PT(0.048)S(0.012)KPPKPDQPLK;SLENETLNKEEDCHS(0.994)PT(0.003)S(0.003)KPPKPDQPLK;S(0.002)LENET(0.005)LNKEEDCHS(0.749)PT(0.122)S(0.122)KPPKPDQPLK;SLENETLNKEEDCHS(0.97)PT(0.012)S(0.017)KPPKPDQPLK;SLENETLNKEEDCHS(1)PTSKPPKPDQPLK ;;;;;;; 253.88 2.36E-63 99412100000 11161620 10204270 2795348 5278898 7891180 15612990 20190240 18232870 7905428 20799776 TRUE FALSE FALSE 10379248.08 9395646.482 3877781.608 12289541.32 6901394.622 13686818.04 15138428.4 14081643.52 8590676.864 15591376.71 0.6657044 0.602618143 0.248713227 0.788226823 0.442641773 0.877845382 0.970948793 0.903168706 0.550988987 1 23.89424499 -6.271934541 24.54456122 0.861435844 0.549070628 0.442392212 0.174582192 538.8559921 1260194.276 0.060303945 0.053769381 5.35E-07 6.271934541 -0.312365216 SLENETLNKEEDCHSPT(ph)SKPPKPDQPLK ddPTM_HeLa_A485_30min_R1 1 SLENETLNKEEDCHSPTSKPPKPDQPLK 28 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SLENETLNKEEDCHS(0.289)PT(0.422)S(0.289)KPPKPDQPLK 236.33 1.16E-49 330780000 188190 73076 45772 326960 184520 172660 372510 299670 118560 502370 TRUE FALSE FALSE 230052.2163 81621.60252 62704.96753 344820.9969 166148.5409 181700.2106 292920.1954 226175.4626 142353.9045 377138.4044 0.609994139 0.216423471 0.166265134 0.914308893 0.440550575 0.48178655 0.776691506 0.599714747 0.377457991 1 18.52473454 -14 0.119891856 2.521529082 0.280821972 0.310651777 0.219184588 193.3519957 1.500929109 72.10594838 2.174725679 1.00E-14 14 -2.24070711 SLEQYDQVLDGAHGAS(ph)LTDLANLSEGVSLAER ddPTM_HeLa_A485_30min_R1 3 SLEQYDQVLDGAHGASLTDLANLSEGVSLAER 32 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2;M0R3I1 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 SLEQYDQVLDGAHGAS(0.993)LT(0.007)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.998)LT(0.002)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.991)LT(0.009)DLANLSEGVSLAER ;; 227.5 2.22E-39 290206000 100928 142945 137834 110182 172817 140503 163043 176086 126586 157704 TRUE FALSE FALSE 123379.0854 159661.1743 188824.5324 116200.9637 155610.7327 147859.5198 128207.5311 132900.6324 151990.6491 118391.2951 1.042129704 1.348588797 1.594919053 0.981499219 1.314376471 1.248905333 1.082913494 1.122554089 1.283799193 1 16.85320348 -8.550757023 0.244742435 0.935566302 1.30701847 0.140736076 0.169122121 9.16662455 1.238901425 1.035526881 0.384687198 2.81E-09 8.550757023 0.371452168 SLEQYDQVLDGAHGAS(ph)LTDLANLSEGVSLAER ddPTM_HeLa_A486_30min_R1 3 SLEQYDQVLDGAHGASLTDLANLSEGVSLAER 32 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2;M0R3I1 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 SLEQYDQVLDGAHGAS(0.99)LT(0.01)DLANLSEGVSLAER;SLEQYDQVLDGAHGAS(1)LTDLANLSEGVSLAER;SLEQYDQVLDGAHGAS(0.984)LT(0.016)DLANLSEGVSLAER ;; 265.7 4.04E-64 391275000 162485 173458 173170 60516 224044 171481 183488 182079 155607 178039 TRUE FALSE FALSE 151095.6406 159712.5564 240226.0617 140884.3063 195942.3124 150325.4177 137577.3617 140623.5865 169095.14 133456.8756 1.132168275 1.196735318 1.800027617 1.055654163 1.468206951 1.126396951 1.030875038 1.053700575 1.267039554 1 17.02601411 -6.39575488 6.498038156 1.090720773 1.333302703 0.25004508 0.204130425 0.359051978 17.46523601 0.071659061 0.062937464 4.02E-07 6.39575488 0.24258193 SLESLADGGS(ph)ASPIKDQPVMAVK ddPTM_HeLa_A486_30min_R1 1 SLESLADGGSASPIKDQPVMAVK 23 1 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 SLESLADGGS(0.5)AS(0.5)PIKDQPVMAVK 135.8 6.31E-07 110270000 162580 134390 64163 82437 128720 184790 244180 230110 133840 272380 TRUE FALSE FALSE 151183.9816 123740.447 89008.63194 191917.5021 112574.7373 161992.4886 183083.5813 177718.9763 145441.359 204174.2751 0.740465377 0.606053074 0.4359444 0.939969063 0.551365921 0.79340303 0.896702492 0.870427855 0.712339294 1 17.63944158 -6.794294929 0.297793462 0.994708772 0.56149504 0.344059981 0.139480682 2.119468103 0.528094473 0.221888145 0.332914393 1.61E-07 6.794294929 -0.433213732 SLESLADGGSAS(ph)PIKDQPVMAVK ddPTM_HeLa_A485_30min_R1 3 SLESLADGGSASPIKDQPVMAVK 23 1 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 SLESLADGGS(0.004)AS(0.996)PIKDQPVMAVK;SLESLADGGS(0.028)AS(0.972)PIKDQPVMAVK;SLESLADGGS(0.16)AS(0.84)PIKDQPVMAVK ;; 243.97 3.36E-49 628980000 502890 383160 286680 733520 608439 526500 838090 873570 403440 1027143 TRUE FALSE FALSE 614756.1456 427967.229 392734.8618 773590.3402 547860.6768 554066.7259 659025.2249 659325.5878 484406.7074 771095.1533 0.797250693 0.555012215 0.50932088 1.0032359 0.710496849 0.718545206 0.85466135 0.855050878 0.628206137 1 19.55654937 -14 0.07136869 1.832474229 0.442746328 0.237834311 0.141430605 440.2151694 2.252496381 60.88076802 7.275045078 1.00E-14 14 -1.389727901 SLESLADGGSAS(ph)PIKDQPVMAVK ddPTM_HeLa_A486_30min_R1 2 SLESLADGGSASPIKDQPVMAVK 23 1 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 SLESLADGGS(0.216)AS(0.784)PIKDQPVMAVK;SLESLADGGS(0.145)AS(0.855)PIKDQPVMAVK ; 162.47 1.50E-14 695080000 549560 487580 263619 260214 517980 632470 794100 745520 461730 927290 TRUE FALSE FALSE 511038.6819 448942.3851 365699.3368 605791.3425 453010.1184 554442.2819 595407.7809 575781.3706 501753.1282 695090.5484 0.735211669 0.645876118 0.526117551 0.871528672 0.651728209 0.797654756 0.856590242 0.828354481 0.7218529 1 19.4068414 -13.99999999 0.053087613 2.090466654 0.226563649 0.481715242 0.09299358 416.7536943 1.626735206 61.83592568 12.60031323 1.00E-14 13.99999999 -1.863903005 SLETENAGLR ddPTM_HeLa_A485_30min_R1 2 SLETENAGLR 10 0 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 197.66 7.15E-14 68832000 39707 49740 51806 39685 62734 50914 59373 63854 49880 57055 FALSE FALSE TRUE 48539.68516 55556.66032 70971.19523 41852.89106 56487.98269 53579.77831 46687.47352 48193.70638 59890.45847 42832.23852 1.133251187 1.297075806 1.656957415 0.977135273 1.318819297 1.250921739 1.090007787 1.125173655 1.39825656 1 15.38640946 -5.28362448 24.99815458 1.177744417 1.355893032 0.21079962 0.173161733 1320.792882 1488265.223 0.048252126 0.071633347 5.20E-06 5.28362448 0.178148615 SLETENR ddPTM_HeLa_A485_30min_R1 2 SLETENR 7 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 167.82 0.0010213 86860000 103835 141468 137409 112192 163492 130241 157419 177319 138718 156328 FALSE FALSE TRUE 126932.7375 158011.452 188242.3072 118320.7649 147214.1624 137060.2174 123785.1447 133831.2372 166557.4302 117358.3066 1.081582899 1.346401943 1.60399645 1.008201024 1.25439917 1.167878281 1.054762532 1.14036442 1.419221485 1 16.84056043 -5.285219745 24.98177151 1.156328562 1.344234698 0.225516626 0.165009615 1162.933743 1221683.425 0.046337024 0.068767632 5.19E-06 5.285219745 0.187906136 SLETENRR ddPTM_HeLa_A485_30min_R1 2 SLETENRR 8 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 99.442 0.0056663 258460000 192251 324680 325920 199595 321980 282470 317040 364680 258200 255090 FALSE FALSE TRUE 235016.5717 362648.5017 446491.3707 210498.3694 289922.5407 297259.6924 249301.814 275241.6582 310018.3716 191500.7576 1.227235728 1.893718366 2.331538404 1.099203847 1.513949837 1.552263793 1.301831999 1.437287568 1.618888487 1 17.54699057 -5.280296512 24.98286063 1.390650425 1.825119695 0.310448903 0.309783477 991.9420897 1314171.606 0.086764444 0.12892612 5.24E-06 5.280296512 0.43446927 SLETENRR ddPTM_HeLa_A486_30min_R1 4 SLETENRR 8 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ;;; ;;; 102.95 0.0014201 315511000 290423 330368 457154 92257 448708 270082 303295 284116 304355 287610 FALSE FALSE TRUE 270065.8474 304188.4365 634176.2718 214778.9584 392426.8586 236762.0288 227407.3831 219428.989 330736.7365 215590.584 1.252679233 1.410954184 2.941576854 0.996235339 1.820241178 1.098202085 1.054811295 1.01780414 1.534096389 1 17.71793464 -6.122051151 1.705899782 1.131511045 1.745584305 0.204010228 0.510231814 0.588462998 3.415226727 0.206167909 0.20814602 7.55E-07 6.122051151 0.61407326 SLEVILR ddPTM_HeLa_A486_30min_R1 1 SLEVILR 7 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 117.93 0.012214 16790000 18312 18220 15659 35463 21027 19632 27551 29620 16345 58659 FALSE FALSE TRUE 17028.42336 16776.18084 21722.58416 82559.6562 18389.59759 17210.00344 20657.4484 22876.1726 17761.79776 43970.40459 0.387270109 0.381533465 0.494027389 1.877618752 0.418226709 0.391399706 0.469803464 0.520262954 0.403948927 1 15.42424519 SLFFGSILAPVRS(ph)PQGPSPVLAEDS(ph)EGEG ddPTM_HeLa_A485_30min_R1 1 SLFFGSILAPVRSPQGPSPVLAEDSEGEG 29 1 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 2 0 SLFFGSILAPVRS(1)PQGPSPVLAEDS(1)EGEG 122.89 7.53E-06 84423000 23804 41423 40346 23505 50011 43693 56024 81915 32530 42293 TRUE FALSE FALSE 29099.11768 46267.05952 55271.66434 24789.01863 45031.72924 45980.69792 44054.01473 61825.21781 39058.47262 31750.13344 0.916503791 1.457224096 1.740832505 0.780753211 1.41831622 1.448204871 1.387522191 1.94724277 1.230182943 1 14.95447504 -5.975366706 24.99969763 1.457819458 1.255191761 0.050766051 0.335030124 650.9897932 660669.5293 0.10285242 0.116619148 1.06E-06 5.975366706 -0.202627696 SLFFSS(ph)K ddPTM_HeLa_A485_30min_R1 1 SLFFSSK 7 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 SLFFS(0.033)S(0.967)K 78.149 0.014283 35475000 153650 150310 86663 150580 136040 120310 164330 172250 102660 187890 TRUE FALSE FALSE 187828.9124 167887.447 118723.25 158805.8041 122495.3799 126609.2456 129219.553 130005.4174 123262.9203 141052.4809 1.331624309 1.190248097 0.841695583 1.125863247 0.868438323 0.897603819 0.916109751 0.921681183 0.873879847 1 17.10587251 -4.605644433 4.25496145 0.931451998 1.304318441 0.747655316 0.078441208 0.091075541 3.002227429 0.019791476 0.059917578 2.48E-05 4.605644433 0.372866443 SLFFSS(ph)K ddPTM_HeLa_A486_30min_R1 1 SLFFSSK 7 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 SLFFS(0.107)S(0.893)K 91.867 0.0063977 54466000 94705 97355 74680 42353 80418 79540 85720 85789 69631 130690 TRUE FALSE FALSE 88066.66856 89640.23524 103598.096 98599.9244 70331.22457 69727.1635 64271.94935 66256.71746 75666.67114 97964.37335 0.898966283 0.915028925 1.057507872 1.006487573 0.71792655 0.71176042 0.656074725 0.676334827 0.772389682 1 16.57996956 -5.764368014 24.99712354 0.732381401 0.971893502 0.515655127 0.0999485 54.23133467 462887.4794 0.02971587 0.035182262 1.72E-06 5.764368014 0.239512101 SLFS(ph)PQNTLAAPTGHPPTSGVEK ddPTM_HeLa_A485_30min_R1 1 SLFSPQNTLAAPTGHPPTSGVEK 23 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.006)LFS(0.993)PQNT(0.001)LAAPTGHPPTSGVEK 130.46 1.85E-06 185380000 81392 91870 99431 94789 153820 121660 149420 156690 107240 145850 TRUE FALSE FALSE 99497.3696 102613.3973 136214.6646 99967.08305 138505.1407 128029.9295 117495.1964 118261.5318 128762.0843 109492.2792 0.908715851 0.937174732 1.244057258 0.913005774 1.264976323 1.169305548 1.073091155 1.080090146 1.175992365 1 16.74046962 -4.647233424 7.991460127 1.116274888 0.916614626 0.365445525 0.101476949 0.224143288 14.58356095 0.024493275 0.065288085 2.25E-05 4.647233424 -0.199660262 SLFSPQNT(ph)LAAPTGHPPTSGVEK ddPTM_HeLa_A486_30min_R1 1 SLFSPQNTLAAPTGHPPTSGVEK 23 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 SLFS(0.181)PQNT(0.819)LAAPTGHPPTSGVEK 193.75 2.57E-21 249300000 190820 181710 111920 42586 185970 177030 199060 197700 148270 183840 TRUE FALSE FALSE 177444.5034 167310.6378 155258.4213 99142.36018 162643.9085 155189.8385 149253.0826 152688.0258 161122.163 137805.2674 1.287646741 1.214109163 1.126650848 0.719438103 1.180244497 1.126153168 1.083072406 1.107998472 1.169201773 1 17.07227151 -4.773765861 3.614353523 1.060290162 1.261738492 0.276054519 0.125052159 0.296793058 8.160705137 0.034215188 0.091034318 1.68E-05 4.773765861 0.20144833 SLGAWNLENLRS(ph)PEEVDKESQR ddPTM_HeLa_A486_30min_R1 2 SLGAWNLENLRSPEEVDKESQR 22 2 P48681 P48681 NES Nestin 1 0 SLGAWNLENLRS(1)PEEVDKESQR;SLGAWNLENLRS(1)PEEVDKESQR ; 245.07 2.85E-47 1383390000 1043010 1059860 696110 513040 1162470 1246590 1563960 1493940 910050 1585200 TRUE FALSE FALSE 969900.3851 975872.8337 965662.4345 1194383.048 1016662.173 1092798.4 1172640.666 1153802.474 988933.8667 1188255.602 0.816238849 0.821265081 0.812672318 1.005156673 0.855592156 0.919666104 0.986858942 0.971005289 0.832256852 1 20.18041377 -5.239357258 24.58375297 0.935197105 0.817179354 0.507127217 0.055006979 546.6655553 608594.7295 0.014625589 0.025304546 5.76E-06 5.239357258 -0.118017751 SLGEQDQMT(ph)LRPPEKVDLEPLK ddPTM_HeLa_A486_30min_R1 1 SLGEQDQMTLRPPEKVDLEPLK 22 2 P48681 P48681 NES Nestin 1 0 S(0.135)LGEQDQMT(0.865)LRPPEKVDLEPLK 79.558 0.0093916 195690000 217600 194580 72523 99552 173700 236570 285010 277680 152320 312020 TRUE FALSE FALSE 202347.3637 179160.7722 100605.8478 231762.0871 151912.9263 207384.3987 213697.4835 214458.3257 165523.2202 233888.1611 0.865145815 0.766010436 0.430145106 0.990909869 0.64951097 0.886681898 0.913673794 0.916926811 0.707702431 1 17.83545931 -6.286171092 23.57784747 0.881597256 0.738457335 0.185030649 0.151680874 686.3205288 654296.6979 0.052422352 0.046258895 5.17E-07 6.286171092 -0.143139921 SLGGES(ph)SGGTTPVGSFHTEAAR ddPTM_HeLa_A485_30min_R1 1 SLGGESSGGTTPVGSFHTEAAR 22 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 SLGGES(0.569)S(0.431)GGTTPVGSFHTEAAR 168.06 4.59E-14 261080000 112160 169760 174620 83503 209040 113370 195420 166480 133410 161730 TRUE FALSE FALSE 137109.6051 189611.9553 239219.2045 88064.55745 188227.2436 119305.8779 153666.9206 125650.519 160184.1633 121413.6874 1.129276344 1.561701644 1.970282014 0.725326438 1.550296738 0.982639441 1.265647423 1.034895831 1.319325413 1 16.88957155 -5.261148372 24.99999963 1.14449473 1.554548139 0.324003111 0.282568748 31.45996895 2702560.468 0.075014161 0.120324773 5.48E-06 5.261148372 0.410053409 SLGGES(ph)SGGTTPVGSFHTEAAR ddPTM_HeLa_A486_30min_R1 1 SLGGESSGGTTPVGSFHTEAAR 22 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 S(0.002)LGGES(0.499)S(0.499)GGTTPVGSFHTEAAR 124.1 2.08E-06 164410000 109490 128950 113990 18995 134900 106040 143620 136760 94418 100930 TRUE FALSE FALSE 101815.3164 118731.5324 158129.9808 44221.31995 117979.5841 92957.86294 107684.7569 105622.7334 102602.2283 75656.47106 1.345758201 1.569350655 2.090105163 0.584501489 1.559411673 1.22868357 1.423338353 1.396083269 1.356159319 1 16.20717586 -12.8885678 0.077899886 1.02E-10 1.805639831 0.112675702 0.348685216 492.8019929 3.390634646 97.70773598 14.33128317 1.29E-13 12.8885678 1.805639831 SLGGESS(ph)GGTTPVGSFHTEAAR ddPTM_HeLa_A485_30min_R1 1 SLGGESSGGTTPVGSFHTEAAR 22 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 S(0.037)LGGES(0.437)S(0.469)GGT(0.055)T(0.002)PVGSFHTEAAR 129.57 1.42E-06 280360000 80839 135660 119920 57026 162010 98664 124380 135030 103880 117940 TRUE FALSE FALSE 98821.35666 151524.2569 164283.3983 60141.18598 145879.7155 103829.8945 97805.19691 101913.6808 124727.7632 88539.72852 1.11612446 1.711370245 1.855476643 0.679256499 1.647618735 1.172692713 1.104647581 1.151050297 1.408720867 1 16.43403733 -5.237326357 24.99825321 1.190331964 1.576028372 0.270098121 0.295185695 1062.767173 1101781.943 0.077334234 0.133860303 5.79E-06 5.237326357 0.385696407 SLGGQQGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SLGGQQGSPK 10 0 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y695;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SLGGQQGS(1)PK;SLGGQQGS(1)PK ; 98.942 0.0018664 552270000 731770 841990 556240 1265720 1072780 843850 1288550 1351780 670870 1650430 TRUE FALSE FALSE 894549.7119 940453.4062 762016.3231 1334863.079 965970.2564 888032.6812 1013240.766 1020253.835 805507.4554 1239008.175 0.721988547 0.759037289 0.615021223 1.077364222 0.779631867 0.71672867 0.817783762 0.82344399 0.650122793 1 20.24075428 -11.447877 2.304004287 3.383379939 0.77859936 0.24256517 0.119786248 5900145.945 684992.4846 73630811.49 0.029512347 3.57E-12 11.447877 -2.604780579 SLGGQQGS(ph)PK ddPTM_HeLa_A486_30min_R1 3 SLGGQQGSPK 10 0 A0A0C4DGT3;A0A3B3IU98;A0A2R8Y695;A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90-2;Q6DN90;Q6DN90-3 A0A0C4DGT3;A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SLGGQQGS(1)PK;SLGGQQGS(1)PK;SLGGQQGS(1)PK ;; 113.07 0.00060205 631700000 1264810 1226700 660340 835970 1157870 1354010 1958690 1674480 1077210 2250720 TRUE FALSE FALSE 1176153.35 1129491.824 916041.3325 1946180.408 1012639.148 1186966.013 1468605.045 1293237.458 1170583.43 1687125.062 0.697134656 0.669477237 0.542959946 1.153548395 0.600215817 0.703543584 0.870477879 0.76653325 0.693833229 1 20.68613549 -14 0.190097423 2.051186156 0.702743394 0.185775449 0.160435264 244.895782 2.395154435 98.01962041 0.436327551 1.00E-14 14 -1.348442761 SLGLALTHSFGPSLADTDLS(ph)PMDGISTCGPK ddPTM_HeLa_A486_30min_R1 1 SLGLALTHSFGPSLADTDLSPMDGISTCGPK 31 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.002)LGLALT(0.008)HS(0.006)FGPS(0.014)LADT(0.116)DLS(0.853)PMDGISTCGPK 62.332 0.00066108 0 12778 20725 20577 3590.1 25176 15235 18667 20854 15937 13334 TRUE FALSE FALSE 11882.32819 19082.67552 28544.96547 8357.934234 22018.19132 13355.4606 13996.31916 16105.99944 17318.43199 9995.07961 1.188817763 1.909206956 2.855901762 0.836204869 2.202903046 1.336203524 1.400320929 1.611392812 1.732695753 1 13.28700234 -6.010600952 1.18522407 1.463175351 1.857350144 0.077516961 0.549690201 1.320244355 3.893607364 0.24950165 0.283713806 9.76E-07 6.010600952 0.394174794 SLGLSLS(ph)GGDQEDAGR ddPTM_HeLa_A485_30min_R1 4 SLGLSLSGGDQEDAGR 16 0 H0YE82;H7C1L7;H0YEB7;C9JEV6;H7C3G9;Q9UJ70;Q9UJ70-2 H0YE82 NAGK N-acetyl-D-glucosamine kinase 1 0 SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR;SLGLS(0.001)LS(0.999)GGDQEDAGR ;;; 279.65 1.17E-58 730210000 529780 707380 717500 551590 872460 726550 846180 917710 651840 784660 TRUE FALSE FALSE 647627.7333 790101.9376 982933.1077 581721.965 785594.819 764591.0345 665386.7303 692640.1836 782658.309 589058.7026 1.099428173 1.341295756 1.668650515 0.987544981 1.333644364 1.297987843 1.129576267 1.175842375 1.328659275 1 19.16805189 -13.99999951 0.154219727 0.020231316 1.344249674 0.166061854 0.175956384 236.9602218 2.138464067 70.77697662 0.829441568 1.00E-14 13.99999951 1.324018358 SLGLSLS(ph)GGDQEDAGR ddPTM_HeLa_A486_30min_R1 4 SLGLSLSGGDQEDAGR 16 0 H0YE82;H7C1L7;H0YEB7;C9JEV6;H7C3G9;Q9UJ70;Q9UJ70-2 H0YE82 NAGK N-acetyl-D-glucosamine kinase 1 0 SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR ;;; 276.8 1.51E-58 897820000 860410 1003460 838050 300575 1092080 880690 1009320 1030420 805860 1016680 TRUE FALSE FALSE 800099.7022 923942.1751 1162565.404 699753.7902 955101.1432 772039.422 756777.4605 795815.8599 875712.5936 762096.7105 1.049866364 1.21236867 1.525482774 0.918195526 1.253254515 1.013046522 0.993020243 1.044245237 1.149083288 1 19.53961456 -5.287796033 24.99941802 1.059004283 1.25755236 0.322848653 0.138853036 896.7426738 850563.0654 0.038942619 0.05778041 5.15E-06 5.287796033 0.198548077 SLGNILQAKPTS(ph)SPAK ddPTM_HeLa_A485_30min_R1 1 SLGNILQAKPTSSPAK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.2)S(0.438)S(0.362)PAK 47.808 0.027378 2254500000 230020 162370 135330 321890 171540 180980 247460 243700 167830 403710 TRUE FALSE FALSE 281187.1554 181357.7591 185394.1986 339474.0356 154460.8753 190455.833 194588.1494 183932.1929 201511.9416 303072.5267 0.927788337 0.598397225 0.61171562 1.120108244 0.509649875 0.628416686 0.642051431 0.606891673 0.664896762 1 18.20930355 -10.34364977 3.200838521 1.002404855 0.695499362 0.210018452 0.173604162 43239890.14 59202970.72 984961.9301 0.043051521 4.53E-11 10.34364977 -0.306905494 SLGNILQAKPTS(ph)SPAK ddPTM_HeLa_A486_30min_R1 1 SLGNILQAKPTSSPAK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.113)S(0.5)S(0.387)PAK 56.327 0.017334 4087300000 195170 191680 79320 104640 137630 215050 259850 253860 143600 350220 TRUE FALSE FALSE 181489.5909 176490.5787 110034.8283 243607.2082 120367.1621 188519.3175 194832.7816 196061.6197 156047.3636 262522.6325 0.691329312 0.672287098 0.41914416 0.927947453 0.458502038 0.718106914 0.742156132 0.746837017 0.594414897 1 18.00208228 -14 0.256828368 3.117688096 0.637023211 0.342707144 0.139334767 211.1765788 2.084277345 235.5263865 0.181425722 1.00E-14 14 -2.480664885 SLGNILQAKPTS(ph)SPAKGPPQK ddPTM_HeLa_A485_30min_R1 1 SLGNILQAKPTSSPAKGPPQK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.096)S(0.472)S(0.432)PAKGPPQK 176.53 1.54E-14 4363100000 1029100 674700 370990 1313000 904420 1080300 1884500 1847000 745650 1831700 TRUE FALSE FALSE 1258019.745 753600.2959 508234.6392 1384725.865 814372.7692 1136862.838 1481861.18 1394020.354 895295.1155 1375090.9 0.91486297 0.548036712 0.369600758 1.007006784 0.592231953 0.82675468 1.07764598 1.013765966 0.651080678 1 20.39109556 -6.501658695 6.510988723 0.939424891 0.681069988 0.259730551 0.198751329 0.236952161 40.50718079 0.073034912 0.061418396 3.15E-07 6.501658695 -0.258354903 SLGNILQAKPTSS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 SLGNILQAKPTSSPAK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.052)S(0.196)S(0.752)PAK 89.507 0.00052686 2320800000 562860 340670 230850 961770 471360 426290 656710 478390 398530 1271000 TRUE FALSE FALSE 688066.2652 380508.3931 316251.0215 1014309.06 424429.7434 448609.8852 516398.5437 361064.1024 478511.3155 954163.091 0.721120185 0.398787583 0.331443361 1.063035313 0.444818865 0.470160594 0.541205742 0.378409211 0.501498454 1 19.86387636 -10.52172535 2.582513643 1.027066646 0.534685243 0.317190596 0.20285283 10088384.59 9619771.996 1911081.18 0.052162192 3.01E-11 10.52172535 -0.492381403 SLGNILQAKPTSS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 SLGNILQAKPTSSPAK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPTS(0.016)S(0.984)PAK 146.1 3.55E-08 4048100000 1376300 1305800 448240 687770 857070 1786100 1820800 1692900 1179500 2491600 TRUE FALSE FALSE 1279828.477 1202323.652 621810.5323 1601163.318 749568.2887 1565749.142 1365216.582 1307463.626 1281740.01 1867687.142 0.685247785 0.643750029 0.332930777 0.857297393 0.401335037 0.838335879 0.730966419 0.70004424 0.686271261 1 20.83282138 -11.00296636 0.178900476 1.454821843 0.538271616 0.344898932 0.153743553 40.517348 1.056455696 8.219096994 0.553426498 9.93E-12 11.00296636 -0.916550227 SLGNILQAKPTSS(ph)PAKGPPQK ddPTM_HeLa_A485_30min_R1 1 SLGNILQAKPTSSPAKGPPQK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.018)S(0.078)S(0.904)PAKGPPQK 140.32 5.22E-08 28635000000 7578300 5022900 2522600 10593000 7005700 7597900 13913000 13210000 4484900 12688000 TRUE FALSE FALSE 9264066.69 5610284.462 3455814.714 11171668.77 6308187.909 7995714.295 10940373.89 9970226.788 5384978.292 9525115.105 0.972593673 0.588999125 0.362810809 1.172864437 0.662268943 0.839434926 1.148581804 1.046730321 0.56534522 1 23.1833051 -5.263587539 24.99987544 0.916778865 0.636221005 0.234939541 0.229677655 281.4946917 3275995.737 0.064147035 0.100664724 5.45E-06 5.263587539 -0.28055786 SLGNILQAKPTSS(ph)PAKGPPQK ddPTM_HeLa_A486_30min_R1 2 SLGNILQAKPTSSPAKGPPQK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPTS(0.029)S(0.97)PAKGPPQK;SLGNILQAKPTS(0.032)S(0.967)PAKGPPQK ; 238.63 1.86E-46 9654600000 3979300 2892700 1113530 2160490 2706000 4132100 5744900 5193300 2510200 6629100 TRUE FALSE FALSE 3700371.619 2663471.917 1544718.637 5029729.905 2366588.248 3622323.514 4307465.257 4010898.959 2727786.157 4969130.212 0.744671897 0.536003647 0.310862982 1.012195232 0.476258047 0.728965304 0.866844915 0.807163183 0.548946403 1 22.24456192 -14 0.086495616 2.05597472 0.385602804 0.215835881 0.194155415 339.1611778 2.048478521 66.96326005 5.178807338 1.00E-14 14 -1.670371916 SLGS(ph)PLLHER ddPTM_HeLa_A485_30min_R1 4 SLGSPLLHER 10 0 H7C3L4;E7EQA9;Q92844;E7EV32;E7EMT6;E7ENY2;E7EVA2;E7EW82 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 SLGS(1)PLLHER;S(0.001)LGS(0.999)PLLHER;SLGS(1)PLLHER;S(0.443)LGS(0.557)PLLHER ;;; 141.37 5.10E-06 884790000 404448 585270 587940 444275 649470 578500 659460 715600 519750 558310 TRUE FALSE FALSE 494416.0623 653712.2353 805443.4722 468544.6183 584806.4864 608789.3655 518560.9837 540097.978 624059.0576 419133.5919 1.179614499 1.55967512 1.921686755 1.11788849 1.395274675 1.452494806 1.237221243 1.288605801 1.48892637 1 18.67705063 -12.79852816 0.161529082 5.64E-09 1.530872215 0.236687851 0.217989269 124.8109533 1.644408086 42.04092235 0.973628933 1.59E-13 12.79852816 1.53087221 SLGS(ph)PLLHER ddPTM_HeLa_A486_30min_R1 4 SLGSPLLHER 10 0 H7C3L4;E7EQA9;Q92844;E7EV32;E7EMT6;E7ENY2;E7EVA2;E7EW82 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 S(0.154)LGS(0.846)PLLHER;S(0.002)LGS(0.998)PLLHER;S(0.032)LGS(0.968)PLLHER;S(0.199)LGS(0.801)PLLHER ;;; 110.9 0.00051583 614620000 525120 547280 463850 147453 624320 472470 526560 565110 472052 566060 TRUE FALSE FALSE 488311.7997 503911.5396 643465.1423 343278.0359 546011.964 414181.4551 394809.1186 436446.7893 512969.8474 424314.8916 1.150824092 1.187588627 1.516480225 0.809017177 1.286808394 0.976118122 0.930462556 1.028591732 1.208936706 1 18.69477579 -5.263064409 24.99999247 1.039241043 1.275226735 0.352179039 0.155537628 170.1767356 2618069.673 0.042335093 0.066723575 5.46E-06 5.263064409 0.235985692 SLGS(ph)VQAPSYGAR ddPTM_HeLa_A485_30min_R1 1 SLGSVQAPSYGAR 13 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.002)LGS(0.998)VQAPSYGAR 91.789 0.0014784 637660000 192420 170410 134800 295800 272370 157810 295210 199480 178490 329800 TRUE FALSE FALSE 235223.1652 190337.9671 184668.1295 311958.805 245251.8865 166072.6876 232135.9719 150557.2172 214311.3058 247586.9295 0.950062936 0.768772275 0.745871884 1.259997067 0.990568795 0.670765165 0.937593807 0.608098406 0.865600241 1 17.91757563 -6.239372915 24.69927329 0.799491546 0.940025564 0.11791027 0.169973098 1487.396147 1664861.909 0.057638258 0.057588351 5.76E-07 6.239372915 0.140534018 SLGS(ph)VQAPSYGAR ddPTM_HeLa_A486_30min_R1 4 SLGSVQAPSYGAR 13 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 SLGS(1)VQAPSYGAR;SLGS(1)VQAPSYGAR;SLGS(1)VQAPSYGAR;SLGS(1)VQAPSYGAR ;;; 165.36 7.14E-12 2049320000 1700640 1832110 1385490 1104980 1692080 2169430 2651380 2470410 1504180 2620580 TRUE FALSE FALSE 1581433.918 1686926.931 1921988.833 2572449.283 1479843.548 1901787.784 1987976.681 1907951.572 1634563.534 1964369.711 0.805059205 0.858762443 0.978425203 1.309554545 0.753342683 0.968141472 1.01201758 0.971279266 0.832105853 1 20.90563505 -4.682626515 4.187061472 0.981826591 0.819794112 0.160481634 0.135626402 0.38113784 12.39005392 0.035479971 0.101891233 2.08E-05 4.682626515 -0.16203248 SLGSASPGPGQPPLS(ph)SPTR ddPTM_HeLa_A485_30min_R1 1 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 SLGSASPGPGQPPLS(0.491)S(0.491)PT(0.018)R 129.05 4.30E-06 110580000 122650 119110 80741 123620 76023 98669 119590 104790 88826 246470 TRUE FALSE FALSE 149933.0694 133038.8784 110610.4558 130373.0476 68453.88319 103835.1563 94038.61954 79090.0882 106652.5634 185029.5649 0.810319526 0.719014166 0.597798821 0.704606573 0.369961866 0.561181432 0.508235641 0.42744568 0.576408227 1 17.49739628 -10.21295506 4.006114016 1.000295307 0.579798823 0.488369354 0.126942547 62957009.3 90559626.32 217370.6283 0.033734002 6.12E-11 10.21295506 -0.420496484 SLGSASPGPGQPPLSS(ph)PTR ddPTM_HeLa_A485_30min_R1 3 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 SLGSASPGPGQPPLS(0.038)S(0.958)PT(0.003)R;SLGSASPGPGQPPLS(0.066)S(0.927)PT(0.007)R;SLGSASPGPGQPPLS(0.304)S(0.693)PT(0.003)R ;; 264.92 2.22E-58 508340000 441225 510632 336369 488644 356314 421807 538350 484644 386458 927130 TRUE FALSE FALSE 539373.979 570345.9705 460805.8906 515337.3844 320838.1271 443892.1623 423327.1246 365784.2991 464016.5758 696013.5536 0.774947523 0.819446644 0.662064536 0.740412858 0.460965344 0.637763676 0.608216783 0.52554192 0.6666775 1 19.40875587 -9.988833579 3.20254751 1.000193488 0.65125064 0.502292467 0.102927464 4937913.409 7943167.713 11061.1964 0.028575344 1.03E-10 9.988833579 -0.348942848 SLGSASPGPGQPPLSS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 SLGSASPGPGQPPLS(0.009)S(0.983)PT(0.009)R;SLGSASPGPGQPPLS(0.126)S(0.873)PT(0.002)R;SLGSASPGPGQPPLS(0.064)S(0.93)PT(0.006)R ;; 288.3 1.65E-70 368400000 305240 314068 300711 127379 428236 369136 368430 335466 366496 505630 TRUE FALSE FALSE 283844.2523 289180.1079 417154.3525 296544.7494 374522.6477 323595.7534 276244.9171 259087.715 398264.1684 379016.9569 0.748895919 0.762974064 1.100621872 0.782404966 0.988142195 0.853776454 0.7288458 0.683578163 1.050781927 1 18.53190287 SLGSVQAPSYGARPVSSAASVYAGAGGS(ph)GSR ddPTM_HeLa_A485_30min_R1 4 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 SLGSVQAPSYGARPVSSAASVYAGAGGS(0.766)GS(0.234)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.739)GS(0.261)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.817)GS(0.183)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.928)GS(0.072)R ;;; 267.09 2.57E-64 11986620000 1044863 1443410 1256140 863251 1675240 1279610 1522830 2292050 921053 1013849 TRUE FALSE FALSE 1277289.17 1612204.244 1720838.458 910408.2163 1508447.223 1346608.401 1197464.93 1729921.144 1105899.889 761115.1028 1.678181349 2.118213444 2.260943781 1.196150507 1.981891067 1.769257233 1.573303336 2.272877174 1.452999533 1 19.53775512 -8.002422337 23.96269331 0.999999976 1.849315387 0.429914723 0.31260649 39.22776134 388064.5552 0.294684979 0.076087334 9.94E-09 8.002422337 0.849315411 SLGSVQAPSYGARPVSSAASVYAGAGGS(ph)GSR ddPTM_HeLa_A486_30min_R1 5 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 SLGSVQAPSYGARPVSSAASVYAGAGGS(0.979)GS(0.021)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.977)GS(0.023)R;SLGSVQAPSYGARPVS(0.003)S(0.007)AAS(0.002)VYAGAGGS(0.938)GS(0.05)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.929)GS(0.071)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.947)GS(0.053)R ;;;; 244.01 7.58E-51 9660530000 1179092 1107845 921082 446135.4 1375254 902653 1242041 1396688 951882 1173081 TRUE FALSE FALSE 1096443.74 1020055.327 1277749.618 1038625.758 1202756.82 791292.8504 931269.2048 1078692.632 1034391.898 879333.8821 1.246902641 1.16003187 1.45308812 1.181150617 1.367804476 0.899877585 1.059062119 1.226715647 1.176335769 1 19.74605153 -6.242248173 24.98554993 1.085734424 1.278955765 0.448514846 0.115603299 865.6084515 1126959.602 0.038938872 0.038883041 5.72E-07 6.242248173 0.19322134 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR ddPTM_HeLa_A485_30min_R1 2 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 303.25 2.08E-95 225760000 46488 68971 70994 41520 79549 63330 101255 112423 51179 58894 FALSE FALSE TRUE 56829.09522 77036.55848 97257.63491 43788.13247 71628.82225 66645.86087 79621.04207 84851.08298 61450.15586 44212.80966 1.285353626 1.742403595 2.199761464 0.990394702 1.620092068 1.507388048 1.800859133 1.919151568 1.389872219 1 15.4321768 -8.008682271 22.91585331 0.999999972 1.636441807 0.278432832 0.315131205 157.2073759 414934.3757 0.303243383 0.078297105 9.80E-09 8.008682271 0.636441835 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR ddPTM_HeLa_A486_30min_R1 2 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 303.11 2.36E-95 122584000 37085 33246 32267 12946.9 43421 25893.2 30474.9 39652.6 26398.3 34894.5 FALSE FALSE TRUE 34485.53301 30611.46588 44761.64654 30141.0375 37974.7333 22698.76025 22849.75769 30624.56859 28686.5259 26156.69007 1.318421135 1.170311144 1.711288638 1.152326132 1.451817229 0.867799411 0.873572215 1.170812075 1.0967185 1 14.67489237 -6.257197469 24.99444069 1.004443179 1.358134381 0.530898034 0.168735892 305.3883845 1799430.343 0.056807227 0.054898155 5.53E-07 6.257197469 0.353691202 SLGTADVHFER ddPTM_HeLa_A485_30min_R1 4 SLGTADVHFER 11 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 0 ;;; ;;; 129.84 0.00054877 341097000 201836 321112 313027 199479 371900 291577 328022 396751 294571 329108 FALSE FALSE TRUE 246733.7219 358663.2551 428828.7134 210376.0327 334872.3302 306843.5209 257937.42 299447.1952 353688.6977 247067.4324 0.998649314 1.451681639 1.735674788 0.851492366 1.355388393 1.241942404 1.043996036 1.212005938 1.431547227 1 17.91454533 -5.262777034 24.9984687 1.177602091 1.400969865 0.173831143 0.231002385 221.020843 4130530.639 0.06372771 0.100625483 5.46E-06 5.262777034 0.223367774 SLGVLPFTLNSGS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 SLGVLPFTLNSGSPEK 16 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 SLGVLPFTLNS(0.056)GS(0.944)PEK;SLGVLPFTLNS(0.001)GS(0.999)PEK ; 282.52 8.27E-59 1354340000 1722750 1457490 1021200 2660200 1687130 1293890 2218610 1857320 1382700 3574400 TRUE FALSE FALSE 2105969.794 1627930.777 1398984.376 2805519.99 1519153.413 1361636.08 1744585.849 1401809.358 1660195.207 2683367.862 0.784823365 0.606674471 0.521353928 1.045521946 0.566136844 0.507435488 0.650147851 0.522406703 0.618698327 1 21.35561342 -10.08857768 5.564198188 1.000003022 0.643802176 0.320378536 0.154166436 5.83E-06 9.54E-07 0.150439177 0.03648655 8.15E-11 10.08857768 -0.356200846 SLGVLPFTLNSGS(ph)PEK ddPTM_HeLa_A486_30min_R1 2 SLGVLPFTLNSGSPEK 16 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 SLGVLPFTLNS(0.001)GS(0.999)PEK;SLGVLPFTLNS(0.088)GS(0.912)PEK ; 198.51 4.41E-25 1936410000 3114800 2796500 1273270 1554090 1921630 3017700 3601200 3150400 2288580 4348300 TRUE FALSE FALSE 2896468.605 2574895.155 1766314.243 3618000.059 1680601.247 2645406.856 2700141.67 2433122.693 2486955.957 3259457.377 0.888635214 0.78997663 0.541904384 1.110000727 0.515607677 0.811609587 0.828402203 0.746480905 0.762996925 1 21.63620038 -10.72396502 2.687678398 1.040862291 0.774436025 0.150195031 0.158794293 56857638.94 47321423.82 15608062.9 0.03693968 1.89E-11 10.72396502 -0.266426266 SLGVSNFNRR ddPTM_HeLa_A485_30min_R1 1 SLGVSNFNRR 10 1 P51857-2;P51857 P51857-2 AKR1D1 3-oxo-5-beta-steroid 4-dehydrogenase 0 0 128.01 0.0013322 41669000 40261 61901 53449 37598 67905 61074 83676 99680 49923 58810 FALSE FALSE TRUE 49216.92055 69139.78348 73222.0093 39651.88354 61144.13977 64271.7402 65797.93903 75233.32371 59942.08818 44149.74932 1.114772367 1.566028903 1.658492074 0.898122507 1.384926092 1.455766821 1.490335507 1.704048718 1.3576994 1 15.43011763 -6.001170288 24.99936823 1.44770161 1.326238633 0.011254831 0.259234795 169.736464 3625987.656 0.081245084 0.090942984 9.97E-07 6.001170288 -0.121462977 SLGVSNFNRR ddPTM_HeLa_A486_30min_R1 2 SLGVSNFNRR 10 1 P51857-2;P51857 P51857-2 AKR1D1 3-oxo-5-beta-steroid 4-dehydrogenase 0 0 ; ; 133.89 0.00013776 18296000 45270 36412 35439 14087.5 57242 37525 47139 48543 33534 53668 FALSE FALSE TRUE 42096.80677 33526.58051 49161.92989 32796.41194 50062.1746 32895.54703 35344.32361 37490.81859 36440.75412 40229.18348 1.046424589 0.833389535 1.222046426 0.815239314 1.244424328 0.817703572 0.878574223 0.931930886 0.905828828 1 15.29595484 SLGYHGSSYS(ph)PEGVEPVS(ph)PVS(ph)SPSLTHDK ddPTM_HeLa_A485_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 3 0 S(0.005)LGY(0.002)HGS(0.095)S(0.381)Y(0.089)S(0.427)PEGVEPVS(0.998)PVS(0.429)S(0.382)PS(0.096)LT(0.096)HDK 77.531 0.0019233 168440000 25080 36804 30767 19219 44993 25368 35677 33844 27259 33686 TRUE FALSE FALSE 30658.95948 41107.90765 42148.99362 20268.8853 40513.33894 26696.22925 28054.3175 25543.70593 32729.63127 25288.70014 1.212358061 1.625544509 1.666712539 0.801499689 1.602033268 1.055658421 1.109361784 1.010083784 1.294239367 1 14.62620526 -5.242228222 24.99641396 1.141490235 1.513938989 0.361046106 0.228792256 893.3001144 1162307.461 0.059748989 0.103272537 5.72E-06 5.242228222 0.372448754 SLGYHGSSYS(ph)PEGVEPVS(ph)PVS(ph)SPSLTHDK ddPTM_HeLa_A486_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 3 0 S(0.002)LGYHGS(0.073)S(0.425)Y(0.012)S(0.488)PEGVEPVS(1)PVS(0.461)S(0.402)PS(0.069)LT(0.069)HDK 122.35 8.03E-06 264010000 131940 154030 132840 23859 165200 92520 120370 109600 124560 48290 TRUE FALSE FALSE 122691.6873 141824.1018 184279.2056 55544.95777 144479.0756 81105.82307 90252.15286 84646.47255 135356.9611 36197.86968 3.389472596 3.918023438 5.09088538 1.5344814 3.99136957 2.240624207 2.493300121 2.33843796 3.739362627 1 15.14361717 -5.259786863 24.99980255 2.586519156 4.111316729 0.396519516 0.929211193 156.5918299 2368953.808 0.243658109 0.395297508 5.50E-06 5.259786863 1.524797573 SLGYHGSSYS(ph)PEGVEPVS(ph)PVSSPSLTHDK ddPTM_HeLa_A486_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 SLGYHGS(0.003)S(0.003)YS(0.995)PEGVEPVS(1)PVSSPSLTHDK 195.91 6.65E-22 435500000 215840 236700 221070 12308 314850 119030 148290 146440 229080 32968 TRUE FALSE FALSE 200710.7306 217943.03 306674.2245 28653.64601 275358.5771 104345.2888 111186.2735 113098.8088 248936.8388 24712.59821 8.121797994 8.819106274 12.40963098 1.159475251 11.14243734 4.222352013 4.499173765 4.576564867 10.07327666 1 14.59295908 -6.062770609 0.128832295 5.28E-12 13.95895589 0.236195698 3.371372245 24.20771357 1.188796565 39.31632823 83.72804427 8.65E-07 6.062770609 13.95895589 SLGYHGSSYS(ph)PEGVEPVSPVS(ph)SPSLTHDKGLPK ddPTM_HeLa_A485_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDKGLPK 33 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 S(0.067)LGY(0.002)HGS(0.122)S(0.122)Y(0.007)S(0.557)PEGVEPVS(0.478)PVS(0.487)S(0.12)PS(0.035)LT(0.004)HDKGLPK 94.266 7.52E-05 127250000 16116 54848 24998 21112 59716 47046 51474 129440 27995 23024 TRUE FALSE FALSE 19700.9486 61261.99649 34245.80045 22265.2951 53770.46536 49509.25581 40476.1594 97694.63705 33613.33971 17284.54053 1.139801696 3.544323113 1.981296547 1.288162394 3.11089932 2.864366324 2.341755011 5.652139662 1.944705424 1 14.07719463 -5.79820161 24.94674235 3.029993611 2.099025742 0.075672761 1.279155241 380.6490791 258305.3342 0.386136664 0.437849951 1.59E-06 5.79820161 -0.930967869 SLGYHGSSYSPEGVEPVS(ph)PVS(ph)SPSLTHDK ddPTM_HeLa_A485_30min_R1 2 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 SLGYHGSSYSPEGVEPVS(1)PVS(0.499)S(0.499)PS(0.002)LTHDK;S(0.001)LGYHGS(0.001)S(0.001)YSPEGVEPVS(0.952)PVS(0.462)S(0.423)PS(0.08)LT(0.08)HDK ; 198.74 8.01E-29 1269690000 127811 264584 271642 100286 333434 158770 182729 186455 190723 134349 TRUE FALSE FALSE 156242.116 295524.7972 372133.6798 105764.3702 300236.1402 167082.9517 143687.4564 140726.6189 228999.3567 100858.2668 1.54912553 2.930099897 3.689669588 1.048643543 2.976812409 1.656611371 1.424647289 1.395290871 2.270506563 1 16.62196981 -6.381231214 6.863680205 1.554800387 2.45657093 0.258668005 0.754059178 0.369175571 19.35786584 0.264642287 0.232703235 4.16E-07 6.381231214 0.901770543 SLGYHGSSYSPEGVEPVS(ph)PVSSPSLTHDK ddPTM_HeLa_A485_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SLGYHGSSYSPEGVEPVS(0.989)PVS(0.009)S(0.002)PSLTHDK 302.41 1.06E-92 561940000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SLGYHGSSYSPEGVEPVS(ph)PVSSPSLTHDK ddPTM_HeLa_A486_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SLGYHGSSYSPEGVEPVS(0.998)PVS(0.002)SPSLTHDK 277.33 2.26E-77 572430000 309510 325670 379960 6470 440000 152810 173690 203070 320440 54266 TRUE FALSE FALSE 287814.9473 299862.7231 527090.6877 15062.48698 384811.0972 133957.8559 130230.9249 156835.394 348215.9972 40677.44039 7.075542231 7.371720548 12.95781354 0.370290924 9.460061732 3.293173184 3.201551613 3.855586598 8.560420565 1 15.31194128 -5.260410236 24.99999483 4.501401201 8.958694709 0.340622912 3.09861353 112.4706819 2732109.398 0.825013782 1.330595271 5.49E-06 5.260410236 4.457293508 SLGYHGSSYSPEGVEPVSPVS(ph)S(ph)PSLTHDK ddPTM_HeLa_A486_30min_R1 1 SLGYHGSSYSPEGVEPVSPVSSPSLTHDK 29 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 S(0.003)LGY(0.002)HGS(0.036)S(0.067)Y(0.059)S(0.066)PEGVEPVS(0.462)PVS(0.495)S(0.495)PS(0.222)LT(0.093)HDK 45.489 0.024286 391100000 43285 45826 40910 14008 69312 42044 50563 42630 42023 22560 TRUE FALSE FALSE 40250.94502 42194.58086 56751.44761 32611.33193 60618.24265 36857.03875 37911.6026 32924.07961 45665.58748 16910.82916 2.38018755 2.49512194 3.355923419 1.928428915 3.58458134 2.179493294 2.241853563 1.946922844 2.700375425 1 14.04565978 -10.14626717 0.282794433 0.00970855 2.754037412 0.454367399 0.515720351 14.48455527 0.938968433 11.67011497 0.632129467 7.14E-11 10.14626717 2.744328862 SLHDALCVLAQTVK ddPTM_HeLa_A485_30min_R1 1 SLHDALCVLAQTVK 14 0 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 152.74 1.58E-06 13146000 13254 28681 21138 11793 18266 31603 22465 29211 16724 14861 FALSE FALSE TRUE 16202.30657 32034.99346 28957.82583 12437.22173 16447.3729 33257.68421 17665.16923 22046.95645 20080.3534 11156.4262 1.452284655 2.871438657 2.595618464 1.114803389 1.474251038 2.981033857 1.583407528 1.976166566 1.799891206 1 13.44558733 -10.82617357 0.266753153 1.16E-11 2.135541173 0.200163936 0.601152361 47.22546551 2.053884375 30.9411775 0.85630542 1.49E-11 10.82617357 2.135541173 SLHDALCVLAQTVK ddPTM_HeLa_A486_30min_R1 2 SLHDALCVLAQTVK 14 0 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 0 ; ; 140.08 6.40E-06 28175000 30718 34585 29749 6607.7 43758 34745 38273 35595 32589 28499 FALSE FALSE TRUE 28564.82683 31844.35864 41268.60951 15383.05953 38269.46361 30458.51516 28696.69059 27490.79553 35413.84076 21362.6649 1.337137804 1.490654784 1.931809992 0.72009085 1.791418055 1.425782565 1.343310431 1.286861712 1.657744524 1 14.38280401 -10.75566525 2.718597298 0.904895498 1.439540016 0.152862782 0.312606335 22150062.75 18104337.41 14160626.29 0.073977755 1.76E-11 10.75566525 0.534644518 SLHDALCVVK(ac)R ddPTM_HeLa_A485_30min_R1 2 SLHDALCVVKR 11 1 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 1 ; SLHDALCVVK(1)R;SLHDALCVVK(1)R 169.52 1.17E-05 308720000 121068 197909 229310 73046 225340 136688 165995 163141 185519 142475 FALSE TRUE FALSE 147999.1589 221052.736 314141.3114 77036.31802 202904.3584 143844.7723 130528.8122 123130.414 222750.9616 106958.6046 1.383705028 2.066712976 2.937036367 0.720244232 1.897036327 1.344863958 1.220367569 1.1511969 2.082590387 1 16.70669302 -5.269176409 24.99974865 1.369265147 2.12290762 0.328676125 0.512607499 688.267222 2223915.983 0.141099197 0.21373844 5.38E-06 5.269176409 0.753642472 SLHDALCVVK(ac)R ddPTM_HeLa_A486_30min_R1 2 SLHDALCVVKR 11 1 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 1 ; SLHDALCVVK(1)R;SLHDALCVVK(1)R 145.91 0.0011736 293320000 151595 181076 195834 6622.1 238290 130511 151357 156361 176291 83692 FALSE TRUE FALSE 140968.9733 166726.8783 271666.1694 15416.58346 208401.4462 114409.8798 113485.8777 120761.0136 191572.0458 62734.97846 2.24705542 2.657638249 4.330377982 0.245741432 3.321933814 1.823701587 1.808972929 1.924939111 3.053671979 1 15.93698243 -5.246232297 24.94547679 1.975684462 3.036285027 0.237759772 0.970232439 1272.605808 2087560.975 0.252270156 0.43477099 5.67E-06 5.246232297 1.060600565 SLHGEFSAS(ph)DSS(ph)LTDIQETR ddPTM_HeLa_A485_30min_R1 2 SLHGEFSASDSSLTDIQETR 20 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 2 0 S(0.005)LHGEFS(0.201)AS(0.794)DS(0.362)S(0.629)LT(0.01)DIQETR;SLHGEFS(0.001)AS(0.998)DS(0.328)S(0.665)LT(0.008)DIQETR ; 110.94 2.47E-05 392320000 98869 138330 147408 65691 178188 100563 121298 134113 104353 94710 TRUE FALSE FALSE 120862.068 154506.4902 201940.3534 69279.53299 160446.9771 105828.3232 95381.69139 101221.5765 125295.6899 71100.54001 1.699875528 2.173070559 2.840208434 0.974388281 2.256621076 1.488432059 1.341504458 1.423640052 1.762232606 1 16.1175729 -5.930617529 0.855225083 1.389260309 2.144414889 0.266733063 0.477048333 0.861460669 1.386938517 0.263055331 0.354937795 1.17E-06 5.930617529 0.75515458 SLHLS(ph)PQEQSASYQDR ddPTM_HeLa_A485_30min_R1 2 SLHLSPQEQSASYQDR 16 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 SLHLS(1)PQEQSASYQDR;SLHLS(1)PQEQSASYQDR ; 221.86 6.01E-34 1253300000 460550 600570 710930 383930 728900 479960 599260 617850 624970 648690 TRUE FALSE FALSE 562997.7586 670801.4372 973932.5913 404903.1237 656328.1567 505089.9634 471223.2055 466321.3187 750395.7464 486983.5213 1.156092011 1.377462292 1.999929256 0.831451386 1.347742024 1.037180811 0.96763686 0.957571044 1.540905829 1 18.89351343 -5.284932595 24.99976577 1.098233127 1.497791492 0.319850691 0.276221814 924.3994505 983676.4642 0.076948148 0.114206141 5.19E-06 5.284932595 0.399558365 SLHLS(ph)PQEQSASYQDR ddPTM_HeLa_A486_30min_R1 2 SLHLSPQEQSASYQDR 16 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 SLHLS(1)PQEQSASYQDR;S(0.001)LHLS(0.999)PQEQSASYQDR ; 195.53 7.87E-19 1005640000 779970 819650 723770 76680 1007440 813140 892030 963300 821560 464830 TRUE FALSE FALSE 725298.1308 754697.9489 1004033.127 178514.9152 881077.4812 712823.0542 668834.6591 743977.6187 892773.4823 348433.5425 2.081596753 2.165973871 2.88156278 0.512335621 2.528681581 2.045793436 1.919547281 2.135206655 2.562248961 1 18.41052399 -10.23599226 4.811869953 0.999772627 2.079057119 0.230968046 0.597622933 0.001405731 0.000223196 0.55799934 0.135307087 5.81E-11 10.23599226 1.079284492 SLHLS(ph)PQEQSASYQDRR ddPTM_HeLa_A485_30min_R1 4 SLHLSPQEQSASYQDRR 17 1 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 SLHLS(1)PQEQSASYQDRR;SLHLS(0.995)PQEQS(0.004)ASYQDRR;SLHLS(1)PQEQSASYQDRR;SLHLS(1)PQEQSASYQDRR ;;; 253.13 1.99E-51 4403680000 1142832 728180 691610 465591 765070 937666 972159 1240210 629044 681945 TRUE FALSE FALSE 1397051.036 813334.3167 947465.3193 491025.0574 688896.9445 986760.7419 764449.2878 936046.5529 755287.3609 511948.6618 2.72888893 1.588702886 1.850703772 0.959129487 1.345636772 1.92746034 1.49321474 1.828399257 1.475318557 1 18.96563962 -3.944181564 1.736084391 1.502039563 4.276035318 0.580938756 0.314163412 1.876769798 2.764834198 0.08545489 11.23780414 0.000113715 3.944181564 2.773995755 SLHLS(ph)PQEQSASYQDRR ddPTM_HeLa_A486_30min_R1 4 SLHLSPQEQSASYQDRR 17 1 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 SLHLS(1)PQEQSASYQDRR;SLHLS(1)PQEQSASYQDRR;SLHLS(1)PQEQSASYQDRR;SLHLS(1)PQEQSASYQDRR ;;; 224.36 2.34E-34 2780370000 578497 547818 438634 56047 640853 450898 514422 547332 442334 403101 TRUE FALSE FALSE 537947.3477 504406.9066 608484.8318 130480.2485 560471.241 395270.7892 385708.1746 422716.4518 480675.8673 302161.8859 1.780328271 1.669326709 2.013770963 0.431822326 1.854870741 1.308142448 1.276495126 1.398973436 1.590789209 1 18.20496217 SLHPWYGIT(ph)PTS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 SLHPWYGIT(1)PT(0.002)S(0.829)S(0.169)PK 219.68 2.51E-33 312040000 288360 364620 288700 306490 496760 394490 569640 551340 310610 572640 TRUE FALSE FALSE 352504.6872 407259.1372 395502.1438 323232.7726 447300.8302 415144.8864 447931.7605 416123.0005 372946.5779 429891.3867 0.819985462 0.947353564 0.920004811 0.751894043 1.040497307 0.965697149 1.041964958 0.967972408 0.867536753 1 18.71361268 -5.782155824 24.99998846 0.981332004 0.870362211 0.42983688 0.067721713 253.8497325 306336.8191 0.021225974 0.024093479 1.65E-06 5.782155824 -0.110969793 SLHPWYGIT(ph)PTS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 SLHPWYGIT(0.999)PT(0.006)S(0.797)S(0.198)PK 171.04 4.95E-12 214140000 159900 173610 107490 22541 160900 171650 231420 196690 145450 175480 TRUE FALSE FALSE 148691.8357 159852.5113 149113.0067 52476.58716 140718.4217 150473.5682 173516.2683 151907.9807 158057.7231 131538.6658 1.130404013 1.215251123 1.133605893 0.398944195 1.069787509 1.143949327 1.319127476 1.1548542 1.201606555 1 17.00512742 -6.000163917 25 1.174796218 0.965762842 0.144798167 0.221869111 11.99626307 1830100.361 0.074047079 0.083091179 1.00E-06 6.000163917 -0.209033376 SLHPWYGIT(ph)PTSS(ph)PK ddPTM_HeLa_A485_30min_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 SLHPWYGIT(0.999)PT(0.002)S(0.058)S(0.94)PK 209.45 1.77E-25 316200000 315960 385520 303010 322150 520870 381150 579170 541720 321650 571350 TRUE FALSE FALSE 386244.212 430603.2104 415106.0083 339748.2388 469010.3539 401106.4246 455425.5981 408862.3206 386202.2047 428922.9599 0.90049787 1.003917371 0.967786869 0.792096182 1.093460593 0.935147945 1.061788807 0.953230204 0.900399934 1 18.71035902 -5.779127745 24.99999333 0.989112417 0.926042702 0.191175024 0.073999889 488.8090403 690858.9694 0.022883875 0.026003333 1.66E-06 5.779127745 -0.063069715 SLHPWYGIT(ph)PTSS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 SLHPWYGIT(1)PTS(0.067)S(0.933)PK 200.99 4.26E-25 262760000 460210 498610 306660 65851 516710 495740 668520 576370 440420 466640 TRUE FALSE FALSE 427951.6555 459098.3277 425406.9646 153304.4559 451899.4137 434580.6391 501249.2251 445143.1331 478595.9602 349790.3067 1.223452015 1.312495855 1.216177111 0.438275312 1.291915199 1.242403322 1.432999187 1.272599968 1.368236772 1 18.41613078 SLHPWYGITPTSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SLHPWYGITPT(0.019)S(0.351)S(0.63)PK;SLHPWYGITPTS(0.006)S(0.994)PK ; 217.35 1.32E-33 1462670000 1318180 1589690 1194680 1140870 2025420 1520370 2266400 2333900 1399980 2288700 TRUE FALSE FALSE 1611404.593 1775590.417 1636641.847 1203192.839 1823762.073 1599974.222 1782165.125 1761507.366 1680943.145 1718169.21 0.937861407 1.033419995 0.952549863 0.700276103 1.061456614 0.931208761 1.037246573 1.02522345 0.978333877 1 20.71244069 SLHPWYGITPTSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SLHPWYGITPTS(0.004)S(0.996)PK;SLHPWYGITPTS(0.061)S(0.939)PK ; 223.11 8.64E-34 1586030000 2487000 2246400 1270770 232923 2200900 2138700 2794900 2731500 1859210 1977440 TRUE FALSE FALSE 2312674.143 2068387.083 1762846.176 542256.5153 1924842.599 1874848.939 2095586.459 2109597.078 2020367.82 1482276.153 1.56021814 1.395412777 1.189283234 0.365826917 1.298572196 1.264844567 1.413762513 1.423214611 1.363017151 1 20.49938282 -5.963870445 24.99974593 1.321941647 1.111332817 0.059149648 0.311662599 475.8965029 329293.292 0.10328136 0.117109717 1.09E-06 5.963870445 -0.21060883 SLIEEGGDWDRR ddPTM_HeLa_A485_30min_R1 1 SLIEEGGDWDRR 12 1 H7C531;C9J0E9;Q15008-3;Q15008-2;Q15008;Q15008-4 H7C531 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 110.08 0.0010402 86771000 17528 42111 46596 21488 45457 34463 31300 32443 33352 24021 FALSE FALSE TRUE 21427.04313 47035.51513 63833.79942 22661.83503 40931.14147 36267.42939 24612.4993 24486.30338 40045.44048 18033.00677 1.188212448 2.608301307 3.539831167 1.256686437 2.269790168 2.011169288 1.364858318 1.357860266 2.220674621 1 14.13835235 -6.311409431 1.077103337 1.505075812 2.314324905 0.167237861 0.691988823 0.91094362 2.201525129 0.391225091 0.337192105 4.88E-07 6.311409431 0.809249093 SLIEEGGDWDRR ddPTM_HeLa_A486_30min_R1 1 SLIEEGGDWDRR 12 1 H7C531;C9J0E9;Q15008-3;Q15008-2;Q15008;Q15008-4 H7C531 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 117.79 0.000486 135140000 33682 48336 51592 15124 58309 44110 41039 44073 39516 40570 FALSE FALSE TRUE 31321.06573 44505.67932 71569.80408 35209.43632 50995.34151 38668.15668 30770.60813 34038.54001 42941.2787 30411.00793 1.029925276 1.463472681 2.353417691 1.157785904 1.676871139 1.271518417 1.011824672 1.11928352 1.412030762 1 14.89230601 -6.433946551 4.659588474 1.144417634 1.554885608 0.229782741 0.347304858 0.349001903 13.00271539 0.128590463 0.111113565 3.68E-07 6.433946551 0.410467974 SLIGS(ph)PGR ddPTM_HeLa_A485_30min_R1 8 SLIGSPGR 8 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SLIGS(1)PGR;S(0.004)LIGS(0.996)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR ;;;;;;; 144.65 0.00034591 13204250000 5804730 8052590 7492540 5772460 9130450 7059890 8576310 9290140 6504220 7714800 TRUE FALSE FALSE 7095972.162 8994270.352 10264342.34 6087794.873 8221390.339 7429534.924 6743911.306 7011718.599 7809557.294 5791642.34 1.225208973 1.552974066 1.772267991 1.051134465 1.419526596 1.282802785 1.164421232 1.210661534 1.348418434 1 22.46554108 -5.270406308 24.998967 1.229512808 1.520432723 0.397657063 0.171408266 659.7151117 1839224.062 0.047499954 0.071638693 5.37E-06 5.270406308 0.290919914 SLIGS(ph)PGR ddPTM_HeLa_A486_30min_R1 8 SLIGSPGR 8 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR;SLIGS(1)PGR ;;;;;;; 137.85 0.00017094 12359270000 7207480 7422010 6196810 2199980 8195110 6247550 7084110 7242620 5856450 6763430 TRUE FALSE FALSE 6702272.871 6833862.897 8596380.788 5121664.621 7167202.887 5476790.801 5311590.75 5593633.531 6364091.801 5069823.105 1.321993437 1.347948983 1.695597777 1.010225508 1.413698809 1.080272563 1.04768759 1.103319271 1.255288729 1 22.27350398 -5.725381625 1.236233443 1.108832822 1.421868626 0.367075386 0.168086335 0.497363929 1.597407291 0.066033388 0.099177935 1.88E-06 5.725381625 0.313035804 SLIKT(ph)PER ddPTM_HeLa_A486_30min_R1 3 SLIKTPER 8 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A494BZU9;H0YDS4 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SLIKT(1)PER;S(0.001)LIKT(0.999)PER;SLIKT(1)PER ;; 80.014 0.010855 568500000 818730 776660 380026 346626 659680 839750 1028940 953210 610120 1219900 TRUE FALSE FALSE 761341.2549 715114.6331 527182.2446 806962.8455 576936.7831 736150.183 771488.329 736184.8914 663005.6928 914429.0998 0.832586425 0.782033985 0.576515166 0.882477215 0.63092566 0.80503801 0.843683047 0.805075967 0.725048769 1 19.80251179 -6.503259019 24.39168044 0.826801474 0.739530265 0.169696945 0.105060485 1128.877791 1403449.403 0.035801045 0.031102977 3.14E-07 6.503259019 -0.087271209 SLILPDS(ph)SFDGTESDRPEGAEYINPGER ddPTM_HeLa_A486_30min_R1 1 SLILPDSSFDGTESDRPEGAEYINPGER 28 1 Q99698;Q99698-2 Q99698 LYST Lysosomal-trafficking regulator 1 0 SLILPDS(0.478)S(0.478)FDGT(0.023)ES(0.021)DRPEGAEYINPGER 57.076 0.012379 54939000 20421 28350 18273 11286 22045 24372 26625 22703 22155 26729 TRUE FALSE FALSE 18989.59335 26103.44275 25348.79497 26274.37836 19279.91054 21365.23044 19963.14339 17534.0225 24075.41324 20035.88442 0.947779142 1.302834564 1.265169754 1.311366037 0.962269004 1.066348257 0.996369462 0.875130947 1.201614699 1 14.29029857 -5.768930292 24.99784083 1.012152272 1.217818064 0.361527118 0.123140354 173.531972 579090.524 0.037147923 0.042940623 1.70E-06 5.768930292 0.205665791 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETER ddPTM_HeLa_A485_30min_R1 2 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.5)RIS(0.5)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.625)RIS(0.375)EDETER ; 244.51 4.46E-51 5604390000 436672 494151 378264 506333 466644 451854 564901 532984 430235 633268 TRUE FALSE FALSE 533808.1799 551937.6609 518199.5945 533992.6897 420183.2849 475512.3767 444205.2865 402268.8383 516579.2182 475405.942 1.122847093 1.160981831 1.090014972 1.123235203 0.883841046 1.000223882 0.934370497 0.846158625 1.086606566 1 18.85880041 -5.746719487 24.99704405 0.951717749 1.124445358 0.61293805 0.064385022 149.0836484 253169.8999 0.018241017 0.023446791 1.79E-06 5.746719487 0.172727609 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETER ddPTM_HeLa_A486_30min_R1 2 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.587)RIS(0.412)EDET(0.001)ER;SLIPDIKPLAGQEAVVDLHADDS(0.671)RIS(0.329)EDETER ; 216.7 3.15E-39 5076400000 832100 805830 481990 297980 715340 783150 821860 772290 708620 906180 TRUE FALSE FALSE 773774.087 741973.096 668629.4361 693712.4991 625615.3869 686532.9155 616221.9353 596456.426 770043.7522 679266.6298 1.139131606 1.092314952 0.984340179 1.021266861 0.92101593 1.010697251 0.907187117 0.878088809 1.133639897 1 19.37361846 -4.615698277 1.544369451 0.970706861 1.159780768 0.379548733 0.068441571 0.570441369 2.064144034 0.019441948 0.135063252 2.42E-05 4.615698277 0.189073907 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETERNGDDGTHDK ddPTM_HeLa_A485_30min_R1 7 SLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDK 41 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.5)RIS(0.5)EDETERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.474)RIS(0.474)EDET(0.051)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.333)RIS(0.333)EDET(0.333)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.395)RIS(0.395)EDET(0.211)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.613)RIS(0.384)EDET(0.003)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.584)RIS(0.401)EDET(0.015)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.491)RIS(0.491)EDET(0.017)ERNGDDGTHDK ;;;;;; 230.37 2.35E-41 10282720000 1682164 1494918 1082905 2292332 2126337 2121837 3375960 3712960 1555497 3392370 TRUE FALSE FALSE 2056355.578 1669735.656 1483516.623 2417556.293 1914631.422 2232933.104 2654658.567 2802350.738 1867670.98 2546714.591 0.807454273 0.655643024 0.582521743 0.949284345 0.751804474 0.876789693 1.04238558 1.100378797 0.733364856 1 21.28020586 -5.922563245 1.056430853 0.971201119 0.694745589 0.404624178 0.126117418 0.494986062 1.184236664 0.060202548 0.076723341 1.20E-06 5.922563245 -0.27645553 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETERNGDDGTHDK ddPTM_HeLa_A486_30min_R1 3 SLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDK 41 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.499)RIS(0.499)EDET(0.001)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.367)RIS(0.312)EDET(0.312)ERNGDDGT(0.009)HDK;SLIPDIKPLAGQEAVVDLHADDS(0.354)RIS(0.354)EDET(0.292)ERNGDDGTHDK ;; 220.89 8.57E-41 8268660000 2651088 1992741 1090885 1396455 2365104 2705612 3760993 3279075 1847836 3759200 TRUE FALSE FALSE 2465260.421 1834828.946 1513304.887 3251017.813 2068450.603 2371821.1 2819952.772 2532501.204 2008007.912 2817871.852 0.874866052 0.651139953 0.537038221 1.153713861 0.734047079 0.841706516 1.000738472 0.898728309 0.712597314 1 21.42617457 -5.241238141 24.99348839 0.895825655 0.684027287 0.320834021 0.144967039 1007.780154 1246849.923 0.038604221 0.066759729 5.74E-06 5.241238141 -0.211798368 SLIPDIKPLAGQEAVVDLHADDSRIS(ph)EDETER ddPTM_HeLa_A485_30min_R1 5 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.102)RIS(0.898)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.03)RIS(0.968)EDET(0.002)ER;SLIPDIKPLAGQEAVVDLHADDS(0.01)RIS(0.99)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.17)RIS(0.781)EDET(0.049)ER;SLIPDIKPLAGQEAVVDLHADDS(0.209)RIS(0.78)EDET(0.011)ER ;;;; 217.49 3.47E-39 4919580000 363691 388484 324483 423901 395603 382653 485549 425865 366626 581554 TRUE FALSE FALSE 444592.8082 433913.8244 444522.7646 447057.6383 356215.3763 402688.1194 381807.4896 321420.941 440204.4753 436583.2905 1.01834591 0.993885551 1.018185474 1.023991637 0.815916193 0.922362647 0.874535279 0.736219063 1.008294373 1 18.73589739 -5.746722841 24.98405634 0.880254983 1.012521236 0.369759142 0.076137662 228.1687602 387357.1766 0.021463922 0.027588358 1.79E-06 5.746722841 0.132266253 SLIPDIKPLAGQEAVVDLHADDSRIS(ph)EDETER ddPTM_HeLa_A486_30min_R1 7 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.1)RIS(0.9)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.015)RIS(0.985)EDET(0.001)ER;SLIPDIKPLAGQEAVVDLHADDS(0.066)RIS(0.934)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.004)RIS(0.996)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.046)RIS(0.954)EDETER;SLIPDIKPLAGQEAVVDLHADDS(0.025)RIS(0.972)EDET(0.002)ER;SLIPDIKPLAGQEAVVDLHADDS(0.118)RIS(0.882)EDETER ;;;;;; 276.03 5.52E-78 16463100000 5660612 5482660 3385336 1802678 4682957 5476870 6010450 5358940 4718574 6393810 TRUE FALSE FALSE 5263832.33 5048194.054 4696228.762 4196725.486 4095576.866 4801189.464 4506571.838 4138826.347 5127583.794 4792758.359 1.098288696 1.053296176 0.979859281 0.875638864 0.854534395 1.001759134 0.940287722 0.863558318 1.069860696 1 22.19242477 -4.771938808 2.744366524 0.936184063 1.088167769 0.390789169 0.06515619 0.251571003 3.76562991 0.017431152 0.053005712 1.69E-05 4.771938808 0.151983705 SLIPDIKPLAGQEAVVDLHADDSRIS(ph)EDETERNGDDGTHDK ddPTM_HeLa_A485_30min_R1 1 SLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDK 41 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.212)RIS(0.769)EDET(0.019)ERNGDDGTHDK 140.77 4.10E-09 312050000 45537 39226 30265 67874 58991 67577 90589 87556 43498 98226 TRUE FALSE FALSE 55666.54855 43813.13948 41461.28293 71581.78475 53117.64891 71115.22723 71233.92011 66082.75372 52227.64961 73740.06592 0.754902343 0.5941565 0.562262624 0.970731228 0.720336336 0.964404172 0.966013784 0.896158051 0.708266923 1 16.17016109 -5.259250949 24.99665404 0.884360161 0.632812083 0.540753145 0.106459504 148.1731482 1692450.712 0.029061143 0.047359552 5.50E-06 5.259250949 -0.251548078 SLIPDIKPLAGQEAVVDLHADDSRIS(ph)EDETERNGDDGTHDK ddPTM_HeLa_A486_30min_R1 2 SLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDK 41 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.157)RIS(0.685)EDET(0.157)ERNGDDGTHDK;SLIPDIKPLAGQEAVVDLHADDS(0.015)RIS(0.985)EDETERNGDDGTHDK ; 249.45 3.60E-53 7354300000 1494530 1211670 663700 819690 1489690 1545460 2377380 2120040 994930 2241420 TRUE FALSE FALSE 1389771.165 1115652.856 920702.4145 1908279.745 1302839.189 1354796.858 1782534.379 1637353.172 1081171.333 1680153.843 0.827168995 0.664018275 0.547986971 1.135776794 0.775428509 0.806352861 1.060935215 0.974525743 0.643495438 1 20.68016191 -5.245847914 24.99898589 0.908616095 0.67815411 0.337622263 0.150110845 967.8385675 1551807.321 0.040411126 0.069688652 5.68E-06 5.245847914 -0.230461986 SLIPPIPVS(ph)PPILAPR ddPTM_HeLa_A485_30min_R1 2 SLIPPIPVSPPILAPR 16 0 F8W689;P48382-2;P48382 F8W689 RFX5 DNA-binding protein RFX5 1 0 SLIPPIPVS(1)PPILAPR;SLIPPIPVS(1)PPILAPR ; 59.607 0.028144 31199000 19767.6 28846 26758 20427 33050 23746 30501 31070 25258 29516 TRUE FALSE FALSE 24164.83442 32219.28877 36656.89769 21542.87529 29759.42595 24989.30384 23984.21218 23450.03378 30327.04892 22158.2044 1.090559234 1.454056845 1.654326182 0.97223019 1.343043209 1.127767548 1.08240775 1.058300274 1.36866004 1 14.43555336 -5.272015466 24.99445878 1.144531082 1.405088375 0.315521393 0.177549939 825.0354416 1949804.228 0.049220319 0.073883769 5.35E-06 5.272015466 0.260557293 SLIPPIPVS(ph)PPILAPR ddPTM_HeLa_A486_30min_R1 2 SLIPPIPVSPPILAPR 16 0 F8W689;P48382-2;P48382 F8W689 RFX5 DNA-binding protein RFX5 1 0 SLIPPIPVS(1)PPILAPR;S(0.002)LIPPIPVS(0.998)PPILAPR ; 69.108 0.0093012 28091000 44989 40394 37569 19483 49577 35974 45601 40849 35258 46795 TRUE FALSE FALSE 41835.50342 37193.03233 52116.72293 45357.40862 43358.59037 31535.89364 34191.14748 31548.57443 38314.19183 35077.22742 1.192668478 1.060318476 1.485770877 1.293072798 1.236089439 0.899041799 0.974739168 0.89940331 1.09228108 1 15.0982471 -6.226346305 8.325627782 0.966958952 1.258441715 0.614957138 0.110892804 0.223043189 49.26431593 0.038119442 0.037810451 5.94E-07 6.226346305 0.291482763 SLKES(ph)EQES(ph)EEEILAQK ddPTM_HeLa_A485_30min_R1 3 SLKESEQESEEEILAQK 17 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(0.122)LKES(0.878)EQES(1)EEEILAQK;S(0.001)LKES(0.999)EQES(1)EEEILAQK;S(0.029)LKES(0.971)EQES(1)EEEILAQK ;; 197.28 6.64E-25 1369490000 2191550 1427900 1007640 4352700 2318810 1850440 3294810 2473840 1538880 5582700 TRUE FALSE FALSE 2679052.737 1594880.484 1380407.967 4590476.979 2087941.135 1947326.177 2590846.927 1867126.861 1847719.101 4191035.632 0.639234063 0.380545675 0.329371566 1.095308507 0.49819217 0.464640807 0.61818776 0.445504888 0.440874109 1 21.99887536 -10.1492499 4.132753867 1.000125069 0.546097941 0.30658355 0.20493966 282207042.1 459656525.7 495416.8326 0.051792183 7.09E-11 10.1492499 -0.454027128 SLKES(ph)EQES(ph)EEEILAQK ddPTM_HeLa_A486_30min_R1 3 SLKESEQESEEEILAQK 17 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(0.033)LKES(0.967)EQES(1)EEEILAQK;SLKES(1)EQES(1)EEEILAQK;SLKES(1)EQES(1)EEEILAQK ;; 192.58 4.38E-18 1757020000 3122190 2917480 1055570 2073670 2069960 3902630 4988440 4291180 2353220 6113900 TRUE FALSE FALSE 2903340.604 2686288.26 1464314.973 4827608.557 1810326.315 3421163.19 3740279.55 3314171.99 2557199.004 4582939.645 0.633510548 0.586149604 0.319514348 1.053386894 0.395014217 0.746499726 0.816131095 0.723154186 0.557982256 1 22.12784186 -14 0.127480555 2.117197729 0.504437707 0.228981688 0.197041616 219.6853211 1.776706292 63.31274315 1.546637425 1.00E-14 14 -1.612760022 SLKES(ph)EQES(ph)EEEILAQKK ddPTM_HeLa_A485_30min_R1 4 SLKESEQESEEEILAQKK 18 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(0.001)LKES(0.999)EQES(1)EEEILAQKK;SLKES(1)EQES(1)EEEILAQKK;S(0.02)LKES(0.98)EQES(1)EEEILAQKK;S(0.036)LKES(0.967)EQES(0.997)EEEILAQKK ;;; 124 4.87E-05 4517300000 3350670 2085782 1074247 6064110 3405090 3497960 6785390 6924970 2247399 7809730 TRUE FALSE FALSE 4096014.982 2329696.061 1471655.668 6395376.974 3066067.284 3681107.777 5335635.995 5226610.25 2698431.365 5862908.038 0.698631968 0.397361863 0.251011215 1.090819936 0.522960153 0.62786381 0.910066465 0.891470618 0.460254766 1 22.483185 -5.246883948 24.96252351 0.76927786 0.44383772 0.334082211 0.217210134 951.223023 1631342.335 0.057938184 0.099790849 5.66E-06 5.246883948 -0.32544014 SLKES(ph)EQES(ph)EEEILAQKK ddPTM_HeLa_A486_30min_R1 4 SLKESEQESEEEILAQKK 18 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(0.001)LKES(0.999)EQES(1)EEEILAQKK;SLKES(1)EQES(1)EEEILAQKK;S(0.003)LKES(0.997)EQES(1)EEEILAQKK;S(0.001)LKES(0.999)EQES(1)EEEILAQKK ;;; 135.01 1.81E-05 4228760000 8158000 5935900 1833950 5985100 5049070 8968600 14058000 12070800 4647550 17249900 TRUE FALSE FALSE 7586166.328 5465517.666 2544104.555 13933615.27 4415768.56 7862145.318 10540539.71 9322542.344 5050403.376 12930412.76 0.586691737 0.422687022 0.196753545 1.077584724 0.341502521 0.608035139 0.815174264 0.720977939 0.390583307 1 23.62426499 -14 0.111741691 2.271594202 0.355794251 0.215039194 0.242866642 259.0363124 1.913102444 76.31988553 2.890148411 1.00E-14 14 -1.915799952 SLKESEQES(ph)EEEILAQKK ddPTM_HeLa_A485_30min_R1 3 SLKESEQESEEEILAQKK 18 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 SLKESEQES(1)EEEILAQKK;SLKESEQES(1)EEEILAQKK;SLKES(0.002)EQES(0.998)EEEILAQKK ;; 249.85 2.44E-46 4355910000 1778880 1492460 740140 2635310 2327510 2424890 4593500 5317500 1505490 3780400 TRUE FALSE FALSE 2174585.719 1666990.214 1013948.586 2779270.312 2095774.932 2551853.491 3612061.2 4013374.787 1807628.034 2838015.853 0.766234521 0.587378754 0.357273757 0.979300489 0.738464843 0.899168159 1.272741728 1.414148122 0.636933734 1 21.43645122 -6.005048503 1.230860115 1.100485285 0.604092334 0.37891168 0.238117567 0.446122867 1.412275073 0.107374548 0.122043545 9.88E-07 6.005048503 -0.496392951 SLKESEQES(ph)EEEILAQKK ddPTM_HeLa_A486_30min_R1 4 SLKESEQESEEEILAQKK 18 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 SLKESEQES(1)EEEILAQKK;SLKESEQES(1)EEEILAQKK;SLKESEQES(1)EEEILAQKK;SLKESEQES(1)EEEILAQKK ;;; 299.19 3.85E-79 5640050000 2118810 1433270 531314 1320920 1640730 2063370 3401190 3316260 1107457 3537470 TRUE FALSE FALSE 1970292.361 1319692.465 737053.0099 3075168.516 1434934.344 1808812.388 2550176.288 2561219.991 1203452.264 2651664.487 0.743039842 0.497684557 0.277958623 1.159712524 0.541144761 0.682142253 0.961726606 0.965891426 0.453847864 1 21.33846681 -5.246683252 24.98195958 0.810179241 0.505373395 0.284139402 0.230092472 1088.581325 1842953.543 0.061403678 0.105782144 5.67E-06 5.246683252 -0.304805846 SLKLS(ph)PVQK ddPTM_HeLa_A485_30min_R1 1 SLKLSPVQK 9 1 A0A2R8YFT6;Q92834-4;Q92834-2;Q92834;H7C4H4;A0A2R8Y838;A0A2R8Y414;Q92834-3;Q92834-6 A0A2R8YFT6 RPGR X-linked retinitis pigmentosa GTPase regulator 1 0 S(0.004)LKLS(0.996)PVQK 62.924 0.012519 345640000 335290 298190 162840 571800 405570 442870 644770 622520 339760 858330 TRUE FALSE FALSE 409874.1038 333060.7266 223081.2923 603035.9861 365190.0268 466057.9884 507009.6222 469845.9939 407946.7155 644364.1274 0.636090816 0.516882788 0.346203773 0.935862132 0.566744813 0.723283573 0.786837132 0.729162245 0.633099669 1 19.29751665 -14 0.05228447 2.362364157 1.03E-10 0.391520572 0.143410926 528.7145881 2.034447139 98.41873466 20.53468125 1.00E-14 14 -2.362364157 SLKLS(ph)PVQK ddPTM_HeLa_A486_30min_R1 1 SLKLSPVQK 9 1 A0A2R8YFT6;Q92834-4;Q92834-2;Q92834;H7C4H4;A0A2R8Y838;A0A2R8Y414;Q92834-3;Q92834-6 A0A2R8YFT6 RPGR X-linked retinitis pigmentosa GTPase regulator 1 0 S(0.001)LKLS(0.999)PVQK 85.845 0.0020756 228390000 443150 409150 161620 212650 390770 518550 580110 562200 325330 726640 TRUE FALSE FALSE 412087.4734 376727.4639 224203.5923 495059.9467 341755.9828 454576.5732 434960.3422 434199.3327 353529.8663 544684.6144 0.756561619 0.6916433 0.411620939 0.908892841 0.62743829 0.834568411 0.798554486 0.79715733 0.649054255 1 19.05506159 -5.284857488 24.97530652 0.787696462 0.627111997 0.280947591 0.132071201 1059.527881 1129979.208 0.035872361 0.053242239 5.19E-06 5.284857488 -0.160584466 SLKQPLEQNQTIS(ph)PLSTYEESK ddPTM_HeLa_A485_30min_R1 1 SLKQPLEQNQTISPLSTYEESK 22 1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 SLKQPLEQNQT(0.003)IS(0.995)PLS(0.002)TYEESK 158.83 6.89E-11 248780000 170260 186920 111650 202450 185480 226210 307230 379050 147890 285320 TRUE FALSE FALSE 208133.7496 208778.668 152953.9811 213509.3309 167012.9599 238054.0058 241587.8007 286087.3932 177570.1665 214194.9749 0.971702299 0.974713193 0.714087626 0.996798972 0.779723987 1.111389312 1.127887341 1.335640079 0.829011822 1 17.70856511 -6.279964178 24.13222398 1.104707102 0.888704339 0.302226987 0.144645027 593.5732378 773243.9457 0.049053991 0.043349972 5.25E-07 6.279964178 -0.216002764 SLLFGAMSEMIS(ph)PSEK ddPTM_HeLa_A485_30min_R1 2 SLLFGAMSEMISPSEK 16 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SLLFGAMSEMIS(1)PSEK;SLLFGAMSEMIS(0.998)PS(0.002)EK ; 227.4 4.45E-34 111973000 137835 130097 102876 192300 181771 124613 208860 176051 130656 244800 TRUE FALSE FALSE 168495.9202 145310.7125 140934.1134 202804.8621 163673.241 131137.544 164235.3548 132874.2162 156877.4608 183775.8652 0.91685554 0.790695298 0.766880424 1.103544591 0.890613361 0.713573264 0.893672053 0.723023211 0.853634728 1 17.48758779 -6.059723925 24.9979152 0.820699503 0.892854484 0.049490582 0.114388555 687.8536364 287904.6948 0.037782359 0.037782433 8.72E-07 6.059723925 0.072154981 SLLFGAMSEMIS(ph)PSEK ddPTM_HeLa_A486_30min_R1 2 SLLFGAMSEMISPSEK 16 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SLLFGAMSEMIS(1)PSEK;SLLFGAMSEMIS(0.999)PS(0.001)EK ; 167.29 5.02E-12 103431000 162420 147472 92404 82717 125328 149574 193180 177372 117739 203777 TRUE FALSE FALSE 151035.1967 135785.7816 128185.3035 192569.3563 109608.1936 131121.0806 144844.3208 136988.2676 127944.7113 152749.9128 0.988774356 0.888941795 0.839184135 1.260683903 0.717566325 0.858403636 0.948244867 0.896814048 0.837609063 1 17.22081203 SLLGDSAPTLHLNKGT(ph)PS(ph)QSPVVGR ddPTM_HeLa_A485_30min_R1 2 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 SLLGDSAPTLHLNKGT(1)PS(0.666)QS(0.334)PVVGR;SLLGDSAPTLHLNKGT(0.996)PS(0.638)QS(0.366)PVVGR ; 251.88 5.17E-49 11232300000 2939400 3597020 2890980 2715480 4400450 3927380 5051480 6003330 2975320 4133360 TRUE FALSE FALSE 3593259.389 4017660.199 3960473.806 2863819.796 3962325.747 4133011.544 3972190.031 4531003.905 3572439.433 3102989.421 1.157999239 1.294770834 1.276341382 0.922922836 1.276938207 1.331945097 1.280117168 1.460206043 1.151289595 1 21.56522735 -5.932293259 25 1.278902784 1.170442483 0.056296059 0.147597658 122.4193687 45200.21484 0.044956356 0.050975712 1.17E-06 5.932293259 -0.108460301 SLLGDSAPTLHLNKGT(ph)PS(ph)QSPVVGR ddPTM_HeLa_A486_30min_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 SLLGDSAPTLHLNKGT(1)PS(0.899)QS(0.101)PVVGR 255.84 4.70E-60 7357300000 3487600 3124700 2047800 703510 3764300 2885800 3705300 3661400 2529700 3453400 TRUE FALSE FALSE 3243137.25 2877087.392 2840763.002 1637806.833 3292146.393 2529779.337 2778194.749 2827779.148 2748976.433 2588646.162 1.252831421 1.111425514 1.097393318 0.632688568 1.271763766 0.977259609 1.073223058 1.092377625 1.061935954 1 21.30376635 -4.453177872 2.259199717 1.024297401 1.262469163 0.178052978 0.15177414 0.736646519 5.837260153 0.039969157 0.29572852 3.52E-05 4.453177872 0.238171762 SLLGDSAPTLHLNKGT(ph)PSQS(ph)PVVGR ddPTM_HeLa_A485_30min_R1 2 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 SLLGDSAPTLHLNKGT(0.991)PS(0.335)QS(0.674)PVVGR;SLLGDSAPT(0.001)LHLNKGT(0.998)PS(0.014)QS(0.987)PVVGR ; 142.01 5.08E-09 3956030000 944160 1170990 877110 805730 1508400 1203570 1589890 1845210 882260 1278220 TRUE FALSE FALSE 1154185.135 1307927.094 1201589.489 849744.9897 1358218.4 1266587.064 1250197.013 1392669.354 1059321.489 959583.2779 1.202798299 1.363015722 1.252199279 0.885535429 1.415425249 1.31993449 1.302854106 1.451327244 1.103939089 1 19.87204849 -7.991369975 23.8944429 0.999999963 1.271046927 0.278086571 0.147931831 113.969875 315552.3521 0.14589208 0.037669173 1.02E-08 7.991369975 0.271046964 SLLGDSAPTLHLNKGT(ph)PSQS(ph)PVVGR ddPTM_HeLa_A486_30min_R1 5 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 SLLGDSAPTLHLNKGT(0.998)PS(0.288)QS(0.713)PVVGR;SLLGDSAPTLHLNKGT(0.993)PS(0.49)QS(0.518)PVVGR;SLLGDSAPTLHLNKGT(0.978)PS(0.098)QS(0.924)PVVGR;SLLGDSAPT(0.002)LHLNKGT(0.987)PS(0.014)QS(0.996)PVVGR;SLLGDSAPTLHLNKGT(0.995)PS(0.187)QS(0.818)PVVGR ;;;; 265.75 1.62E-60 6298928000 4185120 3912080 2743395 904394 4646740 3460240 4887700 4980330 3206150 4399350 TRUE FALSE FALSE 3891764.7 3602072.533 3805711.015 2105474.938 4063902.54 3033350.77 3664745.763 3846417.579 3484061.663 3297724.125 1.180136528 1.092290439 1.154041657 0.63846303 1.23233551 0.919831573 1.111295434 1.166385493 1.05650489 1 21.65303928 -9.465631632 14.35395321 0.999999502 1.057896965 0.0121906 0.162913475 0 0 0.153175515 0.037150519 3.42E-10 9.465631632 0.057897463 SLLGDSAPTLHLNKGT(ph)PSQSPVVGR ddPTM_HeLa_A485_30min_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 SLLGDSAPTLHLNKGT(0.994)PS(0.006)QSPVVGR 202.81 2.40E-28 244880000 104910 160180 141460 108270 191210 165100 198050 295580 115220 140390 TRUE FALSE FALSE 128246.8676 178911.6576 193791.9406 114184.5159 172172.461 173744.3807 155734.9996 223088.5415 138343.5971 105393.3567 1.216840146 1.697561054 1.838749108 1.083412841 1.633617777 1.648532566 1.477654802 2.116722994 1.312640583 1 16.68542441 SLLGDSAPTLHLNKGT(ph)PSQSPVVGR ddPTM_HeLa_A486_30min_R1 3 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 SLLGDSAPTLHLNKGT(0.824)PS(0.176)QSPVVGR;SLLGDSAPTLHLNKGT(0.663)PS(0.337)QSPVVGR;SLLGDS(0.001)APT(0.008)LHLNKGT(0.975)PS(0.014)QS(0.003)PVVGR ;; 319.77 1.43E-105 2714950000 3441772 2958803 2171526 463498 3827420 2682923 3316072 3610814 2448272 3193986 TRUE FALSE FALSE 3200521.556 2724336.675 3012399.023 1079046.768 3347349.294 2351931.238 2486355.712 2788710.476 2660490.188 2394191.116 1.336786163 1.137894405 1.258211595 0.450693665 1.39811282 0.982348996 1.038495087 1.164781899 1.111227157 1 21.19110689 SLLGLDSGELQSGPESSS(ph)SPGVHVR ddPTM_HeLa_A485_30min_R1 1 SLLGLDSGELQSGPESSSSPGVHVR 25 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 SLLGLDSGELQSGPES(0.008)S(0.04)S(0.588)S(0.363)PGVHVR 207.99 8.72E-29 462670000 126470 222360 225490 106020 241000 168650 228110 242720 178860 211580 TRUE FALSE FALSE 154602.8152 248363.0677 308908.1344 111811.6041 217005.1938 177480.2532 179372.435 183192.5394 214755.5614 158836.9998 0.97334258 1.563634846 1.944812196 0.703939285 1.366213124 1.117373492 1.129286219 1.153336689 1.352049973 1 17.27718749 -5.2626876 24.99998466 1.134700259 1.500900346 0.273543764 0.280093887 152.7117295 3058607.152 0.076764052 0.121324568 5.46E-06 5.2626876 0.366200087 SLLGLDSGELQSGPESSS(ph)SPGVHVR ddPTM_HeLa_A486_30min_R1 1 SLLGLDSGELQSGPESSSSPGVHVR 25 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 SLLGLDSGELQSGPES(0.043)S(0.03)S(0.551)S(0.376)PGVHVR 145.26 3.51E-09 283450000 134100 176150 131160 18299 182670 103420 135670 123220 130920 118100 TRUE FALSE FALSE 124700.2825 162191.2325 181948.6646 42600.99678 159757.8253 90661.0919 101723.931 95165.49587 142268.251 88526.9913 1.408613132 1.832110525 2.055290278 0.48122043 1.804622781 1.024106779 1.149072498 1.074988481 1.607060727 1 16.43382977 -5.229851858 24.99983734 1.186499993 1.772015223 0.360011866 0.367052275 729.0853816 577031.375 0.094272695 0.163267978 5.89E-06 5.229851858 0.58551523 SLLGLDSGELQSGPESSSS(ph)PGVHVR ddPTM_HeLa_A485_30min_R1 1 SLLGLDSGELQSGPESSSSPGVHVR 25 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 SLLGLDSGELQSGPES(0.006)S(0.046)S(0.352)S(0.596)PGVHVR 131.83 3.30E-06 423400000 146070 220210 222300 117890 255830 174030 212930 226360 163350 198790 TRUE FALSE FALSE 178562.7676 245961.6439 304538.0207 124330.0322 230358.6669 183141.9417 167435.766 170844.8551 196132.8467 149235.3115 1.196518209 1.648146417 2.040656583 0.833114033 1.543593568 1.227202462 1.121958097 1.144801813 1.314252269 1 17.18722942 -5.265574598 24.99992911 1.191346789 1.630410996 0.396289975 0.258703274 365.120398 2207378.913 0.071374134 0.110256484 5.43E-06 5.265574598 0.439064207 SLLGLDSGELQSGPESSSS(ph)PGVHVR ddPTM_HeLa_A486_30min_R1 1 SLLGLDSGELQSGPESSSSPGVHVR 25 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 SLLGLDSGELQSGPESS(0.001)S(0.32)S(0.679)PGVHVR 184.06 1.95E-20 236570000 170920 186030 184000 12576 215470 133110 163890 169900 167670 123770 TRUE FALSE FALSE 158939.3906 171288.3053 255249.7277 29277.56356 188443.7434 116688.2416 122882.9885 131217.4789 182203.7706 92777.18639 1.7131301 1.846233023 2.751212207 0.315568565 2.031143116 1.257725591 1.324495744 1.414329147 1.963885495 1 16.50148247 -5.240222938 24.9999226 1.372880538 2.07779574 0.315439814 0.519322428 1053.160269 1240966.394 0.134900019 0.233362673 5.75E-06 5.240222938 0.704915202 SLLHGDFHAFSAGPGLFSYIR ddPTM_HeLa_A485_30min_R1 1 SLLHGDFHAFSAGPGLFSYIR 21 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 254.32 1.16E-52 135310000 58875 76635 45019 33986 43132 66443 90928 86747 52043 103440 FALSE FALSE TRUE 71971.54063 85596.79661 61673.4015 35842.56912 38837.62663 69921.85274 71500.48999 65472.16224 62487.55273 77654.31167 0.926819633 1.102280025 0.794204471 0.461565731 0.500134839 0.900424603 0.920753638 0.843123335 0.804688772 1 16.24477841 -8.411969261 0.708379307 0.998537656 0.787849879 0.092651271 0.183731698 4.120564583 3.769771675 0.228828548 0.079581561 3.87E-09 8.411969261 -0.210687777 SLLHGDFHAFSAGPGLFSYIR ddPTM_HeLa_A486_30min_R1 1 SLLHGDFHAFSAGPGLFSYIR 21 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;F5GZI0 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 165.3 3.59E-17 118450000 23072 25984 38703 4389 56964 25824 27672 27552 49634 26798 FALSE FALSE TRUE 21454.77194 23924.93321 53689.8381 10217.81381 49819.04395 22638.09744 20748.17292 21279.01106 53936.31508 20087.60637 1.068060153 1.191029571 2.672784258 0.508662586 2.480088619 1.126968391 1.032884283 1.059310435 2.68505436 1 14.29401804 SLLIDFFR ddPTM_HeLa_A485_30min_R1 1 SLLIDFFR 8 0 Q5VXN0;Q9H7B2 Q5VXN0 RPF2 Ribosome production factor 2 homolog 0 0 105.57 0.015451 7506800 8189.2 10873 12394 10589 15789 9735 12366 11144 11348 15555 FALSE FALSE TRUE 10010.85929 12144.50277 16979.05636 11167.45026 14216.99172 10244.70955 9723.903079 8410.916527 13625.43951 11677.42477 0.857283133 1.039998374 1.454006915 0.95632817 1.217476627 0.877308974 0.832709546 0.720271523 1.166818865 1 13.51143453 -6.27657355 24.10005435 0.896519212 1.112534061 0.19582795 0.184852791 752.9203836 1198966.01 0.064869542 0.057463993 5.29E-07 6.27657355 0.216014849 SLLKNS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SLLKNSPR 8 1 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 S(0.034)LLKNS(0.966)PR 51.762 0.024942 331210000 722200 736260 578750 781800 1133100 913270 1235800 1308900 756940 1167200 TRUE FALSE FALSE 882850.8984 822359.2024 792853.7088 824507.7544 1020284.585 961087.405 971761.2344 987890.2227 908850.9149 876238.5207 1.007546322 0.938510671 0.90483777 0.940962689 1.164391386 1.096833091 1.109014511 1.127421586 1.037218626 1 19.74096411 -5.745850717 24.99913488 1.096895335 0.944208571 0.662210414 0.049182524 132.4391171 212388.359 0.014118874 0.018163045 1.80E-06 5.745850717 -0.152686764 SLLLEPPRGT(ph)PDR ddPTM_HeLa_A485_30min_R1 2 SLLLEPPRGTPDR 13 1 Q53GT1-3;Q53GT1 Q53GT1-3 KLHL22 Kelch-like protein 22 1 0 S(0.003)LLLEPPRGT(0.997)PDR;S(0.004)LLLEPPRGT(0.996)PDR ; 60.474 0.034578 556090000 284000 357360 306980 277770 443060 272640 312440 279880 266190 332850 TRUE FALSE FALSE 347174.8202 399150.1434 420544.6765 292943.8717 398947.3907 286915.0088 245684.6416 211238.9912 319611.8914 249876.6207 1.389384967 1.597388913 1.6830093 1.172354064 1.596577502 1.148226705 0.983223804 0.845373171 1.279078813 1 17.9308564 -6.416044623 3.970394858 1.01811597 1.48635878 0.639999502 0.165251632 0.150528562 4.164055227 0.060638589 0.052206309 3.84E-07 6.416044623 0.468242811 SLLLEPPRGT(ph)PDR ddPTM_HeLa_A486_30min_R1 4 SLLLEPPRGTPDR 13 1 Q53GT1-3;Q53GT1 Q53GT1-3 KLHL22 Kelch-like protein 22 1 0 S(0.038)LLLEPPRGT(0.962)PDR;S(0.003)LLLEPPRGT(0.997)PDR;S(0.001)LLLEPPRGT(0.999)PDR;SLLLEPPRGT(1)PDR ;;; 66.965 0.016062 1200720000 784640 783930 636100 188110 798020 653120 691290 706610 604660 655030 TRUE FALSE FALSE 729640.7879 721808.5318 882414.9553 437929.5866 697924.8904 572544.6948 518321.9303 545730.3282 657072.4156 491006.2245 1.48601128 1.47005984 1.797156352 0.891902311 1.421417602 1.166064026 1.055632097 1.111452973 1.338216061 1 18.90538179 -5.258238535 24.99963639 1.154525913 1.572974221 0.596961362 0.166734136 198.3634714 1549276.357 0.044472246 0.073108121 5.52E-06 5.258238535 0.418448307 SLLLSVNAR ddPTM_HeLa_A485_30min_R1 2 SLLLSVNAR 9 0 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 188.98 2.34E-08 119021000 100664 153837 151085 113473 185515 125758 177590 186291 119954 171581 FALSE FALSE TRUE 123056.3595 171826.8989 206977.6287 119671.7427 167044.4752 132342.4944 139646.4457 140602.8402 144027.6675 128809.0144 0.955339656 1.333966413 1.606856707 0.929063414 1.296838393 1.027431931 1.084135659 1.091560562 1.118148976 1 16.97487404 -5.29012202 24.99984047 1.089229323 1.302245706 0.255185857 0.171913101 980.2882701 854418.8408 0.048070967 0.071314014 5.13E-06 5.29012202 0.213016382 SLLLSVNAR ddPTM_HeLa_A486_30min_R1 2 SLLLSVNAR 9 0 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 146.79 0.00040283 106053000 188211 173418 126692 58335 191214 167976 192222 185120 142842 202341 FALSE FALSE TRUE 175018.3808 159675.7261 175750.5353 135806.8281 167230.1571 147252.829 144126.0225 142972.2171 155223.6596 151673.4966 1.153915383 1.052759577 1.158742557 0.895389314 1.102566769 0.970854054 0.950238675 0.94263151 1.023406614 1 17.21060949 -5.24896289 24.99678875 0.984231324 1.114901216 0.54001939 0.058352629 609.9352696 1222010.662 0.01532283 0.026308198 5.64E-06 5.24896289 0.130669892 SLLNHT(ph)PPSGRPR ddPTM_HeLa_A485_30min_R1 1 SLLNHTPPSGRPR 13 1 Q9UKI8;Q9UKI8-2;B3KRP1;F8W7X8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 S(0.005)LLNHT(0.833)PPS(0.162)GRPR 61.127 0.032716 1342600000 435700 701110 633760 391740 692620 607100 712710 776340 580230 514370 TRUE FALSE FALSE 532619.9619 783098.7157 868214.197 413139.7643 623660.3209 638886.8172 560433.6862 585941.3977 696676.8388 386147.0253 1.379319086 2.027980703 2.248403173 1.06990275 1.615085136 1.654516999 1.451347931 1.517404925 1.804175076 1 18.55879073 -11.7856903 0.191656902 5.53E-11 1.785888677 0.259168433 0.317617834 74.4773123 1.57184625 32.79955685 0.956578922 1.64E-12 11.7856903 1.785888677 SLLNHT(ph)PPSGRPR ddPTM_HeLa_A486_30min_R1 3 SLLNHTPPSGRPR 13 1 Q9UKI8;Q9UKI8-2;B3KRP1;F8W7X8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 S(0.002)LLNHT(0.989)PPS(0.009)GRPR;S(0.005)LLNHT(0.958)PPS(0.037)GRPR;SLLNHT(0.998)PPS(0.001)GRPR ;; 92.8 0.0016538 1984370000 1210920 1293150 1066910 172939 1371720 1042870 1248590 1241320 1079220 1058530 TRUE FALSE FALSE 1126040.761 1190676.084 1480046.125 402610.7319 1199666.087 914211.3025 936179.5758 958698.5338 1172767.659 793467.1981 1.419139649 1.500599 1.865289615 0.507406901 1.511929024 1.152172774 1.179859203 1.208239655 1.478029163 1 19.59781106 -5.201806571 24.99999314 1.173539794 1.585568097 0.342398365 0.282123216 302.891398 126981.0138 0.073291528 0.126944631 6.28E-06 5.201806571 0.412028302 SLLNHTPPS(ph)GRPR ddPTM_HeLa_A485_30min_R1 1 SLLNHTPPSGRPR 13 1 Q9UKI8;Q9UKI8-2;B3KRP1;F8W7X8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 S(0.018)LLNHT(0.42)PPS(0.563)GRPR 46.892 0.030761 478550000 159980 187980 148440 233750 235130 181470 298870 286200 163350 325630 TRUE FALSE FALSE 195566.9991 209962.6258 203354.1331 246519.1706 211719.6316 190971.4886 235013.983 216009.0013 196132.8467 244456.4338 0.800007576 0.858895888 0.831862471 1.008438055 0.866083287 0.781208683 0.961373687 0.883629847 0.802322294 1 17.89921785 -11.34036998 2.263650306 1.767688137 0.869792862 0.255829158 0.068294687 8844943.675 646744.4332 35083082.4 0.017183982 4.57E-12 11.34036998 -0.897895275 SLLSHEFQDET(ph)DTEEETLYSSK ddPTM_HeLa_A485_30min_R1 1 SLLSHEFQDETDTEEETLYSSK 22 0 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 1 0 S(0.024)LLS(0.074)HEFQDET(0.592)DT(0.188)EEET(0.122)LY(0.001)SSK 65.165 0.015091 63638000 72902 47181 55517 72911 72895 62937 91378 78528 57469 133920 TRUE FALSE FALSE 89118.79839 52698.40753 76055.04856 76893.94331 65637.31785 66232.284 71854.34381 59268.88487 69002.50116 100536.2086 0.886434844 0.524173412 0.756494099 0.764838304 0.65287242 0.658790349 0.714711096 0.58952775 0.686344772 1 16.61735566 -10.56012283 12.53693882 1.000000956 0.687175546 0.486607727 0.094544668 2.36E-06 8.29E-08 0.085530835 0.020744211 2.75E-11 10.56012283 -0.31282541 SLLSHEFQDET(ph)DTEEETLYSSKH ddPTM_HeLa_A485_30min_R1 2 SLLSHEFQDETDTEEETLYSSKH 23 1 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 1 0 SLLSHEFQDET(1)DTEEETLYSSKH;SLLSHEFQDET(0.997)DT(0.003)EEETLYSSKH ; 228.47 1.82E-38 637300000 190599 275260 197697 99907 267230 216406 325350 341760 200691 281680 TRUE FALSE FALSE 232997.09 307449.2626 270833.3472 105364.6664 240623.6429 227736.6835 255836.3146 257942.8241 240967.8429 211462.3599 1.101837178 1.453919566 1.280763854 0.498266767 1.137902949 1.076960853 1.209843278 1.219804906 1.139530661 1 17.69004136 -5.043019308 24.99998913 1.048864285 1.300245834 0.211183413 0.20990464 695.8592313 404386.7705 0.058820346 0.101889731 9.06E-06 5.043019308 0.25138155 SLLSHEFQDET(ph)DTEEETLYSSKH ddPTM_HeLa_A486_30min_R1 2 SLLSHEFQDETDTEEETLYSSKH 23 1 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 1 0 SLLSHEFQDET(0.964)DT(0.036)EEETLYSSKH;SLLSHEFQDET(0.997)DT(0.003)EEETLYSSKH ; 190.21 3.62E-21 546970000 253290 234710 204967 8586.1 286690 195371 219793 198123 247290 125963 TRUE FALSE FALSE 235535.679 216110.7248 284335.7116 19988.87472 250730.6669 171268.1124 164798.4667 153014.7179 268725.2963 94421.04492 2.494525232 2.288798276 3.011359511 0.211699359 2.655453211 1.813876478 1.74535737 1.620557345 2.846031799 1 16.52682083 SLLSNVS(ph)IEDEEEELVAIVR ddPTM_HeLa_A485_30min_R1 2 SLLSNVSIEDEEEELVAIVR 20 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR ; 144.01 2.30E-09 58668000 8344.8 10092.9 10454.7 8858.4 13952.7 9896 13827.3 15311.9 12672.7 15139.2 TRUE FALSE FALSE 10201.07197 11273.17686 14322.32859 9342.311961 12563.5202 10414.13926 10872.9844 11556.63252 15215.99465 11365.27606 0.897564821 0.99189644 1.26018308 0.822004843 1.105430272 0.916312037 0.956684584 1.016836939 1.338814348 1 13.47234511 -7.559379804 24.56580524 1.172213917 0.997127693 0.206003338 0.136790307 215.0748391 144744.6281 0.087327461 0.033006901 2.76E-08 7.559379804 -0.175086224 SLLSNVS(ph)IEDEEEELVAIVR ddPTM_HeLa_A486_30min_R1 4 SLLSNVSIEDEEEELVAIVR 20 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 SLLSNVS(1)IEDEEEELVAIVR;SLLSNVS(1)IEDEEEELVAIVR;S(0.001)LLS(0.01)NVS(0.99)IEDEEEELVAIVR;SLLS(0.001)NVS(0.999)IEDEEEELVAIVR ;;; 322.71 2.66E-102 186813000 57716.2 60252 57701.2 34465.6 65902.1 71481.7 85049.4 97555.1 61027.3 80044 TRUE FALSE FALSE 53670.59243 55477.41209 80044.64993 80237.65859 57636.04411 62663.01463 63769.14056 75343.93334 66317.1955 60000.4614 0.894502995 0.924616424 1.33406724 1.337284026 0.960593348 1.044375546 1.062810836 1.255722566 1.105278092 1 15.87268597 -4.62389421 9.835370285 1.141348264 0.902164593 0.345181611 0.125783454 0.319390889 27.87370281 0.033899164 0.089907853 2.38E-05 4.62389421 -0.239183671 SLLSS(ph)PTK ddPTM_HeLa_A485_30min_R1 1 SLLSSPTK 8 0 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 SLLS(0.252)S(0.727)PT(0.021)K 80.102 0.0090959 307210000 1148700 875160 510350 1553500 769130 956380 1184000 945380 768900 2780900 TRUE FALSE FALSE 1404224.352 977502.3491 699149.7024 1638363.771 692552.7166 1006454.578 931028.7276 713524.0727 923211.1772 2087672.809 0.672626643 0.468225837 0.33489429 0.784779954 0.331734319 0.482094021 0.445964868 0.341779646 0.442220243 1 20.99346419 -10.06852349 5.223209058 1.000007178 0.473600953 0.5565698 0.139655168 1.13E-05 2.02E-06 0.131411228 0.03187147 8.54E-11 10.06852349 -0.526406226 SLLSS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 SLLSSPTK 8 0 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 SLLS(0.285)S(0.678)PT(0.037)K;SLLS(0.118)S(0.87)PT(0.012)K ; 92.538 0.0035232 603570000 2164100 2217400 1169370 851810 1918090 2564700 2512300 2390800 2624800 3845200 TRUE FALSE FALSE 2012407.765 2041685.148 1622181.381 1983056.728 1677505.267 2248293.39 1883695.968 1846467.031 2852319.777 2882336.892 0.698186174 0.708343689 0.562800756 0.688003104 0.581994864 0.780024499 0.653530811 0.640614578 0.989585841 1 21.45880754 -7.764433206 24.98672909 0.994793155 0.663839756 0.833831604 0.059034248 28.52450042 238047.159 0.048206071 0.01453586 1.72E-08 7.764433206 -0.330953398 SLMLENTECHSIYEES(ph)PER ddPTM_HeLa_A485_30min_R1 1 SLMLENTECHSIYEESPER 19 0 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 SLMLENTECHSIYEES(1)PER 97.346 0.00025112 125910000 23990 30550 24591 28818 33190 28946 22912 22187 25989 29345 TRUE FALSE FALSE 29326.49274 34122.55675 33688.23422 30392.25437 29885.48706 30461.5678 18016.66403 16745.60346 31204.75391 22029.83155 1.331217293 1.548924996 1.529209796 1.379595404 1.356591719 1.382741748 0.817830313 0.760133069 1.416477191 1 14.42717084 -6.688173584 6.864221769 0.97970178 1.43036402 0.581021664 0.175674597 0.149759545 11.39828172 0.067761427 0.05205984 2.05E-07 6.688173584 0.45066224 SLMPYFLLTQAVR ddPTM_HeLa_A485_30min_R1 1 SLMPYFLLTQAVR 13 0 O43242-2;O43242 O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 0 149.49 7.74E-05 11283000 10596 13955 13420 10725 14074 12457 17425 17341 9295.2 15213 FALSE FALSE TRUE 12953.04364 15586.91586 18384.61645 11310.87959 12672.74314 13109.22926 13702.0064 13088.09256 11160.66138 11420.67907 1.134174558 1.364797641 1.609765613 0.990385906 1.109631315 1.147850244 1.199754087 1.145999504 0.977232729 1 13.47936082 -5.28022963 24.99867062 1.096491519 1.369101144 0.513089301 0.128001842 674.1186152 896850.0934 0.03676466 0.054632949 5.25E-06 5.28022963 0.272609625 SLMPYFLLTQAVR ddPTM_HeLa_A486_30min_R1 2 SLMPYFLLTQAVR 13 0 O43242-2;O43242 O43242-2 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 0 ; ; 158.3 4.67E-06 19024000 16702.3 23433.7 21795.3 8917.6 28002 23566.5 26695.3 25623.1 21717.4 25824.9 FALSE FALSE TRUE 15531.55502 21576.72827 30235.02386 20760.62347 24489.72805 20659.10484 20015.85359 19789.27948 23599.88172 19358.17695 0.802325294 1.114605385 1.561873514 1.072447242 1.26508442 1.067203017 1.0339741 1.02226979 1.219116954 1 14.24065547 -6.304601394 21.57797929 1.067745708 1.177662965 0.058922732 0.184904529 293.781359 146867.5825 0.067005365 0.05909012 4.96E-07 6.304601394 0.109917257 SLMS(ph)S(ph)PEDLTK ddPTM_HeLa_A485_30min_R1 5 SLMSSPEDLTK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 SLMS(1)S(1)PEDLTK;S(0.002)LMS(0.998)S(1)PEDLTK;SLMS(1)S(1)PEDLTK;SLMS(1)S(1)PEDLTK;SLMS(1)S(1)PEDLTK ;;;; 263.19 3.15E-27 1185970000 2843250 2564378 1569473 4049400 2415393 2388094 3409900 2763050 1934719 4946290 TRUE FALSE FALSE 3475721.153 2864259.7 2150086.374 4270608.468 2174907.992 2513130.909 2681347.009 2085407.655 2322999.357 3713270.933 0.936026812 0.771357585 0.579027605 1.150093421 0.585712174 0.676797076 0.722098403 0.561609345 0.625593823 1 21.82425915 -4.305957499 4.058301028 0.725860457 0.946251519 0.090636983 0.183377768 0.473229847 15.27509138 0.045163538 0.274084003 4.94E-05 4.305957499 0.220391062 SLMS(ph)S(ph)PEDLTK ddPTM_HeLa_A486_30min_R1 6 SLMSSPEDLTK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 SLMS(1)S(1)PEDLTK;SLMS(1)S(1)PEDLTK;SLMS(1)S(1)PEDLTK;SLMS(1)S(1)PEDLTK;S(0.001)LMS(0.999)S(1)PEDLTK;SLMS(1)S(1)PEDLTK ;;;;; 219.97 1.62E-17 1579529000 3058970 2947380 1223520 1229060 1913770 2857700 3254300 2844020 2149700 4135090 TRUE FALSE FALSE 2844552 2713818.875 1697299.711 2861313.793 1673727.121 2505146.029 2440039.72 2196498.731 2336037.727 3099636.549 0.917705013 0.875528092 0.547580235 0.923112677 0.539975283 0.808206378 0.78720188 0.708631059 0.753648917 1 21.56366763 -9.117218394 10.46388363 1 0.758088374 0.235700052 0.128146292 0 0 0.118396033 0.028715256 7.63E-10 9.117218394 -0.241911626 SLMS(ph)S(ph)PEDLTKDFEELKAEEVDVTK ddPTM_HeLa_A485_30min_R1 2 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(0.082)LMS(0.923)S(0.832)PEDLT(0.162)KDFEELKAEEVDVTK;S(0.05)LMS(0.951)S(0.956)PEDLT(0.043)KDFEELKAEEVDVTK ; 54.683 0.014849 43168000 39269 23583.5 17097.8 105564 49925 45444 110882 91072 27077.3 175700 TRUE FALSE FALSE 48004.25357 26341.38518 23422.98772 111330.694 44954.2917 47823.37757 87191.15488 68736.4492 32511.46574 131901.2235 0.363940927 0.199705389 0.177579761 0.844045954 0.340817852 0.362569628 0.661033708 0.521120634 0.246483428 1 17.00909842 -14 0.187302944 3.378230404 0.313935111 0.429653745 0.200933981 136.6268099 1.330910585 121.8156206 0.584330317 1.00E-14 14 -3.064295294 SLMS(ph)S(ph)PEDLTKDFEELKAEEVDVTK ddPTM_HeLa_A486_30min_R1 1 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(0.187)LMS(0.797)S(0.847)PEDLT(0.168)KDFEELKAEEVDVTK 66.479 0.0058587 29342000 41054 35301 12850 52983 41074 61540 102560 78646 27487 108780 TRUE FALSE FALSE 38176.3266 32503.6202 17825.86413 123347.1016 35922.11592 53947.82049 76898.40323 60740.02263 29869.59529 81540.77996 0.46818692 0.39861797 0.218612873 1.512704461 0.440541726 0.661605402 0.94306681 0.744903626 0.36631481 1 16.31523414 SLMS(ph)SPEDLTKDFEELKAEEVDVTK ddPTM_HeLa_A485_30min_R1 2 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.001)LMS(0.499)S(0.499)PEDLTKDFEELKAEEVDVTK;S(0.014)LMS(0.469)S(0.422)PEDLT(0.095)KDFEELKAEEVDVTK ; 125.62 3.32E-06 168173000 103230 58121 35084 271957 138158 129903 308509 276050 93194 445730 TRUE FALSE FALSE 126193.1574 64917.74536 48063.03157 286813.3223 124402.5044 136704.5202 242593.5319 208348.3047 111897.181 334617.7141 0.377126351 0.194005705 0.143635646 0.857137295 0.371775011 0.4085394 0.724987117 0.622645771 0.33440304 1 18.3521543 -14 0.088794529 2.745091587 6.61E-13 0.431384357 0.203883337 214.4991585 1.324076544 71.37324768 5.169243362 1.00E-14 14 -2.745091587 SLMS(ph)SPEDLTKDFEELKAEEVDVTK ddPTM_HeLa_A486_30min_R1 2 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.018)LMS(0.491)S(0.491)PEDLTKDFEELKAEEVDVTK;S(0.004)LMS(0.375)S(0.291)PEDLT(0.33)KDFEELKAEEVDVTK ; 105.54 0.0002111 90424000 111695 78895 31569.4 128718 87720 145163 251450 217982 67373 291104 TRUE FALSE FALSE 103865.7573 72643.07287 43793.91714 299662.009 76717.33964 127254.265 188534.5504 168352.2571 73212.94589 218209.6636 0.475990639 0.33290493 0.200696506 1.373275611 0.35157627 0.583174287 0.864006421 0.771516047 0.335516515 1 17.73535547 SLMSS(ph)PEDLTK ddPTM_HeLa_A485_30min_R1 2 SLMSSPEDLTK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SLMSS(1)PEDLTK;SLMS(0.078)S(0.922)PEDLTK ; 266.97 7.77E-28 541600000 1340750 1305980 864090 1781080 1180960 1261890 1675680 1432850 1154620 2317600 TRUE FALSE FALSE 1638995.212 1458703 1183752.849 1878375.89 1063379.476 1327960.609 1317657.279 1081441.291 1386341.643 1739864.972 0.942024374 0.838400119 0.680370527 1.079610154 0.611185059 0.763254983 0.757333069 0.621566218 0.796809905 1 20.73054391 -4.402186081 3.668543148 0.776322923 0.940954331 0.089384123 0.142817366 0.540623909 11.79922917 0.034880155 0.183394635 3.96E-05 4.402186081 0.164631408 SLMSS(ph)PEDLTK ddPTM_HeLa_A486_30min_R1 4 SLMSSPEDLTK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SLMS(0.002)S(0.998)PEDLTK;SLMS(0.001)S(0.999)PEDLTK;SLMS(0.019)S(0.981)PEDLTK;SLMSS(1)PEDLTK ;;; 300.27 5.08E-44 595430000 2364530 2098010 882460 764890 1321570 1988570 2202100 2038300 1662220 2964270 TRUE FALSE FALSE 2198788.657 1931756.047 1224172.145 1780702.575 1155806.367 1743240.452 1651111.289 1574223.586 1806302.568 2221997.498 0.989554966 0.869378138 0.550933179 0.801397201 0.520165468 0.78453754 0.743075224 0.708472259 0.812918363 1 21.08342576 -8.103643031 3.838276526 0.999936276 0.739500052 0.255361556 0.130381772 0.662256717 20.59242439 0.12694521 0.033402337 7.88E-09 8.103643031 -0.260436224 SLMSS(ph)PEDLTKDFEELKAEEVDVTK ddPTM_HeLa_A485_30min_R1 1 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.001)LMS(0.03)S(0.963)PEDLT(0.006)KDFEELKAEEVDVTK 129.73 2.46E-06 108670000 38849 19436 14057 108280 55389 46269 104290 102180 37281 171870 TRUE FALSE FALSE 47490.82602 21708.87113 19257.26926 114195.0622 49874.27668 48691.57329 82007.58953 77120.19479 44762.95474 129025.972 0.368071833 0.168251948 0.149251108 0.885054849 0.386544475 0.377378078 0.635589783 0.597710628 0.346929801 1 16.97730197 -14 0.090011704 2.71161638 1.07E-18 0.434006648 0.202890621 212.7847711 1.328308891 70.87087068 4.957826031 1.00E-14 14 -2.71161638 SLMSS(ph)PEDLTKDFEELKAEEVDVTK ddPTM_HeLa_A486_30min_R1 2 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SLMS(0.153)S(0.846)PEDLTKDFEELKAEEVDVTK;SLMS(0.123)S(0.877)PEDLTKDFEELKAEEVDVTK ; 180.71 1.50E-20 259910000 88920 61116 23006.3 100448 61063 119592 202959 183035 54032 213905 TRUE FALSE FALSE 82687.16718 56272.94558 31914.95549 233848.0204 53403.90915 104837.955 152176.5115 141361.9261 58715.53726 160341.7957 0.515693159 0.350956189 0.199043271 1.458434585 0.333062935 0.653840469 0.949075759 0.881628683 0.366189845 1 17.29079101 SLNFQEDDDT(ph)SRETFAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_A485_30min_R1 1 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 2 0 SLNFQEDDDT(0.783)S(0.167)RET(0.059)FAS(0.961)DT(0.03)NEALASLDESQEGHAEAK 123.19 7.00E-05 177100000 30555 39668 36925 42540 48777 41175 53306 64148 43849 63422 TRUE FALSE FALSE 37351.85434 44306.82753 50585.09408 44863.85248 43920.59061 43330.85933 41916.73763 48415.60242 52649.09209 47612.0626 0.784504016 0.930579881 1.062442821 0.942279121 0.922467716 0.910081542 0.880380629 1.016876812 1.105793138 1 15.53903951 -7.43870756 5.144705741 1.055851692 0.926089676 0.402172906 0.06855062 0.228857669 10.14989758 0.041573978 0.018854458 3.64E-08 7.43870756 -0.129762016 SLNFQEDDDT(ph)SRETFASDTNEALASLDESQEGHAEAK ddPTM_HeLa_A485_30min_R1 2 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 SLNFQEDDDT(0.623)S(0.377)RETFASDTNEALASLDESQEGHAEAK;SLNFQEDDDT(0.5)S(0.5)RET(0.001)FASDTNEALASLDESQEGHAEAK ; 319.03 4.03E-111 1181770000 216643 205522 189014 220421 406750 302020 402810 420440 316790 511050 TRUE FALSE FALSE 264834.4879 229556.0101 258938.1441 232462.0411 366252.5418 317833.3002 316746.3528 317326.4308 380366.8472 383654.6402 0.690293979 0.598340242 0.674925094 0.605914843 0.954641241 0.82843596 0.82560282 0.827114799 0.991430332 1 18.54944868 -5.989252809 0.393533996 0.988371264 0.557587397 0.680494705 0.08167248 1.057186112 0.311140841 0.086797897 0.186180615 1.03E-06 5.989252809 -0.430783867 SLNFQEDDDTS(ph)R ddPTM_HeLa_A486_30min_R1 1 SLNFQEDDDTSR 12 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 SLNFQEDDDT(0.184)S(0.816)R 105.14 0.00057505 138510000 276680 262340 202440 67099 252900 231400 198840 193110 249010 353150 TRUE FALSE FALSE 257286.1608 241551.223 280830.1895 156209.863 221178.9238 202852.2207 149088.1289 149143.0686 270594.3873 264718.9414 0.971921992 0.912481826 1.060861713 0.590097037 0.835523603 0.766292807 0.563194036 0.563401575 1.022195034 1 18.0141019 -5.251799853 24.93249683 0.739605177 0.974827846 0.275943938 0.159183441 796.7339192 2060736.104 0.042367723 0.072216849 5.60E-06 5.251799853 0.235222668 SLNFQEDDDTS(ph)RETFAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_A486_30min_R1 1 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 2 0 S(0.001)LNFQEDDDT(0.468)S(0.528)RET(0.003)FAS(0.988)DT(0.011)NEALASLDESQEGHAEAK 132.81 3.55E-06 44951000 26048 29006 19246 6222.2 32955 32176 35543 42092 28970 37589 TRUE FALSE FALSE 24222.16971 26707.45892 26698.56663 14485.59605 28821.47661 28206.45226 26649.76546 32508.57046 31481.14293 28176.46974 0.859659494 0.947863915 0.947548322 0.514102589 1.022891685 1.001064098 0.945816339 1.153748882 1.117284856 1 14.78220325 -5.960661727 24.9999963 1.04318197 0.827495473 0.428323769 0.126089578 164.9189683 104807.5188 0.040481847 0.045902048 1.09E-06 5.960661727 -0.215686497 SLNFQEDDDTSRET(ph)FAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_A486_30min_R1 1 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 2 0 S(0.32)LNFQEDDDT(0.165)S(0.166)RET(0.495)FAS(0.688)DT(0.165)NEALASLDESQEGHAEAK 69.885 0.026457 45051000 31153 28950 17934 7539.2 34909 31608 36242 37513 26812 36449 TRUE FALSE FALSE 28969.33557 26655.89657 24878.52509 17551.63861 30530.38771 27708.52633 27173.86827 28972.1088 29136.08575 27321.93316 1.060295968 0.97562264 0.910569722 0.642401052 1.117431462 1.014149554 0.994580732 1.06039747 1.06639913 1 14.73777194 SLNFQEDDDTSRETFAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_A485_30min_R1 2 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 SLNFQEDDDT(0.001)S(0.001)RET(0.023)FAS(0.975)DTNEALASLDESQEGHAEAK;SLNFQEDDDTSRET(0.002)FAS(0.994)DT(0.004)NEALASLDESQEGHAEAK ; 346.93 1.10E-149 290501000 54146 65973 62361 66222 106390 88709 133512 146375 78457 110360 TRUE FALSE FALSE 66190.5909 73687.96846 85430.92896 69839.54018 95797.43804 93353.66607 104986.0705 110476.3017 94202.60025 82849.28303 0.798927745 0.889421921 1.031160752 0.842970966 1.156285662 1.126789064 1.267193471 1.333461168 1.137035793 1 16.33820159 -5.825169223 5.633300076 1.192617514 0.900758573 0.64518249 0.100760355 0.124241566 7.548842103 0.031808383 0.036637322 1.50E-06 5.825169223 -0.291858941 SLPAPVAQRPDS(ph)PGGGLQAPGQK ddPTM_HeLa_A485_30min_R1 2 SLPAPVAQRPDSPGGGLQAPGQK 23 1 Q5JVS0-2;Q5JVS0 Q5JVS0-2 HABP4 Intracellular hyaluronan-binding protein 4 1 0 SLPAPVAQRPDS(1)PGGGLQAPGQK;SLPAPVAQRPDS(1)PGGGLQAPGQK ; 221.11 2.44E-38 1967320000 917220 872250 792140 1215560 1306490 869890 1229850 1107570 984860 1596310 TRUE FALSE FALSE 1121252.425 974252.0499 1085185.55 1281962.965 1176411.268 915436.0953 967082.5005 835936.7209 1182512.368 1198379.295 0.935640685 0.812974702 0.905544308 1.069747258 0.981668553 0.76389512 0.806991997 0.697556045 0.986759679 1 20.19265317 -6.254046344 24.97022231 0.829384785 0.939166267 0.13796023 0.105816153 963.462475 3254127.93 0.03578986 0.035113717 5.57E-07 6.254046344 0.109781482 SLPAPVAQRPDS(ph)PGGGLQAPGQK ddPTM_HeLa_A486_30min_R1 2 SLPAPVAQRPDSPGGGLQAPGQK 23 1 Q5JVS0-2;Q5JVS0 Q5JVS0-2 HABP4 Intracellular hyaluronan-binding protein 4 1 0 SLPAPVAQRPDS(1)PGGGLQAPGQK;SLPAPVAQRPDS(1)PGGGLQAPGQK ; 182.35 4.50E-21 1726790000 1143450 1262130 756140 474170 1229590 1309420 1396670 1322420 1037310 1214420 TRUE FALSE FALSE 1063300.06 1162114.222 1048937.658 1103891.723 1075363.357 1147877.074 1047208.394 1021333.834 1127224.866 910321.3275 1.168049158 1.27659782 1.15227187 1.212639636 1.181300849 1.260958124 1.15037225 1.121948705 1.238271402 1 19.79601636 -13.55693385 0.265876412 5.81E-08 1.21059467 0.592459128 0.048520137 105.2276456 1.284099462 57.25191408 0.059867899 2.77E-14 13.55693385 1.210594611 SLPAT(ph)PQGK ddPTM_HeLa_A486_30min_R1 2 SLPATPQGK 9 0 Q13111;Q13111-2;Q13111-3;K7EPA1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(0.002)LPAT(0.998)PQGK;S(0.003)LPAT(0.997)PQGK ; 88.803 0.018208 642210000 1567990 1252620 816020 558330 1270020 1348650 1572520 1384480 1015620 1820610 TRUE FALSE FALSE 1458081.998 1153357.829 1132004.798 1299820.456 1110722.249 1182267.275 1179058.864 1069264.127 1103654.759 1364717.406 1.068413132 0.845125756 0.82947927 0.952446602 0.813884431 0.866309223 0.863958251 0.783505891 0.808705711 1 20.38017081 -4.259596731 24.72258711 0.856244655 1.068413216 0.483930319 0.063455885 112.7415813 1512497.994 0.015050535 0.094485962 5.50E-05 4.259596731 0.21216856 SLPELDRDKS(ph)DSDTEGLLFSR ddPTM_HeLa_A485_30min_R1 2 SLPELDRDKSDSDTEGLLFSR 21 2 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 SLPELDRDKS(0.5)DS(0.5)DTEGLLFSR;SLPELDRDKS(0.5)DS(0.5)DTEGLLFSR ; 196.68 3.06E-21 128245000 93020 74415 81157 168796 165485 133177 220235 239460 116768 282860 TRUE FALSE FALSE 113711.9781 83117.18693 111180.3515 178016.8981 149008.7323 140149.9418 173179.9931 180732.0595 140202.2665 212348.2077 0.535497706 0.391419301 0.523575653 0.838325409 0.701718814 0.660000587 0.815547233 0.851111773 0.660246998 1 17.69607241 -4.128229277 0.217604895 0.955090249 4.99E-14 0.628676404 0.105871635 9.132804088 0.371592751 0.205538833 2.4029669 7.44E-05 4.128229277 -0.955090249 SLPELDRDKS(ph)DSDTEGLLFSR ddPTM_HeLa_A486_30min_R1 1 SLPELDRDKSDSDTEGLLFSR 21 2 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 SLPELDRDKS(0.96)DS(0.03)DT(0.01)EGLLFSR 140.41 7.64E-08 240790000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SLPELDRDKSDS(ph)DTEGLLFSR ddPTM_HeLa_A485_30min_R1 4 SLPELDRDKSDSDTEGLLFSR 21 2 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 SLPELDRDKS(0.122)DS(0.805)DT(0.073)EGLLFSR;SLPELDRDKS(0.235)DS(0.763)DT(0.001)EGLLFS(0.001)R;SLPELDRDKS(0.001)DS(0.807)DT(0.192)EGLLFSR;SLPELDRDKS(0.006)DS(0.993)DT(0.001)EGLLFSR ;;; 336.6 8.38E-115 2143860000 776250 667530 680875 1463440 1537250 1135400 2040980 2233290 949440 2425670 TRUE FALSE FALSE 948924.1345 745591.8268 932758.9961 1543384.022 1384195.992 1194847.788 1604907.95 1685572.126 1139983.899 1820995.11 0.521101967 0.409441971 0.512224877 0.847549789 0.760131636 0.656151014 0.881335672 0.925632428 0.626022493 1 20.79629562 -5.203907684 5.069998354 0.80487027 0.466886263 0.6528167 0.111223346 0.128556886 7.059164441 0.029894975 0.052345414 6.25E-06 5.203907684 -0.337984008 SLPELDRDKSDS(ph)DTEGLLFSR ddPTM_HeLa_A486_30min_R1 5 SLPELDRDKSDSDTEGLLFSR 21 2 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6 Q9H4G0-3 EPB41L1 Band 4.1-like protein 1 1 0 SLPELDRDKS(0.001)DS(0.996)DT(0.004)EGLLFSR;SLPELDRDKS(0.041)DS(0.959)DT(0.001)EGLLFSR;SLPELDRDKS(0.012)DS(0.983)DT(0.005)EGLLFSR;SLPELDRDKSDS(0.995)DT(0.005)EGLLFSR;SLPELDRDKSDS(0.996)DT(0.003)EGLLFSR ;;;; 313.66 2.57E-102 1962925000 882388 977179 751435 867834 1572945 1359939 1980510 1900300 951991 1737480 TRUE FALSE FALSE 820537.1579 899743.7772 1042410.756 2020361.41 1375651.571 1192163.553 1484965.45 1467643.173 1034510.346 1302403.699 0.630017527 0.690833248 0.800374536 1.551255891 1.056240528 0.915356394 1.140172937 1.1268727 0.794308514 1 20.31274527 -5.015812239 24.51991504 1.090111316 0.681719862 0.471612897 0.186164962 454.2225706 704362.8417 0.050636205 0.09130463 9.64E-06 5.015812239 -0.408391454 SLPKVPAKLS(ph)PMK ddPTM_HeLa_A485_30min_R1 2 SLPKVPAKLSPMK 13 2 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SLPKVPAKLS(1)PMK;SLPKVPAKLS(1)PMK ; 111.06 0.00013408 2300600000 2169790 2652920 957460 1632860 2426000 3793700 6461500 8352500 1717110 2688500 TRUE FALSE FALSE 2652452.3 2963155.917 1311664.297 1722059.007 2184458.922 3992332.266 5080947.739 6304036.279 2061718.227 2018306.428 1.314197023 1.468139761 0.649883625 0.8532198 1.082322729 1.978060521 2.517431282 3.123428728 1.021509023 1 20.9447138 -6.28512953 4.699434361 2.108859023 1.054915113 0.292242658 0.636779139 0.214699487 12.64400444 0.223192858 0.203477062 5.19E-07 6.28512953 -1.05394391 SLPKVPAKLS(ph)PMK ddPTM_HeLa_A486_30min_R1 2 SLPKVPAKLSPMK 13 2 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SLPKVPAKLS(1)PMK;SLPKVPAKLS(1)PMK ; 106.16 0.00018313 1789380000 3626500 1595680 591770 1368720 1740830 1721110 3461600 3291200 1111230 5649500 TRUE FALSE FALSE 3372301.077 1469232.505 820919.1922 3186449.331 1522478.869 1508776.947 2595471.067 2541865.606 1207552.311 4234828.428 0.796325314 0.346940267 0.193849457 0.752438826 0.359513708 0.356278176 0.612886947 0.60022871 0.285147871 1 22.01387209 -10.74735546 2.993587485 1.092095487 0.474498939 0.395830531 0.193356908 645840107.8 596242883.4 441947882 0.046469274 1.79E-11 10.74735546 -0.617596548 SLPS(ph)FSEIK ddPTM_HeLa_A485_30min_R1 3 SLPSFSEIK 9 0 P35367 P35367 HRH1 Histamine H1 receptor 1 0 SLPS(0.862)FS(0.138)EIK;SLPS(0.806)FS(0.194)EIK;SLPS(0.945)FS(0.055)EIK ;; 100.93 0.0017787 214445000 463374 417753 291857 484533 301644 409300 522621 582337 342175 949730 TRUE FALSE FALSE 566449.9477 466605.5794 399827.0495 511001.8109 271611.2642 430730.3151 410958.7539 439517.9377 410846.3839 712979.7895 0.794482475 0.654444328 0.560783146 0.716712898 0.380952263 0.604126963 0.576396077 0.616452169 0.576238471 1 19.44350166 -10.61292731 6.549575956 1.001153529 0.60445983 0.567379268 0.102371401 0.001721216 0.000101722 0.098941269 0.023934264 2.44E-11 10.61292731 -0.396693699 SLPS(ph)FSEIK ddPTM_HeLa_A486_30min_R1 2 SLPSFSEIK 9 0 P35367 P35367 HRH1 Histamine H1 receptor 1 0 SLPS(0.973)FS(0.027)EIK;SLPS(0.842)FS(0.158)EIK ; 84.658 0.0050768 81941000 357780 291560 214400 202300 313620 371770 344970 353190 278580 457320 TRUE FALSE FALSE 332701.4696 268455.7238 297421.4218 470964.6237 274282.8552 325904.7973 258654.8573 272776.3471 302727.5387 342804.0953 0.970529448 0.783117026 0.867613386 1.373859385 0.800115456 0.950702753 0.754526742 0.795720794 0.883091955 1 18.38702482 SLPSSSQLKGS(ph)PQAISR ddPTM_HeLa_A485_30min_R1 4 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 SLPSSSQLKGS(1)PQAISR;SLPSSSQLKGS(1)PQAISR;SLPSSSQLKGS(1)PQAISR;SLPSSSQLKGS(1)PQAISR ;;; 239.73 1.21E-42 3858720000 1582830 1999350 1644570 1691800 2738630 1790830 2603070 3616420 2082950 2943300 TRUE FALSE FALSE 1934925.073 2233156.59 2252964.879 1784218.75 2465962.381 1884595.09 2046902.829 2729487.325 2500978.959 2209589.477 0.875694373 1.010665833 1.019630525 0.807488798 1.116027392 0.852916394 0.926372455 1.235291602 1.131874941 1 21.07534692 -7.246460466 24.72795324 1.137687455 0.947427539 0.396833751 0.100130234 605.5907309 999742.5943 0.045116732 0.025913609 5.67E-08 7.246460466 -0.190259916 SLPSSSQLKGS(ph)PQAISR ddPTM_HeLa_A486_30min_R1 3 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 SLPSSSQLKGS(1)PQAISR;SLPSSSQLKGS(0.999)PQAISR;SLPSS(0.001)S(0.001)QLKGS(0.998)PQAISR ;; 174.19 9.96E-13 2222580000 889510 861140 512793 249127 746290 829900 951760 857090 609439 946390 TRUE FALSE FALSE 827159.9424 792900.1302 711360.1827 579980.2462 652683.3493 727515.3758 713619.5813 661949.3171 662265.6632 709407.784 1.165986561 1.117693022 1.002752153 0.817555515 0.920039735 1.025524941 1.005937061 0.933101288 0.933547218 1 19.43625563 -4.789118258 3.298154632 0.947478799 1.152189278 0.652927425 0.055908998 0.147401128 3.266031521 0.016174881 0.043707681 1.63E-05 4.789118258 0.204710479 SLPTPAVLLS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 SLPTPAVLLSPTK 13 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPTPAVLLS(0.998)PT(0.002)K;SLPTPAVLLS(0.987)PT(0.013)K ; 167.55 5.95E-12 264570000 332050 277130 186333 377910 287300 249560 343070 294760 222318 431350 TRUE FALSE FALSE 405913.3769 309537.9428 255265.3307 398554.2664 258695.4032 262626.5757 269770.2919 222469.6478 266935.1834 323822.3834 1.253506236 0.955888038 0.788288098 1.230780473 0.798880548 0.811020452 0.833081052 0.687011335 0.824325918 1 18.30484319 -5.805961429 24.97300719 0.809703255 1.030683447 0.375872677 0.143591127 142.9229898 80166.59659 0.043899395 0.049777463 1.56E-06 5.805961429 0.220980192 SLPTPAVLLS(ph)PTK ddPTM_HeLa_A486_30min_R1 2 SLPTPAVLLSPTK 13 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPTPAVLLS(1)PTK;SLPTPAVLLS(1)PTK ; 189.1 2.19E-17 266230000 510410 529460 228950 211107 351640 519770 593990 499970 368900 682980 TRUE FALSE FALSE 474632.8948 487503.6613 317605.5715 491467.7648 307534.0323 455646.062 445367.4194 386137.7453 400876.549 511957.3625 0.927094578 0.952234887 0.620375044 0.959977921 0.600702431 0.890007831 0.869930686 0.754238094 0.783027217 1 18.96566414 SLPTPAVLLS(ph)PTKEPPPLLAK ddPTM_HeLa_A485_30min_R1 2 SLPTPAVLLSPTKEPPPLLAK 21 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPTPAVLLS(0.92)PT(0.08)KEPPPLLAK;SLPTPAVLLS(0.967)PT(0.033)KEPPPLLAK ; 238.07 1.33E-46 1252960000 666450 453167 315754 1180740 753860 534340 826390 661690 521480 1412550 TRUE FALSE FALSE 814699.5033 506160.9386 432564.5442 1245240.836 678803.0514 562317.2162 649825.0255 499409.49 626136.2527 1060427.281 0.768274749 0.477317915 0.40791533 1.174282158 0.640122207 0.530274189 0.612795462 0.47095119 0.590456568 1 20.01621426 -10.10946272 3.541736298 1.00024906 0.627377287 0.22428086 0.206221904 68005854.79 113832327 205920.4422 0.054129285 7.77E-11 10.10946272 -0.372871773 SLPTPAVLLS(ph)PTKEPPPLLAK ddPTM_HeLa_A486_30min_R1 1 SLPTPAVLLSPTKEPPPLLAK 21 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPTPAVLLS(0.975)PT(0.025)KEPPPLLAK 243.35 8.41E-47 1308700000 1006300 960350 402800 591590 850200 1210100 1522300 1343100 730010 1386000 TRUE FALSE FALSE 935763.5665 884248.3685 558774.9474 1377251.417 743559.9882 1060810.165 1141404.439 1037305.45 793287.8546 1038936.579 0.900693638 0.851109092 0.537833549 1.325635699 0.715693338 1.021053823 1.098627637 0.998430001 0.763557536 1 19.98667616 -5.241848346 24.99937137 0.983449997 0.772001852 0.244194572 0.181650776 1257.493187 1604637.232 0.047709334 0.082487365 5.73E-06 5.241848346 -0.211448145 SLPTPAVLLS(ph)PTKEPPPLLAKPK ddPTM_HeLa_A485_30min_R1 1 SLPTPAVLLSPTKEPPPLLAKPK 23 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPT(0.002)PAVLLS(0.968)PT(0.029)KEPPPLLAKPK 126.59 2.43E-06 993230000 127620 76241 54349 166500 126880 112930 193500 223520 103630 232910 TRUE FALSE FALSE 156008.6287 85156.72174 74454.95675 175595.4734 114247.3817 118842.8402 152157.1443 168701.3695 124427.5904 174849.8234 0.892243559 0.487027782 0.425822316 1.004264517 0.6534029 0.679685217 0.870216174 0.964835802 0.711625485 1 17.41575681 -6.853114054 0.414060754 0.973233133 0.616400299 0.221970607 0.175174173 1.703389667 0.69771512 0.195558486 0.20692266 1.40E-07 6.853114054 -0.356832835 SLPTPAVLLS(ph)PTKEPPPLLAKPK ddPTM_HeLa_A486_30min_R1 3 SLPTPAVLLSPTKEPPPLLAKPK 23 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPTPAVLLS(0.98)PT(0.02)KEPPPLLAKPK;SLPTPAVLLS(0.92)PT(0.08)KEPPPLLAKPK;SLPTPAVLLS(0.967)PT(0.033)KEPPPLLAKPK ;; 250.22 1.29E-49 1135860000 926258 722219 264134 505887 690121 982929 1327270 1172990 555469 1408960 TRUE FALSE FALSE 861332.0974 664987.7362 366413.7586 1177730.502 603559.5891 861665.2137 995173.0076 905925.7832 603617.5002 1056147.245 0.815541679 0.629635441 0.346934351 1.115119608 0.571472957 0.815857086 0.942267295 0.85776466 0.571527789 1 20.01037955 -5.255816388 24.99882298 0.825391256 0.600597015 0.247279445 0.192234258 711.0910419 3161375.475 0.051452602 0.086073425 5.55E-06 5.255816388 -0.224794241 SLPTTVPES(ph)PNYR ddPTM_HeLa_A485_30min_R1 10 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR ;;;;;;;;; 302.35 2.14E-83 29294660000 2457997 3621780 3721037 2802455 4170110 3500074 4183850 4796460 3504181 4000900 TRUE FALSE FALSE 3004769.953 4045315.666 5097603.432 2955546.02 3754919.206 3683332.462 3289936.269 3620120.664 4207437.984 3003549.261 1.000406416 1.34684512 1.697193217 0.984017828 1.250160687 1.226326636 1.095349529 1.205280936 1.400822034 1 21.51823689 -5.315041883 24.9999691 1.177624734 1.348023325 0.154275378 0.194107591 622.5960642 290374.7783 0.054746471 0.081202212 4.84E-06 5.315041883 0.170398591 SLPTTVPES(ph)PNYR ddPTM_HeLa_A486_30min_R1 6 SLPTTVPESPNYR 13 0 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR ;;;;; 337.22 4.00E-81 33135750000 4952210 5071090 4439500 1547710 5849770 4238230 5163220 5275050 4428730 4979400 TRUE FALSE FALSE 4605085.652 4669238.36 6158593.294 3603147.097 5116037.3 3715360.274 3871327.745 4074036.269 4812615.882 3732525.83 1.233771945 1.250959423 1.649980087 0.965337485 1.370663602 0.995401089 1.037187128 1.091495801 1.289372426 1 21.83172081 -5.282402265 24.99922862 1.114296682 1.365509454 0.368096096 0.162366906 884.9580809 1055352.139 0.044962896 0.066768881 5.22E-06 5.282402265 0.251212772 SLQELFLAHILSPWGAEVK ddPTM_HeLa_A485_30min_R1 2 SLQELFLAHILSPWGAEVK 19 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ; ; 192.64 2.03E-19 23584000 49774 60559 46716 51549 64687 65305 87004 101238 45176 79515 FALSE FALSE TRUE 60846.05458 67640.84826 63998.19241 54364.99134 58246.53515 68724.26882 68414.88464 76409.22176 54242.40882 59693.37387 1.019310028 1.133138301 1.072115518 0.910737454 0.975762155 1.151288064 1.146105174 1.280028533 0.908683918 1 15.86528318 -6.267416642 24.78297704 1.117778173 1.024954536 0.093684874 0.107362843 898.055161 3723513.613 0.037621875 0.034030515 5.40E-07 6.267416642 -0.092823637 SLQELFLAHILSPWGAEVK ddPTM_HeLa_A486_30min_R1 2 SLQELFLAHILSPWGAEVK 19 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ; ; 178.77 4.48E-18 19746500 54299 56473 40694 18894.7 56310 52902 70470 61520 50002 65885 FALSE FALSE TRUE 50492.9205 51997.87381 56451.80662 43987.81649 49247.07473 46375.48911 52837.66064 47513.23897 54336.21362 49386.96716 1.022393627 1.052866309 1.143050685 0.89067661 0.997167422 0.939022819 1.069870528 0.96206027 1.100213614 1 15.59184276 -5.246873523 24.99460391 0.993548112 1.070779804 0.246267776 0.06299969 1168.631848 2005335.847 0.01669709 0.02875659 5.66E-06 5.246873523 0.077231692 SLQIDWVS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SLQIDWVSPR 10 0 O75445;O75445-3 O75445 USH2A Usherin 1 0 S(0.001)LQIDWVS(0.999)PR 62.633 0.024912 482620000 264610 617410 596450 324160 904840 676090 787450 786940 501670 483130 TRUE FALSE FALSE 246062.2054 568484.183 827411.4135 754660.8621 791346.5299 592680.8898 590421.6812 607770.9408 545155.1595 362151.1034 0.67944624 1.569743065 2.28471322 2.083828698 2.185128038 1.636556908 1.630318604 1.678224739 1.505325138 1 18.46623225 -8.244800428 0.976406523 1.000659929 1.776688236 0.20588352 0.424066055 1.492820029 2.795543995 0.434270328 0.143158666 5.69E-09 8.244800428 0.776028307 SLQT(ph)LPTDSSTFDTDTFCPPRPKPVAR ddPTM_HeLa_A486_30min_R1 1 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 S(0.445)LQT(0.548)LPT(0.007)DSSTFDTDTFCPPRPKPVAR 95.357 0.0024082 958730000 192430 220990 154450 80457 215580 189580 246860 224430 155720 234190 TRUE FALSE FALSE 178941.6507 203477.9476 214257.1763 187307.9621 188539.9462 166191.5471 185093.017 173332.1883 169217.935 175547.2997 1.01933582 1.15910611 1.220509667 1.066994265 1.074012227 0.946705232 1.054376896 0.987381683 0.963944961 1 17.42150028 -5.859168787 2.065675197 0.994390619 1.132977287 0.525278565 0.056520303 0.249248755 2.179758472 0.019893488 0.024024019 1.38E-06 5.859168787 0.138586669 SLQTLPTDS(ph)STFDTDTFCPPRPKPVAR ddPTM_HeLa_A485_30min_R1 1 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 S(0.027)LQT(0.01)LPT(0.028)DS(0.399)S(0.399)T(0.108)FDT(0.028)DT(0.003)FCPPRPKPVAR 45.972 0.037503 272410000 39441 44181 35033 44541 55588 54056 57217 63220 34435 73370 TRUE FALSE FALSE 48214.51438 49347.58363 47993.16454 46974.16205 50053.46354 56886.28857 44992.12053 47715.19587 41345.78864 55080.20927 0.875350966 0.895922225 0.871332284 0.852831946 0.908737715 1.032789986 0.816847305 0.866285668 0.750646905 1 15.74924642 -10.02935749 4.226466647 1.000009291 0.878146533 0.233924817 0.067835021 17255385.25 10236708.41 1396.238703 0.016812617 9.35E-11 10.02935749 -0.121862758 SLQTTS(ph)PPVVAPGNENGLAVPVPLRK ddPTM_HeLa_A486_30min_R1 1 SLQTTSPPVVAPGNENGLAVPVPLRK 26 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 S(0.021)LQT(0.057)T(0.195)S(0.728)PPVVAPGNENGLAVPVPLRK 59.211 0.01516 162870000 113950 113770 73046 44914 120620 106550 126460 116880 77614 107400 TRUE FALSE FALSE 105962.6934 104754.4509 101331.3674 104562.0618 105490.7149 93404.94432 94818.37044 90268.97547 84341.64401 80506.34094 1.316203074 1.301195032 1.258675606 1.298805294 1.310340448 1.160218478 1.177775183 1.121265411 1.047639764 1 16.2968148 -7.09886707 0.662066303 0.999514351 1.307244498 0.931538492 0.028734886 0.176661576 0.151813562 0.027425082 0.015258299 7.96E-08 7.09886707 0.307730147 SLRLS(ph)AQK ddPTM_HeLa_A485_30min_R1 3 SLRLSAQK 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SLRLS(1)AQK;SLRLS(1)AQK;SLRLS(1)AQK ;; 120.77 0.00035907 666990000 662240 662050 533860 781180 964580 787230 1014800 1119870 722590 1164090 TRUE FALSE FALSE 809553.0033 739470.9884 731357.0298 823853.8853 868543.0284 828448.1455 797979.6898 845220.1266 867607.185 873903.7865 0.926363995 0.846169796 0.836885068 0.942728362 0.993865734 0.947985531 0.91312076 0.967177554 0.992794857 1 19.73711493 -5.396084444 5.105978363 0.963978792 0.868093203 0.644019386 0.032861647 0.14657337 5.464395468 0.009633667 0.014434529 4.02E-06 5.396084444 -0.095885589 SLRLS(ph)AQK ddPTM_HeLa_A486_30min_R1 3 SLRLSAQK 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SLRLS(1)AQK;SLRLS(1)AQK;SLRLS(1)AQK ;; 119.45 0.00038809 498060000 563540 509606 303618 252420 558582 595184 680944 700219 448911 774570 TRUE FALSE FALSE 524038.7561 469222.9646 421187.0208 587646.5166 488519.437 521756.2495 510564.6089 540794.4194 487822.9669 580612.6304 0.902561758 0.808151494 0.725418289 1.012114594 0.841386169 0.898630554 0.879354982 0.93142035 0.840186626 1 19.14721643 -13.99999997 0.101532973 1.403622291 0.786857843 0.233493551 0.071841909 267.5397473 1.838712788 22.89367615 1.155190273 1.00E-14 13.99999997 -0.616764448 SLRQS(ph)FR ddPTM_HeLa_A485_30min_R1 1 SLRQSFR 7 1 J3QRV5;A0A087WW77;Q6P1M3-2;Q6P1M3;Q15334 J3QRV5 LLGL2;LLGL1 Lethal(2) giant larvae protein homolog 2;Lethal(2) giant larvae protein homolog 1 1 0 SLRQS(1)FR 81.338 0.0056267 539240000 160120 212830 214790 157050 203700 151440 193840 178960 192770 218590 TRUE FALSE FALSE 195738.1416 237718.6171 294249.7592 165629.2438 183418.9128 159369.1642 152424.5005 135069.7794 231457.1708 164099.5359 1.192801312 1.448624555 1.793117559 1.00932183 1.117729626 0.971173766 0.92885394 0.823096657 1.410468163 1 17.32421163 -5.290093739 24.60616865 1.02594935 1.475225489 0.509416433 0.198073653 442.7796904 380224.2586 0.055574354 0.082448098 5.13E-06 5.290093739 0.449276139 SLRVDIAEGR ddPTM_HeLa_A485_30min_R1 2 SLRVDIAEGR 10 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 0 ; ; 152.85 4.68E-05 25349000 43538 83675 62938 29486 86448 79592 91141 133328 52008 48604 FALSE FALSE TRUE 53222.8779 93460.06337 86221.38527 31096.74552 77840.93358 83759.31405 71667.9808 100629.0989 62445.52855 36487.91729 1.458643898 2.561397589 2.363011969 0.852247753 2.133334522 2.295535626 1.964156524 2.757874563 1.71140293 1 15.15513118 SLS(ph)AIDR ddPTM_HeLa_A485_30min_R1 6 SLSAIDR 7 0 O95831-3;O95831;O95831-6;O95831-4 O95831-3 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 1 0 S(0.105)LS(0.895)AIDR;S(0.067)LS(0.933)AIDR;SLS(1)AIDR;SLS(1)AIDR;SLS(1)AIDR;SLS(1)AIDR ;;;;; 153.24 0.00072288 2083050000 2145130 2685270 2047730 2247420 2378650 2695430 3101370 3356610 2124350 3708290 TRUE FALSE FALSE 2622306.768 2999288.968 2805270.54 2370190.864 2141823.254 2836558.547 2438736.964 2533396.135 2550687.559 2783881.549 0.941960612 1.077376647 1.007683154 0.851397885 0.7693658 1.018922141 0.876020377 0.910022963 0.916234227 1 21.4086664 -5.199834255 8.080898673 0.900072436 1.016472169 0.289044814 0.07336789 0.387671721 46.81954367 0.019730914 0.034258124 6.31E-06 5.199834255 0.116399732 SLS(ph)AIDR ddPTM_HeLa_A486_30min_R1 3 SLSAIDR 7 0 O95831-3;O95831;O95831-6;O95831-4 O95831-3 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 1 0 SLS(1)AIDR;SLS(1)AIDR;SLS(1)AIDR ;; 156.35 7.04E-05 731400000 1569960 1761620 1618530 577520 2202450 1638440 1836730 1847950 2093410 2030820 TRUE FALSE FALSE 1459913.911 1622022.815 2245268.162 1344495.746 1926198.184 1436305.931 1377160.727 1427212.125 2274868.464 1522289.454 0.959025176 1.065515373 1.47492854 0.883206373 1.265329783 0.943516969 0.904664171 0.9375432 1.494373136 1 20.53781127 SLS(ph)ASPALGSTK ddPTM_HeLa_A485_30min_R1 3 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 S(0.007)LS(0.992)AS(0.001)PALGSTK;SLS(0.998)AS(0.002)PALGSTK;SLS(0.824)AS(0.176)PALGSTK ;; 240.75 8.63E-28 3331030000 3618500 3853300 3197100 4172600 4900300 4465700 6250700 5950000 3615200 5658500 TRUE FALSE FALSE 4423422.841 4303909.916 4379840.332 4400538.572 4412408.926 4699517.147 4915186.881 4490753.171 4340737.479 4247940.087 1.041310082 1.013175758 1.031050402 1.035922937 1.038717316 1.10630495 1.157075378 1.057160195 1.021845269 1 22.01833199 -6.100094977 6.426540198 1.077480039 1.03013439 0.147560123 0.041387905 0.392002626 21.34003349 0.014261473 0.014315209 7.94E-07 6.100094977 -0.047345648 SLS(ph)ASPALGSTK ddPTM_HeLa_A486_30min_R1 3 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 SLS(0.997)AS(0.003)PALGSTK;SLS(0.999)AS(0.001)PALGSTK;S(0.001)LS(0.998)AS(0.001)PALGSTK ;; 305.6 1.71E-50 4815500000 4935100 5154600 3200020 1902700 5296200 5302900 6387300 6097900 4190900 6264300 TRUE FALSE FALSE 4589174.975 4746130.723 4439153.444 4429581.757 4631901.211 4648682.114 4789129.982 4709541.286 4554170.586 4695678.506 0.97731882 1.010744393 0.945369969 0.943331566 0.986417874 0.989991565 1.019901592 1.002952242 0.969864223 1 22.16290221 -6.082714406 3.600976845 0.998034839 0.970042827 0.264343222 0.021093785 0.358534506 8.810101362 0.007717891 0.007925234 8.27E-07 6.082714406 -0.027992013 SLS(ph)DFTGPPQLQALK ddPTM_HeLa_A485_30min_R1 1 SLSDFTGPPQLQALK 15 0 O95425-3;O95425;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 SLS(1)DFTGPPQLQALK 322.39 1.96E-78 409530000 377010 382330 351790 408270 505280 425160 579670 559170 360830 535200 TRUE FALSE FALSE 460874.5738 427040.1677 481931.7602 430572.7563 454972.5491 447420.7202 455818.769 422032.6808 433245.2713 401784.4896 1.147069102 1.062858768 1.199478259 1.071651015 1.132379574 1.113583853 1.134485728 1.050395652 1.078302629 1 18.61606235 -7.90095746 0.850508922 1.001924461 1.123562882 0.487046743 0.038991273 0.485135487 0.79455786 0.034669503 0.012680142 1.26E-08 7.90095746 0.121638422 SLS(ph)DFTGPPQLQALK ddPTM_HeLa_A486_30min_R1 1 SLSDFTGPPQLQALK 15 0 O95425-3;O95425;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(0.001)LS(0.999)DFT(0.001)GPPQLQALK 223.07 1.19E-33 392360000 246060 234290 150710 103970 224670 229570 243190 236330 184690 235620 TRUE FALSE FALSE 228812.4647 215724.0071 209068.9482 242047.4144 196489.7936 201247.9875 182341.2898 182522.818 200699.0779 176619.2184 1.295512837 1.221407325 1.18372706 1.370447772 1.11250517 1.139445579 1.032397785 1.033425579 1.136337709 1 17.43028281 -5.918548326 6.868228578 1.074338316 1.25813155 0.701972679 0.061659341 0.130385378 9.085123732 0.019208233 0.021822802 1.21E-06 5.918548326 0.183793233 SLS(ph)DPIPQR ddPTM_HeLa_A485_30min_R1 3 SLSDPIPQR 9 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 SLS(1)DPIPQR;S(0.002)LS(0.998)DPIPQR;SLS(1)DPIPQR ;; 114.45 0.00072818 830430000 555910 758200 712000 594000 954940 707750 908090 944650 716020 792550 TRUE FALSE FALSE 679570.2616 846864.8945 975398.4288 626448.7159 859862.8206 744806.6956 714069.1531 712973.1063 859718.6463 594981.8708 1.142169695 1.423345712 1.639375041 1.052887065 1.445191632 1.251814101 1.200152791 1.19831064 1.444949314 1 19.18248618 -13.18735453 0.211897959 8.52E-15 1.357785574 0.22247445 0.168927134 151.6488387 2.066977155 65.316814 0.357015382 6.50E-14 13.18735453 1.357785574 SLS(ph)DPIPQR ddPTM_HeLa_A486_30min_R1 3 SLSDPIPQR 9 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.178)LS(0.822)DPIPQR;SLS(1)DPIPQR;S(0.019)LS(0.981)DPIPQR ;; 126.33 0.00028587 753950000 711950 791990 726110 253846 912060 724860 914130 858080 653430 699300 TRUE FALSE FALSE 662045.9815 729229.828 1007279.238 590966.3167 797660.9302 635434.143 685405.0053 662713.9158 710069.8385 524190.7283 1.262986821 1.391153618 1.921589192 1.127387962 1.521699807 1.212219348 1.307548891 1.264261041 1.354602056 1 18.99973231 -6.128453126 1.137560246 1.23719976 1.476859015 0.189508388 0.213766878 0.874455343 2.367558744 0.104351665 0.10656914 7.44E-07 6.128453126 0.239659255 SLS(ph)DS(ph)ESDDSK ddPTM_HeLa_A485_30min_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 SLS(1)DS(1)ESDDSK 269.15 7.31E-28 320700000 253500 201180 147590 477020 280660 217620 381990 334770 187540 573920 TRUE FALSE FALSE 309890.2004 224706.251 202189.6827 503078.3947 252716.5049 229014.2467 300374.7159 252667.1326 225177.5578 430852.3062 0.719249255 0.52153893 0.469278404 1.167635376 0.586550197 0.531537707 0.697163997 0.586435604 0.522632825 1 18.71683388 -10.33613973 3.541459886 1.00156872 0.646064915 0.238775814 0.190318843 170091959.2 240794750.5 2766788.984 0.04713786 4.61E-11 10.33613973 -0.355503806 SLS(ph)DS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 2 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 S(0.001)LS(0.999)DS(0.999)ES(0.001)DDSK;S(0.001)LS(0.999)DS(0.999)ES(0.001)DDSK ; 208.82 1.10E-14 635700000 816680 806790 394200 561560 720960 1077770 1372720 1200500 687500 1596580 TRUE FALSE FALSE 759434.9493 742857.0221 546844.797 1307340.06 630530.4741 944805.6954 1029250.937 927172.3567 747093.0535 1196785.976 0.634562039 0.620709999 0.456927812 1.092375818 0.526853161 0.789452512 0.860012531 0.774718601 0.624249505 1 20.19073374 -13.99999464 0.040566763 2.22293784 9.11E-08 0.227062781 0.170043318 1265.811094 3.82508511 190.3612119 56.18362368 1.00E-14 13.99999464 -2.222937748 SLS(ph)DSESDDSK ddPTM_HeLa_A485_30min_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 SLS(1)DSESDDSK 346.31 1.39E-80 752700000 730570 553960 433580 1198500 798850 663280 1145800 951700 556270 1470900 TRUE FALSE FALSE 893082.7761 618740.8032 593979.2848 1263971.02 719313.6891 698008.3152 900990.4697 718294.0828 667908.2866 1104231.7 0.808782048 0.560336027 0.537911821 1.144661053 0.65141554 0.632121243 0.815943311 0.650492177 0.604862446 1 20.07461149 -10.765083 2.846158721 1.061677452 0.712131123 0.207178105 0.169111952 145062033.3 115504156.5 62538633.31 0.043765894 1.72E-11 10.765083 -0.34954633 SLS(ph)DSESDDSK ddPTM_HeLa_A486_30min_R1 2 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 SLS(0.998)DS(0.002)ESDDSK;SLS(0.999)DS(0.001)ESDDSK ; 236.08 1.15E-21 499010000 809830 825760 409130 478540 794480 1007800 1217100 1127340 672590 1451630 TRUE FALSE FALSE 753065.099 760323.7702 567556.0929 1114065.304 694828.9102 883467.8826 912568.7068 870669.2917 730890.6427 1088132.399 0.692071203 0.698741964 0.521587348 1.02383249 0.638551807 0.811912119 0.838655946 0.80015014 0.671692749 1 20.05342268 -14 0.098045312 1.733520862 0.583024378 0.270929251 0.127939444 264.2077957 1.76689675 40.67254051 2.264911692 1.00E-14 14 -1.150496484 SLS(ph)EGLYPYPPEMGKPATGDFGYR ddPTM_HeLa_A485_30min_R1 1 SLSEGLYPYPPEMGKPATGDFGYR 24 1 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5 F8VV64 TNS2 Tensin-2 1 0 S(0.149)LS(0.851)EGLYPYPPEMGKPATGDFGYR 73.341 0.0038916 62343000 32669 33374 31564 38935 47505 37458 50289 51465 38774 51726 TRUE FALSE FALSE 39936.10634 37276.79898 43240.83709 41061.92046 42775.2354 39419.24296 39544.34433 38843.12806 46555.58614 38831.66015 1.0284419 0.959958932 1.113545929 1.057434071 1.10155567 1.01513154 1.018353173 1.000295324 1.198907952 1 15.24494577 -4.751680532 24.99946192 1.061015744 0.994200424 0.169436451 0.060918234 358.2672626 917762.7628 0.015088366 0.038850855 1.77E-05 4.751680532 -0.06681532 SLS(ph)ELCLAVPAPGIR ddPTM_HeLa_A485_30min_R1 2 SLSELCLAVPAPGIR 15 0 A0A5F9ZHW8;O94827-5;O94827-3;O94827;O94827-7;O94827-2;O94827-6 A0A5F9ZHW8 PLEKHG5 Pleckstrin homology domain-containing family G member 5 1 0 S(0.03)LS(0.97)ELCLAVPAPGIR;S(0.026)LS(0.974)ELCLAVPAPGIR ; 138.77 4.56E-06 77955000 49736 77622 74569 56947 91761 81760 82971 91414 71202 76052 TRUE FALSE FALSE 60799.60161 86699.21768 102155.1762 60057.87041 82624.95265 86040.82718 65243.56804 68994.57317 85491.5883 57093.63603 1.064910309 1.518544337 1.789256794 1.051918823 1.447183231 1.50701257 1.142746768 1.208445949 1.497392603 1 15.80104232 -12.75432567 0.221836199 1.37E-08 1.414710526 0.174889867 0.227155296 144.4364461 2.37958392 65.59066152 0.443137638 1.76E-13 12.75432567 1.414710513 SLS(ph)ELCLAVPAPGIR ddPTM_HeLa_A486_30min_R1 1 SLSELCLAVPAPGIR 15 0 A0A5F9ZHW8;O94827-5;O94827-3;O94827;O94827-7;O94827-2;O94827-6 A0A5F9ZHW8 PLEKHG5 Pleckstrin homology domain-containing family G member 5 1 0 SLS(1)ELCLAVPAPGIR 184.76 7.39E-18 45312000 6615.5 7118.3 7836.7 4729.7 8962.5 7730.2 8423.4 9905.7 5349 10573 TRUE FALSE FALSE 6151.787612 6554.219984 10871.28011 11010.98063 7838.339678 6776.526519 6315.776226 7650.38835 5812.655627 7925.451981 0.776206534 0.826983748 1.371692131 1.38931895 0.989008538 0.855033446 0.796897923 0.965293635 0.733416295 1 12.9522775 -6.000558738 24.99851222 0.869897612 1.10435046 0.218180031 0.196848525 33.84502945 1514390.907 0.067509315 0.07568809 9.99E-07 6.000558738 0.234452847 SLS(ph)ELESLKLPAESNEK ddPTM_HeLa_A486_30min_R1 1 SLSELESLKLPAESNEK 17 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 SLS(1)ELESLKLPAESNEK 180.45 7.31E-18 172220000 304100 305270 143870 137280 298340 381760 438390 432270 243150 458500 TRUE FALSE FALSE 282784.1604 281079.2934 199580.317 319594.7777 260919.4153 334662.3327 328700.1852 333851.5574 264226.4378 343688.6157 0.822791758 0.817831259 0.580700983 0.929896317 0.759173867 0.973737032 0.956389506 0.971377992 0.768796014 1 18.39074254 -5.972092974 1.622552288 0.931422134 0.763658939 0.326537943 0.103393425 0.441031916 2.370443603 0.039485621 0.044769073 1.07E-06 5.972092974 -0.167763195 SLS(ph)ES(ph)S(ph)VIMDR ddPTM_HeLa_A485_30min_R1 1 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 3 0 S(0.655)LS(0.803)ES(0.803)S(0.74)VIMDR 53.211 0.035441 121980000 4605.6 18297 9950.4 9310.3 9996 11304 9061.2 14048 9586 8751.4 TRUE FALSE FALSE 5630.099831 20436.67499 13631.46703 9818.898114 9000.763142 11895.85996 7125.200597 10602.70597 11509.82227 6569.837038 0.85696187 3.110682178 2.074856188 1.494542111 1.370013151 1.810678087 1.084532319 1.613846114 1.751918991 1 12.68164187 -5.255352547 5.952106124 1.467534414 2.128042072 0.166989177 0.563680885 0.234355471 36.51408002 0.148345147 0.243318359 5.55E-06 5.255352547 0.660507657 SLS(ph)ES(ph)S(ph)VIMDR ddPTM_HeLa_A486_30min_R1 1 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 3 0 S(0.679)LS(0.79)ES(0.79)S(0.741)VIMDR 55.401 0.031895 118460000 8235.6 12022 13445 2643.5 14027 10209 8251.2 7476.5 10462 7609.5 TRUE FALSE FALSE 7658.326969 11069.33294 18651.26407 6154.201595 12267.60286 8949.517378 6186.662488 5774.264161 11368.85458 5704.03167 1.342616488 1.940615616 3.269838799 1.078921358 2.150689823 1.568981011 1.084612226 1.012312781 1.993126133 1 12.47776628 -6.480134118 4.243986185 1.27538705 1.976814978 0.223514746 0.601043017 0.338595662 13.25411964 0.225934092 0.189321078 3.31E-07 6.480134118 0.701427928 SLS(ph)ESSVIMDR ddPTM_HeLa_A485_30min_R1 5 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 SLS(0.861)ES(0.118)S(0.021)VIMDR;SLS(0.925)ES(0.062)S(0.013)VIMDR;SLS(0.993)ES(0.006)S(0.001)VIMDR;SLS(0.997)ES(0.001)S(0.001)VIMDR;SLS(0.989)ES(0.011)SVIMDR ;;;; 299.42 5.64E-44 2795840000 2222060 2746530 2855150 2419050 3823640 2627930 3165120 3281800 2631300 3255010 TRUE FALSE FALSE 2716349.581 3067712.792 3911388.798 2551196.576 3442944.976 2765524.351 2488866.255 2476933.404 3159377.774 2443595.911 1.111619793 1.255409202 1.600669235 1.044033739 1.408966581 1.13174373 1.018526117 1.013642801 1.292921534 1 21.2205743 -6.449695383 6.840718845 1.081274145 1.286210556 0.264365899 0.162478686 0.348981962 27.64062658 0.056740889 0.049681339 3.55E-07 6.449695383 0.204936411 SLS(ph)ESSVIMDR ddPTM_HeLa_A486_30min_R1 5 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 S(0.002)LS(0.99)ES(0.004)S(0.004)VIMDR;S(0.007)LS(0.988)ES(0.003)S(0.003)VIMDR;SLS(0.988)ES(0.011)S(0.002)VIMDR;SLS(0.92)ES(0.073)S(0.006)VIMDR;SLS(0.925)ES(0.074)S(0.001)VIMDR ;;;; 229.95 2.22E-18 2299729000 2026820 2541840 2233914 1063808 3318910 2456830 2909260 2941500 2181870 2592220 TRUE FALSE FALSE 1884750.385 2340415.341 3098945.327 2476598.786 2902621.36 2153731.294 2181332.377 2271784.662 2370996.248 1943111.239 0.969965253 1.204468017 1.594836808 1.274553271 1.493800922 1.108393205 1.122597787 1.169148022 1.220206131 1 20.88993706 -6.303519713 24.95854898 1.134548776 1.315929605 0.235163539 0.164535434 782.3786841 464039.5246 0.060008989 0.052923276 4.97E-07 6.303519713 0.181380829 SLS(ph)FEMQQDELIEKPMSPMQYAR ddPTM_HeLa_A485_30min_R1 6 SLSFEMQQDELIEKPMSPMQYAR 23 1 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 0 S(0.003)LS(0.997)FEMQQDELIEKPMSPMQYAR;S(0.007)LS(0.993)FEMQQDELIEKPMSPMQYAR;S(0.003)LS(0.997)FEMQQDELIEKPMSPMQYAR;S(0.038)LS(0.962)FEMQQDELIEKPMSPMQYAR;S(0.391)LS(0.609)FEMQQDELIEKPMSPMQYAR;S(0.156)LS(0.844)FEMQQDELIEKPMSPMQYAR ;;;;; 232.2 3.32E-39 3816670000 1027107 1012980 865610 1199790 1367780 1304080 1834460 2037550 1285560 1968010 TRUE FALSE FALSE 1255583.409 1131439.199 1185835.16 1265331.49 1231599.021 1372359.612 1442512.635 1537837.668 1543560.1 1477421.326 0.849847898 0.765820271 0.802638448 0.856445936 0.833613946 0.928888455 0.976371878 1.040893103 1.04476636 1 20.49464988 -6.522277334 1.192288562 1.035335795 0.808798577 0.922941308 0.026740341 0.11332898 0.329380431 0.015415295 0.010970306 3.00E-07 6.522277334 -0.226537217 SLS(ph)FEMQQDELIEKPMSPMQYAR ddPTM_HeLa_A486_30min_R1 6 SLSFEMQQDELIEKPMSPMQYAR 23 1 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 0 S(0.018)LS(0.982)FEMQQDELIEKPMSPMQYAR;S(0.002)LS(0.998)FEMQQDELIEKPMSPMQYAR;SLS(1)FEMQQDELIEKPMSPMQYAR;S(0.013)LS(0.987)FEMQQDELIEKPMSPMQYAR;S(0.013)LS(0.987)FEMQQDELIEKPMSPMQYAR;S(0.066)LS(0.934)FEMQQDELIEKPMSPMQYAR ;;;;; 285.17 1.33E-75 3779840000 1542160 1552530 983310 673710 1590210 1843510 2217130 2365250 1560430 2180170 TRUE FALSE FALSE 1434062.548 1429501.869 1364073.966 1568430.927 1390751.034 1616076.48 1662380.624 1826734.208 1695689.329 1634241.241 0.877509704 0.874719002 0.834683357 0.959730355 0.851007182 0.988884896 1.017218622 1.117787363 1.037600377 1 20.64018953 -6.51893491 2.059942328 1.056965083 0.879779604 0.763506393 0.042982772 0.145015861 1.235717566 0.018395746 0.014154005 3.03E-07 6.51893491 -0.177185479 SLS(ph)FSDEMSSCR ddPTM_HeLa_A485_30min_R1 1 SLSFSDEMSSCR 12 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 0 S(0.017)LS(0.979)FS(0.004)DEMSSCR 67.019 0.014713 57942000 48251 52018 60298 47605 72357 57496 73668 65368 65332 65904 TRUE FALSE FALSE 58984.26849 58101.0526 82604.73941 50205.54061 65152.88302 60506.40165 57928.22999 49336.39551 78443.53314 49475.34567 1.192195177 1.17434354 1.669614194 1.014758764 1.316875752 1.222960665 1.170850435 0.997191527 1.585507531 1 15.59442217 SLS(ph)FSDEMSSCR ddPTM_HeLa_A486_30min_R1 1 SLSFSDEMSSCR 12 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 0 S(0.005)LS(0.994)FS(0.001)DEMSSCR 126.32 3.97E-05 39518000 41461 46487 37919 19176 47694 37313 45923 36981 36313 40056 TRUE FALSE FALSE 38554.798 42803.20082 52602.25231 44642.6971 41711.77379 32709.70143 34432.57968 28561.23359 39460.64008 30025.71688 1.2840592 1.425551336 1.751906625 1.486815362 1.389201595 1.089389524 1.146769611 0.951225701 1.314228074 1 14.87391107 -6.143016059 2.875350382 1.096931591 1.499165084 0.634698015 0.140474904 0.179065039 2.855839299 0.05096105 0.05096567 7.19E-07 6.143016059 0.402233494 SLS(ph)GSSPCPK ddPTM_HeLa_A485_30min_R1 2 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLS(0.98)GS(0.02)SPCPK;SLS(0.998)GS(0.002)SPCPK ; 147.91 4.53E-06 665390000 851160 828810 682420 949380 1009720 940570 1221900 1166990 765150 1446990 TRUE FALSE FALSE 1040497.606 925732.1198 934875.5559 1001242.225 909188.7315 989816.7908 960831.083 880783.8727 918708.5866 1086282.023 0.957852182 0.852202375 0.860619559 0.921714807 0.836973007 0.911196881 0.884513471 0.810824311 0.845736712 1 20.05096728 -4.251165715 23.75510584 0.874912044 0.957852276 0.162704261 0.051345969 1189.935864 2751297.232 0.012038432 0.155373634 5.61E-05 4.251165715 0.082940232 SLS(ph)GTGR ddPTM_HeLa_A486_30min_R1 1 SLSGTGR 7 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 S(0.018)LS(0.976)GT(0.006)GR 67.897 0.022915 116460000 45584 42309 44497 18696 48860 49087 45341 46476 50067 52768 TRUE FALSE FALSE 42388.797 38956.28075 61727.43007 43525.23284 42731.5232 43031.14502 33996.20223 35894.42936 54406.84787 39554.54934 1.071654151 0.984874848 1.560564615 1.100385002 1.080318798 1.0878937 0.859476414 0.907466523 1.375489009 1 15.27155601 -5.511480463 24.63982082 1.043976039 1.208092082 0.115375914 0.189851886 973.7780436 2105030.348 0.055701454 0.077403041 3.08E-06 5.511480463 0.164116043 SLS(ph)KSDSDLLTCSPTEDATMGSR ddPTM_HeLa_A485_30min_R1 1 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.108)LS(0.418)KS(0.408)DS(0.065)DLLT(0.002)CSPTEDATMGSR 93.494 0.00081583 672200000 94222 79337 70953 111850 142030 115170 155060 155630 87885 171050 TRUE FALSE FALSE 115181.3588 88614.77201 97201.4673 117960.0823 127888.9945 121200.1231 121930.1643 117461.4985 105522.7134 128410.3829 0.896978548 0.690090396 0.756959563 0.918617946 0.995939671 0.943849869 0.949535088 0.914735209 0.821761535 1 16.97040233 -5.294707638 6.105433511 0.935536079 0.772016395 0.527574061 0.066480993 0.139083652 16.5092987 0.018646228 0.028547646 5.07E-06 5.294707638 -0.163519684 SLS(ph)KSDSDLLTCSPTEDATMGSR ddPTM_HeLa_A486_30min_R1 2 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.071)LS(0.598)KS(0.33)DS(0.001)DLLTCSPTEDATMGSR;S(0.018)LS(0.491)KS(0.491)DS(0.001)DLLTCSPTEDATMGSR ; 173.11 5.01E-15 1922290000 379220 446630 307040 239496 586960 521220 752320 627110 356620 601520 TRUE FALSE FALSE 352638.6363 411237.4122 425934.1108 557558.7915 513338.0036 456917.1758 564081.5788 484330.7427 387532.1087 450895.4768 0.782085105 0.912045992 0.944640461 1.236558848 1.138485592 1.013354978 1.251025144 1.07415303 0.859472159 1 18.78243351 -4.861497917 2.430790179 1.090901802 0.826523516 0.411655141 0.113089819 0.277132915 3.244757358 0.031786267 0.091352326 1.38E-05 4.861497917 -0.264378286 SLS(ph)LDPGQSLEPHPEGPQR ddPTM_HeLa_A485_30min_R1 2 SLSLDPGQSLEPHPEGPQR 19 0 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 S(0.2)LS(0.8)LDPGQSLEPHPEGPQR;S(0.138)LS(0.862)LDPGQSLEPHPEGPQR ; 165.85 1.41E-12 213310000 126421 204252 228935 144337 294355 203421 274742 326460 275748 260545 TRUE FALSE FALSE 154542.9153 228137.4946 313627.5833 152221.7648 265047.9827 214071.809 216041.1273 246395.1731 331088.0943 195595.9265 0.790113159 1.1663714 1.603446395 0.778246089 1.355079257 1.094459444 1.104527743 1.259715259 1.692714671 1 17.5775168 -7.524927674 24.98340277 1.389643198 1.144234843 0.089627873 0.276206257 145.6436203 1775737.487 0.174553978 0.066960082 2.99E-08 7.524927674 -0.245408356 SLS(ph)LGDK ddPTM_HeLa_A486_30min_R1 2 SLSLGDK 7 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.007)LS(0.993)LGDK;S(0.007)LS(0.993)LGDK ; 98.009 0.0050044 347050000 727170 719910 311372 260947 470820 723170 787700 669840 579140 1080420 TRUE FALSE FALSE 676199.1381 662861.7097 431943.5772 607497.8035 411765.3654 633952.6381 590609.1286 517332.0545 629340.3215 809875.7996 0.834941776 0.818473289 0.533345455 0.750112306 0.508430262 0.782777604 0.729258892 0.638779495 0.777082513 1 19.62734115 -8.07941407 5.60194905 0.999985236 0.697370407 0.425283549 0.105236559 0.575557023 39.0876055 0.100711403 0.026172407 8.33E-09 8.07941407 -0.302614829 SLS(ph)LGDKEISR ddPTM_HeLa_A485_30min_R1 6 SLSLGDKEISR 11 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.027)LS(0.973)LGDKEISR;S(0.003)LS(0.997)LGDKEISR;SLS(1)LGDKEISR;S(0.002)LS(0.998)LGDKEISR;S(0.003)LS(0.997)LGDKEISR;S(0.002)LS(0.998)LGDKEISR ;;;;; 194.48 1.46E-11 5513940000 5793450 5864300 4670540 8078300 8623370 7045880 10623540 11824850 6131820 10862850 TRUE FALSE FALSE 7082182.965 6550078.872 6398367.103 8519597.074 7764797.004 7414791.382 8353733.893 8924786.997 7362420.03 8154941.411 0.868452955 0.80320367 0.784600009 1.044715914 0.952158527 0.909239075 1.024376936 1.094402344 0.902817036 1 22.95924308 -5.256998715 24.99587507 0.990137767 0.817197349 0.639246252 0.058836168 239.7038317 1349254.139 0.016490988 0.027370427 5.53E-06 5.256998715 -0.172940418 SLS(ph)LGDKEISR ddPTM_HeLa_A486_30min_R1 5 SLSLGDKEISR 11 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.015)LS(0.985)LGDKEISR;S(0.052)LS(0.948)LGDKEISR;SLS(1)LGDKEISR;SLS(1)LGDKEISR;S(0.001)LS(0.999)LGDKEISR ;;;; 190.86 3.61E-11 3828220000 5203570 5229780 3107270 2427910 5662100 5534970 7225440 7107020 4248670 6899580 TRUE FALSE FALSE 4838826.614 4815353.186 4310488.16 5652297.18 4951906.621 4852121.677 5417558.489 5488906.691 4616948.136 5171880.259 0.935602986 0.931064322 0.833447014 1.092890186 0.957467376 0.93817363 1.047502691 1.0612981 0.892702055 1 22.30225744 -5.252446314 24.9996766 0.998939331 0.903140735 0.346122778 0.062019679 774.8714476 2154046.897 0.016766428 0.028525449 5.59E-06 5.252446314 -0.095798596 SLS(ph)LQPQLTQR ddPTM_HeLa_A485_30min_R1 2 SLSLQPQLTQR 11 0 P21731 P21731 TBXA2R Thromboxane A2 receptor 1 0 S(0.018)LS(0.982)LQPQLTQR;SLS(1)LQPQLTQR ; 145.06 9.51E-07 443200000 335920 332370 266760 352180 313320 373870 486410 528830 422440 783320 TRUE FALSE FALSE 410644.2451 371237.7803 365445.6248 371418.7016 282124.7607 393445.2551 382484.5299 399133.6133 507219.8332 588052.7399 0.698311932 0.631300145 0.621450424 0.631607807 0.479760983 0.669064573 0.650425555 0.678737784 0.862541399 1 19.16558602 -7.874652133 1.627731125 1.00194172 0.619932652 0.841375513 0.053991406 0.131581316 0.752696846 0.052475942 0.015479059 1.33E-08 7.874652133 -0.382009068 SLS(ph)LQPQLTQR ddPTM_HeLa_A486_30min_R1 2 SLSLQPQLTQR 11 0 P21731 P21731 TBXA2R Thromboxane A2 receptor 1 0 S(0.002)LS(0.998)LQPQLTQR;SLS(1)LQPQLTQR ; 145.41 9.30E-07 683400000 580800 629080 531110 212284 722620 699600 627370 673610 643330 724500 TRUE FALSE FALSE 540088.9193 579229.4097 736770.0156 494207.8802 631982.2614 613290.465 470395.3904 520243.7078 699094.3624 543080.4843 0.994491489 1.066562741 1.356649773 0.910008543 1.163699083 1.129280986 0.86616147 0.957949554 1.287275795 1 19.0508065 SLS(ph)MDSQVPVYSPSIDLK ddPTM_HeLa_A485_30min_R1 2 SLSMDSQVPVYSPSIDLK 18 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.142)LS(0.858)MDSQVPVYSPSIDLK;S(0.145)LS(0.855)MDSQVPVYSPSIDLK ; 276.62 4.21E-69 241770000 336270 324310 263490 433060 462900 361840 550720 566980 349850 651420 TRUE FALSE FALSE 411072.1014 362235.2334 360965.9157 456716.9712 416812.0507 380785.3829 433054.173 427927.266 420061.686 489032.9825 0.840581548 0.740717388 0.738121821 0.933918545 0.852318894 0.778649695 0.885531628 0.875047862 0.858963917 1 18.89957224 -14 0.089486367 1.55942559 0.690113788 0.503771564 0.055088177 183.9485115 1.142783582 19.52965569 1.386818348 1.00E-14 14 -0.869311802 SLS(ph)MDSQVPVYSPSIDLK ddPTM_HeLa_A486_30min_R1 2 SLSMDSQVPVYSPSIDLK 18 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.015)LS(0.985)MDSQVPVYSPSIDLK;S(0.114)LS(0.852)MDS(0.034)QVPVYSPSIDLK ; 293.59 1.41E-78 213493000 455630 462060 289070 187380 474270 502380 604640 589690 422580 670420 TRUE FALSE FALSE 423692.6899 425444.6828 401005.6456 436230.1097 414782.6342 440401.4634 453352.6768 455430.4598 459209.5746 502542.4683 0.843098278 0.846584537 0.797953747 0.868046259 0.825368323 0.876346759 0.90211814 0.906252682 0.913772673 1 18.93888599 -7.709481528 0.419000115 1.00472867 0.824363088 0.868402063 0.01954486 0.359998068 0.177945162 0.025104782 0.015975991 1.95E-08 7.709481528 -0.180365582 SLS(ph)MVDLQDAR ddPTM_HeLa_A485_30min_R1 6 SLSMVDLQDAR 11 0 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 SLS(1)MVDLQDAR;S(0.001)LS(0.999)MVDLQDAR;SLS(1)MVDLQDAR;SLS(1)MVDLQDAR;SLS(1)MVDLQDAR;S(0.007)LS(0.993)MVDLQDAR ;;;;; 284.92 3.38E-35 698617000 1000558 1283109 1177957 902742 1515884 1126437 1336375 1431812 1013919 1214621 TRUE FALSE FALSE 1223128.675 1433157.436 1613732.313 952056.5096 1364957.266 1185415.5 1050847.564 1080657.862 1217403.243 911838.3381 1.341387639 1.571723162 1.769757034 1.044106691 1.496929016 1.300028141 1.15244942 1.185141945 1.33510864 1 19.79841854 -6.293260164 0.262473738 1.001141153 1.657512989 0.36672241 0.181957145 3.374260034 0.517772326 0.325932391 0.748073872 5.09E-07 6.293260164 0.656371836 SLS(ph)MVDLQDAR ddPTM_HeLa_A486_30min_R1 4 SLSMVDLQDAR 11 0 A0A3B3ITG3;Q5VWQ8-2;Q5VWQ8;H0Y3A3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-5 A0A3B3ITG3 DAB2IP Disabled homolog 2-interacting protein 1 0 SLS(1)MVDLQDAR;SLS(1)MVDLQDAR;SLS(1)MVDLQDAR;SLS(1)MVDLQDAR ;;; 253.97 3.31E-27 641420000 991130 1179840 1057190 355341 1293270 1031310 1141310 1121420 891990 973930 TRUE FALSE FALSE 921656.9052 1086345.181 1466562.281 827251.8059 1131056.017 904077.4578 855742.1665 866097.1464 969308.4114 730051.5888 1.262454489 1.488038925 2.008847461 1.133141573 1.549282317 1.238374756 1.172166707 1.186350608 1.327725912 1 19.47763889 -6.177020209 1.223382735 1.175726058 1.533243365 0.303694094 0.226936004 0.588821414 1.815796493 0.109445449 0.106308536 6.65E-07 6.177020209 0.357517307 SLS(ph)NPDIASETLTLLSFLR ddPTM_HeLa_A486_30min_R1 1 SLSNPDIASETLTLLSFLR 19 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 SLS(1)NPDIASETLTLLSFLR 360.78 2.66E-116 775150000 63777 76450 47883 37428 88268 86428 91954 74529 72467 83582 TRUE FALSE FALSE 59306.56164 70391.82357 66424.57995 87134.27551 77196.60437 75765.3921 68946.13661 57560.37366 78748.49791 62652.52317 0.946594944 1.123527354 1.060205984 1.390754452 1.232138794 1.209295145 1.100452673 0.918723951 1.256908643 1 15.93508499 -6.987514199 13.002602 1.054612378 1.1668442 0.104625407 0.134287392 1.788479656 1854.715171 0.058220702 0.038881442 1.03E-07 6.987514199 0.112231823 SLS(ph)NSNPDISGTPTSPDDEVR ddPTM_HeLa_A486_30min_R1 1 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.131)LS(0.825)NS(0.043)NPDISGTPTSPDDEVR 133.21 8.58E-07 105570000 29478 32527 28744 9979.5 34345 32449 32148 32377 27022 35371 TRUE FALSE FALSE 27411.74442 29949.44206 39874.44659 23232.78034 30037.12985 28445.7723 24104.23037 25005.46388 29364.28872 26513.87137 1.033864276 1.12957635 1.50390888 0.876250021 1.132883592 1.072863781 0.909117723 0.943108742 1.107506644 1 14.69445972 -5.297350363 24.99999004 1.007631904 1.213162945 0.346896225 0.135931576 675.549559 470292.9188 0.038569498 0.057209589 5.04E-06 5.297350363 0.205531041 SLS(ph)PFR ddPTM_HeLa_A485_30min_R1 3 SLSPFR 6 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.003)LS(0.997)PFR;S(0.056)LS(0.944)PFR;S(0.016)LS(0.984)PFR ;; 109.01 0.0093093 3704850000 462569 618790 644010 472020 738890 547990 657590 726180 546340 576860 TRUE FALSE FALSE 565465.8782 691152.1077 882256.0985 497805.2574 665323.5172 576681.909 517090.5245 548083.2164 655985.4267 433059.4183 1.305746635 1.595975237 2.03726339 1.14950798 1.536333097 1.331646154 1.194040593 1.265607428 1.514770027 1 18.72420546 -5.29266302 24.99996967 1.304305962 1.641293402 0.352117859 0.223726967 758.4912136 607302.7976 0.062442768 0.092627312 5.10E-06 5.29266302 0.33698744 SLS(ph)PFR ddPTM_HeLa_A486_30min_R1 1 SLSPFR 6 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 S(0.006)LS(0.994)PFR 98.523 0.012677 333170000 142320 161370 133040 37118 170020 120600 136020 148480 113910 141070 TRUE FALSE FALSE 132344.1029 148582.4535 184556.6509 86412.57984 148694.5062 105721.5982 101986.3573 114674.3453 123783.8105 105745.1538 1.251538233 1.405099413 1.745296539 0.817177684 1.406159062 0.999777242 0.964454196 1.084440669 1.170586132 1 16.69023202 -5.263878222 24.99998583 1.074275677 1.461090191 0.503943824 0.18345926 179.7148026 1842219.061 0.05019091 0.078570508 5.45E-06 5.263878222 0.386814514 SLS(ph)PFRR ddPTM_HeLa_A485_30min_R1 6 SLSPFRR 7 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR ;;;;; 119.86 0.0012236 3873300000 854670 1230990 1259505 872551 1410680 1210580 1408590 1523630 1056541 1230540 TRUE FALSE FALSE 1044788.393 1374943.572 1725448.312 920216.2517 1270227.746 1273964.097 1107633.239 1149957.354 1268579.088 923789.0244 1.130981604 1.488374007 1.867794774 0.99613248 1.375019309 1.379063902 1.199011041 1.24482682 1.373234639 1 19.81720388 -13.09376223 0.133076228 0.07386809 1.497268247 0.182721878 0.221251612 181.1850872 1.896775279 46.47663365 1.679827897 8.06E-14 13.09376223 1.423400157 SLS(ph)PFRR ddPTM_HeLa_A486_30min_R1 5 SLSPFRR 7 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR;SLS(1)PFRR ;;;; 128 0.0010062 3022920000 728990 782840 687840 262091 927230 672880 783330 792750 631920 759270 TRUE FALSE FALSE 677891.5655 720804.9073 954190.069 610161.0933 810928.1673 589866.9069 587332.5488 612258.1306 686695.3344 569143.85 1.19107246 1.266472277 1.676535851 1.072068324 1.424821102 1.03641093 1.031957999 1.075752871 1.206540902 1 19.11843381 -6.269867354 24.86393346 1.072481174 1.328221473 0.400718638 0.156547466 620.5336966 1830672.638 0.054016311 0.048392757 5.37E-07 6.269867354 0.255740298 SLS(ph)PGAASSSSGDGDGKEGLEEPK ddPTM_HeLa_A485_30min_R1 1 SLSPGAASSSSGDGDGKEGLEEPK 24 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(0.148)LS(0.852)PGAASSSSGDGDGKEGLEEPK 163.39 2.87E-14 261940000 214990 116550 80548 478890 184550 184350 318000 199050 155040 673370 TRUE FALSE FALSE 262813.7838 130179.5086 110346.0571 505050.5481 166175.554 194002.2809 250056.7022 150232.6754 186155.1059 505511.2515 0.519897001 0.257520497 0.218286055 0.999088639 0.328727706 0.383774407 0.494661002 0.297189578 0.368251162 1 18.94738368 -10.16555124 4.792044737 1.000056545 0.428865766 0.397018259 0.210842702 420231035.9 29.98153791 265611.7204 0.05282115 6.83E-11 10.16555124 -0.57119078 SLS(ph)PGAASSSSGDGDGKEGLEEPKGPR ddPTM_HeLa_A485_30min_R1 2 SLSPGAASSSSGDGDGKEGLEEPKGPR 27 2 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(0.02)LS(0.974)PGAAS(0.004)S(0.001)SSGDGDGKEGLEEPKGPR;S(0.032)LS(0.967)PGAAS(0.001)SSSGDGDGKEGLEEPKGPR ; 205.45 8.54E-29 1811600000 702860 602840 333600 1010990 882400 916200 1521730 1662840 623430 1492380 TRUE FALSE FALSE 859208.7822 673336.894 457012.5223 1066217.824 794545.1577 964170.8153 1196599.954 1255025.883 748546.6826 1120357.131 0.766906157 0.601002016 0.407916824 0.951676741 0.709189182 0.860592385 1.068052249 1.120201628 0.668132207 1 20.09552726 -5.848291193 1.16367484 0.963377983 0.613029278 0.391123029 0.167130709 0.472737369 1.357867861 0.072953932 0.098034148 1.42E-06 5.848291193 -0.350348705 SLS(ph)PGAASSSSGDGDGKEGLEEPKGPR ddPTM_HeLa_A486_30min_R1 2 SLSPGAASSSSGDGDGKEGLEEPKGPR 27 2 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(0.057)LS(0.88)PGAAS(0.02)S(0.04)S(0.003)S(0.001)GDGDGKEGLEEPKGPR;S(0.001)LS(0.997)PGAAS(0.001)S(0.001)SSGDGDGKEGLEEPKGPR ; 124.99 4.09E-06 1035650000 372230 286612 146025 212502 341650 418640 594670 590590 231978 671000 TRUE FALSE FALSE 346138.5992 263899.8213 202569.7907 494715.3953 298797.0712 366992.4532 445877.2762 456125.5495 252086.0398 502977.2325 0.688179458 0.524675481 0.402741471 0.983574133 0.594056852 0.729640289 0.886476062 0.906851285 0.501187775 1 18.94013357 -5.25286814 24.9877555 0.788432655 0.537146478 0.344981684 0.164698445 736.3283588 2146614.684 0.043688348 0.074160286 5.59E-06 5.25286814 -0.251286177 SLS(ph)PGGAALGYR ddPTM_HeLa_A485_30min_R1 8 SLSPGGAALGYR 12 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 SLS(1)PGGAALGYR;SLS(1)PGGAALGYR;S(0.001)LS(0.999)PGGAALGYR;SLS(1)PGGAALGYR;S(0.004)LS(0.996)PGGAALGYR;SLS(1)PGGAALGYR;SLS(1)PGGAALGYR;S(0.005)LS(0.995)PGGAALGYR ;;;;;;; 280.21 7.37E-41 41283600000 10214330 14451450 14874430 10517490 16385520 13870690 15562240 17691920 11796370 14194740 TRUE FALSE FALSE 12486472.47 16141421.37 20377100.63 11092033.85 14754120.1 14596937.88 12237240.29 13352948.88 14163793.26 10656252.55 1.171750801 1.514737126 1.912220129 1.040894423 1.384550528 1.369800294 1.14836245 1.253062351 1.329153301 1 23.34519684 -7.611249817 0.253448841 0.951141579 1.525246124 0.219905515 0.221869335 3.133241828 0.828692215 0.698747219 0.593482971 2.45E-08 7.611249817 0.574104544 SLS(ph)PGGAALGYR ddPTM_HeLa_A486_30min_R1 8 SLSPGGAALGYR 12 0 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 SLS(1)PGGAALGYR;S(0.001)LS(0.999)PGGAALGYR;S(0.001)LS(0.999)PGGAALGYR;S(0.004)LS(0.996)PGGAALGYR;S(0.004)LS(0.996)PGGAALGYR;SLS(1)PGGAALGYR;S(0.005)LS(0.995)PGGAALGYR;SLS(1)PGGAALGYR ;;;;;;; 273.02 1.31E-40 38994020000 14546070 16040280 13273330 4316538 18062370 14403960 16009900 16231090 13417940 15431600 TRUE FALSE FALSE 13526465.61 14769189.8 18413118.85 10049118.61 15796819.13 12626945.86 12004053.68 12535625.13 14581017.84 11567426.92 1.169358208 1.276791278 1.591807666 0.868742779 1.365629473 1.091595041 1.037746231 1.083700396 1.260523879 1 23.46356465 -5.262802548 24.99944482 1.11260353 1.33906626 0.323137251 0.161705851 152.69907 2800405.167 0.043850952 0.069251108 5.46E-06 5.262802548 0.22646273 SLS(ph)PGVSR ddPTM_HeLa_A486_30min_R1 2 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLS(0.993)PGVS(0.007)R;SLS(1)PGVSR ; 164.66 3.43E-05 1614560000 1097960 1439210 1217340 401300 1518520 1333020 1382260 1426310 1219690 1301440 TRUE FALSE FALSE 1020998.674 1325161.758 1688726.649 934246.6806 1328053.062 1168565.546 1036403.928 1101570.349 1325413.711 975550.953 1.046586722 1.358372675 1.731049151 0.957660569 1.361336441 1.197851882 1.062378059 1.129177667 1.358630943 1 19.8958577 -5.291264823 24.9949616 1.164660481 1.376640191 0.212683409 0.198485581 1110.505177 930647.0508 0.05571027 0.082645328 5.11E-06 5.291264823 0.21197971 SLS(ph)PIIGK ddPTM_HeLa_A485_30min_R1 4 SLSPIIGK 8 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 SLS(1)PIIGK;S(0.001)LS(0.999)PIIGK;S(0.003)LS(0.997)PIIGK;SLS(1)PIIGK ;;; 160.75 4.17E-05 10771210000 7218600 6588500 5195390 8597900 7686800 6709500 9507500 8420700 6404700 11865700 TRUE FALSE FALSE 8824352.666 7358967.763 7117380.959 9067581.506 6921475.202 7060799.045 7476144.956 6355510.122 7690064.543 8907799.362 0.990632176 0.826126349 0.799005531 1.017937331 0.777012921 0.792653579 0.839280798 0.713477018 0.863295661 1 23.08663763 SLS(ph)PIIGK ddPTM_HeLa_A486_30min_R1 6 SLSPIIGK 8 0 Q9H4G0-3;A0A0C4DH22;Q9H4G0-2;Q9H4G0;A0A1B0GTW6;Q9H4G0-4;H7C2K6;X6RC15 Q9H4G0-3;Q9H4G0-4 EPB41L1 Band 4.1-like protein 1 1 0 S(0.001)LS(0.999)PIIGK;S(0.003)LS(0.997)PIIGK;S(0.01)LS(0.99)PIIGK;SLS(1)PIIGK;SLS(1)PIIGK;SLS(1)PIIGK ;;;;; 177.06 1.12E-05 13634557000 8615990 9326420 6005610 3336870 9193110 8986690 10610250 9678860 7914450 10439230 TRUE FALSE FALSE 8012053.594 8587360.513 8331143.028 7768401.996 8040024.421 7878003.558 7955453.226 7475194.866 8600480.898 7825178.86 1.023881209 1.09740118 1.06465848 0.992744337 1.027455674 1.006750606 1.016648101 0.955274633 1.099077868 1 22.8996923 -5.245964635 23.03723496 1.01249928 1.065522403 0.250075406 0.037870765 356.3520515 530496.6837 0.009640211 0.016595504 5.68E-06 5.245964635 0.053023123 SLS(ph)PILPGR ddPTM_HeLa_A485_30min_R1 4 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 S(0.175)LS(0.825)PILPGR;S(0.032)LS(0.968)PILPGR;SLS(1)PILPGR;S(0.081)LS(0.919)PILPGR ;;; 215.72 6.54E-12 1631300000 1042550 1247300 1221370 1417270 1371110 1280650 1472540 1571950 1063030 1366980 TRUE FALSE FALSE 1274461.651 1393160.885 1673205.588 1494691.871 1234597.474 1347702.854 1157919.799 1186426.798 1276370.37 1026217.043 1.241902635 1.357569428 1.630459754 1.456506575 1.20305688 1.313272726 1.12833811 1.156116833 1.243762592 1 19.96890446 -6.126942897 1.499637168 1.155032532 1.425994277 0.497574534 0.119884365 0.360024282 1.631763178 0.053181871 0.053574843 7.47E-07 6.126942897 0.270961745 SLS(ph)PILPGR ddPTM_HeLa_A486_30min_R1 2 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 S(0.332)LS(0.668)PILPGR;S(0.049)LS(0.951)PILPGR ; 134.59 0.0001966 899900000 672220 725680 609850 1150233 788070 743870 788910 766010 597480 826430 TRUE FALSE FALSE 625100.8493 668174.4739 846000.2523 2677800.554 689222.9121 652098.8825 591516.3738 591606.2449 649270.0475 619486.5488 1.009062829 1.078593999 1.365647493 4.32261291 1.112571231 1.052644135 0.954849423 0.954994497 1.048077716 1 19.24071343 -5.964202384 24.99978958 1.005925163 1.950447839 0.21242872 0.873194749 297.7167395 207913.6365 0.286921776 0.325337763 1.09E-06 5.964202384 0.944522675 SLS(ph)PLIK ddPTM_HeLa_A485_30min_R1 5 SLSPLIK 7 0 Q5VY60;Q7Z4H7-3;Q7Z4H7 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 SLS(1)PLIK;SLS(1)PLIK;SLS(1)PLIK;SLS(1)PLIK;SLS(1)PLIK ;;;; 122.44 0.0018409 1006340000 1627640 1679960 1303500 2044660 2140040 1803570 2587130 2689020 1585030 2803620 TRUE FALSE FALSE 1989702.903 1876416.708 1785718.893 2156354.598 1926970.103 1898002.136 2034368.541 2029533.629 1903130.982 2104729.131 0.945348679 0.891524083 0.84843169 1.024528319 0.915543038 0.901779763 0.96657024 0.964273074 0.904216583 1 21.00520315 -14 0.097556294 1.219883555 0.880164265 0.178809023 0.046207185 335.7588555 2.236547263 15.18421338 0.85734294 1.00E-14 14 -0.33971929 SLS(ph)PLIK ddPTM_HeLa_A486_30min_R1 4 SLSPLIK 7 0 Q5VY60;Q7Z4H7-3;Q7Z4H7 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 SLS(1)PLIK;SLS(1)PLIK;SLS(1)PLIK;SLS(1)PLIK ;;; 164.96 0.00040138 848205000 2979300 2907020 1647910 1172805 2770060 2958930 3339650 3350920 2258200 3835770 TRUE FALSE FALSE 2770466.455 2676657.148 2286024.885 2730349.31 2422613.245 2593887.301 2504034.247 2587988.666 2453942.594 2875268.225 0.963550611 0.930924331 0.795064914 0.949598123 0.842569477 0.902137504 0.870887184 0.900085997 0.853465625 1 21.45526512 -10.16473157 4.771727816 1.000011502 0.888709377 0.31392666 0.048845084 5.72E-06 1.00E-06 0.045276053 0.010979921 6.84E-11 10.16473157 -0.111302125 SLS(ph)PNHNTLQTLK ddPTM_HeLa_A485_30min_R1 5 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.311)LS(0.689)PNHNTLQTLK;S(0.047)LS(0.953)PNHNTLQTLK;S(0.125)LS(0.875)PNHNTLQTLK;S(0.022)LS(0.945)PNHNT(0.033)LQTLK;S(0.058)LS(0.942)PNHNTLQTLK ;;;; 224.86 1.17E-27 4555850000 5096170 6543800 5603110 3676700 8391240 6082940 8300300 8781100 5961600 6860290 TRUE FALSE FALSE 6229795.435 7309040.487 7675933.554 3877548.811 7555778.682 6401433.332 6526873.098 6627521.457 7158038.437 5150145.957 1.209634734 1.419190941 1.490430294 0.752900761 1.467099912 1.242961537 1.267318082 1.286860899 1.389870985 1 22.29618189 -10.18714646 4.315431637 0.999913167 1.279575496 0.152144679 0.198772385 0.000161548 3.04E-05 0.187230558 0.045396016 6.50E-11 10.18714646 0.279662329 SLS(ph)PNHNTLQTLK ddPTM_HeLa_A486_30min_R1 5 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.012)LS(0.988)PNHNTLQTLK;S(0.004)LS(0.996)PNHNTLQTLK;S(0.07)LS(0.93)PNHNTLQTLK;S(0.005)LS(0.992)PNHNT(0.003)LQTLK;S(0.052)LS(0.948)PNHNTLQTLK ;;;; 248.75 1.36E-35 3659510000 5693270 5855090 4491970 449641 6405090 4898780 5798280 5742920 5213830 3961230 TRUE FALSE FALSE 5294201.173 5391111.345 6231381.083 1046786.972 5601703.887 4294418.331 4347489.016 4435382.483 5665768.982 2969312.225 1.782972208 1.815609453 2.098594089 0.352535164 1.886532457 1.446267016 1.464140073 1.493740687 1.908108193 1 21.50169737 SLS(ph)PPQSQSK ddPTM_HeLa_A485_30min_R1 3 SLSPPQSQSK 10 0 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L0Y9;I3L3C6 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 SLS(1)PPQSQSK;SLS(1)PPQSQSK;SLS(1)PPQSQSK ;; 152.96 2.54E-06 0 1320640 1337430 1013440 1572890 1697720 1461650 2033790 1987330 1255350 2200130 TRUE FALSE FALSE 1614411.812 1493830.804 1388353.629 1658812.998 1528689.036 1538179.734 1599254.152 1499934.201 1507287.23 1651678.081 0.977437329 0.904432178 0.840571564 1.004319799 0.925536915 0.931283009 0.968260202 0.908127448 0.912579302 1 20.6555011 -5.268329657 24.99219053 0.945146979 0.907175539 0.157512916 0.044082535 1105.639013 4010343.855 0.012327156 0.018784749 5.39E-06 5.268329657 -0.03797144 SLS(ph)PPQSQSK ddPTM_HeLa_A486_30min_R1 3 SLSPPQSQSK 10 0 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L0Y9;I3L3C6 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 S(0.002)LS(0.997)PPQS(0.001)QSK;SLS(0.999)PPQS(0.001)QSK;SLS(1)PPQSQSK ;; 123.84 0.00023694 370510000 1445140 1655770 1013100 631070 1704340 1630560 2144210 2019940 1273760 1916970 TRUE FALSE FALSE 1343843.149 1524560.755 1405399.452 1469162.853 1490565.785 1429398.086 1607705.979 1560043.757 1384170.542 1436948.235 0.935206374 1.060971243 0.978044593 1.022418774 1.037313488 0.994745706 1.118833609 1.085664549 0.963270986 1 20.45457666 -4.250302199 24.19378328 1.031900298 0.935206285 0.268141664 0.046282643 1451.596976 3153275.164 0.011640854 0.167460648 5.62E-05 4.250302199 -0.096694013 SLS(ph)PQEDALTGSR ddPTM_HeLa_A485_30min_R1 2 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 SLS(1)PQEDALTGSR;S(0.026)LS(0.974)PQEDALTGSR ; 211.09 5.54E-22 887920000 429060 521990 515370 451510 748190 396792 687980 551410 477460 993700 TRUE FALSE FALSE 524502.9168 583032.1898 706026.8093 476174.848 673697.5765 417567.4156 540987.4527 416175.8329 573281.8425 745988.8777 0.703097502 0.781556143 0.946430745 0.638313603 0.903093326 0.559750189 0.725195065 0.557884769 0.768485777 1 19.5087946 -4.223912738 20.20098004 0.749149869 0.703096397 0.005941153 0.145698749 10374.35488 5583274.012 0.035082702 4.640479035 5.97E-05 4.223912738 -0.046053472 SLS(ph)PQEDALTGSR ddPTM_HeLa_A486_30min_R1 1 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 S(0.001)LS(0.999)PQEDALTGSR 153.39 4.12E-08 826840000 398670 522570 439190 144620 520770 431530 479390 465190 498170 513490 TRUE FALSE FALSE 370725.2917 481159.65 609256.1299 336682.6687 455450.1706 378292.2161 359441.5515 359276.392 541351.7767 384908.7617 0.963151086 1.250061567 1.582858564 0.874707729 1.18326787 0.982810093 0.933835722 0.933406635 1.406441813 1 18.55415699 -5.290627869 24.99985526 1.040697097 1.263827778 0.202250474 0.200490049 1082.33973 927018.3724 0.056223848 0.083409044 5.12E-06 5.290627869 0.22313068 SLS(ph)PSHLTEDR ddPTM_HeLa_A485_30min_R1 5 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.004)LS(0.996)PSHLTEDR;SLS(1)PSHLTEDR;S(0.002)LS(0.998)PSHLTEDR;S(0.096)LS(0.903)PS(0.001)HLTEDR;S(0.083)LS(0.904)PS(0.013)HLTEDR ;;;; 260.77 1.98E-27 7638860000 1746260 2803980 2924320 1514270 3149510 2595630 2848630 3378520 2472390 2192000 TRUE FALSE FALSE 2134709.512 3131881.07 4006147.659 1596990.736 2835933.726 2731533.173 2239996.929 2549932.673 2968575.995 1645574.741 1.297242513 1.903214112 2.43449754 0.970475966 1.723369748 1.659926532 1.361224667 1.549569649 1.803975183 1 20.65016012 -11.72521808 0.233248628 1.12E-13 1.728590138 0.196355974 0.37474577 82.20666483 2.116663595 42.88478835 0.679115081 1.88E-12 11.72521808 1.728590138 SLS(ph)PSHLTEDR ddPTM_HeLa_A486_30min_R1 5 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 SLS(1)PSHLTEDR;S(0.115)LS(0.883)PS(0.002)HLTEDR;S(0.015)LS(0.982)PS(0.002)HLTEDR;S(0.097)LS(0.903)PSHLTEDR;S(0.122)LS(0.877)PSHLTEDR ;;;; 246.63 2.97E-22 10942070000 2628080 2886180 2762480 359101 3528940 2349410 2772900 2736940 2504280 2210630 TRUE FALSE FALSE 2443865.163 2657468.586 3832186.238 836005.276 3086307.439 2059563.681 2079091.091 2113798.509 2721353.007 1657073.859 1.474807625 1.603711609 2.312622468 0.504506948 1.862504451 1.242891902 1.254676175 1.275621178 1.642264158 1 20.66020648 -5.241568397 24.99991508 1.290961906 1.777713538 0.279590747 0.395634159 1171.898588 1474377.345 0.102564485 0.17734617 5.73E-06 5.241568397 0.486751633 SLS(ph)PSVR ddPTM_HeLa_A485_30min_R1 1 SLSPSVR 7 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.017)LS(0.972)PS(0.011)VR 123.21 0.0017906 644360000 142950 219910 200170 140680 250260 203740 212580 225580 181230 177100 TRUE FALSE FALSE 174748.7343 245626.5615 274221.2128 148364.9922 225343.2357 214407.5114 167160.5464 170256.1513 217601.1987 132952.2293 1.314372352 1.847479827 2.062554455 1.115927074 1.694918821 1.612665786 1.257297808 1.280581395 1.636687101 1 17.02054844 -9.820850294 0.15460235 0.481678014 1.825792341 0.277214993 0.27449323 31.0966971 1.097219145 8.700190349 1.818575788 1.51E-10 9.820850294 1.344114328 SLS(ph)PSVR ddPTM_HeLa_A486_30min_R1 4 SLSPSVR 7 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.002)LS(0.986)PS(0.012)VR;S(0.013)LS(0.711)PS(0.276)VR;S(0.001)LS(0.935)PS(0.065)VR;S(0.001)LS(0.994)PS(0.004)VR ;;; 141.93 0.00058958 2068330000 1170790 1388080 1315340 391016 1593350 1109060 1210490 1260400 1109320 1139490 TRUE FALSE FALSE 1088723.667 1278083.485 1824674.874 910305.0089 1393497.186 972235.4533 907612.5987 973434.4343 1205476.751 854154.2872 1.274621791 1.496314547 2.136235691 1.065738383 1.631434984 1.138243369 1.062586247 1.139647074 1.411310309 1 19.70413716 -6.109271899 1.532215151 1.149965576 1.562665379 0.279246064 0.281719623 0.521773061 2.468032633 0.117569893 0.120045829 7.78E-07 6.109271899 0.412699803 SLS(ph)PVAAPPLR ddPTM_HeLa_A485_30min_R1 2 SLSPVAAPPLR 11 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 S(0.004)LS(0.996)PVAAPPLR;SLS(1)PVAAPPLR ; 113.42 0.00041905 0 236650 279160 282640 276930 333020 219740 266950 228370 238620 332140 TRUE FALSE FALSE 289291.9761 311805.3336 387200.2976 292057.9847 299863.3595 231245.2466 209913.9517 172361.8994 286508.8452 249343.6106 1.160214113 1.250504606 1.552878362 1.171307273 1.202610962 0.927415971 0.841866175 0.691262547 1.149052284 1 17.92777571 -6.14027841 2.089079895 0.890052919 1.302338344 0.574112461 0.149187546 0.222711461 1.914765085 0.05701037 0.056879765 7.24E-07 6.14027841 0.412285425 SLS(ph)PVAAPPLR ddPTM_HeLa_A486_30min_R1 2 SLSPVAAPPLR 11 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 SLS(1)PVAAPPLR;S(0.001)LS(0.999)PVAAPPLR ; 160.72 8.01E-07 0 300300 377190 308470 104703 376830 328720 352420 314630 337970 336950 TRUE FALSE FALSE 279250.5208 347300.0907 427917.8451 243753.8754 329564.4676 288165.8686 264240.7885 242995.6173 367265.5117 252575.5268 1.10561195 1.375034609 1.694217371 0.965073214 1.304815521 1.1409097 1.046185241 0.96207111 1.454081939 1 17.94635533 -5.282409009 24.98897118 1.128057999 1.389962725 0.277839868 0.197120999 1030.335353 1227822.204 0.054867392 0.081475492 5.22E-06 5.282409009 0.261904726 SLS(ph)PVAAPPLREPR ddPTM_HeLa_A485_30min_R1 5 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 S(0.037)LS(0.963)PVAAPPLREPR;S(0.056)LS(0.944)PVAAPPLREPR;S(0.032)LS(0.968)PVAAPPLREPR;S(0.022)LS(0.978)PVAAPPLREPR;S(0.012)LS(0.988)PVAAPPLREPR ;;;; 130.4 9.64E-06 8652280000 3601080 4988920 4954270 3628890 5525570 4667480 5472270 5795800 4199360 4760240 TRUE FALSE FALSE 4402127.822 5572330.796 6787060.637 3827127.072 4975424.849 4911862.036 4303074.81 4374370.963 5042133.033 3573599.774 1.231846905 1.559304664 1.899222372 1.070944514 1.392272544 1.37448577 1.204128913 1.224079707 1.410939487 1 21.76894664 -8.21190001 0.15582907 0.783773392 1.65453968 0.255303404 0.211602045 10.63694884 1.017626595 3.055130117 1.853316044 6.14E-09 8.21190001 0.870766289 SLS(ph)PVAAPPLREPR ddPTM_HeLa_A486_30min_R1 6 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 S(0.042)LS(0.958)PVAAPPLREPR;S(0.036)LS(0.964)PVAAPPLREPR;S(0.013)LS(0.987)PVAAPPLREPR;S(0.047)LS(0.953)PVAAPPLREPR;S(0.045)LS(0.955)PVAAPPLREPR;S(0.131)LS(0.869)PVAAPPLREPR ;;;;; 132.25 8.03E-06 8753280000 4755510 4994860 4328880 1578002 5458930 4298170 4776900 5100070 4135000 4529310 TRUE FALSE FALSE 4422173.306 4599049.103 6005138.267 3673668.404 4774220.097 3767905.486 3581669.095 3938895.395 4493425.129 3395141.295 1.302500521 1.354597262 1.768744728 1.082036971 1.406191873 1.109793425 1.054939628 1.160156545 1.32348693 1 21.69504019 -5.718115616 1.532474362 1.14700102 1.442576263 0.332245717 0.176909342 0.459099769 2.237789285 0.064027685 0.090879824 1.91E-06 5.718115616 0.295575243 SLS(ph)RS(ph)PLPSR ddPTM_HeLa_A486_30min_R1 1 SLSRSPLPSR 10 1 Q9NYV4;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.393)LS(0.619)RS(0.988)PLPS(0.001)R 59.294 0.0041083 0 169050 214480 164920 63181 213620 182830 190320 191770 159220 167640 TRUE FALSE FALSE 157200.468 197483.8237 228781.4407 147088.561 186825.7877 160274.2935 142699.923 148108.1573 173021.3178 125661.8528 1.250980026 1.571549513 1.820611709 1.17051084 1.486734307 1.275441113 1.135586654 1.17862465 1.376880206 1 16.93918723 -6.096985245 1.116694824 1.182309238 1.514712869 0.343708961 0.186497633 0.568309222 1.491040156 0.092222135 0.097283109 8.00E-07 6.096985245 0.332403631 SLS(ph)SGHLQGKPWK ddPTM_HeLa_A486_30min_R1 1 SLSSGHLQGKPWK 13 1 Q9BYV8-5;Q9BYV8-2;Q9BYV8 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 1 0 S(0.014)LS(0.973)S(0.014)GHLQGKPWK 95.347 0.00057651 154280000 125050 105130 75133 32280 134810 154300 165570 163090 103520 133770 TRUE FALSE FALSE 116284.6408 96799.11592 104226.5097 75149.47134 117900.8727 135264.0348 124142.6348 125957.9672 112493.197 100273.1213 1.159679077 0.96535457 1.039426203 0.749447812 1.175797374 1.348956062 1.238044983 1.256148862 1.121867909 1 16.61357541 -5.973062745 24.99723152 1.21744453 0.97948418 0.388645957 0.128380031 199.7934827 185403.4522 0.038755101 0.043943094 1.06E-06 5.973062745 -0.23796035 SLS(ph)SPPSSK ddPTM_HeLa_A485_30min_R1 3 SLSSPPSSK 9 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 SLS(0.5)S(0.5)PPSSK;SLS(0.625)S(0.366)PPS(0.008)SK;SLS(0.5)S(0.5)PPSSK ;; 134.57 0.00019687 1177910000 1829130 2018390 1730880 2340140 2786210 2332750 2981840 3340790 2069690 2753930 TRUE FALSE FALSE 2236013.658 2254423.153 2371204.54 2467975.923 2508805.149 2454889.183 2344745.525 2521456.014 2485057.799 2067425.933 1.081544747 1.090449296 1.146935666 1.193743332 1.213492154 1.187413364 1.134137619 1.219611292 1.202005721 1 20.97940421 -4.847327864 3.035357671 1.175114359 1.082913509 0.190367487 0.060890445 0.326235322 5.950411134 0.01543037 0.040248183 1.42E-05 4.847327864 -0.09220085 SLS(ph)SPPSSK ddPTM_HeLa_A486_30min_R1 3 SLSSPPSSK 9 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 S(0.001)LS(0.972)S(0.027)PPSSK;SLS(0.5)S(0.5)PPS(0.001)SK;SLS(0.499)S(0.499)PPS(0.001)SK ;; 139.78 0.00014057 1464640000 1556040 1834170 1381790 775870 2402660 2171090 2555190 2573990 1836740 2689150 TRUE FALSE FALSE 1446969.631 1688823.689 1916856.094 1806264.57 2101295.979 1903242.99 1915854.436 1987948.667 1995950.102 2015769.337 0.717825004 0.837806022 0.950930277 0.896067093 1.042428784 0.944176973 0.950433366 0.986198485 0.990167906 1 20.94289913 -3.936229499 0.859784439 0.979214732 0.413982639 0.845660231 0.035142719 1.319765046 0.521318201 0.012030056 0.801597276 0.000115817 3.936229499 -0.565232093 SLS(ph)SPTDNLELS(ph)LR ddPTM_HeLa_A486_30min_R1 1 SLSSPTDNLELSLR 14 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 S(0.024)LS(0.488)S(0.488)PT(0.001)DNLELS(1)LR 101.67 0.0012087 14569000 57163 65684 42472 21143 53379 52394 57453 56062 53695 67933 TRUE FALSE FALSE 53156.16889 60478.96062 58918.29584 49221.97251 46683.70808 45930.16098 43077.65172 43297.90642 58349.32583 50922.13463 1.043871575 1.187675282 1.157027219 0.966612513 0.916766519 0.901968492 0.845951413 0.850276736 1.145853886 1 15.63600528 -5.339940892 4.358435811 0.93033336 1.135510668 0.470179349 0.088207495 0.177255217 6.260621687 0.025279443 0.038897704 4.57E-06 5.339940892 0.205177308 SLS(ph)SPTVTLSAPLEGAK ddPTM_HeLa_A485_30min_R1 1 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.032)LS(0.935)S(0.032)PTVTLSAPLEGAK 132.81 1.01E-05 171400000 54202 47275 32785 78541 61469 64481 99516 99900 43624 118910 TRUE FALSE FALSE 66259.04791 52803.40001 44913.5358 82831.49595 55348.93053 67857.12545 78253.59363 75399.36836 52378.93666 89267.92538 0.742249219 0.591515931 0.503131843 0.927897625 0.620031554 0.760151254 0.876614902 0.844641208 0.586760994 1 16.44585428 -13.9999998 0.075640993 1.88955635 0.427351504 0.297985309 0.132127033 341.5214632 1.839283582 52.2291799 5.516263627 1.00E-14 13.9999998 -1.462204846 SLS(ph)SPTVTLSAPLEGAK ddPTM_HeLa_A486_30min_R1 2 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.101)LS(0.45)S(0.45)PTVTLSAPLEGAK;SLS(0.5)S(0.5)PTVTLSAPLEGAK ; 355.06 1.92E-105 825140000 996680 950640 686630 407447 1116300 1104970 1269680 1298510 1005590 1414700 TRUE FALSE FALSE 926817.8789 875307.8242 952511.5246 948557.2072 976283.2449 968650.0359 951992.6347 1002867.619 1092755.351 1060449.912 0.873985531 0.825411756 0.898214535 0.89448563 0.920631172 0.913433086 0.897725224 0.94570013 1.030463899 1 20.01624505 -7.004675129 0.470232703 1.017203463 0.857555137 0.750170367 0.028271237 0.509075079 0.258693875 0.030603356 0.025502258 9.89E-08 7.004675129 -0.159648326 SLS(ph)SS(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_A486_30min_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 2 0 S(0.142)LS(0.858)S(0.123)S(0.877)PQAQPPRPAELSDEEVAELFQR 116.13 0.00023365 545740000 51554 59925 48406 22301 71760 63332 69447 76154 54893 66885 TRUE FALSE FALSE 47940.33083 55176.32476 67150.09956 51917.85503 62759.19166 55518.74175 52070.62606 58815.39663 59651.16944 50136.56065 0.956195044 1.100520739 1.339343957 1.035528851 1.251764996 1.107350425 1.038575949 1.173103936 1.189773863 1 15.61357541 -9.112636594 14.35920232 0.999995134 1.135960651 0.121851318 0.106306836 0 0 0.101134556 0.024528733 7.72E-10 9.112636594 0.135965517 SLS(ph)TNGENMGLAVQYLDPR ddPTM_HeLa_A486_30min_R1 1 SLSTNGENMGLAVQYLDPR 19 0 J3KRN4;J3QRB6;Q99759;Q99759-2 J3KRN4 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 1 0 S(0.155)LS(0.673)T(0.172)NGENMGLAVQYLDPR 53.453 0.033802 71947000 26088 29140 19794 9954.1 29460 18941 23830 24515 24426 24703 TRUE FALSE FALSE 24259.36592 26830.84027 27458.7669 23173.64785 25764.8521 16604.252 17867.48195 18933.46966 26543.26535 18517.20801 1.310098472 1.448967915 1.482878352 1.251465547 1.391400479 0.896693065 0.96491231 1.02247972 1.433437769 1 14.17657897 -6.243571662 24.71777728 1.058747542 1.379874705 0.530679129 0.147343212 580.2205277 802663.6252 0.049819302 0.049713357 5.71E-07 6.243571662 0.321127163 SLS(ph)TSGESLYHVLGLDK ddPTM_HeLa_A485_30min_R1 4 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 SLS(0.964)T(0.035)S(0.001)GESLYHVLGLDK;S(0.002)LS(0.853)T(0.135)S(0.01)GESLYHVLGLDK;S(0.003)LS(0.907)T(0.042)S(0.041)GES(0.006)LYHVLGLDK;S(0.097)LS(0.895)T(0.007)S(0.001)GESLYHVLGLDK ;;; 297.5 1.28E-68 33371780000 4885960 4508440 3265050 3854880 4478570 4205290 6682100 5165830 4554440 9200680 TRUE FALSE FALSE 5972824.946 5035662.84 4472927.865 4065462.333 4032667.846 4425472.482 5254414.747 3898902.093 5468474.332 6907119.802 0.864734523 0.72905393 0.647582204 0.5885901 0.583842175 0.640711702 0.760724426 0.564475817 0.791715576 1 22.71965282 -8.032646169 7.119892098 0.999985987 0.669932778 0.571100261 0.087295656 0.213323681 43.44056781 0.087302278 0.022603154 9.28E-09 8.032646169 -0.330053209 SLS(ph)TSGESLYHVLGLDK ddPTM_HeLa_A486_30min_R1 4 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 SLS(0.496)T(0.496)S(0.007)GES(0.001)LYHVLGLDK;S(0.144)LS(0.587)T(0.101)S(0.147)GES(0.021)LYHVLGLDK;S(0.005)LS(0.843)T(0.112)S(0.034)GES(0.007)LYHVLGLDK;S(0.003)LS(0.855)T(0.139)S(0.002)GES(0.001)LYHVLGLDK ;;; 288.53 1.04E-60 9060967000 3802840 3724760 3036310 271779 4477650 4072310 4309710 3760970 4791610 3528560 TRUE FALSE FALSE 3536280.554 3429596.452 4212050.547 632715.247 3916021.385 3569909.796 3231374.975 2904679.232 5206950.613 2644985.609 1.336975348 1.296640874 1.592466338 0.239213115 1.480545441 1.349689686 1.221698509 1.098183379 1.968612077 1 21.33482844 SLS(ph)TSGESLYHVLGLDKNATSDDIKK ddPTM_HeLa_A485_30min_R1 2 SLSTSGESLYHVLGLDKNATSDDIKK 26 2 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.027)LS(0.837)T(0.132)S(0.004)GESLYHVLGLDKNATSDDIKK;SLS(0.459)T(0.459)S(0.062)GES(0.02)LYHVLGLDKNATSDDIKK ; 217.07 2.01E-38 3598900000 561500 758060 219428 368300 573720 1096020 1849720 2836190 397410 851030 TRUE FALSE FALSE 686403.7378 846708.5228 300603.5484 388419.2964 516598.4223 1153405.912 1454512.211 2140609.956 477166.5417 638883.883 1.074379486 1.325293289 0.470513588 0.607965401 0.808595171 1.805345139 2.276645647 3.350546183 0.746875222 1 19.28519422 -6.32907113 4.088862253 2.036415236 0.844814197 0.308122096 0.708154952 0.242852419 8.022198942 0.252992647 0.224433309 4.69E-07 6.32907113 -1.19160104 SLS(ph)VEHLETK ddPTM_HeLa_A485_30min_R1 1 SLSVEHLETK 10 0 J3KN34;P26045-2;P26045 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 0 S(0.193)LS(0.807)VEHLETK 142.91 2.70E-05 0 225120 215410 168990 269760 286670 267230 333180 380430 226930 433330 TRUE FALSE FALSE 275197.1673 240600.3257 231506.4333 284496.3057 258128.1282 281221.7496 261993.3712 287128.946 272472.7695 325308.8058 0.845956711 0.739605942 0.711651296 0.874542283 0.793486446 0.86447629 0.805368212 0.882635025 0.837581905 1 18.31145035 -13.999999 0.116583358 1.62918944 0.71658426 0.602982013 0.048384787 103.5986641 0.788702385 15.24374296 0.504176878 1.00E-14 13.999999 -0.91260518 SLS(ph)VPDSGR ddPTM_HeLa_A485_30min_R1 1 SLSVPDSGR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.013)LS(0.986)VPDSGR 62.633 0.026396 219120000 131170 164610 116230 100920 192400 133480 150640 169220 138850 190270 TRUE FALSE FALSE 160348.314 183859.7076 159228.3137 106433.0041 173243.9804 140468.8064 118454.5334 127718.5297 166715.9214 142839.1907 1.122579267 1.287179707 1.11473828 0.745124665 1.212860278 0.983405225 0.829285946 0.89414207 1.167158121 1 17.12403234 -5.008398671 24.28412149 0.972134047 1.203899437 0.319139589 0.137279722 299.7670202 866766.7152 0.03587087 0.069335857 9.81E-06 5.008398671 0.231765391 SLS(ph)VPDSGR ddPTM_HeLa_A486_30min_R1 2 SLSVPDSGR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.004)LS(0.996)VPDSGR;S(0.023)LS(0.977)VPDSGR ; 84.882 0.0049261 146690000 329250 357090 296620 107997 476090 425000 423000 492220 328720 396650 TRUE FALSE FALSE 306171.2752 328792.8879 411479.2078 251422.4739 416374.3528 372567.8211 317160.926 380152.2511 357213.7143 297326.2582 1.029748523 1.10583199 1.383931612 0.845611401 1.400395496 1.253060605 1.066710111 1.278569385 1.201420004 1 18.18168735 -4.529110272 24.93226383 1.187440211 1.048769293 0.075743668 0.162383231 306.8362288 1227652.53 0.039103678 0.104052349 2.96E-05 4.529110272 -0.138670917 SLS(ph)VPVDLSR ddPTM_HeLa_A485_30min_R1 6 SLSVPVDLSR 10 0 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 0 SLS(1)VPVDLSR;S(0.002)LS(0.998)VPVDLSR;SLS(1)VPVDLSR;SLS(1)VPVDLSR;S(0.001)LS(0.999)VPVDLSR;S(0.001)LS(0.999)VPVDLSR ;;;;; 223.96 4.41E-17 2215170000 1555600 1748110 1913720 1674500 2322690 2019290 2536460 2818160 1662730 2155210 TRUE FALSE FALSE 1901637.853 1952536.258 2621684.665 1765973.695 2091434.828 2125016.902 1994524.6 2127001.841 1996424.66 1617955.811 1.175333616 1.20679208 1.620368521 1.091484504 1.292640265 1.313396131 1.232743556 1.31462295 1.233917914 1 20.62574078 -8.140882604 4.792755371 1.000006 1.283052474 0.289638613 0.131323755 1.663919575 55.38081031 0.123101333 0.032114293 7.23E-09 8.140882604 0.283046475 SLS(ph)VPVDLSR ddPTM_HeLa_A486_30min_R1 4 SLSVPVDLSR 10 0 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 0 SLS(1)VPVDLSR;SLS(1)VPVDLSR;SLS(1)VPVDLSR;S(0.017)LS(0.983)VPVDLSR ;;; 220.5 5.94E-17 1710520000 1281490 1716580 1582110 590240 2079930 1758040 2013070 1891410 1556280 1644080 TRUE FALSE FALSE 1191664.169 1580551.949 2194745.362 1374108.549 1819045.785 1541150.899 1509378.594 1460777.232 1691179.603 1232391.667 0.966952472 1.282507819 1.780882995 1.114993379 1.476028956 1.250536612 1.224755599 1.185318979 1.372274455 1 20.2330294 -6.505270906 22.21196321 1.214832615 1.338452341 0.067470519 0.218554013 538.108161 678817.9878 0.078087144 0.06721187 3.12E-07 6.505270906 0.123619726 SLS(ph)YEEPR ddPTM_HeLa_A485_30min_R1 3 SLSYEEPR 8 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 SLS(1)YEEPR;S(0.018)LS(0.982)YEEPR;S(0.032)LS(0.967)Y(0.001)EEPR ;; 151.22 0.00021581 1703598000 1771150 2191030 2038020 1924080 2713120 2070850 2662540 2770460 2177320 2457290 TRUE FALSE FALSE 2165136.207 2447251.899 2791968.407 2029187.618 2442992.246 2179276.504 2093666.578 2091000.341 2614288.152 1844732.826 1.17368552 1.3266159 1.513481176 1.099989977 1.324306811 1.181350748 1.134942984 1.13349766 1.417163567 1 20.81498045 -5.284457301 24.99576184 1.193660567 1.336796436 0.214956251 0.133583619 1235.0618 1341182.611 0.036761686 0.054564294 5.19E-06 5.284457301 0.143135869 SLS(ph)YEEPR ddPTM_HeLa_A486_30min_R1 3 SLSYEEPR 8 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 S(0.041)LS(0.958)YEEPR;S(0.006)LS(0.994)YEEPR;S(0.062)LS(0.936)Y(0.002)EEPR ;; 121.8 0.00069367 1547570000 1928250 2158320 1804580 783858 2468390 2164660 2411560 2743540 1872340 2478570 TRUE FALSE FALSE 1793089.632 1987286.863 2503361.704 1824861.038 2158781.509 1897606.258 1808162.181 2118895.833 2034635.939 1857919.939 0.965105974 1.069629977 1.347400204 0.982206498 1.161934626 1.021360618 0.973218567 1.140466706 1.09511497 1 20.8252569 -6.276104645 24.249874 1.050260494 1.1098927 0.068015595 0.108375317 1751.873025 2896812.922 0.038709302 0.034312408 5.30E-07 6.276104645 0.059632206 SLS(ph)YS(ph)PVER ddPTM_HeLa_A485_30min_R1 4 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SLS(0.981)Y(0.03)S(0.989)PVER;SLS(0.996)Y(0.006)S(0.998)PVER;S(0.001)LS(0.813)Y(0.199)S(0.987)PVER;S(0.001)LS(0.799)Y(0.202)S(0.999)PVER ;;; 190.36 3.19E-08 8647030000 7109830 9228960 8602710 7654520 11091800 8461600 10403600 11301700 8059650 9807890 TRUE FALSE FALSE 8691387.155 10308206.59 11785210.42 8072667.045 9987461.446 8904636.292 8180785.87 8529940.355 9677147.828 7362963.524 1.180419695 1.400007831 1.600606927 1.096388298 1.356445868 1.2093821 1.111072443 1.158492817 1.314300661 1 22.81185512 -5.968454174 1.11881139 1.159233152 1.368201221 0.254347893 0.144653998 0.701035807 1.862873353 0.067442822 0.080813464 1.08E-06 5.968454174 0.208968069 SLS(ph)YS(ph)PVER ddPTM_HeLa_A486_30min_R1 6 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.005)LS(0.736)Y(0.269)S(0.99)PVER;S(0.001)LS(0.993)Y(0.008)S(0.997)PVER;SLS(0.998)Y(0.013)S(0.989)PVER;SLS(0.94)Y(0.061)S(0.999)PVER;S(0.002)LS(0.926)Y(0.175)S(0.897)PVER;SLS(0.948)Y(0.406)S(0.645)PVER ;;;;; 192.6 2.18E-08 9490330000 6270010 6764880 5479990 2453070 7895150 6454080 7061920 7297280 5528850 6941980 TRUE FALSE FALSE 5830514.677 6228806.272 7601988.887 5710870.931 6904866.668 5657841.23 5294952.923 5635848.643 6008095.17 5203663.023 1.120463537 1.197004157 1.460891847 1.097471321 1.326924253 1.08728048 1.017543392 1.083054113 1.154589593 1 22.31109611 -6.361305713 6.722481152 1.068705126 1.242089656 0.407541 0.103861086 0.263488962 15.23534735 0.036382288 0.032006751 4.35E-07 6.361305713 0.17338453 SLS(ph)YSEILR ddPTM_HeLa_A485_30min_R1 1 SLSYSEILR 9 0 Q5JW01;H0YCM7;Q5JVZ5;Q96JJ3-3;Q96JJ3 Q5JW01 ELMO2 Engulfment and cell motility protein 2 1 0 S(0.001)LS(0.897)YS(0.101)EILR 127.51 0.00027307 21906000 39107 51147 55433 40613 66453 50004 64423 74328 58304 59189 TRUE FALSE FALSE 47806.21723 57128.19673 75939.97346 42831.58535 59836.70599 52622.13212 50658.49976 56098.94146 70005.078 44434.27159 1.075886146 1.285678704 1.709040584 0.963931304 1.346634115 1.184269039 1.140077196 1.262515159 1.575474864 1 15.43938522 -5.29871819 24.99991325 1.223008443 1.349750581 0.084470858 0.217831388 1656.000081 1110543.384 0.061041143 0.090541134 5.03E-06 5.29871819 0.126742137 SLS(ph)YSEILR ddPTM_HeLa_A486_30min_R1 2 SLSYSEILR 9 0 Q5JW01;H0YCM7;Q5JVZ5;Q96JJ3-3;Q96JJ3 Q5JW01 ELMO2 Engulfment and cell motility protein 2 1 0 S(0.004)LS(0.81)YS(0.186)EILR;S(0.014)LS(0.935)YS(0.051)EILR ; 117.99 0.00055903 38512000 67129 72483 65281 24678 90050 72195 78442 83211 58064 71270 TRUE FALSE FALSE 62423.60375 66739.1831 90559.55149 57451.63116 78755.08932 63288.31492 58814.98193 64265.67178 63097.03427 53423.52811 1.168466516 1.249247016 1.695124876 1.07539942 1.474164888 1.184652477 1.10091909 1.20294698 1.18107202 1 15.70518763 -6.464785287 8.794008151 1.13873688 1.333604591 0.265539808 0.16676597 0.593377923 85.78915609 0.057580828 0.050568165 3.43E-07 6.464785287 0.194867711 SLS(ph)YSPVER ddPTM_HeLa_A485_30min_R1 1 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.003)LS(0.997)YSPVER 125.74 0.00029228 135700000 179790 205460 168880 161990 347240 148380 327500 247800 174960 359400 TRUE FALSE FALSE 219783.6652 229486.7597 231355.7397 170839.1035 312667.5664 156148.9474 257526.9496 187026.6615 210072.8672 269808.1943 0.814592254 0.850555189 0.857482258 0.633187231 1.158851262 0.578740567 0.954481573 0.693183771 0.778600768 1 18.04157464 -7.279488591 24.84118697 0.801919268 0.831634156 0 0.166858794 7562.725021 10408537.24 0.084394051 0.04066277 5.25E-08 7.279488591 0.029714888 SLS(ph)YSPVER ddPTM_HeLa_A486_30min_R1 1 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLS(0.999)YSPVER 125.74 0.00029228 117060000 276120 241430 181840 80478 255760 199170 288460 310150 222980 298280 TRUE FALSE FALSE 256765.4139 222298.2075 252253.3178 187356.8511 223680.1959 174598.4304 216284.257 239535.6155 242308.0859 223588.7465 1.148382546 0.994228068 1.128202209 0.837952956 1.000409007 0.780890958 0.967330692 1.071322324 1.08372219 1 17.77048805 -5.23622657 24.98766829 0.960201539 1.080666657 0.267130665 0.09605742 1163.867772 1153473.162 0.027164071 0.047027039 5.80E-06 5.23622657 0.120465118 SLSALGNVISALAEGSTYVPYR ddPTM_HeLa_A485_30min_R1 1 SLSALGNVISALAEGSTYVPYR 22 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 0 79.652 0.0054913 5885800 2707.1 4776.2 4679.7 3194.5 5276.7 3307 5258 3127.1 3335.7 4479.2 FALSE FALSE TRUE 3309.285056 5334.735043 6410.915769 3369.007446 4751.33322 3480.149406 4134.585346 2360.173822 4005.144393 3362.617874 0.984139495 1.586482688 1.906525216 1.001900178 1.412986369 1.03495239 1.229573357 0.701885825 1.191079255 1 11.71536913 -6.166376404 1.091559285 0.987123781 1.452692805 0.269540456 0.282922194 0.62465268 1.563305763 0.145378668 0.143769809 6.82E-07 6.166376404 0.465569025 SLSAS(ph)PALGSTK ddPTM_HeLa_A485_30min_R1 1 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 SLS(0.07)AS(0.93)PALGSTK 231.69 9.43E-24 1296700000 1210600 1209800 1037200 1105700 1405400 1344400 1922700 1918900 1057800 1751800 TRUE FALSE FALSE 1479893.793 1351275.586 1420903.441 1166101.591 1265473.441 1414790.705 1511899.438 1448286.766 1270090.757 1315108.499 1.125301672 1.027501219 1.08044579 0.88669611 0.962257823 1.075797705 1.149638557 1.101267893 0.9657688 1 20.3267504 -6.300869074 24.38290857 1.070520352 1.013402809 0.058232419 0.076853264 979.6988268 605832.0076 0.028507565 0.025141771 5.00E-07 6.300869074 -0.057117543 SLSDS(ph)ESDDSK ddPTM_HeLa_A486_30min_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 SLS(0.157)DS(0.823)ES(0.021)DDSK 163.93 6.19E-08 1921400000 101910 107530 58025 53050 97562 115230 151430 129850 86051 157580 TRUE FALSE FALSE 94766.63526 99008.93118 80493.83396 123503.081 85324.86423 101014.0942 113540.6123 100285.9896 93509.96996 118120.9423 0.802284789 0.838199639 0.681452691 1.045564644 0.722351706 0.855175147 0.961223388 0.849011087 0.791645987 1 16.84990525 -14 0.134563371 1.507006428 0.78233329 0.192700473 0.099829348 242.6052413 2.02995817 33.50396926 0.672938614 1.00E-14 14 -0.724673139 SLSDS(ph)ESDDSKSK ddPTM_HeLa_A485_30min_R1 3 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 SLSDS(0.566)ES(0.434)DDSKSK;SLSDS(0.921)ES(0.079)DDSKSK;SLSDS(0.565)ES(0.434)DDSKSK ;; 177.58 2.26E-13 1754460000 1115800 1743200 1610500 1443230 2155450 1947770 2649250 3222410 1605780 2037430 TRUE FALSE FALSE 1364005.861 1947052.076 2206290.968 1522070 1940845.83 2049752.225 2083216.095 2432108.895 1928045.317 1529536.197 0.891777431 1.272968943 1.442457506 0.995118653 1.268911343 1.340113578 1.36199202 1.590095677 1.260542458 1 20.54466282 -5.9962994 24.95404248 1.345519118 1.174151497 0.114788889 0.195003497 215.1640911 1450881.439 0.059984571 0.067700319 1.01E-06 5.9962994 -0.171367621 SLSDS(ph)ESDDSKSK ddPTM_HeLa_A486_30min_R1 2 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.001)LS(0.025)DS(0.532)ES(0.44)DDS(0.001)KSK;SLSDS(0.605)ES(0.395)DDSKSK ; 207.79 4.72E-22 700760000 1290620 1382050 1156060 878980 1694820 1412220 1967350 2019950 1127800 2367710 TRUE FALSE FALSE 1200154.203 1272531.325 1603717.392 2046309.861 1482239.872 1237994.655 1475098.221 1560051.48 1225558.612 1774820.005 0.676211785 0.716991763 0.903594386 1.152967544 0.835149406 0.697532511 0.831125532 0.878991377 0.690525579 1 20.75924129 -11.52735527 2.264542556 3.684111343 0.828400655 0.133146342 0.136132128 6385562.331 746725.2774 88580762.96 0.037420807 2.97E-12 11.52735527 -2.855710688 SLSDSES(ph)DDSKSK ddPTM_HeLa_A486_30min_R1 2 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 SLSDS(0.231)ES(0.769)DDSKSK;SLSDS(0.172)ES(0.828)DDSKSK ; 167.69 1.52E-10 470870000 596620 508360 282920 477210 564630 610430 957650 909570 380390 1178190 TRUE FALSE FALSE 554800.0189 468075.7022 392474.2009 1110968.997 493808.8404 535121.353 718035.841 702480.7668 413362.5115 883163.5553 0.628196233 0.529998888 0.44439583 1.25794253 0.559136343 0.605914216 0.813027028 0.795414125 0.46804752 1 19.75232111 -11.53684571 2.287322428 6.313229381 0.685648446 0.153612498 0.226105669 12180442.09 779775.9391 338463793.9 0.058757474 2.91E-12 11.53684571 -5.627580934 SLSES(ph)SVIMDR ddPTM_HeLa_A486_30min_R1 1 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 SLS(0.393)ES(0.6)S(0.007)VIMDR 216.97 9.42E-18 606430000 864700 1156600 1095700 436220 1477500 1191200 1283300 1333600 970890 1083100 TRUE FALSE FALSE 804088.9953 1064946.804 1519984.384 1015542.205 1292178.173 1044241.855 962204.7666 1029968.392 1055047.527 811884.7102 0.990398003 1.31169708 1.872167766 1.250845339 1.591578406 1.286194754 1.18514951 1.268614102 1.299504121 1 19.63091535 -6.510096478 20.60063147 1.214268344 1.418127242 0.16162134 0.227041505 119.1814046 192084.7499 0.083567392 0.070089527 3.09E-07 6.510096478 0.203858898 SLSFPILNPALSQPSQPS(ph)SPLPGSHGR ddPTM_HeLa_A486_30min_R1 1 SLSFPILNPALSQPSQPSSPLPGSHGR 27 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 0 SLSFPILNPALSQPS(0.001)QPS(0.49)S(0.49)PLPGS(0.019)HGR 138.88 1.04E-06 317690000 116890 117470 92514 29133 138760 98983 98617 108080 92635 98750 TRUE FALSE FALSE 108696.6146 108161.2494 128337.8984 67823.0963 121355.4269 86771.48385 73941.98354 83472.54337 100664.6764 74022.35725 1.468429521 1.461197041 1.733772109 0.916251506 1.639442885 1.172233459 0.998914197 1.127666647 1.359922598 1 16.17567346 -5.734825415 0.734185871 1.123921784 1.541211849 0.301129746 0.226453016 0.993471831 1.148257409 0.132205578 0.242962555 1.84E-06 5.734825415 0.417290065 SLSFPILNPALSQPSQPSS(ph)PLPGSHGR ddPTM_HeLa_A485_30min_R1 2 SLSFPILNPALSQPSQPSSPLPGSHGR 27 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 0 SLSFPILNPALSQPSQPS(0.153)S(0.806)PLPGS(0.041)HGR;SLSFPILNPALSQPSQPS(0.149)S(0.811)PLPGS(0.04)HGR ; 178.59 3.48E-20 594370000 278420 343900 335470 238439 404840 305120 331670 343760 296247 317050 TRUE FALSE FALSE 340353.5685 384116.1135 459574.3131 251464.3188 364532.7081 321095.6114 260805.995 259452.321 355701.0556 238015.2699 1.429965265 1.613829708 1.930860626 1.056504984 1.531551771 1.34905467 1.095753206 1.090065865 1.494446368 1 17.86069461 -5.763633931 0.959320131 1.192165943 1.625620796 0.337630404 0.231231885 0.664838888 1.315543973 0.110125345 0.173708128 1.72E-06 5.763633931 0.433454853 SLSFPILNPALSQPSQPSS(ph)PLPGSHGR ddPTM_HeLa_A486_30min_R1 1 SLSFPILNPALSQPSQPSSPLPGSHGR 27 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 1 0 SLSFPILNPALSQPSQPS(0.159)S(0.833)PLPGS(0.008)HGR 157.43 7.22E-10 360470000 152880 170200 149110 43892 189540 131150 181450 159420 148870 161730 TRUE FALSE FALSE 142163.9015 156712.7321 206849.3853 102182.7942 165766.1258 114970.0464 136049.2908 123123.5461 161774.1715 121231.7553 1.172662238 1.292670652 1.706231051 0.842871523 1.367349053 0.948349268 1.12222487 1.015604746 1.334420763 1 16.88740812 -5.270296241 24.99999369 1.097749538 1.380736257 0.326276859 0.197453666 751.7829829 2122034.13 0.053238446 0.080321059 5.37E-06 5.270296241 0.282986719 SLSFPKLDS(ph)DDS(ph)NQK ddPTM_HeLa_A485_30min_R1 1 SLSFPKLDSDDSNQK 15 1 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 2 0 S(0.222)LS(0.27)FPKLDS(0.508)DDS(1)NQK 69.125 0.027107 638790000 169340 184620 153030 95681 251440 209360 268540 321430 196930 118790 TRUE FALSE FALSE 207009.0988 206209.703 209642.1651 100907.8108 226405.7507 220321.7659 211164.2352 242598.7885 236452.0447 89177.83917 2.321306512 2.312342449 2.350832528 1.131534602 2.538811804 2.470588746 2.367900335 2.720393214 2.651466405 1 16.44439762 SLSFPKLDS(ph)DDSNQK ddPTM_HeLa_A486_30min_R1 1 SLSFPKLDSDDSNQK 15 1 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 S(0.118)LS(0.118)FPKLDS(0.651)DDS(0.114)NQK 47.09 0.03636 149020000 195610 220780 185450 3208.6 341020 123270 108340 169770 142000 30669 TRUE FALSE FALSE 181898.7491 203284.5887 257261.2065 7469.782954 298246.0917 108062.2007 81232.1861 131117.0771 154308.6743 22989.28278 7.912328144 8.842580723 11.19048424 0.324924576 12.97326648 4.700546849 3.533480661 5.703400072 6.712200455 1 14.48867384 -7.307433392 0.184441947 4.21E-11 10.87498861 0.265353632 3.342108869 4.731843473 0.887077534 19.88309249 21.89838582 4.93E-08 7.307433392 10.87498861 SLSGS(ph)PLK ddPTM_HeLa_A485_30min_R1 1 SLSGSPLK 8 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 SLS(0.024)GS(0.976)PLK 83.862 0.0062258 1049500000 628060 600770 529680 768470 856630 632620 869980 976960 609240 1504700 TRUE FALSE FALSE 767769.7802 671024.8255 725630.6738 810449.5702 771340.9094 665743.005 684101.6659 737359.0282 731508.8797 1129605.982 0.67967928 0.594034412 0.642375028 0.71746218 0.682840673 0.589358604 0.605610874 0.652757723 0.647578794 1 20.1073882 -8.852199166 2.206217165 1.000006342 0.64430493 0.881350851 0.038992914 19.48550663 49.3867621 0.040454391 0.011031828 1.41E-09 8.852199166 -0.355701412 SLSGS(ph)PLK ddPTM_HeLa_A486_30min_R1 3 SLSGSPLK 8 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 SLS(0.009)GS(0.991)PLK;SLS(0.074)GS(0.926)PLK;SLS(0.007)GS(0.993)PLK ;; 99.283 0.002363 1488120000 1730070 1712100 920840 719300 1738610 1905600 2287660 1916190 1403960 2635400 TRUE FALSE FALSE 1608801.027 1576426.961 1277413.909 1674566.751 1520537.322 1670506.447 1715263.272 1479915.367 1525656.383 1975478.686 0.814385414 0.797997453 0.646635126 0.847676446 0.769705759 0.845621093 0.868277286 0.749142665 0.772297061 1 20.91377085 SLSGS(ph)PLKVK ddPTM_HeLa_A485_30min_R1 2 SLSGSPLKVK 10 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 S(0.004)LS(0.021)GS(0.975)PLKVK;SLS(0.032)GS(0.968)PLKVK ; 101.53 0.00071034 851790000 1374950 2917900 1154290 1095750 3189700 3558900 5539000 12121900 1740680 2527000 TRUE FALSE FALSE 1680802.884 3259123.023 1581309.905 1155608.048 2872122.268 3745238.501 4355547.401 9148985.019 2090018.51 1897065.406 0.886001547 1.717981369 0.833555817 0.609155617 1.513981679 1.974227398 2.2959395 4.822704051 1.101711361 1 20.85533799 -6.378874336 2.046398147 2.602350812 1.06450421 0.221169662 1.031513543 0.407568036 3.362402489 0.419995729 0.355988479 4.18E-07 6.378874336 -1.537846602 SLSGS(ph)SPCPK ddPTM_HeLa_A485_30min_R1 2 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLS(0.001)GS(0.608)S(0.391)PCPK;SLSGS(0.939)S(0.061)PCPK ; 199.19 3.46E-15 995120000 2009640 1870270 1612410 2644600 2721160 2156680 3356950 3188950 2036770 3780400 TRUE FALSE FALSE 2456677.485 2088981.807 2208907.557 2789067.802 2450231.756 2269600.43 2639710.209 2406855.012 2445531.057 2838015.853 0.865632051 0.736071226 0.778328125 0.982752721 0.863360842 0.799713796 0.930125251 0.848076662 0.861704509 1 21.43645122 -14 0.096308932 1.456186923 0.746335193 0.337522842 0.065623126 240.3959741 1.585053047 22.4202593 1.311443445 1.00E-14 14 -0.70985173 SLSGS(ph)SPCPK ddPTM_HeLa_A486_30min_R1 3 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLSGS(0.791)S(0.209)PCPK;SLS(0.328)GS(0.669)S(0.002)PCPK;SLS(0.113)GS(0.886)S(0.001)PCPK ;; 207.95 4.70E-14 4813880000 3346360 3498300 2046780 1434690 3535430 3718590 4525460 4177100 2699520 4186890 TRUE FALSE FALSE 3111797.445 3221081.967 2839348.031 3340030.825 3091983.403 3259828.174 3393142.043 3226065.515 2933516.567 3138465.492 0.991502839 1.026323844 0.904693086 1.064224167 0.985189549 1.038669433 1.081146838 1.027911737 0.934697729 1 21.58162792 -5.296223561 24.99961923 1.022018155 0.979388184 0.149370594 0.047942295 1186.928173 853050.0837 0.013557831 0.020110594 5.06E-06 5.296223561 -0.04262997 SLSGSS(ph)PCPK ddPTM_HeLa_A485_30min_R1 6 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLSGS(0.017)S(0.983)PCPK;SLSGS(0.158)S(0.842)PCPK;SLSGS(0.026)S(0.974)PCPK;SLSGS(0.158)S(0.842)PCPK;SLSGS(0.195)S(0.805)PCPK;SLSGS(0.087)S(0.913)PCPK ;;;;; 216.53 7.69E-17 13372290000 8090840 7652560 6402890 10602560 11022300 8916250 13614620 13197480 7711780 14188130 TRUE FALSE FALSE 9890619.445 8547460.324 8771585.457 11181751.01 9924881.11 9383091.063 10705745.22 9960777.337 9259463.509 10651290.3 0.928584159 0.802481209 0.823523273 1.049802483 0.931800827 0.880934684 1.005112518 0.935170956 0.86932787 1 23.34452487 -5.226514155 24.99289627 0.948727821 0.84662469 0.36989421 0.060493321 654.8776087 468637.2888 0.016238504 0.02812446 5.94E-06 5.226514155 -0.10210313 SLSGSS(ph)PCPK ddPTM_HeLa_A486_30min_R1 4 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLSGS(0.002)S(0.998)PCPK;SLSGS(0.049)S(0.951)PCPK;SLSGS(0.01)S(0.99)PCPK;SLSGS(0.103)S(0.897)PCPK ;;; 212.09 2.11E-14 10202500000 6851620 7362910 4221770 2951960 7057680 7512390 9701470 8818000 5231900 8484560 TRUE FALSE FALSE 6371356.82 6779446.196 5856552.407 6872312.064 6172439.964 6585587.702 7274059.594 6810333.896 5685405.305 6359970.951 1.001790239 1.065955529 0.920845779 1.080557147 0.970513861 1.035474494 1.143725286 1.070812107 0.893935735 1 22.60058875 -6.495912986 24.55769464 1.041102228 1.009616721 0.006573988 0.072414578 2328.119131 2120218.323 0.025578155 0.022481725 3.19E-07 6.495912986 -0.031485507 SLSKS(ph)DSDLLTCSPTEDATMGSR ddPTM_HeLa_A485_30min_R1 3 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.041)LS(0.226)KS(0.73)DS(0.003)DLLTCSPTEDATMGSR;S(0.001)LS(0.3)KS(0.699)DSDLLTCSPTEDATMGSR;S(0.003)LS(0.157)KS(0.839)DSDLLTCSPTEDATMGSR ;; 276.46 4.02E-75 2049210000 421750 389030 366480 610090 692670 501500 806570 794120 437140 857640 TRUE FALSE FALSE 515566.8325 434523.6744 502056.2025 643417.6719 623705.3427 527757.7645 634239.7304 599360.8249 524869.9883 643846.1317 0.800760938 0.674887451 0.779776685 0.999334531 0.968718009 0.819695481 0.985079663 0.930906928 0.815210285 1 19.29635642 -5.113239354 5.296413131 0.926958029 0.73549154 0.588366033 0.069192784 0.149069549 5.925862728 0.018563107 0.03309507 7.70E-06 5.113239354 -0.191466489 SLSKS(ph)DSDLLTCSPTEDATMGSR ddPTM_HeLa_A486_30min_R1 2 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.001)LS(0.095)KS(0.902)DS(0.002)DLLTCSPTEDATMGSR;S(0.004)LS(0.047)KS(0.891)DS(0.059)DLLTCSPTEDATMGSR ; 237.5 5.92E-49 972300000 474310 506330 302150 263360 665050 602070 785580 793610 418500 699690 TRUE FALSE FALSE 441063.3183 466206.5668 419150.5719 613115.3895 581633.2277 527792.7248 589019.575 612922.3274 454775.917 524483.0698 0.840948629 0.888887733 0.799168927 1.168989858 1.108964733 1.006310318 1.123047833 1.168621759 0.867093607 1 19.00053668 -5.253862168 24.99032068 1.072334541 0.847590349 0.563844263 0.088507995 408.3811799 1346874.512 0.023542141 0.039800676 5.57E-06 5.253862168 -0.224744192 SLSLASTSRDS(ph)PGAVAAPLISGVEIK ddPTM_HeLa_A485_30min_R1 1 SLSLASTSRDSPGAVAAPLISGVEIK 26 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 SLSLAS(0.032)T(0.026)S(0.032)RDS(0.91)PGAVAAPLISGVEIK 181.93 2.00E-20 148220000 105750 112570 90475 144530 188150 135940 185880 162790 134630 202820 TRUE FALSE FALSE 129273.7227 125734.0823 123945.4675 152425.3079 169417.1254 143057.6082 146165.2195 122865.4973 161649.0061 152260.7066 0.849028784 0.82578155 0.814034495 1.001081049 1.112677914 0.93955697 0.959966775 0.806941594 1.061659372 1 17.21618415 -5.259496528 24.66810128 0.977699764 0.829231595 0.459902758 0.076075471 141.0278939 1790594.431 0.02197927 0.035770517 5.50E-06 5.259496528 -0.148468169 SLSLASTSRDS(ph)PGAVAAPLISGVEIK ddPTM_HeLa_A486_30min_R1 2 SLSLASTSRDSPGAVAAPLISGVEIK 26 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 SLSLAS(0.041)T(0.034)S(0.028)RDS(0.897)PGAVAAPLISGVEIK;SLSLAS(0.008)T(0.007)S(0.045)RDS(0.94)PGAVAAPLISGVEIK ; 213.52 1.90E-29 323320000 284928 273297 178708 132883 306768 292629 372906 366732 220902 367031 TRUE FALSE FALSE 264956.0186 251639.9504 247908.5236 309358.3395 268290.2969 256527.4092 279600.9746 283235.1293 240049.9632 275124.0486 0.963042016 0.914641783 0.901079076 1.124432201 0.975161198 0.932406347 1.016272391 1.02948154 0.872515378 1 18.06972273 SLSLK(ac)LIQQLR ddPTM_HeLa_A485_30min_R1 2 SLSLKLIQQLR 11 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 0 1 ; SLSLK(1)LIQQLR;SLSLK(1)LIQQLR 182.28 1.76E-08 58988000 36210 49299 43542 41978 66391 44248 56259 58764 40137 63682 FALSE TRUE FALSE 44264.78958 55064.08921 59649.99773 44271.15185 59780.87893 46564.75686 44238.80506 44352.03686 48192.12774 47807.24938 0.9259012 1.151793712 1.247718673 0.926034282 1.250456358 0.974010374 0.925357673 0.92772618 1.008050628 1 15.54494178 -6.486152523 24.574165 0.957892656 1.102786341 0.279712207 0.106771051 577.3351685 386305.6594 0.036316593 0.032017167 3.26E-07 6.486152523 0.144893685 SLSLK(ac)LIQQLR ddPTM_HeLa_A486_30min_R1 2 SLSLKLIQQLR 11 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 0 1 ; SLSLK(1)LIQQLR;SLSLK(1)LIQQLR 190.86 3.89E-09 58402000 36918 38045 27502 11343.3 45936 31380 40646 39195 31461 34169 FALSE TRUE FALSE 34330.23884 35030.17564 38151.51093 26407.77566 40174.27854 27508.65465 30475.94089 30271.15412 34188.06481 25612.86 1.340351638 1.367679191 1.489545132 1.031035802 1.56851982 1.074017296 1.189868718 1.181873251 1.334800753 1 14.64458074 -11.22557627 0.045694308 2.15E-08 2.024248307 0.276698934 0.156150841 466.8484548 2.793953619 90.45043243 40.94460022 5.95E-12 11.22557627 2.024248286 SLSLS(ph)TNLQER ddPTM_HeLa_A485_30min_R1 2 SLSLSTNLQER 11 0 A0A087WWS6;P01562 A0A087WWS6 IFNA13;IFNA1 Interferon alpha-1/13 1 0 SLS(0.002)LS(0.499)T(0.499)NLQER;SLS(0.01)LS(0.495)T(0.495)NLQER ; 84.479 0.0042907 1221930000 981310 1357750 1259510 1047730 1555300 1312310 1546460 1565390 1140100 1321180 TRUE FALSE FALSE 1199599.024 1516527.052 1725455.162 1104964.837 1400448.871 1381020.522 1216046.188 1181475.648 1368907.612 991834.1405 1.20947543 1.529012755 1.739660989 1.114062112 1.411978892 1.392390588 1.226058005 1.191202843 1.380177952 1 19.91973936 -8.777193981 0.212077719 0.841886313 1.505160824 0.313516192 0.169711838 8.785293726 0.824715269 1.630984697 0.542395038 1.67E-09 8.777193981 0.663274511 SLSLS(ph)TNLQER ddPTM_HeLa_A486_30min_R1 3 SLSLSTNLQER 11 0 A0A087WWS6;P01562 A0A087WWS6 IFNA13;IFNA1 Interferon alpha-1/13 1 0 SLS(0.011)LS(0.494)T(0.494)NLQER;SLS(0.002)LS(0.499)T(0.499)NLQER;SLS(0.003)LS(0.499)T(0.499)NLQER ;; 74.611 0.010634 758180000 1643130 1854020 1458860 597300 2030390 1544560 1756540 1785680 1448940 1717560 TRUE FALSE FALSE 1527955.072 1707100.703 2023769.662 1390544.586 1775719.554 1354007.891 1317035.113 1379119.645 1574535.286 1287471.797 1.186787218 1.325932504 1.571894365 1.080058289 1.379229866 1.051679652 1.022962302 1.071184354 1.222966818 1 20.2961094 -6.268116351 24.60742596 1.075032864 1.311643995 0.444500857 0.131342813 418.5452522 1542509.018 0.045617075 0.041166933 5.39E-07 6.268116351 0.236611131 SLSNS(ph)NPDISGTPTSPDDEVR ddPTM_HeLa_A485_30min_R1 5 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SLSNS(1)NPDISGTPTSPDDEVR;SLSNS(1)NPDISGTPTSPDDEVR;SLS(0.001)NS(0.998)NPDISGTPTSPDDEVR;SLSNS(1)NPDISGTPTSPDDEVR;S(0.005)LS(0.032)NS(0.963)NPDISGTPTSPDDEVR ;;;; 461.4 8.02E-238 5136420000 1003029 1439531 1413607 1143866 1745626 1479397 1628183 1777065 1307775 1583097 TRUE FALSE FALSE 1226149.341 1607871.628 1936559.054 1206352.503 1571825.346 1556855.939 1280308.401 1341237.022 1570233.447 1188460.053 1.031712709 1.352903385 1.629469203 1.015055155 1.322573142 1.309977509 1.077283497 1.128550362 1.321233678 1 20.18066198 -6.750960293 24.75877041 1.142479412 1.2865943 0.134418833 0.178660992 400.2252702 945607.1883 0.069046009 0.052884076 1.77E-07 6.750960293 0.144114889 SLSNS(ph)NPDISGTPTSPDDEVR ddPTM_HeLa_A486_30min_R1 4 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SLSNS(1)NPDISGTPTSPDDEVR;SLSNS(1)NPDISGTPTSPDDEVR;SLS(0.002)NS(0.998)NPDISGTPTSPDDEVR;SLS(0.011)NS(0.988)NPDISGTPTSPDDEVR ;;; 463.9 6.49E-238 3612030000 668202 797409 620716 291656 858821 636016 790968 728611 668630 747129 TRUE FALSE FALSE 621364.4904 734219.4067 861073.8586 678989.9075 751099.662 557550.8125 593059.4404 562722.1808 726587.3868 560043.0354 1.109494184 1.311005334 1.537513734 1.212388807 1.341146331 0.995549944 1.058953336 1.004783821 1.297377774 1 19.09517817 -6.25479046 24.79997776 1.070858235 1.310864067 0.440347294 0.130017389 454.5430301 1695412.82 0.043545621 0.042583123 5.56E-07 6.25479046 0.240005832 SLSPS(ph)VR ddPTM_HeLa_A485_30min_R1 3 SLSPSVR 7 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 SLS(0.114)PS(0.886)VR;S(0.005)LS(0.427)PS(0.568)VR;S(0.002)LS(0.495)PS(0.503)VR ;; 131.22 0.0013607 1337980000 670350 1024240 991860 704740 1114330 984270 1035900 1177500 937010 904110 TRUE FALSE FALSE 819467.0448 1144015.958 1358790.289 743238.1617 1003383.393 1035804.855 814571.5025 888716.2788 1125059.312 678732.0159 1.20734992 1.685519368 2.001954021 1.095039197 1.478320411 1.526088104 1.200137143 1.309377277 1.657589867 1 19.37248254 -5.275786116 24.99529674 1.346399139 1.636998973 0.225031543 0.259347882 1220.767702 2126853.766 0.072296821 0.107777819 5.30E-06 5.275786116 0.290599834 SLSRT(ph)PETLLPFAEAEAFLKK ddPTM_HeLa_A485_30min_R1 2 SLSRTPETLLPFAEAEAFLKK 21 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 S(0.115)LS(0.165)RT(0.711)PET(0.009)LLPFAEAEAFLKK;S(0.024)LS(0.144)RT(0.796)PET(0.035)LLPFAEAEAFLKK ; 176.68 1.97E-14 190849000 69788 91536 55835 64445 131327 131843 173741 254680 74586 108543 TRUE FALSE FALSE 85312.09983 102240.3389 76490.68999 67965.46717 118251.6228 138746.0956 136619.816 192219.3307 89554.72606 81485.22769 1.046963999 1.254710109 0.938706219 0.834083295 1.451203195 1.702714707 1.676620657 2.358946967 1.0990302 1 16.31425092 -5.9346295 4.742704816 1.652596681 1.032546349 0.325486273 0.365372195 0.212480639 9.424260075 0.112571949 0.127457994 1.16E-06 5.9346295 -0.620050333 SLSRT(ph)PETLLPFAEAEAFLKK ddPTM_HeLa_A486_30min_R1 1 SLSRTPETLLPFAEAEAFLKK 21 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 S(0.004)LS(0.029)RT(0.956)PET(0.012)LLPFAEAEAFLKK 219.26 1.65E-35 64020000 154820 121760 88897 94265 214170 148080 244300 253740 101750 185360 TRUE FALSE FALSE 143967.9175 112111.2942 123320.2991 219453.6839 187306.8015 129811.3952 183173.5561 195968.9411 110569.7719 138944.6495 1.036153015 0.806877376 0.887549823 1.579432419 1.348067754 0.934266959 1.318320329 1.410410129 0.79578287 1 17.08415075 SLSS(ph)PGGPSKPK ddPTM_HeLa_A485_30min_R1 1 SLSSPGGPSKPK 12 1 J3QL04;J3KRY8;J3QR12;Q9BZE9-4;Q9BZE9-3;Q9BZE9;Q9BZE9-2 J3QL04 ASPSCR1 Tether containing UBX domain for GLUT4 1 0 S(0.001)LS(0.202)S(0.798)PGGPSKPK 91.812 0.00096161 437260000 614320 628630 462530 468400 716960 667820 716620 771470 657980 636740 TRUE FALSE FALSE 750973.3646 702142.8101 633639.0945 493987.5059 645576.945 702786.0226 563508.2828 582265.7729 790030.5506 478012.4363 1.57103311 1.468879796 1.325570312 1.033419778 1.350544245 1.470225394 1.17885695 1.21809754 1.652740579 1 18.86668863 -11.22313824 2.050887751 4.59E-05 1.348638155 0.269348498 0.178029322 3574165.622 578932.5268 16583091.25 0.046039908 5.98E-12 11.22313824 1.348592225 SLSS(ph)PPSSK ddPTM_HeLa_A485_30min_R1 1 SLSSPPSSK 9 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 SLS(0.367)S(0.632)PPS(0.001)SK 129.88 0.00024754 580950000 1762500 1991500 1621800 2234400 2514100 2171700 2795400 3024400 1893600 2736500 TRUE FALSE FALSE 2154562.044 2224388.601 2221771.309 2356459.614 2263787.376 2285406.854 2198139.954 2282661.158 2273628.151 2054340.912 1.048785054 1.082774815 1.081500785 1.147063567 1.10195312 1.112476922 1.069997653 1.111140388 1.106743354 1 20.97024418 -9.650641049 13.98464612 1.000000002 1.096888654 0.557202855 0.025611445 0 0 0.025542643 0.006195001 2.24E-10 9.650641049 0.096888652 SLSS(ph)PPSSK ddPTM_HeLa_A486_30min_R1 1 SLSSPPSSK 9 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 SLS(0.028)S(0.97)PPS(0.001)S(0.001)K 80.102 0.0081429 889950000 3691100 3581400 2079300 1351400 3593800 3633400 4050300 4013500 2819000 4317400 TRUE FALSE FALSE 3432372.951 3297596.821 2884460.646 3146127.496 3143032.093 3185148.05 3036872.1 3099713.664 3063353.19 3236294.938 1.060587189 1.018941995 0.891284849 0.972138682 0.971182217 0.984195851 0.938379276 0.957797025 0.946561808 1 21.62591166 -4.53509503 24.17711525 0.957284614 1.050175914 0.593523589 0.028106266 78.66968279 155694.4005 0.006930521 0.018368757 2.92E-05 4.53509503 0.0928913 SLSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SLSSPR 6 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.066)LS(0.048)S(0.885)PR 65.803 0.033034 382180000 487880 706250 615390 518820 619040 630200 709680 762970 622000 706240 TRUE FALSE FALSE 596407.2228 788839.7939 843048.3695 547161.8229 557406.204 663196.2975 558051.0704 575850.4112 746829.6947 530187.3654 1.124898973 1.487850985 1.590095171 1.03201596 1.05133815 1.250871561 1.052554449 1.086126243 1.408614659 1 19.01614276 -5.272185308 24.88803137 1.128560559 1.409638644 0.385693883 0.158914541 660.9185583 1530714.126 0.044459954 0.066692285 5.34E-06 5.272185308 0.281078085 SLSS(ph)PTDNLELS(ph)LR ddPTM_HeLa_A486_30min_R1 1 SLSSPTDNLELSLR 14 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 S(0.005)LS(0.023)S(0.971)PT(0.002)DNLELS(1)LR 86.455 0.0034462 18305000 43579 46566 35049 19947 49315 49419 49074 45781 44573 56313 TRUE FALSE FALSE 40524.33714 42875.94057 48620.91144 46437.62407 43129.45286 43322.18624 36795.16615 35357.66569 48436.62353 42211.85826 0.960022582 1.015732127 1.151830633 1.1001085 1.021737839 1.026303698 0.871678425 0.837624003 1.147464848 1 15.36536072 -6.562699447 11.2488141 0.950341648 1.053213837 0.158587929 0.091225816 1.034213797 287.735657 0.035459964 0.027478674 2.74E-07 6.562699447 0.102872189 SLSS(ph)PTDNLELSLR ddPTM_HeLa_A485_30min_R1 2 SLSSPTDNLELSLR 14 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 SLSS(1)PTDNLELSLR;SLSS(0.997)PT(0.002)DNLELSLR ; 373.1 1.68E-109 1492940000 1511450 2022700 2028090 1850180 2463800 1972490 2480000 2588700 1798650 2309000 TRUE FALSE FALSE 1847666.838 2259237.17 2778364.887 1951250.648 2218495.421 2075766.526 1950127.74 1953817.266 2159622.557 1733408.794 1.065915233 1.303349318 1.60283304 1.125672522 1.279845486 1.197505478 1.125024718 1.127153198 1.245881851 1 20.7251805 -6.252394974 1.25710873 1.131682094 1.302956911 0.193586406 0.143494935 0.775712029 2.504743479 0.071873735 0.065278059 5.59E-07 6.252394974 0.171274817 SLSS(ph)PTDNLELSLR ddPTM_HeLa_A486_30min_R1 3 SLSSPTDNLELSLR 14 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 SLS(0.002)S(0.99)PT(0.008)DNLELSLR;SLS(0.001)S(0.999)PTDNLELSLR;SLS(0.001)S(0.999)PTDNLELSLR ;; 344.18 1.82E-82 2268820000 2691770 2917710 2482710 1011942 3374610 2704410 2977610 3034620 2562700 3113650 TRUE FALSE FALSE 2503090.823 2686500.033 3444081.801 2355852.117 2951334.947 2370767.391 2232580.484 2343703.271 2784836.899 2333971.774 1.072459767 1.151042212 1.4756313 1.009374725 1.264511842 1.015765237 0.956558477 1.004169501 1.193175055 1 21.15435568 -6.273375513 23.94273705 1.029358281 1.197505987 0.276070336 0.129941986 580.4061847 1164234.208 0.045466748 0.040451669 5.33E-07 6.273375513 0.168147706 SLSS(ph)PTVTLSAPLEGAK ddPTM_HeLa_A485_30min_R1 2 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 SLS(0.029)S(0.971)PTVTLSAPLEGAK;SLS(0.408)S(0.591)PTVTLSAPLEGAK ; 376.78 5.49E-120 1188010000 702630 661170 482990 744610 806640 777850 1165590 1156660 630360 1328280 TRUE FALSE FALSE 858927.6195 738488.0801 661668.0999 785286.1588 726328.0893 818577.0232 916552.1745 872987.3214 756867.47 997164.2412 0.861370258 0.74058821 0.663549767 0.787519374 0.728393638 0.820904912 0.919158687 0.875469943 0.759019867 1 19.92747162 -6.492113854 4.327289687 0.877900017 0.752801099 0.420783587 0.072511365 0.219748831 9.500546357 0.027027074 0.022460652 3.22E-07 6.492113854 -0.125098918 SLSS(ph)PTVTLSAPLEGAK ddPTM_HeLa_A486_30min_R1 2 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.016)LS(0.325)S(0.658)PTVTLSAPLEGAK;SLS(0.328)S(0.671)PT(0.001)VTLSAPLEGAK ; 383.26 2.50E-135 1452180000 991840 1029180 604960 416043 1082770 1050740 1294510 1241890 835910 1424370 TRUE FALSE FALSE 922317.1379 947624.0286 839216.7134 968569.1296 946958.8902 921110.3819 970609.9061 959138.7573 908367.3518 1067698.481 0.863836705 0.887538987 0.786005346 0.907156044 0.886916023 0.862706465 0.909067423 0.898323613 0.850771419 1 20.02607286 -14 0.218278668 1.632125636 0.857208711 0.557559488 0.034175771 113.6526196 1.136921702 31.57946338 0.066550999 1.00E-14 14 -0.774916925 SLSS(ph)S(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_A485_30min_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 2 0 S(0.286)LS(0.671)S(0.532)S(0.51)PQAQPPRPAELSDEEVAELFQR 65.301 0.016017 500170000 22760 26703 25229 25443 30854 24571 33797 34150 25285 34258 TRUE FALSE FALSE 27822.88348 29825.68356 34562.25697 26832.88666 27782.06743 25857.49957 26575.99485 25774.65895 30359.46757 25718.11107 1.081840085 1.15971517 1.343887849 1.043345936 1.080253031 1.005419857 1.033357185 1.002198757 1.18047035 1 14.65049706 -5.382653294 20.96960598 1.04816907 1.19200659 0.421400582 0.07828513 4.918265192 829.7803002 0.021886422 0.032462802 4.14E-06 5.382653294 0.14383752 SLSS(ph)SPDKR ddPTM_HeLa_A486_30min_R1 1 SLSSSPDKR 9 1 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 Q9BVI0 PHF20 PHD finger protein 20 1 0 SLS(0.055)S(0.472)S(0.472)PDKR 98.254 0.00154 0 171040 158050 97278 95978 172170 190330 230550 209380 150900 256120 TRUE FALSE FALSE 159050.9793 145525.5424 134946.6468 223441.6345 150574.8332 166849.0197 172863.9515 161708.7447 163980.1335 191985.8849 0.828451421 0.758001258 0.702898793 1.163844074 0.784301581 0.869069202 0.900399274 0.842294968 0.854125987 1 17.55064072 -2.70355527 0.025480098 1.565891858 2.17E-15 0.13305331 0.115818013 3194.689965 8.558114828 198.4130336 344.9476897 0.001978995 2.70355527 -1.565891858 SLSS(ph)SPQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_A486_30min_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 S(0.101)LS(0.095)S(0.402)S(0.402)PQAQPPRPAELS(0.001)DEEVAELFQR 44.317 0.028894 35868000 28361 31311 25275 15534 39677 35733 41109 39029 24389 40452 TRUE FALSE FALSE 26373.04036 28829.80233 35062.15689 36163.93704 34700.34069 31324.62577 30823.09339 30142.9487 26503.05816 30322.5559 0.869749913 0.950770853 1.156306118 1.19264145 1.144373871 1.033047012 1.016507101 0.994076779 0.874037738 1 14.88810374 -7.154465466 1.800356619 0.94185336 1.067266947 0.186559366 0.096162825 0.658554003 4.022768659 0.074838704 0.032713825 7.01E-08 7.154465466 0.125413587 SLSSDS(ph)TLLLFK ddPTM_HeLa_A485_30min_R1 1 SLSSDSTLLLFK 12 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4 Q9HAW4-2 CLSPN Claspin 1 0 SLS(0.001)SDS(0.836)T(0.163)LLLFK 159.5 6.03E-09 72448000 235510 185940 121960 214420 229200 282830 451560 449600 172640 352250 TRUE FALSE FALSE 287898.387 207684.0655 167078.0792 226133.2217 206380.0432 297638.5415 355080.5171 339334.8951 207287.2645 264440.5577 1.088707381 0.785371455 0.631817149 0.855138197 0.780440206 1.125540439 1.342761187 1.283218044 0.783870925 1 18.01258394 -6.267614696 21.95376197 1.139509556 0.816486088 0.370454941 0.178904643 92.54760069 329011.2052 0.063127378 0.057263989 5.40E-07 6.267614696 -0.323023469 SLSSPT(ph)VTLSAPLEGAK ddPTM_HeLa_A485_30min_R1 1 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.223)LS(0.223)S(0.223)PT(0.297)VT(0.032)LSAPLEGAK 134.9 9.76E-06 63153000 93172 97291 69273 104610 106920 119740 159690 162390 88067 169730 TRUE FALSE FALSE 113897.79 108668.3361 94899.96539 110324.5794 96274.66938 126009.4012 125570.927 122563.5979 105741.2391 127419.4346 0.89388083 0.852839572 0.744784072 0.865837929 0.755572881 0.988933922 0.985492733 0.961890925 0.829867433 1 16.95922582 -6.269772647 24.99071449 0.952871172 0.822344856 0.527600358 0.061814432 519.4137262 1557671.115 0.021641087 0.019397561 5.37E-07 6.269772647 -0.130526315 SLSSPT(ph)VTLSAPLEGAK ddPTM_HeLa_A486_30min_R1 1 SLSSPTVTLSAPLEGAK 17 0 Q96PU5-9;Q96PU5-6;Q96PU5-5;A0A1B0GVY1;Q96PU5-4;Q96PU5-2;Q96PU5-7;Q96PU5 Q96PU5-9 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.229)LS(0.229)S(0.229)PT(0.31)VT(0.003)LSAPLEGAK 150.68 5.91E-08 74559000 210490 229960 156550 97518 258230 236310 297390 261300 203800 291040 TRUE FALSE FALSE 195735.738 211737.1321 217170.3526 227026.8323 225840.3855 207156.4748 222979.8765 201807.6941 221465.5481 218161.6896 0.897204905 0.970551394 0.995455952 1.040635653 1.03519727 0.949554778 1.022085394 0.925037272 1.015144082 1 17.73503825 -4.293418936 2.411213029 0.997037885 0.87828412 0.439451678 0.03431125 0.487139536 3.665865644 0.009127625 0.116840612 5.09E-05 4.293418936 -0.118753765 SLSSS(ph)LDDTEVKK ddPTM_HeLa_A485_30min_R1 2 SLSSSLDDTEVKK 13 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 1 0 SLS(0.009)S(0.119)S(0.872)LDDTEVKK;S(0.003)LS(0.031)S(0.196)S(0.77)LDDTEVKK ; 170.49 2.55E-12 557690000 476260 320440 156871 615690 275930 398360 571850 728850 316890 1510170 TRUE FALSE FALSE 582202.3939 357912.6705 214904.1108 649323.5857 248457.4404 419217.5136 449669.5759 550098.3947 380486.9163 1133712.412 0.513536227 0.315699702 0.189557871 0.572741005 0.21915385 0.369774124 0.396634606 0.48521864 0.335611494 1 20.11262329 -13.99998673 0.368578145 9.180304407 0.358484314 0.720056873 0.116320168 267.4684307 2.082546382 1740.871971 0.079778649 1.00E-14 13.99998673 -8.821820093 SLSSS(ph)LDDTEVKK ddPTM_HeLa_A486_30min_R1 2 SLSSSLDDTEVKK 13 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 1 0 SLS(0.018)S(0.141)S(0.841)LDDTEVKK;SLSS(0.032)S(0.967)LDDTEVKK ; 190.41 1.07E-17 388120000 600900 493890 227540 206157 494350 607650 670530 588370 507790 950280 TRUE FALSE FALSE 558780.0131 454752.3577 315649.5817 479943.9146 432344.0134 532684.3211 502756.3019 454410.995 551805.6461 712323.7027 0.784446749 0.638406887 0.443126602 0.673772209 0.606948796 0.747812152 0.705797519 0.637927663 0.774655741 1 19.44217347 -8.929049466 0.438446009 1.045923967 0.625925969 0.586769647 0.088136833 2.818618814 0.745612576 0.321184827 0.056110282 1.18E-09 8.929049466 -0.419997998 SLSSS(ph)PDKR ddPTM_HeLa_A486_30min_R1 1 SLSSSPDKR 9 1 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 Q9BVI0 PHF20 PHD finger protein 20 1 0 S(0.076)LS(0.044)S(0.143)S(0.737)PDKR 80.782 0.0045098 787330000 264730 231070 143880 164040 236540 317800 389680 344540 219940 483720 TRUE FALSE FALSE 246173.7941 212759.1717 199594.1892 381893.4101 206870.9476 278593.0672 292177.9424 266095.7633 239004.5763 362593.3635 0.678925261 0.586770727 0.550462886 1.053227799 0.570531533 0.768334711 0.805800579 0.733868267 0.659153201 1 18.46799299 -14 0.159217219 2.005534444 0.640217403 0.27806979 0.139424327 183.952767 1.685696076 59.01262376 0.603646079 1.00E-14 14 -1.365317041 SLSSS(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_A485_30min_R1 2 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 SLS(0.001)S(0.135)S(0.863)PQAQPPRPAELSDEEVAELFQR;SLS(0.004)S(0.029)S(0.967)PQAQPPRPAELSDEEVAELFQR ; 253.09 3.68E-63 1893640000 311094 429266 413485 355750 500760 448020 562510 606130 427611 524910 TRUE FALSE FALSE 380295.787 479464.9246 566450.308 375183.7217 450902.5761 471477.6344 442325.1432 457475.6671 513428.6054 394059.5973 0.965071755 1.216732007 1.437473702 0.952098932 1.1442497 1.196462763 1.122482859 1.160930149 1.302921205 1 18.58805431 -5.288168088 24.96049529 1.135898469 1.207456666 0.061958567 0.14015561 2460.933855 2298127.384 0.039722559 0.058935525 5.15E-06 5.288168088 0.071558196 SLSSS(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_A486_30min_R1 2 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 SLS(0.004)S(0.028)S(0.968)PQAQPPRPAELSDEEVAELFQR;SLSS(0.007)S(0.993)PQAQPPRPAELSDEEVAELFQR ; 278.33 2.42E-77 2640600000 456630 481950 332360 135618 526150 432070 468600 511970 420430 507710 TRUE FALSE FALSE 424622.595 443758.5268 461058.6929 315725.5578 460155.3608 378765.5964 351351.3237 395405.6072 456873.2109 380576.1114 1.115736333 1.166017818 1.211475653 0.82959899 1.209102062 0.995242699 0.923209085 1.038965914 1.2004779 1 18.53782548 SLSSS(ph)PVKK ddPTM_HeLa_A486_30min_R1 1 SLSSSPVKK 9 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 SLSS(0.024)S(0.976)PVKK 120.45 0.00118 739430000 1185500 1078700 454540 478170 958860 1378700 1580700 1552000 908990 1771600 TRUE FALSE FALSE 1102402.572 993219.8834 630550.061 1113203.925 838590.8378 1208610.012 1185192.141 1198643.48 987781.9851 1327979.829 0.830135028 0.747917899 0.474819005 0.8382687 0.631478596 0.910111724 0.892477518 0.902606692 0.743823034 1 20.3408018 -6.270006236 24.90587763 0.883883828 0.701603515 0.400940268 0.113094546 649.1326999 1887177.297 0.038947153 0.034885174 5.37E-07 6.270006236 -0.182280312 SLST(ph)SGESLYHVLGLDK ddPTM_HeLa_A485_30min_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.048)LS(0.048)T(0.319)S(0.319)GES(0.266)LYHVLGLDK 139.9 2.36E-06 53691000 79504 90031 70518 89899 96535 90033 125690 112880 90148 179510 TRUE FALSE FALSE 97189.39051 100559.3423 96605.5427 94809.95473 86923.63645 94746.98866 98835.30471 85196.00301 108239.8767 134761.4606 0.721195734 0.746202526 0.71686328 0.703539085 0.645018509 0.703071844 0.733409272 0.632198572 0.803196078 1 17.04004845 -8.053144006 5.39746619 0.99995416 0.702215866 0.877822352 0.034229521 0.096112764 8.429375436 0.033699821 0.008765435 8.85E-09 8.053144006 -0.297738294 SLST(ph)SGESLYHVLGLDKNATSDDIKK ddPTM_HeLa_A485_30min_R1 1 SLSTSGESLYHVLGLDKNATSDDIKK 26 2 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.002)LS(0.105)T(0.732)S(0.135)GES(0.026)LYHVLGLDKNATSDDIKK 187.98 2.41E-20 1700200000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SLST(ph)SGESLYHVLGLDKNATSDDIKK ddPTM_HeLa_A486_30min_R1 1 SLSTSGESLYHVLGLDKNATSDDIKK 26 2 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.01)LS(0.144)T(0.708)S(0.114)GES(0.023)LYHVLGLDKNATSDDIKK 204.25 2.24E-28 821280000 1809100 660540 276100 80224 931150 631770 1079200 1011600 669580 1464500 TRUE FALSE FALSE 1682291.432 608196.4048 383013.3142 186765.5263 814356.4844 553828.6408 809172.7454 781280.7631 727619.7335 1097779.668 1.532449071 0.554024111 0.348898167 0.170130247 0.741821431 0.504498905 0.73709941 0.711691778 0.662810357 1 20.06615709 -8.617939756 0.792246977 1.003103097 0.620104752 0.074519159 0.340267536 5.878979531 5.356231127 0.395786047 0.120013468 2.41E-09 8.617939756 -0.382998344 SLSTS(ph)GESLYHVLGLDK ddPTM_HeLa_A486_30min_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.002)LS(0.19)T(0.028)S(0.774)GES(0.006)LYHVLGLDK 265.29 5.58E-52 8925200000 2645400 2731300 2243100 170370 3138500 2810000 2908600 2578400 3335500 2457700 TRUE FALSE FALSE 2459971.121 2514861.841 3111688.392 396629.97 2744840.065 2463330.77 2180837.516 1991354.606 3624623.826 1842275.923 1.335289188 1.365084247 1.68904579 0.215293467 1.489918003 1.337112828 1.183773554 1.080920931 1.96747066 1 20.81305772 SLSVLS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SLSVLSPR 8 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 SLSVLS(1)PR;SLSVLS(1)PR;SLSVLS(1)PR ;; 114.45 0.0010259 506240000 497030 673250 631890 514190 879520 610370 710890 826420 565900 646000 TRUE FALSE FALSE 607592.6088 751980.731 865652.4061 542278.8977 791951.9006 642328.0294 559002.5441 623739.1992 679470.9393 484964.0887 1.252861032 1.550590546 1.784982489 1.118183615 1.633011431 1.324485759 1.152667913 1.286155436 1.40107475 1 18.8875184 -6.512368299 20.27602306 1.23449991 1.471507223 0.269885134 0.198834204 61.0127176 117706.5812 0.071270447 0.05897268 3.07E-07 6.512368299 0.237007313 SLSVLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SLSVLSPR 8 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 SLSVLS(1)PR;SLSVLS(1)PR;SLSVLS(1)PR;SLSVLS(1)PR ;;; 126.29 0.00034397 752580000 857330 868060 803250 291767 1058740 820410 877940 927860 717880 831570 TRUE FALSE FALSE 797235.5943 799271.7642 1114289.912 679248.3211 925942.9568 719196.1555 658270.1261 716606.533 780106.4164 623339.4594 1.278975015 1.282241565 1.787613306 1.08969248 1.485455385 1.153779285 1.056037952 1.149624851 1.25149532 1 19.24965852 -6.346980694 6.352981323 1.124813464 1.38465156 0.35160415 0.178496163 0.289167884 17.7290917 0.062085626 0.054651139 4.50E-07 6.346980694 0.259838097 SLSYS(ph)PVER ddPTM_HeLa_A485_30min_R1 5 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLSYS(1)PVER;SLS(0.033)YS(0.967)PVER;SLSYS(1)PVER;SLSYS(1)PVER;SLS(0.071)YS(0.929)PVER ;;;; 220.17 4.94E-12 4645630000 2454640 3452400 3275690 2499230 3648590 3033690 3473760 3776610 2606410 3275510 TRUE FALSE FALSE 3000666.2 3856128.148 4487504.044 2635756.607 3285323.569 3192529.317 2731562.798 2850390.476 3129492.58 2458985.638 1.220286183 1.568178394 1.824941136 1.07188776 1.336048295 1.298311494 1.110849431 1.159173291 1.272676233 1 21.22963188 -5.279047182 24.99397428 1.193800913 1.540839586 0.488621006 0.167956959 684.2793804 971321.2287 0.047455279 0.070556608 5.26E-06 5.279047182 0.347038673 SLSYS(ph)PVER ddPTM_HeLa_A486_30min_R1 4 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLSYS(1)PVER;SLSYS(1)PVER;SLSYS(1)PVER;SLSYS(1)PVER ;;; 220.17 4.94E-12 4427930000 2749850 2885310 2432830 862075 3181130 2358980 2636100 2800220 2164790 2490330 TRUE FALSE FALSE 2557099.715 2656667.527 3374886.929 2006954.167 2782123.013 2067953.032 1976519.898 2162671.034 2352435.74 1866735.159 1.369824586 1.423162528 1.807908805 1.07511457 1.490368358 1.107791334 1.058811095 1.158531259 1.260187193 1 20.83208583 -5.898034127 1.211152989 1.123304949 1.492147408 0.417809714 0.181427137 0.455190846 1.40850797 0.077108504 0.097510619 1.26E-06 5.898034127 0.368842459 SLT(ph)HPPTIAPEGSRPQGGLPSSK ddPTM_HeLa_A486_30min_R1 1 SLTHPPTIAPEGSRPQGGLPSSK 23 1 Q7Z333-3;Q7Z333;Q7Z333-4;X6RI79 Q7Z333-3 SETX Probable helicase senataxin 1 0 S(0.136)LT(0.864)HPPTIAPEGSRPQGGLPSSK 136.53 1.27E-06 162360000 222850 281150 223000 18567 338290 308280 341880 324400 296020 228000 TRUE FALSE FALSE 207229.3658 258870.6501 309351.5721 43224.91432 295858.5138 270247.548 256338.008 250541.2016 321679.2519 170907.316 1.212524839 1.514684428 1.810054592 0.252914359 1.731105027 1.581252075 1.499865623 1.465947787 1.882185383 1 17.38285463 SLT(ph)NDWEDHLAVK ddPTM_HeLa_A485_30min_R1 1 SLTNDWEDHLAVK 13 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 1 0 S(0.43)LT(0.57)NDWEDHLAVK 120.9 0.00010171 54451000 77236 63643 46261 95195 81593 59798 87971 81814 65280 122630 TRUE FALSE FALSE 94416.88174 71085.49523 63374.86898 100395.2618 73469.31443 62928.93081 69175.27719 61748.98822 78381.09722 92060.59784 1.025594923 0.772159826 0.688403839 1.090534541 0.798053849 0.683559876 0.751410254 0.670742855 0.851407649 1 16.49029619 -5.984074905 24.97896929 0.765284879 0.87995195 0.09684137 0.138630703 499.1850362 782981.7967 0.042264636 0.047911056 1.04E-06 5.984074905 0.114667071 SLT(ph)PALCRT(ph)PANK ddPTM_HeLa_A485_30min_R1 1 SLTPALCRTPANK 13 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 2 0 S(0.157)LT(0.843)PALCRT(1)PANK 58.09 0.00445 0 123310 108640 92959 173110 205440 137950 200060 198730 124040 239180 TRUE FALSE FALSE 150739.8841 121344.503 127348.4024 182566.561 184985.6723 145172.8487 157315.5467 149991.1559 148933.6902 179556.8278 0.839510733 0.675799993 0.709237315 1.016762009 1.030234687 0.808506424 0.876132357 0.835340865 0.829451556 1 17.45408099 -5.242322125 24.88968233 0.90581242 0.73494439 0.458552553 0.085382458 755.9550291 984213.2067 0.024556407 0.04244768 5.72E-06 5.242322125 -0.17086803 SLT(ph)PALCRT(ph)PANK ddPTM_HeLa_A486_30min_R1 1 SLTPALCRTPANK 13 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 2 0 S(0.467)LT(0.533)PALCRT(1)PANK 58.09 0.027441 113370000 216560 261080 162590 133900 327740 282720 352210 375040 189860 282410 TRUE FALSE FALSE 201380.2623 240391.07 225549.2023 311725.9669 286631.7931 247840.8809 264083.3327 289651.5791 206317.2177 211692.6978 0.951285823 1.135566188 1.065455751 1.472540008 1.353999435 1.170757818 1.247484374 1.368264385 0.974607154 1 17.69161198 -5.054837325 24.99594622 1.247748588 1.057696353 0.208101273 0.153507214 409.5363459 186674.1661 0.040581666 0.070289994 8.81E-06 5.054837325 -0.190052235 SLT(ph)PPPSSTESK ddPTM_HeLa_A485_30min_R1 1 SLTPPPSSTESK 12 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 S(0.001)LT(0.898)PPPS(0.076)S(0.02)T(0.006)ESK 80.102 0.029795 615810000 333040 303030 238370 459080 410710 326340 521670 519260 290640 578730 TRUE FALSE FALSE 407123.599 338466.7225 326552.9824 484158.3779 369818.2703 343426.6578 410210.9428 391910.6708 348968.7821 434463.2617 0.937072556 0.779045669 0.751623926 1.114382781 0.851207232 0.790461906 0.944178666 0.902057102 0.803218161 1 18.72887466 -11.6400115 2.146642922 3.955206169 0.875079452 0.119463289 0.101965456 3236792.42 353528.7371 46476000.31 0.025848516 2.29E-12 11.6400115 -3.080126718 SLT(ph)PPPSSTESK ddPTM_HeLa_A486_30min_R1 3 SLTPPPSSTESK 12 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 SLT(0.957)PPPS(0.014)S(0.024)T(0.005)ESK;SLT(1)PPPSSTESK;S(0.001)LT(0.992)PPPS(0.006)S(0.001)TESK ;; 125.82 0.00019841 1036350000 1095270 1064620 559800 466620 1057430 1165890 1386030 1294990 812070 1424120 TRUE FALSE FALSE 1018497.229 980255.6339 776569.552 1086314.942 924797.2693 1022054.346 1039230.634 1000149.046 882460.8814 1067511.083 0.95408586 0.918262723 0.72745807 1.017614673 0.866311633 0.957418019 0.973508052 0.936898045 0.826652665 1 20.02581962 SLT(ph)QPITTEEVVIAATLQASAHQK ddPTM_HeLa_A485_30min_R1 3 SLTQPITTEEVVIAATLQASAHQK 24 0 O95425-4 O95425-4 SVIL Supervillin 1 0 S(0.035)LT(0.964)QPITTEEVVIAATLQASAHQK;S(0.001)LT(0.999)QPITTEEVVIAATLQASAHQK;S(0.183)LT(0.81)QPIT(0.003)T(0.005)EEVVIAATLQASAHQK ;; 291.62 4.89E-89 383043000 240193 192040 163778 162404 328356 229968 426722 446255 187577 252809 TRUE FALSE FALSE 293623.1042 214497.4075 224366.2976 171275.7193 295663.7237 242008.7689 335549.3587 336810.2615 225221.9833 189788.3689 1.547108002 1.130192586 1.182192032 0.902456353 1.557860081 1.275150686 1.76801856 1.774662291 1.186700664 1 17.53403205 -5.791088264 24.96689271 1.475250485 1.185587621 0.138979353 0.272999934 324.7353172 273453.1072 0.083728207 0.094951926 1.62E-06 5.791088264 -0.289662865 SLT(ph)QPITTEEVVIAATLQASAHQK ddPTM_HeLa_A486_30min_R1 3 SLTQPITTEEVVIAATLQASAHQK 24 0 O95425-4 O95425-4 SVIL Supervillin 1 0 S(0.019)LT(0.98)QPIT(0.001)TEEVVIAATLQASAHQK;S(0.007)LT(0.993)QPITTEEVVIAATLQASAHQK;S(0.134)LT(0.721)QPIT(0.045)T(0.099)EEVVIAATLQASAHQK ;; 244.13 6.21E-49 542024000 314635 406614 366916 57613.5 474098 500071 654426 569362 396114 280479 TRUE FALSE FALSE 292580.7113 374392.4258 508995.7016 134127.1396 414632.2081 438377.3244 490681.693 439730.7017 430449.4805 210245.2328 1.391616387 1.780741569 2.420961916 0.637955676 1.972136074 2.085076168 2.333854074 2.091513305 2.047368565 1 17.68171356 -5.959428058 24.99981326 2.0086713 1.594101641 0.087142162 0.530198771 326.5226033 201196.878 0.160399644 0.181875902 1.10E-06 5.959428058 -0.414569659 SLT(ph)RS(ph)PPAIR ddPTM_HeLa_A485_30min_R1 1 SLTRSPPAIR 10 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.363)LT(0.648)RS(0.989)PPAIR 53.377 0.037135 102270000 98706 112840 101720 120650 116870 97536 116370 118620 102630 251230 TRUE FALSE FALSE 120662.8092 126035.6564 139350.4609 127240.804 105234.0124 102642.8341 91506.59884 89528.25901 123226.8996 188602.9845 0.639771473 0.668259077 0.738856075 0.674648942 0.557965786 0.544226988 0.485181075 0.474691635 0.653366647 1 17.52499298 -8.034006285 23.5124801 1.000000002 0.598374978 0.689252814 0.080514253 1572.518585 1087262.903 0.090827693 0.02345161 9.25E-09 8.034006285 -0.401625024 SLTAHS(ph)LLPLAEK ddPTM_HeLa_A485_30min_R1 1 SLTAHSLLPLAEK 13 0 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 0 S(0.26)LT(0.26)AHS(0.48)LLPLAEK 95.428 0.00086322 57404000 54362 56921 50608 74999 78056 74301 93913 90249 63401 115970 TRUE FALSE FALSE 66454.63935 63577.4158 69330.00517 79096.00546 70284.47057 78191.28547 73847.72035 68115.29125 76124.99915 87060.81327 0.763312871 0.730264437 0.796339967 0.908514434 0.80730317 0.898122617 0.848231455 0.782387491 0.87438879 1 16.40973588 -14 0.02651608 2.040565554 0.078536564 0.587505421 0.049387985 1497.297735 2.98863217 164.0486141 73.68583182 1.00E-14 14 -1.96202899 SLTAHS(ph)LLPLAEK ddPTM_HeLa_A486_30min_R1 2 SLTAHSLLPLAEK 13 0 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 0 S(0.258)LT(0.258)AHS(0.483)LLPLAEK;S(0.191)LT(0.191)AHS(0.619)LLPLAEK ; 137.59 5.38E-06 44943000 280340 341010 215978 139118 380310 378370 447550 472480 297630 367810 TRUE FALSE FALSE 260689.6137 313987.1257 299610.4657 323873.7346 332607.9736 331690.5564 335568.2563 364906.6182 323428.808 275707.982 0.945527989 1.138839447 1.086694928 1.174698434 1.206377745 1.203050249 1.217114767 1.323525767 1.173084674 1 18.07278151 -3.124998956 0.681367251 1.204931413 1.24E-09 0.41516938 0.080241661 10.91364678 1.186735562 0.031333613 14.47559108 0.000749896 3.124998956 -1.204931412 SLTDPSQESHTEAIS(ph)DAETSSSDISFSGIATR ddPTM_HeLa_A485_30min_R1 2 SLTDPSQESHTEAISDAETSSSDISFSGIATR 32 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 SLTDPSQESHTEAIS(0.999)DAETSSSDISFSGIATR;SLTDPSQESHTEAIS(1)DAETSSSDISFSGIATR ; 336.87 5.76E-128 1910330000 155651 228378 213945 149445 271531 203850 219771 231514 241606 214315 TRUE FALSE FALSE 190275.028 255084.8205 293092.1585 157608.8019 244496.4202 214523.2708 172815.1305 174734.8285 290094.1081 160890.2147 1.182638909 1.585458886 1.821690394 0.979604647 1.519647548 1.333351884 1.074118341 1.086050067 1.803056256 1 17.29571706 -5.261325469 24.99999112 1.266693928 1.535482325 0.165324369 0.28076469 18.98364351 4165884.334 0.076398831 0.122259023 5.48E-06 5.261325469 0.268788397 SLTDPSQESHTEAIS(ph)DAETSSSDISFSGIATR ddPTM_HeLa_A486_30min_R1 2 SLTDPSQESHTEAISDAETSSSDISFSGIATR 32 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 SLTDPSQESHTEAIS(1)DAETSSSDISFSGIATR;SLTDPSQESHTEAIS(1)DAETSSSDISFSGIATR ; 358.31 2.44E-148 1815320000 364260 384670 351980 109137 453160 315450 384160 370630 344470 328450 TRUE FALSE FALSE 338727.255 354187.3483 488276.0824 254076.4515 396320.4473 276532.9863 288039.1048 286245.6398 374328.937 246203.9821 1.375799254 1.438593093 1.983217648 1.031975394 1.609723952 1.123186489 1.169920577 1.162636109 1.520401635 1 17.90949457 -5.740716422 1.37680128 1.219929366 1.546633041 0.217061486 0.257649794 0.653560292 2.588350836 0.096414175 0.137895123 1.82E-06 5.740716422 0.326703675 SLTEISTDFDRSS(ph)PPLQPPPVNSLTTENR ddPTM_HeLa_A485_30min_R1 2 SLTEISTDFDRSSPPLQPPPVNSLTTENR 29 1 J3KRR7;Q9NQC7-2;Q9NQC7 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 1 0 SLTEISTDFDRS(0.167)S(0.833)PPLQPPPVNSLTTENR;SLTEISTDFDRS(0.14)S(0.86)PPLQPPPVNSLTTENR ; 144.45 1.74E-09 1504030000 62021 92834 84184 77970 109277 94081 125706 101738 77626 96063 TRUE FALSE FALSE 75817.35748 103690.1288 115327.1648 82229.30367 98396.99819 99006.93568 98847.88618 76786.59598 93204.82617 72116.26201 1.051321233 1.437818959 1.599183895 1.140232472 1.364421775 1.372879472 1.370674012 1.064761177 1.292424532 1 16.138037 -7.943223352 0.74147326 1.009811247 1.346365389 0.262489881 0.159822017 0.904637132 1.148068403 0.154574459 0.060422637 1.14E-08 7.943223352 0.336554142 SLTLLPHGTPNSAS(ph)PCSQR ddPTM_HeLa_A485_30min_R1 2 SLTLLPHGTPNSASPCSQR 19 0 Q9BXB5 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 SLTLLPHGTPNS(0.002)AS(0.997)PCS(0.001)QR;SLTLLPHGTPNS(0.078)AS(0.922)PCSQR ; 218.47 9.29E-35 1206880000 354770 688670 680320 150054 685740 419160 546530 564140 446260 387200 TRUE FALSE FALSE 433687.3626 769203.9659 931998.6785 158251.0701 617465.3178 441106.5695 429759.4008 425783.7805 535820.2887 290678.1659 1.491984653 2.64623923 3.206290626 0.544420217 2.124223249 1.517508438 1.478471558 1.464794506 1.843345499 1 18.14906318 -5.254436445 24.99311831 1.47930367 2.467978211 0.406217554 0.564207785 560.8255415 2001552.785 0.150081199 0.252925418 5.57E-06 5.254436445 0.988674541 SLTLLPHGTPNSAS(ph)PCSQR ddPTM_HeLa_A486_30min_R1 2 SLTLLPHGTPNSASPCSQR 19 0 Q9BXB5 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 SLTLLPHGTPNS(0.141)AS(0.859)PCSQR;SLTLLPHGTPNS(0.003)AS(0.997)PCSQR ; 212.82 2.18E-26 1388880000 599000 640030 611170 16762.5 719570 375870 439370 388960 508180 210344 TRUE FALSE FALSE 557013.1932 589311.6919 847831.3917 39023.94713 629314.8209 329498.981 329434.9788 300402.2989 552229.4516 157672.4933 3.532722681 3.737568168 5.377167406 0.247500032 3.991278426 2.089768317 2.089362399 1.905229585 3.502382946 1 17.26657147 -5.246720251 24.99998898 2.231341734 4.167994175 0.425218413 1.111856288 809.971146 1375709.203 0.286701613 0.493925746 5.67E-06 5.246720251 1.936652441 SLTNDWEDHLAVK ddPTM_HeLa_A485_30min_R1 2 SLTNDWEDHLAVK 13 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 0 ; ; 180.3 1.61E-16 210400000 17605 18465 17411 19239 27521 19876 25797 26724 20999 29990 FALSE FALSE TRUE 21521.17151 20624.32113 23852.05343 20289.97785 24780.91261 20916.67663 20285.26021 20169.8971 25213.30669 22514.04493 0.955899821 0.91606467 1.059429947 0.901214239 1.100686824 0.929050142 0.901004696 0.895880645 1.11989235 1 14.45853766 -6.742187432 0.004520756 1.951318472 5.21E-07 0.022668573 0.081275166 54802.71887 146.946296 31483.00126 31935.41582 1.81E-07 6.742187432 -1.951317951 SLTNDWEDHLAVK ddPTM_HeLa_A486_30min_R1 2 SLTNDWEDHLAVK 13 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 0 ; ; 150.26 2.12E-07 289500000 414840 440490 273355 150549 518200 442730 522470 495490 365986 466890 FALSE FALSE TRUE 385761.8582 405583.9682 379205.3767 350485.6803 453202.524 388110.4739 391742.4799 382677.7435 397709.9612 349977.7051 1.102246951 1.158885158 1.083512953 1.00145145 1.294946842 1.108957709 1.11933553 1.093434633 1.136386562 1 18.41690349 -10.28974998 2.746066389 0.998632308 1.122294052 0.215472958 0.06991049 6917171.508 8146636.792 78219.27348 0.018809971 5.13E-11 10.28974998 0.123661744 SLTNPT(ph)PIQQQLR ddPTM_HeLa_A485_30min_R1 2 SLTNPTPIQQQLR 13 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 SLTNPT(1)PIQQQLR;SLT(0.001)NPT(0.999)PIQQQLR ; 201.57 8.54E-21 529950000 658420 579210 572700 615130 886050 603020 759330 757880 507600 772430 TRUE FALSE FALSE 804883.2575 646943.571 784565.562 648732.9943 797831.7509 634593.1948 597092.9423 572008.7417 609470.664 579877.4165 1.388023114 1.115655745 1.352985199 1.11874161 1.375862774 1.094357491 1.029688216 0.986430451 1.051033627 1 19.14538843 -6.465215613 4.973316928 1.020358408 1.25762626 0.637911447 0.090787207 0.134584252 6.960594792 0.030576412 0.026195898 3.43E-07 6.465215613 0.237267853 SLTNPT(ph)PIQQQLR ddPTM_HeLa_A486_30min_R1 4 SLTNPTPIQQQLR 13 0 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 SLTNPT(1)PIQQQLR;SLTNPT(1)PIQQQLR;SLTNPT(1)PIQQQLR;SLTNPT(1)PIQQQLR ;;; 270.99 9.56E-48 632920000 1075130 1348550 1065860 546100 1474840 1257540 1537370 1584130 957730 1155320 TRUE FALSE FALSE 999768.939 1241685.987 1478589.537 1271348.398 1289851.815 1102397.501 1152703.765 1223458.18 1040746.808 866020.3521 1.154440466 1.433783841 1.707338093 1.468035243 1.489401273 1.272946413 1.331035423 1.41273606 1.201757909 1 19.7240414 -8.162163234 0.589073264 0.99090993 1.451514045 0.468526522 0.138503849 0.98303147 0.764257155 0.161607577 0.066631226 6.88E-09 8.162163234 0.460604115 SLTS(ph)SLENIFSR ddPTM_HeLa_A486_30min_R1 1 SLTSSLENIFSR 12 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 SLT(0.015)S(0.822)S(0.163)LENIFSR 314.45 1.35E-60 1085800000 1572600 1761700 1334200 543210 1905700 1473600 1572900 1823000 1404200 1757100 TRUE FALSE FALSE 1462368.861 1622096.476 1850837.971 1264620.332 1666669.336 1291802.214 1179343.784 1407942.696 1525917.187 1317110.723 1.110285442 1.231556655 1.405225801 0.960147321 1.265398046 0.980784828 0.895402158 1.06896305 1.158533721 1 20.3289452 -5.273956538 24.99798334 1.049926478 1.247276044 0.376530271 0.11906254 817.9821879 1633587.921 0.034414574 0.051449995 5.32E-06 5.273956538 0.197349566 SLTSS(ph)LENIFSR ddPTM_HeLa_A485_30min_R1 7 SLTSSLENIFSR 12 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 SLTS(0.007)S(0.993)LENIFSR;SLTS(0.007)S(0.993)LENIFSR;SLTS(0.064)S(0.936)LENIFSR;SLT(0.001)S(0.182)S(0.817)LENIFSR;SLTS(0.004)S(0.996)LENIFSR;SLTS(0.004)S(0.996)LENIFSR;SLT(0.006)S(0.232)S(0.762)LENIFSR ;;;;;; 287.48 1.57E-41 2914214000 1729490 2245693 2304430 1729339 2559163 2187846 2730290 2902284 2117568 2531810 TRUE FALSE FALSE 2114209.084 2508307.261 3156934.552 1823808.411 2304363.746 2302398.234 2146941.237 2190494.298 2542544.474 1900676.362 1.112345651 1.319691933 1.660953236 0.95955758 1.212391437 1.211357325 1.129566969 1.152481476 1.337705106 1 20.85808147 -5.28128155 24.99943431 1.154790722 1.359866526 0.283965162 0.160070886 1094.619286 1379124.068 0.04488665 0.066680917 5.23E-06 5.28128155 0.205075804 SLTSS(ph)LENIFSR ddPTM_HeLa_A486_30min_R1 6 SLTSSLENIFSR 12 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 SLTS(0.004)S(0.996)LENIFSR;SLT(0.001)S(0.171)S(0.829)LENIFSR;SLTS(0.028)S(0.972)LENIFSR;SLTS(0.018)S(0.982)LENIFSR;SLT(0.001)S(0.204)S(0.794)LENIFSR;SLTS(0.182)S(0.818)LENIFSR ;;;;; 287.48 1.57E-41 2073668000 3696650 3752760 3075370 1165707 4189050 3384840 3720680 3824010 3288070 4170780 TRUE FALSE FALSE 3437533.925 3455377.63 4266235.625 2713824.808 3663620.288 2967252.855 2789726.511 2953366.401 3573082.555 3126389.541 1.09952195 1.105229398 1.364588632 0.868037963 1.171837431 0.949098894 0.892315713 0.944657203 1.142878233 1 21.57606612 -5.272388039 24.95628925 0.994349403 1.181324944 0.377011609 0.11425629 746.8169286 1702287.455 0.031968426 0.047962782 5.34E-06 5.272388039 0.18697554 SLTTECHLLDS(ph)PGLNCSNPFTQLER ddPTM_HeLa_A485_30min_R1 4 SLTTECHLLDSPGLNCSNPFTQLER 25 0 Q15398-1;Q15398 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER ;;; 227.59 1.55E-38 678150000 160276 204344 188547 147512 240055 158828 199046 198229 172770 190630 TRUE FALSE FALSE 195928.8433 228240.2532 258298.3814 155570.207 216154.2813 167143.9885 156518.196 149613.0269 207443.3543 143109.4493 1.369083902 1.59486501 1.804900953 1.087071523 1.510412362 1.167945159 1.093695747 1.045444782 1.449543376 1 17.12675941 -5.735748127 1.155921416 1.154639678 1.566914737 0.389882966 0.202469822 0.491251416 1.387148045 0.083515613 0.126927339 1.84E-06 5.735748127 0.412275059 SLTTECHLLDS(ph)PGLNCSNPFTQLER ddPTM_HeLa_A486_30min_R1 3 SLTTECHLLDSPGLNCSNPFTQLER 25 0 Q15398-1;Q15398 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER ;; 198.06 2.03E-28 387775000 76461 99236 88358 18003.4 109120 77470 100495 97088 90304 87150 TRUE FALSE FALSE 71101.47875 91372.17795 122572.5839 41912.82504 95433.1521 67912.53906 75350.08807 74983.18182 98131.62343 65327.07275 1.088392235 1.398687774 1.876290774 0.641584312 1.460851498 1.039577256 1.153428202 1.147811752 1.502158589 1 15.99539337 -5.251524232 24.99011336 1.151579304 1.448879934 0.203758229 0.287982502 1188.399822 2995234.161 0.075959313 0.129519693 5.60E-06 5.251524232 0.29730063 SLTVSDDAESS(ph)EPER ddPTM_HeLa_A485_30min_R1 2 SLTVSDDAESSEPER 15 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 SLTVSDDAES(0.011)S(0.989)EPER;SLTVSDDAES(0.078)S(0.922)EPER ; 312.04 6.93E-78 819870000 476140 609380 565980 512050 792590 571870 643390 723350 544970 633810 TRUE FALSE FALSE 582055.7003 680641.6901 775359.5544 540021.9949 713676.9566 601812.2289 505924.4705 545947.2783 654340.4802 475812.8314 1.223287103 1.430481999 1.629547383 1.134946263 1.49991112 1.264808742 1.06328463 1.147399234 1.375205621 1 18.86003465 -6.515554621 8.065986874 1.159168899 1.385913346 0.3367857 0.156562787 0.160915546 87.79408952 0.056727011 0.046629998 3.05E-07 6.515554621 0.226744447 SLTVSDDAESS(ph)EPER ddPTM_HeLa_A486_30min_R1 1 SLTVSDDAESSEPER 15 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 SLTVSDDAES(0.006)S(0.994)EPER 332.39 4.57E-120 0 342430 385660 325340 136300 424950 381160 394470 383430 370740 372760 TRUE FALSE FALSE 318427.4253 355098.8971 451320.3609 317313.2882 371648.8085 334136.3546 295769.4337 296131.3592 402876.0417 279418.4697 1.139607649 1.270849767 1.615213058 1.135620306 1.330079607 1.195827731 1.058517835 1.059813116 1.44183755 1 18.09206786 -6.410332276 4.201731385 1.142836862 1.304903707 0.167349865 0.166811677 0.435399517 12.9616432 0.061234129 0.052969527 3.89E-07 6.410332276 0.162066845 SLTWPPS(ph)GSPSHAGTTPPENGLSEHPCETEQINAK ddPTM_HeLa_A485_30min_R1 3 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 S(0.001)LT(0.001)WPPS(0.436)GS(0.436)PS(0.126)HAGTTPPENGLSEHPCETEQINAK;SLTWPPS(0.554)GS(0.438)PS(0.007)HAGTTPPENGLSEHPCETEQINAK;S(0.001)LT(0.001)WPPS(0.482)GS(0.426)PS(0.09)HAGTTPPENGLSEHPCETEQINAK ;; 229.31 5.83E-40 1324680000 222715 275428 264408 170522 370858 247829 388131 393232 269791 314044 TRUE FALSE FALSE 272257.1834 307636.9087 362223.5221 179837.1851 333934.0754 260804.9432 305203.6411 296791.2354 323935.579 235758.6104 1.154813319 1.304880904 1.536416938 0.762802193 1.416423667 1.106237193 1.294559892 1.258877608 1.374013779 1 17.84695094 SLTWPPS(ph)GSPSHAGTTPPENGLSEHPCETEQINAK ddPTM_HeLa_A486_30min_R1 2 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 SLTWPPS(0.489)GS(0.489)PS(0.021)HAGTTPPENGLSEHPCETEQINAK;S(0.003)LT(0.003)WPPS(0.488)GS(0.488)PS(0.016)HAGT(0.001)TPPENGLSEHPCETEQINAK ; 279.31 9.84E-79 860000000 269631 294666 205258 25384.5 336957 243041 286983 276101 248892 170961 TRUE FALSE FALSE 250731.2593 271315.593 284739.3946 59096.39886 294692.7111 213057.0725 215176.818 213238.8295 270466.159 128151.2528 1.956526009 2.117151312 2.221900983 0.461145697 2.29956949 1.662543813 1.679084779 1.663962114 2.110522941 1 16.96748806 -10.97584293 2.919188836 0.334449918 1.783017047 0.185913296 0.499528816 317403884.9 292894678.2 1430878287 0.121535197 1.06E-11 10.97584293 1.448567129 SLTWPPSGS(ph)PSHAGTTPPENGLSEHPCETEQINAK ddPTM_HeLa_A485_30min_R1 1 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 SLTWPPS(0.125)GS(0.75)PS(0.125)HAGTTPPENGLSEHPCETEQINAK 257.16 1.46E-64 700100000 260840 284260 294080 189710 397670 243650 393640 379480 273520 359540 TRUE FALSE FALSE 318862.9581 317501.7343 402872.4297 200073.3769 358076.5785 256407.1372 309535.5983 286411.935 328412.9551 269913.2948 1.181353287 1.176310098 1.492599429 0.741250545 1.326635573 0.949961125 1.146796413 1.061125704 1.216735009 1 18.04213651 -5.238414656 24.98438185 1.075501265 1.272709788 0.258899378 0.169552307 1170.979325 1270641.346 0.043060622 0.074520459 5.78E-06 5.238414656 0.197208523 SLTWPPSGS(ph)PSHAGTTPPENGLSEHPCETEQINAK ddPTM_HeLa_A486_30min_R1 1 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 SLT(0.001)WPPS(0.088)GS(0.456)PS(0.456)HAGTTPPENGLSEHPCETEQINAK 177.1 1.94E-15 592710000 142280 175990 117810 8990.6 180400 146810 157390 149920 144820 100580 TRUE FALSE FALSE 132306.9067 162043.9115 163429.1871 20930.57116 157772.5498 128698.0749 118009.3573 115786.4887 157373.1142 75394.11333 1.754870518 2.149291295 2.167665085 0.277615456 2.092637513 1.707004289 1.565233041 1.535749724 2.087339545 1 16.20216426 -10.94304792 2.684314363 0.513773597 1.691394583 0.137184817 0.528909977 52471794.43 26139163.78 159329698.5 0.133988994 1.14E-11 10.94304792 1.177620986 SLTWPPSGSPS(ph)HAGTTPPENGLSEHPCETEQINAK ddPTM_HeLa_A485_30min_R1 1 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 S(0.004)LT(0.004)WPPS(0.313)GS(0.313)PS(0.366)HAGTTPPENGLSEHPCETEQINAK 67.062 0.00094787 152800000 28678 30568 26826 28312 45357 34694 36708 35306 32831 42096 TRUE FALSE FALSE 35057.32216 34142.66169 36750.05372 29858.61287 40841.09782 36510.52419 28865.03592 26647.14814 39419.88056 31602.24192 1.109330226 1.080387328 1.16289388 0.94482578 1.292348117 1.155314369 0.913385702 0.843204359 1.247376077 1 14.94773929 -6.750108391 24.9836747 0.987925225 1.123443385 0.183494875 0.126102739 342.5672458 755327.0141 0.047873958 0.036741189 1.78E-07 6.750108391 0.13551816 SLTWPPSGSPS(ph)HAGTTPPENGLSEHPCETEQINAK ddPTM_HeLa_A486_30min_R1 2 SLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAK 35 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 0 S(0.004)LT(0.004)WPPS(0.318)GS(0.318)PS(0.355)HAGTTPPENGLSEHPCETEQINAK;SLTWPPS(0.136)GS(0.153)PS(0.71)HAGTTPPENGLSEHPCETEQINAK ; 102.78 6.02E-05 232775000 84128 84179 70394 12180.9 94927 81809 108388 91810 84181 85237 TRUE FALSE FALSE 78231.06164 77508.34947 97652.44202 28357.75079 83020.3705 71716.23735 81268.17599 70906.8672 91477.87686 63893.1004 1.22440547 1.213094199 1.528372256 0.44383119 1.299363624 1.122441029 1.271939779 1.109773462 1.431733259 1 15.96337253 SLVESVSS(ph)SPNKESNEEEQVWHFLGK ddPTM_HeLa_A486_30min_R1 2 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-4;Q9H2U2-6;Q9H2U2-3;Q9H2U2;Q9H2U2-2 Q9H2U2-4 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 1 0 SLVES(0.004)VS(0.041)S(0.477)S(0.477)PNKESNEEEQVWHFLGK;SLVESVS(0.001)S(0.863)S(0.137)PNKESNEEEQVWHFLGK ; 217.57 2.68E-38 2886360000 983788 841997 428719 542092 793764 1060679 1311380 1327070 746689 1576710 TRUE FALSE FALSE 914829.5415 775274.0912 594730.4783 1262017.572 694202.7176 929823.2092 983258.8536 1024925.131 811412.6037 1181891.553 0.77403848 0.65596043 0.503202241 1.06779473 0.587365834 0.786724642 0.831936611 0.867190503 0.686537273 1 20.17266623 -14 0.100480576 1.783910854 0.586250234 0.215507384 0.148022742 282.6453096 1.926885841 46.45792133 2.41492552 1.00E-14 14 -1.197660619 SLVESVSSS(ph)PNKESNEEEQVWHFLGK ddPTM_HeLa_A485_30min_R1 1 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-4;Q9H2U2-6;Q9H2U2-3;Q9H2U2;Q9H2U2-2 Q9H2U2-4 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 1 0 SLVES(0.001)VS(0.051)S(0.414)S(0.533)PNKESNEEEQVWHFLGK 213.37 2.52E-29 1377500000 802480 657330 409690 1120700 896170 787570 1360100 1340300 656480 1433700 TRUE FALSE FALSE 980988.9075 734199.0255 561251.3796 1181921.003 806944.1682 828805.9474 1069503.524 1011589.323 788229.5144 1076304.975 0.911441394 0.682147758 0.521461289 1.098128347 0.749735611 0.770047492 0.99368074 0.939872384 0.732347738 1 20.0376555 -5.255915436 24.99759076 0.887698881 0.702729927 0.273965691 0.143072879 645.7953931 2922420.716 0.039028283 0.06520232 5.55E-06 5.255915436 -0.184968953 SLVESVSSSPNKES(ph)NEEEQVWHFLGK ddPTM_HeLa_A486_30min_R1 1 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-4;Q9H2U2-6;Q9H2U2-3;Q9H2U2;Q9H2U2-2 Q9H2U2-4 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 1 0 S(0.003)LVES(0.028)VS(0.122)S(0.259)S(0.259)PNKES(0.33)NEEEQVWHFLGK 45.735 0.032684 2323700000 153990 157320 63593 85098 144660 139190 209280 177310 106780 211460 TRUE FALSE FALSE 143196.0962 144853.3903 88217.91268 198112.4446 126515.3939 122018.153 156915.9305 136940.3837 116035.7764 158509.0396 0.903393879 0.913849397 0.556548149 1.249849504 0.798158857 0.769786715 0.989949411 0.863927912 0.732045167 1 17.27420559 SLVGS(ph)WLK ddPTM_HeLa_A485_30min_R1 2 SLVGSWLK 8 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 SLVGS(1)WLK;SLVGS(1)WLK ; 147.74 0.00028461 220910000 411590 436220 328460 510760 568480 440350 662020 623090 372230 669920 TRUE FALSE FALSE 503146.7755 487232.1344 449971.0224 538661.5255 511880.1351 463406.0451 520574.0188 470276.2005 446933.1467 502921.273 1.000448385 0.968803987 0.894714633 1.071065303 1.017813647 0.921428601 1.035100416 0.9350891 0.888674174 1 18.93997305 -9.481796163 5.677415252 0.999999997 0.971865601 0.02245459 0.057919152 21792913.46 18198061.54 0.056798174 0.014098696 3.30E-10 9.481796163 -0.028134396 SLVGS(ph)WLK ddPTM_HeLa_A486_30min_R1 2 SLVGSWLK 8 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 SLVGS(1)WLK;SLVGS(1)WLK ; 141.88 0.00040082 243160000 401050 409430 251490 185917 388940 438350 525150 483490 331300 506780 TRUE FALSE FALSE 372938.466 376985.2757 348873.6631 432824.1717 340155.5185 384270.8338 393751.9155 373409.8815 360017.3507 379878.9894 0.981729647 0.992382538 0.918381045 1.139373811 0.89543125 1.011561167 1.03651933 0.982970609 0.94771588 1 18.5351804 SLVHEVGKPPQDVTDDS(ph)PPSK ddPTM_HeLa_A485_30min_R1 5 SLVHEVGKPPQDVTDDSPPSK 21 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SLVHEVGKPPQDVT(0.001)DDS(0.998)PPS(0.001)K;SLVHEVGKPPQDVT(0.006)DDS(0.961)PPS(0.033)K;SLVHEVGKPPQDVT(0.286)DDS(0.695)PPS(0.019)K;SLVHEVGKPPQDVTDDS(1)PPSK;SLVHEVGKPPQDVTDDS(1)PPSK ;;;; 253.21 6.21E-59 1562830000 1083368 951473 673742 923472 1397690 1171135 1804000 1705090 1036123 1681990 TRUE FALSE FALSE 1324359.474 1062739.491 922987.2025 973918.937 1258531.076 1232453.818 1418560.663 1286914.004 1244063.382 1262700.848 1.048830748 0.84163996 0.730962685 0.771298236 0.996697736 0.976045767 1.123433682 1.019175687 0.985239999 1 20.26808145 -5.861712236 6.010050804 1.023594926 0.839951211 0.476889689 0.08645408 0.186121312 9.47407178 0.028574764 0.032625437 1.37E-06 5.861712236 -0.183643715 SLVHEVGKPPQDVTDDS(ph)PPSK ddPTM_HeLa_A486_30min_R1 3 SLVHEVGKPPQDVTDDSPPSK 21 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SLVHEVGKPPQDVTDDS(1)PPSK;SLVHEVGKPPQDVTDDS(1)PPSK;SLVHEVGKPPQDVTDDS(1)PPSK ;; 229.56 2.99E-36 1822940000 2141740 1983480 978830 190420 1869540 1999100 2534700 2462270 1639090 1753530 TRUE FALSE FALSE 1991615.086 1826301.821 1357859.19 443307.3833 1635044.86 1752471.367 1900491.251 1901664.872 1781167.641 1314434.674 1.515187574 1.389419997 1.033036648 0.337260871 1.243914888 1.333251018 1.445862079 1.44675495 1.355082664 1 20.32601101 -5.988864207 24.99067321 1.345146519 1.05177183 0.118779577 0.31296511 447.3037271 1003821.513 0.10494337 0.118893178 1.03E-06 5.988864207 -0.293374689 SLVLQRPQTWADCVTWACHHWHTQYSNNIR ddPTM_HeLa_A485_30min_R1 2 SLVLQRPQTWADCVTWACHHWHTQYSNNIR 30 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 257.07 6.03E-70 257000000 23003.4 30574 25107 17754.7 27486 30654 31446 38106 16461.8 23093 FALSE FALSE TRUE 28120.42697 34149.36334 34395.12409 18724.5943 24749.39733 32258.99604 24727.30521 28760.44375 19765.53226 17336.3401 1.622050953 1.96981388 1.983989925 1.080077698 1.427602204 1.860773143 1.42632788 1.658968594 1.140121396 1 14.08151174 -9.234232079 0.083521925 4.67E-12 2.444520146 0.391504924 0.268971951 59.27021146 1.377937829 26.7384206 13.62117085 5.83E-10 9.234232079 2.444520146 SLVLQRPQTWADCVTWACHHWHTQYSNNIR ddPTM_HeLa_A486_30min_R1 2 SLVLQRPQTWADCVTWACHHWHTQYSNNIR 30 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 214.4 6.61E-51 220010000 17978.1 18891.3 27961 7757.6 39244 26183 30594 29916 22240.9 24139 FALSE FALSE TRUE 16717.92803 17394.28459 38788.24802 18060.08485 34321.65158 22952.80767 22939.05761 23104.77986 24168.75912 18094.43728 0.923926385 0.961305639 2.143655943 0.998101492 1.896806795 1.268500772 1.267740867 1.276899607 1.335701063 1 14.14325862 -8.641738836 0.750023937 0.995841801 1.371446071 0.068731083 0.374813528 6.640301607 5.424381078 0.450061488 0.131876522 2.28E-09 8.641738836 0.37560427 SLVQANPEVAMDSIIHMTQHIS(ph)PTQR ddPTM_HeLa_A485_30min_R1 1 SLVQANPEVAMDSIIHMTQHISPTQR 26 0 Q13085;Q13085-4;Q13085-2;Q13085-3;A0A087WYS8;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 SLVQANPEVAMDS(0.037)IIHMT(0.185)QHIS(0.651)PT(0.127)QR 78.159 0.0054533 31107000 20418 31955 31275 11525 33724 25924 30878 33175 26976 22476 TRUE FALSE FALSE 24959.91366 35691.85928 42844.92396 12154.58157 30366.32015 27281.34055 24280.66305 25038.77923 32389.83576 16873.14684 1.479268443 2.115305439 2.539237308 0.720350607 1.799683274 1.61684959 1.439012134 1.483942472 1.91960848 1 14.04244144 -10.90162599 0.098484198 6.21E-11 2.234268449 0.160743188 0.455894671 152.7002856 2.191650873 49.26099853 10.7548474 1.25E-11 10.90162599 2.234268448 SLVQANPEVAMDSIIHMTQHIS(ph)PTQR ddPTM_HeLa_A486_30min_R1 1 SLVQANPEVAMDSIIHMTQHISPTQR 26 0 Q13085;Q13085-4;Q13085-2;Q13085-3;A0A087WYS8;Q59FY4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 SLVQANPEVAMDS(0.098)IIHMT(0.086)QHIS(0.733)PT(0.083)QR 72.842 0.0069024 29502000 18349 17334 16305 857.21 22779 13119 15710 17296 19577 11408 TRUE FALSE FALSE 17062.82985 15960.39071 22618.73266 1995.628201 19921.84541 11500.51116 11779.19184 13358.07837 21273.95012 8551.362546 1.995334634 1.866414928 2.645044289 0.233369617 2.329669138 1.344874703 1.37746374 1.562099408 2.487784842 1 13.0619386 SLVSVTK ddPTM_HeLa_A485_30min_R1 2 SLVSVTK 7 0 P08238;Q58FF7;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 161.6 0.0018712 212527000 488010 585200 487640 500430 718420 572310 761210 832380 503280 710520 FALSE FALSE TRUE 596566.1409 653634.0494 668038.3284 527767.2237 646891.5823 602275.2666 598571.265 628237.4999 604283.6796 533400.4402 1.118420789 1.225409655 1.25241428 0.989439048 1.21276912 1.129124053 1.122179923 1.177797116 1.132889353 1 19.02485949 -14 0.24099211 0.126838958 1.167640826 0.300123628 0.06985366 218.8369317 2.183765394 93.70408164 0.108895509 1.00E-14 14 1.040801868 SLVSVTK ddPTM_HeLa_A486_30min_R1 2 SLVSVTK 7 0 P08238;Q58FF7;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 147.34 0.0032767 92357000 220030 225890 152834 71045 250020 219210 252570 250230 193959 263350 FALSE FALSE TRUE 204607.0332 207989.6537 212015.4178 165396.3504 218660.1603 192166.099 189374.3146 193258.0915 210771.5223 197405.4459 1.036481199 1.053616595 1.074009974 0.837851001 1.107670355 0.973458955 0.959316567 0.978990679 1.067708752 1 17.59080226 SLYAS(ph)SPGGVYATR ddPTM_HeLa_A485_30min_R1 3 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SLYAS(0.49)S(0.49)PGGVYAT(0.02)R;SLYAS(0.499)S(0.499)PGGVYAT(0.002)R;SLYAS(0.5)S(0.5)PGGVYATR ;; 222.55 8.98E-28 8904100000 1743590 2044310 2030950 1890350 2636350 1999170 2526890 2790050 1839540 2482220 TRUE FALSE FALSE 2131445.58 2283374.271 2782282.92 1993615.034 2373865.737 2103843.45 1986999.309 2105785.863 2208718.805 1863448.236 1.143817971 1.225348914 1.49308302 1.06985265 1.273910212 1.129005577 1.066302391 1.130047952 1.185285838 1 20.82954331 -6.146068487 1.337072838 1.102501077 1.260035527 0.268978597 0.112162652 0.610592976 2.225951812 0.050792878 0.05052096 7.14E-07 6.146068487 0.15753445 SLYAS(ph)SPGGVYATR ddPTM_HeLa_A486_30min_R1 1 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SLYAS(0.497)S(0.497)PGGVYAT(0.006)R 57.804 0.035032 196910000 183300 194370 172670 88655 216400 188170 224660 222340 159100 217560 TRUE FALSE FALSE 170451.6166 178967.4133 239532.4483 206393.3204 189257.0942 164955.4986 168447.6918 171718.0356 172890.9161 163081.5599 1.045192459 1.097410482 1.468789288 1.265583432 1.160505788 1.011490807 1.03290459 1.052958015 1.060150002 1 17.31523414 -6.093430326 3.750259399 1.035478773 1.227486675 0.412769938 0.106301686 0.262932938 6.800215377 0.039280327 0.040087069 8.06E-07 6.093430326 0.192007902 SLYASS(ph)PGGVYATR ddPTM_HeLa_A485_30min_R1 7 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SLYAS(0.001)S(0.999)PGGVYATR;SLYAS(0.031)S(0.969)PGGVYATR;SLYAS(0.024)S(0.976)PGGVYATR;SLYAS(0.058)S(0.942)PGGVYATR;SLYAS(0.144)S(0.856)PGGVYATR;SLYAS(0.105)S(0.894)PGGVYATR;SLYAS(0.225)S(0.775)PGGVYATR ;;;;;; 338.04 1.59E-81 19092740000 4386650 5509150 5224420 4492440 6720570 5015190 6650050 7097600 4689930 5998870 TRUE FALSE FALSE 5362445.159 6153397.169 7157150.364 4737850.622 6051446.453 5277777.593 5229212.492 5356902.471 5631155.932 4503462.11 1.190738376 1.366370365 1.589255153 1.052046294 1.343732068 1.171937826 1.161153878 1.189507614 1.250405975 1 22.10260309 -5.276003246 24.98739204 1.182195104 1.380546228 0.3721237 0.126991943 862.2253396 1479327.758 0.034974871 0.052117404 5.30E-06 5.276003246 0.198351124 SLYASS(ph)PGGVYATR ddPTM_HeLa_A486_30min_R1 9 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SLYAS(0.194)S(0.806)PGGVYATR;SLYAS(0.324)S(0.676)PGGVYATR;SLYAS(0.024)S(0.976)PGGVYATR;SLYAS(0.039)S(0.961)PGGVYATR;SLYAS(0.432)S(0.565)PGGVYAT(0.003)R;SLYAS(0.029)S(0.971)PGGVYATR;SLY(0.001)AS(0.11)S(0.886)PGGVY(0.001)AT(0.002)R;SLYAS(0.002)S(0.998)PGGVYATR;SLYAS(0.207)S(0.793)PGGVYATR ;;;;;;;; 334.4 2.43E-81 1.23E+11 12348040 13321980 11268488 4927243 14952970 11970008 14352470 14516440 10765571 13193710 TRUE FALSE FALSE 11482506.16 12266297.79 15631948.33 11470870.71 13077429.07 10493270.12 10761330.2 11211363.5 11698739.36 9889919.139 1.161031349 1.24028292 1.58059415 1.159854853 1.322298887 1.061006664 1.08811104 1.133615285 1.18289535 1 23.23752729 -6.258540179 24.88154814 1.101163206 1.298495473 0.412303964 0.118912894 258.5961241 2219332.608 0.040587644 0.038891226 5.51E-07 6.258540179 0.197332267 SLYASSPGGVYATR ddPTM_HeLa_A485_30min_R1 2 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 329.85 6.75E-97 276600000 156734 217100 211210 155262 258510 212060 255140 277660 165388 224680 FALSE FALSE TRUE 191598.9376 242487.9565 289345.3682 163743.5699 232771.8367 223163.1337 200627.2547 209563.4496 198579.8546 168671.4109 1.135930129 1.437635193 1.715438121 0.970784373 1.380031361 1.323064368 1.189456195 1.242436098 1.177317801 1 17.36385594 -7.949527379 0.340527305 0.969184757 1.383716229 0.229790118 0.183261101 2.465431017 0.838156741 0.368629225 0.21623169 1.12E-08 7.949527379 0.414531472 SLYASSPGGVYATR ddPTM_HeLa_A486_30min_R1 2 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 210.95 4.84E-16 109290000 49339 51563 45554 15891.4 64274 51460 58456 57303 47551 54982 FALSE FALSE TRUE 45880.59089 47476.96009 63193.72878 36995.98231 56212.15559 45111.38841 43829.69052 44256.35782 51672.75897 41214.14933 1.11322426 1.151957783 1.533301786 0.897652455 1.363904302 1.094560707 1.063462215 1.073814662 1.253762599 1 15.3308521 SLYGDVDS(ph)PLPTGEAGGPPSTR ddPTM_HeLa_A485_30min_R1 2 SLYGDVDSPLPTGEAGGPPSTR 22 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;J3QL92 Q9Y4B5 MTCL1 Microtubule cross-linking factor 1 1 0 SLYGDVDS(0.997)PLPT(0.003)GEAGGPPSTR;SLYGDVDS(0.99)PLPT(0.01)GEAGGPPSTR ; 203.71 6.86E-27 200158000 161253 188261 187840 148482 214228 171395 206268 213538 155618 203903 TRUE FALSE FALSE 197123.1735 210276.4863 257329.8327 156593.1957 192898.7081 180368.9772 162197.1567 161167.4707 186849.1052 153073.7347 1.287766147 1.373694101 1.681084173 1.022991933 1.260168562 1.178314344 1.059601486 1.052874754 1.22064772 1 17.22386723 -5.278106474 24.97831249 1.122281475 1.440132759 0.607235252 0.122911767 539.1445056 807993.388 0.034633504 0.05153189 5.27E-06 5.278106474 0.317851284 SLYVPVMITWNPHWYR ddPTM_HeLa_A485_30min_R1 3 SLYVPVMITWNPHWYR 16 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7 A0A087WXK2 PEG10 Retrotransposon-derived protein PEG10 0 0 ;; ;; 173.36 2.27E-11 58059000 27683.2 32460.7 35348.7 25528.2 43127.2 32376.5 42566.2 48139.1 25285.8 37691.9 FALSE FALSE TRUE 33841.23233 36256.69649 48425.65511 26922.74093 38833.30454 34071.68348 33471.58364 36332.91025 30360.42812 28296.003 1.195972178 1.281336325 1.711395603 0.951467984 1.372395407 1.204116478 1.182908541 1.284029771 1.072958189 1 14.78831066 -7.771696059 0.349825991 0.974539525 1.344913482 0.217301838 0.180568576 2.221860359 0.84357316 0.306190062 0.206205355 1.69E-08 7.771696059 0.370373957 SLYVPVMITWNPHWYR ddPTM_HeLa_A486_30min_R1 1 SLYVPVMITWNPHWYR 16 0 A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7 A0A087WXK2 PEG10 Retrotransposon-derived protein PEG10 0 0 92.939 0.0017156 11556000 5274.9 8299.1 8746.1 4365.8 11272 8967.2 10418 9756.6 7453.3 7630.8 FALSE FALSE TRUE 4905.15675 7641.449091 12132.82415 10163.80304 9858.160653 7860.918036 7811.30621 7535.235165 8099.358045 5719.998012 0.857545184 1.335918138 2.12112384 1.77688926 1.723455259 1.374286848 1.365613448 1.317349263 1.415972178 1 12.48179893 -6.429826696 5.005237871 1.309141098 1.592539248 0.145480255 0.32363045 0.49689768 20.19260928 0.12602207 0.109432987 3.72E-07 6.429826696 0.28339815 SMAHS(ph)PGPVSQASPGTSSAVLFLSK ddPTM_HeLa_A485_30min_R1 2 SMAHSPGPVSQASPGTSSAVLFLSK 25 0 Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4;H0Y6Z4 Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 1 0 SMAHS(0.996)PGPVS(0.004)QASPGTSSAVLFLSK;S(0.005)MAHS(0.981)PGPVS(0.014)QASPGTSSAVLFLSK ; 217.17 4.10E-38 716070000 291521 447710 350491 175684 442710 415260 461090 500830 324064 362010 TRUE FALSE FALSE 356368.8407 500065.7899 480152.206 185281.1721 398632.238 437002.3715 362574.3547 378000.6572 389100.6723 271767.5693 1.3113001 1.840049537 1.766775216 0.681763363 1.466813126 1.608000442 1.334134002 1.390896854 1.431740635 1 18.05201378 -12.80652869 0.170875972 2.77E-20 1.535791988 0.154055102 0.299762594 173.7762981 2.379494076 62.68099303 1.179452822 1.56E-13 12.80652869 1.535791988 SMAHS(ph)PGPVSQASPGTSSAVLFLSK ddPTM_HeLa_A486_30min_R1 1 SMAHSPGPVSQASPGTSSAVLFLSK 25 0 Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4;H0Y6Z4 Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 1 0 SMAHS(0.995)PGPVS(0.005)QASPGTSSAVLFLSK 183.31 2.06E-20 245400000 257170 227530 193670 17789 268990 211080 228370 200360 233680 153630 TRUE FALSE FALSE 239143.711 209499.6941 268664.2107 41413.69101 235250.766 185039.0957 171229.4105 154742.4018 253935.5706 115160.048 2.076620452 1.819204644 2.33296369 0.359618563 2.042815803 1.606799397 1.48688207 1.343716024 2.205066556 1 16.81328077 -1.000001256 0.041796197 2.82E-08 4.342315913 0.115795771 0.543780922 1746.349053 5.562378932 154.1731032 526.9537908 0.099999711 1.000001256 4.342315884 SMAHSPGPVS(ph)QASPGTSSAVLFLSK ddPTM_HeLa_A486_30min_R1 1 SMAHSPGPVSQASPGTSSAVLFLSK 25 0 Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4;H0Y6Z4 Q8TDZ2-2 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 1 0 S(0.046)MAHS(0.232)PGPVS(0.713)QAS(0.007)PGT(0.001)SSAVLFLSK 68.284 0.0080188 213700000 90308 95645 82447 11776 110850 82470 94322 96225 97868 65938 TRUE FALSE FALSE 83977.87555 88065.74187 114372.6864 27415.12313 96946.15936 72295.68989 70721.63796 74316.66808 106351.277 49426.69562 1.699038839 1.781744476 2.313986096 0.554662269 1.96141292 1.462685073 1.430838883 1.503573467 2.151697088 1 15.59300284 SMDAMSS(ph)PTKTETVK ddPTM_HeLa_A485_30min_R1 1 SMDAMSSPTKTETVK 15 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 SMDAMS(0.122)S(0.878)PTKTETVK 158.15 4.79E-09 988730000 680140 541840 325940 1057300 788730 717610 1194200 1321600 533630 1366000 TRUE FALSE FALSE 831434.7965 605203.4746 446518.7695 1115057.622 710201.2718 755182.95 939049.4143 997475.5278 640724.6463 1025481.339 0.81077516 0.590165273 0.435423593 1.087350475 0.692554067 0.736418032 0.91571575 0.972690082 0.624803808 1 19.96786981 -5.252171286 24.98703836 0.850248944 0.609925753 0.334535043 0.160546858 796.5613411 2147547.105 0.043014191 0.073195541 5.60E-06 5.252171286 -0.24032319 SMDAMSS(ph)PTKTETVK ddPTM_HeLa_A486_30min_R1 3 SMDAMSSPTKTETVK 15 1 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;Q9UPN3-5 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 SMDAMS(0.013)S(0.987)PTKTETVK;SMDAMS(0.193)S(0.806)PT(0.001)KTETVK;SMDAMS(0.018)S(0.981)PT(0.001)KTETVK ;; 204.05 1.01E-25 2114860000 3721340 2930160 1375180 2163960 3239960 4264200 5868100 5354000 2668620 6332400 TRUE FALSE FALSE 3460493.283 2697963.45 1907686.525 5037808.24 2833574.005 3738126.359 4399839.314 4135011.077 2899938.13 4746725.823 0.729027421 0.568384093 0.401895242 1.061322779 0.596953376 0.787516806 0.926920888 0.871129117 0.610934408 1 22.17850129 -5.251132158 24.98645918 0.822785517 0.566630451 0.375733607 0.158784386 778.3941785 1886956.12 0.042176968 0.072033703 5.61E-06 5.251132158 -0.256155067 SMESS(ph)PR ddPTM_HeLa_A485_30min_R1 6 SMESSPR 7 0 Q1ED39;H3BPL4 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 SMES(0.02)S(0.98)PR;SMES(0.002)S(0.998)PR;SMES(0.041)S(0.959)PR;SMES(0.122)S(0.878)PR;SMES(0.001)S(0.999)PR;SMES(0.001)S(0.999)PR ;;;;; 133.58 0.001626 11015580000 7014530 9704300 8229510 7293650 9172200 9006500 10856000 12776600 8488160 10214400 TRUE FALSE FALSE 8574887.999 10839133.47 11273948.21 7692083.631 8258983.562 9478066.413 8536526.915 9643118.817 10191655.85 7668138.062 1.118249036 1.413528732 1.470232815 1.003122736 1.077052016 1.236032311 1.113246377 1.257556755 1.329091335 1 22.87044488 -5.256921205 24.99770153 1.155508003 1.341956041 0.298255671 0.131907966 503.9464212 2788176.664 0.036950577 0.061247428 5.53E-06 5.256921205 0.186448038 SMESS(ph)PR ddPTM_HeLa_A486_30min_R1 6 SMESSPR 7 0 Q1ED39;H3BPL4 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 SMES(0.001)S(0.999)PR;SMES(0.001)S(0.999)PR;SMES(0.11)S(0.889)PR;SMES(0.113)S(0.886)PR;SMES(0.003)S(0.997)PR;SMES(0.001)S(0.999)PR ;;;;; 143.73 0.0013494 7696990000 7146250 6514970 6882190 2398360 7764520 7702850 7631850 6812550 7642140 8400360 TRUE FALSE FALSE 6645334.778 5998700.05 9547158.279 5583503.286 6790621.5 6752550.684 5722280.409 5261481.082 8304566.848 6296855.179 1.055341848 0.952650153 1.516178792 0.886712991 1.07841475 1.072368745 0.908752107 0.835572827 1.318843552 1 22.58620006 SMFGS(ph)LDPPNMPQALPK ddPTM_HeLa_A486_30min_R1 1 SMFGSLDPPNMPQALPK 17 0 Q99570 Q99570 PIK3R4 Phosphoinositide 3-kinase regulatory subunit 4 1 0 S(0.019)MFGS(0.981)LDPPNMPQALPK 119.56 5.84E-05 79318000 403690 375450 274630 167450 464580 464650 520290 521620 378950 518670 TRUE FALSE FALSE 375393.4157 345697.9746 380974.0908 389832.0625 406308.0444 407326.2072 390107.9389 402858.5129 411797.6911 388791.656 0.965538766 0.889159963 0.979892662 1.002676 1.045053406 1.047672194 1.003385574 1.036180964 1.059173171 1 18.56863773 -5.159202356 2.171089801 1.031960957 0.92793127 0.699232907 0.026259317 0.157587648 1.445207497 0.007424671 0.015811871 6.93E-06 5.159202356 -0.104029687 SMGS(ph)QEDDSGNKPSSYS ddPTM_HeLa_A486_30min_R1 2 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGS(1)QEDDSGNKPSSYS;SMGS(1)QEDDSGNKPSSYS ; 180.14 2.10E-12 292460000 462620 411040 235350 166408 422990 466390 544090 518770 340450 619150 TRUE FALSE FALSE 430192.727 378467.6934 326483.8229 387406.2338 369934.65 408851.5437 407952.9272 400657.3957 369960.4801 464110.81 0.926918136 0.815468387 0.703460932 0.834727883 0.797082598 0.880935188 0.878998977 0.863279603 0.797138253 1 18.82410978 -6.265636307 24.23560782 0.875208419 0.810368388 0.190508552 0.06904079 445.7298792 2573904.495 0.023834384 0.021792569 5.42E-07 6.265636307 -0.064840031 SMGSQEDDSGNKPS(ph)SYS ddPTM_HeLa_A485_30min_R1 1 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.333)S(0.333)YS(0.333) 143.39 1.12E-06 352620000 198130 192730 139080 241090 260660 199700 304070 334490 176350 321090 TRUE FALSE FALSE 242203.335 215268.097 190531.4796 254260.1362 234707.7752 210155.9832 239102.9605 252455.803 211741.8274 241048.1722 1.004792248 0.893050111 0.790429058 1.054810472 0.973696556 0.87184226 0.991930195 1.047325108 0.878421211 1 17.87896196 -5.272200522 24.98217732 0.972452974 0.89578643 0.186632258 0.074486758 1211.881257 2813400.806 0.021166526 0.031766333 5.34E-06 5.272200522 -0.076666545 SMGSQEDDSGNKPS(ph)SYS ddPTM_HeLa_A486_30min_R1 2 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.333)S(0.333)YS(0.333);SMGSQEDDSGNKPS(0.333)S(0.333)YS(0.333) ; 107.65 0.00014535 242109000 428445 434208 237249 186539 417078 469520 557190 526420 316428 545180 TRUE FALSE FALSE 398413.218 399799.7767 329118.1665 434272.2192 364764.1881 411595.3961 417775.1686 406565.6577 343856.2338 408663.3795 0.974917837 0.978310749 0.805352726 1.062664875 0.892578602 1.00717465 1.022296564 0.994866871 0.841416802 1 18.64055344 -5.288201304 24.99854887 0.974162974 0.925405363 0.099606047 0.075017379 1919.021107 1792569.773 0.02079363 0.030851947 5.15E-06 5.288201304 -0.04875761 SMGSQEDDSGNKPSS(ph)YS ddPTM_HeLa_A485_30min_R1 1 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.193)S(0.734)YS(0.074) 218.83 5.98E-33 287030000 388220 374050 289560 460340 507620 405920 599980 643770 380690 632080 TRUE FALSE FALSE 474578.1997 417791.8937 396680.2936 485487.2086 457079.5704 427173.3435 471789.3716 485884.3981 457090.9911 474514.0886 1.000135109 0.88046257 0.835971583 1.023124961 0.963258165 0.900233215 0.99425788 1.023962006 0.963282234 1 18.8560914 -6.416068415 0.687203603 1.000764047 0.918198759 0.180915645 0.055598478 1.224174843 1.234441548 0.045717235 0.040390657 3.84E-07 6.416068415 -0.082565289 SMGSQEDDSGNKPSS(ph)YS ddPTM_HeLa_A486_30min_R1 2 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.072)S(0.464)YS(0.464);SMGSQEDDSGNKPS(0.087)S(0.456)YS(0.456) ; 312.39 6.05E-78 1727270000 2192420 2142300 1293150 935080 2020630 2280860 2708700 2678600 1610100 2686300 TRUE FALSE FALSE 2038742.68 1972536.346 1793892.312 2176913.496 1767183.744 1999470.683 2030954.61 2068741.253 1749664.764 2013632.995 1.012469842 0.979590795 0.890873519 1.081087518 0.877609648 0.992966786 1.008602171 1.027367578 0.868909463 1 20.94136933 SMGSQEDDSGNKPSSYS(ph) ddPTM_HeLa_A485_30min_R1 1 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.005)S(0.007)YS(0.988) 273.82 3.21E-58 1032600000 465090 450000 346500 594860 550780 485210 687950 755230 421290 736650 TRUE FALSE FALSE 568547.666 502623.5855 474684.7691 627355.6955 495942.4093 510614.8453 540963.8625 570008.6583 505839.0387 553016.712 1.028084059 0.908875943 0.858355197 1.134424479 0.896794615 0.923326247 0.978205271 1.030725918 0.91469033 1 19.07696355 -14 0.170636682 1.14350851 0.95466875 0.014040998 0.078053533 764.9445134 7.220995982 37.13455021 0.278798401 1.00E-14 14 -0.18883976 SMGSQEDDSGNKPSSYS(ph) ddPTM_HeLa_A486_30min_R1 2 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.057)S(0.009)YS(0.934);SMGSQEDDSGNKPS(0.001)S(0.089)YS(0.909) ; 188.58 5.89E-18 584380000 1175420 1191050 706700 523880 1176720 1311320 1624870 1539940 996660 1541630 TRUE FALSE FALSE 1093029.128 1096666.86 980353.1661 1219619.115 1029124.805 1149542.671 1218310.34 1189329.279 1083051.291 1155595.814 0.945857639 0.949005567 0.848352992 1.05540285 0.890557748 0.994761886 1.054270295 1.029191405 0.937223273 1 20.14020545 -6.470027999 10.56546276 1.01001264 0.940234171 0.248945728 0.056575174 1.048104266 207.1872658 0.019457142 0.017115857 3.39E-07 6.470027999 -0.069778469 SMGTGDT(ph)PGLEVPS(ph)SPLRK ddPTM_HeLa_A486_30min_R1 1 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 SMGT(0.001)GDT(0.999)PGLEVPS(0.547)S(0.453)PLRK 99.93 0.0001894 97296000 131930 141720 107380 68451 149860 146050 170990 161700 104260 165260 TRUE FALSE FALSE 122682.3883 130489.5911 148960.4117 159357.3873 131063.1614 128031.8359 128206.4935 124884.4399 113297.3407 123877.8203 0.990349911 1.053373321 1.202478469 1.286407743 1.058003451 1.033533167 1.034943084 1.008125906 0.914589395 1 16.91855838 -5.992649151 24.99621878 1.006009999 1.137380715 0.380976941 0.080693894 215.1469483 731590.4457 0.027606339 0.031240907 1.02E-06 5.992649151 0.131370716 SMGTGDTPGLEVPS(ph)SPLR ddPTM_HeLa_A485_30min_R1 3 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR ;; 140.93 4.38E-07 1005180000 1316980 1805280 1753530 1413430 2182300 1683930 1984140 2192830 1604960 1914510 TRUE FALSE FALSE 1609937.657 2016391.792 2402233.717 1490642.102 1965022.549 1772097.971 1560212.28 1655035.004 1927060.75 1437257.891 1.12014529 1.402943623 1.671400611 1.037143098 1.367202478 1.232971467 1.085547896 1.151522642 1.340789821 1 20.45488752 -5.960338173 1.13475183 1.161820804 1.363818475 0.163302171 0.179207908 0.891666864 2.433759122 0.083039866 0.100030395 1.10E-06 5.960338173 0.201997671 SMGTGDTPGLEVPS(ph)SPLR ddPTM_HeLa_A486_30min_R1 3 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR ;; 124.25 0.00012678 619840000 758887 807840 698656 275412 887540 720859 831150 823818 717134 874330 TRUE FALSE FALSE 705692.9402 743823.8163 969194.3139 641173.0546 776216.4572 631926.7457 623187.479 636252.6252 779295.7525 655392.0771 1.076749269 1.134929521 1.478800779 0.978304555 1.18435435 0.964196498 0.950862088 0.970796944 1.189052751 1 19.32199871 SMGTGDTPGLEVPS(ph)SPLRK ddPTM_HeLa_A485_30min_R1 6 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.57)S(0.43)PLRK;SMGTGDTPGLEVPS(0.655)S(0.345)PLRK;SMGTGDT(0.035)PGLEVPS(0.631)S(0.334)PLRK;SMGTGDTPGLEVPS(0.857)S(0.143)PLRK;SMGTGDT(0.068)PGLEVPS(0.738)S(0.194)PLRK;SMGTGDTPGLEVPS(0.589)S(0.411)PLRK ;;;;; 282.91 5.46E-70 10249990000 2079280 2223770 1746540 2270960 2688080 2345050 3453850 3595490 2095350 3069940 TRUE FALSE FALSE 2541808.663 2483820.557 2392657.826 2395016.794 2420445.317 2467833.192 2715906.732 2713690.44 2515867.525 2304660.456 1.102899412 1.077738176 1.038182358 1.039205922 1.050239444 1.070801204 1.178441156 1.177479499 1.091643465 1 21.13612278 -6.595627765 9.853696639 1.126605251 1.060047244 0.159804281 0.05068036 0.486158499 62.03338755 0.018925511 0.014648108 2.54E-07 6.595627765 -0.066558007 SMGTGDTPGLEVPS(ph)SPLRK ddPTM_HeLa_A486_30min_R1 7 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.5)S(0.5)PLRK;SMGTGDTPGLEVPS(0.735)S(0.265)PLRK;SMGTGDTPGLEVPS(0.625)S(0.375)PLRK;SMGTGDT(0.008)PGLEVPS(0.627)S(0.365)PLRK;SMGTGDTPGLEVPS(0.869)S(0.131)PLRK;SMGTGDTPGLEVPS(0.5)S(0.5)PLRK;S(0.001)MGT(0.001)GDT(0.33)PGLEVPS(0.334)S(0.334)PLRK ;;;;;; 244.22 5.28E-46 11319240000 1516769 1437045 932662 547348 1562019 1462606 1801515 1757535 1150344 1793747 TRUE FALSE FALSE 1410451.326 1323168.321 1293813.704 1274253.805 1366096.012 1282164.542 1350756.893 1357382.647 1250056.744 1344581.076 1.048989422 0.984074776 0.962242982 0.947695776 1.016001219 0.953579197 1.004593116 1.009520862 0.92969979 1 20.35872532 -4.266755767 4.669518769 0.978308874 1.052957409 0.367421654 0.027800244 0.189675014 11.34043289 0.006719648 0.046055943 5.41E-05 4.266755767 0.074648534 SMGTGDTPGLEVPSS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.169)S(0.831)PLR 87.275 0.0085519 246890000 80299 103330 106150 100870 134240 107130 137890 131550 98855 136440 TRUE FALSE FALSE 98161.23552 115413.5446 145419.3023 106380.2727 120874.5943 112739.1611 108428.675 99287.15624 118694.2917 102428.019 0.958343591 1.126777085 1.419721905 1.03858567 1.180093059 1.100667203 1.058584127 0.969335903 1.158806867 1 16.64425089 -6.585152744 2.663036439 1.043070217 1.153230422 0.126204698 0.120228826 0.575440262 8.282866559 0.051912171 0.039173972 2.60E-07 6.585152744 0.110160204 SMGTGDTPGLEVPSS(ph)PLR ddPTM_HeLa_A486_30min_R1 4 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.196)S(0.804)PLR;SMGTGDTPGLEVPS(0.024)S(0.976)PLR;SMGTGDTPGLEVPS(0.15)S(0.85)PLR;SMGTGDTPGLEVPS(0.002)S(0.998)PLR ;;; 306.75 1.20E-79 1559340000 2155190 2379180 1951280 664417 2508650 2048990 2231070 2342130 1776130 2182420 TRUE FALSE FALSE 2004122.31 2190645.112 2706867.873 1546796.354 2193991.725 1796206.446 1672832.688 1808878.127 1930086.378 1635927.827 1.225067682 1.339084204 1.65463771 0.945516256 1.341129901 1.097974139 1.022558979 1.105720007 1.179811448 1 20.64167767 -5.272672016 24.99122497 1.110229805 1.399545313 0.491072282 0.142991095 620.4770833 1380483.25 0.039900427 0.059798993 5.34E-06 5.272672016 0.289315507 SMGTGDTPGLEVPSS(ph)PLRK ddPTM_HeLa_A485_30min_R1 3 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.236)S(0.764)PLRK;SMGTGDTPGLEVPS(0.001)S(0.999)PLRK;SMGTGDTPGLEVPS(0.027)S(0.973)PLRK ;; 300.27 1.92E-79 10771690000 2507120 2635850 2149660 2912370 3443850 2958420 4161170 4305520 2510990 3554560 TRUE FALSE FALSE 3064820.195 2944089.729 2944908.689 3071465.399 3100968.202 3113318.297 3272102.036 3249584.469 3014922.661 2668473.609 1.148529326 1.103286058 1.10359296 1.15101959 1.162075649 1.166703799 1.226207381 1.217769012 1.129830421 1 21.34758331 -5.444659455 3.864676057 1.16548676 1.117205096 0.020562547 0.060396365 0.52570314 14.79401036 0.016989898 0.025413915 3.59E-06 5.444659455 -0.048281663 SMGTGDTPGLEVPSS(ph)PLRK ddPTM_HeLa_A486_30min_R1 1 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.078)S(0.922)PLRK 217.18 8.08E-35 8820100000 1513400 1476700 982480 563610 1445600 1291800 1626000 1594500 996270 1465100 TRUE FALSE FALSE 1407318.475 1359680.914 1362922.568 1312112.563 1264279.368 1132430.85 1219157.602 1231467.158 1082627.486 1098229.424 1.281443062 1.238066368 1.241018077 1.194752695 1.151197865 1.031142333 1.110111945 1.121320492 0.985793553 1 20.06674804 -5.569166686 0.382288318 1.003380499 1.351770737 0.849442867 0.038649876 0.903814855 0.210299983 0.040633056 0.132624021 2.70E-06 5.569166686 0.348390238 SMGTLENT(ph)FEGHK ddPTM_HeLa_A486_30min_R1 1 SMGTLENTFEGHK 13 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 SMGTLENT(1)FEGHK 80.609 0.00631 147730000 83845 73615 53789 36847 83926 80211 113890 108200 61159 104780 TRUE FALSE FALSE 77967.89848 67781.4793 74617.54132 85781.67814 73399.2185 70315.38235 85393.51739 83565.22199 66460.31136 78542.406 0.992685384 0.862992143 0.950028719 1.092170237 0.934517062 0.895253735 1.087228183 1.063950371 0.846171065 1 16.26118417 -5.007167106 24.95836636 0.991577703 0.922506673 0.084459271 0.081682896 733.7092213 2555065.06 0.021622191 0.042322431 9.84E-06 5.007167106 -0.06907103 SMIGSTAQQFLTFLSHR ddPTM_HeLa_A485_30min_R1 4 SMIGSTAQQFLTFLSHR 17 0 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 0 0 ;;; ;;; 236.78 2.61E-33 67654000 34832.4 49936.9 48734.8 38869.8 56570.1 38080.2 53049.7 49975.9 34132.7 58018.3 FALSE FALSE TRUE 42580.74721 55776.58606 66763.83054 40993.15875 50937.78221 40074.02039 41715.19822 37719.23217 40982.81981 43555.40556 0.977622563 1.280589294 1.532848327 0.941172702 1.169493925 0.920069963 0.957750196 0.866005762 0.940935328 1 15.41056416 -5.857119848 1.428842285 0.930248929 1.243415982 0.380496914 0.1555499 0.40546096 1.7241595 0.061511289 0.078166431 1.39E-06 5.857119848 0.313167053 SMIGSTAQQFLTFLSHR ddPTM_HeLa_A486_30min_R1 4 SMIGSTAQQFLTFLSHR 17 0 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 0 0 ;;; ;;; 258.14 2.80E-43 60540000 56212 62114 52366 19950.3 70909 53503 67307 67538 54325 63541 FALSE FALSE TRUE 52271.82908 57191.86042 72643.51761 46445.30663 62014.93202 46902.34384 50466.0767 52161.07174 59033.93474 47629.92002 1.097457839 1.200754912 1.525165643 0.975128798 1.302016296 0.984724388 1.059545695 1.095132466 1.239429643 1 15.53958051 -5.299302818 24.99280653 1.100389634 1.267089574 0.253524267 0.14163569 795.7322431 525243.2544 0.03932468 0.058329143 5.02E-06 5.299302818 0.166699939 SMMS(ph)PMADR ddPTM_HeLa_A485_30min_R1 2 SMMSPMADR 9 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 SMMS(1)PMADR;SMMS(1)PMADR ; 176.78 1.31E-06 623510000 239430 326570 305280 239540 361050 294210 308570 346760 268460 293690 TRUE FALSE FALSE 292690.3775 364759.5207 418215.7758 252625.4637 325102.5943 309614.3807 242641.4987 261716.5663 322337.4595 220478.488 1.327523516 1.654399593 1.896855243 1.145805498 1.474532038 1.404283853 1.100522327 1.187039011 1.461990521 1 17.75027837 -5.882228098 0.988413242 1.214689465 1.595934349 0.32355733 0.21350171 0.661372086 1.396964196 0.105497464 0.143320696 1.31E-06 5.882228098 0.381244884 SMMS(ph)PMADR ddPTM_HeLa_A486_30min_R1 3 SMMSPMADR 9 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 SMMS(1)PMADR;SMMS(1)PMADR;S(0.001)MMS(0.999)PMADR ;; 152.64 5.70E-05 456140000 321170 312634 282991 110487 384862 265176 313855 343974 274142 304294 TRUE FALSE FALSE 298657.6415 287859.7432 392572.694 257219.3197 336589.0193 232461.2812 235325.1594 265658.6291 297904.8493 228096.8018 1.309346029 1.262006924 1.721079344 1.127676134 1.475641117 1.01913433 1.031689868 1.164674941 1.306045709 1 17.79928669 -6.26235448 24.99616199 1.110062457 1.377667282 0.406037741 0.166128662 89.53354344 2445605.085 0.056235126 0.052467051 5.47E-07 6.26235448 0.267604826 SMMS(ph)PMAER ddPTM_HeLa_A485_30min_R1 4 SMMSPMAER 9 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 SMMS(1)PMAER;S(0.001)MMS(0.999)PMAER;SMMS(1)PMAER;SMMS(1)PMAER ;;; 165.3 1.01E-05 1773730000 460153 615227 605220 459433 748320 589690 617600 706560 496012 582830 TRUE FALSE FALSE 562512.4473 687172.4459 829116.0633 484530.6614 673814.6333 620565.2566 485644.7147 533275.0522 595557.0587 437541.2072 1.285621647 1.570531951 1.89494395 1.107394352 1.540002684 1.418301285 1.109940519 1.218799609 1.361145074 1 18.73905937 -6.969357348 0.396140123 1.034651691 1.57076162 0.322790211 0.209293675 1.413929929 0.562229317 0.24567476 0.254227905 1.07E-07 6.969357348 0.536109929 SMMS(ph)PMAER ddPTM_HeLa_A486_30min_R1 4 SMMSPMAER 9 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 SMMS(1)PMAER;SMMS(1)PMAER;SMMS(1)PMAER;SMMS(1)PMAER ;;; 160.88 1.35E-05 1596120000 395402 419251 372602 132506 480199 374061 394773 428310 337967 369349 TRUE FALSE FALSE 367686.3617 386028.0239 516883.473 308480.6645 419967.9637 327913.157 295996.6199 330793.1629 367262.2517 276861.6063 1.328051103 1.394299589 1.86693807 1.114205283 1.516887695 1.184393753 1.069114002 1.194796084 1.326519255 1 18.07880548 -6.159317932 1.48177765 1.154339055 1.471665505 0.335791534 0.196461581 0.484499926 2.140366177 0.084445771 0.08292107 6.93E-07 6.159317932 0.31732645 SMS(ph)AAFCSLLAPER ddPTM_HeLa_A485_30min_R1 4 SMSAAFCSLLAPER 14 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 SMS(1)AAFCSLLAPER;SMS(1)AAFCSLLAPER;S(0.001)MS(0.999)AAFCSLLAPER;SMS(1)AAFCSLLAPER ;;; 241.41 2.48E-35 1077970000 298624 261681 239113 296611 329721 320059 511467 553895 239018 372793 TRUE FALSE FALSE 365051.8786 292282.3166 327570.849 312814.1079 296892.8195 336816.7943 402187.8971 418051.3828 286986.7202 279862.5658 1.304396954 1.044378035 1.170470399 1.117741871 1.060852203 1.203507848 1.437090723 1.493773851 1.025455903 1 18.094359 -6.52597908 24.96537025 1.285952425 1.134523427 0.049216961 0.161134794 173.925859 1400501.315 0.059394544 0.046264048 2.98E-07 6.52597908 -0.151428998 SMS(ph)AAFCSLLAPER ddPTM_HeLa_A486_30min_R1 4 SMSAAFCSLLAPER 14 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 SMS(1)AAFCSLLAPER;SMS(1)AAFCSLLAPER;S(0.003)MS(0.997)AAFCSLLAPER;SMS(1)AAFCSLLAPER ;;; 249.3 7.09E-36 1070380000 557560 568470 476784 267916 642920 636343 845142 767350 441078 863416 TRUE FALSE FALSE 518477.9232 523422.3669 661407.5335 623721.9877 562278.9786 557837.4705 633678.5326 592641.1561 479310.9962 647211.0137 0.801095643 0.808735259 1.021934917 0.963707314 0.868772265 0.861909731 0.979091083 0.915684597 0.740579171 1 19.30387663 -4.606189007 15.26740323 0.915861035 0.803006017 0.255544666 0.077764947 1.635028776 295.550184 0.019906636 0.052672231 2.48E-05 4.606189007 -0.112855018 SMS(ph)APSDLEMIGNEDLEFTR ddPTM_HeLa_A485_30min_R1 1 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 0 S(0.111)MS(0.887)APS(0.002)DLEMIGNEDLEFTR 140.16 5.53E-08 48853000 10473 16407 15779 13023 16295 15430 15898 18785 11482 16728 TRUE FALSE FALSE 12802.68272 18325.65593 21616.30872 13734.41351 14672.61258 16237.89094 12501.26243 14177.9493 13786.33208 12558.01746 1.019482794 1.45927938 1.72131539 1.093676893 1.168386064 1.293029811 0.995480574 1.128995826 1.097811189 1 13.6163211 -5.368091881 20.51402046 1.121571953 1.406508666 0.356161095 0.177581997 8.053489333 1538.809732 0.050528067 0.074945207 4.28E-06 5.368091881 0.284936713 SMS(ph)APVIFDR ddPTM_HeLa_A485_30min_R1 1 SMSAPVIFDR 10 0 O60749;D6RC15 O60749 SNX2 Sorting nexin-2 1 0 S(0.157)MS(0.843)APVIFDR 165.35 4.41E-07 84722000 60360 89024 89413 67047 104500 84290 96865 100880 76287 92317 TRUE FALSE FALSE 73786.87376 99434.58239 122490.5895 70709.60784 94095.61308 88703.29406 76169.00144 76139.02183 91597.10115 69304.07087 1.064683111 1.434758177 1.76743715 1.020280727 1.357721298 1.279914628 1.099055228 1.098622648 1.321669853 1 16.08065248 -6.221294818 0.988877743 1.135608282 1.377312397 0.16012043 0.207877084 0.99601828 2.070391668 0.119648918 0.113415874 6.01E-07 6.221294818 0.241704115 SMS(ph)APVIFDR ddPTM_HeLa_A486_30min_R1 1 SMSAPVIFDR 10 0 O60749;D6RC15 O60749 SNX2 Sorting nexin-2 1 0 S(0.486)MS(0.514)APVIFDR 169.89 2.89E-07 76029000 94992 101060 82899 37697 110880 97393 111610 104280 87257 111210 TRUE FALSE FALSE 88333.55134 93051.63755 114999.7129 87760.5211 96972.39649 85377.64188 83683.99751 80537.72042 94820.50702 83362.29214 1.059634387 1.116231754 1.379517165 1.052760413 1.163264517 1.024175796 1.003859123 0.966116914 1.137450814 1 16.34710733 -6.26300553 22.80935187 1.022798977 1.159040793 0.314418737 0.094273933 50.86071808 740723.8557 0.032612268 0.03032105 5.46E-07 6.26300553 0.136241815 SMS(ph)DVSAEDVQNLR ddPTM_HeLa_A485_30min_R1 5 SMSDVSAEDVQNLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.19)MS(0.81)DVSAEDVQNLR;S(0.033)MS(0.967)DVSAEDVQNLR;SMS(1)DVSAEDVQNLR;SMS(0.999)DVS(0.001)AEDVQNLR;SMS(1)DVSAEDVQNLR ;;;; 212.24 1.82E-22 2635907000 1028848 1348605 1274525 1246472 1782400 1253510 1783060 1826840 1272186 1623876 TRUE FALSE FALSE 1257711.688 1506312.623 1746024.835 1314563.609 1604937.998 1319141.845 1402094.665 1378804.626 1527502.061 1219073.598 1.031694633 1.235620741 1.432255474 1.07832998 1.316522644 1.082085484 1.150131269 1.131026566 1.253002331 1 20.2173538 -6.278785342 24.82264223 1.133118429 1.223859822 0.132859164 0.120520003 1696.536024 2427791.767 0.041721251 0.036885152 5.26E-07 6.278785342 0.090741393 SMS(ph)DVSAEDVQNLR ddPTM_HeLa_A486_30min_R1 4 SMSDVSAEDVQNLR 14 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;E9PK58;E9PLU6;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.012)MS(0.988)DVSAEDVQNLR;S(0.001)MS(0.999)DVSAEDVQNLR;SMS(0.999)DVSAEDVQNLR;S(0.204)MS(0.782)DVS(0.014)AEDVQNLR ;;; 233.62 1.40E-31 689463000 494925 580883 492493 187852 666105 550260 602798 593349 406209 504544 TRUE FALSE FALSE 460233.3133 534851.7155 683199.479 437328.9495 582555.8997 482374.5158 451971.5647 458256.3854 441419.5232 378202.8984 1.216895257 1.414192535 1.806436392 1.156334209 1.540326376 1.275438443 1.195050505 1.211668095 1.167150027 1 18.52880089 -7.114116631 0.641002457 1.033648742 1.450568028 0.387332401 0.171820181 0.77852481 0.635876063 0.160072743 0.090908474 7.69E-08 7.114116631 0.416919286 SMS(ph)ENAVR ddPTM_HeLa_A485_30min_R1 7 SMSENAVR 8 0 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;H7C433;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 S(0.012)MS(0.988)ENAVR;S(0.161)MS(0.839)ENAVR;S(0.368)MS(0.632)ENAVR;S(0.009)MS(0.991)ENAVR;S(0.01)MS(0.99)ENAVR;S(0.003)MS(0.997)ENAVR;S(0.001)MS(0.999)ENAVR ;;;;;; 124.33 0.00062512 21556000000 12526804 15520727 10489188 12784066 12977761 14501164 18447342 20882915 12788647 24347840 TRUE FALSE FALSE 15313348.33 17335741.01 14369575.13 13482427.15 11685649.55 15260422.52 14505916.68 15761347.35 15355211.15 18278371.58 0.837785153 0.948429182 0.786151823 0.737616428 0.63931568 0.83488961 0.793610996 0.862294942 0.840075446 1 24.12363421 -8.307846951 0.957940706 0.999112369 0.796027834 0.385074555 0.075320182 1.242276659 2.114377769 0.080685466 0.026591544 4.92E-09 8.307846951 -0.203084535 SMS(ph)ENAVR ddPTM_HeLa_A486_30min_R1 11 SMSENAVR 8 0 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;H7C433;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 S(0.004)MS(0.996)ENAVR;S(0.277)MS(0.723)ENAVR;S(0.012)MS(0.988)ENAVR;S(0.404)MS(0.596)ENAVR;S(0.133)MS(0.867)ENAVR;S(0.14)MS(0.86)ENAVR;S(0.018)MS(0.982)ENAVR;S(0.003)MS(0.997)ENAVR;S(0.042)MS(0.958)ENAVR;S(0.007)MS(0.993)ENAVR;S(0.071)MS(0.929)ENAVR ;;;;;;;;;; 149.17 0.00025642 54505930000 28571530 32760050 29301380 10194564 40126380 31379530 34790890 35245730 39947040 37758700 TRUE FALSE FALSE 26568813.29 30164024.33 40647659.05 23733460.2 35093355.26 27508242.63 26085841.34 27221046.69 43409681.59 28303675.75 0.938705401 1.065728162 1.436126509 0.838529257 1.239886846 0.971896473 0.921641471 0.961749524 1.533711804 1 24.75448609 -8.990468921 0.004669788 1.288166633 0.893105842 0.000273715 0.221938394 1297106.025 1846.936662 79435.87005 76808.40091 1.02E-09 8.990468921 -0.395060791 SMS(ph)FQGIR ddPTM_HeLa_A485_30min_R1 6 SMSFQGIR 8 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 SMS(1)FQGIR;SMS(1)FQGIR;SMS(1)FQGIR;SMS(1)FQGIR;S(0.049)MS(0.951)FQGIR;S(0.02)MS(0.98)FQGIR ;;;;; 208.75 8.56E-07 2381723000 1229883 1292544 1540253 1453187 1744983 1161733 1586215 1413528 1323950 1786297 TRUE FALSE FALSE 1503466.23 1443695.777 2110056.68 1532570.926 1571246.366 1222559.543 1247307.207 1066858.042 1589654.621 1341006.032 1.121147999 1.076576647 1.573487836 1.142851627 1.171692243 0.911673411 0.930127961 0.795565431 1.185419441 1 20.3548843 -6.102604807 2.780511976 0.949073948 1.239815649 0.391442485 0.157113674 0.278903004 4.190317149 0.056141709 0.057398702 7.90E-07 6.102604807 0.290741701 SMS(ph)FQGIR ddPTM_HeLa_A486_30min_R1 4 SMSFQGIR 8 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 SMS(1)FQGIR;SMS(1)FQGIR;SMS(1)FQGIR;SMS(1)FQGIR ;;; 171.87 2.09E-05 2059560000 1026960 1004620 790712 354304 1131430 1064750 1200450 1284720 1060730 1039390 TRUE FALSE FALSE 954975.4072 925010.2524 1096896.862 824837.6175 989515.4992 933391.9706 900084.7129 992217.3012 1152674.93 779119.9787 1.225710331 1.187250074 1.407866429 1.058678561 1.270042518 1.198008004 1.15525816 1.273510279 1.479457544 1 19.57148598 -7.494231078 23.89374284 1.285313729 1.216394854 0 0.13730316 1321.521798 1102228.916 0.070674637 0.033823302 3.20E-08 7.494231078 -0.068918875 SMS(ph)GGHGLR ddPTM_HeLa_A485_30min_R1 11 SMSGGHGLR 9 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 S(0.061)MS(0.939)GGHGLR;S(0.003)MS(0.997)GGHGLR;S(0.065)MS(0.935)GGHGLR;S(0.04)MS(0.96)GGHGLR;SMS(1)GGHGLR;S(0.033)MS(0.967)GGHGLR;S(0.001)MS(0.999)GGHGLR;SMS(1)GGHGLR;SMS(1)GGHGLR;S(0.001)MS(0.999)GGHGLR;S(0.021)MS(0.979)GGHGLR ;;;;;;;;;; 133.89 0.00014912 5705560000 2252510 3100723 3125037 1987261 3815655 2796722 3666981 4147970 3035383 3162036 TRUE FALSE FALSE 2753573.078 3463325.582 4281118.23 2095820.036 3435754.991 2943154.039 2883500.553 3130673.854 3644556.526 2373798.618 1.159985964 1.458980368 1.803488382 0.882897151 1.447365823 1.239849925 1.214719956 1.318845596 1.535326754 1 21.17876612 -5.254625853 24.99508219 1.255741538 1.472634401 0.180981955 0.230786004 1033.083211 3789802.045 0.061796654 0.104071688 5.56E-06 5.254625853 0.216892862 SMS(ph)GGHGLR ddPTM_HeLa_A486_30min_R1 9 SMSGGHGLR 9 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 S(0.018)MS(0.982)GGHGLR;S(0.068)MS(0.932)GGHGLR;S(0.015)MS(0.985)GGHGLR;SMS(1)GGHGLR;SMS(1)GGHGLR;S(0.04)MS(0.96)GGHGLR;S(0.001)MS(0.999)GGHGLR;S(0.001)MS(0.999)GGHGLR;S(0.007)MS(0.993)GGHGLR ;;;;;;;; 130.01 0.0001798 4429710000 3213010 3307505 3064916 510335 3864621 2914966 3426082 3407742 2825030 2889848 TRUE FALSE FALSE 2987794.591 3045406.258 4251733.556 1188085.671 3379884.198 2555347.132 2568840.046 2631873.537 3069905.875 2166211.251 1.379272031 1.405867621 1.962751119 0.548462515 1.56027451 1.179638935 1.185867743 1.214966239 1.417177514 1 21.04674251 -5.235559982 24.98919756 1.185829401 1.564953859 0.303693224 0.292132973 1024.15649 988926.368 0.075829258 0.131282724 5.81E-06 5.235559982 0.379124458 SMS(ph)PFRGPK ddPTM_HeLa_A485_30min_R1 2 SMSPFRGPK 9 1 B4DZM6;Q99640-4;Q99640-3;Q99640;I3L4K3;I3L3P0;I3L136;A6NHV6;Q99640-2 B4DZM6 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase 1 0 S(0.01)MS(0.99)PFRGPK;S(0.014)MS(0.986)PFRGPK ; 131.83 0.00010987 408110000 554230 633440 360465 436640 506500 634880 814890 1105940 486870 979380 TRUE FALSE FALSE 677516.5514 707515.2978 493816.0037 460492.5376 456071.0816 668121.3351 640782.0945 834706.481 584580.3432 735238.5902 0.921492099 0.962293475 0.671640486 0.626317149 0.620303515 0.908713639 0.871529464 1.135286548 0.79508931 1 19.48785297 -6.451135826 6.662067361 0.952287716 0.758852466 0.318676741 0.13389317 0.325479734 25.18309517 0.051416132 0.044970272 3.54E-07 6.451135826 -0.193435251 SMS(ph)PNLLNR ddPTM_HeLa_A485_30min_R1 2 SMSPNLLNR 9 0 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;F8VVB8 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.005)MS(0.995)PNLLNR;S(0.001)MS(0.999)PNLLNR ; 148.28 8.25E-05 246930000 344790 462440 469980 343020 523880 470860 519840 557810 409380 445080 TRUE FALSE FALSE 421487.346 516518.3353 643845.1595 361758.314 471720.6677 495513.5015 408771.9373 421006.2229 491538.8109 334129.7471 1.261448134 1.54586157 1.926931574 1.082688139 1.411788899 1.482997266 1.223392831 1.260008205 1.471101616 1 18.3500489 -12.76626534 0.122378121 3.68E-16 1.628280071 0.256896262 0.21646266 145.9302175 1.551333633 38.84753072 2.165799804 1.71E-13 12.76626534 1.628280071 SMS(ph)PNLLNR ddPTM_HeLa_A486_30min_R1 2 SMSPNLLNR 9 0 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;F8VVB8 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.062)MS(0.938)PNLLNR;S(0.29)MS(0.71)PNLLNR ; 113.22 0.00078714 229463000 416980 455900 328150 144116 479080 399440 460890 513700 349860 477770 TRUE FALSE FALSE 387751.8553 419772.8236 455218.4682 335509.3312 418989.3192 350161.154 345570.4472 396741.724 380186.1465 358133.2822 1.082702654 1.172113413 1.271086745 0.936828125 1.169925667 0.977739773 0.964921342 1.107804674 1.061577254 1 18.45013707 -5.260535786 24.99992355 1.036532583 1.174982181 0.415100448 0.078179843 82.12600615 2272157.834 0.021413652 0.034509724 5.49E-06 5.260535786 0.138449598 SMS(ph)PTSTPK ddPTM_HeLa_A485_30min_R1 3 SMSPTSTPK 9 0 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 S(0.001)MS(0.653)PT(0.087)S(0.255)T(0.004)PK;SMS(0.806)PT(0.172)S(0.022)TPK;SMS(0.998)PTS(0.002)TPK ;; 150.21 7.12E-05 778810000 1220020 1460250 1137010 1769860 1703440 1588950 2163270 2274070 1321330 2187530 TRUE FALSE FALSE 1491409.24 1631013.535 1557637.314 1866542.97 1533839.532 1672144.965 1701069.692 1716350.767 1586508.811 1642219.03 0.908167067 0.993176614 0.948495472 1.136598064 0.934004237 1.018222865 1.035836062 1.0451412 0.966076256 1 20.64721513 -4.115488081 1.29910708 1.016457069 0.836928844 0.248819336 0.054078254 2.596146206 3.026534606 0.015248636 0.674785328 7.66E-05 4.115488081 -0.179528226 SMS(ph)PTSTPK ddPTM_HeLa_A486_30min_R1 2 SMSPTSTPK 9 0 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 SMS(0.938)PT(0.055)S(0.007)TPK;SMS(0.983)PT(0.016)S(0.001)TPK ; 141.1 0.00012631 280450000 1026960 1015600 660790 435860 1033470 1071080 1316220 1282990 831520 1291740 TRUE FALSE FALSE 954975.4072 935120.1572 916665.5846 1014704.107 903842.5559 938941.0395 986887.8344 990881.1845 903596.8231 968279.8962 0.986259666 0.965753974 0.946694843 1.047945032 0.933451742 0.969700025 1.01921752 1.023341689 0.933197959 1 19.88506462 -6.715780444 24.99941395 0.995884603 0.974693687 0.059809289 0.036515875 368.4519254 201735.973 0.013773122 0.010668587 1.92E-07 6.715780444 -0.021190916 SMSPT(ph)STPK ddPTM_HeLa_A486_30min_R1 1 SMSPTSTPK 9 0 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 SMS(0.439)PT(0.54)S(0.02)TPK 132.32 0.0010703 173750000 718960 703160 445070 276170 723200 730680 860750 898420 592240 879600 TRUE FALSE FALSE 668564.6167 647439.0407 617413.0234 642937.7169 632489.5124 640536.1306 645381.2459 693869.3784 643575.84 659342.4348 1.013986938 0.981946568 0.936407231 0.975119578 0.959273177 0.971477182 0.978825587 1.052365723 0.976087396 1 19.33066841 -7.026925736 24.34798122 1.011655079 0.971570051 0.295230813 0.025229678 601.7668151 544153.2578 0.011585361 0.006715755 9.40E-08 7.026925736 -0.040085028 SMSQVDVDS(ph)GIENMEVDENDRR ddPTM_HeLa_A485_30min_R1 3 SMSQVDVDSGIENMEVDENDRR 22 1 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SMSQVDVDS(1)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR ;; 237.98 7.33E-47 575658000 331135 419162 434027 336281 487485 459897 478106 560530 391051 437305 TRUE FALSE FALSE 404794.8383 468179.3497 594591.6487 354651.1795 438949.2817 483976.4958 375954.7473 423059.1386 469531.3488 328292.9115 1.233029481 1.426102524 1.811162008 1.080288873 1.337065975 1.474221583 1.145180825 1.288663641 1.430220795 1 18.32462407 -13.14703621 0.167628082 4.45E-15 1.454457512 0.238263383 0.192728016 142.1904602 1.729410055 48.68978671 0.7589325 7.13E-14 13.14703621 1.454457512 SMSQVDVDS(ph)GIENMEVDENDRR ddPTM_HeLa_A486_30min_R1 3 SMSQVDVDSGIENMEVDENDRR 22 1 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SMSQVDVDS(1)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR ;; 291.06 1.90E-87 636760000 415208 451189 399836 140345 505323 378361 457123 490114 384045 439302 TRUE FALSE FALSE 386104.0633 415435.1404 554663.2072 326730.2526 441940.6774 331682.6667 342745.9904 378525.7413 417334.3298 329297.9198 1.17250684 1.261578393 1.684381145 0.992202601 1.342069448 1.007241913 1.040838614 1.149493266 1.267345782 1 18.32903387 -5.300033517 24.99997034 1.122384096 1.361698377 0.339418844 0.164858945 637.8214217 413157.6363 0.04612515 0.068416127 5.01E-06 5.300033517 0.239314281 SMSSIPPYPASSLAS(ph)SSPPGSGR ddPTM_HeLa_A485_30min_R1 2 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPAS(0.048)S(0.048)LAS(0.298)S(0.298)S(0.298)PPGS(0.01)GR;SMSSIPPYPASSLAS(0.49)S(0.361)S(0.148)PPGS(0.001)GR ; 155.88 5.57E-10 325520000 108480 165371 142839 114556 174471 126774 166641 183477 138169 148500 TRUE FALSE FALSE 132611.0017 184709.6999 195681.0901 120813.9042 157100.0546 133411.6906 131036.789 138478.9781 165898.2509 111481.6829 1.189531753 1.656861424 1.75527571 1.083710804 1.409200601 1.196713999 1.175410934 1.24216799 1.488121156 1 16.76644716 -5.267290697 24.9988893 1.242061251 1.546186809 0.349924848 0.190215177 517.4032053 2210529.218 0.052165976 0.079756087 5.40E-06 5.267290697 0.304125558 SMSSIPPYPASSLAS(ph)SSPPGSGR ddPTM_HeLa_A486_30min_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPAS(0.054)S(0.054)LAS(0.302)S(0.302)S(0.25)PPGS(0.038)GR 91.475 0.0019397 231450000 34055 32588 31905 11697 38221 34498 37078 35912 30186 36848 TRUE FALSE FALSE 31667.92036 30005.6082 44259.47045 27231.20713 33426.96578 30241.98751 27800.69223 27735.62155 32802.54678 27621.02096 1.1465152 1.086332335 1.60238358 0.985887059 1.210200225 1.094890285 1.006504874 1.004149035 1.187593566 1 14.75347903 SMSSIPPYPASSLASS(ph)SPPGSGR ddPTM_HeLa_A486_30min_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPASSLAS(0.087)S(0.455)S(0.455)PPGS(0.002)GR 128.1 3.08E-06 198750000 53067 48436 52890 17130 61536 43582 55725 55756 46560 60127 TRUE FALSE FALSE 49347.27734 44597.75496 73370.42444 39879.5057 53817.58108 38205.29595 41782.0156 43061.57594 50595.85829 45070.80784 1.094883356 0.989504229 1.627892376 0.884818969 1.194067372 0.847672757 0.927030546 0.955420548 1.122586009 1 15.45990569 SMSSIPPYPASSLASSS(ph)PPGSGR ddPTM_HeLa_A485_30min_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPASSLAS(0.009)S(0.246)S(0.745)PPGSGR 218.25 6.15E-38 419490000 90342 123720 119540 92363 126690 108270 136000 169550 107510 132810 TRUE FALSE FALSE 110438.2662 138187.9778 163762.8205 97408.55681 114076.2988 113938.8498 106942.489 127967.5967 129086.2709 99702.91119 1.107673436 1.385997421 1.642507912 0.97698809 1.144162165 1.14278358 1.072611499 1.283489069 1.294709145 1 16.60534801 -5.27681424 24.95080162 1.141136549 1.379453408 0.350008591 0.154442706 902.0831 1463926.567 0.044469663 0.066223029 5.29E-06 5.27681424 0.238316859 SMSSIPPYPASSLASSS(ph)PPGSGR ddPTM_HeLa_A486_30min_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPASSLAS(0.016)S(0.07)S(0.914)PPGSGR 183.71 3.48E-23 0 25198 20138 21226 7175.6 28572 24551 24299 22157 17942 15537 TRUE FALSE FALSE 23431.75032 18542.19154 29445.27565 16705.15943 24988.23334 21522.14724 18219.13319 17112.33478 19497.22701 11646.43407 2.011924867 1.592091745 2.528265345 1.434358305 2.145569467 1.847960252 1.564352924 1.46931968 1.674094138 1 13.50760067 -8.055011786 0.399396004 0.949614266 1.994069406 0.473946027 0.293817343 1.242190366 0.514659386 0.455087719 0.231681977 8.81E-09 8.055011786 1.04445514 SMTEAEQQQLIDDHFLFDKPVS(ph)PLLLASGMAR ddPTM_HeLa_A485_30min_R1 2 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR 32 1 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 0 SMTEAEQQQLIDDHFLFDKPVS(1)PLLLASGMAR;SMTEAEQQQLIDDHFLFDKPVS(1)PLLLASGMAR ; 297.32 6.89E-93 478860000 121881 120324 102028 137352 145953 171296 213445 224344 99085 206412 TRUE FALSE FALSE 148993.008 134394.8451 139772.4029 144855.192 131421.4068 180264.7937 167840.7321 169323.2822 118970.4506 154957.2871 0.961510173 0.867302517 0.902006001 0.934807228 0.848113756 1.163319241 1.083141911 1.092709387 0.767762864 1 17.24151108 -6.237011847 24.97700277 1.031040747 0.902518597 0.252083572 0.101497205 1053.650066 1077351.157 0.033517389 0.03349984 5.79E-07 6.237011847 -0.128522149 SMTEAEQQQLIDDHFLFDKPVS(ph)PLLLASGMAR ddPTM_HeLa_A486_30min_R1 2 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR 32 1 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 0 SMTEAEQQQLIDDHFLFDKPVS(1)PLLLASGMAR;SMTEAEQQQLIDDHFLFDKPVS(1)PLLLASGMAR ; 267.73 2.02E-64 538910000 169642 206159 122216 99860 230703 220827 266502 243612 183585 291291 TRUE FALSE FALSE 157750.9718 189822.21 169541.3083 232479.1266 201766.0785 193583.6099 199820.3808 188146.8656 199498.2956 218349.8376 0.722468922 0.869348986 0.776466381 1.064709409 0.924049593 0.88657547 0.915138674 0.861676233 0.913663586 1 17.73628193 -4.534049377 1.350707266 0.923978206 0.712400748 0.441570952 0.069723922 0.809234253 1.899406904 0.020861342 0.206007436 2.92E-05 4.534049377 -0.211577458 SNAHYNLQNAFNLAEQHLGLTK ddPTM_HeLa_A485_30min_R1 1 SNAHYNLQNAFNLAEQHLGLTK 22 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 224.99 1.55E-35 11153000 16705 21541 17261 14154 25164 18081 25836 26989 19127 24843 FALSE FALSE TRUE 20420.96962 24060.03257 23646.56219 14927.19718 22658.5838 19027.6932 20315.92754 20369.90543 22965.61346 18650.0973 1.094952444 1.290075445 1.267905567 0.800381732 1.214931131 1.020246323 1.08932019 1.092214432 1.231393761 1 14.18689554 SNDRNS(ph)MDIQCEVDALLER ddPTM_HeLa_A485_30min_R1 12 SNDRNSMDIQCEVDALLER 19 1 Q02241;A0A2U3TZL8;H7BYN4;A0A2R8Y531;H0YME6;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 SNDRNS(1)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;S(0.025)NDRNS(0.975)MDIQCEVDALLER;S(0.025)NDRNS(0.975)MDIQCEVDALLER;S(0.002)NDRNS(0.998)MDIQCEVDALLER;S(0.007)NDRNS(0.993)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;S(0.001)NDRNS(0.999)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;S(0.232)NDRNS(0.768)MDIQCEVDALLER;S(0.026)NDRNS(0.974)MDIQCEVDALLER ;;;;;;;;;;; 313.22 7.15E-90 4693978000 852228 946090 974939 977129 1299577 896211 1212088 1283086 896352 1912863 TRUE FALSE FALSE 1041803.178 1056726.996 1335609.507 1030507.083 1170186.551 943135.2222 953115.497 968407.1467 1076241.625 1436021.458 0.725478838 0.735871313 0.930076288 0.717612594 0.814880965 0.656769589 0.663719537 0.674368159 0.749460684 1 20.45364588 -10.22473085 4.122656478 1.00016471 0.74111801 0.503378242 0.077201777 51528246.89 23.72692156 80606.79218 0.020363112 5.96E-11 10.22473085 -0.2590467 SNDRNS(ph)MDIQCEVDALLER ddPTM_HeLa_A486_30min_R1 13 SNDRNSMDIQCEVDALLER 19 1 Q02241;A0A2U3TZL8;H7BYN4;A0A2R8Y531;H0YME6;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(0.016)NDRNS(0.984)MDIQCEVDALLER;S(0.003)NDRNS(0.997)MDIQCEVDALLER;S(0.02)NDRNS(0.98)MDIQCEVDALLER;S(0.001)NDRNS(0.999)MDIQCEVDALLER;S(0.007)NDRNS(0.993)MDIQCEVDALLER;S(0.065)NDRNS(0.935)MDIQCEVDALLER;S(0.034)NDRNS(0.966)MDIQCEVDALLER;S(0.005)NDRNS(0.995)MDIQCEVDALLER;S(0.008)NDRNS(0.992)MDIQCEVDALLER;S(0.001)NDRNS(0.999)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;S(0.001)NDRNS(0.999)MDIQCEVDALLER ;;;;;;;;;;;; 354.06 4.49E-116 3314727000 595130 757331 620501 320596.4 866471 712535 802316 864026 693852 737060 TRUE FALSE FALSE 553414.4603 697317.3334 860775.6048 746364.6212 757790.1277 624629.6762 601568.0508 667306.1414 753995.65 552495.3785 1.00166351 1.262123378 1.557977927 1.350897492 1.371577315 1.130560907 1.088820059 1.207804024 1.364709424 1 19.07560287 -6.264295193 24.89030123 1.167019205 1.322428761 0.186451919 0.155345134 436.2527266 3802217.672 0.056077058 0.051640064 5.44E-07 6.264295193 0.155409556 SNDS(ph)GEEAEKEFIFV ddPTM_HeLa_A485_30min_R1 5 SNDSGEEAEKEFIFV 15 1 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 SNDS(1)GEEAEKEFIFV;S(0.001)NDS(0.999)GEEAEKEFIFV;SNDS(1)GEEAEKEFIFV;S(0.21)NDS(0.79)GEEAEKEFIFV;S(0.006)NDS(0.994)GEEAEKEFIFV ;;;; 215.49 2.70E-32 1049596000 1853620 1600500 1236710 2579610 2180630 1938890 3188570 2943890 1522720 3660060 TRUE FALSE FALSE 2265951.374 1787664.553 1694220.493 2720527.562 1963518.821 2040407.282 2507305.971 2221896.362 1828315.937 2747674.4 0.824679727 0.65061004 0.616601622 0.990120067 0.714611171 0.742594276 0.912519318 0.808646163 0.665404873 1 21.38977962 -14 0.23281747 2.2154656 0.747091293 0.258657066 0.113442854 235.4415978 2.356030972 135.5574628 0.19502304 1.00E-14 14 -1.468374307 SNDS(ph)GEEAEKEFIFV ddPTM_HeLa_A486_30min_R1 5 SNDSGEEAEKEFIFV 15 1 Q5VZK9-2;Q5VZK9 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 SNDS(1)GEEAEKEFIFV;SNDS(1)GEEAEKEFIFV;SNDS(1)GEEAEKEFIFV;S(0.054)NDS(0.946)GEEAEKEFIFV;S(0.001)NDS(0.999)GEEAEKEFIFV ;;;; 180.46 1.34E-16 975650000 2016250 2043170 1116300 1124350 1956800 2286220 2991720 2783080 1709760 3008260 TRUE FALSE FALSE 1874921.287 1881261.768 1548561.256 2617543.622 1711359.898 2004169.421 2243160.013 2149433.438 1857963.373 2254972.116 0.831460963 0.834272741 0.686731887 1.160787578 0.758927299 0.888777918 0.994761752 0.953197347 0.823940731 1 21.10467816 -5.209972548 24.99999585 0.930702683 0.789167029 0.2967469 0.109238161 476.4312948 231425.4624 0.028670834 0.049659254 6.17E-06 5.209972548 -0.141535654 SNEDS(ph)LILEK ddPTM_HeLa_A485_30min_R1 3 SNEDSLILEK 10 0 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 SNEDS(1)LILEK;SNEDS(1)LILEK;SNEDS(1)LILEK ;; 167.89 3.56E-07 460317000 856990 732140 517340 974530 958610 768140 1186580 1055240 619390 1266210 TRUE FALSE FALSE 1047624.469 817757.4042 708725.5943 1027766.106 863167.4225 808358.6226 933057.4895 796440.7354 743695.8916 950567.1499 1.102104643 0.860283678 0.745581829 1.081213575 0.908055178 0.850396127 0.981579775 0.837858468 0.782370705 1 19.85842902 -7.2841553 24.28289916 0.857585936 0.924352885 0.045974734 0.112961642 1764.178803 1885859.723 0.0606904 0.029192012 5.20E-08 7.2841553 0.066766949 SNEDS(ph)LILEK ddPTM_HeLa_A486_30min_R1 3 SNEDSLILEK 10 0 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 SNEDS(1)LILEK;SNEDS(1)LILEK;SNEDS(1)LILEK ;; 168.89 3.22E-07 531970000 891920 994730 534030 364939 862450 1016500 1281100 1132780 773640 1292630 TRUE FALSE FALSE 829401.0139 915903.9721 740820.7178 849596.435 754273.479 891094.565 960555.2299 874870.7224 840699.7381 968947.0344 0.855981787 0.945257005 0.764562656 0.876824434 0.778446553 0.919652503 0.991339254 0.902908716 0.867642614 1 19.88605828 -6.493714717 22.40602414 0.935683707 0.847397968 0.379047629 0.059219838 224.434716 172428.0245 0.020768433 0.018267284 3.21E-07 6.493714717 -0.088285739 SNETQNPHKPS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 SNETQNPHKPSPSR 14 1 A0A5S6SZ32;Q96LW4-2;Q96LW4 A0A5S6SZ32 PRIMPOL DNA-directed primase/polymerase protein 1 0 SNETQNPHKPS(0.972)PS(0.027)R;SNETQNPHKPS(0.807)PS(0.193)R ; 100.02 0.000338 175616000 112378 113767 91028 127150 152827 113095 166812 167880 100647 162038 TRUE FALSE FALSE 137376.0984 127071.061 124703.0452 134095.8825 137611.0073 119016.4793 131171.2535 126707.1668 120845.9297 121644.9087 1.129320576 1.044606489 1.025139864 1.102355076 1.13125168 0.978392607 1.078312729 1.041615043 0.993431875 1 16.89231641 -7.296863485 0.737928795 0.995437318 1.07678816 0.308219194 0.043949537 0.911907766 0.954998915 0.041680575 0.019492896 5.05E-08 7.296863485 0.081350842 SNETQNPHKPS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 SNETQNPHKPSPSR 14 1 A0A5S6SZ32;Q96LW4-2;Q96LW4 A0A5S6SZ32 PRIMPOL DNA-directed primase/polymerase protein 1 0 SNETQNPHKPS(0.979)PS(0.021)R 95.767 0.00048382 100510000 52968 43264 29950 16732 50425 49782 61340 58788 38866 62476 TRUE FALSE FALSE 49255.21673 39835.60308 41547.44209 38952.94159 44100.22631 43640.40299 45992.08321 45403.25573 42234.93617 46831.60295 1.051751672 0.8506137 0.887166774 0.831766139 0.941676636 0.931857981 0.982073649 0.969500356 0.901846905 1 15.5151948 -5.978808596 24.91058543 0.95449698 0.898444868 0.13598848 0.060584403 425.9132415 500660.1024 0.018505222 0.020981194 1.05E-06 5.978808596 -0.056052112 SNFSSGPGFPEYGYPADT(ph)VWPAMEQVSSRPTSPEKFSVPHVCAR ddPTM_HeLa_A485_30min_R1 1 SNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCAR 44 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SNFSSGPGFPEYGY(0.009)PADT(0.19)VWPAMEQVS(0.19)S(0.19)RPT(0.19)S(0.19)PEKFS(0.042)VPHVCAR 80.125 0.00024872 367980000 31623 35965 27018 52870 56393 52368 89391 102680 35591 86212 TRUE FALSE FALSE 38657.42725 40170.7939 37013.08251 55758.15423 50778.31491 55109.9075 70291.88259 77497.569 42733.78724 64720.93501 0.597294017 0.620676971 0.571887327 0.861516513 0.784573259 0.851500484 1.086076438 1.197411147 0.660277656 1 15.98194483 -5.692270978 0.950026908 0.989914285 0.578178951 0.534719572 0.140771699 0.444546398 0.853753353 0.066029529 0.11413466 2.03E-06 5.692270978 -0.411735334 SNFSSGPGFPEYGYPADTVWPAMEQVS(ph)S(ph)RPTSPEKFSVPHVCAR ddPTM_HeLa_A486_30min_R1 1 SNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCAR 44 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 0 SNFSSGPGFPEYGYPADT(0.017)VWPAMEQVS(0.453)S(0.484)RPT(0.49)S(0.463)PEKFS(0.094)VPHVCAR 125.67 3.15E-08 643060000 62368 51893 41424 31165 83902 89481 123200 111830 59812 107430 TRUE FALSE FALSE 57996.32527 47780.80969 57464.48217 72553.69499 73378.2288 78441.744 92374.05692 86368.75023 64996.55232 80528.82875 0.720193329 0.593337944 0.713588948 0.900965482 0.911204471 0.974082763 1.147093015 1.072519638 0.807121541 1 16.29721773 -5.408286335 1.430449276 1.007067479 0.644310518 0.709633936 0.089135308 0.227863366 0.924803621 0.031699457 0.063054514 3.91E-06 5.408286335 -0.362756961 SNFSSGPGFPEYGYPADTVWPAMEQVS(ph)SRPTSPEKFSVPHVCAR ddPTM_HeLa_A485_30min_R1 1 SNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCAR 44 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SNFSSGPGFPEYGY(0.003)PADT(0.049)VWPAMEQVS(0.225)S(0.225)RPT(0.225)S(0.225)PEKFS(0.049)VPHVCAR 82.311 9.72E-05 459390000 23349 28418 26560 30399 44114 36279 62662 67638 27938 61384 TRUE FALSE FALSE 28542.9045 31741.2379 36385.64925 32059.6204 39721.85527 38178.51234 49273.7518 51049.67445 33544.90034 46082.09849 0.619392463 0.688797579 0.789583167 0.695706607 0.861980174 0.828489014 1.069260156 1.107798389 0.727937777 1 15.4919188 -6.056288322 1.221944344 0.978284634 0.689672239 0.547797049 0.107998443 0.346934953 1.078500242 0.049485809 0.053665233 8.78E-07 6.056288322 -0.288612396 SNFSSGPGFPEYGYPADTVWPAMEQVS(ph)SRPTSPEKFSVPHVCAR ddPTM_HeLa_A486_30min_R1 2 SNFSSGPGFPEYGYPADTVWPAMEQVSSRPTSPEKFSVPHVCAR 44 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SNFSSGPGFPEYGYPADT(0.009)VWPAMEQVS(0.234)S(0.234)RPT(0.234)S(0.234)PEKFS(0.055)VPHVCAR;SNFSSGPGFPEYGYPADT(0.003)VWPAMEQVS(0.236)S(0.236)RPT(0.236)S(0.236)PEKFS(0.055)VPHVCAR ; 134.26 8.32E-09 590040000 122592 102183 70104 55856 149464 135319 190743 196917 99492 206294 TRUE FALSE FALSE 113998.9339 94085.64694 97250.14625 130035.5908 130716.8314 118624.7176 143017.0839 152083.2978 108116.0467 154636.6397 0.737205194 0.608430493 0.628894591 0.840910609 0.845316037 0.767119086 0.924858974 0.983488118 0.699161899 1 17.23852267 -5.308077115 5.316742054 0.864066863 0.652932956 0.520940413 0.091307124 0.155377233 10.6547476 0.025375394 0.03888778 4.92E-06 5.308077115 -0.211133907 SNGELSES(ph)PGAGK ddPTM_HeLa_A485_30min_R1 3 SNGELSESPGAGK 13 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 SNGELS(0.005)ES(0.995)PGAGK;SNGELS(0.005)ES(0.995)PGAGK;SNGELS(0.024)ES(0.976)PGAGK ;; 209.89 7.06E-22 651340000 1156260 953450 747130 1495380 1378500 991750 1628260 1488100 970160 2043030 TRUE FALSE FALSE 1413466.048 1064947.684 1023524.478 1577068.823 1241251.7 1043676.496 1280368.949 1123141.142 1164862.213 1533740.22 0.921581132 0.694346845 0.667338878 1.028250288 0.809297222 0.680478012 0.834801704 0.732289032 0.759491208 1 20.54862271 -10.33870955 5.661585365 1.000038024 0.789130146 0.249458189 0.108141555 5.20E-05 6.08E-06 0.10494258 0.025447732 4.58E-11 10.33870955 -0.210907879 SNGELSES(ph)PGAGK ddPTM_HeLa_A486_30min_R1 3 SNGELSESPGAGK 13 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 SNGELS(0.001)ES(0.999)PGAGK;SNGELS(0.038)ES(0.962)PGAGK;SNGELS(0.001)ES(0.999)PGAGK ;; 219.53 2.55E-27 412730000 1350830 1232310 641190 558310 1104780 1294230 1707320 1456760 991730 1731300 TRUE FALSE FALSE 1256143.793 1134657.268 889475.9397 1299773.895 966208.1907 1134561.061 1280130.478 1125087.549 1077693.955 1297771.211 0.967923916 0.87431225 0.685387326 1.001543172 0.744513503 0.874238118 0.9864069 0.866938286 0.830419064 1 20.30760464 -6.530995422 24.92588702 0.912776865 0.85005174 0.088299562 0.098791703 507.636542 1558907.271 0.036868857 0.028609551 2.94E-07 6.530995422 -0.062725125 SNGVTPGTQS(ph)SPAPSTR ddPTM_HeLa_A485_30min_R1 1 SNGVTPGTQSSPAPSTR 17 0 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 0 SNGVT(0.001)PGT(0.143)QS(0.428)S(0.428)PAPSTR 65.298 0.0064746 0 40263 94584 138670 26349 116080 75917 64687 88918 95200 42648 TRUE FALSE FALSE 49219.36544 105644.776 189969.8035 27788.37915 104522.6676 79891.89673 50866.09401 67110.72108 114305.7668 32016.63848 1.537305844 3.299683572 5.933471238 0.867935563 3.264635908 2.495324323 1.588739369 2.096120151 3.570198878 1 14.96653422 -5.296228923 24.99823971 2.212237045 3.561110759 0.212253393 1.284635067 989.9798475 711353.9986 0.359837655 0.533752608 5.06E-06 5.296228923 1.348873714 SNGVTPGTQSS(ph)PAPSTR ddPTM_HeLa_A486_30min_R1 2 SNGVTPGTQSSPAPSTR 17 0 Q8TDW5;Q8TDW5-2 Q8TDW5 SYTL5 Synaptotagmin-like protein 5 1 0 SNGVTPGT(0.003)QS(0.289)S(0.708)PAPSTR;SNGVTPGT(0.052)QS(0.235)S(0.712)PAPSTR ; 140.28 1.43E-06 159337000 194960 189125 140613 63064 202874 165704 189911 187767 162349 217403 TRUE FALSE FALSE 181294.3108 174138.0462 195062.1193 146816.1791 177427.6512 145261.1252 142393.2591 145016.553 176421.542 162963.8737 1.112481599 1.068568402 1.196965406 0.900912427 1.088754502 0.891370105 0.873771934 0.889869329 1.082580685 1 17.31419265 -5.266182992 24.99134126 0.955230949 1.120261464 0.4757663 0.079122304 342.0399994 1802010.962 0.022307309 0.034292975 5.42E-06 5.266182992 0.165030515 SNIHSSVMAS(ph)PGGLSAVR ddPTM_HeLa_A485_30min_R1 2 SNIHSSVMASPGGLSAVR 18 0 Q9NQW6;Q9NQW6-2;H7C3S1;H7C1C2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 SNIHSSVMAS(0.99)PGGLS(0.01)AVR;S(0.001)NIHS(0.002)S(0.002)VMAS(0.992)PGGLS(0.003)AVR ; 95.223 0.00039781 329158000 155831 352640 416620 86791 525430 204557 242841 263000 274340 153099 TRUE FALSE FALSE 190495.0683 393878.1804 570745.075 91532.17256 473116.3443 215267.2882 190956.0365 198498.8376 329397.5216 114934.2369 1.65742666 3.42698739 4.965840384 0.796387352 4.11640915 1.872960521 1.661437372 1.727064476 2.865965186 1 16.81044909 -6.397811482 15.27515088 1.85893499 3.00432537 0.198101813 1.173043798 2.053986697 243.1024479 0.403294685 0.355658238 4.00E-07 6.397811482 1.14539038 SNIHSSVMAS(ph)PGGLSAVR ddPTM_HeLa_A486_30min_R1 1 SNIHSSVMASPGGLSAVR 18 0 Q9NQW6;Q9NQW6-2;H7C3S1;H7C1C2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 SNIHSSVMAS(1)PGGLSAVR 96.052 0.00037188 102570000 100760 121890 141780 16946 162160 73993 88617 85000 100030 57610 TRUE FALSE FALSE 93697.24433 112230.9925 196681.013 39451.1444 141820.3807 64864.49597 66444.0893 65647.35554 108700.6809 43184.08102 2.169717222 2.598897321 4.554479529 0.913557577 3.284089353 1.502046459 1.538624598 1.520174888 2.517147022 1 15.39821197 -5.988361182 1.170401716 1.643635907 2.864809211 0.219775589 0.944968952 0.732150786 2.11293119 0.422473444 0.491947346 1.03E-06 5.988361182 1.221173304 SNLGSVVLQLK ddPTM_HeLa_A486_30min_R1 1 SNLGSVVLQLK 11 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 121.68 0.00346 15584000 16780 18986 12616 8682 19169 17961 19377 17025 12580 17326 FALSE FALSE TRUE 15603.80865 17481.48021 17501.25307 20212.13476 16764.64528 15745.15443 14528.66965 13148.77915 13670.44453 12987.45683 1.201452206 1.346027975 1.347550433 1.55628119 1.290833571 1.212335459 1.118669332 1.012421395 1.052588256 1 13.66483133 -6.62924497 1.601187548 1.025954645 1.361744111 0.74808254 0.083995003 0.19899876 1.040977751 0.046259748 0.031413052 2.35E-07 6.62924497 0.335789466 SNMS(ph)PHGLPAR ddPTM_HeLa_A485_30min_R1 4 SNMSPHGLPAR 11 0 H0Y4T7;E7ESY4;Q13330-3;Q13330 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 SNMS(1)PHGLPAR;SNMS(1)PHGLPAR;S(0.001)NMS(0.999)PHGLPAR;S(0.001)NMS(0.999)PHGLPAR ;;; 130.47 3.10E-05 2163340000 1302670 1838020 1668330 1273350 2188520 1656390 2006460 2412460 1650840 1967520 TRUE FALSE FALSE 1592444.447 2052960.45 2285514.692 1342909.886 1970623.264 1743116.019 1577763.43 1820800.402 1982148.446 1477053.474 1.078122408 1.389902591 1.547347292 0.909181631 1.334158377 1.180130612 1.068183013 1.232724769 1.341961196 1 20.49429063 -5.250375267 24.99956277 1.167258975 1.343601913 0.201746631 0.167737475 1257.005983 2840221.552 0.044862617 0.076813613 5.62E-06 5.250375267 0.176342938 SNMS(ph)PHGLPAR ddPTM_HeLa_A486_30min_R1 5 SNMSPHGLPAR 11 0 H0Y4T7;E7ESY4;Q13330-3;Q13330 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 SNMS(1)PHGLPAR;S(0.001)NMS(0.999)PHGLPAR;S(0.118)NMS(0.882)PHGLPAR;S(0.011)NMS(0.989)PHGLPAR;S(0.247)NMS(0.753)PHGLPAR ;;;; 130.72 3.03E-05 2913870000 1999770 2029750 1629330 504523 2233780 1772170 2064840 2082250 1748200 2040740 TRUE FALSE FALSE 1859596.45 1868905.218 2260250.211 1174555.041 1953598.483 1553537.684 1548195.192 1608167.13 1899735.384 1529725.421 1.215640679 1.221725933 1.477552886 0.767820829 1.277090945 1.015566364 1.012073913 1.051278294 1.241879985 1 20.54484129 -5.243552097 24.99434458 1.060547496 1.296648414 0.379168514 0.147813562 907.7961956 1268484.677 0.038346009 0.066233286 5.71E-06 5.243552097 0.236100918 SNPKS(ph)PQKPIVR ddPTM_HeLa_A485_30min_R1 2 SNPKSPQKPIVR 12 2 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YES9;H7C5K3;A0A2R8Y467 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.365)NPKS(0.635)PQKPIVR;S(0.022)NPKS(0.978)PQKPIVR ; 63.062 0.010462 1499530000 1993100 1701040 1050680 2826200 2362930 2182610 3345100 3390200 1591710 3655300 TRUE FALSE FALSE 2436458.219 1899961.831 1439370.254 2980588.15 2127668.392 2296888.085 2630392.058 2558748.134 1911151.597 2744100.981 0.887889417 0.692380435 0.524532539 1.086180199 0.775360822 0.837027537 0.958562413 0.932454072 0.696458188 1 21.38790214 -5.257761422 24.99504222 0.890063937 0.700678776 0.313236484 0.132903561 402.8010694 2737386.646 0.035934495 0.059300075 5.52E-06 5.257761422 -0.189385161 SNPKS(ph)PQKPIVR ddPTM_HeLa_A486_30min_R1 1 SNPKSPQKPIVR 12 2 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8YES9;H7C5K3;A0A2R8Y467 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.004)NPKS(0.996)PQKPIVR 103.79 0.00029678 846470000 990390 960000 445570 515260 1026200 1182600 1393300 1285400 769830 1619200 TRUE FALSE FALSE 920968.7754 883926.1037 618106.6368 1199551.32 897484.4271 1036702.836 1044681.603 992742.4801 836559.4842 1213741.781 0.758784768 0.728265367 0.509257114 0.988308501 0.739436049 0.854137884 0.860711578 0.817919014 0.689240082 1 20.2110301 -5.264061281 24.98603924 0.838394322 0.671718718 0.371934655 0.109072162 260.6494109 2483925.212 0.029414104 0.045941259 5.44E-06 5.264061281 -0.166675604 SNQNGKDSKPS(ph)STPR ddPTM_HeLa_A485_30min_R1 1 SNQNGKDSKPSSTPR 15 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 SNQNGKDS(0.044)KPS(0.338)S(0.338)T(0.281)PR 57.338 0.0158 136690000 114350 352740 69862 61834 240250 521640 639060 2400200 69061 79418 TRUE FALSE FALSE 139786.763 393989.8746 95706.861 65211.83485 216329.8664 548952.2638 502519.6104 1811547.187 82920.90923 59620.55418 2.344606905 6.608289372 1.605266209 1.093781092 3.628444408 9.207433097 8.428630315 30.38460832 1.390810776 1 15.86352216 -6.275571305 3.599125147 10 2.986436736 0.173603357 7.695107949 0.476297792 13.46442213 2.796782177 2.578677408 5.30E-07 6.275571305 -7.013563264 SNQNGKDSKPSS(ph)TPR ddPTM_HeLa_A485_30min_R1 1 SNQNGKDSKPSSTPR 15 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 SNQNGKDS(0.018)KPS(0.047)S(0.54)T(0.395)PR 55.186 0.018099 975590000 314440 834340 194260 178580 565540 1017500 1386800 4640900 157010 270670 TRUE FALSE FALSE 384386.0932 931908.8052 266124.8578 188335.3732 509232.8519 1070774.727 1090498.851 3502711.998 188520.4668 203196.9503 1.891692236 4.586234212 1.309689232 0.92686122 2.506104797 5.269639751 5.366708748 17.23801461 0.927772127 1 17.63251922 -1.320776628 15.52870957 4.42420569 2.637549871 0 4.709539488 0 0 1.115799043 0 0.047777495 1.320776628 -1.786655819 SNQNGKDSKPSS(ph)TPR ddPTM_HeLa_A486_30min_R1 2 SNQNGKDSKPSSTPR 15 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 S(0.001)NQNGKDS(0.021)KPS(0.084)S(0.447)T(0.447)PR;SNQNGKDS(0.018)KPS(0.083)S(0.504)T(0.394)PR ; 61.102 0.011776 255280000 2215660 439210 458470 702950 1092290 755860 1423130 1381960 440810 1938140 TRUE FALSE FALSE 2060353.676 404405.4 636001.8623 1636503.125 955284.803 662609.6782 1067047.822 1067317.876 479019.7657 1452817.129 1.418178265 0.278359466 0.437771451 1.126434355 0.657539606 0.456086086 0.73446809 0.734653973 0.329717868 1 20.47042169 -4.243565185 24.21230122 0.637876456 1.418179277 0.442996698 0.261955871 2351.608902 3185403.415 0.06468903 1.912423675 5.71E-05 4.243565185 0.780302822 SNQNGKDSKPSST(ph)PR ddPTM_HeLa_A485_30min_R1 1 SNQNGKDSKPSSTPR 15 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 1 0 SNQNGKDS(0.028)KPS(0.064)S(0.288)T(0.62)PR 50.226 0.023722 961770000 299220 847850 183620 178550 608640 1097700 1449100 5025600 174660 273270 TRUE FALSE FALSE 365780.4567 946998.6822 251548.6791 188303.7344 548041.6645 1155173.875 1139487.947 3793063.72 209712.6599 205148.8182 1.783000555 4.616154705 1.226176594 0.917888468 2.671434666 5.630906797 5.554445583 18.48932767 1.022246493 1 17.64631132 -6.505283294 2.208218183 7.97695079 2.229406424 0.137466816 4.70168162 0.465369934 4.542815978 1.953093459 1.528388994 3.12E-07 6.505283294 -5.747544366 SNQSHLVGVPKPG ddPTM_HeLa_A485_30min_R1 1 SNQSHLVGVPKPG 13 1 C9JMS1 C9JMS1 AFF3 0 0 76.326 0.018268 201760000 205300 176280 205780 260080 373350 219310 306400 331490 230810 376530 FALSE FALSE TRUE 250968.2767 196894.4126 281906.5852 274287.5118 336177.9631 230792.7325 240935.1369 250191.5577 277131.4499 282668.0005 0.88785528 0.696557135 0.997306327 0.970352185 1.18930322 0.816479871 0.852360849 0.885107466 0.980413239 1 18.10874905 -4.773531724 24.99762408 0.956699049 0.792206188 0.288849995 0.105994417 260.977139 539501.6688 0.029010627 0.061123152 1.68E-05 4.773531724 -0.164492861 SNQSHLVGVPKPG ddPTM_HeLa_A486_30min_R1 2 SNQSHLVGVPKPG 13 1 C9JMS1 C9JMS1 AFF3 0 0 ; ; 67.519 0.031475 528700000 381540 709560 556140 297110 971060 690530 878300 948360 566650 635380 FALSE FALSE TRUE 354796.0163 653331.8814 771492.3019 691687.0951 849260.6 605339.4294 658540.0503 732439.1306 615767.6782 476276.7124 0.744936729 1.371748533 1.619840487 1.452279898 1.783124343 1.270982632 1.382683707 1.537843677 1.292877989 1 18.86144048 -10.08525856 13.45247126 1.000000247 1.405513449 0.159608416 0.260198504 0 0 0.252393467 0.061214407 8.22E-11 10.08525856 0.405513202 SNQSLGWGDSSKPVS(ph)SPDWNK ddPTM_HeLa_A485_30min_R1 1 SNQSLGWGDSSKPVSSPDWNK 21 1 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 SNQSLGWGDSSKPVS(0.5)S(0.5)PDWNK 67.496 0.00048372 0 64330 47266 43144 124770 67214 51540 76707 58021 47284 143860 TRUE FALSE FALSE 78639.98656 52793.34754 59104.76097 131585.8692 60521.93816 54238.5547 60317.92281 43791.25878 56773.46509 107998.3495 0.728159151 0.488834762 0.547274669 1.218406297 0.56039688 0.502216515 0.55850782 0.405480815 0.525688266 1 16.72064974 -10.58015017 6.931813493 1.000474171 0.614294508 0.22175006 0.216374866 0.001668485 0.000101057 0.220457138 0.053406126 2.63E-11 10.58015017 -0.386179663 SNRNS(ph)IER ddPTM_HeLa_A485_30min_R1 2 SNRNSIER 8 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 SNRNS(1)IER;SNRNS(1)IER ; 126.76 0.00028841 663590000 413000 453720 289470 504670 302310 458960 460310 679900 442990 638500 TRUE FALSE FALSE 504870.4252 506778.6072 396556.9989 532238.8442 272210.9549 482990.4359 361961.0081 513153.459 531894.0297 479333.7007 1.053275462 1.057256367 0.827308821 1.110372259 0.567894464 1.007628788 0.755133652 1.07055577 1.109652897 1 18.87067085 -9.555884818 8.532041424 0.999993722 0.94333487 0.005574755 0.170523993 0 0 0.161540507 0.039179328 2.78E-10 9.555884818 -0.056658853 SNRNS(ph)IER ddPTM_HeLa_A486_30min_R1 2 SNRNSIER 8 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 SNRNS(1)IER;S(0.001)NRNS(0.999)IER ; 103.75 0.00077343 140617000 123784 61270 122491 56081 73999 194481 104669 93036 164069 164301 TRUE FALSE FALSE 115107.3808 56414.74206 169922.7956 130559.4022 64717.35541 170487.9116 78479.70912 71853.73376 178290.633 123158.9602 0.934624494 0.458064456 1.379703071 1.060088539 0.525478254 1.38429158 0.637222895 0.583422706 1.447646462 1 16.91016207 -4.736879207 24.99968513 0.973002576 0.696344856 0.110805796 0.338602636 554.2155964 564124.6707 0.083774507 0.221427874 1.83E-05 4.736879207 -0.27665772 SNS(ph)APLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_A485_30min_R1 2 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 SNS(1)APLIHGLSDTSPVFQAEAPSAR;S(0.034)NS(0.966)APLIHGLSDTSPVFQAEAPSAR ; 273.39 2.97E-75 1046200000 324190 405240 379480 301182 492520 384940 505200 496040 341970 446080 TRUE FALSE FALSE 396304.9471 452629.2929 519865.4435 317634.81 443482.9795 405094.8632 397259.8929 374385.4122 410600.2423 334880.4655 1.18342211 1.3516145 1.552391068 0.948502056 1.324302326 1.209670031 1.186273712 1.117967307 1.226109865 1 18.3532867 -8.265971863 0.12531367 0.798271709 1.466620496 0.239117396 0.144080784 17.40898347 1.225684295 3.630157781 2.31974833 5.42E-09 8.265971863 0.668348787 SNS(ph)DESNFSEK ddPTM_HeLa_A486_30min_R1 1 SNSDESNFSEK 11 0 A0A087WWW9;O95999 A0A087WWW9 BCL10 B-cell lymphoma/leukemia 10 1 0 S(0.007)NS(0.989)DES(0.003)NFSEK 69.92 0.0089678 0 117810 105440 80917 31609 130750 145170 164240 148340 112590 131360 TRUE FALSE FALSE 109552.1274 97084.55039 112250.2294 73587.34943 114350.1158 127260.4014 123145.4148 114566.2202 122349.3919 98466.60099 1.112581589 0.98596427 1.139982779 0.747333093 1.161308653 1.292422 1.250631317 1.163503351 1.242547124 1 16.58734684 -5.97780451 24.99960944 1.206398777 0.999510824 0.358578179 0.123043965 234.4755311 264097.2885 0.036487294 0.041370092 1.05E-06 5.97780451 -0.206887953 SNS(ph)EDKLNSK ddPTM_HeLa_A485_30min_R1 1 SNSEDKLNSK 10 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 S(0.004)NS(0.996)EDKLNSK 118.47 0.00016648 285500000 501390 289150 178170 800580 331370 409080 705960 696280 324880 1080900 TRUE FALSE FALSE 612922.4757 322963.5772 244082.4973 844313.6582 298377.6393 430498.7962 555125.8788 525516.2383 390080.436 811451.5225 0.755340841 0.398007236 0.300797387 1.040497965 0.367708521 0.530529285 0.684114656 0.647624933 0.480719335 1 19.63014538 -11.21590599 2.170778346 2.247494288 0.57603824 0.272648899 0.206564289 10601773.29 1969325.925 64888766.42 0.051566302 6.08E-12 11.21590599 -1.671456048 SNS(ph)EDKLNSK ddPTM_HeLa_A486_30min_R1 1 SNSEDKLNSK 10 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 S(0.004)NS(0.996)EDKLNSK 101.3 0.00072755 316490000 470390 333520 122620 275100 255430 588480 633120 509670 319330 846200 TRUE FALSE FALSE 437418.0901 307090.6605 170101.7479 640446.7028 223391.5876 515879.3208 474706.6795 393629.267 347009.7815 634306.0122 0.689601047 0.484136449 0.26816985 1.009680959 0.352182674 0.813297227 0.748387482 0.620566823 0.547069987 1 19.27481949 -14 0.172422511 2.475363527 0.528964228 0.235311317 0.207514798 195.0951194 1.849089841 98.96333296 0.708038574 1.00E-14 14 -1.946399299 SNS(ph)FIGVPNGEVEMPLK ddPTM_HeLa_A485_30min_R1 1 SNSFIGVPNGEVEMPLK 17 0 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 0 S(0.132)NS(0.868)FIGVPNGEVEMPLK 176.46 9.54E-13 22035000 35922 30379 25216 55080 47357 32759 47140 43629 41609 67842 TRUE FALSE FALSE 43912.72497 33931.55979 34544.44773 58088.88093 42641.9708 34474.21058 37068.1539 32928.91934 49959.54464 50930.23794 0.86221323 0.666236035 0.678269907 1.140557816 0.837262352 0.676890821 0.727822123 0.64654949 0.980940727 1 15.63623484 -7.856194836 8.520050848 0.996756977 0.781321225 0.268053359 0.139508974 0.403633209 31.92218013 0.141891413 0.036700219 1.39E-08 7.856194836 -0.215435752 SNS(ph)FNNPLGNR ddPTM_HeLa_A486_30min_R1 1 SNSFNNPLGNR 11 0 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 S(0.027)NS(0.973)FNNPLGNR 69.716 0.013781 696950000 135260 171710 125220 97876 227410 160230 194620 168340 103800 124390 TRUE FALSE FALSE 125778.9725 158103.0742 173708.5375 227860.2744 198886.1173 140462.4517 145924.0175 130012.6568 112797.4676 93241.93436 1.348952843 1.69562199 1.862987278 2.443753188 2.133011489 1.506430049 1.565004185 1.394358212 1.209728952 1 16.50869131 -7.209851397 1.067283224 1.077598475 1.887719971 0.524963293 0.284124279 0.474183604 0.960863103 0.274482525 0.111777249 6.17E-08 7.209851397 0.810121497 SNS(ph)FSDER ddPTM_HeLa_A485_30min_R1 6 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SNS(0.999)FS(0.001)DER;SNS(0.998)FS(0.002)DER;S(0.061)NS(0.935)FS(0.004)DER;S(0.017)NS(0.901)FS(0.082)DER;S(0.005)NS(0.966)FS(0.029)DER;S(0.009)NS(0.984)FS(0.007)DER ;;;;; 187.35 5.58E-06 70849800000 38821540 38170960 30172520 41419480 37882000 32681540 39578170 32292310 33010130 55237920 TRUE FALSE FALSE 47457257.64 42634721.73 41334590.73 43682121.31 34110335.07 34392694.9 31121970.66 24372570.34 39634960.3 41468123.12 1.144427432 1.028132419 0.996779879 1.053390364 0.822567613 0.829376695 0.750503479 0.587742307 0.955793446 1 25.30549942 -5.786902729 4.810689313 0.797803585 1.051080199 0.497829147 0.112082056 0.149999063 8.512378072 0.034343199 0.040906982 1.63E-06 5.786902729 0.253276614 SNS(ph)FSDER ddPTM_HeLa_A486_30min_R1 8 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SNS(0.999)FS(0.001)DER;SNS(1)FSDER;S(0.105)NS(0.865)FS(0.031)DER;S(0.026)NS(0.869)FS(0.106)DER;S(0.121)NS(0.865)FS(0.014)DER;S(0.049)NS(0.813)FS(0.139)DER;S(0.021)NS(0.903)FS(0.076)DER;S(0.01)NS(0.871)FS(0.119)DER ;;;;;;; 204.67 1.37E-06 1.22E+11 40804630 51197800 34182340 14580350 42504280 47673890 48862260 45872850 41935880 50134020 TRUE FALSE FALSE 37944436.15 47140699.87 47418657.48 33943791.65 37172996.87 41792370.16 36636405.74 35428603.45 45570915.84 37580135.07 1.00969398 1.254404748 1.261801145 0.903237617 0.989166132 1.112086747 0.974887548 0.942748167 1.212633104 1 25.16346692 -5.253806085 24.99965679 1.017631938 1.183210436 0.316592525 0.104853319 676.4847727 2215536.383 0.028248454 0.047766061 5.57E-06 5.253806085 0.165578497 SNS(ph)FSDEREFSGPSTPTGTLEFEGGEVSLEGGKVK ddPTM_HeLa_A485_30min_R1 1 SNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGKVK 35 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.166)NS(0.824)FS(0.009)DEREFS(0.002)GPSTPTGTLEFEGGEVSLEGGKVK 96.474 4.44E-05 323130000 7206.7 21233 10560 12587 17208 47445 61384 232620 12300 22744 TRUE FALSE FALSE 8809.805552 23716.01465 14466.58344 13274.59594 15494.7111 49929.14684 48268.80694 175569.5803 14768.49718 17074.33937 0.515967579 1.388985783 0.847270464 0.777458832 0.907485248 2.924221298 2.826979474 10.28265729 0.864952772 1 14.05954214 -6.580335563 2.152544949 4.58098607 0.915283338 0.210401017 2.489265441 0.388741756 3.649749676 1.06847863 0.791056182 2.63E-07 6.580335563 -3.665702731 SNS(ph)GLGGEVSGVMSKPNVDPQPWFQDGPK ddPTM_HeLa_A486_30min_R1 1 SNSGLGGEVSGVMSKPNVDPQPWFQDGPK 29 1 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 S(0.163)NS(0.837)GLGGEVSGVMSKPNVDPQPWFQDGPK 185.97 7.29E-21 224040000 116690 109880 52998 65399 107510 155320 209570 214800 106320 209870 TRUE FALSE FALSE 108510.6336 101172.7086 73520.24494 152252.1771 94025.09331 136158.1976 157133.3694 165894.7291 115535.9032 157317.186 0.689757021 0.64311288 0.467337656 0.967803843 0.597678459 0.8655011 0.998831554 1.054523878 0.734413742 1 17.26331676 -6.157008173 1.060438273 0.95648672 0.637963222 0.432870967 0.144739459 0.476815586 1.13259381 0.074937004 0.075030447 6.97E-07 6.157008173 -0.318523498 SNS(ph)GRELTDEEILASVMIK ddPTM_HeLa_A485_30min_R1 2 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.175)NS(0.824)GRELT(0.001)DEEILASVMIK;S(0.2)NS(0.798)GRELT(0.001)DEEILASVMIK ; 240.18 6.51E-46 848900000 663000 666060 736230 1010730 1545620 1084890 1745030 2096950 1094550 1741120 TRUE FALSE FALSE 810482.0627 743949.923 1008592.114 1065943.621 1391732.646 1141693.163 1372190.085 1582669.725 1314216.145 1307090.827 0.620065604 0.569164673 0.771631239 0.815508455 1.064755882 0.873461231 1.049804693 1.210833778 1.00545128 1 20.31792796 -5.301570137 0.827099922 1.06781023 0.537037715 0.805303072 0.085949127 0.33739695 0.420271341 0.039512249 0.125607795 4.99E-06 5.301570137 -0.530772515 SNS(ph)GRELTDEEILASVMIK ddPTM_HeLa_A486_30min_R1 1 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.161)NS(0.837)GRELT(0.002)DEEILASVMIK 194.97 2.88E-19 711550000 187310 184460 162530 159450 340500 266930 381280 388400 179560 296540 TRUE FALSE FALSE 174180.5363 169842.7178 225465.9687 371207.6582 297791.315 233998.8905 285879.7112 299969.7987 195124.4054 222284.4538 0.783592974 0.764078256 1.014312809 1.6699668 1.339685749 1.052700207 1.286098539 1.349486181 0.877813999 1 17.76204753 -4.999563574 7.416523899 1.247692611 0.799448923 0.425097133 0.208916831 0.109116919 43.50683012 0.05612814 0.110192923 1.00E-05 4.999563574 -0.448243688 SNS(ph)GVRLDGYAR ddPTM_HeLa_A485_30min_R1 2 SNSGVRLDGYAR 12 1 A6NIT2;A6NMN0;P46020-3;P46020-2;P46020;P46019 A6NIT2 PHKA1;PHKA2 "Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform;Phosphorylase b kinase regulatory subunit alpha, liver isoform" 1 0 S(0.002)NS(0.998)GVRLDGYAR;S(0.139)NS(0.861)GVRLDGYAR ; 127.29 7.63E-05 0 147528 290100 170296 255772 316220 314740 440310 726690 212647 355832 TRUE FALSE FALSE 180345.0946 324024.6715 233295.577 269744.1767 284736.0265 331219.2997 346234.1715 548468.1381 255323.3024 267129.631 0.675122015 1.212986632 0.87334219 1.009787554 1.065909556 1.239919729 1.296127914 2.05319094 0.955802999 1 18.02718049 -6.344810346 1.762936297 1.40971796 0.959516033 0.228493199 0.308896725 0.457885978 2.815038236 0.129057406 0.110873476 4.52E-07 6.344810346 -0.450201927 SNS(ph)IKRNPNAPVVR ddPTM_HeLa_A485_30min_R1 1 SNSIKRNPNAPVVR 14 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;Q9HAU0-3;F5H1X3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(0.001)NS(0.999)IKRNPNAPVVR 197.14 4.63E-22 544120000 145970 237060 151250 146820 395130 336280 550020 814730 220080 232850 TRUE FALSE FALSE 178440.5229 264782.1049 207203.669 154840.4048 355789.4698 353887.1008 432503.7337 614916.1901 264248.0373 174804.7803 1.020798874 1.514730343 1.185343265 0.885790449 2.035353205 2.024470385 2.47420999 3.517730974 1.511675121 1 17.41538511 -5.882288605 4.757042675 2.261027593 1.183215554 0.329279776 0.6379238 0.223571541 8.339714362 0.198369387 0.227340528 1.31E-06 5.882288605 -1.077812039 SNS(ph)IKRNPNAPVVR ddPTM_HeLa_A486_30min_R1 2 SNSIKRNPNAPVVR 14 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;Q9HAU0-3;F5H1X3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 S(0.203)NS(0.797)IKRNPNAPVVR;S(0.064)NS(0.936)IKRNPNAPVVR ; 127.22 1.14E-05 462290000 496250 324180 217500 198201 505920 370710 578290 614700 245810 610550 TRUE FALSE FALSE 461465.4376 298490.7962 301721.8249 461421.9445 442462.7961 324975.5693 433595.7255 474746.2288 267117.0087 457664.306 1.008305502 0.652204667 0.659264489 1.008210469 0.966784585 0.710074098 0.947409968 1.037324132 0.583652702 1 18.80393025 -5.257789505 24.9694908 0.892581692 0.761152873 0.100720065 0.163233828 698.2063161 4776543.826 0.043948939 0.072492403 5.52E-06 5.257789505 -0.131428819 SNS(ph)LDKHQQSSTLGNSVVR ddPTM_HeLa_A485_30min_R1 1 SNSLDKHQQSSTLGNSVVR 19 1 X6RGR3;Q6ZSL5;A0A088AWN3;A0A0A0MSY4;Q9BZ29-3;Q9BZ29-5;Q9BZ29;Q9BZ29-4 X6RGR3 DOCK9 Dedicator of cytokinesis protein 9 1 0 S(0.427)NS(0.573)LDKHQQSSTLGNSVVR 208.89 4.45E-26 795560000 245580 258510 192730 267970 338650 303010 394300 457260 258160 440750 TRUE FALSE FALSE 300208.4238 288740.4958 264028.8472 282608.5226 304932.8169 318875.1351 310054.5839 345116.268 309970.344 330879.1364 0.90730539 0.872646426 0.797961606 0.85411406 0.921583694 0.963720888 0.937062963 1.043028194 0.936808369 1 18.3359448 -6.0543747 1.938068412 0.979709008 0.854270241 0.678054034 0.038292035 0.19973494 1.498853829 0.014743481 0.015595652 8.82E-07 6.0543747 -0.125438767 SNS(ph)LNNGQPK ddPTM_HeLa_A485_30min_R1 6 SNSLNNGQPK 10 0 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 S(0.001)NS(0.999)LNNGQPK;SNS(1)LNNGQPK;SNS(1)LNNGQPK;S(0.001)NS(0.999)LNNGQPK;SNS(1)LNNGQPK;SNS(1)LNNGQPK ;;;;; 196.38 5.38E-11 2091190000 2787370 2300350 2010300 3949720 3659920 2863690 4464310 4158500 2870130 5695470 TRUE FALSE FALSE 3407410.84 2569355.922 2753993.626 4165483.202 3295525.514 3013628.38 3510473.698 3138621.355 3446138.765 4275694.146 0.796925768 0.600921355 0.64410445 0.974223848 0.770758011 0.704827866 0.821030125 0.734061242 0.805983461 1 22.02772723 -14 0.175391655 1.956912866 0.706430245 0.370345409 0.096165883 153.1364414 1.460612357 51.04269078 0.337102482 1.00E-14 14 -1.250482621 SNS(ph)LNNGQPK ddPTM_HeLa_A486_30min_R1 4 SNSLNNGQPK 10 0 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 SNS(1)LNNGQPK;SNS(1)LNNGQPK;SNS(1)LNNGQPK;SNS(1)LNNGQPK ;;; 179.83 1.65E-09 2065310000 4899680 4647430 2513840 2088990 4342220 5053930 6317260 5960300 3882490 6200070 TRUE FALSE FALSE 4556237.734 4279150.721 3487266.171 4863274.292 3797578.278 4430427.501 4736614.731 4603269.802 4219027.359 4647532.116 0.980356374 0.920736127 0.750347945 1.046420804 0.817117167 0.953286043 1.019167724 0.990476168 0.907799506 1 22.1480334 -6.51099434 24.55113999 0.979661447 0.901642164 0.169102717 0.080505451 807.3443893 1667842.524 0.028480677 0.023787097 3.08E-07 6.51099434 -0.078019282 SNS(ph)LPHPAGGGK ddPTM_HeLa_A486_30min_R1 2 SNSLPHPAGGGK 12 0 G5E9A7;Q09019 G5E9A7 DMWD Dystrophia myotonica WD repeat-containing protein 1 0 S(0.246)NS(0.754)LPHPAGGGK;S(0.166)NS(0.834)LPHPAGGGK ; 86.497 0.0018748 724520000 1077220 1133290 643000 372410 1119910 1192440 1490910 1516730 946090 1369980 TRUE FALSE FALSE 1001712.441 1043483.973 891986.8201 866989.3006 979440.4451 1045328.877 1117868.549 1171403.689 1028097.843 1026928.091 0.975445554 1.016121754 0.868597157 0.844255122 0.953757574 1.017918281 1.088555819 1.140687161 1.001139079 1 19.96990373 -6.357992616 2.781691816 1.067904396 0.926430943 0.497979937 0.059956816 0.232651577 3.503826082 0.02467917 0.021516596 4.39E-07 6.357992616 -0.141473453 SNS(ph)LSTPRPTR ddPTM_HeLa_A485_30min_R1 4 SNSLSTPRPTR 11 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.117)NS(0.763)LS(0.117)T(0.002)PRPTR;S(0.023)NS(0.927)LS(0.049)T(0.001)PRPTR;S(0.006)NS(0.975)LS(0.018)TPRPTR;S(0.227)NS(0.767)LS(0.005)TPRPTR ;;; 95.631 0.00097426 999980000 396099 576781 615438 393089 629330 526399 560830 656460 627253 506947 TRUE FALSE FALSE 484209.856 644230.5206 843114.1267 414562.4567 566671.6955 553960.4377 441004.0889 495462.1557 753136.9236 380574.4426 1.272313119 1.692784508 2.215372428 1.089307138 1.488990411 1.455590223 1.158785351 1.301879738 1.978947715 1 18.53781916 -5.285540702 24.99751427 1.367739503 1.723419694 0.208958667 0.332145252 1237.885084 1283912.307 0.092863755 0.137819371 5.18E-06 5.285540702 0.35568019 SNS(ph)LSTPRPTR ddPTM_HeLa_A486_30min_R1 4 SNSLSTPRPTR 11 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.218)NS(0.741)LS(0.037)T(0.005)PRPTR;S(0.041)NS(0.855)LS(0.103)T(0.001)PRPTR;S(0.003)NS(0.993)LS(0.003)TPRPTR;S(0.162)NS(0.834)LS(0.004)TPRPTR ;;; 107.11 0.00032678 1125720000 392561 426575 402991 156804 512833 415467 462832 500776 390060 411738 TRUE FALSE FALSE 365044.5011 392771.6434 559039.9077 365047.6364 448508.7032 364210.9057 347026.5383 386760.2367 423870.7149 308636.1248 1.182766603 1.272604248 1.811323635 1.182776762 1.453195744 1.180065703 1.124387297 1.25312692 1.373367149 1 18.23554741 -6.270652702 24.22976781 1.198147201 1.387483645 0.206242676 0.189663981 767.0354425 2017190.505 0.066634086 0.05960699 5.36E-07 6.270652702 0.189336445 SNS(ph)LVSTFTMEK ddPTM_HeLa_A485_30min_R1 2 SNSLVSTFTMEK 12 0 Q9HB21 Q9HB21 PLEKHA1 Pleckstrin homology domain-containing family A member 1 1 0 SNS(0.998)LVS(0.002)TFTMEK;S(0.026)NS(0.974)LVSTFTMEK ; 243.92 6.29E-28 181618000 238794 183345 164069 297563 282018 218230 356470 284970 255134 469200 TRUE FALSE FALSE 291912.9015 204785.6029 224764.9506 313818.1132 253939.2977 229656.1854 280307.2724 215080.6607 306337.0536 352237.075 0.828739852 0.581385713 0.638107021 0.890928683 0.720932905 0.651993222 0.795791506 0.610613351 0.869689977 1 18.42618724 -7.985583329 5.653782765 0.999719222 0.715087885 0.490233058 0.094460204 0.110946211 12.31144011 0.089549664 0.023272903 1.03E-08 7.985583329 -0.284631337 SNS(ph)LVSTFTMEK ddPTM_HeLa_A486_30min_R1 1 SNSLVSTFTMEK 12 0 Q9HB21 Q9HB21 PLEKHA1 Pleckstrin homology domain-containing family A member 1 1 0 S(0.007)NS(0.993)LVS(0.001)TFTMEK 141 1.34E-06 89072000 74326 83074 42501 31751 83405 98887 110030 100880 74722 115380 TRUE FALSE FALSE 69116.13122 76490.91369 58958.52542 73917.93261 72943.56718 86687.32735 82499.33022 77911.82619 81198.96312 86488.097 0.799140386 0.88440972 0.681695256 0.854660181 0.84339429 1.002303558 0.953880743 0.900838715 0.938845528 1 16.40021397 -6.031957523 2.825458421 0.952260967 0.80202363 0.623423379 0.056983745 0.189000177 3.026214663 0.019663112 0.020949932 9.29E-07 6.031957523 -0.150237337 SNS(ph)PDKFK ddPTM_HeLa_A485_30min_R1 3 SNSPDKFK 8 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 S(0.208)NS(0.792)PDKFK;S(0.005)NS(0.995)PDKFK;S(0.001)NS(0.999)PDKFK ;; 116.84 0.00044543 2671120000 4706470 1985880 1578130 13447300 3960830 2775250 5721690 3282080 2643790 16078600 TRUE FALSE FALSE 5753408.014 2218111.391 2161945.958 14181891.95 3566475.858 2920557.799 4499204.19 2477144.734 3174374.403 12070500.92 0.476650311 0.183762994 0.179109879 1.174921574 0.29547041 0.241958293 0.372743784 0.205223027 0.262986136 1 23.52498221 -10.77956569 3.360257328 1.113107542 0.377402035 0.306473988 0.281161804 835413355.3 406862227.1 711629221.5 0.072177252 1.66E-11 10.77956569 -0.735705507 SNS(ph)PDKFK ddPTM_HeLa_A486_30min_R1 5 SNSPDKFK 8 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 S(0.009)NS(0.991)PDKFK;S(0.136)NS(0.864)PDKFK;SNS(1)PDKFK;SNS(1)PDKFK;S(0.003)NS(0.997)PDKFK ;;;; 150.86 0.00010812 8157610000 13110760 14499780 4180800 10449620 9259650 20565090 24415480 20654330 11619730 27115600 TRUE FALSE FALSE 12191763.43 13350764.63 5799717.726 24327243.45 8098218.354 18027978.29 18306468.66 15951789.94 12626937.55 20325677.27 0.599820772 0.656842301 0.285339458 1.196872465 0.398423051 0.886955847 0.900657254 0.784809762 0.62123084 1 24.27680009 -5.240736646 24.99967986 0.805737283 0.528285041 0.292963561 0.220767637 1137.162694 1373184.182 0.057083968 0.098741749 5.74E-06 5.240736646 -0.277452241 SNS(ph)PGTASSGSSR ddPTM_HeLa_A485_30min_R1 2 SNSPGTASSGSSR 13 0 H0YAP0;Q96GY0 H0YAP0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A 1 0 SNS(0.869)PGT(0.131)ASSGSSR;SNS(1)PGTASSGSSR ; 257.83 2.85E-41 536060000 542590 748110 501940 675420 666590 703060 737090 1091740 727220 1002540 TRUE FALSE FALSE 663287.2736 835594.9568 687628.4935 712316.4843 600221.9591 739871.1345 579604.7 823989.0532 873166.3835 752625.2284 0.881298219 1.110240429 0.913639973 0.946442476 0.797504437 0.983053858 0.770110645 1.094819868 1.160160928 1 19.52157212 -7.333125476 16.34322891 1.095652467 0.921453372 0.392521664 0.096598386 5.504582152 1253.463136 0.051998587 0.024977612 4.64E-08 7.333125476 -0.174199095 SNS(ph)PGTASSGSSR ddPTM_HeLa_A486_30min_R1 1 SNSPGTASSGSSR 13 0 H0YAP0;Q96GY0 H0YAP0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A 1 0 S(0.011)NS(0.981)PGT(0.007)AS(0.001)SGSSR 68.972 0.011608 206430000 108320 78757 108600 35407 107090 141080 100110 104150 127070 114900 TRUE FALSE FALSE 100727.3274 72516.00849 150652.8284 82429.28537 93657.77363 123674.984 75061.41914 80437.31858 138084.5299 86128.29213 1.169503364 0.841953401 1.74916772 0.957052361 1.087421697 1.43593912 0.871507112 0.933924458 1.603242402 1 16.3941996 -6.765797455 24.99889313 1.096662295 1.198123083 0.027739007 0.300232918 576.0411652 3304246.159 0.120907198 0.084689802 1.71E-07 6.765797455 0.101460788 SNS(ph)PLPVPPSK ddPTM_HeLa_A485_30min_R1 7 SNSPLPVPPSK 11 0 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.008)NS(0.992)PLPVPPSK;S(0.029)NS(0.971)PLPVPPSK;S(0.05)NS(0.95)PLPVPPSK;S(0.011)NS(0.989)PLPVPPSK;S(0.011)NS(0.989)PLPVPPSK;S(0.006)NS(0.994)PLPVPPSK;SNS(1)PLPVPPSK ;;;;;; 137.09 1.75E-05 24928510000 36039020 30917730 21531880 49208860 35603650 33460260 45789770 43677320 27783420 62499430 TRUE FALSE FALSE 44055775.67 34533289.58 29497418.43 51897015.42 32058825.59 35212187.47 36006411.57 32965388.79 33359297.55 46919472.32 0.938965711 0.736011892 0.628681802 1.106086937 0.683273362 0.750481319 0.767408707 0.702595045 0.710990467 1 25.48368345 SNS(ph)PLPVPPSK ddPTM_HeLa_A486_30min_R1 5 SNSPLPVPPSK 11 0 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.079)NS(0.921)PLPVPPSK;S(0.009)NS(0.99)PLPVPPSK;S(0.017)NS(0.983)PLPVPPSK;SNS(1)PLPVPPSK;S(0.238)NS(0.762)PLPVPPSK ;;;; 148.69 7.38E-07 24855800000 46652400 45693500 21618880 17581260 33528730 50980000 57680000 51482500 35635790 65006600 TRUE FALSE FALSE 43382307.67 42072580.65 29990289.31 40930061.79 29323244.04 44690605.93 43247853.92 39761058.61 38724728.97 48728524.24 0.890285687 0.863407651 0.615456548 0.839961038 0.601767538 0.917134402 0.887526446 0.815970917 0.794703504 1 25.53826319 SNS(ph)SSEAVLGQEELSAQAK ddPTM_HeLa_A486_30min_R1 2 SNSSSEAVLGQEELSAQAK 19 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 S(0.149)NS(0.823)S(0.027)S(0.001)EAVLGQEELSAQAK;S(0.028)NS(0.942)S(0.028)S(0.002)EAVLGQEELSAQAK ; 264.59 2.34E-58 192960000 171300 164830 98119 74104 169980 177470 203600 200610 133270 226320 TRUE FALSE FALSE 159292.7546 151768.2705 136113.3045 172517.857 148659.5234 155575.5558 152657.1265 154935.4823 144821.9509 169647.9989 0.93896041 0.894606901 0.802327793 1.016916546 0.87628221 0.917049165 0.899846314 0.913276215 0.853661416 1 17.37218489 -10.56154263 3.271806867 1.003604414 0.901737825 0.238489198 0.052834971 71596697.88 111726533.9 2349282.356 0.012626867 2.74E-11 10.56154263 -0.101866589 SNS(ph)TTQVSQPR ddPTM_HeLa_A485_30min_R1 6 SNSTTQVSQPR 11 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 SNS(0.835)T(0.164)TQVSQPR;SNS(0.97)T(0.03)TQVSQPR;SNS(0.479)T(0.479)T(0.042)QVSQPR;SNS(0.925)T(0.069)T(0.006)QVSQPR;SNS(0.979)T(0.02)T(0.001)QVSQPR;SNS(0.961)T(0.039)TQVSQPR ;;;;; 270.84 2.26E-29 4563130000 1980076 2400798 2216919 2146709 2903258 2111695 2759832 2898132 2225687 2730267 TRUE FALSE FALSE 2420537.075 2681550.442 3037049.592 2263978.277 2614199.44 2222260.085 2170171.347 2187360.583 2672361.966 2049661.684 1.180944687 1.308289296 1.481732139 1.104561936 1.275429726 1.084208239 1.058794905 1.067181282 1.303806373 1 20.96695437 -5.792766034 1.502071287 1.109190819 1.30876012 0.328299063 0.117688045 0.457688528 2.149063051 0.044092338 0.058776335 1.61E-06 5.792766034 0.1995693 SNS(ph)TTQVSQPR ddPTM_HeLa_A486_30min_R1 6 SNSTTQVSQPR 11 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 SNS(0.939)T(0.061)TQVSQPR;SNS(0.85)T(0.139)T(0.011)QVSQPR;SNS(0.914)T(0.079)T(0.007)QVSQPR;S(0.003)NS(0.906)T(0.062)T(0.029)QVSQPR;S(0.026)NS(0.942)T(0.026)T(0.006)QVSQPR;SNS(0.962)T(0.037)T(0.001)QVSQPR ;;;;; 251.14 9.18E-23 4085240000 2494349 2659530 2089997 816919 2826740 2675816 2745026 3036980 2380810 2738075 TRUE FALSE FALSE 2319508.016 2448779.157 2899299.81 1901828.717 2472183.911 2345701.028 2058191.461 2345525.951 2587180.528 2052443.198 1.130120443 1.193104471 1.412609037 0.926616979 1.204507834 1.142882312 1.002800693 1.14279701 1.260536969 1 20.96891086 -5.259786525 24.99825539 1.10555889 1.240060616 0.252930579 0.115920513 230.9328072 3492668.984 0.031676091 0.051384287 5.50E-06 5.259786525 0.134501726 SNS(ph)VEKPVSSILSR ddPTM_HeLa_A485_30min_R1 1 SNSVEKPVSSILSR 14 1 H0YJN0;Q9UI08-4;Q9UI08-3;Q9UI08-5;Q9UI08;Q9UI08-2 H0YJN0 EVL Ena/VASP-like protein 1 0 S(0.025)NS(0.975)VEKPVSSILSR 69.737 0.0022797 0 80179 87742 73155 119290 109740 79893 129630 134760 87463 154300 TRUE FALSE FALSE 98014.54194 98002.66365 100218.0787 125806.5106 98813.90028 84076.07394 101933.4915 101709.8987 105016.0218 115835.8497 0.846150326 0.846047782 0.865173252 1.086075779 0.853051111 0.725820842 0.879982249 0.878051993 0.906593443 1 16.82172229 -8.196344749 2.062509064 0.999888358 0.872965627 0.176627733 0.083084274 1.470562558 11.02088365 0.08530392 0.023600923 6.36E-09 8.196344749 -0.126922731 SNS(ph)VEKPVSSILSR ddPTM_HeLa_A486_30min_R1 2 SNSVEKPVSSILSR 14 1 H0YJN0;Q9UI08-4;Q9UI08-3;Q9UI08-5;Q9UI08;Q9UI08-2 H0YJN0 EVL Ena/VASP-like protein 1 0 S(0.014)NS(0.984)VEKPVSS(0.001)ILSR;S(0.017)NS(0.983)VEKPVSSILSR ; 81.807 0.0019219 383940000 235110 224570 103362 116187 197486 278770 347990 367500 199890 386000 TRUE FALSE FALSE 218630.0031 206774.2553 143386.5345 270489.2078 172715.4644 244378.1917 260919.2213 283828.2725 217216.6261 289343.0876 0.755608178 0.714633472 0.495558874 0.934839018 0.596922725 0.844596613 0.901764143 0.980940222 0.750723399 1 18.14242165 -6.457865079 5.395174229 0.903049788 0.702346609 0.398189125 0.122368654 0.227042 13.00724289 0.042555312 0.036787282 3.48E-07 6.457865079 -0.200703179 SNS(ph)VGIQDAFNDGSDSTFQKR ddPTM_HeLa_A485_30min_R1 2 SNSVGIQDAFNDGSDSTFQKR 21 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 S(0.001)NS(0.999)VGIQDAFNDGSDSTFQKR;S(0.164)NS(0.836)VGIQDAFNDGSDSTFQKR ; 149.16 8.63E-10 1059020000 338370 374410 284810 304590 496160 399150 512790 618810 276590 391350 TRUE FALSE FALSE 413639.2391 418193.9926 390173.0709 321228.9804 446760.5683 420048.8768 403228.2274 467045.8772 332099.076 293793.6473 1.407924382 1.423427622 1.328051422 1.093383003 1.520661091 1.429741183 1.372487905 1.589707203 1.130382086 1 18.16444368 -7.955616609 6.820252362 1.000439455 1.388160856 0.544991083 0.123478471 0.128157076 13.90505977 0.121873398 0.031573321 1.11E-08 7.955616609 0.387721401 SNS(ph)VGIQDAFNDGSDSTFQKR ddPTM_HeLa_A486_30min_R1 2 SNSVGIQDAFNDGSDSTFQKR 21 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 S(0.224)NS(0.776)VGIQDAFNDGSDSTFQKR;S(0.016)NS(0.984)VGIQDAFNDGSDSTFQKR ; 187.21 1.56E-19 693540000 412910 376292 284576 169289 488610 424350 597220 549480 330371 579200 TRUE FALSE FALSE 383967.1413 346473.2515 394771.4484 394113.3474 427323.9777 371998.0115 447789.2393 424375.3991 359007.8243 434164.55 0.884381604 0.798022896 0.909266886 0.907751099 0.984244286 0.856813417 1.031381395 0.977452901 0.826893454 1 18.72788241 -5.065904856 2.336406264 0.94299139 0.842070663 0.267176482 0.063631188 0.383551115 4.101716503 0.01783957 0.040625708 8.59E-06 5.065904856 -0.100920728 SNS(ph)WVNTGGPK ddPTM_HeLa_A485_30min_R1 6 SNSWVNTGGPK 11 0 Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0;A0A0U1RRC1 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.004)NS(0.996)WVNTGGPK;SNS(0.999)WVNT(0.001)GGPK;SNS(1)WVNTGGPK;SNS(1)WVNTGGPK;S(0.001)NS(0.999)WVNTGGPK;S(0.004)NS(0.996)WVNTGGPK ;;;;; 196.37 6.95E-12 1702370000 2282170 2024332 1430088 2704160 2637000 2211205 3624830 3566170 1745801 3774140 TRUE FALSE FALSE 2789830.843 2261060.018 1959137.062 2851881.414 2374451.021 2326980.275 2850355.458 2691561.216 2096167.247 2833316.356 0.98465208 0.798025965 0.691464283 1.006552413 0.838046558 0.821292077 1.006013837 0.949968474 0.739828167 1 21.43406027 -6.721483822 24.99871702 0.919783879 0.852463151 0.082767235 0.108833072 426.8752514 267079.364 0.041685948 0.032289335 1.90E-07 6.721483822 -0.067320728 SNS(ph)WVNTGGPK ddPTM_HeLa_A486_30min_R1 4 SNSWVNTGGPK 11 0 Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0;A0A0U1RRC1 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SNS(1)WVNTGGPK;SNS(1)WVNTGGPK;SNS(1)WVNTGGPK;SNS(0.999)WVNT(0.001)GGPK ;;; 238.88 9.49E-22 1911050000 2514910 2348370 1155560 1109890 2110450 2722230 3266910 3205430 1743700 3163490 TRUE FALSE FALSE 2338627.796 2162276.609 1603023.779 2583880.011 1845737.682 2386388.94 2449494.564 2475623.563 1894845.32 2371331.513 0.986208711 0.911840709 0.67600155 1.089632553 0.778354976 1.006349777 1.032961672 1.043980375 0.799063863 1 21.17726594 -6.319104487 24.99835204 0.982750614 0.889087757 0.114291699 0.121943194 601.1012732 260580.9443 0.041847888 0.036906375 4.80E-07 6.319104487 -0.093662858 SNSFS(ph)DER ddPTM_HeLa_A485_30min_R1 2 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SNS(0.356)FS(0.644)DER;S(0.009)NS(0.454)FS(0.537)DER ; 192.14 3.96E-06 47775000000 20744200 20555400 16203800 22412100 19336800 17424200 20965800 18204600 18314500 28913500 TRUE FALSE FALSE 25358675.72 22959175.22 22198259.92 23636416.27 17411560.3 18336504.17 16486285.56 13739893.31 21990052.16 21705896.56 1.168285109 1.057739087 1.022683392 1.088939874 0.802158079 0.844770642 0.759530274 0.6330028 1.013091171 1 24.37158368 -5.760531711 24.99995161 0.819748108 1.07809753 0.532312309 0.110020172 17.75754469 489085.5304 0.032395211 0.039429059 1.74E-06 5.760531711 0.258349422 SNSGLATYS(ph)PPMGPVSER ddPTM_HeLa_A485_30min_R1 5 SNSGLATYSPPMGPVSER 18 0 H0Y465;P21359-2;P21359-6;P21359;J3KSB5;P21359-4 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 SNSGLAT(0.006)YS(0.994)PPMGPVSER;SNSGLAT(0.052)YS(0.948)PPMGPVSER;SNSGLAT(0.018)Y(0.055)S(0.927)PPMGPVSER;SNSGLAT(0.002)YS(0.998)PPMGPVSER;SNSGLAT(0.004)Y(0.002)S(0.994)PPMGPVSER ;;;; 260.24 7.69E-58 937189000 745998 943376 927057 904989 1244803 858817 1195232 1225866 813426 1201842 TRUE FALSE FALSE 911942.6814 1053695.617 1270013.962 954426.2575 1120866.043 903783.3301 939860.9191 925220.4414 976673.137 902244.9077 1.010748494 1.167859866 1.40761555 1.057835017 1.242307973 1.001705105 1.041691575 1.025464853 1.082492269 1 19.78315957 -6.268188228 24.7182367 1.03257611 1.18291173 0.340732948 0.102063783 546.7254255 2002421.795 0.035752462 0.032225548 5.39E-07 6.268188228 0.150335621 SNSGLATYS(ph)PPMGPVSER ddPTM_HeLa_A486_30min_R1 3 SNSGLATYSPPMGPVSER 18 0 H0Y465;P21359-2;P21359-6;P21359;J3KSB5;P21359-4 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 SNSGLAT(0.009)YS(0.991)PPMGPVSER;SNSGLAT(0.075)YS(0.925)PPMGPVSER;SNSGLAT(0.004)YS(0.996)PPMGPVSER ;; 277.43 3.95E-69 1059700000 747957 752686 535434 265959 773219 708092 821590 779049 632852 783391 TRUE FALSE FALSE 695529.0768 693040.4201 742768.3842 619165.9928 676234.663 620734.8084 616019.4921 601676.5492 687708.1209 587224.7946 1.18443411 1.180196113 1.264879125 1.054393477 1.151577163 1.057065053 1.049035221 1.02461026 1.171115606 1 19.16355336 -5.271522232 24.99952839 1.075236581 1.206872417 0.574378279 0.054106632 482.4844122 1196276.18 0.014860139 0.022315034 5.35E-06 5.271522232 0.131635836 SNSGRELT(ph)DEEILASVMIK ddPTM_HeLa_A485_30min_R1 1 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.305)NS(0.305)GRELT(0.39)DEEILASVMIK 110.18 0.0010918 15466000 3841.9 3581.3 4224.5 5658.5 8681 7112.3 8320.9 10373 6781.2 11109 TRUE FALSE FALSE 4696.517401 4000.101882 5787.318346 5967.609527 7816.689159 7484.68903 6543.071739 7829.005486 8142.124639 8339.730746 0.563149764 0.479644008 0.693945467 0.715563812 0.937283157 0.897473702 0.784566305 0.938759982 0.976305457 1 13.02578509 -5.295150191 1.184859313 0.918484385 0.507339403 0.842126453 0.06836083 0.198300509 0.534689441 0.024915896 0.06361233 5.07E-06 5.295150191 -0.411144982 SNSGRELT(ph)DEEILASVMIK ddPTM_HeLa_A486_30min_R1 1 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.048)NS(0.309)GRELT(0.643)DEEILASVMIK 216.65 1.68E-34 129280000 65809 77348 65854 57990 126600 108870 144020 141030 76231 122830 TRUE FALSE FALSE 61196.12894 71218.66278 91354.43243 135003.6507 110720.6475 95438.72631 107984.6727 108920.5477 82838.76446 92072.56851 0.664651046 0.773505768 0.992200325 1.466274405 1.202536752 1.036559834 1.172821335 1.182985871 0.899711671 1 16.49048377 -4.825899369 3.272785477 1.149219378 0.701531345 0.564083951 0.144905676 0.164307143 3.4995104 0.03964215 0.102493437 1.49E-05 4.825899369 -0.447688032 SNSLS(ph)EQLAINTSPDAVK ddPTM_HeLa_A485_30min_R1 1 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 S(0.034)NS(0.2)LS(0.766)EQLAINTSPDAVK 141.97 6.05E-08 86274000 105420 78998 67935 135790 137040 96085 151250 157490 92994 201800 TRUE FALSE FALSE 128870.3153 88236.12891 93066.98351 143207.8639 123395.8164 101115.862 118934.2019 118865.3306 111657.0428 151494.9739 0.850657365 0.582436015 0.614323902 0.945297789 0.81452086 0.667453576 0.785070282 0.784615671 0.737034635 1 17.2089104 -13.99999996 0.251215698 2.514014875 0.729389808 0.332405431 0.104287914 225.810083 2.239221358 175.6810265 0.156505718 1.00E-14 13.99999996 -1.784625068 SNSLSEQLAINTS(ph)PDAVK ddPTM_HeLa_A485_30min_R1 1 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 SNSLSEQLAINT(0.17)S(0.83)PDAVK 219.66 2.35E-34 288030000 351650 314710 229110 476720 515520 366260 551500 542590 327300 683890 TRUE FALSE FALSE 429873.3293 351512.5969 313867.3231 502762.0065 464193.0187 385436.8073 433667.5197 409518.9518 392986.1078 513408.8091 0.837292469 0.684664133 0.611339964 0.979262525 0.904139178 0.750740541 0.844682662 0.797646913 0.765444809 1 18.96974852 -14 0.206501494 1.920342921 0.768125606 0.264458889 0.099949991 216.7641284 2.156116034 82.97165759 0.238692816 1.00E-14 14 -1.152217314 SNSLSEQLAINTS(ph)PDAVK ddPTM_HeLa_A486_30min_R1 2 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 SNSLSEQLAINT(0.003)S(0.997)PDAVK;SNSLSEQLAINT(0.203)S(0.797)PDAVK ; 351.41 2.75E-115 639980000 842260 835390 511930 424550 920770 1009660 1160980 1096090 641930 1162560 TRUE FALSE FALSE 783221.9234 769190.654 710163.006 988373.8556 805278.4408 885098.4147 870490.5244 846534.2345 697573.0093 871447.409 0.898759828 0.882658719 0.814923538 1.134174989 0.924070038 1.01566475 0.998901959 0.971411729 0.800476313 1 19.73305408 -5.194876856 24.99986303 0.976842187 0.867168487 0.289075256 0.080728359 250.8142366 94201.06639 0.021561477 0.037345569 6.38E-06 5.194876856 -0.109673699 SNSQSDS(ph)HDEEVS(ph)PTPPNPVVK ddPTM_HeLa_A485_30min_R1 2 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 2 0 S(0.114)NS(0.114)QS(0.114)DS(0.657)HDEEVS(0.999)PT(0.001)PPNPVVK;S(0.002)NS(0.009)QS(0.053)DS(0.936)HDEEVS(0.993)PT(0.007)PPNPVVK ; 129.51 1.58E-08 455490000 472790 474400 407400 557000 666710 524910 770900 679960 513900 855450 TRUE FALSE FALSE 577960.5044 529876.9533 558114.2133 587427.4996 600330.0114 552393.4759 606190.9173 513198.7439 617035.0162 642202.0584 0.899966758 0.825093826 0.869063258 0.914708217 0.934799264 0.860155256 0.943925528 0.79912348 0.960811334 1 19.29266776 -14 0.220807681 1.577349101 0.873193398 0.337619654 0.048410163 177.200085 1.773628295 45.45913887 0.089628978 1.00E-14 14 -0.704155703 SNSQSDS(ph)HDEEVS(ph)PTPPNPVVK ddPTM_HeLa_A486_30min_R1 2 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 2 0 SNS(0.003)QS(0.041)DS(0.956)HDEEVS(1)PTPPNPVVK;SNS(0.001)QS(0.007)DS(0.992)HDEEVS(1)PTPPNPVVK ; 167.06 6.54E-14 1279760000 1241350 1330860 900560 247690 1443610 1418600 1767650 1646220 1186770 1262410 TRUE FALSE FALSE 1154337.775 1225397.807 1249280.95 576634.8376 1262538.973 1243587.555 1325365.274 1271411.643 1289640.179 946294.3191 1.219850687 1.294943636 1.320182236 0.609360984 1.3341927 1.31416572 1.400584625 1.343568927 1.362832 1 19.85192944 SNSQSDS(ph)HDEEVSPTPPNPVVK ddPTM_HeLa_A486_30min_R1 1 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 1 0 S(0.056)NS(0.056)QS(0.093)DS(0.794)HDEEVSPTPPNPVVK 158.14 1.69E-10 269860000 268180 324910 200990 37653 318870 330270 338630 339580 298990 245090 TRUE FALSE FALSE 249381.9669 299162.9483 278818.7107 87658.08688 278874.3513 289524.6453 253901.1923 262265.047 324906.6939 183717.8687 1.357418136 1.628382423 1.51764612 0.477134247 1.517948979 1.5759199 1.382016861 1.427542399 1.768508944 1 17.48713243 SNSQSDSHDEEVS(ph)PTPPNPVVK ddPTM_HeLa_A486_30min_R1 1 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 1 0 SNSQSDSHDEEVS(1)PTPPNPVVK 175.76 1.18E-14 1089400000 329030 357110 243780 43314 379550 348580 413720 395920 361170 277420 TRUE FALSE FALSE 305966.6961 328811.303 338178.1447 100837.181 331943.2998 305575.7437 310202.8801 305777.6589 392476.5064 207952.2263 1.471331669 1.581186741 1.626229979 0.484905513 1.596247877 1.469451658 1.491702617 1.470422627 1.887339767 1 17.6658926 SNT(ph)LDIMDGR ddPTM_HeLa_A485_30min_R1 5 SNTLDIMDGR 10 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 S(0.057)NT(0.943)LDIMDGR;S(0.011)NT(0.989)LDIMDGR;SNT(1)LDIMDGR;S(0.001)NT(0.999)LDIMDGR;S(0.178)NT(0.822)LDIMDGR ;;;; 217.2 3.58E-16 1916265000 2349920 2183720 1779430 3177560 2947400 2266990 3575800 3417580 1983480 4665800 TRUE FALSE FALSE 2872651.597 2439087.058 2437715.205 3351142.057 2653946.507 2385686.091 2811801.118 2579413.146 2381546.242 3502701.928 0.82012448 0.696344453 0.695952797 0.956730583 0.757685513 0.681098803 0.80275204 0.736406694 0.679916902 1 21.74003679 -10.21064153 4.632722835 1.000052825 0.759059049 0.444801878 0.080922132 4.50E-05 7.66E-06 0.079376827 0.019247473 6.16E-11 10.21064153 -0.240993776 SNT(ph)LDIMDGR ddPTM_HeLa_A486_30min_R1 3 SNTLDIMDGR 10 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 S(0.003)NT(0.997)LDIMDGR;SNT(1)LDIMDGR;S(0.158)NT(0.842)LDIMDGR ;; 192.4 2.12E-09 751549000 1113540 1091600 735290 462981 1101940 1124340 1358200 1319790 893840 1457860 TRUE FALSE FALSE 1035486.596 1005097.64 1020013.98 1077843.166 963724.41 985630.3623 1018363.994 1019302.628 971318.7709 1092802.367 0.947551568 0.919743287 0.933392909 0.986311156 0.881883531 0.901929198 0.931883042 0.932741966 0.888832968 1 20.05960108 -10.06423293 4.476006451 1.000003644 0.925314528 0.382918724 0.02858971 6433733.892 14466153.07 170.0291031 0.00699538 8.63E-11 10.06423293 -0.074689116 SNT(ph)LNEKPALPVIR ddPTM_HeLa_A485_30min_R1 2 SNTLNEKPALPVIR 14 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9;A0A087WZS7 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.051)NT(0.949)LNEKPALPVIR;S(0.038)NT(0.962)LNEKPALPVIR ; 127.97 2.87E-05 843520000 187054 128347 83306 218663 200936 160989 320461 342327 144606 305379 TRUE FALSE FALSE 228663.517 143356.0652 114124.3561 230608.006 180930.1063 169418.1351 251991.8894 258370.7665 173627.0978 229253.6354 0.997425915 0.625316431 0.497808272 1.005907739 0.789213685 0.738998685 1.099183832 1.127008372 0.7573581 1 17.80658509 -6.751805395 24.87205448 1.006471611 0.767375344 0.285244098 0.170051288 235.4754438 607927.8641 0.066624809 0.050929077 1.77E-07 6.751805395 -0.239096267 SNT(ph)LNEKPALPVIR ddPTM_HeLa_A486_30min_R1 2 SNTLNEKPALPVIR 14 1 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9;A0A087WZS7 Q9UMZ2-4 SYNRG Synergin gamma 1 0 SNT(1)LNEKPALPVIR;S(0.066)NT(0.934)LNEKPALPVIR ; 181.41 2.88E-17 748040000 195120 223230 117810 127690 180390 250760 331050 313440 170300 322660 TRUE FALSE FALSE 181443.0956 205540.4418 163429.1871 297268.7731 157763.8041 219823.7807 248217.7885 242076.5543 185061.7411 241863.8358 0.750186959 0.849818829 0.675707414 1.229074913 0.652283561 0.908874119 1.026270784 1.000879497 0.765148458 1 17.88383554 SNT(ph)PESIAETPPAR ddPTM_HeLa_A485_30min_R1 1 SNTPESIAETPPAR 14 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SNT(1)PESIAETPPAR 208.39 3.31E-22 0 111290 132040 108020 179420 179900 136980 188410 194420 123240 233030 TRUE FALSE FALSE 136046.0766 147480.9294 147981.0931 189221.2603 161988.5243 144152.061 148154.6643 146738.1902 147973.1376 174939.9096 0.777673184 0.843037645 0.845896705 1.08163575 0.925966663 0.824009006 0.846888881 0.838791963 0.845851229 1 17.41649993 SNT(ph)PILVDGK ddPTM_HeLa_A485_30min_R1 3 SNTPILVDGK 10 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41 P06744-2 GPI Glucose-6-phosphate isomerase 1 0 S(0.003)NT(0.997)PILVDGK;S(0.009)NT(0.991)PILVDGK;S(0.011)NT(0.989)PILVDGK ;; 134.06 0.00026967 304879000 1150220 704490 571910 2264220 1088650 821980 1329680 872760 798100 2808170 TRUE FALSE FALSE 1406082.471 786873.9773 783483.3082 2387908.605 980260.1835 865017.6018 1045583.006 658714.2416 958271.3494 2108144.9 0.666976198 0.373254219 0.371645852 1.132706108 0.4649871 0.410321701 0.495973026 0.312461559 0.454556681 1 21.0075426 -10.50365379 6.190365499 1.000407883 0.517941085 0.291338685 0.22440859 0.00130126 0.000104336 0.223818384 0.054239883 3.14E-11 10.50365379 -0.482466798 SNT(ph)PILVDGK ddPTM_HeLa_A486_30min_R1 4 SNTPILVDGK 10 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41 P06744-2 GPI Glucose-6-phosphate isomerase 1 0 S(0.001)NT(0.999)PILVDGK;S(0.02)NT(0.98)PILVDGK;S(0.009)NT(0.991)PILVDGK;S(0.006)NT(0.994)PILVDGK ;;; 150.26 1.82E-05 551381000 1874740 2148770 875970 1022940 1611540 2630280 2964650 2581020 1741660 3333470 TRUE FALSE FALSE 1743330.407 1978493.64 1215169.043 2381456.017 1409405.626 2305782.796 2222863.213 1993378.089 1892628.491 2498747.415 0.697681725 0.791794172 0.486311276 0.953059922 0.564044856 0.922775461 0.889591001 0.797750936 0.757430895 1 21.25277364 -6.281580639 24.91305126 0.861874178 0.706102275 0.300954869 0.132463815 1107.224711 1369539.858 0.044440217 0.039242252 5.23E-07 6.281580639 -0.155771903 SNT(ph)PILVDGKDVMPEVNK ddPTM_HeLa_A485_30min_R1 4 SNTPILVDGKDVMPEVNK 18 1 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41 P06744-2 GPI Glucose-6-phosphate isomerase 1 0 S(0.333)NT(0.667)PILVDGKDVMPEVNK;S(0.02)NT(0.98)PILVDGKDVMPEVNK;S(0.019)NT(0.981)PILVDGKDVMPEVNK;S(0.003)NT(0.997)PILVDGKDVMPEVNK ;;; 167.72 4.20E-12 698230000 1422420 795889 555634 2797020 1475550 1264130 2543940 1834120 1004520 3834720 TRUE FALSE FALSE 1738832.422 888961.2952 761186.1385 2949814.12 1328639.061 1330317.892 2000406.437 1384299.194 1206117.95 2878794.877 0.604014005 0.308796331 0.264411384 1.024669782 0.461526131 0.462109302 0.694876336 0.480860656 0.418966269 1 21.45703357 -11.15588186 2.209004892 2.049442715 0.52523354 0.326081031 0.205085323 9707892.747 2282616.019 50957685.12 0.054985181 6.98E-12 11.15588186 -1.524209175 SNT(ph)PILVDGKDVMPEVNK ddPTM_HeLa_A486_30min_R1 3 SNTPILVDGKDVMPEVNK 18 1 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8;K7ERC6;K7EPY4;K7EP41 P06744-2 GPI Glucose-6-phosphate isomerase 1 0 S(0.044)NT(0.956)PILVDGKDVMPEVNK;S(0.005)NT(0.995)PILVDGKDVMPEVNK;S(0.014)NT(0.986)PILVDGKDVMPEVNK ;; 171.72 2.63E-12 797960000 1862420 1495410 578213 1321100 1447480 2394670 3453050 2971270 1396870 3698670 TRUE FALSE FALSE 1731873.976 1376908.265 802112.5587 3075587.565 1265923.561 2099239.963 2589060.367 2294776.683 1517951.816 2772498.958 0.624661723 0.49663076 0.289310319 1.109319647 0.456600194 0.757165285 0.933836372 0.827692532 0.547503115 1 21.40275549 -5.244820284 24.99967809 0.786318595 0.472843933 0.369083861 0.199338617 935.8882747 1407830.904 0.052716376 0.090978292 5.69E-06 5.244820284 -0.313474662 SNT(ph)PMGDKDDDDDDDADEK ddPTM_HeLa_A485_30min_R1 1 SNTPMGDKDDDDDDDADEK 19 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 S(0.257)NT(0.743)PMGDKDDDDDDDADEK 83.449 0.0018025 464110000 348030 225780 129100 923990 335160 193350 465050 345030 160870 935310 TRUE FALSE FALSE 425448.0728 252183.007 176859.4623 974465.234 301790.2936 203473.507 365688.2684 260410.8515 193155.1334 702154.4301 0.605918092 0.359156043 0.251881146 1.387821813 0.429806152 0.289784552 0.520808889 0.370874042 0.275089247 1 19.42142884 -10.38675377 3.264490936 1.004941 0.502457428 0.18453133 0.315872313 166520829.5 231569376.5 7818840.872 0.079638638 4.10E-11 10.38675377 -0.502483572 SNT(ph)PMGDKDDDDDDDADEKMQSSGIPNGGHIR ddPTM_HeLa_A485_30min_R1 1 SNTPMGDKDDDDDDDADEKMQSSGIPNGGHIR 32 2 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 S(0.04)NT(0.96)PMGDKDDDDDDDADEKMQSSGIPNGGHIR 233.11 3.88E-40 534780000 64170 48495 27864 155120 66813 52897 165990 122050 34693 259110 TRUE FALSE FALSE 78444.39512 54166.0684 38172.05312 163593.8128 60160.86313 55666.60513 130524.8805 92117.04613 41655.56688 194518.6456 0.403274426 0.278462089 0.19623853 0.841018671 0.309280701 0.286176191 0.671014751 0.473564094 0.21414691 1 17.56954893 -11.18133959 2.322864536 2.546029476 0.413978943 0.449913064 0.196239436 24383457.97 5010968.356 198390783.4 0.050098089 6.59E-12 11.18133959 -2.132050533 SNT(ph)PMGDKDDDDDDDADEKMQSSGIPNGGHIR ddPTM_HeLa_A486_30min_R1 1 SNTPMGDKDDDDDDDADEKMQSSGIPNGGHIR 32 2 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 S(0.163)NT(0.837)PMGDKDDDDDDDADEKMQSSGIPNGGHIR 185.97 3.78E-21 704580000 140170 119520 35313 132600 95862 195990 355180 286150 77038 461970 TRUE FALSE FALSE 130344.8068 110048.7999 48987.13931 308699.5012 83838.09408 171810.7465 266310.2073 220999.8916 83715.71587 346289.7051 0.376403933 0.317794027 0.141462881 0.891448682 0.242103917 0.496147428 0.769038765 0.638193652 0.241750519 1 18.40161997 -14 0.105575933 2.595773306 0.153797175 0.335353429 0.231114791 207.4442401 1.468914798 73.24836412 3.298018645 1.00E-14 14 -2.441976131 SNT(ph)PTPR ddPTM_HeLa_A485_30min_R1 6 SNTPTPR 7 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8;Q04727-4;Q04727;Q04727-3;H7C4W5;H0Y5S0;H7C4P7;Q5JSY7;H7C4E4;Q04727-2 H0YKH0;Q04727-4 TLE3;TLE4 Transducin-like enhancer protein 3;Transducin-like enhancer protein 4 1 0 S(0.001)NT(0.988)PT(0.01)PR;S(0.001)NT(0.998)PT(0.001)PR;S(0.056)NT(0.944)PT(0.001)PR;S(0.03)NT(0.967)PT(0.002)PR;S(0.032)NT(0.967)PT(0.001)PR;S(0.009)NT(0.958)PT(0.033)PR ;;;;; 120.76 0.0096774 12541948000 6840593 7600908 3876870 11096462 4918916 6277732 8457488 10145884 5962723 12827092 TRUE FALSE FALSE 8362259.313 8489768.071 5311085.543 11702633.62 4429171.452 6606424.34 6650476.597 7657590.041 7159386.813 9629534.03 0.868397088 0.881638514 0.551541282 1.215285556 0.459956986 0.686058569 0.690633272 0.795219168 0.743482165 1 23.19903456 -4.622705483 18.73769062 0.756889304 0.875475051 0.040715106 0.202665325 6.523293443 1196.896173 0.049165075 0.13007967 2.38E-05 4.622705483 0.118585747 SNT(ph)PTPR ddPTM_HeLa_A486_30min_R1 3 SNTPTPR 7 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8;Q04727-4;Q04727;Q04727-3;H7C4W5;H0Y5S0;H7C4P7;Q5JSY7;H7C4E4;Q04727-2 H0YKH0;Q04727-4 TLE3;TLE4 Transducin-like enhancer protein 3;Transducin-like enhancer protein 4 1 0 SNT(0.976)PT(0.024)PR;S(0.009)NT(0.982)PT(0.009)PR;S(0.373)NT(0.626)PT(0.001)PR ;; 125.18 0.008514 9371400000 3255962 1701439 1832932 1295788 1748194 4148813 2845702 2207872 2998077 4249220 TRUE FALSE FALSE 3027735.878 1566610.777 2542692.358 3016659.949 1528919.207 3636974.634 2133677.261 1705187.743 3257952.728 3185187.654 0.950567504 0.491842537 0.798286517 0.94709018 0.480009146 1.141839988 0.6698749 0.535349225 1.022844831 1 21.60294694 -7.799060112 24.99806147 1.01142353 0.752450729 0.201483389 0.206691455 299.662728 199111.4677 0.189927567 0.049043631 1.59E-08 7.799060112 -0.2589728 SNTQGPAYSHLT(ph)EFAPPPTPMVDHLVASNPFEDDFGAPK ddPTM_HeLa_A485_30min_R1 1 SNTQGPAYSHLTEFAPPPTPMVDHLVASNPFEDDFGAPK 39 0 Q5T171;Q9BRQ0 Q5T171;Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 S(0.096)NT(0.096)QGPAY(0.016)S(0.271)HLT(0.521)EFAPPPTPMVDHLVASNPFEDDFGAPK 107.15 5.35E-05 39992000 19389 18771 17968 21900 27951 21801 23733 22825 20021 29320 TRUE FALSE FALSE 23702.01616 20966.10516 24615.11091 23096.34155 25168.1003 22942.46665 18662.25067 17227.13296 24039.03106 22011.06359 1.076822847 0.952525764 1.118306292 1.04930602 1.143429539 1.042315223 0.847857742 0.782657907 1.092134006 1 14.42594124 -6.655146435 6.525843839 0.913226976 1.065989261 0.334421374 0.091106401 0.225324987 12.2718297 0.034694973 0.026688433 2.21E-07 6.655146435 0.152762285 SNVDLRR ddPTM_HeLa_A486_30min_R1 2 SNVDLRR 7 1 P22460-2;P22460 P22460-2 KCNA5 Potassium voltage-gated channel subfamily A member 5 0 0 ; ; 78.616 0.036046 135735000 55581 73148 98557 42817 99460 100662 97356 86645 92537 86248 FALSE FALSE TRUE 51685.05892 67351.48608 136720.9098 99680.13985 86984.79937 88243.3459 72996.49907 66917.82495 100558.1817 64650.93942 0.799447918 1.04177119 2.114755193 1.54182044 1.345452984 1.364919778 1.129086441 1.035063458 1.555401709 1 15.98038371 -6.676971593 5.528009621 1.183392935 1.396712641 0.061975754 0.349194007 0.645267049 32.15635783 0.145437374 0.110858325 2.10E-07 6.676971593 0.213319706 SNVIDSMLFVFGYR ddPTM_HeLa_A485_30min_R1 1 SNVIDSMLFVFGYR 14 0 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;C9J9E4 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 0 0 130.01 0.0001854 2108500 1365.6 2174.1 2174.6 1408.1 3138.5 2174.6 3499 3312.4 1783.9 2881.1 FALSE FALSE TRUE 1669.373009 2428.342083 2979.075033 1485.020938 2826.01992 2288.458693 2751.410066 2500.028706 2141.912367 2162.894793 0.771823491 1.122727786 1.377355497 0.686589538 1.306591485 1.058053633 1.272096116 1.155871619 0.990298915 1 11.07874778 SNVIDSMLFVFGYR ddPTM_HeLa_A486_30min_R1 1 SNVIDSMLFVFGYR 14 0 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;E9PD53;C9J9E4 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 0 0 93.011 0.01514 3904200 1279.8 1835.8 990.7 970.71 1887.2 981.46 1929 1874.3 1048.9 2094.2 FALSE FALSE TRUE 1190.092629 1690.324522 1374.325572 2259.861937 1650.489779 860.377444 1446.343797 1447.562806 1139.819497 1569.798689 0.758117991 1.076777891 0.875478863 1.439587097 1.051402189 0.548081388 0.921356227 0.922132765 0.726092782 1 10.61636384 -6.06854034 24.99713756 0.821997576 1.055822886 0.223143718 0.201166131 257.7338691 93996.29431 0.066451121 0.066451154 8.54E-07 6.06854034 0.23382531 SNVSDAVAQSTR ddPTM_HeLa_A485_30min_R1 2 SNVSDAVAQSTR 12 0 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 251.81 9.78E-39 125473000 62509 94765 84484 64087 108538 82113 102801 111970 77531 94156 FALSE FALSE TRUE 76413.9114 105846.9424 115738.1473 67587.91053 97731.57562 86412.30971 80836.72654 84509.18194 93090.76054 70684.64201 1.081053949 1.497453186 1.637387472 0.956189472 1.382642295 1.222504737 1.14362504 1.195580533 1.316987084 1 16.10910917 -5.259493187 24.99748513 1.191539175 1.414513683 0.258588539 0.177581649 246.3060431 3163603.613 0.047946904 0.077997203 5.50E-06 5.259493187 0.222974508 SNVSDAVAQSTR ddPTM_HeLa_A486_30min_R1 2 SNVSDAVAQSTR 12 0 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 157.03 1.81E-05 14160000 16123.1 22540.8 19012.6 5117.2 25780 19279 21204.4 21979.9 19995.5 18622.1 FALSE FALSE TRUE 14992.95395 20754.58492 26374.7879 11913.10021 22546.43201 16900.55299 15898.83484 16975.55659 21728.72604 13959.00495 1.074070394 1.486824096 1.889446131 0.853434772 1.615189055 1.210727631 1.138966201 1.216100764 1.556609953 1 13.76890848 -5.2630635 24.99999662 1.248086215 1.483784569 0.145101239 0.281781864 305.4021236 4701057.292 0.076668614 0.120719338 5.46E-06 5.2630635 0.235698354 SNVSS(ph)PATPTASSSSSTTPTR ddPTM_HeLa_A485_30min_R1 3 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVS(0.119)S(0.873)PAT(0.004)PT(0.004)ASSSSSTTPTR;SNVS(0.003)S(0.958)PAT(0.038)PT(0.001)ASSSSSTTPTR;SNVS(0.053)S(0.947)PATPTASSSSSTTPTR ;; 186.74 2.78E-19 1082800000 434425 549230 573010 523060 733450 510980 673340 720220 520820 745070 TRUE FALSE FALSE 531061.3425 613457.6708 784990.2439 551633.4433 660425.1427 537734.1227 529475.4083 543584.9157 625343.7968 559337.761 0.949446613 1.096757118 1.403427944 0.986226001 1.180726904 0.961376399 0.946611234 0.971836614 1.118007473 1 19.0933602 -6.26606028 24.90021505 0.994496435 1.129786934 0.200957896 0.122835782 605.6304379 3263491.488 0.04313053 0.039317953 5.42E-07 6.26606028 0.135290499 SNVSS(ph)PATPTASSSSSTTPTR ddPTM_HeLa_A486_30min_R1 2 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVS(0.001)S(0.512)PAT(0.363)PT(0.084)AS(0.034)S(0.005)S(0.002)SSTTPTR;SNVSS(1)PATPTASSSSSTTPTR ; 211.33 8.81E-33 291520000 185019 216734 155919 73243 232180 196437 222002 228371 190631 214007 TRUE FALSE FALSE 172050.1235 199559.2085 216295.0125 170513.4055 203057.8194 172202.6002 166454.7515 176375.9086 207155.0486 160418.2542 1.072509636 1.243993144 1.348319201 1.06293019 1.265802451 1.073460131 1.03762974 1.099475302 1.291343367 1 17.29147879 -6.274228717 24.68388813 1.102676914 1.201994802 0.173724559 0.10704395 1241.278638 2395705.964 0.037500787 0.033302146 5.32E-07 6.274228717 0.099317888 SNVSS(ph)PATPTASSSSSTTPTRK ddPTM_HeLa_A485_30min_R1 2 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVS(0.011)S(0.839)PAT(0.143)PT(0.006)ASSSSSTTPTRK;SNVS(0.036)S(0.928)PAT(0.036)PTASSSSSTTPTRK ; 127.94 1.12E-09 411910000 410620 509390 377388 433730 619940 542750 713420 817350 443910 633810 TRUE FALSE FALSE 501961.0024 568958.7294 516999.5256 457423.5716 558216.5969 571167.5507 560991.9889 616893.6309 532998.6652 475812.8314 1.054954741 1.195761635 1.086560705 0.961351904 1.173185253 1.200403842 1.179018202 1.296504823 1.120185565 1 18.86003465 -5.954594671 24.99958122 1.179858636 1.082046529 0.16929719 0.088426133 196.8647389 108390.205 0.026942706 0.03055015 1.11E-06 5.954594671 -0.097812106 SNVSSPAT(ph)PTASSSSS(ph)TTPTRK ddPTM_HeLa_A485_30min_R1 2 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 SNVS(0.001)S(0.002)PAT(0.979)PT(0.021)AS(0.09)S(0.081)S(0.074)S(0.067)S(0.24)T(0.213)T(0.188)PT(0.045)RK;SNVSS(0.006)PAT(0.938)PT(0.056)AS(0.019)S(0.05)S(0.174)S(0.137)S(0.334)T(0.182)T(0.101)PT(0.003)RK ; 156.03 3.87E-10 1021820000 466420 484420 379300 552910 639490 508270 760470 793980 420420 735600 TRUE FALSE FALSE 570173.5199 541068.7051 519618.854 583114.0733 575820.1302 534882.2313 597989.372 599255.1601 504794.4377 552228.4577 1.032495721 0.979791421 0.94094907 1.055929055 1.042720856 0.968588677 1.082865911 1.085158057 0.914104354 1 19.07490571 -5.272709507 24.97731695 1.026143092 0.983950003 0.086202399 0.053510731 1590.218239 3524300.895 0.014974461 0.022414912 5.34E-06 5.272709507 -0.042193088 SNVSSPAT(ph)PTASSSSS(ph)TTPTRK ddPTM_HeLa_A486_30min_R1 2 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 SNVSSPAT(0.996)PT(0.004)AS(0.001)S(0.008)S(0.007)S(0.042)S(0.352)T(0.299)T(0.255)PT(0.036)RK;SNVS(0.077)S(0.348)PAT(0.566)PT(0.009)AS(0.068)S(0.058)S(0.028)S(0.087)S(0.294)T(0.25)T(0.213)PT(0.002)RK ; 147.28 1.25E-09 1149540000 1071780 995710 596620 422810 984320 990910 1300840 1264270 803800 1362000 TRUE FALSE FALSE 996653.7567 916806.3133 827647.242 984323.0476 860857.4072 868661.599 975356.0731 976423.3198 873474.0312 1020946.335 0.976205823 0.897996576 0.810666745 0.964128098 0.843195551 0.850839627 0.955345095 0.956390445 0.855553325 1 19.9614756 -10.03698634 4.374902455 1.000005535 0.900280176 0.216725072 0.056356955 75533356.72 10263.0435 4645.155202 0.013590422 9.18E-11 10.03698634 -0.099725359 SNVSSPAT(ph)PTASSSSSTTPTRK ddPTM_HeLa_A485_30min_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVS(0.006)S(0.26)PAT(0.598)PT(0.131)AS(0.003)S(0.001)SSSTTPTRK 151.02 9.94E-10 441570000 193620 233210 194120 214680 300840 258850 357990 393130 202660 314820 TRUE FALSE FALSE 236690.101 260481.8808 265933.066 226407.4248 270887.3133 272402.9857 281502.512 296714.2511 243332.0031 236341.1678 1.001476396 1.102143495 1.125208394 0.95796863 1.146170664 1.152583734 1.19108539 1.255448866 1.029579423 1 17.85051143 -5.903094128 24.99962114 1.146219959 1.05573964 0.172174106 0.082736105 21.88009264 5625.968634 0.024984866 0.028330174 1.25E-06 5.903094128 -0.090480319 SNVSSPAT(ph)PTASSSSSTTPTRK ddPTM_HeLa_A486_30min_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVS(0.007)S(0.473)PAT(0.49)PT(0.025)AS(0.002)S(0.001)SSSTTPTRK 112.26 0.00010276 440870000 394280 348360 232660 149310 383450 367410 435980 440970 285760 452770 TRUE FALSE FALSE 366643.0081 320754.6849 322752.1829 347601.2257 335354.1255 322082.6898 326893.1927 340570.7573 310529.9069 339393.445 1.080289008 0.945082145 0.950967638 1.024183675 0.988098416 0.948995022 0.963168846 1.003468872 0.914955523 1 18.37259918 -6.069566035 8.326166045 0.966329808 0.994338993 0.1207422 0.042483628 0.914886312 101.9069603 0.013762966 0.013800358 8.52E-07 6.069566035 0.028009185 SNVSSPATPTASSSSS(ph)TTPTRK ddPTM_HeLa_A485_30min_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTASSS(0.005)S(0.02)S(0.48)T(0.302)T(0.191)PT(0.002)RK 150.17 7.40E-10 787260000 94623 113390 93711 144170 170820 123960 201930 180290 100060 185980 TRUE FALSE FALSE 115671.5599 126649.9741 128378.5985 152045.642 153812.561 130450.3539 158786.0059 136073.5948 120141.1242 139618.6087 0.828482399 0.907113853 0.919494899 1.089006999 1.101662325 0.934333576 1.137283972 0.974609302 0.860495068 1 17.09113171 -5.035201253 3.90027885 1.018306157 0.873446888 0.361000467 0.079906846 0.241005151 7.880263292 0.022474441 0.04461526 9.22E-06 5.035201253 -0.144859269 SNVSSPATPTASSSSST(ph)TPTR ddPTM_HeLa_A485_30min_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTASSSSS(0.001)T(0.5)T(0.5)PTR 426 1.27E-193 350730000 121120 144330 144580 137930 168540 124850 161400 167040 120670 172890 TRUE FALSE FALSE 148062.7261 161208.138 198066.1585 145464.7666 151759.5658 131386.9529 126915.5715 126073.1781 144887.3621 129791.7048 1.140771873 1.242052705 1.526030949 1.120755497 1.169254738 1.012290833 0.977840392 0.971350043 1.116306796 1 16.98583866 -5.862325092 1.777489392 1.012922443 1.29020615 0.543117759 0.106948709 0.266855963 1.735587606 0.039709894 0.048592567 1.37E-06 5.862325092 0.277283707 SNVSSPATPTASSSSST(ph)TPTRK ddPTM_HeLa_A485_30min_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTAS(0.006)S(0.033)S(0.024)S(0.012)S(0.125)T(0.449)T(0.346)PT(0.005)RK 119.8 3.19E-05 779050000 70796 77130 42385 74133 94212 80369 114130 119180 61788 116610 TRUE FALSE FALSE 86544.32596 86149.68256 58064.97529 78182.69808 84831.92248 84576.99657 89745.19314 89950.91813 74188.28485 87541.27305 0.988611691 0.984103607 0.66328685 0.893095284 0.969050592 0.966138527 1.025175783 1.027525817 0.847466369 1 16.41767574 -5.735578435 4.909932941 0.976776405 0.872436664 0.17384614 0.096001868 0.328258675 19.69139593 0.03047506 0.038187937 1.84E-06 5.735578435 -0.104339741 SNVSSPATPTASSSSSTT(ph)PTR ddPTM_HeLa_A486_30min_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTASSSSST(0.236)T(0.752)PT(0.012)R 271.19 8.89E-72 168030000 223420 227830 157600 70435 252700 199900 232190 242320 193130 242430 TRUE FALSE FALSE 207759.4117 209775.9211 218626.9407 163976.2396 221004.0097 175238.3704 174093.6061 187149.0258 209870.6639 181723.95 1.143269292 1.154365844 1.203071695 0.902336976 1.216152354 0.964310815 0.958011347 1.029853389 1.1548872 1 17.47138904 -5.228949916 24.92779972 1.035207637 1.165648654 0.324923697 0.088882684 771.8423405 592201.0638 0.023593866 0.040861798 5.90E-06 5.228949916 0.130441017 SNVSSPATPTASSSSSTT(ph)PTRK ddPTM_HeLa_A486_30min_R1 2 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-2;Q12888-3;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTASSSS(0.007)S(0.083)T(0.288)T(0.615)PT(0.006)RK;SNVSSPATPTASSSSS(0.051)T(0.129)T(0.819)PTRK ; 164.34 7.39E-14 1415900000 431240 393190 229410 174108 398380 433840 558400 519930 310000 526130 TRUE FALSE FALSE 401012.3029 362032.1924 318243.6958 405332.2229 348411.4657 380317.2318 418682.4138 401553.289 336871.0496 394383.6235 1.016807694 0.917969639 0.806939429 1.027761293 0.883432894 0.964333226 1.061612067 1.01817942 0.854170989 1 18.58924012 -6.516081903 24.81513163 0.989000864 0.927958463 0.094514534 0.076815722 645.0230444 2354982.586 0.028581165 0.023005906 3.05E-07 6.516081903 -0.061042401 SNVVS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 SNVVSPTK 8 0 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 SNVVS(0.995)PT(0.005)K;SNVVS(0.999)PT(0.001)K ; 88.338 0.0042459 434780000 1133890 999560 589880 1246160 755470 833260 1231350 1024770 672890 1393360 TRUE FALSE FALSE 1386119.919 1116449.847 808101.159 1314234.565 680252.7542 876888.2051 968262.0133 773443.5507 807932.8509 1046020.995 1.325135849 1.067330247 0.772547743 1.256413181 0.650324188 0.838308418 0.925662122 0.73941494 0.77238684 1 19.99648038 -1.000000772 0.618305344 0.835978013 35.9274412 0.43425686 0.161111711 169.5027725 1.231097726 0.068481104 8076.987737 0.099999822 1.000000772 35.09146319 SNVVS(ph)PTK ddPTM_HeLa_A486_30min_R1 1 SNVVSPTK 8 0 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 SNVVS(0.998)PT(0.002)K 72.34 0.01502 285240000 426730 381550 162980 146760 241480 375750 436220 359480 290810 655650 TRUE FALSE FALSE 396818.4306 351314.5884 226090.2208 341664.6968 211191.3267 329393.7853 327073.1421 277634.2514 316017.6449 491470.9724 0.8074097 0.714822661 0.460027618 0.695187948 0.429712717 0.670220224 0.665498393 0.564904678 0.643003682 1 18.90674668 -8.05684848 21.22986386 1.000000001 0.620835303 0.511406064 0.109142474 2594.031885 968731.8123 0.104452159 0.026969432 8.77E-09 8.05684848 -0.379164698 SNVVS(ph)PTKNEDNGAPENSVEKPHEKPEAR ddPTM_HeLa_A485_30min_R1 1 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 S(0.001)NVVS(0.971)PT(0.029)KNEDNGAPENSVEKPHEKPEAR 251.25 4.87E-51 3668000000 753060 369670 217630 1271100 687630 611190 1333900 1199500 461180 1711700 TRUE FALSE FALSE 920575.599 412899.6908 298140.3933 1340536.974 619167.1428 643190.9633 1048901.368 905320.7443 553734.5958 1285004.692 0.716398629 0.321321543 0.232015023 1.043215627 0.481840375 0.500535887 0.816262676 0.70452719 0.430920291 1 20.2933422 -14 0.14488002 2.405272501 0.449073457 0.218825559 0.231677375 212.8863306 1.859388862 86.86142798 1.313867712 1.00E-14 14 -1.956199044 SNVVS(ph)PTKNEDNGAPENSVEKPHEKPEAR ddPTM_HeLa_A486_30min_R1 2 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 S(0.004)NVVS(0.498)PT(0.498)KNEDNGAPENSVEKPHEKPEAR;SNVVS(0.858)PT(0.142)KNEDNGAPENSVEKPHEKPEAR ; 236.59 6.45E-50 5786840000 3189540 2484240 746380 2100850 2037590 3957250 5523080 4800070 1855380 6435240 TRUE FALSE FALSE 2965969.717 2287379.775 1035398.325 4890884.971 1782016.462 3469044.729 4141146.967 3707198.846 2016205.832 4823814.018 0.614859882 0.474184902 0.214643086 1.013904133 0.36942064 0.719149768 0.858479815 0.768520269 0.41796923 1 22.20174285 -5.251740782 24.96480734 0.714912591 0.438524878 0.278627412 0.220046115 951.8198495 2450039.606 0.058222759 0.099254774 5.60E-06 5.251740782 -0.276387713 SNVVSPT(ph)KNEDNGAPENSVEKPHEKPEAR ddPTM_HeLa_A485_30min_R1 4 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 SNVVS(0.179)PT(0.82)KNEDNGAPENSVEKPHEKPEAR;S(0.005)NVVS(0.399)PT(0.596)KNEDNGAPENSVEKPHEKPEAR;SNVVS(0.122)PT(0.878)KNEDNGAPENSVEKPHEKPEAR;S(0.002)NVVS(0.172)PT(0.826)KNEDNGAPENSVEKPHEKPEAR ;;; 213.1 9.39E-30 5257560000 2455780 1357910 697943 4537580 2411490 2277800 4381920 4045080 1499623 5961500 TRUE FALSE FALSE 3002059.789 1516705.762 956141.1595 4785456.506 2171393.588 2397062.086 3445686.995 3053017.788 1800583.581 4475407.763 0.670790227 0.338897781 0.213643362 1.069278323 0.485183407 0.535607527 0.769915766 0.682176452 0.402328386 1 22.0935877 -14 0.172435146 2.591743027 0.484073896 0.22205966 0.232002049 209.1242688 1.982111742 114.8800756 0.821635776 1.00E-14 14 -2.10766913 SNVVSPT(ph)KNEDNGAPENSVEKPHEKPEAR ddPTM_HeLa_A486_30min_R1 1 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 S(0.002)NVVS(0.137)PT(0.861)KNEDNGAPENSVEKPHEKPEAR 140.88 7.66E-08 595920000 571020 386160 117710 374910 365860 639880 1005600 871480 325770 1083600 TRUE FALSE FALSE 530994.4468 355559.2752 163290.4644 872809.4269 319970.4273 560938.1114 753988.2438 673063.0283 354008.0059 812259.5069 0.653725124 0.437740983 0.201032383 1.074545043 0.393926355 0.690589777 0.928260288 0.828630533 0.435831163 1 19.6315812 -5.250171681 24.97084226 0.745698193 0.431523672 0.30058953 0.232024305 966.101706 2141016.581 0.061947204 0.106051795 5.62E-06 5.250171681 -0.314174522 SNYNFEKPFLWLAR ddPTM_HeLa_A485_30min_R1 4 SNYNFEKPFLWLAR 14 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ;;; ;;; 256.52 1.80E-41 725297000 793490 970350 811560 933340 1204020 1146680 1580770 1686330 798510 1382400 FALSE FALSE TRUE 969999.113 1083823.992 1111789.816 984326.0009 1084143.541 1206718.392 1243025.576 1272754.923 958763.6326 1037793.121 0.934674834 1.044354573 1.071301971 0.948479982 1.044662485 1.16277355 1.197758542 1.226405242 0.923848514 1 19.98508745 -6.067596425 5.483998961 1.121429208 1.006570716 0.197859863 0.093036799 0.314974168 18.14662733 0.030655469 0.031086076 8.56E-07 6.067596425 -0.114858492 SNYNFEKPFLWLAR ddPTM_HeLa_A486_30min_R1 4 SNYNFEKPFLWLAR 14 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ;;; ;;; 230.26 1.78E-27 806192000 581830 773520 573670 312883 1040720 825250 960720 903170 770600 949710 FALSE FALSE TRUE 541046.7216 712223.4581 795810.3874 728407.4362 910183.1933 723439.0455 720337.6945 697537.9071 837396.2285 711896.4344 0.760007629 1.00045937 1.117873821 1.023192983 1.278533153 1.016213891 1.011857427 0.979830595 1.176289398 1 19.44130785 -4.295121985 2.838948196 1.075624804 0.715701974 0.532098795 0.088721289 0.29231795 3.460009345 0.022807521 0.233968703 5.07E-05 4.295121985 -0.359922831 SPAAPYFLGSSFS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 SPAAPYFLGSSFSPVR 16 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 SPAAPYFLGS(0.001)S(0.009)FS(0.991)PVR;SPAAPYFLGSS(0.005)FS(0.994)PVR ; 159.04 4.71E-09 610450000 166550 188133 218010 178302 256360 182994 238080 236910 194080 199152 TRUE FALSE FALSE 203598.4729 210133.5178 298660.9712 188042.1868 230835.8983 192575.2829 187212.2631 178807.451 233030.0758 149507.0715 1.36179828 1.405508888 1.997637758 1.257747776 1.543979799 1.288068055 1.25219671 1.195979891 1.558655878 1 17.1898542 -6.154165874 1.53363683 1.262215852 1.542548869 0.237241693 0.224180009 0.607124663 2.864280275 0.094427489 0.0930849 7.01E-07 6.154165874 0.280333017 SPAAPYFLGSSFS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 SPAAPYFLGSSFSPVR 16 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 SPAAPYFLGSS(0.002)FS(0.998)PVR;SPAAPYFLGSSFS(1)PVR ; 237.34 2.29E-41 618280000 268630 264840 251812 85818 283790 258399 275930 300260 254441 247584 TRUE FALSE FALSE 249800.4242 243853.1139 349320.3502 199788.641 248194.412 226520.3586 206889.3955 231897.3526 276496.1507 185587.3549 1.345999162 1.313953281 1.882242195 1.076520764 1.337345489 1.220559228 1.114781746 1.249532075 1.489843696 1 17.50173889 -5.311012221 24.99989711 1.224498662 1.494056299 0.335724009 0.193175103 447.9088572 225882.3232 0.053469774 0.079308663 4.89E-06 5.311012221 0.269557636 SPAEGSERLS(ph)LS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 SPAEGSERLSLSPLR 15 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 SPAEGSERLS(1)LS(1)PLR 80.236 0.0049207 79392000 209270 276230 216760 80124 229610 246220 218550 215630 257800 223450 TRUE FALSE FALSE 194601.2537 254340.5288 300695.277 186532.7212 200810.1728 215843.8798 163866.4784 166535.7562 280146.3116 167496.6656 1.161821658 1.518481146 1.795231421 1.113650356 1.198890569 1.288645831 0.978326809 0.994263113 1.672548588 1 17.35377285 -5.295371746 24.85928264 1.174962555 1.494508556 0.266650079 0.238425435 743.5340204 544720.7511 0.066748881 0.09901032 5.07E-06 5.295371746 0.319546001 SPAEVKS(ph)PEK ddPTM_HeLa_A485_30min_R1 4 SPAEVKSPEK 10 1 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 SPAEVKS(1)PEK;SPAEVKS(1)PEK;S(0.001)PAEVKS(0.999)PEK;SPAEVKS(1)PEK ;;; 84.566 0.0023013 3807170000 2314950 1619840 992720 5185610 2573780 2082640 4362240 4252670 1673660 7110900 TRUE FALSE FALSE 2829902.641 1809266.197 1359968.439 5468886.744 2317525.426 2191683.81 3430211.788 3209696.015 2009548.21 5338283.496 0.530114716 0.338922839 0.254757628 1.024465401 0.434133074 0.410559651 0.642568307 0.60125994 0.376440894 1 22.34794449 -11.15802368 2.292199028 2.11453361 0.51606865 0.337807388 0.204677767 7702495.109 1869161.88 44559814.7 0.054490367 6.95E-12 11.15802368 -1.59846496 SPAEVKS(ph)PEK ddPTM_HeLa_A486_30min_R1 5 SPAEVKSPEK 10 1 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 SPAEVKS(1)PEK;SPAEVKS(1)PEK;SPAEVKS(1)PEK;SPAEVKS(1)PEK;S(0.013)PAEVKS(0.987)PEK ;;;; 112.15 0.00031335 5116910000 3314090 2515040 943624 2796490 2032950 3610850 5245450 4321920 2050070 7245770 TRUE FALSE FALSE 3081789.405 2315739.071 1309020.484 6510370.047 1777958.454 3165380.039 3932982.929 3337913.163 2227771.718 5431382.03 0.567404279 0.426362767 0.241010571 1.198658097 0.32734918 0.582794586 0.724121947 0.614560556 0.41016664 1 22.37288791 -10.99496547 2.798506745 1.415908128 0.570357164 0.21080901 0.251881017 83830182.42 31895062.74 224818671.1 0.063033387 1.01E-11 10.99496547 -0.845550965 SPAEVKS(ph)PEKAK ddPTM_HeLa_A485_30min_R1 2 SPAEVKSPEKAK 12 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 SPAEVKS(1)PEKAK;S(0.094)PAEVKS(0.906)PEKAK ; 99.451 0.00050983 510880000 349660 301270 173001 795020 524850 533700 1116680 1086500 321980 1249070 TRUE FALSE FALSE 427440.6607 336500.9058 237001.2691 838449.9295 472594.0911 561643.7067 878092.1956 820034.1714 386598.4326 937699.8364 0.455839538 0.358857806 0.252747478 0.894155994 0.503992933 0.598958947 0.936432066 0.874516705 0.41228378 1 19.83876666 -5.255991836 24.99725124 0.732288415 0.356119215 0.47416634 0.187805772 410.5468246 1883879.191 0.051207973 0.085503612 5.55E-06 5.255991836 -0.3761692 SPAEVKS(ph)PEKAK ddPTM_HeLa_A486_30min_R1 2 SPAEVKSPEKAK 12 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 S(0.002)PAEVKS(0.998)PEKAK;SPAEVKS(1)PEKAK ; 102.64 0.00035346 568450000 855140 563890 242540 1084310 639300 1047080 1784580 1626260 465330 2351000 TRUE FALSE FALSE 795199.1019 519205.3027 336457.9834 2524328.478 559113.0328 917901.9155 1338059.209 1255996.099 505665.1791 1762294.298 0.451229459 0.294618954 0.190920429 1.432410286 0.317264281 0.520856203 0.759271145 0.71270508 0.286935718 1 20.74902344 -14 0.059699206 2.261310366 5.39E-14 0.118515913 0.345960841 983.0959724 4.279722119 192.2239879 32.26140062 1.00E-14 14 -2.261310366 SPAGPAATPAQAQAAST(ph)PR ddPTM_HeLa_A485_30min_R1 3 SPAGPAATPAQAQAASTPR 19 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SPAGPAATPAQAQAAS(0.196)T(0.804)PR;SPAGPAATPAQAQAAS(0.013)T(0.987)PR;SPAGPAATPAQAQAAS(0.029)T(0.971)PR ;; 328.73 4.00E-101 2424330000 858240 844820 1023010 1023940 1131070 794310 971850 705180 869880 1306210 TRUE FALSE FALSE 1049152.527 943614.35 1401463.97 1079875.249 1018456.699 835898.8434 764206.3082 532233.4993 1044456.937 980595.886 1.069913246 0.96228667 1.429196257 1.101243912 1.038610006 0.85243968 0.779328487 0.542765381 1.065124739 1 19.90329918 -6.144174073 2.293766092 0.808947685 1.146831561 0.38892931 0.171888139 0.293760315 3.033214334 0.064074274 0.063841888 7.18E-07 6.144174073 0.337883876 SPAGPAATPAQAQAAST(ph)PR ddPTM_HeLa_A486_30min_R1 2 SPAGPAATPAQAQAASTPR 19 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SPAGPAATPAQAQAAS(0.039)T(0.961)PR;SPAGPAATPAQAQAAS(0.233)T(0.767)PR ; 279.05 7.15E-69 2159900000 480480 593030 488090 174911 593940 507050 517390 522470 537960 464210 TRUE FALSE FALSE 446800.8332 546036.143 677091.5195 407201.6475 519442.5069 444495.3263 387933.5496 403514.9864 584590.8059 347968.7945 1.28402558 1.569210089 1.945839771 1.170224612 1.492784741 1.277399966 1.114851549 1.159629808 1.680009286 1 18.40859841 -5.295714272 24.99607207 1.280390235 1.596643956 0.288826346 0.236215533 786.4562807 573546.9533 0.066124543 0.098084181 5.06E-06 5.295714272 0.316253721 SPAGSQQQFGYSPGQQQTHPQGS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 0 SPAGSQQQFGYSPGQQQTHPQGS(1)PR;SPAGSQQQFGYSPGQQQTHPQGS(1)PR;SPAGSQQQFGYSPGQQQT(0.318)HPQGS(0.682)PR ;; 204.81 1.24E-28 1700210000 203871 326400 286010 191615 323570 300020 305663 381290 262363 294831 TRUE FALSE FALSE 249221.4006 364569.6407 391817.0009 202082.4423 291354.2347 315728.5833 240355.603 287778.0297 315016.8476 221335.0577 1.125991532 1.647139159 1.770243743 0.913015969 1.316349239 1.42647345 1.085935529 1.300191812 1.423257802 1 17.75587245 -13.78931901 0.084132462 2.16E-12 1.637093434 0.141894234 0.243142969 442.0576826 2.71720565 83.37729981 7.477953058 1.62E-14 13.78931901 1.637093434 SPAGSQQQFGYSPGQQQTHPQGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 0 SPAGSQQQFGYSPGQQQTHPQGS(1)PR;SPAGSQQQFGYSPGQQQT(0.001)HPQGS(0.999)PR;SPAGSQQQFGYSPGQQQTHPQGS(1)PR;SPAGSQQQFGYSPGQQQT(0.062)HPQGS(0.938)PR ;;; 228.52 1.33E-38 1548060000 322989 311380 240915 70442.6 343620 287287 312304 326882 251374 321947 TRUE FALSE FALSE 300349.139 286705.1148 334203.7399 163993.9328 300519.9755 251844.4509 234162.236 252458.1044 273163.3007 241329.3757 1.244561041 1.188024102 1.384844837 0.679544015 1.245268938 1.043571468 0.97030142 1.046114273 1.131910692 1 17.88064401 SPALKS(ph)PLQSVVVR ddPTM_HeLa_A485_30min_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.003)PALKS(0.996)PLQS(0.001)VVVR;SPALKS(0.977)PLQS(0.023)VVVR ; 132.62 7.71E-06 2616400000 1077120 1226460 981050 1352080 1533010 1254090 1834120 1853980 1190070 1783250 TRUE FALSE FALSE 1316721.628 1369883.828 1343981.22 1425940.707 1380378.142 1319752.213 1442245.279 1399288.498 1428906.133 1338718.593 0.983568641 1.0232799 1.003931092 1.065153434 1.031118973 0.985832437 1.077332672 1.045244688 1.067368557 1 20.3524213 -1.796957975 0.568847795 1.04103608 3.26E-09 0.234010035 0.028773098 80.24459541 1.805904708 0.01370793 95.33187938 0.015960336 1.796957975 -1.041036077 SPALKS(ph)PLQSVVVR ddPTM_HeLa_A486_30min_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 SPALKS(1)PLQSVVVR;S(0.001)PALKS(0.917)PLQS(0.081)VVVR ; 188.96 6.06E-18 3202400000 2017910 2300100 1358920 865780 2291000 2320600 2709600 2614500 1767320 2606700 TRUE FALSE FALSE 1876464.929 2117831.699 1885130.217 2015579.594 2003641.417 2034307.966 2031629.421 2019235.424 1920512.721 1953965.353 0.960336849 1.083863486 0.964771568 1.031532924 1.025423206 1.041117726 1.039746901 1.033403904 0.982879618 1 20.89797346 SPAPEQFQS(ph)R ddPTM_HeLa_A485_30min_R1 2 SPAPEQFQSR 10 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 SPAPEQFQS(1)R;SPAPEQFQS(1)R ; 136.27 4.09E-05 1291060000 409530 500300 481750 351210 456190 505460 493180 476850 422240 514000 TRUE FALSE FALSE 500628.5356 558805.733 659969.3723 370395.713 410770.1218 531925.104 387808.0641 359901.7898 506979.695 385869.2595 1.297404557 1.448173751 1.710344517 0.95989951 1.064531863 1.378511221 1.005024512 0.932703969 1.313863913 1 18.55775259 -5.269831588 24.9990593 1.097682352 1.481594228 0.536470669 0.166852363 478.0543782 1424047.872 0.047348079 0.071547733 5.37E-06 5.269831588 0.383911875 SPAPEQFQS(ph)R ddPTM_HeLa_A486_30min_R1 2 SPAPEQFQSR 10 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 SPAPEQFQS(1)R;SPAPEQFQS(1)R ; 150.14 3.80E-06 1282860000 440160 526890 411120 135229 503120 416280 506170 409190 478530 575010 TRUE FALSE FALSE 409307.057 485137.3175 570316.6742 314819.9461 440013.9982 364923.606 379520.9123 316026.3696 520009.3657 431023.7533 0.94961601 1.125546594 1.323167621 0.730400456 1.020857887 0.846643841 0.880510434 0.733199428 1.20645176 1 18.71740785 -5.263879169 24.99872915 0.905641797 1.132053721 0.281943348 0.157185726 257.6726532 2640189.656 0.042177523 0.066068907 5.45E-06 5.263879169 0.226411924 SPAPEQFQS(ph)REDFR ddPTM_HeLa_A485_30min_R1 2 SPAPEQFQSREDFR 14 1 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(0.062)PAPEQFQS(0.938)REDFR;SPAPEQFQS(1)REDFR ; 85.362 0.00096799 1468140000 530360 660360 810570 599940 1215260 960290 1145130 1406190 864770 1102820 TRUE FALSE FALSE 648336.7523 737583.3576 1110433.574 632713.2031 1094264.447 1010569.3 900463.6206 1061319.698 1038321.407 827907.2699 0.783103103 0.890900931 1.341253561 0.764231969 1.321723443 1.220631025 1.087638258 1.281930642 1.254151817 1 19.65910966 -3.633364144 0.733968365 1.1818895 1.89E-13 0.327480452 0.173095744 7.044300104 1.500718342 0.065351128 8.485533283 0.000232614 3.633364144 -1.1818895 SPAPEQFQS(ph)REDFR ddPTM_HeLa_A486_30min_R1 2 SPAPEQFQSREDFR 14 1 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 SPAPEQFQS(1)REDFR;SPAPEQFQS(1)REDFR ; 116.6 7.46E-05 831190000 485430 705230 1014400 337360 1626310 831510 1101930 1126680 787450 754910 TRUE FALSE FALSE 451403.8638 649345.0064 1407202.847 785391.1292 1422323.035 728926.7504 826215.459 870159.5593 855706.8 565875.6224 0.797708623 1.147504824 2.486770575 1.38792183 2.51349056 1.288139516 1.460065474 1.537722292 1.51218177 1 19.11012546 -8.584144227 0.767300455 0.994297529 1.625595383 0.099970789 0.513282682 4.902665302 4.384950023 0.592454983 0.184031362 2.61E-09 8.584144227 0.631297853 SPAPGS(ph)PDEEGGAEAPAAGIR ddPTM_HeLa_A486_30min_R1 1 SPAPGSPDEEGGAEAPAAGIR 21 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 SPAPGS(1)PDEEGGAEAPAAGIR 276.27 1.33E-72 1924800000 191030 277830 192150 49169 306830 247270 289600 316420 213850 216940 TRUE FALSE FALSE 177639.7835 255813.739 266555.626 114467.9169 268344.5203 216764.3415 217139.0169 244378.0734 232386.6902 162616.812 1.092382647 1.573107577 1.639164012 0.703911948 1.650164685 1.332976209 1.335280248 1.502784801 1.429044681 1 17.31111689 -10.04078141 4.901930951 0.999993798 1.368054115 0.137785939 0.271365112 2.09E-05 4.09E-06 0.253270591 0.061425921 9.10E-11 10.04078141 0.368060317 SPAVATSTAAPPPPS(ph)SPLPSK ddPTM_HeLa_A485_30min_R1 1 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 SPAVATSTAAPPPPS(0.961)S(0.039)PLPSK 256.11 8.74E-59 2097500000 1582700 1948900 1536400 1712400 2180000 2045300 2701600 2844000 1691700 2380000 TRUE FALSE FALSE 1934766.155 2176806.902 2104778.295 1805944.076 1962951.546 2152388.745 2124381.09 2146504.541 2031208.673 1786709.801 1.082865362 1.218332659 1.178019113 1.010765193 1.098640386 1.20466611 1.188990562 1.201372791 1.13684308 1 20.7688739 -11.19505111 2.127003014 0.612994823 1.148890377 0.329989229 0.06265153 1933381.701 360489.1547 3604829.241 0.018059415 6.38E-12 11.19505111 0.535895554 SPAVATSTAAPPPPSS(ph)PLPSK ddPTM_HeLa_A485_30min_R1 4 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 SPAVATSTAAPPPPS(0.063)S(0.937)PLPSK;SPAVATSTAAPPPPS(0.354)S(0.646)PLPSK;SPAVATSTAAPPPPS(0.001)S(0.999)PLPSK;SPAVATSTAAPPPPS(0.4)S(0.6)PLPSK ;;; 338.23 1.51E-114 6904080000 3499630 4276980 3443030 3828970 4918160 4471100 5616080 6213740 3754800 5121930 TRUE FALSE FALSE 4278110.62 4777135.606 4716750.073 4038136.936 4428490.722 4705199.882 4416158.629 4689810.522 4508353.919 3845127.113 1.112605772 1.242386914 1.226682483 1.050195954 1.151715039 1.223678631 1.148507838 1.219676329 1.172485014 1 21.87459986 -9.936270865 6.215996413 0.999999958 1.173724856 0.452018404 0.05678266 3.38E-08 5.88E-09 0.055710155 0.013511694 1.16E-10 9.936270865 0.173724899 SPAVATSTAAPPPPSS(ph)PLPSK ddPTM_HeLa_A486_30min_R1 4 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 SPAVATSTAAPPPPS(0.058)S(0.942)PLPSK;SPAVATSTAAPPPPS(0.232)S(0.768)PLPSK;SPAVATSTAAPPPPS(0.05)S(0.95)PLPSK;SPAVATSTAAPPPPS(0.012)S(0.988)PLPSK ;;; 291.68 4.81E-87 8455500000 8622000 9026000 6072980 2996010 9290200 8667800 9777200 9772500 7590940 10318200 TRUE FALSE FALSE 8017642.324 8310746.888 8424600.496 6974862.69 8124936.488 7598454.964 7330841.147 7547515.082 8248928.791 7734455.56 1.036613665 1.074509618 1.089229931 0.901791036 1.050485897 0.982416268 0.947816054 0.97583017 1.066517058 1 22.88286831 -5.220216145 24.99983657 0.988796518 1.067556947 0.376358103 0.045722338 519.4097103 314995.4048 0.012080056 0.020923008 6.02E-06 5.220216145 0.078760429 SPAVQS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 SPAVQSPAK 9 0 A0A087WT04;U3KQ54 A0A087WT04 PMF1-BGLAP 1 0 SPAVQS(1)PAK 83.137 0.0044026 0 266420 251660 136230 123510 266790 284120 350920 364260 223260 423280 TRUE FALSE FALSE 247745.3338 231717.5451 188981.9044 287537.5218 233326.7105 249068.1631 263116.1043 281325.9497 242612.3566 317287.9329 0.780821797 0.730306832 0.595616425 0.90623529 0.735378457 0.784990973 0.82926603 0.886658207 0.764644134 1 18.27543313 -13.99999999 0.095976283 1.739983012 0.611495662 0.468477714 0.077252926 168.2962921 1.106608474 24.86520507 1.468236922 1.00E-14 13.99999999 -1.12848735 SPCETISS(ph)PSSTLESK ddPTM_HeLa_A485_30min_R1 1 SPCETISSPSSTLESK 16 0 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 SPCETIS(0.156)S(0.399)PS(0.399)S(0.041)T(0.004)LESK 134.14 2.76E-07 0 199060 167050 155130 271890 237560 204110 300300 259180 173180 402660 TRUE FALSE FALSE 243340.2103 186585.0444 212519.0425 286742.6622 213907.6923 214796.884 236138.4518 195615.6986 207935.6375 302284.2724 0.805004535 0.617250255 0.703043664 0.948586111 0.707637518 0.710579093 0.781180079 0.647124963 0.687881099 1 18.20554639 -10.73187152 2.842444765 1.04607335 0.733537165 0.446371349 0.088783664 39899832.81 34723404.71 13017728.16 0.022385393 1.85E-11 10.73187152 -0.312536184 SPDEALPGGLSGCSSGSGHS(ph)PYALER ddPTM_HeLa_A485_30min_R1 2 SPDEALPGGLSGCSSGSGHSPYALER 26 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 SPDEALPGGLSGCSSGSGHS(0.994)PY(0.005)ALER;SPDEALPGGLSGCSSGS(0.001)GHS(0.998)PYALER ; 158.05 5.70E-10 800470000 298530 478420 461580 204290 513820 351690 439730 426650 427290 371440 TRUE FALSE FALSE 364936.9686 534367.0573 632337.6499 215449.8454 462662.2767 370103.9446 345778.0932 322013.4185 513043.1837 278846.8438 1.308736235 1.916346084 2.26768803 0.77264581 1.659198542 1.327266034 1.240028714 1.154803885 1.839874451 1 18.08911342 -5.254438097 24.99983469 1.306781227 1.839465674 0.32610484 0.358710661 661.3200855 2361403.792 0.095085534 0.160280585 5.57E-06 5.254438097 0.532684447 SPDKPGGS(ph)PSASR ddPTM_HeLa_A485_30min_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 SPDKPGGS(0.998)PS(0.002)ASR 99.663 0.00040582 205070000 168160 169200 142010 215130 200810 183540 254500 262430 160070 246200 TRUE FALSE FALSE 205566.6119 188986.4682 194545.4085 226882.0072 180816.6513 193149.8706 200123.9959 198068.631 192194.5808 184826.871 1.112211719 1.02250537 1.052581843 1.227537998 0.978302832 1.045031329 1.082764616 1.071644128 1.039862763 1 17.49581499 SPDKPGGS(ph)PSASR ddPTM_HeLa_A486_30min_R1 2 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 SPDKPGGS(0.992)PS(0.008)ASR;SPDKPGGS(0.999)PS(0.001)ASR ; 140.28 1.11E-06 543200000 685910 668450 402370 319880 663420 703000 841950 807240 545500 946050 TRUE FALSE FALSE 637831.251 615479.5875 558178.4398 744696.8058 580207.6775 616271.0076 631285.2048 623449.0739 592784.3792 709152.9222 0.899426952 0.867908131 0.787105887 1.050121606 0.818170044 0.869024139 0.890196155 0.879146168 0.835904867 1 19.43573724 -10.67521981 3.306904345 1.010286056 0.878020117 0.234852966 0.06635586 12560533.4 20384628.17 827007.4596 0.015391343 2.11E-11 10.67521981 -0.132265939 SPDKPGGS(ph)PSASRR ddPTM_HeLa_A485_30min_R1 1 SPDKPGGSPSASRR 14 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 SPDKPGGS(0.994)PS(0.006)ASRR 92.439 0.00055008 301100000 131620 177830 112640 139470 209450 205830 254090 301800 138060 199340 TRUE FALSE FALSE 160898.4149 198625.6716 154310.2233 147088.8929 188596.4226 216606.9405 199801.5958 227783.0768 165767.3756 149648.2066 1.075177702 1.327284009 1.031153175 0.982897799 1.26026517 1.447440938 1.335141933 1.522123666 1.107713747 1 17.19121546 -5.964669288 10.4832742 1.322344099 1.115494898 0.190501883 0.166395261 0.665689701 192.683596 0.05024489 0.056895548 1.08E-06 5.964669288 -0.206849201 SPDLEAS(ph)LDTLENNCHVGSDIDFRPK ddPTM_HeLa_A485_30min_R1 1 SPDLEASLDTLENNCHVGSDIDFRPK 26 1 Q13111;Q13111-2;Q13111-3;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(0.078)PDLEAS(0.723)LDT(0.199)LENNCHVGSDIDFRPK 75.758 0.0053733 103400000 10715 12909 9830.5 13450 13270 12093 15306 19608 12892 16816 TRUE FALSE FALSE 13098.51478 14418.59526 13467.21103 14184.73944 11948.79221 12726.17078 12035.74806 14799.10726 15479.30615 12624.08068 1.037581676 1.14215012 1.066787466 1.123625538 0.946507909 1.008086934 0.953396003 1.172291879 1.226172942 1 13.62389071 -10.05403409 4.82289967 0.999998032 1.071842566 0.061166938 0.087484322 1.97E-06 3.86E-07 0.089990582 0.021825324 8.83E-11 10.05403409 0.071844534 SPDS(ph)PKTPK ddPTM_HeLa_A485_30min_R1 1 SPDSPKTPK 9 1 O00716 O00716 E2F3 Transcription factor E2F3 1 0 S(0.006)PDS(0.977)PKT(0.017)PK 54.471 0.020865 213890000 314780 290880 165020 469080 318910 381250 599640 594800 258840 692300 TRUE FALSE FALSE 384801.725 324895.8857 226067.7651 494704.6526 287158.2006 401211.6605 471522.0154 448924.3674 310786.8138 519722.3508 0.740398646 0.625133564 0.434977954 0.95186334 0.552522323 0.771973073 0.907257528 0.863777297 0.597986239 1 18.98738158 -6.181852157 0.982819824 0.835142519 0.637777726 0.201065904 0.159428597 0.917765227 1.892815545 0.088256643 0.087132882 6.58E-07 6.181852157 -0.197364792 SPDS(ph)PKTPK ddPTM_HeLa_A486_30min_R1 1 SPDSPKTPK 9 1 O00716 O00716 E2F3 Transcription factor E2F3 1 0 S(0.004)PDS(0.977)PKT(0.019)PK 55.401 0.019947 122240000 406390 352060 200100 249430 397620 423850 586230 560730 285830 767910 TRUE FALSE FALSE 377904.1596 324161.4834 277584.0789 580685.6455 347746.7919 371559.6964 439549.0535 433064.0196 310605.9745 575620.3377 0.656516344 0.563151547 0.482234662 1.008799737 0.60412527 0.645494386 0.763609318 0.752343153 0.539602155 1 19.13475804 -11.49627762 2.122001778 4.700887098 0.672570229 0.331456589 0.141158877 4171178.743 265023.7715 74444370.09 0.038677271 3.19E-12 11.49627762 -4.028316868 SPEKEEAKS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 SPEKEEAKSPEK 12 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 S(0.001)PEKEEAKS(0.999)PEK 64.537 0.0090106 168100000 205290 131940 72427 619300 191870 157840 358910 220800 124940 786350 TRUE FALSE FALSE 250956.0523 147369.2353 99220.76124 653130.7908 172766.7491 166104.2583 282225.9465 166648.4538 150014.312 590327.4167 0.425113327 0.249639829 0.168077508 1.106387358 0.292662587 0.281376493 0.478083752 0.282298347 0.254120523 1 19.17115582 -10.52724144 2.921679817 1.025025458 0.396229559 0.340299242 0.253474465 83330320.59 91774156.22 16574370.49 0.064458954 2.97E-11 10.52724144 -0.628795899 SPEKEEAKS(ph)PEK ddPTM_HeLa_A486_30min_R1 3 SPEKEEAKSPEK 12 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 SPEKEEAKS(1)PEK;SPEKEEAKS(1)PEK;SPEKEEAKS(1)PEK ;; 67.605 0.0061352 575450000 495110 355437 112220 674900 265027 752520 1073490 795120 338190 1591770 TRUE FALSE FALSE 460405.3458 327270.8776 155674.5894 1571201.308 231784.8424 659681.7335 804891.4478 614088.5333 367504.5815 1193180.431 0.385863976 0.274284483 0.130470284 1.316817865 0.194257998 0.552876762 0.674576474 0.514665274 0.308004198 1 20.18638079 -11.61836919 2.018150858 9.999305802 0.491570619 0.188691141 0.320887546 18319359.15 647331.4036 757894632.5 0.079598423 2.41E-12 11.61836919 -9.507735183 SPEKIEEVLSPEGSPSKS(ph)PSK ddPTM_HeLa_A485_30min_R1 1 SPEKIEEVLSPEGSPSKSPSK 21 2 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 SPEKIEEVLSPEGS(0.301)PS(0.199)KS(0.495)PS(0.005)K 121.91 3.83E-06 91858000 80271 70879 48836 172380 179870 169960 355780 411600 99660 329840 TRUE FALSE FALSE 98127.00702 79167.68248 66902.46864 181796.6829 161961.5112 178858.8428 279764.6965 310654.4546 119660.8479 247616.9583 0.396285488 0.319718339 0.270185326 0.734185107 0.654080853 0.722320652 1.1298285 1.254576653 0.483249809 1 17.9177506 -5.754100512 1.006123663 0.967259747 0.30985146 0.576990997 0.211205503 0.38267231 0.82896064 0.097851557 0.153255011 1.76E-06 5.754100512 -0.657408287 SPEPEAT(ph)LTFPFLDK ddPTM_HeLa_A486_30min_R1 1 SPEPEATLTFPFLDK 15 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.447)PEPEAT(0.51)LT(0.043)FPFLDK 67.93 0.013963 214380000 20245 23957 10037 9261.4 15834 18486 20983 20658 17055 27877 TRUE FALSE FALSE 18825.93005 22058.56007 13923.5952 21561.00725 13847.95207 16205.38527 15732.83146 15954.62436 18533.34113 20896.41775 0.90091662 1.055614428 0.666314933 1.031803992 0.662695025 0.775510208 0.752896102 0.763510021 0.88691475 1 14.35096802 -4.747840988 24.99416948 0.80733393 0.978265517 0.21006363 0.123494718 316.7360008 582158.4803 0.029361803 0.076756156 1.79E-05 4.747840988 0.170931587 SPFIEEQLHTVLEKS(ph)PENSPPVKPK ddPTM_HeLa_A486_30min_R1 1 SPFIEEQLHTVLEKSPENSPPVKPK 25 2 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 SPFIEEQLHTVLEKS(0.997)PENS(0.003)PPVKPK 141.12 5.78E-08 156690000 183800 180060 68572 137100 156950 219530 301940 282910 127870 321150 TRUE FALSE FALSE 170916.5691 165791.3898 95124.91482 319175.7287 137263.8675 192446.6206 226391.4184 218497.5689 138953.8746 240731.9497 0.70998706 0.688697076 0.395148691 1.325855289 0.57019381 0.799422847 0.940429464 0.90763843 0.577214095 1 17.8770681 SPFNSPS(ph)PQDSPR ddPTM_HeLa_A485_30min_R1 2 SPFNSPSPQDSPR 13 0 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 SPFNS(0.044)PS(0.956)PQDSPR;SPFNS(0.001)PS(0.999)PQDSPR ; 142.03 1.13E-07 782600000 169060 183050 232150 231320 252990 184530 233560 194620 221580 291120 TRUE FALSE FALSE 206666.8137 204456.1052 318031.9456 243956.4259 227801.4273 194191.7055 183657.998 146889.1398 266049.0735 218549.1417 0.945630864 0.93551548 1.455196498 1.116254331 1.042335035 0.888549385 0.840351038 0.672110349 1.217342111 1 17.73759819 -6.087380165 3.095661295 0.898020158 1.12264433 0.182543394 0.185512668 0.405940914 7.512164021 0.065928052 0.067853549 8.18E-07 6.087380165 0.224624171 SPFNSPSPQDS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SPFNSPSPQDSPR 13 0 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 SPFNSPSPQDS(1)PR;SPFNSPSPQDS(1)PR ; 227.63 1.12E-27 341840000 185631 217940 163213 53744 188791 175968 191328 201026 172104 194623 TRUE FALSE FALSE 172619.2255 200669.6407 226413.4446 125118.7481 165111.0724 154258.8573 143455.7107 155256.7682 187022.1133 145888.134 1.18323006 1.375503512 1.551966143 0.857634851 1.13176492 1.057377684 0.983326791 1.064217931 1.28195562 1 17.15450302 -5.259438441 24.99999404 1.056896698 1.37076026 0.5490563 0.131412087 135.30541 1690511.717 0.036100555 0.05874094 5.50E-06 5.259438441 0.313863562 SPFSVAVS(ph)PSLDLSK ddPTM_HeLa_A485_30min_R1 2 SPFSVAVSPSLDLSK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 SPFSVAVS(0.98)PS(0.02)LDLSK;SPFSVAVS(0.682)PS(0.318)LDLSK ; 121.79 4.93E-05 273970000 360140 371350 304150 391700 440950 378270 560590 573120 355690 597540 TRUE FALSE FALSE 440251.9005 414776.1522 416667.7417 413097.5792 397047.4697 398075.6323 440815.3669 432561.4214 427073.7204 448584.2749 0.981425175 0.924633732 0.928850531 0.920891797 0.885112323 0.88740434 0.982681274 0.964281286 0.952047908 1 18.77501952 -6.7771836 24.9993425 0.97177607 0.92020191 0.474836013 0.027406302 241.6944417 383768.9826 0.012094827 0.00818582 1.67E-07 6.7771836 -0.05157416 SPFSVAVS(ph)PSLDLSK ddPTM_HeLa_A486_30min_R1 1 SPFSVAVSPSLDLSK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 SPFSVAVS(0.732)PS(0.268)LDLSK 156.17 2.09E-08 74779000 195690 172250 101050 93208 166470 190910 232650 214400 137170 251530 TRUE FALSE FALSE 181973.1415 158600.2827 140179.2662 216992.9345 145589.7803 167357.4652 174438.5093 165585.8003 149060.006 188545.2508 0.965143066 0.841178879 0.743478107 1.150879874 0.772174211 0.887624931 0.925181136 0.878228434 0.790579478 1 17.52455129 SPFSVAVSPS(ph)LDLSK ddPTM_HeLa_A486_30min_R1 1 SPFSVAVSPSLDLSK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 SPFSVAVS(0.106)PS(0.894)LDLSK 192.96 2.41E-18 212540000 350330 309660 200250 160500 326210 323340 391490 398690 241000 420870 TRUE FALSE FALSE 325773.6761 285121.4138 277792.1629 373652.1112 285293.7 283449.5983 293535.0612 307916.9903 261890.074 315481.4126 1.032623993 0.903766125 0.880534167 1.184387087 0.904312231 0.898466873 0.930435359 0.976022606 0.83012838 1 18.26719548 SPFSVAVSPSLDLSK ddPTM_HeLa_A485_30min_R1 2 SPFSVAVSPSLDLSK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 227.48 1.22E-22 99042000 76396 93729 67475 87330 107591 105879 132395 140856 82469 131239 FALSE FALSE TRUE 93390.02664 104689.7912 92436.81037 92100.61677 96878.86227 111422.6607 104107.7267 106310.8451 99019.77185 98523.53257 0.947895637 1.062586658 0.938220626 0.934808308 0.983306828 1.130924337 1.056678785 1.079040127 1.005036759 1 16.58818074 -6.087159879 10.09952026 1.059332526 0.973103441 0.412486805 0.048286372 0.496345442 55.14176503 0.015874055 0.015883182 8.18E-07 6.087159879 -0.086229084 SPFSVAVSPSLDLSK ddPTM_HeLa_A486_30min_R1 2 SPFSVAVSPSLDLSK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 260.81 1.46E-40 69738000 108919 104902 68885 38790 118375 109481 120095 118684 85059 139798 FALSE FALSE TRUE 101284.3406 96589.18347 95559.1168 90305.08034 103527.3037 95974.34734 90045.96076 91662.24405 92431.98261 104791.6709 0.966530448 0.92172577 0.911896108 0.861758187 0.987934469 0.915858546 0.859285476 0.874709252 0.882054669 1 16.67716453 -6.535052713 24.70865319 0.892714383 0.927435403 0.040353875 0.047792924 473.7044905 961434.924 0.017713682 0.013731788 2.92E-07 6.535052713 0.03472102 SPGALET(ph)PSAAGSQGNTASQGK ddPTM_HeLa_A485_30min_R1 1 SPGALETPSAAGSQGNTASQGK 22 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 S(0.031)PGALET(0.969)PSAAGSQGNTASQGK 301.74 5.78E-87 513700000 228960 217900 163410 252930 240240 226980 295410 282410 233970 371240 TRUE FALSE FALSE 279891.3621 243381.5095 223862.1591 266746.9254 216320.8621 238864.3218 232293.2402 213148.5047 280925.6329 278696.7002 1.004286602 0.873284504 0.803246536 0.957122654 0.776187382 0.857076247 0.833498352 0.764804551 1.0079977 1 18.0883364 -7.785507531 24.9920869 1.003999154 0.856964541 0.400722504 0.071055249 259.4985735 269452.6771 0.067101807 0.017362358 1.64E-08 7.785507531 -0.147034613 SPGALET(ph)PSAAGSQGNTASQGK ddPTM_HeLa_A486_30min_R1 2 SPGALETPSAAGSQGNTASQGK 22 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 S(0.215)PGALET(0.777)PS(0.008)AAGSQGNTASQGK;S(0.403)PGALET(0.587)PS(0.01)AAGSQGNTASQGK ; 334.3 5.22E-114 1196680000 435620 459970 264810 175986 419990 471320 526550 505990 379670 552770 TRUE FALSE FALSE 405085.2875 423520.302 367351.5239 409704.3018 367310.9379 413173.3304 394801.6207 390787.1227 412580.1013 414352.7941 0.977633778 1.022124885 0.886567025 0.988781318 0.886469075 0.99715348 0.952815153 0.943126554 0.995721779 1 18.66050013 -7.777188916 21.95046367 0.9978612 0.956597501 0.13371982 0.041766179 128.9181895 179651.886 0.037732413 0.009946851 1.67E-08 7.777188916 -0.041263699 SPGALETPS(ph)AAGSQGNTASQGK ddPTM_HeLa_A485_30min_R1 1 SPGALETPSAAGSQGNTASQGK 22 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 S(0.376)PGALET(0.221)PS(0.403)AAGSQGNTASQGK 323.87 5.27E-103 780940000 189890 171910 131960 219620 199840 170880 257910 217520 155370 271740 TRUE FALSE FALSE 232130.3754 192013.3791 180777.4953 231617.2845 179943.2279 179827.0126 202805.4216 164172.8789 186551.3339 204000.219 1.137892775 0.941241044 0.886163241 1.135377627 0.8820737 0.881504017 0.994143156 0.80476815 0.914466341 1 17.63821118 -5.843682352 24.99977282 0.905563373 1.009292206 0.26493769 0.089644942 40.40264074 12277.53656 0.027338672 0.030999148 1.43E-06 5.843682352 0.103728833 SPGDPAKPAS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 SPGDPAKPASSPR 13 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3;H7C3V8 C9JWC4 HJURP Holliday junction recognition protein 1 0 S(0.207)PGDPAKPAS(0.525)S(0.269)PR 47.639 0.029615 389130000 539210 525150 396590 195140 558530 557450 609090 595260 466740 647960 TRUE FALSE FALSE 501414.1635 483535.2014 550160.269 454295.7818 488473.9593 488677.4867 456689.2397 459732.2924 507197.399 485706.5985 1.032339616 0.995529406 1.132700834 0.935329648 1.005697598 1.006116631 0.940257433 0.946522641 1.044246466 1 18.88972556 -5.285098567 24.98378761 0.980546068 1.047723931 0.33481358 0.045530176 888.430501 938168.1286 0.012621638 0.018730103 5.19E-06 5.285098567 0.067177863 SPGNT(ph)SQPPAFFSK ddPTM_HeLa_A486_30min_R1 1 SPGNTSQPPAFFSK 14 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2;H7C184 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.047)PGNT(0.93)S(0.023)QPPAFFSK 221.78 4.64E-27 3357000000 612740 706520 493370 218940 683600 648060 719840 685610 564920 727900 TRUE FALSE FALSE 569790.0902 650532.7821 684416.0769 509703.3846 597856.5137 568108.9462 539728.4183 529511.5698 613887.7205 545629.1022 1.044280974 1.192261885 1.254361386 0.934157256 1.095719622 1.041199863 0.98918554 0.970460644 1.125100765 1 19.05756107 -5.261079682 24.99991269 1.023501532 1.16649746 0.447877628 0.071900968 28.85071193 2005152.71 0.019646242 0.031470527 5.48E-06 5.261079682 0.142995928 SPGS(ph)NSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_HeLa_A485_30min_R1 3 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 S(0.027)PGS(0.752)NS(0.221)KVPEIEVTVEGPNNNNPQTSAVR;S(0.079)PGS(0.461)NS(0.461)KVPEIEVTVEGPNNNNPQTSAVR;S(0.045)PGS(0.699)NS(0.256)KVPEIEVTVEGPNNNNPQTSAVR ;; 211.25 2.05E-29 12371200000 258911 467257 313103 220045 475182 556405 725396 915660 291995 321975 TRUE FALSE FALSE 316504.8587 521898.6416 428932.829 232065.5012 427871.2116 585537.5054 570409.2187 691092.9493 350595.7182 241712.558 1.309426624 2.15917057 1.774557485 0.960088723 1.770165419 2.422453803 2.359865881 2.859152023 1.450465466 1 17.8829329 -6.012334021 24.22011383 2.149302789 1.579607086 0.108791895 0.571209656 685.5659002 1346237.032 0.180066306 0.189423894 9.72E-07 6.012334021 -0.569695703 SPGS(ph)PPGPELPIETALDDR ddPTM_HeLa_A485_30min_R1 2 SPGSPPGPELPIETALDDR 19 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 SPGS(1)PPGPELPIETALDDR;S(0.027)PGS(0.973)PPGPELPIETALDDR ; 116.13 3.27E-05 127429000 16416.3 17026.3 19728.5 16516.4 20482.4 12502.8 19899.4 13864.7 14195.8 20544.2 TRUE FALSE FALSE 20068.0493 19017.37768 27026.89312 17418.64911 18443.10034 13157.42727 15647.73063 10464.36059 17044.76685 15422.90903 1.301184443 1.233060355 1.752386211 1.129401015 1.19582501 0.85310931 1.01457712 0.678494606 1.105159008 1 13.91278729 -5.863893875 1.773328165 0.91653162 1.400048315 0.557021471 0.181402306 0.247954087 1.605039937 0.064301628 0.07861219 1.37E-06 5.863893875 0.483516695 SPGS(ph)PPGPELPIETALDDR ddPTM_HeLa_A486_30min_R1 1 SPGSPPGPELPIETALDDR 19 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.057)PGS(0.943)PPGPELPIETALDDR 51.495 0.037647 102850000 10387 12558 9551.6 6400.7 11446 13001 13142 10354 9251 16314 TRUE FALSE FALSE 9658.924939 11562.85834 13250.23532 14901.15307 10010.33595 11397.0688 9853.732598 7996.620226 10052.88413 12228.86821 0.789846188 0.945537898 1.083520984 1.218522664 0.818582372 0.931980671 0.805776334 0.653913354 0.822061695 1 13.57800327 -6.280446722 1.836703145 0.800700618 1.001313648 0.206794654 0.138553948 0.482814665 3.209092249 0.05998304 0.054115263 5.24E-07 6.280446722 0.200613031 SPGS(ph)PPGPELPIETALDDRER ddPTM_HeLa_A485_30min_R1 2 SPGSPPGPELPIETALDDRER 21 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 SPGS(1)PPGPELPIETALDDRER;S(0.006)PGS(0.994)PPGPELPIETALDDRER ; 173.01 3.01E-14 175742000 37234 50953 57051 51136 93788 51012 65345 63381 65964 65500 TRUE FALSE FALSE 45516.57484 56911.51012 78156.53899 53929.4302 84450.13741 53682.90944 51383.50693 47836.71037 79202.36974 49172.05544 0.92565939 1.157395387 1.589450315 1.096749561 1.717441678 1.091736129 1.044973745 0.972843416 1.610719118 1 15.58555104 SPGS(ph)PPGPELPIETALDDRER ddPTM_HeLa_A486_30min_R1 2 SPGSPPGPELPIETALDDRER 21 1 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3;B1AP52 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.005)PGS(0.995)PPGPELPIETALDDRER;S(0.032)PGS(0.968)PPGPELPIETALDDRER ; 99.6 0.0002235 204723000 59885 69629 74831 29754 119060 77784 80885 105060 62566 66471 TRUE FALSE FALSE 55687.37075 64111.34446 103807.5672 69268.81568 104126.3846 68187.80093 60646.71749 81140.13144 67989.27126 49826.22895 1.117631656 1.286698709 2.083392009 1.390207871 2.089790594 1.368512175 1.217164509 1.628462221 1.364527734 1 15.60461777 -6.481911358 24.99796505 1.346042444 1.606088193 0.150035122 0.326412044 1098.24604 670141.5819 0.115906179 0.10220745 3.30E-07 6.481911358 0.260045749 SPGS(ph)PVCR ddPTM_HeLa_A485_30min_R1 3 SPGSPVCR 8 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.019)PGS(0.981)PVCR;S(0.002)PGS(0.998)PVCR;S(0.004)PGS(0.996)PVCR ;; 99.815 0.0022714 664830000 266326 340766 354826 291311 409209 352401 364559 411297 318113 370527 TRUE FALSE FALSE 325569.2999 380615.6194 486090.9029 307224.5823 368466.7151 370852.1714 286667.9915 310425.7659 381955.3612 278161.4379 1.170432905 1.36832633 1.747513626 1.10448301 1.324650598 1.333226396 1.030581354 1.115991376 1.373142748 1 18.0855629 -6.193153817 1.117553441 1.146772616 1.387856711 0.206858732 0.187832383 0.799619428 2.085213621 0.098203246 0.094468504 6.41E-07 6.193153817 0.241084095 SPGS(ph)PVCR ddPTM_HeLa_A486_30min_R1 4 SPGSPVCR 8 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.076)PGS(0.924)PVCR;S(0.015)PGS(0.985)PVCR;S(0.033)PGS(0.967)PVCR;S(0.022)PGS(0.978)PVCR ;;; 107.21 0.001354 685070000 515550 617550 515870 186541 662810 569310 563170 597850 511700 563550 TRUE FALSE FALSE 479412.6073 568613.0889 715628.6795 434276.8753 579674.1893 499074.3205 422258.9094 461732.606 556054.568 422433.4119 1.134883259 1.346041939 1.694062684 1.028036285 1.372226185 1.181427194 0.999586911 1.093030506 1.316312944 1 18.68836442 -6.11669808 1.319167054 1.109955561 1.348330963 0.21631801 0.183920489 0.674646145 2.404569231 0.083578463 0.085305119 7.64E-07 6.11669808 0.238375403 SPGS(ph)PVGEGTGSPPK ddPTM_HeLa_A485_30min_R1 8 SPGSPVGEGTGSPPK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;S(0.005)PGS(0.994)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK ;;;;;;; 305.43 6.36E-68 3419550000 1652119 1183826 1155268 2442569 1884354 1293602 1850288 1365883 1533952 3267112 TRUE FALSE FALSE 2019627.172 1322264.153 1582649.708 2576000.36 1696741.099 1361333 1454958.853 1030898.053 1841802.096 2452681.105 0.823436511 0.539109691 0.645273332 1.050279367 0.691790342 0.555038728 0.593211588 0.420314753 0.750934189 1 21.22592824 -8.018430595 24.41025018 1.000000015 0.662541093 0.275894828 0.163601421 1316.586457 1743742.056 0.166961751 0.043109339 9.58E-09 8.018430595 -0.337458923 SPGS(ph)PVGEGTGSPPK ddPTM_HeLa_A486_30min_R1 7 SPGSPVGEGTGSPPK 15 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK ;;;;;; 342.28 4.80E-91 4115290000 1695903 2101471 1171444 718884 1888508 2212274 2259403 2184418 1702543 2158805 TRUE FALSE FALSE 1577028.957 1934942.785 1625058.489 1673598.282 1651633.717 1939346.127 1694076.472 1687073.707 1850120.798 1618226.177 0.974541742 1.195718381 1.0042221 1.034217779 1.020644543 1.198439473 1.046872493 1.04254506 1.143301737 1 20.62598183 SPGS(ph)PVGEGTGSPPKWQIGEQEFEALMR ddPTM_HeLa_A485_30min_R1 3 SPGSPVGEGTGSPPKWQIGEQEFEALMR 28 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 S(0.007)PGS(0.993)PVGEGTGSPPKWQIGEQEFEALMR;S(0.044)PGS(0.955)PVGEGTGSPPKWQIGEQEFEALMR;S(0.002)PGS(0.998)PVGEGTGSPPKWQIGEQEFEALMR ;; 148.75 4.68E-09 235042000 66522 98344 65269 69624 104493 108647 126712 141552 85270 107854 TRUE FALSE FALSE 81319.5894 109844.4753 89414.71917 73427.38282 94089.31002 114335.5889 99638.94606 106836.1501 102382.9069 80967.98271 1.00434254 1.35664088 1.104321933 0.906869362 1.162055752 1.412108652 1.23059687 1.319486376 1.264486325 1 16.30506391 -6.009969466 24.93193785 1.266904582 1.102900762 0.190104618 0.144547335 733.1090848 1833383.781 0.045777863 0.048954811 9.77E-07 6.009969466 -0.164003821 SPGS(ph)PVGEGTGSPPKWQIGEQEFEALMR ddPTM_HeLa_A486_30min_R1 2 SPGSPVGEGTGSPPKWQIGEQEFEALMR 28 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 S(0.158)PGS(0.842)PVGEGTGSPPKWQIGEQEFEALMR;SPGS(0.994)PVGEGT(0.002)GS(0.003)PPKWQIGEQEFEALMR ; 200.64 1.04E-28 547681000 419519 396941 280004 131535 506207 321119 398554 442500 319830 439298 TRUE FALSE FALSE 390112.8845 365485.9495 388429.0476 306220.1274 442713.7979 281502.6027 298831.5737 341752.4097 347553.1219 329294.9214 1.18469147 1.109904604 1.179578008 0.929926663 1.344429473 0.854864695 0.907489166 1.037830794 1.055446347 1 18.32902074 -6.283147596 24.99987467 0.969513322 1.136944477 0.39527441 0.109866963 908.2430162 1045958.335 0.037968433 0.033512406 5.21E-07 6.283147596 0.167431155 SPGS(ph)SWQEYGPSDTCGSR ddPTM_HeLa_A485_30min_R1 1 SPGSSWQEYGPSDTCGSR 18 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.14)PGS(0.86)SWQEYGPSDTCGSR 297.7 1.01E-78 133710000 19401 25490 24310 17939 34088 23743 26236 34775 21658 26959 TRUE FALSE FALSE 23716.68552 28470.83377 33303.28062 18918.96215 30694.07903 24986.14677 20630.46427 26246.37672 26004.56194 20238.61744 1.171853047 1.40675784 1.645531406 0.934795185 1.516609478 1.234577749 1.019361344 1.296846328 1.284898142 1 14.30482312 -6.515087193 24.80815958 1.168150198 1.338245632 0.157049004 0.200498448 692.4393532 2204728.571 0.073087473 0.059267216 3.05E-07 6.515087193 0.170095434 SPGS(ph)TPTT(ph)PTSSQAPQK ddPTM_HeLa_A485_30min_R1 4 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 SPGS(1)TPTT(0.886)PT(0.113)S(0.001)SQAPQK;SPGS(0.992)T(0.008)PT(0.001)T(0.967)PT(0.029)S(0.002)SQAPQK;SPGS(1)TPT(0.002)T(0.99)PT(0.008)SSQAPQK;SPGS(0.964)T(0.036)PTT(0.968)PT(0.03)S(0.002)SQAPQK ;;; 327.42 5.41E-91 3494940000 2954970 2150000 2012550 3714110 3083710 2199350 3115120 2163220 2363690 4523020 TRUE FALSE FALSE 3612292.882 2401423.797 2757075.994 3917002.425 2776685.005 2314504.565 2449549.164 1632686.903 2838060.902 3395514.354 1.063842619 0.707234176 0.81197595 1.153581466 0.817750925 0.681635924 0.721407395 0.480836401 0.835826507 1 21.6951987 -6.000380735 24.99999292 0.714486056 0.918777821 0.209237794 0.168610443 20.2239116 1328108.655 0.05197345 0.058299054 9.99E-07 6.000380735 0.204291765 SPGS(ph)TPTT(ph)PTSSQAPQK ddPTM_HeLa_A486_30min_R1 3 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 SPGS(1)TPT(0.017)T(0.982)PT(0.001)SSQAPQK;SPGS(0.999)T(0.001)PT(0.002)T(0.779)PT(0.218)SSQAPQK;SPGS(1)TPT(0.001)T(0.965)PT(0.034)SSQAPQK ;; 377.43 1.25E-119 3267900000 2195060 2483210 1384990 677850 2000940 2346570 2447730 2453720 1929870 2312400 TRUE FALSE FALSE 2041197.629 2286431.396 1921295.219 1578069.057 1749963.447 2057074.052 1835282.065 1895061.52 2097152.685 1733359.989 1.177595908 1.319074751 1.108422504 0.910410455 1.009578771 1.186755241 1.058800293 1.093287911 1.209877174 1 20.72513988 -4.896370852 6.227179573 1.068538353 1.245969291 0.395074282 0.08833877 0.206886447 10.73605516 0.024056362 0.051146237 1.27E-05 4.896370852 0.177430938 SPGS(ph)TPTTPT(ph)SSQAPQK ddPTM_HeLa_A486_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 2 0 SPGS(0.999)T(0.001)PT(0.028)T(0.326)PT(0.612)S(0.033)S(0.002)QAPQK 287.46 7.96E-60 1375200000 448650 485620 281780 165540 424000 500050 556960 544060 401680 498380 TRUE FALSE FALSE 417201.9518 447137.7026 390892.7623 385385.4859 370817.9664 438358.9151 417602.7171 420189.4147 436497.9458 373582.4041 1.116760177 1.196891764 1.046336118 1.03159432 0.992600193 1.173392832 1.11783294 1.124756975 1.168411416 1 18.51106698 SPGS(ph)TPTTPTSSQAPQK ddPTM_HeLa_A485_30min_R1 3 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 S(0.001)PGS(0.987)T(0.012)PTTPTSSQAPQK;S(0.198)PGS(0.761)T(0.039)PT(0.002)TPTSSQAPQK;S(0.155)PGS(0.844)T(0.001)PTTPTSSQAPQK ;; 348.26 3.48E-105 594360000 337733 283022 241605 433490 387200 314780 394995 302456 336642 579930 TRUE FALSE FALSE 412860.5407 316118.9609 330984.7435 457170.461 348649.0085 331261.3941 310601.0914 228278.1918 404202.9615 435364.1238 0.948310892 0.726102459 0.76024809 1.050087584 0.800821633 0.760883536 0.713428311 0.524338546 0.928425057 1 18.731863 -5.99518229 24.99747295 0.754483225 0.861969164 0.051141038 0.147267669 324.8706546 1685622.996 0.045298274 0.051189955 1.01E-06 5.99518229 0.107485939 SPGS(ph)TPTTPTSSQAPQK ddPTM_HeLa_A486_30min_R1 2 SPGSTPTTPTSSQAPQK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 S(0.005)PGS(0.976)T(0.019)PTTPTSSQAPQK;S(0.142)PGS(0.854)T(0.004)PTTPTSSQAPQK ; 208.43 1.14E-24 735820000 397149 441885 310236 142905 437390 539290 472690 481310 444239 489720 TRUE FALSE FALSE 369310.906 406868.4233 430367.6876 332690.062 382528.4677 472757.8829 354417.9624 371726.2199 482745.9942 367090.9245 1.006047498 1.108358709 1.172373543 0.906287897 1.042053732 1.287849553 0.965477321 1.012627105 1.315058374 1 18.48577792 SPGSNS(ph)KVPEIEVTVEGPNNNNPQTSAVR ddPTM_HeLa_A486_30min_R1 1 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 0 S(0.077)PGS(0.386)NS(0.537)KVPEIEVTVEGPNNNNPQTSAVR 165.55 2.50E-14 4102900000 127020 110760 64886 39690 140980 83793 137130 143650 71928 146450 TRUE FALSE FALSE 118116.5539 101982.9742 90011.59691 92400.32582 123296.9738 73455.4716 102818.6236 110944.0309 78162.77695 109777.9668 1.075958659 0.928993105 0.819942285 0.841701924 1.123148638 0.669127638 0.936605283 1.010622023 0.712007876 1 16.744229 -4.302596769 3.647259599 0.889326535 1.089251151 0.153841918 0.130812482 0.44017932 10.59285283 0.031554478 0.221714691 4.98E-05 4.302596769 0.199924617 SPHRS(ph)SPSDTRPK ddPTM_HeLa_A486_30min_R1 1 SPHRSSPSDTRPK 13 2 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 1 0 S(0.124)PHRS(0.437)S(0.437)PS(0.001)DTRPK 45.14 0.030778 19265000 47477 34925 34730 2584.7 47479 31698 34060 33912 44096 15167 TRUE FALSE FALSE 44149.10747 32157.41581 48178.3861 6017.312224 41523.7411 27787.42304 25537.82775 26190.97789 47918.27678 11369.08448 3.88325969 2.828496513 4.237666295 0.529269726 3.652338161 2.444121432 2.246251912 2.303701581 4.214787644 1 13.47282846 SPHS(ph)PSPIATPPSQSSSCSDAPMLSTVHSAK ddPTM_HeLa_A485_30min_R1 3 SPHSPSPIATPPSQSSSCSDAPMLSTVHSAK 31 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.079)PHS(0.458)PS(0.458)PIAT(0.005)PPSQSSSCSDAPMLSTVHSAK;S(0.116)PHS(0.873)PS(0.011)PIATPPSQSSSCSDAPMLSTVHSAK;S(0.162)PHS(0.814)PS(0.024)PIATPPSQSSSCSDAPMLSTVHSAK ;; 177.73 8.50E-16 846980000 163648 234074 231416 115453 312218 238879 284358 334349 229983 197984 TRUE FALSE FALSE 200050.933 261446.9181 317026.4084 121759.905 281132.4797 251386.3351 223602.5903 252349.3835 276138.4786 148630.2324 1.345963939 1.759042651 2.132987369 0.819213582 1.891489202 1.691353979 1.504421992 1.697833472 1.857889031 1 17.18136807 -10.36626343 6.654859479 0.9999615 1.635203762 0.238584043 0.339422214 0.000187011 1.78E-05 0.316975316 0.076873174 4.30E-11 10.36626343 0.635242262 SPHS(ph)PSPIATPPSQSSSCSDAPMLSTVHSAK ddPTM_HeLa_A486_30min_R1 1 SPHSPSPIATPPSQSSSCSDAPMLSTVHSAK 31 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.15)PHS(0.767)PS(0.082)PIATPPSQSSSCSDAPMLSTVHSAK 181.44 5.50E-21 402190000 289740 309490 254200 18825 370250 249860 301950 307920 277490 191480 TRUE FALSE FALSE 269430.7222 284964.8853 352633.0477 43825.55136 323809.7926 219034.8136 226398.9163 237813.3378 301543.0566 143532.1617 1.877145297 1.985373048 2.456822524 0.305336106 2.25600861 1.526032988 1.577339278 1.656864462 2.100874488 1 17.13101452 -11.00821919 2.845856883 0.224273014 1.734975512 0.138590664 0.559268108 140089982.8 139631534.4 710040308.1 0.134992598 9.81E-12 11.00821919 1.510702499 SPHSGDVLYELLQHILK ddPTM_HeLa_A486_30min_R1 1 SPHSGDVLYELLQHILK 17 0 P41212 P41212 ETV6 Transcription factor ETV6 0 0 119.56 7.12E-06 1049400 4245.7 4529 2902.8 731.66 3563.8 3066.4 3725.2 2649.4 2963 3518 FALSE FALSE TRUE 3948.098355 4170.105546 4026.8419 1703.341456 3116.794973 2688.098745 2793.115559 2046.189456 3219.835226 2637.069902 1.49715347 1.581340541 1.527013712 0.645921997 1.181915948 1.019350584 1.05917388 0.775932961 1.220989714 1 11.3647201 -5.23170108 22.51123545 0.989426267 1.539787081 0.705745986 0.162427822 105.330157 79731.77166 0.041540153 0.071924472 5.87E-06 5.23170108 0.550360813 SPHVTGSGASAGTHK(ac)R ddPTM_HeLa_A486_30min_R1 1 SPHVTGSGASAGTHKR 16 1 P55198 P55198 MLLT6 Protein AF-17 0 1 SPHVTGSGASAGTHK(1)R 68.481 0.010876 3581900 1505.3 1150.5 2239.9 422.77 2046.4 882.46 834.58 1179.9 1855.2 560.2 FALSE TRUE FALSE 1399.786243 1059.33019 3107.249267 984.2299256 1789.72143 773.5910574 625.7592567 911.262527 2016.01023 419.9222737 3.333441284 2.522681592 7.399581925 2.343838342 4.262030243 1.842224397 1.490178769 2.170074283 4.800912826 1 8.713978504 -6.257880201 24.84396262 2.285651476 3.99171238 0.220892055 1.606726808 469.595492 3277899.989 0.538878225 0.518505148 5.52E-07 6.257880201 1.706060904 SPITS(ph)SPPKWMAEIERDDIDMLK ddPTM_HeLa_A485_30min_R1 1 SPITSSPPKWMAEIERDDIDMLK 23 2 G3V5T8;Q52LA3 G3V5T8 LIN52 Protein lin-52 homolog 1 0 S(0.013)PIT(0.074)S(0.457)S(0.457)PPKWMAEIERDDIDMLK 80.359 0.0020336 91463000 73593 61976 38183 115860 94555 108060 163200 166850 59621 182630 TRUE FALSE FALSE 89963.50896 69223.55408 52308.48063 122189.1384 85140.7722 113717.8545 128330.9868 125929.7759 71586.38782 137103.7021 0.65617126 0.504899234 0.381524932 0.891216915 0.620995428 0.829429496 0.936014016 0.918500186 0.52213315 1 17.064908 -5.267498949 24.98738727 0.810825283 0.513268548 0.458339601 0.150694485 431.3438227 1778700.188 0.041849889 0.063907887 5.40E-06 5.267498949 -0.297556735 SPITS(ph)SPPKWMAEIERDDIDMLK ddPTM_HeLa_A486_30min_R1 1 SPITSSPPKWMAEIERDDIDMLK 23 2 G3V5T8;Q52LA3 G3V5T8 LIN52 Protein lin-52 homolog 1 0 SPIT(0.102)S(0.506)S(0.391)PPKWMAEIERDDIDMLK 82.65 0.0016826 79224000 75139 67826 39763 65511 83313 113840 156390 144980 71693 175450 TRUE FALSE FALSE 69872.14412 62451.22074 55160.29849 152512.9187 72863.10668 99795.57824 117259.5679 111971.2189 77907.40696 131516.178 0.531281742 0.474855806 0.419418351 1.159651391 0.554023906 0.758808382 0.89159805 0.851387415 0.592378886 1 17.00488075 -5.215319654 24.99758837 0.811640343 0.475152167 0.475970901 0.16972159 375.7377444 203654.9486 0.044157399 0.076482559 6.09E-06 5.215319654 -0.336488175 SPITSS(ph)PPKWMAEIERDDIDMLK ddPTM_HeLa_A485_30min_R1 1 SPITSSPPKWMAEIERDDIDMLK 23 2 G3V5T8;Q52LA3 G3V5T8 LIN52 Protein lin-52 homolog 1 0 SPIT(0.024)S(0.172)S(0.804)PPKWMAEIERDDIDMLK 170.1 7.22E-15 86538000 62780 45370 34367 98341 80352 78710 149640 142120 54548 166540 TRUE FALSE FALSE 76745.19441 50675.62683 47080.78343 103713.1198 72351.87275 82831.13389 117668.1916 107264.8472 65495.28326 125024.6429 0.613840541 0.405325107 0.376572029 0.82954142 0.578700895 0.66251846 0.941159989 0.857949638 0.523858991 1 16.93185296 -5.702706969 0.908943485 0.807019389 0.462113567 0.38620719 0.162735299 0.650365868 1.14755179 0.079554647 0.138356057 1.98E-06 5.702706969 -0.344905821 SPLDPMT(ph)SPGSGLILQANFVHSQR ddPTM_HeLa_A485_30min_R1 1 SPLDPMTSPGSGLILQANFVHSQR 24 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(0.008)PLDPMT(0.825)S(0.159)PGS(0.008)GLILQANFVHSQR 61.112 0.026537 102400000 31566 38488 34981 32104 47257 41912 45530 54404 37285 45804 TRUE FALSE FALSE 38587.7478 42988.8368 47921.92758 33857.76023 42551.92715 44106.44751 35802.14355 41061.3337 44767.7575 34385.90576 1.122196637 1.250187711 1.393650291 0.984640639 1.237481643 1.282689711 1.041186578 1.194132677 1.301921718 1 15.06952973 -10.42345022 3.116408138 0.996806784 1.20024212 0.210362701 0.116762793 21812832.79 25868373.13 609500.7261 0.028312993 3.77E-11 10.42345022 0.203435335 SPLDPMT(ph)SPGSGLILQANFVHSQR ddPTM_HeLa_A486_30min_R1 1 SPLDPMTSPGSGLILQANFVHSQR 24 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 SPLDPMT(0.538)S(0.457)PGS(0.005)GLILQANFVHSQR 128.3 1.16E-05 259940000 214810 231470 198030 79179 259180 206920 216010 210610 185150 231620 TRUE FALSE FALSE 199752.9283 213127.4742 274712.5194 184332.7135 226671.2276 181392.3142 161962.0133 162658.7006 201198.9511 173620.8444 1.150512365 1.227545431 1.582255405 1.061696907 1.305553077 1.044761157 0.932848897 0.936861591 1.158840989 1 17.40558064 -6.333890435 4.562107266 1.000754453 1.269955018 0.449642449 0.138810453 0.207752426 8.264463302 0.050152787 0.044330763 4.64E-07 6.333890435 0.269200565 SPLDPMTS(ph)PGSGLILQANFVHSQR ddPTM_HeLa_A485_30min_R1 2 SPLDPMTSPGSGLILQANFVHSQR 24 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 SPLDPMT(0.035)S(0.963)PGS(0.001)GLILQANFVHSQR;S(0.005)PLDPMT(0.413)S(0.582)PGSGLILQANFVHSQR ; 180.65 1.63E-20 3987300000 624780 892080 879830 590370 946450 843660 869010 976140 703710 782970 TRUE FALSE FALSE 763760.1555 996400.9959 1205315.73 622620.4182 852218.1148 887832.7331 683338.9143 736740.1345 844938.1422 587789.9885 1.299375917 1.695164966 2.050589077 1.059256589 1.449868374 1.510459093 1.162556232 1.253407082 1.437483045 1 19.16494126 -6.915973765 0.23839704 0.960265342 1.74189024 0.270720458 0.254753739 3.454704283 0.690205553 0.687815403 1.018392863 1.21E-07 6.915973765 0.781624898 SPLDPMTS(ph)PGSGLILQANFVHSQR ddPTM_HeLa_A486_30min_R1 1 SPLDPMTSPGSGLILQANFVHSQR 24 0 Q08499-10;A0A087WSZ7;Q08499-11;Q08499;Q08499-2;Q08499-9;A0A1B0GW84;A0A1W2PQN6;Q08499-6;Q08499-7;Q08499-12 Q08499-10;Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(0.001)PLDPMT(0.174)S(0.81)PGS(0.015)GLILQANFVHSQR 100.95 0.0007072 2618000000 676960 713250 586320 210940 836430 616390 727190 670940 575110 782090 TRUE FALSE FALSE 629508.5998 656729.4724 813358.8062 491078.9803 731517.15 540346.0688 545239.3706 518181.6085 624960.9979 586249.5734 1.073789438 1.120221663 1.387393429 0.837661983 1.247791356 0.921699722 0.930046511 0.883892513 1.066032328 1 19.16115544 -6.280261724 24.80604007 0.951184502 1.130325042 0.281098467 0.137931098 972.7313349 1281962.279 0.047096239 0.041609394 5.24E-07 6.280261724 0.17914054 SPLELGEKLS(ph)PLPGGPGAGDPR ddPTM_HeLa_A485_30min_R1 2 SPLELGEKLSPLPGGPGAGDPR 22 1 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 0 S(0.002)PLELGEKLS(0.998)PLPGGPGAGDPR;SPLELGEKLS(1)PLPGGPGAGDPR ; 92.412 0.00067388 496410000 687530 678140 556430 889720 813760 775920 1083500 972030 586430 1128570 TRUE FALSE FALSE 840468.6765 757442.574 762276.612 938323.1507 732739.1971 816545.9714 852001.3736 733638.1184 704121.1219 847238.2688 0.992009813 0.894013646 0.899719288 1.107507988 0.864856114 0.963773712 1.005621919 0.865917116 0.831078042 1 19.69240823 -7.275291699 24.7943105 0.88637318 0.958168393 0.114613147 0.076391874 1407.070497 2518505.112 0.040347309 0.019548638 5.31E-08 7.275291699 0.071795213 SPLELGEKLS(ph)PLPGGPGAGDPR ddPTM_HeLa_A486_30min_R1 2 SPLELGEKLSPLPGGPGAGDPR 22 1 Q15742;Q15742-2;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 1 0 S(0.001)PLELGEKLS(0.999)PLPGGPGAGDPR;SPLELGEKLS(1)PLPGGPGAGDPR ; 68.074 0.003739 477720000 547830 533200 318760 231207 518090 556710 651790 647330 452620 827020 TRUE FALSE FALSE 509429.946 490947.2901 442192.4087 538261.5806 453106.3212 488028.7804 488705.2481 499947.0901 491853.466 619928.809 0.821755561 0.791941402 0.713295466 0.868263537 0.730900572 0.787233588 0.78832479 0.806458875 0.793403144 1 19.24174302 -9.752218165 0.645542951 1.033689568 0.784591693 0.706314822 0.040858335 10.5235602 2.842084525 0.803658228 0.01495004 1.77E-10 9.752218165 -0.249097874 SPLLAGGS(ph)PPQPVVPAHK ddPTM_HeLa_A485_30min_R1 3 SPLLAGGSPPQPVVPAHK 18 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 S(0.002)PLLAGGS(0.998)PPQPVVPAHK;SPLLAGGS(1)PPQPVVPAHK;SPLLAGGS(1)PPQPVVPAHK ;; 139.83 9.32E-07 4646320000 3629260 3732920 3425930 4490340 4751650 4394060 5725540 5488460 3878470 5939400 TRUE FALSE FALSE 4436576.366 4169452.522 4693324.072 4735635.904 4278559.042 4624126.187 4502231.606 4142406.579 4656843.354 4458816.887 0.995012013 0.935102882 1.052594038 1.062083513 0.959572719 1.0370747 1.009736825 0.92903716 1.044412334 1 22.08822952 -4.751432733 24.987398 1.010037102 0.965057464 0.166087687 0.041756015 380.4160482 949910.3711 0.010686868 0.027594843 1.77E-05 4.751432733 -0.044979638 SPLLAGGS(ph)PPQPVVPAHK ddPTM_HeLa_A486_30min_R1 3 SPLLAGGSPPQPVVPAHK 18 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SPLLAGGS(1)PPQPVVPAHK;SPLLAGGS(1)PPQPVVPAHK;S(0.013)PLLAGGS(0.987)PPQPVVPAHK ;; 154.84 1.25E-08 5867360000 4508770 5127660 3473600 1691470 5024550 5261280 5867700 5694250 4654740 5954570 TRUE FALSE FALSE 4192728.506 4721325.547 4818670.946 3937827.642 4394324.087 4612196.766 4399539.398 4397793.58 5058216.611 4463506.914 0.939335054 1.05776145 1.079570624 0.882227297 0.984500343 1.033312338 0.985668776 0.985277645 1.133238216 1 22.08974623 -7.723947628 24.999498 1.066619486 0.995533349 0.185075147 0.061285238 246.0399199 164059.7741 0.041177118 0.015562581 1.89E-08 7.723947628 -0.071086137 SPLLAGGS(ph)PPQPVVPAHKDK ddPTM_HeLa_A485_30min_R1 2 SPLLAGGSPPQPVVPAHKDK 20 1 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SPLLAGGS(1)PPQPVVPAHKDK;SPLLAGGS(1)PPQPVVPAHKDK ; 118.05 6.56E-06 1230160000 616950 1010560 476510 630770 1184840 1625420 2227250 3897000 646350 883130 TRUE FALSE FALSE 754188.399 1128736.201 652790.8782 665227.3679 1066873.169 1710524.478 1751379.843 2941254.64 776066.5163 662981.9438 1.137570044 1.702514242 0.984628442 1.003386856 1.60920396 2.580046853 2.641670499 4.436402329 1.170569611 1 19.33861005 -6.164133168 3.242291842 2.606851578 1.231283146 0.246361825 0.913831298 0.301824162 6.059337301 0.309949617 0.307254125 6.85E-07 6.164133168 -1.375568432 SPLPAGPSSCT(ph)SPR ddPTM_HeLa_A486_30min_R1 1 SPLPAGPSSCTSPR 14 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 SPLPAGPS(0.127)S(0.066)CT(0.403)S(0.403)PR 83.499 0.014642 337950000 221020 228170 179090 65444 222240 192560 206020 210820 144030 222030 TRUE FALSE FALSE 205527.6393 210088.9782 248438.4442 152356.9394 194364.5869 168803.905 154471.6169 162820.8882 156514.6364 166432.2428 1.23490278 1.262309362 1.492730255 0.915429227 1.167830125 1.014250016 0.928135164 0.978301352 0.940410546 1 17.34457543 -5.271065868 24.99996143 0.996732741 1.323213659 0.738841956 0.092012883 338.9689636 880300.8415 0.02639057 0.039706226 5.36E-06 5.271065868 0.326480918 SPLPAGPSSCTS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SPLPAGPSSCTSPR 14 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 SPLPAGPS(0.001)S(0.008)CT(0.469)S(0.522)PR 116.98 0.00014663 441220000 184710 236830 208210 205280 273650 193550 251590 263670 195160 235560 TRUE FALSE FALSE 225798.1023 264525.2084 285235.5433 216493.9266 246404.4452 203683.9787 197835.7412 199004.5191 234326.8219 176839.2272 1.276855288 1.495851416 1.612965335 1.224241533 1.393381147 1.151803149 1.11873222 1.125341488 1.325083951 1 17.43207881 -5.980378049 1.358843542 1.146002351 1.446761831 0.505888817 0.125675577 0.350020657 1.337821706 0.052450026 0.060159218 1.05E-06 5.980378049 0.30075948 SPLPAGPSSCTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SPLPAGPSSCTSPR 14 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 SPLPAGPS(0.005)S(0.004)CT(0.268)S(0.723)PR 99.941 0.00036415 0 164860 189540 151010 55160 183740 164150 176200 181550 135840 159960 TRUE FALSE FALSE 153304.1653 174520.1601 209485.1162 128415.2676 160693.6159 143898.842 132112.8963 140215.0282 147614.7206 119904.9748 1.278547162 1.455487234 1.747092783 1.07097531 1.340174718 1.200107353 1.101813303 1.169384576 1.231097549 1 16.87153199 -5.280054305 24.99425164 1.17300576 1.489886909 0.55230087 0.137651755 608.0013521 816361.6793 0.038635328 0.057423345 5.25E-06 5.280054305 0.316881149 SPLPAGPSSCTS(ph)PRS(ph)PLPAPPRPFLYR ddPTM_HeLa_A486_30min_R1 2 SPLPAGPSSCTSPRSPLPAPPRPFLYR 27 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 2 0 SPLPAGPS(0.116)S(0.116)CT(0.104)S(0.665)PRS(1)PLPAPPRPFLYR;S(0.003)PLPAGPS(0.083)S(0.083)CT(0.401)S(0.435)PRS(0.993)PLPAPPRPFLY(0.001)R ; 105.98 0.00033185 769060000 167769 175506 118425 80810 168748 174032 233947 227789 148872 222446 TRUE FALSE FALSE 156009.2595 161598.2654 164282.3315 188129.7639 147582.0523 152561.7013 175410.9862 175926.4173 161776.3448 166744.0737 0.935621015 0.969139483 0.985236404 1.128254574 0.885081245 0.914945268 1.051977334 1.055068485 0.970207464 1 17.34727596 -6.786223721 24.99946331 1.023902352 0.973752035 0.119876315 0.064817383 552.8655037 557658.7379 0.028501175 0.019224234 1.64E-07 6.786223721 -0.050150317 SPLPNT(ph)SPQGTNHLIEDFASLWHSGR ddPTM_HeLa_A485_30min_R1 1 SPLPNTSPQGTNHLIEDFASLWHSGR 26 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 SPLPNT(0.669)S(0.297)PQGT(0.034)NHLIEDFASLWHSGR 169.39 8.78E-14 170920000 42618 60250 68763 33408 59020 51824 66822 66668 53192 56572 TRUE FALSE FALSE 52098.22707 67295.71339 94201.29517 35232.99445 53143.76157 54537.4245 52544.93381 50317.56847 63867.14649 42469.64153 1.226716902 1.584560429 2.218085479 0.829604234 1.251335299 1.284150808 1.237235162 1.184789102 1.5038306 1 15.37414431 -5.275521092 24.99865616 1.201264439 1.667264947 0.391883799 0.28025947 825.0273317 1464633.705 0.078971709 0.117771944 5.30E-06 5.275521092 0.466000509 SPLPNT(ph)SPQGTNHLIEDFASLWHSGR ddPTM_HeLa_A486_30min_R1 1 SPLPNTSPQGTNHLIEDFASLWHSGR 26 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.002)PLPNT(0.498)S(0.498)PQGT(0.002)NHLIEDFASLWHSGR 111.79 0.00046646 118600000 38496 43110 38848 18645 61165 39259 46871 50507 41296 40430 TRUE FALSE FALSE 35797.62919 39693.8066 53890.98599 43406.50227 53493.11536 34415.62374 35143.38005 39007.65866 44875.57053 30306.06484 1.181203478 1.309764458 1.778224466 1.432271147 1.76509605 1.135601864 1.159615418 1.287123843 1.480745546 1 14.88731891 -6.289201971 24.97278048 1.227249944 1.495552226 0.316834847 0.205512899 987.7807932 888517.294 0.074278677 0.065521677 5.14E-07 6.289201971 0.268302281 SPLPNTS(ph)PQGTNHLIEDFASLWHSGR ddPTM_HeLa_A485_30min_R1 1 SPLPNTSPQGTNHLIEDFASLWHSGR 26 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.001)PLPNT(0.225)S(0.774)PQGTNHLIEDFASLWHSGR 104.31 0.00042516 571760000 51598 79643 78953 41174 78800 68833 82541 89210 67064 63429 TRUE FALSE FALSE 63075.79709 88956.55605 108161.0002 43423.23136 70954.39532 72436.98944 64905.44105 67331.10762 80523.12965 47617.31762 1.324639863 1.868155547 2.271463526 0.911920989 1.490096437 1.521232045 1.363063782 1.414004631 1.691047158 1 15.53919873 -12.01409351 0.108948094 9.24E-10 1.888964476 0.179757965 0.341090218 175.0271113 2.029489216 48.50841104 5.285114938 9.68E-13 12.01409351 1.888964475 SPLPNTS(ph)PQGTNHLIEDFASLWHSGR ddPTM_HeLa_A486_30min_R1 1 SPLPNTSPQGTNHLIEDFASLWHSGR 26 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 SPLPNT(0.212)S(0.788)PQGTNHLIEDFASLWHSGR 123.19 7.19E-06 349130000 126450 129930 122420 12658 142950 99548 105430 114110 104100 97558 TRUE FALSE FALSE 117586.508 119633.8736 169824.3025 29468.4637 125019.878 87266.77989 79050.29888 88129.644 113123.4718 73128.8418 1.607936145 1.635932837 2.322261618 0.402966367 1.709583729 1.193329167 1.080972937 1.205128398 1.546906378 1 16.15815289 -5.243815 24.99863538 1.191903067 1.833432383 0.417655105 0.373438109 845.7023349 1199552.905 0.097233919 0.167940134 5.70E-06 5.243815 0.641529316 SPLS(ph)PTETFSWPDVR ddPTM_HeLa_A485_30min_R1 2 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.002)PLS(0.997)PT(0.001)ETFSWPDVR;S(0.004)PLS(0.996)PTETFSWPDVR ; 147.35 6.99E-08 193109000 56036 81578 86375 70339 111470 83877 106914 123173 77967 104560 TRUE FALSE FALSE 68501.01488 91117.83747 118328.7069 74181.44146 100371.6554 88268.67002 84070.95049 92964.62862 93614.26174 78495.11628 0.872678685 1.160809 1.507465846 0.945045309 1.278699366 1.124511615 1.071034154 1.184336466 1.192612562 1 16.26031528 SPLS(ph)PTETFSWPDVR ddPTM_HeLa_A486_30min_R1 2 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SPLS(0.992)PT(0.008)ETFSWPDVR;SPLS(0.991)PT(0.009)ETFSWPDVR ; 228.03 6.45E-34 114064000 49524 45124 43083 21344.9 67003 48736 48598 49255 40675 43418 TRUE FALSE FALSE 46052.62334 41548.2099 59765.8914 49692.00591 58598.85896 42723.44783 36438.26638 38040.71173 44200.74175 32545.8502 1.415007538 1.276605455 1.836359814 1.526830782 1.800501711 1.312715679 1.119597926 1.168834475 1.35810684 1 14.99018598 -6.482435828 6.720255002 1.180478062 1.567126582 0.552862539 0.174415727 0.177883457 23.00470832 0.063995562 0.055188957 3.29E-07 6.482435828 0.38664852 SPLVAAMQHFLPVLK ddPTM_HeLa_A486_30min_R1 3 SPLVAAMQHFLPVLK 15 0 O95373;E9PLB2 O95373 IPO7 Importin-7 0 0 ;; ;; 120.3 3.84E-05 49238400 94443.1 94104.5 63025.4 29425.9 93735.5 93229.1 105402.1 99332.1 86705.8 113224.4 FALSE FALSE TRUE 87823.12639 86647.3167 87430.52276 68504.9823 81978.31954 81727.44153 79029.37975 76716.34923 94221.52856 84872.27327 1.034768164 1.020914291 1.030142347 0.807153852 0.965902248 0.9629463 0.931156628 0.903903551 1.110156768 1 16.3730057 -10.30978325 19.38439518 0.999968859 0.968330963 0.004793074 0.079158001 0 0 0.077080404 0.018694744 4.90E-11 10.30978325 -0.031637896 SPMFPALGEAS(ph)SDDDLFQSAKPKPAK ddPTM_HeLa_A485_30min_R1 1 SPMFPALGEASSDDDLFQSAKPKPAK 26 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 SPMFPALGEAS(0.546)S(0.454)DDDLFQSAKPKPAK 188.97 9.74E-21 780400000 295220 152400 111490 415050 264930 244320 407480 356130 210740 578270 TRUE FALSE FALSE 360890.6705 170221.8543 152734.7905 437723.1305 238552.639 257112.2174 320418.5692 268788.5591 253033.585 434117.9313 0.831319428 0.392109706 0.351827878 1.008304654 0.549511139 0.592263528 0.738091072 0.619160232 0.58286831 1 18.72772749 -14 0.372967255 6.027898177 0.615703908 0.262822946 0.184763477 777.2823212 5.969636155 3152.764223 0.129655003 1.00E-14 14 -5.412194269 SPMFPALGEAS(ph)SDDDLFQSAKPKPAKK ddPTM_HeLa_A485_30min_R1 2 SPMFPALGEASSDDDLFQSAKPKPAKK 27 3 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 SPMFPALGEAS(0.5)S(0.5)DDDLFQSAKPKPAKK;SPMFPALGEAS(0.534)S(0.466)DDDLFQSAKPKPAKK ; 201.39 2.60E-28 2454400000 1685190 1027370 521928 2340000 1556870 1856650 3290730 3232480 1176610 3217690 TRUE FALSE FALSE 2060054.702 1147511.985 715010.8864 2467828.275 1401862.556 1953861.323 2587638.653 2439709.212 1412744.834 2415579.1 0.852820221 0.475046329 0.295999782 1.021630082 0.580342228 0.808858349 1.071229111 1.009989369 0.584847267 1 21.20393767 -5.85206644 1.14379265 0.905857837 0.572495054 0.234916134 0.223833024 0.680112208 1.890739717 0.099314824 0.133558411 1.41E-06 5.85206644 -0.333362783 SPMFPALGEAS(ph)SDDDLFQSAKPKPAKK ddPTM_HeLa_A486_30min_R1 1 SPMFPALGEASSDDDLFQSAKPKPAKK 27 3 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 SPMFPALGEAS(0.5)S(0.5)DDDLFQSAKPKPAKK 159.51 1.62E-10 637740000 1445500 1005800 243670 673370 883000 1263200 1730700 1572300 641660 1994000 TRUE FALSE FALSE 1344177.915 926096.7449 338025.5497 1567639.39 772245.9064 1107359.227 1297660.555 1214321.613 697279.6054 1494689.421 0.899302488 0.619591423 0.226151028 1.048806105 0.516659779 0.740862424 0.868180731 0.812424037 0.466504677 1 20.51141431 -5.937578343 1.166682813 0.766301953 0.634782257 0.039983128 0.241829844 1.782498099 5.130582212 0.108065698 0.132426623 1.15E-06 5.937578343 -0.131519696 SPMFPALGEASS(ph)DDDLFQSAKPKPAK ddPTM_HeLa_A486_30min_R1 2 SPMFPALGEASSDDDLFQSAKPKPAK 26 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 SPMFPALGEAS(0.163)S(0.837)DDDLFQSAKPKPAK;SPMFPALGEAS(0.26)S(0.74)DDDLFQSAKPKPAK ; 291.07 2.78E-90 1719800000 1318860 1184260 440610 625180 953580 1531920 1871710 1713330 971190 1902140 TRUE FALSE FALSE 1226414.725 1090414.925 611225.9919 1455450.635 833973.1046 1342927.286 1403388.361 1323242.161 1055373.531 1425831.763 0.860139854 0.764757072 0.428680303 1.020773048 0.58490288 0.941855358 0.984259432 0.928049294 0.740180966 1 20.44337233 -6.290422356 24.37163423 0.918459028 0.732887195 0.253163981 0.160601824 767.2668529 645187.9382 0.055164702 0.048659951 5.12E-07 6.290422356 -0.185571833 SPMFPALGEASS(ph)DDDLFQSAKPKPAKK ddPTM_HeLa_A486_30min_R1 1 SPMFPALGEASSDDDLFQSAKPKPAKK 27 3 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21D;FAM21A WASH complex subunit FAM21C;Putative WASH complex subunit FAM21;WASH complex subunit FAM21A 1 0 SPMFPALGEAS(0.102)S(0.898)DDDLFQSAKPKPAKK 180.6 4.10E-20 521340000 571900 390130 155850 283730 377230 569240 718710 684810 335510 935780 TRUE FALSE FALSE 531812.7633 359214.678 216199.2938 660537.7789 329914.2959 499012.9564 538881.1563 528893.7123 364592.2769 701454.5971 0.758157072 0.512099685 0.308215663 0.941668615 0.470328796 0.711397371 0.768233837 0.753995646 0.519766038 1 19.4199902 -14 0.16922641 2.385327408 0.55299448 0.269191723 0.17664281 175.5541899 1.651774525 81.79889312 0.637974293 1.00E-14 14 -1.832332928 SPPAS(ph)PESWK ddPTM_HeLa_A485_30min_R1 3 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 SPPAS(1)PESWK;SPPAS(1)PESWK;SPPAS(0.997)PES(0.003)WK ;; 100.31 0.0016534 1062730000 1124730 1197170 890920 1236070 1214120 1045940 1376030 1304800 757840 1320860 TRUE FALSE FALSE 1374922.308 1337168.618 1220508.382 1303593.374 1093237.95 1100703.801 1082029.949 984795.7542 909931.5367 991593.9106 1.386578007 1.348504265 1.23085506 1.314644392 1.102505711 1.110034853 1.091202697 0.993144213 0.917645345 1 19.91938989 -5.890595626 0.536561337 0.952063928 1.409851725 0.897043158 0.04944073 0.319718794 0.190869252 0.039930273 0.072564094 1.29E-06 5.890595626 0.457787797 SPPAS(ph)PESWK ddPTM_HeLa_A486_30min_R1 3 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 S(0.003)PPAS(0.997)PESWK;S(0.001)PPAS(0.999)PESWK;S(0.001)PPAS(0.999)PESWK ;; 109.72 0.00076249 881330000 3564500 3099660 1738410 1159750 2912790 2813090 3421430 3142240 2181520 3875900 TRUE FALSE FALSE 3314646.957 2854031.653 2411568.908 2699956.611 2547440.718 2466039.557 2565352.026 2426820.547 2370615.91 2905349.412 1.140877219 0.982336803 0.830044365 0.929305301 0.876810447 0.848792764 0.882975388 0.835293867 0.815948643 1 21.47028025 -4.408567 2.609737963 0.87254005 1.157769862 0.705134895 0.052430527 0.177612112 1.90101381 0.012999086 0.09466875 3.90E-05 4.408567 0.285229812 SPPEAKS(ph)PEKEEAK ddPTM_HeLa_A486_30min_R1 2 SPPEAKSPEKEEAK 14 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 S(0.001)PPEAKS(0.999)PEKEEAK;SPPEAKS(1)PEKEEAK ; 109.28 0.00013106 276860000 332160 268480 69037 659450 246820 521170 937510 815890 183427 1196970 TRUE FALSE FALSE 308877.2993 247204.667 95769.97527 1535232.927 215861.5341 456873.3443 702935.082 630129.6578 199326.6 897240.921 0.344252354 0.275516488 0.106738305 1.711059862 0.240583693 0.509198069 0.78344073 0.702297056 0.222155048 1 19.77513589 SPPGS(ph)GASTPVGPWDQAVQR ddPTM_HeLa_A485_30min_R1 2 SPPGSGASTPVGPWDQAVQR 20 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 S(0.146)PPGS(0.845)GAS(0.009)TPVGPWDQAVQR;S(0.121)PPGS(0.877)GAS(0.002)T(0.001)PVGPWDQAVQR ; 176.87 2.66E-14 794450000 92697 115932 128934 109324 197750 121782 138697 144749 128921 185083 TRUE FALSE FALSE 113317.1278 129489.2389 176632.052 115296.0933 178061.3157 128158.3172 109063.2529 109249.0808 154794.2622 138945.2143 0.815552579 0.931944577 1.271235234 0.829795354 1.281521761 0.922365825 0.784937095 0.786274514 1.114066886 1 17.08415662 -6.497803252 24.83393347 0.896386583 1.031350559 0.07599323 0.1731679 1516.188281 1501585.086 0.060148145 0.052809589 3.18E-07 6.497803252 0.134963976 SPPGS(ph)GASTPVGPWDQAVQR ddPTM_HeLa_A486_30min_R1 1 SPPGSGASTPVGPWDQAVQR 20 0 C9JUG3;Q8TE77-4;Q8TE77;Q8TE77-2 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 S(0.095)PPGS(0.903)GAS(0.002)TPVGPWDQAVQR 75.239 0.0035892 213460000 47899 75271 94983 17618 123790 60052 61757 70178 68413 46318 TRUE FALSE FALSE 44541.52745 69306.25183 131762.9613 41015.59436 108263.1039 52643.3948 46304.7454 54200.00137 74343.09392 34719.67132 1.282890239 1.996166703 3.795052094 1.181335906 3.118206475 1.516241162 1.333674647 1.561074725 2.141238413 1 15.08346567 SPPLIGSESAYESFLSADDKAS(ph)GR ddPTM_HeLa_A485_30min_R1 3 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPPLIGS(0.001)ES(0.001)AYES(0.007)FLS(0.02)ADDKAS(0.972)GR;SPPLIGSESAYESFLS(0.007)ADDKAS(0.993)GR;SPPLIGSESAYESFLSADDKAS(1)GR ;; 138.09 5.72E-07 263495000 125714 117981 86835.8 175232 161859 149418 186406 191206 111718 253515 TRUE FALSE FALSE 153678.6456 131777.8517 118959.976 184804.4804 145743.7496 157241.2954 146578.8353 144312.4287 134138.7779 190318.3761 0.807481909 0.692407398 0.62505775 0.971028044 0.765789161 0.82620133 0.770176997 0.758268495 0.704812539 1 17.53805534 -11.19872856 2.451287373 1.706815669 0.769782354 0.385879808 0.087410542 4222812.23 1435181.495 16488700.31 0.023671105 6.33E-12 11.19872856 -0.937033315 SPPLIGSESAYESFLSADDKAS(ph)GR ddPTM_HeLa_A486_30min_R1 1 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPPLIGSESAYES(0.002)FLS(0.13)ADDKAS(0.867)GR 66.027 0.0060804 30899000 39240 54493 29484 23805 54447 46796 70835 64754 37779 65660 TRUE FALSE FALSE 36489.47864 50174.77622 40900.99441 55419.24304 47617.74956 41022.78531 53111.33378 50010.92777 41053.71414 49218.30863 0.741380183 1.019433167 0.831011783 1.125988369 0.967480413 0.833486287 1.079097093 1.016104152 0.834114688 1 15.58690746 -4.253245083 24.53448836 0.967916124 0.741380036 0.319190406 0.099030656 955.9717289 2862184.9 0.023812975 0.255888103 5.58E-05 4.253245083 -0.226536089 SPPLLES(ph)PDATR ddPTM_HeLa_A485_30min_R1 1 SPPLLESPDATR 12 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 SPPLLES(1)PDATR 104.9 0.00058193 116190000 112800 149490 123250 111960 127940 133990 160650 142710 129750 142240 TRUE FALSE FALSE 137891.9708 166971.5551 168845.3039 118076.0913 115201.8444 141005.5092 126325.8151 107710.1487 155789.6349 106782.1857 1.291338718 1.563664894 1.581212285 1.105765821 1.078848907 1.320496563 1.183023313 1.008690242 1.458947799 1 16.70431146 -5.264797447 24.99551151 1.169099034 1.487231264 0.476410206 0.150551486 237.5874523 1768466.738 0.040656232 0.063150499 5.44E-06 5.264797447 0.31813223 SPPLLES(ph)PDATR ddPTM_HeLa_A486_30min_R1 1 SPPLLESPDATR 12 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 S(0.239)PPLLES(0.761)PDATR 65.295 0.018514 136820000 122120 161420 133600 38232 171430 121830 128630 138130 122490 106380 TRUE FALSE FALSE 113560.0186 148628.4913 185333.4979 89006.02814 149927.6509 106799.8533 96445.41349 106680.8144 133107.5318 79741.75558 1.424097298 1.863872826 2.324171277 1.116178437 1.880164912 1.33932157 1.209471911 1.337828765 1.669232523 1 16.28304775 -5.937133494 1.143559279 1.323848603 1.805577543 0.250392516 0.337742517 0.691367402 1.916849511 0.152295477 0.187519956 1.16E-06 5.937133494 0.481728941 SPPLS(ph)PVGTTPVK ddPTM_HeLa_A485_30min_R1 4 SPPLSPVGTTPVK 13 0 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 S(0.001)PPLS(0.998)PVGT(0.001)TPVK;SPPLS(0.995)PVGT(0.005)TPVK;SPPLS(0.99)PVGT(0.008)T(0.002)PVK;S(0.002)PPLS(0.997)PVGT(0.001)TPVK ;;; 164.53 7.60E-12 444795000 858140 934780 739290 777000 1026420 787600 898140 877830 632740 940190 TRUE FALSE FALSE 1049030.282 1044094.389 1012784.135 819445.5425 924226.0208 828837.5181 706245.0519 662540.8161 759725.1142 705817.9359 1.486261866 1.479268713 1.434908471 1.160987134 1.309439692 1.174293647 1.000605136 0.938685152 1.076375472 1 19.42893657 -5.708138842 0.58150533 0.973343036 1.555247466 0.867100865 0.07219956 0.368369207 0.252137507 0.054461532 0.116820318 1.96E-06 5.708138842 0.581904431 SPPLS(ph)PVGTTPVK ddPTM_HeLa_A486_30min_R1 3 SPPLSPVGTTPVK 13 0 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 SPPLS(0.923)PVGT(0.075)T(0.002)PVK;S(0.003)PPLS(0.992)PVGT(0.002)T(0.003)PVK;SPPLS(0.999)PVGTTPVK ;; 102.52 0.00060355 299016000 688870 584600 362017 199292 571670 526300 606390 590260 437650 652760 TRUE FALSE FALSE 640583.7703 538274.1669 502199.6776 463961.8477 499965.818 461370.457 454664.8083 455870.6833 475585.8544 489304.6472 1.309171646 1.100079817 1.026353787 0.948206501 1.021788411 0.942910433 0.929205988 0.931670455 0.971962676 1 18.90037346 -3.521946176 0.850179972 0.955261031 2.219320694 0.931276726 0.028704323 1.616416822 0.36676181 0.010014186 2.572824482 0.000300645 3.521946176 1.264059662 SPPS(ph)PGR ddPTM_HeLa_A485_30min_R1 3 SPPSPGR 7 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 SPPS(1)PGR;S(0.001)PPS(0.999)PGR;S(0.002)PPS(0.998)PGR ;; 106.42 0.003361 2444010000 696310 1100660 922170 708280 951890 921030 1005550 1200350 917830 917630 TRUE FALSE FALSE 851201.7573 1229372.613 1263319.058 746971.5429 857116.4893 969253.7066 790706.0279 905962.2804 1102030.062 688881.7287 1.235628297 1.784591696 1.833869306 1.0843248 1.244214288 1.406995811 1.147811003 1.315120205 1.599737685 1 19.39389679 -5.262616477 24.99975967 1.271198029 1.634685958 0.364231723 0.217743838 112.9290475 2398461.882 0.059864435 0.094680993 5.46E-06 5.262616477 0.363487928 SPPS(ph)PGR ddPTM_HeLa_A486_30min_R1 3 SPPSPGR 7 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 S(0.043)PPS(0.957)PGR;S(0.008)PPS(0.992)PGR;S(0.02)PPS(0.98)PGR ;; 93.143 0.0061081 1765740000 837370 681030 801220 218463 808500 775750 739170 676850 786850 778940 TRUE FALSE FALSE 778674.6872 627062.7025 1111473.841 508592.9045 707090.391 680045.8522 554221.8479 522746.0305 855054.7915 583888.354 1.333602018 1.073942815 1.903572548 0.871044783 1.211002731 1.164684734 0.949191475 0.895284222 1.464414876 1 19.15533301 -5.315854015 24.99992921 1.078626375 1.40073584 0.293363635 0.252497238 401.9018731 184646.472 0.068972377 0.102302634 4.83E-06 5.315854015 0.322109464 SPPS(ph)PGRR ddPTM_HeLa_A485_30min_R1 3 SPPSPGRR 8 1 Q03252 Q03252 LMNB2 Lamin-B2 1 0 S(0.004)PPS(0.996)PGRR;S(0.003)PPS(0.997)PGRR;SPPS(1)PGRR ;; 77.662 0.0064305 205277000 76465 87689 85564 100254 94490 84027 98579 104934 88736 139740 TRUE FALSE FALSE 93474.37545 97943.46576 117217.6842 105730.6222 85082.24383 88426.52379 77516.79133 79198.77197 106544.5013 104905.3897 0.891035014 0.933636165 1.1173657 1.007866445 0.81103787 0.84291688 0.73892096 0.75495427 1.015624665 1 16.67872928 -5.75790533 24.99763778 0.841357796 0.992908012 0.258768863 0.101990999 109.6509421 775595.7484 0.031012059 0.038436635 1.75E-06 5.75790533 0.151550216 SPPS(ph)PGRR ddPTM_HeLa_A486_30min_R1 4 SPPSPGRR 8 1 Q03252 Q03252 LMNB2 Lamin-B2 1 0 SPPS(1)PGRR;SPPS(1)PGRR;SPPS(1)PGRR;S(0.009)PPS(0.991)PGRR ;;; 85.533 0.0029049 243057000 76594.2 77510.5 69837.8 21430.3 74017.3 69225.1 73236 75834.6 64975.4 72924.3 TRUE FALSE FALSE 71225.34211 71368.28569 96880.86648 49890.82143 64733.36005 60684.81099 54911.57819 58568.71704 70607.51999 54663.58062 1.302976155 1.305591124 1.772311023 0.9126885 1.184213681 1.110150676 1.004536797 1.071439455 1.291673893 1 15.73829234 -5.277317785 24.99986038 1.087268737 1.444822641 0.551380179 0.156092025 601.975439 947782.8678 0.043322471 0.064495721 5.28E-06 5.277317785 0.357553904 SPPS(ph)PVER ddPTM_HeLa_A485_30min_R1 3 SPPSPVER 8 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 S(0.005)PPS(0.995)PVER;S(0.013)PPS(0.987)PVER;S(0.022)PPS(0.978)PVER ;; 86.879 0.0044968 7538500000 1178210 3309650 4091620 855130 2448260 1926700 1734330 2060380 2419460 1197100 TRUE FALSE FALSE 1440298.75 3696684.777 5605280.505 901843.5866 2204502.638 2027579.033 1363776.227 1555068.574 2905023.429 898685.001 1.602673627 4.113437715 6.237202689 1.003514675 2.453031525 2.256162093 1.517524189 1.73038225 3.232526888 1 19.777456 -5.287462984 24.95138522 1.939021874 3.997338942 0.384593578 1.215769794 746.4075716 715652.5459 0.342608048 0.5083581 5.16E-06 5.287462984 2.058317068 SPPS(ph)PVER ddPTM_HeLa_A486_30min_R1 4 SPPSPVER 8 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 S(0.009)PPS(0.991)PVER;S(0.002)PPS(0.998)PVER;S(0.042)PPS(0.958)PVER;S(0.004)PPS(0.996)PVER ;;; 99.864 0.0022629 14880600000 2092240 2503240 3208470 618437 3332090 2217720 2224160 2416930 2232370 2229810 TRUE FALSE FALSE 1945584.78 2304874.146 4450875.51 1439752.59 2914148.202 1944120.255 1667651.643 1866647.8 2425873.629 1671451.062 1.164009419 1.378965976 2.66288114 0.861378848 1.743484011 1.163133219 0.997726874 1.116782802 1.451357855 1 20.67266968 -6.158273119 1.555225245 1.13741515 1.610378627 0.153850259 0.459811487 0.739023221 3.579382122 0.195162655 0.191770915 6.95E-07 6.158273119 0.472963477 SPPS(ph)SSEIFTPAHEENVR ddPTM_HeLa_A485_30min_R1 1 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 S(0.007)PPS(0.486)S(0.486)S(0.02)EIFTPAHEENVR 87.287 0.00088421 137590000 22167 43065 37757 30025 37771 31194 35830 40009 36926 48997 TRUE FALSE FALSE 27097.97267 48101.07713 51724.8855 31665.18972 34010.38662 32827.2696 28174.6278 30196.73002 44336.70949 36782.94962 0.736699285 1.307700378 1.406219078 0.860865973 0.92462369 0.892458869 0.765969779 0.82094368 1.205360363 1 15.16674955 -5.295417363 24.74151598 0.908944265 1.165955802 0.212054236 0.197293634 726.4249322 528954.2274 0.055665702 0.08257144 5.07E-06 5.295417363 0.257011536 SPPS(ph)YSVLYPSSDPK ddPTM_HeLa_A485_30min_R1 1 SPPSYSVLYPSSDPK 15 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.272)PPS(0.357)Y(0.01)S(0.357)VLY(0.005)PSSDPK 69.108 0.010387 234280000 56595 81137 95503 37314 104850 83854 72178 92994 78840 57039 TRUE FALSE FALSE 69184.3625 90625.26635 130833.5339 39352.36934 94410.76585 88244.46578 56756.58066 70187.07569 94662.46484 42820.22702 1.615693501 2.116412561 3.055414298 0.919013561 2.204817032 2.060812656 1.325461928 1.639110312 2.210695071 1 15.38600482 -10.95614616 0.192609231 5.97E-11 2.138939894 0.190233426 0.552944989 57.6446122 1.656020747 28.96763147 1.695983584 1.11E-11 10.95614616 2.138939894 SPPSS(ph)SEIFTPAHEENVR ddPTM_HeLa_A486_30min_R1 1 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 S(0.263)PPS(0.042)S(0.347)S(0.347)EIFT(0.001)PAHEENVR 196.65 1.79E-19 106410000 19345 28086 16495 7483.6 28523 20895 36443 26197 28542 33528 TRUE FALSE FALSE 17989.0154 25860.36307 22882.30575 17422.199 24945.37937 18317.18734 27324.57595 20232.51498 31016.04354 25132.37057 0.715770737 1.028966329 0.910471445 0.693217496 0.992559747 0.728828476 1.087226367 0.805038065 1.234107362 1 14.61725914 -7.414690987 1.377580808 1.078979805 0.864301348 0.235420467 0.149714109 0.649910237 2.164301373 0.122840378 0.043070936 3.85E-08 7.414690987 -0.214678457 SPPST(ph)GSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_A486_30min_R1 1 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.007)PPS(0.058)T(0.406)GS(0.291)T(0.132)YGS(0.092)S(0.013)QKEESAASGGAAYTK 152.23 3.62E-09 2401700000 229070 254730 110240 91849 191510 290760 274870 246160 210380 302290 TRUE FALSE FALSE 213013.3759 234544.2671 152927.8803 213829.1138 167489.03 254888.9874 206094.6187 190114.7416 228615.9078 226594.6164 0.940063711 1.03508314 0.674896353 0.943663698 0.739157146 1.124867799 0.909530076 0.839008202 1.008920297 1 17.78975406 -6.248821038 24.9929042 0.962219848 0.869568645 0.17145109 0.118650372 1721.111102 3408972.365 0.039285658 0.039024033 5.64E-07 6.248821038 -0.092651203 SPPST(ph)GSTYGSSQKEESAASGGAAYTKR ddPTM_HeLa_A486_30min_R1 1 SPPSTGSTYGSSQKEESAASGGAAYTKR 28 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.004)PPS(0.048)T(0.234)GS(0.057)T(0.196)YGS(0.196)S(0.234)QKEES(0.029)AASGGAAYTKR 121.86 0.00015934 408100000 98932 86511 37580 29797 76327 79541 89744 77046 56905 114360 TRUE FALSE FALSE 91997.37769 79655.55329 52131.98243 69368.92186 66753.35594 69728.04013 67289.10198 59504.3077 61837.57122 85723.51164 1.073187226 0.929214772 0.608141004 0.809216988 0.778705336 0.81340625 0.784955034 0.694142209 0.721360687 1 16.38740333 -4.54393608 7.100993325 0.767804575 1.039307187 0.492181233 0.096127307 0.100016449 21.53636581 0.023059928 0.064904119 2.86E-05 4.54393608 0.271502612 SPPSTGSTYGS(ph)SQKEESAASGGAAYTKR ddPTM_HeLa_A485_30min_R1 1 SPPSTGSTYGSSQKEESAASGGAAYTKR 28 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.008)PPS(0.001)T(0.008)GS(0.112)T(0.091)YGS(0.344)S(0.344)QKEES(0.091)AASGGAAYTKR 168.34 4.01E-14 405380000 110980 125790 92336 98033 151010 172450 198540 212280 116840 155140 TRUE FALSE FALSE 135667.1181 140500.0463 126494.9288 103388.2946 135974.9142 181479.2153 156120.3071 160217.9972 140288.7163 116466.4531 1.164860047 1.206356358 1.086106131 0.887708793 1.167502835 1.558210201 1.34047447 1.375657907 1.204541844 1 16.82955494 -6.011738814 24.93388712 1.326583271 1.086423002 0.283104398 0.154216367 623.0369572 1323366.222 0.049065533 0.051832619 9.73E-07 6.011738814 -0.240160269 SPPVLGSAAAS(ph)PVHLK ddPTM_HeLa_A486_30min_R1 1 SPPVLGSAAASPVHLK 16 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 SPPVLGSAAAS(1)PVHLK 223.18 5.35E-34 288500000 30835 31277 19802 12273 29873 29485 41221 28267 22848 36511 TRUE FALSE FALSE 28673.62573 28798.49661 27469.86472 28572.16424 26126.04979 25847.44048 30907.06981 21831.22116 24828.48304 27368.40795 1.047690672 1.052253264 1.003707076 1.043983424 0.954606122 0.944426162 1.129297322 0.797679617 0.907195007 1 14.74022389 -6.535199799 0.720116786 0.918311707 1.038224318 0.194690476 0.078718226 1.094517323 1.18023868 0.063408264 0.048883651 2.92E-07 6.535199799 0.119912611 SPPY(ph)TAFLGNLPYDVTEESIK ddPTM_HeLa_A485_30min_R1 1 SPPYTAFLGNLPYDVTEESIK 21 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.432)PPY(0.56)T(0.008)AFLGNLPYDVTEESIK 182.39 6.35E-18 30451000 32060 27673 14935 36913 17761 18820 28058 24994 21944 51488 TRUE FALSE FALSE 39191.63639 30909.11663 20460.078 38929.46372 15992.65248 19805.3861 22063.17909 18864.18231 26347.95952 38652.98917 1.013935461 0.799656567 0.529327186 1.007152734 0.413749436 0.512389508 0.570801368 0.488039417 0.681653867 1 15.23829237 -2.719728361 0.75585442 0.610833978 4.823694602 0.226640186 0.196843089 30.66933419 2.062637023 0.070711397 181.8474897 0.001906653 2.719728361 4.212860624 SPPYT(ph)AFLGNLPYDVTEESIK ddPTM_HeLa_A486_30min_R1 1 SPPYTAFLGNLPYDVTEESIK 21 0 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.329)PPY(0.275)T(0.396)AFLGNLPYDVTEESIK 113.53 8.09E-05 46990000 54484 54881 24175 40442 38525 70845 74773 72209 43298 101810 TRUE FALSE FALSE 50664.95296 50532.02969 33536.20743 94151.01983 33692.83527 62104.8642 56064.00453 55768.58701 47051.1055 76316.11333 0.663882773 0.662141027 0.439438095 1.233697783 0.441490451 0.813784422 0.734628666 0.730757694 0.616529111 1 16.21970008 -11.48524952 2.131873113 4.164445312 0.707793773 0.150480261 0.210791448 6724710.376 446232.4844 103075664.6 0.050832225 3.27E-12 11.48524952 -3.456651539 SPQEEDFRCPS(ph)DEDFR ddPTM_HeLa_A485_30min_R1 2 SPQEEDFRCPSDEDFR 16 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 SPQEEDFRCPS(1)DEDFR;SPQEEDFRCPS(1)DEDFR ; 209.67 7.28E-26 1145880000 757530 748490 939150 973520 870750 614480 720860 512900 817980 1212390 TRUE FALSE FALSE 926039.9351 836019.3945 1286580.666 1026700.933 784055.0726 646653.2226 566842.3721 387110.4708 982141.083 910163.4854 1.017443514 0.918537612 1.413570954 1.128040126 0.861444219 0.710480296 0.622791818 0.425319711 1.079082054 1 19.79576618 -5.902462511 3.292514639 0.72608267 1.126646609 0.379585192 0.209644739 0.237014473 5.106746263 0.068972402 0.079242336 1.25E-06 5.902462511 0.40056394 SPQEEDFRCPS(ph)DEDFR ddPTM_HeLa_A486_30min_R1 2 SPQEEDFRCPSDEDFR 16 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 SPQEEDFRCPS(1)DEDFR;SPQEEDFRCPS(1)DEDFR ; 175.85 5.65E-13 1251590000 1032630 1692770 1304260 424480 1433850 1352050 1347480 1242460 1362080 1283270 TRUE FALSE FALSE 960247.9695 1558628.74 1809304.401 988210.892 1254003.163 1185247.818 1010326.252 959578.9807 1480146.191 961930.8393 0.998250529 1.620312684 1.880909029 1.027320106 1.303631313 1.232154921 1.050310699 0.997555065 1.538724127 1 19.87557365 -5.289307173 24.93429632 1.168030858 1.511873126 0.262587947 0.257414406 899.6164184 804916.5148 0.072167328 0.107066266 5.14E-06 5.289307173 0.343842268 SPQEEDFRCPS(ph)DEDFRQLPEEDLR ddPTM_HeLa_A486_30min_R1 1 SPQEEDFRCPSDEDFRQLPEEDLR 24 2 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 SPQEEDFRCPS(1)DEDFRQLPEEDLR 140.35 1.71E-07 144820000 56945 108900 115190 49829 155820 89046 119960 135820 84300 82274 TRUE FALSE FALSE 52953.44956 100270.3674 159794.6529 116004.4302 136275.6026 78060.40987 89944.73919 104896.7509 91607.19188 61672.05489 0.858629563 1.625863895 2.591038246 1.880988568 2.209681563 1.265733889 1.458435905 1.700879776 1.485392242 1 15.9123293 -6.276591523 24.90730551 1.430665066 1.866472029 0.196797305 0.447894579 1450.433117 2384235.137 0.164935868 0.146014263 5.29E-07 6.276591523 0.435806963 SPQLSLSPRPAS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SPQLSLSPRPASPK 14 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 SPQLSLSPRPAS(1)PK;SPQLSLSPRPAS(1)PK ; 138.97 2.18E-06 1621570000 1173110 950890 688190 1802870 1207890 967230 1568880 1239030 855500 2348100 TRUE FALSE FALSE 1434064.272 1062088.314 942780.119 1901356.223 1087628.23 1017872.667 1233675.971 935155.9498 1027191.003 1762761.884 0.813532608 0.602513773 0.534831237 1.078623404 0.617002353 0.577430609 0.699854009 0.53050611 0.582716822 1 20.74940618 -10.11398389 5.15130631 1.000008485 0.66917042 0.280817431 0.158039081 1.65E-05 2.84E-06 0.154439061 0.037455953 7.69E-11 10.11398389 -0.330838065 SPQLSLSPRPAS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SPQLSLSPRPASPK 14 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 SPQLSLSPRPAS(1)PK 157.42 7.20E-09 1049800000 623370 594000 295400 345170 468820 677760 857480 779840 477220 976090 TRUE FALSE FALSE 579674.9821 546929.2767 409786.7911 803573.2039 410016.224 594144.8622 642929.4345 602287.4558 518585.8138 731670.7107 0.792262111 0.747507408 0.560069967 1.098271657 0.560383541 0.812038604 0.878714188 0.823167372 0.708769404 1 19.48083498 -14 0.221933428 2.127543915 0.750186334 0.169225622 0.147514032 276.6552466 2.76959906 139.8077678 0.267605725 1.00E-14 14 -1.377357582 SPQNSHSHSTPSSSVRPNS(ph)PSPTALAFGDHPIVQPK ddPTM_HeLa_A485_30min_R1 2 SPQNSHSHSTPSSSVRPNSPSPTALAFGDHPIVQPK 36 1 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;B3KRP1;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 SPQNSHSHST(0.001)PS(0.001)S(0.001)S(0.001)VRPNS(0.984)PS(0.013)PT(0.001)ALAFGDHPIVQPK;SPQNSHSHS(0.002)T(0.007)PS(0.007)S(0.007)S(0.024)VRPNS(0.932)PS(0.019)PT(0.002)ALAFGDHPIVQPK ; 157.56 1.91E-10 2139200000 256375 559130 569140 91074 746700 375420 482720 560740 479200 201271 TRUE FALSE FALSE 313404.7343 624515.3897 779688.5699 96049.14201 672355.9262 395076.4107 379582.9285 423217.6358 575371.0445 151097.8438 2.074184028 4.133185318 5.160156824 0.635675133 4.449804902 2.614705814 2.512166414 2.800950861 3.807936831 1 17.20512355 -10.87180673 2.58176064 0.000461935 3.143321877 0.209612956 1.241870452 8278340.509 5466987.143 50771366.28 0.301644072 1.34E-11 10.87180673 3.142859942 SPQPVCS(ph)PAGSEGTPK ddPTM_HeLa_A485_30min_R1 3 SPQPVCSPAGSEGTPK 16 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 SPQPVCS(0.998)PAGS(0.002)EGTPK;SPQPVCS(1)PAGSEGTPK;SPQPVCS(0.993)PAGS(0.006)EGTPK ;; 315.21 2.80E-78 689900000 789020 736457 677396 1126860 1067140 778630 1133200 1003080 746850 1327950 TRUE FALSE FALSE 964534.7769 822579.2398 927992.9692 1188417.508 960891.7946 819397.8628 891082.5626 757073.0572 896735.9445 996916.5041 0.967518115 0.825123505 0.930863282 1.192093323 0.963863865 0.821932288 0.893838711 0.759414709 0.899509579 1 19.92711315 -6.195223543 7.137619829 0.861224082 0.977614933 0.189182723 0.102648678 0.437809664 40.98517831 0.035716304 0.035668104 6.38E-07 6.195223543 0.116390851 SPQPVCS(ph)PAGSEGTPK ddPTM_HeLa_A486_30min_R1 4 SPQPVCSPAGSEGTPK 16 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 SPQPVCS(1)PAGSEGTPK;SPQPVCS(1)PAGSEGTPK;SPQPVCS(1)PAGSEGTPK;SPQPVCS(1)PAGSEGTPK ;;; 343.59 1.28E-91 881010000 988460 1111270 615913 427365 934680 1007940 1199220 1255990 794070 1218030 TRUE FALSE FALSE 919174.0584 1023208.918 854411.0083 994927.3178 817443.7189 883590.6108 899162.4719 970028.4951 862900.627 913027.36 1.006732217 1.12067717 0.935800005 1.089701537 0.895311307 0.967759182 0.984814378 1.062430917 0.945098323 1 19.80029857 -4.763957231 24.99651188 0.987241584 1.063704685 0.214459893 0.060054076 90.82157523 901693.1527 0.014957166 0.033626154 1.72E-05 4.763957231 0.076463101 SPQPVPSPRPQSQPPHS(ph)SPSPR ddPTM_HeLa_A485_30min_R1 1 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 SPQPVPSPRPQS(0.001)QPPHS(0.631)S(0.361)PS(0.007)PR 114.21 5.81E-05 160160000 34111 86367 99033 23534 98737 61872 93801 117560 103580 59328 TRUE FALSE FALSE 41698.87427 96466.86936 135669.4278 24819.60283 88906.39759 65111.52225 73759.65007 88728.22567 124367.5559 44538.62145 0.936240793 2.165915024 3.046107477 0.557260239 1.996164109 1.461911486 1.656082916 1.992163717 2.79235306 1 15.44276928 -7.324210771 6.255684604 2.049734909 1.718940784 0.012267254 0.756675117 1.009408252 78.96939281 0.412597097 0.195853525 4.74E-08 7.324210771 -0.330794125 SPQPVPSPRPQSQPPHSS(ph)PSPR ddPTM_HeLa_A485_30min_R1 1 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 SPQPVPSPRPQSQPPHS(0.213)S(0.777)PS(0.01)PR 177.8 2.29E-15 178680000 40952 98671 121230 25774 118550 75350 99776 142990 135710 63586 TRUE FALSE FALSE 50061.63112 110209.7151 166078.0218 27181.96836 106746.7457 79295.20949 78458.04251 107921.4783 162945.7522 47735.18041 1.048736606 2.308773407 3.479153538 0.56943261 2.236227973 1.66114821 1.643610474 2.26083734 3.413535903 1 15.54276529 -7.507330087 23.95233024 2.416906975 1.892872496 0.022850925 0.915856699 1253.487624 1930992.883 0.509513616 0.232001326 3.11E-08 7.507330087 -0.524034479 SPQPVPSPRPQSQPPHSS(ph)PSPR ddPTM_HeLa_A486_30min_R1 1 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 SPQPVPSPRPQSQPPHS(0.203)S(0.78)PS(0.017)PR 161.39 6.15E-14 222180000 107540 124040 139550 9355.3 171510 77468 97715 91970 113380 45043 TRUE FALSE FALSE 100002.0013 114210.6187 193587.4973 21779.61119 149997.6165 67910.7858 73265.67348 71030.43869 123207.8697 33763.93962 2.961798963 3.382621221 5.733557738 0.645055389 4.44253894 2.011340696 2.169938529 2.103736693 3.649096376 1 15.04319563 -5.261639064 24.99999992 2.408028163 3.961655384 0.285874864 1.247051571 25.1385475 3147462.213 0.331691492 0.529464957 5.47E-06 5.261639064 1.553627222 SPQQTVPYVVPLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 SPQQTVPYVVPLS(1)PK;SPQQTVPYVVPLS(1)PK ; 176.69 7.25E-13 267120000 610030 581440 293660 363180 498010 635070 879120 785610 457910 986820 TRUE FALSE FALSE 567270.0472 535364.5768 407373.0165 845501.3941 435544.942 556721.5203 659154.8776 606743.7527 497602.0075 739713.8489 0.766877689 0.72374551 0.550717033 1.143011443 0.58880193 0.752617409 0.891094413 0.82024117 0.67269527 1 19.49660776 -14 0.28742184 2.732226497 0.757374113 0.157247904 0.158383911 464.4063369 4.404833678 482.3202853 0.169289088 1.00E-14 14 -1.974852384 SPQTLAPVGEDAMKT(ph)PS(ph)PAAEDAREPEAK ddPTM_HeLa_A485_30min_R1 1 SPQTLAPVGEDAMKTPSPAAEDAREPEAK 29 2 Q92797 Q92797 SYMPK Symplekin 2 0 SPQTLAPVGEDAMKT(1)PS(1)PAAEDAREPEAK 91.532 0.0078083 167970000 162690 116410 72776 389370 181610 148780 335680 279950 89419 472800 TRUE FALSE FALSE 198879.8292 130023.1369 99698.87086 410640.2972 163528.2707 156569.8907 263959.2257 211291.8236 107364.5731 354939.6612 0.560320108 0.366324621 0.280889632 1.156929873 0.460721324 0.441116922 0.743673516 0.595289416 0.30248683 1 18.43721427 -11.20618922 2.287118745 2.327322325 0.552005945 0.237685301 0.244025143 37679351.7 7814795.931 258444350 0.064062687 6.22E-12 11.20618922 -1.77531638 SPQTLAPVGEDAMKT(ph)PS(ph)PAAEDAREPEAK ddPTM_HeLa_A486_30min_R1 3 SPQTLAPVGEDAMKTPSPAAEDAREPEAK 29 2 Q92797 Q92797 SYMPK Symplekin 2 0 SPQTLAPVGEDAMKT(1)PS(1)PAAEDAREPEAK;S(0.015)PQT(0.018)LAPVGEDAMKT(0.968)PS(0.999)PAAEDAREPEAK;SPQTLAPVGEDAMKT(1)PS(1)PAAEDAREPEAK ;; 114.58 0.0007373 502540000 509530 386324 156125 441570 312069 529050 815860 666360 288731 1189350 TRUE FALSE FALSE 473814.5782 355710.2793 216580.7812 1027997.276 272926.3961 463781.19 611723.1987 514644.3745 313758.4356 891529.0186 0.531462878 0.398989009 0.242931836 1.153072143 0.306132936 0.520208743 0.686150631 0.577260374 0.351932948 1 19.76592223 -11.05672046 2.631070014 1.655739748 0.534975593 0.249892502 0.244248054 24101615.65 8884398.232 95041436.17 0.059402555 8.78E-12 11.05672046 -1.120764155 SPQTLAPVGEDAMKTPS(ph)PAAEDAREPEAK ddPTM_HeLa_A485_30min_R1 1 SPQTLAPVGEDAMKTPSPAAEDAREPEAK 29 2 Q92797 Q92797 SYMPK Symplekin 1 0 SPQTLAPVGEDAMKTPS(1)PAAEDAREPEAK 174.16 7.62E-15 253170000 80498 52014 37080 148890 109940 122850 210920 222480 67183 210370 TRUE FALSE FALSE 98404.50239 58096.58484 50797.43503 157023.4837 98993.98758 129282.236 165855.2189 167916.4312 80666.01186 157928.6306 0.623094761 0.367866071 0.321648043 0.994268633 0.626827366 0.818611771 1.050190952 1.063242495 0.510775099 1 17.26891321 -5.259778053 24.99955135 0.864609234 0.430569256 0.527401461 0.185944668 116.4139506 1751778.153 0.051479925 0.083525426 5.50E-06 5.259778053 -0.434039978 SPQTLAPVGEDAMKTPS(ph)PAAEDAREPEAK ddPTM_HeLa_A486_30min_R1 1 SPQTLAPVGEDAMKTPSPAAEDAREPEAK 29 2 Q92797 Q92797 SYMPK Symplekin 1 0 SPQTLAPVGEDAMKT(0.021)PS(0.979)PAAEDAREPEAK 132.34 1.41E-06 212470000 32968 44529 21211 39100 48956 57088 79355 73131 32380 103920 TRUE FALSE FALSE 30657.11345 41000.35987 29424.46725 91026.776 42815.48198 50045.06299 59499.53967 56480.66774 35186.72447 77897.75559 0.393555799 0.526335574 0.3777319 1.168541703 0.549636914 0.642445506 0.763815841 0.725061554 0.451703957 1 16.24929414 SPRPAS(ph)PASNVVVLPSGSTVYVK ddPTM_HeLa_A485_30min_R1 2 SPRPASPASNVVVLPSGSTVYVK 23 1 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 S(0.021)PRPAS(0.935)PAS(0.043)NVVVLPSGSTVYVK;S(0.05)PRPAS(0.937)PAS(0.013)NVVVLPSGSTVYVK ; 125.83 1.75E-06 732500000 561760 841330 627290 539780 844500 777530 912210 1159300 679100 765520 TRUE FALSE FALSE 686721.574 939716.2249 859350.6747 569266.8146 760418.6148 818240.2685 717308.8814 874979.8573 815389.1409 574689.9524 1.194942718 1.635170793 1.495329214 0.990563368 1.323180633 1.423794283 1.248166735 1.522525065 1.418833125 1 19.1324243 -10.79813077 2.578957034 0.890129927 1.364595528 0.277597807 0.174826547 43217328.95 27444379.59 29614245.23 0.044251424 1.59E-11 10.79813077 0.4744656 SPRPAS(ph)PASNVVVLPSGSTVYVK ddPTM_HeLa_A486_30min_R1 2 SPRPASPASNVVVLPSGSTVYVK 23 1 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 S(0.025)PRPAS(0.965)PAS(0.011)NVVVLPSGSTVYVK;S(0.024)PRPAS(0.963)PAS(0.014)NVVVLPSGSTVYVK ; 138.61 3.17E-07 872370000 1120090 962390 723190 276820 990830 912080 996780 1028660 800560 1107560 TRUE FALSE FALSE 1041577.475 886126.7114 1003228.536 644450.9497 866550.8623 799556.8429 747375.1011 794456.5735 869953.1854 830219.767 1.254580433 1.067339934 1.208389122 0.776241395 1.043760817 0.963066497 0.900213571 0.956923221 1.047858916 1 19.66313376 -5.234552423 24.97163193 0.955339872 1.165826873 0.584286709 0.085403976 520.8415579 483738.1928 0.022041752 0.038163927 5.83E-06 5.234552423 0.210487001 SPRPGSSAPEHS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SPRPGSSAPEHSPR 14 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 SPRPGSSAPEHS(1)PR;SPRPGS(0.001)S(0.002)APEHS(0.997)PR ; 74.793 0.0046628 177481000 109431 156009 142835 83110 152847 151972 141380 173211 136836 116368 TRUE FALSE FALSE 133773.5484 174252.8955 195675.6104 87650.08885 137629.016 159929.0189 111173.008 130730.7307 164297.7301 87359.59919 1.531297644 1.994662259 2.239886769 1.003325217 1.575430946 1.830697718 1.272590638 1.496466695 1.880706088 1 16.41467862 -11.77361675 0.133865562 2.83E-14 1.930738466 0.23403088 0.342718653 108.1300202 1.633705915 36.53571633 2.873238345 1.68E-12 11.77361675 1.930738466 SPRPGSSAPEHS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SPRPGSSAPEHSPR 14 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 SPRPGSS(0.002)APEHS(0.998)PR 78.501 0.002809 105150000 97709 105050 103210 17075 120580 87033 88848 102970 95299 91644 TRUE FALSE FALSE 90860.10367 96725.45541 143175.6761 39751.46292 105455.732 76295.75335 66617.29066 79525.97882 103559.5941 68695.7459 1.322645274 1.40802686 2.084200036 0.578659747 1.535112992 1.110632869 0.969744047 1.157655074 1.507511021 1 16.06793314 -5.256571432 24.99996919 1.139628848 1.585264283 0.325500512 0.317060423 520.3507958 2672318.715 0.084583238 0.140712346 5.54E-06 5.256571432 0.445635436 SPRPQQDPARPQEPTMPPPETPSEGRQPS(ph)PSPSPTER ddPTM_HeLa_A486_30min_R1 2 SPRPQQDPARPQEPTMPPPETPSEGRQPSPSPSPTER 37 3 H3BT57;P29590-14;P29590-10;P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 SPRPQQDPARPQEPTMPPPET(0.001)PS(0.024)EGRQPS(0.43)PS(0.43)PS(0.093)PT(0.021)ER;SPRPQQDPARPQEPTMPPPETPSEGRQPS(0.486)PS(0.486)PS(0.027)PT(0.002)ER ; 129.34 1.84E-06 1364170000 86322 97432 84097 31806 100932 74761 90313 113650 62872 81902 TRUE FALSE FALSE 80271.27357 89711.13348 116661.6106 74045.97539 88272.16741 65537.74793 67715.73217 87774.37596 68321.79558 61393.20611 1.307494406 1.461255067 1.900236492 1.206093965 1.437816544 1.067508151 1.102984132 1.429708294 1.112855964 1 15.90579139 -5.747342332 1.834802775 1.178488988 1.531670098 0.380315782 0.200512501 0.377872743 2.625534043 0.069907643 0.09311332 1.79E-06 5.747342332 0.35318111 SPRS(ph)PSGHPHVR ddPTM_HeLa_A485_30min_R1 2 SPRSPSGHPHVR 12 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.246)PRS(0.753)PS(0.001)GHPHVR;S(0.179)PRS(0.82)PS(0.001)GHPHVR ; 115.68 0.0001563 278830000 24622 105092 72788 9882.4 185488 143979 187711 571710 60974 23109 TRUE FALSE FALSE 30099.07896 117381.5952 99715.31016 10422.25049 167020.1634 151517.5178 147605.0114 431497.2261 73210.92251 17348.35159 1.73498207 6.766152658 5.747826221 0.600763158 9.627437084 8.733827939 8.508301819 24.87252024 4.220050656 1 14.08251097 -5.843597847 8.73871017 10 4.084125108 0.17556899 6.059067227 0.497758757 47.62228766 1.872457939 2.126870156 1.43E-06 5.843597847 -5.915874892 SPRS(ph)PSGHPHVR ddPTM_HeLa_A486_30min_R1 2 SPRSPSGHPHVR 12 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.165)PRS(0.828)PS(0.007)GHPHVR;S(0.246)PRS(0.743)PS(0.011)GHPHVR ; 95.57 0.00093299 92709000 36352 18219 44663 6604.3 142244 24603.7 46417 71407 14505.9 16318.3 TRUE FALSE FALSE 33803.91252 16775.26009 61957.70972 15375.14416 124402.4311 21568.34565 34802.97565 55149.1849 15763.28309 12232.09147 2.763543145 1.371413886 5.065177111 1.256951373 10.17016849 1.763259023 2.845218722 4.508565445 1.288682572 1 13.57838348 -4.745826196 24.97935918 3.687079884 2.067478624 0.040488655 2.624147439 753.142566 1204924.72 0.643675468 1.690050964 1.80E-05 4.745826196 -1.61960126 SPS(ph)APAATSSASSSTSSYK ddPTM_HeLa_A485_30min_R1 1 SPSAPAATSSASSSTSSYK 19 0 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.025)PS(0.975)APAATSSASSSTSSYK 185.99 3.30E-18 241140000 102560 91574 83339 116760 120120 110130 120380 129790 95533 158160 TRUE FALSE FALSE 125374.1182 102282.7827 114169.5641 123138.3031 108160.431 115896.2365 94659.82959 97958.799 114705.5968 118733.6227 1.055927675 0.861447502 0.961560521 1.037097162 0.910950315 0.976102926 0.797245358 0.825029985 0.966075103 1 16.85736901 -6.711012247 24.99995986 0.882505988 0.962741631 0.155677866 0.076613767 169.5077439 84035.32137 0.028543487 0.022109652 1.95E-07 6.711012247 0.080235643 SPS(ph)DSSTASTPVAEQIER ddPTM_HeLa_A486_30min_R1 2 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 S(0.021)PS(0.965)DS(0.014)STASTPVAEQIER;S(0.024)PS(0.976)DSSTASTPVAEQIER ; 227.63 1.04E-34 5635200000 634600 876690 565700 169853 639950 603920 827060 698100 616020 717640 TRUE FALSE FALSE 590117.8171 807217.8915 784754.19 395426.3679 559681.5037 529414.4906 620120.8403 539157.8694 669417.1096 537938.2729 1.096999129 1.500577171 1.458818287 0.735077587 1.040419565 0.98415472 1.15277323 1.002267168 1.244412497 1 19.03708111 -5.237879794 24.99815744 1.027372016 1.366976124 0.475092301 0.158384787 666.8169606 707532.5395 0.042362208 0.073320186 5.78E-06 5.237879794 0.339604108 SPS(ph)FASEWDEIEK ddPTM_HeLa_A485_30min_R1 6 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.357)PS(0.643)FASEWDEIEK;SPS(1)FASEWDEIEK;S(0.048)PS(0.952)FASEWDEIEK;S(0.002)PS(0.998)FASEWDEIEK;S(0.002)PS(0.998)FASEWDEIEK;S(0.059)PS(0.941)FASEWDEIEK ;;;;; 328.41 8.54E-81 1839353000 1185458 1155294 865975 1451481 1438456 1216622 1776621 1800361 975451 1952641 TRUE FALSE FALSE 1449159.042 1290395.584 1186335.189 1530771.732 1295238.27 1280322.447 1397031.41 1358819.642 1171215.068 1465883.534 0.988590845 0.880285202 0.809297029 1.044265588 0.883588798 0.873413485 0.95303029 0.926962893 0.798982348 1 20.48333905 SPS(ph)FASEWDEIEK ddPTM_HeLa_A486_30min_R1 4 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.001)PS(0.999)FASEWDEIEK;S(0.009)PS(0.991)FASEWDEIEK;SPS(1)FASEWDEIEK;S(0.204)PS(0.796)FASEWDEIEK ;;; 370.89 4.71E-109 1963940000 1661820 1749200 919470 700350 1677160 1738120 2114300 2166850 1286540 2261990 TRUE FALSE FALSE 1545335 1610587.022 1275513.408 1630450.194 1466794.954 1523688.426 1585279.777 1673505.557 1398058.323 1695572.981 0.911393975 0.949877734 0.752260989 0.96159246 0.865073324 0.898627451 0.934952252 0.98698527 0.824534443 1 20.69334145 -6.69651148 4.371967991 0.935706859 0.887609528 0.100144471 0.069199828 0.534818591 20.10180649 0.026929199 0.020013529 2.01E-07 6.69651148 -0.048097331 SPS(ph)FGAGEGLLR ddPTM_HeLa_A485_30min_R1 4 SPSFGAGEGLLR 12 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.01)PS(0.99)FGAGEGLLR;S(0.172)PS(0.828)FGAGEGLLR;S(0.467)PS(0.533)FGAGEGLLR;S(0.406)PS(0.594)FGAGEGLLR ;;; 186.51 5.20E-13 897860000 344325 479929 504377 387251 648868 469359 635705 677883 510552 571129 TRUE FALSE FALSE 420918.9083 536052.5217 690967.0412 408405.5416 584264.4236 493933.9115 499881.4335 511631.1314 613015.1033 428757.0512 0.981718918 1.250247711 1.611558432 0.952533703 1.362693446 1.152013501 1.165885044 1.193289137 1.429749322 1 18.70980087 SPS(ph)FGAGEGLLR ddPTM_HeLa_A486_30min_R1 3 SPSFGAGEGLLR 12 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.013)PS(0.987)FGAGEGLLR;S(0.194)PS(0.806)FGAGEGLLR;S(0.014)PS(0.986)FGAGEGLLR ;; 95.98 0.0015238 834440000 362340 432750 391040 162323 485320 414060 491380 535550 384890 415150 TRUE FALSE FALSE 336941.8371 398457.314 542461.1604 377896.1474 424446.6402 362977.4871 368431.5267 413616.956 418252.5751 311193.7378 1.082739773 1.280415592 1.743162199 1.214343675 1.363930531 1.166403571 1.183929758 1.329130075 1.344026323 1 18.2474535 -6.247603981 22.49943034 1.223970564 1.349538737 0.110655973 0.181641383 542.6219053 882421.8963 0.06153803 0.061124345 5.65E-07 6.247603981 0.125568173 SPS(ph)GGAAGPLLTPSQSLDGSR ddPTM_HeLa_A486_30min_R1 2 SPSGGAAGPLLTPSQSLDGSR 21 0 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.201)PS(0.799)GGAAGPLLTPSQSLDGSR;S(0.233)PS(0.767)GGAAGPLLTPSQSLDGSR ; 200.73 1.90E-26 1633050000 323290 383870 394590 71241 544530 367080 302610 357020 347080 201429 TRUE FALSE FALSE 300629.0405 353450.7432 547385.8155 165852.6483 476229.9699 321793.4018 226893.7773 275734.3397 377165.1739 150989.8673 1.991054405 2.340890481 3.625314898 1.098435619 3.154052509 2.131225145 1.502708634 1.826177773 2.49795023 1 17.20409221 -10.11497569 0.20094346 6.07E-13 2.613120096 0.23368742 0.695312107 29.63581781 1.261595013 18.39910226 2.036114922 7.67E-11 10.11497569 2.613120096 SPS(ph)GLR ddPTM_HeLa_A485_30min_R1 1 SPSGLR 6 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;G3V2D8;G3V2M2;Q68DK2-4;Q9BQ24-2;Q9BQ24;G3V5D6;Q68DK2-5;Q68DK2-2;Q68DK2 P49815-5;Q68DK2-5 TSC2;ZFYVE26;ZFYVE21 Tuberin;Zinc finger FYVE domain-containing protein 26;Zinc finger FYVE domain-containing protein 21 1 0 S(0.005)PS(0.995)GLR 70.67 0.028136 525790000 257110 359190 384250 273220 384420 350880 386820 473860 337550 394340 TRUE FALSE FALSE 314303.2325 401194.146 526400.065 288145.3168 346145.795 369251.5342 304172.747 357645.092 405293.1888 296038.2953 1.061697887 1.355210297 1.778148548 0.973337981 1.169260195 1.247310027 1.027477701 1.208104146 1.369056623 1 18.17542429 -5.304965809 24.99949692 1.151491376 1.394039595 0.26050089 0.19738363 649.1792233 372856.1688 0.056039873 0.08312115 4.95E-06 5.304965809 0.242548219 SPS(ph)GLR ddPTM_HeLa_A486_30min_R1 1 SPSGLR 6 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;G3V2D8;G3V2M2;Q68DK2-4;Q9BQ24-2;Q9BQ24;G3V5D6;Q68DK2-5;Q68DK2-2;Q68DK2 P49815-5;Q68DK2-5 TSC2;ZFYVE26;ZFYVE21 Tuberin;Zinc finger FYVE domain-containing protein 26;Zinc finger FYVE domain-containing protein 21 1 0 S(0.004)PS(0.996)GLR 65.676 0.03324 389880000 350810 371160 269400 106190 372140 354900 427330 446130 322810 383290 TRUE FALSE FALSE 326220.0306 341747.9299 373718.8948 247215.6865 325462.7311 311116.0464 320407.5142 344555.9379 350791.4307 287311.6892 1.135422062 1.189467546 1.300743787 0.860444235 1.13278625 1.082852032 1.115191363 1.199240932 1.220943818 1 18.13225716 -11.4278291 2.032287746 3.21E-05 1.135058891 0.123383305 0.109747959 1590201.056 213991.1308 7270804.076 0.028501902 3.73E-12 11.4278291 1.135026812 SPS(ph)GLRPR ddPTM_HeLa_A485_30min_R1 1 SPSGLRPR 8 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 S(0.279)PS(0.721)GLRPR 70.441 0.00799 817370000 24319 42950 39635 27560 36913 34646 38819 41028 25520 35279 TRUE FALSE FALSE 29728.67765 47972.62888 54297.63585 29065.53301 33237.81211 36460.01099 30525.00353 30965.81867 30641.62992 26484.59456 1.122489437 1.811340882 2.050159225 1.097450556 1.254986631 1.376649769 1.15255695 1.169201159 1.156960506 1 14.6928658 -5.284440429 24.88926993 1.190700441 1.676331005 0.474858382 0.234849615 625.6586883 677019.3747 0.066589209 0.098840225 5.19E-06 5.284440429 0.485630565 SPS(ph)GSAFGSQENLR ddPTM_HeLa_A485_30min_R1 1 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.007)PS(0.993)GSAFGSQENLR 154.99 2.92E-08 755040000 163070 198460 215580 174140 283730 201940 228760 280850 187240 233240 TRUE FALSE FALSE 199344.3589 221668.1706 295332.013 183652.8273 255480.845 212513.2661 179883.5572 211971.0971 224817.3505 175097.5605 1.138475935 1.265969497 1.686671203 1.04886 1.459077124 1.213684906 1.027333315 1.210588523 1.283954785 1 17.41779946 -6.514752499 24.40911939 1.144088315 1.323571211 0.197770381 0.179339344 497.3466772 1493910.1 0.065294447 0.053070923 3.06E-07 6.514752499 0.179482896 SPS(ph)GSAFGSQENLR ddPTM_HeLa_A486_30min_R1 1 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.029)PS(0.971)GSAFGSQENLR 190.82 9.58E-18 848810000 267600 289590 258720 87601 326280 285250 308410 348340 227110 285760 TRUE FALSE FALSE 248842.6219 266641.8337 358903.3128 203939.5551 285354.92 250058.7552 231242.556 269030.5862 246796.0777 214203.836 1.161709456 1.244804195 1.675522341 0.952081713 1.332165312 1.167386915 1.07954442 1.255955968 1.152155266 1 17.70862479 -5.287870216 24.99967513 1.152205086 1.34909144 0.284331892 0.162610217 1042.380196 985935.5929 0.044963993 0.066714747 5.15E-06 5.287870216 0.196886354 SPS(ph)HSGNAGDLK ddPTM_HeLa_A486_30min_R1 1 SPSHSGNAGDLK 12 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(0.194)PS(0.803)HS(0.003)GNAGDLK 75.483 0.0089607 732690000 381000 357100 257910 159570 363060 415220 485740 465720 305330 490780 TRUE FALSE FALSE 354293.8675 328802.0955 357779.6591 371487.0242 317521.6294 363994.378 364202.7144 359685.7226 331796.2502 367885.4936 0.963054738 0.893762057 0.972529946 1.009789814 0.863099076 0.989423025 0.989989333 0.977711078 0.90190088 1 18.48889726 SPS(ph)MPCSVIRPILK ddPTM_HeLa_A485_30min_R1 2 SPSMPCSVIRPILK 14 1 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 S(0.171)PS(0.829)MPCSVIRPILK;S(0.011)PS(0.989)MPCSVIRPILK ; 140.75 6.40E-07 1194120000 849570 911880 795120 994880 1206420 1055010 1428030 1554190 977170 1302770 TRUE FALSE FALSE 1038553.916 1018516.434 1089267.976 1049227.775 1086304.589 1110248.692 1122919.725 1173022.466 1173279.056 978013.4147 1.061901503 1.041413562 1.11375566 1.072815321 1.110725653 1.135208041 1.148163929 1.199393023 1.199655381 1 19.89949473 -5.970502777 1.2364151 1.153016196 1.066780177 0.209230952 0.055253423 0.568415532 1.819987511 0.023455532 0.027527584 1.07E-06 5.970502777 -0.086236019 SPS(ph)MPCSVIRPILK ddPTM_HeLa_A486_30min_R1 1 SPSMPCSVIRPILK 14 1 P30305-2;P30305;P30305-4;G8JLH2;B4DIG0;P30305-3 P30305-2;P30305-3 CDC25B M-phase inducer phosphatase 2 1 0 S(0.063)PS(0.936)MPCS(0.001)VIRPILK 118.55 5.66E-05 663050000 319780 360770 249230 108250 389400 371670 395290 460030 299700 408780 TRUE FALSE FALSE 297365.0733 332181.2713 345738.5306 252011.4707 340557.821 325817.1343 296384.261 355291.2114 325678.2373 306418.8273 0.97045301 1.084075917 1.128320129 0.822441209 1.111412846 1.063306511 0.967252122 1.15949537 1.06285322 1 18.22514542 SPS(ph)MPENLNRPR ddPTM_HeLa_A485_30min_R1 4 SPSMPENLNRPR 12 1 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;H0Y999 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 S(0.099)PS(0.901)MPENLNRPR;S(0.001)PS(0.999)MPENLNRPR;S(0.007)PS(0.993)MPENLNRPR;S(0.281)PS(0.719)MPENLNRPR ;;; 148.57 7.30E-08 9830700000 2524860 3438810 3267500 2731880 3980190 3602870 4229930 4469260 3414980 3824580 TRUE FALSE FALSE 3086506.396 3840948.916 4476284.222 2881115.687 3583908.308 3791510.702 3326170.9 3373166.977 4100335.162 2871182.592 1.074994814 1.337758499 1.559038507 1.003459583 1.248234201 1.320539736 1.158467215 1.17483541 1.428099757 1 21.45321365 -10.64202759 2.652079472 0.971195627 1.256429892 0.194223617 0.156525116 54022635.5 47131141.11 10624362.24 0.038483179 2.28E-11 10.64202759 0.285234265 SPS(ph)MPENLNRPR ddPTM_HeLa_A486_30min_R1 5 SPSMPENLNRPR 12 1 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;H0Y999 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 S(0.002)PS(0.998)MPENLNRPR;S(0.199)PS(0.801)MPENLNRPR;S(0.001)PS(0.999)MPENLNRPR;S(0.028)PS(0.972)MPENLNRPR;S(0.099)PS(0.901)MPENLNRPR ;;;; 151.07 5.70E-08 7210730000 2534660 2935728 2426275 931154 3172127 2686848 3226752 3162490 2400453 2881825 TRUE FALSE FALSE 2356993.423 2703090.222 3365793.658 2167773.57 2774249.253 2355372.012 2419384.52 2442460.064 2608526.199 2160197.262 1.091101014 1.251316381 1.558095511 1.003507229 1.284257369 1.090350429 1.119983143 1.13066529 1.207540739 1 21.04273163 -5.302064647 24.99998681 1.130590393 1.295286289 0.276279672 0.133103135 694.8283385 427582.0735 0.036934576 0.054783715 4.99E-06 5.302064647 0.164695896 SPS(ph)PAHLPDDPK ddPTM_HeLa_A485_30min_R1 8 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.124)PS(0.876)PAHLPDDPK;S(0.001)PS(0.999)PAHLPDDPK;S(0.012)PS(0.988)PAHLPDDPK;S(0.003)PS(0.997)PAHLPDDPK;S(0.025)PS(0.975)PAHLPDDPK;S(0.204)PS(0.796)PAHLPDDPK;S(0.123)PS(0.877)PAHLPDDPK;S(0.009)PS(0.991)PAHLPDDPK ;;;;;;; 200.76 4.78E-17 10727040000 10573410 9322830 7984056 15008130 12465860 10342390 14641070 12045950 9392340 20090370 TRUE FALSE FALSE 12925428.58 10413053.87 10937690.56 15827986.14 11224715.21 10883901.55 11512885.79 9091661.875 11277296.49 15082210.49 0.856998288 0.690419609 0.725204741 1.04944737 0.744235416 0.721638353 0.763342071 0.602806988 0.747721728 1 23.84634455 -5.944589079 24.99981053 0.741025336 0.823469599 0.044077693 0.129088858 236.9178508 106888.9371 0.03981145 0.045141935 1.14E-06 5.944589079 0.082444263 SPS(ph)PAHLPDDPK ddPTM_HeLa_A486_30min_R1 7 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.021)PS(0.979)PAHLPDDPK;S(0.042)PS(0.958)PAHLPDDPK;S(0.133)PS(0.867)PAHLPDDPK;S(0.17)PS(0.83)PAHLPDDPK;S(0.032)PS(0.968)PAHLPDDPK;S(0.009)PS(0.991)PAHLPDDPK;S(0.004)PS(0.996)PAHLPDDPK ;;;;;; 208.08 3.65E-22 8819470000 6025770 6128190 3135645 1932737 5225160 6665270 7933500 7389180 4787208 7910900 TRUE FALSE FALSE 5603394.64 5642569.906 4349850.719 4499509.411 4569771.71 5842976.755 5948454.388 5706825.019 5202167.044 5929959.149 0.94492972 0.95153605 0.733538058 0.758775786 0.770624484 0.985331704 1.003118949 0.962371726 0.877268614 1 22.49959074 -6.271569428 24.9446409 0.965610235 0.829003455 0.440678276 0.075299428 726.5300706 1789031.789 0.029332145 0.026170422 5.35E-07 6.271569428 -0.13660678 SPS(ph)PAHLPDDPKVAEK ddPTM_HeLa_A485_30min_R1 4 SPSPAHLPDDPKVAEK 16 1 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.004)PS(0.996)PAHLPDDPKVAEK;S(0.099)PS(0.901)PAHLPDDPKVAEK;S(0.032)PS(0.968)PAHLPDDPKVAEK;S(0.168)PS(0.832)PAHLPDDPKVAEK ;;; 184.78 4.52E-18 3896410000 2970120 3995560 1966050 2677270 5187240 6562700 10103900 14909600 3101220 4832880 TRUE FALSE FALSE 3630812.947 4462805.985 2693373.709 2823522.481 4670780.172 6906312.824 7945119.224 11252997.22 3723606.408 3628131.959 1.000738945 1.230056138 0.742358255 0.778230371 1.287378801 1.903545103 2.189865009 3.101595353 1.026315043 1 21.7907955 -6.162107265 2.879364426 2.008859601 0.949339118 0.336216641 0.581022967 0.26893553 4.322817945 0.202871706 0.200771979 6.88E-07 6.162107265 -1.059520483 SPS(ph)PAHLPDDPKVAEK ddPTM_HeLa_A486_30min_R1 3 SPSPAHLPDDPKVAEK 16 1 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.021)PS(0.979)PAHLPDDPKVAEK;S(0.141)PS(0.859)PAHLPDDPKVAEK;S(0.197)PS(0.803)PAHLPDDPKVAEK ;; 205.24 1.58E-25 2306020000 4933320 3169670 1801770 1910850 5211620 3688940 6960400 7266700 2261500 6911900 TRUE FALSE FALSE 4587519.744 2918493.805 2499463.597 4448555.369 4557930.023 3233836.089 5218834.3 5612231.041 2457528.641 5181115.251 0.885430939 0.563294516 0.482418066 0.858609615 0.879719868 0.6241583 1.007280102 1.083209072 0.474324257 1 22.30483125 -5.291397713 23.68342702 0.849011343 0.635672497 0.182885564 0.196413948 566.0677908 447500.9781 0.054695666 0.081143835 5.11E-06 5.291397713 -0.213338846 SPS(ph)PASGR ddPTM_HeLa_A485_30min_R1 1 SPSPASGR 8 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.05)PS(0.948)PAS(0.001)GR 68.657 0.012256 0 128870 141460 116620 151850 107710 153630 119180 185250 165240 189040 TRUE FALSE FALSE 157536.6869 158002.5165 159762.591 160145.181 96986.01421 161673.8292 93716.21939 139817.147 198402.1523 141915.807 1.110071459 1.113353895 1.125756139 1.128452033 0.683405297 1.139223548 0.660364912 0.985211936 1.398027158 1 17.11467576 SPS(ph)PASGR ddPTM_HeLa_A486_30min_R1 1 SPSPASGR 8 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.004)PS(0.996)PASGR 81.972 0.0076685 210540000 122270 111190 141070 32251 144340 160580 100550 107180 155520 122630 TRUE FALSE FALSE 113699.5044 102378.8995 195696.082 75081.95788 126235.5313 140769.2723 75391.32649 82777.45372 169000.5988 91922.64981 1.236904121 1.113750525 2.128921244 0.816794969 1.373279943 1.53138832 0.820160501 0.900512049 1.838508781 1 16.48813277 -6.736166798 24.98420656 1.131504166 1.365266483 0.069253703 0.40728724 662.5738128 655013.0926 0.153681885 0.118994127 1.84E-07 6.736166798 0.233762317 SPS(ph)PAVPLR ddPTM_HeLa_A486_30min_R1 1 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 S(0.414)PS(0.586)PAVPLR 93.096 0.0030603 587390000 679530 799800 580840 191860 804770 689440 698570 774790 710220 692900 TRUE FALSE FALSE 631898.4561 736420.9352 805756.8034 446659.7761 703828.2424 604383.9025 523780.3973 598387.2305 771782.4414 519393.33 1.216608723 1.417848272 1.551342224 0.859964405 1.355096806 1.163634316 1.008446522 1.152088785 1.485930598 1 18.98646796 -5.237797649 24.99760974 1.1564479 1.397524571 0.275990685 0.184167657 1084.175751 1146352.904 0.049011756 0.084829037 5.78E-06 5.237797649 0.241076671 SPS(ph)PGLFR ddPTM_HeLa_A485_30min_R1 6 SPSPGLFR 8 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 S(0.005)PS(0.995)PGLFR;S(0.197)PS(0.803)PGLFR;S(0.223)PS(0.777)PGLFR;S(0.008)PS(0.992)PGLFR;S(0.416)PS(0.584)PGLFR;S(0.246)PS(0.754)PGLFR ;;;;; 150.35 0.00023295 3976167000 2904280 4174090 3972830 3002470 4756540 4120350 4828900 5075930 3813490 4250040 TRUE FALSE FALSE 3550327.066 4662213.516 5442545.14 3166487.333 4282962.176 4336085.155 3797166.067 3831050.209 4578822.464 3190583.244 1.112751743 1.461241773 1.70581512 0.992447804 1.342375938 1.359025865 1.190116595 1.200736641 1.435105156 1 21.60538874 -13.2471444 0.203576042 2.78E-10 1.363808484 0.180217106 0.192447893 176.5743734 2.312383759 72.95252354 0.455831961 5.66E-14 13.2471444 1.363808483 SPS(ph)PGLFR ddPTM_HeLa_A486_30min_R1 6 SPSPGLFR 8 0 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 S(0.017)PS(0.983)PGLFR;S(0.001)PS(0.999)PGLFR;S(0.007)PS(0.993)PGLFR;S(0.012)PS(0.988)PGLFR;S(0.437)PS(0.563)PGLFR;S(0.378)PS(0.622)PGLFR ;;;;; 152.38 0.00019271 3147167000 3810360 4343480 3674560 1632480 4956490 3909520 4461920 4610280 3642770 4287840 TRUE FALSE FALSE 3543273.441 3999286.826 5097448.04 3800495.941 4334800.807 3427203.171 3345500.423 3560619.886 3958528.237 3214136.955 1.102402757 1.244280154 1.585946122 1.182431239 1.348667113 1.066290335 1.040870526 1.107799679 1.231599117 1 21.61599997 -6.265111032 24.89226254 1.093021816 1.300213317 0.375311613 0.131007867 341.9882764 2318526.226 0.046156531 0.042271978 5.43E-07 6.265111032 0.207191501 SPS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_HeLa_A485_30min_R1 1 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 S(0.052)PS(0.936)PGPNHT(0.001)S(0.001)NS(0.004)S(0.006)NASNATVVPQNSSAR 170.94 3.07E-14 519640000 23667 75428 102340 9903.5 102450 54930 55426 64097 48638 17962 TRUE FALSE FALSE 28931.6425 84248.64846 140199.8247 10444.50313 92249.71828 57806.04986 43583.78231 48377.11025 58399.20047 13484.40397 2.145563317 6.247858539 10.39718367 0.77456172 6.84121586 4.28688209 3.232162313 3.587634305 4.33086999 1 13.71900413 -8.132532222 0.335784392 0.616163594 5.752617515 0.183778295 2.507530399 3.290626681 0.983051193 5.796565903 2.884320525 7.37E-09 8.132532222 5.136453921 SPS(ph)PHSCHR ddPTM_HeLa_A485_30min_R1 1 SPSPHSCHR 9 0 D3TTY5;A0A087WU80;P21580 D3TTY5 TNFAIP3 Tumor necrosis factor alpha-induced protein 3;A20p50;A20p37 1 0 S(0.09)PS(0.91)PHSCHR 117.09 0.00043966 138960000 136860 188010 73049 77067 61825 228690 95929 194750 175040 125540 TRUE FALSE FALSE 167304.0348 209996.134 100072.8649 81276.97507 55669.48592 240663.8548 75432.98548 146987.2571 210168.9224 94245.18839 1.77519975 2.228189445 1.061835269 0.8623992 0.590687831 2.553593015 0.80039084 1.559626116 2.230022837 1 16.52413134 -4.759078413 24.99967912 1.333655787 2.001694676 0.162709061 0.607375675 109.0810914 1154960.799 0.157640573 0.378342921 1.74E-05 4.759078413 0.668038889 SPS(ph)PISISSSETSSIMQK ddPTM_HeLa_A486_30min_R1 1 SPSPISISSSETSSIMQK 18 0 Q5VT06 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 S(0.286)PS(0.712)PIS(0.002)ISSSETSSIMQK 92.977 0.00018497 0 20278 23751 15268 11179 22667 24624 29414 24743 15946 24319 TRUE FALSE FALSE 18856.61692 21868.88426 21180.17849 26025.27696 19823.8935 21586.14124 22054.30609 19109.55904 17328.21212 18229.36411 1.034408924 1.199651514 1.161871493 1.427656873 1.087470379 1.184141208 1.209823116 1.048284456 0.950565912 1 14.15397662 -7.41485328 3.353391917 0.978552508 1.191455304 0.44643642 0.097147479 0.232732373 4.813114492 0.064268432 0.02633808 3.85E-08 7.41485328 0.212902795 SPS(ph)PLGTSVR ddPTM_HeLa_A486_30min_R1 2 SPSPLGTSVR 10 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 S(0.008)PS(0.991)PLGTSVR;S(0.114)PS(0.886)PLGTSVR ; 171.74 2.26E-07 535400000 354430 411000 346610 172200 456670 349210 405270 395350 337440 358030 TRUE FALSE FALSE 329586.2873 378430.8632 480826.6745 400890.3025 399390.1903 306128.0207 303867.1595 305337.4354 366689.5709 268376.9576 1.228072224 1.410072111 1.79160938 1.49375828 1.488168708 1.140664323 1.132240123 1.137718522 1.366322855 1 18.03390128 -6.258042772 22.94267772 1.162549734 1.496137931 0.529273994 0.153817826 79.66156649 538081.3809 0.053807751 0.051638954 5.52E-07 6.258042772 0.333588198 SPS(ph)PLTGK ddPTM_HeLa_A486_30min_R1 2 SPSPLTGK 8 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 S(0.002)PS(0.998)PLTGK;S(0.015)PS(0.984)PLT(0.001)GK ; 94.087 0.0032568 631510000 1166780 1252630 727370 424030 1152330 1312940 1315970 1377940 1018180 1578300 TRUE FALSE FALSE 1084994.747 1153367.037 1009027.144 987163.2693 1007794.026 1150962.812 986700.3871 1064213.142 1106436.662 1183083.407 0.917090664 0.974882269 0.852879127 0.834398711 0.851836836 0.972850101 0.83400746 0.899525034 0.93521442 1 20.17412036 -8.043039874 2.460221392 0.999564266 0.890972551 0.319200589 0.04889555 0.401020703 5.669262048 0.048772636 0.013285759 9.06E-09 8.043039874 -0.108591715 SPS(ph)PLVSLQAVK ddPTM_HeLa_A485_30min_R1 3 SPSPLVSLQAVK 12 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 S(0.005)PS(0.995)PLVSLQAVK;S(0.008)PS(0.992)PLVSLQAVK;S(0.004)PS(0.996)PLVSLQAVK ;; 108.97 0.00046154 1077120000 533600 700508 576957 634420 796000 743139 920073 958735 650269 865840 TRUE FALSE FALSE 652297.4791 782426.317 790397.4035 669076.7582 716747.4451 782048.6089 723491.8872 723603.738 780772.0237 650002.0226 1.003531461 1.20372905 1.215992222 1.029345656 1.102684946 1.203147962 1.113060978 1.113233056 1.201183991 1 19.31008468 -10.71235542 5.03764748 0.995252973 1.133497701 0.235334728 0.071194799 0.003845028 0.000219547 0.069828687 0.01640358 1.94E-11 10.71235542 0.138244728 SPS(ph)PLVSLQAVK ddPTM_HeLa_A486_30min_R1 2 SPSPLVSLQAVK 12 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 S(0.001)PS(0.999)PLVSLQAVK;S(0.001)PS(0.999)PLVSLQAVK ; 222.56 4.77E-23 1126990000 675540 755510 534980 245360 736220 598750 778560 718030 562850 782690 TRUE FALSE FALSE 628188.1345 695640.6361 742138.5833 571210.4798 643876.4226 524882.3126 583756.0532 554550.2435 611638.2912 586699.3295 1.070715617 1.185685071 1.264938523 0.973600021 1.097455528 0.894635951 0.994983331 0.945203472 1.042507227 1 19.16226182 -5.2760849 24.79826695 0.990726444 1.17497027 0.605643256 0.066972861 449.5491724 761190.0628 0.018728621 0.027920024 5.30E-06 5.2760849 0.184243827 SPS(ph)PPDGS(ph)PAATPEIR ddPTM_HeLa_A485_30min_R1 1 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 SPS(1)PPDGS(1)PAATPEIR 310.2 8.44E-78 1176100000 482040 571180 497590 598770 737990 587820 681370 615260 526830 744390 TRUE FALSE FALSE 589268.135 637974.5324 681669.2474 631479.2889 664513.1244 618597.3463 535789.7332 464366.5203 632559.9486 558827.2725 1.054472758 1.14163099 1.219821009 1.130008001 1.189120784 1.106956258 0.958775206 0.830966102 1.1319418 1 19.0920429 -6.678819326 4.250719701 0.96602467 1.149389827 0.493219782 0.07953198 0.167270993 5.644320056 0.031210066 0.023314789 2.09E-07 6.678819326 0.183365158 SPS(ph)PPDGSPAATPEIR ddPTM_HeLa_A485_30min_R1 2 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 SPS(1)PPDGSPAATPEIR;SPS(1)PPDGSPAATPEIR ; 323.02 2.57E-102 2328100000 346891 387724 319699 404663 439430 387272 408590 430310 331475 479780 TRUE FALSE FALSE 424055.7062 433064.949 437968.9639 426768.715 395678.8063 407548.9631 321291.4086 324775.7978 397998.992 360179.6757 1.177344905 1.202358096 1.215973564 1.184877282 1.098559505 1.131515714 0.892030923 0.901704954 1.10500125 1 18.45835725 -6.423141209 1.870499405 0.969832829 1.188766775 0.666543262 0.065810957 0.200965499 1.396099462 0.02908842 0.023727756 3.77E-07 6.423141209 0.218933946 SPS(ph)PPDGSPAATPEIR ddPTM_HeLa_A486_30min_R1 2 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 SPS(1)PPDGSPAATPEIR;SPS(1)PPDGSPAATPEIR ; 292.27 2.04E-67 3783300000 699847 735644 629758 262158 759172 661359 720270 811310 644494 718091 TRUE FALSE FALSE 650791.3393 677348.8903 873617.1631 610317.0727 663949.5688 579767.2508 540050.8278 626592.4238 700359.2588 538276.3396 1.209028321 1.258366457 1.622990087 1.133835965 1.233473441 1.077081061 1.003296612 1.164072016 1.301114701 1 19.03798749 -5.420980509 24.96918507 1.133970089 1.357198722 0.388272011 0.133929905 40.77251929 9981.706725 0.038309863 0.056822698 3.79E-06 5.420980509 0.223228633 SPS(ph)PPLPTHIPPEPPRT(ph)PPFPAK ddPTM_HeLa_A485_30min_R1 4 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 S(0.428)PS(0.571)PPLPT(0.001)HIPPEPPRT(1)PPFPAK;S(0.117)PS(0.883)PPLPTHIPPEPPRT(1)PPFPAK;S(0.412)PS(0.587)PPLPT(0.002)HIPPEPPRT(1)PPFPAK;S(0.128)PS(0.872)PPLPTHIPPEPPRT(1)PPFPAK ;;; 183.64 2.06E-19 2088620000 1971770 2070390 1610460 2123480 2418850 2288220 2953560 3104710 1898100 3042090 TRUE FALSE FALSE 2410383.434 2312504.101 2206236.171 2239480.335 2178020.801 2408027.661 2322507.778 2343275.005 2279031.26 2283752.949 1.055448417 1.012589432 0.966057284 0.980614097 0.953702458 1.054416881 1.016969799 1.026063264 0.997932487 1 21.12297516 -6.267593816 24.99851644 1.020573769 0.992471993 0.152789556 0.02972634 1010.283082 4103625.235 0.01086214 0.009841052 5.40E-07 6.267593816 -0.028101776 SPS(ph)PPLPTHIPPEPPRT(ph)PPFPAK ddPTM_HeLa_A486_30min_R1 7 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 S(0.144)PS(0.854)PPLPT(0.002)HIPPEPPRT(1)PPFPAK;S(0.41)PS(0.59)PPLPTHIPPEPPRT(1)PPFPAK;S(0.106)PS(0.894)PPLPTHIPPEPPRT(1)PPFPAK;S(0.065)PS(0.934)PPLPT(0.002)HIPPEPPRT(0.999)PPFPAK;S(0.153)PS(0.792)PPLPT(0.057)HIPPEPPRT(0.997)PPFPAK;S(0.402)PS(0.598)PPLPTHIPPEPPRT(1)PPFPAK;S(0.157)PS(0.843)PPLPTHIPPEPPRT(1)PPFPAK ;;;;;; 182.09 2.30E-19 2799320000 2342570 2382740 1626833 816775 2595220 2536310 2714680 2774110 2135040 2844070 TRUE FALSE FALSE 2178367.94 2193923.005 2256786.306 1901493.478 2269703.308 2223405.86 2035438.351 2142505.711 2320106.986 2131896.36 1.021798236 1.029094587 1.058581621 0.891925852 1.064640547 1.042923991 0.954754832 1.004976485 1.088283197 1 21.02370587 SPS(ph)PPTQHTGQPPGQPSAPSQLSAPR ddPTM_HeLa_A485_30min_R1 4 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-2;I3L460;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 S(0.395)PS(0.599)PPT(0.006)QHTGQPPGQPSAPSQLSAPR;S(0.003)PS(0.991)PPT(0.006)QHTGQPPGQPSAPSQLSAPR;S(0.136)PS(0.476)PPT(0.386)QHT(0.003)GQPPGQPSAPSQLSAPR;S(0.179)PS(0.717)PPT(0.104)QHTGQPPGQPSAPSQLSAPR ;;; 168.34 5.65E-14 51244600000 222748 299265 290803 191771 381802 266426 353849 300369 260306 351380 TRUE FALSE FALSE 272297.5241 334261.4385 398383.131 202246.9641 343788.4523 280375.6534 278246.2705 226703.0318 312547.0265 263787.4327 1.032261171 1.267162105 1.510243028 0.76670432 1.303278359 1.062884803 1.054812459 0.859415589 1.184844264 1 18.00901631 -5.853647135 0.88049797 1.018589708 1.226559498 0.112211582 0.195739197 1.264769464 2.142734296 0.10252255 0.149957628 1.40E-06 5.853647135 0.20796979 SPS(ph)PPTQHTGQPPGQPSAPSQLSAPR ddPTM_HeLa_A486_30min_R1 6 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-2;I3L460;Q68EM7-6;Q68EM7-5;Q68EM7;Q68EM7-3;Q68EM7-7 Q68EM7-2;Q68EM7-6 ARHGAP17 Rho GTPase-activating protein 17 1 0 S(0.204)PS(0.773)PPT(0.023)QHTGQPPGQPSAPSQLSAPR;S(0.034)PS(0.952)PPT(0.014)QHTGQPPGQPSAPSQLSAPR;S(0.02)PS(0.972)PPT(0.008)QHTGQPPGQPSAPSQLSAPR;SPS(1)PPTQHTGQPPGQPSAPSQLSAPR;S(0.242)PS(0.752)PPT(0.006)QHTGQPPGQPSAPSQLSAPR;S(0.218)PS(0.769)PPT(0.012)QHT(0.001)GQPPGQPSAPSQLSAPR ;;;;; 216.89 3.83E-38 50407800000 366217.8 386492 310841.9 60852.2 427152 310726.1 374479.8 368309 297392.1 315633.9 TRUE FALSE FALSE 340547.8234 355864.9663 431208.2083 141666.9969 373574.6131 272391.873 280780.9932 284453.0808 323170.2867 236597.117 1.439357452 1.504096799 1.822542108 0.598768906 1.578948289 1.151289908 1.186747314 1.202267739 1.365909656 1 17.85207297 -5.216952819 24.99992896 1.182126055 1.580208507 0.374710552 0.255040388 500.0573208 281014.4175 0.065558108 0.113549229 6.07E-06 5.216952819 0.398082452 SPS(ph)PQGTKAPR ddPTM_HeLa_A485_30min_R1 4 SPSPQGTKAPR 11 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 S(0.012)PS(0.988)PQGTKAPR;S(0.077)PS(0.923)PQGTKAPR;S(0.077)PS(0.923)PQGTKAPR;S(0.004)PS(0.996)PQGTKAPR ;;; 109.07 0.00029039 406664000 401708 939180 477254 224139 778320 1018690 1115470 1915340 491715 335403 TRUE FALSE FALSE 491066.5587 1049008.931 653810.1148 236383.146 700827.728 1072027.033 877140.7219 1445599.862 590397.6902 251793.2047 1.950277249 4.166152666 2.596615407 0.938798751 2.783346472 4.257569359 3.483575829 5.741218725 2.344772135 1 17.94187982 -6.061111316 8.040604097 3.656519056 2.466925831 0.077684456 1.379215175 0.653408807 79.33191845 0.445534312 0.447561118 8.69E-07 6.061111316 -1.189593225 SPS(ph)PQGTKAPR ddPTM_HeLa_A486_30min_R1 1 SPSPQGTKAPR 11 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 S(0.008)PS(0.992)PQGTKAPR 85.287 0.00093821 0 147550 94284 70463 53308 158380 80355 126490 145610 58270 149750 TRUE FALSE FALSE 137207.5069 86812.59246 97748.16066 124103.718 138514.5036 70441.61709 94840.86413 112457.7816 63320.89052 112251.6253 1.222320894 0.773374927 0.870795059 1.105585044 1.233964348 0.62753316 0.844895242 1.001836556 0.564097761 1 16.77637681 -6.266588875 24.99934003 0.810113757 1.020437545 0.280038597 0.18571948 677.5618657 3289360.898 0.065029974 0.059083068 5.41E-07 6.266588875 0.210323788 SPS(ph)PSFR ddPTM_HeLa_A486_30min_R1 1 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 S(0.064)PS(0.935)PS(0.001)FR 115.71 0.0024789 530630000 539230 829320 744930 247300 972410 811750 870920 925260 815720 907580 TRUE FALSE FALSE 501432.7616 763601.6629 1033386.846 575726.8979 850441.2704 711604.5383 653006.6043 714598.4963 886427.2664 680316.0606 0.737058539 1.122421926 1.518980523 0.846263863 1.250067902 1.045991091 0.959857693 1.050391925 1.302963898 1 19.37584562 -4.261628482 10.99911353 1.123856576 0.736546607 0.284633729 0.182999016 0.082950646 572.2291006 0.044463269 0.247587966 5.47E-05 4.261628482 -0.387309969 SPS(ph)PSLSSLLLPSSPGPR ddPTM_HeLa_A485_30min_R1 1 SPSPSLSSLLLPSSPGPR 18 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 S(0.005)PS(0.995)PSLSSLLLPSSPGPR 94.882 0.00055918 50038000 7967 11368 18000 14096 10529 10126 10807 12444 10029 15674 TRUE FALSE FALSE 9739.231664 12697.38871 24658.94904 14866.02879 9480.69579 10656.1817 8497.996165 9392.089489 12041.72831 11766.76026 0.827690159 1.079089608 2.095644723 1.263391831 0.805718446 0.905617304 0.722203561 0.798188225 1.023368204 1 13.52242954 -5.696143528 5.464807738 0.859673687 1.36400705 0.319723169 0.31338962 0.236759108 13.41602096 0.098694954 0.126772764 2.01E-06 5.696143528 0.504333364 SPS(ph)PSLSSLLLPSSPGPR ddPTM_HeLa_A486_30min_R1 2 SPSPSLSSLLLPSSPGPR 18 0 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 S(0.007)PS(0.992)PS(0.001)LSSLLLPSSPGPR;S(0.001)PS(0.999)PSLSSLLLPSSPGPR ; 126.77 1.12E-05 157527000 64650 59455 62339 29710 72704 67868 53793 66295 75609 78913 TRUE FALSE FALSE 60118.36885 54743.56927 86478.3303 69166.38146 63584.78638 59495.13619 40333.42244 51201.07571 82162.849 59152.67116 1.016325513 0.925462337 1.461951398 1.169285851 1.074926713 1.005789511 0.681852935 0.86557504 1.388996429 1 15.8521557 -6.145606558 3.029516999 0.960114281 1.147545592 0.10117989 0.209712988 0.572334646 10.0543696 0.07753132 0.077482702 7.15E-07 6.145606558 0.187431311 SPS(ph)PSVR ddPTM_HeLa_A485_30min_R1 4 SPSPSVR 7 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.004)PS(0.989)PS(0.007)VR;S(0.134)PS(0.845)PS(0.021)VR;S(0.009)PS(0.988)PS(0.003)VR;SPS(0.918)PS(0.081)VR ;;; 143.73 0.00025983 1414570000 895480 1295670 1179910 971720 1411650 1250340 1421270 1575730 1123480 1325610 TRUE FALSE FALSE 1094676.437 1447187.336 1616407.809 1024802.603 1271101.169 1315805.869 1117604.054 1189279.747 1348952.131 995159.823 1.100000634 1.454226047 1.624269561 1.029786954 1.277283447 1.322205578 1.123039765 1.195064068 1.355513054 1 19.92456872 -14 0.124609075 0.085723635 1.404334468 0.191179725 0.168605562 245.0496199 1.952463211 56.2241987 1.487311767 1.00E-14 14 1.318610834 SPS(ph)PSVR ddPTM_HeLa_A486_30min_R1 2 SPSPSVR 7 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.016)PS(0.984)PSVR;S(0.012)PS(0.981)PS(0.007)VR ; 125.47 0.0017547 1901100000 516700 586860 532410 270441 609660 531140 581010 576770 542440 587840 TRUE FALSE FALSE 480481.9982 540355.0763 738573.4104 629600.3153 533190.7579 465613.347 435635.1527 445452.0618 589459.136 440641.0378 1.09041591 1.226293127 1.676133966 1.428828142 1.210034273 1.056672682 0.98863954 1.010918239 1.337730909 1 18.74924434 -5.995084255 3.753874391 1.076332753 1.367622595 0.37327251 0.168260765 0.253232712 7.883311159 0.059376112 0.064501231 1.01E-06 5.995084255 0.291289842 SPS(ph)PTLSYYSSGLHNIVTK ddPTM_HeLa_A485_30min_R1 2 SPSPTLSYYSSGLHNIVTK 19 0 Q9H706-3 Q9H706-3 GAREM GRB2-associated and regulator of MAPK protein 1 0 S(0.014)PS(0.984)PT(0.002)LSYYSSGLHNIVTK;S(0.03)PS(0.795)PT(0.169)LS(0.006)YYSSGLHNIVTK ; 249.85 2.08E-46 397320000 260270 325440 298890 196041 401530 318730 376460 420210 323380 321250 TRUE FALSE FALSE 318166.1636 363497.377 409461.8489 206750.2234 361552.2633 335418.2099 296026.2456 317152.8386 388279.3998 241168.2872 1.319270321 1.507235389 1.697826251 0.857286113 1.499170009 1.390805623 1.227467546 1.315068587 1.609993604 1 17.87968068 -10.44839516 2.973974946 0.991412038 1.375506761 0.210071264 0.221141716 40743490.24 47349467.98 2913990.059 0.057528077 3.56E-11 10.44839516 0.384094723 SPS(ph)PTLSYYSSGLHNIVTK ddPTM_HeLa_A486_30min_R1 2 SPSPTLSYYSSGLHNIVTK 19 0 Q9H706-3 Q9H706-3 GAREM GRB2-associated and regulator of MAPK protein 1 0 S(0.001)PS(0.995)PT(0.004)LSYYSSGLHNIVTK;SPS(1)PTLSYYSSGLHNIVTK ; 223.89 6.03E-35 358790000 373120 350590 297830 50995 443640 324020 356170 364930 348880 254970 TRUE FALSE FALSE 346966.2148 322807.9716 413157.7522 118718.9371 387994.5344 284045.7068 267052.4988 281843.4054 379121.1993 191123.8524 1.815399859 1.688998874 2.161727837 0.621162328 2.030068615 1.486186592 1.397274571 1.474663689 1.983641469 1 17.54414831 -11.10307421 2.063067907 7.67E-05 1.61286631 0.170122123 0.415295283 4657698.536 1227616.94 21834489.87 0.102628083 7.89E-12 11.10307421 1.612789642 SPS(ph)PVLR ddPTM_HeLa_A485_30min_R1 3 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(0.46)PS(0.54)PVLR;S(0.357)PS(0.643)PVLR;S(0.036)PS(0.964)PVLR ;; 107.69 0.0032404 7080000000 2133420 2649500 2648570 2497310 3040660 2492710 3070410 2775790 2518950 3154150 TRUE FALSE FALSE 2607991.919 2959335.977 3628386.259 2633731.722 2737921.214 2623224.441 2414391.821 2095023.15 3024480.16 2367878.453 1.101404473 1.249783735 1.532336364 1.11227488 1.156276079 1.107837456 1.019643478 0.884768028 1.27729536 1 21.1751636 -5.762125828 1.865580708 1.052713347 1.285293097 0.30667976 0.141170318 0.40214494 2.887849209 0.049677438 0.065225904 1.73E-06 5.762125828 0.232579751 SPS(ph)PVLR ddPTM_HeLa_A486_30min_R1 3 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(0.046)PS(0.954)PVLR;S(0.412)PS(0.588)PVLR;S(0.477)PS(0.523)PVLR ;; 116.05 0.002447 6551980000 2569580 2792310 2478410 923190 3333530 2711720 2858240 3073680 2570500 2882900 TRUE FALSE FALSE 2389465.711 2571037.186 3438116.726 2149232.975 2915407.583 2377175.557 2143078.121 2373870.162 2793313.01 2161003.075 1.105720644 1.189742493 1.590981876 0.994553409 1.349099229 1.100033398 0.991705262 1.098503833 1.292600201 1 21.04326969 -6.321099343 12.42460866 1.096108898 1.248073001 0.168981448 0.165679901 2.786398758 577.686503 0.057834114 0.051004317 4.77E-07 6.321099343 0.151964102 SPS(ph)PVQGK ddPTM_HeLa_A485_30min_R1 4 SPSPVQGK 8 0 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 S(0.411)PS(0.589)PVQGK;S(0.052)PS(0.948)PVQGK;S(0.004)PS(0.996)PVQGK;S(0.053)PS(0.947)PVQGK ;;; 102.53 0.0018042 4299500000 4843380 4922020 3532770 6176820 5504810 5433220 7116750 7108270 4691940 8113720 TRUE FALSE FALSE 5920773.172 5497607.423 4839688.634 6514244.036 4956731.788 5717694.998 5596198.224 5364955.637 5633569.321 6091118.926 0.97203375 0.90256117 0.794548373 1.069465909 0.813763751 0.938693706 0.918747162 0.880783269 0.924882503 1 22.53827584 -8.033320743 20.96908198 1.000000003 0.909851155 0.115134394 0.073266761 1102.596221 693877.3272 0.066185912 0.017089129 9.26E-09 8.033320743 -0.090148848 SPS(ph)PVQGK ddPTM_HeLa_A486_30min_R1 3 SPSPVQGK 8 0 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 S(0.472)PS(0.528)PVQGK;S(0.252)PS(0.748)PVQGK;S(0.028)PS(0.972)PVQGK ;; 114.89 0.0010061 1945000000 4257450 3621320 2536880 1598550 3840270 4640570 4840740 4326650 3867310 5515390 TRUE FALSE FALSE 3959024.74 3334353.415 3519227.876 3721505.186 3358587.528 4068063.655 3629535.652 3341566.245 4202531.545 4134300.445 0.957604507 0.806509701 0.85122693 0.900153541 0.812371421 0.983978719 0.877908052 0.808254332 1.016503663 1 21.9792118 -7.777441337 24.99297425 1.008251993 0.874205667 0.46268707 0.057543468 235.1372065 367243.078 0.053054005 0.013878082 1.67E-08 7.777441337 -0.134046327 SPS(ph)SDLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_HeLa_A486_30min_R1 1 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 S(0.097)PS(0.451)S(0.451)DLDTDAEGDDFELLDQSELSQLDPASSR 226.4 2.60E-39 77206000 15236 15913 12435 4516.9 19214 13668 17553 16942 13683 15789 TRUE FALSE FALSE 14168.03508 14651.99593 17250.16502 10515.57147 16804.00096 11981.78113 13161.05374 13084.67644 14869.05346 11835.33163 1.197096585 1.23798778 1.457514294 0.888489803 1.419816654 1.012373924 1.112013939 1.105560609 1.256327572 1 13.53081251 -5.24521453 24.9957091 1.126396342 1.291578342 0.234086611 0.151171689 1305.061356 2010551.5 0.038886838 0.06707432 5.69E-06 5.24521453 0.165182 SPS(ph)TLLPK ddPTM_HeLa_A485_30min_R1 3 SPSTLLPK 8 0 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 S(0.33)PS(0.67)T(0.001)LLPK;S(0.229)PS(0.771)TLLPK;S(0.349)PS(0.636)T(0.016)LLPK ;; 144.66 0.00034581 9178478000 1607180 1595120 1142910 1885240 1762490 1565440 1943320 1830840 1387370 2188510 TRUE FALSE FALSE 1964691.646 1781655.408 1565719.969 1988225.888 1587010.307 1647404.018 1528113.807 1381823.619 1665802.433 1642954.734 1.195828227 1.084421483 0.952990327 1.210152567 0.965948894 1.002708099 0.930100979 0.841060068 1.013906469 1 20.6478613 -5.897977339 9.053972945 0.950169639 1.097505644 0.455611855 0.080646899 0.26680138 21.51070355 0.025136385 0.02852972 1.26E-06 5.897977339 0.147336005 SPS(ph)TLLPK ddPTM_HeLa_A486_30min_R1 6 SPSTLLPK 8 0 E7EVA0;B5MEG9;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 S(0.336)PS(0.656)T(0.008)LLPK;S(0.193)PS(0.807)TLLPK;S(0.12)PS(0.88)T(0.001)LLPK;S(0.343)PS(0.655)T(0.002)LLPK;S(0.184)PS(0.769)T(0.047)LLPK;S(0.012)PS(0.982)T(0.006)LLPK ;;;;; 131.11 0.00053982 21993231000 3982240 3908580 2215540 1475974 3147700 3413960 4187550 3812900 3044530 4092910 TRUE FALSE FALSE 3703105.54 3598849.886 3073456.422 3436142.064 2752886.115 2992780.326 3139780.699 2944785.905 3308432.312 3068018.696 1.207002273 1.173020846 1.00177239 1.119987329 0.897284661 0.975476561 1.023390341 0.959833103 1.078361197 1 21.54887584 -4.640315537 1.268449492 0.996074668 1.249564489 0.592017224 0.05978857 0.507667831 1.136331684 0.018059436 0.142164377 2.29E-05 4.640315537 0.253489821 SPS(ph)VPKSPT(ph)PKSPPSR ddPTM_HeLa_A485_30min_R1 1 SPSVPKSPTPKSPPSR 16 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.065)PS(0.458)VPKS(0.455)PT(0.812)PKS(0.19)PPS(0.02)R 63.69 0.015341 623640000 340380 288810 145450 578520 450440 408260 824430 783080 257860 820600 TRUE FALSE FALSE 416096.3567 322583.8172 199258.0077 610123.0827 405592.612 429635.8623 648283.7955 591028.4022 309610.1368 616039.522 0.675437763 0.523641432 0.323450039 0.990396007 0.658387323 0.69741607 1.052341242 0.959400138 0.502581613 1 19.23266338 -5.264303357 24.99920198 0.831212997 0.509122914 0.403371354 0.183649868 257.6788187 2249242.23 0.051463947 0.08031106 5.44E-06 5.264303357 -0.322090083 SPS(ph)VPKSPTPKS(ph)PPSR ddPTM_HeLa_A486_30min_R1 1 SPSVPKSPTPKSPPSR 16 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.028)PS(0.471)VPKS(0.412)PT(0.31)PKS(0.773)PPS(0.006)R 66.045 0.0085499 197140000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SPSDLHIS(ph)PLAK ddPTM_HeLa_A485_30min_R1 3 SPSDLHISPLAK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 SPSDLHIS(1)PLAK;SPSDLHIS(1)PLAK;SPSDLHIS(1)PLAK ;; 174.83 4.75E-11 1553550000 2298560 2871080 2317450 2382900 3257980 3079800 3910570 4243130 2547750 3427800 TRUE FALSE FALSE 2809866.742 3206827.831 3174771.192 2513071.793 2933604.072 3241053.566 3075044.773 3202495.715 3059060.056 2573312.544 1.091925949 1.246186686 1.233729342 0.976590193 1.140010792 1.259486949 1.194975239 1.244503207 1.188763511 1 21.29519526 SPSDLHIS(ph)PLAK ddPTM_HeLa_A486_30min_R1 2 SPSDLHISPLAK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 SPSDLHIS(1)PLAK;SPSDLHIS(1)PLAK ; 170.11 1.09E-10 1274540000 2832700 2618300 1659330 408000 2483800 2498500 2925800 2870000 2118800 2728700 TRUE FALSE FALSE 2634142.358 2410816.372 2301867.014 949844.6192 2172258.643 2190260.473 2193733.894 2216563.652 2302459.29 2045415.759 1.287827351 1.178643687 1.125378547 0.464377286 1.062013253 1.070814314 1.072512463 1.08367389 1.125668109 1 20.96396269 -5.008668635 24.92456949 0.981382619 1.212929546 0.239742323 0.181249029 618.5483792 1778505.07 0.050903345 0.098206382 9.80E-06 5.008668635 0.231546928 SPSDSSTAS(ph)TPVAEQIER ddPTM_HeLa_A486_30min_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 SPSDSSTAS(0.589)T(0.411)PVAEQIER 166.9 3.81E-12 384590000 244390 229250 238490 81501 305320 223130 247850 249680 215690 229930 TRUE FALSE FALSE 227259.523 211083.3951 330839.715 189738.4468 267023.9186 195602.4892 185835.3085 192833.3145 234386.1829 172354.0314 1.318562271 1.224708197 1.919535692 1.100864571 1.549275735 1.13488781 1.078218519 1.118821027 1.35991123 1 17.39501552 -6.278487098 23.58804224 1.142034649 1.421330429 0.29228912 0.221089341 529.3928011 732490.121 0.075727735 0.066992274 5.27E-07 6.278487098 0.279295781 SPSDSSTAST(ph)PVAEQIER ddPTM_HeLa_A485_30min_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;D6R9Q9;Q16643-3 Q16643;Q16643-3 DBN1 Drebrin 1 0 SPSDSSTAS(0.326)T(0.674)PVAEQIER 289.1 5.67E-70 423190000 206540 269140 270210 201260 345720 264950 274170 344430 236470 282790 TRUE FALSE FALSE 252484.1104 300613.5818 370171.9234 212254.3242 311298.9029 278822.3723 215591.3397 259958.0025 283927.36 212295.6574 1.189304169 1.416013806 1.743662249 0.999805304 1.46634607 1.313368233 1.015524022 1.22450928 1.337414827 1 17.69571533 -6.547538245 17.40119063 1.163262023 1.369229533 0.209190666 0.200805647 13.28695868 9372.767667 0.076100146 0.058975037 2.83E-07 6.547538245 0.20596751 SPSFGDPQLS(ph)PEAR ddPTM_HeLa_A486_30min_R1 1 SPSFGDPQLSPEAR 14 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 SPSFGDPQLS(1)PEAR 82.59 0.0035288 86802000 75802 100440 76013 27386 91498 91215 83186 83568 86699 83205 TRUE FALSE FALSE 70488.67124 92480.7686 105447.2693 63755.99201 80021.46766 79961.82071 62371.98295 64541.39068 94214.13913 62369.92643 1.130170826 1.482778222 1.690674903 1.0222233 1.283013661 1.28205732 1.000032973 1.034815886 1.51056999 1 15.92856294 -5.275831857 24.99921023 1.166585804 1.439365031 0.2807592 0.199887778 1005.85398 1747129.347 0.056146903 0.083705382 5.30E-06 5.275831857 0.272779227 SPSFGDPQLS(ph)PEARPR ddPTM_HeLa_A485_30min_R1 4 SPSFGDPQLSPEARPR 16 1 O95425-3 O95425-3 SVIL Supervillin 1 0 SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR ;;; 184.7 4.54E-18 4528010000 2564920 3955680 3756230 2666350 4241390 3772850 4276180 5040480 3476670 3831550 TRUE FALSE FALSE 3135477.605 4418262.366 5145815.787 2812005.949 3819102.319 3970390.592 3362539.21 3804294.377 4174405.779 2876415.099 1.090064367 1.536030863 1.788968424 0.977607839 1.327729895 1.380326015 1.169003462 1.322581841 1.451252908 1 21.45584046 -12.63677265 0.275856534 2.50E-12 1.367817248 0.16644276 0.219951737 179.2677416 3.455922142 102.7129287 0.270356248 2.31E-13 12.63677265 1.367817248 SPSFGDPQLS(ph)PEARPR ddPTM_HeLa_A486_30min_R1 2 SPSFGDPQLSPEARPR 16 1 O95425-3 O95425-3 SVIL Supervillin 1 0 SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR ; 174.04 9.61E-13 2677300000 1346050 1428810 1305810 462470 1599750 1242190 1475930 1460190 1250990 1549590 TRUE FALSE FALSE 1251698.846 1315585.892 1811454.603 1076653.532 1399094.438 1088941.227 1106636.703 1127736.613 1359426.82 1161562.578 1.07759915 1.1326001 1.559498074 0.926901015 1.204493382 0.937479606 0.952713805 0.970878913 1.170343162 1 20.14763545 -5.346789908 24.99999923 1.023083054 1.244275243 0.342047661 0.147987665 93.02644509 27246.54084 0.041477508 0.061521097 4.50E-06 5.346789908 0.221192189 SPSGSAFGS(ph)QENLR ddPTM_HeLa_A485_30min_R1 3 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SPSGS(0.001)AFGS(0.999)QENLR;SPS(0.002)GS(0.009)AFGS(0.989)QENLR;SPSGSAFGS(1)QENLR ;; 204.18 6.38E-22 1344910000 219926 391670 378475 218421 441100 335239 378990 419880 347560 358910 TRUE FALSE FALSE 268847.78 437472.3994 518488.6522 230352.7862 397182.5352 352791.5957 298015.6904 316903.7717 417312.104 269440.3422 0.997800766 1.623633624 1.924317078 0.854930573 1.474101955 1.309349568 1.106054453 1.176155616 1.54881077 1 18.03960635 -5.264370346 24.99988107 1.228077948 1.526088785 0.18949098 0.287408375 438.6501847 3741505.01 0.07919568 0.123363012 5.44E-06 5.264370346 0.298010837 SPSLS(ph)PSPPS(ph)PLEK ddPTM_HeLa_A485_30min_R1 1 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 SPS(0.003)LS(0.997)PS(0.289)PPS(0.711)PLEK 91.076 0.0027665 129170000 204510 158350 137610 225420 196130 157700 236180 166780 170280 304650 TRUE FALSE FALSE 250002.5439 176867.655 188517.6654 237734.1238 176602.6085 165956.9281 185718.2136 125876.9435 204453.6341 228706.3617 1.093115828 0.773339464 0.824278188 1.039473157 0.772180569 0.725633196 0.812037812 0.550386717 0.893956918 1 17.80313697 -5.872957086 11.60821422 0.767054751 0.913381329 0.175436844 0.140288977 0.641645845 63.29776842 0.041831752 0.047446511 1.34E-06 5.872957086 0.146326579 SPSLS(ph)PSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 2 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 SPSLS(0.996)PS(0.083)PPS(0.921)PLEK;SPSLS(1)PS(0.062)PPS(0.938)PLEK ; 229.02 8.08E-28 328010000 955000 763990 398010 290420 646160 749610 869550 805920 567150 950820 TRUE FALSE FALSE 888059.4316 703448.65 552130.1311 676112.437 565112.5876 657130.7397 651979.3928 622429.6091 616311.0186 712728.4832 1.245999637 0.986979848 0.774671062 0.948625533 0.792886213 0.921993094 0.914765452 0.873305366 0.864720624 1 19.44299306 -4.335635041 3.189305704 0.882747274 1.271781058 0.734939399 0.064917101 0.128625536 2.107363816 0.015264146 0.111089629 4.62E-05 4.335635041 0.389033784 SPSLSPS(ph)PPSPLEK ddPTM_HeLa_A485_30min_R1 1 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPS(0.555)PPS(0.444)PLEK 182.03 2.34E-17 1900700000 829930 690210 560130 839390 846990 689940 977310 722440 621380 1162400 TRUE FALSE FALSE 1014545.065 770924.0555 767345.396 885243.7503 762660.7016 726064.1915 768499.7346 545260.4573 746085.2664 872635.0724 1.162622381 0.883443813 0.879342832 1.01444897 0.873974386 0.832036454 0.880665652 0.62484362 0.854979693 1 19.73501893 -1 0.588197946 0.834908338 17.55220995 0.393879276 0.103335698 167.709897 1.355595669 0.048500201 3589.676286 0.1 1 16.71730161 SPSLSPSPPS(ph)PLEK ddPTM_HeLa_A485_30min_R1 3 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPS(0.045)PPS(0.955)PLEK;SPSLSPS(0.024)PPS(0.976)PLEK;SPSLSPSPPS(1)PLEK ;; 266.2 4.61E-42 3334280000 1942270 1638500 1363040 2307610 1921500 1523980 2432080 1562200 1423650 2943840 TRUE FALSE FALSE 2374321.261 1830108.322 1867285.217 2433668.891 1730188.713 1603773.236 1912446.24 1179068.001 1709363.497 2209994.865 1.074356008 0.828105237 0.844927401 1.101210202 0.782892639 0.725690933 0.8653623 0.533516172 0.773469443 1 21.07561159 -5.935106661 11.90330469 0.755642064 0.944134232 0.286897508 0.136835726 0.842968313 151.9370763 0.041307327 0.04684617 1.16E-06 5.935106661 0.188492168 SPSLSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 4 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPS(0.127)PPS(0.873)PLEK;SPSLSPS(0.057)PPS(0.943)PLEK;SPSLSPS(0.029)PPS(0.971)PLEK;SPSLSPS(0.003)PPS(0.997)PLEK ;;; 233.47 3.74E-29 4168280000 4579550 3901860 1963090 1514240 3214080 3719320 4320600 4268670 2984940 4828750 TRUE FALSE FALSE 4258547.194 3592662.403 2723251.021 3525227.245 2810940.116 3260468.114 3239540.181 3296787.025 3243677.003 3619599.57 1.176524395 0.99255797 0.752362511 0.973927413 0.776588698 0.90078144 0.894999604 0.910815399 0.896142499 1 21.78739867 -4.400345891 3.516205523 0.884065036 1.177052658 0.590935358 0.072961833 0.156161227 3.150765161 0.017168207 0.093957916 3.98E-05 4.400345891 0.292987622 SPSLSPSPPS(ph)PLEKTPLGER ddPTM_HeLa_A485_30min_R1 2 SPSLSPSPPSPLEKTPLGER 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPSPPS(1)PLEKTPLGER;SPSLSPSPPS(1)PLEKTPLGER ; 161.04 1.44E-13 1019840000 415860 875500 480360 264266 922440 1076540 1469710 2086330 519720 476600 TRUE FALSE FALSE 508366.6223 977882.1092 658065.1534 278702.1824 830598.6347 1132905.97 1155694.452 1574654.296 624023.0368 357792.3912 1.420842463 2.733099231 1.839237417 0.778949439 2.321454159 3.166378039 3.230069953 4.401027901 1.74409253 1 18.44876318 -6.001082649 24.87822409 2.93020206 1.74932033 0.176964824 0.972984465 55.17904199 1268017.154 0.297437421 0.332985675 9.98E-07 6.001082649 -1.18088173 SPSLSPSPPS(ph)PLEKTPLGER ddPTM_HeLa_A486_30min_R1 1 SPSLSPSPPSPLEKTPLGER 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPS(0.002)PPS(0.998)PLEKTPLGER 111.84 1.17E-05 203200000 402290 230440 212220 151220 444380 248140 415800 473030 182140 430510 TRUE FALSE FALSE 374091.5484 212179.0952 294397.2674 352047.8022 388641.7167 217527.0097 311762.4421 365331.3952 197928.0419 322707.4939 1.159227956 0.657496647 0.912272795 1.090919204 1.204315748 0.674068665 0.966083677 1.132082155 0.613335747 1 18.29986755 -7.755976474 24.99690303 0.8066679 0.963151885 0.100162087 0.198950752 309.0288545 1414089.233 0.141443205 0.050007825 1.75E-08 7.755976474 0.156483985 SPSMAVPS(ph)PGWVASPK ddPTM_HeLa_A485_30min_R1 1 SPSMAVPSPGWVASPK 16 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPSMAVPS(1)PGWVASPK 171.78 3.00E-12 84552000 93599 111850 85401 117140 159520 122530 154590 157630 114020 139640 TRUE FALSE FALSE 114419.7746 124929.8845 116994.3837 123539.0616 143637.6287 128945.4813 121560.5836 118970.9953 136902.7681 104830.3179 1.091475987 1.191734291 1.116035762 1.178466918 1.370191673 1.230039973 1.159593771 1.134891105 1.305946323 1 16.67769649 -5.520905172 24.99859557 1.212507806 1.140331243 0.077961871 0.096698257 179.6521954 2275611.335 0.027868317 0.03657689 3.01E-06 5.520905172 -0.072176562 SPSMAVPS(ph)PGWVASPK ddPTM_HeLa_A486_30min_R1 1 SPSMAVPSPGWVASPK 16 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPSMAVPS(1)PGWVASPK 182.15 1.13E-17 81526000 195200 183470 115730 67422 175870 175820 195390 199510 131890 202690 TRUE FALSE FALSE 181517.488 168931.169 160543.7554 156961.8233 153810.7447 154129.116 146501.3554 154085.9283 143322.3314 151935.1047 1.19470407 1.111863972 1.05666005 1.033084642 1.012345007 1.01444045 0.96423638 1.014156199 0.943312815 1 17.21309572 -1.70052335 0.430878487 0.978646567 3.319110854 0.919153167 0.019677396 10.01689386 0.229542908 0.012017893 18.78781605 0.019928594 1.70052335 2.340464287 SPSMAVPSPGWVAS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SPSMAVPSPGWVASPK 16 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPSMAVPS(0.005)PGWVAS(0.995)PK;SPSMAVPSPGWVAS(1)PK ; 130.29 3.56E-07 198660000 262240 275450 197137 423880 358650 342260 443910 492860 230592 547290 TRUE FALSE FALSE 320574.3833 307661.4814 270066.1799 447035.4911 322941.5467 360180.2044 349065.0021 371985.3122 276869.6993 410860.6751 0.780250831 0.748821924 0.657318152 1.088046431 0.786012306 0.876648037 0.849594578 0.905380667 0.673877341 1 18.64828973 SPSMAVPSPGWVAS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SPSMAVPSPGWVASPK 16 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPSMAVPSPGWVAS(1)PK;SPSMAVPSPGWVAS(1)PK ; 113.59 0.00015144 282020000 354690 303770 162114 235442 306410 390480 469210 464310 218788 610380 TRUE FALSE FALSE 329828.0626 279698.1589 224888.8824 548120.8746 267977.2006 342306.5477 351808.6952 358596.7488 237752.72 457536.8751 0.720877552 0.611312823 0.491520781 1.197981855 0.585695307 0.748150731 0.768918779 0.783754859 0.519636193 1 18.8035285 -11.40770507 2.30830566 3.447986828 0.719731824 0.169871301 0.189179643 13728464.27 705476.7435 178632035.2 0.046253299 3.91E-12 11.40770507 -2.728255003 SPSPGGPQLS(ph)PQLPR ddPTM_HeLa_A485_30min_R1 2 SPSPGGPQLSPQLPR 15 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 SPSPGGPQLS(1)PQLPR;SPSPGGPQLS(1)PQLPR ; 102.58 0.00028085 381140000 591060 686930 536450 242990 819490 675450 692350 760780 576560 422433 TRUE FALSE FALSE 722539.2579 767260.488 734905.1785 256263.9284 737898.6982 710815.5176 544423.7665 574197.5121 692270.3035 317128.2274 2.278382041 2.419401434 2.317375481 0.80807669 2.326814942 2.241413586 1.716730709 1.810616219 2.182934989 1 18.27470677 -11.00517651 0.277330199 4.99E-32 2.102525711 0.303739969 0.457699882 44.08873607 1.842096256 30.23073456 0.597158894 9.88E-12 11.00517651 2.102525711 SPSPGGPQLS(ph)PQLPR ddPTM_HeLa_A486_30min_R1 2 SPSPGGPQLSPQLPR 15 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 SPSPGGPQLS(1)PQLPR;SPSPGGPQLS(1)PQLPR ; 100.04 0.00035505 239540000 468400 475750 440310 101434 641020 412880 318880 337410 328420 204440 TRUE FALSE FALSE 435567.5788 438049.8373 610809.8239 236143.4782 560617.2943 361943.0635 239092.8512 260589.1086 356887.71 153246.8933 2.842260416 2.85845819 3.985789276 1.540934848 3.658262051 2.361829696 1.560180739 1.700452799 2.328841403 1 17.2254983 -6.946281682 0.432932135 1.123799432 3.221256846 0.443744591 0.683570318 1.003088849 0.448154154 0.727015378 0.689950671 1.13E-07 6.946281682 2.097457414 SPSPPDGS(ph)PAATPEIR ddPTM_HeLa_A485_30min_R1 4 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 SPSPPDGS(1)PAATPEIR;SPSPPDGS(1)PAATPEIR;SPSPPDGS(1)PAATPEIR;SPSPPDGS(1)PAATPEIR ;;; 318.32 9.55E-85 2456940000 1005140 1221090 1448000 937220 1546280 1284220 1492610 1541860 1252740 1291290 TRUE FALSE FALSE 1228729.925 1363885.853 1983675.456 988417.9554 1392326.934 1351459.773 1173701.68 1163716.417 1504153.427 969395.1674 1.267522231 1.406945175 2.046302192 1.019623358 1.43628417 1.39412679 1.210756686 1.200456178 1.551641145 1 19.88672536 -5.302484383 24.99999696 1.278345435 1.556927065 0.249802826 0.247755318 754.2222245 459385.6372 0.068734968 0.101951634 4.98E-06 5.302484383 0.27858163 SPSPPDGS(ph)PAATPEIR ddPTM_HeLa_A486_30min_R1 6 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-2;O00499;O00499-11;O00499-9;O00499-7;O00499-4;O00499-3;O00499-5;O00499-10;O00499-8 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 SPSPPDGS(1)PAATPEIR;SPSPPDGS(1)PAATPEIR;SPSPPDGS(1)PAATPEIR;SPSPPDGS(1)PAATPEIR;SPSPPDGS(0.999)PAAT(0.001)PEIR;SPSPPDGS(1)PAATPEIR ;;;;; 264.31 6.96E-51 4673480000 1784780 2049780 1808180 618251 2340310 1899120 2036320 2162020 1580800 1930370 TRUE FALSE FALSE 1659676.139 1887347.968 2508355.721 1439319.573 2046766.497 1664825.883 1526811.198 1669775.243 1717825.017 1446992.787 1.146983007 1.304324378 1.733495663 0.99469713 1.414496682 1.150541936 1.055161582 1.153962381 1.187169025 1 20.4646263 -6.396932834 5.624013457 1.11084251 1.322374736 0.246324348 0.184201272 0.357771792 14.92482792 0.065472409 0.057346639 4.01E-07 6.396932834 0.211532226 SPSPS(ph)LSSLLLPSSPGPRPAPSHCSLAPCGEDYEEEGPELAPEAEGRPPR ddPTM_HeLa_A485_30min_R1 1 SPSPSLSSLLLPSSPGPRPAPSHCSLAPCGEDYEEEGPELAPEAEGRPPR 50 2 Q8TER5-4;Q8TER5;Q8TER5-3;Q8TER5-2 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 S(0.272)PS(0.272)PS(0.294)LS(0.08)S(0.08)LLLPSSPGPRPAPSHCSLAPCGEDYEEEGPELAPEAEGRPPR 62.026 0.00080371 130530000 2917.6 6136.5 5816.5 4196.1 6963.7 6172 3152.4 7249.7 3629.6 3923 TRUE FALSE FALSE 3566.610054 6854.110295 7968.265395 4425.322318 6270.369577 6495.156376 2478.863987 5471.699708 4358.027427 2945.068297 1.211044938 2.327317944 2.705630087 1.502621288 2.129108375 2.20543489 0.8417 1.857919462 1.479771261 1 11.52408538 -6.740737022 24.999747 1.366340761 2.041279657 0.355564074 0.469175165 284.5365605 343600.4421 0.178205378 0.137883582 1.82E-07 6.740737022 0.674938896 SPSQDFS(ph)FIEDTEILDSAMYR ddPTM_HeLa_A486_30min_R1 1 SPSQDFSFIEDTEILDSAMYR 21 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.273)PS(0.273)QDFS(0.45)FIEDT(0.004)EILDSAMYR 97.058 0.00035273 14563000 7210.2 11514 10185 2010.7 11441 7158.2 8799.3 10312 9025 6671 TRUE FALSE FALSE 6704.802214 10601.58871 14128.90476 4681.011215 10005.9631 6275.094063 6597.62207 7964.182709 9807.294267 5000.538179 1.340816123 2.120089544 2.82547683 0.936101485 2.000977243 1.254883742 1.319382401 1.592665114 1.961247753 1 12.28786766 -5.27236767 24.99794398 1.473486768 2.097923747 0.288459288 0.470946476 931.7173253 2131256.907 0.130683145 0.195951256 5.34E-06 5.27236767 0.624436979 SPSS(ph)QTPNSRR ddPTM_HeLa_A485_30min_R1 1 SPSSQTPNSRR 11 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 S(0.476)PS(0.004)S(0.52)QTPNSRR 85.837 0.0020057 74918000 16550 15006 12120 30926 20877 28134 23091 32829 21526 26525 TRUE FALSE FALSE 20231.4904 16760.82117 16603.69236 32615.40907 18798.41258 29607.05274 18157.41921 24777.63628 25846.07075 19912.80566 1.01600401 0.841710679 0.833819836 1.637911284 0.94403636 1.486834816 0.911846353 1.244306639 1.297962286 1 14.28140889 SPSSESS(ph)PQHPTPPARPR ddPTM_HeLa_A485_30min_R1 1 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-2;O14733-3 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 0 S(0.025)PS(0.033)S(0.143)ES(0.143)S(0.655)PQHPTPPARPR 102.31 0.00011711 375330000 49992 69502 68171 36770 81352 62670 62937 69608 63061 54265 TRUE FALSE FALSE 61112.54793 77629.65431 93390.28973 38778.65199 73252.30924 65951.30429 49489.9958 52536.52886 75716.76427 40737.73417 1.500145974 1.90559578 2.292476291 0.951909888 1.798143925 1.618924214 1.214844095 1.289628152 1.858639559 1 15.31407812 -8.899477053 0.073618636 5.40E-08 2.577963078 0.215158794 0.363293128 84.80342674 2.081364324 44.53946621 27.36792705 1.26E-09 8.899477053 2.577963024 SPSSESS(ph)PQHPTPPARPR ddPTM_HeLa_A486_30min_R1 1 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-2;O14733-3 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 0 S(0.077)PS(0.061)S(0.237)ES(0.237)S(0.388)PQHPTPPARPR 102.61 2.86E-05 0 68611 68297 77614 4466.2 87910 68020 62297 61607 74533 36816 TRUE FALSE FALSE 63801.72321 62884.89699 107668.2194 10397.53931 76883.50807 59628.38398 46709.63169 47580.43097 80993.58045 27597.03397 2.311905087 2.278683175 3.901441709 0.376762928 2.785933741 2.160680892 1.692559851 1.72411394 2.934865411 1 14.7522256 -10.66604675 0.188156224 2.46E-23 2.534735717 0.139163637 0.879088086 63.36294295 1.984084663 36.6585722 2.892565189 2.16E-11 10.66604675 2.534735717 SPSSQETHDS(ph)PFCLR ddPTM_HeLa_A485_30min_R1 3 SPSSQETHDSPFCLR 15 0 Q8TB45-2;Q8TB45 Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein 1 0 SPSSQETHDS(1)PFCLR;SPSSQETHDS(1)PFCLR;SPSSQETHDS(1)PFCLR ;; 166.57 3.60E-12 1228040000 467950 552760 613650 486680 694060 601880 727780 647430 524110 721060 TRUE FALSE FALSE 572043.8631 617400.4736 840664.6711 513266.0961 624956.9494 633393.5061 572283.8576 488646.7774 629294.0696 541313.0121 1.056770944 1.140560932 1.553010277 0.948187249 1.154520463 1.17010582 1.057214301 0.902706505 1.162532685 1 19.04610354 -6.409529842 0.948414584 1.017992119 1.202679759 0.150781416 0.157528404 1.039888749 1.959909344 0.102012931 0.080758259 3.89E-07 6.409529842 0.184687641 SPSSQETHDS(ph)PFCLR ddPTM_HeLa_A486_30min_R1 4 SPSSQETHDSPFCLR 15 0 Q8TB45-2;Q8TB45 Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein 1 0 SPSSQETHDS(1)PFCLR;SPSSQETHDS(1)PFCLR;SPSSQETHDS(1)PFCLR;SPSSQETHDS(1)PFCLR ;;; 184.97 5.31E-18 1530030000 604330 800390 711070 130361 935930 762800 801820 798370 782840 700970 TRUE FALSE FALSE 561969.5878 736964.1814 986415.3471 303486.9961 818536.9322 668693.4916 601196.1552 616598.5793 850697.2015 525442.5495 1.069516712 1.402559009 1.8773039 0.577583594 1.557804812 1.272629124 1.144171053 1.173484294 1.619010875 1 19.00317351 -10.52867361 2.952409106 0.987971364 1.296697821 0.066666907 0.33587712 74527744.8 84467087.96 7203995.606 0.079065294 2.96E-11 10.52867361 0.308726457 SPSTDIFDMIPFS(ph)PISHQSSMPTR ddPTM_HeLa_A485_30min_R1 1 SPSTDIFDMIPFSPISHQSSMPTR 24 0 H0Y6R1;H7BZV7;Q9UBP9-3;Q9UBP9-4;Q9UBP9 H0Y6R1 GULP1 PTB domain-containing engulfment adapter protein 1 1 0 SPSTDIFDMIPFS(0.934)PIS(0.052)HQS(0.004)S(0.004)MPT(0.006)R 75.773 0.0052127 31172000 13811 36445 46882 8714.9 47360 27132 31590 37470 27784 15436 TRUE FALSE FALSE 16883.2093 40706.92572 64225.60272 9190.97292 42644.67211 28552.58957 24840.53843 28280.42375 33359.99395 11588.08928 1.456945049 3.512824655 5.542380731 0.793139637 3.680043455 2.463960096 2.143626774 2.440473409 2.878817478 1 13.50035508 -9.725694394 0.242040432 2.52E-11 3.217552374 0.158820997 1.234518896 23.84049302 1.553363422 20.210996 2.356671631 1.88E-10 9.725694394 3.217552374 SPSVPKS(ph)PTPK ddPTM_HeLa_A485_30min_R1 4 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPS(0.002)VPKS(0.996)PT(0.002)PK;SPS(0.002)VPKS(0.99)PT(0.008)PK;SPSVPKS(0.843)PT(0.157)PK;SPSVPKS(0.983)PT(0.017)PK ;;; 160.48 3.72E-08 10220200000 11540600 7471400 4439250 18187000 8862900 8897700 15123200 10979600 7481800 23662000 TRUE FALSE FALSE 14107766.66 8345115.237 6081513.308 19180509.76 7980478.556 9363569.814 11892004.77 8286835.885 8983328.633 17763498.87 0.794199767 0.469790062 0.342360103 1.079770934 0.449262762 0.527124182 0.669462974 0.466509213 0.505718423 1 24.08241244 -10.01113894 4.559393306 1.000012433 0.585790456 0.270064224 0.20245685 265358179 490905673 49812.31203 0.049371791 9.75E-11 10.01113894 -0.414221978 SPSVPKS(ph)PTPK ddPTM_HeLa_A486_30min_R1 4 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPSVPKS(0.927)PT(0.073)PK;SPS(0.001)VPKS(0.943)PT(0.056)PK;SPSVPKS(0.987)PT(0.013)PK;SPSVPKS(0.98)PT(0.02)PK ;;; 152 2.64E-07 8396200000 10252400 8629400 3299370 5063860 6006830 10995870 13670990 11531550 6672160 17037610 TRUE FALSE FALSE 9533759.703 7945574.916 4576974.424 11788921.99 5253397.37 9639311.357 10250363.71 8906067.797 7250508.201 12771281.56 0.746499845 0.6221439 0.358380199 0.92308058 0.411344574 0.754764611 0.802610424 0.697351143 0.567719705 1 23.60639997 SPSVPKS(ph)PTPKS(ph)PPSR ddPTM_HeLa_A485_30min_R1 1 SPSVPKSPTPKSPPSR 16 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.008)PS(0.003)VPKS(0.955)PT(0.052)PKS(0.977)PPS(0.006)R 114.87 0.00049152 378470000 406690 326840 209130 685510 581410 519760 1022700 988100 353180 1126800 TRUE FALSE FALSE 497156.7874 365061.0949 286495.8896 722957.6755 523522.7789 546973.8299 804191.7903 745766.9257 424059.9864 845909.4972 0.58771865 0.431560464 0.338683855 0.854651328 0.618887459 0.646610343 0.950683014 0.881615502 0.501306567 1 19.69014379 -5.264320838 24.97678019 0.76912746 0.450544932 0.474333903 0.15723643 220.787422 1913812.889 0.043790533 0.068321209 5.44E-06 5.264320838 -0.318582528 SPSVPKS(ph)PTPKS(ph)PPSR ddPTM_HeLa_A486_30min_R1 2 SPSVPKSPTPKSPPSR 16 2 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 2 0 S(0.18)PS(0.16)VPKS(0.658)PT(0.03)PKS(0.874)PPS(0.098)R;S(0.077)PS(0.249)VPKS(0.674)PT(0.008)PKS(0.824)PPS(0.169)R ; 90.729 0.00065749 4555300000 1850220 1472830 718650 1810380 2070610 2462100 4036100 3758500 1340940 4272400 TRUE FALSE FALSE 1720529.133 1356117.587 996930.5261 4214656.132 1810894.786 2158351.135 3026225.09 2902771.597 1457173.759 3202563.231 0.537235023 0.42344756 0.311291442 1.316025891 0.565451688 0.673944893 0.944938436 0.906390097 0.455002338 1 21.61079562 -5.189824996 24.99999145 0.819843108 0.423936358 0.394982896 0.233758521 159.7291187 55759.31052 0.06163225 0.106750194 6.46E-06 5.189824996 -0.39590675 SPSVPKSPT(ph)PK ddPTM_HeLa_A486_30min_R1 1 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPS(0.001)VPKS(0.4)PT(0.599)PK 69.716 0.016327 207150000 209710 210030 94194 95390 170370 228180 293540 264430 169560 410460 TRUE FALSE FALSE 195010.4119 193386.4579 130668.4394 222072.7407 149000.606 200029.4716 220093.1873 204225.0615 184257.5973 307678.1444 0.633813014 0.62853492 0.424691977 0.721769631 0.484274261 0.650125708 0.715335786 0.663762003 0.598864758 1 18.23106244 -14 0.23007505 3.096547276 0.569596072 0.64440584 0.087158345 98.14844964 0.982618565 95.65997918 0.147868651 1.00E-14 14 -2.526951204 SPT(ph)FSEELPVLGDGQQLR ddPTM_HeLa_A485_30min_R1 1 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 S(0.166)PT(0.811)FS(0.022)EELPVLGDGQQLR 97.235 0.0022187 56251000 13439 20822 17939 14852 20910 18479 20256 20337 18296 23187 TRUE FALSE FALSE 16428.45919 23256.95177 24575.3826 15663.32715 18828.12698 19446.53187 15928.14012 15349.31886 21967.83938 17406.90763 0.943789646 1.336076015 1.411817833 0.899833991 1.08164686 1.117173267 0.915047087 0.881794699 1.262018496 1 14.08737231 -5.269589983 24.98815816 1.019508549 1.241112653 0.271100212 0.155996742 741.9850545 2274780.967 0.043619923 0.065944463 5.38E-06 5.269589983 0.221604105 SPT(ph)FSEELPVLGDGQQLR ddPTM_HeLa_A486_30min_R1 1 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 S(0.163)PT(0.837)FSEELPVLGDGQQLR 215.48 1.47E-33 40293000 18555 21667 17888 5971.6 24526 21356 23801 28344 22643 22117 TRUE FALSE FALSE 17254.39032 19950.02801 24814.71266 13902.18659 21449.72038 18721.31385 17845.73806 21890.68995 24605.71347 16578.75924 1.040752813 1.203348678 1.49677743 0.838554103 1.293807339 1.129234919 1.076421812 1.320405805 1.484170987 1 14.01704842 -7.27999485 24.06165865 1.301716326 1.16147745 0.057909044 0.195829058 1303.432493 1690201.659 0.102763577 0.049532921 5.25E-08 7.27999485 -0.140238876 SPT(ph)GNTPPVIDSVSEK ddPTM_HeLa_A485_30min_R1 1 SPTGNTPPVIDSVSEK 16 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.215)PT(0.785)GNTPPVIDSVSEK 155.63 1.10E-07 185210000 123240 108940 96323 126590 114840 103510 141340 123160 112270 163600 TRUE FALSE FALSE 150654.3128 121679.5853 131956.886 133505.2912 103406.1264 108929.6235 111141.5544 92954.81689 134801.5592 122817.5308 1.226651536 0.990734666 1.074414093 1.087021456 0.841949237 0.886922435 0.90493233 0.756853002 1.097575878 1 16.90615698 -5.750241039 24.92283257 0.900670324 1.085829631 0.42785333 0.10098641 190.5027766 423977.6114 0.028435217 0.036366356 1.78E-06 5.750241039 0.185159307 SPT(ph)GPSNSFLANMGGTVAHK ddPTM_HeLa_A485_30min_R1 1 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 S(0.376)PT(0.624)GPSNSFLANMGGTVAHK 366.43 1.10E-141 22808000000 8008300 8931500 7045200 8322700 8784400 7631000 9876800 8860000 8290600 10138000 TRUE FALSE FALSE 9789718.707 9975961.231 9651512.655 8777348.027 7909794.292 8030547.36 7766540.994 6687071.108 9954447.374 7610783.176 1.286295836 1.310766711 1.268136594 1.153277898 1.039287825 1.055153875 1.020465413 0.878631141 1.307939951 1 22.85961349 -5.43778438 2.004426281 1.041293888 1.299229566 0.529966894 0.100355459 0.246536218 1.957194704 0.030651588 0.051528194 3.65E-06 5.43778438 0.257935678 SPT(ph)GPSNSFLANMGGTVAHK ddPTM_HeLa_A486_30min_R1 2 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 S(0.42)PT(0.58)GPSNSFLANMGGTVAHK;S(0.197)PT(0.803)GPSNSFLANMGGTVAHK ; 349.96 1.50E-127 3323340000 1509670 1656660 988390 314173 1239370 1529250 1506340 1393140 1263040 1683220 TRUE FALSE FALSE 1403849.929 1525380.228 1371121.078 731410.6214 1083916.658 1340586.683 1129437.8 1075952.434 1372521.324 1261730.756 1.112638273 1.208958584 1.086698625 0.579688351 0.859071282 1.062498221 0.895149614 0.85275914 1.087808407 1 20.26697265 -5.017052966 24.95070148 0.897953466 1.157556041 0.386139364 0.135295267 679.9481573 994855.2765 0.037216264 0.066527323 9.61E-06 5.017052966 0.259602574 SPT(ph)PALCDPPACSLPVASQPPQHLSEAGR ddPTM_HeLa_A485_30min_R1 1 SPTPALCDPPACSLPVASQPPQHLSEAGR 29 0 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 S(0.421)PT(0.579)PALCDPPACSLPVASQPPQHLSEAGR 113.5 0.00020342 338400000 39264 79074 106720 18372 119530 61869 51292 51303 73523 44913 TRUE FALSE FALSE 47998.14134 88321.01645 146200.169 19375.61584 107629.1735 65108.36517 40333.04518 38720.85881 88278.39171 33717.01566 1.423558414 2.619479059 4.336094584 0.574653938 3.192132263 1.931023962 1.196222275 1.148407059 2.618214868 1 15.04118923 -6.5183584 21.31272186 1.511726425 2.454557037 0.158113049 1.021083654 54.52452034 257094.1891 0.375218265 0.299853985 3.03E-07 6.5183584 0.942830613 SPT(ph)PPPSSKPSSIPR ddPTM_HeLa_A485_30min_R1 1 SPTPPPSSKPSSIPR 15 1 H7C5F9;B4E2D5;R4GND2;F6S7C4;Q8NEM7-2;Q8NEM7;Q8NEM7-3 H7C5F9 SUPT20H Transcription factor SPT20 homolog 1 0 S(0.035)PT(0.964)PPPSSKPSSIPR 61.648 0.029704 390480000 665600 658270 539620 733810 895180 756080 994730 895460 619320 1018100 TRUE FALSE FALSE 813660.4237 735248.9503 739247.8935 773896.1822 806052.736 795667.1797 782197.8093 675847.031 743611.8433 764306.4067 1.064573601 0.961981927 0.967214048 1.01254703 1.054619887 1.041031676 1.023408678 0.884261894 0.972923734 1 19.5437916 -7.224167911 24.7956455 0.946444571 1.015904823 0.33942369 0.041570346 542.5146748 360920.0873 0.020051265 0.011576246 5.97E-08 7.224167911 0.069460252 SPT(ph)PPPSSKPSSIPR ddPTM_HeLa_A486_30min_R1 2 SPTPPPSSKPSSIPR 15 1 H7C5F9;B4E2D5;R4GND2;F6S7C4;Q8NEM7-2;Q8NEM7;Q8NEM7-3 H7C5F9 SUPT20H Transcription factor SPT20 homolog 1 0 S(0.253)PT(0.738)PPPS(0.002)S(0.002)KPS(0.002)S(0.002)IPR;S(0.493)PT(0.507)PPPSSKPSSIPR ; 68.525 0.012673 917400000 1696650 1657410 980320 548470 1465350 1514170 1742070 1590690 1248950 1834120 TRUE FALSE FALSE 1577723.597 1526070.795 1359926.158 1276865.878 1281552.139 1327367.1 1306185.66 1228524.612 1357209.992 1374844.414 1.147565194 1.109995269 0.989149131 0.928734819 0.932143395 0.965467137 0.95006071 0.893573556 0.987173514 1 20.39083693 -4.778107481 2.642828166 0.946474892 1.143589815 0.85615043 0.028866981 0.086156415 1.191652896 0.007520474 0.02317207 1.67E-05 4.778107481 0.197114922 SPTEYHEPVYANPFYRPT(ph)TPQR ddPTM_HeLa_A485_30min_R1 5 SPTEYHEPVYANPFYRPTTPQR 22 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 S(0.02)PT(0.001)EYHEPVY(0.003)ANPFY(0.003)RPT(0.487)T(0.487)PQR;SPTEYHEPVYANPFYRPT(0.6)T(0.4)PQR;SPTEYHEPVYANPFYRPT(0.645)T(0.355)PQR;SPTEYHEPVYANPFYRPT(0.967)T(0.033)PQR;SPTEYHEPVYANPFYRPT(0.884)T(0.116)PQR ;;;; 172.2 4.48E-14 6842490000 557451 750969 822871 495576 840609 634093 665775 667879 689308 664393 TRUE FALSE FALSE 681454.0518 838788.292 1127285.225 522648.062 756915.0164 667293.129 523526.7324 504080.6281 827645.7929 498772.0523 1.366263504 1.68170668 2.260121072 1.047869582 1.517556994 1.337871931 1.049631249 1.01064329 1.659366817 1 18.9280211 -5.284967337 24.99780889 1.241021786 1.760598178 0.414123462 0.292782375 759.5880325 807039.7674 0.082541979 0.122507974 5.19E-06 5.284967337 0.519576392 SPTEYHEPVYANPFYRPT(ph)TPQR ddPTM_HeLa_A486_30min_R1 3 SPTEYHEPVYANPFYRPTTPQR 22 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 S(0.185)PT(0.03)EY(0.166)HEPVY(0.095)ANPFY(0.109)RPT(0.208)T(0.208)PQR;SPTEYHEPVYANPFYRPT(0.602)T(0.398)PQR;SPTEYHEPVYANPFYRPT(0.858)T(0.142)PQR ;; 162.15 1.17E-13 3804180000 894597 942605 837312 125167 947187 717111 882764 859802 837842 860170 TRUE FALSE FALSE 831890.37 867909.5469 1161541.63 291395.1016 828381.9743 628641.1359 661887.1103 664043.8539 910466.8192 644777.8332 1.290196913 1.34605984 1.80146024 0.451931017 1.284755666 0.974973244 1.026535151 1.029880092 1.412062841 1 19.29844262 -5.238579613 24.99622005 1.035689829 1.465921012 0.378431767 0.265965261 872.6893993 954248.9922 0.069597642 0.120443013 5.77E-06 5.238579613 0.430231182 SPTEYHEPVYANPFYRPTT(ph)PQR ddPTM_HeLa_A486_30min_R1 1 SPTEYHEPVYANPFYRPTTPQR 22 1 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SPTEYHEPVYANPFYRPT(0.251)T(0.749)PQR 165.79 8.57E-14 4012800000 534710 566050 546380 104770 590460 500990 478400 494630 486880 475230 TRUE FALSE FALSE 497229.5902 521194.1365 757952.9686 243909.8548 516399.001 439182.9475 358699.26 382013.5467 529083.1504 356229.3148 1.395813229 1.463086037 2.127710823 0.684698998 1.449625226 1.232865823 1.006933582 1.072380994 1.485231924 1 18.44244672 -5.262981016 24.99999898 1.148208982 1.64229161 0.421626648 0.28330502 138.9143547 2252721.487 0.077099079 0.121483731 5.46E-06 5.262981016 0.494082627 SPTGPSNS(ph)FLANMGGTVAHK ddPTM_HeLa_A485_30min_R1 1 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 S(0.26)PT(0.226)GPS(0.225)NS(0.288)FLANMGGTVAHK 48.771 0.022324 299360000 158700 101510 79173 368280 107200 240380 217820 242600 129100 306430 TRUE FALSE FALSE 194002.2675 113380.7115 108462.3874 388398.2039 96526.7916 252965.9251 171280.9776 183101.9696 155009.1858 230042.6404 0.843331772 0.492868241 0.471488187 1.68837483 0.419603911 1.099647981 0.744561866 0.795947957 0.673828059 1 17.81154178 SPTLSQVHSPLVTS(ph)PSANLK ddPTM_HeLa_A486_30min_R1 2 SPTLSQVHSPLVTSPSANLK 20 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPTLSQVHSPLVT(0.054)S(0.941)PS(0.005)ANLK;SPTLSQVHSPLVT(0.094)S(0.681)PS(0.225)ANLK ; 163.15 1.91E-13 1200430000 516020 522130 339100 71141 566260 555510 590960 587000 459570 459750 TRUE FALSE FALSE 479849.6627 480754.5172 470408.6014 165619.8433 495234.3906 486976.8242 443095.5575 453352.9141 499405.8976 344625.6075 1.392379592 1.395005208 1.364984468 0.480579039 1.437021451 1.413060474 1.285730218 1.315493986 1.449125911 1 18.39467038 SPTPKS(ph)PPSR ddPTM_HeLa_A485_30min_R1 6 SPTPKSPPSR 10 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPT(0.007)PKS(0.993)PPSR;SPT(0.005)PKS(0.995)PPSR;SPT(0.003)PKS(0.997)PPSR;SPT(0.001)PKS(0.999)PPSR;SPT(0.012)PKS(0.988)PPS(0.001)R;SPT(0.008)PKS(0.992)PPSR ;;;;; 106.55 0.00044367 9415890000 757096 1278570 958103 787217 1885280 1657210 2243210 3367120 1217500 1364030 TRUE FALSE FALSE 925509.3932 1428087.639 1312545.17 830220.6714 1697574.904 1743978.953 1763929.858 2541328.541 1461841.082 1024002.424 0.903815627 1.394613534 1.281779358 0.810760455 1.657784067 1.703100415 1.722583674 2.481760278 1.427575803 1 19.9657877 -5.884765722 6.695058019 1.753691675 1.134200152 0.333563987 0.381686716 0.230605925 12.64679313 0.115883109 0.131873284 1.30E-06 5.884765722 -0.619491523 SPTPKS(ph)PPSR ddPTM_HeLa_A486_30min_R1 5 SPTPKSPPSR 10 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPT(0.002)PKS(0.997)PPSR;SPT(0.004)PKS(0.996)PPSR;S(0.001)PT(0.018)PKS(0.98)PPS(0.001)R;S(0.004)PT(0.023)PKS(0.973)PPSR;S(0.007)PT(0.027)PKS(0.965)PPS(0.001)R ;;;; 89.507 0.0016162 6228750000 555467 419450 386904 294404 881208 586332 812495 882218 409770 651425 TRUE FALSE FALSE 516531.6317 386211.2544 536723.5904 685387.3904 770678.6757 513996.3192 609200.1573 681356.2201 445289.1935 488303.9399 1.057807627 0.790923896 1.099158836 1.403608151 1.578276587 1.052615548 1.247583948 1.395352698 0.911909893 1 18.89741989 -4.992272732 7.132156581 1.251988539 0.927576154 0.258956857 0.201151 0.158706574 46.89740856 0.052766989 0.105570924 1.02E-05 4.992272732 -0.324412385 SPTS(ph)PLNMK ddPTM_HeLa_A485_30min_R1 5 SPTSPLNMK 9 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 1 0 SPT(0.119)S(0.881)PLNMK;SPT(0.002)S(0.998)PLNMK;SPT(0.005)S(0.995)PLNMK;SPT(0.003)S(0.997)PLNMK;SPT(0.021)S(0.979)PLNMK ;;;; 173.07 4.14E-06 1941520000 4261840 4610740 3672690 4891480 5440150 5403750 6879650 7417640 4309400 6846020 TRUE FALSE FALSE 5209871.605 5149925.935 5031370.864 5158689.167 4898509.564 5686681.994 5409756.576 5598452.16 5174257.052 5139433.206 1.01370548 1.002041612 0.97897388 1.003746709 0.953122527 1.106480378 1.052597895 1.089313147 1.006775815 1 22.29317783 -6.255121387 24.99988238 1.056713297 0.991085158 0.437317232 0.034126947 442.7417032 1751902.374 0.010874558 0.010610899 5.56E-07 6.255121387 -0.065628139 SPTS(ph)PLNMK ddPTM_HeLa_A486_30min_R1 5 SPTSPLNMK 9 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 1 0 SPT(0.007)S(0.993)PLNMK;S(0.012)PT(0.039)S(0.949)PLNMK;SPT(0.004)S(0.996)PLNMK;S(0.001)PT(0.018)S(0.982)PLNMK;SPT(0.048)S(0.951)PLNMK ;;;; 161.27 1.32E-05 1617640000 6101060 6365940 4076380 2211750 6230050 6302160 7348620 7011430 5289660 7267700 TRUE FALSE FALSE 5673407.2 5861479.73 5654863.505 5149065.776 5448619.036 5524663.575 5509917.55 5415080.447 5748171.988 5447820.615 1.041408593 1.075931119 1.038004719 0.945160669 1.000146558 1.014105266 1.011398491 0.993990227 1.05513239 1 22.37724777 -5.010007333 24.50225753 1.00240795 1.058244387 0.43308466 0.026368181 327.0997251 800889.7014 0.007014577 0.01331256 9.77E-06 5.010007333 0.055836438 SPVDES(ph)GDEVQYGDVPVENGMAPFFEMK ddPTM_HeLa_A485_30min_R1 2 SPVDESGDEVQYGDVPVENGMAPFFEMK 28 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;D6R9F5;F8WA26 Q8WX93-3 PALLD Palladin 1 0 S(0.003)PVDES(0.997)GDEVQYGDVPVENGMAPFFEMK;S(0.139)PVDES(0.857)GDEVQY(0.003)GDVPVENGMAPFFEMK ; 145.34 3.33E-09 55078000 54381.2 57660.9 44526.3 63929 67150.9 65413.6 84351 91934 54694.3 86768 TRUE FALSE FALSE 66478.11033 64403.84067 60998.43126 67421.27939 60465.12061 68838.55495 66328.71977 69387.04235 65670.94432 65138.33445 1.020568163 0.988724093 0.936444442 1.035047641 0.928257087 1.056805574 1.018274728 1.065225922 1.008176597 1 15.99121921 -6.285925529 24.9958913 1.033059319 0.982630015 0.306398115 0.035836855 908.5726711 927483.508 0.011884871 0.010486292 5.18E-07 6.285925529 -0.050429304 SPVDES(ph)GDEVQYGDVPVENGMAPFFEMK ddPTM_HeLa_A486_30min_R1 1 SPVDESGDEVQYGDVPVENGMAPFFEMK 28 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;D6R9F5;F8WA26 Q8WX93-3 PALLD Palladin 1 0 S(0.159)PVDES(0.841)GDEVQYGDVPVENGMAPFFEMK 130.01 3.76E-06 21216000 46000 50645 36290 20819 47930 53700 66789 66855 44932 63601 TRUE FALSE FALSE 42775.63754 46631.70575 50342.45988 48467.68413 41918.17247 47075.03998 50077.68578 51633.57593 48826.74194 47674.89563 0.897236103 0.978118675 1.055953227 1.016629056 0.87925043 0.987417788 1.050399484 1.083034902 1.024160437 1 15.54094216 -6.69510305 5.055571583 1.046368863 0.970527585 0.302878904 0.052226421 0.26618694 12.98854668 0.021867779 0.016479968 2.02E-07 6.69510305 -0.075841278 SPVDIVTGGIS(ph)PVRDLDR ddPTM_HeLa_A485_30min_R1 2 SPVDIVTGGISPVRDLDR 18 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494BZW2;H0Y9N9;H0YAC6 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 SPVDIVTGGIS(1)PVRDLDR;SPVDIVT(0.001)GGIS(0.999)PVRDLDR ; 188.51 2.60E-18 97167000 69650 124999 125295 79146 148597 127501 136314 164613 109483 125831 TRUE FALSE FALSE 85143.40221 139616.5457 171646.8345 83469.54557 133802.1609 134176.7552 107189.4003 124241.4036 131455.2339 94463.64745 0.901335112 1.477992323 1.817067614 0.883615526 1.416440764 1.42040625 1.134715874 1.315229795 1.391595999 1 16.52747162 -10.76412441 2.522713934 0.919861863 1.31590194 0.107432128 0.263773611 24175989.46 17479034.19 12028467.56 0.066107095 1.72E-11 10.76412441 0.396040077 SPVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_A485_30min_R1 3 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.127)PVGKS(0.857)PPS(0.011)T(0.004)GS(0.001)TYGSSQK;S(0.061)PVGKS(0.923)PPS(0.014)T(0.001)GS(0.001)TYGSSQK;S(0.084)PVGKS(0.869)PPS(0.035)T(0.011)GS(0.001)TYGSSQK ;; 76.471 0.0017677 930390000 474460 409347 247231 562730 399194 425570 584000 520770 339137 769710 TRUE FALSE FALSE 580001.9901 457216.5708 338692.035 593470.515 359448.8437 447852.1871 459223.6292 393050.341 407198.6852 577835.4625 1.003749385 0.791257374 0.586139233 1.027057966 0.622060893 0.775051405 0.794730782 0.680211525 0.704696599 1 19.14029922 -4.277185584 4.877574956 0.762316021 1.013955872 0.19529437 0.13739981 0.233028885 16.02540651 0.031974286 0.191856646 5.28E-05 4.277185584 0.251639852 SPVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_A486_30min_R1 2 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 SPVGKS(0.999)PPS(0.001)TGSTYGSSQK;SPVGKS(0.996)PPS(0.003)TGSTYGSSQK ; 160.88 1.31E-12 1640520000 688910 633830 300110 251850 544050 703320 807480 790020 465180 924580 TRUE FALSE FALSE 640620.9665 583603.0024 416320.6292 586319.5278 475810.1759 616551.5292 605439.9633 610149.692 505502.1769 693059.15 0.924338084 0.842068101 0.600699997 0.845987717 0.686536172 0.889608815 0.873576178 0.880371743 0.729378116 1 19.40261896 -6.295834389 24.91121979 0.867047041 0.777091409 0.17061262 0.103596756 1184.655143 858004.5611 0.03626165 0.031981392 5.06E-07 6.295834389 -0.089955632 SPVGKS(ph)PPSTGSTYGSSQKEESAASGGAAYTKR ddPTM_HeLa_A485_30min_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTKR 33 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.023)PVGKS(0.721)PPS(0.073)T(0.073)GS(0.073)T(0.025)YGS(0.008)S(0.002)QKEESAASGGAAYTKR 70.935 0.0012209 661210000 101880 130650 66186 130720 215380 228760 316090 456150 130860 222000 TRUE FALSE FALSE 124542.8545 145928.381 90670.95563 137860.9026 193936.011 240737.5199 248554.7893 344278.4973 157122.4017 166659.4856 0.747289325 0.875608013 0.544049175 0.827201057 1.163666204 1.444487357 1.491392994 2.06575999 0.942775031 1 17.34654391 -5.920899292 2.224032978 1.463014088 0.729381199 0.495556218 0.301375176 0.230829849 2.32231214 0.102605081 0.118227589 1.20E-06 5.920899292 -0.733632889 SPVGS(ph)GAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKK ddPTM_HeLa_A486_30min_R1 1 SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKK 52 1 P16989-2;P16989;P16989-3 P16989-2 YBX3 Y-box-binding protein 3 1 0 S(0.466)PVGS(0.534)GAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKK 167.34 3.46E-19 117400000 57060 50619 21924 31689 46403 60171 81732 75184 36851 87713 TRUE FALSE FALSE 53060.38866 46607.76609 30413.55995 73773.59347 40582.70305 52747.71379 61281.78913 58066.24446 40045.27435 65749.09388 0.807013231 0.708873132 0.462570024 1.122047303 0.617235929 0.802257654 0.932055265 0.883148969 0.609061996 1 16.00468339 -5.243875895 24.9995386 0.838838325 0.664424276 0.213167641 0.168264282 1420.483634 2021887.539 0.044347612 0.07659047 5.70E-06 5.243875895 -0.174414049 SPVKEEAKS(ph)PEK ddPTM_HeLa_A485_30min_R1 1 SPVKEEAKSPEK 12 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 SPVKEEAKS(1)PEK 83.54 0.0018164 894440000 547220 304600 168430 1397700 490490 468560 1051500 718690 330930 1951900 TRUE FALSE FALSE 668947.2011 340220.3203 230739.266 1474052.812 441655.0934 493093.0771 826838.435 542430.1506 397344.6155 1465327.252 0.456517273 0.232180436 0.157466031 1.005954683 0.301403726 0.336507136 0.56426879 0.370176798 0.271164421 1 20.48279147 -10.63608609 2.87279979 1.052806988 0.41337869 0.377851418 0.226856364 90599412.3 88483197.83 35577820.72 0.057410453 2.31E-11 10.63608609 -0.639428298 SPVKEEAKS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 SPVKEEAKSPEK 12 2 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 SPVKEEAKS(1)PEK 75.018 0.0041262 1298600000 1116200 886280 221140 1347600 631330 1466100 2342800 1820600 611270 3238300 TRUE FALSE FALSE 1037960.144 816047.945 306771.3303 3137280.904 552142.7045 1285227.488 1756606.66 1406089.123 664255.3758 2427408.602 0.427600093 0.336180709 0.126378118 1.292440383 0.227461789 0.529464832 0.723655119 0.579255228 0.273647945 1 21.21098555 -11.33572516 2.254966427 3.79715053 0.510679085 0.184694351 0.313528307 13207074.99 1588990.299 188503436.4 0.076582748 4.62E-12 11.33572516 -3.286471445 SPVPSPGSS(ph)SPQLQVK ddPTM_HeLa_A485_30min_R1 2 SPVPSPGSSSPQLQVK 16 0 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SPVPSPGS(0.025)S(0.764)S(0.211)PQLQVK;SPVPSPGS(0.024)S(0.759)S(0.217)PQLQVK ; 294.94 1.70E-67 888690000 682180 562300 514050 803730 764030 561260 738780 595570 643650 986670 TRUE FALSE FALSE 833928.5875 628056.0936 704218.4864 847635.7347 687960.4905 590646.7057 580933.6177 449505.5237 772824.6511 740711.3273 1.125848298 0.847909395 0.950732708 1.144353682 0.928783542 0.797404716 0.784291527 0.606856554 1.043354709 1 19.49855187 -6.070893744 4.700581381 0.819794664 1.004367458 0.23893392 0.138477109 0.291810256 12.21956341 0.045330124 0.046228934 8.49E-07 6.070893744 0.184572794 SPVPSPGSS(ph)SPQLQVK ddPTM_HeLa_A486_30min_R1 1 SPVPSPGSSSPQLQVK 16 0 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SPVPSPGS(0.011)S(0.627)S(0.362)PQLQVK 231.41 1.73E-34 414120000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SPVPSPGSSS(ph)PQLQVK ddPTM_HeLa_A486_30min_R1 1 SPVPSPGSSSPQLQVK 16 0 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SPVPSPGS(0.213)S(0.337)S(0.45)PQLQVK 309.15 4.32E-78 497470000 259690 258480 163840 93422 240200 260500 276740 283990 206560 279240 TRUE FALSE FALSE 241487.072 237997.1034 227283.2358 217491.1373 210071.8762 228362.1586 207496.7249 219331.6765 224464.7871 209316.4865 1.15369351 1.137020344 1.085835328 1.039054023 1.00360884 1.090989833 0.991306172 1.047847115 1.072370318 1 17.67532642 -4.923280739 2.0506599 1.035952938 1.152168069 0.688232305 0.029823775 0.184606244 1.518872642 0.008325611 0.024357102 1.19E-05 4.923280739 0.116215132 SPVS(ph)PLAAQGIPLPAQLTK ddPTM_HeLa_A486_30min_R1 1 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 1 0 S(0.469)PVS(0.531)PLAAQGIPLPAQLTK 223.65 8.46E-35 185750000 260830 292820 176770 97734 270200 287030 318200 301450 270460 358790 TRUE FALSE FALSE 242547.1639 269615.8768 245220.0781 227529.6912 236308.9965 251619.1569 238582.9944 232816.4156 293903.6906 268946.6487 0.901841183 1.00248833 0.911779638 0.846003073 0.87864637 0.935572754 0.887101571 0.865660222 1.092795512 1 18.03696049 -7.759694882 24.99997598 1.04639778 0.904962367 0.609966107 0.045653535 30.2883136 434107.9383 0.036271988 0.012088072 1.74E-08 7.759694882 -0.141435413 SPVSFSPTDHSLSTS(ph)SGSSIFTPEYDDSR ddPTM_HeLa_A485_30min_R1 1 SPVSFSPTDHSLSTSSGSSIFTPEYDDSR 29 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 SPVSFSPTDHSLS(0.001)T(0.05)S(0.797)S(0.139)GS(0.012)SIFTPEYDDSR 103.75 0.00027118 166600000 10403 16612 15388 10253 21269 17128 22147 23733 13364 18865 TRUE FALSE FALSE 12717.11146 18554.62889 21080.66155 10813.09543 19151.38368 18024.7956 17415.11253 17912.44454 16046.03222 14162.30268 0.897955067 1.310142094 1.488505225 0.763512521 1.352278941 1.272730572 1.229680859 1.264797465 1.133010117 1 13.78976824 -8.039959737 6.650959998 1.000011426 1.204983387 0.080145762 0.202753098 0.820308592 127.278267 0.189437025 0.049087226 9.12E-09 8.039959737 0.204971961 SPWASDFKDFQES(ph)SPQKGLEVER ddPTM_HeLa_A485_30min_R1 1 SPWASDFKDFQESSPQKGLEVER 23 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SPWASDFKDFQES(0.5)S(0.5)PQKGLEVER 77.984 0.0023974 122880000 90901 105680 54743 111340 114310 132870 209720 268150 77548 149740 TRUE FALSE FALSE 111121.6138 118038.3567 74994.71375 117422.2223 102928.895 139826.8677 164911.6087 202385.7921 93111.17229 112412.5738 0.988515876 1.050045851 0.667138126 1.044564841 0.915635072 1.243872132 1.467021021 1.800383936 0.828298554 1 16.77844389 -6.346062584 3.762309636 1.342031022 0.929577638 0.268674725 0.266221662 0.275175504 7.358855639 0.0955671 0.08417974 4.51E-07 6.346062584 -0.412453384 SPWASDFKDFQESS(ph)PQKGLEVER ddPTM_HeLa_A485_30min_R1 1 SPWASDFKDFQESSPQKGLEVER 23 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SPWASDFKDFQES(0.15)S(0.85)PQKGLEVER 170.44 6.93E-15 121200000 81317 78332 45862 115830 105840 134410 204110 261070 81348 159320 TRUE FALSE FALSE 99405.68611 87492.246 62828.26228 122157.4996 95302.19797 141447.4998 160500.2311 197042.1732 97673.79743 119604.4561 0.831120256 0.731513264 0.525300347 1.021345723 0.796811433 1.18262734 1.341925179 1.647448428 0.816640121 1 16.86791162 -6.249788836 2.367434476 1.260769101 0.760636613 0.43043082 0.235007483 0.262664324 2.899289242 0.088870024 0.082721255 5.63E-07 6.249788836 -0.500132488 SPWASDFKDFQESS(ph)PQKGLEVER ddPTM_HeLa_A486_30min_R1 1 SPWASDFKDFQESSPQKGLEVER 23 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SPWASDFKDFQES(0.214)S(0.786)PQKGLEVER 120.57 1.78E-05 63870000 72213 59556 28875 39557 74641 69139 108530 107080 42310 129650 TRUE FALSE FALSE 67151.24161 54836.56566 40056.1733 92090.6951 65278.82978 60609.33313 81374.64609 82700.22154 45977.46487 97184.79612 0.690964475 0.564250457 0.412165019 0.947583354 0.671697965 0.62365036 0.837318689 0.85095843 0.473093186 1 16.56844301 -14 0.124107682 1.972416976 0.543692356 0.250367438 0.16241883 215.4307474 1.711879259 53.30578251 1.42987372 1.00E-14 14 -1.42872462 SPYGGGRPGR ddPTM_HeLa_A485_30min_R1 1 SPYGGGRPGR 10 1 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 87.298 0.017893 27810000 12980 21392 18811 13860 20705 17555 20608 24601 17626 18464 FALSE FALSE TRUE 15867.35622 23893.60831 25769.97169 14617.1367 18643.5375 18474.15265 16204.93245 18567.56618 21163.37652 13861.2646 1.14472645 1.723768285 1.859135687 1.054531251 1.345009855 1.332789841 1.169080377 1.339529019 1.526799836 1 13.75877126 -5.267198085 24.99838138 1.270401241 1.590665954 0.302909444 0.223296806 575.2269593 2497045.859 0.061937494 0.094753785 5.41E-06 5.267198085 0.320264714 SPYGSRS(ph)PFEHSVEHK ddPTM_HeLa_A485_30min_R1 4 SPYGSRSPFEHSVEHK 16 1 O14646 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.011)PYGS(0.041)RS(0.949)PFEHSVEHK;S(0.041)PYGS(0.161)RS(0.798)PFEHSVEHK;SPYGS(0.113)RS(0.887)PFEHSVEHK;S(0.054)PYGS(0.293)RS(0.653)PFEHSVEHK ;;; 223.51 4.23E-34 3483740000 1342530 1899860 1529050 1111080 2671870 2014320 2906280 3614710 1760950 2076610 TRUE FALSE FALSE 1641171.167 2122032.1 2094709.224 1171775.487 2405849.241 2119786.68 2285329.536 2728196.705 2114356.513 1558949.344 1.052741818 1.361193748 1.343667279 0.751644363 1.543250427 1.359753406 1.465942139 1.750022677 1.356270183 1 20.57214262 SPYGSRS(ph)PFEHSVEHK ddPTM_HeLa_A486_30min_R1 3 SPYGSRSPFEHSVEHK 16 1 O14646 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.047)PYGS(0.236)RS(0.717)PFEHS(0.001)VEHK;S(0.145)PYGS(0.145)RS(0.709)PFEHS(0.001)VEHK;S(0.002)PYGS(0.058)RS(0.94)PFEHSVEHK ;; 210.61 7.48E-26 1873420000 1216120 1054590 878290 157745 1568800 1083910 1485880 1502520 946730 1050070 TRUE FALSE FALSE 1130876.268 971020.4476 1218387.409 367238.332 1372026.476 950188.2046 1114097.108 1160428.996 1028793.319 787125.6372 1.436716344 1.233628282 1.547894455 0.466556182 1.743084472 1.207162059 1.415399341 1.474261466 1.30702555 1 19.5862344 SPYLYPLYGLGELPQGFAR ddPTM_HeLa_A486_30min_R1 1 SPYLYPLYGLGELPQGFAR 19 0 P50395-2;P50395;Q5SX91;Q5SX87;P31150 P50395-2 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 0 91.858 0.002521 6388600 3371.1 3101.3 2494.7 700.87 3314 3305.8 3543.2 3533.4 2808.4 2990.8 FALSE FALSE TRUE 3134.803298 2855.541693 3460.71465 1631.66078 2898.327218 2897.964007 2656.653884 2728.921954 3051.834373 2241.884213 1.398289564 1.273723985 1.543663419 0.727807783 1.292808612 1.292646601 1.185009408 1.217244824 1.361280995 1 11.13049605 SQAAPGS(ph)SPCR ddPTM_HeLa_A485_30min_R1 1 SQAAPGSSPCR 11 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SQAAPGS(0.5)S(0.5)PCR 135.04 2.52E-05 2707000000 778030 948810 857150 716810 1298100 790400 955980 1049500 891970 971030 TRUE FALSE FALSE 951100.0893 1059765.076 1174245.454 755967.5152 1168856.606 831784.1218 751727.0634 792108.4794 1070980.197 728970.0915 1.304717574 1.453784028 1.610828027 1.037035023 1.603435614 1.141040122 1.031217977 1.086613139 1.469168914 1 19.4755001 -6.303736839 23.15886939 1.143871718 1.396169329 0.306000108 0.192922985 267.8916977 146675.821 0.066278899 0.058453346 4.97E-07 6.303736839 0.252297611 SQAAPGS(ph)SPCR ddPTM_HeLa_A486_30min_R1 2 SQAAPGSSPCR 11 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SQAAPGS(0.5)S(0.5)PCR;SQAAPGS(0.557)S(0.443)PCR ; 136.21 2.08E-05 2870569000 950440 1073320 926380 346027 1222900 1000070 1096880 1109310 846460 890400 TRUE FALSE FALSE 883819.0641 988266.2142 1285099.145 805568.3432 1069512.479 876691.5314 822429.0224 856744.3291 919831.8343 667438.0445 1.324196413 1.480686069 1.925420878 1.206955986 1.602414618 1.31351747 1.232217775 1.283631247 1.378153136 1 19.3482744 -6.414155917 4.62505497 1.249767175 1.512199912 0.31678463 0.197309201 0.306163873 10.47135648 0.070789833 0.061455001 3.85E-07 6.414155917 0.262432737 SQAAPGSS(ph)PCR ddPTM_HeLa_A485_30min_R1 7 SQAAPGSSPCR 11 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SQAAPGS(0.052)S(0.948)PCR;SQAAPGS(0.004)S(0.996)PCR;SQAAPGS(0.009)S(0.991)PCR;SQAAPGS(0.049)S(0.951)PCR;SQAAPGS(0.071)S(0.929)PCR;SQAAPGS(0.385)S(0.614)PCR;SQAAPGS(0.334)S(0.666)PCR ;;;;;; 200.82 1.16E-14 3997319000 3756436 4786766 3958514 3862562 6214070 3947321 4828120 5208195 4500278 5217199 TRUE FALSE FALSE 4592042.229 5346536.644 5422933.056 4073563.982 5595375.372 4153996.624 3796552.72 3930877.01 5403442.516 3916647.305 1.17244211 1.365079934 1.384585497 1.04006403 1.42861354 1.060600126 0.969337401 1.003633134 1.379609164 1 21.90118779 -6.291477285 24.4741899 1.075781831 1.275671391 0.298257877 0.14974474 691.7049684 563582.5831 0.05198946 0.045857848 5.11E-07 6.291477285 0.199889559 SQAAPGSS(ph)PCR ddPTM_HeLa_A486_30min_R1 3 SQAAPGSSPCR 11 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SQAAPGS(0.045)S(0.955)PCR;SQAAPGS(0.008)S(0.992)PCR;SQAAPGS(0.018)S(0.982)PCR ;; 161.23 7.34E-08 3619710000 2651150 3111750 2577960 1021260 3327000 2746130 3196500 3261030 2412940 2524190 TRUE FALSE FALSE 2465318.076 2865163.597 3576215.152 2377544.892 2909696.637 2407340.401 2396701.891 2518564.657 2622095.582 1892116.394 1.302942083 1.514263925 1.890060867 1.25655319 1.537800024 1.272300377 1.266677831 1.331083365 1.385800361 1 20.85156941 -6.118256091 1.314763884 1.262593279 1.536371354 0.296764343 0.186641452 0.590844918 2.09249227 0.084025478 0.085661221 7.62E-07 6.118256091 0.273778074 SQAAPGSS(ph)PCRGHVLR ddPTM_HeLa_A485_30min_R1 1 SQAAPGSSPCRGHVLR 16 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 S(0.01)QAAPGS(0.237)S(0.753)PCRGHVLR 50.87 0.0087771 0 21671 48747 37142 19613 63205 54797 65285 137420 38266 33608 TRUE FALSE FALSE 26491.63919 54447.53761 50882.37141 20684.40853 56912.08827 57666.08619 51336.32642 103717.5295 45945.6352 25230.14411 1.049999519 2.158035141 2.016729321 0.819829187 2.255717923 2.285602727 2.034721887 4.110857595 1.821061148 1 14.62286083 -5.974321695 24.43307428 2.413535179 1.586505131 0.146059998 0.823240333 295.0133044 280705.0924 0.250139443 0.283621391 1.06E-06 5.974321695 -0.827030047 SQALGQS(ph)APSLTASLK ddPTM_HeLa_A485_30min_R1 1 SQALGQSAPSLTASLK 16 0 O15021;H7C0U3;H7C2V7;H7C3S4;E7EX28;O15021-4 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 1 0 SQALGQS(0.992)APS(0.001)LT(0.007)ASLK 115.76 0.00012228 24754000 41295 45232 31946 47519 66511 64693 60244 65068 37812 62565 TRUE FALSE FALSE 50480.93028 50521.48893 43764.15478 50114.84265 59888.93131 68080.22545 47372.37725 49109.97098 45400.52157 46968.69692 1.074778173 1.075641698 0.931772811 1.066983883 1.275081815 1.449480822 1.008594667 1.045589386 0.96661233 1 15.51941195 -6.917051419 24.94331306 1.00881302 1.142865125 0.213299537 0.131977303 50.39668983 15149.13421 0.062725914 0.042289804 1.21E-07 6.917051419 0.134052105 SQANGAGALSYVS(ph)PNTSK ddPTM_HeLa_A485_30min_R1 2 SQANGAGALSYVSPNTSK 18 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;A0A494C002;A0A494C156;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C1N1;F5H1Z4;A0A494C1G3;A0A494C0Q2 A0A494C0Q6;A0A494C0Q2 PARN Poly(A)-specific ribonuclease PARN 1 0 SQANGAGALSYVS(1)PNTSK;SQANGAGALSYVS(0.994)PNT(0.006)SK ; 362.9 1.32E-116 681900000 423820 355990 287130 525240 540090 403470 611450 511880 376770 659580 TRUE FALSE FALSE 518097.2968 397619.9338 393351.3355 553932.5312 486316.7432 424595.0653 480808.7124 386340.6274 452384.2831 495158.8447 1.046325442 0.803014907 0.794394243 1.118696631 0.982142899 0.857492641 0.971019134 0.78023574 0.913614465 1 18.91753188 -9.37821211 12.23286261 0.999999989 0.914935426 0.048455799 0.10721287 0 0 0.105164019 0.025506021 4.19E-10 9.37821211 -0.085064562 SQANGAGALSYVS(ph)PNTSK ddPTM_HeLa_A486_30min_R1 2 SQANGAGALSYVSPNTSK 18 0 A0A494C0Q6;A0A494C0W0;O95453-2;O95453;A0A494C0K5;O95453-3;A0A494C002;A0A494C156;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C1N1;F5H1Z4;A0A494C1G3;A0A494C0Q2 A0A494C0Q6;A0A494C0Q2 PARN Poly(A)-specific ribonuclease PARN 1 0 SQANGAGALSYVS(0.999)PNT(0.001)SK;SQANGAGALSYVS(1)PNTSK ; 264.64 4.54E-58 1037410000 548230 549820 295191 231370 525180 570620 683480 662780 445310 703070 TRUE FALSE FALSE 509801.9081 506250.2608 409496.8607 538641.0528 459307.0273 500222.706 512466.0749 511879.4624 483909.8293 527016.6958 0.967335403 0.960596248 0.777009275 1.022056905 0.871522726 0.949159125 0.972390588 0.971277507 0.918205881 1 19.00748914 -6.507962147 23.41078476 0.962746382 0.918795294 0.103561754 0.063750978 737.9962116 1158250.685 0.02234835 0.019011655 3.10E-07 6.507962147 -0.043951087 SQAPLESSLDSLGDVFLDS(ph)GRK ddPTM_HeLa_A485_30min_R1 4 SQAPLESSLDSLGDVFLDSGRK 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 SQAPLESSLDSLGDVFLDS(1)GRK;SQAPLESSLDSLGDVFLDS(1)GRK;SQAPLESSLDSLGDVFLDS(1)GRK;SQAPLESSLDSLGDVFLDS(1)GRK ;;; 284.34 1.37E-73 614124000 303033.8 277819.8 218399.1 431204 371634.2 321120.4 492004.1 485487.6 259068.4 524103.9 TRUE FALSE FALSE 370442.6234 310308.4089 299194.0154 454759.5827 334632.9942 337933.7676 386883.4047 366421.0049 311061.0516 393454.4431 0.941513382 0.788676845 0.76042861 1.155812549 0.850499975 0.858889189 0.983299112 0.931292075 0.790589754 1 18.58583707 SQAPLESSLDSLGDVFLDS(ph)GRK ddPTM_HeLa_A486_30min_R1 4 SQAPLESSLDSLGDVFLDSGRK 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 SQAPLESSLDSLGDVFLDS(1)GRK;SQAPLESSLDSLGDVFLDS(1)GRK;SQAPLESSLDSLGDVFLDS(1)GRK;SQAPLESSLDSLGDVFLDS(1)GRK ;;; 184.19 9.40E-20 611540000 214954 206296 102391 113011 186137 240053 286462 275702 154290 303004 TRUE FALSE FALSE 199886.8346 189948.3536 142039.5373 263095.3193 162789.9618 210437.7015 214786.1777 212930.6731 167663.9814 227129.8262 0.88005542 0.836298591 0.625367173 1.158347733 0.716726484 0.926508443 0.945653776 0.937484419 0.738185663 1 17.79315764 -5.228930914 24.99687466 0.908129022 0.786146302 0.179915171 0.132799543 1247.432056 959191.8335 0.034486527 0.059727268 5.90E-06 5.228930914 -0.121982721 SQASMVINS(ph)DTDDEEEVSAALTLAHLK ddPTM_HeLa_A486_30min_R1 1 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.014)QAS(0.014)MVINS(0.484)DT(0.484)DDEEEVS(0.003)AALT(0.001)LAHLK 49.944 0.028995 11729000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SQASMVINSDT(ph)DDEEEVSAALTLAHLK ddPTM_HeLa_A485_30min_R1 1 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SQASMVINS(0.031)DT(0.968)DDEEEVS(0.001)AALTLAHLK 100.36 0.0017879 28834000 12409 18378 14946 15792 19877 18738 22222 23122 16670 18878 TRUE FALSE FALSE 15169.33924 20527.14723 20475.14735 16654.67697 17897.97609 19719.09271 17474.08816 17451.29325 20015.51609 14172.06202 1.070369239 1.448423469 1.444754286 1.175176692 1.262905571 1.39140604 1.232995462 1.231387022 1.412322078 1 13.79076206 -10.27423863 3.463185043 0.999082185 1.299890239 0.356412652 0.119512593 58703744.86 86104090.75 562498.5606 0.029162236 5.32E-11 10.27423863 0.300808054 SQASMVINSDT(ph)DDEEEVSAALTLAHLK ddPTM_HeLa_A486_30min_R1 1 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.001)QAS(0.001)MVINS(0.161)DT(0.685)DDEEEVS(0.128)AALT(0.025)LAHLK 63.573 0.00076448 0 10629 11871 8866.4 5142.7 13199 10283 12738 11793 10527 12406 TRUE FALSE FALSE 9883.961988 10930.29873 12299.70753 11972.4655 11543.45834 9014.38801 9550.817671 9107.991339 11439.48884 9299.45685 1.062853686 1.175369584 1.322626442 1.287437072 1.241304576 0.969345646 1.027029624 0.979411108 1.230124406 1 13.18293074 -6.251037941 24.73066326 1.039010818 1.225233743 0.466247772 0.094372532 562.2174085 1336739.037 0.032389634 0.032035192 5.61E-07 6.251037941 0.186222925 SQCRNS(ph)PSNLSSSSDTGSVGGTYR ddPTM_HeLa_A485_30min_R1 1 SQCRNSPSNLSSSSDTGSVGGTYR 24 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.082)QCRNS(0.837)PS(0.082)NLSSSSDTGSVGGTYR 205.45 5.54E-29 782470000 103410 148840 147460 90444 168510 149750 181690 204050 129990 150260 TRUE FALSE FALSE 126413.1977 166245.5433 202011.5903 95384.7267 151732.5527 157590.6784 142870.4472 154006.4176 156077.8007 112802.9473 1.120655096 1.4737695 1.790836101 0.845587185 1.345111598 1.39704398 1.266548886 1.365269447 1.383632293 1 16.78344524 -10.43162976 4.053658185 0.998327645 1.336750851 0.158812406 0.229030851 0.00344406 0.000482898 0.220636604 0.05326099 3.70E-11 10.43162976 0.338423207 SQCRNS(ph)PSNLSSSSDTGSVGGTYR ddPTM_HeLa_A486_30min_R1 1 SQCRNSPSNLSSSSDTGSVGGTYR 24 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.065)QCRNS(0.934)PS(0.001)NLSSSSDTGSVGGTYR 196.01 6.16E-22 540170000 155020 161120 144720 44520 209760 162210 164930 183910 148130 151050 TRUE FALSE FALSE 144153.8985 148352.2644 200759.4597 103644.8099 183449.9449 142198.1794 123662.7695 142037.7077 160970.0277 113226.0968 1.273150824 1.310230314 1.773084698 0.915379165 1.620209033 1.255878136 1.092175506 1.254460868 1.421668963 1 16.78884699 -6.506597708 24.69359846 1.207673587 1.377547173 0.123878968 0.23426808 1442.775956 2188277.969 0.080863215 0.069368654 3.11E-07 6.506597708 0.169873586 SQDATFS(ph)PGSEQAEK ddPTM_HeLa_A485_30min_R1 2 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDATFS(1)PGSEQAEK;SQDATFS(0.999)PGSEQAEK ; 317.83 4.15E-78 646160000 824870 649810 551360 1030410 930260 734180 1087320 938670 679400 1300850 TRUE FALSE FALSE 1008359.486 725799.6269 755331.008 1086698.689 837640.0481 772620.5295 855005.1994 708459.7107 815749.3482 976572.0354 1.032550031 0.743211561 0.7734514 1.112768592 0.857735034 0.791155697 0.875516775 0.72545566 0.835319176 1 19.89736694 -5.991167446 24.99738904 0.829566921 0.904569427 0.060707999 0.121020954 570.1637719 1613632.039 0.037761758 0.042759341 1.02E-06 5.991167446 0.075002506 SQDATFS(ph)PGSEQAEK ddPTM_HeLa_A486_30min_R1 2 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDATFS(1)PGSEQAEK;SQDATFS(1)PGSEQAEK ; 349.02 4.95E-104 601570000 723180 742300 416720 302860 648540 803740 965360 881830 575750 974090 TRUE FALSE FALSE 672488.8165 683477.4446 578085.1441 705073.3857 567194.0658 704582.7306 723816.7175 681056.5592 625656.4736 730171.5237 0.921001155 0.936050534 0.791711434 0.965627065 0.776795653 0.964955093 0.991296831 0.932735032 0.856862331 1 19.47787588 SQDATFS(ph)PGSEQAEKS(ph)PGPIVSR ddPTM_HeLa_A485_30min_R1 3 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 SQDAT(0.012)FS(0.987)PGS(0.001)EQAEKS(0.998)PGPIVS(0.001)R;SQDAT(0.005)FS(0.98)PGS(0.015)EQAEKS(1)PGPIVSR;SQDAT(0.007)FS(0.992)PGS(0.001)EQAEKS(0.998)PGPIVS(0.002)R ;; 137.71 9.47E-07 1639290000 1568800 1480510 1155120 2187030 2252220 1785410 2713020 2765050 1386270 2914490 TRUE FALSE FALSE 1917774.148 1653642.766 1582446.957 2306501.911 2027981.069 1878891.307 2133361.114 2086917.152 1664481.673 2187961.28 0.876511922 0.755791604 0.72325181 1.054178578 0.926881608 0.858740657 0.975045186 0.953818137 0.760745489 1 21.06115578 -5.244674836 24.99774201 0.929279779 0.782245759 0.395484361 0.083516001 848.1267171 1264646.52 0.022434799 0.038726196 5.69E-06 5.244674836 -0.147034019 SQDATFS(ph)PGSEQAEKS(ph)PGPIVSR ddPTM_HeLa_A486_30min_R1 3 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 SQDAT(0.034)FS(0.948)PGS(0.02)EQAEKS(0.998)PGPIVSR;SQDAT(0.172)FS(0.735)PGS(0.096)EQAEKS(0.992)PGPIVS(0.004)R;S(0.008)QDAT(0.243)FS(0.738)PGS(0.045)EQAEKS(0.967)PGPIVSR ;; 88.293 0.00046796 999480000 945360 965330 604410 662390 989390 1148160 1548550 1417520 807230 1519690 TRUE FALSE FALSE 879095.1458 888833.7351 838453.7387 1542077.395 865291.4805 1006511.693 1161086.411 1094781.64 877201.3464 1139149.732 0.771711673 0.780260671 0.736034706 1.353709132 0.759594157 0.883563999 1.019257063 0.961051571 0.770049205 1 20.11952596 SQDATFSPGSEQAEKS(ph)PGPIVSR ddPTM_HeLa_A485_30min_R1 3 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR ;; 267.24 5.72E-62 5113410000 1060630 1075930 850280 1471570 1461490 1182350 1861860 1905130 943210 1812390 TRUE FALSE FALSE 1296563.484 1201750.654 1164833.955 1551958.143 1315978.924 1244256.018 1464058.401 1437893.88 1132503.595 1360594.528 0.952938923 0.88325407 0.8561213 1.140647056 0.967208744 0.914494357 1.076043135 1.056812923 0.832359364 1 20.37580576 SQDATFSPGSEQAEKS(ph)PGPIVSR ddPTM_HeLa_A486_30min_R1 4 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDATFSPGSEQAEKS(0.999)PGPIVSR;SQDATFSPGSEQAEKS(1)PGPIVSR;SQDATFSPGSEQAEKS(0.997)PGPIVS(0.003)R;SQDATFSPGSEQAEKS(1)PGPIVSR ;;; 180.35 5.12E-21 4321010000 1269560 1150520 665452 650815 1245130 1327820 1674850 1628700 872936 1783220 TRUE FALSE FALSE 1180570.4 1059348.605 923132.8358 1515130.21 1088954.185 1164007.069 1255784.815 1257880.564 948602.7953 1336690.105 0.883204264 0.792516232 0.690610959 1.133493997 0.814664656 0.870812961 0.939473413 0.941041278 0.709665458 1 20.3502336 SQDQDS(ph)EVNELSR ddPTM_HeLa_A485_30min_R1 2 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 SQDQDS(1)EVNELSR;SQDQDS(1)EVNELSR ; 260.24 1.34E-53 0 324450 413950 434550 356370 517630 364060 392440 347380 381680 515670 TRUE FALSE FALSE 396622.7832 462357.8516 595308.1281 375837.5907 466092.9397 383121.6187 308591.9881 262184.5103 458279.675 387122.9592 1.024539552 1.194343659 1.537775309 0.970848103 1.203991984 0.989663903 0.797142047 0.677264172 1.183809082 1 18.56243235 -6.380755843 3.090902809 0.88718395 1.196740808 0.318550088 0.187457718 0.294912895 5.366740724 0.071755787 0.061988447 4.16E-07 6.380755843 0.309556858 SQDQDS(ph)EVNELSR ddPTM_HeLa_A486_30min_R1 2 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 SQDQDS(1)EVNELSR;SQDQDS(1)EVNELSR ; 228.42 9.77E-28 1296230000 464480 584250 467940 190400 577020 518540 546630 562300 431290 557190 TRUE FALSE FALSE 431922.3506 537951.9022 649138.8999 443260.8223 504644.7711 454567.8069 409857.3923 434276.5649 468674.5645 417665.9973 1.034133383 1.287995445 1.554205763 1.061280605 1.208249593 1.088352439 0.981304188 1.039769978 1.122127651 1 18.67199017 -5.946818249 1.473267523 1.04227512 1.274675051 0.318386089 0.136485763 0.474370606 2.123221921 0.056027945 0.065499594 1.13E-06 5.946818249 0.232399931 SQDSYPGS(ph)PSLSPR ddPTM_HeLa_A485_30min_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;R4GMX8;Q6VN20-2;Q6VN20-3;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 0 SQDSYPGS(0.997)PS(0.003)LSPR 223.76 8.02E-28 373790000 133120 183000 179900 149630 216400 180390 201300 235760 169870 200440 TRUE FALSE FALSE 162732.0847 204400.2581 246452.4963 157803.908 194854.4562 189834.9415 158290.6105 177939.4903 203961.3509 150473.9968 1.081463164 1.358375948 1.637841099 1.048712145 1.294937732 1.261579711 1.051946608 1.18252651 1.355459117 1 17.19915467 -5.301682198 24.99850888 1.182353194 1.359142453 0.21322377 0.164868359 822.6431781 511017.4784 0.046446321 0.068892011 4.99E-06 5.301682198 0.176789258 SQDSYPGS(ph)PSLSPR ddPTM_HeLa_A486_30min_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;R4GMX8;Q6VN20-2;Q6VN20-3;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 0 SQDSYPGS(0.997)PS(0.003)LSPR 168.74 4.57E-12 205080000 165090 168370 199510 56270 232310 159790 179390 175660 179220 189490 TRUE FALSE FALSE 153518.0435 155027.748 276765.6151 130999.4037 203171.5136 140076.7344 134504.7246 135666.0526 194754.9339 142040.4706 1.080804948 1.091433641 1.948498297 0.922268162 1.430377643 0.986174812 0.946946487 0.955122523 1.371122843 1 17.11594252 -6.272229699 24.2496247 1.042510551 1.299019345 0.15485439 0.283101539 921.0542289 2069924.136 0.098361123 0.087638441 5.34E-07 6.272229699 0.256508794 SQDSYPVSPRPFSSPSMS(ph)PSHGMNIHNLASGK ddPTM_HeLa_A485_30min_R1 1 SQDSYPVSPRPFSSPSMSPSHGMNIHNLASGK 32 1 Q96S59-2;Q96S59-3;Q96S59 Q96S59-2 RANBP9 Ran-binding protein 9 1 0 SQDSYPVSPRPFSSPS(0.007)MS(0.963)PS(0.029)HGMNIHNLASGK 170.4 9.06E-15 732770000 176330 267550 186910 106270 331520 225150 299860 336720 189830 194260 TRUE FALSE FALSE 215554.0002 298837.6451 256055.787 112075.261 298512.7048 236938.5059 235792.4614 254138.892 227927.1398 145834.5571 1.478072169 2.049155228 1.755796377 0.768509627 2.046927084 1.624707549 1.616849024 1.742652065 1.562915843 1 17.1539731 -8.044694267 19.57358879 0.999999993 1.637985089 0.238836197 0.338128949 762.1511467 333781.5821 0.323454496 0.083519803 9.02E-09 8.044694267 0.637985096 SQDVAVS(ph)PQQQQCSK ddPTM_HeLa_A485_30min_R1 6 SQDVAVSPQQQQCSK 15 0 H3BQ37;H3BPW9;Q96F86;H3BTD6 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK ;;;;; 411.96 2.94E-152 11872810000 3187360 3310020 2613340 3498520 4267320 3335360 4763260 4847440 2866660 4431610 TRUE FALSE FALSE 3896377.236 3697098.046 3580123.216 3689635.289 3842450.637 3509994.292 3745550.589 3658597.74 3441972.367 3326891.185 1.171176639 1.111277117 1.076116716 1.109033955 1.154967333 1.0550373 1.125841027 1.09970466 1.034591207 1 21.66574325 -14 0.103037347 0.635465912 1.176990903 0.568874754 0.03312224 140.0716114 0.973636184 10.68787746 0.516890968 1.00E-14 14 0.541524991 SQDVAVS(ph)PQQQQCSK ddPTM_HeLa_A486_30min_R1 6 SQDVAVSPQQQQCSK 15 0 H3BQ37;H3BPW9;Q96F86;H3BTD6 H3BQ37 EDC3 Enhancer of mRNA-decapping protein 3 1 0 SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK ;;;;; 411.96 2.94E-152 11394270000 4318930 4479220 2977370 1702350 4825440 4621560 5474980 5339170 3748320 5401630 TRUE FALSE FALSE 4016195.31 4124270.294 4130287.401 3963156.832 4220188.32 4051398.916 4105082.096 4123557.544 4073227.396 4049026.689 0.991891538 1.018583134 1.020069196 0.978792469 1.04227229 1.000585876 1.013844168 1.018407104 1.005976919 1 21.94914372 -5.751585787 24.99992675 1.013804814 1.004761539 0.098561425 0.015885719 623.6092191 1582165.944 0.004553189 0.005811711 1.77E-06 5.751585787 -0.009043275 SQEDEISS(ph)PVNK ddPTM_HeLa_A485_30min_R1 3 SQEDEISSPVNK 12 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 SQEDEIS(0.016)S(0.984)PVNK;SQEDEIS(0.028)S(0.972)PVNK;SQEDEIS(0.025)S(0.975)PVNK ;; 257.15 2.69E-33 1910390000 4352640 3697370 2662700 5320850 5073020 3554750 5353080 5292370 3489440 7344600 TRUE FALSE FALSE 5320869.752 4129745.259 3647743.534 5611514.562 4567932.316 3740871.213 4209350.727 3994407.959 4189738.601 5513726.387 0.965022451 0.748993506 0.661575 1.017735406 0.828465541 0.678465152 0.763431195 0.724447983 0.759874231 1 22.39459625 -6.030546738 24.44958057 0.76519252 0.839796784 0.042603117 0.123166373 1468.73662 1175572.067 0.040076538 0.040132459 9.32E-07 6.030546738 0.074604264 SQEDEISS(ph)PVNK ddPTM_HeLa_A486_30min_R1 4 SQEDEISSPVNK 12 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 SQEDEIS(0.068)S(0.932)PVNK;SQEDEIS(0.071)S(0.929)PVNK;SQEDEIS(0.069)S(0.931)PVNK;SQEDEIS(0.012)S(0.988)PVNK ;;; 262.42 1.66E-33 2514950000 6714800 6253400 3145650 2364050 5136100 6253000 7423600 6789500 4500240 7534200 TRUE FALSE FALSE 6244127.195 5757857.81 4363729.923 5503627.872 4491882.446 5481568.436 5566136.761 5243679.064 4890324.427 5647587.281 1.105627392 1.019525246 0.772671533 0.974509574 0.795363086 0.970603581 0.98557782 0.928481279 0.865913918 1 22.42920323 -4.53192132 24.99006558 0.9108698 1.0841019 0.413138562 0.075085771 147.542675 407749.4097 0.018449018 0.048956151 2.94E-05 4.53192132 0.1732321 SQEEPKDT(ph)FEHDPSESIDEFNK ddPTM_HeLa_A485_30min_R1 3 SQEEPKDTFEHDPSESIDEFNK 22 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.305)QEEPKDT(0.653)FEHDPS(0.035)ES(0.008)IDEFNK;S(0.245)QEEPKDT(0.473)FEHDPS(0.128)ES(0.155)IDEFNK;S(0.012)QEEPKDT(0.96)FEHDPS(0.024)ES(0.004)IDEFNK ;; 214.11 9.21E-28 2113850000 1037738 633644 400579 1805200 908656 935125 1730610 1348550 720048 2717260 TRUE FALSE FALSE 1268579.238 707743.1538 548769.8416 1903813.505 818187.0182 984086.699 1360851.036 1017815.998 864555.0289 2039897.089 0.621883939 0.346950421 0.269018395 0.933288995 0.401092301 0.482419777 0.667117495 0.498954581 0.423822865 1 20.96006494 -11.08193186 2.481746151 1.773740258 0.515661421 0.396454874 0.179130031 12303712.25 4390900.639 53767532.29 0.044321702 8.28E-12 11.08193186 -1.258078837 SQEEPKDTFEHDPSES(ph)IDEFNK ddPTM_HeLa_A486_30min_R1 1 SQEEPKDTFEHDPSESIDEFNK 22 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SQEEPKDTFEHDPS(0.115)ES(0.885)IDEFNK 97.399 0.00043501 123480000 179220 152600 83208 107690 163890 210000 318960 299630 131190 353510 TRUE FALSE FALSE 166657.6035 140507.4202 115428.366 250707.7624 143333.388 184092.3351 239152.8344 231410.7899 142561.6548 264988.795 0.62892321 0.5302391 0.435597158 0.946107032 0.54090358 0.694717432 0.902501686 0.873285189 0.537991257 1 18.01557183 -4.97908359 0.091018552 1.237508546 1.12E-13 0.318211216 0.160143039 65.21713979 1.240213264 4.827867141 13.03184664 1.05E-05 4.97908359 -1.237508546 SQEPIPDDQKVS(ph)DDDKEK ddPTM_HeLa_A486_30min_R1 1 SQEPIPDDQKVSDDDKEK 18 2 E5RJU9;Q86UE4;H0YBJ8 E5RJU9 MTDH Protein LYRIC 1 0 SQEPIPDDQKVS(1)DDDKEK 143.25 2.51E-08 340180000 423510 303520 53316 567850 132890 537020 742230 457870 220200 1935100 TRUE FALSE FALSE 393824.136 279467.9698 73961.38305 1321983.498 116221.697 470767.9324 556516.2035 353622.9962 239287.1133 1450538.365 0.271502048 0.192664997 0.050988919 0.911374376 0.080123146 0.32454704 0.38366183 0.243787414 0.164964346 1 20.46815702 -10.80760374 2.75548541 1.207716346 0.295823236 0.462425891 0.229124241 61768623.98 46204563.28 85663238.18 0.057515367 1.56E-11 10.80760374 -0.911893109 SQEPIPDDQKVS(ph)DDDKEKGEGALPTGK ddPTM_HeLa_A485_30min_R1 3 SQEPIPDDQKVSDDDKEKGEGALPTGK 27 3 E5RJU9;Q86UE4;H0YBJ8 E5RJU9 MTDH Protein LYRIC 1 0 SQEPIPDDQKVS(1)DDDKEKGEGALPTGK;SQEPIPDDQKVS(1)DDDKEKGEGALPTGK;SQEPIPDDQKVS(1)DDDKEKGEGALPTGK ;; 220.83 1.97E-37 7355460000 2231773 745550 281569 7408940 925517 1328142 3242470 3203680 731324 18935330 TRUE FALSE FALSE 2728223.204 832735.5871 385733.0902 7813671.632 833369.2778 1397681.461 2549689.796 2417972.457 878094.0187 14215100.71 0.191924297 0.058581054 0.027135445 0.549674026 0.058625633 0.098323712 0.179364877 0.170098862 0.061771917 1 23.76092098 -11.02039598 3.880844079 2.011877828 0.156714796 0.758281384 0.143113597 0.033436086 0.000175725 0.003697818 0.033448566 9.54E-12 11.02039598 -1.855163031 SQEPIPDDQKVS(ph)DDDKEKGEGALPTGK ddPTM_HeLa_A486_30min_R1 2 SQEPIPDDQKVSDDDKEKGEGALPTGK 27 3 E5RJU9;Q86UE4;H0YBJ8 E5RJU9 MTDH Protein LYRIC 1 0 SQEPIPDDQKVS(1)DDDKEKGEGALPTGK;SQEPIPDDQKVS(1)DDDKEKGEGALPTGK ; 167.3 4.69E-13 3912490000 2786200 1873980 280330 4106300 1215370 3490000 5966100 3721800 1514630 13129900 TRUE FALSE FALSE 2590901.768 1725479 388881.2835 9559673.921 1062926.962 3059439.284 4473318.677 2874427.386 1645919.348 9842087.579 0.263247177 0.175316363 0.039512073 0.971305513 0.107998121 0.310852678 0.454509131 0.292054644 0.167232748 1 23.23053292 -11.1100867 2.509407408 2.294720973 0.314636289 0.41169938 0.247684172 20044510.02 6381773.73 147891202.8 0.060343086 7.76E-12 11.1100867 -1.980084684 SQEPLDLVLVPDDCRPGT(ph)PPSDLIEIQVVK ddPTM_HeLa_A486_30min_R1 1 SQEPLDLVLVPDDCRPGTPPSDLIEIQVVK 30 1 Q8NCA9 Q8NCA9 ZNF784 Zinc finger protein 784 1 0 SQEPLDLVLVPDDCRPGT(0.966)PPS(0.034)DLIEIQVVK 83.998 0.0013655 24094000 13745 20453 15810 9668.4 19387 21129 20168 22103 15217 19718 TRUE FALSE FALSE 12781.54648 18832.22979 21932.05541 22508.52381 16955.30168 18522.3188 15121.75308 17070.62941 16536.02181 14780.48446 0.864758291 1.274128047 1.48385227 1.522854266 1.147141133 1.253160467 1.023089137 1.154943835 1.118774006 1 13.85140594 -6.489223904 2.000335018 1.088297283 1.290527671 0.18502 0.177309515 0.587832559 4.702879866 0.083002982 0.065018029 3.24E-07 6.489223904 0.202230388 SQET(ph)PEKPR ddPTM_HeLa_A485_30min_R1 4 SQETPEKPR 9 1 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 S(0.014)QET(0.986)PEKPR;S(0.059)QET(0.941)PEKPR;S(0.03)QET(0.97)PEKPR;S(0.128)QET(0.872)PEKPR ;;; 92.856 0.0036719 2516930000 2024860 2062320 1546780 2700990 2669450 2269150 3266750 3301820 1843860 3442240 TRUE FALSE FALSE 2475283.121 2303490.384 2118998.289 2848538.244 2403670.185 2387959.185 2568782.176 2492043.468 2213905.789 2584152.918 0.957870219 0.891390896 0.819997251 1.102310248 0.930157874 0.924078126 0.994051922 0.964356037 0.856723986 1 21.30126001 -5.203379626 24.99999523 0.963654626 0.889916713 0.217793405 0.067158035 443.9408017 191155.8797 0.018037957 0.031242647 6.26E-06 5.203379626 -0.073737914 SQET(ph)PEKPR ddPTM_HeLa_A486_30min_R1 4 SQETPEKPR 9 1 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 SQET(1)PEKPR;S(0.001)QET(0.999)PEKPR;S(0.006)QET(0.994)PEKPR;S(0.016)QET(0.984)PEKPR ;;; 111.12 0.0010518 2475010000 2130490 2058210 1167060 1049090 2004520 2317480 2886300 2586210 1660100 2966030 TRUE FALSE FALSE 1981153.653 1895109.944 1618976.887 2442334.538 1753094.41 2031572.88 2164117.212 1997386.44 1803998.805 2223316.782 0.89108024 0.852379633 0.728180932 1.098509469 0.788504105 0.913757723 0.973373308 0.898381398 0.811399805 1 21.08428209 -5.209712785 24.99970842 0.917742341 0.826730334 0.200905705 0.092439573 620.5986358 299937.131 0.024256973 0.04201427 6.17E-06 5.209712785 -0.091012007 SQGDEAGGHGEDRPEPLS(ph)PK ddPTM_HeLa_A485_30min_R1 4 SQGDEAGGHGEDRPEPLSPK 20 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK ;;; 211.59 4.64E-27 13525810000 3642420 3564630 2439180 5652300 4585440 3830200 6495930 6259120 3088910 7989690 TRUE FALSE FALSE 4452663.763 3981482.47 3341534.185 5961070.837 4128897.493 4030743.349 5108021.489 4724061.006 3708825.904 5998007.322 0.742357174 0.663800869 0.557107387 0.993841874 0.688378202 0.672013743 0.851619749 0.787605075 0.61834301 1 22.51605185 -11.17343023 2.288545933 1.664633506 0.733516709 0.318262497 0.118231495 10131791.35 2194678.8 34908500.19 0.02931123 6.71E-12 11.17343023 -0.931116797 SQGDEAGGHGEDRPEPLS(ph)PK ddPTM_HeLa_A486_30min_R1 5 SQGDEAGGHGEDRPEPLSPK 20 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 0 SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK;SQGDEAGGHGEDRPEPLS(1)PK ;;;; 208.82 7.99E-27 16511860000 5604830 5449900 2773110 2694770 5062530 6416840 8602090 7578110 4442620 10055050 TRUE FALSE FALSE 5211960.36 5018030.076 3846932.458 6273560.746 4427540.281 5625195.522 6449756.098 5852739.782 4827709.879 7537200.033 0.691498214 0.665768462 0.510392777 0.832346325 0.587425073 0.746324298 0.85572309 0.776513792 0.64051768 1 22.84559725 -14 0.129262633 1.989200021 0.57763102 0.469712508 0.098719105 128.088095 1.045204592 32.84272301 0.763674801 1.00E-14 14 -1.411569 SQGS(ph)PEDSAPQASPGPSK ddPTM_HeLa_A485_30min_R1 2 SQGSPEDSAPQASPGPSK 18 0 Q9P107;Q9P107-2 Q9P107 GMIP GEM-interacting protein 1 0 SQGS(0.982)PEDS(0.018)APQASPGPSK;S(0.004)QGS(0.996)PEDSAPQASPGPSK ; 296.81 1.10E-78 122370000 183709 156237 133562 286730 214698 208633 300260 289500 155560 394630 TRUE FALSE FALSE 224574.4333 174507.5581 182972.1418 302393.3339 193321.9133 219556.7013 236106.9981 218499.6711 186779.4651 296256.0036 0.758041797 0.589043111 0.617614967 1.020716307 0.652550196 0.741104648 0.796969497 0.737536686 0.63046643 1 18.17648486 -11.36164019 2.327026547 2.881617834 0.729049012 0.326255171 0.1176141 6904442.067 693092.0566 68884867.29 0.030136187 4.35E-12 11.36164019 -2.152568822 SQGS(ph)PEDSAPQASPGPSK ddPTM_HeLa_A486_30min_R1 2 SQGSPEDSAPQASPGPSK 18 0 Q9P107;Q9P107-2 Q9P107 GMIP GEM-interacting protein 1 0 S(0.011)QGS(0.989)PEDSAPQASPGPSK;SQGS(0.998)PEDS(0.002)APQASPGPSK ; 272.06 5.71E-69 193932000 277830 288020 159575 176775 274430 350480 407590 381160 241710 492020 TRUE FALSE FALSE 258355.5517 265196.2462 221366.7136 411541.1337 240008.4304 307241.341 305606.671 294378.1887 262661.6174 368814.9895 0.700501767 0.719049534 0.600210729 1.115847093 0.650755629 0.833050038 0.828617816 0.79817306 0.712177175 1 18.49253777 -14 0.175942792 1.836952592 0.731538646 0.199109239 0.135088083 229.6933753 2.193276398 67.9599782 0.442218076 1.00E-14 14 -1.105413946 SQHVNGGVMNGLEQSEEVGQGMPLVS(ph)EGDRGSPFQEEEGSALK ddPTM_HeLa_A486_30min_R1 1 SQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGSPFQEEEGSALK 43 1 P48681 P48681 NES Nestin 1 0 SQHVNGGVMNGLEQSEEVGQGMPLVS(0.489)EGDRGS(0.489)PFQEEEGS(0.023)ALK 99.846 8.62E-06 48041000 25337 18094 14326 5950.4 23159 23229 23751 25048 16974 21906 TRUE FALSE FALSE 23561.00714 16660.16554 19873.41086 13852.83192 20254.18227 20363.24216 17808.24859 19345.11719 18445.31999 16420.59502 1.434844908 1.014589637 1.210273492 0.843625453 1.23346214 1.240103793 1.084506899 1.178100865 1.123303995 1 14.00321879 -5.136189076 0.014474737 1.26E-07 2.316227531 0.101250942 0.146396809 7040.025911 21.76499691 1610.727768 1876.362442 7.31E-06 5.136189076 2.316227404 SQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGS(ph)PFQEEEGSALK ddPTM_HeLa_A485_30min_R1 4 SQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGSPFQEEEGSALK 43 1 P48681 P48681 NES Nestin 1 0 SQHVNGGVMNGLEQSEEVGQGMPLVS(0.043)EGDRGS(0.956)PFQEEEGS(0.002)ALK;SQHVNGGVMNGLEQSEEVGQGMPLVS(0.029)EGDRGS(0.97)PFQEEEGS(0.001)ALK;SQHVNGGVMNGLEQSEEVGQGMPLVS(0.097)EGDRGS(0.902)PFQEEEGS(0.001)ALK;SQHVNGGVMNGLEQSEEVGQGMPLVS(0.004)EGDRGS(0.996)PFQEEEGSALK ;;; 318.46 2.46E-112 1844540000 228198 314812 309765 177690 403449 303070 396431 485122 316591 314941 TRUE FALSE FALSE 278959.8578 351626.5249 424359.9639 187396.7548 363280.201 318938.2766 311730.2783 366145.0689 380127.9098 236432.0048 1.179873504 1.487220502 1.794849916 0.792603163 1.536510259 1.348964058 1.318477499 1.548627349 1.607768416 1 17.85106581 SQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGS(ph)PFQEEEGSALK ddPTM_HeLa_A486_30min_R1 5 SQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGSPFQEEEGSALK 43 1 P48681 P48681 NES Nestin 1 0 SQHVNGGVMNGLEQSEEVGQGMPLVS(0.033)EGDRGS(0.963)PFQEEEGS(0.003)ALK;SQHVNGGVMNGLEQSEEVGQGMPLVS(0.013)EGDRGS(0.987)PFQEEEGSALK;SQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGS(1)PFQEEEGSALK;SQHVNGGVMNGLEQSEEVGQGMPLVS(0.152)EGDRGS(0.805)PFQEEEGS(0.042)ALK;SQHVNGGVMNGLEQSEEVGQGMPLVS(0.076)EGDRGS(0.923)PFQEEEGSALK ;;;; 226.32 1.83E-40 906063000 332003 327024 238939 37996.7 383654 294021 373662 361058 322944 227482 TRUE FALSE FALSE 308731.3042 301109.4272 331462.5798 88458.23785 335532.5379 257747.6784 280167.8154 278852.9752 350937.0459 170519.0265 1.810538744 1.765840642 1.943845133 0.518758755 1.967713191 1.511547911 1.643029644 1.635318832 2.058052131 1 17.3795732 SQIDVALS(ph)QDSTYQGER ddPTM_HeLa_A485_30min_R1 6 SQIDVALSQDSTYQGER 17 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 0 SQIDVALS(1)QDSTYQGER;SQIDVALS(0.991)QDS(0.009)TYQGER;SQIDVALS(0.997)QDS(0.002)TYQGER;SQIDVALS(1)QDSTYQGER;SQIDVALS(0.997)QDS(0.002)T(0.001)YQGER;SQIDVALS(0.872)QDS(0.127)TYQGER ;;;;; 396.19 6.23E-136 4018860000 1993949 2938020 2751980 1976693 3227140 2584740 2991340 3153730 2277520 2893720 TRUE FALSE FALSE 2437496.076 3281595.882 3770051.921 2084674.733 2905834.61 2720072.99 2352215.772 2380272.773 2734597.373 2172368.859 1.122045212 1.510607127 1.735456622 0.959632028 1.337634076 1.252122989 1.082788387 1.095703781 1.258808955 1 21.05083766 -5.270522244 24.99595632 1.155346668 1.461493409 0.394779948 0.178115342 661.2822567 1819841.519 0.050046016 0.075459519 5.36E-06 5.270522244 0.306146741 SQIDVALS(ph)QDSTYQGER ddPTM_HeLa_A486_30min_R1 6 SQIDVALSQDSTYQGER 17 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 0 SQIDVALS(0.981)QDS(0.008)T(0.01)YQGER;SQIDVALS(0.999)QDSTYQGER;SQIDVALS(1)QDSTYQGER;SQIDVALS(1)QDSTYQGER;SQIDVALS(0.999)QDS(0.001)TYQGER;SQIDVALS(0.999)QDS(0.001)TYQGER ;;;;; 341.1 4.60E-92 4560210000 2966170 3483720 2848420 1172854 3556390 2829140 3102600 3053710 2643350 3150380 TRUE FALSE FALSE 2758256.8 3207657.34 3951404.507 2730463.385 3110314.404 2480109.471 2326296.664 2358446.895 2872477.706 2361504.342 1.168008354 1.358311006 1.673257354 1.156238985 1.317090275 1.050224396 0.985090996 0.998705297 1.216376212 1 21.17127476 -6.059389953 1.710515101 1.042264801 1.375073287 0.478448348 0.147031972 0.315313385 1.854021434 0.058782677 0.06215746 8.72E-07 6.059389953 0.332808486 SQIHDIVLVGGSTR ddPTM_HeLa_A485_30min_R1 2 SQIHDIVLVGGSTR 14 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 111.92 0.00050744 131926000 147318 187085 190894 121797 245070 178817 212577 226475 185370 212904 FALSE FALSE TRUE 180088.3809 208962.9633 261513.6344 128450.4617 220669.9703 188179.5816 167158.1874 170931.6512 222572.0587 159830.951 1.126742848 1.307399862 1.63618894 0.803664502 1.380646045 1.177366339 1.045843664 1.069452757 1.392546671 1 17.28618729 -5.25342819 24.99669352 1.136744528 1.351839438 0.218300993 0.200624876 1007.386109 3143261.072 0.053426325 0.090514073 5.58E-06 5.25342819 0.21509491 SQIHDIVLVGGSTR ddPTM_HeLa_A486_30min_R1 1 SQIHDIVLVGGSTR 14 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 89.866 0.0044431 45407000 26997 31443 25501 4188 32816 26058 28142 29494 28655 22881 FALSE FALSE TRUE 25104.64971 28951.34217 35375.67014 9749.87565 28699.91128 22843.2289 21100.57394 22778.86005 31138.83847 17151.44867 1.463704332 1.687982323 2.062547067 0.568457851 1.673322868 1.331854197 1.230250246 1.328101229 1.815522355 1 14.06604282 -5.191080849 24.99994785 1.308559445 1.733067551 0.263468829 0.349747131 234.0156662 83149.92747 0.091676162 0.158787759 6.44E-06 5.191080849 0.424508106 SQLDDHPES(ph)DDEENFIDANDDEDMEK ddPTM_HeLa_A485_30min_R1 2 SQLDDHPESDDEENFIDANDDEDMEK 26 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 SQLDDHPES(1)DDEENFIDANDDEDMEK;S(0.005)QLDDHPES(0.995)DDEENFIDANDDEDMEK ; 384.83 1.75E-172 2519400000 718666 572699 420265 1080041 622442 522015 764783 673689 535439 1366367 TRUE FALSE FALSE 878530.7723 639671.1662 575738.5122 1139040.905 560469.489 549346.8982 601380.8643 508465.7164 642896.696 1025756.853 0.85647078 0.623608962 0.561281663 1.110439479 0.546396046 0.535552745 0.586280133 0.495698094 0.626753498 1 19.96825736 -4.254612561 23.18958417 0.659177498 0.856471041 0.063640946 0.197924144 807.539486 2742870.324 0.048952955 0.448348243 5.56E-05 4.254612561 0.197293542 SQLDDHPES(ph)DDEENFIDANDDEDMEK ddPTM_HeLa_A486_30min_R1 2 SQLDDHPESDDEENFIDANDDEDMEK 26 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 SQLDDHPES(1)DDEENFIDANDDEDMEK;SQLDDHPES(1)DDEENFIDANDDEDMEK ; 417.41 9.41E-191 3540600000 2247900 2209300 1040650 950890 1514450 2390700 2834900 2363900 1911530 3456000 TRUE FALSE FALSE 2090333.818 2034227.022 1443617.55 2213719.975 1324493.559 2095759.741 2125578.035 1825691.574 2077222.959 2590595.105 0.806893294 0.785235415 0.557253253 0.854521793 0.51127 0.808987764 0.820497974 0.704738293 0.801832349 1 21.30485212 -8.90341917 0.560982316 1.018416955 0.718085991 0.357659816 0.108403138 3.937263268 1.604292347 0.268585396 0.047181268 1.25E-09 8.90341917 -0.300330963 SQLDDHPES(ph)DDEENFIDANDDEDMEKFTDADK ddPTM_HeLa_A485_30min_R1 2 SQLDDHPESDDEENFIDANDDEDMEKFTDADK 32 1 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 SQLDDHPES(1)DDEENFIDANDDEDMEKFTDADK;S(0.001)QLDDHPES(0.999)DDEENFIDANDDEDMEKFTDADK ; 324.43 2.71E-110 374514000 150780 99159 49415 236292 98821 122407 204267 160362 91142 299394 TRUE FALSE FALSE 184320.4908 110754.7825 67695.66483 249200.0336 88982.03426 128816.0412 160623.6867 121032.9681 109433.3634 224760.5857 0.820074793 0.492767814 0.301190107 1.10873547 0.395896967 0.573125581 0.714643478 0.538497298 0.486888584 1 17.77802954 -10.39740774 5.668317391 1.000153365 0.600597559 0.227500516 0.219110966 0.000408399 4.34E-05 0.204026928 0.049465005 4.00E-11 10.39740774 -0.399555807 SQLDDHPES(ph)DDEENFIDANDDEDMEKFTDADKETEIVK ddPTM_HeLa_A485_30min_R1 3 SQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVK 38 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 SQLDDHPES(1)DDEENFIDANDDEDMEKFTDADKETEIVK;SQLDDHPES(1)DDEENFIDANDDEDMEKFTDADKETEIVK;SQLDDHPES(1)DDEENFIDANDDEDMEKFTDADKETEIVK ;; 248.75 1.91E-52 2875330000 232871 125970 76743 461788 207682 249742 457536 448549 153243 711640 TRUE FALSE FALSE 284672.3506 140701.0957 105133.4292 487014.3091 187004.4509 262818.1049 359779.6959 338541.6545 183997.4645 534241.2448 0.532853563 0.263366217 0.196790177 0.911599982 0.350037465 0.49194649 0.673440509 0.633686855 0.344408947 1 19.02713183 -14 0.158839461 2.828533575 0.355897408 0.3606741 0.203428074 148.4544759 1.35889526 85.98740686 0.888649324 1.00E-14 14 -2.472636167 SQLDDHPES(ph)DDEENFIDANDDEDMEKFTDADKETEIVK ddPTM_HeLa_A486_30min_R1 3 SQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVK 38 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 SQLDDHPES(1)DDEENFIDANDDEDMEKFTDADKETEIVK;SQLDDHPES(1)DDEENFIDANDDEDMEKFTDADKETEIVK;S(0.002)QLDDHPES(0.998)DDEENFIDANDDEDMEKFTDADKETEIVK ;; 423.01 1.72E-247 688240000 360098 260562 92585 258286 254475 459405 677906 648487 245227 800040 TRUE FALSE FALSE 334856.9897 239914.1182 128436.3915 601302.8611 222556.3726 402728.282 508286.7486 500840.6665 266483.4738 599704.7766 0.558369723 0.400053706 0.214166031 1.002664785 0.371109888 0.671544229 0.847561614 0.835145368 0.444357764 1 19.19389294 -5.753305255 0.126569437 1.162009656 3.55E-15 0.278886265 0.224533605 25.13090536 1.004458249 2.617889554 6.510854178 1.76E-06 5.753305255 -1.162009656 SQLLQYVYNLVPR ddPTM_HeLa_A485_30min_R1 2 SQLLQYVYNLVPR 13 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 ; ; 237.84 2.96E-29 134016000 42544 54605 55280 46845 69245 48100 74248 66734 44881 68225 FALSE FALSE TRUE 52007.76602 60990.57975 75730.37239 49404.02373 62350.72467 50618.44162 58384.30825 50367.38187 53888.20503 51217.76309 1.015424394 1.190809127 1.478595859 0.964587689 1.217365244 0.988298562 1.139923041 0.983396752 1.05213898 1 15.64435662 -5.939493194 1.317856327 1.037034659 1.202688844 0.188955555 0.136790385 0.713430284 2.583078586 0.057223605 0.068415184 1.15E-06 5.939493194 0.165654185 SQLLQYVYNLVPR ddPTM_HeLa_A486_30min_R1 2 SQLLQYVYNLVPR 13 0 A0A3B3ITP6;A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 0 0 ; ; 201.46 2.25E-14 115648000 33044 32931 27442 10759.8 38883 31378 39302 38753 31929 36002 FALSE FALSE TRUE 30727.78624 30321.42763 38068.27732 25049.35817 34005.93157 27506.90139 29468.22391 29929.78787 34696.63143 26986.86487 1.13862008 1.123562436 1.410622446 0.928205566 1.260091965 1.019269987 1.091946918 1.1090502 1.285685892 1 14.71996976 -5.267263221 24.99610894 1.106796288 1.214197729 0.168015524 0.1261733 952.1428954 4086628.818 0.034017065 0.052018665 5.40E-06 5.267263221 0.107401441 SQLPDLSGPHS(ph)YSPGR ddPTM_HeLa_A485_30min_R1 1 SQLPDLSGPHSYSPGR 16 0 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 SQLPDLS(0.059)GPHS(0.47)Y(0.002)S(0.47)PGR 50.132 0.036566 195730000 97598 98129 91785 100830 130720 94338 114490 112080 102760 177130 TRUE FALSE FALSE 119308.3384 109604.3329 125740.091 106338.0876 117705.0578 99277.39181 90028.2762 84592.20427 123382.9894 132974.7508 0.897225508 0.824249207 0.945593733 0.799686308 0.885168478 0.74658829 0.677032863 0.63615238 0.927867799 1 17.02079281 -6.260205667 24.95178686 0.767256826 0.868072166 0.067599137 0.109302366 199.0378971 4025556.748 0.035877144 0.034029286 5.49E-07 6.260205667 0.10081534 SQLQALHIGLDS(ph)SSIGSGPGDAEADDGFPESR ddPTM_HeLa_A485_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 S(0.011)QLQALHIGLDS(0.279)S(0.279)S(0.235)IGS(0.198)GPGDAEADDGFPESR 122.29 5.99E-06 111970000 7535.8 19091 15696 16410 23404 18493 23280 25642 13193 28380 TRUE FALSE FALSE 9212.112712 21323.52638 21502.60357 17306.43675 21073.81558 19461.26488 18306.03782 19353.25929 15840.71409 21305.3883 0.432384174 1.000851338 1.009256591 0.812303278 0.989130791 0.913443332 0.859221037 0.90837393 0.743507411 1 14.37893072 -4.254945983 24.89932543 0.912499755 0.432383945 0.743982864 0.084941624 353.1851541 1354272.538 0.020858293 0.193452652 5.56E-05 4.254945983 -0.48011581 SQLQALHIGLDS(ph)SSIGSGPGDAEADDGFPESR ddPTM_HeLa_A486_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 S(0.002)QLQALHIGLDS(0.319)S(0.319)S(0.319)IGS(0.041)GPGDAEADDGFPESR 78.784 0.00063214 326880000 16912 20173 23630 4371.4 29526 21095 27770 24388 18323 20598 TRUE FALSE FALSE 15726.55613 18574.41801 32780.16883 10176.84012 25822.57376 18492.51338 20821.65228 18835.38479 19911.25239 15440.12673 1.018550975 1.202996474 2.123050504 0.659116359 1.67243276 1.197691813 1.34854154 1.219898328 1.289578301 1 13.91439697 -8.87536293 0.554517285 0.978938029 1.333558978 0.059238511 0.365192151 10.55371389 4.31350716 0.859791384 0.159183003 1.33E-09 8.87536293 0.35462095 SQLQALHIGLDSS(ph)SIGS(ph)GPGDAEADDGFPESR ddPTM_HeLa_A485_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 2 0 SQLQALHIGLDS(0.066)S(0.512)S(0.421)IGS(1)GPGDAEADDGFPESR 208.35 2.22E-29 125350000 53161 77538 83437 48506 102530 67528 96776 92033 80581 94582 TRUE FALSE FALSE 64986.48105 86605.39461 114303.8184 51155.75996 92321.7532 71063.66166 76099.01701 69461.76245 96752.86757 71004.44805 0.915245211 1.219717877 1.609812083 0.720458526 1.300224926 1.000833942 1.071749997 0.978273395 1.362631078 1 16.11562178 -5.264590841 24.99958689 1.068899928 1.24540432 0.122072121 0.228311201 625.5899505 4962619.369 0.061909999 0.096303238 5.44E-06 5.264590841 0.176504391 SQLQALHIGLDSS(ph)SIGS(ph)GPGDAEADDGFPESR ddPTM_HeLa_A486_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 2 0 SQLQALHIGLDS(0.123)S(0.755)S(0.123)IGS(1)GPGDAEADDGFPESR 211.33 1.29E-29 175900000 60636 63451 75937 15874 93517 76888 89579 92834 77049 69376 TRUE FALSE FALSE 56385.72952 58422.91168 105341.8401 36955.47423 81787.22585 67402.3403 67165.38673 71697.72475 83727.66936 52003.79804 1.084261759 1.123435477 2.025656664 0.710630293 1.572716396 1.296104186 1.291547719 1.3787017 1.610029892 1 15.66632937 -4.55971016 24.99991804 1.368498334 1.094047385 0.086826175 0.33344312 331.593548 225073.3347 0.079305711 0.209824323 2.76E-05 4.55971016 -0.274450949 SQLQALHIGLDSS(ph)SIGSGPGDAEADDGFPESR ddPTM_HeLa_A485_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 SQLQALHIGLDS(0.07)S(0.533)S(0.371)IGS(0.027)GPGDAEADDGFPESR 213.34 5.07E-30 328290000 27330 32175 43197 30054 51671 35330 44516 52292 41446 45755 TRUE FALSE FALSE 33409.46421 35937.58636 59177.36788 31695.77392 46526.45381 37179.82417 35004.79294 39467.30501 49763.83203 34349.12056 0.972643947 1.04624473 1.722820466 0.922753579 1.354516595 1.082409784 1.019088476 1.149004818 1.448765826 1 15.06798554 -4.542099755 24.99992405 1.213163863 0.991043273 0.11524424 0.228961242 418.5471194 544384.8038 0.056329655 0.149077503 2.87E-05 4.542099755 -0.22212059 SQLQALHIGLDSS(ph)SIGSGPGDAEADDGFPESR ddPTM_HeLa_A486_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 SQLQALHIGLDS(0.084)S(0.456)S(0.456)IGS(0.004)GPGDAEADDGFPESR 117.39 2.99E-05 345630000 58142 65475 60636 15389 85986 54775 77148 92571 57854 61493 TRUE FALSE FALSE 54066.54605 60286.52254 84115.88309 35826.36972 75200.83409 48017.41741 57844.75441 71494.60411 62868.8313 46094.75255 1.172943623 1.307882551 1.824847264 0.77723315 1.631440239 1.041711144 1.25490975 1.551035642 1.363904302 1 15.4923149 -5.240732943 24.99422076 1.264158216 1.422490129 0.088011977 0.28651136 2634.741159 3180326.185 0.075373278 0.130373431 5.74E-06 5.240732943 0.158331913 SQLQALHIGLDSSS(ph)IGS(ph)GPGDAEADDGFPESR ddPTM_HeLa_A486_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 2 0 SQLQALHIGLDS(0.024)S(0.103)S(0.874)IGS(1)GPGDAEADDGFPESR 103.35 0.00012939 150920000 112870 141010 131120 51051 167390 140400 176000 137050 124100 126510 TRUE FALSE FALSE 104958.3959 129835.8541 181893.1755 118849.308 146394.3854 123078.8755 131962.9385 105846.7068 134857.0879 94831.07256 1.106793301 1.369127761 1.918075696 1.253273898 1.543738581 1.29787497 1.391558008 1.116160599 1.422077008 1 16.53307223 -8.126100293 0.487434118 0.997213061 1.451407154 0.227630577 0.217995266 1.78628541 1.004164994 0.282488632 0.127506068 7.48E-09 8.126100293 0.454194093 SQLQALHIGLDSSS(ph)IGSGPGDAEADDGFPESR ddPTM_HeLa_A485_30min_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 E9PF63;O75116;Q14DU5 E9PF63 ROCK2 Rho-associated protein kinase 2 1 0 SQLQALHIGLDS(0.057)S(0.345)S(0.541)IGS(0.057)GPGDAEADDGFPESR 146.56 1.28E-09 314270000 72080 92602 86223 62108 134100 103290 134140 121240 93754 99553 TRUE FALSE FALSE 88113.94733 103430.9984 118120.4757 65500.80277 120748.5331 108698.1047 105479.8932 91505.6999 112569.5678 74736.26924 1.178998473 1.383946502 1.580497353 0.87642591 1.615661771 1.454422408 1.411361502 1.224381426 1.506224073 1 16.18952093 -10.27817923 6.133679146 0.999986543 1.36007221 0.211562408 0.207963843 3.67E-05 4.32E-06 0.193035206 0.046816166 5.27E-11 10.27817923 0.360085667 SQMTQEAS(ph)DEAEDMKEAMNR ddPTM_HeLa_A485_30min_R1 1 SQMTQEASDEAEDMKEAMNR 20 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SQMT(0.001)QEAS(0.999)DEAEDMKEAMNR 176.44 1.65E-14 50490000 42816 40446 29873 64900 56714 47040 80341 86269 43522 94169 TRUE FALSE FALSE 52340.27149 45175.80787 40924.26582 68445.32266 51067.35503 49502.94166 63175.48902 65111.39249 52256.46619 70694.40135 0.740373643 0.639029499 0.578889771 0.968185901 0.722367741 0.700238501 0.89364204 0.921026153 0.739188185 1 16.10930834 -3.4524387 0.070507988 1.279093083 2.25E-10 0.382621816 0.107961808 155.0351834 1.372582001 6.369419663 22.5815116 0.000352827 3.4524387 -1.279093083 SQNHS(ph)RS(ph)PS(ph)EER ddPTM_HeLa_A485_30min_R1 2 SQNHSRSPSEER 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 3 0 S(0.002)QNHS(0.998)RS(1)PS(1)EER;S(0.001)QNHS(0.999)RS(1)PS(1)EER ; 87.419 0.0047242 1024020000 932710 1495870 1209940 971790 1313530 1160530 1418240 1578710 1474690 1465510 TRUE FALSE FALSE 1140188.122 1670798.984 1657547.156 1024876.427 1182750.341 1221293.556 1115221.438 1191528.897 1770646.756 1100185.328 1.03636005 1.518652305 1.506607218 0.931548896 1.075046459 1.110079843 1.013666889 1.08302562 1.609407717 1 20.06931514 -5.255002663 24.96417654 1.114589378 1.370351096 0.20325242 0.213624525 776.4827652 3011502.931 0.058216282 0.097822588 5.56E-06 5.255002663 0.255761718 SQNHS(ph)RS(ph)PS(ph)EER ddPTM_HeLa_A486_30min_R1 2 SQNHSRSPSEER 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 3 0 S(0.005)QNHS(0.995)RS(1)PS(1)EER;S(0.021)QNHS(0.979)RS(1)PS(1)EER ; 86.573 0.0049024 814020000 1324810 1224920 1156960 177812 1116150 1400470 1171050 1095180 1426360 1013960 TRUE FALSE FALSE 1231947.66 1127852.878 1604965.896 413955.3221 976152.0593 1227694.25 878040.9039 845831.4216 1549998.033 760057.8162 1.620860458 1.483904058 2.111636592 0.544636623 1.284312902 1.615264292 1.155229096 1.112851422 2.039315957 1 19.53574964 -5.229292863 24.99840751 1.267603316 1.713310581 0.240825491 0.395903388 1060.110145 824382.4813 0.105933351 0.183463557 5.90E-06 5.229292863 0.445707265 SQNHS(ph)RS(ph)PSEER ddPTM_HeLa_A485_30min_R1 1 SQNHSRSPSEER 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 2 0 S(0.083)QNHS(0.917)RS(0.96)PS(0.039)EER 77.505 0.0085106 200640000 194730 320510 257940 147320 310290 258820 339930 360000 305080 240770 TRUE FALSE FALSE 238047.0167 357990.8564 353362.7398 155367.7186 279396.4381 272371.415 267301.1785 271709.4355 366306.7576 180750.47 1.316992518 1.980580501 1.954975496 0.859570205 1.54575774 1.506891877 1.478840849 1.503229482 2.026588133 1 17.46363987 SQNHS(ph)RS(ph)PSEER ddPTM_HeLa_A486_30min_R1 1 SQNHSRSPSEER 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 2 0 S(0.016)QNHS(0.755)RS(0.614)PS(0.614)EER 70.334 0.013302 246380000 283750 183570 298190 33734 281510 287300 267940 236090 343510 178400 TRUE FALSE FALSE 263860.5903 169023.2446 413657.1538 78534.45682 246200.3908 251855.8471 200898.578 182337.4608 373285.7234 133727.4788 1.9731217 1.263938019 3.093284622 0.587272395 1.841060588 1.883351494 1.502298404 1.363500325 2.791391318 1 17.02893642 -5.265666389 24.9994711 1.604034826 2.025497058 0.110555411 0.688024103 1014.138097 5997845.228 0.185371788 0.286245191 5.42E-06 5.265666389 0.421462232 SQNRPQGQSTQPSNAAGTNTTSAST(ph)PR ddPTM_HeLa_A486_30min_R1 1 SQNRPQGQSTQPSNAAGTNTTSASTPR 27 1 Q9UHD9 Q9UHD9 UBQLN2 Ubiquilin-2 1 0 SQNRPQGQSTQPSNAAGTNTTSAS(0.054)T(0.946)PR 159.25 3.20E-10 112560000 18266 15661 12421 6083 18960 20163 15469 20398 16280 20372 TRUE FALSE FALSE 16985.64773 14419.96532 17230.74385 14161.53142 16581.86001 17675.49406 11598.49259 15753.82069 17691.16351 15270.7186 1.112301796 0.944288589 1.128351867 0.927365096 1.085859837 1.157476247 0.759525003 1.031635845 1.158502358 1 13.89848033 SQPPGEDS(ph)DT(ph)DVDDDSRPPGRPAEVHLER ddPTM_HeLa_A485_30min_R1 2 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 SQPPGEDS(1)DT(1)DVDDDSRPPGRPAEVHLER;SQPPGEDS(1)DT(1)DVDDDSRPPGRPAEVHLER ; 190.85 4.31E-20 4790150000 164922 227742 179036 182330 303811 184634 248522 287941 190480 238305 TRUE FALSE FALSE 201608.3299 254374.4458 245268.8667 192290.2262 273562.5101 194301.1507 195423.2445 217323.0183 228707.5888 178899.9492 1.126933411 1.42188104 1.370983434 1.074847853 1.52913688 1.086088351 1.092360536 1.214774064 1.278410586 1 17.44879345 SQPPGEDS(ph)DT(ph)DVDDDSRPPGRPAEVHLER ddPTM_HeLa_A486_30min_R1 1 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 SQPPGEDS(1)DT(1)DVDDDSRPPGRPAEVHLER 179.85 1.21E-19 3538300000 73196 78078 0 53046 96769 98602 176710 76847 74079 104100 TRUE FALSE FALSE 68065.33838 71890.81492 0 123493.7688 84631.32968 86437.48775 132495.289 59350.61566 80500.22737 78032.68242 0.872267059 0.921291088 0 1.582590332 1.08456261 1.107708784 1.697946102 0.760586639 1.031621942 1 16.25179087 -5.276973597 24.99924096 1.185243868 0.630196468 0.368760701 0.348658455 878.7800204 1414220.114 0.097876345 0.145759441 5.28E-06 5.276973597 -0.5550474 SQPPGEDS(ph)DTDVDDDSRPPGRPAEVHLER ddPTM_HeLa_A485_30min_R1 1 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SQPPGEDS(0.998)DT(0.002)DVDDDSRPPGRPAEVHLER 192.52 2.70E-21 1041800000 130420 173360 188170 140750 244420 211390 229470 250960 201060 216990 TRUE FALSE FALSE 159431.4791 193632.944 257781.9134 148438.8161 220084.6866 222458.0535 180441.8599 189411.6665 241410.8978 162898.3864 0.978717362 1.188673186 1.582470638 0.911235644 1.351055044 1.36562466 1.107695809 1.162759624 1.481972309 1 17.31361279 -4.30877998 4.555956842 1.25009408 0.970856881 0.136471841 0.198595319 0.331498958 14.53515531 0.047317811 0.25154741 4.91E-05 4.30877998 -0.279237199 SQPPGEDS(ph)DTDVDDDSRPPGRPAEVHLER ddPTM_HeLa_A486_30min_R1 2 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SQPPGEDS(0.995)DT(0.005)DVDDDSRPPGRPAEVHLER;SQPPGEDS(0.999)DT(0.001)DVDDDSRPPGRPAEVHLER ; 192.8 2.53E-21 1200490000 151519 171905 181531 66054 244801 170802 177768 172799 151865 164836 TRUE FALSE FALSE 140898.3005 158282.6217 251824.6648 153777.0502 214095.7759 149730.1858 133288.5662 133456.4399 165028.7805 123559.9927 1.140322992 1.28101838 2.038076074 1.244553733 1.732727327 1.211801511 1.078735627 1.080094268 1.335616625 1 16.91485217 -6.447935414 7.315790276 1.132160746 1.492443673 0.319441689 0.254972729 0.343474193 29.44436829 0.090368878 0.079283111 3.57E-07 6.447935414 0.360282927 SQPS(ph)S(ph)GDEDS(ph)DDASSHR ddPTM_HeLa_A485_30min_R1 1 SQPSSGDEDSDDASSHR 17 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 3 0 S(0.002)QPS(0.999)S(1)GDEDS(1)DDASSHR 82.609 0.00024017 0 44784 69050 68662 53310 80184 57723 77806 79945 60242 77858 TRUE FALSE FALSE 54746.0463 77124.79684 94062.93106 56222.19031 72200.59942 60745.28702 61182.11248 60338.3634 72332.01683 58449.43347 0.936639468 1.319513163 1.60930441 0.96189453 1.235266026 1.039279312 1.046752874 1.032317335 1.237514421 1 15.83490142 -5.322389229 24.99999488 1.083862076 1.291596333 0.233319083 0.173831915 339.6491644 139314.1392 0.048889468 0.072514777 4.76E-06 5.322389229 0.207734257 SQQNDCANKENIVNSFTDKQQT(ph)PEKLPIPMIAK ddPTM_HeLa_A486_30min_R1 1 SQQNDCANKENIVNSFTDKQQTPEKLPIPMIAK 33 3 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 SQQNDCANKENIVNSFTDKQQT(1)PEKLPIPMIAK 93.146 7.05E-05 265240000 363330 218370 71512 221680 232080 380150 606660 562270 184610 651310 TRUE FALSE FALSE 337862.4432 201065.5659 99203.36156 516082.2431 202970.3623 333250.9581 454867.2514 434253.3953 200612.1434 488217.7367 0.6920323 0.411835849 0.203194915 1.057073933 0.415737379 0.68258675 0.931689321 0.889466651 0.410907119 1 18.89716518 -5.253310435 24.99877913 0.753410984 0.433302524 0.29322547 0.236645643 817.5899163 2514312.323 0.063589605 0.107734444 5.58E-06 5.253310435 -0.32010846 SQQQPTPVT(ph)PK ddPTM_HeLa_A485_30min_R1 4 SQQQPTPVTPK 11 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 SQQQPTPVT(1)PK;SQQQPTPVT(1)PK;SQQQPT(0.002)PVT(0.998)PK;SQQQPT(0.004)PVT(0.996)PK ;;; 190.34 3.91E-10 5148100000 2525930 2317320 1699390 3869720 3165470 2503110 4424040 4089080 2006600 5178410 TRUE FALSE FALSE 3087814.414 2588310.416 2328065.079 4081113.005 2850304.692 2634168.969 3478807.713 3086226.719 2409306.214 3887527.689 0.79428744 0.66579858 0.598854919 1.049796511 0.733192126 0.677594909 0.894863778 0.793879032 0.619752811 1 21.89042152 -11.48155538 2.252875201 3.897709811 0.761707066 0.239059237 0.12906626 3162026.302 492709.706 46616683.7 0.032562803 3.30E-12 11.48155538 -3.136002745 SQQQPTPVT(ph)PK ddPTM_HeLa_A486_30min_R1 4 SQQQPTPVTPK 11 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 SQQQPT(0.003)PVT(0.997)PK;SQQQPTPVT(1)PK;SQQQPT(0.001)PVT(0.999)PK;SQQQPTPVT(1)PK ;;; 205.26 3.91E-14 5198000000 4561750 4174470 1974590 2499570 3742620 4705110 6509380 5879610 3144330 7072100 TRUE FALSE FALSE 4241994.882 3843669.794 2739204.129 5819125.281 3273185.701 4124641.366 4880664.275 4540951.154 3416883.056 5301200.128 0.800195197 0.725056535 0.516713963 1.097699604 0.617442395 0.778058037 0.920671576 0.856589271 0.644548965 1 22.33788757 -14 0.169543554 1.829744927 0.725241597 0.148388538 0.15716419 258.6349367 2.435296059 72.81997964 0.563099262 1.00E-14 14 -1.10450333 SQQTLDT(ph)PK ddPTM_HeLa_A486_30min_R1 1 SQQTLDTPK 9 0 Q5T6F2;H0YDN2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 SQQT(0.003)LDT(0.997)PK 96.067 0.012458 104460000 287740 281830 135750 176100 233190 315630 380710 347190 206000 468500 TRUE FALSE FALSE 267570.9119 259496.7644 188316.0355 409969.6996 203941.1358 276690.7797 285452.3313 268142.4161 223856.2459 351184.5506 0.76190969 0.738918509 0.536230979 1.167391045 0.580723541 0.787878565 0.812827133 0.763537051 0.63743193 1 18.42186985 -10.00155002 4.167063649 1.00001605 0.757295652 0.169074424 0.163404366 208067158.1 403776112.8 49013.14219 0.038749543 9.96E-11 10.00155002 -0.242720398 SQRPFS(ph)PR ddPTM_HeLa_A485_30min_R1 3 SQRPFSPR 8 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 SQRPFS(1)PR;SQRPFS(1)PR;SQRPFS(1)PR ;; 73.632 0.0068087 4738200000 1559480 2028430 1969260 1621950 2488400 1901800 2424450 2617290 1731280 2217880 TRUE FALSE FALSE 1906380.946 2265637.244 2697771.222 1710553.022 2240646.159 2001375.307 1906446.452 1975395.524 2078732.016 1665003.333 1.144971249 1.360740365 1.620279773 1.027357115 1.345730735 1.202024805 1.145010592 1.186421363 1.248485198 1 20.66709363 -8.312321097 0.203145215 0.90340544 1.38569842 0.239257568 0.149605381 7.515762069 0.933072848 1.171937355 0.590115418 4.87E-09 8.312321097 0.48229298 SQRPFS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SQRPFSPR 8 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 SQRPFS(1)PR 60.598 0.016002 1616000000 351340 359930 296710 127210 416000 325000 395340 409800 305150 361170 TRUE FALSE FALSE 326712.8803 331407.836 411604.0582 296151.3088 363821.401 284904.8044 296421.7505 316497.4859 331600.6477 270730.6812 1.20678188 1.224123673 1.520345076 1.093896368 1.343849908 1.052355068 1.0948953 1.169049199 1.224835864 1 18.04649887 -6.26147631 25 1.117959423 1.278075325 0.341472409 0.117353915 4.243930305 2871920.43 0.0395368 0.037088681 5.48E-07 6.26147631 0.160115902 SQRYS(ph)GAYGASVSDEELK ddPTM_HeLa_A485_30min_R1 4 SQRYSGAYGASVSDEELK 18 1 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 S(0.455)QRYS(0.545)GAYGASVSDEELK;S(0.101)QRYS(0.899)GAYGASVSDEELK;S(0.103)QRYS(0.897)GAYGASVSDEELK;S(0.009)QRYS(0.991)GAYGASVSDEELK ;;; 252.04 4.15E-47 5927270000 2320150 2426740 1439980 3599790 3305620 2719700 4828220 5191500 2158340 5676900 TRUE FALSE FALSE 2836259.363 2710526.133 1972688.525 3796437.413 2976500.866 2862099.287 3796631.354 3918276.485 2591499.041 4261753.306 0.665514674 0.636011974 0.462881913 0.890815854 0.698421671 0.671577889 0.890861362 0.919404809 0.608082837 1 22.02301565 -4.850421028 0.075574957 1.313187931 3.72E-09 0.367812799 0.128715519 89.57875756 1.326397567 7.115632051 17.11480232 1.41E-05 4.850421028 -1.313187927 SQRYS(ph)GAYGASVSDEELK ddPTM_HeLa_A486_30min_R1 4 SQRYSGAYGASVSDEELK 18 1 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 S(0.038)QRYS(0.962)GAYGASVSDEELK;S(0.175)QRYS(0.825)GAYGASVSDEELK;S(0.249)QRYS(0.751)GAYGASVSDEELK;S(0.056)QRYS(0.944)GAYGASVSDEELK ;;; 221.21 1.02E-34 5780400000 2305490 2002600 1166510 1644410 2221890 2716060 4117880 3870770 1745850 4003080 TRUE FALSE FALSE 2143887.057 1843906.683 1618213.912 3828269.584 1943199.838 2380980.132 3087542.87 2989480.169 1897181.684 3000682.712 0.714466427 0.61449572 0.539281913 1.275799527 0.647585908 0.793479471 1.028946798 0.996266669 0.632250013 1 21.51685935 SQRYS(ph)GAYGASVSDEELKR ddPTM_HeLa_A485_30min_R1 1 SQRYSGAYGASVSDEELKR 19 2 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 S(0.013)QRYS(0.944)GAYGAS(0.027)VS(0.016)DEELKR 80.847 0.0016364 657050000 94518 112930 71263 119630 179150 134490 231420 253290 119090 242790 TRUE FALSE FALSE 115543.203 126136.1811 97626.1492 126165.084 161313.197 141531.6884 181975.2265 191170.2304 142990.2706 182266.9212 0.633923052 0.692040993 0.53562187 0.692199567 0.88503825 0.776507813 0.998399629 1.048847641 0.784510265 1 17.47569323 -5.918281554 1.277583501 0.947156487 0.619476805 0.697325524 0.090373922 0.246501389 0.842873608 0.038272491 0.046933747 1.21E-06 5.918281554 -0.327679681 SQRYS(ph)GAYGASVSDEELKR ddPTM_HeLa_A486_30min_R1 3 SQRYSGAYGASVSDEELKR 19 2 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 S(0.143)QRYS(0.852)GAYGAS(0.004)VSDEELKR;SQRYS(1)GAYGASVSDEELKR;SQRYS(1)GAYGASVSDEELKR ;; 223.18 3.95E-35 1090650000 402084 347014 240474 192196 439249 439950 548180 563149 344416 588188 TRUE FALSE FALSE 373899.988 319515.3468 333591.9729 447442.001 384154.2946 385673.4421 411019.5659 434932.2662 374270.2562 440901.8963 0.848034429 0.724685808 0.756612697 1.014833469 0.871291999 0.874737544 0.932224536 0.986460412 0.848874226 1 18.75009816 -5.243699566 24.91898354 0.927082544 0.77126844 0.580435956 0.060676382 550.3546797 773077.9686 0.01598389 0.027607571 5.71E-06 5.243699566 -0.155814104 SQS(ph)DLSSR ddPTM_HeLa_A485_30min_R1 2 SQSDLSSR 8 0 Q1W6H9 Q1W6H9 FAM110C Protein FAM110C 1 0 S(0.066)QS(0.924)DLS(0.009)S(0.001)R;SQS(0.999)DLS(0.001)SR ; 158.08 1.98E-06 373660000 508140 759540 653120 558050 787800 675450 760270 835400 634980 787360 TRUE FALSE FALSE 621173.9899 848361.5959 894736.2666 588534.8584 709363.8659 710815.5176 597832.1037 630516.8401 762414.6616 591085.6423 1.050903533 1.435260029 1.513716799 0.995684578 1.200103361 1.202559268 1.011413678 1.066709788 1.289854815 1 19.17300765 -5.269210669 24.99826734 1.115823442 1.343490114 0.33346998 0.144596294 652.3165443 2098335.388 0.04038469 0.061158479 5.38E-06 5.269210669 0.227666672 SQS(ph)DLSSSSSR ddPTM_HeLa_A486_30min_R1 2 SQSDLSSSSSR 11 0 J3KP75 J3KP75 PHACTR2 Phosphatase and actin regulator 1 0 S(0.001)QS(0.997)DLS(0.002)SSSSR;SQS(0.997)DLS(0.003)SSSSR ; 185.2 1.44E-10 356610000 391960 415980 330320 125198 448470 360660 406500 410160 337700 405660 TRUE FALSE FALSE 364485.6281 383016.2298 458228.7503 291467.2712 392218.7108 316165.4361 304789.4005 316775.5217 366972.1079 304080.0956 1.198650071 1.259589942 1.50693438 0.958521374 1.289853287 1.039743938 1.002332625 1.04175027 1.206827126 1 18.21409186 -5.2717502 24.97442532 1.082948585 1.31551132 0.465469929 0.120003128 619.165823 1499716.157 0.033478599 0.050289719 5.35E-06 5.2717502 0.232562735 SQS(ph)ES(ph)SDEVTELDLSHGKK ddPTM_HeLa_A485_30min_R1 1 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 2 0 S(0.099)QS(0.897)ES(0.54)S(0.462)DEVT(0.001)ELDLSHGKK 104.33 0.00011147 350670000 387450 297310 183440 457920 416420 404860 622370 665990 306250 718360 TRUE FALSE FALSE 473636.9158 332077.8182 251302.0896 482935.0101 374959.7627 426057.8436 489395.5652 502654.9083 367711.5659 539286.0724 0.878266545 0.615773029 0.46599032 0.895508033 0.695289164 0.79004051 0.907487863 0.932074708 0.681848808 1 19.04069125 -6.149856108 1.116266474 0.874898764 0.675581084 0.243330589 0.138326268 0.703270496 1.836100458 0.070041683 0.070217638 7.08E-07 6.149856108 -0.19931768 SQS(ph)ES(ph)SDEVTELDLSHGKK ddPTM_HeLa_A486_30min_R1 2 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 2 0 S(0.115)QS(0.879)ES(0.643)S(0.363)DEVTELDLSHGKK;S(0.15)QS(0.847)ES(0.699)S(0.303)DEVTELDLSHGKK ; 158.97 2.03E-09 428320000 893040 725950 349090 404700 746970 938640 1228850 1158980 566240 1336860 TRUE FALSE FALSE 830442.5077 668423.0781 484266.997 942162.0524 653278.0574 822840.1402 921378.7326 895105.5544 615322.1391 1002101.555 0.828700947 0.667021297 0.483251418 0.9401862 0.651908037 0.821114523 0.919446466 0.893228386 0.614031718 1 19.93459729 -5.955507017 1.171001001 0.84703482 0.686345393 0.162219799 0.146199199 0.875813763 2.535658448 0.06551611 0.078799301 1.11E-06 5.955507017 -0.160689427 SQS(ph)FALR ddPTM_HeLa_A486_30min_R1 2 SQSFALR 7 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 SQS(1)FALR;SQS(1)FALR ; 163.38 0.00036425 549370000 700700 827030 683310 309720 871650 823280 948250 1087530 549260 611120 TRUE FALSE FALSE 651584.5484 761493.1308 947905.9317 721043.8124 762319.5292 721712.0841 710987.8204 839923.1596 596870.299 458091.5743 1.422389289 1.662316387 2.069249873 1.574016753 1.66412039 1.57547557 1.552064828 1.833526759 1.302949743 1 18.8052765 -7.976822059 4.451400928 1.001691786 1.670276064 0.626458769 0.167853012 0.106425434 5.381786274 0.164214748 0.042992207 1.05E-08 7.976822059 0.668584277 SQS(ph)FSHQQPSR ddPTM_HeLa_A485_30min_R1 3 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 0 S(0.237)QS(0.73)FS(0.033)HQQPSR;S(0.021)QS(0.948)FS(0.031)HQQPSR;SQS(0.99)FS(0.01)HQQPSR ;; 169.58 9.88E-10 1343640000 669662 894565 857478 629875 1098673 806839 1001187 1016913 823827 856442 TRUE FALSE FALSE 818626.0016 999176.5951 1174694.795 664283.4763 989285.2584 849083.8424 787275.2185 767513.4923 989161.5223 642946.771 1.273240707 1.554058034 1.827048284 1.033185804 1.538673655 1.320612966 1.224479621 1.193743443 1.538481204 1 19.29433978 -13.00660058 0.100708695 4.72E-14 1.668086249 0.232212154 0.216437986 206.8679133 1.752810368 46.95100249 3.816399352 9.85E-14 13.00660058 1.668086249 SQS(ph)FSHQQPSR ddPTM_HeLa_A486_30min_R1 3 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 0 S(0.186)QS(0.725)FS(0.089)HQQPSR;S(0.267)QS(0.722)FS(0.011)HQQPSR;S(0.001)QS(0.998)FS(0.001)HQQPSR ;; 106.58 0.00050672 1115773000 767608 870056 757714 146501.5 949754 758907 832494 886743 745080 731019 TRUE FALSE FALSE 713802.6431 801109.5939 1051121.153 341062.8958 830626.9972 665280.7703 624195.196 684850.9764 809664.1343 547967.0843 1.302637811 1.461966634 1.918219512 0.622414933 1.515833745 1.214088929 1.139110749 1.249803129 1.477578047 1 19.06372971 -5.237643333 24.99992456 1.198971762 1.551043744 0.289220702 0.275841408 1097.42894 1152948.264 0.072421943 0.125349582 5.79E-06 5.237643333 0.352071982 SQS(ph)FSK ddPTM_HeLa_A485_30min_R1 1 SQSFSK 6 0 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 SQS(1)FSK 119.07 0.0067071 455400000 647600 690580 384370 818870 448670 670080 714360 914850 609980 1049900 TRUE FALSE FALSE 791656.3858 771337.3238 526564.458 863602.7946 403998.8394 705164.3527 561731.1502 690481.6031 732397.3909 788179.252 1.004411603 0.978631855 0.668077035 1.095693388 0.512572284 0.894675102 0.712694668 0.876046409 0.929226935 1 19.58816425 -4.55944215 24.47343912 0.826844817 0.997966844 0.129604013 0.160253655 205.3892302 137474.9554 0.037993683 0.100522603 2.76E-05 4.55944215 0.171122027 SQS(ph)GEDESMNQPGPIK ddPTM_HeLa_A486_30min_R1 1 SQSGEDESMNQPGPIK 16 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 0 SQS(1)GEDESMNQPGPIK 400.27 2.49E-136 221350000 325430 377070 227180 129100 360380 412690 427470 409980 317390 452700 TRUE FALSE FALSE 302619.0375 347189.5999 315150.1801 300551.3244 315177.78 361776.5037 320512.4847 316636.5038 344901.6208 339340.9734 0.891784551 1.023129027 0.92871243 0.885691231 0.928793764 1.066115005 0.944514544 0.93309246 1.016386607 1 18.37237611 SQS(ph)GGYSDR ddPTM_HeLa_A485_30min_R1 1 SQSGGYSDR 9 0 F6WMK9;K7EMY9;K7EPM4;K7EQR7;D6W5Y5;Q14011;Q14011-3;Q14011-2 F6WMK9 CIRBP Cold-inducible RNA-binding protein 1 0 S(0.015)QS(0.984)GGYSDR 119.74 0.00047482 809550000 550400 680200 595980 624820 724260 621650 741830 834260 730560 739040 TRUE FALSE FALSE 672834.5811 759743.473 816457.8028 658952.3345 652150.1314 654198.6327 583331.9603 629656.4269 877176.6909 554810.929 1.212727699 1.369373661 1.471596467 1.187706118 1.175445719 1.17913797 1.051406758 1.13490271 1.581037152 1 19.08163668 -5.297985446 21.54619154 1.186241566 1.353046618 0.187231403 0.156698686 180.0316351 106139.0871 0.043931405 0.065167617 5.04E-06 5.297985446 0.166805052 SQS(ph)GTLDGESAAWSASGEDSR ddPTM_HeLa_A485_30min_R1 2 SQSGTLDGESAAWSASGEDSR 21 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 S(0.009)QS(0.99)GT(0.001)LDGESAAWSASGEDSR;S(0.097)QS(0.902)GT(0.001)LDGESAAWSASGEDSR ; 263.3 4.50E-59 568710000 222559 312430 286140 269290 369730 312550 387550 431630 289200 393780 TRUE FALSE FALSE 272066.4817 348965.9707 391995.0933 284000.6308 332918.383 328914.6347 304746.7765 325772.0657 347239.7873 295617.893 0.920331577 1.180462952 1.326019509 0.960701763 1.126178052 1.112634392 1.030880687 1.102003882 1.174623714 1 18.17337407 -5.316215975 24.99999621 1.078865286 1.146094267 0.076223936 0.109586493 850.913317 388354.5374 0.030934351 0.045883085 4.83E-06 5.316215975 0.067228981 SQS(ph)GTLDGESAAWSASGEDSR ddPTM_HeLa_A486_30min_R1 2 SQSGTLDGESAAWSASGEDSR 21 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4 P49815-5 TSC2 Tuberin 1 0 S(0.01)QS(0.99)GTLDGESAAWSASGEDSR;S(0.002)QS(0.997)GT(0.001)LDGESAAWSASGEDSR ; 336.27 1.95E-114 590450000 410830 424600 379300 130205 516830 424150 426090 473230 399280 477310 TRUE FALSE FALSE 382032.9385 390953.1496 526175.118 303123.8202 452004.3622 371822.6854 319477.7753 365485.8595 433889.9119 357788.4692 1.06776202 1.092693542 1.470631849 0.847215174 1.263328478 1.039224898 0.89292362 1.021513802 1.21269954 1 18.44874737 -6.486827591 23.50878541 1.023933799 1.146899412 0.108294619 0.164543283 653.9466279 426435.6683 0.057017253 0.050258694 3.26E-07 6.486827591 0.122965613 SQS(ph)IEQESQEK ddPTM_HeLa_A485_30min_R1 4 SQSIEQESQEK 11 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 SQS(0.975)IEQES(0.025)QEK;SQS(1)IEQESQEK;SQS(1)IEQESQEK;SQS(1)IEQESQEK ;;; 283.05 4.78E-35 4158970000 2359170 2022700 1654920 3334730 3077600 2438880 3813530 3263090 2194850 4651180 TRUE FALSE FALSE 2883959.227 2259237.17 2267143.775 3516897.856 2771183.338 2566575.986 2998738.162 2462812.061 2635336.263 3491726.425 0.825940774 0.647025825 0.649290208 1.007208878 0.793642743 0.735044982 0.85881246 0.705327898 0.754737325 1 21.7355091 -11.42798281 2.182773623 2.939720896 0.774336654 0.306360927 0.101457473 11416559.45 840898.2313 109739669 0.027663088 3.73E-12 11.42798281 -2.165384242 SQS(ph)IEQESQEK ddPTM_HeLa_A486_30min_R1 4 SQSIEQESQEK 11 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 SQS(1)IEQESQEK;SQS(1)IEQESQEK;S(0.031)QS(0.968)IEQESQEK;SQS(0.997)IEQES(0.003)QEK ;;; 331.31 3.15E-67 4899260000 3825460 3819330 2100970 1632020 3802370 4530090 5243800 5067560 2931270 5156720 TRUE FALSE FALSE 3557315.009 3516672.381 2914521.85 3799425.038 3325441.299 3971213.554 3931745.777 3913787.212 3185354.844 3865443.747 0.920286322 0.909771972 0.753994118 0.982920794 0.860300011 1.027362915 1.017152501 1.012506576 0.824059294 1 21.88220261 -6.252720489 24.91625184 0.979556434 0.884917028 0.259504111 0.076552099 860.3900722 2458765.848 0.025350181 0.024967277 5.59E-07 6.252720489 -0.094639406 SQS(ph)KSPTGTPAR ddPTM_HeLa_A486_30min_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 S(0.248)QS(0.651)KS(0.096)PT(0.003)GT(0.003)PAR 55.841 0.019092 104920000 73080 75086 53316 35598 90723 68554 92085 81706 59578 88866 TRUE FALSE FALSE 67957.46939 69135.9119 73961.38305 82873.94302 79343.67538 60096.50449 69044.35902 63103.32743 64742.26901 66613.37518 1.020177542 1.037868322 1.110308295 1.244103647 1.191107269 0.902168736 1.03649393 0.947307163 0.971910954 1 16.02352426 -6.261103209 24.99975867 0.972340215 1.122387528 0.538155667 0.069068916 27.55159337 2048962.598 0.026082625 0.024574253 5.48E-07 6.261103209 0.150047313 SQS(ph)LNIR ddPTM_HeLa_A485_30min_R1 3 SQSLNIR 7 0 A0A0C4DGF9;O00443-2;O00443 A0A0C4DGF9 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 0 S(0.004)QS(0.996)LNIR;SQS(1)LNIR;SQS(1)LNIR ;; 158.57 0.00037236 3249630000 1250050 1473000 1448890 1310880 1998840 1568530 2053890 2160160 1538400 1867120 TRUE FALSE FALSE 1528119.31 1645254.537 1984894.704 1382490.055 1799828.471 1650655.805 1615059.623 1630377.373 1847142.769 1401681.346 1.090204499 1.173772157 1.416081273 0.986308378 1.284049671 1.177625578 1.152230232 1.163158358 1.317805059 1 20.41872698 -10.36572806 3.156778185 0.998061129 1.195203861 0.209533334 0.11402439 37142845.39 47439916.72 658627.2461 0.027757886 4.31E-11 10.36572806 0.197142732 SQS(ph)LNIR ddPTM_HeLa_A486_30min_R1 4 SQSLNIR 7 0 A0A0C4DGF9;O00443-2;O00443 A0A0C4DGF9 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 0 SQS(1)LNIR;SQS(1)LNIR;SQS(1)LNIR;SQS(1)LNIR ;;; 173.39 0.00045278 3852630000 1858260 1899770 1479260 708320 2156320 1903080 2237760 2303240 1579070 1925020 TRUE FALSE FALSE 1728005.57 1749225.306 2052069.088 1649004.757 1885854.239 1668297.339 1677848.779 1778842.531 1715945.059 1442982.462 1.197523612 1.212229083 1.422102584 1.142775328 1.306914178 1.156145263 1.162764499 1.232754089 1.189165568 1 20.46062233 -13.96589428 0.173864147 0.090413065 1.278835034 0.457673399 0.076758446 117.1296356 1.125696419 36.5772832 0.258603835 1.08E-14 13.96589428 1.188421968 SQS(ph)LPHSATVTLGGTSDPSTLSSSALSER ddPTM_HeLa_A485_30min_R1 2 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 0 S(0.249)QS(0.749)LPHS(0.002)ATVTLGGTSDPSTLSSSALSER;S(0.265)QS(0.735)LPHSATVTLGGTSDPSTLSSSALSER ; 257.75 2.55E-63 974490000 96618 148452 177819 108241 158990 163787 195013 207820 142393 171536 TRUE FALSE FALSE 118110.3408 165812.17 243601.6478 114153.9317 143160.3974 172362.6341 153346.8794 156851.8192 170969.969 128775.2321 0.917182123 1.287609173 1.891680906 0.886458754 1.111707547 1.338476594 1.190810352 1.218027851 1.327661898 1 16.97449561 SQS(ph)LPHSATVTLGGTSDPSTLSSSALSER ddPTM_HeLa_A486_30min_R1 2 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 0 S(0.221)QS(0.778)LPHS(0.001)ATVTLGGTSDPSTLSSSALSER;S(0.25)QS(0.749)LPHSAT(0.001)VTLGGTSDPSTLSSSALSER ; 255.04 3.07E-63 796920000 181242 181727 149212 40942 224850 198281 199339 231980 165024 212710 TRUE FALSE FALSE 168537.8717 167326.2907 206990.8824 95315.04509 196647.2164 173819.1062 149462.2738 179163.2181 179328.4132 159446.0315 1.057021427 1.049422736 1.298187735 0.597788758 1.233315213 1.090143822 0.937384721 1.123660567 1.124696623 1 17.28270866 SQS(ph)LPNSLDYTQTSDPGR ddPTM_HeLa_A485_30min_R1 6 SQSLPNSLDYTQTSDPGR 18 0 H0YLG5;Q96TC7;H0YNE5 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 S(0.021)QS(0.939)LPNS(0.04)LDYTQTSDPGR;S(0.004)QS(0.996)LPNSLDYTQTSDPGR;S(0.043)QS(0.957)LPNSLDYTQTSDPGR;S(0.002)QS(0.998)LPNSLDYTQTSDPGR;S(0.002)QS(0.998)LPNSLDYTQTSDPGR;S(0.159)QS(0.841)LPNSLDYTQTSDPGR ;;;;; 283.83 1.85E-69 6156180000 536198 849286 730913 773054 881939 889720 1169079 1287496 804321 1372774 TRUE FALSE FALSE 655473.3952 948602.6099 1001308.135 815283.9825 794130.0565 936304.3634 919295.7212 971735.5873 965740.847 1030566.706 0.636031992 0.920466967 0.971609241 0.791102583 0.770576084 0.908533488 0.892029323 0.942913818 0.937096882 1 19.97500646 -7.25747831 0.663313074 0.996565414 0.827243475 0.32900467 0.086657351 0.966837449 0.848607487 0.084450231 0.043605992 5.53E-08 7.25747831 -0.169321939 SQS(ph)LPNSLDYTQTSDPGR ddPTM_HeLa_A486_30min_R1 6 SQSLPNSLDYTQTSDPGR 18 0 H0YLG5;Q96TC7;H0YNE5 H0YLG5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 S(0.022)QS(0.978)LPNSLDYTQTSDPGR;S(0.011)QS(0.989)LPNSLDYTQTSDPGR;S(0.003)QS(0.996)LPNS(0.001)LDYTQTSDPGR;S(0.001)QS(0.999)LPNSLDYTQTSDPGR;S(0.006)QS(0.994)LPNSLDYTQTSDPGR;S(0.001)QS(0.999)LPNSLDYTQTSDPGR ;;;;; 323.47 7.71E-90 5803090000 949212 1043324 907960 279876 1256920 1055527 1134123 1158470 1170710 1296910 TRUE FALSE FALSE 882677.1405 960647.2065 1259546.428 651565.4721 1099265.373 925306.8106 850353.4299 894711.6702 1272188.085 972155.2945 0.907958991 0.988162295 1.295622659 0.670227767 1.130750796 0.95180967 0.874709457 0.920338217 1.308626402 1 19.89082727 -7.739176538 24.99953572 1.154313457 0.971000722 0.16343333 0.168957051 360.6613845 404998.7622 0.109390096 0.041274951 1.82E-08 7.739176538 -0.183312736 SQS(ph)LPTTLLS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 2 0 S(0.031)QS(0.969)LPTTLLS(1)PVR;S(0.008)QS(0.987)LPT(0.005)T(0.005)LLS(0.995)PVR;S(0.001)QS(0.998)LPT(0.025)T(0.019)LLS(0.957)PVR ;; 162.47 1.82E-11 683920000 1054690 1151280 862760 387357 1205470 1084170 1206420 1230630 925600 1193330 TRUE FALSE FALSE 980761.6774 1060048.38 1196843.778 901786.6719 1054268.712 950416.1284 904560.9558 950442.4135 1005831.753 894512.4007 1.096420437 1.185057221 1.337984556 1.008132108 1.178595972 1.062496314 1.011233556 1.062525699 1.124446964 1 19.77074196 -5.282384851 24.90848287 1.069047641 1.204344418 0.427678563 0.075402529 744.0525881 884830.1287 0.021326735 0.03166662 5.22E-06 5.282384851 0.135296777 SQS(ph)LPTTLLSPVR ddPTM_HeLa_A485_30min_R1 5 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SQS(0.985)LPT(0.004)T(0.011)LLSPVR;SQS(0.925)LPT(0.018)T(0.056)LLSPVR;SQS(0.996)LPT(0.002)T(0.002)LLSPVR;SQS(1)LPTTLLSPVR;SQS(1)LPTTLLSPVR ;;;; 241.98 5.28E-35 4686520000 1796000 2291890 2234170 2004540 2711030 2215060 3184640 3281020 2393920 3299810 TRUE FALSE FALSE 2195514.004 2559906.599 3060682.455 2114042.944 2441110.334 2331037.116 2504215.648 2476344.701 2874357.786 2477228.096 0.886278501 1.03337541 1.235527104 0.853390509 0.985420091 0.940986065 1.010894254 0.999643394 1.160312121 1 21.24029528 -7.603783415 17.10209073 1.080152639 0.996316131 0.100780362 0.1036214 6.250687438 1314.997338 0.070110504 0.026497302 2.49E-08 7.603783415 -0.083836509 SQS(ph)LPTTLLSPVR ddPTM_HeLa_A486_30min_R1 6 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SQS(0.977)LPT(0.011)T(0.011)LLSPVR;SQS(1)LPTTLLSPVR;SQS(0.965)LPT(0.01)T(0.025)LLSPVR;SQS(0.986)LPT(0.004)T(0.01)LLSPVR;S(0.012)QS(0.794)LPT(0.097)T(0.097)LLSPVR;SQS(1)LPTTLLSPVR ;;;;; 216.83 3.03E-27 5257930000 2142250 2299270 1621560 1041841 2512240 2494040 2946690 2981790 2211840 3165140 TRUE FALSE FALSE 1992089.338 2117067.471 2249471.459 2425458.5 2197131.433 2186350.702 2209396.995 2302901.509 2403564.072 2372568.342 0.839634122 0.892310427 0.948116612 1.022292364 0.92605612 0.921512212 0.93122586 0.970636533 1.013064209 1 21.17801821 -4.601808908 2.450253823 0.963982686 0.842392927 0.603168306 0.034072542 0.234809619 2.583975163 0.00975567 0.043940818 2.50E-05 4.601808908 -0.121589759 SQS(ph)LQDQPTR ddPTM_HeLa_A485_30min_R1 1 SQSLQDQPTR 10 0 Q8N4C8 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 S(0.002)QS(0.998)LQDQPTR 106.39 0.00092228 348750000 350910 415180 346790 309210 460220 409900 437830 468800 359610 495980 TRUE FALSE FALSE 428968.7189 463731.6894 475082.0521 326101.3593 414398.8809 431361.7302 344284.0438 353826.065 431780.4285 372341.3138 1.152084668 1.245447852 1.27593161 0.87581299 1.112954339 1.158511597 0.924646369 0.95027345 1.159636098 1 18.50626618 -5.241207162 24.99203188 1.028828754 1.22658404 0.477114694 0.095192619 727.726301 898929.2411 0.026103914 0.045140043 5.74E-06 5.241207162 0.197755286 SQS(ph)LQDQPTR ddPTM_HeLa_A486_30min_R1 2 SQSLQDQPTR 10 0 Q8N4C8 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 S(0.011)QS(0.989)LQDQPTR;SQS(1)LQDQPTR ; 156.52 1.81E-06 489680000 1241940 1310680 1057620 471080 1550910 1233430 1326720 1416910 1235750 1474520 TRUE FALSE FALSE 1154886.419 1206816.943 1467158.788 1096698.047 1356380.406 1081261.947 994760.6234 1094310.524 1342865.805 1105290.594 1.044871299 1.091854893 1.327396429 0.992225983 1.227170857 0.978260335 0.899999175 0.990065897 1.214943664 1 20.07599429 -6.279304872 24.66681118 1.008742012 1.136779766 0.213513905 0.114701769 1084.297689 1497080.241 0.040430301 0.035727486 5.26E-07 6.279304872 0.128037754 SQS(ph)MDIDGVSCEK ddPTM_HeLa_A485_30min_R1 4 SQSMDIDGVSCEK 13 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SQS(1)MDIDGVSCEK;SQS(1)MDIDGVSCEK;S(0.012)QS(0.988)MDIDGVSCEK;S(0.004)QS(0.996)MDIDGVSCEK ;;; 314.72 1.98E-68 1228660000 1560530 1290100 1261400 2312850 2529190 1738600 2876410 3288700 2533130 4555790 TRUE FALSE FALSE 1907664.515 1440965.973 1728044.351 2439195.139 2277374.963 1829630.408 2261841.505 2482141.169 3041505.956 3420115.396 0.557777821 0.421320864 0.505259078 0.713190889 0.665876644 0.534961601 0.661334851 0.725747784 0.88929922 1 21.70561357 -7.626954701 0.34976045 1.047174356 0.480112805 0.785963582 0.077663569 0.643329686 0.250921274 0.136142665 0.102376514 2.36E-08 7.626954701 -0.567061551 SQS(ph)MDIDGVSCEK ddPTM_HeLa_A486_30min_R1 4 SQSMDIDGVSCEK 13 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 S(0.001)QS(0.999)MDIDGVSCEK;SQS(1)MDIDGVSCEK;SQS(1)MDIDGVSCEK;SQS(1)MDIDGVSCEK ;;; 314.72 1.98E-68 1458930000 1930580 2572980 1223010 1103350 2367330 3528640 4511950 5060200 2366640 3649100 TRUE FALSE FALSE 1795256.312 2369087.694 1696592.225 2568654.56 2070397.397 3093312.273 3383012.387 3908102.923 2571782.261 2735341.608 0.656318869 0.866103044 0.620248754 0.939061707 0.756906337 1.130868724 1.236778754 1.428744005 0.940205148 1 21.38328959 -6.306529201 4.213653506 1.186443496 0.772656435 0.605196029 0.152052907 0.141024665 5.508602553 0.052725974 0.047355688 4.94E-07 6.306529201 -0.41378706 SQS(ph)NPILGSPFFSHFDGQDSYAAAVR ddPTM_HeLa_A485_30min_R1 2 SQSNPILGSPFFSHFDGQDSYAAAVR 26 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 S(0.071)QS(0.928)NPILGSPFFSHFDGQDSYAAAVR;S(0.129)QS(0.871)NPILGSPFFSHFDGQDSYAAAVR ; 161.55 9.45E-14 328540000 29320 45506 40401 27773.3 52423 35225 49287 51212 40034 43663 TRUE FALSE FALSE 35842.13285 50827.53085 55347.01113 29290.48505 47203.58205 37069.32653 38756.42981 38652.1767 48068.45659 32778.61766 1.09346078 1.5506307 1.688509616 0.893585122 1.440072383 1.130899628 1.182369257 1.179188735 1.46645771 1 15.00046739 -5.251153797 24.99355419 1.200427015 1.454843366 0.231576416 0.215060216 1050.358106 2552322.97 0.056565934 0.096617587 5.61E-06 5.251153797 0.25441635 SQS(ph)NPILGSPFFSHFDGQDSYAAAVR ddPTM_HeLa_A486_30min_R1 3 SQSNPILGSPFFSHFDGQDSYAAAVR 26 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 S(0.038)QS(0.962)NPILGSPFFSHFDGQDSYAAAVR;S(0.147)QS(0.831)NPILGS(0.022)PFFSHFDGQDSYAAAVR;S(0.164)QS(0.836)NPILGSPFFSHFDGQDSYAAAVR ;; 210.9 6.78E-29 511310000 93546 98624 66099 102518.2 111372 106019 115377 126873 81865 158219 TRUE FALSE FALSE 86988.90847 90808.67506 91694.30299 238667.5506 97402.68526 92939.4537 86508.45427 97986.78752 88961.12411 118599.9326 0.733465075 0.765672232 0.773139588 2.012375095 0.821271 0.783638335 0.729414026 0.82619598 0.750094222 1 16.85574366 -5.955552013 24.99999964 0.801579092 1.076650111 0.109863935 0.350762071 307.7094432 173071.3331 0.114439381 0.129761989 1.11E-06 5.955552013 0.275071018 SQS(ph)PAASDCSSSSSSASLPSSGR ddPTM_HeLa_A485_30min_R1 8 SQSPAASDCSSSSSSASLPSSGR 23 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 SQS(1)PAASDCSSSSSSASLPSSGR;S(0.003)QS(0.997)PAASDCSSSSSSASLPSSGR;S(0.001)QS(0.999)PAASDCSSSSSSASLPSSGR;S(0.087)QS(0.913)PAASDCSSSSSSASLPSSGR;S(0.003)QS(0.844)PAAS(0.152)DCSSSSSSASLPSSGR;S(0.003)QS(0.997)PAASDCSSSSSSASLPSSGR;S(0.228)QS(0.772)PAASDCSSSSSSASLPSSGR;S(0.31)QS(0.69)PAASDCSSSSSSASLPSSGR ;;;;;;; 399.15 1.92E-172 24645160000 782714 943219 962879 828285 1287969 950848 1181628 1232723 967877 1157786 TRUE FALSE FALSE 956826.029 1053520.257 1319088.011 873532.1122 1159734.284 1000632.931 929163.5248 930395.7514 1162121.036 869171.2577 1.100848677 1.212097441 1.517638784 1.005017256 1.334298936 1.151249448 1.069022378 1.070440081 1.337044945 1 19.72928094 -6.502024203 22.89947591 1.12287385 1.236500286 0.116812769 0.150930847 593.2347333 651407.8258 0.052461153 0.045661497 3.15E-07 6.502024203 0.113626435 SQS(ph)PAASDCSSSSSSASLPSSGR ddPTM_HeLa_A486_30min_R1 6 SQSPAASDCSSSSSSASLPSSGR 23 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.001)QS(0.999)PAASDCSSSSSSASLPSSGR;S(0.004)QS(0.996)PAASDCSSSSSSASLPSSGR;S(0.028)QS(0.972)PAASDCSSSSSSASLPSSGR;S(0.002)QS(0.998)PAASDCSSSSSSASLPSSGR;S(0.011)QS(0.896)PAAS(0.093)DCSSSSSSASLPSSGR;S(0.008)QS(0.992)PAASDCSSSSSSASLPSSGR ;;;;; 384.46 2.30E-171 24345600000 1430252 1762804 1373542 515068 1857650 1600144 1760454 1845540 1341462 1576747 TRUE FALSE FALSE 1329998.721 1623112.991 1905414.247 1199104.334 1624646.215 1402734.502 1319969.789 1425350.83 1457741.006 1181919.288 1.125287263 1.373285813 1.612135673 1.014539949 1.374583046 1.186827659 1.11680197 1.205962915 1.233367643 1 20.17270009 -6.089118222 0.945812027 1.1475817 1.334950654 0.174617838 0.160651417 1.028578814 1.991302036 0.088694911 0.097167365 8.14E-07 6.089118222 0.187368955 SQS(ph)PFRR ddPTM_HeLa_A486_30min_R1 1 SQSPFRR 7 1 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 0 S(0.035)QS(0.965)PFRR 46.819 0.036982 118610000 47784 43607 47585 18527 65574 51358 56096 59705 41777 57706 TRUE FALSE FALSE 44434.58836 40151.42251 66011.18637 43131.7923 57349.09747 45021.97213 42060.18748 46111.47485 45398.264 43256.042 1.027245821 0.928226917 1.526057016 0.997127576 1.325805479 1.040825051 0.972354047 1.066012347 1.049524226 1 15.40061404 -6.487533221 24.57754058 1.024490167 1.161571547 0.147678574 0.162796228 990.2890655 688599.0829 0.056717004 0.049995046 3.25E-07 6.487533221 0.13708138 SQS(ph)PHYFR ddPTM_HeLa_A485_30min_R1 4 SQSPHYFR 8 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 SQS(1)PHYFR;SQS(1)PHYFR;SQS(1)PHYFR;SQS(1)PHYFR ;;; 129.82 0.00040617 8715100000 2928950 4200750 4268470 2611130 4881240 3836550 4640100 5105940 3681670 3906470 TRUE FALSE FALSE 3580484.823 4691991.171 5847554.679 2753769.42 4395246.607 4037425.826 3648704.729 3853700.209 4420547.399 2932658.922 1.220900527 1.599910285 1.993942983 0.939000918 1.498724101 1.376711692 1.244162661 1.314063555 1.507351354 1 21.48377786 -12.95838095 0.130605234 3.98E-10 1.595734904 0.180186118 0.262653779 181.7783281 1.941988802 50.97231783 2.114932025 1.10E-13 12.95838095 1.595734903 SQS(ph)PHYFR ddPTM_HeLa_A486_30min_R1 4 SQSPHYFR 8 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 S(0.002)QS(0.998)PHYFR;S(0.001)QS(0.999)PHYFR;SQS(1)PHYFR;S(0.003)QS(0.997)PHYFR ;;; 139.32 0.00031871 6332680000 3686750 3684930 3030950 564327 4376910 3335820 3738230 3839290 3168510 3105660 TRUE FALSE FALSE 3428327.863 3392922.727 4204615.012 1313781.776 3827917.135 2924280.445 2802885.315 2965167.478 3443158.998 2327982.522 1.472660482 1.457451976 1.806119665 0.564343488 1.644306647 1.256143643 1.203997577 1.273706933 1.479031293 1 21.1506488 -1 0.030756833 1.01E-12 3.247847338 0.107770872 0.313550649 3212.066344 7.588710509 252.6592343 625.9567739 0.1 1 3.247847338 SQS(ph)PINCIRPSVLGPLK ddPTM_HeLa_A486_30min_R1 1 SQSPINCIRPSVLGPLK 17 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 SQS(1)PINCIRPSVLGPLK 173.55 1.15E-12 1154300000 837400 865950 585580 324350 854000 971110 979040 968760 782310 982480 TRUE FALSE FALSE 778702.5843 797328.9683 812332.2584 755103.1917 746883.3568 851304.3217 734073.8368 748194.4959 850121.2607 736460.6131 1.057358086 1.082649844 1.103022 1.025313748 1.014152479 1.155940055 0.996759126 1.015932804 1.154333641 1 19.49024884 -10.70264114 2.651170429 0.989421904 1.065004571 0.120861334 0.054121041 28812912.77 23842274.41 2033689.196 0.01364781 1.98E-11 10.70264114 0.075582666 SQS(ph)PINCIRPSVLGPLKR ddPTM_HeLa_A485_30min_R1 1 SQSPINCIRPSVLGPLKR 18 2 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 S(0.036)QS(0.964)PINCIRPSVLGPLKR 90.475 0.00033381 966840000 497080 558640 450210 557650 762530 617060 845700 1060200 524650 911750 TRUE FALSE FALSE 607653.7311 623968.0885 616761.4138 588113.0075 686609.8358 649368.3074 665009.2863 800184.2877 629942.4426 684467.5045 0.887775865 0.911610974 0.901082096 0.859227069 1.003129924 0.948720433 0.971571743 1.169061033 0.920339444 1 19.38462252 -6.237170466 1.12714707 1.028756788 0.892879162 0.383469221 0.065745516 0.470921041 1.243710492 0.033311653 0.03073083 5.79E-07 6.237170466 -0.135877625 SQS(ph)PVHLR ddPTM_HeLa_A485_30min_R1 8 SQSPVHLR 8 0 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.055)QS(0.945)PVHLR;S(0.01)QS(0.99)PVHLR;S(0.005)QS(0.995)PVHLR;S(0.002)QS(0.998)PVHLR;S(0.163)QS(0.837)PVHLR;S(0.244)QS(0.756)PVHLR;S(0.058)QS(0.942)PVHLR;S(0.345)QS(0.655)PVHLR ;;;;;;; 137.62 0.00033439 7322167000 1442815 2255396 2179820 1545128 2520979 2043288 2348657 2596884 2038913 2064118 TRUE FALSE FALSE 1763764.219 2519144.943 2986226.128 1629534.43 2269981.479 2150271.4 1846847.245 1959994.127 2448104.137 1549571.37 1.13822716 1.625704367 1.927130422 1.051603341 1.46490928 1.387655607 1.191843939 1.26486212 1.579858911 1 20.56343777 -5.276554798 24.99985395 1.297144623 1.569889071 0.221901402 0.243731262 1233.319889 2039822.603 0.067859935 0.101079657 5.29E-06 5.276554798 0.272744448 SQS(ph)PVHLR ddPTM_HeLa_A486_30min_R1 6 SQSPVHLR 8 0 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.01)QS(0.99)PVHLR;S(0.003)QS(0.997)PVHLR;S(0.025)QS(0.975)PVHLR;S(0.011)QS(0.989)PVHLR;S(0.006)QS(0.994)PVHLR;S(0.058)QS(0.942)PVHLR ;;;;; 111.33 0.00085259 6125900000 1960854 2141850 1964810 614745 2586420 1858873 2032783 2241842 1794645 2040206 TRUE FALSE FALSE 1823408.26 1972122.006 2725637.051 1431157.427 2262007.086 1629544.149 1524159.193 1731423.516 1950206.274 1529325.138 1.19229601 1.289537428 1.78224825 0.935809784 1.47908841 1.065531526 0.996622075 1.132148732 1.2752071 1 20.54446373 -6.279781066 24.16992673 1.096081166 1.33580751 0.242842524 0.213545636 820.925562 1081778.199 0.074076778 0.065465022 5.25E-07 6.279781066 0.239726345 SQS(ph)RS(ph)NS(ph)PLPVPPSK ddPTM_HeLa_A485_30min_R1 1 SQSRSNSPLPVPPSK 15 1 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 3 0 S(0.66)QS(0.744)RS(0.851)NS(0.744)PLPVPPSK 65.097 0.032223 194010000 206950 217030 165290 352560 348450 305370 478300 518310 253470 499230 TRUE FALSE FALSE 252985.3135 242409.7706 226437.6493 371819.4601 313757.0945 321358.701 376107.2976 391193.6598 304339.104 374781.1486 0.675021448 0.646803532 0.604186337 0.992097552 0.837174163 0.857456951 1.003538462 1.043792254 0.812044856 1 18.51568886 -5.25888437 24.998496 0.932511443 0.642483733 0.758924208 0.075704761 110.2563036 1078754.452 0.021331129 0.034885893 5.51E-06 5.25888437 -0.290027709 SQS(ph)RS(ph)NS(ph)PLPVPPSK ddPTM_HeLa_A486_30min_R1 1 SQSRSNSPLPVPPSK 15 1 Q13247;Q13247-3 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 3 0 S(0.652)QS(0.721)RS(0.852)NS(0.775)PLPVPPSK 77.023 0.011841 292220000 267030 235210 146440 148210 277350 299110 403340 383570 202220 398530 TRUE FALSE FALSE 248312.5759 216571.103 203145.4898 345040.3701 242562.1768 262208.8493 302420.0659 296239.4843 219748.5924 298735.494 0.831212162 0.724959395 0.680017922 1.155002927 0.81196303 0.877729144 1.012333894 0.99164475 0.735595859 1 18.18850913 -5.221780578 24.99952126 0.935270127 0.74335275 0.376737461 0.114910298 565.8689671 356703.3444 0.030384778 0.052626902 6.00E-06 5.221780578 -0.191917377 SQS(ph)S(ph)DTEQQSPTSGGGK ddPTM_HeLa_A485_30min_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.04)QS(0.96)S(0.901)DT(0.099)EQQSPTSGGGK 228.26 3.49E-34 418180000 601610 558260 368350 857590 744290 677340 1036300 987620 591980 1116500 TRUE FALSE FALSE 735436.069 623543.6508 504617.9933 904437.9702 670185.8742 712804.475 814886.0392 745404.6465 710784.956 838177.0977 0.877423245 0.743928285 0.602042211 1.079053547 0.799575503 0.850422276 0.972212247 0.889316409 0.848012858 1 19.67689558 -5.255124387 24.99906206 0.90947104 0.741410964 0.402105501 0.099280733 542.1098979 2146035.782 0.026780546 0.044949603 5.56E-06 5.255124387 -0.168060075 SQS(ph)S(ph)SQFR ddPTM_HeLa_A485_30min_R1 2 SQSSSQFR 8 0 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 2 0 S(0.03)QS(0.96)S(0.919)S(0.091)QFR;S(0.032)QS(0.968)S(0.975)S(0.024)QFR ; 83.775 0.013103 1619840000 1392300 1775280 1601210 1427560 2240750 1775400 2231820 2315200 1708260 2089100 TRUE FALSE FALSE 1702012.332 1982883.553 2193564.211 1505543.988 2017653.062 1868357.199 1754973.425 1747393.57 2051092.113 1568325.817 1.085241544 1.264331385 1.398666136 0.959968886 1.286501211 1.191306793 1.119010735 1.114177648 1.307822705 1 20.58079388 -11.27770724 2.266841315 0.18347603 1.191618939 0.184059354 0.121205903 3534352.639 1099054.034 14536416.12 0.030096337 5.28E-12 11.27770724 1.008142909 SQS(ph)S(ph)SQFR ddPTM_HeLa_A486_30min_R1 2 SQSSSQFR 8 0 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 2 0 S(0.162)QS(0.844)S(0.967)S(0.027)QFR;S(0.04)QS(0.874)S(0.648)S(0.438)QFR ; 77.062 0.023772 2109200000 2817100 3298500 2683500 1186930 3805300 3188300 3663700 3752400 3053300 3719700 TRUE FALSE FALSE 2619635.838 3037114.847 3722623.067 2763233.024 3328003.791 2794959.962 2747003.509 2898060.434 3317962.502 2788262.909 0.939522535 1.089249811 1.335104755 0.991023126 1.193576036 1.002401873 0.985202472 1.039378469 1.189974766 1 21.41093517 -6.282908607 24.63553466 1.042215859 1.114489264 0.07722082 0.113964379 1864.086288 2138996.77 0.040487196 0.035737759 5.21E-07 6.282908607 0.072273405 SQS(ph)SDTEQQS(ph)PTSGGGK ddPTM_HeLa_A486_30min_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.001)QS(0.979)S(0.02)DTEQQS(0.89)PT(0.103)S(0.007)GGGK 264.83 1.72E-51 449000000 654240 713140 385980 297590 663490 893130 1068500 1109900 592960 1106100 TRUE FALSE FALSE 608381.1545 656628.1892 535441.7929 692804.5594 580268.8974 782944.7013 801149.9986 857199.9989 644358.2502 829125.3605 0.733762569 0.791952846 0.645791117 0.835584813 0.69985665 0.944301958 0.966259189 1.033860547 0.777154193 1 19.66123072 -6.269983738 24.29118141 0.947802982 0.744120708 0.623923494 0.078735784 277.5061656 788933.2004 0.026150324 0.023441264 5.37E-07 6.269983738 -0.203682274 SQS(ph)SDTEQQSPTSGGGK ddPTM_HeLa_A485_30min_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.06)QS(0.469)S(0.469)DT(0.001)EQQSPTSGGGK 94.544 0.00070103 32154000 24889 27544 21200 34690 32971 31444 44301 44956 24912 40863 TRUE FALSE FALSE 30425.47218 30765.0312 29042.76221 36585.02686 29688.29147 33090.35922 34835.72944 33930.47051 29911.60989 30676.60613 0.991813503 1.002882492 0.946739743 1.192603468 0.96778279 1.078683837 1.135579643 1.106069895 0.975062553 1 14.90485126 -5.163500097 23.86460162 1.069060705 0.98271863 0.241710935 0.068408095 43.88539176 10686.48879 0.01796809 0.03112165 6.86E-06 5.163500097 -0.086342075 SQS(ph)SSQFR ddPTM_HeLa_A485_30min_R1 6 SQSSSQFR 8 0 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 1 0 S(0.007)QS(0.761)S(0.131)S(0.101)QFR;S(0.002)QS(0.632)S(0.313)S(0.054)QFR;SQS(0.867)S(0.128)S(0.005)QFR;SQS(0.78)S(0.2)S(0.019)QFR;S(0.14)QS(0.673)S(0.048)S(0.139)QFR;S(0.004)QS(0.912)S(0.03)S(0.053)QFR ;;;;; 130.98 0.00054137 5202020000 3900831 5896410 5537617 4377117 6587250 5171468 5947230 6537410 5133725 6000090 TRUE FALSE FALSE 4768557.398 6585943.858 7586211.968 4616227.818 5931400.261 5442238.068 4676555.726 4934099.947 6164016.518 4504377.986 1.058649477 1.462120603 1.684186361 1.02483136 1.316807843 1.208210786 1.038224532 1.095400955 1.368450103 1 22.10289647 -5.28406055 24.99749378 1.158934207 1.407699078 0.283153919 0.182850419 1004.58618 1110114.36 0.051549136 0.076516481 5.20E-06 5.28406055 0.248764871 SQS(ph)SSQFR ddPTM_HeLa_A486_30min_R1 3 SQSSSQFR 8 0 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 1 0 S(0.001)QS(0.79)S(0.193)S(0.017)QFR;S(0.003)QS(0.597)S(0.2)S(0.2)QFR;S(0.043)QS(0.668)S(0.144)S(0.144)QFR ;; 94.465 0.002756 905201000 1292416 1462310 1240743 459817 1706970 1327200 1472729 1527950 1223222 1524998 TRUE FALSE FALSE 1201824.312 1346431.23 1721191.918 1070477.214 1492865.906 1163463.558 1104236.627 1180069.14 1329251.868 1143128.575 1.051346576 1.177847584 1.505685324 0.936445154 1.305947501 1.017788885 0.965977626 1.03231532 1.162819211 1 20.12455625 -6.284745283 23.98425426 1.033437224 1.19732192 0.225084329 0.148083399 736.8636394 758307.7472 0.051524934 0.045475097 5.19E-07 6.284745283 0.163884696 SQS(ph)TTFNPDDMSEPEFK ddPTM_HeLa_A485_30min_R1 1 SQSTTFNPDDMSEPEFK 17 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.185)QS(0.794)T(0.02)T(0.001)FNPDDMSEPEFK 231.86 6.14E-35 196640000 219800 150330 154160 290950 195230 164350 239540 215160 170840 346860 TRUE FALSE FALSE 268693.7517 167909.7858 211190.1991 306843.8618 175792.2157 172955.1119 188360.3221 162391.6726 205126.021 260394.1855 1.031873086 0.644829244 0.81104038 1.178382156 0.675100388 0.664204969 0.723366084 0.62363786 0.787751925 1 17.99033771 SQS(ph)TTFNPDDMSEPEFK ddPTM_HeLa_A486_30min_R1 2 SQSTTFNPDDMSEPEFK 17 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.158)QS(0.674)T(0.158)T(0.009)FNPDDMSEPEFK;S(0.027)QS(0.945)T(0.027)T(0.001)FNPDDMSEPEFK ; 232.84 1.47E-33 181690000 295910 304130 141524 141973 225182 346850 379040 388190 234117 354700 TRUE FALSE FALSE 275168.2371 280029.6312 196325.8829 330520.3189 196937.5738 304059.1735 284200.1829 299807.6111 254410.4501 265880.8113 1.034930786 1.053214897 0.738398089 1.243114602 0.74069871 1.143592018 1.068900691 1.127601536 0.956859011 1 18.02042014 SQS(ph)TTFNPDDMSEPEFKR ddPTM_HeLa_A485_30min_R1 1 SQSTTFNPDDMSEPEFKR 18 1 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.427)QS(0.502)T(0.053)T(0.018)FNPDDMSEPEFKR 41.911 0.0096625 0 97338 78946 81688 105730 104140 94225 118340 135440 78361 124320 TRUE FALSE FALSE 118990.5023 88178.04796 111907.7905 111505.7622 93771.45594 99158.4753 93055.69225 102223.1276 94087.33393 93329.31194 1.274953172 0.944805508 1.199063705 1.194756072 1.004737461 1.062458013 0.997068234 1.095294988 1.008122014 1 16.51004264 -5.769510636 24.99770134 1.03289316 1.141757473 0.34256393 0.08435867 232.5346695 720187.4579 0.025133732 0.028992745 1.70E-06 5.769510636 0.108864313 SQS(ph)WDDRGER ddPTM_HeLa_A485_30min_R1 1 SQSWDDRGER 10 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.17)QS(0.83)WDDRGER 77.776 0.0043966 344970000 192800 302480 389900 251110 473970 313900 380150 402210 311360 287580 TRUE FALSE FALSE 235687.6948 337852.4048 534140.2351 264827.5035 426779.8826 330335.3186 298927.847 303567.3669 373847.096 215891.5985 1.091694612 1.564916871 2.474113114 1.226668871 1.976824877 1.530098072 1.384620101 1.406110145 1.731642633 1 17.71994758 -6.515549102 21.95588557 1.420567367 1.688763849 0.100006523 0.395001277 179.6502345 538156.5739 0.145044539 0.117557738 3.05E-07 6.515549102 0.268196482 SQS(ph)WEER ddPTM_HeLa_A485_30min_R1 5 SQSWEER 7 0 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 SQS(1)WEER;SQS(1)WEER;S(0.002)QS(0.998)WEER;S(0.003)QS(0.997)WEER;S(0.013)QS(0.987)WEER ;;;; 150.06 0.00093233 4780240000 4379220 4924220 4743810 4433330 6457020 4779360 5913670 6094230 4971400 5781020 TRUE FALSE FALSE 5353362.381 5500064.694 6498742.725 4675511.592 5814136.417 5029599.899 4650166.094 4599610.537 5969114.38 4339918.106 1.233516912 1.267319926 1.497434414 1.077327147 1.339688048 1.158915854 1.071487061 1.059838095 1.37539793 1 22.04923639 -6.387586987 5.446631092 1.129698265 1.282195902 0.240083185 0.13410015 0.35422512 14.26915002 0.046942646 0.041121706 4.10E-07 6.387586987 0.152497638 SQS(ph)WEER ddPTM_HeLa_A486_30min_R1 3 SQSWEER 7 0 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 SQS(1)WEER;SQS(1)WEER;SQS(1)WEER ;; 160.18 0.00028857 4706680000 998710 1082820 852310 360615 1188830 1133170 1222610 1281820 1047680 1260120 TRUE FALSE FALSE 928705.5863 997013.3996 1182347.258 839529.9445 1039715.856 993371.0066 916700.0466 989977.5679 1138493.746 944577.75 0.983196551 1.055512264 1.25172042 0.888788609 1.100720249 1.051656157 0.970486597 1.048063611 1.205293843 1 19.84931003 -10.19326641 4.067347382 0.999968707 1.059801847 0.031912385 0.101483312 67272538.05 0.981617895 19715.74173 0.023851741 6.41E-11 10.19326641 0.05983314 SQS(ph)WEERGDR ddPTM_HeLa_A485_30min_R1 1 SQSWEERGDR 10 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 S(0.013)QS(0.987)WEERGDR 96.27 0.0011067 1894700000 1056900 1875900 1949700 914270 2640200 1433500 1826700 2294400 1528100 1081900 TRUE FALSE FALSE 1292003.759 2095270.187 2670975.164 964214.255 2377332.418 1508555.843 1436410.622 1731694.803 1834775.653 812202.2409 1.590741436 2.57973948 3.288559215 1.187160299 2.927020264 1.857364789 1.768538118 2.132098036 2.259013286 1 19.63147948 -10.65392997 0.282572429 1.13E-11 2.329020287 0.25770963 0.597384877 34.00127955 1.714647204 24.87444342 0.718647923 2.22E-11 10.65392997 2.329020287 SQS(ph)WEERGDR ddPTM_HeLa_A486_30min_R1 2 SQSWEERGDR 10 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6;I1E4Y6;Q6Y7W6-3 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 S(0.003)QS(0.997)WEERGDR;S(0.022)QS(0.978)WEERGDR ; 119.77 0.00013617 4449700000 2433400 2561300 2323400 914650 3468400 2618200 3145900 3588600 2344100 2980600 TRUE FALSE FALSE 2262831.226 2358333.26 3223082.703 2129351.424 3033360.93 2295193.104 2358762.546 2771554.119 2547288.475 2234238.36 1.01279759 1.055542373 1.442586772 0.953054724 1.357671135 1.027282113 1.055734513 1.24049169 1.140114914 1 21.09135168 SQS(ph)YIPTSGCR ddPTM_HeLa_A485_30min_R1 6 SQSYIPTSGCR 11 0 A0A087WZ32;A0A087X038;A8K727;Q9HB19;E5RHB5 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 SQS(1)YIPTSGCR;SQS(1)YIPTSGCR;SQS(1)YIPTSGCR;SQS(1)YIPTSGCR;SQS(1)YIPTSGCR;S(0.002)QS(0.996)Y(0.001)IPTSGCR ;;;;; 236.28 1.13E-21 7767340000 4138521 4373973 4838431 5584700 7322530 4481505 7123540 7029240 5235171 7249050 TRUE FALSE FALSE 5059120.719 4885471.094 6628367.971 5889778.02 6593473.202 4716149.672 5601537.485 5305307.869 6285821.8 5441995.244 0.929644458 0.897735274 1.218003264 1.082282831 1.211591136 0.866621425 1.029316865 0.974882857 1.155058305 1 22.37570427 -4.705142789 24.99985988 1.063499556 0.913688783 0.26029301 0.10337414 120.3264397 53431.70974 0.026634861 0.070469163 1.97E-05 4.705142789 -0.149810773 SQS(ph)YIPTSGCR ddPTM_HeLa_A486_30min_R1 4 SQSYIPTSGCR 11 0 A0A087WZ32;A0A087X038;A8K727;Q9HB19;E5RHB5 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 SQS(1)YIPTSGCR;S(0.001)QS(0.999)YIPTSGCR;S(0.023)QS(0.965)Y(0.012)IPTSGCR;SQS(1)YIPTSGCR ;;; 241.84 7.42E-22 8434370000 4616060 5490110 4588610 1659425 6297530 5482060 6061400 6711580 4798640 5485990 TRUE FALSE FALSE 4292498.031 5055053.689 6365442.679 3863225.263 5507635.065 4805739.175 4544773.609 5183499.747 5214589.979 4112262.396 1.043828827 1.229263408 1.54791744 0.939440359 1.33931995 1.168636315 1.105175976 1.260498297 1.268058669 1 21.97150089 -5.279470881 24.99706004 1.171542499 1.269229327 0.095373926 0.162221681 2299.103764 3187240.081 0.04504042 0.06695844 5.25E-06 5.279470881 0.097686828 SQSAAVT(ph)PSSTTSSTR ddPTM_HeLa_A485_30min_R1 1 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 SQSAAVT(0.914)PS(0.079)S(0.007)TTSSTR 344.71 1.18E-91 341290000 236220 308030 286640 262280 393680 284210 313560 348590 253080 344520 TRUE FALSE FALSE 288766.3241 344051.429 392680.0641 276607.6923 354483.8369 299090.7961 246565.3445 263097.7559 303870.8346 258637.5044 1.116490529 1.330245703 1.518264201 1.069480209 1.370581725 1.156409225 0.953324016 1.017245185 1.174890839 1 17.98057197 -6.515075963 5.444992848 1.038656754 1.284111667 0.443993176 0.129055721 0.161367547 15.98088266 0.048098127 0.039399008 3.05E-07 6.515075963 0.245454913 SQSAAVT(ph)PSSTTSSTR ddPTM_HeLa_A486_30min_R1 2 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 SQSAAVT(0.998)PS(0.002)STTSSTR;SQSAAVT(0.999)PS(0.001)STTSSTR ; 273.52 9.19E-58 821370000 560110 561130 461860 188572 666370 550560 609010 575790 483640 577900 TRUE FALSE FALSE 520849.1814 516664.0152 640704.561 439005.1459 582787.6609 482637.5049 456629.2565 444695.1864 525562.3046 433190.0785 1.202357134 1.192695865 1.479037939 1.013423824 1.345339355 1.114147181 1.054108298 1.026559029 1.213237169 1 18.72464068 -6.441553952 6.65340857 1.076721227 1.243190318 0.314788212 0.122743321 0.310875793 21.31859982 0.041929143 0.036729363 3.62E-07 6.441553952 0.166469091 SQSASVES(ph)IPEVLEECTSPADHSDSASVHDMDYVNPR ddPTM_HeLa_A486_30min_R1 1 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 S(0.031)QS(0.031)AS(0.024)VES(0.914)IPEVLEECTSPADHSDSASVHDMDYVNPR 93.96 4.94E-05 93069000 31320 38097 37631 3200 47125 28084 32044 34166 37081 14089 TRUE FALSE FALSE 29124.62974 35078.05497 52202.73099 7449.761719 41214.14308 24619.28162 24026.25227 26387.14764 40295.21094 10561.0227 2.757747102 3.321463838 4.942961728 0.705401544 3.902476518 2.331145603 2.274992959 2.498540946 3.815464856 1 13.36646193 -5.246320602 24.9967157 2.482967522 3.638797918 0.229466669 1.085994086 1337.542788 2211430.584 0.282083786 0.486127105 5.67E-06 5.246320602 1.155830396 SQSASVESIPEVLEECTS(ph)PADHSDSASVHDMDYVNPR ddPTM_HeLa_A485_30min_R1 1 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 SQSAS(0.001)VES(0.034)IPEVLEECT(0.261)S(0.292)PADHS(0.281)DS(0.065)AS(0.065)VHDMDYVNPR 65.152 0.0026632 92374000 10093 13181 16370 9384.1 20801 11657 15811 16497 14848 15016 TRUE FALSE FALSE 12338.15303 14722.40329 22425.94421 9896.729621 18729.9794 12267.34249 12432.85069 12451.08488 17827.85741 11272.78755 1.094507723 1.306012663 1.989387639 0.877930998 1.661521547 1.088226177 1.102908276 1.104525818 1.581495023 1 13.46055669 -6.310264348 24.99949819 1.177431235 1.386745964 0.099383887 0.316712538 986.1683923 504937.8794 0.108861793 0.096007212 4.89E-07 6.310264348 0.20931473 SQSASVESIPEVLEECTS(ph)PADHSDSASVHDMDYVNPR ddPTM_HeLa_A486_30min_R1 1 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 SQSASVESIPEVLEECT(0.083)S(0.455)PADHS(0.214)DS(0.102)AS(0.147)VHDMDYVNPR 249.44 3.54E-52 306830000 99707 133160 126070 11009 168470 111090 126760 122230 105470 78443 TRUE FALSE FALSE 92718.05419 122607.9166 174887.6803 25629.50836 147338.9217 97384.84528 95043.30727 94400.89726 114612.2245 58800.36222 1.576827943 2.085155805 2.974261955 0.435873308 2.505748538 1.656194649 1.616372819 1.605447546 1.949175484 1 15.84353742 -11.12370746 0.194568012 5.23E-11 2.031439102 0.134846023 0.630028701 75.22437486 2.050293891 36.53457825 1.805127734 7.52E-12 11.12370746 2.031439102 SQSASVESIPEVLEECTSPADHSDS(ph)ASVHDMDYVNPR ddPTM_HeLa_A486_30min_R1 1 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 SQSASVESIPEVLEECT(0.004)S(0.018)PADHS(0.018)DS(0.48)AS(0.48)VHDMDYVNPR 97.781 4.93E-05 50493000 21450 27618 24204 7665.3 33878 24108 24175 27881 25603 19137 TRUE FALSE FALSE 19946.46577 25429.4491 33576.43701 17845.20578 29628.70534 21133.80007 18126.1593 21533.10494 27822.28865 14344.97064 1.390484949 1.772708341 2.340641738 1.244004344 2.065442034 1.473255025 1.26358985 1.501090904 1.939515204 1 13.80825739 -6.471108891 22.68272934 1.453608773 1.766795319 0.16852255 0.362446156 240.324239 105296.4268 0.124897065 0.110146163 3.38E-07 6.471108891 0.313186546 SQSASVESIPEVLEECTSPADHSDSAS(ph)VHDMDYVNPR ddPTM_HeLa_A485_30min_R1 2 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 SQSASVESIPEVLEECT(0.023)S(0.023)PADHS(0.297)DS(0.297)AS(0.361)VHDMDYVNPR;SQSASVESIPEVLEECT(0.001)S(0.004)PADHS(0.009)DS(0.049)AS(0.937)VHDMDYVNPR ; 240.1 1.45E-51 551400000 125955 175447 199479 114755 258837 141108 204029 204579 173413 154279 TRUE FALSE FALSE 153973.2552 195964.0005 273274.5831 121023.7751 233066.2794 148496.1967 160436.5374 154405.6795 208215.3985 115820.0846 1.329417568 1.691969067 2.359474905 1.044929085 2.012313152 1.282128201 1.38522207 1.333151154 1.79774863 1 16.82152593 -6.29347915 24.89164981 1.38207019 1.689482592 0.157087522 0.378069997 1303.386128 1012594.591 0.129236103 0.11398464 5.09E-07 6.29347915 0.307412401 SQSASVESIPEVLEECTSPADHSDSAS(ph)VHDMDYVNPR ddPTM_HeLa_A486_30min_R1 1 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 SQSASVESIPEVLEECTSPADHS(0.018)DS(0.018)AS(0.963)VHDMDYVNPR 322.58 1.27E-111 263490000 86778 122450 124880 16310 140610 97054 106910 124940 111520 66679 TRUE FALSE FALSE 80695.31032 112746.616 173236.8804 37970.50426 122973.3827 85080.46425 80159.98722 96493.88942 121186.6434 49982.14439 1.614482758 2.255737872 3.46597535 0.759681377 2.460346273 1.702217167 1.603772471 1.930567217 2.424598721 1 15.60912518 -5.263279601 24.99578253 1.764185577 2.426432513 0.208436627 0.658794201 287.2997928 3902420.889 0.178804214 0.281340121 5.45E-06 5.263279601 0.662246936 SQSDLDDQHDYDS(ph)VAS(ph)DEDTDQEPLR ddPTM_HeLa_A485_30min_R1 4 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 SQSDLDDQHDYDS(1)VAS(1)DEDTDQEPLR;SQSDLDDQHDYDS(1)VAS(1)DEDTDQEPLR;SQSDLDDQHDYDS(1)VAS(1)DEDTDQEPLR;SQSDLDDQHDY(0.045)DS(0.957)VAS(0.966)DEDT(0.031)DQEPLR ;;; 225.51 2.46E-38 3607080000 953679 1360686 1314841 1109145 1600955 1292541 1603550 1720030 1244931 1421797 TRUE FALSE FALSE 1165821.603 1519806.391 1801255.401 1169734.783 1441558.299 1360216.448 1260938.443 1298189.946 1494777.233 1067369.174 1.092238404 1.423880723 1.687565507 1.095904595 1.350571418 1.274363623 1.181351751 1.216252049 1.40043133 1 20.02562782 -5.306695809 24.99973706 1.232465169 1.403494913 0.189594839 0.172474338 743.2498116 410570.9038 0.048025657 0.071233823 4.94E-06 5.306695809 0.171029744 SQSDLDDQHDYDS(ph)VAS(ph)DEDTDQEPLR ddPTM_HeLa_A486_30min_R1 1 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 SQSDLDDQHDYDS(1)VAS(1)DEDTDQEPLR 145.23 5.81E-09 1210800000 437470 503780 493010 159390 579920 516210 554090 618480 440150 507350 TRUE FALSE FALSE 406805.6121 463858.6381 683916.6753 371067.9751 507181.0261 452525.2586 415450.8214 477665.6053 478302.5564 380306.2577 1.069678986 1.219697622 1.798331375 0.975708308 1.333612098 1.189896957 1.092411216 1.256002487 1.257677324 1 18.53680215 SQSDLDDQHDYDSVAS(ph)DEDTDQEPLR ddPTM_HeLa_A485_30min_R1 1 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 SQSDLDDQHDYDSVAS(0.999)DEDT(0.001)DQEPLR 248.98 4.09E-50 1525400000 194420 330010 364570 280290 377520 339590 373560 412760 328770 375180 TRUE FALSE FALSE 237668.0583 368601.7988 499439.614 295601.533 339932.7832 357370.4073 293745.8543 311529.9628 394751.1233 281654.5307 0.84382828 1.308701827 1.773234795 1.049518118 1.206913954 1.268825346 1.042929626 1.106071193 1.401543666 1 18.10356715 SQSDLDDQHDYDSVAS(ph)DEDTDQEPLR ddPTM_HeLa_A486_30min_R1 1 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 SQSDLDDQHDYDSVAS(1)DEDTDQEPLR 183.06 2.78E-20 864320000 937700 829920 614040 397640 1047700 991760 1160000 1126400 861250 1359500 TRUE FALSE FALSE 871972.0723 764154.1167 851812.7326 925726.0156 916287.6966 869406.7347 869755.7308 869943.3091 935903.8434 1019072.351 0.855652762 0.749852663 0.835870713 0.908400679 0.899139002 0.853135436 0.853477901 0.853661968 0.918388025 1 19.95882505 -13.99999999 0.096775528 1.461879094 0.752746533 0.591796256 0.039446772 149.8176458 0.991626938 14.02721777 0.8097259 1.00E-14 13.99999999 -0.709132561 SQSES(ph)SDEVTELDLSHGK ddPTM_HeLa_A486_30min_R1 1 SQSESSDEVTELDLSHGK 18 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 S(0.001)QS(0.003)ES(0.498)S(0.498)DEVTELDLSHGK 183.56 6.22E-18 143030000 189170 205400 131830 80835 238940 234050 248920 256820 210180 251220 TRUE FALSE FALSE 175910.1599 189123.3559 182878.1065 188187.9652 208969.9172 205175.2906 186637.5832 198347.6923 228398.5716 188312.8768 0.934137712 1.004303896 0.971139678 0.99933668 1.109695315 1.089544667 0.991103669 1.053287994 1.212867519 1 17.52277213 -5.620955553 5.244436854 1.074858725 0.975098732 0.398211548 0.060149115 0.227289004 9.897393177 0.018065602 0.023499018 2.39E-06 5.620955553 -0.099759994 SQSES(ph)SDEVTELDLSHGKK ddPTM_HeLa_A485_30min_R1 1 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 SQSES(0.679)S(0.32)DEVTELDLSHGKK 245.36 6.42E-46 850200000 711500 668710 384700 812410 839850 862970 1228800 1384300 564140 1257800 TRUE FALSE FALSE 869770.7204 746909.8175 527016.5387 856789.9012 756231.5851 908153.7748 966256.8416 1044798.255 677357.7234 944253.6081 0.921119827 0.791005521 0.558130289 0.907372653 0.800877623 0.961768922 1.02330225 1.106480553 0.717347244 1 19.84881487 -6.125706033 1.950573141 0.974844478 0.774902658 0.277679566 0.13154865 0.423671316 3.189021176 0.050962604 0.051319585 7.49E-07 6.125706033 -0.19994182 SQSES(ph)SDEVTELDLSHGKK ddPTM_HeLa_A486_30min_R1 1 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 S(0.001)QS(0.004)ES(0.611)S(0.384)DEVTELDLSHGKK 126.32 4.35E-06 373570000 550740 452910 243110 198710 475800 510660 612610 551930 354990 667000 TRUE FALSE FALSE 512135.97 417019.7621 337248.7027 462606.9222 416120.7273 447659.9612 459328.4985 426267.5875 385760.819 499978.8586 1.024315251 0.834074791 0.674525926 0.925252967 0.832276646 0.895357781 0.918695842 0.852571224 0.771554262 1 18.93150757 -6.265136339 23.62237449 0.880362772 0.850288358 0.016531583 0.097981524 870.3773502 5561415.858 0.034320213 0.031492607 5.43E-07 6.265136339 -0.030074414 SQSESS(ph)DEVTELDLSHGKK ddPTM_HeLa_A485_30min_R1 1 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 S(0.001)QS(0.002)ES(0.351)S(0.646)DEVTELDLSHGKK 199.01 1.55E-25 660860000 395050 394400 204420 464980 498400 494310 702780 799740 336060 677490 TRUE FALSE FALSE 482927.5096 440521.6492 280043.4646 490380.68 448777.546 520191.3073 552625.3118 603602.5111 403504.1595 508604.2113 0.949515358 0.866138422 0.550611769 0.964169523 0.882370881 1.022782147 1.086552765 1.18678237 0.793355915 1 18.95618388 -5.924127875 1.757396855 1.032960923 0.804824737 0.288945176 0.139697327 0.421954227 2.666282091 0.052390903 0.06122172 1.19E-06 5.924127875 -0.228136186 SQSESS(ph)DEVTELDLSHGKK ddPTM_HeLa_A486_30min_R1 1 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 SQSES(0.158)S(0.842)DEVTELDLSHGKK 221.43 8.53E-35 773600000 600360 690590 439950 297600 750730 754240 964780 902580 545450 885720 TRUE FALSE FALSE 558277.8643 635865.1333 610310.4223 692827.8399 656566.4431 661189.5374 723381.8396 697082.2372 592730.0452 663929.9469 0.840868629 0.957729255 0.919239183 1.043525515 0.988909216 0.995872442 1.08954543 1.049933416 0.892759918 1 19.3406715 -3.789507386 0.781690195 1.013278018 0.607247036 0.459423007 0.053408546 4.415369777 1.240875645 0.020106276 1.849456033 0.000162365 3.789507386 -0.406030982 SQSEYKPDT(ph)PQSGLEYSGIQELEDRR ddPTM_HeLa_A486_30min_R1 1 SQSEYKPDTPQSGLEYSGIQELEDRR 26 2 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 SQSEYKPDT(0.997)PQS(0.003)GLEYSGIQELEDRR 79.782 0.007259 214800000 93218 91129 42113 54143 86177 99709 128650 124060 69026 162300 TRUE FALSE FALSE 86683.89958 83907.60615 58420.28143 126047.6402 75367.87709 87407.91735 96460.40928 95814.24621 75009.22926 121659.0236 0.712515167 0.689694884 0.480196862 1.036073088 0.61950092 0.718466372 0.79287509 0.787563827 0.616552945 1 16.89248381 -11.38217544 2.292817607 3.10493547 0.720137897 0.275704107 0.137502374 9003884.849 1150041.307 98088537.22 0.034419968 4.15E-12 11.38217544 -2.384797574 SQSFNTDTTTSGISSMSS(ph)SPSR ddPTM_HeLa_A486_30min_R1 1 SQSFNTDTTTSGISSMSSSPSR 22 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 SQSFNTDTTTSGISSMS(0.117)S(0.556)S(0.27)PS(0.057)R 242.71 8.41E-47 223900000 221000 227230 140470 54717 178660 192600 172780 184420 183710 227250 TRUE FALSE FALSE 205509.0412 209223.4672 194863.7459 127383.9412 156250.7969 168838.9702 129548.6165 142431.5919 199634.1307 170345.1209 1.206427517 1.228232815 1.143935001 0.747799177 0.917260184 0.99115824 0.760506763 0.836135436 1.171939236 1 17.3781011 -5.094178104 5.882451307 0.90811639 1.210430753 0.538483935 0.11761184 0.162507483 8.185663354 0.031890737 0.056500641 8.05E-06 5.094178104 0.302314364 SQSKS(ph)PTGTPAR ddPTM_HeLa_A485_30min_R1 2 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 S(0.021)QS(0.02)KS(0.953)PT(0.004)GT(0.003)PAR;S(0.148)QS(0.148)KS(0.698)PT(0.006)GT(0.001)PAR ; 78.285 0.0035219 207969000 225729 257514 211234 253789 278444 331329 398764 408797 195516 382206 TRUE FALSE FALSE 275941.6373 287628.0222 289378.2468 267652.8504 250721.1377 348676.8741 313564.8138 308538.8948 234754.2678 286929.0782 0.961706771 1.002435947 1.008535798 0.932818842 0.873808745 1.215202294 1.092830381 1.075314139 0.818161301 1 18.13033466 SQSKS(ph)PTGTPAR ddPTM_HeLa_A486_30min_R1 2 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 S(0.003)QS(0.002)KS(0.986)PT(0.01)GTPAR;S(0.022)QS(0.151)KS(0.791)PT(0.013)GT(0.022)PAR ; 107.98 0.0002382 156797000 322955 210123 153533 111517 276925 238562 300532 316968 226408 390840 TRUE FALSE FALSE 300317.5222 193472.0882 212985.0894 259617.2118 242190.4843 209130.646 225335.7149 244801.3058 246033.2277 292971.1201 1.025075517 0.660379385 0.726983224 0.886152914 0.826670165 0.71382683 0.769139685 0.835581697 0.839786624 1 18.16039893 -8.300609468 1.417104081 0.999577267 0.795450113 0.264768586 0.096555264 1.426759673 4.708210306 0.090104503 0.02653194 5.00E-09 8.300609468 -0.204127154 SQSLPTTLLS(ph)PVR ddPTM_HeLa_A485_30min_R1 4 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SQSLPT(0.03)T(0.03)LLS(0.94)PVR;SQSLPTTLLS(1)PVR;SQSLPTTLLS(1)PVR;SQSLPTTLLS(1)PVR ;;; 195.6 3.73E-18 597950000 483270 608410 568720 479390 676120 559280 685210 635560 448670 576460 TRUE FALSE FALSE 590771.7442 679558.257 779113.1944 505577.8618 608803.1188 588563.036 538809.2858 479687.9135 538713.9536 432759.131 1.365128317 1.570292129 1.800339123 1.168266192 1.406794393 1.360024535 1.245055846 1.108440884 1.244835556 1 18.72320473 -6.604071402 0.434902896 1.024932396 1.583326156 0.532289956 0.150691322 0.923261114 0.387643812 0.158523921 0.186836697 2.49E-07 6.604071402 0.55839376 SQSLPTTLLS(ph)PVR ddPTM_HeLa_A486_30min_R1 4 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SQSLPTTLLS(1)PVR;SQSLPTTLLS(1)PVR;SQSLPTTLLS(1)PVR;SQSLPTTLLS(1)PVR ;;; 261.5 2.05E-41 637400000 678752 664293 505052 185692 727418 512085 563979 532617 501086 640403 TRUE FALSE FALSE 631174.9899 611652.0034 700621.6602 432300.3604 636178.4515 448909.1592 422865.489 411351.736 544520.5379 480041.9205 1.314833066 1.274163729 1.459500994 0.900547102 1.325256034 0.935145745 0.880892837 0.856907946 1.134318722 1 18.87280087 -5.653006168 0.976701072 0.95370752 1.344515211 0.47071272 0.152786415 0.487360881 0.980692895 0.067731266 0.121465198 2.22E-06 5.653006168 0.390807691 SQSNPILGS(ph)PFFSHFDGQDSYAAAVR ddPTM_HeLa_A485_30min_R1 2 SQSNPILGSPFFSHFDGQDSYAAAVR 26 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 SQSNPILGS(1)PFFSHFDGQDSYAAAVR;SQSNPILGS(0.999)PFFSHFDGQDSYAAAVR ; 153.88 1.84E-09 162807000 53862.9 55247.3 63572.1 37038.1 77753.8 47781 65557.3 69978 46680 63143 TRUE FALSE FALSE 65844.51628 61707.99115 87090.06525 39061.39762 70012.35866 50282.73928 51550.4473 52815.78578 56048.24783 47402.61216 1.389048267 1.301784613 1.8372419 0.824034707 1.476972586 1.060758827 1.087502248 1.114195682 1.182387326 1 15.53267894 -5.266102173 24.99992603 1.124040988 1.48860089 0.454304555 0.201284208 371.7138784 1992973.571 0.053980339 0.083131795 5.42E-06 5.266102173 0.364559902 SQSNPILGS(ph)PFFSHFDGQDSYAAAVR ddPTM_HeLa_A486_30min_R1 1 SQSNPILGSPFFSHFDGQDSYAAAVR 26 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 SQSNPILGS(0.999)PFFSHFDGQDSYAAAVR 118.82 0.00010389 75772000 62520 66437 60736 15099 72023 53453 64218 67934 55429 52781 TRUE FALSE FALSE 58137.67085 61172.29016 84254.60577 35151.23506 62989.20375 46858.51233 48149.97717 52466.91119 60233.63035 39564.29405 1.469447952 1.546148911 2.129561712 0.888458543 1.592071974 1.184363666 1.217005846 1.326117714 1.522423988 1 15.27191139 -5.265410154 24.99738067 1.271286863 1.698162452 0.40750675 0.257130217 352.1783587 2217086.451 0.069482146 0.107525114 5.43E-06 5.265410154 0.426875589 SQSS(ph)DTEQQS(ph)PTSGGGK ddPTM_HeLa_A485_30min_R1 7 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 SQSS(1)DTEQQS(1)PTSGGGK;SQS(0.005)S(0.995)DTEQQS(1)PTSGGGK;SQS(0.006)S(0.994)DTEQQS(0.932)PT(0.068)SGGGK;S(0.015)QS(0.136)S(0.85)DTEQQS(1)PTSGGGK;SQS(0.148)S(0.852)DTEQQS(1)PTSGGGK;S(0.004)QS(0.034)S(0.962)DTEQQS(1)PTSGGGK;S(0.002)QS(0.111)S(0.887)DT(0.421)EQQS(0.578)PT(0.001)SGGGK ;;;;;; 351.41 5.75E-105 12272381000 7674349 7585212 5309827 10464865 10025755 8165166 12422637 13060330 6920349 12764432 TRUE FALSE FALSE 9381481.459 8472236.561 7274152.968 11036534.08 9027555.63 8592681.466 9768439.121 9857263.59 8309199.567 9582494.014 0.97902294 0.884136901 0.759108532 1.151739209 0.942088314 0.896706166 1.019404667 1.028674119 0.867122855 1 23.19196976 -5.243172955 24.98998074 0.98350332 0.875094229 0.250993828 0.088900943 1235.993356 1690939.491 0.024019063 0.041499634 5.71E-06 5.243172955 -0.108409091 SQSS(ph)DTEQQS(ph)PTSGGGK ddPTM_HeLa_A486_30min_R1 9 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 SQS(0.007)S(0.993)DTEQQS(0.999)PT(0.001)SGGGK;SQSS(1)DTEQQS(0.97)PT(0.03)SGGGK;SQS(0.001)S(0.999)DTEQQS(0.997)PT(0.003)SGGGK;S(0.002)QS(0.119)S(0.879)DTEQQS(0.991)PT(0.009)S(0.001)GGGK;SQS(0.029)S(0.971)DTEQQS(0.996)PT(0.004)SGGGK;S(0.058)QS(0.408)S(0.533)DTEQQS(0.996)PT(0.003)SGGGK;S(0.054)QS(0.437)S(0.508)DT(0.391)EQQS(0.599)PT(0.009)S(0.001)GGGK;S(0.227)QS(0.345)S(0.428)DT(0.017)EQQS(0.983)PTSGGGK;S(0.018)QS(0.139)S(0.843)DTEQQS(0.999)PT(0.001)SGGGK ;;;;;;;; 352.11 1.06E-122 12735643000 9385146 9558218 5063511 4392640 9314646 10400900 12874199 12191740 7289867 12328658 TRUE FALSE FALSE 8727295.73 8800789.995 7024238.065 10226287.91 8146316.243 9117742.707 9652938.241 9415946.946 7921758.541 9241481.791 0.944361081 0.95231373 0.760077034 1.10656366 0.881494594 0.986610471 1.044522779 1.018878483 0.85719571 1 23.13969276 -5.265113354 24.99792003 0.984054303 0.892256932 0.226280336 0.083990058 506.6815119 3447491.285 0.022950314 0.035563559 5.43E-06 5.265113354 -0.091797372 SQSS(ph)DTEQQSPTSGGGK ddPTM_HeLa_A485_30min_R1 9 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQS(0.25)S(0.75)DTEQQSPTSGGGK;SQS(0.001)S(0.999)DTEQQSPTSGGGK;SQS(0.001)S(0.999)DTEQQSPTSGGGK;SQS(0.001)S(0.999)DTEQQSPTSGGGK;SQS(0.02)S(0.979)DT(0.001)EQQSPTSGGGK;S(0.002)QS(0.022)S(0.976)DTEQQSPTSGGGK;SQS(0.037)S(0.962)DTEQQSPTSGGGK;SQS(0.004)S(0.996)DTEQQSPTSGGGK;S(0.026)QS(0.144)S(0.829)DT(0.001)EQQSPTSGGGK ;;;;;;;; 442.29 1.82E-193 13011279000 2874515 2863276 2210004 3520705 3810102 3258420 4758818 4911311 2753929 4550482 TRUE FALSE FALSE 3513940.945 3198111.221 3027576.446 3713032.199 3430754.867 3429025.833 3742057.658 3706804.277 3306617.29 3416130.583 1.028631915 0.936179441 0.886258992 1.086911671 1.00428095 1.003774812 1.09540826 1.085088578 0.967942299 1 21.70393169 -5.266949239 24.99901112 1.038282179 0.948939049 0.354998728 0.051982379 474.5433513 2153070.919 0.014682255 0.022500806 5.41E-06 5.266949239 -0.08934313 SQSS(ph)DTEQQSPTSGGGK ddPTM_HeLa_A486_30min_R1 6 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQS(0.005)S(0.995)DTEQQSPTSGGGK;S(0.001)QS(0.361)S(0.637)DTEQQSPTSGGGK;SQS(0.012)S(0.988)DTEQQSPTSGGGK;SQSS(1)DTEQQSPTSGGGK;SQS(0.005)S(0.995)DTEQQSPTSGGGK;S(0.006)QS(0.308)S(0.686)DTEQQSPTSGGGK ;;;;; 456.93 3.07E-216 13087790000 7053800 7174050 4399990 3021750 7339450 7619830 9050700 8973450 5834860 8862050 TRUE FALSE FALSE 6559365.046 6605552.151 6103783.964 7034786.711 6418867.743 6679772.847 6786119.131 6930391.324 6340630.363 6642934.998 0.987419725 0.994372541 0.91883843 1.058987739 0.966269841 1.005545418 1.021554348 1.043272488 0.954492309 1 22.66338937 -5.261068234 24.99999966 1.00779202 0.969626466 0.21694403 0.034940486 53.60321715 3610639.377 0.009355213 0.015010147 5.48E-06 5.261068234 -0.038165554 SQSS(ph)SQFR ddPTM_HeLa_A486_30min_R1 3 SQSSSQFR 8 0 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 1 0 SQS(0.052)S(0.752)S(0.197)QFR;SQS(0.048)S(0.904)S(0.048)QFR;SQS(0.018)S(0.762)S(0.22)QFR ;; 141.91 0.00040018 4378100000 5472100 6270600 5516200 1778790 7125200 5409200 5964800 6029200 5296700 6066600 TRUE FALSE FALSE 5088534.048 5773694.819 7652220.369 4141113.015 6231490.976 4741867.901 4472343.951 4656482.777 5755822.221 4547483.873 1.118977921 1.269646024 1.68273722 0.910638307 1.370316234 1.042745402 0.983476594 1.023969058 1.265715807 1 22.11663709 -5.853140518 1.318108911 1.067620605 1.312485449 0.185949534 0.200351235 0.708952418 2.581948851 0.080975891 0.105008497 1.40E-06 5.853140518 0.244864845 SQSSDTEQQS(ph)PTSGGGK ddPTM_HeLa_A485_30min_R1 7 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQSSDTEQQS(0.997)PT(0.003)SGGGK;SQSSDTEQQS(0.982)PT(0.016)S(0.001)GGGK;SQSSDTEQQS(0.693)PT(0.294)S(0.014)GGGK;SQSSDTEQQS(0.998)PT(0.001)SGGGK;SQSSDTEQQS(0.905)PT(0.086)S(0.009)GGGK;SQSSDTEQQS(0.921)PT(0.079)SGGGK;SQSSDTEQQS(0.999)PT(0.001)SGGGK ;;;;;; 423.85 1.61E-172 28686299000 3012964 3000918 2288075 3563362 4024211 3204140 4620183 4936281 2828644 4711741 TRUE FALSE FALSE 3683187.447 3351849.256 3134529.157 3758019.443 3623546.423 3371903.816 3633043.159 3725650.345 3396326.905 3537190.682 1.041274779 0.947602082 0.886163467 1.06243055 1.024413652 0.953271712 1.027098476 1.053279475 0.960176369 1 21.75417256 -5.275484516 24.99404367 1.01250308 0.957272298 0.20408796 0.048082763 1191.905073 2121052.352 0.013691988 0.020414372 5.30E-06 5.275484516 -0.055230782 SQSSDTEQQS(ph)PTSGGGK ddPTM_HeLa_A486_30min_R1 12 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQSSDTEQQS(0.498)PT(0.498)S(0.004)GGGK;SQSSDTEQQS(0.901)PT(0.098)S(0.001)GGGK;SQSSDTEQQS(0.754)PT(0.245)S(0.001)GGGK;SQSSDTEQQS(0.965)PT(0.023)S(0.012)GGGK;SQSSDTEQQS(0.766)PT(0.226)S(0.007)GGGK;SQSSDTEQQS(0.91)PT(0.082)S(0.008)GGGK;SQSSDTEQQS(0.996)PT(0.003)SGGGK;SQSSDT(0.068)EQQS(0.927)PT(0.004)S(0.001)GGGK;SQSSDT(0.003)EQQS(0.993)PT(0.003)S(0.001)GGGK;SQSSDTEQQS(0.998)PT(0.002)SGGGK;SQSSDTEQQS(0.937)PT(0.063)SGGGK;SQSSDT(0.007)EQQS(0.992)PT(0.002)SGGGK ;;;;;;;;;;; 430.62 8.11E-173 45109450000 8465001 8284100 4666351 3565616 8158660 8518231 10760424 9972756 6222877 10178421 TRUE FALSE FALSE 7871648.143 7627637.746 6473287.076 8300934.244 7135324.786 7467338.266 8068052.103 7702177.163 6762280.989 7629678.131 1.031714315 0.999732573 0.848435146 1.087979611 0.935206527 0.97872258 1.057456417 1.00950224 0.886312748 1 22.86319077 -5.292406551 24.99995182 0.993601147 0.963937681 0.046602786 0.069019183 2675.254572 2159740.593 0.019381284 0.02874979 5.10E-06 5.292406551 -0.029663465 SQSSDTEQQSPT(ph)SGGGK ddPTM_HeLa_A485_30min_R1 3 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQSSDTEQQS(0.168)PT(0.824)S(0.007)GGGK;SQSSDTEQQS(0.226)PT(0.773)S(0.002)GGGK;SQSSDTEQQS(0.442)PT(0.556)S(0.001)GGGK ;; 402.19 1.64E-189 2247410000 1190570 1154640 842425 1382420 1497490 1238390 1738560 1884400 1130356 1813900 TRUE FALSE FALSE 1455408.189 1289665.104 1154073.064 1457938.104 1348394.638 1303230.185 1367102.453 1422247.945 1357208.081 1361728.112 1.068794994 0.947079738 0.847506234 1.070652864 0.990208416 0.957041405 1.003946706 1.044443404 0.996680665 1 20.37700725 -6.958741815 7.774125677 1.017165351 0.977405414 0.058748953 0.060727624 0.62386516 100.0938812 0.026272027 0.017583991 1.10E-07 6.958741815 -0.039759937 SQSSEGVSSLSSS(ph)PSNSLETQSQSLSR ddPTM_HeLa_A485_30min_R1 2 SQSSEGVSSLSSSPSNSLETQSQSLSR 27 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SQSSEGVSSLS(0.002)S(0.043)S(0.948)PS(0.006)NSLETQSQSLSR;SQSSEGVSSLSS(0.013)S(0.974)PS(0.013)NSLETQSQSLSR ; 218.71 2.89E-38 1233450000 376380 483850 414630 363450 543550 446520 468980 588700 389200 536870 TRUE FALSE FALSE 460104.4325 540432.0486 568018.8912 383304.3532 489432.2535 469899.0967 368778.5918 444320.402 467308.87 403038.1894 1.141590164 1.340895386 1.409342604 0.951037304 1.214357017 1.165892238 0.914996647 1.102427546 1.159465486 1 18.62055702 -5.258080776 24.9997089 1.080091757 1.301637984 0.46536746 0.110123049 267.3883647 1990294.248 0.030524005 0.050183686 5.52E-06 5.258080776 0.221546227 SQSSEGVSSLSSS(ph)PSNSLETQSQSLSR ddPTM_HeLa_A486_30min_R1 1 SQSSEGVSSLSSSPSNSLETQSQSLSR 27 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SQSSEGVSSLSS(0.049)S(0.943)PS(0.007)NS(0.001)LETQSQSLSR 230.84 5.89E-39 536810000 216800 253280 196310 68012 264920 204630 218830 238860 194610 241950 TRUE FALSE FALSE 201603.4396 233209.1704 272326.4894 158335.3731 231691.2633 179384.8311 164076.4195 184476.7923 211478.9515 181364.1452 1.111594794 1.285861492 1.501545353 0.873024671 1.277492104 0.98908652 0.904679474 1.017162417 1.166046085 1 17.46852974 -5.26678784 24.98654037 1.036287267 1.29828664 0.429178357 0.141147171 421.7587689 1970342.599 0.039619976 0.060755992 5.41E-06 5.26678784 0.261999373 SQSSHS(ph)YDDSTLPLIDR ddPTM_HeLa_A485_30min_R1 5 SQSSHSYDDSTLPLIDR 17 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;H0YC95 O60716-5 CTNND1 Catenin delta-1 1 0 SQSSHS(1)YDDSTLPLIDR;SQSSHS(1)YDDSTLPLIDR;S(0.001)QS(0.004)S(0.021)HS(0.974)YDDSTLPLIDR;SQSS(0.001)HS(0.998)YDDSTLPLIDR;S(0.005)QS(0.021)S(0.096)HS(0.878)YDDSTLPLIDR ;;;; 254.82 3.22E-44 1766610000 726903 1067940 907541 621773 1144283 898684 1078970 1153095 866461 1122352 TRUE FALSE FALSE 888600.0646 1192826.293 1243278.182 655738.8846 1030354.167 945737.7046 848439.2451 870296.6433 1040351.775 842570.3018 1.054630175 1.415699427 1.475577978 0.778260144 1.222870263 1.122443673 1.006965524 1.032906858 1.234735871 1 19.68443754 -5.240974029 24.99663944 1.065822192 1.325342199 0.356125359 0.158743266 895.4122026 1093666.474 0.0420664 0.072747534 5.74E-06 5.240974029 0.259520008 SQSSHS(ph)YDDSTLPLIDR ddPTM_HeLa_A486_30min_R1 2 SQSSHSYDDSTLPLIDR 17 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12;O60716-27;O60716-29;O60716-31;O60716-32;O60716-26;O60716-25;O60716-30;O60716-28;H0YC95 O60716-5 CTNND1 Catenin delta-1 1 0 SQSSHS(1)YDDSTLPLIDR;SQSS(0.001)HS(0.999)YDDSTLPLIDR ; 210.14 1.29E-25 692040000 650460 712170 676290 36330.7 896890 539850 617870 649660 704400 397040 TRUE FALSE FALSE 604866.113 655735.0555 938167.5997 84579.70565 784393.693 473248.7958 463272.3908 501746.6 765457.9592 297618.5997 2.032353198 2.203273102 3.152247879 0.284188239 2.635566775 1.590118347 1.556597576 1.685871113 2.571942614 1 18.18310517 -5.208078114 24.99987495 1.685033903 2.43668866 0.231023945 0.698374337 525.6385365 246261.7818 0.180679078 0.312945103 6.19E-06 5.208078114 0.751654757 SQST(ph)TFNPDDMSEPEFK ddPTM_HeLa_A486_30min_R1 1 SQSTTFNPDDMSEPEFK 17 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 SQS(0.019)T(0.801)T(0.18)FNPDDMSEPEFK 331.4 7.80E-91 240430000 634620 583980 277800 311610 491570 684470 740530 772200 445600 769600 TRUE FALSE FALSE 590136.4152 537703.298 385371.5997 725443.8279 429912.7069 600027.0506 555241.5615 596386.917 484224.9668 576887.1507 1.022966822 0.932077092 0.668019038 1.257514276 0.745228432 1.040111658 0.962478642 1.0338017 0.839375545 1 19.1379296 -5.229244668 24.99953206 0.975714837 0.880126731 0.096109689 0.150831426 1809.863976 1405376.287 0.038857088 0.06729554 5.90E-06 5.229244668 -0.095588105 SQT(ph)LPIIR ddPTM_HeLa_A485_30min_R1 2 SQTLPIIR 8 0 Q96BY6;H7C0I3;A0A2R8YD85;Q96BY6-3 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 S(0.005)QT(0.995)LPIIR;S(0.011)QT(0.989)LPIIR ; 106.58 0.0066889 160857000 250740 221338 199336 216188 309750 229658 357190 372910 194190 280100 TRUE FALSE FALSE 306516.248 247221.5537 273078.6815 227997.803 278910.2024 241682.5378 280873.4385 281453.2378 233162.1518 210276.2249 1.457683807 1.175699031 1.298666464 1.084277612 1.326399133 1.149357413 1.335735596 1.338492918 1.108837444 1 17.68192621 -7.965647078 4.876196811 1.00076919 1.26160916 0.427089415 0.103506788 0.149775376 8.55480898 0.094748783 0.024727551 1.08E-08 7.965647078 0.26083997 SQT(ph)LPIIR ddPTM_HeLa_A486_30min_R1 1 SQTLPIIR 8 0 Q96BY6;H7C0I3;A0A2R8YD85;Q96BY6-3 Q96BY6 DOCK10 Dedicator of cytokinesis protein 10 1 0 S(0.007)QT(0.993)LPIIR 85.813 0.022923 43148000 60989 90400 74079 36630 102680 92889 110050 109860 71658 80891 TRUE FALSE FALSE 56713.98605 83236.37477 102764.3727 85276.49118 89800.91695 81429.29961 82514.32601 84847.27623 77869.37314 60635.36709 0.935328485 1.372736387 1.694792621 1.406382039 1.480998982 1.342934058 1.360828341 1.399303415 1.284223661 1 15.88787191 -8.187571835 2.27931055 1.000037775 1.388467898 0.285609692 0.17651994 0.955712906 8.683368822 0.1729939 0.04729606 6.49E-09 8.187571835 0.388430123 SQT(ph)PERPAK ddPTM_HeLa_A486_30min_R1 1 SQTPERPAK 9 1 A8CG34-2;A8CG34;Q96HA1-2;Q96HA1-3;Q96HA1;C9JFL1;A6NF01 A8CG34-2 POM121C;POM121;POM121B Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B 1 0 S(0.078)QT(0.922)PERPAK 74.46 0.014144 264700000 424010 405080 227720 157540 393450 421240 471450 424060 372860 545330 TRUE FALSE FALSE 394289.0886 372979.9855 315899.2826 366761.0816 344099.8322 369271.6917 353488.2235 327510.7952 405179.805 408775.8185 0.964560697 0.912431628 0.772793468 0.897218145 0.841781281 0.903359922 0.864748372 0.801199044 0.991202969 1 18.64095033 -7.785576058 23.24327277 0.995602203 0.868887042 0.478143451 0.052580221 102.3867707 98590.57239 0.050480664 0.013073268 1.64E-08 7.785576058 -0.126715161 SQT(ph)PERPAKK ddPTM_HeLa_A485_30min_R1 1 SQTPERPAKK 10 2 A8CG34-2;A8CG34;Q96HA1-2;Q96HA1-3;Q96HA1;C9JFL1;A6NF01 A8CG34-2 POM121C;POM121;POM121B Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B 1 0 S(0.01)QT(0.99)PERPAKK 80.469 0.03596 225410000 307970 220770 97845 345350 170780 255600 332850 467330 220470 599590 TRUE FALSE FALSE 376476.864 246587.1311 134041.9372 364215.596 153776.5436 268982.8208 261733.8784 352716.5848 264716.3067 450123.2476 0.836386181 0.547821363 0.297789412 0.809146379 0.341632085 0.597575935 0.581471585 0.783600018 0.588097389 1 18.77996055 -8.615902036 0.60218013 1.012573222 0.560036504 0.338900386 0.170537564 2.369306709 1.37610137 0.246346416 0.070460714 2.42E-09 8.615902036 -0.452536718 SQT(ph)PERPAKK ddPTM_HeLa_A486_30min_R1 2 SQTPERPAKK 10 2 A8CG34-2;A8CG34;Q96HA1-2;Q96HA1-3;Q96HA1;C9JFL1;A6NF01 A8CG34-2 POM121C;POM121;POM121B Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B 1 0 S(0.005)QT(0.995)PERPAKK;S(0.005)QT(0.995)PERPAKK ; 105.65 0.0009376 322250000 569910 212314 200042 224595 225965 627230 516020 357260 451140 663880 TRUE FALSE FALSE 529962.252 195489.4654 277503.6197 522868.5104 197622.3627 549848.7398 386906.3381 275919.6969 490245.1784 497640.1269 1.064950802 0.392833003 0.557639155 1.05069604 0.397119026 1.104912386 0.777482195 0.554456287 0.985139968 1 18.9247433 -6.269400651 24.89261994 0.849869406 0.688382346 0.115010541 0.257049733 1563.481272 4888545.516 0.087911953 0.078917354 5.38E-07 6.269400651 -0.16148706 SQT(ph)PPGVATPPIPK ddPTM_HeLa_A485_30min_R1 3 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 S(0.076)QT(0.923)PPGVAT(0.001)PPIPK;S(0.048)QT(0.952)PPGVATPPIPK;S(0.153)QT(0.847)PPGVATPPIPK ;; 124.62 0.0001463 1958720000 1585060 1673100 1239590 2064900 2275470 1910420 2703550 2963780 1434460 2769550 TRUE FALSE FALSE 1937651.129 1868754.491 1698165.925 2177700.258 2048916.217 2010446.637 2125914.457 2236908.308 1722342.964 2079152.155 0.931942919 0.898806029 0.816758851 1.047398216 0.985457564 0.966955031 1.022491044 1.075875233 0.828387168 1 20.98756391 -5.265586989 24.97004682 0.992936318 0.884132943 0.344330257 0.067539685 375.6354592 2261456.691 0.018346717 0.02835756 5.43E-06 5.265586989 -0.108803375 SQT(ph)PPGVATPPIPK ddPTM_HeLa_A486_30min_R1 4 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 S(0.125)QT(0.875)PPGVATPPIPK;S(0.014)QT(0.986)PPGVATPPIPK;S(0.002)QT(0.998)PPGVATPPIPK;S(0.233)QT(0.767)PPGVATPPIPK ;;; 156.57 9.61E-08 2264150000 2511680 2293800 1282980 1037590 2259540 2549080 3077110 2970490 1943140 3227850 TRUE FALSE FALSE 2335624.202 2112030.934 1779784.215 2415561.957 1976127.424 2234600.427 2307184.532 2294174.272 2111572.94 2419575.35 0.965303355 0.872893226 0.735577098 0.998341282 0.816724895 0.923550666 0.953549362 0.948172278 0.872703939 1 21.20632244 -6.501864928 23.1281671 0.939182092 0.875680324 0.151897024 0.073888989 585.0362703 643903.1054 0.025687489 0.022373572 3.15E-07 6.501864928 -0.063501768 SQT(ph)PPRR ddPTM_HeLa_A485_30min_R1 3 SQTPPRR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.166)QT(0.834)PPRR;S(0.022)QT(0.978)PPRR;S(0.011)QT(0.989)PPRR ;; 78.06 0.012416 8961800000 500438 583369 328283 686958 380878 543029 638575 704740 549535 882370 TRUE FALSE FALSE 611758.7066 651588.9299 449728.5427 724484.7761 342956.449 571461.1588 502138.2346 531901.41 659821.6339 662411.3978 0.923532881 0.983662014 0.678926335 1.093708198 0.517739354 0.862698258 0.758045885 0.802977442 0.996090399 1 19.33736797 -9.955891634 7.216363976 1.000000005 0.839702935 0.075609579 0.159619069 1.14E-08 1.67E-09 0.146736351 0.035588792 1.11E-10 9.955891634 -0.16029707 SQT(ph)PPRR ddPTM_HeLa_A486_30min_R1 2 SQTPPRR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.009)QT(0.991)PPRR;S(0.011)QT(0.989)PPRR ; 68.371 0.019472 2248460000 298330 148335 260365 128028 178342 470030 284630 225999 386000 365560 TRUE FALSE FALSE 277418.6076 136580.3944 361185.3008 298055.6542 155972.6834 412042.4775 213412.5635 174543.9612 419458.7908 274021.3966 1.012397612 0.49842967 1.318091599 1.087709419 0.569198921 1.50368724 0.778817151 0.636972015 1.530751963 1 18.06392902 -4.757547779 24.99947833 1.03043105 0.755413779 0.10912792 0.33528859 226.952917 1457878.629 0.083011297 0.203097686 1.75E-05 4.757547779 -0.275017271 SQT(ph)PSPSTLNIDHMEQK ddPTM_HeLa_A486_30min_R1 1 SQTPSPSTLNIDHMEQK 17 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 S(0.18)QT(0.703)PS(0.112)PS(0.003)T(0.003)LNIDHMEQK 173.65 2.93E-12 158170000 203050 224480 142160 83927 240400 220580 269510 263130 184460 248240 TRUE FALSE FALSE 188817.2436 206691.3873 197208.1592 195386.2974 210246.7904 193367.0823 202075.7474 203221.0431 200449.1413 186079.0882 1.014715008 1.110771711 1.059808284 1.050017491 1.129878657 1.03916611 1.08596699 1.092121877 1.077225513 1 17.50555641 -4.235813979 23.50266934 1.074744664 1.014714835 0.185267591 0.035297161 5566.959464 5105634.187 0.008089241 0.531909532 5.81E-05 4.235813979 -0.06002983 SQTGDVS(ph)PK ddPTM_HeLa_A485_30min_R1 1 SQTGDVSPK 9 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 S(0.002)QT(0.002)GDVS(0.997)PK 68.893 0.015685 368910000 552540 396420 187670 1048000 183310 337600 601400 391800 268640 1188300 TRUE FALSE FALSE 675450.6168 442777.8706 257096.9426 1105249.586 165059.0128 355276.214 472905.977 295710.4357 322553.5839 892078.679 0.757164847 0.496343967 0.288199851 1.23895976 0.185027416 0.398256591 0.530116892 0.331484703 0.361575264 1 19.76681143 -9.786131659 7.293844057 1.000000001 0.506758149 0.209868125 0.285364089 3.30E-09 0 0.271167008 0.06576766 1.64E-10 9.786131659 -0.493241852 SQTGDVS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SQTGDVSPK 9 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2;H0YBM4 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 SQTGDVS(1)PK;SQT(0.001)GDVS(0.999)PK ; 119.21 0.00050023 732270000 1117840 1025370 524250 832070 926830 1261910 1670750 1532710 861110 2192000 TRUE FALSE FALSE 1039485.189 944115.9469 727253.6399 1937101.01 810578.3391 1106228.374 1252710.679 1183745.392 935751.7081 1643108.932 0.632633155 0.574591208 0.442608293 1.178924277 0.493319903 0.673253217 0.762402695 0.720430258 0.569500713 1 20.6479967 -11.43427015 2.164746275 3.821966032 0.676132973 0.205537263 0.193323545 10757526.27 756503.9357 149277266.8 0.049177641 3.68E-12 11.43427015 -3.145833059 SQTTTERDS(ph)DT(ph)DVEEEELPVENR ddPTM_HeLa_A485_30min_R1 4 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 S(0.002)QT(0.017)T(0.014)T(0.012)ERDS(0.955)DT(1)DVEEEELPVENR;SQT(0.007)T(0.006)T(0.042)ERDS(0.945)DT(1)DVEEEELPVENR;SQTTTERDS(1)DT(1)DVEEEELPVENR;SQTTT(0.002)ERDS(0.997)DT(1)DVEEEELPVENR ;;; 226.05 2.68E-38 4071990000 622799 871150 817530 704586 1148760 785757 998230 1213780 841040 1077420 TRUE FALSE FALSE 761338.4889 973023.4145 1119968.367 743075.7491 1034385.421 826898.0215 784950.0057 916098.5519 1009829.014 808839.0224 0.941273193 1.202987724 1.38466164 0.918694238 1.278852024 1.022327062 0.970465054 1.132609242 1.248491956 1 19.62549308 SQTTTERDS(ph)DT(ph)DVEEEELPVENR ddPTM_HeLa_A486_30min_R1 4 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 SQTTTERDS(1)DT(1)DVEEEELPVENR;SQTTT(0.001)ERDS(0.999)DT(1)DVEEEELPVENR;SQTTT(0.001)ERDS(0.998)DT(1)DVEEEELPVENR;SQTTTERDS(1)DT(1)DVEEEELPVENR ;;; 292.69 4.52E-89 3960900000 1655310 1646010 1356620 587236 1914160 1555690 1863200 1785020 1574890 1683350 TRUE FALSE FALSE 1539281.317 1515574.173 1881939.596 1367115.085 1674068.204 1363764.785 1397007.653 1378609.913 1711402.733 1261828.203 1.219881845 1.201093912 1.491438843 1.08343995 1.326700576 1.080784834 1.107129837 1.092549611 1.356288224 1 20.26708407 -6.264637239 24.98780074 1.13187106 1.263535449 0.219673101 0.12910845 470.5837115 3677081.843 0.043261887 0.039772883 5.44E-07 6.264637239 0.13166439 SQTTTERDS(ph)DTDVEEEELPVENR ddPTM_HeLa_A485_30min_R1 1 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.002)QT(0.018)T(0.013)T(0.009)ERDS(0.951)DT(0.007)DVEEEELPVENR 210.21 1.69E-29 551560000 66693 108210 119520 96529 118610 98570 103340 135120 122500 142950 TRUE FALSE FALSE 81528.62776 120864.2182 163735.4216 101802.1348 106800.7719 103730.9728 81260.56479 101981.6081 147084.6264 107315.1958 0.759711867 1.126254463 1.52574312 0.948627397 0.995206421 0.966600974 0.757213964 0.950299791 1.370585268 1 16.71149485 SQVIAEKAPEPDLMS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 SQVIAEKAPEPDLMSPTR 18 1 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 SQVIAEKAPEPDLMS(0.822)PT(0.178)R 57.068 0.014271 441010000 78766 90769 83681 63456 137890 91367 146930 165760 69545 101760 TRUE FALSE FALSE 96287.22496 101383.645 114638.0842 66922.4406 124161.1874 96150.83484 115537.2052 125107.1001 83502.0436 76393.10475 1.260417747 1.327130836 1.500633919 0.876027239 1.625293118 1.258632375 1.512403581 1.637675292 1.093057336 1 16.22115481 SQVLDYLSYAVFQLGDLHR ddPTM_HeLa_A485_30min_R1 2 SQVLDYLSYAVFQLGDLHR 19 0 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 ; ; 166.29 8.49E-15 11050700 9162.04 7998.79 9219.47 8601.21 9247 9937.99 14218.2 16541.24 6604.31 11745.43 FALSE FALSE TRUE 11200.10419 8934.17891 12630.13561 9071.072323 8326.336212 10458.32779 11180.36542 12484.47495 7929.734439 8817.51046 1.270211614 1.01323145 1.432392472 1.028756627 0.944295587 1.186086236 1.267973026 1.415872996 0.899316703 1 13.10615567 -3.902681324 17.70929267 1.150664415 7.596950778 0.041221663 0.180813486 566.467342 103268.3077 0.043058966 264.4057399 0.000125118 3.902681324 6.446286363 SQVLDYLSYAVFQLGDLHR ddPTM_HeLa_A486_30min_R1 1 SQVLDYLSYAVFQLGDLHR 19 0 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 212.76 5.07E-29 7203600 5016.8 6934.2 7525.7 3093.9 8676.9 7202.6 10034 8785.9 7656.2 8607.9 FALSE FALSE TRUE 4665.148227 6384.708738 10439.85259 7202.755557 7588.562293 6314.016443 7523.387071 6785.542365 8319.84558 6452.425812 0.723006876 0.989505176 1.617973285 1.116286458 1.176078968 0.978549251 1.165978082 1.051626561 1.289413598 1 12.65562593 -4.521686584 24.99955703 1.176123877 0.789631296 0.390206905 0.173707416 36.82081558 772101.2772 0.044233872 0.120544546 3.01E-05 4.521686584 -0.386492581 SRADLES(ph)PQRK ddPTM_HeLa_A485_30min_R1 4 SRADLESPQRK 11 2 A0A087X1K6;Q9Y2Y9 A0A087X1K6 KLF13 Krueppel-like factor 13 1 0 S(0.006)RADLES(0.994)PQRK;SRADLES(1)PQRK;SRADLES(1)PQRK;S(0.002)RADLES(0.998)PQRK ;;; 109.07 0.0002672 1878070000 716500 890480 708175 856910 1161490 1024730 1394650 1565770 815253 1264170 TRUE FALSE FALSE 875882.9531 994613.8899 970158.4021 903720.8235 1045847.977 1078383.278 1096671.634 1181762.452 978866.7992 949035.6843 0.922918882 1.048025808 1.022257032 0.952251679 1.102011225 1.13629371 1.155564171 1.245224465 1.03143308 1 19.85610281 -5.879105462 5.24514552 1.13027429 0.993838545 0.413002391 0.071620651 0.19158085 8.031624802 0.021823105 0.024957767 1.32E-06 5.879105462 -0.136435746 SRADLES(ph)PQRK ddPTM_HeLa_A486_30min_R1 4 SRADLESPQRK 11 2 A0A087X1K6;Q9Y2Y9 A0A087X1K6 KLF13 Krueppel-like factor 13 1 0 SRADLES(1)PQRK;S(0.02)RADLES(0.98)PQRK;SRADLES(1)PQRK;SRADLES(1)PQRK ;;; 101.3 0.00070717 1348900000 1265620 1184830 710970 550070 1200770 1153000 1496150 1422730 923790 1553350 TRUE FALSE FALSE 1176906.574 1090939.756 986276.6244 1280590.759 1050158.23 1010754.583 1121797.445 1098805.437 1003864.861 1164381.049 1.010757238 0.936926753 0.847039399 1.099803848 0.901902543 0.868061691 0.96342812 0.943682 0.862144623 1 20.15113183 SRADLT(ph)AEMISAPLGDFR ddPTM_HeLa_A485_30min_R1 1 SRADLTAEMISAPLGDFR 18 1 Q9H3Q1;Q9H3Q1-2;J3KRZ9;J3QQS6;J3QR93 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(0.362)RADLT(0.638)AEMISAPLGDFR 99.366 0.00043509 22793000 22919 31634 27739 23001 31514 27505 31634 40881 27106 30832 TRUE FALSE FALSE 28017.25248 35333.32112 38000.81042 24257.48639 28376.35551 28945.11927 24875.13747 30854.87065 32545.92557 23146.14982 1.210449803 1.526531254 1.641776741 1.048013885 1.225964393 1.250537108 1.074698715 1.333045491 1.40610537 1 14.49848461 -5.264011434 24.99997885 1.204139194 1.466280462 0.38189632 0.155793939 242.0999075 2353179.738 0.043608213 0.068158201 5.44E-06 5.264011434 0.262141269 SRADLT(ph)AEMISAPLGDFR ddPTM_HeLa_A486_30min_R1 1 SRADLTAEMISAPLGDFR 18 1 Q9H3Q1;Q9H3Q1-2;J3KRZ9;J3QQS6;J3QR93 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(0.408)RADLT(0.592)AEMISAPLGDFR 115.66 8.05E-05 29258000 41451 39183 29932 16113 38328 33082 39843 43645 31069 37160 TRUE FALSE FALSE 38545.49895 36077.99638 41522.47201 37511.87831 33520.54485 29000.67919 29873.85998 33707.98626 33762.08594 27854.89413 1.383796283 1.295212116 1.490670609 1.346688956 1.203398752 1.041134066 1.072481548 1.210127962 1.212070158 1 14.76564321 -5.836174736 3.107674473 1.118439346 1.385061847 0.733985218 0.077206686 0.13857257 2.698800306 0.025876992 0.030818599 1.46E-06 5.836174736 0.266622501 SRAPGPRDT(ph)DDDEEEPDPYGFIVQTAEIAEIAR ddPTM_HeLa_A486_30min_R1 1 SRAPGPRDTDDDEEEPDPYGFIVQTAEIAEIAR 33 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.14)RAPGPRDT(0.86)DDDEEEPDPYGFIVQTAEIAEIAR 137.44 8.79E-07 23103000 10162 9409.4 8546.6 4419.1 12144 10199 10824 11870 9525.1 11435 TRUE FALSE FALSE 9449.696277 8663.764876 11856.07241 10287.88813 10620.78628 8940.751076 8115.720715 9167.46012 10350.74334 8571.601571 1.102442315 1.010752169 1.38318053 1.200229391 1.239066724 1.043066573 0.946814974 1.069515428 1.20756235 1 13.06534908 -6.272733955 24.25696221 1.05107551 1.188954193 0.274667771 0.108615749 721.9553267 1550513.146 0.040166319 0.035778229 5.34E-07 6.272733955 0.137878683 SRAS(ph)PVSR ddPTM_HeLa_A485_30min_R1 3 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.225)RAS(0.766)PVS(0.009)R;S(0.2)RAS(0.8)PVSR;S(0.289)RAS(0.704)PVS(0.008)R ;; 76.522 0.0057382 11920400000 187767 290270 189426 264410 185974 240770 261460 362680 240970 347010 TRUE FALSE FALSE 229535.1214 324214.5515 259502.5601 278854.0488 167457.7756 253376.3449 205596.9351 273732.1613 289330.4687 260506.7932 0.881109926 1.244553155 0.996145079 1.070429087 0.642815389 0.972628551 0.789219093 1.050767843 1.110644621 1 17.99096147 -2.895568843 8.736815711 0.973374901 1.130644681 0 0.161466255 0 192925274.8 0.038778388 0 0.001271836 2.895568843 0.15726978 SRAS(ph)PVSR ddPTM_HeLa_A486_30min_R1 1 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.256)RAS(0.736)PVS(0.007)R 51.286 0.025424 2243700000 159030 85776 137480 81080 96395 207350 122650 94150 182580 173010 TRUE FALSE FALSE 147882.8182 78978.79737 190715.9378 188758.3376 84304.24025 181769.2652 91961.67274 72714.10028 198406.1814 129687.1699 1.140304152 0.608994686 1.470584469 1.455489681 0.650058447 1.401597902 0.70910386 0.560688465 1.529882883 1 16.98467623 -6.778828324 24.9973024 0.913309648 1.107555349 0.045139697 0.367691155 818.4048815 1176478.889 0.152896268 0.103353224 1.66E-07 6.778828324 0.194245701 SRASPVSR ddPTM_HeLa_A486_30min_R1 1 SRASPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 66.692 0.026025 19752000 28798 12829 25525 8117 16633 35813 22240 17563 30769 25461 FALSE FALSE TRUE 26779.40891 11812.38332 35408.96358 18896.78621 14546.73404 31394.75618 16675.31677 13564.2883 33436.08169 19085.39988 1.403135857 0.618922495 1.855290631 0.990117385 0.762191735 1.644961928 0.87372111 0.710715436 1.751919368 1 14.22018179 SRDAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_A485_30min_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 0 S(0.056)RDAT(0.946)PPVS(0.999)PINMEDQER;S(0.004)RDAT(0.996)PPVS(1)PINMEDQER ; 89.08 0.00069953 2340900000 452830 637320 562350 422320 620620 580520 650730 684280 482330 557580 TRUE FALSE FALSE 553560.4713 711849.0301 770386.6663 445390.2722 558828.8937 610915.1295 511696.2195 516459.2571 579129.2068 418585.5675 1.322454748 1.700605767 1.840452051 1.064036381 1.335040998 1.459474901 1.222441143 1.233820029 1.383538401 1 18.67516304 -1.341794638 0.059036258 0.432573018 3.20875175 0.33215013 0.202040594 382.5199137 1.798700039 18.21391273 93.15242928 0.045520326 1.341794638 2.776178732 SRDAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_A486_30min_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 0 S(0.018)RDAT(0.982)PPVS(1)PINMEDQER;S(0.112)RDAT(0.889)PPVS(0.998)PINMEDQER ; 89.08 0.00069953 2046810000 628930 561580 480600 179804 644500 477240 527810 559160 465150 599510 TRUE FALSE FALSE 584845.2548 517078.3556 666701.1909 418592.7988 563660.8003 418362.981 395746.3554 431851.4744 505469.5765 449388.7938 1.301423762 1.150625834 1.483573244 0.931471377 1.254283169 0.930959977 0.880632452 0.960975174 1.12479346 1 18.77760462 -5.642657836 1.284592972 0.982738631 1.286408884 0.427552246 0.1413597 0.421040315 1.444161499 0.052782653 0.085403907 2.28E-06 5.642657836 0.303670253 SRDAT(ph)PPVSPINMEDQER ddPTM_HeLa_A485_30min_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 0 S(0.022)RDAT(0.978)PPVSPINMEDQER;S(0.074)RDAT(0.926)PPVSPINMEDQER ; 111.58 0.00011628 677820000 86328 98963 94169 125154 102113 97383 144383 122883 80221 175672 TRUE FALSE FALSE 105531.3658 110535.862 129006.0318 131990.8461 91946.27118 102481.8233 113534.3925 92745.75158 96320.61887 131880.2034 0.800206271 0.83815356 0.978206194 1.000838964 0.6971954 0.777082691 0.860890335 0.703257572 0.7303645 1 17.00886849 -5.76449739 24.99996653 0.782380113 0.904898189 0.218402062 0.09988331 113.9117354 931256.9658 0.030607136 0.036215502 1.72E-06 5.76449739 0.122518076 SRDAT(ph)PPVSPINMEDQER ddPTM_HeLa_A486_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 0 S(0.068)RDAT(0.932)PPVSPINMEDQER 94.988 0.0006571 354400000 62122 48243 48405 13491 58264 49904 73577 67500 32506 53147 TRUE FALSE FALSE 57767.5686 44420.04898 67148.71233 31407.7298 50955.98583 43747.35187 55167.25638 52131.72351 35323.64625 39838.64527 1.450038479 1.114998984 1.685516962 0.788373439 1.279059202 1.098113442 1.384767379 1.308571694 0.886667858 1 15.28188097 -1.000000005 0.085844409 0.840224318 2.244732364 0.159933608 0.238240085 363.3805953 2.261086877 5.133060922 60.22973049 0.099999999 1.000000005 1.404508046 SRDS(ph)GDENEPIQER ddPTM_HeLa_A485_30min_R1 5 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 SRDS(1)GDENEPIQER;SRDS(1)GDENEPIQER;SRDS(1)GDENEPIQER;SRDS(1)GDENEPIQER;SRDS(1)GDENEPIQER ;;;; 251.97 5.23E-37 9209400000 2015830 2528340 2329710 2197940 3004070 2353240 2715750 2931920 2067690 2810450 TRUE FALSE FALSE 2464244.429 2824007.369 3191566.676 2318007.897 2704974.243 2476452.008 2135507.827 2212862.023 2482656.417 2109856.537 1.167967767 1.338483124 1.512693692 1.098656641 1.282065484 1.173753743 1.012157836 1.048821085 1.176694421 1 21.00871347 -6.206139829 1.150207037 1.061085909 1.31457864 0.455765528 0.112074824 0.440158274 1.209087948 0.057652027 0.054689785 6.22E-07 6.206139829 0.253492731 SRDS(ph)GDENEPIQER ddPTM_HeLa_A486_30min_R1 4 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 SRDS(1)GDENEPIQER;S(0.001)RDS(0.999)GDENEPIQER;S(0.005)RDS(0.995)GDENEPIQER;S(0.001)RDS(0.999)GDENEPIQER ;;; 249.7 1.50E-35 6446900000 1915410 2252910 1935390 863760 2610380 2075360 2377350 2462240 1729890 2053550 TRUE FALSE FALSE 1781149.65 2074381.207 2684824.84 2010876.932 2282961.8 1819323.184 1782511.885 1901641.702 1879838.258 1539327.714 1.157095812 1.347589073 1.744154163 1.306334521 1.483090169 1.181894646 1.157980766 1.235371575 1.221207311 1 20.55386897 -6.273155823 23.16167808 1.173919646 1.417381605 0.396232965 0.152521221 311.7801603 616340.363 0.05431861 0.048376488 5.33E-07 6.273155823 0.243461959 SREDLS(ph)AQPVQTK ddPTM_HeLa_A485_30min_R1 1 SREDLSAQPVQTK 13 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(0.146)REDLS(0.853)AQPVQT(0.001)K 208.81 1.13E-20 821590000 770560 545370 426730 1022800 792940 595150 931190 721590 527400 1348200 TRUE FALSE FALSE 941968.4136 609146.2774 584595.1847 1078672.974 713992.1094 626311.1337 732233.6494 544618.9211 633244.3424 1012118.552 0.930689801 0.601852694 0.577595563 1.065757536 0.70544316 0.618812028 0.723466286 0.538097953 0.625662222 1 19.94894686 -5.985867043 24.99914265 0.672440761 0.779895936 0.047385492 0.176094123 677.0082396 1197522.117 0.054157027 0.061383414 1.03E-06 5.985867043 0.107455176 SREDLT(ph)AVVSVSTK ddPTM_HeLa_A486_30min_R1 1 SREDLTAVVSVSTK 14 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IT83;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.413)REDLT(0.587)AVVSVSTK 120.9 8.51E-05 242430000 575260 591290 338380 461710 521170 722470 832470 675030 565480 945790 TRUE FALSE FALSE 534937.2446 544434.027 469409.7981 1074884.214 455799.9989 633338.9969 624177.201 521340.4048 614496.2617 708958.0279 0.754540077 0.767935485 0.662112254 1.516146473 0.64291535 0.893337789 0.880414886 0.735361452 0.86675972 1 19.43534069 SRENLS(ph)AVMLYNPGLEFER ddPTM_HeLa_A486_30min_R1 1 SRENLSAVMLYNPGLEFER 19 1 A0A1B0GTU3;Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2 A0A1B0GTU3 KIF16B Kinesin-like protein KIF16B 1 0 S(0.394)RENLS(0.606)AVMLYNPGLEFER 140.41 1.83E-07 610250000 40957 47865 40931 19167 45757 40335 54919 52773 42439 57726 TRUE FALSE FALSE 38086.1258 44072.00308 56780.57937 44621.74465 40017.73039 35358.8778 41177.68533 40757.73993 46117.64669 43271.03387 0.880176007 1.018510517 1.312207597 1.031215126 0.924815675 0.817148902 0.951622405 0.941917405 1.065785644 1 15.40111397 -5.618578776 5.298346504 0.941664749 1.081185992 0.180241995 0.115223922 0.324432255 14.44550671 0.036150234 0.047023175 2.41E-06 5.618578776 0.139521244 SREPQAKPQLDLS(ph)IDSLDLSCEEGTPLSITSK ddPTM_HeLa_A486_30min_R1 2 SREPQAKPQLDLSIDSLDLSCEEGTPLSITSK 32 2 A0A087WY61;Q14980-2;Q14980;Q14980-5 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 S(0.008)REPQAKPQLDLS(0.939)IDS(0.05)LDLS(0.003)CEEGTPLSITSK;SREPQAKPQLDLS(0.966)IDS(0.034)LDLSCEEGTPLSITSK ; 209.99 8.04E-30 475011000 127301 130731 73066 53689 135476 143447 180761 169405 116602 183989 TRUE FALSE FALSE 118377.8573 120371.3994 101359.112 124990.7053 118483.3368 125749.9676 135532.6859 130835.1796 126709.1552 137916.9568 0.858327069 0.872781725 0.734928571 0.90627511 0.859091873 0.911780324 0.982712271 0.948651874 0.918735144 1 17.07344032 -6.231342289 1.349936704 0.959785284 0.834152686 0.59272215 0.045634561 0.309410635 1.14201978 0.021298444 0.019711791 5.87E-07 6.231342289 -0.125632597 SREPQAKPQLDLSIDSLDLS(ph)CEEGTPLSITSK ddPTM_HeLa_A486_30min_R1 1 SREPQAKPQLDLSIDSLDLSCEEGTPLSITSK 32 2 A0A087WY61;Q14980-2;Q14980;Q14980-5 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 SREPQAKPQLDLSIDSLDLS(0.999)CEEGTPLSITSK 138.06 3.26E-07 315390000 193350 214050 119090 128790 227230 239840 304050 306810 216340 334520 TRUE FALSE FALSE 179797.1635 197087.8984 165204.8373 299829.6287 198728.6946 210250.9793 227973.4741 236956.0606 235092.5254 250754.0146 0.717026061 0.785981029 0.658832273 1.195712177 0.792524478 0.838475027 0.909151841 0.944974145 0.937542419 1 17.93591327 -5.191834152 24.9999964 0.930849408 0.727149701 0.483838103 0.105615966 154.565292 55514.28172 0.028120408 0.048705971 6.43E-06 5.191834152 -0.203699706 SRERPS(ph)QPEGLR ddPTM_HeLa_A485_30min_R1 1 SRERPSQPEGLR 12 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.109)RERPS(0.891)QPEGLR 97.45 0.00096385 406670000 160890 181200 172670 183230 239650 167780 231050 175530 148840 234470 TRUE FALSE FALSE 196679.4254 202389.7638 236547.8184 193239.3909 215789.6045 176564.7014 181684.28 132480.9923 178710.8228 176020.9441 1.117363769 1.149805012 1.343861775 1.097820444 1.225931412 1.003089162 1.032174216 0.752643346 1.015281583 1 17.42538757 -6.513000096 1.803683186 0.919875952 1.191443789 0.568341994 0.098128333 0.238072434 1.558359401 0.044012493 0.033458541 3.07E-07 6.513000096 0.271567838 SRERS(ph)PS(ph)PLRGNVVPS(ph)PLPTR ddPTM_HeLa_A486_30min_R1 2 SRERSPSPLRGNVVPSPLPTR 21 3 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 3 0 S(0.423)RERS(0.617)PS(0.96)PLRGNVVPS(0.999)PLPT(0.001)R;S(0.593)RERS(0.704)PS(0.704)PLRGNVVPS(1)PLPTR ; 76.859 0.0029718 356580000 205388 205200 282550 163877 539570 221890 355510 428460 191167 264420 TRUE FALSE FALSE 190991.3618 188939.2047 391960.927 381513.9379 471892.0993 194515.4678 266557.6378 330909.0112 207737.5095 198207.5109 0.963592958 0.953239379 1.977528123 1.924820791 2.380798271 0.98137284 1.344841255 1.66950793 1.048080915 1 17.59665211 SRES(ph)LNVDVVK ddPTM_HeLa_A485_30min_R1 2 SRESLNVDVVK 11 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0;H0YGB8 Q07866-4 KLC1 Kinesin light chain 1 1 0 S(0.252)RES(0.748)LNVDVVK;S(0.383)RES(0.617)LNVDVVK ; 132.08 1.76E-05 138250000 250191 237042 181729 284592 301428 248022 341599 340839 224497 379564 TRUE FALSE FALSE 305845.1248 264761.9999 248958.1195 300138.5403 271416.7699 261008.0484 268613.583 257247.7008 269551.4887 284945.6802 1.073345364 0.929166569 0.873703786 1.053318444 0.95252109 0.915992298 0.942683472 0.902795581 0.945974996 1 18.1203274 -5.995449319 24.99764436 0.935351742 0.974832016 0.089690512 0.058273448 338.7284839 1860668.468 0.018136204 0.02048144 1.01E-06 5.995449319 0.039480274 SRES(ph)LNVDVVK ddPTM_HeLa_A486_30min_R1 1 SRESLNVDVVK 11 1 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0;H0YGB8 Q07866-4 KLC1 Kinesin light chain 1 1 0 S(0.454)RES(0.546)LNVDVVK 105.99 0.00034737 151070000 180470 196630 117280 75867 184060 190920 211020 225720 149430 220920 TRUE FALSE FALSE 167819.9849 181048.3227 162693.9569 176622.2101 160973.4785 167366.2315 158220.5641 174328.4834 162382.7127 165600.1941 1.013404519 1.093285692 0.982450279 1.06655799 0.972060929 1.010664465 0.955437069 1.052707 0.980570788 1 17.33734484 -5.764074965 24.99927852 0.996656466 1.038773671 0.253221035 0.036703196 99.08490975 939850.6045 0.010560098 0.012534129 1.72E-06 5.764074965 0.042117205 SRES(ph)VDS(ph)RDS(ph)S(ph)HS(ph)RER ddPTM_HeLa_A485_30min_R1 1 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 5 0 S(0.021)RES(0.979)VDS(1)RDS(1)S(1)HS(1)RER 98.973 0.00018453 285330000 143320 213750 210860 256630 377050 218730 322740 342600 212130 423400 TRUE FALSE FALSE 175201.0396 238746.2031 288865.8886 270649.0471 339509.5781 230182.3646 253783.9625 258576.8128 254702.5452 317854.1721 0.551199433 0.75111867 0.908800054 0.851488106 1.068130004 0.724176005 0.798428917 0.813507688 0.801318868 1 18.2780055 -4.37267526 2.682422306 0.862315966 0.525844196 0.504676555 0.096862321 0.306665043 3.370275541 0.025481823 0.202668137 4.24E-05 4.37267526 -0.33647177 SRES(ph)VDS(ph)RDS(ph)S(ph)HS(ph)RER ddPTM_HeLa_A486_30min_R1 1 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 5 0 S(0.225)RES(0.804)VDS(0.993)RDS(0.992)S(0.992)HS(0.994)RER 45.737 0.020411 131100000 122980 117860 123060 94337 198540 174490 177570 173170 131520 166480 TRUE FALSE FALSE 114359.7371 108520.3444 170712.1277 219621.3035 173637.2619 152963.1979 133140.1079 133742.9713 142920.2595 124792.3244 0.916400409 0.869607525 1.367969773 1.759894325 1.39140979 1.225742037 1.066893405 1.071724338 1.145264824 1 16.92916968 -6.676944883 4.412424072 1.076640879 1.275726346 0.125764505 0.236969192 0.535060691 19.06566211 0.109327328 0.081999825 2.10E-07 6.676944883 0.199085467 SRES(ph)VDS(ph)RDS(ph)S(ph)HSR ddPTM_HeLa_A486_30min_R1 1 SRESVDSRDSSHSR 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.012)RES(0.987)VDS(0.994)RDS(0.904)S(0.623)HS(0.478)R 54.281 0.016974 154530000 36145 41243 26447 14774 29592 38575 28847 29235 31699 41797 TRUE FALSE FALSE 33611.42215 37974.75448 36687.98668 34394.61864 25880.29543 33816.0087 21629.17549 22578.8287 34446.69484 31330.75915 1.072793098 1.212059826 1.170989394 1.097790784 0.826034738 1.079322992 0.69034955 0.720660122 1.099452927 1 14.93529211 -5.652711025 4.793905561 0.887291242 1.154276991 0.43134959 0.132628909 0.191880592 7.259878828 0.040068837 0.051985999 2.22E-06 5.652711025 0.266985749 SRES(ph)VDS(ph)RDS(ph)S(ph)HSRER ddPTM_HeLa_A486_30min_R1 1 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.192)RES(0.808)VDS(1)RDS(0.866)S(0.628)HS(0.506)RER 69.071 0.0045446 1436400000 258780 335700 448420 249600 789700 491890 580390 756670 402930 358640 TRUE FALSE FALSE 240640.8583 309097.9094 622060.2331 581081.4141 690648.4623 431205.613 435170.2833 584392.759 437856.2968 268834.2096 0.895127367 1.149771489 2.313917689 2.161486125 2.569049762 1.603983412 1.618731053 2.173803549 1.628722391 1 18.03635721 -8.021626544 22.50994623 0.999999967 1.83365869 0.193961876 0.494176634 798.8291604 831461.6809 0.512573113 0.132345809 9.51E-09 8.021626544 0.833658723 SRES(ph)VDS(ph)RDS(ph)SHS(ph)R ddPTM_HeLa_A486_30min_R1 2 SRESVDSRDSSHSR 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.154)RES(0.846)VDS(1)RDS(0.988)S(0.03)HS(0.982)R;S(0.088)RES(0.912)VDS(0.999)RDS(0.958)S(0.06)HS(0.983)R ; 92.136 0.0004626 2844000000 2811600 2956400 2490400 1121520 2959100 3239300 2897300 2844000 2827200 3446900 TRUE FALSE FALSE 2614521.359 2722124.097 3454749.575 2610955.238 2587942.085 2839668.101 2172364.895 2196483.284 3072263.972 2583773.804 1.01190025 1.053545822 1.337094435 1.010520052 1.001613253 1.09903897 0.840772088 0.850106646 1.189060732 1 21.30104834 -5.492639757 24.67496191 0.988355683 1.13406517 0.196605322 0.125046747 914.7038756 746396.172 0.035866399 0.053111787 3.22E-06 5.492639757 0.145709487 SRES(ph)VDS(ph)RDS(ph)SHS(ph)RER ddPTM_HeLa_A485_30min_R1 2 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.206)RES(0.796)VDS(0.996)RDS(0.813)S(0.555)HS(0.634)RER;S(0.017)RES(0.983)VDS(1)RDS(0.988)S(0.494)HS(0.518)RER ; 107.75 7.49E-05 3000760000 477840 623530 895360 819530 1653510 902710 1334570 1691840 971280 1216260 TRUE FALSE FALSE 584133.8595 696446.4095 1226590.923 864298.8487 1488880.739 949974.4997 1049428.217 1276913.587 1166206.987 913068.7656 0.639747937 0.762753514 1.343371901 0.946586808 1.630633743 1.040419447 1.14934193 1.398485673 1.277238945 1 19.80036399 -4.684476729 5.293478166 1.232687912 0.675251266 0.532906105 0.196046862 0.139389633 6.735825515 0.0479143 0.131265748 2.07E-05 4.684476729 -0.557436646 SRES(ph)VDS(ph)RDS(ph)SHS(ph)RER ddPTM_HeLa_A486_30min_R1 2 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.11)RES(0.91)VDS(0.979)RDS(0.935)S(0.432)HS(0.634)RER;S(0.06)RES(0.942)VDS(0.995)RDS(0.585)S(0.585)HS(0.833)RER ; 69.27 0.0030067 1290750000 356830 447380 585140 283000 953610 629120 758550 846570 441460 470370 TRUE FALSE FALSE 331818.0597 411927.9795 811721.8786 658838.302 833999.3417 551505.5708 568752.7669 653824.4915 479726.1082 352586.2904 0.941097452 1.168304017 2.302193536 1.868587407 2.365376546 1.564171909 1.61308815 1.854367312 1.360592063 1 18.42761685 -7.992243845 3.879890255 1.001627572 1.729027199 0.225061211 0.418016687 0.290675914 11.40361906 0.427297968 0.112542564 1.02E-08 7.992243845 0.727399626 SRES(ph)VDS(ph)RDS(ph)SHSR ddPTM_HeLa_A485_30min_R1 1 SRESVDSRDSSHSR 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 S(0.159)RES(0.84)VDS(0.998)RDS(0.96)S(0.024)HS(0.018)R 69.922 0.010906 940960000 465650 708210 682310 592870 854800 640330 789070 859540 650690 740520 TRUE FALSE FALSE 569232.236 791028.9989 934724.8623 625256.9869 769693.1106 673856.6887 620478.7484 648736.4673 781277.5145 555921.9923 1.023942647 1.422913664 1.681395727 1.124720726 1.38453438 1.212142527 1.116125566 1.166955933 1.405372562 1 19.08452293 -6.364444503 5.147177682 1.183531656 1.340896834 0.130339239 0.189665723 0.495983374 20.01233597 0.068527906 0.06013052 4.32E-07 6.364444503 0.157365178 SRES(ph)VDS(ph)RDS(ph)SHSR ddPTM_HeLa_A486_30min_R1 1 SRESVDSRDSSHSR 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 0 S(0.061)RES(0.939)VDS(0.829)RDS(0.88)S(0.275)HS(0.016)R 77.031 0.0068357 554120000 773820 797170 785320 372780 1093500 862870 939440 961090 850540 897750 TRUE FALSE FALSE 719579.214 733999.346 1089416.936 867850.6793 956343.0335 756417.8724 704382.1756 742270.7874 924265.492 672947.5566 1.069294638 1.090722953 1.618873454 1.28962602 1.42112565 1.124036881 1.046711841 1.103014314 1.373458426 1 19.36013455 -6.289834413 23.15948269 1.13071183 1.303786143 0.192202248 0.172484923 525.1804763 428343.6088 0.063254263 0.055801804 5.13E-07 6.289834413 0.173074313 SRES(ph)VDS(ph)RDSS(ph)HS(ph)R ddPTM_HeLa_A485_30min_R1 1 SRESVDSRDSSHSR 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.432)RES(0.568)VDS(0.976)RDS(0.529)S(0.608)HS(0.887)R 47.392 0.031324 282470000 125010 200530 170470 157390 149700 152470 164210 154030 129250 181990 TRUE FALSE FALSE 152818.0432 223980.2391 233533.9468 165987.8172 134795.3424 160453.0934 129125.192 116253.901 155189.2894 136623.2423 1.118536207 1.639400701 1.709328098 1.214931035 0.986620872 1.174420185 0.94511878 0.850908667 1.135892304 1 17.05984341 -5.500605693 4.421951509 1.016231425 1.503263394 0.612260398 0.168403952 0.132235182 6.2408572 0.049965796 0.071468588 3.16E-06 5.500605693 0.48703197 SRES(ph)VDS(ph)RDSS(ph)HS(ph)RER ddPTM_HeLa_A485_30min_R1 1 SRESVDSRDSSHSRER 16 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 4 0 S(0.196)RES(0.806)VDS(0.983)RDS(0.272)S(0.829)HS(0.914)RER 72.167 0.0025559 697630000 189450 232950 312260 262580 560510 320860 450400 560540 315350 383290 TRUE FALSE FALSE 231592.4989 260191.4761 427777.9682 276924.0805 504703.6563 337659.7335 354168.3606 423066.6861 378637.8524 287742.8569 0.804859246 0.904249992 1.48666755 0.962401234 1.754009332 1.173477379 1.230850226 1.470294313 1.315889668 1 18.13442059 -4.665143076 6.098936299 1.31254105 0.833618777 0.388755366 0.223367332 0.183660409 9.5383284 0.053455397 0.144850652 2.16E-05 4.665143076 -0.478922273 SRESAS(ph)PTIPNLDLLEAHTK ddPTM_HeLa_A485_30min_R1 1 SRESASPTIPNLDLLEAHTK 20 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 S(0.135)RES(0.135)AS(0.716)PT(0.015)IPNLDLLEAHTK 221.43 1.34E-35 101600000 56712 80570 57773 69681 108930 79259 109240 155460 70576 116840 TRUE FALSE FALSE 69327.38875 89991.96063 79145.63684 73487.49659 98084.54672 83408.87868 85899.98159 117333.1912 84739.95584 87713.93828 0.790380527 1.025971042 0.902315395 0.837808654 1.118232161 0.950919322 0.97931963 1.337680117 0.966094528 1 16.42051849 -6.157675103 0.941824054 1.096310341 0.898551887 0.246222545 0.126299849 0.755959417 1.444676375 0.071018294 0.072449807 6.96E-07 6.157675103 -0.197758454 SRESAS(ph)PTIPNLDLLEAHTK ddPTM_HeLa_A486_30min_R1 1 SRESASPTIPNLDLLEAHTK 20 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 S(0.15)RES(0.15)AS(0.666)PT(0.034)IPNLDLLEAHTK 215.36 1.00E-28 43925000 108040 105690 67178 44562 126600 108590 135880 136430 82304 142130 TRUE FALSE FALSE 100466.9539 97314.73948 93191.12069 103742.588 110720.6475 95193.26986 101881.3868 105367.8672 89438.17699 106539.7229 0.942999955 0.913412733 0.874707744 0.973745615 1.039242871 0.893500258 0.956276063 0.989000763 0.839481975 1 16.70103191 -5.276756122 24.45285213 0.956323442 0.910677399 0.126261786 0.054862869 1240.072175 1979746.251 0.015342129 0.02285304 5.29E-06 5.276756122 -0.045646043 SRESS(ph)PS(ph)HGLLK ddPTM_HeLa_A486_30min_R1 1 SRESSPSHGLLK 12 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 2 0 S(0.057)RES(0.58)S(0.742)PS(0.621)HGLLK 103.39 0.00078056 1414200000 749500 822840 457510 222100 825920 832430 1081600 1056600 673610 992610 TRUE FALSE FALSE 696963.9204 757635.1617 634670.1245 517060.0243 722325.4122 729733.2501 810972.24 816035.2454 731999.0572 744053.9952 0.936711482 1.018252931 0.852989338 0.694922718 0.970797035 0.980753084 1.08993735 1.096741971 0.983798302 1 19.50504779 -6.235660197 2.686988839 1.045676264 0.882610046 0.404359913 0.0859022 0.297517578 4.269322014 0.034488693 0.032535268 5.81E-07 6.235660197 -0.163066218 SRFHS(ph)PS(ph)TTWSPNKDTPQEK ddPTM_HeLa_A485_30min_R1 1 SRFHSPSTTWSPNKDTPQEK 20 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 S(0.173)RFHS(0.775)PS(0.65)T(0.15)T(0.038)WS(0.213)PNKDT(0.001)PQEK 66.017 0.0053026 253410000 171860 229370 130000 119770 256630 251130 402710 476240 193940 237540 TRUE FALSE FALSE 210089.6641 256192.8262 178092.4098 126312.7318 231079.0161 264278.7785 316667.7187 359441.3933 232861.9791 178325.6496 1.178123644 1.436657188 0.998692057 0.708326212 1.295826016 1.48200093 1.775783346 2.015646062 1.30582437 1 17.4441547 -6.202232068 3.083209931 1.604093095 1.094640948 0.283004173 0.309061552 0.295437528 5.577746842 0.11212426 0.108620829 6.28E-07 6.202232068 -0.509452148 SRFHS(ph)PSTTWS(ph)PNKDTPQEK ddPTM_HeLa_A486_30min_R1 1 SRFHSPSTTWSPNKDTPQEK 20 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 S(0.428)RFHS(0.55)PS(0.109)T(0.038)T(0.128)WS(0.744)PNKDT(0.002)PQEK 68.76 0.0034165 475760000 210820 177170 99523 30297 213200 215510 283880 254590 155670 189510 TRUE FALSE FALSE 196042.6067 163130.404 138060.9709 70532.94713 186458.468 188922.5673 212850.2214 196625.4147 169163.6009 142055.4625 1.380042719 1.148357135 0.97188076 0.496516965 1.312575136 1.329921173 1.49835999 1.384145398 1.19082785 1 17.11609478 SRFS(ph)GGFGAR ddPTM_HeLa_A485_30min_R1 6 SRFSGGFGAR 10 1 A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 A0A2R8Y5G6 1 0 SRFS(1)GGFGAR;S(0.002)RFS(0.998)GGFGAR;SRFS(1)GGFGAR;SRFS(1)GGFGAR;SRFS(1)GGFGAR;S(0.183)RFS(0.817)GGFGAR ;;;;; 174.94 5.78E-08 5357840000 1024500 1321910 1339830 1031910 1788620 1317170 1596130 1796500 1246450 1473600 TRUE FALSE FALSE 1252396.491 1476495.875 1835488.872 1088280.63 1610538.713 1386134.984 1255103.786 1355905.558 1496601.082 1106258.64 1.13210098 1.334675114 1.659186022 0.983748819 1.455842834 1.25299359 1.134548234 1.225667769 1.35284917 1 20.07725729 -13.46651837 0.198087298 1.00E-13 1.3324815 0.178756254 0.178660222 189.4147011 2.265229524 75.36977881 0.438748328 3.42E-14 13.46651837 1.3324815 SRFS(ph)GGFGAR ddPTM_HeLa_A486_30min_R1 6 SRFSGGFGAR 10 1 A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4;A0A0J9YVQ7;A0A2R8YDT5 A0A2R8Y5G6 1 0 S(0.012)RFS(0.988)GGFGAR;SRFS(1)GGFGAR;S(0.007)RFS(0.993)GGFGAR;S(0.003)RFS(0.997)GGFGAR;SRFS(1)GGFGAR;SRFS(1)GGFGAR ;;;;; 155.43 1.01E-06 3940100000 1177390 1285780 1095630 427812 1560400 1204040 1474860 1497990 1038840 1303120 TRUE FALSE FALSE 1094861.041 1183890.11 1519887.278 995967.9564 1364680.082 1055497.787 1105834.429 1156930.378 1128887.488 976810.2701 1.120853327 1.211995969 1.555969797 1.019612495 1.397077942 1.080555579 1.132087225 1.184396206 1.15568757 1 19.89771884 -6.28985955 24.96722392 1.123416441 1.261339303 0.211851865 0.144131489 1261.541238 1108264.143 0.049376855 0.043554481 5.13E-07 6.28985955 0.137922862 SRFT(ph)PELQPK ddPTM_HeLa_A486_30min_R1 2 SRFTPELQPK 10 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.08)RFT(0.92)PELQPK;S(0.251)RFT(0.749)PELQPK ; 131.79 8.39E-05 535910000 1129240 1018260 593130 436000 1030180 1079100 1293280 1238870 811800 1287970 TRUE FALSE FALSE 1050086.107 937569.3692 822805.8206 1015030.034 900965.2184 945971.6135 969687.6651 956806.3453 882167.4776 965453.9287 1.087660505 0.971117669 0.852247628 1.051350048 0.933203741 0.979820565 1.004385229 0.991042987 0.913733376 1 19.88084789 SRFWYFVSQLK ddPTM_HeLa_A485_30min_R1 2 SRFWYFVSQLK 11 1 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 218.06 1.78E-20 396150000 488620 531500 438390 576040 775420 418710 731170 568450 322200 779730 FALSE FALSE TRUE 597311.8333 593654.3016 600568.7039 607507.6066 698216.4621 440633.0082 574949.5564 429036.7462 386862.5846 585357.6609 1.020421997 1.014173626 1.025985896 1.03784002 1.192803151 0.752758591 0.982219239 0.732948033 0.660899499 1 19.15895887 -6.272789324 24.9992121 0.818852704 1.052870759 0.530418446 0.109215584 604.3115068 1331043.366 0.038260981 0.034031142 5.34E-07 6.272789324 0.234018055 SRFWYFVSQLK ddPTM_HeLa_A486_30min_R1 2 SRFWYFVSQLK 11 1 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 195.77 3.76E-14 319710000 575660 501360 297240 226410 490250 486170 691090 566060 381760 614850 FALSE FALSE TRUE 535309.2067 461630.4077 412339.2884 527093.9221 428758.2736 426191.2884 518171.9724 437180.495 414851.2642 460887.558 1.161474632 1.001611781 0.894663527 1.14364971 0.930288237 0.924718581 1.124291518 0.948562155 0.900113828 1 18.8140553 -4.27049366 5.029606647 0.985903034 1.168937454 0.291972366 0.08258156 0.200341585 16.00091368 0.020263962 0.125967704 5.36E-05 4.27049366 0.183034421 SRFWYFVSQLKK ddPTM_HeLa_A485_30min_R1 2 SRFWYFVSQLKK 12 2 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 179.5 2.67E-09 1309230000 2257350 2210330 1399740 2135580 2526300 1769600 3631500 3450500 921910 2874000 FALSE FALSE TRUE 2759489.72 2468808.866 1917562.074 2252241.328 2274772.702 1862253.52 2855600.358 2604259.465 1106928.881 2157564.692 1.278983536 1.144257169 0.888762261 1.04388125 1.054324216 0.863127547 1.323529426 1.20703656 0.513045511 1 21.04097239 -4.534434383 5.265449742 1.006008014 1.251822017 0.168923432 0.205722705 0.288158359 24.45186198 0.052000236 0.163751778 2.92E-05 4.534434383 0.245814002 SRFWYFVSQLKK ddPTM_HeLa_A486_30min_R1 2 SRFWYFVSQLKK 12 2 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 190.37 5.67E-10 1162960000 1980530 1548840 750370 1062750 1479780 1430260 2626700 1985060 1031970 2623000 FALSE FALSE TRUE 1841705.074 1426104.278 1040933.36 2474135.708 1294172.194 1253809.063 1969471.878 1533105.172 1121421.991 1966183.727 0.936690223 0.725315879 0.529418154 1.258344108 0.658215291 0.637686624 1.001672352 0.779736477 0.570354629 1 20.90696671 SRGFGFILFK ddPTM_HeLa_A485_30min_R1 2 SRGFGFILFK 10 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 103.34 0.0039301 63003000 60369 201031 91190 46798 179148 244851 344520 686870 68259 104694 FALSE FALSE TRUE 73797.87578 224539.8267 124924.9757 49354.45624 161311.3961 257671.0197 270910.4875 518414.0555 81957.95519 78595.71255 0.93895549 2.856896635 1.589462983 0.627953544 2.052419793 3.27843608 3.446886334 6.595958465 1.042778957 1 16.26216299 -6.214764977 3.452240444 3.468153427 1.583853381 0.160915821 1.573429548 0.363028819 8.871303414 0.540494364 0.521821038 6.10E-07 6.214764977 -1.884300046 SRGFGFVLFK ddPTM_HeLa_A485_30min_R1 2 SRGFGFVLFK 10 1 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44;D6RBQ9;A0A087WUK2;O14979-3;O14979-2;O14979 Q14103-3 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like 0 0 ; ; 150.15 0.00018868 193682000 140208 563760 257240 116400 525650 682590 946430 1925820 185511 216170 FALSE FALSE TRUE 171396.7859 629686.8279 352403.7806 122758.6373 473314.4403 718329.3569 744217.4989 1453509.625 222741.3561 162282.7973 1.05616115 3.88018224 2.171541201 0.756448861 2.916602672 4.426404824 4.585929693 8.956646357 1.372550632 1 17.30815055 -4.256161194 23.32154273 3.531640447 1.056158374 0.076874393 2.290524014 599.256185 2647571.346 0.593618918 4.776527363 5.54E-05 4.256161194 -2.475482073 SRGFGFVLFK ddPTM_HeLa_A486_30min_R1 2 SRGFGFVLFK 10 1 Q14103-3;Q14103;H0YA96;D6RAF8;H0Y8G5;Q14103-4;Q14103-2;D6RF44;D6RBQ9;A0A087WUK2;O14979-3;O14979-2;O14979 Q14103-3 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like 0 0 ; ; 99.568 0.0055052 65871000 150252 86689 91086 76897 220737 97034 190163 199876 64325 198450 FALSE FALSE TRUE 139720.1107 79819.44792 126356.9386 179020.1022 193050.1072 85062.93165 142582.2061 154368.5981 69900.74279 148756.8283 0.939251746 0.536576699 0.849419418 1.203441242 1.297756274 0.571825392 0.95849184 1.037724452 0.469899389 1 17.18259637 -10.06295229 13.35126662 0.999973155 0.883776314 0.018933508 0.263867484 0 0 0.261243812 0.063360931 8.65E-11 10.06295229 -0.116196842 SRGS(ph)PRYS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SRGSPRYSPR 10 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 S(0.027)RGS(0.972)PRY(0.005)S(0.996)PR;S(0.488)RGS(0.512)PRY(0.21)S(0.79)PR ; 127.3 0.00038274 169910000 266430 443149 520621 427195.5 1004480 609864 871845 1149717 552406 614597 TRUE FALSE FALSE 325696.4343 494971.4207 713220.3727 450532.1084 904470.4443 641795.536 685568.1934 867747.1031 663268.8172 461389.2787 0.705903777 1.072784834 1.545810459 0.976468525 1.960319596 1.391006609 1.485878032 1.88072663 1.437547095 1 18.81562496 -4.069778967 0.904072381 1.527010272 4.66E-11 0.37814477 0.302741612 2.800862183 1.434864808 0.099600868 4.569539349 8.52E-05 4.069778967 -1.527010272 SRGS(ph)PRYS(ph)PRHS(ph)R ddPTM_HeLa_A485_30min_R1 1 SRGSPRYSPRHSR 13 3 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 S(0.387)RGS(0.614)PRY(0.461)S(0.538)PRHS(1)R 63.302 0.016391 719000000 88815 207690 307180 128790 696000 407310 618310 1321100 328150 229680 TRUE FALSE FALSE 108571.5903 231977.5388 420818.6648 135825.4716 626703.7962 428636.1218 486203.0174 997098.1536 394006.695 172425.0029 0.629674284 1.345382252 2.440589576 0.787736519 3.634645704 2.485927879 2.819794166 5.78279331 2.285090261 1 17.39560947 -5.76466935 24.99746194 3.205663584 1.385437044 0.304035113 1.234841026 97.60905793 755418.7445 0.371300684 0.438704168 1.72E-06 5.76466935 -1.82022654 SRGSDS(ph)PAADVEIEYVTEEPEIYEPNFIFFKR ddPTM_HeLa_A485_30min_R1 2 SRGSDSPAADVEIEYVTEEPEIYEPNFIFFKR 32 2 E9PPJ0;Q13435;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 S(0.022)RGS(0.022)DS(0.956)PAADVEIEYVTEEPEIYEPNFIFFKR;S(0.004)RGS(0.026)DS(0.97)PAADVEIEYVTEEPEIYEPNFIFFKR ; 192.16 1.11E-21 114196000 22205.5 75334 35303 14668.6 65032 97695 118961 287290 31699 21747.6 TRUE FALSE FALSE 27145.03687 84143.65598 48363.04878 15469.90848 58557.18574 102810.1591 93544.01053 216831.677 38060.69854 16326.32355 1.662654594 5.153864292 2.962274306 0.947543911 3.586673114 6.29720211 5.72964331 13.28110865 2.331247351 1 13.99491233 -4.258114146 23.63878144 4.864784964 1.662651984 0.057136989 3.40104603 466.3971692 3315223.368 0.881150306 6.100728411 5.52E-05 4.258114146 -3.20213298 SRHS(ph)SIS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A485_30min_R1 1 SRHSSISPVRLPLNSSLGAELSR 23 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.154)RHS(0.73)S(0.116)IS(1)PVRLPLNSSLGAELSR 210.58 2.08E-29 252480000 47887 155740 114750 29722 166440 151220 152750 247870 98452 68411 TRUE FALSE FALSE 58539.29794 173952.4382 157200.8001 31345.6376 149868.6492 159137.6454 120113.7146 187079.4939 118210.4133 51357.39671 1.139841614 3.387096103 3.060918392 0.610343195 2.918151207 3.098631464 2.338781214 3.642698147 2.301721289 1 15.64828445 SRHS(ph)SIS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A486_30min_R1 1 SRHSSISPVRLPLNSSLGAELSR 23 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.006)RHS(0.547)S(0.446)IS(1)PVRLPLNSSLGAELSR 188.8 3.34E-21 168440000 103610 70913 85478 15878 158810 62280 94043 117960 72817 48599 TRUE FALSE FALSE 96347.47404 65293.59562 118577.3708 36964.78643 138890.569 54596.52682 70512.44671 91103.08305 79128.83619 36429.49407 2.644765635 1.792327818 3.25498264 1.014693928 3.812585722 1.498690229 1.935586769 2.500805607 2.172109117 1 15.15281934 -10.67651341 0.366593616 2.63E-09 2.35462612 0.203448252 0.776085428 46.82179673 3.186614888 43.01086658 0.536809738 2.11E-11 10.67651341 2.354626117 SRHSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A485_30min_R1 1 SRHSSISPVRLPLNSSLGAELSR 23 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.044)RHS(0.422)S(0.534)IS(1)PVRLPLNSSLGAELSR 213.41 8.72E-30 440180000 72543 210640 152170 26566 187810 175970 182940 344290 125840 79154 TRUE FALSE FALSE 88679.94008 235272.5157 208464.0153 28017.23331 169110.977 185183.5171 143853.3745 259852.3377 151094.9337 59422.36452 1.492366398 3.959326048 3.508174355 0.471493074 2.845914637 3.116394283 2.42086251 4.372972024 2.542728398 1 15.85871839 -5.963533721 24.99945119 2.895285 2.442438101 0.00625815 1.199913734 791.8853312 542873.5492 0.373278239 0.423256472 1.09E-06 5.963533721 -0.452846899 SRHSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_A486_30min_R1 1 SRHSSISPVRLPLNSSLGAELSR 23 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 S(0.038)RHS(0.433)S(0.529)IS(1)PVRLPLNSSLGAELSR 153.39 5.79E-10 160870000 70437 51629 53846 6422.5 93956 42284 59478 71330 51326 37943 TRUE FALSE FALSE 65499.73004 47537.73001 74696.61325 14951.90458 82171.16238 37067.42999 44595.97531 55089.71612 55774.97901 28441.82583 2.302936894 1.671402191 2.626294588 0.525701292 2.889095899 1.303271816 1.567971605 1.936926147 1.961019638 1 14.79572646 -11.27779871 0.260113736 2.25E-27 1.9456989 0.142440022 0.637750562 78.16370473 2.69740628 48.53717714 0.856354515 5.27E-12 11.27779871 1.9456989 SRIPS(ph)PLQPEMQGTPDDEPSEPEPSPSTLIYR ddPTM_HeLa_A485_30min_R1 1 SRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 32 1 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 0 S(0.012)RIPS(0.987)PLQPEMQGT(0.001)PDDEPSEPEPSPSTLIYR 117.09 2.08E-05 471770000 16525 15556 16049 21744 23475 18708 23274 23995 13580 28750 TRUE FALSE FALSE 20200.92924 17375.13888 21986.19295 22931.81966 21137.74657 19687.52195 18301.31977 18110.18863 16305.38144 21583.1541 0.935958162 0.805032425 1.01867377 1.062486954 0.979363186 0.912170754 0.847944637 0.839089066 0.755467962 1 14.39761809 -6.590800755 3.189302545 0.846929028 0.960043523 0.230446981 0.08419415 0.360215024 7.432356582 0.036185734 0.027554658 2.57E-07 6.590800755 0.113114495 SRIPS(ph)PLQPEMQGTPDDEPSEPEPSPSTLIYR ddPTM_HeLa_A486_30min_R1 5 SRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 32 1 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 0 S(0.009)RIPS(0.98)PLQPEMQGT(0.011)PDDEPSEPEPSPSTLIYR;SRIPS(1)PLQPEMQGTPDDEPSEPEPSPSTLIYR;S(0.001)RIPS(0.999)PLQPEMQGTPDDEPSEPEPSPSTLIYR;S(0.001)RIPS(0.996)PLQPEMQGT(0.003)PDDEPSEPEPSPSTLIYR;SRIPS(0.997)PLQPEMQGT(0.003)PDDEPSEPEPSPSTLIYR ;;;; 227.5 1.47E-39 818530000 231399 242476 207919 81101.6 316281 241944 286357 276998 215062 281643 TRUE FALSE FALSE 215179.125 223261.3187 288430.8051 188808.6234 276610.0878 212095.4092 214707.4498 213931.6022 233703.7473 211117.7596 1.019237441 1.05752031 1.366208156 0.894328472 1.310217048 1.004630826 1.01700326 1.013328308 1.106982888 1 17.68768842 SRIVY(ph)HMLERT(ph)K ddPTM_HeLa_A485_30min_R1 1 SRIVYHMLERTK 12 2 E9PQ79;A0A5F9ZHL6;Q9BYT9-2;Q9BYT9 E9PQ79 ANO3 Anoctamin;Anoctamin-3 2 0 SRIVY(1)HMLERT(1)K 43.184 0.031087 244380000 124220 246830 303090 46192 198720 266160 132620 236380 259430 58970 TRUE FALSE FALSE 151852.3104 275694.6214 415215.6036 48715.352 178934.7391 280095.726 104284.6536 178407.4344 311495.2214 44269.86426 3.430150803 6.227591296 9.379193059 1.100417921 4.041908464 6.32700666 2.355657857 4.029997321 7.036281375 1 15.43403733 -5.26505226 24.99989099 3.892849245 6.333839573 0.217134322 2.282398001 519.3242573 3593551.493 0.633863351 0.982964804 5.43E-06 5.26505226 2.440990328 SRKS(ph)PHKDLGHR ddPTM_HeLa_A486_30min_R1 1 SRKSPHKDLGHR 12 3 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 S(0.154)RKS(0.846)PHKDLGHR 129.38 3.07E-05 335910000 827110 453980 272980 221490 259470 861030 910010 1094100 495710 1253800 TRUE FALSE FALSE 769133.8602 418004.9714 378685.1667 515639.9135 226924.8531 754804.8729 682315.8729 844997.314 538678.5419 939840.3191 0.818366529 0.444761693 0.402925006 0.5486463 0.241450434 0.803120336 0.725991276 0.899086043 0.573159643 1 19.84205614 -6.297427965 24.39999688 0.789321933 0.486932357 0.45073719 0.170327608 419.876382 284671.6645 0.057813049 0.050988311 5.04E-07 6.297427965 -0.302389576 SRKS(ph)PS(ph)PAGGGS(ph)SPYSR ddPTM_HeLa_A485_30min_R1 1 SRKSPSPAGGGSSPYSR 17 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 S(0.16)RKS(0.841)PS(0.994)PAGGGS(0.888)S(0.11)PY(0.005)S(0.002)R 81.65 0.0030374 1162000000 435690 477410 353620 670800 703830 595640 980260 1036600 463620 978040 TRUE FALSE FALSE 532607.7374 533238.9466 484438.7534 707444.1054 633754.2139 626826.7894 770819.443 782372.2247 556664.2814 734232.6275 0.725393721 0.726253406 0.659789194 0.963514939 0.8631518 0.853716882 1.049830005 1.065564503 0.75815792 1 19.4858777 -5.264453459 24.99795535 0.937252978 0.706056231 0.58277275 0.090128314 188.0558741 1559687.254 0.025651539 0.039956809 5.44E-06 5.264453459 -0.231196747 SRKS(ph)PS(ph)PAGGGS(ph)SPYSR ddPTM_HeLa_A486_30min_R1 1 SRKSPSPAGGGSSPYSR 17 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 S(0.057)RKS(0.95)PS(0.986)PAGGGS(0.622)S(0.375)PY(0.009)S(0.002)R 78.428 0.0044591 415170000 373780 306040 178920 243610 398120 394080 553650 537750 242470 550890 TRUE FALSE FALSE 347579.9522 281788.2758 248202.6156 567136.3914 348184.0773 345462.4163 415120.9141 415316.064 263487.4948 412943.5583 0.841712978 0.682389325 0.601056998 1.373399294 0.84317595 0.836585072 1.005272768 1.005745351 0.63807145 1 18.65558508 SRKS(ph)PS(ph)PAGGGSS(ph)PYSR ddPTM_HeLa_A485_30min_R1 1 SRKSPSPAGGGSSPYSR 17 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 3 0 S(0.145)RKS(0.849)PS(0.959)PAGGGS(0.341)S(0.663)PY(0.004)S(0.039)R 68.406 0.0088826 327670000 338590 335870 287650 529310 559360 434700 738290 796180 370200 784970 TRUE FALSE FALSE 413908.1774 375147.0748 394063.7051 558224.865 503668.1544 457460.2198 580548.3102 600915.6066 444495.7443 589291.4253 0.702382827 0.636607048 0.668707686 0.9472815 0.854701312 0.776288607 0.985163342 1.019725692 0.754288498 1 19.16862175 -5.254065342 24.29588265 0.90200941 0.665969939 0.610951078 0.086304252 261.9453387 863050.4463 0.023709537 0.039998283 5.57E-06 5.254065342 -0.236039471 SRLGDLYEEEMR ddPTM_HeLa_A486_30min_R1 1 SRLGDLYEEEMR 12 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 82.069 0.0063705 106880000 88983 77961 82793 32139 133670 79267 101810 124750 74539 105790 FALSE FALSE TRUE 82745.75121 71783.08643 114852.6669 74821.21622 116903.8622 69487.84347 76336.06116 96347.14827 81000.10054 79299.49542 1.043458735 0.90521492 1.44834045 0.943527015 1.474206886 0.876270941 0.962629847 1.214978075 1.021445346 1 16.27502407 SRLPKS(ph)PPYTAFLGNLPYDVTEESIKEFFR ddPTM_HeLa_A485_30min_R1 1 SRLPKSPPYTAFLGNLPYDVTEESIKEFFR 30 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89;F8W0K0;F8VSC7;F8VRU1;F8VYE9 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.249)RLPKS(0.695)PPY(0.005)T(0.051)AFLGNLPYDVTEESIKEFFR 122.88 4.79E-06 147750000 85400 115160 49858 60506 156640 226660 395100 708470 62301 121560 TRUE FALSE FALSE 104396.9354 128626.9602 68302.54896 63811.28957 141044.3716 238527.5671 310683.6573 534716.6217 74804.23924 91257.32915 1.14398412 1.409497313 0.748460969 0.699245641 1.545567605 2.613790797 3.404478963 5.859437556 0.819706646 1 16.47765281 -6.264020919 2.562749065 3.155418255 1.021800963 0.257766747 1.33819705 0.328839846 4.278811941 0.493468991 0.456078046 5.44E-07 6.264020919 -2.133617292 SRLS(ph)SSSSNDSGNK ddPTM_HeLa_A485_30min_R1 3 SRLSSSSSNDSGNK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.328)RLS(0.586)S(0.027)S(0.008)S(0.05)S(0.002)NDSGNK;S(0.001)RLS(0.977)S(0.021)S(0.001)SSNDSGNK;S(0.002)RLS(0.946)S(0.049)S(0.003)SSNDSGNK ;; 166.66 2.69E-12 690360000 397930 285620 267511 591820 460630 339295 494910 421223 404278 852890 TRUE FALSE FALSE 486448.1557 319020.7744 366474.451 624149.628 414768.0598 357059.9616 389168.4355 317917.3988 485412.8863 640280.2193 0.759742596 0.498251804 0.572365724 0.974806982 0.647791463 0.557662022 0.607809555 0.496528534 0.758125695 1 19.28834391 -8.013366569 23.09794566 1.00000001 0.639319278 0.40293362 0.133999377 265.9187446 459519.6939 0.133728804 0.034528629 9.70E-09 8.013366569 -0.360680732 SRLS(ph)SSSSNDSGNK ddPTM_HeLa_A486_30min_R1 2 SRLSSSSSNDSGNK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.055)RLS(0.7)S(0.232)S(0.013)SSNDSGNK;S(0.132)RLS(0.656)S(0.186)S(0.021)S(0.004)S(0.001)NDSGNK ; 197 5.07E-22 203950000 126204 133814 90517 70880 137267 204029 205286 198088 127559 183645 TRUE FALSE FALSE 117357.7513 123210.0913 125567.6065 165012.2221 120049.6929 178857.9764 153921.2715 152987.6866 138615.9168 137659.0967 0.852524491 0.895037773 0.912163523 1.19870191 0.872079621 1.299281927 1.118133674 1.111351813 1.00695065 1 17.07074042 -5.13193871 6.008443237 1.092120159 0.881139049 0.411855985 0.109861075 0.217877023 9.687947123 0.028995264 0.051059546 7.38E-06 5.13193871 -0.21098111 SRLT(ph)PVS(ph)PESSSTEEK ddPTM_HeLa_A485_30min_R1 4 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 SRLT(1)PVS(0.952)PES(0.046)S(0.002)STEEK;S(0.014)RLT(0.986)PVS(1)PESSSTEEK;S(0.003)RLT(0.997)PVS(0.683)PES(0.11)S(0.148)S(0.025)T(0.033)EEK;S(0.003)RLT(0.971)PVS(0.533)PES(0.384)S(0.097)S(0.01)T(0.002)EEK ;;; 195.05 1.25E-18 11311250000 2713450 2462720 1882930 3806510 3512420 2799970 4215190 4445550 2460320 4371880 TRUE FALSE FALSE 3317047.591 2750713.681 2579504.162 4014450.003 3162711.132 2946572.1 3314580.222 3355271.892 2954083.657 3282050.774 1.010663094 0.838108204 0.785942796 1.223152924 0.963638697 0.897783825 1.009911317 1.022309563 0.900072503 1 21.64616613 SRLT(ph)PVS(ph)PESSSTEEK ddPTM_HeLa_A486_30min_R1 4 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 S(0.029)RLT(0.971)PVS(0.996)PES(0.004)SSTEEK;S(0.005)RLT(0.995)PVS(1)PESSSTEEK;S(0.018)RLT(0.982)PVS(0.998)PES(0.001)SSTEEK;S(0.377)RLT(0.623)PVS(1)PESSSTEEK ;;; 203.58 2.67E-25 12224000000 5103530 4749910 2727830 2616120 4779570 5497230 6971000 6379760 3684450 6546410 TRUE FALSE FALSE 4745798.902 4373509.833 3784118.83 6090459.571 4180071.763 4819037.654 5226782.068 4927227.917 4003821.093 4907146.326 0.967119908 0.891253193 0.771144486 1.241140811 0.851833527 0.982044825 1.065136786 1.004092316 0.815916385 1 22.22645286 SRLT(ph)PVSPES(ph)SSTEEK ddPTM_HeLa_A485_30min_R1 2 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 SRLT(1)PVS(0.027)PES(0.918)S(0.054)S(0.001)TEEK;SRLT(1)PVS(0.021)PES(0.513)S(0.173)S(0.274)T(0.018)EEK ; 286.46 5.93E-58 1999230000 1031530 878480 643280 1298780 1229790 980160 1443330 1534450 830680 1481610 TRUE FALSE FALSE 1260990.29 981210.5942 881256.0411 1369729.063 1107347.79 1031479.662 1134950.755 1158123.732 997389.8566 1112271.894 1.133706872 0.88216793 0.792302715 1.231469634 0.995572931 0.927362876 1.020389673 1.041223587 0.89671407 1 20.08507807 -4.232524054 22.76256211 0.980310374 1.133707652 0.151732985 0.111260495 6297.345315 4957094.352 0.028121892 2.334119567 5.85E-05 4.232524054 0.153397279 SRLT(ph)PVSPESS(ph)STEEK ddPTM_HeLa_A485_30min_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 SRLT(1)PVS(0.001)PES(0.263)S(0.458)S(0.263)T(0.015)EEK 263.47 1.30E-49 2606600000 2063500 1774900 1257600 2724900 2535000 1976700 2943800 3129900 1772300 3229500 TRUE FALSE FALSE 2522518.456 1982459.115 1722838.573 2873754.387 2282606.499 2080196.955 2314833.081 2362287.118 2127984.354 2424445.085 1.040451884 0.817696028 0.710611506 1.185324595 0.941496474 0.858009517 0.954788828 0.974361982 0.877720171 1 21.20922315 -5.746492998 0.009749851 1.85116414 2.01E-05 0.015509369 0.122849946 18683.84569 52.03546363 4753.267645 5125.876019 1.79E-06 5.746492998 -1.851143995 SRLT(ph)PVSPESSSTEEK ddPTM_HeLa_A485_30min_R1 6 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLT(0.483)PVS(0.483)PES(0.003)S(0.003)S(0.022)T(0.007)EEK;S(0.006)RLT(0.958)PVS(0.033)PES(0.001)S(0.001)STEEK;S(0.004)RLT(0.995)PVS(0.001)PESSSTEEK;S(0.008)RLT(0.991)PVS(0.001)PESSSTEEK;S(0.044)RLT(0.911)PVS(0.044)PESSSTEEK;S(0.014)RLT(0.548)PVS(0.062)PES(0.322)S(0.051)S(0.003)TEEK ;;;;; 257.75 1.64E-50 24003000000 8355160 7812450 5871490 11313760 11073050 9200530 13246350 13659200 7733730 14378820 TRUE FALSE FALSE 10213736.52 8726048.068 8043598.484 11931802.06 9970578.262 9682255.524 10416159.11 10309259.78 9285818.673 10794444.8 0.946203043 0.808383222 0.745160926 1.105365054 0.923676803 0.896966514 0.964955522 0.955052342 0.860240508 1 23.36378571 -5.239797275 24.98140544 0.952475912 0.830762494 0.353525545 0.077051323 928.7384966 1072038.271 0.020796483 0.035977709 5.76E-06 5.239797275 -0.121713418 SRLT(ph)PVSPESSSTEEK ddPTM_HeLa_A486_30min_R1 5 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.001)RLT(0.746)PVS(0.223)PES(0.015)S(0.007)S(0.007)T(0.002)EEK;S(0.003)RLT(0.994)PVS(0.002)PESSSTEEK;SRLT(0.565)PVS(0.411)PES(0.012)S(0.012)STEEK;S(0.003)RLT(0.995)PVS(0.003)PESSSTEEK;S(0.003)RLT(0.997)PVSPESSSTEEK ;;;; 252.8 2.25E-50 27835800000 8448930 8328650 4850450 4320770 8447230 9699600 12395290 11148340 6996060 12792870 TRUE FALSE FALSE 7856703.637 7668657.442 6728674.14 10058970.92 7387699.646 8502961.97 9293857.338 8610106.349 7602484.114 9589452.084 0.819306835 0.799697144 0.701674515 1.048962009 0.770398515 0.886699458 0.969175012 0.897872608 0.792796507 1 23.19301696 -1 0.085637848 1.061693701 0.320167578 0.207702452 0.094001547 278.0486896 1.72644989 2.080370926 24.27650482 0.1 1 -0.741526123 SRLTPVS(ph)PESSSTEEK ddPTM_HeLa_A485_30min_R1 5 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLTPVS(0.79)PES(0.052)S(0.052)S(0.052)T(0.052)EEK;SRLT(0.001)PVS(0.999)PESSSTEEK;SRLT(0.002)PVS(0.412)PES(0.076)S(0.412)S(0.079)T(0.02)EEK;SRLTPVS(1)PESSSTEEK;SRLTPVS(0.999)PESSSTEEK ;;;; 309.33 5.73E-77 11491580000 5960090 7421560 4592660 7044620 8810110 8523760 12978410 15518610 6118300 9782000 TRUE FALSE FALSE 7285891.458 8289446.883 6291676.051 7429449.753 7932944.514 8970050.893 10205466.68 11712646.57 7346186.69 7343527.424 0.99215146 1.128809958 0.856764833 1.011700416 1.080263483 1.22149076 1.389722689 1.594961915 1.000362124 1 22.80804179 -6.22338593 2.463636018 1.29563203 0.999892792 0.283725343 0.176677383 0.324363275 3.879057167 0.065385938 0.06201832 5.98E-07 6.22338593 -0.295739238 SRLTPVS(ph)PESSSTEEK ddPTM_HeLa_A486_30min_R1 4 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLTPVS(0.7)PES(0.253)S(0.023)S(0.023)T(0.001)EEK;SRLT(0.007)PVS(0.948)PES(0.042)S(0.003)S(0.001)TEEK;SRLTPVS(0.386)PES(0.018)S(0.199)S(0.199)T(0.199)EEK;SRLT(0.028)PVS(0.907)PES(0.058)S(0.007)STEEK ;;; 314.91 3.86E-77 2761140000 3197330 2442910 1377837 1447630 2740810 2646750 3875160 3794950 1909710 4407220 TRUE FALSE FALSE 2973213.678 2249324.915 1911372.386 3370155.799 2397032.053 2320220.895 2905553.981 2930922.728 2075245.2 3303623.426 0.899985651 0.680866014 0.578568481 1.020139212 0.72557666 0.702326081 0.8795052 0.887184267 0.628172444 1 21.65561782 -11.13506059 2.398837607 1.466311789 0.778856999 0.201332479 0.132617289 13476774.89 3340748.027 34244562.6 0.033460906 7.33E-12 11.13506059 -0.687454791 SRLTPVSPES(ph)SSTEEK ddPTM_HeLa_A485_30min_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLTPVS(0.177)PES(0.693)S(0.058)S(0.058)T(0.015)EEK 319.89 2.20E-77 441670000 122400 156660 107880 162540 201760 193540 270690 319560 124750 196420 TRUE FALSE FALSE 149627.4577 174980.0242 147789.3013 171419.1486 181672.066 203673.4551 212854.8702 241187.4089 149786.1807 147456.1088 1.014725391 1.18665836 1.002259604 1.162509644 1.232041639 1.381247998 1.443513408 1.635655592 1.0158018 1 17.16992607 -5.829695413 2.20021346 1.342301114 1.081519682 0.195347601 0.186304558 0.403407128 4.003665165 0.061980678 0.075946616 1.48E-06 5.829695413 -0.260781432 SRLTPVSPESS(ph)STEEK ddPTM_HeLa_A485_30min_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLTPVS(0.095)PES(0.04)S(0.391)S(0.391)T(0.082)EEK 168.05 6.28E-11 539850000 257120 304390 206120 327090 402720 355970 570880 659860 275450 466970 TRUE FALSE FALSE 314315.4569 339985.7627 282372.3654 344958.0985 362623.7828 374608.0388 448906.8243 498028.3004 330730.2884 350562.9729 0.896601984 0.969827931 0.805482573 0.98401179 1.034404118 1.068589862 1.2805312 1.420652889 0.943426186 1 18.4193141 -6.083650101 1.550908277 1.188022017 0.903921044 0.386777252 0.135214621 0.358628741 1.741144049 0.055391366 0.057686375 8.25E-07 6.083650101 -0.284100973 SRLTPVSPESSS(ph)TEEK ddPTM_HeLa_A485_30min_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLT(0.027)PVS(0.077)PES(0.066)S(0.066)S(0.698)T(0.066)EEK 265.93 7.06E-50 1901700000 895700 856920 580960 1188100 1216300 920000 1443000 1502000 792380 1549800 TRUE FALSE FALSE 1094945.375 957129.3398 795881.2798 1253002.895 1095200.901 968169.7774 1134691.262 1133632.145 951403.3979 1163463.382 0.941108583 0.822655319 0.684062165 1.076959459 0.941328209 0.832144606 0.975270283 0.974359969 0.817733856 1 20.14999437 -5.260397076 24.99998421 0.940687173 0.816613362 0.293298697 0.091881891 125.9526347 3020981.879 0.025503577 0.041183209 5.49E-06 5.260397076 -0.124073811 SRLTPVSPESSS(ph)TEEK ddPTM_HeLa_A486_30min_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLT(0.004)PVS(0.01)PES(0.084)S(0.084)S(0.734)T(0.084)EEK 247.73 9.60E-41 2342000000 769440 677010 360270 331480 681420 810800 958940 900920 506600 987190 TRUE FALSE FALSE 715506.2294 623361.262 499776.1924 771702.1921 595949.9496 710771.7396 719003.0694 695800.1829 550512.4959 739991.1985 0.96691181 0.842390103 0.675381266 1.042853204 0.805347349 0.960513775 0.971637326 0.940281701 0.743944654 1 19.49714859 -5.273941659 24.99783995 0.919646414 0.829643949 0.143460518 0.106382767 1550.663104 3100489.398 0.029512283 0.044117849 5.32E-06 5.273941659 -0.090002465 SRNEVVT(ph)PEK ddPTM_HeLa_A485_30min_R1 1 SRNEVVTPEK 10 1 A0A494C142;Q99728-3;Q99728-2;Q99728;A0A087X2H0 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 SRNEVVT(1)PEK 75.911 0.012141 232410000 354520 283870 266940 533630 467330 327640 492200 408230 334430 706500 TRUE FALSE FALSE 433381.7509 317066.1272 365692.2143 562780.8557 420800.9843 344794.7238 387037.4491 308110.9524 401547.0334 530382.5522 0.817111628 0.597806481 0.68948764 1.061084784 0.793391454 0.650086852 0.729732619 0.580922112 0.757089448 1 19.01667379 -6.214121928 23.61415319 0.716509197 0.790279224 0.009365137 0.150417571 780.2337979 389380.7569 0.050648223 0.050648029 6.11E-07 6.214121928 0.073770027 SRNEVVT(ph)PEKVCK ddPTM_HeLa_A486_30min_R1 1 SRNEVVTPEKVCK 13 2 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 SRNEVVT(1)PEKVCK 100.58 0.00074609 239570000 686770 490910 247540 260220 614770 559380 774910 831360 387730 808190 TRUE FALSE FALSE 638630.9695 452008.5037 343394.1174 605805.3108 537659.8141 490369.383 581019.3218 642077.4765 421338.7486 605813.9636 1.054170105 0.746117671 0.566830971 0.999985717 0.88749987 0.809438891 0.959072185 1.059859157 0.695491973 1 19.20851531 SRNS(ph)FSSYAQLPKPTSTYSLSSFFR ddPTM_HeLa_A486_30min_R1 1 SRNSFSSYAQLPKPTSTYSLSSFFR 25 2 G3V4K3;Q9H9C1 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 S(0.157)RNS(0.842)FS(0.001)SYAQLPKPTSTYSLSSFFR 161.32 4.45E-14 196950000 153400 139280 101640 58205 152950 164840 188520 207870 133720 173450 TRUE FALSE FALSE 142647.4522 128242.9456 140997.73 135504.1815 133765.5848 144503.7168 141350.302 160542.5388 145310.9573 130016.991 1.097144696 0.98635528 1.084456185 1.042203642 1.028831568 1.111421789 1.087167923 1.23478122 1.11763052 1 16.98834065 -6.478782754 2.343503464 1.130123116 1.046189896 0.170576561 0.06172275 0.400874619 4.381283757 0.024822201 0.019884197 3.32E-07 6.478782754 -0.08393322 SRNS(ph)PLLER ddPTM_HeLa_A485_30min_R1 7 SRNSPLLER 9 1 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 S(0.015)RNS(0.985)PLLER;S(0.03)RNS(0.97)PLLER;SRNS(1)PLLER;S(0.001)RNS(0.999)PLLER;S(0.004)RNS(0.996)PLLER;SRNS(1)PLLER;S(0.004)RNS(0.996)PLLER ;;;;;; 137.62 7.95E-05 15529600000 973205 1333610 1165200 969863 1398830 1247310 1448680 1586610 1074130 1338560 TRUE FALSE FALSE 1189691.095 1489564.089 1596255.968 1022844.16 1259557.574 1312617.223 1139157.683 1197491.41 1289698.038 1004881.626 1.18391168 1.482327918 1.588501497 1.017875273 1.253438754 1.306240644 1.133623756 1.191674102 1.283432799 1 19.93859413 -8.544276969 0.039117325 7.18E-07 2.285946372 0.267813351 0.150706246 203.0297539 3.288072603 104.8698019 85.89024186 2.86E-09 8.544276969 2.285945654 SRNS(ph)PLLER ddPTM_HeLa_A486_30min_R1 6 SRNSPLLER 9 1 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 S(0.22)RNS(0.78)PLLER;S(0.001)RNS(0.999)PLLER;SRNS(1)PLLER;S(0.01)RNS(0.99)PLLER;S(0.001)RNS(0.999)PLLER;S(0.001)RNS(0.999)PLLER ;;;;; 141.34 6.00E-05 13302630000 1523870 1790360 1490960 546293 1825460 1518740 1902310 1784800 1496270 1682830 TRUE FALSE FALSE 1417054.582 1648485.353 2068299.641 1271797.712 1596493.785 1331373.3 1426331.917 1378440.002 1625967.888 1261438.415 1.123364063 1.306829833 1.639635845 1.00821229 1.265613736 1.055440587 1.130718631 1.092752516 1.288979208 1 20.26663834 -5.295445578 24.9852428 1.127903189 1.351632245 0.347746328 0.148036803 691.322898 507931.4559 0.041022105 0.06084947 5.06E-06 5.295445578 0.223729056 SRPALS(ph)PLGDIDFCPPNPGPDGPR ddPTM_HeLa_A485_30min_R1 2 SRPALSPLGDIDFCPPNPGPDGPR 24 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 S(0.045)RPALS(0.955)PLGDIDFCPPNPGPDGPR;S(0.066)RPALS(0.934)PLGDIDFCPPNPGPDGPR ; 179.41 1.16E-20 501070000 199992 204003 221637 202292 308620 197301 240687 242113 232735 283418 TRUE FALSE FALSE 244479.5304 227859.3763 303629.7494 213342.6997 277892.7092 207631.3753 189262.2562 182734.4071 279442.7797 212767.1085 1.149047577 1.070933275 1.427052102 1.002705264 1.306088667 0.975862184 0.889527792 0.858847067 1.313373959 1 17.69891562 -6.282762511 23.96115667 0.991325456 1.187120629 0.247119682 0.158940711 656.1633843 737338.622 0.054404092 0.048033209 5.21E-07 6.282762511 0.195795173 SRPALS(ph)PLGDIDFCPPNPGPDGPR ddPTM_HeLa_A486_30min_R1 2 SRPALSPLGDIDFCPPNPGPDGPR 24 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 S(0.175)RPALS(0.825)PLGDIDFCPPNPGPDGPR;S(0.015)RPALS(0.985)PLGDIDFCPPNPGPDGPR ; 144.45 1.76E-09 508960000 216493 255323 226073 80275 289103 219323 254991 252859 220606 235298 TRUE FALSE FALSE 201317.9587 235090.2756 313614.52 186884.2569 252841.006 192265.1582 191189.5548 195288.5256 239728.3057 176377.8493 1.141401596 1.332878684 1.778083367 1.059567614 1.433519045 1.09007542 1.08397713 1.107216844 1.359174674 1 17.42830986 -6.267045492 24.86169213 1.132032879 1.355937812 0.236892525 0.198073278 666.908493 2957560.539 0.068705724 0.062293014 5.41E-07 6.267045492 0.223904933 SRPCSLPVS(ph)ELETVIASACGDPETPR ddPTM_HeLa_A485_30min_R1 1 SRPCSLPVSELETVIASACGDPETPR 26 1 Q76N89-2;Q76N89 Q76N89-2 HECW1 E3 ubiquitin-protein ligase HECW1 1 0 S(0.092)RPCS(0.248)LPVS(0.33)ELET(0.33)VIAS(0.001)ACGDPETPR 41.914 0.033828 7295400 5500.4 5528.9 5987.1 7177.2 8531.6 6008.3 7939 7588.8 8194.1 5906.6 TRUE FALSE FALSE 6723.945004 6175.45676 8201.977434 7569.272262 7682.163948 6322.885297 6242.767794 5727.634901 9838.580709 4434.193323 1.516385172 1.392690014 1.849711286 1.707023513 1.732482864 1.425938122 1.407870009 1.291697155 2.218798323 1 12.11445596 -6.269198626 24.29245777 1.483279877 1.641350186 0.070083009 0.308821331 1354.634549 4241040.495 0.105374304 0.094788161 5.38E-07 6.269198626 0.158070309 SRPET(ph)GRPRPK ddPTM_HeLa_A486_30min_R1 1 SRPETGRPRPK 11 3 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435;A0A2R8Y6L3;Q9NQ39 P46783 RPS10;RPS10-NUDT3;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 SRPET(1)GRPRPK 71.806 0.015616 17966000 11779 8354.4 8487.2 4825.8 8436.3 11770 13939 11592 8300.4 11684 TRUE FALSE FALSE 10953.35293 7692.366918 11773.67114 11234.70628 7378.140589 10317.93707 10451.31477 8952.754652 9019.885355 8758.25035 1.250632545 0.878299502 1.344294884 1.282756924 0.84242175 1.178081998 1.193310804 1.022208123 1.029872976 1 13.09642697 -7.288277202 20.82094804 1.019530021 1.132124978 0.114371351 0.153771505 244.4297665 189622.7286 0.084013284 0.040406724 5.15E-08 7.288277202 0.112594957 SRPFTVAASFQSTSVKS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SRPFTVAASFQSTSVKSPK 19 2 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SRPFTVAASFQS(0.002)T(0.008)S(0.005)VKS(0.984)PK;SRPFTVAASFQST(0.001)S(0.002)VKS(0.997)PK ; 82.342 0.0013149 1970320000 822300 645510 322700 1325850 1021630 855220 1569980 1582430 526870 2021420 TRUE FALSE FALSE 1005217.798 720996.7793 442080.1587 1398277.828 919912.93 899997.9968 1234540.947 1194336.561 632607.9763 1517517.195 0.662409494 0.475116052 0.291318056 0.921424701 0.60619605 0.593072684 0.813526826 0.787033297 0.416870384 1 20.53328143 -14 0.11621655 2.135174266 0.439715282 0.269339399 0.183359675 216.9968864 1.648345296 59.10920689 1.975118764 1.00E-14 14 -1.695458984 SRPFTVAASFQSTSVKS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SRPFTVAASFQSTSVKSPK 19 2 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 SRPFTVAASFQSTSVKS(1)PK;SRPFTVAASFQSTS(0.007)VKS(0.992)PK ; 200.74 1.19E-25 2687500000 1581190 1065460 419160 1338770 1030400 1663510 2694500 2381100 806400 2886200 TRUE FALSE FALSE 1470356.746 981029.0693 581469.9775 3116724.218 901157.6239 1458283.05 2020307.6 1838975.509 876299.4013 2163476.734 0.679626789 0.453450252 0.268766457 1.440609076 0.416532154 0.674046097 0.93382451 0.850009376 0.405042212 1 21.04492018 SRPLATGPS(ph)SQSHQEK ddPTM_HeLa_A485_30min_R1 1 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 S(0.061)RPLAT(0.061)GPS(0.438)S(0.438)QS(0.002)HQEK 76.539 0.0034218 128880000 86476 93757 69982 113540 117980 108040 147670 150930 88244 142720 TRUE FALSE FALSE 105712.2879 104721.0656 95871.25399 119742.4027 106233.4969 113696.8073 116119.0981 113914.1809 105953.7614 107142.5306 0.986651027 0.977399591 0.894801098 1.117599165 0.99151566 1.061173436 1.083781553 1.063202262 0.988904787 1 16.70917175 -5.257454642 24.9981233 1.046591812 0.955395477 0.45578582 0.045363422 300.3237713 1884063.831 0.01211062 0.020012438 5.53E-06 5.257454642 -0.091196335 SRPLATGPS(ph)SQSHQEK ddPTM_HeLa_A486_30min_R1 1 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 S(0.012)RPLAT(0.012)GPS(0.488)S(0.488)QSHQEK 89.846 0.00063482 211230000 172920 182740 98575 97547 160390 173930 215630 204200 133950 255960 TRUE FALSE FALSE 160799.201 168259.0169 136745.8799 227094.3458 140272.3906 152472.285 161677.0933 157708.1177 145560.8939 191865.95 0.838080967 0.876961321 0.712715726 1.18360942 0.731095802 0.794681313 0.842656518 0.821970327 0.758659334 1 17.54973918 SRPLATGPSS(ph)QSHQEK ddPTM_HeLa_A485_30min_R1 1 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 SRPLATGPS(0.011)S(0.959)QS(0.03)HQEK 176.1 5.09E-13 151130000 46072 66144 52641 60406 73551 57068 87185 87380 42430 80157 TRUE FALSE FALSE 56320.55745 73878.96542 72115.09647 63705.82682 66228.00419 60055.99224 68557.21251 65949.91799 50945.31181 60175.33508 0.935940903 1.22772836 1.198416201 1.05867008 1.100583887 0.998016748 1.139290914 1.095962622 0.84661451 1 15.87688465 -7.744165171 24.72075991 0.923307316 1.099551221 0.372958157 0.088492523 182.1067407 260611.6208 0.059025436 0.022187479 1.80E-08 7.744165171 0.176243904 SRPLATGPSS(ph)QSHQEK ddPTM_HeLa_A486_30min_R1 3 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 SRPLATGPS(0.08)S(0.92)QSHQEK;SRPLATGPS(0.044)S(0.952)QS(0.004)HQEK;SRPLATGPS(0.012)S(0.787)QS(0.201)HQEK ;; 187.06 3.67E-18 290265000 163429 146899 97106 35158.3 167539 157329 181887 182806 137613 187931 TRUE FALSE FALSE 151973.471 135258.1882 134708.0438 81850.2992 146524.6964 137919.3476 136376.9488 141185.0644 149541.4056 140871.8544 1.078806492 0.960150548 0.956245266 0.581026633 1.040127547 0.979041187 0.968092238 1.002223369 1.061542111 1 17.10402387 SRPT(ph)SEGS(ph)DIESTEPQK ddPTM_HeLa_A485_30min_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.051)RPT(0.813)S(0.136)EGS(0.591)DIES(0.408)T(0.001)EPQK 290.09 4.98E-67 863440000 1167600 1105800 784600 1632000 1507500 1294400 1677600 1532100 1090600 2318800 TRUE FALSE FALSE 1427328.592 1235113.691 1074856.19 1721152.028 1357408.007 1362172.782 1319167.055 1156350.073 1309473.416 1740765.834 0.819942903 0.709523169 0.617461676 0.988732656 0.779776338 0.78251351 0.757808448 0.664276636 0.752239842 1 20.73129072 -11.35578692 2.149958575 2.383811081 0.762262289 0.361541398 0.094235262 8036478.925 716333.65 54255652.35 0.024979056 4.41E-12 11.35578692 -1.621548792 SRPT(ph)SEGSDIESTEPQK ddPTM_HeLa_A485_30min_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.012)RPT(0.367)S(0.367)EGS(0.253)DIESTEPQK 115.66 0.0001197 624520000 630770 700450 561810 494630 1045500 884370 903980 1018500 754450 709180 TRUE FALSE FALSE 771082.6104 782361.5344 769646.8979 521650.3844 941406.349 930674.2457 710837.2882 768711.2781 905861.1948 532394.4775 1.448329468 1.469514744 1.44563276 0.9798193 1.768249651 1.748091472 1.335170289 1.443875379 1.701484957 1 19.02213608 -9.961300193 5.063926046 0.999997385 1.476789931 0.303815284 0.218859348 6.64E-06 1.36E-06 0.217151735 0.052666741 1.09E-10 9.961300193 0.476792546 SRPT(ph)SEGSDIESTEPQK ddPTM_HeLa_A486_30min_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.001)RPT(0.373)S(0.373)EGS(0.253)DIESTEPQK 216.04 6.25E-34 2984800000 2902300 3019500 1588100 893180 2880800 3004900 3353400 3069900 2302500 3047500 TRUE FALSE FALSE 2698863.757 2780223.823 2203054.851 2079368.179 2519463.202 2634185.99 2514343.851 2370950.785 2502082.554 2284386.164 1.181439373 1.217055096 0.964396863 0.910252483 1.102905998 1.153126398 1.10066498 1.03789404 1.095297543 1 21.12337512 -4.744437005 24.99980462 1.049944955 1.199247342 0.438521412 0.069416937 254.6325254 374398.4627 0.01963634 0.051665806 1.80E-05 4.744437005 0.149302387 SRPT(ph)SFADELAAR ddPTM_HeLa_A486_30min_R1 1 SRPTSFADELAAR 13 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 S(0.066)RPT(0.608)S(0.326)FADELAAR 99.915 0.0018262 103610000 207130 209310 154580 64531 203440 186120 214790 179160 163570 205850 TRUE FALSE FALSE 192611.2566 192723.5133 214437.5158 150231.4292 177922.6582 163158.4067 161047.2702 138369.179 177748.3793 154303.8201 1.248259806 1.24898731 1.389709701 0.973607971 1.153067099 1.057384105 1.043702418 0.896732038 1.151937646 1 17.23541425 -5.265836899 24.99835953 1.040840808 1.290985779 0.677657074 0.080938555 212.0669846 1205528.227 0.022294847 0.034396707 5.42E-06 5.265836899 0.250144971 SRPTPQDYEMRVS(ph)PSDTTPLVSR ddPTM_HeLa_A485_30min_R1 3 SRPTPQDYEMRVSPSDTTPLVSR 23 2 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 SRPTPQDYEMRVS(0.814)PS(0.186)DTTPLVSR;SRPTPQDYEMRVS(0.991)PS(0.009)DTTPLVSR;SRPTPQDYEMRVS(0.995)PS(0.005)DTTPLVSR ;; 161.05 1.51E-14 1314280000 478285 850050 761680 465850 977580 814970 1037430 1258100 684790 679410 TRUE FALSE FALSE 584677.8482 949455.953 1043457.128 491298.2059 880248.7027 857640.569 815774.6055 949549.0024 822221.0717 510045.5906 1.146324679 1.861511933 2.045811487 0.963243708 1.725823571 1.68149786 1.599415073 1.861694366 1.612054073 1 18.96026668 -10.12155811 4.077005209 0.999846468 1.624444948 0.256176435 0.311470153 206767191.6 374500735.6 441229.9201 0.076101708 7.56E-11 10.12155811 0.62459848 SRPTPQDYEMRVS(ph)PSDTTPLVSR ddPTM_HeLa_A486_30min_R1 2 SRPTPQDYEMRVSPSDTTPLVSR 23 2 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 SRPTPQDYEMRVS(0.819)PS(0.175)DT(0.001)T(0.004)PLVSR;SRPTPQDYEMRVS(0.838)PS(0.162)DTTPLVSR ; 118.97 2.88E-05 1000800000 424950 422750 352740 169810 578630 364090 486110 533900 325870 465040 TRUE FALSE FALSE 395163.1994 389249.7504 489330.3747 395326.2617 506052.8299 319172.2776 364480.1365 412342.625 354116.674 348590.9571 1.133601407 1.116637545 1.403738005 1.134069182 1.451709574 0.915606877 1.045581158 1.182883883 1.015851578 1 18.41117562 -6.276291754 24.97872457 1.04426473 1.242984007 0.439253303 0.121546368 849.3950394 1428508.246 0.042425129 0.037559837 5.29E-07 6.276291754 0.198719277 SRPTS(ph)EGS(ph)DIESTEPQK ddPTM_HeLa_A485_30min_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.026)RPT(0.053)S(0.921)EGS(0.599)DIES(0.4)TEPQK 315.35 1.46E-78 605840000 1048900 962740 697230 1504400 1294200 1054900 1548500 1341000 1056300 2088500 TRUE FALSE FALSE 1282224.186 1075324.068 955164.3912 1586581.563 1165344.904 1110132.933 1217650.325 1012117.647 1268289.721 1567875.386 0.817810011 0.685847917 0.60920938 1.011930908 0.743263728 0.708049213 0.776624428 0.645534496 0.808922528 1 20.58037947 -8.021699384 23.37794871 1.000000006 0.74950602 0.338318012 0.105152688 856.854904 923137.8959 0.10131456 0.026159307 9.51E-09 8.021699384 -0.250493986 SRPTS(ph)EGS(ph)DIESTEPQK ddPTM_HeLa_A486_30min_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.011)RPT(0.155)S(0.834)EGS(0.902)DIES(0.098)TEPQK 303.34 3.18E-68 946810000 1888800 1876800 942370 787260 1735200 1946300 2297000 2281900 1495300 2457400 TRUE FALSE FALSE 1756404.874 1728075.533 1307280.902 1832781.066 1517555.036 1706185.295 1722266.305 1762361.184 1624913.808 1842051.045 0.953504996 0.938125758 0.709687663 0.994967578 0.823839839 0.926242136 0.934972084 0.956738516 0.88212203 1 20.81288161 -6.49897295 22.98720495 0.93853222 0.882662013 0.11487731 0.078353181 653.0492766 627957.2509 0.027036966 0.023675945 3.17E-07 6.49897295 -0.055870206 SRPTS(ph)EGS(ph)DIESTEPQKQCSK ddPTM_HeLa_A485_30min_R1 1 SRPTSEGSDIESTEPQKQCSK 21 2 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.003)RPT(0.365)S(0.633)EGS(0.998)DIESTEPQKQCSK 118.63 0.00011046 410990000 192300 260290 131220 143090 303300 350240 538210 790530 166020 228180 TRUE FALSE FALSE 235076.4716 290728.6513 179763.7385 150906.6444 273102.387 368578.0248 423217.0367 596651.278 199338.6912 171298.9253 1.372317258 1.697200672 1.049415448 0.880954998 1.594302979 2.151665716 2.470634511 3.483099948 1.163689094 1 17.38615658 -6.163008381 3.26331325 2.24197275 1.265986744 0.210554395 0.686266992 0.323263045 6.559557283 0.235999661 0.234113962 6.87E-07 6.163008381 -0.975986005 SRPTS(ph)EGS(ph)DIESTEPQKQCSK ddPTM_HeLa_A486_30min_R1 1 SRPTSEGSDIESTEPQKQCSK 21 2 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.027)RPT(0.558)S(0.756)EGS(0.657)DIES(0.001)TEPQKQCSK 67.866 0.024458 289650000 196700 126130 76132 86432 217410 132460 234310 252100 82824 257160 TRUE FALSE FALSE 182912.3458 116134.9994 105612.3493 201218.064 190140.4105 116118.432 175683.1597 194702.3333 90003.25101 192765.4622 0.948885468 0.602467881 0.547880041 1.043849151 0.986382147 0.602381934 0.911382972 1.010047812 0.466905482 1 17.55648706 -11.2928239 2.384522582 2.018632285 0.796027674 0.084147674 0.206152863 33665487.92 3862452.275 185895186.8 0.053983659 5.10E-12 11.2928239 -1.222604611 SRPTS(ph)EGSDIES(ph)TEPQK ddPTM_HeLa_A486_30min_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.138)RPT(0.407)S(0.45)EGS(0.092)DIES(0.831)T(0.082)EPQK 174.04 8.73E-12 1122800000 2438700 2293900 1380200 1081600 2357100 2743100 3126200 3147300 2120900 3619000 TRUE FALSE FALSE 2267759.723 2112123.01 1914650.403 2518019.461 2061450.539 2404684.212 2343991.694 2430728.495 2304741.32 2712778.844 0.835954515 0.778582823 0.705789345 0.928206686 0.759903648 0.8864284 0.864055579 0.896028993 0.849586882 1 21.37134001 -9.701746657 0.12733132 1.195268329 0.70704972 0.490247116 0.058209082 25.3640842 0.752363686 2.381045326 0.679663874 1.99E-10 9.701746657 -0.488218608 SRPTSEGS(ph)DIESTEPQK ddPTM_HeLa_A485_30min_R1 3 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 0 SRPT(0.004)S(0.004)EGS(0.991)DIESTEPQK;S(0.002)RPT(0.159)S(0.159)EGS(0.68)DIESTEPQK;SRPT(0.005)S(0.005)EGS(0.88)DIES(0.11)T(0.001)EPQK ;; 179.42 7.77E-18 5073300000 4166810 3795300 2839630 4661230 5023330 4039720 5593680 5223860 3677640 6421360 TRUE FALSE FALSE 5093702.509 4239127.32 3890127.304 4915861.192 4523189.627 4251233.493 4398544.572 3942700.144 4415708.615 4820633.128 1.056645958 0.879371487 0.806974354 1.019754265 0.938297835 0.881882811 0.912441261 0.81788015 0.916001798 1 22.20079121 -6.253465733 23.55757362 0.894683718 0.933846213 0.035433389 0.077115313 939.6640286 2776169.468 0.025794883 0.025311133 5.58E-07 6.253465733 0.039162496 SRPTSEGS(ph)DIESTEPQK ddPTM_HeLa_A486_30min_R1 5 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.014)RPT(0.22)S(0.22)EGS(0.545)DIESTEPQK;S(0.001)RPT(0.098)S(0.098)EGS(0.803)DIESTEPQK;S(0.002)RPT(0.077)S(0.077)EGS(0.845)DIESTEPQK;SRPTSEGS(1)DIESTEPQK;S(0.002)RPT(0.124)S(0.124)EGS(0.75)DIESTEPQK ;;;; 192.64 1.90E-18 5706170000 7150730 6882090 3805030 2360470 6650180 6532240 7529210 7353210 5700630 7413960 TRUE FALSE FALSE 6649500.753 6336728.124 5278439.518 5495293.452 5816052.414 5726358.644 5645322.022 5679044.602 6194765.198 5557456.159 1.196500802 1.140220983 0.94979418 0.988814539 1.046531407 1.03039205 1.015810446 1.021878435 1.114676395 1 22.40599323 -4.599498776 5.779835662 1.022031353 1.18340904 0.687454701 0.040478362 0.100355 5.532647249 0.010622976 0.029389723 2.51E-05 4.599498776 0.161377687 SRPTSEGS(ph)DIESTEPQKQCSK ddPTM_HeLa_A485_30min_R1 3 SRPTSEGSDIESTEPQKQCSK 21 2 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.001)RPT(0.001)S(0.001)EGS(0.997)DIESTEPQKQCSK;S(0.001)RPT(0.004)S(0.006)EGS(0.989)DIESTEPQKQCSK;SRPTSEGS(1)DIESTEPQKQCSK ;; 264.14 1.79E-59 2619850000 1737680 2360270 1296350 1301300 2725590 3227210 4475000 6692500 1653830 2051650 TRUE FALSE FALSE 2124220.921 2636283.045 1775923.811 1372386.724 2454220.689 3396181.725 3518879.693 5051153.882 1985738.511 1540211.413 1.3791749 1.711637132 1.153038989 0.891037888 1.59343105 2.205010103 2.284673171 3.279519837 1.2892636 1 20.55469696 -6.128193385 3.824205752 2.170251018 1.299119218 0.217365762 0.613803194 0.300760701 7.736227455 0.204389432 0.205916164 7.44E-07 6.128193385 -0.8711318 SRPTSEGS(ph)DIESTEPQKQCSK ddPTM_HeLa_A486_30min_R1 2 SRPTSEGSDIESTEPQKQCSK 21 2 Q4G0J3;Q4G0J3-3;H0YA82;D6RFF0 Q4G0J3 LARP7 La-related protein 7 1 0 SRPT(0.001)S(0.001)EGS(0.999)DIESTEPQKQCSK;SRPT(0.018)S(0.018)EGS(0.964)DIESTEPQKQCSK ; 186.3 1.29E-19 875370000 684210 416680 253390 262910 585360 406970 712500 671770 309200 725820 TRUE FALSE FALSE 636250.4123 383660.7593 351509.394 612067.7667 511938.6905 356762.1792 534224.9639 518822.6356 336001.705 544069.9477 1.169427598 0.705168078 0.646073902 1.124979921 0.940942783 0.655728516 0.98190493 0.953595467 0.617570785 1 19.05343262 SRPVS(ph)MDAR ddPTM_HeLa_A485_30min_R1 3 SRPVSMDAR 9 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 S(0.004)RPVS(0.996)MDAR;SRPVS(1)MDAR;S(0.019)RPVS(0.981)MDAR ;; 105.65 0.00055787 1237380000 1309601 1828240 1588225 1203136 1880129 1638996 1945083 2063325 1295806 1768197 TRUE FALSE FALSE 1600917.224 2042036.764 2175775.519 1268860.273 1692936.755 1724811.296 1529500.127 1557291.309 1555862.378 1327418.029 1.206038482 1.53835244 1.639103486 0.955885972 1.275360676 1.299373113 1.15223697 1.173173239 1.172096765 1 20.34019134 -5.902204992 0.248742111 0.995522243 1.56254417 0.298896584 0.169402106 5.564686772 0.625923438 0.320356117 0.994886293 1.25E-06 5.902204992 0.567021927 SRPVS(ph)MDAR ddPTM_HeLa_A486_30min_R1 5 SRPVSMDAR 9 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 SRPVS(1)MDAR;SRPVS(1)MDAR;SRPVS(1)MDAR;S(0.028)RPVS(0.972)MDAR;S(0.008)RPVS(0.992)MDAR ;;;; 119.39 0.00023867 1898870000 2524630 2944180 2571690 940002 3139410 2255980 2842470 2588930 2161820 2287520 TRUE FALSE FALSE 2347666.474 2710872.454 3567517.24 2188372.161 2745635.924 1977660.125 2131253.941 1999487.155 2349208.298 1714710.103 1.369133167 1.580950885 2.080536666 1.276234483 1.601224557 1.15334955 1.242923768 1.166078833 1.370032342 1 20.70953326 -6.052856766 1.527934968 1.193711295 1.634971928 0.434226131 0.219453002 0.378421394 1.792416438 0.089340054 0.095402003 8.85E-07 6.052856766 0.441260633 SRQPS(ph)PLLLLPPPAGLTSDPGPSVR ddPTM_HeLa_A485_30min_R1 4 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 0 S(0.185)RQPS(0.815)PLLLLPPPAGLTSDPGPSVR;S(0.048)RQPS(0.952)PLLLLPPPAGLTSDPGPSVR;S(0.191)RQPS(0.809)PLLLLPPPAGLTSDPGPSVR;S(0.032)RQPS(0.968)PLLLLPPPAGLTSDPGPSVR ;;; 103.5 0.00033273 1147610000 353369 503874 476227 349251 548071 459469 568638 589906 404740 469702 TRUE FALSE FALSE 431974.7149 562797.6812 652403.1848 368329.6978 493503.1268 483526.0864 447143.846 445230.6286 485967.6055 352613.9356 1.225064217 1.596073281 1.850191155 1.044569317 1.399556504 1.371261988 1.268083308 1.262657495 1.378186045 1 18.42772997 -12.68231996 0.093611808 1.49E-09 1.715908021 0.267901007 0.202314373 195.7191852 1.67117594 42.95734678 4.745376967 2.08E-13 12.68231996 1.71590802 SRQPS(ph)PLLLLPPPAGLTSDPGPSVR ddPTM_HeLa_A486_30min_R1 4 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 0 S(0.031)RQPS(0.969)PLLLLPPPAGLTSDPGPSVR;S(0.036)RQPS(0.964)PLLLLPPPAGLTSDPGPSVR;S(0.076)RQPS(0.924)PLLLLPPPAGLTSDPGPSVR;S(0.075)RQPS(0.925)PLLLLPPPAGLTSDPGPSVR ;;; 109.65 0.00017616 931320000 303391 266398 239218 106926 336253 244407 292819 312704 242769 298067 TRUE FALSE FALSE 282124.8576 245287.6523 331849.6161 248929.1317 294077.0133 214254.5493 219552.5891 241508.1255 263812.4124 223429.0831 1.262704271 1.097832247 1.485257029 1.114130391 1.316198452 0.958937603 0.982650003 1.080916245 1.180743387 1 17.76945746 -6.258383129 24.99971122 1.042081746 1.251421494 0.461172159 0.115927588 259.6857277 2124195.366 0.03840393 0.036840611 5.52E-07 6.258383129 0.209339748 SRQQSSSSRES(ph)PVPK ddPTM_HeLa_A485_30min_R1 2 SRQQSSSSRESPVPK 15 2 Q9UJF2-2;H0Y638;Q9UJF2 Q9UJF2-2;Q9UJF2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.099)RQQS(0.044)S(0.013)S(0.01)S(0.008)RES(0.826)PVPK;S(0.025)RQQS(0.015)S(0.017)S(0.015)S(0.013)RES(0.916)PVPK ; 57.496 0.024777 91512000 49312 99150 56193 43203 101248 114897 162143 259620 60287 70679 TRUE FALSE FALSE 60281.28428 110744.73 76981.12909 45563.07049 91167.39362 120912.8293 127499.8235 195947.7879 72386.04791 53060.02605 1.136096017 2.08715936 1.45083097 0.858708031 1.718193533 2.278793251 2.402935561 3.692945566 1.364229408 1 15.69533776 -6.171826595 3.600823396 2.336923374 1.426124043 0.168879266 0.737473127 0.351625856 8.605132217 0.249413109 0.247035263 6.73E-07 6.171826595 -0.910799331 SRQT(ph)PS(ph)PDVVLR ddPTM_HeLa_A485_30min_R1 2 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.052)RQT(0.948)PS(1)PDVVLR;S(0.273)RQT(0.738)PS(0.988)PDVVLR ; 139.49 4.58E-06 5712000000 873800 1106490 1096260 1001480 1364100 1107680 1218240 1288060 996710 1234820 TRUE FALSE FALSE 1068173.795 1235884.38 1501812.193 1056188.317 1228285.414 1165676.412 957953.0719 972161.2654 1196740.555 927002.0992 1.152288432 1.33320559 1.62007421 1.139359142 1.325008234 1.25746901 1.033388244 1.048715279 1.290979336 1 19.82221308 -6.609055036 4.684529055 1.098409248 1.319935967 0.347452058 0.143141887 0.251404676 9.850866631 0.056948684 0.043615728 2.46E-07 6.609055036 0.22152672 SRQT(ph)PS(ph)PDVVLR ddPTM_HeLa_A486_30min_R1 6 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 S(0.197)RQT(0.803)PS(1)PDVVLR;S(0.052)RQT(0.948)PS(1)PDVVLR;S(0.31)RQT(0.69)PS(0.999)PDVVLR;S(0.286)RQT(0.714)PS(1)PDVVLR;S(0.265)RQT(0.736)PS(0.999)PDVVLR;S(0.423)RQT(0.581)PS(0.996)PDVVLR ;;;;; 145.04 1.71E-07 10899040000 1991680 2083560 1738250 743364 2340670 1957290 2187540 2333470 1829170 2294570 TRUE FALSE FALSE 1852073.517 1918451.117 2411346.952 1730588.96 2047081.343 1715819.46 1640194.355 1802189.82 1987723.928 1719994.737 1.076790223 1.11538197 1.401950192 1.006159451 1.190167213 0.997572506 0.953604287 1.047787985 1.155656983 1 20.71397272 -6.260868769 24.99649235 1.029078595 1.160824378 0.258255363 0.107683497 74.05843963 3244290.161 0.037065573 0.03499243 5.48E-07 6.260868769 0.131745783 SRQT(ph)PSPDVVLR ddPTM_HeLa_A485_30min_R1 2 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.075)RQT(0.925)PSPDVVLR;S(0.026)RQT(0.965)PS(0.009)PDVVLR ; 112.34 0.00033629 0 133144 147345 130805 163765 192884 157138 213609 219497 140941 208782 TRUE FALSE FALSE 162761.4235 164575.716 179195.2128 172711.0673 173679.7917 165365.5027 167969.6921 165665.0166 169226.5659 156736.4897 1.038439892 1.050015324 1.14328969 1.101919965 1.108100558 1.05505427 1.07166935 1.056965209 1.079688375 1 17.25798157 -8.98797373 0.490505393 0.991764363 1.085704784 0.385501208 0.029978021 4.612246779 1.409224146 0.110824827 0.016878695 1.03E-09 8.98797373 0.093940421 SRQT(ph)PSPDVVLR ddPTM_HeLa_A486_30min_R1 2 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.284)RQT(0.714)PS(0.002)PDVVLR;S(0.283)RQT(0.715)PS(0.002)PDVVLR ; 105.39 0.00044213 0 262410 237000 195096 66136 250920 257190 278510 275730 208339 251310 TRUE FALSE FALSE 244016.4141 218219.2569 270642.3961 153967.9503 219447.2739 225460.5127 208823.8522 212952.2981 226397.9923 188380.3402 1.295339067 1.15839719 1.436680684 0.81732494 1.164916008 1.196836742 1.108522535 1.130438016 1.201813268 1 17.52328888 -5.229281132 24.99981501 1.102511016 1.282964745 0.36570292 0.124341152 817.7929923 635751.1723 0.033038378 0.057218828 5.90E-06 5.229281132 0.180453729 SRQTPS(ph)PDVVLR ddPTM_HeLa_A485_30min_R1 1 SRQTPSPDVVLR 12 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.212)RQT(0.057)PS(0.731)PDVVLR 115.73 0.00012684 676150000 169430 397930 284630 126820 402260 400250 498070 787780 253100 202670 TRUE FALSE FALSE 207119.119 444464.452 389926.4814 133747.8555 362209.582 421206.4711 391653.2756 594575.7198 303894.8484 152148.0989 1.361299422 2.92126195 2.562808766 0.8790636 2.380638238 2.768397859 2.574158196 3.907874789 1.997362114 1 17.21511678 -5.992550034 24.99706517 2.6319139 1.994817184 0.054913997 0.868504685 428.9717293 1439327.698 0.264678533 0.299532182 1.02E-06 5.992550034 -0.637096716 SRRERVR ddPTM_HeLa_A485_30min_R1 5 SRRERVR 7 3 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ;;;; ;;;; 59.205 0.018383 3768050000 3787230 4433570 4073220 4647530 6344980 3643000 6253000 5512090 3700180 6479400 FALSE FALSE TRUE 4629686.248 4952037.445 5580073.579 4901412.796 5713251.513 3833741.847 4916995.468 4160241.285 4442772.186 4864204.825 0.951786862 1.018056933 1.147170767 1.007649343 1.174549946 0.788153868 1.010852882 0.855276748 0.913360425 1 22.21377255 -6.259726264 24.99817213 0.91056634 1.059473252 0.422689141 0.085461241 149.4329977 2180570.308 0.027780782 0.026413167 5.50E-07 6.259726264 0.148906911 SRRERVR ddPTM_HeLa_A486_30min_R1 5 SRRERVR 7 3 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ;;;; ;;;; 59.205 0.018383 2776720000 4022130 3735110 2748230 1673560 5472390 3723200 4920020 4535220 3266760 4761710 FALSE FALSE TRUE 3740199.457 3439126.281 3812418.256 3896132.257 4785991.818 3263869.439 3688978.957 3502649.409 3549925.387 3569346.822 1.047866639 0.963516983 1.068099696 1.091553287 1.340859282 0.914416447 1.033516534 0.981313832 0.994558826 1 21.76722866 SRRS(ph)PLLK ddPTM_HeLa_A485_30min_R1 3 SRRSPLLK 8 2 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 S(0.068)RRS(0.932)PLLK;S(0.147)RRS(0.853)PLLK;S(0.05)RRS(0.95)PLLK ;; 83.862 0.0027792 1363300000 797510 1193220 833660 1029550 1883960 1590860 2161890 3100600 1113460 1602080 TRUE FALSE FALSE 974913.3481 1332756.699 1142065.525 1085791.71 1696386.327 1674154.97 1699984.54 2340172.988 1336921.209 1202710.94 0.810596558 1.108127194 0.949576068 0.902786924 1.410468859 1.391984486 1.413460611 1.945748484 1.111589796 1 20.19785852 -5.766847576 24.04171421 1.428547651 0.95506878 0.4234222 0.245064499 71.41582707 317473.3067 0.07270984 0.08491715 1.71E-06 5.766847576 -0.473478871 SRRS(ph)PLLK ddPTM_HeLa_A486_30min_R1 3 SRRSPLLK 8 2 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 S(0.005)RRS(0.995)PLLK;S(0.093)RRS(0.907)PLLK;S(0.126)RRS(0.874)PLLK ;; 86.014 0.0020738 962230000 745640 677090 345080 1376970 704390 1133200 1327830 1316090 462490 2224320 TRUE FALSE FALSE 693374.4865 623434.9225 478704.2176 3205655.748 616038.838 993397.3055 995592.8896 1016445.037 502579.0056 1667335.794 0.415857735 0.373910837 0.287107264 1.922621562 0.369474967 0.595799184 0.597116006 0.609622273 0.301426388 1 20.66911326 SRS(ph)APPNLWAAQR ddPTM_HeLa_A485_30min_R1 4 SRSAPPNLWAAQR 13 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(0.002)RS(0.998)APPNLWAAQR;S(0.019)RS(0.981)APPNLWAAQR;S(0.04)RS(0.96)APPNLWAAQR;SRS(1)APPNLWAAQR ;;; 234.04 4.51E-35 2393320000 386786 586540 562190 474214 834760 650150 921700 1239530 625140 749600 TRUE FALSE FALSE 472825.2113 655130.7508 770167.4757 500119.11 751648.3634 684190.8487 724771.2654 935533.324 750599.8639 562738.5154 0.840221876 1.164183245 1.368606297 0.888723797 1.335697385 1.215823744 1.28793613 1.662465423 1.333834176 1 19.10210518 -6.197511345 1.341112601 1.368421448 1.095376304 0.180173913 0.212976627 0.661247324 2.415180062 0.097388638 0.092729632 6.35E-07 6.197511345 -0.273045144 SRS(ph)APPNLWAAQR ddPTM_HeLa_A486_30min_R1 3 SRSAPPNLWAAQR 13 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(0.004)RS(0.996)APPNLWAAQR;S(0.258)RS(0.742)APPNLWAAQR;SRS(1)APPNLWAAQR ;; 242.9 2.34E-35 1822800000 435620 456730 469980 169667 679610 468360 590000 630710 410080 493910 TRUE FALSE FALSE 405085.2875 420537.0514 651968.8425 394993.3505 594366.9767 410578.5051 442375.7596 487111.1013 445626.0646 370231.7212 1.094139871 1.135875257 1.760975101 1.066881436 1.60539182 1.108977113 1.194861851 1.315692507 1.203640961 1 18.49806898 SRS(ph)DIDVNAAAGAK ddPTM_HeLa_A485_30min_R1 2 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.268)RS(0.732)DIDVNAAAGAK;S(0.061)RS(0.939)DIDVNAAAGAK ; 177.48 2.16E-13 10354060000 1860180 1674200 1532850 2207860 2374430 2160810 3028470 3244940 1865370 2716360 TRUE FALSE FALSE 2273970.623 1869983.126 2099915.002 2328469.801 2138023.412 2273946.67 2381412.644 2449113.377 2239732.649 2039221.443 1.115117062 0.917008368 1.029763104 1.141842545 1.048450829 1.115105315 1.167804827 1.201004131 1.098327333 1 20.95958702 -5.166663834 5.126293929 1.118597735 1.006981749 0.248279715 0.070086244 0.260375457 10.87623189 0.018825805 0.033363829 6.81E-06 5.166663834 -0.111615986 SRS(ph)DIDVNAAAGAK ddPTM_HeLa_A486_30min_R1 3 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.247)RS(0.753)DIDVNAAAGAK;S(0.192)RS(0.808)DIDVNAAAGAK;S(0.001)RS(0.999)DIDVNAAAGAK ;; 231.59 9.01E-29 12214240000 4192030 3959020 2415920 1571930 4058190 4237560 4995450 4779010 3265970 4702570 TRUE FALSE FALSE 3898190.345 3645292.837 3351428.925 3659532.481 3549173.969 3714772.932 3745535.574 3690933.748 3549066.909 3525015.863 1.105864625 1.034120974 0.9507557 1.038160571 1.006853332 1.05383155 1.062558501 1.047068692 1.006822961 1 21.74919832 -6.266159363 24.89633463 1.038779518 1.023905714 0 0.040065335 1922.946443 10142914.19 0.014397881 0.013003104 5.42E-07 6.266159363 -0.014873804 SRS(ph)DIDVNAAASAK ddPTM_HeLa_A485_30min_R1 3 SRSDIDVNAAASAK 14 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.25)RS(0.75)DIDVNAAASAK;S(0.02)RS(0.98)DIDVNAAASAK;S(0.229)RS(0.771)DIDVNAAASAK ;; 235.54 1.84E-35 14792900000 6210200 6599800 5192320 6996000 8163800 7319900 9640300 10157400 5748300 9717600 TRUE FALSE FALSE 7591637.565 7371589.199 7113175.238 7378173.765 7350983.407 7703158.645 7580571.151 7666281.724 6901931.083 7295181.159 1.040637292 1.010473769 0.975051213 1.01137636 1.007649193 1.055924243 1.039120343 1.050869273 0.946094543 1 22.79851237 -4.257306626 22.88871787 1.013427107 1.040637328 0.068219409 0.031782145 433.1483257 2398612.728 0.008068578 0.059616953 5.53E-05 4.257306626 0.027210221 SRS(ph)DIDVNAAASAK ddPTM_HeLa_A486_30min_R1 3 SRSDIDVNAAASAK 14 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.208)RS(0.792)DIDVNAAASAK;S(0.227)RS(0.773)DIDVNAAASAK;S(0.263)RS(0.737)DIDVNAAASAK ;; 272.64 3.89E-49 19138300000 7089500 7166400 4596100 3024740 6964000 7084400 8783700 8456100 5856500 8564600 TRUE FALSE FALSE 6592562.66 6598508.364 6375833.008 7041747.582 6090510.183 6210398.757 6585925.355 6530830.625 6364146.135 6419968.414 1.026883971 1.027810098 0.993125292 1.096850814 0.948682266 0.967356591 1.025850118 1.017268342 0.991304898 1 22.61413477 -5.78080862 24.99999897 0.993093105 1.032496186 0.31650523 0.03176179 345.8030752 446328.0223 0.010126106 0.011498788 1.66E-06 5.78080862 0.039403081 SRS(ph)DVDMDPSSATAVLGPAR ddPTM_HeLa_A485_30min_R1 1 SRSDVDMDPSSATAVLGPAR 20 1 M0QZR4;M0QYC1;M0QZH8;M0QYS3 M0QZR4 ARHGEF1 1 0 S(0.028)RS(0.972)DVDMDPSSATAVLGPAR 126.22 8.51E-06 114010000 56763 67474 63155 55667 89281 65900 75445 94549 68857 74159 TRUE FALSE FALSE 69389.73352 75364.49735 86518.6626 58707.94725 80391.87016 69350.4221 59325.55942 71360.7095 82675.96831 55672.5261 1.246390965 1.353710755 1.554063892 1.054522785 1.444013336 1.245684846 1.065616446 1.281793993 1.485040721 1 15.76467793 -5.258151639 24.9946444 1.240296878 1.381620741 0.158634289 0.165747269 611.4845691 4648714.397 0.045013162 0.073937397 5.52E-06 5.258151639 0.141323862 SRS(ph)DVDMDPSSATAVLGPAR ddPTM_HeLa_A486_30min_R1 2 SRSDVDMDPSSATAVLGPAR 20 1 M0QZR4;M0QYC1;M0QZH8;M0QYS3 M0QZR4 ARHGEF1 1 0 S(0.011)RS(0.321)DVDMDPS(0.301)S(0.301)AT(0.066)AVLGPAR;S(0.03)RS(0.969)DVDMDPSSATAVLGPAR ; 100.97 0.00015915 0 159066 166533 150006 77318 192732 129250 201775 180825 135824 153378 TRUE FALSE FALSE 147916.2948 153336.3186 208092.3405 180000.2114 168557.7554 113304.4491 151288.7608 139655.0949 147597.3337 114971.1505 1.286551402 1.33369387 1.809952668 1.565611988 1.466087403 0.985503308 1.315884552 1.214696855 1.283777131 1 16.81091237 -6.124564603 6.865156299 1.183970736 1.50993392 0.497827262 0.166093094 0.23582989 12.20476364 0.05722043 0.05733388 7.51E-07 6.124564603 0.325963185 SRS(ph)ESETSTMAAK ddPTM_HeLa_A485_30min_R1 1 SRSESETSTMAAK 13 1 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.135)RS(0.845)ES(0.019)ETSTMAAK 147 3.96E-08 1493500000 326300 333590 266920 411180 461990 362450 452160 476970 328940 510330 TRUE FALSE FALSE 398884.3093 372600.4487 365664.8155 433641.7222 415992.6535 381427.3215 355552.3222 359992.3596 394955.2408 383114.1229 1.041163156 0.97255733 0.954454022 1.131886548 1.085819156 0.995597131 0.92805851 0.939647844 1.030907547 1 18.54741468 -6.51632159 24.65125021 0.968510365 1.034897744 0.225881428 0.054544474 406.451607 1528044.696 0.022085166 0.017748663 3.05E-07 6.51632159 0.06638738 SRS(ph)ESETSTMAAKK ddPTM_HeLa_A485_30min_R1 1 SRSESETSTMAAKK 14 2 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.038)RS(0.558)ES(0.343)ET(0.047)S(0.009)T(0.006)MAAKK 50.966 0.036434 64497000 70877 79704 55709 64253 192020 139730 208630 340760 117880 101890 TRUE FALSE FALSE 86643.34413 89024.68947 76318.07734 67762.97869 172901.8146 147046.0467 164054.4961 257188.0757 141537.4347 76490.69815 1.132730466 1.163862948 0.997743245 0.88589829 2.260429291 1.922404296 2.144764006 3.362344467 1.85038754 1 16.2229967 -5.764655424 24.99953579 2.20252522 1.050164981 0.454864307 0.552257358 68.62504121 533449.0843 0.16590782 0.196026615 1.72E-06 5.764655424 -1.152360239 SRS(ph)FDYNYR ddPTM_HeLa_A485_30min_R1 4 SRSFDYNYR 9 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.014)RS(0.986)FDYNYR;S(0.001)RS(0.999)FDYNYR;S(0.001)RS(0.999)FDYNYR;S(0.001)RS(0.999)FDYNYR ;;; 166.24 4.54E-06 3402830000 1083130 1083940 1196760 1230830 1530970 1154780 1458780 1206190 1245400 1959520 TRUE FALSE FALSE 1324068.532 1210697.354 1639491.325 1298067.126 1378541.251 1215242.495 1147099.736 910370.0113 1495340.357 1471047.726 0.900085366 0.823017046 1.11450587 0.882409933 0.937115246 0.826106776 0.779784174 0.618858243 1.016513829 1 20.48841262 -6.274643386 6.734793547 0.819817238 0.932996949 0.07565157 0.127229609 0.308478857 73.80601881 0.043257804 0.039642137 5.31E-07 6.274643386 0.113179711 SRS(ph)FDYNYR ddPTM_HeLa_A486_30min_R1 4 SRSFDYNYR 9 1 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.005)RS(0.995)FDYNYR;S(0.001)RS(0.999)FDYNYR;SRS(1)FDYNYR;S(0.007)RS(0.993)FDYNYR ;;; 190.68 7.09E-09 3281290000 1572130 1896430 1605920 673111 2227890 1859140 1991610 2051480 1704880 1676770 TRUE FALSE FALSE 1461931.805 1746149.98 2227775.232 1567036.425 1948447.262 1629778.209 1493288.113 1584402.787 1852660.371 1256895.878 1.163128809 1.389255873 1.77244215 1.246751185 1.550205786 1.296669229 1.188076227 1.260568051 1.473996696 1 20.26143371 -6.463239269 7.983251719 1.25089274 1.431485229 0.189534502 0.188425976 0.581502834 71.69519731 0.066140036 0.05798729 3.44E-07 6.463239269 0.180592489 SRS(ph)FDYNYRR ddPTM_HeLa_A485_30min_R1 1 SRSFDYNYRR 10 2 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.03)RS(0.967)FDYNY(0.002)RR 51.726 0.032598 828010000 278920 371970 304020 179260 335160 346620 405160 545060 309620 291440 TRUE FALSE FALSE 340964.7917 415468.6558 416489.6493 189052.5199 301790.2936 364768.4872 318594.2561 411383.1804 371757.894 218789.3716 1.558415701 1.898943504 1.903610063 0.864084569 1.379364507 1.667213012 1.456168798 1.880270406 1.699158836 1 17.73918313 -10.12343214 4.312796541 0.999923148 1.587392442 0.260953687 0.297692357 107318651.9 20.53103231 103777.7867 0.076625457 7.53E-11 10.12343214 0.587469294 SRS(ph)FDYNYRR ddPTM_HeLa_A486_30min_R1 1 SRSFDYNYRR 10 2 O75494-2;O75494;Q5JRI1;O75494-5;O75494-4;O75494-6;O75494-3 O75494-2;O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.054)RS(0.946)FDYNYRR 151.74 1.47E-06 136240000 24700 23305 23958 10137 42107 21035 27511 32431 20052 26767 TRUE FALSE FALSE 22968.65755 21458.22692 33235.17922 23599.4483 36825.54743 18439.91557 20627.45682 25047.16926 21790.12351 20064.36898 1.144748563 1.069469314 1.656427833 1.176186917 1.835370326 0.919037902 1.028064069 1.248340742 1.086010905 1 14.29234816 SRS(ph)FER ddPTM_HeLa_A485_30min_R1 1 SRSFER 6 1 Q9UK58 Q9UK58 CCNL1 Cyclin-L1 1 0 S(0.121)RS(0.879)FER 76.827 0.0069798 0 29278 32651 33172 30742 28139 28899 30522 41049 30319 32372 TRUE FALSE FALSE 35790.79009 36469.25042 45443.7032 32421.35762 25337.38236 30412.10695 24000.72536 30981.66839 36403.7452 24302.25616 1.472735282 1.500652869 1.869937626 1.334088383 1.042593831 1.251410846 0.987592477 1.274847413 1.497957431 1 14.56880264 -5.498611264 10.46030185 1.184190676 1.603116763 0.559511207 0.173927308 0.452110147 191.7129087 0.049708136 0.071689506 3.17E-06 5.498611264 0.418926088 SRS(ph)FSSSAEEHS ddPTM_HeLa_A485_30min_R1 2 SRSFSSSAEEHS 12 1 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 S(0.001)RS(0.925)FS(0.071)S(0.003)S(0.001)AEEHS;SRS(0.996)FS(0.004)SSAEEHS ; 197.13 7.99E-16 935500000 378590 588820 574900 466330 775430 721280 959940 1073810 782320 918020 TRUE FALSE FALSE 462806.0394 657677.3769 787579.4336 491804.4271 698225.4665 759045.1055 754840.977 810456.4138 939324.4481 689174.5089 0.671536793 0.954297306 1.142786658 0.713613781 1.013133042 1.101383025 1.095282787 1.175981415 1.362970388 1 19.39450981 -6.342927587 1.473644443 1.183094054 0.892855579 0.421962134 0.150008748 0.413740601 1.800741725 0.070817971 0.060085911 4.54E-07 6.342927587 -0.290238475 SRS(ph)FTLDDESLK ddPTM_HeLa_A486_30min_R1 1 SRSFTLDDESLK 12 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(0.086)RS(0.914)FTLDDESLK 239.18 4.75E-28 366600000 712990 623010 394540 371880 698850 735710 983970 865770 498720 952120 TRUE FALSE FALSE 663013.0829 573640.4186 547316.4541 865755.4338 611193.7165 644945.5804 737770.2986 668653.0706 541949.4511 713702.9547 0.928976234 0.803752338 0.766868696 1.213047288 0.856369884 0.903661076 1.033721794 0.936878664 0.759348756 1 19.44496422 SRS(ph)FTSSYAISAANHVK ddPTM_HeLa_A485_30min_R1 2 SRSFTSSYAISAANHVK 17 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.05)RS(0.838)FT(0.05)S(0.05)S(0.012)YAISAANHVK;S(0.19)RS(0.741)FT(0.032)S(0.032)S(0.004)YAISAANHVK ; 177.32 2.60E-13 2509300000 831380 1093360 1021720 905830 1568350 1274180 1787350 2242550 1209580 1539140 TRUE FALSE FALSE 1016317.613 1221218.941 1399696.745 955313.1992 1412199.567 1340894.095 1405468.071 1692561.096 1452331.611 1155460.724 0.87957781 1.05691082 1.211375442 0.826781196 1.22219608 1.160484357 1.216370269 1.464836547 1.256928584 1 20.14003679 -5.898371308 10.03336809 1.242207841 1.013907311 0.361868855 0.144813443 0.357874959 32.52826112 0.045060017 0.051123708 1.26E-06 5.898371308 -0.228300531 SRS(ph)FTSSYAISAANHVK ddPTM_HeLa_A486_30min_R1 1 SRSFTSSYAISAANHVK 17 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.354)RS(0.644)FT(0.002)SSYAISAANHVK 162.73 4.52E-12 858550000 237450 192340 121840 32430 219780 219060 242060 338770 183360 216170 TRUE FALSE FALSE 220805.9812 177098.2779 169019.711 75498.67892 192213.143 192034.6044 181494.0278 261639.4663 199253.7924 162039.625 1.362666578 1.092931917 1.043076414 0.465927263 1.186210737 1.185108917 1.12005954 1.61466349 1.229660908 1 17.30598713 -6.413549062 1.95624428 1.291076541 1.000604943 0.129955615 0.259180645 0.59604949 4.515859455 0.115819919 0.095506131 3.86E-07 6.413549062 -0.290471599 SRS(ph)GEGEVSGLMR ddPTM_HeLa_A485_30min_R1 8 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(0.124)RS(0.876)GEGEVSGLMR;S(0.001)RS(0.999)GEGEVSGLMR;S(0.001)RS(0.999)GEGEVSGLMR;S(0.002)RS(0.998)GEGEVSGLMR;S(0.01)RS(0.99)GEGEVSGLMR;S(0.241)RS(0.759)GEGEVSGLMR;S(0.242)RS(0.758)GEGEVSGLMR;S(0.307)RS(0.693)GEGEVSGLMR ;;;;;;; 257.77 1.39E-41 15038240000 2555400 3441070 3516540 2791210 4403940 3362560 4511140 4834200 3103840 3732860 TRUE FALSE FALSE 3123839.914 3843473.203 4817454.481 2943686.735 3965468.27 3538618.442 3547298.086 3648604.87 3726752.218 2802326.7 1.114730811 1.371529309 1.719090954 1.05044381 1.415062801 1.262743006 1.265840306 1.30199126 1.329877854 1 21.41819373 -12.63724323 0.286702812 6.38E-10 1.342280622 0.230708293 0.171247071 149.562187 2.926538655 88.48986821 0.188921246 2.31E-13 12.63724323 1.342280622 SRS(ph)GEGEVSGLMR ddPTM_HeLa_A486_30min_R1 9 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(0.002)RS(0.998)GEGEVSGLMR;S(0.169)RS(0.831)GEGEVSGLMR;S(0.006)RS(0.994)GEGEVSGLMR;S(0.001)RS(0.999)GEGEVSGLMR;S(0.022)RS(0.978)GEGEVSGLMR;S(0.015)RS(0.985)GEGEVSGLMR;S(0.024)RS(0.976)GEGEVSGLMR;S(0.057)RS(0.508)GEGEVS(0.436)GLMR;S(0.015)RS(0.985)GEGEVSGLMR ;;;;;;;; 241.3 2.73E-35 14730510000 3143753 3026126 2502571 1293311 3804890 3102780 3804880 3859560 2606689 3761440 TRUE FALSE FALSE 2923392.149 2786324.755 3471633.512 3010893.368 3327645.217 2719990.55 2852858.78 2980822.442 2832638.901 2819550.941 1.036828988 0.988215788 1.231271782 1.067862731 1.180203971 0.964689274 1.011813172 1.057197584 1.00464186 1 21.42703398 -6.275214852 24.9949594 1.011502278 1.100027786 0.321651236 0.067559454 1088.23995 1974557.405 0.024231331 0.021492304 5.31E-07 6.275214852 0.088525508 SRS(ph)GS(ph)QGRTDS(ph)VEK ddPTM_HeLa_A486_30min_R1 1 SRSGSQGRTDSVEK 14 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 3 0 S(0.616)RS(0.692)GS(0.692)QGRT(0.004)DS(0.996)VEK 92.289 0.0012867 678770000 764010 726800 508790 562670 848060 996370 1192400 1173400 707400 1239800 TRUE FALSE FALSE 710456.8444 669205.721 705807.1139 1309924.196 741688.407 873447.9997 894048.9081 906242.4351 768718.0016 929346.0103 0.764469677 0.720082417 0.759466449 1.40951183 0.798075635 0.939852316 0.962019418 0.975139964 0.827160168 1 19.82585631 -5.0439985 24.99989489 0.983820917 0.741649473 0.33051006 0.156201222 493.5369051 280426.5116 0.04153682 0.071949571 9.04E-06 5.0439985 -0.242171443 SRS(ph)GSS(ph)PEVDSK ddPTM_HeLa_A485_30min_R1 1 SRSGSSPEVDSK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.032)RS(0.689)GS(0.302)S(0.973)PEVDS(0.004)K 135.72 0.00015784 0 397590 346290 285910 584620 492360 431910 622060 625420 368200 737730 TRUE FALSE FALSE 486032.5238 386785.6032 391680.0067 616556.3103 443338.9096 454524.1397 489151.7992 472034.7644 442094.3627 553827.4879 0.8775883 0.698386432 0.707223847 1.113264191 0.80050001 0.820696245 0.883220515 0.852313716 0.798252836 1 19.07907713 -14 0.214455186 1.760717488 0.81842796 0.155888897 0.109779469 300.5387296 3.00255883 99.09709297 0.23099606 1.00E-14 14 -0.942289528 SRS(ph)GSSQELDVKPSASPQER ddPTM_HeLa_A486_30min_R1 1 SRSGSSQELDVKPSASPQER 20 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.117)RS(0.784)GS(0.068)S(0.031)QELDVKPSASPQER 58.332 0.015886 237890000 68916 68654 47974 26971 75018 71393 100300 101380 45631 88230 TRUE FALSE FALSE 64085.34428 63213.60701 66550.81759 62789.85104 65608.54292 62585.25753 75203.87913 78297.98711 49586.33182 66136.63372 0.968984066 0.955803213 1.006262548 0.949395932 0.992015155 0.946302435 1.137098684 1.183882256 0.749755907 1 16.013162 SRS(ph)HS(ph)DNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 1 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.57)RS(0.715)HS(0.715)DNDRPNCSWNTQYSSAYYTSR 170.29 4.02E-14 891420000 36951 41059 32659 44376 46677 51235 58076 69459 47913 77688 TRUE FALSE FALSE 45170.62247 45860.49288 44740.92315 46800.14851 42029.67399 53917.58538 45667.58816 52424.07134 57528.69962 58321.81134 0.774506508 0.786335195 0.767138779 0.802446759 0.72065104 0.924484068 0.783027603 0.898875912 0.986401113 1 15.83174791 -7.427903747 0.843524341 1.012291863 0.777864283 0.732158924 0.048775487 0.294172133 0.396404261 0.043485533 0.017819582 3.73E-08 7.427903747 -0.234427581 SRS(ph)HS(ph)DNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A486_30min_R1 2 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.471)RS(0.828)HS(0.7)DNDRPNCSWNTQYSSAYYTSR;S(0.602)RS(0.694)HS(0.695)DNDRPNCS(0.009)WNTQYSSAYYTSR ; 252.89 4.44E-62 2046090000 156508 133120 115149 115357 180355 149229 213550 196793 143181 260530 TRUE FALSE FALSE 145537.5974 122571.0864 159737.7766 268556.9258 157733.1942 130818.6432 160117.5313 151987.5299 155592.0444 195291.5922 0.745232274 0.627631149 0.817944975 1.375158668 0.807680414 0.669863161 0.819889528 0.778259464 0.796716554 1 17.57527031 -11.63764603 2.000794012 4.214258175 0.829751648 0.0670822 0.193777178 10160234.7 324459.5305 149123036.2 0.052199424 2.30E-12 11.63764603 -3.384506527 SRS(ph)HS(ph)PMSNR ddPTM_HeLa_A485_30min_R1 2 SRSHSPMSNR 10 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.381)RS(0.622)HS(0.992)PMS(0.005)NR;S(0.185)RS(0.815)HS(0.998)PMS(0.002)NR ; 99.927 0.0018857 827620000 527360 721070 643210 435780 691750 644440 670730 713890 620570 884620 TRUE FALSE FALSE 644669.4126 805392.864 881160.1452 459585.5579 622876.9411 678181.8819 527423.0561 538807.3582 745112.7068 664100.5142 0.970740722 1.212757477 1.326847557 0.692042165 0.937925702 1.021203669 0.794191609 0.811334048 1.121987848 1 19.34104209 -5.253635106 24.99841614 0.904196255 1.174379467 0.408304605 0.142605015 571.4699853 1830510.806 0.038633513 0.065355297 5.58E-06 5.253635106 0.270183212 SRS(ph)HS(ph)PMSNR ddPTM_HeLa_A486_30min_R1 2 SRSHSPMSNR 10 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(0.14)RS(0.86)HS(0.927)PMS(0.073)NR;S(0.177)RS(0.825)HS(0.997)PMS(0.001)NR ; 77.192 0.010382 435960000 654430 596470 670060 128213 857220 640580 614220 608250 665150 529460 TRUE FALSE FALSE 608557.8365 549203.5449 929525.1768 298486.3435 749699.4743 561551.7525 460535.6594 469764.753 722805.7376 396879.7698 1.533355648 1.383803325 2.342082534 0.752082535 1.888983847 1.414916545 1.160390865 1.183644995 1.821220915 1 18.5983425 -6.02104373 0.82410264 1.308073347 1.62881904 0.077895128 0.427640903 1.850545026 2.779184081 0.249210623 0.306886556 9.53E-07 6.02104373 0.320745693 SRS(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A485_30min_R1 1 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.155)RS(0.794)HS(0.052)DNDRPNCSWNTQYSSAYYTSR 272.55 5.47E-76 3099300000 142640 246250 259970 108820 225150 210440 216040 276030 178620 160190 TRUE FALSE FALSE 174369.7759 275046.7954 356143.7213 114764.5611 202733.2755 221458.313 169881.2891 208333.2097 214467.3956 120257.5811 1.449969094 2.287147246 2.961507441 0.954322879 1.685825323 1.841533074 1.412645154 1.732391487 1.783400212 1 16.87576832 -9.68762462 0.106025611 6.16E-13 2.541685703 0.202206384 0.501646955 70.60694201 1.714647922 31.89830537 11.10085772 2.05E-10 9.68762462 2.541685703 SRS(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_A486_30min_R1 1 SRSHSDNDRPNCSWNTQYSSAYYTSR 26 2 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.174)RS(0.755)HS(0.071)DNDRPNCSWNTQYSSAYYTSR 263.16 1.33E-62 2616800000 232290 242180 289540 37591 359200 224820 336290 311400 247580 229840 TRUE FALSE FALSE 216007.6705 222988.7748 401657.6422 87513.74774 314145.7866 197083.9942 252146.6851 240501.0178 269040.4337 172286.568 1.253769653 1.294289958 2.331334629 0.507954559 1.823391053 1.14393128 1.463530721 1.395935972 1.561586819 1 17.3944507 -10.14840224 4.664936353 0.999955247 1.420221827 0.074516783 0.443537449 0.000191821 3.50E-05 0.399028755 0.096768406 7.11E-11 10.14840224 0.42026658 SRS(ph)LGPGAGPR ddPTM_HeLa_A485_30min_R1 1 SRSLGPGAGPR 11 1 H3BUV2;P78549-3;P78549-2;P78549 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 S(0.19)RS(0.81)LGPGAGPR 70.598 0.0064108 149410000 28045 68903 82976 18172 78143 59383 50188 73700 56658 23352 TRUE FALSE FALSE 34283.5135 76960.60647 113672.2753 19164.69035 70362.80854 62492.20206 39464.9238 55624.95944 68028.7409 17530.77616 1.955618689 4.390028471 6.484155309 1.093202615 4.013673319 3.564713934 2.251179494 3.172988973 3.880532172 1 14.09760225 -9.878152101 0.304070874 2.87E-15 3.752500796 0.2005041 1.418971153 21.76195052 1.791506896 24.15438766 1.584535813 1.32E-10 9.878152101 3.752500796 SRS(ph)LGPGAGPR ddPTM_HeLa_A486_30min_R1 1 SRSLGPGAGPR 11 1 H3BUV2;P78549-3;P78549-2;P78549 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 S(0.266)RS(0.734)LGPGAGPR 50.806 0.010911 0 35763 56760 88929 10455 92857 29734 34065 33870 38762 24437 TRUE FALSE FALSE 33256.19838 52262.13088 123364.6904 24339.76837 81210.0092 26065.72139 25541.5767 26158.54038 42121.92137 18317.81614 1.815511092 2.853076506 6.734683297 1.328748371 4.433389252 1.422971013 1.394357084 1.428038156 2.299505631 1 14.16095989 -6.278736577 23.94915843 1.528562875 3.467374076 0.314024395 1.421310187 602.7731984 834577.5371 0.494683534 0.437463686 5.26E-07 6.278736577 1.9388112 SRS(ph)LMK ddPTM_HeLa_A486_30min_R1 1 SRSLMK 6 1 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 S(0.014)RS(0.986)LMK 63.565 0.010997 0 60794 48503 34928 24597 54829 76904 77468 84969 38522 78763 TRUE FALSE FALSE 56532.65454 44659.44564 48453.057 57263.05906 47951.83556 67416.36638 58084.68703 65623.41356 41861.11798 59040.23214 0.957527647 0.756423951 0.820678633 0.969898948 0.812189143 1.141871635 0.983815356 1.111503312 0.709026988 1 15.84941077 -6.229760619 24.92463438 0.995873224 0.860953133 0.204426005 0.123794671 988.9553497 778103.9296 0.039540734 0.039536805 5.89E-07 6.229760619 -0.134920091 SRS(ph)PAYSR ddPTM_HeLa_A485_30min_R1 4 SRSPAYSR 8 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 S(0.004)RS(0.996)PAYSR;S(0.024)RS(0.975)PAYSR;S(0.406)RS(0.594)PAYSR;S(0.162)RS(0.837)PAYS(0.001)R ;;; 78.692 0.0049348 852152000 55893.3 75912 72219 50704 78909 86567 79932.3 99177 69303 79960.8 TRUE FALSE FALSE 68326.57176 84789.24805 98935.81338 53473.83113 71052.54289 91099.51426 62854.11112 74853.68525 83211.47642 60028.04413 1.138244178 1.412493932 1.64815987 0.89081415 1.183655805 1.517615901 1.047079112 1.24697858 1.386210023 1 15.87334904 -11.32227865 1.738224361 8.17E-05 1.275310483 0.129335216 0.213720487 2576229.236 311280.372 10079782.1 0.059482699 4.76E-12 11.32227865 1.275228825 SRS(ph)PAYSR ddPTM_HeLa_A486_30min_R1 4 SRSPAYSR 8 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 S(0.149)RS(0.851)PAYSR;S(0.01)RS(0.99)PAYSR;S(0.008)RS(0.992)PAYSR;S(0.184)RS(0.816)PAYSR ;;; 94.767 0.0015232 855050000 82640 74196 75033.5 25100.7 67665 76818 78444 72942.8 64437.6 66308.3 TRUE FALSE FALSE 76847.36275 68316.43874 104088.4807 58435.69812 59177.82475 67340.97619 58816.4815 56335.31677 70023.10305 49704.27009 1.546091767 1.374458143 2.094155703 1.175667564 1.190598406 1.354832816 1.183328543 1.13341 1.408794515 1 15.60108218 -5.332491205 24.99996008 1.216752225 1.641866025 0.530572835 0.199652023 120.053655 42241.03482 0.054265632 0.080488951 4.65E-06 5.332491205 0.4251138 SRS(ph)PES(ph)QVIGENTK ddPTM_HeLa_A485_30min_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.39)RS(0.66)PES(0.95)QVIGENTK 143.67 3.95E-07 728370000 463340 254790 212180 831570 471090 287980 543560 339110 339440 1028700 TRUE FALSE FALSE 566408.3845 284585.4741 290674.2115 876996.5635 424186.6255 303058.1875 427423.9655 255942.7408 407562.4945 772264.0218 0.733438783 0.368508005 0.376392274 1.135617533 0.54927669 0.39242821 0.553468702 0.331418703 0.527750203 1 19.55873464 -10.47293361 6.236555354 1.000233681 0.547411983 0.260203157 0.226483096 0.000756315 6.39E-05 0.225381032 0.05463534 3.37E-11 10.47293361 -0.452821698 SRS(ph)PES(ph)QVIGENTK ddPTM_HeLa_A486_30min_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.066)RS(0.937)PES(0.987)QVIGENT(0.01)K 142.62 4.20E-07 1363200000 2448300 2632400 1164600 1406200 2082500 3542400 3829000 3399900 2311100 4281700 TRUE FALSE FALSE 2276686.813 2423799.037 1615564.309 3273704.665 1821293.431 3105374.704 2870943.701 2625816.989 2511428.009 3209534.451 0.709351106 0.755187107 0.503364065 1.019993621 0.567463431 0.967546774 0.894504716 0.818130177 0.782489812 1 21.61393262 -5.775893987 0.970996684 0.873472824 0.684372953 0.218541844 0.147470536 0.920375686 1.866679729 0.067488067 0.104407576 1.68E-06 5.775893987 -0.189099871 SRS(ph)PES(ph)QVIGENTKQP ddPTM_HeLa_A485_30min_R1 1 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.142)RS(0.877)PES(0.981)QVIGENTKQP 100.02 0.01288 541610000 388770 412750 287720 536980 644330 531680 811750 895250 388940 780240 TRUE FALSE FALSE 475250.5453 461017.5221 394159.601 566313.8577 580178.2428 559517.9427 638312.9811 675688.5338 466996.6904 585740.5273 0.811367019 0.787067824 0.672925268 0.966834001 0.990503842 0.955231739 1.089753827 1.153562887 0.797275703 1 19.15990219 -5.375238935 5.328969231 1.005223079 0.761264733 0.575038689 0.093038421 0.157670415 6.330885019 0.026478007 0.039704377 4.21E-06 5.375238935 -0.243958346 SRS(ph)PES(ph)QVIGENTKQP ddPTM_HeLa_A486_30min_R1 3 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.082)RS(0.932)PES(0.986)QVIGENTKQP;S(0.175)RS(0.825)PES(1)QVIGENTKQP;S(0.148)RS(0.862)PES(0.99)QVIGENTKQP ;; 179.7 4.83E-17 5791640000 3687700 3248200 1859920 2065250 3513400 3838400 5352600 5139000 2505800 5965200 TRUE FALSE FALSE 3429211.273 2990800.802 2580130.834 4808006.372 3072716.611 3364857.234 4013322.866 3968961.884 2723004.762 4471475.093 0.76690828 0.66886223 0.577020062 1.075261803 0.687181869 0.752516153 0.897538907 0.887618023 0.608972365 1 22.09231941 -14 0.111910094 1.6404508 0.660989348 0.169556751 0.144615173 304.6185674 2.252212096 45.96125064 1.732311657 1.00E-14 14 -0.979461452 SRS(ph)PESQVIGENTK ddPTM_HeLa_A485_30min_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.135)RS(0.851)PES(0.014)QVIGENTK 104.41 0.0014552 0 54805 42146 48550 85920 77446 49098 64757 51777 54438 124830 TRUE FALSE FALSE 66996.18317 47074.60808 66510.66533 90613.59204 69735.20431 51668.69536 50921.13793 39078.60957 65363.20727 93712.17833 0.714914373 0.502331809 0.709733425 0.966935074 0.74414239 0.551355184 0.54337802 0.417006736 0.697488933 1 16.51594892 -8.031413183 23.74360304 1.000000006 0.643180089 0.345610937 0.14627738 2804.214846 2119558.951 0.156496611 0.040407251 9.30E-09 8.031413183 -0.356819917 SRS(ph)PESQVIGENTK ddPTM_HeLa_A486_30min_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.012)RS(0.839)PES(0.149)QVIGENTK 157.91 1.96E-06 0 155340 143630 70586 51938 128380 167970 152320 142730 121360 181100 TRUE FALSE FALSE 144451.4682 132248.2357 97918.78956 120914.2888 112277.3833 147247.5692 114207.9249 110233.4948 131879.5825 135751.3812 1.064088386 0.974194402 0.721309711 0.89070393 0.827080964 1.084685606 0.841302121 0.812024848 0.971478753 1 17.05060735 SRS(ph)PESQVIGENTKQP ddPTM_HeLa_A486_30min_R1 1 SRSPESQVIGENTKQP 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.029)RS(0.61)PES(0.361)QVIGENTKQP 98.227 0.00017855 0 98061 90368 49303 34099 89813 73773 95042 91583 66617 120930 TRUE FALSE FALSE 91187.43029 83206.91057 68394.44198 79384.19527 78547.81607 64671.63733 71261.48635 70731.55014 72391.4152 90648.34088 1.005947041 0.917908808 0.754502965 0.875737984 0.866511348 0.713434319 0.786131171 0.780285105 0.798596141 1 16.46799299 -4.547952636 4.265985219 0.812648434 0.991191012 0.371252933 0.075938939 0.176819978 7.346911513 0.018780461 0.062660819 2.83E-05 4.547952636 0.178542578 SRS(ph)PHEAGFCVYLK ddPTM_HeLa_A485_30min_R1 2 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(0.158)RS(0.842)PHEAGFCVYLK;S(0.103)RS(0.897)PHEAGFCVYLK ; 162.76 3.58E-12 1530600000 771590 951660 778270 725250 1101640 1001590 1280520 1428240 839270 1215730 TRUE FALSE FALSE 943227.5335 1062948.359 1066184.46 764868.5711 991956.8535 1054031.704 1006926.441 1077961.901 1007703.791 912670.8849 1.033480468 1.164656807 1.168202555 0.838055189 1.086872464 1.15488696 1.10327442 1.181106923 1.10412615 1 19.79973518 -6.000259113 25 1.119795798 1.054435783 0.067908428 0.096026668 25.55500825 2466057.811 0.030898434 0.034641008 9.99E-07 6.000259113 -0.065360015 SRS(ph)PHEAGFCVYLK ddPTM_HeLa_A486_30min_R1 2 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(0.248)RS(0.752)PHEAGFCVYLK;S(0.437)RS(0.563)PHEAGFCVYLK ; 166.28 2.78E-12 1303690000 1209070 1102790 773810 539250 1277600 1243240 1649110 1417960 1029870 1725710 TRUE FALSE FALSE 1124320.437 1015400.904 1073449.955 1255401.252 1117351.495 1089861.689 1236485.235 1095121.462 1119139.961 1293580.984 0.869153498 0.784953487 0.829828182 0.970485241 0.863766172 0.842515237 0.955862255 0.846581293 0.865148742 1 20.30293894 -14 0.147233584 1.436469214 0.829902854 0.364159781 0.05225062 159.5048326 1.405412184 20.58860171 0.291987848 1.00E-14 14 -0.606566359 SRS(ph)PIER ddPTM_HeLa_A485_30min_R1 2 SRSPIER 7 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 S(0.073)RS(0.927)PIER;S(0.175)RS(0.825)PIER ; 85.622 0.0038763 2553440000 484340 603900 446800 521810 474080 624290 529700 735640 502650 677690 TRUE FALSE FALSE 592079.762 674520.8518 612089.9129 550315.159 426878.9306 656976.8591 416525.2677 555223.1366 603527.2444 508754.355 1.163783182 1.325828163 1.203114837 1.081691299 0.839066883 1.291343951 0.818715877 1.091338347 1.186284183 1 18.95660971 -5.253371964 3.682635628 1.03831715 1.246340507 0.279983753 0.138749211 0.280213024 8.452021638 0.038015969 0.064962863 5.58E-06 5.253371964 0.208023358 SRS(ph)PIER ddPTM_HeLa_A486_30min_R1 2 SRSPIER 7 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;Q14135-6;E7ERW0;G5E9M9;E7EWF5;F8W708;E7EQU6;Q14135-5;F8WBN7;E7EUJ2;C9JX59;C9JBN2 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 S(0.25)RS(0.75)PIER;S(0.038)RS(0.962)PIER ; 99.568 0.0022563 1883340000 247432 179617 244602 100898 225514 339735 248573 196903 254545 296710 TRUE FALSE FALSE 230088.2945 165383.4948 339318.4451 234895.6431 197227.9313 297821.9499 186377.4063 152072.4853 276609.1655 222411.8847 1.034514387 0.743591085 1.525630905 1.056129008 0.88676885 1.339055915 0.837983125 0.683742622 1.243679787 1 17.76287436 SRS(ph)PIIHS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SRSPIIHSPK 10 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 0 S(0.399)RS(0.602)PIIHS(1)PK 65.467 0.021367 843720000 1723500 1446800 755750 827850 1451400 1625700 2177300 2025200 1182400 2503600 TRUE FALSE FALSE 1602691.55 1332150.299 1048396.64 1927276.637 1269351.878 1425137.663 1632516.511 1564106.17 1284891.384 1876682.264 0.854002609 0.709843283 0.558643655 1.026959477 0.676380814 0.759392088 0.869894996 0.833442187 0.684661122 1 20.83975298 -14 0.301953605 2.874067936 0.763938624 0.223164645 0.123699704 421.7694767 3.896110783 501.1148967 0.12153516 1.00E-14 14 -2.110129312 SRS(ph)PITTNHRPS(ph)PDPEQRPLR ddPTM_HeLa_A485_30min_R1 1 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 2 0 S(0.435)RS(0.564)PIT(0.199)T(0.073)NHRPS(0.729)PDPEQRPLR 77.873 0.0022075 468510000 28185 40927 46007 34991 52690 35689 55667 47978 36645 52136 TRUE FALSE FALSE 34454.65601 45713.05663 63026.90381 36902.46973 47443.99859 37557.62085 43773.29069 36211.32027 43999.31537 39139.45469 0.880304958 1.167953335 1.61031635 0.942845781 1.212178324 0.959584674 1.118392963 0.925187143 1.124167818 1 15.25633604 SRS(ph)PITTNHRPS(ph)PDPEQRPLR ddPTM_HeLa_A486_30min_R1 1 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 2 0 S(0.432)RS(0.567)PIT(0.121)T(0.028)NHRPS(0.851)PDPEQRPLR 89.773 0.00067386 1200700000 70608 71030 67725 21500 76083 56365 77990 63393 60294 78090 TRUE FALSE FALSE 65658.74382 65401.32411 93949.93374 50053.08655 66539.96069 49411.25938 58476.07711 48959.79776 65520.33247 58535.75572 1.121686105 1.117288456 1.605000783 0.855085681 1.13674044 0.844120978 0.998980476 0.8364084 1.119321544 1 15.83703052 -5.296621133 24.97869412 0.966175941 1.264921803 0.440880334 0.160252938 530.5721248 376699.7397 0.043630971 0.064718407 5.05E-06 5.296621133 0.298745862 SRS(ph)PITTNHRPSPDPEQRPLR ddPTM_HeLa_A485_30min_R1 2 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 1 0 S(0.456)RS(0.544)PITTNHRPSPDPEQRPLR;S(0.162)RS(0.837)PITTNHRPSPDPEQRPLR ; 112.86 6.60E-05 1969060000 706380 999030 977770 658600 1066010 857980 1038630 994250 783170 938770 TRUE FALSE FALSE 863511.794 1115857.868 1339487.811 694577.6503 959874.3014 902902.5061 816718.2157 750408.6286 940345.0353 704751.9158 1.225270588 1.583334281 1.900651536 0.985563338 1.36200311 1.281163607 1.158873353 1.064784092 1.334292273 1 19.42675597 -5.273664726 24.98888691 1.184452649 1.571110371 0.468239613 0.194996353 658.2178437 1345410.9 0.054715261 0.081824794 5.33E-06 5.273664726 0.386657722 SRS(ph)PITTNHRPSPDPEQRPLR ddPTM_HeLa_A486_30min_R1 4 SRSPITTNHRPSPDPEQRPLR 21 3 P41212 P41212 ETV6 Transcription factor ETV6 1 0 S(0.46)RS(0.538)PIT(0.001)TNHRPSPDPEQRPLR;S(0.133)RS(0.865)PIT(0.001)T(0.001)NHRPSPDPEQRPLR;S(0.451)RS(0.549)PITTNHRPSPDPEQRPLR;S(0.457)RS(0.541)PIT(0.001)T(0.001)NHRPSPDPEQRPLR ;;; 122.79 2.67E-06 3525450000 1812540 1700830 1613850 369845 2070460 1543180 1782260 1845860 1544170 1612150 TRUE FALSE FALSE 1685490.306 1566050.036 2238775.94 861017.8509 1810763.601 1352798.142 1336319.697 1425597.973 1678019.899 1208457.147 1.394745615 1.295908623 1.852590261 0.712493491 1.498409443 1.119442378 1.105806442 1.179684341 1.388563842 1 20.20473488 -5.251621928 24.99944935 1.163189259 1.492564159 0.330742655 0.240054823 878.3175442 2236569.757 0.06234717 0.106320059 5.60E-06 5.251621928 0.3293749 SRS(ph)PLAR ddPTM_HeLa_A485_30min_R1 4 SRSPLAR 7 1 Q8N3Y1 Q8N3Y1 FBXW8 F-box/WD repeat-containing protein 8 1 0 S(0.17)RS(0.83)PLAR;S(0.17)RS(0.83)PLAR;S(0.123)RS(0.877)PLAR;S(0.156)RS(0.844)PLAR ;;; 76.943 0.0074219 1162162000 150732 228440 190315 157015 227079 192775 209341 270958 181207 216860 TRUE FALSE FALSE 184261.8134 255154.0708 260720.4382 165592.3319 204470.2174 202868.4009 164613.5852 204505.1257 217573.5828 162800.793 1.131823807 1.567277813 1.601469092 1.017146961 1.255953449 1.246114329 1.011135033 1.256167872 1.336440559 1 17.3127482 -5.26134952 24.99999999 1.172426888 1.446898993 0.37019811 0.162429341 8.627828229 2400026.959 0.044568841 0.071320494 5.48E-06 5.26134952 0.274472105 SRS(ph)PLAR ddPTM_HeLa_A486_30min_R1 5 SRSPLAR 7 1 Q8N3Y1 Q8N3Y1 FBXW8 F-box/WD repeat-containing protein 8 1 0 S(0.05)RS(0.95)PLAR;S(0.05)RS(0.95)PLAR;S(0.03)RS(0.97)PLAR;S(0.155)RS(0.845)PLAR;S(0.155)RS(0.845)PLAR ;;;; 93.556 0.0029179 955594000 208284 202249 177718 67905.1 216418 205583 202214 204022 188201 208149 TRUE FALSE FALSE 193684.3672 186222.0527 246535.1691 158086.5045 189272.8364 180220.2597 151617.9184 157570.6444 204514.4142 156027.1356 1.241350528 1.193523498 1.580078799 1.013198787 1.213076403 1.155057157 0.971740703 1.009892566 1.310761833 1 17.25143743 -5.295909934 24.99935508 1.098789542 1.323838444 0.389607318 0.138468213 644.7587263 467602.1773 0.038745647 0.057472548 5.06E-06 5.295909934 0.225048903 SRS(ph)PLELEPEAK ddPTM_HeLa_A485_30min_R1 2 SRSPLELEPEAK 12 1 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 S(0.034)RS(0.966)PLELEPEAK;S(0.003)RS(0.997)PLELEPEAK ; 132.65 0.00031072 585563000 589160 670240 513854 819500 783190 753570 1039840 1047120 589680 1043520 TRUE FALSE FALSE 720216.6094 748618.7377 703949.9778 864267.2099 705212.8537 793025.76 817669.6893 790312.1782 708023.3671 783389.6686 0.919359341 0.95561477 0.898594922 1.1032405 0.900206988 1.012300509 1.043758582 1.008836611 0.903794619 1 19.57937058 SRS(ph)PLELEPEAK ddPTM_HeLa_A486_30min_R1 1 SRSPLELEPEAK 12 1 A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466;A0A087WTQ7;A0A087WV56;Q92466-4 A0A087WW71 DDB2 DNA damage-binding protein 2 1 0 S(0.069)RS(0.931)PLELEPEAK 136.14 0.00018847 304650000 300800 316030 190800 129690 335230 364940 428160 405560 289550 449390 TRUE FALSE FALSE 279715.4733 290986.6318 264682.8698 301924.8742 293182.3275 319917.4132 321029.8394 313222.8413 314648.4271 336859.819 0.830361645 0.863821137 0.78573595 0.896292336 0.870339266 0.949704878 0.953007219 0.929831413 0.934063398 1 18.36178883 -5.955918037 1.294233779 0.951872316 0.832347902 0.75393637 0.03034478 0.215757873 0.75381698 0.012482247 0.014741236 1.11E-06 5.955918037 -0.119524414 SRS(ph)PLHPMSEIPR ddPTM_HeLa_A485_30min_R1 4 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.278)RS(0.722)PLHPMSEIPR;S(0.084)RS(0.916)PLHPMSEIPR;S(0.345)RS(0.655)PLHPMSEIPR;S(0.171)RS(0.829)PLHPMSEIPR ;;; 105.02 0.00021134 3090730000 684229 914230 876460 708250 1089850 803180 1011640 1050650 855450 979010 TRUE FALSE FALSE 836433.3805 1021141.246 1200699.027 746939.9041 981340.7073 845233.2628 795494.8497 792976.4401 1027130.968 734960.8243 1.138065258 1.389381872 1.633691194 1.016298936 1.335228593 1.150038526 1.082363608 1.078937018 1.397531589 1 19.48730783 -5.278420432 24.99406586 1.159490113 1.387279724 0.30156029 0.163965284 1000.412851 1472485.086 0.045623924 0.067866198 5.27E-06 5.278420432 0.227789611 SRS(ph)PLHPMSEIPR ddPTM_HeLa_A486_30min_R1 4 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.448)RS(0.552)PLHPMSEIPR;S(0.078)RS(0.922)PLHPMSEIPR;S(0.471)RS(0.528)PLHPMSEIPR;S(0.353)RS(0.647)PLHPMSEIPR ;;; 114.96 0.00010338 3031570000 947890 1010930 877920 222917 1069210 878740 999920 1000070 872600 975230 TRUE FALSE FALSE 881447.8059 930820.2251 1217874.136 518962.0416 935099.7118 770329.9932 749729.4399 772375.8924 948237.6706 731026.0603 1.205767966 1.273306487 1.665979097 0.709909085 1.27916057 1.053765433 1.025585106 1.056564101 1.297132513 1 19.47956331 -5.253808721 24.99927292 1.070059399 1.370846678 0.377365382 0.18873155 653.7227899 2141696.537 0.049857788 0.084262817 5.57E-06 5.253808721 0.300787279 SRS(ph)PLHPMSEIPRR ddPTM_HeLa_A485_30min_R1 2 SRSPLHPMSEIPRR 14 2 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.155)RS(0.843)PLHPMS(0.002)EIPRR;S(0.368)RS(0.632)PLHPMSEIPRR ; 149.52 2.75E-08 940400000 114838 260374 195149 92411 243780 191457 197321 279840 162630 117684 TRUE FALSE FALSE 140383.3169 290822.4743 267342.7359 97459.17893 219508.4072 201481.3925 155161.7564 211208.8012 195268.3493 88347.54461 1.588989457 3.291800305 3.026034703 1.103133985 2.484601108 2.280554523 1.756265633 2.390658418 2.210229499 1 16.43090242 -10.61432489 0.269447445 2.64E-12 2.41802061 0.265636822 0.61416212 33.95133968 1.648816809 24.68950755 0.854143435 2.43E-11 10.61432489 2.41802061 SRS(ph)PLLVTVVESDPRPQGQPR ddPTM_HeLa_A485_30min_R1 1 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 S(0.059)RS(0.862)PLLVT(0.028)VVES(0.051)DPRPQGQPR 90.397 0.00078161 915370000 10912 15696 0 15700 26323 0 17276 0 0 0 TRUE FALSE FALSE 13339.33675 17531.51066 0 16557.65125 23702.18969 0 13584.84147 0 0 0 0 SRS(ph)PLLVTVVESDPRPQGQPR ddPTM_HeLa_A486_30min_R1 1 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 S(0.014)RS(0.626)PLLVT(0.055)VVES(0.305)DPRPQGQPR 73.655 0.0035321 864350000 0 11873 9968.3 0 0 0 0 9819 0 0 TRUE FALSE FALSE 0 10932.14024 13828.29272 0 0 0 0 7583.428047 0 0 0 SRS(ph)PNRFDAHDPR ddPTM_HeLa_A486_30min_R1 2 SRSPNRFDAHDPR 13 2 Q96T58;A0A669KB49;F6WRY4 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.205)RS(0.795)PNRFDAHDPR;S(0.207)RS(0.793)PNRFDAHDPR ; 79.393 0.0025312 5737300000 1757700 1671480 1561680 571750 2187930 1629430 1891400 2047380 1533240 1856710 TRUE FALSE FALSE 1634494.307 1539025.837 2166404.319 1331062.895 1913499.418 1428407.493 1418151.715 1581236.268 1666142.478 1391777.731 1.174393203 1.105798579 1.55657349 0.956376054 1.374859919 1.026318687 1.018949853 1.136127007 1.197132589 1 20.4084974 -6.286494878 24.93498603 1.080666326 1.229041798 0.198356551 0.15842091 1345.303279 1338827.316 0.053902714 0.047557723 5.17E-07 6.286494878 0.148375472 SRS(ph)PPPVSK ddPTM_HeLa_A486_30min_R1 2 SRSPPPVSK 9 1 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.454)RS(0.546)PPPVSK;S(0.245)RS(0.755)PPPVSK ; 76.073 0.0052657 830340000 1642960 1489400 813248 514850 1336030 1452310 1429010 1384430 1265810 1974850 TRUE FALSE FALSE 1527796.988 1371374.52 1128159.405 1198596.819 1168452.659 1273138.758 1071456.583 1069225.511 1375531.43 1480334.706 1.032061859 0.926394899 0.762097518 0.809679604 0.789316534 0.860034392 0.723793463 0.722286323 0.929202987 1 20.49749198 -4.529543718 3.576313185 0.810798612 1.02015401 0.369052131 0.08437385 0.20656523 5.467289276 0.0207202 0.081166997 2.95E-05 4.529543718 0.209355398 SRS(ph)PPPVSKR ddPTM_HeLa_A485_30min_R1 1 SRSPPPVSKR 10 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.428)RS(0.572)PPPVSKR 72.496 0.0055443 64463000 79138 130500 92910 61928 113290 157660 160290 199020 77543 115720 TRUE FALSE FALSE 96741.97508 145760.8398 127281.2753 65310.96983 102010.4498 165914.8338 126042.7321 150210.0329 93105.16883 86873.13367 1.113600615 1.677858662 1.465139681 0.751797099 1.174246231 1.909852066 1.450882761 1.729073496 1.071737198 1 16.40662246 SRS(ph)PPPVSKR ddPTM_HeLa_A486_30min_R1 1 SRSPPPVSKR 10 2 Q01130-2;Q01130 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.124)RS(0.876)PPPVSKR 51.875 0.020436 39505000 104010 58872 47318 30671 82511 51635 73930 75895 59345 108540 TRUE FALSE FALSE 96719.43611 54206.76831 65640.79682 71403.63803 72161.701 45264.79869 55431.93205 58615.36528 64489.07238 81360.87752 1.188770808 0.666251028 0.806785753 0.87761637 0.886933661 0.556345999 0.681309417 0.720436739 0.79263 1 16.31204762 -4.252997686 24.56746975 0.765448588 1.188771081 0.50738154 0.121437937 703.2503553 2046579.202 0.030512636 0.339345081 5.58E-05 4.252997686 0.423322493 SRS(ph)PPRPK ddPTM_HeLa_A486_30min_R1 1 SRSPPRPK 8 2 Q8WUQ7-2;Q8WUQ7 Q8WUQ7-2 CACTIN Cactin 1 0 S(0.219)RS(0.781)PPRPK 42.21 0.03257 306460000 187500 167270 119400 83990 172460 198110 233270 216230 158290 248950 TRUE FALSE FALSE 174357.2183 154014.916 165634.8776 195532.9646 150828.4587 173669.2024 174903.3787 166999.1493 172010.7046 186611.2996 0.934333658 0.825324706 0.88759297 1.047808815 0.808249334 0.930646766 0.937260386 0.894903736 0.92175932 1 17.50967682 -14 0.21411862 1.446784273 0.896381858 0.162010861 0.062404276 280.4634087 2.801607656 53.90042926 0.126763795 1.00E-14 14 -0.550402415 SRS(ph)PQAFR ddPTM_HeLa_A486_30min_R1 3 SRSPQAFR 8 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 S(0.147)RS(0.853)PQAFR;S(0.206)RS(0.794)PQAFR;S(0.006)RS(0.994)PQAFR ;; 100.69 0.0010292 503740000 125722 134311 129734 45196 152251 126662 118689 133879 109186 115558 TRUE FALSE FALSE 116909.537 123667.7072 179970.4792 105218.5721 133154.2599 111035.7302 88991.75684 103397.6743 118650.3304 86621.52464 1.349659193 1.427678717 2.077664644 1.214693144 1.537195985 1.281849179 1.027363086 1.193671835 1.369755738 1 16.40243795 -6.229303603 1.621877342 1.159861679 1.557015395 0.36246392 0.232090111 0.434719361 2.271858323 0.10036517 0.093493582 5.90E-07 6.229303603 0.397153716 SRS(ph)PQWR ddPTM_HeLa_A485_30min_R1 3 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.349)RS(0.651)PQWR;S(0.081)RS(0.919)PQWR;S(0.082)RS(0.918)PQWR ;; 99.013 0.0023174 2418570000 126220 212023 189484 111842 216985 159425 205243 210965 179062 209847 TRUE FALSE FALSE 154297.2035 236817.2455 259582.0167 117951.6453 195381.2115 167772.2465 161391.1564 159225.503 214998.1009 157536.0048 0.979440882 1.503257911 1.647763106 0.748728174 1.240232109 1.064977156 1.024471558 1.010724521 1.364755322 1 17.26532207 -5.25437414 24.99717465 1.07091966 1.389464335 0.299010691 0.218505337 682.7052912 2415440.569 0.058405433 0.09847289 5.57E-06 5.25437414 0.318544675 SRS(ph)PQWR ddPTM_HeLa_A486_30min_R1 3 SRSPQWR 7 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.183)RS(0.817)PQWR;S(0.165)RS(0.835)PQWR;S(0.121)RS(0.879)PQWR ;; 87.258 0.0023319 863040000 133456 147522 131681 45286.1 160609 126959 132395 146898 113851 125212 TRUE FALSE FALSE 124101.4236 135831.8195 182671.4097 105428.3294 140463.9216 111296.0894 99268.37067 113452.5322 123719.6963 93858.10021 1.322223903 1.447204015 1.946250876 1.123273635 1.496556198 1.185790988 1.057643085 1.208766552 1.318156835 1 16.51819364 -5.957298714 1.339615812 1.15886183 1.524828568 0.352285282 0.209711011 0.489563155 1.825512833 0.087958693 0.103199354 1.10E-06 5.957298714 0.365966737 SRS(ph)PS(ph)SPELNNK ddPTM_HeLa_A485_30min_R1 2 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.059)RS(0.948)PS(0.991)S(0.002)PELNNK;S(0.018)RS(0.986)PS(0.894)S(0.102)PELNNK ; 136.83 5.03E-05 604060000 903290 830020 508230 1354470 1062840 964760 1483050 1394410 727700 1692430 TRUE FALSE FALSE 1104223.744 927083.6188 696245.4262 1428461.266 957019.9177 1015273.342 1166184.252 1052428.761 873742.7151 1270538.348 0.869099108 0.729677794 0.547992453 1.124296066 0.753239695 0.799089098 0.917866237 0.828332937 0.687694879 1 20.27700849 -11.54658331 2.246163454 4.244239951 0.808010566 0.13976224 0.14406608 8448619.869 695941.2101 139958209.3 0.036059401 2.84E-12 11.54658331 -3.436229384 SRS(ph)PSS(ph)PELNNK ddPTM_HeLa_A485_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.398)RS(0.645)PS(0.169)S(0.788)PELNNK 85.006 0.0033569 0 370650 342090 223090 555040 443980 374160 629380 599790 304730 719570 TRUE FALSE FALSE 453099.8138 382094.4497 305620.2745 585360.4298 399775.7923 393750.439 494907.8214 452690.5621 365886.5159 540194.4417 0.838771707 0.707327622 0.565759754 1.083610612 0.740059063 0.728905018 0.916166075 0.838014106 0.677323733 1 19.04311927 -11.77801702 2.043694567 9.163907441 0.790225162 0.180421485 0.135224619 4202832.409 119337.0245 161162810.4 0.033562995 1.67E-12 11.77801702 -8.373682278 SRS(ph)PTIK ddPTM_HeLa_A486_30min_R1 1 SRSPTIK 7 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.092)RS(0.907)PT(0.001)IK 75.294 0.0080956 62527000 148080 92423 79329 61662 91155 161680 111850 94486 121240 185770 TRUE FALSE FALSE 137700.3567 85099.06488 110047.3133 143552.2522 79721.48991 141733.5654 83863.94697 72973.60041 131749.1808 139251.9828 0.988857421 0.611115642 0.790274659 1.030881208 0.572498059 1.017820806 0.602245981 0.524039938 0.946120681 1 17.08733835 -5.767659389 24.99884891 0.756614214 0.833198356 0.025479257 0.197400311 653.0002208 2624468.987 0.059636007 0.069297785 1.71E-06 5.767659389 0.076584142 SRS(ph)PVDLR ddPTM_HeLa_A485_30min_R1 2 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.251)RS(0.749)PVDLR;S(0.209)RS(0.791)PVDLR ; 79.633 0.0045864 1248300000 641419 840160 828998 663760 967570 820419 923951 959196 783595 1011340 TRUE FALSE FALSE 784100.4437 938409.4036 1135678.858 700019.5281 871235.3335 863374.8702 726541.3209 723951.677 940855.3289 759231.5503 1.032755348 1.235998956 1.495826744 0.922010588 1.147522562 1.137169379 0.956943004 0.95353213 1.239220536 1 19.53418042 -5.283430367 24.99995501 1.052681744 1.252974287 0.306526052 0.140548373 973.3094252 1106482.186 0.039808292 0.059099365 5.21E-06 5.283430367 0.200292542 SRS(ph)QPCDLDAR ddPTM_HeLa_A485_30min_R1 1 SRSQPCDLDAR 11 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 S(0.178)RS(0.822)QPCDLDAR 108.97 0.0080821 368560000 156780 210680 181170 169940 253240 192440 247110 256360 170360 228470 TRUE FALSE FALSE 191655.1701 235317.1933 248192.3221 179223.3919 228026.5364 202515.8608 194312.9298 193487.308 204549.6894 171516.6337 1.11741448 1.371978847 1.447045204 1.044933008 1.329471851 1.180735982 1.132910119 1.128096464 1.19259389 1 17.38798897 -7.502857732 0.307402729 0.985784561 1.313585014 0.305186407 0.114301535 1.820655312 0.610303683 0.218948566 0.19232263 3.14E-08 7.502857732 0.327800454 SRS(ph)QPCDLDAR ddPTM_HeLa_A486_30min_R1 2 SRSQPCDLDAR 11 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 S(0.006)RS(0.994)QPCDLDAR;S(0.211)RS(0.789)QPCDLDAR ; 132.06 0.00079262 272560000 428960 506620 471610 200873 581870 481080 585810 565150 472140 513160 TRUE FALSE FALSE 398892.1192 466473.5861 654230.0222 467642.4956 508886.4389 421729.2409 439234.1419 436477.6821 513065.4753 384661.3959 1.036995455 1.212686251 1.700794593 1.215725052 1.322946478 1.096364869 1.141872168 1.134706229 1.333810673 1 18.55322952 -6.252009499 24.21913632 1.149802513 1.310924978 0.164229099 0.174739882 855.6626449 2197632.195 0.059659379 0.05888798 5.60E-07 6.252009499 0.161122465 SRS(ph)RS(ph)PT(ph)PPS(ph)SAGLGSNSAPPIPDSR ddPTM_HeLa_A486_30min_R1 1 SRSRSPTPPSSAGLGSNSAPPIPDSR 26 2 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 4 0 S(0.73)RS(0.821)RS(0.821)PT(0.807)PPS(0.605)S(0.178)AGLGS(0.021)NS(0.018)APPIPDSR 53.482 0.013288 569750000 103590 103820 94962 74077 102280 100900 131050 120030 94131 123940 TRUE FALSE FALSE 96328.87594 95592.92509 131733.8296 172454.9996 89451.08868 88451.98388 98259.90389 92701.78924 102290.3509 92904.61729 1.036857788 1.028936213 1.417947067 1.856258652 0.962827159 0.952073067 1.057642847 0.997816814 1.10102548 1 16.50346268 SRS(ph)S(ph)S(ph)PVTELAS(ph)RSPIRQDR ddPTM_HeLa_A486_30min_R1 1 SRSSSPVTELASRSPIRQDR 20 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.656)RS(0.703)S(0.703)S(0.935)PVT(0.184)ELAS(0.44)RS(0.379)PIRQDR 40.428 0.035612 341510000 59068 55310 47385 32722 70573 61289 89107 90513 53595 67406 TRUE FALSE FALSE 54927.63823 50927.03416 65733.74101 76178.46968 61721.07627 53727.78632 66811.48612 69905.16578 58240.65775 50527.09886 1.087092659 1.007915264 1.300960128 1.507675513 1.221544036 1.063345958 1.32229017 1.383518297 1.15266182 1 15.62476973 -4.761646771 24.99999999 1.262655787 1.047503913 0.223207022 0.143283558 6.99290671 843467.3695 0.037477856 0.086834248 1.73E-05 4.761646771 -0.215151875 SRS(ph)S(ph)S(ph)VGS(ph)SSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 4 0 S(0.222)RS(0.791)S(0.988)S(1)VGS(0.626)S(0.146)S(0.203)S(0.025)YPISPAVSR 152.09 1.97E-09 404600000 276440 344180 252740 125760 306350 306580 363870 350080 293330 374980 TRUE FALSE FALSE 257062.9835 316905.9233 350607.6966 292775.6356 267924.7264 268757.2767 272825.8774 270374.4262 318756.0806 281082.5673 0.914546163 1.127447804 1.24734771 1.041600119 0.953188698 0.95615064 0.970625393 0.96190393 1.13403006 1 18.10063446 -5.518166524 24.45491357 0.991416572 1.107035054 0.195763324 0.090319933 217.7525352 1130067.992 0.026862885 0.035663053 3.03E-06 5.518166524 0.115618482 SRS(ph)S(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A485_30min_R1 3 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.062)RS(0.669)S(0.728)S(0.826)VGS(0.212)S(0.17)S(0.137)S(0.17)Y(0.025)PISPAVSR;S(0.231)RS(0.852)S(0.859)S(0.9)VGS(0.089)S(0.024)S(0.022)S(0.02)Y(0.003)PISPAVSR;S(0.598)RS(0.697)S(0.697)S(0.737)VGS(0.076)S(0.067)S(0.059)S(0.052)Y(0.018)PISPAVSR ;; 113.47 0.00015631 1093750000 267010 393693 330554 346935 453843 388310 482339 499840 344958 477887 TRUE FALSE FALSE 326405.4533 439731.9717 452839.6801 365887.1806 408656.7974 408641.3112 379283.3323 377253.4563 414187.9065 358758.5658 0.909819261 1.225704453 1.262240747 1.019870229 1.139085826 1.13904266 1.057210527 1.051552471 1.154503184 1 18.45265375 -6.762633262 24.96970028 1.070112581 1.124281401 0.052940979 0.099599536 101.521682 2123202.885 0.039900194 0.028607262 1.73E-07 6.762633262 0.054168819 SRS(ph)S(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.093)RS(0.909)S(0.924)S(0.961)VGS(0.072)S(0.014)S(0.011)S(0.014)Y(0.003)PISPAVSR 131.54 3.97E-06 649610000 233570 250060 185350 101440 248850 233880 267110 257740 226640 298510 TRUE FALSE FALSE 217197.9492 230244.3349 257122.4838 236157.4465 217636.9126 205026.2635 200276.2528 199058.2284 246285.3377 223761.153 0.970668707 1.02897367 1.149093488 1.055399667 0.972630457 0.916272824 0.895044784 0.889601371 1.100661729 1 17.77160007 -5.824486544 4.283729231 0.949161144 1.056871973 0.266842058 0.070632013 0.259880904 9.472133099 0.022896432 0.026841885 1.50E-06 5.824486544 0.10771083 SRS(ph)S(ph)SVGSSSSY(ph)PISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.532)RS(0.622)S(0.621)S(0.317)VGS(0.174)S(0.154)S(0.136)S(0.157)Y(0.289)PISPAVSR 56.215 0.02597 232190000 82102 88027 70491 35206 99780 87858 102600 101330 78932 102620 TRUE FALSE FALSE 76347.07378 81051.41993 97787.00301 81961.34721 87264.66199 77018.97323 76928.39481 78259.37102 85773.88931 76923.28406 0.992509287 1.053665622 1.271227616 1.065494645 1.134437551 1.001243956 1.00006644 1.017369084 1.115057559 1 16.23113274 -6.262122152 24.98319372 1.026165414 1.10791067 0.20872913 0.074432036 100.7149923 3685162.679 0.026320683 0.024527503 5.47E-07 6.262122152 0.081745255 SRS(ph)SDIVSSVR ddPTM_HeLa_A485_30min_R1 4 SRSSDIVSSVR 11 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.204)RS(0.788)S(0.008)DIVSSVR;S(0.001)RS(0.737)S(0.262)DIVSSVR;S(0.009)RS(0.981)S(0.01)DIVSSVR;S(0.017)RS(0.967)S(0.016)DIVSSVR ;;; 182.52 8.57E-11 5882490000 945919 1215820 1308190 1049640 1877280 1390960 1903180 2011020 1552980 1646220 TRUE FALSE FALSE 1156335.418 1357999.573 1792143.919 1106979.175 1690371.412 1463788.515 1496550.045 1517814.192 1864648.841 1235847.65 0.935661785 1.098840599 1.450133371 0.895724627 1.367783004 1.184440909 1.21095027 1.228156392 1.508801542 1 20.23706947 -4.524407464 24.96299082 1.232466659 0.976456403 0.212188255 0.177183077 58.03851302 947753.7312 0.042383814 0.114017575 2.99E-05 4.524407464 -0.256010256 SRS(ph)SDIVSSVR ddPTM_HeLa_A486_30min_R1 4 SRSSDIVSSVR 11 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.002)RS(0.963)S(0.034)DIVS(0.001)SVR;S(0.002)RS(0.97)S(0.028)DIVSSVR;S(0.175)RS(0.714)S(0.111)DIVSSVR;S(0.199)RS(0.794)S(0.007)DIVSSVR ;;; 212.43 1.16E-15 4007700000 1499827 1636247 1188647 491835 1849377 1663466 1983914 2323330 1385284 1963918 TRUE FALSE FALSE 1394696.872 1506584.829 1648922.951 1145016.736 1617410.892 1458244.478 1487517.733 1794358.477 1505361.532 1472140.15 0.947394086 1.02339769 1.120085579 0.777790577 1.098679967 0.990560904 1.010445733 1.218877481 1.022566725 1 20.48948359 -7.030602166 24.76084352 1.095365604 0.995611931 0.121660037 0.103118782 1103.262819 892667.8882 0.046457679 0.026867645 9.32E-08 7.030602166 -0.099753673 SRS(ph)SS(ph)PVTELAS(ph)RSPIRQDR ddPTM_HeLa_A485_30min_R1 1 SRSSSPVTELASRSPIRQDR 20 3 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.369)RS(0.453)S(0.301)S(0.877)PVT(0.068)ELAS(0.518)RS(0.414)PIRQDR 57.21 0.017966 346540000 19843 34209 33403 26110 46893 34012 50262 73694 34548 40842 TRUE FALSE FALSE 24257.00689 38209.44497 45760.15971 27536.32319 42224.16827 35792.81573 39523.1131 55620.43095 41481.46671 30660.84104 0.791139645 1.246196897 1.492462638 0.89809419 1.377136661 1.167378797 1.28904204 1.814054314 1.352913531 1 14.90410965 -7.008763383 23.68334621 1.460399963 1.182813998 0.108204507 0.268508146 350.6016219 947510.4031 0.112998061 0.07177199 9.80E-08 7.008763383 -0.277585966 SRS(ph)TTELDDYSTNK ddPTM_HeLa_A485_30min_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.188)RS(0.761)T(0.047)T(0.004)ELDDYSTNK 88.427 0.020332 813800000 27697 22016 16378 40533 33222 23209 42167 39362 30818 53873 TRUE FALSE FALSE 33858.1021 24590.57969 22436.90375 42747.21516 29914.30103 24424.18735 33157.67598 29708.40778 37002.88992 40443.45256 0.837171407 0.60802375 0.554772215 1.05696256 0.739657451 0.603909553 0.819852754 0.734566559 0.914929057 1 15.30361854 -7.889052112 2.95422749 0.999680669 0.740397716 0.287846444 0.136774557 0.309408485 5.314350875 0.132808252 0.035981002 1.29E-08 7.889052112 -0.259282953 SRS(ph)TTELDDYSTNK ddPTM_HeLa_A486_30min_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.023)RS(0.933)T(0.042)T(0.001)ELDDYS(0.002)TNK 114.54 0.0025926 953980000 178950 176590 102950 66148 150790 212630 235070 208110 151140 264950 TRUE FALSE FALSE 166406.5291 162596.3653 142814.9971 153995.8869 131876.5121 186397.8725 176252.9997 160727.896 164240.9369 198604.7955 0.837877699 0.818693048 0.719091383 0.775388563 0.664014743 0.938536615 0.887455911 0.809285071 0.826973672 1 17.59954093 -6.274648241 24.98523507 0.880218423 0.764353846 0.470611782 0.068017991 817.4075352 1546163.602 0.024381345 0.021629894 5.31E-07 6.274648241 -0.115864577 SRS(ph)TTELDDYSTNKNGNNK ddPTM_HeLa_A485_30min_R1 2 SRSTTELDDYSTNKNGNNK 19 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.004)RS(0.332)T(0.332)T(0.332)ELDDYSTNKNGNNK;S(0.118)RS(0.684)T(0.177)T(0.021)ELDDYSTNKNGNNK ; 143.31 1.81E-08 601340000 335698 322400 186253 337899 366180 436810 692680 737930 264706 500610 TRUE FALSE FALSE 410372.862 360101.8755 255155.7353 356357.5668 329721.8335 459680.6962 544683.2593 556951.5105 317830.0662 375817.14 1.091948233 0.958183747 0.678935866 0.948220634 0.877346449 1.223149897 1.449330542 1.481974745 0.84570402 1 18.51967134 -6.279262672 7.478967307 1.246489918 0.902541858 0.325434784 0.202523277 0.192809209 58.65531381 0.07095986 0.064387753 5.26E-07 6.279262672 -0.34394806 SRS(ph)TTELDDYSTNKNGNNK ddPTM_HeLa_A486_30min_R1 1 SRSTTELDDYSTNKNGNNK 19 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.25)RS(0.748)T(0.002)TELDDYSTNKNGNNK 224.93 5.24E-35 319340000 238330 160490 86601 88261 225130 152630 261100 278230 112500 358250 TRUE FALSE FALSE 221624.2977 147772.1879 120135.2265 205476.0685 196892.0961 133800.0624 195770.0184 214883.1027 122251.5906 268541.8682 0.825287689 0.55027616 0.447361252 0.765154685 0.733189567 0.498246561 0.729011158 0.800184732 0.455242199 1 18.03478751 -10.93552693 2.741904275 1.236177704 0.645155474 0.372199787 0.138360831 33357160.86 14840116.73 50243713.93 0.034315394 1.16E-11 10.93552693 -0.59102223 SRS(ph)VS(ph)PCSNVESR ddPTM_HeLa_A485_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.297)RS(0.699)VS(0.784)PCS(0.219)NVESR 153.98 1.54E-07 1046800000 396390 560640 592180 419330 728600 509130 651510 695320 557270 598670 TRUE FALSE FALSE 484565.588 626201.9711 811252.0247 442236.9361 656058.0257 535787.2595 512309.5662 524791.6798 669108.9774 449432.5867 1.078171905 1.393316795 1.805058308 0.983989477 1.459747346 1.192141548 1.139903027 1.167676077 1.488786077 1 18.77774521 -5.293467589 24.99781077 1.219008325 1.422296312 0.165486292 0.225680446 1234.12185 963221.2426 0.062720721 0.093037257 5.09E-06 5.293467589 0.203287987 SRS(ph)VS(ph)PCSNVESR ddPTM_HeLa_A486_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.004)RS(0.996)VS(1)PCSNVESR 142.88 1.18E-07 941260000 623160 707420 604590 242710 918020 652980 741600 882650 591670 614080 TRUE FALSE FALSE 579479.702 651361.4628 838703.4395 565041.1459 802873.3714 572421.9666 556043.8362 681689.8631 642956.432 460310.371 1.258889085 1.415048419 1.822038981 1.227522084 1.744200048 1.243556528 1.207975903 1.480935269 1.396788933 1 18.81224742 SRS(ph)VSPCS(ph)NVESR ddPTM_HeLa_A485_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.41)RS(0.534)VS(0.359)PCS(0.647)NVES(0.05)R 144.53 3.99E-07 1259000000 720840 919430 971680 782620 1328300 994750 1138100 1265400 864920 1173600 TRUE FALSE FALSE 881188.3711 1026949.341 1331144.867 825372.5489 1196049.788 1046833.572 894935.6376 955058.6659 1038501.51 881043.1185 1.000164864 1.165606222 1.510873689 0.936812889 1.357538312 1.188175187 1.015768262 1.084008996 1.178718145 1 19.7488531 -6.667641422 7.388765145 1.077040073 1.203175656 0.124819788 0.158819666 0.500506674 33.96519955 0.059903552 0.046186606 2.15E-07 6.667641422 0.126135583 SRS(ph)VSPCS(ph)NVESR ddPTM_HeLa_A486_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.067)RS(0.933)VS(0.074)PCS(0.919)NVES(0.007)R 185.25 1.34E-16 1425000000 1071200 1224700 1140600 414620 1590400 1117400 1410700 1454600 1052600 1075100 TRUE FALSE FALSE 996114.4117 1127650.312 1582270.866 965256.3137 1390917.202 979546.5489 1057727.939 1123419.334 1143840.216 805887.9623 1.236045776 1.39926437 1.963388139 1.197754972 1.725943639 1.215487257 1.312499986 1.394014288 1.419353892 1 19.62021976 -6.289084602 24.68324264 1.295661277 1.507088851 0.196188459 0.235793262 1193.262149 1065408.678 0.081200749 0.071629171 5.14E-07 6.289084602 0.211427574 SRS(ph)WEDS(ph)PER ddPTM_HeLa_A485_30min_R1 6 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 S(0.147)RS(0.853)WEDS(1)PER;S(0.317)RS(0.683)WEDS(1)PER;S(0.104)RS(0.896)WEDS(1)PER;S(0.099)RS(0.901)WEDS(1)PER;S(0.003)RS(0.997)WEDS(1)PER;SRS(1)WEDS(1)PER ;;;;; 149.32 1.67E-05 12096210000 5970180 7193850 6582900 6493130 9024960 7156920 8821160 9204950 6804260 8542250 TRUE FALSE FALSE 7298225.944 8035108.179 9018188.647 6847833.25 8126403.294 7531645.264 6936447.104 6947421.58 8169812.57 6412824.283 1.138067351 1.252974949 1.406274092 1.067834225 1.267211284 1.174466184 1.081652451 1.083363784 1.273980419 1 22.61252845 -6.527557356 5.228051915 1.117324871 1.228760685 0.216529382 0.104149982 0.29247444 24.87333321 0.039012395 0.031412814 2.97E-07 6.527557356 0.111435814 SRS(ph)WEDS(ph)PER ddPTM_HeLa_A486_30min_R1 3 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 2 0 S(0.102)RS(0.898)WEDS(1)PER;S(0.029)RS(0.971)WEDS(1)PER;S(0.042)RS(0.963)WEDS(0.995)PER ;; 162.52 2.20E-06 8228700000 3610220 4292490 3341230 1623740 4770280 3978190 4766720 4724090 3570950 4383690 TRUE FALSE FALSE 3357162.221 3952337.459 4635043.737 3780148.779 4171947.001 3487401.365 3574036.239 3648517.833 3880482.821 3285985.491 1.021660695 1.202786035 1.410549058 1.15038511 1.269618205 1.061295424 1.087660383 1.110326824 1.180919037 1 21.64789468 -6.266483447 24.93628608 1.094912011 1.218262084 0.269815881 0.100467115 589.1882932 2912751.008 0.035445187 0.032214057 5.41E-07 6.266483447 0.123350073 SRS(ph)WPASPR ddPTM_HeLa_A485_30min_R1 6 SRSWPASPR 9 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 S(0.009)RS(0.991)WPASPR;S(0.162)RS(0.838)WPASPR;SRS(1)WPASPR;S(0.003)RS(0.997)WPASPR;S(0.002)RS(0.998)WPASPR;S(0.004)RS(0.996)WPASPR ;;;;; 141.58 5.91E-05 2641070000 282533.3 379822 352142 281099 447358 354199 421178 491986 356398 409801 TRUE FALSE FALSE 345381.8579 424238.8789 482413.9797 296454.7266 402817.4668 372744.3119 331189.8796 371325.6621 427923.8095 307645.1525 1.122663091 1.378987692 1.56808575 0.963625541 1.309357432 1.211604697 1.076532092 1.206993379 1.390965552 1 18.23090774 -5.260377265 24.99997903 1.178405159 1.358819713 0.230005356 0.158920023 151.2971854 3561188.742 0.043367651 0.06998147 5.49E-06 5.260377265 0.180414555 SRS(ph)WPASPR ddPTM_HeLa_A486_30min_R1 4 SRSWPASPR 9 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 SRS(1)WPASPR;S(0.018)RS(0.982)WPASPR;SRS(1)WPASPR;S(0.12)RS(0.88)WPASPR ;;; 116.74 0.00030024 1952520000 278095 312909 241340 80204 346631 272043 287134 303953 246471 299762 TRUE FALSE FALSE 258601.9766 288112.9512 334793.3113 186718.9653 303153.3078 238481.1006 215290.0362 234749.5371 267835.3047 224699.6441 1.150878443 1.282213652 1.489959242 0.830971344 1.349149034 1.061332792 0.958123619 1.044725897 1.191970311 1 17.77763831 -5.25294264 24.99941992 1.071756262 1.305136747 0.356785654 0.150584422 734.4479227 2160915.216 0.040369859 0.068470041 5.59E-06 5.25294264 0.233380486 SRS(ph)WTS(ph)PK ddPTM_HeLa_A485_30min_R1 1 SRSWTSPK 8 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 2 0 S(0.192)RS(0.808)WT(0.001)S(0.999)PK 75.589 0.013801 258350000 399750 390680 278300 738490 519820 459200 772020 725320 369340 946230 TRUE FALSE FALSE 488673.0084 436366.6275 381254.751 778831.8387 468064.8956 483243.0019 607071.6202 547434.1327 443463.1502 710352.2751 0.687930518 0.614296093 0.536712226 1.096402259 0.658919401 0.680286414 0.854606428 0.770651622 0.624286239 1 19.43817513 -14 0.201181252 2.179761048 0.688274883 0.224164346 0.150133142 229.2681309 2.270750532 109.6136336 0.363154017 1.00E-14 14 -1.491486164 SRS(ph)Y(ph)SPAHNR ddPTM_HeLa_A485_30min_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.189)RS(0.812)Y(0.64)S(0.359)PAHNR 104.7 0.0050817 645000000 315970 462700 456870 340180 527600 442570 500180 547340 440830 485630 TRUE FALSE FALSE 386256.4364 516808.74 625885.2249 358763.172 475070.2915 465742.2809 393312.4569 413104.0068 529300.5375 364571.3784 1.059480967 1.417579028 1.716770054 0.984068397 1.303092672 1.277506432 1.078835258 1.133122432 1.451843367 1 18.47584178 -5.282237101 24.99811678 1.186581789 1.399907022 0.205204731 0.199775352 1300.876515 1563604.121 0.056016853 0.083181721 5.22E-06 5.282237101 0.213325232 SRS(ph)YS(ph)PAHNR ddPTM_HeLa_A485_30min_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.371)RS(0.647)Y(0.095)S(0.887)PAHNR 104.55 0.001112 953390000 498280 675110 651470 509450 852570 622760 754050 820460 566500 773820 TRUE FALSE FALSE 609120.667 754058.2418 892475.8629 537279.9635 767685.1372 655366.7506 592941.0575 619240.8986 680191.3538 580920.9151 1.048543186 1.29803941 1.536312155 0.92487626 1.321496812 1.128151412 1.02069153 1.0659642 1.170884601 1 19.14798225 -6.218082835 1.076559132 1.066071423 1.251831511 0.166325874 0.160426042 0.90648407 2.203139149 0.085765256 0.080798245 6.05E-07 6.218082835 0.185760088 SRS(ph)YS(ph)PAHNR ddPTM_HeLa_A486_30min_R1 1 SRSYSPAHNR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.384)RS(0.617)Y(0.118)S(0.881)PAHNR 92.265 0.003195 807830000 461070 594490 486050 121700 690380 498070 508500 562510 474480 436390 TRUE FALSE FALSE 428751.374 547380.4473 674261.5769 283323.7504 603786.1029 436623.1874 381267.9216 434438.7525 515608.3084 327115.1036 1.310704915 1.673357302 2.061236456 0.866128611 1.845790965 1.334769268 1.165546676 1.32809139 1.576228987 1 18.31943885 -12.00042973 0.099406697 1.60E-07 1.841807704 0.167769464 0.323373898 193.997239 2.06647933 48.74301296 6.421994439 9.99E-13 12.00042973 1.841807544 SRS(ph)YS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SRSYSPR 7 1 P62995;P62995-3;H7BXF3;H7C2L4;M0R088;Q8IYB3;Q13595;Q13595-3;Q13595-4;J3KTL2;Q07955;J3KSR8 P62995;M0R088;Q8IYB3;Q13595;J3KTL2 TRA2B;SRRM1;TRA2A;SRSF1 Transformer-2 protein homolog beta;Serine/arginine repetitive matrix protein 1;Transformer-2 protein homolog alpha;Serine/arginine-rich splicing factor 1 2 0 S(0.025)RS(0.968)Y(0.013)S(0.993)PR;S(0.008)RS(0.919)Y(0.091)S(0.983)PR ; 89.827 0.016094 1616832000 402040 324050 334990 149734 394920 420930 398510 365660 386880 432770 TRUE FALSE FALSE 373859.0721 298371.0978 464707.0993 348588.3191 345385.4511 368999.9363 298798.583 282407.2003 420415.0699 324401.5751 1.152457635 0.919758474 1.432505681 1.074558035 1.064684877 1.137478867 0.92107624 0.870548178 1.295971111 1 18.3074213 -6.188145195 1.620417337 1.020869689 1.144488777 0.08235176 0.160422537 0.954652053 4.990400634 0.067564657 0.064918344 6.48E-07 6.188145195 0.123619089 SRSDLDYIRS(ph)PLPFQNR ddPTM_HeLa_A485_30min_R1 1 SRSDLDYIRSPLPFQNR 17 2 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;H7BYL6 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 1 0 S(0.002)RS(0.002)DLDY(0.029)IRS(0.968)PLPFQNR 48.547 0.023023 73659000 38161 49947 47595 46491 58235 43930 53819 49799 39181 43808 TRUE FALSE FALSE 46649.7828 55787.86717 65202.37109 49030.68561 52436.91892 46230.10687 42320.13099 37585.71717 47044.26731 32887.47183 1.418466675 1.696325806 1.982589949 1.490862109 1.594434476 1.405705708 1.286816184 1.14285821 1.430461653 1 15.00525049 -6.418733859 1.134214812 1.197482663 1.683721294 0.586937104 0.169238535 0.35149422 0.930796364 0.096528581 0.07527913 3.81E-07 6.418733859 0.486238632 SRSFS(ph)SSAEEHS ddPTM_HeLa_A486_30min_R1 1 SRSFSSSAEEHS 12 1 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 SRS(0.109)FS(0.452)S(0.118)S(0.321)AEEHS 157.5 4.36E-07 471550000 441020 461860 373240 127090 588780 454610 559830 596320 448480 503970 TRUE FALSE FALSE 410106.7754 425260.5315 517768.5237 295871.9428 514929.7222 398524.8403 419754.6127 460550.9536 487354.6075 377772.6317 1.085591546 1.125704977 1.370582409 0.783201105 1.363067832 1.054933065 1.111130287 1.219122072 1.290073887 1 18.52715866 -7.255735566 23.39819847 1.190948482 1.130004734 0.007990425 0.1695679 912.651372 3743914.452 0.078078199 0.043359472 5.55E-08 7.255735566 -0.060943748 SRSGS(ph)S(ph)PEVDSK ddPTM_HeLa_A485_30min_R1 1 SRSGSSPEVDSK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SRS(0.085)GS(0.935)S(0.934)PEVDS(0.046)K 131.61 0.00010626 363110000 430140 441860 302620 681730 609170 555720 807300 845500 469460 952620 TRUE FALSE FALSE 525823.159 493531.6833 414571.7311 718971.1837 548518.8959 584816.6399 634813.76 638139.7993 563676.3159 715149.3657 0.735263407 0.690109936 0.579699502 1.005344084 0.766999066 0.817754539 0.887665976 0.892316808 0.788193828 1 19.44788507 -1.7023303 0.129281855 1.029820505 5.51E-19 0.394656668 0.099042852 73.16138382 0.762746609 0.578339062 13.36047438 0.01984585 1.7023303 -1.029820505 SRSGS(ph)SPEVDS(ph)K ddPTM_HeLa_A486_30min_R1 1 SRSGSSPEVDSK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SRS(0.029)GS(0.947)S(0.043)PEVDS(0.982)K 158.98 5.30E-08 489030000 459020 377960 240520 252400 422320 566530 645170 575140 357380 732910 TRUE FALSE FALSE 426845.0684 348009.0731 333655.7853 587599.9556 369348.6876 496637.2887 483741.6421 444193.1772 388357.9861 549384.5656 0.776951329 0.633452585 0.607326464 1.069560363 0.672295348 0.903988426 0.88051553 0.808528679 0.706896426 1 19.06745685 -5.214171511 24.99986762 0.849612102 0.668664324 0.340454912 0.120470238 473.9818128 250687.1219 0.031179119 0.054003659 6.11E-06 5.214171511 -0.180947778 SRSGS(ph)SQELDVKPSASPQER ddPTM_HeLa_A485_30min_R1 1 SRSGSSQELDVKPSASPQER 20 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.088)RS(0.088)GS(0.691)S(0.134)QELDVKPSASPQER 109.91 1.26E-05 425490000 164350 196150 133560 202540 235050 215990 277690 365960 175200 276800 TRUE FALSE FALSE 200909.0905 219088.0362 182969.4019 213604.2473 211647.5967 227298.9024 218359.263 276207.7362 210361.033 207798.8541 0.966844073 1.054327451 0.880512083 1.027937561 1.018521481 1.093840981 1.050820342 1.329207215 1.012330091 1 17.66482817 -6.227008499 1.466547306 1.125142021 0.978424033 0.235092806 0.096007777 0.503398768 2.171786457 0.041472552 0.038584406 5.93E-07 6.227008499 -0.146717988 SRSHT(ph)S(ph)EGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A485_30min_R1 1 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.482)RS(0.482)HT(0.544)S(0.488)EGAHLDIT(0.004)PNSGAAGNSAGPK 118.81 0.0032304 2009600000 280530 353840 336710 168150 483240 343870 501190 622130 402620 333660 TRUE FALSE FALSE 342932.9307 395218.51 461273.0407 177335.6087 435126.9288 361874.5015 394106.6622 469551.642 483422.141 250484.7026 1.369077342 1.577814956 1.841521801 0.707969816 1.737139731 1.444697013 1.573376171 1.874572129 1.929946763 1 17.93436297 -6.95205494 4.484014732 1.685442647 1.451413948 0.022119883 0.370884201 0.580843511 25.2272115 0.1607316 0.10339113 1.12E-07 6.95205494 -0.234028699 SRSHT(ph)S(ph)EGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_A486_30min_R1 1 SRSHTSEGAHLDITPNSGAAGNSAGPK 27 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.481)RS(0.48)HT(0.541)S(0.486)EGAHLDIT(0.011)PNSGAAGNSAGPK 139.59 2.51E-05 2290300000 513900 495860 329610 20483 504410 459450 416240 430560 406520 214470 TRUE FALSE FALSE 477878.2638 456566.2477 457243.8193 47685.45915 441142.1944 402767.7303 312092.3495 332530.8871 441757.4809 160765.316 2.972520912 2.839954904 2.844169567 0.296615342 2.74401348 2.50531483 1.941291549 2.068424305 2.747840715 1 17.29459666 -1.000000016 0.053707306 4.87E-09 6.477822806 0.194153494 0.764752411 865.8345851 3.505235998 94.22012913 453.8072332 0.099999996 1.000000016 6.477822801 SRSPGS(ph)PVGEGTGSPPK ddPTM_HeLa_A485_30min_R1 3 SRSPGSPVGEGTGSPPK 17 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 S(0.164)RS(0.096)PGS(0.74)PVGEGTGSPPK;S(0.031)RS(0.02)PGS(0.95)PVGEGTGSPPK;S(0.235)RS(0.154)PGS(0.611)PVGEGTGSPPK ;; 143.47 1.44E-08 1931950000 1396580 1348550 1207070 1742230 1874200 1528170 2260790 1899820 1455140 2658590 TRUE FALSE FALSE 1707244.403 1506251.192 1653615.423 1837403.613 1687598.067 1608182.618 1777753.748 1433886.166 1747173.251 1995852.441 0.855396104 0.754690658 0.828525892 0.920610951 0.845552523 0.805762283 0.890724039 0.718432955 0.875402016 1 20.92857363 -8.017010176 24.72127375 1.000000006 0.82808711 0.463842908 0.056075424 843.279364 1225556.995 0.053737156 0.013874874 9.62E-09 8.017010176 -0.171912896 SRSPGS(ph)PVGEGTGSPPK ddPTM_HeLa_A486_30min_R1 4 SRSPGSPVGEGTGSPPK 17 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 S(0.005)RS(0.003)PGS(0.991)PVGEGTGSPPK;S(0.061)RS(0.042)PGS(0.897)PVGEGTGSPPK;S(0.136)RS(0.136)PGS(0.728)PVGEGTGSPPK;S(0.027)RS(0.027)PGS(0.945)PVGEGTGSPPK ;;; 159.2 1.78E-09 3639880000 2452590 2300260 1433370 923600 2427830 2482970 2839380 2802080 2051130 3066150 TRUE FALSE FALSE 2280676.106 2117979.02 1988409.251 2150187.476 2123308.923 2176646.406 2128937.092 2164107.553 2228923.6 2298366.083 0.992303238 0.921515087 0.865140356 0.935528719 0.923834083 0.947040779 0.926282853 0.941585228 0.969786152 1 21.13217718 -7.924764219 1.23312616 1.000487159 0.926923557 0.36893955 0.029335703 0.491733128 1.67219544 0.028603804 0.008993016 1.19E-08 7.924764219 -0.073563602 SRSPGS(ph)PVGEGTGSPPKWQIGEQEFEALMR ddPTM_HeLa_A485_30min_R1 1 SRSPGSPVGEGTGSPPKWQIGEQEFEALMR 30 2 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2;A0A0A0MSR2 P35611 ADD1 Alpha-adducin 1 0 SRS(0.007)PGS(0.993)PVGEGTGSPPKWQIGEQEFEALMR 282.83 5.72E-78 180470000 25041 56817 34392 22844 54654 76348 90197 130300 36643 32670 TRUE FALSE FALSE 30611.28406 63461.25391 47115.03197 24091.90988 49212.45586 80345.46322 70925.67411 98343.7207 43996.91399 24525.97025 1.248117149 2.587512472 1.921026222 0.98230201 2.00654471 3.275934139 2.891860073 4.00977901 1.793890865 1 14.58202259 -6.089717261 6.099690933 2.794326005 1.734296173 0.180567174 0.866504662 0.330239127 18.28755509 0.277108069 0.278682995 8.13E-07 6.089717261 -1.060029832 SRSPLLVTVVES(ph)DPRPQGQPR ddPTM_HeLa_A486_30min_R1 1 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 S(0.099)RS(0.235)PLLVT(0.137)VVES(0.53)DPRPQGQPR 46.65 0.034707 490800000 10850 9055.3 6786.7 0 0 14352 14320 9071.4 0 10797 TRUE FALSE FALSE 10089.47103 8337.725049 9414.691994 0 0 12581.39616 10736.98454 7006.040247 0 8093.360923 1.246635499 1.030193158 1.163261108 0 0 1.554532941 1.326641014 0.865652763 0 1 12.98252322 -7.571396506 24.98829996 0.477606921 0.889432114 0.079211046 0.542133088 326.4349653 168119.3737 0.391477224 0.147961802 2.68E-08 7.571396506 0.411825192 SRSPS(ph)S(ph)PELNNK ddPTM_HeLa_A485_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.336)RS(0.398)PS(0.559)S(0.707)PELNNK 53.491 0.0056635 0 196090 217620 149640 236190 248040 203770 291190 281640 175550 386080 TRUE FALSE FALSE 239709.544 243068.766 204998.063 249092.4616 223344.2667 214439.0821 228974.8777 212567.3484 210781.2748 289837.3613 0.827048462 0.838638486 0.707286535 0.859421506 0.770584806 0.739860041 0.790011601 0.733402166 0.727239835 1 18.14488405 -10.28612992 3.531243177 1.000666572 0.777049572 0.651548022 0.048912243 57545591.66 82182288.26 405079.6263 0.01226223 5.17E-11 10.28612992 -0.223617 SWEEPNWMGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SWEEPNWMGSPR 12 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR ;;; 187.97 4.47E-13 201098000 590046 313413 204305 108207 294276 235298 279689 298473 237673 305990 TRUE FALSE FALSE 548686.8224 288577.0124 283417.3675 251911.3645 257365.1601 206269.3251 209707.854 230517.2135 258274.687 229368.1123 2.39216697 1.258139196 1.235644156 1.09828416 1.122061639 0.899293816 0.914285128 1.005009856 1.126026998 1 17.80730531 -1.866674892 1.011359716 1.015222762 200 0.951161025 0.091055058 49.72059398 0.465148705 0.030157891 22453.33625 0.013593306 1.866674892 198.9847772 up SRSS(ph)S(ph)VGS(ph)SSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.086)RS(0.49)S(0.56)S(0.896)VGS(0.625)S(0.105)S(0.123)S(0.105)Y(0.01)PISPAVSR 91.725 0.00523 913050000 143640 156070 150080 54839 202440 137940 145600 168880 137770 145900 TRUE FALSE FALSE 133571.5778 143702.4448 208194.9953 127667.9634 177048.0875 120922.3653 109169.34 130429.7106 149712.0145 109365.6904 1.221329809 1.313962764 1.903659133 1.167349312 1.618863164 1.105670022 0.998204644 1.192601722 1.368912079 1 16.73880069 -6.27878809 24.27495804 1.1366857 1.447803543 0.335898451 0.219271905 692.3403044 968744.5929 0.076801264 0.067903382 5.26E-07 6.27878809 0.311117844 SRSS(ph)S(ph)VGSS(ph)SSYPISPAVSR ddPTM_HeLa_A485_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.326)RS(0.406)S(0.448)S(0.832)VGS(0.228)S(0.258)S(0.227)S(0.258)Y(0.017)PISPAVSR 76.155 0.00019152 0 35463 47395 44303 39849 54995 45198 59848 64499 42552 58425 TRUE FALSE FALSE 43351.622 52937.43297 60692.5233 42025.84997 49519.5047 47564.49739 47060.98589 48680.51912 51091.79609 43860.72273 0.988392788 1.206943928 1.383755659 0.958165925 1.129017071 1.084443995 1.072964214 1.109888668 1.164864437 1 15.42064196 -5.284721091 24.98075681 1.081431135 1.194422197 0.209659277 0.10506835 1256.03525 1347694.624 0.029629659 0.043981185 5.19E-06 5.284721091 0.112991061 SRSS(ph)S(ph)VGSSSSY(ph)PISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 3 0 S(0.308)RS(0.385)S(0.423)S(0.816)VGS(0.169)S(0.155)S(0.139)S(0.154)Y(0.45)PISPAVSR 83.253 0.0046502 1135300000 377690 396570 330950 156170 464650 344510 394980 411240 307100 375910 TRUE FALSE FALSE 351215.8814 365144.3489 459102.7031 363571.6524 406369.2643 302007.8589 296151.8263 317609.6293 333719.6753 281779.6892 1.246420146 1.295850492 1.629296648 1.290269194 1.442152433 1.071787181 1.051004872 1.127155865 1.184328353 1 18.1042081 -6.265860401 24.67812502 1.092561832 1.384854619 0.643730951 0.109275478 211.7457152 1181959.684 0.038371772 0.034999638 5.42E-07 6.265860401 0.292292787 SRSS(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A485_30min_R1 2 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 S(0.415)RS(0.415)S(0.432)S(0.724)VGS(0.013)S(0.001)SSYPISPAVSR;S(0.341)RS(0.434)S(0.467)S(0.755)VGS(0.002)S(0.001)SSYPISPAVSR ; 76.55 0.00012859 387840000 205165 294013 250417 303596 326948 286482 383473 361125 210412 458550 TRUE FALSE FALSE 250803.2464 328395.2628 343056.669 320180.6807 294395.9091 301481.7545 301540.8609 272558.5275 252639.7584 344241.924 0.728566827 0.953966498 0.996556913 0.930103681 0.855200627 0.875784539 0.875956238 0.791764479 0.733901773 1 18.39306328 -6.557559408 1.426450458 0.829382477 0.906510761 0.03201742 0.092472245 0.994372371 4.116184568 0.049454087 0.034964699 2.77E-07 6.557559408 0.077128284 SRSS(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 2 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 SRS(0.075)S(0.919)S(0.493)VGS(0.399)S(0.025)S(0.036)S(0.052)YPISPAVSR;S(0.054)RS(0.211)S(0.72)S(0.3)VGS(0.244)S(0.285)S(0.074)S(0.065)Y(0.047)PISPAVSR ; 203.06 1.03E-25 914680000 1090120 1085700 901640 393628 1284090 978570 1171060 1141020 947170 1206970 TRUE FALSE FALSE 1013708.217 999665.1779 1250779.155 916385.8769 1123027.459 857843.9828 878048.4018 881234.6543 1029271.458 904736.8559 1.120445366 1.104923682 1.382478393 1.01287559 1.241275241 0.9481696 0.970501418 0.974023163 1.137647319 1 19.78713872 -6.264685031 24.9982036 1.002221816 1.171459583 0.397653473 0.102298352 294.2583641 2266387.736 0.034508922 0.031682697 5.44E-07 6.264685031 0.169237767 SRSS(ph)SS(ph)PPPKQK ddPTM_HeLa_A485_30min_R1 1 SRSSSSPPPKQK 12 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.234)RS(0.345)S(0.421)S(0.059)S(0.941)PPPKQK 66.246 0.010588 39472000 176170 165350 91286 177380 100290 238650 219840 255810 154940 189650 TRUE FALSE FALSE 215358.4087 184686.2441 125056.4901 187069.8203 90304.77546 251145.345 172869.3881 193072.1964 186035.0368 142373.7452 1.512627264 1.297193129 0.878367637 1.313934812 0.634279693 1.763986362 1.214194287 1.356094103 1.306666735 1 17.1193236 -6.275049987 24.99604576 1.343319487 1.133261248 0.107083718 0.288166181 1836.63743 3372997.903 0.098593369 0.087417123 5.31E-07 6.275049987 -0.210058239 SRSS(ph)SVGS(ph)SSSYPISPAVSR ddPTM_HeLa_A485_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 S(0.002)RS(0.301)S(0.673)S(0.145)VGS(0.704)S(0.062)S(0.067)S(0.044)YPISPAVSR 218.95 1.11E-34 979080000 383600 618530 504740 386750 648590 580000 610760 667800 442520 576010 TRUE FALSE FALSE 468930.4966 690861.703 691464.33 407877.1732 584014.1023 610367.9031 480266.1365 504021.0029 531329.705 432421.3077 1.084429671 1.59765879 1.5990524 0.943240229 1.350567356 1.411512089 1.110644013 1.165578555 1.228731553 1 18.72207809 -7.432053666 0.299170978 0.975900739 1.415613249 0.195561989 0.198520344 2.515632435 0.814125045 0.398348115 0.373749412 3.70E-08 7.432053666 0.43971251 SRSS(ph)SVGS(ph)SSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 S(0.009)RS(0.092)S(0.879)S(0.097)VGS(0.728)S(0.073)S(0.1)S(0.022)YPISPAVSR 172.81 3.95E-13 194420000 142060 136690 99525 43219 150860 121780 138660 140160 111860 140380 TRUE FALSE FALSE 132102.3276 125858.1866 138063.7454 100616.0162 131937.7321 106756.0218 103965.8014 108248.6277 121556.1149 105227.9343 1.255392197 1.196053001 1.312044623 0.956172112 1.253828016 1.01452169 0.988005724 1.028706193 1.155169639 1 16.68315821 -5.33536109 1.022125449 1.047424349 1.263027342 0.400435409 0.097362147 0.627445103 1.257047308 0.037628201 0.100122155 4.62E-06 5.33536109 0.215602994 SRST(ph)TELDDYSTNK ddPTM_HeLa_A485_30min_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.059)RS(0.23)T(0.356)T(0.356)ELDDYSTNK 112.74 0.0002696 1214200000 847140 697400 710310 1165400 1240800 792680 1256400 1061300 909750 1571600 TRUE FALSE FALSE 1035583.37 778954.8634 973083.2275 1229062.851 1117261.595 834183.4991 987959.8762 801014.5109 1092328.48 1179829.043 0.877740192 0.660226893 0.824766294 1.041729612 0.946969056 0.707037603 0.83737545 0.678924218 0.925836236 1 20.1701464 -11.88285586 0.998136848 2.298291762 0.829349948 0.153678288 0.11698263 33825.29087 1236.002448 97672.86187 0.037674889 1.31E-12 11.88285586 -1.468941814 SRST(ph)TELDDYSTNKNGNNK ddPTM_HeLa_A485_30min_R1 1 SRSTTELDDYSTNKNGNNK 19 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.107)RS(0.144)T(0.684)T(0.064)ELDDYSTNKNGNNK 202.73 1.42E-25 744230000 182510 237110 145300 191360 290780 328220 474430 610100 218290 289490 TRUE FALSE FALSE 223108.7198 264837.9519 199052.5164 201813.5123 261828.9222 345405.0917 373064.1548 460472.0184 262098.8007 217325.4707 1.026611005 1.218623621 0.915918948 0.928623376 1.204777891 1.589344731 1.716614963 2.118812935 1.206019708 1 17.72949774 -6.155443011 3.188135074 1.611512602 1.031182849 0.380477797 0.294703343 0.234921396 4.545102126 0.10079105 0.100310069 6.99E-07 6.155443011 -0.580329753 SRST(ph)TELDDYSTNKNGNNK ddPTM_HeLa_A486_30min_R1 1 SRSTTELDDYSTNKNGNNK 19 2 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.012)RS(0.051)T(0.702)T(0.235)ELDDYSTNKNGNNK 205.73 1.08E-25 451910000 330970 261950 181550 143370 352180 270410 434870 442440 191990 489900 TRUE FALSE FALSE 307770.7121 241192.128 251851.0221 333772.6055 308006.3005 237049.5635 326060.9264 341706.0704 208631.8478 367225.8513 0.838096531 0.656795068 0.685820514 0.908902803 0.838738066 0.645514369 0.887902977 0.930506578 0.568129523 1 18.4863081 -10.62982476 2.834140974 1.019855645 0.777511755 0.241713813 0.120216661 60247423.47 60218835.96 8830528.435 0.029331401 2.35E-11 10.62982476 -0.24234389 SRSTNT(ph)AVSR ddPTM_HeLa_A485_30min_R1 1 SRSTNTAVSR 10 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 0 S(0.088)RS(0.271)T(0.035)NT(0.607)AVSR 95.618 0.001664 0 55588 88583 79621 56756 98114 89231 112990 148190 76176 80309 TRUE FALSE FALSE 67953.35882 98942.01128 109076.1212 59856.43657 88345.42566 93902.99718 88848.76346 111846.1701 91463.82447 60289.44428 1.12711868 1.641116658 1.809207607 0.992817852 1.465354785 1.557536287 1.473703474 1.855153443 1.517078579 1 15.87961781 -6.004230583 24.9775687 1.531231319 1.413705015 0.003727523 0.293044374 795.4279363 4696293.083 0.091619661 0.101459765 9.90E-07 6.004230583 -0.117526304 SRSTS(ph)SLR ddPTM_HeLa_A486_30min_R1 1 SRSTSSLR 8 1 Q08499-10 Q08499-10 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(0.001)RS(0.101)T(0.213)S(0.472)S(0.213)LR 105.98 0.018911 103740000 225400 133670 197380 73295 209330 220960 207850 189720 212030 256290 TRUE FALSE FALSE 209600.624 123077.5024 273810.822 170634.4641 183073.8795 193700.2018 155843.7316 146524.8976 230408.9311 192113.3158 1.091026008 0.640650555 1.425256864 0.888196965 0.952947372 1.008260156 0.811207338 0.762700373 1.199338683 1 17.55159799 SRSWEDS(ph)PER ddPTM_HeLa_A485_30min_R1 2 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.006)RS(0.044)WEDS(0.951)PER;S(0.001)RS(0.031)WEDS(0.968)PER ; 122.55 0.0014659 424630000 425380 744000 650150 415610 907910 725900 914630 1158380 607330 648060 TRUE FALSE FALSE 520004.3135 831004.3281 890667.54 438313.7219 817515.2925 763907.0015 719211.8287 874285.4887 729215.5602 486510.5687 1.068844845 1.708091009 1.830725985 0.900933608 1.680364919 1.570175554 1.478306691 1.797053435 1.498868899 1 18.89211162 SRSWEDS(ph)PER ddPTM_HeLa_A486_30min_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SRSWEDS(1)PER 99.834 0.00027665 0 322810 328640 374570 176870 510270 343280 412740 444050 302350 415150 TRUE FALSE FALSE 300182.686 302597.3695 519613.5353 411762.2985 446267.1785 300929.6038 309468.0865 342949.5085 328557.9414 311193.7378 0.964616731 0.972376153 1.669742903 1.323170258 1.434049353 0.967016901 0.994454736 1.102045018 1.055798692 1 18.2474535 -6.274738713 24.8501957 1.028402853 1.280953088 0.287107651 0.195848885 1063.876946 1987879.679 0.074296915 0.065890826 5.31E-07 6.274738713 0.252550235 SRSWTS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SRSWTSPK 8 1 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.001)RS(0.001)WT(0.193)S(0.805)PK;S(0.001)RS(0.001)WT(0.016)S(0.983)PK ; 57.293 0.019346 474790000 121869 245930 125190 163498 200015 271570 356870 561190 134967 198783 TRUE FALSE FALSE 148978.3386 274689.3742 171502.9906 172429.4817 180100.8043 285788.9853 280621.8091 423557.2726 162053.6389 149230.0564 0.998313223 1.840710784 1.149252334 1.155460809 1.206866824 1.915089977 1.880464404 2.83828394 1.085931633 1 17.18717861 -6.26351483 24.73247829 1.867378661 1.288735312 0.149915357 0.523550558 245.5770892 2926447.885 0.173019298 0.160157276 5.45E-07 6.26351483 -0.578643349 SRT(ph)AS(ph)GSSVTSLDGTR ddPTM_HeLa_A485_30min_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.001)RT(0.998)AS(0.866)GS(0.08)S(0.054)VTSLDGTR 149.63 9.06E-07 273870000 275510 335970 275550 247560 426540 296550 386390 428720 302360 375410 TRUE FALSE FALSE 336796.249 375258.7689 377487.4116 261083.5759 384072.1799 312076.8994 303834.62 323575.7478 363040.8786 281827.1959 1.19504524 1.331520784 1.339428618 0.926395961 1.362793178 1.107334225 1.078088362 1.148135285 1.288168367 1 18.10445131 -1.058563809 0.020742874 3.52E-07 2.703318726 0.170835066 0.131029181 5108.248859 8.258130191 395.8081627 726.5955514 0.087384859 1.058563809 2.703318374 SRT(ph)AS(ph)GSSVTSLDGTR ddPTM_HeLa_A486_30min_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.003)RT(0.993)AS(0.314)GS(0.279)S(0.173)VT(0.131)S(0.108)LDGTR 170.06 6.27E-11 292980000 419220 421930 333310 153770 523880 445480 481710 499760 353420 386120 TRUE FALSE FALSE 389834.8429 388494.7302 462376.5584 357984.3311 458170.0854 390521.2069 361181.063 385975.5577 384054.7302 289433.0388 1.346891303 1.342261173 1.597525149 1.236846811 1.582991656 1.349262712 1.247891618 1.333557355 1.326920837 1 18.14287009 -9.163912022 0.377877747 0.917087402 1.421128929 0.527245026 0.110933934 4.373171196 0.768187756 0.630632253 0.083626178 6.86E-10 9.163912022 0.504041526 SRT(ph)ASGS(ph)S(ph)VTSLDGTR ddPTM_HeLa_A486_30min_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 3 0 S(0.033)RT(0.967)AS(0.5)GS(0.746)S(0.656)VT(0.097)SLDGTR 171.25 7.41E-12 0 366700 377440 302410 155850 446650 376270 427150 421840 327730 452870 TRUE FALSE FALSE 340996.2236 347530.2798 419511.2508 362826.6762 390626.9922 329849.633 320272.5521 325796.2407 356137.9003 339468.4043 1.004500623 1.02374853 1.235788797 1.068808383 1.15070206 0.971665194 0.943453199 0.959724783 1.049104705 1 18.37291778 -6.274987776 24.75371279 0.979688842 1.098832827 0.41519879 0.066251122 695.4148589 1270559.818 0.024024524 0.021310815 5.31E-07 6.274987776 0.119143984 SRT(ph)ASGS(ph)SVTSLDGTR ddPTM_HeLa_A486_30min_R1 2 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.11)RT(0.876)AS(0.03)GS(0.61)S(0.358)VT(0.015)S(0.001)LDGTR;S(0.014)RT(0.986)AS(0.136)GS(0.37)S(0.247)VT(0.247)S(0.001)LDGTR ; 215.64 2.07E-32 1368700000 2297440 2287050 1817170 844060 2573410 2183480 2577740 2721350 1760900 2046740 TRUE FALSE FALSE 2136401.32 2105815.829 2520826.89 1965014.336 2250628.922 1914104.438 1932762.187 2101758.012 1913536.23 1534222.982 1.392497274 1.372561781 1.643064222 1.280787969 1.466950338 1.247605114 1.259766155 1.369916913 1.247234758 1 20.54907675 -9.893221415 0.177109585 0.673768382 1.520774649 0.604262721 0.100244587 14.10999973 0.567879333 2.659231269 0.434761506 1.28E-10 9.893221415 0.847006267 SRT(ph)ASGSS(ph)VTSLDGTR ddPTM_HeLa_A485_30min_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.014)RT(0.986)AS(0.002)GS(0.376)S(0.501)VT(0.067)S(0.054)LDGT(0.001)R 236.52 4.02E-40 1121500000 710910 831980 756480 688160 1140600 816050 1035200 1126000 704390 970870 TRUE FALSE FALSE 869049.4769 929272.8237 1036333.432 725752.4383 1027037.859 858777.1161 814021.0632 849846.7345 845754.612 728849.9765 1.192357145 1.27498505 1.421874824 0.995750102 1.40912107 1.178263214 1.116856815 1.166010512 1.16039602 1 19.47526236 -8.015604073 0.317609848 0.972566957 1.283873669 0.292384012 0.115876884 2.427879776 0.716079272 0.269012104 0.15171206 9.65E-09 8.015604073 0.311306712 SRT(ph)ASGSS(ph)VTSLDGTR ddPTM_HeLa_A486_30min_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.045)RT(0.955)AS(0.121)GS(0.325)S(0.539)VT(0.009)S(0.006)LDGTR 222.19 1.33E-32 1157600000 1057400 1080000 772630 391970 1171900 981830 1178900 1217300 786310 1004000 TRUE FALSE FALSE 983281.7204 994416.8667 1071813.028 912525.9691 1024909.374 860701.7971 883926.7509 940147.3635 854467.9839 752591.8651 1.306527171 1.321322901 1.424162388 1.212511072 1.36183956 1.143650147 1.174510106 1.249212763 1.135367021 1 19.52150817 -7.574435008 0.232623456 0.940087307 1.410511733 0.686083705 0.066825995 1.322850546 0.320304434 0.246640404 0.218964742 2.66E-08 7.574435008 0.470424426 SRT(ph)ASGSSVTS(ph)LDGTR ddPTM_HeLa_A485_30min_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 S(0.261)RT(0.67)AS(0.116)GS(0.061)S(0.039)VT(0.01)S(0.842)LDGTR 188.85 1.03E-16 777150000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SRT(ph)GS(ph)ESS(ph)QTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 3 0 S(0.009)RT(0.991)GS(0.745)ES(0.415)S(0.583)QT(0.218)GT(0.038)STTSSR 148.19 2.35E-07 117280000 157860 160030 134140 60300 182720 162660 196140 192080 138340 189450 TRUE FALSE FALSE 146794.8292 147348.64 186082.6004 140381.4474 159801.5538 142592.663 147063.6974 148347.5771 150331.4226 142010.4869 1.033690063 1.037589851 1.310344077 0.988528738 1.125279952 1.004099529 1.035583362 1.0446241 1.058593811 1 17.11563795 -5.94253722 1.686142146 1.033846827 1.109362887 0.127922646 0.08386411 0.784204183 4.559695219 0.031827441 0.036807173 1.14E-06 5.94253722 0.07551606 SRT(ph)GSES(ph)S(ph)QTGTSTTSSR ddPTM_HeLa_A485_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 3 0 S(0.133)RT(0.867)GS(0.072)ES(0.927)S(0.863)QT(0.068)GT(0.068)S(0.001)TTSSR 117.84 0.00030796 473030000 203780 226950 196460 225310 315400 189660 314400 327890 210590 266970 TRUE FALSE FALSE 249110.158 253489.8283 269138.7294 237618.1148 283997.6686 199590.3043 247225.8716 247474.4634 252853.4814 200419.2922 1.242945004 1.264797543 1.342878355 1.185604999 1.417017621 0.995863732 1.233543282 1.234783641 1.261622464 1 17.61266186 -6.249893201 24.99253348 1.165360385 1.286278402 0.320665353 0.103720163 1082.710281 2343605.99 0.033399935 0.03313023 5.62E-07 6.249893201 0.120918017 SRT(ph)GSES(ph)S(ph)QTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 3 0 S(0.107)RT(0.893)GS(0.223)ES(0.828)S(0.941)QT(0.008)GTSTTSSR 163.79 2.88E-11 284010000 268630 305950 228520 128250 300940 282570 345320 337830 213180 325960 TRUE FALSE FALSE 249800.4242 281705.4077 317009.064 298572.4814 263193.299 247709.3864 258917.2836 260913.4838 231658.614 244337.4944 1.022358132 1.152935649 1.297422914 1.221967517 1.077171147 1.013800142 1.0596707 1.067840548 0.94810915 1 17.89851574 -5.93261684 4.508731513 1.026330704 1.180278074 0.510288406 0.0715164 0.18802565 7.523016922 0.024289563 0.027507157 1.17E-06 5.93261684 0.15394737 SRT(ph)GSES(ph)SQTGTSTTSSR ddPTM_HeLa_A485_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.12)RT(0.823)GS(0.059)ES(0.745)S(0.081)QT(0.171)GT(0.001)STTSSR 133.94 9.56E-05 4099300000 137700 162290 143070 142250 188560 153140 196420 210530 150630 183970 TRUE FALSE FALSE 168330.8899 181268.4038 195997.5466 150020.7573 169786.3043 161158.1736 154453.2624 158897.1874 180860.0593 138109.6647 1.218820495 1.312496154 1.419144323 1.08624373 1.229358602 1.166885561 1.118337827 1.150514613 1.309539486 1 17.07545476 -5.267899394 24.99056251 1.160322336 1.316387908 0.414622061 0.089564538 503.3133673 1947066.215 0.024336363 0.037115614 5.40E-06 5.267899394 0.156065572 SRT(ph)GSESS(ph)QTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.14)RT(0.855)GS(0.256)ES(0.182)S(0.507)QT(0.052)GT(0.006)S(0.001)TTSSR 101.53 0.0045646 2835000000 304730 317310 243970 122040 326950 280330 332460 336310 258670 360150 TRUE FALSE FALSE 283370.0006 292165.2 338441.7177 284115.2876 285940.8823 245745.7348 249274.9916 259739.5546 281091.7239 269966.0958 1.049650327 1.08222923 1.253645265 1.052410995 1.059173306 0.910283693 0.923356656 0.962119165 1.041211205 1 18.04241871 -5.897996829 2.342516428 0.963728847 1.122134936 0.522533518 0.063970372 0.231816049 2.590678551 0.02268387 0.026458549 1.26E-06 5.897996829 0.158406089 SRT(ph)GSESSQTGTS(ph)TTSSR ddPTM_HeLa_A485_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 SRT(0.912)GS(0.088)ES(0.011)S(0.108)QT(0.087)GT(0.03)S(0.566)T(0.018)TS(0.002)S(0.177)R 244.51 2.78E-44 4490400000 329470 388650 354950 365810 476020 384010 513990 528820 372440 476420 TRUE FALSE FALSE 402759.4648 434099.2367 486260.7757 385793.274 428625.7774 404116.1698 404171.8376 399126.0658 447185.2918 357657.2619 1.126104536 1.213729688 1.359571935 1.078667527 1.198426044 1.129897846 1.130053492 1.115945651 1.250317943 1 18.44821821 -5.294779781 24.99473761 1.136843694 1.231194968 0.249465667 0.081939147 916.6167852 687170.0456 0.022375089 0.033189261 5.07E-06 5.294779781 0.094351274 SRT(ph)GSESSQTGTSTTSSR ddPTM_HeLa_A485_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.001)RT(0.916)GS(0.08)ES(0.002)SQTGTSTTSSR 214.46 5.17E-26 2680500000 95901 138260 109580 95565 140520 136490 181310 211410 142050 165030 TRUE FALSE FALSE 117233.8466 154428.3043 150118.202 100785.474 126529.3354 143636.4053 142571.6373 159561.366 170558.132 123891.0582 0.946265601 1.246484666 1.211695212 0.813500792 1.021295139 1.159376693 1.150782304 1.287916726 1.376678306 1 16.91871254 -6.723492449 2.059773118 1.24068649 1.058607626 0.190802744 0.147601614 0.520264835 4.520029514 0.07467601 0.049398982 1.89E-07 6.723492449 -0.182078863 SRT(ph)GSESSQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.007)RT(0.989)GS(0.003)ESSQTGTSTTSSR 117.18 0.00012685 1268500000 220840 238280 177610 81598 246140 185030 218150 243410 186590 232780 TRUE FALSE FALSE 205360.2564 219397.825 246385.3486 189964.2677 215266.826 162202.8798 163566.5626 187990.8566 202763.7714 174490.3729 1.176914537 1.257363495 1.412028323 1.088680508 1.233688842 0.929580682 0.937395915 1.077370938 1.162034146 1 17.41278792 -5.892685515 1.80934202 1.026023814 1.264219196 0.496460446 0.102419194 0.29528572 1.982847619 0.038421902 0.045852239 1.28E-06 5.892685515 0.238195383 SRT(ph)HS(ph)TSSSLGSGESPFSR ddPTM_HeLa_A485_30min_R1 1 SRTHSTSSSLGSGESPFSR 19 1 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 2 0 S(0.44)RT(0.561)HS(0.797)T(0.167)S(0.029)S(0.005)S(0.001)LGSGESPFSR 73.109 0.0040423 636380000 136470 161490 139110 108650 190150 209910 295740 346330 244990 293120 TRUE FALSE FALSE 166827.2807 180374.8507 190572.5779 114585.2744 171217.9983 220900.563 232552.733 261392.0245 294157.2458 220050.5785 0.758131525 0.819697235 0.866039886 0.520722441 0.778084745 1.003862678 1.056814913 1.187872471 1.336771064 1 17.74747564 -6.542873729 1.806903492 1.178827182 0.744742548 0.721474004 0.11738298 0.189999869 1.253165569 0.056996318 0.042363802 2.87E-07 6.542873729 -0.434084634 SRT(ph)HS(ph)TSSSLGSGESPFSR ddPTM_HeLa_A486_30min_R1 4 SRTHSTSSSLGSGESPFSR 19 1 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 2 0 S(0.133)RT(0.867)HS(0.969)T(0.03)S(0.001)SSLGSGESPFSR;S(0.156)RT(0.844)HS(0.953)T(0.045)S(0.002)SSLGSGESPFSR;S(0.42)RT(0.581)HS(0.974)T(0.025)S(0.001)SSLGSGESPFSR;S(0.435)RT(0.565)HS(0.829)T(0.164)S(0.005)S(0.001)SLGSGESPFSR ;;; 163.67 1.96E-12 4585800000 1957490 1966870 1763870 228798 2415520 1643560 2082220 2070060 1821960 1234140 TRUE FALSE FALSE 1820280.059 1811008.058 2446887.702 532653.3068 2112542.958 1440794.278 1561226.533 1598752.527 1979888.96 925103.3111 1.967650572 1.957627906 2.64498859 0.575777106 2.283575177 1.557441488 1.687623981 1.728188093 2.140181465 1 19.81925496 -11.02469581 2.78662402 0.03283328 1.825423102 0.190500801 0.517710635 235235852.4 211192062.8 1448206806 0.125699291 9.45E-12 11.02469581 1.792589823 SRT(ph)PPT(ph)SR ddPTM_HeLa_A485_30min_R1 1 SRTPPTSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.034)RT(0.962)PPT(0.58)S(0.424)R 59.265 0.028098 867580000 95186 117030 76279 124940 97418 87505 99213 108180 115520 152470 TRUE FALSE FALSE 116359.7973 130715.6405 104497.7763 131765.1558 87718.72186 92086.62649 78015.33205 81648.68538 138703.8044 114462.035 1.016579841 1.141999969 0.912947043 1.151169083 0.766356477 0.804516768 0.681582606 0.713325474 1.211788733 1 16.80450964 -5.76619858 24.99998217 0.836606742 1.051645349 0.252699958 0.158489849 151.4584483 795607.6644 0.04816359 0.056385949 1.71E-06 5.76619858 0.215038607 SRT(ph)PPT(ph)SR ddPTM_HeLa_A486_30min_R1 2 SRTPPTSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.132)RT(0.868)PPT(0.572)S(0.428)R;S(0.014)RT(0.986)PPT(0.583)S(0.417)R ; 79.201 0.0076862 1334930000 199269 94830 197375 72618 133517 287100 151159 149993 242060 208492 TRUE FALSE FALSE 185301.2721 87315.32544 273803.8859 169058.3739 116770.0529 251680.521 113337.4194 115842.8682 263041.9557 156284.2461 1.185668272 0.55869563 1.751960883 1.081736503 0.747164578 1.610402374 0.725200538 0.741231897 1.683099623 1 17.25381283 SRT(ph)PS(ph)RHSCSGS(ph)SPPR ddPTM_HeLa_A486_30min_R1 1 SRTPSRHSCSGSSPPR 16 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.424)RT(0.576)PS(0.566)RHS(0.416)CS(0.047)GS(0.523)S(0.448)PPR 85.932 0.0017918 108520000 48510 32299 26297 29238 35632 61152 41160 43714 26260 43214 TRUE FALSE FALSE 45109.69951 29739.50961 36479.90266 68067.54161 31162.7023 53607.68799 30861.33265 33761.27647 28536.23794 32392.93312 1.392578416 0.918086346 1.126168554 2.101308373 0.962021629 1.654919231 0.952718068 1.042242033 0.88094023 1 14.98339149 -6.798335146 24.767989 0.972494698 1.344219776 0.255336605 0.325831561 241.6534228 162218.7736 0.136843415 0.092262806 1.59E-07 6.798335146 0.371725078 SRT(ph)PSASNDDQQE ddPTM_HeLa_A485_30min_R1 5 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 SRT(0.998)PS(0.001)ASNDDQQE;SRT(0.998)PS(0.002)ASNDDQQE;S(0.175)RT(0.824)PSASNDDQQE;SRT(1)PSASNDDQQE;S(0.002)RT(0.997)PS(0.001)ASNDDQQE ;;;; 223.21 4.25E-27 6120760000 1674115 2119174 1943925 1749764 2564526 2005436 2490211 2697099 1934363 2293712 TRUE FALSE FALSE 2046516.106 2366992.965 2663063.751 1845349.177 2309192.787 2110437.528 1958157.077 2035631.241 2322571.911 1721931.811 1.188500086 1.374614807 1.546555871 1.071673782 1.341047753 1.22562201 1.137186191 1.182178776 1.348817587 1 20.71559658 -5.271434147 24.9989407 1.200233882 1.370362718 0.292282684 0.129463772 891.968448 2230992.777 0.035634323 0.05354541 5.35E-06 5.271434147 0.170128836 SRT(ph)PSASNDDQQE ddPTM_HeLa_A486_30min_R1 5 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 SRT(0.995)PS(0.005)ASNDDQQE;S(0.001)RT(0.995)PS(0.004)ASNDDQQE;S(0.057)RT(0.933)PS(0.002)AS(0.009)NDDQQE;S(0.004)RT(0.992)PS(0.004)ASNDDQQE;SRT(0.999)PS(0.001)ASNDDQQE ;;;; 226.67 2.88E-27 6113858000 1323206 1484214 1230533 490505 1742568 1370781 1544155 1557705 1228920 1466976 TRUE FALSE FALSE 1230456.092 1366599.477 1707028.332 1141920.429 1523998.873 1201667.977 1157791.087 1203049.576 1335443.775 1099635.661 1.118967069 1.242774789 1.552358106 1.038453434 1.385912559 1.092787384 1.052886085 1.094043799 1.214442039 1 20.06859417 -6.290819907 23.270034 1.094337903 1.269388001 0.285661044 0.139771579 409.9688179 324702.4002 0.048235151 0.04254914 5.12E-07 6.290819907 0.175050098 SRT(ph)PSRHS(ph)CS(ph)GSSPPR ddPTM_HeLa_A485_30min_R1 1 SRTPSRHSCSGSSPPR 16 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.276)RT(0.678)PS(0.056)RHS(0.587)CS(0.586)GS(0.435)S(0.383)PPR 67.227 0.012451 2276400000 96967 158880 161040 61322 206510 116560 144100 151550 136760 115240 TRUE FALSE FALSE 118536.9746 177459.6339 220615.3974 64671.86558 185949.1393 122662.9014 113311.8578 114382.1249 164206.4776 86512.78884 1.370167073 2.051253188 2.550089997 0.747541103 2.149383251 1.417858597 1.309770027 1.322141228 1.898060157 1 16.4006258 -5.251936786 24.92071701 1.447225663 1.996578314 0.249214101 0.460760775 964.1658554 2528536.069 0.121668074 0.207201627 5.60E-06 5.251936786 0.549352651 SRT(ph)PSRHS(ph)CSGS(ph)SPPR ddPTM_HeLa_A486_30min_R1 1 SRTPSRHSCSGSSPPR 16 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.139)RT(0.853)PS(0.009)RHS(0.957)CS(0.412)GS(0.484)S(0.146)PPR 86.557 0.001475 2866600000 255770 312030 318910 20916 398670 243920 292170 310620 286050 141060 TRUE FALSE FALSE 237841.8438 287303.6064 442400.4927 48693.50504 348665.0911 213827.6304 219065.9757 239898.6068 310845.0443 105737.6579 2.249357974 2.717136092 4.183944506 0.460512423 3.297454268 2.022246707 2.071787669 2.268809539 2.939776146 1 16.69012975 -10.93534333 2.543815632 9.03E-10 2.460440215 0.187689123 0.916011403 6384640.03 3537986.119 37876176.19 0.218894023 1.16E-11 10.93534333 2.460440214 SRT(ph)PSRHS(ph)CSGSS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 SRTPSRHSCSGSSPPR 16 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.178)RT(0.82)PS(0.002)RHS(0.847)CS(0.16)GS(0.417)S(0.576)PPR 106.69 0.00028868 3614200000 487370 703540 727870 294430 950990 546630 774090 691750 620750 537490 TRUE FALSE FALSE 595783.7751 785812.883 997139.4022 310513.9654 856306.0965 575250.7015 608699.3478 522097.2279 745328.8311 403503.6348 1.476526415 1.947474113 2.471203023 0.769544407 2.122176909 1.425639454 1.50853498 1.293909603 1.847142794 1 18.62222214 -10.93044434 0.115177512 6.74E-10 2.108646089 0.170701645 0.446959916 107.7656709 1.80513203 36.16953363 6.125062925 1.17E-11 10.93044434 2.108646088 SRT(ph)PTSPLEELTSLFSSGR ddPTM_HeLa_A486_30min_R1 1 SRTPTSPLEELTSLFSSGR 19 1 Q9P242;Q9P242-3 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 S(0.048)RT(0.317)PT(0.317)S(0.317)PLEELTSLFSSGR 93.767 0.00056658 57341000 21345 14972 21090 10434 25135 13772 26366 23746 11843 22003 TRUE FALSE FALSE 19848.82573 13785.56419 29256.61281 24290.87931 21982.33393 12072.95066 19768.94793 18339.55417 12869.56078 16493.30558 1.2034474 0.835827853 1.773847738 1.47277204 1.33280341 0.731990965 1.198604357 1.11193927 0.780289961 1 14.00959295 -6.226758758 23.32042741 0.986188598 1.329919246 0.331341923 0.254115001 367.6352466 247209.8956 0.087868436 0.087862212 5.93E-07 6.226758758 0.343730647 SRT(ph)PVQDHR ddPTM_HeLa_A485_30min_R1 1 SRTPVQDHR 9 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.238)RT(0.762)PVQDHR 87.831 0.0046458 10883000000 1598900 2089800 1722400 1694600 2333200 1987400 2507900 2675500 1813500 2350600 TRUE FALSE FALSE 1954569.789 2334183.931 2359587.435 1787171.707 2100898.416 2091457.191 1972066.677 2019329.43 2177452.816 1764638.68 1.107631727 1.3227546 1.337150467 1.012769202 1.19055444 1.185204209 1.117547008 1.144330255 1.233936919 1 20.75094138 -14 0.136483371 0.399526281 1.251266982 0.250780199 0.093508063 202.2363886 1.706727581 33.39248837 0.636133364 1.00E-14 14 0.851740702 SRT(ph)S(ph)PITR ddPTM_HeLa_A485_30min_R1 1 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.32)RT(0.682)S(0.998)PITR 68.536 0.015528 776490000 11389 14317 11600 9895.1 21657 12051 10462 12535 11171 13780 TRUE FALSE FALSE 13922.44376 15991.24861 15891.32272 10435.64426 19500.75304 12681.97173 8226.708233 9460.771596 13412.91723 10344.8996 1.345826861 1.545809938 1.536150502 1.008771922 1.885059671 1.225915399 0.795242926 0.914534888 1.296572973 1 13.33663202 -6.522632906 24.99877398 0.996767506 1.458328188 0.465193136 0.234058676 7.926793835 806242.0694 0.086139184 0.067462922 3.00E-07 6.522632906 0.461560681 SRT(ph)S(ph)PVSR ddPTM_HeLa_A486_30min_R1 1 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.436)RT(0.565)S(0.999)PVSR 83.045 0.0059336 401870000 13250 8866.4 10322 6042 10202 10785 13806 6686.6 11709 10041 TRUE FALSE FALSE 12321.24342 8163.794173 14318.95483 14066.08135 8922.37003 9454.456354 10351.59278 5164.207147 12723.94555 7526.668244 1.637011626 1.084649131 1.902429384 1.868832382 1.185434211 1.256127685 1.375322047 0.686121266 1.690514997 1 12.87779567 -5.786963387 24.75089158 1.194906372 1.60470327 0.299170484 0.317611641 264.8617879 256837.65 0.097648819 0.110765561 1.63E-06 5.786963387 0.409796899 SRT(ph)SPAPWK ddPTM_HeLa_A485_30min_R1 3 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.305)RT(0.377)S(0.318)PAPWK;S(0.058)RT(0.471)S(0.471)PAPWK;S(0.186)RT(0.704)S(0.109)PAPWK ;; 68.676 0.018756 6769300000 6216200 5594100 5613200 9400600 7921100 5759000 8556200 6500700 6778300 11915200 TRUE FALSE FALSE 7598972.244 6248281.333 7689756.265 9914130.974 7132447.471 6060532.335 6728097.972 4906393.132 8138642.636 8944959.923 0.849525578 0.698525358 0.859674759 1.108348283 0.797370534 0.677535996 0.752166363 0.548509236 0.909857921 1 23.09264359 -5.992433875 24.99313115 0.746655013 0.875758787 0.077489866 0.148776636 372.9177112 1231845.63 0.046281971 0.052378485 1.02E-06 5.992433875 0.129103775 SRT(ph)SPAPWK ddPTM_HeLa_A486_30min_R1 1 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.174)RT(0.413)S(0.413)PAPWK 79.697 0.0099698 1077900000 1593900 2127100 1356100 728020 1969100 2135400 2312900 2289200 1841700 2155100 TRUE FALSE FALSE 1482175.841 1958540.849 1881218.238 1694867.352 1722117.117 1871956.059 1734187.957 1767999.133 2001340.039 1615448.933 0.917500895 1.212381778 1.164517305 1.049161826 1.066030056 1.158783804 1.073502184 1.094432078 1.23887546 1 20.62350371 -6.233380832 24.74614507 1.116544703 1.091935367 0.021470036 0.092399553 4078.412026 3596946.558 0.029943602 0.029936391 5.84E-07 6.233380832 -0.024609336 SRT(ph)SPAPWKR ddPTM_HeLa_A485_30min_R1 1 SRTSPAPWKR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.04)RT(0.783)S(0.176)PAPWKR 81.565 0.032547 5683600000 1795200 3188300 2523400 1890800 3186100 3205100 4181400 4714800 2494600 2342400 TRUE FALSE FALSE 2194536.047 3561143.95 3456910.667 1994089.616 2868880.697 3372914.08 3288009.731 3558487.907 2995243.338 1758482.789 1.247971297 2.025123006 1.965848452 1.133983016 1.631452247 1.918081941 1.869799211 2.023612588 1.703311148 1 20.74589978 -6.045653549 22.07091598 1.777075852 1.617199394 0 0.368284416 447.3238411 216253.4815 0.119861541 0.119873377 9.00E-07 6.045653549 -0.159876458 SRT(ph)SPVSR ddPTM_HeLa_A485_30min_R1 2 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.178)RT(0.535)S(0.287)PVSR;S(0.178)RT(0.535)S(0.287)PVSR ; 87.184 0.0052653 5518900000 556590 995750 700590 448260 675580 890190 800740 965740 799810 625100 TRUE FALSE FALSE 680401.5253 1112194.301 959767.395 472747.3087 608316.8831 936798.9719 629655.3576 728890.7508 960324.5307 469274.0741 1.449902227 2.370031421 2.045217172 1.007401292 1.296293396 1.996272591 1.341764637 1.553230385 2.046404401 1 18.84007123 -11.05244119 3.001701137 0.030968439 1.674404807 0.2029133 0.403358008 228726483.3 2568131672 1832366069 0.109026756 8.86E-12 11.05244119 1.643436368 SRT(ph)SPVTR ddPTM_HeLa_A486_30min_R1 2 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.04)RT(0.553)S(0.286)PVT(0.121)R;S(0.035)RT(0.575)S(0.284)PVT(0.106)R ; 90.05 0.0088431 8988100000 2699580 2628580 2628580 1190874 3263880 2774470 3263660 3073320 2702450 3034750 TRUE FALSE FALSE 2510353.383 2420281.748 3646436.572 2772414.855 2854493.736 2432184.1 2447057.749 2373592.126 2936700.542 2274828.847 1.103535058 1.063940151 1.602949856 1.21873558 1.254816924 1.069172348 1.075710707 1.043415697 1.290954502 1 21.11732657 -6.254276482 22.98906788 1.097305385 1.256531043 0.199735971 0.152665213 321.3418984 1031334.182 0.0523999 0.051242745 5.57E-07 6.254276482 0.159225658 SRT(ph)SVQTEDDQLIAGQSAR ddPTM_HeLa_A485_30min_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 S(0.143)RT(0.574)S(0.283)VQTEDDQLIAGQSAR 253.77 7.47E-58 914380000 174770 258410 204610 164180 241920 244300 261380 292880 188150 277430 TRUE FALSE FALSE 213646.9836 288628.8016 280303.7535 173148.7377 217833.5954 257091.1702 205534.0277 221050.7208 225909.9792 208271.8067 1.025808471 1.385827521 1.345855485 0.831359464 1.045910144 1.23440217 0.986854779 1.061356908 1.084688239 1 17.66810803 -5.237271157 24.8938724 1.044259936 1.265830205 0.370307511 0.129258786 797.7878183 821740.2178 0.035081415 0.060722597 5.79E-06 5.237271157 0.221570269 SRT(ph)SVQTEDDQLIAGQSAR ddPTM_HeLa_A486_30min_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 S(0.13)RT(0.435)S(0.435)VQTEDDQLIAGQSAR;S(0.132)RT(0.434)S(0.434)VQTEDDQLIAGQSAR ; 308.39 2.38E-89 2682370000 428510 416600 356610 132205 536800 447820 502320 538920 408170 461670 TRUE FALSE FALSE 398473.6618 383587.0988 494698.9423 307779.9213 469469.5385 392572.5215 376634.223 416219.6805 443550.5042 346064.827 1.151442246 1.108425557 1.429497897 0.889370711 1.356594204 1.134390122 1.088334305 1.20272171 1.281697733 1 18.40068279 -10.04059257 4.353952247 0.99998847 1.180492881 0.127344566 0.143234123 44832657.32 1.581025997 5394.347827 0.032274594 9.11E-11 10.04059257 0.180504411 SRTDEEGNAYGS(ph)EREEEDEEEDEEDGKR ddPTM_HeLa_A486_30min_R1 2 SRTDEEGNAYGSEREEEDEEEDEEDGKR 28 3 P78415 P78415 IRX3 Iroquois-class homeodomain protein IRX-3 1 0 SRTDEEGNAYGS(1)EREEEDEEEDEEDGKR;S(0.016)RT(0.016)DEEGNAY(0.001)GS(0.966)EREEEDEEEDEEDGKR ; 177.1 4.32E-14 565752000 54646 52289 32974 33152 59947 66066 82516 75394 48734 79368 TRUE FALSE FALSE 50815.59759 48145.42921 45742.41587 77179.53141 52427.88828 57915.44863 61869.62403 58228.43204 52958.30236 59493.7362 0.854133575 0.809252071 0.76886104 1.297271551 0.88123375 0.973471366 1.039935092 0.978732145 0.890149211 1 15.86045016 SRTDSLAAT(ph)PPAAK ddPTM_HeLa_A485_30min_R1 1 SRTDSLAATPPAAK 14 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.001)RT(0.001)DS(0.017)LAAT(0.981)PPAAK 93.152 0.0014002 844950000 460820 523420 341340 448700 600970 553250 702250 761240 366650 605950 TRUE FALSE FALSE 563327.8192 584629.4159 467615.8703 473211.3448 541135.3167 582217.3145 552208.5506 574544.6964 440233.2919 454897.8167 1.238361229 1.285188441 1.027958045 1.040258554 1.189575542 1.279885929 1.213917786 1.263019244 0.967763035 1 18.79518298 -7.771672158 24.99085245 0.983881345 1.188375954 0.481590533 0.086407765 221.9334066 541994.876 0.088421113 0.023865598 1.69E-08 7.771672158 0.204494609 SRTDSLAAT(ph)PPAAK ddPTM_HeLa_A486_30min_R1 1 SRTDSLAATPPAAK 14 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.001)RT(0.001)DS(0.008)LAAT(0.99)PPAAK 76.155 0.0083968 453210000 537510 479700 268410 196020 537530 476850 562860 568080 363840 658510 TRUE FALSE FALSE 499833.3247 441686.825 372345.5403 456344.4663 470107.9751 418021.0953 422026.4747 438740.5851 395377.9441 493614.8098 1.01259791 0.894800594 0.754324086 0.924495087 0.952378182 0.846856875 0.854971258 0.888831892 0.800984768 1 18.91302615 -6.35385456 24.09739772 0.86992128 0.899449122 0.023778972 0.077524339 199.5273245 52013.25253 0.027621175 0.024359587 4.43E-07 6.35385456 0.029527842 SRTGS(ph)ES(ph)SQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.044)RT(0.291)GS(0.665)ES(0.796)S(0.202)QT(0.002)GTSTTSSR;S(0.006)RT(0.022)GS(0.964)ES(0.63)S(0.339)QT(0.035)GT(0.002)S(0.001)T(0.001)TSSR ; 175.69 3.72E-12 2993420000 671960 703140 504500 258444 779590 629910 716120 753970 536410 726070 TRUE FALSE FALSE 624859.074 647420.6256 699855.911 601670.693 681806.5528 552198.1087 536939.2017 582307.49 582906.4507 544257.3461 1.148094883 1.189548713 1.285891529 1.105489338 1.25272825 1.014590088 0.986553889 1.069912045 1.071012555 1 19.05392945 -6.270274381 24.99568523 1.030166971 1.195899318 0.714761644 0.053038202 359.0511117 1015812.445 0.018318143 0.016405479 5.37E-07 6.270274381 0.165732348 SRTGS(ph)ESS(ph)QTGTSTTSSR ddPTM_HeLa_A485_30min_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.024)RT(0.091)GS(0.615)ES(0.331)S(0.918)QT(0.022)GTSTTSSR;S(0.293)RT(0.293)GS(0.414)ES(0.004)S(0.988)QT(0.006)GT(0.001)STTSSR ; 135.81 1.78E-05 356690000 324890 529190 459110 286282 640050 473260 670760 810010 411780 409790 TRUE FALSE FALSE 397160.6596 591074.1672 628953.8942 301920.8608 576324.3746 498039.1618 527446.6464 611353.7775 494420.4689 307636.8946 1.291004644 1.921337062 2.044468349 0.981419544 1.873391601 1.618918831 1.714510371 1.987257667 1.607155961 1 18.23086901 SRTGSES(ph)SQTGTSTTSSR ddPTM_HeLa_A485_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.001)RT(0.053)GS(0.117)ES(0.357)S(0.093)QT(0.094)GT(0.094)S(0.094)T(0.083)T(0.006)S(0.006)S(0.001)R 146.15 6.23E-07 3115800000 113630 133830 120260 98041 163160 148240 184600 233750 141290 175840 TRUE FALSE FALSE 138906.6015 149480.2543 164749.1784 103396.7316 146915.2175 156001.6172 145158.702 176422.446 169645.607 132006.3241 1.052272324 1.132371917 1.248040043 0.783271046 1.112940751 1.181773815 1.099634453 1.336469652 1.285132422 1 17.01024752 -6.566143317 1.779860498 1.216745698 1.066819073 0.128925925 0.140688259 0.655879831 4.211078906 0.06837352 0.049800276 2.72E-07 6.566143317 -0.149926625 SRTGSES(ph)SQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SRT(0.009)GS(0.251)ES(0.701)S(0.026)QT(0.009)GT(0.003)STTSSR 294.75 1.74E-77 1406900000 173180 167420 133200 55656 198850 169660 177930 195180 144970 184940 TRUE FALSE FALSE 161040.9763 154153.0295 184778.6072 129569.9807 173908.3788 148729.0742 133410.032 150741.7747 157536.1163 138629.8202 1.161661871 1.111975975 1.332892208 0.934647253 1.254480302 1.072850516 0.962347292 1.087369041 1.13637972 1 17.0808781 -6.501166232 24.3558546 1.048632498 1.154690967 0.208497799 0.105364294 929.0898849 1042202.29 0.036021952 0.031451691 3.15E-07 6.501166232 0.106058468 SRTPPSAPSQS(ph)R ddPTM_HeLa_A486_30min_R1 1 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.007)RT(0.131)PPSAPS(0.028)QS(0.833)R 91.64 0.026844 557600000 139760 152240 119700 52176 169810 141180 159380 163950 124960 157600 TRUE FALSE FALSE 129963.5457 140175.948 166051.0457 121468.3648 148510.8464 123762.647 119501.4383 126622.164 135791.6334 118135.9342 1.100118661 1.186564858 1.40559303 1.028208442 1.257118314 1.047629139 1.011558753 1.07183445 1.149452403 1 16.85008834 -6.274778061 24.16361931 1.057801074 1.19739868 0.328455258 0.099647943 623.4670107 1129434.242 0.034763983 0.030851023 5.31E-07 6.274778061 0.139597605 SRTPPSAPSQSR ddPTM_HeLa_A486_30min_R1 1 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 102.33 0.0048889 0 31364 30575 32234 11760 39043 29014 32260 36725 29751 35127 FALSE FALSE TRUE 29165.54556 28152.12565 44715.86806 27377.87432 34145.86288 25434.54767 24188.20679 28363.5192 32329.84063 26330.97056 1.107651748 1.069163994 1.698223313 1.039759406 1.296794693 0.96595557 0.918621922 1.077192317 1.227825634 1 14.68447308 -6.258252882 24.95750208 1.035287534 1.24677368 0.225364637 0.189355179 436.7350122 3420633.037 0.064591696 0.062084716 5.52E-07 6.258252882 0.211486146 SRTPT(ph)SPLEELTSLFSSGR ddPTM_HeLa_A486_30min_R1 1 SRTPTSPLEELTSLFSSGR 19 1 Q9P242;Q9P242-3 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 S(0.051)RT(0.068)PT(0.44)S(0.44)PLEELTSLFSSGR 96.679 0.00043695 61643000 15169 15408 13628 8063.2 21586 15112 19488 18786 12096 18775 TRUE FALSE FALSE 14105.73143 14187.01397 18905.12657 18771.53709 18878.4826 13247.63509 14611.89628 14508.8379 13144.49102 14073.6178 1.002281832 1.008057357 1.343302543 1.333810351 1.341409357 0.941309852 1.038247343 1.030924536 0.933980957 1 13.78070562 -6.274863835 24.95225398 0.993909988 1.209541924 0.449096789 0.120003164 841.557415 1564212.212 0.047435506 0.042072325 5.31E-07 6.274863835 0.215631935 SRTPTS(ph)PLEELTSLFSSGR ddPTM_HeLa_A485_30min_R1 1 SRTPTSPLEELTSLFSSGR 19 1 Q9P242;Q9P242-3 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 SRT(0.012)PT(0.319)S(0.669)PLEELTSLFSSGR 240.26 6.46E-46 71793000 17618 27880 24450 15703 30651 24312 36073 45026 22379 25119 TRUE FALSE FALSE 21537.06332 31140.32348 33495.07245 16560.81513 27599.27882 25584.93873 28365.70886 33983.3029 26870.26003 18857.29558 1.142107744 1.651367416 1.776239456 0.878217932 1.463586266 1.356766065 1.504229954 1.802130255 1.424926491 1 14.20283517 -6.771501397 22.8230106 1.499665966 1.389739353 0 0.299015939 343.8472524 779904.1425 0.123453026 0.08453709 1.69E-07 6.771501397 -0.109926613 SRTS(ph)PAPWK ddPTM_HeLa_A486_30min_R1 3 SRTSPAPWK 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.211)RT(0.211)S(0.579)PAPWK;S(0.122)RT(0.122)S(0.755)PAPWK;S(0.229)RT(0.229)S(0.542)PAPWK ;; 78.043 0.0046227 4241910000 3819900 4747150 3085910 1618370 4284430 4951320 5335700 5298170 4226610 4865200 TRUE FALSE FALSE 3552144.736 4370968.545 4280856.996 3767647.148 3747036.839 4340476.48 4000651.425 4091892.349 4592975.958 3646922.253 0.974011643 1.198536257 1.173827326 1.033103227 1.027451802 1.190175216 1.096993889 1.122012499 1.259411536 1 21.79824801 -6.27002354 24.94498631 1.139049108 1.090347642 0.074825016 0.088280829 1994.944484 5797154.626 0.030816366 0.027587133 5.37E-07 6.27002354 -0.048701466 SRTS(ph)PAPWKR ddPTM_HeLa_A485_30min_R1 1 SRTSPAPWKR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.082)RT(0.35)S(0.568)PAPWKR 54.199 0.029203 7398400000 97608 183990 128110 112890 210920 225330 270840 390270 168510 202210 TRUE FALSE FALSE 119320.5629 205506.03 175503.2201 119056.8948 189920.0642 237127.9304 212972.8214 294555.6706 202328.4113 151802.7684 0.786023629 1.353769975 1.156126611 0.784286717 1.251097501 1.56207909 1.402957427 1.94038405 1.332837428 1 17.21183858 -6.04188054 4.790578545 1.498546127 1.048539067 0.347282393 0.27014178 0.216348034 11.54849333 0.08697913 0.090113925 9.08E-07 6.04188054 -0.45000706 SRTS(ph)PAPWKR ddPTM_HeLa_A486_30min_R1 1 SRTSPAPWKR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.025)RT(0.161)S(0.814)PAPWKR 66.706 0.012038 5070600000 3696400 3317500 2345700 1548700 4455300 3086900 3920200 4285500 2716800 4248100 TRUE FALSE FALSE 3437301.448 3054609.218 3254017.86 3605451.867 3896474.73 2706069.663 2939324.496 3309785.202 2952294.411 3184348.11 1.079436459 0.959257315 1.021878811 1.132241747 1.223633408 0.849803341 0.92305376 1.039391765 0.927126781 1 21.60256663 -6.275568358 24.99901709 0.948785788 1.075706737 0.418427039 0.079568503 948.9111737 1678945.042 0.030281453 0.026840839 5.30E-07 6.275568358 0.126920949 SRTS(ph)PITR ddPTM_HeLa_A485_30min_R1 2 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.013)RT(0.022)S(0.965)PITR;S(0.006)RT(0.051)S(0.943)PITR ; 91.313 0.0018115 7587140000 169953 253340 250056 188475 255595 255127 249984 271103 195592 208293 TRUE FALSE FALSE 207758.4585 282965.9092 342562.1201 198770.912 230147.0644 268485.0552 196572.8762 204614.5642 234845.5203 156369.3884 1.32863894 1.80959913 2.190723667 1.271162559 1.471816617 1.716992423 1.257105871 1.308533379 1.501863777 1 17.25459859 -7.60666406 0.300326753 0.954350644 1.773738015 0.334120827 0.263935053 1.871189782 0.605535364 0.574712327 0.468950552 2.47E-08 7.60666406 0.819387371 SRTS(ph)PITR ddPTM_HeLa_A486_30min_R1 1 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.136)RT(0.045)S(0.819)PIT(0.001)R 80.014 0.0044451 566760000 85937 87265 95124 24930 107820 88223 127780 122380 78952 105070 TRUE FALSE FALSE 79913.26008 80349.80359 131958.5603 58038.29989 94296.21022 77338.94325 95808.09248 94516.74554 85795.62293 78759.78811 1.014645443 1.020188163 1.67545601 0.736902692 1.197263381 0.981959768 1.2164595 1.200063482 1.089332831 1 16.26517161 -8.014448213 21.70135714 0.999999973 1.132701296 0.029508786 0.227217952 612.7485288 920363.0615 0.210018294 0.05422649 9.67E-09 8.014448213 0.132701324 SRTS(ph)PVSR ddPTM_HeLa_A486_30min_R1 2 SRTSPVSR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.289)RT(0.164)S(0.547)PVSR;S(0.039)RT(0.105)S(0.856)PVSR ; 83.081 0.0033094 3748700000 621500 592990 658360 205890 818240 696110 620160 607510 758800 672680 TRUE FALSE FALSE 577936.0594 545999.3128 913294.6235 479322.3251 715608.7094 610231.0257 464989.4086 469193.2349 824573.395 504236.5496 1.146160587 1.082823752 1.81124241 0.950590205 1.41919246 1.21020784 0.92216522 0.930502232 1.635290809 1 18.94374117 -6.528097393 24.89570787 1.109053568 1.285204258 0.063930237 0.286801796 390.9180466 1864856.584 0.106893415 0.083076564 2.96E-07 6.528097393 0.176150689 SRTS(ph)PVTR ddPTM_HeLa_A485_30min_R1 2 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.004)RT(0.198)S(0.614)PVT(0.183)R;S(0.119)RT(0.119)S(0.763)PVTR ; 105.83 0.012115 4648940000 799468 1223598 1136515 932165 1327125 1104035 1419129 1628368 1115977 1261899 TRUE FALSE FALSE 977306.8985 1366687.142 1556959.193 983086.8136 1194991.775 1161840.565 1115920.496 1229008.195 1339943.348 947330.8028 1.031642691 1.442671491 1.643522187 1.037743955 1.261430296 1.226435963 1.177962854 1.297337943 1.414440809 1 19.85350877 -5.281507916 24.96670099 1.217050958 1.379618145 0.155121454 0.179712104 1520.161951 1891186.687 0.050639971 0.075210535 5.23E-06 5.281507916 0.162567188 SRTS(ph)PVTR ddPTM_HeLa_A486_30min_R1 2 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.046)RT(0.026)S(0.927)PVTR;S(0.405)RT(0.165)S(0.429)PVTR ; 78.903 0.0048568 17983200000 464460 513860 526610 126964 609820 519560 564220 487980 478260 493610 TRUE FALSE FALSE 431903.7525 473139.8622 730527.4951 295578.6084 533330.6893 455461.9697 423046.1883 376877.6065 519715.9619 370006.8431 1.16728585 1.278732734 1.97436212 0.798846329 1.441407636 1.23095553 1.14334693 1.018569287 1.404611757 1 18.49719243 -5.282160691 24.99988313 1.164478867 1.453987672 0.237124765 0.265509159 1256.666221 1516141.946 0.073357505 0.108941501 5.22E-06 5.282160691 0.289508805 SRTS(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_A485_30min_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 SRT(0.008)S(0.992)VQTEDDQLIAGQSAR;S(0.069)RT(0.16)S(0.764)VQT(0.007)EDDQLIAGQSAR ; 237.5 1.91E-36 341920000 233000 302530 256970 225000 344010 297700 356520 408850 312060 411900 TRUE FALSE FALSE 284830.0462 337908.2518 352033.8964 237291.1803 309759.1565 313287.1117 280346.5895 308578.8964 374687.5796 309220.9105 0.921121556 1.092772967 1.138454369 0.767384004 1.001740652 1.013149826 0.906622353 0.997923769 1.211714884 1 18.23827836 -7.577957938 14.1754047 1.105616881 0.980064431 0.181564862 0.107641903 2.844603183 728.0057087 0.072422337 0.027364184 2.64E-08 7.577957938 -0.12555245 SRTS(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_A486_30min_R1 2 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 S(0.001)RT(0.007)S(0.97)VQT(0.022)EDDQLIAGQSAR;S(0.045)RT(0.099)S(0.844)VQT(0.011)EDDQLIAGQSAR ; 213.46 3.04E-25 817490000 460530 478420 343620 173685 498650 462230 526350 547540 447090 521430 TRUE FALSE FALSE 428249.2252 440508.2568 476678.8665 404347.4576 436104.6673 405204.7622 394651.6628 422877.0947 485844.1212 390860.5341 1.095657371 1.12702158 1.219562542 1.034505718 1.115755184 1.036699096 1.009699441 1.081913004 1.243011455 1 18.57629439 -5.279463972 24.95346688 1.075367437 1.14537462 0.178601029 0.071588044 1415.841731 1960106.257 0.020433024 0.030374531 5.25E-06 5.279463972 0.070007184 SRTSPIT(ph)R ddPTM_HeLa_A486_30min_R1 1 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.001)RT(0.144)S(0.342)PIT(0.512)R 87.942 0.0096549 1272000000 992730 1139700 1049200 378530 1321900 1006200 1257500 1198900 960590 1136800 TRUE FALSE FALSE 923144.7535 1049386.021 1455478.339 881236.9698 1156094.976 882065.2743 942860.1995 925936.6418 1043854.715 852137.8807 1.083327915 1.231474442 1.708031495 1.034148334 1.356699429 1.035120365 1.106464366 1.086604249 1.224983349 1 19.70072736 -6.26235547 24.99355822 1.097036598 1.289705508 0.222621161 0.179051578 134.2717478 3663280.714 0.061268754 0.057214574 5.47E-07 6.26235547 0.192668911 SRTSPITR ddPTM_HeLa_A485_30min_R1 1 SRTSPITR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 74.92 0.016754 80581000 21112 45541 52622 28984 46427 36280 40661 48803 36857 37295 FALSE FALSE TRUE 25808.29156 50866.6238 72089.06758 30567.32253 41804.56486 38179.5647 31973.44518 36833.98773 44253.86183 27998.04286 0.92178913 1.816792125 2.574789529 1.091766402 1.49312454 1.363651198 1.141988579 1.315591519 1.580605546 1 14.77303836 SRTSPVT(ph)R ddPTM_HeLa_A485_30min_R1 1 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.079)RT(0.146)S(0.146)PVT(0.628)R 73.887 0.030974 10371000000 908240 1475400 1371000 1107900 1516600 1242700 1569600 1907700 1197400 1463600 TRUE FALSE FALSE 1110274.855 1647935.196 1878189.952 1168421.772 1365601.979 1307765.85 1234242.138 1439833.584 1437707.197 1098751.456 1.010487721 1.499825267 1.709385633 1.063408622 1.242867049 1.190229004 1.123313313 1.310427009 1.308491734 1 20.06743365 -5.29428889 24.99937622 1.190960282 1.415892424 0.239881699 0.185910793 913.5093963 695203.8762 0.05253483 0.077928543 5.08E-06 5.29428889 0.224932142 SRTSPVT(ph)R ddPTM_HeLa_A486_30min_R1 1 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.003)RT(0.01)S(0.01)PVT(0.977)R 78.932 0.022356 9766500000 1589000 1546500 1512900 644770 1871700 1736100 1795600 1797500 1585700 1705200 TRUE FALSE FALSE 1477619.306 1423949.708 2098735.397 1501057.145 1636933.933 1521917.633 1346321.888 1388248.489 1723149.753 1278206.821 1.156009561 1.114021365 1.641937253 1.174346061 1.280648723 1.19066618 1.053289551 1.086090659 1.348099325 1 20.28568986 -6.416927762 3.444253793 1.128066879 1.279750697 0.16343067 0.160548844 0.490364293 10.81609884 0.061493802 0.05249006 3.83E-07 6.416927762 0.151683817 SRTSPVTR ddPTM_HeLa_A485_30min_R1 4 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 ;;; ;;; 85.676 0.0062149 824863000 254649 394182 359514 296781 427222 345301 437314 492489 344186 409637 FALSE FALSE TRUE 311294.7915 440278.156 492513.1892 312993.3945 384686.2776 363380.4264 343878.2914 371705.3006 413260.9731 307522.0347 1.012268249 1.431696289 1.601554145 1.017791765 1.250922647 1.18164029 1.118223257 1.208711112 1.343841828 1 18.23033026 -5.280095531 24.97866218 1.171787097 1.356825293 0.208961524 0.166624632 1255.272464 1680677.801 0.046701275 0.069403774 5.25E-06 5.280095531 0.185038196 SRTSPVTR ddPTM_HeLa_A486_30min_R1 3 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 ;; ;; 109.88 0.001583 506902000 361179 340496 325077 134575 369169 339282 395321 357891 323493 345992 FALSE FALSE TRUE 335862.2172 313513.8569 450955.5203 313297.401 322864.3817 297424.8364 296407.5045 276407.032 351533.6337 259353.3512 1.294998564 1.208829018 1.73876882 1.20799442 1.244882243 1.146793882 1.142871311 1.065754619 1.355423526 1 17.98455949 -5.495384839 24.97744011 1.167066909 1.406948477 0.34999044 0.15575437 822.2523581 746993.0651 0.043157058 0.063822114 3.20E-06 5.495384839 0.239881568 SRVPVRPPQQYS(ph)DDEDDYEDDEEDDVQNTNSALR ddPTM_HeLa_A485_30min_R1 4 SRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALR 34 2 F8W6N3;Q92560 F8W6N3 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 S(0.023)RVPVRPPQQYS(0.977)DDEDDYEDDEEDDVQNTNSALR;SRVPVRPPQQYS(1)DDEDDYEDDEEDDVQNTNSALR;SRVPVRPPQQYS(1)DDEDDYEDDEEDDVQNTNSALR;SRVPVRPPQQYS(1)DDEDDYEDDEEDDVQNTNSALR ;;; 471.53 2.50E-285 2954210000 284379 366204 341642 317631 466986 385766 496290 571521 370303 473106 TRUE FALSE FALSE 347638.1275 409028.3722 468029.5927 334982.3772 420491.2342 405964.1113 390253.5872 431354.5786 444619.4155 355169.3811 0.978795318 1.151643115 1.317764474 0.943162319 1.183917467 1.14301551 1.098781618 1.214503844 1.251851762 1 18.43814769 -7.250318987 24.22813929 1.174883356 1.12272086 0.012939611 0.116035527 1819.21914 3963573.922 0.053931423 0.030690812 5.62E-08 7.250318987 -0.052162495 SRVPVRPPQQYS(ph)DDEDDYEDDEEDDVQNTNSALR ddPTM_HeLa_A486_30min_R1 2 SRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALR 34 2 F8W6N3;Q92560 F8W6N3 BAP1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase BAP1 1 0 S(0.004)RVPVRPPQQYS(0.996)DDEDDYEDDEEDDVQNTNSALR;SRVPVRPPQQYS(1)DDEDDYEDDEEDDVQNTNSALR ; 466.53 6.70E-285 1374610000 285869 301901 221575 109043 329780 248245 357068 321765 245326 308091 TRUE FALSE FALSE 265831.0593 277977.2653 307374.774 253857.6147 288415.9173 217619.0559 267725.8097 248506.1336 266591.0552 230943.0083 1.151067795 1.203661749 1.330955097 1.09922191 1.248861871 0.942306318 1.159272202 1.076049608 1.154358633 1 17.81717734 -6.230284193 24.99480783 1.076955081 1.207508009 0.414782741 0.082883128 715.3311432 573887.5791 0.026418821 0.026416426 5.88E-07 6.230284193 0.130552928 SRVS(ph)VS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 SRVSVSPGR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(0.001)RVS(0.999)VS(1)PGR 89.46 0.015009 16974000000 13374000 17578000 18351000 16101000 21220000 16636000 20099000 20986000 17358000 20429000 TRUE FALSE FALSE 16349000.16 19633594.19 25139798.55 16980556.86 19107262.29 17507035.24 15804684.46 15839150.6 20841591.38 15336426.27 1.06602411 1.280193563 1.639221427 1.107204284 1.245874492 1.141532905 1.030532419 1.032779757 1.358960101 1 23.87045901 SRVS(ph)VSPGR ddPTM_HeLa_A485_30min_R1 1 SRVSVSPGR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 S(0.083)RVS(0.459)VS(0.459)PGR 55.452 0.019896 348660000 73866 259840 478360 71785 267360 154920 189340 153080 250860 90728 TRUE FALSE FALSE 90297.23687 290226.0277 655325.2702 75706.43278 240740.6996 163031.3716 148885.9622 115536.89 301205.301 68111.17933 1.325732982 4.261063023 9.621405424 1.111512582 3.534525492 2.393606648 2.185925478 1.69629848 4.42225937 1 16.05560399 SRVS(ph)VVR ddPTM_HeLa_A486_30min_R1 2 SRVSVVR 7 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 S(0.005)RVS(0.995)VVR;S(0.003)RVS(0.997)VVR ; 68.557 0.010848 334670000 231630 267360 178233 97229 265160 221380 264830 267880 187248 249000 TRUE FALSE FALSE 215393.9331 246173.4199 247249.5908 226354.0257 231901.1603 194068.3864 198566.7329 206889.5718 203478.8074 186648.7793 1.154006653 1.318912563 1.324678317 1.212727062 1.242446702 1.039751705 1.063852299 1.108443209 1.090169505 1 17.50996655 -6.230441019 7.012189501 1.067389582 1.256967103 0.758071266 0.053570467 0.108180522 19.14717462 0.018180194 0.017891428 5.88E-07 6.230441019 0.189577521 SRVSVS(ph)PGR ddPTM_HeLa_A485_30min_R1 5 SRVSVSPGR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 S(0.007)RVS(0.017)VS(0.977)PGR;S(0.003)RVS(0.045)VS(0.951)PGR;S(0.008)RVS(0.345)VS(0.647)PGR;SRVS(0.007)VS(0.993)PGR;S(0.052)RVS(0.281)VS(0.667)PGR ;;;; 88.021 0.0018874 2244618000 391546 801549 739960 424416 790534 757010 879637 1251136 516056 587623 TRUE FALSE FALSE 478644.0569 895283.183 1013701.996 447600.7714 711825.6592 796645.873 691695.369 944292.9343 619623.7057 441139.4005 1.085017698 2.029479076 2.297917609 1.014647005 1.613607078 1.805882386 1.567974586 2.140577181 1.404598422 1 18.7508751 -8.005253614 24.78535087 0.999999948 1.704374749 0.232707902 0.393030992 233.5925646 1102042.564 0.374110446 0.096594902 9.88E-09 8.005253614 0.704374802 SRVSVS(ph)PGR ddPTM_HeLa_A486_30min_R1 3 SRVSVSPGR 9 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 SRVS(0.057)VS(0.943)PGR;SRVS(0.044)VS(0.956)PGR;S(0.022)RVS(0.181)VS(0.797)PGR ;; 93.623 0.0014428 1289370000 408336 409084 395948 173579 568120 317762 474750 474408 313213 477455 TRUE FALSE FALSE 379713.755 376666.694 549269.6695 404100.6842 496861.0921 278559.7552 355962.5286 366395.6547 340362.555 357897.1603 1.06095772 1.05244393 1.534713684 1.129097207 1.388278945 0.778323457 0.994594448 1.023745632 0.951006582 1 18.44918557 -6.258796631 24.99975001 0.953834404 1.234040513 0.468838016 0.15087554 225.2799965 2131098.388 0.051399051 0.049133574 5.51E-07 6.258796631 0.28020611 SRWDETPASQMGGST(ph)PVLTPGK ddPTM_HeLa_A485_30min_R1 2 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 SRWDETPASQMGGS(0.479)T(0.521)PVLTPGK;SRWDETPASQMGGS(0.059)T(0.94)PVLTPGK ; 187.92 1.34E-19 845230000 518040 526400 483650 709840 749550 542630 774580 587480 578440 925150 TRUE FALSE FALSE 633276.2108 587957.9009 662572.2614 748616.7618 674922.1702 571041.2677 609084.6553 443399.6089 694527.6022 694527.1311 0.911809175 0.846558579 0.953990466 1.077879795 0.971772217 0.822201527 0.876977483 0.638419421 1.000000678 1 19.40567153 -6.259778322 24.77411163 0.845512138 0.953581087 0.113985373 0.110060902 234.3258172 3494911.094 0.037256952 0.035384098 5.50E-07 6.259778322 0.108068949 SRWDETPASQMGGST(ph)PVLTPGK ddPTM_HeLa_A486_30min_R1 2 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 SRWDETPASQMGGS(0.39)T(0.61)PVLTPGK;SRWDETPASQMGGS(0.038)T(0.962)PVLTPGK ; 220.92 8.01E-36 1036000000 1261540 1235250 704460 433980 1158880 1260980 1201850 1368370 1087150 1399930 TRUE FALSE FALSE 1173112.561 1137364.291 977245.7781 1010327.372 1013522.464 1105413.108 901134.4181 1056822.022 1181385.037 1049378.416 1.117911845 1.083845707 0.931261558 0.9627865 0.965831247 1.053397984 0.858731611 1.007093348 1.125795061 1 20.00110359 -4.628507225 5.916271252 0.984647358 1.109393162 0.314345798 0.067145976 0.220965773 10.49820816 0.017290188 0.047280779 2.35E-05 4.628507225 0.124745804 SS(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_A485_30min_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 S(0.443)S(0.557)DEENGPPS(0.7)S(0.3)PDLDR 71.929 0.016564 831190000 283230 347490 310330 324670 388810 332490 432880 424110 321080 460790 TRUE FALSE FALSE 346233.5364 388125.9327 425133.9809 342405.9 350098.7112 349898.6623 340391.6517 320096.3575 385517.8109 345923.5332 1.000896161 1.121999215 1.228982535 0.989831183 1.012069656 1.011491352 0.984008369 0.925338483 1.114459624 1 18.40009364 -5.305907275 24.95182223 1.001854298 1.117763409 0.367144924 0.067263607 431.2028852 241955.639 0.018797548 0.027881402 4.94E-06 5.305907275 0.11590911 SS(ph)DEENGPPSS(ph)PDLDR ddPTM_HeLa_A485_30min_R1 2 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 S(0.443)S(0.557)DEENGPPS(0.066)S(0.934)PDLDR;S(0.171)S(0.829)DEENGPPS(0.001)S(0.999)PDLDR ; 313.1 1.49E-86 832480000 815110 881110 851050 965960 1011090 838670 1103220 998500 842090 1307600 TRUE FALSE FALSE 996428.4074 984148.1499 1165888.81 1018727.949 910422.3294 882581.4644 867508.0345 753616.3094 1011089.739 981639.3846 1.015065637 1.002555689 1.187695633 1.03778227 0.927450899 0.899089297 0.883733933 0.767711974 1.030001195 1 19.90483361 -5.760249167 3.638839431 0.901223572 1.069015717 0.422616311 0.081314288 0.199883536 5.668746335 0.025364022 0.031336661 1.74E-06 5.760249167 0.167792145 SS(ph)DEENGPPSS(ph)PDLDR ddPTM_HeLa_A486_30min_R1 2 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 S(0.012)S(0.988)DEENGPPS(0.004)S(0.996)PDLDR;S(0.133)S(0.867)DEENGPPS(0.003)S(0.997)PDLDR ; 410.55 3.81E-152 1809030000 847750 993360 621710 300570 881610 876390 1009640 1015070 746470 967070 TRUE FALSE FALSE 788327.1028 914642.5358 862452.762 699742.15 771030.2531 768269.9123 757017.3931 783960.7198 811174.6206 724909.3774 1.08748366 1.261733624 1.18973873 0.965282243 1.063622954 1.059815111 1.044292455 1.08146031 1.119001417 1 19.46744113 -5.235109372 24.20044302 1.052067265 1.187860221 0.53608376 0.05601522 373.3661547 343167.4329 0.014828957 0.025672241 5.82E-06 5.235109372 0.135792956 SS(ph)DGS(ph)LSHEEDLAK ddPTM_HeLa_A485_30min_R1 2 SSDGSLSHEEDLAK 14 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 S(0.423)S(0.577)DGS(0.908)LS(0.092)HEEDLAK;S(0.392)S(0.608)DGS(1)LSHEEDLAK ; 153.14 8.36E-08 765100000 1499730 1334770 976040 2073900 1763670 1776950 2489100 2464600 1373140 2956500 TRUE FALSE FALSE 1833339.764 1490859.741 1337117.812 2187191.906 1588072.822 1869988.354 1957283.451 1860152.986 1648716.603 2219498.96 0.826015149 0.671710042 0.602441288 0.985443987 0.715509604 0.842527249 0.881858242 0.838095903 0.742832789 1 21.0818026 -14 0.076922001 1.669399514 0.574686686 0.284847638 0.103499581 346.9445762 1.896031604 40.31323654 4.103368481 1.00E-14 14 -1.094712828 SS(ph)DGS(ph)LSHEEDLAK ddPTM_HeLa_A486_30min_R1 1 SSDGSLSHEEDLAK 14 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 S(0.126)S(0.874)DGS(0.959)LS(0.041)HEEDLAK 236.12 5.79E-32 0 670140 702860 341230 310610 675220 825170 920690 868810 549460 956960 TRUE FALSE FALSE 623166.6466 647162.8138 473363.3945 723115.7774 590527.6114 723368.9151 690323.6239 671000.929 597087.6352 717330.9872 0.868729579 0.902181594 0.659895366 1.008064325 0.823228917 1.008417213 0.962350207 0.935413276 0.832373961 1 19.45227943 -5.295127897 24.9999754 0.934956381 0.819459927 0.317753564 0.085708812 781.4571025 579911.36 0.023544953 0.03492498 5.07E-06 5.295127897 -0.115496454 SS(ph)DTEEESR ddPTM_HeLa_A485_30min_R1 2 SSDTEEESR 9 0 C9J8Q2;C9JVB3;F8WDM0;C9J367;C9J713;Q96IZ7-2;Q96IZ7 C9J8Q2 RSRC1 Serine/Arginine-related protein 53 1 0 S(0.086)S(0.914)DTEEESR;S(0.057)S(0.943)DTEEESR ; 255.11 2.55E-21 217953000 334860 283900 110409 571990 116974 460230 213139 262600 300460 466150 TRUE FALSE FALSE 409348.4517 317099.6354 151253.8836 603236.3653 105327.6578 484326.9311 167600.1115 198196.9383 360759.566 349947.3839 1.169742855 0.906135179 0.432218929 1.723791613 0.300981412 1.383999291 0.47892946 0.566362109 1.030896594 1 18.4167785 -6.795300453 24.9999508 0.732910953 0.959716416 0.055187094 0.421351676 581.6252406 429414.3045 0.166681773 0.112383602 1.60E-07 6.795300453 0.226805463 SS(ph)DTEENVK ddPTM_HeLa_A485_30min_R1 1 SSDTEENVK 9 0 H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 1 0 S(0.248)S(0.752)DTEENVK 194.49 6.40E-09 327670000 859830 880280 564410 1052600 784800 927510 1267500 1205000 951560 1745100 TRUE FALSE FALSE 1051096.217 983221.0886 773208.7461 1110100.873 706662.5564 976072.9894 996688.2705 909471.8606 1142529.364 1310078.686 0.802315333 0.75050537 0.590200233 0.847354349 0.539404666 0.745049133 0.760785044 0.69421163 0.872107436 1 20.32122204 -7.961212878 3.070311555 0.999215891 0.713803841 0.524524824 0.087690691 0.166866451 3.525419656 0.080185179 0.021482228 1.09E-08 7.961212878 -0.28541205 SS(ph)DTEENVK ddPTM_HeLa_A486_30min_R1 1 SSDTEENVK 9 0 H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 1 0 S(0.224)S(0.776)DTEENVK 209.95 3.36E-10 750430000 1551300 1401800 906680 614110 1112000 1939700 1646100 1459700 1532100 2505300 TRUE FALSE FALSE 1442561.881 1290716.263 1257770.778 1429679.115 972522.591 1700399.535 1234228.369 1127358.175 1664903.662 1877956.573 0.76815508 0.687298248 0.669754986 0.761295088 0.51786213 0.905452 0.657218802 0.600311099 0.886550672 1 20.84073227 -7.951248269 5.039247312 0.998872748 0.697480654 0.517318321 0.098456555 0.125728354 6.670986385 0.090277393 0.023540426 1.12E-08 7.951248269 -0.301392094 SS(ph)DTEENVKR ddPTM_HeLa_A485_30min_R1 2 SSDTEENVKR 10 1 H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 1 0 S(0.035)S(0.964)DTEENVKR;S(0.194)S(0.804)DT(0.002)EENVKR ; 85.973 0.002277 286760000 247250 252720 199328 273130 256480 271570 363680 373100 255100 443650 TRUE FALSE FALSE 302249.9095 282273.4056 273067.7219 288050.4003 230943.9506 285788.9853 285976.797 281596.64 306296.2301 333056.2198 0.907504174 0.847524799 0.819884769 0.864870203 0.69340831 0.858080313 0.858644217 0.845492813 0.919653235 1 18.3454062 -8.004363283 1.367088318 1.000562365 0.830520874 0.496274124 0.052707107 0.387701282 1.633808411 0.051056415 0.0154567 9.90E-09 8.004363283 -0.170041491 SS(ph)DTEENVKR ddPTM_HeLa_A486_30min_R1 1 SSDTEENVKR 10 1 H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBT0 MYC Myc proto-oncogene protein 1 0 S(0.221)S(0.755)DT(0.024)EENVKR 132.86 3.74E-05 155280000 275760 256380 150740 101930 229470 285990 297340 259090 214650 403170 TRUE FALSE FALSE 256430.648 236063.5151 209110.565 237298.1913 200687.7329 250707.4615 222942.3871 200100.8629 233256.0348 302213.6078 0.848507947 0.781114778 0.69192968 0.78520022 0.664059221 0.829570393 0.737698043 0.662117316 0.771825056 1 18.2052091 -8.041918786 23.24736178 1.000000001 0.747628362 0.600645378 0.060762708 2579.72184 1430662.773 0.057745294 0.014909771 9.08E-09 8.041918786 -0.252371639 SS(ph)FSITR ddPTM_HeLa_A485_30min_R1 1 SSFSITR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.132)S(0.862)FS(0.006)ITR 115.71 0.0024789 61369000 74259 106620 104050 86585 130070 94639 122690 118590 88605 117280 TRUE FALSE FALSE 90777.65836 119088.2815 142542.4249 91314.91931 117119.7741 99594.1517 96476.27921 89505.61656 106387.2108 88044.25438 1.031045796 1.352595719 1.61898611 1.037147966 1.33023756 1.131182863 1.095770302 1.016598041 1.208337915 1 16.42594124 -6.294129933 1.292513615 1.07452564 1.301266164 0.228237252 0.165986925 0.653710948 2.220126705 0.082289017 0.072129018 5.08E-07 6.294129933 0.226740524 SS(ph)FSITR ddPTM_HeLa_A486_30min_R1 1 SSFSITR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.156)S(0.758)FS(0.086)ITR 103.55 0.0037483 71326000 51907 63245 53354 29311 75806 68692 76975 77486 56802 68708 TRUE FALSE FALSE 48268.58735 58233.23587 74014.09767 68237.4893 66297.70462 60217.47945 57715.04084 59844.12931 61725.64309 51503.06959 0.937198263 1.130675052 1.43708129 1.324920822 1.287257345 1.169201757 1.120613612 1.161952672 1.198484743 1 15.6523708 -6.475164371 5.709241148 1.134917523 1.235607096 0.112363113 0.132097634 0.520249264 40.92896443 0.051553475 0.044301017 3.35E-07 6.475164371 0.100689573 SS(ph)FSQHAR ddPTM_HeLa_A485_30min_R1 3 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.367)S(0.632)FS(0.001)QHAR;S(0.369)S(0.629)FS(0.002)QHAR;S(0.359)S(0.633)FS(0.007)QHAR ;; 167.12 2.17E-05 3546670000 1126130 1786030 1898210 669405 2255810 1286810 1829900 1725010 1493010 1282950 TRUE FALSE FALSE 1376633.733 1994890.672 2600436.87 705972.9001 2031213.636 1354185.382 1438926.916 1301948.593 1792643.412 963134.1759 1.429327053 2.071248972 2.699973623 0.732995379 2.108962268 1.406019447 1.494004628 1.351783194 1.861260307 1 19.87737727 -5.255466323 24.99851705 1.467743552 2.06728972 0.285318485 0.463670525 662.9250873 2774475.371 0.122217138 0.204830444 5.55E-06 5.255466323 0.599546168 SS(ph)FSQHAR ddPTM_HeLa_A486_30min_R1 1 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.37)S(0.629)FS(0.001)QHAR 155 0.00010284 872710000 606460 658460 629400 25232 705680 545950 605150 539850 616830 310040 TRUE FALSE FALSE 563950.2858 606281.2315 873120.5359 58741.37115 617167.0342 478596.2398 453735.0694 416937.9398 670297.321 232403.966 2.426594931 2.608738749 3.756908933 0.252755459 2.655578753 2.059329056 1.952355105 1.794022482 2.884190544 1 17.82627516 -5.22643994 24.99949263 1.885664685 2.898546299 0.300442405 0.782760379 830.3419806 593097.958 0.203864952 0.353085856 5.94E-06 5.22643994 1.012881614 SS(ph)GFISELPSEEGK ddPTM_HeLa_A485_30min_R1 3 SSGFISELPSEEGK 14 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.115)S(0.885)GFISELPSEEGK;S(0.236)S(0.764)GFISELPSEEGK;S(0.142)S(0.858)GFISELPSEEGK ;; 370.76 2.12E-109 517150000 1238270 1053400 663140 1766880 1392120 1167610 1867870 1733820 914060 2235390 TRUE FALSE FALSE 1513718.89 1176585.967 908463.0816 1863400.18 1253515.645 1228744.254 1468784.315 1308597.926 1097503.458 1678148.412 0.902017294 0.701121521 0.541348474 1.110390575 0.74696352 0.732202376 0.875241012 0.779786768 0.653996661 1 20.67843888 -11.24805586 2.299140778 1.807623682 0.782831144 0.164899142 0.14679503 5793182.059 1164169.849 24303269.55 0.036263801 5.65E-12 11.24805586 -1.024792538 SS(ph)GFISELPSEEGK ddPTM_HeLa_A486_30min_R1 3 SSGFISELPSEEGK 14 0 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.119)S(0.881)GFISELPSEEGK;S(0.185)S(0.815)GFISELPSEEGK;S(0.189)S(0.811)GFISELPSEEGK ;; 383.76 4.31E-125 448140000 1569190 1470840 763440 716810 1311530 1611680 2045810 1862350 1158930 1924760 TRUE FALSE FALSE 1459197.884 1354285.282 1059064.414 1668769.906 1147025.678 1412847.308 1533926.7 1438333.56 1259386.986 1442787.568 1.011374035 0.938658824 0.734040435 1.156628975 0.795006627 0.979248324 1.063168781 0.996912915 0.872884556 1 20.46042747 -6.492084026 24.88571579 0.988444973 0.9255355 0.053328619 0.115670177 1978.678371 1599004.787 0.039703958 0.034975173 3.22E-07 6.492084026 -0.062909474 SS(ph)GGGPR ddPTM_HeLa_A485_30min_R1 1 SSGGGPR 7 0 Q9BZR8-3 Q9BZR8-3 1 0 S(0.127)S(0.873)GGGPR 88.734 0.0071082 153870000 0 3277.6 4892.6 0 3405.4 4719.9 0 4319.1 2427.4 6215 TRUE FALSE FALSE 0 3660.886809 6702.576338 0 3066.346419 4967.026666 0 3259.833953 2914.556915 4665.714879 0 0.784635775 1.436559351 0 0.657208273 1.064579983 0 0.698678346 0.624675316 1 12.18788243 -11.59501013 1.136667338 2.89288749 0.601172384 0.069475152 0.452072448 86744.58957 5424.886894 415701.4723 0.131291358 2.54E-12 11.59501013 -2.291715106 SS(ph)GGGPR ddPTM_HeLa_A486_30min_R1 1 SSGGGPR 7 0 Q9BZR8-3 Q9BZR8-3 1 0 S(0.153)S(0.847)GGGPR 79.454 0.013184 197340000 3401 3111.2 2331.5 1640.7 5510.3 3979.6 3658 3777.2 2740.9 4856.7 TRUE FALSE FALSE 3162.607463 2864.657181 3234.31924 3819.632516 4819.146792 3488.637414 2742.72971 2917.214016 2978.483419 3640.550708 0.868716773 0.786874682 0.88841483 1.049190857 1.323741153 0.958271892 0.753383191 0.801311189 0.818140896 1 11.82994099 -9.809467253 4.292558998 1.000000571 0.920744829 0.023443706 0.159620783 58965979.02 149243410.3 605.9523142 0.044785705 1.55E-10 9.809467253 -0.079255742 SS(ph)GGGYSGDR ddPTM_HeLa_A485_30min_R1 1 SSGGGYSGDR 10 0 Q92804-2;Q92804;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 1 0 S(0.216)S(0.784)GGGYSGDR 80.834 0.0071171 117640000 48897 65029 53249 55751 52350 51540 53947 59663 55393 66778 TRUE FALSE FALSE 59773.96896 72633.57587 72948.02098 58796.53596 47137.85019 54238.5547 42420.78274 45030.5557 66509.86701 50131.47356 1.192344145 1.448861777 1.455134186 1.172846753 0.940284553 1.0819262 0.846190621 0.898249194 1.326708798 1 15.61342902 -5.503130013 3.999792829 1.006648897 1.370782767 0.554936731 0.140076796 0.155296461 5.587337058 0.041396094 0.059339227 3.14E-06 5.503130013 0.364133871 SS(ph)GGREDLESSGLQR ddPTM_HeLa_A485_30min_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 S(0.024)S(0.656)GGREDLES(0.16)S(0.16)GLQR 144.41 1.16E-06 1283600000 583490 693170 660640 670550 993710 718380 859450 962160 723830 942230 TRUE FALSE FALSE 713285.3375 774230.2017 905038.2275 707180.4486 894772.7433 755993.266 675821.4864 726188.7514 869096.0416 707349.4015 1.008391802 1.094551293 1.279478325 0.999761146 1.264965718 1.068769217 0.955428088 1.026633726 1.228665833 1 19.4320635 -6.502665537 24.90170029 1.048786702 1.132448528 0.103814733 0.108422327 1644.413587 2025842.871 0.037994988 0.033079612 3.14E-07 6.502665537 0.083661826 SS(ph)GGREDLESSGLQR ddPTM_HeLa_A486_30min_R1 2 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 S(0.038)S(0.962)GGREDLESSGLQR;S(0.197)S(0.803)GGREDLESSGLQR ; 192.32 2.24E-18 2713200000 310679 403574 371804 152126 498400 386340 444640 465320 345506 359728 TRUE FALSE FALSE 288902.0064 371593.3264 515776.4661 354157.016 435886.0246 338677.2988 333386.3691 359376.7939 375454.7383 269649.7674 1.071397203 1.37805914 1.912764365 1.313396334 1.616489526 1.255989583 1.236368095 1.332753955 1.39237924 1 18.04072726 -6.290915783 23.52611573 1.263849588 1.471141087 0.183446955 0.223875286 648.2584859 517393.9808 0.079720412 0.070322468 5.12E-07 6.290915783 0.207291499 SS(ph)GLS(ph)TPVPPSAGHLAHVR ddPTM_HeLa_A485_30min_R1 3 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 2 0 S(0.44)S(0.56)GLS(0.56)T(0.44)PVPPSAGHLAHVR;S(0.447)S(0.553)GLS(0.553)T(0.447)PVPPSAGHLAHVR;S(0.469)S(0.531)GLS(0.531)T(0.469)PVPPSAGHLAHVR ;; 90.397 8.55E-05 278490000 175574 272824 332733 144567 356816 226128 343670 407758 237016 229239 TRUE FALSE FALSE 214629.8306 304728.3935 455824.7829 152464.3291 321290.1462 237967.7124 270242.097 307754.7112 284582.9372 172093.9361 1.247166724 1.770709651 2.648697526 0.885936673 1.866946352 1.382778021 1.570317369 1.788294917 1.653648836 1 17.39283674 -5.276770567 24.99235239 1.502171031 1.877043278 0.169180881 0.434993629 1589.306853 2590827.777 0.120727066 0.179795429 5.29E-06 5.276770567 0.374872247 SS(ph)GLS(ph)TPVPPSAGHLAHVR ddPTM_HeLa_A486_30min_R1 1 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 2 0 S(0.458)S(0.542)GLS(0.542)T(0.458)PVPPSAGHLAHVR 94.463 0.00042855 180480000 49550 51204 45540 7343.2 82233 54492 70349 74221 44967 40274 TRUE FALSE FALSE 46076.80088 47146.40856 63174.3076 17095.3407 71918.57035 47769.33107 52746.93612 57322.49853 48864.77577 30189.12826 1.526271328 1.561701555 2.092617815 0.566274738 2.38226721 1.582335557 1.747216272 1.898779522 1.618621622 1 14.88174148 -8.051050541 20.74834648 0.999999991 1.672568902 0.166164506 0.447501914 2860.721891 1162677.621 0.40761582 0.105245952 8.89E-09 8.051050541 0.672568911 SS(ph)GLST(ph)PVPPSAGHLAHVR ddPTM_HeLa_A485_30min_R1 3 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 2 0 S(0.462)S(0.537)GLS(0.021)T(0.98)PVPPSAGHLAHVR;S(0.446)S(0.55)GLS(0.149)T(0.854)PVPPSAGHLAHVR;S(0.434)S(0.566)GLS(0.192)T(0.808)PVPPSAGHLAHVR ;; 138.28 6.29E-10 593520000 194841 297501 274758 158875 430101 288768 459818 535856 248021 298111 TRUE FALSE FALSE 238182.7083 332291.154 376402.4178 167553.939 387278.6343 303887.446 361574.1279 404436.4758 297796.5397 223797.414 1.064278197 1.484785494 1.68188904 0.748685769 1.73048753 1.357868442 1.615631394 1.807154375 1.330652282 1 17.77183384 SS(ph)GLVQR ddPTM_HeLa_A485_30min_R1 1 SSGLVQR 7 0 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 1 0 S(0.111)S(0.889)GLVQR 131.22 0.0016634 300700000 186780 257940 219930 240990 353060 238690 289810 340600 212120 325240 TRUE FALSE FALSE 228328.5666 288103.8392 301291.2591 254154.6735 317908.1067 251187.4393 227889.726 257067.316 254690.5383 244163.6536 0.935145601 1.179962025 1.233972602 1.040919358 1.302028791 1.028766713 0.933348279 1.052848416 1.043114053 1 17.89748893 -6.493722942 24.94640109 1.007349662 1.143086744 0.293337595 0.098711572 837.6886354 716747.8545 0.033950923 0.029890104 3.21E-07 6.493722942 0.135737082 SS(ph)GLVQR ddPTM_HeLa_A486_30min_R1 3 SSGLVQR 7 0 D6REM1;Q9H4A6 D6REM1 GOLPH3 Golgi phosphoprotein 3 1 0 S(0.18)S(0.82)GLVQR;S(0.282)S(0.718)GLVQR;S(0.223)S(0.777)GLVQR ;; 127.68 0.0017196 500380000 776430 835730 599900 309066 898040 816620 1009990 1081180 737490 875470 TRUE FALSE FALSE 722006.2665 769503.7111 832197.3459 719521.2673 785399.4493 715873.7272 757279.8194 835018.916 801416.227 656246.6136 1.100205702 1.172583134 1.268116785 1.096419017 1.196805337 1.090860832 1.153956156 1.272416343 1.221211981 1 19.32387855 -13.39259892 7.210701893 1.169452122 1.165802318 0 0.082629367 0 0 0 0.018249766 4.05E-14 13.39259892 -0.003649804 SS(ph)GSETEQVVDFSDR ddPTM_HeLa_A485_30min_R1 1 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 S(0.001)S(0.981)GS(0.017)ETEQVVDFSDR 296.34 2.92E-67 573170000 334000 399710 316390 236210 349640 347790 390830 380880 295970 393770 TRUE FALSE FALSE 408297.1477 446452.6075 433435.8271 249113.5542 314828.6139 365999.7466 307325.9777 287468.5828 355368.4642 295610.3858 1.38120028 1.510273755 1.466240186 0.842709073 1.065012019 1.238115317 1.039631868 0.972457656 1.202151485 1 18.17333743 -5.241391982 24.88694231 1.058143717 1.458341718 0.738727674 0.10925333 391.6861517 486240.4429 0.029906481 0.051712408 5.74E-06 5.241391982 0.400198001 SS(ph)GSETEQVVDFSDR ddPTM_HeLa_A486_30min_R1 1 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 S(0.015)S(0.62)GS(0.365)ETEQVVDFSDR 229.92 4.39E-34 507590000 375780 345760 293430 153370 393960 346280 397140 391170 321360 395730 TRUE FALSE FALSE 349439.7625 318360.7184 407053.9543 357053.1109 344545.8633 303559.4943 297771.3715 302109.1302 349215.7435 296636.6322 1.178006101 1.073234671 1.372230905 1.203671671 1.161508141 1.023337853 1.003825351 1.01844849 1.177250904 1 18.17833724 -6.11783212 3.545696212 1.043346632 1.207218675 0.466164111 0.082892551 0.234516881 5.384124751 0.029261159 0.029614695 7.62E-07 6.11783212 0.163872044 SS(ph)GSPY(ph)GGGYGSGGGSGGYGSR ddPTM_HeLa_A486_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 0 S(0.197)S(0.803)GS(0.399)PY(0.597)GGGYGS(0.003)GGGSGGYGSR 270.73 3.70E-62 0 173080 194760 130500 72314 187870 170780 192290 202470 144270 200350 TRUE FALSE FALSE 160947.9858 179326.5083 181033.0949 168350.6465 164305.5928 149710.9 144177.0082 156372.0009 156775.4398 150181.0559 1.071692996 1.194068767 1.205432295 1.120984571 1.094050057 0.996869406 0.960021271 1.041223208 1.043909558 1 17.19634332 -5.971320863 2.210355105 1.008146949 1.158154104 0.717592013 0.041399027 0.167138477 1.649715428 0.015321535 0.017078775 1.07E-06 5.971320863 0.150007154 SS(ph)GSPYGGGY(ph)GSGGGSGGYGSR ddPTM_HeLa_A485_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 0 S(0.229)S(0.754)GS(0.043)PY(0.006)GGGY(0.862)GS(0.106)GGGSGGYGSR 384.06 1.03E-157 297580000 81783 103800 97092 112010 137570 100280 124970 128900 95312 140990 TRUE FALSE FALSE 99975.3462 115938.5071 133010.3711 118128.8227 123873.0478 105530.5057 98269.13859 97287.07289 114440.2441 105843.7877 0.944555636 1.095373754 1.256666773 1.116067605 1.170338387 0.997040148 0.928435581 0.919157137 1.081218337 1 16.69157707 -6.358481811 5.600754698 0.974284228 1.122832984 0.378430046 0.083772136 0.240166082 11.19963887 0.031001208 0.027242054 4.38E-07 6.358481811 0.148548756 SS(ph)HS(ph)MTSVKR ddPTM_HeLa_A485_30min_R1 1 SSHSMTSVKR 10 1 A0A590UJ18 A0A590UJ18 2 0 S(0.011)S(0.848)HS(0.461)MT(0.364)S(0.316)VKR 50.284 0.030213 53326000 35589 58771 54359 22320 69091 46083 55381 58227 47856 45695 TRUE FALSE FALSE 43505.65027 65643.75721 74468.65617 23539.28508 62212.05745 48495.83462 43548.39693 43946.73695 57460.26024 34304.07745 1.268235542 1.913584684 2.170839786 0.686194961 1.81354702 1.413704674 1.269481652 1.281093684 1.675027125 1 15.06609245 -10.61898251 0.075798836 9.59E-13 2.173652724 0.129668129 0.395658325 231.7592016 2.770892617 65.43039196 22.00861393 2.40E-11 10.61898251 2.173652724 SS(ph)KTFKEMLQDRES(ph)QNQK ddPTM_HeLa_A485_30min_R1 1 SSKTFKEMLQDRESQNQK 18 3 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;E9PJ10;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 2 0 S(0.457)S(0.504)KT(0.039)FKEMLQDRES(1)QNQK 45.546 0.028651 2790300000 752320 1156500 778250 218050 1711400 1553100 1585000 2721200 958540 381340 TRUE FALSE FALSE 919670.9885 1291742.615 1066157.061 229961.5194 1541007.007 1634417.914 1246351.802 2053821.433 1150910.186 286278.956 3.212499449 4.512181519 3.724189425 0.803277763 5.382886078 5.709179386 4.353627032 7.174196321 4.020240264 1 18.1270621 SS(ph)LAELMAR ddPTM_HeLa_A485_30min_R1 1 SSLAELMAR 9 0 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 0 S(0.465)S(0.535)LAELMAR 146.71 9.17E-05 22006000 35869 42217 34869 48995 54563 36582 54983 54083 38743 63388 TRUE FALSE FALSE 43847.9353 47153.91091 47768.49412 51671.47279 49130.51614 38497.37695 43235.43288 40819.05945 46518.36473 47586.53817 0.921435704 0.990908621 1.003823685 1.085842231 1.032445688 0.808997217 0.908564366 0.857785858 0.977553033 1 15.53826588 -6.234570195 24.91728307 0.901565713 1.010219028 0.359419306 0.063645218 728.7399259 675801.2316 0.021050187 0.021044496 5.83E-07 6.234570195 0.108653314 SS(ph)LETLEDIEENAPLR ddPTM_HeLa_A485_30min_R1 1 SSLETLEDIEENAPLR 16 0 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.183)S(0.817)LETLEDIEENAPLR 318.32 3.91E-102 0 24120 23505 25892 29434 32089 22488 35623 36769 31059 48142 TRUE FALSE FALSE 29485.41079 26253.70528 35470.52826 31041.90489 28894.10649 23665.43691 28011.85504 27751.3451 37292.25641 36141.08539 0.815841873 0.726422713 0.981446126 0.858909038 0.799480873 0.654807033 0.775069557 0.767861419 1.031852143 1 15.14135221 -7.763683796 24.99994149 1.015926191 0.797855032 0.53918799 0.080778 49.19533032 547911.6805 0.071724085 0.021961492 1.72E-08 7.763683796 -0.218071159 SS(ph)LETLEDIEENAPLR ddPTM_HeLa_A486_30min_R1 1 SSLETLEDIEENAPLR 16 0 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.143)S(0.857)LETLEDIEENAPLR 191.78 3.95E-18 27069000 36387 43166 34325 12901 35165 41092 49966 49133 41045 48123 TRUE FALSE FALSE 33836.4592 39745.36895 47616.55926 30034.17998 30754.2778 36022.48683 37463.97831 37946.48847 44602.81365 36072.68757 0.938007714 1.101813356 1.320016956 0.832601672 0.852564083 0.998608345 1.03856909 1.051945142 1.236470489 1 15.13861929 -9.47258771 11.04892822 0.999998567 1.038467917 0.006862235 0.145358644 0 0 0.147730735 0.035829966 3.37E-10 9.47258771 0.03846935 SS(ph)LETLEDIEENAPLRR ddPTM_HeLa_A485_30min_R1 3 SSLETLEDIEENAPLRR 17 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.015)S(0.985)LETLEDIEENAPLRR;S(0.095)S(0.905)LETLEDIEENAPLRR;S(0.039)S(0.961)LETLEDIEENAPLRR ;; 299.71 8.11E-69 483620000 83717 99229 85429 87954 127263 99218 132284 160858 106798 154147 TRUE FALSE FALSE 102339.5578 110832.9684 117032.7421 92758.70431 114592.2489 104412.9011 104020.4427 121407.3233 128231.379 115720.9898 0.884364695 0.957760287 1.011335475 0.801571992 0.990246014 0.902281438 0.898890019 1.049138307 1.108108211 1 16.82029104 -7.288445107 8.668780178 1.059345915 0.923174066 0.495516992 0.06065282 0.269825665 80.05315889 0.031666095 0.015472421 5.15E-08 7.288445107 -0.136171849 SS(ph)LETLEDIEENAPLRR ddPTM_HeLa_A486_30min_R1 4 SSLETLEDIEENAPLRR 17 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.023)S(0.977)LETLEDIEENAPLRR;S(0.002)S(0.998)LETLEDIEENAPLRR;S(0.014)S(0.986)LETLEDIEENAPLRR;S(0.022)S(0.978)LETLEDIEENAPLRR ;;; 350.88 1.69E-105 802120000 148533 163951 110880 53457 153316 153608 187904 199149 137906 180553 TRUE FALSE FALSE 138121.6037 150958.9257 153815.7055 124450.5976 134085.6777 134657.4067 140888.4318 153807.1201 149859.8031 135341.3536 1.020542503 1.11539394 1.1365019 0.919531202 0.990722156 0.994946505 1.040985833 1.136438465 1.107272826 1 17.0462432 -9.445734914 9.943126969 1.000005671 1.050633117 0.047993567 0.068567176 0 0 0.072481958 0.017579457 3.58E-10 9.445734914 0.050627447 SS(ph)LGSHQLPR ddPTM_HeLa_A485_30min_R1 2 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.261)S(0.739)LGSHQLPR;S(0.218)S(0.782)LGSHQLPR ; 168.98 2.33E-07 2788200000 828150 986240 1033150 794060 1540550 874730 1190810 1212450 1012940 1122590 TRUE FALSE FALSE 1012369.11 1101572.189 1415355.178 837437.4871 1387167.433 920529.5102 936383.7155 915094.7365 1216227.767 842748.9727 1.201270062 1.307117807 1.679450493 0.993697429 1.646003113 1.092293838 1.111106327 1.085844974 1.443167309 1 19.68474344 SS(ph)LGSHQLPR ddPTM_HeLa_A486_30min_R1 2 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.204)S(0.796)LGSHQLPR;S(0.182)S(0.818)LGSHQLPR ; 191.79 3.64E-10 2633900000 908530 1028360 864590 120994 1234060 993050 1033000 1102450 799220 751790 TRUE FALSE FALSE 844846.7387 946869.0084 1199382.403 281680.1467 1079272.688 870537.5876 774532.474 851446.2013 868497.0331 563536.8907 1.499186216 1.680225419 2.128312134 0.499843313 1.915176638 1.5447748 1.374413081 1.510897007 1.541153822 1 19.10415053 -12.00667797 0.257161926 1.01E-10 1.575905985 0.132323047 0.401749245 128.6559019 3.184055384 70.95179854 0.559885088 9.85E-13 12.00667797 1.575905985 SS(ph)LPRPSSILPPR ddPTM_HeLa_A486_30min_R1 1 SSLPRPSSILPPR 13 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4;H7BZB9 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.196)S(0.804)LPRPSSILPPR 94.569 0.00060729 154130000 72240 66852 60804 31661 93653 69879 84467 82601 61504 78595 TRUE FALSE FALSE 67176.34905 61554.40405 84348.93719 73708.40806 81906.16746 61258.03946 63332.4632 63794.55547 66835.21624 58914.30043 1.140238424 1.044812611 1.43172263 1.251112336 1.390259527 1.039782175 1.074993045 1.08283651 1.134448101 1 15.84633025 -6.285986746 24.84027117 1.072125549 1.250115801 0.422266996 0.108212749 799.3768502 808912.1871 0.040015231 0.035305532 5.18E-07 6.285986746 0.177990252 SS(ph)LS(ph)GDEEDELFK ddPTM_HeLa_A485_30min_R1 2 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 2 0 S(0.102)S(0.898)LS(1)GDEEDELFK;S(0.034)S(0.966)LS(1)GDEEDELFK ; 269.87 4.89E-42 927650000 970930 732050 479890 1836600 1041340 853720 1540270 1189530 631440 2221880 TRUE FALSE FALSE 1186910.029 817656.8795 657421.2809 1936928.807 937660.5332 898419.4591 1211178.732 897795.9024 758164.2161 1668006.207 0.711574108 0.490200142 0.394135992 1.161223981 0.562144511 0.538618775 0.726123636 0.538244941 0.45453321 1 20.66969323 -10.7046935 2.698773369 1.060301374 0.62179676 0.234665245 0.206035888 91064246.74 76934430.67 37309873.95 0.051977444 1.97E-11 10.7046935 -0.438504614 SS(ph)LS(ph)GDEEDELFK ddPTM_HeLa_A486_30min_R1 1 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 2 0 S(0.386)S(0.614)LS(1)GDEEDELFK 218.16 5.81E-27 858570000 1659700 1581300 578260 1150000 1218100 1863900 2585500 2183400 1149800 3265700 TRUE FALSE FALSE 1543363.601 1455992.029 802177.7583 2677258.118 1065314.54 1633950.969 1938580.553 1686287.483 1249465.59 2447947.464 0.630472518 0.59478075 0.327694025 1.093674663 0.435186848 0.667477956 0.791920816 0.68885771 0.510413564 1 21.22314117 -11.66807548 2.095692864 9.999630281 0.641794978 0.231892124 0.19762427 4331784.44 170671.3799 186723596.7 0.047716699 2.15E-12 11.66807548 -9.357835302 SS(ph)LS(ph)PGR ddPTM_HeLa_A485_30min_R1 3 SSLSPGR 7 0 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 S(0.354)S(0.647)LS(1)PGR;S(0.337)S(0.663)LS(1)PGR;S(0.378)S(0.622)LS(1)PGR ;; 111.46 0.0060041 1735890000 1786350 1587820 1894000 2722090 2934010 1684710 2374110 1937360 1995440 3515920 TRUE FALSE FALSE 2183717.395 1773501.737 2594669.416 2870790.884 2641889.662 1772918.811 1866862.004 1462219.422 2395906.505 2639465.85 0.827333074 0.67191691 0.98302822 1.087640851 1.000918297 0.67169606 0.707287804 0.553983081 0.907724002 1 21.33181457 -6.265778474 24.8890375 0.736458981 0.914172114 0.16425924 0.15675277 568.4230357 3260460.318 0.056626943 0.051674689 5.42E-07 6.265778474 0.177713132 SS(ph)LS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 SSLSPGR 7 0 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 2 0 S(0.325)S(0.675)LS(1)PGR;S(0.139)S(0.861)LS(1)PGR ; 142.56 0.0029706 4214300000 2853300 4183000 3257700 1809110 4923900 4321100 5041600 4866900 3854800 4094800 TRUE FALSE FALSE 2653298.404 3851523.846 4519168.684 4211699.507 4306298.548 3788006.616 3780138.355 3758813.114 4188937.168 3069435.427 0.864425549 1.254798785 1.472312675 1.372141427 1.402961115 1.234105328 1.231541906 1.224594295 1.36472562 1 21.54954189 -6.488951649 23.91781236 1.225201813 1.291811897 0.022626197 0.174825596 1734.589316 1222845.513 0.063634562 0.056080328 3.24E-07 6.488951649 0.066610084 SS(ph)LYFPR ddPTM_HeLa_A485_30min_R1 3 SSLYFPR 7 0 B8ZZW8;E7ENZ2;E9PG19;O94868-2;O94868 B8ZZW8 FCHSD2 F-BAR and double SH3 domains protein 2 1 0 S(0.312)S(0.688)LYFPR;S(0.159)S(0.841)LYFPR;S(0.266)S(0.734)LYFPR ;; 141.2 0.00055043 230519000 481360 488830 449500 468510 666880 439630 642600 600090 450530 598190 TRUE FALSE FALSE 588436.8713 545994.4162 615788.7553 494103.515 600483.0856 462648.347 505303.2604 452916.9866 540947.2385 449072.2419 1.310338998 1.215827578 1.371246534 1.100276234 1.337163667 1.03023145 1.125215975 1.008561528 1.204588456 1 18.77658802 -6.267044687 24.96458504 1.077473104 1.260661633 0.538750693 0.089276738 361.6940716 1610886.398 0.028912999 0.026175855 5.41E-07 6.267044687 0.183188529 SS(ph)LYFPR ddPTM_HeLa_A486_30min_R1 1 SSLYFPR 7 0 B8ZZW8;E7ENZ2;E9PG19;O94868-2;O94868 B8ZZW8 FCHSD2 F-BAR and double SH3 domains protein 2 1 0 S(0.262)S(0.738)LYFPR 87.696 0.0073437 149590000 244500 248310 169140 173090 228470 268610 344430 343770 197750 393950 TRUE FALSE FALSE 227361.8126 228633.0113 234635.5377 402962.2675 199813.1622 235471.6292 258249.971 265501.0754 214891.1292 295302.3558 0.769928882 0.774233618 0.794560331 1.364575187 0.676639242 0.797391638 0.874527297 0.899082145 0.727698662 1 18.17183334 SS(ph)LYGIAK ddPTM_HeLa_A486_30min_R1 2 SSLYGIAK 8 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.134)S(0.866)LYGIAK;S(0.256)S(0.744)LYGIAK ; 129.85 0.00055562 675250000 758750 806390 437990 312900 709060 843690 971220 1053040 610460 869390 TRUE FALSE FALSE 705565.5432 742488.7196 607591.4578 728447.0131 620123.0831 739604.1058 728210.4835 813285.7797 663375.1643 651689.0852 1.082672027 1.139329684 0.932333334 1.11778305 0.951562788 1.134903319 1.117420101 1.247965937 1.017931985 1 19.31382431 SS(ph)MEMEGIFNHK ddPTM_HeLa_A485_30min_R1 4 SSMEMEGIFNHK 12 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 S(0.259)S(0.741)MEMEGIFNHK;S(0.125)S(0.875)MEMEGIFNHK;S(0.113)S(0.887)MEMEGIFNHK;S(0.343)S(0.657)MEMEGIFNHK ;;; 332.36 2.60E-73 3943180000 1628920 1348150 1135040 1915920 1821350 1249490 1958620 1512370 1334930 2436150 TRUE FALSE FALSE 1991267.634 1505804.415 1554938.529 2020581.858 1640009.999 1314911.364 1540144.837 1141458.886 1602838.206 1828862.639 1.08880109 0.823355665 0.850221605 1.104829753 0.896737658 0.718977651 0.842132593 0.624135931 0.87641257 1 20.80251529 -6.010520397 24.11376036 0.79260887 0.954798057 0.246607458 0.124487384 422.873684 969270.1816 0.038655868 0.041181068 9.76E-07 6.010520397 0.162189188 SS(ph)MEMEGIFNHK ddPTM_HeLa_A486_30min_R1 4 SSMEMEGIFNHK 12 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2 E7EPJ7 TRIO Triple functional domain protein 1 0 S(0.206)S(0.794)MEMEGIFNHK;S(0.013)S(0.987)MEMEGIFNHK;S(0.183)S(0.817)MEMEGIFNHK;S(0.228)S(0.772)MEMEGIFNHK ;;; 318.74 6.32E-61 5724970000 2748560 2956210 1878400 1197640 2878110 3161790 3742130 3557960 2592000 3100420 TRUE FALSE FALSE 2555900.138 2721949.153 2605766.785 2788166.445 2517110.606 2771720.497 2805809.494 2747890.178 2816676.647 2324054.652 1.099759051 1.171207033 1.121215796 1.199699174 1.083068595 1.19262277 1.207290668 1.182369001 1.211966614 1 21.14821256 SS(ph)PAAKPGS(ph)TPSRPSSAK ddPTM_HeLa_A485_30min_R1 3 SSPAAKPGSTPSRPSSAK 18 2 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 2 0 S(0.477)S(0.523)PAAKPGS(0.512)T(0.467)PS(0.018)RPS(0.002)S(0.002)AK;S(0.447)S(0.553)PAAKPGS(0.549)T(0.444)PS(0.007)RPSSAK;S(0.453)S(0.547)PAAKPGS(0.535)T(0.307)PS(0.156)RPS(0.001)SAK ;; 122.18 1.26E-05 459110000 829382 593260 463770 1131360 1021090 737590 1098220 959000 654050 1586100 TRUE FALSE FALSE 1013875.165 662636.5963 635337.8221 1193163.332 919426.6943 776209.0719 863576.3254 723803.7463 785311.8357 1190714.46 0.851484717 0.556503359 0.533576977 1.002056641 0.772163877 0.651885148 0.725258955 0.607873483 0.659529939 1 20.18339606 -10.61931678 2.635655017 1.029368279 0.703832872 0.300052825 0.134323962 26955370.26 24210626.3 5430901.55 0.036283326 2.40E-11 10.61931678 -0.325535407 SS(ph)PAAKPGS(ph)TPSRPSSAK ddPTM_HeLa_A486_30min_R1 1 SSPAAKPGSTPSRPSSAK 18 2 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 2 0 S(0.455)S(0.545)PAAKPGS(0.848)T(0.145)PS(0.007)RPSSAK 82.267 0.0083167 190670000 261550 241890 96094 134810 224140 316850 360940 337410 184690 349510 TRUE FALSE FALSE 243216.6956 222721.7555 133304.1703 313844.4929 196026.2712 277760.2685 270628.9944 260589.1086 200699.0779 261990.4211 0.92834194 0.850114117 0.508813146 1.197923541 0.74821923 1.060192458 1.032972859 0.994651284 0.766055022 1 17.99915454 -5.267248505 24.994976 0.968169947 0.771192176 0.263039329 0.160051549 659.937702 2839521.721 0.043689224 0.066808963 5.40E-06 5.267248505 -0.196977771 SS(ph)PAAKPGST(ph)PSRPSSAK ddPTM_HeLa_A486_30min_R1 1 SSPAAKPGSTPSRPSSAK 18 2 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 2 0 S(0.092)S(0.908)PAAKPGS(0.439)T(0.557)PS(0.004)RPSSAK 195.24 8.84E-19 284850000 377230 372820 138830 184910 315410 486850 558980 509840 299210 568760 TRUE FALSE FALSE 350788.125 343276.3854 192588.694 430479.8248 275848.3367 426787.3969 419117.2917 393760.5617 325145.7637 426338.794 0.822791944 0.805172765 0.451726882 1.009713005 0.64701674 1.001052222 0.983061588 0.923586048 0.762646441 1 18.70164081 -6.267758517 24.92185701 0.932355409 0.748659814 0.287514407 0.146997534 672.5853747 2652582.325 0.050236348 0.045387524 5.40E-07 6.267758517 -0.183695596 SS(ph)PAAKPGSTPSRPS(ph)SAKR ddPTM_HeLa_A486_30min_R1 1 SSPAAKPGSTPSRPSSAKR 19 3 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 2 0 S(0.155)S(0.845)PAAKPGS(0.184)T(0.162)PS(0.099)RPS(0.295)S(0.261)AKR 69.435 0.0033939 108770000 81398 74742 29186 43969 66772 95396 109680 102930 63673 127850 TRUE FALSE FALSE 75692.42054 68819.17171 40487.60083 102362.0541 58396.83314 83627.01144 82236.90392 79495.08595 69192.22691 95835.52784 0.789815867 0.718096652 0.422469639 1.068101323 0.609344305 0.872609703 0.858104565 0.829494946 0.721989313 1 16.54827297 -5.260630489 24.99994663 0.835353577 0.650924331 0.284704291 0.149380765 103.0052315 3183482.202 0.039716013 0.063929797 5.49E-06 5.260630489 -0.184429246 SS(ph)PAAKPGSTPSRPSSAK ddPTM_HeLa_A486_30min_R1 2 SSPAAKPGSTPSRPSSAK 18 2 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 1 0 S(0.055)S(0.945)PAAKPGSTPSRPSSAK;S(0.032)S(0.968)PAAKPGSTPSRPSSAK ; 128.01 4.58E-06 865950000 1011610 985520 469880 486620 882960 1216610 1337740 1340170 912470 1466620 TRUE FALSE FALSE 940701.363 907423.806 651830.1198 1132875.952 772210.9235 1066517.028 1003023.303 1035042.547 991563.6343 1099368.806 0.855674054 0.82540436 0.592913057 1.030478531 0.702412984 0.9701176 0.912362892 0.941488008 0.90193903 1 20.06824402 -6.232495241 1.084522534 0.94696195 0.791390124 0.251464527 0.111990188 0.721820187 1.776365561 0.057685041 0.053569457 5.85E-07 6.232495241 -0.155571825 SS(ph)PAFGDRR ddPTM_HeLa_A486_30min_R1 2 SSPAFGDRR 9 1 P13716;P13716-2 P13716 ALAD Delta-aminolevulinic acid dehydratase 1 0 S(0.353)S(0.647)PAFGDRR;S(0.495)S(0.505)PAFGDRR ; 206.36 3.23E-10 560890000 270850 298620 221492 83313 327930 263530 308220 306270 251420 320810 TRUE FALSE FALSE 251864.8137 274956.2636 307259.6342 193956.8744 286797.9616 231018.348 231100.096 236539.0068 273213.288 240477.0879 1.047354723 1.143378216 1.277708562 0.806550329 1.192620736 0.960666773 0.961006714 0.983623882 1.136130225 1 17.87553992 -5.240083564 24.99973797 1.009154725 1.154870245 0.278079302 0.110913024 1087.636475 1273217.188 0.028937661 0.050056952 5.75E-06 5.240083564 0.14571552 SS(ph)PAFTK ddPTM_HeLa_A485_30min_R1 2 SSPAFTK 7 0 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.116)S(0.884)PAFTK;S(0.077)S(0.923)PAFTK ; 83.265 0.0086294 0 691620 626990 558880 926240 868440 695020 978370 932080 648930 1215300 TRUE FALSE FALSE 845468.4829 700311.0264 765632.9689 976838.1458 781975.0643 731410.1725 769333.257 703485.9186 779164.2987 912348.0759 0.926695091 0.767591937 0.839189547 1.070685818 0.857101675 0.801678868 0.843245333 0.77107185 0.854020871 1 19.79922482 -5.987383522 24.99970151 0.837952659 0.896690979 0.043956054 0.091368375 642.412312 1272940.351 0.028800951 0.032638858 1.03E-06 5.987383522 0.05873832 SS(ph)PAFTK ddPTM_HeLa_A486_30min_R1 1 SSPAFTK 7 0 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.146)S(0.854)PAFTK 73.985 0.017789 240660000 265700 299380 184210 120930 297880 327870 345720 360950 258390 357560 TRUE FALSE FALSE 247075.8021 275656.0385 255541.0453 281531.1515 260517.1128 287420.7329 259217.1993 278769.5645 280787.4532 268024.6487 0.921839851 1.028472716 0.953423674 1.050392764 0.971989383 1.072366793 0.967139405 1.040089282 1.047618026 1 18.03200616 -2.951447349 0.980158426 1.018201334 8.94E-35 0.322402491 0.038889603 25.64075866 2.523577282 0.011531991 48.59611827 0.001118285 2.951447349 -1.018201334 SS(ph)PAFTKR ddPTM_HeLa_A485_30min_R1 2 SSPAFTKR 8 1 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.12)S(0.88)PAFTKR;S(0.016)S(0.984)PAFTKR ; 152.04 0.00011705 451710000 194998 202918 145080 233310 249100 223770 298740 354360 162063 243580 TRUE FALSE FALSE 238374.6324 226647.4949 198751.1293 246055.1345 224298.7294 235486.2512 234911.7585 267452.6544 194587.5576 182859.9888 1.303590982 1.239459198 1.086903322 1.345593075 1.226614586 1.287795394 1.284653686 1.46260894 1.064134144 1 17.48037991 -7.942644387 8.965130939 1.000104556 1.272571979 0.553356948 0.08971361 0.19087166 26.76705175 0.087199307 0.022537206 1.14E-08 7.942644387 0.272467423 SS(ph)PAFTKR ddPTM_HeLa_A486_30min_R1 1 SSPAFTKR 8 1 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.205)S(0.795)PAFTKR 107.55 0.0011282 0 53168 54856 40759 22330 61907 55715 60249 68179 43040 71312 TRUE FALSE FALSE 49441.19776 50509.01078 56541.97636 51985.3685 54142.0468 48841.44977 45174.06295 52656.13004 46770.74185 53455.01104 0.92491231 0.94488823 1.057748848 0.972506927 1.012852598 0.913692633 0.845085654 0.985055077 0.874955237 1 15.70603758 -6.27555833 23.94022598 0.91790665 0.98410393 0.221049963 0.054625799 648.5223897 1099636.224 0.018909477 0.016766525 5.30E-07 6.27555833 0.06619728 SS(ph)PASS(ph)PELPWRPR ddPTM_HeLa_A485_30min_R1 2 SSPASSPELPWRPR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 S(0.399)S(0.601)PAS(0.342)S(0.658)PELPWRPR;S(0.435)S(0.565)PAS(0.014)S(0.986)PELPWRPR ; 134.85 1.31E-05 152308000 78136 95433 89705 96995 115128 88958 122399 132136 87712 117313 TRUE FALSE FALSE 95517.08363 106593.0592 122890.6124 102293.5912 103665.4521 93615.70332 96247.45374 99729.43882 105314.9939 88069.02809 1.084570657 1.210335364 1.395389675 1.161516068 1.177093177 1.062980998 1.092863812 1.132400811 1.195823278 1 16.42634712 -5.851890606 2.40574117 1.106497024 1.229647925 0.281274896 0.086760988 0.39463042 4.663420315 0.030087935 0.036081499 1.41E-06 5.851890606 0.123150901 SS(ph)PASS(ph)PELPWRPR ddPTM_HeLa_A486_30min_R1 1 SSPASSPELPWRPR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 S(0.365)S(0.635)PAS(0.128)S(0.872)PELPWRPR 145.55 9.36E-08 77104000 35257 40752 35256 16843 56055 46002 46709 44954 33561 46128 TRUE FALSE FALSE 32785.66637 37522.6631 48908.06739 39211.3552 49024.05921 40326.74095 35021.91416 34718.95554 36470.0945 34577.24856 0.948186097 1.085183601 1.414458045 1.134021845 1.417812615 1.166279639 1.012860063 1.004098272 1.054742526 1 15.07753545 -6.698765764 4.803453276 1.017770957 1.209462375 0.296372825 0.133132244 0.265707363 12.06587768 0.054987718 0.041191321 2.00E-07 6.698765764 0.191691418 SS(ph)PCMVR ddPTM_HeLa_A485_30min_R1 1 SSPCMVR 7 0 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 S(0.337)S(0.663)PCMVR 136.8 0.001575 343680000 238040 251280 204160 238270 234510 197770 258730 243170 201680 289630 TRUE FALSE FALSE 290991.1768 280665.0102 279687.2798 251286.0868 211161.361 208124.9314 203450.2219 183532.1762 242155.3261 217430.5712 1.338317676 1.290825888 1.28632914 1.155707246 0.971166841 0.957201787 0.935702007 0.844095544 1.113713332 1 17.73019528 -5.546542867 1.988771316 0.955644095 1.311073935 0.845591559 0.064513743 0.114104317 0.909564638 0.020422491 0.031392886 2.84E-06 5.546542867 0.35542984 SS(ph)PCMVR ddPTM_HeLa_A486_30min_R1 1 SSPCMVR 7 0 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 S(0.082)S(0.918)PCMVR 157.68 0.00043087 292860000 234010 279930 184020 70587 214380 233200 221660 201680 204110 250190 TRUE FALSE FALSE 217607.1074 257747.3273 255277.4722 164330.1033 187490.4614 204430.155 166198.3235 155761.8666 221802.4191 187540.7955 1.160318782 1.374353386 1.361183691 0.876236569 0.99973161 1.09005699 0.886198243 0.830549248 1.18268891 1 17.51684493 -5.256802115 24.98008964 0.975121698 1.306192113 0.628700694 0.111827894 238.9446707 1287146.552 0.030402131 0.050505753 5.54E-06 5.256802115 0.331070415 SS(ph)PELTR ddPTM_HeLa_A485_30min_R1 5 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.338)S(0.662)PELTR;S(0.203)S(0.797)PELTR;S(0.332)S(0.668)PELTR;S(0.18)S(0.82)PELTR;S(0.174)S(0.826)PELTR ;;;; 230.54 2.74E-07 2735760000 1722540 2006770 2052850 2000880 2600140 1929180 2341150 2286010 1983970 2667370 TRUE FALSE FALSE 2105713.08 2241444.295 2812284.641 2110183.008 2341260.932 2030188.882 1840944.177 1725362.463 2382134.581 2002443.748 1.051571652 1.119354437 1.404426288 1.053803888 1.169201848 1.013855637 0.91934876 0.86162843 1.189613732 1 20.93333029 -6.315760505 3.729974576 0.979282966 1.166476909 0.307676573 0.121294852 0.280669403 8.007310403 0.044573592 0.039892329 4.83E-07 6.315760505 0.187193944 SS(ph)PELTR ddPTM_HeLa_A486_30min_R1 4 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.283)S(0.717)PELTR;S(0.243)S(0.757)PELTR;S(0.322)S(0.678)PELTR;S(0.094)S(0.906)PELTR ;;; 194.29 0.00029465 2956550000 1737800 2053980 1437120 636704 1927000 1929910 2087220 2037700 1622250 2068520 TRUE FALSE FALSE 1615989.194 1891215.144 1993611.351 1482279.089 1685297.691 1691817.326 1564975.48 1573760.193 1762867.936 1550549.128 1.042204445 1.21970669 1.285745363 0.955970412 1.086903769 1.091108495 1.009304027 1.014969577 1.136931365 1 20.56434781 -5.263939015 24.99615374 1.045327035 1.186267616 0.423251465 0.074995003 210.998391 2109970.817 0.020761955 0.032490133 5.45E-06 5.263939015 0.140940581 SS(ph)PELTRK ddPTM_HeLa_A485_30min_R1 3 SSPELTRK 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.162)S(0.838)PELTRK;S(0.185)S(0.815)PELTRK;S(0.493)S(0.507)PELTRK ;; 112.83 0.00064514 2390950000 875810 1179260 840020 934070 1441470 1399540 1787790 2073250 984360 1340660 TRUE FALSE FALSE 1070630.913 1317164.199 1150778.354 985095.8789 1297952.185 1472817.75 1405814.062 1564782.187 1181912.023 1006458.135 1.063761001 1.308712358 1.14339416 0.978774819 1.289623622 1.463367128 1.396793381 1.554741457 1.174328054 1 19.94085573 -5.985545876 23.28915795 1.359567548 1.137776839 0.220193099 0.165488959 133.622159 215295.0577 0.049511109 0.056107092 1.03E-06 5.985545876 -0.221790708 SS(ph)PELTRK ddPTM_HeLa_A486_30min_R1 1 SSPELTRK 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.171)S(0.829)PELTRK 87.568 0.0025694 1537800000 409780 382690 230950 193590 480590 347200 535690 478410 287650 579820 TRUE FALSE FALSE 381056.5381 352364.2507 320380.0251 450687.3035 420309.9209 304365.9941 401654.696 369486.4866 312583.7336 434629.298 0.876739189 0.81072365 0.737133982 1.03694644 0.967053815 0.700288718 0.924131663 0.850118683 0.719196186 1 18.7294259 SS(ph)PEQPIGQGR ddPTM_HeLa_A485_30min_R1 1 SSPEQPIGQGR 11 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 S(0.297)S(0.703)PEQPIGQGR 179.43 2.14E-10 1589400000 1088500 1847200 1762200 1132000 2164100 1407600 1607500 2011400 1567700 1695000 TRUE FALSE FALSE 1330633.07 2063213.971 2414111.111 1193838.294 1948634.605 1481299.759 1264044.493 1518100.996 1882323.01 1272467.694 1.045710689 1.621427389 1.897188528 0.938207154 1.53138238 1.164115809 0.99338042 1.193036965 1.479269783 1 20.2791976 -5.272795626 24.97115492 1.199170559 1.531440744 0.246773842 0.267957082 1009.709356 2220238.765 0.075271655 0.112763401 5.34E-06 5.272795626 0.332270184 SS(ph)PEQPIGQGR ddPTM_HeLa_A486_30min_R1 1 SSPEQPIGQGR 11 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 S(0.13)S(0.87)PEQPIGQGR 91.313 0.002614 1792200000 1079700 1163000 1015700 336770 1274000 975120 1204400 1304300 1174000 1217600 TRUE FALSE FALSE 1004018.606 1070839.644 1409006.241 784017.5794 1114203.04 854819.6087 903046.3812 1007339.363 1275763.265 912705.0348 1.100047186 1.173259272 1.543769551 0.859004333 1.220770126 0.936578167 0.989417552 1.103685555 1.397782653 1 19.79978916 -5.274242621 24.98544172 1.07384029 1.262448758 0.207936814 0.17845538 1253.397409 2445994.26 0.050168525 0.074953305 5.32E-06 5.274242621 0.188608468 SS(ph)PEQPRPSTSK ddPTM_HeLa_A485_30min_R1 4 SSPEQPRPSTSK 12 1 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.324)S(0.676)PEQPRPSTSK;S(0.136)S(0.864)PEQPRPSTSK;S(0.215)S(0.785)PEQPRPSTSK;S(0.188)S(0.81)PEQPRPS(0.002)TSK ;;; 157.56 4.25E-07 52209890000 11438620 11950050 9788510 14239030 14916550 13592500 19356960 19034870 10760540 18853070 TRUE FALSE FALSE 13983101.56 13347504.4 13409687.18 15016872.15 13431405.91 14304182.28 15221187.36 14366538.29 12920081.68 14153346.61 0.987971392 0.943063486 0.94745699 1.06101211 0.948991519 1.010657244 1.075447933 1.015062987 0.912864076 1 23.75463989 -5.192361488 24.9998185 1.00509519 0.957853828 0.160115024 0.04595715 305.7108051 110637.3771 0.012611874 0.021844406 6.42E-06 5.192361488 -0.047241362 SS(ph)PEQPRPSTSK ddPTM_HeLa_A486_30min_R1 2 SSPEQPRPSTSK 12 1 H3BT57;H3BUJ5;H3BRN3;P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 H3BT57;P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.018)S(0.982)PEQPRPSTSK;S(0.171)S(0.828)PEQPRPSTSK ; 168.67 8.46E-11 4771570000 4786560 4259430 2586060 1966320 4666130 5027460 6025250 5598730 3803540 6093290 TRUE FALSE FALSE 4451046.862 3921897.254 3587451.689 4577692.332 4080860.465 4407223.101 4517668.721 4324021.398 4133233.91 4567490.523 0.974505987 0.858654711 0.785431666 1.00223357 0.893457894 0.964911274 0.989092084 0.94669521 0.904924463 1 22.1229703 -5.278652597 24.97758621 0.954087496 0.871443167 0.33115832 0.054863059 924.3254745 1341259.354 0.015438266 0.022957616 5.26E-06 5.278652597 -0.08264433 SS(ph)PFKVS(ph)PLTFGR ddPTM_HeLa_A485_30min_R1 1 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 2 0 S(0.44)S(0.56)PFKVS(0.998)PLT(0.002)FGR 122.31 5.36E-05 70469000 150960 104080 72081 270310 173430 104120 183370 149840 117490 334100 TRUE FALSE FALSE 184540.5312 116251.2506 98746.76144 285076.3508 156162.7003 109571.5622 144191.5015 113091.5051 141069.1653 250815.0187 0.735763481 0.463493978 0.393703543 1.136600003 0.62262101 0.436862046 0.574891816 0.450896065 0.562443055 1 17.93626421 -10.48270534 11.21008852 1.000000644 0.594438043 0.258072255 0.204691882 3.40E-06 1.57E-07 0.204130054 0.049508731 3.29E-11 10.48270534 -0.405562602 SS(ph)PFKVS(ph)PLTFGR ddPTM_HeLa_A486_30min_R1 2 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 2 0 S(0.386)S(0.614)PFKVS(0.995)PLT(0.005)FGR;S(0.444)S(0.556)PFKVS(0.999)PLT(0.001)FGR ; 132.87 1.79E-05 158613000 278430 306590 137113 219770 250640 386190 482990 432220 229610 471040 TRUE FALSE FALSE 258913.4948 282294.6918 190206.8256 511635.6666 219202.3941 338545.8043 362140.7935 333812.9413 249512.7797 353088.518 0.733282114 0.799501194 0.538694452 1.449029465 0.62081428 0.958812839 1.025637411 0.945408656 0.706657869 1 18.42967038 SS(ph)PGAGPSDHHSASR ddPTM_HeLa_A485_30min_R1 2 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 S(0.032)S(0.968)PGAGPSDHHSASR;S(0.035)S(0.965)PGAGPSDHHSASR ; 269.09 2.75E-51 3973400000 345140 922610 1097950 112813 1150940 495730 581050 606440 641280 231380 TRUE FALSE FALSE 421915.2023 1030501.214 1504127.395 118975.6885 1036348.372 521685.6563 456903.9208 457709.6391 769979.0138 173701.2242 2.428970804 5.932607662 8.65927918 0.684944444 5.966269823 3.003350486 2.63040127 2.6350398 4.432778279 1 17.4062484 -6.015693798 0.965002518 2.734029986 5.211847577 0.160521008 2.168150453 1.025949162 2.069309512 1.135022274 1.338972375 9.65E-07 6.015693798 2.477817591 SS(ph)PGAGPSDHHSASR ddPTM_HeLa_A486_30min_R1 1 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7;Q9Y2K7-3;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7-5 I3VM54;Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 0 S(0.027)S(0.973)PGAGPSDHHSASR 273.77 2.63E-58 1577600000 293580 384790 525790 13064 530790 161570 204670 195380 424170 59457 TRUE FALSE FALSE 273001.558 354297.839 729389.9691 30413.65222 464213.3688 141637.1361 153459.4012 150896.2391 460937.3971 44568.5802 6.125426406 7.949497997 16.36556439 0.682401191 10.41570915 3.177959349 3.443219428 3.385708911 10.34220509 1 15.44373938 -5.27808988 24.99869695 4.865175546 9.927097544 0.283252126 4.001455194 1085.689488 1630028.038 1.098608249 1.634540122 5.27E-06 5.27808988 5.061921998 SS(ph)PGAVAGLSNAPGTPR ddPTM_HeLa_A485_30min_R1 4 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 S(0.266)S(0.734)PGAVAGLSNAPGTPR;S(0.166)S(0.834)PGAVAGLSNAPGTPR;S(0.045)S(0.955)PGAVAGLSNAPGTPR;S(0.134)S(0.866)PGAVAGLSNAPGTPR ;;; 273.52 2.44E-59 1185740000 504693 521883 492469 733740 624700 481020 679180 681620 453370 1134950 TRUE FALSE FALSE 616960.2167 582912.6771 674653.7764 773822.3583 562502.6745 506205.4634 534067.6446 514451.6263 544357.2004 852027.8522 0.724108038 0.684147444 0.791821271 0.908212515 0.660192825 0.594118446 0.626819467 0.603796724 0.638896016 1 19.70054107 -4.006330664 15.65288168 0.70933022 0.73582102 0 0.130413416 11165463.83 377294653.4 0.033053401 4789389.749 9.86E-05 4.006330664 0.0264908 SS(ph)PGAVAGLSNAPGTPR ddPTM_HeLa_A486_30min_R1 2 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 S(0.178)S(0.822)PGAVAGLSNAPGTPR;S(0.008)S(0.992)PGAVAGLSNAPGTPR ; 262.83 1.09E-51 805740000 315243 372140 281583 150834 327050 319918 416370 394510 266109 378640 TRUE FALSE FALSE 293146.0936 342650.2711 390619.4787 351149.1747 286028.3394 280449.7698 312189.8221 304688.6851 289175.5424 283826.0795 1.032837061 1.207254357 1.376263518 1.237198412 1.007759188 0.988104301 1.099933532 1.073504893 1.018847679 1 18.11464763 -5.758493398 24.99877567 1.036299565 1.224584168 0.528297842 0.08392027 64.14230301 544289.2929 0.026794651 0.033093371 1.74E-06 5.758493398 0.188284603 SS(ph)PGGQDEGGFMAQGK ddPTM_HeLa_A485_30min_R1 6 SSPGGQDEGGFMAQGK 16 0 A0A1B0GTU4;F5GZ78;P49023;A0A1B0GV30 A0A1B0GTU4 PXN Paxillin 1 0 S(0.23)S(0.77)PGGQDEGGFMAQGK;S(0.008)S(0.992)PGGQDEGGFMAQGK;S(0.005)S(0.995)PGGQDEGGFMAQGK;S(0.08)S(0.92)PGGQDEGGFMAQGK;S(0.022)S(0.978)PGGQDEGGFMAQGK;S(0.226)S(0.774)PGGQDEGGFMAQGK ;;;;; 420.55 1.55E-171 3098260000 2511380 2188420 1722050 3001580 3067550 2265700 3444230 2942410 2165250 4007200 TRUE FALSE FALSE 3070027.817 2444336.682 2359107.955 3165548.715 2762133.951 2384328.549 2708342.124 2220779.334 2599795.814 3008278.787 1.020526365 0.812536622 0.784205229 1.05227904 0.918177518 0.792588958 0.900296254 0.738222582 0.864213724 1 21.52050684 -6.230320337 23.99449069 0.845280201 0.911788639 0.069657498 0.09964533 1069.491504 824636.1516 0.032766897 0.032762523 5.88E-07 6.230320337 0.066508438 SS(ph)PGGQDEGGFMAQGK ddPTM_HeLa_A486_30min_R1 5 SSPGGQDEGGFMAQGK 16 0 A0A1B0GTU4;F5GZ78;P49023;A0A1B0GV30 A0A1B0GTU4 PXN Paxillin 1 0 S(0.04)S(0.96)PGGQDEGGFMAQGK;S(0.133)S(0.867)PGGQDEGGFMAQGK;S(0.002)S(0.998)PGGQDEGGFMAQGK;S(0.404)S(0.596)PGGQDEGGFMAQGK;S(0.183)S(0.817)PGGQDEGGFMAQGK ;;;; 455.65 3.61E-194 3062540000 2919170 3213610 1829190 1166310 2937160 3377290 3993610 3749600 2514760 3559620 TRUE FALSE FALSE 2714551.258 2958951.84 2537501.355 2715228.622 2568754.005 2960634.298 2994366.538 2895897.933 2732741.422 2668267.983 1.017345812 1.108941028 0.950991944 1.017599671 0.962704654 1.109571571 1.12221357 1.085310003 1.02416303 1 21.34747214 -6.271996202 24.99251037 1.07695613 1.013904553 0.21723844 0.052467137 1042.564253 2468189.048 0.018626771 0.016608824 5.35E-07 6.271996202 -0.063051577 SS(ph)PGNKDKEAPCSR ddPTM_HeLa_A486_30min_R1 1 SSPGNKDKEAPCSR 14 2 O15231-4;O15231-7;O15231;O15231-8;O15231-6;H7BZT5;O15231-5;H7C1R1;O15231-3;H0Y704 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 S(0.196)S(0.804)PGNKDKEAPCSR 58.98 0.014375 91539000 203230 171470 130430 134790 290530 206960 334930 345520 157380 275820 TRUE FALSE FALSE 188984.6265 157882.0927 180935.989 313797.9319 254089.0183 181427.3794 251126.9715 266852.6386 171021.8251 206752.8767 0.914060445 0.763627066 0.875131664 1.51774397 1.228950341 0.877508368 1.214623832 1.290684042 0.827179906 1 17.65754788 -5.033149729 24.83155569 1.149027481 0.833977477 0.311971338 0.194316525 624.6374261 467898.5234 0.052828297 0.091588605 9.27E-06 5.033149729 -0.315050003 SS(ph)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_HeLa_A485_30min_R1 3 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 36 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 S(0.029)S(0.971)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR;S(0.031)S(0.969)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR;S(0.237)S(0.763)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ;; 286.41 1.25E-79 4151190000 34841.4 21402 24654 31288.8 36678 32260.5 38823.5 10064 29973.6 40588 TRUE FALSE FALSE 42591.74923 23904.77773 33774.54054 32998.02792 33026.20954 33949.6099 30528.54207 7595.78822 35989.02659 30470.15857 1.397818431 0.784530795 1.108446497 1.082962133 1.083887026 1.114192098 1.001916088 0.24928614 1.181123705 1 14.89510939 -7.020380393 24.92490256 0.754243172 1.078810279 0.180570969 0.262325145 1025.624459 1254318.337 0.11255169 0.066014466 9.54E-08 7.020380393 0.324567107 SS(ph)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_HeLa_A486_30min_R1 3 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 36 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 S(0.169)S(0.831)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR;S(0.028)S(0.972)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR;S(0.036)S(0.964)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ;; 387.9 4.15E-195 6731900000 54078.5 42794.3 76767 36881 87723 16042 50368 62937 4364.4 106805.5 TRUE FALSE FALSE 50287.87641 39403.12381 106493.2383 85860.83186 76719.96336 14062.90114 37765.39366 48607.61901 4742.709706 80060.70761 0.628121808 0.49216557 1.330156096 1.072446577 0.958272362 0.175652971 0.471709466 0.607134516 0.059238918 1 16.28880675 -6.244088607 24.46397832 0.438753222 0.907680902 0.314404918 0.318855461 744.3679198 1049532.711 0.106624318 0.106364275 5.70E-07 6.244088607 0.468927681 SS(ph)PGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_A485_30min_R1 3 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 S(0.028)S(0.972)PGQTPEEGAQALAEFAALHGPALR;S(0.135)S(0.865)PGQTPEEGAQALAEFAALHGPALR;S(0.117)S(0.883)PGQTPEEGAQALAEFAALHGPALR ;; 340 4.74E-124 41179000000 1161310 1595770 1360910 1252620 1796620 1389910 1835870 1776500 1350730 1788370 TRUE FALSE FALSE 1419639.403 1782381.42 1864367.241 1321047.459 1617742.204 1462683.538 1443621.377 1340810.59 1621809.121 1342562.272 1.05741047 1.327596833 1.388663514 0.983974812 1.204966234 1.089471654 1.075273309 0.998695269 1.207995455 1 20.35655758 -5.265795434 24.99577313 1.085397363 1.264860927 0.361208382 0.108093103 390.553621 2241063.151 0.02955424 0.04565175 5.42E-06 5.265795434 0.179463565 SS(ph)PGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_A486_30min_R1 2 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 S(0.178)S(0.822)PGQTPEEGAQALAEFAALHGPALR;S(0.418)S(0.582)PGQTPEEGAQALAEFAALHGPALR ; 333.07 1.13E-123 21449700000 3244430 3379260 2503530 1161870 3592730 2956770 3775760 3706330 2712660 3686950 TRUE FALSE FALSE 3017012.211 3111475.131 3472963.863 2704892.078 3142096.303 2591993.78 2831024.912 2862479.568 2947795.553 2763713.722 1.091651493 1.125831198 1.256629381 0.978716448 1.136910917 0.937866234 1.024355341 1.035736641 1.066606693 1 21.39817675 -5.276776593 24.91170719 1.028143581 1.154816751 0.478604572 0.063216049 658.4097936 1069430.358 0.017474467 0.026027049 5.29E-06 5.276776593 0.12667317 SS(ph)PGSVAASPSGGGGR ddPTM_HeLa_A485_30min_R1 1 SSPGSVAASPSGGGGR 16 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 S(0.001)S(0.999)PGSVAASPSGGGGR 168.1 4.66E-12 574040000 447290 439740 382010 499010 505700 395520 551570 518990 373220 745800 TRUE FALSE FALSE 546788.1174 491163.7678 523331.3958 526269.6527 455350.7324 416228.8156 433722.5636 391706.8888 448121.8306 559885.7854 0.976606536 0.877257077 0.934710988 0.939958946 0.813292182 0.743417366 0.774662574 0.699619278 0.800380796 1 19.09477303 -5.839424118 4.460975531 0.782790545 0.928612855 0.371759041 0.078321316 0.194181654 7.203642028 0.023272121 0.02703945 1.45E-06 5.839424118 0.145822311 SS(ph)PGSVAASPSGGGGR ddPTM_HeLa_A486_30min_R1 2 SSPGSVAASPSGGGGR 16 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 S(0.062)S(0.938)PGSVAASPSGGGGR;S(0.001)S(0.999)PGSVAASPSGGGGR ; 233.43 3.50E-35 984550000 868770 879170 661250 310620 846170 834100 979750 880570 725340 1035370 TRUE FALSE FALSE 807873.7093 809501.3673 917303.7089 723139.0579 740035.4684 731197.2225 734606.1873 680083.4337 788213.0552 776106.6129 1.040931357 1.043028566 1.181930026 0.931752218 0.953522952 0.942135024 0.946527417 0.876275788 1.015598942 1 19.56589532 -5.285816731 24.92988233 0.946495748 1.084069849 0.598728351 0.050967153 462.0076479 472478.3489 0.013910878 0.02064354 5.18E-06 5.285816731 0.137574101 SS(ph)PIMR ddPTM_HeLa_A485_30min_R1 8 SSPIMR 6 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.119)S(0.881)PIMR;S(0.297)S(0.703)PIMR;S(0.332)S(0.668)PIMR;S(0.061)S(0.939)PIMR;S(0.131)S(0.869)PIMR;S(0.158)S(0.842)PIMR;S(0.234)S(0.766)PIMR;S(0.304)S(0.696)PIMR ;;;;;;; 158.08 0.0016636 6766920000 2844200 3574450 3188420 3225960 4352940 3245840 4211410 3891170 3131100 4275910 TRUE FALSE FALSE 3476882.478 3992450.834 4367949.239 3402186.026 3919546.01 3415787.163 3311607.849 2936854.456 3759483.05 3210004.329 1.083139498 1.243752476 1.360730015 1.059869607 1.221040724 1.064106715 1.031652144 0.914906696 1.171176941 1 21.61414381 -6.376911391 2.785428063 1.022635361 1.200077342 0.390560115 0.098194877 0.282785385 4.251390435 0.037863185 0.03265369 4.20E-07 6.376911391 0.177441981 SS(ph)PIMR ddPTM_HeLa_A486_30min_R1 4 SSPIMR 6 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.18)S(0.82)PIMR;S(0.297)S(0.703)PIMR;S(0.314)S(0.686)PIMR;S(0.316)S(0.684)PIMR ;;; 160.91 0.0015665 6598710000 3492120 3722320 2750500 1074020 3768910 3528580 3886440 3949630 3137260 3695600 TRUE FALSE FALSE 3247340.421 3427349.807 3815567.261 2500372.838 3296178.164 3093259.676 2914011.605 3050385.469 3409200.223 2770197.706 1.172241394 1.237222094 1.377362797 0.902597252 1.18987109 1.116620546 1.05191467 1.101143598 1.230670365 1 21.40155751 -5.245077109 24.98561944 1.093250091 1.25977008 0.402364899 0.098782034 863.2944737 1318271.733 0.0261145 0.045070477 5.69E-06 5.245077109 0.166519989 SS(ph)PINPAQS(ph)GSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK ddPTM_HeLa_A486_30min_R1 1 SSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK 46 0 Q9NZB2;Q9NZB2-4;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 2 0 S(0.466)S(0.534)PINPAQS(0.608)GS(0.39)PNHVDS(0.002)AYFPGSSTSSSSDNDEGSGGATNHISGNK 181.27 3.13E-23 233400000 93388 97834 85633 5876.4 119620 61106 81866 63906 96492 18667 TRUE FALSE FALSE 86841.98346 90081.27753 118792.3909 13680.55618 104616.1442 53567.363 61382.26091 49355.99886 104856.0043 13992.6617 6.206251915 6.437751407 8.489620738 0.977695057 7.476500643 3.828246845 4.386746584 3.527277363 7.49364249 1 13.7723828 -8.584922156 0.163969721 2.31E-22 7.380150446 0.24800885 2.196276229 15.30422318 1.164070779 31.68993999 14.57842018 2.60E-09 8.584922156 7.380150446 SS(ph)PLKITLFLEEDKSLK ddPTM_HeLa_A485_30min_R1 1 SSPLKITLFLEEDKSLK 17 2 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.181)S(0.819)PLKITLFLEEDKSLK 102.07 0.00015056 33717000 24767 30859 17419 40284 83136 70697 164220 249550 33518 71366 TRUE FALSE FALSE 30276.3337 34467.69161 23863.01297 42484.61292 74858.68793 74398.5856 129133.0554 188347.4712 40244.75515 53575.76959 0.565112437 0.643344778 0.445406816 0.792981851 1.397248952 1.388661071 2.41028839 3.515534591 0.75117456 1 15.70929305 -6.065632395 1.476794048 2.073571353 0.563716224 0.365517473 0.734709926 0.379051608 1.679979058 0.303653709 0.321530504 8.60E-07 6.065632395 -1.509855129 SS(ph)PLKLEFDFTEDTGNIEAR ddPTM_HeLa_A485_30min_R1 2 SSPLKLEFDFTEDTGNIEAR 20 1 O75410-2;H0YAY0;O75410;O75410-9;O75410-7;O75410-3;E7ET87;E7EVI4;R4GMT7;E5RFM9 O75410-2 TACC1 Transforming acidic coiled-coil-containing protein 1 1 0 S(0.151)S(0.849)PLKLEFDFTEDTGNIEAR;S(0.158)S(0.842)PLKLEFDFTEDTGNIEAR ; 148.87 7.74E-10 150824000 118062 96028 66005 127906 89380 89848 123375 86756 81324 160925 TRUE FALSE FALSE 144324.4846 107257.6393 90422.9962 134893.1809 80481.01337 94552.30235 97014.92337 65478.95497 97644.98085 120809.3591 1.194646554 0.88782558 0.748476748 1.116578897 0.666181941 0.782657098 0.803041454 0.542002337 0.808256757 1 16.8823727 -5.773707674 24.99995951 0.746705975 0.962777568 0.30808538 0.158038306 277.617445 565718.6393 0.047929608 0.054733212 1.68E-06 5.773707674 0.216071593 SS(ph)PLKLEFDFTEDTGNIEAR ddPTM_HeLa_A486_30min_R1 1 SSPLKLEFDFTEDTGNIEAR 20 1 O75410-2;H0YAY0;O75410;O75410-9;O75410-7;O75410-3;E7ET87;E7EVI4;R4GMT7;E5RFM9 O75410-2 TACC1 Transforming acidic coiled-coil-containing protein 1 1 0 S(0.157)S(0.843)PLKLEFDFTEDTGNIEAR 238.98 1.96E-46 91183000 86566 76784 37518 41574 51099 78366 80604 81011 63258 128310 TRUE FALSE FALSE 80498.17043 70699.3562 52045.97437 96786.37303 44689.68694 68697.99969 60436.02666 62566.56376 68741.25437 96180.34084 0.836950355 0.73507076 0.541129028 1.006300999 0.464644714 0.714262385 0.628361536 0.650513018 0.71471211 1 16.55345442 -8.057194774 19.66562454 1.000000002 0.693334146 0.287555027 0.142223116 1516.895023 521564.9737 0.129957859 0.033554951 8.77E-09 8.057194774 -0.306665856 SS(ph)PLPAK ddPTM_HeLa_A485_30min_R1 4 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 S(0.336)S(0.664)PLPAK;S(0.221)S(0.779)PLPAK;S(0.315)S(0.685)PLPAK;S(0.109)S(0.891)PLPAK ;;; 127.46 0.0017231 5068600000 10465220 9128970 7079440 12788200 9816280 8395280 10896060 8760660 7262410 14115000 TRUE FALSE FALSE 12793172.08 10196523.63 9698419.456 13486786.98 8838936.696 8834843.879 8568027.768 6612094.399 8719909.072 10596390.27 1.207314167 0.962263882 0.915256914 1.272771826 0.834146013 0.833759767 0.808579861 0.623994986 0.822913167 1 23.33706955 -5.91006624 9.056546503 0.798219889 1.067551751 0.501170629 0.130004675 0.241687103 22.0077214 0.03995698 0.045347278 1.23E-06 5.91006624 0.269331862 SS(ph)PLPAK ddPTM_HeLa_A486_30min_R1 3 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 S(0.101)S(0.899)PLPAK;S(0.001)S(0.999)PLPAK;S(0.011)S(0.989)PLPAK ;; 145.13 0.0012574 3420570000 5651660 6253500 2894710 1831870 4335300 5750600 6180200 5642820 4547720 6748000 TRUE FALSE FALSE 5255507.819 5757949.885 4015619.235 4264685.938 3791526.249 5041149.44 4633848.593 4358073.068 4941920.031 5058256.878 1.038995833 1.138326903 0.793874121 0.843113753 0.749571708 0.996617918 0.916095941 0.861576067 0.977000605 1 22.27020887 -2.411978572 10.78857313 0.923463771 0.999463457 0 0.114438527 0 0 0.027608648 0 0.003872768 2.411978572 0.075999687 SS(ph)PLSWR ddPTM_HeLa_A485_30min_R1 5 SSPLSWR 7 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.064)S(0.936)PLSWR;S(0.45)S(0.55)PLSWR;S(0.041)S(0.959)PLSWR;S(0.248)S(0.752)PLSWR;S(0.095)S(0.905)PLSWR ;;;; 185.47 0.00035879 1533430000 1036120 1252640 1116990 1027730 1194750 1078630 1350560 1147090 949460 1390590 TRUE FALSE FALSE 1266601.319 1399125.351 1530211.083 1083872.288 1075796.495 1135105.399 1062001.823 865764.3789 1140007.913 1043941.505 1.213287635 1.340233476 1.465801557 1.038250019 1.030514152 1.08732663 1.017300125 0.829322692 1.092022788 1 19.99360945 -5.334042829 6.834194458 1.008841354 1.339082667 0.740345218 0.088556639 0.123513447 9.847922861 0.025728209 0.038401164 4.63E-06 5.334042829 0.330241313 SS(ph)PLSWR ddPTM_HeLa_A486_30min_R1 4 SSPLSWR 7 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.324)S(0.676)PLSWR;S(0.224)S(0.776)PLSWR;S(0.219)S(0.781)PLSWR;S(0.215)S(0.785)PLSWR ;;; 215.42 1.80E-06 1866390000 1174710 1165900 836360 326728 1069310 975220 1120960 1059800 974410 1285980 TRUE FALSE FALSE 1092368.895 1073509.838 1160220.99 760639.2959 935187.1689 854907.2717 840483.9517 818506.6753 1058872.643 963962.2377 1.133207145 1.113643041 1.203595893 0.789075823 0.970149174 0.88686801 0.871905474 0.849106576 1.098458635 1 19.87861711 -5.250656213 24.99877065 0.915613345 1.146498139 0.600932468 0.084389286 466.0515131 1080452.023 0.022057083 0.037718913 5.61E-06 5.250656213 0.230884794 SS(ph)PNPFITGLTR ddPTM_HeLa_A485_30min_R1 2 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 S(0.172)S(0.828)PNPFITGLTR;S(0.163)S(0.837)PNPFITGLTR ; 213.99 4.72E-18 243354000 226506 259027 260069 240064 328550 257347 318195 325980 255295 321510 TRUE FALSE FALSE 276891.4783 289317.9544 356279.3455 253178.0884 295838.4084 270821.291 250210.0388 246032.8939 306530.3648 241363.474 1.147197104 1.198681597 1.476111276 1.048949472 1.225696679 1.122047535 1.036652459 1.019346009 1.269994833 1 17.88084784 -5.901235674 1.341133134 1.087175901 1.249880108 0.22641993 0.121892797 0.638911427 2.398873965 0.049893467 0.061614524 1.26E-06 5.901235674 0.162704207 SS(ph)PNPFITGLTR ddPTM_HeLa_A486_30min_R1 2 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 S(0.013)S(0.987)PNPFITGLTR;S(0.039)S(0.961)PNPFITGLTR ; 179.46 8.72E-13 213483000 271412 286935 236605 101611 297820 235022 297282 246416 213888 301771 TRUE FALSE FALSE 252387.4204 264197.2256 328224.7925 236555.5431 260464.6385 206027.3752 222898.8993 190312.456 232427.9841 226205.5774 1.115743578 1.167951863 1.451002209 1.045754689 1.151451001 0.910797061 0.985381978 0.841325215 1.027507751 1 17.78727498 -5.95593497 1.647113659 0.943844355 1.225588724 0.532286293 0.109332362 0.275695678 1.528921799 0.041502351 0.04759602 1.11E-06 5.95593497 0.281744369 SS(ph)PNPFVGS(ph)PPK ddPTM_HeLa_A485_30min_R1 3 SSPNPFVGSPPK 12 0 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 2 0 S(0.458)S(0.542)PNPFVGS(1)PPK;S(0.451)S(0.549)PNPFVGS(1)PPK;S(0.419)S(0.581)PNPFVGS(1)PPK ;; 132.81 4.73E-05 1155860000 1032520 670090 529280 1830960 1136680 692030 1086800 846220 713050 2381320 TRUE FALSE FALSE 1262200.512 748451.1965 725082.6972 1930980.709 1023508.148 728263.6207 854596.3017 638683.2182 856152.5945 1787700.749 0.706046866 0.418666937 0.405595119 1.08014762 0.572527672 0.407374456 0.478042146 0.357265173 0.478912701 1 20.76967383 -10.12888615 5.001930879 1.000020112 0.542157506 0.31159163 0.202873598 4.77E-05 8.31E-06 0.20589495 0.049934669 7.43E-11 10.12888615 -0.457862607 SS(ph)PNPFVGS(ph)PPK ddPTM_HeLa_A486_30min_R1 1 SSPNPFVGSPPK 12 0 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 2 0 S(0.448)S(0.552)PNPFVGS(1)PPK 75.669 0.018425 297980000 360040 413140 195840 278990 308990 484310 593080 534640 309390 667710 TRUE FALSE FALSE 334803.0552 380401.2818 271674.4928 649502.8194 270233.593 424560.7563 444685.111 412914.1431 336208.1743 500511.0699 0.668922378 0.760025711 0.542794174 1.297679229 0.539915317 0.848254478 0.88846209 0.824985036 0.671729747 1 18.93304245 -13.04361422 0.026474994 2.008640359 3.84E-06 0.083547558 0.206946536 4672.679847 10.92658895 579.8806255 292.954758 9.04E-14 13.04361422 -2.008636516 SS(ph)PNPFVGS(ph)PPKGLSIQNGVK ddPTM_HeLa_A485_30min_R1 2 SSPNPFVGSPPKGLSIQNGVK 21 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 2 0 S(0.474)S(0.526)PNPFVGS(0.97)PPKGLS(0.03)IQNGVK;S(0.455)S(0.545)PNPFVGS(1)PPKGLSIQNGVK ; 112.34 7.89E-05 583770000 880040 835560 504560 1179560 1359520 1054690 1874310 2007570 804530 1700790 TRUE FALSE FALSE 1075801.862 933271.4736 691217.7405 1243996.376 1224161.415 1109911.938 1473848.357 1515210.31 965991.7914 1276814.354 0.842567174 0.730937486 0.541361192 0.974296986 0.95876226 0.869282159 1.154316877 1.186711526 0.756564013 1 20.28411734 -5.359943564 7.482472336 0.995989336 0.708281938 0.474332015 0.135223693 0.233994082 15.60556718 0.039025894 0.058027291 4.37E-06 5.359943564 -0.287707398 SS(ph)PNPFVGS(ph)PPKGLSIQNGVK ddPTM_HeLa_A486_30min_R1 1 SSPNPFVGSPPKGLSIQNGVK 21 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 2 0 S(0.461)S(0.539)PNPFVGS(0.995)PPKGLS(0.005)IQNGVK 112.11 8.05E-05 307100000 311580 251050 130250 190350 323110 314420 478130 477340 177410 490470 TRUE FALSE FALSE 289739.851 231155.8837 180686.2882 443144.4198 282582.5309 275630.0572 358496.8169 368660.1023 192788.0416 367653.1196 0.788079403 0.628733639 0.491458602 1.205332952 0.768611813 0.749701397 0.975095267 1.002738948 0.524374829 1 18.4879857 -5.229476239 24.99659697 0.882238174 0.635354882 0.280917375 0.185477486 892.5388489 698004.0931 0.049221569 0.085245163 5.90E-06 5.229476239 -0.246883293 SS(ph)PNVANQPPS(ph)PGGK ddPTM_HeLa_A486_30min_R1 1 SSPNVANQPPSPGGK 15 0 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 2 0 S(0.474)S(0.526)PNVANQPPS(1)PGGK 67.274 0.0057304 0 61447 64650 31639 25037 52037 68936 70204 63003 47092 86816 TRUE FALSE FALSE 57139.88261 59526.89855 43890.46812 58287.4013 45510.03423 60431.37721 52638.21666 48658.59225 51173.97248 65076.70852 0.878038916 0.914718951 0.674442041 0.89567224 0.699329073 0.928617605 0.808864152 0.747711329 0.786363872 1 15.98985366 -10.23066729 5.435574977 1.000000657 0.813842057 0.30026938 0.084773629 1.21E-05 1.71E-06 0.078660526 0.019076725 5.88E-11 10.23066729 -0.186158601 SS(ph)PPLPPPAEER ddPTM_HeLa_A485_30min_R1 1 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.034)S(0.966)PPLPPPAEER 135.02 1.70E-05 907530000 263270 321200 294720 265390 408760 284380 369710 371910 267580 369070 TRUE FALSE FALSE 321833.5032 358761.5459 403749.1923 279887.5837 368062.4192 299269.6971 290718.4382 280698.4894 321280.8516 277067.6412 1.161570156 1.294851843 1.457222469 1.010177812 1.328420806 1.080132258 1.049268825 1.013104555 1.159575511 1 18.0798787 -6.224271016 1.17461215 1.048070371 1.270928726 0.370454327 0.118472716 0.504588861 1.439031294 0.058922795 0.054921318 5.97E-07 6.224271016 0.222858355 SS(ph)PPLPPPAEER ddPTM_HeLa_A486_30min_R1 3 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.043)S(0.957)PPLPPPAEER;S(0.032)S(0.968)PPLPPPAEER;S(0.094)S(0.906)PPLPPPAEER ;; 156 5.22E-08 1602940000 647716 709992 580581 221105 798348 665355 713717 774670 603170 706667 TRUE FALSE FALSE 602314.4532 653729.6482 805397.5117 514743.614 698211.7495 583270.2649 535137.4577 598294.5519 655453.2612 529712.9836 1.137058127 1.234120493 1.520441327 0.971740603 1.318094461 1.101106227 1.010240402 1.129469298 1.237374355 1 19.01485134 -5.853463444 1.248679418 1.104128291 1.263918839 0.164348549 0.145814073 0.83425609 2.739763997 0.060721445 0.079709793 1.40E-06 5.853463444 0.159790548 SS(ph)PPLR ddPTM_HeLa_A485_30min_R1 1 SSPPLR 6 0 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 S(0.112)S(0.888)PPLR 77.923 0.022998 418430000 100720 117120 145860 134970 162950 122620 142230 138030 130430 190410 TRUE FALSE FALSE 123124.8165 130816.1652 199819.6837 142343.0693 146726.1258 129040.1936 111841.3986 104177.9261 156606.1046 142944.2912 0.86134826 0.915154876 1.397885022 0.995794013 1.026456703 0.902730655 0.782412488 0.728800886 1.09557439 1 17.12509348 -6.236984332 3.073632389 0.874639284 1.054379 0.138599299 0.16506599 0.45497581 8.75266182 0.061910587 0.058599221 5.79E-07 6.236984332 0.179739716 SS(ph)PPLR ddPTM_HeLa_A486_30min_R1 1 SSPPLR 6 0 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 S(0.179)S(0.821)PPLR 101.28 0.011656 606620000 201430 247080 195420 67223 271570 193440 246430 239980 223130 237700 TRUE FALSE FALSE 187310.7972 227500.481 271091.8575 156498.5413 237507.1583 169575.3396 184770.6075 185341.7927 242471.0881 178178.3728 1.051254393 1.276813102 1.521463314 0.878325123 1.332974112 0.951716737 1.036997951 1.040203644 1.36083344 1 17.44296271 -5.266356176 24.99965453 1.090210237 1.282540548 0.203069786 0.178976895 669.7522052 3405384.431 0.048889896 0.075165063 5.42E-06 5.266356176 0.192330311 SS(ph)PPLRTPDVLESSGPAVR ddPTM_HeLa_A486_30min_R1 2 SSPPLRTPDVLESSGPAVR 19 1 E9PJN1;O75676-2;O75676;A0A0A6YYC0 E9PJN1 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 S(0.251)S(0.749)PPLRTPDVLESSGPAVR;S(0.139)S(0.861)PPLRTPDVLESSGPAVR ; 207.86 4.20E-26 1771090000 248480 241731 160469 69941 255080 180850 264250 233460 166212 245570 TRUE FALSE FALSE 231062.8352 222575.3552 222606.8943 162826.1826 223085.4879 158538.5657 198131.855 180306.2544 180619.39 184077.6736 1.255246389 1.209138245 1.209309581 0.884551502 1.211909535 0.861259069 1.076349191 0.979511805 0.981212911 1 17.48995513 -5.171396251 7.518959012 1.004937116 1.225343239 0.554330126 0.092526753 0.204262104 15.05722295 0.023359324 0.040692376 6.74E-06 5.171396251 0.220406123 SS(ph)PPPGYIPDELHQVAR ddPTM_HeLa_A486_30min_R1 1 SSPPPGYIPDELHQVAR 17 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 S(0.453)S(0.547)PPPGYIPDELHQVAR 134.07 6.33E-06 152730000 56120 92399 67628 26991 68975 70277 63167 64659 68510 75753 TRUE FALSE FALSE 52186.2778 85076.96673 93815.37274 62836.41205 60323.51233 61606.93826 47361.94849 49937.5572 74448.50196 56783.95573 0.919032095 1.498257133 1.652145778 1.106587437 1.062333745 1.084935656 0.834072721 0.879430757 1.311083404 1 15.79319573 -5.47511876 10.30007835 1.021866318 1.372447359 0.325574273 0.210936466 0.771509618 163.8319982 0.060224158 0.0889913 3.35E-06 5.47511876 0.350581041 SS(ph)PQHSLSNPLPR ddPTM_HeLa_A486_30min_R1 1 SSPQHSLSNPLPR 13 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 S(0.138)S(0.86)PQHS(0.001)LSNPLPR 91.441 0.0015068 333040000 116830 121490 109710 40667 158470 136740 135560 138350 100040 139660 TRUE FALSE FALSE 108640.8203 111862.6899 152192.6501 94674.8312 138593.2149 119870.4091 101641.4542 106850.7252 108711.5477 104688.227 1.037755853 1.068531708 1.453770443 0.904350317 1.323866293 1.145022822 0.970896701 1.020656556 1.038431454 1 16.67573968 -6.708180797 7.099313338 1.009397053 1.162132922 0.203935788 0.143050853 0.342548346 36.76857525 0.053549934 0.041027353 1.96E-07 6.708180797 0.152735869 SS(ph)PQKEVK ddPTM_HeLa_A485_30min_R1 1 SSPQKEVK 8 1 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 S(0.118)S(0.882)PQKEVK 85.813 0.002298 413970000 766150 537750 153940 1215300 329650 884830 875360 1303800 497430 1379000 TRUE FALSE FALSE 936577.4243 600635.1847 210888.812 1281688.762 296828.8885 931158.3306 688332.185 984041.0057 597259.6383 1035240.679 0.904695346 0.580188933 0.203709936 1.238058732 0.286724522 0.899460724 0.664900635 0.950543218 0.576928294 1 19.98153478 -10.18643527 0.209440762 1.250074145 0.615114813 0.082692622 0.297135003 50.31659089 2.183640471 7.792084567 0.749177641 6.51E-11 10.18643527 -0.634959333 SS(ph)PQKEVK ddPTM_HeLa_A486_30min_R1 2 SSPQKEVK 8 1 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 S(0.123)S(0.877)PQKEVK;S(0.114)S(0.886)PQKEVK ; 76.228 0.0025259 372410000 1089480 402930 409820 713150 388480 1863580 1041160 902620 884920 2026810 TRUE FALSE FALSE 1013113.078 371000.3594 568513.2794 1660249.241 339753.216 1633670.447 780650.7557 697113.1301 961625.5781 1519283.584 0.666836059 0.244194279 0.374198264 1.092784295 0.223627254 1.075290002 0.513828204 0.458843324 0.632946731 1 20.53495975 SS(ph)PQLAK ddPTM_HeLa_A485_30min_R1 5 SSPQLAK 7 0 Q13370-2;Q13370 Q13370-2 PDE3B "cGMP-inhibited 3,5-cyclic phosphodiesterase B" 1 0 S(0.166)S(0.834)PQLAK;S(0.006)S(0.994)PQLAK;S(0.142)S(0.858)PQLAK;S(0.013)S(0.987)PQLAK;S(0.426)S(0.574)PQLAK ;;;; 104.06 0.0036325 4086000000 6643220 6610870 8104930 17950500 14119900 6028120 10068720 7203200 10666950 26067800 TRUE FALSE FALSE 8120981.37 7383953.74 11103280.88 18931090.36 12714073.18 6343743.042 7917455.718 5436603.906 12807709.02 19569577.2 0.414979909 0.377318 0.567374592 0.967373498 0.649685634 0.324163521 0.404579804 0.277808961 0.6544704 1 24.22210925 -8.015355838 23.774344 1.000000016 0.50539455 0.394371421 0.189068215 543.686849 841752.8087 0.203496236 0.052542502 9.65E-09 8.015355838 -0.494605466 SS(ph)PQLAK ddPTM_HeLa_A486_30min_R1 4 SSPQLAK 7 0 Q13370-2;Q13370 Q13370-2 PDE3B "cGMP-inhibited 3,5-cyclic phosphodiesterase B" 1 0 S(0.046)S(0.954)PQLAK;S(0.009)S(0.991)PQLAK;S(0.073)S(0.927)PQLAK;S(0.19)S(0.81)PQLAK ;;; 102.51 0.0039826 4435640000 14838800 13740100 6560850 4657310 12256100 13033010 13143710 14827700 9811100 15337600 TRUE FALSE FALSE 13798676.75 12651284.44 9101386.826 10842453.05 10718825.65 11425129.74 9855014.738 11451756.4 10661534.05 11496965.13 1.20020167 1.100402088 0.791633855 0.943070882 0.932317836 0.993751795 0.857184016 0.996067768 0.927334642 1 23.45474975 -4.57301841 6.796513519 0.930453486 1.17660141 0.679551119 0.062133138 0.090679533 9.390702728 0.015256265 0.041642399 2.67E-05 4.57301841 0.246147924 SS(ph)PQLDPLR ddPTM_HeLa_A485_30min_R1 4 SSPQLDPLR 9 0 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.008)S(0.992)PQLDPLR;S(0.049)S(0.951)PQLDPLR;S(0.296)S(0.704)PQLDPLR;S(0.116)S(0.884)PQLDPLR ;;; 147.62 8.64E-05 2541873000 1560290 1571480 1567080 1790170 1902030 1395800 1715660 1466650 1537170 2325950 TRUE FALSE FALSE 1907371.128 1755250.916 2146808.104 1887962.454 1712657.215 1468881.93 1349095.225 1106951.788 1845665.919 1746133.471 1.092339824 1.005221505 1.229463921 1.081224595 0.980828352 0.841219732 0.772618616 0.633944545 1.057001627 1 20.73573241 -6.026834774 2.420342851 0.831696409 1.105005895 0.458577917 0.121567463 0.242369408 2.837993425 0.042662548 0.045754053 9.40E-07 6.026834774 0.273309486 SS(ph)PQLDPLR ddPTM_HeLa_A486_30min_R1 5 SSPQLDPLR 9 0 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.378)S(0.622)PQLDPLR;S(0.298)S(0.702)PQLDPLR;S(0.042)S(0.958)PQLDPLR;S(0.206)S(0.794)PQLDPLR;S(0.354)S(0.646)PQLDPLR ;;;; 160.88 1.35E-05 4913980000 2876600 3415090 2239450 1035750 2903970 2990060 3047870 3039010 2864010 3143790 TRUE FALSE FALSE 2674965.195 3144465.831 3106625.015 2411278.344 2539727.004 2621176.798 2285260.689 2347093.764 3112264.693 2356564.521 1.135112224 1.334343194 1.318285575 1.023217621 1.077724366 1.112287304 0.969742465 0.995981117 1.320678753 1 21.16825375 -5.261924476 24.99996084 1.068942919 1.269756623 0.406102447 0.105825551 40.70322284 2097723.459 0.028911671 0.046026123 5.47E-06 5.261924476 0.200813704 SS(ph)PQLDPLRK ddPTM_HeLa_A485_30min_R1 5 SSPQLDPLRK 10 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.345)S(0.655)PQLDPLRK;S(0.119)S(0.881)PQLDPLRK;S(0.134)S(0.866)PQLDPLRK;S(0.051)S(0.949)PQLDPLRK;S(0.135)S(0.865)PQLDPLRK ;;;; 168.76 1.92E-07 16694030000 6364330 5412810 4071390 7602830 5776060 5122530 7231900 5345360 4869670 9478670 TRUE FALSE FALSE 7780053.252 6045791.044 5577566.586 8018153.352 5200975.185 5390737.75 5686745.486 4034402.079 5846968.102 7115812.011 1.093347216 0.849627707 0.783827141 1.126807923 0.730903961 0.757571693 0.799170281 0.566962993 0.821686702 1 22.76259697 -5.80544187 24.99992082 0.757629416 0.942449544 0.28519956 0.138627428 167.1649517 94973.48198 0.041706291 0.047290747 1.57E-06 5.80544187 0.184820128 SS(ph)PQLDPLRK ddPTM_HeLa_A486_30min_R1 6 SSPQLDPLRK 10 1 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 S(0.433)S(0.567)PQLDPLRK;S(0.122)S(0.878)PQLDPLRK;S(0.387)S(0.613)PQLDPLRK;S(0.392)S(0.608)PQLDPLRK;S(0.193)S(0.807)PQLDPLRK;S(0.404)S(0.596)PQLDPLRK ;;;;; 153.18 1.65E-06 31529650000 11795420 11329270 5467531 3546512 7704200 10853700 11816790 10611300 8756150 12868260 TRUE FALSE FALSE 10968621.97 10431497.38 7584705.429 8256459.167 6737867.397 9514680.846 8860104.157 8195338.633 9515140.132 9645963.938 1.137120358 1.08143649 0.786308707 0.85594962 0.698516752 0.986389842 0.918529679 0.849613236 0.986437456 1 23.20149399 -4.655066533 5.96126881 0.877380524 1.121746363 0.493969057 0.090933098 0.155478501 7.492993077 0.023275724 0.063322 2.21E-05 4.655066533 0.244365839 SS(ph)PQLDPLRKS(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_HeLa_A485_30min_R1 6 SSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGR 33 2 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 2 0 S(0.457)S(0.543)PQLDPLRKS(0.888)PT(0.111)MEQAVQT(0.001)ASAHLPAPAAVGR;S(0.484)S(0.517)PQLDPLRKS(0.888)PT(0.095)MEQAVQT(0.012)AS(0.005)AHLPAPAAVGR;S(0.462)S(0.537)PQLDPLRKS(0.789)PT(0.212)MEQAVQTASAHLPAPAAVGR;S(0.487)S(0.513)PQLDPLRKS(0.404)PT(0.063)MEQAVQT(0.28)AS(0.253)AHLPAPAAVGR;S(0.485)S(0.514)PQLDPLRKS(0.683)PT(0.167)MEQAVQT(0.115)AS(0.035)AHLPAPAAVGR;S(0.475)S(0.525)PQLDPLRKS(0.968)PT(0.028)MEQAVQT(0.003)AS(0.001)AHLPAPAAVGR ;;;;; 165.21 1.75E-14 6751240000 699235 811190 712872 609587 1367542 889083 1376340 1346670 866020 1222063 TRUE FALSE FALSE 854777.4134 906051.6141 976593.0179 642887.1943 1231384.717 935634.0111 1082273.715 1016397.071 1039822.27 917425.1845 0.931713482 0.987602727 1.064493361 0.700751631 1.342218131 1.019847751 1.179686075 1.107880063 1.133413697 1 19.80723099 -5.766055967 24.99999944 1.132827513 0.936127134 0.407486124 0.12313382 120.3221341 651575.2679 0.035931551 0.042099516 1.71E-06 5.766055967 -0.196700378 SS(ph)PQLDPLRKS(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_HeLa_A486_30min_R1 4 SSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGR 33 2 Q8ND56;Q8ND56-2;Q8ND56-3 Q8ND56 LSM14A Protein LSM14 homolog A 2 0 S(0.468)S(0.529)PQLDPLRKS(0.5)PT(0.5)MEQAVQT(0.004)ASAHLPAPAAVGR;S(0.469)S(0.531)PQLDPLRKS(0.991)PT(0.009)MEQAVQTASAHLPAPAAVGR;S(0.476)S(0.524)PQLDPLRKS(0.815)PT(0.183)MEQAVQT(0.001)AS(0.001)AHLPAPAAVGR;S(0.485)S(0.515)PQLDPLRKS(0.858)PT(0.058)MEQAVQT(0.04)AS(0.044)AHLPAPAAVGR ;;; 114.3 3.82E-05 4210410000 749340 740560 544659 61746.4 975396 752057 1071428 1041174 640382 607600 TRUE FALSE FALSE 696815.1356 681875.3285 755565.5513 143748.7397 853052.7385 659275.8537 803345.382 804121.4089 695890.8274 455453.0052 1.529938605 1.497136523 1.65893197 0.315617063 1.872976419 1.44751675 1.763838141 1.765541998 1.527909179 1 18.79694268 SS(ph)PRPTAEK ddPTM_HeLa_A485_30min_R1 1 SSPRPTAEK 9 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.115)S(0.885)PRPTAEK 55.452 0.019896 164130000 409630 373750 211050 539640 295900 378510 476900 546610 315570 631460 TRUE FALSE FALSE 500750.7803 417456.8113 289126.1775 569119.1668 266439.157 398328.1983 375006.4191 412553.0404 378902.0044 474048.6432 1.056327842 0.880620201 0.609908248 1.200550144 0.562050247 0.840268618 0.791071601 0.870275754 0.799289292 1 18.85467558 -4.312686227 4.275575729 0.827142006 1.064332368 0.128594967 0.170802094 0.35803647 12.89441905 0.039917475 0.222469464 4.87E-05 4.312686227 0.237190363 SS(ph)PSARPPDVPGQQPQAAK ddPTM_HeLa_A485_30min_R1 1 SSPSARPPDVPGQQPQAAK 19 1 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 S(0.461)S(0.539)PSARPPDVPGQQPQAAK 97.253 0.00016848 356180000 272770 222820 184880 317000 342430 244690 361400 368440 226810 409660 TRUE FALSE FALSE 333446.7455 248876.8607 253274.8055 334316.9073 308336.4669 257501.59 284183.9376 278079.5123 272328.6866 307539.3012 1.084241084 0.809252215 0.823552647 1.087070517 1.002592077 0.837296531 0.924057304 0.904208051 0.885508569 1 18.23041126 -8.990274087 15.17353142 0.999996285 0.925334304 0.04696453 0.095392859 0 0 0.093188895 0.022601627 1.02E-09 8.990274087 -0.07466198 SS(ph)PSGITHVIASNAR ddPTM_HeLa_A485_30min_R1 1 SSPSGITHVIASNAR 15 0 Q9BQI6 Q9BQI6 ANKRD32 Ankyrin repeat domain-containing protein 32 1 0 S(0.186)S(0.813)PS(0.001)GITHVIASNAR 59.709 0.014438 0 72595 97019 87753 90012 126290 96685 111480 138160 86303 122900 TRUE FALSE FALSE 88743.5073 108364.5281 120216.4864 94929.12764 113716.1242 101747.2771 87661.38729 104276.0434 103623.2205 92263.29181 0.961850651 1.174514002 1.302972006 1.028893786 1.232517526 1.102792618 0.950122043 1.130200769 1.123125118 1 16.49346915 -6.523536182 24.99624944 1.05667566 1.147196697 0.141686645 0.10248309 46.30941643 1760549.867 0.03864426 0.030215275 3.00E-07 6.523536182 0.090521037 SS(ph)PSIICMPK ddPTM_HeLa_A485_30min_R1 2 SSPSIICMPK 10 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 S(0.133)S(0.867)PSIICMPK;S(0.356)S(0.644)PSIICMPK ; 180.36 1.60E-09 268070000 434330 347600 287540 591010 463740 328040 460280 370840 356800 749400 TRUE FALSE FALSE 530945.2101 388248.7963 393913.0115 623295.3798 417568.4173 345215.6672 361937.4179 279890.9085 428406.4872 562588.3717 0.943754327 0.690111662 0.700179796 1.107906617 0.742227245 0.613620339 0.643343226 0.497505677 0.761491899 1 19.10172021 -5.993589311 24.97423515 0.669143302 0.847892649 0.152439188 0.165744679 263.1654525 1025208.366 0.050549404 0.057174856 1.01E-06 5.993589311 0.178749347 SS(ph)PSILAVQR ddPTM_HeLa_A486_30min_R1 1 SSPSILAVQR 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.132)S(0.866)PS(0.002)ILAVQR 65.5 0.012928 0 50688 50045 43195 16260 65803 49625 55033 47732 43466 48082 TRUE FALSE FALSE 47135.03295 46079.25194 59921.2608 37854.10173 57549.37415 43502.77205 41263.16132 36864.46558 47233.66788 36041.95424 1.307782387 1.278489275 1.662541948 1.050278836 1.596732901 1.207003698 1.144864705 1.022820942 1.310519057 1 15.13738962 -6.506409753 20.17092287 1.129235393 1.374126313 0.327631474 0.176719066 69.14095156 84684.31782 0.059830191 0.051131263 3.12E-07 6.506409753 0.24489092 SS(ph)PSKCPSLDDR ddPTM_HeLa_A485_30min_R1 1 SSPSKCPSLDDR 12 1 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 S(0.451)S(0.548)PSKCPSLDDR 73.022 0.0050721 517250000 432040 392400 326040 679090 469800 432740 597460 525460 358610 919190 TRUE FALSE FALSE 528145.8075 438287.7666 446655.7637 716186.9672 423025.0624 455397.5973 469807.7902 396590.1111 430579.7376 690052.8494 0.765370084 0.635151013 0.647277617 1.037872632 0.613032846 0.65994597 0.680828708 0.574724257 0.623980812 1 19.39634733 -9.853048673 4.279222234 1.000003578 0.693040732 0.352028874 0.124899871 762197394.2 1728267657 45803.24048 0.032025223 1.40E-10 9.853048673 -0.306962846 SS(ph)PSKCPSLDDR ddPTM_HeLa_A486_30min_R1 1 SSPSKCPSLDDR 12 1 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 S(0.429)S(0.57)PSKCPSLDDR 121.76 4.02E-05 441600000 747820 782350 394110 377180 710710 843390 1028900 935430 594330 1051500 TRUE FALSE FALSE 695401.6797 720353.7367 546719.9466 878094.1016 621566.1247 739341.1168 771458.3374 722453.0093 645847.0029 788197.5559 0.882268252 0.913925362 0.693633141 1.114053317 0.788591794 0.938014983 0.978762661 0.916588746 0.819397368 1 19.58819775 -5.244581565 24.98824972 0.928674384 0.838340603 0.184797205 0.101164422 1617.957132 2398286.584 0.026398473 0.04556356 5.69E-06 5.244581565 -0.090333782 SS(ph)PSPALEQPFR ddPTM_HeLa_A486_30min_R1 1 SSPSPALEQPFR 12 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.042)S(0.958)PSPALEQPFR 201.38 4.58E-17 349480000 200620 187120 155000 55502 188060 163710 149620 155810 138020 172740 TRUE FALSE FALSE 186557.574 172291.9297 215020.151 129211.4609 164471.7612 143513.1247 112183.4935 120335.4643 149983.6847 129484.7797 1.440768363 1.330595999 1.660582438 0.997889183 1.270201499 1.108339722 0.86638363 0.929340612 1.15831131 1 16.982423 -5.62536653 1.118528807 0.999521101 1.463467297 0.584899527 0.152735701 0.355426119 0.9280735 0.062212464 0.108636948 2.37E-06 5.62536653 0.463946196 SS(ph)PSTENMHFPSSISSQTR ddPTM_HeLa_A485_30min_R1 1 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.139)S(0.463)PS(0.372)T(0.025)ENMHFPSSISSQTR 146.15 1.55E-08 670890000 304390 501130 455340 229330 554310 410610 480620 520580 400430 374910 TRUE FALSE FALSE 372100.5054 559732.7942 623789.2143 241857.7172 499120.9501 432108.9047 377931.6107 392906.9388 480792.628 281451.8367 1.322075243 1.988733848 2.216326678 0.859321865 1.773379616 1.535285432 1.342793194 1.396000621 1.708258982 1 18.10252854 -11.64841667 0.116823566 8.51E-11 1.928808406 0.187642409 0.360182235 132.2970896 1.813576839 39.88291893 4.530866608 2.25E-12 11.64841667 1.928808406 SS(ph)PSVKPAVDPAAAK ddPTM_HeLa_A485_30min_R1 1 SSPSVKPAVDPAAAK 15 1 Q6FI81-3;Q6FI81;H3BPG7;H3BV90;H3BT65 Q6FI81-3 CIAPIN1 Anamorsin 1 0 S(0.203)S(0.796)PS(0.001)VKPAVDPAAAK 88.385 0.00063301 393410000 230210 173460 108530 372550 298130 233970 369240 374810 191880 557220 TRUE FALSE FALSE 281419.4203 193744.6381 148679.7633 392901.4632 268447.1304 246220.3074 290348.8576 282887.2598 230388.556 418315.3089 0.672744732 0.463154549 0.355425107 0.939247154 0.641733938 0.588599801 0.69409092 0.676253663 0.550753346 1 18.67423127 -14 0.225253715 2.949078261 0.576784963 0.370864877 0.147116435 177.8094263 1.78056541 157.9812765 0.277123397 1.00E-14 14 -2.372293298 SS(ph)PTPESR ddPTM_HeLa_A485_30min_R1 2 SSPTPESR 8 0 Q8NCA9;K7EQ92 Q8NCA9 ZNF784 Zinc finger protein 784 1 0 S(0.188)S(0.812)PTPESR;S(0.113)S(0.88)PT(0.007)PESR ; 176.6 3.29E-09 32382000 284520 427790 278861 381747 379250 393260 438720 587730 427580 490840 TRUE FALSE FALSE 347810.4924 477816.3192 382023.2883 402600.872 341490.5384 413850.4855 344983.888 443588.296 513391.384 368482.6212 0.943899311 1.296713309 1.036747098 1.092591207 0.926748017 1.123120771 0.936228381 1.203824198 1.393258065 1 18.49123705 -7.432220599 8.562247981 1.230154631 1.059717666 0.187513163 0.137013223 0.464459388 40.00171441 0.071600757 0.034178118 3.70E-08 7.432220599 -0.170436965 SS(ph)PTPESR ddPTM_HeLa_A486_30min_R1 2 SSPTPESR 8 0 Q8NCA9;K7EQ92 Q8NCA9 ZNF784 Zinc finger protein 784 1 0 S(0.214)S(0.785)PT(0.001)PESR;S(0.084)S(0.912)PT(0.004)PESR ; 161.79 3.97E-05 219720000 513580 321280 449310 210033 394790 644980 441750 421420 564370 622540 TRUE FALSE FALSE 477580.6941 295820.6027 623294.8649 488967.4385 345271.7569 565408.9253 331219.4776 325471.8655 613290.046 466651.9319 1.023419516 0.633921307 1.335674027 1.047820452 0.739891412 1.211628811 0.709778434 0.697461734 1.314234452 1 18.83198734 SS(ph)PVEFECINEK ddPTM_HeLa_A485_30min_R1 3 SSPVEFECINEK 12 0 H0YB26;O75131 H0YB26 CPNE3 Copine-3 1 0 S(0.143)S(0.857)PVEFECINEK;S(0.006)S(0.994)PVEFECINEK;S(0.129)S(0.871)PVEFECINEK ;; 239.38 9.64E-28 285362000 229109.9 209889 151778.6 337031.8 282292 233220.2 350538.8 308761.8 224652.9 456853 TRUE FALSE FALSE 280074.6068 234433.6928 207927.8202 355442.9938 254186.0173 245431.249 275643.3217 233037.4844 269738.6764 342967.9549 0.816620337 0.683544015 0.606260198 1.036373774 0.741136347 0.715609857 0.803699931 0.679473056 0.786483613 1 18.38771426 -8.041868215 21.41583023 1.000000004 0.75939792 0.298799133 0.109451605 1630.472162 833996.5073 0.105403209 0.027214966 9.08E-09 8.041868215 -0.240602084 SS(ph)PVEFECINEK ddPTM_HeLa_A486_30min_R1 2 SSPVEFECINEK 12 0 H0YB26;O75131 H0YB26 CPNE3 Copine-3 1 0 S(0.158)S(0.842)PVEFECINEK;S(0.159)S(0.841)PVEFECINEK ; 242.07 7.65E-28 472900000 578040 687060 356972 279734 588190 728020 798020 832170 529230 897800 TRUE FALSE FALSE 537522.381 632614.8634 495201.1184 651234.889 514413.7255 638204.2944 598346.9554 642703.0571 575104.0825 672985.0363 0.798713719 0.940013268 0.735827829 0.967681083 0.764376172 0.948318699 0.889093996 0.955003488 0.854557013 1 19.3602149 -13.99999977 0.068774684 1.457521997 0.709586832 0.255041625 0.07582967 430.3483933 2.130532205 31.0642154 4.001977468 1.00E-14 13.99999977 -0.747935166 SS(ph)PVESLKK ddPTM_HeLa_A485_30min_R1 4 SSPVESLKK 9 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.412)S(0.588)PVESLKK;S(0.103)S(0.897)PVESLKK;S(0.404)S(0.596)PVESLKK;S(0.085)S(0.915)PVESLKK ;;; 134.75 0.00011437 3030910000 4406880 3239000 2016450 6384300 4257030 4200950 6775100 6161700 3369680 8162800 TRUE FALSE FALSE 5387175.252 3617772.874 2762418.766 6733058.143 3833185.146 4420905.246 5327544.538 4650533.414 4045943.867 6127964.185 0.879113371 0.590371087 0.450788987 1.098743064 0.625523425 0.721431313 0.869382453 0.758903491 0.660242741 1 22.54697643 -14 0.26577385 2.728886458 0.718439219 0.166045446 0.171360844 376.2262475 3.679140793 356.7079142 0.21810598 1.00E-14 14 -2.010447239 SS(ph)PVESLKK ddPTM_HeLa_A486_30min_R1 5 SSPVESLKK 9 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.007)S(0.993)PVESLKK;S(0.118)S(0.882)PVESLKK;S(0.133)S(0.867)PVESLKK;S(0.05)S(0.95)PVESLKK;S(0.036)S(0.964)PVESLKK ;;;; 176.62 8.39E-07 8722490000 15663100 13794000 4971760 6257330 10673700 15950000 19592800 17659600 10266360 22353100 TRUE FALSE FALSE 14565197.57 12700913.2 6896958.62 14567380.47 9334905.018 13982251.17 14690474.21 13638894.59 11156256.35 16755738.27 0.869266238 0.758003796 0.41161771 0.869396516 0.557116903 0.834475387 0.876742879 0.813983506 0.665817058 1 23.99815192 -6.318787922 24.92865843 0.828986557 0.690845497 0.190044853 0.149158285 493.9044291 214692.1689 0.051582314 0.04549134 4.80E-07 6.318787922 -0.138141061 SS(ph)PVGGGPR ddPTM_HeLa_A485_30min_R1 3 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.269)S(0.731)PVGGGPR;S(0.347)S(0.653)PVGGGPR;S(0.108)S(0.892)PVGGGPR ;; 182.16 3.30E-08 4590780000 1008460 1182060 1110320 1219290 1372480 1031880 1281220 1187490 1138050 1575190 TRUE FALSE FALSE 1232788.448 1320291.634 1521073.572 1285896.725 1235831.072 1085907.641 1007476.88 896256.2156 1366446.196 1182524.122 1.042505962 1.116502919 1.286293906 1.087416909 1.045078953 0.918296397 0.851971526 0.757917914 1.155533465 1 20.17343818 -5.98964694 2.213104209 0.916182109 1.145719565 0.398254772 0.112829843 0.287668824 2.837610539 0.04053596 0.044637881 1.02E-06 5.98964694 0.229537456 SS(ph)PVGGGPR ddPTM_HeLa_A486_30min_R1 2 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.065)S(0.935)PVGGGPR;S(0.411)S(0.589)PVGGGPR ; 171.33 5.47E-06 4414100000 857070 1017030 846930 403543 999010 941900 1077880 1034610 872020 1003370 TRUE FALSE FALSE 796993.8189 936436.8388 1174883.978 939468.4979 873704.8504 825697.9545 808183.0233 799051.8884 947607.3957 752119.6212 1.059663645 1.245063701 1.562097231 1.249094521 1.161656771 1.097827967 1.074540539 1.062400004 1.259915802 1 19.52060261 -5.810326152 3.128047898 1.104313343 1.300026741 0.297690286 0.129892355 0.317219417 6.333931476 0.043510641 0.052557367 1.55E-06 5.810326152 0.195713398 SS(ph)PVKKPSLLK ddPTM_HeLa_A485_30min_R1 2 SSPVKKPSLLK 11 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 S(0.144)S(0.856)PVKKPSLLK;S(0.102)S(0.898)PVKKPSLLK ; 112.15 0.00021478 1919540000 3300000 1896530 1108990 4954000 2567800 2425000 3992200 3002400 2086200 5846900 TRUE FALSE FALSE 4034073.615 2118312.686 1519251.55 5224624.476 2312140.816 2551969.25 3139233.857 2266056.692 2504881.204 4389375.434 0.919054129 0.482600023 0.346120211 1.190288813 0.526758499 0.581396895 0.715189189 0.516259483 0.570669163 1 22.06558424 -10.82092336 6.355761694 1.025882606 0.644224186 0.171110157 0.230927092 0.077724857 0.002189933 0.205195673 0.053046583 1.51E-11 10.82092336 -0.38165842 SS(ph)PVKKPSLLK ddPTM_HeLa_A486_30min_R1 1 SSPVKKPSLLK 11 2 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 S(0.421)S(0.579)PVKKPSLLK 142.85 4.82E-07 1547000000 2445300 2217000 690700 982630 1435300 2717800 3114000 2886900 1781200 3623000 TRUE FALSE FALSE 2273897.098 2041316.846 958157.5376 2287612.299 1255271.29 2382505.469 2334844.263 2229615.891 1935595.85 2715777.218 0.837291469 0.751651068 0.352811538 0.842341663 0.462214383 0.877283104 0.859733357 0.8209863 0.712722618 1 21.37293371 -6.298703802 24.87033182 0.843306026 0.649207398 0.294896302 0.157960627 741.1026529 494610.7888 0.054321208 0.047908068 5.03E-07 6.298703802 -0.194098629 SS(ph)PVKVGEK ddPTM_HeLa_A485_30min_R1 4 SSPVKVGEK 9 1 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 S(0.111)S(0.889)PVKVGEK;S(0.145)S(0.855)PVKVGEK;S(0.205)S(0.795)PVKVGEK;S(0.009)S(0.991)PVKVGEK ;;; 140.14 6.63E-05 2733340000 5879810 3864560 2292690 10081000 6042110 5219940 9743400 7569330 4327860 13507800 TRUE FALSE FALSE 7187753.449 4316486.675 3140851.438 10631699.5 5440536.313 5493247.987 7661642.994 5712939.949 5196421.805 10140554.05 0.708812695 0.425665763 0.309731739 1.048433789 0.536512728 0.541710833 0.755544811 0.563375524 0.512439634 1 23.27363314 -10.53767472 2.765427114 1.021077563 0.59963699 0.280877347 0.191889183 31422074.24 32386461.33 4944940.775 0.04871896 2.90E-11 10.53767472 -0.421440573 SS(ph)PVKVGEK ddPTM_HeLa_A486_30min_R1 3 SSPVKVGEK 9 1 P49916-4;P49916-3;P49916-2;P49916 P49916-4 LIG3 DNA ligase 3 1 0 S(0.085)S(0.915)PVKVGEK;S(0.123)S(0.877)PVKVGEK;S(0.13)S(0.87)PVKVGEK ;; 146.5 4.51E-05 2106500000 2314900 2110910 852101 1429350 1844670 2859680 3815010 3351290 1828540 4217590 TRUE FALSE FALSE 2152637.464 1943633.804 1182057.327 3327599.035 1613294.288 2506881.757 2860454.147 2588274.425 1987039.319 3161478.012 0.680895915 0.614786437 0.373893895 1.052545367 0.510297488 0.792946131 0.904783818 0.818691263 0.628515938 1 21.59216776 -5.524802138 0.070169346 1.373481822 5.30E-12 0.232958755 0.1794404 107.7500025 1.979699668 13.79049633 25.23353429 2.99E-06 5.524802138 -1.373481822 SS(ph)PVLQHK ddPTM_HeLa_A485_30min_R1 1 SSPVLQHK 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 S(0.226)S(0.774)PVLQHK 139.15 0.00032028 1176700000 1469600 1427900 1087600 1786000 1779700 1517400 2367400 2191200 1352700 2380600 TRUE FALSE FALSE 1796507.45 1594880.484 1489948.499 1883564.658 1602506.819 1596848.718 1861585.65 1653804.764 1624174.482 1787160.232 1.005230207 0.89241046 0.833696091 1.053942799 0.896677752 0.893511779 1.041644514 0.925381359 0.908801826 1 20.76923756 SS(ph)PVLQHK ddPTM_HeLa_A486_30min_R1 1 SSPVLQHK 8 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 S(0.155)S(0.845)PVLQHK 145.23 0.00024425 1673600000 1850600 1654500 1126800 798920 1728800 2157800 2291800 2066900 1578200 2422700 TRUE FALSE FALSE 1720882.497 1523391.394 1563127.137 1859926.135 1511957.784 1891592.575 1718367.4 1596311.99 1714999.647 1816040.151 0.947601569 0.838853367 0.860733798 1.024165757 0.832557465 1.041602838 0.946216635 0.879006992 0.944362186 1 20.79236467 -5.210918593 24.99819409 0.945963456 0.878041923 0.191195242 0.064963856 607.3007335 300497.4935 0.016939419 0.029339911 6.15E-06 5.210918593 -0.067921533 SS(ph)PVNNHHS(ph)PGQTPTLGQPEAR ddPTM_HeLa_A485_30min_R1 2 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 2 0 S(0.466)S(0.538)PVNNHHS(0.996)PGQTPTLGQPEAR;S(0.451)S(0.549)PVNNHHS(1)PGQTPTLGQPEAR ; 126.36 1.17E-06 1476970000 302570 333420 291720 298710 387480 319970 430870 407280 328810 370270 TRUE FALSE FALSE 369875.6526 372410.5686 399639.3675 315027.7709 348901.1307 336723.1344 338811.1046 307393.9414 394799.151 277968.5033 1.330638717 1.339758153 1.437714571 1.133321823 1.255182247 1.211371542 1.218883077 1.105858893 1.420301747 1 18.08456189 -14 0.046717597 4.32E-06 1.800907248 0.37933663 0.105095472 663.6283099 2.29570191 87.66725571 21.55869265 1.00E-14 14 1.800902926 SS(ph)PVNNHHS(ph)PGQTPTLGQPEAR ddPTM_HeLa_A486_30min_R1 2 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 2 0 S(0.476)S(0.596)PVNNHHS(0.927)PGQTPTLGQPEAR;S(0.454)S(0.547)PVNNHHS(0.999)PGQTPTLGQPEAR ; 141.82 1.11E-09 2230600000 454120 481710 405480 117761 530370 475160 543990 517960 442150 514690 TRUE FALSE FALSE 422288.5331 443537.5452 562492.7151 274153.5593 463846.0491 416539.5903 407877.9483 400031.815 480475.918 385808.2739 1.094555409 1.14963202 1.457959181 0.710595334 1.20227087 1.079654373 1.057203735 1.036866864 1.245374842 1 18.55752456 -5.232760373 24.99998624 1.057162103 1.225607082 0.218997554 0.16053311 1216.308674 1060276.09 0.042189406 0.073056121 5.85E-06 5.232760373 0.168444979 SS(ph)PVNRPSSATNK ddPTM_HeLa_A485_30min_R1 4 SSPVNRPSSATNK 13 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR72;A0A0A0MR80 Q96L91-3 EP400 E1A-binding protein p400 1 0 S(0.192)S(0.808)PVNRPSSATNK;S(0.311)S(0.689)PVNRPSSATNK;S(0.153)S(0.847)PVNRPSSATNK;S(0.012)S(0.988)PVNRPSSATNK ;;; 204.13 6.98E-22 1104870000 1037390 1077790 823576 1372370 1334240 1127020 1506250 1449100 1064790 1851960 TRUE FALSE FALSE 1268153.827 1203828.165 1128251.034 1447339.098 1201398.381 1186029.024 1184427.383 1093705.953 1278483.586 1390300.455 0.912143718 0.865876265 0.811515979 1.041026127 0.864128597 0.853073895 0.851921884 0.786668773 0.919573594 1 20.40696526 -5.912130747 21.36199012 0.865843235 0.904635245 0.01442091 0.075065099 23.61532424 5728.224829 0.022933269 0.026003878 1.22E-06 5.912130747 0.03879201 SS(ph)PVNRPSSATNK ddPTM_HeLa_A486_30min_R1 3 SSPVNRPSSATNK 13 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR72;A0A0A0MR80 Q96L91-3 EP400 E1A-binding protein p400 1 0 S(0.124)S(0.876)PVNRPSSATNK;S(0.142)S(0.858)PVNRPSSATNK;S(0.03)S(0.97)PVNRPSSATNK ;; 208.85 4.07E-22 1311660000 1286840 1178250 610720 455484 1084810 1181700 1373320 1314640 916820 1389510 TRUE FALSE FALSE 1196639.161 1084881.179 847207.1396 1060389.771 948743.0143 1035913.869 1029700.811 1015325.17 996290.6958 1041567.652 1.148882801 1.041584939 0.813396171 1.018070952 0.910879877 0.994571852 0.988606749 0.974804823 0.95652999 1 19.99032512 -4.523727616 24.98753803 0.957083215 1.122058389 0.528126376 0.056369417 17.05261576 501988.3796 0.013727773 0.037005391 2.99E-05 4.523727616 0.164975174 SS(ph)PYGTLKPEEMSGPGLAEPK ddPTM_HeLa_A485_30min_R1 1 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 S(0.077)S(0.923)PYGTLKPEEMSGPGLAEPK 153.87 4.01E-10 224300000 106350 73146 41344 162640 101300 76913 155530 130680 69068 230320 TRUE FALSE FALSE 130007.1906 81699.78841 56638.86607 171524.6114 91214.21631 80940.04575 122299.7449 98630.5251 82929.31407 172905.4627 0.751897531 0.47251132 0.327571293 0.992013836 0.527538083 0.468117343 0.707321463 0.570430359 0.47962229 1 17.39962392 -10.82099713 2.769211758 1.131904141 0.586958066 0.325551213 0.177648556 90927905.87 68054888.51 80178324.95 0.047199295 1.51E-11 10.82099713 -0.544946075 SS(ph)PYGTLKPEEMSGPGLAEPK ddPTM_HeLa_A486_30min_R1 2 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065;Q5JSZ5-5 Q5JSZ5;Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 S(0.031)S(0.969)PYGTLKPEEMSGPGLAEPK;S(0.017)S(0.983)PYGTLKPEEMSGPGLAEPK ; 290.66 3.54E-87 812110000 563730 459390 172116 293440 327100 634760 788570 760550 352670 974670 TRUE FALSE FALSE 524215.4381 422986.2633 238763.9246 683143.1496 286072.0679 556449.765 591261.4454 587389.3677 383239.7196 730606.288 0.717507427 0.578952399 0.32680245 0.935035957 0.391554347 0.761627396 0.809275057 0.803975243 0.524550262 1 19.47873464 -6.471808893 24.99394814 0.770591619 0.592176434 0.199684449 0.189705927 615.3894794 301175.9608 0.064052155 0.056488023 3.37E-07 6.471808893 -0.178415185 SS(ph)RGQEEISGALPVASPASSR ddPTM_HeLa_A485_30min_R1 1 SSRGQEEISGALPVASPASSR 21 1 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 0 S(0.057)S(0.929)RGQEEIS(0.012)GALPVAS(0.002)PASSR 217.21 2.58E-34 781880000 270340 400940 423220 355450 647950 399810 603030 668570 374790 523700 TRUE FALSE FALSE 330476.2003 447826.4453 579786.6897 374867.3335 583437.8229 420743.4334 474187.7142 504602.1592 450006.9152 393151.228 0.840582902 1.139069176 1.474716721 0.953493991 1.484003562 1.070182168 1.206120395 1.283481071 1.144615311 1 18.58472484 -4.300131369 4.175993176 1.213800245 0.822494197 0.28508002 0.169192999 0.22098 7.949419224 0.038860623 0.234846062 5.01E-05 4.300131369 -0.391306048 SS(ph)RS(ph)SPELTRK ddPTM_HeLa_A486_30min_R1 1 SSRSSPELTRK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.117)S(0.883)RS(0.919)S(0.081)PELTRK 84.468 0.0020523 0 357960 301820 202330 157680 408240 296280 444240 443620 215390 459650 TRUE FALSE FALSE 332868.8525 277902.684 280677.5946 367087.0087 357034.7325 259727.986 333086.4533 342617.4102 234060.1786 344550.6482 0.966095563 0.806565553 0.814619262 1.065407976 1.036232944 0.753816565 0.966727113 0.994389104 0.679320094 1 18.39435655 -5.978172658 0.003738506 1.813542363 4.14E-08 0.004378068 0.125837442 299308.191 365.6437516 87577.20135 89789.76954 1.05E-06 5.978172658 -1.813542322 SS(ph)RSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.434)S(0.569)RS(0.13)S(0.867)PELTR 65.212 0.02191 478410000 189040 204270 199640 230760 270980 213070 283800 283520 202610 314550 TRUE FALSE FALSE 231091.2958 228157.5996 273495.1437 243365.8345 244000.2797 224226.0157 223163.8116 213986.2755 243271.9686 236138.4739 0.978626194 0.966202567 1.158198151 1.030606451 1.033293202 0.949553082 0.945054857 0.906189796 1.030208947 1 17.84927359 -6.254771765 21.39627052 0.959016537 1.036432639 0.249837253 0.057417456 98.36978574 315666.2373 0.019758396 0.019238661 5.56E-07 6.254771765 0.077416102 SS(ph)RSS(ph)PELTR ddPTM_HeLa_A486_30min_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.405)S(0.594)RS(0.001)S(0.999)PELTR 112.63 0.00068549 4135300000 168390 183990 144500 63999 205620 175450 192300 203110 158400 192230 TRUE FALSE FALSE 156586.7306 169409.9623 200454.2698 148992.9063 179829.2223 153804.7628 144184.5061 156866.2869 172130.2395 144094.3568 1.086695788 1.175687696 1.391131994 1.033995429 1.247996287 1.067389218 1.000625627 1.08863588 1.19456614 1 17.13665431 -6.279728561 23.8428185 1.071431984 1.189296481 0.245892418 0.10227618 684.8026866 892744.1368 0.03592348 0.031753082 5.25E-07 6.279728561 0.117864497 SS(ph)RSS(ph)PELTRK ddPTM_HeLa_A486_30min_R1 2 SSRSSPELTRK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.418)S(0.581)RS(0.087)S(0.826)PELT(0.086)RK;S(0.349)S(0.651)RS(0.286)S(0.642)PELT(0.073)RK ; 105.63 0.0026722 2969900000 4092900 3413900 2046000 1781190 4598300 3588900 5198100 5340900 2533000 5076000 TRUE FALSE FALSE 3806008.846 3143370.131 2838265.994 4146700.336 4021538.337 3146138.007 3897480.4 4124893.661 2752562.479 3804936.561 1.000281814 0.826129445 0.745943053 1.089821149 1.056926514 0.826856889 1.024322045 1.084089996 0.723418758 1 21.85944097 -5.259689505 24.99946557 0.975354227 0.854319246 0.151809892 0.124078014 287.7456862 4110828.569 0.033975907 0.055189622 5.50E-06 5.259689505 -0.121034982 SS(ph)RSSPELT(ph)RK ddPTM_HeLa_A485_30min_R1 2 SSRSSPELTRK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.209)S(0.79)RS(0.422)S(0.123)PELT(0.455)RK;S(0.191)S(0.807)RS(0.386)S(0.131)PELT(0.484)RK ; 63.614 0.018694 3015100000 2149300 3037900 1982130 2204400 3759100 3573500 5054400 6565200 2299300 3259800 TRUE FALSE FALSE 2627404.37 3393155.979 2715402.37 2324820.79 3384830.805 3760602.934 3974486.149 4955074.406 2760748.42 2447191.852 1.073640535 1.386550865 1.109599302 0.949995313 1.383148935 1.536701314 1.624100761 2.024800141 1.128129132 1 21.22269578 -5.970842223 5.604119128 1.530011617 1.146529254 0.220393134 0.282772433 0.230986595 20.62914825 0.087667389 0.097849894 1.07E-06 5.970842223 -0.383482363 SS(ph)S(ph)PAPADIAQTVQEDLR ddPTM_HeLa_A485_30min_R1 1 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 2 0 S(0.638)S(0.708)S(0.653)PAPADIAQTVQEDLR 115.34 0.00014636 71617000 69296 74067 69354 75306 93073 80507 86988 79868 68136 114230 TRUE FALSE FALSE 84710.65613 82728.49135 95010.93066 79419.7761 83806.32532 84722.22203 68402.30317 60280.24777 81810.27022 85754.56325 0.987826804 0.96471241 1.107940232 0.926128862 0.977281233 0.987961676 0.79765205 0.702939243 0.954004861 1 16.38792582 -6.750664087 24.71425959 0.83889398 0.992346236 0.321685296 0.088412218 179.1843596 410978.7017 0.033096634 0.025363868 1.78E-07 6.750664087 0.153452256 SS(ph)SDMDLQKK ddPTM_HeLa_A485_30min_R1 1 SSSDMDLQKK 10 1 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 S(0.139)S(0.465)S(0.396)DMDLQKK 53.252 0.025298 196120000 528860 428290 281520 626320 615430 586150 888160 1001600 353050 758450 TRUE FALSE FALSE 646503.0825 478374.7899 385665.963 660534.2757 554155.6283 616839.9076 698397.3604 755956.0296 423903.8966 569382.3732 1.135446253 0.840164382 0.677340889 1.160089084 0.973257435 1.083349146 1.226587603 1.327677261 0.744497752 1 19.11903831 -5.287304809 24.91478398 1.089885267 0.879901823 0.182286221 0.181408601 1075.588881 1036054.756 0.051082604 0.075798349 5.16E-06 5.287304809 -0.209983444 SS(ph)SEDKITVHFINR ddPTM_HeLa_A486_30min_R1 1 SSSEDKITVHFINR 14 1 P10109 P10109 FDX1 "Adrenodoxin, mitochondrial" 1 0 S(0.266)S(0.367)S(0.367)EDKITVHFINR 173.37 1.42E-12 73636000 90417 79725 46975 42936 91608 98923 113740 105630 82210 122010 TRUE FALSE FALSE 84079.23521 73407.30065 65164.97803 99957.17787 80117.67043 86718.88604 85281.04898 81580.35489 89336.02899 91457.90185 0.919321715 0.802634864 0.712513372 1.092931019 0.876005996 0.948183637 0.932462338 0.891998977 0.976799458 1 16.4808202 -5.249910027 24.99998784 0.950158138 0.810604482 0.456123772 0.073675623 707.8812215 1534951.174 0.019590108 0.033564098 5.62E-06 5.249910027 -0.139553656 SS(ph)SESLIFSGNQGR ddPTM_HeLa_A486_30min_R1 2 SSSESLIFSGNQGR 14 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 S(0.205)S(0.795)SESLIFSGNQGR;S(0.339)S(0.625)S(0.037)ESLIFSGNQGR ; 204.18 2.08E-22 0 147597 193795 170952 61939 217806 144771 171686 151191 150306 160107 TRUE FALSE FALSE 137251.2125 178437.9784 237149.1927 144197.1222 190486.7405 126910.6259 128728.3469 116768.1098 163334.6451 120015.1651 1.143615579 1.486795259 1.975993555 1.201490846 1.587188922 1.057454913 1.072600673 0.972944625 1.360950052 1 16.87285719 -6.266966033 24.91365954 1.089837237 1.491640678 0.40544366 0.233589717 446.8751196 2014466.374 0.08118253 0.073600016 5.41E-07 6.266966033 0.401803441 SS(ph)SPAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_A486_30min_R1 1 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.01)S(0.495)S(0.495)PAGETEGDREPQARPGEGTAPLPPPGQK 330.13 8.56E-128 3076000000 360490 444870 238470 135830 367890 352640 475250 438180 347800 447100 TRUE FALSE FALSE 335221.5126 409616.881 330811.9704 316219.1045 321745.8058 309134.8622 356337.4233 338415.9794 377947.584 335143.2499 1.00023352 1.222214325 0.987076334 0.943534159 0.960024723 0.922396206 1.063239148 1.009765166 1.127719518 1 18.35441835 -4.809841835 24.99989517 0.99786507 1.111224915 0.253610152 0.074910338 128.6236279 66433.6637 0.01947825 0.040547347 1.55E-05 4.809841835 0.113359845 SS(ph)SPATEQSWMENDFDELREEGFR ddPTM_HeLa_A486_30min_R1 1 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.063)S(0.464)S(0.464)PAT(0.01)EQSWMENDFDELREEGFR 84.404 0.0019378 124950000 1975.6 2984.3 2953.8 1848.4 2738.5 1622.8 3630.4 1940.4 3152.4 2766 TRUE FALSE FALSE 1837.120642 2747.813199 4097.590466 4303.168613 2395.011795 1422.595435 2722.035522 1498.613279 3425.65257 2073.375596 0.886052988 1.325284818 1.976289522 2.075440948 1.155126837 0.686125291 1.312852108 0.722789099 1.652210326 1 11.01776577 -5.974525383 24.82663114 1.055490129 1.582584471 0.253175713 0.402713308 285.6078963 278341.5148 0.128843688 0.146090116 1.06E-06 5.974525383 0.527094342 SS(ph)SPATEQSWMENDFDELREEGFRR ddPTM_HeLa_A485_30min_R1 1 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.143)S(0.748)S(0.108)PATEQSWMENDFDELREEGFRR 264.23 3.83E-62 1129300000 64962 69536 106010 62103 127540 113280 135170 145300 89076 106050 TRUE FALSE FALSE 79412.57278 77667.63032 145227.5104 65495.52964 114841.6698 119211.1656 106289.8253 109664.9472 106952.7361 79613.68671 0.997473878 0.975556258 1.82415256 0.822666709 1.442486519 1.497370246 1.335069756 1.377463495 1.34339635 1 16.28072885 SS(ph)SPELVTHLK ddPTM_HeLa_A485_30min_R1 2 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.088)S(0.574)S(0.338)PELVTHLK;S(0.132)S(0.585)S(0.283)PELVTHLK ; 269.93 1.46E-28 8595200000 7407000 6381800 5573300 9173700 9049000 6763100 9517800 7110100 7211200 12489600 TRUE FALSE FALSE 9054661.596 7128095.996 7635095.594 9674836.002 8148049.787 7117205.458 7484244.277 5366336.827 8658421.695 9376172.574 0.965709785 0.760235153 0.814308347 1.031853448 0.869016619 0.759073641 0.798219553 0.572337677 0.923449481 1 23.16056769 -6.187755463 5.992320131 0.783273606 0.885945395 0.066433672 0.126750467 0.494682351 31.50189076 0.041368075 0.041278508 6.49E-07 6.187755463 0.102671788 SS(ph)SPELVTHLK ddPTM_HeLa_A486_30min_R1 2 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.017)S(0.656)S(0.327)PELVTHLK;S(0.114)S(0.443)S(0.443)PELVTHLK ; 234.49 9.18E-22 3968150000 3426580 3792230 2210040 1236370 3555850 3897040 4363970 4192720 3300580 4119420 TRUE FALSE FALSE 3186394.437 3491719.884 3065826.675 2878331.843 3109842.136 3416262.827 3272058.549 3238129.182 3586676.932 3087890.419 1.031900102 1.130778431 0.992854752 0.932135358 1.007108969 1.106341989 1.059642055 1.048654176 1.161529862 1 21.55819013 -6.250489705 24.15626025 1.07730003 1.018894518 0.179577329 0.060064183 866.7167594 1912078.363 0.020974265 0.020783128 5.62E-07 6.250489705 -0.058405512 SS(ph)SPRGEASSLNGESH ddPTM_HeLa_A486_30min_R1 1 SSSPRGEASSLNGESH 16 1 Q8IY57;Q8IY57-5;Q8IY57-3 Q8IY57 YAF2 YY1-associated factor 2 1 0 S(0.019)S(0.554)S(0.423)PRGEAS(0.004)S(0.001)LNGESH 104.21 0.00099673 0 114450 117480 175940 33943 333460 131540 206830 252180 113790 82732 TRUE FALSE FALSE 106427.646 108170.4569 244068.6798 79021.01938 291634.3374 115311.9322 155078.9464 194764.1191 123653.4088 62015.36871 1.716149533 1.74425242 3.935616041 1.274216715 4.702613941 1.85940896 2.500653461 3.140578265 1.993915563 1 15.92033817 -4.587660556 24.99994845 2.645946552 1.722992327 0.078571537 1.08597948 110.9872107 42829.81121 0.253619408 0.671014093 2.58E-05 4.587660556 -0.922954225 SS(ph)SPVTELAS(ph)RSPIRQDR ddPTM_HeLa_A486_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.278)S(0.361)S(0.361)PVTELAS(0.536)RS(0.464)PIRQDR 165.47 2.76E-12 996640000 84678 120250 110120 49226 152390 89434 141760 149850 80041 112140 TRUE FALSE FALSE 78742.50948 110720.9521 152761.4131 114600.6157 133275.8252 78400.54238 106290.1486 115732.4262 86979.01833 84059.41409 0.936748255 1.31717492 1.817302854 1.363328748 1.585495529 0.932680096 1.264464543 1.376793158 1.034732627 1 16.35912178 -6.254015911 24.99837048 1.154204309 1.419886519 0.248913605 0.241115269 944.2481163 3179736.89 0.082972778 0.081358842 5.57E-07 6.254015911 0.26568221 SS(ph)SPVTELASRS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.131)S(0.487)S(0.382)PVT(0.001)ELAS(0.145)RS(0.854)PIR 137.26 2.91E-05 100300000 199910 235020 251230 266350 335650 231170 280670 299320 241160 376220 TRUE FALSE FALSE 244379.2898 262503.5446 344170.4316 280900.0261 302231.5075 243273.7037 220702.5616 225911.3007 289558.5999 282435.2778 0.865257668 0.929429024 1.218581596 0.994564235 1.070091207 0.861343192 0.781427035 0.799869274 1.025221078 1 18.10756078 -6.270627496 23.97687365 0.874054864 1.020908114 0.215890537 0.113022865 528.1071215 1378118.173 0.040664889 0.036402163 5.36E-07 6.270627496 0.146853249 SS(ph)SPVTELASRS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.142)S(0.762)S(0.096)PVTELAS(0.003)RS(0.997)PIR 209.25 1.25E-25 968330000 662830 906940 739670 256430 1018000 830280 955330 945430 742350 846870 TRUE FALSE FALSE 616369.0399 835070.7714 1026090.033 596981.9993 890312.9475 727848.4953 716296.3295 730176.2276 806697.4957 634808.2398 0.970953118 1.315469332 1.616377937 0.940413123 1.402491165 1.146564348 1.128366465 1.150231175 1.270773511 1 19.27596133 -6.415421768 17.17253901 1.147715838 1.25793882 0.073178368 0.193188586 8.03737916 1266.150057 0.067154869 0.059224139 3.84E-07 6.415421768 0.110222983 SS(ph)SPVTELASRS(ph)PIRQDR ddPTM_HeLa_A485_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.259)S(0.37)S(0.37)PVTELAS(0.057)RS(0.943)PIRQDR 221.21 1.35E-34 957880000 58945 94050 89651 64693 132450 106630 122490 158920 81550 90507 TRUE FALSE FALSE 72057.11189 105048.3294 122816.6356 68227.01478 119262.8129 112212.9819 96319.01085 119944.6208 97916.33698 67945.27056 1.060516962 1.546072722 1.807581817 1.004146635 1.755277622 1.651520128 1.417596987 1.765312285 1.441105999 1 16.05208551 -8.034819558 22.6440241 0.99999999 1.512896541 0.240213754 0.264985777 2161.069633 1405396.945 0.24687518 0.063742897 9.23E-09 8.034819558 0.512896551 SS(ph)SPVTELASRS(ph)PIRQDR ddPTM_HeLa_A486_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.277)S(0.361)S(0.361)PVTELAS(0.407)RS(0.593)PIRQDR 163.15 3.26E-12 1091800000 147830 134890 161730 73450 272900 159950 234080 242500 127270 162380 TRUE FALSE FALSE 137467.8804 124200.8251 224356.1873 170995.312 238670.3373 140216.9953 175510.7082 187288.0437 138301.8661 121718.9911 1.129387281 1.020389867 1.84323075 1.404836751 1.960830723 1.151973032 1.441933642 1.538692049 1.136239011 1 16.89319476 -7.908249326 4.497562095 1.004280327 1.442413315 0.218502601 0.283239446 0.297798577 9.895478505 0.27567865 0.072304041 1.24E-08 7.908249326 0.438132988 SS(ph)SPYSKS(ph)PVSK ddPTM_HeLa_A485_30min_R1 1 SSSPYSKSPVSK 12 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.359)S(0.463)S(0.178)PY(0.003)S(0.219)KS(0.769)PVS(0.009)K 67.707 0.015058 151690000 438200 309710 190580 647410 407730 453940 647720 521290 291490 903370 TRUE FALSE FALSE 535676.0782 345927.8904 261083.4727 682776.369 367134.9696 477707.5965 509329.3306 393442.8101 349989.3693 678176.4843 0.789877105 0.510085352 0.384978658 1.006782725 0.54135609 0.704400119 0.751027708 0.580148117 0.516074174 1 19.37130123 -10.14518778 3.743903614 1.000220401 0.642146144 0.287985607 0.168519057 2238336179 4024632881 6140638.814 0.041363591 7.16E-11 10.14518778 -0.358074256 SS(ph)SQGPLSSIR ddPTM_HeLa_A485_30min_R1 1 SSSQGPLSSIR 11 0 A0A0U1RQE4 A0A0U1RQE4 1 0 S(0.018)S(0.491)S(0.491)QGPLSSIR 194.86 2.54E-11 421230000 343950 457780 434280 389610 565910 431210 557710 584780 401790 523260 TRUE FALSE FALSE 420460.4909 511313.3888 594938.2439 410893.4078 509566.0134 453787.4888 438550.7024 441361.7881 482425.5676 392820.9119 1.070361781 1.301645033 1.514527933 1.04600696 1.297196758 1.155201964 1.116413839 1.12356999 1.228105615 1 18.58351221 -6.219982884 1.101756582 1.121158407 1.268691467 0.164716077 0.133288371 0.927781509 2.35246082 0.070254277 0.065952416 6.03E-07 6.219982884 0.14753306 SS(ph)SSERPEPQQK ddPTM_HeLa_A486_30min_R1 1 SSSSERPEPQQK 12 1 P78362;C9J2M4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 S(0.013)S(0.551)S(0.423)S(0.013)ERPEPQQK 94.09 0.00084009 298470000 177790 162840 75107 43458 156230 197190 227790 238660 134710 191260 TRUE FALSE FALSE 165327.8391 149935.9653 104190.4418 101172.4202 136634.1766 172862.7027 170794.5327 184322.3279 146386.7713 143367.2511 1.153177157 1.045817397 0.726738087 0.705687104 0.953036175 1.205733536 1.191307857 1.285665495 1.021061436 1 17.12935599 -6.169677501 4.977404577 1.161268357 0.897275422 0.361005389 0.147770509 0.242824707 9.923720346 0.053222411 0.053142767 6.77E-07 6.169677501 -0.263992936 SS(ph)SSPELQTLQDILGDPGDKADVGRLS(ph)PEVK ddPTM_HeLa_A486_30min_R1 2 SSSSPELQTLQDILGDPGDKADVGRLSPEVK 31 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 2 0 S(0.222)S(0.259)S(0.259)S(0.259)PELQTLQDILGDPGDKADVGRLS(1)PEVK;S(0.294)S(0.351)S(0.351)S(0.004)PELQTLQDILGDPGDKADVGRLS(1)PEVK ; 198.44 4.04E-29 626080000 126451 115165 47202 100953 96580 144618 221620 199803 95260 268490 TRUE FALSE FALSE 117587.4379 106038.906 65479.87851 235023.6859 84466.03583 126776.5015 166168.3319 154312.2186 103517.2135 201258.3564 0.584261146 0.526879519 0.325352346 1.167771068 0.419689584 0.629919193 0.82564687 0.766736951 0.51434989 1 17.61868916 -14 0.092786059 2.044877741 0.388289363 0.192266651 0.224684619 353.343538 2.261066708 74.07892641 4.788836845 1.00E-14 14 -1.656588378 SS(ph)SVPHPFQVTLLR ddPTM_HeLa_A485_30min_R1 2 SSSVPHPFQVTLLR 14 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 S(0.232)S(0.767)S(0.001)VPHPFQVTLLR;S(0.225)S(0.764)S(0.011)VPHPFQVTLLR ; 122.19 3.45E-05 302811000 281426 314240 257839 260998 385660 248779 378640 373170 245041 392170 TRUE FALSE FALSE 344028.2428 350987.6345 353224.3757 275255.6599 347262.3363 261804.6838 297740.4708 281649.4724 294218.4811 294409.2364 1.168537533 1.19217603 1.199773418 0.934942338 1.17952256 0.889254315 1.011314979 0.95665977 0.999352074 1 18.16746341 -5.328499135 1.099378029 0.982485353 1.205387458 0.519014399 0.078379922 0.430807241 1.003763806 0.028291175 0.07252408 4.69E-06 5.328499135 0.222902106 SS(ph)SVPHPFQVTLLR ddPTM_HeLa_A486_30min_R1 2 SSSVPHPFQVTLLR 14 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 S(0.028)S(0.712)S(0.26)VPHPFQVTLLR;S(0.137)S(0.842)S(0.02)VPHPFQVTLLR ; 114.21 0.00019958 479610000 282990 380730 253520 124753 374900 300150 399560 416540 288510 360100 TRUE FALSE FALSE 263153.8624 350559.5682 351689.7335 290431.2887 327876.5462 263120.5447 299585.8619 321702.935 313518.2791 269928.6161 0.974901684 1.298712131 1.302899035 1.075955906 1.214678721 0.974778252 1.109870699 1.191807447 1.161485891 1 18.0422184 -5.292405567 24.68578257 1.111536076 1.202825149 0.112215466 0.110971537 1203.550703 959449.3589 0.031115044 0.046156612 5.10E-06 5.292405567 0.091289073 SS(ph)SVTS(ph)IDKESR ddPTM_HeLa_A485_30min_R1 1 SSSVTSIDKESR 12 1 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 2 0 S(0.272)S(0.357)S(0.356)VT(0.276)S(0.739)IDKESR 92.8 0.0020618 959830000 815280 678890 541230 1201800 953930 928340 1572100 1437800 774030 2050100 TRUE FALSE FALSE 996636.2233 758280.2799 741453.4995 1267451.291 858953.3797 976946.4469 1236207.992 1085177.296 929370.7212 1539047.799 0.647566777 0.492694431 0.48176119 0.823529517 0.558107019 0.634773298 0.803229109 0.705096551 0.603860856 1 20.55360661 -14 0.128231285 2.189827354 0.48630737 0.534826567 0.104933123 115.3649532 0.936560197 35.36245497 0.846076788 1.00E-14 14 -1.703519984 SS(ph)T(ph)PRES(ph)PCGK ddPTM_HeLa_A485_30min_R1 1 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 3 0 S(0.422)S(0.582)T(0.997)PRES(1)PCGK 97.463 0.0023038 0 473780 463280 330520 812440 645450 448420 755200 672400 421220 1000100 TRUE FALSE FALSE 579170.7265 517456.566 452793.1021 856821.54 581186.7317 471898.5778 593845.3506 507492.8457 505754.9903 750793.4755 0.771411507 0.689212923 0.603086091 1.141221345 0.774096673 0.628533136 0.790956994 0.675942003 0.673627311 1 19.51805659 -6.007508788 24.98729448 0.732039278 0.801400747 0.009972658 0.161505057 1488.207095 4952381.771 0.051756762 0.056311297 9.83E-07 6.007508788 0.069361469 SS(ph)T(ph)PRES(ph)PCGK ddPTM_HeLa_A486_30min_R1 1 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 3 0 S(0.141)S(0.859)T(1)PRES(1)PCGK 126.09 0.00035081 270360000 656230 752020 316910 420290 653990 770000 1046800 964210 568390 1134400 TRUE FALSE FALSE 610231.6658 692427.1964 439626.0391 978456.3603 571960.476 675005.2288 784879.5681 744680.4316 617658.5028 850338.8563 0.717633519 0.814295608 0.517001 1.150666411 0.672626532 0.793807344 0.923019761 0.875745506 0.726367493 1 19.69767834 -11.9035202 0.029129799 2.000234796 7.25E-06 0.144272316 0.157244463 2104.640541 6.802708475 312.8709044 171.9866092 1.25E-12 11.9035202 -2.000227548 SS(ph)T(ph)PRESPCGK ddPTM_HeLa_A486_30min_R1 1 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 S(0.295)S(0.634)T(0.869)PRES(0.203)PCGK 95.98 0.032575 322730000 918500 944260 528980 542560 982440 1116100 1420700 1373400 721430 1287000 TRUE FALSE FALSE 854117.8931 869433.3987 733815.2226 1263107.099 859213.2143 978406.9297 1065225.833 1060706.801 783964.1333 964726.823 0.885346891 0.901222375 0.76064561 1.309289914 0.890628511 1.014180291 1.104173542 1.099489281 0.812628108 1 19.87976095 SS(ph)TDFSELEQPR ddPTM_HeLa_A486_30min_R1 1 SSTDFSELEQPR 12 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(0.006)S(0.993)TDFSELEQPR 344.98 1.04E-86 571290000 509770 595010 493670 203480 711810 542050 628100 635400 439540 540800 TRUE FALSE FALSE 474037.7555 547859.2406 684832.2449 473711.7233 622528.1524 475177.3822 470942.7366 490733.2907 477639.6811 405380.16 1.169365949 1.351470286 1.689358071 1.168561686 1.535665072 1.172177203 1.161731094 1.210550834 1.178251252 1 18.62891596 -6.365324355 8.055397333 1.157249301 1.385996777 0.372574689 0.154254936 0.348283261 24.27796284 0.053359957 0.04699189 4.31E-07 6.365324355 0.228747476 SS(ph)TDS(ph)LPGPISR ddPTM_HeLa_A486_30min_R1 1 SSTDSLPGPISR 12 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 2 0 S(0.435)S(0.562)T(0.006)DS(0.997)LPGPISR 70.373 0.0059515 0 213860 230140 188120 143500 245450 230530 274540 273050 209260 299540 TRUE FALSE FALSE 198869.5184 211902.8682 260965.102 334075.2521 214663.3723 202089.5525 205847.1882 210882.4756 227398.8253 224533.2343 0.885701927 0.943748345 1.162256014 1.487865496 0.956042757 0.90004294 0.916778262 0.939203839 1.012762436 1 17.77656948 -5.951989893 24.99992457 0.945465371 1.124289197 0.21906567 0.152832053 187.7430526 97761.0276 0.051588801 0.058496187 1.12E-06 5.951989893 0.178823826 SS(ph)TDSLPGPISR ddPTM_HeLa_A485_30min_R1 3 SSTDSLPGPISR 12 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 S(0.001)S(0.999)TDSLPGPISR;S(0.124)S(0.869)T(0.008)DSLPGPISR;S(0.207)S(0.791)T(0.002)DSLPGPISR ;; 275.44 1.12E-40 593160000 541440 821800 781100 724420 912130 706790 946240 1004440 799810 948100 TRUE FALSE FALSE 661881.4601 917902.3613 1070061.394 763993.2303 821315.1345 743796.4315 744068.0939 758099.5151 960324.5307 711756.1185 0.92992732 1.289630447 1.50341018 1.073391869 1.153927747 1.045015859 1.045397538 1.065111343 1.349232561 1 19.44102346 SS(ph)TDSLPGPISR ddPTM_HeLa_A486_30min_R1 3 SSTDSLPGPISR 12 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 SS(1)TDSLPGPISR;S(0.003)S(0.997)T(0.001)DSLPGPISR;S(0.047)S(0.952)TDSLPGPISR ;; 283.95 4.39E-41 503540000 1185550 1421500 1033400 455042 1410420 1174040 1363070 1408690 1153440 1412190 TRUE FALSE FALSE 1102449.067 1308855.163 1433560.155 1059360.773 1233511.972 1029198.882 1022015.469 1087962.038 1253421.108 1058568.432 1.041452809 1.236438876 1.354244196 1.000748502 1.165264271 0.972255407 0.965469438 1.027767318 1.184071875 1 20.01368311 -5.284209369 24.98033057 1.044895279 1.213284678 0.366291483 0.099816651 815.2435698 894379.409 0.028570616 0.042406523 5.20E-06 5.284209369 0.168389398 SS(ph)TPEEVK ddPTM_HeLa_A486_30min_R1 1 SSTPEEVK 8 0 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 S(0.004)S(0.498)T(0.498)PEEVK 134.51 0.00049695 934130000 2013900 1939700 875270 1115900 1702100 2431700 2911700 2790800 1580200 3221500 TRUE FALSE FALSE 1872736.01 1785991.108 1214197.985 2597871.594 1488606.747 2131701.578 2183161.863 2155395.763 1717173.008 2414815.432 0.775519315 0.739597356 0.50281192 1.075805447 0.616447422 0.88275963 0.904069866 0.892571637 0.71109907 1 21.20348149 -5.252752127 24.99928474 0.856004493 0.679338336 0.289066519 0.139942545 891.8621469 2566504.944 0.036643496 0.062240627 5.59E-06 5.252752127 -0.176666157 SS(ph)TPGLK ddPTM_HeLa_A485_30min_R1 1 SSTPGLK 7 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 S(0.133)S(0.803)T(0.063)PGLK 122.44 0.0018409 986910000 4333100 3637900 2681800 5712700 4660300 4015200 5874800 5278700 3209200 7334700 TRUE FALSE FALSE 5296983.146 4063320.759 3673909.419 6024770.336 4196304.169 4225429.663 4619600.987 3984090.548 3853257.003 5506294.275 0.961986934 0.737941083 0.667219955 1.094160616 0.762092246 0.767381737 0.838967327 0.723552057 0.699791332 1 22.39265028 SS(ph)TPGLK ddPTM_HeLa_A486_30min_R1 2 SSTPGLK 7 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 S(0.016)S(0.492)T(0.492)PGLK;S(0.019)S(0.491)T(0.491)PGLK ; 131.22 0.0016634 3199300000 15374500 14913400 6915000 5795500 12886400 15526000 18902600 17007300 10744300 19793900 TRUE FALSE FALSE 14296826.94 13731607.87 9592673.19 13492216.89 11270067.55 13610559.98 14172969.55 13135109.06 11675624.57 14837378.6 0.963568251 0.925473983 0.646520753 0.909339665 0.759572688 0.917315676 0.95522059 0.885271543 0.786906157 1 23.82273289 SS(ph)TPLHS(ph)PSPIR ddPTM_HeLa_A485_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.273)S(0.363)T(0.363)PLHS(0.984)PS(0.016)PIR 119.45 0.00014347 2002500000 1013800 1403200 1353400 1036700 1783600 1280500 1630000 1670000 1122800 1499400 TRUE FALSE FALSE 1239316.312 1567292.034 1854078.98 1093332.296 1606018.521 1347545 1281737.184 1260429.882 1348135.661 1125627.174 1.101000705 1.392372243 1.647151936 0.971309436 1.426776608 1.19715038 1.138687137 1.119757865 1.19767512 1 20.10229763 -7.011520281 0.491276128 1.028573762 1.345383175 0.213222303 0.176736599 1.436419779 0.777735621 0.178011399 0.14051198 9.74E-08 7.011520281 0.316809414 SS(ph)TPLHS(ph)PSPIR ddPTM_HeLa_A486_30min_R1 4 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.259)S(0.371)T(0.371)PLHS(0.999)PS(0.001)PIR;S(0.268)S(0.366)T(0.366)PLHS(1)PSPIR;S(0.247)S(0.376)T(0.377)PLHS(0.997)PS(0.003)PIR;S(0.301)S(0.35)T(0.348)PLHS(0.957)PS(0.043)PIR ;;; 153.2 8.46E-08 5096710000 4202010 5189880 4377930 1192010 5756630 4605550 5533780 5107940 4121380 5040360 TRUE FALSE FALSE 3907470.798 4778615.008 6073181.741 2775059.521 5034579.787 4037364.067 4149169.714 3944973.568 4478624.537 3778221.049 1.034209155 1.264779097 1.607418323 0.734488397 1.332526531 1.068588633 1.098180773 1.044135194 1.185379172 1 21.84927568 -5.25547256 24.99937903 1.080555303 1.29839984 0.238306631 0.192075211 762.7104779 3195543.097 0.050995162 0.085384652 5.55E-06 5.25547256 0.217844537 SS(ph)TPLHSPS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.268)S(0.366)T(0.366)PLHS(0.422)PS(0.578)PIR 110.84 0.00038494 1167500000 693830 936860 798620 786740 1249600 853100 1208000 1208600 837840 1109200 TRUE FALSE FALSE 848170.0898 1046417.627 1094062.771 829717.6141 1125185.436 897766.9969 949900.9315 912188.955 1005986.803 832696.8533 1.018582076 1.25666096 1.313878835 0.99642218 1.35125458 1.078143857 1.140752397 1.095463435 1.208106887 1 19.66743185 SS(ph)TPLPTISSSAENTR ddPTM_HeLa_A485_30min_R1 2 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 S(0.068)S(0.928)T(0.004)PLPTISSSAENTR;S(0.004)S(0.982)T(0.014)PLPTISSSAENTR ; 174.59 1.73E-12 333984000 189875 226595 166855 195082 238012 197638 219672 286453 184693 367490 TRUE FALSE FALSE 232112.0387 253093.3141 228581.6079 205738.8357 214314.6896 207986.0201 172737.2826 216199.9526 221759.191 275881.5062 0.841346859 0.917398624 0.828549949 0.745750734 0.776836014 0.753896203 0.626128533 0.783669611 0.80382043 1 18.07368922 -2.504450409 18.83063701 0.796233904 0.852194936 0 0.09651403 0 0 0.022523195 0 0.003130038 2.504450409 0.055961032 SS(ph)TPLPTISSSAENTR ddPTM_HeLa_A486_30min_R1 3 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 S(0.001)S(0.999)TPLPTISSSAENTR;S(0.003)S(0.997)TPLPTISSSAENTR;S(0.001)S(0.499)T(0.499)PLPTISSSAENTR ;; 228.8 3.50E-34 1714050000 1289530 1279080 890200 395916 1367700 1245200 1428720 1417630 1167290 1345370 TRUE FALSE FALSE 1199140.606 1177721.042 1234909.28 921712.4565 1196150.313 1091579.884 1071239.145 1094866.596 1268471.637 1008480.595 1.189056698 1.167817257 1.224524583 0.913961519 1.18609155 1.082400484 1.062230795 1.085659557 1.257804705 1 19.94375189 SS(ph)TPRES(ph)PCGK ddPTM_HeLa_A485_30min_R1 1 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 S(0.396)S(0.505)T(0.099)PRES(1)PCGK 82.543 0.0044608 0 187200 148490 131080 270870 269410 194210 301790 294080 167740 349240 TRUE FALSE FALSE 228841.9942 165854.6138 179571.9467 285666.9422 242586.5944 204378.5353 237310.1011 221956.4189 201403.8794 262180.8953 0.872840082 0.632596107 0.684916216 1.089579551 0.925264193 0.779532525 0.905138801 0.846577393 0.76818671 1 18.00020304 -5.198316026 24.99995557 0.891640831 0.720365114 0.34811279 0.106903158 251.8577723 99747.31555 0.029261761 0.05068285 6.33E-06 5.198316026 -0.171275717 SS(ph)TPTPR ddPTM_HeLa_A485_30min_R1 1 SSTPTPR 7 0 A0A669KBK8;Q04724;F6T2C8;A0A669KAE5 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 S(0.047)S(0.473)T(0.473)PT(0.006)PR 62.464 0.032587 3174900000 759820 892530 810700 823800 884620 739230 999850 1030900 929610 1061300 TRUE FALSE FALSE 928839.3377 996903.6195 1110611.666 868802.108 796544.1267 777934.9397 786223.8795 778070.1586 1116174.2 796737.4418 1.16580355 1.251232297 1.393949384 1.090449705 0.999757367 0.97640063 0.986804232 0.976570345 1.400931024 1 19.60374485 -5.422974001 6.451834516 1.047785354 1.26727573 0.350980858 0.130345859 0.263001864 14.3995973 0.037060122 0.055089822 3.78E-06 5.422974001 0.219490376 SS(ph)TPTPR ddPTM_HeLa_A486_30min_R1 1 SSTPTPR 7 0 A0A669KBK8;Q04724;F6T2C8;A0A669KAE5 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 S(0.02)S(0.487)T(0.487)PT(0.007)PR 62.464 0.032587 2815600000 1452300 1173300 1207900 478410 1254400 1379100 1387300 1334500 1462400 1516800 TRUE FALSE FALSE 1350501.27 1080323.435 1675631.229 1113762.658 1097061.455 1208960.664 1040182.867 1030663.482 1589162.009 1136983.407 1.187793297 0.950166403 1.473751699 0.979576879 0.964887832 1.063305459 0.914861958 0.906489466 1.397700265 1 20.11677977 SS(ph)TPVPSK ddPTM_HeLa_A486_30min_R1 1 SSTPVPSK 8 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 S(0.084)S(0.558)T(0.358)PVPSK 64.485 0.024876 260070000 874720 799900 495160 329350 773080 902510 958020 962470 640480 1011000 TRUE FALSE FALSE 813406.6451 736513.0108 686899.2128 766743.4444 676113.0977 791167.4922 718313.2631 743336.5916 695997.3221 757839.0195 1.073323785 0.971859448 0.906391985 1.011749758 0.892159259 1.043978301 0.947844126 0.980863445 0.918397317 1 19.5315319 -4.270034494 5.047777484 0.962177314 1.07802649 0.340238082 0.04591599 0.164844303 13.37973312 0.010581514 0.065894641 5.37E-05 4.270034494 0.115849176 SS(ph)VDLEESSTK ddPTM_HeLa_A485_30min_R1 1 SSVDLEESSTK 11 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 S(0.025)S(0.975)VDLEESSTK 181.44 1.90E-10 516600000 321710 316680 232580 478380 467190 363680 514740 464670 318300 594670 TRUE FALSE FALSE 393273.2796 353712.9713 318621.0205 504512.6881 420674.9232 382721.7224 404761.594 350708.9539 382179.8904 446429.7131 0.880929894 0.792315029 0.713709261 1.130105531 0.942309418 0.857294466 0.906663652 0.785586048 0.856080765 1 18.76807353 SS(ph)VDLEESSTK ddPTM_HeLa_A486_30min_R1 1 SSVDLEESSTK 11 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 S(0.177)S(0.823)VDLEESSTK 161.33 6.97E-07 0 564900 582520 324930 253600 504830 615330 692340 633980 449680 707240 TRUE FALSE FALSE 525303.4271 536358.9937 450751.5979 590393.6162 441509.514 539416.8408 519109.2092 489636.5937 488658.6245 530142.5006 0.990872127 1.011726079 0.850246108 1.113650793 0.832812901 1.017494051 0.979188065 0.923594304 0.921749575 1 19.01602068 SS(ph)VGPSKPVSQPR ddPTM_HeLa_A486_30min_R1 1 SSVGPSKPVSQPR 13 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 S(0.025)S(0.975)VGPSKPVSQPR 95.57 0.00056771 104070000 105350 129580 71864 105900 138100 173250 183180 174180 121590 224330 TRUE FALSE FALSE 97965.50903 119311.6089 99691.66538 246540.5519 120778.2103 151876.1765 137346.4265 134523.0163 132129.5191 168156.3079 0.58258599 0.709528 0.592851179 1.466139183 0.718249656 0.903184534 0.816778319 0.799987928 0.785754164 1 17.35944337 SSAQADS(ph)GS(ph)S(ph)DDEAASEAR ddPTM_HeLa_A485_30min_R1 2 SSAQADSGSSDDEAASEAR 19 0 F8WEI6;A0A0R4J2F6;Q12894;Q12894-2 F8WEI6 IFRD2 Interferon-related developmental regulator 2 3 0 SSAQADS(1)GS(1)S(1)DDEAASEAR;SSAQADS(1)GS(1)S(1)DDEAASEAR ; 270.74 6.56E-60 399090000 213160 319060 248780 306690 392030 293280 367630 426580 267930 369110 TRUE FALSE FALSE 260576.7066 356371.2915 340814.0746 323443.6981 352998.1167 308635.6873 289082.8472 321960.5861 321701.0934 277097.67 0.940378555 1.286085486 1.229942044 1.167255207 1.273912252 1.113815527 1.043252537 1.161902899 1.160966433 1 18.08003505 -6.489931885 23.42467758 1.10123831 1.18818659 0.144226006 0.100688992 580.3726756 412635.7135 0.034604669 0.030488181 3.24E-07 6.489931885 0.08694828 SSAQADS(ph)GS(ph)S(ph)DDEAASEAR ddPTM_HeLa_A486_30min_R1 2 SSAQADSGSSDDEAASEAR 19 0 F8WEI6;A0A0R4J2F6;Q12894;Q12894-2 F8WEI6 IFRD2 Interferon-related developmental regulator 2 3 0 SSAQADS(1)GS(1)S(1)DDEAASEAR;SSAQADS(1)GS(1)S(1)DDEAASEAR ; 274.91 1.69E-69 418310000 676770 757710 600930 359400 858950 733210 825850 861150 678130 900720 TRUE FALSE FALSE 629331.9178 697666.3001 833626.1895 836701.3631 751212.4816 642754.0049 619213.595 665084.9438 736910.8544 675173.8493 0.932103515 1.033313569 1.234683764 1.239238403 1.11262082 0.951982968 0.917117266 0.985057322 1.091438679 1 19.3648995 -6.249339321 21.22558077 0.983685229 1.120173199 0.292129901 0.093582169 133.0416188 233376.4164 0.034256318 0.033891734 5.63E-07 6.249339321 0.13648797 SSASSS(ph)PKRPSVER ddPTM_HeLa_A485_30min_R1 1 SSASSSPKRPSVER 14 2 S4R419;S4R3M9;O75764-2;O75764 S4R419 TCEA3 Transcription elongation factor A protein 3 1 0 SSAS(0.023)S(0.117)S(0.628)PKRPS(0.232)VER 96.773 0.00065536 438180000 264510 329140 217370 343280 459150 417510 632220 780430 287440 520490 TRUE FALSE FALSE 323349.337 367630.0599 297784.2085 362032.5172 413435.4138 439370.178 497141.0322 589028.3188 345126.5714 390741.4219 0.827527666 0.940852541 0.762100437 0.926527102 1.058079309 1.124452524 1.272301846 1.507463212 0.883260776 1 18.57585468 -5.935148217 1.744990951 1.200887033 0.851256715 0.418608746 0.161792059 0.313430081 1.950504345 0.059652222 0.069168378 1.16E-06 5.935148217 -0.349630318 SSASSSPKRPS(ph)VER ddPTM_HeLa_A486_30min_R1 3 SSASSSPKRPSVER 14 2 S4R419;S4R3M9;O75764-2;O75764 S4R419 TCEA3 Transcription elongation factor A protein 3 1 0 S(0.005)S(0.02)AS(0.109)S(0.109)S(0.095)PKRPS(0.662)VER;SSAS(0.004)S(0.067)S(0.315)PKRPS(0.614)VER;SSAS(0.032)S(0.159)S(0.12)PKRPS(0.689)VER ;; 123.92 2.23E-05 1005970000 990990 800880 523350 480070 1137050 990070 1376370 1330290 718690 1358370 TRUE FALSE FALSE 921526.7185 737415.352 726005.1358 1117627.221 994430.5864 867925.2297 1031987.668 1027412.007 780986.6279 1018225.31 0.905032225 0.724216285 0.713010302 1.097622707 0.97663118 0.852390154 1.013516024 1.009022263 0.767007675 1 19.9576254 -5.245828458 24.99590154 0.958338739 0.775099266 0.405312881 0.099117628 803.8668088 1287133.972 0.026711587 0.046046958 5.68E-06 5.245828458 -0.183239473 SSAT(ph)SGDIWPGLSAYDNS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SSATSGDIWPGLSAYDNSPR 20 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.191)S(0.22)AT(0.295)S(0.295)GDIWPGLS(0.008)AY(0.006)DNS(0.986)PR 78.324 0.0072073 15301000 22911 26143 19888 24948 29110 23362 28694 22493 22716 29401 TRUE FALSE FALSE 28007.47291 29200.19644 27245.39881 26310.84607 26211.70619 24585.1982 22563.29249 16976.55648 27274.89284 22071.87179 1.268921512 1.32295968 1.234394576 1.192053231 1.187561546 1.113870107 1.022264569 0.769148926 1.235730848 1 14.42992136 -6.244806754 1.168589799 0.986481262 1.271277054 0.512126114 0.109225428 0.362014606 1.021441264 0.054420372 0.04978931 5.69E-07 6.244806754 0.284795792 SSATIQNET(ph)PK ddPTM_HeLa_A485_30min_R1 4 SSATIQNETPK 11 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 0 SSATIQNET(1)PK;SSATIQNET(1)PK;SSATIQNET(1)PK;SSATIQNET(1)PK ;;; 184.32 5.04E-10 365480000 772190 657560 465880 1291210 809690 722570 1187920 1005790 525290 1609610 TRUE FALSE FALSE 943961.0015 734455.922 638228.3989 1361745.533 729074.4206 760402.6479 934111.1876 759118.4255 630710.8848 1208363.85 0.781189376 0.60781024 0.528175681 1.12693336 0.603356697 0.629282851 0.773038012 0.628220073 0.521954447 1 20.2046235 -10.1601646 4.90204724 1.000023601 0.691079386 0.235696942 0.168031456 4.31E-05 7.38E-06 0.161626507 0.039197195 6.92E-11 10.1601646 -0.308944215 SSATIQNET(ph)PK ddPTM_HeLa_A486_30min_R1 2 SSATIQNETPK 11 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 0 SSATIQNET(1)PK;SSATIQNET(1)PK ; 242.91 3.23E-21 557590000 414510 340140 143740 237570 285640 426390 556370 490270 283270 712670 TRUE FALSE FALSE 385454.9895 313186.0676 199399.9775 553074.9661 249812.3677 373786.337 417160.3413 378646.2235 307824.0717 534212.7933 0.721538298 0.586257146 0.373259458 1.035308351 0.467627078 0.699695593 0.780887966 0.708792879 0.576219955 1 19.027055 -14 0.261438409 3.177879983 0.635692913 0.25361536 0.172414613 276.561426 2.717357883 324.0455915 0.22157569 1.00E-14 14 -2.54218707 SSATLWNS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 SSATLWNSPSR 11 0 Q3KQU3-4;Q3KQU3;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSATLWNS(0.735)PS(0.265)R;SSATLWNS(0.999)PS(0.001)R ; 195.87 1.30E-11 902560000 898880 1108420 960540 891040 1378730 964450 1185260 1329800 894790 1228230 TRUE FALSE FALSE 1098832.755 1238040.077 1315883.717 939715.259 1241458.8 1014947.111 932019.5183 1003664.465 1074366.145 922054.8649 1.191721661 1.342696757 1.427120844 1.019153301 1.346404479 1.100744814 1.010807007 1.088508399 1.165186787 1 19.81449307 -6.046182016 0.98043589 1.066389903 1.299250393 0.38897606 0.114877014 0.568985625 1.179909203 0.060440861 0.06873437 8.99E-07 6.046182016 0.23286049 SSATLWNS(ph)PSR ddPTM_HeLa_A486_30min_R1 4 SSATLWNSPSR 11 0 Q3KQU3-4;Q3KQU3;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSATLWNS(0.965)PS(0.035)R;SSATLWNS(0.966)PS(0.034)R;SSATLWNS(0.736)PS(0.264)R;SSATLWNS(0.998)PS(0.002)R ;;; 187.47 1.16E-10 1525290000 1088470 1061620 893330 401333 1207120 891130 1126070 1102790 965390 1116770 TRUE FALSE FALSE 1012173.874 977493.3648 1239251.3 934323.5062 1055711.754 781191.4409 844315.3756 851708.7907 1049070.782 837123.523 1.209109344 1.167681158 1.480368507 1.116111877 1.261118251 0.93318539 1.008591149 1.017423077 1.253185168 1 19.67508099 -6.243756273 24.49719331 1.041448037 1.248184963 0.42820519 0.118091352 627.1260913 868785.7408 0.038945061 0.038855379 5.70E-07 6.243756273 0.206736927 SSATS(ph)GDIWPGLSAYDNS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SSATSGDIWPGLSAYDNSPR 20 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.202)S(0.222)AT(0.273)S(0.303)GDIWPGLS(0.041)AY(0.151)DNS(0.808)PR 65.784 0.018021 26589000 27022 27815 28523 33801 32980 27614 32565 25256 24580 31364 TRUE FALSE FALSE 33032.95068 31067.72229 39074.84464 35647.46304 29696.3954 29059.82634 25607.22172 19061.9264 29512.98054 23545.53201 1.402939235 1.319474212 1.659543926 1.513979936 1.261232721 1.234197058 1.087561823 0.809577222 1.253442926 1 14.5231657 -6.333776942 1.453859109 1.018842587 1.47014233 0.662058927 0.136171909 0.245585763 1.041427598 0.064833954 0.055357688 4.64E-07 6.333776942 0.451299743 SSATS(ph)GDIWPGLSAYDNS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SSATSGDIWPGLSAYDNSPR 20 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.169)S(0.201)AT(0.287)S(0.344)GDIWPGLS(0.021)AY(0.019)DNS(0.96)PR 104.86 8.09E-05 33823000 33586 36855 23427 10769 30218 31764 32243 29921 29434 33395 TRUE FALSE FALSE 31231.79484 33934.47558 32498.5618 25070.77624 26427.77667 27845.28063 24175.46037 23108.64147 31985.36282 25032.67464 1.247641145 1.355607264 1.298245684 1.001522075 1.055731241 1.11235739 0.965756185 0.923139129 1.277744519 1 14.61152482 -5.254371708 24.09508623 1.044405647 1.306008998 0.598088045 0.094774455 218.7770586 745850.5283 0.025246496 0.042521387 5.57E-06 5.254371708 0.261603351 SSATSGDIWPGLSAYDNS(ph)PR ddPTM_HeLa_A485_30min_R1 9 SSATSGDIWPGLSAYDNSPR 20 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLS(0.053)AY(0.006)DNS(0.941)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLS(0.001)AYDNS(0.999)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR ;;;;;;;; 345.66 1.56E-127 29472150000 2113860 2727010 2293980 1957610 2140700 2025850 2323490 2102630 1933760 2352210 TRUE FALSE FALSE 2584080.864 3045910.098 3142618.662 2064549.277 1927564.392 2131920.373 1827057.38 1586956.696 2321847.895 1765847.336 1.46336595 1.724900016 1.779666112 1.16915502 1.091580428 1.207307296 1.034663271 0.898694164 1.314863322 1 20.75192919 -5.333510051 5.292421064 1.094140221 1.66196593 0.789405741 0.131262756 0.090411519 4.711338816 0.037025575 0.056021312 4.64E-06 5.333510051 0.567825709 SSATSGDIWPGLSAYDNS(ph)PR ddPTM_HeLa_A486_30min_R1 8 SSATSGDIWPGLSAYDNSPR 20 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR ;;;;;;; 331.13 4.89E-114 20940050000 3798590 3823190 2339670 945091 2587610 2751760 2842120 2703180 2922550 3949870 TRUE FALSE FALSE 3532328.457 3520226.501 3245652.883 2200219.61 2263047.825 2412275.829 2130991.515 2087724.924 3175878.987 2960796.843 1.19303304 1.188945641 1.096209249 0.743117386 0.764337422 0.81473872 0.71973581 0.705122653 1.072643331 1 21.49755407 -5.13642079 4.084678183 0.81142493 1.181722118 0.632806179 0.114901392 0.134903437 3.800640536 0.031057999 0.056896985 7.30E-06 5.13642079 0.370297188 SSAWAEGGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SSAWAEGGSPR 11 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 SSAWAEGGS(1)PR;SSAWAEGGS(1)PR ; 117.03 0.00029534 659040000 363860 435320 408840 395140 558670 424450 525150 538370 409160 549140 TRUE FALSE FALSE 444799.4017 486226.8872 560086.9293 416725.4977 503046.8532 446673.5457 412947.4124 406333.9134 491274.659 412249.5042 1.07895679 1.179448083 1.358611529 1.010857487 1.220248534 1.08350293 1.001692927 0.98565046 1.191692541 1 18.65315823 -6.44935028 5.160624322 1.0431786 1.171264571 0.259743981 0.100423867 0.305676703 14.91983292 0.036039452 0.031174512 3.55E-07 6.44935028 0.128085971 SSAWAEGGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SSAWAEGGSPR 11 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 SSAWAEGGS(1)PR;SSAWAEGGS(1)PR ; 170.63 3.34E-08 559760000 542800 627680 461540 191155 663520 533590 607850 573480 515990 604940 TRUE FALSE FALSE 504752.523 577940.3508 640260.6485 445018.5004 580295.1345 467761.0909 455759.5008 442911.123 560716.4287 453459.0865 1.113115908 1.274514875 1.411947996 0.981386224 1.27970781 1.03153979 1.005073036 0.976738886 1.236531465 1 18.79061286 -5.881093201 1.212717441 1.049247351 1.244671225 0.253764432 0.128765917 0.614026238 1.905954084 0.054695691 0.070329377 1.31E-06 5.881093201 0.195423874 SSCNYNHHLDVVDNLTLMVEHTDIPEAS(ph)PASTPQIIK ddPTM_HeLa_A485_30min_R1 1 SSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQIIK 37 0 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 0 S(0.003)S(0.003)CNYNHHLDVVDNLT(0.003)LMVEHT(0.003)DIPEAS(0.969)PAS(0.009)T(0.01)PQIIK 74.258 0.00029327 54016000 16514 23824 18759 17087 26585 25892 32298 36212 17093 28371 TRUE FALSE FALSE 20187.48233 26610.00956 25698.73473 18020.41954 23938.10405 27247.66508 25397.26845 27330.95022 20523.40831 21298.63183 0.947830006 1.249376475 1.206590871 0.846083433 1.123926844 1.279315277 1.192436615 1.283225629 0.963602192 1 14.37847314 -5.997883775 24.99457546 1.16859132 1.073476276 0.050602827 0.145797071 186.5642939 2203436.421 0.045532583 0.051301783 1.00E-06 5.997883775 -0.095115045 SSCS(ph)TPLSQANR ddPTM_HeLa_A486_30min_R1 1 SSCSTPLSQANR 12 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.001)S(0.058)CS(0.55)T(0.391)PLSQANR 120.87 0.00010914 314930000 650110 757510 578790 225170 848190 648230 710130 743580 635260 651130 TRUE FALSE FALSE 604540.6462 697482.1488 802912.9885 524207.1395 741802.1011 568257.9733 532447.963 574283.0662 690324.8483 488082.8099 1.238602618 1.429024204 1.645034351 1.074012706 1.51982837 1.164265493 1.090896775 1.1766099 1.414360093 1 18.89676642 -6.287775601 23.74778503 1.175368907 1.381532115 0.271663802 0.173477156 579.7608933 522776.8714 0.060046331 0.0529771 5.15E-07 6.287775601 0.206163207 SSCST(ph)PLSQANR ddPTM_HeLa_A485_30min_R1 2 SSCSTPLSQANR 12 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 SSCS(0.022)T(0.978)PLSQANR;S(0.003)S(0.002)CS(0.217)T(0.779)PLSQANR ; 149.69 6.57E-07 412440000 557280 667940 659970 600890 839940 655950 777310 752390 592370 753460 TRUE FALSE FALSE 681245.0134 746049.7727 904120.3666 633715.0992 756312.6244 690294.5277 611231.3685 567865.1728 711253.2255 565636.2884 1.204387037 1.318956701 1.598412947 1.120357926 1.337100607 1.220385859 1.080608478 1.00394049 1.257439171 1 19.10951515 -6.554910678 2.53721985 1.084351595 1.321975795 0.400337927 0.132426879 0.299150808 3.897878454 0.056240951 0.043114889 2.79E-07 6.554910678 0.237624199 SSDEENGPPSS(ph)PDLDR ddPTM_HeLa_A485_30min_R1 4 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 SSDEENGPPSS(1)PDLDR;SSDEENGPPS(0.002)S(0.998)PDLDR;SSDEENGPPS(0.008)S(0.992)PDLDR;SSDEENGPPS(0.018)S(0.982)PDLDR ;;; 400.04 5.00E-136 3293010000 1845310 2344490 2250850 1899350 2860530 2286550 2834730 3173110 2245380 2592620 TRUE FALSE FALSE 2255792.843 2618657.711 3083533.081 2003106.681 2575725.589 2406270.222 2229066.778 2394899.797 2696007.17 1946327.548 1.158999597 1.345435261 1.584282709 1.029172445 1.323377246 1.236313089 1.145268062 1.230471099 1.385176495 1 20.89232309 -5.271837763 24.99516714 1.207698546 1.361158808 0.215067426 0.146977916 1151.359228 2767582.573 0.040608542 0.060981529 5.35E-06 5.271837763 0.153460263 SSDEENGPPSS(ph)PDLDR ddPTM_HeLa_A486_30min_R1 4 SSDEENGPPSSPDLDR 16 0 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 1 0 SSDEENGPPSS(1)PDLDR;SSDEENGPPS(0.001)S(0.999)PDLDR;SSDEENGPPSS(1)PDLDR;SSDEENGPPS(0.005)S(0.995)PDLDR ;;; 396.92 4.02E-135 3781860000 3948520 4085970 3327920 1301540 4826590 3968660 4172830 4481810 3432840 4168030 TRUE FALSE FALSE 3671749.138 3762182.856 4616579.749 3030050.896 4221194.076 3479047.08 3128743.798 3461399.7 3730401.335 3124328.159 1.175212382 1.204157395 1.477623193 0.969824789 1.35107257 1.113534463 1.001413309 1.107886088 1.193985121 1 21.57511456 -6.497727716 22.33633116 1.080906243 1.232494251 0.253355972 0.131760443 287.0042676 254885.6902 0.045186839 0.039611262 3.18E-07 6.497727716 0.151588007 SSDELDAWTDFRS(ph)R ddPTM_HeLa_A485_30min_R1 1 SSDELDAWTDFRSR 14 1 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 0 SSDELDAWT(0.021)DFRS(0.979)R 74.786 0.0038058 19844000 14442 19823 19268 15314 27222 22724 28998 33943 20955 22866 TRUE FALSE FALSE 17654.57308 22141.12741 26396.03501 16150.56504 24511.6821 23913.7935 22802.34041 25618.42603 25160.47629 17165.92702 1.028466045 1.289829986 1.537699361 0.940850152 1.427926501 1.393096538 1.328348908 1.492399799 1.465721966 1 14.06726015 SSDGS(ph)LSHEEDLAK ddPTM_HeLa_A485_30min_R1 1 SSDGSLSHEEDLAK 14 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 S(0.016)S(0.016)DGS(0.868)LS(0.101)HEEDLAK 128.9 4.28E-05 0 91181 81390 74476 105830 143760 102630 161270 152300 96753 164570 TRUE FALSE FALSE 111463.8989 90907.8525 102027.7716 111611.2249 129446.7496 108003.5481 126813.347 114948.1862 116170.4396 123545.7277 0.902207636 0.735823522 0.825830027 0.903400118 1.047763869 0.874198972 1.026448663 0.930410046 0.940303172 1 16.9146856 -5.395201159 3.416029677 0.965078058 0.812309049 0.543398017 0.060452049 0.175150454 3.761050841 0.016727124 0.025893154 4.03E-06 5.395201159 -0.152769009 SSDKPIRT(ph)PSR ddPTM_HeLa_A485_30min_R1 4 SSDKPIRTPSR 11 2 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 S(0.003)S(0.003)DKPIRT(0.901)PS(0.092)R;SSDKPIRT(0.883)PS(0.116)R;SSDKPIRT(0.717)PS(0.283)R;S(0.001)S(0.001)DKPIRT(0.871)PS(0.126)R ;;; 77.776 0.0084211 1066650000 1548100 1420830 1067210 1631540 2166070 1489500 2020650 2090950 1176160 2118650 TRUE FALSE FALSE 1892469.504 1586983.709 1462015.389 1720666.899 1950408.465 1567487.917 1588921.62 1578141.234 1412204.524 1590509.546 1.189851082 0.997783203 0.919211955 1.081833745 1.226279006 0.985525627 0.999001625 0.99222368 0.887894403 1 20.6010576 -6.489852428 24.94452139 0.972436362 1.072775531 0.283736922 0.086926418 990.8997353 748420.1015 0.032586075 0.028717375 3.24E-07 6.489852428 0.100339169 SSDKPIRT(ph)PSR ddPTM_HeLa_A486_30min_R1 4 SSDKPIRTPSR 11 2 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 S(0.004)S(0.004)DKPIRT(0.991)PS(0.001)R;SSDKPIRT(0.97)PS(0.03)R;SSDKPIRT(0.999)PSR;S(0.002)S(0.002)DKPIRT(0.988)PS(0.008)R ;;; 80.469 0.006726 1370130000 762030 718850 435721 327657 772570 799530 977980 923460 556323 857700 TRUE FALSE FALSE 708615.6321 661885.708 604443.8402 762802.0549 675667.0667 700892.1176 733279.06 713208.317 604545.5256 642926.3373 1.10217235 1.02948918 0.94014478 1.186453269 1.050924542 1.090159287 1.140533553 1.109315758 0.940302941 1 19.29429393 -3.550316034 5.679808047 1.062010173 15.50374902 0.024904981 0.077054931 58037.40561 3400.271038 0.019139573 10880473.7 0.000281633 3.550316034 14.44173884 SSDNQWS(ph)ADEDEGQLS(ph)R ddPTM_HeLa_A485_30min_R1 1 SSDNQWSADEDEGQLSR 17 0 A8MV81 A8MV81 HIGD1C HIG1 domain family member 1C 2 0 S(0.23)S(0.257)DNQWS(0.513)ADEDEGQLS(1)R 59.943 0.024351 1235900000 185120 880600 684590 66709 793140 124340 125270 93773 760440 84518 TRUE FALSE FALSE 226299.3053 983578.5098 937848.3292 70353.14375 714172.1967 130850.2501 98505.04114 70775.02472 913053.3328 63449.21804 3.566620872 15.50182241 14.7810857 1.108810257 11.2558077 2.062283101 1.552502051 1.115459369 14.3903008 1 15.95331476 -5.258958192 24.98617322 4.685064248 11.70504093 0.245367736 5.322415733 295.2154645 2972875.857 1.436946958 2.346752229 5.51E-06 5.258958192 7.019976684 QAPLPS(ph)PESLDLGR ddPTM_HeLa_A486_30min_R1 2 QAPLPSPESLDLGR 14 0 H3BRS1;Q12968 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 1 0 QAPLPS(0.972)PES(0.028)LDLGR;QAPLPS(0.953)PES(0.047)LDLGR ; 144.15 9.33E-08 82406000 212798 162063 131671 53188 161486 136445 146339 149971 114030 129404 TRUE FALSE FALSE 197881.9591 149220.5377 182657.5375 123824.352 141230.9201 119611.8032 109723.4344 115825.8771 123914.2122 97000.39612 2.040011866 1.538349776 1.883059707 1.276534498 1.455982921 1.233106337 1.131164807 1.194076331 1.277460888 1 16.56570302 -1.000000009 0.248130332 1.033690694 7.120203744 0.79100421 0.144417749 21.25181249 0.288002975 0.180055222 53.86760373 0.099999998 1.000000009 6.086513051 SSDPGPDIGVVEES(ph)PEKGDEISLRR ddPTM_HeLa_A485_30min_R1 2 SSDPGPDIGVVEESPEKGDEISLRR 25 2 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SSDPGPDIGVVEES(1)PEKGDEISLRR;SSDPGPDIGVVEES(1)PEKGDEISLRR ; 247.98 7.40E-50 414460000 463410 525820 307850 664990 688980 570930 894080 905660 421200 997880 TRUE FALSE FALSE 566493.9558 587310.075 421736.5257 701316.7199 620382.732 600823.012 703052.504 683545.465 505730.9765 749126.8806 0.756205618 0.783992792 0.562970755 0.936178821 0.828141064 0.802031041 0.938495897 0.912456198 0.675093885 1 19.51485057 -5.279750939 24.98633498 0.864929788 0.709350006 0.370545744 0.100763264 885.2298126 1207904.277 0.027671315 0.0411335 5.25E-06 5.279750939 -0.155579782 SSDPGPDIGVVEES(ph)PEKGDEISLRR ddPTM_HeLa_A486_30min_R1 1 SSDPGPDIGVVEESPEKGDEISLRR 25 2 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SSDPGPDIGVVEES(1)PEKGDEISLRR 227.04 1.03E-38 194980000 174760 151270 89277 129230 159730 177070 271160 250880 120880 305950 TRUE FALSE FALSE 162510.2265 139282.8143 123847.4453 300853.9709 139695.174 155224.9037 203312.9 193760.1007 131357.9757 229338.1286 0.708605357 0.607325154 0.540021173 1.311835815 0.609123197 0.676838625 0.886520271 0.844866494 0.572769895 1 17.8071167 -11.65976346 2.130292916 7.174086217 0.757360267 0.106295428 0.215971815 7819172.184 428828.0757 233867441.7 0.056786009 2.19E-12 11.65976346 -6.41672595 SSDQPLTVPVS(ph)PK ddPTM_HeLa_A485_30min_R1 5 SSDQPLTVPVSPK 13 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK ;;;; 302.4 5.72E-58 7434840000 5099730 4605360 3138080 8534680 6510720 4887670 8491410 7895350 3979890 10491730 TRUE FALSE FALSE 6234147.345 5143916.791 4298986.378 9000907.957 5862489.856 5143580.843 6677150.885 5959003.033 4778617.417 7876334.797 0.7915036 0.653085086 0.545810518 1.14277874 0.744316996 0.653042434 0.847748484 0.756570561 0.606705726 1 22.90909301 -11.38731385 2.333128602 2.987099529 0.752001159 0.186589533 0.157072471 7848687.528 957262.6566 82849573.66 0.03926449 4.10E-12 11.38731385 -2.235098369 SSDQPLTVPVS(ph)PK ddPTM_HeLa_A486_30min_R1 7 SSDQPLTVPVSPK 13 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK;SSDQPLT(0.004)VPVS(0.996)PK ;;;;;; 269.91 2.26E-42 6334240000 10234790 9253320 4682740 7051050 7985260 11179510 15344950 13547420 7331970 17791090 TRUE FALSE FALSE 9517384.074 8520053.223 6496022.336 16415200.74 6983674.231 9800295.721 11505481.21 10462968.2 7967511.063 13336085.26 0.713656511 0.638872132 0.48710114 1.230886007 0.523667485 0.734870506 0.862733027 0.784560686 0.597440021 1 23.6688319 -11.57011894 2.140052279 5.402759404 0.73482511 0.140394693 0.199848684 7315132.952 323568.9085 157546548.9 0.048621408 2.69E-12 11.57011894 -4.667934293 SSDTSSTS(ph)PLNSSASQEELHQDEGLVAAPIVSNSEKPIAK ddPTM_HeLa_A486_30min_R1 1 SSDTSSTSPLNSSASQEELHQDEGLVAAPIVSNSEKPIAK 40 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 SSDT(0.002)S(0.002)S(0.012)T(0.103)S(0.877)PLNS(0.004)S(0.001)ASQEELHQDEGLVAAPIVSNSEKPIAK 203.72 2.66E-30 268200000 103780 97306 51286 35672 102160 109310 117920 120540 89576 122480 TRUE FALSE FALSE 96505.55792 89595.11818 71145.31269 83046.21876 89346.1402 95824.44358 88415.16877 93095.67337 97340.5198 91810.21079 1.051141884 0.975873134 0.774917213 0.904542295 0.973161258 1.043723163 0.963021085 1.014001303 1.060236318 1 16.48636699 -5.961877845 4.381036917 1.013578816 0.920028008 0.270035147 0.068917034 0.295053835 12.77059995 0.023813761 0.02656459 1.09E-06 5.961877845 -0.093550808 SSDYQFPS(ph)SPFTDTLK ddPTM_HeLa_A485_30min_R1 4 SSDYQFPSSPFTDTLK 16 0 Q9UK61;Q9UK61-3 Q9UK61 FAM208A Protein FAM208A 1 0 SSDYQFPS(0.679)S(0.308)PFT(0.013)DTLK;SSDYQFPS(0.772)S(0.228)PFTDTLK;SSDYQFPS(0.901)S(0.085)PFT(0.014)DTLK;SSDYQFPS(0.838)S(0.148)PFT(0.014)DTLK ;;; 302.84 6.67E-68 592340000 1325350 1114120 1010890 2015570 1595860 1124360 1627370 1314260 1259980 2542630 TRUE FALSE FALSE 1620169.535 1244406.642 1384860.278 2125675.485 1436970.575 1183229.751 1279669.105 991935.6743 1512846.429 1908799.135 0.848789957 0.651931688 0.725513886 1.113619263 0.752813928 0.619881752 0.670405325 0.519664776 0.792564498 1 20.86423386 -5.997400807 24.98349674 0.687239691 0.82896517 0.082164126 0.16287362 165.9657962 1595232.801 0.050653228 0.057107653 1.01E-06 5.997400807 0.141725479 SSDYQFPS(ph)SPFTDTLK ddPTM_HeLa_A486_30min_R1 4 SSDYQFPSSPFTDTLK 16 0 Q9UK61;Q9UK61-3 Q9UK61 FAM208A Protein FAM208A 1 0 SSDYQFPS(0.873)S(0.127)PFT(0.001)DTLK;SSDYQFPS(0.664)S(0.336)PFTDTLK;SSDYQFPS(0.816)S(0.183)PFTDTLK;SSDYQFPS(0.963)S(0.037)PFTDTLK ;;; 285.94 4.19E-59 719690000 1352171 1401173 797740 533846 1284776 1627387 1744314 1604601 1265536 1807667 TRUE FALSE FALSE 1257390.796 1290138.948 1106646.292 1242820.467 1123627.414 1426616.538 1307868.188 1239268.38 1375233.679 1355015.417 0.927953128 0.952121232 0.816703838 0.917200241 0.829235889 1.052841554 0.965205393 0.914578805 1.014921057 1 20.36987784 -6.257810754 24.9999003 0.982651538 0.889759351 0.489180655 0.051291491 310.6528863 2140290.894 0.017399045 0.016747004 5.52E-07 6.257810754 -0.092892187 SSEAS(ph)PTAQR ddPTM_HeLa_A485_30min_R1 4 SSEASPTAQR 10 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 SS(0.001)EAS(0.998)PT(0.001)AQR;SSEAS(0.958)PT(0.042)AQR;SSEAS(0.906)PT(0.094)AQR;SS(0.001)EAS(0.895)PT(0.104)AQR ;;; 127.78 0.00017244 1034770000 406066 419086 465390 568125 580697 407501 528906 470088 503248 756013 TRUE FALSE FALSE 496393.9808 468094.4621 637557.1275 599160.2302 522880.7677 428837.1222 415900.9123 354798.1809 604245.2575 567552.8725 0.874621564 0.824759216 1.123344024 1.055690596 0.921289968 0.755589731 0.732796771 0.62513679 1.064650162 1 19.11439527 -6.087604406 5.109506052 0.806900447 0.972360557 0.149166534 0.143582374 0.354101313 15.33724384 0.048546215 0.049076972 8.17E-07 6.087604406 0.165460111 SSEAS(ph)PTAQR ddPTM_HeLa_A486_30min_R1 2 SSEASPTAQR 10 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 SSEAS(1)PTAQR;SSEAS(0.839)PT(0.161)AQR ; 162.1 5.50E-07 1199960000 382770 445320 390540 146711 478020 522350 473450 498750 472970 419030 TRUE FALSE FALSE 355939.7996 410031.2214 541767.547 341550.6224 418062.2742 457907.7679 354987.8024 385195.5126 513967.4204 314102.1606 1.133197553 1.305407198 1.724813182 1.087387052 1.330975481 1.457830685 1.1301667 1.22633831 1.636306543 1 18.26087434 -6.750699137 24.99246416 1.267064386 1.343973434 0.03614499 0.223155669 1052.15066 2448351.425 0.085292128 0.065369548 1.78E-07 6.750699137 0.076909048 SSEEPRMS(ph)PDT(ph)CAT(ph)ILEK ddPTM_HeLa_A485_30min_R1 1 SSEEPRMSPDTCATILEK 18 1 Q8NEV4 Q8NEV4 MYO3A Myosin-IIIa 3 0 S(0.388)S(0.411)EEPRMS(0.78)PDT(0.746)CAT(0.675)ILEK 71.527 0.0030584 51051000 51197 31931 20897 108870 49337 45995 95212 70575 30731 141180 TRUE FALSE FALSE 62585.59602 35665.05269 28627.6699 114817.2924 44424.83505 48403.22708 74869.17839 53266.37059 36898.42982 105986.4242 0.590505779 0.336505859 0.270106951 1.083320749 0.4191559 0.456692708 0.706403475 0.502577297 0.348142982 1 16.69351996 -10.49122791 3.587089032 1.007067838 0.526911707 0.29102497 0.222968167 85894031.42 129131498.8 5909589.095 0.055684723 3.23E-11 10.49122791 -0.480156131 SSEEPRMS(ph)PDT(ph)CAT(ph)ILEK ddPTM_HeLa_A486_30min_R1 1 SSEEPRMSPDTCATILEK 18 1 Q8NEV4 Q8NEV4 MYO3A Myosin-IIIa 3 0 S(0.377)S(0.4)EEPRMS(0.79)PDT(0.753)CAT(0.68)ILEK 79.635 0.0015969 68075000 69015 60029 17791 76272 43916 85856 131950 119640 47334 186590 TRUE FALSE FALSE 64177.40489 55272.08342 24680.15166 177565.0706 38407.64578 75263.95964 98934.71438 92400.58372 51436.94923 139866.6495 0.458847088 0.395177003 0.176454871 1.269531166 0.274601886 0.538112266 0.707350285 0.660633425 0.36775707 1 17.09369247 -14 0.189497429 2.858061687 0.466983263 0.179998876 0.290068664 247.3650746 2.417295857 174.8154378 0.79075896 1.00E-14 14 -2.391078424 SSEGGVGVGPGGGDEPPTS(ph)PR ddPTM_HeLa_A485_30min_R1 1 SSEGGVGVGPGGGDEPPTSPR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SSEGGVGVGPGGGDEPPT(0.108)S(0.892)PR 220.17 1.58E-35 389240000 494200 748770 787450 367160 805190 600900 645340 628180 666250 493400 TRUE FALSE FALSE 604133.085 836332.1381 1078760.524 387217.0211 725022.4564 632362.1948 507457.8371 474117.8701 799960.2638 370404.4604 1.631009207 2.25788895 2.912385349 1.045389736 1.957380469 1.707220788 1.37001006 1.280000434 2.159693928 1 18.49874195 -5.268942732 24.9995605 1.536404098 2.266173956 0.374197852 0.451468326 612.4183466 2040445.977 0.124408938 0.188671605 5.38E-06 5.268942732 0.729769857 SSEGGVGVGPGGGDEPPTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SSEGGVGVGPGGGDEPPTSPR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SSEGGVGVGPGGGDEPPT(0.148)S(0.852)PR 199.7 1.28E-26 0 261350 257840 204580 66998 320600 236370 250420 299000 236390 238060 TRUE FALSE FALSE 243030.7146 237407.8194 283798.8548 155974.7299 280387.3585 207209.0726 187762.2673 230924.2271 256880.4755 178448.2265 1.361911628 1.330401675 1.590370834 0.87406153 1.571253265 1.161171936 1.052194639 1.294068491 1.439523836 1 17.44514604 -5.215581386 24.99995304 1.218978745 1.417845279 0.203741171 0.204204406 779.9736582 425209.3875 0.053574552 0.0927932 6.09E-06 5.215581386 0.198866534 SSELEGDTITLKPRPSADLTNSSAPS(ph)PSHK ddPTM_HeLa_A486_30min_R1 2 SSELEGDTITLKPRPSADLTNSSAPSPSHK 30 2 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 SSELEGDTITLKPRPSADLT(0.036)NS(0.23)S(0.052)APS(0.681)PS(0.001)HK;SSELEGDTITLKPRPSADLT(0.001)NS(0.248)S(0.248)APS(0.499)PS(0.004)HK ; 177.46 9.20E-16 475180000 399653 392623 208891 121186 395460 449860 539030 553350 345024 454650 TRUE FALSE FALSE 371639.3885 361510.1236 289779.1895 282127.1324 345857.7193 394360.847 404158.9927 427364.2845 374930.9581 340802.6807 1.090482586 1.060760798 0.850284361 0.827831318 1.014832743 1.157153008 1.185903209 1.253993318 1.100140871 1 18.37857716 -6.166145938 3.902531614 1.1586439 0.954025706 0.431492999 0.097915992 0.218191371 6.051422038 0.035543876 0.035362479 6.82E-07 6.166145938 -0.204618194 SSEMS(ph)PVPMR ddPTM_HeLa_A485_30min_R1 4 SSEMSPVPMR 10 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;D6RE77;B7Z7Y1 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 SSEMS(1)PVPMR;SSEMS(1)PVPMR;SSEMS(1)PVPMR;SS(0.001)EMS(0.998)PVPMR ;;; 146.16 5.09E-06 2093100000 1830840 2299440 2111220 2087300 2954430 2267920 2825780 3106100 2107210 2758470 TRUE FALSE FALSE 2238104.042 2568339.506 2892248.133 2201323.914 2660276.576 2386664.784 2222029.019 2344324.105 2530107.719 2070834.195 1.080774138 1.240243913 1.396658477 1.063013118 1.284640065 1.152513702 1.073011554 1.132067507 1.221781891 1 20.98178062 -6.511248646 22.08566929 1.117012508 1.21665295 0.188938184 0.103189296 217.3313416 412720.0898 0.037104699 0.030907588 3.08E-07 6.511248646 0.099640441 SSEMS(ph)PVPMR ddPTM_HeLa_A486_30min_R1 4 SSEMSPVPMR 10 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3;Q8TEU7-2;D6RE77;B7Z7Y1 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 S(0.026)S(0.019)EMS(0.955)PVPMR;S(0.001)S(0.009)EMS(0.99)PVPMR;SSEMS(1)PVPMR;S(0.001)S(0.066)EMS(0.933)PVPMR ;;; 119.94 0.00027292 1909380000 2154540 2391430 1811450 842340 2655400 2219230 2519240 2583690 1918830 2448710 TRUE FALSE FALSE 2003517.872 2201924.377 2512891.952 1961010.09 2322334.971 1945443.966 1888899.506 1995440.189 2085155.729 1835537.078 1.091515882 1.199607681 1.369022714 1.068357656 1.265207333 1.059877237 1.029071834 1.087115163 1.13599216 1 20.80777083 -6.277973282 24.23179943 1.065772243 1.201006768 0.38842258 0.08545823 601.0485362 880882.7567 0.029772086 0.026338928 5.27E-07 6.277973282 0.135234524 SSEPVKETVQTTQS(ph)PTPVEK ddPTM_HeLa_A485_30min_R1 4 SSEPVKETVQTTQSPTPVEK 20 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 SSEPVKETVQTTQS(1)PTPVEK;SSEPVKETVQTTQS(0.999)PT(0.001)PVEK;SSEPVKETVQTTQS(0.885)PT(0.115)PVEK;SSEPVKETVQTT(0.002)QS(0.89)PT(0.108)PVEK ;;; 286.44 2.32E-73 11674500000 4243270 3373970 2161150 5533520 4338220 4452820 6858100 6352250 3264770 7373600 TRUE FALSE FALSE 5187170.772 3768526.442 2960649.318 5835802.186 3906291.584 4685962.77 5392810.909 4794350.728 3919979.393 5535497.221 0.937074045 0.680792762 0.534847946 1.054250766 0.705680344 0.846529694 0.974223397 0.866110222 0.708153078 1 22.40028148 -5.260062178 24.99954548 0.869057752 0.713893716 0.214246861 0.14091252 202.7737059 3680803.553 0.038455264 0.062260155 5.49E-06 5.260062178 -0.155164036 SSEPVKETVQTTQS(ph)PTPVEK ddPTM_HeLa_A486_30min_R1 5 SSEPVKETVQTTQSPTPVEK 20 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 SSEPVKETVQTT(0.005)QS(0.987)PT(0.007)PVEK;SSEPVKETVQTTQS(1)PTPVEK;SSEPVKET(0.001)VQT(0.005)T(0.03)QS(0.963)PTPVEK;SSEPVKETVQTTQS(0.989)PT(0.011)PVEK;SSEPVKETVQTT(0.001)QS(0.999)PTPVEK ;;;; 329.57 2.64E-114 11680460000 6608770 6330520 2940020 2947190 5763610 7518940 9428680 8593950 5369500 10072320 TRUE FALSE FALSE 6145529.351 5828866.54 4078474.48 6861207.263 5040684.29 6591329.63 7069524.538 6637295.19 5834932.583 7550145.512 0.81396171 0.772020424 0.540184884 0.908751659 0.667627436 0.873006966 0.93634282 0.879095003 0.772823858 1 22.84807302 -6.362325724 6.724619627 0.889006344 0.740764072 0.347267133 0.104112348 0.305177722 17.50426127 0.036041823 0.031705951 4.34E-07 6.362325724 -0.148242272 SSEPVQHEES(ph)IRKPSPEPR ddPTM_HeLa_A485_30min_R1 1 SSEPVQHEESIRKPSPEPR 19 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SSEPVQHEES(0.937)IRKPS(0.063)PEPR 124.19 2.67E-06 1168700000 330010 335330 294420 286130 574320 399630 559900 667960 310740 506900 TRUE FALSE FALSE 403419.586 374543.9265 403338.2098 301760.5574 517138.6842 420554.0089 440272.791 504141.7627 373102.6677 380539.1588 1.060126341 0.984245426 1.059912497 0.792981617 1.358963124 1.105153042 1.156971052 1.324809158 0.980458014 1 18.53768539 -5.760974298 24.99999992 1.168299801 0.981139714 0.302396345 0.132827032 14.81626082 796402.4844 0.038187289 0.046338083 1.73E-06 5.760974298 -0.187160087 SSEPVQHEES(ph)IRKPSPEPR ddPTM_HeLa_A486_30min_R1 2 SSEPVQHEESIRKPSPEPR 19 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SSEPVQHEES(0.957)IRKPS(0.043)PEPR;SSEPVQHEES(0.777)IRKPS(0.223)PEPR ; 151.33 5.92E-09 2991600000 674740 629010 426360 131190 787030 623070 853130 864010 516740 653210 TRUE FALSE FALSE 627444.2104 579164.9568 591458.0103 305416.95 688313.3586 546201.9583 639667.8505 667293.7842 561531.4393 489641.9643 1.281434714 1.182833578 1.207939787 0.623755667 1.405748299 1.115512963 1.306399159 1.362819842 1.146820494 1 18.90136768 SSEPVQHEESIRKPS(ph)PEPR ddPTM_HeLa_A485_30min_R1 6 SSEPVQHEESIRKPSPEPR 19 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SSEPVQHEESIRKPS(1)PEPR;SSEPVQHEES(0.045)IRKPS(0.955)PEPR;SSEPVQHEESIRKPS(1)PEPR;SSEPVQHEESIRKPS(1)PEPR;SSEPVQHEES(0.022)IRKPS(0.978)PEPR;SSEPVQHEES(0.009)IRKPS(0.991)PEPR ;;;;; 220.66 4.87E-35 16317630000 2761490 3361870 2731300 2846687 4791270 3823140 5469990 6108270 3271210 4566060 TRUE FALSE FALSE 3375773.923 3755011.452 3741721.529 3002194.303 4314234.336 4023313.699 4301281.951 4610207.205 3927711.842 3427825.274 0.984815051 1.095450075 1.091573003 0.875830611 1.258592253 1.173721931 1.254813652 1.344936465 1.145831986 1 21.70886214 -5.782672171 24.99996268 1.215358081 1.023573472 0.42602646 0.103093876 213.4600266 251331.4042 0.030988719 0.03517174 1.65E-06 5.782672171 -0.191784609 SSEPVQHEESIRKPS(ph)PEPR ddPTM_HeLa_A486_30min_R1 2 SSEPVQHEESIRKPSPEPR 19 2 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SSEPVQHEES(0.02)IRKPS(0.98)PEPR;SSEPVQHEESIRKPS(1)PEPR ; 201.63 6.11E-26 2405700000 1210120 1090080 820210 278900 1455500 1159360 1502260 1613390 884460 1188750 TRUE FALSE FALSE 1125296.837 1003698.091 1137817.278 649293.2948 1272937.618 1016329.951 1126378.659 1246056.317 961125.7049 891079.2625 1.262847071 1.126384748 1.276897944 0.728659416 1.428534667 1.140560659 1.264061129 1.398367541 1.078608543 1 19.76519424 SSEPVREDSSGMHHENQTYPPY(ph)SPQAQPQPIHR ddPTM_HeLa_A485_30min_R1 1 SSEPVREDSSGMHHENQTYPPYSPQAQPQPIHR 33 1 A0A087X0K9;G5E9E7;Q07157-2;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 1 0 SSEPVREDSSGMHHENQT(0.135)Y(0.09)PPY(0.402)S(0.371)PQAQPQPIHR 57.076 0.0059402 1101400000 379310 285680 162840 337570 264380 311630 478600 428430 209130 431470 TRUE FALSE FALSE 463686.2009 319087.7909 223081.2923 356010.5943 238057.3989 327946.4649 376343.2002 323356.8707 251100.4727 323912.4696 1.431516982 0.985104992 0.688708566 1.099095057 0.734943607 1.012453967 1.161866972 0.998284725 0.775210887 1 18.30524448 -4.271618172 4.896463862 0.937417518 1.453990465 0.500339612 0.148108752 0.134448684 9.604236367 0.036995373 0.232421782 5.35E-05 4.271618172 0.516572947 SSESGNSVK(ac)R ddPTM_HeLa_A485_30min_R1 1 SSESGNSVKR 10 1 H3BNK9;H3BU93;Q9GZU8 H3BNK9 FAM192A Protein FAM192A 0 1 SSESGNSVK(1)R 68.893 0.0055714 0 620.42 896.42 1173.6 748.86 1135.6 1167.8 1839.1 2795 2759.3 4040.8 FALSE TRUE FALSE 758.4302886 1001.248521 1607.763478 789.7683256 1022.535677 1228.944202 1446.161261 2109.521868 3313.0662 3033.502925 0.250017985 0.330063476 0.530002284 0.260348628 0.337080828 0.40512379 0.476729806 0.69540789 1.092158564 1 11.56676899 -7.452767503 1.735859788 1.060082498 0.356053345 0.911912066 0.084491351 0.10046033 0.539493977 0.072258392 0.024572086 3.53E-08 7.452767503 -0.704029152 SSESGNSVK(ac)R ddPTM_HeLa_A486_30min_R1 2 SSESGNSVKR 10 1 H3BNK9;H3BU93;Q9GZU8 H3BNK9 FAM192A Protein FAM192A 0 1 ; SSESGNSVK(1)R;SSESGNSVK(1)R 239.42 1.66E-26 44287000 14817.6 19243.7 16130.5 8766 24092.2 20837.3 19974.3 25343.8 22137.3 29407 FALSE TRUE FALSE 13778.96276 17718.75913 22376.66159 20407.69101 21070.33163 18266.60578 14976.51887 19573.56999 24056.17899 22043.29579 0.625086325 0.803816239 1.015123228 0.925800352 0.955861221 0.828669449 0.679413778 0.88796023 1.091314984 1 14.42805232 -4.398272089 3.383919022 0.908471497 0.622162134 0.415103735 0.107849848 0.285476193 5.345818863 0.029355522 0.167188915 4.00E-05 4.398272089 -0.286309363 SSETGAFRVPS(ph)PGMEEAGCSR ddPTM_HeLa_A485_30min_R1 4 SSETGAFRVPSPGMEEAGCSR 21 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 SSETGAFRVPS(1)PGMEEAGCSR;SSETGAFRVPS(1)PGMEEAGCSR;SSETGAFRVPS(1)PGMEEAGCSR;S(0.015)S(0.015)ET(0.014)GAFRVPS(0.955)PGMEEAGCS(0.001)R ;;; 156.58 2.21E-10 3653860000 438947 848410 790500 390059 957140 737090 884750 1130880 618329 591020 TRUE FALSE FALSE 536589.2458 947624.1693 1082938.845 411366.9355 861843.7809 775682.8926 695715.9348 853529.9068 742421.9587 443689.5909 1.209379838 2.135781836 2.440757835 0.927150296 1.9424476 1.748255782 1.568024017 1.923709558 1.673291359 1 18.75919118 -8.044818344 20.85813944 0.999999991 1.751435586 0.221075793 0.411821771 1701.250194 791751.0997 0.388675758 0.100355649 9.02E-09 8.044818344 0.751435595 SSETGAFRVPS(ph)PGMEEAGCSR ddPTM_HeLa_A486_30min_R1 3 SSETGAFRVPSPGMEEAGCSR 21 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 SS(0.001)ET(0.001)GAFRVPS(0.998)PGMEEAGCSR;SSETGAFRVPS(1)PGMEEAGCSR;SSETGAFRVPS(1)PGMEEAGCSR ;; 131.2 5.18E-07 2307400000 571506 642752 611356 264218 941210 596624 736828 810700 497545 690789 TRUE FALSE FALSE 531446.3807 591817.9907 848089.4159 615112.8568 823154.6654 523018.5969 552465.841 626121.3075 540672.6012 517810.9381 1.026332859 1.142922922 1.637836039 1.187910126 1.58968188 1.010057066 1.066925784 1.209169721 1.044150599 1 18.98206592 -6.30491892 24.99943638 1.079187772 1.317929247 0.316407125 0.183867787 630.0484133 362257.0342 0.065399891 0.057677651 4.96E-07 6.30491892 0.238741475 SSFASSSASDASKPSS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SSFASSSASDASKPSSPR 18 1 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 SSFASSSASDASKPS(0.037)S(0.962)PR;SSFASSSASDAS(0.001)KPS(0.051)S(0.949)PR;SSFASSSASDASKPS(0.005)S(0.995)PR;SSFASSSASDASKPS(0.008)S(0.992)PR ;;; 198.95 1.88E-25 6930200000 4956790 4587650 3290310 6435000 5939900 4862900 7724400 7719200 4084210 9012600 TRUE FALSE FALSE 6059410.835 5124135.76 4507532.59 6786527.756 5348502.7 5117513.925 6074018.837 5826054.097 4903873.484 6765924.685 0.895577636 0.757344487 0.666210873 1.003045123 0.790505799 0.756365783 0.897736691 0.861087637 0.724789842 1 22.68985569 -10.53516137 3.14047148 1.006333475 0.817361412 0.254268938 0.094036211 44269894.57 52083405.93 2378045.89 0.02346184 2.92E-11 10.53516137 -0.188972063 SSFASSSASDASKPSS(ph)PR ddPTM_HeLa_A486_30min_R1 3 SSFASSSASDASKPSSPR 18 1 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 SSFASSSASDASKPS(0.023)S(0.977)PR;SSFASSSASDASKPS(0.009)S(0.991)PR;SSFASSSASDASKPS(0.039)S(0.961)PR ;; 170.32 1.30E-12 5029720000 4945700 4320100 2167870 1994380 4005300 5014200 5876000 5761500 3556430 6820600 TRUE FALSE FALSE 4599031.97 3977759.542 3007327.322 4643017.43 3502917.926 4395598.985 4405762.65 4449732.223 3864704.216 5112677.365 0.899534948 0.778018885 0.588209876 0.908138163 0.685143551 0.859745036 0.86173297 0.870333077 0.755906141 1 22.28564756 -6.378432784 12.79639154 0.86111156 0.769536678 0.180594567 0.1032605 1.379636749 143.9781386 0.035350883 0.031172117 4.18E-07 6.378432784 -0.091574882 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHK ddPTM_HeLa_A486_30min_R1 2 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK 30 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.474)S(0.425)PS(0.031)S(0.031)DS(0.038)LLFAHK;SSFDWLTGSSTDPLVDHT(0.479)S(0.479)PS(0.019)S(0.019)DS(0.004)LLFAHK ; 137.38 1.92E-06 655375000 81250 78300 62071 12217.4 77004 79987 86084 87834 85270 59625 TRUE FALSE FALSE 75554.79458 72095.22284 86106.55352 28442.72463 67345.44029 70119.01719 64544.8727 67836.1156 92661.27226 44694.51191 1.69047141 1.613066566 1.926557643 0.636380697 1.506794401 1.56885072 1.444134189 1.517772825 2.073213652 1 15.44781007 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHKR ddPTM_HeLa_A485_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR 31 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.421)S(0.421)PS(0.072)S(0.072)DS(0.013)LLFAHKR 170.82 8.33E-15 561390000 224880 398300 288690 172470 458600 331460 431450 671240 301950 310000 TRUE FALSE FALSE 274903.7802 444877.7203 395488.4444 181891.5994 412940.1738 348814.7331 339267.1829 506617.3375 362548.5954 232722.7051 1.181250364 1.911621472 1.699397763 0.781580806 1.774387134 1.498842723 1.457817288 2.176914097 1.557856571 1 17.82825245 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHKR ddPTM_HeLa_A486_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR 31 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.901)S(0.096)PS(0.003)S(0.001)DSLLFAHKR 266.67 4.98E-64 721500000 335290 301880 235320 25918 305300 206540 283930 284620 233160 232130 TRUE FALSE FALSE 311787.9024 277957.9294 326442.2061 60338.41382 267006.4272 181059.1947 212887.7109 219818.2392 253370.4965 174003.1371 1.791852191 1.597430564 1.876070809 0.346766241 1.534492031 1.040551324 1.223470533 1.263300438 1.456126026 1 17.40875379 SSFDWLTGSSTDPLVDHTS(ph)PSSDSLLFAHK ddPTM_HeLa_A485_30min_R1 3 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK 30 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.043)S(0.929)PS(0.024)S(0.004)DSLLFAHK;SSFDWLTGSSTDPLVDHT(0.174)S(0.658)PS(0.138)S(0.029)DS(0.001)LLFAHK;SSFDWLTGSSTDPLVDHT(0.178)S(0.779)PS(0.034)S(0.008)DSLLFAHK ;; 348.66 1.23E-146 1239494000 293670 302069 279447 337090 443386 263567 406967 410013 323984 517863 TRUE FALSE FALSE 358995.8784 337393.3419 382826.0741 355504.3731 399240.933 277366.9606 320015.1758 309456.6689 389004.617 388769.2847 0.923416259 0.86784979 0.984712757 0.91443534 1.02693538 0.713448751 0.823149329 0.79599053 1.000605327 1 18.56855472 -6.238860539 24.99252188 0.851170067 0.939947012 0.139929527 0.091088658 1385.003941 1533062.159 0.029437945 0.029416449 5.77E-07 6.238860539 0.088776945 SSFDWLTGSSTDPLVDHTS(ph)PSSDSLLFAHKR ddPTM_HeLa_A485_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR 31 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.129)S(0.747)PS(0.103)S(0.018)DS(0.003)LLFAHKR 116.73 3.90E-05 770010000 30339 48755 41523 22679 48581 43009 55544 83756 39682 38481 TRUE FALSE FALSE 37087.80588 54456.47314 56884.08562 23917.89634 43744.10506 45260.88474 43676.57065 63214.70968 47645.81342 28888.39489 1.283830619 1.885063997 1.969098174 0.827941339 1.514244915 1.566749724 1.511907145 2.188238908 1.64930636 1 14.81820243 SSFDWLTGSSTDPLVDHTS(ph)PSSDSLLFAHKR ddPTM_HeLa_A486_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR 31 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.165)S(0.832)PS(0.002)SDSLLFAHKR 313.43 3.21E-109 622250000 317940 293460 198730 15995 324690 205910 286660 297170 236950 230670 TRUE FALSE FALSE 295654.0478 270205.1608 275683.5782 37237.16834 283964.3526 180506.9177 214934.636 229510.8782 257489.0168 172908.7306 1.709885018 1.562703976 1.594387844 0.215357363 1.642278858 1.04394334 1.243052536 1.327352745 1.489161455 1 17.39965119 -5.048264342 24.99995634 1.151915845 1.621862038 0.27257504 0.362822337 504.5977533 261370.7478 0.0960337 0.166340089 8.95E-06 5.048264342 0.469946194 SSFDWLTGSSTDPLVDHTSPSSDS(ph)LLFAHKR ddPTM_HeLa_A486_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR 31 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSS(0.005)T(0.015)DPLVDHT(0.188)S(0.188)PS(0.188)S(0.188)DS(0.227)LLFAHKR 50.705 0.017882 291100000 24566 24671 17965 11951 27390 23270 26644 26647 24510 28812 TRUE FALSE FALSE 22844.05026 22715.98011 24921.52912 27822.53197 23954.4908 20399.18399 19977.38939 20580.0598 26634.54653 21597.28767 1.057727739 1.051797821 1.153919395 1.28824195 1.10914348 0.944525271 0.924995291 0.952900203 1.233235717 1 14.39856252 -6.110629465 6.137408044 1.003635883 1.140504737 0.265791669 0.100908633 0.328160488 15.7915948 0.035301041 0.035431224 7.75E-07 6.110629465 0.136868854 SSFES(ph)PAQDQSWMFLGHSEVGDPSLDAR ddPTM_HeLa_A485_30min_R1 2 SSFESPAQDQSWMFLGHSEVGDPSLDAR 28 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.002)S(0.009)FES(0.99)PAQDQSWMFLGHSEVGDPSLDAR;S(0.256)S(0.256)FES(0.488)PAQDQSWMFLGHSEVGDPSLDAR ; 257.5 3.37E-63 419080000 124667 150732 146197 140604 187974 130546 169737 173803 142409 183697 TRUE FALSE FALSE 152398.7441 168358.7962 200281.3541 148284.8405 169258.6485 137381.1867 133471.3033 131177.5417 170989.18 137904.7186 1.105101737 1.220834196 1.452316905 1.075270245 1.22735937 0.996203669 0.967851606 0.951218661 1.239908118 1 17.0733123 -6.25731717 23.76194378 1.02403852 1.221726055 0.370904022 0.12027769 191.544301 1104132.444 0.040797768 0.039343942 5.53E-07 6.25731717 0.197687535 SSFES(ph)PAQDQSWMFLGHSEVGDPSLDAR ddPTM_HeLa_A486_30min_R1 2 SSFESPAQDQSWMFLGHSEVGDPSLDAR 28 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.28)S(0.28)FES(0.441)PAQDQSWMFLGHSEVGDPSLDAR;S(0.272)S(0.272)FES(0.455)PAQDQSWMFLGHSEVGDPSLDAR ; 262.77 2.05E-63 315320000 92935 100442 76212 30586 102950 90098 95817 104850 87675 101412 TRUE FALSE FALSE 86420.73642 92482.61012 105723.3274 71205.75373 90037.05103 78982.62481 71842.57315 80977.94386 95274.73959 76017.77512 1.136849063 1.216591909 1.390771136 0.936698734 1.184421024 1.039002058 0.945075978 1.065250117 1.253321864 1 16.21404918 -5.265236723 24.99994404 1.062710774 1.24492282 0.382515129 0.109141414 348.757221 2296060.207 0.030575915 0.047378086 5.43E-06 5.265236723 0.182212047 SSFFSDRGS(ph)GSR ddPTM_HeLa_A485_30min_R1 4 SSFFSDRGSGSR 12 1 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8YDH3;A0A2R8Y650;A0A087WX09;A0A2R8YCU0;A0A2R8YF89;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 SSFFSDRGS(0.946)GS(0.054)R;SSFFSDRGS(0.982)GS(0.018)R;SSFFSDRGS(0.995)GS(0.005)R;SSFFSDRGS(0.996)GS(0.004)R ;;; 164.63 1.20E-10 3267140000 1340870 1643600 1618560 1338800 2387650 1593580 2268480 2558470 2052200 2223920 TRUE FALSE FALSE 1639141.906 1835804.723 2217332.698 1411935.254 2149927.182 1677017.385 1783800.716 1931001.221 2464057.716 1669537.672 0.981793902 1.099588678 1.328111809 0.845704339 1.287738048 1.00448011 1.068439932 1.156608355 1.475892253 1 20.67101722 -7.532327772 24.98399884 1.264047539 1.094222904 0.106269155 0.170264646 392.6018675 1038045.175 0.106164317 0.040235064 2.94E-08 7.532327772 -0.169824636 SSFFSDRGS(ph)GSR ddPTM_HeLa_A486_30min_R1 4 SSFFSDRGSGSR 12 1 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8YDH3;A0A2R8Y650;A0A087WX09;A0A2R8YCU0;A0A2R8YF89;A0A2R8Y5G6;A0A2R8YCW1;A0A2R8YFR4;A0A2R8YFS5;A0A2R8Y4A4 O00571;A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 SSFFSDRGS(0.994)GS(0.006)R;SSFFSDRGS(0.991)GS(0.009)R;SSFFSDRGS(0.933)GS(0.067)R;SSFFSDRGS(0.993)GS(0.007)R ;;; 175.62 2.47E-11 3524710000 1980280 1838530 1199530 611069 1732790 1797970 2227770 2803500 1484390 2144930 TRUE FALSE FALSE 1841472.598 1692838.187 1664020.141 1422599.514 1515447.321 1576154.742 1670358.383 2165204.25 1613058.12 1607825.567 1.145318644 1.052874281 1.034950666 0.884797171 0.942544609 0.980302076 1.038892786 1.34666614 1.003254429 1 20.61667947 -7.018306407 24.96664497 1.143532067 1.002363481 0.15041592 0.111121108 1068.258701 1456908.214 0.050796332 0.030039105 9.59E-08 7.018306407 -0.141168586 SSFLS(ph)SPER ddPTM_HeLa_A485_30min_R1 1 SSFLSSPER 9 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 S(0.001)S(0.029)FLS(0.52)S(0.45)PER 76.282 0.0061571 0 90518 140390 145280 113880 180310 118050 147110 167140 128020 147300 TRUE FALSE FALSE 110653.4168 156807.3893 199025.1176 120100.976 162357.7033 124230.9155 115678.7467 126148.6529 153712.4397 110580.8209 1.000656497 1.418034231 1.799815882 1.086092282 1.468226606 1.123439983 1.046101357 1.140782388 1.390046109 1 16.75474166 -6.275086288 23.91711917 1.142999551 1.367912159 0.184374265 0.224649249 782.7554592 1371826.229 0.079469497 0.070502531 5.31E-07 6.275086288 0.224912608 SSFLSS(ph)PER ddPTM_HeLa_A485_30min_R1 3 SSFLSSPER 9 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 SSFLS(0.048)S(0.951)PER;SSFLS(0.018)S(0.982)PER;SSFLS(0.03)S(0.97)PER ;; 106.62 0.0011036 818720000 1018170 1266660 1211190 1035270 1658310 1180130 1541110 1644360 1135990 1464860 TRUE FALSE FALSE 1244658.404 1414784.869 1659259.583 1091824.179 1493202.834 1241919.782 1211839.259 1241078.132 1363972.773 1099697.361 1.131819033 1.286522019 1.508832923 0.992840592 1.357830697 1.129328692 1.101975236 1.128563345 1.240316492 1 20.06867511 -6.179734582 1.048098756 1.120463187 1.273392351 0.164713042 0.140158716 0.972101576 2.256055326 0.073838156 0.072397851 6.61E-07 6.179734582 0.152929164 SSFLSS(ph)PER ddPTM_HeLa_A486_30min_R1 2 SSFLSSPER 9 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 SSFLS(0.233)S(0.767)PER;SSFLS(0.004)S(0.996)PER ; 120.65 0.00043124 537800000 731750 781090 618180 262895 895830 763670 827920 862940 662130 782050 TRUE FALSE FALSE 680458.1038 719193.5837 857555.8514 612032.846 783466.6481 669456.1598 620765.6592 666467.3998 719523.9615 586219.5897 1.160756337 1.226833078 1.462857718 1.044033425 1.33647299 1.141988722 1.058930254 1.136890359 1.227396652 1 19.16108165 -6.450640456 8.22405034 1.114833501 1.245622734 0.252800865 0.115374511 0.509072495 53.59590021 0.03979822 0.034982789 3.54E-07 6.450640456 0.130789233 SSFSQHAR ddPTM_HeLa_A485_30min_R1 5 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;;; ;;;; 128.69 0.001982 178327000 208235.6 460638.5 413596.3 99719.7 444480 265976.1 361385.3 425968.4 353266.4 220129.8 FALSE FALSE TRUE 254556.8908 514506.1656 566602.7825 105167.1347 400226.0105 279902.1973 284172.3784 321498.982 424163.7261 165255.492 1.540383848 3.113398285 3.428647215 0.636391163 2.421862085 1.693754282 1.719594156 1.945466248 2.566714854 1 17.33433869 -5.24360081 24.99386849 1.780500951 2.736068521 0.282921164 0.709774588 1092.353651 1530509.835 0.187015471 0.323043192 5.71E-06 5.24360081 0.95556757 SSFSQHAR ddPTM_HeLa_A486_30min_R1 4 SSFSQHAR 8 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 123.98 0.0021879 133086000 212025 195163 243224 9209.2 236144 166599 178803 147047 238454 67751 FALSE FALSE TRUE 197163.1424 179697.5731 337406.8466 21439.48301 206524.6176 146045.7092 134064.5982 113567.6081 259123.3847 50785.70862 3.882256402 3.538349233 6.643736117 0.422155831 4.066589267 2.875724554 2.639809542 2.236211943 5.102289439 1 15.63213495 -5.256645318 24.99965627 2.743611566 4.573137209 0.287735398 1.478652747 572.4618218 2985214.46 0.387469237 0.644338877 5.54E-06 5.256645318 1.829525643 SSFTPS(ph)SPENVIGDFLLQDR ddPTM_HeLa_A485_30min_R1 1 SSFTPSSPENVIGDFLLQDR 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 S(0.002)S(0.002)FT(0.017)PS(0.489)S(0.489)PENVIGDFLLQDR 94.551 0.00043235 88310000 29057 43548 38490 31954 44655 35125 45050 53427 36973 45109 TRUE FALSE FALSE 35520.6294 48640.55978 52729.0527 33699.56611 40208.99141 36964.09069 35424.69948 40323.94448 44393.14196 33864.15647 1.048915228 1.436343463 1.557075628 0.995139688 1.187361376 1.091540276 1.046082441 1.190755911 1.310918286 1 15.04747144 -5.272529115 24.99768278 1.124213917 1.356334652 0.330743255 0.149579546 816.3482015 1840151.469 0.042283524 0.063393379 5.34E-06 5.272529115 0.232120735 SSFTPS(ph)SPENVIGDFLLQDR ddPTM_HeLa_A486_30min_R1 3 SSFTPSSPENVIGDFLLQDR 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 S(0.002)S(0.002)FT(0.002)PS(0.498)S(0.498)PENVIGDFLLQDR;S(0.001)S(0.001)FT(0.009)PS(0.494)S(0.494)PENVIGDFLLQDR;S(0.001)S(0.001)FT(0.055)PS(0.471)S(0.471)PENVIGDFLLQDR ;; 83.418 0.001433 115918000 78628 82802 71568.3 28148.4 84182 74390 85017 90398 75238 81624 TRUE FALSE FALSE 73116.58324 76240.46796 99281.46243 65530.89774 73623.10859 65212.51814 63744.84738 69816.34877 81759.69042 61184.81912 1.195011839 1.246068372 1.622648622 1.071031976 1.203290451 1.065828405 1.041840906 1.14107306 1.336274122 1 15.90088612 SSFTPSS(ph)PENVIGDFLLQDR ddPTM_HeLa_A485_30min_R1 1 SSFTPSSPENVIGDFLLQDR 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 SSFTPS(0.024)S(0.976)PENVIGDFLLQDR 164.53 2.38E-13 86076000 47879 66385 68976 54740 87113 70003 84078 86781 60928 86231 TRUE FALSE FALSE 58529.51837 74148.14828 94493.09273 57730.30759 78439.72385 73668.24883 66114.04845 65497.82368 73155.69074 64735.19866 0.904137464 1.145406978 1.459686456 0.891791619 1.211701292 1.137993709 1.021299846 1.011780686 1.130075944 1 15.98226275 -6.754785091 24.25056708 1.041770842 1.134579059 0.065790498 0.153193245 309.1079206 1126503.351 0.059398344 0.044895486 1.76E-07 6.754785091 0.092808217 SSFTPSS(ph)PENVIGDFLLQDR ddPTM_HeLa_A486_30min_R1 1 SSFTPSSPENVIGDFLLQDR 20 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 SSFTPS(0.128)S(0.872)PENVIGDFLLQDR 137.45 1.68E-07 69379000 73753 78819 57850 30197 72237 72214 78194 73155 61444 78901 TRUE FALSE FALSE 68583.29556 72573.09539 80251.06928 70300.14207 63176.36188 63304.9709 58629.03415 56499.20346 66770.01539 59143.67604 1.159604883 1.227064333 1.35688335 1.188633287 1.068184565 1.070359084 0.991298446 0.955287315 1.128945981 1 15.8519363 -5.752233426 2.68113221 1.027222883 1.249432336 0.706799643 0.063353188 0.148555374 2.188342132 0.021057415 0.026654316 1.77E-06 5.752233426 0.222209453 SSFVSDNSLNRS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SSFVSDNSLNRSPR 14 1 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 0 SSFVSDNSLNRS(1)PR;SSFVSDNSLNRS(1)PR ; 116.96 7.14E-05 745240000 610210 853890 816960 635830 992650 750100 999780 1080830 702200 981130 TRUE FALSE FALSE 745949.1093 953745.0076 1119187.501 670563.7829 893818.2806 789374.0761 786168.8355 815754.7478 843125.099 736552.3474 1.012757765 1.294877426 1.519494853 0.91040886 1.213516302 1.071714833 1.067363153 1.107531258 1.144691348 1 19.49042854 -5.27429631 24.99982763 1.083575128 1.277626778 0.312081991 0.13693869 934.3222926 1816752.688 0.038209319 0.057064453 5.32E-06 5.27429631 0.194051651 SSFVSDNSLNRS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SSFVSDNSLNRSPR 14 1 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 0 SSFVSDNS(0.002)LNRS(0.998)PR;SSFVSDNS(0.003)LNRS(0.997)PR ; 96.143 0.00015189 0 336300 317800 280640 111788 390990 278285 345830 339330 291120 309360 TRUE FALSE FALSE 312727.1067 292616.3706 389311.3238 260248.1135 341948.3884 243953.0261 259299.6762 262071.9665 316354.516 231894.2424 1.348576417 1.261852677 1.678831349 1.122270699 1.47458766 1.052001221 1.118180743 1.13013572 1.364218933 1 17.82310747 -6.263386834 24.9994149 1.140120393 1.373406175 0.366060327 0.160577674 205.1099925 2632975.063 0.053307881 0.049402206 5.45E-07 6.263386834 0.233285783 SSFYSGGWQEGSS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 SSFYSGGWQEGSSSPR 16 0 D3DPQ1;Q96BR9-2;Q96BR9 D3DPQ1 ZBTB8A Zinc finger and BTB domain-containing protein 8A 1 0 SSFYSGGWQEGS(0.09)S(0.557)S(0.353)PR 108.34 6.14E-05 0 116870 116690 79983 33193 125530 100890 128020 116070 78965 110890 TRUE FALSE FALSE 108678.0165 107443.0594 110954.5596 77274.98148 109784.8569 88443.21757 95988.04194 89643.39479 85809.74978 83122.42223 1.307445255 1.292588167 1.334833089 0.929652667 1.320761041 1.064011553 1.154779172 1.078450223 1.032329755 1 16.34295008 -1.000000026 0.183788986 0.983093027 2.56057184 0.448941422 0.106507716 50.88058179 0.580885046 0.224710279 22.55730572 0.099999994 1.000000026 1.577478813 SSFYSGGWQEGSSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SSFYSGGWQEGSSSPR 16 0 D3DPQ1;Q96BR9-2;Q96BR9 D3DPQ1 ZBTB8A Zinc finger and BTB domain-containing protein 8A 1 0 SSFYSGGWQEGSS(0.012)S(0.988)PR;SSFYSGGWQEGSS(0.042)S(0.958)PR ; 319.33 1.78E-78 238930000 357770 474710 417370 398370 550630 409090 600900 541820 365640 534860 TRUE FALSE FALSE 437354.7022 530223.2051 571772.5312 420131.9444 495807.3438 430509.3198 472512.8061 408937.7955 439020.5942 401529.2454 1.089222534 1.320509555 1.423987263 1.046329624 1.234797588 1.072174256 1.17678304 1.018450836 1.093371402 1 18.61514554 -6.397216411 0.627774403 1.029055227 1.265045644 0.348322614 0.106944035 0.891463926 0.753819105 0.088272654 0.084506341 4.01E-07 6.397216411 0.235990417 SSFYSGGWQEGSSS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SSFYSGGWQEGSSSPR 16 0 D3DPQ1;Q96BR9-2;Q96BR9 D3DPQ1 ZBTB8A Zinc finger and BTB domain-containing protein 8A 1 0 SSFYSGGWQEGS(0.011)S(0.098)S(0.89)PR;SSFYSGGWQEGS(0.005)S(0.036)S(0.959)PR ; 192.72 3.23E-18 270610000 506190 466570 354790 148797 490700 446890 499920 496520 387920 517690 TRUE FALSE FALSE 470708.695 429597.294 492174.1896 346406.9358 429151.8304 391757.2554 374834.7284 383473.235 421545.2179 388057.0544 1.212988373 1.107046732 1.268303679 0.892670116 1.105898799 1.009535198 0.965926851 0.988187769 1.08629701 1 18.56590926 -5.254487798 24.99973177 1.008962326 1.187206308 0.625013176 0.067031764 361.2705172 1299220.892 0.017469612 0.0294347 5.57E-06 5.254487798 0.178243981 SSFYVNGLTLGGQK ddPTM_HeLa_A485_30min_R1 2 SSFYVNGLTLGGQK 14 0 P07737;K7EJ44;I3L3D5 P07737 PFN1 Profilin-1 0 0 ; ; 341.74 1.46E-114 349020000 511670 454840 396420 587550 669790 624780 951030 1029180 409050 883650 FALSE FALSE TRUE 625489.2263 508029.5814 543072.2544 619646.3687 603103.3558 657492.5147 747834.6713 776771.9913 491142.583 663372.3174 0.942893169 0.765828733 0.818653779 0.934085358 0.909147608 0.991136497 1.127322699 1.170944236 0.740372443 1 19.33945928 -5.914268744 1.532103216 1.023925795 0.842553718 0.247144159 0.116587209 0.492035368 2.383298278 0.045574963 0.05449289 1.22E-06 5.914268744 -0.181372077 SSFYVNGLTLGGQK ddPTM_HeLa_A486_30min_R1 3 SSFYVNGLTLGGQK 14 0 P07737;K7EJ44;I3L3D5 P07737 PFN1 Profilin-1 0 0 ;; ;; 290.28 7.35E-65 406630000 636770 914070 598500 363570 1099480 1003640 1192690 1151970 905190 1243420 FALSE FALSE TRUE 592135.7113 841635.7642 830255.2284 846409.3338 961572.9662 879821.1011 894266.347 889691.5783 983652.598 932059.5387 0.635298161 0.90298498 0.890774885 0.908106509 1.031664745 0.943953755 0.959451955 0.954543719 1.055353824 1 19.83006259 -3.659686226 0.914933846 0.978588551 1.42E-28 0.837278707 0.044588221 2.175757038 0.660959588 0.014784956 2.752923995 0.000218934 3.659686226 -0.978588551 SSGEIVYCGQVFEKS(ph)PLR ddPTM_HeLa_A485_30min_R1 6 SSGEIVYCGQVFEKSPLR 18 1 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 1 0 SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR ;;;;; 240.96 1.17E-45 7326640000 2576820 2108100 2005432 3635060 3899510 2236790 3517850 2916120 2476850 4749110 TRUE FALSE FALSE 3150024.719 2354623.957 2747324.75 3833634.123 3511261.092 2353904.866 2766232.609 2200936.998 2973931.076 3565244.278 0.883536856 0.660438324 0.770585277 1.075279511 0.984858489 0.66023663 0.775888661 0.617331332 0.834145109 1 21.7655695 -6.268583073 24.94240233 0.753501582 0.868355471 0.091650025 0.142974218 1241.502902 4334727.587 0.052075412 0.046900259 5.39E-07 6.268583073 0.11485389 SSGEIVYCGQVFEKS(ph)PLR ddPTM_HeLa_A486_30min_R1 6 SSGEIVYCGQVFEKSPLR 18 1 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 1 0 SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR ;;;;; 284.21 8.35E-70 7613950000 4347950 4574130 2855160 2576240 4947660 4892640 5948000 5545850 3840120 5683260 TRUE FALSE FALSE 4043181.158 4211659.28 3960754.416 5997616.916 4327078.348 4289035.822 4459747.488 4283181.02 4172984.694 4260134.704 0.949073548 0.988621152 0.929725159 1.407846778 1.015713973 1.006784085 1.046855979 1.005409762 0.979542898 1 22.02246762 -6.997743393 1.419045193 0.992569577 1.05929273 0.037380613 0.126438477 1.811806948 7.011552376 0.093917385 0.044540868 1.01E-07 6.997743393 0.066723153 SSGFGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SSGFGSPR 8 0 A1L390-3;A1L390;A1L390-2;G3V311;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SSGFGS(1)PR;SSGFGS(1)PR;SSGFGS(1)PR;S(0.001)S(0.006)GFGS(0.992)PR ;;; 92.239 0.0035747 1615860000 1568100 2041920 1808280 1762890 2721600 1920430 2426100 2866270 1904210 2396610 TRUE FALSE FALSE 1916918.435 2280704.782 2477238.021 1859192.217 2450627.948 2020980.745 1907743.916 2163312.788 2286367.481 1799179.233 1.065440507 1.267636231 1.376871173 1.033355756 1.362081055 1.123279275 1.060341227 1.202388705 1.27078361 1 20.77890748 SSGFGS(ph)PR ddPTM_HeLa_A486_30min_R1 5 SSGFGSPR 8 0 A1L390-3;A1L390;A1L390-2;G3V311;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.009)SGFGS(0.991)PR;S(0.19)S(0.005)GFGS(0.805)PR;SSGFGS(1)PR;SSGFGS(1)PR;SS(0.001)GFGS(0.998)PR ;;;; 85.733 0.0047977 2690300000 3548570 3800290 3193720 1270286 4459910 3566800 4065060 4081400 3305060 4037130 TRUE FALSE FALSE 3299833.568 3499141.18 4430413.915 2957290.005 3900506.501 3126764.481 3047938.992 3152154.316 3591545.262 3026206.371 1.090419213 1.156279761 1.464015791 0.977226812 1.288909619 1.033229099 1.007181474 1.041619087 1.186814388 1 21.52907894 -6.281397983 24.47800015 1.05345828 1.196004224 0.233672885 0.128212314 964.7216001 1183167.761 0.044334162 0.039155721 5.23E-07 6.281397983 0.142545944 SSGGGYS(ph)GDR ddPTM_HeLa_A485_30min_R1 3 SSGGGYSGDR 10 0 Q92804-2;Q92804;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 1 0 S(0.004)S(0.005)GGGYS(0.991)GDR;S(0.005)S(0.032)GGGY(0.001)S(0.962)GDR;SSGGGYS(0.999)GDR ;; 83.081 0.0056879 1632000000 793750 1084880 901940 991350 1095940 925440 1244500 1147150 958430 1326630 TRUE FALSE FALSE 970316.9491 1211747.279 1235605.139 1045504.94 986824.3655 973894.6074 978602.4084 865809.6638 1150778.11 995925.5558 0.974286626 1.216704674 1.240660139 1.049782219 0.990861576 0.97787892 0.982605982 0.869351789 1.155486073 1 19.92567838 -5.490937176 5.079661701 0.989865758 1.151649482 0.334387015 0.092733425 0.201164068 13.55229094 0.026344864 0.037966024 3.23E-06 5.490937176 0.161783724 SSGGGYS(ph)GDR ddPTM_HeLa_A486_30min_R1 2 SSGGGYSGDR 10 0 Q92804-2;Q92804;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 1 0 SSGGGYS(1)GDR;SSGGGYS(1)GDR ; 157.22 1.50E-06 1748420000 1222700 1105640 933310 387030 1073050 1279190 1332480 1103310 1212120 1366920 TRUE FALSE FALSE 1136995.044 1018025.06 1294712.627 901025.3994 938458.0632 1121376.544 999079.4105 852110.3981 1317187.538 1024634.335 1.109659325 0.993549626 1.26358505 0.87936288 0.915895585 1.094416325 0.975059469 0.831623897 1.285519617 1 19.96667771 -5.274716943 24.97187175 0.990109533 1.109393179 0.151435829 0.133625048 1447.296347 2722009.594 0.03645023 0.054403066 5.31E-06 5.274716943 0.119283646 SSGGREDLES(ph)SGLQR ddPTM_HeLa_A485_30min_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 SSGGREDLES(0.5)S(0.5)GLQR 183.7 1.08E-16 814440000 539600 589770 575340 661710 1069000 615850 886130 974810 676450 898190 TRUE FALSE FALSE 659632.1584 658738.4712 788182.2079 697857.5418 962566.6065 648094.9537 696801.0865 735736.3191 812207.3102 674287.763 0.978265059 0.97693968 1.16891074 1.034955074 1.427530884 0.96115485 1.033388302 1.091131056 1.20454108 1 19.36300489 -4.748162232 24.26550245 1.118321286 0.977602205 0.159513514 0.126177919 290.6131387 531114.7632 0.031758636 0.082869749 1.79E-05 4.748162232 -0.140719081 SSGGREDLES(ph)SGLQR ddPTM_HeLa_A486_30min_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 SSGGREDLES(0.896)S(0.104)GLQR 161.08 9.67E-11 674960000 539520 640830 538860 239460 714040 620500 725450 752410 529110 654740 TRUE FALSE FALSE 501702.4341 590048.2969 747521.0232 557474.9816 624478.445 543949.0188 543934.737 581102.668 574973.6808 490788.8424 1.022236837 1.202244725 1.523101095 1.135875418 1.272397396 1.10831578 1.108286681 1.184017683 1.17152965 1 18.90474293 -6.265934275 24.81188393 1.125547105 1.240488204 0.168605119 0.127600323 696.0066646 3841947.376 0.045139204 0.041220888 5.42E-07 6.265934275 0.114941099 SSGGREDLESS(ph)GLQR ddPTM_HeLa_A486_30min_R1 1 SSGGREDLESSGLQR 15 1 Q9UK76;J3KT51;Q9UK76-2;Q9UK76-3;J3KSH8 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 SSGGREDLES(0.208)S(0.792)GLQR 140.32 9.49E-07 2233200000 937330 920640 862000 352970 1166400 1005500 1178600 1255800 783730 1194400 TRUE FALSE FALSE 871628.0074 847685.1335 1195789.485 821731.9981 1020099.236 881451.6332 883701.814 969881.7539 851664.3474 895314.4658 0.973543979 0.946801561 1.33560836 0.917813829 1.139375353 0.984516242 0.987029527 1.083286142 0.951246048 1 19.77203497 -6.325893512 24.99982654 1.005534325 1.063315198 0.065785376 0.115126482 702.9196259 272639.051 0.039882029 0.035172655 4.72E-07 6.325893512 0.057780873 SSGHS(ph)SSELS(ph)PDAVEK ddPTM_HeLa_A485_30min_R1 1 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SSGHS(0.869)S(0.13)S(0.002)ELS(0.999)PDAVEK 233.12 1.17E-34 396800000 491060 688260 599070 306400 1022300 634500 969900 1024900 688350 754840 TRUE FALSE FALSE 600294.6029 768746.0199 820690.9224 323137.8562 920516.2225 667721.4389 762672.9416 773541.668 826495.5311 566672.2798 1.059332924 1.356597186 1.448263753 0.570237627 1.624424302 1.178320279 1.345880095 1.36506001 1.458507078 1 19.11215511 SSGHS(ph)SSELS(ph)PDAVEK ddPTM_HeLa_A486_30min_R1 1 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SSGHS(0.882)S(0.111)S(0.008)ELS(0.999)PDAVEK 321.09 2.79E-78 467840000 724350 747320 498910 25147 825390 676480 791480 755930 625260 357880 TRUE FALSE FALSE 673576.8055 688099.6415 692101.3133 58543.48686 721861.8897 593022.7755 593443.3326 583821.2408 679458.0402 268264.5186 2.510868038 2.565004292 2.57992118 0.218230451 2.69085861 2.210589677 2.212157372 2.176289447 2.532791305 1 18.03329673 SSGHSSSELS(ph)PDAVEK ddPTM_HeLa_A485_30min_R1 7 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSGHSSSELS(1)PDAVEK;SSGHSSSELS(1)PDAVEK;SSGHSSSELS(1)PDAVEK;SSGHSSS(0.001)ELS(0.999)PDAVEK;S(0.024)S(0.029)GHS(0.029)S(0.029)S(0.029)ELS(0.859)PDAVEK;SSGHSSS(0.001)ELS(0.999)PDAVEK;SSGHSSS(0.007)ELS(0.993)PDAVEK ;;;;;; 280.69 1.04E-58 5238410000 1394600 2557150 2309650 705487 3635050 2069100 2343010 2763240 2278980 1339798 TRUE FALSE FALSE 1704823.959 2856186.448 3164085.648 744025.9684 3273131.659 2177434.877 1842406.773 2085551.057 2736350.382 1005811.016 1.694974436 2.839684994 3.145805323 0.739727401 3.254221327 2.164854871 1.831762373 2.073501905 2.720541274 1 19.93992783 -10.5917802 2.825501013 0.910325698 2.277787646 0.220013447 0.719538912 29558575.42 28932695.2 19695396.06 0.175911263 2.56E-11 10.5917802 1.367461949 SSGHSSSELS(ph)PDAVEK ddPTM_HeLa_A486_30min_R1 4 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSGHS(0.002)S(0.01)S(0.001)ELS(0.987)PDAVEK;S(0.04)S(0.04)GHS(0.028)S(0.028)S(0.033)ELS(0.83)PDAVEK;SSGHSSSELS(1)PDAVEK;SSGHSSSELS(1)PDAVEK ;;; 411.66 1.59E-152 3001070000 2461980 2632160 2151800 125848.6 3316040 1658880 1857431 1892330 2341240 625843 TRUE FALSE FALSE 2289407.916 2423578.055 2985034.587 292981.9008 2900111.342 1454224.252 1392682.118 1461487.768 2544180.568 469127.8392 4.880136552 5.166135651 6.362944889 0.624524653 6.181921216 3.099846418 2.968662274 3.115329439 5.423213793 1 18.83962159 -7.197151531 0.120815863 4.75E-16 7.080590621 0.241315775 1.684845447 11.70759332 1.334394643 32.94370693 37.39520605 6.35E-08 7.197151531 7.080590621 SSGLS(ph)TPVPPSAGHLAHVR ddPTM_HeLa_A486_30min_R1 1 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 S(0.026)S(0.026)GLS(0.806)T(0.142)PVPPSAGHLAHVR 108.71 4.50E-05 137160000 108980 102290 121290 26462 199600 109120 152770 132540 96055 93196 TRUE FALSE FALSE 101341.0648 94184.16787 168256.7363 61604.87332 174564.3068 95657.88385 114545.3302 102363.5353 104381.1247 69859.115 1.450649135 1.348201561 2.408515142 0.881844457 2.498805014 1.369297104 1.639661913 1.465285315 1.494166148 1 16.09216075 -8.310307351 0.753009444 0.998423878 1.676241587 0.154079257 0.458716111 2.067059907 2.293788961 0.436552612 0.155957479 4.89E-09 8.310307351 0.677817709 SSGLST(ph)PVPPSAGHLAHVR ddPTM_HeLa_A485_30min_R1 2 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 SSGLS(0.048)T(0.952)PVPPSAGHLAHVR;SSGLS(0.04)T(0.96)PVPPSAGHLAHVR ; 109.85 0.00010904 1353370000 293180 572310 527600 190531 762900 491990 733920 846650 448530 431240 TRUE FALSE FALSE 358396.8795 639236.6761 722781.1953 200939.2261 686942.9973 517749.8356 577111.9964 639007.76 538545.8568 323739.8044 1.107052252 1.974538402 2.232599098 0.620681249 2.121898475 1.599277656 1.782641457 1.973831303 1.663514494 1 18.30447523 SSGLST(ph)PVPPSAGHLAHVR ddPTM_HeLa_A486_30min_R1 3 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 SSGLS(0.054)T(0.946)PVPPSAGHLAHVR;SSGLS(0.018)T(0.982)PVPPSAGHLAHVR;SSGLS(0.037)T(0.962)PVPPSAGHLAHVR ;; 97.5 0.00064515 1138390000 426396 438795 425101 74279 748675 340675 514548 507369 406746 320136 TRUE FALSE FALSE 396507.8423 404023.2861 589711.4918 172925.2659 654769.2004 298645.9822 385802.6481 391852.1545 442003.0708 239971.8619 1.65230973 1.683627751 2.457419329 0.720606427 2.7285249 1.244504168 1.607699524 1.632908756 1.841895409 1 17.87250573 -11.38513758 0.316859339 3.11E-14 1.776989109 0.14393583 0.531943065 90.69878349 3.597501605 64.38790376 0.470007809 4.12E-12 11.38513758 1.776989109 SSGNS(ph)PTPVSR ddPTM_HeLa_A485_30min_R1 7 SSGNSPTPVSR 11 0 H0YBT1;O95429-2;O95429 H0YBT1 BAG4 BAG family molecular chaperone regulator 4 1 0 SSGNS(1)PTPVSR;SSGNS(0.999)PT(0.001)PVSR;SSGNS(1)PTPVSR;SSGNS(1)PTPVSR;SSGNS(0.999)PT(0.001)PVSR;S(0.003)S(0.009)GNS(0.984)PT(0.004)PVSR;S(0.005)S(0.024)GNS(0.955)PT(0.016)PVSR ;;;;;; 233.86 4.84E-20 5683293000 2376352 2930646 2701928 2531257 3640353 2701985 3513111 3766409 2602900 3451447 TRUE FALSE FALSE 2904963.304 3273359.556 3701483.604 2669533.16 3277906.673 2843456.757 2762506.135 2842691.287 3125278.155 2591064.782 1.121146536 1.263326019 1.428556951 1.030284221 1.265080941 1.097408593 1.066166371 1.097113166 1.206175228 1 21.30511366 -5.860716868 1.225776185 1.099427504 1.250956813 0.239755477 0.109085873 0.668097411 2.117711856 0.045902566 0.060090103 1.38E-06 5.860716868 0.151529309 SSGNS(ph)PTPVSR ddPTM_HeLa_A486_30min_R1 5 SSGNSPTPVSR 11 0 H0YBT1;O95429-2;O95429 H0YBT1 BAG4 BAG family molecular chaperone regulator 4 1 0 SSGNS(1)PTPVSR;SS(0.001)GNS(0.997)PT(0.003)PVSR;SSGNS(1)PTPVSR;SSGNS(0.999)PT(0.001)PVSR;S(0.01)S(0.058)GNS(0.906)PT(0.027)PVSR ;;;; 225.36 4.77E-18 5115310000 3174188 3311710 2565578 1081980 3582630 3314328 3623379 3626880 2904130 3685306 TRUE FALSE FALSE 2951693.813 3049278.039 3559038.51 2518904.12 3133263.139 2905439.909 2716771.25 2801118.598 3155862.327 2762481.39 1.068493646 1.103818491 1.288348411 0.911826639 1.134220542 1.051750039 0.983453231 1.013986414 1.142401298 1 21.39753332 -5.265914324 24.99995226 1.037346868 1.14858001 0.301675385 0.083175349 490.983631 2742957.648 0.022871048 0.035270071 5.42E-06 5.265914324 0.111233141 SSGNSSSSGSGSGSTSAGSS(ph)SPGAR ddPTM_HeLa_A485_30min_R1 2 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTSAGS(0.106)S(0.447)S(0.447)PGAR;SSGNSSSSGSGSGSTSAGS(0.082)S(0.552)S(0.366)PGAR ; 123.29 8.53E-06 789546000 69763 69438 48483.8 69009 64442 52464 64714 88271 54821 137297 TRUE FALSE FALSE 85281.53867 77558.17007 66419.9752 72778.78693 58025.92821 55210.93392 50887.32524 66622.39885 65823.07185 103071.3847 0.827402668 0.752470439 0.644407518 0.706100798 0.562968358 0.535657245 0.493709533 0.646371435 0.638616354 1 16.65328433 -12.5950521 9.543050636 0.926851817 0.660133373 0 0.144103919 0 0 0 0.032655264 2.54E-13 12.5950521 -0.266718444 SSGNSSSSGSGSGSTSAGSS(ph)SPGAR ddPTM_HeLa_A486_30min_R1 1 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGS(0.002)T(0.002)S(0.002)AGS(0.027)S(0.483)S(0.483)PGAR 66.467 0.012882 512860000 163010 175450 155520 59608 208210 168710 187920 156690 186510 206030 TRUE FALSE FALSE 151583.8408 161546.703 215741.509 138770.4364 182094.3603 147896.2755 140900.4284 121015.1075 202676.837 154438.747 0.981514314 1.046024435 1.396939001 0.898546765 1.179071728 0.957637111 0.912338588 0.783579962 1.312344479 1 17.23667523 -6.279702843 23.9083623 0.974601169 1.102655499 0.080752018 0.175315152 1095.095306 1433562.714 0.060413765 0.053397523 5.25E-07 6.279702843 0.128054329 SSGNSSSSGSGSGSTSAGSS(ph)SPGARR ddPTM_HeLa_A485_30min_R1 1 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTSAGS(0.114)S(0.443)S(0.443)PGARR 112.95 0.00019412 3943900000 21921 34216 19222 16332 32461 29188 39763 68089 21416 39130 TRUE FALSE FALSE 26797.25082 38217.26356 26333.01769 17224.17581 29229.06886 30716.23855 31267.31022 51390.06599 25713.99476 29375.61113 0.912227858 1.300986161 0.896424506 0.586342722 0.995011431 1.045637431 1.064396927 1.749412659 0.875351823 1 14.84233125 -7.012420844 24.31946466 1.268810276 0.962445324 0.137737612 0.269994862 664.5024019 1301062.701 0.119769947 0.073769742 9.72E-08 7.012420844 -0.306364952 SSGNSSSSGSGSGSTSAGSSS(ph)PGAR ddPTM_HeLa_A485_30min_R1 4 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTSAGSSS(1)PGAR;SSGNSSSSGSGSGSTSAGS(0.004)S(0.141)S(0.856)PGAR;SSGNSSSSGSGSGSTSAGSSS(1)PGAR;SSGNSSSSGSGSGSTSAGS(0.001)S(0.103)S(0.896)PGAR ;;; 443.93 6.50E-229 6804640000 3160792 3354723 2435324 3306709 3320202 2437135 3206418 4275934 2671739 6309124 TRUE FALSE FALSE 3863899.276 3747028.673 3336251.69 3487346.14 2989631.031 2564739.62 2521340.6 3227254.482 3207932.511 4736375.498 0.81579243 0.791117316 0.704389188 0.736290047 0.631206506 0.541498372 0.532335454 0.681376399 0.677296915 1 22.17535203 -8.597307861 3.413447853 0.999999967 0.674857593 0.542478957 0.088357146 69.53764405 394.8318476 0.097676956 0.025823761 2.53E-09 8.597307861 -0.325142374 SSGNSSSSGSGSGSTSAGSSS(ph)PGAR ddPTM_HeLa_A486_30min_R1 3 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTSAGSSS(1)PGAR;SSGNSSSSGSGSGSTSAGSSS(1)PGAR;SSGNSSSSGSGSGSTSAGS(0.038)S(0.13)S(0.832)PGAR ;; 438.43 9.46E-229 10242310000 2665200 2590440 2020118 746503 2813500 2441130 2565150 2369343 2753300 2826240 TRUE FALSE FALSE 2478383.243 2385164.1 2802361.79 1737896.71 2460604.595 2139968.2 1923322.339 1829895.321 2991958.261 2118531.108 1.169859264 1.125857483 1.322785292 0.820330985 1.161467295 1.010118847 0.907856548 0.863756644 1.412279597 1 21.01463288 -5.245944221 24.9614331 1.019609534 1.198136344 0.200519469 0.165178701 1317.134684 2121793.356 0.043489047 0.074990339 5.68E-06 5.245944221 0.17852681 SSGNSSSSGSGSGSTSAGSSS(ph)PGARR ddPTM_HeLa_A486_30min_R1 1 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTSAGS(0.001)S(0.062)S(0.937)PGARR 135.51 2.03E-06 2288300000 214930 167930 138440 51992 255690 144340 194540 190550 148610 189600 TRUE FALSE FALSE 199864.5169 154622.6152 192047.6756 121040.0035 223618.976 126532.7983 145864.0344 147165.9247 161491.6345 142122.9259 1.406279217 1.087949845 1.351278651 0.851657132 1.57341945 0.890305329 1.026323047 1.035483359 1.136281381 1 17.11677977 SSGPTS(ph)LFAVTVAPPGAR ddPTM_HeLa_A485_30min_R1 2 SSGPTSLFAVTVAPPGAR 18 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;A0A1W2PP22 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 SSGPT(0.028)S(0.972)LFAVTVAPPGAR;SSGPT(0.06)S(0.94)LFAVTVAPPGAR ; 201.04 3.38E-25 62519000 116421 131546 109216 92553 170095 131784 193480 206840 92797 134075 TRUE FALSE FALSE 142318.4498 146929.1604 149619.5433 97608.93603 153159.7446 138684.0065 152141.4174 156112.1657 111420.5067 100652.57 1.413957436 1.459765612 1.486495013 0.969760991 1.5216675 1.377848638 1.511550251 1.551000295 1.10698124 1 16.61902448 -7.907507956 5.425780735 1.003661819 1.405824193 0.458838146 0.157198437 0.172144159 7.305949366 0.153368825 0.039938211 1.24E-08 7.907507956 0.402162373 SSGPTS(ph)LFAVTVAPPGAR ddPTM_HeLa_A486_30min_R1 4 SSGPTSLFAVTVAPPGAR 18 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;A0A1W2PP22 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 SSGPT(0.039)S(0.961)LFAVTVAPPGAR;SSGPT(0.031)S(0.969)LFAVTVAPPGAR;S(0.009)S(0.009)GPT(0.048)S(0.935)LFAVTVAPPGAR;SSGPT(0.023)S(0.977)LFAVTVAPPGAR ;;; 164.01 4.77E-12 236771000 365594 483960 425741 1169447 618232 702394 931535 933063 433156 1114280 TRUE FALSE FALSE 339967.7485 445609.247 590599.3169 2722531.717 540687.5778 615739.7697 698455.0902 720624.9235 470702.3108 835257.0353 0.407021712 0.533499544 0.707086911 3.259513661 0.647330768 0.737185972 0.836215752 0.862758281 0.563541869 1 19.6718607 SSGPTSLFAVTVAPPGAR ddPTM_HeLa_A485_30min_R1 2 SSGPTSLFAVTVAPPGAR 18 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;A0A1W2PP22 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 258.65 2.61E-46 100375000 55257 63896 65642 58536 91649 64256 81751 88981 57602 93698 FALSE FALSE TRUE 67548.72902 71368.08138 89925.70739 61733.67346 82524.10376 67620.3448 64284.23101 67158.27023 69162.19304 70340.81298 0.960306345 1.014604159 1.278428605 0.877636621 1.173203724 0.961324471 0.913896617 0.954755389 0.983244152 1 16.10207439 -6.471453565 24.92026208 0.95611882 1.06088685 0.178304313 0.104987896 559.0229235 270898.439 0.035789488 0.031563 3.38E-07 6.471453565 0.10476803 SSGPTSLFAVTVAPPGAR ddPTM_HeLa_A486_30min_R1 2 SSGPTSLFAVTVAPPGAR 18 0 Q00839-2;Q00839;A0A1W2PPS1;A0A1X7SBS1;A0A1W2PP35;A0A1W2PP22 Q00839-2 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 275.35 8.17E-58 89080000 60231 61853 48093 21473 71559 56555 72280 68073 57189 68992 FALSE FALSE TRUE 56009.11793 56951.54302 66715.89758 49990.22919 62583.40296 49577.81911 54194.7795 52574.26392 62146.18857 51715.95414 1.083014301 1.101237403 1.290044797 0.966630705 1.210137258 0.958656181 1.047931541 1.016596615 1.201683109 1 15.65832179 -6.258984971 24.99867302 1.046195658 1.12839479 0.158058402 0.098300437 453.0286608 4614190.143 0.032153892 0.030707272 5.51E-07 6.258984971 0.082199132 SSGPYGGGGQYFAK(ac)PR ddPTM_HeLa_A485_30min_R1 2 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-2;P09651;P09651-3;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 ; SSGPYGGGGQYFAK(1)PR;SSGPYGGGGQYFAK(1)PR 322.23 2.97E-83 444000000 74321 112953 116704 86085 141827 93034 143112 153975 88616 131181 FALSE TRUE FALSE 90853.45005 126161.8708 159877.6661 90787.60557 127706.2059 97905.11638 112534.9521 116212.3898 106400.4184 98479.99091 0.922557458 1.281091414 1.623453298 0.92188885 1.296773128 0.994162525 1.142718953 1.180060932 1.080426769 1 16.58754301 -5.327898129 24.9999989 1.102575589 1.276261894 0.173056029 0.186122118 342.4525979 128820.4237 0.051917628 0.077006295 4.70E-06 5.327898129 0.173686306 SSGPYGGGGQYFAK(ac)PR ddPTM_HeLa_A486_30min_R1 2 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-2;P09651;P09651-3;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 ; SSGPYGGGGQYFAK(1)PR;SSGPYGGGGQYFAK(1)PR 308.6 7.05E-82 376600000 114025 105418 103351 40107 112759 110891 129993 136930 103241 137617 FALSE TRUE FALSE 106032.4363 97064.29375 143371.275 93371.1229 98615.71478 97210.39588 97467.37647 105754.0282 112190.013 103156.8075 1.027876288 0.940939296 1.389838233 0.905137772 0.95597874 0.942355607 0.944846771 1.025177405 1.087567711 1 16.6544795 SSGQPVTFTDIFGMLIGETLIHNR ddPTM_HeLa_A485_30min_R1 1 SSGQPVTFTDIFGMLIGETLIHNR 24 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 0 0 195.24 2.52E-35 36427000 30240 35567 37528 32510 43938 33601 51918 43890 25802 48256 FALSE FALSE TRUE 36966.78367 39726.25126 51411.16887 34285.93898 39563.37844 35360.2964 40825.29517 33125.90868 30980.22473 36226.66729 1.020430154 1.096602427 1.419152595 0.946428185 1.09210649 0.97608472 1.126940407 0.914406739 0.855177333 1 15.14476447 -6.489155905 0.767741527 0.928433623 1.146078858 0.260682364 0.128045448 0.917650529 1.132630884 0.099067004 0.077043163 3.24E-07 6.489155905 0.217645234 SSGQPVTFTDIFGMLIGETLIHNR ddPTM_HeLa_A486_30min_R1 2 SSGQPVTFTDIFGMLIGETLIHNR 24 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 0 0 ; ; 216.87 1.14E-42 22945300 41494.1 40764.3 30825.7 16493 50301.6 40217 45094.1 44779 39798.9 45281 FALSE FALSE TRUE 38585.57787 37533.98841 42762.23658 38396.53751 43992.30428 35255.43544 33811.07922 34583.79922 43248.7007 33942.34287 1.136797716 1.105816076 1.25984929 1.131228261 1.296089208 1.038685973 0.996132746 1.018898411 1.274181363 1 15.05079853 -6.29510733 24.94115607 1.062420398 1.182568663 0.298034258 0.09223424 816.6219298 604949.3385 0.032272802 0.028463543 5.07E-07 6.29510733 0.120148265 SSGRNS(ph)PSAASTSSNDSK ddPTM_HeLa_A485_30min_R1 2 SSGRNSPSAASTSSNDSK 18 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 SSGRNS(0.974)PS(0.026)AASTSSNDSK;S(0.177)S(0.177)GRNS(0.518)PS(0.126)AAS(0.001)TSSNDSK ; 249.12 3.40E-46 940553000 386208 362695 254373 525199 468903 417315 616953 545277 357448 731256 TRUE FALSE FALSE 472118.6372 405109.0252 348476.158 553889.2915 422217.3709 439164.9681 485135.9515 411546.9608 429184.5349 548967.337 0.860012255 0.737947411 0.634784867 1.008965842 0.769112008 0.799983785 0.88372462 0.749674768 0.781803408 1 19.06636079 -11.12003 2.238386464 1.367894496 0.801830002 0.281606476 0.094433751 9995498.352 2549087.945 18694639.77 0.023451725 7.59E-12 11.12003 -0.566064494 SSGRNS(ph)PSAASTSSNDSK ddPTM_HeLa_A486_30min_R1 4 SSGRNSPSAASTSSNDSK 18 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 SSGRNS(0.761)PS(0.239)AASTSSNDSK;SSGRNS(0.933)PS(0.067)AASTSSNDSK;S(0.002)S(0.005)GRNS(0.942)PS(0.051)AASTSSNDSK;SSGRNS(0.958)PS(0.042)AASTSSNDSK ;;; 235.76 1.70E-45 2925200000 1800010 1484530 841700 786680 1481230 1788080 2261280 2059040 1327360 2469080 TRUE FALSE FALSE 1673838.594 1366890.436 1167628.782 1831430.797 1295440.321 1567484.869 1695483.827 1590241.541 1442416.634 1850806.297 0.904383455 0.738537814 0.630875734 0.989531319 0.699932955 0.84692 0.916078484 0.859215545 0.779345 1 20.81972248 -14 0.149575626 1.658895197 0.759219887 0.221427977 0.102715846 200.0584227 1.77754443 39.06591538 0.519667012 1.00E-14 14 -0.89967531 SSGS(ph)LGHRPSQEMDK ddPTM_HeLa_A485_30min_R1 2 SSGSLGHRPSQEMDK 15 1 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.252)S(0.252)GS(0.495)LGHRPSQEMDK;S(0.015)S(0.08)GS(0.905)LGHRPSQEMDK ; 97.271 0.00037039 1370630000 591520 597510 491640 581680 969430 632180 1008750 1060900 687670 1073800 TRUE FALSE FALSE 723101.5833 667383.5969 673518.0948 613455.7055 872910.1453 665279.9673 793222.3218 800712.6116 825679.0613 806121.4218 0.897013234 0.827894631 0.835504524 0.760996655 1.08285194 0.825285062 0.983998564 0.993290328 1.024261406 1 19.62063764 -6.336659454 0.740873463 1.012029265 0.835798045 0.389860686 0.079491959 0.705001941 0.836218743 0.057388587 0.052537376 4.61E-07 6.336659454 -0.17623122 SSGS(ph)LGHRPSQEMDK ddPTM_HeLa_A486_30min_R1 3 SSGSLGHRPSQEMDK 15 1 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.062)S(0.155)GS(0.783)LGHRPSQEMDK;S(0.004)S(0.068)GS(0.928)LGHRPSQEMDK;S(0.001)S(0.015)GS(0.984)LGHRPSQEMDK ;; 100.46 0.00027628 936470000 958710 887590 477560 132338 839980 889620 1067140 1005520 806280 890290 TRUE FALSE FALSE 891509.3798 817254.1359 662484.0215 308089.552 734621.8759 779867.7294 800130.2849 776585.0463 876168.9996 667355.5892 1.335883589 1.224615706 0.992700192 0.461657259 1.10079527 1.168593988 1.198956445 1.163675047 1.312896773 1 19.34809616 -5.993068148 24.99199887 1.175799371 0.989021245 0.105518592 0.224584244 400.0346534 1442265.883 0.07572469 0.085676185 1.02E-06 5.993068148 -0.186778125 SSGS(ph)PEPSPAIAK ddPTM_HeLa_A485_30min_R1 2 SSGSPEPSPAIAK 13 0 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 0 SSGS(1)PEPSPAIAK;SS(0.003)GS(0.997)PEPSPAIAK ; 176.25 1.19E-12 645810000 496110 491760 399409 662930 684450 552230 843720 833670 453670 849280 TRUE FALSE FALSE 606467.9579 549267.0543 547167.0099 699144.1873 616303.7548 581143.9089 663452.3294 629211.1254 544717.4077 637570.1258 0.951217652 0.861500613 0.858206788 1.09657614 0.966644656 0.911498022 1.04059507 0.986889285 0.854364697 1 19.28222451 -5.180479593 24.99999998 0.978146565 0.887427377 0.274912711 0.06631068 133.9345985 41356.82915 0.017937559 0.031068783 6.60E-06 5.180479593 -0.090719188 SSGS(ph)PYGGGYGSGGGSGGYGSR ddPTM_HeLa_A485_30min_R1 23 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.002)GS(0.997)PYGGGYGSGGGSGGYGSR;SS(0.005)GS(0.995)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;S(0.004)S(0.012)GS(0.984)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.004)GS(0.994)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.998)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR ;;;;;;;;;;;;;;;;;;;;;; 608 0 89548830000 4433637 6102468.1 5808464 5107458 7698140 5463863.8 7420060 7931881 5446232 7110278 TRUE FALSE FALSE 5419884.255 6816098.66 7957256.544 5386465.498 6931686.152 5749943.26 5834703.565 5986574.748 6539240.807 5337816.55 1.015374771 1.276945095 1.490732488 1.009114017 1.298599547 1.077208856 1.093088065 1.121539995 1.225077847 1 22.34781829 -6.073342679 1.490153902 1.112257654 1.235073615 0.108159256 0.14278254 0.910314094 4.100474691 0.059676874 0.062767115 8.45E-07 6.073342679 0.122815961 SSGS(ph)PYGGGYGSGGGSGGYGSR ddPTM_HeLa_A486_30min_R1 31 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.081)S(0.081)GS(0.837)PYGGGYGSGGGSGGYGSR;S(0.151)S(0.151)GS(0.697)PY(0.001)GGGYGSGGGSGGYGSR;S(0.002)S(0.005)GS(0.993)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.003)S(0.003)GS(0.994)PYGGGYGSGGGSGGYGSR;S(0.002)S(0.007)GS(0.991)PYGGGYGSGGGSGGYGSR;S(0.168)S(0.168)GS(0.659)PY(0.005)GGGYGSGGGSGGYGSR;S(0.005)S(0.016)GS(0.979)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.029)S(0.029)GS(0.941)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.002)GS(0.997)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.048)S(0.145)GS(0.807)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.023)S(0.023)GS(0.953)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGS(0.001)GGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 621.3 0 88586766900 5208175.5 5897398.5 4562208.5 2036995.67 6645176.5 5722755.8 6593137.1 6691382.4 5086815.4 5933366.4 TRUE FALSE FALSE 4843109.292 5430067.165 6328817.811 4742228.864 5811676.5 5016740.374 4943464.462 5167900.699 5527744.655 4447612.834 1.088923311 1.220894751 1.42296959 1.066241384 1.306695685 1.127962474 1.111487139 1.161949318 1.24285653 1 22.08459978 -6.305379316 24.87966523 1.137887647 1.223737825 0.147038828 0.109986092 948.7003451 537170.4508 0.03802073 0.033531237 4.95E-07 6.305379316 0.085850179 SSGS(ph)SPAMETR ddPTM_HeLa_A485_30min_R1 1 SSGSSPAMETR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 S(0.064)S(0.132)GS(0.528)S(0.276)PAMETR 83.137 0.0033573 0 428930 446270 304080 770500 446040 413710 688270 563350 358770 1231300 TRUE FALSE FALSE 524343.9987 498457.3945 416571.8458 812590.464 401630.6915 435371.2159 541215.4919 425187.5292 430771.8482 924359.5704 0.567251117 0.539246209 0.450659959 0.879084817 0.434496168 0.470997683 0.585503206 0.459980664 0.466021949 1 19.81809464 -10.48977053 4.042734072 1.003976331 0.540579236 0.554401413 0.123916489 173001779.5 29913.67165 6403549.357 0.029802328 3.24E-11 10.48977053 -0.463397095 SSGSEGS(ph)SPNWLQALK ddPTM_HeLa_A485_30min_R1 1 SSGSEGSSPNWLQALK 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.008)S(0.008)GS(0.008)EGS(0.489)S(0.489)PNWLQALK 59.185 0.01269 0 42597 43000 35893 43071 53989 41704 56293 61068 38713 56038 TRUE FALSE FALSE 52072.55569 48028.47595 49171.31433 45423.85967 48613.66559 43887.55695 44265.54068 46090.97725 46482.344 42068.7579 1.237796367 1.141666128 1.168832093 1.079752813 1.155576442 1.043233961 1.052218865 1.095610604 1.10491363 1 15.3604616 -1 0.248770655 1.039806111 2.18534713 0.684716624 0.037193095 30.20287024 0.409746398 0.047816948 14.45805306 0.1 1 1.14554102 SSGSEGSS(ph)PNWLQALK ddPTM_HeLa_A485_30min_R1 2 SSGSEGSSPNWLQALK 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 SSGSEGS(0.025)S(0.975)PNWLQALK;SSGSEGS(0.025)S(0.975)PNWLQALK ; 222.45 7.83E-34 214998000 627500 593000 487707 693260 883580 673510 925200 1016330 570387 1039950 TRUE FALSE FALSE 767085.2102 662346.1916 668130.1145 731131.0384 795607.6728 708773.9422 727523.4618 767073.474 684858.439 780709.6039 0.982548705 0.848389963 0.855798508 0.93649551 1.019082728 0.907858618 0.931874615 0.982533672 0.877225585 1 19.57442649 -5.50280437 23.60414862 0.951525937 0.891741267 0.194935977 0.052063321 572.9677259 673714.1599 0.014409271 0.021032109 3.14E-06 5.50280437 -0.059784669 SSGSEGSS(ph)PNWLQALK ddPTM_HeLa_A486_30min_R1 1 SSGSEGSSPNWLQALK 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 SSGSEGS(0.026)S(0.974)PNWLQALK 318.09 2.09E-78 124510000 200560 181100 108250 90810 204120 222920 212850 228680 150350 204340 TRUE FALSE FALSE 186501.7797 166748.9764 150167.299 211410.2693 178517.3663 195418.3969 159592.6787 176614.556 163382.4591 153171.934 1.217597603 1.088639231 0.980383907 1.380215447 1.165470472 1.27581073 1.041918546 1.153047765 1.066660548 1 17.22479245 -7.833306621 1.02923225 1.002648545 1.171211292 0.210429102 0.10722406 0.850117228 1.961104542 0.103338953 0.035047863 1.47E-08 7.833306621 0.168562747 SSGTAS(ph)SVAFT(ph)PLQGLEIVNPQAAEKK ddPTM_HeLa_A485_30min_R1 2 SSGTASSVAFTPLQGLEIVNPQAAEKK 27 1 E7EVX8;Q8WWY3 E7EVX8 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 2 0 S(0.073)S(0.081)GT(0.102)AS(0.602)S(0.144)VAFT(0.999)PLQGLEIVNPQAAEKK;S(0.011)S(0.012)GT(0.015)AS(0.937)S(0.025)VAFT(1)PLQGLEIVNPQAAEKK ; 129.46 5.12E-06 240240000 228480 132445 86036 197723 244790 186265 447140 431540 124998 255630 TRUE FALSE FALSE 279304.5878 147933.2906 117864.2967 208524.1068 220417.8481 196017.5474 351604.8862 325704.1384 150083.9521 191906.1455 1.455422842 0.770862706 0.61417677 1.086594211 1.148571076 1.021424024 1.832171061 1.697205358 0.782069546 1 17.55004139 -6.567741402 24.99531819 1.391796261 0.993424891 0.146254013 0.353840598 205.652945 114578.3016 0.136477561 0.105715112 2.71E-07 6.567741402 -0.39837137 SSGTAS(ph)SVAFT(ph)PLQGLEIVNPQAAEKK ddPTM_HeLa_A486_30min_R1 1 SSGTASSVAFTPLQGLEIVNPQAAEKK 27 1 E7EVX8;Q8WWY3 E7EVX8 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 2 0 SSGT(0.016)AS(0.826)S(0.158)VAFT(1)PLQGLEIVNPQAAEKK 156.67 9.91E-10 81530000 81826 93211 44529 69074 86648 109330 171660 146170 51621 124890 TRUE FALSE FALSE 76090.41995 85824.62089 61771.82133 160807.7628 75779.79988 95841.97619 128708.8524 112890.2819 56095.54984 93616.7311 0.812786551 0.916765837 0.659837409 1.717724609 0.809468553 1.023769737 1.374848821 1.205877203 0.599204322 1 16.51447877 SSGTPGCSSGTERPQS(ph)PGSSK ddPTM_HeLa_A485_30min_R1 1 SSGTPGCSSGTERPQSPGSSK 21 1 Q8IYD8-2;Q8IYD8-3;Q8IYD8 Q8IYD8-2 FANCM Fanconi anemia group M protein 1 0 SSGTPGCSSGTERPQS(0.999)PGS(0.001)SK 135.12 3.20E-07 224100000 116080 101540 88354 158740 155790 117260 180760 146600 100610 211340 TRUE FALSE FALSE 141901.5955 113414.2197 121039.8213 167411.5642 140279.0006 123399.5523 142139.1493 110646.1201 120801.5042 158656.8274 0.89439325 0.714839831 0.762903326 1.055180335 0.884166177 0.777776502 0.895890531 0.697392743 0.761401234 1 17.27555008 -9.462939997 14.06159632 0.999998336 0.827058272 0.204219486 0.102388667 0 0 0.103767948 0.025167424 3.44E-10 9.462939997 -0.172940065 SSGTPGCSSGTERPQS(ph)PGSSK ddPTM_HeLa_A486_30min_R1 2 SSGTPGCSSGTERPQSPGSSK 21 1 Q8IYD8-2;Q8IYD8-3;Q8IYD8 Q8IYD8-2 FANCM Fanconi anemia group M protein 1 0 SSGTPGCSSGTERPQS(1)PGSSK;SSGTPGCSSGTERPQS(1)PGSSK ; 278.95 5.13E-73 406960000 226225 200321 109779 87681 194087 218530 278642 259528 182722 286831 TRUE FALSE FALSE 210367.7957 184446.8344 152288.3688 204125.7992 169742.7987 191569.9905 208922.8244 200439.1399 198560.4901 215006.6506 0.978424598 0.857865716 0.708296084 0.949392954 0.789476968 0.89099565 0.971704009 0.932246232 0.923508596 1 17.71402176 -6.576493774 5.123533502 0.950177796 0.852349091 0.28965194 0.073545901 0.26780669 15.01469182 0.028333055 0.021941183 2.65E-07 6.576493774 -0.097828705 SSGVVPQS(ph)APPVPTASSR ddPTM_HeLa_A485_30min_R1 1 SSGVVPQSAPPVPTASSR 18 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 SSGVVPQS(0.999)APPVPTASSR 67.299 0.0079123 188990000 119360 92952 87077 108080 117690 101270 168140 139080 66463 123100 TRUE FALSE FALSE 145911.2202 103821.9278 119290.4059 113984.1367 105972.3704 106572.3406 132215.5154 104970.4119 79801.51447 92413.43549 1.578896179 1.123450581 1.290834014 1.233415208 1.146720385 1.153212626 1.430695815 1.135878256 0.863527192 1 16.49581499 -1 0.118268466 0.891932034 2.453234001 0.404734483 0.149242642 115.2194716 0.941286636 1.115353162 29.58585549 0.1 1 1.561301966 SSGVVPQS(ph)APPVPTASSR ddPTM_HeLa_A486_30min_R1 1 SSGVVPQSAPPVPTASSR 18 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 SSGVVPQS(1)APPVPTASSR 68.27 0.0073763 163340000 205160 225050 118450 109020 195450 269760 325720 254830 189280 335220 TRUE FALSE FALSE 190779.3434 207216.2184 164317.0122 253804.0696 170934.8385 236479.7539 244221.4109 196810.7719 205686.9428 251278.7301 0.759233953 0.82464687 0.653923283 1.010049953 0.680259879 0.941105337 0.971914379 0.783236893 0.818560897 1 17.93892903 -5.250919774 24.99272043 0.874662441 0.753805932 0.264219826 0.105940886 1107.523553 2631274.216 0.02804426 0.047913004 5.61E-06 5.250919774 -0.120856509 SSHSMT(ph)S(ph)VKR ddPTM_HeLa_A485_30min_R1 1 SSHSMTSVKR 10 1 A0A590UJ18 A0A590UJ18 2 0 S(0.009)S(0.434)HS(0.528)MT(0.538)S(0.492)VKR 42.001 0.023976 70781000 44246 65567 61324 29156 79584 47481 65132 77052 54505 52033 TRUE FALSE FALSE 54088.37005 73234.49029 84010.2995 30748.71845 71660.33752 49967.03174 51216.01612 58154.87619 65443.65355 39062.1307 1.384675364 1.874820676 2.150684 0.787174634 1.834521984 1.279168106 1.311142408 1.488778906 1.67537337 1 15.25348302 -5.238683281 24.99983265 1.37675364 1.810536008 0.283778928 0.334041998 1088.133717 1195421.472 0.087159984 0.15082807 5.77E-06 5.238683281 0.433782368 SSHYGGS(ph)LPNVNQIGSGLAEFQSPLHSPLDSSR ddPTM_HeLa_A485_30min_R1 3 SSHYGGSLPNVNQIGSGLAEFQSPLHSPLDSSR 33 0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 S(0.003)S(0.003)HYGGS(0.995)LPNVNQIGSGLAEFQSPLHSPLDSSR;SSHYGGS(1)LPNVNQIGSGLAEFQSPLHSPLDSSR;S(0.009)S(0.009)HYGGS(0.983)LPNVNQIGSGLAEFQSPLHSPLDSSR ;; 222.12 2.99E-39 877260000 252626.9 527869 497970 168412.2 725451 420465 632893 835364 456618 373427 TRUE FALSE FALSE 308822.8824 589598.6877 682189.8253 177612.132 653222.5512 442479.8972 497670.2403 630489.6692 548257.0443 280338.5213 1.101607017 2.10316686 2.43345018 0.633563062 2.330120556 1.578377082 1.775247433 2.249029731 1.955696426 1 18.09681047 SSHYGGS(ph)LPNVNQIGSGLAEFQSPLHSPLDSSR ddPTM_HeLa_A486_30min_R1 2 SSHYGGSLPNVNQIGSGLAEFQSPLHSPLDSSR 33 0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 S(0.006)S(0.006)HYGGS(0.988)LPNVNQIGSGLAEFQSPLHSPLDSSR;S(0.003)S(0.003)HYGGS(0.995)LPNVNQIGSGLAEFQSPLHSPLDSSR ; 143.54 1.55E-09 652151000 97710 92921 106850 19062.4 136242 75613 85652 102177 101434 50552 TRUE FALSE FALSE 90861.03357 85557.60155 148225.1815 44378.23056 119153.258 66284.63684 64220.96367 78913.52761 110226.3808 37893.45016 2.397803135 2.257846704 3.911630662 1.17113196 3.144428851 1.74923731 1.694777419 2.082511022 2.908850483 1 15.20966088 -5.829926475 1.162709744 1.981103704 2.665395969 0.121873343 0.802138013 1.127290618 3.232736754 0.33638801 0.460951203 1.48E-06 5.829926475 0.684292265 SSILQHERPAS(ph)LYQSSIDR ddPTM_HeLa_A485_30min_R1 1 SSILQHERPASLYQSSIDR 19 1 O94875-11;O94875-9;O94875;O94875-7;H7BZK1 O94875-11 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SSILQHERPAS(1)LYQSSIDR 138.08 7.03E-07 276970000 57215 71560 60946 56293 96154 57913 91228 104610 59855 75217 TRUE FALSE FALSE 69942.27936 79928.31951 83492.46157 59368.14405 86580.57014 60945.23513 71736.39254 78954.23348 71867.34948 56466.78617 1.238644593 1.415492627 1.478611893 1.051381672 1.533300831 1.079311207 1.270417486 1.398242026 1.272736672 1 15.7851149 -8.040123252 21.76611321 0.999999997 1.309240671 0.273742529 0.149649642 1794.664158 973572.2006 0.137551864 0.035515739 9.12E-09 8.040123252 0.309240674 SSILQHERPAS(ph)LYQSSIDR ddPTM_HeLa_A486_30min_R1 2 SSILQHERPASLYQSSIDR 19 1 O94875-11;O94875-9;O94875;O94875-7;H7BZK1 O94875-11 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SSILQHERPAS(1)LYQSSIDR;SSILQHERPAS(1)LYQSSIDR ; 182.67 2.56E-18 454760000 205670 213680 171027 50075 203675 186537 242270 212040 169506 180529 TRUE FALSE FALSE 191253.5951 196747.2186 237253.2347 116577.1307 178128.1823 163523.9615 181651.4835 163763.1208 184198.9166 135323.3634 1.413308023 1.453904291 1.753231879 0.861470834 1.316315069 1.208394156 1.342351232 1.210161474 1.361176016 1 17.04605141 -1 0.124284346 1.006514731 2.56471758 0.225138353 0.205665532 145.6502472 1.238741008 1.294889135 39.49001851 0.1 1 1.558202849 SSILQHERPPPLPTT(ph)PTPVPR ddPTM_HeLa_A485_30min_R1 2 SSILQHERPPPLPTTPTPVPR 21 1 O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SSILQHERPPPLPT(0.006)T(0.994)PTPVPR;SSILQHERPPPLPT(0.033)T(0.965)PT(0.002)PVPR ; 110.61 9.29E-05 374940000 212267 326260 288000 187075 362530 246900 362000 362570 259360 291190 TRUE FALSE FALSE 259485.0618 364413.2689 394543.1847 197294.4336 326435.2403 259827.3022 284655.7427 273649.139 311411.173 218601.692 1.187022202 1.667019435 1.804849638 0.902529307 1.493287803 1.188587791 1.302166238 1.251816199 1.424559756 1 17.73794504 -5.249622266 24.95851805 1.246862461 1.564369294 0.314116907 0.221143835 904.7206119 1910826.241 0.057810241 0.099092579 5.63E-06 5.249622266 0.317506833 SSILQHERPPPLPTT(ph)PTPVPR ddPTM_HeLa_A486_30min_R1 1 SSILQHERPPPLPTTPTPVPR 21 1 O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SSILQHERPPPLPT(0.078)T(0.919)PT(0.003)PVPR 86.131 0.0015694 143630000 160650 160910 125470 31755 186210 134140 160230 164380 140970 144430 TRUE FALSE FALSE 149389.2646 148158.9056 174055.3442 73927.24481 162853.8055 117591.1706 120138.7593 126954.2624 153189.3931 108263.7879 1.379863641 1.368499185 1.607696789 0.682843693 1.50423155 1.086154225 1.109685534 1.172638283 1.414964284 1 16.72419125 SSINSVDGES(ph)PNGSSDR ddPTM_HeLa_A485_30min_R1 1 SSINSVDGESPNGSSDR 17 0 Q9NUY8-2;Q9NUY8;E9PGE5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 1 0 SSINSVDGES(1)PNGSSDR 374.45 7.94E-120 371300000 344730 452080 416640 342480 600490 364110 470110 572690 407840 503940 TRUE FALSE FALSE 421413.9992 504946.8234 570772.4738 361188.8152 540703.1072 383174.2366 369667.1581 432236.8796 489689.7471 378317.0323 1.113917596 1.334718715 1.508714716 0.954725229 1.429232789 1.012838979 0.977135911 1.142525561 1.294389904 1 18.5292362 -6.279751622 24.83234869 1.087520783 1.26789367 0.228952311 0.167784459 1227.660389 1664765.425 0.058898485 0.052043832 5.25E-07 6.279751622 0.180372887 SSINSVDGES(ph)PNGSSDR ddPTM_HeLa_A486_30min_R1 2 SSINSVDGESPNGSSDR 17 0 Q9NUY8-2;Q9NUY8;E9PGE5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 1 0 SSINSVDGES(1)PNGSSDR;SSINSVDGES(1)PNGSSDR ; 302.26 9.55E-69 474210000 707250 791820 641160 273660 945140 703360 880270 945600 708970 908260 TRUE FALSE FALSE 657675.4272 729073.2994 889434.3229 637094.31 826591.7281 616586.5944 660017.1355 730307.5223 770424.0904 680825.7842 0.965996651 1.070866169 1.306405168 0.935767012 1.21410168 0.905645187 0.969436162 1.072679001 1.131602399 1 19.37692615 -6.262563225 24.99898656 1.01751272 1.099580462 0.114254871 0.11514675 253.4602781 5637925.272 0.039553094 0.036750069 5.46E-07 6.262563225 0.082067742 SSKAS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_HeLa_A485_30min_R1 3 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 S(0.023)S(0.066)KAS(0.961)LGS(0.95)LEGEAEAEASSPK;S(0.346)S(0.405)KAS(0.428)LGS(0.821)LEGEAEAEASSPK;S(0.306)S(0.334)KAS(0.609)LGS(0.752)LEGEAEAEASSPK ;; 185.21 3.52E-19 1288210000 713750 497980 267264 942480 677160 697620 1156700 1171400 445780 1373440 TRUE FALSE FALSE 872521.2251 556214.4291 366136.0754 993965.2959 609739.5727 734146.3045 909561.5956 884112.3133 535243.9571 1031066.684 0.846231615 0.53945534 0.355104166 0.9640165 0.591367738 0.712026017 0.882155936 0.857473456 0.519116722 1 19.97570621 -5.267226894 24.99521545 0.775895502 0.576182873 0.214932693 0.181872154 743.8185989 3212416.954 0.050140763 0.076716502 5.40E-06 5.267226894 -0.19971263 SSKAS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_HeLa_A486_30min_R1 2 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 S(0.438)S(0.481)KAS(0.451)LGS(0.63)LEGEAEAEASSPK;S(0.3)S(0.36)KAS(0.41)LGS(0.929)LEGEAEAEASSPK ; 138.61 3.26E-07 716230000 964250 756800 284320 576080 756370 1063800 1496900 1327180 621490 1668180 TRUE FALSE FALSE 896661.0544 696828.4118 394416.3184 1341143.353 661499.0217 932559.1719 1122359.787 1025010.086 675361.2536 1250456.87 0.717066758 0.557259053 0.315417771 1.07252268 0.529005868 0.74577476 0.897559775 0.819708469 0.540091602 1 20.25402387 -5.25119249 24.91583407 0.783584936 0.532649009 0.301449104 0.187603264 898.0826902 2183729.342 0.049719326 0.084897472 5.61E-06 5.25119249 -0.250935928 SSLFPFEDAFLDDSHGDQALSSGLS(ph)SPTR ddPTM_HeLa_A485_30min_R1 1 SSLFPFEDAFLDDSHGDQALSSGLSSPTR 29 0 Q8NE35-2 Q8NE35-2 1 0 SSLFPFEDAFLDDSHGDQALS(0.064)S(0.053)GLS(0.376)S(0.376)PT(0.131)R 66.959 0.0048219 78818000 19279 26741 25268 19963 34906 26174 27459 34084 21595 31877 TRUE FALSE FALSE 23567.54704 29868.12733 34615.68469 21053.52814 31430.63608 27544.43017 21592.16033 25724.84556 25928.91842 23930.65055 0.984826843 1.2481118 1.446499944 0.879772495 1.313405 1.151010505 0.902280541 1.074974769 1.083502446 1 14.546572 -6.581697238 10.4385139 1.021868946 1.182814881 0.192258553 0.155974862 0.789815272 135.5572889 0.058755629 0.045492708 2.62E-07 6.581697238 0.160945935 SSLFPFEDAFLDDSHGDQALSSGLS(ph)SPTR ddPTM_HeLa_A486_30min_R1 1 SSLFPFEDAFLDDSHGDQALSSGLSSPTR 29 0 Q8NE35-2 Q8NE35-2 1 0 SSLFPFEDAFLDDSHGDQALSSGLS(0.446)S(0.446)PT(0.108)R 144.24 2.65E-09 85339000 37399 34281 30544 10078 41794 30551 37982 40851 33681 37480 TRUE FALSE FALSE 34777.52323 31564.44871 42371.4548 23462.09331 36551.80681 26781.92824 28478.50187 31550.11907 36600.4962 28094.76405 1.237864934 1.123499335 1.508161974 0.835105548 1.301018465 0.953271157 1.013658695 1.122989288 1.302751507 1 14.77801366 -5.25919151 24.99995822 1.082388405 1.273207785 0.263586282 0.163157712 301.0713817 3348376.192 0.043453679 0.070795504 5.51E-06 5.25919151 0.19081938 SSLFPFEDAFLDDSHGDQALSSGLSS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 SSLFPFEDAFLDDSHGDQALSSGLSSPTR 29 0 Q8NE35-2 Q8NE35-2 1 0 SSLFPFEDAFLDDSHGDQALS(0.001)S(0.003)GLS(0.135)S(0.814)PT(0.047)R 119.96 4.00E-05 61307000 16478 26525 23649 18599 31020 23444 32279 36455 21641 25524 TRUE FALSE FALSE 20143.47425 29626.86801 32397.74922 19615.01627 27931.53988 24671.49159 25382.32795 27514.35409 25984.1502 19161.33653 1.051256222 1.546179619 1.690787548 1.023676832 1.457703111 1.287566321 1.324663752 1.435930841 1.356071908 1 14.22591057 -8.093729227 19.16214223 0.999999999 1.361745947 0.228935335 0.193537498 10757.60584 2199304.302 0.182024383 0.046998163 8.06E-09 8.093729227 0.361745948 SSLFPFEDAFLDDSHGDQALSSGLSS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 SSLFPFEDAFLDDSHGDQALSSGLSSPTR 29 0 Q8NE35-2 Q8NE35-2 1 0 SSLFPFEDAFLDDSHGDQALSSGLS(0.06)S(0.93)PT(0.01)R 191.72 5.22E-21 83394000 43586 46139 36021 10182 53177 36082 43173 58194 37225 40505 TRUE FALSE FALSE 40530.84648 42482.7776 49969.29588 23704.21057 46507.0448 31630.56969 32370.65876 44944.49657 40451.69297 30362.28436 1.334907677 1.399195696 1.645768655 0.780712357 1.531737344 1.041771736 1.066147013 1.480273883 1.332300709 1 14.88999272 -5.210039641 24.99998456 1.200779908 1.45388102 0.240976817 0.227836107 561.269834 272991.282 0.060245098 0.104347478 6.17E-06 5.210039641 0.253101112 SSLFPIDDGLLDDGHSDQVGVLNS(ph)PTCYSAHQNGER ddPTM_HeLa_A485_30min_R1 2 SSLFPIDDGLLDDGHSDQVGVLNSPTCYSAHQNGER 36 0 A0A5K1VW61;A0A5K1VW79;A0A5K1VW71;A0A5K1VW93;Q7Z5Q1-7;Q7Z5Q1-5;Q7Z5Q1-4;Q7Z5Q1-6;Q7Z5Q1-3;Q7Z5Q1;Q7Z5Q1-8;Q7Z5Q1-9 A0A5K1VW61 CPEB2 Cytoplasmic polyadenylation element-binding protein 2 1 0 SSLFPIDDGLLDDGHSDQVGVLNS(0.931)PT(0.068)CYS(0.001)AHQNGER;SSLFPIDDGLLDDGHSDQVGVLNS(0.732)PT(0.236)CY(0.011)S(0.021)AHQNGER ; 133.07 1.14E-06 124627000 29370 29822 27117 18870.3 38692 25845 30496 34288 24183 26668 TRUE FALSE FALSE 35903.25517 33309.42348 37148.70673 19901.13671 34839.68862 27198.20424 23980.28047 25878.81424 29036.30628 20020.15839 1.793355201 1.663794204 1.855565077 0.994054908 1.740230419 1.358540912 1.197806731 1.292637837 1.450353475 1 14.28916577 -1 0.156075469 1.011674816 4.060484794 0.460883414 0.222352965 59.90658468 0.608243891 0.697646788 41.74593009 0.1 1 3.048809978 SSLFPIDDGLLDDGHSDQVGVLNS(ph)PTCYSAHQNGER ddPTM_HeLa_A486_30min_R1 2 SSLFPIDDGLLDDGHSDQVGVLNSPTCYSAHQNGER 36 0 A0A5K1VW61;A0A5K1VW79;A0A5K1VW71;A0A5K1VW93;Q7Z5Q1-7;Q7Z5Q1-5;Q7Z5Q1-4;Q7Z5Q1-6;Q7Z5Q1-3;Q7Z5Q1;Q7Z5Q1-8;Q7Z5Q1-9 A0A5K1VW61 CPEB2 Cytoplasmic polyadenylation element-binding protein 2 1 0 SSLFPIDDGLLDDGHSDQVGVLNS(0.933)PT(0.051)CY(0.002)S(0.013)AHQNGER;SSLFPIDDGLLDDGHSDQVGVLNS(0.952)PT(0.047)CYSAHQNGER ; 225.69 8.17E-40 73886000 17795.5 20508.5 19370.1 3592.7 23649.3 15194.1 21892.9 19947.8 17509.5 15048 TRUE FALSE FALSE 16548.12735 18883.33177 26870.72147 8363.987165 20682.98427 13319.60642 16415.06486 15406.1214 19027.23756 11279.88285 1.467047802 1.674071621 2.382180898 0.741495924 1.833616939 1.180828436 1.45525136 1.365805088 1.686829358 1 13.46146446 -5.256916971 24.99909618 1.359457638 1.824397196 0.291219053 0.366828329 529.0828686 2924669.148 0.096051859 0.15948867 5.53E-06 5.256916971 0.464939558 SSLFS(ph)PR ddPTM_HeLa_A485_30min_R1 6 SSLFSPR 7 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 SSLFS(1)PR;SSLFS(1)PR;SSLFS(1)PR;SSLFS(1)PR;SS(0.001)LFS(0.999)PR;SSLFS(1)PR ;;;;; 138.06 0.001555 914680000 1307210 1553650 1399130 1356190 1908920 1355110 1754270 1694590 1359480 1850530 TRUE FALSE FALSE 1597994.355 1735335.853 1916726.41 1430275.226 1718861.222 1426061.464 1379455.883 1278989.145 1632315.166 1389226.927 1.150275972 1.249137789 1.379707211 1.029547583 1.237278941 1.026514413 0.99296656 0.92064811 1.174980944 1 20.40585085 -6.037605162 1.26671676 1.011691603 1.2381926 0.431092504 0.10365692 0.40463299 1.347376133 0.04551407 0.050005672 9.17E-07 6.037605162 0.226500997 SSLFS(ph)PR ddPTM_HeLa_A486_30min_R1 6 SSLFSPR 7 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 SSLFS(1)PR;SSLFS(1)PR;SSLFS(1)PR;SSLFS(1)PR;SS(0.001)LFS(0.999)PR;S(0.007)S(0.024)LFS(0.969)PR ;;;;; 155.58 0.00056873 1294290000 1900170 1929410 1459450 625560 2051220 1794380 2038750 2061960 1560390 2013600 TRUE FALSE FALSE 1766977.895 1776516.525 2024588.125 1456335.294 1793936.861 1573007.64 1528633.186 1592496.72 1695645.862 1509381.454 1.17066358 1.176983141 1.341336294 0.964855697 1.188524515 1.042153815 1.012754717 1.05506578 1.123404463 1 20.52552602 -5.265927103 24.99992889 1.060782326 1.224393218 0.537851952 0.073913905 299.296062 1667301.518 0.020223411 0.031197701 5.42E-06 5.265927103 0.163610892 SSLGDMFS(ph)PIRDDAVVNK ddPTM_HeLa_A485_30min_R1 1 SSLGDMFSPIRDDAVVNK 18 1 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 0 S(0.007)S(0.007)LGDMFS(0.986)PIRDDAVVNK 52.483 0.018947 92129000 76271 56537 44566 104830 93366 70963 96538 82734 59951 140680 TRUE FALSE FALSE 93237.22082 63148.51034 61052.81795 110556.5975 84070.15321 74678.51295 75911.86766 62443.35678 71982.6158 105611.065 0.882835722 0.597934604 0.578091111 1.046827787 0.796035465 0.707108795 0.718787067 0.591257713 0.681582141 1 16.68840147 -6.272203774 22.37479892 0.712890733 0.773779307 0.001172119 0.159509903 820.5584463 1705594.943 0.057013178 0.050908863 5.34E-07 6.272203774 0.060888575 SSLGQS(ph)AS(ph)ETEEDTVSVSK ddPTM_HeLa_A485_30min_R1 1 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 SSLGQS(1)AS(0.999)ET(0.001)EEDTVSVSK 235.98 3.75E-45 202270000 210460 180120 127140 341050 273440 203980 308750 280530 181780 433660 TRUE FALSE FALSE 257276.1009 201183.4672 174174.3767 359680.6979 246215.3535 214660.0774 242783.0402 211729.5776 218261.5786 325556.5429 0.79026549 0.61796782 0.535004995 1.104817906 0.756290601 0.659363426 0.745747691 0.650361918 0.670426024 1 18.31254861 -11.348908 2.190022732 2.596064679 0.725302705 0.243690454 0.145030951 5648337.748 663401.6921 44666332.14 0.038311943 4.48E-12 11.348908 -1.870761974 SSLGQS(ph)AS(ph)ETEEDTVSVSK ddPTM_HeLa_A486_30min_R1 2 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 SSLGQS(1)AS(0.982)ET(0.018)EEDTVSVSK;SSLGQS(1)AS(0.989)ET(0.011)EEDTVSVSK ; 195.56 8.65E-19 382560000 1268800 1355740 774790 632660 1315460 1680370 1769540 1636990 1291560 1910930 TRUE FALSE FALSE 1179863.672 1248306.225 1074809.438 1472864.453 1150462.741 1473063.034 1326782.376 1264283.112 1403513.461 1432420.69 0.823685165 0.871466207 0.750344815 1.028234557 0.803159818 1.02837319 0.926251893 0.882619974 0.979819316 1 20.45002383 -5.256581173 24.99966189 0.941074213 0.820795479 0.4262149 0.070984243 415.807815 2139682.765 0.018358778 0.030529728 5.54E-06 5.256581173 -0.120278734 SSLGQS(ph)AS(ph)ETEEDTVSVSKK ddPTM_HeLa_A485_30min_R1 4 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 SSLGQS(1)AS(1)ETEEDTVSVSKK;SSLGQS(1)AS(0.999)ET(0.001)EEDTVSVSKK;SSLGQS(1)AS(0.908)ET(0.092)EEDTVSVSKK;S(0.001)S(0.001)LGQS(0.992)AS(0.91)ET(0.085)EEDT(0.003)VS(0.003)VS(0.003)KK ;;; 217.21 1.34E-35 1741120000 3119150 2840550 1792840 4077410 4417340 3988940 6407410 7171390 2925540 6032510 TRUE FALSE FALSE 3812994.157 3172727.613 2456086.122 4300148.584 3977534.119 4197794.73 5038414.51 5412595.358 3512669.043 4528716.277 0.841959161 0.700579904 0.542336056 0.949529253 0.878291745 0.926928179 1.11254806 1.195172103 0.775643434 1 22.11067073 -5.701797375 1.484049902 1.018028915 0.703092503 0.453932972 0.134622202 0.34587718 1.581675683 0.050161382 0.072911136 1.99E-06 5.701797375 -0.314936412 SSLGQS(ph)AS(ph)ETEEDTVSVSKK ddPTM_HeLa_A486_30min_R1 6 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 SSLGQS(1)AS(0.996)ET(0.004)EEDTVSVSKK;SSLGQS(1)AS(0.933)ET(0.067)EEDTVSVSKK;SSLGQS(0.999)AS(0.978)ET(0.022)EEDTVSVSKK;S(0.015)S(0.015)LGQS(0.921)AS(0.882)ET(0.14)EEDT(0.013)VS(0.011)VS(0.004)KK;SSLGQS(1)AS(0.998)ET(0.002)EEDTVSVSKK;SSLGQS(1)AS(0.828)ET(0.171)EEDT(0.001)VSVSKK ;;;;; 128.17 2.46E-07 1885590000 3496350 2801230 1262201 1755920 2951490 3356330 4511210 4335090 2053140 4969870 TRUE FALSE FALSE 3251273.92 2579250.333 1750959.03 4087870.499 2581286.603 2942260.129 3382457.543 3348084.641 2231107.828 3725382.204 0.872735666 0.692345159 0.47000789 1.09730231 0.692891752 0.789787455 0.907949133 0.898722455 0.598893672 1 21.82895702 -5.251878755 24.99394626 0.843582968 0.679761165 0.197375638 0.162139388 1200.277519 3137830.496 0.043098654 0.073415381 5.60E-06 5.251878755 -0.163821803 SSLGQS(ph)ASETEEDTVSVSK ddPTM_HeLa_A485_30min_R1 1 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(1)ASETEEDTVSVSK 167.16 6.06E-16 0 32039 25778 26555 39170 38703 27276 42924 35440 26098 57188 TRUE FALSE FALSE 39165.96502 28792.51286 36378.79955 41309.75792 34849.59343 28704.12918 33752.93674 26748.28443 31335.62921 42932.08407 0.912277283 0.670652578 0.847356944 0.962211801 0.811737752 0.668593892 0.786193763 0.623037176 0.729888378 1 15.38976859 -6.015768016 24.07167455 0.739594552 0.841840919 0.093706137 0.117256008 858.2111902 1310158.153 0.037086898 0.038224381 9.64E-07 6.015768016 0.102246368 SSLGQS(ph)ASETEEDTVSVSK ddPTM_HeLa_A486_30min_R1 1 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.997)AS(0.003)ETEEDTVSVSK 314.9 1.29E-89 90956000 84172 80440 44167 32540 82346 93367 103850 89342 68536 92327 TRUE FALSE FALSE 78271.97746 74065.64144 61269.64523 75754.76448 72017.39683 81848.32883 77865.63159 69000.77692 74476.75566 69207.71825 1.130971797 1.070193373 0.885300755 1.094599943 1.040597764 1.182647411 1.125100401 0.997009852 1.076133668 1 16.07864532 -4.504960509 24.0891454 1.053320647 1.115777269 0.087074993 0.076641755 1356.793713 1824045.192 0.020037126 0.07162931 3.13E-05 4.504960509 0.062456622 SSLGQS(ph)ASETEEDTVSVSKK ddPTM_HeLa_A485_30min_R1 3 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.984)AS(0.001)ET(0.015)EEDTVSVSKK;S(0.018)S(0.018)LGQS(0.959)AS(0.006)ETEEDTVSVSKK;S(0.003)S(0.003)LGQS(0.453)AS(0.142)ET(0.365)EEDT(0.028)VS(0.006)VS(0.001)KK ;; 255.32 8.49E-59 2140240000 685270 679050 438668 839900 893020 820190 1325460 1478350 642960 1165880 TRUE FALSE FALSE 837705.9473 758458.9906 600949.5477 885781.6103 804107.7932 863133.8801 1042264.643 1115782.345 771996.1744 875247.5724 0.957107422 0.866565089 0.686605215 1.012035495 0.918720392 0.986159696 1.190822661 1.274819125 0.88203178 1 19.73933163 -6.213424001 1.551785877 1.104714734 0.862474071 0.340651248 0.127251654 0.403761112 1.940335206 0.055673137 0.052424491 6.12E-07 6.213424001 -0.242240663 SSLGQS(ph)ASETEEDTVSVSKK ddPTM_HeLa_A486_30min_R1 2 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 S(0.011)S(0.011)LGQS(0.72)AS(0.129)ET(0.129)EEDTVSVSKK;SS(0.001)LGQS(0.822)AS(0.075)ET(0.101)EEDTVSVSKK ; 83.312 0.00085728 1149560000 540160 407140 229573 242230 455880 555360 618770 610590 332690 772730 TRUE FALSE FALSE 502297.5734 374876.7436 318469.8138 563923.6816 398699.2795 486845.3297 463947.2013 471571.9861 361527.8371 579233.3784 0.867176499 0.64719465 0.549812607 0.973569036 0.688322349 0.840499439 0.800967656 0.814131236 0.624148833 1 19.14378521 -11.34873429 2.316143715 2.562185346 0.75682247 0.264739311 0.121884341 8465941.402 994168.6932 69474818.24 0.030014508 4.48E-12 11.34873429 -1.805362876 SSLGQSAS(ph)ETEEDTVSVSK ddPTM_HeLa_A485_30min_R1 2 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.001)AS(0.999)ETEEDTVSVSK;SSLGQSAS(0.999)ET(0.001)EEDTVSVSK ; 277.1 1.76E-69 410010000 540980 443670 415360 740990 675230 461660 759980 644290 491680 1013190 TRUE FALSE FALSE 661319.1346 495553.3471 569018.9486 781468.4074 608001.7303 485831.8037 597604.0645 486276.8673 590355.666 760620.3794 0.869447036 0.651512056 0.748098479 1.027409242 0.799349777 0.638730984 0.785679796 0.639316117 0.776150208 1 19.53681707 -6.017889613 24.47279936 0.743483774 0.819735608 0.02285863 0.130193252 1703.945466 2330978.148 0.042352734 0.04323658 9.60E-07 6.017889613 0.076251834 SSLGQSAS(ph)ETEEDTVSVSK ddPTM_HeLa_A486_30min_R1 3 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.001)AS(0.999)ETEEDTVSVSK;SSLGQSAS(0.999)ET(0.001)EEDTVSVSK;SSLGQS(0.002)AS(0.996)ET(0.002)EEDTVSVSK ;; 341.28 1.88E-102 819110000 726580 741490 482130 339050 723600 848230 956430 877660 725710 942950 TRUE FALSE FALSE 675650.4941 682731.6319 668823.6479 789325.5346 632839.3407 743584.0068 717121.0979 677835.9772 788615.1271 706829.1824 0.955889359 0.965907533 0.946230949 1.11671328 0.895321467 1.051999585 1.014560683 0.958981313 1.115708217 1 19.43100208 -3.619251894 0.423693364 1.023491627 0.842019118 0.119466437 0.065363351 20.57071175 1.914040356 0.045892671 2.101702648 0.000240297 3.619251894 -0.181472509 SSLGQSAS(ph)ETEEDTVSVSKK ddPTM_HeLa_A485_30min_R1 4 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.019)AS(0.938)ET(0.043)EEDTVSVSKK;SSLGQS(0.001)AS(0.976)ET(0.023)EEDTVSVSKK;SSLGQSAS(0.911)ET(0.089)EEDTVSVSKK;SSLGQS(0.064)AS(0.723)ET(0.213)EEDTVSVSKK ;;; 173.86 4.58E-14 4665836000 873036 1031475 847058 933666 1374809 1200329 1634360 1908430 984201 1291406 TRUE FALSE FALSE 1067239.846 1152097.029 1160420.003 984669.8094 1237928.189 1263176.37 1285165.635 1440384.55 1181721.113 969482.2508 1.100834848 1.188363199 1.196948167 1.015665639 1.276896186 1.30293914 1.325620591 1.48572555 1.218919802 1 19.88685496 -5.906496767 8.613726632 1.299476906 1.135338601 0.219771245 0.123975402 0.339947217 27.98334412 0.037035372 0.042041692 1.24E-06 5.906496767 -0.164138305 SSLGQSAS(ph)ETEEDTVSVSKK ddPTM_HeLa_A486_30min_R1 3 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;H0YCG1;E9PJ04 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.045)AS(0.945)ET(0.01)EEDTVSVSKK;SSLGQS(0.013)AS(0.908)ET(0.079)EEDTVSVSKK;SSLGQS(0.027)AS(0.853)ET(0.121)EEDTVSVSKK ;; 145.2 1.25E-09 1442820000 305460 268706 216905 136808 320494 262511 338711 374430 218850 375213 TRUE FALSE FALSE 284048.8314 247412.7579 300896.4249 318495.9379 280294.654 230125.0618 253961.9253 289180.4627 237820.0942 281257.2226 1.009925465 0.879667216 1.069826482 1.132400921 0.996577622 0.81820143 0.902952546 1.028170797 0.845560843 1 18.10153062 -6.019635911 24.75082991 0.918364393 1.022120779 0.264749591 0.08316947 991.5674079 1249857.496 0.028403436 0.028797007 9.56E-07 6.019635911 0.103756386 SSLGSLQT(ph)PEAVTTR ddPTM_HeLa_A486_30min_R1 2 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SSLGS(0.011)LQT(0.989)PEAVTTR;SSLGSLQT(1)PEAVTTR ; 132.25 7.50E-05 287400000 656240 669050 379550 369360 602130 706030 922530 846980 563560 1241030 TRUE FALSE FALSE 610240.9648 616032.0414 526521.9247 859888.7464 526605.2408 618927.197 691703.2365 654141.1434 612409.8346 930268.0103 0.655984037 0.662209207 0.565989499 0.924345175 0.56607906 0.665321381 0.743552642 0.70317493 0.658315483 1 19.82728689 -13.99999999 0.402063861 6.159427718 0.678359939 0.495698321 0.095891627 640.0936579 4.4611659 2900.5547 0.058455093 1.00E-14 13.99999999 -5.481067779 SSLLCLQGNY(ph)AGHDWFVS(ph)S(ph)LFMIMLGDKEK ddPTM_HeLa_A485_30min_R1 1 SSLLCLQGNYAGHDWFVSSLFMIMLGDKEK 30 1 Q96NH3;Q96NH3-4 Q96NH3 TBC1D32 Protein broad-minded 3 0 S(0.186)S(0.198)LLCLQGNY(0.617)AGHDWFVS(1)S(1)LFMIMLGDKEK 52.465 0.022997 1809700000 929070 311600 164120 2792000 539460 530640 1163100 654550 399850 3432600 TRUE FALSE FALSE 1135738.416 348038.9094 224834.8176 2944519.89 485749.4682 558423.4899 914594.1833 494020.5862 480096.2274 2576915.992 0.440735522 0.135060247 0.087249572 1.142652651 0.188500312 0.216702249 0.354918122 0.191710008 0.186306511 1 21.29721408 -10.67534228 2.681334096 1.090477441 0.327891137 0.32593743 0.290306226 52744586.87 45995915.16 32599366.81 0.076991995 2.11E-11 10.67534228 -0.762586303 SSLNS(ph)SPWSGLMALGNSR ddPTM_HeLa_A485_30min_R1 1 SSLNSSPWSGLMALGNSR 18 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 SSLNS(0.5)S(0.5)PWSGLMALGNSR 216.35 2.89E-34 255600000 241770 231100 164590 192070 252610 181880 206590 280260 174810 365320 TRUE FALSE FALSE 295550.9024 258125.1347 225478.6902 202562.2978 227459.2614 191402.9556 162450.3588 211525.7956 209892.7635 274252.4472 1.077660037 0.941195374 0.822157441 0.738597959 0.82937915 0.697907922 0.592338776 0.771281342 0.765326857 1 18.06514497 -4.490275295 1.283889865 0.749958973 1.150769157 0.493038814 0.098701981 0.721352238 1.411609751 0.029325982 0.342984291 3.23E-05 4.490275295 0.400810184 SSLNS(ph)SPWSGLMALGNSR ddPTM_HeLa_A486_30min_R1 1 SSLNSSPWSGLMALGNSR 18 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 SSLNS(0.43)S(0.324)PWS(0.246)GLMALGNSR 66.335 0.0099375 164120000 365420 329360 286380 110750 411800 303370 361690 309890 294610 357210 TRUE FALSE FALSE 339805.945 303260.3141 397274.0055 257831.597 360148.2041 265943.2938 271191.3364 239334.8119 320147.032 267762.291 1.269058252 1.132572899 1.483681679 0.962912276 1.345029589 0.993206672 1.012806305 0.89383315 1.195638978 1 18.03059327 -6.278091509 24.26726345 1.012068398 1.231051719 0.365765667 0.144233801 609.5299743 888269.0736 0.047894757 0.042368301 5.27E-07 6.278091509 0.218983321 SSLNSS(ph)PWSGLMALGNSR ddPTM_HeLa_A485_30min_R1 1 SSLNSSPWSGLMALGNSR 18 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 SSLNS(0.173)S(0.815)PWS(0.012)GLMALGNSR 106.75 0.00013396 311440000 326500 319780 240310 302620 334890 275570 335340 409020 280380 603840 TRUE FALSE FALSE 399128.7986 357175.4893 329210.6691 319151.3643 301547.1757 289998.4191 263691.8695 308707.2037 336649.6942 453313.8009 0.88046911 0.787921057 0.726231296 0.704040697 0.665206255 0.639729959 0.581698305 0.681001115 0.742641617 1 18.79015056 -8.173743066 4.704021364 0.999996173 0.703737068 0.557782574 0.07735062 1.752809216 46.82322483 0.083125105 0.021696547 6.70E-09 8.173743066 -0.296259105 SSLNSS(ph)PWSGLMALGNSR ddPTM_HeLa_A486_30min_R1 1 SSLNSSPWSGLMALGNSR 18 0 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 SSLNS(0.478)S(0.521)PWS(0.001)GLMALGNSR 227.95 9.86E-35 210880000 368880 327440 275810 88358 404130 296690 330140 253290 286600 316020 TRUE FALSE FALSE 343023.4169 301492.4619 382611.0184 205701.8894 353440.247 260087.4043 247535.4801 195621.3963 311442.7188 236886.5351 1.44804945 1.272729418 1.615165752 0.868356191 1.492023373 1.097940853 1.04495378 0.825802092 1.314733734 1 17.85383667 -5.732605115 0.650435778 1.023898896 1.444956498 0.292771614 0.216383765 1.131988863 1.00812916 0.137989871 0.270050152 1.85E-06 5.732605115 0.421057603 SSLPLDHGSPAQENPESEKS(ph)SPAVSR ddPTM_HeLa_A485_30min_R1 1 SSLPLDHGSPAQENPESEKSSPAVSR 26 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 SSLPLDHGS(0.243)PAQENPES(0.061)EKS(0.413)S(0.28)PAVS(0.002)R 58.776 0.015786 327140000 400250 430670 339470 105930 411280 460550 315630 454320 398210 155490 TRUE FALSE FALSE 489284.2317 481033.1102 465054.0795 111716.6877 370331.5191 484663.6859 248193.072 342897.3077 478127.0944 116729.2046 4.191617971 4.120931963 3.984042221 0.957058588 3.172569542 4.152034511 2.126229446 2.93754514 4.096036601 1 16.83280603 -5.036966994 24.99553816 2.755919123 4.130329549 0.292812439 1.033012269 726.6866241 491354.6083 0.276376598 0.478889711 9.18E-06 5.036966994 1.374410427 SSLPLDHGSPAQENPESEKS(ph)SPAVSR ddPTM_HeLa_A486_30min_R1 1 SSLPLDHGSPAQENPESEKSSPAVSR 26 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 SSLPLDHGSPAQENPES(0.032)EKS(0.777)S(0.187)PAVS(0.003)R 125.99 5.35E-06 819260000 196660 215800 153510 40760 223210 139600 182690 156210 213400 103250 TRUE FALSE FALSE 182875.1496 198699.2221 212953.1831 94891.3399 195212.9204 122377.5713 136979.0297 120644.393 231897.6838 77395.52796 2.362864553 2.567321747 2.751492092 1.226057143 2.522276488 1.581196932 1.769857165 1.558803153 2.996267226 1 16.23996259 -5.236741188 24.89400947 1.849812768 2.561235761 0.274236909 0.558268584 1000.345788 1008275.592 0.142800369 0.24719476 5.80E-06 5.236741188 0.711422993 SSLPLDHGSPAQENPESEKSS(ph)PAVSR ddPTM_HeLa_A486_30min_R1 2 SSLPLDHGSPAQENPESEKSSPAVSR 26 1 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 SSLPLDHGSPAQENPES(0.014)EKS(0.409)S(0.577)PAVS(0.001)R;S(0.003)S(0.003)LPLDHGS(0.019)PAQENPES(0.02)EKS(0.249)S(0.703)PAVS(0.003)R ; 182.56 2.34E-20 685130000 414320 465870 447150 55508 604590 306290 327350 329640 462870 124189 TRUE FALSE FALSE 385278.3076 428952.7645 620298.4551 129225.4292 528756.6846 268503.0539 245443.5676 254588.168 502991.9443 93091.26607 4.138715949 4.607873355 6.663336759 1.388158467 5.679981667 2.884299089 2.636590714 2.734823349 5.403213057 1 16.5063582 -8.502038752 0.161924393 3.01E-13 5.567265586 0.249449278 1.549273775 13.81542708 1.099238768 22.24723909 10.91385423 3.15E-09 8.502038752 5.567265586 SSLPPNS(ph)PKPVR ddPTM_HeLa_A485_30min_R1 2 SSLPPNSPKPVR 12 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 SSLPPNS(1)PKPVR;SSLPPNS(0.999)PKPVR ; 91.812 0.00096161 249190000 174996 163164 107222 221894 198506 189657 254080 260470 135717 313050 TRUE FALSE FALSE 213923.2565 182244.6105 146887.8797 234015.5074 178742.0456 199587.1473 199793.7324 196589.3241 162954.157 235012.3963 0.910263713 0.775468075 0.625021837 0.995758143 0.76056433 0.849262211 0.85014125 0.83650619 0.693385369 1 17.84237733 -10.12527271 4.578992824 1.000018645 0.811230453 0.244082929 0.099932227 22235311.4 49167711.17 2524.712365 0.023371586 7.49E-11 10.12527271 -0.188788192 SSLPPNS(ph)PKPVR ddPTM_HeLa_A486_30min_R1 3 SSLPPNSPKPVR 12 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 SSLPPNS(1)PKPVR;SSLPPNS(1)PKPVR;SSLPPNS(1)PKPVR ;; 96.247 0.00066836 313872000 322448 303501 173684 166114 311774 313372 420300 378380 257940 475970 TRUE FALSE FALSE 299846.0603 279450.4754 240939.0962 386721.7869 272668.3977 274711.3488 315136.4945 292231.134 280298.4469 356784.014 0.840413383 0.783248308 0.675307992 1.083910074 0.764239392 0.769965408 0.883269659 0.819070145 0.785625017 1 18.44469145 -10.90208558 2.228146901 1.106839258 0.823357615 0.215174724 0.101529905 15009994.43 7057161.582 8399876.984 0.026181752 1.25E-11 10.90208558 -0.283481643 SSLS(ph)GDEEDELFK ddPTM_HeLa_A485_30min_R1 3 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 SSLS(0.999)GDEEDELFK;SSLS(1)GDEEDELFK;SSLS(1)GDEEDELFK ;; 310.81 2.64E-68 1303820000 1820820 1360700 988810 3066340 2178540 1624780 2841290 2433190 1493040 4144600 TRUE FALSE FALSE 2225855.127 1519822.028 1354611.967 3233846.39 1961636.908 1709850.968 2234225.18 1836446.337 1792679.433 3111427.496 0.715380683 0.488464549 0.435366715 1.039344929 0.630462034 0.549539069 0.718070784 0.5902263 0.576159797 1 21.5691452 -10.52227635 3.111479571 1.011775352 0.637662322 0.319629706 0.158394558 99486898.93 120090598.1 9985482.078 0.039792416 3.00E-11 10.52227635 -0.37411303 SSLS(ph)GDEEDELFK ddPTM_HeLa_A486_30min_R1 5 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 SS(0.001)LS(0.999)GDEEDELFK;SSLS(1)GDEEDELFK;SSLS(1)GDEEDELFK;SS(0.001)LS(0.999)GDEEDELFK;S(0.001)S(0.007)LS(0.992)GDEEDELFK ;;;; 266.35 1.00E-41 2263830000 2694110 2694540 1334600 1710420 2487990 3284510 4455550 3962650 2277050 4657920 TRUE FALSE FALSE 2505266.801 2481014.837 1851392.862 3981944.2 2175923.095 2879300.551 3340724.264 3060441.099 2474426.527 3491546.514 0.717523536 0.710577627 0.530250092 1.140452858 0.62319751 0.82464906 0.956803597 0.876528807 0.708690695 1 21.73543476 -1.392620197 0.126755658 1.009072984 5.24E-13 0.179528281 0.160337593 139.9874807 1.329169899 0.951971133 24.77154123 0.040492986 1.392620197 -1.009072984 SSLS(ph)PGR ddPTM_HeLa_A485_30min_R1 5 SSLSPGR 7 0 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 S(0.309)S(0.017)LS(0.675)PGR;S(0.063)S(0.003)LS(0.934)PGR;SSLS(1)PGR;SSLS(1)PGR;SS(0.002)LS(0.998)PGR ;;;; 121.58 0.0019221 12171560000 2945230 4188790 4082450 3397440 4824330 3748930 4711300 4765400 3801060 4555340 TRUE FALSE FALSE 3600386.253 4678632.553 5592718.14 3583033.544 4344002.766 3945218.178 3704692.267 3596678.178 4563897.877 3419777.573 1.05281299 1.368110192 1.635404064 1.047738769 1.270258861 1.153647597 1.083313809 1.051728687 1.334559859 1 21.70547106 -5.310154711 24.99999485 1.140945479 1.353710657 0.272848337 0.162573709 500.0788121 256631.9682 0.045636085 0.067689361 4.90E-06 5.310154711 0.212765177 SSLS(ph)PGR ddPTM_HeLa_A486_30min_R1 4 SSLSPGR 7 0 Q9BUQ8;F8W1J5;F8VVA2 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 1 0 SSLS(0.999)PGR;SSLS(1)PGR;SSLS(1)PGR;SSLS(1)PGR ;;; 117.89 0.0022729 10206780000 4012550 4536490 3848040 1469210 5138400 4000130 4634190 4683770 4071550 4316530 TRUE FALSE FALSE 3731290.966 4177002.011 5338104.142 3420395.13 4493893.958 3506634.631 3474666.647 3617377.817 4424475.232 3235642.792 1.153183836 1.290934222 1.649781662 1.057099114 1.388872087 1.083752088 1.073872139 1.117978111 1.367417702 1 21.62562092 -6.266923534 24.89497062 1.132556894 1.312079321 0.217132103 0.170123217 712.6915131 3235206.47 0.058789742 0.053337695 5.41E-07 6.266923534 0.179522427 SSLS(ph)PTMRPGTGAER ddPTM_HeLa_A486_30min_R1 1 SSLSPTMRPGTGAER 15 1 O75400-2;H7BXZ7;H7C2N3;O75400-5 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 S(0.031)S(0.097)LS(0.436)PT(0.436)MRPGTGAER 51.089 0.02443 251360000 327390 343510 212010 120260 277820 343130 400230 372440 254310 447940 TRUE FALSE FALSE 304441.6516 316289.0166 294105.9498 279971.3576 242973.225 300798.1093 300088.2208 287643.5423 276353.7956 335772.9084 0.906689146 0.941973008 0.875907324 0.833811635 0.723623672 0.895837936 0.893723744 0.856660961 0.823037799 1 18.35712631 -9.78185264 19.8883243 1 0.861039209 0.349674621 0.056764544 0 0 0.059616569 0.014459142 1.65E-10 9.78185264 -0.138960791 SSLSNNECGSLDKTS(ph)PEMSNSNNDER ddPTM_HeLa_A485_30min_R1 1 SSLSNNECGSLDKTSPEMSNSNNDER 26 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 SSLSNNECGSLDKT(0.167)S(0.833)PEMSNSNNDER 135.32 1.73E-06 275450000 54127 62353 42722 97161 90270 53639 88188 93799 67888 133110 TRUE FALSE FALSE 66167.36441 69644.64095 58526.64561 102468.6594 81282.40184 56447.4551 69345.91337 70794.64818 81512.49889 99928.12671 0.662149553 0.696947328 0.585687409 1.0254236 0.813408642 0.564880549 0.693957904 0.708455672 0.815711267 1 16.60860319 -8.092181451 2.919582522 0.999749528 0.721339557 0.331380973 0.122085364 0.482617994 9.185367453 0.123531362 0.033065398 8.09E-09 8.092181451 -0.278409971 SSLSNNECGSLDKTS(ph)PEMSNSNNDER ddPTM_HeLa_A486_30min_R1 1 SSLSNNECGSLDKTSPEMSNSNNDER 26 1 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 SSLSNNECGS(0.004)LDKT(0.212)S(0.756)PEMS(0.023)NS(0.005)NNDER 53.905 0.0011633 0 96852 92853 43640 30885 80426 92213 119680 110360 68456 114040 TRUE FALSE FALSE 90063.17494 85494.99012 60538.57672 71901.84084 70338.22114 80836.69761 89734.79815 85233.43714 74389.8212 85483.64172 1.053572042 1.000132755 0.708189023 0.84111813 0.82282668 0.945639376 1.049730643 0.997073071 0.870222884 1 16.38336075 -6.511569955 23.14549637 0.981680207 0.879771073 0.170373596 0.098232875 378.8109074 775312.4354 0.038685574 0.032159338 3.08E-07 6.511569955 -0.101909134 SSLSNNS(ph)LK ddPTM_HeLa_A486_30min_R1 1 SSLSNNSLK 9 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 SSLS(0.045)NNS(0.954)LK 79.82 0.0083322 124220000 212790 215510 113180 161840 220580 253140 328710 297990 177710 417510 TRUE FALSE FALSE 197874.5198 198432.2027 157006.3271 376771.6989 192912.7996 221910.1605 246463.2813 230144.1821 193114.0459 312962.7785 0.632262152 0.634044098 0.501677317 1.203886612 0.616408125 0.709062469 0.787516274 0.735372376 0.617051161 1 18.25563156 -11.37118308 2.306784521 3.006938628 0.720582618 0.183669798 0.179776072 13527236.88 1108491.892 142666230.6 0.04466233 4.25E-12 11.37118308 -2.28635601 SSLSPT(ph)MRPGTGAER ddPTM_HeLa_A485_30min_R1 2 SSLSPTMRPGTGAER 15 1 O75400-2;H7BXZ7;H7C2N3;O75400-5 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 S(0.005)S(0.005)LS(0.124)PT(0.865)MRPGTGAER;S(0.001)S(0.011)LS(0.238)PT(0.75)MRPGTGAER ; 88.385 0.0015458 818610000 338070 332580 359680 404440 430660 310940 416890 406050 321180 539700 TRUE FALSE FALSE 413272.5052 371472.3379 492740.5995 426533.5331 387781.9783 327220.3376 327818.0458 306465.6008 385637.88 405162.7224 1.020016113 0.916847275 1.216154824 1.052746241 0.957101818 0.807626959 0.809102189 0.756401277 0.951809874 1 18.62814192 -6.002270328 3.341319328 0.847130301 1.052437055 0.449589026 0.096028549 0.210201268 4.925100515 0.032494816 0.035165381 9.95E-07 6.002270328 0.205306754 SSLSPT(ph)MRPGTGAER ddPTM_HeLa_A486_30min_R1 2 SSLSPTMRPGTGAER 15 1 O75400-2;H7BXZ7;H7C2N3;O75400-5 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 S(0.005)S(0.005)LS(0.027)PT(0.963)MRPGTGAER;S(0.006)S(0.006)LS(0.181)PT(0.807)MRPGTGAER ; 82.877 0.0036335 615660000 541480 590070 340110 246479 508350 684120 701980 659770 460960 735180 TRUE FALSE FALSE 503525.0482 543310.7042 471809.7005 573815.5684 444588.0028 599720.23 526337.1792 509554.7737 500916.3839 551086.1428 0.913695717 0.985890702 0.856145099 1.041244778 0.806748652 1.088251334 0.955090572 0.924637247 0.908962039 1 19.07191833 -6.262997169 24.99956329 0.969409453 0.927469751 0.109982505 0.075585004 443.5482633 7118075.091 0.024981318 0.023205849 5.46E-07 6.262997169 -0.041939702 SSLSTSS(ph)PESAR ddPTM_HeLa_A485_30min_R1 1 SSLSTSSPESAR 12 0 D6REJ6;D6R9F1;D6REQ4;D6RDH3;D6RBZ2;D6RF08;D6RF67;D6RF51;D6RB63;D6R9D1;D6RC23;D6RAM4;D6RGK2;D6R9N9;D6RC13;Q8N7B6-2;Q8N7B6-3;Q8N7B6-4;Q8N7B6 D6REJ6 PACRGL PACRG-like protein 1 0 SSLS(0.006)T(0.185)S(0.185)S(0.623)PESAR 115.57 0.000266 300000000 276770 375810 377130 313700 430270 389280 415770 403170 332450 402000 TRUE FALSE FALSE 338336.5317 419757.7104 516646.0807 330836.6367 387430.808 409662.0989 326937.343 304291.9254 399169.6656 301788.7983 1.121103678 1.390898909 1.71194585 1.096252209 1.283781274 1.357446337 1.083331604 1.008294301 1.322678866 1 18.20317973 -6.517525213 1.026612083 1.097014022 1.362300711 0.230836454 0.183677113 0.792613985 1.718587539 0.119957322 0.085182824 3.04E-07 6.517525213 0.265286689 SSLSTSS(ph)PESAR ddPTM_HeLa_A486_30min_R1 1 SSLSTSSPESAR 12 0 D6REJ6;D6R9F1;D6REQ4;D6RDH3;D6RBZ2;D6RF08;D6RF67;D6RF51;D6RB63;D6R9D1;D6RC23;D6RAM4;D6RGK2;D6R9N9;D6RC13;Q8N7B6-2;Q8N7B6-3;Q8N7B6-4;Q8N7B6 D6REJ6 PACRGL PACRG-like protein 1 0 SSLS(0.011)T(0.084)S(0.084)S(0.821)PESAR 120.63 0.00011642 302450000 408240 567360 455200 151010 687630 477980 561970 601880 492530 504430 TRUE FALSE FALSE 379624.4842 522400.3273 631465.6307 351558.9116 601381.0335 419011.6873 421359.1621 464845.0629 535222.897 378117.4447 1.003985638 1.38158219 1.670025119 0.929761154 1.590460958 1.108152224 1.114360546 1.229366879 1.415493796 1 18.52847489 SSMIT(ph)SLEGLGTDNVFSLHEDNHYR ddPTM_HeLa_A485_30min_R1 1 SSMITSLEGLGTDNVFSLHEDNHYR 25 0 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 S(0.017)S(0.017)MIT(0.523)S(0.442)LEGLGTDNVFSLHEDNHYR 117.08 0.00031404 37655000 5506.6 10160 8499.1 5948.3 9189.9 6068 10037 10584 8206.8 7906.9 TRUE FALSE FALSE 6731.524172 11348.12362 11643.27077 6273.240567 8274.921288 6385.711097 7892.512955 7988.257405 9853.829483 5935.855346 1.134044511 1.911792481 1.961515247 1.056838518 1.3940571 1.075786172 1.329633641 1.34576349 1.660052159 1 12.53524022 -5.265198902 24.98739482 1.280484738 1.693384917 0.305963077 0.276892652 379.5191442 2522450.019 0.076375184 0.118346357 5.43E-06 5.265198902 0.412900179 SSMIT(ph)SLEGLGTDNVFSLHEDNHYR ddPTM_HeLa_A486_30min_R1 1 SSMITSLEGLGTDNVFSLHEDNHYR 25 0 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 SSMIT(0.5)S(0.5)LEGLGTDNVFSLHEDNHYR 138.92 2.26E-06 59675000 4364.3 3681.4 5947.6 1075.8 7570.4 4862.9 6485 4881.6 4637.6 3604.2 TRUE FALSE FALSE 4058.385107 3389.672457 8250.670002 2504.516768 6620.849841 4262.96484 4862.384409 3770.166245 5039.590902 2701.684861 1.502168209 1.254651313 3.053898004 0.927020321 2.450637355 1.577891227 1.799760024 1.395487053 1.865351128 1 11.39964369 -9.281862569 0.476567198 0.88078644 1.812027446 0.134224191 0.578345831 12.8364915 3.023462235 3.294072735 0.29164044 5.23E-10 9.281862569 0.931241006 SSMITS(ph)LEGLGTDNVFSLHEDNHYR ddPTM_HeLa_A486_30min_R1 1 SSMITSLEGLGTDNVFSLHEDNHYR 25 0 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 SSMIT(0.154)S(0.846)LEGLGTDNVFSLHEDNHYR 144.44 3.43E-09 51058000 3599.7 4723.9 5796.9 0 6355.9 2997.5 5468.2 4707.4 6042.6 3444.8 TRUE FALSE FALSE 3347.379619 4349.56096 8041.614926 0 5558.683756 2627.698926 4099.998523 3635.627782 6566.377433 2582.199658 1.296328736 1.68444022 3.114249861 0 2.152693243 1.017620353 1.587792993 1.407957657 2.542939471 1 11.33438484 -5.24002734 24.99544673 1.428877864 1.996949257 0.124558586 0.776040438 1957.952636 2285622.673 0.202869887 0.3509578 5.75E-06 5.24002734 0.568071393 SSMS(ph)GLHLVK ddPTM_HeLa_A486_30min_R1 2 SSMSGLHLVK 10 0 Q13085;Q13085-4;A0A0C4DGT1;Q13085-2 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 S(0.001)S(0.012)MS(0.987)GLHLVK;S(0.203)S(0.203)MS(0.594)GLHLVK ; 148.76 4.25E-06 361800000 964130 842450 608760 176067 1085720 978680 1343420 1338020 894880 1235550 TRUE FALSE FALSE 896549.4658 775691.1938 844488.1752 409892.8739 949538.8737 857940.4121 1007282.107 1033382.055 972448.9189 926160.2379 0.968028457 0.837534545 0.911816488 0.442572308 1.025242539 0.926341228 1.087589453 1.115770266 1.049979128 1 19.82090229 -5.950407445 24.99997618 1.03855683 0.793563542 0.426860416 0.138609384 109.019187 54956.80706 0.043517979 0.04934474 1.12E-06 5.950407445 -0.244993288 SSPAAKPGSTPS(ph)RPS(ph)SAKR ddPTM_HeLa_A485_30min_R1 1 SSPAAKPGSTPSRPSSAKR 19 3 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 2 0 SSPAAKPGS(0.231)T(0.335)PS(0.434)RPS(0.532)S(0.468)AKR 53.496 0.019787 770380000 458250 351400 205940 596300 496620 444960 765180 785580 344670 757050 TRUE FALSE FALSE 560186.1316 392493.1732 282125.7759 628874.3591 447174.7691 468257.4176 601693.0421 592915.2733 413842.1075 568331.3675 0.985668157 0.690606213 0.496410707 1.106527626 0.786820497 0.823916195 1.058701097 1.043256289 0.72817045 1 19.11637282 -5.269741042 24.99930678 0.931452931 0.720866139 0.264955147 0.161016912 829.4769544 2497854.034 0.045499372 0.068758105 5.37E-06 5.269741042 -0.210586792 SSPAAKPGSTPS(ph)RPSS(ph)AKR ddPTM_HeLa_A485_30min_R1 1 SSPAAKPGSTPSRPSSAKR 19 3 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 2 0 SSPAAKPGS(0.093)T(0.108)PS(0.798)RPS(0.229)S(0.772)AKR 90.694 0.00034843 1489200000 1157400 994670 603490 1766800 1400100 1300700 2123900 2049500 901210 2239200 TRUE FALSE FALSE 1414859.637 1110988.004 826746.0643 1863315.81 1260701.128 1368802.641 1670111.414 1546856.912 1082074.581 1681008.649 0.841673026 0.660905585 0.491815473 1.108451055 0.749967068 0.814274597 0.993517443 0.920195688 0.64370554 1 20.68089572 -5.252655167 24.98634257 0.882012043 0.664408802 0.326172769 0.148028661 789.5382635 2245805.202 0.039780465 0.067590044 5.59E-06 5.252655167 -0.217603241 SSPAAKPGSTPSRPS(ph)SAKR ddPTM_HeLa_A485_30min_R1 2 SSPAAKPGSTPSRPSSAKR 19 3 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 1 0 SSPAAKPGSTPS(0.012)RPS(0.734)S(0.253)AKR;SSPAAKPGS(0.005)T(0.005)PS(0.092)RPS(0.449)S(0.449)AKR ; 127.3 2.84E-05 11212700000 2413950 2147120 1426880 2975520 3035480 2521280 4085800 4428400 2270440 4081300 TRUE FALSE FALSE 2950924.849 2398207.007 1954742.289 3138065.123 2733256.953 2653290.322 3212835.452 3342327.957 2726096.482 3063907.021 0.963124804 0.782728389 0.637990081 1.024203771 0.892082212 0.86598265 1.04860736 1.090871209 0.889745173 1 21.54694109 -6.015999194 0.995337473 1.005039664 0.814099257 0.278300647 0.110058606 0.674994685 1.441410166 0.058211215 0.068122624 9.64E-07 6.015999194 -0.190940407 SSPAAKPGSTPSRPS(ph)SAKR ddPTM_HeLa_A486_30min_R1 3 SSPAAKPGSTPSRPSSAKR 19 3 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 1 0 SSPAAKPGSTPS(0.02)RPS(0.784)S(0.195)AKR;SSPAAKPGSTPS(0.006)RPS(0.497)S(0.497)AKR;SSPAAKPGS(0.007)T(0.007)PS(0.034)RPS(0.477)S(0.477)AKR ;; 140.31 2.38E-06 11223480000 4920600 4167510 1862054 2070102 4039530 4876820 5947930 5375420 3402430 6484150 TRUE FALSE FALSE 4575691.35 3837261.33 2583091.176 4819302.073 3532854.48 4275167.532 4459695.003 4151554.211 3697355.372 4860476.635 0.941407951 0.789482517 0.531448121 0.991528699 0.726853505 0.879577838 0.91754273 0.854145493 0.760698106 1 22.21266637 -6.075071602 1.360536717 0.874308391 0.782561427 0.078591176 0.130018057 1.195925582 4.534876553 0.056712792 0.059883462 8.41E-07 6.075071602 -0.091746965 SSPETGTTGDVAWQIS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SSPETGTTGDVAWQISPK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 SSPETGTTGDVAWQIS(1)PK 223.76 5.85E-35 0 20088 17393 8570.9 15612 10555 20366 28678 26048 11760 34795 TRUE FALSE FALSE 18679.93493 16014.71534 11889.78202 36345.52499 9231.093479 17853.44999 21502.46108 20117.43902 12779.36627 26082.10552 0.716197353 0.6140116 0.455859747 1.393504254 0.353924397 0.684509537 0.824414312 0.771311925 0.489966819 1 14.67077272 -10.1986993 3.510706688 1.000410521 0.706136343 0.098913485 0.270774627 65126699.07 105886928.1 325878.5387 0.067357513 6.33E-11 10.1986993 -0.294274178 SSPFKVS(ph)PLTFGR ddPTM_HeLa_A485_30min_R1 2 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 1 0 SSPFKVS(1)PLTFGR;SSPFKVS(0.997)PLT(0.002)FGR ; 165.16 3.52E-12 1273520000 675000 674420 497480 884800 1031590 730980 1157960 1302120 654180 1249950 TRUE FALSE FALSE 825151.4213 753287.5523 681518.5539 933134.3836 928881.2775 769252.9825 910552.3863 982773.0284 785467.9255 938360.4686 0.879354415 0.802769914 0.726286514 0.994430621 0.989898135 0.81978409 0.970365245 1.047329956 0.837064169 1 19.83978271 -5.269169435 24.9940888 0.950166422 0.802800243 0.446467036 0.075747366 532.5180568 1721824.532 0.021306715 0.032276866 5.38E-06 5.269169435 -0.147366179 SSPFKVS(ph)PLTFGR ddPTM_HeLa_A486_30min_R1 2 SSPFKVSPLTFGR 13 1 O95810 O95810 SDPR Serum deprivation-response protein 1 0 SSPFKVS(1)PLTFGR;SSPFKVS(0.999)PLT(0.001)FGR ; 183.36 1.84E-17 1319580000 721730 764830 417890 372770 776040 862730 1162510 1090890 603290 1056880 TRUE FALSE FALSE 671140.454 704222.0853 579708.1995 867827.3988 678701.8269 756295.1442 871637.7022 842518.161 655583.6629 792230.3689 0.847153152 0.888910742 0.731741956 1.09542304 0.856697564 0.954640435 1.10023263 1.063476224 0.827516451 1 19.59556048 -5.258839612 24.9986103 0.986208578 0.829232833 0.38846849 0.093503849 251.3392364 2416793.66 0.025841232 0.042264582 5.51E-06 5.258839612 -0.156975744 SSPGAVAGLSNAPGT(ph)PR ddPTM_HeLa_A485_30min_R1 1 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 SSPGAVAGLS(0.002)NAPGT(0.998)PR 102.58 0.0015129 145480000 59266 116400 138070 65420 148880 92384 93154 98185 112270 68933 TRUE FALSE FALSE 72449.51723 130011.9675 189147.8386 68993.72895 134056.9845 97221.08339 73250.8869 74104.9748 134801.5592 51749.27172 1.400010374 2.512343906 3.655082135 1.333230916 2.590509586 1.878694717 1.415495996 1.432000342 2.604897706 1 15.65925094 -6.460803884 5.230895457 1.647147076 2.328649378 0.168438557 0.717844751 0.403211821 22.32932963 0.259809446 0.223868414 3.46E-07 6.460803884 0.681502302 SSPGAVAGLSNAPGT(ph)PR ddPTM_HeLa_A486_30min_R1 2 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 SSPGAVAGLSNAPGT(1)PR;SSPGAVAGLS(0.001)NAPGT(0.999)PR ; 172.72 1.34E-11 297940000 162941 180380 135865 72355 189771 150858 171548 189793 142195 189919 TRUE FALSE FALSE 151519.6773 166086.0319 188475.5666 168446.0966 165968.1516 132246.6738 128624.876 146581.2771 154520.5771 142362.0462 1.064326352 1.166645439 1.323917235 1.183223346 1.165817407 0.928946143 0.903505389 1.029637329 1.085405705 1 17.11920505 -6.185451332 5.798665042 0.986310024 1.190130778 0.616797888 0.075292658 0.161153366 9.477658316 0.027063039 0.027002913 6.52E-07 6.185451332 0.203820754 SSPGLGYCS(ph)PLAPPS(ph)PQLSLR ddPTM_HeLa_A486_30min_R1 1 SSPGLGYCSPLAPPSPQLSLR 21 0 A0A087WYA1;Q9UKN7 A0A087WYA1 MYO15A Unconventional myosin-XV 2 0 S(0.218)S(0.218)PGLGY(0.499)CS(0.533)PLAPPS(0.533)PQLS(0.001)LR 43.116 0.022449 806110000 9973 6655.5 6835.3 4214.9 11861 8303.7 8810 12019 7918.8 6647.2 TRUE FALSE FALSE 9273.944201 6128.093941 9482.111216 9812.500209 10373.28278 7279.27392 6605.644817 9282.536073 8605.20796 4982.697854 1.861229493 1.229874682 1.903007466 1.969314716 2.081860688 1.46091016 1.325716512 1.862953834 1.727017815 1 12.28271138 -6.30575235 24.99883479 1.519904013 1.791003526 0.224708629 0.303447457 912.3078105 514669.0505 0.110878161 0.097785775 4.95E-07 6.30575235 0.271099514 SSPGSVAAS(ph)PSGGGGR ddPTM_HeLa_A485_30min_R1 2 SSPGSVAASPSGGGGR 16 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 SSPGSVAAS(1)PSGGGGR;SSPGSVAAS(0.949)PS(0.051)GGGGR ; 196.31 1.01E-17 297910000 268740 355180 298950 246850 371860 270060 351300 365890 254290 327300 TRUE FALSE FALSE 328520.2859 396715.2113 409544.0453 260334.7904 334836.3127 284199.924 276241.8851 276154.9038 305323.6705 245710.1335 1.337023757 1.614565935 1.666777188 1.059519958 1.362728952 1.156647143 1.124259229 1.123905229 1.242617332 1 17.90659783 -5.262682888 24.9987304 1.165690583 1.546966665 0.675732982 0.122479414 63.24797363 1271508.366 0.033378935 0.052779913 5.46E-06 5.262682888 0.381276082 SSPGSVAAS(ph)PSGGGGR ddPTM_HeLa_A486_30min_R1 2 SSPGSVAASPSGGGGR 16 0 Q9BXB5;Q9BXB5-2 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 SSPGSVAAS(0.993)PS(0.007)GGGGR;SSPGSVAAS(1)PSGGGGR ; 198.51 4.40E-25 557720000 343990 357410 313170 118875 423950 327520 359050 360800 292520 351450 TRUE FALSE FALSE 319878.0774 329087.5299 434437.811 276747.0076 370774.2378 287113.9124 269211.8924 278653.7162 317875.8691 263444.6324 1.214213683 1.249171512 1.649066853 1.050494007 1.407408587 1.089845368 1.021891734 1.057731614 1.206613573 1 18.00714026 -6.303537624 10.16796177 1.075289737 1.314391661 0.381870128 0.151945581 0.736873553 175.3325577 0.052410741 0.046318337 4.97E-07 6.303537624 0.239101924 SSPKT(ph)PPRRPVPVADCEPPPVDR ddPTM_HeLa_A485_30min_R1 1 SSPKTPPRRPVPVADCEPPPVDR 23 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 S(0.078)S(0.078)PKT(0.845)PPRRPVPVADCEPPPVDR 63.427 0.020016 315440000 47499 45744 39446 62736 67962 56988 76078 90444 59146 103800 TRUE FALSE FALSE 58064.98868 51093.36288 54038.71689 66163.10882 61195.46465 59971.80356 59823.3138 68262.46719 71016.05968 77924.5703 0.745143521 0.655677185 0.693474686 0.849066072 0.785316678 0.769613529 0.767707972 0.876006976 0.911343616 1 16.24979067 -7.464975321 0.264161112 1.044930198 0.660208969 0.774061626 0.046974745 0.921021044 0.259886075 0.132080955 0.125404247 3.43E-08 7.464975321 -0.384721229 SSPLEVLESAACEKLPT(ph)PTPQVVK ddPTM_HeLa_A485_30min_R1 1 SSPLEVLESAACEKLPTPTPQVVK 24 1 E7EVA0;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein 1 0 SSPLEVLESAACEKLPT(0.5)PT(0.5)PQVVK 97.063 0.0019054 38175000 45645 33812 19641 74583 59527 41365 66531 65565 34199 100730 TRUE FALSE FALSE 55798.57278 37766.01927 26907.02323 78657.28044 53600.28287 43530.80744 52316.10834 49485.08095 41062.42561 75619.8648 0.737882472 0.499419291 0.35581951 1.040166901 0.708812202 0.575653072 0.691830228 0.654392613 0.543011095 1 16.20647765 -11.03488034 2.613322289 1.437430393 0.645501647 0.280087132 0.170636289 29684533.39 13807864.45 77647898.16 0.044679316 9.23E-12 11.03488034 -0.791928745 SSPNPFVGS(ph)PPK ddPTM_HeLa_A485_30min_R1 4 SSPNPFVGSPPK 12 0 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 SSPNPFVGS(1)PPK;SSPNPFVGS(1)PPK;SSPNPFVGS(1)PPK;SSPNPFVGS(1)PPK ;;; 112.17 0.00036672 8187030000 7045510 4964370 3722820 12154850 6551380 4328970 7384510 6164450 4868150 15057190 TRUE FALSE FALSE 8612759.393 5544909.887 5100046.037 12818838.68 5899101.604 4555628.175 5806749.113 4652608.972 5845143.052 11303709.64 0.761940962 0.490538953 0.45118339 1.134038213 0.521873066 0.40302063 0.513702961 0.411600184 0.51709954 1 23.43029298 -10.40242687 5.862563568 1.000133458 0.574733858 0.268268994 0.208844473 0.000376819 3.84E-05 0.209160279 0.05071307 3.96E-11 10.40242687 -0.4253996 SSPNPFVGS(ph)PPK ddPTM_HeLa_A486_30min_R1 5 SSPNPFVGSPPK 12 0 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 SSPNPFVGS(1)PPK;SSPNPFVGS(1)PPK;SSPNPFVGS(1)PPK;S(0.001)S(0.001)PNPFVGS(0.998)PPK;SSPNPFVGS(1)PPK ;;;; 115.82 0.00025885 11536790000 11625120 12143940 5581920 7057070 10010930 13616420 16012410 14260050 9459230 18019990 TRUE FALSE FALSE 10810259.12 11181609.97 7743388.913 16429215.6 8755265.811 11936564.54 12005935.66 11013347.91 10279163.67 13507667.21 0.800305408 0.827797264 0.573258786 1.216288153 0.648170085 0.883688083 0.888823767 0.815340483 0.760987335 1 23.68727521 -11.5036196 1.993132502 2.751332606 0.826392493 0.096765704 0.161282824 6851903.333 363171.0255 54365850.2 0.038942654 3.14E-12 11.5036196 -1.924940113 SSPNPFVGS(ph)PPKGLSIQNGVK ddPTM_HeLa_A485_30min_R1 2 SSPNPFVGSPPKGLSIQNGVK 21 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 SSPNPFVGS(1)PPKGLSIQNGVK;SSPNPFVGS(1)PPKGLSIQNGVK ; 164.35 7.82E-14 8554400000 1769380 1535690 816320 2345770 2220770 1799530 3233200 3501100 1384910 3345100 TRUE FALSE FALSE 2162972.477 1715275.587 1118310.738 2473913.475 1999662.341 1893750.608 2542400.407 2642449.735 1662848.734 2511228.132 0.861320582 0.683042518 0.445324231 0.985140873 0.796288603 0.75411333 1.012413159 1.052253956 0.662165541 1 21.25996167 -5.283379802 24.96005162 0.891758144 0.665210396 0.329514289 0.151212973 910.8823194 1036243.682 0.043002765 0.063843488 5.21E-06 5.283379802 -0.226547747 SSPNPFVGS(ph)PPKGLSIQNGVK ddPTM_HeLa_A486_30min_R1 2 SSPNPFVGSPPKGLSIQNGVK 21 1 P98082;P98082-3 P98082 DAB2 Disabled homolog 2 1 0 SSPNPFVGS(0.997)PPKGLS(0.003)IQNGVK;SSPNPFVGS(1)PPKGLSIQNGVK ; 133.15 4.19E-07 8680000000 2250500 1803020 789920 1349660 2002540 2472050 3449500 3281900 1272630 3434600 TRUE FALSE FALSE 2092751.572 1660142.129 1095798.179 3142076.688 1751362.76 2167073.605 2586398.615 2534683.013 1382942.593 2574553.805 0.812859909 0.644827125 0.425626443 1.220435433 0.680258753 0.841727837 1.004600724 0.984513514 0.537158163 1 21.29589099 -5.242530046 24.99545559 0.888216037 0.629476792 0.278136902 0.197421648 1124.479615 1486400.687 0.052208015 0.090236407 5.72E-06 5.242530046 -0.258739245 SSPNVANQPPS(ph)PGGK ddPTM_HeLa_A485_30min_R1 2 SSPNVANQPPSPGGK 15 0 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 1 0 SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK ; 204.23 2.06E-25 255640000 376850 357420 245840 556070 453420 399390 630340 612030 343580 767800 TRUE FALSE FALSE 460678.9824 399217.1599 336786.4463 586446.6961 408275.9127 420301.4428 495662.7096 461928.6829 412533.3545 576401.5903 0.799232671 0.692602461 0.58429132 1.017427269 0.708318505 0.729181616 0.859925992 0.801400778 0.715704747 1 19.13671479 -14 0.234503286 2.262816421 0.743958543 0.282727369 0.109973844 221.4937404 2.215555337 133.2419081 0.183423194 1.00E-14 14 -1.518857878 SSPNVANQPPS(ph)PGGK ddPTM_HeLa_A486_30min_R1 2 SSPNVANQPPSPGGK 15 0 Q5TIG5;A8MQ02;J3KN01;P55196-2;P55196-6;P55196-3;P55196-1;P55196;P55196-5 Q5TIG5 MLLT4 Afadin 1 0 SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK ; 208.87 1.20E-25 230180000 429570 418140 209500 190945 396920 471980 552450 524040 338070 617000 TRUE FALSE FALSE 399459.3613 385005.0636 290624.0106 444529.6098 347134.5925 413751.9063 414221.1668 404727.5317 367374.1798 462499.184 0.86369744 0.832444849 0.628377348 0.961146798 0.750562605 0.894600295 0.895614914 0.875088099 0.794323952 1 18.81909129 -6.144117737 1.202667987 0.88586119 0.799154852 0.145140669 0.093447812 0.99262905 2.973521626 0.043901738 0.043975345 7.18E-07 6.144117737 -0.086706339 SSPS(ph)PALEQPFR ddPTM_HeLa_A485_30min_R1 2 SSPSPALEQPFR 12 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 SS(0.001)PS(0.999)PALEQPFR;SS(0.002)PS(0.997)PALEQPFR ; 190.57 3.17E-13 322930000 468370 561660 588550 531890 666820 491280 645370 600100 547290 722600 TRUE FALSE FALSE 572557.2906 627341.2512 806279.1366 560945.8039 600429.0595 517002.6611 507481.4273 452924.5341 657126.083 542469.1185 1.055465226 1.156455234 1.486313431 1.034060345 1.106844683 0.953054549 0.935502889 0.834931462 1.211361275 1 19.04918148 -5.492140597 24.59258367 0.9995217 1.230960948 0.351559153 0.138310068 601.9343474 481587.5244 0.039382509 0.05832684 3.22E-06 5.492140597 0.231439248 SSPS(ph)PALEQPFR ddPTM_HeLa_A486_30min_R1 2 SSPSPALEQPFR 12 0 Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;Q9UMZ2-6;Q9UMZ2-9 Q9UMZ2-4 SYNRG Synergin gamma 1 0 S(0.007)S(0.002)PS(0.991)PALEQPFR;S(0.001)S(0.001)PS(0.999)PALEQPFR ; 115.57 0.000266 251460000 224888 270732 223793 95160 297154 232283 249416 277790 232351 288048 TRUE FALSE FALSE 209124.5125 249278.2103 310451.643 221537.2891 259882.1745 203626.2851 187009.4787 214543.2811 252491.3718 215918.9059 0.968532661 1.154499229 1.437815932 1.026020802 1.203610093 0.943068344 0.866109792 0.993628975 1.169380563 1 17.72013005 -6.260389316 24.99014585 0.986018859 1.166098454 0.264708316 0.135692256 129.5829904 3083936.94 0.047510493 0.044940001 5.49E-07 6.260389316 0.180079595 SSPS(ph)PEVVKPK ddPTM_HeLa_A485_30min_R1 1 SSPSPEVVKPK 11 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(0.041)S(0.029)PS(0.93)PEVVKPK 79.022 0.0037837 444220000 925800 778860 613810 1068300 1383500 1214900 1918900 1711600 1014000 1956700 TRUE FALSE FALSE 1131741.016 869940.9018 840883.8618 1126658.524 1245753.882 1278510.285 1508911.339 1291827.416 1217500.499 1468930.7 0.770452286 0.592227327 0.572446244 0.766992291 0.848068518 0.870368007 1.027217512 0.879433874 0.828834538 1 20.4863349 -5.691235969 1.959307759 0.917045664 0.640710512 0.714029158 0.075723021 0.177581734 1.400404548 0.026038279 0.035798235 2.04E-06 5.691235969 -0.276335152 SSPS(ph)PEVVKPK ddPTM_HeLa_A486_30min_R1 1 SSPSPEVVKPK 11 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(0.003)S(0.003)PS(0.993)PEVVKPK 104.7 0.00037133 299890000 815890 692770 400950 344530 769680 859590 1008000 1055100 606880 1125600 TRUE FALSE FALSE 758700.3243 637872.3822 556208.5778 802083.2516 673139.5574 753542.5255 755787.7385 814876.7627 659484.847 843742.4336 0.899208448 0.756003677 0.659216078 0.950625712 0.797802185 0.893095447 0.895756464 0.965788528 0.78161868 1 19.68644313 -5.277310586 24.92734668 0.891937652 0.769928815 0.319719799 0.084135518 905.5644095 1422279.256 0.023098709 0.034388759 5.28E-06 5.277310586 -0.122008837 SSPS(ph)TENMHFPSSISSQTR ddPTM_HeLa_A485_30min_R1 3 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.236)S(0.236)PS(0.501)T(0.028)ENMHFPSSISSQTR;S(0.038)S(0.038)PS(0.799)T(0.125)ENMHFPSSISSQTR;S(0.08)S(0.08)PS(0.783)T(0.057)ENMHFPSSISSQTR ;; 136.77 1.20E-06 1825000000 1030840 1493320 1473840 791610 1796670 1241340 1584480 1710410 1287450 1411860 TRUE FALSE FALSE 1260146.802 1667950.784 2019074.748 834853.6498 1617787.226 1306334.643 1245942.904 1290929.266 1545829.406 1059909.285 1.188919485 1.57367315 1.904950523 0.787665191 1.526344989 1.232496649 1.175518435 1.217962031 1.458454442 1 20.01550936 -5.252106439 24.9989657 1.222818632 1.557630214 0.289004839 0.254135838 902.1231204 2416398.324 0.067316039 0.114586007 5.60E-06 5.252106439 0.334811582 SSPS(ph)TENMHFPSSISSQTR ddPTM_HeLa_A486_30min_R1 2 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.027)S(0.134)PS(0.813)T(0.027)ENMHFPSSISSQTR;S(0.253)S(0.253)PS(0.451)T(0.044)ENMHFPSSISSQTR ; 112.86 3.32E-05 1270760000 766110 816890 705800 56101 944330 637390 810020 702570 747430 494110 TRUE FALSE FALSE 712409.6452 752156.6613 979104.662 130605.9632 825883.3259 558755.3023 607344.4285 542610.148 812217.8342 370381.6399 1.923447516 2.030761194 2.643502152 0.352625371 2.229817132 1.508593413 1.639780062 1.465002823 2.192921427 1 18.49865306 -6.656872335 0.05694879 4.36E-22 3.353784363 0.120605237 0.591168002 125.6997513 3.984831553 103.469172 126.4391401 2.20E-07 6.656872335 3.353784363 SSPSGASS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SSPSGASSPR 10 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 SSPSGASS(1)PR;SSPSGAS(0.007)S(0.993)PR;SSPS(0.004)GAS(0.086)S(0.909)PR;SSPSGAS(0.038)S(0.961)PR ;;; 163.83 4.92E-07 2529420000 3522990 4241600 1660570 5750380 1603830 4621930 3038960 4932480 3739660 5827950 TRUE FALSE FALSE 4306666.971 4737618.223 2274883.945 6064508.699 1444147.054 4863927.108 2389661.37 3722781.546 4490175.46 4375149.32 0.984347426 1.082847207 0.519955727 1.386126108 0.330079489 1.111716824 0.546189671 0.850892455 1.026290792 1 22.06090083 SSPSGASS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SSPSGASSPR 10 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 SSPSGAS(0.006)S(0.994)PR;SSPS(0.001)GAS(0.061)S(0.938)PR ; 113.27 0.00059239 535254000 1224190 383177 941840 300780 425867 1853310 639291 591593 1855270 1436440 TRUE FALSE FALSE 1138380.603 352812.659 1306545.671 700231.0406 372450.7898 1624667.455 479333.6301 456900.1883 2016086.297 1076746.074 1.05724147 0.32766561 1.213420418 0.650321424 0.345904015 1.508867777 0.445168681 0.424334204 1.872387878 1 20.03824663 -7.755663571 24.9988876 1.436193968 0.747003961 0.295251278 0.426151755 151.0347743 653731.139 0.290200588 0.103049382 1.76E-08 7.755663571 -0.689190007 SSPSTGS(ph)LDSGNESK ddPTM_HeLa_A486_30min_R1 1 SSPSTGSLDSGNESK 15 0 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 SSPS(0.003)T(0.09)GS(0.905)LDS(0.002)GNESK 181.52 9.36E-18 209250000 174480 165370 100700 73601 195070 212350 216700 214560 177210 253440 TRUE FALSE FALSE 162249.853 152265.4789 139693.7368 171346.8476 170602.5016 186152.416 162479.368 165709.3718 192570.7055 189976.9744 0.854050095 0.801494389 0.735319305 0.901934817 0.898016732 0.979868306 0.855258215 0.872260295 1.013652871 1 17.53546505 -5.973676403 0.300620678 1.001477669 0.748201252 0.513942529 0.058426881 2.571450929 0.424503841 0.084216772 0.228823264 1.06E-06 5.973676403 -0.253276416 SSPSVLIHS(ph)LGK ddPTM_HeLa_A486_30min_R1 2 SSPSVLIHSLGK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 SSPSVLIHS(1)LGK;SSPSVLIHS(1)LGK ; 101.61 0.00071453 0 506390 563900 367190 181884 589460 550390 643120 636350 486350 619450 TRUE FALSE FALSE 470894.676 519214.5103 509375.8017 423435.1439 515524.4303 482488.4778 482204.5738 491466.9964 528507.2096 464335.6881 1.014125531 1.118187819 1.096999035 0.911916001 1.11024081 1.039094108 1.038482689 1.058430375 1.138200709 1 18.82480864 -7.535561154 24.97410612 1.078838736 1.048588879 0.014266462 0.063865006 956.4084854 1883307.678 0.041836883 0.015828451 2.91E-08 7.535561154 -0.030249856 SSPVNNHHS(ph)PGQTPTLGQPEAR ddPTM_HeLa_A485_30min_R1 3 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 0 SSPVNNHHS(1)PGQTPTLGQPEAR;SSPVNNHHS(0.997)PGQT(0.003)PTLGQPEAR;SSPVNNHHS(1)PGQTPTLGQPEAR ;; 172.74 2.52E-14 1249480000 303444 395467 336605 301947 453183 366838 484590 490983 311976 456565 TRUE FALSE FALSE 370944.0709 441713.4255 461129.1968 318441.6 408062.5093 386045.0704 381053.3878 370568.6494 374586.7216 342751.748 1.082252893 1.288726981 1.345373728 0.929073599 1.190548295 1.126311019 1.111747467 1.081157577 1.092880558 1 18.3868045 -6.328048626 0.224870185 0.984429463 1.276190627 0.211999143 0.104521204 6.49902001 0.79938656 0.267473033 0.612393659 4.70E-07 6.328048626 0.291761164 SSPVNNHHS(ph)PGQTPTLGQPEAR ddPTM_HeLa_A486_30min_R1 2 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 0 SSPVNNHHS(1)PGQTPTLGQPEAR;S(0.006)S(0.006)PVNNHHS(0.988)PGQT(0.001)PTLGQPEAR ; 149.93 9.43E-10 928880000 148554 157503 126685 18377.8 162374 134556 152201 158587 127233 122273 TRUE FALSE FALSE 138141.1317 145021.8887 175740.8247 42784.44716 142007.5388 117955.8488 114118.7 122480.202 138261.6589 91655.04494 1.507185249 1.58225757 1.917415728 0.466798605 1.549369584 1.286954241 1.245089128 1.33631708 1.508500257 1 16.48392667 SSQAS(ph)QNRHSMEISPPVLISSSNPTAAAR ddPTM_HeLa_A485_30min_R1 1 SSQASQNRHSMEISPPVLISSSNPTAAAR 29 1 Q7Z6J0;Q7Z6J0-3;H0YA90 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 S(0.172)S(0.117)QAS(0.424)QNRHS(0.287)MEIS(0.001)PPVLISSSNPTAAAR 149.45 1.44E-09 725280000 140980 204160 173630 117920 266190 172000 223440 257090 173360 196440 TRUE FALSE FALSE 172340.5146 228034.736 237862.9623 124361.671 239687.189 181005.654 175700.2187 194038.2744 208151.7618 147471.1232 1.168639059 1.546300937 1.612946027 0.843295069 1.625316087 1.22739727 1.191421173 1.31577132 1.411474717 1 17.17007296 -12.77055198 0.261438288 1.00E-12 1.357647517 0.151030507 0.227506494 186.8230255 3.307612351 100.8704873 0.299493519 1.70E-13 12.77055198 1.357647517 SSQHGGS(ph)STSLASTK ddPTM_HeLa_A485_30min_R1 1 SSQHGGSSTSLASTK 15 0 O15075-2;O15075;O15075-3;O15075-4 O15075-2 DCLK1 Serine/threonine-protein kinase DCLK1 1 0 S(0.076)S(0.076)QHGGS(0.762)S(0.065)T(0.019)S(0.001)LASTK 90.581 0.0005086 0 128260 235020 179050 67065 270460 182800 231400 229510 169030 157250 TRUE FALSE FALSE 156790.9945 262503.5446 245288.0459 70728.59113 243532.0528 192371.1253 181959.4996 173222.3126 202952.7706 118050.469 1.328169179 2.223655246 2.077823562 0.599138587 2.062948626 1.629566803 1.541370409 1.467358107 1.719203425 1 16.84904425 -11.717257 0.224380982 2.29E-09 1.733945084 0.151720587 0.440841943 94.57161044 2.360401897 47.41672122 0.869916069 1.92E-12 11.717257 1.733945081 SSQKS(ph)PELGK ddPTM_HeLa_A485_30min_R1 3 SSQKSPELGK 10 1 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 S(0.151)S(0.151)QKS(0.698)PELGK;S(0.039)S(0.039)QKS(0.923)PELGK;S(0.168)S(0.168)QKS(0.663)PELGK ;; 87.18 0.0017915 975350000 1664450 1265180 676840 2880140 1960280 1672640 3061510 2953370 1268890 4233080 TRUE FALSE FALSE 2034701.16 1413131.795 927231.2817 3037474.755 1765107.64 1760216.844 2407393.378 2229051.377 1523544.584 3177851.06 0.64027581 0.444681569 0.291779339 0.955826657 0.555440644 0.553901618 0.757553873 0.701433558 0.479426051 1 21.59962008 -14 0.164513656 2.469556271 0.501622886 0.31999809 0.174277426 163.3631327 1.519117136 78.79736159 0.698140031 1.00E-14 14 -1.967933385 SSQKS(ph)PELGK ddPTM_HeLa_A486_30min_R1 3 SSQKSPELGK 10 1 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 S(0.012)S(0.059)QKS(0.929)PELGK;S(0.002)S(0.01)QKS(0.988)PELGK;S(0.003)S(0.025)QKS(0.972)PELGK ;; 107.61 0.00041904 737480000 1972680 1559790 627800 1179030 1453310 2218570 3025790 2559980 1410740 3685200 TRUE FALSE FALSE 1834405.319 1436186.56 870900.9731 2744841.425 1271022.308 1944865.39 2268705.338 1977128.438 1533024.079 2762401.933 0.664061698 0.519904994 0.315269463 0.993643029 0.460114907 0.704048664 0.821279956 0.71572801 0.554960544 1 21.39749182 -13.99999999 0.111810166 2.119899316 0.445755401 0.276326819 0.179498364 218.5187785 1.614580646 56.2991418 2.127900278 1.00E-14 13.99999999 -1.674143915 SSQPLASK(ac)QEK ddPTM_HeLa_A485_30min_R1 2 SSQPLASKQEK 11 1 P17096-2;A0A669KAX1;P17096;P17096-3 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 0 1 ; SSQPLASK(1)QEK;SSQPLASK(1)QEK 373.22 1.40E-122 1624340000 1053180 1085530 793840 1285400 1449120 1191470 2077080 2207300 1324070 2689200 FALSE TRUE FALSE 1287456.258 1212473.291 1087514.45 1355618.147 1304840.525 1253853.527 1633294.89 1665956.214 1589798.704 2018831.931 0.637723348 0.60058159 0.538684986 0.671486381 0.6463344 0.621078708 0.80902965 0.825207977 0.787484426 1 20.94508938 -7.460231036 0.477732981 0.997687824 0.581844862 0.862461125 0.048783676 0.314836629 0.181491026 0.054114271 0.035128136 3.47E-08 7.460231036 -0.415842961 SSQPLASK(ac)QEK ddPTM_HeLa_A486_30min_R1 2 SSQPLASKQEK 11 1 P17096-2;A0A669KAX1;P17096;P17096-3 P17096-2;P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 0 1 ; SSQPLASK(1)QEK;SSQPLASK(1)QEK 350.8 9.84E-104 2226200000 1763230 1918590 1106640 774110 1941740 2131770 2527700 2372400 1675110 2473700 FALSE TRUE FALSE 1639636.682 1766553.941 1535160.645 1802167.201 1698188.863 1868773.892 1895242.725 1832256.309 1820309.884 1854269.419 0.884249433 0.952695397 0.827905928 0.971901485 0.915826387 1.007822203 1.022096738 0.988128419 0.98168576 1 20.82241945 -5.975887385 1.53037985 1.000737546 0.900062914 0.575835233 0.038037352 0.277452258 1.331390794 0.014568679 0.01655428 1.06E-06 5.975887385 -0.100674632 SSQPS(ph)PTAVPASDS(ph)PPTKQEVK ddPTM_HeLa_A485_30min_R1 1 SSQPSPTAVPASDSPPTKQEVK 22 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 S(0.004)S(0.005)QPS(0.958)PT(0.033)AVPAS(0.006)DS(0.991)PPT(0.003)KQEVK 108.72 0.00017317 383280000 620610 422110 315810 1061500 851250 691860 1220100 1308100 585690 1679300 TRUE FALSE FALSE 758662.5534 471472.0926 432641.261 1119487.057 766496.5611 728084.7198 959415.6677 987286.424 703232.6107 1260681.415 0.601787687 0.373981949 0.343180486 0.888001555 0.608001793 0.577532683 0.761029437 0.783137129 0.557819448 1 20.26577231 -8.753097004 0.078754132 1.617822851 5.40E-13 0.434652433 0.149881357 42.58116816 1.233413784 15.23984437 9.550778256 1.77E-09 8.753097004 -1.617822851 SSQPS(ph)PTAVPASDS(ph)PPTKQEVK ddPTM_HeLa_A486_30min_R1 3 SSQPSPTAVPASDSPPTKQEVK 22 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 S(0.001)S(0.001)QPS(0.929)PT(0.07)AVPAS(0.012)DS(0.988)PPTKQEVK;S(0.03)S(0.035)QPS(0.637)PT(0.298)AVPAS(0.071)DS(0.927)PPT(0.002)KQEVK;S(0.002)S(0.003)QPS(0.993)PT(0.002)AVPAS(0.001)DS(0.997)PPT(0.002)KQEVK ;; 175.04 2.26E-14 1456560000 1635970 1445890 720190 1065140 1778570 2074630 2857250 2809360 1323550 2600700 TRUE FALSE FALSE 1521296.951 1331312.411 999066.8554 2479699.749 1555485.166 1818683.244 2142335.829 2169730.056 1438276.38 1949467.792 0.780365265 0.682910698 0.512481847 1.271988057 0.79790247 0.932912691 1.098933687 1.112985844 0.73777899 1 20.89464889 -5.246778824 24.99552504 0.991676673 0.661018415 0.487558123 0.157199096 687.5248868 1172194.281 0.041758961 0.071937175 5.67E-06 5.246778824 -0.330658259 SSQQPST(ph)PQQAPPGQPQQGTFVAHK ddPTM_HeLa_A485_30min_R1 3 SSQQPSTPQQAPPGQPQQGTFVAHK 25 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 SSQQPS(0.056)T(0.944)PQQAPPGQPQQGTFVAHK;S(0.001)S(0.001)QQPS(0.193)T(0.805)PQQAPPGQPQQGTFVAHK;S(0.001)S(0.001)QQPS(0.254)T(0.743)PQQAPPGQPQQGTFVAHK ;; 197.56 3.63E-28 2511460000 571620 575630 484170 635400 822430 586190 807680 708420 545870 858340 TRUE FALSE FALSE 698774.8969 642944.9212 663284.631 670110.2931 740545.9815 616882.002 635112.5699 534678.8842 655421.102 644371.6346 1.084428394 0.997785884 1.029351069 1.039943811 1.149252918 0.957338854 0.985630862 0.829767879 1.017147663 1 19.29753346 -6.438264913 11.87569301 0.94787222 1.053880989 0.408727458 0.06071445 0.855680328 118.0319936 0.021064991 0.018571938 3.65E-07 6.438264913 0.106008769 SSQQPST(ph)PQQAPPGQPQQGTFVAHK ddPTM_HeLa_A486_30min_R1 2 SSQQPSTPQQAPPGQPQQGTFVAHK 25 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 SSQQPS(0.02)T(0.98)PQQAPPGQPQQGTFVAHK;SSQQPS(0.093)T(0.907)PQQAPPGQPQQGTFVAHK ; 199.59 3.22E-28 1907480000 1020390 1000090 621670 312749 1044790 1007520 1152120 1161860 868980 1199330 TRUE FALSE FALSE 948865.9303 920839.2261 862397.2729 728095.4775 913742.6959 883222.4261 863847.3901 897329.8412 944303.8861 899009.9617 1.055456525 1.024281449 0.959274435 0.809885884 1.016387732 0.982438976 0.960887451 0.998131144 1.050382005 1 19.77797758 -7.509155983 4.849326174 1.02568393 0.970289296 0.099955668 0.062983143 0.439614864 28.89174632 0.043350976 0.017603041 3.10E-08 7.509155983 -0.055394634 SSRFS(ph)GGFGAR ddPTM_HeLa_A485_30min_R1 6 SSRFSGGFGAR 11 1 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1 O00571 DDX3X ATP-dependent RNA helicase DDX3X 1 0 SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR ;;;;; 166.64 2.44E-08 6168350000 818661 1206798 1049679 840507 1677430 1158887 1531282 1801600 1050698 1257649 TRUE FALSE FALSE 1000769.315 1347922.528 1437998.943 886421.7691 1510419.179 1219564.531 1204111.091 1359754.775 1261563.451 944140.2496 1.059979506 1.427671926 1.523077682 0.938866624 1.599782638 1.29171967 1.275351932 1.440204224 1.336203442 1 19.84864166 -9.894652896 4.761312045 0.999998483 1.328683754 0.203563975 0.190248684 59547872.9 2.272583823 1171.38013 0.043500209 1.27E-10 9.894652896 0.32868527 SSRFS(ph)GGFGAR ddPTM_HeLa_A486_30min_R1 6 SSRFSGGFGAR 11 1 O00571;F6S8Q4;A0A2R8Y645;A0A2U3TZJ9;O00571-2;A0A0D9SF53;A0A0D9SG12;A0A0D9SFB3;A0A2R8YF78;A0A2R8Y7T2;A0A087WVZ1 O00571 DDX3X ATP-dependent RNA helicase DDX3X 1 0 S(0.002)S(0.002)RFS(0.996)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR;SSRFS(1)GGFGAR ;;;;; 152.07 2.62E-07 5012990000 1214780 1149190 1032460 490995 1650990 1139232 1503490 1617340 965683 1302600 TRUE FALSE FALSE 1129630.195 1058123.999 1432256.162 1143061.174 1443907.439 998685.1387 1127300.9 1249106.988 1049389.18 976420.4815 1.156909566 1.083676571 1.466843629 1.170664888 1.478776272 1.022802325 1.15452402 1.279271597 1.074730815 1 19.89714303 -6.297655147 24.99996427 1.126736392 1.266211202 0.254173567 0.139082821 1016.791118 701893.8887 0.048770181 0.043012667 5.04E-07 6.297655147 0.13947481 SSRGQEEIS(ph)GALPVASPASSR ddPTM_HeLa_A486_30min_R1 1 SSRGQEEISGALPVASPASSR 21 1 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 0 S(0.007)S(0.139)RGQEEIS(0.597)GALPVAS(0.242)PAS(0.007)S(0.007)R 145.52 2.64E-08 909670000 152550 169120 149650 72061 238050 169440 214180 225540 117630 178080 TRUE FALSE FALSE 141857.0328 155718.3153 207598.4878 167761.6498 208191.5493 148536.2155 160589.8986 174189.4655 127826.2631 133487.6089 1.062698133 1.166537603 1.555189201 1.25675822 1.559632021 1.112734109 1.203032251 1.304911122 0.957588979 1 17.0263463 -7.761412087 24.99999934 0.978794347 1.283945399 0.363029282 0.158192787 0.768297166 708857.3684 0.126900642 0.04084176 1.73E-08 7.761412087 0.305151051 SSRGQEEISGALPVAS(ph)PASSR ddPTM_HeLa_A486_30min_R1 1 SSRGQEEISGALPVASPASSR 21 1 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 0 S(0.102)S(0.102)RGQEEIS(0.018)GALPVAS(0.775)PAS(0.001)S(0.001)R 141.3 2.10E-07 812000000 197430 189900 191790 97199 292310 203090 284540 290890 159650 228630 TRUE FALSE FALSE 183591.1765 174851.6324 266056.2243 226284.1842 255645.7541 178034.8207 213345.0824 224660.6971 173488.5905 171379.5599 1.071254802 1.020259549 1.552438485 1.320368569 1.491693375 1.038833457 1.24486889 1.310895519 1.012306197 1 17.38683553 -6.286898629 24.96015901 1.148529807 1.292284005 0.176405173 0.178711935 1718.94861 1685245.523 0.06629543 0.058484496 5.17E-07 6.286898629 0.143754199 SSRPDTLLSPEQPVCPAGGSGGPPSSAS(ph)PEVEAGPQGCATEPRPHR ddPTM_HeLa_A485_30min_R1 1 SSRPDTLLSPEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHR 46 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SSRPDTLLSPEQPVCPAGGSGGPPS(0.192)S(0.158)AS(0.586)PEVEAGPQGCAT(0.064)EPRPHR 86.366 1.15E-05 772910000 61041 60177 76394 52861 66236 42104 72849 61995 66633 70481 TRUE FALSE FALSE 74619.35986 67214.17668 104655.3196 55748.66258 59641.31127 44308.50033 57284.21603 46790.62905 80005.63191 52911.38381 1.410270428 1.270315986 1.977935788 1.05362322 1.12719243 0.837409592 1.08264445 0.884320645 1.512068409 1 15.69129053 -5.330205331 24.92770447 1.05930538 1.524589213 0.456323039 0.2401669 142.145975 51527.51491 0.065587578 0.097282115 4.68E-06 5.330205331 0.465283834 SSRPDTLLSPEQPVCPAGGSGGPPSSAS(ph)PEVEAGPQGCATEPRPHR ddPTM_HeLa_A486_30min_R1 2 SSRPDTLLSPEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHR 46 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SSRPDTLLSPEQPVCPAGGSGGPPS(0.028)S(0.099)AS(0.873)PEVEAGPQGCATEPRPHR;SSRPDTLLSPEQPVCPAGGS(0.002)GGPPS(0.307)S(0.307)AS(0.331)PEVEAGPQGCAT(0.054)EPRPHR ; 235.63 3.15E-53 985910000 95522 100662 75202 22774.7 107491 93178 97839 121239 95311 111230 TRUE FALSE FALSE 88826.40108 92685.17652 104322.2284 53020.65257 94008.47647 81682.64572 73358.64736 93635.52633 103572.6342 83377.28401 1.065354936 1.111635832 1.251206844 0.635912445 1.127507061 0.97967506 0.879839734 1.123034019 1.242216456 1 16.34736676 -9.86820391 7.660039101 1 1.039939946 0.005221594 0.172745619 2.52E-10 0 0.166750281 0.040442884 1.35E-10 9.86820391 0.039939946 SSRPMYGAVTSFLHSLIIQNEPR ddPTM_HeLa_A485_30min_R1 4 SSRPMYGAVTSFLHSLIIQNEPR 23 1 D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAJ6 FBXO4 F-box only protein 4 0 0 ;;; ;;; 202.43 2.05E-29 46277900 29281.7 47299.1 47463.1 26358.8 58060 33199.5 50823 56259.8 33614.5 48147.9 FALSE FALSE TRUE 35795.31314 52830.3183 65021.67579 27798.7145 52279.34254 34937.77448 39964.25086 42461.99584 40360.62182 36145.51463 0.990311343 1.461600944 1.798886431 0.769077845 1.446357676 0.966586722 1.105648966 1.174751453 1.116614945 1 15.14152901 -5.266388582 24.9991545 1.101269083 1.421399703 0.281149194 0.243605406 545.161921 2753695.254 0.066524946 0.102243146 5.42E-06 5.266388582 0.32013062 SSRPMYGAVTSFLHSLIIQNEPR ddPTM_HeLa_A486_30min_R1 2 SSRPMYGAVTSFLHSLIIQNEPR 23 1 D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAJ6 FBXO4 F-box only protein 4 0 0 ; ; 181.29 5.37E-24 17434800 21109 19763.5 16880.4 5605.1 25500 18398.5 26389 24409 21190 18988.8 FALSE FALSE TRUE 19629.36811 18197.36828 23416.94295 13048.95607 22301.55222 16128.68013 19786.19309 18851.60354 23026.76626 14233.88088 1.379059462 1.278454445 1.645155186 0.916753215 1.566793512 1.133118948 1.390077186 1.324417683 1.617743358 1 13.79704145 SSRS(ph)S(ph)PELTR ddPTM_HeLa_A486_30min_R1 1 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.023)S(0.01)RS(0.97)S(0.96)PELT(0.038)R 104.81 0.00080876 0 942130 1163500 896360 415040 1338800 1049900 1140500 1173900 1010900 1091600 TRUE FALSE FALSE 876091.5522 1071300.023 1243454.597 966234.095 1170875.22 920374.0126 855134.837 906628.5961 1098525.626 818256.2549 1.070681155 1.309247581 1.519639587 1.180845352 1.430939529 1.124799239 1.045069722 1.108000814 1.342520292 1 19.6421932 -6.292220814 22.83412769 1.125889925 1.307988436 0.281629227 0.142135496 319.8669578 237280.2727 0.049797256 0.043925699 5.10E-07 6.292220814 0.182098511 SSRS(ph)SPELTRK ddPTM_HeLa_A485_30min_R1 1 SSRSSPELTRK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.028)S(0.028)RS(0.472)S(0.472)PELTRK 48.527 0.023678 164650000 68470 117980 66317 31099 132640 203450 195460 442310 81778 53539 TRUE FALSE FALSE 83700.91528 131776.7347 90850.41798 32797.85962 119433.8959 214102.3274 153698.3742 333832.779 98190.09449 40192.71261 2.082489831 3.27862257 2.260370402 0.816015081 2.971531109 5.326894193 3.824035857 8.305803647 2.442982524 1 15.29464633 -6.078789839 5.121601074 4.596637589 2.167066601 0.1960869 1.886284373 0.295511625 13.66289764 0.601135152 0.609056371 8.34E-07 6.078789839 -2.429570988 SSRSS(ph)PELTR ddPTM_HeLa_A485_30min_R1 6 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.001)S(0.014)RS(0.259)S(0.719)PELT(0.007)R;SSRS(0.044)S(0.956)PELTR;S(0.003)S(0.003)RS(0.057)S(0.936)PELTR;S(0.001)S(0.001)RS(0.012)S(0.985)PELTR;S(0.001)S(0.001)RS(0.238)S(0.761)PELTR;S(0.024)S(0.024)RS(0.234)S(0.718)PELTR ;;;;; 119.79 0.00013578 4090320000 329077 733738 626408 318606 1111456 896422 1144300 2055756 631422 521068 TRUE FALSE FALSE 402279.0433 819542.2764 858142.3862 336010.639 1000795.538 943357.2698 899810.9569 1551578.618 758142.6037 391175.3371 1.028385497 2.095076552 2.19375381 0.858977055 2.558432097 2.411597001 2.300275277 3.966453072 1.938114527 1 18.57745589 -5.80197913 24.83509609 2.510148002 1.629814216 0.187418875 0.792154561 210.6744584 129060.3089 0.238438541 0.270367259 1.58E-06 5.80197913 -0.880333786 SSRSS(ph)PELTR ddPTM_HeLa_A486_30min_R1 5 SSRSSPELTR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.004)S(0.004)RS(0.216)S(0.776)PELTR;SSRS(0.106)S(0.894)PELTR;S(0.072)S(0.072)RS(0.407)S(0.45)PELTR;S(0.029)S(0.029)RS(0.117)S(0.825)PELTR;S(0.238)S(0.238)RS(0.238)S(0.286)PELTR ;;;; 118.24 0.00017183 3411630000 525730 405334 538364 246375 997584 407640 611097 789972 331062 477050 TRUE FALSE FALSE 488879.0419 373213.8576 746832.9587 573573.4511 872457.7126 357349.5214 458194.0671 610112.6206 359758.7207 357593.5749 1.367135978 1.043681665 2.088496581 1.603981423 2.439802541 0.999317511 1.281326341 1.706162144 1.006054767 1 18.44796129 -7.656286581 0.818792884 0.990707299 1.620746027 0.188171606 0.43020064 1.074307373 1.505691126 0.420084513 0.164489307 2.21E-08 7.656286581 0.630038728 SSRSS(ph)PELTRK ddPTM_HeLa_A485_30min_R1 2 SSRSSPELTRK 11 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.005)S(0.005)RS(0.015)S(0.976)PELTRK;S(0.023)S(0.023)RS(0.064)S(0.889)PELTRK ; 82.515 0.0024789 139980000 108386 210480 116093 68371 240550 308230 342040 780670 142027 114352 TRUE FALSE FALSE 132496.0918 235093.8051 159040.6317 72105.93461 216599.9974 324368.4462 268960.3598 589209.4585 170530.5162 85846.15089 1.543413309 2.738548003 1.85262391 0.839943712 2.523118336 3.778485614 3.133050894 6.863551276 1.986466654 1 16.38946583 -6.110944304 3.744171086 3.702617422 1.807702718 0.183613139 1.500487943 0.336988325 8.47556423 0.494954582 0.501762372 7.75E-07 6.110944304 -1.894914705 SSS(ph)APLIHGLSDLSQVFQPYTLR ddPTM_HeLa_A485_30min_R1 2 SSSAPLIHGLSDLSQVFQPYTLR 23 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 S(0.006)S(0.006)S(0.988)APLIHGLSDLSQVFQPYTLR;S(0.003)S(0.015)S(0.982)APLIHGLSDLSQVFQPYTLR ; 349.64 1.33E-141 4838400000 279950 361430 393760 299820 509450 335810 446810 542610 357810 424500 TRUE FALSE FALSE 342223.9117 403696.0945 539428.2097 316198.4074 458727.3692 353392.4923 351345.3934 409534.0467 429619.185 318679.9623 1.073879604 1.266775895 1.692695724 0.992213019 1.439460975 1.108925989 1.102502306 1.285095064 1.348121111 1 18.28174878 -6.285629822 24.92709871 1.182595683 1.297042274 0.0849656 0.200885892 2303.752073 2373898.59 0.070376003 0.062099613 5.18E-07 6.285629822 0.114446591 SSS(ph)APLIHGLSDLSQVFQPYTLR ddPTM_HeLa_A486_30min_R1 2 SSSAPLIHGLSDLSQVFQPYTLR 23 0 G1UD79;Q7Z309-4;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 S(0.129)S(0.129)S(0.742)APLIHGLSDLSQVFQPYTLR;S(0.005)S(0.024)S(0.971)APLIHGLSDLSQVFQPYTLR ; 346.88 1.60E-141 12362200000 462050 607550 495380 82358 684030 562570 623500 624260 560000 484900 TRUE FALSE FALSE 429662.681 559405.5253 687204.4027 191733.5861 598232.5791 493165.8332 467493.7053 482129.6255 608541.2509 363477.8838 1.18208755 1.539035937 1.890636084 0.527497255 1.645856889 1.35679736 1.286168227 1.326434556 1.674218097 1 18.47150806 SSS(ph)APNVHINTIEPVNIDDLIR ddPTM_HeLa_A485_30min_R1 3 SSSAPNVHINTIEPVNIDDLIR 22 0 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.162)S(0.162)S(0.676)APNVHINTIEPVNIDDLIR;S(0.026)S(0.105)S(0.869)APNVHINTIEPVNIDDLIR;S(0.116)S(0.116)S(0.768)APNVHINTIEPVNIDDLIR ;; 289.94 2.53E-87 1502520000 178250 222540 224389 209373 288778 224808 279155 302052 212959 291797 TRUE FALSE FALSE 217901.0975 248564.1172 307399.8287 220810.5168 260026.2484 236578.5993 219511.2538 227973.2734 255697.9179 219057.378 0.994721563 1.134698678 1.403284525 1.008003103 1.187023467 1.07998462 1.002071949 1.040701187 1.167264578 1 17.74094928 -6.422760947 5.332143527 1.05395832 1.151162232 0.131712115 0.113477669 0.480474868 20.51489689 0.041270651 0.035985594 3.78E-07 6.422760947 0.097203913 SSS(ph)APNVHINTIEPVNIDDLIR ddPTM_HeLa_A486_30min_R1 5 SSSAPNVHINTIEPVNIDDLIR 22 0 H7C560;P15056;A0A2R8YDP5;A0A2U3TZI2;A0A2R8Y8E0;A0A2R8Y679;A0A2R8Y492 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.153)S(0.153)S(0.693)APNVHINTIEPVNIDDLIR;S(0.088)S(0.088)S(0.824)APNVHINTIEPVNIDDLIR;SS(0.001)S(0.999)APNVHINTIEPVNIDDLIR;S(0.146)S(0.146)S(0.709)APNVHINTIEPVNIDDLIR;S(0.198)S(0.198)S(0.605)APNVHINTIEPVNIDDLIR ;;;; 314.57 1.76E-102 3156266000 451701 511168 458446 115045 546732 479114 551835 538069 426268 461563 TRUE FALSE FALSE 420039.0925 470661.186 635968.5688 267830.5741 478155.7745 420005.786 413760.0463 415562.4347 463217.2535 345984.6205 1.21403978 1.360352912 1.838141152 0.774111212 1.382014535 1.213943514 1.195891441 1.201100887 1.3388377 1 18.40034838 -13.96301056 0.058090782 3.41E-09 1.722403227 0.113279219 0.245600716 945.6298697 4.039628836 138.2548362 24.56234173 1.09E-14 13.96301056 1.722403223 SSS(ph)ASS(ph)PEMK ddPTM_HeLa_A485_30min_R1 2 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SS(0.017)S(0.981)AS(0.045)S(0.956)PEMK;SS(0.001)S(0.999)AS(0.001)S(1)PEMK ; 195.09 3.72E-10 541570000 1927190 1606140 1156300 2973400 2162390 1586520 2558800 2053820 1490200 3599900 TRUE FALSE FALSE 2355886.767 1793964.101 1584063.488 3135829.313 1947094.859 1669587.734 2012091.477 1550117.425 1789269.471 2702511.181 0.871739878 0.663813757 0.586145026 1.160339071 0.720476153 0.61779124 0.744526606 0.573584093 0.662076621 1 21.36586916 -5.980091587 24.99968498 0.691683941 0.811055371 0.059837599 0.177786925 626.0099893 786098.7865 0.054942921 0.062292455 1.05E-06 5.980091587 0.11937143 SSS(ph)ASS(ph)PEMK ddPTM_HeLa_A486_30min_R1 3 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 SSS(0.999)AS(0.001)S(0.999)PEMK;SSS(1)AS(0.001)S(0.999)PEMK;SSS(1)ASS(1)PEMK ;; 260.28 1.17E-29 1226430000 3493240 3452810 1750090 1778030 2999110 3847220 4519610 4227710 2787510 5305100 TRUE FALSE FALSE 3248381.915 3179196.761 2427771.717 4139343.697 2622933.658 3372589.112 3388755.774 3265152.723 3029133.611 3976668.43 0.816860136 0.799462368 0.610503933 1.040907425 0.659580678 0.84809412 0.852159498 0.821077437 0.761726471 1 21.92312885 -14 0.316567587 2.823615601 0.793319944 0.224346501 0.110164504 468.5014556 4.19614345 571.552942 0.095806574 1.00E-14 14 -2.030295657 SSS(ph)ASSPEMK ddPTM_HeLa_A485_30min_R1 3 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSS(0.992)AS(0.008)SPEMK;SS(0.002)S(0.995)AS(0.002)SPEMK;SSS(0.998)AS(0.001)SPEMK ;; 261.49 1.47E-26 4678530000 6241200 6159600 4622600 8424600 7776300 6856400 9913000 9449300 5443200 10509300 TRUE FALSE FALSE 7629533.408 6879911.639 6332692.102 8884814.566 7002064.268 7215390.502 7795006.568 7131844.359 6535600.312 7889524.919 0.967045986 0.872031169 0.802670904 1.126153305 0.887514057 0.91455323 0.988019766 0.903963728 0.82838959 1 22.911507 -3.884724046 17.04545165 0.924465787 4.895020022 0.019874585 0.088949661 652.1704059 96403.4026 0.021154542 32.65505133 0.0001304 3.884724046 3.970554235 SSS(ph)ASSPEMK ddPTM_HeLa_A486_30min_R1 5 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSS(1)ASSPEMK;SS(0.019)S(0.981)ASSPEMK;S(0.001)S(0.029)S(0.97)ASSPEMK;SSS(0.999)AS(0.001)SPEMK;SS(0.005)S(0.986)AS(0.009)SPEMK ;;;; 236.16 9.07E-21 5622300000 9616980 8851220 5233680 3904130 8945090 9724200 11812830 11381250 7392170 12537230 TRUE FALSE FALSE 8942879.364 8149817.092 7260301.059 9089011.944 7823113.403 8524527.072 8857134.991 8789987.826 8032929.247 9397826.004 0.951590225 0.867202381 0.772551126 0.967139841 0.83243863 0.907074367 0.942466373 0.935321405 0.854764628 1 23.16389563 -6.514387687 21.96238159 0.92732285 0.875958641 0.14893 0.061268175 169.3606189 438067.2989 0.022113866 0.018049575 3.06E-07 6.514387687 -0.051364208 SSS(ph)CESLGSQPAAARPPSVDSLSSASTSHSENSVHTK ddPTM_HeLa_A485_30min_R1 1 SSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 37 1 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 S(0.163)S(0.163)S(0.673)CESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 182.21 2.92E-21 395540000 15593 22954 26182 3803 39814 15382 23851 25293 24281 17485 TRUE FALSE FALSE 19061.60905 25638.27063 35867.81132 4010.74826 35849.97836 16187.37773 18755.03901 19089.85209 29153.97398 13126.31129 1.452167988 1.953196908 2.732512626 0.305550293 2.73115406 1.233200812 1.428812604 1.454319624 2.221033262 1 13.68017393 SSS(ph)CESLGSQPAAARPPSVDSLSSASTSHSENSVHTK ddPTM_HeLa_A486_30min_R1 1 SSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 37 1 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 S(0.124)S(0.124)S(0.725)CES(0.027)LGSQPAAARPPSVDSLSSASTSHSENSVHTK 264.54 3.04E-65 605030000 202280 242790 197610 14337 328590 156580 193370 184070 239290 56375 TRUE FALSE FALSE 188101.2166 223550.4362 274129.8842 33377.26055 287375.1782 137262.7516 144986.7807 142161.2792 260031.8499 42258.33306 4.451221876 5.290091208 6.487001837 0.789838551 6.800438101 3.248181877 3.430963084 3.364100496 6.153386351 1 15.36694824 -10.79850487 2.634938609 1.85E-05 4.395773101 0.259954428 1.742488798 5442993.126 3380795.954 34471336.95 0.418172974 1.59E-11 10.79850487 4.395754601 SSS(ph)DMDLQK ddPTM_HeLa_A485_30min_R1 4 SSSDMDLQK 9 0 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 S(0.001)S(0.02)S(0.979)DMDLQK;SS(0.032)S(0.968)DMDLQK;SS(0.004)S(0.996)DMDLQK;SS(0.007)S(0.993)DMDLQK ;;; 214.64 5.45E-11 1186450000 3078090 2397800 2130660 4557200 3411430 2642480 4094540 3587610 2466430 5427230 TRUE FALSE FALSE 3762800.501 2678201.852 2918879.798 4806148.297 3071776.051 2780836.167 3219708.08 2707743.022 2961419.878 4074321.442 0.923540412 0.657336906 0.716408816 1.179619322 0.753935617 0.682527436 0.790244002 0.664587481 0.726849837 1 21.95812837 -5.946799856 24.99996035 0.749100723 0.858625737 0.078367962 0.156430961 239.507605 112548.6967 0.04903652 0.055602182 1.13E-06 5.946799856 0.109525014 SSS(ph)DMDLQK ddPTM_HeLa_A486_30min_R1 4 SSSDMDLQK 9 0 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 S(0.005)S(0.037)S(0.958)DMDLQK;SS(0.002)S(0.998)DMDLQK;SS(0.006)S(0.994)DMDLQK;S(0.002)S(0.004)S(0.994)DMDLQK ;;; 199.19 9.80E-10 949910000 1989070 1911620 944280 768620 1770350 2363770 2597870 2583340 1721110 2631430 TRUE FALSE FALSE 1849646.465 1760136.269 1309930.505 1789386.204 1548296.195 2072152.09 1947855.449 1995169.876 1870297.201 1972502.8 0.937715508 0.892336512 0.664095638 0.907165355 0.784939922 1.050519214 0.987504529 1.01149153 0.948184814 1 20.91159592 -6.26114913 24.99981442 0.999506022 0.834575349 0.538959276 0.075029804 21.25619703 1830892.101 0.025692191 0.024199463 5.48E-07 6.26114913 -0.164930674 SSS(ph)DMDLQKK ddPTM_HeLa_A485_30min_R1 3 SSSDMDLQKK 10 1 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 S(0.187)S(0.137)S(0.676)DMDLQKK;S(0.003)S(0.001)S(0.996)DMDLQKK;S(0.011)S(0.081)S(0.908)DMDLQKK ;; 165.51 2.56E-07 2023850000 2665120 2016030 1294930 3679600 2883810 2838560 4768860 4702510 1968060 4718060 TRUE FALSE FALSE 3257966.749 2251787.171 1773978.494 3880607.231 2596687.751 2987182.612 3749954.103 3549212.049 2363031.59 3541934.471 0.919826941 0.635750658 0.500850173 1.095618019 0.733126988 0.843376024 1.058730514 1.00205469 0.667158472 1 21.75610609 -5.260519844 24.99985031 0.909895094 0.680503406 0.297286899 0.161060233 105.008327 2854874.736 0.044461963 0.07164562 5.49E-06 5.260519844 -0.229391688 SSS(ph)DMDLQKK ddPTM_HeLa_A486_30min_R1 4 SSSDMDLQKK 10 1 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 S(0.002)S(0.048)S(0.95)DMDLQKK;S(0.02)S(0.084)S(0.896)DMDLQKK;S(0.137)S(0.099)S(0.764)DMDLQKK;S(0.075)S(0.075)S(0.851)DMDLQKK ;;; 172.57 1.17E-07 1922550000 3797420 2826680 1205390 1725190 2641980 3824570 4977090 5094710 2438950 5600920 TRUE FALSE FALSE 3531240.468 2602683.582 1672149.289 4016329.506 2310598.233 3352733.439 3731769.44 3934755.75 2650360.15 4198413.176 0.841089316 0.619920783 0.39828126 0.95663036 0.550350367 0.798571579 0.888852355 0.937200696 0.631276637 1 22.00141272 -6.478516958 7.490970213 0.857170487 0.670707755 0.2267003 0.167604717 0.410819654 61.07256934 0.058457421 0.050814732 3.32E-07 6.478516958 -0.186462732 SSS(ph)DPPAVHPPLPPLR ddPTM_HeLa_A486_30min_R1 1 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 S(0.104)S(0.104)S(0.792)DPPAVHPPLPPLR 167.28 3.67E-12 255300000 416600 417050 344490 140440 493910 374400 440570 448350 370770 465010 TRUE FALSE FALSE 387398.4913 384001.4391 477885.7538 326951.4174 431959.2023 328210.3346 330334.7261 346270.4924 402908.6421 348568.4693 1.11139855 1.101652826 1.370995359 0.937983341 1.23923774 0.941595019 0.947689637 0.993407387 1.155895262 1 18.41108255 -6.26809122 24.94897676 1.003553684 1.149690832 0.277197171 0.11656396 710.7177692 2665672.699 0.039770346 0.035880398 5.39E-07 6.26809122 0.146137148 SSS(ph)EITLSECDAEDAGEPR ddPTM_HeLa_A486_30min_R1 1 SSSEITLSECDAEDAGEPR 19 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 SSS(1)EITLSECDAEDAGEPR 499.3 0 0 69841 99240 83958 35432 103880 104140 105280 107090 79313 84877 TRUE FALSE FALSE 64945.50656 91375.86097 116468.7861 82487.48663 90850.40176 91292.26562 78937.83046 82707.94476 86187.9147 63623.24674 1.020782652 1.436202421 1.830601109 1.296499171 1.427943502 1.434888508 1.240707359 1.299964227 1.354660743 1 15.95726638 -8.725035721 0.465073258 0.967478363 1.424071215 0.256783172 0.192273017 3.938257304 1.342011733 0.479730585 0.113762165 1.88E-09 8.725035721 0.456592852 SSS(ph)ESYTQSFQSR ddPTM_HeLa_A485_30min_R1 4 SSSESYTQSFQSR 13 0 Q9BTU6;E9PAM4 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 0 SS(0.001)S(0.998)ESYTQSFQSR;SSS(1)ESYTQSFQSR;SSS(0.998)ES(0.002)YTQSFQSR;SSS(1)ESYTQSFQSR ;;; 340.39 1.28E-100 1288310000 1234720 1277510 1002900 1124830 1227880 996130 1537400 1445400 971440 1836670 TRUE FALSE FALSE 1509379.204 1426903.682 1373914.444 1186276.615 1105627.956 1048285.826 1208921.931 1090913.384 1166399.097 1378821.97 1.094687521 1.034871588 0.996440783 0.860355173 0.801864185 0.760276416 0.876778842 0.791192342 0.845938868 1 20.39500476 -5.134298245 2.050731642 0.831654655 1.06870002 0.671196059 0.063083629 0.174535777 1.426696018 0.017843027 0.040027663 7.34E-06 5.134298245 0.237045365 SSS(ph)ESYTQSFQSR ddPTM_HeLa_A486_30min_R1 3 SSSESYTQSFQSR 13 0 Q9BTU6;E9PAM4 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 0 S(0.002)S(0.011)S(0.987)ESYTQSFQSR;S(0.001)S(0.036)S(0.963)ESYTQSFQSR;S(0.033)S(0.033)S(0.933)ESYTQSFQSR ;; 180.17 4.68E-17 669930000 886716 800270 719052 291674 974110 994617 939980 875892 1009283 1086890 TRUE FALSE FALSE 824561.7874 736853.6907 997488.1913 679031.8124 851928.0406 871911.2671 704787.0619 676470.5122 1096768.463 814725.6695 1.01207292 0.904419387 1.224324001 0.833448408 1.045662451 1.070190003 0.865060582 0.83030465 1.346181303 1 19.63595484 -7.756679861 24.99999996 1.173090633 0.976651747 0.24605515 0.139865558 151.306797 794792.044 0.097461983 0.034163196 1.75E-08 7.756679861 -0.196438886 SSS(ph)ETILSSLAGSDIVK ddPTM_HeLa_A485_30min_R1 4 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(0.003)S(0.031)S(0.966)ETILSSLAGSDIVK;S(0.101)S(0.101)S(0.797)ETILSSLAGSDIVK;SS(0.008)S(0.992)ETILSSLAGSDIVK;S(0.098)S(0.098)S(0.803)ETILSSLAGSDIVK ;;; 448.38 1.01E-193 1508160000 2286160 2241070 1653760 2576170 2865640 2164350 3121290 3205810 1846400 3013890 TRUE FALSE FALSE 2794708.405 2503143.642 2265554.643 2716899.644 2580326.82 2277672.019 2454400.893 2419580.071 2216955.544 2262582.69 1.235185091 1.106321397 1.001313522 1.200795735 1.140434262 1.006669073 1.084778428 1.069388572 0.979834043 1 21.10953909 -1.000000001 0.144386385 0.968613747 1.704291005 0.413321068 0.064583537 82.36626643 0.788334915 0.266376171 12.58773494 0.1 1.000000001 0.735677258 SSS(ph)ETILSSLAGSDIVK ddPTM_HeLa_A486_30min_R1 3 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 SS(0.001)S(0.999)ETILSSLAGSDIVK;S(0.098)S(0.098)S(0.805)ETILSSLAGSDIVK;S(0.103)S(0.103)S(0.794)ETILSSLAGSDIVK ;; 454.17 2.43E-194 1289990000 1929522 1866083 1113469 790322 1871011 2084078 2347720 2403780 1549446 2199900 TRUE FALSE FALSE 1794272.472 1718207.787 1544634.017 1839909.557 1636331.354 1826965.646 1760295.624 1856491.768 1683753.227 1649030.721 1.088077044 1.041950138 0.93669208 1.11575214 0.99229889 1.107902735 1.067472911 1.125807873 1.021056312 1 20.65318685 -6.267611465 24.87711628 1.072500014 1.034372513 0.053207842 0.057357613 1167.45962 4705523.217 0.019213412 0.017387201 5.40E-07 6.267611465 -0.038127501 SSS(ph)FGSVSTSSNSSK ddPTM_HeLa_A485_30min_R1 4 SSSFGSVSTSSNSSK 15 0 E5RG30;E5RJ65;E5RHF1;E5RGS8;E5RH07;E5RGQ6;A0A0C4DGW2;P57768-2;P57768 E5RG30 SNX16 Sorting nexin-16 1 0 SSS(0.997)FGS(0.003)VSTSSNSSK;SS(0.004)S(0.996)FGSVSTSSNSSK;S(0.04)S(0.04)S(0.92)FGSVSTSSNSSK;SS(0.003)S(0.997)FGSVSTSSNSSK ;;; 300.4 1.90E-67 1017560000 1612860 1621580 1272320 1872010 2146560 1930110 2789930 2887830 1802200 2986030 TRUE FALSE FALSE 1971635.143 1811209.675 1743004.114 1974273.166 1932840.949 2031167.575 2193838.664 2179585.165 2163885.009 2241667.675 0.879539445 0.807974213 0.777547954 0.880716258 0.862233493 0.906096652 0.978663648 0.972305212 0.965301429 1 21.09614099 -6.375771041 1.116326695 0.984158827 0.825607441 0.829599029 0.029567653 0.194063864 0.499610375 0.016972758 0.013767265 4.21E-07 6.375771041 -0.158551386 SSS(ph)FGSVSTSSNSSK ddPTM_HeLa_A486_30min_R1 3 SSSFGSVSTSSNSSK 15 0 E5RG30;E5RJ65;E5RHF1;E5RGS8;E5RH07;E5RGQ6;A0A0C4DGW2;P57768-2;P57768 E5RG30 SNX16 Sorting nexin-16 1 0 SS(0.059)S(0.921)FGS(0.02)VSTSSNSSK;S(0.001)S(0.057)S(0.942)FGSVSTSSNSSK;SSS(1)FGSVSTSSNSSK ;; 343.53 2.58E-91 811500000 1485730 1416530 816760 482910 1413810 1463780 1707370 1696630 1168750 1730430 TRUE FALSE FALSE 1381587.999 1304279.004 1133031.346 1124238.885 1236476.767 1283193.706 1280167.967 1310344.386 1270058.191 1297119.065 1.065120417 1.005519878 0.873498337 0.866719884 0.953248472 0.989264394 0.986931734 1.010195919 0.97913771 1 20.30687948 -6.253758622 4.804190735 0.993709975 0.946227942 0.115048128 0.054641674 0.440991742 29.77126202 0.021185013 0.020023037 5.57E-07 6.253758622 -0.047482032 SSS(ph)FSELCHR ddPTM_HeLa_A485_30min_R1 2 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 S(0.182)S(0.182)S(0.628)FS(0.008)ELCHR;S(0.277)S(0.277)S(0.437)FS(0.008)ELCHR ; 177.04 3.55E-08 610890000 311260 358370 400820 331980 463410 331430 432300 358910 359760 505770 TRUE FALSE FALSE 380498.7132 400278.2541 549099.9975 350115.2268 417271.2733 348783.1623 339935.5734 270886.7598 431960.5321 379690.847 1.002127695 1.0542215 1.446176546 0.922106049 1.098976382 0.918597762 0.895295676 0.713440321 1.137663801 1 18.5344657 -5.950654764 1.575547037 0.912950275 1.139877243 0.213869816 0.161792135 0.528266387 2.68976065 0.062745447 0.072568978 1.12E-06 5.950654764 0.226926969 SSS(ph)FSELCHR ddPTM_HeLa_A486_30min_R1 2 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 S(0.277)S(0.277)S(0.439)FS(0.007)ELCHR;S(0.244)S(0.244)S(0.286)FS(0.227)ELCHR ; 152.67 2.18E-06 836020000 643780 746600 604390 115733 829080 662850 669990 708140 728320 589180 TRUE FALSE FALSE 598654.3465 687436.6969 838425.9941 269432.2728 725089.0555 581074.3064 502351.4156 546911.9806 791451.364 441645.4931 1.355508787 1.556535066 1.898414016 0.610064581 1.641789777 1.315703014 1.137453961 1.238350644 1.792051264 1 18.75252926 SSS(ph)FSLPSR ddPTM_HeLa_A485_30min_R1 3 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 0 SS(0.003)S(0.997)FSLPSR;SS(0.007)S(0.993)FSLPSR;SS(0.011)S(0.986)FS(0.002)LPSR ;; 188.49 2.58E-14 493510000 1006980 1247600 1219060 1138240 1594430 1282470 1653980 1722830 1123310 1538200 TRUE FALSE FALSE 1230979.227 1393495.967 1670041.023 1200419.169 1435682.951 1349618.146 1300593.661 1300303.241 1348748.013 1154755.048 1.066008959 1.206745941 1.446229679 1.039544422 1.243279216 1.168748427 1.126293982 1.126042482 1.167994905 1 20.13915542 -8.618824934 0.344370556 0.971096367 1.216178441 0.218179922 0.105518504 4.893925679 1.079475254 0.359484873 0.105066229 2.41E-09 8.618824934 0.245082073 SSS(ph)FSLPSR ddPTM_HeLa_A486_30min_R1 3 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 0 SS(0.011)S(0.988)FS(0.001)LPSR;SS(0.01)S(0.99)FSLPSR;SS(0.006)S(0.994)FSLPSR ;; 225.01 3.21E-12 679530000 1300520 1523680 1191250 508696 1657130 1416100 1663320 1709650 1280490 1597430 TRUE FALSE FALSE 1209360.264 1402938.048 1652533.903 1184269.996 1449277.303 1241395.98 1247139.743 1320400.016 1391483.904 1197423.13 1.009969019 1.17163099 1.380075147 0.989015467 1.210330138 1.0367229 1.04151967 1.102701278 1.162065329 1 20.19150161 SSS(ph)GYFSFDTDR ddPTM_HeLa_A485_30min_R1 1 SSSGYFSFDTDR 12 0 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 0 S(0.002)S(0.037)S(0.961)GYFSFDTDR 132.99 2.23E-05 45108000 104340 102250 106960 121350 129150 81447 93277 89756 91824 148950 TRUE FALSE FALSE 127550.073 114207.248 146528.955 127979.0432 116291.3725 85711.43898 73347.60695 67743.20027 110252.2345 111819.5062 1.1406782 1.021353536 1.310406028 1.144514473 1.039991827 0.766515985 0.655946439 0.605826323 0.985983915 1 16.77081235 -6.131722828 3.018648883 0.767467854 1.152775064 0.598145279 0.135476479 0.171725104 2.989967166 0.047591378 0.047898468 7.38E-07 6.131722828 0.38530721 SSS(ph)GYFSFDTDR ddPTM_HeLa_A486_30min_R1 1 SSSGYFSFDTDR 12 0 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 0 S(0.039)S(0.039)S(0.923)GYFSFDTDR 79.089 0.0067717 60463000 127590 147190 118050 56361 149200 162740 155380 163770 163400 146870 TRUE FALSE FALSE 118646.5999 135526.1283 163762.1215 131211.2563 130485.9448 142662.7934 116502.2806 126483.1461 177563.6436 110092.796 1.077696308 1.231017226 1.48749171 1.19182418 1.185235996 1.295841313 1.058218928 1.148877589 1.612854337 1 16.74836054 SSS(ph)ISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR ddPTM_HeLa_A485_30min_R1 1 SSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 44 0 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 S(0.154)S(0.154)S(0.685)IS(0.006)GVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 295.24 3.16E-95 92204000 0 0 0 0 0 0 2182.8 0 1860.4 2303.4 TRUE FALSE FALSE 0 0 0 0 0 0 1716.426948 0 2233.765215 1729.204771 0 0 0 0 0 0 0.992610579 0 1.291787562 1 10.75589301 -7.244510287 0.830617244 1.048394148 2.24E-32 0.597791965 0.321837191 0.429999977 0.546008151 0.274250618 0.121502221 5.69E-08 7.244510287 -1.048394148 SSS(ph)ISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR ddPTM_HeLa_A486_30min_R1 1 SSSISGVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 44 0 A0A2R8Y7M0;P82094;P82094-2 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 S(0.179)S(0.179)S(0.585)IS(0.056)GVDMAGLQTSFLSQDESHDHSFGPMPISANGSNLYDAVR 106.06 6.92E-07 72197000 2196 3317.7 3450.3 0 3789.6 2506.5 4177.3 4377.7 3144.1 2632.6 TRUE FALSE FALSE 2042.07174 3054.793369 4786.348562 0 3314.273031 2197.273514 3132.095357 3380.993275 3416.63312 1973.379825 1.034809272 1.54800071 2.425457331 0 1.679490684 1.113456967 1.587173092 1.713300821 1.731361128 1 10.94645295 -6.797091713 24.28611392 1.567400891 1.320754124 0.023320788 0.603351865 561.0876519 382202.5602 0.24968777 0.168348079 1.60E-07 6.797091713 -0.246646766 SSS(ph)KDSRPSQAAGDNQGDEAK ddPTM_HeLa_A485_30min_R1 2 SSSKDSRPSQAAGDNQGDEAK 21 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.188)S(0.188)S(0.623)KDS(0.001)RPSQAAGDNQGDEAK;S(0.028)S(0.028)S(0.944)KDSRPSQAAGDNQGDEAK ; 318.41 1.62E-102 1611960000 594950 356020 221006 1358270 509560 510240 1013090 746000 360680 1636840 TRUE FALSE FALSE 727294.5749 397653.442 302765.3162 1432468.851 458826.4172 536955.3774 796635.0453 563042.3303 433065.1676 1228805.912 0.591870993 0.323609643 0.24638986 1.165740527 0.373392098 0.436973303 0.648300141 0.458202817 0.35242764 1 20.22882563 -10.68958585 2.739312786 1.06865842 0.513039101 0.260428615 0.247306463 44506649.39 38668408.55 21190784.14 0.061805563 2.04E-11 10.68958585 -0.555619319 SSS(ph)KDSRPSQAAGDNQGDEAK ddPTM_HeLa_A486_30min_R1 4 SSSKDSRPSQAAGDNQGDEAK 21 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.145)S(0.145)S(0.708)KDS(0.003)RPSQAAGDNQGDEAK;S(0.143)S(0.143)S(0.708)KDS(0.006)RPSQAAGDNQGDEAK;S(0.138)S(0.138)S(0.708)KDS(0.016)RPSQAAGDNQGDEAK;S(0.215)S(0.215)S(0.387)KDS(0.151)RPS(0.032)QAAGDNQGDEAK ;;; 326.81 1.82E-114 4075684000 1506682 1311696 395305 1335316 970074 1975602 2716694 2196497 936668 3509910 TRUE FALSE FALSE 1401071.372 1207752.432 548377.6826 3108683.131 848398.2733 1731872.312 2036948.427 1696402.582 1017859.136 2631005.69 0.532523125 0.459045922 0.208428923 1.181556977 0.322461588 0.658254871 0.774209054 0.644773437 0.386870747 1 21.32718294 -14 0.207175423 2.883623019 0.522692509 0.185192718 0.260264007 254.7359266 2.534990642 200.6882083 0.567121286 1.00E-14 14 -2.36093051 SSS(ph)KESLVR ddPTM_HeLa_A485_30min_R1 4 SSSKESLVR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 S(0.063)S(0.298)S(0.639)KES(0.001)LVR;S(0.154)S(0.252)S(0.593)KES(0.001)LVR;S(0.001)S(0.029)S(0.97)KESLVR;S(0.002)S(0.012)S(0.986)KESLVR ;;; 146.36 4.55E-05 2653420000 2840540 2503560 1753070 5010730 4117700 3062070 5441830 5335970 2594310 6373040 TRUE FALSE FALSE 3472408.323 2796329.564 2401603.544 5284453.492 3707727.33 3222395.25 4279138.565 4027314.991 3114964.221 4784358.415 0.725783485 0.584473261 0.501969822 1.104527093 0.774968555 0.673527142 0.894401755 0.841766992 0.651072506 1 22.18989404 -1.995912606 0.083569899 1.110540606 3.93E-18 0.194370987 0.159769705 261.3220652 1.94293116 4.453441345 33.89739451 0.01009456 1.995912606 -1.110540606 SSS(ph)KESLVR ddPTM_HeLa_A486_30min_R1 5 SSSKESLVR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 S(0.007)S(0.258)S(0.735)KESLVR;S(0.005)S(0.126)S(0.869)KESLVR;SS(0.007)S(0.993)KESLVR;S(0.002)S(0.012)S(0.986)KESLVR;S(0.029)S(0.286)S(0.684)KESLVR ;;;; 138.45 7.52E-05 6186140000 6087300 5477580 2623290 3849350 5581000 7106400 9402260 9115640 4209370 10441830 TRUE FALSE FALSE 5660611.705 5043516.612 3639098.142 8961481.335 4880978.939 6229684.621 7049715.101 7040207.765 4574241.581 7827127.803 0.7232042 0.644363646 0.464934039 1.144925899 0.623597706 0.795909403 0.900677142 0.899462477 0.5844087 1 22.90005157 -1.864547762 0.081877437 1.114981702 5.21E-16 0.144608441 0.183636057 312.4876351 2.216161702 5.189629752 39.8851969 0.013660048 1.864547762 -1.114981702 SSS(ph)LDALGPTR ddPTM_HeLa_A485_30min_R1 4 SSSLDALGPTR 11 0 Q9H425;Q9H425-2;Q9H425-3;E5RI90 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 SSS(1)LDALGPTR;S(0.003)S(0.007)S(0.99)LDALGPTR;SS(0.009)S(0.991)LDALGPTR;SS(0.009)S(0.99)LDALGPTR ;;; 241.78 7.47E-22 1070610000 1121470 1211290 1150000 1256320 1818170 1268630 1786380 2048600 1403500 1846220 TRUE FALSE FALSE 1370937.132 1352939.829 1575432.855 1324949.58 1637146.611 1335053.505 1404705.32 1546177.638 1685169.576 1385991.331 0.989138317 0.976153168 1.136683051 0.955958057 1.181209849 0.963248092 1.013502241 1.115575259 1.21585867 1 20.4024868 -7.304658906 7.225409769 1.125006817 1.033133062 0.147815899 0.085446187 0.435340574 61.64495989 0.044579083 0.021446857 4.96E-08 7.304658906 -0.091873755 SSS(ph)LDALGPTR ddPTM_HeLa_A486_30min_R1 4 SSSLDALGPTR 11 0 Q9H425;Q9H425-2;Q9H425-3;E5RI90 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 S(0.001)S(0.023)S(0.977)LDALGPTR;S(0.059)S(0.04)S(0.901)LDALGPTR;SSS(1)LDALGPTR;SS(0.007)S(0.993)LDALGPTR ;;; 195.09 6.90E-15 1201480000 1311210 1492300 1108890 530671 1710700 1716200 1912090 2017900 1373240 1644750 TRUE FALSE FALSE 1219300.95 1374044.713 1538281.905 1235428.907 1496128.054 1504472.693 1433664.858 1558468.22 1492273.549 1232893.894 0.988974765 1.114487402 1.247700157 1.002056148 1.213509176 1.220277511 1.16284529 1.264073273 1.210382788 1 20.23361721 -5.806891252 24.99988869 1.193023082 1.101559631 0.165168606 0.094223731 217.8932413 119846.6157 0.028323079 0.032115481 1.56E-06 5.806891252 -0.091463451 SSS(ph)LDALGPTRK ddPTM_HeLa_A485_30min_R1 1 SSSLDALGPTRK 12 1 Q9H425;Q9H425-2;Q9H425-3;E5RI90 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 S(0.224)S(0.224)S(0.552)LDALGPTRK 65.956 0.01001 141170000 345250 379650 239350 485710 408330 411610 494450 605120 324890 656790 TRUE FALSE FALSE 422049.6714 424046.765 327895.5252 512243.1074 367675.2315 433161.2631 388806.7182 456713.3712 390092.4429 493064.3403 0.855972815 0.860023186 0.665015695 1.038897088 0.745694226 0.8785086 0.788551689 0.926275404 0.791159309 1 18.91141639 -14 0.359091164 2.961470406 0.835260115 0.196884481 0.096949775 763.7673825 6.119776676 1157.293523 0.067055258 1.00E-14 14 -2.126210291 SSS(ph)LDGEHHDGYHR ddPTM_HeLa_A485_30min_R1 2 SSSLDGEHHDGYHR 14 0 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 S(0.301)S(0.301)S(0.398)LDGEHHDGYHR;S(0.305)S(0.305)S(0.39)LDGEHHDGYHR ; 94.007 0.00075811 2401160000 361786 509838 438875 409171 470162 377966 488093 540395 396059 507248 TRUE FALSE FALSE 442264.0476 569459.1191 601233.1256 431522.9757 423351.0204 397755.7153 383807.9432 407862.2789 475544.4084 380800.4088 1.161406441 1.495426754 1.578866807 1.133199875 1.111739932 1.044525442 1.007897928 1.071065759 1.248802253 1 18.5386755 -5.388930257 5.8718705 1.08269855 1.418597191 0.611662476 0.118643745 0.150518578 6.549853895 0.034055688 0.050821625 4.08E-06 5.388930257 0.335898641 SSS(ph)LDMNR ddPTM_HeLa_A485_30min_R1 6 SSSLDMNR 8 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 SSS(1)LDMNR;S(0.001)S(0.046)S(0.953)LDMNR;S(0.139)S(0.139)S(0.721)LDMNR;S(0.004)S(0.155)S(0.841)LDMNR;S(0.001)S(0.025)S(0.975)LDMNR;S(0.03)S(0.08)S(0.889)LDMNR ;;;;; 170.85 2.28E-05 8763040000 9196230 11161240 10322580 9678750 14646150 10720800 13506250 14911970 10344500 13081850 TRUE FALSE FALSE 11241899.64 12466449.93 14141331.9 10207475.6 13187927.88 11282124.51 10620529.35 11254785.98 12420546.26 9820785.549 1.144704727 1.269394374 1.439938977 1.039374656 1.342858758 1.148800618 1.081433792 1.146016876 1.264720241 1 23.227407 -6.454808367 11.4723697 1.132346267 1.247529684 0.204809894 0.117603587 1.63237474 272.3400999 0.040518258 0.035711097 3.51E-07 6.454808367 0.115183417 SSS(ph)LDMNR ddPTM_HeLa_A486_30min_R1 5 SSSLDMNR 8 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 SS(0.01)S(0.99)LDMNR;S(0.001)S(0.007)S(0.992)LDMNR;S(0.001)S(0.037)S(0.963)LDMNR;S(0.011)S(0.196)S(0.793)LDMNR;SS(0.007)S(0.993)LDMNR ;;;; 170.47 2.35E-05 9061220000 12316800 14357700 11952450 4632570 16863880 13106270 15451950 15535850 12242190 13920760 TRUE FALSE FALSE 11453455.92 13219943.56 16580758.74 10784857.08 14748654.92 11489351.66 11585708.68 11998676.1 13303352.89 10434911.09 1.097609345 1.266895659 1.588969815 1.033536078 1.413395361 1.101049311 1.110283411 1.149858969 1.274888955 1 23.31491497 -6.288960433 24.60673515 1.135524004 1.282812267 0.190077008 0.15725677 1103.690897 986812.5347 0.054356132 0.047950423 5.14E-07 6.288960433 0.147288262 SSS(ph)LEGFHNHFK ddPTM_HeLa_A486_30min_R1 1 SSSLEGFHNHFK 12 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 S(0.288)S(0.288)S(0.424)LEGFHNHFK 146.77 1.18E-07 64748000 43864 51988 27593 8371.4 44863 49942 62584 62659 44022 50463 TRUE FALSE FALSE 40789.36011 47868.28154 38277.74857 19489.04227 39235.86421 43780.66381 46924.82125 48392.91354 47837.8624 37826.73634 1.078320893 1.26546158 1.011923107 0.515218709 1.037252166 1.157399978 1.240519955 1.279330924 1.26465741 1 15.20711869 -6.270319255 3.754783989 1.213780625 0.97052222 0.2273626 0.190881505 0.356948492 11.32408921 0.074497499 0.069006204 5.37E-07 6.270319255 -0.243258405 SSS(ph)LESLQTAVAEVR ddPTM_HeLa_A486_30min_R1 1 SSSLESLQTAVAEVR 15 0 A0A087X1S9;Q8TEW8-2;Q8TEW8;R4GN62;A0A087WZG6;Q8TEW8-5 A0A087X1S9 PARD3B Partitioning defective 3 homolog B 1 0 SSS(1)LESLQTAVAEVR 254.68 3.29E-50 123080000 129380 149690 112450 56724 166040 157440 174620 157080 119370 128400 TRUE FALSE FALSE 120311.1301 137828.0192 155993.6515 132056.3387 145213.7149 138016.6535 130928.2291 121316.313 129717.0877 96247.80426 1.250014284 1.432012089 1.620750237 1.372045209 1.50874834 1.433971971 1.360324322 1.260457981 1.347740748 1 16.55446601 -8.351052651 0.587552204 0.992170883 1.447985286 0.630471474 0.096624819 0.883719569 0.606970909 0.11838769 0.043769937 4.46E-09 8.351052651 0.455814402 SSS(ph)LESLQTAVAEVTLNGDIPFHRPRPR ddPTM_HeLa_A486_30min_R1 1 SSSLESLQTAVAEVTLNGDIPFHRPRPR 28 2 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10;F5GZI3 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 S(0.102)S(0.102)S(0.796)LESLQTAVAEVTLNGDIPFHRPRPR 216.52 1.56E-38 273180000 35776 31862 27455 18332 38997 38201 45444 33817 29712 43594 TRUE FALSE FALSE 33268.28715 29337.13908 38086.31127 42677.82245 34105.63263 33488.14902 34073.43054 26117.60732 32287.46008 32677.77865 1.018070644 0.897770298 1.165511024 1.306019693 1.043694952 1.024798821 1.042709509 0.799246717 0.988055535 1 14.9960223 -7.067624124 7.76204905 0.919492699 1.077178667 0.25568948 0.111969395 0.436384912 45.1834646 0.056990587 0.032923108 8.56E-08 7.067624124 0.157685968 SSS(ph)LGNLK ddPTM_HeLa_A485_30min_R1 2 SSSLGNLK 8 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 SS(0.008)S(0.991)LGNLK;SS(0.001)S(0.999)LGNLK ; 111.27 0.0011703 687030000 2276300 1802590 1456510 3076000 2227100 1899160 2680200 2321900 1565500 3465500 TRUE FALSE FALSE 2782655.082 2013387.22 1995333.659 3244034.091 2005362.104 1998597.081 2107553.375 1752450.384 1879681.49 2601614.628 1.069587729 0.7738991 0.766959733 1.246931062 0.770814433 0.768214116 0.810094375 0.673601065 0.722505736 1 21.31097584 -5.907190556 20.32973927 0.774174248 0.945676871 0.229057216 0.152543088 6.789695246 1479.038916 0.047042342 0.053341173 1.24E-06 5.907190556 0.171502623 SSS(ph)LGNLK ddPTM_HeLa_A486_30min_R1 4 SSSLGNLK 8 0 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.009)S(0.097)S(0.894)LGNLK;SS(0.002)S(0.998)LGNLK;S(0.002)S(0.017)S(0.981)LGNLK;S(0.001)S(0.028)S(0.971)LGNLK ;;; 108.4 0.0012999 1340280000 4067830 4871050 2519950 1665160 4074580 4939260 5197850 4958680 3966600 5071890 TRUE FALSE FALSE 3782696.123 4485050.258 3495742.127 3876576.633 3563508.182 4329904.32 3897292.953 3829696.811 4310428.082 3801855.732 0.994960459 1.179700277 0.919483109 1.019653797 0.937307577 1.138892327 1.025102799 1.007323024 1.133769503 1 21.85827236 -6.259981444 24.99715676 1.059230545 1.015119607 0.092457583 0.078730051 410.9743033 7046460.444 0.026507793 0.025156862 5.50E-07 6.259981444 -0.044110938 SSS(ph)LGNLKK ddPTM_HeLa_A485_30min_R1 4 SSSLGNLKK 9 1 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.001)S(0.004)S(0.996)LGNLKK;SS(0.017)S(0.983)LGNLKK;SS(0.035)S(0.965)LGNLKK;S(0.043)S(0.016)S(0.941)LGNLKK ;;; 149.41 4.45E-05 9366790000 3119930 2666850 1658350 3963180 3143010 2994220 4688610 4633300 1928600 4482670 TRUE FALSE FALSE 3813947.665 2978714.909 2271842.675 4179678.488 2830080.889 3150992.729 3686850.171 3496975.91 2315652.33 3365222.866 1.133341777 0.885146401 0.67509427 1.242021303 0.840978741 0.936339985 1.09557385 1.039151358 0.688112622 1 21.68227062 -4.250966476 23.37891976 0.938637974 1.133342049 0.114780072 0.165879701 1404.694511 3135577.053 0.040351905 0.523508791 5.61E-05 4.250966476 0.194704076 SSS(ph)LGNLKK ddPTM_HeLa_A486_30min_R1 4 SSSLGNLKK 9 1 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 SS(0.009)S(0.991)LGNLKK;S(0.031)S(0.04)S(0.929)LGNLKK;S(0.013)S(0.087)S(0.9)LGNLKK;S(0.005)S(0.03)S(0.965)LGNLKK ;;; 142.97 6.67E-05 9110484000 2895230 2746020 1178990 1298427 2405080 2712180 3520600 3253330 1876040 3247730 TRUE FALSE FALSE 2692289.328 2528415.374 1635526.502 3022803.675 2103412.44 2377578.807 2639708.643 2512617.779 2038656.658 2434477.269 1.105900376 1.038586561 0.67181835 1.241664366 0.864009891 0.976628058 1.084302029 1.032097449 0.83741043 1 21.2151806 -5.291830903 24.99920969 1.002723855 0.948749799 0.038723161 0.148770594 3221.54926 2649948.844 0.041331802 0.061312762 5.11E-06 5.291830903 -0.053974056 SSS(ph)LGSNR ddPTM_HeLa_A486_30min_R1 1 SSSLGSNR 8 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.001)S(0.041)S(0.958)LGSNR 112.71 0.0011049 451240000 1281700 1195200 1549800 813780 1743900 1826400 1845800 1878400 1901000 2111100 TRUE FALSE FALSE 1191859.449 1100487.999 2149924.065 1894520.966 1525163.801 1601077.337 1383961.317 1450729.325 2065780.211 1582466.819 0.753165523 0.695425639 1.358590297 1.197194749 0.963788803 1.011760448 0.874559454 0.916751813 1.30541771 1 20.59374382 -4.725839826 24.99835295 1.066008865 0.724294794 0.455498729 0.154426977 170.4957234 119721.4795 0.041395062 0.109512284 1.88E-05 4.725839826 -0.34171407 SSS(ph)LIQLTSQNSSPNQQR ddPTM_HeLa_A485_30min_R1 2 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 SSS(1)LIQLTSQNSSPNQQR;S(0.033)S(0.033)S(0.933)LIQLTSQNSSPNQQR ; 386.84 2.56E-145 374310000 153064 194729 162991 183180 253272 190988 237179 256141 186499 216954 TRUE FALSE FALSE 187112.5587 217500.8626 223288.1535 193186.6596 228055.3504 200987.8364 186503.7691 193322.0181 223927.6386 162871.3605 1.148836469 1.335415029 1.370947923 1.186130323 1.40021763 1.234028105 1.145098613 1.1869614 1.374874244 1 17.31337342 -6.516993847 24.31463911 1.19192076 1.292569058 0.176925146 0.111390289 356.0112536 1470950.095 0.039994554 0.032053304 3.04E-07 6.516993847 0.100648299 SSS(ph)LIQLTSQNSSPNQQR ddPTM_HeLa_A486_30min_R1 2 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 SS(0.036)S(0.964)LIQLTSQNSSPNQQR;SS(0.003)S(0.997)LIQLTSQNSSPNQQR ; 324.39 5.35E-90 406200000 215712 257500 215501 86054 326900 281590 310620 364020 264180 319830 TRUE FALSE FALSE 200591.7027 237094.7622 298948.7585 200338.0609 285897.1538 246850.2888 232899.5906 281140.5925 287079.3351 239742.4863 0.836696515 0.988955966 1.24695778 0.835638539 1.192517681 1.029647655 0.971457309 1.172677388 1.197448728 1 17.87112608 -4.404807245 3.955786655 1.078532252 0.84217519 0.276645075 0.120301763 0.296370863 7.37022503 0.029302073 0.144769798 3.94E-05 4.404807245 -0.236357062 SSS(ph)LPK ddPTM_HeLa_A485_30min_R1 1 SSSLPK 6 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 S(0.024)S(0.252)S(0.724)LPK 91.9 0.015125 244340000 772380 730870 537930 1248000 986960 891490 1418200 1384700 730660 1585300 TRUE FALSE FALSE 944193.2663 816338.8888 736932.6921 1316175.08 888694.797 938167.0379 1115189.984 1045100.154 877296.76 1190113.885 0.793363793 0.685933421 0.61921191 1.10592364 0.746730887 0.78830022 0.937044764 0.878151383 0.737153621 1 20.1826682 -1 0.068773722 1.144339323 0.091572633 0.183741105 0.128606211 460.6807338 2.348325857 6.395478382 47.12164267 0.1 1 -1.05276669 SSS(ph)LVDIR ddPTM_HeLa_A485_30min_R1 1 SSSLVDIR 8 0 Q96Q42;Q96Q42-3 Q96Q42 ALS2 Alsin 1 0 S(0.236)S(0.164)S(0.6)LVDIR 92.538 0.0035232 73589000 252050 339610 265870 232690 222700 266110 274490 275920 198960 281870 TRUE FALSE FALSE 308117.6529 379324.4353 364226.3768 245401.2655 200527.2061 280043.1081 215842.9691 208250.1874 238889.447 211604.9964 1.456098193 1.792606232 1.721256033 1.159713946 0.94764873 1.323423893 1.020027753 0.984145889 1.128940484 1 17.69101417 -5.31288004 4.959116848 1.076911331 1.671458891 0.809678268 0.128273851 0.079986924 4.422728108 0.035838798 0.055143971 4.87E-06 5.31288004 0.594547559 SSS(ph)MAAGLER ddPTM_HeLa_A485_30min_R1 5 SSSMAAGLER 10 0 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L0Y9;I3L3C6 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 SS(0.002)S(0.998)MAAGLER;S(0.007)S(0.093)S(0.9)MAAGLER;SS(0.001)S(0.999)MAAGLER;SS(0.005)S(0.995)MAAGLER;SS(0.006)S(0.993)MAAGLER ;;;; 184.36 1.22E-09 6647800000 5985690 5672090 4766800 6546750 7302730 6448830 10669600 10568300 4792340 9652900 TRUE FALSE FALSE 7317186.09 6335391.585 6530237.683 6904382.375 6575644.56 6786480.767 8389952.797 7976407.855 5754118.68 7246609.678 1.009739232 0.874255944 0.901143841 0.95277415 0.907409789 0.936504251 1.15777628 1.100708912 0.794042861 1 22.78887476 -6.558980283 24.99487463 1.025183894 0.925402688 0.151656649 0.09419939 287.0590707 198742.9115 0.035829048 0.027753134 2.76E-07 6.558980283 -0.099781206 SSS(ph)MAAGLER ddPTM_HeLa_A486_30min_R1 6 SSSMAAGLER 10 0 B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-2;Q9UQB8;Q9UQB8-6;I3L0Y9;I3L3C6 B4DWA1 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 S(0.018)S(0.22)S(0.762)MAAGLER;S(0.002)S(0.023)S(0.976)MAAGLER;SS(0.014)S(0.986)MAAGLER;SS(0.016)S(0.984)MAAGLER;S(0.017)S(0.169)S(0.814)MAAGLER;S(0.01)S(0.057)S(0.933)MAAGLER ;;;;; 199.82 9.79E-14 7445150000 5369380 6114850 5334190 7000010 6915130 6404400 9808870 8852420 4809490 12833220 TRUE FALSE FALSE 4993014.19 5630287.016 7399731.223 16296377.04 6047769.914 5614290.243 7354586.978 6836917.213 5226380.466 9619698.182 0.519040628 0.585287283 0.769226964 1.694063237 0.628686036 0.583624365 0.764534067 0.710720553 0.543299838 1 23.1975602 SSS(ph)MSSIDLVSASDDVHR ddPTM_HeLa_A485_30min_R1 1 SSSMSSIDLVSASDDVHR 18 0 A0A2R8YFA1;A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3;A0A0A0MRE4 A0A2R8YFA1 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 S(0.135)S(0.135)S(0.729)MS(0.002)SIDLVSASDDVHR 210.98 7.65E-26 341430000 98999 144880 161010 140930 186180 140480 194920 214350 118700 166430 TRUE FALSE FALSE 121020.986 161822.4557 220574.2992 148628.649 167643.2655 147835.3156 153273.7497 161780.3264 142522.0012 124942.0639 0.968616831 1.295179947 1.765412642 1.189580549 1.341768018 1.183230939 1.226758586 1.294842756 1.140704713 1 16.93089974 -8.14004786 0.543683837 0.992782587 1.32212267 0.179673475 0.189879915 1.961238825 1.331634141 0.228978921 0.098501117 7.24E-09 8.14004786 0.329340083 SSS(ph)MSSIDLVSASDDVHR ddPTM_HeLa_A486_30min_R1 1 SSSMSSIDLVSASDDVHR 18 0 A0A2R8YFA1;A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3;A0A0A0MRE4 A0A2R8YFA1 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 S(0.056)S(0.155)S(0.784)MS(0.004)SIDLVSASDDVHR 214.42 1.75E-26 440520000 167500 185930 214090 45508 262240 211280 250490 273840 234560 201200 TRUE FALSE FALSE 155759.115 171196.2297 296991.3815 105944.9238 229347.4139 185214.4217 187814.7526 211492.6099 254891.8497 150818.2104 1.032760663 1.135116437 1.969201071 0.702467716 1.520687809 1.228064046 1.245305538 1.402301548 1.690060166 1 17.20245111 -7.272526224 19.32626063 1.409636244 1.271397964 0.012441007 0.346024352 158.6770702 276569.5888 0.177379932 0.087332522 5.34E-08 7.272526224 -0.13823828 SSS(ph)MSSLTGAYTSGIPSSSR ddPTM_HeLa_A485_30min_R1 3 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 0 S(0.001)S(0.039)S(0.956)MS(0.003)SLTGAYTSGIPSSSR;S(0.081)S(0.081)S(0.838)MSSLTGAYTSGIPSSSR;SS(0.02)S(0.98)MSSLTGAYTSGIPSSSR ;; 250.95 4.51E-47 193712000 172606 202089 170861 171028 216639 198218 216360 255985 179189 280349 TRUE FALSE FALSE 211001.6092 225721.5506 234069.594 180370.8266 195069.6605 208596.388 170132.9185 193204.2774 215150.5887 210463.1537 1.002558431 1.072499136 1.112164243 0.857018549 0.926858963 0.991130202 0.808373891 0.917995734 1.022271998 1 17.68320815 -5.25639283 24.99794663 0.925637783 1.063416459 0.447155563 0.066211049 373.2055463 1848657.21 0.018168274 0.030255097 5.54E-06 5.25639283 0.137778676 SSS(ph)MSSLTGAYTSGIPSSSR ddPTM_HeLa_A486_30min_R1 1 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 0 S(0.004)S(0.173)S(0.808)MS(0.014)SLTGAYTSGIPSSSR 176.11 3.96E-14 99997000 108690 101140 79923 26315 112390 82463 100850 94728 93243 101580 TRUE FALSE FALSE 101071.3923 93125.29805 110871.326 61262.64989 98292.9982 72289.55348 75616.26332 73160.5023 101325.3783 76143.70683 1.327376831 1.223020285 1.456079966 0.804566161 1.29088801 0.949383166 0.993073052 0.960821391 1.330712445 1 16.21643718 -5.246284795 24.99967986 1.049270752 1.324245149 0.412242616 0.157636302 813.1346491 1341381.617 0.040653384 0.070062162 5.67E-06 5.246284795 0.274974397 SSS(ph)MSYVDGFIGTWPK ddPTM_HeLa_A485_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.084)S(0.084)S(0.832)MSYVDGFIGTWPK 230.16 2.58E-34 403320000 227910 254150 198980 264100 339720 260250 333350 362790 287160 428250 TRUE FALSE FALSE 278607.7932 283870.6317 272590.9822 278527.1143 305896.284 273876.2876 262127.0493 273815.1837 344790.378 321495.1564 0.866600282 0.882970166 0.847885192 0.866349333 0.951480226 0.851883091 0.815337476 0.851693029 1.072459013 1 18.29443748 -7.757173641 24.99998462 1.036229542 0.867283382 0.772671149 0.036764915 45.92937736 269188.3127 0.028026029 0.0097578 1.75E-08 7.757173641 -0.168946159 SSS(ph)MSYVDGFIGTWPK ddPTM_HeLa_A486_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.077)S(0.077)S(0.846)MSYVDGFIGTWPK 195.54 1.07E-18 516330000 609190 617890 438050 269680 620880 735950 774220 892280 564360 716460 TRUE FALSE FALSE 566488.9269 568926.1461 607674.6914 627828.6689 543003.4409 645155.9716 580501.9671 689127.3223 613279.1792 537053.7526 1.054808618 1.059346748 1.131496965 1.169023893 1.011078385 1.201287522 1.080901054 1.283162661 1.141932583 1 19.03470697 -6.281812392 24.9892137 1.155369694 1.090951734 0.094936203 0.080454647 1705.32215 2091713.23 0.027385336 0.024185583 5.23E-07 6.281812392 -0.064417959 SSS(ph)NVNGGPELDR ddPTM_HeLa_A486_30min_R1 1 SSSNVNGGPELDR 13 0 Q8N568-2;Q8N568;G5E9L9;Q8N568-3;A0A0U1RR70 Q8N568-2 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 S(0.003)S(0.128)S(0.869)NVNGGPELDR 145.52 9.09E-08 209440000 156210 174200 153610 70809 186370 165370 179490 186570 137360 168350 TRUE FALSE FALSE 145260.4857 160395.7576 213091.9058 164846.9305 162993.7368 144968.3308 134579.7035 144092.0838 149266.4754 126194.0642 1.1510881 1.271024581 1.688604826 1.306297024 1.291611755 1.148772976 1.066450347 1.14182933 1.182832777 1 16.94528453 -6.153287701 2.15936126 1.108453701 1.370577731 0.434516311 0.135321169 0.326226234 2.990544695 0.054004886 0.053444551 7.03E-07 6.153287701 0.26212403 SSS(ph)PAGETEGDREPQAR ddPTM_HeLa_A485_30min_R1 1 SSSPAGETEGDREPQAR 17 1 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 SS(0.019)S(0.98)PAGETEGDREPQAR 242.16 9.76E-43 1061100000 247040 262180 308150 358080 330750 228590 292880 181780 271180 426040 TRUE FALSE FALSE 301993.1957 292839.6703 422147.5082 377641.0037 297819.3687 240558.6189 230303.7954 137198.17 325603.3386 319836.0687 0.944212443 0.915593015 1.319887122 1.180733009 0.931162548 0.75213099 0.720068241 0.428964033 1.018031956 1 18.28697312 -6.062850314 3.224625485 0.744694771 1.092770519 0.359181742 0.188399153 0.255332631 5.231311145 0.065482263 0.068221515 8.65E-07 6.062850314 0.348075748 SSS(ph)PAGETEGDREPQAR ddPTM_HeLa_A486_30min_R1 2 SSSPAGETEGDREPQAR 17 1 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.107)S(0.412)S(0.481)PAGETEGDREPQAR;SS(0.002)S(0.998)PAGETEGDREPQAR ; 251.41 9.91E-44 3083700000 1461390 1224950 594530 189720 806620 1201770 1049890 966610 1047780 1295790 TRUE FALSE FALSE 1358954.108 1127880.501 824747.9381 441677.7479 705446.1982 1053507.836 787196.4174 746534.0039 1138602.414 971315.7498 1.399085836 1.161188317 0.849103845 0.454721081 0.726278966 1.084619328 0.810443378 0.768580149 1.172226863 1 19.88958083 -4.591325621 3.011965238 0.83685844 1.371854695 0.456165905 0.191405616 0.230040007 3.986583732 0.052806377 0.203372653 2.56E-05 4.591325621 0.534996256 SSS(ph)PAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_A485_30min_R1 5 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.038)S(0.182)S(0.779)PAGETEGDREPQARPGEGTAPLPPPGQK;S(0.04)S(0.141)S(0.819)PAGETEGDREPQARPGEGTAPLPPPGQK;S(0.116)S(0.116)S(0.768)PAGETEGDREPQARPGEGTAPLPPPGQK;S(0.006)S(0.029)S(0.964)PAGET(0.001)EGDREPQARPGEGTAPLPPPGQK;S(0.032)S(0.032)S(0.935)PAGET(0.002)EGDREPQARPGEGTAPLPPPGQK ;;;; 219.76 3.63E-39 11880970000 1199532 1394078 1079616 1461207 1794936 1585916 2063044 2131936 1274438 2019614 TRUE FALSE FALSE 1466363.755 1557103.295 1479010.885 1541029.038 1616225.869 1668952.109 1622257.796 1609075.353 1530206.017 1516161.398 0.967155447 1.027003654 0.975496993 1.016401711 1.065998562 1.100774701 1.069976981 1.061282364 1.009263274 1 20.53199191 -5.602312345 4.15661296 1.057489184 0.99373697 0.426591288 0.031515279 0.196857343 6.512968115 0.009512606 0.012603497 2.50E-06 5.602312345 -0.063752214 SSS(ph)PAGETEGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_A486_30min_R1 3 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.181)S(0.115)S(0.686)PAGET(0.018)EGDREPQARPGEGTAPLPPPGQK;S(0.054)S(0.054)S(0.496)PAGET(0.397)EGDREPQARPGEGTAPLPPPGQK;S(0.143)S(0.143)S(0.714)PAGETEGDREPQARPGEGTAPLPPPGQK ;; 228.49 2.21E-39 3106910000 607192 528669 345663 194382 535505 534405 645928 652153 472127 624136 TRUE FALSE FALSE 564630.9763 486775.3431 479512.9708 452531.1195 468336.9695 468475.5445 484309.9825 503671.9983 513051.3485 467848.2832 1.206867689 1.040455551 1.024932629 0.967260404 1.00104454 1.001340737 1.035185978 1.076571223 1.096619069 1 18.83568123 -4.258658504 3.924434812 1.024954541 1.224488831 0.692887766 0.036038019 0.154884897 4.862558602 0.010167439 0.088973121 5.51E-05 4.258658504 0.19953429 SSS(ph)PAPADIAQTVQEDLR ddPTM_HeLa_A485_30min_R1 14 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 SS(0.003)S(0.997)PAPADIAQTVQEDLR;SSS(0.999)PAPADIAQTVQEDLR;SS(0.004)S(0.996)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;SS(0.001)S(0.999)PAPADIAQTVQEDLR;S(0.1)S(0.1)S(0.8)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;S(0.088)S(0.088)S(0.824)PAPADIAQTVQEDLR;SS(0.005)S(0.995)PAPADIAQTVQEDLR;SS(0.002)S(0.998)PAPADIAQTVQEDLR;SS(0.002)S(0.998)PAPADIAQTVQEDLR;S(0.008)S(0.062)S(0.93)PAPADIAQTVQEDLR;SS(0.004)S(0.996)PAPADIAQTVQEDLR;S(0.001)S(0.022)S(0.977)PAPADIAQTVQEDLR ;;;;;;;;;;;;; 435.06 5.83E-183 6.37E+11 31721142 38479756 37059170 31535435 54916673 37311976 47010242 48843465 36976250 46200937 TRUE FALSE FALSE 38777400.6 42979628.73 50768899.14 33258135.96 49448976.21 39265573.37 36966119.76 36864528.63 44397044.21 34683893.67 1.118023281 1.239181193 1.463760085 0.958892801 1.425704296 1.132098193 1.065800746 1.062871688 1.28004787 1 25.04776253 -6.497545786 24.75544674 1.106209357 1.241816083 0.167115519 0.149486609 1216.529372 1188798.518 0.050673179 0.044499 3.18E-07 6.497545786 0.135606726 SSS(ph)PAPADIAQTVQEDLR ddPTM_HeLa_A486_30min_R1 13 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 SSS(1)PAPADIAQTVQEDLR;SS(0.035)S(0.965)PAPADIAQTVQEDLR;S(0.08)S(0.08)S(0.84)PAPADIAQTVQEDLR;SS(0.073)S(0.927)PAPADIAQTVQEDLR;S(0.004)S(0.013)S(0.983)PAPADIAQTVQEDLR;SS(0.005)S(0.995)PAPADIAQTVQEDLR;S(0.041)S(0.118)S(0.841)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;SS(0.003)S(0.997)PAPADIAQTVQEDLR;S(0.001)S(0.034)S(0.965)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;SSS(1)PAPADIAQTVQEDLR;S(0.021)S(0.082)S(0.896)PAPADIAQTVQEDLR ;;;;;;;;;;;; 472.81 6.55E-227 5.01E+11 18650396 21559167 17603939 6865825.6 26009258 21170685 21381296 22395602 16646445 20564690 TRUE FALSE FALSE 17343099.55 19850740.09 24420655.63 15983988.98 22746934.33 18558861.13 16031469.59 17296612.32 18089372.26 15415157.77 1.125067924 1.28774161 1.58419758 1.036900771 1.475621247 1.203935854 1.039980896 1.122052241 1.17347954 1 23.87784632 -6.526001918 9.015502559 1.097723707 1.305873325 0.312191161 0.151941897 0.142158268 148.7716364 0.055170231 0.044209029 2.98E-07 6.526001918 0.208149619 SSS(ph)PATEQSWMENDFDELR ddPTM_HeLa_A485_30min_R1 2 SSSPATEQSWMENDFDELR 19 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.112)S(0.112)S(0.777)PATEQSWMENDFDELR;S(0.111)S(0.111)S(0.777)PATEQSWMENDFDELR ; 300.87 3.02E-79 254637000 112439 176802 103331 85247 91113 111608 114475 116761 87651 111892 TRUE FALSE FALSE 137450.6676 197477.4559 141557.4369 89903.82775 82041.4698 117451.6223 90016.48108 88125.18168 105241.7517 83999.38362 1.636329479 2.350939345 1.685219948 1.070291517 0.976691331 1.398243859 1.071632638 1.049117004 1.25288719 1 16.35809112 -5.108013814 3.76612051 1.124395141 2.001025123 0.762625757 0.201831256 0.099441456 2.518659687 0.052925475 0.099744518 7.80E-06 5.108013814 0.876629982 SSS(ph)PATEQSWMENDFDELR ddPTM_HeLa_A486_30min_R1 1 SSSPATEQSWMENDFDELR 19 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.062)S(0.062)S(0.877)PATEQSWMENDFDELR 390.55 8.05E-146 150500000 98603 85096 60184 25728 67950 63693 71494 62407 66500 106050 TRUE FALSE FALSE 91691.43889 78352.68305 83488.85658 59896.08422 59427.07739 55835.20524 53605.44501 48198.28844 72264.27354 79494.38973 1.15343283 0.985637896 1.050248412 0.753463036 0.747563163 0.702379192 0.674329914 0.606310566 0.909048724 1 16.27856543 -5.261784174 5.707778449 0.745402004 1.057385206 0.570288166 0.11499268 0.104700421 13.90220821 0.030772079 0.049933835 5.47E-06 5.261784174 0.311983203 SSS(ph)PATEQSWMENDFDELREEGFR ddPTM_HeLa_A485_30min_R1 3 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.061)S(0.315)S(0.623)PATEQSWMENDFDELREEGFR;S(0.133)S(0.133)S(0.733)PATEQSWMENDFDELREEGFR;S(0.002)S(0.003)S(0.995)PATEQSWMENDFDELREEGFR ;; 273.02 3.52E-75 438506000 6082 5434.2 6612.2 8523.5 4302.6 5910.5 5046 4786.6 7040 8836.1 TRUE FALSE FALSE 7434.919917 6069.682419 9058.327937 8989.117222 3874.218037 6219.964641 3967.880878 3612.678845 8452.863425 6633.422886 1.120827067 0.915015147 1.36555864 1.355125005 0.584045085 0.937670453 0.598164921 0.544617599 1.274283815 1 12.69553779 -5.758035636 24.99998968 0.794839928 1.182153672 0.354317569 0.240159348 96.23396266 706818.3143 0.072088451 0.089281716 1.75E-06 5.758035636 0.387313744 SSS(ph)PATEQSWMENDFDELREEGFR ddPTM_HeLa_A486_30min_R1 3 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 SS(0.002)S(0.998)PATEQSWMENDFDELREEGFR;S(0.162)S(0.162)S(0.675)PATEQSWMENDFDELREEGFR;S(0.003)S(0.116)S(0.875)PAT(0.007)EQSWMENDFDELREEGFR ;; 282.28 1.54E-75 439730000 15656.9 17750.7 14345.6 7077.1 18608 19447.1 17910.1 18533.2 14712.2 15960.5 TRUE FALSE FALSE 14559.43216 16344.06989 19900.60051 16475.84646 16274.01113 17047.91453 13428.80355 14313.59494 15987.46534 11963.88691 1.216948327 1.366117049 1.663389219 1.377131577 1.360261196 1.424947816 1.122444874 1.196400053 1.336310302 1 13.54639856 -6.755050403 24.98368647 1.180155469 1.408785693 0.444786525 0.129420912 151.5983978 592817.9288 0.05141715 0.038844784 1.76E-07 6.755050403 0.228630224 SSS(ph)PATEQSWMENDFDELREEGFRR ddPTM_HeLa_A485_30min_R1 3 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.304)S(0.304)S(0.393)PATEQSWMENDFDELREEGFRR;S(0.304)S(0.304)S(0.391)PATEQSWMENDFDELREEGFRR;S(0.013)S(0.085)S(0.902)PATEQSWMENDFDELREEGFRR ;; 261.86 5.18E-62 1489140000 68655 79469 88234 70655 134574 103740 136641 120789 86763 116701 TRUE FALSE FALSE 83927.06789 88762.20826 120875.4283 74514.70374 121175.34 109171.666 107446.5341 91165.30836 104175.5383 87609.58842 0.957966695 1.013156321 1.379705469 0.850531375 1.383128745 1.246115499 1.226424368 1.040585968 1.189088319 1 16.41880115 -4.545976495 24.99277965 1.16954627 0.971763877 0.175042593 0.157035595 303.8639494 328793.2359 0.038001281 0.100554437 2.84E-05 4.545976495 -0.197782393 SSS(ph)PATEQSWMENDFDELREEGFRR ddPTM_HeLa_A486_30min_R1 3 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.294)S(0.294)S(0.411)PATEQSWMENDFDELREEGFRR;S(0.134)S(0.134)S(0.731)PATEQSWMENDFDELREEGFRR;S(0.102)S(0.102)S(0.797)PATEQSWMENDFDELREEGFRR ;; 226.33 1.14E-38 1100770000 64775 59002 58018 21889.6 86678 57905 74617 64381 45590.3 45994.8 TRUE FALSE FALSE 60234.607 54326.46664 80484.12338 50960.09504 75806.037 50761.26983 55947.03738 49722.85173 49542.10391 34477.4027 1.747074961 1.575712275 2.334402161 1.478072333 2.198716581 1.472305506 1.622716127 1.442186703 1.436944202 1 15.07336348 -7.691665222 0.582007571 1.010467713 1.859182284 0.490552439 0.262611277 0.639055129 0.515978058 0.254240237 0.125635711 2.03E-08 7.691665222 0.848714571 SSS(ph)PELVTHLK ddPTM_HeLa_A485_30min_R1 2 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.311)S(0.311)S(0.378)PELVTHLK;S(0.006)S(0.248)S(0.747)PELVTHLK ; 236.12 8.35E-22 4698470000 5625060 4869910 4428250 7243440 6908750 5190670 6932830 5737200 5711150 10081600 TRUE FALSE FALSE 6876335.191 5439403.612 6066443.95 7639130.786 6220890.592 5462445.455 5451574.234 4330142.704 6857325.419 7568442.658 0.908553516 0.718695227 0.801544548 1.009339851 0.821951209 0.72173969 0.720303302 0.572131269 0.906041801 1 22.85156504 -6.013106148 24.10084258 0.755376295 0.854120619 0.048286756 0.129089642 889.6029213 1635890.266 0.041107714 0.043025648 9.70E-07 6.013106148 0.098744324 SSS(ph)PELVTHLK ddPTM_HeLa_A486_30min_R1 2 SSSPELVTHLK 11 0 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.223)S(0.223)S(0.554)PELVTHLK;S(0.058)S(0.021)S(0.921)PELVTHLK ; 210.73 2.74E-15 4672530000 1871690 2104720 1212110 658240 1997650 2217970 2277990 2362340 1718070 2245090 TRUE FALSE FALSE 1740494.196 1937934.322 1681471.453 1532415.986 1747086.11 1944339.412 1708012.808 1824486.752 1866993.691 1682904.851 1.034220203 1.15154123 0.99914826 0.910577912 1.038137188 1.155347203 1.014919416 1.084129474 1.109387551 1 20.68252218 -6.017760505 24.85369166 1.076882457 1.024116717 0.1028771 0.068461462 1640.144965 2295185.851 0.023511584 0.024021473 9.60E-07 6.017760505 -0.05276574 SSS(ph)PELVTHLKWDDPYYDIAR ddPTM_HeLa_A485_30min_R1 1 SSSPELVTHLKWDDPYYDIAR 21 1 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.067)S(0.092)S(0.841)PELVTHLKWDDPYYDIAR 242.05 1.18E-46 358260000 145720 260460 160930 108940 252060 277810 371740 572040 179550 167210 TRUE FALSE FALSE 178134.9113 290918.5313 220464.7039 114891.1163 226964.0214 292355.702 292314.7122 431746.2931 215584.0381 125527.6243 1.419089322 2.317565819 1.756304281 0.9152656 1.808080275 2.329014858 2.328688317 3.439452436 1.717423072 1 16.93764536 -6.193330027 4.430089206 2.32732142 1.634450309 0.112349818 0.665229691 0.379360787 14.63550223 0.222835999 0.220238877 6.41E-07 6.193330027 -0.692871111 SSS(ph)PELVTHLKWDDPYYDIAR ddPTM_HeLa_A486_30min_R1 1 SSSPELVTHLKWDDPYYDIAR 21 1 Q07960;H0YE29;E9PNR6 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.118)S(0.118)S(0.765)PELVTHLKWDDPYYDIAR 258.05 4.52E-59 271870000 255140 170510 127710 90039 285820 164760 265470 267010 126600 273220 TRUE FALSE FALSE 237256.0035 156998.1666 177162.7322 209615.3423 249969.7904 144433.5864 199046.5981 206217.6518 137573.7899 204803.9336 1.158454329 0.766577887 0.865035788 1.023492755 1.220532174 0.705228575 0.97188855 1.006902788 0.671734119 1 17.6438839 -6.283676637 24.99112839 0.877878379 0.986521466 0.143252055 0.161717377 2098.723655 2358622.721 0.057731105 0.050950681 5.20E-07 6.283676637 0.108643087 SSS(ph)PGKLLGSGYGGLTGGSSR ddPTM_HeLa_A485_30min_R1 2 SSSPGKLLGSGYGGLTGGSSR 21 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.008)S(0.121)S(0.871)PGKLLGSGYGGLTGGSSR;S(0.001)S(0.025)S(0.974)PGKLLGSGYGGLTGGSSR ; 234.8 1.63E-46 5895600000 1188650 2017520 1077600 1087490 2674200 2497700 3720700 5513600 1296210 1872980 TRUE FALSE FALSE 1453061.092 2253451.414 1476249.083 1146896.825 2407947.258 2628475.71 2925742.05 4161380.955 1556347.457 1406080.556 1.033412407 1.602647448 1.049903632 0.815669359 1.712524399 1.869363529 2.080778401 2.959560843 1.106869341 1 20.42324782 -5.929117881 5.43875707 1.928554779 1.156750797 0.247108155 0.545169854 0.251764852 13.63549879 0.168077319 0.190779269 1.18E-06 5.929117881 -0.771803981 SSS(ph)PGKLLGSGYGGLTGGSSR ddPTM_HeLa_A486_30min_R1 2 SSSPGKLLGSGYGGLTGGSSR 21 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.003)S(0.017)S(0.98)PGKLLGSGYGGLTGGSSR;S(0.022)S(0.115)S(0.863)PGKLLGSGYGGLTGGSSR ; 275.43 6.85E-73 3407300000 2462700 1579070 1331000 1127370 2868700 1840400 3115800 3200300 1375970 3281400 TRUE FALSE FALSE 2290077.447 1453938.742 1846398.845 2624574.334 2508880.896 1613350.16 2336193.884 2471661.552 1495240.187 2459716.082 0.931033246 0.59110023 0.750655272 1.067023285 1.019988004 0.655909099 0.949781929 1.004856443 0.607891374 1 21.23006037 -5.044031148 24.66618004 0.898637139 0.738519368 0.135043601 0.164163541 675.1023802 378190.5231 0.043862902 0.07597887 9.04E-06 5.044031148 -0.160117771 SSS(ph)PGKPQAVSSLNSSHSR ddPTM_HeLa_A485_30min_R1 3 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.408)S(0.12)S(0.466)PGKPQAVS(0.002)S(0.003)LNSSHSR;SS(0.015)S(0.985)PGKPQAVSSLNSSHSR;S(0.003)S(0.028)S(0.969)PGKPQAVSSLNSSHSR ;; 200.1 8.49E-26 2638570000 836834 1172778 965114 480342 1622701 1017902 1517521 1493510 1013898 1121722 TRUE FALSE FALSE 1022984.836 1309924.185 1322149.83 506581.8672 1461139.191 1071197.775 1193290.241 1127224.331 1217378.029 842097.3492 1.21480591 1.555549589 1.570067679 0.601571621 1.735119095 1.272059312 1.417045479 1.338591473 1.445649995 1 19.6836275 -10.05026101 4.542595596 0.99998572 1.351217197 0.116373691 0.28935804 186983601.6 1.466269275 33312.92898 0.067239091 8.91E-11 10.05026101 0.351231478 SSS(ph)PGKPQAVSSLNSSHSR ddPTM_HeLa_A486_30min_R1 2 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.005)S(0.132)S(0.863)PGKPQAVSSLNSSHSR;S(0.001)S(0.039)S(0.96)PGKPQAVSSLNSSHSR ; 174.53 2.91E-13 1095020000 772020 699180 475862 15810.4 811490 582704 749760 707010 605901 342441 TRUE FALSE FALSE 717905.3847 643774.4304 660128.5104 36807.41021 709705.3574 510815.905 562162.1178 546039.2569 658420.9865 256691.5447 2.796762884 2.507968976 2.571679995 0.143391596 2.764817821 1.989998952 2.190029744 2.127219491 2.56502795 1 17.96967625 -10.07043041 9.229598394 0.999999997 2.154876435 0.190603844 0.729789492 4.48E-08 5.68E-09 0.704006801 0.17074673 8.50E-11 10.07043041 1.154876438 SSS(ph)PHDKNLPQK ddPTM_HeLa_A485_30min_R1 3 SSSPHDKNLPQK 12 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.017)S(0.017)S(0.966)PHDKNLPQK;SS(0.021)S(0.979)PHDKNLPQK;S(0.113)S(0.113)S(0.774)PHDKNLPQK ;; 190.41 1.58E-13 2320860000 2017880 2360850 1432120 1839180 3055580 3082450 4553900 6023700 2063540 3144040 TRUE FALSE FALSE 2466750.444 2636930.871 1961920.783 1939649.746 2751355.726 3243842.316 3580922.063 4546378.13 2477673.55 2360288.69 1.045105395 1.117206926 0.831220686 0.82178496 1.165686104 1.374341338 1.51715427 1.926195787 1.049733264 1 21.1705319 -6.128000842 2.75256973 1.445650175 0.958519583 0.352427477 0.258225011 0.269793797 3.962082383 0.091042017 0.091771869 7.45E-07 6.128000842 -0.487130592 SSS(ph)PHDKNLPQK ddPTM_HeLa_A486_30min_R1 3 SSSPHDKNLPQK 12 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.112)S(0.112)S(0.777)PHDKNLPQK;S(0.001)S(0.027)S(0.971)PHDKNLPQK;S(0.132)S(0.132)S(0.737)PHDKNLPQK ;; 178.22 2.31E-12 2041720000 3896870 2932410 1609090 618622 3828900 3236880 4652840 4460790 2318300 4132060 TRUE FALSE FALSE 3623719.536 2700035.152 2232172.741 1440183.279 3348643.659 2837546.656 3488650.219 3445165.495 2519252.111 3097365.281 1.169936126 0.871719964 0.720668226 0.464970434 1.081126491 0.916116247 1.126328316 1.112289053 0.813353248 1 21.5626101 SSS(ph)PNSPLPMFR ddPTM_HeLa_A486_30min_R1 1 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.122)S(0.122)S(0.755)PNSPLPMFR 57.55 0.035587 60667000 65115 75184 49642 28427 76839 63655 75523 79618 68177 69840 TRUE FALSE FALSE 60550.77475 69226.14602 68864.71186 66179.49262 67201.13612 55801.8933 56626.3466 61490.71945 74086.63725 52351.60942 1.156617255 1.322330809 1.315426835 1.264134825 1.28364986 1.065905975 1.08165436 1.174571711 1.415174014 1 15.67594627 -6.23348054 24.44823737 1.154259009 1.273798422 0.226902582 0.111073384 903.1727628 789767.629 0.037058304 0.037049724 5.84E-07 6.23348054 0.119539413 SSS(ph)PPILTKPTLK ddPTM_HeLa_A485_30min_R1 1 SSSPPILTKPTLK 13 1 A0A3B3ITI3;A0A3B3IS53;A0A3F2YNX6;Q92794 A0A3B3ITI3 KAT6A Histone acetyltransferase KAT6A 1 0 S(0.293)S(0.293)S(0.415)PPILTKPTLK 73.208 0.0044606 865870000 1032500 781970 611190 1300000 1142800 1017600 1336200 1227900 973880 1827800 TRUE FALSE FALSE 1262176.063 873414.5893 837294.6147 1371015.708 1029018.819 1070879.962 1050709.954 926755.5997 1169328.783 1372163.098 0.919844051 0.636523887 0.610200504 0.999163809 0.749924569 0.780431979 0.765732554 0.675397554 0.85217915 1 20.38802054 -8.011475317 19.99832759 1.000000008 0.765037693 0.286506974 0.113036113 49.67878376 86579.41245 0.108108369 0.027913459 9.74E-09 8.011475317 -0.234962315 SSS(ph)PPILTKPTLK ddPTM_HeLa_A486_30min_R1 1 SSSPPILTKPTLK 13 1 A0A3B3ITI3;A0A3B3IS53;A0A3F2YNX6;Q92794 A0A3B3ITI3 KAT6A Histone acetyltransferase KAT6A 1 0 S(0.02)S(0.125)S(0.855)PPILTKPTLK 76.82 0.0034622 692420000 742400 736750 339470 228640 640590 839780 876770 904330 646470 948690 TRUE FALSE FALSE 690361.5938 678367.2468 470921.8753 532285.4748 560241.2289 736176.4819 657392.8725 698433.8004 702506.5401 711131.8491 0.97079268 0.953926122 0.662214575 0.748504621 0.787816253 1.035217988 0.924431768 0.98214389 0.987871013 1 19.43975755 -6.256375345 24.97763077 0.980973103 0.818578222 0.452391203 0.088512658 441.4309529 2177298.407 0.032618408 0.031657587 5.54E-07 6.256375345 -0.162394882 SSS(ph)PPPR ddPTM_HeLa_A485_30min_R1 2 SSSPPPR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.028)S(0.066)S(0.905)PPPR;S(0.01)S(0.01)S(0.981)PPPR ; 98.457 0.0049027 208110000 488430 525100 254880 662020 259410 662700 411800 511660 474990 639140 TRUE FALSE FALSE 597079.5684 586505.8772 349170.7184 698184.4763 233582.2296 697397.9473 323815.5659 386174.5827 570316.1361 479814.1605 1.244397556 1.2223605 0.727720745 1.455114363 0.486818124 1.453475126 0.674877051 0.804841988 1.188618809 1 18.87211621 -4.605902038 14.19512332 0.97321103 1.238886418 0.104547614 0.304011204 1.860838272 311.9646555 0.071487282 0.189167683 2.48E-05 4.605902038 0.265675389 SSS(ph)PTQYGLTK ddPTM_HeLa_A485_30min_R1 4 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 SS(0.003)S(0.997)PTQYGLTK;SS(0.003)S(0.997)PTQYGLTK;S(0.001)S(0.098)S(0.901)PT(0.001)QYGLTK;SS(0.02)S(0.98)PTQYGLTK ;;; 271.04 1.37E-34 6734370000 7240600 7680840 6155620 8089740 9309190 7999750 11140640 11475880 6810800 10659060 TRUE FALSE FALSE 8851246.49 8579047.424 8432839.995 8531662.012 8382334.357 8418604.54 8760351.253 8661402.437 8177665.088 8001952.507 1.106135844 1.072119263 1.053847794 1.066197532 1.047536129 1.052068796 1.094776712 1.082411128 1.021958713 1 22.93192064 -7.903681329 4.311088449 1.000807167 1.07027762 0.655170215 0.017934663 0.127464256 3.947347135 0.018303083 0.004812297 1.25E-08 7.903681329 0.069470452 SSS(ph)PTQYGLTK ddPTM_HeLa_A486_30min_R1 4 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 SS(0.001)S(0.999)PTQYGLTK;S(0.003)S(0.019)S(0.802)PT(0.176)QYGLTK;SS(0.016)S(0.983)PTQYGLTK;S(0.031)S(0.141)S(0.828)PTQYGLTK ;;; 316.42 8.94E-55 8053180000 6635500 6574600 4202060 2351240 6848630 6532230 8247900 7684400 5497000 7602400 TRUE FALSE FALSE 6170385.716 6053604.752 5829210.167 5473805.545 5989610.964 5726349.877 6184188.183 5934829.869 5973484.386 5698709.557 1.082768942 1.062276414 1.022900028 0.960534221 1.051046891 1.004850277 1.085190975 1.041433997 1.048217026 1 22.44220383 -6.727104461 24.99960834 1.047163559 1.029540383 0.025169199 0.036725241 676.0249104 492221.133 0.014544688 0.01126561 1.87E-07 6.727104461 -0.017623176 SSS(ph)PTSSLTQPIEMPTLSS(ph)SPTEERPTVGPGQQDNPLLK ddPTM_HeLa_A486_30min_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 0 S(0.152)S(0.171)S(0.196)PT(0.16)S(0.16)S(0.16)LTQPIEMPTLS(0.013)S(0.359)S(0.33)PT(0.297)EERPTVGPGQQDNPLLK 213.75 3.23E-30 135610000 68515 59936 29950 27036 51773 55425 72154 81405 57063 74515 TRUE FALSE FALSE 63712.45231 55186.45308 41547.44209 62941.17432 45279.14758 48587.22702 54100.30603 62870.85856 62009.26678 55855.95899 1.140656314 0.988013707 0.743831864 1.126847976 0.810641307 0.869866491 0.968568207 1.125589099 1.110163856 1 15.76942358 -7.156524057 5.175080863 1.087532212 0.939917438 0.189624576 0.121440447 0.341758732 13.64306207 0.05870761 0.033174367 6.97E-08 7.156524057 -0.147614774 SSS(ph)PTSYWK ddPTM_HeLa_A485_30min_R1 2 SSSPTSYWK 9 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(0.001)S(0.026)S(0.97)PT(0.002)S(0.001)YWK;SSS(0.998)PT(0.001)S(0.001)YWK ; 115.23 0.00069095 979060000 2074110 2027220 1525660 2556700 2226400 1970920 2455300 2228500 1855630 3207100 TRUE FALSE FALSE 2535488.614 2264285.745 2090065.122 2696366.047 2004731.799 2074114.324 1930705.097 1681956.881 2228037.92 2407628.992 1.053106032 0.9404629 0.868100994 1.119925892 0.832658107 0.861475888 0.801911384 0.698594711 0.925407497 1 21.19918166 -5.815920195 24.9977509 0.836105889 0.982382505 0.327720698 0.097112159 100.7330183 46219.21479 0.029390831 0.033326094 1.53E-06 5.815920195 0.146276616 SSS(ph)PVGLAK ddPTM_HeLa_A485_30min_R1 4 SSSPVGLAK 9 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.002)S(0.013)S(0.984)PVGLAK;S(0.011)S(0.179)S(0.81)PVGLAK;S(0.004)S(0.026)S(0.97)PVGLAK;S(0.005)S(0.028)S(0.968)PVGLAK ;;; 199.4 9.68E-10 5772110000 8780980 8883470 7034270 11408880 12001830 9784970 14677560 15124150 8567510 14556430 TRUE FALSE FALSE 10734278.71 9922314.541 9636539.193 12032118.23 10806885.66 10297295.9 11541579.4 11414928.5 10286930.67 10927779.89 0.982292727 0.90798997 0.881838698 1.101057886 0.988936982 0.942304475 1.056168729 1.044578918 0.941355955 1 23.38149699 -5.239199392 24.99833649 1.010633258 0.922435417 0.369146687 0.051859457 869.0740236 976861.2697 0.014103546 0.024402813 5.77E-06 5.239199392 -0.088197841 SSS(ph)PVGLAK ddPTM_HeLa_A486_30min_R1 4 SSSPVGLAK 9 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 SSS(1)PVGLAK;S(0.001)S(0.022)S(0.976)PVGLAK;S(0.075)S(0.027)S(0.898)PVGLAK;SS(0.001)S(0.998)PVGLAK ;;; 199.17 9.81E-10 4793240000 8901730 8796340 4890370 3442780 8818900 9083900 11060200 10652470 6670160 10618740 TRUE FALSE FALSE 8277764.696 8099285.983 6784052.233 8014965.828 7712751.329 7963220.776 8292820.977 8227135.123 7248334.839 7959738.388 1.039954367 1.017531681 0.85229588 1.006938349 0.968970455 1.0004375 1.041845922 1.033593659 0.910624758 1 22.92428958 -6.274046836 17.17959964 1.002184279 0.974102171 0.025053064 0.057545217 45.04734747 61376.91822 0.02062546 0.018469091 5.32E-07 6.274046836 -0.028082108 SSS(ph)PVQVEEEPVR ddPTM_HeLa_A485_30min_R1 4 SSSPVQVEEEPVR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 S(0.003)S(0.006)S(0.991)PVQVEEEPVR;S(0.027)S(0.149)S(0.824)PVQVEEEPVR;S(0.023)S(0.023)S(0.955)PVQVEEEPVR;SS(0.015)S(0.985)PVQVEEEPVR ;;; 257.04 1.32E-42 1033020000 675490 864560 833120 671490 1041390 830390 994450 1116770 774200 926780 TRUE FALSE FALSE 825750.4201 965662.7713 1141325.757 708171.7984 937705.5551 873867.9364 781977.6336 842880.4065 929574.8386 695750.8021 1.18684796 1.387943454 1.6404232 1.017852651 1.347760653 1.256007084 1.123933499 1.211468825 1.336074404 1 19.40821114 -14 0.095619672 0.103743123 1.486359502 0.230046348 0.158482792 289.8559823 1.900252568 52.27180407 3.117905372 1.00E-14 14 1.38261638 SSS(ph)PVQVEEEPVR ddPTM_HeLa_A486_30min_R1 1 SSSPVQVEEEPVR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 SS(0.01)S(0.99)PVQVEEEPVR 232.17 3.13E-28 288190000 242500 277980 231890 84939 309300 257610 278350 294680 234410 281170 TRUE FALSE FALSE 225502.0023 255951.8524 321684.0182 197742.2846 270504.7099 225828.6974 208703.8859 227587.7968 254728.8475 210763.2019 1.069930615 1.21440484 1.526281701 0.938220158 1.283453219 1.071480673 0.990229243 1.079827004 1.208602096 1 17.68526348 -5.287251924 24.99987073 1.089184489 1.264625784 0.268665919 0.142067019 1047.571803 1014588.109 0.039933451 0.059253995 5.16E-06 5.287251924 0.175441295 SSS(ph)PVTELAS(ph)RSPIRQDR ddPTM_HeLa_A485_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.255)S(0.326)S(0.419)PVTELAS(0.558)RS(0.442)PIRQDR 129.07 6.10E-06 699500000 222370 323160 313010 250180 445630 324410 434400 537660 291430 352900 TRUE FALSE FALSE 271835.4393 360950.7509 428805.4244 263846.6999 401261.5125 341395.606 341586.8913 405798.042 349917.3278 264928.5246 1.026070861 1.362445782 1.618570235 0.995916541 1.514602903 1.288632873 1.2893549 1.531726501 1.32079899 1 18.01524366 -8.058427773 21.90750804 0.999999998 1.337625292 0.207201325 0.191599529 8412.292035 3154188.335 0.176952676 0.045688984 8.74E-09 8.058427773 0.337625293 SSS(ph)PVTELASR ddPTM_HeLa_A485_30min_R1 8 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.001)S(0.003)S(0.995)PVT(0.001)ELASR;SSS(1)PVTELASR;SS(0.005)S(0.995)PVTELASR;SS(0.004)S(0.996)PVTELASR;SSS(1)PVTELASR;SS(0.006)S(0.994)PVTELASR;S(0.003)S(0.137)S(0.792)PVT(0.067)ELAS(0.001)R;S(0.001)S(0.096)S(0.903)PVTELASR ;;;;;;; 317.81 7.70E-55 16898870000 7149830 8194630 7738680 7860110 8970090 7010370 8615470 7620180 7256200 9871820 TRUE FALSE FALSE 8740285.017 9152920.695 10601539.77 8289487.906 8076996.344 7377422.133 6774704.453 5751318.907 8712452.782 7410956.951 1.179373335 1.235052471 1.430522379 1.118544874 1.089872252 0.995474968 0.914147052 0.776056175 1.175617783 1 22.82122841 -5.823676629 1.684627556 0.954339864 1.273509106 0.561867059 0.11457594 0.253795804 1.489600346 0.041824251 0.053160786 1.50E-06 5.823676629 0.319169241 SSS(ph)PVTELASR ddPTM_HeLa_A486_30min_R1 8 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SS(0.005)S(0.995)PVTELASR;S(0.169)S(0.037)S(0.792)PVT(0.002)ELASR;SSS(1)PVTELASR;S(0.004)S(0.001)S(0.995)PVTELASR;SSS(1)PVTELASR;SSS(1)PVTELASR;SS(0.001)S(0.999)PVTELASR;S(0.001)S(0.04)S(0.959)PVTELASR ;;;;;;; 329.7 3.52E-67 20182050000 11293040 13047980 8971440 3258146 10964050 11066780 11331570 11008700 10345270 11738030 TRUE FALSE FALSE 10501456.21 12014010.54 12445421.83 7585128.546 9588836.613 9701473.202 8496291.333 8502259.328 11242006.33 8798750.886 1.19351671 1.365422286 1.414453255 0.862068792 1.089795215 1.102596644 0.965624717 0.966302994 1.27768208 1 23.0688673 -5.250270023 24.98987009 1.038188785 1.328559914 0.562867209 0.115780651 526.6557658 1178316.223 0.030946926 0.052974296 5.62E-06 5.250270023 0.290371129 SSS(ph)PVTELASRS(ph)PIRQDR ddPTM_HeLa_A485_30min_R1 1 SSSPVTELASRSPIRQDR 18 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.251)S(0.326)S(0.423)PVTELAS(0.023)RS(0.977)PIRQDR 163.15 3.26E-12 996590000 95211 125240 131080 99976 200610 142170 196210 210430 120160 150230 TRUE FALSE FALSE 116390.3585 139885.7286 179571.9467 105437.4357 180636.564 149613.8014 154288.1306 158821.7126 144275.0098 112780.4258 1.032008504 1.240336943 1.592226182 0.934891272 1.601665916 1.326593692 1.368039973 1.408238278 1.279255765 1 16.78315717 -4.350641706 4.025132026 1.331882894 1.027753054 0.13849382 0.20501224 0.36362754 9.660777764 0.047689226 0.253508892 4.46E-05 4.350641706 -0.30412984 SSS(ph)QENLLDEVMK ddPTM_HeLa_A485_30min_R1 4 SSSQENLLDEVMK 13 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 SS(0.003)S(0.997)QENLLDEVMK;SS(0.023)S(0.977)QENLLDEVMK;SS(0.025)S(0.974)QENLLDEVMK;S(0.001)S(0.024)S(0.975)QENLLDEVMK ;;; 262.73 1.79E-41 528520000 1313150 1151443 838751 1581740 1436720 1274653 1906310 1849840 981425 1969670 TRUE FALSE FALSE 1605255.687 1286094.243 1149039.898 1668146.451 1293675.112 1341391.86 1499011.295 1396163.84 1178387.995 1478667.518 1.085609623 0.869765669 0.777077933 1.128141675 0.874892494 0.907162593 1.013758182 0.944204037 0.796925597 1 20.49586626 -7.583427496 24.99942668 0.889163253 0.945866805 0.032137681 0.109073566 271.2173753 111974.2797 0.071419178 0.026990272 2.61E-08 7.583427496 0.056703552 SSS(ph)QENLLDEVMK ddPTM_HeLa_A486_30min_R1 2 SSSQENLLDEVMK 13 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 SS(0.005)S(0.995)QENLLDEVMK;S(0.023)S(0.023)S(0.954)QENLLDEVMK ; 243.9 4.31E-35 247560000 668810 689920 394910 305870 653770 724100 897890 832840 542680 950410 TRUE FALSE FALSE 621929.8727 635248.2266 547829.7281 712080.8178 571768.0704 634767.9041 673228.4251 643220.5128 589719.9393 712421.1499 0.872980642 0.891675137 0.768968928 0.999522288 0.80257032 0.891000926 0.944986579 0.902865549 0.827768714 1 19.44237082 -14 0.280679989 1.870973179 0.872204679 0.240418502 0.063891827 332.9418968 3.19186039 169.2056936 0.070555551 1.00E-14 14 -0.9987685 SSS(ph)QGPLSSIR ddPTM_HeLa_A485_30min_R1 3 SSSQGPLSSIR 11 0 A0A0U1RQE4 A0A0U1RQE4 1 0 S(0.001)S(0.028)S(0.971)QGPLSSIR;S(0.002)S(0.062)S(0.936)QGPLSSIR;SS(0.01)S(0.99)QGPLSSIR ;; 208.28 5.70E-15 2038750000 1007000 1319980 1227890 1115510 1518320 1278310 1535760 1691680 1110840 1446310 TRUE FALSE FALSE 1231003.676 1474340.179 1682137.608 1176447.487 1367150.73 1345240.335 1207632.33 1276792.828 1333775.399 1085771.534 1.133759393 1.357873302 1.54925558 1.083512921 1.259151383 1.238971821 1.112234288 1.175931388 1.228412568 1 20.05028914 -7.966255041 0.221256733 0.936115219 1.362248319 0.292520471 0.123913735 4.166115958 0.76389112 0.661339107 0.429484898 1.08E-08 7.966255041 0.4261331 SSS(ph)QGPLSSIR ddPTM_HeLa_A486_30min_R1 4 SSSQGPLSSIR 11 0 A0A0U1RQE4 A0A0U1RQE4 1 0 SS(0.01)S(0.989)QGPLSSIR;S(0.005)S(0.315)S(0.68)QGPLSSIR;SS(0.002)S(0.998)QGPLSSIR;S(0.001)S(0.016)S(0.983)QGPLSSIR ;;; 192.71 5.18E-11 2439330000 1594450 1785770 1449780 548890 1917640 1635140 1839530 2013940 1573350 1971600 TRUE FALSE FALSE 1482687.289 1644259.082 2011173.642 1277843.659 1677111.71 1433413.052 1379260.137 1555409.826 1709729.245 1477898.527 1.003240251 1.112565614 1.360833376 0.864635586 1.134794899 0.969899506 0.933257671 1.052446969 1.156865112 1 20.49511579 -5.275826346 24.98335627 1.017754108 1.154248362 0.241147865 0.116044181 1156.490286 2008274.379 0.032671259 0.048715206 5.30E-06 5.275826346 0.136494254 SSS(ph)QIPEGFGLTSGGSNYSLAR ddPTM_HeLa_A485_30min_R1 3 SSSQIPEGFGLTSGGSNYSLAR 22 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 S(0.133)S(0.133)S(0.734)QIPEGFGLTSGGSNYSLAR;S(0.011)S(0.011)S(0.979)QIPEGFGLTSGGSNYSLAR;S(0.136)S(0.136)S(0.728)QIPEGFGLTSGGSNYSLAR ;; 232.29 8.60E-37 501020000 241359 268832 227853 231208 307627 307989 401840 455580 295068 395800 TRUE FALSE FALSE 295048.4769 300269.5639 312145.3065 243838.3076 276998.5757 324114.8278 315983.6013 343848.2907 354285.4411 297134.3442 0.992980053 1.010551522 1.050519109 0.8206332 0.932233453 1.090802306 1.063436817 1.157214901 1.192340933 1 18.18075584 -6.340026788 4.941292164 1.110716864 0.96143072 0.465006787 0.074521496 0.210847486 9.278718154 0.028249735 0.024902865 4.57E-07 6.340026788 -0.149286144 SSS(ph)QIPEGFGLTSGGSNYSLAR ddPTM_HeLa_A486_30min_R1 3 SSSQIPEGFGLTSGGSNYSLAR 22 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 S(0.12)S(0.12)S(0.76)QIPEGFGLTSGGSNYSLAR;S(0.031)S(0.031)S(0.938)QIPEGFGLTSGGSNYSLAR;S(0.101)S(0.101)S(0.797)QIPEGFGLTSGGSNYSLAR ;; 179.85 2.15E-19 705620000 367978 411977 315156 121160 440980 329572 369520 417070 336961 391001 TRUE FALSE FALSE 342184.6424 379330.4421 437192.8434 282066.6031 385668.1764 288912.7575 277062.1876 322112.2656 366169.0508 293091.8046 1.167499865 1.294237628 1.491658369 0.962383112 1.315861346 0.985741508 0.945308546 1.099014918 1.249332274 1 18.1609931 -5.269785365 24.97940732 1.084118812 1.315442526 0.390729747 0.136181007 635.9065601 1903257.471 0.03863834 0.05839035 5.37E-06 5.269785365 0.231323714 SSS(ph)QPSS(ph)CCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_A486_30min_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 S(0.307)S(0.332)S(0.36)QPS(0.309)S(0.335)CCS(0.309)DPS(0.048)KPGGNVEGATQSLAEQMR 72.231 0.0018059 139260000 46376 64193 57736 29992 72972 61972 79327 85329 43738 64752 TRUE FALSE FALSE 43125.28189 59106.11289 80092.92542 69822.89171 63819.17132 54326.52473 59478.54556 65901.44942 47529.24506 48537.67774 0.888490836 1.217736728 1.650118612 1.438529715 1.314837757 1.119265018 1.225409792 1.357737998 0.979223714 1 15.56681746 -6.245057285 18.7600903 1.164253697 1.324196426 0.127667365 0.206148877 75.18337126 86094.28945 0.072119238 0.071619553 5.69E-07 6.245057285 0.15994273 SSS(ph)QPSSCCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_A485_30min_R1 3 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SS(0.005)S(0.995)QPSSCCSDPSKPGGNVEGATQSLAEQMR;S(0.147)S(0.147)S(0.54)QPS(0.103)S(0.01)CCS(0.052)DPSKPGGNVEGATQSLAEQMR;S(0.002)S(0.036)S(0.858)QPS(0.03)S(0.03)CCS(0.044)DPSKPGGNVEGATQSLAEQMR ;; 299.7 5.77E-93 2943060000 1712030 1439360 1218830 2218620 1993650 1435210 2220950 1898910 1554440 2748870 TRUE FALSE FALSE 2092865.167 1607680.631 1669725.937 2339817.593 1795155.206 1510355.376 1746425.889 1433199.345 1866401.85 2063627.298 1.014168193 0.779055711 0.80912185 1.133837295 0.86990282 0.731893486 0.846289391 0.694504936 0.904427777 1 20.97675101 -5.999860293 24.99994853 0.815218732 0.925029158 0.113553835 0.122829976 9.860491311 1763831.846 0.03798978 0.042644452 1.00E-06 5.999860293 0.109810425 SSS(ph)QPSSCCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_A486_30min_R1 4 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SS(0.001)S(0.999)QPSSCCSDPSKPGGNVEGATQSLAEQMR;S(0.18)S(0.18)S(0.639)QPS(0.001)SCCSDPSKPGGNVEGATQSLAEQMR;S(0.002)S(0.047)S(0.765)QPS(0.026)S(0.005)CCS(0.155)DPS(0.001)KPGGNVEGATQSLAEQMR;S(0.12)S(0.12)S(0.665)QPS(0.029)S(0.029)CCS(0.035)DPS(0.002)KPGGNVEGATQSLAEQMR ;;; 308.15 2.64E-109 3205580000 2230540 2366090 1289040 894630 2288330 2442930 2951470 2883790 1946400 2770960 TRUE FALSE FALSE 2074190.665 2178592.411 1788190.81 2082743.852 2001306.314 2141546.134 2212980.989 2227213.97 2115115.519 2077093.58 0.998602415 1.048865796 0.860910085 1.002720278 0.96351283 1.031030164 1.0654219 1.072274254 1.018305357 1 20.98613479 -6.354366429 4.464458938 1.045287279 0.97426555 0.286394999 0.048890679 0.285388556 9.860531404 0.017779922 0.015616938 4.42E-07 6.354366429 -0.071021729 SSS(ph)RPCS(ph)PVHHHEGHAK ddPTM_HeLa_A485_30min_R1 4 SSSRPCSPVHHHEGHAK 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 2 0 S(0.197)S(0.237)S(0.702)RPCS(0.865)PVHHHEGHAK;S(0.274)S(0.347)S(0.432)RPCS(0.947)PVHHHEGHAK;S(0.406)S(0.446)S(0.464)RPCS(0.684)PVHHHEGHAK;S(0.368)S(0.405)S(0.432)RPCS(0.795)PVHHHEGHAK ;;; 124.66 8.58E-06 642683000 244548 239886 217018 267962 293854 222389 328668 350398 213568 340111 TRUE FALSE FALSE 298946.8589 267938.581 297301.9891 282600.0855 264596.864 234032.9442 258445.3968 264462.3411 256429.1386 255327.587 1.170836502 1.049391427 1.164394308 1.106813756 1.036303468 0.916598739 1.012211018 1.035776605 1.004314268 1 17.9619899 -5.834045027 3.533220198 0.995557081 1.121938312 0.673086303 0.042447649 0.143773671 3.573838945 0.013549079 0.016022722 1.47E-06 5.834045027 0.126381231 SSS(ph)RPCS(ph)PVHHHEGHAK ddPTM_HeLa_A486_30min_R1 4 SSSRPCSPVHHHEGHAK 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 2 0 S(0.136)S(0.167)S(0.73)RPCS(0.967)PVHHHEGHAK;S(0.292)S(0.346)S(0.408)RPCS(0.954)PVHHHEGHAK;S(0.402)S(0.461)S(0.488)RPCS(0.649)PVHHHEGHAK;S(0.313)S(0.366)S(0.421)RPCS(0.9)PVHHHEGHAK ;;; 125.31 8.25E-06 589673000 358483 371305 265507 143719 400092 360296 403751 404710 309401 415313 TRUE FALSE FALSE 333355.1929 341881.4395 368318.4209 334585.0952 349908.7307 315846.3427 302728.2294 312566.3678 336220.1278 311315.9216 1.07079391 1.098181673 1.18310178 1.074744566 1.123966705 1.014552488 0.972414863 1.004016647 1.079996571 1 18.24801984 -6.267091021 23.45535163 1.011835812 1.111577443 0.607056804 0.03857089 138.3734185 574271.995 0.013618241 0.012359424 5.41E-07 6.267091021 0.099741631 SSS(ph)SERPEPQQK ddPTM_HeLa_A485_30min_R1 4 SSSSERPEPQQK 12 1 P78362;C9J2M4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 S(0.142)S(0.142)S(0.701)S(0.015)ERPEPQQK;S(0.007)S(0.415)S(0.555)S(0.023)ERPEPQQK;S(0.144)S(0.144)S(0.695)S(0.017)ERPEPQQK;S(0.001)S(0.028)S(0.954)S(0.017)ERPEPQQK ;;; 122.93 0.00010133 1504350000 593330 615240 468153 715550 818370 653650 944240 954510 577153 925080 TRUE FALSE FALSE 725314.2115 687186.9661 641342.2762 754638.6846 736890.2093 687874.1033 742495.4103 720414.9259 692982.3131 694474.5808 1.044407141 0.98950629 0.923492801 1.08663255 1.061075855 0.990495725 1.069146994 1.037352476 0.997851228 1 19.40556236 -5.270510543 24.99955649 1.036905644 0.986172497 0.23199948 0.040581965 929.3494492 2561224.073 0.011484473 0.017307732 5.36E-06 5.270510543 -0.050733148 SSS(ph)SERPEPQQK ddPTM_HeLa_A486_30min_R1 3 SSSSERPEPQQK 12 1 P78362;C9J2M4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 S(0.003)S(0.06)S(0.933)S(0.004)ERPEPQQK;S(0.001)S(0.03)S(0.953)S(0.016)ERPEPQQK;S(0.004)S(0.194)S(0.779)S(0.022)ERPEPQQK ;; 133.48 1.02E-05 1715480000 797040 774290 436157 309833 775510 825260 983440 993370 636500 984630 TRUE FALSE FALSE 741171.6119 712932.4405 605048.6711 721306.8821 678238.3045 723447.8118 737372.9102 767201.3361 691672.3325 738072.2391 1.004199281 0.965938566 0.819768905 0.977284937 0.918932143 0.980185642 0.999052493 1.039466458 0.937133651 1 19.4934025 -6.413177064 4.074856432 0.996534721 0.934639612 0.21644783 0.051487941 0.35961103 10.29172758 0.01922844 0.016593419 3.86E-07 6.413177064 -0.061895109 SSS(ph)SPELQTLQDILGDPGDKADVGR ddPTM_HeLa_A485_30min_R1 4 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 S(0.11)S(0.11)S(0.389)S(0.389)PELQT(0.002)LQDILGDPGDKADVGR;S(0.105)S(0.105)S(0.395)S(0.395)PELQTLQDILGDPGDKADVGR;S(0.087)S(0.087)S(0.44)S(0.385)PELQTLQDILGDPGDKADVGR;S(0.118)S(0.118)S(0.762)S(0.003)PELQTLQDILGDPGDKADVGR ;;; 153.01 1.10E-09 301842000 97227 99406 75928 132320 124921 120561 157428 173058 86599 178104 TRUE FALSE FALSE 118854.8107 111030.667 104016.9268 139548.3065 112483.4266 126873.3875 123792.2217 130615.2542 103978.625 133705.9506 0.888926859 0.830409316 0.777952861 1.043695557 0.841274649 0.948898587 0.925854244 0.976884377 0.777666398 1 17.02870415 -5.233420548 24.99975356 0.926488917 0.83222765 0.258392668 0.075998068 1019.995417 910087.8825 0.01947346 0.033720512 5.84E-06 5.233420548 -0.094261267 SSS(ph)SPELQTLQDILGDPGDKADVGR ddPTM_HeLa_A486_30min_R1 1 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 S(0.095)S(0.095)S(0.403)S(0.403)PELQT(0.004)LQDILGDPGDKADVGR 85.814 0.00206 273540000 66721 65689 30724 24922 59372 54838 85743 78423 50224 92980 TRUE FALSE FALSE 62044.20245 60483.5644 42621.15562 58019.67549 51925.01014 48072.64511 64289.1945 60567.79486 54577.45676 69697.2028 0.890196449 0.867804761 0.611518883 0.832453429 0.745008523 0.689735645 0.922407097 0.869013281 0.783065239 1 16.08881314 -8.712312207 0.515785508 1.011517601 0.780863863 0.301672119 0.09156714 3.386413075 1.393432714 0.19529037 0.047305061 1.94E-09 8.712312207 -0.230653738 SSS(ph)SPELQTLQDILGDPGDKADVGRLS(ph)PEVK ddPTM_HeLa_A485_30min_R1 2 SSSSPELQTLQDILGDPGDKADVGRLSPEVK 31 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 2 0 S(0.096)S(0.105)S(0.66)S(0.128)PELQT(0.012)LQDILGDPGDKADVGRLS(1)PEVK;S(0.092)S(0.109)S(0.778)S(0.021)PELQTLQDILGDPGDKADVGRLS(1)PEVK ; 222.36 4.28E-39 357960000 203920 132465 87898 374870 223980 222320 434230 406180 167155 555380 TRUE FALSE FALSE 249281.3005 147955.6295 120415.1279 395348.1989 201679.7648 233960.3314 341453.2132 306563.7181 200701.4753 416933.987 0.597891533 0.35486584 0.288811015 0.948227324 0.483721095 0.561144782 0.818962291 0.73528119 0.481374706 1 18.66945945 -14 0.062927963 2.454107756 1.82E-12 0.333933316 0.187219176 432.6787733 1.97675954 95.52069714 14.58821069 1.00E-14 14 -2.454107756 SSS(ph)SSAS(ph)PSS(ph)PSSR ddPTM_HeLa_A485_30min_R1 1 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 3 0 S(0.041)S(0.053)S(0.902)S(0.006)S(0.014)AS(0.984)PS(0.086)S(0.872)PS(0.024)S(0.019)R 94.639 0.00010873 0 59372 75995 63359 73825 85007 82493 85490 96641 68218 95974 TRUE FALSE FALSE 72579.09657 84881.95418 86798.13069 77857.87282 76543.4046 86812.20592 67224.36311 72939.64322 81908.72687 72049.44807 1.007351181 1.178106931 1.204702229 1.0806172 1.062373226 1.204897584 0.933030924 1.012355336 1.136840449 1 16.13669976 -6.75866614 24.99986777 1.021586296 1.12454293 0.306500145 0.075469679 93.9807068 847215.6868 0.029974326 0.022163619 1.74E-07 6.75866614 0.102956634 SSS(ph)SSASPSSPSSR ddPTM_HeLa_A485_30min_R1 1 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.008)S(0.186)S(0.76)S(0.037)S(0.008)AS(0.001)PSSPSSR 68.277 0.008093 0 56310 76224 79871 62827 83992 68979 83267 81729 74450 82867 TRUE FALSE FALSE 68835.96523 85137.73374 109418.6066 66259.07992 75629.46157 72590.63378 65476.32522 61684.8346 89391.4321 62209.78195 1.106513527 1.368558626 1.758864975 1.065091017 1.215716551 1.166868481 1.052508515 0.991561659 1.436935307 1 15.92485383 SSS(ph)SSASPSSPSSR ddPTM_HeLa_A486_30min_R1 2 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.001)S(0.024)S(0.96)S(0.014)SASPSSPSSR;S(0.004)S(0.162)S(0.816)S(0.017)S(0.001)ASPSSPSSR ; 112.42 0.00023367 55132000 113021 130703 115692 40319 140201 121221 123649 124068 112156 123380 TRUE FALSE FALSE 105098.8115 120345.6183 160491.0407 93864.66961 122615.6833 106265.9855 92710.71237 95820.42479 121877.7724 92484.84493 1.136389552 1.301246905 1.735322591 1.014919468 1.32579217 1.149009717 1.00244221 1.036066232 1.317813448 1 16.49692936 -5.88650288 1.370184412 1.098556018 1.353095367 0.216083553 0.192619407 0.640241079 2.507027745 0.078450027 0.097820881 1.30E-06 5.88650288 0.254539349 SSS(ph)TEPPPPVR ddPTM_HeLa_A485_30min_R1 2 SSSTEPPPPVR 11 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 SSS(0.999)T(0.001)EPPPPVR;SSS(0.995)T(0.005)EPPPPVR ; 198.4 1.35E-14 1929750000 1497090 1605040 1573600 1603970 1875090 1407130 1836350 1663550 1348080 2080600 TRUE FALSE FALSE 1830112.506 1792735.466 2155740.123 1691590.82 1688399.456 1480805.151 1443998.821 1255561.754 1618627.291 1561944.711 1.171688404 1.147758595 1.380164169 1.083003008 1.080959809 0.94805222 0.924487795 0.803845197 1.036289748 1 20.57491196 -5.905446792 1.609060937 0.926235368 1.220393336 0.659204466 0.08742366 0.215785418 1.150501437 0.0330182 0.039521602 1.24E-06 5.905446792 0.294157969 SSS(ph)TEPPPPVR ddPTM_HeLa_A486_30min_R1 3 SSSTEPPPPVR 11 0 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 SSS(0.999)T(0.001)EPPPPVR;SSS(1)TEPPPPVR;SS(0.018)S(0.97)T(0.011)EPPPPVR ;; 219.61 7.95E-18 2473210000 2177850 2604090 1940670 754640 2639090 2293020 2288220 2464040 2182930 2528220 TRUE FALSE FALSE 2025193.961 2397732.424 2692149.397 1756840.057 2308070.724 2010130.506 1715683.154 1903031.882 2372148.13 1895137.256 1.068626536 1.265202516 1.420556421 0.927025234 1.217891061 1.060678059 0.905308124 1.004165728 1.251702547 1 20.85387091 -5.268709342 24.99323844 1.053681471 1.252835895 0.326233222 0.131084813 663.0009516 2279316.599 0.037174937 0.056409317 5.39E-06 5.268709342 0.199154424 SSS(ph)TSDILEPFTVER ddPTM_HeLa_A485_30min_R1 5 SSSTSDILEPFTVER 15 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 SSS(1)TSDILEPFTVER;SSS(0.999)T(0.001)SDILEPFTVER;SSS(1)TSDILEPFTVER;SSS(0.999)T(0.001)SDILEPFTVER;SS(0.024)S(0.919)T(0.055)S(0.002)DILEPFTVER ;;;; 388 2.71E-134 1640190000 1974410 2588420 2386760 2069270 2949460 2283700 2797210 3392080 2184200 2798250 TRUE FALSE FALSE 2413610.693 2891113.203 3269721.845 2182308.98 2655801.406 2403271.001 2199563.232 2560167.061 2622548.905 2100697.773 1.148956658 1.376263278 1.556493222 1.038849571 1.264247261 1.144034631 1.047063152 1.218722224 1.248417997 1 21.00243719 -5.276050476 24.98451774 1.148252993 1.362140294 0.399443489 0.12493145 804.2725542 1375279.084 0.03510686 0.052331218 5.30E-06 5.276050476 0.213887301 SSS(ph)TSDILEPFTVER ddPTM_HeLa_A486_30min_R1 6 SSSTSDILEPFTVER 15 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 S(0.118)S(0.118)S(0.734)T(0.025)S(0.004)DILEPFTVER;S(0.003)S(0.003)S(0.994)TSDILEPFTVER;SSS(0.995)T(0.004)SDILEPFTVER;SSS(0.989)T(0.011)SDILEPFTVER;S(0.02)S(0.02)S(0.949)T(0.01)SDILEPFTVER;SSS(0.957)T(0.043)SDILEPFTVER ;;;;; 426.94 1.87E-171 1980300000 3499950 3667000 2991920 1162838 3800920 3164970 3697260 3725840 2989440 3625080 TRUE FALSE FALSE 3254621.579 3376413.565 4150471.55 2707145.631 3324173.171 2774508.18 2772166.442 2877547.567 3248567.066 2717336.373 1.197724953 1.24254531 1.527404407 0.996249731 1.223320456 1.021039651 1.020177874 1.058958911 1.195496847 1 21.37376173 -5.28314485 24.99927631 1.077884467 1.314556975 0.522240339 0.108983282 630.0084797 725610.8635 0.03044461 0.045202341 5.21E-06 5.28314485 0.236672508 SSS(ph)VGS(ph)SSSYPISPAVSR ddPTM_HeLa_A485_30min_R1 5 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 SS(0.011)S(0.989)VGS(0.956)S(0.044)SSYPISPAVSR;SSS(1)VGS(0.708)S(0.29)S(0.002)SYPISPAVSR;S(0.008)S(0.196)S(0.795)VGS(0.975)S(0.025)SSYPISPAVSR;SSS(1)VGS(0.652)S(0.347)S(0.001)SYPISPAVSR;SS(0.002)S(0.998)VGS(0.995)S(0.005)SSYPISPAVSR ;;;; 481.08 3.44E-250 9227330000 2797900 3267760 2856490 2772600 4089420 3105580 4200200 4491720 2933630 3834410 TRUE FALSE FALSE 3420283.202 3649896.106 3913224.519 2924060.117 3682262.986 3268183.367 3302792.958 3390118.627 3522382.632 2878562.154 1.188191541 1.267958068 1.359437216 1.015805795 1.279202181 1.135352718 1.14737594 1.177712499 1.22366044 1 21.45691693 -14 0.140786569 0.334242114 1.267619644 0.324164927 0.087840282 165.5971505 1.423211123 31.11876778 0.5266453 1.00E-14 14 0.93337753 SSS(ph)VGS(ph)SSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 6 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 S(0.001)S(0.002)S(0.997)VGS(1)SSSYPISPAVSR;S(0.071)S(0.093)S(0.836)VGS(0.978)S(0.021)S(0.001)SYPISPAVSR;S(0.077)S(0.102)S(0.821)VGS(0.996)S(0.004)SSYPISPAVSR;S(0.071)S(0.089)S(0.853)VGS(0.963)S(0.016)S(0.003)S(0.002)Y(0.004)PISPAVSR;SSS(1)VGS(0.997)S(0.003)SSYPISPAVSR;S(0.053)S(0.073)S(0.874)VGS(0.997)S(0.003)SSYPISPAVSR ;;;;; 340.31 1.14E-101 11733290000 5601950 6339450 4796770 2118584 6433900 5809040 6810960 7150350 5192970 6219680 TRUE FALSE FALSE 5209282.233 5837088.894 6654207.806 4932170.619 5626900.268 5092379.707 5106785.769 5522371.396 5643100.821 4662231.645 1.117336638 1.251994611 1.427258084 1.057899091 1.206911346 1.092262267 1.095352217 1.184490994 1.210386195 1 22.15258926 -5.290123057 24.99251075 1.130038468 1.264176367 0.328665397 0.094010916 848.979165 739726.1413 0.026325136 0.039055348 5.13E-06 5.290123057 0.134137899 SSS(ph)VGSS(ph)SSYPISPAVSR ddPTM_HeLa_A485_30min_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 SS(0.003)S(0.997)VGS(0.214)S(0.724)S(0.06)S(0.002)YPISPAVSR 380.03 4.99E-130 2612000000 1058300 1132700 1096800 1025200 1509400 1103200 1678200 1755700 1086100 1384200 TRUE FALSE FALSE 1293715.184 1265159.412 1502551.962 1081204.08 1359118.836 1160961.846 1319638.86 1325111.822 1304070.308 1039144.414 1.244981127 1.217501046 1.445951055 1.040475284 1.307921033 1.117228587 1.269928262 1.275195058 1.254946175 1 19.98696473 -11.30854229 2.002250086 0.000137006 1.241076 0.333874595 0.102362522 2181797.181 280213.7027 9860999.676 0.024459752 4.91E-12 11.30854229 1.240938994 SSS(ph)VGSSSSYPIS(ph)PAVSR ddPTM_HeLa_A485_30min_R1 4 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 SS(0.001)S(0.999)VGSSSSYPIS(1)PAVSR;SS(0.003)S(0.997)VGSSSSYPIS(1)PAVSR;SS(0.014)S(0.986)VGSSSSYPIS(1)PAVSR;S(0.275)S(0.319)S(0.372)VGS(0.004)S(0.005)S(0.007)S(0.008)Y(0.014)PIS(0.992)PAVS(0.005)R ;;; 412.64 5.96E-163 3373984000 1884950 2404113 2168933 2121764 3120067 2422259 2883759 3026375 2143525 3065586 TRUE FALSE FALSE 2304250.624 2685253.102 2971311.574 2237670.595 2809422.174 2549084.736 2267620.332 2284151.786 2573710.806 2301391.828 1.001242203 1.166795271 1.291093302 0.972311871 1.220749174 1.107627439 0.985325621 0.992508863 1.11832795 1 21.1340752 -6.623905728 5.809578903 1.024214869 1.135495604 0.222275414 0.094423905 0.314503586 15.3583095 0.035979132 0.027648295 2.38E-07 6.623905728 0.111280736 SSS(ph)VGSSSSYPIS(ph)PAVSR ddPTM_HeLa_A486_30min_R1 3 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 2 0 S(0.095)S(0.124)S(0.781)VGS(0.002)SSSYPIS(0.995)PAVS(0.003)R;S(0.006)S(0.011)S(0.983)VGSSSSYPIS(1)PAVSR;S(0.273)S(0.326)S(0.389)VGS(0.008)S(0.002)S(0.001)S(0.001)YPIS(0.973)PAVS(0.027)R ;; 227.26 2.29E-34 3179150000 2050490 2165920 1704020 784000 2461780 2043310 2272450 2221560 1772060 2410700 TRUE FALSE FALSE 1906761.24 1994284.611 2363862.179 1825191.621 2153000.597 1791227.187 1703858.974 1715759.284 1925663.588 1807045.029 1.055181918 1.103616445 1.308136843 1.010042136 1.191448228 0.99124657 0.942897906 0.949483415 1.065642282 1 20.78520103 -6.279597423 21.66320645 0.983761873 1.134837317 0.438423032 0.081240422 135.2851092 161398.4675 0.028188389 0.024941989 5.25E-07 6.279597423 0.151075444 SSS(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A485_30min_R1 8 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 SSS(0.997)VGS(0.003)SSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;S(0.004)S(0.16)S(0.836)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;S(0.03)S(0.03)S(0.939)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(0.983)VGS(0.016)SSSYPISPAVSR ;;;;;;; 449.19 1.64E-203 1.41E+11 3482982 4644360 4341935 4184210 5732100 4608247 5947910 6292750 4422761 5977510 TRUE FALSE FALSE 4257759.33 5187477.501 5948197.439 4412782.797 5161391.997 4849527.687 4677090.439 4749443.196 5310368.565 4487426.765 0.948819792 1.15600271 1.32552524 0.983365975 1.150189689 1.08069233 1.042265575 1.058389016 1.183388352 1 22.09745696 SSS(ph)VGSSSSYPISPAVSR ddPTM_HeLa_A486_30min_R1 10 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 SSS(1)VGSSSSYPISPAVSR;S(0.002)S(0.013)S(0.886)VGS(0.09)S(0.009)SSYPISPAVSR;SS(0.002)S(0.998)VGSSSSYPISPAVSR;SSS(0.999)VGSSSSYPISPAVSR;S(0.001)S(0.032)S(0.967)VGSSSSYPISPAVSR;SSS(0.977)VGS(0.022)SSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(1)VGSSSSYPISPAVSR;SSS(0.999)VGS(0.001)SSSYPISPAVSR ;;;;;;;;; 449.19 1.64E-203 1.32E+11 9731231 10328440 7790536 3057519 11834950 9813290 11650360 11535920 8761293 10118470 TRUE FALSE FALSE 9049121.959 9509976.799 10807240.18 7118058.75 10350500.21 8602626.054 8735316.703 8909442.843 9520728.931 7584739.252 1.193069618 1.25383042 1.424866408 0.938471121 1.364648127 1.134201951 1.151696375 1.174653808 1.25524802 1 22.85466815 -14 0.176431425 0.179539706 1.253532155 0.199916389 0.12592066 215.4225596 2.059034495 62.15368691 0.399150982 1.00E-14 14 1.073992449 SSS(ph)VT(ph)SIDKESR ddPTM_HeLa_A486_30min_R1 2 SSSVTSIDKESR 12 1 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 2 0 S(0.185)S(0.264)S(0.551)VT(0.675)S(0.325)IDKESR;S(0.29)S(0.355)S(0.426)VT(0.776)S(0.154)IDKESR ; 125.36 3.66E-05 2162600000 3023900 2908800 1475290 1693690 2853000 3520000 4342500 4165500 2432100 5053800 TRUE FALSE FALSE 2811940.225 2678296.094 2046561.798 3942995.914 2495150.137 3085738.189 3255960.57 3217106.582 2642916.386 3788295.585 0.742270544 0.706992375 0.54023287 1.040836393 0.658647162 0.814545254 0.859479018 0.849222694 0.69765316 1 21.85311747 -13.99999998 0.071765953 1.726304071 0.514315028 0.244823766 0.126910916 431.7707554 2.22018807 52.31937815 6.180495991 1.00E-14 13.99999998 -1.211989043 SSS(ph)VTSIDK ddPTM_HeLa_A485_30min_R1 2 SSSVTSIDK 9 0 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 S(0.008)S(0.029)S(0.962)VTSIDK;S(0.001)S(0.048)S(0.949)VT(0.001)S(0.001)IDK ; 89.679 0.0027285 261370000 1128050 1242590 898740 1242570 1189400 1179190 1364950 1503970 1149700 1904000 TRUE FALSE FALSE 1378980.831 1387900.091 1231221.326 1310448.453 1070979.16 1240930.565 1073317.282 1135118.999 1380434.244 1429367.841 0.964748745 0.970988749 0.861374722 0.91680281 0.749267704 0.868167402 0.750903477 0.794140575 0.965765568 1 20.4469458 -4.851185163 1.631925533 0.843985344 0.979628695 0.178276701 0.08108362 0.605836824 2.947914247 0.023392723 0.091814885 1.41E-05 4.851185163 0.135643351 SSS(ph)VTSIDK ddPTM_HeLa_A486_30min_R1 3 SSSVTSIDK 9 0 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 S(0.002)S(0.056)S(0.942)VTSIDK;S(0.001)S(0.028)S(0.971)VTSIDK;SS(0.015)S(0.984)VTSIDK ;; 119.53 0.00048511 646790000 1698850 1755470 1085730 493610 1634990 1589540 1612350 1655910 1542440 1850970 TRUE FALSE FALSE 1579769.388 1616360.164 1506153.733 1149149.026 1429914.309 1393438.716 1208922.976 1278895.441 1676139.941 1387475.064 1.138592994 1.164965199 1.085535713 0.828230399 1.030587392 1.004298205 0.871311498 0.921743009 1.208050497 1 20.40403041 -5.012687765 21.31671871 0.974398777 1.145147271 0.342606369 0.097211216 88.58703579 148842.0204 0.025781527 0.047796368 9.71E-06 5.012687765 0.170748494 SSS(ph)VTSIDKESR ddPTM_HeLa_A485_30min_R1 1 SSSVTSIDKESR 12 1 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 S(0.291)S(0.291)S(0.403)VT(0.015)S(0.001)IDKESR 99.668 0.00026019 0 94695 113330 78256 118240 141370 149190 193990 219940 110590 191020 TRUE FALSE FALSE 115759.5761 126582.9577 107206.1509 124699.1518 127294.7064 157001.3577 152542.4517 165999.3701 132784.3986 143402.2295 0.807236934 0.88271262 0.747590545 0.869576103 0.887675923 1.094832056 1.063738356 1.157578726 0.9259577 1 17.12970793 -6.102208844 3.048918568 1.059430072 0.827058746 0.71291175 0.066903353 0.134977346 2.407442023 0.022551527 0.023038598 7.90E-07 6.102208844 -0.232371326 SSS(ph)VTSIDKESR ddPTM_HeLa_A486_30min_R1 1 SSSVTSIDKESR 12 1 Q5T5C0-2;Q5T5C0;H0Y332;Q5JRH0;Q5T5C0-3 Q5T5C0-2 STXBP5 Syntaxin-binding protein 5 1 0 S(0.037)S(0.139)S(0.813)VT(0.011)SIDKESR 158.89 6.79E-09 347000000 294330 230950 122970 104660 268290 230660 300210 303940 213570 351070 TRUE FALSE FALSE 273698.9869 212648.6809 170587.2773 243653.7692 234638.5665 202203.5144 225094.2827 234739.497 232082.4196 263159.7869 1.040048672 0.808059177 0.648226993 0.925877666 0.891620142 0.76836783 0.855352124 0.892003675 0.881906853 1 18.00557952 -8.266955595 0.935166157 0.999491773 0.841107711 0.170846347 0.09704509 1.707152248 2.898564607 0.095296689 0.031828296 5.41E-09 8.266955595 -0.158384062 SSS(ph)VVSAEMSGCSSK ddPTM_HeLa_A485_30min_R1 2 SSSVVSAEMSGCSSK 15 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 SS(0.02)S(0.98)VVSAEMSGCSSK;S(0.004)S(0.101)S(0.895)VVSAEMSGCSSK ; 182.35 8.85E-12 0 163858 146411 90210 173665 133888 165009 232694 288600 161706 508700 TRUE FALSE FALSE 200307.6468 163532.4928 123582.433 183151.8792 120557.6406 173648.6161 182977.026 217820.3975 194158.9109 381890.4519 0.524515986 0.428218333 0.323607025 0.479592716 0.315686449 0.454707928 0.479134854 0.570374034 0.508415201 1 18.54279932 -8.945999468 0.524556895 1.047874028 0.411007276 0.863054308 0.06702678 1.282606516 0.452328104 0.197916307 0.032137026 1.13E-09 8.945999468 -0.636866752 SSS(ph)VVSAEMSGCSSK ddPTM_HeLa_A486_30min_R1 2 SSSVVSAEMSGCSSK 15 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 SS(0.018)S(0.981)VVSAEMSGCSSK;S(0.018)S(0.057)S(0.925)VVSAEMSGCSSK ; 194 1.78E-18 166797000 578570 505540 275314 120774 422510 477040 487290 420420 450910 564780 TRUE FALSE FALSE 538015.2307 465479.1693 381922.954 281167.9756 369514.8561 418187.655 365364.888 324699.5437 489995.2419 423355.4119 1.270835841 1.099499749 0.902133156 0.664141683 0.872824217 0.987793337 0.863021654 0.766966796 1.157408712 1 18.69150981 -4.57366007 2.764650968 0.885054436 1.258260648 0.463731957 0.127375531 0.237420045 3.397559991 0.033753579 0.145284721 2.67E-05 4.57366007 0.373206212 SSSAS(ph)SPEMK ddPTM_HeLa_A486_30min_R1 2 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSSAS(0.64)S(0.36)PEMK;SSSAS(0.681)S(0.319)PEMK ; 183.99 1.25E-09 2190620000 3430690 3210080 1765560 1928010 3052460 4280500 5138800 4881300 2765820 5402400 TRUE FALSE FALSE 3190216.347 2955701.57 2449232.115 4488504.716 2669592.004 3752415.431 3853017.887 3769934.548 3005563.505 4049603.876 0.787784792 0.729874245 0.604807826 1.108381178 0.659222997 0.926612959 0.951455502 0.93093909 0.742187038 1 21.94934936 -5.237049614 24.98699469 0.892692821 0.709727495 0.333094132 0.126003919 940.5396045 963569.4537 0.032798995 0.056775463 5.79E-06 5.237049614 -0.182965326 SSSASS(ph)PEMK ddPTM_HeLa_A485_30min_R1 4 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSSAS(0.016)S(0.984)PEMK;SSSAS(0.02)S(0.98)PEMK;SSSAS(0.316)S(0.684)PEMK;SSSAS(0.044)S(0.956)PEMK ;;; 240.05 1.57E-29 3063600000 5204340 4365010 3202350 8298620 6497100 5013140 7929160 7033670 4611810 11069930 TRUE FALSE FALSE 6362027.478 4875459.949 4387032.526 8751952.597 5850225.911 5275620.259 6235030.191 5308651.404 5537357.965 8310400.178 0.765550075 0.586669696 0.527896663 1.05313251 0.703964404 0.634821446 0.750268345 0.638796122 0.666316645 1 22.98648652 -10.63677701 2.724631254 1.030477578 0.702288143 0.302416198 0.135298081 46095036 42382434.11 9897200.131 0.033898129 2.31E-11 10.63677701 -0.328189435 SSSASS(ph)PEMK ddPTM_HeLa_A486_30min_R1 5 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSSAS(0.017)S(0.983)PEMK;SSSAS(0.022)S(0.978)PEMK;SSSAS(0.015)S(0.985)PEMK;SSSAS(0.004)S(0.996)PEMK;SSSAS(0.005)S(0.995)PEMK ;;;; 215.71 8.05E-17 2085240000 5386300 5071480 2705570 2783220 4811150 6477950 7876900 7128430 4117820 7982930 TRUE FALSE FALSE 5008748.185 4669597.455 3753239.162 6479476.816 4207690.705 5678766.392 5906016.307 5505442.102 4474755.953 5983952.368 0.837030089 0.78035338 0.627217419 1.082808889 0.703162466 0.948999264 0.986975822 0.920034413 0.747792709 1 22.51266726 -5.248902074 24.99957167 0.905353867 0.751415621 0.289665463 0.117698808 1053.369959 2100431.769 0.031127906 0.053424659 5.64E-06 5.248902074 -0.153938246 SSSCESLGS(ph)QPAAARPPSVDSLSSASTSHSENSVHTK ddPTM_HeLa_A485_30min_R1 2 SSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 37 1 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 S(0.045)S(0.045)S(0.045)CES(0.152)LGS(0.645)QPAAARPPS(0.031)VDS(0.024)LS(0.005)S(0.006)AS(0.001)TSHSENSVHTK;S(0.052)S(0.052)S(0.052)CES(0.019)LGS(0.773)QPAAARPPS(0.028)VDS(0.009)LS(0.004)S(0.009)AS(0.001)TSHSENSVHTK ; 78.694 0.00032171 1046020000 73533 135348 121212 48405 186237 82248 122615 143008 107565 94668 TRUE FALSE FALSE 89890.16216 151175.7712 166053.3629 51049.24258 167694.5904 86554.3781 96417.30358 107935.0638 129152.3089 71069.00984 1.264829247 2.127168671 2.336508743 0.718305246 2.359602178 1.217891994 1.356671548 1.518736001 1.817280263 1 16.11693298 -5.812313588 0.91875365 1.440839414 1.823896407 0.068328493 0.519622047 1.733901259 3.174798278 0.256932811 0.388625355 1.54E-06 5.812313588 0.383056992 SSSCESLGS(ph)QPAAARPPSVDSLSSASTSHSENSVHTK ddPTM_HeLa_A486_30min_R1 1 SSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 37 1 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 S(0.012)S(0.012)S(0.011)CES(0.214)LGS(0.718)QPAAARPPS(0.023)VDS(0.007)LS(0.001)S(0.003)ASTSHSENSVHTK 96.108 4.43E-05 742920000 126850 150780 111230 15478 159940 72830 105660 108800 113440 30994 TRUE FALSE FALSE 117958.4701 138831.6437 154301.2348 36033.56621 139878.8338 63844.97508 79222.75044 84028.61509 123273.0705 23232.90066 5.077216649 5.975648314 6.641496776 1.550971475 6.0207219 2.748041495 3.409937984 3.616793973 5.305969854 1 14.50388167 -5.239878649 24.99545628 3.573033405 5.905873493 0.37637324 1.471234053 880.5546006 1020829.797 0.375669099 0.649906303 5.76E-06 5.239878649 2.332840088 SSSCESLGSQPAAARPPS(ph)VDSLSSASTSHSENSVHTK ddPTM_HeLa_A485_30min_R1 1 SSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 37 1 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 S(0.003)S(0.003)S(0.031)CES(0.01)LGS(0.008)QPAAARPPS(0.94)VDS(0.002)LS(0.002)S(0.001)AS(0.001)TSHSENSVHTK 95.252 4.34E-05 350080000 12347 23383 20516 10120 34314 17232 23888 26822 20105 17817 TRUE FALSE FALSE 15093.54755 26117.43844 28105.72214 10672.82997 30897.57768 18134.24087 18784.13365 20243.86244 24139.88909 13375.5498 1.128443151 1.952625413 2.101276027 0.797935796 2.31000431 1.355775362 1.404363479 1.513497595 1.804777333 1 13.70731057 -10.90467059 2.498373394 0.65092236 1.604163925 0.144485322 0.435103872 35686122.68 21240479.63 73295031.25 0.102705812 1.25E-11 10.90467059 0.953241565 SSSDPGIPGGPQAIPATNS(ph)PDHSDHTLSVSSDSGHSTASAR ddPTM_HeLa_A486_30min_R1 1 SSSDPGIPGGPQAIPATNSPDHSDHTLSVSSDSGHSTASAR 41 0 Q68CZ2;E9PCX8;C9JHU5 Q68CZ2 TNS3 Tensin-3 1 0 SSSDPGIPGGPQAIPAT(0.016)NS(0.975)PDHS(0.008)DHT(0.001)LSVSSDSGHSTASAR 167.29 7.45E-16 950490000 279580 312670 488320 20208 534210 176010 238700 227260 320660 37536 TRUE FALSE FALSE 259982.8858 287892.8905 677410.5817 47045.24526 467204.4005 154295.6757 178974.7353 175517.8591 348455.067 28136.74128 9.239978544 10.23192016 24.07565876 1.672021816 16.60478006 5.48377917 6.360890677 6.238030812 12.38434343 1 14.78016763 -6.283524096 24.69701495 6.625002921 12.30292697 0.207347857 5.917115821 1212.551651 1355973.995 2.015404844 1.778921435 5.21E-07 6.283524096 5.677924049 SSSFS(ph)DTLEESSPIAAIFDTENLEK ddPTM_HeLa_A486_30min_R1 1 SSSFSDTLEESSPIAAIFDTENLEK 25 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 S(0.085)S(0.085)S(0.085)FS(0.63)DT(0.115)LEESSPIAAIFDTENLEK 213.72 2.01E-29 170340000 12369 14803 8220.7 7081.2 12191 11289 19363 14882 7931.5 20767 TRUE FALSE FALSE 11501.99697 13629.95637 11403.9752 16485.39146 10661.8911 9896.277958 14518.1726 11493.69347 8619.008806 15566.80803 0.738879605 0.875578111 0.73258276 1.059009107 0.684911838 0.635729428 0.932636451 0.738346195 0.553678621 1 13.92618553 SSSHLPANSQDVQGYITNQS(ph)PESIVEEAQGK ddPTM_HeLa_A485_30min_R1 1 SSSHLPANSQDVQGYITNQSPESIVEEAQGK 31 0 H0YM23;O75179-7;O75179-2;O75179;O75179-4;H0YLQ3;A0A1W2PQ15;O75179-3 H0YM23 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 SSSHLPANSQDVQGYIT(0.012)NQS(0.938)PES(0.05)IVEEAQGK 90.518 0.00021735 67653000 23463 35726 31208 25696 55959 31529 40449 47227 35433 34460 TRUE FALSE FALSE 28682.2634 39903.84493 42753.13787 27099.70741 50387.52548 33179.80969 31806.74071 35644.5042 42544.07809 25869.75619 1.108717964 1.542490182 1.652630104 1.047543982 1.947738707 1.282571411 1.229495187 1.377844613 1.644548862 1 14.65897884 -10.3124308 6.245105925 0.999978205 1.428854624 0.191210018 0.262751494 7.62E-05 8.39E-06 0.243127257 0.058964031 4.87E-11 10.3124308 0.428876419 SSSISEEKGDS(ph)DDEKPR ddPTM_HeLa_A485_30min_R1 8 SSSISEEKGDSDDEKPR 17 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR ;;;;;;; 286.05 2.33E-60 44027060000 6360455 3868503 2383798 15831780 6352281 5437141 12663590 10178380 3796664 20564970 TRUE FALSE FALSE 7775316.271 4320890.774 3265664.078 16696630.05 5719825.599 5721821.295 9957910.544 7682116.346 4558619.64 15438501.45 0.503631541 0.279877603 0.211527271 1.081492923 0.370490984 0.370620252 0.645004995 0.49759469 0.295276044 1 23.88002939 -11.03523172 2.512724594 1.641090472 0.477151694 0.308671168 0.236600881 52447888.55 18168275.54 193593621.2 0.060127093 9.22E-12 11.03523172 -1.163938778 SSSISEEKGDS(ph)DDEKPR ddPTM_HeLa_A486_30min_R1 9 SSSISEEKGDSDDEKPR 17 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SSSISEEKGDS(1)DDEKPR;S(0.026)S(0.026)S(0.026)IS(0.162)EEKGDS(0.761)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSIS(0.001)EEKGDS(0.999)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR;SSSISEEKGDS(1)DDEKPR ;;;;;;;; 263.32 4.59E-52 24259610000 4449310 3649028 1263609 5276440 2811530 5533260 9067530 7251760 2938403 13210600 TRUE FALSE FALSE 4137436.345 3359865.732 1752912.245 12283818.98 2458881.691 4850622.639 6798738.087 5600692.553 3193106.138 9902579.773 0.417813988 0.339291963 0.177015716 1.240466551 0.248307183 0.48983424 0.686562314 0.56557914 0.322451948 1 23.23937299 -11.64569514 1.952356699 9.999798544 0.506147786 0.215925374 0.286316172 7028798.004 258310.1601 280992327.6 0.075735593 2.26E-12 11.64569514 -9.493650758 SSSLDALDADS(ph)EGEGHSEPSHICYTPGSQSSSR ddPTM_HeLa_A485_30min_R1 2 SSSLDALDADSEGEGHSEPSHICYTPGSQSSSR 33 0 Q8N1W1-2;Q8N1W1-5;Q8N1W1-4;Q8N1W1-3;Q8N1W1;Q8N1W1-6 Q8N1W1-2 ARHGEF28 Rho guanine nucleotide exchange factor 28 1 0 SSSLDALDADS(0.999)EGEGHSEPS(0.001)HICYTPGSQSSSR;SSSLDALDADS(1)EGEGHSEPSHICYTPGSQSSSR ; 158.23 1.61E-10 231060000 94034 116982 121241 106537 172099 101887 155268 146556 109684 183396 TRUE FALSE FALSE 114951.5389 130662.0273 166093.0912 112356.8465 154964.2193 107221.6458 122093.7234 110612.9112 131696.5727 137678.7524 0.834925774 0.949035527 1.206381437 0.816079784 1.125549271 0.778781358 0.886801495 0.803413085 0.956549725 1 17.0709464 -6.275682662 24.98940287 0.872928233 0.987078461 0.136051804 0.125751531 1476.447075 2590373.147 0.042596601 0.037747153 5.30E-07 6.275682662 0.114150228 SSSLDALDADS(ph)EGEGHSEPSHICYTPGSQSSSR ddPTM_HeLa_A486_30min_R1 2 SSSLDALDADSEGEGHSEPSHICYTPGSQSSSR 33 0 Q8N1W1-2;Q8N1W1-5;Q8N1W1-4;Q8N1W1-3;Q8N1W1;Q8N1W1-6 Q8N1W1-2 ARHGEF28 Rho guanine nucleotide exchange factor 28 1 0 SSSLDALDADS(0.932)EGEGHS(0.028)EPS(0.04)HICYTPGSQSSSR;SSSLDALDADS(1)EGEGHSEPSHICYTPGSQSSSR ; 209.92 1.09E-29 333700000 353755 223253 84189 92282 155264 366106 612434 504724 185569 1040429 TRUE FALSE FALSE 328958.6013 205561.6192 116789.2355 214837.1597 135789.3413 320939.564 459196.5355 389809.3632 201654.2703 779898.8063 0.421796518 0.263574732 0.149749217 0.275467994 0.174111488 0.411514368 0.588789894 0.499820438 0.258564661 1 19.57292742 -14 0.183297232 3.796538197 0.204448268 0.71347264 0.128222257 75.28970583 0.728769819 76.44119754 0.4082143 1.00E-14 14 -3.59208993 SSSLDALDADSEGEGHSEPS(ph)HICYTPGSQSSSR ddPTM_HeLa_A485_30min_R1 1 SSSLDALDADSEGEGHSEPSHICYTPGSQSSSR 33 0 Q8N1W1-2;Q8N1W1-5;Q8N1W1-4;Q8N1W1-3;Q8N1W1;Q8N1W1-6 Q8N1W1-2 ARHGEF28 Rho guanine nucleotide exchange factor 28 1 0 S(0.001)S(0.001)S(0.001)LDALDADS(0.121)EGEGHS(0.13)EPS(0.748)HICYTPGSQSSSR 73.303 0.00074089 265570000 126980 61605 58949 253290 121960 58613 244370 150250 69809 943250 TRUE FALSE FALSE 155226.2629 68809.16886 80756.68817 267126.5913 109817.2342 61681.88605 192158.3532 113400.9519 83819.02597 708115.1342 0.219210486 0.09717229 0.114044573 0.3772361 0.155083868 0.087107143 0.271365974 0.160144793 0.118369206 1 19.43362443 -10.6875038 2.99868974 1.094978779 0.178275236 0.892361005 0.085672153 79913273.86 78777884.1 57792588.41 0.02238322 2.05E-11 10.6875038 -0.916703543 SSSLEMTPYNTPQLS(ph)PATTPANKK ddPTM_HeLa_A485_30min_R1 3 SSSLEMTPYNTPQLSPATTPANKK 24 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7;B4DGD8;A0A0A0MQV8;B0QZ65 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 SSSLEMTPYNTPQLS(0.998)PAT(0.001)TPANKK;SSSLEMTPYNT(0.001)PQLS(0.997)PAT(0.001)TPANKK;SSSLEMT(0.001)PY(0.006)NT(0.043)PQLS(0.854)PAT(0.066)T(0.029)PANKK ;; 188.44 6.82E-21 1194880000 1065680 976311 619293 1214870 1264180 1124004 1749110 1934180 923011 1695030 TRUE FALSE FALSE 1302736.839 1090482.079 848395.2516 1281235.272 1138313.8 1182855.111 1375398.36 1459819.322 1108250.841 1272490.216 1.023769632 0.856966965 0.666720452 1.006872396 0.894556034 0.929559298 1.080871462 1.147214575 0.870930737 1 20.27922313 -6.597847585 4.439700705 1.036301034 0.884255213 0.240901037 0.11218429 0.291064727 10.95914264 0.04492077 0.034474353 2.52E-07 6.597847585 -0.152045821 SSSLEMTPYNTPQLS(ph)PATTPANKK ddPTM_HeLa_A486_30min_R1 3 SSSLEMTPYNTPQLSPATTPANKK 24 1 Q14C86-3;Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;H0Y7I9;C9IZ08;F8W9S7;Q14C86-4;H0Y4E7;B4DGD8;A0A0A0MQV8;B0QZ65 Q14C86-3 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 SSSLEMTPYNTPQLS(1)PATTPANKK;SSSLEMTPYNTPQLS(1)PATTPANKK;SSSLEMTPYNTPQLS(0.962)PAT(0.019)T(0.019)PANKK ;; 273 4.26E-75 2459890000 1692410 1543292 756609 611375 1608098 1833213 2235060 2092520 1272666 2384260 TRUE FALSE FALSE 1573780.799 1420995.921 1049588.267 1423311.897 1406395.354 1607049.819 1675824.348 1616098.875 1382981.714 1787225.777 0.8805719 0.795084728 0.587272342 0.796380578 0.786915325 0.899186795 0.93766796 0.904249981 0.773814776 1 20.76929047 -6.15627751 2.803808251 0.900252501 0.75615506 0.374763453 0.086349644 0.315229787 4.808236226 0.031936358 0.0316926 6.98E-07 6.15627751 -0.144097441 SSSLGNS(ph)PERGPLRPFVPEQELLR ddPTM_HeLa_A485_30min_R1 2 SSSLGNSPERGPLRPFVPEQELLR 24 2 Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3;Q5SQI0-2;Q5SQI0 Q5SQI0-7 ATAT1 Alpha-tubulin N-acetyltransferase 1 1 0 SSSLGNS(1)PERGPLRPFVPEQELLR;S(0.01)S(0.05)S(0.037)LGNS(0.903)PERGPLRPFVPEQELLR ; 166.28 2.13E-14 231120000 64981 108682 86256 76228 121189 116240 149438 173367 79493 109156 TRUE FALSE FALSE 79435.79927 121391.4145 118165.6838 80392.14262 109122.9976 122326.1467 117509.3505 130848.4714 95446.51595 81945.41807 0.969374507 1.481369152 1.442004771 0.981044999 1.331654658 1.492775918 1.433995375 1.596775933 1.164757203 1 16.32237566 -5.990619363 24.9808834 1.384450876 1.241090888 0.039906488 0.222461767 546.1284928 1454343.389 0.067653229 0.076620987 1.02E-06 5.990619363 -0.143359988 SSSLGNS(ph)PERGPLRPFVPEQELLR ddPTM_HeLa_A486_30min_R1 1 SSSLGNSPERGPLRPFVPEQELLR 24 2 Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3;Q5SQI0-2;Q5SQI0 Q5SQI0-7 ATAT1 Alpha-tubulin N-acetyltransferase 1 1 0 S(0.114)S(0.022)S(0.02)LGNS(0.844)PERGPLRPFVPEQELLR 73.317 0.0035846 79573000 39330 39157 34305 20095 63594 53126 46236 46296 33833 50594 TRUE FALSE FALSE 36573.1701 36054.05671 47588.81472 46782.17555 55617.44753 46571.85427 34667.26377 35755.41143 36765.67168 37924.93309 0.964356879 0.95066896 1.25481605 1.233546686 1.466514058 1.228000961 0.914102173 0.942794318 0.969432737 1 15.21085901 -6.761354015 24.99999971 0.951815138 1.190875314 0.384225159 0.140146292 2.702449685 791762.4077 0.063737024 0.046171775 1.73E-07 6.761354015 0.239060176 SSSLIQLTSQNS(ph)SPNQQR ddPTM_HeLa_A485_30min_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 SSSLIQLTSQNS(0.5)S(0.5)PNQQR 229.48 7.34E-35 149990000 56246 73326 64939 63651 84027 61655 91251 92071 54343 84784 TRUE FALSE FALSE 68757.72865 81900.83785 88962.63844 67128.09296 75660.97684 64883.16046 71754.4784 69490.44289 65249.14164 63648.90913 1.080265626 1.28675949 1.397708769 1.054662112 1.188723858 1.019391555 1.127348125 1.091777437 1.025141554 1 15.95784817 -5.287936986 24.81117548 1.081182273 1.25809614 0.464382981 0.089441743 585.5768073 548306.6793 0.024989743 0.03707838 5.15E-06 5.287936986 0.176913867 SSSLIQLTSQNSS(ph)PNQQR ddPTM_HeLa_A485_30min_R1 2 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 SSSLIQLTSQNS(0.384)S(0.616)PNQQR;SSSLIQLTSQNS(0.079)S(0.921)PNQQR ; 254.53 1.18E-57 166250000 212105 275100 260520 228617 320570 237110 317730 344160 230426 311450 TRUE FALSE FALSE 259287.0255 307270.5519 356897.1891 241105.7678 288652.9252 249524.713 249844.3899 259754.2204 276670.3846 233811.2468 1.108958739 1.314182085 1.526432941 1.031198332 1.234555348 1.067205775 1.068573019 1.11095691 1.18330657 1 17.8349848 -5.287893991 24.99537719 1.107028284 1.316290417 0.432216704 0.113805815 694.8506262 656521.1764 0.031960427 0.047421008 5.15E-06 5.287893991 0.209262134 SSSLIQLTSQNSS(ph)PNQQR ddPTM_HeLa_A486_30min_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 SSSLIQLTSQNS(0.02)S(0.98)PNQQR 204.23 2.63E-25 155950000 157440 168260 129250 47737 164270 143480 152710 171310 130010 154820 TRUE FALSE FALSE 146404.269 154926.4648 179299.0614 111134.1485 143665.7248 125778.8964 114500.3428 132306.4527 141279.3715 116052.0643 1.261539551 1.334973796 1.544988127 0.957623194 1.237942002 1.083814383 0.986629092 1.140061174 1.21737922 1 16.82441266 -5.265191211 24.99970446 1.096616411 1.375947821 0.595779895 0.109864358 226.5974505 1509897.176 0.030503161 0.04728035 5.43E-06 5.265191211 0.27933141 SSSMS(ph)YVDGFIGTWPK ddPTM_HeLa_A485_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.218)S(0.218)S(0.218)MS(0.347)YVDGFIGTWPK 168.67 4.40E-12 562450000 127910 129790 118470 149060 176130 143340 200520 189740 157190 223090 TRUE FALSE FALSE 156363.1382 144967.8115 162296.9829 157202.7704 158593.8788 150845.0608 157677.2639 143205.9675 188736.5912 167477.7687 0.933635189 0.865594357 0.96906583 0.938648584 0.946954811 0.90068707 0.941481757 0.855074489 1.126935191 1 17.35361008 -7.761922261 24.99999914 1.063467603 0.920528621 0.628615614 0.044435761 7.607628498 393671.2847 0.033095294 0.010533869 1.73E-08 7.761922261 -0.142938982 SSSMS(ph)YVDGFIGTWPK ddPTM_HeLa_A486_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.013)S(0.013)S(0.104)MS(0.87)YVDGFIGTWPK 275.42 1.67E-58 552030000 483240 503610 324160 212960 468970 603920 640840 713600 471410 626990 TRUE FALSE FALSE 449367.3715 463702.1095 449683.4333 495781.6424 410147.4096 529414.4906 480495.0539 551128.8578 512272.1984 469987.623 0.956125969 0.986626215 0.956798459 1.054882338 0.872677044 1.126443474 1.022356825 1.172645472 1.089969551 1 18.84226324 -6.281390011 24.99872713 1.08932802 0.971090941 0.469205079 0.061774004 708.5399144 887818.5945 0.020558379 0.018154516 5.23E-07 6.281390011 -0.118237079 SSSMSYVDGFIGT(ph)WPK ddPTM_HeLa_A485_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SSSMSYVDGFIGT(1)WPK 166.9 2.51E-11 73176000 130800 103040 69588 148330 150320 140090 196760 184180 96093 213810 TRUE FALSE FALSE 159896.0087 115089.6317 95331.497 156432.8923 135353.613 147424.8958 154720.6186 139009.5662 115377.9837 160511.1019 0.996167909 0.71701976 0.593924631 0.974592352 0.843266362 0.918471645 0.963924718 0.866043312 0.718816221 1 17.29231356 -5.290591352 24.99833934 0.893627072 0.763835541 0.195789621 0.119300162 1118.146153 958828.0163 0.03380743 0.050153551 5.12E-06 5.290591352 -0.12979153 SSSMSYVDGFIGT(ph)WPK ddPTM_HeLa_A486_30min_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SSSMSYVDGFIGT(1)WPK 145.69 3.65E-07 96920000 140380 141940 87915 89995 143710 176620 227200 219560 142700 221300 TRUE FALSE FALSE 130540.0869 130692.1575 121958.0424 209512.9081 125684.5518 154830.4201 170352.1569 169570.981 155069.3509 165885.0396 0.786931041 0.787847764 0.73519615 1.263000622 0.757660559 0.933359756 1.026928995 1.022219854 0.934800096 1 17.33982426 SSSPAGET(ph)EGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_A485_30min_R1 1 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.184)S(0.184)S(0.184)PAGET(0.447)EGDREPQARPGEGTAPLPPPGQK 161.35 1.51E-13 1147700000 61189 80297 60760 67677 90760 88508 123490 123630 74396 106610 TRUE FALSE FALSE 74800.28195 89687.03566 83237.65243 71374.02314 81723.61572 93142.14202 97105.35268 93309.54866 89326.5948 80034.08901 0.934605277 1.120610439 1.040027487 0.891795284 1.021110089 1.163780874 1.213299906 1.165872565 1.116106848 1 16.288327 -6.220371956 6.050421689 1.147323012 1.003401774 0.406986662 0.07753621 0.19770248 20.05870193 0.026134704 0.02578207 6.02E-07 6.220371956 -0.143921238 SSSPLPTVQLHPQS(ph)PTAGK ddPTM_HeLa_A485_30min_R1 3 SSSPLPTVQLHPQSPTAGK 19 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SSSPLPTVQLHPQS(0.976)PT(0.024)AGK;SSSPLPTVQLHPQS(0.998)PT(0.002)AGK;SSSPLPTVQLHPQS(1)PTAGK ;; 177.22 1.36E-13 1327580000 1307710 1067670 576428 1845130 813998 1199700 1840130 1523570 1031704 3641600 TRUE FALSE FALSE 1598605.578 1192524.719 789672.7044 1945924.78 732953.501 1262514.437 1446971.193 1149912.069 1238757.529 2733816.139 0.584752411 0.43621248 0.288853626 0.711797971 0.268106363 0.461813953 0.529286214 0.42062524 0.453123936 1 21.38248479 -10.33264682 3.030085329 1.005140759 0.458247421 0.631560472 0.123339256 16766151.13 21493292.41 772231.9635 0.029535766 4.65E-11 10.33264682 -0.546893338 SSSPLPTVQLHPQS(ph)PTAGK ddPTM_HeLa_A486_30min_R1 2 SSSPLPTVQLHPQSPTAGK 19 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SSSPLPTVQLHPQS(1)PTAGK;SSSPLPTVQLHPQS(1)PTAGK ; 187.79 2.01E-18 818630000 921500 824820 494810 228110 989200 1147490 999090 926720 1179020 1733120 TRUE FALSE FALSE 856907.6086 759458.2593 686413.6835 531051.608 865125.3121 1005924.351 749107.1147 715726.0862 1281218.403 1299135.471 0.659598346 0.584587425 0.528361898 0.40877308 0.665923863 0.774302891 0.576619707 0.550924905 0.986208468 1 20.30912045 -7.765699638 24.99979993 0.993104539 0.592861493 0.754782695 0.091075626 57.80842086 339206.2753 0.085057651 0.025001547 1.72E-08 7.765699638 -0.400243046 SSSPLPTVQLHPQS(ph)PTAGKK ddPTM_HeLa_A485_30min_R1 1 SSSPLPTVQLHPQSPTAGKK 20 1 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SSSPLPTVQLHPQS(0.991)PT(0.009)AGKK 156.2 4.46E-10 2238200000 486510 443940 193800 639730 400030 500080 851250 666760 298380 1407100 TRUE FALSE FALSE 594732.4711 495854.9212 265494.6847 674676.83 360201.6086 526263.4155 669373.4834 503236.0646 358262.1291 1056335.866 0.563014558 0.469410286 0.251335483 0.638695373 0.340991554 0.498197053 0.633674861 0.476397783 0.33915551 1 20.01063719 -10.89854071 2.521018968 1.29471612 0.468862344 0.635312302 0.120946856 25925508.62 13988396.52 45317189 0.030522537 1.26E-11 10.89854071 -0.825853776 SSSPLPTVQLHPQS(ph)PTAGKK ddPTM_HeLa_A486_30min_R1 3 SSSPLPTVQLHPQSPTAGKK 20 1 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SSSPLPTVQLHPQS(0.5)PT(0.5)AGKK;SSSPLPTVQLHPQS(0.96)PT(0.04)AGKK;SSSPLPTVQLHPQS(0.971)PT(0.029)AGKK ;; 174.4 5.71E-14 4094560000 3174890 2331710 1060870 836912 2764430 3221720 3277260 3303390 2792560 5266890 TRUE FALSE FALSE 2952346.606 2146936.808 1471667.275 1948373.431 2417689.412 2824256.942 2457254.885 2551280.209 3034621.349 3948026.462 0.747803145 0.543800004 0.372760236 0.493505667 0.612379232 0.715359172 0.622400814 0.646216593 0.768642606 1 21.91270023 -8.232761241 0.4711884 1.021102112 0.539175878 0.641122175 0.097554278 0.968794796 0.482900647 0.151889632 0.063772255 5.85E-09 8.232761241 -0.481926234 SSSPNS(ph)PLPMFR ddPTM_HeLa_A485_30min_R1 4 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 SSS(0.016)PNS(0.984)PLPMFR;SS(0.001)S(0.021)PNS(0.978)PLPMFR;S(0.004)S(0.002)S(0.008)PNS(0.986)PLPMFR;SSS(0.003)PNS(0.997)PLPMFR ;;; 116.58 0.00023636 528712000 433898 789881 775083 324595 693005 652399 604440 633506 638590 410280 TRUE FALSE FALSE 530417.1132 882250.7119 1061818.456 342326.8029 624006.9889 686557.6028 475296.4562 478137.6602 766749.1555 308004.7466 1.722106945 2.864406219 3.44740939 1.11143353 2.025965495 2.229048774 1.543146531 1.552371077 2.489406945 1 18.23259306 -5.265295762 24.99984543 1.758527054 2.696617377 0.362078467 0.587502757 365.0700858 2366649.407 0.161897362 0.250669139 5.43E-06 5.265295762 0.938090323 SSSPNS(ph)PLPMFR ddPTM_HeLa_A486_30min_R1 2 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 SSS(0.005)PNS(0.995)PLPMFR;SSSPNS(1)PLPMFR ; 130.66 2.84E-05 460110000 316290 361440 454670 79061 481780 261460 258570 278170 374100 220972 TRUE FALSE FALSE 294119.7043 332798.1781 630730.4005 184058.0035 421350.66 229203.7235 193873.0511 214836.7634 406527.2892 165639.1729 1.775665135 2.00917556 3.807857703 1.111198518 2.543786307 1.383753127 1.170454112 1.297016639 2.454294368 1 17.33768438 -6.028961174 1.501376367 1.471134359 2.347381066 0.193213158 0.749541744 0.659085359 3.028152749 0.304429475 0.331776356 9.35E-07 6.028961174 0.876246707 SSSQLGS(ph)PDVSHLIR ddPTM_HeLa_A485_30min_R1 3 SSSQLGSPDVSHLIR 15 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 SSSQLGS(1)PDVSHLIR;SSSQLGS(1)PDVSHLIR;SSSQLGS(0.999)PDVSHLIR ;; 163.91 4.41E-12 679310000 307283 412450 369610 265856 500360 374010 441570 513790 368933 415960 TRUE FALSE FALSE 375637.0432 460682.4397 506344.1198 280379.0401 450542.4015 393592.5853 347224.9622 387782.1969 442974.469 312268.8272 1.202928408 1.475275146 1.621500693 0.897877136 1.442803003 1.260428679 1.111942442 1.241821671 1.418567691 1 18.25242903 -14 0.116080537 0.110712121 1.440368231 0.162966071 0.196072516 293.8960898 2.230640535 62.70118706 2.103116309 1.00E-14 14 1.329656109 SSSQLGS(ph)PDVSHLIR ddPTM_HeLa_A486_30min_R1 3 SSSQLGSPDVSHLIR 15 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 S(0.007)S(0.007)S(0.006)QLGS(0.979)PDVS(0.001)HLIR;SSSQLGS(1)PDVSHLIR;SSSQLGS(1)PDVSHLIR ;; 139.83 2.03E-06 573420000 375023 395610 269565 106981 411440 372918 387356 378823 333069 480940 TRUE FALSE FALSE 348735.8243 364260.4228 373947.7872 249057.1745 359833.3587 326911.1687 290435.4318 292573.2725 361939.6891 360509.4936 0.967341583 1.010404523 1.037275838 0.690847756 0.998124502 0.906803217 0.80562492 0.811554974 1.003967151 1 18.45967773 SSSQPS(ph)SCCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_A486_30min_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.014)S(0.014)S(0.054)QPS(0.89)S(0.019)CCS(0.007)DPS(0.002)KPGGNVEGATQSLAEQMR 168.94 8.31E-15 1367600000 726090 838090 417510 338990 704330 773370 983420 858200 604380 890130 TRUE FALSE FALSE 675194.8405 771676.6961 579181.0533 789185.8516 615986.3638 677959.4725 737357.9144 662806.5944 656768.145 667235.6542 1.011928599 1.156527969 0.868030732 1.182769306 0.923191619 1.01607201 1.105093695 0.993362076 0.984312126 1 19.34783686 -1.000000462 0.128925726 0.987621946 1.202799509 0.020613684 0.092378752 421.8121457 3.694456791 0.486488725 16.47745378 0.099999894 1.000000462 0.215177563 SSSQRSPS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_HeLa_A486_30min_R1 2 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 S(0.174)S(0.174)S(0.174)QRS(0.174)PS(0.28)PGPNHT(0.01)S(0.01)NS(0.002)S(0.002)NASNATVVPQNSSAR;S(0.173)S(0.173)S(0.173)QRS(0.173)PS(0.309)PGPNHTSNSSNASNATVVPQNSSAR ; 115.27 3.15E-05 96519000 31530 38584 62904 3558.6 91218 24590 32723 42593 36166 10047 TRUE FALSE FALSE 29319.90982 35526.46332 87262.11343 8284.600642 79776.58787 21556.33581 24535.35929 32895.5037 39300.898 7531.165805 3.893143582 4.717259484 11.5868002 1.100042259 10.59286038 2.862284057 3.257843464 4.367916542 5.218434837 1 12.87865749 SSSQSTFHIPLS(ph)PVEVKPGNVR ddPTM_HeLa_A485_30min_R1 2 SSSQSTFHIPLSPVEVKPGNVR 22 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 SSSQSTFHIPLS(0.999)PVEVKPGNVR;SSSQSTFHIPLS(1)PVEVKPGNVR ; 72.035 0.0038335 544750000 370660 468590 365430 204892 582500 372080 507560 514910 345790 396950 TRUE FALSE FALSE 453112.0382 523387.5243 500617.7638 216084.7311 524504.2547 391561.5335 399115.6596 388627.5152 415186.8812 297997.6703 1.520522082 1.756347705 1.679938515 0.725122216 1.760095152 1.31397515 1.339324764 1.304129374 1.39325546 1 18.18494153 -1 0.057393454 0.469645007 3.243879064 0.225382796 0.275666241 590.726507 2.545860837 25.94607554 138.8066589 0.1 1 2.774234058 SSSQSTFHIPLS(ph)PVEVKPGNVR ddPTM_HeLa_A486_30min_R1 1 SSSQSTFHIPLSPVEVKPGNVR 22 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 SSSQSTFHIPLS(1)PVEVKPGNVR 66.925 0.0052163 283930000 254610 201120 152630 23989 248550 178520 223690 218140 190470 131070 TRUE FALSE FALSE 236763.1538 185182.5187 211732.4236 55847.60434 217374.5414 156496.0175 167720.396 168474.284 206980.093 98249.21888 2.409822251 1.884824336 2.155054524 0.568427973 2.212481115 1.592847447 1.707091394 1.714764615 2.106684362 1 16.58415832 -1.000000002 0.041248942 1.98E-10 4.62488155 0.176311175 0.492346981 1562.353867 4.913354737 148.1924406 498.5353886 0.1 1.000000002 4.62488155 SSSS(ph)PELQTLQDILGDPGDKADVGR ddPTM_HeLa_A485_30min_R1 1 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 S(0.054)S(0.054)S(0.258)S(0.632)PELQT(0.003)LQDILGDPGDKADVGR 119.43 4.94E-05 209660000 107380 102410 74030 125950 133620 108350 166620 177660 85156 162320 TRUE FALSE FALSE 131266.3105 114385.9587 101416.7776 132830.3296 120316.3236 114023.0385 131020.2758 134088.6064 102246.0281 121856.6113 1.07721944 0.938693087 0.832263236 1.090054353 0.987359835 0.935714831 1.075200389 1.100380234 0.839068369 1 16.894825 -5.283771602 24.99820552 1.007582877 0.948321984 0.068180064 0.091755415 2109.889522 2361759.094 0.025813657 0.038316918 5.20E-06 5.283771602 -0.059260894 SSSS(ph)PLVVVSVK ddPTM_HeLa_A485_30min_R1 1 SSSSPLVVVSVK 12 0 Q96B01-3;Q96B01-2;Q96B01 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 S(0.005)S(0.005)S(0.033)S(0.957)PLVVVSVK 132.5 2.35E-05 86153000 305330 271300 222020 384030 389850 322480 380110 405050 265930 433110 TRUE FALSE FALSE 373249.6051 303026.175 304154.437 405008.5865 351035.1652 339364.5542 298896.3933 305710.8524 319299.7117 325143.6478 1.147952936 0.931976304 0.935446345 1.245629706 1.079631011 1.043737303 0.919274897 0.9402332 0.982026602 1 18.31071771 -6.654040906 5.770710741 0.955871089 1.062768673 0.248414448 0.088657386 0.329587125 15.59163265 0.036405812 0.027895758 2.22E-07 6.654040906 0.106897584 SSSS(ph)PLVVVSVK ddPTM_HeLa_A486_30min_R1 2 SSSSPLVVVSVK 12 0 Q96B01-3;Q96B01-2;Q96B01 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 SSS(0.078)S(0.922)PLVVVSVK;S(0.001)S(0.002)S(0.036)S(0.961)PLVVVSVK ; 207.12 2.71E-17 242160000 466240 499950 266140 247882 454040 482400 522240 501000 345170 578710 TRUE FALSE FALSE 433558.9837 460332.1412 369196.5355 577081.8233 397090.0694 422886.3927 391570.0283 386933.2368 375089.6135 433797.2492 0.999450744 1.06116888 0.851080859 1.330303095 0.915381714 0.974848027 0.90265678 0.891967935 0.864665726 1 18.72666138 -5.904894928 21.02511609 0.920781573 1.055246269 0.246661186 0.11577555 7.207190095 1583.507366 0.034914767 0.039589729 1.24E-06 5.904894928 0.134464696 SSSS(ph)SQESLNRPFSSK ddPTM_HeLa_A486_30min_R1 2 SSSSSQESLNRPFSSK 16 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.001)S(0.001)S(0.064)S(0.467)S(0.467)QES(0.001)LNRPFSSK;S(0.002)S(0.002)S(0.009)S(0.494)S(0.494)QESLNRPFSSK ; 104.63 0.00013175 465110000 361540 366800 256089 122452 393330 389020 376770 409320 305050 432190 TRUE FALSE FALSE 336197.913 337733.4321 355253.5191 285074.4444 343994.8837 341026.6677 282498.1609 316126.7714 331491.9796 323966.8109 1.037754182 1.042493925 1.096573807 0.879949534 1.061821372 1.052659273 0.871997228 0.975799868 1.023228209 1 18.3054865 -5.220795201 24.99825422 0.981610073 1.057295962 0.251815143 0.061708548 776.2703778 477445.1392 0.016970291 0.029392973 6.01E-06 5.220795201 0.075685888 SSSSAS(ph)DGESEGKR ddPTM_HeLa_A485_30min_R1 1 SSSSASDGESEGKR 14 1 K7EJD2;A0A0A0MR03;Q9Y5B0;A0A0J9YWJ4;A0A0J9YWB6;Q9Y5B0-4 K7EJD2;Q9Y5B0-4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 S(0.026)S(0.162)S(0.162)S(0.021)AS(0.629)DGESEGKR 62.304 0.014202 205860000 174220 169240 103010 289710 147080 171980 263450 250930 151180 357850 TRUE FALSE FALSE 212974.6379 189031.1458 141117.6856 305536.1237 132436.1988 180984.6069 207161.7553 189389.0241 181520.4393 268644.5807 0.792774741 0.703647717 0.525295114 1.137324724 0.492979231 0.673695358 0.771136923 0.704979879 0.675689935 1 18.03533921 -10.87721058 2.636978208 1.133320881 0.718871464 0.203830756 0.166170357 27904219.52 17240895.26 23241251.68 0.041768521 1.33E-11 10.87721058 -0.414449416 SSSSPELQTLQDILGDPGDKADVGRLS(ph)PEVK ddPTM_HeLa_A485_30min_R1 1 SSSSPELQTLQDILGDPGDKADVGRLSPEVK 31 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 SSSSPELQTLQDILGDPGDKADVGRLS(1)PEVK 199.99 2.54E-29 112770000 61845 45680 26780 105820 67199 62554 123260 107730 36962 162150 TRUE FALSE FALSE 75602.20689 51021.87864 36687.03641 111600.6786 60508.43161 65829.23071 96924.49406 81309.04859 44379.93436 121728.9891 0.621069865 0.419143205 0.301382905 0.916796233 0.497074953 0.540785159 0.796231816 0.667951399 0.364579832 1 16.89331325 -14 0.262644577 3.728848028 0.542152521 0.320115286 0.18322285 248.0075176 2.433709483 366.6075322 0.242995081 1.00E-14 14 -3.186695508 SSSSPELQTLQDILGDPGDKADVGRLS(ph)PEVK ddPTM_HeLa_A486_30min_R1 3 SSSSPELQTLQDILGDPGDKADVGRLSPEVK 31 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815;H3BQK4;A0A2R8Y670 P49815-5 TSC2 Tuberin 1 0 SSSSPELQTLQDILGDPGDKADVGRLS(1)PEVK;SSSSPELQTLQDILGDPGDKADVGRLS(1)PEVK;SSSSPELQTLQDILGDPGDKADVGRLS(1)PEVK ;; 203.88 1.90E-29 379380000 239642 182273 74911.3 150816 169512 250204 360781 313045 151226 423358 TRUE FALSE FALSE 222844.3333 167829.0237 103918.9616 351107.2698 148250.2243 219336.3744 270509.7778 241771.4872 164334.3914 317346.4012 0.702211629 0.528851195 0.327462234 1.106384911 0.467155839 0.691157592 0.852411676 0.761853565 0.517839152 1 18.27569896 -14 0.128246979 2.048693575 0.528638039 0.184735686 0.209345567 251.8746531 2.044939379 68.90136701 1.647807068 1.00E-14 14 -1.520055536 SSSSPGGS(ph)LDLVSALEDYEEPFPVYQK ddPTM_HeLa_A486_30min_R1 1 SSSSPGGSLDLVSALEDYEEPFPVYQK 27 0 A0A1W2PR91;A0A1W2PQT1;C9J366;P0DPB3-2;P0DPB3;B3KU38-2;B3KU38;A0A1W2PPY3 A0A1W2PR91 IQCJ-SCHIP1 1 0 S(0.192)S(0.192)S(0.192)S(0.192)PGGS(0.233)LDLVSALEDYEEPFPVYQK 128.98 4.96E-15 0 10493 8767.7 7710.5 3591.4 11455 12874 14343 11979 11116 13137 TRUE FALSE FALSE 9757.494886 8072.915521 10696.21209 8360.960699 10018.20709 11285.73677 10754.2297 9251.6432 12079.54383 9847.409692 0.990869192 0.819800919 1.0861955 0.849051777 1.017344398 1.146061464 1.092087161 0.939500182 1.226672212 1 13.26552857 -5.99516582 23.64993537 1.078219802 0.938134002 0.318922564 0.099416272 82.08853578 401586.0204 0.02915283 0.03291477 1.01E-06 5.99516582 -0.1400858 SSSSS(ph)QESLNRPFSSK ddPTM_HeLa_A485_30min_R1 6 SSSSSQESLNRPFSSK 16 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 SSSS(0.021)S(0.979)QESLNRPFSSK;SSS(0.001)S(0.12)S(0.88)QESLNRPFSSK;SSS(0.002)S(0.018)S(0.979)QESLNRPFSSK;SSSS(0.003)S(0.996)QESLNRPFSSK;SSSS(0.002)S(0.994)QES(0.004)LNRPFSSK;S(0.003)S(0.003)S(0.017)S(0.163)S(0.814)QES(0.001)LNRPFSSK ;;;;; 228.32 5.14E-33 6750550000 1762032 1924700 1513915 2006950 2320500 2165030 2686120 3004990 1736267 2694830 TRUE FALSE FALSE 2153989.939 2149776.922 2073975.158 2116584.597 2089462.872 2278387.623 2112208.518 2268011.491 2084719.861 2023058.476 1.064719565 1.062637066 1.025168171 1.046230063 1.032823765 1.126209475 1.044066963 1.121080541 1.03047929 1 20.94810659 SSSSS(ph)QESLNRPFSSK ddPTM_HeLa_A486_30min_R1 3 SSSSSQESLNRPFSSK 16 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 SSSS(0.003)S(0.997)QESLNRPFSSK;SSSS(0.003)S(0.997)QESLNRPFSSK;SSS(0.005)S(0.032)S(0.961)QES(0.001)LNRPFSSK ;; 214.59 1.08E-26 5102340000 978160 977810 597680 350080 1003460 930370 1174150 1175800 834510 1175610 TRUE FALSE FALSE 909596.0352 900324.7745 829117.7024 815003.9321 877596.6899 815590.4087 880365.2511 908096.0075 906845.9987 881229.6041 1.032189603 1.02166878 0.940864559 0.924848562 0.995877449 0.925514083 0.999019151 1.030487405 1.029068922 1 19.74915844 -6.996341284 24.993707 1.02081756 0.972111735 0.257642568 0.035505713 148.5175281 1014561.144 0.015974171 0.01071193 1.01E-07 6.996341284 -0.048705825 SSSSS(ph)QESLNRPLSAK ddPTM_HeLa_A485_30min_R1 2 SSSSSQESLNRPLSAK 16 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 S(0.007)S(0.007)S(0.029)S(0.157)S(0.761)QES(0.04)LNRPLSAK;SSS(0.001)S(0.033)S(0.966)QESLNRPLSAK ; 163.53 3.26E-12 988300000 355950 379450 334653 422690 533000 379921 595070 531360 405960 628660 TRUE FALSE FALSE 435129.8495 423823.3767 458455.0708 445780.4844 479932.6485 399813.0761 467928.4332 401043.1269 487432.4483 471946.6316 0.921989522 0.898032422 0.971412952 0.944556979 1.016921441 0.847157389 0.991485905 0.849763723 1.032812644 1 18.8482642 -7.79997481 24.99999328 1.016406565 0.933117509 0.295110034 0.053157809 228.3964799 148167.6164 0.047826791 0.012349743 1.58E-08 7.79997481 -0.083289056 SSSSS(ph)QESLNRPLSAK ddPTM_HeLa_A486_30min_R1 2 SSSSSQESLNRPLSAK 16 1 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 SSSS(0.105)S(0.894)QESLNRPLSAK;SSSS(0.033)S(0.967)QESLNRPLSAK ; 172.57 1.28E-12 818080000 464770 454520 290210 162196 447710 451210 557850 569740 374900 608310 TRUE FALSE FALSE 432192.0231 418502.1799 402587.0841 377600.4849 391554.0371 395544.2978 418270.0297 440022.6393 407396.6339 455985.2166 0.947820252 0.917797693 0.882895036 0.828098086 0.858698973 0.867449828 0.917288575 0.964993213 0.893442636 1 18.79862753 -7.980443256 0.741646804 0.994775762 0.883898465 0.411806228 0.038178815 0.747753894 0.947462554 0.040770091 0.015816076 1.05E-08 7.980443256 -0.110877297 SSSSSAS(ph)PSS(ph)PSSR ddPTM_HeLa_A485_30min_R1 6 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SSSSSAS(1)PS(0.001)S(0.995)PS(0.003)S(0.001)R;SSSSSAS(1)PS(0.001)S(0.999)PSSR;SSSSSAS(0.998)PS(0.004)S(0.978)PS(0.016)S(0.003)R;SSSSS(0.001)AS(0.8)PS(0.225)S(0.973)PSSR;SSSSSAS(1)PS(0.001)S(0.857)PS(0.141)S(0.001)R;SSSSSAS(1)PSS(1)PSSR ;;;;; 272.12 1.72E-48 2070022000 1139861 1558970 1134371 1227747 1559623 1370143 1525524 1808178 1270431 1584103 TRUE FALSE FALSE 1393419.147 1741277.98 1554022.038 1294815.71 1404341.458 1441881.569 1199583.335 1364719.51 1525394.849 1189215.275 1.171713125 1.464224364 1.306762594 1.088798417 1.180897594 1.212464723 1.008718404 1.147579869 1.282690258 1 20.18157847 -5.193247616 6.076161094 1.138206301 1.332112641 0.385328763 0.104957637 0.224960154 15.61532724 0.027706822 0.048423598 6.41E-06 5.193247616 0.19390634 SSSSSAS(ph)PSS(ph)PSSR ddPTM_HeLa_A486_30min_R1 3 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SSSSSAS(1)PSS(0.998)PS(0.001)SR;SSSSSAS(1)PS(0.001)S(0.964)PS(0.034)SR;SSSSSAS(1)PSS(0.999)PS(0.001)SR ;; 310.77 2.46E-68 1819781000 1690780 1357940 1311740 486426 1500150 1661900 1573440 1479520 1456270 1707260 TRUE FALSE FALSE 1572265.053 1250331.889 1819680.858 1132424.311 1311987.199 1456871.675 1179748.67 1142665.594 1582500.656 1279750.984 1.228571084 0.97701186 1.421902293 0.884878641 1.025189443 1.138402466 0.92185799 0.8928812 1.236569205 1 20.28743168 -5.287003092 24.99981016 1.011569508 1.18594688 0.274577575 0.143653106 1037.233887 1014351.392 0.039110836 0.058034341 5.16E-06 5.287003092 0.174377371 SSSSSASPS(ph)SPSSR ddPTM_HeLa_A485_30min_R1 1 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSS(0.001)AS(0.018)PS(0.488)S(0.488)PS(0.002)S(0.002)R 58.831 0.03256 295880000 74424 96995 90394 83617 112120 87613 117560 121700 83045 105240 TRUE FALSE FALSE 90979.36204 108337.7215 123834.5022 88184.78498 100956.9391 92200.2812 92442.34562 91852.88418 99711.36977 79005.6048 1.151555795 1.371266276 1.567414141 1.116183911 1.277845279 1.167009372 1.170073261 1.162612253 1.262079697 1 16.26966738 -5.29612815 24.99488046 1.176872968 1.36419767 0.369359778 0.118039492 649.8606605 468253.6435 0.0327196 0.04853376 5.06E-06 5.29612815 0.187324702 SSSSSASPSS(ph)PSSR ddPTM_HeLa_A485_30min_R1 6 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSSASPSS(0.992)PS(0.008)SR;SSSSSASPS(0.002)S(0.998)PSSR;SSSSSASPS(0.002)S(0.994)PS(0.004)SR;SSSSSASPS(0.001)S(0.993)PS(0.003)S(0.003)R;SSSSSASPS(0.002)S(0.998)PSSR;SSSSSASPS(0.001)S(0.999)PSSR ;;;;; 387.81 3.27E-125 30985217000 3079325 4118047 3803196 3349980 4821559 3858922 5075508 5249624 3558955 4428905 TRUE FALSE FALSE 3764310.223 4599616.774 5210156.465 3532980.925 4341507.656 4060969.189 3991084.253 3962145.483 4273204.624 3324860.491 1.132170878 1.383401435 1.567030099 1.062595238 1.305771375 1.221395364 1.200376456 1.191672701 1.285228248 1 21.66486238 -14 0.132584321 0.093472331 1.371904594 0.270079944 0.131964249 188.9027043 1.566273466 45.21155367 0.959058147 1.00E-14 14 1.278432263 SSSSSASPSS(ph)PSSR ddPTM_HeLa_A486_30min_R1 7 SSSSSASPSSPSSR 14 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-4 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSSASPS(0.002)S(0.986)PS(0.012)SR;SSSSSASPS(0.002)S(0.998)PSSR;SSSSSASPS(0.028)S(0.972)PSSR;SSSSSASPS(0.311)S(0.681)PS(0.007)S(0.002)R;SSSSSASPS(0.003)S(0.994)PS(0.002)SR;SSSSSAS(0.005)PS(0.132)S(0.842)PS(0.017)S(0.004)R;SSSS(0.003)S(0.02)AS(0.088)PS(0.123)S(0.759)PS(0.004)S(0.004)R ;;;;;; 356.29 3.05E-95 24844929000 17104192 16713386 14026326 5663240 18288729 16669042 19736527 18174544 15488627 18611748 TRUE FALSE FALSE 15905276.47 15388956.42 19457695.07 13184308.92 15994786.07 14612585.08 14798239.19 14036597.08 16831193.66 13951245.16 1.140061427 1.103052541 1.394692362 0.945027399 1.146477314 1.047403648 1.060710999 1.006117871 1.206429496 1 23.73389055 -5.282637372 24.95740957 1.062383762 1.201647219 0.330414034 0.099829047 938.3254689 1104733.589 0.027032947 0.040145162 5.22E-06 5.282637372 0.139263457 SSSSSGVPYS(ph)PAIPNK ddPTM_HeLa_A485_30min_R1 4 SSSSSGVPYSPAIPNK 16 0 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 0 SSSSSGVPYS(1)PAIPNK;SSSSSGVPYS(1)PAIPNK;SSSSSGVPY(0.001)S(0.999)PAIPNK;SSSSSGVPYS(1)PAIPNK ;;; 301.04 9.02E-68 2704000000 1784180 1799690 1456970 2033770 2397340 1960800 2829440 2612810 1570240 2943370 TRUE FALSE FALSE 2181064.686 2010148.09 1995963.833 2144869.705 2158652.412 2063464.456 2224907.03 1972014.251 1885372.765 2209642.028 0.987066981 0.909716626 0.90329737 0.970686509 0.976924038 0.933845587 1.00690836 0.8924587 0.853248056 1 21.07538123 -10.04786869 4.542722856 1.000002406 0.93812629 0.144437789 0.045847495 63411108.43 5.014605219 1940.55518 0.011403996 8.96E-11 10.04786869 -0.061876116 SSSSSGVPYS(ph)PAIPNK ddPTM_HeLa_A486_30min_R1 4 SSSSSGVPYSPAIPNK 16 0 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 0 SSSSSGVPY(0.151)S(0.849)PAIPNK;SSSSSGVPYS(1)PAIPNK;SSSSSGVPYS(1)PAIPNK;S(0.007)S(0.007)S(0.001)S(0.001)S(0.001)GVPY(0.013)S(0.97)PAIPNK ;;; 314.51 2.98E-78 2261440000 3108740 3139650 1961820 1194960 3332580 3327220 4150390 3781410 2736130 4024510 TRUE FALSE FALSE 2890833.38 2890852.7 2721489.243 2781927.27 2914576.741 2916741.425 3111918.524 2920465.491 2973299.951 3016746.501 0.958261948 0.958268353 0.902127256 0.922161431 0.966132468 0.966850023 1.031547902 0.968084488 0.98559821 1 21.52456204 -6.168693936 2.171308145 0.992833374 0.935362832 0.567466217 0.022747132 0.24684393 2.286254957 0.009020162 0.008837528 6.78E-07 6.168693936 -0.057470542 SSSSSGVPYS(ph)PAIPNKR ddPTM_HeLa_A485_30min_R1 4 SSSSSGVPYSPAIPNKR 17 1 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 0 SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR ;;; 156.08 1.14E-08 2414900000 1743390 1865950 1435300 1940310 2581350 2023760 2771680 2731870 1684050 2814530 TRUE FALSE FALSE 2131201.091 2084156.621 1966277.198 2046304.222 2324341.73 2129720.944 2179487.925 2061874.599 2022023.388 2112919.469 1.008652304 0.986387154 0.930597321 0.968472416 1.100061675 1.007951782 1.03150544 0.975841545 0.956980812 1 21.01080635 -4.206589318 18.84563165 0.996494534 1.008653575 0.007583693 0.04394678 16744.30543 5749297.538 0.011790505 5.380560582 6.21E-05 4.206589318 0.012159042 SSSSSGVPYS(ph)PAIPNKR ddPTM_HeLa_A486_30min_R1 4 SSSSSGVPYSPAIPNKR 17 1 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 0 SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR ;;; 197.1 3.58E-25 3168610000 2573190 2545560 1527640 857080 2633160 2571830 3063400 2865260 2029180 3003940 TRUE FALSE FALSE 2392822.669 2343840.555 2119183.12 1995325.554 2302884.52 2254543.763 2296904.919 2212902.846 2205070.956 2251733.872 1.062657847 1.040904782 0.941133917 0.886128498 1.022716116 1.001247879 1.020060562 0.982755056 0.979276896 1 21.1026049 SSSSSSQPEHSAMLVSTAAS(ph)PSLIK ddPTM_HeLa_A485_30min_R1 1 SSSSSSQPEHSAMLVSTAASPSLIK 25 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SSSSSSQPEHSAMLVS(0.013)T(0.217)AAS(0.604)PS(0.163)LIK 50.908 0.0079092 0 69077 79640 61803 54647 98998 62006 87874 87837 61634 86636 TRUE FALSE FALSE 84442.94034 88953.20522 84666.50154 57632.22724 89141.41152 65252.53828 69099.00204 66294.83803 74003.37846 65039.23962 1.29833837 1.367685197 1.301775698 0.886114714 1.370578931 1.003279538 1.062420201 1.019305244 1.137826624 1 15.98902277 -5.103403747 8.295893062 1.079149611 1.333408385 0.484703084 0.119981943 0.247668338 17.83737702 0.03105263 0.054043037 7.88E-06 5.103403747 0.254258774 SSSSSSQPEHSAMLVSTAAS(ph)PSLIK ddPTM_HeLa_A486_30min_R1 2 SSSSSSQPEHSAMLVSTAASPSLIK 25 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SSSSSSQPEHSAMLVS(0.047)T(0.317)AAS(0.587)PS(0.049)LIK;SSSSSSQPEHSAMLVST(0.012)AAS(0.987)PSLIK ; 145.26 3.51E-09 309170000 278860 261436 174705 21685.1 300190 252730 305680 282050 233921 208601 TRUE FALSE FALSE 259313.354 240718.8592 242355.4548 50484.0087 262537.371 221550.7422 229195.6308 217833.3721 254197.4606 156365.9518 1.6583748 1.53945828 1.549924724 0.322858065 1.678993208 1.4168733 1.465764306 1.393099774 1.625657361 1 17.25456688 SSSSVGS(ph)PTR ddPTM_HeLa_A485_30min_R1 2 SSSSVGSPTR 10 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 SSSSVGS(1)PTR;SSSSVGS(0.999)PT(0.001)R ; 179.72 1.67E-09 4793600000 2736200 3706400 3129200 2969100 4021000 3062000 3960500 4149500 3014700 3846300 TRUE FALSE FALSE 3344858.25 4139831.239 4286821.297 3131294.415 3620655.121 3222321.585 3114306.821 3131828.619 3619722.638 2887488.196 1.158397203 1.433713649 1.484619505 1.084435399 1.253911662 1.115960089 1.078552226 1.084620406 1.253588722 1 21.46138362 -5.272435818 24.81084734 1.131093739 1.366390475 0.49697594 0.107876308 515.5653925 1163249.902 0.029993638 0.044983387 5.34E-06 5.272435818 0.235296736 SSSSVGS(ph)PTR ddPTM_HeLa_A486_30min_R1 4 SSSSVGSPTR 10 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 SSSSVGS(1)PTR;SSSSVGS(0.987)PT(0.013)R;SSSSVGS(1)PTR;SSSSVGS(0.999)PT(0.001)R ;;; 258.45 1.94E-26 5514730000 4317140 4028200 3470740 1398642 4660190 3914330 4234970 4080700 3770190 4890090 TRUE FALSE FALSE 4014530.78 3708990.762 4814703.478 3256109.259 4075665.516 3431419.763 3175335.713 3151613.691 4096993.105 3665579.635 1.095196716 1.011842909 1.31349035 0.888293144 1.111874771 0.936119278 0.866257462 0.859785902 1.117693111 1 21.80560992 -5.290124471 24.98835745 0.963087851 1.12734339 0.332376765 0.110813497 818.6020196 713104.7131 0.0311113 0.046155919 5.13E-06 5.290124471 0.16425554 SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR ddPTM_HeLa_A485_30min_R1 1 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 0 P08047;H3BVI2;P08047-2 P08047 SP1 Transcription factor Sp1 1 0 SSSTGSSSSTGGGGQES(0.001)QPS(0.999)PLALLAATCSR 108.72 7.53E-05 62240000 12276 19889 26875 16230 25990 16904 22665 23683 16417 23581 TRUE FALSE FALSE 15006.75385 22214.84554 36817.18086 17116.6038 23402.34434 17789.0673 17822.43759 17874.70712 19711.74131 17702.69068 0.847710335 1.254885257 2.079750561 0.96689278 1.321965388 1.004879294 1.006764334 1.009716966 1.113488434 1 14.11168104 -5.959346952 1.725198133 1.028902213 1.355769129 0.146722282 0.308293607 0.673143728 4.083295418 0.120048803 0.136787604 1.10E-06 5.959346952 0.326866916 SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR ddPTM_HeLa_A486_30min_R1 1 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 0 P08047;H3BVI2;P08047-2 P08047 SP1 Transcription factor Sp1 1 0 SSSTGSSSSTGGGGQES(0.001)QPS(0.999)PLALLAATCSR 137.64 5.78E-07 77163000 27066 33547 28324 10023 30591 24228 30190 24523 27472 34350 TRUE FALSE FALSE 25168.81317 30888.61354 39291.81134 23334.05053 26753.99153 21238.99569 22636.14268 18939.64823 29853.29508 25748.53642 0.977485196 1.199625992 1.52598232 0.906228228 1.03904902 0.82486225 0.87912347 0.735562128 1.159417164 1 14.65220281 -5.313432592 24.99609183 0.921305017 1.230890988 0.404918222 0.165780913 309.3888542 148740.1579 0.046551138 0.069046567 4.86E-06 5.313432592 0.309585971 SSSVGSSSSYPIS(ph)PAVSR ddPTM_HeLa_A485_30min_R1 6 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSS(0.001)S(0.011)YPIS(0.988)PAVSR ;;;;; 452.76 7.79E-204 7392800000 1516439 2010250 1985210 1606661 2814740 1767230 2334020 2486700 1677510 2203000 TRUE FALSE FALSE 1853765.624 2245331.251 2719621.79 1694428.822 2534494.602 1859759.43 1835337.56 1876832.926 2014170.87 1653832.643 1.120890697 1.357653243 1.644435912 1.024546727 1.532497628 1.124514888 1.109748055 1.134838482 1.217880708 1 20.65738182 -6.319656133 23.64646199 1.125345401 1.337039383 0.282852273 0.173810743 207.0756055 84108.89466 0.059304451 0.05230164 4.79E-07 6.319656133 0.211693982 SSSVGSSSSYPIS(ph)PAVSR ddPTM_HeLa_A486_30min_R1 6 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 SSSVGSSSSYPIS(1)PAVSR;SSSVGS(0.001)S(0.006)S(0.197)S(0.101)Y(0.029)PIS(0.643)PAVS(0.022)R;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR ;;;;; 441.25 3.54E-203 6830200000 1442400 1585620 1304300 543070 1835320 1527500 1722050 1759800 1254740 1582630 TRUE FALSE FALSE 1341295.209 1459969.696 1809359.89 1264294.405 1605117.052 1339052.58 1291174.876 1359131.956 1363501.873 1186329.147 1.130626532 1.230661575 1.525175281 1.065719753 1.353011562 1.128736139 1.08837828 1.145661775 1.149345337 1 20.17807291 -6.393463139 6.68592783 1.108200441 1.262821996 0.296564786 0.122306486 0.340234314 17.02518491 0.042627447 0.037457463 4.04E-07 6.393463139 0.154621555 SSSVLS(ph)LEGSEK ddPTM_HeLa_A485_30min_R1 1 SSSVLSLEGSEK 12 0 A1L390-3;A1L390;A1L390-2;G3V311;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SSSVLS(0.999)LEGS(0.001)EK 177.21 2.89E-10 0 209930 229330 202800 241860 375630 261710 336440 401370 319480 367480 TRUE FALSE FALSE 256628.2043 256148.1486 277824.1592 255072.1994 338230.9583 275412.7309 264556.8455 302933.3782 383596.7056 275873.999 0.930237011 0.928496885 1.007069025 0.924596737 1.226034202 0.998327976 0.958977093 1.098086008 1.390477925 1 18.07364996 -5.490103516 0.503604373 1.136886844 0.885409208 0.247563397 0.125467178 2.339611314 1.029133546 0.100792557 0.30731303 3.24E-06 5.490103516 -0.251477636 SSSVLS(ph)LEGSEK ddPTM_HeLa_A486_30min_R1 2 SSSVLSLEGSEK 12 0 A1L390-3;A1L390;A1L390-2;G3V311;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SSSVLS(1)LEGSEK;SSSVLS(1)LEGSEK ; 288.29 9.33E-42 337190000 711890 667850 367340 324450 652160 800230 918790 877310 540350 960730 TRUE FALSE FALSE 661990.1872 614927.1337 509583.8857 755335.9968 570360.0116 701505.7587 688899.024 677565.6645 587187.9731 720156.9547 0.91923043 0.853879324 0.707601145 1.048849132 0.791994034 0.974101207 0.956595669 0.940858323 0.815361109 1 19.45795184 -5.261475805 25 0.926951149 0.829601211 0.229956681 0.088126728 5.236048435 3594298.33 0.023647848 0.037802884 5.48E-06 5.261475805 -0.097349938 SSSVS(ph)PSASFR ddPTM_HeLa_A485_30min_R1 5 SSSVSPSASFR 11 0 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 SSSVS(0.809)PS(0.191)ASFR;SSS(0.002)VS(0.99)PS(0.008)ASFR;SSSVS(0.959)PS(0.041)ASFR;SSS(0.004)VS(0.996)PSASFR;SSS(0.002)VS(0.691)PS(0.308)ASFR ;;;; 218.12 8.78E-18 4447700000 1384220 1707380 1665790 1654440 2270160 1586440 2298810 2329630 1446080 2122380 TRUE FALSE FALSE 1692134.963 1907043.239 2282035.04 1744817.868 2044134.899 1669503.545 1807650.464 1758284.59 1736294.992 1593309.726 1.062025127 1.196906796 1.432260786 1.095090201 1.282948862 1.047821098 1.134525469 1.103542244 1.089741037 1 20.60359531 -6.268629947 24.85798913 1.085309826 1.218441839 0.318756781 0.100738615 696.1763511 2406694.754 0.035058874 0.031529133 5.39E-07 6.268629947 0.133132013 SSSVS(ph)PSASFR ddPTM_HeLa_A486_30min_R1 5 SSSVSPSASFR 11 0 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 SSSVS(0.999)PS(0.001)ASFR;SSSVS(0.999)PS(0.001)ASFR;SSSVS(0.995)PS(0.005)ASFR;SSS(0.019)VS(0.919)PS(0.062)ASFR;SSS(0.002)VS(0.987)PS(0.011)ASFR ;;;; 225.17 4.87E-18 3971970000 1936470 2178150 1923740 851610 2748600 2305060 2685880 2713450 1839050 2288050 TRUE FALSE FALSE 1800733.453 2005545.461 2668663.648 1982591.118 2403844.958 2020685.133 2013844.416 2095656.669 1998460.335 1715107.387 1.049924609 1.169341043 1.555974668 1.155957424 1.401571106 1.178168287 1.174179781 1.221880732 1.165210033 1 20.70986748 -8.293530692 0.634992189 0.997191684 1.262110238 0.230133074 0.134523843 1.803787382 1.486807109 0.14983692 0.056563705 5.09E-09 8.293530692 0.264918554 SSSVS(ph)PSSWK ddPTM_HeLa_A485_30min_R1 3 SSSVSPSSWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 SSSVS(0.993)PS(0.006)SWK;SSS(0.004)VS(0.978)PS(0.015)S(0.003)WK;SSS(0.008)VS(0.916)PS(0.029)S(0.046)WK ;; 167.11 3.82E-07 1032210000 1325040 1128370 887760 1415520 1345670 1274780 1642860 1611290 1003720 1691360 TRUE FALSE FALSE 1619790.577 1260323.056 1216179.367 1492846.273 1211690.37 1341525.51 1291849.54 1216118.601 1205157.397 1269735.079 1.275691759 0.992587412 0.957821349 1.17571476 0.954285969 1.056539692 1.017416594 0.957773492 0.949140822 1 20.27609609 -4.259202675 24.67637827 1.009481 1.275691871 0.605700862 0.065050947 115.8636771 1278159.241 0.016072108 0.102748007 5.51E-05 4.259202675 0.266210871 SSSVS(ph)PSSWK ddPTM_HeLa_A486_30min_R1 4 SSSVSPSSWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 SSSVS(0.981)PS(0.017)S(0.002)WK;SSSVS(0.929)PS(0.07)S(0.001)WK;SSS(0.001)VS(0.961)PS(0.032)S(0.007)WK;SSSVS(0.889)PS(0.091)S(0.021)WK ;;; 182.92 1.36E-09 1442450000 3021100 2916850 1540190 889170 2431970 2771590 3145400 2838980 2218940 3287670 TRUE FALSE FALSE 2809336.491 2685708.183 2136592.816 2070032.696 2126929.645 2429659.405 2358387.651 2192606.228 2411279.506 2464416.033 1.139960321 1.089794964 0.866977323 0.839968848 0.863056244 0.985896607 0.956976265 0.889706202 0.978438492 1 21.2328144 -4.670764133 5.384387978 0.917364421 1.125748793 0.667362459 0.054483735 0.115489357 5.257803825 0.01473214 0.040468399 2.13E-05 4.670764133 0.208384372 SSSVSPS(ph)ASFR ddPTM_HeLa_A485_30min_R1 1 SSSVSPSASFR 11 0 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 SSSVS(0.057)PS(0.943)ASFR 134.38 2.77E-05 173530000 154730 167260 175570 233660 257890 190350 266070 287910 157790 309330 TRUE FALSE FALSE 189149.1547 186819.602 240520.6491 246424.2541 232213.5661 200316.4317 209221.9709 217299.6211 189457.0057 232219.7238 0.814526654 0.80449498 1.035745996 1.061168492 0.999973483 0.862615924 0.900965549 0.935750063 0.815852343 1 17.82513099 -4.738395725 24.74177893 0.94988175 0.809510615 0.378226801 0.072801419 240.3615882 258069.608 0.020295936 0.053617467 1.83E-05 4.738395725 -0.140371135 SSSVSPS(ph)ASFR ddPTM_HeLa_A486_30min_R1 1 SSSVSPSASFR 11 0 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 SSSVS(0.092)PS(0.907)ASFR 105.03 0.00075259 458840000 185440 183520 131460 57598 197270 222530 302390 274500 151370 266440 TRUE FALSE FALSE 172441.6136 168977.2068 182364.8326 134091.0548 172526.5571 195076.5111 226728.8236 212002.3423 164490.8735 199721.6898 0.863409547 0.846063375 0.913094781 0.671389547 0.863834856 0.976741742 1.13522384 1.061488827 0.82360045 1 17.60763149 -6.262680593 3.859730141 1.014498181 0.825670306 0.44710997 0.093679688 0.207165438 7.110361345 0.034069592 0.031781609 5.46E-07 6.262680593 -0.188827876 SSSVSPS(ph)SWK ddPTM_HeLa_A485_30min_R1 1 SSSVSPSSWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 S(0.001)S(0.001)S(0.005)VS(0.449)PS(0.506)S(0.037)WK 65.695 0.018973 303080000 629730 585650 478290 693660 646860 523390 757980 695960 512990 880460 TRUE FALSE FALSE 769811.266 654136.673 655229.3743 731552.8894 582456.3471 550793.8911 596031.3809 525274.7188 615942.3876 660977.5257 1.164655735 0.989650401 0.99130356 1.106774226 0.881204465 0.833301995 0.90174228 0.794693765 0.931865856 1 19.33424169 -5.773293095 24.96137479 0.877908115 1.052721832 0.581354045 0.071071943 146.6377342 308786.4589 0.021138309 0.024153348 1.69E-06 5.773293095 0.174813717 SSSVSPSSWKS(ph)PPAS(ph)PESWK ddPTM_HeLa_A485_30min_R1 3 SSSVSPSSWKSPPASPESWK 20 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 SSS(0.001)VS(0.02)PS(0.039)S(0.039)WKS(0.903)PPAS(0.996)PES(0.002)WK;SSSVS(0.003)PS(0.119)S(0.119)WKS(0.759)PPAS(0.994)PES(0.005)WK;SSSVSPS(0.008)S(0.028)WKS(0.965)PPAS(0.998)PES(0.002)WK ;; 111.84 2.66E-05 638560000 836980 721180 417530 1404530 1230400 1059380 2095770 2190530 782590 2135990 TRUE FALSE FALSE 1023163.313 805515.7276 571991.7219 1481255.917 1107897.056 1114847.499 1647991.619 1653299.083 939648.6347 1603527.003 0.638070523 0.502339983 0.356708506 0.923748658 0.690912628 0.6952471 1.027729259 1.031039128 0.585988657 1 20.61281722 -5.268090057 24.81436072 0.846205191 0.499369698 0.508335993 0.158428589 391.342526 1460139.662 0.045351893 0.069075486 5.39E-06 5.268090057 -0.346835492 SSSVSPSSWKS(ph)PPAS(ph)PESWK ddPTM_HeLa_A486_30min_R1 4 SSSVSPSSWKSPPASPESWK 20 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 S(0.001)S(0.001)S(0.001)VS(0.002)PS(0.083)S(0.092)WKS(0.827)PPAS(0.987)PES(0.007)WK;SSSVS(0.003)PS(0.027)S(0.028)WKS(0.942)PPAS(0.998)PES(0.001)WK;SSSVSPS(0.031)S(0.031)WKS(0.939)PPAS(0.993)PES(0.006)WK;SSSVSPS(0.003)S(0.003)WKS(0.993)PPAS(1)PESWK ;;; 130.6 4.98E-07 959900000 1622820 1383670 622010 1179630 1618000 2006550 2916170 2771950 1259050 3004090 TRUE FALSE FALSE 1509068.698 1274022.95 862868.93 2746238.255 1415055.353 1759002.262 2186513.422 2140837.496 1368185.468 2251846.311 0.670147288 0.565768163 0.383182869 1.219549595 0.628397838 0.781137795 0.970986968 0.950703201 0.607583857 1 21.10267694 -5.237564894 24.99456277 0.866929365 0.542306319 0.420089627 0.182654487 788.0705745 825042.0598 0.048198354 0.083424992 5.79E-06 5.237564894 -0.324623046 SST(ph)DFSELEQPR ddPTM_HeLa_A485_30min_R1 2 SSTDFSELEQPR 12 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(0.002)S(0.031)T(0.967)DFSELEQPR;S(0.002)S(0.058)T(0.94)DFSELEQPR ; 264.61 5.98E-33 528350000 407310 382210 397830 314920 659390 352810 640550 668850 354280 388890 TRUE FALSE FALSE 497914.7043 426906.1347 545003.8721 332123.2822 593738.8163 371282.5861 503691.2597 504813.4888 425380.7464 291946.88 1.705497604 1.462273324 1.866791219 1.137615453 2.033722081 1.271747059 1.725283927 1.729127877 1.457048441 1 18.15534637 -8.078272149 6.088302962 1.000016435 1.609219266 0.349554971 0.253301435 0.778569504 59.38707332 0.221275125 0.057412814 8.35E-09 8.078272149 0.609202831 SST(ph)DFSELEQPR ddPTM_HeLa_A486_30min_R1 1 SSTDFSELEQPR 12 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 SS(0.04)T(0.959)DFSELEQPR 240.18 4.38E-27 401190000 154360 264660 262620 133060 281000 248230 318120 322890 158410 208820 TRUE FALSE FALSE 143540.1611 243687.3777 364313.4972 309770.4045 245754.3598 217605.9064 238523.0113 249374.9956 172141.1063 156530.1128 0.917013082 1.556808293 2.32743394 1.978982823 1.570013305 1.390185585 1.523815495 1.593143908 1.099731568 1 17.2560807 -7.72842833 0.823700948 0.981175691 1.683933889 0.270979471 0.35135862 0.83302123 1.21738422 0.361240022 0.138754652 1.87E-08 7.72842833 0.702758198 SST(ph)PEEVK ddPTM_HeLa_A485_30min_R1 2 SSTPEEVK 8 0 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 1 0 SS(0.008)T(0.992)PEEVK;S(0.03)S(0.095)T(0.875)PEEVK ; 155.42 5.73E-06 613120000 2330400 1852110 1236250 3986600 2660200 2097200 3254200 3010200 1946180 5258700 TRUE FALSE FALSE 2848789.44 2068698.153 1693590.32 4204377.863 2395341.147 2207006.149 2558913.586 2271943.73 2336760.475 3947802.869 0.721613904 0.524012526 0.428995666 1.064991846 0.606752978 0.559046696 0.648186769 0.575495739 0.591914174 1 21.91261852 -10.15915488 4.846573566 1.000029291 0.634426856 0.315381193 0.161027526 40864365.33 85657927.27 8921.503278 0.039205954 6.93E-11 10.15915488 -0.365602435 SST(ph)PGLK ddPTM_HeLa_A485_30min_R1 2 SSTPGLK 7 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 SS(0.058)T(0.941)PGLK;SS(0.056)T(0.944)PGLK ; 109.71 0.014753 3210000000 10415100 8859900 5977000 13223000 11678900 9424500 13455900 12817800 7881800 17289700 TRUE FALSE FALSE 12731903.06 9895988.234 8188141.024 13945339.01 10516107.71 9917952.247 10580937.04 9674214.452 9463604.964 12979695.98 0.980909189 0.762420649 0.630842281 1.074396429 0.810196766 0.764112831 0.815191439 0.745334441 0.729108369 1 23.62975326 -5.983471671 24.94646905 0.794226404 0.851472548 0.025525737 0.131672613 950.0666008 1433941.892 0.040783545 0.046233298 1.04E-06 5.983471671 0.057246144 SST(ph)PGLK ddPTM_HeLa_A486_30min_R1 2 SSTPGLK 7 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 S(0.003)S(0.215)T(0.782)PGLK;S(0.137)S(0.077)T(0.786)PGLK ; 106.6 0.016185 2580290000 14241900 13515300 6568400 5607500 12163600 14453100 16944100 15518400 9674200 18473000 TRUE FALSE FALSE 13243616.36 12444298.41 9111860.388 13054543.39 10637927.87 12670023.47 12704506.96 11985199.08 10512767.45 13847240.56 0.95640834 0.898684352 0.658027161 0.942754142 0.768234496 0.914985438 0.917475717 0.865529781 0.759195841 1 23.72309517 SST(ph)PLHS(ph)PS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 3 0 S(0.274)S(0.329)T(0.397)PLHS(1)PS(1)PIR 76.391 0.0031683 0 186240 204050 179480 209550 267680 193130 249910 233000 206430 257810 TRUE FALSE FALSE 227668.4455 227911.8725 245877.1208 220997.1859 241028.8393 203241.9882 196514.6869 175856.3847 247858.6075 193542.7116 1.176321462 1.177579205 1.270402376 1.141852277 1.245352188 1.050114398 1.015355656 0.908617964 1.280640358 1 17.56229245 -6.274819769 21.7257891 1.043009828 1.201353121 0.391201519 0.094143705 137.7643516 223686.3199 0.031679167 0.028166518 5.31E-07 6.274819769 0.158343293 SST(ph)PLHS(ph)PSPIR ddPTM_HeLa_A485_30min_R1 3 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.233)S(0.321)T(0.446)PLHS(0.999)PS(0.001)PIR;S(0.23)S(0.32)T(0.45)PLHS(0.982)PS(0.018)PIR;S(0.123)S(0.146)T(0.734)PLHS(0.767)PS(0.23)PIR ;; 147.12 2.73E-07 3119000000 1980730 2485000 2582830 2147370 3265780 2542980 3057970 3143910 2293950 2933160 TRUE FALSE FALSE 2421336.555 2775599.133 3538326.298 2264675.386 2940627.476 2676126.501 2404609.728 2372861.143 2754324.724 2201977.193 1.099619271 1.260503125 1.606885988 1.028473589 1.335448653 1.215328891 1.092022995 1.077604778 1.250841622 1 21.0703681 -6.607284206 4.19782867 1.112342885 1.272142781 0.193581409 0.154606005 0.384726554 12.78914427 0.061059112 0.04663958 2.47E-07 6.607284206 0.159799896 SST(ph)PLHS(ph)PSPIR ddPTM_HeLa_A486_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.273)S(0.329)T(0.398)PLHS(0.998)PS(0.002)PIR 77.222 0.012723 840870000 1052000 1205300 831680 308280 1136200 1091800 1285900 1252300 1034000 1229400 TRUE FALSE FALSE 978260.2325 1109787.638 1153728.769 717691.4196 993687.2014 957104.8166 964154.2191 967178.6275 1123627.953 921550.2379 1.061537605 1.204261681 1.251943434 0.778787081 1.078277841 1.03858127 1.046230774 1.049512645 1.219280194 1 19.81370329 SST(ph)PLHSPS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.217)S(0.317)T(0.466)PLHS(0.003)PS(0.997)PIR 174.59 1.11E-10 424090000 192290 225320 234270 213780 303390 213610 259890 237220 211800 292370 TRUE FALSE FALSE 235064.2471 251669.214 320936.2218 225458.2601 273183.4263 224794.2893 204362.3784 179041.4231 254306.3173 219487.5397 1.070968527 1.146621874 1.462207022 1.027203004 1.244642073 1.024177908 0.931088747 0.815724771 1.158636694 1 17.74377951 -6.40537016 4.091359377 0.962391528 1.193537688 0.364663822 0.135163695 0.247451573 7.051644348 0.049260248 0.042618318 3.93E-07 6.40537016 0.23114616 SST(ph)PLHSPS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.203)S(0.312)T(0.485)PLHS(0.003)PS(0.997)PIR 184.48 1.00E-12 530670000 152370 160170 134310 43317 184230 157850 187470 186240 135450 164920 TRUE FALSE FALSE 141689.6498 147477.5459 186318.4289 100844.1651 161122.1555 138376.0719 140563.0231 143837.2176 147190.9151 123622.9586 1.146143496 1.192962437 1.507150703 0.815739781 1.303335217 1.119339591 1.137030086 1.163515412 1.190643848 1 16.91558717 -14 0.146986767 0.400019291 1.23072672 0.097698676 0.161629176 334.488754 2.944553585 59.0058535 0.842492516 1.00E-14 14 0.83070743 SST(ph)PLPTISSSAENTR ddPTM_HeLa_A485_30min_R1 10 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 S(0.154)S(0.029)T(0.817)PLPTISSSAENTR;S(0.003)S(0.083)T(0.914)PLPTISSSAENTR;S(0.004)S(0.034)T(0.963)PLPTISSSAENTR;S(0.007)S(0.007)T(0.986)PLPTISSSAENTR;SS(0.002)T(0.998)PLPTISSSAENTR;S(0.004)S(0.044)T(0.952)PLPTISSSAENTR;SS(0.038)T(0.962)PLPTISSSAENTR;SS(0.002)T(0.998)PLPTISSSAENTR;S(0.026)S(0.163)T(0.812)PLPTISSSAENTR;S(0.143)S(0.025)T(0.832)PLPTISSSAENTR ;;;;;;;;; 378.91 1.22E-118 75992950000 7717513 8431940 7238102 8623490 10683820 8030870 10733220 12633770 7480180 14506550 TRUE FALSE FALSE 9434247.142 9417982.035 9915777.132 9094569.423 9620101.368 8451353.935 8439979.865 9535318.099 8981383.514 10890334.06 0.866295477 0.864801941 0.910511751 0.835104724 0.883361458 0.776041753 0.774997334 0.875576272 0.82471148 1 23.37654487 -5.568770422 2.170065422 0.840396029 0.877607623 0 0.062557117 0.983261431 9.355690584 0.019529768 0.028892149 2.70E-06 5.568770422 0.037211594 SST(ph)PLPTISSSAENTR ddPTM_HeLa_A486_30min_R1 8 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-2;P42167-3;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SS(0.028)T(0.972)PLPTISSSAENTR;SS(0.018)T(0.982)PLPTISSSAENTR;S(0.025)S(0.025)T(0.95)PLPTISSSAENTR;S(0.004)S(0.004)T(0.993)PLPTISSSAENTR;SS(0.001)T(0.999)PLPTISSSAENTR;S(0.02)S(0.02)T(0.959)PLPT(0.001)ISSSAENTR;S(0.003)S(0.047)T(0.95)PLPTISSSAENTR;SS(0.01)T(0.99)PLPTISSSAENTR ;;;;;;; 419.88 7.82E-171 73424710000 9514370 9540512 6738348 3316889 10307662 9031915 10952160 10059154 8001600 10536341 TRUE FALSE FALSE 8847461.795 8784487.083 9347616.805 7721885.218 9014778.917 7917649.157 8211813.728 7768904.224 8695185.131 7897972.634 1.120219353 1.112245824 1.183546365 0.977704732 1.141404172 1.002491339 1.039736918 0.983658033 1.100938878 1 22.91305094 -5.257001878 24.99972096 1.037712195 1.136028045 0.453814769 0.051973754 345.3706136 1945722.85 0.013577554 0.022520414 5.53E-06 5.257001878 0.09831585 SST(ph)PPGESYFGVSSLQLK ddPTM_HeLa_A485_30min_R1 3 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.131)S(0.131)T(0.738)PPGESYFGVSSLQLK;S(0.127)S(0.127)T(0.745)PPGESYFGVSSLQLK;S(0.13)S(0.13)T(0.74)PPGESYFGVSSLQLK ;; 244.36 2.16E-45 6083140000 794450 783650 608620 1056540 1153780 916180 1345040 1310750 798510 1465420 TRUE FALSE FALSE 971172.6617 875291.0507 833773.8648 1114256.105 1038905.612 964149.7681 1057661.216 989286.5073 958763.6326 1100117.763 0.882789729 0.795633959 0.757895102 1.012851662 0.944358547 0.876405964 0.961407271 0.899255098 0.871510001 1 20.06922654 -5.253368631 24.99918271 0.932449688 0.810459032 0.539748369 0.053083706 487.5206525 1510093.998 0.014567762 0.024669222 5.58E-06 5.253368631 -0.121990656 SST(ph)PPGESYFGVSSLQLK ddPTM_HeLa_A486_30min_R1 4 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.116)S(0.116)T(0.767)PPGESYFGVSSLQLK;S(0.15)S(0.15)T(0.699)PPGESYFGVSSLQLK;S(0.115)S(0.115)T(0.77)PPGESYFGVSSLQLK;S(0.084)S(0.084)T(0.832)PPGESYFGVSSLQLK ;;; 187 3.06E-17 10384800000 5561180 5349780 3091970 2377860 5404380 6233060 7471790 7029590 4431780 7558370 TRUE FALSE FALSE 5171370 4925843.949 4289263.59 5535778.25 4726512.267 5464088.43 5602269.113 5429105.812 4815930.259 5665704.955 0.912749612 0.869414131 0.757057352 0.977067866 0.834231981 0.964414574 0.988803539 0.958240123 0.850014305 1 22.43382404 -6.271545457 24.74907756 0.951966335 0.869727898 0.288827073 0.064482709 833.1691159 2040366.961 0.022427302 0.020015601 5.35E-07 6.271545457 -0.082238436 SST(ph)PPLHVHVDENTPVHVHIK ddPTM_HeLa_A485_30min_R1 3 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-3;Q5BJF6-4;Q5BJF6-9 Q5BJF6-3 ODF2 Outer dense fiber protein 2 1 0 S(0.303)S(0.303)T(0.395)PPLHVHVDENTPVHVHIK;S(0.291)S(0.291)T(0.417)PPLHVHVDENTPVHVHIK;S(0.29)S(0.29)T(0.42)PPLHVHVDENTPVHVHIK ;; 277.15 4.46E-73 3801300000 1148660 1256020 1065880 1245170 1472800 1217540 1661010 1759760 1156070 1755770 TRUE FALSE FALSE 1404175.454 1402900.613 1460193.367 1313190.484 1326162.861 1281288.512 1306121.644 1328176.101 1388082.645 1318088.852 1.065311684 1.064344495 1.107811029 0.996283735 1.006125542 0.972080532 0.990920789 1.007652936 1.053102485 1 20.33001619 -5.272986279 24.94516694 1.002303241 1.077674612 0.706763751 0.022241949 386.0497006 833996.3907 0.006522733 0.009780727 5.33E-06 5.272986279 0.075371371 SST(ph)PPLHVHVDENTPVHVHIK ddPTM_HeLa_A486_30min_R1 2 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-3;Q5BJF6-4;Q5BJF6-9 Q5BJF6-3 ODF2 Outer dense fiber protein 2 1 0 S(0.296)S(0.296)T(0.409)PPLHVHVDENTPVHVHIK;S(0.297)S(0.297)T(0.406)PPLHVHVDENTPVHVHIK ; 222.06 4.91E-36 1999570000 1156950 1048840 1003090 267510 1280060 1028490 1106880 1121290 919930 1088840 TRUE FALSE FALSE 1075853.779 965726.0986 1391513.312 622776.7992 1119502.939 901605.3607 829926.9166 865996.7446 999670.2731 816187.3768 1.318145575 1.183216166 1.704894429 0.763031648 1.371624912 1.10465487 1.016833806 1.061026878 1.224804869 1 19.63854087 -5.261066103 24.99999977 1.090836317 1.380198446 0.373263815 0.191607161 38.85245405 2602049.376 0.050933316 0.081737627 5.48E-06 5.261066103 0.289362128 SST(ph)PPRQS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.053)S(0.158)T(0.789)PPRQS(0.563)PS(0.437)R;S(0.25)S(0.303)T(0.447)PPRQS(1)PSR ; 143.43 1.74E-05 13110560000 681881 783998 730750 799565 1011880 758935 1018940 1023200 714492 1035260 TRUE FALSE FALSE 833563.076 875679.7462 1001084.834 843243.2113 911133.6743 798671.6631 801235.145 772258.5957 857883.9907 777188.7345 1.072536231 1.126727277 1.288084592 1.084991552 1.172345447 1.027641842 1.030940246 0.993656446 1.103829678 1 19.56790546 -6.266507798 24.66320041 1.030800076 1.151881041 0.476313336 0.061680083 317.7861739 1546360.109 0.02139059 0.01945426 5.41E-07 6.266507798 0.121080966 SST(ph)PPRQS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.005)S(0.057)T(0.938)PPRQS(0.641)PS(0.359)R;S(0.221)S(0.317)T(0.462)PPRQS(0.999)PS(0.001)R ; 95.981 0.0023796 18234580000 624520 690040 525720 246260 751520 670570 731610 689200 574850 718280 TRUE FALSE FALSE 580744.373 635358.7173 729292.8633 573305.7253 657257.354 587841.8913 548553.4398 532284.2051 624678.4608 538418.0128 1.078612452 1.180047291 1.354510521 1.064796704 1.220719475 1.091794623 1.018824458 0.988607722 1.160210925 1 19.03836715 -6.456106758 4.113257422 1.041833079 1.182633414 0.362396039 0.086608156 0.252556046 8.335016645 0.032128627 0.027267392 3.50E-07 6.456106758 0.140800335 SST(ph)PPRQS(ph)PSRS(ph)S(ph)SPQPK ddPTM_HeLa_A486_30min_R1 1 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.018)S(0.021)T(0.962)PPRQS(1)PS(0.033)RS(0.914)S(0.663)S(0.391)PQPK 146.5 1.71E-08 330040000 98812 94913 62212 72190 122170 123840 174840 170180 78626 152410 TRUE FALSE FALSE 91885.78907 87391.74821 86302.1525 168061.9683 106846.2994 108561.8799 131093.1827 131433.729 85441.36499 114245.544 0.804283352 0.764946668 0.755409353 1.471059285 0.935233845 0.950250453 1.147468673 1.150449501 0.747874814 1 16.80177837 SST(ph)PPRQS(ph)PSRSS(ph)S(ph)PQPK ddPTM_HeLa_A485_30min_R1 2 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.265)S(0.328)T(0.408)PPRQS(0.997)PS(0.002)RS(0.153)S(0.879)S(0.967)PQPK;S(0.013)S(0.017)T(0.971)PPRQS(0.978)PS(0.022)RS(0.313)S(0.895)S(0.791)PQPK ; 162.01 2.05E-12 2035310000 798410 782710 619270 1553010 1497950 1059710 1771410 1990490 986480 2142710 TRUE FALSE FALSE 976013.55 874241.1258 848363.743 1637847.004 1348808.838 1115194.777 1392933.782 1502319.207 1184457.487 1608571.831 0.606757828 0.543489019 0.52740184 1.018199481 0.838513278 0.693282548 0.865944408 0.933945987 0.73634106 1 20.61734893 -5.245326499 24.99034672 0.857931939 0.557643473 0.673554503 0.098746824 492.5166693 763869.9788 0.026776126 0.04619632 5.68E-06 5.245326499 -0.300288466 SST(ph)PPRQS(ph)PSRSS(ph)S(ph)PQPK ddPTM_HeLa_A486_30min_R1 2 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 4 0 S(0.067)S(0.083)T(0.849)PPRQS(1)PS(0.007)RS(0.544)S(0.805)S(0.644)PQPK;S(0.03)S(0.036)T(0.943)PPRQS(0.99)PS(0.003)RS(0.109)S(0.963)S(0.927)PQPK ; 150.26 1.23E-08 2516800000 1740750 1743780 1057830 1470910 2251700 2549460 3345700 3218400 1584870 2992670 TRUE FALSE FALSE 1618732.414 1605596.522 1467450.106 3424352.816 1969270.79 2234933.546 2508570.473 2485640.577 1722247.808 2243285.953 0.721589868 0.71573422 0.65415205 1.526489662 0.877850988 0.996276709 1.118257113 1.108035547 0.767734406 1 21.0971821 SST(ph)PPRQSPS(ph)R ddPTM_HeLa_A485_30min_R1 2 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.01)S(0.025)T(0.965)PPRQS(0.035)PS(0.966)R;S(0.028)S(0.02)T(0.951)PPRQS(0.27)PS(0.73)R ; 109.1 0.00086019 375060000 345450 432200 372700 393690 503310 399200 534480 540020 366560 531550 TRUE FALSE FALSE 422294.1607 482742.0304 510577.2393 415196.2878 453198.6892 420101.4947 420283.9817 407579.2483 440125.2297 399044.3675 1.05826368 1.209745256 1.279499928 1.040476503 1.135710027 1.052768887 1.053226197 1.0213883 1.102948107 1 18.60618963 -5.285054721 24.98740802 1.061776971 1.185227197 0.454859201 0.062309706 677.7711193 717148.3495 0.017541162 0.026033461 5.19E-06 5.285054721 0.123450226 SST(ph)PPRQSPS(ph)R ddPTM_HeLa_A486_30min_R1 2 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.005)S(0.049)T(0.946)PPRQS(0.43)PS(0.57)R;S(0.013)S(0.013)T(0.974)PPRQS(0.039)PS(0.961)R ; 153.05 8.02E-06 444490000 530610 561760 400110 211720 555370 562130 605830 608230 482850 601560 TRUE FALSE FALSE 493416.9791 517244.0917 555043.3073 492894.8597 485710.316 492780.1159 454244.9262 469749.3066 524703.8268 450925.4605 1.094231802 1.14707227 1.230898133 1.093073918 1.077141032 1.092819455 1.007361451 1.041744917 1.163615437 1 18.78252945 -5.487022285 10.48333897 1.066346288 1.157358693 0.382305195 0.053163826 0.772135951 222.8612016 0.015074256 0.022122205 3.26E-06 5.487022285 0.091012405 SST(ph)PSDINSPR ddPTM_HeLa_A486_30min_R1 1 SSTPSDINSPR 11 0 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7;Q674X7-5 A0A1B0GWK2 KAZN Kazrin 1 0 S(0.088)S(0.088)T(0.822)PS(0.002)DINSPR 122.55 0.00058336 0 316810 330620 253510 93439 330110 265710 279940 295500 259540 323760 TRUE FALSE FALSE 294603.255 304420.4671 351675.8612 217530.7141 288704.5256 232929.4017 209896.0511 228221.1007 282037.1362 242688.3887 1.21391574 1.254367664 1.449084001 0.896337544 1.189609965 0.959787994 0.864878836 0.940387391 1.162136918 1 17.88874556 -5.266677278 24.99958706 0.999753336 1.30064699 0.602076903 0.113189754 294.5210316 1405698.842 0.03218619 0.049403005 5.41E-06 5.266677278 0.300893654 SST(ph)PSPSPLNLSSSR ddPTM_HeLa_A486_30min_R1 1 SSTPSPSPLNLSSSR 15 0 P37275-3;P37275-4;P37275-5;P37275;P37275-2 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 SS(0.017)T(0.983)PSPSPLNLSSSR 128.76 0.00010325 281730000 140900 122780 113560 77122 168780 148600 140250 156720 124180 167580 TRUE FALSE FALSE 131023.6376 113050.4656 157533.4732 179543.9135 147610.0386 130267.2429 105157.9666 121038.2772 134944.0224 125616.8772 1.043041672 0.899962395 1.254078884 1.429297699 1.175081262 1.037020229 0.837132469 0.963551076 1.074250732 1 16.93867078 -6.414736872 4.195173301 0.962556372 1.164896009 0.297356468 0.139058633 0.327316497 9.7968918 0.057601705 0.049760445 3.85E-07 6.414736872 0.202339638 SST(ph)PVPSK ddPTM_HeLa_A485_30min_R1 1 SSTPVPSK 8 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 SS(0.028)T(0.972)PVPSK 87.806 0.02099 400080000 928530 899050 662520 1163900 1309600 939220 1264300 1356300 875020 1655900 TRUE FALSE FALSE 1135078.295 1004186.077 907613.7178 1227480.91 1179211.626 988396.1069 994171.9766 1023665.298 1050628.488 1243114.605 0.913092237 0.807798471 0.730112666 0.98742377 0.948594459 0.795096529 0.799742818 0.823468162 0.845158189 1 20.24552788 -11.23562174 2.134503892 1.482885785 0.848344076 0.268581659 0.074185297 10166879.01 1611998.665 23707897.82 0.019648864 5.81E-12 11.23562174 -0.634541709 SST(ph)PVPSK ddPTM_HeLa_A486_30min_R1 1 SSTPVPSK 8 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 S(0.003)S(0.013)T(0.985)PVPSK 95.502 0.0052789 0 1114100 1085400 669150 480510 1090700 1241600 1387800 1283600 879110 1366500 TRUE FALSE FALSE 1036007.343 999388.951 928262.8005 1118651.564 953894.2356 1088424.016 1040557.761 991352.3008 955311.9626 1024319.506 1.011410344 0.975661349 0.906223884 1.092092416 0.931246774 1.062582534 1.015852725 0.967815506 0.932630842 1 19.96623436 -4.23576829 21.0292304 0.988379126 1.0114106 0.016468064 0.055550429 5218.857102 4274573.479 0.013432827 0.656824456 5.81E-05 4.23576829 0.023031474 SSTFPQTDVLSSS(ph)LEAEHR ddPTM_HeLa_A485_30min_R1 2 SSTFPQTDVLSSSLEAEHR 19 0 D4PHA4;Q86WP2-3;Q86WP2;Q86WP2-2;Q86WP2-4 D4PHA4 GPBP1 Vasculin 1 0 SSTFPQTDVLSS(0.288)S(0.711)LEAEHR;SSTFPQTDVLSS(0.165)S(0.835)LEAEHR ; 187.95 1.98E-18 1718250000 784940 1097480 1007100 731520 1297440 897070 1125030 1250700 888480 944540 TRUE FALSE FALSE 959547.195 1225820.739 1379668.199 771481.0853 1168262.318 944039.1981 884658.1498 943963.864 1066789.786 709083.561 1.353221606 1.72873947 1.945706084 1.087997421 1.647566496 1.331351127 1.247607755 1.331244886 1.504462725 1 19.43559612 -5.263325297 24.9997577 1.3336859 1.681174088 0.365651083 0.220591998 187.0128421 2479055.62 0.059763455 0.093963805 5.45E-06 5.263325297 0.347488188 SSTFPQTDVLSSS(ph)LEAEHR ddPTM_HeLa_A486_30min_R1 4 SSTFPQTDVLSSSLEAEHR 19 0 D4PHA4;Q86WP2-3;Q86WP2;Q86WP2-2;Q86WP2-4 D4PHA4 GPBP1 Vasculin 1 0 SSTFPQTDVLSS(0.051)S(0.949)LEAEHR;SSTFPQTDVLSS(0.249)S(0.751)LEAEHR;SSTFPQTDVLSS(0.248)S(0.751)LEAEHR;SSTFPQTDVLS(0.001)S(0.09)S(0.909)LEAEHR ;;; 189.62 1.61E-18 2463900000 1746750 1855860 1567090 417872 2056030 1489200 1773120 1800390 1447310 1595440 TRUE FALSE FALSE 1624311.845 1708794.895 2173909.216 972827.1341 1798143.546 1305477.645 1329466.622 1390480.499 1572763.996 1195931.439 1.35819813 1.428840181 1.817754049 0.813447245 1.503550694 1.091599068 1.111657891 1.162675763 1.315095451 1 20.18970325 -5.256227257 24.99999607 1.160981741 1.524321702 0.434120815 0.204417705 430.3998737 2064410.743 0.053715346 0.089550531 5.54E-06 5.256227257 0.363339961 SSTGS(ph)YEER ddPTM_HeLa_A485_30min_R1 1 SSTGSYEER 9 0 F8W6C0;G3V0F5;Q9UHY8;Q9UHY8-2;Q7Z674;H7C434 F8W6C0 FEZ2;DKFZp779C2259 Fasciculation and elongation protein zeta-2 1 0 SST(0.041)GS(0.959)YEER 109.16 0.0014085 0 214690 269390 254740 227530 360790 291870 299510 346200 240870 309670 TRUE FALSE FALSE 262447.0498 300892.8171 348978.9266 239959.3878 324868.4808 307151.8619 235517.2417 261293.9072 289210.3996 232474.9681 1.12892606 1.294302004 1.50114625 1.032194519 1.397434242 1.321225526 1.013086457 1.123965773 1.244049637 1 17.82671586 -6.750283708 24.99562112 1.105605941 1.284125601 0.29991471 0.137182068 282.9344647 633949.6261 0.05204821 0.039938436 1.78E-07 6.750283708 0.17851966 SSTIYS(ph)NSAESFLPGICK ddPTM_HeLa_A485_30min_R1 1 SSTIYSNSAESFLPGICK 18 0 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 S(0.004)S(0.004)T(0.004)IYS(0.91)NS(0.078)AESFLPGICK 164.53 3.33E-12 0 45328 44245 34066 41811 58698 61191 56875 75971 43470 54412 TRUE FALSE FALSE 55411.05722 49419.06787 46668.431 44095.02906 52853.82102 64394.86614 44723.19162 57338.99313 52194.03027 40848.08978 1.356515262 1.209825677 1.142487476 1.079488155 1.293911693 1.57644743 1.09486617 1.403712963 1.27775939 1 15.31798099 -4.248968662 22.33516319 1.244575341 1.356515553 0.045919181 0.161279978 1741.747908 3119222.962 0.0402305 0.597628417 5.64E-05 4.248968662 0.111940212 SSTKQPTVGGTS(ph)STPR ddPTM_HeLa_A485_30min_R1 1 SSTKQPTVGGTSSTPR 16 1 F8W108;F8WCU9;Q68CP9-3;Q68CP9;A0A087WY37;F8VWP4 F8W108 ARID2 AT-rich interactive domain-containing protein 2 1 0 SSTKQPT(0.002)VGGT(0.052)S(0.343)S(0.343)T(0.259)PR 76.768 0.0027385 252900000 113380 178380 121120 96199 194890 168370 222500 281390 106940 127620 TRUE FALSE FALSE 138600.9898 199239.9893 165927.3282 101454.1078 175486.0673 177185.5929 174961.0573 212378.6613 128401.8771 95806.68267 1.446673509 2.0796043 1.731897229 1.058946046 1.831668339 1.849407452 1.82618845 2.216741624 1.34021838 1 16.54783867 SSTKQPTVGGTS(ph)STPR ddPTM_HeLa_A486_30min_R1 1 SSTKQPTVGGTSSTPR 16 1 F8W108;F8WCU9;Q68CP9-3;Q68CP9;A0A087WY37;F8VWP4 F8W108 ARID2 AT-rich interactive domain-containing protein 2 1 0 SSTKQPT(0.002)VGGT(0.132)S(0.602)S(0.132)T(0.132)PR 102.98 0.00017106 233580000 243770 160690 108060 86101 221440 163040 216870 231490 115590 240690 TRUE FALSE FALSE 226682.9818 147956.3392 149903.7259 200447.4793 193664.9304 142925.7825 162606.8322 178784.7804 125609.4343 180419.6574 1.256420642 0.820067732 0.830861382 1.111006873 1.073413691 0.792185201 0.901270042 0.990938476 0.696207033 1 17.46099701 -6.257641916 24.98849974 0.877125674 1.002069273 0.188019846 0.145831959 680.0368735 4474864.273 0.049277341 0.047490285 5.53E-07 6.257641916 0.1249436 SSTKQPTVGGTSST(ph)PR ddPTM_HeLa_A486_30min_R1 1 SSTKQPTVGGTSSTPR 16 1 F8W108;F8WCU9;Q68CP9-3;Q68CP9;A0A087WY37;F8VWP4 F8W108 ARID2 AT-rich interactive domain-containing protein 2 1 0 SSTKQPT(0.001)VGGT(0.018)S(0.018)S(0.117)T(0.845)PR 58.997 0.035015 102790000 166480 126820 77638 53743 153220 120780 160650 163650 84137 186920 TRUE FALSE FALSE 154810.6117 116770.3213 107701.5128 125116.42 134001.7189 105879.3916 120453.6708 126390.4675 91430.0629 140114.0154 1.104890266 0.833395011 0.768670518 0.892961491 0.956376266 0.755665958 0.859683241 0.902054424 0.652540452 1 17.09624175 -4.260023775 24.29198356 0.843732932 1.104890391 0.390974893 0.096560227 82.13772432 1409274.611 0.022785073 0.138625612 5.50E-05 4.260023775 0.261157459 SSTLSSSSMSLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SSTLSSSSMSLSPK 14 0 O15119-3;O15119-2;O15119 O15119-3 TBX3 T-box transcription factor TBX3 1 0 SSTLSSSSMS(0.003)LS(0.997)PK;SSTLSS(0.001)S(0.001)S(0.001)MS(0.009)LS(0.987)PK ; 101.62 0.00058358 227310000 193923 183209 132547 306190 249360 197897 343820 310060 169175 396930 TRUE FALSE FALSE 237060.5023 204633.6988 181581.651 322916.3844 224532.8428 208258.5809 270360.0482 234017.2988 203126.8707 297982.656 0.795551344 0.686730233 0.609369866 1.0836751 0.753509771 0.698894975 0.90730129 0.785338657 0.681673469 1 18.18486884 -11.37771512 2.342760354 2.685464235 0.780322177 0.213237788 0.127854916 16749135.61 2663141.378 148545705.5 0.034026238 4.19E-12 11.37771512 -1.905142058 SSTLSSSSMSLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SSTLSSSSMSLSPK 14 0 O15119-3;O15119-2;O15119 O15119-3 TBX3 T-box transcription factor TBX3 1 0 SSTLSSSSMS(0.002)LS(0.998)PK;SSTLSSSSMSLS(1)PK ; 180.85 2.52E-17 124900000 362600 343170 204346 179786 358900 392620 500910 458740 307970 639400 TRUE FALSE FALSE 337183.6125 315975.9594 283474.2438 418550.8939 313883.4154 344182.5363 375577.0199 354294.9162 334665.0876 479290.0782 0.703506348 0.659258294 0.591446092 0.873272602 0.65489237 0.718109037 0.783611089 0.7392077 0.698251649 1 18.87053955 -14 0.220208082 2.444913716 0.678527205 0.594113716 0.071684153 106.5876234 1.066732429 68.33562385 0.13687635 1.00E-14 14 -1.76638651 SSTPEEVK ddPTM_HeLa_A485_30min_R1 2 SSTPEEVK 8 0 P23528;E9PP50;E9PK25;G3V1A4;E9PS23;E9PQB7;E9PLJ3 P23528 CFL1 Cofilin-1 0 0 ; ; 164.53 0.00017214 92674000 57501 52248 41097 81943 73732 57794 84289 78410 52583 111741 FALSE FALSE TRUE 70291.89907 58357.9491 56300.49049 86419.3386 66390.98319 60820.00447 66279.96657 59179.82456 63135.92578 83886.02514 0.837945283 0.69568142 0.671154586 1.03019947 0.791442711 0.725031427 0.790119289 0.705478945 0.752639378 1 16.35614287 -11.33517721 2.211605512 2.230960988 0.776711334 0.320041643 0.097177684 13247396.97 1204875.928 81915469.52 0.02582808 4.62E-12 11.33517721 -1.454249654 SSTPGS(ph)PTHVSSGSNASR ddPTM_HeLa_A485_30min_R1 2 SSTPGSPTHVSSGSNASR 18 0 Q14CZ0 Q14CZ0 C16orf72 UPF0472 protein C16orf72 1 0 SSTPGS(0.908)PT(0.092)HVSSGSNASR;S(0.001)S(0.001)T(0.003)PGS(0.994)PT(0.002)HVSSGSNASR ; 193.3 1.20E-19 127380000 85224 184809 207380 33426.7 242440 116224 130219 152066 143519 66872 TRUE FALSE FALSE 104181.7848 206420.8049 284098.4918 35252.71598 218301.8223 122309.3089 102396.6469 114771.5751 172321.9469 50202.04109 2.07524998 4.111801043 5.659102412 0.702216787 4.348465075 2.436341357 2.03969091 2.286193401 3.43256854 1 15.6154584 -8.733124086 0.178164222 2.35E-11 4.066133627 0.181373525 1.336890076 15.9371924 1.217017752 17.61199337 6.89624561 1.85E-09 8.733124086 4.066133627 SSTPGS(ph)PTHVSSGSNASR ddPTM_HeLa_A486_30min_R1 1 SSTPGSPTHVSSGSNASR 18 0 Q14CZ0 Q14CZ0 C16orf72 UPF0472 protein C16orf72 1 0 S(0.025)S(0.025)T(0.084)PGS(0.824)PT(0.041)HVSSGSNASR 53.304 0.027267 91388000 114840 145860 121400 8370.4 170900 104220 111380 110540 124600 55129 TRUE FALSE FALSE 106790.309 134301.5224 168409.3312 19486.71422 149464.1284 91362.39603 83511.54594 85372.45507 135400.4283 41324.33957 2.584198807 3.249937538 4.075306053 0.47155537 3.616854618 2.210861613 2.020880353 2.065912147 3.276529758 1 15.33470414 -9.816322424 0.161792399 2.22E-16 3.252413452 0.189140238 0.976065662 40.42490028 1.509161427 28.04092431 5.527210207 1.53E-10 9.816322424 3.252413452 SSTPLHS(ph)PSPIR ddPTM_HeLa_A485_30min_R1 4 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 SSTPLHS(0.999)PS(0.001)PIR;SSTPLHS(0.996)PS(0.004)PIR;SSTPLHS(0.98)PS(0.02)PIR;SSTPLHS(0.995)PS(0.004)PIR ;;; 154.13 5.62E-08 2202380000 980180 1432460 1430980 770370 2020290 1432500 1748840 2041680 1372970 1301880 TRUE FALSE FALSE 1198217.659 1599973.736 1960359.05 812453.3624 1819142.834 1507503.485 1375186.047 1540954.779 1648512.485 977345.2753 1.225992175 1.6370609 2.005799894 0.831285916 1.861310306 1.542447202 1.407062665 1.576673892 1.686724771 1 19.8985088 -10.31004705 4.829185365 0.999752653 1.534844528 0.206863697 0.311514824 0.000795862 0.000113706 0.287364089 0.069664133 4.90E-11 10.31004705 0.535091874 SSTPLHS(ph)PSPIR ddPTM_HeLa_A486_30min_R1 3 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 SSTPLHS(0.996)PS(0.004)PIR;SSTPLHS(0.85)PS(0.15)PIR;S(0.003)S(0.003)T(0.001)PLHS(0.99)PS(0.005)PIR ;; 128.73 2.44E-05 1504140000 1056580 1320340 1187890 130070 1825120 1027140 1213820 1277120 1177360 782220 TRUE FALSE FALSE 982519.1982 1215711.45 1647872.821 302809.5334 1596196.431 900421.91 910109.3975 986347.6553 1279414.513 586347.0206 1.67566162 2.073365101 2.810405379 0.516433993 2.722272605 1.535646773 1.552168538 1.682190956 2.182009063 1 19.16139523 -11.22776794 0.303804361 2.82E-20 1.921737062 0.139926748 0.624472886 80.85200468 3.336038998 57.57264886 0.618293332 5.92E-12 11.22776794 1.921737062 SSTPLHSPS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.001)S(0.001)T(0.001)PLHS(0.081)PS(0.916)PIR 147.12 1.24E-07 3968500000 361530 390440 358220 67381 373090 323250 395220 409230 340910 314300 TRUE FALSE FALSE 336188.6139 359500.1124 496932.3775 156866.3732 326293.5733 283370.7016 296331.7758 316057.2624 370460.3533 235597.2343 1.42696333 1.525909731 2.109245378 0.665824341 1.384963513 1.202776011 1.257789705 1.341515164 1.572430824 1 17.84596308 -5.251479354 24.99608491 1.227622617 1.671226444 0.378744658 0.282527772 799.9438398 2007567.16 0.075970524 0.129626442 5.60E-06 5.251479354 0.443603826 SSTPPRQS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSTPPRQS(0.997)PS(0.002)R;SST(0.004)PPRQS(0.975)PS(0.021)R ; 139.19 0.00012842 324990000 147349 243020 233520 158967 274600 229460 264930 328090 206770 205698 TRUE FALSE FALSE 180126.2767 271439.075 319908.7656 167650.9647 247259.8598 241474.1708 208325.5412 247625.4131 248266.8424 154421.2742 1.166460241 1.757782899 2.071662517 1.085672719 1.601203339 1.563736422 1.349072803 1.603570586 1.607724348 1 17.236512 -10.74453125 2.646572273 0.885735799 1.542745852 0.260795042 0.269404804 39378279.16 30449864.79 29497219.58 0.068084005 1.80E-11 10.74453125 0.657010054 SSTPPRQS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 SSTPPRQSPSR 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.003)S(0.01)T(0.01)PPRQS(0.916)PS(0.06)R;SSTPPRQS(0.994)PS(0.006)R;S(0.011)S(0.011)T(0.01)PPRQS(0.918)PS(0.049)R ;; 82.202 0.0027918 416780000 207284 214771 211034 80289 294661 186925 231811 251609 176687 228173 TRUE FALSE FALSE 192754.462 197751.7638 292752.0165 186916.8496 257701.8698 163864.094 173809.436 194323.1233 192002.3714 171036.9956 1.126975256 1.156192922 1.711629787 1.092844556 1.506702505 0.95806228 1.016209594 1.13614673 1.122578017 1 17.38394889 -6.274113792 24.86796887 1.053209134 1.319094581 0.360154742 0.181345063 848.256072 1664325.196 0.062997244 0.055929065 5.32E-07 6.274113792 0.265885447 SSTPRES(ph)PCGK ddPTM_HeLa_A485_30min_R1 1 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 S(0.029)S(0.029)T(0.029)PRES(0.914)PCGK 48.704 0.025493 162360000 199690 193770 156160 253440 294140 254400 369740 355510 215810 345720 TRUE FALSE FALSE 244110.3516 216429.7159 213930.0824 267284.7855 264854.3888 267719.9906 290742.0285 268320.6151 259121.0875 259538.3665 0.940555937 0.83390259 0.824271514 1.029846913 1.020482607 1.031523756 1.12022755 1.033837959 0.998392226 1 17.9855883 -5.271452989 23.77522914 1.037875222 0.863009273 0.759336998 0.0430816 157.0546769 372893.6331 0.012450428 0.018741708 5.35E-06 5.271452989 -0.174865949 SSTPRES(ph)PCGK ddPTM_HeLa_A486_30min_R1 4 SSTPRESPCGK 11 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 S(0.002)S(0.004)T(0.004)PRES(0.991)PCGK;S(0.04)S(0.04)T(0.04)PRES(0.88)PCGK;S(0.02)S(0.02)T(0.02)PRES(0.94)PCGK;S(0.008)S(0.041)T(0.041)PRES(0.909)PCGK ;;; 56.29 0.013204 748600000 1035070 985380 636102 466223 1136990 1194610 1453300 1339990 834560 1401520 TRUE FALSE FALSE 962516.9381 907294.9001 882417.7298 1085390.706 994378.1122 1047231.164 1089668.969 1034903.529 906900.3328 1050570.27 0.916185205 0.863621336 0.839941654 1.033144319 0.946512709 0.996821626 1.037216643 0.985087394 0.863245762 1 20.00274123 -5.255159715 24.97642212 0.981321823 0.872286589 0.494202334 0.049613613 425.9102235 1693988.438 0.013702468 0.022998566 5.56E-06 5.255159715 -0.109035234 SSTRAPS(ph)PTK ddPTM_HeLa_A485_30min_R1 5 SSTRAPSPTK 10 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BTV0;H3BNI3;H3BP82;H3BTR6;H3BUG0;H3BTY0;H3BNU7 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 1 0 SSTRAPS(0.993)PT(0.007)K;SSTRAPS(0.94)PT(0.059)K;SSTRAPS(0.754)PT(0.246)K;SSTRAPS(0.937)PT(0.063)K;SSTRAPS(0.807)PT(0.193)K ;;;; 71.879 0.0062161 3252700000 541733 3247500 858180 311531 2008320 4061280 5500620 18271700 875105 667477 TRUE FALSE FALSE 662239.6369 3627266.876 1175656.494 328549.1497 1808364.609 4273922.341 4325367.601 13790536.93 1050730.547 501087.2679 1.321605396 7.238792737 2.346211068 0.655672516 3.608881576 8.529297419 8.631964686 27.52122796 2.096901306 1 18.93470236 -2.024216568 13.74351344 6.843991971 4.075485744 0 7.680600185 0 0 1.830816941 0 0.009457654 2.024216568 -2.768506226 SSTRAPS(ph)PTK ddPTM_HeLa_A486_30min_R1 4 SSTRAPSPTK 10 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BTV0;H3BNI3;H3BP82;H3BTR6;H3BUG0;H3BTY0;H3BNU7 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 1 0 SSTRAPS(0.796)PT(0.204)K;SSTRAPS(0.838)PT(0.162)K;S(0.001)S(0.001)T(0.001)RAPS(0.814)PT(0.184)K;SSTRAPS(0.841)PT(0.158)K ;;; 83.204 0.0027218 563017000 1266990 335759 352481 571724 1464760 330046 1056180 1335720 200245 1352680 TRUE FALSE FALSE 1178180.544 309152.234 488971.083 1331002.365 1281036.142 289328.2802 791912.5929 1031605.715 217602.3978 1013960.124 1.161959446 0.30489585 0.482238967 1.312677229 1.263398937 0.285344831 0.781009602 1.017402648 0.214606465 1 19.95156949 -10.13615879 12.87411527 0.999992362 0.76228147 0.031869464 0.399283875 0 0 0.389003461 0.094347198 7.31E-11 10.13615879 -0.237710891 SSTRAPSPT(ph)K ddPTM_HeLa_A485_30min_R1 1 SSTRAPSPTK 10 1 H3BUL0;H3BMM9;H3BTC0;Q15287;H3BTV0;H3BNI3;H3BP82;H3BTR6;H3BUG0;H3BTY0;H3BNU7 H3BUL0 RNPS1 RNA-binding protein with serine-rich domain 1 1 0 SSTRAPS(0.395)PT(0.605)K 73.834 0.013706 1144500000 265940 1451900 395500 129010 986510 1836800 2249900 8447800 210130 272470 TRUE FALSE FALSE 325097.4355 1621687.075 541811.9081 136057.4896 888289.6006 1932972.008 1769190.485 6375963.804 252301.1636 204548.2434 1.58934357 7.928139826 2.648822102 0.66516088 4.342689947 9.449956525 8.649257775 31.1709536 1.233455538 1 17.64208162 -2.657878257 12.80168176 7.496897776 4.728580491 0 8.730717843 0 0 2.057029094 0 0.002198476 2.657878257 -2.768317285 SSTS(ph)PCGT(ph)SKSPNREWEGK ddPTM_HeLa_A485_30min_R1 1 SSTSPCGTSKSPNREWEGK 19 2 H0Y459 H0Y459 NCOR1 2 0 S(0.021)S(0.025)T(0.267)S(0.687)PCGT(0.637)S(0.217)KS(0.147)PNREWEGK 156.41 2.80E-08 469600000 427510 332190 220590 654420 588770 496330 811610 797520 367890 973970 TRUE FALSE FALSE 522608.1246 371036.7308 302195.4205 690169.3075 530149.9915 522317.0713 638202.8933 601926.9695 441722.1485 731177.2036 0.714748931 0.507451175 0.413299839 0.943915243 0.725063622 0.71435087 0.872842985 0.823229946 0.604124618 1 19.47986157 -5.259228038 24.99993444 0.799419553 0.541395102 0.47247222 0.128680702 174.8988261 1977274.862 0.03463204 0.056475138 5.51E-06 5.259228038 -0.258024451 SSTS(ph)PCGT(ph)SKSPNREWEVLQPAPHQVITNLPEGVR ddPTM_HeLa_A485_30min_R1 2 SSTSPCGTSKSPNREWEVLQPAPHQVITNLPEGVR 35 2 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 2 0 S(0.219)S(0.249)T(0.249)S(0.282)PCGT(0.39)S(0.344)KS(0.267)PNREWEVLQPAPHQVITNLPEGVR;S(0.211)S(0.241)T(0.24)S(0.273)PCGT(0.428)S(0.379)KS(0.228)PNREWEVLQPAPHQVITNLPEGVR ; 184.18 5.55E-21 645890000 151652 137079 121449 197449 240445 187919 260740 311010 148762 283010 TRUE FALSE FALSE 185386.4642 153109.1966 166378.039 208235.1389 216505.4515 197758.1483 205030.769 234734.3099 178617.1689 212460.8154 0.87256779 0.720646752 0.78309988 0.980110796 1.019037092 0.930798217 0.965028627 1.104835776 0.840706408 1 17.69683726 -5.261956357 22.57740273 0.980885456 0.78495896 0.582445204 0.071701015 7.541027526 329372.752 0.018898597 0.030093208 5.47E-06 5.261956357 -0.195926496 SSTS(ph)PCGTSK ddPTM_HeLa_A485_30min_R1 1 SSTSPCGTSK 10 0 H0Y459;O75376-2;O75376;A0A088AWL3;O75376-3 H0Y459;O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 SST(0.01)S(0.867)PCGT(0.105)S(0.018)K 99.215 0.00083037 0 478620 346460 112200 913810 128650 435030 302210 403140 359250 809510 TRUE FALSE FALSE 585087.3678 386975.4832 153707.449 963729.1264 115841.1543 457807.4981 237640.3647 304269.2829 431348.1798 607714.0549 0.962767543 0.636772311 0.252927257 1.585826621 0.190617863 0.753327152 0.391039771 0.500678371 0.709788059 1 19.21303313 -4.260069268 22.65480559 0.648042155 0.962767824 0.047708874 0.38359583 103.9014984 1717258.38 0.090593794 0.54519709 5.49E-05 4.260069268 0.314725669 SSTS(ph)PCGTSK ddPTM_HeLa_A486_30min_R1 1 SSTSPCGTSK 10 0 H0Y459;O75376-2;O75376;A0A088AWL3;O75376-3 H0Y459;O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 SST(0.018)S(0.981)PCGT(0.001)SK 91.961 0.0010782 0 395520 137550 192020 100460 111520 744800 206120 186290 569800 573080 TRUE FALSE FALSE 367796.0905 126650.0371 266375.2865 233875.957 97532.12172 652914.1486 154546.5959 143875.8337 619190.7228 429577.0379 0.856181914 0.294824969 0.620087349 0.544433097 0.227042214 1.51990002 0.359764564 0.334924405 1.44139623 1 18.71255735 SSTS(ph)PCGTSKS(ph)PNREWEGK ddPTM_HeLa_A486_30min_R1 1 SSTSPCGTSKSPNREWEGK 19 2 H0Y459 H0Y459 NCOR1 2 0 S(0.039)S(0.047)T(0.409)S(0.505)PCGT(0.274)S(0.031)KS(0.695)PNREWEGK 155.05 4.85E-09 473420000 516470 473070 230500 338320 538920 653180 920410 872040 402040 945450 TRUE FALSE FALSE 480268.1201 435582.2103 319755.773 787626.0577 471323.6284 572597.2926 690113.6829 673495.5285 436889.1509 708703.1662 0.677671757 0.614618688 0.451184344 1.111362409 0.665050829 0.807950804 0.973769719 0.950321038 0.616462818 1 19.43482197 -5.246691443 24.98917045 0.865493561 0.584504309 0.439547909 0.151765938 776.1225464 1315074.192 0.040206486 0.069257298 5.67E-06 5.246691443 -0.280989253 SSTSPCGTSKS(ph)PNREWEGK ddPTM_HeLa_A485_30min_R1 1 SSTSPCGTSKSPNREWEGK 19 2 H0Y459 H0Y459 NCOR1 1 0 S(0.001)S(0.001)T(0.001)S(0.001)PCGT(0.038)S(0.184)KS(0.775)PNREWEGK 96.708 0.00016415 297630000 74316 168780 159530 103500 206010 141450 200870 243910 122140 159100 TRUE FALSE FALSE 90847.33781 188517.3528 218546.7856 109153.9429 185498.9211 148856.1033 157952.4835 184090.6901 146652.3777 119439.298 0.760615135 1.57835282 1.829772857 0.91388634 1.553081139 1.246290842 1.322449865 1.541290791 1.227840251 1 16.86591807 -8.01062312 22.94340154 0.999999966 1.357818287 0.106357583 0.301758647 354.9223291 766552.489 0.279660505 0.072208032 9.76E-09 8.01062312 0.357818321 SSTSPCGTSKS(ph)PNREWEGK ddPTM_HeLa_A486_30min_R1 2 SSTSPCGTSKSPNREWEGK 19 2 H0Y459 H0Y459 NCOR1 1 0 SSTSPCGT(0.019)S(0.284)KS(0.697)PNREWEGK;SSTSPCGT(0.015)S(0.009)KS(0.976)PNREWEGK ; 139.75 2.71E-07 385840000 258250 246380 187436 111466 342770 302210 402010 388140 214010 354500 TRUE FALSE FALSE 240148.0086 226855.9515 260016.2389 259498.4812 299776.5904 264926.4028 301422.846 299768.995 232560.5591 265730.8926 0.903726346 0.853705602 0.978494583 0.976546154 1.128120963 0.99697254 1.134316161 1.12809238 0.875173213 1 18.01960643 -5.113225246 1.752216303 1.050577837 0.877784964 0.375114698 0.078285469 0.358510937 2.12210758 0.023442997 0.058672533 7.71E-06 5.113225246 -0.172792872 SSVAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SSVASPR 7 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.001)S(0.001)VAS(0.998)PR;SSVAS(1)PR;SSVAS(1)PR;SSVAS(1)PR ;;; 117.89 0.0022729 7695280000 4327330 7085660 5300990 6912860 5581350 5476000 6906650 8840940 7763830 8256980 TRUE FALSE FALSE 5289929.629 7914266.3 7262046.794 7290492.038 5025651.197 5762714.892 5430987.805 6672685.603 9321959.467 6198666.844 0.853397958 1.276769102 1.171549783 1.176138712 0.810763237 0.929670046 0.87615417 1.076471082 1.503865218 1 22.56352654 -10.45140857 5.816266001 0.999955606 1.06887806 0.011017191 0.205939992 0.00012208 1.15E-05 0.205331632 0.049768176 3.54E-11 10.45140857 0.068922455 SSVAS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SSVASPR 7 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 S(0.002)S(0.001)VAS(0.998)PR;SSVAS(1)PR;SSVAS(1)PR;SSVAS(1)PR ;;; 96.624 0.0053187 6542760000 4779320 3131930 3786250 1445044 3428820 5409940 3683790 3523480 4622380 5285910 TRUE FALSE FALSE 4444314.348 2883744.461 5252387.399 3364135.46 2998745.423 4742516.607 2762066.779 2721260.521 5023051.62 3962283.731 1.121654745 0.727798577 1.325595984 0.849039516 0.756822486 1.196914943 0.6970896 0.686790928 1.267716287 1 21.91790076 SSVAS(ph)PRR ddPTM_HeLa_A485_30min_R1 1 SSVASPRR 8 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 SSVAS(1)PRR 72.848 0.0085872 49156000 19438 42644 34073 24894 53933 38073 51437 85176 38781 34800 TRUE FALSE FALSE 23761.91604 47630.84485 46678.0206 26253.89619 48563.24115 40066.44341 40447.06475 64286.45245 46563.99098 26125.00045 0.90954701 1.823190202 1.786718461 1.004933808 1.858880012 1.533643741 1.548212978 2.460725411 1.782353691 1 14.67314344 -7.038558613 24.97480098 1.873817604 1.512762989 0.04037641 0.450532271 1175.79574 761570.2461 0.201285353 0.116243062 9.15E-08 7.038558613 -0.361054615 SSVASGPIS(ph)PTNYR ddPTM_HeLa_A485_30min_R1 1 SSVASGPISPTNYR 14 0 Q9BYK8 Q9BYK8 HELZ2 Helicase with zinc finger domain 2 1 0 SSVASGPIS(0.955)PT(0.045)NYR 122.75 9.01E-05 0 59004 78715 56109 114960 98637 75581 152650 119270 69955 213200 TRUE FALSE FALSE 72129.23624 87920.03452 76866.05399 121239.9737 88816.35394 79538.30429 120035.0805 90018.84549 83994.32683 160053.1637 0.450657985 0.549317692 0.480253262 0.75749814 0.554917828 0.496949279 0.749970058 0.562430904 0.524790169 1 17.28819167 -14 0.304962709 4.627879966 0.553827799 0.628338579 0.099171097 187.6879375 1.723370493 436.4712811 0.098085927 1.00E-14 14 -4.074052167 SSVKT(ph)PESIVPIAPELQPSTSR ddPTM_HeLa_A485_30min_R1 1 SSVKTPESIVPIAPELQPSTSR 22 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.114)S(0.114)VKT(0.748)PES(0.024)IVPIAPELQPSTSR 78.221 0.0053046 135560000 121840 134110 83994 198370 191160 149920 234550 238570 112830 277940 TRUE FALSE FALSE 148942.8877 149792.9979 115066.8759 209206.4508 172127.4392 157769.5794 184436.4764 180060.3334 135473.9461 208654.6731 0.713824835 0.71789908 0.551470399 1.002644454 0.824939296 0.756127706 0.883931683 0.862958547 0.649273482 1 17.67075771 -13.91471087 0.030088822 2.131610459 3.93E-19 0.241046325 0.121070632 2186.546608 5.008131681 275.6023848 112.5315401 1.22E-14 13.91471087 -2.131610459 SSVKT(ph)PESIVPIAPELQPSTSR ddPTM_HeLa_A486_30min_R1 2 SSVKTPESIVPIAPELQPSTSR 22 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.067)S(0.067)VKT(0.742)PES(0.124)IVPIAPELQPSTSR;S(0.082)S(0.082)VKT(0.816)PES(0.019)IVPIAPELQPSTSR ; 108.73 0.00018633 473620000 583720 492400 289880 284480 482580 580280 803390 715240 454910 876320 TRUE FALSE FALSE 542804.2423 453380.4307 402129.2993 662283.8168 422050.3165 508690.9535 602373.3246 552395.4656 494341.9651 656883.7681 0.82633225 0.690198864 0.612177251 1.008220707 0.642503799 0.774400249 0.917016608 0.840933347 0.752556219 1 19.32527859 -13.99999968 0.121550586 1.714791415 0.680989657 0.258703575 0.113587713 208.6744953 1.635146201 36.47375896 1.05042633 1.00E-14 13.99999968 -1.033801757 SSVKT(ph)PETVVPTALELQPSTSTDRPVTSEPTSQATR ddPTM_HeLa_A485_30min_R1 2 SSVKTPETVVPTALELQPSTSTDRPVTSEPTSQATR 36 2 Q14676;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.003)S(0.003)VKT(0.907)PET(0.087)VVPTALELQPSTSTDRPVTSEPTSQATR;SSVKT(0.988)PET(0.011)VVPTALELQPSTSTDRPVTSEPTSQATR ; 183 5.76E-21 1405430000 16211.7 16314.6 6083.3 20594.6 28903.3 18727.5 17743.9 33194 16365.1 38216 TRUE FALSE FALSE 19817.93674 18222.45055 8333.765817 21719.63085 26025.58597 19708.04294 13952.77081 25053.11945 19649.42546 28689.45451 0.690774261 0.635161974 0.29048185 0.757059736 0.907148163 0.686943801 0.486337961 0.873251858 0.68490063 1 14.80823292 -14 0.117545671 2.121992769 0.492528173 0.300561416 0.163930677 208.5283461 1.596716586 55.29600298 1.780426971 1.00E-14 14 -1.629464596 SSVKT(ph)PETVVPTALELQPSTSTDRPVTSEPTSQATR ddPTM_HeLa_A486_30min_R1 2 SSVKTPETVVPTALELQPSTSTDRPVTSEPTSQATR 36 2 Q14676;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SSVKT(0.922)PET(0.078)VVPTALELQPSTSTDRPVTSEPTSQATR;S(0.154)S(0.154)VKT(0.679)PET(0.012)VVPTALELQPSTSTDRPVTSEPTSQATR ; 189.18 3.21E-21 988130000 12484.5 3848 4391 2547.8 5133.7 5833.3 14049 12579.2 2925.1 9942.1 TRUE FALSE FALSE 11609.40102 3543.070466 6091.312795 5931.407159 4489.783476 5113.646755 10533.7916 9715.190762 3178.650023 7452.533448 1.557779123 0.475418258 0.817347931 0.795891384 0.602450631 0.686162201 1.413451101 1.303609146 0.42651939 1 12.86351523 -6.707585504 24.99983194 1.061205396 0.795284308 0.071770136 0.363689801 213.5962841 99153.96504 0.135966139 0.105318829 1.96E-07 6.707585504 -0.265921088 SSVLPS(ph)PSAGR ddPTM_HeLa_A485_30min_R1 2 SSVLPSPSAGR 11 0 P35658-4;P35658-3 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SSVLPS(0.994)PS(0.005)AGR;SSVLPS(0.993)PS(0.007)AGR ; 84.718 0.0029067 188290000 341650 397360 363540 386680 550470 352030 537870 516910 310730 536380 TRUE FALSE FALSE 417648.8638 443827.7954 498028.5742 407803.3493 495663.274 370461.7465 422949.6805 390137.012 373090.6608 402670.3373 1.037197988 1.102211299 1.236814655 1.01274743 1.230940618 0.920012507 1.050362148 0.968874476 0.926541208 1 18.61923967 -6.274330289 24.97201097 0.976037976 1.122861634 0.502332169 0.075029705 659.0855932 1276764.424 0.025356991 0.022486724 5.32E-07 6.274330289 0.146823658 SSVLPS(ph)PSAGR ddPTM_HeLa_A486_30min_R1 2 SSVLPSPSAGR 11 0 P35658-4;P35658-3 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 SSVLPS(0.982)PS(0.018)AGR;SSVLPS(0.985)PS(0.015)AGR ; 112.82 0.00042857 176860000 518470 529000 491740 172752 600190 498460 569550 615770 428420 561760 TRUE FALSE FALSE 482127.9304 487080.1134 682154.8973 402175.3864 524908.5737 436965.0732 427042.5659 475572.6132 465555.7905 421091.6396 1.144947762 1.156708107 1.619967801 0.955078061 1.246542378 1.037695913 1.014132141 1.129380326 1.105592576 1 18.68377471 -5.32724295 24.99997369 1.078875662 1.292171961 0.362159377 0.143627145 219.9744887 83571.66975 0.039832529 0.05908117 4.71E-06 5.32724295 0.213296299 SSVPGVR ddPTM_HeLa_A485_30min_R1 2 SSVPGVR 7 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 153.26 0.0028271 163184000 132043 166472 171993 144269 229390 152086 210650 215730 156200 203320 FALSE FALSE TRUE 161415.5098 185939.4523 235620.3679 152150.0502 206551.1262 160048.9878 165642.9066 162821.8792 187547.9072 152636.0658 1.057518804 1.218188187 1.543674273 0.996815853 1.353226218 1.048565992 1.085214728 1.066732678 1.22872603 1 17.21973637 -6.28121647 24.61465057 1.089979098 1.237052695 0.193737171 0.150811212 1184.505012 1474235.088 0.052158381 0.046066104 5.23E-07 6.28121647 0.147073596 SSVPSSENVNK ddPTM_HeLa_A486_30min_R1 1 SSVPSSENVNK 11 0 P46934-3;P46934-2;P46934 P46934-3 NEDD4 E3 ubiquitin-protein ligase NEDD4 0 0 90.657 0.035413 49291000 78769 142670 94315 86809 191050 174750 220680 231760 118420 169560 FALSE FALSE TRUE 73247.69986 131364.3096 130836.2938 202095.7391 167086.7275 153191.1217 165463.5299 178993.3073 128684.7409 127101.0723 0.576294901 1.033542103 1.029387805 1.590039607 1.314597308 1.205270096 1.301826388 1.408275351 1.012459915 1 16.95561668 -4.305520087 1.472538807 1.273441899 0.353627941 0.566420662 0.17571629 0.7309702 1.561179684 0.049159951 0.962673195 4.95E-05 4.305520087 -0.919813958 SSVQGAS(ph)SREGS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 SSVQGASSREGSPAR 15 1 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 SSVQGAS(0.645)S(0.355)REGS(1)PAR;SSVQGAS(0.548)S(0.452)REGS(1)PAR ; 107.33 0.0003099 3757930000 507225 647845 1396150 1236980 4530970 1426840 2689560 4196040 1717220 2222430 TRUE FALSE FALSE 620055.4513 723604.8372 1912643.984 1304553.085 4079850.718 1501547.136 2114913.534 3166954.611 2061850.303 1668419.102 0.371642503 0.433706876 1.146381015 0.781909704 2.445339252 0.899981986 1.267615272 1.898176907 1.235810775 1 20.6700503 -4.93146635 1.459596543 1.441898106 0.304069747 0.399646277 0.464782636 0.453782348 1.749292361 0.140475948 0.526201058 1.17E-05 4.93146635 -1.137828359 SSVQGASS(ph)R ddPTM_HeLa_A485_30min_R1 1 SSVQGASSR 9 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 SSVQGAS(0.063)S(0.937)R 63.944 0.023728 1286700000 1109000 792070 282370 1817600 351040 1611400 612150 763360 873050 1431600 TRUE FALSE FALSE 1355693.224 884695.6964 386830.4134 1916890.886 316089.225 1695770.412 481359.1517 576144.7631 1048263.127 1074728.467 1.261428599 0.823180667 0.35993316 1.783604831 0.294110778 1.577859399 0.447889087 0.536084026 0.975374859 1 20.03554077 SSVQGASS(ph)REGS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 SSVQGASSREGSPAR 15 1 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 SSVQGAS(0.17)S(0.83)REGS(1)PAR;SSVQGAS(0.273)S(0.727)REGS(1)PAR ; 108.37 0.00029139 3919920000 768118 1013508 2160480 1909200 7129410 2503680 4421450 6438780 2622350 3342640 TRUE FALSE FALSE 938983.1991 1132028.944 2959731.457 2013494.762 6419580.908 2634768.813 3476771.088 4859659.109 3148631.591 2509381.365 0.374189118 0.451118734 1.17946658 0.802386911 2.558232478 1.049967474 1.385509248 1.936596477 1.254744152 1 21.25890031 -4.95841583 1.45189084 1.52040242 0.317717195 0.416019131 0.47653556 0.431027928 1.655504838 0.144264402 0.518493645 1.10E-05 4.95841583 -1.202685225 SSVQGASS(ph)REGS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 SSVQGASSREGSPAR 15 1 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 SSVQGAS(0.172)S(0.827)REGS(1)PAR;SSVQGAS(0.172)S(0.828)REGS(1)PAR;S(0.002)S(0.003)VQGAS(0.243)S(0.752)REGS(1)PAR;SSVQGAS(0.446)S(0.553)REGS(1)PAR ;;; 106.42 0.00032593 8674280000 2079690 2748130 5594050 3369720 12971630 5109350 8192230 10592140 3266320 2988880 TRUE FALSE FALSE 1933914.471 2530358.17 7760215.974 7844878.456 11344607.21 4479010.345 6142447.405 8180540.947 3549447.248 2240444.994 0.863183196 1.129399819 3.463694041 3.501482285 5.063550876 1.999161041 2.741619376 3.651301848 1.584259938 1 21.09535388 -4.749199925 20.08982473 3.034725477 0.996267921 0.30636839 1.1106698 22.69689645 37245.15436 0.277811938 0.715902475 1.78E-05 4.749199925 -2.038457557 SSVSGIVATVFGATGFLGR ddPTM_HeLa_A485_30min_R1 2 SSVSGIVATVFGATGFLGR 19 0 F5GY40;A0A3B3ISG8;Q16795 F5GY40 NDUFA9 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial" 0 0 ; ; 236.92 1.46E-36 9054600 10420.8 12410.9 8966 10762.6 13356.1 9272.9 12922.3 13094.1 7660.65 19215.1 FALSE FALSE TRUE 12738.87101 13862.24679 12282.89651 11350.53359 12026.31979 9758.414705 10161.34504 9882.751444 9198.072187 14425.1292 0.883102732 0.960979039 0.851492998 0.786858366 0.83370621 0.676487162 0.70441969 0.685106616 0.637642274 1 13.81629662 -5.428800253 1.116149463 0.724018912 0.925235957 0.289798343 0.099960196 0.561566945 1.393053505 0.036715181 0.081692081 3.73E-06 5.428800253 0.201217044 SSVSGIVATVFGATGFLGR ddPTM_HeLa_A486_30min_R1 2 SSVSGIVATVFGATGFLGR 19 0 F5GY40;A0A3B3ISG8;Q16795 F5GY40 NDUFA9 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial" 0 0 ; ; 162.93 5.14E-14 7052100 8853.16 8116.42 5693.85 4455.03 9768.88 8611.65 9707.97 8328.92 9228.77 9404.15 FALSE FALSE TRUE 8232.599202 7473.24532 7898.661207 10371.53498 8543.575979 7549.23218 7278.933226 6432.606735 10028.72721 7049.289629 1.167862244 1.060141619 1.120490379 1.471287964 1.21197687 1.070920983 1.032576842 0.912518434 1.422657848 1 12.78326217 -6.260292249 23.95967265 1.078819846 1.208177627 0.120061677 0.159613482 128.0963584 2675510.113 0.055308228 0.052409265 5.49E-07 6.260292249 0.12935778 SSVTDENWLSPRPAS(ph)GPSSRPTSPCGK ddPTM_HeLa_A485_30min_R1 1 SSVTDENWLSPRPASGPSSRPTSPCGK 27 2 H3BRS1;Q12968;I3L3K7;H3BR83;Q12968-5;Q12968-6;Q12968-4;Q12968-3;Q12968-2 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 1 0 SSVTDENWLSPRPAS(0.981)GPS(0.009)S(0.009)RPTSPCGK 125.68 3.92E-06 152120000 65723 53104 48170 71856 76571 65552 91868 103560 50949 74967 TRUE FALSE FALSE 80342.85461 59314.05086 65990.08752 75781.31133 68947.32238 68984.20136 72239.65131 78161.74762 61173.99697 56279.10657 1.427578715 1.053926661 1.172550375 1.346526552 1.22509625 1.225751537 1.283596271 1.388823533 1.086975268 1 15.78031181 -7.957406428 6.889909264 1.000261632 1.255558394 0.435858038 0.102880254 0.156023735 17.90685944 0.098091786 0.025408813 1.10E-08 7.957406428 0.255296762 SSYLES(ph)PR ddPTM_HeLa_A485_30min_R1 2 SSYLESPR 8 0 H0YIQ2;P49750-3;P49750-1;P49750;F8VU51 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 SSYLES(1)PR;SSYLES(1)PR ; 95.523 0.0024854 248130000 323760 379190 322410 331630 379530 314530 366830 328400 294110 390090 TRUE FALSE FALSE 395779.295 423532.972 441682.8756 349746.1072 341742.6606 330998.3044 288453.7738 247859.3851 353135.1793 292847.7421 1.351484878 1.446256573 1.508233844 1.194293337 1.166963618 1.130274395 0.984995724 0.846376289 1.20586615 1 18.15979125 -5.742983757 1.178968309 1.009737009 1.442320966 0.736348155 0.101812744 0.23398199 0.686678938 0.042334163 0.063398019 1.81E-06 5.742983757 0.432583957 SSYLES(ph)PR ddPTM_HeLa_A486_30min_R1 1 SSYLESPR 8 0 H0YIQ2;P49750-3;P49750-1;P49750;F8VU51 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 SSYLES(1)PR 94.309 0.0025982 0 190340 193140 130450 39389 157680 166910 167880 168830 156890 210900 TRUE FALSE FALSE 176998.1489 177834.883 180963.7336 91699.58261 137902.3041 146318.3412 125874.6483 130391.0945 170489.3515 158089.2673 1.119608889 1.124901684 1.144693354 0.580049387 0.872306555 0.925542535 0.796225136 0.824794098 1.07843723 1 17.2703799 -5.176459958 24.99999159 0.860448926 1.129253191 0.479070142 0.124796521 69.85583803 20549.55502 0.033285919 0.057652901 6.66E-06 5.176459958 0.268804264 ST(ph)EPKMET(ph)MR ddPTM_HeLa_A485_30min_R1 1 STEPKMETMR 10 1 Q8WTQ4 Q8WTQ4 C16orf78 Uncharacterized protein C16orf78 2 0 S(0.457)T(0.543)EPKMET(1)MR 44.299 0.0095254 0 28017 81093 54814 21418 36758 46240 33809 39066 36527 23520 TRUE FALSE FALSE 34249.28499 90576.12093 75091.9796 22588.01111 33098.24445 48661.0549 26585.43096 29485.00225 43857.63385 17656.89685 1.93971145 5.129787056 4.252841268 1.279274116 1.874522161 2.755923382 1.505668362 1.669885852 2.483881184 1 14.1079442 -5.257494205 24.9942568 1.85472769 3.909680737 0.507089299 0.889566941 260.0579607 1647564.304 0.236708247 0.391286282 5.53E-06 5.257494205 2.054953047 ST(ph)PKEDDSSASTSQSTR ddPTM_HeLa_A485_30min_R1 1 STPKEDDSSASTSQSTR 17 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.156)T(0.843)PKEDDSSASTSQSTR 55.127 0.0090262 0 120260 153600 150640 147100 232900 142250 154070 156810 96846 188960 TRUE FALSE FALSE 147011.4221 171562.1839 206368.0047 155135.7005 209711.6582 149697.99 121151.6859 118352.1016 116282.1039 141855.7496 1.036344474 1.209412973 1.454773637 1.093615881 1.478344437 1.055283205 0.85404847 0.83431304 0.819720767 1 17.1140651 -6.54350803 4.370952638 0.86810937 1.256463296 0.626201462 0.13725908 0.128127257 5.885720847 0.052053042 0.041209478 2.86E-07 6.54350803 0.388353926 ST(ph)PKEDDSSASTSQSTR ddPTM_HeLa_A486_30min_R1 2 STPKEDDSSASTSQSTR 17 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.239)T(0.761)PKEDDSSASTSQSTR;S(0.245)T(0.755)PKEDDSSASTSQSTR ; 91.067 0.0010297 878970000 616350 577010 329070 419550 641870 712730 897440 859870 426120 966500 TRUE FALSE FALSE 573147.0478 531285.6262 456494.7168 976733.6029 561360.6794 624800.6191 672891.0198 664096.3718 463056.4247 724482.1091 0.79111277 0.733331603 0.630097985 1.348181812 0.774844088 0.862410005 0.928789009 0.916649788 0.639155086 1 19.46659054 ST(ph)PPLYR ddPTM_HeLa_A485_30min_R1 1 STPPLYR 7 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 S(0.334)T(0.666)PPLYR 96.19 0.0087465 0 381630 396800 321440 443440 507900 356810 486750 435200 321140 585880 TRUE FALSE FALSE 466522.2769 443202.3083 440354.0322 467664.0044 457331.6927 375492.0199 382751.8861 328466.5176 385589.8523 439830.8983 1.060685547 1.007665241 1.001189398 1.06328138 1.039789825 0.853719057 0.870225097 0.746801825 0.8766775 1 18.74658943 -6.262834209 24.43329436 0.853706075 1.032776127 0.643548678 0.060842397 53.11371037 930387.2459 0.020158392 0.018744736 5.46E-07 6.262834209 0.179070052 ST(ph)PPPNNLVNPVQELETERR ddPTM_HeLa_A485_30min_R1 1 STPPPNNLVNPVQELETERR 20 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.465)T(0.535)PPPNNLVNPVQELETERR 60.735 0.015568 157260000 14366 18088 14437 15664 21480 12828 24557 24380 15453 19785 TRUE FALSE FALSE 17561.66714 20203.23426 19777.84707 16519.68466 19341.37578 13499.65424 19310.19634 18400.76677 18554.27536 14852.96362 1.182367882 1.360215697 1.331575811 1.112214712 1.302189669 0.908886239 1.300090463 1.238861634 1.24919685 1 13.8584632 -5.254598305 24.75068312 1.170181112 1.298269391 0.179278398 0.128156059 848.1677925 3068619.484 0.03414052 0.057465409 5.56E-06 5.254598305 0.128088279 ST(ph)PPPNNLVNPVQELETERR ddPTM_HeLa_A486_30min_R1 1 STPPPNNLVNPVQELETERR 20 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.188)T(0.812)PPPNNLVNPVQELETERR 92.29 0.00045173 182360000 22221 21694 15470 5645.9 24073 17263 18902 17959 15545 22188 TRUE FALSE FALSE 20663.42265 19974.88843 21460.3983 13143.94053 21053.53987 15133.26658 14172.51968 13870.12774 16892.45312 16631.98038 1.242390995 1.200992785 1.29030926 0.790281147 1.265846844 0.909889636 0.852124603 0.833943248 1.015660957 1 14.02167234 -5.296310397 0.793918213 0.918035947 1.289418604 0.413419197 0.141176482 0.844662577 0.957611675 0.066164392 0.216800819 5.05E-06 5.296310397 0.371382657 ST(ph)PQPPSGK ddPTM_HeLa_A485_30min_R1 1 STPQPPSGK 9 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 S(0.096)T(0.903)PQPPSGK 84.658 0.0085172 0 486810 433750 342890 608210 573430 454720 659770 581270 417860 865410 TRUE FALSE FALSE 595099.205 484473.2894 469739.2798 641434.9722 516337.2958 478528.4361 518804.7497 438712.6211 501720.6692 649679.2137 0.915989295 0.745711544 0.723032644 0.987310289 0.794757297 0.7365611 0.798555254 0.675275754 0.772259076 1 19.30936802 -5.987300708 24.99307012 0.775172355 0.835433918 0.023740938 0.106213289 698.9211129 1375515.196 0.032226837 0.036520265 1.03E-06 5.987300708 0.060261563 ST(ph)PQPPSGK ddPTM_HeLa_A486_30min_R1 1 STPQPPSGK 9 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 S(0.184)T(0.816)PQPPSGK 108.43 0.0030652 0 742780 731630 384630 257520 617660 760500 807310 755000 597990 951660 TRUE FALSE FALSE 690714.9577 673652.9742 533569.0367 599519.5743 540187.3233 666677.2422 605312.4991 583102.9815 649824.2547 713358.1417 0.968258323 0.944340486 0.747967964 0.840418773 0.757245613 0.934561762 0.848539413 0.817405658 0.910936901 1 19.44426704 -8.037113801 5.388983402 0.999961451 0.855233255 0.279374298 0.070589702 0.283248823 29.81471379 0.070180217 0.018255565 9.18E-09 8.037113801 -0.144728196 ST(ph)PS(ph)PTPVESSDPK ddPTM_HeLa_A486_30min_R1 1 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 2 0 S(0.408)T(0.592)PS(0.999)PT(0.001)PVESSDPK 127.71 6.41E-05 320180000 293740 314930 253710 144710 349280 311660 368560 351200 273450 427700 TRUE FALSE FALSE 273150.3429 289973.7998 351953.3066 336892.1932 305470.0455 273210.5579 276342.3898 271239.4266 297152.8662 320601.1361 0.851994307 0.904469034 1.097791826 1.050814097 0.952804002 0.852182126 0.86195075 0.846033891 0.926861551 1 18.29042001 -6.080384868 5.644074412 0.886332635 0.982365006 0.184675228 0.076858119 0.343435086 18.40346861 0.027142972 0.027395603 8.31E-07 6.080384868 0.096032371 ST(ph)PYKPIDDR ddPTM_HeLa_A486_30min_R1 1 STPYKPIDDR 10 1 Q8NB90-3;Q8NB90-2;Q8NB90 Q8NB90-3 SPATA5 Spermatogenesis-associated protein 5 1 0 S(0.421)T(0.579)PYKPIDDR 110.38 0.00086597 449680000 689870 673230 338760 333480 637420 770500 931890 863070 488710 885560 TRUE FALSE FALSE 641513.6755 619880.8029 469936.9443 776358.2931 557468.8399 675443.5439 698721.2655 666567.8017 531071.7763 663810.012 0.966411569 0.933822618 0.707938922 1.169548936 0.839801795 1.017525394 1.052592237 1.004154486 0.800035803 1 19.34041086 -5.254883046 24.99935679 0.981877077 0.875834219 0.167082089 0.116328967 1024.575043 3906702.538 0.031003409 0.052125679 5.56E-06 5.254883046 -0.106042858 ST(ph)SFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_HeLa_A486_30min_R1 2 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.116)T(0.441)S(0.441)FRGGMGS(0.002)GGLATGIAGGLAGMGGIQNEKETMQSLNDR;S(0.105)T(0.5)S(0.396)FRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ; 360.1 8.02E-151 2185020000 144493.4 110530 115270 95690.6 296541.1 158825.2 213091.2 305692 105930 201400 TRUE FALSE FALSE 134365.1588 101771.2003 159905.631 222772.5527 259346.1501 139230.9616 159773.5279 236092.6048 115112.0977 150968.1291 0.890023342 0.674123743 1.05920125 1.475626373 1.71788676 0.922254005 1.05832621 1.563857261 0.762492709 1 17.20388449 -4.95715481 5.22470561 1.242561809 0.791110843 0.25610705 0.288758139 0.237213407 15.28544791 0.076923508 0.162661781 1.10E-05 4.95715481 -0.451450966 ST(ph)SHDRVPQSVQIR ddPTM_HeLa_A485_30min_R1 1 STSHDRVPQSVQIR 14 1 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.159)T(0.762)S(0.079)HDRVPQSVQIR 183.74 2.45E-17 693620000 55957 95844 99079 61617 117060 86401 99486 120090 76391 91582 TRUE FALSE FALSE 68404.4416 107052.1221 135732.4451 64982.98069 105405.0954 90924.82276 78230.00337 90637.73921 91721.973 68752.29284 0.994940514 1.557069847 1.97422427 0.94517547 1.533113894 1.322498771 1.13785301 1.318323149 1.334093297 1 16.06912021 -8.645510533 0.280980592 0.914586391 1.453793211 0.126308886 0.282105321 8.766085871 1.365929638 1.420036126 0.443670305 2.26E-09 8.645510533 0.53920682 ST(ph)SHDRVPQSVQIR ddPTM_HeLa_A486_30min_R1 1 STSHDRVPQSVQIR 14 1 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.013)T(0.56)S(0.427)HDRVPQSVQIR 131.45 2.13E-05 629500000 106670 112550 106230 14480 132590 101850 109860 124630 100360 97442 TRUE FALSE FALSE 99192.98384 103631.1281 147365.1009 33710.17178 115959.3258 89284.78253 82371.86602 96254.46965 109059.2856 73041.88896 1.358028732 1.418790362 2.017542304 0.461518346 1.587572932 1.222377786 1.127734608 1.317798198 1.49310604 1 16.15643646 -5.222383609 24.99915381 1.203574362 1.580187151 0.251242809 0.333047926 844.699485 540681.4287 0.087273324 0.151158381 5.99E-06 5.222383609 0.376612788 ST(ph)SLNERPK ddPTM_HeLa_A486_30min_R1 2 STSLNERPK 9 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 S(0.007)T(0.621)S(0.372)LNERPK;S(0.112)T(0.513)S(0.376)LNERPK ; 85.845 0.0050686 2115590000 677780 648720 350395 270814 591610 674650 828220 817600 561740 872050 TRUE FALSE FALSE 630271.1221 597313.0646 486077.3279 630468.6782 517404.7573 591418.5423 620990.596 631450.3281 610432.0755 653683.0039 0.964184656 0.913765634 0.743597929 0.964486876 0.791522426 0.904748232 0.949987367 0.965988597 0.933835012 1 19.31823166 -6.68156799 3.617087846 0.960647881 0.873236168 0.274013742 0.066531721 0.320574645 8.241913809 0.027038987 0.019857058 2.08E-07 6.68156799 -0.087411713 ST(ph)SYGYSR ddPTM_HeLa_A486_30min_R1 1 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 S(0.011)T(0.546)S(0.443)YGYSR 148.69 0.0012866 1777000000 2044100 2051500 1647300 607070 2216400 1898400 1915700 1992300 1633100 2108100 TRUE FALSE FALSE 1900819.146 1888931.669 2285178.676 1413289.64 1938398.445 1664194.71 1436371.598 1538696.782 1774658.423 1580218.039 1.202884095 1.195361414 1.446116055 0.894363692 1.22666518 1.053142458 0.908970511 0.973724349 1.123046554 1 20.5916922 -5.266958937 24.99999409 1.029260033 1.272844611 0.521271252 0.112188763 371.6962808 1683542.314 0.031694293 0.048524412 5.41E-06 5.266958937 0.243584578 ST(ph)TPPPAEPVSLPQEPPKPR ddPTM_HeLa_A485_30min_R1 2 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.002)T(0.499)T(0.499)PPPAEPVSLPQEPPKPR;S(0.12)T(0.44)T(0.44)PPPAEPVSLPQEPPKPR ; 240.2 4.35E-46 57755000000 6805100 6680600 5097840 8635700 8652600 7678600 10389100 10331100 6258300 11246400 TRUE FALSE FALSE 8318871.018 7461838.057 6983743.155 9107446.424 7791116.763 8080639.623 8169383.914 7797381.526 7514283.405 8442879.455 0.985312068 0.88380251 0.827175514 1.078713308 0.922803269 0.957095226 0.967606367 0.923545287 0.890014295 1 23.00930369 -5.219541959 24.99981919 0.957932851 0.897267335 0.188602052 0.060272243 890.1842383 531163.9193 0.016258705 0.02816054 6.03E-06 5.219541959 -0.060665516 ST(ph)TPPPAEPVSLPQEPPKPR ddPTM_HeLa_A486_30min_R1 1 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.017)T(0.491)T(0.491)PPPAEPVSLPQEPPKPR 176.65 3.60E-14 40263000000 2630200 2584900 1593400 1095900 2548900 2835400 3487000 3280500 2032000 3366400 TRUE FALSE FALSE 2445836.562 2380063.11 2210407.153 2551310.584 2229193.194 2485597.176 2614515.718 2533601.763 2208135.396 2523431.528 0.969250219 0.943185136 0.875952895 1.011048073 0.883397536 0.985006785 1.036095368 1.004030319 0.87505263 1 21.26695551 ST(ph)TPT(ph)SSPFR ddPTM_HeLa_A486_30min_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 2 0 S(0.299)T(0.4)T(0.3)PT(0.859)S(0.128)S(0.013)PFR 72.2 0.018263 648510000 829160 990470 680030 273220 1010800 800780 773100 748480 647620 706980 TRUE FALSE FALSE 771040.1658 911981.55 943355.8278 636069.9678 884016.0387 701987.9053 579662.203 578067.4432 703756.223 529947.6063 1.454936595 1.720890026 1.780092629 1.200250667 1.668119694 1.32463643 1.093810399 1.090801121 1.327973208 1 19.01549021 -6.498593665 3.57481938 1.138075031 1.564447245 0.595306198 0.169629743 0.173121815 4.678594199 0.066314053 0.054113303 3.17E-07 6.498593665 0.426372214 ST(ph)TPTSSPFR ddPTM_HeLa_A485_30min_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.223)T(0.323)T(0.323)PT(0.036)S(0.083)S(0.012)PFR 84.06 0.024514 1558400000 625700 831010 711580 580610 922880 698040 847260 897150 631430 766700 TRUE FALSE FALSE 764884.8064 928189.3907 974823.0533 612327.2541 830994.8268 734588.295 666235.9795 677122.5558 758152.2092 575575.8001 1.328903693 1.612627547 1.693648436 1.063851632 1.443762623 1.276266818 1.157512146 1.176426382 1.317206542 1 19.13464641 -5.849201955 0.25597182 1.011666389 1.696613127 0.408439625 0.164223838 4.188025015 0.48142715 0.284849561 0.914816928 1.42E-06 5.849201955 0.684946738 ST(ph)TPTSSPFR ddPTM_HeLa_A486_30min_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.016)T(0.492)T(0.492)PTSSPFR 141.29 3.63E-05 954780000 1295700 1251600 918860 374950 1292000 977570 1097600 1118200 1004300 1041800 TRUE FALSE FALSE 1204878.121 1152418.658 1274667.2 872902.5489 1129945.313 856967.3526 822968.8708 863610.2701 1091353.533 780926.499 1.542882874 1.475706945 1.6322499 1.117778114 1.446929146 1.097372613 1.053836529 1.10587907 1.397511205 1 19.57482724 -5.482035699 1.106294577 1.14474712 1.56066013 0.536509985 0.151040809 0.416636096 1.030461237 0.058377152 0.122008233 3.30E-06 5.482035699 0.41591301 ST(ph)TTPPRCS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 STTTPPRCSPAR 12 1 A0A0A0MS59;Q6ZRS2-2;Q6ZRS2;A0A0C4DFX4;Q6ZRS2-3 A0A0A0MS59 SRCAP Helicase SRCAP 2 0 S(0.417)T(0.569)T(0.014)TPPRCS(1)PAR 119.87 0.00057656 0 205390 240480 204530 80573 265930 201440 216800 226480 187710 218970 TRUE FALSE FALSE 190993.2216 221423.489 283729.4935 187578.0159 232574.5797 176588.3809 162554.3469 174915.448 203980.8539 164138.4867 1.163610226 1.349004084 1.728598205 1.142803371 1.416941172 1.075849939 0.990348761 1.065657735 1.242736289 1 17.32455403 -6.267880085 23.65923488 1.073736505 1.367959829 0.432737266 0.163185165 243.9834634 896242.8875 0.05734672 0.051849681 5.40E-07 6.267880085 0.294223325 ST(ph)VLGLPQHVQK ddPTM_HeLa_A485_30min_R1 1 STVLGLPQHVQK 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.141)T(0.859)VLGLPQHVQK 183 8.82E-13 153510000 213620 137870 118280 191300 219660 169770 278670 244150 132480 255300 TRUE FALSE FALSE 261139.032 153992.6972 162036.694 201750.2346 197789.8791 178658.8947 219129.878 184271.8297 159067.5208 191658.4084 1.362523221 0.803474778 0.845445266 1.052655275 1.03199166 0.932173528 1.143335582 0.961459668 0.82995326 1 17.54817777 -4.246729038 24.60207975 0.961516504 1.362523573 0.587451717 0.102191888 1631.921613 2729226.881 0.026612476 0.569927535 5.67E-05 4.246729038 0.401007069 ST(ph)VLGLPQHVQK ddPTM_HeLa_A486_30min_R1 1 STVLGLPQHVQK 12 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.15)T(0.85)VLGLPQHVQK 141 1.70E-06 137090000 251200 303110 179940 135590 248850 327510 441530 406950 247020 337380 TRUE FALSE FALSE 233592.1772 279090.4597 249617.587 315660.3723 217636.9126 287105.1461 331054.524 314296.3687 268431.8925 252897.852 0.923662164 1.10356991 0.987029289 1.248173402 0.860572404 1.135261307 1.309044428 1.242779906 1.061424169 1 17.94819526 -6.509026146 24.90153187 1.180487945 1.035181386 0.18088296 0.127453986 923.8338484 1660695.912 0.044364522 0.037523067 3.10E-07 6.509026146 -0.145306558 STAALSGEAASCS(ph)PIIMPYK ddPTM_HeLa_A485_30min_R1 2 STAALSGEAASCSPIIMPYK 20 0 Q14244-5;Q14244-6;Q14244;Q14244-7;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 STAALSGEAAS(0.08)CS(0.92)PIIMPYK;STAALSGEAASCS(1)PIIMPYK ; 255.19 1.46E-58 317650000 189879 161074 159035 250163 302097 178277 242666 252887 198345 337071 TRUE FALSE FALSE 232116.9285 179910.2031 217868.6645 263828.7712 272019.162 187611.3081 190818.4267 190866.0667 238151.0222 253045.403 0.917293599 0.710979931 0.860986455 1.042614361 1.074981638 0.741413619 0.754087703 0.75427597 0.941139492 1 17.94903674 -8.884208253 15.1564508 1.000013475 0.862725235 0.097301868 0.121593136 0 0 0.128110468 0.031071352 1.31E-09 8.884208253 -0.137288241 STAALSGEAASCS(ph)PIIMPYK ddPTM_HeLa_A486_30min_R1 1 STAALSGEAASCSPIIMPYK 20 0 Q14244-5;Q14244-6;Q14244;Q14244-7;Q14244-3;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 STAALSGEAAS(0.003)CS(0.997)PIIMPYK 229.96 7.20E-36 169890000 169740 174700 119320 56164 193530 169110 202930 183560 129380 188520 TRUE FALSE FALSE 157842.1025 160856.1358 165523.8995 130752.6304 169255.6628 148246.9276 152154.7676 141767.3951 140594.7626 141313.3649 1.116965141 1.138293861 1.171325158 0.925267263 1.197732875 1.049065158 1.076718877 1.003212931 0.994914831 1 17.10853839 -6.763069251 0.493274207 0.983000254 1.128493035 0.291692961 0.070319143 1.268990388 0.671321523 0.06825226 0.062334949 1.73E-07 6.763069251 0.14549278 STAGDTHLGGEDFDNR ddPTM_HeLa_A485_30min_R1 6 STAGDTHLGGEDFDNR 16 0 P11142;E9PKE3;P11142-2;E9PN89;P54652 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;;;;; ;;;;; 186.77 2.70E-17 5285330000 2430602 3420418 3360344 2243334 4164500 3248622 3837790 4398470 3000273 3413715 FALSE FALSE TRUE 2971281.029 3820406.131 4603475.081 2365881.656 3749867.758 3418714.825 3017814.815 3319738.336 3602400.271 2562738.675 1.159416314 1.490751347 1.796310769 0.923184903 1.46322674 1.334008363 1.177574149 1.295386989 1.405683812 1 21.28925494 -13.29410677 0.171033294 6.92E-09 1.425069539 0.171388956 0.220775343 180.5168218 2.124226224 62.76324874 0.806854151 5.08E-14 13.29410677 1.425069532 STAGDTHLGGEDFDNR ddPTM_HeLa_A486_30min_R1 7 STAGDTHLGGEDFDNR 16 0 P11142;E9PKE3;P11142-2;E9PN89;P54652 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;;;;;; ;;;;;; 199.37 1.45E-24 4291741000 3766292.4 4444469 3895357.2 677609.8 5662721 3878401.8 4520172 4601945 3741587.6 3803929.9 FALSE FALSE TRUE 3502294.752 4092273.09 5403743.829 1577509.859 4952449.729 3399924.019 3389177.156 3554182.583 4065911.426 2851401.094 1.228271519 1.435179743 1.895118804 0.553240252 1.736847805 1.192369613 1.188600637 1.246468829 1.425934582 1 21.44323956 -13.9616907 0.128196329 2.26E-09 1.453859637 0.072650374 0.341533109 411.8213287 3.374051828 107.5045537 2.632669819 1.09E-14 13.9616907 1.453859635 STANKYQVFFFGTHETAFLGPK ddPTM_HeLa_A485_30min_R1 2 STANKYQVFFFGTHETAFLGPK 22 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 ; ; 132.45 2.59E-09 54591000 60013 119653 67219 41923 112171 119717 159188 249912 67604 75753 FALSE FALSE TRUE 73362.68481 133645.3775 92086.10532 44213.14734 101002.8614 125985.197 125176.1834 188620.6902 81171.5027 56869.17123 1.290025566 2.350049677 1.619262305 0.777453696 1.776056503 2.215351381 2.201125507 3.316747652 1.427337535 1 15.79535916 -6.130964979 4.511045762 2.184649123 1.547093945 0.093736035 0.676790596 0.436910592 14.07989303 0.225194776 0.226379699 7.40E-07 6.130964979 -0.637555179 STANQS(ph)FRK ddPTM_HeLa_A486_30min_R1 1 STANQSFRK 9 1 Q13464;J3KRH6 Q13464 ROCK1 Rho-associated protein kinase 1 1 0 S(0.001)T(0.003)ANQS(0.996)FRK 54.023 0.025774 345160000 442130 504590 421490 215530 476940 487710 622750 743500 398690 458890 TRUE FALSE FALSE 411138.9702 464604.4507 584702.2159 501764.7323 417117.7379 427541.2989 466931.3632 574221.2805 433248.7702 343980.9571 1.19523759 1.350669103 1.699809841 1.458699157 1.212618691 1.242921418 1.357433758 1.669340318 1.259513823 1 18.39196917 -5.722124147 24.97824965 1.324758796 1.440266257 0.086324722 0.196104923 482.0337974 306249.5667 0.060012442 0.077474532 1.90E-06 5.722124147 0.115507461 STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_HeLa_A485_30min_R1 3 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 S(0.001)T(0.001)APS(0.005)AAAS(0.005)AS(0.005)AS(0.02)AAAS(0.482)S(0.482)PAGGGAEALELLEHCGVCR;S(0.005)T(0.005)APS(0.005)AAAS(0.01)AS(0.031)AS(0.116)AAAS(0.413)S(0.413)PAGGGAEALELLEHCGVCR;STAPSAAAS(0.001)AS(0.001)AS(0.003)AAAS(0.497)S(0.497)PAGGGAEALELLEHCGVCR ;; 57.025 0.0099894 92443000 14945.3 22258.8 18830.7 23043.7 25051.9 15404.8 24147.4 22417.3 18777.2 31109.1 TRUE FALSE FALSE 18269.83042 24861.77303 25796.95954 24302.51898 22557.64487 16211.37151 18988.11072 16919.42203 22545.61181 23354.17389 0.782294013 1.064553735 1.104597391 1.040607092 0.965893505 0.69415307 0.813049985 0.724471013 0.965378262 1 14.51139279 -6.069693297 7.484045557 0.82083606 1.009608322 0.282868082 0.119617134 0.314462847 30.03398329 0.038806192 0.038973957 8.52E-07 6.069693297 0.188772262 STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_HeLa_A486_30min_R1 2 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 STAPS(0.001)AAAS(0.001)AS(0.002)AS(0.006)AAAS(0.495)S(0.495)PAGGGAEALELLEHCGVCR;STAPSAAASAS(0.001)ASAAAS(0.525)S(0.474)PAGGGAEALELLEHCGVCR ; 84.529 0.00011728 126658000 19422.9 17035.5 19600.1 6720.5 19007.3 18730.4 15453 17411.7 14930.3 16074.9 TRUE FALSE FALSE 18061.45501 15685.54494 27189.78363 15645.66364 16623.2272 16419.63368 11586.49595 13447.436 16224.47043 12049.64041 1.498920664 1.30174382 2.256480916 1.29843407 1.379562097 1.362665866 0.961563629 1.116003096 1.346469262 1 13.55670247 -5.999014492 1.421569432 1.133991557 1.632012944 0.3879693 0.268510295 0.44275225 1.839824388 0.112596363 0.126409453 1.00E-06 5.999014492 0.498021387 STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_HeLa_A485_30min_R1 8 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 STAPSAAASASASAAAS(0.138)S(0.862)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.001)S(0.999)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.054)S(0.946)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.137)S(0.863)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAASS(1)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAASS(1)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.037)S(0.963)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.047)S(0.953)PAGGGAEALELLEHCGVCR ;;;;;;; 326.27 7.21E-113 38733049000 1195295 1546523.2 1683668.6 1403004.6 2342406.6 1421951.7 1894410.6 1860506.1 1611865.4 2122550.6 TRUE FALSE FALSE 1461184.249 1727375.635 2306527.678 1479647.189 2109188.374 1496402.892 1489654.299 1404214.062 1935352.001 1593437.798 0.917001122 1.084055893 1.447516609 0.928587982 1.323671609 0.939103424 0.934868183 0.881248119 1.214576435 1 20.60371127 -6.3066829 24.99873595 0.982844015 1.14237026 0.152067947 0.171583826 802.1611088 443221.6994 0.059250403 0.052254138 4.94E-07 6.3066829 0.159526245 STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_HeLa_A486_30min_R1 8 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 STAPSAAASASASAAAS(0.166)S(0.834)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.005)S(0.995)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.001)S(0.999)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.006)S(0.994)PAGGGAEALELLEHCGVCR;STAPSAAASAS(0.001)AS(0.002)AAAS(0.189)S(0.808)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.164)S(0.836)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.028)S(0.972)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.003)S(0.997)PAGGGAEALELLEHCGVCR ;;;;;;; 346.4 1.40E-149 34565999000 1040805 1488340.9 1259020.4 462217.3 1563873.5 1342597.5 1445069.5 1661736.9 1228898.8 1430143.1 TRUE FALSE FALSE 967849.9442 1370399.347 1746546.817 1076065.234 1367717.903 1176961.471 1083497.827 1283395.683 1335420.737 1072025.959 0.902823235 1.278326644 1.629201981 1.003767889 1.275825358 1.097885234 1.01070111 1.197168476 1.245698135 1 20.03190841 STAQQELDGKPAS(ph)PTPVIVASHTANK ddPTM_HeLa_A485_30min_R1 3 STAQQELDGKPASPTPVIVASHTANK 26 1 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.997)PT(0.003)PVIVASHTANK;STAQQELDGKPAS(0.972)PT(0.028)PVIVASHTANK;STAQQELDGKPAS(0.997)PT(0.003)PVIVASHTANK ;; 232.53 2.58E-39 4523020000 2886580 1965800 1156596 3935640 1867180 2189140 3337620 2795060 1679950 5068590 TRUE FALSE FALSE 3528689.762 2195683.21 1584468.99 4150634.048 1681277.003 2303759.985 2624510.221 2109567.153 2017100.556 3805083.793 0.927361907 0.577039384 0.416408436 1.090812784 0.441850192 0.605442642 0.689737825 0.554407542 0.530106737 1 21.85949679 -10.18636555 5.033349821 1.000028634 0.643388269 0.216847536 0.200426487 6.19E-05 1.00E-05 0.186593163 0.045251861 6.51E-11 10.18636555 -0.356640365 STAQQELDGKPAS(ph)PTPVIVASHTANK ddPTM_HeLa_A486_30min_R1 4 STAQQELDGKPASPTPVIVASHTANK 26 1 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.975)PT(0.025)PVIVASHTANK;STAQQELDGKPAS(0.997)PT(0.003)PVIVASHTANK;STAQQELDGKPAS(0.953)PT(0.047)PVIVASHTANK;STAQQELDGKPAS(0.992)PT(0.008)PVIVASHTANK ;;; 304.7 7.17E-91 5378580000 3118900 2723160 886124 1131083 1542026 3112900 3474590 3046720 2187092 5218630 TRUE FALSE FALSE 2900281.216 2507366.884 1229254.944 2633218.386 1348610.72 2728862.048 2605210.832 2353048.365 2376670.896 3911851.08 0.741408902 0.640966855 0.314238686 0.673138709 0.344750015 0.697588428 0.665979041 0.601517879 0.607556588 1 21.89942002 -9.848474353 0.432507808 1.138946726 0.559964613 0.457238231 0.135750613 12.17419386 1.695980922 2.345716305 0.080070481 1.42E-10 9.848474353 -0.578982113 STAQQELDGKPAS(ph)PTPVIVASHTANKEEK ddPTM_HeLa_A485_30min_R1 7 STAQQELDGKPASPTPVIVASHTANKEEK 29 2 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.994)PT(0.006)PVIVASHTANKEEK;STAQQELDGKPAS(0.998)PT(0.002)PVIVASHTANKEEK;STAQQELDGKPAS(0.494)PT(0.494)PVIVAS(0.011)HTANKEEK;STAQQELDGKPAS(0.991)PT(0.009)PVIVASHTANKEEK;STAQQELDGKPAS(0.802)PT(0.198)PVIVASHTANKEEK;STAQQELDGKPAS(0.994)PT(0.006)PVIVASHTANKEEK;STAQQELDGKPAS(0.846)PT(0.154)PVIVASHTANKEEK ;;;;;; 273.01 2.02E-77 60200951000 5883570 3248640 1814988 11416400 6005880 5559040 12369660 11377740 3891360 15408630 TRUE FALSE FALSE 7192349.848 3628540.189 2486427.589 12040049.02 5407913.499 5850102.738 9726781.09 8587331.425 4672320.258 11567542.12 0.62176993 0.313682903 0.214948652 1.04084765 0.467507569 0.505734293 0.84086844 0.742364397 0.403916425 1 23.46357902 -14 0.063381569 2.421082188 3.04E-10 0.234592439 0.235719741 543.7443782 2.500498273 119.079967 17.94720198 1.00E-14 14 -2.421082187 STAQQELDGKPAS(ph)PTPVIVASHTANKEEK ddPTM_HeLa_A486_30min_R1 4 STAQQELDGKPASPTPVIVASHTANKEEK 29 2 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.83)PT(0.17)PVIVASHTANKEEK;STAQQELDGKPAS(0.966)PT(0.034)PVIVASHTANKEEK;STAQQELDGKPAS(0.992)PT(0.008)PVIVASHTANKEEK;STAQQELDGKPAS(0.885)PT(0.115)PVIVASHTANKEEK ;;; 179.2 1.08E-20 17643730000 3378170 2560060 801483 2495910 2289430 4312780 6314540 5589320 2018350 7361200 TRUE FALSE FALSE 3141377.728 2357191.522 1111838.682 5810604.616 2002268.341 3780713.053 4734575.304 4316753.85 2193302.203 5517907.607 0.569305967 0.427189379 0.20149643 1.053044928 0.362867319 0.685171504 0.858038162 0.782317168 0.397488026 1 22.39568987 -8.811488674 0.078712786 1.596758012 1.88E-15 0.223355458 0.240997438 69.91718734 1.948267924 24.01665666 14.74627075 1.54E-09 8.811488674 -1.596758012 STDEYS(ph)EADEEEEEEEGKPSR ddPTM_HeLa_A485_30min_R1 1 STDEYSEADEEEEEEEGKPSR 21 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 S(0.001)T(0.001)DEYS(0.998)EADEEEEEEEGKPSR 164.31 7.85E-14 382180000 115510 107220 85736 150520 127360 124810 151960 181160 104850 191290 TRUE FALSE FALSE 141204.801 119758.4463 117453.3142 158742.5265 114679.5912 131344.8586 119492.5046 136730.226 125892.4333 143604.9234 0.983286628 0.833943875 0.817891973 1.105411449 0.798577016 0.914626431 0.832091977 0.952127703 0.876658197 1 17.13174569 -10.2802887 3.260832017 1.000448018 0.899956358 0.099489352 0.088662929 43965009.59 65092560.63 197050.2047 0.020795077 5.24E-11 10.2802887 -0.10049166 STDEYS(ph)EADEEEEEEEGKPSR ddPTM_HeLa_A486_30min_R1 1 STDEYSEADEEEEEEEGKPSR 21 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 STDEYS(1)EADEEEEEEEGKPSR 184.3 1.67E-19 727360000 192510 206800 103360 89123 171700 219020 252530 250550 141270 258690 TRUE FALSE FALSE 179016.0431 190412.4148 143383.7601 207482.848 150163.785 191999.5392 189344.323 193505.2345 153515.3973 193912.3402 0.923180252 0.981950992 0.73942566 1.069982693 0.77439004 0.990135744 0.976442875 0.997900568 0.791674203 1 17.56504509 STDS(ph)PVPGSEDDLVAGATLHSPEWSEER ddPTM_HeLa_A485_30min_R1 1 STDSPVPGSEDDLVAGATLHSPEWSEER 28 0 Q9H694;Q9H694-2 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 STDS(1)PVPGSEDDLVAGATLHSPEWSEER 152.19 1.76E-09 237500000 20712 19971 22730 26338 31461 23797 26312 27865 22988 29852 TRUE FALSE FALSE 25319.31294 22306.43473 31138.77287 27776.77825 28328.63237 25042.97412 20690.22625 21031.06506 27601.48074 22410.44579 1.129799612 0.995358813 1.389475835 1.239456748 1.264081609 1.117468807 0.92324028 0.938449206 1.231634614 1 14.45188373 -6.530816209 7.273439174 1.017994861 1.203262561 0.325356902 0.122308625 0.168315775 53.52324648 0.047795803 0.038167069 2.95E-07 6.530816209 0.1852677 STDSEVSQS(ph)PAK ddPTM_HeLa_A485_30min_R1 7 STDSEVSQSPAK 12 0 A0A0G2JNJ7;H7C148;H7C3F5;A0A2H2FJL5;B7Z6J7;O75175 A0A0G2JNJ7 CNOT3 CCR4-NOT transcription complex subunit 3 1 0 STDSEVS(0.001)QS(0.999)PAK;STDSEVS(0.001)QS(0.999)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK ;;;;;; 334.26 3.02E-73 7320414000 8175812 7458716 5888435 10535875 9926857 7996393 11365230 10403620 5763817 13243230 TRUE FALSE FALSE 9994493.173 8330947.954 8066812.145 11111423.17 8938504.262 8415071.773 8936955.765 7852115.883 6920562.203 9941936.485 1.005286363 0.837960287 0.811392444 1.11763168 0.899070747 0.8464218 0.898914993 0.78979743 0.69609801 1 23.24509546 -6.609720529 1.638068777 0.819634121 0.929944011 0.128500897 0.108785827 0.735647499 4.022190885 0.056063094 0.038867277 2.46E-07 6.609720529 0.11030989 STDSEVSQS(ph)PAK ddPTM_HeLa_A486_30min_R1 6 STDSEVSQSPAK 12 0 A0A0G2JNJ7;H7C148;H7C3F5;A0A2H2FJL5;B7Z6J7;O75175 A0A0G2JNJ7 CNOT3 CCR4-NOT transcription complex subunit 3 1 0 STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVSQS(1)PAK ;;;;; 320.06 7.18E-61 7299210000 11606340 10137550 5733950 5488480 10170900 10376610 13194680 11246120 6656320 13459000 TRUE FALSE FALSE 10792795.5 9334213.618 7954289.001 12777458.81 8895170.882 9096449.36 9893231.505 8685623.977 7233295.177 10088778.8 1.069782153 0.925207481 0.788429319 1.266502029 0.881689554 0.901640282 0.980617348 0.86091926 0.716964394 1 23.26624822 -7.317201127 5.065849246 0.838370449 0.969521551 0.123199567 0.136580241 0.421399807 23.45441845 0.075687012 0.035635884 4.82E-08 7.317201127 0.131151102 STEDLS(ph)PQK ddPTM_HeLa_A485_30min_R1 1 STEDLSPQK 9 0 Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8;Q96RT1-7 Q96RT1-6 ERBB2IP Protein LAP2 1 0 STEDLS(1)PQK 64.86 0.013919 0 201900 152210 91823 274380 169730 150030 267250 241460 142410 483100 TRUE FALSE FALSE 246811.9585 170009.6354 125792.1488 289368.6846 152831.0852 157885.3388 210149.8543 182241.5564 170990.3807 362672.0608 0.680537558 0.468769596 0.346848193 0.797879726 0.421402975 0.435339128 0.5794487 0.502496818 0.471473817 1 18.46830608 -10.37282581 2.887194166 1.007417446 0.519552192 0.563592577 0.125977447 11358893.29 13557755.52 706305.1063 0.030980007 4.24E-11 10.37282581 -0.487865255 STELKTEIKEEEDQPSTSATQSS(ph)PAPGQSK ddPTM_HeLa_A486_30min_R1 1 STELKTEIKEEEDQPSTSATQSSPAPGQSK 30 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 STELKTEIKEEEDQPSTSATQS(0.015)S(0.985)PAPGQSK 292.91 1.35E-92 424990000 331030 232660 80781 299720 291360 359760 637470 617540 181960 673600 TRUE FALSE FALSE 307826.5064 214223.1743 112061.5666 697763.307 254814.912 315376.469 477968.2635 476939.6228 197732.4393 504926.1756 0.609646561 0.424266328 0.221936536 1.381911536 0.504657758 0.624599168 0.946610191 0.944572981 0.391606633 1 18.94571294 -5.191211191 24.99999922 0.808445302 0.41918149 0.309515117 0.278967502 206.4532804 73492.78791 0.073746626 0.127732895 6.44E-06 5.191211191 -0.389263812 STELLIR ddPTM_HeLa_A485_30min_R1 2 STELLIR 7 0 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 ; ; 132.53 0.0059317 117730000 120094 174268 183310 153817 229470 131888 205090 281510 195165 380660 FALSE FALSE TRUE 146808.496 194647.1267 251123.9972 162219.6332 206623.1611 138793.4517 161270.8461 212469.2311 234332.8253 285768.4675 0.513732314 0.681135775 0.878767344 0.567661067 0.723043948 0.485684978 0.564340942 0.743501314 0.820009385 1 18.12448721 -7.911888265 1.805751318 0.993522092 0.639384713 0.527797639 0.109868521 0.274813708 1.972028742 0.10822711 0.031142396 1.22E-08 7.911888265 -0.354137379 STETSDFENIES(ph)PLNER ddPTM_HeLa_A485_30min_R1 3 STETSDFENIESPLNER 17 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER ;; 427.08 1.23E-172 697920000 293848 388169 318492 408540 467599 373939 444937 458021 308970 549850 TRUE FALSE FALSE 359213.4738 433561.9879 436315.4444 430857.5057 421043.2017 393517.8678 349872.5751 345690.6316 370977.445 412782.5142 0.870224541 1.050340005 1.057010482 1.043788171 1.020012203 0.95332979 0.847595436 0.83746433 0.89872374 1 18.65502233 -6.517546707 3.710698526 0.882879252 1.014338284 0.389574241 0.065020044 0.205153594 6.191693966 0.025145961 0.020262706 3.04E-07 6.517546707 0.131459032 STETSDFENIES(ph)PLNER ddPTM_HeLa_A486_30min_R1 3 STETSDFENIESPLNER 17 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER ;; 391.74 1.27E-135 1016474000 861060 989120 749820 360802 1055990 894040 1030920 1039710 847010 1012900 TRUE FALSE FALSE 800704.1405 910738.5289 1040170.385 839965.2899 923537.8875 783742.4347 772972.912 802990.7297 920429.5088 759263.2471 1.054580402 1.199502982 1.369973311 1.106289937 1.216360585 1.032240712 1.018056537 1.057591992 1.212266644 1 19.53424065 -6.258360437 24.86991903 1.06475726 1.195327108 0.307638835 0.09377662 323.3338154 2611711.609 0.032173149 0.030882271 5.52E-07 6.258360437 0.130569848 STFAGS(ph)PER ddPTM_HeLa_A485_30min_R1 3 STFAGSPER 9 0 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 0 STFAGS(1)PER;STFAGS(1)PER;STFAGS(1)PER ;; 115.41 0.00068234 1143740000 969590 1245880 1067680 1017210 1308800 1071200 1376160 1311540 1063790 1258390 TRUE FALSE FALSE 1185271.95 1391574.828 1462659.262 1072777.607 1178491.277 1127286.376 1082132.174 989882.7586 1277282.895 944696.532 1.254658941 1.473038993 1.54828478 1.135579067 1.24748132 1.193278833 1.14548126 1.047831473 1.352056298 1 19.84949144 -5.273403342 24.94754799 1.166633225 1.430098714 0.52816438 0.114678385 537.0846782 1119941.331 0.031338072 0.046894192 5.33E-06 5.273403342 0.263465489 STFAGS(ph)PER ddPTM_HeLa_A486_30min_R1 2 STFAGSPER 9 0 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 0 STFAGS(1)PER;STFAGS(1)PER ; 117.99 0.00055903 697680000 885680 930730 715010 245650 963040 857200 892480 938680 849090 925930 TRUE FALSE FALSE 823598.4057 856975.5651 991881.0206 571885.6145 842246.5432 751447.3794 669172.0643 724963.0552 922689.8049 694071.1012 1.186619648 1.234708611 1.429076962 0.823958257 1.21348741 1.082666283 0.964126101 1.044508342 1.329388017 1 19.40472394 -5.244235862 24.97219991 1.069966289 1.278592405 0.334289629 0.140838617 983.7077972 1427923.869 0.037414007 0.064596786 5.70E-06 5.244235862 0.208626117 STFAGS(ph)PERESIHILSVDEK ddPTM_HeLa_A486_30min_R1 1 STFAGSPERESIHILSVDEK 20 1 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 0 ST(0.002)FAGS(0.854)PERES(0.144)IHILSVDEK 136.71 9.64E-08 172900000 373300 311670 298970 92693 473490 256820 406310 325990 223880 172800 TRUE FALSE FALSE 347133.5977 286972.1341 414739.1907 215793.9884 414100.4691 225136.1596 304646.9405 251769.1933 243286.0987 129529.7553 2.679952549 2.215491981 3.201883535 1.665980052 3.196952455 1.738103798 2.35194562 1.943717046 1.878225572 1 16.98292402 -8.297029178 0.329690004 0.789440961 2.670489394 0.491840344 0.470563014 1.932725744 0.500681348 1.187533137 0.503589576 5.05E-09 8.297029178 1.881048432 STFAGSPERES(ph)IHILSVDEK ddPTM_HeLa_A485_30min_R1 1 STFAGSPERESIHILSVDEK 20 1 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 0 S(0.24)T(0.24)FAGS(0.24)PERES(0.281)IHILSVDEK 127.83 3.38E-07 346630000 343090 474280 434710 311290 978410 535530 845390 993440 497840 612070 TRUE FALSE FALSE 419409.1869 529742.9203 595527.3188 328294.9845 880996.065 563569.5227 664765.5203 749797.2823 597751.9215 459492.2133 0.91276669 1.152887699 1.296055301 0.714473445 1.917325342 1.226505056 1.446739468 1.631795405 1.300896738 1 18.80968089 -5.74861338 24.99999752 1.443741377 1.048392439 0.343606632 0.269501555 261.0109861 508751.2615 0.075665946 0.097042861 1.78E-06 5.74861338 -0.395348938 STFREES(ph)PLR ddPTM_HeLa_A485_30min_R1 8 STFREESPLR 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR ;;;;;;; 168.31 1.66E-07 19101960000 2784950 3082150 6393000 5714410 17112800 5575670 10266930 13050420 7208520 9654860 TRUE FALSE FALSE 3404452.52 3442580.631 8758036.735 6026573.749 15408989.55 5867603.46 8073316.532 9849784.033 8655203.844 7248081.087 0.469703978 0.47496442 1.208324884 0.831471624 2.125940557 0.809538882 1.113855714 1.358950585 1.194137281 1 22.78916766 -4.762562318 7.436718755 1.22116156 0.468316662 0.412782155 0.349298057 0.106398283 37.88741816 0.088483856 0.207905156 1.73E-05 4.762562318 -0.752844899 STFREES(ph)PLR ddPTM_HeLa_A486_30min_R1 6 STFREESPLR 10 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 STFREES(0.999)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR;STFREES(1)PLR ;;;;; 183.89 6.12E-10 26662000000 4357850 6578910 11161400 5314850 22606100 9814380 14679600 18228700 6878940 5807330 TRUE FALSE FALSE 4052387.219 6057573.212 15483392.99 12373239.4 19770632.14 8603581.581 11006608.82 14078422.94 7475212.058 4353136.769 0.930911992 1.39154213 3.556835867 2.842373225 4.541697906 1.976409665 2.528431657 3.234086979 1.717201286 1 22.05362392 -4.63072254 6.007217504 2.793233864 1.047234314 0.287789333 0.947530205 0.214259694 10.29273986 0.233885275 0.638011721 2.34E-05 4.63072254 -1.74599955 STFS(ph)PAPRPEMPGTVEVESTFLAR ddPTM_HeLa_A485_30min_R1 4 STFSPAPRPEMPGTVEVESTFLAR 24 1 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 ST(0.001)FS(0.998)PAPRPEMPGTVEVESTFLAR;S(0.001)T(0.005)FS(0.994)PAPRPEMPGTVEVESTFLAR;S(0.028)T(0.028)FS(0.945)PAPRPEMPGTVEVESTFLAR;ST(0.001)FS(0.999)PAPRPEMPGTVEVESTFLAR ;;; 138.88 4.37E-07 542100000 195945 221422 210946 174672 255953 198069 228722 232507 184623 275531 TRUE FALSE FALSE 239532.2892 247315.3768 288983.7036 184213.8891 230469.4206 208439.5866 179853.6762 175484.2937 221675.1426 206846.1925 1.158021264 1.195648679 1.397094624 0.890583901 1.114206734 1.00770328 0.869504408 0.848380585 1.071690709 1 17.65819888 -5.271024257 24.99186225 0.96858349 1.244794242 0.624545774 0.098916227 432.4811797 1127662.098 0.028700039 0.043197343 5.36E-06 5.271024257 0.276210752 STFS(ph)PAPRPEMPGTVEVESTFLAR ddPTM_HeLa_A486_30min_R1 2 STFSPAPRPEMPGTVEVESTFLAR 24 1 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 S(0.07)T(0.07)FS(0.86)PAPRPEMPGTVEVESTFLAR;ST(0.002)FS(0.998)PAPRPEMPGTVEVESTFLAR ; 139.72 2.93E-07 276650000 145108 132090 97378 46426 131417 122395 144157 135617 121387 152000 TRUE FALSE FALSE 134936.6785 121622.7073 135085.3695 108082.0742 114933.4544 107295.1493 108087.3939 104739.9696 131908.9229 113938.2106 1.184296978 1.067444421 1.185601992 0.948602524 1.008734943 0.941695931 0.948649213 0.919269918 1.157723315 1 16.79789213 -5.264416142 24.9989019 0.983015728 1.137947462 0.51003516 0.06999913 203.4777927 1708815.279 0.018869281 0.029420969 5.44E-06 5.264416142 0.154931734 STFS(ph)PISDIGLAK ddPTM_HeLa_A485_30min_R1 1 STFSPISDIGLAK 13 0 Q8TEK3-1;Q8TEK3;H7C2S2 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 STFS(1)PISDIGLAK 196.84 2.69E-19 40285000 40384 47814 40121 52543 65891 53629 77630 79286 45848 79964 TRUE FALSE FALSE 49367.28148 53405.43137 54963.42747 55413.29104 59330.66068 56436.93151 61043.71632 59840.98418 55049.27306 60030.44643 0.82237072 0.889639084 0.915592516 0.923086439 0.98834282 0.940138461 1.016879266 0.996843897 0.91702255 1 15.87340678 -3.733749219 0.526032998 0.982510121 0.611420694 0.736927844 0.029397811 3.496284865 0.492841522 0.016339819 0.896647445 0.000184608 3.733749219 -0.371089427 STFS(ph)TNYR ddPTM_HeLa_A485_30min_R1 1 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.003)T(0.155)FS(0.791)T(0.051)NYR 126.29 0.00060044 236380000 195910 200000 216210 221700 305180 227420 341830 320870 209600 274590 TRUE FALSE FALSE 239489.5036 223388.2602 296195.0762 233810.9096 274795.2076 239327.3595 268795.228 242176.1294 251664.7974 206139.7665 1.161782162 1.083673782 1.436865295 1.134234862 1.333052872 1.160995589 1.303946505 1.174815192 1.220845457 1 17.65326332 -8.895969664 1.047746158 0.998640914 1.228499949 0.306916576 0.100768967 7.927018458 8.172609539 0.12514839 0.029031772 1.27E-09 8.895969664 0.229859035 STFS(ph)TNYR ddPTM_HeLa_A486_30min_R1 2 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.002)T(0.07)FS(0.854)T(0.073)NYR;S(0.001)T(0.066)FS(0.907)T(0.025)NYR ; 132.88 0.00051753 644300000 552920 609680 432050 251650 659960 572220 717060 718880 460070 580330 TRUE FALSE FALSE 514163.1633 561366.7364 599351.3307 585853.9177 577181.6629 501625.3143 537644.0037 555206.717 499949.238 435011.5907 1.18195279 1.29046386 1.37778244 1.346754731 1.326819044 1.153130917 1.235930295 1.276303273 1.14927797 1 18.73069432 -8.381897348 0.489880804 0.984856176 1.302183848 0.629749297 0.066144613 1.152609298 0.55755696 0.108487961 0.039559541 4.15E-09 8.381897348 0.317327672 STFSTNYR ddPTM_HeLa_A485_30min_R1 2 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 178.65 3.52E-06 129628000 72347 106133 103166 84307 137390 83519 123304 137790 94247 123119 FALSE FALSE TRUE 88440.34056 118544.3311 141331.3965 88912.47793 123710.9692 87891.9257 96959.0931 103996.7865 113161.5084 92427.69914 0.956859701 1.282562827 1.529102183 0.961967882 1.338462067 0.950926254 1.049026363 1.12516905 1.224324629 1 16.49603765 -6.259478672 24.9992564 1.076408397 1.221138711 0.147685773 0.172041485 371.6341758 4738387.834 0.058362373 0.0555966 5.50E-07 6.259478672 0.144730314 STFSTNYR ddPTM_HeLa_A486_30min_R1 1 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 142.19 0.017291 139850000 127080 115790 101920 48672 184980 113660 163570 163270 113560 149020 FALSE FALSE TRUE 118172.3482 106614.3787 141386.1535 113310.8757 161778.0835 99637.78481 122643.0559 126096.9852 123403.4722 111704.422 1.05790215 0.954432929 1.26571671 1.01438129 1.448269286 0.891977085 1.097924806 1.128845061 1.104732203 1 16.76932677 -9.665681266 13.89310564 0.999999938 1.108649757 0.044233621 0.149245239 0 0 0.137860259 0.033436024 2.16E-10 9.665681266 0.108649818 STFVLDEFK(ac)R ddPTM_HeLa_A486_30min_R1 1 STFVLDEFKR 10 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 STFVLDEFK(1)R 87.298 0.0012741 0 13092 17820 19052 11335 23781 18876 22166 23761 17040 21966 FALSE TRUE FALSE 12174.31841 16407.8783 26429.44463 26388.45284 20798.16523 16547.27104 16619.83235 18351.139 18517.04092 16465.57063 0.739380291 0.996496184 1.605133841 1.602644296 1.263130547 1.004961894 1.009368745 1.114515823 1.124591509 1 14.00716489 -6.251107002 22.29168623 1.055262423 1.26803505 0.127882226 0.243893423 364.8312978 787106.8587 0.090436971 0.08923792 5.61E-07 6.251107002 0.212772627 STFVLDEFKR ddPTM_HeLa_A485_30min_R1 2 STFVLDEFKR 10 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 118.4 0.0020977 50474000 23281.9 27053 22065 32952 37633 35788 42173 44990 26486 44161 FALSE FALSE TRUE 28460.87833 30216.61302 30227.7617 34752.08432 33886.12638 37661.80434 33162.39403 33956.13196 31801.49726 33152.47542 0.85848426 0.911443644 0.911779929 1.048250059 1.022129598 1.136017865 1.000299181 1.024241223 0.959249554 1 15.01682898 -5.187407711 4.257494929 1.031510194 0.891013487 0.649261662 0.044938484 0.140930828 4.882026995 0.012804242 0.02285843 6.50E-06 5.187407711 -0.140496708 STGEAFVQFASQEIAEK(ac)ALKK ddPTM_HeLa_A485_30min_R1 1 STGEAFVQFASQEIAEKALKK 21 2 P55795;E5RGV0;E5RGH4;G8JLB6;P31943;E9PCY7;H0YB39;D6RBM0;E7EN40 P55795;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 1 STGEAFVQFASQEIAEK(0.994)ALK(0.006)K 98.175 0.00040571 6235100 2222.7 2081.2 1763.1 2774.9 2965.6 2460.8 4133 4490.4 2628.7 3925.1 FALSE TRUE FALSE 2717.131947 2324.578236 2415.344059 2926.485761 2670.334451 2589.643683 3249.950786 3389.122359 3156.255978 2946.644806 0.922110443 0.788889869 0.819692979 0.993158644 0.906228822 0.878844874 1.102932657 1.15016318 1.071135541 1 11.52485745 -6.760644233 24.99641639 1.093571475 0.883397579 0.698445204 0.062950301 11.75549349 369567.4371 0.026195718 0.019079716 1.74E-07 6.760644233 -0.210173896 STGGAPTFNVTVTK ddPTM_HeLa_A485_30min_R1 2 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ; ; 366.53 1.53E-133 1422630000 1266920 1299280 1053940 1466050 1761490 1325460 1983900 1969240 1083350 1845420 FALSE FALSE TRUE 1548741.983 1451219.494 1443836.264 1546136.599 1586109.871 1394859.036 1560023.558 1486280.802 1300768.408 1385390.756 1.117909858 1.047516368 1.04218702 1.116029245 1.144882672 1.006834375 1.126053101 1.072824252 0.938918065 1 20.40186152 -7.710118274 7.334275854 0.969830427 1.083899491 0.531087392 0.043183342 0.147777747 17.37514491 0.029659012 0.010843286 1.95E-08 7.710118274 0.114069064 STGGAPTFNVTVTK ddPTM_HeLa_A486_30min_R1 2 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ; ; 352.04 6.30E-115 656010000 1014710 972390 649430 365160 1145240 1092250 1263330 1271870 878110 1198950 FALSE FALSE TRUE 943584.069 895334.275 900906.6883 850110.9342 1001593.32 957499.3002 947231.4719 982292.9657 954225.2818 898725.1161 1.049913986 0.996227054 1.002427408 0.945907618 1.114460142 1.065397287 1.053972405 1.092984883 1.061754328 1 19.7775204 -5.765044026 24.99970367 1.068903081 0.998720192 0.442110169 0.036220548 81.05283905 562135.7878 0.010725759 0.012644319 1.72E-06 5.765044026 -0.070182889 STGGK(ac)APR ddPTM_HeLa_A485_30min_R1 2 STGGKAPR 8 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; STGGK(1)APR;STGGK(1)APR 153.04 0.00093293 6057800000 1330710 2001680 2004380 2375100 2388200 1202260 2274900 6863500 2989600 14181100 FALSE TRUE FALSE 1626721.849 2235759.064 2745883.571 2504845.699 2150422.423 1265208.475 1788849.031 5180215.863 3589585.298 10646012.75 0.152801043 0.210009054 0.257926008 0.235284867 0.201993222 0.118843412 0.168029954 0.486587419 0.337176498 1 23.34380986 -8.515486685 0.735288547 1.009285285 0.193274004 0.901312483 0.078153232 0.494590987 0.439861361 0.088922194 0.028996677 3.05E-09 8.515486685 -0.816011282 STGGK(ac)APR ddPTM_HeLa_A486_30min_R1 2 STGGKAPR 8 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; STGGK(1)APR;STGGK(1)APR 130.28 0.0060791 2065700000 2672900 2157800 2243300 1026500 2334100 2999200 2973700 2254800 2684200 2410300 FALSE TRUE FALSE 2485543.513 1986808.069 3111965.838 2389743.876 2041335.413 2629189.198 2229648.807 1741431.262 2916868.617 1806745.192 1.375702299 1.099661468 1.722415453 1.322678974 1.129841343 1.455207524 1.234069319 0.96384995 1.614432755 1 20.78496162 -13.42458001 0.183752658 2.27E-10 1.377567728 0.148005471 0.222946192 207.8657184 2.438592131 77.2793769 0.659530111 3.76E-14 13.42458001 1.377567728 STGHT(ph)PTKPSGSSVSEK ddPTM_HeLa_A485_30min_R1 2 STGHTPTKPSGSSVSEK 17 1 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 S(0.02)T(0.02)GHT(0.93)PT(0.03)KPSGSSVSEK;S(0.177)T(0.177)GHT(0.631)PT(0.015)KPSGSSVSEK ; 135.21 8.21E-06 1738510000 798470 702210 465150 832290 978930 839070 1266930 1328420 733880 1197280 TRUE FALSE FALSE 976086.8968 784327.3511 637228.3415 877755.8952 881464.292 883002.4078 996240.0556 1002622.912 881162.9845 898820.1303 1.08596466 0.872618808 0.708960914 0.976564571 0.980690421 0.982401682 1.108386452 1.115487825 0.980355195 1 19.77767291 -5.981535255 1.629753485 1.052778528 0.890506722 0.278085676 0.097420526 0.453786021 2.456827338 0.039489217 0.044426184 1.04E-06 5.981535255 -0.162271806 STGHT(ph)PTKPSGSSVSEK ddPTM_HeLa_A486_30min_R1 2 STGHTPTKPSGSSVSEK 17 1 Q8NI08-7;Q8NI08-2;Q8NI08 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 S(0.071)T(0.071)GHT(0.856)PT(0.002)KPSGSSVSEK;S(0.159)T(0.159)GHT(0.681)PT(0.001)KPSGSSVSEK ; 149.71 5.76E-08 1391520000 1463010 1258610 620020 293340 1259420 1450290 1724290 1625990 993610 1478810 TRUE FALSE FALSE 1360460.554 1158873.16 860108.3487 682910.3446 1101451.8 1271367.965 1292854.404 1255787.572 1079736.915 1108506.351 1.227291619 1.045436645 0.775916483 0.616063538 0.993635985 1.146919875 1.16630311 1.132864572 0.974046666 1 20.0801856 -6.001577973 24.99968598 1.094451475 0.901573609 0.192988312 0.160282271 98.69137753 1563599.709 0.054783779 0.061249351 9.96E-07 6.001577973 -0.192877866 STGS(ph)ATSLASQGER ddPTM_HeLa_A486_30min_R1 1 STGSATSLASQGER 14 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 STGS(0.504)AT(0.119)S(0.377)LASQGER 169.67 2.12E-10 0 230120 261750 235340 64334 284950 248870 262100 271010 245010 242630 TRUE FALSE FALSE 213989.7763 241007.9767 326469.9506 149772.8033 249208.9139 218166.9497 196519.8078 209306.9391 266247.6641 181873.8687 1.176583408 1.325138011 1.795034949 0.823498198 1.370229355 1.199550827 1.080528001 1.150835689 1.463913788 1 17.47257875 -5.265251294 24.99420038 1.169450494 1.421540698 0.243874456 0.222119925 504.4525695 3307629.899 0.060835711 0.094297386 5.43E-06 5.265251294 0.252090204 STGS(ph)PTQETQAPFIAK ddPTM_HeLa_A485_30min_R1 4 STGSPTQETQAPFIAK 16 0 O15231-3;H0Y704;O15231-2 O15231-3 ZNF185 Zinc finger protein 185 1 0 S(0.025)T(0.025)GS(0.949)PTQETQAPFIAK;S(0.03)T(0.03)GS(0.94)PTQETQAPFIAK;STGS(1)PTQETQAPFIAK;STGS(0.999)PTQETQAPFIAK ;;; 309.98 4.11E-78 1031220000 804410 740810 643930 1035500 1232010 834350 1182460 1298840 923050 1309600 TRUE FALSE FALSE 983348.2293 827441.2853 882146.5032 1092066.743 1109346.759 878035.2758 929817.7612 980297.4535 1108297.668 983140.8214 1.000210965 0.841630484 0.897273802 1.110793814 1.128370152 0.893092075 0.945762541 0.997107873 1.127303072 1 19.90703855 -5.232845774 24.32356207 1.023817555 0.905897581 0.294448276 0.081711344 693.8304463 590215.1825 0.023501934 0.040696077 5.85E-06 5.232845774 -0.117919974 STGS(ph)PTQETQAPFIAK ddPTM_HeLa_A486_30min_R1 4 STGSPTQETQAPFIAK 16 0 O15231-3;H0Y704;O15231-2 O15231-3 ZNF185 Zinc finger protein 185 1 0 S(0.024)T(0.024)GS(0.952)PTQETQAPFIAK;STGS(1)PTQETQAPFIAK;STGS(1)PTQETQAPFIAK;S(0.002)T(0.002)GS(0.996)PTQETQAPFIAK ;;; 322.75 9.26E-79 1107510000 941180 1000940 646240 400078 1037110 1032200 1271840 1243750 826720 1055890 TRUE FALSE FALSE 875208.1423 921621.869 896481.4349 931401.8028 907025.9931 904857.6586 953612.1798 960575.2759 898380.7552 791488.2713 1.105775251 1.164416331 1.132652836 1.176772716 1.14597528 1.143235714 1.204834253 1.213631725 1.135052518 1 19.59420845 -8.029238205 24.03658033 0.999999999 1.161826679 0.711492696 0.030583118 1181.05198 970935.8008 0.030641838 0.007911689 9.35E-09 8.029238205 0.16182668 STGSPASLASNLEIS(ph)QSPTMPFLSLHR ddPTM_HeLa_A486_30min_R1 1 STGSPASLASNLEISQSPTMPFLSLHR 27 0 A0A087WVI8;Q8IUC6 A0A087WVI8 TICAM1 TIR domain-containing adapter molecule 1 1 0 STGSPASLASNLEIS(0.608)QS(0.357)PT(0.034)MPFLS(0.001)LHR 70.268 0.0073623 135390000 26864 28875 25149 8054.2 42065 21197 28431 27855 23637 19499 TRUE FALSE FALSE 24980.97233 26586.83984 34887.36631 18750.58464 36788.81546 18581.92966 21317.26309 21513.02457 25685.87419 14616.32348 1.709114632 1.81898272 2.386876998 1.28285233 2.516967793 1.27131352 1.458455891 1.471849237 1.757341661 1 13.83529285 -6.309228282 24.99983574 1.425449027 1.924062067 0.35736899 0.367734871 482.2179879 252261.5379 0.122033976 0.107624082 4.91E-07 6.309228282 0.49861304 STGSPASLASNLEISQS(ph)PTMPFLSLHR ddPTM_HeLa_A485_30min_R1 2 STGSPASLASNLEISQSPTMPFLSLHR 27 0 A0A087WVI8;Q8IUC6 A0A087WVI8 TICAM1 TIR domain-containing adapter molecule 1 1 0 STGSPASLASNLEISQS(0.998)PT(0.002)MPFLSLHR;STGSPASLASNLEIS(0.004)QS(0.991)PT(0.004)MPFLSLHR ; 176.9 8.14E-15 331360000 107353 157128 144848 65046 169581 97664 153248 144848 102020 101730 TRUE FALSE FALSE 131233.3045 175502.7528 198433.3028 68599.29827 152696.9202 102777.536 120505.3129 109323.8009 122494.4782 76370.5832 1.718375047 2.29804128 2.598294978 0.898242431 1.999420638 1.345773879 1.577902221 1.431490979 1.603948446 1 16.22072942 -3.132750869 0.1354266 0.831220559 3.831624709 0.319955535 0.418964042 51.71241331 0.826647762 2.441023984 28.00774077 0.00073663 3.132750869 3.000404151 STGSPASLASNLEISQS(ph)PTMPFLSLHR ddPTM_HeLa_A486_30min_R1 1 STGSPASLASNLEISQSPTMPFLSLHR 27 0 A0A087WVI8;Q8IUC6 A0A087WVI8 TICAM1 TIR domain-containing adapter molecule 1 1 0 STGSPASLASNLEIS(0.042)QS(0.783)PT(0.174)MPFLSLHR 103.01 0.00062419 132430000 41222 41926 37254 0 64213 31801 40488 38998 38376 20338 TRUE FALSE FALSE 38332.55067 38603.63107 51679.7465 0 56158.80678 27877.71595 30357.47416 30119.00672 41702.46258 15245.23242 2.514395951 2.532177274 3.389895612 0 3.683696334 1.828618625 1.991276572 1.975634473 2.735442886 1 13.89607052 -10.95845309 2.579877183 0.004129956 2.27513859 0.141803357 0.954349375 6484091.2 3114861.045 38553214.35 0.225775805 1.10E-11 10.95845309 2.271008634 STGVSFWTQDSDENEQEQQS(ph)DTEEGSNKKETQTDSISR ddPTM_HeLa_A485_30min_R1 1 STGVSFWTQDSDENEQEQQSDTEEGSNKKETQTDSISR 38 2 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIM2;H0YIS3 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 STGVSFWTQDSDENEQEQQS(0.985)DT(0.015)EEGSNKKETQTDSISR 145.84 4.75E-10 477980000 135990 168000 147380 252600 332070 140950 265740 231470 134770 333530 TRUE FALSE FALSE 166240.5063 187646.1386 201901.995 266398.8984 299007.9448 148329.924 208962.4781 174701.6196 161817.1028 250387.1092 0.663933966 0.749424119 0.806359384 1.063948137 1.194182663 0.592402399 0.834557653 0.697726094 0.646267707 1 17.93380076 STIFIS(ph)PSSVK ddPTM_HeLa_A485_30min_R1 4 STIFISPSSVK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 STIFIS(0.99)PS(0.01)SVK;STIFIS(0.997)PS(0.003)SVK;STIFIS(0.999)PS(0.001)SVK;STIFIS(0.983)PS(0.017)SVK ;;; 222.73 6.23E-18 892010000 1262790 1213010 992730 1558260 1713220 1339260 1898700 1901160 1172530 2188310 TRUE FALSE FALSE 1543693.279 1354860.968 1359982.138 1643383.798 1542645.801 1409381.583 1493027.234 1434897.529 1407846.016 1642804.59 0.939669446 0.824724362 0.827841696 1.000352573 0.939031831 0.857911885 0.908828258 0.873443828 0.856977162 1 20.64772945 -11.33749544 2.266829692 1.630489042 0.891719929 0.273162207 0.052805506 6629766.949 739344.9949 21507980.53 0.013956338 4.60E-12 11.33749544 -0.738769114 STIFIS(ph)PSSVK ddPTM_HeLa_A486_30min_R1 2 STIFISPSSVK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 STIFIS(1)PSSVK;STIFIS(1)PSSVK ; 222.79 6.19E-18 683180000 1748940 1766180 934270 746570 1713050 1816350 2124350 2051230 1354420 2234080 TRUE FALSE FALSE 1626348.338 1626221.464 1296044.365 1738052.69 1498183.295 1592267.204 1592815.161 1584209.707 1471822.216 1674651.827 0.9711561 0.97108034 0.7739187 1.037859131 0.894623749 0.950804925 0.951132131 0.945993479 0.878882519 1 20.67542975 STIGVMVTAS(ph)HNPEEDNGVK ddPTM_HeLa_A485_30min_R1 12 STIGVMVTASHNPEEDNGVK 20 0 A0A494C0G1;H0Y987;O95394;O95394-3;O95394-4;D6RC77;D6RCQ8;D6RF77;A0A494C163;A0A494C099 A0A494C0G1 PGM3 Phosphoacetylglucosamine mutase 1 0 STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVT(0.007)AS(0.993)HNPEEDNGVK;STIGVMVT(0.003)AS(0.997)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVT(0.01)AS(0.99)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVT(0.04)AS(0.96)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK ;;;;;;;;;;; 332.25 3.29E-114 26994220000 10964630 9580940 8350670 15453620 14215940 10037830 15753020 13357190 10329410 20887550 TRUE FALSE FALSE 13403674.12 10701347.59 11439930.33 16297812.13 12800551.1 10563395.26 12387258.59 10081318.21 12402427.84 15680668.19 0.854789729 0.68245482 0.729556304 1.039356992 0.81632689 0.673657215 0.789970072 0.642913815 0.790937458 1 23.9024837 -6.035915082 24.64068095 0.756405747 0.824135545 0.015346952 0.125564132 1605.343272 1101393.131 0.041502913 0.041518989 9.21E-07 6.035915082 0.067729798 STIGVMVTAS(ph)HNPEEDNGVK ddPTM_HeLa_A486_30min_R1 15 STIGVMVTASHNPEEDNGVK 20 0 A0A494C0G1;H0Y987;O95394;O95394-3;O95394-4;D6RC77;D6RCQ8;D6RF77;A0A494C163;A0A494C099 A0A494C0G1 PGM3 Phosphoacetylglucosamine mutase 1 0 STIGVMVT(0.049)AS(0.951)HNPEEDNGVK;STIGVMVT(0.022)AS(0.977)HNPEEDNGVK;STIGVMVT(0.004)AS(0.996)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVT(0.002)AS(0.998)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVT(0.031)AS(0.969)HNPEEDNGVK;STIGVMVT(0.089)AS(0.911)HNPEEDNGVK;STIGVMVT(0.001)AS(0.999)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.167)AS(0.833)HNPEEDNGVK;STIGVMVT(0.104)AS(0.896)HNPEEDNGVK ;;;;;;;;;;;;;; 314.76 6.06E-102 32883690000 15971347 15857922 8862769 7576240 14792372 18640836 22192462 21554122 13846645 22113372 TRUE FALSE FALSE 14851838.05 14601282.51 12294670.51 17637869.6 12936974.77 16341119.18 16639673.28 16646718.94 15046883.34 16576039.72 0.895982292 0.880866767 0.741713384 1.064058117 0.780462341 0.985827704 1.003838888 1.004263939 0.907748992 1 23.98259603 -6.309215578 24.46233353 0.982071409 0.87643813 0.292981391 0.083540803 413.9883152 211968.5928 0.028266759 0.024928992 4.91E-07 6.309215578 -0.105633279 STKPVVFS(ph)PTLMLTDEEK ddPTM_HeLa_A485_30min_R1 1 STKPVVFSPTLMLTDEEK 18 1 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 S(0.01)T(0.01)KPVVFS(0.979)PTLMLTDEEK 154.1 9.53E-09 213200000 104740 204500 228440 114130 290750 153120 155770 190390 173690 143040 TRUE FALSE FALSE 128039.0517 228414.4961 312949.4622 120364.6329 261801.9091 161137.1264 122488.467 143696.554 208547.9898 107382.7605 1.192361335 2.127105833 2.914336164 1.120893451 2.438025508 1.500586554 1.140671617 1.33817154 1.942099355 1 16.71240287 -6.494018992 19.89548805 1.374446874 1.973957137 0.219603622 0.545906852 88.49310431 61005.85784 0.189731056 0.166626376 3.21E-07 6.494018992 0.599510263 STKPVVFS(ph)PTLMLTDEEK ddPTM_HeLa_A486_30min_R1 1 STKPVVFSPTLMLTDEEK 18 1 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 STKPVVFS(0.999)PT(0.001)LMLTDEEK 157.3 4.31E-09 252090000 185250 172440 150170 76519 201560 164530 207100 194250 173150 217950 TRUE FALSE FALSE 172264.9316 158775.2264 208319.8457 178140.0991 176278.4653 144231.9614 155281.3895 150023.5154 188158.7814 163373.9014 1.054421362 0.971851838 1.27511092 1.090382843 1.078987916 0.882833551 0.950466312 0.91828324 1.151706483 1 17.31781801 -6.091611662 7.663922442 0.973796367 1.09955805 0.25635568 0.096695068 0.3964157 29.45903383 0.032434651 0.032503652 8.10E-07 6.091611662 0.125761683 STLESEKPGS(ph)PEAAET(ph)SPPSNIIDHCEK ddPTM_HeLa_A485_30min_R1 1 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 STLES(0.002)EKPGS(0.998)PEAAET(0.63)S(0.369)PPSNIIDHCEK 146.57 1.02E-07 1535600000 148950 114250 77157 292320 181850 151190 279130 243350 120660 357050 TRUE FALSE FALSE 182083.4136 127610.5437 105700.5851 308288.7014 163744.3755 159106.0746 219491.5952 183668.0309 144875.3552 268044.006 0.67930418 0.476080572 0.394340417 1.15014212 0.610886167 0.593581916 0.818864031 0.68521596 0.540490934 1 18.03211035 STLESEKPGS(ph)PEAAET(ph)SPPSNIIDHCEK ddPTM_HeLa_A486_30min_R1 2 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 STLESEKPGS(1)PEAAET(0.624)S(0.375)PPS(0.001)NIIDHCEK;STLES(0.006)EKPGS(0.994)PEAAET(0.527)S(0.471)PPS(0.002)NIIDHCEK ; 168.48 1.36E-12 2229900000 749570 713050 308780 402750 609980 894100 1197090 1105310 606570 1386540 TRUE FALSE FALSE 697029.0138 656545.3211 428347.8854 937622.3539 533470.6206 783795.0325 897565.4205 853655.0417 659147.976 1039341.359 0.670644931 0.631693635 0.412133975 0.902131283 0.513277583 0.754126665 0.863590593 0.821342319 0.634197774 1 19.98723814 -13.99994593 0.066102454 2.139528812 0.259025228 0.361693898 0.138088646 361.8162198 1.728554312 63.60260395 8.855633163 1.00E-14 13.99994593 -1.880503584 STLESEKPGS(ph)PEAAETS(ph)PPSNIIDHCEK ddPTM_HeLa_A485_30min_R1 1 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 STLESEKPGS(0.999)PEAAET(0.167)S(0.833)PPSNIIDHCEK 106.21 0.0010232 81620000 86590 54964 35060 143220 92316 69756 139270 119820 68510 174670 TRUE FALSE FALSE 105851.6468 61391.56168 48030.15297 151043.7459 83124.6949 73408.3163 109513.8268 90433.95713 82259.32859 131127.9836 0.807239186 0.468180475 0.366284539 1.151880337 0.633920332 0.559821895 0.835167474 0.689661769 0.62732093 1 17.00061607 -14 0.237248447 2.767048224 0.647857436 0.170968599 0.206935234 313.0521638 3.128728985 267.0450837 0.342176086 1.00E-14 14 -2.119190788 STLESEKPGS(ph)PEAAETSPPSNIIDHCEK ddPTM_HeLa_A485_30min_R1 1 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 STLESEKPGS(1)PEAAETSPPSNIIDHCEK 261.71 1.54E-63 216310000 122340 74770 59308 194850 143180 124800 230490 170680 104610 274930 TRUE FALSE FALSE 149554.1109 83513.70109 81248.49721 205494.1621 128924.4965 131334.335 181243.9286 128820.4624 125604.2675 206395.0107 0.724601387 0.404630426 0.393655336 0.995635318 0.624649288 0.636325145 0.878141036 0.624145235 0.608562518 1 17.65504857 -14 0.099412666 2.015407753 0.431495876 0.262872302 0.1745805 270.8439088 1.831096084 58.22625674 3.119393545 1.00E-14 14 -1.583911877 STLESEKPGS(ph)PEAAETSPPSNIIDHCEK ddPTM_HeLa_A486_30min_R1 3 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 STLES(0.001)EKPGS(0.999)PEAAETSPPSNIIDHCEK;S(0.027)T(0.027)LES(0.087)EKPGS(0.858)PEAAETSPPSNIIDHCEK;STLES(0.009)EKPGS(0.991)PEAAETSPPSNIIDHCEK ;; 219.77 1.38E-38 2771360000 608685 588832 293683 266689 546216 681020 965150 840480 469431 904250 TRUE FALSE FALSE 566019.3248 542170.8078 407404.9227 620865.4697 477704.496 597002.6765 723659.2617 649121.0515 510121.657 677819.9143 0.835058565 0.799874416 0.601051864 0.915974076 0.704766098 0.880768865 1.06762762 0.957660048 0.752591723 1 19.3705425 -6.49113203 7.679170445 0.945693375 0.773251978 0.370924049 0.107006845 0.264364181 55.30119127 0.038162633 0.032819322 3.23E-07 6.49113203 -0.172441396 STLGQYS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 STLGQYSPLR 10 0 Q9P2B7 Q9P2B7 CFAP97 Cilia- and flagella-associated protein 97 1 0 STLGQYS(1)PLR;STLGQYS(1)PLR ; 118.88 0.00031806 0 176195 217892 201319 178765 295510 209881 257170 284120 189275 274010 TRUE FALSE FALSE 215388.9699 243372.574 275795.2757 188530.4793 266087.9868 220870.0446 202223.5286 214439.1245 227260.7564 205704.3498 1.047080288 1.183118268 1.340736236 0.916511875 1.293545747 1.073725689 0.983078524 1.042462761 1.104793149 1 17.65021278 -6.509198497 24.52152476 1.03501929 1.157530757 0.207893679 0.114828761 811.4787699 1454561.754 0.040298956 0.034026375 3.10E-07 6.509198497 0.122511468 STLGQYS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 STLGQYSPLR 10 0 Q9P2B7 Q9P2B7 CFAP97 Cilia- and flagella-associated protein 97 1 0 STLGQYS(1)PLR;STLGQYS(1)PLR ; 132.99 6.29E-05 430030000 232020 232920 168938 79567 244100 237284 243220 258090 203748 239920 TRUE FALSE FALSE 215756.5962 214462.5709 234355.3179 185235.9971 213482.7019 208010.3126 182363.7835 199328.5411 221409.0407 179842.4704 1.199697689 1.192502363 1.303114428 1.029990284 1.187053878 1.156625085 1.014019564 1.108350773 1.231127665 1 17.45637423 -5.259944261 24.99976288 1.110314628 1.227844578 0.368705884 0.076311306 159.4995968 2666954.018 0.020816468 0.033763447 5.50E-06 5.259944261 0.11752995 STLINSLFLTDLYSPEYPGPSHR ddPTM_HeLa_A486_30min_R1 1 STLINSLFLTDLYSPEYPGPSHR 23 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRH9;A0A0U1RRE1;A0A5F9ZGZ7 G3V1Q4 7-Sep Septin-7 0 0 161.68 1.22E-17 17812000 3085.4 4261.8 4665.2 1441.5 5584.8 4112.2 5599.7 4899.9 4411.9 5182.3 FALSE FALSE TRUE 2869.129393 3924.079447 6471.690378 3355.884849 4884.302308 3604.878574 4198.595832 3784.299734 4794.327044 3884.618349 0.738587201 1.010158295 1.66597843 0.86389049 1.257344189 0.927987836 1.080825825 0.974175426 1.234182258 1 11.92355715 -6.272073137 24.42997147 1.044157235 1.119327954 0.015518886 0.24449986 3033.773861 6969761.541 0.086205298 0.076803641 5.34E-07 6.272073137 0.075170719 STLLLLLTGK ddPTM_HeLa_A486_30min_R1 1 STLLLLLTGK 10 0 Q8NE71;Q8NE71-2;H0YGW7 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 0 139.96 0.00058754 0 14355 10998 7530.1 6423.3 11942 12825 16376 14172 12892 18036 FALSE FALSE TRUE 13348.78863 10126.47843 10445.95638 14953.76702 10444.12301 11242.7819 12278.55159 10945.34497 14009.48894 13519.66821 0.987360668 0.749018265 0.772648872 1.106075 0.772513263 0.831587116 0.908199181 0.809586804 1.036230233 1 13.72277213 -7.770087423 24.99724212 1.018115222 0.865033639 0.248289117 0.105039037 286.7148055 828720.1934 0.09351932 0.025657287 1.70E-08 7.770087423 -0.153081583 STLMGHMLYLLGNINKR ddPTM_HeLa_A485_30min_R1 4 STLMGHMLYLLGNINKR 17 1 Q9Y450;E9PS53;E9PHZ9;B7Z524;H0YDX7;J3QT46;Q9Y450-4 Q9Y450 HBS1L HBS1-like protein 0 0 ;;; ;;; 150.57 2.71E-09 161734500 258175 397954 322605 201904 484309 274048 509956 560456 224397 374543 FALSE FALSE TRUE 315605.1381 444491.2586 441950.0142 212933.5043 436089.4954 288396.7295 400999.7346 423003.2872 269431.4196 281176.3231 1.122445641 1.580827481 1.571789578 0.757295287 1.550946718 1.025679283 1.426150432 1.504405786 0.958229401 1 18.10111559 -7.780061187 24.98538452 0.979114226 1.317710312 0.21388063 0.259451055 424.3268859 569314.8499 0.24085769 0.062637703 1.66E-08 7.780061187 0.338596086 STLMGHMLYLLGNINKR ddPTM_HeLa_A486_30min_R1 3 STLMGHMLYLLGNINKR 17 1 Q9Y450;E9PS53;E9PHZ9;B7Z524;H0YDX7;J3QT46;Q9Y450-4 Q9Y450 HBS1L HBS1-like protein 0 0 ;; ;; 179.56 5.55E-14 127949900 230577 215369 146980 56308.7 238360 166896 287125 245640 184914 239958 FALSE FALSE TRUE 214414.743 198302.3761 203894.5923 131089.4993 208462.6662 146306.0684 215283.2881 189713.1343 200942.4944 179870.9549 1.192047616 1.102470247 1.133560404 0.728797483 1.158956799 0.813394628 1.196876328 1.054718002 1.117148094 1 17.45660272 -5.051233136 24.99996517 1.011383771 1.139950169 0.161141861 0.138763261 626.604278 305759.968 0.036465771 0.063161472 8.89E-06 5.051233136 0.128566398 STLNPQWNES(ph)FTFK ddPTM_HeLa_A485_30min_R1 3 STLNPQWNESFTFK 14 0 P17252;J3KRN5 P17252 PRKCA Protein kinase C alpha type 1 0 STLNPQWNES(0.999)FT(0.001)FK;STLNPQWNES(1)FTFK;STLNPQWNES(0.813)FT(0.187)FK ;; 328.59 3.76E-81 2041890000 1192258 1033496 757394 1195308 1338954 1110130 1973700 1857730 948409 1821040 TRUE FALSE FALSE 1457471.679 1154354.367 1037585.558 1260604.649 1205643.038 1168254.69 1552002.871 1402118.805 1138745.987 1367088.242 1.066113828 0.844389068 0.758974825 0.922109203 0.881905792 0.8545569 1.135261663 1.025624215 0.832971824 1 20.38267494 -6.709495242 24.99999807 1.000601677 0.881432953 0.22533032 0.099855936 145.7174019 70131.28097 0.038614425 0.029910571 1.95E-07 6.709495242 -0.119168724 STLNPQWNES(ph)FTFK ddPTM_HeLa_A486_30min_R1 2 STLNPQWNESFTFK 14 0 P17252;J3KRN5 P17252 PRKCA Protein kinase C alpha type 1 0 STLNPQWNES(1)FTFK;STLNPQWNES(1)FTFK ; 373.42 1.62E-109 1376480000 1377050 1503980 911870 629050 1400040 1710740 2054610 1968450 1218710 2027890 TRUE FALSE FALSE 1280525.906 1384799.147 1264970.485 1464460.19 1224433.928 1499686.292 1540524.847 1520276.906 1324348.764 1520093.145 0.842399632 0.910996245 0.83216643 0.963401615 0.805499277 0.986575262 1.013441085 1.000120888 0.871228693 1 20.5357283 -6.285954503 24.77388848 0.976728748 0.876108546 0.464967248 0.055275545 639.5677217 646316.0892 0.018688838 0.016489658 5.18E-07 6.285954503 -0.100620202 STLPDADRER ddPTM_HeLa_A485_30min_R1 4 STLPDADRER 10 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ;;; ;;; 129.89 0.000855 1005080000 483971 678235 752301 587773 1032020 692784 904015 1033623 717380 792078 FALSE FALSE TRUE 591628.6793 757548.6834 1030608.446 619881.5507 929268.4652 729057.099 710864.8101 780125.3386 861351.5858 594627.5317 0.994956755 1.273988578 1.733200013 1.042470316 1.562774032 1.226073567 1.19547914 1.311956304 1.448556516 1 19.18162674 STLPDADRER ddPTM_HeLa_A486_30min_R1 2 STLPDADRER 10 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 110.84 0.00091014 725700000 436720 450540 440530 186000 695300 431910 545480 576640 395100 473850 FALSE FALSE TRUE 406108.1832 414837.5696 611115.0138 433017.3999 608088.9906 378625.3355 408995.1345 445351.66 429347.5861 355194.8758 1.143339082 1.167915412 1.720506278 1.219098105 1.711986946 1.065965084 1.151466878 1.253823437 1.208766273 1 18.43825124 -6.355005561 24.70570157 1.152834176 1.38881379 0.291396951 0.199136807 73.9085608 19510.08729 0.069768658 0.061530181 4.42E-07 6.355005561 0.235979614 STLT(ph)PTQR ddPTM_HeLa_A486_30min_R1 2 STLTPTQR 8 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.002)T(0.006)LT(0.992)PTQR;S(0.03)T(0.092)LT(0.877)PT(0.001)QR ; 108.15 0.0063467 142990000 524170 632920 560260 181326 701700 510410 550050 496720 511480 464690 TRUE FALSE FALSE 487428.3898 582765.1141 777207.6763 422136.0917 613686.2429 447440.8037 412421.6722 383627.6993 555815.4982 348328.5994 1.399334969 1.673032634 2.231248533 1.211890417 1.761802631 1.284536511 1.184001753 1.101338506 1.595664264 1 18.4100894 -6.331686326 5.42417222 1.231079143 1.663523211 0.35470376 0.285106641 0.258493774 14.36319721 0.100856928 0.089038217 4.66E-07 6.331686326 0.432444068 STLTTLPFPGAEANS(ph)PGK ddPTM_HeLa_A485_30min_R1 1 STLTTLPFPGAEANSPGK 18 0 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 STLTTLPFPGAEANS(1)PGK 159.81 3.98E-10 77344000 100780 111060 70038 166870 105130 95624 138760 132850 65613 179310 TRUE FALSE FALSE 123198.1633 124047.5009 95947.97072 175985.6856 94662.88807 100630.7248 109112.7924 100268.3292 78780.92726 134611.317 0.915214011 0.921523567 0.712777892 1.30736174 0.703231275 0.747565116 0.810576665 0.744872953 0.58524743 1 17.03844018 STLTTLPFPGAEANS(ph)PGKAEAEKPR ddPTM_HeLa_A485_30min_R1 3 STLTTLPFPGAEANSPGKAEAEKPR 25 2 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 STLTTLPFPGAEANS(1)PGKAEAEKPR;STLTTLPFPGAEANS(1)PGKAEAEKPR;STLTTLPFPGAEANS(1)PGKAEAEKPR ;; 196.01 8.58E-22 1669330000 594020 483090 318501 1164610 781010 678720 1173330 1192720 491420 1584440 TRUE FALSE FALSE 726157.6997 539583.1732 436327.7738 1228229.695 703249.9021 714256.7297 922638.4603 900203.5499 590043.4864 1189468.267 0.610489342 0.453633937 0.366825905 1.03258719 0.591230486 0.600484056 0.775673034 0.756811741 0.496056517 1 20.18188535 -14 0.092162659 2.04626363 0.37461135 0.273394659 0.179332878 291.0453264 1.852253825 61.1625541 4.024562761 1.00E-14 14 -1.67165228 STLTTLPFPGAEANS(ph)PGKAEAEKPR ddPTM_HeLa_A486_30min_R1 2 STLTTLPFPGAEANSPGKAEAEKPR 25 2 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 STLTTLPFPGAEANS(1)PGKAEAEKPR;STLTTLPFPGAEANS(1)PGKAEAEKPR ; 273.41 1.81E-75 901700000 873130 785210 287350 629811 672523 996330 1503210 1307950 592473 1717020 TRUE FALSE FALSE 811928.0958 722987.0999 398619.6155 1466231.837 588168.8943 873412.9345 1127090.959 1010158.337 643829.0367 1287067.016 0.630835913 0.561732288 0.309711624 1.139203956 0.456983892 0.678607193 0.875704951 0.784852945 0.500229614 1 20.29565574 -14 0.073034844 2.018230926 0.311350451 0.175199954 0.221760038 520.8286826 2.719944572 90.21000865 10.27243484 1.00E-14 14 -1.706880474 STMPTS(ph)LPNLAK ddPTM_HeLa_A485_30min_R1 1 STMPTSLPNLAK 12 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 1 0 STMPT(0.03)S(0.97)LPNLAK 103.44 0.00070352 174050000 290020 243310 145360 306150 285800 300410 396900 418400 234770 602410 TRUE FALSE FALSE 354533.9484 271762.988 199134.7129 322874.1993 257344.7485 316139.0031 312099.0726 315786.744 281886.1856 452240.2735 0.783950411 0.600926109 0.440329454 0.713943932 0.569044297 0.699050973 0.690117822 0.698272052 0.623310665 1 18.78672995 -14 0.267995917 3.432434823 0.61695471 0.577949074 0.090565808 147.0088947 1.43385518 197.4737201 0.114027861 1.00E-14 14 -2.815480113 STNNVERHT(ph)PR ddPTM_HeLa_A486_30min_R1 1 STNNVERHTPR 11 1 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 STNNVERHT(1)PR 92.468 0.0027425 57078000 21797 18326 25065 9815.3 29766 18471 24380 24342 15484 21259 TRUE FALSE FALSE 20269.14286 16873.78102 34770.83926 22850.51444 26032.47072 16192.23582 18279.86613 18799.85798 16826.16559 15935.60803 1.271940351 1.058872745 2.181958743 1.433927993 1.633603856 1.016104048 1.147108168 1.179738981 1.055884756 1 13.95996645 -6.263995651 24.98376294 1.095209677 1.523092813 0.384475707 0.27559988 264.7144088 2587180.358 0.097875796 0.090340027 5.45E-07 6.263995651 0.427883136 STPENHPET(ph)PK ddPTM_HeLa_A485_30min_R1 2 STPENHPETPK 11 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 STPENHPET(1)PK;STPENHPET(1)PK ; 148.57 9.44E-07 1724440000 3498800 3423400 2248180 5170800 4381800 3277700 5877100 4967800 2702800 6998700 TRUE FALSE FALSE 4277095.989 3823736.85 3079875.337 5453267.711 3945532.607 3449315.304 4621409.574 3749439.261 3245227.168 5254052.892 0.814056516 0.727769006 0.586190394 1.037916409 0.750950302 0.65650563 0.879589465 0.713628001 0.617661686 1 22.32499929 -11.12732408 2.490594049 1.506333591 0.756039748 0.255749539 0.125941716 12862888.17 4530426.568 36710445.17 0.031817957 7.46E-12 11.12732408 -0.750293842 STPENHPET(ph)PK ddPTM_HeLa_A486_30min_R1 4 STPENHPETPK 11 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 STPENHPET(1)PK;STPENHPET(1)PK;STPENHPET(1)PK;STPENHPET(1)PK ;;; 130.72 5.26E-05 4286400000 6632200 5847800 2898550 2126430 4883230 6441400 8757500 7899100 4621460 9564100 TRUE FALSE FALSE 6167317.029 5384399.031 4020946.186 4950436.504 4270729.759 5646725.559 6566280.873 6100647.366 5022051.874 7169187.108 0.860253322 0.751047357 0.560865008 0.690515735 0.595706277 0.78763819 0.915903125 0.850953849 0.700505064 1 22.77337811 -6.500885942 8.007127149 0.854235928 0.687843016 0.387657724 0.103459586 0.243314383 74.75012508 0.038117643 0.032344444 3.16E-07 6.500885942 -0.166392912 STPESGDS(ph)DKESVGSSSTSNEGGR ddPTM_HeLa_A485_30min_R1 2 STPESGDSDKESVGSSSTSNEGGR 24 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 STPES(0.319)GDS(0.68)DKES(0.001)VGSSSTSNEGGR;STPES(0.097)GDS(0.903)DKESVGSSSTSNEGGR ; 147.55 1.41E-09 268470000 210792 179075 135766 303266 264740 214331 316426 328114 184963 441180 TRUE FALSE FALSE 257681.9532 200016.2635 185991.4931 319832.6537 238381.556 225553.0397 248819.0001 247643.527 222083.3775 331201.9453 0.778020651 0.603910292 0.561565219 0.96567263 0.719746848 0.681013632 0.751260684 0.747711572 0.67053766 1 18.33735162 -11.10005728 2.375374046 1.484606391 0.719682306 0.395238931 0.10392886 7217378.401 2035253.28 18907436.21 0.026228002 7.94E-12 11.10005728 -0.764924085 STPFIVPS(ph)SPTEQEGR ddPTM_HeLa_A485_30min_R1 4 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.647)S(0.352)PT(0.001)EQEGR;STPFIVPS(0.625)S(0.375)PTEQEGR;STPFIVPS(0.487)S(0.487)PT(0.026)EQEGR;STPFIVPS(0.658)S(0.341)PTEQEGR ;;; 224.67 6.32E-34 4216420000 2136780 2867240 2647800 2171270 3561200 2672130 3375900 3449570 2483240 2653120 TRUE FALSE FALSE 2612099.339 3202538.776 3627331.404 2289880.982 3206634.424 2812038.595 2654611.386 2603557.549 2981603.49 1991746.011 1.311462066 1.607905204 1.821181709 1.149685236 1.609961514 1.411845978 1.332806177 1.307173472 1.496979772 1 20.92560225 -12.45606542 0.168104481 1.27E-13 1.583408866 0.370232458 0.180552021 76.82974537 1.159628584 27.36677985 0.713152816 3.50E-13 12.45606542 1.583408866 STPFIVPS(ph)SPTEQEGR ddPTM_HeLa_A486_30min_R1 3 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.555)S(0.436)PT(0.009)EQEGR;STPFIVPS(0.683)S(0.317)PT(0.001)EQEGR;S(0.001)T(0.001)PFIVPS(0.484)S(0.484)PT(0.03)EQEGR ;; 167.32 5.01E-12 9170270000 5500330 5744010 4590600 1676490 6445300 5395620 5528890 6371040 4908260 5533530 TRUE FALSE FALSE 5114785.271 5288833.728 6368203.261 3902953.445 5636870.374 4729963.263 4145503.243 4920493.271 5333711.929 4147898.071 1.233102932 1.275063571 1.535284414 0.940947289 1.358970321 1.140327747 0.999422641 1.186261858 1.285883076 1 21.98394901 -5.260241017 24.99998968 1.142517561 1.34054162 0.324384068 0.143002469 138.8442056 2896519.832 0.038929371 0.062855526 5.49E-06 5.260241017 0.198024059 STPFIVPS(ph)SPTEQEGRQDKPMDTSVLSEEGGEPFQK ddPTM_HeLa_A485_30min_R1 1 STPFIVPSSPTEQEGRQDKPMDTSVLSEEGGEPFQK 36 2 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.498)S(0.498)PT(0.004)EQEGRQDKPMDTSVLSEEGGEPFQK 379.15 3.56E-172 774880000 202710 401200 188070 148150 445460 614790 911910 1673100 253620 246050 TRUE FALSE FALSE 247802.1402 448116.85 257644.9192 156243.0594 401108.4383 646979.4538 717072.9789 1262769.602 304519.2077 184714.2632 1.341543072 2.426000257 1.394829586 0.845863533 2.171507664 3.502596077 3.882066097 6.836340517 1.648596066 1 17.49493575 -6.210655187 2.997240868 3.808006552 1.556656949 0.231753067 1.520836521 0.32054093 5.741952122 0.533126545 0.513185395 6.16E-07 6.210655187 -2.251349604 STPFIVPS(ph)SPTEQEGRQDKPMDTSVLSEEGGEPFQK ddPTM_HeLa_A486_30min_R1 1 STPFIVPSSPTEQEGRQDKPMDTSVLSEEGGEPFQK 36 2 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.493)S(0.493)PT(0.014)EQEGRQDKPMDTSVLSEEGGEPFQK 236.29 1.56E-51 230190000 141160 73418 49720 74776 156500 86997 157590 180940 63672 183770 TRUE FALSE FALSE 131265.413 67600.0903 68972.91555 174082.307 136870.3107 76264.19466 118159.3152 139743.9119 69191.14023 137752.7959 0.952905617 0.490734797 0.500700658 1.263729755 0.993593704 0.55363083 0.857763463 1.014454269 0.502284834 1 17.07172207 -11.23119593 0.023941562 1.867026978 1.19E-05 0.025519341 0.260823397 6030.162916 18.83953586 901.324838 593.1832651 5.87E-12 11.23119593 -1.867015035 STPFIVPSS(ph)PTEQEGR ddPTM_HeLa_A485_30min_R1 5 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.005)S(0.995)PTEQEGR;STPFIVPS(0.016)S(0.983)PT(0.001)EQEGR;STPFIVPS(0.006)S(0.99)PT(0.004)EQEGR;STPFIVPS(0.029)S(0.97)PT(0.001)EQEGR;STPFIVPS(0.028)S(0.972)PTEQEGR ;;;; 343.72 1.16E-91 43002300000 16604000 21802300 22361700 18907800 26627200 19622300 25012400 23343200 19633300 23586500 TRUE FALSE FALSE 20297502.52 24351889.33 30634223.38 19940685.24 23976102.47 20649693.29 19668296.41 17618243.6 23573523.22 17706819.63 1.146309893 1.375283074 1.730080501 1.126158489 1.354060355 1.166200013 1.110775217 0.994997632 1.331324525 1 24.07780177 -6.130757055 1.345543023 1.106972239 1.386145949 0.29124477 0.176777862 0.541737646 2.001024601 0.07955335 0.080147306 7.40E-07 6.130757055 0.279173709 STPFIVPSS(ph)PTEQEGR ddPTM_HeLa_A486_30min_R1 5 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.007)S(0.973)PT(0.02)EQEGR;STPFIVPS(0.085)S(0.915)PTEQEGR;STPFIVPS(0.003)S(0.997)PTEQEGR;STPFIVPS(0.019)S(0.98)PTEQEGR;STPFIVPS(0.053)S(0.946)PT(0.001)EQEGR ;;;; 277.82 1.39E-58 36801100000 14289930 15197680 12572970 4710220 17611790 14299410 16660940 17339740 13432610 15838760 TRUE FALSE FALSE 13288279.7 13993360.49 17441560.7 10965630.2 15402755.07 12535294.18 12492196.59 13391859.73 14596959.45 11872631.4 1.119236271 1.178623341 1.469056025 0.923605714 1.297332879 1.055814314 1.052184319 1.12796054 1.229462868 1 23.50113639 -5.270773182 24.9984341 1.108015594 1.247937034 0.22887315 0.131440736 1059.561285 2837787.28 0.036012063 0.054240669 5.36E-06 5.270773182 0.13992144 STPFIVPSS(ph)PTEQEGRQDKPMDTSVLSEEGGEPFQK ddPTM_HeLa_A485_30min_R1 1 STPFIVPSSPTEQEGRQDKPMDTSVLSEEGGEPFQK 36 2 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.149)S(0.818)PT(0.033)EQEGRQDKPMDTSVLSEEGGEPFQK 229.52 2.89E-40 774800000 122800 235120 89233 74343 274140 374290 584460 1054200 140840 125540 TRUE FALSE FALSE 150116.4363 262615.2387 122244 78404.16984 246845.659 393887.2456 459585.3464 795655.7971 169105.2961 94245.18839 1.592828652 2.786510836 1.297084786 0.831916952 2.619185799 4.179388384 4.876486049 8.442402319 1.794312251 1 16.52413134 -6.19276812 2.848107399 4.623876489 1.689879216 0.234533903 1.950933503 0.326838118 5.214633807 0.687467611 0.668032699 6.42E-07 6.19276812 -2.933997273 STPFIVPSS(ph)PTEQEGRQDKPMDTSVLSEEGGEPFQKK ddPTM_HeLa_A485_30min_R1 2 STPFIVPSSPTEQEGRQDKPMDTSVLSEEGGEPFQKK 37 3 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.124)S(0.864)PT(0.012)EQEGRQDKPMDTSVLSEEGGEPFQKK;STPFIVPS(0.17)S(0.732)PT(0.097)EQEGRQDKPMDTSVLSEEGGEPFQKK ; 228.09 6.63E-40 573090000 154133 306820 103517 108687 300750 536170 876380 1665280 175262 219962 TRUE FALSE FALSE 188419.3541 342699.93 141812.246 114624.2956 270806.274 564243.0321 689134.2536 1256867.469 210435.4758 165129.5215 1.141039787 2.075340175 0.858794022 0.694147809 1.639962809 3.416972489 4.173295286 7.611403809 1.27436617 1 17.33323854 -6.296611423 2.926060444 4.038636386 1.223392024 0.267455063 1.756481593 0.300411723 5.158823031 0.638350673 0.578796657 5.05E-07 6.296611423 -2.815244362 STPLASPSPSPGRS(ph)PQR ddPTM_HeLa_A485_30min_R1 2 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 STPLASPSPS(0.004)PGRS(0.996)PQR;STPLASPSPS(0.001)PGRS(0.999)PQR ; 168.05 2.44E-12 2203400000 598310 936040 855490 656500 1328610 802300 995990 1471690 903400 1297540 TRUE FALSE FALSE 731401.9954 1045501.736 1171971.351 692362.9327 1196328.923 844307.1874 783188.6 1110755.72 1084704.094 974087.1575 0.750858883 1.073314362 1.203148345 0.710781296 1.228153882 0.8667676 0.804023125 1.140304244 1.113559588 1 19.89369134 -7.303573118 24.99660544 1.095198968 0.961280946 0.113170447 0.171580094 1161.951791 689343.4775 0.091611126 0.0440091 4.97E-08 7.303573118 -0.133918021 STPLASPSPSPGRS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 STPLASPSPS(0.004)PGRS(0.996)PQR 123.83 1.00E-05 637370000 164450 184110 117570 58529 212250 150530 187220 216210 126160 172330 TRUE FALSE FALSE 152922.9042 169520.4531 163096.2526 136258.4699 185627.6258 131959.1391 140375.5758 166983.7028 137095.6504 129177.4463 1.183820462 1.312306892 1.262575297 1.054816253 1.436997178 1.021533889 1.086687961 1.292669174 1.061297109 1 16.97899468 -6.298443642 24.98958393 1.110370114 1.243402794 0.304156473 0.117466817 860.5108214 581114.4913 0.040533946 0.035748764 5.03E-07 6.298443642 0.13303268 STPLS(ph)QPSANGVQTEGLDYDR ddPTM_HeLa_A485_30min_R1 1 STPLSQPSANGVQTEGLDYDR 21 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(0.119)T(0.119)PLS(0.762)QPSANGVQTEGLDYDR 148.69 1.53E-09 148830000 54480 48230 44745 61939 69187 65684 90543 76669 53639 90659 TRUE FALSE FALSE 66598.88805 53870.07895 61298.03749 65322.57073 62298.49935 69123.11267 71197.74838 57865.80754 64403.85529 68059.37976 0.978540919 0.791515867 0.900655247 0.959787923 0.915355085 1.015629483 1.046112213 0.850225314 0.946289189 1 16.05450638 -5.181349079 4.155227683 0.959652939 0.877176099 0.194245317 0.066423338 0.352260485 11.37156285 0.018529164 0.033254588 6.59E-06 5.181349079 -0.082476841 STPQPPS(ph)GK ddPTM_HeLa_A485_30min_R1 1 STPQPPSGK 9 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 STPQPPS(1)GK 64.121 0.023367 409660000 385990 349020 281900 629370 472950 397150 588520 561180 381110 769970 TRUE FALSE FALSE 471852.1439 389834.8529 386186.5408 663750.8895 425861.4374 417944.1599 462777.8942 423549.7251 457595.2813 578030.6492 0.816309904 0.674419001 0.668107377 1.14829705 0.736745427 0.723048441 0.800611343 0.732746137 0.79164536 1 19.14078647 -11.50056736 1.810309094 2.715816728 0.78705184 0.194059022 0.12960298 6576605.799 420286.7851 46206760.38 0.033199091 3.16E-12 11.50056736 -1.928764887 STPS(ph)PTPVESSDPK ddPTM_HeLa_A485_30min_R1 2 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 1 0 S(0.002)T(0.002)PS(0.995)PTPVESSDPK;STPS(1)PTPVESSDPK ; 220.46 5.99E-24 0 156232 149591 98094 189411 166111 163032 220394 217190 119325 259650 TRUE FALSE FALSE 190985.2694 167084.3662 134383.0526 199758.0433 149572.4056 171568.1034 173305.0214 163923.812 143272.433 194924.0335 0.979793338 0.857176835 0.689412435 1.024799455 0.76733691 0.880179321 0.889090064 0.840962548 0.735016767 1 17.57255246 -4.268728794 6.180463744 0.84799942 0.98258768 0.121446305 0.100792148 0.233273148 46.69482064 0.023551283 0.1313764 5.39E-05 4.268728794 0.13458826 STPS(ph)PVLQPR ddPTM_HeLa_A486_30min_R1 2 STPSPVLQPR 10 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 S(0.034)T(0.015)PS(0.951)PVLQPR;S(0.199)T(0.023)PS(0.778)PVLQPR ; 110.66 0.00071742 303440000 656800 664770 561960 222537 806240 685710 818700 769990 610110 712210 TRUE FALSE FALSE 610761.7117 612091.2041 779565.9618 518077.3824 705113.8613 601114.072 613852.6007 594680.0858 662994.826 533867.9803 1.14403136 1.146521662 1.460222359 0.97042228 1.320764472 1.125960152 1.149820973 1.113908509 1.24187037 1 19.0261235 -14 0.206824585 0.127085035 1.212909984 0.163786352 0.125217177 256.5275966 2.552210624 92.73267788 0.264499508 1.00E-14 14 1.085824948 STPSHGSVSSLNSTGSLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 STPSHGSVSSLNSTGSLSPK 20 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 STPSHGSVSSLNST(0.001)GSLS(0.998)PK;STPSHGSVSSLNSTGS(0.009)LS(0.991)PK ; 329.19 5.58E-114 933811000 178387 344119 300599 104114 506792 246267 399823 404855 266280 205970 TRUE FALSE FALSE 218068.5727 384360.7236 411803.0791 109801.4842 456334.009 259161.1593 314397.5498 305563.6765 319719.9535 154625.4696 1.410301765 2.485752992 2.663229286 0.710112535 2.951221492 1.676057379 2.033284365 1.976153587 2.067705627 1 17.23841845 -10.23453668 3.691999471 0.998555243 2.012272608 0.194144787 0.608720183 111425637.7 168336252.5 1877408.626 0.140332746 5.83E-11 10.23453668 1.013717365 STPSHGSVSSLNSTGSLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 STPSHGSVSSLNSTGSLSPK 20 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 STPSHGSVSSLNS(0.002)T(0.12)GS(0.088)LS(0.79)PK;STPSHGSVSSLNST(0.001)GS(0.001)LS(0.997)PK ; 180.7 5.06E-19 860401000 155107 199755 123446 32882 213457 134970 176887 146829 158807 111385 TRUE FALSE FALSE 144234.8003 183925.6863 171247.5972 76550.95776 186683.2327 118318.7737 132628.0017 113399.242 172572.5186 83493.47101 1.727497953 2.202875076 2.051029801 0.916849627 2.235902166 1.417102107 1.588483508 1.358180952 2.066898364 1 16.34937577 -10.92987134 0.10534425 3.58E-15 2.244822955 0.221801345 0.403518556 112.411929 1.715465181 37.89797714 7.394250684 1.18E-11 10.92987134 2.244822955 STQIENQHQGAQDTSDLMS(ph)PSKR ddPTM_HeLa_A486_30min_R1 2 STQIENQHQGAQDTSDLMSPSKR 23 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 0 STQIENQHQGAQDTSDLMS(0.995)PS(0.004)KR;STQIENQHQGAQDT(0.002)S(0.004)DLMS(0.986)PS(0.008)KR ; 140.9 1.01E-07 847510000 433977 417394 220078 214564 474794 505760 664800 583589 348379 730150 TRUE FALSE FALSE 403557.4534 384318.1793 305298.0955 499515.8355 415240.9092 443364.4734 498460.0085 450718.5244 378576.7722 547315.6875 0.73733946 0.702187399 0.557809875 0.912664933 0.758686291 0.81007083 0.910735833 0.82350741 0.69169728 1 19.06201368 -5.268557491 24.99402567 0.83437867 0.669419759 0.438878985 0.091831116 527.3443895 1851678.444 0.025147641 0.038188329 5.39E-06 5.268557491 -0.164958911 STQKS(ph)PATAPK ddPTM_HeLa_A486_30min_R1 1 STQKSPATAPK 11 1 Q07960;H0YE29 Q07960 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.011)T(0.028)QKS(0.96)PAT(0.001)APK 75.968 0.0047359 1292900000 989280 681250 429560 633060 823580 1400100 1574400 1239700 940060 1877800 TRUE FALSE FALSE 919936.5806 627265.2689 595897.136 1473795.673 720278.9168 1227369.897 1180468.468 957447.3725 1021545.158 1407586.658 0.653555911 0.445631724 0.423346678 1.047037257 0.511711952 0.871967556 0.8386471 0.680204922 0.725742285 1 20.42479231 -5.23581029 24.99739531 0.78868606 0.501323437 0.435614345 0.15672661 727.1514831 709228.1597 0.040430153 0.069996027 5.81E-06 5.23581029 -0.287362623 STRLMCRMTHHK ddPTM_HeLa_A485_30min_R1 1 STRLMCRMTHHK 12 2 Q63HK3 Q63HK3 ZKSCAN2 Zinc finger protein with KRAB and SCAN domains 2 0 0 43.897 0.031376 187440000 28036 68714 85631 21309 77848 58714 64717 97248 58759 39219 FALSE FALSE TRUE 34272.51148 76749.50457 117309.4703 22473.05671 70097.17978 61788.17425 50889.68426 73397.77552 70551.39233 29442.42507 1.164051921 2.606765726 3.984368476 0.763288237 2.380822219 2.098610223 1.728447441 2.492925611 2.396249363 1 14.84560889 -5.274225683 24.9917257 1.928409898 2.587232574 0.137393952 0.83716485 1684.779896 3293016.704 0.234868207 0.350933098 5.32E-06 5.274225683 0.658822675 STRLS(ph)GAAPAHSAADPWEKEHHR ddPTM_HeLa_A485_30min_R1 1 STRLSGAAPAHSAADPWEKEHHR 23 2 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 S(0.302)T(0.302)RLS(0.395)GAAPAHS(0.001)AADPWEKEHHR 56.29 0.015898 122770000 43152 83100 66917 39402 106000 86984 93550 121450 62646 65857 TRUE FALSE FALSE 52751.01353 92817.82213 91672.38295 41554.43149 95446.26781 91538.34774 73562.27827 91664.19707 75218.47758 49440.06191 1.066969002 1.877380783 1.854212544 0.840501203 1.930545071 1.851501479 1.487908296 1.854046972 1.521407431 1 15.59339293 -8.034720721 22.22830049 0.999999988 1.609584366 0.200071353 0.35406001 1902.862331 1218218.099 0.332713471 0.085906249 9.23E-09 8.034720721 0.609584378 STRPAPQES(ph)LNGSLSDGPSPINVENVALLLAK ddPTM_HeLa_A485_30min_R1 2 STRPAPQESLNGSLSDGPSPINVENVALLLAK 32 1 Q9UPZ3-2;Q9UPZ3;F5H6Q8 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 STRPAPQES(0.569)LNGS(0.421)LS(0.009)DGPSPINVENVALLLAK;S(0.083)T(0.083)RPAPQES(0.275)LNGS(0.275)LS(0.275)DGPS(0.007)PINVENVALLLAK ; 179.45 4.40E-21 38240000 9425.3 9192.2 8628.4 10740.5 14808.5 11183.5 13473 15947.5 11075.1 12875.9 TRUE FALSE FALSE 11521.92547 10267.14783 11820.40422 11327.22632 13334.11374 11769.05077 10594.38349 12036.35062 13297.77098 9666.175093 1.19198394 1.062172755 1.222862622 1.171841624 1.379461226 1.217549926 1.096026441 1.245203041 1.375701439 1 13.23872941 -4.791640346 23.69189302 1.222715122 1.127078403 0.082832886 0.111880382 224.4998006 176114.0755 0.028623135 0.059601293 1.62E-05 4.791640346 -0.09563672 STS(ph)EGAWPQLPSGLSMMR ddPTM_HeLa_A485_30min_R1 2 STSEGAWPQLPSGLSMMR 18 0 G3V1A6;P57764 G3V1A6 GSDMD Gasdermin-D 1 0 S(0.003)T(0.018)S(0.979)EGAWPQLPSGLSMMR;S(0.112)T(0.112)S(0.776)EGAWPQLPSGLSMMR ; 230.93 4.95E-35 229620000 180118 263900 241360 175770 287650 239920 300260 321800 233510 261290 TRUE FALSE FALSE 220184.6277 294760.8094 330649.1078 185371.87 259010.556 252481.8402 236106.9981 242878.0454 280373.3151 196155.2117 1.122502052 1.502691704 1.685650384 0.945026484 1.320436779 1.287153362 1.203674356 1.238193181 1.429344205 1 17.58163614 -13.45788933 0.193846541 1.92E-11 1.358151328 0.164670607 0.196171017 205.5896228 2.444103945 80.98849143 0.526345239 3.48E-14 13.45788933 1.358151328 STS(ph)FRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_HeLa_A485_30min_R1 9 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.032)T(0.053)S(0.915)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.145)T(0.145)S(0.7)FRGGMGS(0.011)GGLATGIAGGLAGMGGIQNEK;S(0.131)T(0.131)S(0.734)FRGGMGS(0.001)GGLAT(0.002)GIAGGLAGMGGIQNEK;S(0.132)T(0.132)S(0.729)FRGGMGS(0.007)GGLAT(0.001)GIAGGLAGMGGIQNEK;S(0.031)T(0.146)S(0.823)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.186)T(0.186)S(0.542)FRGGMGS(0.051)GGLAT(0.036)GIAGGLAGMGGIQNEK;S(0.002)T(0.045)S(0.952)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.126)T(0.126)S(0.608)FRGGMGS(0.14)GGLATGIAGGLAGMGGIQNEK;S(0.113)T(0.113)S(0.601)FRGGMGS(0.147)GGLAT(0.026)GIAGGLAGMGGIQNEK ;;;;;;;; 248.48 3.56E-51 18992226000 4118634 5305424 4237464 4677859 7308621 5623574 6637593 8183883 5508662 7236215 TRUE FALSE FALSE 5034809.924 5925847.186 5805078.269 4933398.592 6580949.031 5918015.639 5219417.031 6176772.862 6614199.935 5432359.773 0.926818203 1.090842182 1.06861079 0.908150196 1.211434681 1.089400534 0.960801061 1.137033098 1.217555576 1 22.3731476 -2.385873177 0.547611179 1.090668085 2.91E-19 0.151932873 0.096499723 58.51310592 2.532814253 0.04929706 63.03561888 0.004112698 2.385873177 -1.090668085 STS(ph)FRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_HeLa_A486_30min_R1 5 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.179)T(0.179)S(0.642)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.152)T(0.152)S(0.696)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.001)T(0.012)S(0.987)FRGGMGSGGLATGIAGGLAGMGGIQNEK;S(0.002)T(0.01)S(0.987)FRGGMGS(0.001)GGLATGIAGGLAGMGGIQNEK;S(0.007)T(0.032)S(0.962)FRGGMGSGGLATGIAGGLAGMGGIQNEK ;;;; 315.02 1.65E-109 18312830000 5447700 5292600 3259920 2459160 6153720 5947560 6831710 7474890 4747120 7493410 TRUE FALSE FALSE 5065844.362 4873195.101 4522248.328 5725048.759 5381863.056 5213810.518 5122343.9 5773020.723 5158604.184 5617011.362 0.901875399 0.867577932 0.805098661 1.019233964 0.958136402 0.928217905 0.911934046 1.027774443 0.918389487 1 22.42137129 -5.260773114 24.99997897 0.963213397 0.859123391 0.55803953 0.044007719 46.01078263 1726414.132 0.012116423 0.019475677 5.49E-06 5.260773114 -0.104090006 STS(ph)FRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_HeLa_A485_30min_R1 2 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.159)T(0.159)S(0.683)FRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR;S(0.027)T(0.027)S(0.947)FRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ; 245.24 1.75E-52 6554200000 240686 463780 374550 316280 861690 644800 838240 1526250 443430 530770 TRUE FALSE FALSE 294225.7703 518015.0367 513111.6313 333557.5755 775897.118 678560.7309 659143.1762 1151934.794 532422.3336 398458.8071 0.738409505 1.300046648 1.28774072 0.837119345 1.947245497 1.702963315 1.654231666 2.890975865 1.336204205 1 18.60407106 -5.767623703 24.99777767 1.842151711 1.076981119 0.328825597 0.489623256 159.201255 643509.5799 0.145922997 0.169597543 1.71E-06 5.767623703 -0.765170592 STS(ph)FRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_HeLa_A486_30min_R1 2 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.188)T(0.188)S(0.582)FRGGMGS(0.033)GGLAT(0.01)GIAGGLAGMGGIQNEKETMQSLNDR;S(0.135)T(0.135)S(0.73)FRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ; 288.1 1.47E-80 1793210000 529865 459935 411662 314835 984441 515554 824826 1013706 402250 659717 TRUE FALSE FALSE 492724.1997 423488.0755 571068.5511 732951.7909 860963.2302 451950.1892 618445.8107 782907.2728 437117.3539 494519.5692 0.996369467 0.856362623 1.154794647 1.482149214 1.741009424 0.913917704 1.250599267 1.583167425 0.883923268 1 18.91566809 -4.942663784 4.858269987 1.295900264 0.932971122 0.190099833 0.27045149 0.290061518 14.14116125 0.071482844 0.153558345 1.14E-05 4.942663784 -0.362929142 STS(ph)FRQGPEESGLGDGTGPK ddPTM_HeLa_A486_30min_R1 1 STSFRQGPEESGLGDGTGPK 20 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(0.16)T(0.16)S(0.678)FRQGPEES(0.001)GLGDGTGPK 60.991 0.0085039 852160000 179720 145660 100550 113420 299610 317670 411650 402960 158810 233190 TRUE FALSE FALSE 167122.5561 134117.3711 139485.6528 264047.4919 262030.12 278479.1052 308650.816 311214.8046 172575.7787 174797.7062 0.956091242 0.767271917 0.797983314 1.510588998 1.499047818 1.593150799 1.765760105 1.780428424 0.987288577 1 17.41532673 -5.262833922 24.70766444 1.501965908 0.8331311 0.521289435 0.263264288 73.74063941 1306503.63 0.071662199 0.113192177 5.46E-06 5.262833922 -0.668834808 STS(ph)GPRPGCQPSSPCVPK ddPTM_HeLa_A485_30min_R1 2 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 S(0.019)T(0.06)S(0.922)GPRPGCQPSSPCVPK;S(0.039)T(0.039)S(0.921)GPRPGCQPS(0.001)SPCVPK ; 72.167 0.0028891 313700000 188503 216980 170877 257800 315030 275010 364210 392200 251350 364640 TRUE FALSE FALSE 230434.842 242353.9235 234091.5131 271882.9612 283664.5071 289409.0984 286393.5582 296012.3351 301793.6395 273741.9587 0.84179584 0.885337143 0.855153935 0.993208942 1.036247817 1.057233242 1.046217246 1.081355363 1.102474903 1 18.06245706 -5.435969905 1.985571886 1.060027508 0.857484327 0.903324197 0.028160543 0.090781497 0.707190456 0.008807026 0.014873421 3.66E-06 5.435969905 -0.202543181 STS(ph)GSPRPAGAKPK ddPTM_HeLa_A486_30min_R1 2 STSGSPRPAGAKPK 14 2 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 S(0.052)T(0.052)S(0.491)GS(0.405)PRPAGAKPK;S(0.062)T(0.072)S(0.506)GS(0.36)PRPAGAKPK ; 59.728 0.013571 1514190000 1868120 1483572 782674 834318 1577783 2059320 2142364 2136830 1458487 2561830 TRUE FALSE FALSE 1737174.435 1366008.352 1085746.334 1942334.468 1379882.744 1805262.036 1606321.868 1650320.456 1584909.827 1920331.093 0.904622354 0.711340017 0.565395383 1.011458115 0.718565017 0.940078532 0.836481726 0.859393706 0.825331545 1 20.87292364 -5.266383988 24.99942633 0.872018532 0.725541331 0.288522837 0.112037121 539.4608092 2727459.844 0.030250813 0.04648764 5.42E-06 5.266383988 -0.146477202 STS(ph)HDRVPQSVQIR ddPTM_HeLa_A485_30min_R1 2 STSHDRVPQSVQIR 14 1 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.149)T(0.149)S(0.703)HDRVPQSVQIR;S(0.011)T(0.203)S(0.786)HDRVPQSVQIR ; 117.65 3.94E-05 1343000000 189751 240806 242433 178663 301690 218763 265210 288670 210866 219569 TRUE FALSE FALSE 231960.4553 268966.167 332119.0552 188422.9073 271652.6843 230217.0924 208545.7169 217873.2299 253184.872 164834.4892 1.407232531 1.631734768 2.01486386 1.143103657 1.64803304 1.396656086 1.265182535 1.321769679 1.53599452 1 17.33065861 -11.56044957 0.098814358 7.15E-10 1.913744086 0.336957057 0.222825324 111.0011037 1.319994029 29.3696744 4.761486219 2.75E-12 11.56044957 1.913744085 STS(ph)HDRVPQSVQIR ddPTM_HeLa_A486_30min_R1 1 STSHDRVPQSVQIR 14 1 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.061)T(0.244)S(0.694)HDRVPQSVQIR 148.36 3.32E-08 681890000 129890 156040 128590 25236 168310 120840 141380 151540 139530 121650 TRUE FALSE FALSE 120785.3818 143674.8221 178383.4918 58750.68336 147198.9904 105931.9894 106005.2286 117037.6501 151624.5727 91188.04819 1.324574702 1.575588303 1.956215703 0.644280523 1.614235564 1.161687211 1.162490378 1.283475767 1.662768046 1 16.47655713 -5.232152901 24.9992344 1.242028998 1.614472323 0.259704996 0.307941705 1037.465719 885590.0948 0.080642756 0.13964877 5.86E-06 5.232152901 0.372443325 STS(ph)LNERPK ddPTM_HeLa_A485_30min_R1 4 STSLNERPK 9 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 S(0.086)T(0.121)S(0.793)LNERPK;S(0.031)T(0.031)S(0.937)LNERPK;S(0.005)T(0.085)S(0.909)LNERPK;S(0.105)T(0.281)S(0.614)LNERPK ;;; 95.162 0.00071797 2941740000 2309020 2101780 1800770 3009640 2881780 2759920 3906200 4097140 2346510 4538260 TRUE FALSE FALSE 2822653.533 2347564.888 2466949.759 3174049.012 2594859.865 2904425.144 3071608.459 3092309.991 2817433.034 3406955.302 0.828497377 0.689050686 0.7240922 0.931637997 0.761636016 0.852498752 0.901569932 0.907646187 0.826965071 1 21.70005159 -3.041525248 0.067763607 1.223081203 0.195190575 0.486331439 0.066126979 146.5124211 1.123332241 4.202742307 16.11646386 0.000908813 3.041525248 -1.027890628 STS(ph)LNERPK ddPTM_HeLa_A486_30min_R1 3 STSLNERPK 9 1 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 S(0.002)T(0.009)S(0.989)LNERPK;S(0.002)T(0.093)S(0.905)LNERPK;S(0.002)T(0.061)S(0.937)LNERPK ;; 117.86 0.00027414 2207900000 1444890 1374300 771520 589100 1225360 1405740 1750130 1699200 1162230 1992190 TRUE FALSE FALSE 1343610.672 1265395.463 1070273.206 1371454.571 1071663.923 1232314.091 1312228.963 1312329.253 1262973.032 1493332.657 0.899739697 0.847363417 0.716701132 0.918385174 0.717632416 0.825210703 0.87872515 0.878792309 0.845741253 1 20.51010415 -8.643954835 0.567863738 1.006846931 0.820620081 0.377533035 0.064653818 2.38922962 1.225847376 0.105627528 0.028723443 2.27E-09 8.643954835 -0.18622685 STS(ph)LNERPKR ddPTM_HeLa_A485_30min_R1 2 STSLNERPKR 10 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1 P49815-5 TSC2 Tuberin 1 0 S(0.001)T(0.003)S(0.996)LNERPKR;ST(0.003)S(0.997)LNERPKR ; 81.377 0.0047917 350260000 323080 370660 278511 329260 440850 463740 671630 811800 355800 524410 TRUE FALSE FALSE 394948.0314 414005.4627 381543.8087 347246.6401 396957.4261 488020.7093 528130.7638 612704.7771 427205.7964 393684.2381 1.00321017 1.05161808 0.969162013 0.882043543 1.008314247 1.23962471 1.341508531 1.556335555 1.085148337 1 18.58667943 -6.285627494 3.679002116 1.291274392 0.977211554 0.430676505 0.146920856 0.195117564 5.764789782 0.052000069 0.04755606 5.18E-07 6.285627494 -0.314062838 STS(ph)LNERPKR ddPTM_HeLa_A486_30min_R1 1 STSLNERPKR 10 2 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1 P49815-5 TSC2 Tuberin 1 0 S(0.009)T(0.019)S(0.972)LNERPKR 52.821 0.031094 199830000 233370 195880 142420 88117 228520 197870 251180 267590 163760 285350 TRUE FALSE FALSE 217011.9681 180357.7554 197568.8381 205140.8292 199856.8907 173458.8112 188332.1073 206665.5984 177954.8487 213896.5027 1.014565294 0.843201049 0.923665584 0.959065841 0.934362592 0.810947393 0.880482406 0.966194378 0.83196708 1 17.70655337 -4.238490552 23.31253056 0.90388679 1.014565602 0.23101872 0.059603181 3659.307379 3717158.16 0.014465633 0.684702305 5.77E-05 4.238490552 0.110678812 STS(ph)LSALVR ddPTM_HeLa_A485_30min_R1 4 STSLSALVR 9 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.05)T(0.05)S(0.9)LSALVR;S(0.002)T(0.002)S(0.996)LSALVR;S(0.019)T(0.003)S(0.978)LSALVR;S(0.203)T(0.203)S(0.594)LSALVR ;;; 229.04 1.76E-12 1362140000 1384410 1677420 1689480 1443770 2108210 1653510 2217540 2342150 1581370 1956980 TRUE FALSE FALSE 1692367.228 1873579.677 2314488.957 1522639.499 1898309.21 1740085.227 1743744.463 1767734.04 1898736.454 1469140.902 1.151943443 1.275289304 1.575402982 1.036414886 1.292121952 1.184423649 1.186914381 1.203243364 1.292412764 1 20.48654134 -13.96769934 0.185141978 2.56E-13 1.292448866 0.230650648 0.132788054 200.1393851 1.964365458 73.89449578 0.385949179 1.08E-14 13.96769934 1.292448866 STS(ph)LSALVR ddPTM_HeLa_A486_30min_R1 4 STSLSALVR 9 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 S(0.001)T(0.001)S(0.998)LSALVR;S(0.206)T(0.206)S(0.588)LSALVR;S(0.001)T(0.001)S(0.999)LSALVR;S(0.027)T(0.005)S(0.967)LS(0.001)ALVR ;;; 227.27 2.40E-12 1273780000 1817330 1696240 1339240 536496 1854140 1560640 1861030 1954480 1492730 1817420 TRUE FALSE FALSE 1689944.552 1561823.765 1857829.594 1248989.801 1621576.472 1368104.104 1395380.61 1509487.57 1622121.038 1362326.203 1.24048451 1.146438909 1.363718609 0.916806708 1.190299701 1.004241203 1.024263211 1.108022122 1.190699434 1 20.37764076 -5.255889155 24.98741402 1.067909308 1.23983649 0.452899169 0.094413175 439.2437417 1977492.859 0.024922886 0.041653882 5.55E-06 5.255889155 0.171927182 STS(ph)LSSPR ddPTM_HeLa_A485_30min_R1 1 STSLSSPR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 S(0.064)T(0.04)S(0.877)LS(0.02)SPR 85.764 0.0045486 0 237540 317490 332220 261540 422490 313460 388800 400090 311260 353240 TRUE FALSE FALSE 290379.9535 354617.6937 455122.0028 275827.2679 380425.4121 329872.2809 305729.7038 301967.3002 373727.027 265183.7689 1.095014053 1.337252635 1.716251355 1.040136314 1.434572763 1.243938429 1.152897498 1.138709588 1.409313355 1 18.01663295 -6.508060319 13.53459993 1.188440034 1.332097026 0.111867822 0.196871244 4.271746534 3901.919636 0.070403627 0.059339716 3.10E-07 6.508060319 0.143656992 STS(ph)LSSPR ddPTM_HeLa_A486_30min_R1 1 STSLSSPR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 S(0.049)T(0.064)S(0.873)LS(0.014)SPR 83.358 0.0066104 170830000 337790 356220 338320 121530 440790 384770 425700 412100 355340 404700 TRUE FALSE FALSE 314112.6653 327991.8299 469326.5645 282927.9818 385502.008 337300.9895 319185.3574 318273.8261 386141.1573 303360.4858 1.035443573 1.081194965 1.547091946 0.932646126 1.270771989 1.111881755 1.052165237 1.049160457 1.272878886 1 18.21067365 -6.497672097 23.75400993 1.095415778 1.17725164 0.050008136 0.167123807 1398.934094 1318317.742 0.058078867 0.050963601 3.18E-07 6.497672097 0.081835862 STS(ph)PAGQHHS(ph)PISSR ddPTM_HeLa_A485_30min_R1 3 STSPAGQHHSPISSR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.257)T(0.327)S(0.416)PAGQHHS(0.895)PIS(0.101)S(0.004)R;S(0.185)T(0.25)S(0.565)PAGQHHS(0.775)PIS(0.224)S(0.001)R;S(0.256)T(0.326)S(0.417)PAGQHHS(0.919)PIS(0.072)S(0.009)R ;; 173.03 2.13E-12 2270460000 1186080 1894650 1755010 1053090 2128900 1590550 1860410 2152330 1584510 1643510 TRUE FALSE FALSE 1449919.404 2116212.836 2404261.231 1110617.64 1916939.241 1673828.739 1462918.205 1624467.693 1902506.623 1233813.204 1.175153094 1.715180896 1.948642812 0.900150555 1.553670552 1.356630593 1.185688564 1.31662369 1.541972981 1 20.23469256 -5.254545927 24.99894879 1.290701008 1.623211094 0.262564376 0.26466847 779.9554697 2828484.606 0.070819179 0.119222226 5.56E-06 5.254545927 0.332510086 STS(ph)PAGQHHS(ph)PISSR ddPTM_HeLa_A486_30min_R1 4 STSPAGQHHSPISSR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.255)T(0.326)S(0.419)PAGQHHS(0.998)PIS(0.002)SR;S(0.229)T(0.345)S(0.425)PAGQHHS(1)PISSR;S(0.257)T(0.327)S(0.416)PAGQHHS(0.999)PIS(0.001)SR;S(0.227)T(0.306)S(0.467)PAGQHHS(0.937)PIS(0.062)SR ;;; 201.95 2.35E-25 2975100000 2796230 3006610 2522710 632578 3169490 2939210 2973470 2962730 2833850 2772750 TRUE FALSE FALSE 2600228.717 2768355.274 3499570.873 1472673.553 2771943.01 2576600.154 2229476.356 2288181.055 3079490.4 2078435.352 1.251051044 1.331941968 1.683752573 0.708549126 1.33366814 1.239682606 1.072670532 1.100915192 1.48163877 1 20.98706644 -5.235154877 24.97060439 1.148262773 1.413217779 0.263551952 0.219829776 1103.443717 1048284.041 0.058083396 0.100564829 5.82E-06 5.235154877 0.264955007 STS(ph)PFGIPEEASEMLEAKPK ddPTM_HeLa_A485_30min_R1 3 STSPFGIPEEASEMLEAKPK 20 1 Q96D09 Q96D09 GPRASP2 G-protein coupled receptor-associated sorting protein 2 1 0 S(0.317)T(0.317)S(0.366)PFGIPEEASEMLEAKPK;S(0.168)T(0.168)S(0.663)PFGIPEEASEMLEAKPK;S(0.003)T(0.051)S(0.946)PFGIPEEASEMLEAKPK ;; 96.504 0.00017204 606130000 120253 108015 71529 172776 125684 149578 217279 220357.9 100104.3 244180 TRUE FALSE FALSE 147002.865 120646.4146 97990.55367 182214.3154 113170.4597 157409.6728 170855.5666 166314.7795 120194.3148 183310.4198 0.801934037 0.658153611 0.53456074 0.994020501 0.617370577 0.858705539 0.932055945 0.90728492 0.655687303 1 17.48392927 -5.861474435 0.969427822 0.867062929 0.688016684 0.185254457 0.144036826 0.956294749 1.946085049 0.070144517 0.098202666 1.38E-06 5.861474435 -0.179046245 STS(ph)PFGIPEEASEMLEAKPK ddPTM_HeLa_A486_30min_R1 2 STSPFGIPEEASEMLEAKPK 20 1 Q96D09 Q96D09 GPRASP2 G-protein coupled receptor-associated sorting protein 2 1 0 S(0.15)T(0.15)S(0.699)PFGIPEEASEMLEAKPK;S(0.05)T(0.156)S(0.794)PFGIPEEASEMLEAKPK ; 92.833 0.00024294 626140000 295660 236999 131323 153328 239312 310118 404840 358369 215275 444888 TRUE FALSE FALSE 274935.7608 218218.3361 182174.7826 356955.3328 209295.2575 271858.7942 303544.75 276776.2018 233935.2103 333485.1491 0.824431797 0.654356983 0.546275548 1.070378497 0.627599934 0.8152051 0.910219693 0.829950607 0.701486141 1 18.34726299 -13.99999999 0.096281606 1.679033713 0.620093648 0.182000901 0.143560739 334.5878841 2.20560998 46.53740869 2.724253358 1.00E-14 13.99999999 -1.058940066 STS(ph)PIIGS(ph)PPVR ddPTM_HeLa_A485_30min_R1 3 STSPIIGSPPVR 12 0 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 2 0 S(0.003)T(0.004)S(0.993)PIIGS(1)PPVR;S(0.004)T(0.006)S(0.991)PIIGS(1)PPVR;S(0.076)T(0.096)S(0.828)PIIGS(1)PPVR ;; 124.42 9.30E-05 1317980000 759620 899590 949430 913390 1194430 785240 958650 890500 838150 1209470 TRUE FALSE FALSE 928594.8483 1004789.225 1300663.666 963286.1829 1075508.355 826353.9522 753826.596 672103.4788 1006359.017 907971.3876 1.022713778 1.106630934 1.432494111 1.060921298 1.184517893 0.910110124 0.830231664 0.740225395 1.108359835 1 19.79228731 -6.275000596 7.800196391 0.895623379 1.168036796 0.432419957 0.13832742 0.154989391 62.86576407 0.048228733 0.044024197 5.31E-07 6.275000596 0.272413417 STS(ph)PIIGS(ph)PPVR ddPTM_HeLa_A486_30min_R1 4 STSPIIGSPPVR 12 0 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 2 0 STS(1)PIIGS(1)PPVR;S(0.001)T(0.003)S(0.997)PIIGS(1)PPVR;S(0.015)T(0.079)S(0.906)PIIGS(1)PPVR;ST(0.001)S(0.999)PIIGS(1)PPVR ;;; 241.22 1.72E-27 1688380000 1434920 1861770 1451930 485281 1975690 1655570 1791960 1700200 1479220 1550110 TRUE FALSE FALSE 1334339.518 1714236.565 2014156.18 1129758.693 1727880.538 1451322.606 1343592.655 1313101.575 1607439.981 1161952.366 1.148359913 1.47530709 1.733424053 0.972293465 1.487049373 1.249037954 1.156323351 1.130082104 1.383395763 1 20.1481195 -7.87471934 0.222103264 0.92898388 1.461944301 0.181374509 0.207512607 4.936890766 0.972665656 1.011622489 0.708032944 1.33E-08 7.87471934 0.53296042 STS(ph)PIIGSPPVR ddPTM_HeLa_A485_30min_R1 1 STSPIIGSPPVR 12 0 Q86TB9;Q86TB9-4;Q86TB9-2 Q86TB9 PATL1 Protein PAT1 homolog 1 1 0 S(0.009)T(0.104)S(0.887)PIIGSPPVR 123.26 0.00029094 0 173390 186520 180720 254380 244880 202230 279020 254220 187740 349990 TRUE FALSE FALSE 211960.0073 208331.8915 247575.8484 268276.1353 220498.8874 212818.4501 219405.0976 191872.1464 225417.6959 262743.9341 0.806717034 0.792908473 0.942270463 1.021055486 0.839215901 0.809984256 0.835052951 0.730262897 0.857936823 1 18.00329793 -5.971941479 24.99952372 0.82856804 0.89276903 0.04162644 0.087514363 521.8805873 464981.8444 0.027961297 0.031704482 1.07E-06 5.971941479 0.064200991 STS(ph)PSAAGGQQK ddPTM_HeLa_A485_30min_R1 1 STSPSAAGGQQK 12 0 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 0 STS(1)PSAAGGQQK 197.36 1.40E-15 0 301660 355200 214020 384520 359420 337500 412630 509410 352120 619330 TRUE FALSE FALSE 368763.2263 396737.5502 293194.9041 405525.3539 323634.8828 355170.9781 324468.2296 384476.3988 422787.2542 464942.4289 0.793137394 0.853304679 0.63060475 0.872205522 0.696075175 0.763903133 0.697867541 0.826933347 0.909332485 1 18.82669256 -7.821705303 2.064110215 0.994906897 0.759199582 0.567170373 0.069570086 0.207201112 1.768336027 0.062450553 0.017846335 1.51E-08 7.821705303 -0.235707315 STS(ph)PSAAGGQQK ddPTM_HeLa_A486_30min_R1 3 STSPSAAGGQQK 12 0 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 0 STS(1)PSAAGGQQK;ST(0.001)S(0.999)PSAAGGQQK;S(0.001)T(0.017)S(0.981)PSAAGGQQK ;; 185.51 4.68E-15 222580000 1000422 688808 532109 300356 624175 1067467 986070 762160 848839 1231284 TRUE FALSE FALSE 930297.584 634224.3455 738155.8552 699243.9472 545885.1513 935773.7747 739344.8564 588632.8058 922417.048 922962.4721 1.007947357 0.687161574 0.799768005 0.757608211 0.591448913 1.013880632 0.80105625 0.637764615 0.999409051 1 19.81591246 -6.269557339 24.99302019 0.862197016 0.765352219 0.134839753 0.145391125 1587.300533 4886859.342 0.050241254 0.045022611 5.38E-07 6.269557339 -0.096844797 STS(ph)PTFNK ddPTM_HeLa_A485_30min_R1 2 STSPTFNK 8 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 S(0.001)T(0.079)S(0.92)PTFNK;S(0.001)T(0.005)S(0.994)PTFNK ; 162.34 3.87E-05 1538250000 3719300 3962700 3214800 4263800 5116700 4197300 5931500 5837900 3750700 5869200 TRUE FALSE FALSE 4546645.454 4426103.294 4404088.299 4496720.597 4607263.382 4417064.138 4664186.569 4406145.872 4503431.087 4406116.455 1.031894073 1.004536158 0.999539695 1.020563266 1.04565175 1.002484656 1.058570879 1.000006676 1.02208626 1 22.0710762 -3.802385368 14.06137252 1.018339986 9.178329533 0.045441457 0.019624699 607324.4439 52063.00198 2.076925993 160000883.2 0.000157621 3.802385368 8.159989547 STS(ph)PTFNK ddPTM_HeLa_A486_30min_R1 3 STSPTFNK 8 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 S(0.005)T(0.095)S(0.9)PTFNK;STS(0.999)PTFNK;ST(0.002)S(0.998)PTFNK ;; 169.76 2.48E-05 2963040000 7129500 7381700 4613760 2874320 7553000 7328200 8869000 8681900 5910800 8530200 TRUE FALSE FALSE 6629758.867 6796747.208 6400331.433 6691562.22 6605632.311 6424121.192 6649882.393 6705220.895 6423152.903 6394182.398 1.036842313 1.06295798 1.000961661 1.046507873 1.033069109 1.004682193 1.039989475 1.048643983 1.00453076 1 22.60832847 STS(ph)PTRGGGNAAAR ddPTM_HeLa_A485_30min_R1 1 STSPTRGGGNAAAR 14 1 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 S(0.059)T(0.032)S(0.908)PTRGGGNAAAR 130.4 9.64E-06 221640000 70541 284370 174170 39715 242350 327150 335410 714970 118610 86786 TRUE FALSE FALSE 86232.60209 317624.5978 238602.7308 41884.52989 218220.7831 344279.0681 263746.9135 539622.4865 142413.939 65151.84738 1.323563422 4.875143386 3.662255798 0.642875553 3.349418195 5.284256425 4.048187796 8.282535464 2.18587722 1 15.99151847 -6.013303089 23.51028159 4.575943179 2.752575871 0.087815681 2.117653586 573.6627021 1013825.143 0.662877987 0.69323081 9.70E-07 6.013303089 -1.823367308 STS(ph)PVTDPSIPIR ddPTM_HeLa_A485_30min_R1 2 STSPVTDPSIPIR 13 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.173)T(0.173)S(0.653)PVTDPSIPIR;S(0.018)T(0.018)S(0.872)PVT(0.088)DPS(0.003)IPIR ; 113.61 0.00024341 929700000 1369530 1883590 1809770 1459330 2231030 1758590 2113960 2287670 1692830 2000800 TRUE FALSE FALSE 1674177.224 2103859.465 2479279.234 1539049.503 2008900.82 1850667.053 1662295.177 1726615.346 2032565.453 1502037.382 1.114604233 1.40067051 1.650610873 1.024641278 1.337450615 1.232104524 1.106693613 1.149515562 1.353205638 1 20.51848929 -5.280095385 24.99446975 1.184858262 1.389832796 0.268869635 0.16276727 1110.595366 1487922.409 0.045471751 0.067576477 5.25E-06 5.280095385 0.204974534 STS(ph)PVTDPSIPIR ddPTM_HeLa_A486_30min_R1 4 STSPVTDPSIPIR 13 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.001)T(0.001)S(0.998)PVTDPSIPIR;S(0.218)T(0.218)S(0.56)PVT(0.004)DPSIPIR;S(0.007)T(0.014)S(0.98)PVTDPSIPIR;S(0.013)T(0.03)S(0.957)PVTDPSIPIR ;;; 182.1 4.14E-17 2175640000 2339000 2601470 2239660 753490 2984640 2314160 2542200 2638250 2272260 2473210 TRUE FALSE FALSE 2175048.179 2395320.043 3106916.332 1754162.799 2610278.621 2028662.468 1906114.671 2037578.068 2469221.326 1853902.118 1.173227085 1.292042346 1.67587938 0.946200332 1.407991606 1.094266223 1.028163598 1.099075322 1.331904906 1 20.82213364 -5.279522791 24.99990842 1.139679294 1.371548943 0.290389301 0.178970204 1078.508198 1491010.248 0.049892455 0.0741573 5.25E-06 5.279522791 0.23186965 STS(ph)PVTDPSIPIRK ddPTM_HeLa_A485_30min_R1 2 STSPVTDPSIPIRK 14 1 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.151)T(0.151)S(0.697)PVT(0.001)DPSIPIRK;S(0.029)T(0.167)S(0.803)PVT(0.001)DPSIPIRK ; 91.657 0.00075559 474170000 597020 705470 569310 625180 885010 813070 983680 1155050 640210 923910 TRUE FALSE FALSE 729825.0393 787968.5797 779921.46 659332.0004 796895.2969 855641.088 773508.7321 871772.1765 768694.2746 693596.2403 1.052233269 1.136062357 1.124460334 0.950599156 1.14893255 1.233629939 1.115214713 1.256887114 1.108273416 1 19.40373655 -5.967688831 24.99891054 1.16092677 1.071882449 0.160335199 0.081995581 296.3196778 229259.0806 0.024399144 0.02766581 1.08E-06 5.967688831 -0.089044322 STS(ph)PVTDPSIPIRK ddPTM_HeLa_A486_30min_R1 1 STSPVTDPSIPIRK 14 1 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.175)T(0.175)S(0.649)PVTDPSIPIRK 67.326 0.0071095 143020000 245930 263130 168360 91286 277380 236520 292950 294460 193330 281270 TRUE FALSE FALSE 228691.577 242278.6205 233553.5008 212518.4213 242588.4139 207340.5672 219650.8115 227417.886 210088.0001 210838.1612 1.084678294 1.149121293 1.107738274 1.007969431 1.150590636 0.983411001 1.041798174 1.07863721 0.996442005 1 17.68577649 -5.480780181 0.326635941 1.00343426 1.157745891 0.354361507 0.048163107 3.692369328 0.575496125 0.054796183 0.213480672 3.31E-06 5.480780181 0.154311631 STS(ph)QGSINSPVYSR ddPTM_HeLa_A485_30min_R1 4 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 S(0.002)T(0.053)S(0.945)QGSINSPVYSR;STS(1)QGSINSPVYSR;S(0.001)T(0.025)S(0.974)QGSINSPVYSR;ST(0.007)S(0.99)QGS(0.003)INSPVYSR ;;; 282.52 3.31E-49 3738960000 1229000 1600780 1529650 1378640 1979630 1539180 1902690 2162030 1520720 1829740 TRUE FALSE FALSE 1502386.81 1787977.296 2095531.189 1453951.612 1782531.086 1619769.085 1496164.738 1631788.753 1825914.555 1373619.492 1.093743077 1.301653993 1.525554349 1.058482077 1.297689132 1.179197801 1.089213386 1.187948163 1.329272456 1 20.38955099 -5.297918995 24.99931821 1.174144087 1.306451264 0.188266489 0.135549029 1012.694629 693992.9182 0.037898024 0.056214169 5.04E-06 5.297918995 0.132307178 STS(ph)QGSINSPVYSR ddPTM_HeLa_A486_30min_R1 3 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 STS(0.999)QGSINSPVYSR;S(0.005)T(0.005)S(0.99)QGSINSPVYSR;S(0.001)T(0.092)S(0.908)QGSINSPVYSR ;; 229.15 3.78E-28 2790710000 2117400 2253690 1853070 741780 2663730 2428380 2794820 3001820 2317330 2765340 TRUE FALSE FALSE 1968981.194 2075099.397 2570628.331 1726901.327 2329620.145 2128791.166 2095526.475 2318371.115 2518198.03 2072880.865 0.94987668 1.001070265 1.240123528 0.833092416 1.123856264 1.026972269 1.010924704 1.118429503 1.214830082 1 20.98320577 -7.282361565 11.64073475 1.125017373 1.030110343 0.10428991 0.110953862 2.188177496 1206.269678 0.057136228 0.027964156 5.22E-08 7.282361565 -0.09490703 STS(ph)RDRLDDIIVLTK ddPTM_HeLa_A485_30min_R1 1 STSRDRLDDIIVLTK 15 2 G5E9N8;Q7Z3D4-2;Q7Z3D4-3;Q7Z3D4 G5E9N8 LYSMD3 LysM and putative peptidoglycan-binding domain-containing protein 3 1 0 S(0.154)T(0.154)S(0.692)RDRLDDIIVLTK 104.81 0.00022783 197940000 255770 258930 216840 297150 337330 315140 422780 434720 275170 509220 TRUE FALSE FALSE 312665.1541 289209.6111 297058.1395 313382.5521 303744.2408 331640.2431 332449.5992 328104.2384 330394.095 382280.8255 0.817893897 0.756537058 0.777067851 0.819770523 0.794557876 0.867530415 0.869647592 0.858280658 0.864270643 1 18.54427331 -9.986355003 0.13873203 1.204130627 0.713030999 0.865352965 0.023776154 10.49980022 0.303969615 0.994717697 0.21630039 1.03E-10 9.986355003 -0.491099628 STS(ph)RDRLDDIIVLTK ddPTM_HeLa_A486_30min_R1 1 STSRDRLDDIIVLTK 15 2 G5E9N8;Q7Z3D4-2;Q7Z3D4-3;Q7Z3D4 G5E9N8 LYSMD3 LysM and putative peptidoglycan-binding domain-containing protein 3 1 0 S(0.101)T(0.101)S(0.798)RDRLDDIIVLTK 144.01 6.26E-08 127790000 148570 152440 129860 67255 211430 172790 203820 187000 156770 190230 TRUE FALSE FALSE 138156.0102 140360.0992 180145.2698 156573.0389 184910.4779 151472.9266 152822.0802 144424.1822 170358.9498 142595.1698 0.968868794 0.984325762 1.263333604 1.098024843 1.296751343 1.062258468 1.071719894 1.012826608 1.19470351 1 17.12156559 -9.817675632 13.74005739 1.000000005 1.107284676 0.080852158 0.106990221 0 0 0.105696923 0.025635269 1.52E-10 9.817675632 0.107284671 STS(ph)SPYHAGNLLQR ddPTM_HeLa_A485_30min_R1 1 STSSPYHAGNLLQR 14 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.062)T(0.062)S(0.438)S(0.438)PYHAGNLLQR 162.46 5.50E-12 155800000 123520 170260 154400 85909 201580 152040 167730 182020 140030 140940 TRUE FALSE FALSE 150996.5979 190170.4259 211518.9851 90601.99114 181509.9874 160000.5793 131893.1153 137379.3096 168132.7366 105806.2518 1.427104687 1.797345834 1.999116134 0.856300924 1.715493974 1.512203453 1.246553139 1.298404463 1.589062401 1 16.69106535 -10.07485079 0.070931844 1.68E-09 2.262086117 0.224782104 0.296679428 161.4569766 2.17621156 50.92279177 21.8232303 8.42E-11 10.07485079 2.262086115 STS(ph)SPYHAGNLLQR ddPTM_HeLa_A486_30min_R1 2 STSSPYHAGNLLQR 14 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 S(0.071)T(0.071)S(0.429)S(0.429)PYHAGNLLQR;S(0.074)T(0.074)S(0.426)S(0.426)PYHAGNLLQR ; 139.34 2.80E-06 430710000 329610 375140 392490 36793 480870 299750 357400 367960 286100 223900 TRUE FALSE FALSE 306506.0411 345412.5402 544472.6392 85655.96342 420554.8007 262769.8926 267974.7398 284183.5405 310899.3784 167833.9827 1.826245414 2.058060797 3.244114396 0.510361263 2.505778592 1.56565368 1.596665559 1.693241953 1.852422099 1 17.35667533 -9.411891115 0.110795647 8.63E-13 2.671522854 0.166433296 0.649595634 62.39455217 1.809989601 32.09789732 12.24937517 3.87E-10 9.411891115 2.671522854 STS(ph)SSSDTMSTFKPMVAPR ddPTM_HeLa_A485_30min_R1 1 STSSSSDTMSTFKPMVAPR 19 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 S(0.079)T(0.079)S(0.38)S(0.38)S(0.066)S(0.013)DT(0.003)MSTFKPMVAPR 63.691 0.0015013 0 59084 53570 42937 57577 73038 70625 80584 95230 63898 82840 TRUE FALSE FALSE 72227.03196 59834.5455 58821.18306 60722.28572 65766.08027 74322.81579 63366.57009 71874.69319 76721.74249 62189.51256 1.161402124 0.962132409 0.94583766 0.976407166 1.057510785 1.19510208 1.018926946 1.155736558 1.233676537 1 15.92438369 -6.012653158 6.58453986 1.124559677 1.004520497 0.260124682 0.086708601 0.197676052 40.2319966 0.027792523 0.029453722 9.71E-07 6.012653158 -0.120039181 STS(ph)SSSDTMSTFKPMVAPR ddPTM_HeLa_A486_30min_R1 2 STSSSSDTMSTFKPMVAPR 19 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 S(0.012)T(0.046)S(0.89)S(0.046)S(0.003)S(0.003)DTMSTFKPMVAPR;ST(0.005)S(0.987)S(0.007)SSDTMSTFKPMVAPR ; 145.04 1.45E-10 0 225360 215460 114359 81833 199580 231810 219740 246960 169844 228340 TRUE FALSE FALSE 209563.4278 198386.1649 158641.8674 190511.3596 174546.8154 203211.6391 164758.7278 190732.5991 184566.2147 171162.1778 1.224355933 1.159053755 0.926851186 1.113045897 1.019774448 1.187246165 0.962588406 1.114338469 1.078311909 1 17.38500441 -4.535788163 24.92397937 1.05631224 1.208030438 0.381111991 0.073844669 178.5046628 344635.6578 0.017624712 0.046688833 2.91E-05 4.535788163 0.151718198 STS(ph)TPNVHMVSTTLPVDSR ddPTM_HeLa_A485_30min_R1 5 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.135)T(0.135)S(0.724)T(0.005)PNVHMVSTTLPVDSR;S(0.018)T(0.059)S(0.911)T(0.012)PNVHMVSTTLPVDSR;S(0.053)T(0.167)S(0.771)T(0.008)PNVHMVSTTLPVDSR;S(0.035)T(0.14)S(0.823)T(0.002)PNVHMVSTTLPVDSR;S(0.131)T(0.131)S(0.736)T(0.002)PNVHMVSTTLPVDSR ;;;; 260.08 2.92E-58 11971230000 1238760 1853666 1658741 1284787 2158993 1591870 2058404 2165910 1675117 1798091 TRUE FALSE FALSE 1514317.888 2070436.114 2272378.322 1354971.661 1944036.076 1675217.852 1618609.17 1634717.176 2011297.617 1349860.005 1.121833288 1.533815437 1.683417772 1.003786804 1.440176069 1.241030807 1.199094101 1.211027196 1.4900046 1 20.36437836 -5.259546839 24.99998436 1.243611959 1.455101475 0.203445557 0.197142564 278.7747611 3682520.452 0.052843905 0.085934041 5.50E-06 5.259546839 0.211489516 STS(ph)TPNVHMVSTTLPVDSR ddPTM_HeLa_A486_30min_R1 3 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.144)T(0.144)S(0.708)T(0.003)PNVHMVSTTLPVDSR;S(0.019)T(0.072)S(0.837)T(0.073)PNVHMVSTTLPVDSR;S(0.051)T(0.162)S(0.763)T(0.024)PNVHMVSTTLPVDSR ;; 314.39 1.34E-89 5449670000 1301270 1412250 1215420 221011 1764940 1284210 1464330 1554210 1274780 1206250 TRUE FALSE FALSE 1210057.693 1300338.167 1686063.174 514524.7773 1543564.768 1125777.227 1097939.146 1200350.311 1385278.957 904197.1486 1.338267539 1.438113545 1.864707466 0.569040478 1.707110855 1.245057263 1.21426964 1.327531626 1.532054109 1 19.78627784 -11.00088807 3.571388879 0.642270909 1.35512613 0.097727101 0.327519287 0.185649612 4.62E-05 0.06310837 0.073072769 9.98E-12 11.00088807 0.712855221 STS(ph)TPTS(ph)PGPR ddPTM_HeLa_A485_30min_R1 2 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 2 0 ST(0.001)S(0.998)T(0.074)PT(0.187)S(0.741)PGPR;STS(0.998)T(0.053)PT(0.393)S(0.554)PGPR ; 161.87 1.47E-07 3079100000 2863500 4236600 4003300 3308700 4885700 3877200 4427900 4843100 3203200 4046300 TRUE FALSE FALSE 3500475.696 4732033.516 5484287.261 3489445.903 4399262.553 4080204.197 3481842.992 3655322.131 3846052.859 3037631.877 1.152369951 1.557803483 1.805448285 1.148738901 1.448254012 1.343218784 1.146235994 1.203345988 1.266135271 1 21.53451561 -6.983371949 0.491312941 1.044389279 1.484881182 0.323217845 0.186526638 1.119449176 0.603452474 0.191690048 0.153717182 1.04E-07 6.983371949 0.440491903 STS(ph)TPTS(ph)PGPR ddPTM_HeLa_A486_30min_R1 1 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 2 0 ST(0.002)S(0.997)TPT(0.027)S(0.972)PGPR 150.56 1.31E-06 1944900000 2219800 2919900 2658600 1028500 3574900 2709700 2935700 2993200 2394500 2791800 TRUE FALSE FALSE 2064203.483 2688516.49 3688081.12 2394399.978 3126502.707 2375404.764 2201156.809 2311713.701 2602057.188 2092715.108 0.986375773 1.284702576 1.762342664 1.14415955 1.49399347 1.135082723 1.051818664 1.104648068 1.24338816 1 20.99694449 -6.393186053 7.143903896 1.106788517 1.344289351 0.243429413 0.200523186 0.388003747 20.79994584 0.071580131 0.062949643 4.04E-07 6.393186053 0.237500834 STS(ph)TPTSPGPR ddPTM_HeLa_A485_30min_R1 2 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 STS(0.932)T(0.064)PT(0.005)SPGPR;STS(0.916)T(0.078)PT(0.005)SPGPR ; 209.95 4.37E-15 1904040000 2259560 2888100 2863400 2984400 3953400 3086500 4220000 4221800 2990300 3928000 TRUE FALSE FALSE 2762191.327 3225838.172 3922690.816 3147430.215 3559785.615 3248104.367 3318362.526 3186396.93 3590425.781 2948821.889 0.936710127 1.093941341 1.330256951 1.067351754 1.20718909 1.101492219 1.125318059 1.080566087 1.217579737 1 21.49170725 -9.34842778 14.19484959 0.99999706 1.131980341 0.129886009 0.099834283 0 0 0.094932304 0.023024466 4.48E-10 9.34842778 0.131983282 STS(ph)TPTSPGPR ddPTM_HeLa_A486_30min_R1 1 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 ST(0.003)S(0.996)T(0.001)PTSPGPR 190.88 7.42E-11 567040000 579710 663800 514070 209920 788660 900920 942900 996300 678680 1005600 TRUE FALSE FALSE 539075.3226 611198.0705 713131.6713 488704.3688 689738.9088 789773.6503 706976.447 769464.2391 737508.5288 753791.2146 0.715152037 0.810832043 0.94605994 0.648328555 0.915026463 1.047735281 0.937894251 1.020792262 0.978398945 1 19.52380546 -5.992165153 24.93821389 0.993106146 0.792585258 0.64295796 0.07599761 118.29512 376528.4699 0.022996251 0.026028786 1.02E-06 5.992165153 -0.200520888 STS(ph)VPENPK ddPTM_HeLa_A486_30min_R1 1 STSVPENPK 9 0 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4;P04150-13;P04150-12;P04150-11;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 STS(1)VPENPK 164.65 3.84E-07 0 490120 509830 302390 245590 542950 609810 738380 704820 460000 748600 TRUE FALSE FALSE 455765.119 469429.214 419483.5063 571745.9314 474848.1482 534577.8423 553629.5142 544347.8721 499873.1704 561145.6874 0.812204618 0.836554971 0.747548303 1.01889036 0.846211882 0.952654283 0.986605665 0.970065144 0.890808183 1 19.09801585 -5.257619894 24.99966294 0.947968481 0.802547863 0.640572633 0.052570569 214.0504072 1401017.541 0.014111801 0.023317146 5.53E-06 5.257619894 -0.145420618 STS(ph)YGYS(ph)R ddPTM_HeLa_A485_30min_R1 1 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 S(0.109)T(0.135)S(0.755)Y(0.002)GYS(1)R 83.182 0.014045 5209800000 2965200 4096400 3341000 3069000 3881600 3540900 4283800 4421300 3197100 3743400 TRUE FALSE FALSE 3624798.51 4575438.346 4576974.931 3236651.699 3495134.275 3726296.049 3368531.135 3336969.243 3838728.644 2810239.272 1.289854051 1.628131238 1.628678019 1.151735274 1.243714124 1.325971096 1.198663462 1.187432428 1.36597929 1 21.42226154 -1.000002691 0.084009943 0.781912071 2.771599747 0.404957217 0.146133244 176.0900413 1.074999607 3.626630151 40.51884302 0.09999938 1.000002691 1.989687676 STS(ph)YGYS(ph)R ddPTM_HeLa_A486_30min_R1 3 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 S(0.006)T(0.009)S(0.984)Y(0.001)GYS(1)R;S(0.046)T(0.06)S(0.892)Y(0.002)GYS(1)R;S(0.171)T(0.206)S(0.622)Y(0.002)GYS(1)R ;; 98.156 0.0053242 9338950000 22113020 22163880 16158300 6208210 19157610 18966030 20539670 19638750 17581780 21597330 TRUE FALSE FALSE 20563011.49 20407533.43 22415226.49 14453026.63 16754683.92 16626194.05 15400427.32 15167435.34 19105782.85 16189217.99 1.270167064 1.260563261 1.38457747 0.892756317 1.034928551 1.026991795 0.95127679 0.93688499 1.180154771 1 23.94852996 -5.258639853 24.99999731 1.000794238 1.300648673 0.755693323 0.07861991 115.5535728 1031897.012 0.021127734 0.034590999 5.51E-06 5.258639853 0.299854435 STSAPQMS(ph)PGSSDNQSSS(ph)PQPAQQK ddPTM_HeLa_A485_30min_R1 2 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 STSAPQMS(0.988)PGS(0.009)S(0.003)DNQS(0.001)S(0.081)S(0.918)PQPAQQK;STSAPQMS(0.989)PGS(0.009)S(0.002)DNQS(0.001)S(0.025)S(0.975)PQPAQQK ; 159.27 2.04E-10 1317090000 455100 496230 366110 552580 661180 562990 758560 740410 491100 788550 TRUE FALSE FALSE 556335.4249 554259.7819 501549.3241 582766.0462 595350.5977 592467.2859 596487.4591 558823.2866 589659.2654 591978.9972 0.939789127 0.936282849 0.847241754 0.984437031 1.005695473 1.000824841 1.007615915 0.943991745 0.996081395 1 19.17518647 -5.402317003 8.834323435 0.991125248 0.910758986 0.634520892 0.029042771 0.211283765 14.45658646 0.008291076 0.012304835 3.96E-06 5.402317003 -0.080366263 STSAPQMS(ph)PGSSDNQSSS(ph)PQPAQQK ddPTM_HeLa_A486_30min_R1 3 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 STSAPQMS(0.965)PGS(0.028)S(0.007)DNQSS(0.033)S(0.967)PQPAQQK;STSAPQMS(0.996)PGS(0.004)S(0.001)DNQSS(0.174)S(0.826)PQPAQQK;STSAPQMS(0.986)PGS(0.013)S(0.001)DNQSS(0.011)S(0.988)PQPAQQK ;; 226.1 2.49E-38 2005970000 1201850 1108110 721390 440870 1167980 1165570 1440120 1366710 906710 1396040 TRUE FALSE FALSE 1117606.521 1020299.328 1000731.527 1026367.64 1021481.057 1021773.824 1079786.744 1055539.968 985304.3528 1046462.497 1.067985259 0.974998464 0.956299466 0.980797346 0.976127726 0.976407494 1.031844664 1.008674435 0.941557252 1 19.99708918 STSAPQMS(ph)PGSSDNQSSSPQPAQQK ddPTM_HeLa_A485_30min_R1 1 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 STSAPQMS(0.895)PGS(0.087)S(0.018)DNQSSSPQPAQQK 220.78 2.43E-38 236800000 50992 47458 41725 67801 68424 55375 86335 89285 53392 75670 TRUE FALSE FALSE 62334.99448 53007.80027 57160.81382 71504.79695 61611.46631 58274.34937 67888.82196 67387.71376 64107.28466 56806.8616 1.097314527 0.933123196 1.0062308 1.258735211 1.084577894 1.025832932 1.195081369 1.186260108 1.12851305 1 15.79377758 -5.068691357 24.95607461 1.130527838 1.003832978 0.282513557 0.082196743 184.5205032 67037.08732 0.021953627 0.038024825 8.54E-06 5.068691357 -0.126694859 STSAPQMS(ph)PGSSDNQSSSPQPAQQK ddPTM_HeLa_A486_30min_R1 2 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 STSAPQMS(0.997)PGS(0.003)SDNQSSSPQPAQQK;STS(0.001)APQMS(0.972)PGS(0.009)S(0.017)DNQSSSPQPAQQK ; 277.45 1.68E-75 439570000 297190 285350 164481 105578 298000 293240 342030 354690 247790 337140 TRUE FALSE FALSE 276358.5157 262737.8268 228172.4482 245790.9196 260622.0613 257063.0302 256450.4764 273934.8298 269268.6367 252717.9496 1.093545259 1.039648459 0.902873929 0.972589877 1.031276416 1.017193399 1.014769536 1.083954782 1.065490746 1 17.94716861 -7.108421746 6.038108817 1.055802837 1.006168291 0.109848499 0.050312854 0.471803679 22.44190659 0.025621804 0.014682658 7.79E-08 7.108421746 -0.049634546 STSAPQMSPGS(ph)SDNQSSS(ph)PQPAQQK ddPTM_HeLa_A485_30min_R1 1 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 STSAPQMS(0.355)PGS(0.525)S(0.119)DNQS(0.007)S(0.184)S(0.809)PQPAQQK 103.31 0.00068607 276470000 53273 55373 46882 66179 75422 63158 91599 89354 56396 84535 TRUE FALSE FALSE 65123.39506 61848.39067 64225.60272 69794.1912 67912.72086 66464.85522 72028.12535 67439.7914 67714.15991 63461.98025 1.026179687 0.974573917 1.012032755 1.099779599 1.070132394 1.0473177 1.134980741 1.062680224 1.067003577 1 15.95360492 -5.145815237 5.514744825 1.073199139 0.999012095 0.417642441 0.034768076 0.190626582 7.921692721 0.009050368 0.016006904 7.15E-06 5.145815237 -0.074187044 STSAPQMSPGS(ph)SDNQSSSPQPAQQK ddPTM_HeLa_A486_30min_R1 1 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 STSAPQMS(0.135)PGS(0.589)S(0.276)DNQSSSPQPAQQK 177.34 4.66E-15 508500000 541460 538120 311810 155240 561480 525080 550340 567250 418730 456390 TRUE FALSE FALSE 503506.4501 495477.4114 432551.1826 361406.5654 491053.9428 460300.9682 412639.1111 438099.558 455025.8535 342106.9734 1.471780727 1.448311347 1.264374059 1.05641391 1.435381272 1.345488412 1.206169833 1.280592306 1.330068923 1 18.38408799 -13.99999999 0.13882502 9.32E-15 1.417488857 0.418276403 0.115666591 156.6927425 1.33576592 43.95703704 0.785126003 1.00E-14 13.99999999 1.417488857 STSESFIQHIVSLVHHVK ddPTM_HeLa_A485_30min_R1 2 STSESFIQHIVSLVHHVK 18 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 0 ; ; 218.43 7.04E-29 48446000 45237 64829 56378 22122.9 71828 47338 68648 79593 52804 55972 FALSE FALSE TRUE 55299.81458 72410.18761 77234.56828 23331.41801 64676.55212 49816.54448 53980.794 60072.69195 63401.27845 42019.21049 1.316060296 1.723263878 1.838077569 0.555255983 1.539213883 1.185565933 1.284669402 1.429648279 1.508864106 1 15.35876143 STSESFIQHIVSLVHHVK ddPTM_HeLa_A486_30min_R1 1 STSESFIQHIVSLVHHVK 18 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 0 0 161.91 2.63E-14 30047000 32304 29656 28918 5553 35272 28088 33151 28777 28572 25042 FALSE FALSE TRUE 30039.65642 27305.95055 40115.82405 12927.66463 30847.85686 24622.78814 24856.26916 22225.1053 31048.64397 18771.3202 1.600295349 1.454663298 2.13708059 0.68869235 1.643350416 1.311723836 1.324162014 1.183992658 1.654046899 1 14.1962425 -1 0.063116345 0.594625989 3.147418919 0.146145708 0.350200448 613.0400101 2.887149202 22.59876685 142.1319677 0.1 1 2.55279293 STSFMSVS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 STSFMSVSPSK 11 0 Q8TB45-2;Q8TB45 Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein 1 0 STSFMS(0.011)VS(0.988)PSK;STSFMS(0.006)VS(0.994)PSK ; 177.42 4.53E-09 369210000 465840 411070 316650 678600 487900 431410 651140 472840 349050 919360 TRUE FALSE FALSE 569464.5009 459141.0607 433792.0119 715670.1997 439322.9629 453997.9605 512018.6197 356875.2486 419101.1333 690180.4716 0.825095065 0.665247829 0.628519684 1.036931975 0.636533459 0.65779601 0.741861934 0.517075263 0.607234123 1 19.39661413 STSFMSVS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 STSFMSVSPSK 11 0 Q8TB45-2;Q8TB45 Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein 1 0 STSFMS(0.001)VS(0.998)PS(0.001)K 177.42 4.53E-09 214670000 332780 348380 132810 112720 288060 357240 398720 408120 290560 493720 TRUE FALSE FALSE 309453.8405 320773.1 184237.5888 262417.8566 251928.8287 313167.361 298956.0388 315199.9852 315745.9747 370089.2984 0.836159926 0.866745138 0.497819282 0.709066319 0.680724435 0.846194046 0.807794335 0.8516863 0.853161591 1 18.49751389 -7.610950534 0.636394237 0.988733753 0.71910924 0.409538065 0.099303204 0.756884954 0.688548872 0.103639033 0.048866717 2.45E-08 7.610950534 -0.269624513 STSGPRPGCQPSS(ph)PCVPK ddPTM_HeLa_A485_30min_R1 2 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 STSGPRPGCQPS(0.046)S(0.954)PCVPK;STSGPRPGCQPS(0.129)S(0.87)PCVPK ; 116.45 3.01E-05 1173810000 780140 665040 521340 895220 1030480 731430 1020840 1007880 568620 1201650 TRUE FALSE FALSE 953679.4515 742810.6429 714205.3608 944123.6018 927881.793 769726.5438 802729.1945 760695.8497 682736.8183 902100.7697 1.057176186 0.823423134 0.791713503 1.046583301 1.028578873 0.853260045 0.889844263 0.843249308 0.756829881 1 19.78292907 -6.377828216 18.39597981 0.86014786 0.939352962 0.133926355 0.100014763 6.85048987 1058.757934 0.036595707 0.032274133 4.19E-07 6.377828216 0.079205103 STSGPRPGCQPSS(ph)PCVPK ddPTM_HeLa_A486_30min_R1 3 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 STSGPRPGCQPS(0.037)S(0.963)PCVPK;STSGPRPGCQPS(0.207)S(0.793)PCVPK;STSGPRPGCQPS(0.032)S(0.968)PCVPK ;; 164.18 2.29E-12 1990360000 1053990 1129580 621310 507740 1103960 1164980 1452100 1409080 765170 1210570 TRUE FALSE FALSE 980110.7438 1040067.967 861897.8713 1182044.38 965491.0428 1021256.612 1088769.221 1088263.244 831495.5517 907435.3925 1.080088733 1.146162003 0.949817341 1.302620979 1.063977723 1.125431762 1.199831118 1.199273527 0.916313777 1 19.7914354 -7.766330216 24.99996548 0.958156825 1.132981686 0.373318723 0.090819484 133.3205623 681441.7636 0.076004667 0.022050527 1.71E-08 7.766330216 0.174824861 STSGS(ph)PRPAGAKPK ddPTM_HeLa_A485_30min_R1 1 STSGSPRPAGAKPK 14 2 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3-2 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 S(0.18)T(0.151)S(0.151)GS(0.518)PRPAGAKPK 54.974 0.029609 569160000 167830 164490 107260 200150 220850 230470 285750 294810 164420 295710 TRUE FALSE FALSE 205163.2045 183725.6746 146939.9375 211083.6877 198861.3985 242537.0528 224697.1781 222507.3853 197417.5859 221994.9391 0.924179647 0.827611996 0.661906699 0.950849098 0.895792487 1.092534153 1.012172525 1.002308368 0.889288678 1 17.76016726 -5.451323781 8.769840527 0.983310104 0.806199109 0.494368804 0.080688857 0.332542806 38.42742962 0.023429563 0.034729953 3.54E-06 5.451323781 -0.177110995 STSLSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 STSLSSPR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 S(0.005)T(0.005)S(0.004)LS(0.064)S(0.924)PR 64.485 0.024876 245940000 255820 286140 295450 78380 336130 243740 249980 277360 282210 253620 TRUE FALSE FALSE 237888.3391 263465.2243 409856.1524 182472.6011 293969.4411 213669.837 187432.36 214211.1827 306672.19 190111.9012 1.251306928 1.385842878 2.155867938 0.959816823 1.546296887 1.123916155 0.985905452 1.126763666 1.613114108 1 17.53648932 -5.312628077 24.99999003 1.202096783 1.576494693 0.269660235 0.30384983 483.855258 236308.5008 0.085238973 0.126429987 4.87E-06 5.312628077 0.37439791 STSQGS(ph)INSPVYSR ddPTM_HeLa_A485_30min_R1 2 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 STSQGS(0.682)INS(0.318)PVYSR;STSQGS(0.752)INS(0.248)PVYSR ; 137.17 7.74E-06 104750000 170906 214360 179535 176562 241270 196181 240160 281260 173971 263110 TRUE FALSE FALSE 208923.4501 239427.5373 245952.4676 186207.135 217248.3116 206452.7338 188847.8541 212280.544 208885.3839 197521.5192 1.057725006 1.212159254 1.245193276 0.94271822 1.099871612 1.045216413 0.956087493 1.074721098 1.057532287 1 17.59165031 -5.257344233 24.99947661 1.029347416 1.175739186 0.51743828 0.064721868 283.1263309 1728384.532 0.017614991 0.029099859 5.53E-06 5.257344233 0.14639177 STSQGSINS(ph)PVYSR ddPTM_HeLa_A485_30min_R1 5 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 STSQGS(0.001)INS(0.999)PVYSR;STSQGS(0.002)INS(0.998)PVYSR;STSQGS(0.44)INS(0.56)PVYSR;STSQGS(0.001)INS(0.999)PVYSR;STS(0.001)QGS(0.388)INS(0.612)PVYSR ;;;; 310.24 8.37E-84 1839260000 804455 1017340 957650 861188 1298150 946259 1200740 1362630 882921 1259440 TRUE FALSE FALSE 983403.2394 1136309.063 1311924.586 908232.5198 1168901.628 995803.658 944192.0899 1028442.856 1060115.146 945484.7863 1.040104773 1.201826914 1.387568161 0.960599825 1.236298717 1.053220181 0.998632769 1.087741306 1.121239772 1 19.85069472 -6.031665161 1.275232776 1.055331376 1.183262984 0.167017821 0.114345723 0.798360153 2.693492558 0.05071981 0.055984183 9.30E-07 6.031665161 0.127931608 STSQGSINS(ph)PVYSR ddPTM_HeLa_A486_30min_R1 4 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 STSQGS(0.08)INS(0.92)PVYSR;STSQGS(0.022)INS(0.978)PVYSR;STSQGS(0.484)INS(0.516)PVYSR;STSQGS(0.083)INS(0.917)PVYSR ;;; 268.08 2.78E-42 1779399000 739210 736680 589121 241022 873430 678292 774740 787370 622662 763281 TRUE FALSE FALSE 687395.1963 678302.7939 817244.4284 561111.3966 763876.265 594611.2294 580891.8576 608103.0392 676634.8435 572150.4695 1.201423809 1.185532181 1.428373255 0.980705997 1.335096807 1.039256736 1.015278128 1.062837613 1.182616951 1 19.12603508 -6.284167775 24.8245443 1.061130235 1.221555983 0.335722382 0.116814536 895.4773837 978060.2404 0.039665697 0.035008361 5.20E-07 6.284167775 0.160425748 STSSHGTDEMESSSYRDRS(ph)PHR ddPTM_HeLa_A485_30min_R1 2 STSSHGTDEMESSSYRDRSPHR 22 2 A0A0D9SGE8;Q5JRC6;Q8IWS0-2;Q8IWS0-3;Q8IWS0-4;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 1 0 STSSHGTDEMES(0.04)S(0.182)S(0.138)YRDRS(0.641)PHR;STSSHGTDEMES(0.004)S(0.066)S(0.261)YRDRS(0.668)PHR ; 153.23 3.36E-10 254285000 35731.3 101181 85494 16391.1 141411 97282 125252 297754 82250 31572.7 TRUE FALSE FALSE 43679.60441 113013.2378 117121.7883 17286.50429 127331.6243 102375.5351 98490.88699 224729.3646 98756.82056 23702.20694 1.842849677 4.768047046 4.941387466 0.729320452 5.372142123 4.319240624 4.155346682 9.481368768 4.166566464 1 14.53273378 STST(ph)PTS(ph)PGPR ddPTM_HeLa_A486_30min_R1 1 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 2 0 ST(0.002)S(0.175)T(0.819)PT(0.04)S(0.964)PGPR 149.23 8.26E-06 0 451960 506710 437350 156050 570050 430700 466500 475830 393630 416710 TRUE FALSE FALSE 420279.9379 466556.4542 606703.6326 363292.2863 498549.0135 377564.613 349776.7659 367493.8963 427750.1653 312363.1037 1.345485216 1.493634967 1.942302485 1.163044809 1.596056025 1.208736271 1.119776189 1.176495854 1.36940042 1 18.25286453 -6.306603857 7.313447528 1.181219558 1.512138149 0.400739645 0.203666051 0.282402334 39.66229098 0.071214816 0.063118035 4.94E-07 6.306603857 0.330918591 STST(ph)PTSPGPR ddPTM_HeLa_A485_30min_R1 1 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 STS(0.081)T(0.901)PT(0.018)SPGPR 141.39 0.00012035 0 180910 232950 218970 177750 277840 218460 234220 265020 197160 209570 TRUE FALSE FALSE 221152.8054 260191.4761 299976.1151 187460.0324 250177.274 229898.2278 184176.9836 200023.4295 236728.2035 157328.0559 1.405679389 1.653814856 1.906691807 1.191523225 1.590163132 1.461266565 1.170655689 1.271378003 1.504678884 1 17.26341644 -7.739318954 0.1706926 0.804363623 1.805729261 0.391364656 0.197709393 4.32663286 0.683839356 1.810395397 1.475248486 1.82E-08 7.739318954 1.001365638 STSTPNVHMVS(ph)TTLPVDSR ddPTM_HeLa_A486_30min_R1 1 STSTPNVHMVSTTLPVDSR 19 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.007)T(0.007)S(0.047)T(0.324)PNVHMVS(0.537)T(0.065)T(0.013)LPVDSR 117.18 2.87E-05 491380000 182270 191550 174440 45416 245340 195400 230000 218100 182880 183720 TRUE FALSE FALSE 169493.8142 176370.8804 241987.8397 105730.7432 214567.1695 171293.5347 172451.5673 168443.3911 198732.1856 137715.3162 1.230755002 1.280691831 1.757159961 0.767748615 1.558048701 1.243823414 1.252232301 1.223127505 1.443065239 1 17.07132949 -10.78860623 2.629613854 0.915431519 1.304493825 0.124137519 0.244034991 29283467.8 21587096.23 15893865.6 0.058501865 1.63E-11 10.78860623 0.389062306 STSTPTS(ph)PGPR ddPTM_HeLa_A485_30min_R1 7 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 STST(0.005)PT(0.01)S(0.985)PGPR;STST(0.004)PT(0.092)S(0.904)PGPR;STST(0.004)PT(0.003)S(0.993)PGPR;STST(0.005)PT(0.003)S(0.992)PGPR;STST(0.018)PT(0.001)S(0.981)PGPR;STST(0.005)PT(0.003)S(0.991)PGPR;STST(0.001)PT(0.009)S(0.99)PGPR ;;;;;; 165.78 5.40E-08 24316100000 12095000 18257380 15597420 12142390 17974410 15121490 16694660 17925580 11422470 15747860 TRUE FALSE FALSE 14785491.02 20392421.77 21367554.72 12805698.02 16184814.63 15913227.83 13127709.51 13529303.4 13714854.96 11822208.32 1.250653907 1.724924923 1.80740807 1.083190016 1.369017885 1.346045291 1.110427862 1.14439731 1.160092479 1 23.49499621 -5.958912324 0.721682177 1.095696948 1.58524081 0.439545801 0.192920148 0.701163435 0.811132987 0.128976775 0.180779705 1.10E-06 5.958912324 0.489543862 STSTPTS(ph)PGPR ddPTM_HeLa_A486_30min_R1 5 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 STST(0.004)PT(0.002)S(0.994)PGPR;STST(0.016)PT(0.002)S(0.981)PGPR;STST(0.195)PT(0.009)S(0.796)PGPR;STSTPT(0.005)S(0.994)PGPR;STST(0.005)PT(0.003)S(0.991)PGPR ;;;; 182.71 1.74E-10 26365940000 20156000 27432400 24151300 8396000 30574700 20880600 24212500 22581100 20534200 21330900 TRUE FALSE FALSE 18743168.49 25258556.72 33503330.15 19546312.31 26739736.03 18304563.87 18154276.41 17439876.47 22314120.99 15989503.8 1.172217019 1.579696095 2.095332699 1.22244646 1.672330572 1.144786236 1.135387104 1.090707798 1.395548059 1 23.93062183 -6.270225988 24.13476533 1.157836366 1.562419101 0.374232346 0.255110704 444.4866562 1220896.882 0.089264299 0.079975916 5.37E-07 6.270225988 0.404582735 STSTS(ph)SPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK ddPTM_HeLa_A486_30min_R1 1 STSTSSPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPK 41 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.162)T(0.162)S(0.162)T(0.162)S(0.175)S(0.175)PVRPAAT(0.003)FPPATHCPLGGTLDGVYPTLMEPVLLPK 86.579 4.07E-05 487730000 58034 50091 40471 15975 60556 51721 60104 67319 43723 55305 TRUE FALSE FALSE 53966.11629 46121.60673 56142.45505 37190.60733 52960.50182 45340.18888 45065.34348 51991.93326 47512.94484 41456.26802 1.301760116 1.112536389 1.354257335 0.897104566 1.277502881 1.09368718 1.087057413 1.254139259 1.146097975 1 15.33930263 STSYGYS(ph)R ddPTM_HeLa_A485_30min_R1 7 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R ;;;;;; 133.83 0.00050546 23381210000 7833269 11767460 12038510 9981400 13683930 10897660 14884870 15715170 10943820 12479600 TRUE FALSE FALSE 9575752.665 13143562.08 16492055.81 10526658.61 12321509.88 11468244.63 11704595.93 11860999.92 13140144.29 9368665.39 1.022104245 1.402927902 1.760342069 1.123602794 1.315183046 1.224106546 1.249334397 1.26602877 1.402563091 1 23.15941211 STSYGYS(ph)R ddPTM_HeLa_A486_30min_R1 3 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 STSYGYS(1)R;STSYGYS(1)R;STSYGYS(1)R ;; 142.55 0.00038753 17572400000 3792500 4817500 4208000 1579010 5179900 4359900 5501000 5569100 4390700 4670300 TRUE FALSE FALSE 3526665.334 4435743.755 5837450.294 3676015.079 4530188.641 3822019.866 4124591.616 4301137.503 4771289.411 3500826.481 1.007380787 1.267056159 1.667449194 1.050042068 1.294034042 1.091747873 1.178176536 1.228606309 1.362903713 1 21.73926413 STT(ph)PGGTGIKPFLER ddPTM_HeLa_A485_30min_R1 2 STTPGGTGIKPFLER 15 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.072)T(0.012)T(0.916)PGGTGIKPFLER;S(0.005)T(0.024)T(0.971)PGGTGIKPFLER ; 189.77 5.16E-18 978310000 1588160 1302520 1216330 1880650 2379600 1349610 1805460 1782600 1464470 2573700 TRUE FALSE FALSE 1941440.713 1454838.384 1666301.083 1983385.147 2142678.669 1420273.493 1419708.722 1345414.555 1758375.696 1932123.955 1.004822029 0.752973628 0.862419348 1.026531006 1.108975779 0.735084045 0.734791739 0.696339669 0.910073958 1 20.88175622 -6.296521608 24.99434621 0.79124997 0.939393951 0.216255205 0.124239762 917.2469132 653489.9461 0.045276424 0.039931591 5.05E-07 6.296521608 0.148143981 STT(ph)PGGTGIKPFLER ddPTM_HeLa_A486_30min_R1 2 STTPGGTGIKPFLER 15 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.094)T(0.094)T(0.812)PGGTGIKPFLER;S(0.002)T(0.093)T(0.905)PGGTGIKPFLER ; 155.79 2.72E-08 1093970000 1635950 2029090 1327240 821980 2223700 2252300 2533100 2464300 1744780 1974400 TRUE FALSE FALSE 1521278.353 1868297.519 1841182.873 1913610.981 1944782.811 1974434.126 1899291.588 1903232.685 1896018.935 1479997.389 1.027892593 1.262365415 1.244044676 1.292982674 1.314044758 1.334079466 1.283307391 1.285970299 1.281096135 1 20.4971632 -4.258929899 5.068851869 1.270990129 1.015994949 0.354236247 0.089978785 0.161297363 13.35220579 0.020528076 0.144362819 5.51E-05 4.258929899 -0.25499518 STT(ph)PPPAEPVSLPQEPPK ddPTM_HeLa_A485_30min_R1 3 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.115)T(0.115)T(0.77)PPPAEPVSLPQEPPK;S(0.147)T(0.147)T(0.705)PPPAEPVSLPQEPPK;S(0.175)T(0.175)T(0.65)PPPAEPVSLPQEPPK ;; 178.02 6.60E-13 1091140000 551750 480550 392500 709510 636250 440380 666300 551250 477370 978190 TRUE FALSE FALSE 674484.884 536746.1423 537702.0833 748268.7347 572902.716 463437.6158 523939.5618 416055.0732 573173.7803 734345.2353 0.918484728 0.730917989 0.732219748 1.018960427 0.780154468 0.631089566 0.713478534 0.566566042 0.780523591 1 19.48609895 -6.002522318 24.96557341 0.709236757 0.841500073 0.115956121 0.133302058 173.0548671 1712901.532 0.040382033 0.045017633 9.94E-07 6.002522318 0.132263317 STT(ph)PPPAEPVSLPQEPPK ddPTM_HeLa_A486_30min_R1 2 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.001)T(0.001)T(0.997)PPPAEPVSLPQEPPK;S(0.024)T(0.024)T(0.952)PPPAEPVSLPQEPPK ; 265.93 1.75E-57 644700000 415290 471110 225750 185963 358970 478360 562320 482330 317440 594000 TRUE FALSE FALSE 386180.3156 433777.5278 313166.4458 432931.262 313944.6353 419344.8068 421621.5884 372513.9882 344955.9548 445258.5337 0.867317045 0.974214967 0.703336202 0.972314351 0.705083927 0.941800718 0.94691411 0.836624028 0.774731821 1 18.76428374 STT(ph)PPPAEPVSLPQEPPKPR ddPTM_HeLa_A485_30min_R1 5 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.171)T(0.171)T(0.658)PPPAEPVSLPQEPPKPR;S(0.121)T(0.121)T(0.757)PPPAEPVSLPQEPPKPR;S(0.001)T(0.016)T(0.983)PPPAEPVSLPQEPPKPR;S(0.032)T(0.032)T(0.935)PPPAEPVSLPQEPPKPR;S(0.322)T(0.322)T(0.356)PPPAEPVSLPQEPPKPR ;;;; 197.28 4.36E-26 63384540000 5302420 4926370 3790600 6752950 6728270 5380440 7699020 7874780 4743030 8158820 TRUE FALSE FALSE 6481925.036 5502466.118 5192900.68 7121846.559 6058379.814 5662151.519 6054061.482 5943477.858 5694912.615 6124976.326 1.058277566 0.898365287 0.847823796 1.162754953 0.989127058 0.924436474 0.988422022 0.970367483 0.929785245 1 22.54627284 STT(ph)PPPAEPVSLPQEPPKPR ddPTM_HeLa_A486_30min_R1 7 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.131)T(0.131)T(0.739)PPPAEPVSLPQEPPKPR;S(0.006)T(0.006)T(0.987)PPPAEPVSLPQEPPKPR;S(0.005)T(0.006)T(0.989)PPPAEPVSLPQEPPKPR;S(0.006)T(0.033)T(0.961)PPPAEPVSLPQEPPKPR;S(0.32)T(0.32)T(0.359)PPPAEPVSLPQEPPKPR;S(0.058)T(0.15)T(0.792)PPPAEPVSLPQEPPKPR;S(0.298)T(0.298)T(0.403)PPPAEPVSLPQEPPKPR ;;;;;; 193.42 1.78E-19 86348480000 6491840 6711040 3706950 2723110 6370010 6604810 8423980 7967530 5141730 8310030 TRUE FALSE FALSE 6036795.54 6179232.749 5142380.316 6339537.698 5571023.948 5789975.695 6316211.104 6153497.349 5587419.296 6229144.399 0.969121143 0.991987399 0.825535577 1.017722065 0.894348179 0.929497749 1.013977314 0.987855949 0.896980217 1 22.57060259 -6.711472849 24.99660488 0.973691801 0.937010398 0.088152376 0.057681391 284.0681052 142109.0095 0.021523174 0.01667175 1.94E-07 6.711472849 -0.036681403 STT(ph)PTS(ph)SPFR ddPTM_HeLa_A485_30min_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 2 0 S(0.017)T(0.165)T(0.818)PT(0.084)S(0.735)S(0.182)PFR 152.69 7.72E-06 364710000 642470 689780 654310 546580 861900 669380 703630 715460 560160 762770 TRUE FALSE FALSE 785385.235 770443.7707 896366.4971 576438.2814 776086.2097 704427.7017 553293.7024 539992.3132 672578.9739 572625.4767 1.371551331 1.345458423 1.565362586 1.006658461 1.355312052 1.23017178 0.966240108 0.943011331 1.174553004 1 19.12723233 -6.072800179 0.731287759 1.007868861 1.408877468 0.503530931 0.142262584 0.589205261 0.701112958 0.095990174 0.117130729 8.46E-07 6.072800179 0.401008606 STT(ph)PTS(ph)SPFR ddPTM_HeLa_A486_30min_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 2 0 S(0.006)T(0.043)T(0.95)PT(0.002)S(0.764)S(0.234)PFR 155.26 5.55E-06 606360000 1423900 1650800 1080600 482600 1516300 1191800 1231600 1249400 1169700 1200000 TRUE FALSE FALSE 1324091.963 1519984.596 1499037.259 1123517.189 1326111.515 1044767.833 923440.6535 964938.8942 1271090.538 899512.1893 1.47201114 1.689787658 1.666500218 1.249029421 1.474256303 1.161482686 1.026601601 1.072735762 1.413088731 1 19.77878331 -5.776643602 1.100820791 1.129550085 1.615230711 0.620597982 0.149880633 0.327997287 0.845836405 0.065712412 0.097061058 1.67E-06 5.776643602 0.485680626 STT(ph)PTSSPFR ddPTM_HeLa_A485_30min_R1 2 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.001)T(0.058)T(0.939)PT(0.002)SSPFR;S(0.002)T(0.063)T(0.934)PT(0.001)SSPFR ; 199.4 4.87E-13 4440520000 2480290 3057500 2772330 2313640 3331500 2682440 3201200 3426900 2323420 3023400 TRUE FALSE FALSE 3032021.954 3415048.028 3797930.233 2440028.295 2999804.162 2822888.411 2517237.469 2586447.402 2789709.082 2269722.022 1.335856076 1.504610695 1.673301927 1.075033978 1.321661478 1.243715479 1.109050996 1.139543687 1.229097244 1 21.11408419 -5.268909486 24.99758088 1.173678339 1.504591682 0.652905389 0.114911754 350.1459133 1171709.655 0.032183887 0.04881246 5.38E-06 5.268909486 0.330913344 STT(ph)PTSSPFR ddPTM_HeLa_A486_30min_R1 2 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;H7C5N8;A0A2R8YET2;A0A2R8Y7F4;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 ST(0.024)T(0.972)PT(0.002)S(0.002)SPFR;S(0.004)T(0.023)T(0.972)PT(0.001)SSPFR ; 235.55 4.55E-20 6666100000 1636200 1641900 1294000 472980 1789300 1293100 1518500 1462000 1267900 1396100 TRUE FALSE FALSE 1521510.829 1511789.864 1795071.455 1101121.343 1564869.309 1133570.469 1138555.239 1129134.515 1377802.593 1046507.473 1.453893898 1.444604939 1.715297311 1.052186794 1.495325499 1.08319386 1.087957103 1.078955043 1.316572149 1 19.99715118 -5.713824225 1.039310866 1.119932204 1.517454702 0.458060279 0.171122104 0.479534353 1.100428343 0.073367474 0.119000905 1.93E-06 5.713824225 0.397522498 STTAHS(ph)WQR ddPTM_HeLa_A485_30min_R1 1 STTAHSWQR 9 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 STTAHS(1)WQR 108.35 0.00074564 159670000 56368 102210 114170 52666 104960 83652 103560 108000 96181 77471 TRUE FALSE FALSE 68906.86713 114162.5704 156406.234 55543.01022 94509.81386 88031.88937 81433.55999 81512.83066 115483.6445 58158.90545 1.184803369 1.96294221 2.689291224 0.955021588 1.625027382 1.513644191 1.400190725 1.401553727 1.985657116 1 15.8277125 -5.280798381 24.96667647 1.440987557 1.947405475 0.237681259 0.436103803 1183.786606 1526688.464 0.121884414 0.181093527 5.24E-06 5.280798381 0.506417918 STTS(ph)VSEEDVSSR ddPTM_HeLa_A485_30min_R1 2 STTSVSEEDVSSR 13 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 STT(0.014)S(0.986)VSEEDVSSR;STT(0.031)S(0.969)VSEEDVSSR ; 255.72 3.31E-41 1091020000 1222760 1340540 1395650 1276230 1773770 1121190 1442520 1358500 1279710 1689530 TRUE FALSE FALSE 1494758.744 1497304.492 1911959.013 1345947.213 1597167.231 1179893.775 1134313.818 1025325.745 1536536.059 1268361.264 1.178496053 1.180503169 1.507424632 1.061170229 1.25923684 0.930250559 0.894314459 0.808386202 1.211434078 1 20.27453429 -6.261176188 24.99973712 0.952241026 1.239421719 0.465676384 0.143237694 20.85684619 1981183.436 0.048168109 0.045319439 5.48E-07 6.261176188 0.287180693 STTS(ph)VSEEDVSSR ddPTM_HeLa_A486_30min_R1 1 STTSVSEEDVSSR 13 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 ST(0.007)T(0.05)S(0.943)VSEEDVSSR 140.62 1.62E-06 623810000 678890 847570 745770 343450 985750 823930 1013900 934210 753870 839430 TRUE FALSE FALSE 631303.3168 780405.4664 1034552.116 799568.957 862108.0432 722281.8937 760211.4961 721510.7767 819216.0586 629231.2642 1.00329299 1.240252211 1.644152437 1.270707612 1.370097279 1.147879857 1.208159129 1.146654366 1.301931587 1 19.26323083 -6.267792429 24.64064056 1.173043014 1.318923326 0.160509146 0.162987116 851.0135834 3300689.444 0.058295091 0.052712648 5.40E-07 6.267792429 0.145880312 STTSQVTPAEEKDGHS(ph)PMSK ddPTM_HeLa_A486_30min_R1 1 STTSQVTPAEEKDGHSPMSK 20 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 STTSQVTPAEEKDGHS(0.864)PMS(0.136)K 80.944 0.00124 381610000 477210 452760 225020 200070 464240 538590 677950 635520 366720 717570 TRUE FALSE FALSE 443760.0433 416881.6487 312153.7702 465773.071 406010.6903 472144.2418 508319.7394 490825.9693 398507.5849 537885.8014 0.825007915 0.775037466 0.580334654 0.86593301 0.754826934 0.877777849 0.945032827 0.912509622 0.74087768 1 19.03694038 -6.143934424 1.755736448 0.895634544 0.746201397 0.338672599 0.093231843 0.432487858 2.647848032 0.03753665 0.037296543 7.18E-07 6.143934424 -0.149433146 STTSVS(ph)EEDVSSR ddPTM_HeLa_A486_30min_R1 2 STTSVSEEDVSSR 13 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 STTS(0.001)VS(0.999)EEDVSSR;STTS(0.001)VS(0.999)EEDVSSR ; 198.81 2.12E-21 550080000 362540 419760 412890 160247 473470 443400 468410 481200 396480 422250 TRUE FALSE FALSE 337127.8182 386496.6889 572772.0656 373063.1144 414082.9777 388697.8162 351208.8637 371641.2645 430847.2056 316515.8516 1.065121435 1.221097417 1.809615735 1.17865539 1.308253522 1.228051657 1.109609082 1.174163198 1.361218414 1 18.27191823 -6.12571691 1.754763631 1.177011683 1.345792708 0.11162151 0.201554575 0.852547877 5.223465426 0.083077224 0.083641705 7.49E-07 6.12571691 0.168781025 STTTGHLIYK ddPTM_HeLa_A485_30min_R1 4 STTTGHLIYK 10 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A6PW80;Q5JR01;A0A2R8Y660;A0A2R8YDN5 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ;;; ;;; 91.584 0.010457 2061780000 4358350 5677020 4772450 3387090 7522100 5409120 7391600 8010450 5309180 6027160 FALSE FALSE TRUE 5327849.921 6340898.105 6537977.853 3572118.15 6773173.312 5692333.159 5812324.276 6045874.578 6374683.727 4524699.934 1.177503481 1.40139638 1.444952803 0.789470728 1.496933147 1.258057604 1.284576737 1.336193486 1.40886331 1 22.10939069 -10.00378294 4.474633348 0.999990735 1.288394821 0.172508545 0.189663497 56548581.29 2.120130011 5857.029609 0.045681263 9.91E-11 10.00378294 0.288404086 STTTGHLIYK ddPTM_HeLa_A486_30min_R1 4 STTTGHLIYK 10 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A6PW80;Q5JR01;A0A2R8Y660;A0A2R8YDN5 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ;;; ;;; 82.749 0.017687 1059433000 4106650 4495450 3204610 550462 6521210 4144990 4742790 4707980 3973160 3186880 FALSE FALSE TRUE 3818795.042 4139214.17 4445520.814 1281503.355 5703259.034 3633623.277 3556093.778 3636075.728 4317556.708 2388864.505 1.598581683 1.73271199 1.860934685 0.53644874 2.387435128 1.52106713 1.48861259 1.522093748 1.807367768 1 21.1878936 -10.38158684 3.426116564 0.995437424 1.600443071 0.147822207 0.436412407 76327506.22 114246877.1 3485557.922 0.107124443 4.15E-11 10.38158684 0.605005647 STTTIGLVQALGAHLYQNVFACVR ddPTM_HeLa_A485_30min_R1 2 STTTIGLVQALGAHLYQNVFACVR 24 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ; ; 378.9 1.04E-175 125838000 92578 98077 113976 91103 132249 100488 169522 167721 72908 143346 FALSE FALSE TRUE 113171.6567 109546.252 156140.4653 96079.72621 119081.8252 105749.3963 133302.2398 126587.1618 87539.96685 107612.4803 1.051659217 1.017969772 1.450951274 0.892830701 1.106580063 0.982687101 1.238724723 1.176324172 0.813474112 1 16.71548588 -7.75610236 24.99697147 0.906737039 1.114764164 0.231543785 0.151555545 171.6074856 803786.3164 0.106628983 0.037656107 1.75E-08 7.75610236 0.208027125 STTTIGLVQALGAHLYQNVFACVR ddPTM_HeLa_A486_30min_R1 2 STTTIGLVQALGAHLYQNVFACVR 24 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ; ; 362.08 3.57E-154 84936000 51193.1 64680 63057 25168.29 83033.5 64665.3 95584.6 81502.3 75762.1 83574.3 FALSE FALSE TRUE 47604.72805 59554.52124 87474.35913 58593.05105 72618.66417 56687.55275 71668.32209 62946.00547 82329.21983 62646.7513 0.759891408 0.950640217 1.396311178 0.93529273 1.159176855 0.904876176 1.144007001 1.004776851 1.314181791 1 15.93495208 -4.523900131 24.99613124 1.102364964 0.807578505 0.34240788 0.150141078 30.00941064 734439.1013 0.036019067 0.097070409 2.99E-05 4.523900131 -0.294786459 STVNEK(ac)PK ddPTM_HeLa_A485_30min_R1 2 STVNEKPK 8 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 1 ; STVNEK(1)PK;STVNEK(1)PK 140.14 0.0019424 81281000 58326 57601 50053 74305 82123 60334 95185 94539 64527 113953 FALSE TRUE FALSE 71300.41748 64336.93589 68569.68758 78364.094 73946.54577 63492.99495 74847.94716 71353.16202 77476.97702 85546.61425 0.833468608 0.752068758 0.80154765 0.91603969 0.864400613 0.742203482 0.874937574 0.834085167 0.905669707 1 16.38442314 -8.079985762 1.287744048 1.000352837 0.823218761 0.542337079 0.050086624 0.445447528 1.615337586 0.049993503 0.015279547 8.32E-09 8.079985762 -0.177134076 STVNEK(ac)PK ddPTM_HeLa_A486_30min_R1 1 STVNEKPK 8 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 1 STVNEK(1)PK 159.58 4.91E-06 0 33360 34640 20316 14599 36526 36682 44723 43229 30320 44920 FALSE TRUE FALSE 31021.63627 31895.00024 28182.89928 33987.20979 31944.56849 32156.5478 33532.83237 33386.70038 32948.16201 33671.73962 0.921295918 0.947233514 0.836989701 1.009368989 0.948705616 0.955001083 0.995874664 0.991534764 0.978510834 1 15.03925064 -5.282710334 24.9992879 0.980337666 0.906379077 0.578137941 0.031541326 590.9015818 694472.2519 0.008812878 0.013086285 5.22E-06 5.282710334 -0.073958589 STVS(ph)ETFMSKPSIAK ddPTM_HeLa_A485_30min_R1 2 STVSETFMSKPSIAK 15 1 B7ZM87;O75044;A0A075B7B5;E9PDX4;A0A087WW56;Q5VZB4;A0A286YEY3;P0DMP2;A0A087X0L1;P0DJJ0 B7ZM87 SRGAP2;SRGAP2B;SRGAP2C SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C 1 0 S(0.228)T(0.029)VS(0.742)ET(0.002)FMSKPSIAK;S(0.045)T(0.012)VS(0.942)ET(0.001)FMSKPSIAK ; 154.48 1.47E-08 649210000 327440 300262 204470 366710 327740 374510 459620 482770 303820 577390 TRUE FALSE FALSE 400277.8983 335375.029 280111.9617 386742.4387 295109.0548 394118.7645 361418.4322 364369.9005 364793.8872 433457.2991 0.92345405 0.773721032 0.64622735 0.892227307 0.680826129 0.909244729 0.833804006 0.840613138 0.841591289 1 18.72553035 -6.291298934 24.93434913 0.871886041 0.781196813 0.233492115 0.090590666 1142.631887 954155.8026 0.030969133 0.027315782 5.11E-07 6.291298934 -0.090689228 STVS(ph)ETFMSKPSIAK ddPTM_HeLa_A486_30min_R1 2 STVSETFMSKPSIAK 15 1 B7ZM87;O75044;A0A075B7B5;E9PDX4;A0A087WW56;Q5VZB4;A0A286YEY3;P0DMP2;A0A087X0L1;P0DJJ0 B7ZM87 SRGAP2;SRGAP2B;SRGAP2C SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B;SLIT-ROBO Rho GTPase-activating protein 2C 1 0 S(0.008)T(0.049)VS(0.919)ET(0.025)FMSKPSIAK;S(0.007)T(0.001)VS(0.973)ET(0.019)FMSKPSIAK ; 149.34 2.86E-08 674770000 821190 740560 289490 267500 679720 796610 916080 910680 643680 1060860 TRUE FALSE FALSE 763628.8216 681875.3285 401588.2808 622753.5187 594463.1795 698332.3575 686867.0947 703338.044 699474.7007 795213.751 0.960281208 0.857474267 0.505006711 0.783127201 0.747551433 0.878169369 0.863751531 0.884464137 0.879605892 1 19.60098318 -6.318703872 4.464115749 0.893794987 0.7611928 0.247112275 0.113058783 0.354255877 14.80450639 0.042752813 0.038062344 4.80E-07 6.318703872 -0.132602186 STVTGERQS(ph)GDGQESTEPVENK ddPTM_HeLa_A485_30min_R1 4 STVTGERQSGDGQESTEPVENK 22 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 STVTGERQS(1)GDGQESTEPVENK;STVTGERQS(1)GDGQESTEPVENK;STVT(0.001)GERQS(0.999)GDGQESTEPVENK;STVTGERQS(1)GDGQESTEPVENK ;;; 295.25 1.18E-87 5435720000 1813330 1852840 1724940 2288810 2711470 2139310 2773450 2545500 1996220 3185770 TRUE FALSE FALSE 2216699.003 2069513.52 2363067.087 2413841.895 2441506.526 2251320.964 2180879.75 1921212.134 2396843.044 2391616.169 0.926862358 0.865320091 0.98806285 1.009293183 1.02086052 0.941338745 0.911885351 0.803311233 1.002185499 1 21.18955444 -9.418620432 13.8573488 0.999991468 0.939630337 0.067900821 0.065384055 0 0 0.067597197 0.016394728 3.81E-10 9.418620432 -0.06036113 STVTGERQS(ph)GDGQESTEPVENK ddPTM_HeLa_A486_30min_R1 4 STVTGERQSGDGQESTEPVENK 22 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 STVTGERQS(1)GDGQESTEPVENK;STVTGERQS(1)GDGQESTEPVENK;STVT(0.001)GERQS(0.999)GDGQESTEPVENK;S(0.001)T(0.001)VT(0.02)GERQS(0.979)GDGQESTEPVENK ;;; 296.86 1.03E-87 7954000000 2391590 2463660 1587400 1183490 2724180 2742190 3554150 3548200 2173450 3569460 TRUE FALSE FALSE 2223951.891 2268430.609 2202083.792 2755224.53 2382487.942 2403886.478 2664864.078 2740352.317 2361846.396 2675643.983 0.831183784 0.84780734 0.823010762 1.029742577 0.890435334 0.898432861 0.995971099 1.024184209 0.882720725 1 21.35145474 -5.242623227 24.96463004 0.957228497 0.835381283 0.554084839 0.051832877 638.2176201 846764.2043 0.014182051 0.024508848 5.72E-06 5.242623227 -0.121847214 STWLILHHK ddPTM_HeLa_A485_30min_R1 1 STWLILHHK 9 0 P00167-2;P00167-3;P00167 P00167-2 CYB5A Cytochrome b5 0 0 76.679 0.023009 5257500 6660.8 7695.7 5054.8 7028.3 8990 8006.6 10966 12290 5347.8 13392 FALSE FALSE TRUE 8142.471981 8595.645171 6924.780868 7412.238232 8094.924034 8425.813195 8623.024516 9275.85823 6421.054407 10053.62086 0.809904421 0.85498004 0.688784764 0.737270515 0.805174986 0.838087423 0.857703372 0.922638556 0.638680779 1 13.29542757 -6.123946599 3.193275511 0.847335072 0.772593904 0.132607826 0.094496784 0.587423337 11.30014357 0.032219717 0.032551979 7.52E-07 6.123946599 -0.074741168 SVAAEGALLPQT(ph)PPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SVAAEGALLPQTPPSPR 17 0 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 2 0 SVAAEGALLPQT(1)PPS(1)PR;SVAAEGALLPQT(1)PPS(1)PR ; 102.08 0.00087353 205370000 200670 235760 171365 111555 255790 217810 273980 270310 177811 265320 TRUE FALSE FALSE 186604.0693 217077.519 237722.1173 259705.6777 223706.4331 190938.8167 205427.3061 208766.3138 193223.8006 198882.1451 0.938264565 1.091488222 1.195291399 1.305827014 1.124819088 0.960060123 1.032909747 1.049698623 0.971549259 1 17.60155424 -6.177647799 6.466650044 1.008107255 1.143356261 0.335548441 0.089483558 0.310515353 19.89906695 0.032220566 0.032214815 6.64E-07 6.177647799 0.135249006 SVAAEGALLPQTPPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SVAAEGALLPQTPPSPR 17 0 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 SVAAEGALLPQT(0.007)PPS(0.993)PR;SVAAEGALLPQTPPS(1)PR ; 273.8 2.40E-59 677300000 572290 749360 739520 603330 859990 661690 912340 914390 654120 828130 TRUE FALSE FALSE 699593.9361 836991.1334 1013099.222 636288.3902 774366.376 696335.0652 717411.1059 690134.4188 785395.8841 621692.4316 1.125305538 1.346310637 1.629582685 1.023477781 1.245577936 1.120063604 1.153964677 1.110089787 1.263319037 1 19.24584149 -5.288794342 24.99925664 1.14079894 1.364990863 0.381232983 0.137452417 762.5727882 696901.2891 0.038199074 0.056673349 5.14E-06 5.288794342 0.224191923 SVAAEGALLPQTPPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SVAAEGALLPQTPPSPR 17 0 Q86X27;Q86X27-3;H7C2H2 Q86X27 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 SVAAEGALLPQT(0.083)PPS(0.917)PR 167.99 5.05E-12 223660000 157890 190410 144960 83074 225440 172980 222160 225590 145810 192100 TRUE FALSE FALSE 146822.7263 175321.2181 201092.3942 193400.4703 197163.2131 151639.4863 166573.2182 174228.0816 158448.9282 143996.9096 1.019624148 1.217534589 1.39650493 1.343087646 1.369218364 1.053074588 1.156783285 1.2099432 1.100363394 1 17.13567832 -6.266868001 24.99838622 1.120451243 1.277502011 0.345907484 0.112139477 602.4102859 2774047.042 0.041314082 0.037448766 5.41E-07 6.266868001 0.157050768 SVAEGLS(ph)GSLVQEPFQLATEKR ddPTM_HeLa_A485_30min_R1 1 SVAEGLSGSLVQEPFQLATEKR 22 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SVAEGLS(0.541)GS(0.459)LVQEPFQLATEKR 142.94 1.29E-09 78534000 49604 58406 67207 51998 76780 54875 77889 86621 54923 80827 TRUE FALSE FALSE 60638.23867 65236.07364 92069.66602 54838.51907 69135.51361 57748.17015 61247.37886 65377.06393 65945.54232 60678.31641 0.999339505 1.075113442 1.517340484 0.903758086 1.139377585 0.951710159 1.009378349 1.077437012 1.086805736 1 15.88889344 SVAEGLSGS(ph)LVQEPFQLATEKR ddPTM_HeLa_A486_30min_R1 2 SVAEGLSGSLVQEPFQLATEKR 22 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SVAEGLS(0.17)GS(0.829)LVQEPFQLATEKR;SVAEGLS(0.121)GS(0.879)LVQEPFQLATEKR ; 184.76 8.98E-20 174187000 131512 124946 160803 79855 191973 121116 164000 157142 113335 163060 TRUE FALSE FALSE 122293.6879 115044.8239 223070.2281 185906.4756 167893.9563 106173.9393 122965.4654 121364.197 123158.9691 122228.7147 1.000531571 0.941225834 1.825023103 1.520972189 1.373604858 0.868649725 1.00602764 0.992927049 1.007610768 1 16.89922373 -6.253455406 24.60047642 0.976537513 1.348405232 0.362525154 0.236365023 592.041914 1824219.256 0.086420903 0.084910795 5.58E-07 6.253455406 0.371867718 SVASLNRS(ph)PER ddPTM_HeLa_A486_30min_R1 2 SVASLNRSPER 11 1 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 S(0.039)VAS(0.039)LNRS(0.923)PER;S(0.018)VAS(0.016)LNRS(0.966)PER ; 50.088 0.011522 0 522000 602020 546250 175599 741630 516200 593730 600730 575500 562130 TRUE FALSE FALSE 485410.4956 554313.7427 757772.6291 408803.3463 648607.85 452516.4923 445172.4742 463956.8928 625384.8034 421368.9891 1.151984384 1.315506734 1.798358799 0.970179004 1.539287102 1.073919781 1.056490833 1.101070332 1.484173775 1 18.68472462 -6.282413082 24.61889781 1.144032827 1.356110723 0.164020123 0.239220205 1294.999705 1520063.088 0.082714348 0.073023703 5.22E-07 6.282413082 0.212077896 SVASLNRS(ph)PERR ddPTM_HeLa_A485_30min_R1 1 SVASLNRSPERR 12 2 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 S(0.002)VAS(0.012)LNRS(0.987)PERR 45.614 0.028777 32128000 15680 14636 17405 16452 19927 23119 19035 24316 22230 16570 TRUE FALSE FALSE 19167.9619 16347.55288 23843.83378 17350.7311 17942.99791 24329.47509 14968.01675 18352.46287 26691.35709 12439.40395 1.540906782 1.314174936 1.916798737 1.394820136 1.442432289 1.955839298 1.203274434 1.475349056 2.145710293 1 13.60262974 -10.43146778 3.468941584 0.993831772 1.584429611 0.273644148 0.291834723 88738584 114240895.9 5334312.452 0.069279658 3.70E-11 10.43146778 0.590597839 SVAVS(ph)DEEEVEEEAER ddPTM_HeLa_A485_30min_R1 3 SVAVSDEEEVEEEAER 16 0 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER ;; 331.34 1.26E-90 3396500000 317734 323127 375779 341931 446314 376749 448663 431749 352007 408905 TRUE FALSE FALSE 388412.8321 360913.8918 514795.2896 360609.8247 401877.4111 396474.9951 352802.4848 325861.8808 422651.5761 306972.5088 1.265301683 1.175720566 1.677007793 1.174730031 1.309164174 1.291565152 1.149296679 1.061534409 1.376838524 1 18.22774993 -6.702105183 4.106046669 1.151058603 1.321869415 0.212686899 0.15951637 0.36414281 12.36012713 0.06410273 0.047192424 1.99E-07 6.702105183 0.170810812 SVAVS(ph)DEEEVEEEAER ddPTM_HeLa_A486_30min_R1 5 SVAVSDEEEVEEEAER 16 0 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER ;;;; 355.43 1.43E-104 3549907000 938696 941836 793932 429869 977747 811912 933560 1100506 842638 966124 TRUE FALSE FALSE 872898.2578 867201.4853 1101363.733 1000756.756 855108.8541 711746.5524 699973.4138 849944.8077 915678.5403 724200.262 1.205327178 1.197460883 1.520799964 1.381878479 1.180762973 0.9828035 0.966546756 1.173632284 1.264399626 1 19.46602917 -5.951268114 4.729762006 1.08089117 1.329141227 0.48772428 0.120046644 0.191509875 9.365353943 0.041746739 0.046937865 1.12E-06 5.951268114 0.248250057 SVAVS(ph)DEEEVEEEAERR ddPTM_HeLa_A485_30min_R1 1 SVAVSDEEEVEEEAERR 17 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 SVAVS(1)DEEEVEEEAERR 164.94 3.83E-12 90680000 38814 57101 43872 52970 58258 52184 46332 69182 46540 71037 TRUE FALSE FALSE 47448.04039 63778.46524 60102.07847 55863.61697 52457.62896 54916.27355 36432.7897 52215.00603 55880.15111 53328.78324 0.889726664 1.195948255 1.127010121 1.047532188 0.983664464 1.029767983 0.683173091 0.979114895 1.047842229 1 15.70262679 -5.975016971 1.833163129 0.929339138 1.081365452 0.172364948 0.119719693 0.532276653 3.627296747 0.045531182 0.05106819 1.06E-06 5.975016971 0.152026314 SVAVS(ph)DEEEVEEEAERR ddPTM_HeLa_A486_30min_R1 1 SVAVSDEEEVEEEAERR 17 1 Q9Y6X9;Q9Y6X9-2 Q9Y6X9 MORC2 MORC family CW-type zinc finger protein 2 1 0 SVAVS(1)DEEEVEEEAERR 145.05 1.96E-08 0 42278 39605 31739 27580 49680 40472 45952 41391 36764 52490 TRUE FALSE FALSE 39314.53052 36466.55556 44029.1908 64207.63382 43448.67115 35478.97613 34454.32357 31967.17286 39950.73312 39346.16235 0.999196063 0.926813529 1.119021225 1.631865218 1.104267063 0.901713763 0.875671769 0.812459741 1.015365432 1 15.26393531 -6.19705524 4.927784515 0.906248941 1.171525953 0.291628837 0.183480185 0.293976891 14.35429504 0.067701366 0.067068528 6.35E-07 6.19705524 0.265277012 SVCPGGS(ph)SPGSSSGGGR ddPTM_HeLa_A485_30min_R1 5 SVCPGGSSPGSSSGGGR 17 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 SVCPGGS(0.5)S(0.5)PGSSSGGGR;SVCPGGS(0.736)S(0.264)PGSSSGGGR;SVCPGGS(0.5)S(0.5)PGSSSGGGR;SVCPGGS(0.5)S(0.5)PGSSSGGGR;SVCPGGS(0.493)S(0.493)PGS(0.004)S(0.004)S(0.004)GGGR ;;;; 286.85 1.43E-69 1131942000 580496 762816 697576 649097 835286 697474 866105 951779 621746 874916 TRUE FALSE FALSE 709625.3325 852020.6956 955638.391 684555.5255 752121.993 733992.6601 681054.5913 718353.7079 746524.7192 656815.5428 1.080402771 1.297199351 1.454957029 1.042234053 1.145103829 1.117501966 1.03690389 1.0936917 1.136581994 1 19.32512874 -5.290088357 24.99865359 1.087885558 1.279487741 0.472142907 0.09471072 608.3501456 530835.7012 0.026790376 0.039744412 5.13E-06 5.290088357 0.191602182 SVCPGGS(ph)SPGSSSGGGR ddPTM_HeLa_A486_30min_R1 4 SVCPGGSSPGSSSGGGR 17 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 SVCPGGS(0.5)S(0.5)PGSSSGGGR;SVCPGGS(0.731)S(0.269)PGSSSGGGR;SVCPGGS(0.5)S(0.5)PGSSSGGGR;SVCPGGS(0.5)S(0.5)PGSSSGGGR ;;; 228.99 1.46E-34 1201490000 1082820 1183240 873040 540770 1288220 1130490 1313460 1339820 1012620 1429740 TRUE FALSE FALSE 1006919.91 1089475.753 1211104.469 1258939.889 1126639.435 991021.6378 984818.4156 1034772.234 1100394.717 1071723.798 0.939533032 1.016563927 1.130052791 1.174686884 1.051240476 0.924698733 0.918910654 0.965521374 1.026752153 1 20.03150172 -6.15123205 5.823515128 0.962403196 1.071489483 0.340302713 0.065958083 0.275889265 12.52575801 0.024103391 0.024141891 7.06E-07 6.15123205 0.109086287 SVDETLR ddPTM_HeLa_A485_30min_R1 2 SVDETLR 7 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;H7C3T4;Q13162 Q06830;H7C3T4 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 ; ; 139.31 0.0038856 188550000 130255 200003 300688 143182 282107 200276 220748 228658 219939 213611 FALSE FALSE TRUE 159229.7754 223391.6111 411925.0039 151003.6701 254019.4365 210762.1417 173583.3865 172579.267 264078.7399 160361.7089 0.992941373 1.393048332 2.568724209 0.941644181 1.584040469 1.31429219 1.082449094 1.076187502 1.646769305 1 17.29097017 -6.024354629 1.436617338 1.216680402 1.565107444 0.079918429 0.449250247 1.053449397 4.452633351 0.189936602 0.20850201 9.45E-07 6.024354629 0.348427041 SVDETLR ddPTM_HeLa_A486_30min_R1 1 SVDETLR 7 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;H7C3T4;Q13162 Q06830;H7C3T4 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 100.39 0.031595 0 22654 36095 42345 17025 60843 39037 49496 52006 44770 38275 FALSE FALSE TRUE 21066.07159 33234.70074 58742.11804 39635.0604 53211.5036 34221.01184 37111.57728 40165.36908 48650.69965 28690.69087 0.734247623 1.158379242 2.047427798 1.381460648 1.854660937 1.192756633 1.293505878 1.399944298 1.695696345 1 14.80829509 -9.512188413 13.16989954 1.000000004 1.429481822 0.109324503 0.356098112 0 0 0.349776353 0.084833226 3.07E-10 9.512188413 0.429481818 SVDQGGGGS(ph)PR ddPTM_HeLa_A485_30min_R1 5 SVDQGGGGSPR 11 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 SVDQGGGGS(1)PR;SVDQGGGGS(1)PR;SVDQGGGGS(1)PR;SVDQGGGGS(1)PR;SVDQGGGGS(1)PR ;;;; 164.98 5.74E-08 10241620000 3749080 5356560 3404830 4246230 3977030 4160390 4668520 6039950 4321590 5421850 TRUE FALSE FALSE 4583049.912 5982963.096 4664418.304 4478190.793 3581062.929 4378221.587 3671052.564 4558642.792 5188893.473 4070282.577 1.125978314 1.469913448 1.14596916 1.100216191 0.879806957 1.075655438 0.901915898 1.119981895 1.274823891 1 21.95669753 -4.982310622 5.353065135 1.047935332 1.30293791 0.359141931 0.131056622 0.171113766 14.88422205 0.034916464 0.071655134 1.04E-05 4.982310622 0.255002578 SVDQGGGGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SVDQGGGGSPR 11 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 SVDQGGGGS(1)PR;SVDQGGGGS(1)PR;SVDQGGGGS(1)PR;SVDQGGGGS(1)PR ;;; 141.73 1.15E-06 7739681000 3719248 2391811 3313446 1125931 2784102 4217920 3117333 2951729 3892892 3987490 TRUE FALSE FALSE 3458547.921 2202275.186 4596501.028 2621224.269 2434893.966 3697555.915 2337343.312 2279684.742 4230331.013 2988996.55 1.157093313 0.736794154 1.537807405 0.876957944 0.814619196 1.237055933 0.781982606 0.76269233 1.415301404 1 21.5112298 SVDYNMPRS(ph)PVEMDEDFDVIFDPYAPK ddPTM_HeLa_A485_30min_R1 1 SVDYNMPRSPVEMDEDFDVIFDPYAPK 27 1 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(0.064)VDY(0.017)NMPRS(0.919)PVEMDEDFDVIFDPYAPK 75.758 0.0039294 11791000 3050.3 5299 3659.3 4546.3 12504 6345.6 13677 21211 5367.1 6518.7 TRUE FALSE FALSE 3728.828712 5918.671955 5013.027346 4794.652857 11259.05786 6677.845804 10754.79722 16008.96899 6444.22774 4893.708058 0.761963866 1.209445248 1.024382184 0.979758662 2.300721196 1.364577888 2.197678548 3.271337154 1.316839432 1 12.25671232 -5.752179144 24.98196006 2.009352816 1.011462405 0.342810165 0.610711753 207.3571482 559398.4503 0.179010051 0.227873008 1.77E-06 5.752179144 -0.997890412 SVDYNMPRS(ph)PVEMDEDFDVIFDPYAPK ddPTM_HeLa_A486_30min_R1 1 SVDYNMPRSPVEMDEDFDVIFDPYAPK 27 1 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 S(0.123)VDY(0.002)NMPRS(0.875)PVEMDEDFDVIFDPYAPK 73.817 0.004269 13556000 4649.8 5137.2 4088.8 3512 13513 8267.4 9723.7 12260 6236.1 9951.1 TRUE FALSE FALSE 4323.873032 4730.109563 5672.092862 8176.113487 11818.07354 7247.452245 7290.727413 9468.665634 6776.650169 7459.279789 0.579663607 0.634124164 0.760407576 1.096099586 1.58434512 0.971602145 0.977403666 1.269380678 0.908485854 1 12.86482063 -5.160589583 3.147652633 1.135905587 0.621339348 0.567441616 0.185572914 0.186036763 3.517216534 0.053828416 0.102076018 6.91E-06 5.160589583 -0.514566239 SVEAAAELSAK ddPTM_HeLa_A485_30min_R1 2 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 0 ; ; 261.16 6.44E-36 126770000 215680 249980 191699 251310 290190 277670 346370 387420 238340 367430 FALSE FALSE TRUE 263657.2719 279212.9865 262616.4374 265038.4289 261297.6647 292208.3718 272365.2199 292404.6375 286172.6518 275836.463 0.955846334 1.012241034 0.952072958 0.960853493 0.947291963 1.059353679 0.987415576 1.060065208 1.037472163 1 18.07345365 -6.256201723 24.99405447 1.030025041 0.967226934 0.575267762 0.027126676 324.3358917 1547732.317 0.008898629 0.008644651 5.54E-07 6.256201723 -0.062798107 SVEAAAELSAK ddPTM_HeLa_A486_30min_R1 1 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 0 153.12 0.00024954 21244000 40775 50012 35461 19628 60412 51796 59261 61537 40093 57932 FALSE FALSE TRUE 37916.88306 46048.86698 49192.44888 45694.97594 52834.56364 45405.93614 44433.271 47526.36844 43568.29352 43425.45013 0.873148878 1.060411967 1.132802279 1.052262574 1.216672792 1.045606574 1.02320807 1.094435828 1.003289394 1 15.40625318 -4.26751202 4.711335102 1.07748226 0.862082 0.470775753 0.062333905 0.147446247 9.12151893 0.015394431 0.103927715 5.40E-05 4.26751202 -0.21540026 SVEAAAELSAK(ac)DLK ddPTM_HeLa_A485_30min_R1 2 SVEAAAELSAKDLK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 1 ; SVEAAAELSAK(1)DLK;SVEAAAELSAK(1)DLK 351.81 1.43E-114 1430240000 2221600 2386200 1719330 2878400 2929800 2626400 3673800 3901600 2358400 4015700 FALSE TRUE FALSE 2715787.256 2665245.333 2355381.714 3035639.704 2638098.825 2763914.243 2888862.618 2944726.483 2831709.247 3014659.893 0.900860247 0.884094865 0.781309268 1.006959263 0.875090033 0.916824564 0.958271487 0.976802222 0.939313006 1 21.52356382 -6.42718696 0.450598845 0.991797153 0.860295761 0.360474701 0.051695418 1.295886352 0.565482889 0.050785516 0.065524754 3.74E-07 6.42718696 -0.131501392 SVEAAAELSAK(ac)DLK ddPTM_HeLa_A486_30min_R1 3 SVEAAAELSAKDLK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 1 ;; SVEAAAELSAK(1)DLK;SVEAAAELSAK(1)DLK;SVEAAAELSAK(1)DLK 321.08 1.44E-80 1445720000 3100458 2935585.2 1679484.2 1250545.12 2950722.4 3183460.9 3695412.7 3576819.1 2292487.8 3905580.6 FALSE TRUE FALSE 2883131.905 2702958.738 2329825.46 2911332.238 2580615.282 2790717.861 2770781.356 2762455.472 2491202.488 2927597.797 0.984811475 0.92326847 0.795814734 0.99444406 0.881478762 0.953244966 0.946435115 0.943591184 0.850937411 1 21.48128593 -6.291551015 24.77113322 0.935790765 0.91405441 0.031375596 0.06196569 3032.561043 2494703.175 0.021584671 0.019038551 5.11E-07 6.291551015 -0.021736355 SVEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_A485_30min_R1 2 SVEDEMDSPGEEPFYTGQGR 20 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR ; 307.92 2.61E-89 1345590000 713920 879710 821540 924280 1104030 828100 986080 954280 917500 1147120 TRUE FALSE FALSE 872729.041 982584.432 1125461.833 974771.076 994108.8967 871458.0355 775395.9525 720241.3337 1101633.834 861164.0952 1.013429433 1.140995587 1.306907521 1.13192257 1.154378013 1.011953518 0.900404414 0.83635783 1.279237999 1 19.71592864 -6.293303938 4.403172728 0.986497305 1.157710392 0.238620078 0.126492609 0.282345683 13.17651637 0.045358483 0.04110545 5.09E-07 6.293303938 0.171213087 SVEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_A486_30min_R1 4 SVEDEMDSPGEEPFYTGQGR 20 0 A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UJA3;S4R3W2;A0A590UK73;B1AKN7 A0A590UJU2 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR ;;; 340.49 1.59E-114 2131490000 1881667 2306170 1754576 682479 2469568 2052764 2209765 2218506 1973671 2048282 TRUE FALSE FALSE 1749771.86 2123420.69 2433994.816 1588845.603 2159811.754 1799514.849 1656858.424 1713400.613 2144750.391 1535378.855 1.139635247 1.382994616 1.585273112 1.034823163 1.406696299 1.172033106 1.079120257 1.11594647 1.396886758 1 20.55016325 -6.108760318 1.283479815 1.154138755 1.332352968 0.150645788 0.171669395 0.851912997 2.887260043 0.077941795 0.080239632 7.78E-07 6.108760318 0.178214212 SVEDVRPHHT(ph)DANNQSACFEAPDQK ddPTM_HeLa_A486_30min_R1 3 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.354)VEDVRPHHT(0.608)DANNQS(0.038)ACFEAPDQK;S(0.001)VEDVRPHHT(0.997)DANNQS(0.002)ACFEAPDQK;S(0.162)VEDVRPHHT(0.803)DANNQS(0.035)ACFEAPDQK ;; 230.52 1.36E-38 4412670000 2441046 2554864 1262484 206250 2461540 2388209 3057230 2863124 2157192 2310700 TRUE FALSE FALSE 2269941.281 2352407.272 1751351.615 480160.4233 2152790.7 2093576.055 2292278.718 2211253.167 2344179.139 1732085.68 1.310524824 1.358135628 1.011122969 0.277215168 1.242889267 1.208702364 1.32342109 1.276641908 1.353385209 1 20.72407887 -5.942562684 24.99999611 1.252137234 0.985023133 0.146399261 0.287789929 162.8393522 70875.79697 0.096115864 0.108985138 1.14E-06 5.942562684 -0.2671141 SVEERDS(ph)GSFVAFQNIPGSELMSSFAK ddPTM_HeLa_A485_30min_R1 2 SVEERDSGSFVAFQNIPGSELMSSFAK 27 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 S(0.007)VEERDS(0.836)GS(0.157)FVAFQNIPGSELMSSFAK;S(0.098)VEERDS(0.533)GS(0.367)FVAFQNIPGS(0.002)ELMSSFAK ; 168.87 3.38E-14 503720000 176961 209207 155513 198138 277933 231150 269469 340063 189040 246738 TRUE FALSE FALSE 216325.3639 233671.9388 213043.7301 208961.7772 250261.0146 243252.6566 211894.7468 256662.0161 226978.594 185230.7575 1.167869564 1.261518022 1.150153101 1.128115979 1.351076992 1.313241169 1.143950118 1.385633896 1.225382853 1 17.49896415 -4.238889953 21.93450408 1.229668357 1.167869239 0.007517836 0.11127139 5025.349695 4887892.032 0.026741001 1.051717388 5.77E-05 4.238889953 -0.061799118 SVEERDS(ph)GSFVAFQNIPGSELMSSFAK ddPTM_HeLa_A486_30min_R1 2 SVEERDSGSFVAFQNIPGSELMSSFAK 27 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SVEERDS(0.972)GS(0.028)FVAFQNIPGSELMSSFAK;S(0.001)VEERDS(0.85)GS(0.15)FVAFQNIPGSELMSSFAK ; 260.86 2.08E-63 492270000 350930 366730 304880 171992 472940 424890 473940 505520 329770 456920 TRUE FALSE FALSE 326331.6192 337668.9792 422937.701 400406.068 413619.4552 372471.3918 355355.1992 390424.1314 358354.7291 342504.2579 0.952781204 0.985882573 1.23483925 1.169054278 1.207633031 1.087494193 1.03752053 1.1399103 1.046278173 1 18.3857624 -9.824958103 13.74489404 0.999998781 1.101368081 0.09267847 0.088256768 0 0 0.091401997 0.02216824 1.50E-10 9.824958103 0.101369299 SVEST(ph)SPEPSK ddPTM_HeLa_A486_30min_R1 2 SVESTSPEPSK 11 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SVEST(0.854)S(0.146)PEPSK;SVES(0.001)T(0.645)S(0.354)PEPSK ; 296.28 3.74E-43 7915900000 5094500 5208600 2975800 1996470 4921600 5209300 6419700 6047900 4064900 6376500 TRUE FALSE FALSE 4737401.858 4795851.567 4128109.455 4647883.056 4304287.036 4566629.53 4813423.159 4670925.195 4417248.805 4779782.896 0.991133271 1.003361799 0.863660452 0.972404638 0.90051936 0.95540522 1.007038032 0.977225388 0.924152603 1 22.18851366 -6.53396943 24.76817826 0.976065485 0.9444295 0.099759203 0.043723058 493.870805 1102920.934 0.016888934 0.013094875 2.92E-07 6.53396943 -0.031635985 SVEST(ph)SPEPSKIMLVEPPVAK ddPTM_HeLa_A485_30min_R1 1 SVESTSPEPSKIMLVEPPVAK 21 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 S(0.001)VES(0.018)T(0.541)S(0.44)PEPSKIMLVEPPVAK 123.29 2.24E-06 220500000 18812 70599 29307 10202 73307 109220 138760 315460 35898 22116 TRUE FALSE FALSE 22996.6645 78854.93892 40148.87887 10759.30943 66008.29768 114938.5903 109112.7924 238092.9404 43102.39932 16602.88821 1.385100243 4.74947117 2.418186423 0.648038419 3.975711745 6.922806974 6.571916345 14.34045314 2.596078391 1 14.01914661 -6.163985778 3.235618247 7.176116293 2.466991636 0.20539142 3.476127992 0.336388673 6.727132765 1.181597191 1.171349406 6.86E-07 6.163985778 -4.709124656 SVESTS(ph)PEPSK ddPTM_HeLa_A485_30min_R1 6 SVESTSPEPSK 11 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SVES(0.025)T(0.287)S(0.688)PEPSK;SVEST(0.016)S(0.984)PEPSK;SVEST(0.021)S(0.979)PEPSK;SVEST(0.003)S(0.997)PEPSK;SVEST(0.025)S(0.975)PEPSK;SVEST(0.092)S(0.908)PEPSK ;;;;; 301.35 4.37E-44 11326640000 11121100 10818170 9150000 14421920 14464830 12138470 17454850 16086940 10692360 18766210 TRUE FALSE FALSE 13594950.33 12083260.88 12534965.76 15209752.97 13024660.74 12774021.52 13725478.7 12141592.74 12838218.58 14088139.21 0.964992617 0.857690337 0.889753116 1.079614046 0.924512495 0.906721699 0.974257742 0.861830832 0.911278515 1 23.74797773 -6.565425003 0.003516518 1.869118378 3.12E-08 0.023205692 0.064345043 118644.5247 210.7629686 55618.88243 56398.58159 2.72E-07 6.565425003 -1.869118347 SVESTS(ph)PEPSK ddPTM_HeLa_A486_30min_R1 4 SVESTSPEPSK 11 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SVEST(0.018)S(0.982)PEPSK;SVEST(0.023)S(0.977)PEPSK;SVEST(0.101)S(0.899)PEPSK;SVEST(0.063)S(0.937)PEPSK ;;; 313.87 1.12E-54 5723710000 10348400 10397800 6154850 4412350 10425300 11367600 13161300 12650400 8646990 13856300 TRUE FALSE FALSE 9623030.599 9573840.46 8538172.753 10272173.79 9117661.662 9965181.089 9868203.534 9770180.076 9396518.055 10386592.29 0.926485832 0.921749905 0.822037923 0.988984019 0.877829938 0.959427386 0.950090584 0.940653085 0.904677664 1 23.30821907 -5.921976717 1.152196079 0.94627709 0.901501951 0.152051115 0.045908227 0.982773043 2.765411717 0.020033335 0.025008664 1.20E-06 5.921976717 -0.044775139 SVETLK ddPTM_HeLa_A485_30min_R1 2 SVETLK 6 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2;H3BU13 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 128.75 0.016979 186759000 315480 374610 322190 375110 450030 416780 546960 572590 374550 551190 FALSE FALSE TRUE 385657.4376 418417.3808 441381.4884 395601.3095 405223.433 438601.9563 430097.5277 432161.4047 449718.7494 413788.4769 0.932015895 1.011186643 1.066683857 0.956047187 0.979300913 1.059966579 1.03941398 1.044401739 1.086832463 1 18.65853394 -6.262666963 24.99987633 1.048478751 0.992756731 0.348042069 0.03882646 135.9264532 2768171.237 0.01353782 0.0125915 5.46E-07 6.262666963 -0.055722021 SVFALTNGIYPHK ddPTM_HeLa_A485_30min_R1 3 SVFALTNGIYPHK 13 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 ;; ;; 154.28 6.12E-06 197661000 218488 260231 201163 224229 322273 273885 357355 373719 217806 361725 FALSE FALSE TRUE 267089.9018 290662.7517 275581.5648 236478.0625 290186.3686 288225.1951 281003.1849 282063.8293 261517.6664 271553.6146 0.983562315 1.070369666 1.014832983 0.870833787 1.068615378 1.06139333 1.034798176 1.038704013 0.96304248 1 18.05087754 -4.985718608 24.82771169 1.007743811 1.030874817 0.020155285 0.05733667 1083.403243 1883428.542 0.015637078 0.032521789 1.03E-05 4.985718608 0.023131007 SVFALTNGIYPHK ddPTM_HeLa_A486_30min_R1 2 SVFALTNGIYPHK 13 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 ; ; 102.97 0.0012977 181088000 34585 34482 26471 11308 38661 33986 37151 35758 32289 41502 FALSE FALSE TRUE 32160.7701 31749.52074 36721.28012 26325.59547 33811.77688 29793.15286 27855.42686 27616.68399 35087.83652 31109.62907 1.033788286 1.020568926 1.180383091 0.846220166 1.086858889 0.957682678 0.89539566 0.887721417 1.127877045 1 14.92507357 -5.25678274 24.99888455 0.968038593 1.072478973 0.22138833 0.091212871 621.6012326 3337015.864 0.024482307 0.040638307 5.54E-06 5.25678274 0.104440379 SVFGT(ph)PTLETANK ddPTM_HeLa_A485_30min_R1 1 SVFGTPTLETANK 13 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SVFGT(1)PTLETANK 149.32 3.24E-07 247530000 312850 258390 215370 357710 374100 247190 366060 312570 238020 431550 TRUE FALSE FALSE 382442.4032 288606.4628 295044.3253 377250.7915 336853.2905 260132.4862 287848.2906 235911.7174 285788.4308 323972.5271 1.180477884 0.890836224 0.910707855 1.164453032 1.039758814 0.802946128 0.888495988 0.728184329 0.882137857 1 18.30551195 -6.255328729 24.62632141 0.845123325 1.029149929 0.395753064 0.108245338 416.9685634 1680411.817 0.036107103 0.035221599 5.55E-07 6.255328729 0.184026604 SVFGT(ph)PTLETANK ddPTM_HeLa_A486_30min_R1 2 SVFGTPTLETANK 13 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SVFGT(0.923)PT(0.077)LETANK;SVFGT(1)PTLETANK ; 202.58 7.92E-21 511680000 1455160 1433540 851870 561850 1399140 1576340 1597810 1654550 1178360 1870920 TRUE FALSE FALSE 1353160.798 1319941.07 1181736.878 1308015.194 1223646.815 1381867.198 1198021.038 1277845.084 1280501.194 1402429.454 0.964869066 0.941181794 0.842635524 0.932678068 0.872519335 0.985338117 0.854246917 0.911165321 0.913059256 1 20.41949677 -8.370451497 4.655374871 0.999999991 0.911449673 0.261227195 0.043784681 47.05275898 590.2646467 0.04064432 0.010610785 4.26E-09 8.370451497 -0.088550318 SVFGTPTLETANKNHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDK ddPTM_HeLa_A485_30min_R1 1 SVFGTPTLETANKNHETDGGSAHGDDDDDGPHFEPVVPLPDK 42 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SVFGTPTLETANKNHETDGGS(1)AHGDDDDDGPHFEPVVPLPDK 188.51 1.28E-22 335970000 139210 258170 93241 115670 188340 282130 405960 532240 140560 156720 TRUE FALSE FALSE 170176.7842 288360.7357 127734.726 121988.7592 169588.2083 296901.8905 319223.3296 401707.3055 168769.1027 117652.5882 1.446434684 2.450951059 1.085694143 1.036855721 1.441432023 2.523547463 2.713270778 3.414351623 1.434469953 1 16.84417353 -6.258770582 24.70620665 2.399033886 1.497644621 0.177224115 0.730027612 283.5857833 2625281.41 0.244075357 0.233502949 5.51E-07 6.258770582 -0.901389265 SVFGTPTLETANKNHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_HeLa_A485_30min_R1 1 SVFGTPTLETANKNHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 46 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.001)VFGT(0.002)PT(0.009)LET(0.008)ANKNHET(0.032)DGGS(0.949)AHGDDDDDGPHFEPVVPLPDKIEVK 143.1 7.98E-12 191680000 116130 82266 48126 198360 126360 130400 219390 241820 75550 276730 TRUE FALSE FALSE 141962.7179 91886.29308 65929.81009 209195.9045 113779.1547 137227.5424 172515.5342 182513.2658 90712.19201 207746.3038 0.68334654 0.442300495 0.317357319 1.006977745 0.547683172 0.660553472 0.830414458 0.878539172 0.436648885 1 17.66446328 -12.92097952 0.054186235 2.188988986 4.20E-11 0.222653451 0.204213898 577.9733402 2.79458394 108.5967123 27.98197346 1.20E-13 12.92097952 -2.188988986 SVFSQSGNS(ph)R ddPTM_HeLa_A485_30min_R1 2 SVFSQSGNSR 10 0 G5EA36;P30260;P30260-2 G5EA36 CDC27 Cell division cycle protein 27 homolog 1 0 SVFSQSGNS(1)R;SVFSQSGNS(1)R ; 135.63 0.00010029 0 197022 242400 191558 207274 316620 207611 254228 277770 201146 271506 TRUE FALSE FALSE 240848.8642 270746.5714 262423.2756 218596.8538 285096.2011 218481.1909 199910.1109 209646.472 241514.1572 203824.5509 1.181647957 1.3283315 1.28749591 1.072475582 1.398733371 1.071908119 0.980795052 1.028563395 1.184912005 1 17.63696831 -6.413755523 8.139706009 1.047539273 1.249378702 0.523256277 0.095838111 0.242426989 16.32151823 0.033028227 0.029072625 3.86E-07 6.413755523 0.201839429 SVFTSSLFQMEPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SVFTSSLFQMEPSPR 15 0 Q2M1Z3 Q2M1Z3 ARHGAP31 Rho GTPase-activating protein 31 1 0 SVFTSSLFQMEPS(1)PR;SVFTSSLFQMEPS(1)PR ; 199.33 1.49E-16 0 62484 80268 73419 65060 99582 77142 93008 92036 64334 90442 TRUE FALSE FALSE 76383.35023 89654.64436 100579.7433 68614.06306 89667.26643 81181.03584 73136.08099 69464.02669 77245.24369 67896.47386 1.124997307 1.320460979 1.481369173 1.010568873 1.320646881 1.195659085 1.077170534 1.023087397 1.137691537 1 16.05104903 -6.682434356 3.138980311 1.058232232 1.255418116 0.358893031 0.121568911 0.28721878 5.685706969 0.051705211 0.037386276 2.08E-07 6.682434356 0.197185884 SVFTSSLFQMEPS(ph)PR ddPTM_HeLa_A486_30min_R1 1 SVFTSSLFQMEPSPR 15 0 Q2M1Z3 Q2M1Z3 ARHGAP31 Rho GTPase-activating protein 31 1 0 SVFTSSLFQMEPS(1)PR 200.58 2.72E-25 119790000 109570 124550 85993 50552 140970 106750 117230 96072 88298 110780 TRUE FALSE FALSE 101889.7088 114680.2044 119291.7926 117687.6108 123288.2281 93580.27035 87897.81407 74198.50284 95951.74173 83039.96694 1.226996019 1.381024206 1.436558768 1.417240578 1.484685419 1.126930487 1.058500109 0.893527606 1.155488679 1 16.34151825 -6.431785181 3.744120401 1.023646295 1.392169437 0.796863642 0.087359369 0.104825756 2.715366468 0.033083001 0.028205198 3.70E-07 6.431785181 0.368523142 SVFWASS(ph)PYR ddPTM_HeLa_A485_30min_R1 2 SVFWASSPYR 10 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 SVFWAS(0.001)S(0.999)PYR;SVFWAS(0.026)S(0.974)PYR ; 180.19 1.62E-09 415520000 630290 785150 712040 648620 920750 734200 826080 940830 623900 852030 TRUE FALSE FALSE 770495.836 876966.4626 975453.2265 684052.4682 829076.8971 772641.5767 649581.2595 710089.9673 749111.0073 639634.6015 1.204587485 1.371042875 1.525016352 1.069442564 1.296172682 1.20794212 1.015550532 1.110149397 1.171154602 1 19.28688846 -6.070248366 0.89812251 1.07952701 1.345598399 0.4297952 0.117980649 0.571624847 1.00695591 0.068018566 0.077076355 8.51E-07 6.070248366 0.266071388 SVFWASS(ph)PYR ddPTM_HeLa_A486_30min_R1 4 SVFWASSPYR 10 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 SVFWAS(0.008)S(0.992)PYR;SVFWAS(0.024)S(0.976)PYR;SVFWAS(0.022)S(0.978)PYR;SVFWAS(0.008)S(0.992)PYR ;;; 162.21 5.47E-07 1061800000 2119490 2432760 1996760 820570 2559030 2021080 2221590 2231910 1887360 2254610 TRUE FALSE FALSE 1970924.696 2239979.238 2769958.947 1910328.429 2238052.595 1771739.698 1665724.684 1723752.815 2050957.884 1690040.981 1.166199352 1.325399362 1.638989219 1.130344442 1.324259364 1.048341264 0.985612008 1.019947347 1.213555119 1 20.6886268 -6.121239111 1.861942832 1.046966204 1.34554837 0.450145092 0.142492927 0.320700783 2.205687928 0.056488459 0.057053284 7.56E-07 6.121239111 0.298582166 SVFWASS(ph)PYRR ddPTM_HeLa_A485_30min_R1 2 SVFWASSPYRR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 SVFWAS(0.005)S(0.995)PYRR;SVFWAS(0.007)S(0.993)PYRR ; 127.79 3.08E-05 703520000 467670 634790 614720 463320 799680 628590 727140 797240 524340 661820 TRUE FALSE FALSE 571701.5781 709023.1686 842130.5086 488629.9984 720061.0514 661502.0004 571780.5988 601715.64 629570.2285 496840.4539 1.150674374 1.427064087 1.6949717 0.983474664 1.449280238 1.33141735 1.15083342 1.211084233 1.26714768 1 18.92242312 -8.23255204 0.305124876 0.95278666 1.3909004 0.223265222 0.182326403 3.755774291 0.899868473 0.550885836 0.255031855 5.85E-09 8.23255204 0.43811374 SVFWASS(ph)PYRR ddPTM_HeLa_A486_30min_R1 2 SVFWASSPYRR 11 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 SVFWAS(0.014)S(0.986)PYRR;SVFWAS(0.005)S(0.995)PYRR ; 116.19 0.00019213 778430000 549730 645820 528630 244650 696970 453140 566340 564090 469030 539710 TRUE FALSE FALSE 511196.7658 594642.8712 733329.6932 569557.5639 609549.5236 397236.194 424635.7419 435659.021 509685.898 404563.1031 1.263577331 1.469839604 1.812646007 1.407833684 1.506685901 0.981889329 1.049615594 1.076862961 1.259842764 1 18.62600522 -6.253729088 24.75751552 1.076944404 1.504003741 0.672698207 0.145822693 318.9991852 1024297.303 0.050155865 0.049251724 5.58E-07 6.253729088 0.427059337 SVGDES(ph)WEQTQEGDVGALYHEQLALK ddPTM_HeLa_A485_30min_R1 1 SVGDESWEQTQEGDVGALYHEQLALK 26 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 0 S(0.054)VGDES(0.873)WEQT(0.069)QEGDVGALY(0.004)HEQLALK 53.895 0.025236 104280000 17473 16831 14339 22075 25309 20640 25229 26760 16879 29461 TRUE FALSE FALSE 21359.80857 18799.23904 19643.5928 23280.90135 22789.14709 21720.67848 19838.61805 20197.06804 20266.46048 22116.91489 0.965767996 0.849993733 0.888170565 1.05262879 1.030394484 0.982084463 0.896988488 0.91319554 0.916333068 1 14.43286254 -3.886937686 19.95634224 0.94613505 4.508499095 0.006728846 0.062949146 5282.020068 942355.1325 0.016775393 9256.884608 0.000129737 3.886937686 3.562364045 SVGDES(ph)WEQTQEGDVGALYHEQLALK ddPTM_HeLa_A486_30min_R1 2 SVGDESWEQTQEGDVGALYHEQLALK 26 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 0 SVGDES(0.998)WEQT(0.002)QEGDVGALYHEQLALK;SVGDES(1)WEQTQEGDVGALYHEQLALK ; 264.01 1.94E-62 306100000 95754 101682 65012 44290 98265 110544 116331 111857 90584 122596 TRUE FALSE FALSE 89042.13907 93624.348 90186.38748 103109.3583 85939.68742 96906.20521 87223.75338 86389.60292 98435.89405 91897.16363 0.968932397 1.018794752 0.981383798 1.12200806 0.93517236 1.054507031 0.949145218 0.940068219 1.07115269 1 16.48773271 -6.767506317 24.98994361 0.985097231 1.013625189 0.034814294 0.05795213 503.7278655 2074841.239 0.02295409 0.015926417 1.71E-07 6.767506317 0.028527957 SVGGDS(ph)DTEDMR ddPTM_HeLa_A485_30min_R1 3 SVGGDSDTEDMR 12 0 Q9UK61;Q9UK61-3;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61 FAM208A Protein FAM208A 1 0 SVGGDS(1)DTEDMR;SVGGDS(0.999)DT(0.001)EDMR;SVGGDS(1)DTEDMR ;; 277.24 9.74E-41 1517700000 1022270 1425040 1368960 1138870 1767240 1337430 1614280 1665180 1285970 1557370 TRUE FALSE FALSE 1249670.435 1591686.032 1875395.271 1201083.584 1591287.38 1407455.767 1269375.891 1256791.994 1544052.383 1169146.32 1.068874283 1.361408751 1.604072338 1.027316738 1.361067775 1.203832012 1.085728851 1.07496553 1.320666504 1 20.15702407 -6.513141707 5.257376914 1.127874925 1.292042243 0.172427324 0.168820546 0.32753407 28.3470141 0.063142025 0.051809601 3.07E-07 6.513141707 0.164167319 SVGGDS(ph)DTEDMR ddPTM_HeLa_A486_30min_R1 2 SVGGDSDTEDMR 12 0 Q9UK61;Q9UK61-3;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61 FAM208A Protein FAM208A 1 0 SVGGDS(0.992)DT(0.008)EDMR;SVGGDS(0.909)DT(0.091)EDMR ; 160.69 7.41E-07 786260000 773247 849788 724612 270106 1056180 864529 1024401 915888 789466 928679 TRUE FALSE FALSE 719046.3784 782447.704 1005201.172 628820.4184 923704.0559 757872.2019 768085.0348 707360.2961 857897.5485 696131.7337 1.03291711 1.12399373 1.443981252 0.903306641 1.326909852 1.088690782 1.103361616 1.016129939 1.232378165 1 19.40900082 SVGGS(ph)GGGSFGDNLVTR ddPTM_HeLa_A486_30min_R1 1 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVGGS(0.785)GGGS(0.215)FGDNLVTR 261.76 1.24E-51 1753500000 655070 651420 429070 335050 868050 772660 952560 958160 616890 956180 TRUE FALSE FALSE 609152.9758 599799.1068 595217.3949 780013.3325 759171.0748 677337.065 714219.4128 740007.8845 670362.5219 716746.3043 0.849886455 0.836835995 0.830443619 1.088269765 1.059190777 0.945016474 0.996474497 1.032454412 0.935285634 1 19.45110304 -5.245802896 24.93512319 1.008467118 0.838833397 0.756545974 0.043943515 391.2730156 623952.6259 0.012390292 0.021367529 5.68E-06 5.245802896 -0.16963372 SVGGSGGGS(ph)FGDNLVTR ddPTM_HeLa_A485_30min_R1 2 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.167)VGGS(0.254)GGGS(0.579)FGDNLVTR;S(0.002)VGGS(0.053)GGGS(0.945)FGDNLVTR ; 310.19 5.22E-79 4259100000 1067230 1242800 1327000 1533610 1744870 1581460 2156350 2184720 1070570 2013220 TRUE FALSE FALSE 1304631.632 1388134.649 1817912.521 1617387.231 1571144.616 1664262.8 1695628.207 1648913.994 1285423.579 1511361.305 0.863216246 0.918466448 1.202831193 1.070152601 1.039555936 1.101168063 1.121921146 1.091012447 0.850507139 1 20.52741716 -4.583132464 9.12112207 1.066178963 0.876881575 0.381756829 0.086853586 0.259180729 36.36336404 0.021861697 0.058157447 2.61E-05 4.583132464 -0.189297388 SVGGSGGGS(ph)FGDNLVTR ddPTM_HeLa_A486_30min_R1 2 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVGGS(0.005)GGGS(0.995)FGDNLVTR;SVGGS(0.002)GGGS(0.998)FGDNLVTR ; 303.13 8.09E-69 3839600000 1517340 1329140 895060 860290 1616140 1732080 2363830 2382400 1305160 2292590 TRUE FALSE FALSE 1410982.302 1223814.106 1241651.203 2002798.597 1413428.651 1518393.58 1772374.732 1839979.527 1418292.32 1718510.542 0.821049547 0.712136514 0.722515907 1.165427007 0.822473076 0.88355209 1.031343532 1.070682712 0.825303241 1 20.71272727 -5.224099498 24.98459156 0.96684989 0.747924158 0.477050437 0.105149805 490.8118979 328407.9383 0.028144275 0.048745869 5.97E-06 5.224099498 -0.218925731 SVGRPS(ph)PLASGR ddPTM_HeLa_A485_30min_R1 2 SVGRPSPLASGR 12 1 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 1 0 S(0.001)VGRPS(0.999)PLASGR;SVGRPS(0.999)PLASGR ; 81.148 0.0026785 1244970000 693730 442290 251120 1693780 464890 682590 894240 715740 480610 1407080 TRUE FALSE FALSE 848047.8452 494011.9681 344019.738 1786306.913 418603.9193 718329.3569 703178.3187 540203.6428 577064.0186 1056320.851 0.802831681 0.467672268 0.325677314 1.691064708 0.396284821 0.680029516 0.6656863 0.511401098 0.546296154 1 20.01061668 SVGRPS(ph)PLASGR ddPTM_HeLa_A486_30min_R1 2 SVGRPSPLASGR 12 1 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 1 0 S(0.002)VGRPS(0.984)PLAS(0.014)GR;S(0.003)VGRPS(0.997)PLASGR ; 94.569 0.00081452 1280770000 494770 495540 488550 123346 654060 511030 456980 455230 506170 447130 TRUE FALSE FALSE 460089.178 456271.6057 677729.6438 287155.7216 572021.6959 447984.3144 342638.7706 351584.0666 550045.2231 335165.7377 1.372721392 1.361331289 2.022073165 0.856757387 1.706683087 1.336605339 1.02229653 1.048985702 1.641114116 1 18.35451515 -6.52668308 23.94570546 1.181791097 1.462107461 0.147946661 0.323276147 133.1638513 838149.5542 0.118741767 0.092464421 2.97E-07 6.52668308 0.280316364 SVHIS(ph)TPEKEPCAPLTIPSIR ddPTM_HeLa_A485_30min_R1 3 SVHISTPEKEPCAPLTIPSIR 21 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.104)VHIS(0.448)T(0.448)PEKEPCAPLTIPSIR;S(0.017)VHIS(0.491)T(0.491)PEKEPCAPLTIPSIR;S(0.001)VHIS(0.535)T(0.464)PEKEPCAPLTIPSIR ;; 115.63 2.97E-05 1264780000 261039 486330 485040 162654 642040 424470 362274 483600 494350 196485 TRUE FALSE FALSE 319106.225 543202.063 664476.4802 171539.3762 578116.2433 446694.5928 284871.2004 364996.3417 593561.5106 147504.9055 2.163360085 3.682603375 4.50477547 1.162940144 3.91930181 3.028337201 1.931265942 2.474469174 4.024012004 1 17.17040341 -10.83412654 2.53710041 0.248376617 2.981673198 0.260086351 1.005831834 17675267.6 11801474.58 81016420.47 0.247486093 1.47E-11 10.83412654 2.733296581 SVHIS(ph)TPEKEPCAPLTIPSIR ddPTM_HeLa_A486_30min_R1 1 SVHISTPEKEPCAPLTIPSIR 21 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.004)VHIS(0.498)T(0.498)PEKEPCAPLTIPSIR 159.66 2.16E-11 298260000 161600 204590 241960 42931 300660 118200 103390 137420 192050 63722 TRUE FALSE FALSE 150272.6745 188377.5433 335653.3919 99945.53761 262948.4193 103617.6858 77520.72845 106132.4659 208697.0486 47765.59644 3.146044134 3.943791292 7.027095168 2.092416824 5.504975105 2.16929534 1.622940657 2.221943695 4.369191724 1 15.54368426 -6.281075375 24.32623457 2.312187135 4.344792825 0.329875414 1.472022219 717.2447971 888562.1188 0.507152707 0.447973824 5.24E-07 6.281075375 2.032605689 SVHIST(ph)PEKEPCAPLTIPSIR ddPTM_HeLa_A485_30min_R1 3 SVHISTPEKEPCAPLTIPSIR 21 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SVHIS(0.007)T(0.993)PEKEPCAPLTIPSIR;SVHIS(0.023)T(0.977)PEKEPCAPLTIPSIR;SVHIS(0.123)T(0.877)PEKEPCAPLTIPSIR ;; 197.54 2.58E-26 795420000 352366 651340 578630 129180 794960 464949 511890 596210 545390 252548 TRUE FALSE FALSE 430748.6011 727508.5471 792689.3158 136236.7763 715810.9911 489293.0107 402520.5197 449988.5627 654844.7704 189592.4314 2.271971502 3.837223573 4.181017723 0.718577083 3.77552514 2.58076236 2.123083273 2.373452143 3.453960506 1 17.53254185 -10.26707731 0.279980165 1.47E-31 3.034160116 0.218390546 0.993093041 29.67661568 1.787337805 26.6473819 1.272909349 5.41E-11 10.26707731 3.034160116 SVHIST(ph)PEKEPCAPLTIPSIR ddPTM_HeLa_A486_30min_R1 3 SVHISTPEKEPCAPLTIPSIR 21 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 SVHIS(0.018)T(0.982)PEKEPCAPLTIPSIR;SVHIS(0.167)T(0.833)PEKEPCAPLTIPSIR;SVHIS(0.023)T(0.976)PEKEPCAPLTIPSIR ;; 198.39 2.46E-26 513682000 389299 499300 438930 51894 647400 327166 351030 369496 453660 126827 TRUE FALSE FALSE 362011.1504 459733.6496 608895.451 120811.8546 566197.0552 286803.5853 263198.5812 285369.8268 492983.6141 95068.69369 3.807890236 4.835804845 6.404794547 1.270784839 5.955662513 3.016803683 2.768509495 3.001722394 5.185551572 1 16.53668272 -9.360870765 0.219873389 5.50E-14 4.804050397 0.253074449 1.519688762 16.36896932 1.135248592 20.20668261 3.848484087 4.36E-10 9.360870765 4.804050397 SVICDIS(ph)PLR ddPTM_HeLa_A485_30min_R1 3 SVICDISPLR 10 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 SVICDIS(1)PLR;SVICDIS(1)PLR;SVICDIS(1)PLR ;; 160.67 5.98E-07 462910000 813050 989260 1020210 838290 1293520 882130 1024360 1059540 870690 1096370 TRUE FALSE FALSE 993910.1675 1104945.352 1397628.133 884083.66 1164732.607 928316.9628 805497.1177 799686.1537 1045429.497 823065.1362 1.207571702 1.342476194 1.69807719 1.074135717 1.415115956 1.127877882 0.978655373 0.971595222 1.270166176 1 19.65064708 -6.392611388 4.276472924 1.052533179 1.35100264 0.407576536 0.168825167 0.23820915 7.164237731 0.06149027 0.053473726 4.05E-07 6.392611388 0.298469462 SVICDIS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 SVICDISPLR 10 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 SVICDIS(1)PLR 212.2 2.04E-14 167420000 393160 515370 417870 149890 535590 421030 446840 504520 410140 453840 TRUE FALSE FALSE 365601.5143 474530.2043 579680.4549 348951.495 468411.308 369087.5993 335035.9058 389651.8096 445691.2654 340195.51 1.074680598 1.394874977 1.703962686 1.025738097 1.376888566 1.084927897 0.984833415 1.145376109 1.310103315 1 18.37600457 -5.298418187 24.99224467 1.140651173 1.391543433 0.289890284 0.185185198 729.1854147 492820.7206 0.052763552 0.078263257 5.03E-06 5.298418187 0.250892259 SVIDLRPEDVVHES(ph)GSLGDR ddPTM_HeLa_A485_30min_R1 1 SVIDLRPEDVVHESGSLGDR 20 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 SVIDLRPEDVVHES(0.588)GS(0.412)LGDR 87.72 0.00034168 189320000 140010 261330 280610 74098 244660 189810 218880 208600 192540 168420 TRUE FALSE FALSE 171154.7415 291890.2702 384419.3162 78145.78611 220300.7913 199748.1581 172114.4999 157440.5229 231181.0119 126435.9935 1.353686847 2.308601072 3.040426269 0.618065979 1.742389846 1.579836188 1.361277711 1.24521917 1.828443036 1 16.9480477 -5.263030156 24.99981842 1.377267466 2.241674332 0.39640287 0.504512072 147.5176109 2318321.229 0.138728776 0.218745732 5.46E-06 5.263030156 0.864406866 SVIDLRPEDVVHESGS(ph)LGDR ddPTM_HeLa_A485_30min_R1 2 SVIDLRPEDVVHESGSLGDR 20 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 SVIDLRPEDVVHES(0.388)GS(0.612)LGDR;SVIDLRPEDVVHES(0.206)GS(0.794)LGDR ; 158.2 1.48E-10 442710000 341360 648670 665040 168653 665600 442260 488760 551740 488990 402240 TRUE FALSE FALSE 417294.3543 724526.3138 911065.9706 177866.0863 599330.5269 465416.0497 384332.4332 416424.8999 587125.8077 301968.9707 1.381911371 2.399340277 3.017084731 0.58902107 1.984742093 1.541271107 1.272754722 1.379032087 1.944324963 1 18.20404079 -5.257208926 24.99956315 1.42963493 2.279434879 0.359360654 0.53553302 408.9956168 2416921.829 0.144201804 0.238793068 5.53E-06 5.257208926 0.84979995 SVIDLRPEDVVHESGS(ph)LGDR ddPTM_HeLa_A486_30min_R1 2 SVIDLRPEDVVHESGSLGDR 20 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 SVIDLRPEDVVHES(0.209)GS(0.791)LGDR;SVIDLRPEDVVHES(0.249)GS(0.751)LGDR ; 151.91 6.88E-10 478650000 510940 519470 524430 19964.6 642580 335770 380750 406100 506110 192594 TRUE FALSE FALSE 475125.7445 478305.3053 727503.3407 46478.59776 561981.6246 294346.1113 285482.3228 313639.8951 549980.0223 144367.2088 3.291091851 3.313115972 5.039256121 0.321947055 3.892723487 2.038870971 1.977473452 2.172514781 3.80959102 1 17.13938356 -5.243212336 24.99880176 2.280039201 3.824350568 0.323951762 1.122314534 1050.385984 1440626.067 0.29006562 0.501202558 5.71E-06 5.243212336 1.544311367 SVIEPLPVT(ph)PTR ddPTM_HeLa_A486_30min_R1 1 SVIEPLPVTPTR 12 0 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 SVIEPLPVT(0.908)PT(0.092)R 151.66 4.56E-06 0 70200 75987 58464 19722 75670 65373 63742 63660 61911 69879 TRUE FALSE FALSE 65279.34251 69965.51338 81102.82652 45913.81269 66178.76301 57307.94392 47793.07741 49166.00769 67277.49533 52380.84356 1.246244582 1.33570803 1.548329905 0.876538245 1.263415373 1.09406302 0.912415191 0.938625733 1.284391215 1 15.67675167 -5.261148898 24.99999996 1.054869403 1.372655556 0.506682129 0.146469337 21.88218153 1883198.157 0.040576663 0.065038665 5.48E-06 5.261148898 0.317786153 SVILHLLSQLK ddPTM_HeLa_A485_30min_R1 1 SVILHLLSQLK 11 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 0 0 146.16 0.00042342 0 21386 22667 18882 17975 30465 18379 27685 26544 18258 30829 FALSE FALSE TRUE 26143.24192 25317.70847 25867.23755 18956.92873 27431.79763 19341.29602 21769.87358 20034.04238 21922.21313 23143.89767 1.129595468 1.093925874 1.117669889 0.819089723 1.185271298 0.83569744 0.940631258 0.865629578 0.947213535 1 14.49834423 -5.01560043 0.742033525 0.923823846 1.173144259 0.318817512 0.103563598 1.401700348 1.1326139 0.046621765 0.248412564 9.65E-06 5.01560043 0.249320413 SVIQQAEEKLHT(ph)PQKR ddPTM_HeLa_A485_30min_R1 1 SVIQQAEEKLHTPQKR 16 2 Q9NP74-3;Q9NP74-2;Q9NP74;S4R313 Q9NP74-3 PALMD Palmdelphin 1 0 SVIQQAEEKLHT(1)PQKR 93.776 0.00056653 236570000 59591 87549 53801 73895 176950 156590 260130 441950 84362 115470 TRUE FALSE FALSE 72846.81236 97787.09397 73704.22875 77931.69674 159332.2367 164788.8103 204551.1004 333561.0695 101292.6796 86685.45407 0.840357972 1.128068083 0.850249094 0.899016999 1.838050437 1.900997255 2.359693476 3.847947423 1.168508381 1 16.40350231 -5.971356873 1.88787985 2.278335573 0.918232153 0.32171662 0.744615308 0.348448924 2.517063522 0.269839925 0.302947951 1.07E-06 5.971356873 -1.36010342 SVISHSVTSDMQTIEQES(ph)PIMAKPR ddPTM_HeLa_A485_30min_R1 2 SVISHSVTSDMQTIEQESPIMAKPR 25 1 H0Y6A0;Q9NP61-2;Q9NP61 H0Y6A0 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 1 0 SVISHSVTSDMQTIEQES(1)PIMAKPR;SVISHSVTSDMQTIEQES(1)PIMAKPR ; 479.85 6.14E-276 2272600000 499180 694770 584890 391800 869630 721850 867500 958500 693930 751150 TRUE FALSE FALSE 610220.8688 776017.3078 801265.1503 413203.0419 783046.5837 759644.9498 682151.5382 723426.3721 833195.3859 563902.1289 1.082139679 1.376156017 1.420929465 0.732756662 1.388621436 1.347121975 1.209698462 1.282893494 1.477553184 1 19.10508526 SVISHSVTSDMQTIEQES(ph)PIMAKPR ddPTM_HeLa_A486_30min_R1 3 SVISHSVTSDMQTIEQESPIMAKPR 25 1 H0Y6A0;Q9NP61-2;Q9NP61 H0Y6A0 ARFGAP3 ADP-ribosylation factor GTPase-activating protein 3 1 0 SVISHSVTSDMQTIEQES(1)PIMAKPR;SVISHSVTSDMQTIEQES(1)PIMAKPR;SVISHSVTSDMQT(0.002)IEQES(0.998)PIMAKPR ;; 455.31 2.21E-230 2250410000 1102410 1044220 738300 77708 1119790 879604 1044170 1084820 858157 836390 TRUE FALSE FALSE 1025136.752 961472.2042 1024189.532 180908.1511 979335.4966 771087.4016 782907.6219 837830.1675 932542.7397 626952.5 1.635110717 1.533564671 1.633599886 0.288551607 1.562056929 1.229897642 1.248751097 1.3363535 1.487421678 1 19.25799662 SVKHDSIPAADTFEDLS(ph)DVEGGGSEPTQR ddPTM_HeLa_A485_30min_R1 2 SVKHDSIPAADTFEDLSDVEGGGSEPTQR 29 1 O95671;O95671-2;O95671-3 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 SVKHDSIPAADT(0.004)FEDLS(0.996)DVEGGGSEPTQR;S(0.005)VKHDS(0.005)IPAADT(0.015)FEDLS(0.974)DVEGGGS(0.002)EPTQR ; 118.2 4.97E-05 303090000 58042 242530 159696 34342 203451 145109 153244 269440 110982 47029 TRUE FALSE FALSE 70953.24266 270891.7738 218774.1959 36218.0165 183194.7041 152706.6829 120502.1675 203359.4175 133255.0694 35305.5358 2.009691711 7.672784667 6.196597528 1.025845258 5.188837951 4.325290054 3.413123885 5.759986724 3.774339247 1 15.10760679 SVLFVCLGNICR ddPTM_HeLa_A485_30min_R1 2 SVLFVCLGNICR 12 0 F2Z2Q9;G5E9R5;D3YTI2;P24666-4;P24666-3;P24666-2;P24666 F2Z2Q9 ACP1 Low molecular weight phosphotyrosine protein phosphatase 0 0 ; ; 258.17 5.77E-39 133231000 82507 86119 102169 83944 121482 91099 123768 125794 59999 125531 FALSE FALSE TRUE 100860.3975 96189.86791 139965.5647 88529.64816 109386.8255 95868.80277 97323.95571 94942.82426 72040.24896 94238.43193 1.070268206 1.020707433 1.485228074 0.939421915 1.160745391 1.017300488 1.032741672 1.007474576 0.764446601 1 16.52402791 -6.786885249 0.947487759 0.905013343 1.147276646 0.274974517 0.148070245 0.76392442 1.34031477 0.111756796 0.062751368 1.63E-07 6.786885249 0.242263303 SVLFVCLGNICR ddPTM_HeLa_A486_30min_R1 2 SVLFVCLGNICR 12 0 F2Z2Q9;G5E9R5;D3YTI2;P24666-4;P24666-3;P24666-2;P24666 F2Z2Q9 ACP1 Low molecular weight phosphotyrosine protein phosphatase 0 0 ; ; 261.6 3.60E-39 140305000 78728 110608 96931 51152 129147 113561 131520 129203 100292 129528 FALSE FALSE TRUE 73209.57375 101843.0193 134465.2791 119084.4411 112948.179 99550.99842 98612.30492 99786.29738 108985.3913 97093.34571 0.754012267 1.048918631 1.384907257 1.226494362 1.163294747 1.025312267 1.015644318 1.027735698 1.122480542 1 16.5670848 -6.268219532 23.43843767 1.03855615 1.132955668 0.054406427 0.152694858 700.5672125 2421792.806 0.057262482 0.051754591 5.39E-07 6.268219532 0.094399519 SVLISLK ddPTM_HeLa_A485_30min_R1 2 SVLISLK 7 0 P09496-2;P09496-4;P09496-3;P09496;C9J8P9;P09496-5 P09496-2 CLTA Clathrin light chain A 0 0 ; ; 157.52 0.0024298 172333000 428870 508110 422640 488920 646560 526190 660350 760380 456070 684360 FALSE FALSE TRUE 524270.6519 567529.0445 578992.1235 515628.4616 582186.2162 553740.4948 519260.8279 573895.6128 547599.0657 513761.6467 1.020455021 1.104654363 1.12696642 1.003633621 1.133183491 1.077815945 1.01070376 1.117046429 1.065862096 1 18.97073967 -10.82561211 2.040321275 0.966891539 1.075146116 0.186333904 0.045859942 2368308.32 1155964.158 383835.8733 0.011560382 1.49E-11 10.82561211 0.108254578 SVLISLK ddPTM_HeLa_A486_30min_R1 2 SVLISLK 7 0 P09496-2;P09496-4;P09496-3;P09496;C9J8P9;P09496-5 P09496-2 CLTA Clathrin light chain A 0 0 ; ; 141.78 0.0036983 162838000 472340 469720 287350 154997 495120 466140 520910 515470 378920 542790 FALSE FALSE TRUE 439231.4052 432497.6765 398619.6155 360840.8491 433017.4328 408632.3862 390572.8084 398108.7336 411765.0907 406871.851 1.079532546 1.062982547 0.979717851 0.886866094 1.064259992 1.004327002 0.959940599 0.978462218 1.012026489 1 18.63421495 -4.727906203 5.637440271 0.983855218 1.073600129 0.394013933 0.042484579 0.176733993 14.72416816 0.011169558 0.02927522 1.87E-05 4.727906203 0.089744911 SVLISLK(ac)QAPLVH ddPTM_HeLa_A485_30min_R1 2 SVLISLKQAPLVH 13 1 P09496-2;P09496-4;P09496-3;P09496;C9J8P9;P09496-5 P09496-2 CLTA Clathrin light chain A 0 1 ; SVLISLK(1)QAPLVH;SVLISLK(1)QAPLVH 218.11 1.61E-20 127845000 73029 104175 95489 73315 118076 90445 117009 132940 91403 113976 FALSE TRUE FALSE 89274.0491 116357.36 130814.3547 77320.01281 106319.9389 95180.56035 92009.07127 100336.2566 109746.7437 85563.88077 1.043361384 1.359888764 1.528850182 0.903652477 1.242579671 1.112391812 1.075326066 1.172647333 1.282629337 1 16.3847143 -5.260190612 24.99999312 1.123776046 1.315618959 0.26170449 0.151505965 159.3361585 3189834.192 0.041402521 0.066872601 5.49E-06 5.260190612 0.191842914 SVLISLK(ac)QAPLVH ddPTM_HeLa_A486_30min_R1 2 SVLISLKQAPLVH 13 1 P09496-2;P09496-4;P09496-3;P09496;C9J8P9;P09496-5 P09496-2 CLTA Clathrin light chain A 0 1 ; SVLISLK(1)QAPLVH;SVLISLK(1)QAPLVH 172.27 1.58E-06 122837000 99997 108279 89486 26069 121516 95628 107804 116393 91936 104339 FALSE TRUE FALSE 92987.72669 99698.57769 124137.3757 60689.94945 106274.3302 83830.38963 80830.29897 89892.85474 99905.0865 78211.83527 1.188921426 1.274724949 1.587194256 0.77596887 1.358801131 1.071837649 1.033479124 1.149351047 1.277365327 1 16.25509932 -5.24760209 24.99416514 1.108911583 1.342724639 0.303337848 0.176147322 1058.986261 1912834.003 0.046244787 0.07956455 5.65E-06 5.24760209 0.233813056 SVLT(ph)PLRGDVASCNTQVAEKPVLTAVPGITR ddPTM_HeLa_A485_30min_R1 1 SVLTPLRGDVASCNTQVAEKPVLTAVPGITR 31 2 O75152;E9PQ61 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 S(0.154)VLT(0.846)PLRGDVASCNTQVAEKPVLTAVPGITR 106.19 0.00011821 267070000 28255 22316 22513 25848 42661 27335 37115 38592 24682 30818 TRUE FALSE FALSE 34540.22727 24925.66208 30841.49554 27260.01079 38413.52105 28766.21833 29185.07705 29127.25149 29635.451 23135.63976 1.492944549 1.077370772 1.33307295 1.178269158 1.660361306 1.243372503 1.261476983 1.258977568 1.280943657 1 14.49782937 -8.860502482 0.694687638 0.990281525 1.318118777 0.276921628 0.15323938 4.933767732 2.936971195 0.278804333 0.056023666 1.38E-09 8.860502482 0.327837252 SVNEILGLAES(ph)SPNEPK ddPTM_HeLa_A485_30min_R1 2 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 SVNEILGLAES(0.747)S(0.253)PNEPK;SVNEILGLAES(0.5)S(0.5)PNEPK ; 127.83 1.59E-05 401530000 128666 147201 126720 190150 201038 144379 217407 222239 142916 269212 TRUE FALSE FALSE 157287.3078 164414.8765 173599.0013 200537.413 181021.9508 151938.4612 170956.2184 167734.5368 171597.9303 202102.4029 0.778255506 0.813522621 0.858965548 0.992256451 0.895694204 0.751789484 0.845889094 0.829948256 0.849064276 1 17.62472695 -11.25658459 1.925108606 1.473906244 0.848065325 0.35379192 0.062328177 6932654.759 1032693.205 14273708.27 0.017050502 5.54E-12 11.25658459 -0.625840919 SVNEILGLAES(ph)SPNEPK ddPTM_HeLa_A486_30min_R1 2 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 SVNEILGLAES(0.734)S(0.266)PNEPK;SVNEILGLAES(0.781)S(0.219)PNEPK ; 157.91 1.02E-08 420290000 208459 197866 127978 115941 218615 224440 257425 251125 161255 329674 TRUE FALSE FALSE 193847.1006 182186.3775 177534.509 269916.5073 191194.2682 196750.8747 193014.5422 193949.3195 175232.7132 247121.4846 0.784420266 0.737234069 0.718409851 1.092242173 0.773685333 0.796170657 0.781051241 0.784833904 0.709095421 1 17.91486092 -11.22894845 2.231888564 1.647242457 0.800442823 0.25822456 0.102872048 6119344.927 1263787.845 19933798.24 0.027974489 5.90E-12 11.22894845 -0.846799634 SVNEILGLAESS(ph)PNEPK ddPTM_HeLa_A485_30min_R1 3 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 SVNEILGLAES(0.001)S(0.999)PNEPK;SVNEILGLAES(0.248)S(0.752)PNEPK;SVNEILGLAES(0.055)S(0.945)PNEPK ;; 133.93 7.66E-06 421870000 136504 137231 105462 185380 180833 152349 211591 228952 131631 251257 TRUE FALSE FALSE 166868.8439 153278.9717 144476.7824 195506.84 162828.6316 160325.7581 166382.8543 172801.163 158048.1343 188623.2539 0.884667401 0.812619698 0.765954247 1.036493836 0.86324792 0.849978752 0.882090892 0.916118026 0.837903763 1 17.52514802 -14 0.211976883 1.603162972 0.855558044 0.237403606 0.067913446 226.8133152 2.263469785 58.39320524 0.145323615 1.00E-14 14 -0.747604928 SVNEILGLAESS(ph)PNEPK ddPTM_HeLa_A486_30min_R1 1 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 SVNEILGLAES(0.017)S(0.983)PNEPK 120.99 4.27E-05 222590000 152380 147130 90952 92066 147480 169350 219340 197790 121780 253210 TRUE FALSE FALSE 141698.9489 135470.883 126171.0502 214334.3008 128981.6832 148457.3188 164458.8121 152757.5347 132335.9885 189804.5679 0.746551837 0.713738792 0.664741906 1.129236789 0.679549943 0.78215883 0.866463931 0.804814849 0.697222358 1 17.53415519 -11.50328358 2.079546788 3.327342064 0.791004202 0.197162494 0.128635013 4998304.03 307481.7725 54954028.88 0.032899521 3.14E-12 11.50328358 -2.536337862 SVNFSLT(ph)PNEIK ddPTM_HeLa_A485_30min_R1 4 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SVNFS(0.002)LT(0.998)PNEIK;SVNFSLT(1)PNEIK;SVNFS(0.001)LT(0.999)PNEIK;SVNFSLT(1)PNEIK ;;; 255.72 1.44E-32 1608360000 3060150 2839100 2295260 4118680 3770020 2980190 4274260 3847890 2817520 5391480 TRUE FALSE FALSE 3740869.81 3171108.048 3144372.188 4343673.059 3394663.571 3136228.14 3361029.434 2904188.944 3382970.42 4047483.259 0.924245901 0.783476508 0.776870956 1.073178759 0.838709725 0.774858829 0.830399836 0.717529575 0.835820732 1 21.94859368 -5.989997551 24.98898526 0.813184687 0.884096991 0.052923523 0.102622239 536.2319228 1339651.216 0.031752053 0.035962571 1.02E-06 5.989997551 0.070912305 SVNFSLT(ph)PNEIK ddPTM_HeLa_A486_30min_R1 6 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SVNFS(0.055)LT(0.945)PNEIK;SVNFS(0.041)LT(0.959)PNEIK;SVNFSLT(1)PNEIK;SVNFS(0.002)LT(0.998)PNEIK;SVNFSLT(1)PNEIK;SVNFSLT(1)PNEIK ;;;;; 265.43 5.21E-33 2187110000 3421470 3478100 1914690 1671200 3174660 3853630 4638420 4348940 2745130 4771030 TRUE FALSE FALSE 3181642.621 3202482.689 2656109.245 3890638.058 2776464.54 3378208.311 3477838.256 3358781.299 2983080.079 3576333.034 0.889638239 0.895465455 0.742690689 1.087884719 0.776343957 0.944601154 0.972459282 0.93916905 0.834116971 1 21.77004966 -5.233791171 24.99733437 0.92901251 0.847884905 0.183880857 0.089386428 1421.612284 1285308.176 0.023252429 0.040262311 5.84E-06 5.233791171 -0.081127605 SVNGGPGS(ph)PDLAR ddPTM_HeLa_A485_30min_R1 5 SVNGGPGSPDLAR 13 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR ;;;; 160.64 9.73E-12 4248870000 3786570 4385660 2634010 3816820 3200440 4021110 5128230 4849370 3253310 7188560 TRUE FALSE FALSE 4628879.433 4898524.787 3608439.909 4025323.212 2881792.956 4231649.102 4032541.767 3660054.404 3906219.476 5396584.288 0.857742451 0.907708381 0.668652562 0.745902037 0.53400314 0.784134719 0.747239652 0.678216851 0.723831829 1 22.36361513 -9.66437269 16.56098153 0.999999958 0.735533888 0.39088583 0.097824071 0 0 0.099474991 0.024126229 2.17E-10 9.66437269 -0.26446607 SVNGGPGS(ph)PDLAR ddPTM_HeLa_A486_30min_R1 4 SVNGGPGSPDLAR 13 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR;SVNGGPGS(1)PDLAR ;;; 183.73 3.68E-17 4113240000 3365560 3375050 2779560 809492 4478490 3768470 3211760 3348330 3883260 4802270 TRUE FALSE FALSE 3129651.624 3107598.746 3855880.071 1884538.285 3916756.024 3303554.486 2408143.677 2585988.353 4219864.103 3599750.334 0.869407968 0.863281744 1.071152084 0.523519164 1.088063243 0.917717669 0.668975194 0.718379919 1.172265772 1 21.77946542 -7.767009594 24.99987321 1.086132927 0.843139999 0.255873137 0.167788028 203.0042592 911063.2793 0.144261291 0.041395632 1.71E-08 7.767009594 -0.242992928 SVPGTTSSPLVGDIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SVPGTTSSPLVGDISPK 17 0 Q9UQR0;H0Y6S1;B4DRC2;Q9UQR0-2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK ; 231.86 6.14E-35 390910000 211232 212894 161017 355000 278421 226244 407240 383680 203880 503180 TRUE FALSE FALSE 258219.8297 237790.1014 220583.8888 374392.7511 250700.4276 238089.786 320229.8472 289581.8784 244796.8459 377746.4863 0.6835797 0.629496527 0.583946898 0.99112173 0.663673751 0.630289876 0.847737461 0.766603764 0.648045329 1 18.52705881 -14 0.219398161 2.39293368 0.684190693 0.343052669 0.11713213 183.3205779 1.834356636 113.1173706 0.231457744 1.00E-14 14 -1.708742988 SVPGTTSSPLVGDIS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SVPGTTSSPLVGDISPK 17 0 Q9UQR0;H0Y6S1;B4DRC2;Q9UQR0-2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK ; 182.18 1.35E-17 437770000 195687 180354 74204 125800 169094 208077 277060 255740 155139 367310 TRUE FALSE FALSE 181970.3518 166062.0922 102937.7761 292868.7576 147884.6538 182406.5753 207736.6576 197513.5848 168586.5734 275333.1852 0.660909624 0.60313141 0.373866216 1.063688554 0.537111622 0.662493971 0.754491898 0.717362074 0.612300233 1 18.07081898 -14 0.211662469 2.588755719 0.621096813 0.266892199 0.166561004 202.6888434 2.022402553 137.0610305 0.343951676 1.00E-14 14 -1.967658906 SVPGYKVEEKS(ph)P ddPTM_HeLa_A485_30min_R1 2 SVPGYKVEEKSP 12 2 S5FZ81 S5FZ81 PHF10 1 0 SVPGYKVEEKS(1)P;SVPGYKVEEKS(1)P ; 77.222 0.0055934 504650000 426430 472850 309100 889990 1165440 872470 1697030 2274000 603390 1629950 TRUE FALSE FALSE 521287.8823 528145.6943 423448.9527 938607.9001 1049404.701 918151.1801 1334445.677 1716297.935 724484.8384 1223633.462 0.426016367 0.431620833 0.346058657 0.767066225 0.857613603 0.750348212 1.090559974 1.402624224 0.592076681 1 20.22274003 -5.6335276 1.045337321 1.02125703 0.37010401 0.584478265 0.204659436 0.368842149 0.844822892 0.087591075 0.156076346 2.33E-06 5.6335276 -0.65115302 SVPGYKVEEKS(ph)P ddPTM_HeLa_A486_30min_R1 2 SVPGYKVEEKSP 12 2 S5FZ81 S5FZ81 PHF10 1 0 SVPGYKVEEKS(1)P;SVPGYKVEEKS(1)P ; 94.569 0.001188 580710000 1106000 823860 467350 1106050 1437580 1338120 2462300 2403400 724410 2230900 TRUE FALSE FALSE 1028475.111 758574.3332 648320.4361 2574940.297 1257265.311 1173036.359 1846206.496 1856198.286 787202.4421 1672268.119 0.61501807 0.453620041 0.387689288 1.539789144 0.751832375 0.701464284 1.10401345 1.109988443 0.470739371 1 20.67337475 SVPHLQK ddPTM_HeLa_A485_30min_R1 3 SVPHLQK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;; ;; 138.37 0.00091229 787173000 1210410 1396160 867100 1261580 1364410 1586510 1936390 2119600 1364580 2180530 FALSE FALSE TRUE 1479661.529 1559428.767 1187876.373 1330496.921 1228564.55 1669577.21 1522664.458 1599764.777 1638438.689 1636964.001 0.903905967 0.952634735 0.725658214 0.81278325 0.750514091 1.019922985 0.930175897 0.977275478 1.000900868 1 20.64259116 -6.270791044 24.88728306 0.98076732 0.829309164 0.587833514 0.065482277 511.3793234 1360913.279 0.024474725 0.021870147 5.36E-07 6.270791044 -0.151458156 SVPHLQK ddPTM_HeLa_A486_30min_R1 4 SVPHLQK 7 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;; ;;; 104.45 0.012333 916971000 1618667.5 1847285.2 1290632 650301.8 3228506.4 1926906 2124413.6 2228237.2 1813796.8 2268423 FALSE FALSE TRUE 1505207.267 1700899.593 1790399.275 1513935.455 2823557.023 1689183.929 1592862.848 1720916.232 1971018.167 1700395.116 0.885210298 1.000296682 1.052931321 0.890343333 1.660529954 0.993406717 0.936760423 1.01206844 1.15915304 1 20.69743859 -4.569239655 1.345540791 1.101898418 0.867146402 0.092263083 0.204104418 2.064116818 4.992948845 0.063719332 0.572524531 2.70E-05 4.569239655 -0.234752017 SVPHLQK(ac)VFDR ddPTM_HeLa_A485_30min_R1 2 SVPHLQKVFDR 11 1 P07355;H0YN42;P07355-2;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 1 ; SVPHLQK(1)VFDR;SVPHLQK(1)VFDR 145.17 0.00021869 71110000 89014 123341 94883 105903 136184 126346 149986 156296 125385 176847 FALSE TRUE FALSE 108814.8572 137764.657 129984.1701 111688.2127 122625.0428 132961.2812 117940.2658 117964.1609 150548.6194 132762.2975 0.819621679 1.037679067 0.979074425 0.841264537 0.923643573 1.001498796 0.888356619 0.888536604 1.133971182 1 17.01848598 -7.754263514 24.99958742 1.066985604 0.927018091 0.39304774 0.071660199 150.598653 524675.178 0.04973664 0.017916979 1.76E-08 7.754263514 -0.139967513 SVPHLQK(ac)VFDR ddPTM_HeLa_A486_30min_R1 2 SVPHLQKVFDR 11 1 P07355;H0YN42;P07355-2;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 1 ; SVPHLQK(1)VFDR;SVPHLQK(1)VFDR 145.17 0.00021869 80463000 64590 81737 73668 22218 100792 82752 87494 91906 77181 92437 FALSE TRUE FALSE 60062.57454 75259.86244 102194.2225 51724.62684 88149.72751 72542.8996 65602.07578 70981.01009 83871.11122 69290.17354 0.86682673 1.086154913 1.474873236 0.746492961 1.27218223 1.04694354 0.946773149 1.024402256 1.21043298 1 16.08036315 -6.487472441 24.91885043 1.040210125 1.098311834 0.010779141 0.197259246 3320.955812 2337281.392 0.068514454 0.06039893 3.25E-07 6.487472441 0.058101709 SVPNT(ph)PLRPNQQSVVNSSFSELFVK ddPTM_HeLa_A485_30min_R1 1 SVPNTPLRPNQQSVVNSSFSELFVK 25 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 S(0.003)VPNT(0.991)PLRPNQQS(0.006)VVNSSFSELFVK 74.364 0.010239 67865000 20848 25774 14447 20276 25749 19356 31359 41075 17628 29599 TRUE FALSE FALSE 25485.56568 28788.0451 19791.54649 21383.62654 23185.33915 20369.45023 24658.89347 31001.29185 21165.77791 22220.51403 1.146938619 1.295561617 0.890688058 0.962337168 1.043420468 0.916695726 1.10973551 1.395165378 0.952533226 1 14.43960457 -9.507137164 13.52302102 0.999981397 1.080965625 0.022423959 0.15656323 0 0 0.157595352 0.038222487 3.11E-10 9.507137164 0.080984228 SVPTAYRVS(ph)R ddPTM_HeLa_A485_30min_R1 4 SVPTAYRVSR 10 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 SVPTAYRVS(1)R;SVPTAYRVS(1)R;SVPTAYRVS(1)R;SVPTAYRVS(1)R ;;; 187.57 4.40E-10 3294410000 1157840 1764440 1646210 1169770 1706270 1501750 1717990 1804010 1394950 1516010 TRUE FALSE FALSE 1415397.513 1970775.909 2255211.584 1233671.573 1536387.768 1580379.308 1350927.402 1361573.719 1674903.67 1138096.607 1.243653223 1.731642022 1.98156428 1.083977903 1.349962524 1.388616132 1.187005913 1.196360406 1.47167091 1 20.1181916 -5.274884235 24.99646648 1.25644693 1.660222082 0.436726916 0.214095684 713.3286323 1326207.984 0.059784663 0.08924545 5.31E-06 5.274884235 0.403775151 SVPTAYRVS(ph)R ddPTM_HeLa_A486_30min_R1 4 SVPTAYRVSR 10 1 Q12872-2;Q12872 Q12872-2 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 SVPTAYRVS(1)R;SVPTAYRVS(1)R;SVPTAYRVS(1)R;SVPTAYRVS(1)R ;;; 159.65 3.46E-07 2965770000 971340 1024870 774757 262991 904340 795940 900070 891030 873150 1028820 TRUE FALSE FALSE 903254.082 943655.5687 1074763.659 612256.3388 790909.2446 697745.0153 674862.966 688161.92 948835.345 771196.7755 1.17123685 1.223624889 1.393630904 0.793904174 1.025560881 0.904756137 0.875085306 0.892329872 1.230341432 1 19.55673949 -5.258707446 24.99574049 0.952652733 1.258910282 0.562920421 0.122024795 172.7060826 1580162.369 0.033078238 0.05412933 5.51E-06 5.258707446 0.306257549 SVPVNNLPERS(ph)PTDS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 2 0 SVPVNNLPERS(0.999)PT(0.001)DS(1)PR;SVPVNNLPERS(0.953)PT(0.048)DS(1)PR ; 131.59 1.27E-05 1196750000 449410 616100 597640 586090 750440 545270 648770 655860 581160 660280 TRUE FALSE FALSE 549379.7041 688147.5356 818731.9059 618106.6126 675723.5586 573819.4941 510154.9895 495009.3067 697793.4813 495684.3476 1.108325705 1.38827772 1.651720313 1.246976258 1.363213428 1.157630853 1.02919326 0.998638164 1.407737575 1 18.91906218 -6.312852235 3.492256541 1.106685155 1.366992946 0.324802979 0.168208727 0.291809554 7.25477288 0.062517788 0.05609802 4.87E-07 6.312852235 0.26030779 SVPVNNLPERS(ph)PTDS(ph)PR ddPTM_HeLa_A486_30min_R1 2 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 2 0 SVPVNNLPERS(0.998)PT(0.007)DS(0.995)PR;SVPVNNLPERS(0.995)PT(0.007)DS(0.999)PR ; 109.32 0.00018737 1207590000 807240 907600 665220 298890 828850 766420 812510 885870 659310 870540 TRUE FALSE FALSE 750656.6446 835678.4706 922810.9992 695831.0251 724887.9043 671866.8928 609211.4041 684176.7394 716459.5217 652551.1177 1.15034152 1.280632962 1.414158943 1.066324164 1.110852291 1.029600401 0.933584186 1.048464589 1.097936242 1 19.31573139 -5.382372325 6.466537896 1.038600161 1.280688589 0.684030455 0.075138387 0.141082212 6.884120088 0.022245967 0.033133658 4.15E-06 5.382372325 0.242088429 SVPVNNLPERS(ph)PTDSPR ddPTM_HeLa_A485_30min_R1 1 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 1 0 SVPVNNLPERS(0.973)PT(0.026)DS(0.001)PR 84.975 0.00073573 267200000 97946 111370 80473 87274 120940 114640 157210 196360 85655 126210 TRUE FALSE FALSE 119733.7498 124393.7527 110243.3115 92041.55763 108898.789 120642.3731 123620.7992 148202.4021 102845.1728 94748.16972 1.263705147 1.312888186 1.163540275 0.971433621 1.14934979 1.273295025 1.304730208 1.564171662 1.085458148 1 16.53181045 -6.3010309 6.745391028 1.285046115 1.168384632 0.020418547 0.163901445 0.562050701 75.34406235 0.058475847 0.052055551 5.00E-07 6.3010309 -0.116661483 SVQEGENPDDGVRGS(ph)PPEDYR ddPTM_HeLa_A485_30min_R1 2 SVQEGENPDDGVRGSPPEDYR 21 1 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 0 SVQEGENPDDGVRGS(1)PPEDYR;SVQEGENPDDGVRGS(1)PPEDYR ; 124.5 8.57E-07 1218260000 178671 246790 238900 201491 338230 255730 268800 348610 264780 333510 TRUE FALSE FALSE 218415.7475 275649.9437 327279.0515 212497.9431 304554.6336 269119.6274 211368.6841 263112.8509 317918.9173 250372.0948 0.872364581 1.100961127 1.30717064 0.848728543 1.216408058 1.074878682 0.84421822 1.050887285 1.269785746 1 17.93371425 -7.568498908 24.99210888 1.143374401 1.0441941 0.054659913 0.157237691 401.4948995 219944.2294 0.104277154 0.039413077 2.70E-08 7.568498908 -0.099180301 SVQFLIQHGFNFNQQYAQGIPYHK ddPTM_HeLa_A486_30min_R1 1 SVQFLIQHGFNFNQQYAQGIPYHK 24 0 Q96GM8;Q96GM8-2 Q96GM8 TOE1 Target of EGR1 protein 1 0 0 136.34 2.03E-12 9236500 10669 14257 12014 5785.8 20359 16234 19162 18569 14097 18490 FALSE FALSE TRUE 9921.158195 13127.2234 16666.14255 13469.6348 17805.38438 14231.21414 14367.46493 14341.24406 15318.93931 13859.98365 0.715813124 0.947131232 1.202464806 0.971836269 1.284661283 1.026784338 1.036614854 1.034723014 1.10526388 1 13.75863794 -4.394996921 3.185835207 1.083734358 0.706461858 0.59829803 0.091876292 0.179114213 2.963552169 0.022471215 0.136980956 4.03E-05 4.394996921 -0.3772725 SVRPTDSNVSPAIS(ph)IHEIGAVGATK ddPTM_HeLa_A486_30min_R1 1 SVRPTDSNVSPAISIHEIGAVGATK 25 1 A6NIT2;A6NMN0;P46020-3;P46020-2;P46020 A6NIT2 PHKA1 "Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform" 1 0 SVRPTDS(0.002)NVS(0.006)PAIS(0.991)IHEIGAVGATK 146.58 2.60E-09 241590000 287900 274310 171710 89287 267200 215660 260500 272030 186580 284120 TRUE FALSE FALSE 267719.6967 252572.6766 238200.7106 207864.6483 233685.2845 189054.0619 195320.1447 210094.7074 202752.9046 212974.5027 1.257050461 1.185929176 1.11844708 0.976007201 1.097245358 0.887684016 0.917105767 0.986478216 0.952005531 1 17.7003212 -4.83291223 0.824908927 0.953318681 1.316823386 0.802857329 0.051088738 0.513642878 0.463765861 0.020915299 0.147408972 1.47E-05 4.83291223 0.363504706 SVS(ph)ANPK ddPTM_HeLa_A485_30min_R1 2 SVSANPK 7 0 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 S(0.004)VS(0.996)ANPK;SVS(1)ANPK ; 83.783 0.0095389 265440000 655960 636730 454630 800730 573380 837310 703810 1000260 756910 990840 TRUE FALSE FALSE 801876.039 711190.0347 622816.5557 844471.8523 516292.2739 881150.2569 553435.2439 754944.6667 908814.8942 743841.8231 1.078019566 0.956103855 0.837297039 1.135284178 0.694088794 1.184593592 0.744022757 1.01492635 1.221785151 1 19.50463634 -7.528813357 24.83477152 1.11338039 0.944805211 0.145089218 0.158427099 257.1340734 1075996.757 0.096946912 0.036872611 2.96E-08 7.528813357 -0.168575179 SVS(ph)CDNVSK ddPTM_HeLa_A486_30min_R1 1 SVSCDNVSK 9 0 Q96CB8;A0A087WXN4 Q96CB8 INTS12 Integrator complex subunit 12 1 0 S(0.001)VS(0.999)CDNVSK 115.33 0.00068642 111510000 157340 151450 114780 92052 178610 174360 192610 196040 140460 259970 TRUE FALSE FALSE 146311.2785 139448.5504 159225.8899 214301.7081 156207.0683 152849.236 144416.9408 151405.9715 152635.1859 194871.8199 0.75080778 0.715591154 0.81708012 1.099705992 0.8015888 0.784357821 0.741086838 0.776951596 0.783259406 1 17.57216595 -11.40051579 2.041245134 2.246894604 0.810225018 0.242453137 0.101828416 4472667.112 360690.4432 25811368.7 0.028336006 3.98E-12 11.40051579 -1.436669586 SVS(ph)ENSLVAMDFSGQTGR ddPTM_HeLa_A486_30min_R1 1 SVSENSLVAMDFSGQTGR 18 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 S(0.035)VS(0.962)ENS(0.003)LVAMDFSGQTGR 112.55 9.10E-05 77646000 177980 198510 214330 65025 251970 167070 214270 184010 165390 196370 TRUE FALSE FALSE 165504.5211 182779.3446 297324.316 151381.4862 220365.5731 146458.602 160657.3797 142114.9399 179726.1384 147197.6738 1.124369134 1.241727127 2.019898197 1.028423087 1.497072388 0.994979052 1.091439664 0.965470012 1.220984909 1 17.16739535 -6.266356188 24.95188167 1.054720651 1.390251014 0.284325563 0.259819082 547.883485 2780396.468 0.089626014 0.081527904 5.42E-07 6.266356188 0.335530363 SVS(ph)GS(ph)PEPAAK ddPTM_HeLa_A485_30min_R1 2 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(0.055)VS(0.948)GS(0.998)PEPAAK;S(0.11)VS(0.89)GS(1)PEPAAK ; 152.4 1.08E-06 2163800000 3644830 3491460 2862010 4571800 4779600 4402610 5824400 5766600 3394060 6781600 TRUE FALSE FALSE 4455609.859 3899755.875 3920786.597 4821545.858 4303726.242 4633123.852 4579969.359 4352332.308 4075216.71 5091071.926 0.875181086 0.765998975 0.770129877 0.947059073 0.845347759 0.910048791 0.899608064 0.854895073 0.800463393 1 22.27953802 -5.248697882 24.97625414 0.886756924 0.799992877 0.322265125 0.059198929 923.4970928 1810263.316 0.01557934 0.02676194 5.64E-06 5.248697882 -0.086764047 SVS(ph)HGSNHTQKPDEQR ddPTM_HeLa_A485_30min_R1 2 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.292)VS(0.708)HGSNHTQKPDEQR;SVS(0.97)HGS(0.029)NHTQKPDEQR ; 213.03 3.04E-26 1147243000 272732 696424 646117 105102.7 784465 416913 513723 577718 578275 216131 TRUE FALSE FALSE 333400.2925 777864.7287 885142.5655 110844.1944 706360.9102 438741.92 403961.8843 436031.7547 694329.4882 162253.5193 2.054810854 4.794131629 5.455305804 0.683154331 4.353439686 2.704051794 2.489695669 2.687348518 4.279287693 1 17.30789025 -5.240307015 24.9886316 2.74272757 4.170687345 0.195694795 1.371816477 1375.982732 1627072.27 0.3582775 0.619753029 5.75E-06 5.240307015 1.427959774 SVS(ph)HGSNHTQKPDEQR ddPTM_HeLa_A486_30min_R1 3 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.309)VS(0.69)HGSNHTQKPDEQR;S(0.038)VS(0.956)HGS(0.006)NHTQKPDEQR;S(0.054)VS(0.917)HGS(0.03)NHTQKPDEQR ;; 224.89 3.66E-34 566362000 414564 453908 438723 10696.2 510549 206708 250712 258810 415447 67652.6 TRUE FALSE FALSE 385505.2044 417938.677 608608.295 24901.29416 446511.1837 181206.4686 187981.2058 199884.6128 451458.2805 50711.94862 7.601861394 8.24142413 12.00128001 0.491034063 8.804851636 3.573249965 3.706842489 3.941568373 8.902404518 1 15.63003809 -5.251465399 24.99990037 4.595265168 9.17751188 0.388957257 2.821993309 750.2914682 1880610.748 0.73328979 1.250950975 5.60E-06 5.251465399 4.582246712 SVS(ph)LRK ddPTM_HeLa_A485_30min_R1 4 SVSLRK 6 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.001)VS(0.999)LRK;S(0.009)VS(0.991)LRK;S(0.001)VS(0.999)LRK;SVS(1)LRK ;;; 91.853 0.0088864 5841530000 3039210 2887210 2333710 2988720 3565750 3399380 4695730 4864530 3003370 4366890 TRUE FALSE FALSE 3715271.779 3224844.094 3197046.443 3151986.206 3210731.41 3577366.28 3692448.925 3671496.39 3606118.81 3278304.69 1.133290567 0.983692609 0.975213333 0.961468352 0.979387737 1.091224465 1.126328781 1.11993751 1.099995013 1 21.64451852 -6.274761251 19.43397297 1.097420446 1.001085135 0.333718162 0.056007915 41.85669657 61058.74252 0.019609769 0.017479867 5.31E-07 6.274761251 -0.096335311 SVS(ph)LRK ddPTM_HeLa_A486_30min_R1 3 SVSLRK 6 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.003)VS(0.997)LRK;S(0.001)VS(0.999)LRK;SVS(1)LRK ;; 93.374 0.0085566 4340970000 2852440 2616520 1620950 1097170 2732280 2770090 3454510 3490760 2112860 2954880 TRUE FALSE FALSE 2652498.686 2409177.426 2248625.251 2554267.208 2389571.965 2428344.46 2590155.06 2695990.151 2296004.406 2214958.815 1.197538603 1.087684976 1.015199576 1.153189482 1.078833588 1.096338426 1.169391974 1.217173941 1.036590112 1 21.07884844 SVS(ph)PCSNVESR ddPTM_HeLa_A485_30min_R1 2 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.001)VS(0.998)PCS(0.001)NVESR;S(0.072)VS(0.928)PCSNVESR ; 151.68 5.63E-07 1107680000 1518240 1444250 1188310 2316380 1775320 1496390 2185870 2094940 1449190 3210800 TRUE FALSE FALSE 1855967.25 1613142.474 1627915.319 2442917.974 1598562.907 1574738.667 1718841.018 1581152.68 1740029.14 2410406.65 0.76998097 0.6692408 0.675369577 1.0134879 0.663192207 0.653308298 0.713091717 0.655969266 0.721881986 1 21.20084513 -9.484777543 8.5682667 1.000000043 0.725004365 0.391895803 0.102321751 0 0 0.101331981 0.024576615 3.28E-10 9.484777543 -0.274995679 SVS(ph)PCSNVESR ddPTM_HeLa_A486_30min_R1 2 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.031)VS(0.946)PCS(0.023)NVESR;S(0.015)VS(0.985)PCSNVESR ; 134.39 2.77E-05 1009770000 1830580 1605740 1267940 806720 1856270 2327980 2376200 2195520 1755500 2647410 TRUE FALSE FALSE 1702265.795 1478495.314 1758920.325 1878084.929 1623439.308 2040777.497 1781649.627 1695648.024 1907668.153 1984481.304 0.857788779 0.745028593 0.886337564 0.946385801 0.818067323 1.028368215 0.897791087 0.854454018 0.961293084 1 20.92033054 -1 0.180564055 0.983313052 0.19989478 0.345637509 0.066293379 66.35933507 0.748441895 0.15074166 14.28243597 0.1 1 -0.783418272 SVS(ph)PER ddPTM_HeLa_A485_30min_R1 1 SVSPER 6 0 Q14966-3;Q14966;Q14966-2;Q14966-6;Q14966-4;A0A096LPB4;A0A096LPI0;A0A096LNQ0;A0A096LNR2;A0A096LNX0 Q14966-3 ZNF638 Zinc finger protein 638 1 0 S(0.071)VS(0.929)PER 69.984 0.028621 460720000 437620 506970 387670 354230 408680 678380 646060 878150 555590 638760 TRUE FALSE FALSE 534967.0592 566255.7314 531085.2653 373580.6879 367990.3842 713898.9278 508024.0032 662782.3356 667091.8168 479528.8875 1.11560966 1.180858435 1.107514644 0.779057733 0.767399825 1.488750618 1.059423147 1.382153094 1.391140001 1 18.8712582 -6.263267091 24.99828425 1.275373544 0.99548621 0.346548494 0.187884623 203.255428 2779985.667 0.067176234 0.062337599 5.45E-07 6.263267091 -0.279887334 SVS(ph)PESNDSISEELNHFKPIVCS(ph)PCTPPK ddPTM_HeLa_A486_30min_R1 1 SVSPESNDSISEELNHFKPIVCSPCTPPK 29 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 2 0 S(0.04)VS(0.957)PES(0.001)NDS(0.001)IS(0.001)EELNHFKPIVCS(0.919)PCT(0.08)PPK 145.62 8.64E-09 188510000 74892 97092 48818 43068 74750 102200 139410 121350 80656 117640 TRUE FALSE FALSE 69642.45754 89398.07632 67721.63699 100264.4805 65374.15798 89591.60309 104528.1435 93721.25405 87647.32702 88182.17829 0.789756603 1.013788478 0.767974191 1.137015239 0.741353403 1.015983103 1.185365858 1.062814005 0.993934701 1 16.42819949 -6.509960549 24.84937109 1.070750483 0.9012889 0.307752707 0.12170483 684.4502382 1316609.346 0.041382817 0.034805507 3.09E-07 6.509960549 -0.169461584 SVS(ph)PESNDSISEELNHFKPIVCSPCT(ph)PPK ddPTM_HeLa_A486_30min_R1 1 SVSPESNDSISEELNHFKPIVCSPCTPPK 29 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 2 0 S(0.441)VS(0.538)PES(0.005)NDS(0.007)IS(0.01)EELNHFKPIVCS(0.01)PCT(0.99)PPK 100.28 0.016922 116940000 55014 71670 35495 30365 62541 88386 93318 90082 61952 94805 TRUE FALSE FALSE 51157.80269 65990.60818 49239.61459 70691.25456 54696.52461 77481.83396 69968.84938 69572.29508 67322.04924 71065.21092 0.719871257 0.928592307 0.692879314 0.994737842 0.769666675 1.090292042 0.984572458 0.978992311 0.94732779 1 16.11685586 -5.867230481 1.264571091 0.993052967 0.804473047 0.411918083 0.097854112 0.441752257 1.485491019 0.038405693 0.049586525 1.36E-06 5.867230481 -0.18857992 SVS(ph)PESNDSISEELNHFKPIVCSPCTPPK ddPTM_HeLa_A485_30min_R1 2 SVSPESNDSISEELNHFKPIVCSPCTPPK 29 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 SVS(1)PESNDSISEELNHFKPIVCSPCTPPK;S(0.004)VS(0.996)PESNDSISEELNHFKPIVCSPCTPPK ; 327.69 7.71E-127 612660000 175379 159702 131874 202896 221190 207241 277450 309680 178296 292400 TRUE FALSE FALSE 214391.4535 178377.7597 180659.6803 213979.6947 199167.547 218091.8183 218170.5409 233730.4944 214078.3718 219510.0612 0.976681671 0.812617694 0.823013211 0.974805863 0.907327645 0.993539053 0.993897682 1.064782603 0.975255396 1 17.74392754 -6.014891741 1.129333831 1.015701865 0.873025957 0.500052109 0.053957914 0.376082324 1.013796605 0.025335626 0.02892052 9.66E-07 6.014891741 -0.142675907 SVS(ph)PESNDSISEELNHFKPIVCSPCTPPK ddPTM_HeLa_A486_30min_R1 1 SVSPESNDSISEELNHFKPIVCSPCTPPK 29 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 SVS(1)PESNDSISEELNHFKPIVCSPCTPPK 363.59 4.68E-167 220810000 70124 69493 33305 26586 66240 68262 84524 80591 56642 66007 TRUE FALSE FALSE 65208.66972 63986.12159 46201.58794 61893.55158 57931.56154 59840.52848 63375.2012 62242.18859 61551.77417 49478.41757 1.317921488 1.293212773 0.933772546 1.250920192 1.170845075 1.209426886 1.280865563 1.257966436 1.244012586 1 15.59451174 -10.21166871 4.669555102 0.999955421 1.213936474 0.285958219 0.103032594 4.89E-05 8.25E-06 0.101941065 0.024719195 6.14E-11 10.21166871 0.213981052 SVS(ph)PLLSTHVLGK ddPTM_HeLa_A485_30min_R1 1 SVSPLLSTHVLGK 13 0 Q96H12;X6RL08;X6R907;Q96H12-2 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 0 S(0.232)VS(0.768)PLLSTHVLGK 178.03 1.62E-13 605600000 836980 1133800 994590 564190 1448000 1108100 1449700 1729800 1053500 1105000 TRUE FALSE FALSE 1023163.313 1266388.047 1362530.229 595010.2711 1303832.036 1166118.403 1139959.752 1305563.838 1264927.787 829543.836 1.233404757 1.526607748 1.642505399 0.717274055 1.571745795 1.405734516 1.374200738 1.57383345 1.52484743 1 19.66195869 SVS(ph)PLLSTHVLGK ddPTM_HeLa_A486_30min_R1 1 SVSPLLSTHVLGK 13 0 Q96H12;X6RL08;X6R907;Q96H12-2 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 0 S(0.196)VS(0.803)PLLS(0.001)THVLGK 173.03 2.16E-12 806500000 1794800 2164800 1728500 85783 2203700 1726000 2029400 2020200 2079600 1220600 TRUE FALSE FALSE 1668993.788 1993253.364 2397821.491 199707.1592 1927291.397 1513063.669 1521622.655 1560244.561 2259861.402 914953.8152 1.824129 2.178528939 2.620702216 0.218270208 2.106435719 1.653704967 1.663059523 1.705271386 2.469918552 1 19.8033394 SVS(ph)PLRPETEARPPSR ddPTM_HeLa_A486_30min_R1 1 SVSPLRPETEARPPSR 16 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.003)VS(0.959)PLRPET(0.037)EARPPSR 79.461 0.0030846 912000000 1011000 944520 676130 675310 1230000 1191400 1654000 1620800 768050 1682000 TRUE FALSE FALSE 940134.1208 869672.7953 937945.6434 1572155.808 1075721.931 1044417.181 1240151.706 1251779.222 834625.1924 1260816.252 0.745655142 0.689769658 0.743919379 1.246934917 0.853194848 0.828365894 0.983610184 0.992832397 0.661972108 1 20.26592661 -5.034506281 24.99950485 0.936522656 0.717495193 0.319504058 0.141899354 673.7083036 488095.5125 0.037979725 0.065827815 9.24E-06 5.034506281 -0.219027463 SVS(ph)PLVWCR ddPTM_HeLa_A485_30min_R1 3 SVSPLVWCR 9 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 SVS(1)PLVWCR;S(0.004)VS(0.996)PLVWCR;S(0.072)VS(0.928)PLVWCR ;; 169.65 3.16E-09 312801000 550646 648170 649070 550586 941720 614930 724580 806020 624248 769050 TRUE FALSE FALSE 673135.303 723967.8432 889188.0031 580663.119 847959.0502 647126.7839 569767.5637 608342.3312 749528.8477 577339.9883 1.165925307 1.253971417 1.540146224 1.005755934 1.468734311 1.120876428 0.986883942 1.053698589 1.298245164 1 19.13906163 -6.495833265 24.00099766 1.084138702 1.284654236 0.273380145 0.159777932 589.8817894 523480.3403 0.054453879 0.047868445 3.19E-07 6.495833265 0.200515535 SVS(ph)PLVWCR ddPTM_HeLa_A486_30min_R1 2 SVSPLVWCR 9 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 SVS(1)PLVWCR;S(0.002)VS(0.998)PLVWCR ; 199.17 9.81E-10 441385000 360402 436167 349802 159648 516509 415017 435483 474717 346651 405562 TRUE FALSE FALSE 335139.6809 401603.5384 485254.7024 371668.6122 451723.625 363816.4221 326520.5473 366634.3021 376698.9878 304006.6354 1.102409099 1.321035437 1.596197733 1.222567434 1.485900544 1.196738425 1.074057304 1.206007565 1.239114361 1 18.21374329 -6.461723542 7.912060029 1.145252204 1.350884401 0.348469312 0.140066702 0.375463032 44.53731077 0.049479828 0.043386723 3.45E-07 6.461723542 0.205632197 SVS(ph)PPPKR ddPTM_HeLa_A486_30min_R1 1 SVSPPPKR 8 1 Q13247 Q13247 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.165)VS(0.835)PPPKR 50.353 0.031895 456000000 719380 726670 492160 263180 820520 698380 811210 714980 680150 862720 TRUE FALSE FALSE 668955.1769 669086.0227 682737.5325 612696.3404 717602.7306 612220.9762 608236.6779 552194.6619 739105.9496 646689.2966 1.034430569 1.034632901 1.055742744 0.947435412 1.109656112 0.946700339 0.940539268 0.85387939 1.142907349 1 19.30271321 -6.308260286 24.99683689 0.965406091 1.032417035 0.119780631 0.077363247 797.4485181 425740.5639 0.026185548 0.023093591 4.92E-07 6.308260286 0.067010944 SVS(ph)PQNSDSSGFADVNGWHLR ddPTM_HeLa_A485_30min_R1 3 SVSPQNSDSSGFADVNGWHLR 21 0 S4R3E2;Q9UKB3 S4R3E2 DNAJC12 DnaJ homolog subfamily C member 12 1 0 S(0.018)VS(0.596)PQNS(0.386)DSSGFADVNGWHLR;SVS(0.999)PQNSDSSGFADVNGWHLR;S(0.113)VS(0.868)PQNS(0.019)DSSGFADVNGWHLR ;; 328.8 2.65E-114 589960000 119152 148463 155486 113964 204621 130382 140911 183181 137753 142444 TRUE FALSE FALSE 145656.9513 165824.4564 213006.7417 120189.5647 184248.2148 137208.5999 110804.2137 138255.5725 165398.7636 106935.3323 1.362103135 1.550698472 1.991921072 1.123946241 1.722987256 1.283098832 1.036179636 1.29288954 1.546717628 1 16.70637908 -6.397831225 6.570660009 1.232266059 1.550217938 0.286485761 0.252460462 0.340797861 16.81879259 0.088655113 0.077871577 4.00E-07 6.397831225 0.317951879 SVS(ph)PQNSDSSGFADVNGWHLR ddPTM_HeLa_A486_30min_R1 4 SVSPQNSDSSGFADVNGWHLR 21 0 S4R3E2;Q9UKB3 S4R3E2 DNAJC12 DnaJ homolog subfamily C member 12 1 0 S(0.071)VS(0.929)PQNSDSSGFADVNGWHLR;S(0.039)VS(0.961)PQNSDSSGFADVNGWHLR;S(0.127)VS(0.872)PQNSDSSGFADVNGWHLR;S(0.065)VS(0.929)PQNS(0.006)DSSGFADVNGWHLR ;;; 319.83 2.18E-102 851530000 128798 137499 110548 39951.9 158002 112599 142334 154558 117894 145283 TRUE FALSE FALSE 119769.9253 126603.0785 153355.1462 93010.04226 138183.9158 98707.6802 106720.5277 119368.5174 128113.1468 108903.1912 1.099783432 1.162528638 1.408178627 0.854061679 1.268869299 0.906380053 0.979957764 1.096097517 1.176394791 1 16.7326867 -5.261267197 24.99999135 1.04569117 1.217400059 0.274841485 0.136092531 21.80967883 3166494.277 0.036873381 0.059042538 5.48E-06 5.261267197 0.17170889 SVS(ph)PSPVPLLFQPDQNAPPIR ddPTM_HeLa_A485_30min_R1 4 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.012)VS(0.988)PS(0.001)PVPLLFQPDQNAPPIR;S(0.039)VS(0.961)PSPVPLLFQPDQNAPPIR;S(0.004)VS(0.994)PS(0.002)PVPLLFQPDQNAPPIR;S(0.011)VS(0.989)PSPVPLLFQPDQNAPPIR ;;; 403.81 4.48E-175 2123144000 200421.9 330143.2 323402 280013.8 399098 319584.4 372124.3 431103 319637.2 416825.8 TRUE FALSE FALSE 245005.0602 368750.5754 443041.8577 295310.2449 359362.4018 336317.345 292616.9033 325374.3133 383785.4542 312918.7992 0.782966894 1.17842257 1.415836501 0.943728039 1.148420621 1.074775136 0.935120882 1.039804301 1.226469791 1 18.25542881 -6.519686016 24.81446375 1.046706108 1.108465344 0.010884097 0.167645586 598.8906937 4654785.196 0.064215141 0.050789411 3.02E-07 6.519686016 0.061759236 SVS(ph)PSPVPLLFQPDQNAPPIR ddPTM_HeLa_A486_30min_R1 4 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.112)VS(0.744)PS(0.145)PVPLLFQPDQNAPPIR;S(0.014)VS(0.981)PS(0.005)PVPLLFQPDQNAPPIR;S(0.018)VS(0.981)PS(0.001)PVPLLFQPDQNAPPIR;S(0.01)VS(0.951)PS(0.039)PVPLLFQPDQNAPPIR ;;; 364 6.37E-142 2374170000 169855 200174 154471.6 86322.5 215365 179986 216256 219266 166869 222948 TRUE FALSE FALSE 157949.0416 184311.4832 214287.1404 200963.1425 188351.9135 157781.1573 162146.4615 169343.9183 181333.3393 167120.3697 0.945121423 1.102866656 1.282232327 1.202505373 1.127043423 0.944116852 0.970237571 1.013305073 1.085046303 1 17.35052806 -6.171158663 6.425976431 1.001667431 1.14391709 0.354241978 0.086770352 0.284000895 16.87032919 0.031068424 0.031078082 6.74E-07 6.171158663 0.142249658 SVS(ph)PSPVPLSSNYIAQISNGQQLMSQPQLHR ddPTM_HeLa_A485_30min_R1 1 SVSPSPVPLSSNYIAQISNGQQLMSQPQLHR 31 0 Q02241;H7BYN4 Q02241 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 SVS(0.961)PS(0.038)PVPLSSNYIAQISNGQQLMSQPQLHR 227.42 2.73E-39 1161900000 182900 260320 288100 149200 347370 214190 260280 297450 255590 332580 TRUE FALSE FALSE 223585.474 290762.1595 394680.1788 157350.4182 312784.6231 225404.6572 204669.0517 224499.9211 306884.5686 249673.9267 0.895509904 1.164567576 1.580782519 0.630223669 1.252772475 0.90279614 0.819745395 0.899172469 1.229141435 1 17.92968564 -5.267225541 24.99672009 0.961501736 1.208714751 0.199404747 0.230998669 768.2092297 3318730.906 0.063814341 0.097682773 5.40E-06 5.267225541 0.247213015 SVS(ph)PSPVPLSSNYIAQISNGQQLMSQPQLHR ddPTM_HeLa_A486_30min_R1 1 SVSPSPVPLSSNYIAQISNGQQLMSQPQLHR 31 0 Q02241;H7BYN4 Q02241 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(0.024)VS(0.846)PS(0.13)PVPLSSNYIAQISNGQQLMSQPQLHR 167.88 1.39E-14 846690000 226290 281840 273680 30631 265410 212800 268400 231190 201650 176240 TRUE FALSE FALSE 210428.2396 259505.972 379656.2254 71310.51601 232119.803 186546.8996 201243.4812 178553.0838 219129.1844 132108.3569 1.592845786 1.964341834 2.873824445 0.539788078 1.757041026 1.412074936 1.523321355 1.351565397 1.658707969 1 17.01136221 -5.257880489 24.99982385 1.365479134 2.125737736 0.419144558 0.441766953 319.4586095 2244064.403 0.118470453 0.195274802 5.52E-06 5.257880489 0.760258602 SVS(ph)PTTEMVSNESVDYR ddPTM_HeLa_A485_30min_R1 2 SVSPTTEMVSNESVDYR 17 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 1 0 S(0.002)VS(0.948)PT(0.04)T(0.01)EMVSNESVDYR;SVS(1)PTTEMVSNESVDYR ; 242.24 2.00E-42 661220000 157269 222334 226150 134714 189750 195032 157366 219063 184633 192761 TRUE FALSE FALSE 192252.9465 248334.0273 309812.2959 142073.0847 170857.8237 205243.5739 123743.4685 165337.4558 221687.1495 144709.2302 1.328546536 1.716089754 2.140929749 0.981783156 1.180697482 1.418317088 0.855118007 1.14254948 1.531948924 1 17.14279742 -5.276626454 24.99766569 1.16366351 1.727278816 0.498298295 0.262012405 652.6339739 1074223.047 0.074311027 0.110705793 5.29E-06 5.276626454 0.563615306 SVS(ph)PTTEMVSNESVDYR ddPTM_HeLa_A486_30min_R1 3 SVSPTTEMVSNESVDYR 17 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 1 0 S(0.032)VS(0.968)PTTEMVSNESVDYR;S(0.048)VS(0.949)PT(0.002)T(0.001)EMVSNESVDYR;S(0.001)VS(0.999)PTTEMVSNESVDYR ;; 262.66 1.12E-51 1007024000 266671 303362 338906 68706 406098 268061 236031 279968 316422 301809 TRUE FALSE FALSE 247978.74 279322.4903 470139.4794 159951.0402 355161.4021 234990.3593 176973.5473 216225.3981 343849.7137 226234.062 1.096115845 1.234661518 2.078110941 0.707015729 1.569884743 1.038704593 0.78225863 0.955759695 1.519884808 1 17.78745663 -6.302951001 21.68940782 1.039239477 1.337619629 0.121991624 0.370732818 229.1448906 119724.0276 0.129099386 0.113858597 4.98E-07 6.302951001 0.298380152 SVS(ph)RGS(ph)YQLQAQMNR ddPTM_HeLa_A486_30min_R1 1 SVSRGSYQLQAQMNR 15 1 Q9H1Z4;Q9H1Z4-2 Q9H1Z4 WDR13 WD repeat-containing protein 13 2 0 S(0.01)VS(0.99)RGS(0.963)Y(0.037)QLQAQMNR 103.75 0.00031174 0 127230 176950 143080 44924 196890 159410 175610 163450 161080 150100 TRUE FALSE FALSE 118311.834 162927.8376 198484.4078 104585.3423 172194.2203 139743.615 131670.5206 126236.0031 175042.5441 112513.983 1.051530049 1.44806746 1.764086583 0.929531953 1.53042507 1.242011092 1.170259172 1.121958353 1.555740357 1 16.77974478 -6.493992002 24.39972878 1.219864395 1.354252288 0.057953398 0.255544455 1684.859066 1423150.701 0.088392185 0.077789208 3.21E-07 6.493992002 0.134387893 SVS(ph)SSSYRR ddPTM_HeLa_A485_30min_R1 1 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.205)VS(0.562)S(0.231)S(0.002)SYRR 73.655 0.0073243 396260000 54784 121580 120430 32739 79131 121010 81010 158570 97235 40885 TRUE FALSE FALSE 66970.5118 135797.7234 164982.0685 34527.44867 71252.43979 127345.8965 63701.55171 119680.4589 116749.1726 30693.12193 2.18193874 4.424369854 5.375213016 1.124924625 2.321446478 4.149004352 2.075434094 3.899259878 3.803756844 1 14.90562778 -5.252723485 24.99434051 2.773609296 4.036893279 0.189397238 1.271135406 1183.615821 3394216.035 0.347784157 0.590851239 5.59E-06 5.252723485 1.263283982 SVS(ph)SSSYRR ddPTM_HeLa_A486_30min_R1 1 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.215)VS(0.727)S(0.058)SSYRR 81.625 0.0041771 306490000 67514 68359 93889 18845 113460 49998 46922 67568 48282 57488 TRUE FALSE FALSE 62781.61724 62941.98388 130245.3352 43872.11237 99228.78883 43829.7551 35181.61931 52184.2414 52467.12263 43092.63062 1.456899158 1.460620598 3.022450321 1.018088516 2.302685805 1.017105581 0.816418464 1.210978319 1.217542811 1 15.39515355 -6.282605163 23.98952315 1.050845614 1.849077358 0.372806498 0.518644386 534.616328 605937.2906 0.177959535 0.157129754 5.22E-07 6.282605163 0.798231744 SVS(ph)SYGNIR ddPTM_HeLa_A486_30min_R1 1 SVSSYGNIR 9 0 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 SVS(0.677)S(0.323)YGNIR 201.84 8.21E-10 342940000 686590 738780 613760 233780 835130 688730 815160 857400 554580 907490 TRUE FALSE FALSE 638463.5866 680236.3822 851424.3091 544251.6546 730380.2081 603761.4951 611198.3461 662188.7369 602651.4409 680248.5972 0.938573911 0.999982043 1.251636993 0.800077585 1.073696015 0.887560074 0.898492623 0.973451088 0.885928238 1 19.37570255 -5.280395424 24.99984563 0.932950707 1.057056141 0.259370005 0.10208644 1131.485528 1492237.657 0.027965947 0.041554724 5.24E-06 5.280395424 0.124105433 SVS(ph)TMNLSK ddPTM_HeLa_A485_30min_R1 1 SVSTMNLSK 9 0 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-3 Q14244-5 MAP7 Ensconsin 1 0 SVS(0.93)T(0.069)MNLSK 79.283 0.0086936 660330000 1896100 1641000 1226100 2133700 2176800 2091300 2855600 2894600 1267100 2656200 TRUE FALSE FALSE 2317880.904 1832900.675 1679685.412 2250258.628 1960070.149 2200797.234 2245477.732 2184694.811 1521395.347 1994058.224 1.162393794 0.919181122 0.84234522 1.128481908 0.982955325 1.10367752 1.126084337 1.095602318 0.762964355 1 20.9272761 -4.238225995 22.93245859 1.005094474 1.16239434 0.146752262 0.118652777 4338.754048 4286041.939 0.030050541 1.401658037 5.78E-05 4.238225995 0.157299866 SVS(ph)TTNIAGHFNDESPLGLR ddPTM_HeLa_A485_30min_R1 3 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVS(0.996)T(0.004)TNIAGHFNDESPLGLR;S(0.028)VS(0.954)T(0.018)T(0.001)NIAGHFNDESPLGLR;S(0.054)VS(0.827)T(0.054)T(0.065)NIAGHFNDESPLGLR ;; 340.25 1.22E-114 1979540000 854500 882320 889310 684000 981400 1007350 1001030 1053080 799270 978130 TRUE FALSE FALSE 1044580.577 985499.6488 1218302.776 721365.188 883688.3701 1060093.288 787151.7628 794810.4788 959676.1577 734300.1921 1.422552504 1.342093682 1.659134492 0.982384583 1.203442924 1.443678348 1.071975428 1.08240538 1.306926197 1 19.48601045 -1 0.136937422 0.964312762 2.698003546 0.311296786 0.174560097 97.0743466 0.891692516 0.812447937 32.80331823 0.1 1 1.733690784 SVS(ph)TTNIAGHFNDESPLGLR ddPTM_HeLa_A486_30min_R1 3 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.112)VS(0.702)T(0.152)T(0.034)NIAGHFNDESPLGLR;SVS(0.955)T(0.038)T(0.006)NIAGHFNDESPLGLR;S(0.125)VS(0.604)T(0.125)T(0.147)NIAGHFNDESPLGLR ;; 292.38 7.54E-87 2798500000 512708 705487 656915 147435 778470 615280 716742 646810 676360 574149 TRUE FALSE FALSE 476769.8168 649581.6408 911290.0808 343236.131 680827.0337 539373.0093 537405.5707 499545.4828 734987.4294 430378.3533 1.107792279 1.509326935 2.117416161 0.797521828 1.581926759 1.253253109 1.248681693 1.16071238 1.707770439 1 18.71524599 -5.270053061 24.99744439 1.270590557 1.571293321 0.16673739 0.333893239 1193.033575 3462256.511 0.091539703 0.13821319 5.37E-06 5.270053061 0.300702764 SVS(ph)TTNIAGHFNDESPLGLRR ddPTM_HeLa_A485_30min_R1 4 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.135)VS(0.837)T(0.028)TNIAGHFNDESPLGLRR;S(0.047)VS(0.905)T(0.047)TNIAGHFNDESPLGLRR;S(0.133)VS(0.852)T(0.015)TNIAGHFNDESPLGLRR;S(0.045)VS(0.93)T(0.024)TNIAGHFNDESPLGLRR ;;; 260.32 5.19E-59 1071140000 283480 499303 397521 173891 397781 535312 497554 636326 276089 286916 TRUE FALSE FALSE 346539.148 557692.1425 544580.5601 183390.225 358176.5269 563340.1086 391247.5233 480266.0508 331497.5299 215393.1215 1.60886822 2.589182694 2.528309894 0.851420991 1.662896774 2.615404358 1.816434622 2.229718607 1.539034894 1 17.71661265 -8.014554159 4.636869725 1.000934811 1.990090417 0.265478985 0.517558202 0.233652926 16.82382816 0.515294749 0.134640739 9.67E-09 8.014554159 0.989155606 SVS(ph)TTNIAGHFNDESPLGLRR ddPTM_HeLa_A486_30min_R1 2 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.132)VS(0.84)T(0.027)T(0.001)NIAGHFNDESPLGLRR;S(0.137)VS(0.832)T(0.031)T(0.001)NIAGHFNDESPLGLRR ; 233.54 3.83E-37 615420000 213100 231420 251370 75424 338890 175253 243400 235350 197844 239420 TRUE FALSE FALSE 198162.7904 213081.4364 348707.1959 175590.8837 296383.2562 153632.0667 182498.7456 181765.9427 214993.2772 179467.6736 1.104169829 1.187297033 1.943008392 0.978398394 1.651457614 0.856043117 1.016889236 1.012806033 1.197949875 1 17.45336448 -6.273418519 24.98689509 1.017547505 1.372316542 0.304594283 0.269049237 972.4695328 2028437.125 0.092112829 0.0818485 5.33E-07 6.273418519 0.354769037 SVS(ph)VATGLNMMK ddPTM_HeLa_A485_30min_R1 2 SVSVATGLNMMK 12 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 SVS(1)VATGLNMMK;SVS(0.995)VAT(0.005)GLNMMK ; 185.66 5.63E-13 379790000 513210 372480 304160 431280 653300 393480 719650 616310 346700 498090 TRUE FALSE FALSE 627371.7939 416038.2959 416681.4412 454839.7343 588255.1581 414082.0044 565890.8985 465159.0062 416279.5099 373925.3297 1.677799668 1.112624 1.114343983 1.216391879 1.573188847 1.107392229 1.51337942 1.243989025 1.113269086 1 18.51239068 -7.837623329 2.656166577 1.008764273 1.313544125 0.242220699 0.193446853 0.3836997 5.241237496 0.178906734 0.049509978 1.45E-08 7.837623329 0.304779852 SVS(ph)VATGLNMMK ddPTM_HeLa_A486_30min_R1 1 SVSVATGLNMMK 12 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 S(0.001)VS(0.997)VAT(0.002)GLNMMK 136.6 1.28E-05 137150000 160650 199000 163150 92298 223440 231170 279700 265070 142130 198820 TRUE FALSE FALSE 149389.2646 183230.5153 226326.0493 214874.4085 195414.0717 202650.5958 209716.1016 204719.3474 154449.9428 149034.1779 1.002382586 1.229452987 1.51861843 1.441779406 1.311203071 1.359759208 1.407167836 1.373640264 1.03633908 1 17.1852837 -7.775142045 10.65674257 1.017401728 1.34002094 0.468858224 0.132663054 0.30655191 219.835444 0.123100964 0.035115952 1.68E-08 7.775142045 0.322619211 SVS(ph)VDESRPELIFR ddPTM_HeLa_A485_30min_R1 3 SVSVDESRPELIFR 14 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 S(0.007)VS(0.993)VDESRPELIFR;S(0.021)VS(0.979)VDESRPELIFR;S(0.027)VS(0.973)VDESRPELIFR ;; 186.94 7.60E-18 637790000 340596 368407 421169 384609 554612 359431 419693 369519 370954 458166 TRUE FALSE FALSE 416360.4052 411488.9939 576976.9394 405619.2158 499392.8819 378250.2514 330022.162 278893.8859 445401.0652 343953.6481 1.210513124 1.196350137 1.677484575 1.179284529 1.451919131 1.099712864 0.959496036 0.810847297 1.294945024 1 18.39185463 -6.42968909 4.537090678 1.003200092 1.343243669 0.437222015 0.17735736 0.210126452 7.372660236 0.063663969 0.054995825 3.72E-07 6.42968909 0.340043577 SVS(ph)VDESRPELIFR ddPTM_HeLa_A486_30min_R1 1 SVSVDESRPELIFR 14 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 S(0.031)VS(0.969)VDESRPELIFR 175.39 6.94E-13 149300000 179010 225530 224740 82608 264530 223680 243750 249380 194670 211460 TRUE FALSE FALSE 166462.3234 207658.1814 311765.3467 192315.5988 231350.1808 196084.6358 182761.1719 192601.6179 211544.1523 158509.0396 1.050175585 1.310071539 1.966861622 1.21327843 1.459539351 1.237056488 1.153001572 1.215082865 1.334587307 1 17.27420559 -6.362294261 4.445323813 1.193885145 1.416001893 0.169106578 0.234851274 0.449650017 14.98760715 0.087190245 0.076426218 4.34E-07 6.362294261 0.222116748 SVS(ph)VDIR ddPTM_HeLa_A485_30min_R1 1 SVSVDIR 7 0 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 S(0.134)VS(0.866)VDIR 76.478 0.01569 193570000 307340 383160 345520 288630 420700 312160 373330 396830 321500 375080 TRUE FALSE FALSE 375706.7227 427967.229 473342.2263 304397.1261 378813.6308 328504.2149 293564.9957 299506.8203 386022.101 281579.4588 1.334283134 1.519880856 1.681025414 1.081034559 1.345316993 1.166648364 1.042565381 1.063667149 1.370917121 1 18.10318257 -5.270501582 24.9833646 1.159526934 1.51254491 0.582062035 0.139266032 446.9076612 1232068.385 0.039217151 0.059138084 5.36E-06 5.270501582 0.353017977 SVS(ph)VDSGEQR ddPTM_HeLa_A485_30min_R1 1 SVSVDSGEQR 10 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SVS(1)VDSGEQR 136.53 3.92E-05 625200000 426260 709250 786630 436180 845910 608730 580610 653670 581970 443710 TRUE FALSE FALSE 521080.0664 792190.6178 1077637.171 460007.4089 761688.2302 640602.1615 456557.9304 493356.4076 698766.0409 333101.2629 1.564329303 2.378227603 3.235163872 1.380983683 2.286656687 1.9231454 1.370628038 1.481100382 2.097758606 1 18.3456013 -6.330575716 1.070956125 1.50488209 2.274920675 0.252169249 0.535902219 0.740848013 1.769191396 0.304787762 0.258020749 4.67E-07 6.330575716 0.770038585 SVS(ph)VDSGEQR ddPTM_HeLa_A486_30min_R1 2 SVSVDSGEQR 10 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 S(0.001)VS(0.999)VDSGEQR;S(0.003)VS(0.997)VDSGEQR ; 123.2 0.0002473 554910000 1371780 1691450 1600300 370460 2105290 1279830 1281530 1480190 1440450 1238630 TRUE FALSE FALSE 1275625.306 1557413.342 2219979.018 862449.602 1841224.897 1121937.587 960877.6394 1143183.049 1565309.366 928468.9859 1.373901902 1.677399424 2.391010417 0.928894357 1.98307636 1.20837379 1.034905478 1.231256043 1.685903772 1 19.82449419 -6.290209371 23.88578905 1.234217294 1.670008439 0.236450496 0.394223228 639.3117414 530774.927 0.136514297 0.120420853 5.13E-07 6.290209371 0.435791145 SVS(ph)VVTGSEQK ddPTM_HeLa_A485_30min_R1 2 SVSVVTGSEQK 11 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 SVS(1)VVTGSEQK;SVS(1)VVTGSEQK ; 145.31 9.36E-07 148850000 272086 246392 206325 385810 365480 266375 457040 425690 243661 540350 TRUE FALSE FALSE 332610.592 275205.4011 282653.2034 406885.8234 329091.5279 280321.9831 359389.6703 321288.86 292561.5277 405650.6894 0.819943367 0.678429516 0.696789654 1.003044822 0.811268257 0.691042787 0.885958485 0.792033314 0.721215409 1 18.62987841 -11.34366136 2.337521455 2.335696391 0.789933637 0.30452656 0.095712003 8344922.194 917939.8374 59243632.7 0.025777275 4.53E-12 11.34366136 -1.545762754 SVS(ph)VVTGSEQK ddPTM_HeLa_A486_30min_R1 2 SVSVVTGSEQK 11 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 0 SVS(1)VVTGSEQK;S(0.003)VS(0.997)VVTGSEQK ; 119.69 0.00019396 371720000 203497 259110 146193 186137 271130 309070 428070 405660 213040 366950 TRUE FALSE FALSE 189232.9112 238577.1799 202802.8448 433336.3428 237122.3472 270940.0858 320962.3583 313300.0735 231506.4787 275063.3316 0.687961242 0.867353633 0.737295094 1.575405709 0.86206455 0.985009831 1.166867123 1.139010684 0.841647912 1 18.0694043 SVSDPVEDKKEQES(ph)DEEEEEEEEDEPSGATTR ddPTM_HeLa_A485_30min_R1 2 SVSDPVEDKKEQESDEEEEEEEEDEPSGATTR 32 2 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 SVSDPVEDKKEQES(1)DEEEEEEEEDEPSGATTR;SVSDPVEDKKEQES(1)DEEEEEEEEDEPSGATTR ; 314.57 1.19E-109 876350000 160251 101316 91990 398840 210362 211333 414140 316980 156678 633370 TRUE FALSE FALSE 195898.2821 113164.0249 126020.929 420627.6193 189417.6207 222398.0691 325655.6058 239240.158 188121.8375 475482.5153 0.411998919 0.237998289 0.265037988 0.8846332 0.398369266 0.46773133 0.684895018 0.503152377 0.39564407 1 18.85903276 -14 0.151625279 2.794523714 0.324158677 0.440100461 0.18017053 134.8083278 1.206247937 73.53153458 0.924897537 1.00E-14 14 -2.470365037 SVSEINS(ph)DDELSGK ddPTM_HeLa_A485_30min_R1 6 SVSEINSDDELSGK 14 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK ;;;;; 334.61 2.38E-81 2943850000 3575670 3314460 2563230 4701550 3942550 3127800 4681290 3982600 2986050 5901960 TRUE FALSE FALSE 4371065.456 3702057.265 3511475.442 4958383.772 3550015.879 3291566.772 3681094.149 3005861.106 3585322.845 4430709.99 0.98653838 0.835544929 0.792531096 1.119094633 0.801229574 0.742898267 0.830813607 0.678415223 0.809198267 1 22.07910647 -5.957214406 24.99998893 0.790962294 0.92184554 0.208136297 0.113073792 203.9233503 119153.2467 0.034056092 0.038615957 1.10E-06 5.957214406 0.130883247 SVSEINS(ph)DDELSGK ddPTM_HeLa_A486_30min_R1 6 SVSEINSDDELSGK 14 0 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 SVSEINS(1)DDELSGK;SVS(0.008)EINS(0.989)DDELS(0.003)GK;SVS(0.002)EINS(0.998)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK;SVSEINS(1)DDELSGK ;;;;; 324.49 1.49E-69 3295570000 4874750 4857960 2655730 1912660 4371340 5022740 6120290 5627230 3686230 6195090 TRUE FALSE FALSE 4533055.198 4472997.557 3684099.779 4452769.14 3823045.776 4403085.406 4588928.708 4346032.571 4005755.384 4643799.141 0.976152297 0.963219429 0.793337452 0.958863423 0.823258212 0.948164482 0.98818415 0.935878672 0.862603068 1 22.14687414 SVSEINS(ph)DDELSGKGYALVPIIVNSSTPK ddPTM_HeLa_A485_30min_R1 2 SVSEINSDDELSGKGYALVPIIVNSSTPK 29 1 A0A2R8Y7M0;P82094;P82094-2;F8WF45 A0A2R8Y7M0 TMF1 TATA element modulatory factor 1 0 S(0.001)VS(0.005)EINS(0.927)DDELS(0.067)GKGYALVPIIVNSSTPK;SVSEINS(1)DDELSGKGYALVPIIVNSSTPK ; 193.62 2.21E-21 522140000 237820 398690 173782 175505 392670 554730 781700 1359950 229080 286860 TRUE FALSE FALSE 290722.2385 445313.3274 238071.1935 185092.3937 353574.3961 583774.805 614683.4091 1026420.13 275054.2548 215351.0813 1.349992008 2.067848115 1.105502661 0.85949136 1.641851037 2.71080508 2.854331659 4.766264112 1.27723647 1 17.71633104 -6.219806302 3.796979087 2.789916344 1.369309086 0.216090536 1.01153456 0.291375486 8.963525654 0.343934713 0.332337019 6.03E-07 6.219806302 -1.420607258 SVSGS(ph)PEPAAK ddPTM_HeLa_A485_30min_R1 4 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 SVS(0.001)GS(0.999)PEPAAK;SVSGS(1)PEPAAK;SVSGS(1)PEPAAK;SVSGS(1)PEPAAK ;;; 203.61 9.39E-15 3703370000 5183090 5692020 4335100 6458070 7287700 6615500 8203400 8486700 5287530 9419200 TRUE FALSE FALSE 6336050.489 6357652.225 5938833.889 6810858.011 6562110.999 6961877.35 6450676.574 6405323.518 6348688.771 7071166.788 0.896040311 0.899095215 0.839866187 0.963187295 0.928009648 0.984544356 0.912250661 0.90583686 0.897827609 1 22.75351686 -5.270813919 24.9789167 0.937733784 0.880410034 0.402818094 0.035081769 712.14637 1897547.22 0.009944505 0.014986544 5.36E-06 5.270813919 -0.057323749 SVSGS(ph)PEPAAK ddPTM_HeLa_A486_30min_R1 4 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 SVS(0.001)GS(0.999)PEPAAK;SVSGS(1)PEPAAK;SVS(0.001)GS(0.999)PEPAAK;SVSGS(1)PEPAAK ;;; 188.91 9.84E-11 3470990000 8064400 7604200 4770760 2884220 8259500 8205500 9193600 8991700 6003700 9673300 TRUE FALSE FALSE 7499127.205 7001615.498 6618126.037 6714609.92 7223516.493 7193188.837 6893264.04 6944486.197 6524105.55 7251042.717 1.034213629 0.965601193 0.912713701 0.926019909 0.996203825 0.992021302 0.950658313 0.957722423 0.899747223 1 22.78975704 -6.967216815 24.97040626 0.948078931 0.967647462 0.045344953 0.039648596 680.506042 518328.6435 0.017350188 0.011697414 1.08E-07 6.967216815 0.019568531 SVSGS(ph)PESDELQELR ddPTM_HeLa_A486_30min_R1 1 SVSGSPESDELQELR 15 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SVS(0.005)GS(0.766)PES(0.23)DELQELR 130.01 2.10E-05 0 122360 139280 130540 37078 143770 119160 116940 141480 108140 118630 TRUE FALSE FALSE 113783.1959 128242.9456 181088.584 86319.45782 125737.026 104459.2507 87680.37513 109268.0925 117513.6623 88924.27585 1.27955156 1.442159009 2.036435858 0.970707459 1.413978633 1.174698919 0.986011686 1.22877686 1.321502606 1 16.4402897 -5.28902126 24.9994459 1.170437279 1.571660076 0.432085941 0.225082907 703.5662668 637691.2244 0.063346434 0.093982478 5.14E-06 5.28902126 0.401222797 SVSHGS(ph)NHTQKPDEQR ddPTM_HeLa_A486_30min_R1 2 SVSHGSNHTQKPDEQR 16 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.164)VS(0.164)HGS(0.336)NHT(0.336)QKPDEQR;S(0.216)VS(0.216)HGS(0.284)NHT(0.284)QKPDEQR ; 70.335 0.0051828 69138000 41299.4 51220 77163 1740.22 78722 22415.1 10226.4 27773.6 56264.1 3148.55 TRUE FALSE FALSE 38404.52533 47161.14066 107042.5801 4051.320106 68847.95271 19649.75286 7667.646556 21450.15757 61141.11749 2360.132586 16.27218977 19.98241155 45.35447742 1.716564624 29.17122246 8.325698724 3.248820257 9.088539219 25.90579777 1 11.20465219 -6.277417456 24.33064001 9.627744087 22.47466953 0.228144683 11.94152525 922.0074761 1403983.395 4.143114034 3.666469852 5.28E-07 6.277417456 12.84692544 SVSMLSLNT(ph)PNSNR ddPTM_HeLa_A485_30min_R1 2 SVSMLSLNTPNSNR 14 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 SVSMLSLNT(1)PNSNR;SVSMLSLNT(1)PNSNR ; 336.23 9.72E-81 268650000 308810 413200 406510 294940 540810 372810 424700 412880 285180 333030 TRUE FALSE FALSE 377503.7191 461520.1456 556894.9653 311051.8254 486965.0575 392329.7551 333959.3755 311620.5326 342413.0102 250011.75 1.509943909 1.845993821 2.22747517 1.244148827 1.947768685 1.569245266 1.335774721 1.246423549 1.36958767 1 17.93163637 -7.006161701 0.642084599 1.065280318 1.810640975 0.482835708 0.25620793 0.645143581 0.526222864 0.233749923 0.140257771 9.86E-08 7.006161701 0.745360657 SVSMLSLNT(ph)PNSNR ddPTM_HeLa_A486_30min_R1 2 SVSMLSLNTPNSNR 14 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 SVSMLSLNT(1)PNSNR;SVSMLS(0.007)LNT(0.993)PNSNR ; 235.88 1.80E-34 357660000 445570 444520 385080 157384 556830 394090 473520 470500 346670 437520 TRUE FALSE FALSE 414337.8439 409294.6163 534193.2888 366397.9057 486987.1892 345471.1826 355040.2876 363377.4209 376719.6347 327962.1442 1.263370945 1.247993476 1.628826065 1.117195726 1.484888417 1.053387376 1.082564844 1.107985868 1.148668044 1 18.32316977 -6.276807882 24.75477588 1.08552305 1.345602176 0.501311692 0.134507585 620.8333286 1000002.393 0.045381419 0.040174147 5.29E-07 6.276807882 0.260079126 SVSPS(ph)PVPLLFQPDQNAPPIR ddPTM_HeLa_A486_30min_R1 1 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.039)VS(0.323)PS(0.638)PVPLLFQPDQNAPPIR 224.86 1.04E-35 382950000 72620 87043 72824 51526 80025 76194 108210 97268 68058 129270 TRUE FALSE FALSE 67529.71301 80145.39567 101023.4031 119955.132 69987.5183 66793.95896 81134.71347 75122.19975 73957.32224 96899.95059 0.696901418 0.827094288 1.042553711 1.23792769 0.722265779 0.689308493 0.837303972 0.775255295 0.763233849 1 16.56420831 SVSPS(ph)PVPLSSNYIAQISNGQQLMSQPQLHR ddPTM_HeLa_A485_30min_R1 1 SVSPSPVPLSSNYIAQISNGQQLMSQPQLHR 31 0 Q02241;H7BYN4 Q02241 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(0.002)VS(0.041)PS(0.953)PVPLS(0.001)S(0.002)NYIAQISNGQQLMSQPQLHR 141.94 1.61E-09 1308300000 181130 252430 261010 155360 334820 220430 273900 282430 240390 301630 TRUE FALSE FALSE 221421.7436 281949.4927 357568.4605 163846.9234 301484.1452 231971.374 215379.0274 213163.5997 288634.068 226439.1921 0.977841961 1.245144403 1.579092635 0.723580233 1.33141327 1.024431203 0.951156138 0.941372373 1.274664802 1 17.78876416 -5.260874436 24.99999077 1.041176136 1.265138114 0.203755967 0.210040072 84.7635498 3750882.313 0.056976066 0.091541233 5.48E-06 5.260874436 0.223961978 SVSPTTEMVS(ph)NES(ph)VDYR ddPTM_HeLa_A486_30min_R1 1 SVSPTTEMVSNESVDYR 17 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 2 0 SVS(0.001)PT(0.008)T(0.009)EMVS(0.982)NES(1)VDYR 74.732 0.012251 50353000 61226 64311 75049 21233 91678 69418 55632 68441 74525 81918 TRUE FALSE FALSE 56934.37357 59214.76214 104109.9827 49431.49706 80178.89038 60853.91295 41712.28518 52858.47836 80984.887 61405.1996 0.92719141 0.964328144 1.695458745 0.805005071 1.305734545 0.99102215 0.679295653 0.860814372 1.318860415 1 15.9060732 -6.504046571 23.50994312 0.936288859 1.142735161 0.084744388 0.273236886 808.9044419 1009833.779 0.09698369 0.083980789 3.13E-07 6.504046571 0.206446302 SVSS(ph)PTSSNTPTPTK ddPTM_HeLa_A485_30min_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 SVSS(0.877)PT(0.123)SSNTPTPTK 328.59 2.92E-90 121630000 208530 250590 204770 240930 323160 254180 328630 357000 223570 350450 TRUE FALSE FALSE 254916.7791 279894.3207 280522.9442 254091.3958 290985.0557 267488.4718 258415.5158 269445.1902 268438.4483 263089.2646 0.968936454 1.063875872 1.066265264 0.965799179 1.106031659 1.016721348 0.982235122 1.024158818 1.020332201 1 18.00519285 -6.509714981 24.85791237 1.007378117 1.036570928 0.088867007 0.041438118 1487.406986 2808765.258 0.014592804 0.012294087 3.09E-07 6.509714981 0.029192811 SVSS(ph)PTSSNTPTPTK ddPTM_HeLa_A486_30min_R1 3 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 SVS(0.034)S(0.88)PT(0.07)S(0.014)S(0.003)NTPTPTK;S(0.01)VS(0.075)S(0.707)PT(0.115)S(0.024)S(0.048)NT(0.021)PTPTK;SVS(0.014)S(0.953)PT(0.022)S(0.007)S(0.001)NT(0.002)PTPTK ;; 226.65 7.97E-34 356346000 485774 579440 411865 215961 673160 635640 691340 685480 516985 708410 TRUE FALSE FALSE 451723.7511 533523.0641 571350.1581 502768.1221 588725.9958 557221.1995 518359.4198 529411.1679 561797.6761 531019.525 0.850672583 1.00471459 1.075949435 0.946797808 1.10867109 1.049342205 0.97615887 0.99697119 1.057960488 1 19.01840538 -4.273721998 4.14071054 1.026282854 0.838063343 0.563826904 0.046064336 0.149771497 5.689692565 0.011367987 0.082313955 5.32E-05 4.273721998 -0.188219511 SVSS(ph)SSYRR ddPTM_HeLa_A485_30min_R1 1 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SVS(0.009)S(0.448)S(0.226)S(0.317)YRR 81.525 0.019232 517270000 444470 599050 571010 386370 685550 544940 687980 772760 482810 530860 TRUE FALSE FALSE 543340.8181 669103.6865 782250.3607 407476.4148 617294.2349 573472.2158 540987.4527 583239.3984 579705.5384 398526.3718 1.363374814 1.678944566 1.962857206 1.022457844 1.548941999 1.43898185 1.357469646 1.463490097 1.454622779 1 18.60431567 -12.42183073 0.157956132 2.18E-16 1.634921433 0.300641286 0.224793334 96.52402758 1.399345929 33.11841646 1.083850812 3.79E-13 12.42183073 1.634921433 SVSS(ph)YGNIR ddPTM_HeLa_A485_30min_R1 4 SVSSYGNIR 9 0 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 SVSS(1)YGNIR;SVS(0.055)S(0.945)YGNIR;SVS(0.033)S(0.967)YGNIR;SVS(0.031)S(0.969)YGNIR ;;; 205.32 8.00E-21 490930000 2322730 3200860 3204330 2311450 4005730 3112850 3743120 4065200 2948060 3053070 TRUE FALSE FALSE 2839413.275 3575172.733 4389745.01 2437718.661 3606905.456 3275834.013 2943371.834 3068203.326 3539708.601 2291995.837 1.238838758 1.559851321 1.915249993 1.063579009 1.573696339 1.429249548 1.284195977 1.338660078 1.544378286 1 21.12817299 -12.37583454 0.228944616 1.06E-09 1.501223475 0.255575164 0.221482386 96.83986091 1.889953588 46.43739869 0.401736268 4.21E-13 12.37583454 1.501223474 SVSS(ph)YGNIR ddPTM_HeLa_A486_30min_R1 3 SVSSYGNIR 9 0 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 SVS(0.218)S(0.782)YGNIR;SVS(0.242)S(0.758)YGNIR;SVS(0.009)S(0.991)YGNIR ;; 191.55 1.87E-09 1196200000 2575820 2485570 2280070 804420 3114670 2406550 2640120 2884460 2314680 3031580 TRUE FALSE FALSE 2395268.32 2288604.381 3162974.166 1872730.413 2723999.045 2109654.329 1979534.052 2227731.425 2515318.326 2272452.636 1.054045432 1.007107627 1.391876828 0.824100966 1.198704432 0.928360088 0.871100247 0.980320289 1.106873818 1 21.11581879 -5.286361871 24.99975169 0.987786046 1.136619877 0.225638207 0.138405688 1212.618198 1216374.714 0.038454532 0.057061916 5.17E-06 5.286361871 0.148833831 SVSSNDAYNFNLEEGVHLT(ph)PFR ddPTM_HeLa_A485_30min_R1 1 SVSSNDAYNFNLEEGVHLTPFR 22 0 Q5FBB7-6;Q5FBB7 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 SVSSNDAYNFNLEEGVHLT(1)PFR 61.101 0.02426 44508000 20545 27093 26462 18769 31929 28311 31262 37156 25356 31062 TRUE FALSE FALSE 25115.16437 30261.29067 36251.39498 19794.30294 28750.03665 29793.32018 24582.61831 28043.43274 30444.71662 23318.81505 1.077034331 1.297719914 1.554598503 0.848855437 1.23291156 1.277651549 1.054196719 1.202609681 1.305585921 1 14.50920686 -11.23198593 2.263259982 0.307954598 1.206530416 0.108451851 0.176905245 10864241.3 2316157.145 38349165.22 0.044198474 5.86E-12 11.23198593 0.898575818 SVSSNDAYNFNLEEGVHLT(ph)PFR ddPTM_HeLa_A486_30min_R1 1 SVSSNDAYNFNLEEGVHLTPFR 22 0 Q5FBB7-6;Q5FBB7 Q5FBB7-6 SGOL1 Shugoshin-like 1 1 0 SVSSNDAYNFNLEEGVHLT(1)PFR 73.655 0.0075192 55191000 50741 52616 52609 18400 62582 46168 53180 55854 49744 40849 TRUE FALSE FALSE 47184.31793 48446.51654 72980.61372 42836.12988 54732.38201 40472.26156 39873.80152 43137.26348 54055.84997 30620.14452 1.540956735 1.582177919 2.38341833 1.398952571 1.787463216 1.321752794 1.302208143 1.408787064 1.765368871 1 14.90219347 -6.259594589 24.79737431 1.381584107 1.746858629 0.283397415 0.300154705 212.7474968 2859730.464 0.101050862 0.09617841 5.50E-07 6.259594589 0.365274521 SVSSNVASVS(ph)PIPAGSK ddPTM_HeLa_A485_30min_R1 4 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVSSNVASVS(1)PIPAGSK;SVSSNVAS(0.001)VS(0.999)PIPAGSK;SVSSNVASVS(1)PIPAGSK;SVSSNVAS(0.006)VS(0.994)PIPAGSK ;;; 329.56 1.83E-91 1958430000 1472700 1430250 1146750 1621380 2029510 1491820 2119220 2301190 1341830 2156590 TRUE FALSE FALSE 1800297.034 1597505.296 1570980.545 1709951.884 1827444.858 1569929.388 1666431.335 1736819.544 1611122.973 1618991.802 1.111986504 0.986728465 0.970344966 1.056183164 1.128754856 0.9696957 1.029301898 1.072778468 0.995139673 1 20.62666425 -9.670881543 13.97655841 1 1.034603782 0.037647333 0.053847296 0 0 0.052014413 0.012615348 2.13E-10 9.670881543 0.034603782 SVSSNVASVS(ph)PIPAGSK ddPTM_HeLa_A486_30min_R1 4 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVSSNVASVS(1)PIPAGSK;SVSSNVASVS(1)PIPAGSK;SVSSNVASVS(1)PIPAGSK;SVSSNVAS(0.022)VS(0.978)PIPAGSK ;;; 292.88 2.53E-68 1654340000 2069090 2000920 1240730 785990 2068020 2164470 2463390 2455970 1628190 2351700 TRUE FALSE FALSE 1924057.476 1842359.812 1721173.884 1829824.442 1808629.648 1897439.698 1847023.767 1896799.244 1769322.82 1762819.013 1.09146626 1.045121364 0.976375834 1.038010385 1.025987146 1.076366708 1.047767101 1.076003396 1.003689436 1 20.74945293 -4.29651423 4.577877012 1.034253891 1.093603166 0.256837742 0.03045923 0.255165979 12.41644161 0.007797445 0.043635159 5.05E-05 4.29651423 0.059349275 SVSSNVASVS(ph)PIPAGSKK ddPTM_HeLa_A485_30min_R1 2 SVSSNVASVSPIPAGSKK 18 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVSSNVASVS(1)PIPAGSKK;SVSSNVASVS(1)PIPAGSKK ; 196.62 1.18E-19 1352430000 1009210 922440 595690 1053030 1255000 1133810 1539500 1772310 879610 1452360 TRUE FALSE FALSE 1233705.283 1030311.334 816060.5197 1110554.362 1130047.793 1193174.538 1210573.248 1337648.194 1056139.659 1090313.381 1.131514393 0.944968073 0.748464189 1.018564371 1.036443112 1.094340911 1.110298443 1.226847453 0.968656973 1 20.05631143 -5.741769424 2.647959514 1.091984772 0.937586755 0.208284895 0.109313172 0.36955205 5.306252844 0.036048542 0.045980527 1.81E-06 5.741769424 -0.154398018 SVSSNVASVS(ph)PIPAGSKK ddPTM_HeLa_A486_30min_R1 2 SVSSNVASVSPIPAGSKK 18 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVSSNVASVS(1)PIPAGSKK;SVSSNVASVS(1)PIPAGSKK ; 219.3 1.41E-34 1208220000 1458340 1174280 582630 570780 1172300 1376950 1557930 1523410 859430 1683860 TRUE FALSE FALSE 1356117.897 1081225.776 808239.9394 1328804.686 1025259.203 1207075.909 1168119.436 1176562.799 933926.0844 1262210.496 1.07439916 0.856612886 0.640336887 1.052759971 0.81227276 0.956319023 0.925455334 0.93214468 0.739913103 1 20.26752109 SVSSPTSSNT(ph)PTPTK ddPTM_HeLa_A485_30min_R1 2 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 SVSSPT(0.009)S(0.144)S(0.037)NT(0.805)PT(0.005)PTK;SVSSPTS(0.006)S(0.274)NT(0.706)PT(0.015)PTK ; 192.04 1.06E-15 0 152002 148346 118874 167548 187108 182659 213796 222803 141747 257044 TRUE FALSE FALSE 185814.3205 165693.7743 162850.4394 176700.723 168478.8705 192222.7428 168116.738 168160.2149 170194.3227 192967.6613 0.962929846 0.85866084 0.843926066 0.91570122 0.873093809 0.996139672 0.871217161 0.871442467 0.881983652 1 17.55799957 SVSSSS(ph)YRR ddPTM_HeLa_A485_30min_R1 5 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SVSSS(0.002)S(0.998)YRR;SVSS(0.071)S(0.183)S(0.746)YRR;SVS(0.002)S(0.126)S(0.126)S(0.746)YRR;SVSSS(0.004)S(0.996)YRR;SVS(0.004)S(0.111)S(0.111)S(0.775)YRR ;;;; 138.65 0.00011176 5971950000 2641790 3469870 3503260 2423884 4443430 3243420 4277410 4609460 2963020 3119990 TRUE FALSE FALSE 3229447.071 3875641.113 4799261.657 2556294.645 4001026.507 3413240.456 3363506.41 3478982.708 3557670.936 2342233.912 1.378789307 1.654677226 2.049010405 1.091391697 1.708209623 1.457258576 1.436024981 1.48532676 1.518922135 1 21.15945373 -11.98777314 0.219682933 8.21E-11 1.623436831 0.326845267 0.232347765 65.4406969 1.442799545 30.92297818 0.467607057 1.03E-12 11.98777314 1.623436831 SVSSSS(ph)YRR ddPTM_HeLa_A486_30min_R1 7 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SVS(0.001)S(0.004)S(0.025)S(0.97)YRR;SVSS(0.144)S(0.144)S(0.711)YRR;SVSS(0.083)S(0.083)S(0.834)YRR;SVS(0.001)S(0.093)S(0.093)S(0.812)YRR;SVSS(0.092)S(0.092)S(0.816)YRR;SVSSS(0.006)S(0.994)YRR;SVS(0.036)S(0.026)S(0.026)S(0.911)YRR ;;;;;; 123.38 0.00050042 2967027000 2643976 3009401 2775214 1049178 3597498 2689916 3303457 3341729 2511386 2868501 TRUE FALSE FALSE 2458646.936 2770925.105 3849851.184 2442539.407 3146266.256 2358061.513 2476897.118 2580890.256 2729074.961 2150209.679 1.1434452 1.288676696 1.790453843 1.135954056 1.463236952 1.096665844 1.151932829 1.200297014 1.269213411 1 21.03604592 -6.266689067 24.95742262 1.156659818 1.371132492 0.261467507 0.184661702 646.6188839 3074065.194 0.064082333 0.058188915 5.41E-07 6.266689067 0.214472674 SVSSSSYR ddPTM_HeLa_A485_30min_R1 2 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 224.8 5.52E-15 101008000 68270 81467 90295 72410 110728 80938 98646 90543 82968 107371 FALSE FALSE TRUE 83456.42597 90993.85698 123698.878 76365.57495 99703.53153 85175.78853 77569.47624 68337.18728 99618.91657 80605.38572 1.035370344 1.12888061 1.534622989 0.947400403 1.236933868 1.056700961 0.962336146 0.847799271 1.235884125 1 16.29858862 -6.441009013 4.482945753 0.999526409 1.180522344 0.176709352 0.169464368 0.377650503 13.66757993 0.061637348 0.053005204 3.62E-07 6.441009013 0.180995935 SVSSSSYRR ddPTM_HeLa_A485_30min_R1 1 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 88.136 0.0037371 0 5223.5 8490 7073 3805.1 9584.7 7528.3 8958.2 12654 6029.5 4734.1 FALSE FALSE TRUE 6385.449554 9482.831647 9689.597032 4012.962978 8630.413614 7922.470147 7044.207388 9550.586659 7239.565344 3553.975995 1.796705876 2.668231767 2.726410377 1.129147463 2.428382642 2.229185048 1.982063863 2.687296333 2.037032708 1 11.79521822 -8.033260735 23.1286994 0.999999986 2.213438134 0.37627465 0.46301777 1894.325295 1317266.531 0.440020215 0.113612731 9.26E-09 8.033260735 1.213438148 SVSSVLSSLT(ph)PAK ddPTM_HeLa_A485_30min_R1 2 SVSSVLSSLTPAK 13 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 SVSSVLSS(0.001)LT(0.999)PAK;SVSSVLSSLT(1)PAK ; 271.46 9.31E-48 811770000 613610 550160 426130 677320 721270 693180 932520 945370 467220 889290 TRUE FALSE FALSE 750105.4276 614496.4262 583773.2197 714320.2765 649457.8263 729473.8329 733279.484 713516.5252 560986.7684 667606.3692 1.123574403 0.92044722 0.874427277 1.069972231 0.972815504 1.092670572 1.098371013 1.068768301 0.840295711 1 19.34863819 -4.233091952 23.21811591 0.999697767 1.123574885 0.163851851 0.087289577 7943.912816 6506234.344 0.022596593 1.880220601 5.85E-05 4.233091952 0.123877118 SVSSVLSSLT(ph)PAK ddPTM_HeLa_A486_30min_R1 2 SVSSVLSSLTPAK 13 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 SVSSVLSSLT(1)PAK;SVSSVLSSLT(0.999)PAK ; 242.26 2.49E-34 998640000 1971180 1751240 1036110 674650 1708430 1822470 2260700 2025230 1318200 2267600 TRUE FALSE FALSE 1833010.461 1612465.364 1437319.54 1570619.295 1494142.779 1597632.181 1695048.949 1564129.339 1432462.637 1699778.2 1.078382145 0.948632806 0.845592407 0.924014259 0.879022203 0.939906266 0.997217724 0.92019614 0.842735033 1 20.69691507 -4.297056105 3.852343696 0.917088015 1.088918791 0.464205581 0.05112252 0.193248112 5.521228968 0.012930539 0.087296017 5.05E-05 4.297056105 0.171830776 SVST(ph)PSEAGSQDSGDGAVGSR ddPTM_HeLa_A485_30min_R1 2 SVSTPSEAGSQDSGDGAVGSR 21 0 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8;E7EMU4;E7EUM4;E7ESD3;E7ET01;E7ERH4;E7ERR6;Q13409-7;Q13409-5;Q13409 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 SVS(0.048)T(0.951)PSEAGSQDSGDGAVGSR;SVS(0.003)T(0.995)PS(0.002)EAGSQDSGDGAVGSR ; 334.07 1.18E-113 391190000 207801 265123 261070 202366 310150 237750 302140 329010 221097 258538 TRUE FALSE FALSE 254025.6155 296126.8286 357650.657 213420.7422 279270.377 250198.2224 237585.3207 248319.7816 265469.1399 194089.2346 1.308808374 1.52572516 1.842712491 1.099601132 1.438876182 1.289088613 1.224103548 1.279410381 1.367768493 1 17.56636057 -10.27059561 0.072437595 0.162341989 1.977228836 0.333722956 0.181011291 126.9109508 1.627955179 31.11727804 12.29213725 5.36E-11 10.27059561 1.814886847 SVST(ph)PSEAGSQDSGDGAVGSR ddPTM_HeLa_A486_30min_R1 2 SVSTPSEAGSQDSGDGAVGSR 21 0 E9PGG1;E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ETL8;E7EMU4;E7EUM4;E7ESD3;E7ET01;E7ERH4;E7ERR6;Q13409-7;Q13409-5;Q13409 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 S(0.001)VS(0.141)T(0.858)PSEAGSQDSGDGAVGSR;SVS(0.004)T(0.996)PSEAGSQDSGDGAVGSR ; 368.83 2.25E-141 1129940000 292480 340420 260989 96245 357130 304060 353320 360570 248340 318510 TRUE FALSE FALSE 271978.6624 313443.8794 362050.9303 224063.224 312335.4253 266548.1687 264915.599 278476.0822 269866.3112 238753.0228 1.13916322 1.312837323 1.516424488 0.938472826 1.308194642 1.116417985 1.109580083 1.1663772 1.130315788 1 17.86515947 -6.655885377 0.250928541 0.98913257 1.34366116 0.21808536 0.140074256 4.238281004 0.761108616 0.299736269 0.534399607 2.21E-07 6.655885377 0.354528591 SVST(ph)TNIAGHFNDESPLGLR ddPTM_HeLa_A486_30min_R1 1 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.014)VS(0.298)T(0.553)T(0.135)NIAGHFNDESPLGLR 162.91 3.36E-13 809700000 131430 159740 152580 34264 205850 151910 151800 161260 144700 120730 TRUE FALSE FALSE 122217.4357 147081.6206 211663.0622 79768.32361 180030.3735 133168.8887 113818.0344 124544.6183 157242.7125 90498.42218 1.350492448 1.625239613 2.338859144 0.881433308 1.989320578 1.471505088 1.257679766 1.376207621 1.737518829 1 16.46560502 -11.96375006 0.18251127 7.51E-17 1.700667618 0.159280386 0.383018614 103.9807016 1.974705566 42.00365842 1.232426538 1.09E-12 11.96375006 1.700667618 SVSTTGS(ph)LQR ddPTM_HeLa_A485_30min_R1 5 SVSTTGSLQR 10 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 SVSTTGS(1)LQR;SVSTTGS(1)LQR;S(0.029)VS(0.112)T(0.006)T(0.002)GS(0.851)LQR;S(0.031)VS(0.355)T(0.039)T(0.016)GS(0.559)LQR;SVS(0.006)T(0.001)T(0.001)GS(0.993)LQR ;;;; 160.86 5.92E-07 2077200000 1350028 1564050 1569983 1264530 1964600 1640840 1848960 1985030 1371581 1826980 TRUE FALSE FALSE 1650337.071 1746952.042 2150785.044 1333608.072 1768997.526 1726751.845 1453914.591 1498198.28 1646844.726 1371547.509 1.203266427 1.273708734 1.568144763 0.972338226 1.289782172 1.258980702 1.060054123 1.092341512 1.200720146 1 20.38737317 -6.707596315 0.366946093 1.01685102 1.334566718 0.253266889 0.143266736 2.015898799 0.657767318 0.17211765 0.22907286 1.96E-07 6.707596315 0.317715699 SVSTTGS(ph)LQR ddPTM_HeLa_A486_30min_R1 4 SVSTTGSLQR 10 0 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 SVSTTGS(1)LQR;SVSTTGS(1)LQR;SVS(0.001)TTGS(0.998)LQR;SVS(0.007)TTGS(0.992)LQR ;;; 157.47 1.42E-06 2042320000 1546490 1494760 1317370 438419 1855860 1526080 1597160 1675550 1453690 1815070 TRUE FALSE FALSE 1438089.037 1376309.774 1827490.944 1020661.588 1623080.734 1337807.766 1197533.675 1294063.842 1579697.02 1360564.658 1.056979563 1.011572486 1.343185665 0.750174997 1.192946417 0.983273935 0.880174028 0.951122635 1.161059866 1 20.37577409 -5.255845091 24.99986313 0.990157195 1.124678533 0.182067179 0.143808356 882.9707805 3945824.454 0.038296882 0.063970591 5.55E-06 5.255845091 0.134521337 SVSTTNIAGHFNDES(ph)PLGLR ddPTM_HeLa_A485_30min_R1 2 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVSTTNIAGHFNDES(1)PLGLR;SVSTTNIAGHFNDES(1)PLGLR ; 176.09 2.93E-14 700670000 357070 397150 405640 337420 489750 359390 349340 389080 413010 515080 TRUE FALSE FALSE 436498.9896 443593.2378 555703.1161 355852.4002 440988.7704 378207.1047 274700.6552 293657.5199 495897.3186 386680.0353 1.128837669 1.147184228 1.437113544 0.920276114 1.140448769 0.978088006 0.710408167 0.759432847 1.282448726 1 18.56078075 -5.76467918 1.424023337 0.924244689 1.212524505 0.25207562 0.183860537 0.531509937 2.249299253 0.071171148 0.098579136 1.72E-06 5.76467918 0.288279816 SVSTTNIAGHFNDES(ph)PLGLR ddPTM_HeLa_A486_30min_R1 2 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVSTTNIAGHFNDES(1)PLGLR;SVSTTNIAGHFNDES(1)PLGLR ; 254.11 1.14E-58 802810000 521920 537260 426990 109262 551090 439510 422040 446650 489820 411610 TRUE FALSE FALSE 485336.1032 494685.5609 592331.9632 254367.4578 481967.1535 385287.7248 316441.1281 344957.5453 532277.992 308540.1769 1.573007795 1.603310032 1.919788759 0.82442248 1.562088796 1.248744098 1.025607528 1.118031204 1.725149695 1 18.23509884 -5.247759684 24.98430069 1.227775112 1.68916297 0.411458552 0.264788276 805.8512238 1471786.942 0.069989441 0.120388322 5.65E-06 5.247759684 0.461387857 SVSTTNIAGHFNDES(ph)PLGLRR ddPTM_HeLa_A485_30min_R1 3 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVSTTNIAGHFNDES(1)PLGLRR;SVSTTNIAGHFNDES(1)PLGLRR;SVSTTNIAGHFNDES(1)PLGLRR ;; 257.53 6.55E-59 912260000 276818 478490 418460 222128 489340 446800 456290 610660 338808 364812 TRUE FALSE FALSE 338395.2091 534445.2432 573265.7676 234262.2902 440619.5914 470193.7571 358799.914 460894.6775 406803.6579 273871.0823 1.235600365 1.951448246 2.093195685 0.855374318 1.60885767 1.716843389 1.310105145 1.682889167 1.48538376 1 18.06313742 -11.81681273 0.279469819 4.18E-12 1.608358939 0.190784028 0.338906084 98.08199035 2.821315069 59.14254566 0.410945117 1.52E-12 11.81681273 1.608358939 SVSTTNIAGHFNDES(ph)PLGLRR ddPTM_HeLa_A486_30min_R1 2 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVSTTNIAGHFNDES(1)PLGLRR;SVSTTNIAGHFNDES(1)PLGLRR ; 287.91 1.30E-73 261990000 145198 140083 118899 27957 179189 119271 144862 165865 114273 142935 TRUE FALSE FALSE 135020.37 128982.3129 164939.877 65085.30887 156713.4447 104556.5567 108615.9954 128101.1603 124178.2756 107143.1456 1.260186727 1.203831679 1.539434707 0.607461247 1.462654879 0.975858568 1.013746561 1.19560761 1.158994119 1 16.70918003 -5.16449123 22.97820836 1.078269865 1.321412574 0.247081332 0.218082502 37.64492346 8915.807233 0.055921392 0.096858712 6.85E-06 5.16449123 0.243142709 SVT(ph)PTKEFLKDEIK ddPTM_HeLa_A485_30min_R1 2 SVTPTKEFLKDEIK 14 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 S(0.002)VT(0.997)PT(0.001)KEFLKDEIK;S(0.102)VT(0.883)PT(0.016)KEFLKDEIK ; 203.89 6.41E-22 2720800000 2228950 1266030 652470 3559800 1481460 1928660 3338000 2668400 1317880 4454700 TRUE FALSE FALSE 2724772.238 1414081.196 893845.8045 3754262.86 1333960.641 2029641.655 2624809.031 2013970.716 1582366.428 3344225.273 0.814769346 0.422842686 0.267280381 1.122610636 0.398884803 0.606909371 0.784878056 0.602223401 0.473163827 1 21.6732406 -10.30424375 3.89524528 1.000746249 0.608421084 0.198587875 0.234768942 315342203 589448429.2 2868402.082 0.057002801 4.96E-11 10.30424375 -0.392325165 SVT(ph)PTKEFLKDEIK ddPTM_HeLa_A486_30min_R1 3 SVTPTKEFLKDEIK 14 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 SVT(0.935)PT(0.065)KEFLKDEIK;S(0.122)VT(0.756)PT(0.122)KEFLKDEIK;S(0.001)VT(0.586)PT(0.413)KEFLKDEIK ;; 185.85 1.70E-17 3945760000 3305860 2737190 841836 1608020 1869010 3700880 4462260 3861910 2116600 6063340 TRUE FALSE FALSE 3074136.285 2520285.096 1167817.444 3743551.825 1634581.338 3244303.053 3345755.351 2982637.398 2300068.592 4545040.198 0.676371638 0.554513268 0.25694326 0.823656483 0.359640678 0.71381174 0.73613328 0.656240048 0.506061221 1 22.11586162 -14 0.203524283 2.905942489 0.523425232 0.357099716 0.166040113 155.0211594 1.538490186 120.2815142 0.374456477 1.00E-14 14 -2.382517257 SVT(ph)SSPVEKK ddPTM_HeLa_A485_30min_R1 2 SVTSSPVEKK 10 1 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4;F8VVB8 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.002)VT(0.415)S(0.326)S(0.257)PVEKK;S(0.016)VT(0.429)S(0.318)S(0.237)PVEKK ; 78.903 0.0028106 278540000 510700 529780 352720 673720 633340 657000 946000 1078410 483820 1052720 TRUE FALSE FALSE 624303.4531 591733.1625 483205.8059 710523.6177 570282.4458 691399.5041 743879.3719 813928.2566 580918.2361 790296.2779 0.789961272 0.748748513 0.611423613 0.899059805 0.721605886 0.874861142 0.94126645 1.029902683 0.735063865 1 19.59203409 -6.420823421 3.532169886 0.927893264 0.753916432 0.409663384 0.098543544 0.249291679 5.758236481 0.036222662 0.03091253 3.79E-07 6.420823421 -0.173976832 SVTAFFTWLR ddPTM_HeLa_A485_30min_R1 2 SVTAFFTWLR 10 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 0 0 ; ; 162.49 1.82E-05 21309000 14762.8 17061 17224 13976.7 20436 17048.3 22610 20669.3 11760.9 21485 FALSE FALSE TRUE 18046.73393 19056.13554 23595.87435 14740.21173 18401.32008 17940.92263 17779.18879 15600.12177 14121.20475 16129.1849 1.118886915 1.181469222 1.462930365 0.913884478 1.140871048 1.112326676 1.102299273 0.967198396 0.875506409 1 13.97738591 -6.587234902 0.64222855 0.934618746 1.211201276 0.343497105 0.128536063 0.898814872 0.768952268 0.111947479 0.089322895 2.59E-07 6.587234902 0.27658253 SVTAFFTWLR ddPTM_HeLa_A486_30min_R1 1 SVTAFFTWLR 10 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 0 0 134.25 0.0026423 7668200 1937.3 2713.7 2442.7 1647.4 3319.7 2514.6 3475.8 2860.2 2482.9 2468.4 FALSE FALSE TRUE 1801.505274 2498.656529 3388.578858 3835.230455 2903.312271 2204.374219 2606.118077 2208.994898 2698.119771 1850.296573 0.973630552 1.350408667 1.831370661 2.072765258 1.569106441 1.191362644 1.408486679 1.193859908 1.458209354 1 10.85354082 -6.235676674 11.41455005 1.272388418 1.591550592 0.210073218 0.294879226 1.776640149 783.2137168 0.1057737 0.104953704 5.81E-07 6.235676674 0.319162174 SVTEQGAELSNEER ddPTM_HeLa_A485_30min_R1 2 SVTEQGAELSNEER 14 0 E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 ; ; 378.52 9.98E-154 120636000 25251.8 33610 32220 24813.2 39994 33414 40065 42975 30351 37323 FALSE FALSE TRUE 30868.97579 37540.39713 44139.51879 26168.68229 36012.05693 35163.50537 31504.78545 32435.31387 36442.1673 28019.06298 1.101713352 1.339816294 1.575338862 0.933959937 1.285269852 1.254985058 1.12440539 1.157615938 1.300620486 1 14.77412109 -13.99999996 0.141870651 0.204183536 1.312376962 0.150831573 0.161789233 260.6810817 2.250245673 58.7123373 0.964489571 1.00E-14 13.99999996 1.108193426 SVTEQGAELSNEER ddPTM_HeLa_A486_30min_R1 1 SVTEQGAELSNEER 14 0 E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 156 1.62E-06 0 53423 55749 45313 29447 84256 45156 60188 54645 32961 87243 FALSE FALSE TRUE 49678.32358 51331.24621 62859.40712 68554.10417 73687.82682 39585.11183 45128.3258 42203.52639 35818.08602 65396.78494 0.759644738 0.784920027 0.961200267 1.048279426 1.126780573 0.605306696 0.690069486 0.645345584 0.547704081 1 15.99693209 -6.279049076 24.9895929 0.675043278 0.935381944 0.376355246 0.152102376 859.1166307 1219152.714 0.054970916 0.048582342 5.26E-07 6.279049076 0.260338666 SVTLLEVCGS(ph)WPEGFGLR ddPTM_HeLa_A485_30min_R1 3 SVTLLEVCGSWPEGFGLR 18 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;K7EIE2;Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 SVTLLEVCGS(1)WPEGFGLR;SVTLLEVCGS(1)WPEGFGLR;SVTLLEVCGS(1)WPEGFGLR ;; 381.45 6.62E-131 189015100 83660.2 103047.8 113778.8 91387.3 135199.6 82952.2 109318.8 114840.9 77972.6 123384 TRUE FALSE FALSE 102270.1229 115098.3438 155870.3129 96379.55679 121738.6531 87295.44892 85961.94533 86675.98921 93620.98561 92626.63951 1.104111338 1.242605199 1.682780609 1.040516608 1.314294179 0.942444305 0.92804776 0.935756599 1.010734991 1 16.49913955 -6.263063955 24.82950671 0.957172195 1.284379242 0.485752918 0.161107448 116.7684333 1784639.987 0.055868533 0.051873757 5.46E-07 6.263063955 0.327207047 SVTLLEVCGS(ph)WPEGFGLR ddPTM_HeLa_A486_30min_R1 2 SVTLLEVCGSWPEGFGLR 18 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;K7EIE2;Q9H6U6-7;Q9H6U6-3;Q9H6U6-8 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 SVTLLEVCGS(1)WPEGFGLR;SVTLLEVCGS(1)WPEGFGLR ; 216.19 2.92E-34 128124000 135989 160476 147716 64639 190216 139840 163119 177533 120977 161437 TRUE FALSE FALSE 126456.8733 147759.2973 204915.5912 150482.8587 166357.3356 122587.9626 122304.9009 137112.6114 131463.3838 121012.1244 1.044993417 1.221028868 1.693347606 1.243535385 1.374716264 1.013022151 1.010683033 1.133048544 1.08636539 1 16.88479208 -6.262192143 24.98961396 1.054568051 1.327265365 0.416736391 0.157493509 72.27300083 2399230.967 0.056180515 0.052466823 5.47E-07 6.262192143 0.272697314 SVTLLIK(ac)GPNK ddPTM_HeLa_A485_30min_R1 1 SVTLLIKGPNK 11 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 1 SVTLLIK(1)GPNK 173.32 2.27E-09 0 16233 14233 18315 21229 26996 16805 20614 16089 18181 27251 FALSE TRUE FALSE 19843.97485 15897.42554 25090.48065 22388.68652 24308.18345 17684.88381 16209.6505 12143.14752 21829.75993 20457.82722 0.969994254 0.777082794 1.226448947 1.094382423 1.188209441 0.864455625 0.792344677 0.593569757 1.067061507 1 14.32036531 -6.417599992 7.012459374 0.829260428 1.047639337 0.232061717 0.16608354 0.352547303 20.52497106 0.060059545 0.052766755 3.82E-07 6.417599992 0.218378908 SVTLLIK(ac)GPNKHTLTQIK ddPTM_HeLa_A485_30min_R1 1 SVTLLIKGPNKHTLTQIK 18 2 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 1 SVTLLIK(1)GPNKHTLTQIK 160.97 4.58E-14 22219000 28421 35682 22803 25126 40421 38749 57290 66657 21751 30606 FALSE TRUE FALSE 34743.1534 39854.69951 31238.77861 26498.56976 36396.54331 40777.83772 45049.52348 50309.26624 26116.22619 22976.48746 1.512117701 1.734586262 1.359597661 1.15329072 1.584077783 1.774763779 1.960679306 2.189597793 1.136650075 1 14.48787064 -5.997521955 24.93187583 1.705232888 1.444395594 0.018750666 0.361395388 185.3285056 1864567.653 0.111426266 0.125614604 1.01E-06 5.997521955 -0.260837294 SVTLRK(ac)MK(ac)QEIK ddPTM_HeLa_A485_30min_R1 1 SVTLRKMKQEIK 12 3 H0YFK8;F5H4N6;Q9Y3R0-3;Q9Y3R0-2;Q9Y3R0 H0YFK8 GRIP1 Glutamate receptor-interacting protein 1 0 2 SVTLRK(1)MK(1)QEIK 42.001 0.023801 0 4651 4622.1 5475.5 9336.1 8950 5353.8 8951.3 7461.8 5591 14066 FALSE TRUE FALSE 5685.598904 5162.614388 7501.115305 9846.107503 8058.906575 5634.116689 7038.78163 5631.78185 6713.062416 10559.60507 0.538429124 0.488902223 0.710359455 0.932431416 0.763182574 0.533553732 0.66657622 0.533332621 0.635730444 1 13.36626826 -11.24166251 2.156128042 2.168177885 0.648112687 0.411786255 0.127327838 6284762.991 1022095.56 35788927.85 0.035301634 5.73E-12 11.24166251 -1.520065197 SVTPDSLGHT(ph)PPAR ddPTM_HeLa_A486_30min_R1 1 SVTPDSLGHTPPAR 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 SVTPDSLGHT(1)PPAR 101.08 0.00020864 0 228650 252580 159360 39179 193830 208540 223810 191750 177000 224510 TRUE FALSE FALSE 212622.8157 232564.6409 221068.4598 91210.692 169518.034 182812.4551 167810.3708 148092.7109 192342.5025 168291.2347 1.263421807 1.381917729 1.3136065 0.54198124 1.00728974 1.086286255 0.997142668 0.879978753 1.14291456 1 17.36060051 -5.054818149 24.9999642 0.953579246 1.328943889 0.54100863 0.155668176 214.7997701 97959.65151 0.041934928 0.072633889 8.81E-06 5.054818149 0.375364642 SVTPSEGAGRRS(ph)PARPATER ddPTM_HeLa_A485_30min_R1 2 SVTPSEGAGRRSPARPATER 20 3 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 0 SVTPS(0.006)EGAGRRS(0.982)PARPAT(0.011)ER;SVTPSEGAGRRS(1)PARPATER ; 100.94 0.0010296 285476000 46358 107123 81313 41580 116341 116777 121842 227810 81412 100356 TRUE FALSE FALSE 56670.17717 119650.103 111394.0624 43851.41011 104757.6815 122891.2631 95809.46134 171939.2403 97750.64164 75339.09612 0.752201448 1.588154214 1.478569138 0.582053839 1.390482325 1.631175173 1.271709727 2.282204714 1.297475636 1 16.2011111 -5.992885726 24.94438367 1.556848266 1.140137223 0.156847991 0.420420173 301.9352518 1058648.927 0.128455986 0.145349622 1.02E-06 5.992885726 -0.416711043 SVTPSEGAGRRS(ph)PARPATER ddPTM_HeLa_A486_30min_R1 2 SVTPSEGAGRRSPARPATER 20 3 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 0 SVTPSEGAGRRS(1)PARPATER;SVT(0.001)PS(0.028)EGAGRRS(0.971)PARPATER ; 91.238 0.0032647 135704000 26713 28991 46716 16337 85401 30869 46342 47189 27631 31708 TRUE FALSE FALSE 24840.55665 26693.64758 64805.6863 38033.36163 74689.21025 27060.69663 34746.74144 36445.09483 30026.07733 23768.11042 1.045121224 1.123086653 2.726581338 1.600184489 3.142412625 1.138529574 1.461905925 1.533361054 1.263292572 1 14.53673959 SVTS(ph)MER ddPTM_HeLa_A486_30min_R1 1 SVTSMER 7 0 P16591-2;P16591 P16591-2 FER Tyrosine-protein kinase Fer 1 0 SVT(0.079)S(0.921)MER 102.46 0.0039937 928490000 1218600 1456500 1230300 416890 1565100 1418300 1472100 1548500 1287400 1466600 TRUE FALSE FALSE 1133182.433 1341081.636 1706705.109 970540.9885 1368790.564 1243324.566 1103765.01 1195940.354 1398992.869 1099353.814 1.030771366 1.219881733 1.55246208 0.8828286 1.245086474 1.130959433 1.004012535 1.087857556 1.272559253 1 20.06822434 -5.27840532 24.99965782 1.097409503 1.26292279 0.205156717 0.160480283 1358.272694 2001439.019 0.044933053 0.066847687 5.27E-06 5.27840532 0.165513287 SVTSS(ph)PVEKK ddPTM_HeLa_A485_30min_R1 2 SVTSSPVEKK 10 1 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4;F8VVB8 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.001)VT(0.052)S(0.217)S(0.73)PVEKK;SVT(0.01)S(0.23)S(0.76)PVEKK ; 78.903 0.0038481 229150000 515810 514020 320050 764770 651130 691460 1034890 1128140 479520 1198340 TRUE FALSE FALSE 630550.155 574130.1676 438449.8134 806547.4486 586301.2109 727663.7764 813777.2972 851461.8961 575755.2656 899615.8918 0.700910423 0.638194782 0.487374464 0.896546466 0.651723937 0.808860518 0.904583061 0.946472716 0.640001217 1 19.77894962 -5.894769933 0.933348346 0.868996568 0.624931012 0.355607284 0.127564392 0.641290296 1.216543991 0.064366645 0.087825629 1.27E-06 5.894769933 -0.244065556 SVTSS(ph)PVEKK ddPTM_HeLa_A486_30min_R1 2 SVTSSPVEKK 10 1 Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;G8JLP4;F8VVB8 Q9Y4F3-3 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.033)VT(0.197)S(0.157)S(0.613)PVEKK;S(0.002)VT(0.019)S(0.195)S(0.785)PVEKK ; 89.189 0.0014275 0 689860 554310 264170 290740 556690 683160 789180 768270 450520 1183010 TRUE FALSE FALSE 641504.3764 510384.4568 366463.6987 676857.4132 486864.7493 598878.6651 591718.8169 593351.6922 489571.4363 886776.5959 0.723411488 0.575550211 0.413253688 0.763278391 0.549027513 0.675343337 0.667269321 0.669110681 0.552079789 1 19.75821117 -14 0.416931763 7.861600555 0.613759285 0.575631495 0.097197671 648.191889 4.282300937 4069.513797 0.057121205 1.00E-14 14 -7.247841269 SVTVVEDDEDEDGDDLLHHHHGS(ph)HCSSSGDPAEYNLR ddPTM_HeLa_A485_30min_R1 2 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR 37 0 P02545;P02545-6;P02545-5;P02545-4 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVTVVEDDEDEDGDDLLHHHHGS(0.25)HCS(0.25)S(0.25)S(0.25)GDPAEYNLR;SVTVVEDDEDEDGDDLLHHHHGS(0.25)HCS(0.25)S(0.25)S(0.25)GDPAEYNLR ; 92.49 2.45E-05 2272670000 89190 125094 169687 21586.3 148223 112380 82922 83928 84389 39886 TRUE FALSE FALSE 109030.0078 139722.6551 232461.2826 22765.50491 133465.3977 118264.043 65205.03729 63344.52641 101325.0982 29943.15425 3.641233215 4.666263747 7.763420001 0.760290807 4.457292528 3.949618736 2.177627539 2.115492773 3.383915315 1 14.86993858 -6.588338255 0.30910309 1.056626421 5.484164274 0.292940489 1.638997857 2.523818713 0.596057089 2.375360776 4.018899686 2.58E-07 6.588338255 4.427537853 SVTVVEDDEDEDGDDLLHHHHGS(ph)HCSSSGDPAEYNLR ddPTM_HeLa_A486_30min_R1 1 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR 37 0 P02545;P02545-6;P02545-5;P02545-4 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVTVVEDDEDEDGDDLLHHHHGS(0.25)HCS(0.25)S(0.25)S(0.25)GDPAEYNLR 83.054 8.50E-05 985190000 232560 142230 248530 6459.1 230170 150040 99245 90030 143370 15851 TRUE FALSE FALSE 216258.7449 130959.1768 344767.4719 15037.11122 201299.9323 131529.5903 74412.85129 69532.13434 155797.427 11881.80643 18.20083051 11.02182379 29.01641884 1.265557667 16.94186264 11.0698311 6.262755731 5.851983431 13.11226773 1 13.53646657 -5.358979084 0.181980298 3.54E-12 28.13614038 0.313524206 6.723514616 13.54533417 0.706923112 22.4707454 94.31307091 4.38E-06 5.358979084 28.13614038 SVTVVEDDEDEDGDDLLHHHHGSHCS(ph)S(ph)SGDPAEYNLR ddPTM_HeLa_A485_30min_R1 1 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR 37 0 P02545;P02545-6;P02545-5;P02545-4 P02545 LMNA Prelamin-A/C;Lamin-A/C 2 0 SVTVVEDDEDEDGDDLLHHHHGS(0.417)HCS(0.546)S(0.54)S(0.497)GDPAEYNLR 121.55 2.89E-06 178350000 78032 96058 89649 48545 116240 74295 92301 92027 63975 90962 TRUE FALSE FALSE 95389.94919 107291.1475 122813.8957 51196.89043 104666.7375 78184.97132 72580.13732 69457.23396 76814.19569 68286.84743 1.396900762 1.571183201 1.798500009 0.749732816 1.532751055 1.1449492 1.062871403 1.017139267 1.124875413 1 16.05932011 -5.250156605 24.99201638 1.110611176 1.587093509 0.556171853 0.203516104 565.9677946 1253650.082 0.054420382 0.093175705 5.62E-06 5.250156605 0.476482334 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR ddPTM_HeLa_A485_30min_R1 1 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR 37 0 P02545;P02545-6;P02545-5;P02545-4 P02545 LMNA Prelamin-A/C;Lamin-A/C 0 0 66.828 0.000594 1038000000 99379 174100 251330 52703 207070 131920 145920 119230 107750 70092 FALSE FALSE TRUE 121485.5157 194459.4805 344307.4257 55582.03144 186453.3837 138827.1272 114742.9999 89988.65555 129374.4367 52619.35435 2.308761048 3.695588495 6.543360898 1.056303942 3.543437316 2.638328215 2.180623487 1.710181675 2.458685369 1 15.68330593 -6.493127466 0.581306998 1.450877781 3.877871378 0.265975979 1.314172399 1.186411744 0.850483813 1.161919308 1.090788658 3.21E-07 6.493127466 2.426993597 SVTVVEDDEDEDGDDLLHHHHVS(ph)GSR ddPTM_HeLa_A485_30min_R1 2 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVTVVEDDEDEDGDDLLHHHHVS(0.5)GS(0.5)R;SVTVVEDDEDEDGDDLLHHHHVS(0.5)GS(0.5)R ; 94.15 0.0010901 1314960000 9386.7 19614 8428 9768.9 18122 16863 13979 15979 18394 11653 TRUE FALSE FALSE 11474.73903 21907.68668 11545.86792 10302.55027 16317.71005 17745.9206 10992.27245 12060.1252 22085.50708 8748.121558 1.311680337 2.504273236 1.319811098 1.177687142 1.865281586 2.028540697 1.256529459 1.378595978 2.524599931 1 13.09475755 -9.953209838 6.896414392 0.999999958 1.695050517 0.161520748 0.482812006 3.04E-07 4.54E-08 0.457267745 0.110903712 1.11E-10 9.953209838 0.695050559 SVTVVEDDEDEDGDDLLHHHHVS(ph)GSR ddPTM_HeLa_A486_30min_R1 2 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVTVVEDDEDEDGDDLLHHHHVS(0.5)GS(0.5)R;SVTVVEDDEDEDGDDLLHHHHVS(0.5)GS(0.5)R ; 126.31 3.19E-06 820950000 4124.2 15760.1 19319.4 10685.4 36022 13322.9 31015.5 23012.3 6156 18673.5 TRUE FALSE FALSE 3835.114877 14511.21228 26800.38907 24876.15121 31503.78487 11679.25606 23255.09385 17772.90164 6689.607037 13997.53406 0.273985036 1.036697766 1.91465075 1.777180974 2.250666778 0.834379542 1.661370764 1.269716621 0.477913253 1 13.77288507 -7.621044949 5.834485922 0.750945334 1.427962134 0.17571947 0.553750587 0.359399623 17.53846266 0.407556979 0.147845547 2.39E-08 7.621044949 0.6770168 SVTVVEDDEDEDGDDLLHHHHVS(ph)GSRR ddPTM_HeLa_A486_30min_R1 1 SVTVVEDDEDEDGDDLLHHHHVSGSRR 27 1 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVTVVEDDEDEDGDDLLHHHHVS(0.5)GS(0.5)RR 55.994 0.0095601 130050000 50944 34758 53792 4731.3 78471 37616 48669 55496 30842 26441 TRUE FALSE FALSE 47373.08868 32003.64949 74621.703 11014.70551 68628.43547 32975.32037 36491.50143 42860.77227 33515.40939 19820.0015 2.390165746 1.614714787 3.764969594 0.555736865 3.462584777 1.66373955 1.841145241 2.16250096 1.690989246 1 14.27466945 -8.685801633 0.354878586 0.799825564 2.34270922 0.162123135 0.86349162 6.160551877 1.361362172 2.802656913 0.746210207 2.06E-09 8.685801633 1.542883656 SVTVVEDDEDEDGDDLLHHHHVSGSR ddPTM_HeLa_A485_30min_R1 4 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 196.19 1.07E-21 2839650000 109917 193896 232830 58976 236500 134831 143320 129513 178963 104086 FALSE FALSE TRUE 134367.6574 216570.4505 318963.5059 62197.70954 212953.2296 141890.5427 112698.5112 97749.73368 214879.2326 78139.27576 1.719591795 2.771595314 4.081986975 0.795985232 2.725303345 1.815867133 1.442277396 1.250968002 2.749951679 1 16.25376026 -5.270895015 24.99023353 1.732311474 2.849111801 0.305191278 0.809889572 829.018505 2191006.255 0.223909466 0.337077728 5.36E-06 5.270895015 1.116800326 SVTVVEDDEDEDGDDLLHHHHVSGSR ddPTM_HeLa_A486_30min_R1 3 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 216.89 2.74E-38 2159330000 496330 254040 481870 40727 472620 276335.2 213590 209110 358080 63462 FALSE FALSE TRUE 461539.8301 233908.9452 668462.9689 94814.51423 413339.5926 242243.7726 160147.5229 161500.2178 389118.6627 47570.70213 9.702186627 4.91707994 14.0519887 1.993128333 8.688952949 5.092289198 3.366515853 3.394951317 8.179796498 1 15.5377857 -5.832156899 0.825819166 4.088004211 8.858442076 0.245960234 3.332501541 0.996810803 1.488400152 1.766283477 2.720906541 1.47E-06 5.832156899 4.770437865 SVVLMSHLGRPDGVPMPDK(ac)YSLEPVAVELK ddPTM_HeLa_A485_30min_R1 2 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK 30 2 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 1 ; SVVLMSHLGRPDGVPMPDK(1)YSLEPVAVELK;SVVLMSHLGRPDGVPMPDK(1)YSLEPVAVELK 105.02 6.54E-08 28390000 9705.2 9455.7 12135.8 11840.1 15404.8 13118.4 17162.7 16272.3 11530.3 18703.2 FALSE TRUE FALSE 11864.08826 10561.46186 16625.33743 12486.89468 13871.04402 13805.25914 13495.74894 12281.49291 13844.32545 14040.83645 0.844970191 0.75219606 1.184070301 0.889326981 0.987907243 0.983221989 0.961178416 0.874698096 0.986004324 1 13.77734126 -4.705428851 24.99999999 0.974843499 0.798582383 0.447828512 0.081613117 77.01949141 34375.86597 0.019831582 0.052469426 1.97E-05 4.705428851 -0.176261116 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK ddPTM_HeLa_A485_30min_R1 3 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK 30 2 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ;; ;; 158.12 4.38E-26 71183000 80209 70146 50683 94310 94792 97436 148170 161428 65874 145178 FALSE FALSE TRUE 98051.21533 78348.96451 69432.7508 99461.91649 85354.17565 102537.5983 116512.2691 121837.5299 79094.30757 108987.7964 0.899653159 0.718878325 0.63706904 0.912596821 0.783153513 0.940817244 1.069039589 1.117900663 0.7257171 1 16.73380708 -6.32900468 3.385229601 0.990130987 0.782682924 0.353035188 0.121993933 0.269749425 6.106133107 0.045335894 0.040292886 4.69E-07 6.32900468 -0.207448062 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK ddPTM_HeLa_A486_30min_R1 5 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK 30 2 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ;;;; ;;;; 118.75 1.12E-09 136038000 74291.4 84255 59443.3 35621.1 98510 103183 128696 117069 85483 129733 FALSE FALSE TRUE 69083.9565 77578.32695 82461.33771 82927.72099 86153.95723 90453.33055 96494.89959 90414.9443 92892.73527 97247.01238 0.710396698 0.797745093 0.847957543 0.852753406 0.88592909 0.930139943 0.992265955 0.929745214 0.955224567 1 16.56936631 -2.487418319 0.28162604 0.994432212 1.62E-10 0.937257245 0.021539203 5.448844604 0.160319159 0.026185949 2.255979731 0.00325523 2.487418319 -0.994432212 SVVS(ph)DLEADDVK ddPTM_HeLa_A485_30min_R1 4 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 SVVS(1)DLEADDVK;SVVS(1)DLEADDVK;SVVS(1)DLEADDVK;SVVS(1)DLEADDVK ;;; 351.43 6.78E-87 1175460000 2110060 1380060 983810 3770390 1977590 1357270 2376490 1995260 1533670 5118770 TRUE FALSE FALSE 2579435.567 1541446.012 1347762.259 3976356.859 1780694.196 1428334.558 1868733.497 1505919.357 1841463.501 3842754.843 0.671246455 0.401130459 0.35072814 1.034767249 0.463390008 0.371695468 0.486300473 0.391885358 0.479204002 1 21.87370951 -10.31818809 5.479721958 1.000089362 0.513262941 0.35905474 0.193665937 0.00021526 2.68E-05 0.190912308 0.046294596 4.81E-11 10.31818809 -0.486826421 SVVS(ph)DLEADDVK ddPTM_HeLa_A486_30min_R1 4 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 SVVS(1)DLEADDVK;SVVS(1)DLEADDVK;SVVS(1)DLEADDVK;SVVS(1)DLEADDVK ;;; 312.87 1.52E-60 1319990000 2504320 2860130 1316710 1185820 1988270 3110130 3856910 3105840 2442120 4094860 TRUE FALSE FALSE 2328780.1 2633482.882 1826575.375 2760648.888 1738882.637 2726433.782 2891870.324 2398708.032 2653804.928 3069480.403 0.758688701 0.857957223 0.595076409 0.899386386 0.566507164 0.888239514 0.942136761 0.781470385 0.864577902 1 21.54956303 -6.406268827 19.02499006 0.884655633 0.741980978 0.347104412 0.108883678 4.393928629 701.2790505 0.036250521 0.031969782 3.92E-07 6.406268827 -0.142674655 SVVS(ph)DLEADDVKGSVPLS(ph)SSPPATHFPDETEITNPVPK ddPTM_HeLa_A486_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 2 0 S(0.014)VVS(0.986)DLEADDVKGSVPLS(0.396)S(0.33)S(0.274)PPATHFPDETEITNPVPK 263.46 1.17E-64 153400000 73671 67656 32361 38607 60303 75443 116600 97106 55932 115660 TRUE FALSE FALSE 68507.04334 62294.69216 44892.04586 89879.04709 52739.23544 66135.60971 87425.44673 74997.08361 60780.23079 86697.98318 0.790180357 0.718525274 0.517798041 1.036691325 0.60830983 0.762827545 1.008390778 0.865038388 0.701057032 1 16.40371081 -6.548680923 23.39262664 0.882837022 0.732933315 0.207012009 0.148465352 186.6671671 169232.0617 0.055542076 0.043024939 2.83E-07 6.548680923 -0.149903707 SVVS(ph)DLEADDVKGSVPLSS(ph)SPPATHFPDETEITNPVPK ddPTM_HeLa_A485_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 2 0 S(0.017)VVS(0.983)DLEADDVKGSVPLS(0.111)S(0.481)S(0.407)PPAT(0.001)HFPDETEITNPVPK 225.07 2.05E-39 177160000 138430 123620 62102 195890 181080 156980 273920 328760 132730 266980 TRUE FALSE FALSE 169223.2759 138076.2836 85076.11408 206590.9747 163051.0394 165199.2301 215394.7543 248131.0945 159367.6935 200426.7994 0.844314615 0.688911284 0.424474743 1.030755245 0.81351915 0.824237231 1.074680407 1.238013555 0.795141638 1 17.6127159 -5.982348797 0.992397696 1.031865113 0.68303235 0.345611679 0.174023881 0.581008789 1.23564096 0.089846641 0.109105608 1.04E-06 5.982348797 -0.348832763 SVVS(ph)FDK ddPTM_HeLa_A485_30min_R1 6 SVVSFDK 7 0 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK ;;;;; 154.05 0.00066954 7644750000 5480070 4608830 3277230 7572710 5161530 4510750 7249580 5772740 4443120 9568800 TRUE FALSE FALSE 6699092.665 5147792.577 4489613.754 7986387.972 4647629.95 4746925.895 5700648.009 4356966.464 5334813.429 7183474.261 0.93257001 0.716615998 0.624991973 1.111772338 0.646989156 0.660811986 0.793578121 0.606526356 0.742650873 1 22.77625034 -4.253267304 23.25903444 0.75489001 0.932570252 0.085269605 0.158092985 938.5023001 2670957.071 0.038160324 0.396022626 5.58E-05 4.253267304 0.177680243 SVVS(ph)FDK ddPTM_HeLa_A486_30min_R1 6 SVVSFDK 7 0 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK;SVVS(1)FDK ;;;;; 178.94 0.00070591 9709150000 6340840 6015070 2633690 2141710 3914130 6399540 7605130 6533980 5058570 10429680 TRUE FALSE FALSE 5896379.86 5538413.947 3653525.301 4986009.116 3423183.318 5610029.821 5702246.035 5046335.39 5497050.921 7818020.242 0.754203709 0.708416425 0.467321034 0.637758532 0.437858078 0.717576784 0.729372125 0.645474843 0.703125696 1 22.89837189 -8.902240883 0.553499698 1.025486965 0.615712557 0.545041227 0.100031666 2.857145119 1.13969325 0.269500555 0.047427209 1.25E-09 8.902240883 -0.409774408 SVVS(ph)FDKVK ddPTM_HeLa_A485_30min_R1 2 SVVSFDKVK 9 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 S(0.001)VVS(0.999)FDKVK;SVVS(1)FDKVK ; 136.5 0.00013426 7449000000 5475390 3619520 2509150 9504100 6318600 5040680 9373200 7555400 4644020 13581400 TRUE FALSE FALSE 6693371.616 4042791.378 3437388.999 10023284.92 5689497.998 5304602.21 7370539.248 5702426.304 5576032.217 10195806.93 0.656482774 0.396515098 0.337137514 0.983079122 0.558023317 0.520272917 0.72289906 0.559291319 0.546894646 1 23.28147262 -14 0.350239162 5.76146223 0.573173327 0.345765376 0.169717244 520.081965 4.275197895 1859.785271 0.134229559 1.00E-14 14 -5.188288903 SVVS(ph)FDKVK ddPTM_HeLa_A486_30min_R1 4 SVVSFDKVK 9 1 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 S(0.002)VVS(0.998)FDKVK;S(0.1)VVS(0.9)FDKVK;S(0.001)VVS(0.999)FDKVK;S(0.019)VVS(0.981)FDKVK ;;; 132.56 0.00012803 10887020000 6582580 6084610 2345720 3703797 5422440 8702620 11558030 10556890 5406240 13108820 TRUE FALSE FALSE 6121175.134 5602443.344 3254045.605 8622626.596 4742307.013 7628979.226 8666088.646 8153316.602 5874857.236 9826286.148 0.622938824 0.570148605 0.33115722 0.877506157 0.482614382 0.776384802 0.881929196 0.829745489 0.597871581 1 23.22821482 -6.131542585 1.055394833 0.822615418 0.546645494 0.338980039 0.161324451 0.612545577 1.445246793 0.082327865 0.084585383 7.39E-07 6.131542585 -0.275969924 SVVS(ph)FDKVKEPR ddPTM_HeLa_A485_30min_R1 3 SVVSFDKVKEPR 12 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 SVVS(1)FDKVKEPR;SVVS(1)FDKVKEPR;S(0.151)VVS(0.849)FDKVKEPR ;; 172.82 7.12E-11 5903090000 2228604 2301231 1519283 2854890 4496620 4046020 7850090 9207750 2685970 5177430 TRUE FALSE FALSE 2724349.271 2570339.947 2081329.004 3010845.412 4048920.724 4257863.351 6172854.142 6949534.875 3225019.542 3886791.985 0.700924897 0.661301134 0.535487624 0.774635078 1.041712739 1.095469829 1.588161694 1.787987344 0.829738137 1 21.89014847 -5.992134488 1.573639732 1.348353792 0.635609387 0.52621644 0.264569225 0.277977088 1.404473031 0.105089795 0.11756521 1.02E-06 5.992134488 -0.712744405 SVVS(ph)FDKVKEPR ddPTM_HeLa_A486_30min_R1 2 SVVSFDKVKEPR 12 2 Q15424;Q15424-4;Q15424-3;Q15424-2 Q15424 SAFB Scaffold attachment factor B1 1 0 SVVS(1)FDKVKEPR;SVVS(1)FDKVKEPR ; 156 3.70E-08 4053000000 5436200 3862800 2094580 3174800 5750200 5533100 9113200 9553700 3066400 10544200 TRUE FALSE FALSE 5055150.453 3556697.66 2905657.471 7391094.846 5028956.298 4850482.378 6832980.97 7378531.066 3332198.021 7903863.689 0.63957966 0.449994813 0.367624947 0.935124281 0.636265565 0.613684974 0.86451149 0.933534706 0.421591028 1 22.91412664 -5.253870724 24.94976771 0.760922204 0.482159306 0.349146211 0.178697507 650.6204607 2144738.691 0.04755272 0.08037304 5.57E-06 5.253870724 -0.278762898 SVVSDLEADDVKGSVPLS(ph)SSPPATHFPDETEITNPVPK ddPTM_HeLa_A486_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 SVVSDLEADDVKGS(0.001)VPLS(0.697)S(0.148)S(0.148)PPAT(0.005)HFPDETEITNPVPK 168.15 6.42E-15 613430000 260130 243860 113920 99292 251730 278360 395230 331360 210020 397060 TRUE FALSE FALSE 241896.2303 224535.6455 158032.8749 231156.7939 220155.6761 244018.7734 296339.2737 255916.5615 228224.7027 297633.5916 0.812731618 0.754402903 0.530964513 0.776648875 0.739686925 0.819863014 0.995651304 0.859837628 0.766797529 1 18.18317784 -6.350193051 2.693024499 0.894991101 0.713604125 0.449716375 0.094370775 0.279921662 3.96676372 0.037487083 0.032804151 4.46E-07 6.350193051 -0.181386976 SVVSDLEADDVKGSVPLSS(ph)SPPATHFPDETEITNPVPK ddPTM_HeLa_A485_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 SVVSDLEADDVKGS(0.003)VPLS(0.07)S(0.454)S(0.454)PPAT(0.02)HFPDETEITNPVPK 185.3 1.70E-21 1590900000 218060 273490 157560 262330 337050 293350 493060 611350 222770 451380 TRUE FALSE FALSE 266566.6947 305472.2765 215848.0006 276660.4236 303492.1185 308709.3524 387713.7031 461415.4539 267477.8956 338859.273 0.786658994 0.901472383 0.636984193 0.816446371 0.895628784 0.911025245 1.144173213 1.361672797 0.789348018 1 18.37032673 -6.412619629 1.937693366 1.09952582 0.793335456 0.403511812 0.150202884 0.313501119 2.330996149 0.063966937 0.052739209 3.87E-07 6.412619629 -0.306190365 SVVSDLEADDVKGSVPLSSS(ph)PPATHFPDETEITNPVPK ddPTM_HeLa_A486_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 SVVSDLEADDVKGS(0.002)VPLS(0.032)S(0.217)S(0.581)PPAT(0.082)HFPDET(0.039)EIT(0.047)NPVPK 74.966 0.00052639 96799000 143380 125580 55090 51891 109920 139540 187460 164600 112430 212390 TRUE FALSE FALSE 133329.8024 115628.5834 76422.32336 120804.8704 96132.80864 122324.9735 140555.5253 127124.1732 122175.5229 159206.1616 0.837466346 0.726282088 0.480021141 0.758795195 0.60382593 0.768343212 0.882852296 0.798487772 0.767404488 1 17.28053665 -6.510928966 5.267904685 0.843902625 0.677069362 0.38691682 0.106257296 0.203636535 17.61465543 0.039665373 0.032644073 3.08E-07 6.510928966 -0.166833263 SVWGSLAVQNS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SVWGSLAVQNSPK 13 0 P18615;P18615-3;P18615-4 P18615 NELFE Negative elongation factor E 1 0 SVWGSLAVQNS(1)PK;SVWGSLAVQNS(1)PK ; 201.3 1.80E-21 1359430000 853990 736300 545460 1329930 1110740 888710 1475280 1361270 730950 1740660 TRUE FALSE FALSE 1043957.129 822403.88 747248.3525 1402580.708 1000150.826 935241.4814 1160074.376 1027416.398 877644.9603 1306745.496 0.798898586 0.629352756 0.571839241 1.07333885 0.765375376 0.715702854 0.887758465 0.786240627 0.671626543 1 20.31754676 -11.71250993 2.163944899 9.061528927 0.768529652 0.215154636 0.13364441 4339526.299 276892.1214 172680767.2 0.035128658 1.94E-12 11.71250993 -8.292999275 SVWGSLAVQNS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SVWGSLAVQNSPK 13 0 P18615;P18615-3;P18615-4 P18615 NELFE Negative elongation factor E 1 0 SVWGSLAVQNS(1)PK;SVWGSLAVQNS(1)PK ; 220.25 2.42E-27 1743720000 1221520 997850 427080 740170 945410 1122180 1561220 1490890 831430 2045510 TRUE FALSE FALSE 1135897.756 918776.7319 592456.8136 1723153.166 826827.8622 983736.8411 1170586.243 1151446.893 903499.0218 1533300.982 0.740818515 0.599214859 0.386393031 1.123819254 0.53924694 0.641581042 0.763441918 0.75095947 0.589250925 1 20.54820949 -11.17020862 2.396352802 1.811928071 0.682612775 0.214049771 0.183005695 18068930.38 2665634.3 80146577.74 0.044812736 6.76E-12 11.17020862 -1.129315296 SVYATMGDHENRS(ph)PVKEPVEQPR ddPTM_HeLa_A485_30min_R1 6 SVYATMGDHENRSPVKEPVEQPR 23 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR ;;;;; 245.07 2.69E-49 4046040000 2217640 2171670 1553283 2524230 2906960 2561360 3849650 3922230 2087750 3847970 TRUE FALSE FALSE 2710946.367 2425627.915 2127907.019 2662122.293 2617532.855 2695468.849 3027140.829 2960296.943 2506742.275 2888741.896 0.938452262 0.839683157 0.73662068 0.921550761 0.906115171 0.933094387 1.047909761 1.024770315 0.867762634 1 21.46200988 -5.985506591 1.534373516 0.983591962 0.843581773 0.410079944 0.067496447 0.377833848 1.819956647 0.027711447 0.031234258 1.03E-06 5.985506591 -0.140010189 SVYATMGDHENRS(ph)PVKEPVEQPR ddPTM_HeLa_A486_30min_R1 5 SVYATMGDHENRSPVKEPVEQPR 23 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR;SVYATMGDHENRS(1)PVKEPVEQPR ;;;; 205.26 2.63E-29 3408760000 2028620 1675930 963115 540961 1743650 1837210 2562890 2218900 1501250 2357520 TRUE FALSE FALSE 1886424.214 1543123.203 1336058.921 1259384.547 1524945.158 1610553.71 1921627.815 1713704.908 1631379.559 1767181.647 1.067476123 0.873211424 0.756039382 0.712651441 0.862924963 0.911368513 1.087396883 0.969738969 0.923153294 1 20.75301891 -6.485835197 3.942868229 0.993838668 0.84379785 0.319507848 0.095463784 0.279831867 9.337656483 0.039009664 0.03236494 3.27E-07 6.485835197 -0.150040818 SVYFKPSLT(ph)PSGEFR ddPTM_HeLa_A485_30min_R1 1 SVYFKPSLTPSGEFR 15 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 SVYFKPS(0.001)LT(0.999)PSGEFR 189.55 5.32E-18 337280000 313540 312400 283980 285720 392220 318210 413720 414190 280390 383650 TRUE FALSE FALSE 383285.8913 348932.4625 389036.0194 301328.1601 353169.1996 334870.9836 325325.3422 312609.2531 336661.7011 288013.1156 1.330793185 1.211515878 1.350757998 1.046230688 1.226226101 1.162693521 1.129550443 1.085399366 1.168911008 1 18.13577499 -1 0.129080301 0.970807938 2.097968524 0.559245691 0.0716467 62.70765945 0.549747385 0.37805946 12.8495347 0.1 1 1.127160586 SVYFKPSLT(ph)PSGEFR ddPTM_HeLa_A486_30min_R1 1 SVYFKPSLTPSGEFR 15 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 SVYFKPS(0.006)LT(0.994)PSGEFR 195.48 1.05E-18 543000000 414690 395830 246170 167390 404580 390580 422550 414870 339630 445620 TRUE FALSE FALSE 385622.3725 364462.9892 341493.6167 389692.3794 353833.8038 342394.2107 316823.5207 320413.1575 369069.4019 334033.8515 1.154440997 1.09109597 1.022332363 1.166625411 1.059275287 1.025028479 0.948477285 0.959223612 1.104886227 1 18.34963479 -6.183601627 2.947061146 0.999710377 1.101754992 0.427477533 0.054370919 0.26484093 4.500652289 0.019581136 0.019153395 6.55E-07 6.183601627 0.102044615 SVYFKPSLT(ph)PSGEFRK ddPTM_HeLa_A485_30min_R1 2 SVYFKPSLTPSGEFRK 16 2 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 SVYFKPS(0.07)LT(0.924)PS(0.006)GEFRK;SVYFKPS(0.039)LT(0.891)PS(0.07)GEFRK ; 124.2 2.39E-05 893640000 490890 531480 336280 522050 686860 674130 828200 955980 428140 668830 TRUE FALSE FALSE 600086.7869 593631.9627 460683.9658 550568.2696 618473.8067 709426.4044 651248.3042 721524.4061 514063.7709 502102.9899 1.195146811 1.182291232 0.917508908 1.096524579 1.231766827 1.412910137 1.297041279 1.437004799 1.02382137 1 18.93762379 -5.810879112 4.634693542 1.270379407 1.090261519 0.138089769 0.152428617 0.304297877 13.85044786 0.047028206 0.05520661 1.55E-06 5.810879112 -0.180117888 SVYFKPSLT(ph)PSGEFRK ddPTM_HeLa_A486_30min_R1 2 SVYFKPSLTPSGEFRK 16 2 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 SVYFKPS(0.003)LT(0.985)PS(0.012)GEFRK;SVYFKPS(0.026)LT(0.922)PS(0.052)GEFRK ; 132.13 1.30E-05 735140000 1665720 1436880 801320 609480 1661470 1565430 1904400 1854200 1152510 2068260 TRUE FALSE FALSE 1548961.63 1323016.396 1111612.564 1418900.241 1453072.94 1372303.163 1427898.977 1432039.137 1252410.495 1550354.234 0.999101751 0.853363939 0.717005533 0.91521035 0.937252215 0.885154588 0.92101466 0.92368512 0.807822153 1 20.56416646 SWDSS(ph)SPVDRPEPEAASPTTR ddPTM_HeLa_A485_30min_R1 2 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SWDS(0.152)S(0.47)S(0.379)PVDRPEPEAASPTTR;SWDS(0.084)S(0.457)S(0.457)PVDRPEPEAAS(0.001)PTTR ; 119.48 1.35E-08 3352600000 251019 272118 248704 345670 368965 323403 420920 437320 292035 436500 TRUE FALSE FALSE 306857.3105 303939.833 340709.959 364553.0768 332229.5491 340335.881 330987.0034 330066.5843 350643.7458 327688.5832 0.936429666 0.927526464 1.039737045 1.11249856 1.013857565 1.038595479 1.010065716 1.007256893 1.070051762 1 18.32196588 -4.762266061 24.99283044 1.037802268 0.931978033 0.627539526 0.032199798 12.76355416 385934.5444 0.008542389 0.019638814 1.73E-05 4.762266061 -0.105824235 SWDSS(ph)SPVDRPEPEAASPTTR ddPTM_HeLa_A486_30min_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SWDS(0.095)S(0.452)S(0.452)PVDRPEPEAASPTTR 163.46 8.31E-14 2716800000 608290 646030 513150 216600 760030 626400 740170 740990 567330 668150 TRUE FALSE FALSE 565652.0122 594836.23 711855.4226 504255.7464 664699.9504 549121.1368 554971.6373 572282.7527 616506.6212 500840.8911 1.129404612 1.187675049 1.421320494 1.006818244 1.327167894 1.09639837 1.108079726 1.142643827 1.230943064 1 18.93399283 -6.335872405 24.99999282 1.12405732 1.212947634 0.151535838 0.11608343 293.9179456 98717.21662 0.039463481 0.034803524 4.61E-07 6.335872405 0.088890314 SWDSSS(ph)PVDRPEPEAAS(ph)PTTR ddPTM_HeLa_A485_30min_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 S(0.02)WDS(0.286)S(0.325)S(0.369)PVDRPEPEAAS(0.971)PT(0.022)T(0.008)R 62.858 0.016578 783710000 653320 538960 475050 489660 743850 423980 1006300 672800 498180 1852300 TRUE FALSE FALSE 798648.7801 601986.6837 650790.7635 516408.8859 669789.6822 446178.9372 791295.7843 507794.7451 598160.1564 1390555.699 0.574337857 0.432910874 0.468007692 0.371368717 0.481670517 0.320863765 0.569050046 0.36517397 0.430159077 1 20.4072301 -10.33330647 3.302035535 1.003484923 0.442637444 0.817506566 0.078518368 53466764.39 75796600.72 1832590.385 0.018528561 4.64E-11 10.33330647 -0.560847479 SWDSSS(ph)PVDRPEPEAAS(ph)PTTR ddPTM_HeLa_A486_30min_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 S(0.034)WDS(0.278)S(0.32)S(0.368)PVDRPEPEAAS(0.951)PT(0.035)T(0.014)R 57.838 0.026602 1010300000 3042500 1785500 789480 539630 1491500 1906500 2980300 2933100 1510900 4304000 TRUE FALSE FALSE 2829236.461 1644010.477 1095187.799 1256285.911 1304422.162 1671295.414 2234597.418 2265297.159 1641866.029 3226250.386 0.876942619 0.509573121 0.339461501 0.389395044 0.404315229 0.518030287 0.69262988 0.70214549 0.508908433 1 21.62142698 -8.845497789 0.492692508 1.037853406 0.500174022 0.427489658 0.156734745 3.27805741 1.124320278 0.447473595 0.087426853 1.43E-09 8.845497789 -0.537679385 SWDSSS(ph)PVDRPEPEAASPTTR ddPTM_HeLa_A485_30min_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SWDS(0.001)S(0.046)S(0.953)PVDRPEPEAASPTTR 194.52 3.20E-20 3607100000 483250 553390 515440 607060 765810 562430 756880 781510 585900 841420 TRUE FALSE FALSE 590747.2953 618104.1466 706122.7052 640222.1506 689563.2675 591877.9651 595166.4049 589843.4471 703484.7558 631669.4792 0.935215828 0.978524635 1.117867379 1.013539789 1.091652027 0.937005799 0.942211749 0.933784941 1.113691225 1 19.26881034 -6.277177762 24.80894719 0.97850487 1.028907272 0.081188757 0.068687766 1801.432554 2839646.814 0.024673259 0.021831469 5.28E-07 6.277177762 0.050402402 SWDSSS(ph)PVDRPEPEAASPTTR ddPTM_HeLa_A486_30min_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SWDS(0.003)S(0.062)S(0.935)PVDRPEPEAASPTTR 100.04 0.00020856 3344500000 281800 348830 222500 110780 341780 339990 365620 333890 225080 353430 TRUE FALSE FALSE 262047.2752 321187.4404 308657.9588 257901.4385 298910.7654 298045.4906 274138.0089 257870.5358 244590.1156 264928.8276 0.989123296 1.212353685 1.16505992 0.973474427 1.128268177 1.125002112 1.034760964 0.973357781 0.923229525 1 18.01524531 -7.066567217 2.697698266 0.959911676 1.102449365 0.415059767 0.070730692 0.274777724 3.908163648 0.038854912 0.020774187 8.58E-08 7.066567217 0.142537689 SWDSSSPVDRPEPEAAS(ph)PTTR ddPTM_HeLa_A486_30min_R1 3 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SWDSS(0.001)S(0.004)PVDRPEPEAAS(0.681)PT(0.157)T(0.157)R;SWDSSSPVDRPEPEAAS(0.969)PT(0.025)T(0.005)R;SWDSSSPVDRPEPEAAS(0.747)PT(0.169)T(0.084)R ;; 132.28 4.63E-07 1845870000 668450 783240 660300 235228 869810 644060 773410 815140 645810 756920 TRUE FALSE FALSE 621595.1069 721173.2099 915985.8434 547622.6718 760710.3191 564602.4255 579894.6377 629550.4164 701789.3308 567382.3053 1.095548982 1.271053403 1.614406785 0.96517404 1.34073677 0.995100517 1.022052736 1.109570056 1.236889703 1 19.11396163 -5.292280556 24.99906531 1.103167993 1.321408353 0.299543831 0.161772032 859.2520843 696485.8558 0.045398668 0.067344861 5.10E-06 5.292280556 0.21824036 SWEDS(ph)PER ddPTM_HeLa_A485_30min_R1 4 SWEDSPER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SWEDS(1)PER;SWEDS(1)PER;SWEDS(1)PER;SWEDS(1)PER ;;; 196.06 2.64E-06 3094440000 2375550 2747620 2793810 2452010 3762800 2525670 3201260 3084370 2627400 3408160 TRUE FALSE FALSE 2903982.902 3068930.258 3827356.579 2585957.097 3388162.42 2657910.176 2517284.649 2327923.421 3154695.08 2558568.435 1.135003021 1.199471633 1.495897678 1.010704683 1.324241468 1.03882708 0.983864498 0.909853882 1.232992261 1 21.28690539 -6.327913384 7.782870904 1.023526939 1.233269697 0.336016388 0.14024881 0.355859219 37.80460299 0.048316993 0.04260621 4.70E-07 6.327913384 0.209742758 SWEDS(ph)PER ddPTM_HeLa_A486_30min_R1 4 SWEDSPER 8 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SWEDS(1)PER;SWEDS(1)PER;SWEDS(1)PER;SWEDS(1)PER ;;; 208.75 8.56E-07 3636660000 2540840 3082590 2714850 987124 3714100 2883650 3193880 3289920 2692310 2588150 TRUE FALSE FALSE 2362740.237 2838314.342 3766112.626 2298074.558 3248242.945 2527894.582 2394737.443 2540877.034 2925681.599 1940060.394 1.217869425 1.463003085 1.941234736 1.184537639 1.674299911 1.302997881 1.234362317 1.309689658 1.508036352 1 20.88767013 -6.40176578 9.026277891 1.28604147 1.501567981 0.188894142 0.232373275 0.617245559 43.06526884 0.08039335 0.070823559 3.96E-07 6.40176578 0.215526511 SWEEPNWMGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 SWEEPNWMGSPR 12 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR ;;; 124.62 4.41E-05 177826000 191236 324674 276017 194974.4 407824 209183 259814 263570 317255 267573 TRUE FALSE FALSE 233775.7884 362641.8 378127.1743 205625.3578 367219.6106 220135.4984 204302.6164 198929.0442 380925.1685 200871.9754 1.163804896 1.805337949 1.882428714 1.023663741 1.828127641 1.095899505 1.017078744 0.990327515 1.896357955 1 17.61591678 -6.282240603 24.78605537 1.187899819 1.545639981 0.182913099 0.359558656 1260.819074 1502345.487 0.124671315 0.11006921 5.22E-07 6.282240603 0.357740163 QHEEFDLS(ph)PDQWR ddPTM_HeLa_A486_30min_R1 1 QHEEFDLSPDQWR 13 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 0 QHEEFDLS(1)PDQWR 105.9 0.00030389 40520000 30035 22157 14807 7072.8 19354 21007 14338 21047 16988 17825 TRUE FALSE FALSE 27929.7016 20401.19863 20540.66695 16465.83584 16926.44085 18415.36992 10750.48075 16255.05755 18460.53352 13361.50398 2.090311214 1.526863941 1.537302012 1.232334015 1.266806557 1.378240799 0.804586128 1.216558973 1.381620927 1 13.70579479 -1 0.49767884 1.138062532 30.47489216 0.741500977 0.166648306 53.68485919 0.575432779 0.092282315 1644.263227 0.1 1 29.33682962 up SWGHES(ph)PEER ddPTM_HeLa_A485_30min_R1 1 SWGHESPEER 10 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 SWGHES(1)PEER 101.72 0.0010484 572470000 234720 400400 393980 235540 469830 289500 381020 447530 334530 334400 TRUE FALSE FALSE 286932.6542 447223.297 539729.5969 248406.9538 423052.0755 304657.7723 299611.9644 337772.5658 401667.1025 251040.2342 1.142974771 1.78148056 2.149972488 0.989510524 1.685196307 1.213581454 1.193481855 1.345491757 1.600010866 1 17.93755908 -5.273145316 24.99284455 1.313315422 1.700476434 0.257026648 0.311169531 1021.576331 2181122.028 0.086358148 0.129284674 5.33E-06 5.273145316 0.387161012 SWGHES(ph)PEER ddPTM_HeLa_A486_30min_R1 4 SWGHESPEER 10 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 0 S(0.001)WGHES(0.999)PEER;SWGHES(1)PEER;SWGHES(1)PEER;SWGHES(1)PEER ;;; 152.31 2.26E-06 1618200000 1378541 1635124 1419922 176053.1 1894170 1337827 1328580 1512383 1350081 1039347 TRUE FALSE FALSE 1281912.395 1505550.819 1969753.825 409860.514 1656585.536 1172779.507 996155.2317 1168046.406 1467107.108 779087.7462 1.645401819 1.932453471 2.528282385 0.526077475 2.126314455 1.505324031 1.278617507 1.499248848 1.883108951 1 19.5714263 -7.575237635 0.063338464 1.78E-10 2.957345518 0.137767434 0.505756599 51.25310388 3.185308329 73.54693195 70.58198558 2.66E-08 7.575237635 2.957345518 SWKRDREK ddPTM_HeLa_A486_30min_R1 1 SWKRDREK 8 3 A0A3B3ISF0;Q659C4-9;Q659C4;H0Y9K3;D6R9W6;A0A3B3IT29;A0A3B3ISF8;G3V0E9;Q659C4-3 A0A3B3ISF0 LARP1B La-related protein 1B 0 0 63.486 0.012808 1007700000 782920 858420 391840 338550 740570 904760 1007000 915910 655230 1212000 FALSE FALSE TRUE 728041.351 790395.6729 543570.9418 788161.5094 647680.8051 793139.9101 755037.949 707377.2872 712025.864 908507.3112 0.801359925 0.869993739 0.598312127 0.867534581 0.712906541 0.873014339 0.831075259 0.778614854 0.783731573 1 19.7931386 -6.274361131 24.88797018 0.838062385 0.771453397 0.156344268 0.09339268 1740.611988 3352500.954 0.031700465 0.028134852 5.32E-07 6.274361131 -0.066608988 SWPS(ph)PK ddPTM_HeLa_A485_30min_R1 2 SWPSPK 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 SWPS(1)PK;S(0.003)WPS(0.997)PK ; 93.162 0.014659 1480160000 3464900 3337800 2252390 5350600 4446200 3573500 5784900 5377500 2772210 7207000 TRUE FALSE FALSE 4235655.051 3728126.675 3085642.791 5642889.73 4003520.716 3760602.934 4548908.857 4058659.693 3328567.119 5410427.535 0.782868826 0.68906323 0.570314041 1.042965587 0.739963837 0.695065761 0.840766987 0.750155079 0.615213326 1 22.36731117 -11.33205409 2.375562319 2.536085283 0.750218369 0.27341282 0.123468576 16740814.36 2334557.489 138082474.1 0.032338396 4.66E-12 11.33205409 -1.785866914 SWPS(ph)PK ddPTM_HeLa_A486_30min_R1 1 SWPSPK 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 SWPS(1)PK 114.89 0.0077871 952250000 589590 565390 286200 346270 533110 663500 806860 800020 435230 1061500 TRUE FALSE FALSE 548262.7856 520586.4373 397024.3047 806134.0595 466242.3727 581644.116 604975.0939 617872.9103 472956.0868 795693.4908 0.689037666 0.654254991 0.498966385 1.013121345 0.585957254 0.730990165 0.760311729 0.776521258 0.594394817 1 19.60185327 -11.45262756 2.257273951 4.113608489 0.703846763 0.315069295 0.132434778 6596019.463 537082.0928 105358612 0.032042719 3.53E-12 11.45262756 -3.409761726 SWQQTTFQNRPDS(ph)R ddPTM_HeLa_A485_30min_R1 2 SWQQTTFQNRPDSR 14 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 SWQQTTFQNRPDS(1)R;SWQQTTFQNRPDS(1)R ; 70.335 0.0049999 786260000 236940 222350 204397 306180 311260 232509 292300 255471 227530 424590 TRUE FALSE FALSE 289646.4856 248351.8983 280011.956 322905.8381 280269.8615 244682.8117 229847.7171 192816.3367 273193.184 318747.527 0.908701907 0.779149255 0.878475697 1.013045783 0.879284819 0.767638306 0.721096472 0.604918691 0.857083305 1 18.28205462 -6.25318788 5.298901783 0.760514059 0.89220097 0.151935296 0.109704319 0.260597992 25.07840319 0.03748002 0.035528257 5.58E-07 6.25318788 0.131686911 SWQQTTFQNRPDS(ph)R ddPTM_HeLa_A486_30min_R1 2 SWQQTTFQNRPDSR 14 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 SWQQTTFQNRPDS(1)R;SWQQTTFQNRPDS(1)R ; 95.666 0.00048727 1202560000 292320 360730 222540 151130 347090 355750 382660 389210 309240 489460 TRUE FALSE FALSE 271829.8775 332144.441 308713.4478 351838.2777 303554.7357 311861.182 286914.4206 300595.3794 336045.1722 366896.0302 0.740890757 0.905282188 0.841419428 0.958959075 0.827359008 0.849998791 0.782004702 0.819293082 0.915913895 1 18.48501177 -8.013772719 4.029255962 0.999724949 0.845081398 0.437520532 0.057037765 0.180324233 8.469993976 0.054847942 0.014413059 9.69E-09 8.013772719 -0.154643551 SWS(ph)PPPEVSR ddPTM_HeLa_A485_30min_R1 6 SWSPPPEVSR 10 0 Q9NR19;Q9NR19-2;F8WCJ4;C9JXD9;C9IYL0;B4DEH9;C9JY31 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 0 SWS(1)PPPEVSR;S(0.004)WS(0.996)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;S(0.083)WS(0.917)PPPEVSR;SWS(0.997)PPPEVS(0.003)R ;;;;; 171.67 2.29E-07 6420310000 2386590 3629070 3503150 2699180 3673090 3278350 3731160 3922190 2928970 3812200 TRUE FALSE FALSE 2917478.712 4053458.168 4799110.963 2846629.369 3307384.263 3449999.337 2933967.185 2960266.753 3516787.413 2861888.698 1.01942424 1.416357726 1.676903426 0.994668091 1.155664881 1.205497383 1.025185636 1.03437522 1.228834446 1 21.44853613 -5.292552368 24.99770283 1.09805833 1.375441589 0.367153904 0.167611704 703.0252073 564843.3909 0.047568525 0.070563208 5.10E-06 5.292552368 0.27738326 SWS(ph)PPPEVSR ddPTM_HeLa_A486_30min_R1 6 SWSPPPEVSR 10 0 Q9NR19;Q9NR19-2;F8WCJ4;C9JXD9;C9IYL0;B4DEH9;C9JY31 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 0 SWS(1)PPPEVSR;S(0.003)WS(0.997)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR;SWS(1)PPPEVSR ;;;;; 215.04 2.59E-15 5286200000 3663670 3965460 3300210 1152860 4383420 3372640 3817650 3835960 3411000 3934720 TRUE FALSE FALSE 3406865.652 3651222.508 4578139.695 2683916.342 3833610.59 2956557.967 2862433.591 2962595.646 3706668.226 2949440.501 1.155088787 1.237937333 1.552206153 0.909974736 1.29977553 1.002413158 0.970500537 1.004460217 1.256736057 1 21.49200988 -5.274745034 24.9990911 1.067030429 1.307363437 0.371377598 0.149893993 836.1701181 1571021.569 0.041803009 0.06242139 5.31E-06 5.274745034 0.240333008 SWSEESLKPSDNEQGLPVFSGS(ph)PPMK ddPTM_HeLa_A486_30min_R1 1 SWSEESLKPSDNEQGLPVFSGSPPMK 26 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 0 SWSEESLKPSDNEQGLPVFS(0.014)GS(0.986)PPMK 210.36 5.03E-29 77674000 104970 104190 42818 48929 78750 116440 131570 130480 79005 152770 TRUE FALSE FALSE 97612.14507 95933.60495 59398.27631 113909.1847 68872.44069 102074.8167 98649.79439 100772.5524 85853.21701 114515.3976 0.85239319 0.837735422 0.518692486 0.994706276 0.601425154 0.891363247 0.861454411 0.879991289 0.749708937 1 16.80518207 SWSTATS(ph)PLGGERPFR ddPTM_HeLa_A485_30min_R1 6 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SWSTAT(0.053)S(0.947)PLGGERPFR;SWSTAT(0.021)S(0.978)PLGGERPFR;SWSTAT(0.001)S(0.999)PLGGERPFR;SWSTAT(0.006)S(0.994)PLGGERPFR;SWSTATS(1)PLGGERPFR;SWSTAT(0.001)S(0.999)PLGGERPFR ;;;;; 252.83 9.21E-51 21342410000 2268880 3339200 2910160 2188060 3403540 2675950 3401670 3538650 2518810 3169530 TRUE FALSE FALSE 2773584.528 3729690.393 3986749.286 2307588.177 3064671.607 2816058.604 2674875.415 2670790.539 3024312.063 2379424.502 1.165653513 1.567475829 1.67550989 0.96980937 1.287988589 1.183504079 1.124169064 1.122452314 1.271026696 1 21.18218125 -5.263147593 24.99989185 1.149790184 1.47933935 0.494632977 0.153563507 125.9021615 1842600.916 0.04194036 0.066041626 5.46E-06 5.263147593 0.329549166 SWSTATS(ph)PLGGERPFR ddPTM_HeLa_A486_30min_R1 6 SWSTATSPLGGERPFR 16 1 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;H0Y8P3;Q9UPQ0-4;Q9UPQ0-5;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SWSTAT(0.004)S(0.996)PLGGERPFR;SWSTAT(0.028)S(0.972)PLGGERPFR;SWSTAT(0.02)S(0.98)PLGGERPFR;SWSTAT(0.006)S(0.994)PLGGERPFR;SWSTATS(1)PLGGERPFR;SWSTAT(0.002)S(0.998)PLGGERPFR ;;;;; 219.95 4.62E-34 20480280000 2962690 2865240 2427510 941995 3379150 2601180 2857720 2909020 2471520 2854570 TRUE FALSE FALSE 2755020.73 2638187.947 3367506.883 2193011.966 2955305.498 2280272.858 2142688.23 2246699.649 2685753.344 2139767.092 1.287532994 1.232932293 1.57377263 1.02488349 1.381134194 1.065664047 1.001365166 1.049973924 1.255161533 1 21.02902234 -6.274633594 23.86546031 1.072989537 1.296241954 0.381505487 0.143588613 469.1189477 848530.814 0.049094672 0.04358431 5.31E-07 6.274633594 0.223252417 SWSYNGYYS(ph)DLSTAR ddPTM_HeLa_A485_30min_R1 1 SWSYNGYYSDLSTAR 15 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 SWSYNGYYS(1)DLSTAR 93.51 0.00099259 119700000 82583 111430 104380 101390 142900 121340 121290 141830 110440 119560 TRUE FALSE FALSE 100953.3034 124460.7692 142994.5056 106928.679 128672.3742 127693.1748 95375.40065 107045.9701 132604.295 89755.89234 1.12475405 1.386658479 1.59314895 1.19132768 1.43358136 1.422671776 1.062608796 1.192634459 1.477388186 1 16.45371903 -6.74324487 24.99873804 1.19921068 1.366415619 0.203315074 0.168618174 416.8666716 572762.9049 0.063967255 0.049451067 1.81E-07 6.74324487 0.167204938 SWSYNGYYS(ph)DLSTAR ddPTM_HeLa_A486_30min_R1 2 SWSYNGYYSDLSTAR 15 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 SWSYNGYYS(1)DLSTAR;SWSYNGYYS(1)DLSTAR ; 176.29 8.89E-13 246400000 257120 296870 240590 107370 353440 281390 321520 332050 219168 294480 TRUE FALSE FALSE 239097.2158 273344.94 333752.8912 249962.7862 309108.2595 246674.9628 241072.2953 256449.4636 238165.6587 220740.2913 1.083160733 1.238310136 1.511970875 1.132384055 1.400325504 1.117489523 1.09210826 1.16177007 1.078940584 1 17.75199046 -6.399696172 7.586583612 1.097905136 1.276451754 0.367247768 0.120201972 0.318070046 18.33601036 0.04200206 0.036956042 3.98E-07 6.399696172 0.178546618 SWTS(ph)PK ddPTM_HeLa_A485_30min_R1 4 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 SWT(0.183)S(0.817)PK;SWT(0.224)S(0.776)PK;SWT(0.074)S(0.926)PK;SWT(0.002)S(0.998)PK ;;; 121.85 0.0059872 2444890000 9878480 9349940 7049300 16480600 13100060 11205600 17775800 16528600 9102000 21932800 TRUE FALSE FALSE 12075913.8 10443334.15 9657129.416 17380893.45 11795772.03 11792307.89 13977855.12 12474934.93 10928687.91 16465356.6 0.733413438 0.634261037 0.586512011 1.055603827 0.716399427 0.716189037 0.848925137 0.757647419 0.663738307 1 23.97293042 -11.61065498 2.208767646 6.61232045 0.748635494 0.274746706 0.123800451 4432876.061 373035.6086 124617513.4 0.032211909 2.45E-12 11.61065498 -5.863684956 SWTS(ph)PK ddPTM_HeLa_A486_30min_R1 2 SWTSPK 6 0 O75494-2;O75494 O75494-2 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.002)WT(0.113)S(0.885)PK;S(0.001)WT(0.054)S(0.945)PK ; 72.23 0.027031 145782000 829010 859030 466610 514290 841740 1016050 1271500 1221480 681280 1523540 TRUE FALSE FALSE 770900.68 790957.3343 647293.8882 1197293.111 736161.1203 890700.0814 953357.2514 943375.6687 740333.8989 1142035.667 0.675023296 0.692585492 0.566789555 1.048385042 0.644604316 0.779923173 0.834787633 0.826047466 0.648258124 1 20.12317628 -14 0.117245502 1.728820133 0.635092739 0.254682923 0.129400254 230.3372595 1.760556523 40.87916223 1.327299213 1.00E-14 14 -1.093727393 SWVIGS(ph)PEILR ddPTM_HeLa_A485_30min_R1 4 SWVIGSPEILR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR ;;; 190.1 8.38E-11 810171000 608888 753658 777061 687685 941440 659395 877330 835903 717790 929550 TRUE FALSE FALSE 744333.035 841791.7471 1064528.2 725251.4902 847706.928 693919.9026 689881.2784 630896.4786 861843.869 697830.2921 1.066639043 1.206298661 1.525482932 1.039294938 1.214775193 0.99439636 0.988608959 0.904082964 1.235033616 1 19.4125167 -5.967357582 1.678565542 1.017546283 1.243638532 0.273404726 0.147008514 0.462136464 2.654687694 0.056480443 0.064098244 1.08E-06 5.967357582 0.22609225 SWVIGS(ph)PEILR ddPTM_HeLa_A486_30min_R1 4 SWVIGSPEILR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR;SWVIGS(1)PEILR ;;; 170.95 3.21E-08 777825000 490923 574823 465008 187460 639280 503569 570777 556127 498899 522787 TRUE FALSE FALSE 456511.8328 529271.932 645071.5509 436416.3537 559095.5414 441443.7767 427962.5575 429509.0223 542143.967 391877.7324 1.164934353 1.350604763 1.646104123 1.113654381 1.426709137 1.126483442 1.092081846 1.09602814 1.383451832 1 18.58004407 -6.273484134 24.04656313 1.142640339 1.345354641 0.273970851 0.163297036 631.483501 1260711.326 0.056681875 0.05040392 5.33E-07 6.273484134 0.202714302 SWVIGS(ph)PEILRK ddPTM_HeLa_A485_30min_R1 1 SWVIGSPEILRK 12 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 SWVIGS(1)PEILRK 181.26 4.59E-13 95793000 56472 77043 67511 55610 101220 93491 113720 149980 73446 81478 TRUE FALSE FALSE 69034.00157 86052.50867 92486.12827 58647.83349 91142.1814 98386.0442 89422.79299 113197.1698 88185.93851 61167.03409 1.1286145 1.406844552 1.512025712 0.958814406 1.49005396 1.608481524 1.461944237 1.850623813 1.441723304 1 15.9004667 -5.969664461 24.98537121 1.527745881 1.274164648 0.147749215 0.244095539 323.7550967 266654.1744 0.072661405 0.082389524 1.07E-06 5.969664461 -0.253581234 SWWDAVCTLIHR ddPTM_HeLa_A485_30min_R1 2 SWWDAVCTLIHR 12 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 0 0 ; ; 188.27 6.75E-10 89067000 96232 96432 120250 113278 152596 89412 122855 99966 102824 147413 FALSE FALSE TRUE 117638.4764 107708.8836 164735.479 119466.0903 137403.0064 94093.47406 96606.02562 75449.18176 123459.8336 110665.652 1.063008027 0.973281968 1.488587254 1.079522762 1.241604815 0.850250031 0.872954018 0.681775965 1.115611135 1 16.75584799 -6.266108398 24.94544884 0.882281453 1.17107814 0.386887454 0.165706605 384.7838785 2055801.913 0.056754713 0.051686353 5.42E-07 6.266108398 0.288796686 SWWDAVCTLIHR ddPTM_HeLa_A486_30min_R1 2 SWWDAVCTLIHR 12 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 0 0 ; ; 182.71 1.42E-09 96793000 104894 139659 118324 37219 153196 131627 143132 140032 117140 121381 FALSE FALSE TRUE 97541.47227 128591.9122 164142.2216 86647.71294 133980.7292 115388.199 107318.8597 108149.7705 127293.7895 90986.40754 1.072044439 1.413309039 1.804030141 0.952314915 1.472535655 1.268191614 1.179504308 1.18863656 1.399041823 1 16.47336342 -13.51556931 0.164398067 1.53E-06 1.393178262 0.138084008 0.225692451 214.7817895 2.308883107 70.68651469 0.902165372 3.05E-14 13.51556931 1.393176735 SWWDAVCTLIHRK ddPTM_HeLa_A485_30min_R1 1 SWWDAVCTLIHRK 13 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 0 0 92.856 0.0032432 9238600 12787 23124 15364 7453.5 21465 21211 26303 39308 11318 10963 FALSE FALSE TRUE 15631.42404 25828.15065 21047.78295 7860.665832 19327.86923 22321.57516 20683.14917 29667.65137 13589.41879 8230.125859 1.899293438 3.138244918 2.557407178 0.955108824 2.348429363 2.712179078 2.513102415 3.60476278 1.651179948 1 13.00669878 -5.994150871 24.99311062 2.479008259 2.165584805 0 0.82652133 721.6816722 3083684.732 0.255966622 0.289419676 1.01E-06 5.994150871 -0.313423454 SWWDAVCTLIHRK ddPTM_HeLa_A486_30min_R1 1 SWWDAVCTLIHRK 13 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 0 0 80.469 0.0080008 3356500 15325 9095 7427.2 4537.1 12090 7270.5 11869 11122 6508.1 15350 FALSE FALSE TRUE 14250.79664 8374.279077 10303.21075 10562.59809 10573.55947 6373.539631 8899.250663 8589.763392 7072.227348 11506.26009 1.23852551 0.727801998 0.89544393 0.917987079 0.918939724 0.553919308 0.773426865 0.74652957 0.614641708 1 13.49013137 -6.147413709 10.62182709 0.724166444 0.924891923 0.279346044 0.160662181 0.608152728 53.11417756 0.05016165 0.050175451 7.12E-07 6.147413709 0.200725479 SY(ph)S(ph)PAHNR ddPTM_HeLa_A486_30min_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(0.538)Y(0.805)S(0.657)PAHNR 87.913 0.0025336 321190000 101820 76551 53309 32874 71715 91479 91681 81671 79983 81177 TRUE FALSE FALSE 94682.9438 70484.81997 73951.67246 76532.33336 62719.83598 80193.25107 68741.4441 63076.29617 86915.99084 60849.75083 1.556012022 1.158341965 1.215315946 1.257726323 1.030732832 1.317889556 1.129691464 1.03659087 1.42837053 1 15.89296373 -4.25956752 24.79812479 1.178497664 1.556012165 0.440081041 0.128887942 134.0588982 1775837.922 0.029665392 0.186769988 5.50E-05 4.25956752 0.377514501 SYADQSTLHAEDPLS(ph)ITFMDQHNFSPR ddPTM_HeLa_A485_30min_R1 1 SYADQSTLHAEDPLSITFMDQHNFSPR 27 0 H0Y6V4;A0A0G2JQF6;H0Y6P5;Q5TG12;E9PGC5;Q15262;Q15262-2;Q15262-3;Q15262-4 H0Y6V4 PTPRK Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase kappa 1 0 SYADQS(0.001)T(0.001)LHAEDPLS(0.898)IT(0.053)FMDQHNFS(0.047)PR 50.583 0.026123 46404000 17718 16266 20346 23362 30441 20816 25265 25658 21082 38443 TRUE FALSE FALSE 21659.30797 18168.1672 27872.83207 24638.2069 27410.18716 21905.89357 19866.92635 19365.33527 25312.96402 28859.86759 0.750499215 0.629530511 0.965799028 0.85371864 0.949768292 0.759043454 0.688392845 0.671012617 0.877099105 1 14.81677706 SYALVS(ph)LS(ph)FFRK ddPTM_HeLa_A485_30min_R1 2 SYALVSLSFFRK 12 1 P06213-2;P06213 P06213-2 INSR Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta 2 0 SY(0.002)ALVS(0.999)LS(0.999)FFRK;SY(0.002)ALVS(0.999)LS(0.999)FFRK ; 48.283 0.026575 930990000 158218 223428 221034 155628 272700 208005 284260 280160 197110 221560 TRUE FALSE FALSE 193413.0483 249555.961 302803.6746 164129.5636 245549.0305 218895.8202 223525.5288 211450.3207 236668.169 166329.1695 1.162833007 1.500373998 1.820508546 0.986775585 1.476283632 1.316039879 1.343874496 1.271276237 1.422890343 1 17.34368167 -12.70363268 0.226787734 2.59E-11 1.420677076 0.213130381 0.209566477 127.7255408 2.173434562 59.54702408 0.38294857 1.98E-13 12.70363268 1.420677076 SYALVS(ph)LS(ph)FFRK ddPTM_HeLa_A486_30min_R1 2 SYALVSLSFFRK 12 1 P06213-2;P06213 P06213-2 INSR Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta 2 0 SY(0.007)ALVS(0.996)LS(0.996)FFRK;SYALVS(1)LS(1)FFRK ; 50.04 0.024527 821824000 156837 176407 161335 54919.2 203666 150874.8 181427 172731 153464 160263 TRUE FALSE FALSE 145843.5362 162427.8669 223808.2327 127854.6731 178120.3112 132261.4012 136032.0457 133403.922 166766.3831 120132.1017 1.214026344 1.352077127 1.863017708 1.064283995 1.482703696 1.100966347 1.132353832 1.110476885 1.388191672 1 16.87426219 -6.038795053 1.517668835 1.154033366 1.426064317 0.218415682 0.218158379 0.611146113 2.86280567 0.088297348 0.095396335 9.15E-07 6.038795053 0.272030951 SYDY(ph)DLIIIGGGSGGLAAAK ddPTM_HeLa_A485_30min_R1 2 SYDYDLIIIGGGSGGLAAAK 20 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;A0A0B4J225;E9PIZ5;E9PLT3;E9PKI4;E9PQI3 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 1 0 S(0.209)Y(0.156)DY(0.635)DLIIIGGGSGGLAAAK;S(0.019)Y(0.015)DY(0.966)DLIIIGGGSGGLAAAK ; 131.53 8.93E-10 32173000 96835 102689 81096 106141 135711 104775 152274 165917 103648 156239 TRUE FALSE FALSE 118375.6117 114697.5853 111096.7851 111939.2141 122199.1363 110260.857 119739.4159 125225.5956 124449.2029 117291.4927 1.009242947 0.977884949 0.947185363 0.954367717 1.041841429 0.940058435 1.020870425 1.067644317 1.061024973 1 16.83973885 -6.975207853 7.89570401 1.047540251 0.978799733 0.443318798 0.032934503 0.16144988 41.14984949 0.013793197 0.009157471 1.06E-07 6.975207853 -0.068740518 SYDY(ph)DLIIIGGGSGGLAAAK ddPTM_HeLa_A486_30min_R1 2 SYDYDLIIIGGGSGGLAAAK 20 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;A0A0B4J225;E9PIZ5;E9PLT3;E9PKI4;E9PQI3 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 1 0 S(0.024)Y(0.015)DY(0.961)DLIIIGGGSGGLAAAK;S(0.003)Y(0.003)DY(0.994)DLIIIGGGSGGLAAAK ; 212.17 5.59E-27 61508000 205842 211847 142727 114442 236672 221803 247783 252927 171565 261852 TRUE FALSE FALSE 191413.5388 195059.4722 197994.7168 266426.7596 206986.3909 194439.201 185785.0726 195341.0435 186436.3923 196282.5548 0.975193842 0.993768765 1.008722945 1.357363418 1.054532794 0.990608672 0.946518517 0.995203286 0.949836793 1 17.58257243 -6.234873067 4.515544393 0.973401265 1.086193254 0.200479783 0.101759755 0.359504342 18.49887685 0.037823645 0.036399871 5.82E-07 6.234873067 0.11279199 SYELIRKIEAYMEDDR ddPTM_HeLa_A485_30min_R1 5 SYELIRKIEAYMEDDR 16 2 G3V588;G3V3C0;Q13572-2;Q13572 G3V588 ITPK1 Inositol-tetrakisphosphate 1-kinase 0 0 ;;;; ;;;; 66.285 0.010106 5710070000 1818922 1878340 1469626 2151810 2460540 2261660 3181690 3739740 1703910 2989520 FALSE FALSE TRUE 2223534.924 2097995.524 2013301.814 2269357.932 2215559.998 2380077.02 2501895.939 2822562.901 2045869.108 2244287.682 0.990753076 0.934815773 0.897078316 1.011170693 0.987199643 1.060504426 1.114783973 1.257665371 0.91158951 1 21.09782619 -6.097767637 1.656012179 1.09138332 0.948409192 0.2572226 0.087687825 0.434210015 2.386505447 0.034753352 0.03573926 7.98E-07 6.097767637 -0.142974128 SYELIRKIEAYMEDDR ddPTM_HeLa_A486_30min_R1 3 SYELIRKIEAYMEDDR 16 2 G3V588;G3V3C0;Q13572-2;Q13572 G3V588 ITPK1 Inositol-tetrakisphosphate 1-kinase 0 0 ;; ;; 66.285 0.010106 3613110000 1970960 1596670 1027427 915141 1897550 1949020 2425710 2275540 1258160 2586420 FALSE FALSE TRUE 1832805.882 1470144.054 1425274.25 2130494.497 1659541.585 1708569.729 1818771.701 1757449.217 1367218.322 1938763.597 0.94534779 0.758289487 0.735145972 1.098893387 0.85597934 0.881267696 0.938109063 0.906479376 0.705201152 1 20.88670547 SYELPDGQVIT(ph)IGNER ddPTM_HeLa_A485_30min_R1 2 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63261;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 SYELPDGQVIT(1)IGNER;SYELPDGQVIT(1)IGNER ; 133.47 5.49E-05 143009000 114801 226653 220146 259860 251500 263280 243950 278040 237998 334260 TRUE FALSE FALSE 140338.0864 253158.0967 301587.1664 274055.4938 226459.7769 277064.9337 191828.0896 209850.2541 285762.0156 250935.1336 0.559260413 1.008858716 1.201853093 1.0921368 0.902463412 1.1041297 0.764452896 0.836272909 1.138788385 1 17.93695495 -4.260844779 24.26749854 1.001505526 0.559260231 0.511333224 0.130802495 28.95904734 1181470.909 0.034381425 0.198254407 5.48E-05 4.260844779 -0.442245295 SYELPDGQVIT(ph)IGNER ddPTM_HeLa_A486_30min_R1 2 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63261;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 1 0 SYELPDGQVIT(1)IGNER;SYELPDGQVIT(1)IGNER ; 212.83 3.28E-25 136379000 208960 196756 155302 103464 243150 215370 193084 222080 226360 185715 TRUE FALSE FALSE 194312.9831 181164.338 215439.0935 240869.4208 212651.8597 188799.8391 144772.341 171517.232 245981.0671 139210.7552 1.395818755 1.301367396 1.547575065 1.730250083 1.527553381 1.356215896 1.039950834 1.232068828 1.766968843 1 17.08691115 -6.422749083 4.725196471 1.26944412 1.503055335 0.210662188 0.219472197 0.397214245 14.38519848 0.08240884 0.071475156 3.78E-07 6.422749083 0.233611215 SYELPDGQVITIGNER ddPTM_HeLa_A485_30min_R1 3 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63261;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;; ;; 348.24 7.66E-118 1369000000 728470 984070 980490 796480 1226810 967940 1214200 1317080 937840 1100810 FALSE FALSE TRUE 890515.6383 1099148.426 1343214.053 839989.6856 1104664.489 1018619.842 954776.2509 994064.0649 1126055.886 826398.3259 1.07758645 1.330046773 1.625383318 1.0164465 1.336721596 1.232601531 1.155346303 1.202887317 1.362606688 1 19.65647781 -5.290757861 24.99976802 1.201974474 1.342909936 0.156446527 0.165118188 1395.838788 1190223.888 0.045919755 0.068120061 5.12E-06 5.290757861 0.140935462 SYELPDGQVITIGNER ddPTM_HeLa_A486_30min_R1 4 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63261;P68133;P68032;P63267;P62736 P60709;P63261;P68133 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ;;; ;;; 298.62 1.67E-67 1349780000 973360 1089660 972230 418722 1480960 968920 1179100 1188810 1034690 1078240 FALSE FALSE TRUE 905132.4904 1003311.373 1348703.493 974805.977 1295204.187 849384.5017 884076.7088 918143.9145 1124377.762 808241.6858 1.119878505 1.241350688 1.66868836 1.206082282 1.602496147 1.0509041 1.093827161 1.135976937 1.391140524 1 19.62442724 -6.287533475 24.90891479 1.140334388 1.368422792 0.284406299 0.184933225 1015.882339 969737.9901 0.064771371 0.057140283 5.16E-07 6.287533475 0.228088404 SYESSEDCSEAAGS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 SYESSEDCSEAAGSPAR 17 0 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 SYESSEDCSEAAGS(1)PAR;SYESSEDCSEAAGS(1)PAR ; 304.09 6.48E-69 1656810000 328980 449300 574370 357000 616200 433720 464480 484970 431470 438580 TRUE FALSE FALSE 402160.466 501841.7266 786853.3645 376502.006 554848.9644 456428.9085 365240.0535 366030.3471 518062.0713 329250.0775 1.221443801 1.524196229 2.389835017 1.143513796 1.68519008 1.386268189 1.109308937 1.111709221 1.573460742 1 18.32882425 -6.486972276 3.909376873 1.209175753 1.606843522 0.224298977 0.344501633 0.35809265 11.74063236 0.131980971 0.109336147 3.26E-07 6.486972276 0.397667769 SYESSEDCSEAAGS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 SYESSEDCSEAAGSPAR 17 0 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 SYESSEDCSEAAGS(1)PAR;SYESSEDCSEAAGS(1)PAR ; 404.17 4.13E-153 1606360000 371400 614400 653580 133826 632490 492530 453210 497700 442270 352470 TRUE FALSE FALSE 345366.7779 565712.7064 906663.6795 311553.6912 553157.2065 431766.6563 339812.0644 384384.5747 480606.3197 264209.2178 1.307171569 2.141154314 3.431612595 1.179193117 2.093633262 1.634184681 1.286147649 1.454849221 1.819036912 1 18.01132128 -6.000380629 1.27079157 1.436628034 2.178236384 0.199042018 0.600454839 0.734746678 2.470194442 0.266798919 0.303194411 9.99E-07 6.000380629 0.74160835 SYESSEDCSEAAGS(ph)PARK ddPTM_HeLa_A486_30min_R1 1 SYESSEDCSEAAGSPARK 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 SYESSEDCSEAAGS(1)PARK 150.91 1.78E-08 481880000 92566 110520 71369 50995 108570 111980 127090 120970 94081 122690 TRUE FALSE FALSE 86077.60141 101761.9927 99004.98813 118718.9371 94952.13822 98165.04613 95290.73778 93427.77176 102236.0168 91967.62542 0.935955463 1.10649799 1.07652 1.290877487 1.032451776 1.067386982 1.036133502 1.015876743 1.11165224 1 16.48883847 SYGSLVQSACS(ph)PVR ddPTM_HeLa_A485_30min_R1 3 SYGSLVQSACSPVR 14 0 Q96S90 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 SYGSLVQS(0.001)ACS(0.999)PVR;SYGSLVQSACS(1)PVR;SYGSLVQSACS(1)PVR ;; 174.35 1.92E-12 337240000 553160 633890 583910 582270 715370 522470 656610 585910 565390 774110 TRUE FALSE FALSE 676208.5336 708017.9214 799922.6075 614077.9357 644145.251 549825.7213 516319.9095 442214.6538 678858.5869 581138.6234 1.163592483 1.218328799 1.376474692 1.056680645 1.108419274 0.946118016 0.888462561 0.760945213 1.168152588 1 19.14852282 -5.829001502 1.524342238 0.934402531 1.241821712 0.519520989 0.116953362 0.289254814 1.396301261 0.0438749 0.056475211 1.48E-06 5.829001502 0.307419181 SYGSLVQSACS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 SYGSLVQSACSPVR 14 0 Q96S90 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 SYGSLVQSACS(1)PVR;SYGSLVQSACS(1)PVR;SYGSLVQSACS(1)PVR ;; 217.69 1.28E-27 655230000 725970 874740 632200 223879 782380 715040 762680 758670 702760 797940 TRUE FALSE FALSE 675083.2519 805422.4167 877004.7709 521201.6262 684246.605 626825.6348 571849.3972 585937.4026 763675.8026 598130.6303 1.12865521 1.346566077 1.466242868 0.871384276 1.143975196 1.047974478 0.956061048 0.97961444 1.276770933 1 19.19010107 -5.259022535 24.99997511 1.039790262 1.317095852 0.487414586 0.128949651 178.742981 1848919.158 0.035050378 0.057214227 5.51E-06 5.259022535 0.27730559 SYGSLVQSACS(ph)PVRER ddPTM_HeLa_A485_30min_R1 1 SYGSLVQSACSPVRER 16 1 Q96S90 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 SYGSLVQS(0.001)ACS(0.999)PVRER 63.125 0.0097078 118770000 40476 67422 66729 51693 103780 77700 91504 108960 67456 60139 TRUE FALSE FALSE 49479.74656 75306.41641 91414.83393 54516.8577 93447.29881 81768.25185 71953.42288 82237.38916 80993.80046 45147.45408 1.095958733 1.668010255 2.024805956 1.207528947 2.069824328 1.811137605 1.593742645 1.821528829 1.793983783 1 15.46235701 -4.266342836 5.660081247 1.704582906 1.077329099 0.214241614 0.320157889 0.18227341 24.45164568 0.073620698 0.442311535 5.42E-05 4.266342836 -0.627253806 SYGSLVQSACS(ph)PVRER ddPTM_HeLa_A486_30min_R1 2 SYGSLVQSACSPVRER 16 1 Q96S90 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 SYGSLVQS(0.001)ACS(0.999)PVRER;SYGSLVQS(0.011)ACS(0.989)PVRER ; 69.986 0.0043089 386470000 258400 324720 370710 132936 572830 328050 395320 460550 273080 312050 TRUE FALSE FALSE 240287.4944 298988.0046 514258.84 309481.7262 500980.32 287578.5264 296406.7547 355692.8187 296750.7943 233910.6489 1.027261886 1.278214592 2.198526841 1.323076686 2.141759353 1.229437513 1.267179396 1.520635424 1.268650212 1 17.83559802 SYGSRS(ph)PFEHSVEHK ddPTM_HeLa_A485_30min_R1 4 SYGSRSPFEHSVEHK 15 1 O14646-2 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.011)YGS(0.011)RS(0.977)PFEHSVEHK;S(0.022)YGS(0.027)RS(0.95)PFEHS(0.002)VEHK;S(0.066)YGS(0.083)RS(0.818)PFEHS(0.033)VEHK;S(0.002)YGS(0.009)RS(0.981)PFEHS(0.008)VEHK ;;; 151.63 2.75E-08 4525050000 2120940 2957390 2296300 2002770 4407760 3039150 4711240 5354350 2760260 3444930 TRUE FALSE FALSE 2592735.786 3303231.035 3145796.927 2112176.254 3968907.938 3198275.195 3704645.087 4041187.267 3314218.863 2586172.35 1.002537896 1.277266395 1.21639106 0.816719061 1.534664903 1.236682928 1.432481902 1.562613283 1.281515079 1 21.30238699 -5.77825194 24.9921285 1.368782586 1.102314217 0.303609312 0.191142207 288.0382063 428171.4467 0.057395092 0.065249254 1.67E-06 5.77825194 -0.266468369 SYGSRS(ph)PFEHSVEHK ddPTM_HeLa_A486_30min_R1 4 SYGSRSPFEHSVEHK 15 1 O14646-2 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.16)YGS(0.208)RS(0.631)PFEHS(0.001)VEHK;S(0.257)YGS(0.192)RS(0.473)PFEHS(0.078)VEHK;S(0.019)YGS(0.024)RS(0.957)PFEHSVEHK;S(0.06)YGS(0.06)RS(0.88)PFEHSVEHK ;;; 170.22 2.03E-12 3690380000 2343220 2114570 1664440 269958 2944150 2178340 2884060 3000750 1823630 2023560 TRUE FALSE FALSE 2178972.378 1947003.772 2308955.743 628475.8669 2574867.254 1909598.559 2162437.684 2317544.731 1981703.717 1516847.405 1.436513898 1.283585788 1.522207004 0.414330318 1.697512384 1.258925949 1.425613201 1.527869398 1.306462147 1 20.53264453 SYIEGYVPSQADVAVFEAVSS(ph)PPPADLCHALR ddPTM_HeLa_A486_30min_R1 1 SYIEGYVPSQADVAVFEAVSSPPPADLCHALR 32 0 P24534;C9JZW3;F2Z2G2 P24534 EEF1B2 Elongation factor 1-beta 1 0 SYIEGYVPSQADVAVFEAVS(0.259)S(0.741)PPPADLCHALR 147.74 1.17E-09 233210000 117530 154460 126700 48126 167980 135680 145840 146340 145970 153180 TRUE FALSE FALSE 109291.7539 142220.0271 175761.6331 112039.7602 146910.382 118941.1811 109349.2895 113021.5766 158622.7971 114822.731 0.951830295 1.23860516 1.530721589 0.975762893 1.279453823 1.035867899 0.952331377 0.984313608 1.381458147 1 16.80904875 -6.27434231 24.15511323 1.062409872 1.20412283 0.096943939 0.188132375 1160.021752 2171626.506 0.066375943 0.058933786 5.32E-07 6.27434231 0.141712958 SYIS(ph)PHS(ph)SPSHTPTR ddPTM_HeLa_A485_30min_R1 1 SYISPHSSPSHTPTR 15 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 2 0 S(0.092)Y(0.002)IS(0.906)PHS(0.629)S(0.334)PS(0.036)HT(0.001)PTR 68.567 0.0034477 0 369490 556850 464880 403080 602610 440680 606540 691420 426890 564740 TRUE FALSE FALSE 451681.7758 621968.7635 636858.4573 425099.2397 542612.0325 463753.3234 476947.774 521848.1609 512562.9073 423960.7113 1.065385928 1.467043401 1.502163857 1.002685458 1.279863955 1.093859197 1.124981069 1.230888021 1.208986809 1 18.69357105 -5.26139105 25 1.148057742 1.357082291 0.321291937 0.138815419 5.121275922 2648678.559 0.037570228 0.060137453 5.48E-06 5.26139105 0.209024549 SYKYS(ph)PK ddPTM_HeLa_A485_30min_R1 3 SYKYSPK 7 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 0 SYKYS(1)PK;SYKYS(1)PK;SYKYS(1)PK ;; 114.89 0.0012404 7397420000 7312700 5357900 3218030 10952400 6311800 6539600 11270500 9897200 4659190 14283400 TRUE FALSE FALSE 8939384.886 5984459.797 4408513.21 11550701.88 5683375.03 6882003.344 8862465.603 7469896.182 5594246.696 10722811.25 0.833679217 0.558105487 0.411134087 1.077208356 0.530026585 0.641809614 0.826505792 0.696635986 0.521714555 1 23.35417986 -10.21165263 4.236489654 1.00013697 0.677408381 0.216343446 0.184180549 122414679.2 47.12578794 176144.4255 0.043324456 6.14E-11 10.21165263 -0.322728589 SYKYS(ph)PK ddPTM_HeLa_A486_30min_R1 3 SYKYSPK 7 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 0 S(0.002)YKY(0.001)S(0.998)PK;SYKYS(1)PK;S(0.014)Y(0.001)KY(0.018)S(0.967)PK ;; 78.513 0.0067808 9689990000 17336600 13938990 4831260 8506600 9365610 16930570 21990300 18515700 10359280 30306000 TRUE FALSE FALSE 16121393.87 12834413.67 6702053.258 19803794.7 8190887.863 14841848.41 16488094.35 14300079.3 11257230.73 22717180.34 0.709656464 0.564965083 0.295021352 0.871754082 0.360559178 0.653331452 0.725798453 0.629483021 0.495538203 1 24.43728044 -14 0.399778532 7.605581387 0.580969232 0.357715829 0.163955257 814.8089916 5.724436507 4697.310559 0.100091357 1.00E-14 14 -7.024612155 SYLEGS(ph)S(ph)DNQLKDSESTPVDDR ddPTM_HeLa_A485_30min_R1 1 SYLEGSSDNQLKDSESTPVDDR 22 1 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 2 0 S(0.001)Y(0.001)LEGS(0.998)S(1)DNQLKDSESTPVDDR 128.89 2.26E-06 133310000 88110 94572 78330 175830 148800 115980 164820 134330 116500 261330 TRUE FALSE FALSE 107709.7655 105631.3727 107307.5266 185435.1477 133984.9495 122052.5335 129604.8605 101385.3569 139880.4814 196185.2404 0.549020738 0.538426706 0.546970436 0.945204376 0.682951221 0.622129031 0.660624929 0.516783814 0.713002064 1 17.58185698 -8.025710838 22.64177509 1.000000007 0.637888309 0.467388861 0.117457036 681.014503 599723.5288 0.120063703 0.031000315 9.43E-09 8.025710838 -0.362111698 SYLEGS(ph)S(ph)DNQLKDSESTPVDDR ddPTM_HeLa_A486_30min_R1 1 SYLEGSSDNQLKDSESTPVDDR 22 1 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 2 0 S(0.007)Y(0.006)LEGS(0.992)S(0.995)DNQLKDSESTPVDDR 73.212 0.0066821 180050000 273850 235660 154040 154420 219140 290530 346940 364460 204230 416790 TRUE FALSE FALSE 254654.5292 216985.4433 213688.4133 359497.564 191653.4178 254687.3625 260131.9424 281480.4141 221932.8208 312423.0712 0.815095147 0.694524391 0.683971297 1.150675469 0.613441949 0.81520024 0.832627186 0.900959116 0.710359898 1 18.25314147 -13.99999996 0.26583253 2.289637046 0.789898565 0.142613179 0.142672893 414.6784571 4.054894018 293.3808011 0.17911409 1.00E-14 13.99999996 -1.499738481 SYLEGS(ph)SDNQLKDSESTPVDDR ddPTM_HeLa_A485_30min_R1 1 SYLEGSSDNQLKDSESTPVDDR 22 1 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 SYLEGS(0.537)S(0.462)DNQLKDSESTPVDDR 123.79 1.40E-06 518910000 79323 85123 62646 116610 122370 99115 126270 118040 88509 157780 TRUE FALSE FALSE 96968.12769 95077.39438 85821.36232 122980.109 110186.4131 104304.5081 99291.38297 89090.50492 106271.9444 118448.3497 0.81865326 0.802690747 0.724546712 1.038259371 0.930248614 0.88059064 0.838267339 0.752146443 0.897200718 1 16.85389857 -11.67906883 1.430720542 2.373405708 0.853368559 0.207610547 0.085790154 741987.221 33019.92802 3286259.817 0.024634871 2.09E-12 11.67906883 -1.520037149 SYLEGSS(ph)DNQLKDSESTPVDDR ddPTM_HeLa_A485_30min_R1 1 SYLEGSSDNQLKDSESTPVDDR 22 1 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 SYLEGS(0.124)S(0.876)DNQLKDSESTPVDDR 206.47 2.54E-27 540950000 230800 229140 184490 383730 311890 252210 394450 331630 238670 480170 TRUE FALSE FALSE 282140.6637 255935.9297 252740.5283 404692.1982 280837.1365 265415.3256 310172.5351 250297.2225 286568.8798 360472.4559 0.782696872 0.710001348 0.701136867 1.122671626 0.779080709 0.736298492 0.860461126 0.694358802 0.794981351 1 18.4595295 SYLEGSS(ph)DNQLKDSESTPVDDR ddPTM_HeLa_A486_30min_R1 3 SYLEGSSDNQLKDSESTPVDDR 22 1 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 SYLEGS(0.158)S(0.842)DNQLKDSESTPVDDR;SYLEGS(0.017)S(0.983)DNQLKDSESTPVDDR;SYLEGS(0.171)S(0.829)DNQLKDSESTPVDDR ;; 215.08 1.02E-28 1015100000 740230 706280 433100 331626 744640 826520 1015750 1040940 575180 1092480 TRUE FALSE FALSE 688343.6996 650311.8006 600807.9188 772042.0875 651240.3077 724552.3658 761598.6065 803940.6856 625037.0655 818915.8971 0.840554814 0.79411305 0.733662542 0.942761143 0.795246875 0.88477018 0.930008331 0.981713371 0.763249398 1 19.64335577 -5.961285679 0.833896797 0.919012618 0.797181843 0.258883174 0.0772761 0.878848437 1.349675324 0.043616606 0.057305841 1.09E-06 5.961285679 -0.121830776 SYLFQLLQGLAFCHSHR ddPTM_HeLa_A485_30min_R1 2 SYLFQLLQGLAFCHSHR 17 0 G3V5T9;P24941;E7ESI2;P24941-2 G3V5T9 CDK2 Cyclin-dependent kinase 2 0 0 ; ; 176.94 8.17E-14 111419000 86080 82400 100358 78494 115528 49470 114536 75079 58524 134785 FALSE FALSE TRUE 105228.199 92035.96322 137484.6004 82781.92846 104025.6267 52060.1727 90064.44793 56665.75753 70269.22999 101185.58 1.039952521 0.909575882 1.358737089 0.818119819 1.028067701 0.514501895 0.890091729 0.560018112 0.694458933 1 16.62664418 -5.941141517 1.963184039 0.717872921 1.062999823 0.355453244 0.191049538 0.330645057 2.591331291 0.065591908 0.075068657 1.15E-06 5.941141517 0.345126902 SYLFQLLQGLAFCHSHR ddPTM_HeLa_A486_30min_R1 2 SYLFQLLQGLAFCHSHR 17 0 G3V5T9;P24941;E7ESI2;P24941-2 G3V5T9 CDK2 Cyclin-dependent kinase 2 0 0 ; ; 176.81 8.24E-14 85851000 52752 60365 48561 25010 66237 51267 72465 60366 58971 69010 FALSE FALSE TRUE 49054.35721 55581.45755 67365.11971 58224.54394 57928.93782 44942.19878 54333.49054 46621.97958 64082.65376 51729.44682 0.948286909 1.074464565 1.302258652 1.12555899 1.119844525 0.868793338 1.050339679 0.901265767 1.238804157 1 15.65869814 -6.060290647 24.9972983 1.006547245 1.123365095 0.144827108 0.122888403 444.4175011 184260.2276 0.040456409 0.040456489 8.70E-07 6.060290647 0.11681785 SYLLGNSS(ph)PR ddPTM_HeLa_A485_30min_R1 6 SYLLGNSSPR 10 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SYLLGNS(0.006)S(0.994)PR;SYLLGNS(0.002)S(0.998)PR;SYLLGNS(0.123)S(0.877)PR;SYLLGNS(0.009)S(0.991)PR;SYLLGNS(0.01)S(0.99)PR;SYLLGNS(0.164)S(0.836)PR ;;;;; 138.2 2.81E-05 2680400000 3829000 4400880 3824660 2819050 4737110 3203500 3868260 4175300 2875900 3584840 TRUE FALSE FALSE 4680747.84 4915524.633 5239560.891 2973047.563 4265466.695 3371230.306 3041774.65 3151301.128 3453066.751 2691205.362 1.739275607 1.826514135 1.946919758 1.104727125 1.584965144 1.252684152 1.130264785 1.170962712 1.283092996 1 21.35982105 -5.260096536 24.99979053 1.238290307 1.836464287 0.77362853 0.15328632 56.60869395 1053877.174 0.042717951 0.06909515 5.49E-06 5.260096536 0.59817398 SYLLGNSS(ph)PR ddPTM_HeLa_A486_30min_R1 5 SYLLGNSSPR 10 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SYLLGNS(0.011)S(0.989)PR;SYLLGNSS(1)PR;SYLLGNS(0.013)S(0.987)PR;SYLLGNS(0.244)S(0.756)PR;SYLLGNS(0.115)S(0.885)PR ;;;; 158.86 9.71E-07 2437060000 4678740 4535390 3221190 1184976 3910040 3158670 3552130 3619270 2680550 3399990 TRUE FALSE FALSE 4350784.487 4175989.179 4468521.034 2758684.013 3419606.324 2768985.41 2663349.503 2795241.229 2912902.232 2548610.374 1.707120293 1.638535738 1.753316662 1.082426738 1.341753278 1.086468704 1.045020271 1.096770718 1.142937446 1 21.2812794 -5.262598714 24.99988783 1.123172672 1.693545405 0.900130791 0.089406312 29.95587058 645973.8214 0.02537561 0.040153146 5.46E-06 5.262598714 0.570372733 SYLYQILQGIVFCHSR ddPTM_HeLa_A485_30min_R1 2 SYLYQILQGIVFCHSR 16 0 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 0 0 ; ; 246.95 1.01E-33 128341000 112785 125613 162397 142018 219340 81313 157144 104119 105490 231618 FALSE FALSE TRUE 137873.6341 140302.3477 222474.4082 149776.0837 197501.7395 85570.42295 123568.9007 78583.652 126660.8754 173879.8952 0.79292453 0.806892295 1.279471718 0.861376662 1.135851498 0.492123732 0.710656632 0.45194214 0.728438876 1 17.40773161 -6.262167175 24.99995328 0.644505181 0.976516155 0.357796271 0.197738009 67.01301876 2301880.304 0.065388777 0.061106201 5.47E-07 6.262167175 0.332010974 SYLYQILQGIVFCHSR ddPTM_HeLa_A486_30min_R1 2 SYLYQILQGIVFCHSR 16 0 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 0 0 ; ; 215.45 1.14E-24 98573000 104061 132259 115770 38565 150837 117376 146794 156706 141668 119218 FALSE FALSE TRUE 96766.86127 121778.3152 160599.2444 89781.26897 131917.617 102895.3425 110064.5886 121027.4647 153947.8963 89365.03682 1.082826849 1.362706484 1.797114958 1.004657662 1.476165866 1.151404914 1.231629197 1.354304423 1.722685983 1 16.44742288 -5.306179057 24.99992499 1.293168844 1.409068019 0.052758684 0.259604436 1686.820587 942568.6381 0.072594078 0.107674944 4.94E-06 5.306179057 0.115899175 SYQNS(ph)PS(ph)SDDGIRPLPEYSTEK ddPTM_HeLa_A485_30min_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 S(0.003)Y(0.001)QNS(0.995)PS(0.548)S(0.453)DDGIRPLPEYSTEK 146.34 1.93E-09 118600000 194850 224570 174590 264850 277400 226990 315670 305110 190270 302270 TRUE FALSE FALSE 238193.7103 250831.508 239178.1063 279318.0849 249781.082 238874.8454 248224.5257 230281.2941 228455.4437 226919.6519 1.049683041 1.105375872 1.054021123 1.230911834 1.100746806 1.052684699 1.093887302 1.01481424 1.006767999 1 17.79182203 -7.186515835 1.255602628 0.996654311 1.107182031 0.417952694 0.049185468 0.484014295 1.368968319 0.041743243 0.016859394 6.51E-08 7.186515835 0.11052772 SYQNS(ph)PS(ph)SDDGIRPLPEYSTEK ddPTM_HeLa_A486_30min_R1 3 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 S(0.173)Y(0.115)QNS(0.708)PS(0.523)S(0.479)DDGIRPLPEY(0.001)S(0.001)T(0.001)EK;SYQNS(0.998)PS(0.861)S(0.142)DDGIRPLPEYSTEK;SYQNS(1)PS(0.862)S(0.138)DDGIRPLPEYSTEK ;; 263.59 2.17E-59 1845060000 2057344 2006024 1146563 787692 1995657 2008997 2234641 2216589 1577278 2234001 TRUE FALSE FALSE 1913134.81 1847059.352 1590542.9 1833786.784 1745343.09 1761147.376 1675510.186 1711920.072 1713997.727 1674592.609 1.1424479 1.102990269 0.949808862 1.09506442 1.042249369 1.051687059 1.000547941 1.022290474 1.023531167 1 20.67537873 -4.540857724 22.67174803 1.027339141 1.132583541 0.557590566 0.036076704 47.34966123 59708.54843 0.008893665 0.023548076 2.88E-05 4.540857724 0.1052444 SYQNS(ph)PSS(ph)DDGIRPLPEYSTEK ddPTM_HeLa_A485_30min_R1 3 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 SYQNS(0.991)PS(0.027)S(0.981)DDGIRPLPEYSTEK;SYQNS(1)PS(0.427)S(0.573)DDGIRPLPEYSTEK;S(0.021)Y(0.01)QNS(0.968)PS(0.459)S(0.542)DDGIRPLPEYSTEK ;; 262.26 2.56E-59 1415400000 1361870 1399470 1093230 1575500 1715180 1433490 1977080 1970320 1267300 1931070 TRUE FALSE FALSE 1664813.283 1563125.843 1497661.27 1661565.576 1544410.657 1508545.32 1554660.707 1487095.931 1521635.486 1449689.788 1.148392778 1.078248503 1.03309086 1.146152501 1.065338716 1.040598708 1.072409228 1.02580286 1.04962834 1 20.46731279 -1.000000001 0.095177717 0.956055001 1.412274847 0.492705746 0.032927493 128.3131391 0.873532844 0.509534812 7.638680513 0.1 1.000000001 0.456219845 SYQNS(ph)PSS(ph)DDGIRPLPEYSTEK ddPTM_HeLa_A486_30min_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 SYQNS(0.998)PS(0.46)S(0.542)DDGIRPLPEYSTEK 148 1.70E-09 280590000 292760 289610 208220 120400 286450 281510 358070 356950 238830 369050 TRUE FALSE FALSE 272239.0358 266660.2489 288848.3603 280297.2847 250520.77 246780.1584 268477.0987 275680.2772 259531.9767 276637.4779 0.984100339 0.963933921 1.044140377 1.013229613 0.9055923 0.892070591 0.970501541 0.996539873 0.938166364 1 18.0776371 -5.738069758 24.9984344 0.948386188 1.001734806 0.302656556 0.037748259 312.1012427 333852.5576 0.01198289 0.015460091 1.83E-06 5.738069758 0.053348618 SYQNS(ph)PSSDDGIRPLPEYSTEK ddPTM_HeLa_A485_30min_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 SYQNS(0.333)PS(0.333)S(0.333)DDGIRPLPEYSTEK 163.16 4.49E-14 308680000 153840 139400 124820 169070 212770 179080 257460 239010 176850 267530 TRUE FALSE FALSE 188061.1773 155701.6174 170996.1122 178305.866 191585.8717 188456.3519 202451.5677 180392.4227 212342.1728 200839.6945 0.936374543 0.775253208 0.851405956 0.887801918 0.953924333 0.938342156 1.008025671 0.898191083 1.057271937 1 17.61568491 -5.731594659 1.61744934 0.977104435 0.845481944 0.527182593 0.053607902 0.285723959 1.54892885 0.018353338 0.025403968 1.86E-06 5.731594659 -0.131622491 SYQNSPS(ph)SDDGIRPLPEYSTEK ddPTM_HeLa_A486_30min_R1 2 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 SYQNS(0.267)PS(0.366)S(0.366)DDGIRPLPEYSTEK;SYQNS(0.017)PS(0.492)S(0.492)DDGIRPLPEYSTEK ; 108.57 1.25E-07 0 317800 341470 183793 141604 307760 316560 388910 386480 245871 445020 TRUE FALSE FALSE 295523.8611 314410.6736 254962.5717 329661.2683 269157.8711 277506.0457 291600.6045 298486.9408 267183.2962 333584.0954 0.885905129 0.942522974 0.764312733 0.988240365 0.806866619 0.831892316 0.874144207 0.894787686 0.800947347 1 18.34769098 -10.02217136 4.295778141 1.000008018 0.866812501 0.282351116 0.064292336 81268091.95 141495314.4 9361.915013 0.015103873 9.50E-11 10.02217136 -0.133195517 SYS(ph)AGNASQLEQLSR ddPTM_HeLa_A485_30min_R1 1 SYSAGNASQLEQLSR 15 0 Q14678;Q14678-2 Q14678 KANK1 KN motif and ankyrin repeat domain-containing protein 1 1 0 S(0.014)YS(0.986)AGNASQLEQLSR 80.361 0.0044047 89939000 30350 41361 44676 40053 50586 39279 59128 59091 41871 53950 TRUE FALSE FALSE 37101.25279 46197.80916 61203.51152 42240.99397 45549.48022 41335.5877 46494.81977 44598.8396 50274.12564 40501.25788 0.916051865 1.140651219 1.511150881 1.042955113 1.124643594 1.020600097 1.147984586 1.101171715 1.241297882 1 15.3056791 SYS(ph)LSELSVLQAK ddPTM_HeLa_A485_30min_R1 4 SYSLSELSVLQAK 13 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 SYS(0.999)LS(0.001)ELSVLQAK;SYS(0.997)LS(0.002)ELSVLQAK;SYS(0.873)LS(0.127)ELSVLQAK;SYS(0.998)LS(0.001)ELSVLQAK ;;; 393.89 3.81E-125 7101880000 4055390 3678040 2855820 4037260 4412890 4503050 5669200 6015400 3485220 6247300 TRUE FALSE FALSE 4957497.515 4108154.783 3912306.659 4257805.291 3973527.177 4738822.735 4457929.107 4540113.718 4184671.686 4689963.083 1.057044038 0.875946081 0.83418709 0.907854756 0.847240609 1.010417918 0.950525415 0.968048924 0.892261114 1 22.16114514 -6.263056948 24.97874158 0.961395902 0.899155871 0.174972761 0.064260923 260.2617615 4018976.516 0.022090595 0.020495523 5.46E-07 6.263056948 -0.062240031 SYS(ph)LSELSVLQAK ddPTM_HeLa_A486_30min_R1 6 SYSLSELSVLQAK 13 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 SYS(0.885)LS(0.115)ELSVLQAK;SYS(0.999)LS(0.001)ELSVLQAK;S(0.01)YS(0.99)LSELSVLQAK;SYS(0.995)LS(0.005)ELSVLQAK;SYS(0.92)LS(0.08)ELSVLQAK;SYS(0.865)LS(0.135)ELSVLQAK ;;;;; 388.46 6.95E-125 9018518000 4113887 4591370 3373682 1746758 5390760 4562800 5582060 4770770 4439410 5287320 TRUE FALSE FALSE 3825524.765 4227533.12 4680062.021 4066540.9 4714600.614 3999888.127 4185369.547 3684569.816 4824221.633 3963340.657 0.965227341 1.066659035 1.180837689 1.026038701 1.189552204 1.00922138 1.056020642 0.92966266 1.217210947 1 21.91828554 SYS(ph)PAHNR ddPTM_HeLa_A485_30min_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.116)YS(0.884)PAHNR 90.149 0.0028739 82114000 29500 45883 39024 28109 41449 39763 38802 49675 36489 36172 TRUE FALSE FALSE 36062.17323 51248.61772 53460.60152 29644.52349 37322.19202 41844.92919 30511.63572 37492.12836 43812.0076 27154.9861 1.328012951 1.887263633 1.968721373 1.091678832 1.374413962 1.540966696 1.123610802 1.380671978 1.613405636 1 14.7289295 -5.26075369 24.99998358 1.324746132 1.743925748 0.392330504 0.240825344 63.65872276 2320930.531 0.065691016 0.10558713 5.49E-06 5.26075369 0.419179616 SYS(ph)PAHNR ddPTM_HeLa_A486_30min_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.013)YS(0.987)PAHNR 102.53 0.0013179 815040000 339840 356390 340780 82384 404210 320280 345670 360530 321440 349230 TRUE FALSE FALSE 316018.9709 328148.3584 472739.1424 191794.1155 353510.2127 280767.11 259179.7099 278445.1893 349302.678 261780.5349 1.207190485 1.253524669 1.805860556 0.732652317 1.350406793 1.072528598 0.990064865 1.063658875 1.334334037 1 17.9979983 -5.266438316 24.99996107 1.087816499 1.405325172 0.332754967 0.222863202 507.8178641 2539626.49 0.060789491 0.093396164 5.41E-06 5.266438316 0.317508673 SYS(ph)PDGK ddPTM_HeLa_A485_30min_R1 13 SYSPDGK 7 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;S(0.001)YS(0.999)PDGK;S(0.001)YS(0.999)PDGK ;;;;;;;;;;;; 152.86 0.00074835 1.11E+11 57957950 46792640 36282740 87975270 58550570 48585080 71845490 53925030 48703330 108662150 TRUE FALSE FALSE 70850496.02 52264632.21 49705235.38 92781136.23 52721069.67 51128919.66 56495114.14 40699831.84 58477641.6 81574675.78 0.868535429 0.640696781 0.609321887 1.137376708 0.646292114 0.626774415 0.692557017 0.498927289 0.716860239 1 26.28161801 -4.240098432 22.10407078 0.716177161 0.86853618 0.04445695 0.18322458 3421.830507 3543914.211 0.045551125 1.612169232 5.75E-05 4.240098432 0.15235902 SYS(ph)PDGK ddPTM_HeLa_A486_30min_R1 12 SYSPDGK 7 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 SYS(1)PDGK;SYS(1)PDGK;S(0.013)Y(0.001)S(0.986)PDGK;SYS(1)PDGK;S(0.001)YS(0.999)PDGK;S(0.081)YS(0.919)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK;SYS(1)PDGK ;;;;;;;;;;; 155.58 0.00056873 1.26E+11 99170820 93760320 51552970 42276750 74710680 113162490 121821800 106499760 86590070 136502600 TRUE FALSE FALSE 92219457.64 86330410.77 71515660.62 98422410.55 65339769.86 99201652.54 91340697.14 82252089.52 94095766.99 102321460.5 0.901271905 0.843717539 0.698931195 0.961894114 0.638573468 0.96950974 0.892683673 0.803859612 0.919609303 1 26.60853352 SYS(ph)PDGKES(ph)PSDK ddPTM_HeLa_A485_30min_R1 4 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 S(0.001)YS(0.999)PDGKES(0.998)PS(0.002)DK;S(0.003)YS(0.997)PDGKES(0.999)PS(0.001)DK;SYS(1)PDGKES(0.998)PS(0.002)DK;S(0.128)Y(0.02)S(0.851)PDGKES(0.516)PS(0.484)DK ;;; 182.82 4.33E-17 2633460000 4868800 3069510 1837020 11661600 4975500 4151950 8254700 6692100 3260840 15301500 TRUE FALSE FALSE 5951847.763 3428462.493 2516610.143 12298643.68 4480121.75 4369339.682 6491015.91 5050851.982 3915260.678 11487117.65 0.518132393 0.298461511 0.21908108 1.070646619 0.390012698 0.380368672 0.565069159 0.439697071 0.34083926 1 23.45351351 -10.27376182 4.36019352 1.000357528 0.4714783 0.33802652 0.222843422 308118025.4 670.8894896 1114192.712 0.054194257 5.32E-11 10.27376182 -0.528879228 SYS(ph)PDGKES(ph)PSDK ddPTM_HeLa_A486_30min_R1 4 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 SYS(1)PDGKES(0.969)PS(0.031)DK;S(0.007)YS(0.993)PDGKES(0.994)PS(0.006)DK;SYS(1)PDGKES(0.987)PS(0.013)DK;S(0.431)Y(0.087)S(0.482)PDGKES(0.989)PS(0.01)DK ;;; 247.34 1.06E-34 2899370000 4297130 3883440 1299274 4102520 2839350 5581170 7758110 6708360 2867050 10591390 TRUE FALSE FALSE 3995923.377 3575702.071 1802387.689 9550873.89 2483212.247 4892621.991 5816948.821 5181012.87 3115568.202 7939237.006 0.503313275 0.450383591 0.227022784 1.202996445 0.312777191 0.616258463 0.732683609 0.652583223 0.392426653 1 22.92056893 -14 0.240729134 3.375895426 0.531966061 0.193595867 0.260241906 294.8647303 2.942801945 344.4694082 0.403069016 1.00E-14 14 -2.843929365 SYS(ph)PDGKES(ph)PSDKK ddPTM_HeLa_A485_30min_R1 8 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 S(0.02)YS(0.979)PDGKES(0.928)PS(0.072)DKK;S(0.387)Y(0.052)S(0.561)PDGKES(0.994)PS(0.006)DKK;S(0.002)YS(0.998)PDGKES(0.934)PS(0.066)DKK;S(0.416)Y(0.018)S(0.566)PDGKES(0.987)PS(0.013)DKK;S(0.21)Y(0.015)S(0.775)PDGKES(0.943)PS(0.057)DKK;S(0.115)YS(0.885)PDGKES(0.91)PS(0.09)DKK;SYS(1)PDGKES(0.946)PS(0.054)DKK;S(0.055)YS(0.945)PDGKES(0.977)PS(0.023)DKK ;;;;;;; 163.45 4.55E-12 83760800000 7302100 3798830 1970115 19791690 6288140 5858460 14187880 11220430 3803850 24745140 TRUE FALSE FALSE 8926426.953 4243070.123 2698942.522 20872859.91 5662070.703 6165199.907 11156523.53 8468601.95 4567247.804 18576632 0.480519125 0.22840901 0.145286967 1.123608408 0.304795331 0.331879315 0.600567613 0.455873915 0.245859842 1 24.14698562 -10.57361985 2.983969349 1.029931601 0.439435856 0.29244284 0.263483894 173639336.8 190863014.4 41334920.11 0.066680129 2.67E-11 10.57361985 -0.590495745 SYS(ph)PDGKES(ph)PSDKK ddPTM_HeLa_A486_30min_R1 6 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 S(0.107)Y(0.003)S(0.89)PDGKES(0.91)PS(0.09)DKK;S(0.058)YS(0.942)PDGKES(0.999)PS(0.001)DKK;S(0.128)Y(0.003)S(0.87)PDGKES(0.629)PS(0.371)DKK;S(0.377)Y(0.004)S(0.619)PDGKES(0.728)PS(0.272)DKK;S(0.008)Y(0.001)S(0.99)PDGKES(0.996)PS(0.004)DKK;S(0.02)YS(0.98)PDGKES(0.942)PS(0.058)DKK ;;;;; 191.21 3.29E-17 47169100000 5307980 4169870 1028512 6422540 2935900 7401190 11828950 9953890 3251300 17120900 TRUE FALSE FALSE 4935918.012 3839434.315 1426779.391 14951997.7 2567652.046 6488106.428 8869221.596 7687606.539 3533125.302 12833715.2 0.384605544 0.299167798 0.111174307 1.165056062 0.200070829 0.505551691 0.691087612 0.599016451 0.275300273 1 23.61343554 -14 0.160672917 2.831734628 0.346682398 0.227156117 0.288718677 208.3158631 1.916958513 123.0678436 1.210072396 1.00E-14 14 -2.48505223 SYS(ph)PDGKESPSDK ddPTM_HeLa_A485_30min_R1 5 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.145)YS(0.604)PDGKES(0.089)PS(0.162)DK;S(0.002)YS(0.993)PDGKES(0.005)PSDK;S(0.001)YS(0.999)PDGKESPSDK;S(0.002)YS(0.998)PDGKESPSDK;SYS(0.998)PDGKES(0.002)PSDK ;;;; 177.88 3.41E-12 4709510000 3316842 2545746 1583807 5473110 4164891 3962646 7045740 7054080 2668012 7542130 TRUE FALSE FALSE 4054662.06 2843448.85 2169723.117 5772092.141 3750219.828 4170124.017 5540360.091 5324055.82 3203457.536 5662015.794 0.716116346 0.502197266 0.383206829 1.019441194 0.662347115 0.736508722 0.978513712 0.940311015 0.565780396 1 22.43288434 -5.257123503 24.9994671 0.834432793 0.530675861 0.433568314 0.161843508 357.2551884 2069372.114 0.044011159 0.07295983 5.53E-06 5.257123503 -0.303756932 SYS(ph)PDGKESPSDK ddPTM_HeLa_A486_30min_R1 3 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 SYS(1)PDGKESPSDK;SYS(1)PDGKESPSDK;SYS(1)PDGKESPSDK ;; 209.36 1.27E-21 5537000000 2740340 2468150 1049820 1936910 2421010 3243380 4929560 4510520 1886360 5221720 TRUE FALSE FALSE 2548256.317 2272564.805 1456338.419 4509224.366 2117344.351 2843244.752 3696131.948 3483573.06 2049871.204 3914167.324 0.651034079 0.58059981 0.372068514 1.15202647 0.54094375 0.726398367 0.944295847 0.889990839 0.523705563 1 21.900274 -2.940945607 0.136255996 1.004205859 1.98E-17 0.164345264 0.215716601 85.28269406 1.299173357 1.202299196 15.56783244 0.001145656 2.940945607 -1.004205859 SYS(ph)PDGKESPSDKK ddPTM_HeLa_A485_30min_R1 8 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 SYS(1)PDGKESPSDKK;S(0.006)YS(0.994)PDGKESPSDKK;SYS(0.985)PDGKES(0.014)PSDKK;S(0.002)YS(0.998)PDGKESPSDKK;S(0.001)Y(0.001)S(0.998)PDGKES(0.001)PSDKK;SYS(0.996)PDGKES(0.003)PS(0.001)DKK;S(0.014)YS(0.986)PDGKESPSDKK;S(0.098)YS(0.878)PDGKES(0.018)PS(0.006)DKK ;;;;;;; 174.87 1.19E-12 1.06E+11 6012430 4077928 2054763 10388490 6687940 7648670 15163990 15800110 4400030 14546110 TRUE FALSE FALSE 7349874.311 4554806.206 2814905.34 10955986.9 6022065.211 8049142.534 11924079.66 11925108.25 5283075.662 10920032.48 0.673063411 0.417105555 0.257774448 1.00329252 0.551469533 0.737098772 1.091945439 1.092039632 0.483796699 1 23.38047381 -5.712286603 1.030013974 0.900227624 0.467525581 0.304078797 0.239805875 0.651513414 1.469015308 0.107870198 0.175915825 1.94E-06 5.712286603 -0.432702043 SYS(ph)PDGKESPSDKK ddPTM_HeLa_A486_30min_R1 9 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.061)YS(0.939)PDGKESPSDKK;S(0.122)YS(0.835)PDGKES(0.043)PSDKK;SYS(0.994)PDGKES(0.005)PS(0.001)DKK;S(0.026)YS(0.966)PDGKES(0.008)PSDKK;S(0.001)YS(0.999)PDGKESPSDKK;S(0.431)Y(0.001)S(0.564)PDGKES(0.004)PSDKK;S(0.15)Y(0.003)S(0.842)PDGKES(0.005)PSDKK;S(0.023)YS(0.976)PDGKES(0.001)PSDKK;S(0.021)YS(0.979)PDGKESPSDKK ;;;;;;;; 175.51 9.74E-13 1.04E+11 11651733 8693414 2875393 9276730 8888251 13751896 21541160 19739570 6986051 25406690 TRUE FALSE FALSE 10835006.69 8004516.214 3988822.175 21596696.26 7773403.68 12055326.89 16151333.93 15245300.82 7591607.526 19044689.45 0.568925354 0.420301745 0.209445378 1.134000967 0.408166471 0.63300202 0.848075468 0.800501413 0.398620704 1 24.18288543 -8.954746126 0.074228852 1.619917652 1.45E-14 0.196179105 0.252538175 94.3838503 2.260059349 30.45738226 18.30103109 1.11E-09 8.954746126 -1.619917652 SYS(ph)PDHR ddPTM_HeLa_A485_30min_R1 7 SYSPDHR 7 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 0 SYS(1)PDHR;SYS(1)PDHR;S(0.011)YS(0.989)PDHR;SYS(1)PDHR;S(0.002)YS(0.998)PDHR;SYS(1)PDHR;S(0.176)YS(0.824)PDHR ;;;;;; 102.62 0.0028913 5901421000 1372402 1995253 1775939 1357171 2138470 1622864 1986437 2843186 1934257 2669826 TRUE FALSE FALSE 1677688.09 2228580.482 2432932.739 1431309.815 1925556.418 1707834.65 1562018.507 2145890.176 2322444.638 2004287.513 0.837049615 1.111906584 1.213864141 0.714124 0.960718662 0.85209065 0.779338542 1.070649875 1.158738266 1 20.93465805 -9.996904808 4.730692225 1.000000635 0.964650984 0.003770802 0.16086296 1.12E-06 2.37E-07 0.161250367 0.039108256 1.01E-10 9.996904808 -0.035349651 SYS(ph)PDHR ddPTM_HeLa_A486_30min_R1 4 SYSPDHR 7 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 0 S(0.002)YS(0.998)PDHR;SYS(1)PDHR;SYS(1)PDHR;SYS(1)PDHR ;;; 113.66 0.0019534 4235750000 780690 683070 786250 159189 820760 715720 802200 673060 752000 715520 TRUE FALSE FALSE 725967.6625 628941.0455 1090707.057 370600.037 717812.6275 627421.7433 601481.0752 519818.9308 817183.9655 536349.1347 1.353535627 1.172633654 2.033576612 0.690967903 1.338330914 1.16980098 1.121435715 0.969180142 1.523604519 1 19.0328129 -5.272753708 24.98389643 1.126612877 1.485187174 0.284296783 0.291663227 993.9379923 2194776.724 0.078915688 0.118251516 5.34E-06 5.272753708 0.358574297 SYS(ph)PER ddPTM_HeLa_A485_30min_R1 5 SYSPER 6 0 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8 B7Z8L1 PPHLN1 Periphilin-1 1 0 S(0.004)YS(0.996)PER;S(0.009)YS(0.991)PER;S(0.003)YS(0.997)PER;S(0.042)YS(0.958)PER;S(0.042)YS(0.958)PER ;;;; 126.57 0.0055522 24094800000 6293580 8793550 9049890 6483840 10110050 8302970 9476290 10774340 7972670 8636960 TRUE FALSE FALSE 7693565.158 9821879.179 12397820.91 6838035.761 9103457.923 8737700.67 7451603.227 8131916.221 9572711.739 6483924.823 1.186559895 1.514804605 1.91208585 1.054613671 1.404004237 1.347594383 1.149242693 1.254165716 1.476376115 1 22.62843593 -5.286790078 24.99988495 1.258874913 1.535515757 0.284039815 0.214714939 1010.705331 996716.391 0.060084882 0.08915909 5.17E-06 5.286790078 0.276640844 SYS(ph)PER ddPTM_HeLa_A486_30min_R1 4 SYSPER 6 0 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;F8VWU8 B7Z8L1 PPHLN1 Periphilin-1 1 0 SYS(1)PER;S(0.126)YS(0.874)PER;S(0.006)YS(0.994)PER;S(0.005)YS(0.995)PER ;;; 139.14 0.0050055 25325000000 6037290 6779010 5881210 2174910 7511860 6203030 6621100 6764600 5480110 6324160 TRUE FALSE FALSE 5614107.148 6241816.559 8158572.016 5063300.394 6569652.473 5437763.226 4964430.749 5224448.25 5955130.347 4740549.173 1.184273582 1.316686386 1.721018329 1.068083087 1.385842069 1.147074533 1.047226928 1.102076586 1.25621107 1 22.17662277 -6.161244288 1.426632017 1.10471645 1.363192215 0.292615569 0.170495215 0.537086316 2.208350718 0.075331328 0.073880427 6.90E-07 6.161244288 0.258475765 SYS(ph)PGRR ddPTM_HeLa_A485_30min_R1 5 SYSPGRR 7 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 1 0 SYS(1)PGRR;SYS(1)PGRR;SYS(1)PGRR;S(0.001)YS(0.999)PGRR;SYS(1)PGRR ;;;; 83.456 0.0057595 1254041000 517898 736985 752635 601507 883805 719180 854283 960652 678198 728454 TRUE FALSE FALSE 633102.6234 823168.9848 1031066.006 634365.8043 795810.271 756835.1527 671758.4582 725050.5908 814306.1178 546863.824 1.157697027 1.505254048 1.885416371 1.160006891 1.455225663 1.383955419 1.228383427 1.325833889 1.489047331 1 19.0608221 -12.63047259 0.208720412 2.35E-16 1.470733889 0.251981101 0.203285947 108.3793878 1.804653112 46.79915097 0.465843593 2.34E-13 12.63047259 1.470733889 SYS(ph)PGRR ddPTM_HeLa_A486_30min_R1 5 SYSPGRR 7 1 Q8IWX8;J3QK89 Q8IWX8 CHERP Calcium homeostasis endoplasmic reticulum protein 1 0 SYS(1)PGRR;S(0.003)YS(0.997)PGRR;SYS(0.999)PGRR;SYS(1)PGRR;S(0.121)Y(0.002)S(0.877)PGRR ;;;; 83.647 0.005665 1060002000 541565 629289 607644 243148 802333 562356 722140 715756 584895 658613 TRUE FALSE FALSE 503604.0901 579421.8478 842940.0301 566060.832 701696.9137 492978.2343 541452.934 552793.9836 635594.1695 493692.0179 1.020077441 1.173650427 1.70742082 1.146586964 1.421325215 0.998554193 1.09674233 1.119714242 1.287430516 1 18.91325179 -6.263268095 24.98774476 1.107736278 1.301935599 0.207408829 0.188358347 282.3053546 3857419.005 0.065688299 0.060864292 5.45E-07 6.263268095 0.194199321 SYS(ph)PSFQR ddPTM_HeLa_A485_30min_R1 4 SYSPSFQR 8 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.081)YS(0.901)PS(0.018)FQR;S(0.005)YS(0.99)PS(0.005)FQR;S(0.041)YS(0.958)PSFQR;S(0.006)YS(0.978)PS(0.017)FQR ;;; 133.83 0.00050546 1605820000 1871440 2045920 1984840 2315890 2521250 2211050 2816030 2739840 1972320 3158730 TRUE FALSE FALSE 2287735.372 2285172.547 2719114.912 2442401.207 2270225.497 2326817.159 2214362.186 2067889.944 2368146.533 2371316.743 0.964753181 0.963672421 1.146668795 1.02997679 0.957369151 0.98123423 0.933811222 0.872042906 0.998663101 1 21.17725695 -5.778278085 5.700641022 0.950331687 1.030704613 0.244114137 0.058705352 0.229488014 23.37910877 0.018968954 0.022564917 1.67E-06 5.778278085 0.080372927 SYS(ph)PSFQR ddPTM_HeLa_A486_30min_R1 3 SYSPSFQR 8 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.142)YS(0.831)PS(0.026)FQR;S(0.002)YS(0.499)PS(0.499)FQR;S(0.002)YS(0.997)PS(0.001)FQR ;; 102.06 0.0018849 1140250000 1665880 1724930 1368530 451469 2009330 1606630 1774720 1836350 1440100 1559470 TRUE FALSE FALSE 1549110.415 1588240.265 1898461.467 1051042.648 1757301.095 1408420.326 1330666.285 1418253.192 1564929.028 1168968.562 1.325194249 1.358668075 1.624048352 0.899119688 1.503292007 1.204840209 1.138325126 1.213251784 1.33872636 1 20.1568047 -12.37680454 0.049455538 1.08E-09 1.909882699 0.21074458 0.184173393 647.7772434 3.1978999 105.8195671 34.6389345 4.20E-13 12.37680454 1.909882698 SYS(ph)SER ddPTM_HeLa_A485_30min_R1 4 SYSSER 6 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 S(0.001)YS(0.5)S(0.5)ER;S(0.018)YS(0.823)S(0.16)ER;S(0.007)YS(0.497)S(0.497)ER;S(0.031)YS(0.546)S(0.423)ER ;;; 101.6 0.011539 6511210000 3841560 5176350 4331500 4321840 5098240 4571820 5693840 5874080 4462190 5505470 TRUE FALSE FALSE 4696101.769 5781679.104 5933902.099 4557931.176 4590641.325 4811193.426 4477304.57 4433452.67 5357710.603 4133057.65 1.136229438 1.398886634 1.435717234 1.102798839 1.110713112 1.164076051 1.0832911 1.072681062 1.296306768 1 21.97877806 -5.276607205 24.88568288 1.121681744 1.331138655 0.456221803 0.102452667 625.5182341 1026279.187 0.028203315 0.042012685 5.29E-06 5.276607205 0.209456911 SYS(ph)SER ddPTM_HeLa_A486_30min_R1 2 SYSSER 6 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 S(0.003)YS(0.898)S(0.098)ER;S(0.006)YS(0.731)S(0.263)ER ; 106.04 0.010078 4958600000 5119500 4735300 4697000 1766990 5046900 5246100 5475000 5029400 5165400 5559600 TRUE FALSE FALSE 4760649.487 4360057.582 6515804.19 4113642.019 4413870.742 4598889.52 4105097.091 3884315.411 5613141.031 4167439.973 1.142343865 1.046219648 1.56350283 0.987090887 1.05913241 1.103528677 0.985040485 0.932062714 1.346903871 1 21.99072999 SYS(ph)SERR ddPTM_HeLa_A485_30min_R1 1 SYSSERR 7 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 SYS(0.5)S(0.5)ERR 82.75 0.027859 726270000 614830 945710 609290 749840 675100 838440 907100 1299000 812970 912870 TRUE FALSE FALSE 751596.8124 1056302.558 834691.7257 790801.8605 607884.6736 882339.4219 713290.6747 980418.2132 976125.622 685308.3091 1.096728002 1.541353788 1.217979871 1.1539359 0.887023644 1.287507258 1.040831791 1.430623561 1.424359823 1 19.38639365 -4.980290398 24.88396585 1.180413341 1.334197417 0.078714002 0.192795276 555.6563474 701523.6438 0.050963375 0.106067354 1.05E-05 4.980290398 0.153784076 SYS(ph)SPDITQAIQEEEK ddPTM_HeLa_A485_30min_R1 4 SYSSPDITQAIQEEEK 16 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SYS(0.954)S(0.045)PDITQAIQEEEK;S(0.006)YS(0.912)S(0.082)PDITQAIQEEEK;SYS(0.5)S(0.5)PDITQAIQEEEK;SYS(0.931)S(0.069)PDITQAIQEEEK ;;; 366.13 1.30E-118 1274503000 811482 761250 600174 1164430 1057750 951040 1413530 1438220 759059 1554260 TRUE FALSE FALSE 991993.3713 850271.5655 822203.3379 1228039.862 952436.696 1000834.984 1111517.768 1085494.29 911395.1788 1166811.586 0.850174427 0.728713681 0.704658188 1.052474861 0.816272916 0.857752011 0.952611185 0.930308117 0.781098842 1 20.15414019 -5.235298394 24.99976628 0.905354106 0.757935249 0.401971616 0.084439043 774.5028422 740689.8884 0.022267089 0.038550747 5.82E-06 5.235298394 -0.147418858 SYS(ph)SPDITQAIQEEEK ddPTM_HeLa_A486_30min_R1 2 SYSSPDITQAIQEEEK 16 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SYS(0.884)S(0.116)PDITQAIQEEEK;SYS(0.992)S(0.008)PDITQAIQEEEK ; 363.78 1.49E-118 664130000 553751 599876 331292 284539 590705 696147 835050 803710 491919 1022340 TRUE FALSE FALSE 514935.9145 552339.641 459577.1347 662421.1718 516613.2708 610263.461 626111.6577 620722.7779 534558.935 766339.4097 0.671942364 0.720750667 0.599704425 0.864396589 0.674131154 0.79633574 0.817016129 0.809984153 0.697548538 1 19.54762397 -14 0.116653214 1.813215765 0.612756404 0.552596066 0.07374798 117.9315748 0.898198123 22.8415282 0.753997213 1.00E-14 14 -1.200459361 SYS(ph)SPDITQAIQEEEKR ddPTM_HeLa_A485_30min_R1 6 SYSSPDITQAIQEEEKR 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 S(0.082)YS(0.694)S(0.223)PDITQAIQEEEKR;S(0.004)YS(0.814)S(0.182)PDITQAIQEEEKR;SYS(0.751)S(0.249)PDITQAIQEEEKR;S(0.001)YS(0.859)S(0.14)PDITQAIQEEEKR;SYS(0.622)S(0.378)PDITQAIQEEEKR;SYS(0.905)S(0.095)PDITQAIQEEEKR ;;;;; 300.34 7.49E-69 16671810000 2705570 2414420 1816530 3696380 3407200 2630950 4108160 4062280 2476100 4712860 TRUE FALSE FALSE 3307414.712 2696765.416 2488540.039 3898303.88 3067967.205 2768702.474 3230418.055 3065999.461 2973030.558 3538030.736 0.934817971 0.762222156 0.703368689 1.101828721 0.867139783 0.78255467 0.913055396 0.866583614 0.840306594 1 21.75451515 SYS(ph)SPDITQAIQEEEKR ddPTM_HeLa_A486_30min_R1 5 SYSSPDITQAIQEEEKR 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 S(0.035)YS(0.821)S(0.144)PDITQAIQEEEKR;SYS(0.598)S(0.402)PDITQAIQEEEKR;SYS(0.766)S(0.233)PDITQAIQEEEKR;S(0.056)YS(0.726)S(0.217)PDITQAIQEEEKR;SYS(0.983)S(0.017)PDITQAIQEEEKR ;;;; 297.55 4.67E-68 7569320000 1777000 1818070 1025727 755360 1791070 1895800 2427440 2182920 1404270 2275920 TRUE FALSE FALSE 1652441.476 1673999.512 1422915.964 1758516.254 1566417.3 1661915.471 1820068.837 1685916.769 1525993.254 1706014.818 0.968597376 0.981233864 0.834058385 1.030774314 0.918173326 0.974150666 1.066854061 0.9882193 0.894478312 1 20.70219875 -6.514753926 24.9344635 0.991277068 0.946845114 0.090494254 0.061163793 917.5150195 2815800.765 0.022618598 0.018367327 3.06E-07 6.514753926 -0.044431954 SYS(ph)SSS(ph)SS(ph)PER ddPTM_HeLa_A485_30min_R1 1 SYSSSSSSPER 11 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 0 S(0.151)Y(0.064)S(0.636)S(0.223)S(0.304)S(0.583)S(0.131)S(0.908)PER 43.401 0.0115 0 93375 133860 142040 131030 176520 124110 145440 132090 120450 151230 TRUE FALSE FALSE 114145.9466 149513.7626 194586.5068 138187.8371 158945.049 130608.2077 114365.5559 99694.72039 144623.2102 113531.1442 1.005415276 1.316940507 1.713948258 1.217179992 1.400012747 1.150417435 1.007349628 0.878126624 1.27386376 1 16.79272859 -6.461546895 3.451686222 1.031846089 1.344399338 0.345327454 0.188799977 0.276251165 6.503215171 0.073734861 0.061522519 3.46E-07 6.461546895 0.312553249 SYSMIVNNLLKPISVEGSSK ddPTM_HeLa_A485_30min_R1 1 SYSMIVNNLLKPISVEGSSK 20 1 Q9HB71-3;Q9HB71 Q9HB71-3 CACYBP Calcyclin-binding protein 0 0 117.31 3.80E-06 13180000 21403 18706 19281 24581 25146 23002 30968 28256 21415 36758 FALSE FALSE TRUE 26164.02351 20893.50398 26413.84425 25923.79779 22642.37595 24206.34915 24351.43381 21326.1717 25712.79407 27594.90708 0.948146824 0.757150728 0.957199971 0.939441387 0.820527349 0.877203503 0.882461164 0.772829988 0.931794914 1 14.75211441 -8.001398037 24.97769157 1.000000016 0.868859112 0.284376797 0.065850942 48.61313635 868555.3561 0.061349802 0.015840451 9.97E-09 8.001398037 -0.131140904 SYSMIVNNLLKPISVEGSSK ddPTM_HeLa_A486_30min_R1 2 SYSMIVNNLLKPISVEGSSK 20 1 Q9HB71-3;Q9HB71 Q9HB71-3 CACYBP Calcyclin-binding protein 0 0 ; ; 277.71 3.11E-59 35593000 64221 69221 41855 26876.9 68293 79115 91462 85827 60847 94658 FALSE FALSE TRUE 59719.43954 63735.67586 58062.37692 62570.78148 59727.05513 69354.59568 68577.24021 66286.06569 66121.26695 70955.02068 0.841652063 0.89825463 0.818298358 0.881837267 0.841759393 0.977444514 0.966488905 0.934198384 0.931875804 1 16.11461715 -6.260382704 24.99999008 0.958169384 0.85798863 0.782031192 0.027842784 45.3674877 1073364.026 0.009157956 0.008679842 5.49E-07 6.260382704 -0.100180754 SYSPYDMLESIRK ddPTM_HeLa_A485_30min_R1 3 SYSPYDMLESIRK 13 1 P07355;H0YN42;P07355-2;A6NMY6;H0YM50;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;; ;; 225.23 3.74E-27 391930000 419629 460379 321875 428628 508301 592923 806493 873035 496378 807017 FALSE FALSE TRUE 512974.0233 514216.3193 440949.9568 452042.8623 457692.7677 623967.5314 634179.1821 658921.7974 595996.5116 605842.5139 0.846711829 0.848762356 0.72782934 0.746139222 0.755464922 1.029917045 1.046772334 1.087612345 0.983748248 1 19.20858329 -6.266188241 24.70953261 1.036158428 0.783191881 0.879871902 0.045160096 116.5315345 606341.0386 0.016845982 0.015344337 5.42E-07 6.266188241 -0.252966547 SYSPYDMLESIRK ddPTM_HeLa_A486_30min_R1 2 SYSPYDMLESIRK 13 1 P07355;H0YN42;P07355-2;A6NMY6;H0YM50;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 177.81 8.18E-13 319870000 285708 346360 249203 147478 454540 388520 473830 505190 320080 495930 FALSE FALSE TRUE 265681.3446 318913.1722 345701.0755 343336.2371 397527.3548 340588.3526 355272.7223 390169.2652 347824.7921 371745.9 0.714685339 0.857879461 0.929939175 0.923577737 1.069352358 0.916185902 0.955686996 1.049559027 0.935651993 1 18.50395731 -3.909103271 0.873593669 0.984672398 0.390835057 0.755086819 0.047163344 1.812548401 0.712638729 0.016089067 1.188253828 0.000123281 3.909103271 -0.593837342 SYSQQLFLALK(ac)LLK ddPTM_HeLa_A485_30min_R1 1 SYSQQLFLALKLLK 14 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 1 SYSQQLFLALK(1)LLK 80.967 0.0098661 2210300 6460.8 2521.2 1958.4 19478 4113.1 5160.4 8145.2 6224.4 4527.5 21451 FALSE TRUE FALSE 7897.982671 2816.032408 2682.893656 20542.03382 3703.585322 5430.590565 6404.91148 4697.856141 5436.127721 16103.66048 0.490446423 0.174869087 0.166601479 1.2756127 0.229984067 0.33722709 0.397730161 0.29172598 0.337570935 1 13.97510104 -10.12376103 4.292964274 1.000101443 0.411148657 0.251684471 0.304525548 833957472.6 2118142856 1275001.566 0.076718927 7.52E-11 10.12376103 -0.588952786 SYSQQLFLALK(ac)LLK ddPTM_HeLa_A486_30min_R1 2 SYSQQLFLALKLLK 14 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 1 ; SYSQQLFLALK(1)LLK;SYSQQLFLALK(1)LLK 93.958 0.0037539 21987400 12009.1 33276.8 20013.7 47132 34932.4 60641 64379 68181 28162.5 77553 FALSE TRUE FALSE 11167.32411 30639.82518 27763.54063 109725.6779 30550.85266 53159.72997 48270.69327 52657.67468 30603.64818 58133.22401 0.192098826 0.527062204 0.477584739 1.887486541 0.525531711 0.914446616 0.830346056 0.905810327 0.526439892 1 15.8270753 -5.029794297 24.99941578 0.935053438 0.395265627 0.321688916 0.362892611 785.0977748 658749.6138 0.096547393 0.167560811 9.34E-06 5.029794297 -0.539787811 SYSSSHSS(ph)PAK ddPTM_HeLa_A485_30min_R1 2 SYSSSHSSPAK 11 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 SYSSSHS(0.123)S(0.877)PAK;SYSSSHS(0.006)S(0.994)PAK ; 177.42 3.31E-09 725090000 605710 942560 539810 422110 831870 718100 1003250 1237700 841320 1018640 TRUE FALSE FALSE 740448.0998 1052784.193 739508.1824 445168.8005 749046.1019 755698.6056 788897.4417 934152.1344 1010165.207 764711.7947 0.968270798 1.376707147 0.967041685 0.582139315 0.979514252 0.988213613 1.03162714 1.221574116 1.320975058 1 19.5445566 -7.147808414 3.635985111 1.203536326 0.97868157 0.179302169 0.192872985 0.430443057 10.26203431 0.107936379 0.058206758 7.12E-08 7.147808414 -0.224854756 SYSSSHSS(ph)PAK ddPTM_HeLa_A486_30min_R1 2 SYSSSHSSPAK 11 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 SYSSSHS(0.097)S(0.903)PAK;SYSSSHS(0.019)S(0.981)PAK ; 107.17 0.00049035 451740000 685620 360450 440700 24660 450910 660960 586280 430980 641150 305550 TRUE FALSE FALSE 637561.5785 331886.6293 611350.8424 57409.72625 394352.6632 579417.4753 439586.543 332855.2622 696725.3982 229038.2912 2.783646242 1.449044295 2.669208014 0.250655582 1.721776133 2.529784309 1.919270968 1.453273426 3.04196034 1 17.80522929 SYSSSSSS(ph)PER ddPTM_HeLa_A485_30min_R1 2 SYSSSSSSPER 11 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 SYSSSSS(0.007)S(0.993)PER;SYSSS(0.001)S(0.001)S(0.078)S(0.919)PER ; 139.52 8.34E-06 1433220000 1425270 2072010 2029350 1531250 2356250 2053230 2319580 2639850 1885930 2246860 TRUE FALSE FALSE 1742316.394 2314313.545 2780091.013 1614898.31 2121653.477 2160733.948 1823982.784 1992422.648 2264418.852 1686759.152 1.03293727 1.372047421 1.648184929 0.957397094 1.257828347 1.280997317 1.081353423 1.18121348 1.342467209 1 20.68582256 -5.278148151 24.99211154 1.171048487 1.35315569 0.193968204 0.179442458 1388.452361 2076772.286 0.050474775 0.075099538 5.27E-06 5.278148151 0.182107203 SYSSSSSS(ph)PER ddPTM_HeLa_A486_30min_R1 2 SYSSSSSSPER 11 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 SYSSSSS(0.003)S(0.997)PER;SYSSSSSS(1)PER ; 183.39 1.66E-10 3417900000 4605100 4605300 4156600 1493830 5436900 4521700 4606500 5112900 4034600 4870000 TRUE FALSE FALSE 4282306.271 4240359.256 5766146.838 3477711.734 4754953.305 3963858.627 3453904.977 3948804.284 4384322.377 3650520.302 1.173067376 1.161576681 1.579541096 0.952661935 1.302541258 1.085833881 0.946140465 1.081709991 1.20101301 1 21.79967067 -5.990661372 1.298110875 1.062219387 1.259555975 0.205396772 0.160155364 0.707853992 2.4791046 0.068667127 0.078505241 1.02E-06 5.990661372 0.197336589 SYSVEKS(ph)PQDEGLHLLKPLSIPK ddPTM_HeLa_A485_30min_R1 1 SYSVEKSPQDEGLHLLKPLSIPK 23 2 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 SYSVEKS(1)PQDEGLHLLKPLSIPK 165.48 1.12E-14 140490000 59928 49267 30800 82302 74270 69809 100940 119430 50508 127990 TRUE FALSE FALSE 73258.77685 55028.34708 42194.20169 86797.94986 66875.41802 73464.09129 79373.3444 90139.60524 60644.49231 96084.44848 0.762441561 0.572708154 0.439136638 0.903350659 0.69600668 0.764578373 0.826078992 0.938128976 0.63115825 1 16.55201533 -5.270970606 24.991504 0.812612451 0.589556717 0.40962278 0.126851229 645.4244856 1692344.488 0.034703513 0.052234221 5.36E-06 5.270970606 -0.223055734 SYSVGASGSS(ph)SR ddPTM_HeLa_A486_30min_R1 1 SYSVGASGSSSR 12 0 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 SYSVGAS(0.005)GS(0.058)S(0.879)S(0.058)R 60.345 0.029425 100070000 224050 268310 196070 135110 268970 264940 331660 304390 222740 320160 TRUE FALSE FALSE 208345.252 247048.1384 271993.5549 314542.9081 235233.2746 232254.3965 248675.1601 235087.0418 242047.2825 239989.8521 0.868141924 1.02941077 1.1333544 1.310650868 0.980180089 0.967767572 1.036190313 0.97957076 1.008572989 1 17.87261388 SYT(ph)MDDAWK ddPTM_HeLa_A486_30min_R1 1 SYTMDDAWK 9 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 S(0.001)YT(0.999)MDDAWK 111.86 0.0041268 173240000 367080 461470 261410 278570 389240 623260 784720 794630 346470 569480 TRUE FALSE FALSE 341349.5876 424901.4366 362634.9528 648525.0381 340417.8897 546368.518 588374.7561 613710.0957 376502.2986 426878.5013 0.799641084 0.995368554 0.849503903 1.519226281 0.797458501 1.279915752 1.378319016 1.437669252 0.881989366 1 18.70346598 -5.209531133 24.99938518 1.19904612 0.892890667 0.268983952 0.22817356 455.3679214 219307.6368 0.060307452 0.104455423 6.17E-06 5.209531133 -0.306155453 SYT(ph)TPKK ddPTM_HeLa_A486_30min_R1 1 SYTTPKK 7 1 P62979;J3QTR3 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 1 0 S(0.07)Y(0.001)T(0.859)T(0.07)PKK 65.305 0.023576 592730000 1422300 996710 574260 800200 1030100 1656400 1920400 1617800 995860 2011000 TRUE FALSE FALSE 1322604.115 917727.0696 796628.8512 1862906.04 900895.2527 1452050.209 1439895.608 1249462.256 1082181.947 1507432.511 0.87738861 0.608801431 0.528467341 1.235813893 0.597635547 0.96326051 0.955197396 0.828867792 0.717897444 1 20.52366198 -5.187742554 24.99999972 0.885056837 0.665277584 0.247374193 0.181076594 200.8812395 68143.2764 0.047135192 0.081640543 6.49E-06 5.187742554 -0.219779254 SYTELGEKLSWLLK(ac)AK(ac)DHLK ddPTM_HeLa_A486_30min_R1 1 SYTELGEKLSWLLKAKDHLK 20 3 Q68DK2-5;Q68DK2-2;Q68DK2;A0A2H2FF08;Q68DK2-3 Q68DK2-5 ZFYVE26 Zinc finger FYVE domain-containing protein 26 0 2 SYTELGEKLSWLLK(1)AK(1)DHLK 58.073 0.013279 9052800 19212 14779 9405.4 8839.3 13327 20531 32813 26564 14843 35419 FALSE TRUE FALSE 17865.33801 13607.85822 13047.42277 20578.33711 11655.40339 17998.09396 24602.84034 20515.95709 16129.60319 26549.85186 0.672897842 0.512539892 0.491431095 0.775082935 0.439000694 0.677898094 0.926665824 0.772733392 0.607521401 1 14.69641619 -6.528807032 19.11526472 0.807005479 0.578440405 0.441973924 0.130950899 8.612639545 27762.37278 0.048265454 0.037653145 2.96E-07 6.528807032 -0.228565074 SYTVGVMMMHR ddPTM_HeLa_A485_30min_R1 3 SYTVGVMMMHR 11 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 ;; ;; 147.74 0.00014476 123604000 138398 147437 154764 141069 196687 178723 229458 262949 136553 210721 FALSE FALSE TRUE 169184.1576 164678.4746 212017.6439 148775.2423 177104.1517 188080.6599 180432.4238 198460.3455 163957.9346 158192.1327 1.069485282 1.041002936 1.340254033 0.940471815 1.119550945 1.188938139 1.140590374 1.254552562 1.036448095 1 17.27131833 SYTVGVMMMHR ddPTM_HeLa_A486_30min_R1 3 SYTVGVMMMHR 11 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 ;; ;; 154.24 3.93E-05 104238500 110477 129096 143140.2 54743.9 186716 153771 167420 173246 140682 150424 FALSE FALSE TRUE 102733.1328 118865.9628 198567.9189 127446.5658 163296.3382 134800.2974 125529.7452 133801.6677 152876.429 112756.8513 0.911103242 1.054179515 1.761027526 1.1302778 1.44821655 1.195495404 1.113278207 1.186638915 1.35580612 1 16.78285557 -6.497911371 24.39591797 1.175898681 1.27518053 0.03561983 0.231456907 2289.39167 2236995.523 0.083586282 0.073353919 3.18E-07 6.497911371 0.09928185 SYVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 SYVSPR 6 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 SYVS(1)PR;SYVS(1)PR ; 86.833 0.016999 1852100000 1812770 2435290 2358270 1841740 2858700 2168840 2186860 2364800 1510290 1792290 TRUE FALSE FALSE 2216014.433 2720075.981 3230692.209 1942349.593 2574077.79 2282397.109 1719619.496 1784829.092 1813391.35 1345505.088 1.646975885 2.021602152 2.401099958 1.443583982 1.91309406 1.696312507 1.278047561 1.326512332 1.34774024 1 20.35971642 -6.745293804 0.654904208 1.091861559 1.987238653 0.613955326 0.245010729 0.512795327 0.442852506 0.217002325 0.151059358 1.80E-07 6.745293804 0.895377094 SYVS(ph)PR ddPTM_HeLa_A486_30min_R1 4 SYVSPR 6 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 SYVS(1)PR;SYVS(1)PR;SYVS(1)PR;SYVS(1)PR ;;; 96.253 0.013516 2821540000 6030640 6079260 4515460 1936820 6243220 4928180 5571580 5822490 4347960 5838250 TRUE FALSE FALSE 5607923.278 5597517.297 6263967.04 4509014.841 5460137.132 4320191.258 4177511.754 4496836.131 4724844.674 4376314.199 1.281426109 1.279048314 1.431333939 1.030322467 1.247656563 0.987175751 0.954573087 1.027539598 1.079640185 1 22.06128489 -5.689619622 1.185295459 1.012426373 1.321684708 0.640004438 0.09310556 0.295302536 0.871307984 0.037106529 0.058806909 2.04E-06 5.689619622 0.309258336 SYVSSLLAHYLFQGGLR ddPTM_HeLa_A485_30min_R1 1 SYVSSLLAHYLFQGGLR 17 0 Q8N2E6;Q5JU69-2;Q5JU69 Q8N2E6 TOR2A Prosalusin;Salusin-alpha;Salusin-beta;Torsin-2A 0 0 165.34 5.89E-11 26071000 8041.1 12429 13942 5389.5 17118 8461.3 13561 12992 8293.7 11371 FALSE FALSE TRUE 9829.814954 13882.46343 19099.72598 5683.914738 15413.67182 8904.320584 10663.58157 9805.691629 9958.169516 8536.418968 1.151515055 1.62626313 2.237440084 0.665842991 1.805636752 1.043097887 1.249186762 1.148689124 1.166551168 1 13.05941527 -6.011110068 0.900191306 1.120540496 1.574673709 0.155499281 0.396703295 1.096904092 1.945245884 0.216005129 0.261161787 9.75E-07 6.011110068 0.454133213 SYVSSLLAHYLFQGGLR ddPTM_HeLa_A486_30min_R1 1 SYVSSLLAHYLFQGGLR 17 0 Q8N2E6;Q5JU69-2;Q5JU69 Q8N2E6 TOR2A Prosalusin;Salusin-alpha;Salusin-beta;Torsin-2A 0 0 161.84 8.07E-11 14211000 5778.8 6611.3 6430.3 2262.4 8231.5 6213.2 7010.6 6816.6 6851.6 5920.7 FALSE FALSE TRUE 5373.735962 6087.39651 8920.284369 5266.981535 7199.028514 5446.678555 5256.473729 5264.608985 7445.502205 4438.118183 1.210814075 1.371616586 2.009924928 1.18676009 1.622090313 1.227249553 1.184392464 1.186225506 1.677625944 1 12.11573237 -6.278702671 23.94961152 1.262318623 1.487328871 0.148125715 0.269414624 982.7672086 1363401.737 0.093700196 0.082862588 5.26E-07 6.278702671 0.225010247 SYVTTSTR ddPTM_HeLa_A485_30min_R1 2 SYVTTSTR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 176.84 3.96E-06 171178000 92380 125484 125239 94135 152588 120360 142067 148667 120533 132806 FALSE FALSE TRUE 112929.6123 140158.2622 171570.1177 99277.35669 137395.803 126661.8635 111713.2249 112206.1851 144722.8675 99699.90831 1.132695247 1.405801315 1.720865351 0.995761765 1.378093574 1.270431093 1.12049476 1.125439201 1.45158476 1 16.60530456 -5.277716669 24.99764589 1.20499477 1.418388759 0.22711262 0.191727352 1242.832763 1908661.914 0.053359113 0.079405044 5.28E-06 5.277716669 0.213393988 T(ph)ANSPGSGARPDPVR ddPTM_HeLa_A485_30min_R1 1 TANSPGSGARPDPVR 15 1 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 T(0.604)ANS(0.391)PGS(0.006)GARPDPVR 65.47 0.018864 175350000 151980 254310 292490 183080 296510 173800 189560 183580 205350 224660 TRUE FALSE FALSE 185787.4267 284049.3423 400694.2225 193081.1968 266988.4233 182899.8993 149058.9574 138556.7172 246561.8614 168656.3966 1.101573557 1.68418956 2.375802108 1.144819887 1.583031707 1.084452787 0.883802574 0.821532536 1.461918234 1 17.36372751 -6.082821553 1.625285543 1.018406187 1.663543922 0.33432892 0.365909543 0.42146636 2.238613469 0.150411763 0.156508652 8.26E-07 6.082821553 0.645137735 T(ph)AS(ph)EPNLK ddPTM_HeLa_A486_30min_R1 1 TASEPNLK 8 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 2 0 T(1)AS(1)EPNLK 82.749 0.018369 653350000 860220 1169800 867570 489870 1139600 1098500 1399400 1428500 753350 929490 TRUE FALSE FALSE 799923.0202 1077100.788 1203516.338 1140442.117 996660.7417 962978.2387 1049255.319 1103261.734 818650.9846 696739.654 1.14809458 1.545915725 1.727354445 1.636826769 1.43046364 1.382120614 1.50595034 1.583463389 1.174974009 1 19.41026015 -7.919506762 4.046758998 1.00401654 1.502939115 0.553382354 0.149873514 0.14758796 4.39127567 0.149998625 0.039529728 1.20E-08 7.919506762 0.498922575 T(ph)AS(ph)PPPPPK ddPTM_HeLa_A485_30min_R1 5 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK ;;;; 120.77 0.0011051 3472620000 7225230 7886200 6283790 8944820 9610390 8590760 11244340 11934290 7531940 11682470 TRUE FALSE FALSE 8832457.487 8808422.489 8608425.411 9433452.867 8653545.827 9040558.91 8841894.901 9007386.665 9043531.271 8770245.229 1.00709356 1.004353044 0.981548997 1.075620193 0.986693713 1.030821679 1.008169632 1.027039316 1.031160593 1 23.06418575 T(ph)AS(ph)PPPPPK ddPTM_HeLa_A486_30min_R1 6 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK;T(1)AS(1)PPPPPK ;;;;; 121.29 0.0010408 9690890000 16480390 17423560 9735780 6917639 17333360 19220490 21298930 21014700 14032160 22353950 TRUE FALSE FALSE 15325199.77 16042853.65 13505734.75 16104613.19 15159248.36 16849261.36 15969712.44 16230111.56 15248478.93 16756375.42 0.914589187 0.957417893 0.806005739 0.961103627 0.90468541 1.00554332 0.953052915 0.968593216 0.910010581 1 23.99820678 -5.886581527 2.020117927 0.963138197 0.902325 0.251030938 0.047671909 0.47113092 3.932939632 0.016448178 0.019522801 1.30E-06 5.886581527 -0.060813197 T(ph)AS(ph)PPPPPKR ddPTM_HeLa_A485_30min_R1 4 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR ;;; 82.202 0.0047972 13081700000 2145110 2173800 1632270 2610120 2801970 2509960 3275450 3439620 2035130 3315670 TRUE FALSE FALSE 2622282.319 2428007 2236114.597 2752704.246 2522996.028 2641377.624 2575623.35 2596047.802 2443561.924 2489134.489 1.053491617 0.975442272 0.898350253 1.105888114 1.01360374 1.061163081 1.03474656 1.042952003 0.981691401 1 21.24721275 -5.265963021 24.99909741 1.036358334 0.975729471 0.242672385 0.047284772 517.9706671 2862482.259 0.01302319 0.0200633 5.42E-06 5.265963021 -0.060628862 T(ph)AS(ph)PPPPPKR ddPTM_HeLa_A486_30min_R1 3 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR;T(1)AS(1)PPPPPKR ;; 72.846 0.0093664 9808540000 3800100 3758750 2330860 1584650 4177110 4069610 4713640 4649420 3022390 4641250 TRUE FALSE FALSE 3533732.614 3460892.961 3233431.415 3689145.284 3653177.914 3567542.895 3534237.416 3590848.562 3284373.199 3479050.791 1.015717455 0.994780809 0.929400463 1.060388452 1.050050181 1.025435704 1.015862552 1.032134562 0.9440429 1 21.73026231 -5.273053589 24.99885147 1.021134416 0.981447695 0.188457315 0.036048812 1176.391715 2532106.664 0.010317 0.015456069 5.33E-06 5.273053589 -0.039686721 T(ph)ASELLLDRR ddPTM_HeLa_A485_30min_R1 6 TASELLLDRR 10 1 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 0 T(0.689)AS(0.311)ELLLDRR;T(0.756)AS(0.244)ELLLDRR;T(0.991)AS(0.009)ELLLDRR;T(0.857)AS(0.143)ELLLDRR;T(0.826)AS(0.174)ELLLDRR;T(0.805)AS(0.195)ELLLDRR ;;;;; 216.03 6.84E-17 1340980000 916211 929953 500704 979928 611621 930093 1151921 1116331 681775 1971760 TRUE FALSE FALSE 1120018.976 1038702.914 685935.2456 1033458.985 550725.8657 978791.2313 905803.668 842549.0719 818600.9889 1480236.52 0.756648658 0.701714152 0.463395705 0.698171523 0.372052614 0.661239753 0.611931712 0.569198949 0.553020398 1 20.49739628 -10.37888554 3.114592092 1.004703931 0.595288964 0.542369797 0.110576762 26292563.4 33473960.51 1112471.026 0.026718473 4.18E-11 10.37888554 -0.409414967 T(ph)ASELLLDRR ddPTM_HeLa_A486_30min_R1 4 TASELLLDRR 10 1 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 0 T(0.866)AS(0.134)ELLLDRR;T(0.732)AS(0.268)ELLLDRR;T(0.62)AS(0.38)ELLLDRR;T(0.924)AS(0.076)ELLLDRR ;;; 209.19 3.40E-14 897800000 533197 509072.9 418811 159325.2 664920 541014 537326 476264.9 587273 813755 TRUE FALSE FALSE 495822.6437 468732.1094 580985.8353 370917.1174 581519.5335 474269.1933 402881.3515 367829.7791 638178.2965 609985.4513 0.812843393 0.768431621 0.952458512 0.608075351 0.953333448 0.777509025 0.660476985 0.60301402 1.046218881 1 19.21841531 -7.784165302 24.99777329 1.023109849 0.770957058 0.435205063 0.116626336 257.0684201 282758.9161 0.111720207 0.028926868 1.64E-08 7.784165302 -0.252152791 T(ph)ASPLEHILQTLFGK ddPTM_HeLa_A486_30min_R1 2 TASPLEHILQTLFGK 15 0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 T(0.5)AS(0.5)PLEHILQTLFGK;T(0.5)AS(0.5)PLEHILQTLFGK ; 137.14 9.24E-06 468350000 73724 65603 41534 34787 64959 66659 85293 75086 58110 80981 TRUE FALSE FALSE 68556.32831 60404.37936 57617.07712 80985.89404 56811.2365 58435.29032 63951.78926 57990.55692 63147.02159 60702.8305 1.129376139 0.995083406 0.949166236 1.334137031 0.935891062 0.962645231 1.05352236 0.955318828 1.040264862 1 15.88947617 T(ph)ASPPGPPPYGK ddPTM_HeLa_A485_30min_R1 1 TASPPGPPPYGK 12 0 P54259 P54259 ATN1 Atrophin-1 1 0 T(0.5)AS(0.5)PPGPPPYGK 79.659 0.031096 81672000 104850 110660 87892 134750 148950 112370 154220 193540 96300 182210 TRUE FALSE FALSE 128173.5208 123600.7244 120406.9083 142111.0513 134120.015 118253.5194 121269.6371 146074.0115 115626.5267 136788.4003 0.937020394 0.903590685 0.880242097 1.038911567 0.980492605 0.864499615 0.886549129 1.067883031 0.845294823 1 17.06158637 T(ph)ASRSPASCHEHPMADDPSK ddPTM_HeLa_A486_30min_R1 1 TASRSPASCHEHPMADDPSK 20 1 Q9BXB5;Q9BXB5-2;A0A5F9ZH75;H7C487 Q9BXB5 OSBPL10 Oxysterol-binding protein-related protein 10;Oxysterol-binding protein 1 0 T(0.429)AS(0.359)RS(0.212)PASCHEHPMADDPSK 130.78 1.46E-06 80008000 98724 80799 62316 6524.6 114900 70541 104800 106880 69360 47627 TRUE FALSE FALSE 91803.95741 74396.19298 86446.42408 15189.59854 100488.1706 61838.36863 78577.93154 82545.75717 75372.18065 35700.8892 2.571475374 2.08387507 2.42140815 0.425468353 2.814724587 1.732124045 2.201007686 2.312148493 2.111212979 1 15.12367239 -10.04928896 6.538011577 0.999999359 2.059149724 0.213242303 0.618701601 5.59E-06 8.13E-07 0.576386113 0.139794081 8.93E-11 10.04928896 1.059150364 T(ph)ASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A485_30min_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.33)AS(0.31)T(0.31)PT(0.049)PPQTGGGLEPQANGETPQVAVIVRPDDR 48.07 0.034034 190320000 36087 38084 42341 38254 50753 47918 55064 57499 41361 53165 TRUE FALSE FALSE 44114.42865 42537.59251 58004.69786 40343.71916 45699.85312 50426.91238 43299.12657 43397.2801 49661.77331 39911.94393 1.105293912 1.065786036 1.453316781 1.010818196 1.14501697 1.26345418 1.084866391 1.087325643 1.244283501 1 15.28453293 -11.02761689 2.390553904 0.811992514 1.16150203 0.137095582 0.122096806 10115736.13 3554343.543 10427434.79 0.030020867 9.38E-12 11.02761689 0.349509517 T(ph)ATCHSSSSPPIDAASAEPYGFR ddPTM_HeLa_A485_30min_R1 4 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.198)AT(0.198)CHS(0.198)S(0.135)S(0.135)S(0.135)PPIDAASAEPYGFR;T(0.167)AT(0.167)CHS(0.167)S(0.167)S(0.167)S(0.167)PPIDAASAEPYGFR;T(0.202)AT(0.202)CHS(0.202)S(0.131)S(0.131)S(0.131)PPIDAASAEPYGFR;T(0.167)AT(0.167)CHS(0.167)S(0.167)S(0.167)S(0.167)PPIDAASAEPYGFR ;;; 151.23 2.28E-09 1909460000 167426 294268 276054 77140.8 185764 420416 182361 366951 351052 87390 TRUE FALSE FALSE 204669.3361 328680.0828 378177.8622 81354.80657 167268.6839 442428.3317 143398.0826 276955.6919 421504.9164 65605.28129 3.119708232 5.009963776 5.764442354 1.2400649 2.549622235 6.743791398 2.18577041 4.221545681 6.424862573 1 16.00152434 T(ph)ATCHSSSSPPIDAASAEPYGFR ddPTM_HeLa_A486_30min_R1 2 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.2)AT(0.2)CHS(0.2)S(0.133)S(0.133)S(0.133)PPIDAASAEPYGFR;T(0.167)AT(0.167)CHS(0.167)S(0.167)S(0.167)S(0.167)PPIDAASAEPYGFR ; 140.06 6.06E-07 961730000 98806 195649 236780 14517.6 233830 123901 74018 126214 137495 44586 TRUE FALSE FALSE 91880.20963 180145.0607 328467.5572 33797.70648 204500.861 108615.3544 55497.91352 97477.82743 149413.1773 33421.37539 2.749145077 5.390115116 9.828068214 1.011260191 6.118864308 3.249876855 1.660551454 2.916631236 4.470587328 1 15.02848349 -6.130161243 1.204851814 2.627163641 5.401276907 0.191731635 2.328122795 0.789568587 2.375856169 1.111377154 1.127402669 7.41E-07 6.130161243 2.774113266 T(ph)AY(ph)FS(ph)LDT(ph)RFKVGT(ph)DGVITVK ddPTM_HeLa_A486_30min_R1 1 TAYFSLDTRFKVGTDGVITVK 21 2 H3BVI7;H3BNC6;A0A087WX17;A0A087WU43;A0A087WXI5;P12830-2;P12830 H3BVI7 CDH1 Cadherin-1;E-Cad/CTF1;E-Cad/CTF2;E-Cad/CTF3 5 0 T(1)AY(1)FS(1)LDT(1)RFKVGT(1)DGVITVK 51.819 0.011376 59098000 21649 22520 14392 11729 26388 31741 35143 30918 19802 32448 TRUE FALSE FALSE 20131.5169 20735.43318 19964.96783 27305.70475 23078.17098 27825.11814 26349.8497 23878.64634 21518.4533 24322.8096 0.827680569 0.852509785 0.820833126 1.122637771 0.948828337 1.143992762 1.08333906 0.981738818 0.884702617 1 14.57002227 -5.245772088 24.88133537 1.027234045 0.835557998 0.575850029 0.074647613 563.3989962 894736.4436 0.020805665 0.035876328 5.68E-06 5.245772088 -0.191676047 T(ph)CNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_HeLa_A485_30min_R1 1 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 2 0 T(0.47)CNS(0.47)PQNS(0.47)T(0.47)DS(0.115)VS(0.005)DIVPDSPFPGALGSDTR 65.581 0.010364 21489000 4005.1 6122.6 6057.9 6605.9 8265.8 6420.8 8193.4 7100.9 5317.9 8148.6 TRUE FALSE FALSE 4896.020678 6838.58481 8298.9693 6966.76359 7442.827929 6756.98316 6442.813156 5359.393141 6385.153751 6117.303984 0.800355956 1.117908286 1.356638369 1.138861761 1.216684335 1.104568806 1.053211214 0.87610378 1.043785591 1 12.57868025 -6.900576808 3.007555927 0.968963211 1.139067247 0.18686581 0.136182411 0.404594622 7.325537358 0.066918499 0.041808501 1.26E-07 6.900576808 0.170104036 T(ph)CNSPQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_HeLa_A485_30min_R1 1 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 T(0.449)CNS(0.449)PQNS(0.088)T(0.013)DSVSDIVPDSPFPGALGSDTR 124.79 5.23E-06 85955000 34030 41977 36199 43662 57081 40956 59986 62487 44415 59820 TRUE FALSE FALSE 41599.8561 46885.845 49590.51647 46047.1445 51397.81522 43100.39283 47169.50106 47161.96527 53328.6831 44907.97491 0.926335605 1.044042736 1.104269711 1.025366755 1.144514205 0.959749196 1.050359121 1.050191316 1.187510308 1 15.45468405 -4.279495581 3.876236211 1.064664235 0.915300284 0.298656054 0.063427452 0.279293794 8.413990189 0.015370819 0.114900553 5.25E-05 4.279495581 -0.149363952 T(ph)DSQSVRHSPIAPSSPSPQVLAQK ddPTM_HeLa_A485_30min_R1 1 TDSQSVRHSPIAPSSPSPQVLAQK 24 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 T(0.276)DS(0.235)QS(0.235)VRHS(0.235)PIAPS(0.01)S(0.01)PSPQVLAQK 88.036 0.0034629 545930000 324240 442330 368910 277750 659420 412370 671090 660060 395380 531700 TRUE FALSE FALSE 396366.0694 494056.6457 505385.1606 292922.7792 593765.8294 433961.0556 527706.1392 498179.2501 474729.1394 399156.9752 0.993007999 1.23775025 1.266131352 0.73385359 1.487549677 1.087193968 1.322051654 1.248078528 1.189329434 1 18.6065967 -5.788826899 24.99999886 1.23299648 1.08543566 0.153422651 0.183959799 447.2039221 408216.3038 0.054985156 0.062361744 1.63E-06 5.788826899 -0.14756082 T(ph)DSQSVRHSPIAPSSPSPQVLAQK ddPTM_HeLa_A486_30min_R1 1 TDSQSVRHSPIAPSSPSPQVLAQK 24 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 T(0.267)DS(0.216)QS(0.216)VRHS(0.216)PIAPS(0.04)S(0.038)PS(0.006)PQVLAQK 95.622 0.0020644 467780000 525990 511720 367710 41648 664420 465690 614160 567900 569650 384480 TRUE FALSE FALSE 489120.8172 471169.4435 510097.1596 96958.64877 581082.2481 408237.9026 460490.6721 438601.5672 619027.7207 288203.7055 1.697135769 1.634848667 1.769918811 0.336424019 2.016220601 1.416490818 1.597795807 1.521845691 2.147882588 1 18.13672936 T(ph)DVNLENGLEPAETHSMVRHKDGGY(ph)SEEEDVK ddPTM_HeLa_A485_30min_R1 1 TDVNLENGLEPAETHSMVRHKDGGYSEEEDVK 32 2 E7EPJ1;Q8WYP3;Q8WYP3-2 E7EPJ1 RIN2 Ras and Rab interactor 2 2 0 T(0.282)DVNLENGLEPAET(0.407)HS(0.409)MVRHKDGGY(0.594)S(0.309)EEEDVK 68.453 0.0015656 607980000 71883 41586 18216 148980 40884 65588 98395 77462 41544 200340 TRUE FALSE FALSE 87873.12536 46449.12095 24954.85643 157118.4002 36813.44541 69022.08626 77372.10444 58464.32304 49881.49974 150398.925 0.584266978 0.308839448 0.165924434 1.044677681 0.244771998 0.458926726 0.514445861 0.388728331 0.331661278 1 17.19843473 -10.14257551 4.633433165 1.000056076 0.448618902 0.337370053 0.231603086 138897597.5 152023329.9 69366.97127 0.054390848 7.20E-11 10.14257551 -0.551437173 T(ph)EEPDRDER ddPTM_HeLa_A486_30min_R1 2 TEEPDRDER 9 1 O95232;H0YA81;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 1 0 T(1)EEPDRDER;T(1)EEPDRDER ; 169.65 1.49E-05 831810000 979230 1928750 1319650 585450 1537730 1588290 1690490 1508100 1474700 1625640 TRUE FALSE FALSE 910591.0337 1775908.826 1830653.821 1362957.187 1344853.565 1392342.928 1267511.522 1164738.552 1602528.183 1218569.163 0.747262496 1.457372203 1.50229784 1.118489806 1.103633348 1.142604762 1.040163792 0.955824739 1.315090052 1 20.21675671 -5.492405419 24.73893836 1.092393876 1.266579809 0.079484391 0.210668456 1288.909324 1046365.139 0.058713974 0.086947275 3.22E-06 5.492405419 0.174185933 T(ph)ESEMSARIAK ddPTM_HeLa_A485_30min_R1 1 TESEMSARIAK 11 1 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 T(0.495)ES(0.495)EMS(0.011)ARIAK 66.692 0.016176 24353000 32959 19964 22320 46225 47213 23899 38356 37716 28864 71771 TRUE FALSE FALSE 40290.61584 22298.61614 30577.09681 48750.1547 42512.30795 25150.31469 30160.92726 28466.09186 34656.74004 53879.81055 0.747786888 0.413858473 0.567505648 0.904794471 0.78902111 0.466785507 0.559781613 0.52832576 0.643223124 1 15.71745716 -8.055651103 20.97870337 1.000000002 0.618964826 0.380762176 0.143807563 2887.396729 1088457.45 0.148412923 0.038320052 8.80E-09 8.055651103 -0.381035176 T(ph)ESEMSARIAK ddPTM_HeLa_A486_30min_R1 2 TESEMSARIAK 11 1 Q86XL3;F5H1D4;Q86XL3-3 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 T(0.497)ES(0.497)EMS(0.007)ARIAK;T(0.497)ES(0.497)EMS(0.006)ARIAK ; 78.334 0.0079916 107371000 66028 141963 140127 66813 201237 149138 171284 158144 138981 112144 TRUE FALSE FALSE 61399.77817 130713.3349 194387.9271 155544.0405 175995.979 130738.8699 128426.9315 122138.0635 151027.985 84062.41247 0.730407044 1.554955789 2.312423846 1.850339956 2.093634644 1.555259551 1.52775691 1.452945019 1.796617306 1 16.35917324 -6.502530176 23.46444686 1.490565492 1.749594883 0.069568622 0.431165666 1052.738034 1213942.492 0.159381952 0.13863196 3.14E-07 6.502530176 0.259029391 T(ph)FMKDSVVGSSK ddPTM_HeLa_A486_30min_R1 1 TFMKDSVVGSSK 12 1 A0A087WZL9;Q9H582-2;Q9H582 A0A087WZL9 ZNF644 Zinc finger protein 644 1 0 T(0.5)FMKDS(0.5)VVGS(0.001)SK 73.386 0.011446 283080000 773690 680730 271530 663050 564520 1158500 1287400 1343800 511260 1941100 TRUE FALSE FALSE 719458.3263 626786.4756 376673.6878 1543613.909 493712.6377 1015576.049 965278.9033 1037846.075 555576.4284 1455035.926 0.494460868 0.430770447 0.258875868 1.060876836 0.339313022 0.697973178 0.663405546 0.71327866 0.381830042 1 20.47262334 -14 0.138074874 2.373370915 0.417958806 0.252320948 0.22388327 200.3970456 1.702900284 77.04122552 1.404737507 1.00E-14 14 -1.955412109 T(ph)FPASNYTVSSR ddPTM_HeLa_A486_30min_R1 1 TFPASNYTVSSR 12 0 O95835-2;O95835;Q6PJG3 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 0 T(1)FPASNYTVSSR 117.48 0.0010144 227560000 29557 49352 50373 12386 52606 47101 46462 79519 46043 56081 TRUE FALSE FALSE 27485.20693 45441.16778 69878.77464 28835.23395 46007.66495 41290.15751 34836.71618 61414.25959 50034.04431 42037.95257 0.653818877 1.080955779 1.662278259 0.685933358 1.09443163 0.98221143 0.828696786 1.460924137 1.190211256 1 15.35940479 -7.257206459 24.93376965 1.244175764 1.01810727 0.104958521 0.285386733 798.1387535 4701423.667 0.140376358 0.077301462 5.53E-08 7.257206459 -0.226068494 T(ph)FQELAVFHDLEGMWEELSPK ddPTM_HeLa_A486_30min_R1 1 TFQELAVFHDLEGMWEELSPK 21 0 O95477 O95477 ABCA1 ATP-binding cassette sub-family A member 1 1 0 T(1)FQELAVFHDLEGMWEELSPK 52.321 0.018258 102590000 336930 425190 302420 14973 389220 367090 269920 319340 390670 136440 TRUE FALSE FALSE 313312.9469 391496.3959 419525.1231 34857.90069 340400.3983 321802.1681 202383.1611 246633.2531 424533.5902 102274.5359 3.063450194 3.827897065 4.101950884 0.340826779 3.32830059 3.146454444 1.97882258 2.411482496 4.150921696 1 16.64208747 T(ph)FSLDAVPPDHSPR ddPTM_HeLa_A486_30min_R1 2 TFSLDAVPPDHSPR 14 0 Q9BST9-3;Q9BST9-2;Q9BST9 Q9BST9-3 RTKN Rhotekin 1 0 T(0.5)FS(0.5)LDAVPPDHSPR;T(0.5)FS(0.5)LDAVPPDHSPR ; 72.47 0.0024534 175830000 174657 170925 134054 107550 186213 207941 261482 254301 159974 298860 TRUE FALSE FALSE 162414.4462 157380.2805 185963.2989 250381.8353 162856.4292 182287.3536 196056.4379 196402.2137 173840.6751 224023.5107 0.724988398 0.702516803 0.830106172 1.117658742 0.726961329 0.813697424 0.875160099 0.876703579 0.775992995 1 17.77329062 -1.000000008 0.033523528 1.401059917 4.19E-07 0.183399981 0.112460998 2246.470476 5.774663525 72.97525039 196.0318659 0.099999998 1.000000008 -1.401059498 T(ph)FSLTEVR ddPTM_HeLa_A485_30min_R1 4 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(0.997)FS(0.003)LTEVR;T(0.998)FS(0.002)LTEVR;T(0.999)FS(0.001)LTEVR;T(0.846)FS(0.154)LT(0.001)EVR ;;; 218.47 6.26E-08 2191630000 906501 915230 899000 926150 1223190 762145 979270 856523 771490 1024390 TRUE FALSE FALSE 1108149.02 1022258.187 1231577.511 976743.2294 1101404.909 802049.7337 770040.9646 646459.3913 926320.9665 769028.4255 1.440972769 1.329285307 1.601472026 1.270100294 1.432203118 1.042938996 1.001316647 0.840618331 1.204534105 1 19.5526774 -6.294800645 4.737813445 1.002255556 1.413771884 0.748717545 0.114906242 0.09807495 5.574648436 0.039239164 0.035447151 5.07E-07 6.294800645 0.411516328 T(ph)FSLTEVR ddPTM_HeLa_A486_30min_R1 7 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(0.997)FS(0.003)LTEVR;T(0.999)FS(0.001)LTEVR;T(0.999)FS(0.001)LTEVR;T(0.977)FS(0.023)LTEVR;T(0.985)FS(0.015)LTEVR;T(0.985)FS(0.015)LTEVR;T(0.572)FS(0.423)LT(0.005)EVR ;;;;;; 208.25 4.44E-06 4832747000 1315527 1434622 1200443 486237 1544255 1305333 1550735 1435976 1222491 1272114 TRUE FALSE FALSE 1223315.351 1320937.328 1665286.679 1131984.309 1350560.138 1144294.286 1162724.701 1109035.612 1328457.504 953568.3743 1.28288163 1.385257065 1.746373646 1.187103452 1.416322284 1.200012833 1.219340671 1.163037326 1.393143418 1 19.86297686 -5.968775919 1.361439198 1.203590014 1.441779293 0.288629416 0.161582228 0.563219387 2.163095969 0.06658641 0.077146853 1.07E-06 5.968775919 0.238189279 T(ph)GEQFSFNTTAAQPQY(ph)FK ddPTM_HeLa_A485_30min_R1 1 TGEQFSFNTTAAQPQYFK 18 0 E9PME7;E9PPN9;F5H8L4;C9JBG5;Q8NBJ9;Q8NBJ9-2 E9PME7 SIDT2 SID1 transmembrane family member 2 2 0 T(0.258)GEQFS(0.26)FNT(0.261)T(0.26)AAQPQY(0.961)FK 42.338 0.031459 19070000 27133 21415 18415 26320 35471 24682 37565 35979 24645 45923 TRUE FALSE FALSE 33168.64224 23919.29796 25227.47481 27757.79495 31939.38269 25974.31135 29538.93087 27155.09384 29591.02544 34475.24125 0.962100367 0.693810894 0.731756295 0.80515158 0.926444066 0.753419278 0.856815784 0.787669436 0.858326856 1 15.07327303 -11.12058589 0.324141761 1.217354395 0.801351546 0.317924517 0.079677704 45.64839536 2.12509527 7.354001526 0.07188134 7.58E-12 11.12058589 -0.416002849 T(ph)GEQFSFNTTAAQPQY(ph)FK ddPTM_HeLa_A486_30min_R1 2 TGEQFSFNTTAAQPQYFK 18 0 E9PME7;E9PPN9;F5H8L4;C9JBG5;Q8NBJ9;Q8NBJ9-2 E9PME7 SIDT2 SID1 transmembrane family member 2 2 0 T(0.258)GEQFS(0.26)FNT(0.261)T(0.26)AAQPQY(0.961)FK;T(0.273)GEQFS(0.284)FNT(0.285)T(0.283)AAQPQY(0.875)FK ; 44.415 0.028121 56854000 35355 57224 44770 38466 74638 75014 98706 91950 55143 62930 TRUE FALSE FALSE 32876.79707 52689.36183 62106.14298 89550.79196 65276.20607 65759.53537 74008.71479 71014.99225 59922.83964 47171.91839 0.696956965 1.116964576 1.316591419 1.898391989 1.383793755 1.394039878 1.56891467 1.505450587 1.270307456 1 15.52564065 -4.474471472 2.03918539 1.459406319 0.645711213 0.511425434 0.218199704 0.347777829 2.183987227 0.057667461 0.446592273 3.35E-05 4.474471472 -0.813695106 T(ph)GQS(ph)LAT(ph)LHAHKNTVMEVK ddPTM_HeLa_A485_30min_R1 1 TGQSLATLHAHKNTVMEVK 19 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 3 0 T(0.927)GQS(0.942)LAT(0.77)LHAHKNT(0.361)VMEVK 43.176 0.026625 782180000 337550 276830 215050 285020 415200 395860 462690 475920 323370 412530 TRUE FALSE FALSE 412636.833 309202.8604 294605.944 300589.9209 373861.2301 416586.6175 363832.5017 359199.8738 388267.3929 309693.8631 1.332402357 0.998414555 0.951281182 0.970603414 1.207196121 1.345156192 1.174813405 1.159854671 1.253713551 1 18.24048327 -5.780968922 24.65645643 1.205101365 1.050557174 0.18155341 0.128614921 295.2348452 372738.3369 0.040003748 0.045427973 1.66E-06 5.780968922 -0.154544191 T(ph)GRYARLPKDPK ddPTM_HeLa_A486_30min_R1 1 TGRYARLPKDPK 12 3 Q01970 Q01970 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 T(1)GRYARLPKDPK 77.527 0.009693 1630600000 2761600 3122100 2485800 122110 4662500 2485200 2089700 3049600 2620400 683580 TRUE FALSE FALSE 2568026.101 2874693.426 3448368.332 284278.2511 4077685.774 2178601.292 1566834.957 2355272.652 2847538.382 512407.1186 5.011690914 5.610174646 6.729743219 0.554789816 7.957902273 4.251699893 3.057793111 4.596486986 5.557179591 1 18.96693099 -10.77791958 2.601762385 1.19E-05 4.78649917 0.264574495 1.90722313 4687207.245 3573558.372 29864622.64 0.46361398 1.67E-11 10.77791958 4.786487222 T(ph)GS(ph)GKS(ph)SFSLAFFRMVDT(ph)FEGHIIIDGIDIAK ddPTM_HeLa_A486_30min_R1 1 TGSGKSSFSLAFFRMVDTFEGHIIIDGIDIAK 32 2 A0A2R8YHG6;A0A2R8Y6Q0;A0A2R8Y4Z4;A0A2R8YDG0;A0A2R8Y5D8;A0A2R8Y4V0;Q09428;Q09428-2 A0A2R8YHG6 ABCC8 ATP-binding cassette sub-family C member 8 4 0 T(0.662)GS(0.662)GKS(0.662)S(0.662)FS(0.662)LAFFRMVDT(0.69)FEGHIIIDGIDIAK 42.828 0.023776 539570000 40720 42548 19423 18606 35342 54197 61307 59202 23951 97870 TRUE FALSE FALSE 37865.73828 39176.34152 26944.10577 43315.7083 30909.07681 47510.72517 45967.34016 45722.99697 26027.09196 73362.71497 0.516144179 0.534008884 0.367272473 0.590432188 0.421318606 0.647614053 0.626576323 0.623245704 0.354772748 1 16.16275941 -11.24249783 2.473013339 2.889335506 0.525135992 0.665465493 0.102010926 13927274.7 1672457.897 148203450.7 0.026679288 5.72E-12 11.24249783 -2.364199514 T(ph)GSESSQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 1 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.978)GS(0.021)ESSQTGTSTT(0.001)SSR 118.19 1.71E-05 0 139920 172200 142590 65533 202030 155950 173270 176440 145430 163320 TRUE FALSE FALSE 130112.3305 158554.2449 197804.6667 152564.1359 176689.5135 136710.4746 129916.0133 136268.4637 158035.9895 122423.609 1.062804239 1.295128008 1.615739549 1.246198647 1.443263395 1.116700249 1.061200649 1.113089745 1.290894712 1 16.90152228 -6.278835381 23.87079374 1.119996613 1.341470423 0.344496836 0.148857459 544.7346751 747481.8851 0.053167421 0.047014996 5.26E-07 6.278835381 0.22147381 T(ph)GSNISGASSDISLDEQYKHQLEETK ddPTM_HeLa_A486_30min_R1 1 TGSNISGASSDISLDEQYKHQLEETK 26 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 T(0.481)GS(0.481)NIS(0.021)GAS(0.016)S(0.002)DISLDEQYKHQLEETK 166.56 1.02E-13 102310000 65048 53178 23677 64267 48130 88933 117430 106510 44781 190930 TRUE FALSE FALSE 60488.47111 48963.98161 32845.36849 149616.8239 42093.08661 77961.35066 88047.77195 82259.9981 48662.65314 143119.8853 0.422641976 0.342118648 0.229495492 1.04539508 0.294110679 0.544727593 0.615202924 0.574762885 0.340013221 1 17.12686461 -14 0.300238336 5.137037213 0.47086946 0.316014929 0.222486347 338.1980751 3.134598069 881.5941791 0.22332064 1.00E-14 14 -4.666167753 T(ph)GSPGDAPERPPLCDFSEGLSAPMDFYR ddPTM_HeLa_A485_30min_R1 3 TGSPGDAPERPPLCDFSEGLSAPMDFYR 28 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 T(0.5)GS(0.5)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.5)GS(0.5)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.527)GS(0.473)PGDAPERPPLCDFSEGLSAPMDFYR ;; 97.437 0.0017563 364813000 45726 49130 45814 66038 63572 46896 78245 60985 43606 95230 TRUE FALSE FALSE 55897.59095 54875.32613 62762.50508 69645.48872 57242.54847 49351.40205 61527.31655 46028.33313 52357.32422 71490.91358 0.781883853 0.767584626 0.877908841 0.974186582 0.800696838 0.690317127 0.860631281 0.643834731 0.73236334 1 16.12547227 -5.99365649 24.99024755 0.765384402 0.851566784 0.062341453 0.106421092 352.4621341 1388510.331 0.032586258 0.036858313 1.01E-06 5.99365649 0.086182382 T(ph)GSPGSEVVTLQQFLEESNK ddPTM_HeLa_A486_30min_R1 2 TGSPGSEVVTLQQFLEESNK 20 0 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;A0A2R8Y7B1;H0Y470;A0A2R8Y820;H0Y7K3;H0Y7U8;A0A2R8Y7D4;A0A2R8Y4C6;A0A2R8Y4Z5 Q3V6T2 CCDC88A Girdin 1 0 T(0.324)GS(0.324)PGS(0.324)EVVT(0.029)LQQFLEESNK;T(0.33)GS(0.33)PGS(0.33)EVVT(0.011)LQQFLEESNK ; 68.187 0.0011798 9328700 22873.4 27494 18969.8 12340.8 23825.7 29650.7 37748 31950 23142.7 35617 TRUE FALSE FALSE 21270.09278 25315.27531 26315.41459 28730.00607 20837.25854 25992.6981 28303.05114 24675.68246 25148.72787 26698.27137 0.796684268 0.948199041 0.985659866 1.076099859 0.780472198 0.973572324 1.060108003 0.924242702 0.941960905 1 14.70445871 -4.266445844 4.018826111 0.965849027 0.782435824 0.304466781 0.077030738 0.292279137 10.03301146 0.019532494 0.155293708 5.41E-05 4.266445844 -0.183413203 T(ph)GTTVPESIHSFIGDGLVKPEALNKK ddPTM_HeLa_A485_30min_R1 1 TGTTVPESIHSFIGDGLVKPEALNKK 26 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.333)GT(0.333)T(0.333)VPESIHSFIGDGLVKPEALNKK 202.98 1.69E-28 282830000 470320 348750 202700 386130 499350 424450 806580 786930 291180 746760 TRUE FALSE FALSE 574941.0614 389533.2788 277687.1651 407223.3042 449632.9607 446673.5457 634247.5938 593934.1836 349617.1551 560606.4751 1.025569784 0.694842632 0.495333496 0.726397789 0.802047391 0.796768438 1.131359736 1.059449382 0.623640951 1 19.09662888 -6.543045313 21.68956207 0.959352517 0.737398078 0.237677773 0.173698025 74.93389008 80589.72535 0.068130051 0.052788632 2.86E-07 6.543045313 -0.221954438 T(ph)GTTVPESIHSFIGDGLVKPEALNKK ddPTM_HeLa_A486_30min_R1 1 TGTTVPESIHSFIGDGLVKPEALNKK 26 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.333)GT(0.333)T(0.333)VPESIHSFIGDGLVKPEALNKK 178.11 1.65E-15 186800000 511500 400550 147920 31414 369540 435730 648220 544570 322660 403080 TRUE FALSE FALSE 475646.4914 368808.9592 205198.5854 73133.37958 323188.8474 381974.0628 486028.4998 420583.2989 350628.4286 302146.1444 1.574226579 1.220631029 0.679136866 0.242046377 1.069644122 1.264203002 1.608587463 1.391986318 1.160459715 1 18.20488701 -6.186993 4.04400272 1.331611242 0.906607794 0.171261614 0.356511371 0.382687523 12.04332557 0.13331629 0.131671175 6.50E-07 6.186993 -0.425003448 T(ph)HGKNSLNSGQGPSPK ddPTM_HeLa_A485_30min_R1 1 THGKNSLNSGQGPSPK 16 1 P00451 P00451 F8 "Coagulation factor VIII;Factor VIIIa heavy chain, 200 kDa isoform;Factor VIIIa heavy chain, 92 kDa isoform;Factor VIII B chain;Factor VIIIa light chain" 1 0 T(0.736)HGKNS(0.132)LNS(0.132)GQGPSPK 70.235 0.010382 1202100000 232260 2077600 3423900 90688 1982200 652750 788860 617010 1386600 157950 TRUE FALSE FALSE 283925.4357 2320557.247 4690543.09 95642.05581 1784845.208 686926.9807 620313.6166 465687.3301 1664877.901 118575.9719 2.394460119 19.57021487 39.55728144 0.806588842 15.05233464 5.793138103 5.231360173 3.927333024 14.04060094 1 16.85545217 -5.331213212 24.99999938 6.939924949 20.41470677 0.313281293 9.456873841 196.4304466 70380.39323 2.662750573 3.949497906 4.66E-06 5.331213212 13.47478182 T(ph)HSFENVSCHLPDSR ddPTM_HeLa_A486_30min_R1 1 THSFENVSCHLPDSR 15 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 T(0.575)HS(0.425)FENVSCHLPDSR 172.66 3.04E-12 742320000 517540 533450 334510 70775 584940 527450 620780 624480 510550 404930 TRUE FALSE FALSE 481263.1186 491177.4792 464041.2305 164767.7768 511571.3709 462378.5817 465454.2781 482299.5363 554804.8851 303532.8923 1.585538605 1.618201821 1.528800477 0.54283335 1.685390229 1.523322821 1.533455813 1.58895312 1.827824592 1 18.21149334 T(ph)HSTSSSLGSGESPFSR ddPTM_HeLa_A485_30min_R1 1 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 0 T(0.393)HS(0.393)T(0.21)S(0.005)SSLGSGESPFSR 162.73 9.63E-12 1428500000 193000 286590 261360 127110 397710 207370 297400 305190 218240 215550 TRUE FALSE FALSE 235932.1842 320104.2075 358047.9401 134053.6974 358112.596 218227.5725 233858.0605 230341.674 262038.7662 161817.3519 1.458015357 1.978182214 2.212667158 0.828425974 2.213066718 1.348604275 1.445197673 1.423467084 1.619348995 1 17.30400679 -10.94215085 0.116688682 1.60E-11 2.060518978 0.204823309 0.395392746 95.06439401 1.608283884 31.43034132 5.177444211 1.14E-11 10.94215085 2.060518978 T(ph)HSTSSSLGSGESPFSR ddPTM_HeLa_A486_30min_R1 2 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 0 T(0.453)HS(0.453)T(0.092)S(0.001)SSLGSGESPFSR;T(0.44)HS(0.44)T(0.113)S(0.008)SSLGSGESPFSR ; 225.15 3.29E-34 2436800000 636090 608060 504070 65367 726250 498230 615700 596270 580040 323150 TRUE FALSE FALSE 591503.3758 559875.1111 699259.4035 152177.6795 635156.953 436763.4482 461645.3478 460512.3375 630318.3342 242231.1366 2.441896545 2.311325946 2.886744508 0.628233354 2.622111103 1.803085492 1.90580515 1.901127757 2.60213589 1 17.8860248 T(ph)HT(ph)GQY(ph)S(ph)ALSVACGPSGEAGPR ddPTM_HeLa_A485_30min_R1 1 THTGQYSALSVACGPSGEAGPR 22 0 Q8N9L1-2 Q8N9L1-2 4 0 T(0.652)HT(0.69)GQY(0.692)S(0.711)ALS(0.689)VACGPS(0.566)GEAGPR 46.307 0.024689 1853500000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)HT(ph)GQYS(ph)ALS(ph)VACGPSGEAGPR ddPTM_HeLa_A485_30min_R1 1 THTGQYSALSVACGPSGEAGPR 22 0 Q8N9L1-2 Q8N9L1-2 4 0 T(0.679)HT(0.679)GQY(0.641)S(0.667)ALS(0.667)VACGPS(0.667)GEAGPR 43.12 0.021292 1851900000 1165 1289.7 0 0 1263.5 1242.1 0 1975 0 0 TRUE FALSE FALSE 1424.150231 1440.519196 0 0 1137.701504 1307.134435 0 1490.628153 0 0 0 T(ph)HT(ph)GQYS(ph)ALS(ph)VACGPSGEAGPR ddPTM_HeLa_A486_30min_R1 1 THTGQYSALSVACGPSGEAGPR 22 0 Q8N9L1-2 Q8N9L1-2 4 0 T(0.679)HT(0.679)GQY(0.641)S(0.667)ALS(0.667)VACGPS(0.667)GEAGPR 43.12 0.021292 1699000000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)HTDSSEKELEPEAAEEALENGPK ddPTM_HeLa_A486_30min_R1 3 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 0 T(0.271)HT(0.271)DS(0.229)S(0.229)EKELEPEAAEEALENGPK;T(0.269)HT(0.269)DS(0.231)S(0.231)EKELEPEAAEEALENGPK;T(0.266)HT(0.266)DS(0.234)S(0.234)EKELEPEAAEEALENGPK ;; 120.52 6.39E-05 254028000 258406 208293 81355 149196 184947 316525 431343 365750 172183 518958 TRUE FALSE FALSE 240293.0738 191787.1041 112857.8348 347335.8279 161749.2227 277475.3637 323416.4191 282476.7093 187107.9611 389007.539 0.617708013 0.49301642 0.290117346 0.892876855 0.415799712 0.713290453 0.831388564 0.726147133 0.480988008 1 18.56943859 -14 0.089980846 2.216136572 0.298897175 0.321110032 0.177227799 253.387169 1.581323933 59.65057581 4.176572161 1.00E-14 14 -1.917239397 T(ph)IAPALVSK ddPTM_HeLa_A486_30min_R1 1 TIAPALVSK 9 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 1 0 T(1)IAPALVSK 94.465 0.013726 43693000 199480 153950 120280 127590 171110 189660 185480 185470 173580 247140 TRUE FALSE FALSE 185497.4821 141750.4413 166855.6372 297035.968 149647.7883 166261.6775 139070.9422 143242.5298 188626.0542 185254.5354 1.001311421 0.765165835 0.900683143 1.603393771 0.807795544 0.897476961 0.750701957 0.773220097 1.018199386 1 17.49914934 T(ph)IGGGDDSFTTFFCETGAGK ddPTM_HeLa_A485_30min_R1 2 TIGGGDDSFTTFFCETGAGK 20 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 1 0 T(0.455)IGGGDDS(0.225)FT(0.319)T(0.001)FFCETGAGK;T(0.319)IGGGDDS(0.319)FT(0.319)T(0.043)FFCETGAGK ; 189.81 3.85E-19 53847000 55864 59504 55676 64503 75616 53250 69760 63547 58507 81419 TRUE FALSE FALSE 68290.75407 66462.47518 76272.86927 68026.63556 68087.40554 56038.08766 54855.20611 47961.99861 70248.81824 61122.74171 1.117272429 1.087360831 1.247864005 1.112951312 1.11394554 0.916812402 0.897459842 0.784683365 1.149307382 1 15.89942164 -6.206767139 4.486017127 0.932479257 1.141110378 0.484837643 0.09531804 0.175248375 7.521933705 0.031883631 0.031319976 6.21E-07 6.206767139 0.208631122 T(ph)IHTFPCLK ddPTM_HeLa_A485_30min_R1 4 TIHTFPCLK 9 0 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 T(0.999)IHT(0.001)FPCLK;T(1)IHTFPCLK;T(1)IHTFPCLK;T(1)IHTFPCLK ;;; 184.24 3.62E-08 880630000 1476300 1262410 1425930 1808090 2074100 1401510 1995000 1655890 1499510 2256980 TRUE FALSE FALSE 1804697.842 1410037.868 1953440.845 1906861.378 1867595.321 1474890.896 1568751.952 1249780.381 1800447.903 1694356.423 1.065122909 0.832196726 1.152910225 1.125419276 1.102244661 0.870472633 0.925868921 0.737613624 1.062614618 1 20.69230596 -6.265420992 24.87884017 0.903324492 1.05245598 0.257045864 0.114164484 438.151303 2737748 0.039806086 0.03640644 5.43E-07 6.265420992 0.149131487 T(ph)IHTFPCLK ddPTM_HeLa_A486_30min_R1 3 TIHTFPCLK 9 0 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 T(1)IHTFPCLK;T(1)IHTFPCLK;T(1)IHTFPCLK ;; 214.26 9.81E-11 1274410000 1184590 2271380 1830280 873130 2573140 2374380 2590680 2590110 1848600 1872180 TRUE FALSE FALSE 1101556.358 2091387.577 2539013.433 2032690.766 2250392.788 2081453.137 1942464.463 2000398.495 2008838.136 1403373.942 0.784934311 1.490256812 1.809220876 1.448431316 1.603558909 1.483177843 1.384138899 1.425420862 1.431434685 1 20.42046805 -9.1990223 0.866669869 0.987602268 1.453957838 0.210842281 0.24563294 16.92519381 10.4716104 0.993357862 0.080645289 6.32E-10 9.1990223 0.466355571 T(ph)KFASDDEHDEHDENGATGPVK ddPTM_HeLa_A485_30min_R1 4 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 0 T(0.768)KFAS(0.232)DDEHDEHDENGATGPVK;T(0.604)KFAS(0.396)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK;T(0.759)KFAS(0.241)DDEHDEHDENGATGPVK ;;; 287.66 9.22E-74 10773950000 5426378 3138379 2279550 8402980 5203860 4256170 7913830 6463150 3930594 11136390 TRUE FALSE FALSE 6633457.065 3505385.124 3122850.405 8862013.52 4685745.427 4479016.48 6222975.57 4878052.329 4719428.162 8360292.923 0.793447924 0.419289749 0.373533611 1.060012323 0.560476226 0.53574875 0.744348987 0.583478638 0.56450512 1 22.99512206 -10.42303363 2.779967556 1.009339459 0.62298271 0.261554914 0.18841331 18202856.43 20190002.67 1344982.364 0.049542128 3.78E-11 10.42303363 -0.386356749 T(ph)KFASDDEHDEHDENGATGPVK ddPTM_HeLa_A486_30min_R1 4 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 0 T(0.765)KFAS(0.235)DDEHDEHDENGATGPVK;T(0.5)KFAS(0.5)DDEHDEHDENGATGPVK;T(0.624)KFAS(0.376)DDEHDEHDENGATGPVK;T(0.611)KFAS(0.389)DDEHDEHDENGATGPVK ;;; 280.32 4.67E-73 12504000000 7858900 6458550 2790020 3793190 5584900 9129070 11352450 10086310 5613870 11679190 TRUE FALSE FALSE 7308031.693 5946750.976 3870390.463 8830738.017 4884389.765 8002818.161 8511946.936 7789877.396 6100484.772 8754644.805 0.834760502 0.679268104 0.442095659 1.008691753 0.55791981 0.914122542 0.972277817 0.889799366 0.696828359 1 23.06161722 -6.290540082 24.37944371 0.892572627 0.705459036 0.259841539 0.160363492 765.9967515 641719.5472 0.055427778 0.048891814 5.12E-07 6.290540082 -0.187113591 T(ph)KFASDDEHDEHDENGATGPVKR ddPTM_HeLa_A485_30min_R1 1 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 0 T(0.5)KFAS(0.5)DDEHDEHDENGATGPVKR 68.639 0.0083992 448730000 73133 80738 41573 73633 111050 98756 180910 218400 57900 120790 TRUE FALSE FALSE 89401.18354 90179.60677 56952.5827 77655.38434 99993.47208 103926.7115 142257.1006 164837.0576 69519.99891 90679.27598 0.985905352 0.994489709 0.628066138 0.856374111 1.102715819 1.146091103 1.568793962 1.817802974 0.766658072 1 16.46848525 -6.140879602 2.013842357 1.34491206 0.862629425 0.274395817 0.290459632 0.379344031 3.035016421 0.111959943 0.111612744 7.23E-07 6.140879602 -0.482282635 T(ph)KSDES(ph)GEEKNGDEDCQR ddPTM_HeLa_A485_30min_R1 1 TKSDESGEEKNGDEDCQR 18 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.506)KS(0.506)DES(0.989)GEEKNGDEDCQR 67.413 0.0063072 184190000 197420 108650 67879 635770 194090 161520 369960 239160 129140 848100 TRUE FALSE FALSE 241335.3979 121355.6724 92990.26678 670500.5052 174765.7181 169976.9374 290915.0237 180505.635 155057.2135 636684.2781 0.379050349 0.190605731 0.146053971 1.053113024 0.274493535 0.266972098 0.456921953 0.283508862 0.243538625 1 19.28021861 -10.38150574 3.3123189 1.005632234 0.369248341 0.37614999 0.244903175 121289223 167009333 6557070.164 0.061773029 4.15E-11 10.38150574 -0.636383893 T(ph)KSDES(ph)GEEKNGDEDCQR ddPTM_HeLa_A486_30min_R1 1 TKSDESGEEKNGDEDCQR 18 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.52)KS(0.52)DES(0.961)GEEKNGDEDCQR 71.656 0.0050377 364160000 421630 377710 92777 770530 252230 585870 1036500 806630 279280 1609100 TRUE FALSE FALSE 392075.9143 347778.884 128702.7391 1793832.78 220592.9614 513591.3161 777156.737 622977.9576 303488.2153 1206170.887 0.325058347 0.288333011 0.10670357 1.487212799 0.182886989 0.425803111 0.644317274 0.516492285 0.25161295 1 20.20200289 -11.24347958 2.175143779 2.759301886 0.480500299 0.153786326 0.372340024 38459674.42 5965180.77 332978059.8 0.092437881 5.71E-12 11.24347958 -2.278801587 T(ph)KSLIAQDHR ddPTM_HeLa_A486_30min_R1 1 TKSLIAQDHR 10 1 E9PB39;H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 E9PB39 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 0 T(0.708)KS(0.292)LIAQDHR 106.13 0.0011073 289640000 654520 598780 387180 382140 720100 868890 1150000 1161200 650770 1064100 TRUE FALSE FALSE 608641.5279 551330.4921 537106.465 889641.2323 629778.3433 761695.186 862257.8365 896820.1088 707179.2676 797642.4339 0.763050588 0.691200052 0.673367467 1.115338395 0.789549699 0.95493313 1.08100798 1.124338514 0.886586818 1 19.60538264 -5.250126072 24.97937152 0.991878873 0.707405413 0.631624998 0.099349818 480.9745527 1061972.393 0.027779204 0.047571445 5.62E-06 5.250126072 -0.28447346 T(ph)KSPKPAESPQSATK ddPTM_HeLa_A485_30min_R1 1 TKSPKPAESPQSATK 15 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 T(0.59)KS(0.41)PKPAESPQSATK 125.88 2.56E-05 239410000 136850 99352 39669 295190 126980 125260 280450 254350 98536 393650 TRUE FALSE FALSE 167291.8104 110970.3522 54344.21386 311315.4822 114337.4253 131818.4199 220529.5664 191970.2637 118311.2714 295520.2996 0.56609245 0.375508391 0.183893336 1.053448723 0.386902103 0.446055381 0.746241685 0.649600938 0.400349051 1 18.17289771 -14 0.189480991 2.939371363 0.454496533 0.266294428 0.229751558 190.3860527 1.860443845 139.8094208 0.632690852 1.00E-14 14 -2.48487483 T(ph)KSPTDDEVTPSAVVR ddPTM_HeLa_A486_30min_R1 1 TKSPTDDEVTPSAVVR 16 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 T(0.53)KS(0.42)PT(0.05)DDEVTPSAVVR 70.826 0.010048 699250000 218840 163350 88625 86956 154760 212200 275800 272010 136670 399950 TRUE FALSE FALSE 203500.4461 150405.5511 122942.9735 202437.9625 135348.5577 186020.9215 206791.9229 210079.2609 148516.6656 299799.9168 0.678787534 0.501686434 0.410083414 0.675243558 0.45146296 0.620483566 0.689766445 0.700731552 0.495385947 1 18.19364046 -14 0.225276918 3.204255488 0.530085193 0.596993426 0.103192968 106.3155122 1.064633337 106.4952407 0.186695126 1.00E-14 14 -2.674170295 T(ph)KSRS(ph)PS(ph)PAPEKK ddPTM_HeLa_A486_30min_R1 1 TKSRSPSPAPEKK 13 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 T(0.848)KS(0.286)RS(0.879)PS(0.988)PAPEKK 63.337 0.015258 367660000 1215400 640170 238530 1290400 621910 1610600 2082900 1583400 649720 2858100 TRUE FALSE FALSE 1130206.736 589440.5977 330895.2041 3004116.413 543904.2487 1411900.547 1561736.389 1222894.385 706038.2527 2142413.157 0.527539113 0.275129284 0.154449763 1.402211522 0.253874584 0.659023467 0.728961351 0.570802313 0.329552799 1 21.03080529 -11.63062939 2.032448851 9.581239609 0.551443683 0.140457436 0.33757591 9819818.614 335875.8281 390460295.3 0.08807561 2.34E-12 11.63062939 -9.029795925 T(ph)KSSDDLLAGMAGGVTVTNGVK ddPTM_HeLa_A485_30min_R1 1 TKSSDDLLAGMAGGVTVTNGVK 22 1 Q69YQ0-2;Q69YQ0;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 T(0.61)KS(0.311)S(0.079)DDLLAGMAGGVTVTNGVK 277.72 6.36E-73 506470000 539160 332180 184910 971840 474030 454150 901610 870200 328390 1186900 TRUE FALSE FALSE 659094.2819 371025.5614 253315.9037 1024929.158 426833.9088 477928.5918 708973.658 656782.0856 394294.8608 891027.6733 0.739701248 0.416401839 0.284296337 1.150277583 0.479035524 0.536379067 0.795680852 0.737106271 0.442516964 1 19.76511071 -14 0.275160334 3.634975437 0.597082628 0.180612762 0.236475089 391.2337609 3.780730598 588.2843102 0.282573088 1.00E-14 14 -3.037892809 T(ph)KSSDDLLAGMAGGVTVTNGVK ddPTM_HeLa_A486_30min_R1 1 TKSSDDLLAGMAGGVTVTNGVK 22 1 Q69YQ0-2;Q69YQ0;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 T(0.45)KS(0.45)S(0.101)DDLLAGMAGGVTVTNGVK 269.59 4.31E-60 510910000 761270 530060 160590 636030 444450 777810 1157000 994330 454370 1288200 TRUE FALSE FALSE 707908.9042 488056.1152 222774.7487 1480709.983 388702.9367 681851.7104 867506.3625 767942.7651 493755.1574 965626.3352 0.733108531 0.505429582 0.230704922 1.533419221 0.402539701 0.706123772 0.898387224 0.795279434 0.511331495 1 19.8811055 -13.99999995 0.038627771 2.153303481 1.27E-08 0.057334571 0.337218133 2992.305492 8.624790371 424.7612712 132.8118281 1.00E-14 13.99999995 -2.153303469 T(ph)KSVSSMSEFESLLDCSPYLAGGDAR ddPTM_HeLa_A485_30min_R1 1 TKSVSSMSEFESLLDCSPYLAGGDAR 26 1 O94964-2;H0YDM2;O94964;O94964-3;X6R3R3;O94964-4 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 T(0.392)KS(0.392)VS(0.072)S(0.072)MS(0.072)EFESLLDCSPYLAGGDAR 124.32 1.18E-05 113160000 40082 39380 35595 50248 59498 39234 68076 64023 38877 68797 TRUE FALSE FALSE 48998.10262 43985.14844 48763.07173 52992.92101 53574.17021 41288.23157 53531.00647 48321.25887 46679.2573 51647.17401 0.948708299 0.851646761 0.944157597 1.026056546 1.037310777 0.799428669 1.036475035 0.935603153 0.903810483 1 15.65640179 -3.646739664 0.006558715 1.856154069 0.000191343 0.033363567 0.074927546 81286.29225 69.89159287 9336.622045 10466.48791 0.000225559 3.646739664 -1.855962726 T(ph)KSVSSMSEFESLLDCSPYLAGGDAR ddPTM_HeLa_A486_30min_R1 1 TKSVSSMSEFESLLDCSPYLAGGDAR 26 1 O94964-2;H0YDM2;O94964;O94964-3;X6R3R3;O94964-4 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 T(0.472)KS(0.472)VS(0.021)S(0.021)MS(0.014)EFESLLDCSPYLAGGDAR 210.36 1.23E-28 106190000 85537 91213 57715 55639 105730 97859 132180 134410 92372 110770 TRUE FALSE FALSE 79541.29801 83984.94969 80063.79366 129530.4038 92468.35751 85786.15154 99107.16594 103807.7771 100378.8793 83032.47101 0.957954124 1.011471159 0.96424679 1.559996978 1.113640921 1.0331639 1.193595286 1.250207008 1.208911142 1 16.34138801 T(ph)KTPHTFPHSR ddPTM_HeLa_A485_30min_R1 1 TKTPHTFPHSR 11 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 T(0.5)KT(0.5)PHTFPHSR 90.707 0.0030188 432160000 41626 35192 35027 44507 61357 59975 56545 71114 38002 64095 TRUE FALSE FALSE 50885.56009 39307.39827 47984.9449 46938.30471 55248.08164 63115.19826 44463.69882 53673.18 45628.65283 48117.29608 1.057531579 0.816907879 0.997249405 0.975497556 1.148195891 1.311694617 0.924068941 1.115465422 0.948279653 1 15.55426795 -5.626137156 6.012286859 1.084367056 0.950096947 0.176737857 0.118174564 0.332697315 16.72327307 0.035378823 0.045833774 2.37E-06 5.626137156 -0.134270109 T(ph)KTPHTFPHSR ddPTM_HeLa_A486_30min_R1 1 TKTPHTFPHSR 11 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 T(0.5)KT(0.5)PHTFPHSR 109.07 0.00066948 242040000 48108 42333 32028 17137 39391 44468 53081 54148 43740 61476 TRUE FALSE FALSE 44735.87763 38978.37891 44430.09934 39895.80206 34450.21347 38981.99028 39799.57237 41819.68244 47531.41842 46082.00946 0.970788344 0.845848073 0.964152819 0.865756562 0.747584879 0.845926441 0.863668335 0.907505617 1.031452816 1 15.49191601 -7.646379626 3.817758491 1.016010034 0.869280115 0.46966668 0.05999031 0.207023751 5.425557172 0.050242248 0.016416365 2.26E-08 7.646379626 -0.146729918 T(ph)LAMDVMKPR ddPTM_HeLa_A485_30min_R1 2 TLAMDVMKPR 10 1 A0A2R8YGW0;P51795-1;P51795 A0A2R8YGW0 CLCN5 H(+)/Cl(-) exchange transporter 5 1 0 T(1)LAMDVMKPR;T(1)LAMDVMKPR ; 78.653 0.010076 679000000 126926 810290 1289940 50584 878000 546260 386080 623570 745960 93598 TRUE FALSE FALSE 155160.2508 905046.3669 1767142.485 53347.27583 790583.2372 574861.3289 303590.854 470638.4798 895667.3296 70265.74114 2.208192048 12.88033617 25.14941785 0.759221706 11.25133279 8.181246217 4.32060986 6.697979301 12.74685665 1 16.10053384 -5.308547496 24.99997887 6.846790046 13.35949716 0.203268285 6.302559087 672.2804265 356773.5231 1.769836402 2.625099589 4.91E-06 5.308547496 6.512707118 T(ph)LAMDVMKPR ddPTM_HeLa_A486_30min_R1 1 TLAMDVMKPR 10 1 A0A2R8YGW0;P51795-1;P51795 A0A2R8YGW0 CLCN5 H(+)/Cl(-) exchange transporter 5 1 0 T(1)LAMDVMKPR 67.153 0.019127 268790000 96277 196510 753330 10700 664840 56035 90962 162440 218170 17210 TRUE FALSE FALSE 89528.47947 180937.8319 1045039.551 24910.14075 581449.5678 49121.97142 68202.3455 125455.958 237081.1513 12900.50398 6.939921076 14.02564056 81.00765306 1.930943224 45.07184903 3.807755999 5.286796981 9.72488813 18.37766583 1 13.65513981 -6.28007895 24.31530993 8.037685945 30.21623746 0.210761634 21.4223906 966.6756574 1261023.239 7.483087125 6.612180933 5.25E-07 6.28007895 22.17855151 T(ph)LDAEVVEKPAKEETVVENATPDYAAGLVSTQK ddPTM_HeLa_A486_30min_R1 1 TLDAEVVEKPAKEETVVENATPDYAAGLVSTQK 33 2 H0Y3X6;A0A0C4DFX9;Q9H3P2;H7C2C7;Q9H3P2-7 H0Y3X6 NELFA Negative elongation factor A 1 0 T(0.974)LDAEVVEKPAKEET(0.026)VVENATPDYAAGLVSTQK 184.04 6.47E-21 126410000 53787 64466 27910 33298 60473 84809 113430 97332 53418 103600 TRUE FALSE FALSE 50016.80906 59357.47938 38717.49946 77519.42679 52887.91245 74346.12785 85048.61426 75171.62834 58048.31525 77657.88568 0.644066068 0.764345808 0.498564944 0.998217066 0.681037244 0.95735452 1.095170355 0.967984483 0.747487712 1 16.24484481 -5.662976547 1.135362769 0.951481745 0.654493171 0.409226761 0.14176912 0.500003598 1.35237834 0.057952656 0.096255488 2.17E-06 5.662976547 -0.296988573 T(ph)LPWLLCLPFMVHR ddPTM_HeLa_A486_30min_R1 1 TLPWLLCLPFMVHR 14 0 A0A087WWZ6 A0A087WWZ6 PRDM11 1 0 T(1)LPWLLCLPFMVHR 44.294 0.037771 923220000 540670 785800 1298200 93414 1393300 434680 432870 612950 762110 196120 TRUE FALSE FALSE 502771.825 723530.3462 1800897.807 217472.5129 1218539.322 381053.6011 324561.3476 473394.6656 828170.3084 147010.2755 3.419977436 4.921631116 12.25014919 1.479301445 8.288803746 2.592020183 2.207746 3.220146783 5.633417839 1 17.16555747 -6.284748642 24.29888266 3.024242398 6.096148533 0.225988209 2.904020344 897.721855 935831.8146 1.003486176 0.885598986 5.19E-07 6.284748642 3.071906136 T(ph)LQRLSSGFDDIDLPSAVK ddPTM_HeLa_A486_30min_R1 1 TLQRLSSGFDDIDLPSAVK 19 1 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 T(0.633)LQRLS(0.181)S(0.186)GFDDIDLPSAVK 128.97 5.12E-06 309580000 249510 241980 197280 159300 333360 276040 396860 390020 230460 336170 TRUE FALSE FALSE 232020.6375 222804.6235 273672.0993 370858.4506 291546.8803 241984.9914 297561.4304 301220.9601 250436.4584 251990.8439 0.92075027 0.884177457 1.086039854 1.471713991 1.156974102 0.960292793 1.180842232 1.195364702 0.993831579 1 17.94301179 -4.84540475 4.951355771 1.149607112 0.902927378 0.303724742 0.138246725 0.227508419 9.565832184 0.037775778 0.083836491 1.43E-05 4.84540475 -0.246679734 T(ph)LS(ph)VS(ph)RRS(ph)S(ph)EEVK ddPTM_HeLa_A486_30min_R1 1 TLSVSRRSSEEVK 13 2 Q69YQ0-2;Q69YQ0;A0A494C1J1 Q69YQ0-2 SPECC1L Cytospin-A 5 0 T(1)LS(1)VS(1)RRS(1)S(1)EEVK 41.743 0.010023 0 6758.8 7141.4 6712.3 9439.1 11759 12679 13303 15623 7252.9 13082 TRUE FALSE FALSE 6285.043022 6575.489455 9311.482322 21974.70183 10284.07657 11114.79389 9974.448695 12065.98395 7881.587212 9806.18205 0.64092661 0.670545317 0.949552259 2.240902903 1.048734005 1.133447639 1.017159241 1.23044666 0.803736579 1 13.25947583 -5.001813934 24.62278336 1.23244319 0.694313837 0.266475038 0.36716831 78.50985991 1065791.755 0.099131597 0.201454627 9.96E-06 5.001813934 -0.538129353 T(ph)LSALRSPDVGLYGVIPECGETYHSDLAEAK ddPTM_HeLa_A486_30min_R1 1 TLSALRSPDVGLYGVIPECGETYHSDLAEAK 31 1 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 0 T(0.389)LS(0.343)ALRS(0.268)PDVGLYGVIPECGETYHSDLAEAK 135.27 1.44E-06 76342000 16588 19364 13923 9768.6 24809 21177 27912 22149 15688 23544 TRUE FALSE FALSE 15425.26686 17829.52612 19314.35847 22741.79448 21697.22389 18564.39705 20928.12238 17106.15621 17047.84847 17648.42915 0.874030585 1.010261364 1.094395331 1.288601624 1.229413887 1.051900817 1.185834852 0.969273586 0.965969737 1 14.10725216 -9.809478334 8.435729914 0.999999997 1.083491965 0.027307529 0.122901681 9.79E-11 0 0.128854794 0.031251878 1.55E-10 9.809478334 0.083491968 T(ph)LSDDLDEAAKEFQEK ddPTM_HeLa_A485_30min_R1 1 TLSDDLDEAAKEFQEK 16 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 1 0 T(0.5)LS(0.5)DDLDEAAKEFQEK 68.567 0.011325 16566000 30837 23315 13201 58196 36571 34522 59277 57060 18889 89009 TRUE FALSE FALSE 37696.58426 26041.48644 18084.59924 61375.10012 32929.86283 36329.51854 46611.9847 43065.94553 22679.84904 66820.69439 0.564145354 0.389721877 0.270643689 0.918504375 0.492809348 0.543686636 0.697568098 0.64450012 0.339413549 1 16.02800735 -11.42215718 2.332121015 5.388518476 0.545306277 0.374550417 0.178171616 4978621.291 543941.2471 116439847.7 0.044561573 3.78E-12 11.42215718 -4.843212199 T(ph)LSDDLDEAAKEFQEK ddPTM_HeLa_A486_30min_R1 1 TLSDDLDEAAKEFQEK 16 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 1 0 T(0.5)LS(0.5)DDLDEAAKEFQEK 61.102 0.029247 24598000 24127 18212 7432.6 20561 21966 27672 43986 38419 14655 48794 TRUE FALSE FALSE 22435.82189 16768.81479 10310.70177 47867.0471 19210.81946 24258.10999 32980.23756 29671.83238 15925.3072 36575.6648 0.613408451 0.458469173 0.281900598 1.308712975 0.525235004 0.66323087 0.901698923 0.811245196 0.435407184 1 15.15859647 T(ph)LSDESICSNRR ddPTM_HeLa_A485_30min_R1 1 TLSDESICSNRR 12 1 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 T(0.676)LS(0.324)DESICSNRR 101.62 0.00078102 278870000 115790 140220 115190 128890 167790 152580 198900 204590 125890 181990 TRUE FALSE FALSE 141547.086 156617.5092 157803.5745 135930.9343 151084.2385 160568.8529 156403.3901 154413.9817 151154.9683 136623.2423 1.036039576 1.146346014 1.155027299 0.994932722 1.105845799 1.175267474 1.144778791 1.130217517 1.106363498 1 17.05984341 -4.243284527 23.37589945 1.111950215 1.036039416 0.107999784 0.058952194 3480.678955 4481494.445 0.014676334 0.424438857 5.71E-05 4.243284527 -0.075910799 T(ph)LSDPPSPLPHGPPNK ddPTM_HeLa_A485_30min_R1 2 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 T(0.559)LS(0.441)DPPS(0.001)PLPHGPPNK;T(0.56)LS(0.438)DPPS(0.002)PLPHGPPNK ; 113.88 0.00018696 1308450000 945610 1093210 923120 792250 1473470 1065880 1538280 1436620 1132220 1491630 TRUE FALSE FALSE 1155957.682 1221051.4 1264620.502 835528.6114 1326766.153 1121687.829 1209613.911 1084286.692 1359446.169 1119794.092 1.032294857 1.090424934 1.129333072 0.746144865 1.184830463 1.001691147 1.080211013 0.968291135 1.214014414 1 20.09480204 T(ph)LSGSPRPK ddPTM_HeLa_A485_30min_R1 1 TLSGSPRPK 9 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 T(0.92)LS(0.054)GS(0.026)PRPK 70.977 0.016921 165020000 239730 220190 186050 255280 267060 238590 284520 275800 173100 317710 TRUE FALSE FALSE 293057.1114 245939.3051 254877.6372 269225.3 240470.5687 251082.2035 223729.9777 208159.6176 207839.5822 238510.744 1.228695641 1.031145604 1.068621199 1.128776404 1.008216924 1.052708147 0.938028929 0.872747341 0.871405534 1 17.86369473 -6.541358087 1.204287321 0.900413542 1.10253894 0.621428131 0.064521338 0.299227761 0.886470068 0.036742341 0.025721821 2.88E-07 6.541358087 0.202125398 T(ph)LSKLNLCVDKTEK ddPTM_HeLa_A486_30min_R1 1 TLSKLNLCVDKTEK 14 2 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 T(0.765)LS(0.235)KLNLCVDKTEK 76.118 0.0069597 330910000 687580 546580 165170 591570 515270 632660 1106800 1048200 350110 820870 TRUE FALSE FALSE 639384.1927 503267.0102 229128.2474 1377204.856 450640.0319 554608.8416 829866.9335 809547.742 380457.8167 615318.809 1.039110431 0.817896354 0.372373222 2.238197234 0.732368368 0.901335752 1.348677988 1.315655771 0.618310071 1 19.23097457 T(ph)LSPGRR ddPTM_HeLa_A486_30min_R1 1 TLSPGRR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 T(0.996)LS(0.004)PGRR 65.305 0.035756 2716200000 3307700 3497900 2788800 1049300 3792000 3114500 3654300 3526900 2968700 3505500 TRUE FALSE FALSE 3075847.311 3220713.665 3868698.047 2442823.429 3316372.001 2730264.656 2739955.489 2723901.862 3226029.306 2627699.983 1.170547373 1.22567785 1.472275401 0.929643203 1.262081677 1.039032109 1.042720062 1.036610678 1.227700775 1 21.32536914 -5.267711439 24.99973187 1.083075424 1.283117972 0.40169672 0.118693777 511.101218 2037192.388 0.032336797 0.049258537 5.40E-06 5.267711439 0.200042548 T(ph)LSSPSNRPSGETSVPPPPAAPPFLPVGR ddPTM_HeLa_A485_30min_R1 1 TLSSPSNRPSGETSVPPPPAAPPFLPVGR 29 1 H3BUF6 H3BUF6 ATXN2L 1 0 T(0.325)LS(0.325)S(0.325)PS(0.006)NRPS(0.006)GET(0.006)S(0.006)VPPPPAAPPFLPVGR 57.78 0.025977 107230000 18870 36079 25008 28237 43759 35526 51337 80579 29031 32086 TRUE FALSE FALSE 23067.5664 40298.1252 34259.49987 29779.51581 39402.20031 37386.08643 40368.43057 60816.87391 34857.25541 24087.5507 0.957655126 1.672985589 1.422290722 1.236303192 1.635791069 1.552091655 1.675904332 2.524825984 1.447106675 1 14.55600008 -6.190020699 1.549469253 1.768556956 1.357626394 0.089299848 0.399583871 0.72239601 3.466164381 0.167434746 0.160533574 6.46E-07 6.190020699 -0.410930562 T(ph)LSSSSMDLSRR ddPTM_HeLa_A485_30min_R1 1 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 T(0.401)LS(0.331)S(0.133)S(0.133)S(0.003)MDLSRR 84.566 0.00298 255360000 71460 106580 91154 58955 133420 94077 148470 206300 68793 66524 TRUE FALSE FALSE 87356.03047 119043.6039 124875.6578 62175.56237 120136.2363 99002.72625 116748.1716 155704.6015 82599.12409 49940.79108 1.749191965 2.383694797 2.500474164 1.244985532 2.405573355 1.982402043 2.337731723 3.117784043 1.653941043 1 15.60793105 -6.746787239 24.3017474 2.203846277 2.060622466 0 0.61563436 1216.78403 2018132.662 0.228372671 0.176035741 1.79E-07 6.746787239 -0.143223811 T(ph)LTEPSVDFNHSDDFTPISTVQK ddPTM_HeLa_A485_30min_R1 1 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 T(0.442)LT(0.442)EPS(0.088)VDFNHS(0.028)DDFTPISTVQK 113.5 0.00018744 140530000 68171 54082 42773 82079 83446 60080 97389 87543 54445 103060 TRUE FALSE FALSE 83335.40376 60406.41945 58596.51263 86562.76793 75137.82324 63225.6959 76581.04456 66072.94199 65371.6121 77369.03868 1.077115668 0.780757012 0.757363845 1.118829566 0.971161391 0.817196349 0.989815123 0.853997195 0.844932459 1 16.23946873 -4.228478992 23.19594055 0.903453829 1.077116541 0.187122334 0.108378189 10196.34778 7175380.404 0.02761085 3.76233636 5.91E-05 4.228478992 0.173662712 T(ph)LTPPLRR ddPTM_HeLa_A485_30min_R1 4 TLTPPLRR 8 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.727)LT(0.273)PPLRR;T(0.843)LT(0.157)PPLRR;T(0.872)LT(0.128)PPLRR;T(0.875)LT(0.125)PPLRR ;;; 108.43 0.0011229 4038780000 540531 631230 558650 732920 867350 643280 910850 886120 567300 948970 TRUE FALSE FALSE 660770.2561 705046.8575 765317.8824 772957.5637 780993.5885 676961.1461 716239.4565 668797.6806 681151.9064 712409.2435 0.927514995 0.98966551 1.074267199 1.084990925 1.096270993 0.950241946 1.005376422 0.938782991 0.956124464 1 19.44234671 -6.285395187 24.98848103 0.968483551 1.037058479 0.291209044 0.050155756 1090.096494 1137084.193 0.019309966 0.017039985 5.18E-07 6.285395187 0.068574928 T(ph)LTPPLRR ddPTM_HeLa_A486_30min_R1 3 TLTPPLRR 8 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.802)LT(0.198)PPLRR;T(0.873)LT(0.127)PPLRR;T(0.775)LT(0.225)PPLRR ;; 90.906 0.0032897 1893850000 419880 422960 290924 179477 459630 441310 548570 519340 360440 538520 TRUE FALSE FALSE 390448.5803 389443.1092 403577.564 417831.5263 401978.9195 386865.6591 411311.9838 401097.6191 391683.2294 403671.0868 0.967244356 0.964753538 0.999768319 1.035079152 0.995808054 0.958368513 1.018928522 0.99362484 0.970302908 1 18.62282073 -4.759789965 24.96454317 0.997051788 0.965998935 0.262575547 0.020418215 56.30642922 852152.0342 0.005495275 0.013057922 1.74E-05 4.759789965 -0.031052852 T(ph)LVLLMGK ddPTM_HeLa_A485_30min_R1 1 TLVLLMGK 8 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 1 0 T(1)LVLLMGK 130.66 0.0026399 16126000 31257 58977 37570 77467 58085 80334 63780 85591 47432 82164 TRUE FALSE FALSE 38210.01181 65873.84712 51468.70642 81698.82605 52301.85345 84540.16402 50152.88197 64599.67305 56951.16733 61682.02692 0.619467513 1.067958535 0.83441983 1.324515911 0.847926958 1.370580188 0.81308745 1.047301398 0.923302462 1 15.91256255 -4.258040219 24.44410731 1.028909691 0.6194673 0.306671508 0.183066599 282.8791536 2034117.147 0.041922602 0.295479303 5.52E-05 4.258040219 -0.409442391 T(ph)LVLLMGK ddPTM_HeLa_A486_30min_R1 2 TLVLLMGK 8 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 1 0 T(1)LVLLMGK;T(1)LVLLMGK ; 132.01 0.0025573 31090000 131839 96889 85105 70887 151034 125433 115859 129791 118870 153130 TRUE FALSE FALSE 122597.7669 89211.16278 118059.9352 165028.5184 132089.9074 109958.3518 86869.85277 100240.4226 129173.7473 114785.2513 1.068062016 0.77720057 1.028528786 1.437715356 1.150756791 0.957948434 0.756803263 0.873286607 1.125351435 1 16.80857776 -6.397161244 5.74395118 0.919256531 1.089715933 0.151908487 0.174490453 0.469278887 20.03776149 0.068875556 0.060354076 4.01E-07 6.397161244 0.170459402 T(ph)MEGRSSKVYFTINMNLDVS(ph)DEK ddPTM_HeLa_A485_30min_R1 1 TMEGRSSKVYFTINMNLDVSDEK 23 2 P57060 P57060 RWDD2B RWD domain-containing protein 2B 2 0 T(0.821)MEGRS(0.083)S(0.091)KVY(0.005)FT(0.001)INMNLDVS(0.999)DEK 57.496 0.028106 1040400000 69393 239470 716610 95246 262310 101210 190400 111940 274420 137960 TRUE FALSE FALSE 84829.23345 267473.9334 981713.8596 100449.0478 236193.4954 106509.1991 149719.4846 84486.53948 329493.5769 103569.111 0.819059203 2.582564733 9.478828682 0.969874578 2.280539952 1.028387693 1.445599785 0.815750359 3.181388483 1 16.66023426 T(ph)NGITYASVALATSK ddPTM_HeLa_A485_30min_R1 2 TNGITYASVALATSK 15 0 A0A0U1RQY8;A0A669KA36;E7ET55;A0A669KB88;F5H748;B7ZLR4;P35670-2;P35670-3;P35670-4;P35670 A0A0U1RQY8 ATP7B Copper-transporting ATPase 2;WND/140 kDa 1 0 T(0.33)NGIT(0.33)Y(0.009)AS(0.33)VALATSK;T(0.33)NGIT(0.33)Y(0.009)AS(0.33)VALATSK ; 79.311 0.0062923 1073700000 564030 2268770 2745000 73205 1809710 1564450 793900 1265640 1785110 263080 TRUE FALSE FALSE 689496.5276 2534082.916 3760489.729 77204.00379 1629528.918 1646362.183 624276.7794 955239.8056 2143365.203 197498.9976 3.491139377 12.83086469 19.04055096 0.390908332 8.250821208 8.336053361 3.160911128 4.836681791 10.85253712 1 17.59148581 -5.272568446 24.99913035 5.586175541 11.89185341 0.287814335 4.684248604 934.2430981 2098580.789 1.311498091 1.965526557 5.34E-06 5.272568446 6.30567787 T(ph)NKSPEAKPLPGK ddPTM_HeLa_A485_30min_R1 2 TNKSPEAKPLPGK 13 2 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 T(0.617)NKS(0.383)PEAKPLPGK;T(0.738)NKS(0.262)PEAKPLPGK ; 114.63 0.00021602 1300790000 2303930 850370 588570 5059700 2000990 1317190 2869900 1904440 1279600 7451900 TRUE FALSE FALSE 2816431.28 949813.3743 806306.5354 5336098.599 1801764.41 1386156.032 2256722.42 1437373.104 1536403.983 5594278.472 0.503448531 0.169782999 0.144130568 0.953849299 0.322072707 0.247781021 0.403398299 0.256936281 0.274638453 1 22.41552064 -10.59111691 3.026765574 1.036818177 0.362531342 0.426386326 0.221295172 331794808.6 362573084.4 97877186.09 0.055429621 2.56E-11 10.59111691 -0.674286835 T(ph)PAPEPEPCEASELPAKR ddPTM_HeLa_A485_30min_R1 2 TPAPEPEPCEASELPAKR 18 1 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR ; 122.77 1.32E-05 827960000 533180 509460 439510 580160 548160 466150 575630 454260 465400 695370 TRUE FALSE FALSE 651784.0516 569036.9153 602103.0385 611852.6718 493583.2657 490556.8932 452641.948 342852.0227 558801.5111 522027.0563 1.248563736 1.090052533 1.153394314 1.172070804 0.945512804 0.939715456 0.867085226 0.6567706 1.070445496 1 18.99376506 -5.864654649 2.811761342 0.884774467 1.162745427 0.562817443 0.108244275 0.189463303 3.030146354 0.035278812 0.041596412 1.37E-06 5.864654649 0.27797096 T(ph)PAPEPEPCEASELPAKR ddPTM_HeLa_A486_30min_R1 3 TPAPEPEPCEASELPAKR 18 1 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR ;; 134.29 4.74E-06 1113940000 780460 974740 613700 285016 770780 828230 831240 857120 754900 926700 TRUE FALSE FALSE 725753.7843 897498.0525 851341.0755 663531.6519 674101.5852 726051.4034 623254.96 661972.4868 820335.3398 694648.2882 1.04477877 1.292017943 1.225571401 0.955205193 0.97042143 1.045207216 0.897223776 0.952960654 1.180936243 1 19.40592318 -5.259419252 24.96455983 0.99465319 1.197912238 0.465850289 0.091504391 142.8772511 1765649.529 0.024868687 0.040481942 5.50E-06 5.259419252 0.203259048 T(ph)PCEEILVK ddPTM_HeLa_A485_30min_R1 1 TPCEEILVK 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 T(1)PCEEILVK 107.06 0.0052397 140160000 127910 106240 101660 144320 127600 108410 137740 111710 100650 176720 TRUE FALSE FALSE 156363.1382 118663.8438 139268.2644 152203.8362 114895.696 114086.18 108310.7238 84312.94735 120849.5318 132666.9563 1.178614047 0.894449132 1.049758495 1.147262592 0.866046069 0.859944203 0.816410708 0.635523341 0.91092413 1 17.01744955 -5.883466989 5.835536581 0.824699266 1.053016485 0.473383653 0.111988597 0.181554015 8.584630124 0.034611682 0.039474363 1.31E-06 5.883466989 0.228317219 T(ph)PCEEILVK ddPTM_HeLa_A486_30min_R1 2 TPCEEILVK 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 T(1)PCEEILVK;T(1)PCEEILVK ; 101.95 0.0077985 356240000 249710 308720 169605 85966 235478 263120 280290 279150 240348 299690 TRUE FALSE FALSE 232206.6185 284255.9029 235280.5982 200133.1925 205942.1535 230658.9296 210158.4774 215593.6388 261181.5582 224645.6733 1.033657204 1.265352226 1.047340884 0.890883806 0.916742132 1.026767737 0.935510906 0.95970528 1.16263783 1 17.77729175 -4.992576287 24.4822702 0.97898822 1.151215262 0.356047556 0.087862263 134.5768362 443801.9046 0.022351945 0.046368064 1.02E-05 4.992576287 0.172227042 T(ph)PDGNKS(ph)PAPKPSDLRPGDVSSK ddPTM_HeLa_A485_30min_R1 1 TPDGNKSPAPKPSDLRPGDVSSK 23 3 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 2 0 T(1)PDGNKS(0.997)PAPKPS(0.003)DLRPGDVSSK 95.823 0.0095828 699050000 284200 87547 62939 543120 174390 140070 218220 120220 127550 646380 TRUE FALSE FALSE 347419.3095 97784.86009 86222.75521 572789.2703 157027.1193 147403.8486 171595.5143 90735.8565 153148.115 485249.3617 0.715960364 0.20151466 0.177687519 1.180401904 0.323600878 0.303769279 0.353623369 0.186988101 0.315607041 1 18.88836679 -10.90975404 6.799012199 1.143172017 0.41191309 0.260630809 0.294092987 0.133652408 0.001774019 0.0596289 0.06999295 1.23E-11 10.90975404 -0.731258928 T(ph)PDGNKS(ph)PAPKPSDLRPGDVSSK ddPTM_HeLa_A486_30min_R1 3 TPDGNKSPAPKPSDLRPGDVSSK 23 3 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 2 0 T(1)PDGNKS(1)PAPKPSDLRPGDVSSK;T(1)PDGNKS(1)PAPKPSDLRPGDVSSK;T(1)PDGNKS(1)PAPKPSDLRPGDVSSK ;; 102.6 0.0035855 2010690000 1145310 1081420 284618 803080 594110 1594700 1776870 1369070 778280 2182580 TRUE FALSE FALSE 1065029.683 995724.3407 394829.7119 1869610.825 519591.1839 1397962.128 1332278.332 1057362.648 845741.937 1636047.762 0.650977134 0.608615692 0.241331409 1.142760541 0.317589251 0.854475132 0.814327285 0.646290819 0.516942082 1 20.64178344 -5.234117993 24.99996512 0.729576715 0.511138945 0.18283842 0.242974961 1443.153729 1320531.395 0.062938131 0.108979477 5.83E-06 5.234117993 -0.21843777 T(ph)PDRSMSPK ddPTM_HeLa_A485_30min_R1 1 TPDRSMSPK 9 1 P51828;F5H4D1 P51828 ADCY7 Adenylate cyclase type 7 1 0 T(0.5)PDRS(0.5)MSPK 64.297 0.022313 330370000 539850 238450 281650 1049400 711510 364660 698460 519450 403780 1270200 TRUE FALSE FALSE 659937.77 266334.6533 385844.0554 1106726.065 640669.5661 383753.0337 549228.3151 392054.073 484814.9423 953562.5163 0.69207604 0.279304869 0.404634252 1.160622451 0.671869495 0.4024414 0.575975152 0.411146691 0.508424916 1 19.862968 -9.808706059 4.174571011 1.000004401 0.565455299 0.236695905 0.233039486 46901937.82 110355425.9 3482.451846 0.063215152 1.55E-10 9.808706059 -0.434549102 T(ph)PDTIRR ddPTM_HeLa_A485_30min_R1 3 TPDTIRR 7 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 T(0.998)PDT(0.002)IRR;T(0.988)PDT(0.012)IRR;T(0.999)PDT(0.001)IRR ;; 81.547 0.0098768 1481200000 623740 1038880 958350 560050 905020 955120 1014940 1079560 760180 733860 TRUE FALSE FALSE 762488.8111 1160367.979 1312883.545 590644.1134 814913.0311 1005128.606 798089.7777 814796.2173 912741.1532 550922.2077 1.384022645 2.106228362 2.383065208 1.072100752 1.479179855 1.824447431 1.448643323 1.478967821 1.656751426 1 19.07148909 -10.9356477 0.117971109 7.05E-12 2.101103001 0.254302358 0.351594539 86.66751755 1.486233858 29.44658221 4.779091749 1.16E-11 10.9356477 2.101103001 T(ph)PDTIRR ddPTM_HeLa_A486_30min_R1 4 TPDTIRR 7 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 1 0 T(0.997)PDT(0.003)IRR;T(0.994)PDT(0.006)IRR;T(0.999)PDT(0.001)IRR;T(1)PDTIRR ;;; 100.25 0.0038889 1728190000 994880 992070 846400 311128 1062600 791080 923490 934690 815290 1145360 TRUE FALSE FALSE 925144.0496 913454.7601 1174148.747 724321.7075 929318.7996 693484.5927 692423.0343 721881.4911 885959.9936 858554.401 1.077560197 1.063945114 1.36758806 0.843652664 1.082422731 0.807735179 0.80649873 0.840810425 1.031920625 1 19.71155003 -6.246251025 23.24135674 0.881762762 1.087816277 0.320593383 0.137091764 373.323405 571262.029 0.04567271 0.045461811 5.67E-07 6.246251025 0.206053515 T(ph)PDTSTYCYETAEK ddPTM_HeLa_A485_30min_R1 4 TPDTSTYCYETAEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.997)PDT(0.003)STYCYETAEK;T(1)PDTSTYCYETAEK;T(1)PDTSTYCYETAEK;T(0.947)PDT(0.053)STYCYETAEK ;;; 420.65 2.37E-161 5602790000 914380 728083 682410 1142440 988210 726763 980780 872710 802310 1297570 TRUE FALSE FALSE 1117780.676 813225.9734 934861.8564 1204848.604 889820.3426 764815.1869 771228.3408 658676.5041 963326.2578 974109.679 1.147489549 0.834840256 0.959709031 1.236871607 0.913470384 0.785142786 0.791726391 0.676183102 0.988929972 1 19.89372469 -5.994715607 24.93178853 0.827359394 1.030101426 0.313963533 0.134696677 163.7165484 772406.7065 0.041662752 0.047092139 1.01E-06 5.994715607 0.202742032 T(ph)PDTSTYCYETAEK ddPTM_HeLa_A486_30min_R1 6 TPDTSTYCYETAEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.999)PDT(0.001)STYCYETAEK;T(0.498)PDT(0.498)S(0.004)TYCYETAEK;T(0.658)PDT(0.338)S(0.004)TYCYETAEK;T(0.982)PDT(0.018)STYCYETAEK;T(0.47)PDT(0.47)S(0.06)T(0.001)YCYETAEK;T(0.901)PDT(0.086)S(0.012)T(0.002)YCYETAEK ;;;;; 383.88 2.07E-124 5819850000 1118604 1321066 731670 454446.5 1125595 1312450 1470582 1323290 999986 1443114 TRUE FALSE FALSE 1040195.636 1216379.919 1014992.219 1057974.418 984412.3793 1150533.263 1102626.829 1022005.754 1086665.592 1081748.861 0.961586994 1.124456852 0.938288225 0.978022216 0.910019335 1.063586295 1.019300199 0.94477174 1.004545168 1 20.04493417 -4.786583402 24.99968532 0.98183213 1.043022172 0.161344918 0.055351615 341.1110088 339152.4945 0.014113412 0.029397953 1.63E-05 4.786583402 0.061190042 T(ph)PEDGDYSYEIIEK ddPTM_HeLa_A485_30min_R1 2 TPEDGDYSYEIIEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PEDGDYSYEIIEK;T(1)PEDGDYSYEIIEK ; 237.46 1.63E-34 283650000 132893 136611 95430 166345 125081 104442 152217 119278 109803 187422 TRUE FALSE FALSE 162454.5894 152586.4681 130733.5282 175432.0061 112627.4965 109910.4216 119694.5945 90024.88348 131839.4549 140701.1446 1.154607447 1.084472116 0.929157531 1.246841357 0.800473207 0.781162242 0.850700929 0.639830498 0.937017643 1 17.10227454 -5.781369477 24.99987263 0.814962277 1.089918925 0.554110259 0.117098439 168.0076779 210744.1496 0.034607548 0.039291744 1.65E-06 5.781369477 0.274956648 T(ph)PEDGDYSYEIIEK ddPTM_HeLa_A486_30min_R1 2 TPEDGDYSYEIIEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PEDGDYSYEIIEK;T(1)PEDGDYSYEIIEK ; 130.2 9.79E-05 222060000 138603 163428 90980 41502.2 128022 146157 147308 136657 130449 163486 TRUE FALSE FALSE 128887.6454 150477.3701 126209.8925 96619.21901 111964.287 128125.6354 110449.9803 105543.1843 141756.4244 122548.0415 1.051731581 1.22790514 1.029880943 0.78841912 0.913635874 1.045513529 0.901279033 0.861239258 1.156741655 1 16.9029879 -4.995185778 19.86388594 0.943863584 1.13708831 0.338401776 0.103947808 10.70376725 44143.97172 0.026624173 0.054772938 1.01E-05 4.995185778 0.193224726 T(ph)PEEGGYSYDISEK ddPTM_HeLa_A485_30min_R1 6 TPEEGGYSYDISEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK ;;;;; 261.35 4.51E-41 5583600000 2003560 1791800 1468990 2428560 2045470 1705370 2234900 2066670 1849520 3093510 TRUE FALSE FALSE 2449245.01 2001335.423 2012430.531 2561226.083 1841815.825 1794660.536 1757395.358 1559815.942 2220701.699 2322354.889 1.054638557 0.86176985 0.866547374 1.102857318 0.793081124 0.772776179 0.756729889 0.671652705 0.9562284 1 21.14715702 -5.811466545 24.99979602 0.802627925 0.956125923 0.266000985 0.114435368 133.8371196 66880.83878 0.03450384 0.03912374 1.54E-06 5.811466545 0.153497998 T(ph)PEEGGYSYDISEK ddPTM_HeLa_A486_30min_R1 6 TPEEGGYSYDISEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK ;;;;; 260.96 4.69E-41 6953000000 2556060 2555810 1396640 901899 1888990 2661200 2703900 2418930 2245240 3166140 TRUE FALSE FALSE 2376893.394 2353278.307 1937456.411 2099666.451 1652055.26 2332888.201 2027355.621 1868192.444 2439859.211 2373317.936 1.001506523 0.991556282 0.81634929 0.88469666 0.696095216 0.982964889 0.854228416 0.787164844 1.028037236 1 21.17847395 -9.9479394 13.91930849 1.00000309 0.886495696 0.084281758 0.102805361 0 0 0.098793589 0.023960965 1.13E-10 9.9479394 -0.113507394 T(ph)PEFLR ddPTM_HeLa_A486_30min_R1 3 TPEFLR 6 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 0 T(1)PEFLR;T(1)PEFLR;T(1)PEFLR ;; 136.33 0.024815 3068000000 551980 716270 527946 171810 553283 562680 524720 488110 561800 599610 TRUE FALSE FALSE 513289.0524 659510.1566 732380.8301 399982.3628 483885.087 493262.2625 393429.5061 376978.0084 610497.2763 449463.7532 1.142003218 1.46732668 1.629454711 0.889910165 1.076583114 1.097446143 0.875330888 0.838728386 1.358279221 1 18.77784525 -5.269156268 24.97164081 1.012371757 1.418368054 0.504847046 0.178445221 442.9525942 1433382.048 0.049855854 0.075524316 5.38E-06 5.269156268 0.405996298 T(ph)PELPEPSVK ddPTM_HeLa_A485_30min_R1 4 TPELPEPSVK 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(1)PELPEPSVK;T(1)PELPEPSVK;T(1)PELPEPSVK;T(1)PELPEPSVK ;;; 175.49 4.87E-07 2463700000 2235040 2137080 1814470 2531150 2524740 2537100 3194590 3344100 2066460 3195930 TRUE FALSE FALSE 2732216.937 2386992.916 2485717.959 2669420.315 2273368.021 2669938.633 2512039.749 2523954.232 2481179.567 2399243.468 1.138782693 0.994893994 1.0360424 1.112609183 0.947535359 1.112825217 1.04701327 1.051979203 1.034150807 1 21.19414813 -7.970404234 0.005915032 1.20E-07 2.07239168 0.094605452 0.053981928 12883.82562 52.13703409 9198.449192 9063.655002 1.07E-08 7.970404234 2.07239156 T(ph)PELPEPSVK ddPTM_HeLa_A486_30min_R1 4 TPELPEPSVK 10 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(1)PELPEPSVK;T(1)PELPEPSVK;T(1)PELPEPSVK;T(1)PELPEPSVK ;;; 191.52 2.54E-09 3399130000 2616040 2928310 1710510 997910 2661200 2852090 3171120 2965420 2266090 3408080 TRUE FALSE FALSE 2432669.105 2696260.051 2372865.281 2323184.912 2327407.481 2500228.134 2377672.235 2290258.601 2462516.506 2554674.585 0.952242262 1.055422114 0.928832696 0.909385847 0.911038727 0.97868752 0.930714326 0.896497195 0.963925707 1 21.2847081 -4.788939628 24.99987251 0.935127467 1.003832221 0.297075092 0.038797688 198.4023038 180362.832 0.009634421 0.020063218 1.63E-05 4.788939628 0.068704753 T(ph)PEMIIQKPK ddPTM_HeLa_A485_30min_R1 1 TPEMIIQKPK 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 T(1)PEMIIQKPK 79.633 0.009337 14137000000 296050 197400 184650 508200 363520 245710 347000 289590 245650 736170 TRUE FALSE FALSE 361905.3011 220484.2128 252959.7189 535961.6792 327326.6724 258574.9957 272860.6153 218567.5984 294949.7018 552656.3672 0.654846886 0.398953538 0.457716103 0.969791919 0.592278841 0.467876625 0.493725634 0.395485534 0.533694569 1 19.07602319 -10.01793327 4.848792476 1.000006453 0.549086386 0.415557201 0.159506234 42966561.91 88771824.39 2176.607109 0.040833469 9.60E-11 10.01793327 -0.450920066 T(ph)PENLIT(ph)EIR ddPTM_HeLa_A486_30min_R1 4 TPENLITEIR 10 0 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 2 0 T(1)PENLIT(1)EIR;T(1)PENLIT(1)EIR;T(1)PENLIT(1)EIR;T(1)PENLIT(1)EIR ;;; 57.532 0.021938 2373430000 68268.6 57069.2 47180.8 24791 65497.9 74772.5 78056.3 65622 50386.6 91147.5 TRUE FALSE FALSE 63483.32368 52546.82875 65450.46931 57714.70087 57282.54264 65547.82918 58525.78814 50681.30312 54754.15106 68323.57273 0.929156968 0.769087837 0.957948577 0.844726038 0.838400867 0.95937356 0.856597303 0.741783562 0.801394729 1 16.0600958 -7.00632914 24.9655104 0.822791572 0.88009232 0.011258614 0.082757687 696.2811301 2746502.404 0.033916068 0.021987356 9.86E-08 7.00632914 0.057300749 T(ph)PENLITEIR ddPTM_HeLa_A485_30min_R1 3 TPENLITEIR 10 0 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 T(1)PENLITEIR;T(1)PENLITEIR;T(1)PENLITEIR ;; 155.88 9.37E-06 340923000 75565 81418 95958 80053 100058 74932 84525 80727 78913 91710 TRUE FALSE FALSE 92374.17355 90939.12686 131456.8573 84426.09269 90095.8742 78855.32365 66465.54324 60928.57667 94750.11527 68848.3848 1.341704295 1.320860716 1.90936734 1.226261051 1.30861275 1.145347475 0.965390015 0.884967409 1.376214061 1 16.07113519 -5.958619875 1.580411244 1.054188576 1.49118154 0.441059801 0.205532941 0.35245153 1.803488621 0.080935658 0.092977505 1.10E-06 5.958619875 0.436992964 T(ph)PENLITEIR ddPTM_HeLa_A486_30min_R1 4 TPENLITEIR 10 0 Q5VY60;Q7Z4H7-3;Q7Z4H7;Q5SYF9 Q5VY60 HAUS6 HAUS augmin-like complex subunit 6 1 0 T(1)PENLITEIR;T(1)PENLITEIR;T(1)PENLITEIR;T(1)PENLITEIR ;;; 152.4 1.48E-05 476307000 116155 147138 134116 49768.3 154712 125316 144204 129383 111109 133463 TRUE FALSE FALSE 108013.1343 135478.249 186049.307 115863.1176 135306.5783 109855.786 108122.634 99925.31531 120740.0176 100042.9961 1.079667128 1.354200237 1.859693474 1.158133223 1.352484268 1.098085726 1.080761654 0.998823698 1.206881264 1 16.61026064 -6.126323415 1.63674389 1.067272155 1.404649557 0.330937786 0.200362199 0.443088897 2.373512289 0.084096051 0.084656899 7.48E-07 6.126323415 0.337377402 T(ph)PESFLGPNAALVDLDSLVSRPGPTPPGAK ddPTM_HeLa_A485_30min_R1 1 TPESFLGPNAALVDLDSLVSRPGPTPPGAK 30 1 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 T(0.999)PES(0.001)FLGPNAALVDLDSLVSRPGPTPPGAK 139.73 5.01E-07 89045000 32078 29381 27991 28316 30799 31791 38847 36806 25666 43825 TRUE FALSE FALSE 39213.64043 32816.85237 38346.0357 29862.83138 27732.54342 33455.5276 30547.0211 27779.27079 30816.93078 32900.23404 1.191895486 0.997465621 1.165524709 0.907678387 0.842928454 1.016878104 0.92847428 0.844348729 0.936678163 1 15.00581023 -5.270518671 24.95426475 0.919316156 1.106212307 0.60471201 0.071196613 410.7563699 1128955.994 0.019366032 0.029203547 5.36E-06 5.270518671 0.186896151 T(ph)PESKPTILVK ddPTM_HeLa_A485_30min_R1 1 TPESKPTILVK 11 1 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein 1 0 T(0.998)PES(0.001)KPTILVK 91.441 0.0030757 317520000 586970 371860 293900 604120 521680 435850 577080 460980 450850 814600 TRUE FALSE FALSE 717539.4515 415345.7922 402625.8402 637121.5459 469739.7075 458670.432 453782.1437 347923.9322 541331.4596 611535.2116 1.173341188 0.679185408 0.658385376 1.041839511 0.768131906 0.750031108 0.742037638 0.56893524 0.885200802 1 19.22207604 -5.958757218 24.9986748 0.75931886 0.86286231 0.055651642 0.177308345 431.7502367 261696.9271 0.054189797 0.061445391 1.10E-06 5.958757218 0.103543451 T(ph)PESKPTILVK ddPTM_HeLa_A486_30min_R1 1 TPESKPTILVK 11 1 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein 1 0 T(0.999)PES(0.001)KPTILVK 113.35 0.00051618 226920000 702730 790420 316510 282500 556690 778180 771750 754420 555420 879600 TRUE FALSE FALSE 653472.2559 727784.2405 439071.1484 657674.2768 486864.7493 682176.0636 578649.9873 582655.0349 603564.2528 659342.4348 0.991096919 1.103803126 0.665922782 0.997469967 0.738409548 1.03463091 0.877616784 0.88369109 0.915403318 1 19.33066841 -4.667348081 22.06528474 0.887948973 1.047460056 0.242818175 0.111787827 9.023791888 2108.73072 0.026087293 0.069020461 2.15E-05 4.667348081 0.159511083 T(ph)PEVSFLPEEATEEAGVR ddPTM_HeLa_A486_30min_R1 1 TPEVSFLPEEATEEAGVR 18 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 T(1)PEVSFLPEEATEEAGVR 101.6 0.0013157 9625500 3382.2 5722.7 5333.2 3698.9 3382.8 5606.3 4627 6462.5 0 2210.1 TRUE FALSE FALSE 3145.125246 5269.21241 7398.357868 8611.226132 2958.497681 4914.651707 3469.275661 4991.129825 0 1656.676575 1.898454589 3.180592091 4.46578287 5.197892132 1.785802809 2.966572825 2.094117653 3.012736404 0 1 10.69407626 -7.283453966 0.830228124 0.695817104 3.473810243 0.42574919 1.113393174 0.619173838 0.788457468 1.052025093 0.458611983 5.21E-08 7.283453966 2.777993139 T(ph)PGTPGT(ph)PSYPR ddPTM_HeLa_A486_30min_R1 1 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(0.817)PGT(0.215)PGT(0.946)PS(0.02)Y(0.002)PR 63.181 0.033568 403530000 421770 474170 405160 143100 518780 418070 480920 507180 422890 455580 TRUE FALSE FALSE 392206.101 436595.0423 562048.8026 333144.0319 453709.775 366492.774 360588.7293 391706.1857 459546.4457 341499.8027 1.148481194 1.278463527 1.645824677 0.975532136 1.328579904 1.073185903 1.055897329 1.147017312 1.34567119 1 18.38152522 -5.286991265 24.99754186 1.140930507 1.349677333 0.282133791 0.164152591 1016.832893 994770.7179 0.045784269 0.067938554 5.16E-06 5.286991265 0.208746826 T(ph)PHTPGT(ph)PK ddPTM_HeLa_A486_30min_R1 2 TPHTPGTPK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(0.855)PHT(0.145)PGT(1)PK;T(0.84)PHT(0.161)PGT(0.999)PK ; 72.34 0.01936 329170000 662740 612990 323350 338230 568550 635720 854910 800720 460860 1062370 TRUE FALSE FALSE 616285.3484 564414.4399 448559.7796 787416.5332 497237.1575 557291.3299 641002.4757 618413.5356 500807.7159 796345.6371 0.773891787 0.708755613 0.563272728 0.988787401 0.624398671 0.699810866 0.804929977 0.776564229 0.62888235 1 19.60303521 -11.2389752 2.325834466 1.965278211 0.731600011 0.340251831 0.112801842 11416141.78 1712668.663 58132278.65 0.026939525 5.77E-12 11.2389752 -1.2336782 T(ph)PLSEAEFEEIMNR ddPTM_HeLa_A485_30min_R1 2 TPLSEAEFEEIMNR 14 0 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 T(1)PLSEAEFEEIMNR;T(1)PLSEAEFEEIMNR ; 187.97 6.80E-17 118026000 11132.5 12101.9 12334.3 12832.8 12071.9 8794.9 10090.3 10029.9 11662.5 11884.9 TRUE FALSE FALSE 13608.88622 13517.11193 16897.27084 13533.82337 10869.97925 9255.387364 7934.424975 7570.051299 14003.05678 8922.213155 1.52528145 1.514995405 1.89384299 1.51686842 1.218305263 1.037342104 0.889288883 0.848449949 1.569460013 1 13.1231859 -5.811111997 2.667605934 1.052834208 1.640873851 0.606165167 0.208846388 0.182405104 2.651497778 0.069274573 0.084572502 1.54E-06 5.811111997 0.588039643 T(ph)PLSEAEFEEIMNR ddPTM_HeLa_A486_30min_R1 3 TPLSEAEFEEIMNR 14 0 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 T(1)PLSEAEFEEIMNR;T(1)PLSEAEFEEIMNR;T(1)PLSEAEFEEIMNR ;; 210.14 1.46E-21 198673000 13235.5 23447.8 16404.4 7129.6 20461.2 18075.5 22265.9 15569.7 23526.5 23284.3 TRUE FALSE FALSE 12307.7598 21589.71093 22756.62301 16598.06911 17894.7655 15845.52859 16694.73632 12024.81919 25565.79596 17453.75972 0.705163815 1.236966205 1.303823552 0.950973852 1.025267093 0.90785761 0.956512326 0.688952947 1.464772998 1 14.09125022 T(ph)PLTQDPASITDNLLQLPAR ddPTM_HeLa_A485_30min_R1 2 TPLTQDPASITDNLLQLPAR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 T(0.981)PLT(0.019)QDPASITDNLLQLPAR;T(0.674)PLT(0.326)QDPASITDNLLQLPAR ; 83.617 0.0066802 66515000 31098 30955 33907 28505 31648.4 31304 34364 22908.1 26305 43410 TRUE FALSE FALSE 38015.64281 34574.91798 46450.61029 30062.15597 28497.37417 32943.02903 27021.85067 17289.85256 31584.17222 32588.6859 1.166528866 1.060948517 1.425360029 0.922472175 0.874456069 1.010873195 0.829178898 0.530547706 0.969175999 1 14.99208356 -5.433642338 6.754046268 0.854684311 1.201058834 0.508606 0.153636926 0.207547649 13.32494915 0.044458406 0.066008925 3.68E-06 5.433642338 0.346374522 T(ph)PLTQDPASITDNLLQLPAR ddPTM_HeLa_A486_30min_R1 2 TPLTQDPASITDNLLQLPAR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 T(0.999)PLT(0.001)QDPASITDNLLQLPAR;T(0.911)PLT(0.089)QDPASITDNLLQLPAR ; 135.58 1.19E-06 75592000 39054 41161 36936 9491.8 42038 37610 34393 34259 39970 40916 TRUE FALSE FALSE 36316.51628 37899.25245 51238.60838 22097.39009 36765.20205 32970.06059 25787.50763 26458.97357 43434.63178 30670.36728 1.184091339 1.235696075 1.670622589 0.720480126 1.198720632 1.074980951 0.840795527 0.862688514 1.416175795 1 14.90455782 -5.264239074 24.99967524 1.013279603 1.350692599 0.343777931 0.21958884 280.9287423 2508539.352 0.060336439 0.094193919 5.44E-06 5.264239074 0.337412996 T(ph)PNGPNIDKK ddPTM_HeLa_A486_30min_R1 2 TPNGPNIDKK 10 1 Q5TBM3;A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4 Q5TBM3 HSPH1 Heat shock protein 105 kDa 1 0 T(1)PNGPNIDKK;T(1)PNGPNIDKK ; 82.069 0.0054757 2181770000 2505400 2358800 958620 1097250 1733130 2511300 2998900 2737100 1562520 3280300 TRUE FALSE FALSE 2329784.398 2171880.097 1329823.337 2554453.452 1515744.675 2201481.339 2248543.501 2113922.08 1697960.492 2458891.529 0.947493767 0.883276091 0.540822286 1.038863822 0.616434136 0.89531454 0.914454125 0.8597053 0.690538998 1 21.22957666 T(ph)PNRYHLR ddPTM_HeLa_A485_30min_R1 2 TPNRYHLR 8 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 T(0.997)PNRY(0.003)HLR;T(1)PNRYHLR ; 69.65 0.01221 197530000 230030 262450 235130 298410 379240 307950 404430 413450 304300 377210 TRUE FALSE FALSE 281199.3799 293141.2445 322114.3716 314711.3827 341481.534 324073.7858 318020.2266 312050.7392 365370.2188 283178.489 0.993011089 1.035181894 1.137495905 1.111353422 1.205887973 1.144415266 1.12303808 1.10195778 1.290247081 1 18.11135215 -4.668427448 2.318384421 1.145911969 0.991842109 0.340399724 0.070364568 0.336497469 3.381148466 0.018089349 0.074285411 2.15E-05 4.668427448 -0.15406986 T(ph)PPAPSPFDLPELK ddPTM_HeLa_A485_30min_R1 4 TPPAPSPFDLPELK 14 0 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK ;;; 147.68 3.51E-07 311483000 223116 220309 152865 275147 279073 221222 305981 250777 199644 366036 TRUE FALSE FALSE 272747.3845 246072.2211 209416.1247 290177.5839 251287.5122 232804.8418 240605.6597 189273.5475 239710.7196 274789.9616 0.992566769 0.895492032 0.762095251 1.05599776 0.914471223 0.84721014 0.875598433 0.68879353 0.872341617 1 18.06796978 -6.280260854 4.493904437 0.837476258 0.921256781 0.086796117 0.100224127 0.438498437 22.98346582 0.035421566 0.032478253 5.24E-07 6.280260854 0.083780523 T(ph)PPAPSPFDLPELK ddPTM_HeLa_A486_30min_R1 4 TPPAPSPFDLPELK 14 0 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK ;;; 169.04 2.14E-11 338669000 324107 326669 190246 117727 254263 302864 332143 326056 224725 353821 TRUE FALSE FALSE 301388.773 300782.5587 263914.3462 274074.4056 222370.9636 265499.719 249037.3083 251820.1666 244204.3439 265221.9186 1.1363645 1.134078813 0.995069893 1.03337766 0.838433583 1.001047426 0.938977101 0.949469666 0.92075476 1 18.01684048 -4.891633888 1.488066582 0.945177741 1.155480077 0.664541744 0.050524829 0.262821119 1.045049726 0.014714528 0.058157049 1.28E-05 4.891633888 0.210302336 T(ph)PPAS(ph)PHR ddPTM_HeLa_A485_30min_R1 1 TPPASPHR 8 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 2 0 T(1)PPAS(1)PHR 95.401 0.00055244 0 45399 34093 34471 31225 35267 24889 29357 37561 27428 42530 TRUE FALSE FALSE 55497.85093 38079.87978 47223.25736 32930.74268 31755.69365 26192.14955 23084.63713 28349.10586 32932.54802 31928.05371 1.73821591 1.192677766 1.479052177 1.031404638 0.994601611 0.820349082 0.723020493 0.887905856 1.031461182 1 14.96253699 -5.097881917 0.941896934 0.870558643 1.623392224 0.746775601 0.147088077 0.387907529 0.578513777 0.057079375 0.230343909 7.98E-06 5.097881917 0.752833582 T(ph)PPAS(ph)PHR ddPTM_HeLa_A486_30min_R1 1 TPPASPHR 8 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 2 0 T(1)PPAS(1)PHR 70.089 0.026941 261660000 35814 35892 33998 10794 43857 37241 25641 26935 40627 35724 TRUE FALSE FALSE 33303.62354 33047.7872 47162.9361 25128.9775 38356.04611 32646.58406 19225.3506 20802.48849 44148.58107 26778.47788 1.243671268 1.234117464 1.761225426 0.938402011 1.432346016 1.219135166 0.717940381 0.776836106 1.648659094 1 14.70878634 -6.535690375 24.42536907 1.010301229 1.320725667 0.164427049 0.302274145 300.9209109 573698.8781 0.113490393 0.087968518 2.91E-07 6.535690375 0.310424438 T(ph)PPASLYHGYLPENGVLRPEPTK ddPTM_HeLa_A485_30min_R1 2 TPPASLYHGYLPENGVLRPEPTK 23 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 T(0.902)PPAS(0.072)LY(0.026)HGYLPENGVLRPEPTK;T(0.442)PPAS(0.385)LY(0.173)HGYLPENGVLRPEPTK ; 79.9 0.0052715 538620000 488680 447220 503770 392630 563510 354530 464290 351100 548150 662570 TRUE FALSE FALSE 597385.1801 499518.4887 690135.4866 414078.3827 507404.9658 373092.6426 365090.6486 264992.1745 658158.6771 497403.4927 1.201007208 1.004252073 1.387476157 0.832479845 1.020107364 0.750080464 0.733992933 0.532750932 1.323188692 1 18.92405711 -5.284501904 24.52071712 0.858947152 1.178245849 0.298150075 0.216916575 708.0410059 752807.296 0.059808423 0.088783155 5.19E-06 5.284501904 0.319298697 T(ph)PPASPHR ddPTM_HeLa_A485_30min_R1 2 TPPASPHR 8 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 T(1)PPASPHR;T(1)PPASPHR ; 133.75 0.00064212 294740000 99298 129753 135373 82287 136023 109471 118369 107963 119314 128846 TRUE FALSE FALSE 121386.4975 144926.4846 185453.106 86782.13045 122480.0725 115202.7323 93078.49616 81484.90497 143259.2254 96727.06343 1.25493831 1.498303365 1.9172825 0.897185621 1.266244091 1.191008268 0.962279768 0.842420953 1.481066625 1 16.56163198 -5.275150093 24.97828874 1.090940377 1.550987616 0.45636906 0.232736526 679.0734371 1237139.868 0.065191024 0.097283354 5.31E-06 5.275150093 0.460047239 T(ph)PPASPHR ddPTM_HeLa_A486_30min_R1 2 TPPASPHR 8 0 Q5T5P2;Q5T5P2-9;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P2-3;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P0;Q5T5P1 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 T(1)PPASPHR;T(1)PPASPHR ; 132.32 0.00066501 316250000 144425 174088 147849 17060.2 155550 126810 128907 127087 149812 126235 TRUE FALSE FALSE 134301.5533 160292.6329 205100.0923 39717.00777 136039.4686 111165.4715 96653.10516 98152.06439 162797.8248 94624.93435 1.419304058 1.693978801 2.167505782 0.419730889 1.437670414 1.174801042 1.021433788 1.037274848 1.720453767 1 16.52993277 -5.2435415 24.99228552 1.129386374 1.753634414 0.406001664 0.356872224 840.3248329 1173413.315 0.094206425 0.162740819 5.71E-06 5.2435415 0.62424804 T(ph)PPEDCEGPFRPAEILK ddPTM_HeLa_A485_30min_R1 2 TPPEDCEGPFRPAEILK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 T(1)PPEDCEGPFRPAEILK;T(1)PPEDCEGPFRPAEILK ; 144.88 8.99E-08 600080000 763350 676120 709790 1048470 874130 661020 857790 627050 763710 1350340 TRUE FALSE FALSE 933154.574 755186.3525 972370.8578 1105745.261 787098.5479 695629.9851 674516.159 473265.0043 916979.5918 1013725.089 0.92052035 0.744961687 0.959205674 1.090774287 0.776441815 0.686211669 0.665383708 0.466857346 0.904564365 1 19.95123503 -5.986360516 24.07450423 0.709108079 0.919860674 0.224674728 0.156618114 195.68646 345394.7879 0.048097424 0.054505463 1.03E-06 5.986360516 0.210752596 T(ph)PPEDCEGPFRPAEILK ddPTM_HeLa_A486_30min_R1 2 TPPEDCEGPFRPAEILK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 T(1)PPEDCEGPFRPAEILK;T(1)PPEDCEGPFRPAEILK ; 128.32 1.82E-05 642560000 583810 837530 493110 258260 636770 765340 764940 758380 634550 776670 TRUE FALSE FALSE 542887.9338 771161.0726 684055.3979 601242.3317 556900.369 670920.1322 573543.9213 585713.4293 689553.3049 582186.7767 0.932497878 1.324593933 1.174975842 1.032730999 0.956566503 1.152413897 0.985154497 1.006057597 1.184419386 1 19.15112255 -5.261963985 24.99176749 1.043842545 1.162079694 0.134357561 0.111968442 79.46432763 3785640.661 0.029842965 0.04747646 5.47E-06 5.261963985 0.11823715 T(ph)PPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDY(ph)FEPISPDR ddPTM_HeLa_A485_30min_R1 1 TPPGPPPPDDDEDDPVPLPVSGDKEEDAPHREDYFEPISPDR 42 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 2 0 T(1)PPGPPPPDDDEDDPVPLPVS(0.152)GDKEEDAPHREDY(0.644)FEPIS(0.204)PDR 85.53 8.43E-05 85710000 28456 20444 21529 44200 18835 21966 28304 19896 21653 46930 TRUE FALSE FALSE 34785.93903 22834.74796 29493.473 46614.53408 16959.72127 23116.10579 22256.61918 15016.4748 25998.55849 35231.21468 0.987361331 0.648139673 0.837140396 1.323103234 0.481383382 0.656125711 0.631730111 0.426226428 0.73794102 1 15.1045666 -5.809611916 24.99999992 0.625715117 0.919470956 0.29962726 0.214988556 142.7506279 74082.13903 0.065735332 0.074537028 1.55E-06 5.809611916 0.293755839 T(ph)PPHFQTHLAK ddPTM_HeLa_A486_30min_R1 1 TPPHFQTHLAK 11 0 C9JKA9;Q9NS87-4;Q9NS87-2;Q9NS87;Q9NS87-3 C9JKA9 KIF15 Kinesin-like protein KIF15 1 0 T(1)PPHFQTHLAK 121.13 0.00026576 107960000 62106 65438 41557 15842 49446 59087 54576 52953 54278 66894 TRUE FALSE FALSE 57752.69012 60252.45456 57648.98334 36880.97661 43244.02161 51797.44669 40920.50755 40896.75786 58982.86074 50143.30699 1.151752718 1.201605123 1.14968451 0.735511454 0.862408648 1.032988245 0.816071177 0.81559754 1.176285815 1 15.61376953 -5.135518697 7.480511613 0.910486796 1.175953504 0.468790131 0.120782472 0.219115544 12.3307692 0.03245296 0.056593344 7.32E-06 5.135518697 0.265466709 T(ph)PPKS(ph)PATPK ddPTM_HeLa_A485_30min_R1 2 TPPKSPATPK 10 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(1)PPKS(0.981)PAT(0.019)PK;T(1)PPKS(0.947)PAT(0.053)PK ; 80.469 0.0063672 1547120000 567683 362719 238795 1034577 462678 437566 786225 588167 365082 1202689 TRUE FALSE FALSE 693962.1249 405135.8318 327135.2076 1091093.322 416612.1538 460476.2792 618241.6059 443918.121 438350.6087 902880.7662 0.768608825 0.448714655 0.362323819 1.208457819 0.461425439 0.510007851 0.684743356 0.491668599 0.485502211 1 19.78417595 -10.29697371 5.467412732 1.000057189 0.600932331 0.209345749 0.231802344 0.000159907 2.06E-05 0.222104039 0.053860451 5.05E-11 10.29697371 -0.399124858 T(ph)PPKS(ph)PATPK ddPTM_HeLa_A486_30min_R1 3 TPPKSPATPK 10 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(1)PPKS(0.539)PAT(0.462)PK;T(1)PPKS(0.626)PAT(0.375)PK;T(1)PPKS(0.983)PAT(0.017)PK ;; 68.034 0.013218 2032340000 2803860 2655690 829720 1504260 1603070 2961790 3606400 3075330 2013850 5306000 TRUE FALSE FALSE 2607323.893 2445243.453 1151009.805 3501993.301 1401998.013 2596394.463 2704040.575 2375144.493 2188412.139 3977343.064 0.655544129 0.614793196 0.289391633 0.880485602 0.352496124 0.652796206 0.679861036 0.597168626 0.550219608 1 21.92337358 -13.99999988 0.374712064 6.645497903 0.574737852 0.380473875 0.158190151 576.7614909 4.405248288 2640.30767 0.104013239 1.00E-14 13.99999988 -6.070760052 T(ph)PPKS(ph)PSSAK ddPTM_HeLa_A485_30min_R1 2 TPPKSPSSAK 10 1 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 2 0 T(1)PPKS(0.404)PS(0.268)S(0.328)AK;T(0.999)PPKS(0.842)PS(0.101)S(0.057)AK ; 70.622 0.011793 567220000 1506090 1037450 664820 2539000 1405110 1324290 2206300 1870910 1170100 3237400 TRUE FALSE FALSE 1841114.525 1158770.753 910764.5835 2677699.141 1265212.315 1393627.777 1734905.981 1412066.389 1404928.337 2430375.76 0.757543156 0.476786665 0.374742292 1.101763433 0.520583004 0.573420703 0.713842695 0.581007436 0.57807042 1 21.21274796 -11.0803723 2.40243191 1.579360956 0.62868899 0.256801224 0.188359891 23325375.73 6608913.175 74042950.21 0.04613934 8.31E-12 11.0803723 -0.950671967 T(ph)PPKS(ph)PSSAK ddPTM_HeLa_A486_30min_R1 2 TPPKSPSSAK 10 1 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 2 0 T(1)PPKS(0.833)PS(0.077)S(0.09)AK;T(0.999)PPKS(0.398)PS(0.274)S(0.329)AK ; 61.212 0.02397 629930000 1902890 1669720 630530 1103320 1323540 2289200 2626200 2267770 1307180 3195100 TRUE FALSE FALSE 1769507.238 1537405.306 874688.1022 2568584.719 1157529.272 2006781.779 1969096.983 1751448.276 1420487.415 2395026.163 0.738825849 0.641915871 0.365210249 1.072466246 0.483305481 0.837895556 0.822160949 0.731285655 0.593098913 1 21.19160999 -5.245339792 24.99965368 0.770636941 0.587977227 0.20659913 0.184879505 1456.981414 2262417.036 0.048051185 0.082883701 5.68E-06 5.245339792 -0.182659715 T(ph)PPKSPATPK ddPTM_HeLa_A485_30min_R1 3 TPPKSPATPK 10 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 T(0.998)PPKS(0.002)PATPK;T(0.999)PPKS(0.001)PATPK;T(1)PPKSPATPK ;; 77.078 0.011262 1900230000 2896510 2029090 1441600 4088830 2204330 2436810 3217590 2581610 2387180 5076110 TRUE FALSE FALSE 3540828.657 2266374.425 1974907.83 4312192.429 1984859.165 2564397.604 2530125.611 1948466.1 2866265.129 3810729.196 0.929173519 0.594735104 0.518249324 1.131592461 0.520860723 0.672941443 0.663947891 0.511310565 0.752156604 1 21.86163566 -8.024957128 23.33283122 1.000000011 0.687319602 0.192793317 0.18774159 1596.133822 1492252.147 0.176259596 0.045510032 9.44E-09 8.024957128 -0.312680409 T(ph)PPKSPATPK ddPTM_HeLa_A486_30min_R1 2 TPPKSPATPK 10 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 T(1)PPKSPATPK;T(0.999)PPKS(0.001)PATPK ; 107.14 0.0010499 2059980000 2987100 2977310 1132350 1054370 1716620 3022350 3102930 2779480 2244940 4061000 TRUE FALSE FALSE 2777719.715 2741377.112 1570826.245 2454626.645 1501305.513 2649483.186 2326544.095 2146653.08 2439533.207 3044099.167 0.912493175 0.90055447 0.516023348 0.806355677 0.493185481 0.87036691 0.764279994 0.705185003 0.801397416 1 21.53758393 -8.10886011 4.799640749 0.999984742 0.74219862 0.233675666 0.13772073 1.10416669 46.49212171 0.131559544 0.034321603 7.78E-09 8.10886011 -0.257786122 T(ph)PPKSYSTAR ddPTM_HeLa_A485_30min_R1 1 TPPKSYSTAR 10 1 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 T(0.994)PPKS(0.006)YSTAR 80.379 0.0087746 2286600000 372960 438270 334420 417060 424910 457750 486730 500410 381130 557890 TRUE FALSE FALSE 455923.6653 489521.8641 458135.8744 439842.9317 382604.4685 481717.0822 382736.1593 377683.6629 457619.2951 418818.2902 1.088595403 1.168816825 1.093877429 1.050199913 0.913533333 1.150181579 0.913847767 0.901784071 1.092644008 1 18.67596492 -5.337957836 2.707649341 0.99359875 1.126612364 0.327564412 0.077540843 0.310500712 4.447416754 0.022787537 0.038285264 4.59E-06 5.337957836 0.133013614 T(ph)PPKSYSTAR ddPTM_HeLa_A486_30min_R1 1 TPPKSYSTAR 10 1 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757;Q5T760 SRSF11 Serine/arginine-rich splicing factor 11 1 0 T(0.996)PPKS(0.004)YS(0.001)TAR 71.531 0.015441 2421500000 3807600 4475900 2407600 1284900 3684000 3645800 4096500 4139300 3081100 4997500 TRUE FALSE FALSE 3540706.902 4121213.383 3339887.198 2991312.135 3221918.368 3196018.264 3071512.372 3196871.75 3348172.229 3746093.472 0.945173133 1.100136292 0.891565366 0.798515082 0.860074206 0.853160309 0.819924114 0.853388143 0.893777012 1 21.83695547 -4.900518076 6.436892528 0.858293664 1.020934672 0.484878748 0.062095118 0.142527432 7.848795778 0.0150412 0.031889103 1.26E-05 4.900518076 0.162641008 T(ph)PPPPSPLPFPTQAILPPAPSSYFSHPTIR ddPTM_HeLa_A485_30min_R1 2 TPPPPSPLPFPTQAILPPAPSSYFSHPTIR 30 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 T(0.911)PPPPS(0.089)PLPFPTQAILPPAPSSYFSHPTIR;T(0.992)PPPPS(0.008)PLPFPTQAILPPAPSSYFSHPTIR ; 117.66 7.24E-05 812240000 123996 152032 157984 99429 183488 115843 118362 98933 129461 137758 TRUE FALSE FALSE 151578.4824 169810.8199 216428.8559 104860.5545 165219.2905 121908.3604 93072.99177 74669.52663 155442.6352 103417.4658 1.465695192 1.641993628 2.092768896 1.013954013 1.59759562 1.178798565 0.899973626 0.722020464 1.503059797 1 16.65812033 -5.960654811 1.103552187 1.014601491 1.675463541 0.406709575 0.306358064 0.473384596 1.226739679 0.142740062 0.172920664 1.09E-06 5.960654811 0.66086205 T(ph)PPPPSPLPFPTQAILPPAPSSYFSHPTIR ddPTM_HeLa_A486_30min_R1 2 TPPPPSPLPFPTQAILPPAPSSYFSHPTIR 30 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 T(0.997)PPPPS(0.003)PLPFPTQAILPPAPSSYFSHPTIR;T(0.999)PPPPS(0.001)PLPFPTQAILPPAPSSYFSHPTIR ; 141.44 3.58E-09 957870000 179038 244421 217177 23342.2 243466 152961 187291 170473 201716 102446 TRUE FALSE FALSE 166488.3608 225052.1898 301273.7506 54341.82125 212928.224 134090.227 140428.8108 131660.0193 219200.9053 76792.85479 2.168018902 2.930639711 3.923200296 0.707641634 2.772760886 1.746128951 1.828670274 1.714482678 2.854444022 1 16.22868446 -5.253894184 24.99981137 1.872267832 2.999621554 0.354338529 0.740593793 673.9185297 2232917.37 0.193957674 0.327734408 5.57E-06 5.253894184 1.127353722 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 3 0 T(0.995)PPRDLPT(0.005)IPGVT(0.492)S(0.492)PS(0.013)S(0.006)DEPPMEAS(0.414)QS(0.35)HLRNS(0.232)PEDKR 73.252 0.0011824 590420000 19883 27207 24498 16957 28205 17468 27949 32992 22024 27943 TRUE FALSE FALSE 24305.90475 30388.62198 33560.82965 17883.31797 25396.81117 18382.59747 21977.46783 24900.66027 26444.01478 20977.32435 1.158675165 1.44864147 1.599862265 0.852507101 1.210679243 0.876308015 1.047677361 1.187027471 1.260599986 1 14.35654305 -5.259141765 24.99887221 1.067753735 1.407017811 0.482570512 0.161373936 178.1693847 1938537.25 0.044760758 0.073029002 5.51E-06 5.259141765 0.339264076 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_HeLa_A486_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 3 0 T(0.89)PPRDLPT(0.111)IPGVT(0.494)S(0.494)PS(0.007)S(0.007)DEPPMEAS(0.389)QS(0.347)HLRNS(0.261)PEDKR 54.002 0.023408 133090000 20417 18180 12118 2511.2 17759 20558 20015 22793 14577 27831 TRUE FALSE FALSE 18985.87373 16739.35059 16810.41413 5846.200509 15531.50062 18021.76298 15007.0353 17603.53147 15840.5461 20861.93645 0.910072456 0.802387191 0.805793564 0.280232879 0.744489883 0.863858589 0.719350063 0.843811 0.759303727 1 14.34858546 -8.419337717 0.621855162 1.00307919 0.719128718 0.1817374 0.164877793 2.735125701 1.975284616 0.209735954 0.073423107 3.81E-09 8.419337717 -0.283950472 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 3 0 T(0.998)PPRDLPT(0.002)IPGVT(0.773)S(0.225)PS(0.001)S(0.001)DEPPMEAS(0.133)QS(0.585)HLRNS(0.281)PEDKR 111.04 6.45E-05 479570000 49285 45733 42880 44842 75230 69009 68325 66053 49129 65721 TRUE FALSE FALSE 60248.27822 51081.07653 58743.09639 47291.60491 67739.83705 72622.20453 53726.80559 49853.39818 58988.73966 49337.96421 1.221134256 1.035330041 1.190626677 0.958523637 1.372975925 1.471933545 1.088954651 1.010447005 1.195605466 1 15.59041057 -6.967155946 24.99950821 1.071755155 1.202913174 0.169440563 0.1462303 388.1083827 295411.0947 0.065577409 0.04421194 1.08E-07 6.967155946 0.131158019 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.999)PPRDLPT(0.005)IPGVT(0.529)S(0.461)PS(0.003)S(0.004)DEPPMEASQSHLR;T(0.998)PPRDLPT(0.005)IPGVT(0.59)S(0.403)PS(0.003)S(0.001)DEPPMEASQSHLR ; 133.17 2.43E-06 407510000 45396 52826 56403 26157 58034 45062 41478 40426 47477 43334 TRUE FALSE FALSE 55494.18359 59003.54117 77268.81682 27585.89068 52255.93119 47421.37664 32615.88646 30511.46011 57005.19842 32531.6313 1.705853084 1.813728326 2.375190353 0.84797133 1.60631143 1.457700544 1.002589946 0.937901325 1.752300642 1 14.98955555 -5.262958382 24.99982789 1.242451208 1.949804356 0.516454644 0.325935039 112.0893286 1844783.442 0.089989378 0.142005706 5.46E-06 5.262958382 0.707353148 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEASQSHLR ddPTM_HeLa_A486_30min_R1 5 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.999)PPRDLPT(0.002)IPGVT(0.793)S(0.191)PS(0.012)S(0.003)DEPPMEASQSHLR;T(0.997)PPRDLPT(0.003)IPGVT(0.447)S(0.391)PS(0.086)S(0.076)DEPPMEASQSHLR;T(0.998)PPRDLPT(0.012)IPGVT(0.565)S(0.412)PS(0.011)S(0.002)DEPPMEASQSHLR;T(0.999)PPRDLPT(0.008)IPGVT(0.632)S(0.356)PS(0.004)S(0.001)DEPPMEASQSHLR;T(0.994)PPRDLPT(0.011)IPGVT(0.503)S(0.472)PS(0.01)S(0.01)DEPPMEASQSHLR ;;;; 120.34 3.59E-05 1124480000 178828 202782 169197 16531.7 184231 143755 152330 168225 155068 107395 TRUE FALSE FALSE 166293.0807 186712.8158 234714.6097 38486.63307 161123.0301 126019.9697 114215.4228 129923.8398 168509.4191 80502.59298 2.065686017 2.319339153 2.915615522 0.478079421 2.001463855 1.565415039 1.418779428 1.613908758 2.093217285 1 16.29674763 -5.238366538 24.99913734 1.504673128 2.422126082 0.464485837 0.48020019 738.7288129 800402.5028 0.126021396 0.218096713 5.78E-06 5.238366538 0.917452953 T(ph)PPRDLPTIPGVT(ph)SPSSDEPPMEASQSHLRNS(ph)PEDKR ddPTM_HeLa_A486_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 3 0 T(0.997)PPRDLPT(0.003)IPGVT(0.497)S(0.497)PS(0.003)S(0.003)DEPPMEAS(0.245)QS(0.204)HLRNS(0.551)PEDKR 87.627 9.92E-05 157760000 30927 32565 21654 8236.1 41200 29203 41776 35665 28791 37152 TRUE FALSE FALSE 28759.17701 29984.4308 30039.00871 19174.05703 36032.31183 25600.23077 31323.20294 27544.85806 31286.62706 27848.89738 1.032686379 1.076682871 1.078642659 0.688503274 1.293850573 0.919254735 1.124755588 0.989082537 1.123442219 1 14.76533259 T(ph)PPRDLPTIPGVTS(ph)PSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.999)PPRDLPT(0.001)IPGVT(0.083)S(0.856)PS(0.049)S(0.012)DEPPMEASQSHLR 152.85 2.63E-08 208490000 37481 55227 51125 28137 52393 44297 45725 43125 46321 41300 TRUE FALSE FALSE 45818.51914 61685.31724 70038.26499 29674.05306 47176.56896 46616.32242 35955.48021 32548.52613 55617.19982 31004.67007 1.477794121 1.989549223 2.258958564 0.957083336 1.521595581 1.503525834 1.159679498 1.049794307 1.793832984 1 14.92019792 -5.261414942 25 1.299630411 1.916845491 0.465686367 0.306478844 1.950911902 1994754.127 0.083551861 0.133625727 5.48E-06 5.261414942 0.61721508 T(ph)PPRDLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDK ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEAS(0.488)QS(0.391)HLRNS(0.121)PEDK 117.49 0.00015524 291420000 17996 28490 19351 23680 34553 28771 35214 28882 19715 31003 TRUE FALSE FALSE 21999.14811 31821.65767 26509.74016 24973.57844 31112.782 30277.40507 27690.24123 21798.64421 23671.61966 23274.52267 0.945202977 1.367231377 1.139002528 1.073000671 1.336774225 1.300881891 1.189723271 0.93658824 1.017061445 1 14.50646396 -7.250207414 21.27571563 0.982618649 1.202782463 0.383702772 0.120688394 93.50556622 177121.5947 0.056674973 0.032175744 5.62E-08 7.250207414 0.220163814 T(ph)PPRDLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_HeLa_A485_30min_R1 6 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.898)PPRDLPT(0.101)IPGVTSPSSDEPPMEAS(0.397)QS(0.349)HLRNS(0.254)PEDKR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEAS(0.55)QS(0.334)HLRNS(0.116)PEDKR;T(0.997)PPRDLPT(0.003)IPGVTSPSSDEPPMEAS(0.641)QS(0.277)HLRNS(0.082)PEDKR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEAS(0.565)QS(0.401)HLRNS(0.034)PEDKR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEAS(0.403)QS(0.324)HLRNS(0.273)PEDKR;T(0.5)PPRDLPT(0.5)IPGVTSPS(0.003)S(0.013)DEPPMEAS(0.328)QS(0.328)HLRNS(0.328)PEDKR ;;;;; 242.01 1.26E-50 7499830000 698255 802764 673431 640707 1083239 860097 1178256 1048682 736483 1174632 TRUE FALSE FALSE 853579.4158 896640.2667 922561.1507 675707.2011 975387.9217 905130.349 926511.9801 791491.0952 884288.3827 881817.8599 0.96797701 1.016808921 1.046203749 0.766266178 1.106110418 1.026436853 1.050684072 0.897567549 1.002801625 1 19.75012117 -3.982292768 15.08401896 0.988726422 0.929680157 0.005220611 0.090142002 19728602.78 390109598 0.022131668 25652049.91 0.000104162 3.982292768 -0.059046265 T(ph)PPRDLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_HeLa_A486_30min_R1 5 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.984)PPRDLPT(0.016)IPGVTSPSSDEPPMEAS(0.43)QS(0.364)HLRNS(0.206)PEDKR;T(0.995)PPRDLPT(0.005)IPGVTSPSSDEPPMEAS(0.422)QS(0.362)HLRNS(0.216)PEDKR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEAS(0.485)QS(0.353)HLRNS(0.162)PEDKR;T(0.93)PPRDLPT(0.07)IPGVTSPSSDEPPMEAS(0.415)QS(0.316)HLRNS(0.27)PEDKR;T(0.958)PPRDLPT(0.042)IPGVTSPSSDEPPMEAS(0.441)QS(0.366)HLRNS(0.193)PEDKR ;;;; 208.17 7.36E-29 4645220000 574629 566845 344075 88153.2 594531 537079 731931 708850 478129 664304 TRUE FALSE FALSE 534350.4745 521926.1378 477310.0546 205225.1046 519959.3782 470819.6536 548794.1222 547460.3291 519573.6067 497957.9545 1.07308352 1.048132946 0.958534853 0.4121334 1.044183296 0.945500819 1.102089277 1.099410752 1.043408589 1 18.92566441 -6.382801324 2.328656049 1.064056817 0.887865559 0.13739333 0.179757504 0.623192749 6.627997433 0.07741452 0.065970187 4.14E-07 6.382801324 -0.176191259 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDK ddPTM_HeLa_A485_30min_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.996)PPRDLPT(0.004)IPGVTSPSSDEPPMEAS(0.171)QS(0.547)HLRNS(0.283)PEDK;T(0.616)PPRDLPT(0.384)IPGVTSPSSDEPPMEAS(0.33)QS(0.45)HLRNS(0.219)PEDK ; 125.67 2.78E-06 1358940000 156080 154167 125977 165427 206511 150801 221643 184023 140073 260806 TRUE FALSE FALSE 190799.4575 172195.4896 172581.1346 174463.8581 185950.0397 158696.7072 174287.1624 138891.0707 168184.3663 195791.864 0.974501461 0.879482355 0.881452023 0.891067967 0.949733232 0.810537803 0.890165499 0.709381217 0.858995685 1 17.57896129 -6.267456125 24.87674519 0.837924208 0.910039637 0.128387632 0.073862624 798.3046115 3300646.561 0.024600311 0.022266596 5.40E-07 6.267456125 0.072115429 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.5)PPRDLPT(0.5)IPGVTSPSS(0.001)DEPPMEAS(0.284)QS(0.357)HLRNS(0.357)PEDKR 71.709 0.00046829 221720000 89401 93055 87902 65844 116410 102990 132700 132710 86207 111190 TRUE FALSE FALSE 109287.944 103936.9728 120420.6077 69440.89099 104819.8117 108382.3971 104347.5609 100162.6644 103507.9542 83472.3793 1.309270742 1.24516605 1.442640173 0.831902619 1.255742469 1.298422281 1.2500849 1.199949795 1.240026402 1 16.34901127 -10.6960876 2.332091781 0.955541694 1.227750731 0.18017779 0.147316807 7131345.371 5069054.592 1862834.41 0.037713828 2.01E-11 10.6960876 0.272209038 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A485_30min_R1 12 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.961)PPRDLPT(0.038)IPGVTSPSSDEPPMEASQSHLR;T(0.975)PPRDLPT(0.025)IPGVTSPSSDEPPMEASQSHLR;T(0.998)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;T(0.972)PPRDLPT(0.022)IPGVT(0.003)S(0.001)PS(0.001)S(0.001)DEPPMEASQSHLR;T(0.994)PPRDLPT(0.006)IPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR;T(0.892)PPRDLPT(0.108)IPGVTSPSSDEPPMEASQSHLR;T(0.781)PPRDLPT(0.175)IPGVT(0.032)S(0.009)PS(0.002)S(0.002)DEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ;;;;;;;;;;; 190.77 1.60E-20 31721030000 313058.5 468975.1 553176.6 281925.2 473210.6 375465.9 421132.1 417077 421041.6 400450.5 TRUE FALSE FALSE 382697.2833 523817.6584 757819.6439 297326.0598 426096.0911 395124.7139 331153.7865 314788.2118 505540.7871 300625.5601 1.273003144 1.742425555 2.520809088 0.989024552 1.417364814 1.314341714 1.101549005 1.047110604 1.681629423 1 18.19760815 -5.294057387 24.99975898 1.230559423 1.835114448 0.404491144 0.346686004 635.5381068 487100.6961 0.097329081 0.144374241 5.08E-06 5.294057387 0.604555025 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_A486_30min_R1 19 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 T(0.998)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;T(0.763)PPRDLPT(0.235)IPGVT(0.001)SPSSDEPPMEASQSHLR;T(0.942)PPRDLPT(0.058)IPGVTSPSSDEPPMEASQSHLR;T(0.998)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;T(0.996)PPRDLPT(0.004)IPGVTSPSSDEPPMEASQSHLR;T(0.871)PPRDLPT(0.073)IPGVT(0.053)S(0.004)PSSDEPPMEASQSHLR;T(0.993)PPRDLPT(0.007)IPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR;T(0.703)PPRDLPT(0.296)IPGVTSPSSDEPPMEASQSHLR;T(1)PPRDLPTIPGVTSPSSDEPPMEASQSHLR;T(0.998)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR;T(0.992)PPRDLPT(0.008)IPGVTSPSSDEPPMEASQSHLR;T(0.998)PPRDLPT(0.002)IPGVTSPSSDEPPMEASQSHLR;T(0.989)PPRDLPT(0.01)IPGVTSPSSDEPPMEASQSHLR;T(0.992)PPRDLPT(0.008)IPGVTSPSSDEPPMEASQSHLR;T(0.999)PPRDLPT(0.001)IPGVTSPSSDEPPMEASQSHLR ;;;;;;;;;;;;;;;;;; 201.64 8.96E-29 36435111000 860339.7 986257.1 818358.1 116884.11 993084.1 761139.8 827739.5 780178 921870.2 640485.2 TRUE FALSE FALSE 800034.3298 908102.4955 1135248.273 272112.1151 868522.232 667238.1102 620630.3222 602548.5006 1001778.651 480103.5371 1.666378746 1.891472204 2.364590521 0.566777984 1.809031105 1.389779618 1.292700999 1.255038662 2.086588775 1 18.87298604 -5.23219886 24.99945741 1.372762319 1.965879574 0.320189382 0.419905684 884.6396639 756330.0182 0.109376857 0.189411073 5.86E-06 5.23219886 0.593117256 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDK ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.864)PPRDLPT(0.135)IPGVTSPSSDEPPMEAS(0.046)QS(0.143)HLRNS(0.81)PEDK 91.013 6.85E-05 542400000 101880 118540 95646 115350 154130 92023 149100 133310 109070 179490 TRUE FALSE FALSE 124542.8545 132402.2218 131029.4356 121651.2784 138784.276 96841.18199 117243.567 100615.5135 130959.3486 134746.4463 0.924275615 0.982602699 0.972414777 0.902816228 1.029966132 0.718691919 0.870105077 0.746702538 0.971894638 1 17.0398877 -6.241941485 24.99820278 0.846186865 0.96078111 0.241516331 0.087336009 1014.837627 1301121.582 0.026990535 0.026951803 5.73E-07 6.241941485 0.114594245 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDK ddPTM_HeLa_A486_30min_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.973)PPRDLPT(0.027)IPGVTSPSSDEPPMEAS(0.191)QS(0.116)HLRNS(0.693)PEDK;T(0.981)PPRDLPT(0.019)IPGVTSPSSDEPPMEAS(0.092)QS(0.19)HLRNS(0.718)PEDK ; 148.85 1.28E-09 1809740000 748120 657320 432326 73598 665640 666600 880730 782060 553305 784890 TRUE FALSE FALSE 695680.6513 605231.5693 599734.2053 171339.8634 582149.2244 584361.6695 660362.0386 604002.0102 601265.9229 588348.4352 1.182429679 1.028695809 1.019352087 0.291221754 0.989463368 0.993223802 1.122399583 1.02660596 1.021955506 1 19.16631128 -5.982887619 24.99891847 1.034680606 0.868364575 0.09501164 0.221602621 603.0118249 880915.8131 0.073096222 0.082864644 1.04E-06 5.982887619 -0.166316031 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDKR ddPTM_HeLa_A485_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(1)PPRDLPTIPGVTSPSSDEPPMEAS(0.28)QS(0.213)HLRNS(0.507)PEDKR 150.45 5.38E-10 1165100000 166300 162850 165440 152260 233390 181770 266130 249470 176110 276120 TRUE FALSE FALSE 203292.8613 181893.8909 226643.1405 160577.5783 210152.8721 191287.1961 209269.1514 188287.0913 211453.6616 207288.3656 0.980724898 0.87749204 1.093371255 0.77465794 1.013818945 0.922807199 1.009555702 0.908334102 1.02009421 1 17.66127962 -6.747940198 24.81946805 0.976857189 0.94308896 0.050489966 0.0838194 856.1016787 1574022.773 0.030165304 0.023231171 1.79E-07 6.747940198 -0.033768229 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDKR ddPTM_HeLa_A486_30min_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.99)PPRDLPT(0.01)IPGVTSPSSDEPPMEAS(0.323)QS(0.206)HLRNS(0.471)PEDKR;T(1)PPRDLPTIPGVTSPSSDEPPMEAS(0.321)QS(0.246)HLRNS(0.433)PEDKR ; 166.3 9.51E-15 1581630000 356600 345320 236180 63651 362390 324550 459680 414270 286750 381150 TRUE FALSE FALSE 331604.1815 317955.5856 327635.2211 148182.7447 316935.667 284510.3208 344663.202 319949.7645 311605.7209 285707.5591 1.16064196 1.11287075 1.146750272 0.518651817 1.109300951 0.995809567 1.206349608 1.11985054 1.0906457 1 18.12417968 T(ph)PPRWAEDQNSLLK ddPTM_HeLa_A486_30min_R1 3 TPPRWAEDQNSLLK 14 1 P49792;J3KNE0;A6NKT7;Q7Z3J3 P49792 RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 1 0 T(1)PPRWAEDQNSLLK;T(1)PPRWAEDQNSLLK;T(1)PPRWAEDQNSLLK ;; 100.39 0.00079433 2445570000 1104690 1018230 630340 409920 946030 1022160 1157520 1155890 807360 1345820 TRUE FALSE FALSE 1027256.936 937541.7465 874424.5291 954314.4762 827370.096 896056.2918 867896.253 892719.0799 877342.6149 1008817.912 1.018277851 0.929346848 0.866781327 0.94597297 0.820138189 0.88822401 0.860310114 0.884915969 0.869673907 1 19.94423437 -4.328140921 2.405578953 0.885823966 1.03886335 0.388088878 0.047329119 0.419462348 3.308002158 0.011483123 0.12511436 4.70E-05 4.328140921 0.153039384 T(ph)PPSEEDSAEAER ddPTM_HeLa_A485_30min_R1 1 TPPSEEDSAEAER 13 0 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 T(0.999)PPS(0.001)EEDSAEAER 78.401 0.0071329 0 12190 14045 11991 5886.3 8635.8 6653.4 10748 11006 11455 11228 TRUE FALSE FALSE 14901.62344 15687.44057 16426.96989 6207.853664 7775.98943 7001.761736 8451.601997 8306.761243 13753.91343 8429.066236 1.767885437 1.861112505 1.94884812 0.736481775 0.92252086 0.830668729 1.002673577 0.98549009 1.631724445 1 13.0411571 -5.254142298 24.96438448 1.002917984 1.859465132 0.742029186 0.227861945 278.0435219 951225.0648 0.063671217 0.107453109 5.57E-06 5.254142298 0.856547148 T(ph)PPSEEDSAEAER ddPTM_HeLa_A486_30min_R1 2 TPPSEEDSAEAER 13 0 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 T(1)PPSEEDSAEAER;T(1)PPSEEDSAEAER ; 106.58 0.0019396 459530000 3104.4 10783.2 8767.9 1774.4 5103.2 6053.4 6247.1 7289.4 4382.3 5125.6 TRUE FALSE FALSE 2886.797591 9928.69996 12163.06569 4130.892873 4463.109071 5306.593054 4684.009505 5629.762746 4762.161292 3842.116398 0.7513561 2.584174692 3.165720252 1.075160783 1.161627761 1.381164053 1.219122228 1.465276468 1.239463046 1 11.90768551 -5.301303546 24.99837166 1.243859583 2.208793697 0.359081733 0.578268341 538.2599361 337535.6168 0.163593868 0.242652855 5.00E-06 5.301303546 0.964934113 T(ph)PPTANHPVEPVTSVTQPSELLQQK ddPTM_HeLa_A486_30min_R1 1 TPPTANHPVEPVTSVTQPSELLQQK 25 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 T(0.981)PPT(0.019)ANHPVEPVTSVTQPSELLQQK 165.37 9.66E-14 75008000 59418 64590 40824 17034 59924 57206 62444 62045 47728 65862 TRUE FALSE FALSE 55253.10503 59471.65317 56632.1461 39656.01285 52407.77315 50148.50535 46819.85073 47918.70793 51865.10147 49369.72651 1.119169761 1.204617837 1.14710269 0.803245544 1.061536631 1.015774421 0.94835143 0.970609143 1.050544638 1 15.59133903 -5.038867621 24.67999404 0.980646314 1.165385458 0.575649763 0.070233451 291.1913963 184899.2296 0.018340833 0.031776043 9.14E-06 5.038867621 0.184739144 T(ph)PPVPDSGSANGSFFAPSR ddPTM_HeLa_A486_30min_R1 1 TPPVPDSGSANGSFFAPSR 19 0 Q9NPA3 Q9NPA3 MID1IP1 Mid1-interacting protein 1 1 0 T(1)PPVPDSGSANGSFFAPSR 73.464 0.0018151 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)PPVVIK ddPTM_HeLa_A485_30min_R1 1 TPPVVIK 7 0 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 T(1)PPVVIK 90.657 0.03229 21422000000 7791000 8724500 6990100 8393500 7783500 7253100 8809000 7958200 7619800 10276000 TRUE FALSE FALSE 9524081.071 9744754.382 9576028.872 8852015.652 7008547.41 7632861.101 6926885.187 6006438.972 9149023.967 7714382.316 1.234587642 1.263193083 1.241321532 1.147469141 0.908504028 0.989432567 0.897918317 0.778602709 1.185969737 1 22.87911922 -5.602540256 3.339379229 0.947128759 1.244302094 0.638974042 0.097799048 0.144311481 3.220719161 0.02927069 0.039612534 2.50E-06 5.602540256 0.297173335 T(ph)PPVVIK ddPTM_HeLa_A486_30min_R1 2 TPPVVIK 7 0 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 T(1)PPVVIK;T(1)PPVVIK ; 96.964 0.025366 43784000000 13547700 15112300 9282200 4091200 11899000 13610900 13459700 12814400 11376400 15153700 TRUE FALSE FALSE 12598076.19 13914746.31 12876516.43 9524520.358 10406516.47 11931725.54 10091940.7 9896840.856 12362515.51 11359114.89 1.109071993 1.224985085 1.133584487 0.838491419 0.916137971 1.050409795 0.888444285 0.871268664 1.088334402 1 23.43734709 -5.132556515 6.058185835 0.945739804 1.169413597 0.587719138 0.079000861 0.150750355 6.764886585 0.021209813 0.037329279 7.37E-06 5.132556515 0.223673794 T(ph)PQAPASANLVGPR ddPTM_HeLa_A485_30min_R1 1 TPQAPASANLVGPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(1)PQAPASANLVGPR 78.191 0.02885 189550000 77216 55368 68693 84566 85538 54209 81806 96538 60737 112880 TRUE FALSE FALSE 94392.43281 61842.80596 94105.39925 89185.62645 77021.53638 57047.29942 64327.47981 72861.90413 72926.35879 84741.0934 1.11389208 0.72978532 1.110504898 1.05244838 0.908904208 0.673195225 0.759106087 0.859817843 0.86057845 1 16.37077412 -6.003187228 22.78973819 0.814395338 0.98884601 0.278838214 0.127763318 53.74956877 384342.5995 0.039611632 0.043929189 9.93E-07 6.003187228 0.174450672 T(ph)PQASTYSYETSDLCYTAEKK ddPTM_HeLa_A486_30min_R1 1 TPQASTYSYETSDLCYTAEKK 21 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PQASTYSYETSDLCYTAEKK 125.09 1.47E-06 256840000 90284 99673 51667 48920 84903 105700 123110 112410 76495 130990 TRUE FALSE FALSE 83955.55783 91774.54848 71673.84609 113888.2323 74253.67405 92659.80868 92306.57588 86816.69689 83125.64819 98189.2514 0.85503817 0.934670009 0.729956131 1.159884923 0.756230168 0.943685865 0.940088396 0.884177195 0.846586027 1 16.58327748 -11.70722817 2.093824078 4.115655523 0.897048336 0.072865142 0.112584413 5062654.487 264422.8312 76153890.87 0.026395108 1.96E-12 11.70722817 -3.218607186 T(ph)PQGPVSATVEVSS(ph)PTGFAQSQVLEDVSQAAR ddPTM_HeLa_A485_30min_R1 1 TPQGPVSATVEVSSPTGFAQSQVLEDVSQAAR 32 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 2 0 T(0.992)PQGPVS(0.007)AT(0.001)VEVS(0.024)S(0.801)PT(0.137)GFAQS(0.038)QVLEDVSQAAR 112.65 0.00011692 44093000 18307 20097 18400 18141 24247 20796 28435 26686 16686 27250 TRUE FALSE FALSE 22379.32899 22447.16933 25206.92569 19131.99689 21832.88354 21884.8464 22359.62996 20141.21666 20034.72715 20457.0765 1.093965161 1.09728139 1.232186119 0.935226346 1.067253356 1.069793448 1.093002217 0.984559874 0.979354364 1 14.32031237 -5.985763869 0.38856396 0.985307963 1.143323329 0.276614335 0.068343036 2.481345353 0.708646416 0.073132936 0.159226274 1.03E-06 5.985763869 0.158015366 T(ph)PRT(ph)PQLK ddPTM_HeLa_A485_30min_R1 2 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 T(1)PRT(1)PQLK;T(1)PRT(1)PQLK ; 85.845 0.0037021 687890000 382120 724290 794200 651480 2003720 1181740 1726460 2868900 944950 1260660 TRUE FALSE FALSE 467121.2757 808989.415 1088007.629 687068.7028 1804222.601 1243614.079 1357587.717 2165297.777 1134592.797 946400.6627 0.493576657 0.854806476 1.149626868 0.725980792 1.906404626 1.314046078 1.434474605 2.287929269 1.198850383 1 19.85209156 -5.750501166 24.99995784 1.573078251 0.834028829 0.464466467 0.374767764 186.5189937 426298.6233 0.10810516 0.138181963 1.78E-06 5.750501166 -0.739049422 T(ph)PRT(ph)PQLK ddPTM_HeLa_A486_30min_R1 1 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 T(1)PRT(1)PQLK 61.344 0.0043601 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)PRTPQLK ddPTM_HeLa_A485_30min_R1 2 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.851)PRT(0.149)PQLK;T(0.662)PRT(0.338)PQLK ; 85.958 0.0055152 3681100000 436250 789740 556460 432820 1162610 937370 1346790 2072340 720850 780530 TRUE FALSE FALSE 533292.3075 882093.2232 762317.7102 456463.8606 1046856.466 986449.2438 1059037.314 1564095.366 865517.983 585958.2356 0.910119997 1.505385827 1.300976186 0.779004088 1.786571811 1.683480466 1.807359723 2.669294961 1.477098418 1 19.16043831 -5.837737547 9.100230342 1.823840499 1.16452291 0.311540372 0.433913577 0.344133073 37.62840859 0.132416573 0.150379103 1.45E-06 5.837737547 -0.65931759 T(ph)PRTPQLK ddPTM_HeLa_A486_30min_R1 2 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.621)PRT(0.379)PQLK;T(0.978)PRT(0.022)PQLK ; 106.29 0.0016532 3538000000 1827330 1353650 1354490 936770 3009700 1619290 2695900 2908100 1179810 2001400 TRUE FALSE FALSE 1699243.603 1246381.844 1878984.803 2180847.902 2632195.362 1419518.464 2021357.306 2245989.113 1282076.881 1500236.413 1.132650553 0.83079029 1.252459137 1.45366949 1.75452038 0.946196514 1.347359182 1.497090121 0.854583231 1 20.51675843 -4.874863126 6.791314091 1.300000319 0.984440075 0.138760599 0.270353189 0.341163654 18.79508327 0.0698637 0.147841388 1.33E-05 4.874863126 -0.315560244 T(ph)PRTPRT(ph)PQLK ddPTM_HeLa_A485_30min_R1 1 TPRTPRTPQLK 11 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.689)PRT(0.311)PRT(1)PQLK 103.39 0.0015202 643160000 162760 257420 277460 277800 882030 451850 814160 1338200 367640 585860 TRUE FALSE FALSE 198965.4005 287523.0297 380104.0001 292975.5106 794211.9962 475508.1673 640208.0649 1010004.352 441421.9758 439815.884 0.45238339 0.653734984 0.864234362 0.666132173 1.805782886 1.081152784 1.45562743 2.296425365 1.003651737 1 18.74654018 -5.747384418 24.8030313 1.488056282 0.673387115 0.495068632 0.384653614 174.6644433 308231.7509 0.111633969 0.143372753 1.79E-06 5.747384418 -0.814669167 T(ph)PRTPRT(ph)PQLK ddPTM_HeLa_A486_30min_R1 1 TPRTPRTPQLK 11 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.768)PRT(0.232)PRT(1)PQLK 109.07 0.00098893 399710000 152840 132210 204790 168450 583120 257440 446730 573590 180700 215070 TRUE FALSE FALSE 142126.7053 121733.1981 284090.1725 392160.113 509979.6522 225679.6703 334953.429 442996.0784 196363.2215 161215.0721 0.881596884 0.755098121 1.76218122 2.432527603 3.163349713 1.399867067 2.077680607 2.747857707 1.218020244 1 17.2986271 -4.857464767 3.896687299 2.104100221 0.808955531 0.335899137 0.645711391 0.215674518 6.095739665 0.168185682 0.394661086 1.39E-05 4.857464767 -1.29514469 T(ph)PS(ph)PES(ph)HRSPAEGSER ddPTM_HeLa_A485_30min_R1 1 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 3 0 T(0.999)PS(0.739)PES(0.817)HRS(0.444)PAEGS(0.001)ER 92.932 0.00074214 365090000 121550 195340 202370 141780 242670 164880 184030 207860 178230 147210 TRUE FALSE FALSE 148588.3782 218183.3138 277235.0843 149525.0824 218508.9227 173512.8618 144710.4871 156882.0091 213999.1262 110513.2562 1.344529908 1.974272782 2.508613843 1.353005852 1.977219116 1.57006379 1.309440081 1.419576388 1.936411373 1 16.75385991 -6.433694571 4.819937048 1.449212712 1.84877216 0.210725177 0.37794735 0.380922733 14.9383922 0.136843778 0.118481592 3.68E-07 6.433694571 0.399559448 T(ph)PS(ph)PES(ph)HRSPAEGSER ddPTM_HeLa_A486_30min_R1 2 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 3 0 T(0.999)PS(0.961)PES(0.677)HRS(0.343)PAEGS(0.02)ER;T(1)PS(0.992)PES(0.822)HRS(0.183)PAEGS(0.003)ER ; 120.32 5.04E-05 429360000 253920 340910 332430 87653 391650 292430 295360 309680 304020 293340 TRUE FALSE FALSE 236121.5192 313895.05 461155.7988 204060.6137 342525.605 256352.9598 221457.804 239172.6243 330372.6984 219885.7547 1.073837273 1.427536998 2.097251818 0.928030167 1.5577435 1.165846147 1.007149391 1.087713138 1.502474314 1 17.74639462 -6.059541966 1.430567185 1.150717926 1.460618514 0.124556336 0.322130027 0.844785604 3.527470705 0.136989616 0.146063092 8.72E-07 6.059541966 0.309900588 T(ph)PS(ph)PESHR ddPTM_HeLa_A485_30min_R1 4 TPSPESHR 8 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 T(1)PS(0.993)PES(0.007)HR;T(1)PS(0.897)PES(0.103)HR;T(0.995)PS(0.936)PES(0.068)HR;T(1)PS(1)PESHR ;;; 132.01 0.001372 3923980000 1641800 1780540 1709990 1981520 1841720 1517660 1764210 1407135 1875880 2358810 TRUE FALSE FALSE 2007012.746 1988758.664 2342586.46 2089765.42 1658351.89 1597122.331 1387272.121 1062032.935 2252351.909 1770802.078 1.133391908 1.123083539 1.322895703 1.180123655 0.936497597 0.901920294 0.783414555 0.599746831 1.271938822 1 20.75597154 -5.803573686 3.777356454 0.882347833 1.197822751 0.386021432 0.167683946 0.21488454 6.389462943 0.052559095 0.062913923 1.57E-06 5.803573686 0.315474917 T(ph)PS(ph)PESHR ddPTM_HeLa_A486_30min_R1 2 TPSPESHR 8 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 T(0.992)PS(0.938)PES(0.07)HR;T(1)PS(1)PESHR ; 103.26 0.0043608 1904620000 582587 615830 562359 178735 556570 622373 577005 503391 622091 562780 TRUE FALSE FALSE 541750.6598 567029.388 780119.4653 416104.1128 486759.8008 545590.9471 432632.2461 388779.8582 676014.3488 421856.2249 1.284206864 1.344129479 1.849254365 0.986364757 1.15385236 1.293310173 1.025544298 0.921593271 1.602475699 1 18.68639186 -5.288237014 24.90912545 1.139321741 1.47769034 0.326777102 0.231284866 817.9918365 760343.7184 0.063988391 0.094940056 5.15E-06 5.288237014 0.338368598 T(ph)PS(ph)PESHRS(ph)PAEGSER ddPTM_HeLa_A485_30min_R1 1 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 3 0 T(1)PS(0.787)PES(0.224)HRS(0.986)PAEGS(0.004)ER 110.26 0.00016181 247410000 147690 194890 190090 172720 188230 185760 205910 200590 163610 198530 TRUE FALSE FALSE 180543.131 217680.6902 260412.2013 182155.2562 169489.1603 195486.1064 161915.6464 151394.988 196445.0263 149040.1247 1.211372651 1.460550913 1.747262369 1.222189371 1.137204901 1.311634077 1.086389633 1.015800197 1.318068049 1 17.18534126 -5.498042941 22.75412059 1.153659429 1.473963572 0.470247338 0.15595662 213.0851034 195224.0023 0.04408183 0.064931982 3.18E-06 5.498042941 0.320304143 T(ph)PS(ph)PESHRS(ph)PAEGSER ddPTM_HeLa_A486_30min_R1 2 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 3 0 T(1)PS(0.972)PES(0.04)HRS(0.85)PAEGS(0.138)ER;T(1)PS(0.953)PES(0.05)HRS(0.977)PAEGS(0.021)ER ; 111.67 0.00014613 738050000 343540 436180 415060 128648 474490 356000 362550 383830 371880 381100 TRUE FALSE FALSE 319459.62 401615.5083 575782.3477 299499.0455 414975.0398 312080.3395 271836.1553 296440.288 404114.8578 285670.0795 1.118281693 1.405871798 2.015550067 1.048408871 1.452637394 1.092450214 0.951573773 1.037701563 1.414620875 1 18.12399041 -5.978125307 1.582249916 1.095490306 1.464579134 0.229875061 0.271596437 0.554418796 2.836120728 0.108281064 0.12244439 1.05E-06 5.978125307 0.369088828 T(ph)PS(ph)PESHRSPAEGS(ph)ER ddPTM_HeLa_A485_30min_R1 1 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 3 0 T(1)PS(0.995)PES(0.017)HRS(0.37)PAEGS(0.618)ER 98.3 0.00050101 505690000 141000 205330 189460 139130 195600 170570 197100 207870 182510 182550 TRUE FALSE FALSE 172364.9636 229341.5574 259549.1381 146730.3196 176125.3772 179500.7814 154987.9748 156889.5566 219138.0829 137043.6446 1.257737738 1.673492836 1.893915905 1.070683139 1.285177271 1.309807412 1.130938799 1.144814537 1.599038639 1 17.0642759 -5.272730322 24.92132066 1.228838225 1.61489324 0.412715128 0.212049618 662.3522655 1461939.746 0.058878851 0.088204456 5.34E-06 5.272730322 0.386055015 T(ph)PS(ph)PESHRSPAEGSER ddPTM_HeLa_A485_30min_R1 1 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 T(0.983)PS(0.541)PES(0.474)HRS(0.001)PAEGSER 77.287 0.0046757 1233200000 217740 637040 581010 75505 724810 434990 477660 655830 434930 165020 TRUE FALSE FALSE 266175.5118 711536.2865 795949.7768 79629.64696 652645.3714 457765.4038 375604.0389 494986.6642 522216.4616 123883.551 2.148594464 5.743589693 6.424983548 0.642778209 5.268216533 3.695126594 3.031912114 3.995580207 4.215381764 1 16.91862512 -10.18138148 0.551764498 8.09E-33 4.001345628 0.221513553 1.622948232 48.1192362 7.669371041 79.10674844 0.703369795 6.59E-11 10.18138148 4.001345628 T(ph)PS(ph)PPPPIPEDIALGK ddPTM_HeLa_A485_30min_R1 5 TPSPPPPIPEDIALGK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK ;;;; 104.41 0.00071266 666410000 446174 354128 289296 575421 430143 342835 460076 361765 394930 730574 TRUE FALSE FALSE 545423.867 395540.1891 396318.629 606854.7922 387316.4526 360785.3105 361777.0041 273041.5665 474188.8285 548455.347 0.994472695 0.721189412 0.722608743 1.106479854 0.706195053 0.657820755 0.659628913 0.497837368 0.864589672 1 19.06501464 -5.948541938 24.99998063 0.697837842 0.868170565 0.152470407 0.166644793 168.9664436 82088.39284 0.050320986 0.057058627 1.13E-06 5.948541938 0.170332723 T(ph)PS(ph)PPPPIPEDIALGK ddPTM_HeLa_A486_30min_R1 2 TPSPPPPIPEDIALGK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK ; 108.71 0.00056295 412560000 506560 583650 316770 212035 447080 603680 608870 541010 540810 690590 TRUE FALSE FALSE 471052.7599 537399.4484 439431.8274 493628.1957 391003.0575 529204.0994 456524.286 417833.8332 587687.8462 517661.769 0.909962427 1.038128524 0.848878271 0.953572825 0.755325351 1.02229705 0.881896855 0.807156059 1.135273805 1 18.98165025 -7.767983484 24.99978925 1.067636911 0.905058364 0.35734795 0.088700245 180.5829865 689831.8121 0.075552709 0.021335282 1.71E-08 7.767983484 -0.162578548 T(ph)PS(ph)PPPPIPEDIALGKK ddPTM_HeLa_A485_30min_R1 5 TPSPPPPIPEDIALGKK 17 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK ;;;; 89.028 0.00074313 958502000 1214470 1059000 726964 1397430 1234310 1321760 1801790 1643150 1064010 1818930 TRUE FALSE FALSE 1484624.662 1182840.838 995898.2351 1473768.062 1111417.762 1390965.31 1416822.847 1240164.886 1277547.047 1365504.226 1.087235494 0.866230082 0.729326366 1.079284878 0.813924806 1.018645921 1.037582177 0.908210215 0.935586301 1 20.38100235 -6.30499854 24.99733151 0.97786663 0.911269034 0.082167047 0.107777319 1300.30082 746200.7757 0.03783737 0.033369646 4.95E-07 6.30499854 -0.066597596 T(ph)PS(ph)PPPPIPEDIALGKK ddPTM_HeLa_A486_30min_R1 6 TPSPPPPIPEDIALGKK 17 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK ;;;;; 99.86 0.00034095 1508400000 2673510 2311410 1034964 998028 1978370 2440650 2931250 2821120 1674280 3506370 TRUE FALSE FALSE 2486110.755 2128245.454 1435729.778 2323459.622 1730224.387 2139547.418 2197820.246 2178812.561 1819407.938 2628352.129 0.945881919 0.809726151 0.546247119 0.883998607 0.658292459 0.81402617 0.836197031 0.828965243 0.692223815 1 21.32572714 -6.495241609 24.24506994 0.825096236 0.762236463 0.061097689 0.125158819 1682.038297 1475593.915 0.043440796 0.038205099 3.20E-07 6.495241609 -0.062859773 T(ph)PSADLFHYDSMNAVNWGMR ddPTM_HeLa_A485_30min_R1 1 TPSADLFHYDSMNAVNWGMR 20 0 A0A0C4DGA7;O94929-2;O94929-3;O94929;A0A0A0MRD5;O94929-4 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 T(0.5)PS(0.5)ADLFHYDSMNAVNWGMR 138.35 1.65E-07 88485000 31991 33400 31137 28734 39253 39881 57808 63292 28506 46485 TRUE FALSE FALSE 39107.28758 37305.83946 42655.87202 30303.66566 35344.83349 41969.10749 45456.84855 47769.53776 34226.89273 34897.14499 1.120644327 1.06902268 1.222331283 0.868370913 1.0128288 1.202651607 1.302595056 1.368866644 0.980793493 1 15.09082139 -6.273499574 22.92998804 1.202261417 1.057739941 0.119269119 0.140297624 426.9824984 811815.4119 0.049352539 0.04392876 5.33E-07 6.273499574 -0.144521476 T(ph)PSADLFHYDSMNAVNWGMR ddPTM_HeLa_A486_30min_R1 1 TPSADLFHYDSMNAVNWGMR 20 0 A0A0C4DGA7;O94929-2;O94929-3;O94929;A0A0A0MRD5;O94929-4 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 T(0.5)PS(0.5)ADLFHYDSMNAVNWGMR 154.79 9.40E-10 81198000 17252 26286 21928 5735.6 32183 29741 36436 38963 29633 32217 TRUE FALSE FALSE 16042.72389 24203.00163 30419.10885 13352.76666 28146.30805 26071.8578 27319.32742 30091.97546 32201.6123 24149.6535 0.664304516 1.002209064 1.259608501 0.552917526 1.165495316 1.079595523 1.131251321 1.246062411 1.333419227 1 14.55971487 -5.913820879 24.99958065 1.166402357 0.901080814 0.33744892 0.196660042 29.82380717 8646.612151 0.06089974 0.069053812 1.22E-06 5.913820879 -0.265321543 T(ph)PSEADRWLEEVSK ddPTM_HeLa_A485_30min_R1 1 TPSEADRWLEEVSK 14 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 T(0.853)PS(0.147)EADRWLEEVSK 73.11 0.010392 29646000 35610 37147 30476 43673 51139 45126 51475 58234 39599 66279 TRUE FALSE FALSE 43531.32165 41491.01851 41750.34061 46058.7454 46047.4216 47488.72758 40476.94574 43952.02019 47546.15608 49756.86507 0.874880714 0.833875254 0.83908704 0.925676192 0.92544861 0.954415587 0.813494694 0.8833358 0.955569769 1 15.60260797 -14 0.101897587 1.360701028 0.813660664 0.420342951 0.044281199 202.6969801 1.396934856 15.44208942 0.771214424 1.00E-14 14 -0.547040364 T(ph)PSEADRWLEEVSK ddPTM_HeLa_A486_30min_R1 1 TPSEADRWLEEVSK 14 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 T(0.711)PS(0.289)EADRWLEEVSK 141.6 1.28E-07 40481000 55223 58713 42522 30661 70767 66107 88747 82897 52044 79588 TRUE FALSE FALSE 51352.15287 54060.36805 58987.65718 71380.35752 61890.74298 57951.39047 66541.56193 64023.16273 56555.21582 59658.64677 0.860766304 0.906161487 0.988752853 1.196479662 1.037414463 0.971382919 1.115371627 1.073158145 0.947980199 1 15.86444363 -4.828824353 3.331741306 1.053114787 0.876932291 0.474428817 0.068607699 0.193064926 4.249466741 0.01857902 0.047505096 1.48E-05 4.828824353 -0.176182496 T(ph)PSELINK ddPTM_HeLa_A485_30min_R1 1 TPSELINK 8 0 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 T(0.999)PS(0.001)ELINK 85.212 0.025143 188570000 213610 204810 140250 253060 219220 212980 264270 208280 155340 290290 TRUE FALSE FALSE 261126.8076 228760.7479 192134.3113 266884.027 197393.6871 224131.3035 207806.5556 157199.0034 186515.3131 217926.0454 1.198235884 1.049717336 0.881649144 1.224654109 0.905782908 1.028474146 0.953564569 0.721341055 0.855865176 1 17.7334791 -6.984109715 3.924723286 0.839248224 1.041049938 0.328992949 0.119621006 0.234877191 8.113863417 0.05430744 0.03330953 1.04E-07 6.984109715 0.201801715 T(ph)PSELINK ddPTM_HeLa_A486_30min_R1 1 TPSELINK 8 0 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 T(1)PSELINK 89.296 0.019751 280460000 354160 360760 191040 140500 314690 323490 373890 381210 279770 416350 TRUE FALSE FALSE 329335.2129 332172.0637 265015.8042 327091.1005 275218.6458 283581.0928 280338.7674 294416.8048 304020.6889 312093.25 1.05524619 1.064335944 0.849155835 1.048055671 0.881847479 0.908642186 0.898253222 0.943361655 0.974134137 1 18.25161763 -4.734109949 24.9991725 0.935375384 1.059791268 0.434363217 0.055562846 187.1980142 171233.7545 0.013423538 0.035496386 1.84E-05 4.734109949 0.124415884 T(ph)PSFLKK ddPTM_HeLa_A486_30min_R1 1 TPSFLKK 7 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 T(0.9)PS(0.1)FLKK 67.414 0.020169 9916600000 5115900 4830000 2199500 2301900 4403400 6226900 8418600 7748100 3521900 6788100 TRUE FALSE FALSE 4757301.829 4447253.209 3051205.305 5358939.532 3851084.512 5458688.388 6312177.237 5984026.77 3827181.128 5088315.577 0.934946301 0.874012852 0.599649385 1.053185372 0.756848598 1.072788884 1.24052393 1.176032948 0.752150897 1 22.27875672 -6.275907562 23.58013835 1.071315471 0.843487514 0.276533456 0.163335358 475.0708255 774263.7315 0.05730215 0.050803525 5.30E-07 6.275907562 -0.227827957 T(ph)PSIQPSLLPHAAPFAK ddPTM_HeLa_A485_30min_R1 2 TPSIQPSLLPHAAPFAK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 T(0.989)PS(0.011)IQPSLLPHAAPFAK;T(0.976)PS(0.023)IQPS(0.001)LLPHAAPFAK ; 123.19 3.76E-06 522930000 261611 293420 267020 171220 366930 258170 291510 291160 241729 279930 TRUE FALSE FALSE 319805.4644 327732.9166 365801.8096 180573.315 330397.1608 271687.382 229226.5071 219752.5535 290241.793 210148.6027 1.521806285 1.559529363 1.740681617 0.859264885 1.572207269 1.292834587 1.090782923 1.045700759 1.381126447 1 17.68105034 -4.541315649 0.301823158 1.058030463 1.983773569 0.338140255 0.227758761 7.618232356 0.647719303 0.264035453 2.576760428 2.88E-05 4.541315649 0.925743106 T(ph)PSIQPSLLPHAAPFAK ddPTM_HeLa_A486_30min_R1 1 TPSIQPSLLPHAAPFAK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 T(0.583)PS(0.417)IQPSLLPHAAPFAK 185.09 1.37E-17 740010000 812430 737400 567050 61672 826470 703950 908050 884720 642930 641760 TRUE FALSE FALSE 755482.8524 678965.7384 786626.9461 143575.5327 722806.4261 617103.8062 680846.2856 683288.5693 698659.6901 481059.1188 1.570457399 1.411397709 1.635198077 0.298457148 1.502531389 1.282802429 1.41530689 1.420383779 1.452336444 1 18.87585468 T(ph)PSPAAEDAREPEAK ddPTM_HeLa_A485_30min_R1 2 TPSPAAEDAREPEAK 15 1 Q92797 Q92797 SYMPK Symplekin 1 0 T(0.737)PS(0.263)PAAEDAREPEAK;T(0.726)PS(0.274)PAAEDAREPEAK ; 153.75 4.07E-08 2470100000 1796350 1546580 1497480 3516800 2302800 1842750 2751300 2232300 1854440 4446200 TRUE FALSE FALSE 2195941.86 1727439.078 2051460.167 3708913.879 2073525.146 1939233.541 2163462.279 1684824.925 2226609.098 3337844.166 0.657892265 0.517531374 0.614606334 1.111170472 0.621216882 0.580983846 0.648161559 0.504764405 0.667080003 1 21.67048517 -9.517134182 4.404123078 0.99995524 0.657901656 0.289651715 0.160599867 17581605.94 51001859.9 35.40412084 0.041862606 3.04E-10 9.517134182 -0.342053584 T(ph)PSPAAEDAREPEAK ddPTM_HeLa_A486_30min_R1 2 TPSPAAEDAREPEAK 15 1 Q92797 Q92797 SYMPK Symplekin 1 0 T(0.763)PS(0.237)PAAEDAREPEAK;T(0.557)PS(0.443)PAAEDAREPEAK ; 135.08 1.27E-05 2688900000 939850 1419300 757150 672840 1268210 1710970 1881700 1801730 1327560 2057340 TRUE FALSE FALSE 873971.3684 1306829.499 1050338.757 1566405.523 1109139.276 1499887.917 1410878.757 1391515.41 1442633.97 1542168.673 0.56671581 0.847397254 0.681079039 1.015716083 0.7192075 0.972583572 0.914866695 0.902310775 0.935457966 1 20.55652914 -3.30027887 0.444013939 0.941493855 2.29E-17 0.539544575 0.097115291 9.001914338 0.719116431 0.060878599 5.329775494 0.000500866 3.30027887 -0.941493855 T(ph)PSPAPK ddPTM_HeLa_A485_30min_R1 2 TPSPAPK 7 0 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 0 T(0.85)PS(0.15)PAPK;T(0.717)PS(0.283)PAPK ; 103.83 0.017825 4888900000 2844200 2678600 1969080 3364700 3011400 2698100 4220400 3797100 2382600 4293100 TRUE FALSE FALSE 3476882.478 2991838.969 2697524.632 3548505.041 2711574.442 2839368.344 3318677.063 2865855.271 2860765.965 3222909.179 1.0788025 0.928303841 0.836984377 1.101025454 0.841343734 0.880995457 1.029714732 0.889213786 0.887634682 1 21.6199321 -4.260971532 23.06937936 0.930153923 1.078802609 0.223431008 0.081522808 19.49635542 960410.2996 0.019506309 0.111521531 5.48E-05 4.260971532 0.148648686 T(ph)PSPARPALR ddPTM_HeLa_A485_30min_R1 1 TPSPARPALR 10 1 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 1 0 T(0.723)PS(0.277)PARPALR 88.338 0.0041618 390280000 91025 129210 115750 91453 129810 120820 137030 141130 102490 120650 TRUE FALSE FALSE 111273.1972 144319.9855 158570.7418 96448.84582 116885.6606 127145.9484 107752.4211 106517.6462 123058.8029 90574.1754 1.228531165 1.593390002 1.750727965 1.064860325 1.290496547 1.403777046 1.189659421 1.176026674 1.358652203 1 16.46681215 -6.951325032 0.136045879 0.817226429 1.735451234 0.287184161 0.185197047 9.117117225 0.966307005 2.480483272 3.289893787 1.12E-07 6.951325032 0.918224805 T(ph)PSPARPALR ddPTM_HeLa_A486_30min_R1 3 TPSPARPALR 10 1 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 1 0 T(0.643)PS(0.357)PARPALR;T(0.555)PS(0.445)PARPALR;T(0.615)PS(0.385)PARPALR ;; 105.17 0.00044435 1387390000 859638 950620 772306 286891 997950 791659 940338 917098 794505 914393 TRUE FALSE FALSE 799381.8154 875289.4091 1071363.566 667896.7467 872777.8055 693992.1616 705055.4865 708294.8055 863373.3331 685423.0411 1.166260495 1.277006107 1.563069086 0.97442996 1.273341795 1.012501944 1.028642815 1.033368829 1.259621112 1 19.38663516 -5.280442844 24.97648609 1.087232282 1.329601359 0.425026405 0.134372933 762.936008 1002734.338 0.037430649 0.055619548 5.24E-06 5.280442844 0.242369076 T(ph)PSPES(ph)HRSPAEGSER ddPTM_HeLa_A485_30min_R1 1 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 T(0.995)PS(0.33)PES(0.666)HRS(0.01)PAEGSER 96.016 0.0006338 1124400000 219480 728690 662470 88815 713310 492200 506190 670470 509460 193910 TRUE FALSE FALSE 268302.5688 813903.9567 907545.2207 93666.73856 642290.3518 517970.8309 398038.3713 506036.1812 611703.949 145571.8056 1.843094325 5.591082374 6.234347487 0.643440109 4.412189221 3.558180986 2.734309501 3.476196362 4.202077086 1 17.15137144 -10.11917656 0.425037433 1.51E-34 3.784104724 0.194284239 1.574018022 32.47466414 3.728144831 44.5608182 0.950501267 7.60E-11 10.11917656 3.784104724 T(ph)PSPES(ph)HRSPAEGSER ddPTM_HeLa_A486_30min_R1 1 TPSPESHRSPAEGSER 16 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 T(0.999)PS(0.012)PES(0.989)HRSPAEGSER 112.58 0.00014288 1073500000 246520 305790 383650 32485 516400 168110 202350 246090 280830 84480 TRUE FALSE FALSE 229240.221 281558.0867 532209.5545 75626.7217 451628.2968 147370.2974 151719.8898 190060.6791 305172.5705 63325.65813 3.620021138 4.446192824 8.404327254 1.19425086 7.131837396 2.327181458 2.395867556 3.001321814 4.819098286 1 15.95050255 -6.30219177 24.99179092 2.814224401 4.913038335 0.236844959 2.014685106 815.8853881 500347.0476 0.682470743 0.601888963 4.99E-07 6.30219177 2.098813935 T(ph)PSPSQPKK ddPTM_HeLa_A485_30min_R1 1 TPSPSQPKK 9 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 T(0.568)PS(0.43)PS(0.002)QPKK 77.062 0.0088101 368650000 417920 426930 262790 476670 554980 505590 692220 741280 405870 751640 TRUE FALSE FALSE 510884.8622 476855.7497 360006.9566 502709.2751 499724.2425 532061.9106 544321.5421 559479.9177 487324.3861 564269.9809 0.905390823 0.845084385 0.638004801 0.890902036 0.885611958 0.942920816 0.964647351 0.991511044 0.863636916 1 19.10602607 -5.77440433 2.153900842 0.949763978 0.800826674 0.420440814 0.07504441 0.30281649 2.88700264 0.025871823 0.032996689 1.68E-06 5.77440433 -0.148937304 T(ph)PSRHS(ph)CS(ph)GSSPPR ddPTM_HeLa_A486_30min_R1 2 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 T(0.992)PS(0.12)RHS(0.781)CS(0.756)GS(0.2)S(0.152)PPR;T(0.556)PS(0.455)RHS(0.974)CS(0.482)GS(0.283)S(0.249)PPR ; 54.834 0.013867 572340000 411100 526180 483600 124957 587600 451930 462600 515970 457960 436850 TRUE FALSE FALSE 382284.0129 484483.5805 670862.8713 290906.211 513897.7288 396175.4715 346852.5871 398494.8945 497656.3415 327459.9166 1.167422312 1.479520259 2.048686991 0.888371969 1.569345446 1.209844172 1.059221509 1.216927246 1.519747353 1 18.3209588 -5.278964227 24.99885426 1.226904674 1.556641 0.24872095 0.282341842 1199.076831 1710457.112 0.078799642 0.117179412 5.26E-06 5.278964227 0.329736326 T(ph)PSRHS(ph)CSGS(ph)SPPR ddPTM_HeLa_A485_30min_R1 1 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 T(0.998)PS(0.002)RHS(1)CS(0.263)GS(0.411)S(0.326)PPR 106.39 0.00028788 584150000 196390 324860 370320 167690 374490 267450 283890 294840 267240 230300 TRUE FALSE FALSE 240076.278 362849.5511 507316.7783 176850.4801 337204.4607 281453.2684 223234.5823 222530.0277 320872.6167 172890.4484 1.388603478 2.098725259 2.934325078 1.022904861 1.950393812 1.627928385 1.29119095 1.2871158 1.855930271 1 17.39949864 -5.281800472 24.99892849 1.469292577 2.13636888 0.332600771 0.456927062 954.698323 1172156.628 0.128188471 0.190374591 5.23E-06 5.281800472 0.667076303 T(ph)PSRHS(ph)CSGSS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 T(0.997)PS(0.003)RHS(0.993)CS(0.016)GS(0.263)S(0.728)PPR 123.61 2.64E-05 737960000 301280 432680 464220 58274 467640 330360 363770 346280 420820 196450 TRUE FALSE FALSE 280161.8278 398392.861 643978.4162 135664.817 408984.2306 289603.5421 272750.8984 267439.6032 457297.0164 147257.6413 1.902528285 2.705413841 4.373140914 0.921275227 2.777337916 1.966645258 1.852202004 1.81613396 3.105421303 1 17.16798297 -5.274114225 24.97706612 1.988723668 2.964866432 0.248531667 0.849351294 1115.213984 2197639.877 0.233117775 0.348329061 5.32E-06 5.274114225 0.976142764 T(ph)PSSEEIS(ph)PTKFPGLYR ddPTM_HeLa_A485_30min_R1 1 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 T(0.788)PS(0.211)S(0.012)EEIS(0.975)PT(0.014)KFPGLYR 96.55 0.00052332 203480000 226340 195640 139280 370280 293020 228310 381920 352020 182280 504460 TRUE FALSE FALSE 276688.5521 218518.3962 190805.4679 390507.4588 263845.8999 240263.9586 300319.672 265686.5431 218861.924 378707.4059 0.730612995 0.577011151 0.503833474 1.031158759 0.696701189 0.634431635 0.793012408 0.701561519 0.577918257 1 18.53072411 -11.3096932 2.418816808 2.70400267 0.696365715 0.30508611 0.138494318 17914450.72 4063930.538 165226651.3 0.03496162 4.90E-12 11.3096932 -2.007636955 T(ph)PSSEEIS(ph)PTKFPGLYR ddPTM_HeLa_A486_30min_R1 1 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 T(0.827)PS(0.173)SEEIS(0.988)PT(0.012)KFPGLYR 162.83 6.54E-12 244100000 292490 266780 143840 197300 265830 345000 464680 448430 229500 513660 TRUE FALSE FALSE 271987.9614 245639.3812 199538.7002 459324.371 232487.1226 302437.4077 348412.1491 346332.2782 249393.2448 385036.1926 0.706395831 0.637964394 0.518233621 1.19293817 0.603805894 0.785477868 0.904881556 0.899479802 0.647713772 1 18.55463454 -1.658176362 0.135419699 0.983670564 3.59E-24 0.151486069 0.182037455 131.7095638 1.415753091 0.907935303 24.21769651 0.021969675 1.658176362 -0.983670564 T(ph)PSSQNLLALLAR ddPTM_HeLa_A486_30min_R1 1 TPSSQNLLALLAR 13 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 T(0.728)PS(0.267)S(0.005)QNLLALLAR 125.67 0.00014452 241670000 169470 173700 134640 48207 142320 138620 197400 171140 141360 198090 TRUE FALSE FALSE 157591.0281 159935.3794 186776.2138 112228.3322 124468.8985 121518.4738 148008.4321 132175.158 153613.1986 148486.9747 1.061312135 1.077100397 1.257862612 0.75581264 0.838247926 0.818378003 0.996777209 0.890146481 1.034523055 1 17.17997686 -5.259823928 24.99999598 0.897716899 1.12659258 0.537433141 0.096415207 113.306889 1753470.255 0.027177015 0.044036914 5.50E-06 5.259823928 0.228875681 T(ph)PT(ph)PPPR ddPTM_HeLa_A486_30min_R1 2 TPTPPPR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(1)PT(1)PPPR;T(1)PT(1)PPPR ; 98.009 0.0072488 18660000000 10125683 9923698 9891089 3469321 10587222 11381110 10046174 9840830 10967076 11363645 TRUE FALSE FALSE 9415924.911 9137308.029 13721183.55 8076754.618 9259273.895 9977024.363 7532515.008 7600287.833 11917710.98 8518114.327 1.105400157 1.072691405 1.610824066 0.94818575 1.087009817 1.171271479 0.88429372 0.892250038 1.399102022 1 23.02210266 T(ph)PTAEER ddPTM_HeLa_A485_30min_R1 1 TPTAEER 7 0 A0A1B0GTY1;A0A1B0GV98;A0A1B0GTC5;A0A1B0GU26;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1;F8WCB8 A0A1B0GTY1 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 T(0.996)PT(0.004)AEER 101.69 0.020177 255120000 143490 238010 160330 163260 146600 177110 153980 211090 194800 233370 TRUE FALSE FALSE 175408.8555 265843.1991 219642.7389 172178.4804 132003.9893 186383.2057 121080.9151 159319.8465 233894.5732 175195.1539 1.001219792 1.51741183 1.253703279 0.982781068 0.753468269 1.06386051 0.69112023 0.909385009 1.335051616 1 17.41860334 -5.268092558 4.650628981 0.940596099 1.287511832 0.305065785 0.202024375 0.205271306 12.4678399 0.056006949 0.091404597 5.39E-06 5.268092558 0.346915733 T(ph)PTAPAVNLAGAR ddPTM_HeLa_A485_30min_R1 3 TPTAPAVNLAGAR 13 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.997)PT(0.003)APAVNLAGAR;T(0.999)PT(0.001)APAVNLAGAR;T(0.994)PT(0.006)APAVNLAGAR ;; 127.27 0.00012993 1440360000 138643 110278 142318 157288 167363 120964 170654 138765 140384 237849 TRUE FALSE FALSE 169483.657 123174.0528 194967.3505 165880.2452 150699.7521 127297.488 134192.3788 104732.6662 168557.7811 178557.6216 0.949181869 0.689828033 1.091901588 0.929001202 0.843983868 0.712921055 0.751535429 0.586548282 0.943996563 1 17.44603019 -5.999623733 4.612846938 0.770292448 0.91012685 0.111549669 0.142797627 0.350223947 19.59655637 0.045399674 0.049082943 1.00E-06 5.999623733 0.139834401 T(ph)PTAPAVNLAGAR ddPTM_HeLa_A486_30min_R1 4 TPTAPAVNLAGAR 13 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.993)PT(0.007)APAVNLAGAR;T(0.999)PT(0.001)APAVNLAGAR;T(1)PTAPAVNLAGAR;T(0.987)PT(0.013)APAVNLAGAR ;;; 177.77 1.75E-12 1510240000 315796 314689 287882 134462 371297 303646 305595 340991 279168 368133 TRUE FALSE FALSE 293660.3312 289751.8976 399357.6201 313034.3313 324725.4681 266185.2438 229131.8987 263354.7931 303366.507 275950.1007 1.064179105 1.050015553 1.447209547 1.134387451 1.176754302 0.964613686 0.83033816 0.954356576 1.099352768 1 18.07404789 -6.263100684 6.44878582 0.957569718 1.181021354 0.422712661 0.119144031 0.144305671 32.75695296 0.042784282 0.040023607 5.46E-07 6.263100684 0.223451636 T(ph)PTCQSSTDCS(ph)PYAR ddPTM_HeLa_A486_30min_R1 2 TPTCQSSTDCSPYAR 15 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 2 0 T(0.999)PT(0.001)CQSSTDCS(1)PYAR;T(0.997)PT(0.003)CQSSTDCS(1)PYAR ; 251 1.10E-41 674590000 260640 360940 341260 123519 437910 324590 331970 351740 270580 280160 TRUE FALSE FALSE 242370.4819 332337.7999 473405.0113 287558.4743 382983.2445 284545.386 248907.5948 271656.4804 294034.0923 210006.1125 1.154111559 1.58251489 2.254243963 1.369286212 1.823676654 1.35493859 1.185239762 1.293564636 1.400121591 1 17.68007179 -6.435179744 5.178654753 1.246791119 1.651771652 0.323360399 0.285660107 0.285820396 12.62528958 0.104023375 0.090368186 3.67E-07 6.435179744 0.404980533 T(ph)PTPEPAEVETR ddPTM_HeLa_A485_30min_R1 1 TPTPEPAEVETR 12 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 0 T(0.74)PT(0.26)PEPAEVETR 103.44 0.0034047 1708100000 824290 1171800 1051500 694890 1215900 965370 1071300 1149500 1011500 1048000 TRUE FALSE FALSE 1007650.467 1308831.817 1440493.607 732850.0811 1094840.727 1015915.28 842408.0033 867583.3227 1214498.772 786752.887 1.280771235 1.663586926 1.830935266 0.931486993 1.391594165 1.291276203 1.070740276 1.102739293 1.54368518 1 19.58555104 -5.258044898 24.99902496 1.202121512 1.598946712 0.422646635 0.214704677 286.7444764 2111751.327 0.058016503 0.095547113 5.52E-06 5.258044898 0.3968252 T(ph)PTPEPFDSETR ddPTM_HeLa_A485_30min_R1 1 TPTPEPFDSETR 12 0 Q9NSY0;H0YCB1;Q9NSY0-2;Q9NSY0-4 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 T(0.745)PT(0.255)PEPFDSETR 93.839 0.001912 0 75657 76396 82918 99926 116250 87629 108370 125030 86623 123910 TRUE FALSE FALSE 92486.63864 85329.84764 113592.8187 105384.7044 104675.7418 92217.11894 85215.8642 94366.19646 104007.4415 93021.51739 0.994249946 0.917313005 1.221145622 1.132906744 1.125285254 0.991352555 0.91608766 1.01445557 1.118100892 1 16.50527685 -6.27827335 23.82241973 1.00315832 1.08022595 0.132567605 0.089256114 981.9737491 1389624.348 0.034190533 0.030241228 5.27E-07 6.27827335 0.077067631 T(ph)PTPEPFDSETR ddPTM_HeLa_A486_30min_R1 1 TPTPEPFDSETR 12 0 Q9NSY0;H0YCB1;Q9NSY0-2;Q9NSY0-4 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 T(0.74)PT(0.26)PEPFDSETR 111.63 0.0010322 0 56282 74923 58017 46988 75566 71172 77833 74343 71868 108070 TRUE FALSE FALSE 52336.92244 68985.82862 80482.73615 109390.4386 66087.80766 62391.52226 58358.36017 57416.7218 78097.57611 81008.56858 0.646066501 0.851586811 0.993508928 1.350356395 0.815812559 0.770184233 0.720397375 0.70877344 0.964065623 1 16.30578689 -5.952356646 24.99999461 0.805853937 0.970988648 0.097016891 0.185736819 242.0613344 127016.142 0.06060058 0.068714582 1.12E-06 5.952356646 0.16513471 T(ph)PVKPSSVEEEDSFFR ddPTM_HeLa_A485_30min_R1 1 TPVKPSSVEEEDSFFR 16 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 T(0.98)PVKPS(0.016)S(0.004)VEEEDSFFR 91.64 0.001149 117840000 116120 98576 83844 135450 112120 96533 122270 94392 101500 153970 TRUE FALSE FALSE 141950.4934 110103.6057 114861.3846 142849.2905 100956.9391 101587.3186 96146.01565 71242.214 121870.119 115588.1126 1.22807173 0.952551289 0.993712779 1.235847591 0.873419739 0.878873409 0.831798474 0.616345508 1.054348204 1 16.81863351 -5.871907442 8.280037282 0.85266459 1.083602675 0.38684163 0.137387477 0.253240646 17.57000968 0.041798701 0.047476603 1.34E-06 5.871907442 0.230938085 T(ph)PVKPSSVEEEDSFFR ddPTM_HeLa_A486_30min_R1 1 TPVKPSSVEEEDSFFR 16 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 T(0.796)PVKPS(0.102)S(0.102)VEEEDSFFR 69.259 0.010934 143960000 108270 122200 67482 40565 99030 114330 112360 113560 89953 119130 TRUE FALSE FALSE 100680.8321 112516.427 93612.83763 94437.37004 86608.73398 100225.127 84246.33958 87704.867 97750.19847 89299.07259 1.127456637 1.25999547 1.048306941 1.057540323 0.969872715 1.122353504 0.943417856 0.982147568 1.094638451 1 16.44635757 -4.86268646 6.185915562 1.024468444 1.192481232 0.550063481 0.060425891 0.135418014 6.994132939 0.015256777 0.032575654 1.37E-05 4.86268646 0.168012789 T(ph)PVQDHR ddPTM_HeLa_A486_30min_R1 1 TPVQDHR 7 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PVQDHR 71.614 0.025085 182080000 37700 36215 64554 18831 53753 76987 50203 38029 73303 45089 TRUE FALSE FALSE 35057.42468 33345.19151 89551.03762 43839.51967 47010.79751 67489.12669 37641.67841 29370.62687 79656.96306 33798.42092 1.037250372 0.986590219 2.649562766 1.297087807 1.390916979 1.996813012 1.113711155 0.868994056 2.35682499 1 15.04466822 T(ph)PVS(ph)PVKFSPGDFWGR ddPTM_HeLa_A485_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 2 0 T(1)PVS(1)PVKFSPGDFWGR;T(1)PVS(1)PVKFSPGDFWGR ; 98.816 0.00050177 188094000 285936 318155 221871 298308 299756 293383 351380 341800 183101 315359 TRUE FALSE FALSE 349541.4767 355360.4597 303950.3157 314603.8107 269911.2401 308744.0802 276304.7925 257973.0141 219847.6912 236745.8051 1.476442113 1.501021146 1.283867799 1.328867519 1.140088797 1.304116371 1.167094777 1.08966245 0.928623386 1 17.85297934 -5.165648372 0.28545501 0.943891299 1.749458255 0.82524317 0.07561498 2.006611695 0.203845462 0.101465206 0.548399707 6.83E-06 5.165648372 0.805566956 T(ph)PVS(ph)PVKFSPGDFWGR ddPTM_HeLa_A486_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 2 0 T(1)PVS(1)PVKFSPGDFWGR;T(1)PVS(1)PVKFSPGDFWGR ; 109.03 0.0001842 121367000 298310 288660 170613 126447 249350 273190 301000 290510 199262 370760 TRUE FALSE FALSE 277400.0095 265785.5303 236678.9228 294375.0063 218074.1979 239486.5954 225686.6163 224367.2148 216534.1906 277919.2828 0.998131568 0.956340732 0.851610296 1.059210442 0.784667389 0.861712771 0.812058142 0.807310715 0.779126185 1 18.08430641 -5.77783193 24.99992736 0.830785356 0.957416466 0.38669189 0.07648744 237.785448 362640.1113 0.02246152 0.025542584 1.67E-06 5.77783193 0.12663111 T(ph)QASSSPAALKPPAGR ddPTM_HeLa_A486_30min_R1 1 TQASSSPAALKPPAGR 16 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 T(0.371)QAS(0.24)S(0.194)S(0.194)PAALKPPAGR 52.784 0.014574 0 228230 215130 139320 57346 201550 208660 227800 216220 154590 222980 TRUE FALSE FALSE 212232.2556 198082.3153 193268.4351 133504.3861 176269.7196 182917.6507 170802.0306 166991.426 167989.9857 167144.3566 1.26975424 1.185097237 1.156296503 0.798737025 1.054595699 1.094369289 1.021883323 0.999085039 1.005059274 1 17.35073512 -5.018349558 23.62462628 1.001775204 1.213243644 0.620376627 0.075497913 237.9108469 306306.7083 0.020850348 0.037079954 9.59E-06 5.018349558 0.21146844 T(ph)QCVERY(ph)LK ddPTM_HeLa_A486_30min_R1 1 TQCVERYLK 9 1 Q9H5U6-2;Q9H5U6-3;Q9H5U6 Q9H5U6-2 ZCCHC4 Zinc finger CCHC domain-containing protein 4 2 0 T(1)QCVERY(1)LK 93.178 0.0014006 0 66047 96393 103180 2285.8 119850 56701 35502 56188 80114 14814 TRUE FALSE FALSE 61417.44637 88754.46762 143134.0593 5321.457918 104817.2954 49705.80711 26619.0241 43395.21898 87058.34602 11104.47798 5.530872004 7.992673569 12.88976029 0.479217297 9.439191618 4.476194848 2.39714322 3.907902656 7.839931441 1 13.43885395 -5.777901211 1.020633713 4.088691506 8.129217602 0.17810281 3.396896855 0.959212427 2.14081807 1.542405897 2.336548741 1.67E-06 5.777901211 4.040526096 T(ph)QSPGTDLLPYLDWDYVR ddPTM_HeLa_A485_30min_R1 2 TQSPGTDLLPYLDWDYVR 18 0 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 0 T(0.499)QS(0.499)PGT(0.003)DLLPYLDWDYVR;T(0.495)QS(0.495)PGT(0.009)DLLPYLDWDYVR ; 74.12 0.025373 44245000 15265.2 17501.3 14782.1 17059.3 22949 14065.3 24387 20161.3 13612.1 22245 TRUE FALSE FALSE 18660.89108 19547.92479 20250.61392 17991.20636 20664.11698 14801.73736 19176.51823 15216.70956 16343.92361 16699.73089 1.117436634 1.170553282 1.212631153 1.077335107 1.237392214 0.886345861 1.148313009 0.911194897 0.978693832 1 14.02753723 -6.255872656 24.99993164 0.989571918 1.161475818 0.570265924 0.077269711 345.6811018 1552441.326 0.024568525 0.023906987 5.55E-07 6.255872656 0.171903899 T(ph)QSPGTDLLPYLDWDYVR ddPTM_HeLa_A486_30min_R1 1 TQSPGTDLLPYLDWDYVR 18 0 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 0 T(0.468)QS(0.468)PGT(0.065)DLLPYLDWDYVR 98.062 0.0020474 15979000 10701 10049 10417 3756.1 12424 10970 13470 11043 10226 11641 TRUE FALSE FALSE 9950.91516 9252.680642 14450.74138 8744.390623 10865.66607 9616.632935 10099.66353 8528.749967 11112.39791 8726.01783 1.140373003 1.060355459 1.65605224 1.002105519 1.245203285 1.102064323 1.157419538 0.97739314 1.273478708 1 13.09110771 T(ph)QSPHGYPK ddPTM_HeLa_A486_30min_R1 2 TQSPHGYPK 9 0 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 T(0.645)QS(0.355)PHGYPK;T(0.619)QS(0.381)PHGYPK ; 74.392 0.015194 631180000 770250 763630 536740 386290 850020 879930 1024370 984020 619620 908910 TRUE FALSE FALSE 716259.4526 703117.1777 744580.1024 899302.642 743402.5655 771373.1831 768061.7913 759980.127 673329.1605 681313.02 1.051292771 1.032003143 1.092860522 1.319955168 1.091132187 1.132186176 1.127325868 1.115463971 0.988281657 1 19.37795825 -7.748179834 7.249201791 0.993415487 1.122960822 0.318570436 0.073724682 0.162294363 44.37585252 0.059311831 0.019945771 1.79E-08 7.748179834 0.129545335 T(ph)QSSLTVSEVLTRR ddPTM_HeLa_A485_30min_R1 1 TQSSLTVSEVLTRR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 T(0.414)QS(0.285)S(0.285)LT(0.017)VSEVLTRR 86.455 0.0014311 97142000 31335 39933 36304 24979 50847 51578 58250 59341 42059 40450 TRUE FALSE FALSE 38305.36265 44602.81698 49734.36034 26343.53952 45784.49415 54278.54433 45804.41164 44787.52671 50499.85551 30366.55943 1.261432423 1.46881365 1.637800306 0.867518086 1.507727415 1.787444655 1.508383317 1.474896319 1.663008799 1 14.89019584 -5.965018135 24.99974119 1.532203761 1.324284641 0.088436777 0.264786152 386.7379191 276380.1503 0.080116211 0.090842861 1.08E-06 5.965018135 -0.20791912 T(ph)QSSSCEDLPSTTQPK ddPTM_HeLa_A486_30min_R1 1 TQSSSCEDLPSTTQPK 16 0 Q5JS72;A0A2U3TZM4;A0A2R8Y6F8;A0A2R8YFN5;O14936-5;O14936-3;O14936-4 Q5JS72 CASK Peripheral plasma membrane protein CASK 1 0 T(0.25)QS(0.25)S(0.25)S(0.25)CEDLPSTTQPK 86.641 0.0022494 0 65105 70457 41192 25167 73845 77680 75501 72248 64554 88716 TRUE FALSE FALSE 60541.4757 64873.73072 57142.64556 58590.04787 64582.67152 68096.63139 56609.85123 55798.70756 70149.5927 66500.93616 0.910385315 0.97553109 0.859275807 0.881040949 0.971154321 1.023995079 0.851263975 0.839066497 1.054866243 1 16.02108703 -7.77835778 24.9983892 1.027433192 0.916580003 0.374222447 0.058614383 318.5625037 470689.9841 0.058854214 0.015357885 1.67E-08 7.77835778 -0.110853189 T(ph)QTPPVSPAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.605)QT(0.378)PPVS(0.018)PAPQPT(0.452)EERLPS(0.094)S(0.452)PVY(0.002)EDAASFK 181.92 1.40E-20 222340000 136580 98252 83278 183080 164200 125790 208690 175030 104420 253610 TRUE FALSE FALSE 166961.7498 109741.7167 114085.9977 193081.1968 147851.6715 132376.1699 164101.6767 132103.6181 125376.1362 190389.6943 0.876947412 0.576405761 0.599223598 1.014136808 0.776573921 0.695290627 0.861925207 0.693859079 0.658523754 1 17.53859586 -11.33479227 2.237070659 2.406618096 0.749296281 0.252001118 0.129037653 20555876.99 2557136.866 146184141 0.034072545 4.63E-12 11.33479227 -1.657321815 T(ph)RGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAK ddPTM_HeLa_A486_30min_R1 1 TRGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAK 33 1 Q9UPQ9-1;Q9UPQ9;H0Y720;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 T(0.486)RGGS(0.374)PY(0.14)NQFDIIPGDTLGGHTGPAGDSWLPAK 124.9 4.16E-06 272090000 62306 68048 41486 10439 81735 64622 87450 79411 63389 72639 TRUE FALSE FALSE 57938.67115 62655.62865 57550.49023 24302.51956 71483.03415 56649.59467 65569.08505 61330.84883 68883.60956 54449.7216 1.064076536 1.150706134 1.056947374 0.446329547 1.31282644 1.040401916 1.204213412 1.126375802 1.265086534 1 15.73263705 T(ph)RNSGIWESPELDR ddPTM_HeLa_A486_30min_R1 1 TRNSGIWESPELDR 14 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 T(0.739)RNS(0.261)GIWESPELDR 125.23 3.45E-05 883430000 256140 278820 212570 68016 271870 272120 268240 276830 228040 290010 TRUE FALSE FALSE 238185.9087 256725.2878 294882.7968 158344.6853 237769.5295 238548.6011 201123.5148 213801.8522 247806.6908 217389.6084 1.095663728 1.180945537 1.356471448 0.728391235 1.093748369 1.097332126 0.925175386 0.983496193 1.139919671 1 17.72992345 -5.237718811 24.99991997 1.000164162 1.208018739 0.389205181 0.123647806 850.1688753 896021.1797 0.033144452 0.057367642 5.78E-06 5.237718811 0.207854577 T(ph)RPASQPTPFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_A485_30min_R1 2 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.332)RPAS(0.332)QPT(0.332)PFALHHAAS(0.003)CEVDPSSGDSISLAR;T(0.318)RPAS(0.318)QPT(0.318)PFALHHAAS(0.046)CEVDPSSGDSISLAR ; 146.89 8.30E-09 760080000 149116 176033 183712 136181 253363 154334 199200 227322 167222 225492 TRUE FALSE FALSE 182286.3398 196618.5281 251674.7137 143620.2232 228137.2901 162414.6896 156639.2927 171570.9231 200781.9215 169280.9943 1.076826968 1.161492044 1.486727525 0.84841316 1.347684015 0.959438419 0.9253212 1.013527383 1.186086615 1 17.36906048 -6.290122526 24.77919859 1.01199808 1.181114706 0.1975003 0.16847088 1092.742773 944010.4794 0.057985308 0.051147314 5.13E-07 6.290122526 0.169116626 T(ph)RPASQPTPFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_A486_30min_R1 2 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.482)RPAS(0.391)QPT(0.128)PFALHHAASCEVDPSSGDSISLAR;T(0.35)RPAS(0.299)QPT(0.35)PFALHHAAS(0.001)CEVDPSSGDSISLAR ; 71.267 0.0016568 591650000 88010 98207 67069 18313.6 101784 76656 95232 95331 76079 83542 TRUE FALSE FALSE 81840.95348 90424.71966 93039.91297 42634.98632 89017.30162 67198.9621 71403.94634 73626.21236 82673.58898 62622.53943 1.306892921 1.443964433 1.485725648 0.680824935 1.421489809 1.073079481 1.140227576 1.175714256 1.32018902 1 15.93439439 T(ph)RRCPQT(ph)KR ddPTM_HeLa_A486_30min_R1 1 TRRCPQTKR 9 3 H3BMV0 H3BMV0 C16orf92 2 0 T(1)RRCPQT(1)KR 49.423 0.021006 65439000 33025 23678 18568 13051 23688 29055 29224 33400 20257 27527 TRUE FALSE FALSE 30710.11804 21801.66905 25758.02687 30383.38756 20716.83016 25470.48951 21911.8461 25795.54912 22012.89307 20634.06003 1.488321639 1.056586489 1.248325673 1.472487117 1.004011335 1.234390589 1.061926062 1.250144135 1.066823157 1 14.3327401 -1.000000029 0.091486524 0.875144958 2.136063627 0.296699523 0.144726778 214.222371 1.40932037 2.48844086 33.89019906 0.099999993 1.000000029 1.260918668 T(ph)RRQSSGSATNVASTPDNR ddPTM_HeLa_A485_30min_R1 2 TRRQSSGSATNVASTPDNR 19 2 Q7Z460-4;F8WA11;Q7Z460-5;Q7Z460 Q7Z460-4;Q7Z460 CLASP1 CLIP-associating protein 1 1 0 T(0.468)RRQS(0.411)S(0.062)GS(0.06)ATNVASTPDNR;T(0.436)RRQS(0.436)S(0.092)GS(0.015)AT(0.02)NVASTPDNR ; 130.3 1.89E-05 93744000 11790 74927 24552 5642.8 33463 62468 82444 214490 22540 5482.6 TRUE FALSE FALSE 14412.64482 83689.06087 33634.80649 5951.051876 30131.30622 65738.72789 64829.16589 161885.9912 27063.57125 4115.88872 3.501709061 20.33316899 8.171942631 1.44587288 7.320729076 15.97194005 15.75095206 39.33196503 6.575389446 1 12.00698826 -1.003665501 2.81E-23 8.611562194 17.25163667 0 11.07565064 0 0.317820757 1201108940 1201108936 0.099159539 1.003665501 8.640074473 T(ph)RS(ph)PS(ph)PTLGESLAPHK ddPTM_HeLa_A485_30min_R1 2 TRSPSPTLGESLAPHK 16 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 3 0 T(1)RS(0.999)PS(0.95)PT(0.051)LGES(0.001)LAPHK;T(0.993)RS(0.995)PS(0.941)PT(0.067)LGES(0.004)LAPHK ; 76.733 0.0038334 210859000 144619 131854 117585 164914 208709 137687 191742 171567 145932 230547 TRUE FALSE FALSE 176788.9976 147273.1783 161084.5846 173922.8342 187929.1991 144896.0784 150774.7553 129489.9242 175219.2138 173075.8758 1.021453723 0.850916846 0.930716565 1.004893567 1.085819721 0.837182408 0.871148302 0.748168534 1.012383806 1 17.40104512 -6.300540612 24.99692302 0.876622871 0.970440572 0.160864752 0.092035114 915.0836084 584998.6885 0.032393948 0.028569125 5.01E-07 6.300540612 0.093817701 T(ph)RS(ph)PS(ph)PTLGESLAPHK ddPTM_HeLa_A486_30min_R1 1 TRSPSPTLGESLAPHK 16 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 3 0 T(1)RS(1)PS(0.949)PT(0.052)LGESLAPHK 86.357 0.00085144 48866000 58434 62968 51873 9595.3 72462 66861 83437 75784 63983 61570 TRUE FALSE FALSE 54338.07835 57978.18635 71959.61481 22338.34332 63373.14028 58612.36961 62560.18009 58529.63755 69529.09796 46152.47125 1.177360104 1.25623146 1.559171435 0.484011857 1.373125611 1.269972507 1.355510949 1.268179926 1.506508667 1 15.49412028 T(ph)RS(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_A485_30min_R1 3 TRSRSPESQVIGENTK 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 0 T(1)RS(1)RS(1)PESQVIGENTK;T(1)RS(0.998)RS(0.994)PES(0.008)QVIGENTK;T(1)RS(0.999)RS(0.999)PES(0.001)QVIGENTK ;; 142.45 1.09E-07 3403100000 2030670 1397340 1285090 3372280 2256020 1731280 2528250 1953400 1850620 4259550 TRUE FALSE FALSE 2482385.536 1560746.758 1760498.268 3556499.117 2031402.727 1821927.144 1988068.734 1474325.587 2222022.459 3197722.576 0.776297967 0.488080726 0.550547531 1.11219752 0.635265468 0.569757726 0.62171395 0.461054876 0.694876559 1 21.60861335 -8.035542341 23.23755403 1.000000005 0.64932006 0.258536635 0.175746021 3368.105142 2202062.271 0.175533697 0.045322606 9.21E-09 8.035542341 -0.350679946 T(ph)RS(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_A486_30min_R1 3 TRSRSPESQVIGENTK 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 0 T(0.998)RS(0.99)RS(0.963)PES(0.05)QVIGENTK;T(1)RS(0.999)RS(0.997)PES(0.004)QVIGENTK;T(1)RS(1)RS(1)PESQVIGENTK ;; 125.58 2.66E-05 3348960000 3082550 3328910 1635020 1479950 2671090 3854750 4077340 3571030 2882390 4207260 TRUE FALSE FALSE 2866479.163 3065115.048 2268143.531 3445398.393 2336056.985 3379190.137 3057146.406 2757984.424 3132237.886 3153734.711 0.908915754 0.971900089 0.719192874 1.092481996 0.740727169 1.071488393 0.969373358 0.874513767 0.993183693 1 21.58862988 -6.290478871 24.99194481 0.973097769 0.893512613 0.154594541 0.109654924 1617.956727 1392439.42 0.036673894 0.032347568 5.12E-07 6.290478871 -0.079585156 T(ph)RS(ph)RS(ph)PESQVIGENTKQP ddPTM_HeLa_A485_30min_R1 3 TRSRSPESQVIGENTKQP 18 3 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 0 T(0.994)RS(0.847)RS(0.889)PES(0.27)QVIGENTKQP;T(1)RS(0.986)RS(0.99)PES(0.024)QVIGENTKQP;T(1)RS(0.914)RS(0.914)PES(0.173)QVIGENTKQP ;; 109.42 6.04E-05 5259200000 4885560 5750210 3889750 5388550 7189140 6846300 8945600 10745700 4584440 7278100 TRUE FALSE FALSE 5972335.967 6422647.039 5328730.391 5682912.842 6473363.979 7204761.682 7034299.481 8110300.226 5504495.057 5463803.614 1.093072956 1.175490097 0.975278536 1.040101959 1.184772447 1.318634818 1.287436368 1.484368912 1.007447457 1 22.3814742 -5.938448811 4.455787704 1.25424501 1.07278307 0.175144148 0.143374845 0.290788534 11.70017331 0.044416685 0.050178634 1.15E-06 5.938448811 -0.18146194 T(ph)RS(ph)RS(ph)PESQVIGENTKQP ddPTM_HeLa_A486_30min_R1 4 TRSRSPESQVIGENTKQP 18 3 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 0 T(0.971)RS(0.859)RS(0.886)PES(0.284)QVIGENTKQP;T(0.983)RS(0.958)RS(0.958)PES(0.102)QVIGENTKQP;T(1)RS(0.939)RS(0.939)PES(0.123)QVIGENTKQP;T(0.837)RS(0.879)RS(0.879)PES(0.404)QVIGENTKQP ;;; 111.58 5.19E-05 6700120000 6370180 5593930 3507009 3101192 6637710 6277170 8101570 8172210 4742073 9290930 TRUE FALSE FALSE 5923663.278 5150646.614 4865016.806 7219731.702 5805146.518 5502756.587 6074471.496 6311576.181 5153119.706 6964420.654 0.850560811 0.739565697 0.698552981 1.036659338 0.833543349 0.790124098 0.872214905 0.906260046 0.739920801 1 22.73157191 -14 0.23083517 1.87931798 0.813863097 0.217563445 0.093612344 264.2021815 2.644794546 109.0716822 0.165276348 1.00E-14 14 -1.065454883 T(ph)RSEPLPPSATAPPPPGPMQPR ddPTM_HeLa_A485_30min_R1 3 TRSEPLPPSATAPPPPGPMQPR 22 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 T(0.604)RS(0.396)EPLPPSATAPPPPGPMQPR;T(0.589)RS(0.411)EPLPPS(0.001)ATAPPPPGPMQPR;T(0.499)RS(0.499)EPLPPS(0.001)ATAPPPPGPMQPR ;; 135.21 1.21E-06 1632060000 436464 639000 592810 712710 935350 704610 1054200 1134080 643100 1030970 TRUE FALSE FALSE 533553.911 713725.4914 812115.0879 751643.5426 842223.2698 741502.2901 828961.558 855945.1018 772164.2711 773968.1526 0.689374504 0.922163902 1.049287474 0.971155648 1.088188535 0.958052715 1.071053835 1.105917729 0.997669308 1 19.56191468 -4.283085141 2.002164622 1.03392848 0.596403857 0.826456316 0.047397946 0.259646523 1.166977289 0.012353839 0.205175402 5.21E-05 4.283085141 -0.437524623 T(ph)RSEPLPPSATAPPPPGPMQPR ddPTM_HeLa_A486_30min_R1 2 TRSEPLPPSATAPPPPGPMQPR 22 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 T(0.443)RS(0.337)EPLPPS(0.218)AT(0.002)APPPPGPMQPR;T(0.496)RS(0.496)EPLPPS(0.008)ATAPPPPGPMQPR ; 102.27 0.00049295 693100000 210024 179411 139766 103180 249790 228570 269270 282360 182899 246840 TRUE FALSE FALSE 195302.4022 165193.819 193887.1383 240208.2544 218459.009 200371.3573 201895.798 218072.7919 198752.8326 185029.6573 1.05551945 0.892796438 1.047870601 1.29821488 1.180670235 1.082914816 1.091153715 1.178582909 1.074167436 1 17.49739701 -5.003335154 24.97682939 1.138327661 0.973201799 0.354778266 0.084122268 131.5012955 984838.501 0.021783189 0.04392893 9.92E-06 5.003335154 -0.165125862 T(ph)RSEREWDRDK ddPTM_HeLa_A486_30min_R1 2 TRSEREWDRDK 11 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.5)RS(0.5)EREWDRDK;T(0.594)RS(0.406)EREWDRDK ; 83.823 0.005917 1309580000 265597 275733 180897 203910 440566 368515 445014 484161 220887 410304 TRUE FALSE FALSE 246980.0218 253882.9129 250945.163 474712.785 385306.1042 323051.3661 333666.7903 373928.1095 240033.663 307561.2078 0.803027221 0.825471179 0.815919422 1.543474187 1.252778616 1.050364474 1.084879308 1.215784371 0.780441931 1 18.23051402 -5.098303998 24.99968832 1.144092765 0.815645375 0.38161083 0.184935182 43.75191436 11119.8102 0.050890467 0.088144918 7.97E-06 5.098303998 -0.328447391 T(ph)RSLVGGLLQSK ddPTM_HeLa_A485_30min_R1 2 TRSLVGGLLQSK 12 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 T(0.683)RS(0.317)LVGGLLQSK;T(0.653)RS(0.347)LVGGLLQSK ; 159.44 6.63E-07 0 140496 135692 109508 178706 248230 176940 278190 323000 151373 244230 TRUE FALSE FALSE 171748.8505 151559.999 150019.5662 188468.2563 223515.3496 186204.3048 218752.4339 243783.7436 181752.1726 183347.9557 0.936737199 0.826624973 0.818223283 1.027926685 1.219077402 1.015578843 1.193099934 1.329623462 0.991296423 1 17.48422465 -5.45662132 3.901675132 1.139021471 0.85939487 0.552060749 0.105675988 0.160156869 4.754228028 0.03043676 0.045218486 3.49E-06 5.45662132 -0.279626601 T(ph)RSPDVISSASTALSQDIPEIASEALSR ddPTM_HeLa_A485_30min_R1 5 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 T(0.429)RS(0.429)PDVIS(0.035)S(0.035)AS(0.035)T(0.035)ALS(0.001)QDIPEIASEALSR;T(0.5)RS(0.5)PDVISSASTALSQDIPEIASEALSR;T(0.496)RS(0.496)PDVIS(0.003)S(0.003)AS(0.001)T(0.001)ALSQDIPEIASEALSR;T(0.496)RS(0.496)PDVIS(0.002)S(0.002)AS(0.002)T(0.002)ALSQDIPEIASEALSR;T(0.605)RS(0.395)PDVISSASTALSQDIPEIASEALSR ;;;; 153.86 2.24E-09 19037522000 112359.1 134774.5 134447.6 121305 169210.1 121437.4 165554.1 171189.4 111689.7 160186.3 TRUE FALSE FALSE 137352.9942 150535.2054 184185.3621 127931.585 152362.9483 127795.6745 130182.1141 129204.9312 134104.7983 120254.8034 1.142183017 1.251802016 1.531625821 1.063837629 1.267000934 1.062707442 1.0825523 1.074426364 1.115172072 1 16.875735 -5.995679197 1.341863074 1.068915623 1.283827614 0.375133297 0.116696602 0.462024139 1.721629039 0.049528618 0.056128282 1.01E-06 5.995679197 0.214911991 T(ph)RSPDVISSASTALSQDIPEIASEALSR ddPTM_HeLa_A486_30min_R1 10 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 T(0.493)RS(0.493)PDVIS(0.004)S(0.004)AS(0.004)T(0.004)ALSQDIPEIASEALSR;T(0.49)RS(0.49)PDVIS(0.008)S(0.008)AS(0.002)T(0.002)ALSQDIPEIASEALSR;T(0.312)RS(0.312)PDVIS(0.094)S(0.094)AS(0.094)T(0.094)ALS(0.001)QDIPEIASEALSR;T(0.5)RS(0.5)PDVISSASTALSQDIPEIASEALSR;T(0.488)RS(0.488)PDVIS(0.006)S(0.006)AS(0.006)T(0.006)ALSQDIPEIASEALSR;T(0.409)RS(0.409)PDVIS(0.045)S(0.045)AS(0.045)T(0.045)ALS(0.001)QDIPEIASEALSR;T(0.499)RS(0.499)PDVISSASTALSQDIPEIASEALSR;T(0.496)RS(0.496)PDVIS(0.002)S(0.002)AS(0.002)T(0.002)ALSQDIPEIASEALSR;T(0.386)RS(0.386)PDVIS(0.057)S(0.057)AS(0.057)T(0.057)ALS(0.001)QDIPEIASEALSR;T(0.578)RS(0.422)PDVISSASTALSQDIPEIASEALSR ;;;;;;;;; 146.59 4.94E-09 19047624000 225146 237673 186870 108355.6 276302 226179 262885 273215.5 209197.4 260614 TRUE FALSE FALSE 209364.4281 218838.9259 259231.0686 252257.3128 241645.6267 198275.3346 197108.3925 211010.2949 227330.7991 195354.5581 1.071715091 1.120214077 1.326977323 1.291279381 1.236959245 1.014951156 1.008977699 1.080140115 1.163683107 1 17.57573539 -6.257178416 24.89106662 1.055773376 1.215550346 0.472453869 0.082214352 343.2094066 2004913.847 0.030355447 0.029369385 5.53E-07 6.257178416 0.15977697 T(ph)RSPS(ph)PTLGESLAPHK ddPTM_HeLa_A486_30min_R1 2 TRSPSPTLGESLAPHK 16 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 T(0.537)RS(0.537)PS(0.898)PT(0.028)LGESLAPHK;T(0.502)RS(0.502)PS(0.927)PT(0.069)LGESLAPHK ; 144.95 1.93E-06 791500000 909070 939740 654220 105662 1023960 900630 1064580 1001760 870400 759390 TRUE FALSE FALSE 845348.8874 865271.5799 907551.5046 245986.4759 895525.3888 789519.4275 798210.824 773681.1163 945846.9728 569233.8012 1.48506446 1.520063598 1.594338746 0.432136102 1.573211898 1.386986201 1.402254789 1.359162289 1.66161421 1 19.11866181 T(ph)RSWDSSSPVDRPEPEAASPTTR ddPTM_HeLa_A486_30min_R1 2 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 T(0.5)RS(0.5)WDS(0.001)SSPVDRPEPEAASPTTR;T(0.583)RS(0.416)WDS(0.001)SSPVDRPEPEAASPTTR ; 150.11 1.32E-09 1755650000 293600 451360 346660 161353 649660 551570 625200 631460 350130 372020 TRUE FALSE FALSE 273020.1562 415592.5898 480896.0359 375637.9383 568173.585 483522.9014 468768.3473 487690.3427 380479.5503 278863.7706 0.979044914 1.490306858 1.724483732 1.347030263 2.037459308 1.73390362 1.68099408 1.748847983 1.364392189 1 18.08920099 -3.18118337 12.24744308 1.557844852 1.45244397 0 0.327577703 0 0 0.073275106 0 0.000658896 3.18118337 -0.105400883 T(ph)RSYDNLTTACDNTVPLASR ddPTM_HeLa_A485_30min_R1 2 TRSYDNLTTACDNTVPLASR 20 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 T(0.621)RS(0.379)YDNLTTACDNTVPLASR;T(0.601)RS(0.398)Y(0.001)DNLTTACDNTVPLASR ; 201.6 3.33E-26 1460270000 231110 306670 293040 236567 476530 279380 381380 407060 280970 351860 TRUE FALSE FALSE 282519.6222 342532.3888 401447.6904 249490.0562 429085 294007.9048 299895.0474 307227.8968 337358.1018 264147.7775 1.069551388 1.296745299 1.519784471 0.94450939 1.624412683 1.113043265 1.135330572 1.163090978 1.277156692 1 18.01098575 T(ph)RSYDNLTTACDNTVPLASR ddPTM_HeLa_A486_30min_R1 2 TRSYDNLTTACDNTVPLASR 20 1 Q13615-3;Q13615-2;Q13615;G5E953 Q13615-3 MTMR3 Myotubularin-related protein 3 1 0 T(0.639)RS(0.361)YDNLTTACDNTVPLASR;T(0.631)RS(0.369)YDNLTTACDNTVPLASR ; 196.06 4.44E-20 1297900000 346060 386920 290100 132386 536100 373600 495190 497090 315630 382210 TRUE FALSE FALSE 321802.9811 356259.0501 402434.4891 308201.2984 468857.3391 327509.0305 371288.2244 383913.4584 342989.0625 286502.1282 1.123213231 1.243477849 1.404647469 1.075738251 1.636488154 1.143129486 1.29593531 1.340002117 1.19716061 1 18.12818633 -8.07057969 4.860725332 1.000050339 1.28575897 0.240153199 0.152617197 0.512534586 30.83954909 0.138415851 0.036100686 8.50E-09 8.07057969 0.285708631 T(ph)RTDSYSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_A485_30min_R1 1 TRTDSYSAGQSVEILDGVELGEPAHKK 27 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.646)RT(0.177)DS(0.111)Y(0.022)S(0.044)AGQSVEILDGVELGEPAHKK 160.79 8.53E-14 461460000 1124100 948960 710290 1135400 1074900 1209800 1672900 1878100 972570 1539600 TRUE FALSE FALSE 1374152.167 1059932.617 973055.8286 1197424.027 967879.1818 1273143.257 1315471.249 1417493.03 1167755.878 1155806.054 1.188912415 0.917050584 0.841885042 1.036007748 0.837406222 1.101519803 1.138141857 1.226410802 1.010338952 1 20.1404679 -6.398099661 8.817000373 1.113556714 0.958961098 0.246682172 0.112229352 0.400006779 26.8599134 0.038794847 0.034173226 4.00E-07 6.398099661 -0.154595616 T(ph)RTPAS(ph)INATPANINLADLTR ddPTM_HeLa_A485_30min_R1 1 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 2 0 T(0.5)RT(0.5)PAS(1)INATPANINLADLTR 114.92 4.74E-05 453340000 166270 201090 165650 180740 281880 222570 277120 315040 172080 239170 TRUE FALSE FALSE 203256.1879 224605.7262 226930.8283 190613.3685 253815.0375 234223.421 217911.0481 237775.946 206614.8776 179549.3206 1.132035405 1.250941666 1.263891323 1.061621219 1.413622934 1.30450742 1.213655654 1.324293209 1.150741629 1 17.45402067 -8.03014034 6.502818669 1.000024057 1.246443305 0.401333667 0.092762314 0.214824641 39.13250961 0.088496373 0.022938753 9.33E-09 8.03014034 0.246419249 T(ph)RTPASINATPANINLADLTR ddPTM_HeLa_A485_30min_R1 2 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 T(0.639)RT(0.361)PASINATPANINLADLTR;T(0.643)RT(0.357)PASINATPANINLADLTR ; 262.26 6.07E-59 1124670000 347850 456430 412740 441430 605580 450860 605220 666550 415770 650830 TRUE FALSE FALSE 425228.0324 509805.5181 565429.7015 465544.2031 545286.3289 474466.3324 475909.8028 503077.5674 499211.2253 488590.0586 0.870316587 1.043421799 1.157268126 0.952831919 1.116040573 0.971092891 0.97404725 1.029651665 1.021738401 1 18.89826498 -8.72026114 14.62799719 1 1.019222996 0.000963428 0.077504204 0 0 0.073273288 0.017771383 1.90E-09 8.72026114 0.019222996 T(ph)RTPASINATPANINLADLTR ddPTM_HeLa_A486_30min_R1 3 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 1 0 T(0.475)RT(0.475)PAS(0.05)INATPANINLADLTR;T(0.658)RT(0.342)PASINATPANINLADLTR;T(0.632)RT(0.368)PASINATPANINLADLTR ;; 278.22 1.34E-72 845519000 423662 419582 292574 179895 425010 385992 488943 457286 318877 488157 TRUE FALSE FALSE 393965.4816 386332.7942 405866.4882 418804.6514 371701.2827 338372.2315 366604.2899 353171.9603 346517.5151 365919.3098 1.076645782 1.055786847 1.109169364 1.144527332 1.015801224 0.924718162 1.001871943 0.965163496 0.946977942 1 18.48116602 -5.961538896 5.826426308 0.967772938 1.093848317 0.802287806 0.030139973 0.080842118 7.155246907 0.009717853 0.010922749 1.09E-06 5.961538896 0.126075378 T(ph)S(ph)RT(ph)KRR ddPTM_HeLa_A486_30min_R1 1 TSRTKRR 7 3 J3KN16 J3KN16 KIAA0368 3 0 T(1)S(1)RT(1)KRR 65.347 0.010521 3839100000 487930 509630 339970 247960 603930 517060 757260 672750 442930 741990 TRUE FALSE FALSE 453728.6267 469245.0628 471615.4887 577263.4112 528179.468 453270.3943 567785.5385 519579.511 481323.529 556190.8745 0.815778625 0.843676307 0.8479382 1.037887239 0.949637062 0.814954749 1.020846556 0.934174822 0.865392712 1 19.08522055 -5.037376597 21.88983213 0.941312331 0.833747327 0.382169357 0.064318255 133.202511 78010.98176 0.017480476 0.03029958 9.18E-06 5.037376597 -0.107565005 T(ph)S(ph)RTKRR ddPTM_HeLa_A485_30min_R1 1 TSRTKRR 7 3 J3KN16 J3KN16 KIAA0368 2 0 T(0.995)S(0.591)RT(0.414)KRR 44.309 0.03745 154070000 67560 120340 99801 86878 113300 115840 108240 117880 105190 157780 TRUE FALSE FALSE 82588.48892 134412.7162 136721.543 91623.92515 102019.4542 121905.2033 85113.63976 88969.74517 126300.6681 118448.3497 0.697253183 1.134779138 1.154271404 0.773534839 0.861299076 1.02918448 0.718571765 0.751126929 1.066293185 1 16.85389857 -5.273429897 24.95738216 0.873342216 1.009369042 0.083095689 0.161461085 1506.612831 3135900.413 0.045233231 0.067650034 5.33E-06 5.273429897 0.136026825 T(ph)S(ph)T(ph)SLGKGSFLDK ddPTM_HeLa_A485_30min_R1 1 TSTSLGKGSFLDK 13 1 Q9BW04-2;Q9BW04 Q9BW04-2 SARG Specifically androgen-regulated gene protein 3 0 T(0.6)S(0.6)T(0.6)S(0.6)LGKGS(0.6)FLDK 72.265 0.0051545 11248000 30110 21111 18706 39861 25525 20425 23790 19471 21227 49274 TRUE FALSE FALSE 36807.86562 23579.74781 25626.12782 42038.5055 22983.64138 21494.42142 18707.07215 14695.70672 25487.06419 36990.89862 0.995051945 0.637447283 0.692768459 1.136455373 0.621332334 0.581073243 0.505720944 0.397278987 0.689009057 1 15.17488273 -4.256675342 23.90002206 0.678683945 0.995052191 0.151643399 0.208979939 527.0635307 2643975.499 0.054639336 0.425715801 5.54E-05 4.256675342 0.316368247 T(ph)S(ph)T(ph)SLGKGSFLDK ddPTM_HeLa_A486_30min_R1 2 TSTSLGKGSFLDK 13 1 Q9BW04-2;Q9BW04 Q9BW04-2 SARG Specifically androgen-regulated gene protein 3 0 T(0.6)S(0.6)T(0.6)S(0.6)LGKGS(0.6)FLDK;T(0.6)S(0.6)T(0.6)S(0.6)LGKGS(0.6)FLDK ; 72.265 0.0051545 25645000 69319 76899 39568 26304 51032 78265 74539 67898 65780 78616 TRUE FALSE FALSE 64460.09606 70805.24318 54889.78927 61237.04133 44631.09071 68609.46004 55888.55381 52439.1076 71481.86336 58930.0419 1.093841002 1.201513539 0.931439848 1.039148104 0.757357186 1.164252694 0.948388157 0.889853561 1.212995292 1 15.84671567 -4.761118788 24.99999932 0.986760861 1.14767729 0.193969011 0.125678853 12.01922115 936868.0771 0.030959923 0.072259666 1.73E-05 4.761118788 0.160916428 T(ph)S(ph)TWLFETHTMDELR ddPTM_HeLa_A485_30min_R1 1 TSTWLFETHTMDELR 15 0 A0A5F9ZH43;A4UGR9-2;A4UGR9-3;A4UGR9;A4UGR9-8 A0A5F9ZH43 XIRP2 Xin actin-binding repeat-containing protein 2 2 0 T(0.417)S(0.446)T(0.447)WLFET(0.367)HT(0.322)MDELR 41.412 0.011622 0 13988 18117 21721 15940 19972 19208 20694 25393 18392 19426 TRUE FALSE FALSE 17099.58234 20235.62555 29756.50179 16810.76184 17983.51755 20213.70118 16272.55785 19165.32694 22083.1057 14583.45571 1.17253295 1.387574108 2.040428715 1.152728281 1.233145142 1.386070735 1.115823175 1.314182819 1.514257398 1 13.832045 T(ph)SDANETEDHLESLICK ddPTM_HeLa_A485_30min_R1 2 TSDANETEDHLESLICK 17 0 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 T(0.5)S(0.5)DANETEDHLESLICK;T(0.5)S(0.5)DANETEDHLESLICK ; 302.61 1.14E-68 311406000 523680 350659 354710 811460 659680 303856 597820 384640 349700 871460 TRUE FALSE FALSE 640170.8093 391665.5197 485931.9897 855788.0051 593999.9429 319765.4303 470090.8733 290306.4369 419881.5824 654221.06 0.978523695 0.598674582 0.742764211 1.308102196 0.907949895 0.488772756 0.718550505 0.443743644 0.641803831 1 19.31941868 -6.241729984 23.40455984 0.62755666 0.903199216 0.234556597 0.220989262 511.9974249 607987.3185 0.074616609 0.07448624 5.73E-07 6.241729984 0.275642556 T(ph)SDANETEDHLESLICK ddPTM_HeLa_A486_30min_R1 2 TSDANETEDHLESLICK 17 0 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 T(0.497)S(0.497)DANET(0.005)EDHLESLICK;T(0.5)S(0.5)DANETEDHLESLICK ; 234.23 4.52E-42 278210000 295600 378850 201069 125789 403410 375230 511660 461200 295800 404270 TRUE FALSE FALSE 274879.9665 348828.5463 278928.3016 292843.149 352810.5562 328937.9377 383637.2562 356194.8279 321440.1822 303038.1606 0.907080369 1.151104354 0.920439528 0.966357334 1.164244646 1.085467048 1.265970119 1.175412454 1.060725096 1 18.20913995 -5.761876769 24.99999791 1.139115396 0.993320604 0.34703866 0.092081013 12.7639815 729571.0492 0.027373484 0.032989742 1.73E-06 5.761876769 -0.145794792 T(ph)SFDDRLEDDDFDLIEENLGVK ddPTM_HeLa_A485_30min_R1 1 TSFDDRLEDDDFDLIEENLGVK 22 1 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 T(0.5)S(0.5)FDDRLEDDDFDLIEENLGVK 59.512 0.026019 16477000 5003.3 3920.4 2335.9 6322.3 5347.2 4044.4 6388.8 5918.5 2927.2 8753.3 TRUE FALSE FALSE 6116.266824 4378.856677 3200.046615 6667.67124 4814.813993 4256.15853 5023.780688 4466.978595 3514.66219 6571.263403 0.93075965 0.666364504 0.486975855 1.014671127 0.732707502 0.647692577 0.764507581 0.679774698 0.534853342 1 12.68195506 -5.998312347 24.99722543 0.70584259 0.762314478 0.010150015 0.173304314 301.2894794 4462514.739 0.05356259 0.060293901 1.00E-06 5.998312347 0.056471888 T(ph)SGETTHTHREPAGDGK ddPTM_HeLa_A486_30min_R1 1 TSGETTHTHREPAGDGK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 T(0.499)S(0.499)GET(0.001)T(0.001)HTHREPAGDGK 125.23 2.12E-05 51939000 111810 102490 70336 46390 97685 114070 150420 124680 99032 140980 TRUE FALSE FALSE 103972.6964 94368.31914 97571.98286 107998.2644 85432.43642 99997.20318 112783.325 96293.08575 107616.1735 105677.6904 0.983866093 0.892982415 0.923297836 1.021958978 0.808424523 0.946247054 1.067238739 0.911195971 1.018343352 1 16.68931132 -6.536362372 24.88167918 0.993929724 0.924225012 0.227458499 0.063519807 349.9704736 645803.4452 0.023513162 0.018222562 2.91E-07 6.536362372 -0.069704713 T(ph)SGSGFHR ddPTM_HeLa_A485_30min_R1 2 TSGSGFHR 8 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 T(0.5)S(0.5)GSGFHR;T(0.496)S(0.496)GS(0.008)GFHR ; 147.73 0.00036112 387710000 151893 143503 161247 194778 216310 137185 179124 168746 162235 287240 TRUE FALSE FALSE 185681.0738 160284.4275 220898.9753 205418.2289 194773.4169 144367.7945 140852.6941 127360.7789 194794.0764 215636.3543 0.861084275 0.743308929 1.024405074 0.952614088 0.903249443 0.669496546 0.65319549 0.590627584 0.90334525 1 17.7182409 -6.248567374 23.74187856 0.730863608 0.898572996 0.182730711 0.132641273 541.6485885 999047.6964 0.043614211 0.043305493 5.64E-07 6.248567374 0.167709388 T(ph)SGSGFHR ddPTM_HeLa_A486_30min_R1 2 TSGSGFHR 8 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 T(0.499)S(0.499)GS(0.001)GFHR;T(0.497)S(0.497)GS(0.006)GFHR ; 115.78 0.00052756 0 108934 121287 111171 19679.5 124816 144522 149290 124334 129549 121021 TRUE FALSE FALSE 101298.2891 111675.7764 154219.3885 45814.87055 109160.4134 126692.345 111936.063 96025.86239 140778.4116 90716.55389 1.116646133 1.231040771 1.700013745 0.505033189 1.203313053 1.396573609 1.23391 1.058526347 1.551849201 1 16.46907822 -5.997952215 24.99966799 1.256383404 1.143600253 0.027416051 0.306280017 322.1653383 3932941.639 0.095764992 0.107873031 1.00E-06 5.997952215 -0.112783151 T(ph)SPADHGGSVGSESGGSAVDSVAGEHSVSGR ddPTM_HeLa_A485_30min_R1 1 TSPADHGGSVGSESGGSAVDSVAGEHSVSGR 31 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 T(0.5)S(0.5)PADHGGSVGSESGGSAVDSVAGEHSVSGR 236.39 5.67E-50 1124900000 598950 486370 391310 828840 565820 546190 847750 688370 494560 1190900 TRUE FALSE FALSE 732184.3611 543246.7406 536071.8528 874117.4305 509484.9741 574787.6638 666621.287 519546.1782 593813.6556 894030.5469 0.818970184 0.607637784 0.599612457 0.977726582 0.569874235 0.642917254 0.745635917 0.581127994 0.664198396 1 19.7699646 -10.12706234 6.360894248 1.000000878 0.686695136 0.37103016 0.121127047 1.47E-06 2.02E-07 0.114474722 0.027764121 7.46E-11 10.12706234 -0.313305741 T(ph)SPADHGGSVGSESGGSAVDSVAGEHSVSGR ddPTM_HeLa_A486_30min_R1 3 TSPADHGGSVGSESGGSAVDSVAGEHSVSGR 31 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 T(0.5)S(0.5)PADHGGSVGSESGGSAVDSVAGEHSVSGR;T(0.5)S(0.5)PADHGGSVGSESGGSAVDSVAGEHSVSGR;T(0.863)S(0.137)PADHGGSVGSESGGSAVDSVAGEHSVSGR ;; 339.98 1.23E-127 2517950000 214409 191323 141056 64991 209347 246693 259031 220871 149631 273669 TRUE FALSE FALSE 199380.0363 176161.8687 195676.6608 151302.3325 183088.7472 216258.5259 194218.704 170583.4949 162601.1356 205140.5011 0.971919417 0.858737635 0.953866544 0.73755466 0.892504143 1.054197122 0.946759431 0.831544692 0.792633023 1 17.64625283 -10.20045397 3.88806844 1.00008129 0.893950418 0.116072068 0.088316623 126210582.5 195412410.6 122307.4941 0.023046582 6.30E-11 10.20045397 -0.106130872 T(ph)SPAKQQAPPVR ddPTM_HeLa_A485_30min_R1 3 TSPAKQQAPPVR 12 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 T(0.915)S(0.085)PAKQQAPPVR;T(0.987)S(0.013)PAKQQAPPVR;T(0.84)S(0.16)PAKQQAPPVR ;; 155.43 7.08E-08 2782150000 593560 1802600 715600 420519 2023520 2288660 3749370 7584900 790700 760090 TRUE FALSE FALSE 725595.3742 2013398.389 980330.2186 443490.8882 1822051.244 2408490.699 2948286.47 5724691.382 949386.2373 570613.5514 1.271605577 3.528479799 1.718028281 0.777217588 3.19314401 4.220878899 5.166870753 10.03251915 1.663798967 1 19.12215448 -6.229560703 2.351849731 5.143734305 1.953068692 0.176487897 2.412144622 0.41935168 4.563325266 0.896363693 0.845500993 5.89E-07 6.229560703 -3.190665612 T(ph)SPAKQQAPPVR ddPTM_HeLa_A486_30min_R1 1 TSPAKQQAPPVR 12 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 T(0.5)S(0.5)PAKQQAPPVR 111.83 0.00034233 0 253610 109310 85104 126650 277240 113660 249620 298080 66102 306800 TRUE FALSE FALSE 235833.2486 100647.8775 118058.548 294847.6005 242465.974 99637.78481 187162.4358 230213.691 71831.77458 229975.2831 1.025472153 0.437646499 0.513353202 1.282083868 1.054313189 0.43325432 0.81383718 1.001036668 0.31234563 1 17.81111929 -11.41647504 2.280694943 3.05675768 0.769280995 0.049345496 0.310277999 11829807.07 1990120.595 124604653.9 0.082936981 3.83E-12 11.41647504 -2.287476684 T(ph)SPAPWK ddPTM_HeLa_A486_30min_R1 2 TSPAPWK 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.54)S(0.46)PAPWK;T(0.505)S(0.495)PAPWK ; 121.67 0.0092603 1583330000 3882800 5315900 2345800 1916130 3588600 5739600 6021000 5216500 4354000 6035300 TRUE FALSE FALSE 3610635.771 4894648.724 3254156.583 4460847.476 3138484.326 5031506.508 4514482.116 4028816.825 4731408.226 4524021.597 0.798103124 1.081924261 0.719306156 0.986035849 0.693737697 1.112175616 0.997891372 0.890538814 1.045841211 1 22.10917439 -6.279500923 24.99973205 1.001735689 0.86803262 0.287186225 0.119828065 1223.308819 1693227.513 0.040130019 0.035461318 5.25E-07 6.279500923 -0.133703069 T(ph)SPAPWKR ddPTM_HeLa_A485_30min_R1 2 TSPAPWKR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.903)S(0.097)PAPWKR;T(0.5)S(0.5)PAPWKR ; 137.95 0.00039223 2663700000 3271400 3238200 2503300 4338200 4356400 3306100 4856300 4256000 2798100 5331500 TRUE FALSE FALSE 3999111.644 3616879.321 3429374.841 4575184.881 3922661.52 3479202.284 3818711.833 3212209.327 3359653.004 4002455.169 0.999164631 0.903665168 0.856817802 1.143094598 0.980063824 0.869267022 0.954092344 0.802559727 0.839398035 1 21.93245381 -6.257321777 24.1220515 0.884537714 0.975110874 0.185115457 0.086648687 378.4813954 2217250.643 0.030096267 0.02905038 5.53E-07 6.257321777 0.09057316 T(ph)SPAPWKR ddPTM_HeLa_A486_30min_R1 2 TSPAPWKR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.959)S(0.041)PAPWKR;T(0.957)S(0.043)PAPWKR ; 131.52 0.00046234 1416350000 2085000 2109900 1101350 1051590 2054830 2181100 2729000 2597700 1623620 2736300 TRUE FALSE FALSE 1938852.267 1942703.84 1527822.215 2448154.664 1797094.061 1912018.058 2046175.336 2006260.417 1764356.689 2051112.67 0.945268534 0.947146331 0.744874837 1.193573957 0.876155702 0.932185777 0.997592851 0.978132721 0.860194915 1 20.96797531 -5.19310006 24.99999997 0.97074121 0.885902139 0.162805496 0.100550412 369.0889125 135019.1307 0.026487086 0.045876972 6.41E-06 5.19310006 -0.084839071 T(ph)SPCQSPTISEGPVPSLPIRPSR ddPTM_HeLa_A485_30min_R1 2 TSPCQSPTISEGPVPSLPIRPSR 23 1 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 T(0.725)S(0.274)PCQSPTISEGPVPSLPIRPSR;T(0.817)S(0.182)PCQSPTISEGPVPSLPIRPSR ; 110.89 0.00022223 930800000 18503 17976 25327 22719 21215 22300 27407 30286 27336 37065 TRUE FALSE FALSE 22618.92852 20078.13683 34696.51124 23960.08144 19102.76011 23467.59352 21551.27056 22858.31101 32822.08446 27825.37763 0.812888465 0.721576436 1.246937659 0.861087377 0.686522942 0.843388141 0.774518529 0.821491493 1.179573729 1 14.76411365 -7.752096816 24.91834136 1.089786875 0.847975449 0.29705289 0.149953081 216.7652766 578164.3967 0.108059547 0.039615946 1.77E-08 7.752096816 -0.241811425 T(ph)SPCQSPTISEGPVPSLPIRPSR ddPTM_HeLa_A486_30min_R1 1 TSPCQSPTISEGPVPSLPIRPSR 23 1 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 T(0.499)S(0.499)PCQS(0.001)PT(0.001)ISEGPVPSLPIRPSR 79.373 0.0057979 443310000 16492 16068 34716 10932 26926 25893 33336 39086 19628 40474 TRUE FALSE FALSE 15335.99596 14794.71316 48158.96493 25450.24847 23548.69001 22698.58492 24994.98021 30186.97104 21329.37084 30339.04696 0.50548707 0.487645943 1.587359187 0.838861171 0.776184237 0.748164072 0.823855154 0.994987452 0.703033647 1 14.88888815 T(ph)SPDSLR ddPTM_HeLa_A485_30min_R1 1 TSPDSLR 7 0 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.894)S(0.106)PDSLR 171.53 0.0026937 348430000 746100 822270 759660 1091000 1112800 746740 1018200 832890 776280 1510000 TRUE FALSE FALSE 912067.371 918427.3237 1040689.846 1150598.567 1002005.725 785838.1517 800653.2521 628622.4216 932072.2755 1133584.789 0.804586811 0.810197289 0.918052056 1.015008827 0.883926579 0.693232795 0.706302042 0.554543804 0.822234282 1 20.11246087 -6.252366903 22.35178319 0.724361541 0.891031875 0.207033966 0.120767001 194.6583851 479577.0971 0.039717709 0.039057794 5.59E-07 6.252366903 0.166670333 T(ph)SPDSLRR ddPTM_HeLa_A485_30min_R1 5 TSPDSLRR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.977)S(0.02)PDS(0.004)LRR;T(0.939)S(0.05)PDS(0.011)LRR;T(0.641)S(0.359)PDSLRR;T(0.5)S(0.5)PDSLRR;T(0.817)S(0.183)PDSLRR ;;;; 128.91 0.00049078 3030771000 1125236 1270181 1232040 1383225 1588080 1195485 1650680 1540811 1112913 1916950 TRUE FALSE FALSE 1375540.866 1418717.619 1687822.865 1458787.079 1429965.179 1258078.746 1297998.733 1162924.686 1336264.431 1439089.644 0.955840987 0.985843811 1.172840672 1.013687428 0.993659558 0.87421847 0.90195822 0.80809746 0.928548431 1 20.45672503 -6.091907717 2.848076553 0.890167606 1.037803748 0.430116531 0.070117824 0.242519059 3.826715273 0.025004756 0.025710905 8.09E-07 6.091907717 0.147636142 T(ph)SPDSLRR ddPTM_HeLa_A486_30min_R1 6 TSPDSLRR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.943)S(0.057)PDSLRR;T(0.614)S(0.386)PDSLRR;T(0.869)S(0.131)PDSLRR;T(0.605)S(0.395)PDSLRR;T(0.591)S(0.409)PDSLRR;T(0.881)S(0.119)PDSLRR ;;;;; 160.75 3.60E-05 5095200000 2110400 2233210 1511430 898287 2266160 2157310 2599250 2551140 1822890 2762320 TRUE FALSE FALSE 1962471.858 2056242.306 2096696.173 2091257.533 1981917.082 1891163.026 1948890.158 1970301.113 1980899.573 2070617.092 0.947771495 0.993057729 1.012594835 1.009968256 0.957162524 0.913333051 0.941212243 0.951552617 0.95667112 1 20.98162936 -5.890391019 6.101476477 0.947428563 0.992316556 0.323418433 0.026053261 0.219978404 11.04018636 0.008201772 0.009342757 1.29E-06 5.890391019 0.044887993 T(ph)SPDTLR ddPTM_HeLa_A485_30min_R1 1 TSPDTLR 7 0 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.833)S(0.166)PDTLR 176.09 0.003214 3531000000 2559700 2415300 2406000 4036400 3161200 2200900 3172300 2257300 2355500 4758900 TRUE FALSE FALSE 3129096.434 2697748.325 3296079.522 4256898.311 2846459.828 2316135.721 2494512.19 1703693.636 2828227.244 3572593.811 0.875861237 0.755123159 0.922601252 1.191542766 0.796748799 0.648306481 0.698235602 0.476878628 0.791645341 1 21.76854046 -5.995559078 24.99930613 0.692520405 0.931337587 0.275184736 0.159615342 151.7051955 853983.933 0.049871215 0.056331585 1.01E-06 5.995559078 0.238817182 T(ph)SPDTLR ddPTM_HeLa_A486_30min_R1 1 TSPDTLR 7 0 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.676)S(0.324)PDTLR 157.68 0.0020852 608900000 754210 875470 487860 314120 716810 854710 957990 858620 748820 1055900 TRUE FALSE FALSE 701343.7737 806094.5688 676772.4573 731287.2347 626901.0058 749264.5703 718290.7694 663130.9695 813728.3205 791495.7672 0.88609921 1.018444573 0.855055056 0.923930696 0.792045936 0.946643812 0.907510563 0.837819982 1.028089289 1 19.59422211 -7.776162622 24.99931001 1.014044754 0.898209336 0.389792255 0.059052112 278.340186 472593.3378 0.05477214 0.014388658 1.67E-08 7.776162622 -0.115835418 T(ph)SPDTLRR ddPTM_HeLa_A485_30min_R1 10 TSPDTLRR 8 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.5)S(0.5)PDTLRR;T(0.989)S(0.011)PDTLRR;T(0.989)S(0.01)PDTLRR;T(0.604)S(0.396)PDTLRR;T(0.5)S(0.5)PDTLRR;T(0.99)S(0.01)PDTLRR;T(0.5)S(0.5)PDTLRR;T(0.936)S(0.064)PDTLRR;T(0.941)S(0.059)PDTLRR;T(0.5)S(0.5)PDTLRR ;;;;;;;;; 135.55 0.00041842 43482096000 9659898 10564803 9493734 12512518 13895517 9607797 14315127 11985175 9552614 16475997 TRUE FALSE FALSE 11808708.98 11800264.81 13005861.27 13196045.17 12512030.54 10110846.39 11256583.17 9045792.039 11469736.01 12368834.17 0.954714796 0.954032098 1.051502599 1.066878656 1.011577192 0.817445384 0.910076327 0.731337482 0.927309385 1 23.56020619 -6.250433871 24.16493717 0.862494973 1.010473869 0.426414933 0.074676036 399.4254144 877023.4184 0.024226708 0.023990852 5.62E-07 6.250433871 0.147978896 T(ph)SPDTLRR ddPTM_HeLa_A486_30min_R1 9 TSPDTLRR 8 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.995)S(0.005)PDTLRR;T(0.948)S(0.052)PDTLRR;T(0.993)S(0.007)PDTLRR;T(0.934)S(0.055)PDT(0.011)LRR;T(0.984)S(0.016)PDTLRR;T(0.95)S(0.05)PDTLRR;T(0.624)S(0.376)PDTLRR;T(0.5)S(0.5)PDTLRR;T(0.5)S(0.5)PDTLRR ;;;;;;;; 119.22 0.00070057 24758006000 12660614 12211131 8139315 4903633 12182366 12002395 15259570 14441216 10057926 15512810 TRUE FALSE FALSE 11773170.34 11243476.51 11291075.75 11415905.44 10654340.06 10521661.54 11441464.19 11153266.37 10929755.12 11628301.4 1.012458306 0.966906181 0.970999577 0.981734567 0.916242166 0.904832199 0.983932544 0.959148372 0.939927058 1 23.47113704 -3.452722965 0.850680591 0.951561289 1.183303998 0.255522882 0.028351176 11.11665175 2.293519728 0.01018569 3.337972476 0.000352596 3.452722965 0.231742709 T(ph)SPENVQDR ddPTM_HeLa_A486_30min_R1 1 TSPENVQDR 9 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 T(0.944)S(0.056)PENVQDR 139.76 0.00068109 3012300000 1897400 2189000 1237500 805650 1652100 2100400 2465400 2098300 1714700 2405500 TRUE FALSE FALSE 1764402.058 2015535.668 1716693.141 1875593.915 1444878.213 1841274.003 1848530.844 1620562.896 1863331.577 1803147.143 0.978512522 1.117787684 0.952053829 1.040177959 0.801309099 1.02114462 1.025169161 0.898741349 1.033377439 1 20.7820857 -4.789614219 24.9993682 0.967945073 1.048150222 0.135890157 0.076902098 337.3429608 299321.6793 0.019394704 0.040386342 1.62E-05 4.789614219 0.080205149 T(ph)SPGGRT(ph)SPEAR ddPTM_HeLa_A486_30min_R1 1 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 T(0.768)S(0.232)PGGRT(0.747)S(0.253)PEAR 110.32 0.00033131 3759300000 2818100 2866200 1997100 1480300 3180500 3188900 3934600 3668900 2287100 3777300 TRUE FALSE FALSE 2620565.743 2639071.873 2770430.604 3446213.21 2781572.033 2795485.94 2950121.464 2833571.562 2485347.669 2831439.494 0.925524189 0.932060134 0.978453048 1.217124087 0.982387948 0.987302023 1.041915771 1.000752998 0.877768243 1 21.43310427 -9.858661087 22.52739793 1 0.999113569 0 0.08651339 0 0 0.087054867 0.021113906 1.38E-10 9.858661087 -0.000886431 T(ph)SPGGRTS(ph)PEAR ddPTM_HeLa_A485_30min_R1 2 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 T(0.737)S(0.263)PGGRT(0.001)S(0.999)PEAR;T(0.972)S(0.028)PGGRT(0.012)S(0.988)PEAR ; 179.97 1.41E-11 3415400000 1288090 1356650 1311800 1758190 2011360 1342540 2003620 1681050 1221950 2252600 TRUE FALSE FALSE 1574621.177 1515298.416 1797089.409 1854235.468 1811101.936 1412833.318 1575530.219 1268769.852 1467184.157 1691068.276 0.931139918 0.896059868 1.062694768 1.096487643 1.070980966 0.835467934 0.931677474 0.750277129 0.867607877 1 20.68950348 -6.26835364 24.97311604 0.864815361 1.012629543 0.388715904 0.083609902 565.49385 2042459.67 0.030710681 0.027656114 5.39E-07 6.26835364 0.147814183 T(ph)SPGGRTS(ph)PEAR ddPTM_HeLa_A486_30min_R1 2 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 T(0.877)S(0.123)PGGRT(0.055)S(0.945)PEAR;T(0.964)S(0.036)PGGRT(0.328)S(0.672)PEAR ; 130.47 0.00047973 2092463000 1443660 1594700 1073300 746928 1720390 1729120 2025010 1997430 1323710 2085600 TRUE FALSE FALSE 1342466.889 1468330.164 1488910.504 1738886.132 1504602.644 1515798.755 1518331.08 1542658.793 1438450.249 1563352.185 0.85871047 0.939219057 0.952383294 1.112280488 0.96242079 0.969582394 0.971202199 0.986763448 0.920106335 1 20.57621139 -4.409153925 2.022854069 0.986817323 0.844508207 0.403043672 0.047339978 0.545658474 3.081208228 0.013141695 0.128041697 3.90E-05 4.409153925 -0.142309116 T(ph)SPGQFGALGACYNPGGQLGGASAGAYHAR ddPTM_HeLa_A485_30min_R1 2 TSPGQFGALGACYNPGGQLGGASAGAYHAR 30 0 O00358 O00358 FOXE1 Forkhead box protein E1 1 0 T(0.5)S(0.5)PGQFGALGACYNPGGQLGGASAGAYHAR;T(0.5)S(0.5)PGQFGALGACYNPGGQLGGASAGAYHAR ; 207.46 5.87E-29 995240000 62288 86085 70923 59775 95585 75679 103627 89828 101363 70504 TRUE FALSE FALSE 76143.75071 96151.89191 97160.36905 63040.35689 86068.22178 79641.43542 81486.2449 67797.54216 121705.6243 52928.65033 1.438611229 1.816632227 1.835685748 1.191044104 1.626117825 1.504694243 1.539548891 1.280923313 2.299428071 1 15.69176125 -5.183253182 24.99999863 1.51149852 1.708941693 0.068904021 0.339563184 338.5750874 108256.2699 0.087113451 0.150884914 6.56E-06 5.183253182 0.197443173 T(ph)SPGRPLGTTK ddPTM_HeLa_A486_30min_R1 1 TSPGRPLGTTK 11 1 Q7Z6I8;Q7Z6I8-2 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 1 0 T(0.946)S(0.054)PGRPLGTTK 132.31 4.21E-05 431860000 839240 825560 378530 373150 716990 919440 1070300 952000 683620 1062500 TRUE FALSE FALSE 780413.6098 760139.619 525106.9534 868712.058 627058.4285 806008.841 802499.6195 735250.382 742876.732 796443.0843 0.979873672 0.954418004 0.659315102 1.090739659 0.78732359 1.012010597 1.00760448 0.923167514 0.932743025 1 19.60321174 -6.311193212 24.99971379 0.972334299 0.895526433 0.116151601 0.111248813 909.696383 457090.6706 0.03813077 0.033628223 4.88E-07 6.311193212 -0.076807866 T(ph)SPGRVDLPGSSTTLTK ddPTM_HeLa_A485_30min_R1 3 TSPGRVDLPGSSTTLTK 17 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 T(0.5)S(0.5)PGRVDLPGSSTTLTK;T(0.5)S(0.5)PGRVDLPGSSTTLTK;T(0.5)S(0.5)PGRVDLPGSSTTLTK ;; 180.05 3.45E-17 908530000 1726390 1614980 1257940 2698500 2452850 1830330 2949510 2748170 1627020 3684990 TRUE FALSE FALSE 2110419.5 1803837.863 1723304.353 2845912.222 2208635.642 1926163.249 2319323.093 2074176.999 1953547.99 2766389.81 0.762878569 0.652054839 0.622943429 1.028745917 0.798381932 0.696273259 0.838393449 0.749777559 0.706172349 1 21.39957303 -11.37833885 2.310188644 2.770903142 0.763336302 0.303234745 0.108326811 5075129.12 669265.3227 47122440.51 0.027945504 4.18E-12 11.37833885 -2.007566841 T(ph)SPGRVDLPGSSTTLTK ddPTM_HeLa_A486_30min_R1 3 TSPGRVDLPGSSTTLTK 17 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 T(0.844)S(0.156)PGRVDLPGSSTTLTK;T(0.5)S(0.5)PGRVDLPGSSTTLTK;T(0.681)S(0.317)PGRVDLPGSS(0.001)TTLTK ;; 212.76 1.99E-25 935500000 2058380 1890530 973150 781534 1856010 2168650 2568680 2616410 1627410 2940990 TRUE FALSE FALSE 1914098.191 1740717.518 1349979.742 1819450.649 1623211.919 1901104.012 1925969.095 2020710.559 1768475.209 2204546.961 0.868250133 0.789603283 0.612361526 0.825317256 0.736301811 0.86235587 0.873634869 0.916610349 0.802194392 1 21.07205078 -6.38751707 3.764669626 0.88913072 0.762368709 0.394538077 0.077566051 0.268355361 6.750706857 0.028567473 0.024772224 4.10E-07 6.38751707 -0.126762011 T(ph)SPHWK ddPTM_HeLa_A485_30min_R1 1 TSPHWK 6 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 T(0.891)S(0.109)PHWK 124.59 0.0071479 207070000 204940 173150 143240 313350 253440 188280 265870 192140 187100 411060 TRUE FALSE FALSE 250528.196 193398.3863 196230.4367 330467.5171 228206.6237 198138.0497 209064.7025 145017.3637 224649.2538 308590.307 0.811847262 0.626715687 0.635893067 1.070894029 0.739513259 0.642074768 0.677483051 0.469934928 0.727985451 1 18.23533322 -6.008364535 24.89001128 0.671191129 0.781816603 0.03402216 0.168092192 1026.67129 3055034.445 0.053518411 0.057896963 9.81E-07 6.008364535 0.110625474 T(ph)SPHWK ddPTM_HeLa_A486_30min_R1 3 TSPHWK 6 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 T(0.867)S(0.133)PHWK;T(0.893)S(0.107)PHWK;T(0.5)S(0.5)PHWK ;; 134.66 0.0065928 571360000 721870 824600 439500 315602 736880 893820 994000 916240 748770 983380 TRUE FALSE FALSE 671270.6407 759255.6929 609686.1702 734737.4056 644453.6393 783549.5761 745290.6865 707632.1534 813673.9865 737135.2473 0.910647867 1.030008666 0.82710218 0.99674708 0.874267838 1.062965825 1.011063695 0.95997601 1.103832695 1 19.49156982 -6.268487131 24.9934013 1.024034649 0.931676601 0.374822791 0.064272805 634.6014298 2250477.242 0.021182572 0.019084561 5.39E-07 6.268487131 -0.092358048 T(ph)SPINLGLNVNDLLK ddPTM_HeLa_A485_30min_R1 1 TSPINLGLNVNDLLK 15 0 P50616 P50616 TOB1 Protein Tob1 1 0 T(0.855)S(0.145)PINLGLNVNDLLK 234.36 2.56E-40 479620000 308290 266000 199920 566930 440200 364610 627090 613490 332480 805400 TRUE FALSE FALSE 376868.0469 297106.3861 273878.7274 597899.9504 396372.1424 383700.4158 493107.0986 463030.6156 399205.6863 604628.6023 0.623305026 0.491386588 0.452970181 0.98887143 0.655563003 0.634605135 0.815553708 0.765809976 0.660249424 1 19.2056897 -8.30354639 0.062504858 1.624578364 2.21E-13 0.391321153 0.137055669 53.72379089 1.711956689 24.40784829 19.06267408 4.97E-09 8.30354639 -1.624578364 T(ph)SPINLGLNVNDLLK ddPTM_HeLa_A486_30min_R1 2 TSPINLGLNVNDLLK 15 0 P50616 P50616 TOB1 Protein Tob1 1 0 T(0.728)S(0.272)PINLGLNVNDLLK;T(0.5)S(0.5)PINLGLNVNDLLK ; 243.83 1.22E-40 881160000 1532740 1491430 711440 888130 1387560 1857230 2402700 2109930 1352240 2909500 TRUE FALSE FALSE 1425302.841 1373243.655 986928.621 2067611.524 1213519.286 1628103.846 1801519.047 1629544.998 1469453.252 2180942.262 0.653526169 0.629656126 0.452523956 0.948035883 0.556419722 0.74651396 0.826027849 0.747174754 0.673769901 1 21.05652015 -14 0.095955322 1.965307333 0.472538493 0.382218293 0.125756201 206.0452456 1.354585437 40.26055828 2.378712639 1.00E-14 14 -1.49276884 T(ph)SPITR ddPTM_HeLa_A485_30min_R1 1 TSPITR 6 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.594)S(0.406)PITR 114.78 0.037826 1045000000 1411800 1806400 1858500 1626200 2024600 1564900 1741300 1770000 1758300 2224500 TRUE FALSE FALSE 1725850.039 2017642.766 2546036.489 1715035.188 1823023.715 1646835.744 1369257.03 1335904.725 2111174.682 1669973.089 1.033459791 1.20818879 1.524597316 1.026983728 1.091648558 0.986145079 0.819927602 0.79995584 1.264196828 1 20.67139342 -5.493160376 23.80422734 0.982285507 1.25487574 0.335308491 0.165928174 431.2023122 345389.62 0.047967799 0.070993779 3.21E-06 5.493160376 0.272590233 T(ph)SPITR ddPTM_HeLa_A486_30min_R1 1 TSPITR 6 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.888)S(0.112)PITR 148.33 0.01724 1925900000 2752000 3375700 2360400 1196000 3018900 3174100 3745400 3235200 2710100 3679400 TRUE FALSE FALSE 2559099.011 3108197.238 3274410.094 2784348.442 2640241.412 2782511.814 2808261.305 2498615.584 2945013.65 2758054.291 0.9278639 1.126952884 1.187217418 1.009533587 0.957284061 1.008867673 1.01820378 0.905934155 1.067786686 1 21.39521943 -5.498564763 24.47411394 0.989729643 1.087483894 0.226023988 0.072410594 766.0723449 771116.9944 0.020180995 0.02974771 3.17E-06 5.498564763 0.097754251 T(ph)SPKPAVVETVTTAKPQQIQALMDEVTK ddPTM_HeLa_A485_30min_R1 1 TSPKPAVVETVTTAKPQQIQALMDEVTK 28 2 H0YI94;H0YIP0;P56192 H0YI94 MARS "Methionine--tRNA ligase, cytoplasmic" 1 0 T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK 178.89 3.48E-20 2452900000 215310 140350 75530 551880 246430 178260 428750 368750 149980 672220 TRUE FALSE FALSE 263204.9667 156762.7116 103471.6901 582027.807 221894.5639 187593.418 337144.0599 278313.4843 180079.6103 504647.9253 0.521561575 0.310637781 0.205037383 1.15333439 0.439701726 0.371731278 0.668077769 0.551500304 0.35684207 1 18.9449177 -11.15333608 2.360813119 2.121519858 0.51280275 0.25897818 0.249223635 17242338.78 4423665.688 103376340.2 0.062838377 7.03E-12 11.15333608 -1.608717108 T(ph)SPKPAVVETVTTAKPQQIQALMDEVTK ddPTM_HeLa_A486_30min_R1 3 TSPKPAVVETVTTAKPQQIQALMDEVTK 28 2 H0YI94;H0YIP0;P56192 H0YI94 MARS "Methionine--tRNA ligase, cytoplasmic" 1 0 T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK;T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK;T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK ;; 184.88 9.05E-20 580890000 370287 280287 103608 302723 232772 441092 610848 506190 242311 759710 TRUE FALSE FALSE 344331.7935 258076.0373 143727.7923 704754.4428 203575.5652 386674.5537 458007.3695 390941.5871 263314.7126 569473.6711 0.604649189 0.45318344 0.252387072 1.237554041 0.357480206 0.679003391 0.804264346 0.686496333 0.462382593 1 19.11926962 -14 0.136064959 2.180342679 0.486746971 0.1557743 0.262017408 275.7485995 2.322833193 90.19688073 1.738185638 1.00E-14 14 -1.693595708 T(ph)SPLKDNPS(ph)PEPQLDDIKR ddPTM_HeLa_A485_30min_R1 3 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 2 0 T(0.79)S(0.21)PLKDNPS(1)PEPQLDDIKR;T(0.856)S(0.144)PLKDNPS(1)PEPQLDDIKR;T(0.5)S(0.5)PLKDNPS(1)PEPQLDDIKR ;; 186.44 1.63E-17 2394070000 1416390 824470 499570 3145350 1390100 1113380 2665270 1859260 903780 4215730 TRUE FALSE FALSE 1731461.069 920884.5946 684381.7318 3317172.506 1251696.763 1171674.855 2095813.291 1403273.57 1085160.356 3164826.096 0.547095169 0.290974786 0.216246236 1.048137372 0.395502541 0.370217769 0.662220681 0.443396739 0.342881512 1 21.5936948 -10.44656642 3.77183382 1.004232398 0.481668075 0.325403261 0.224755906 631339586.4 798846405.7 27513731.69 0.056284541 3.58E-11 10.44656642 -0.522564323 T(ph)SPLKDNPS(ph)PEPQLDDIKR ddPTM_HeLa_A486_30min_R1 2 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 2 0 T(0.833)S(0.167)PLKDNPS(1)PEPQLDDIKR;T(0.5)S(0.5)PLKDNPS(1)PEPQLDDIKR ; 183.49 2.09E-17 1986630000 1034250 902430 276150 1008270 695820 1364810 2208540 1801020 716610 2667300 TRUE FALSE FALSE 961754.4159 830918.1602 383082.6756 2347303.515 608543.7673 1196433.619 1655939.932 1390967.062 778726.3318 1999390.719 0.481023747 0.415585684 0.191599707 1.174009409 0.304364605 0.598399106 0.828222276 0.695695468 0.389481818 1 20.931129 -14 0.062434227 2.376648984 2.92E-10 0.197687695 0.268236175 639.1555727 2.899158046 135.8302883 21.04547541 1.00E-14 14 -2.376648984 T(ph)SPLKDNPSPEPQLDDIKR ddPTM_HeLa_A485_30min_R1 2 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 T(0.585)S(0.414)PLKDNPSPEPQLDDIKR;T(0.598)S(0.402)PLKDNPSPEPQLDDIKR ; 135.68 1.97E-06 1085490000 795090 568940 336030 1501370 903120 775980 1544230 1431530 525440 1881120 TRUE FALSE FALSE 971955.0275 635472.5839 460341.4804 1583386.041 813202.2018 816609.1129 1214292.645 1080445.023 630890.9884 1412191.403 0.688260122 0.449990407 0.325976691 1.121226229 0.575844181 0.57825668 0.859864068 0.765083982 0.44674609 1 20.42950421 -14 0.129884887 2.054168049 0.516795914 0.173014758 0.220996262 268.0143882 2.193707273 75.27219431 1.720392588 1.00E-14 14 -1.537372135 T(ph)SPLKDNPSPEPQLDDIKR ddPTM_HeLa_A486_30min_R1 2 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 T(0.5)S(0.5)PLKDNPS(0.001)PEPQLDDIKR;T(0.971)S(0.029)PLKDNPSPEPQLDDIKR ; 191.41 1.63E-18 1209110000 902239 729220 248282 657386 616549 1082450 1669350 1397250 589111 1900580 TRUE FALSE FALSE 838996.7053 671433.9514 344423.4396 1530427.83 539215.6753 948908.3245 1251660.973 1079126.677 640175.6158 1424662.397 0.588909139 0.471293376 0.241757935 1.074238945 0.378486634 0.666058377 0.878566723 0.757461332 0.449352504 1 20.44218865 -14 0.057043127 2.378760621 1.92E-11 0.21680847 0.231254914 678.4731744 2.831919355 135.0279665 24.49582848 1.00E-14 14 -2.378760621 T(ph)SPLNSSGSSQGR ddPTM_HeLa_A485_30min_R1 1 TSPLNSSGSSQGR 13 0 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 T(0.616)S(0.384)PLNSSGSSQGR 151.41 2.80E-06 0 212790 164830 175600 317000 199850 141690 195460 152090 178580 370000 TRUE FALSE FALSE 260124.4014 184105.4347 240561.7473 334316.9073 179952.2323 149108.6693 153698.3742 114789.689 214419.368 277765.8093 0.936488195 0.662808123 0.866059606 1.203592725 0.64785595 0.536814339 0.553337989 0.413260686 0.771942985 1 18.0835095 -5.967161029 24.982872 0.609851909 0.899197856 0.291508206 0.194085168 217.2654826 165287.9386 0.059407072 0.067360904 1.08E-06 5.967161029 0.289345947 T(ph)SPPCS(ph)PANLSR ddPTM_HeLa_A485_30min_R1 4 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 T(0.757)S(0.243)PPCS(1)PANLSR;T(0.759)S(0.241)PPCS(1)PANLSR;T(0.662)S(0.338)PPCS(1)PANLSR;T(0.549)S(0.451)PPCS(1)PANLSR ;;; 135.02 4.40E-05 1966350000 807770 694230 716660 1154020 1070290 632280 981560 731880 714340 1493600 TRUE FALSE FALSE 987455.6497 775414.1595 981782.3567 1217061.19 963728.1696 665385.2031 771841.6874 552385.2825 857701.4857 1121273.008 0.880655864 0.691548048 0.875596175 1.085428064 0.859494666 0.593419443 0.688361962 0.492641202 0.764935462 1 20.09670616 -6.187354614 7.133113702 0.675236703 0.880633343 0.22594103 0.152226053 0.349712484 29.23267988 0.050176231 0.050151264 6.50E-07 6.187354614 0.20539664 T(ph)SPPCS(ph)PANLSR ddPTM_HeLa_A486_30min_R1 1 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 T(0.57)S(0.43)PPCS(1)PANLSR 115.91 0.00066485 164090000 154730 195470 118270 96522 182980 203210 251290 259340 150720 239490 TRUE FALSE FALSE 143884.226 179980.2453 164067.3114 224708.094 160028.9422 178140.0163 188414.5841 200293.9434 163784.531 179520.1452 0.801493481 1.002562944 0.91392145 1.251715197 0.891426096 0.992312122 1.049545631 1.115718479 0.912346248 1 17.45378622 -3.840254516 1.427897305 1.025390711 0.424423983 0.281238967 0.102117249 4.540012188 3.742313919 0.027917775 5.226756535 0.000144459 3.840254516 -0.600966729 T(ph)SPPGGELSPGAGR ddPTM_HeLa_A485_30min_R1 2 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 T(0.62)S(0.38)PPGGELSPGAGR;T(0.621)S(0.379)PPGGELSPGAGR ; 163.33 3.44E-11 1426120000 571500 579730 515190 832480 856370 650170 910380 868120 561400 1093760 TRUE FALSE FALSE 698628.2033 647524.3805 705780.2198 877956.2744 771106.7959 684211.8958 715869.8759 655212.2088 674067.8305 821105.7612 0.850838268 0.788600459 0.859548493 1.06923653 0.939107765 0.83328108 0.871836382 0.797963234 0.820926929 1 19.64720853 -9.419206415 14.09058936 0.999999999 0.872164452 0.19998863 0.077819566 0 0 0.08343416 0.020235756 3.81E-10 9.419206415 -0.127835548 T(ph)SPPLLDR ddPTM_HeLa_A485_30min_R1 4 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.656)S(0.344)PPLLDR;T(0.704)S(0.296)PPLLDR;T(0.704)S(0.296)PPLLDR;T(0.695)S(0.305)PPLLDR ;;; 171.7 0.00010254 31349600000 8512900 8687600 7718400 11561900 11053900 7496500 11137200 8830100 7615000 14586100 TRUE FALSE FALSE 10406565.24 9703539.248 10573757.35 12193497.32 9953334.903 7889005.148 8757646.237 6664504.13 9143260.651 10950053.71 0.950366593 0.886163621 0.965635204 1.113555937 0.908975898 0.720453557 0.799781122 0.608627529 0.834996877 1 23.38443461 -6.094333466 4.920338741 0.770187093 0.975738653 0.395339217 0.107087646 0.206872896 8.147651117 0.035024697 0.035396929 8.05E-07 6.094333466 0.20555156 T(ph)SPPLLDR ddPTM_HeLa_A486_30min_R1 4 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.684)S(0.316)PPLLDR;T(0.86)S(0.14)PPLLDR;T(0.744)S(0.256)PPLLDR;T(0.75)S(0.25)PPLLDR ;;; 183.72 3.29E-05 38536400000 6301200 6642200 4142880 2553170 5996900 6694200 7785300 7297800 5394600 7894200 TRUE FALSE FALSE 5859518.419 6115847.882 5747114.086 5943908.79 5244712.883 5868337.666 5837335.595 5636250.25 5862208.272 5917440.937 0.99021156 1.03352918 0.97121613 1.004472855 0.886314361 0.991701941 0.98646284 0.952481032 0.990666123 1 22.49654197 -4.783573446 23.80985719 0.970406366 1.011870343 0.171464378 0.033896498 188.445458 202713.0738 0.008692292 0.018121557 1.65E-05 4.783573446 0.041463976 T(ph)SPQVLGSILK ddPTM_HeLa_A485_30min_R1 1 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 T(0.893)S(0.107)PQVLGSILK 142.38 9.99E-05 0 203570 190130 133240 293990 267300 184510 317180 302820 159930 374980 TRUE FALSE FALSE 248853.4442 212364.0496 182531.0206 310049.9293 240686.6735 194170.6583 249411.9019 228552.9202 192026.484 281504.387 0.884012668 0.75438984 0.648412703 1.101403543 0.855001501 0.689760683 0.885996501 0.811898254 0.682143842 1 18.10279788 -11.32451425 2.333773108 2.062454706 0.814291817 0.16648788 0.12576722 7158897.557 965088.2774 40469455.92 0.032482939 4.74E-12 11.32451425 -1.248162889 T(ph)SPQVLGSILK ddPTM_HeLa_A486_30min_R1 2 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 T(0.951)S(0.049)PQVLGSILK;T(0.654)S(0.346)PQVLGSILK ; 231.69 6.05E-18 1134390000 1090380 1071390 544920 499740 929730 1048540 1403050 1246650 815580 1382420 TRUE FALSE FALSE 1013949.993 986489.1545 755927.6175 1163419.975 813114.594 919181.7956 1051992.05 962815.0092 886275.1311 1036253.034 0.978477225 0.951977096 0.729481693 1.12271804 0.784667998 0.887024467 1.015188391 0.929131185 0.855269034 1 19.98294489 T(ph)SPSGGTWSSVVSGAK ddPTM_HeLa_A485_30min_R1 1 TSPSGGTWSSVVSGAK 16 0 F8WB06 F8WB06 ATXN2 1 0 T(0.75)S(0.25)PSGGTWSSVVSGAK 246.96 4.03E-41 195710000 225200 240580 190730 322270 355500 273910 386480 389960 230720 478170 TRUE FALSE FALSE 275294.9631 268713.7382 261288.9639 339874.7941 320105.1718 288251.5041 303905.3907 294321.6986 277023.3877 358971.0191 0.766900247 0.748566664 0.727883172 0.946802878 0.891729847 0.802993804 0.846601465 0.819903789 0.771715189 1 18.45350785 T(ph)SPSGGTWSSVVSGAK ddPTM_HeLa_A486_30min_R1 1 TSPSGGTWSSVVSGAK 16 0 F8WB06 F8WB06 ATXN2 1 0 T(0.494)S(0.494)PS(0.012)GGTWSSVVSGAK 98.902 0.0027804 191590000 296580 296790 171120 141540 268460 304150 381820 385950 234400 387190 TRUE FALSE FALSE 275791.2735 273271.2795 237382.2468 329512.273 234787.2435 266627.0654 286284.5975 298077.6102 254717.9807 290235.1038 0.950234034 0.941551439 0.817896401 1.135328803 0.808955362 0.918658914 0.986388599 1.027021219 0.87762637 1 18.1468625 -13.9986625 0.115697457 1.192046397 0.911052239 0.034160399 0.091986406 636.2266456 4.81908291 28.5771563 0.969521355 1.00E-14 13.9986625 -0.280994158 T(ph)SPSGGTWSSVVSGVPR ddPTM_HeLa_A485_30min_R1 1 TSPSGGTWSSVVSGVPR 17 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 T(0.694)S(0.306)PSGGTWSSVVSGVPR 335.85 5.25E-91 738440000 288910 288410 236160 348590 375590 231140 352220 322860 244850 422920 TRUE FALSE FALSE 353177.0328 322137.0407 323525.4114 367632.589 338194.9408 243242.133 276965.3196 243678.0788 293989.1491 317493.8273 1.112390234 1.014624579 1.018997485 1.15792043 1.065201625 0.766131849 0.872348675 0.767504933 0.925968078 1 18.27636902 -6.244969702 23.81188025 0.852232148 1.072163681 0.649802964 0.075780753 252.9934708 365778.1048 0.024050277 0.023972106 5.69E-07 6.244969702 0.219931534 T(ph)SPSGGTWSSVVSGVPR ddPTM_HeLa_A486_30min_R1 1 TSPSGGTWSSVVSGVPR 17 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 T(0.59)S(0.41)PSGGTWSSVVSGVPR 88.73 0.0012387 0 85865 103010 76422 47338 108720 109360 113270 114070 87646 117750 TRUE FALSE FALSE 79846.30691 94847.11244 106014.6451 110205.2563 95083.32383 95868.27509 84928.64795 88098.75113 95243.22585 88264.63358 0.904624012 1.074576629 1.201099928 1.248577736 1.077252802 1.086145959 0.96220473 0.998120624 1.079064422 1 16.42954787 -6.602822997 5.476202787 1.009994012 1.110649559 0.189997096 0.089123949 0.355409885 18.14223827 0.037383244 0.02876295 2.50E-07 6.602822997 0.100655547 T(ph)SPSGGTWSSVVSGVPRLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TSPSGGTWSSVVSGVPRLSPK 21 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 2 0 T(0.494)S(0.494)PS(0.011)GGT(0.001)WS(0.001)S(0.001)VVS(0.001)GVPRLS(0.999)PK;T(0.682)S(0.305)PS(0.013)GGTWSSVVSGVPRLS(1)PK ; 114.85 4.78E-05 986140000 483220 407570 319260 794700 830990 527840 1003090 1143660 413460 1035760 TRUE FALSE FALSE 590710.6219 455231.7661 437367.5595 838112.4487 748253.7178 555476.8862 788771.627 863175.5918 496437.6295 777564.0938 0.759693801 0.585458832 0.562484254 1.077869278 0.962304875 0.714380835 1.014413646 1.110102175 0.638452358 1 19.56860207 -5.252198199 24.99881579 0.931407128 0.630836934 0.45152783 0.149060764 599.5768804 1621944.499 0.040198825 0.06842157 5.60E-06 5.252198199 -0.300570193 T(ph)SPSKSPFLHSGMK ddPTM_HeLa_A485_30min_R1 1 TSPSKSPFLHSGMK 14 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;H0YEW5 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 T(0.399)S(0.399)PS(0.101)KS(0.101)PFLHSGMK 63.998 0.022508 1385500000 190800 128530 78845 266980 142160 230920 289060 318610 136870 378430 TRUE FALSE FALSE 233242.8017 143560.4654 108013.0465 281564.4414 128006.0512 243010.6141 227299.9696 240470.3979 164338.5536 284094.3655 0.821004673 0.50532669 0.380201298 0.991094775 0.450575818 0.855386955 0.800086159 0.846445502 0.578464671 1 18.11601069 -6.086176758 0.992505071 0.807678204 0.605194846 0.138730944 0.198374851 1.090930531 2.307881853 0.103219441 0.112240046 8.20E-07 6.086176758 -0.202483358 T(ph)SPSKSPFLHSGMK ddPTM_HeLa_A486_30min_R1 1 TSPSKSPFLHSGMK 14 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;H0YEW5 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 T(0.498)S(0.498)PS(0.004)KS(0.001)PFLHSGMK 84.375 0.0083662 453640000 573570 499110 235310 62925 434680 594450 770810 654400 425870 628830 TRUE FALSE FALSE 533365.7049 459558.7059 326428.3338 146492.5801 380158.3812 521112.8029 577945.1852 505407.4055 462784.7545 471366.875 1.131529883 0.97494909 0.692514369 0.310782509 0.806502114 1.105535477 1.226104794 1.072216637 0.981793119 1 18.84649085 -6.228861034 5.838564257 1.091403399 0.760620334 0.331063972 0.207558329 0.237725028 25.01151303 0.077617094 0.075971533 5.90E-07 6.228861034 -0.330783065 T(ph)SPTFR ddPTM_HeLa_A485_30min_R1 3 TSPTFR 6 0 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 1 0 T(0.5)S(0.5)PTFR;T(0.811)S(0.189)PTFR;T(0.912)S(0.088)PTFR ;; 164.52 0.012197 4697130000 4107260 4037280 3754410 5729410 6416510 3778840 5895860 5409410 3861420 8247100 TRUE FALSE FALSE 5020905.817 4509404.776 5143322.493 6042393.161 5777659.735 3976694.219 4636161.346 4082743.716 4636371.575 6191249.747 0.810968063 0.728351296 0.830740594 0.975956941 0.933197653 0.642308804 0.748824799 0.659437736 0.748858755 1 22.56179923 -6.256463957 24.88290968 0.737909552 0.854038467 0.142833341 0.111154478 665.8786253 3330172.606 0.037570244 0.036443203 5.54E-07 6.256463957 0.116128915 T(ph)SPTPPESATTVK ddPTM_HeLa_A486_30min_R1 1 TSPTPPESATTVK 13 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 T(0.58)S(0.415)PT(0.005)PPESATTVK 119.39 0.00055224 1473300000 1484700 1499000 874300 846170 1504800 1855400 2401700 2256600 1298800 2373300 TRUE FALSE FALSE 1380630.197 1380213.781 1212852.375 1969926.523 1316053.952 1626499.612 1800769.257 1742821.441 1411381.03 1779010.232 0.776066473 0.775832401 0.681756829 1.107316016 0.7397675 0.914272207 1.012230972 0.979657907 0.793351834 1 20.76264338 -5.236040785 24.99972693 0.928571604 0.747679942 0.415925697 0.103315235 784.6435694 772320.2887 0.027362546 0.047370755 5.81E-06 5.236040785 -0.180891661 T(ph)SPVKSNTPAAHLEIKPDELAK ddPTM_HeLa_A486_30min_R1 1 TSPVKSNTPAAHLEIKPDELAK 22 2 B8ZZZ7;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3 B8ZZZ7 SPATS2L SPATS2-like protein 1 0 T(0.499)S(0.499)PVKS(0.001)NT(0.001)PAAHLEIKPDELAK 100.93 0.00036393 177070000 83362 67467 36013 74176 80866 108510 162790 152280 59044 151900 TRUE FALSE FALSE 77518.75428 62120.66921 49958.19806 172685.4766 70723.03223 95123.13945 122058.2202 117609.1682 64161.98146 113863.2513 0.680805733 0.545572593 0.438756117 1.516604125 0.621122543 0.835415627 1.071972026 1.032898384 0.563500346 1 16.79694268 T(ph)SPYILR ddPTM_HeLa_A485_30min_R1 3 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 0 T(0.854)S(0.146)PYILR;T(0.837)S(0.163)PYILR;T(0.938)S(0.062)PYILR ;; 182.09 1.23E-05 1055680000 2683960 2512260 2294080 3691910 3522520 2167610 3189850 2524080 2293390 4490880 TRUE FALSE FALSE 3280997.642 2806046.953 3142755.657 3893589.695 3171805.54 2281102.708 2508312.489 1905045.422 2753652.337 3371386.265 0.973189479 0.832312507 0.932184986 1.154892792 0.940801585 0.676606751 0.744000329 0.565062936 0.816771536 1 21.6849105 -6.203212959 6.386582686 0.732473623 0.969259473 0.383257194 0.12849133 0.221199056 19.29171638 0.042404392 0.04221426 6.26E-07 6.203212959 0.23678585 T(ph)SPYILR ddPTM_HeLa_A486_30min_R1 2 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 0 T(0.773)S(0.227)PYILR;T(0.5)S(0.5)PYILR ; 182.09 0.0030083 1781940000 1807900 1954520 1253830 706370 1594180 1810500 2167200 2012860 1580430 2194110 TRUE FALSE FALSE 1681175.546 1799636.717 1739346.555 1644465.058 1394223.079 1587138.918 1624943.638 1554575.718 1717422.945 1644690.575 1.022183487 1.094209905 1.057552455 0.999862882 0.847711479 0.965007608 0.987993525 0.945208626 1.044222525 1 20.64938476 -5.385972847 4.159531218 0.960763615 1.06122046 0.399028357 0.050280956 0.218794735 6.328982273 0.014693111 0.022346637 4.11E-06 5.385972847 0.100456845 T(ph)SS(ph)EEEDSRR ddPTM_HeLa_A485_30min_R1 1 TSSEEEDSRR 10 1 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 2 0 T(0.499)S(0.499)S(1)EEEDS(0.002)RR 138.63 0.0020516 214800000 372650 398210 180650 774150 209860 305660 373260 357680 291000 852690 TRUE FALSE FALSE 455544.7069 444777.1955 247479.9525 816439.8542 188965.6015 321663.885 293509.9517 269958.4192 349401.0308 640130.0756 0.711643968 0.69482315 0.38660885 1.27542805 0.295198755 0.502497691 0.458516109 0.421724317 0.545828175 1 19.28800557 -9.998999326 4.9865066 1.000004225 0.585635415 0.183573316 0.260595796 345346966.5 50.64857094 16755.39602 0.06241152 1.00E-10 9.998999326 -0.414368809 T(ph)SS(ph)EEEDSRR ddPTM_HeLa_A486_30min_R1 1 TSSEEEDSRR 10 1 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 2 0 T(0.635)S(0.117)S(0.895)EEEDS(0.353)RR 81.642 0.0021552 0 419070 244450 237290 136570 255610 442110 266850 234960 423630 565080 TRUE FALSE FALSE 389695.3571 225078.8917 329175.0428 317941.8619 223549.0103 387566.9632 200081.3075 181464.7371 460350.5895 423580.2899 0.920003518 0.531372439 0.777125496 0.750605893 0.527760653 0.914978748 0.472357455 0.428406943 1.086808335 1 18.69227593 -7.780992921 24.96555734 1.043404654 0.66473446 0.448732059 0.167620113 242.9470112 310180.885 0.156239355 0.040577001 1.66E-08 7.780992921 -0.378670194 T(ph)SSDPNLNNHCQEVR ddPTM_HeLa_A485_30min_R1 1 TSSDPNLNNHCQEVR 15 0 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 0 T(0.333)S(0.333)S(0.333)DPNLNNHCQEVR 65.47 0.0058078 0 134370 227670 319420 154890 342160 217180 240080 260980 249490 203450 TRUE FALSE FALSE 164260.1429 254294.026 437586.7502 163351.2485 308093.349 228551.209 188784.9467 196974.2458 299560.3545 152733.6592 1.075467868 1.664950786 2.865031535 1.069517023 2.017193529 1.496403675 1.236040226 1.289658395 1.961325068 1 17.22065851 -6.502069084 19.21504108 1.391654927 1.75947983 0.098409477 0.524790871 98.42624603 90885.57011 0.18614367 0.16132776 3.15E-07 6.502069084 0.367824903 T(ph)SSDPNLNNHCQEVR ddPTM_HeLa_A486_30min_R1 2 TSSDPNLNNHCQEVR 15 0 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 0 T(0.333)S(0.333)S(0.333)DPNLNNHCQEVR;T(0.333)S(0.333)S(0.333)DPNLNNHCQEVR ; 121.82 6.19E-05 351360000 527230 586700 500550 176675 628340 516570 627780 597330 505830 608170 TRUE FALSE FALSE 490273.8996 540207.7553 694376.3652 411308.3287 549527.7382 452840.8455 470702.804 461330.9986 549675.7517 455880.2735 1.075444427 1.184977255 1.523155104 0.902228836 1.205421182 0.993332837 1.032514086 1.011956484 1.205745858 1 18.79829546 -5.28499764 24.99967831 1.054034282 1.253570874 0.332786696 0.13672131 903.9939873 959303.0004 0.037790583 0.056090517 5.19E-06 5.28499764 0.199536593 T(ph)SSEEEDSRR ddPTM_HeLa_A485_30min_R1 1 TSSEEEDSRR 10 1 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 T(0.719)S(0.247)S(0.034)EEEDSRR 177.83 1.89E-08 324600000 205430 224550 82350 315910 82175 199340 189420 229830 161810 360860 TRUE FALSE FALSE 251127.1948 250809.1692 112814.6919 333167.3634 73993.36847 209777.1342 148948.8696 173463.8321 194283.7828 270904.2431 0.926996166 0.925822225 0.416437523 1.229834422 0.273134771 0.774358983 0.549821102 0.640314194 0.717167736 1 18.04742346 -4.610805398 24.99998849 0.687095267 0.926910617 0.107816809 0.258194932 36.7588067 10440.5921 0.060836123 0.16095729 2.45E-05 4.610805398 0.23981535 T(ph)SSEEEDSRR ddPTM_HeLa_A486_30min_R1 2 TSSEEEDSRR 10 1 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 T(0.456)S(0.456)S(0.088)EEEDSRR;T(0.456)S(0.456)S(0.087)EEEDSRR ; 138.24 2.41E-05 324420000 260664 96477 172410 105469 82352 411610 182037 153879 324250 346390 TRUE FALSE FALSE 242392.7997 88831.81116 239171.7693 245537.1621 72022.64426 360829.7431 136489.4172 118844.1109 352356.2511 259651.6894 0.933530609 0.342119134 0.921125412 0.945640534 0.277381766 1.389668382 0.525663505 0.457705903 1.35703431 1 17.98621809 -7.768430404 24.98137064 1.178517192 0.726003477 0.231882079 0.330804646 251.0719212 897127.8923 0.281906544 0.079047892 1.70E-08 7.768430404 -0.452513715 T(ph)SSEEEDSRREEPSLLLVLK ddPTM_HeLa_A485_30min_R1 3 TSSEEEDSRREEPSLLLVLK 20 2 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 T(0.333)S(0.333)S(0.333)EEEDSRREEPSLLLVLK;T(0.333)S(0.333)S(0.333)EEEDSRREEPSLLLVLK;T(0.333)S(0.333)S(0.333)EEEDSRREEPSLLLVLK ;; 183.01 5.82E-19 385100000 189434 134305 208180 426186 638431 291081 609879 641382 334095 713609 TRUE FALSE FALSE 231572.9398 150010.8015 285194.4451 449467.462 574866.568 306321.5511 479573.3694 484082.0589 401144.802 535719.4093 0.432265353 0.280017485 0.532357873 0.838997905 1.073073997 0.57179476 0.895195061 0.903611201 0.748796469 1 19.03111804 -5.124556784 3.099081087 0.856856256 0.360984513 0.71111454 0.133337274 0.134358688 2.441192003 0.036890026 0.072070103 7.51E-06 5.124556784 -0.495871744 T(ph)SSEEEDSRREEPSLLLVLK ddPTM_HeLa_A486_30min_R1 2 TSSEEEDSRREEPSLLLVLK 20 2 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 T(0.333)S(0.333)S(0.333)EEEDSRREEPSLLLVLK;T(0.333)S(0.333)S(0.333)EEEDSRREEPSLLLVLK ; 213.05 4.75E-27 383470000 340350 401270 353990 405150 825770 629370 945460 1014680 398370 522660 TRUE FALSE FALSE 316493.2226 369471.9038 491064.4082 943209.6751 722194.2266 551724.7284 708895.9079 783659.5143 432901.0324 391782.5341 0.807828821 0.943053535 1.253410669 2.407482706 1.84335483 1.408242278 1.809411718 2.000241068 1.104952352 1 18.57969356 -5.014728604 9.044108985 1.709498935 0.929171735 0.378800794 0.396764388 0.202307791 113.544407 0.104302057 0.19403931 9.67E-06 5.014728604 -0.7803272 T(ph)SSFHLLR ddPTM_HeLa_A486_30min_R1 2 TSSFHLLR 8 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 T(0.333)S(0.333)S(0.333)FHLLR;T(0.333)S(0.333)S(0.333)FHLLR ; 101.9 0.0011612 242090000 111516.2 99470.7 71486.3 9501.45 104140.1 106698.9 121734.8 119637.2 104974.5 79066.5 TRUE FALSE FALSE 103699.4903 91588.27947 99167.70983 22119.85578 91077.87759 93535.47455 91275.46546 92398.42122 114073.7742 59267.73376 1.749678681 1.545331222 1.673215821 0.373219193 1.536719422 1.578185441 1.540053241 1.55900041 1.92471969 1 15.85495927 -5.958773421 24.99987556 1.556662623 1.32205206 0.04356189 0.412601716 459.7494273 278790.8752 0.130603892 0.148090738 1.10E-06 5.958773421 -0.234610563 T(ph)SSGTSLSAMHSSGSSGK ddPTM_HeLa_A485_30min_R1 1 TSSGTSLSAMHSSGSSGK 18 0 Q12888;Q12888-2;Q12888-3;A6NNK5;M0R142 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.329)S(0.329)S(0.329)GT(0.006)S(0.006)LS(0.001)AMHSSGSSGK 114.88 0.00018487 292480000 111850 273900 254730 42695 381450 180810 227910 258120 234610 99458 TRUE FALSE FALSE 136730.6466 305930.2224 348965.2272 45027.31974 343471.4986 190276.932 179215.1666 194815.6653 281694.075 74664.95099 1.831256096 4.097373913 4.673748828 0.603058318 4.600170416 2.548410325 2.400258277 2.609198328 3.772775195 1 16.18814356 -10.87598782 2.539698172 0.018817513 3.027675519 0.195953374 1.224352271 14894931.93 8194122.475 87778299.29 0.299800317 1.33E-11 10.87598782 3.008858006 T(ph)SSIADEGTYTLDSILR ddPTM_HeLa_A485_30min_R1 1 TSSIADEGTYTLDSILR 17 0 E7ERV5;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 E7ERV5 MYO5A Unconventional myosin-Va 1 0 T(0.333)S(0.333)S(0.333)IADEGTYTLDSILR 79.771 0.018075 47050000 59295 51175 54147 89482 74278 50303 93757 72129 63449 130940 TRUE FALSE FALSE 72484.96818 57159.47109 74178.22854 94370.17508 66882.62151 52936.7873 73725.05103 54439.24966 76182.63231 98299.06777 0.737392224 0.581485383 0.754617823 0.960031231 0.680399347 0.538527867 0.750007632 0.553812471 0.775008696 1 16.58489011 -10.61285031 3.42087002 1.014196205 0.700374405 0.357641902 0.119153839 175284095.1 229503343.7 22428107.3 0.030763851 2.44E-11 10.61285031 -0.3138218 T(ph)SSIADEGTYTLDSILR ddPTM_HeLa_A486_30min_R1 1 TSSIADEGTYTLDSILR 17 0 E7ERV5;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 E7ERV5 MYO5A Unconventional myosin-Va 1 0 T(0.358)S(0.358)S(0.284)IADEGTYTLDSILR 121.31 0.00018982 52200000 80881 84047 63906 39565 78703 103680 115600 92910 91964 105000 TRUE FALSE FALSE 75211.65957 77386.80963 88652.11466 92109.3195 68831.33586 90889.01574 86675.65731 71756.42121 99935.51357 78707.31656 0.955586632 0.983222564 1.126351635 1.170276456 0.874522711 1.154772132 1.101240153 0.911686795 1.269710593 1 16.26421013 -4.628218282 6.371400028 1.072568423 0.962615251 0.124445593 0.113735249 0.404828897 20.94357753 0.027693286 0.0750469 2.35E-05 4.628218282 -0.109953171 T(ph)SSLDTLAAPYLAGHWPR ddPTM_HeLa_A485_30min_R1 3 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.333)S(0.333)S(0.333)LDTLAAPYLAGHWPR;T(0.333)S(0.333)S(0.333)LDTLAAPYLAGHWPR;T(0.37)S(0.37)S(0.26)LDTLAAPYLAGHWPR ;; 212.69 8.19E-26 885120000 156986 174026 160620 218152 217500 163585 249457 217734 160486 276958 TRUE FALSE FALSE 191906.9941 194376.8269 220040.022 230069.0914 195844.9363 172150.0576 196158.4741 164334.3951 192694.0681 207917.4676 0.922996015 0.934874925 1.058304646 1.106540465 0.941935945 0.82797304 0.943443936 0.790382823 0.926781527 1 17.66565144 -5.997023764 24.89542134 0.887193311 1.00686277 0.31501786 0.074252146 97.58593143 816264.5622 0.023387764 0.0263803 1.01E-06 5.997023764 0.119669458 T(ph)SSLDTLAAPYLAGHWPR ddPTM_HeLa_A486_30min_R1 3 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.333)S(0.333)S(0.333)LDTLAAPYLAGHWPR;T(0.333)S(0.333)S(0.333)LDTLAAPYLAGHWPR;T(0.332)S(0.332)S(0.332)LDT(0.003)LAAPYLAGHWPR ;; 246.68 1.54E-45 1048248000 263546 296075 181621 101990 256539 271427 321257 320068 259292 352176 TRUE FALSE FALSE 245072.7864 272612.9387 251949.5152 237437.8743 224361.4865 237941.0964 240875.1007 247195.5034 281767.6393 263988.8373 0.928345262 1.032668432 0.954394579 0.899423918 0.849890051 0.901330143 0.912444265 0.936386197 1.067346795 1 18.0101174 -7.702292571 7.293904589 1.033171893 0.926111158 0.455744118 0.046720056 0.198707756 20.16063605 0.036419794 0.013367504 1.98E-08 7.702292571 -0.107060735 T(ph)SSLPPLDWPLPAHFGQCELK ddPTM_HeLa_A485_30min_R1 1 TSSLPPLDWPLPAHFGQCELK 21 0 H3BRS1;Q12968;I3L3K7;H3BR83;Q12968-5;Q12968-6;Q12968-4;Q12968-3;Q12968-2;H3BU30 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 1 0 T(0.358)S(0.358)S(0.283)LPPLDWPLPAHFGQCELK 177.5 1.35E-14 100270000 5620.1 4935.4 3224.5 9910 7545 6811.6 11033 10300 5516.6 12945 TRUE FALSE FALSE 6870.271856 5512.552098 4417.376733 10451.35821 6793.793308 7168.244843 8675.709419 7773.90885 6623.731019 9718.049735 0.70695994 0.567248805 0.454553831 1.075458399 0.699090197 0.737621749 0.892741821 0.799945366 0.681590566 1 13.2464511 -2.599153432 0.107995607 1.063508578 6.52E-17 0.253044341 0.154587528 115.0378355 1.260871868 1.845646129 17.97198569 0.002516788 2.599153432 -1.063508578 T(ph)SSPGGKKPPPTPQR ddPTM_HeLa_A485_30min_R1 1 TSSPGGKKPPPTPQR 15 2 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 T(0.789)S(0.099)S(0.112)PGGKKPPPTPQR 67.995 0.010751 925840000 502760 482220 279950 573460 654960 608140 1116800 1262100 391500 869230 TRUE FALSE FALSE 614597.2275 538611.4342 383515.1547 604786.6677 589749.8827 639981.27 878186.5566 952567.9961 470070.4589 652546.958 0.941843679 0.825398736 0.587720393 0.92680942 0.903766197 0.980743626 1.345782929 1.459769269 0.720362655 1 19.3157222 -6.349891751 2.311323969 1.166404229 0.816943378 0.292382876 0.209204758 0.346856637 3.634612336 0.084137594 0.073214686 4.47E-07 6.349891751 -0.34946085 T(ph)SSPGGKKPPPTPQR ddPTM_HeLa_A486_30min_R1 1 TSSPGGKKPPPTPQR 15 2 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 T(0.375)S(0.375)S(0.249)PGGKKPPPTPQR 93.371 0.00098023 947860000 900070 593720 310680 478610 779350 876280 1271300 1158200 477060 1334500 TRUE FALSE FALSE 836979.741 546671.4649 430983.6163 1114228.268 681596.6558 768173.483 953207.2936 894503.1433 518411.9449 1000332.514 0.836701526 0.546489749 0.430840356 1.113857894 0.681370091 0.76791814 0.952890444 0.894205808 0.518239623 1 19.93204821 -5.244221295 24.9985496 0.836742957 0.598858487 0.265812836 0.183875417 1144.082131 1661064.983 0.048856391 0.084364547 5.70E-06 5.244221295 -0.237884469 T(ph)SSPHSETQGWK ddPTM_HeLa_A486_30min_R1 1 TSSPHSETQGWK 12 0 H7C1N2;J3KR05;O75128-2;O75128-6;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 T(0.333)S(0.333)S(0.333)PHSETQGWK 115.06 0.00035638 364680000 315900 308910 183810 61834 322220 344220 407480 385020 249050 318650 TRUE FALSE FALSE 293757.0413 284430.8466 254986.1546 143952.6769 281804.163 301753.6362 305524.1941 297359.3509 270637.8545 238857.9659 1.229839835 1.190794895 1.067522088 0.602670614 1.179798052 1.263318286 1.279104061 1.244921222 1.133049314 1 17.86579347 -5.969282627 24.99982544 1.207129439 1.01957932 0.161462386 0.175439977 344.7369554 280568.2482 0.057345147 0.065022739 1.07E-06 5.969282627 -0.187550119 T(ph)SSPIPAQHAPRPYASSLEK ddPTM_HeLa_A486_30min_R1 2 TSSPIPAQHAPRPYASSLEK 20 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 0 T(0.333)S(0.333)S(0.333)PIPAQHAPRPYASSLEK;T(0.356)S(0.356)S(0.287)PIPAQHAPRPYASSLEK ; 157.9 3.27E-10 991420000 742230 831570 468520 259900 838680 894050 1132920 1106570 728600 1219480 TRUE FALSE FALSE 690203.5099 765673.3647 649943.4914 605060.3346 733484.934 783751.201 849451.4332 854628.1673 791755.6346 914114.2705 0.755051674 0.837612309 0.71100902 0.66190886 0.80239961 0.857388651 0.929261757 0.934924872 0.866145142 1 19.802015 -6.352440417 2.11309835 0.926509933 0.746358138 0.72518676 0.052516628 0.186619636 1.637689284 0.022559394 0.019507147 4.44E-07 6.352440417 -0.180151794 T(ph)SSRESLNR ddPTM_HeLa_A485_30min_R1 2 TSSRESLNR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 T(0.333)S(0.333)S(0.333)RESLNR;T(0.333)S(0.333)S(0.333)RESLNR ; 82.171 0.0032958 0 50770 55753 71770 71994 132581 61714 98768 111645 78975 129070 TRUE FALSE FALSE 62063.61135 62272.82836 98320.7096 75926.84992 119380.7701 64945.24961 77665.40994 84263.8887 94824.5581 96895.22436 0.640522913 0.642682122 1.014711615 0.783597442 1.232060413 0.670262648 0.801540122 0.869639234 0.978629842 1 16.56413794 -4.746375718 24.94923715 0.907443699 0.641602272 0.362115646 0.146545693 255.3303243 422884.5938 0.036597777 0.095998997 1.79E-05 4.746375718 -0.265841427 T(ph)SSRESLNR ddPTM_HeLa_A486_30min_R1 1 TSSRESLNR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 T(0.333)S(0.333)S(0.333)RESLNR 84.31 0.0062919 289410000 56705 56481 70640 54398 130500 87729 130200 137930 66592 71341 TRUE FALSE FALSE 52730.27232 52005.23986 97993.6998 126641.2931 114131.4731 76905.88794 97622.58288 106526.35 72364.24818 53476.74925 0.986041094 0.972483193 1.832454313 2.36815616 2.134226084 1.438118229 1.825514532 1.992012444 1.353190858 1 15.70662415 -4.760640399 24.86272005 1.806751677 0.979261809 0.383092225 0.380827648 17.19765268 535059.0962 0.097613829 0.229292585 1.74E-05 4.760640399 -0.827489868 T(ph)SSVLGMSVESAPAVEEEKGEELEQK ddPTM_HeLa_A485_30min_R1 1 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.333)S(0.333)S(0.333)VLGMSVESAPAVEEEKGEELEQK 97.047 0.0027625 43909000 24729 16303 16602 58709 33858 27155 43741 37079 20559 80908 TRUE FALSE FALSE 30229.88074 18209.49403 22743.77067 61916.12401 30486.97864 28576.79381 34395.37802 27985.31711 24685.00272 60739.1246 0.497700303 0.299798427 0.37445009 1.019377945 0.501933125 0.470484124 0.566280437 0.460746138 0.406410248 1 15.8903385 -11.09949754 2.381333489 1.83829358 0.514253316 0.387536316 0.18445277 8939891.696 2712479.207 40578658.1 0.048152088 7.95E-12 11.09949754 -1.324040264 T(ph)SSVPEYVYNLHLVENDFVGGR ddPTM_HeLa_A485_30min_R1 1 TSSVPEYVYNLHLVENDFVGGR 22 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 0 T(0.333)S(0.333)S(0.333)VPEYVYNLHLVENDFVGGR 188.8 1.30E-19 44646000 2198.5 3498.2 2635.6 3148.1 3513.7 3230.4 3433.9 3370.8 3720.5 4249 TRUE FALSE FALSE 2687.54874 3907.28406 3610.618116 3320.072732 3163.863691 3399.538749 2700.219213 2544.106015 4467.170224 3189.802497 0.842543933 1.224929776 1.13192529 1.040839593 0.991868209 1.065752112 0.846516113 0.797574777 1.400453548 1 11.63925138 -5.530812409 5.12948276 1.001570604 1.083290571 0.008398361 0.175897498 0.685489858 53.79163839 0.051150263 0.07001456 2.95E-06 5.530812409 0.081719967 T(ph)SSVPEYVYNLHLVENDFVGGR ddPTM_HeLa_A486_30min_R1 2 TSSVPEYVYNLHLVENDFVGGR 22 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 0 T(0.333)S(0.333)S(0.333)VPEYVY(0.001)NLHLVENDFVGGR;T(0.322)S(0.322)S(0.322)VPEY(0.017)VY(0.017)NLHLVENDFVGGR ; 73.934 0.0074062 93014000 21474 25665 18976.4 10611.8 26805 24415 30698 29287 21889 32415 TRUE FALSE FALSE 19968.78349 23631.21193 26324.57029 24704.80669 23442.86695 21402.92553 23017.03571 22618.98943 23786.35614 24298.07301 0.821825808 0.972554981 1.083401563 1.016739339 0.964803544 0.88084868 0.947278235 0.93089643 0.978940023 1 14.56855428 -6.005130136 24.83348435 0.940984277 0.982566534 0.021243671 0.067789718 631.8347124 3058548.825 0.022351261 0.024623126 9.88E-07 6.005130136 0.041582256 T(ph)T(ph)MPSLHIFFCTVYTLLR ddPTM_HeLa_A485_30min_R1 1 TTMPSLHIFFCTVYTLLR 18 0 H0Y539 H0Y539 SHC1 2 0 T(0.679)T(0.706)MPS(0.614)LHIFFCTVYTLLR 42.711 0.02304 230620000 41149 44633 36938 47671 58422 49598 70511 68790 40017 58477 TRUE FALSE FALSE 50302.45309 49852.44109 50602.90332 50275.14602 52605.30055 52194.87459 55445.74883 51919.14464 48048.04484 43899.76009 1.145848018 1.135597119 1.152692024 1.145225986 1.198304967 1.188955805 1.263008015 1.182674906 1.094494474 1 15.42192544 -8.005105376 3.133826296 1.000689499 1.177149137 0.714235176 0.03526554 0.136559878 3.309797089 0.03840701 0.010250159 9.88E-09 8.005105376 0.176459638 T(ph)T(ph)S(ph)WAKSK ddPTM_HeLa_A485_30min_R1 1 TTSWAKSK 8 1 F5H1N7 F5H1N7 KIAA1211 3 0 T(1)T(1)S(1)WAKS(0.001)K 61.353 0.019738 1619400000 875640 1582100 1480300 211340 1699700 1314000 1037100 1381100 1384700 329690 TRUE FALSE FALSE 1070423.097 1767112.833 2027924.57 222884.9691 1530471.9 1382799.008 815515.1127 1042383.06 1662596.589 247504.3505 4.324865785 7.139724328 8.193490605 0.9005295 6.183616154 5.586968493 3.294952638 4.211574695 6.717443897 1 17.91709436 -10.76747797 2.658866577 2.97E-39 5.152069265 0.281433304 1.999947733 78711687.12 75403601.69 522278020.4 0.509756503 1.71E-11 10.76747797 5.152069265 T(ph)T(ph)S(ph)WAKSK ddPTM_HeLa_A486_30min_R1 3 TTSWAKSK 8 1 F5H1N7 F5H1N7 KIAA1211 3 0 T(1)T(1)S(1)WAKSK;T(0.995)T(0.996)S(0.996)WAKS(0.013)K;T(1)T(1)S(1)WAKS(0.001)K ;; 58.37 0.0095011 1715900000 3767800 5016860 4859470 53050 6382400 3006300 1972580 3178230 4335020 545489 TRUE FALSE FALSE 3503696.677 4619305.743 6741186.925 123503.081 5581859.878 2635413.272 1479019.62 2454616.409 4710783.024 408895.0039 8.568695249 11.29704618 16.4863519 0.302041061 13.65108359 6.445207809 3.617113455 6.003048181 11.52076445 1 18.64137091 -6.7611163 0.156183179 1.71E-12 15.05154658 0.213753896 4.532557133 10.45236235 1.098853924 36.10077129 55.80304578 1.73E-07 6.7611163 15.05154658 T(ph)TDFSDFLSIVGCTK ddPTM_HeLa_A485_30min_R1 2 TTDFSDFLSIVGCTK 15 0 E9PIZ4;E9PSD5;E9PPQ5;Q9UHD1 E9PIZ4 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 1 0 T(0.848)T(0.152)DFSDFLSIVGCTK;T(0.904)T(0.096)DFSDFLSIVGCTK ; 285.58 4.32E-58 190023000 297820 241456 222608 336090 371500 224975 340410 291450 235411 371290 TRUE FALSE FALSE 364069.0315 269692.1788 304959.9627 354449.7457 334512.1556 236754.3431 267678.6226 219971.4305 282655.8284 278734.2361 1.306151109 0.967560292 1.094088645 1.271640508 1.200111476 0.84939097 0.960336363 0.789179807 1.014069288 1 18.08853069 -6.258514413 24.99981541 0.911777837 1.158441425 0.561948793 0.107922425 200.1951352 1711079.235 0.036373782 0.034848642 5.51E-07 6.258514413 0.246663588 T(ph)TDFSDFLSIVGCTK ddPTM_HeLa_A486_30min_R1 1 TTDFSDFLSIVGCTK 15 0 E9PIZ4;E9PSD5;E9PPQ5;Q9UHD1 E9PIZ4 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 1 0 T(0.921)T(0.079)DFSDFLSIVGCTK 218.4 8.21E-33 97462000 114710 169730 124130 101340 170850 165250 194120 176230 126820 143000 TRUE FALSE FALSE 106669.4214 156279.9767 172196.4603 235924.6414 149420.3999 144863.1351 145549.1228 136106.2761 137812.8597 107191.8692 0.99512605 1.457946184 1.606432107 2.200956501 1.393952741 1.351437718 1.357837342 1.269744404 1.285665235 1 16.70983595 -5.989460475 24.99907807 1.287056918 1.590041816 0.199300525 0.289260697 383.8720682 910513.7668 0.094590177 0.107154512 1.02E-06 5.989460475 0.302984898 T(ph)TKSPSDSGYSYETIGK ddPTM_HeLa_A486_30min_R1 2 TTKSPSDSGYSYETIGK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.415)T(0.415)KS(0.169)PS(0.001)DSGYSYETIGK;T(0.332)T(0.332)KS(0.332)PS(0.004)DSGYSYETIGK ; 174 7.23E-13 0 486610 390730 232061 319160 437930 482190 689150 682410 321440 610840 TRUE FALSE FALSE 452501.1519 359767.1318 321921.234 743020.6095 383000.7359 422702.3003 516717.3809 527040.1399 349302.678 457881.6881 0.988249069 0.785720725 0.703066409 1.622734931 0.836462226 0.923169263 1.128495405 1.151040004 0.762866669 1 18.80461534 T(ph)TPDIIKDWPR ddPTM_HeLa_A485_30min_R1 1 TTPDIIKDWPR 11 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 T(0.5)T(0.5)PDIIKDWPR 80.522 0.008097 77060000 115930 88012 67348 170250 116270 87786 126690 101580 85979 219520 TRUE FALSE FALSE 141718.2285 98304.2378 92262.82778 179550.3264 104693.7506 92382.33922 99621.64654 76667.34573 103234.1967 164797.704 0.859952688 0.596514608 0.559855056 1.089519587 0.635286464 0.560580257 0.604508705 0.465220958 0.626429824 1 17.33033662 -4.246832133 22.53534305 0.666522426 0.859953225 0.067402164 0.190941812 1766.245784 2724689.689 0.047780993 0.88869306 5.66E-05 4.246832133 0.193430799 T(ph)TPDIIKDWPR ddPTM_HeLa_A486_30min_R1 1 TTPDIIKDWPR 11 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 T(0.5)T(0.5)PDIIKDWPR 63.76 0.026656 49337000 187030 175260 75139 82198 134080 181520 226380 210270 135080 246260 TRUE FALSE FALSE 173920.1628 161371.7593 104234.8331 191361.0981 117262.4362 159125.908 169737.3296 162396.1112 146788.8432 184594.8931 0.942172126 0.874194061 0.564668022 1.036654345 0.635242038 0.862027683 0.919512597 0.87974325 0.795194497 1 17.49400312 -6.509992243 24.40562066 0.888902494 0.806578904 0.083320301 0.136350266 1281.127087 2426322.984 0.047750588 0.040167407 3.09E-07 6.509992243 -0.08232359 T(ph)TPDQELAPASEPVWERPWSVEEIR ddPTM_HeLa_A485_30min_R1 1 TTPDQELAPASEPVWERPWSVEEIR 25 1 Q641Q2;E7ESD2;Q641Q2-2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIR 71.085 0.011731 43926000 8743.7 12005 9893.3 11312 15932 10039 11310 14721 13092 14501 TRUE FALSE FALSE 10688.7059 13408.88032 13553.24336 11929.94592 14345.75414 10564.62652 8893.526106 11110.65167 15719.44431 10886.16757 0.981861232 1.231735616 1.244996761 1.095881157 1.317796557 0.970463338 0.816956569 1.02062104 1.443983313 1 13.41020853 -6.282000352 24.81282662 1.037103151 1.177190436 0.11386571 0.170942338 1626.7063 1963090.326 0.061783076 0.054548254 5.22E-07 6.282000352 0.140087285 T(ph)TPDQELAPASEPVWERPWSVEEIR ddPTM_HeLa_A486_30min_R1 4 TTPDQELAPASEPVWERPWSVEEIR 25 1 Q641Q2;E7ESD2;Q641Q2-2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIR;T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIR;T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIR;T(0.544)T(0.456)PDQELAPASEPVWERPWSVEEIR ;;; 101.49 0.0012884 261379000 22747.5 24695.5 14576.7 7523.6 28740.9 21129 19579.6 23052.7 20213.8 25215.8 TRUE FALSE FALSE 21153.01772 22738.53864 20221.18862 17515.32102 25135.94832 18522.3188 14680.57699 17804.10345 21965.94846 18901.59955 1.119112573 1.20299547 1.069813619 0.926658137 1.329831809 0.979933934 0.776684373 0.941936337 1.162121142 1 14.20622071 -6.493651679 24.73664841 0.952912839 1.122723407 0.265677629 0.129519821 821.6802999 695439.4182 0.046356079 0.040809544 3.21E-07 6.493651679 0.169810568 T(ph)TPDQELAPASEPVWERPWSVEEIRR ddPTM_HeLa_A485_30min_R1 3 TTPDQELAPASEPVWERPWSVEEIRR 26 2 Q641Q2;E7ESD2;Q641Q2-2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR;T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR;T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR ;; 145.29 5.97E-09 1475336000 178095 184986 151521 245290 263285 197560 313257 280350 158641 296859 TRUE FALSE FALSE 217711.6183 206618.5035 207574.9232 258689.5716 237071.421 207903.9361 246327.0829 211593.7229 190478.7936 222857.5146 0.976909478 0.927132764 0.931424384 1.160784603 1.063780243 0.932900721 1.10531199 0.949457429 0.85471111 1 17.76576208 -9.599163132 8.596543823 0.999993036 0.993471479 0 0.08878669 0 0 0.089338235 0.021667705 2.52E-10 9.599163132 -0.006521557 T(ph)TPDQELAPASEPVWERPWSVEEIRR ddPTM_HeLa_A486_30min_R1 3 TTPDQELAPASEPVWERPWSVEEIRR 26 2 Q641Q2;E7ESD2;Q641Q2-2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.572)T(0.428)PDQELAPASEPVWERPWSVEEIRR;T(0.549)T(0.451)PDQELAPASEPVWERPWSVEEIRR;T(0.593)T(0.407)PDQELAPASEPVWERPWSVEEIRR ;; 228.34 1.69E-38 1408978000 224347 233626 150187.8 126710.1 236538 227169 321857 315351 207557 318441 TRUE FALSE FALSE 208621.4338 215112.6249 208344.5383 294987.5164 206869.1984 199143.1985 241324.9743 243552.4614 225548.2079 238701.3009 0.873985324 0.901179106 0.872825316 1.23580188 0.866644621 0.83427781 1.01099145 1.020323142 0.944897271 1 17.8648469 T(ph)TPDQELVPASEPVWERPWSVEEIR ddPTM_HeLa_A485_30min_R1 1 TTPDQELVPASEPVWERPWSVEEIR 25 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIR 80.067 0.0076451 97904000 6292.4 4952 6324.1 5752 5780.2 5000.6 5919.6 3518.1 5425.2 8727.6 TRUE FALSE FALSE 7692.122671 5531.093323 8663.647758 6066.217195 5204.702992 5262.423684 4654.829101 2655.280459 6513.987877 6551.96994 1.174016783 0.844187836 1.322296628 0.925861573 0.794372233 0.803181903 0.710447262 0.405264445 0.994202955 1 12.67771302 -5.617171171 3.238348134 0.750254494 1.091670746 0.356540385 0.192724297 0.25135646 5.249380186 0.057792052 0.077832758 2.41E-06 5.617171171 0.341416253 T(ph)TPDQELVPASEPVWERPWSVEEIR ddPTM_HeLa_A486_30min_R1 2 TTPDQELVPASEPVWERPWSVEEIR 25 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIR;T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIR ; 156.92 1.17E-09 358530000 31807 30890 19141.3 9287.4 18819.2 24282 28074 28932 27339 35961 TRUE FALSE FALSE 29577.49355 28442.1639 26553.32398 21621.53656 16458.72045 21286.33372 21049.58826 22344.81518 29708.76653 26956.13153 1.097245483 1.055127805 0.985056923 0.80210087 0.610574274 0.789665746 0.780883126 0.828932562 1.102115357 1 14.71832585 -5.069273885 3.111835313 0.823583474 1.07201924 0.352500305 0.126093402 0.266923917 5.043424154 0.036775174 0.075083306 8.53E-06 5.069273885 0.248435766 T(ph)TPDQELVPASEPVWERPWSVEEIRR ddPTM_HeLa_A485_30min_R1 2 TTPDQELVPASEPVWERPWSVEEIRR 26 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIRR;T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIRR ; 94.75 0.0028105 416580000 115332 123536 117705 157992 198961 129065 224588 179532 116281 222720 TRUE FALSE FALSE 140987.2055 137982.4606 161248.9776 166622.7029 179151.7442 135822.6438 176602.9391 135501.4955 139617.5301 167200.0029 0.843224899 0.825253937 0.964407744 0.996547249 1.071481706 0.812336373 1.056237656 0.810415629 0.835033061 1 17.35121535 -4.757220004 24.96775338 0.94237132 0.834239374 0.187622473 0.090764042 174.3623617 1031732.938 0.023639473 0.058066713 1.75E-05 4.757220004 -0.108131946 T(ph)TPDQELVPASEPVWERPWSVEEIRR ddPTM_HeLa_A486_30min_R1 2 TTPDQELVPASEPVWERPWSVEEIRR 26 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIRR;T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIRR ; 166.2 9.18E-14 744890000 115205 124629 78074 53565 137046 140984 173728 161901 106985 174581 TRUE FALSE FALSE 107129.7244 114752.9441 108306.3437 124702.027 119856.4128 123590.8275 130259.4169 125039.6766 116258.5459 130864.7813 0.818629148 0.876881794 0.827620255 0.952907465 0.915879824 0.944416262 0.995374123 0.955487606 0.888386813 1 16.99771736 -5.265771736 24.76258392 0.948688091 0.844627536 0.68310287 0.034077722 186.7722435 1067542.194 0.009472144 0.01463181 5.42E-06 5.265771736 -0.104060555 T(ph)TPLKPSPLPVIPDTIK ddPTM_HeLa_A485_30min_R1 1 TTPLKPSPLPVIPDTIK 17 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 T(0.5)T(0.5)PLKPSPLPVIPDTIK 109.85 0.00019482 85720000 97743 65615 44407 175440 111690 90232 148780 117770 69157 261610 TRUE FALSE FALSE 119485.5931 73288.10348 60834.99723 185023.843 100569.7514 94956.40799 116991.9376 88886.72284 83036.17555 196395.4416 0.608392905 0.373166011 0.309757685 0.94209846 0.512077829 0.483495988 0.595695789 0.45259056 0.422800931 1 17.58340192 -10.36428435 3.302849664 1.003769891 0.522620905 0.429555808 0.165171397 47374677.81 64862027.36 1726874.081 0.042289043 4.32E-11 10.36428435 -0.481148986 T(ph)TPLKPSPLPVIPDTIK ddPTM_HeLa_A486_30min_R1 1 TTPLKPSPLPVIPDTIK 17 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 T(0.5)T(0.5)PLKPSPLPVIPDTIK 80.156 0.0042302 88469000 97303 86154 35394 61063 77253 103200 144910 126510 70825 148670 TRUE FALSE FALSE 90482.56217 79326.84327 49099.50468 142157.75 67563.20838 90468.23326 108651.9853 97706.43469 76964.16803 111442.0643 0.811924678 0.711821373 0.44058323 1.275620214 0.606263073 0.811796101 0.974963861 0.876746454 0.690620445 1 16.76593436 -1.000000226 0.05817449 1.218149122 2.49E-10 0.079637062 0.211371614 977.9077494 4.26828987 18.62461108 101.8720179 0.099999948 1.000000226 -1.218149122 T(ph)TPNSGDVQVTEDAVR ddPTM_HeLa_A486_30min_R1 1 TTPNSGDVQVTEDAVR 16 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 T(0.608)T(0.392)PNSGDVQVTEDAVR 200.9 1.83E-24 644430000 557520 768480 607720 174680 921900 794540 797750 854630 757490 586490 TRUE FALSE FALSE 518440.727 707582.846 843045.4593 406663.8678 806266.7056 696517.7331 598144.5123 660049.4054 823149.8431 439629.0866 1.179268485 1.609499616 1.91762894 0.925015838 1.83397034 1.584330415 1.360566283 1.501377924 1.872373481 1 18.74592731 -10.39578096 3.910396568 0.997693224 1.531896568 0.222684261 0.297937969 99358209.28 81454343.17 2182254.196 0.071209133 4.02E-11 10.39578096 0.534203344 T(ph)TPPEAAQNGQS(ph)PMAALILVADNAGGSHASK ddPTM_HeLa_A486_30min_R1 1 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 T(0.508)T(0.508)PPEAAQNGQS(0.984)PMAALILVADNAGGSHASK 50.234 0.0020651 0 8807.2 5959.7 3399 1411.4 8289.1 7531.7 7098.3 6351.9 6755.6 6352.6 TRUE FALSE FALSE 8189.86076 5487.431667 4715.183828 3285.810528 7249.403785 6602.515431 5322.230262 4905.711031 7341.180847 4761.867612 1.719884178 1.15236964 0.990196329 0.690025594 1.522386672 1.386539058 1.117677075 1.030207354 1.541660005 1 12.2173118 -5.757348487 0.013989183 1.39E-06 2.428628667 0.031310484 0.296155354 11794.50859 47.44264233 3896.472264 4338.898564 1.75E-06 5.757348487 2.428627282 T(ph)TPPEAAQNGQSPMAALILVADNAGGSHASK ddPTM_HeLa_A485_30min_R1 1 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK 137.21 1.12E-06 211170000 80109 99626 83416 62833 141580 69677 120870 83665 92043 153350 TRUE FALSE FALSE 97928.97068 111276.3941 114275.0496 66265.40769 127483.7981 73325.17998 95045.13708 63146.02757 110515.1858 115122.6672 0.850648904 0.966589784 0.992637266 0.575606953 1.107373562 0.636930865 0.82559881 0.548510811 0.959977635 1 16.8128124 -6.292449937 24.99978782 0.767947784 0.889633665 0.067426391 0.179844557 1656.666974 1335550.301 0.060050319 0.05296436 5.10E-07 6.292449937 0.121685881 T(ph)TPPEAAQNGQSPMAALILVADNAGGSHASK ddPTM_HeLa_A486_30min_R1 2 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK;T(0.5)T(0.5)PPEAAQNGQSPMAALILVADNAGGSHASK ; 112.33 9.86E-05 359120000 73033 66363 33015 5166.6 52489 60132 56614 52490 61602 35731 TRUE FALSE FALSE 67913.76384 61104.15419 45799.29217 12028.10591 45905.34018 52713.52522 42448.5784 40539.17285 66941.71096 26783.72503 2.535635494 2.281391185 1.709967233 0.449082639 1.713926652 1.968117771 1.584864628 1.513574859 2.499342824 1 14.709069 -4.743373447 3.827798963 1.548762982 2.458639032 0.313783143 0.513576032 0.2602928 8.168315534 0.138233606 0.378043243 1.81E-05 4.743373447 0.90987605 T(ph)TPPESAPQNGPSPMAALMSVADTLGTAHSPK ddPTM_HeLa_A485_30min_R1 1 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 T(0.499)T(0.499)PPES(0.001)APQNGPSPMAALMSVADTLGTAHSPK 62.706 0.011532 77783000 17980 17171 9257.3 31077 22521 13663 26942 28114 16209 35338 TRUE FALSE FALSE 21979.58897 19178.99908 12681.9605 32774.65782 20278.73016 14378.37355 21185.6216 21218.99742 19461.99762 26528.88695 0.828515309 0.722947748 0.478043445 1.235432828 0.764401846 0.541989326 0.798586901 0.799844994 0.73361531 1 14.69527653 -10.15770192 4.163456284 1.000072141 0.766217065 0.118730846 0.190390038 259608862.5 330125008.2 225717.2155 0.047605144 6.96E-11 10.15770192 -0.233855076 T(ph)TPPESAPQNGPSPMAALMSVADTLGTAHSPK ddPTM_HeLa_A486_30min_R1 1 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 T(0.497)T(0.497)PPES(0.005)APQNGPSPMAALMSVADTLGTAHSPK 112.14 9.64E-05 96076000 24230 26339 12985 14755 23374 28796 36333 31256 15444 42312 TRUE FALSE FALSE 22531.60212 24251.80172 18013.13975 34350.38568 20442.21497 25243.4423 27242.09911 24139.69111 16782.69835 31716.7998 0.710399607 0.764635836 0.567936862 1.083034414 0.644523253 0.795901303 0.858917018 0.761101097 0.529142236 1 14.95295959 -11.14736529 2.560707435 1.58753963 0.75361249 0.207014979 0.148392701 18941259.97 5421659.988 64687439.28 0.036433084 7.12E-12 11.14736529 -0.833927139 T(ph)TPTLGLEEVLSSR ddPTM_HeLa_A486_30min_R1 1 TTPTLGLEEVLSSR 14 0 O43474-4;O43474-1;O43474 O43474-4 KLF4 Krueppel-like factor 4 1 0 T(0.5)T(0.5)PTLGLEEVLSSR 81.431 0.020177 35218000 25418 24893 22033 11306 26653 26700 37878 32636 24403 34594 TRUE FALSE FALSE 23636.32946 22920.38802 30564.76766 26320.93937 23309.93221 23406.02547 28400.52377 25205.49524 26518.27169 25931.43723 0.911493229 0.883884214 1.178676191 1.015020461 0.898906297 0.902611963 1.095215954 0.972005331 1.022630233 1 14.66241455 T(ph)TPVDLCLLEESVGSLEGSR ddPTM_HeLa_A485_30min_R1 3 TTPVDLCLLEESVGSLEGSR 20 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 T(0.5)T(0.5)PVDLCLLEESVGSLEGSR;T(0.5)T(0.5)PVDLCLLEESVGSLEGSR;T(0.5)T(0.5)PVDLCLLEESVGSLEGSR ;; 188.04 1.84E-18 207933000 38668.1 34067 39561 56083 64917 39044.8 57150 51185 35165.4 82970 TRUE FALSE FALSE 47269.68544 38050.83931 54196.26017 59146.67228 58453.63554 41089.12535 44939.43563 38631.7985 42222.77322 62287.10595 0.758900012 0.610894321 0.870104002 0.94958132 0.938454832 0.659673053 0.72148858 0.620221439 0.677873415 1 15.92664592 -6.284164496 24.83054605 0.711217468 0.823021304 0.08828603 0.132747243 1573.351001 1719112.398 0.048450566 0.042757972 5.20E-07 6.284164496 0.111803835 T(ph)TPVDLCLLEESVGSLEGSR ddPTM_HeLa_A486_30min_R1 1 TTPVDLCLLEESVGSLEGSR 20 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 T(0.5)T(0.5)PVDLCLLEESVGSLEGSR 116.29 7.14E-05 96051000 2879.7 5873.6 4635.4 2046.3 4308.5 4376.8 5326.3 5793.7 4379.6 4741.5 TRUE FALSE FALSE 2677.847901 5408.154545 6430.35102 4763.889814 3768.087755 3836.834916 3993.603404 4474.600986 4759.227254 3554.197538 0.75343249 1.521624639 1.809227245 1.340355949 1.060179609 1.079522135 1.123630119 1.258962378 1.339044103 1 11.79530815 -5.61439463 6.342344451 1.15380472 1.408688204 0.128197699 0.262144821 0.399279643 22.82929401 0.080168109 0.103846394 2.43E-06 5.61439463 0.254883484 T(ph)TPYYKR ddPTM_HeLa_A486_30min_R1 1 TTPYYKR 7 1 Q9NW64;Q9NW64-2;E5RJW4 Q9NW64 RBM22 Pre-mRNA-splicing factor RBM22 1 0 T(0.5)T(0.5)PYYKR 79.474 0.0062336 0 189910 194840 156660 63226 248800 177190 238300 225400 146550 208030 TRUE FALSE FALSE 176598.2897 179400.1688 217322.9475 147193.3233 217593.184 155330.0993 178674.8195 174081.3404 159253.072 155937.934 1.132490891 1.150458803 1.393650294 0.943922492 1.395383269 0.996102073 1.145807277 1.116350179 1.021259343 1 17.2506124 -7.275495342 0.627274507 0.999188034 1.195452863 0.186319243 0.134424511 1.249901577 1.010792843 0.121496738 0.065379322 5.30E-08 7.275495342 0.196264829 T(ph)TRTPDTSTYCYETAEK ddPTM_HeLa_A485_30min_R1 3 TTRTPDTSTYCYETAEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.418)T(0.418)RT(0.163)PDTSTYCYETAEK;T(0.332)T(0.332)RT(0.332)PDT(0.001)S(0.001)T(0.001)YCYETAEK;T(0.362)T(0.362)RT(0.275)PDTSTYCYETAEK ;; 211.75 1.45E-25 2700520000 659870 762090 592530 1074780 1415400 923360 1484060 1792010 768180 1554580 TRUE FALSE FALSE 806655.805 851209.7962 811731.5042 1133492.51 1274477.806 971705.7018 1166978.457 1352516.738 922346.6798 1167051.816 0.69119108 0.729367612 0.695540244 0.971244374 1.092049032 0.832615732 0.999937142 1.15891747 0.790321961 1 20.15443719 -5.271828693 8.031848091 0.984366362 0.707480049 0.598824121 0.102115228 0.099152613 51.9835676 0.027732568 0.043279331 5.35E-06 5.271828693 -0.276886312 T(ph)TRTPEEGGYSYDISEK ddPTM_HeLa_A485_30min_R1 1 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.333)T(0.333)RT(0.333)PEEGGYSYDISEK 104.06 0.00028567 2007300000 1109500 1226200 1165400 1319500 2026500 1276400 2061200 2057200 1286200 2028500 TRUE FALSE FALSE 1356304.447 1369593.423 1596529.956 1391580.944 1824734.545 1343230.33 1620807.782 1552668.474 1544328.542 1522832.282 0.890645978 0.899372465 1.048395135 0.913811035 1.198250501 0.882060583 1.064337682 1.019592566 1.014115974 1 20.53832563 -4.750812517 23.88651226 1.017847955 0.895009054 0.269105561 0.080792943 150.3950372 338038.0815 0.019140184 0.04940837 1.77E-05 4.750812517 -0.122838901 T(ph)TRTPEEGGYSYDISEK ddPTM_HeLa_A486_30min_R1 1 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.354)T(0.354)RT(0.293)PEEGGYSYDISEK 82.475 0.0030593 1348800000 648990 633640 569500 310850 758700 663590 831250 835310 640510 718210 TRUE FALSE FALSE 603499.1524 583428.0587 790025.6517 723674.5095 663536.7714 581723.0127 623262.4579 645128.1477 696029.9225 538365.5412 1.12098399 1.083702455 1.467452114 1.344206592 1.232502307 1.080535376 1.157693816 1.198308767 1.29285749 1 19.03822655 -6.017474224 23.58880555 1.158734792 1.26105618 0.148123864 0.12306738 800.6452595 1080807.573 0.042665802 0.043651268 9.61E-07 6.017474224 0.102321389 T(ph)TSFFLNSPEKEHQEMDEGSQSLEK ddPTM_HeLa_A486_30min_R1 1 TTSFFLNSPEKEHQEMDEGSQSLEK 25 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 T(0.283)T(0.283)S(0.283)FFLNS(0.151)PEKEHQEMDEGSQSLEK 109.08 0.00042309 486290000 178480 141520 70545 95758 117450 185510 255500 204110 118720 288660 TRUE FALSE FALSE 165969.4737 130305.4398 97861.91326 222929.4633 102718.3258 162623.6623 191571.1976 157638.6087 129010.7452 216377.6571 0.767036097 0.602213008 0.452273652 1.030279495 0.474717802 0.751573265 0.885355725 0.728534594 0.596229513 1 17.72319201 -14 0.2142116 2.441150059 0.66020812 0.214601529 0.169441776 233.5675186 2.333244236 145.3308604 0.340952945 1.00E-14 14 -1.780941939 T(ph)TSGDDACNLTSFRPATLTVTNFFK ddPTM_HeLa_A486_30min_R1 1 TTSGDDACNLTSFRPATLTVTNFFK 25 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0U1RQT6 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 T(0.333)T(0.333)S(0.333)GDDACNLTSFRPATLTVTNFFK 74.838 0.010024 428380000 56916 53095 29939 25508 53518 53085 74223 67829 43481 66444 TRUE FALSE FALSE 52926.48231 48887.55883 41532.18259 59383.9131 46805.2734 46535.91243 55651.62035 52385.8174 47249.96809 49805.98992 1.062652954 0.981559827 0.833879272 1.192304644 0.939751895 0.93434369 1.11736802 1.051797534 0.948680433 1 15.60403164 -6.735236872 24.99982267 1.033778145 0.990044239 0.036856447 0.095899544 835.6388061 797282.0947 0.036618057 0.028356509 1.84E-07 6.735236872 -0.043733906 T(ph)TSPEPR ddPTM_HeLa_A485_30min_R1 1 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 T(0.717)T(0.142)S(0.142)PEPR 86.953 0.036356 1117600000 505690 655340 351490 675700 426830 559310 648820 882920 569890 854310 TRUE FALSE FALSE 618178.9959 731976.3123 481520.7777 712611.78 384333.3065 588594.6067 510194.3066 666382.4856 684261.6957 641346.2394 0.963877166 1.141312239 0.750796915 1.111118669 0.599260248 0.91774859 0.79550526 1.03903702 1.066914645 1 19.2907439 -9.658197899 8.576473532 1.00000555 0.926808565 0.014558793 0.164064531 0 0 0.155786408 0.037783754 2.20E-10 9.658197899 -0.073196985 T(ph)TSPEPR ddPTM_HeLa_A486_30min_R1 2 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 T(0.729)T(0.136)S(0.136)PEPR;T(0.803)T(0.119)S(0.078)PEPR ; 96.253 0.026147 1221410000 2102030 1054880 1516140 687000 1189570 2581680 1594610 1392290 2266710 2406340 TRUE FALSE FALSE 1954688.552 971287.467 2103230.012 1599370.719 1040363.038 2263178.57 1195621.712 1075295.96 2463190.248 1803776.801 1.083664315 0.538474309 1.166014559 0.886678838 0.576769275 1.254688811 0.662843491 0.596135819 1.365573748 1 20.7825894 -7.768458309 24.99999887 1.182786812 0.846042581 0.216670335 0.256404614 264.1319575 940743.2095 0.217920735 0.061084302 1.70E-08 7.768458309 -0.336744231 T(ph)TSPGGRPSAR ddPTM_HeLa_A485_30min_R1 2 TTSPGGRPSAR 11 1 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 T(0.634)T(0.056)S(0.224)PGGRPS(0.086)AR;T(0.333)T(0.333)S(0.333)PGGRPSAR ; 98.942 0.0018288 1118160000 728180 931620 801580 843560 1140670 817680 1124510 1137870 819680 1133990 TRUE FALSE FALSE 890161.1288 1040564.855 1098117.799 889641.5468 1027100.89 860492.4604 884249.2521 858805.5984 984182.2574 851307.1625 1.045640361 1.222314225 1.289919605 1.045030027 1.206498588 1.01078964 1.038695891 1.008808144 1.15608361 1 19.69932024 -6.263784008 24.98889461 1.043164741 1.165859572 0.348140786 0.081329178 241.948423 2578662.561 0.027751986 0.025646633 5.45E-07 6.263784008 0.122694831 T(ph)TSPGGRPSAR ddPTM_HeLa_A486_30min_R1 1 TTSPGGRPSAR 11 1 A1L390-3;A1L390;A1L390-2;G3V311 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 T(0.535)T(0.314)S(0.105)PGGRPS(0.046)AR 74.611 0.0238 105200000 142320 140870 101290 49500 146400 127010 150990 150760 112190 143190 TRUE FALSE FALSE 132344.1029 129706.9482 140512.2006 115238.5016 128037.1469 111340.7975 113210.705 116435.2391 121914.7195 107334.292 1.23300858 1.208439034 1.309108189 1.073641047 1.192882018 1.037327358 1.0547487 1.084790675 1.135841279 1 16.71175155 -5.572818832 1.344089896 1.072643853 1.245589799 0.594066962 0.060145064 0.304259715 1.127858944 0.02139869 0.036641951 2.67E-06 5.572818832 0.172945946 T(ph)TSPPEVSGYSYEK ddPTM_HeLa_A485_30min_R1 1 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.333)T(0.333)S(0.333)PPEVSGYSYEK 104.7 0.0018449 1325300000 572300 590100 461410 731690 826380 623640 893000 936500 626480 1046500 TRUE FALSE FALSE 699606.1606 659107.0618 632104.7599 771660.372 744102.7056 656292.8261 702203.2549 706821.9066 752208.7896 785626.8094 0.890506984 0.838956937 0.804586545 0.982222555 0.947145256 0.835374784 0.893812745 0.899691683 0.957463239 1 19.58348464 -14 0.086871382 1.37051375 0.794213251 0.355366999 0.050251275 273.6807325 1.658975726 18.71998328 1.432306852 1.00E-14 14 -0.576300498 T(ph)TSPPEVSGYSYEK ddPTM_HeLa_A486_30min_R1 2 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.333)T(0.333)S(0.333)PPEVSGYSYEK;T(0.472)T(0.472)S(0.056)PPEVSGYSYEK ; 127.36 0.00012257 11634040000 3056900 3125200 1793300 1248740 3159300 3219700 3991200 3902700 2708800 3809000 TRUE FALSE FALSE 2842627.096 2877547.77 2487713.786 2907129.828 2763031.135 2822486.15 2992559.545 3014140.405 2943600.965 2855201.608 0.995595929 1.007826475 0.871291813 1.018187234 0.967718401 0.988541805 1.048107965 1.055666401 1.030960811 1 21.44516119 -6.643010102 4.210508973 1.038200212 0.971615318 0.342883048 0.040121049 0.241655866 7.658130109 0.015987197 0.012078501 2.28E-07 6.643010102 -0.066584893 T(ph)TSPPLSIPTTHLIHQPAGSR ddPTM_HeLa_A485_30min_R1 3 TTSPPLSIPTTHLIHQPAGSR 21 0 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR;T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR;T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR ;; 168.55 2.16E-13 2124900000 155113 190542 167492 164125 228749 151976 203983 249473 122005 203449 TRUE FALSE FALSE 189617.3517 212824.2294 229454.2607 173090.7332 205973.9464 159933.2284 160400.3657 188289.3556 146490.2844 152732.9085 1.241496372 1.393440559 1.502323651 1.133290362 1.34858917 1.047143212 1.050201736 1.23280148 0.959127184 1 17.22065142 -6.032674123 1.203556612 1.063734518 1.36300993 0.551400523 0.116227075 0.359023439 1.087404902 0.052295851 0.058094026 9.28E-07 6.032674123 0.299275412 T(ph)TSPPLSIPTTHLIHQPAGSR ddPTM_HeLa_A486_30min_R1 4 TTSPPLSIPTTHLIHQPAGSR 21 0 Q5T5U3;E7ESW5;A0A1B0GV73;A0A087WW76;A0A452Q6Z5;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 T(0.363)T(0.363)S(0.274)PPLSIPTTHLIHQPAGSR;T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR;T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR;T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR ;;; 201.15 3.52E-26 4106210000 310575 292041 188785 62476.1 332097 261656 309624 299873 259225 293903 TRUE FALSE FALSE 288805.2963 268898.6076 261887.6078 145447.5182 290442.2976 229375.543 232152.8003 231598.4641 281694.8317 220307.7758 1.310917398 1.220558859 1.1887352 0.660201473 1.318347918 1.041159542 1.053765803 1.051249613 1.278642257 1 17.74916089 -5.013136534 24.65598841 1.058598447 1.25046547 0.205923855 0.168218105 812.2984703 1524614.475 0.044057712 0.08123716 9.70E-06 5.013136534 0.191867022 T(ph)TTPSRYPQHTR ddPTM_HeLa_A485_30min_R1 2 TTTPSRYPQHTR 12 1 A0A0D9SGF3;D8L7E9;A0A0D9SFD0;A0A0R4J2G5;A0A1B0GV32;A0A0D9SGI5;Q06413-4;Q06413-3;Q06413-6;Q06413-2;Q06413;Q06413-5 A0A0D9SGF3 MEF2C Myocyte-specific enhancer factor 2C 1 0 T(0.333)T(0.333)T(0.333)PS(0.001)RYPQHTR;T(0.333)T(0.333)T(0.333)PS(0.002)RYPQHTR ; 70.281 0.013555 188629000 92498 135649 113970 80689 133872 111894 129734 142431 93134 116296 TRUE FALSE FALSE 113073.861 151511.9706 156132.2457 85096.83575 120543.2336 117752.5968 102015.2711 107499.5739 111825.1395 87305.54747 1.29515093 1.735422032 1.788342782 0.974701359 1.380705317 1.348741291 1.168485555 1.231302902 1.280848042 1 16.41378571 -5.415346345 0.254275886 1.026845421 1.806506049 0.323952818 0.209792935 6.501401358 0.59519691 0.351499261 1.574160502 3.84E-06 5.415346345 0.779660629 T(ph)TTPSRYPQHTR ddPTM_HeLa_A486_30min_R1 1 TTTPSRYPQHTR 12 1 A0A0D9SGF3;D8L7E9;A0A0D9SFD0;A0A0R4J2G5;A0A1B0GV32;A0A0D9SGI5;Q06413-4;Q06413-3;Q06413-6;Q06413-2;Q06413;Q06413-5 A0A0D9SGF3 MEF2C Myocyte-specific enhancer factor 2C 1 0 T(0.333)T(0.333)T(0.333)PS(0.002)RYPQHTR 67.136 0.017126 104760000 94093 90500 72414 25823 104530 84770 93717 89943 77910 96907 TRUE FALSE FALSE 87497.5666 83328.4504 100454.6401 60117.24902 91418.8727 74311.93928 70268.01536 69464.94234 84663.30153 72640.85644 1.204522784 1.147129239 1.38289449 0.827595543 1.258504885 1.023004724 0.967334621 0.956279231 1.165505277 1 16.14849359 -5.251176181 24.99498041 1.033324842 1.235076862 0.391168168 0.123502421 758.8980848 1848216.323 0.032496956 0.055511963 5.61E-06 5.251176181 0.20175202 T(ph)VHRDSEEEDDYLFDDPLPIPLR ddPTM_HeLa_A485_30min_R1 4 TVHRDSEEEDDYLFDDPLPIPLR 23 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 0 T(0.481)VHRDS(0.481)EEEDDY(0.037)LFDDPLPIPLR;T(0.499)VHRDS(0.499)EEEDDY(0.001)LFDDPLPIPLR;T(0.495)VHRDS(0.495)EEEDDY(0.009)LFDDPLPIPLR;T(0.481)VHRDS(0.481)EEEDDY(0.039)LFDDPLPIPLR ;;; 114.37 0.00015051 290888000 167332 214851 215805 177906 267223 216878 260439 291311 196267 231149 TRUE FALSE FALSE 204554.4261 239975.9555 295640.2499 187624.5543 240617.3398 228233.3967 204794.0801 219866.5205 235655.9866 173527.8083 1.178799111 1.382925065 1.703705319 1.081236236 1.386621212 1.315255457 1.18018018 1.267039114 1.358030099 1 17.40480735 -13.34473743 0.177573296 2.76E-09 1.392959839 0.263979822 0.159768497 140.296968 1.659676164 50.16287341 0.530215135 4.52E-14 13.34473743 1.392959836 T(ph)VHRDSEEEDDYLFDDPLPIPLR ddPTM_HeLa_A486_30min_R1 5 TVHRDSEEEDDYLFDDPLPIPLR 23 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 0 T(0.573)VHRDS(0.427)EEEDDYLFDDPLPIPLR;T(0.344)VHRDS(0.344)EEEDDY(0.311)LFDDPLPIPLR;T(0.479)VHRDS(0.479)EEEDDY(0.043)LFDDPLPIPLR;T(0.48)VHRDS(0.48)EEEDDY(0.041)LFDDPLPIPLR;T(0.451)VHRDS(0.451)EEEDDY(0.099)LFDDPLPIPLR ;;;; 123.14 5.00E-06 337339000 186347.3 205471.2 172727.1 77260.5 250325 189591.2 205167.1 217648.9 188375.3 205690.6 TRUE FALSE FALSE 173285.3166 189188.9138 239611.6589 179866.3485 218926.9043 166201.3654 153832.1215 168094.9967 204703.8227 154184.3349 1.123884061 1.227030709 1.554059685 1.166566945 1.419903678 1.077939373 0.997715634 1.09022098 1.327656423 1 17.23429667 -6.280043862 24.73330233 1.098033346 1.301221811 0.325818139 0.143514131 887.9411542 1180448.988 0.050678827 0.044776867 5.25E-07 6.280043862 0.203188465 T(ph)VLSLFDEEEDKMEDQNIIQAPQK ddPTM_HeLa_A486_30min_R1 1 TVLSLFDEEEDKMEDQNIIQAPQK 24 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;B1AP61;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 T(0.5)VLS(0.5)LFDEEEDKMEDQNIIQAPQK 92.95 0.0025569 6761700 40854 32931 14048 27577 30327 43791 51763 48633 26486 76822 TRUE FALSE FALSE 37990.34557 30321.42763 19487.76182 64200.64966 26523.10487 38388.51165 38811.34991 37560.32755 28781.82781 57585.27117 0.659723308 0.526548317 0.338415734 1.114879697 0.460588347 0.666637681 0.673980501 0.652255808 0.499812317 1 15.81341223 -10.62825568 2.907353945 1.03115266 0.623877389 0.253075 0.195071541 89556723.96 90494354.98 21135488.01 0.046994148 2.35E-11 10.62825568 -0.407275272 T(ph)VMGRCHYPR ddPTM_HeLa_A486_30min_R1 1 TVMGRCHYPR 10 1 Q8NGX9 Q8NGX9 OR6P1 Olfactory receptor 6P1 1 0 T(1)VMGRCHYPR 62.408 0.028353 195720000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)VSPPTVCTIPTVVGR ddPTM_HeLa_A486_30min_R1 1 TVSPPTVCTIPTVVGR 16 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 T(0.908)VS(0.089)PPT(0.003)VCTIPTVVGR 138.73 1.89E-05 99121000 109570 118830 69452 49784 102390 110190 131570 127930 80890 150050 TRUE FALSE FALSE 101889.7088 109413.478 96345.67439 115899.6679 89547.29145 96595.87813 98649.79439 98803.13169 87901.61033 112476.5033 0.905875501 0.972767421 0.8565849 1.030434486 0.796142206 0.858809398 0.877070245 0.878433528 0.781510873 1 16.77926412 -5.775233527 24.99986313 0.859510613 0.937595687 0.221453062 0.069230581 333.143366 603771.0108 0.020039476 0.022839327 1.68E-06 5.775233527 0.078085074 T(ph)WSRDEVMGDNLLLSSVFQFSK ddPTM_HeLa_A485_30min_R1 1 TWSRDEVMGDNLLLSSVFQFSK 22 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4;E7EWM2;E7EMW0;Q96L14;E5RG47 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 0 T(0.5)WS(0.5)RDEVMGDNLLLSSVFQFSK 107.83 0.0032642 12309000 9285.3 6759.7 8621.5 14247 16462 10592 17163 15710 10537 23703 TRUE FALSE FALSE 11350.78295 7550.188113 11810.95162 15025.27753 14822.98548 11146.58074 13495.98484 11857.09787 12651.67925 17794.27832 0.63788948 0.424304261 0.663749965 0.844388138 0.833019761 0.626413757 0.758445192 0.666343285 0.710997042 1 14.1191258 -14 0.043107633 2.208020872 2.74E-11 0.449268876 0.109336609 782.0518844 2.505330631 120.8195806 33.06626895 1.00E-14 14 -2.208020872 T(ph)Y(ph)DEKKTY(ph)DQQK ddPTM_HeLa_A485_30min_R1 1 TYDEKKTYDQQK 12 2 Q96T21-2;Q96T21-3;Q96T21 Q96T21-2 SECISBP2 Selenocysteine insertion sequence-binding protein 2 3 0 T(0.72)Y(0.78)DEKKT(0.72)Y(0.78)DQQK 57.267 0.01211 90401000 67345 38632 21321 128780 40152 86607 92663 91552 37674 123060 TRUE FALSE FALSE 82325.66291 43149.67635 29208.52514 135814.9253 36154.3259 91141.6086 72864.79306 69098.72845 45234.82623 92383.40675 0.891130408 0.467071716 0.316166357 1.470122505 0.391350862 0.986558212 0.788721651 0.747956055 0.489642327 1 16.49534613 T(ph)Y(ph)HPADKDYGLMK ddPTM_HeLa_A485_30min_R1 2 TYHPADKDYGLMK 13 1 H7C416 H7C416 PPP1R2 2 0 T(1)Y(1)HPADKDYGLMK;T(1)Y(1)HPADKDYGLMK ; 50.207 0.029232 1316990000 857760 478550 657280 1847060 1630690 732870 1471770 1175690 852130 2413200 TRUE FALSE FALSE 1048565.753 534512.2597 900435.2237 1947960.211 1468332.778 771241.94 1157314.316 887350.1841 1023144.675 1811633.652 0.578795692 0.295044343 0.49702942 1.075250622 0.810502044 0.425716281 0.638823592 0.489806636 0.564763562 1 20.78885981 -11.23611157 2.155773993 2.295522524 0.598804977 0.258108383 0.204803789 9587743.68 1560935.33 60561244.89 0.058675567 5.81E-12 11.23611157 -1.696717548 T(ph)Y(ph)HPADKDYGLMK ddPTM_HeLa_A486_30min_R1 1 TYHPADKDYGLMK 13 1 H7C416 H7C416 PPP1R2 2 0 T(1)Y(1)HPADKDYGLMK 59.57 0.017008 726280000 197340 448820 284570 242240 563200 571900 747420 743830 338720 401820 TRUE FALSE FALSE 183507.4851 413253.8686 394763.125 563946.9621 492558.2044 501344.7927 560407.6106 574476.1467 368080.5223 301201.6566 0.609251248 1.37201725 1.310627337 1.872323574 1.635310409 1.664482189 1.860572803 1.907280834 1.222040166 1 18.20037018 -4.13890299 1.326755137 1.636681778 1.03E-10 0.487464588 0.288416631 1.350635008 1.71544622 0.080121924 3.213701155 7.26E-05 4.13890299 -1.636681778 T(ph)Y(ph)KY(ph)DTEK ddPTM_HeLa_A485_30min_R1 1 TYKYDTEK 8 1 O60882 O60882 MMP20 Matrix metalloproteinase-20 3 0 T(0.651)Y(0.849)KY(0.849)DT(0.651)EK 55.567 0.0046935 0 601710 330550 205080 1575600 458350 330860 680710 448970 327070 1647700 TRUE FALSE FALSE 735558.3136 369204.9471 280947.6261 1661671.038 412715.0646 348183.318 535270.7476 338859.4035 392709.9489 1236958.714 0.594650659 0.298477987 0.227127731 1.343352062 0.333653064 0.281483379 0.432731296 0.273945605 0.31748024 1 20.23836592 -10.23073066 3.684660309 1.000768521 0.455866976 0.213413144 0.313386509 207320244.6 336744228.3 1875569.332 0.082502227 5.88E-11 10.23073066 -0.544901544 T(ph)Y(ph)KY(ph)DTEK ddPTM_HeLa_A486_30min_R1 1 TYKYDTEK 8 1 O60882 O60882 MMP20 Matrix metalloproteinase-20 3 0 T(0.632)Y(0.868)KY(0.868)DT(0.632)EK 62.823 0.01997 514890000 390020 714280 204860 573730 412820 917060 1148400 867980 474640 1395100 TRUE FALSE FALSE 362681.6121 657677.8514 284187.2783 1335672.435 361040.2662 803922.4612 861058.1735 670359.9019 515782.1774 1045757.879 0.34681222 0.62890069 0.271752462 1.277229138 0.345242693 0.768746262 0.823381961 0.641027828 0.493213762 1 19.99611744 T(ph)Y(ph)T(ph)WLK ddPTM_HeLa_A485_30min_R1 2 TYTWLK 6 0 Q6YHK3-2;Q6YHK3-4;Q6YHK3 Q6YHK3-2 CD109 CD109 antigen 3 0 T(1)Y(1)T(1)WLK;T(1)Y(1)T(1)WLK ; 88.942 0.0061337 1785880000 0 0 0 0 9328.6 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 8399.811829 0 0 0 0 0 0 T(ph)Y(ph)T(ph)WLK ddPTM_HeLa_A486_30min_R1 2 TYTWLK 6 0 Q6YHK3-2;Q6YHK3-4;Q6YHK3 Q6YHK3-2 CD109 CD109 antigen 3 0 T(1)Y(1)T(1)WLK;T(1)Y(1)T(1)WLK ; 77.674 0.008764 1150730000 5061.8 5840 8466.4 0 0 4209 0 6379.7 0 9876 TRUE FALSE FALSE 4706.993959 5377.217131 11744.81682 0 0 3689.736374 0 4927.181578 0 7402.985318 0.63582376 0.726357935 1.586497381 0 0 0.498411953 0 0.665566844 0 1 12.85389145 -5.281430488 24.89891514 0.277329796 0.957239637 0.373756123 0.397754334 748.1165912 931777.1481 0.107550844 0.159759362 5.23E-06 5.281430488 0.679909841 T(ph)YSAPAINAIQGGSFESPKK ddPTM_HeLa_A485_30min_R1 1 TYSAPAINAIQGGSFESPKK 20 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 T(0.5)YS(0.5)APAINAIQGGSFESPKK 122.04 2.27E-06 446610000 127930 85966 48629 114510 120590 106790 190080 245280 83051 243000 TRUE FALSE FALSE 156387.5871 96018.9759 66618.89072 120765.3913 108583.6362 112381.3593 149467.8552 185124.6954 99718.57391 182424.5721 0.8572726 0.526348917 0.36518595 0.66200178 0.595224837 0.616042883 0.819340583 1.014801314 0.546629069 1 17.47694054 -6.76268574 4.309401942 0.850528745 0.589275703 0.339157255 0.16527017 0.231176374 10.10400414 0.06810885 0.048023684 1.73E-07 6.76268574 -0.261253042 T(ph)YSDTDSCSDIPLEDPDRPVHCSK ddPTM_HeLa_A485_30min_R1 1 TYSDTDSCSDIPLEDPDRPVHCSK 24 1 Q9HB20 Q9HB20 PLEKHA3 Pleckstrin homology domain-containing family A member 3 1 0 T(0.554)YS(0.441)DT(0.005)DSCSDIPLEDPDRPVHCSK 176.85 6.94E-15 139050000 104780 154790 174230 52918 322860 115740 162760 158020 173250 120860 TRUE FALSE FALSE 128087.9495 172891.344 238684.9273 55808.77634 290714.9248 121799.9674 127984.9964 119265.3472 208019.6859 90731.82626 1.411720173 1.905520379 2.630663761 0.615095922 3.204111906 1.342417236 1.410585476 1.314481943 2.29268708 1 16.46932108 -11.30310707 0.268787314 3.94E-13 1.873642304 0.092560795 0.714812515 96.01952138 3.384499554 59.57371168 0.909636848 4.98E-12 11.30310707 1.873642304 T(ph)YSDTDSCSDIPLEDPDRPVHCSK ddPTM_HeLa_A486_30min_R1 2 TYSDTDSCSDIPLEDPDRPVHCSK 24 1 Q9HB20 Q9HB20 PLEKHA3 Pleckstrin homology domain-containing family A member 3 1 0 T(0.317)Y(0.28)S(0.317)DT(0.076)DS(0.009)CS(0.002)DIPLEDPDRPVHCSK;T(0.529)Y(0.002)S(0.43)DT(0.039)DSCSDIPLEDPDRPVHCSK ; 153.97 1.56E-09 317880000 324774 476060 367440 129096 562050 371650 493320 481120 477880 300905 TRUE FALSE FALSE 302009.0197 438335.2718 509722.6084 300542.0122 491552.4481 325799.6017 369886.1182 371579.4788 519303.0232 225556.4294 1.338951058 1.943350819 2.259845173 1.332447108 2.179288125 1.444426135 1.63988284 1.647390321 2.302319754 1 17.78312888 -6.32283353 24.99992419 1.649333456 1.816523893 0.05291697 0.411913667 970.9227059 395360.0157 0.14034687 0.123774329 4.76E-07 6.32283353 0.167190437 T(ph)YSSGSSGGSHPSSR ddPTM_HeLa_A485_30min_R1 1 TYSSGSSGGSHPSSR 15 0 H7C3Q7 H7C3Q7 ABI2 1 0 T(0.324)YS(0.324)S(0.324)GS(0.025)S(0.002)GGSHPSSR 66.977 0.005011 0 8812.2 22695 26916 9260.1 23460 16049 14233 17035 20318 10474 TRUE FALSE FALSE 10772.44349 25348.98283 36873.34847 9765.955815 21124.24003 16889.30082 11192.00328 12857.13954 24395.63623 7863.02456 1.370012698 3.223820889 4.689461185 1.242010087 2.686528557 2.147939472 1.423371273 1.635139181 3.102576629 1 12.94086865 -5.295799914 24.99977209 1.941903147 3.107372559 0.246893671 0.960160386 869.7326908 632791.5334 0.269683782 0.400025613 5.06E-06 5.295799914 1.165469412 T(ph)YSSGSSGGSHPSSR ddPTM_HeLa_A486_30min_R1 1 TYSSGSSGGSHPSSR 15 0 H7C3Q7 H7C3Q7 ABI2 1 0 T(0.511)YS(0.42)S(0.06)GS(0.009)SGGSHPSSR 146.76 9.28E-08 55819000 24795 32630 32826 418.26 39317 18384 21340 20268 32219 4404.7 TRUE FALSE FALSE 23056.99854 30044.27996 45537.10631 973.7304177 34385.49524 16115.96899 16000.50629 15653.41885 35011.76886 3301.73445 6.983298896 9.099544623 13.79187424 0.294914819 10.41437334 4.881061526 4.846091207 4.740968447 10.60405353 1 11.68900838 -5.24983601 24.99930547 5.592786643 9.872369224 0.269646491 3.515933172 1077.570747 2321608.243 0.913345692 1.565170326 5.63E-06 5.24983601 4.279582581 T(ph)YSSSGSSGGSHPSSR ddPTM_HeLa_A485_30min_R1 2 TYSSSGSSGGSHPSSR 16 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9 H0Y6B5 ABI2 Abl interactor 2 1 0 T(0.487)YS(0.487)S(0.011)S(0.014)GSSGGSHPSSR;T(0.381)YS(0.381)S(0.108)S(0.128)GS(0.001)SGGSHPSSR ; 109.72 0.00025781 43496000 39661 38974 36779 47672 48558 45372 47496 50213 37545 54042 TRUE FALSE FALSE 48483.45262 43531.67027 50385.0826 50276.20065 43723.39502 47747.60776 37348.09159 37898.18302 45079.93712 40570.32397 1.195047214 1.072992917 1.241919651 1.239235868 1.077718656 1.176909699 0.920576617 0.934135578 1.111155463 1 15.3081372 -6.750631942 24.97923054 0.985978213 1.165606353 0.590462092 0.071674301 146.9359196 339613.4745 0.027874499 0.021370969 1.78E-07 6.750631942 0.17962814 T(ph)YTHEVVTLWYR ddPTM_HeLa_A486_30min_R1 1 TYTHEVVTLWYR 12 0 G3V5T9;P24941;Q00526;K7EJ83 G3V5T9 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 T(0.958)YT(0.032)HEVVT(0.01)LWYR 108.5 0.0023017 180640000 130950 131350 79301 79495 124320 143970 176550 183040 117520 222180 TRUE FALSE FALSE 121771.0812 120941.3476 110008.471 185068.3775 108726.6264 126208.4452 132375.3226 141365.7877 127706.7282 166544.6819 0.731161631 0.726179583 0.660534277 1.111223579 0.652837576 0.757805316 0.794833682 0.848815982 0.766801598 1 17.34554976 -14 0.207904066 2.009741567 0.754340615 0.225300229 0.122339252 229.4905872 2.284864397 96.60238675 0.267768683 1.00E-14 14 -1.255400953 TAADVVS(ph)PGANSVDSR ddPTM_HeLa_A485_30min_R1 2 TAADVVSPGANSVDSR 16 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 TAADVVS(1)PGANSVDSR;TAADVVS(0.999)PGANS(0.001)VDSR ; 187.75 7.03E-18 1175310000 498250 588200 552910 560920 857010 598560 782810 871240 559170 825170 TRUE FALSE FALSE 609083.9936 656984.8733 757454.4175 591561.6393 771683.0753 629899.6761 615556.2485 657567.0239 671390.29 619470.3051 0.98323356 1.060559107 1.222745322 0.954947532 1.245714393 1.01683595 0.993681607 1.061498862 1.083813517 1 19.2406756 TAADVVS(ph)PGANSVDSR ddPTM_HeLa_A486_30min_R1 2 TAADVVSPGANSVDSR 16 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 TAADVVS(0.98)PGANS(0.019)VDS(0.001)R;TAADVVS(1)PGANSVDSR ; 181.86 1.15E-17 1165830000 738480 849470 670290 277773 975450 719940 943970 1001390 603320 862150 TRUE FALSE FALSE 686716.3655 782154.9035 929844.239 646669.5819 853099.9653 631121.1226 707778.7217 773395.3572 655616.2634 646262.0283 1.062597422 1.210275197 1.438803764 1.000630632 1.320052746 0.976571568 1.095188469 1.196721025 1.014474369 1 19.3017597 -6.265821918 24.99805448 1.071298491 1.208154937 0.251863734 0.127892544 611.8875091 3490201.366 0.043615301 0.039734396 5.42E-07 6.265821918 0.136856446 TAAFVLAMLSR ddPTM_HeLa_A486_30min_R1 1 TAAFVLAMLSR 11 0 E9PR46;J3QL17;Q9UHL0-2;Q9UHL0;H0YD26;A0A1B0GV69;I3L352;I3L0H8;Q9NUU7-2;F6QDS0;Q9NUU7 E9PR46;F6QDS0 DDX25;DDX19A ATP-dependent RNA helicase DDX25;ATP-dependent RNA helicase DDX19A 0 0 103.31 0.0095265 19016000 13874 18474 20510 5407.3 28166 12853 12961 18075 11802 12646 FALSE FALSE TRUE 12901.50425 17010.05296 28452.02128 12588.46767 24633.15764 11267.32754 9718.020713 13959.71707 12825.00686 9479.359288 1.361010154 1.794430662 3.001470923 1.327987186 2.598609979 1.188616994 1.025176957 1.472643525 1.352940264 1 13.21057384 -6.291280554 24.13029308 1.225996877 2.020800882 0.401847198 0.49314147 482.5962109 390237.0637 0.170341269 0.15025278 5.11E-07 6.291280554 0.794804006 TAAILHGGS(ph)PDFVGNGK ddPTM_HeLa_A485_30min_R1 2 TAAILHGGSPDFVGNGK 17 0 H0YME5;Q9P2K8-2;Q9P2K8;Q9P2K8-3 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 TAAILHGGS(1)PDFVGNGK;TAAILHGGS(1)PDFVGNGK ; 285.76 4.14E-60 1201250000 1343500 1282450 993750 1674650 1813260 1317290 2045060 2212700 1220590 2220000 TRUE FALSE FALSE 1642356.94 1432421.372 1361379.478 1766131.889 1632725.468 1386261.267 1608116.224 1670031.856 1465551.217 1666594.856 0.985456624 0.859489855 0.816862883 1.059724793 0.979677491 0.831792599 0.964911309 1.002062289 0.879368619 1 20.668472 -14 0.108783271 1.212017055 0.89196797 0.05800668 0.077056816 529.0413074 3.831001397 25.28580749 1.040363103 1.00E-14 14 -0.320049085 TAAILHGGS(ph)PDFVGNGK ddPTM_HeLa_A486_30min_R1 4 TAAILHGGSPDFVGNGK 17 0 H0YME5;Q9P2K8-2;Q9P2K8;Q9P2K8-3 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 TAAILHGGS(1)PDFVGNGK;TAAILHGGS(1)PDFVGNGK;TAAILHGGS(1)PDFVGNGK;TAAILHGGS(1)PDFVGNGK ;;; 221.99 2.57E-34 1245030000 2389580 2243770 1359180 994400 2168410 2338860 2966980 2833630 1794490 2946680 TRUE FALSE FALSE 2222082.782 2065965.494 1885490.896 2315013.454 1896427.798 2050315.233 2224610.222 2188474.307 1950037.838 2208812.148 1.006008041 0.935328744 0.853622114 1.048080732 0.8585736 0.92824337 1.007152294 0.990792408 0.882844582 1 21.0748393 -6.710797494 24.99334987 0.969430491 0.93568974 0.055713017 0.063737636 333.4618547 164572.7735 0.023857714 0.018480083 1.95E-07 6.710797494 -0.033740751 TAAKGEAAAERPGEAAVAS(ph)SPSKANGQENGHVK ddPTM_HeLa_A485_30min_R1 2 TAAKGEAAAERPGEAAVASSPSKANGQENGHVK 33 3 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.563)S(0.436)PS(0.002)KANGQENGHVK;TAAKGEAAAERPGEAAVAS(0.499)S(0.499)PS(0.001)KANGQENGHVK ; 118.11 1.40E-05 3663300000 1884980 2210360 961550 1852760 3348000 3636700 7480400 10418900 2028230 4197500 TRUE FALSE FALSE 2304287.298 2468842.374 1317267.358 1953971.587 3014661.364 3827111.989 5882151.431 7863648.439 2435277.157 3151140.499 0.731255017 0.783475816 0.418028761 0.620083931 0.956688972 1.214516455 1.866673807 2.495492804 0.772824048 1 21.58744265 -6.302711312 2.095087772 1.644570159 0.647381773 0.420435916 0.457754555 0.278235099 2.398793952 0.182064847 0.162766065 4.98E-07 6.302711312 -0.997188386 TAAKGEAAAERPGEAAVAS(ph)SPSKANGQENGHVK ddPTM_HeLa_A486_30min_R1 2 TAAKGEAAAERPGEAAVASSPSKANGQENGHVK 33 3 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.503)S(0.484)PS(0.013)KANGQENGHVK;TAAKGEAAAERPGEAAVAS(0.499)S(0.499)PS(0.001)KANGQENGHVK ; 98.561 6.08E-05 2686300000 1158890 605600 236352 724160 862530 824470 1567610 1691510 458080 1949450 TRUE FALSE FALSE 1077657.796 557610.0504 327873.8241 1685881.077 754343.4446 722755.274 1175377.398 1306390.098 497786.7432 1461295.031 0.737467638 0.381586222 0.224372093 1.153689735 0.516215705 0.494599146 0.804339557 0.893994758 0.340647667 1 20.47881605 -14 0.128513776 2.181283324 0.468206877 0.137569782 0.272013425 294.1918509 2.391702236 90.91915496 2.158370413 1.00E-14 14 -1.713076447 TAAKGEAAAERPGEAAVASS(ph)PSK ddPTM_HeLa_A485_30min_R1 4 TAAKGEAAAERPGEAAVASSPSK 23 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.053)S(0.893)PS(0.053)K;TAAKGEAAAERPGEAAVAS(0.039)S(0.954)PS(0.007)K;TAAKGEAAAERPGEAAVAS(0.001)S(0.866)PS(0.133)K;TAAKGEAAAERPGEAAVAS(0.196)S(0.729)PS(0.075)K ;;; 208.19 2.15E-29 9358900000 4622790 4564340 2504970 5446370 7065900 6041300 11666000 12066000 4034590 9482000 TRUE FALSE FALSE 5651113.687 5098099.859 3431662.643 5743891.402 6362394.186 6357613.126 9173463.798 9106794.581 4844295.206 7118311.903 0.793883966 0.716195065 0.48208939 0.806917634 0.893806604 0.893134947 1.288713381 1.279347506 0.680539891 1 22.76310372 -5.996453145 1.58250295 1.071486057 0.674117662 0.426550557 0.182196401 0.348349775 1.778149705 0.073694209 0.082123197 1.01E-06 5.996453145 -0.397368394 TAAKGEAAAERPGEAAVASS(ph)PSK ddPTM_HeLa_A486_30min_R1 4 TAAKGEAAAERPGEAAVASSPSK 23 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.05)S(0.9)PS(0.05)K;TAAKGEAAAERPGEAAVAS(0.027)S(0.946)PS(0.027)K;TAAKGEAAAERPGEAAVAS(0.037)S(0.957)PS(0.006)K;TAAKGEAAAERPGEAAVAS(0.08)S(0.781)PS(0.139)K ;;; 238.59 5.05E-49 6897310000 5546980 3485930 1729420 3366690 4062060 4355110 7619260 7439770 2484860 8600500 TRUE FALSE FALSE 5158165.347 3209692.211 2399097.739 7837824.463 3552558.558 3817820.808 5712840.56 5745896.78 2700249.666 6446878.82 0.80010273 0.497867619 0.372133215 1.215754892 0.551050928 0.592196769 0.886140521 0.891267998 0.41884604 1 22.62016944 -14 0.230031645 2.560828783 0.664459808 0.108501977 0.248626624 382.3662959 3.828101671 279.6009123 0.432691245 1.00E-14 14 -1.896368975 TAAKGEAAAERPGEAAVASS(ph)PSKANGQENGHVK ddPTM_HeLa_A485_30min_R1 2 TAAKGEAAAERPGEAAVASSPSKANGQENGHVK 33 3 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.233)S(0.76)PS(0.008)KANGQENGHVK;TAAKGEAAAERPGEAAVAS(0.246)S(0.74)PS(0.014)KANGQENGHVK ; 104.86 0.0001156 3218000000 307470 344020 137146 354130 536360 575510 1214880 1593640 292350 619110 TRUE FALSE FALSE 375865.6407 384250.1464 187882.0125 373475.2252 482958.1151 605642.8137 955310.9633 1202797.291 351021.9634 464777.2709 0.808700563 0.826740399 0.404240965 0.803557421 1.039117326 1.303081824 2.055416698 2.587900413 0.755247697 1 18.82617999 -6.24908359 2.0272301 1.718066099 0.70872687 0.373121447 0.500616313 0.308752629 2.492998841 0.198011994 0.183394032 5.64E-07 6.24908359 -1.009339229 TAAKGEAAAERPGEAAVASS(ph)PSKANGQENGHVK ddPTM_HeLa_A486_30min_R1 1 TAAKGEAAAERPGEAAVASSPSKANGQENGHVK 33 3 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.239)S(0.721)PS(0.04)KANGQENGHVK 131.71 2.11E-06 1216000000 456100 229360 97419 260850 336010 279850 610880 582410 147640 682370 TRUE FALSE FALSE 424129.7453 211184.6783 135142.2458 607271.9826 293864.4926 245324.9523 458031.3628 449807.9569 160437.5541 511500.1105 0.829187984 0.412873182 0.264207657 1.187237246 0.574515013 0.479618571 0.895466791 0.879389755 0.31366084 1 18.96437503 -11.66962249 2.11138696 9.999896911 0.652993514 0.123686581 0.280479258 11551319.3 347188.2268 501852061.5 0.069660361 2.14E-12 11.66962249 -9.346903396 TAANKS(ph)PCETISSPSSTLESK ddPTM_HeLa_A485_30min_R1 2 TAANKSPCETISSPSSTLESK 21 1 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 TAANKS(0.957)PCET(0.043)ISSPSSTLESK;TAANKS(0.862)PCET(0.138)ISSPSSTLESK ; 184.4 1.66E-19 475250000 270330 190362 143456 539180 387170 300730 563290 504780 257567 752970 TRUE FALSE FALSE 330463.9759 212623.18 196526.3441 568634.0381 348621.9954 316475.7578 442938.4898 380981.9135 309258.3344 565268.4364 0.584614237 0.376145502 0.347669057 1.005953988 0.616737063 0.559868086 0.783589639 0.673984056 0.547099952 1 19.10857662 -14 0.055972974 2.333061812 8.31E-15 0.32299796 0.176109661 580.407731 2.380341002 111.7865413 20.9264566 1.00E-14 14 -2.333061812 TAANKS(ph)PCETISSPSSTLESK ddPTM_HeLa_A486_30min_R1 2 TAANKSPCETISSPSSTLESK 21 1 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 TAANKS(0.908)PCET(0.092)ISSPSSTLESK;TAANKS(0.98)PCET(0.02)ISSPSSTLESK ; 222.92 6.14E-36 858760000 479320 432170 164813 269310 372200 596020 776420 709120 356680 841010 TRUE FALSE FALSE 445722.1432 397923.2753 228633.0074 626967.2902 325515.2054 522489.1123 582151.5039 547668.856 387597.3096 630415.6219 0.707029026 0.631207828 0.362670276 0.994530066 0.516350157 0.828801023 0.923440796 0.86874252 0.614828212 1 19.26594376 -5.962288329 0.994665306 0.845354788 0.606736767 0.220859838 0.179004822 0.846926144 1.80985202 0.088707108 0.110034415 1.09E-06 5.962288329 -0.238618021 TAANKSPCET(ph)ISSPSSTLESK ddPTM_HeLa_A486_30min_R1 1 TAANKSPCETISSPSSTLESK 21 1 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 TAANKS(0.368)PCET(0.632)ISSPSSTLESK 210.22 7.97E-27 358910000 188920 187160 87752 136100 172060 267330 390800 357520 165030 390590 TRUE FALSE FALSE 175677.6836 172328.76 121731.9245 316847.6781 150478.6304 234349.5426 293017.7065 276120.5006 179334.9333 292783.7217 0.600025447 0.588587231 0.415774223 1.082190213 0.513958322 0.80041862 1.000799173 0.943086928 0.612516749 1 18.15947582 -5.415727695 0.780263213 0.8715994 0.52209345 0.27697288 0.192049028 1.140172053 1.325816749 0.095624135 0.264748173 3.84E-06 5.415727695 -0.34950595 TAANKSPCETIS(ph)SPSSTLESK ddPTM_HeLa_A485_30min_R1 1 TAANKSPCETISSPSSTLESK 21 1 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 T(0.001)AANKS(0.039)PCET(0.019)IS(0.852)S(0.087)PS(0.001)S(0.001)TLESK 105.73 5.59E-05 313910000 74950 85224 42380 82306 92668 105720 178820 217820 65412 128630 TRUE FALSE FALSE 91622.36893 95190.20545 58058.12558 86802.16837 83441.64854 111255.3357 140613.6462 164399.3035 78539.58841 96564.90826 0.948816403 0.985763951 0.601234202 0.898899714 0.864099082 1.152130083 1.456156783 1.702474599 0.813334676 1 16.55921139 -6.375999672 3.337094599 1.301894795 0.852569125 0.346364293 0.246841106 0.252882886 5.272579664 0.091705577 0.079595333 4.21E-07 6.375999672 -0.44932567 TAAPS(ph)PSLLYK ddPTM_HeLa_A485_30min_R1 2 TAAPSPSLLYK 11 0 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 TAAPS(0.996)PS(0.004)LLYK;TAAPS(0.997)PS(0.003)LLYK ; 200.93 1.15E-14 633810000 1102560 1044140 749090 1161790 1342490 1014850 1376020 1448910 837150 1477710 TRUE FALSE FALSE 1347820.668 1166243.09 1026209.563 1225255.646 1208826.982 1067985.977 1082022.086 1093562.551 1005158.326 1109344.092 1.21497079 1.051290667 0.925059745 1.104486565 1.089677216 0.962718407 0.975371026 0.985773989 0.906083453 1 20.08127549 -6.267742257 24.27959972 0.965686594 1.068738442 0.382377265 0.070202778 426.5447295 1643106.833 0.025297627 0.02285268 5.40E-07 6.267742257 0.103051847 TAAPS(ph)PSLLYK ddPTM_HeLa_A486_30min_R1 2 TAAPSPSLLYK 11 0 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 TAAPS(0.999)PS(0.001)LLYK;TAAPS(0.989)PS(0.011)LLYK ; 196.7 2.96E-12 428940000 1575880 1364640 801330 525720 1320160 1370550 1641390 1614080 1138650 1500910 TRUE FALSE FALSE 1465418.95 1256500.956 1111626.436 1223902.728 1154573.223 1201465.476 1230696.861 1246589.219 1237349.099 1125072.367 1.302510837 1.116817899 0.988048831 1.08784356 1.026221296 1.067900618 1.0938824 1.108008032 1.09979512 1 20.10158637 -4.304669876 3.463536623 1.06369401 1.321710671 0.76455582 0.040411515 0.121371417 2.516743656 0.010279703 0.076496535 4.96E-05 4.304669876 0.258016661 TAAVCVAK ddPTM_HeLa_A486_30min_R1 1 TAAVCVAK 8 0 K7ERB2;C9J1E7;A0A087WYD1;A0A087WU93;A0A087WZQ6;A0A087X253;P63010-3;Q10567-4;P63010;Q10567-3;Q10567-2;Q10567;P63010-2 K7ERB2 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 0 0 98.997 0.025152 5785400 13499 23584 17278 7841.9 26805 19559 23544 22585 17594 20508 FALSE FALSE TRUE 12552.78981 21715.11795 23968.50432 18256.33951 23442.86695 17146.00944 17653.04218 17442.88853 19119.06209 15372.66332 0.816565715 1.412580078 1.559164071 1.187584684 1.524971078 1.115357117 1.148339869 1.134669261 1.243705251 1 13.90807951 TAAYAIPMLQLLLHR ddPTM_HeLa_A485_30min_R1 2 TAAYAIPMLQLLLHR 15 0 F8WEI3;F8WDT8;G3V0G3;H7C3E9;Q9NY93-2;Q9NY93 F8WEI3 DDX56 Probable ATP-dependent RNA helicase DDX56 0 0 ; ; 140.1 1.56E-06 18748800 27102 26953 24038 26959 30594 23076 37827 36335 17172.1 35385 FALSE FALSE TRUE 33130.7464 30104.91889 32930.6565 28431.70191 27547.95394 24284.22368 29744.95243 27423.78428 20618.38296 26564.17071 1.247196713 1.133290371 1.239664391 1.070302635 1.037034216 0.914172098 1.119739545 1.032359887 0.776172657 1 14.69719405 -5.55509972 1.923827188 0.980582098 1.202106523 0.562125475 0.089514248 0.268726108 2.008915171 0.029533738 0.045474713 2.79E-06 5.55509972 0.221524425 TAAYAIPMLQLLLHR ddPTM_HeLa_A486_30min_R1 2 TAAYAIPMLQLLLHR 15 0 F8WEI3;F8WDT8;G3V0G3;H7C3E9;Q9NY93-2;Q9NY93 F8WEI3 DDX56 Probable ATP-dependent RNA helicase DDX56 0 0 ; ; 135.37 6.84E-06 16487000 18057.7 23064 20918 8864.2 20691 19919.2 27985 25865 22717 30737 FALSE FALSE TRUE 16791.94848 21236.32464 29018.0098 20636.30557 18095.74184 17461.77163 20982.857 19976.10413 24686.12785 23040.25514 0.728809138 0.921705273 1.259448284 0.895663067 0.785396765 0.757881001 0.910704195 0.867008807 1.071434657 1 14.49186907 -7.76000921 24.99318661 1.03571736 0.8970216 0.145335786 0.139899725 80.97584425 1415324.8 0.115850623 0.038357577 1.74E-08 7.76000921 -0.13869576 TAAYGHFGRDS(ph)FPWEVPK ddPTM_HeLa_A485_30min_R1 2 TAAYGHFGRDSFPWEVPK 18 1 P31153 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 1 0 T(0.005)AAY(0.001)GHFGRDS(0.995)FPWEVPK;T(0.056)AAYGHFGRDS(0.944)FPWEVPK ; 108.4 7.24E-05 332760000 372410 360890 277330 510320 538580 405230 627500 675980 356710 683000 TRUE FALSE FALSE 455251.3197 403092.9462 379925.9077 538197.4894 484957.0841 426447.2162 493429.4988 510194.8451 428298.4251 512740.6697 0.887878311 0.786153645 0.740970885 1.049648528 0.945813572 0.831701563 0.962337353 0.995034869 0.835311982 1 18.96786981 -5.249406171 24.99445068 0.941434626 0.803116217 0.438241654 0.072874547 736.5774957 1529959.611 0.019851457 0.034057615 5.63E-06 5.249406171 -0.138318409 TADGRVS(ph)PAGGTLDDKPK ddPTM_HeLa_A485_30min_R1 3 TADGRVSPAGGTLDDKPK 18 2 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK ;; 166.49 1.76E-12 3971600000 4489220 2661180 1586640 8195360 4246980 4238880 8234340 6945120 3116660 11891400 TRUE FALSE FALSE 5487831.501 2972381.852 2173604.162 8643051.765 3824135.759 4460821.202 6475005.991 5241818.43 3742145.074 8927092.825 0.614738931 0.332961907 0.243483988 0.968182132 0.428374145 0.499694726 0.725320787 0.587180903 0.419189668 1 23.089759 -14 0.24045665 3.607632713 0.49159242 0.326236126 0.197511062 209.1615188 2.087726907 267.3058556 0.315008282 1.00E-14 14 -3.116040293 TADGRVS(ph)PAGGTLDDKPK ddPTM_HeLa_A486_30min_R1 5 TADGRVSPAGGTLDDKPK 18 2 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 T(0.002)ADGRVS(0.998)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK;TADGRVS(0.999)PAGGT(0.001)LDDKPK;TADGRVS(1)PAGGTLDDKPK;TADGRVS(1)PAGGTLDDKPK ;;;; 191.99 1.41E-18 7643390000 8362700 6450010 2176450 5504220 5401240 9586530 13463200 11761230 5702950 16199800 TRUE FALSE FALSE 7776517.915 5938887.717 3019229.727 12814102.33 4723766.115 8403841.397 10094564.96 9083454.675 6197286.298 12143264.64 0.640397632 0.489068458 0.248634104 1.055243603 0.389002979 0.692057832 0.831289218 0.748024106 0.510347628 1 23.533653 -13.99999992 0.080860636 2.190096483 0.268497577 0.229267697 0.21586515 367.7559935 2.098210858 78.44569421 7.129535961 1.00E-14 13.99999992 -1.921598906 TADSSS(ph)S(ph)EDEEEYVVEK ddPTM_HeLa_A486_30min_R1 1 TADSSSSEDEEEYVVEK 17 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 2 0 T(0.025)ADS(0.293)S(0.339)S(0.394)S(0.949)EDEEEYVVEK 84.14 0.00067663 0 162420 158680 85792 76662 146730 182070 228540 215470 128050 235860 TRUE FALSE FALSE 151035.1967 146105.6189 119012.96 178473.0103 128325.7552 159608.0546 171356.8748 166412.1847 139149.4771 176799.1208 0.854275723 0.826393357 0.673153574 1.009467748 0.725828017 0.902764979 0.969217912 0.941250069 0.787048468 1 17.43175157 -6.495840818 23.52351254 0.921841606 0.820248119 0.218757303 0.097185801 558.6877853 486069.8286 0.033145 0.029128562 3.19E-07 6.495840818 -0.101593486 TADSSSS(ph)EDEEEYVVEK ddPTM_HeLa_A485_30min_R1 2 TADSSSSEDEEEYVVEK 17 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 1 0 TADSSS(0.005)S(0.995)EDEEEYVVEK;TADSSS(0.017)S(0.983)EDEEEYVVEK ; 437.88 2.40E-193 1540510000 847980 746780 613350 1076570 1088650 890700 1386440 1260400 699140 1429650 TRUE FALSE FALSE 1036610.226 834109.4249 840253.6886 1135380.293 980260.1835 937335.6747 1090215.768 951284.9238 839450.9851 1073264.566 0.965847805 0.777170375 0.782895211 1.057875504 0.913344402 0.873350062 1.015794057 0.886347089 0.782147303 1 20.03357432 -5.219845967 24.9811467 0.928142274 0.835491068 0.176976098 0.088949508 865.9664881 520101.3538 0.0241053 0.041751081 6.03E-06 5.219845967 -0.092651206 TADSSSS(ph)EDEEEYVVEK ddPTM_HeLa_A486_30min_R1 3 TADSSSSEDEEEYVVEK 17 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 1 0 TADSSS(0.062)S(0.938)EDEEEYVVEK;TADS(0.013)S(0.013)S(0.132)S(0.841)EDEEEYVVEK;TADSSS(0.003)S(0.997)EDEEEYVVEK ;; 313.04 4.30E-79 1179912000 1294750 1292810 765405 644165 1358280 1455630 1853640 1761990 1158740 1870900 TRUE FALSE FALSE 1203994.711 1190363.027 1061790.314 1499648.674 1187911.857 1276049.17 1389839.666 1360823.341 1259180.516 1402414.462 0.858515612 0.848795459 0.757115919 1.069333435 0.847047637 0.909894474 0.991033466 0.970343203 0.89786618 1 20.41948135 -5.245580157 24.99847204 0.948953088 0.824207647 0.481045483 0.063347132 748.1010897 1179210.391 0.016877237 0.029111805 5.68E-06 5.245580157 -0.124745441 TAEISSTALRSS(ph)PIMR ddPTM_HeLa_A485_30min_R1 1 TAEISSTALRSSPIMR 16 1 A0A087WZV0;O43314;O43314-2;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 TAEIS(0.001)S(0.004)T(0.004)ALRS(0.23)S(0.762)PIMR 81.316 0.0016852 311420000 130280 290540 240360 89382 415600 271670 315660 497060 218400 144820 TRUE FALSE FALSE 159260.3365 324516.1256 329279.1662 94264.71233 374221.4047 285894.2211 248216.6623 375155.2556 262230.8767 108719.0392 1.464879911 2.984906121 3.028716668 0.867048799 3.442096319 2.629661034 2.283102059 3.4506859 2.412005097 1 16.73024509 TAEK(ac)TSLSFK ddPTM_HeLa_A486_30min_R1 2 TAEKTSLSFK 10 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 0 1 ; TAEK(1)TSLSFK;TAEK(1)TSLSFK 222.3 1.83E-19 140312000 117459 178491 153041 93912 267930 249430 275060 271840 208977 271520 FALSE TRUE FALSE 109225.7307 164346.7231 212302.5738 218631.882 234323.7211 218657.8626 206237.0787 209947.9662 227091.2946 203529.6247 0.536657653 0.807483055 1.04310404 1.074201765 1.151300315 1.074329415 1.013302506 1.031535171 1.115765309 1 17.63487928 -4.458851651 1.911322414 1.070304543 0.476946016 0.935893537 0.043838318 0.121779831 0.635624974 0.012733638 0.111452797 3.48E-05 4.458851651 -0.593358528 TAENFR ddPTM_HeLa_A485_30min_R1 2 TAENFR 6 0 P49792;A6NM32;R4GN99;H0Y548;P30405-2;P30405;P62937;C9J5S7;F8WE65;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34;P0DN37;O43447;C9JQD4;Q08752 P49792;P62937;Q08752 RANBP2;PPIH;PPIF;PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E;PPID "E3 SUMO-protein ligase RanBP2;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase D" 0 0 ; ; 178.24 0.00024634 349180000 444110 495210 472330 482300 648580 494870 669450 672440 447230 677380 FALSE FALSE TRUE 542900.7373 553120.5017 647064.5223 508646.8278 584005.0979 520780.628 526416.5386 507523.0357 536984.9588 508521.6323 1.067605984 1.087702994 1.272442471 1.000246195 1.148437079 1.024107127 1.035190059 0.998036275 1.055972696 1 18.95594962 -6.275363218 23.30109828 1.023321529 1.11609421 0.325377915 0.066678024 397.3315934 664918.5434 0.023028837 0.020430436 5.30E-07 6.275363218 0.09277268 TAENFR ddPTM_HeLa_A486_30min_R1 1 TAENFR 6 0 P49792;A6NM32;R4GN99;H0Y548;P30405-2;P30405;P62937;C9J5S7;F8WE65;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34;P0DN37;O43447;C9JQD4;Q08752 P49792;P62937;Q08752 RANBP2;PPIH;PPIF;PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E;PPID "E3 SUMO-protein ligase RanBP2;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase D" 0 0 128.38 0.017133 34893000 52782 55010 43420 18923 64147 54158 63291 62699 50648 70751 FALSE FALSE TRUE 49082.25437 50650.80726 60233.38683 44053.70032 56101.08511 47476.5366 47454.92238 48423.80641 55038.20942 53034.48909 0.925478028 0.955054119 1.135739928 0.83066135 1.057822675 0.895201168 0.894793618 0.913062561 1.037781458 1 15.69464325 -5.27589553 24.99874009 0.943702033 1.000387056 0.091540663 0.083361927 1989.796009 3440910.729 0.022926025 0.034194811 5.30E-06 5.27589553 0.056685023 TAEPS(ph)PGQDGTSR ddPTM_HeLa_A485_30min_R1 2 TAEPSPGQDGTSR 13 0 Q9Y2D5-6;Q9Y2D5-4;C9JZH4;B1ALY0;Q8IXS6-2 Q9Y2D5-6;B1ALY0 AKAP2;PALM2;PALM2-AKAP2 A-kinase anchor protein 2;Paralemmin-2 1 0 TAEPS(1)PGQDGTSR;TAEPS(1)PGQDGTSR ; 95.345 0.0011885 314900000 370510 452890 413220 354230 608150 455640 508810 651680 444490 477730 TRUE FALSE FALSE 452928.6713 505851.5459 566087.2735 373580.6879 547600.4507 479496.6058 400098.5869 491854.4582 533695.0659 358640.703 1.262903701 1.410468867 1.578424504 1.041657249 1.526877586 1.336983231 1.115597264 1.371440704 1.488105119 1 18.45217971 -10.47030084 2.923997748 0.990219545 1.346436003 0.291902671 0.162609049 21730511.77 24687123.03 1726747.319 0.0398644 3.39E-11 10.47030084 0.356216458 TAEPS(ph)PGQDGTSR ddPTM_HeLa_A486_30min_R1 1 TAEPSPGQDGTSR 13 0 Q9Y2D5-6;Q9Y2D5-4;C9JZH4;B1ALY0;Q8IXS6-2 Q9Y2D5-6;B1ALY0 AKAP2;PALM2;PALM2-AKAP2 A-kinase anchor protein 2;Paralemmin-2 1 0 TAEPS(1)PGQDGTSR 92.039 0.0014581 247210000 198470 197410 179610 56786 251120 185770 197210 205980 197480 218930 TRUE FALSE FALSE 184558.2779 181766.5126 249159.8021 132200.6778 219622.188 162851.5862 147865.9721 159082.8505 214597.7254 164108.503 1.124611306 1.107599602 1.518262598 0.805568727 1.338274276 0.99234094 0.901025659 0.969376038 1.307657565 1 17.32429047 -5.268989552 24.99746185 1.047656121 1.235902014 0.199579013 0.187669869 995.7242723 3296689.631 0.051808244 0.078558334 5.38E-06 5.268989552 0.188245894 TAESQT(ph)PTPSATSFFSGK ddPTM_HeLa_A485_30min_R1 1 TAESQTPTPSATSFFSGK 18 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 TAESQT(0.997)PT(0.003)PSATSFFSGK 192.85 2.67E-19 0 106420 88214 75291 121450 115060 82986 110980 92732 67021 130040 TRUE FALSE FALSE 130092.7619 98529.85994 103144.274 128084.506 103604.2224 87331.01864 87268.21638 69989.3316 80471.49995 97623.42121 1.332597857 1.009285054 1.056552544 1.312026401 1.061263999 0.894570356 0.893927044 0.716931764 0.824305264 1 16.57493969 -6.228051078 2.653088962 0.841338609 1.159455439 0.618840664 0.115063861 0.190997607 2.664648013 0.042828543 0.040591901 5.91E-07 6.228051078 0.31811683 TAESQT(ph)PTPSATSFFSGK ddPTM_HeLa_A486_30min_R1 2 TAESQTPTPSATSFFSGK 18 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 T(0.003)AES(0.176)QT(0.802)PT(0.019)PSATSFFSGK;TAESQT(0.366)PT(0.366)PS(0.174)AT(0.089)S(0.005)FFSGK ; 195.46 4.54E-18 176950000 463720 459375 256025 168054 423660 420414 527470 496360 388817 600870 TRUE FALSE FALSE 431215.6227 422972.452 355164.7366 391238.205 370520.6123 368547.5951 395491.427 383349.6635 422519.9706 450408.241 0.957388394 0.939086841 0.788539605 0.86863021 0.822632844 0.818252336 0.878073248 0.851116007 0.938082238 1 18.7808737 -7.964624761 3.260399328 0.999526515 0.862881808 0.436197713 0.049413631 0.207394024 4.977527291 0.050158331 0.01337119 1.08E-08 7.964624761 -0.136644707 TAESQTPT(ph)PSATSFFSGK ddPTM_HeLa_A485_30min_R1 2 TAESQTPTPSATSFFSGK 18 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 TAES(0.001)QT(0.118)PT(0.879)PS(0.001)ATSFFSGK;TAESQT(0.125)PT(0.872)PS(0.003)ATSFFSGK ; 206.7 4.52E-26 0 199115 161024 150524 228350 203279 162978 217090 167769 129259 243540 TRUE FALSE FALSE 243407.4448 179854.3561 206209.0914 240824.1823 183039.829 171511.2761 170706.948 126623.3897 155200.0957 182829.96 1.331332375 0.983724747 1.127873634 1.317203057 1.001147892 0.938091744 0.933692421 0.692574618 0.848876714 1 17.48014298 -6.220456323 1.806628867 0.847374021 1.169348148 0.57469736 0.121927912 0.257668222 1.659510733 0.049963867 0.047015714 6.02E-07 6.220456323 0.321974126 TAESQTPTPSATSFFSGKS(ph)PVTTLLECMHK ddPTM_HeLa_A486_30min_R1 1 TAESQTPTPSATSFFSGKSPVTTLLECMHK 30 1 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 TAESQTPTPSATSFFS(0.001)GKS(0.998)PVTTLLECMHK 347.59 1.16E-146 406820000 604730 538870 264190 270480 501400 666400 820160 774310 428360 828920 TRUE FALSE FALSE 562341.5498 496167.9787 366491.4433 629691.1093 438509.7366 584186.3435 614947.2932 598016.5161 465490.5897 621353.0366 0.905027443 0.798528291 0.589828039 1.013419219 0.705733634 0.940184258 0.989690654 0.962442413 0.749156377 1 19.24505368 -6.29045845 24.50755618 0.929784662 0.802188072 0.206528251 0.123259221 923.2399241 779703.057 0.04263847 0.037610164 5.12E-07 6.29045845 -0.12759659 TAFDEAIAELDTLSEESYKDSTLIMQLLR ddPTM_HeLa_A485_30min_R1 1 TAFDEAIAELDTLSEESYKDSTLIMQLLR 29 1 E7EX29;P63104;B0AZS6;B7Z2E6;H0YB80;P63104-2 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 74.274 0.0057007 231050000 6032 8360 5268.3 7598.9 11867 8978.9 13906 19349 7472.7 14748 FALSE FALSE TRUE 7373.79759 9337.629278 7217.263402 8014.008666 10685.47981 9449.02132 10934.8695 14603.62741 8972.402346 11071.59502 0.666010415 0.843386094 0.651872056 0.723835062 0.965125603 0.85344716 0.987650784 1.319017485 0.810398351 1 13.43457546 -6.158377618 1.138660505 1.049577377 0.720509311 0.472698303 0.136825833 0.403355175 1.09143599 0.066976847 0.066482915 6.94E-07 6.158377618 -0.329068066 TAFYNEDDS(ph)EEEQR ddPTM_HeLa_A485_30min_R1 6 TAFYNEDDSEEEQR 14 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR ;;;;; 257.54 1.30E-41 4228090000 1979851 2189115 1985001 2418875 2795814 2108341 2682948 2854315 2212664 3378914 TRUE FALSE FALSE 2420262.025 2445112.956 2719335.473 2551012.016 2517452.941 2218730.475 2109714.242 2154289.771 2656725.369 2536612.924 0.954131394 0.963928289 1.072034068 1.005676504 0.992446627 0.874682319 0.831705233 0.849278087 1.047351507 1 21.27447196 -6.202777507 7.160239007 0.90571546 1.000769205 0.224634537 0.068751168 0.345498833 36.60650458 0.023214382 0.023155299 6.27E-07 6.202777507 0.095053745 TAFYNEDDS(ph)EEEQR ddPTM_HeLa_A486_30min_R1 4 TAFYNEDDSEEEQR 14 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR ;;; 294.94 5.97E-58 5358000000 2131320 2416650 1910570 784742 2548900 2361800 2763170 2629360 2574150 2917170 TRUE FALSE FALSE 1981925.474 2225145.853 2650393.871 1826919.035 2229193.194 2070425.129 2071795.64 2030712.127 2797279.395 2186691.644 0.906358004 1.017585565 1.212056523 0.835471722 1.019436462 0.946829945 0.947456696 0.928668718 1.279229013 1 21.06031836 -7.73989594 24.99988867 1.13961475 0.980680917 0.250035289 0.112671081 283.7611179 329290.1389 0.074040238 0.027929385 1.82E-08 7.73989594 -0.158933834 TAFYSFYLPIAAAMYMAGIDGEKEHANAK ddPTM_HeLa_A485_30min_R1 2 TAFYSFYLPIAAAMYMAGIDGEKEHANAK 29 1 A0A087X090;P14324-2;P14324 A0A087X090 FDPS Farnesyl pyrophosphate synthase 0 0 ; ; 122.53 2.89E-12 9781400 16744.4 12720.4 10943.7 25740 22963.3 14788.3 27169.5 20489.7 12490.1 36371 FALSE FALSE TRUE 20469.13401 14207.94013 14992.23004 27146.11102 20676.99322 15562.59252 21364.51437 15464.56895 14996.7485 27304.37906 0.749664879 0.5203539 0.54907786 0.994203566 0.757277548 0.569966909 0.782457434 0.566376877 0.549243346 1 14.73684473 -11.08264005 2.519595772 1.529519224 0.672222973 0.323147856 0.142852125 44650106.32 10963013.66 136062238.2 0.037946767 8.27E-12 11.08264005 -0.857296251 TAFYSFYLPIAAAMYMAGIDGEKEHANAK ddPTM_HeLa_A486_30min_R1 1 TAFYSFYLPIAAAMYMAGIDGEKEHANAK 29 1 A0A087X090;P14324-2;P14324 A0A087X090 FDPS Farnesyl pyrophosphate synthase 0 0 104.33 3.78E-08 2307900 6594.5 9576.3 7842.5 5464.7 14551 12147 16258 14472 12119 11657 FALSE FALSE TRUE 6132.259604 8817.439112 10879.32603 12722.09777 12725.8779 10648.42664 12190.07644 11177.04152 13169.48468 8738.011326 0.701791217 1.009089916 1.245057442 1.455948876 1.456381484 1.218632735 1.395063017 1.279128752 1.50714896 1 13.09308926 -4.523981713 1.875825341 1.345686888 0.657387162 0.667130941 0.140108521 0.264972523 1.426615458 0.036560877 0.266739032 2.99E-05 4.523981713 -0.688299726 TAGT(ph)RMLEPGT(ph)EKLAR ddPTM_HeLa_A485_30min_R1 1 TAGTRMLEPGTEKLAR 16 2 Q3B7T3-3 Q3B7T3-3 2 0 T(0.453)AGT(0.552)RMLEPGT(0.995)EKLAR 49.528 0.028714 460860000 174690 226230 179380 151640 322260 280220 390000 595940 205750 245730 TRUE FALSE FALSE 213549.1878 252685.6306 245740.1266 159923.7092 290174.6629 294891.8859 306673.314 449784.7806 247042.1377 184474.0333 1.157611096 1.369762595 1.332112288 0.866917183 1.572983783 1.598554987 1.662419954 2.438201044 1.339170252 1 17.49305823 -5.940980945 8.35919643 1.688456383 1.20574133 0.227089486 0.364272975 0.356001227 45.35460773 0.111082851 0.125994251 1.15E-06 5.940980945 -0.482715053 TAHETDKSEGGK(ac)R ddPTM_HeLa_A485_30min_R1 2 TAHETDKSEGGKR 13 2 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 0 1 ; TAHETDKSEGGK(1)R;TAHETDKSEGGK(1)R 182.33 8.39E-10 76003000 69492 79249 59218 64871 99554 80215 127671 141772 87487 134064 FALSE TRUE FALSE 84950.25566 88516.48118 81125.20247 68414.73847 89642.0542 84414.93336 100393.0479 107002.1947 105044.8384 100644.3121 0.844064149 0.879498099 0.806058493 0.67976756 0.890681772 0.838745197 0.997503444 1.063171803 1.043723547 1 16.61890611 -6.78449648 2.561500224 1.041639443 0.816775709 0.760759414 0.056050324 0.14039714 1.881592985 0.027711004 0.018234969 1.64E-07 6.78449648 -0.224863735 TAHETDKSEGGK(ac)R ddPTM_HeLa_A486_30min_R1 2 TAHETDKSEGGKR 13 2 P83916;K7ELA4;B5MD17;J3KS05;C9JWS9 P83916 CBX1 Chromobox protein homolog 1 0 1 ; TAHETDK(0.301)SEGGK(0.699)R;TAHETDKSEGGK(1)R 124.3 0.00031241 63321000 15807.2 10596 11052 1677.03 15112.3 17806.9 18890.9 15342.9 15797.2 13891 FALSE TRUE FALSE 14699.19691 9756.33437 15331.63038 3904.210592 13216.77442 15610.06573 14164.19701 11849.6566 17166.51402 10412.60318 1.411673589 0.936973608 1.472410896 0.374950483 1.269305493 1.49915112 1.360293556 1.138010965 1.648628466 1 13.34604317 -5.980683602 24.98984199 1.344723217 1.040104223 0.143360903 0.324966327 432.1759175 559108.0455 0.096881475 0.109838981 1.05E-06 5.980683602 -0.304618993 TAHNSEAADLEESFNEHELEPS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 TAHNSEAADLEESFNEHELEPSSPK 25 0 A0A0D9SGE8;Q5JRC6;Q8IWS0-2 A0A0D9SGE8 PHF6 PHD finger protein 6 1 0 TAHNSEAADLEESFNEHELEPS(0.573)S(0.427)PK 119.5 7.30E-05 106950000 81111 72227 50063 16738 74868 55480 88636 64604 74963 45580 TRUE FALSE FALSE 75425.53776 66503.46947 69448.73433 38966.90989 65477.35732 48635.44168 66458.3353 49895.0795 81460.8532 34166.47132 2.207589336 1.946454138 2.032657504 1.140501444 1.916421415 1.42348448 1.94513313 1.460352139 2.384233725 1 15.06029364 -5.049548428 24.98391496 1.643420238 2.055156599 0.219764036 0.387068402 554.3952585 279543.1458 0.097684459 0.169198496 8.92E-06 5.049548428 0.411736362 TAHNSEAADLEESFNEHELEPSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TAHNSEAADLEESFNEHELEPSSPK 25 0 A0A0D9SGE8;Q5JRC6;Q8IWS0-2 A0A0D9SGE8 PHF6 PHD finger protein 6 1 0 TAHNSEAADLEESFNEHELEPS(0.003)S(0.997)PK;TAHNSEAADLEESFNEHELEPS(0.004)S(0.996)PK ; 368.71 1.85E-156 856390000 226770 429190 350060 130636 644580 260030 535450 448930 338900 369500 TRUE FALSE FALSE 277214.2042 479380.037 479561.7612 137772.3139 580403.3519 273644.7687 421046.7333 338829.2136 406914.1214 277390.4501 0.999364628 1.728177869 1.72883299 0.49667288 2.092369624 0.986496718 1.517884747 1.221488387 1.466936303 1 18.08155859 -10.67872687 2.459097576 0.940562222 1.367252818 0.058154172 0.433463023 29552710.1 23072012.3 10978959.17 0.105063116 2.10E-11 10.67872687 0.426690595 TAHNSEAADLEESFNEHELEPSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TAHNSEAADLEESFNEHELEPSSPK 25 0 A0A0D9SGE8;Q5JRC6;Q8IWS0-2 A0A0D9SGE8 PHF6 PHD finger protein 6 1 0 TAHNSEAADLEESFNEHELEPS(0.001)S(0.999)PK;TAHNSEAADLEESFNEHELEPS(0.031)S(0.969)PK ; 349.43 4.91E-142 553770000 444573 428200 274443 48567 403629 314883 437160 372680 393896 194091 TRUE FALSE FALSE 413410.7285 394267.8725 380714.6794 113066.4304 353002.0871 276035.937 327777.9442 287828.8995 428039.2224 145489.3503 2.841518831 2.70994318 2.616787268 0.777145751 2.426308774 1.897293076 2.252934277 1.978350298 2.942065667 1 17.15055403 -5.028438172 24.80481713 1.952735087 2.747640197 0.284089637 0.599737046 809.8810543 706408.2017 0.156823805 0.272392242 9.37E-06 5.028438172 0.79490511 TAHNSEADLEES(ph)FNEHELEPSS(ph)PK ddPTM_HeLa_A485_30min_R1 1 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 2 0 TAHNSEADLEES(1)FNEHELEPS(0.252)S(0.748)PK 96.134 0.0016697 244630000 116690 176980 153310 61588 243090 122280 202660 188290 141370 168640 TRUE FALSE FALSE 142647.2879 197676.2715 210025.7488 64952.39649 218887.1061 128682.3917 159360.0354 142111.5823 169741.6623 126601.1516 1.12674558 1.561409742 1.658956069 0.513047438 1.728950356 1.016439346 1.258756602 1.122514136 1.340759228 1 16.949931 -2.807534219 0.02889189 3.16E-06 2.814548193 0.053707203 0.335649878 3296.629671 10.23677732 364.5874485 672.9215164 0.001557635 2.807534219 2.81454503 TAHNSEADLEES(ph)FNEHELEPSS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 2 0 TAHNSEADLEES(1)FNEHELEPS(0.036)S(0.964)PK;TAHNSEADLEES(1)FNEHELEPS(0.056)S(0.944)PK ; 225.71 1.42E-38 506930000 252540 254700 158462 40568 272380 208778 272750 239214 204914 122470 TRUE FALSE FALSE 234838.2501 234516.6444 219822.7302 94444.35419 238215.5606 183021.0931 204505.0651 184750.1942 222676.1105 91802.71485 2.558075221 2.554571995 2.394512303 1.028775177 2.594864007 1.993634865 2.227658141 2.012469833 2.425593958 1 16.4862492 -10.87316508 2.60986023 0.448594618 2.181675086 0.398139301 0.441761537 19361529.54 12300522.98 66129532.59 0.11175567 1.34E-11 10.87316508 1.733080468 TAHNSEADLEESFNEHELEPS(ph)SPK ddPTM_HeLa_A485_30min_R1 2 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 0 TAHNSEADLEESFNEHELEPS(0.5)S(0.5)PK;TAHNSEADLEES(0.003)FNEHELEPS(0.523)S(0.474)PK ; 147.55 2.12E-09 508920000 117615 148736 114883 100564 184841 128696 188211 202578 114058 144587 TRUE FALSE FALSE 143778.051 166129.3814 157383.0024 106057.5567 166437.581 135434.3236 147998.1823 152895.4279 136948.3944 108544.1218 1.324604673 1.53052398 1.44994496 0.977091665 1.533363375 1.247735218 1.363484082 1.408601639 1.261684116 1 16.72792207 -8.095107444 4.763096509 1.000034442 1.353084826 0.3317308 0.151628528 0.6681531 31.18724874 0.143465462 0.037437671 8.03E-09 8.095107444 0.353050384 TAHNSEADLEESFNEHELEPS(ph)SPK ddPTM_HeLa_A486_30min_R1 2 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 0 TAHNSEADLEESFNEHELEPS(0.609)S(0.391)PK;TAHNSEADLEESFNEHELEPS(0.91)S(0.09)PK ; 179.01 1.79E-20 553020000 282700 264420 159739 40775 259210 195519 286930 271348 233695 169867 TRUE FALSE FALSE 262884.1899 243466.3962 221594.2188 94926.26065 226697.4648 171397.8537 215137.0792 209567.9839 253951.8708 127331.1976 2.064570152 1.912071832 1.740297924 0.745506698 1.780376444 1.34607902 1.689586553 1.645849469 1.994419872 1 16.95822641 -5.004219551 22.20905768 1.482813565 1.947788086 0.270097537 0.350707976 60.12679112 316504.7738 0.091974476 0.183424222 9.90E-06 5.004219551 0.464974521 TAHNSEADLEESFNEHELEPSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 0 TAHNSEADLEESFNEHELEPS(0.16)S(0.84)PK;TAHNSEADLEES(0.026)FNEHELEPS(0.263)S(0.71)PK ; 143.64 2.58E-09 3393740000 245448 362125 255403 147320.2 535395 249299 384696 474611 296313 381611 TRUE FALSE FALSE 300047.0608 404472.3687 349887.1979 155367.9295 482089.1939 262351.9102 302502.5569 358211.9081 355780.3012 286482.4007 1.047349017 1.411857649 1.221321788 0.542329753 1.682788167 0.915769728 1.055920211 1.250380153 1.241892347 1 18.12808699 -11.50845696 1.605689747 0.000188832 1.152623411 0.024799291 0.286271659 2789448.727 190589.8295 10089184.19 0.070788744 3.10E-12 11.50845696 1.15243458 TAHNSEADLEESFNEHELEPSS(ph)PK ddPTM_HeLa_A486_30min_R1 3 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 0 TAHNSEADLEESFNEHELEPS(0.055)S(0.945)PK;TAHNSEADLEESFNEHELEPS(0.024)S(0.976)PK;TAHNSEADLEESFNEHELEPS(0.002)S(0.998)PK ;; 329.86 8.61E-123 4868870000 963938 1017073 640900 84336.3 1042324 704519 1084768 880323 866441 442643 TRUE FALSE FALSE 896370.924 936476.4314 889073.6439 196339.1685 911586.0046 617602.6088 813347.5729 679892.6702 941544.8035 331802.3117 2.701521034 2.822392727 2.679528179 0.591735385 2.747376894 1.861357161 2.451301707 2.049089612 2.837668004 1 18.33996441 -5.037235896 24.99978844 1.999845204 2.759209738 0.22769142 0.669025513 823.1819477 552674.9671 0.174124982 0.301705787 9.18E-06 5.037235896 0.759364534 TAIT(ph)TPNFK ddPTM_HeLa_A485_30min_R1 1 TAITTPNFK 9 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 TAIT(0.5)T(0.5)PNFK 137.78 0.00078471 752850000 1045200 889410 690220 1241300 1399800 1025300 1379100 1493400 873110 1820700 TRUE FALSE FALSE 1277701.134 993418.7627 945561.1005 1309109.076 1260430.997 1078983.123 1084444.019 1127141.308 1048335.168 1366832.998 0.9347895 0.726803322 0.691789781 0.957768124 0.922154352 0.789403771 0.793399062 0.82463718 0.766981168 1 20.38240555 -11.49916032 2.082579761 2.956124531 0.821445128 0.280685864 0.08492973 4655753.319 332295.5093 42967412.16 0.022410932 3.17E-12 11.49916032 -2.134679403 TAIT(ph)TPNFKK ddPTM_HeLa_A485_30min_R1 1 TAITTPNFKK 10 1 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 T(0.001)AIT(0.5)T(0.5)PNFKK 64.121 0.019047 545630000 1431700 1127900 685220 1488900 1780200 1566400 2148500 2573900 1104900 2592600 TRUE FALSE FALSE 1750176.726 1259798.094 938711.3924 1570234.837 1602957.037 1648414.282 1689455.423 1942646.989 1326643.295 1946312.533 0.899226972 0.647274306 0.482302496 0.806774251 0.823586659 0.846942232 0.868028847 0.998116672 0.681618842 1 20.89231196 -5.504467528 20.97342044 0.863560604 0.668563392 0.317430013 0.126518748 107.6241765 122600.5502 0.035547219 0.051390536 3.13E-06 5.504467528 -0.194997212 TAITT(ph)PNFK ddPTM_HeLa_A485_30min_R1 2 TAITTPNFK 9 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 TAIT(0.131)T(0.869)PNFK;TAIT(0.019)T(0.981)PNFK ; 197.73 5.17E-09 685400000 2327820 2027760 1529740 2714510 3102200 2335980 3090350 3270950 1894410 3974100 TRUE FALSE FALSE 2845635.528 2264888.893 2095654.484 2862796.808 2793334.076 2458288.301 2430071.477 2468744.384 2274600.71 2983430.008 0.953813403 0.759156034 0.702431255 0.959565601 0.936282758 0.823980551 0.814522704 0.827485269 0.762411286 1 21.5085405 -10.0578491 4.28063591 1.000013921 0.836540316 0.255443651 0.083084264 116181679.3 200855075.1 23802.89799 0.021516046 8.75E-11 10.0578491 -0.163473605 TAITT(ph)PNFK ddPTM_HeLa_A486_30min_R1 3 TAITTPNFK 9 0 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 TAIT(0.093)T(0.906)PNFK;TAIT(0.081)T(0.919)PNFK;TAIT(0.086)T(0.914)PNFK ;; 123.67 0.0015226 1919160000 4472860 4452310 2642460 1695270 4426640 4607370 5451660 5047940 3525520 5264960 TRUE FALSE FALSE 4159335.612 4099492.741 3665691.28 3946674.234 3871409.534 4038959.534 4087597.006 3898634.258 3831114.912 3946579.747 1.053908923 1.0387457 0.928827368 1.000023942 0.980953074 1.023407556 1.035731511 0.987851382 0.970743063 1 21.91217147 -4.547208132 24.99918913 0.99260513 1.0501182 0.395026065 0.027634558 198.2090681 203665.106 0.007329898 0.019394417 2.84E-05 4.547208132 0.05751307 TAITT(ph)PNFKK ddPTM_HeLa_A486_30min_R1 1 TAITTPNFKK 10 1 Q9BXS6-7;Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;H0YMD2 Q9BXS6-7 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 TAIT(0.229)T(0.77)PNFKK 69.229 0.012537 553970000 2018300 1651300 786070 789240 1749700 1903800 2480200 2276800 1325500 2538400 TRUE FALSE FALSE 1876827.593 1520444.974 1090457.356 1837390.606 1530236.311 1668928.512 1859627.727 1758422.342 1440395.407 1902768.118 0.986366954 0.799070028 0.573089987 0.965640841 0.804215867 0.877105569 0.977327563 0.924139061 0.75699997 1 20.85966833 -5.933040494 1.495084711 0.905357502 0.802747187 0.093440591 0.122022752 0.941363343 4.340811405 0.049147094 0.058024581 1.17E-06 5.933040494 -0.102610315 TAKPFPGSVNQPATPFS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 TAKPFPGSVNQPATPFSPTR 20 1 H0Y9Y3;Q9UMS6-5;Q9UMS6;Q9UMS6-3;Q9UMS6-4;Q9UMS6-2 H0Y9Y3 SYNPO2 Synaptopodin-2 1 0 TAKPFPGSVNQPATPFS(0.993)PT(0.006)R 184.53 2.57E-19 213640000 173010 196850 158300 230650 257610 205900 291010 320070 168050 297100 TRUE FALSE FALSE 211495.4776 219869.8951 216861.7574 243249.8255 231961.4439 216680.6056 228833.3362 241572.3306 201776.0936 223038.4377 0.948246768 0.985793738 0.972306655 1.090618406 1.040006585 0.971494456 1.025981613 1.083097304 0.904669597 1 17.76693284 -5.052972172 24.99812128 1.020427278 0.970027368 0.151749091 0.0511889 557.1698697 262933.3968 0.013580422 0.023522239 8.85E-06 5.052972172 -0.05039991 TAKPFPGSVNQPATPFS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 TAKPFPGSVNQPATPFSPTR 20 1 H0Y9Y3;Q9UMS6-5;Q9UMS6;Q9UMS6-3;Q9UMS6-4;Q9UMS6-2 H0Y9Y3 SYNPO2 Synaptopodin-2 1 0 TAKPFPGSVNQPAT(0.019)PFS(0.963)PT(0.018)R 110.36 1.32E-05 200090000 281740 241170 147320 119380 234020 231170 298880 287440 206560 311330 TRUE FALSE FALSE 261991.4809 222058.8109 204366.2494 277922.6731 204667.0295 202650.5958 224097.0628 221996.1868 224464.7871 233370.9416 1.122639687 0.951527253 0.875714208 1.190905223 0.877003058 0.868362592 0.96026121 0.951258907 0.961836918 1 17.83226541 -4.260176682 24.03662026 0.957316039 1.122639749 0.235377492 0.088037997 95.34423015 1814599.438 0.021830489 0.131415582 5.49E-05 4.260176682 0.16532371 TALATS(ph)PITVGDLGIVR ddPTM_HeLa_A486_30min_R1 1 TALATSPITVGDLGIVR 17 0 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 1 0 TALAT(0.028)S(0.969)PIT(0.002)VGDLGIVR 104.95 0.00021796 28513000 66378 71897 52659 27958 72796 68751 80287 74622 67368 84246 TRUE FALSE FALSE 61725.24498 66199.61988 73049.97506 65087.63692 63665.24688 60269.20063 60198.34341 57632.19959 73207.51248 63150.25325 0.977434639 1.048287481 1.156764562 1.030678953 1.008155053 0.954377814 0.953255772 0.912620245 1.159259207 1 15.9465009 -5.702357184 3.37005788 0.988189576 1.063415461 0.118125901 0.073737583 0.43574711 10.01714152 0.023114589 0.029704386 1.98E-06 5.702357184 0.075225885 TALIHDGLAR ddPTM_HeLa_A485_30min_R1 4 TALIHDGLAR 10 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ;;; ;;; 143.89 2.03E-05 389850000 215843 279370 258106 238106 358383 266283 366265 361701 241126 335480 FALSE FALSE TRUE 263856.5307 312039.8913 353590.1501 251113.1279 322701.1302 280225.1661 288009.4906 272993.2626 289517.7765 251851.0101 1.047669138 1.238986063 1.403965583 0.997070164 1.281317594 1.112662467 1.143570918 1.08394746 1.149559719 1 17.94221099 -7.917227156 0.393163993 0.993592157 1.208522347 0.189576268 0.110860205 2.129640946 0.914995236 0.167522371 0.095791812 1.21E-08 7.917227156 0.21493019 TALIHDGLAR ddPTM_HeLa_A486_30min_R1 2 TALIHDGLAR 10 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ; ; 166.55 1.39E-06 121030000 263510 267480 231110 97281 403190 283800 304440 333490 254300 316030 FALSE FALSE TRUE 245039.3098 246283.9107 320601.9813 226475.0843 352618.1506 248787.6415 228265.892 257561.607 276342.9288 236894.031 1.034383639 1.039637468 1.353356098 0.956018534 1.488505848 1.050206459 0.963578065 1.087243971 1.166525503 1 17.85388232 TALINS(ph)TGEEVAMR ddPTM_HeLa_A486_30min_R1 3 TALINSTGEEVAMR 14 0 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 TALINS(0.752)T(0.248)GEEVAMR;TALINS(0.963)T(0.037)GEEVAMR;TALINS(0.942)T(0.058)GEEVAMR ;; 164.97 6.34E-12 140838000 272249 305493 224424 103373 310629 270419 308996 318871 244496 325987 TRUE FALSE FALSE 253165.751 281284.6221 311326.9831 240657.5682 271667.0143 237057.4532 231681.9326 246271.0342 265689.1101 244357.7334 1.036045586 1.15111815 1.27406233 0.984857589 1.11175943 0.97012462 0.94812605 1.007829917 1.087295689 1 17.89863524 -5.288516635 24.99670843 1.015325821 1.153479667 0.441578304 0.071129442 669.5254935 618079.2737 0.020545178 0.030481248 5.15E-06 5.288516635 0.138153846 TALLSLFGIPLWYHSQSPR ddPTM_HeLa_A485_30min_R1 1 TALLSLFGIPLWYHSQSPR 19 0 Q9UH99-3;Q9UH99;Q9UH99-2;B0QY60 Q9UH99-3 SUN2 SUN domain-containing protein 2 0 0 180.14 4.06E-18 10631000 7138.5 7830.5 5284.9 4662.5 7824.7 5502.2 8557.3 13315 5513.6 16963 FALSE FALSE TRUE 8726.434697 8746.208859 7240.004433 4917.200569 7045.645394 5790.286684 6728.962948 10049.47537 6620.128946 12734.43628 0.68526274 0.68681555 0.568537489 0.386134137 0.553275013 0.454695171 0.528406818 0.789157459 0.519860385 1 13.63644748 -9.030484872 0.691256311 1.018049714 0.558574244 0.558868621 0.112948603 4.049304345 2.074909105 0.328346128 0.044345093 9.32E-10 9.030484872 -0.45947547 TALLSLFGIPLWYHSQSPR ddPTM_HeLa_A486_30min_R1 1 TALLSLFGIPLWYHSQSPR 19 0 Q9UH99-3;Q9UH99;Q9UH99-2;B0QY60 Q9UH99-3 SUN2 SUN domain-containing protein 2 0 0 176.21 5.27E-18 4871300 4296.6 4436.4 3212 970.43 4557.4 3189.7 4214.1 3495.4 4602.3 4272.5 FALSE FALSE TRUE 3995.430528 4084.843507 4455.77242 2259.210083 3985.768396 2796.187244 3159.687608 2699.573724 5001.23107 3202.638191 1.247543522 1.275462061 1.39128186 0.705421577 1.244526593 0.873088709 0.986588999 0.842921855 1.561597274 1 11.64504511 -5.220337375 24.99970431 1.02456481 1.301832494 0.236655333 0.225448056 714.5894298 434637.7887 0.058101545 0.100633472 6.02E-06 5.220337375 0.277267685 TALPTSGSSAGELELLAGEVPARS(ph)PGAFDMSGVR ddPTM_HeLa_A485_30min_R1 1 TALPTSGSSAGELELLAGEVPARSPGAFDMSGVR 34 1 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 TALPTSGSSAGELELLAGEVPARS(1)PGAFDMSGVR 200.3 1.89E-29 140420000 15242 19744 23870 17184 32220 21858 32746 42407 19191 26685 TRUE FALSE FALSE 18632.53032 22052.88905 32700.50631 18122.71841 29012.06367 23002.45108 25749.54959 32006.61676 23042.45767 20032.9206 0.930095551 1.100832449 1.632338438 0.904646844 1.448219371 1.148232529 1.285361735 1.597700974 1.150229571 1 14.29008515 -4.529403515 24.99637764 1.287250701 0.972779635 0.183872283 0.22587626 197.9615464 758392.4308 0.053783951 0.143067082 2.96E-05 4.529403515 -0.314471066 TALPTSGSSAGELELLAGEVPARS(ph)PGAFDMSGVR ddPTM_HeLa_A486_30min_R1 1 TALPTSGSSAGELELLAGEVPARSPGAFDMSGVR 34 1 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 TALPT(0.001)S(0.002)GS(0.008)S(0.008)AGELELLAGEVPARS(0.982)PGAFDMSGVR 77.958 0.00029683 58590000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 TALRHPPFSPPEPPLS(ph)SPASQHK ddPTM_HeLa_A485_30min_R1 1 TALRHPPFSPPEPPLSSPASQHK 23 1 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 TALRHPPFSPPEPPLS(0.49)S(0.49)PAS(0.019)QHK 85.982 0.001571 673950000 198920 280130 197060 135270 369700 282110 437880 443810 161850 172310 TRUE FALSE FALSE 243169.0677 312888.7667 269960.6944 142659.4576 332891.3699 296880.8434 344323.3608 334964.9016 194331.8104 129356.2881 1.87983956 2.418813737 2.086954552 1.102841305 2.573445595 2.295063098 2.661821592 2.589475212 1.502298908 1 16.98099066 TALRHPPFSPPEPPLS(ph)SPASQHK ddPTM_HeLa_A486_30min_R1 2 TALRHPPFSPPEPPLSSPASQHK 23 1 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 TALRHPPFSPPEPPLS(0.788)S(0.209)PAS(0.003)QHK;TALRHPPFSPPEPPLS(0.498)S(0.498)PAS(0.004)QHK ; 103.16 0.00026536 658180000 695530 435190 280620 188696 595330 352790 610190 577320 336630 527730 TRUE FALSE FALSE 646776.9387 400703.9595 389283.5793 439293.8242 520658.1602 309266.3567 457514.0081 445876.8388 365809.3594 395582.9731 1.63499691 1.012945417 0.98407567 1.110497302 1.3161794 0.781798959 1.156556372 1.127138601 0.924734845 1 18.5936208 -4.258963407 24.62663432 1.053688304 1.634997165 0.623716728 0.137130151 119.981343 1193274.353 0.033261361 0.217257667 5.51E-05 4.258963407 0.581308861 TALRHPPFSPPEPPLSS(ph)PASQHK ddPTM_HeLa_A485_30min_R1 1 TALRHPPFSPPEPPLSSPASQHK 23 1 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 TALRHPPFSPPEPPLS(0.164)S(0.833)PAS(0.003)QHK 128.27 1.81E-06 489120000 300150 494170 281620 174470 482570 409500 636600 753790 347320 336890 TRUE FALSE FALSE 366917.332 551958.8828 385802.9572 184000.8543 434523.6364 430940.7868 500585.2095 568921.8206 417023.9382 252909.523 1.450784959 2.182436139 1.525458403 0.727536283 1.71809915 1.703932623 1.979305498 2.249507309 1.648905637 1 17.94826184 -5.982023916 24.99653807 1.799766811 1.488261208 0.05208806 0.443783758 624.7231573 868700.5971 0.142085387 0.161081315 1.04E-06 5.982023916 -0.311505603 TAMPS(ph)PGVSQNK ddPTM_HeLa_A485_30min_R1 3 TAMPSPGVSQNK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK ;; 186.13 5.39E-13 414940000 1201850 826610 721390 1594240 1311800 795560 1161650 834060 744780 1745070 TRUE FALSE FALSE 1469197.386 923274.8489 988262.1805 1681329.294 1181192.586 837214.2914 913453.9877 629505.4772 894250.5145 1310056.165 1.12147664 0.704759745 0.754366269 1.283402452 0.901635073 0.63906748 0.697263226 0.480517931 0.682604715 1 20.32119723 -6.20733105 5.442034881 0.667148721 0.949317535 0.286898211 0.196919813 0.26497385 17.60781544 0.066591882 0.065909183 6.20E-07 6.20733105 0.282168813 TAMPS(ph)PGVSQNK ddPTM_HeLa_A486_30min_R1 4 TAMPSPGVSQNK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK;TAMPS(1)PGVSQNK ;;; 201.08 4.67E-17 905509000 1899860 1865440 994320 654594 1483160 1879870 2002980 1915760 1527550 2043650 TRUE FALSE FALSE 1766689.625 1717615.741 1379347.333 1523927.913 1297128.243 1647950.753 1501813.219 1479583.269 1659959.264 1531906.738 1.153261867 1.121227355 0.90041208 0.994791573 0.846741 1.075751357 0.980355515 0.96584422 1.083590288 1 20.54689704 -4.65289739 6.683780059 0.979060723 1.144244104 0.466300787 0.067118487 0.169181248 9.219145639 0.016727602 0.045026906 2.22E-05 4.65289739 0.165183382 TAMRVS(ph)PHHPAPTPNPR ddPTM_HeLa_A485_30min_R1 1 TAMRVSPHHPAPTPNPR 17 1 A8MZI9;Q01196-7;Q01196-3;Q01196-4;Q01196-11;Q01196;Q01196-9;Q01196-10;Q01196-2;Q01196-8 A8MZI9 RUNX1 Runt-related transcription factor 1 1 0 T(0.21)AMRVS(0.79)PHHPAPTPNPR 107.47 0.0004356 107640000 30811 43979 37572 30878 53387 37890 53586 63758 33260 45486 TRUE FALSE FALSE 37664.80065 49121.96148 51471.4463 32564.78695 48071.60283 39873.86181 42136.91334 48121.25053 39934.97692 34147.17731 1.103013591 1.438536516 1.507341173 0.953659703 1.407776766 1.167705941 1.233979399 1.409230699 1.169495697 1 15.05947871 -8.007906338 23.630221 0.99999999 1.279733062 0.219686727 0.161983301 227.1020203 678759.9883 0.151222694 0.039045532 9.82E-09 8.007906338 0.279733072 TANS(ph)PGSGARPDPVR ddPTM_HeLa_A485_30min_R1 3 TANSPGSGARPDPVR 15 1 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 T(0.035)ANS(0.965)PGSGARPDPVR;T(0.002)ANS(0.997)PGS(0.001)GARPDPVR;T(0.086)ANS(0.893)PGS(0.02)GARPDPVR ;; 123.19 1.49E-05 1698320000 1151000 1109080 1185000 1573410 1819640 1151240 1481620 1250190 1214640 2083610 TRUE FALSE FALSE 1407035.979 1238777.258 1623380.812 1659361.404 1638470.252 1211517.146 1165059.783 943578.9423 1458407.107 1564204.373 0.899521829 0.791953583 1.037831654 1.060834142 1.047478374 0.774526121 0.744825806 0.603232518 0.932363527 1 20.57699759 -6.276490877 24.13870514 0.782056366 0.966859894 0.26411799 0.126097815 627.4160633 1006209.17 0.045433709 0.040242803 5.29E-07 6.276490877 0.184803528 TANS(ph)PGSGARPDPVR ddPTM_HeLa_A486_30min_R1 4 TANSPGSGARPDPVR 15 1 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 T(0.022)ANS(0.975)PGS(0.003)GARPDPVR;T(0.05)ANS(0.95)PGSGARPDPVR;T(0.185)ANS(0.812)PGS(0.003)GARPDPVR;T(0.238)ANS(0.754)PGS(0.007)GARPDPVR ;;; 127.17 1.16E-05 2427940000 1513630 1835780 1313710 755160 2089780 1781030 2084940 1992560 1680970 2022030 TRUE FALSE FALSE 1407532.353 1690306.107 1822413.694 1758050.644 1827660.306 1561304.627 1563265.96 1538897.585 1826677.833 1515700.527 0.928634865 1.115197941 1.202357367 1.15989314 1.205818876 1.030087804 1.031381815 1.015304513 1.205170679 1 20.5315533 -6.292343781 24.91692663 1.055782545 1.128508643 0.116833668 0.089924855 1448.202743 1167620.453 0.032498126 0.0286633 5.10E-07 6.292343781 0.072726097 TAPAAPAEDAVAAAAAAPSEPS(ph)EPSRPSPQPKPR ddPTM_HeLa_A486_30min_R1 1 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPS(0.44)EPS(0.483)EPS(0.04)RPS(0.036)PQPKPR 67.283 0.00098761 501730000 24749 29576 24120 9514.4 23368 26067 33782 31745 21278 41096 TRUE FALSE FALSE 23014.2229 27232.29005 33459.90996 22150.00403 20436.96754 22851.11857 25329.38629 24517.35649 23122.39417 30805.29411 0.747086615 0.884013311 1.086174014 0.719032383 0.663423873 0.74179193 0.822241339 0.795881266 0.750598066 1 14.91089069 TAPAAPAEDAVAAAAAAPSEPSEPS(ph)RPSPQPKPR ddPTM_HeLa_A485_30min_R1 2 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPSEPS(0.004)EPS(0.59)RPS(0.406)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.008)EPS(0.104)EPS(0.508)RPS(0.38)PQPKPR ; 213.22 2.55E-30 5748600000 2028480 1995730 1453070 2326010 2492420 2173510 3522610 3533800 1847960 3812420 TRUE FALSE FALSE 2479708.378 2229113.263 1990621.06 2453074.037 2244265.913 2287311.623 2769975.596 2667130.009 2218828.622 2862053.856 0.866408706 0.778850914 0.695521874 0.857102682 0.784145242 0.799185388 0.967827908 0.931893718 0.775257466 1 21.44861939 -6.738545058 21.08904327 0.91306902 0.793602616 0.418858748 0.070137698 39.63815316 36512.08259 0.026563191 0.020543871 1.83E-07 6.738545058 -0.119466404 TAPAAPAEDAVAAAAAAPSEPSEPS(ph)RPSPQPKPR ddPTM_HeLa_A486_30min_R1 2 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPS(0.028)EPS(0.112)EPS(0.43)RPS(0.43)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.01)EPS(0.101)EPS(0.444)RPS(0.444)PQPKPR ; 157.19 1.81E-10 4660900000 2628490 2648790 1682050 1271930 2731720 2888260 3834260 3557180 2342340 3914800 TRUE FALSE FALSE 2444246.425 2438890.234 2333384.807 2961117.32 2389082.205 2531935.847 2874887.593 2747287.767 2545375.917 2934508.599 0.832932105 0.831106862 0.795153508 1.009067522 0.814133653 0.862814254 0.979682797 0.936200278 0.867394261 1 21.4846875 -1 0.091701898 1.061021806 0.380155428 0.346238283 0.062159025 174.6284778 1.151188553 1.091704912 14.95207773 0.1 1 -0.680866378 TAPAAPAEDAVAAAAAAPSEPSEPSRPS(ph)PQPKPR ddPTM_HeLa_A485_30min_R1 4 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPSEPS(0.003)EPS(0.052)RPS(0.945)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.032)EPS(0.026)EPS(0.017)RPS(0.926)PQPKPR;TAPAAPAEDAVAAAAAAPSEPS(0.009)EPS(0.009)RPS(0.982)PQPKPR;TAPAAPAEDAVAAAAAAPSEPS(0.008)EPS(0.053)RPS(0.939)PQPKPR ;;; 286.24 1.00E-78 7156520000 2287106 2178071 1602224 2619617 2767668 2567233 3685430 3619995 2051977 4109186 TRUE FALSE FALSE 2795864.839 2432777.457 2194953.332 2762720.043 2492109.256 2701649.35 2898007.773 2732185.55 2463789.962 3084841.554 0.906323644 0.788623148 0.71152871 0.895579236 0.807856485 0.875782209 0.939434886 0.885680999 0.79867634 1 21.55676496 -6.378165897 4.146447331 0.897712715 0.818097008 0.242300117 0.069549216 0.372405961 10.85550292 0.025469581 0.022210458 4.19E-07 6.378165897 -0.079615707 TAPAAPAEDAVAAAAAAPSEPSEPSRPS(ph)PQPKPR ddPTM_HeLa_A486_30min_R1 2 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPS(0.009)EPS(0.038)EPS(0.171)RPS(0.782)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.002)EPS(0.008)EPS(0.175)RPS(0.815)PQPKPR ; 146.48 8.89E-10 4831100000 2547400 2549500 1610120 1381470 2634210 2978360 3841200 3621400 2480310 3787900 TRUE FALSE FALSE 2368840.415 2347468.335 2233601.585 3216131.976 2303802.819 2610920.225 2880091.132 2796886.275 2695305.268 2839385.185 0.834279346 0.826752336 0.786649728 1.132686045 0.811373825 0.919537173 1.014336183 0.985032355 0.94925665 1 21.43714714 -5.205279 24.99998898 0.965289895 0.816979529 0.464524868 0.077056378 271.1990977 120724.6372 0.020538468 0.035573655 6.23E-06 5.205279 -0.148310366 TAPLPPASQTTPLQMALNGKPAPPPQS(ph)QSPEVEQLGR ddPTM_HeLa_A485_30min_R1 1 TAPLPPASQTTPLQMALNGKPAPPPQSQSPEVEQLGR 37 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 TAPLPPASQTTPLQMALNGKPAPPPQS(0.5)QS(0.5)PEVEQLGR 84.408 0.00010001 221860000 48519 57651 39605 50173 71060 52129 69845 82022 47297 63667 TRUE FALSE FALSE 59311.88416 64392.78295 54256.5376 52913.82395 63985.01689 54858.39383 54922.04517 61905.97589 56789.07407 47795.9886 1.240938537 1.347242412 1.135169272 1.107076671 1.338711025 1.147761464 1.149093193 1.295212793 1.188155653 1 15.54460192 TAPLPPASQTTPLQMALNGKPAPPPQS(ph)QSPEVEQLGR ddPTM_HeLa_A486_30min_R1 1 TAPLPPASQTTPLQMALNGKPAPPPQSQSPEVEQLGR 37 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 TAPLPPASQTTPLQMALNGKPAPPPQS(0.5)QS(0.5)PEVEQLGR 95.099 4.34E-05 149790000 213040 203290 129580 84777 219970 234710 258500 247570 167900 265160 TRUE FALSE FALSE 198106.9961 187180.56 179756.8463 197365.1404 192379.3115 205753.8666 193820.5659 191203.7154 182453.7072 198762.2101 0.996703529 0.941731127 0.904381402 0.99297115 0.96788676 1.035175985 0.975137909 0.961972174 0.91794968 1 17.60068396 -4.213726027 21.16746393 0.966535755 0.996704364 0.057964653 0.036695852 17167.59648 7614855.486 0.009585429 4.138063229 6.11E-05 4.213726027 0.030168609 TAPPALPTGYDS(ph)EEEEESRPMSYDEK ddPTM_HeLa_A485_30min_R1 3 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;A0A140T9I1;A0A0G2JHN8 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPT(0.014)GY(0.001)DS(0.979)EEEEES(0.005)RPMS(0.001)YDEK ;; 274.96 5.10E-76 1562400000 337080 266396 242584 495590 390400 293245 418930 348381 337422 637920 TRUE FALSE FALSE 412062.2831 297548.6949 332325.9164 522662.8268 351530.4052 308598.8548 329422.1832 262940.0135 405139.5004 478898.284 0.860438003 0.621319192 0.693938415 1.091385883 0.73403981 0.644393319 0.687875054 0.549051902 0.84598236 1 18.86935974 -5.979567141 24.99799256 0.710959199 0.808870422 0.025026552 0.162423132 697.5822224 853432.6986 0.050423876 0.057169724 1.05E-06 5.979567141 0.097911223 TAPPALPTGYDS(ph)EEEEESRPMSYDEK ddPTM_HeLa_A486_30min_R1 3 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;A0A140T9I1;A0A0G2JHN8 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.001)GYDS(0.999)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK;TAPPALPTGYDS(1)EEEEESRPMSYDEK ;; 260.21 1.99E-62 1952340000 510062 503455 274242 186249 434073 624763 688425 633740 483326 678441 TRUE FALSE FALSE 474309.2878 463559.3922 380435.8469 433597.0845 379627.5168 547686.0932 516173.7836 489451.2364 525221.0868 508554.9577 0.932660828 0.911522708 0.748072241 0.85260615 0.746482776 1.076945736 1.014981323 0.962435287 1.03277154 1 18.95604416 -6.2673158 24.99991329 1.014926144 0.838124177 0.6774861 0.061793798 308.7983835 1313709.845 0.022327335 0.020214923 5.40E-07 6.2673158 -0.176801966 TAPPALPTGYDS(ph)EEEEESRPMSYDEKR ddPTM_HeLa_A485_30min_R1 9 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;A0A140T9I1;A0A0G2JHN8 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPTGYDS(0.987)EEEEES(0.011)RPMS(0.002)YDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPTGYDS(0.999)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPT(0.012)GYDS(0.986)EEEEES(0.002)RPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPT(0.019)GYDS(0.981)EEEEESRPMSYDEKR;TAPPALPTGY(0.007)DS(0.992)EEEEESRPMSYDEKR ;;;;;;;; 229.28 5.41E-39 14713910000 3139727 3352434 2538594 3526494 4657290 3818084 5633300 6099860 2935938 4842230 TRUE FALSE FALSE 3838148.439 3744471.994 3477725.56 3719137.438 4193593.855 4017992.974 4429699.435 4603859.771 3525153.827 3635151.176 1.055842867 1.030073252 0.956693516 1.023103926 1.153622959 1.10531661 1.21857365 1.266483716 0.96974064 1 21.79358393 -5.732681986 7.574565715 1.136605825 1.012605942 0.232990526 0.087610996 0.240777644 48.62868325 0.025775302 0.032727893 1.85E-06 5.732681986 -0.123999883 TAPPALPTGYDS(ph)EEEEESRPMSYDEKR ddPTM_HeLa_A486_30min_R1 10 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 P25440-2;P25440;A0A0G2JK44;P25440-3;P25440-4;A0A140T9E9;H0Y6K2;A0A140T9I1;A0A0G2JHN8 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.002)GYDS(0.997)EEEEES(0.002)RPMSYDEKR;TAPPALPTGYDS(0.999)EEEEES(0.001)RPMSYDEKR;TAPPALPTGYDS(0.999)EEEEESRPMSYDEKR;TAPPALPT(0.001)GYDS(0.999)EEEEESRPMSYDEKR;TAPPALPTGYDS(0.932)EEEEES(0.023)RPMS(0.044)YDEKR;TAPPALPTGYDS(0.999)EEEEES(0.001)RPMS(0.001)YDEKR;TAPPALPT(0.001)GYDS(0.999)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR;TAPPALPTGYDS(1)EEEEESRPMSYDEKR ;;;;;;;;; 288.44 3.23E-78 11175840000 3968261 3495564 2297891 1516750 3883725 3693901 4715603 4622880 2886488 4808660 TRUE FALSE FALSE 3690106.396 3218562.778 3187695.935 3531070.652 3396591.996 3238185.051 3535709.253 3570351.141 3136691.104 3604540.237 1.023738439 0.892919087 0.884355764 0.979617488 0.942309358 0.898362853 0.980904365 0.990514991 0.870205601 1 21.78138382 -6.785691818 24.99783228 0.959615805 0.934686818 0.04641208 0.05161132 840.9234532 866760.6863 0.021291936 0.014363339 1.64E-07 6.785691818 -0.024928987 TAPPAS(ph)PEAR ddPTM_HeLa_A485_30min_R1 4 TAPPASPEAR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR ;;; 171.67 2.29E-07 15992570000 4611040 5812980 5229470 4159310 6635280 5255350 6193320 6317040 4903260 5762080 TRUE FALSE FALSE 5636749.94 6492757.445 7164068.569 4386522.573 5974648.225 5530512 4870066.587 4767776.035 5887299.307 4325699.499 1.303084031 1.500972836 1.656164181 1.014060864 1.381198168 1.278524317 1.125844869 1.102197699 1.361005153 1 22.04450202 -5.417789425 0.208514449 0.994205173 1.694222995 0.321853038 0.167065444 9.436989349 0.619980473 0.412677761 1.791543383 3.82E-06 5.417789425 0.700017822 TAPPAS(ph)PEAR ddPTM_HeLa_A486_30min_R1 7 TAPPASPEAR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR ;;;;;; 179.2 1.72E-09 14371820000 4839210 5546390 4537310 1557065 6189850 4932010 5371920 5324430 4811770 4629530 TRUE FALSE FALSE 4500006.369 5106873.857 6294277.945 3624926.01 5413461.295 4323548.751 4027808.798 4112173.52 5228858.098 3470265.555 1.296732569 1.471608952 1.813774147 1.044567326 1.55995592 1.245884121 1.160662991 1.184973731 1.506760222 1 21.72661464 -5.971499036 1.054978375 1.224740033 1.479197421 0.179573686 0.219349436 0.913479331 2.176424674 0.104842628 0.126874163 1.07E-06 5.971499036 0.254457388 TAPRS(ph)PDAR ddPTM_HeLa_A486_30min_R1 1 TAPRSPDAR 9 1 Q86XP1-2;Q86XP1;A0A0D9SFR6;Q86XP1-5;Q86XP1-3 Q86XP1-2 DGKH Diacylglycerol kinase eta 1 0 T(0.078)APRS(0.922)PDAR 68.536 0.0077261 428620000 221750 188890 236080 111920 335170 262110 288400 293570 231280 300400 TRUE FALSE FALSE 206206.4701 173921.6685 327496.4984 260555.4161 293129.8533 229773.5331 216239.2696 226730.5196 251327.5366 225177.8847 0.91574921 0.772374555 1.454390154 1.157109262 1.30177017 1.020408969 0.960304205 1.006895148 1.116128864 1 17.78070562 -6.463526041 24.99931109 1.016969538 1.125511689 0.070819279 0.179545434 773.8779542 325956.3511 0.067769626 0.059767037 3.44E-07 6.463526041 0.108542151 TAPS(ph)PLVEAK ddPTM_HeLa_A486_30min_R1 1 TAPSPLVEAK 10 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6;A0A0A0MS48;Q8TEH3-4;Q8TEH3-3;Q8TEH3-5;Q8TEH3-2 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 T(0.002)APS(0.998)PLVEAK 143.22 6.05E-06 198010000 553940 577730 275590 184510 516790 603630 716820 658920 442910 744200 TRUE FALSE FALSE 515111.6665 531948.5707 382305.8286 429548.6046 451969.3793 529160.2679 537464.0543 508898.3001 481301.7954 557847.4761 0.923391588 0.953573501 0.68532322 0.770010842 0.810202428 0.948575176 0.963460583 0.912253478 0.862783854 1 19.0895112 -6.261129707 24.99494722 0.933558336 0.824245125 0.329574933 0.077453709 37.76739671 3048425.256 0.02867679 0.026993165 5.48E-07 6.261129707 -0.109313211 TAPSS(ph)PLTSPSDTR ddPTM_HeLa_A485_30min_R1 1 TAPSSPLTSPSDTR 14 0 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 0 TAPS(0.178)S(0.807)PLT(0.014)S(0.002)PSDTR 135.24 1.12E-05 405730000 130910 160300 124260 92653 208450 113290 131130 148730 117060 156900 TRUE FALSE FALSE 160030.4779 179045.6906 170228.9449 97714.39878 187695.9861 119221.6892 103113.0043 112253.7343 140552.8683 117787.7175 1.35863468 1.520070975 1.44521813 0.829580544 1.593510682 1.012174204 0.875413892 0.953017315 1.193272705 1 16.84582958 -5.490365033 0.67370568 0.998930174 1.501283822 0.348067274 0.216154851 1.113384612 0.971400148 0.129048064 0.344272622 3.23E-06 5.490365033 0.502353649 TAPTALGITLSSS(ph)PTSTPELR ddPTM_HeLa_A485_30min_R1 4 TAPTALGITLSSSPTSTPELR 21 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 TAPTALGITLSS(0.101)S(0.748)PT(0.072)S(0.072)T(0.007)PELR;TAPTALGITLSSS(0.996)PT(0.002)S(0.002)TPELR;TAPTALGITLSS(0.001)S(0.983)PT(0.008)S(0.008)TPELR;TAPTALGITLS(0.043)S(0.345)S(0.566)PT(0.02)S(0.02)T(0.006)PELR ;;; 290.18 7.49E-87 1749080000 1066050 1303310 1106320 1032330 1595040 1099870 1570940 1589740 1058740 1606250 TRUE FALSE FALSE 1303189.145 1455720.767 1515593.806 1088723.574 1436232.217 1157457.492 1235295.836 1199853.772 1271219.407 1205841.436 1.080730108 1.207224038 1.256876535 0.902874575 1.191062253 0.959875368 1.024426429 0.995034452 1.054217718 1 20.20160878 -5.250893223 24.99664256 1.023036285 1.184171608 0.460516567 0.080911949 625.8348659 1483359.724 0.02105059 0.035975866 5.61E-06 5.250893223 0.161135323 TAPTALGITLSSS(ph)PTSTPELR ddPTM_HeLa_A486_30min_R1 4 TAPTALGITLSSSPTSTPELR 21 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 TAPTALGIT(0.183)LS(0.041)S(0.258)S(0.509)PT(0.004)S(0.004)T(0.001)PELR;TAPTALGIT(0.013)LS(0.026)S(0.158)S(0.777)PT(0.021)S(0.004)T(0.001)PELR;TAPTALGITLS(0.003)S(0.031)S(0.963)PT(0.001)S(0.001)TPELR;TAPTALGITLS(0.002)S(0.024)S(0.966)PT(0.004)S(0.004)TPELR ;;; 282.2 7.30E-73 1599240000 1480340 1671770 1352670 689907 1878700 1628040 1825930 1896850 1380250 1768110 TRUE FALSE FALSE 1376575.81 1539292.857 1876460.05 1606138.362 1643055.928 1427188.977 1369063.001 1464978.663 1499891.181 1325363.748 1.038640006 1.16141162 1.415807587 1.211847212 1.239701879 1.076828139 1.032971517 1.105340829 1.131682668 1 20.33795693 -6.267048682 22.23361874 1.07367382 1.221738416 0.372578581 0.093118207 117.1875276 464492.8201 0.034003934 0.030916854 5.41E-07 6.267048682 0.148064595 TAPTLS(ph)PEHWK ddPTM_HeLa_A485_30min_R1 6 TAPTLSPEHWK 11 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 TAPT(0.001)LS(0.999)PEHWK;TAPTLS(1)PEHWK;TAPT(0.006)LS(0.994)PEHWK;TAPTLS(1)PEHWK;TAPT(0.021)LS(0.979)PEHWK;TAPT(0.036)LS(0.964)PEHWK ;;;;; 212.68 2.20E-15 2079750000 2140790 2137000 1697036 2772600 2833340 2187450 3305170 3201230 1938950 3579600 TRUE FALSE FALSE 2617001.35 2386903.561 2324840.236 2924060.117 2551242.721 2301981.5 2598993.429 2416123.323 2328079.48 2687271.598 0.973850709 0.88822565 0.865130357 1.088114845 0.949380302 0.856624057 0.967149517 0.899099044 0.866335759 1 21.35771071 -6.043740723 24.94936034 0.913326552 0.952301044 0.060127841 0.068300138 1393.434715 794800.7706 0.023002467 0.023004049 9.04E-07 6.043740723 0.038974492 TAPTLS(ph)PEHWK ddPTM_HeLa_A486_30min_R1 8 TAPTLSPEHWK 11 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 TAPT(0.001)LS(0.999)PEHWK;TAPTLS(1)PEHWK;TAPTLS(1)PEHWK;TAPT(0.007)LS(0.993)PEHWK;TAPTLS(1)PEHWK;TAPTLS(1)PEHWK;TAPT(0.003)LS(0.997)PEHWK;TAPTLS(1)PEHWK ;;;;;;; 252.08 1.90E-23 5222640000 3420650 3414660 1980655 1451326 3466680 3729200 4390480 4035990 2867776 4332650 TRUE FALSE FALSE 3180880.099 3144069.906 2747617.66 3378760.274 3031856.669 3269129.22 3291935.466 3117083.182 3116357.133 3247726.239 0.979417557 0.968083414 0.846012705 1.040346392 0.933532092 1.006590143 1.013612363 0.959773993 0.959550437 1 21.6309986 -5.289730458 24.99996688 0.98557186 0.934862368 0.253827683 0.044125179 1067.137212 942994.5149 0.01229265 0.018236278 5.13E-06 5.289730458 -0.050709492 TAQALSSGSGS(ph)QETK ddPTM_HeLa_A485_30min_R1 2 TAQALSSGSGSQETK 15 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALSSGSGS(1)QETK;TAQALSSGS(0.006)GS(0.994)QETK ; 338.42 3.04E-120 267230000 357280 261430 206974 601890 379480 310680 500650 352980 276390 831220 TRUE FALSE FALSE 436755.7034 292001.9644 283542.2955 634769.7266 341697.6388 326946.7244 393682.0376 266411.1015 331858.9378 624012.1515 0.699915382 0.467942753 0.454385856 1.017239368 0.547581706 0.523942881 0.630888416 0.426932554 0.531814865 1 19.2512146 -10.1506566 5.296204128 1.0000131 0.587377791 0.363927349 0.163011678 2.56E-05 4.11E-06 0.160269861 0.038869918 7.07E-11 10.1506566 -0.412635309 TAQALSSGSGS(ph)QETK ddPTM_HeLa_A486_30min_R1 3 TAQALSSGSGSQETK 15 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALSSGS(0.001)GS(0.999)QETK;TAQALSSGS(0.002)GS(0.998)QETK;TAQALSSGSGS(1)QETK ;; 324.91 7.49E-79 1079190000 990420 1001570 410681 466299 763310 1128330 1334850 1129510 909670 1608560 TRUE FALSE FALSE 920996.6725 922201.9455 569707.6816 1085567.637 667568.5422 989128.1166 1000856.411 872345.23 988520.928 1205766.106 0.763826971 0.764826562 0.472486064 0.900313611 0.553646797 0.820331664 0.830058505 0.723477983 0.819828094 1 20.20151865 -8.820983918 0.33808536 1.055233194 0.686737304 0.340316747 0.119313183 4.654391363 0.862383122 0.499688226 0.114884613 1.51E-09 8.820983918 -0.36849589 TAQALSSGSGS(ph)QETKIPISLVLR ddPTM_HeLa_A485_30min_R1 2 TAQALSSGSGSQETKIPISLVLR 23 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALSS(0.056)GS(0.239)GS(0.704)QETKIPISLVLR;TAQALSSGS(0.001)GS(0.999)QETKIPISLVLR ; 261.92 1.39E-61 1222330000 265109 325560 238940 291793 421340 369040 594990 632150 250547 488380 TRUE FALSE FALSE 324081.5824 363631.41 327333.8491 307732.9127 379389.9102 388362.3638 467865.5259 477114.2213 300829.4847 366635.854 0.883933142 0.991805373 0.892803706 0.839342114 1.034786713 1.059259097 1.276104126 1.30132996 0.820513001 1 18.48398835 -6.061672505 2.657311759 1.122938577 0.908826756 0.290918425 0.134154618 0.329256846 4.596718723 0.04760788 0.049875843 8.68E-07 6.061672505 -0.214111821 TAQALSSGSGS(ph)QETKIPISLVLR ddPTM_HeLa_A486_30min_R1 2 TAQALSSGSGSQETKIPISLVLR 23 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALSSGS(0.001)GS(0.999)QETKIPISLVLR;TAQALSS(0.003)GS(0.002)GS(0.995)QETKIPISLVLR ; 248.82 1.44E-49 900090000 347470 279400 195372 140388 351590 318970 449700 427110 235300 476000 TRUE FALSE FALSE 323114.1473 257259.3264 271025.2706 326830.3588 307490.3038 279618.7244 337180.3036 329866.3767 255695.9935 356806.5018 0.905572476 0.721005153 0.759586132 0.915987677 0.861784475 0.783670485 0.944994841 0.924496541 0.716623694 1 18.44478238 -14 0.174821926 1.610328327 0.804705249 0.228813371 0.084022677 199.169747 1.89743971 42.58581959 0.285599867 1.00E-14 14 -0.805623078 TAQEKDSLIT(ph)PHVS(ph)R ddPTM_HeLa_A485_30min_R1 2 TAQEKDSLITPHVSR 15 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 TAQEKDSLIT(1)PHVS(1)R;TAQEKDSLIT(1)PHVS(1)R ; 143.93 7.71E-08 1449300000 1396090 1582870 1258070 1663580 2503900 1977370 3303300 3943600 1380400 2349200 TRUE FALSE FALSE 1706645.404 1767972.877 1723482.446 1754457.163 2254602.924 2080902.036 2597522.97 2976425.917 1657433.618 1763587.674 0.967712255 1.002486524 0.977259294 0.994822763 1.278418395 1.179925482 1.472862965 1.687710773 0.939807894 1 20.75008187 -5.776154435 4.175503022 1.304607841 0.982618578 0.288277457 0.204283609 0.238543541 9.463152569 0.063571515 0.077076269 1.67E-06 5.776154435 -0.321989264 TAQEKDSLIT(ph)PHVS(ph)R ddPTM_HeLa_A486_30min_R1 2 TAQEKDSLITPHVSR 15 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 2 0 TAQEKDS(0.002)LIT(0.998)PHVS(1)R;TAQEKDSLIT(1)PHVS(1)R ; 128.01 1.96E-05 1750050000 1607110 1467490 967590 756310 1997890 1731500 2517600 2554300 1186050 2057430 TRUE FALSE FALSE 1494459.888 1351200.748 1342266.761 1760727.902 1747296.007 1517885.135 1887669.852 1972741.65 1288857.769 1542236.136 0.969021444 0.876130909 0.87033803 1.141672057 1.132962693 0.984210588 1.223982377 1.279143708 0.835707152 1 20.55659225 -5.259826189 24.98253568 1.100555631 0.902260197 0.307636009 0.122400898 158.5309916 2455057.362 0.033279984 0.053952886 5.50E-06 5.259826189 -0.198295434 TAQEKDSLITPHVS(ph)R ddPTM_HeLa_A485_30min_R1 3 TAQEKDSLITPHVSR 15 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 TAQEKDSLITPHVS(1)R;TAQEKDSLIT(0.002)PHVS(0.998)R;TAQEKDSLITPHVS(1)R ;; 141.78 4.89E-08 629140000 397530 552230 446910 403460 798090 692870 977020 1293300 505830 655830 TRUE FALSE FALSE 485959.177 616808.4947 612240.6065 425499.9982 718629.3573 729147.6018 768271.6955 976116.1472 607345.4413 492343.6507 0.987032485 1.25280075 1.243522905 0.864233747 1.459609272 1.480972895 1.560437906 1.982591115 1.233580326 1 18.90930613 -5.887970976 7.440274404 1.514097816 1.111044223 0.305532198 0.260777152 0.253599028 15.64322951 0.078885402 0.08965941 1.29E-06 5.887970976 -0.403053593 TAQEKDSLITPHVS(ph)R ddPTM_HeLa_A486_30min_R1 1 TAQEKDSLITPHVSR 15 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;H7BZ48;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD6;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 TAQEKDS(0.001)LIT(0.049)PHVS(0.949)R 43.164 0.035501 135580000 83379 70348 57031 36895 95883 79016 98683 109200 62680 104950 TRUE FALSE FALSE 77534.56267 64773.36828 79114.93054 85893.42457 83856.46007 69267.8093 73991.46964 84337.54382 68113.15287 78669.83689 0.98556913 0.823357094 1.005657742 1.091821567 1.065928994 0.880487516 0.940531626 1.072044219 0.865810272 1 16.26352297 -4.797262156 24.99925691 0.993487886 0.904462869 0.150008888 0.081431107 276.714455 193107.0354 0.021574891 0.044914145 1.59E-05 4.797262156 -0.089025017 TAQNFLSIFLK ddPTM_HeLa_A485_30min_R1 1 TAQNFLSIFLK 11 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 0 108.56 0.0076355 946210 1343.8 1547.3 1291.6 1120.9 1382.7 1288 1506.9 1900.9 1716.1 2507.7 FALSE FALSE TRUE 1642.723674 1728.243275 1769.416588 1182.131929 1245.033533 1355.437688 1184.938505 1434.701295 2060.505529 1882.576541 0.872593299 0.918020191 0.939890915 0.627932997 0.661345505 0.719990746 0.629423813 0.762094536 1.094513548 1 10.87849281 -9.847666064 7.091866735 1.000000001 0.792238687 0.137944949 0.145676225 3.52E-09 4.73E-10 0.150080305 0.03639982 1.42E-10 9.847666064 -0.207761315 TAQSPAMVGS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 TAQSPAMVGSPIR 13 0 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 TAQSPAMVGS(1)PIR 113.01 0.00025671 195120000 96338 87569 93140 127010 142280 91895 132560 130340 99456 184090 TRUE FALSE FALSE 117768.0557 97809.4328 127596.3619 133948.2347 128114.1036 96706.4801 104237.4731 98373.91063 119415.9069 138199.7509 0.852158234 0.707739574 0.923274905 0.969236441 0.927021234 0.699758715 0.75425225 0.711824081 0.864081926 1 17.07639549 -6.248303521 24.97000922 0.784739199 0.874363447 0.083968324 0.104174318 1576.871689 2997483.869 0.035159668 0.034949733 5.65E-07 6.248303521 0.089624248 TAQSPAMVGS(ph)PIR ddPTM_HeLa_A486_30min_R1 1 TAQSPAMVGSPIR 13 0 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 TAQSPAMVGS(1)PIR 159.14 5.93E-07 0 149810 164170 115180 44253 165450 152890 174710 178640 139760 148030 TRUE FALSE FALSE 139309.0926 151160.5713 159780.7806 103023.2204 144697.7182 134027.9863 130995.7101 137967.5717 151874.5093 110962.3245 1.255462998 1.362269329 1.43995524 0.928452255 1.304025658 1.20786931 1.180542231 1.243373121 1.368703387 1 16.75971039 -10.9722081 2.795687708 0.79008525 1.251130816 0.248836151 0.132545207 46266182.75 55325991.7 63258885.53 0.033028785 1.07E-11 10.9722081 0.461045565 TAQVPS(ph)PPR ddPTM_HeLa_A485_30min_R1 9 TAQVPSPPR 9 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR ;;;;;;;; 130.56 0.00024011 29624670000 3499550 3785350 3594180 4379520 4760840 3488830 4841240 4076520 3593340 5937020 TRUE FALSE FALSE 4278012.824 4228013.754 4923816.748 4618762.088 4286834.053 3671499.744 3806869.525 3076747.078 4314490.378 4457030.177 0.959834835 0.948616811 1.104730404 1.036286923 0.961814007 0.823754742 0.854126935 0.690313271 0.968019108 1 22.0876513 -6.107044565 3.732963659 0.847394186 1.013458777 0.363587683 0.089081296 0.232117925 5.835479411 0.029861954 0.030318211 7.82E-07 6.107044565 0.166064591 TAQVPS(ph)PPR ddPTM_HeLa_A486_30min_R1 8 TAQVPSPPR 9 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR ;;;;;;; 156.01 3.72E-05 33637000000 5445800 5517530 3748040 1904479 5423580 5653560 6156950 6061920 4735860 6728820 TRUE FALSE FALSE 5064077.542 5080300.828 5199381.464 4433723.359 4743304.024 4956081.248 4616415.988 4681753.147 5146368.158 5043879.675 1.004004431 1.007220861 1.030829798 0.879030359 0.940407847 0.982593077 0.915251014 0.928204765 1.020319375 1 22.26610243 -5.22311712 24.99518339 0.9484948 1.013338628 0.333429721 0.039764672 610.0282979 397882.0348 0.010622848 0.018398821 5.98E-06 5.22311712 0.064843827 TAQVPS(ph)PPRGK ddPTM_HeLa_A485_30min_R1 4 TAQVPSPPRGK 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TAQVPS(1)PPRGK;TAQVPS(1)PPRGK;TAQVPS(1)PPRGK;TAQVPS(1)PPRGK ;;; 118.52 0.00011577 15187800000 1800780 2836890 1859850 1952730 3859010 3332120 5039530 7068220 2092300 2910900 TRUE FALSE FALSE 2201357.298 3168639.608 2547885.91 2059402.695 3474793.415 3506584.651 3962793.246 5334727.962 2512205.418 2185266.201 1.007363449 1.450001655 1.16593846 0.942403582 1.590100745 1.604648737 1.813414423 2.441225678 1.149610705 1 21.0593776 -5.892719185 5.763873818 1.693668988 1.167251483 0.231938827 0.389368856 0.270923322 12.83974682 0.119315872 0.13600661 1.28E-06 5.892719185 -0.526417504 TAQVPS(ph)PPRGK ddPTM_HeLa_A486_30min_R1 4 TAQVPSPPRGK 11 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TAQVPS(1)PPRGK;TAQVPS(1)PPRGK;TAQVPS(1)PPRGK;TAQVPS(1)PPRGK ;;; 127.36 2.63E-05 11420400000 3887460 2696840 2003640 1937840 4892680 3175300 5142390 5421370 2221790 5217770 TRUE FALSE FALSE 3614969.129 2483132.577 2779503.067 4511389.453 4278994.452 2783563.77 3855709.631 4187042.399 2414376.546 3911206.43 0.924259354 0.634876379 0.710651078 1.153452147 1.094034418 0.711689301 0.985810823 1.070524523 0.617297141 1 21.89918225 -5.218857114 24.91649216 0.948353619 0.74442359 0.20601016 0.171281914 708.6065036 414631.4514 0.046276703 0.08015293 6.04E-06 5.218857114 -0.203930029 TARPFGIQAPGGTSQMERS(ph)PMLER ddPTM_HeLa_A485_30min_R1 4 TARPFGIQAPGGTSQMERSPMLER 24 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 TARPFGIQAPGGT(0.015)S(0.07)QMERS(0.915)PMLER;T(0.003)ARPFGIQAPGGT(0.186)S(0.186)QMERS(0.624)PMLER;TARPFGIQAPGGTSQMERS(1)PMLER;TARPFGIQAPGGT(0.016)S(0.064)QMERS(0.92)PMLER ;;; 162.32 2.82E-14 3011460000 279556 427100 416560 354525 748147 540649 705497 884050 424821 569443 TRUE FALSE FALSE 341742.2677 477045.6297 570662.8785 373891.803 673658.8578 568956.5456 554761.8026 667235.3514 510078.678 427491.3399 0.799413312 1.115918816 1.334910968 0.874618426 1.575842116 1.330919466 1.297714716 1.560816066 1.193190669 1 18.70553567 -3.708318613 0.786747627 1.319813046 3.95E-13 0.313213726 0.207859672 6.281410103 1.621026946 0.074812421 8.878383528 0.000195741 3.708318613 -1.319813046 TARPFGIQAPGGTSQMERS(ph)PMLER ddPTM_HeLa_A486_30min_R1 3 TARPFGIQAPGGTSQMERSPMLER 24 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 TARPFGIQAPGGTS(0.002)QMERS(0.998)PMLER;TARPFGIQAPGGTSQMERS(1)PMLER;TARPFGIQAPGGTSQMERS(1)PMLER ;; 226.28 1.24E-38 2349670000 463196 439731 517578 312303 909461 559128 869950 839470 439670 616210 TRUE FALSE FALSE 430728.3523 404885.1141 717998.0628 727057.1669 795387.921 490148.4722 652279.3086 648341.0065 477780.9496 461907.0051 0.932500152 0.876551145 1.554421247 1.574033645 1.721965487 1.061141023 1.412144222 1.403618043 1.034366105 1 18.8172429 -7.773566479 22.37826276 1.017181485 1.326979343 0.167394757 0.266770725 136.0082511 250946.8654 0.26843625 0.072080097 1.68E-08 7.773566479 0.309797858 TAS(ph)EGDGGAAAGAAAAGAR ddPTM_HeLa_A485_30min_R1 2 TASEGDGGAAAGAAAAGAR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TAS(1)EGDGGAAAGAAAAGAR;TAS(1)EGDGGAAAGAAAAGAR ; 465.55 1.50E-226 1640340000 676300 449240 463370 893430 750150 465220 595180 414670 501690 1181480 TRUE FALSE FALSE 826740.6018 501774.7101 634789.8454 942235.8186 675462.4321 489578.1998 468014.9308 312971.5323 602374.5812 886958.7795 0.932107129 0.565724949 0.715692612 1.062321993 0.761548843 0.551974016 0.527662549 0.352859163 0.679146083 1 19.75850753 -6.196402253 5.229423167 0.576013132 0.805842068 0.162663858 0.197862195 0.330146241 18.01727131 0.065713306 0.065237777 6.36E-07 6.196402253 0.229828936 TAS(ph)EGDGGAAAGAAAAGAR ddPTM_HeLa_A486_30min_R1 2 TASEGDGGAAAGAAAAGAR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TAS(1)EGDGGAAAGAAAAGAR;TAS(1)EGDGGAAAGAAAAGAR ; 468.22 1.05E-226 2298100000 1101950 1196580 808120 504590 1155250 1189450 1427560 1307040 1119740 1376320 TRUE FALSE FALSE 1024708.995 1101758.643 1121045.706 1174711.021 1010347.773 1042707.752 1070369.389 1009455.524 1216799.965 1031680.514 0.993242561 1.067926193 1.086620995 1.138638372 0.979322338 1.010688618 1.03750083 0.978457489 1.179434862 1 19.97656484 -5.775298937 24.99809892 1.029142986 1.072416561 0.090456191 0.06306686 578.3316587 1043118.837 0.019334348 0.022036427 1.68E-06 5.775298937 0.043273576 TAS(ph)EGDGGAAAGAAAAGARPVSVAGSPLS(ph)PGPVR ddPTM_HeLa_A485_30min_R1 1 TASEGDGGAAAGAAAAGARPVSVAGSPLSPGPVR 34 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 T(0.471)AS(0.527)EGDGGAAAGAAAAGARPVS(0.011)VAGS(0.034)PLS(0.956)PGPVR 50.13 0.027663 173820000 91212 82028 69599 98083 124170 105760 128290 109780 85331 143400 TRUE FALSE FALSE 111501.7947 91620.46105 95346.56636 103441.0259 111807.1988 111297.4301 100879.7935 82856.28287 102456.149 107653.0191 1.035751674 0.851071914 0.885684091 0.960874361 1.038588604 1.03385331 0.937082809 0.769660559 0.951725738 1 16.71602925 -9.188640934 0.002635852 0.818190567 1.061309577 0 0.084683721 5382993.795 3859.251824 179888.6241 176072.1951 6.48E-10 9.188640934 0.243119011 TAS(ph)EGDGGAAAGAAAAGARPVSVAGSPLS(ph)PGPVR ddPTM_HeLa_A486_30min_R1 1 TASEGDGGAAAGAAAAGARPVSVAGSPLSPGPVR 34 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 T(0.148)AS(0.852)EGDGGAAAGAAAAGARPVS(0.001)VAGS(0.007)PLS(0.993)PGPVR 118.84 3.21E-05 216040000 157110 164040 123360 92198 207430 187580 218300 212260 147400 265000 TRUE FALSE FALSE 146097.4003 151040.873 171128.2957 214641.6034 181412.1952 164438.2868 163679.0311 163933.0316 160176.7507 198642.2751 0.735479898 0.760366205 0.861489809 1.08054342 0.91326076 0.827811133 0.823988906 0.82526759 0.806357814 1 17.59981316 -4.778975701 4.370164216 0.890019258 0.743905774 0.331745322 0.082886523 0.242460243 10.782325 0.023736421 0.058763251 1.66E-05 4.778975701 -0.146113484 TAS(ph)EINFDK ddPTM_HeLa_A485_30min_R1 1 TASEINFDK 9 0 Q9Y4K4 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 1 0 T(0.001)AS(0.999)EINFDK 92.295 0.0031912 80740000 88682 85673 37077 127560 105150 68620 93561 84931 57505 137310 TRUE FALSE FALSE 108409.005 95691.71209 50793.3252 134528.2798 94680.8968 72212.83709 73570.92803 64101.53908 69045.72603 103081.144 1.051686087 0.928314417 0.492750888 1.305071661 0.918508401 0.700543613 0.713718583 0.621855139 0.669819167 1 16.65342093 -6.244981977 8.016324048 0.715735388 0.934483846 0.177728917 0.209386587 0.332406155 129.6805076 0.070262887 0.068236297 5.69E-07 6.244981977 0.218748459 TAS(ph)EINFDK ddPTM_HeLa_A486_30min_R1 1 TASEINFDK 9 0 Q9Y4K4 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 1 0 T(0.002)AS(0.998)EINFDK 103.88 0.0016692 0 49313 58687 35837 28212 48596 68042 79343 69561 43979 64546 TRUE FALSE FALSE 45856.41335 54036.42839 49714.04615 65678.96176 42500.63654 59647.66984 59490.5422 53723.47881 47791.13513 48383.26148 0.947774333 1.116841377 1.027505063 1.357472807 0.878416114 1.232816227 1.229568664 1.11037324 0.987761752 1 15.5622204 -4.260855085 22.39615205 1.114325565 0.947774182 0.106256998 0.13369493 24.46065474 936467.4267 0.031705674 0.182640008 5.48E-05 4.260855085 -0.166551383 TAS(ph)EINFDKLQFEPPLRK ddPTM_HeLa_A485_30min_R1 2 TASEINFDKLQFEPPLRK 18 2 Q9Y4K4 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 1 0 TAS(1)EINFDKLQFEPPLRK;T(0.446)AS(0.554)EINFDKLQFEPPLRK ; 191.4 1.57E-18 710260000 760170 562920 357090 782250 892520 733550 1289550 1439700 509320 1061560 TRUE FALSE FALSE 929267.1939 628748.5972 489192.4508 824982.3367 803657.575 771957.5437 1014027.108 1086611.318 611535.8522 796932.6286 1.166054897 0.788960791 0.613844174 1.035197088 1.008438538 0.968660983 1.272412587 1.363492068 0.767362046 1 19.60409824 -5.850799361 1.633001636 1.109462184 0.859033245 0.142423535 0.203721733 0.601630447 3.317319962 0.077406904 0.096692033 1.41E-06 5.850799361 -0.250428939 TAS(ph)EINFDKLQFEPPLRK ddPTM_HeLa_A486_30min_R1 2 TASEINFDKLQFEPPLRK 18 2 Q9Y4K4 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 1 0 T(0.088)AS(0.912)EINFDKLQFEPPLRK;T(0.022)AS(0.978)EINFDKLQFEPPLRK ; 150.83 1.37E-08 722680000 751470 677330 357690 448280 712010 793880 1232880 1126900 482870 920210 TRUE FALSE FALSE 698795.8336 623655.904 496197.1473 1043618.495 622703.0666 695939.1572 924400.3839 870329.4701 524725.5604 689783.4264 1.013065561 0.904132921 0.719352087 1.512965454 0.902751563 1.00892415 1.340131335 1.261743087 0.760710594 1 19.39578394 -5.189995486 25 1.119815875 0.881378777 0.195459815 0.216815209 251.0126051 87834.36553 0.057896196 0.100279144 6.46E-06 5.189995486 -0.238437098 TAS(ph)ELLLDR ddPTM_HeLa_A485_30min_R1 4 TASELLLDR 9 0 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 0 T(0.02)AS(0.98)ELLLDR;TAS(1)ELLLDR;TAS(1)ELLLDR;T(0.003)AS(0.997)ELLLDR ;;; 199.03 9.90E-10 576214000 583188 541324 323574 656022 365656 541940 665594 616446 424304 1277520 TRUE FALSE FALSE 712916.1586 604627.1329 443277.4876 691858.8207 329250.0047 570315.1404 523384.4045 465261.652 509457.9209 959057.775 0.743350586 0.630438696 0.462201026 0.721394309 0.343305704 0.594661923 0.545727711 0.485123695 0.531206705 1 19.8712582 -10.38574456 6.031460476 1.000087308 0.557502474 0.571937858 0.113636259 0.000129654 1.32E-05 0.106928591 0.025928915 4.11E-11 10.38574456 -0.442584834 TAS(ph)ELLLDR ddPTM_HeLa_A486_30min_R1 4 TASELLLDR 9 0 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 0 T(0.001)AS(0.999)ELLLDR;TAS(1)ELLLDR;TAS(1)ELLLDR;TAS(1)ELLLDR ;;; 218.43 5.57E-12 445043000 541410 548162 450784 169565 692930 608375 564750 501773 667840 835920 TRUE FALSE FALSE 503459.9548 504723.6467 625339.6372 394755.8893 606016.2581 533319.878 423443.5767 387530.2415 725728.9089 626600.1911 0.803478776 0.80549552 0.997988264 0.629996439 0.967149814 0.851132645 0.675779521 0.618464927 1.158200906 1 19.25718568 -7.774657987 24.99985636 1.079100572 0.799199987 0.449199344 0.126301385 243.3850313 460290.9268 0.119015002 0.031470693 1.68E-08 7.774657987 -0.279900585 TAS(ph)EPNLK ddPTM_HeLa_A485_30min_R1 2 TASEPNLK 8 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 T(0.004)AS(0.996)EPNLK;T(0.004)AS(0.996)EPNLK ; 85.958 0.0046553 387490000 529960 619060 573550 757070 789560 626560 966880 963980 615490 1000860 TRUE FALSE FALSE 647847.7737 691453.6819 785730.0124 798426.8171 710948.6341 659365.7128 760298.1893 727562.3935 739013.1974 751364.0215 0.8622289 0.920264562 1.045738138 1.062636478 0.946210643 0.877558273 1.011890598 0.968322109 0.98356213 1 19.51915251 -4.543111884 6.675048232 0.984229792 0.875625529 0.399286041 0.049209966 0.146926236 26.33889671 0.013685768 0.039089905 2.86E-05 4.543111884 -0.108604263 TAS(ph)EPNLK ddPTM_HeLa_A486_30min_R1 3 TASEPNLK 8 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 TAS(1)EPNLK;TAS(1)EPNLK;T(0.002)AS(0.998)EPNLK ;; 127.37 0.00058685 1658550000 1976080 1964490 850990 895230 1680200 2142550 2760960 2486630 1515430 3579000 TRUE FALSE FALSE 1837566.996 1808816.658 1180516.118 2084140.682 1469453.649 1878223.965 2070138.606 1920478.632 1646788.693 2682795.105 0.684944964 0.674228403 0.440032158 0.776854214 0.547732343 0.700099669 0.771635002 0.715849909 0.613833196 1 21.35530544 -14 0.216244282 2.698043315 0.613792862 0.53234087 0.09666694 115.9574466 1.159257575 85.54647753 0.190214467 1.00E-14 14 -2.084250453 TAS(ph)FSESR ddPTM_HeLa_A485_30min_R1 10 TASFSESR 8 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 TAS(0.999)FS(0.001)ESR;T(0.001)AS(0.981)FS(0.019)ESR;TAS(0.973)FS(0.027)ESR;TAS(1)FSESR;TAS(0.998)FS(0.002)ESR;T(0.001)AS(0.996)FS(0.002)ESR;TAS(0.991)FS(0.009)ESR;T(0.001)AS(0.864)FS(0.135)ESR;T(0.005)AS(0.86)FS(0.135)ESR;TAS(0.969)FS(0.031)ESR ;;;;;;;;; 204.34 9.48E-15 75151600000 14581340 15710920 14845170 17289140 18116180 14978310 21053120 17487310 15985050 24114280 TRUE FALSE FALSE 17824908.78 17548175.43 20337016.14 18233601.94 16312469.51 15762551.15 16554948.92 13198519.8 19193102.91 18103033.79 0.984636553 0.969349979 1.123403756 1.007212501 0.901090375 0.870713237 0.914484783 0.729077787 1.060214721 1 24.10972815 -5.734844388 4.860371671 0.896466919 1.026626354 0.249370165 0.090016028 0.230279884 13.37073509 0.026469989 0.033186897 1.84E-06 5.734844388 0.130159435 TAS(ph)FSESR ddPTM_HeLa_A486_30min_R1 8 TASFSESR 8 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 TAS(1)FSESR;TAS(0.999)FS(0.001)ESR;TAS(0.979)FS(0.021)ESR;TAS(1)FSESR;T(0.001)AS(0.993)FS(0.006)ESR;T(0.004)AS(0.993)FS(0.003)ESR;TAS(0.945)FS(0.055)ESR;TAS(0.999)FS(0.001)ESR ;;;;;;; 205.59 1.25E-06 95174000000 20820310 22338240 15690400 7300220 20345400 20891410 23847050 22467710 18699520 24323120 TRUE FALSE FALSE 19360913.79 20568076.51 21766143.08 16995281.09 17793490.22 18314040.24 17880265.86 17352302.9 20320409.45 18232452.44 1.061893009 1.128102573 1.193813238 0.932144546 0.975924127 1.004474867 0.980683533 0.951726212 1.114518714 1 24.12000529 -5.263145291 24.99838767 0.99130103 1.127952904 0.559261726 0.054358239 107.425641 1574221.084 0.01494218 0.023551183 5.46E-06 5.263145291 0.136651874 TAS(ph)FSESRADEVAPAK ddPTM_HeLa_A485_30min_R1 4 TASFSESRADEVAPAK 16 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 TAS(0.966)FS(0.034)ESRADEVAPAK;T(0.008)AS(0.99)FS(0.002)ESRADEVAPAK;T(0.027)AS(0.965)FS(0.008)ESRADEVAPAK;TAS(0.995)FS(0.005)ESRADEVAPAK ;;; 253.31 8.97E-51 8112770000 2400181 2635667 2206022 3054935 4410210 3610676 6050810 7120720 3007424 4855450 TRUE FALSE FALSE 2934092.983 2943885.328 3022121.338 3221818.364 3971114.007 3799725.412 4758005.013 5374352.255 3610986.411 3645075.673 0.80494707 0.807633529 0.829097009 0.883882436 1.089446246 1.042427031 1.30532407 1.474414453 0.990647859 1 21.79751733 -5.912432615 1.30372045 1.216715452 0.804301341 0.56115909 0.13907228 0.294834617 1.048073453 0.057949154 0.071187548 1.22E-06 5.912432615 -0.412414111 TAS(ph)FSESRADEVAPAK ddPTM_HeLa_A486_30min_R1 4 TASFSESRADEVAPAK 16 1 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 T(0.137)AS(0.719)FS(0.137)ES(0.008)RADEVAPAK;T(0.05)AS(0.88)FS(0.066)ES(0.003)RADEVAPAK;T(0.147)AS(0.806)FS(0.046)ES(0.001)RADEVAPAK;T(0.005)AS(0.995)FS(0.001)ESRADEVAPAK ;;; 186.11 4.02E-18 7916510000 3006300 2577050 1842950 1487072 3796080 3046890 4599820 4845740 2213500 4349670 TRUE FALSE FALSE 2795573.895 2372835.173 2556589.596 3461978.768 3319940.249 2670995.69 3448896.384 3742470.784 2405367.962 3260484.32 0.857410624 0.727755431 0.784113446 1.061798932 1.018235306 0.819202127 1.057786527 1.147826647 0.737733332 1 21.63665485 -5.245746151 23.71790931 0.98211663 0.783559332 0.351662256 0.11661566 440.7681001 666150.3796 0.03112426 0.053632458 5.68E-06 5.245746151 -0.198557298 TAS(ph)FSESRADEVAPAKK ddPTM_HeLa_A485_30min_R1 4 TASFSESRADEVAPAKK 17 2 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 T(0.001)AS(0.787)FS(0.201)ES(0.011)RADEVAPAKK;TAS(0.961)FS(0.039)ESRADEVAPAKK;T(0.177)AS(0.685)FS(0.139)ESRADEVAPAKK;TAS(0.96)FS(0.039)ES(0.001)RADEVAPAKK ;;; 204.5 2.57E-25 6101850000 952170 1197300 699028 1006640 1772340 1764910 2955260 4168370 1139710 1765750 TRUE FALSE FALSE 1163976.932 1337313.82 957627.5462 1061630.194 1595879.607 1857317.959 2323844.559 3146070.722 1368439.343 1325581.021 0.878088108 1.008851061 0.722420984 0.800879145 1.203909517 1.401134996 1.753076215 2.373352267 1.032331726 1 20.33819342 -6.159614109 1.995030408 1.63942615 0.857001472 0.391846301 0.375277268 0.298059025 2.337953171 0.14298253 0.140720884 6.92E-07 6.159614109 -0.782424678 TAS(ph)FSESRADEVAPAKK ddPTM_HeLa_A486_30min_R1 2 TASFSESRADEVAPAKK 17 2 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 1 0 T(0.027)AS(0.84)FS(0.133)ESRADEVAPAKK;T(0.001)AS(0.452)FS(0.452)ES(0.096)RADEVAPAKK ; 217.17 3.50E-34 1934860000 1110700 766990 451690 541000 1103080 885770 1428600 1469050 567380 1486220 TRUE FALSE FALSE 1032845.666 706210.9191 626596.4647 1259475.341 964721.4206 776492.7032 1071149.17 1134579.384 616560.9552 1114060.838 0.927099877 0.63390696 0.562443668 1.130526536 0.865950393 0.696993087 0.961481755 1.018417796 0.553435624 1 20.08739659 -5.237964118 24.99761569 0.884302484 0.700425875 0.178425448 0.178240082 1389.891006 1480022.428 0.047695337 0.082547006 5.78E-06 5.237964118 -0.183876609 TAS(ph)GSS(ph)VTS(ph)LDGTR ddPTM_HeLa_A486_30min_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 3 0 TAS(1)GS(0.021)S(0.974)VT(0.018)S(0.987)LDGTR 160.99 6.70E-12 803640000 679000 883280 541560 388630 894150 902980 955930 986630 707850 884790 TRUE FALSE FALSE 631405.6064 813285.6759 751266.5355 904750.2803 781997.3694 791579.5084 716746.2032 761995.887 769207.0079 663232.825 0.952011997 1.226244609 1.132734248 1.364151843 1.179069159 1.193516784 1.08068566 1.148911601 1.159784285 1 19.33915589 -6.752091182 24.9414461 1.109754685 1.183881181 0.10917797 0.103785755 460.1744901 1227769.174 0.039816148 0.030405393 1.77E-07 6.752091182 0.074126496 TAS(ph)GSS(ph)VTSLDGTR ddPTM_HeLa_A486_30min_R1 1 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 2 0 T(0.003)AS(0.997)GS(0.143)S(0.694)VT(0.129)S(0.035)LDGTR 99.909 0.0014675 569170000 451960 455400 284290 208260 479700 488800 554250 544910 346990 520130 TRUE FALSE FALSE 420279.9379 419312.4455 394374.7016 484839.8049 419531.553 428496.8258 415570.7877 420845.8883 377067.3726 389886.0625 1.077955788 1.075474314 1.011512694 1.243542284 1.076036292 1.099030889 1.065877516 1.079407367 0.967121959 1 18.57269306 -7.705722779 5.475422362 0.98349406 1.092695628 0.370443596 0.056160017 0.194124112 11.80445966 0.041755603 0.014443723 1.97E-08 7.705722779 0.109201569 TAS(ph)GSSVTSLDGTR ddPTM_HeLa_A485_30min_R1 2 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 TAS(0.989)GS(0.01)SVTSLDGTR;TAS(1)GSSVTSLDGTR ; 225.33 6.78E-28 8594500000 3101400 3073200 2841600 3181100 4491800 2598000 3797800 3186200 2197400 3495300 TRUE FALSE FALSE 3791295.73 3432584.007 3892826.089 3354875.438 4044580.62 2734027.263 2986369.005 2404779.454 2638398.024 2623986.036 1.444861245 1.308156354 1.483554423 1.278541651 1.541388012 1.041936666 1.138104 0.916460462 1.005492403 1 21.32332861 -6.278156419 23.11445286 1.022533945 1.402208724 0.830766965 0.08816423 119.3838167 165069.7246 0.029794331 0.026369476 5.27E-07 6.278156419 0.37967478 TAS(ph)GSSVTSLDGTR ddPTM_HeLa_A486_30min_R1 3 TASGSSVTSLDGTR 14 0 Q92597;Q92597-3;Q92597-2;E5RJY1;E7ESM1 Q92597 NDRG1 Protein NDRG1 1 0 TAS(1)GSSVTSLDGTR;TAS(0.99)GS(0.01)SVTSLDGTR;TAS(1)GSSVTSLDGTR ;; 304.08 1.78E-58 6556600000 2975280 3078890 2085200 1131360 3423960 3165450 3728390 3846740 2351360 2941280 TRUE FALSE FALSE 2766728.236 2834907.543 2892645.284 2633863.256 2994495.01 2774928.963 2795507.387 2970921.276 2555177.778 2204764.343 1.254886149 1.285809774 1.31199749 1.194623481 1.358192779 1.258605697 1.267939313 1.3475006 1.158934643 1 21.07219303 -8.021284266 4.551681891 1.000248146 1.283214374 0.797695563 0.045031967 0.069246588 4.746620167 0.04090572 0.010694574 9.52E-09 8.021284266 0.282966228 TAS(ph)LNQRPR ddPTM_HeLa_A485_30min_R1 1 TASLNQRPR 9 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 T(0.017)AS(0.983)LNQRPR 88.187 0.0018742 222880000 96693 79190 72420 106440 124130 77277 154170 154310 117450 154300 TRUE FALSE FALSE 118202.0243 88450.58164 99211.17165 112254.5477 111771.1814 81323.10423 121230.32 116465.2306 141021.1377 115835.8497 1.020426963 0.763585556 0.856480718 0.969082957 0.9649101 0.702054713 1.046569956 1.005433386 1.217422224 1 16.82172229 -6.967372249 24.94571563 1.072057084 0.880512685 0.433705296 0.105547299 172.1630038 131627.8042 0.043250997 0.029159614 1.08E-07 6.967372249 -0.191544399 TAS(ph)LNQRPR ddPTM_HeLa_A486_30min_R1 1 TASLNQRPR 9 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 T(0.041)AS(0.959)LNQRPR 93.345 0.0014649 261500000 161130 154930 102390 73526 158900 196580 208490 252310 137910 186920 TRUE FALSE FALSE 149835.6191 142652.7826 142038.1501 171172.2438 138969.2803 172327.9583 156323.5968 194864.5209 149864.1498 140114.0154 1.069383521 1.018119295 1.013732636 1.221663967 0.991829975 1.229912353 1.115688509 1.390756809 1.069587146 1 17.09624175 -6.269859943 24.93664312 1.182767485 1.066539115 0.14233085 0.114447283 992.7213015 2939833.925 0.038228728 0.034271753 5.37E-07 6.269859943 -0.116228371 TAS(ph)LPGYGR ddPTM_HeLa_A485_30min_R1 7 TASLPGYGR 9 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 T(0.001)AS(0.999)LPGYGR;TAS(1)LPGYGR;TAS(1)LPGYGR;TAS(1)LPGYGR;TAS(1)LPGYGR;T(0.005)AS(0.995)LPGYGR;T(0.025)AS(0.975)LPGYGR ;;;;;; 210.64 2.94E-10 6289047000 2531420 2790160 2598836 3016716 3532500 2812865 3873010 3817350 2518863 3990100 TRUE FALSE FALSE 3094525.646 3116444.941 3560253.583 3181511.556 3180791.897 2960142.262 3045509.774 2881138.927 3024375.7 2995441.502 1.03307831 1.040395861 1.188557206 1.062117739 1.061877488 0.98821568 1.016714822 0.961841159 1.00965941 1 21.51433723 -6.120322221 2.420992371 0.993198491 1.08556079 0.484980424 0.04233358 0.264754239 3.041768889 0.01604092 0.016231282 7.58E-07 6.120322221 0.0923623 TAS(ph)LPGYGR ddPTM_HeLa_A486_30min_R1 5 TASLPGYGR 9 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 T(0.037)AS(0.963)LPGYGR;TAS(1)LPGYGR;T(0.001)AS(0.999)LPGYGR;T(0.001)AS(0.999)LPGYGR;TAS(1)LPGYGR ;;;; 171.34 5.46E-06 5188990000 2348150 2330790 1776900 1025399 2671550 2412080 3010810 2837550 2145230 3112440 TRUE FALSE FALSE 2183556.811 2146089.712 2464963.267 2387180.693 2336459.288 2114502.094 2257473.493 2191501.808 2331180.264 2333064.765 0.935917786 0.91985861 1.056534436 1.02319521 1.001454963 0.906319501 0.967600011 0.939323177 0.999192263 1 21.15379493 TAS(ph)NPKVENEDEPVR ddPTM_HeLa_A485_30min_R1 6 TASNPKVENEDEPVR 15 1 Q9UBF8-2 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 T(0.007)AS(0.993)NPKVENEDEPVR;T(0.25)AS(0.75)NPKVENEDEPVR;T(0.003)AS(0.997)NPKVENEDEPVR;T(0.011)AS(0.989)NPKVENEDEPVR;T(0.016)AS(0.984)NPKVENEDEPVR;T(0.012)AS(0.988)NPKVENEDEPVR ;;;;; 202.16 1.18E-25 4028000000 3024570 2344600 1861660 6125800 4866870 3513590 6283300 6035990 2969280 8576380 TRUE FALSE FALSE 3697375.162 2618780.575 2550365.504 6460436.943 4382307.334 3697556.139 4940821.625 4555653.988 3565187.26 6438446.303 0.574265124 0.406741076 0.396115054 1.00341552 0.680646716 0.574293232 0.767393466 0.707570394 0.553734099 1 22.61828115 -14 0.052558493 2.302199009 5.01E-11 0.330652885 0.165074877 651.7529327 2.520227153 118.644616 24.55576371 1.00E-14 14 -2.302199009 TAS(ph)NPKVENEDEPVR ddPTM_HeLa_A486_30min_R1 6 TASNPKVENEDEPVR 15 1 Q9UBF8-2 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 T(0.258)AS(0.742)NPKVENEDEPVR;T(0.009)AS(0.991)NPKVENEDEPVR;TAS(1)NPKVENEDEPVR;T(0.003)AS(0.997)NPKVENEDEPVR;T(0.016)AS(0.984)NPKVENEDEPVR;T(0.161)AS(0.839)NPKVENEDEPVR ;;;;; 227.64 3.34E-34 5854260000 3444134 3534812 1788571 2730183 3839174 4813965 6830174 6332746 3013218 6704970 TRUE FALSE FALSE 3202717.992 3254700.624 2481153.591 6356004 3357628.998 4220066.943 5121192.223 4890917.979 3274406.162 5026001.87 0.637229765 0.647572505 0.493663483 1.264624281 0.668051681 0.839646911 1.018939578 0.973122992 0.651493224 1 22.26097978 -5.220756436 24.99994912 0.906141814 0.598296924 0.426022683 0.171864902 506.9532243 311525.5561 0.045140496 0.078184397 6.02E-06 5.220756436 -0.307844891 TAS(ph)PINSPAR ddPTM_HeLa_A486_30min_R1 1 TASPINSPAR 10 0 M0R366;Q9BTV5 M0R366 FSD1 Fibronectin type III and SPRY domain-containing protein 1 1 0 T(0.001)AS(0.999)PINSPAR 120.03 0.00026822 401830000 437030 484440 415910 132890 489690 410220 423690 465310 467460 502850 TRUE FALSE FALSE 406396.4538 446051.2101 576961.4905 309374.6359 428268.514 359611.2272 317678.2807 359369.0706 507979.8092 376933.087 1.07816604 1.183369743 1.530673508 0.820768053 1.136192414 0.954045266 0.842797546 0.953402827 1.347665744 1 18.52394891 -5.27483766 24.99787503 1.002127242 1.255999786 0.305354096 0.176828617 946.6700277 1766249.943 0.049893944 0.074471225 5.31E-06 5.27483766 0.253872544 TAS(ph)PLPLRPDAPVEK ddPTM_HeLa_A485_30min_R1 6 TASPLPLRPDAPVEK 15 1 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 T(0.002)AS(0.998)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK;T(0.098)AS(0.902)PLPLRPDAPVEK;T(0.104)AS(0.896)PLPLRPDAPVEK;T(0.006)AS(0.994)PLPLRPDAPVEK ;;;;; 181.49 4.55E-18 5330230000 5948540 5258970 3953170 8060000 7121520 5643710 8106730 6788750 5252620 10640790 TRUE FALSE FALSE 7271772.201 5873960.795 5415612.088 8500297.391 6412476.464 5939205.929 6374660.91 5123798.418 6306772.654 7988236.882 0.910310036 0.735326316 0.677948359 1.064101818 0.802739898 0.743493967 0.798005994 0.641417937 0.789507465 1 22.92944568 -5.996346865 24.99540945 0.772385196 0.840198465 0.022128668 0.1277172 364.0724795 2491011.652 0.039623686 0.04472222 1.01E-06 5.996346865 0.067813269 TAS(ph)PLPLRPDAPVEK ddPTM_HeLa_A486_30min_R1 4 TASPLPLRPDAPVEK 15 1 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 T(0.012)AS(0.988)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK;TAS(1)PLPLRPDAPVEK ;;; 202.86 1.12E-25 4289100000 7167030 6738760 3501680 2895590 6015840 7057260 8658900 7949320 5715910 8768700 TRUE FALSE FALSE 6664658.208 6204756.115 4857624.274 6741079.855 5261277.252 6186607.014 6492351.635 6139433.368 6211369.681 6572960.445 1.013950755 0.943981965 0.739031417 1.025577426 0.800442555 0.941220789 0.987736301 0.934043863 0.944988142 1 22.64811187 -6.510801452 24.36822034 0.961664718 0.900960327 0.108458365 0.083463917 1000.309344 2018321.749 0.029756606 0.024852972 3.08E-07 6.510801452 -0.060704391 TAS(ph)PLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK ddPTM_HeLa_A485_30min_R1 1 TASPLPLRPDAPVEKSPEETATQVPSLESLTLK 33 2 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 2 0 T(0.102)AS(0.898)PLPLRPDAPVEKS(0.913)PEET(0.084)AT(0.003)QVPSLESLTLK 256.88 6.77E-64 261910000 134610 89383 50219 259590 143630 133560 260060 211870 95176 321460 TRUE FALSE FALSE 164553.5301 99835.56432 68797.09789 273770.7444 129329.6929 140552.9951 204496.0565 159908.5503 114276.9502 241325.938 0.681872539 0.413695955 0.285079583 1.134443925 0.53591294 0.582419761 0.847385317 0.662624795 0.473537785 1 17.88062346 -14 0.177749262 2.418049128 0.552163063 0.187148511 0.226955844 237.9175209 2.279960218 120.4399937 0.746521883 1.00E-14 14 -1.865886065 TAS(ph)PPALPK ddPTM_HeLa_A485_30min_R1 1 TASPPALPK 9 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 0 T(0.002)AS(0.998)PPALPK 78.513 0.0055862 0 227680 252780 168080 321610 324520 228930 368060 427230 225520 537920 TRUE FALSE FALSE 278326.6305 282340.4221 230259.7864 339178.7399 292209.6493 240916.4208 289420.9742 322451.1726 270779.7954 403826.4437 0.68922339 0.699162788 0.570194919 0.839912158 0.723602067 0.596584064 0.716696439 0.798489494 0.670535077 1 18.62337586 -14 0.282427003 3.223467592 0.682988984 0.582901696 0.076244966 167.3275505 1.599861296 218.1781145 0.08699942 1.00E-14 14 -2.540478608 TAS(ph)PPGPPPYGK ddPTM_HeLa_A485_30min_R1 5 TASPPGPPPYGK 12 0 P54259 P54259 ATN1 Atrophin-1 1 0 TAS(1)PPGPPPYGK;TAS(1)PPGPPPYGK;T(0.002)AS(0.998)PPGPPPYGK;T(0.001)AS(0.999)PPGPPPYGK;T(0.003)AS(0.997)PPGPPPYGK ;;;; 151.26 1.15E-07 1361784000 1335486 1305119 1087314 1864770 2016970 1555550 2213240 2436690 1299596 2360640 TRUE FALSE FALSE 1632560.253 1457741.314 1489556.696 1966637.663 1816153.385 1636996.193 1740363.193 1839087.957 1560412.997 1772175.892 0.921217956 0.822571462 0.840524184 1.109730514 1.024815535 0.923721059 0.982048792 1.037757011 0.880506841 1 20.75709037 -5.229075251 24.90583071 0.993503417 0.857551188 0.480941521 0.063107649 536.5045755 412866.7472 0.017186398 0.0297651 5.90E-06 5.229075251 -0.135952229 TAS(ph)PPGPPPYGK ddPTM_HeLa_A486_30min_R1 3 TASPPGPPPYGK 12 0 P54259 P54259 ATN1 Atrophin-1 1 0 T(0.002)AS(0.998)PPGPPPYGK;T(0.003)AS(0.997)PPGPPPYGK;T(0.132)AS(0.868)PPGPPPYGK ;; 147.26 1.68E-07 1256070000 1386730 1345910 821833 554104 1387290 1441850 1747500 1730140 1042650 1744590 TRUE FALSE FALSE 1289527.388 1239255.19 1140068.747 1289982.115 1213283.152 1263969.207 1310257.017 1336224.891 1133027.742 1307733.309 0.986078262 0.947636022 0.871789943 0.986425983 0.927775674 0.966534383 1.001929834 1.021786997 0.866405814 1 20.31863693 -6.444459532 6.304516822 0.975686505 0.94271146 0.070547587 0.049416226 0.622825832 40.64265649 0.017400362 0.015210557 3.59E-07 6.444459532 -0.032975045 TAS(ph)PPPPPK ddPTM_HeLa_A485_30min_R1 5 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.017)AS(0.983)PPPPPK;T(0.002)AS(0.998)PPPPPK;TAS(1)PPPPPK;T(0.017)AS(0.983)PPPPPK;TAS(1)PPPPPK ;;;; 128.27 0.00026491 13820570000 3065210 2836110 2254039 4013840 4092050 3308500 5000290 4870840 2799470 5427680 TRUE FALSE FALSE 3747055.39 3167768.394 3087901.824 4233105.916 3684631.134 3481727.944 3931937.193 3676258.853 3361297.951 4074659.265 0.919599688 0.777431483 0.757830686 1.038885865 0.904279571 0.854483214 0.96497325 0.902224852 0.82492737 1 21.95824799 -5.238320052 24.96582825 0.920636818 0.81420171 0.320370501 0.072130937 963.4893942 1040440.292 0.019402698 0.0335804 5.78E-06 5.238320052 -0.106435109 TAS(ph)PPPPPK ddPTM_HeLa_A486_30min_R1 5 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 TAS(1)PPPPPK;TAS(1)PPPPPK;TAS(1)PPPPPK;TAS(1)PPPPPK;TAS(1)PPPPPK ;;;; 164.97 1.03E-05 11734200000 4672870 4786090 2729480 2148150 4809930 5168830 6408070 6119250 3843370 6204890 TRUE FALSE FALSE 4345325.944 4406822.798 3786407.754 5001001.761 4206623.729 4531152.307 4804703.108 4726030.357 4176516.406 4651145.157 0.93424862 0.947470494 0.814080754 1.075219455 0.904427531 0.97420144 1.033015085 1.016100379 0.897954432 1 22.14915453 -5.260921484 24.99999864 0.984604139 0.903487016 0.302295775 0.060582826 61.62450082 2974675.208 0.016444203 0.026380795 5.48E-06 5.260921484 -0.081117124 TAS(ph)PPPPPKR ddPTM_HeLa_A485_30min_R1 5 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.042)AS(0.958)PPPPPKR;T(0.044)AS(0.956)PPPPPKR;T(0.001)AS(0.999)PPPPPKR;T(0.02)AS(0.98)PPPPPKR;T(0.004)AS(0.996)PPPPPKR ;;;; 142.07 3.77E-06 27434740000 3009370 2964400 2336700 3669410 4017590 3349540 4776250 4886650 2801470 5027870 TRUE FALSE FALSE 3678793.974 3311060.793 3201142.568 3869860.577 3617584.633 3524916.735 3755765.169 3688191.426 3363699.332 3774514.54 0.974640298 0.877215006 0.84809385 1.025260477 0.958423817 0.933872872 0.99503264 0.977130009 0.891160783 1 21.84785967 -5.257058005 24.99345721 0.966962547 0.89770625 0.318937814 0.045929627 454.7035973 2593837.601 0.012514776 0.020745864 5.53E-06 5.257058005 -0.069256297 TAS(ph)PPPPPKR ddPTM_HeLa_A486_30min_R1 6 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.082)AS(0.918)PPPPPKR;T(0.001)AS(0.999)PPPPPKR;T(0.015)AS(0.985)PPPPPKR;T(0.011)AS(0.989)PPPPPKR;T(0.084)AS(0.916)PPPPPKR;T(0.079)AS(0.921)PPPPPKR ;;;;; 116.03 0.00027014 35526090000 4507690 4498110 2560010 1919350 4525680 4692620 5540840 5547190 3313020 5535420 TRUE FALSE FALSE 4191724.209 4141663.382 3551314.431 4468343.799 3958027.014 4113692.255 4154463.227 4284215.931 3600195.241 4149314.802 1.010220822 0.99815598 0.85587973 1.076887152 0.953898945 0.991414836 1.001240789 1.032511664 0.867660183 1 21.98444169 -4.539238976 24.99861522 0.974948982 1.007204786 0.037766019 0.064370306 801.9455409 1225380.132 0.015695734 0.041551358 2.89E-05 4.539238976 0.032255804 TAS(ph)PWK ddPTM_HeLa_A485_30min_R1 8 TASPWK 6 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2;A0A1B0GTD1 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 T(0.001)AS(0.999)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK ;;;;;;; 119.41 0.0066194 22918550000 18894360 15164460 10640550 27401090 22802820 16321210 28874100 26033220 13903210 34502800 TRUE FALSE FALSE 23097345.2 16937811.68 14576932.24 28897942.16 20532491.18 17175763.32 22704912.66 19648531.98 16693456.72 25901886.94 0.891724424 0.653921922 0.562774916 1.115669381 0.792702525 0.663108574 0.876573692 0.758575312 0.644488054 1 24.62655387 -11.35220187 2.227161529 2.378538618 0.773586554 0.167568003 0.151593971 8631359.241 972773.5501 60018822.3 0.038711325 4.44E-12 11.35220187 -1.604952065 TAS(ph)PWK ddPTM_HeLa_A486_30min_R1 11 TASPWK 6 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2;A0A1B0GTD1 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK;TAS(1)PWK ;;;;;;;;;; 129.65 0.0054181 25580740000 37903760 35591880 17791750 19421470 32991580 42607600 53520850 51005420 25660520 55573650 TRUE FALSE FALSE 35246902.16 32771449.81 24681192.08 45214163.67 28853468.4 37351107.51 40129367.24 39392599.31 27884794.53 41657646.32 0.846108825 0.786685104 0.592476874 1.085374899 0.692633189 0.896620688 0.96331336 0.945627101 0.669379982 1 25.31207799 -5.249564316 24.99899648 0.88571009 0.746249777 0.207850133 0.134903657 1301.022004 2738864.257 0.035569037 0.060994749 5.63E-06 5.249564316 -0.139460313 TAS(ph)TDLK ddPTM_HeLa_A485_30min_R1 2 TASTDLK 7 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 TAS(0.961)T(0.039)DLK;T(0.001)AS(0.714)T(0.285)DLK ; 134.77 0.00058958 373260000 995210 809780 466850 1770260 1041060 881140 1624940 1383220 777290 2356980 TRUE FALSE FALSE 1216591.031 904476.7269 639557.2422 1866964.821 937408.411 927275.1279 1277758.294 1043983.126 933284.9733 1769428.263 0.687561658 0.511168916 0.361448529 1.055123206 0.529780399 0.52405353 0.722130601 0.590011558 0.52745002 1 20.75485184 -11.08263251 2.403670264 1.612549556 0.612350058 0.304548315 0.175859851 23208236.72 7676824.928 77784396.7 0.043548234 8.27E-12 11.08263251 -1.000199498 TAS(ph)TDLK ddPTM_HeLa_A486_30min_R1 3 TASTDLK 7 0 E7EX40;Q6WKZ4-2;Q6WKZ4-3;Q6WKZ4 E7EX40 RAB11FIP1 Rab11 family-interacting protein 1 1 0 TAS(0.947)T(0.053)DLK;TAS(0.957)T(0.043)DLK;TAS(0.972)T(0.028)DLK ;; 112.11 0.0028214 1519160000 2836280 2570640 1375340 1987350 2437600 3902960 4864500 4157570 2505680 5582500 TRUE FALSE FALSE 2637471.419 2366933.124 1907908.481 4626651.235 2131853.478 3421452.478 3647350.649 3210982.07 2722874.36 4184605.664 0.63027956 0.565628715 0.455935071 1.105636136 0.509451463 0.81762841 0.871611555 0.767332057 0.650688399 1 21.99666025 -3.413712667 0.096726819 1.120837411 6.28E-18 0.240167541 0.176412926 120.0439659 1.454334091 3.346077897 18.62552444 0.000385733 3.413712667 -1.120837411 TAS(ph)TPT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A486_30min_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 0 T(0.047)AS(0.509)T(0.444)PT(0.998)PPQT(0.002)GGGLEPQANGETPQVAVIVRPDDR 170.04 1.51E-14 482270000 107830 66332 39052 54930 82508 104250 121460 116460 77954 149500 TRUE FALSE FALSE 100271.6738 61075.61074 54173.98025 127879.816 72159.07728 91388.69494 91069.42333 89944.6003 84711.11549 112064.2269 0.894769692 0.545005417 0.483419033 1.141129685 0.643908224 0.815502837 0.812653831 0.802616524 0.755915762 1 16.77396629 -13.99999999 0.102981069 1.743999167 0.611479022 0.144287458 0.174588489 350.2197932 2.433353765 55.85461317 2.705550697 1.00E-14 13.99999999 -1.132520145 TAS(ph)TPTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A485_30min_R1 2 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.07)AS(0.487)T(0.428)PT(0.014)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.075)AS(0.446)T(0.402)PT(0.077)PPQTGGGLEPQANGETPQVAVIVRPDDR ; 148.28 1.03E-09 597260000 170979 186233 156257 162187 241798 180045 234305 266003 152792 235280 TRUE FALSE FALSE 209012.6887 208011.3293 214062.9667 171046.8651 217723.7421 189471.8778 184243.8227 200765.3472 183455.9529 176629.026 1.183342814 1.177673534 1.211935385 0.968396129 1.232661171 1.072710879 1.043111808 1.1366498 1.038651218 1 17.43036292 -1 0.113603318 0.959353345 1.690781175 0.348744137 0.071769368 119.9700289 0.948246551 0.581205703 13.79923244 0.1 1 0.731427831 TASDTDSSYCIPTAGMS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 TASDTDSSYCIPTAGMSPSR 20 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 TASDTDSSYCIPTAGMS(0.83)PS(0.17)R;TASDTDSSYCIPTAGMS(0.974)PS(0.026)R ; 200.67 3.00E-26 241250000 90685 129772 124965 135118 190559 118624 144006 165701 115984 175552 TRUE FALSE FALSE 110857.5654 144947.7065 171194.7537 142499.1542 171586.2769 124834.9692 113237.9417 125062.5699 139260.9249 131790.1172 0.841167515 1.099837451 1.298995383 1.081258271 1.301966191 0.947225573 0.859229388 0.948952566 1.056687162 1 17.00788266 -6.319951839 24.96297112 0.952778949 1.130542686 0.281020029 0.129110746 334.9679536 142905.1731 0.046473824 0.040986068 4.79E-07 6.319951839 0.177763738 TASDTDSSYCIPTAGMS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 TASDTDSSYCIPTAGMSPSR 20 0 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 TASDTDSSYCIPTAGMS(0.97)PS(0.03)R;TASDTDSSYCIPTAGMS(0.998)PS(0.002)R ; 364.6 9.70E-142 229470000 167906 194490 157345 70065 226580 182421 224205 230950 171387 214848 TRUE FALSE FALSE 156136.6565 179077.9041 218273.1978 163114.8609 198160.2236 159915.7517 168106.5376 178367.7266 186242.9632 161048.6624 0.969499865 1.111949031 1.3553245 1.012829653 1.230436942 0.992965414 1.043824488 1.107539324 1.156439056 1 17.29713715 -6.269838582 24.9229436 1.065854299 1.140012399 0.104916203 0.109841506 1603.3992 4757748.478 0.038593502 0.034570843 5.37E-07 6.269838582 0.0741581 TASEGDGGAAAGAAAAGARPVSVAGSPLS(ph)PGPVR ddPTM_HeLa_A485_30min_R1 1 TASEGDGGAAAGAAAAGARPVSVAGSPLSPGPVR 34 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TASEGDGGAAAGAAAAGARPVS(0.001)VAGS(0.002)PLS(0.996)PGPVR 124.9 1.86E-06 377420000 42701 51538 32512 39177 73771 58559 75310 80946 57885 67564 TRUE FALSE FALSE 52199.69013 57564.92078 44539.54174 41317.14031 66426.10021 61625.05869 59219.40327 61093.86658 69501.98855 50721.53822 1.02914249 1.134920643 0.878118908 0.814587683 1.309623141 1.214968253 1.167539577 1.20449554 1.370265788 1 15.63031088 -5.770779905 24.99980328 1.219384022 0.970239183 0.500938642 0.120528012 167.9066101 449398.7362 0.037899562 0.043545747 1.70E-06 5.770779905 -0.249144839 TASES(ph)ISNLSEAGS(ph)IK ddPTM_HeLa_A485_30min_R1 1 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 2 0 TAS(0.002)ES(0.998)ISNLSEAGS(1)IK 184.91 1.92E-17 56707000 91209 74492 55632 144110 102280 80831 126660 116110 66861 186070 TRUE FALSE FALSE 111498.1274 83203.19141 76212.59184 151982.3644 92096.64407 85063.18617 99598.05628 87633.84045 80279.38941 139686.1734 0.798204466 0.595643716 0.54559868 1.088027259 0.659311096 0.608959241 0.713012991 0.62736231 0.574712496 1 17.0918297 -10.80803867 4.130653781 1.049889214 0.690306237 0.277417609 0.150047589 0.066006734 0.003067488 0.139106319 0.035593737 1.56E-11 10.80803867 -0.359582977 TASES(ph)ISNLSEAGS(ph)IK ddPTM_HeLa_A486_30min_R1 1 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 2 0 T(0.039)AS(0.144)ES(0.815)IS(0.004)NLS(0.066)EAGS(0.932)IK 67.449 0.021018 44637000 45384 40530 14736 18927 34672 38794 53359 46281 30444 68667 TRUE FALSE FALSE 42202.81596 37318.25519 20442.17384 44063.01252 30323.11446 34007.99071 40008.01383 35743.82661 33082.91043 51472.33625 0.819912579 0.725015764 0.397148747 0.856052313 0.589114788 0.660704238 0.777272157 0.694427905 0.64273186 1 15.65150965 -11.07123421 2.4721392 1.477077648 0.681966969 0.370093181 0.123353434 7221026.851 2478995.965 19426774.27 0.030392188 8.49E-12 11.07123421 -0.795110679 TASESISNLS(ph)EAGS(ph)IK ddPTM_HeLa_A485_30min_R1 2 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 2 0 TASESIS(0.001)NLS(0.999)EAGS(1)IK;TASESISNLS(1)EAGS(1)IK ; 216.61 2.46E-33 778080000 1144630 815410 549630 1912970 1151580 779090 1570520 1218660 728950 2207530 TRUE FALSE FALSE 1399248.995 910765.1064 752961.009 2017470.707 1036924.652 819881.9477 1234965.572 919781.7242 875243.5787 1657233.398 0.844328262 0.549569607 0.454348199 1.217372707 0.625696207 0.494729317 0.74519713 0.555010372 0.528135373 1 20.66034537 TASESISNLS(ph)EAGS(ph)IK ddPTM_HeLa_A486_30min_R1 2 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 2 0 TASESIS(0.001)NLS(0.999)EAGS(1)IK;TASESISNLS(1)EAGS(1)IK ; 224.8 1.30E-33 642100000 1939550 1904050 851180 1456160 1401020 2154200 2987700 2500400 1349430 3502100 TRUE FALSE FALSE 1803597.561 1753166.144 1180779.691 3390014.07 1225291.008 1888436.706 2240145.859 1931113.503 1466399.679 2625151.365 0.687045168 0.667834307 0.449794898 1.291359468 0.466750613 0.719362979 0.853339693 0.735619869 0.558596239 1 21.32396918 -11.38774826 2.205610171 3.008159518 0.719799169 0.125116314 0.226154857 22590235.89 1658375.797 227495081 0.05994871 4.09E-12 11.38774826 -2.288360349 TASESISNLS(ph)EAGS(ph)IKK ddPTM_HeLa_A486_30min_R1 1 TASESISNLSEAGSIKK 17 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 2 0 TASES(0.005)IS(0.006)NLS(0.989)EAGS(1)IKK 104.67 9.81E-05 103210000 418950 360770 118270 293190 232370 451730 677350 579250 265430 885740 TRUE FALSE FALSE 389583.7685 332181.2713 164067.3114 682561.137 203223.9878 396000.1455 507869.8657 447367.4199 288437.6861 663944.9388 0.5867712 0.500314487 0.247109816 1.028038768 0.306085604 0.59643522 0.764927686 0.673801988 0.43443013 1 19.34070408 -14 0.213370339 3.043866903 0.517522202 0.260129574 0.214594736 204.9994046 2.047120431 179.9639894 0.431688098 1.00E-14 14 -2.526344701 TASESISNLSEAGS(ph)IK ddPTM_HeLa_A485_30min_R1 4 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK ;;; 375.7 5.15E-119 3068920000 1288250 1231850 839090 2484850 1717320 1339180 2283420 2007660 1208000 3552720 TRUE FALSE FALSE 1574816.768 1375904.142 1149504.308 2620591.064 1546337.591 1409297.394 1795548.663 1515278.237 1450434.52 2667092.287 0.590462046 0.515881715 0.430995326 0.982564824 0.579784059 0.528402186 0.673223297 0.56813866 0.543826146 1 21.34683632 -10.25264009 4.948625805 1.000079404 0.603494848 0.420213169 0.140417103 0.000124237 1.88E-05 0.137310993 0.033296167 5.59E-11 10.25264009 -0.396584556 TASESISNLSEAGS(ph)IK ddPTM_HeLa_A486_30min_R1 4 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK ;;; 432.25 4.81E-172 3497440000 2134150 1862040 831490 1301070 1732020 2338660 3034930 2511400 1697080 4080320 TRUE FALSE FALSE 1984557.106 1714485.169 1153465.196 3028956.712 1514773.901 2050139.907 2275558.414 1939609.043 1844184.261 3058581.314 0.648848895 0.560549154 0.377124254 0.990314267 0.495253762 0.670291124 0.743991472 0.634153173 0.602954138 1 21.5444312 -14 0.254544917 3.245302075 0.606193577 0.338453021 0.152477643 218.1604597 2.157558155 255.6503901 0.208918135 1.00E-14 14 -2.639108498 TASIWGT(ph)NT(ph)PNLIS(ph)SSSWNKEK ddPTM_HeLa_A485_30min_R1 1 TASIWGTNTPNLISSSSWNKEK 22 1 Q14587-7;Q14587-4;F5H670 Q14587-7 ZNF268 3 0 T(0.258)AS(0.313)IWGT(0.475)NT(0.945)PNLIS(0.349)S(0.317)S(0.288)S(0.054)WNKEK 59.282 0.011849 1334200000 730390 404830 345000 472390 698450 513020 759200 573240 591000 614820 TRUE FALSE FALSE 892862.7357 452171.3469 472629.8566 498195.4695 628909.8656 539880.9339 596990.7179 432651.9912 709608.279 461556.6889 1.93445953 0.979665895 1.023990916 1.07938089 1.36258423 1.169695829 1.293428808 0.937375628 1.537423888 1 18.81614833 -4.253363307 24.93242985 1.156784203 1.934459928 0.621675048 0.182700948 632.3733573 1952216.33 0.043574597 0.470766504 5.58E-05 4.253363307 0.777675725 TASPLPLRPDAPVEKS(ph)PEETATQVPSLESLTLK ddPTM_HeLa_A486_30min_R1 1 TASPLPLRPDAPVEKSPEETATQVPSLESLTLK 33 2 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 T(0.003)AS(0.003)PLPLRPDAPVEKS(0.699)PEET(0.148)AT(0.148)QVPSLESLTLK 80.048 0.0002784 59188000 53594 43624 20823 37265 40529 58472 82070 70688 37105 89538 TRUE FALSE FALSE 49837.33736 40167.07536 28886.22326 86754.80327 35445.4749 51258.31914 61535.21795 54593.88551 40321.29128 67117.10201 0.742543046 0.5984626 0.430385437 1.292588635 0.528113906 0.763714726 0.916833655 0.813412437 0.600760314 1 16.0343928 -13.99999497 0.033527753 2.138840992 4.60E-06 0.094022658 0.229651904 3027.167022 7.604349385 398.3604032 145.0295931 1.00E-14 13.99999497 -2.138836397 TASRPDDIPDSPSS(ph)PK ddPTM_HeLa_A485_30min_R1 1 TASRPDDIPDSPSSPK 16 1 Q5VZK9-2;Q5VZK9;A0A0U1RQQ1 Q5VZK9-2 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 TASRPDDIPDS(0.091)PS(0.062)S(0.847)PK 85.855 0.00063414 397690000 171230 150720 101130 276780 226040 149840 295000 257640 129670 334320 TRUE FALSE FALSE 209319.5228 168345.3929 138542.1954 291899.7906 203534.6639 157685.3907 231970.8401 194453.386 155693.5796 250980.1767 0.834008189 0.670751751 0.552004534 1.163039226 0.810959123 0.628278268 0.924259609 0.774775875 0.620342139 1 17.93721389 -10.90314196 2.463145571 1.128028749 0.778215427 0.13776865 0.168445842 73709462.05 38318413.31 54620147.84 0.042112432 1.25E-11 10.90314196 -0.349813322 TAST(ph)PT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A485_30min_R1 2 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 0 T(0.021)AS(0.139)T(0.84)PT(0.637)PPQT(0.363)GGGLEPQANGETPQVAVIVRPDDR;T(0.018)AS(0.12)T(0.862)PT(0.999)PPQT(0.001)GGGLEPQANGETPQVAVIVRPDDR ; 143.54 1.91E-09 865610000 124272 132106 112617 207034 195439 122543 206585 191868 119190 265364 TRUE FALSE FALSE 151915.8777 147554.6475 154278.7147 218343.7432 175980.4069 128959.162 162446.4271 144812.0722 143110.3397 199213.6385 0.762577697 0.74068547 0.774438517 1.096028088 0.883375296 0.64734103 0.815438282 0.726918464 0.718376216 1 17.60395689 -6.15989886 21.32085826 0.766452401 0.854582803 0.063482402 0.1272766 30.06094051 6295.860638 0.043295152 0.043295235 6.92E-07 6.15989886 0.088130403 TAST(ph)PT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A486_30min_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 0 T(0.014)AS(0.116)T(0.87)PT(0.739)PPQT(0.261)GGGLEPQANGETPQVAVIVRPDDR 169.01 1.53E-14 428210000 44216 44328 28046 33106 48693 51253 63175 59147 35457 72102 TRUE FALSE FALSE 41116.68673 40815.28784 38906.1623 77072.44108 42585.4699 44929.92596 47367.9468 45680.51927 38530.44131 54047.18989 0.760755311 0.755178723 0.719855415 1.426021246 0.78793125 0.831309196 0.87641831 0.845196935 0.712903694 1 15.72193199 -1.001113721 0.010873297 1.635763402 2.68E-07 0.017735257 0.200010513 93879.7464 79.11139675 5062.036623 6982.132141 0.099743885 1.001113721 -1.635763134 TAST(ph)PTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A485_30min_R1 5 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.002)AS(0.093)T(0.452)PT(0.452)PPQT(0.002)GGGLEPQANGETPQVAVIVRPDDR;TAS(0.032)T(0.921)PT(0.047)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.002)AS(0.076)T(0.857)PT(0.064)PPQTGGGLEPQANGETPQVAVIVRPDDR;TAS(0.166)T(0.824)PT(0.009)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.056)AS(0.195)T(0.71)PT(0.036)PPQT(0.003)GGGLEPQANGETPQVAVIVRPDDR ;;;; 205.84 2.93E-29 13381900000 23792.7 52292.9 4478.7 23835.6 57888.8 60729.3 64531.5 125455.4 14884.7 132165.9 TRUE FALSE FALSE 29085.30403 58408.09977 6135.557504 25137.67847 52125.18781 63908.99224 50743.81785 94687.26644 17871.92276 99219.37346 0.29314138 0.588676362 0.061838301 0.253354537 0.525352922 0.644118079 0.511430541 0.954322358 0.180125334 1 16.59833423 -5.933791013 3.63374925 0.642628906 0.304004386 0.321464272 0.244876023 0.29299755 7.829143587 0.076246429 0.086172581 1.16E-06 5.933791013 -0.338624521 TAST(ph)PTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_A486_30min_R1 5 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JSU8;C9J556;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.007)AS(0.029)T(0.964)PTPPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.002)AS(0.126)T(0.843)PT(0.029)PPQTGGGLEPQANGETPQVAVIVRPDDR;TAS(0.084)T(0.907)PT(0.009)PPQTGGGLEPQANGETPQVAVIVRPDDR;TAS(0.015)T(0.918)PT(0.067)PPQTGGGLEPQANGETPQVAVIVRPDDR;T(0.023)AS(0.127)T(0.847)PT(0.004)PPQTGGGLEPQANGETPQVAVIVRPDDR ;;;; 223.24 3.53E-39 14437880000 106636 81429 79238 36487.9 109438 88182 106865 126655 87748 94841 TRUE FALSE FALSE 99161.36707 74976.26948 109921.0757 84945.6752 95711.26557 77303.00141 80126.2467 97818.42136 95354.06729 71092.19629 1.394827734 1.054634311 1.546176394 1.19486638 1.346297773 1.087362685 1.127075135 1.375937536 1.341273336 1 16.11740359 -6.225442931 24.77853036 1.206122302 1.300338044 0.119778268 0.159032523 1531.488717 1054216.551 0.051715882 0.051713744 5.95E-07 6.225442931 0.094215743 TAT(ph)PPGYKPGS(ph)PPSFR ddPTM_HeLa_A485_30min_R1 2 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 2 0 T(0.358)AT(0.639)PPGY(0.003)KPGS(0.861)PPS(0.139)FR;T(0.004)AT(0.996)PPGYKPGS(0.852)PPS(0.148)FR ; 85.932 0.0011094 1026820000 762380 551120 396350 1452720 953130 737400 1305550 1159420 614300 1820360 TRUE FALSE FALSE 931968.8008 615568.6899 542976.3585 1532078.415 858233.0306 776009.1238 1026608.577 875070.4271 737584.3753 1366577.753 0.681972759 0.45044542 0.397325624 1.121105924 0.628016246 0.567848497 0.751225881 0.640337094 0.539730999 1 20.38213612 -11.40358593 2.099103214 3.505667576 0.643833234 0.244765224 0.188630665 4370267.324 436669.7402 51955444.36 0.048501557 3.95E-12 11.40358593 -2.861834343 TAT(ph)PPGYKPGS(ph)PPSFR ddPTM_HeLa_A486_30min_R1 3 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 2 0 T(0.203)AT(0.796)PPGYKPGS(0.978)PPS(0.021)FR;T(0.239)AT(0.761)PPGY(0.001)KPGS(0.743)PPS(0.257)FR;T(0.13)AT(0.87)PPGYKPGS(0.977)PPS(0.022)FR ;; 71.148 0.0072143 992870000 1253710 1147080 491650 777270 1051440 1498420 1929050 1741110 922950 2222090 TRUE FALSE FALSE 1165831.403 1056181.203 682030.0468 1809523.841 919558.5909 1313560.175 1446381.287 1344697.261 1002952.049 1665664.201 0.699919829 0.634090114 0.409464313 1.086367733 0.552067212 0.788610438 0.868351067 0.807303934 0.6021334 1 20.66766615 -13.99999999 0.059086287 1.939008487 0.309642037 0.193301162 0.176714139 690.4642159 2.977347938 96.54345272 16.49640603 1.00E-14 13.99999999 -1.62936645 TATCHSS(ph)SSPPIDAASAEPYGFR ddPTM_HeLa_A485_30min_R1 1 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TAT(0.001)CHS(0.034)S(0.322)S(0.322)S(0.322)PPIDAASAEPYGFR 126.46 2.53E-06 11555000000 448310 918210 1025100 278900 1211300 685050 752450 928160 700880 544580 TRUE FALSE FALSE 548035.0128 1025586.672 1404327.148 294135.6008 1090698.719 720918.1587 591682.9105 700527.3047 841540.1871 408826.2283 1.340508448 2.508612709 3.435022146 0.719463627 2.667878535 1.763385294 1.447272385 1.713508714 2.058430035 1 18.64112823 -9.28672612 0.186024743 0.374288927 2.400710473 0.149138125 0.720704573 24.53399226 1.417823526 12.08066934 2.974136578 5.17E-10 9.28672612 2.026421546 TATCHSSS(ph)SPPIDAASAEPYGFR ddPTM_HeLa_A485_30min_R1 3 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.191)AT(0.191)CHS(0.191)S(0.155)S(0.237)S(0.034)PPIDAASAEPYGFR;TATCHS(0.01)S(0.07)S(0.511)S(0.408)PPIDAASAEPYGFR;T(0.003)AT(0.003)CHS(0.081)S(0.074)S(0.485)S(0.354)PPIDAASAEPYGFR ;; 152.88 7.07E-10 2780920000 211808 313588 305700 176611 329753 374467 327622 419020 326316 256557 TRUE FALSE FALSE 258923.9589 350259.3887 418791.1512 186258.8117 296921.6335 394073.5131 257622.8833 316254.688 391804.6281 192602.0615 1.344346768 1.818565108 2.174385612 0.967065515 1.541632687 2.046050338 1.337591515 1.642010919 2.034270168 1 17.55526362 -9.712301724 6.136626402 0.999999994 1.6542664 0.232835619 0.357327629 3.95E-08 8.33E-09 0.343084923 0.083210315 1.94E-10 9.712301724 0.654266405 TATCHSSS(ph)SPPIDAASAEPYGFR ddPTM_HeLa_A486_30min_R1 6 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TATCHS(0.007)S(0.067)S(0.667)S(0.26)PPIDAASAEPYGFR;T(0.021)AT(0.102)CHS(0.102)S(0.088)S(0.599)S(0.088)PPIDAASAEPYGFR;T(0.048)AT(0.048)CHS(0.048)S(0.048)S(0.735)S(0.075)PPIDAASAEPYGFR;TATCHS(0.011)S(0.103)S(0.626)S(0.259)PPIDAASAEPYGFR;T(0.089)AT(0.089)CHS(0.089)S(0.089)S(0.571)S(0.071)PPIDAASAEPYGFR;TATCHS(0.015)S(0.08)S(0.546)S(0.359)PPIDAASAEPYGFR ;;;;; 190.37 3.05E-21 17608150000 2843513 3248560 3435390 236578.4 3971030 2066646 2237137 2641906 3140126 1213116 TRUE FALSE FALSE 2644197.423 2991132.275 4765665.011 550766.4712 3472946.389 1811684.229 1677381.661 2040401.676 3412314.65 909343.8575 2.907808087 3.289330268 5.240773302 0.605674593 3.819178367 1.992298308 1.844606577 2.243817517 3.752502006 1 19.79446641 -5.256913074 24.99078255 2.278088886 3.760306371 0.308335054 1.113123813 507.6230029 2802694.499 0.294356434 0.488515341 5.53E-06 5.256913074 1.482217485 TATCHSSSS(ph)PPIDAASAEPYGFR ddPTM_HeLa_A485_30min_R1 4 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TATCHS(0.015)S(0.114)S(0.117)S(0.754)PPIDAASAEPYGFR;TATCHSSS(0.011)S(0.989)PPIDAASAEPYGFR;TATCHS(0.004)S(0.029)S(0.241)S(0.726)PPIDAASAEPYGFR;TATCHS(0.001)S(0.004)S(0.063)S(0.932)PPIDAASAEPYGFR ;;; 237.71 8.78E-49 31065850000 2418400 4665710 4693600 1158790 5529100 2788980 4104850 4195490 3726290 2750760 TRUE FALSE FALSE 2956364.737 5211324.198 6429957.957 1222091.763 4978603.39 2935006.68 3227815.264 3166539.499 4474122.223 2065046.156 1.431621626 2.523587273 3.113711497 0.591798764 2.410892064 1.421278973 1.563071728 1.533398898 2.166596718 1 20.9777426 -5.25000715 24.93943681 1.58290635 2.373034733 0.270548854 0.619259587 994.2067757 2168860.384 0.162176183 0.277788844 5.62E-06 5.25000715 0.790128384 TATCHSSSS(ph)PPIDAASAEPYGFR ddPTM_HeLa_A486_30min_R1 4 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TATCHSS(0.005)S(0.019)S(0.975)PPIDAASAEPYGFR;TATCHS(0.003)S(0.02)S(0.045)S(0.932)PPIDAASAEPYGFR;TATCHS(0.006)S(0.033)S(0.196)S(0.766)PPIDAASAEPYGFR;TATCHS(0.015)S(0.015)S(0.081)S(0.888)PPIDAASAEPYGFR ;;; 251.97 2.87E-50 17226110000 1479330 1599021 1318033 165882 1886720 1212100 1378390 1399750 1649184 742835 TRUE FALSE FALSE 1375636.606 1472308.752 1828410.676 386181.6792 1650069.985 1062563.426 1033502.243 1081057.481 1792136.597 556824.281 2.470503987 2.644117368 3.283640348 0.693543174 2.963358534 1.908256271 1.85606533 1.941469721 3.218495777 1 19.0868626 -10.96693201 3.484361401 0.002287441 2.300847126 0.225189601 0.738785312 0.151371446 0.001436576 0.018910351 0.16799836 1.08E-11 10.96693201 2.298559685 TATESFASDPILYRPVAVALDTK ddPTM_HeLa_A485_30min_R1 4 TATESFASDPILYRPVAVALDTK 23 1 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 238.05 1.69E-43 373423000 748500 560045 497198 1030710 821500 690081 1032100 758410 608302 1412520 FALSE FALSE TRUE 915001.2427 625537.391 681132.2303 1087015.077 739708.5755 726212.5741 811583.4035 572408.7584 730382.6317 1060404.76 0.86287923 0.58990436 0.642332302 1.025094491 0.697571912 0.684844695 0.765352472 0.53980214 0.68877721 1 20.01618362 TATESFASDPILYRPVAVALDTK ddPTM_HeLa_A486_30min_R1 4 TATESFASDPILYRPVAVALDTK 23 1 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 256.33 3.07E-53 421463000 668896 712843 426775 353261 825353 874690 979690 864810 689821 1025810 FALSE FALSE TRUE 622009.8446 656354.7246 592033.7094 822409.4608 721829.5306 766779.641 734561.1999 667911.6417 749615.2397 768940.4991 0.808918044 0.853583243 0.769934358 1.06953589 0.938732622 0.997189824 0.95529004 0.868612906 0.974867679 1 19.55251244 -5.247076757 24.99451022 0.965521347 0.815089011 0.66868445 0.051836717 508.7492958 885347.9679 0.014155558 0.024374675 5.66E-06 5.247076757 -0.150432336 TATESFASDPILYRPVAVALDTKGPEIR ddPTM_HeLa_A485_30min_R1 3 TATESFASDPILYRPVAVALDTKGPEIR 28 2 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;; ;; 223.75 1.51E-50 755016000 548866 736506 455197 543572 853040 928676 1344710 1705710 475904 797028 FALSE FALSE TRUE 670959.3481 822633.9699 623593.3126 573265.962 768108.3424 977300.0394 1057401.723 1287381.948 571413.5675 598343.5878 1.121361308 1.374852153 1.042199374 0.958088252 1.283724532 1.633342546 1.767214933 2.151576409 0.954992381 1 19.19061464 -6.115215605 4.016396126 1.588431918 1.134494101 0.18793692 0.346268211 0.320492235 8.917583605 0.114997917 0.116244878 7.67E-07 6.115215605 -0.453937817 TATESFASDPILYRPVAVALDTKGPEIR ddPTM_HeLa_A486_30min_R1 2 TATESFASDPILYRPVAVALDTKGPEIR 28 2 P14618;P14618-2;P14618-3;H3BTN5;H3BQ34;H3BT25;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 242.56 8.48E-60 286272000 374137 307568 202051 166929 418821 339163 474678 505476 240843 535495 FALSE FALSE TRUE 347911.9283 283195.1915 280290.5583 388619.1481 366288.5648 297320.5174 355908.5438 390390.1493 261719.4652 401403.5665 0.866738508 0.705512395 0.698276203 0.968150711 0.912519458 0.740702231 0.886660143 0.972562732 0.652010812 1 18.61469391 -14 0.166388555 1.607831301 0.786896341 0.155572553 0.112963877 255.5966805 2.38827345 52.19247717 0.439532554 1.00E-14 14 -0.82093496 TATNDEESPLSVS(ph)SPEGTGTWLHYTSGVGTGR ddPTM_HeLa_A485_30min_R1 3 TATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 32 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 TATNDEESPLS(0.015)VS(0.492)S(0.492)PEGTGTWLHYTSGVGTGR;TATNDEESPLS(0.001)VS(0.97)S(0.029)PEGTGTWLHYTSGVGTGR;TATNDEESPLS(0.013)VS(0.797)S(0.189)PEGT(0.001)GTWLHYTSGVGTGR ;; 307 7.65E-94 592270000 165338 230887 246832 147854 328900 192654 273599 264971 218360 249766 TRUE FALSE FALSE 202116.8677 257887.2262 338145.4283 155930.8896 296153.5612 202741.0655 215142.3386 199986.4468 262182.8491 187503.9328 1.077934018 1.375369691 1.803404458 0.831613968 1.579452531 1.081263003 1.147401739 1.066572012 1.3982792 1 17.51656133 -6.329167499 24.99997363 1.143407484 1.334100009 0.119950254 0.263736264 419.631635 154893.7089 0.090304783 0.079641337 4.69E-07 6.329167499 0.190692525 TATNDEESPLSVS(ph)SPEGTGTWLHYTSGVGTGR ddPTM_HeLa_A486_30min_R1 4 TATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 32 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 TATNDEESPLS(0.006)VS(0.807)S(0.18)PEGT(0.006)GTWLHYTSGVGTGR;TATNDEESPLS(0.031)VS(0.938)S(0.031)PEGTGTWLHYTSGVGTGR;TATNDEESPLS(0.005)VS(0.824)S(0.171)PEGTGTWLHYTSGVGTGR;TATNDEESPLS(0.021)VS(0.875)S(0.104)PEGTGTWLHYTSGVGTGR ;;; 310.92 2.54E-109 838000000 434550 473793 413078 46096.1 522918 414388 481635 440104 424469 305893 TRUE FALSE FALSE 404090.289 436247.9172 573032.8642 107314.0504 457328.7484 363265.0217 361124.8288 339901.9266 461262.3147 229295.4018 1.762313094 1.902558507 2.499103165 0.468016583 1.994495942 1.584266492 1.574932711 1.482375678 2.011650958 1 17.8068479 -11.76737923 0.219443471 3.07E-38 1.791038529 0.139338052 0.499560027 106.9058224 2.565120508 54.35389838 1.025881986 1.71E-12 11.76737923 1.791038529 TATNDEESPLSVSS(ph)PEGTGTWLHYTSGVGTGR ddPTM_HeLa_A485_30min_R1 1 TATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 32 0 A0A087WZV0;O43314;O43314-2;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 TATNDEESPLS(0.014)VS(0.396)S(0.59)PEGTGTWLHYTSGVGTGR 204.08 2.74E-29 107190000 35274 51429 47948 34371 66769 44973 58529 56541 52212 45617 TRUE FALSE FALSE 43120.57961 57443.17418 65685.96048 36248.6007 60121.24392 47327.71674 46023.80101 42674.2311 62690.46948 34245.52142 1.259159675 1.677392307 1.918089074 1.058491715 1.75559435 1.38201186 1.343936349 1.246125897 1.830618045 1 15.06362771 -11.15516047 1.974028206 8.44E-05 1.493997066 0.231663294 0.271394131 2700797.098 560898.4796 12075720.94 0.067812799 7.00E-12 11.15516047 1.493912683 TATPPGYKPGS(ph)PPSFR ddPTM_HeLa_A485_30min_R1 3 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 TATPPGYKPGS(0.981)PPS(0.019)FR;TATPPGYKPGS(0.999)PPS(0.001)FR;TATPPGYKPGS(0.92)PPS(0.08)FR ;; 111.62 8.63E-05 2254060000 1743840 1625910 1226840 2468760 2546460 1831940 3027360 3053710 1625520 3195180 TRUE FALSE FALSE 2131751.192 1816046.031 1680699.169 2603622.108 2292925.501 1927857.546 2380539.805 2304782.834 1951746.954 2398680.429 0.888718299 0.757102117 0.700676567 1.085439342 0.955911206 0.803715877 0.992437248 0.960854479 0.813675273 1 21.19380953 -5.245932567 24.97594106 0.939542469 0.77965931 0.404100953 0.090218295 838.6322522 1350734.977 0.024654643 0.042503053 5.68E-06 5.245932567 -0.159883159 TATPPGYKPGS(ph)PPSFR ddPTM_HeLa_A486_30min_R1 2 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 TATPPGYKPGS(0.989)PPS(0.011)FR;TATPPGYKPGS(1)PPSFR ; 121.26 2.35E-05 2097200000 1767500 1573060 892400 856050 1615380 1840700 2388000 2179900 1335530 2616800 TRUE FALSE FALSE 1643607.377 1448404.997 1237961.179 1992927.662 1412763.978 1613613.149 1790497.142 1683584.357 1451294.816 1961536.247 0.837918432 0.738403381 0.631118176 1.016003484 0.720233429 0.82262724 0.912803495 0.858298876 0.739876624 1 20.90355256 -13.99999999 0.137885157 1.624174058 0.741894172 0.231905478 0.103451596 208.5445094 1.770696072 36.11372995 0.661929012 1.00E-14 13.99999999 -0.882279886 TATPQQAQEVHEK ddPTM_HeLa_A485_30min_R1 3 TATPQQAQEVHEK 13 0 P60174;P60174-3;P60174-4;U3KPZ0 P60174 TPI1 Triosephosphate isomerase 0 0 ;; ;; 240.11 5.40E-30 355152000 293926 303473 231545 334669 411704 316746 469721 493213 295738 480498 FALSE FALSE TRUE 359308.8247 338961.5275 317203.1309 352951.12 370713.3042 333330.3308 369361.2711 372251.7384 355089.9039 360718.6915 0.996091506 0.939683846 0.879364276 0.978466402 1.027707499 0.924072799 1.023959334 1.031972413 0.984395631 1 18.46051466 -5.509676291 24.33797949 0.998295526 0.936911111 0.323642557 0.038967421 513.8879547 947323.8948 0.011332757 0.015963268 3.09E-06 5.509676291 -0.061384415 TATPQQAQEVHEK ddPTM_HeLa_A486_30min_R1 4 TATPQQAQEVHEK 13 0 P60174;P60174-3;P60174-4;U3KPZ0 P60174 TPI1 Triosephosphate isomerase 0 0 ;;; ;;; 188.13 2.07E-10 402037000 418546 392726 249823 195255.9 653044 434503 495082 476609 339233 520848 FALSE FALSE TRUE 389208.0868 361604.9615 346561.1561 454565.6029 571133.1321 380898.4376 371207.2472 368095.535 368637.9896 390424.2706 0.996884969 0.926184637 0.887652695 1.164286232 1.46285253 0.97560133 0.950779127 0.942809048 0.944198446 1 18.57468321 -6.492850705 24.98748179 0.955896194 1.086508002 0.149201372 0.149413319 1519.848696 1264726.243 0.059319673 0.05224158 3.21E-07 6.492850705 0.130611808 TATSLPVVNFGS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 TATSLPVVNFGSPLR 15 0 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 TATSLPVVNFGS(1)PLR;TATSLPVVNFGS(1)PLR ; 169.21 3.83E-12 230190000 178568 179796 170062 220670 279070 184743 264220 261240 186823 284150 TRUE FALSE FALSE 218289.8355 200821.5782 232975.0107 232724.6433 251284.8109 194415.8578 207767.2385 197170.4804 224316.6625 213316.6344 1.023313705 0.941424839 1.092155852 1.090982164 1.17798976 0.911395674 0.973985171 0.924308978 1.051566668 1 17.70263695 -6.288178537 24.99471829 0.967628982 1.061231247 0.325057761 0.0666618 977.3255368 913562.1572 0.024800408 0.021878746 5.15E-07 6.288178537 0.093602265 TATSLPVVNFGS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 TATSLPVVNFGSPLR 15 0 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 TATSLPVVNFGS(1)PLR;TATSLPVVNFGS(1)PLR ; 182.17 8.97E-18 390730000 378390 336730 252270 147382 343780 343180 372460 364680 282390 374160 TRUE FALSE FALSE 351866.815 310046.2885 349955.7 343112.7443 300659.9068 300841.9408 279266.5685 281650.3249 306867.7926 280467.9006 1.254570716 1.105460866 1.247756692 1.223358336 1.071994 1.072643037 0.995716686 1.004215899 1.094128033 1 18.09747614 -5.873108014 3.687146952 1.034378773 1.203536101 0.74405022 0.048552073 0.121570157 3.156159261 0.01560226 0.018091286 1.34E-06 5.873108014 0.169157328 TATSLPVVNFGS(ph)PLRR ddPTM_HeLa_A485_30min_R1 2 TATSLPVVNFGSPLRR 16 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 TATSLPVVNFGS(1)PLRR;TATSLPVVNFGS(1)PLRR ; 192.09 2.18E-18 2900700000 841250 966350 927400 946740 1500290 970370 1350570 1386330 931080 1306290 TRUE FALSE FALSE 1028383.16 1079356.226 1270483.852 998458.0089 1350915.86 1021177.073 1062009.686 1046330.394 1117939.216 980655.9435 1.048668666 1.100647208 1.295544947 1.018153222 1.377563526 1.041320434 1.082958497 1.06696992 1.139991271 1 19.90338754 TATSLPVVNFGS(ph)PLRR ddPTM_HeLa_A486_30min_R1 2 TATSLPVVNFGSPLRR 16 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 TATSLPVVNFGS(1)PLRR;TATSLPVVNFGS(1)PLRR ; 239.03 1.20E-41 2702600000 1412920 1338100 969400 437170 1425350 1265770 1566350 1490400 1067700 1504970 TRUE FALSE FALSE 1313881.604 1232064.083 1344777.641 1017753.853 1246569.312 1109612.167 1174432.663 1151068.455 1160249.096 1128115.716 1.164669178 1.092143355 1.192056473 0.902171505 1.105001281 0.983597827 1.041056911 1.020346086 1.028484116 1 20.10548363 -5.241539495 24.99535378 1.016332295 1.143875041 0.583186757 0.05332755 581.4290475 730306.2352 0.013350919 0.023084504 5.73E-06 5.241539495 0.127542745 TAVAPSAVNLADPRT(ph)PTAPAVNLAGAR ddPTM_HeLa_A485_30min_R1 2 TAVAPSAVNLADPRTPTAPAVNLAGAR 27 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TAVAPSAVNLADPRT(0.992)PT(0.008)APAVNLAGAR;TAVAPSAVNLADPRT(0.936)PT(0.064)APAVNLAGAR ; 137.47 2.62E-06 1582310000 486340 646060 552830 514150 888660 614160 812890 833730 519970 711620 TRUE FALSE FALSE 594524.6551 721611.097 757344.8222 542236.7126 800181.8901 646316.4679 639209.4108 629256.4103 624323.2096 534226.2304 1.112870581 1.35075939 1.417648141 1.014994551 1.497833398 1.209817922 1.196514462 1.177883777 1.168649486 1 19.02709129 -8.025604312 0.651197096 1.000670497 1.277801138 0.26485721 0.132840418 1.097944647 1.082981033 0.13062223 0.053935847 9.43E-09 8.025604312 0.277130641 TAVAPSAVNLADPRT(ph)PTAPAVNLAGAR ddPTM_HeLa_A486_30min_R1 3 TAVAPSAVNLADPRTPTAPAVNLAGAR 27 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TAVAPSAVNLADPRT(0.982)PT(0.017)APAVNLAGAR;TAVAPS(0.006)AVNLADPRT(0.991)PT(0.003)APAVNLAGAR;TAVAPSAVNLADPRT(0.963)PT(0.037)APAVNLAGAR ;; 150.23 4.56E-09 1870180000 619460 574120 470570 260532 788780 540530 750900 752400 439074 680530 TRUE FALSE FALSE 576039.0529 528624.6403 652787.3063 606531.6626 689843.8573 473844.9043 563016.8778 581094.9448 477133.2878 510120.8585 1.129220739 1.036273329 1.279671857 1.188996004 1.352314546 0.92888753 1.103693112 1.139131904 0.935333813 1 18.96047957 -6.273795529 24.9089615 1.035247763 1.192465041 0.433709914 0.099789293 836.0841337 1685470.47 0.03607817 0.032041921 5.32E-07 6.273795529 0.157217278 TAVIPINGS(ph)PR ddPTM_HeLa_A485_30min_R1 3 TAVIPINGSPR 11 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR ;; 137.31 1.67E-05 1142480000 936970 1072400 1007640 1166500 1397270 913360 1270900 1274040 910350 1383180 TRUE FALSE FALSE 1145395.744 1197807.851 1380407.967 1230222.941 1258152.893 961182.1173 999361.8327 961579.6924 1093048.895 1038378.682 1.103061691 1.153536636 1.329387816 1.184753658 1.211651313 0.925656636 0.962425222 0.926039517 1.052649591 1 19.98590124 -6.256697854 24.99522358 0.968048599 1.20082509 0.7542765 0.063615598 199.1164963 1049655.63 0.021958789 0.021277141 5.54E-07 6.256697854 0.232776491 TAVIPINGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TAVIPINGSPR 11 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TAVIPINGS(1)PR;TAVIPINGS(1)PR ; 164.22 6.07E-08 982950000 1437000 1404730 952680 534400 1316170 1346680 1546250 1463060 1150130 1621200 TRUE FALSE FALSE 1336273.721 1293414.079 1321583.21 1244110.207 1151083.686 1180540.314 1159361.895 1129953.176 1249824.194 1215240.968 1.099595682 1.064327251 1.087507124 1.023755979 0.947206123 0.971445454 0.954018113 0.929818206 1.028457917 1 20.21281098 -5.497327788 3.168987542 0.967570247 1.081464402 0.76563971 0.027642919 0.111214153 2.274069587 0.00806212 0.011825112 3.18E-06 5.497327788 0.113894154 TAVPS(ph)PVEAAAASDPAAAR ddPTM_HeLa_A485_30min_R1 4 TAVPSPVEAAAASDPAAAR 19 0 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 TAVPS(1)PVEAAAASDPAAAR;T(0.003)AVPS(0.997)PVEAAAASDPAAAR;TAVPS(1)PVEAAAASDPAAAR;TAVPS(1)PVEAAAASDPAAAR ;;; 175.8 4.04E-13 654243000 129610 166659 134777 124077 184479 146960 182474 186252 128105 186430 TRUE FALSE FALSE 158441.2974 186148.3203 184636.6208 130855.0123 166111.623 154654.5984 143486.9392 140573.405 153814.4985 139956.432 1.132075855 1.330044769 1.319243555 0.934969622 1.18688095 1.105019585 1.025225759 1.004408322 1.099017003 1 17.09461826 -5.249177583 24.99956054 1.057837429 1.267413742 0.575034176 0.08237678 547.2004391 1115639.877 0.022176534 0.038073796 5.63E-06 5.249177583 0.209576313 TAVPS(ph)PVEAAAASDPAAAR ddPTM_HeLa_A486_30min_R1 1 TAVPSPVEAAAASDPAAAR 19 0 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 TAVPS(1)PVEAAAASDPAAAR 117.07 2.91E-05 175390000 48892 55967 48123 15070 67979 47121 62049 55449 41278 60364 TRUE FALSE FALSE 45464.92328 51531.97109 66757.51438 35083.7216 59452.43994 41307.69011 46523.68391 42824.47314 44856.01028 45248.4615 1.004783848 1.138866812 1.475354347 0.775357226 1.313910749 0.912908168 1.028182669 0.946429375 0.99132675 1 15.46558112 -6.290519029 24.73693667 0.975697053 1.1396888 0.185315267 0.173882405 1117.674573 950758.8731 0.059279296 0.052288484 5.12E-07 6.290519029 0.163991747 TAVSVTQGGHS(ph)R ddPTM_HeLa_A485_30min_R1 3 TAVSVTQGGHSR 12 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 0 TAVSVTQGGHS(1)R;TAVSVTQGGHS(1)R;TAVSVTQGGHS(1)R ;; 161.45 6.21E-07 854280000 468294 628840 646630 501700 858310 640660 874040 915550 621290 779360 TRUE FALSE FALSE 572464.3847 702377.3678 885845.3455 529106.6006 772853.6427 674203.967 687294.2137 691009.927 745977.2042 585079.8951 0.97843797 1.20048112 1.514058769 0.90433222 1.320936934 1.152328037 1.174701472 1.181052251 1.275000578 1 19.15827412 -10.00664073 4.960755608 0.999997725 1.192702319 0.110581657 0.160531604 3.85E-06 7.70E-07 0.14793459 0.035878984 9.85E-11 10.00664073 0.192704594 TAVSVTQGGHS(ph)R ddPTM_HeLa_A486_30min_R1 2 TAVSVTQGGHSR 12 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 0 TAVSVTQGGHS(1)R;TAVSVTQGGHS(1)R ; 129.05 2.38E-05 545270000 392510 470780 388780 52473 587170 449980 508300 506950 494270 395870 TRUE FALSE FALSE 364997.0759 433473.6782 539326.0279 122159.7958 513521.6635 394466.0427 381117.9638 391528.5516 537113.7216 296741.5753 1.230016642 1.460778382 1.817493984 0.411670645 1.730534937 1.329325162 1.284342996 1.319426006 1.810038654 1 18.17884755 TCDSITPSKS(ph)SPVPVSDTQK ddPTM_HeLa_A485_30min_R1 1 TCDSITPSKSSPVPVSDTQK 20 1 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 1 0 TCDS(0.002)IT(0.01)PS(0.06)KS(0.471)S(0.456)PVPVSDTQK 87.659 0.00034286 220420000 230080 183160 150740 352770 302010 265190 370390 418630 219360 478280 TRUE FALSE FALSE 281260.5022 204578.9687 206504.9988 372040.9318 271940.824 279074.9383 291253.1507 315960.3361 263383.5399 359053.5981 0.783338487 0.569772785 0.575136971 1.036171017 0.757382256 0.777251474 0.811169007 0.879980977 0.733549368 1 18.45383969 -2.792655453 0.06695621 1.243636987 4.80E-15 0.283438283 0.123342904 257.9728709 1.842807646 8.200071115 33.38630991 0.001611924 2.792655453 -1.243636987 TCEEHQLCVVAVLPHILDTGAAGR ddPTM_HeLa_A485_30min_R1 1 TCEEHQLCVVAVLPHILDTGAAGR 24 0 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 0 155.49 5.30E-17 9624900 4854.2 5183 8615.5 7256.5 10732 7580 8065.2 8279.1 6763.8 10734 FALSE FALSE TRUE 5934.000043 5789.106764 11802.73197 7652.904221 9663.484398 7976.877079 6342.004133 6248.637744 8121.232619 8058.211345 0.736391711 0.718410888 1.464683844 0.949702594 1.199209599 0.98990666 0.787023802 0.775437312 1.007820752 1 12.97624393 -6.590612256 7.951933879 0.874937003 1.02621721 0.064112088 0.213945453 0.659853963 67.80627366 0.084883851 0.065639949 2.57E-07 6.590612256 0.151280207 TCEERPAEDGS(ph)DEEDPDSMEAPTR ddPTM_HeLa_A485_30min_R1 6 TCEERPAEDGSDEEDPDSMEAPTR 24 1 Q9H6Y2;D6RGJ8 Q9H6Y2 WDR55 WD repeat-containing protein 55 1 0 TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR ;;;;; 303.18 5.47E-90 9480900000 2100208 2162818 2096150 2375566 2787600 2171153 3029009 2787060 2040140 3170260 TRUE FALSE FALSE 2567392.024 2415740.751 2871603.113 2505337.155 2510056.756 2284831.214 2381836.482 2103529.165 2449577.385 2379972.526 1.078748597 1.015028839 1.206569858 1.052674822 1.05465787 0.960024197 1.000783184 0.883845986 1.029246076 1 21.18251349 -6.069856777 2.115815192 0.967711087 1.092471244 0.461842797 0.058170423 0.277046737 2.463345751 0.021181545 0.022141515 8.51E-07 6.069856777 0.124760157 TCEERPAEDGS(ph)DEEDPDSMEAPTR ddPTM_HeLa_A486_30min_R1 6 TCEERPAEDGSDEEDPDSMEAPTR 24 1 Q9H6Y2;D6RGJ8 Q9H6Y2 WDR55 WD repeat-containing protein 55 1 0 TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR ;;;;; 324.55 3.12E-106 10338260000 2888830 3145590 2317050 1109803 3588820 2981370 3392470 3360320 2641820 3472090 TRUE FALSE FALSE 2686337.935 2896321.992 3214273.813 2583677.47 3138676.731 2613558.882 2543638.124 2595248.491 2870815.085 2602656.064 1.032152489 1.112833168 1.234997531 0.99270799 1.205951402 1.004189112 0.977323957 0.997153841 1.10303283 1 21.31155324 -6.299573407 24.86729784 1.013723536 1.11535927 0.312122078 0.073721242 639.3922168 416947.2529 0.025238358 0.022258832 5.02E-07 6.299573407 0.101635735 TCFS(ph)PNR ddPTM_HeLa_A485_30min_R1 3 TCFSPNR 7 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 1 0 TCFS(1)PNR;TCFS(1)PNR;TCFS(1)PNR ;; 118.41 0.0022232 1414300000 883340 831110 899640 1213290 1212270 795870 1149860 837710 868650 1482910 TRUE FALSE FALSE 1079835.936 928301.0848 1232454.273 1279568.96 1091572.142 837540.5226 904183.0175 632260.309 1042980.087 1113247.828 0.969987013 0.833867412 1.107079881 1.149401713 0.980529326 0.752339687 0.812202813 0.5679421 0.936880415 1 20.08634337 -6.200681548 5.438588825 0.786818972 1.014123718 0.336456606 0.134037541 0.228314893 14.06818427 0.04522013 0.04487693 6.30E-07 6.200681548 0.227304746 TCFS(ph)PNR ddPTM_HeLa_A486_30min_R1 4 TCFSPNR 7 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 1 0 TCFS(1)PNR;TCFS(1)PNR;TCFS(1)PNR;TCFS(1)PNR ;;; 132.84 0.0012371 2221450000 1661060 2146350 1833420 717300 2091800 2446230 2553240 2316980 2064980 2158310 TRUE FALSE FALSE 1544628.272 1976265.409 2543369.325 1669910.65 1829426.939 2144439.014 1914392.347 1789454.233 2243974.129 1617855.128 0.954738311 1.221534225 1.572062468 1.032175639 1.130773026 1.325482719 1.183290341 1.106065804 1.387005604 1 20.625651 -10.21328457 4.306689546 0.999912028 1.215022607 0.122672455 0.170427959 0.000142393 2.60E-05 0.163223664 0.039571395 6.12E-11 10.21328457 0.215110579 TCFS(ph)PNRVIGLSSDLQQVGGASAR ddPTM_HeLa_A485_30min_R1 2 TCFSPNRVIGLSSDLQQVGGASAR 24 1 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 1 0 T(0.181)CFS(0.819)PNRVIGLSSDLQQVGGASAR;T(0.051)CFS(0.949)PNRVIGLSSDLQQVGGASAR ; 233.6 6.10E-40 949830000 93366 130144 121557 92936 180902 138128 204204 244232 116378 146337 TRUE FALSE FALSE 114134.9446 145363.2087 166525.9927 98012.85835 162890.7617 145360.1685 160574.1472 184333.7191 139733.9971 109857.879 1.038932716 1.323193293 1.515831128 0.892178688 1.48274082 1.323165619 1.461653444 1.677928981 1.271952438 1 16.74527882 TCFS(ph)PNRVIGLSSDLQQVGGASAR ddPTM_HeLa_A486_30min_R1 3 TCFSPNRVIGLSSDLQQVGGASAR 24 1 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 1 0 T(0.036)CFS(0.964)PNRVIGLSSDLQQVGGASAR;T(0.019)CFS(0.981)PNRVIGLSSDLQQVGGASAR;T(0.236)CFS(0.764)PNRVIGLSSDLQQVGGASAR ;; 268.27 2.88E-62 1245328000 222046 272595 228748 132598.1 352259 256941 330642 336433 220486 272836 TRUE FALSE FALSE 206481.722 250993.5794 317325.3517 308695.0779 308075.3915 225242.2318 247911.8744 259834.5502 239597.904 204516.0897 1.009611138 1.227255908 1.551591134 1.509392627 1.506362614 1.101342355 1.212187632 1.270484638 1.171535718 1 17.64185482 -6.272911761 24.88083177 1.171832705 1.372271111 0.286154213 0.163507304 1082.996308 2348751.691 0.062246095 0.055365888 5.33E-07 6.272911761 0.200438406 TCGQCKGS(ph)LER ddPTM_HeLa_A486_30min_R1 1 TCGQCKGSLER 11 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;Q8TEU7-5;Q8TEU7-3 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 T(0.005)CGQCKGS(0.995)LER 41.621 0.035109 93160000 66168 62602 36718 28144 62803 68104 77947 85161 52163 96292 TRUE FALSE FALSE 61529.96489 57641.18953 50936.19294 65520.65432 54925.66213 59702.02091 58443.83616 65771.69935 56684.53084 72179.85644 0.852453412 0.798577226 0.70568432 0.907741544 0.760955547 0.827128563 0.809697318 0.911219592 0.785323408 1 16.13930865 -14 0.213073908 1.902253584 0.792176665 0.464614145 0.0591386 125.7487911 1.255557851 48.41338808 0.117044444 1.00E-14 14 -1.110076919 TCLLIVFSK ddPTM_HeLa_A485_30min_R1 2 TCLLIVFSK 9 0 C9JNR4;C9JX21;P61586;E9PLA2;C9JRM1;Q5JR06;Q5JR07;E9PN11;E9PQH6;Q5JR08;Q5JR05;U3KQA9;U3KQV3;P08134;P62745 C9JNR4 RHOA;RHOC;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB 0 0 ; ; 155.42 5.11E-05 48678000 117835 83530 64822 150283 104763 79111 129097 95243 62595 279833 FALSE FALSE TRUE 144046.9892 93298.10689 88802.35527 158492.5798 94332.42787 83253.12963 101514.3713 71884.50491 75157.24234 210075.783 0.685690598 0.44411643 0.422715812 0.754454309 0.449039992 0.396300461 0.483227385 0.342183682 0.357762524 1 17.68055034 -10.21563422 4.862878506 1.000079846 0.47936799 0.595562558 0.128115559 0.000113722 1.83E-05 0.127197264 0.030845163 6.09E-11 10.21563422 -0.520711856 TCLLIVFSK ddPTM_HeLa_A486_30min_R1 2 TCLLIVFSK 9 0 C9JNR4;C9JX21;P61586;E9PLA2;C9JRM1;Q5JR06;Q5JR07;E9PN11;E9PQH6;Q5JR08;Q5JR05;U3KQA9;U3KQV3;P08134;P62745 C9JNR4 RHOA;RHOC;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB 0 0 ; ; 154.84 7.46E-05 36389000 109820 111030 92337 62307 147090 146293 161420 140186 143557 192383 FALSE FALSE TRUE 102122.1851 102231.5784 128092.3593 145053.8448 128640.6006 128244.8571 121031.0087 108268.708 156000.6363 144209.0446 0.708153815 0.70891239 0.888240815 1.005858164 0.892042528 0.889298292 0.839274742 0.750776127 1.081767352 1 17.13780213 -4.779386619 5.318999076 0.908857456 0.705975051 0.472548722 0.088437252 0.143602443 11.58462931 0.02305617 0.054217702 1.66E-05 4.779386619 -0.202882405 TCLS(ph)PGSSEMSLQPDLVR ddPTM_HeLa_A485_30min_R1 1 TCLSPGSSEMSLQPDLVR 18 0 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 0 T(0.004)CLS(0.941)PGS(0.047)S(0.008)EMSLQPDLVR 108.96 1.69E-05 0 34101 59946 77836 29513 66262 60002 50521 65351 56790 50237 TRUE FALSE FALSE 41686.6498 66956.16324 106630.7754 31125.22046 59664.72262 63143.61194 39726.77563 49323.56478 68187.23209 37713.84044 1.105340886 1.775373774 2.827364548 0.82529968 1.582037839 1.674282205 1.053373912 1.307837234 1.808016137 1 15.20280645 -5.296452152 24.99928689 1.348753116 1.889962811 0.229403378 0.486143415 935.5851124 668010.2705 0.137370018 0.203761979 5.05E-06 5.296452152 0.541209695 TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_HeLa_A486_30min_R1 2 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 T(0.177)CNS(0.535)PQNS(0.143)T(0.143)DS(0.003)VSDIVPDSPFPGALGSDTR;T(0.135)CNS(0.614)PQNS(0.205)T(0.045)DSVSDIVPDSPFPGALGSDTR ; 168.26 1.82E-14 407890000 232734 240920 185351 94670 309210 251240 272600 301540 199322 258970 TRUE FALSE FALSE 216420.5484 221828.6218 257123.8711 220396.5444 270425.9985 220244.5632 204392.5967 232885.9246 216599.3914 194122.2264 1.114867434 1.142726549 1.324546271 1.135349354 1.393070766 1.13456644 1.05290672 1.199687068 1.115788725 1 17.56660579 -6.502803851 24.92347418 1.10659339 1.223097026 0.298775745 0.093835564 1030.424967 1279300.691 0.032777704 0.028538164 3.14E-07 6.502803851 0.116503636 TCNSPQNS(ph)TDSVSDIVPDSPFPGALGSDTR ddPTM_HeLa_A485_30min_R1 2 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 T(0.079)CNS(0.366)PQNS(0.542)T(0.012)DSVSDIVPDSPFPGALGSDTR;T(0.225)CNS(0.172)PQNS(0.294)T(0.294)DS(0.015)VSDIVPDSPFPGALGSDTR ; 169.57 1.58E-14 492750000 61759.8 60410.4 63670.8 82064.2 102784.7 61334.4 93714.1 103060.9 63019.3 103975 TRUE FALSE FALSE 75498.05444 67474.87078 87225.27848 86547.15945 92551.09437 64545.77434 73691.31696 77785.05268 75666.69546 78055.94602 0.967230023 0.864442419 1.117471287 1.108783685 1.185702039 0.826916816 0.944083324 0.996529498 0.969390537 1 16.25222092 -6.268590888 24.97835762 0.946960845 1.045643653 0.225661479 0.093774713 1015.306709 3546190.025 0.035804758 0.032233128 5.39E-07 6.268590888 0.098682808 TCNSPQNSTDS(ph)VSDIVPDSPFPGALGSDTR ddPTM_HeLa_A486_30min_R1 2 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 T(0.168)CNS(0.168)PQNS(0.196)T(0.196)DS(0.267)VS(0.004)DIVPDSPFPGALGSDTR;T(0.237)CNS(0.163)PQNS(0.145)T(0.194)DS(0.26)VSDIVPDSPFPGALGSDTR ; 107.45 0.00011615 130413000 72030 85849 65939 32629.6 103196 82362 96837 100722 83568 102391 TRUE FALSE FALSE 66981.06896 79046.01258 91472.34671 75963.35781 90252.19542 72201.01384 72607.35836 77789.79935 90811.74153 76751.62715 0.872699009 1.029893639 1.19179684 0.989729607 1.17589944 0.940709878 0.946004157 1.013526387 1.183189789 1 16.22790972 -4.279217022 4.834254758 1.053040152 0.865104021 0.2596046 0.091592938 0.226286979 14.88185103 0.023041309 0.137060554 5.26E-05 4.279217022 -0.187936131 TCNVLVALEQQS(ph)PDIAQGVHLDR ddPTM_HeLa_A485_30min_R1 2 TCNVLVALEQQSPDIAQGVHLDR 23 0 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 1 0 TCNVLVALEQQS(1)PDIAQGVHLDR;TCNVLVALEQQS(1)PDIAQGVHLDR ; 220.78 3.77E-38 331590000 252652 338350 272608 284821 358360 283589 375240 367130 250818 368450 TRUE FALSE FALSE 308853.5658 377917.0892 373457.0434 300380.05 322680.4201 298437.2815 295066.9086 277090.7919 301154.872 276602.1958 1.116598387 1.366283764 1.350159359 1.085964083 1.166586618 1.078940392 1.066755481 1.001766421 1.088765297 1 18.07745308 -5.68609333 1.298549789 1.048055095 1.28071714 0.565591692 0.080550394 0.314756343 1.108199716 0.031174882 0.047990605 2.06E-06 5.68609333 0.232662045 TCNVLVALEQQS(ph)PDIAQGVHLDR ddPTM_HeLa_A486_30min_R1 2 TCNVLVALEQQSPDIAQGVHLDR 23 0 P31153;P31153-2 P31153 MAT2A S-adenosylmethionine synthase isoform type-2 1 0 TCNVLVALEQQS(1)PDIAQGVHLDR;TCNVLVALEQQS(1)PDIAQGVHLDR ; 251.27 7.03E-50 371420000 293100 294200 207869 95162 264533 270170 297470 281390 249150 337130 TRUE FALSE FALSE 272555.2036 270886.5205 288361.4437 221541.9452 231352.8045 236839.1723 223039.8597 217323.6397 270746.5226 252710.4537 1.078527618 1.071924476 1.141074457 0.876663161 0.915485692 0.937195786 0.882590556 0.859970914 1.07137049 1 17.94712582 -5.260829877 24.99996917 0.926044696 1.094650417 0.587893399 0.062007233 35.69284001 1463979.619 0.0166784 0.026797279 5.48E-06 5.260829877 0.168605721 TCPSLS(ph)PTSPLNNK ddPTM_HeLa_A486_30min_R1 1 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 TCPS(0.015)LS(0.941)PT(0.017)S(0.027)PLNNK 91.207 0.00057731 0 133110 147950 160650 70448 227960 137290 175690 175920 147850 154180 TRUE FALSE FALSE 123779.6764 136225.9032 222857.9824 164006.5042 199367.1312 120352.5557 131730.5037 135866.8563 160665.757 115572.3245 1.071014856 1.17870696 1.928298867 1.419081125 1.725042151 1.041361383 1.139810109 1.175600274 1.390175008 1 16.81843644 -6.277529059 24.96532967 1.159765667 1.471806616 0.286763855 0.248015518 1165.943293 1809114.694 0.090932921 0.08045012 5.28E-07 6.277529059 0.312040949 TCPSLSPTS(ph)PLNNK ddPTM_HeLa_A485_30min_R1 2 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 TCPSLS(0.005)PT(0.102)S(0.893)PLNNK;TCPSLSPT(0.187)S(0.813)PLNNK ; 306.27 7.77E-59 290990000 596870 545040 432730 805860 774900 604120 934420 885590 514910 970520 TRUE FALSE FALSE 729641.6723 608777.6868 592814.8344 849882.0913 697748.2352 635750.7891 734773.5335 668397.6639 618247.714 728587.2251 1.001447249 0.835559101 0.813649779 1.16647954 0.957672892 0.872580203 1.008490827 0.917388668 0.848556896 1 19.47474217 TCPSLSPTS(ph)PLNNK ddPTM_HeLa_A486_30min_R1 2 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 TCPSLSPT(0.157)S(0.843)PLNNK;TCPSLS(0.003)PT(0.146)S(0.851)PLNNK ; 200.05 8.73E-22 355030000 829850 760790 444630 375620 691300 858500 1101990 967010 697680 1090380 TRUE FALSE FALSE 771681.8003 700502.2297 616802.6436 874462.3428 604590.7079 752586.9986 826260.4463 746842.9327 758155.4641 817341.7508 0.944136036 0.857049366 0.754644728 1.069885812 0.739703689 0.920773958 1.010911832 0.913746217 0.927586855 1 19.64057991 -6.517808361 24.91976631 0.957297633 0.871915824 0.176846831 0.091290129 398.6032753 1959062.821 0.032978206 0.026293747 3.04E-07 6.517808361 -0.085381809 TCS(ph)FGGFDLTNR ddPTM_HeLa_A485_30min_R1 4 TCSFGGFDLTNR 12 0 O94885;A0A1B0GWB9 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 TCS(1)FGGFDLTNR;TCS(1)FGGFDLTNR;T(0.007)CS(0.993)FGGFDLTNR;TCS(1)FGGFDLTNR ;;; 279.39 8.02E-41 784910000 1041340 1107310 973290 1127890 1452590 1020130 1629220 1456570 938350 1704810 TRUE FALSE FALSE 1272982.49 1236800.272 1333350.473 1189503.775 1307965.039 1073542.429 1281123.837 1099343.924 1126668.238 1279832.242 0.99464793 0.966376867 1.041816599 0.929421635 1.021981629 0.838814959 1.001009191 0.858975019 0.880324937 1 20.28752329 -6.240869343 24.81372107 0.912334772 0.988908282 0.299036512 0.057269375 907.6677995 1094924.237 0.017807694 0.017789258 5.74E-07 6.240869343 0.07657351 TCS(ph)FGGFDLTNR ddPTM_HeLa_A486_30min_R1 4 TCSFGGFDLTNR 12 0 O94885;A0A1B0GWB9 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 TCS(1)FGGFDLTNR;TCS(1)FGGFDLTNR;T(0.16)CS(0.84)FGGFDLTNR;TCS(1)FGGFDLTNR ;;; 255.63 2.99E-33 901410000 834220 968260 577981 366742 887510 923160 1109940 1187430 673280 1045690 TRUE FALSE FALSE 775745.4859 891531.5513 801790.7221 853793.9101 776190.2201 809269.9052 832221.2723 917078.1104 731640.4525 783842.4177 0.989670205 1.137386203 1.022897848 1.08924178 0.990237582 1.03243954 1.061720128 1.169977651 0.933402475 1 19.58020412 TCS(ph)LPDLSK ddPTM_HeLa_A485_30min_R1 1 TCSLPDLSK 9 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 0 T(0.001)CS(0.999)LPDLSK 105.13 0.0011748 853700000 1884100 1600900 1121400 2809100 2207300 1820000 2675100 2513000 1549200 3778600 TRUE FALSE FALSE 2303211.545 1788111.329 1536252.525 2962554.02 1987533.462 1915292.386 2103543.031 1896682.81 1860110.23 2836664.56 0.811943568 0.630356988 0.541570035 1.044379396 0.700658615 0.675191707 0.741555086 0.668631334 0.655738523 1 21.43576413 -10.95823312 2.628298234 1.218952578 0.718012321 0.303547529 0.127733869 51461917.01 23128637.43 68684990.21 0.031757814 1.10E-11 10.95823312 -0.500940257 TCS(ph)LPDLSK ddPTM_HeLa_A486_30min_R1 1 TCSLPDLSK 9 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 0 T(0.004)CS(0.995)LPDLSK 105.83 0.0011413 995950000 2079200 2004900 965610 979610 1863300 2210600 2832400 2679200 1618700 2877900 TRUE FALSE FALSE 1933458.817 1846024.422 1339520.052 2280581.587 1629587.539 1937878.648 2123703.562 2069204.647 1759010.219 2157255.108 0.896258773 0.855728382 0.620937249 1.05716824 0.755398624 0.898307595 0.984447112 0.959184029 0.815392771 1 21.04076536 -6.514079521 22.45868919 0.937072214 0.83720068 0.156571525 0.112772965 215.9785963 551262.7909 0.040557285 0.033160407 3.06E-07 6.514079521 -0.099871535 TCSDGGPSSELAHS(ph)PTNSGK ddPTM_HeLa_A485_30min_R1 1 TCSDGGPSSELAHSPTNSGK 20 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 TCSDGGPSSELAHS(0.989)PT(0.011)NSGK 127.92 3.80E-08 0 58878 58967 51461 61623 82592 49151 85511 88887 50003 98449 TRUE FALSE FALSE 71975.20797 65862.67771 70498.56537 64989.30845 74368.85048 51724.47036 67240.87629 67087.32388 60038.14345 73907.47612 0.973855579 0.891150411 0.953875969 0.879333348 1.006242594 0.699854373 0.909798032 0.907720401 0.812341952 1 16.17343269 TCSDGGPSSELAHS(ph)PTNSGK ddPTM_HeLa_A486_30min_R1 1 TCSDGGPSSELAHSPTNSGK 20 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 TCSDGGPSSELAHS(0.939)PT(0.059)NS(0.002)GK 105.16 1.17E-05 0 53027 56461 37899 10566 53200 57128 59701 55422 39794 48398 TRUE FALSE FALSE 49310.08113 51986.82473 52574.50777 24598.18198 46527.15993 50080.12819 44763.17835 42803.62045 43243.37596 36278.82578 1.359197275 1.432979806 1.449178871 0.678031371 1.282488033 1.380423074 1.233865137 1.179851319 1.191972867 1 15.14684014 TCYPLESRPS(ph)LSLGTITDEEMK ddPTM_HeLa_A486_30min_R1 1 TCYPLESRPSLSLGTITDEEMK 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 T(0.001)CYPLES(0.02)RPS(0.971)LS(0.007)LGT(0.001)ITDEEMK 103.86 5.01E-07 0 16382 16371 30381 9780.1 30932 23010 19507 33332 14100 28137 TRUE FALSE FALSE 15233.7064 15073.70234 42145.33683 22768.56706 27052.22013 20171.26015 14626.14228 25743.03123 15322.19935 21091.31206 0.722274003 0.714687749 1.998232102 1.079523502 1.282623862 0.956377683 0.693467634 1.220551437 0.72646971 1 14.36436123 -6.369568801 6.15573577 0.915280289 1.176186151 0.099518607 0.360719538 0.605829003 29.68559006 0.132681244 0.116588352 4.27E-07 6.369568801 0.260905862 TDAEAT(ph)DTEATET ddPTM_HeLa_A486_30min_R1 1 TDAEATDTEATET 13 0 Q9Y3D3 Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" 1 0 TDAEAT(0.982)DT(0.018)EATET 160.36 1.01E-06 0 83964 120230 97114 51806 139950 126900 137380 131410 99588 116990 TRUE FALSE FALSE 78078.55719 110702.5369 134719.1416 120606.9861 122396.166 111244.3682 103006.0709 101490.8117 108220.368 87694.94252 0.89034276 1.262359422 1.536224755 1.375301502 1.395703817 1.268538014 1.174595341 1.157316588 1.234054837 1 16.42020602 -6.732295396 3.204029833 1.150379176 1.310291635 0.156442907 0.164684945 0.495957664 10.4885688 0.07497371 0.052673363 1.85E-07 6.732295396 0.159912459 TDALTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 TDALTSSPGR 10 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 TDALT(0.036)S(0.199)S(0.766)PGR 61.213 0.027667 1231400000 1837200 1844500 1759200 2454900 1965900 1411200 1862700 1452600 1674700 3133200 TRUE FALSE FALSE 2245878.802 2060198.23 2410001.286 2589004.971 1770168.093 1485088.25 1464718.928 1096347.572 2010796.929 2352150.902 0.954819183 0.875878426 1.024594674 1.1006968 0.752574204 0.631374564 0.622714693 0.466104267 0.854875819 1 21.16554919 -5.907270221 5.571801385 0.677508411 0.981982555 0.436280809 0.146197383 0.17428522 8.414507467 0.044754563 0.05096526 1.24E-06 5.907270221 0.304474145 TDALTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 2 TDALTSSPGR 10 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 TDALTS(0.007)S(0.993)PGR;TDALT(0.011)S(0.051)S(0.938)PGR ; 99.174 0.0018303 3011300000 2607200 2858000 1670670 666630 2126770 2699630 2401590 2324400 2645100 3208300 TRUE FALSE FALSE 2424448.744 2631521.671 2317598.166 1551948.33 1860010.675 2366577.098 1800686.781 1795184.861 2874379.398 2404920.797 1.008119996 1.094223841 0.963690018 0.645322013 0.773418683 0.984056149 0.74875097 0.746463195 1.19520751 1 21.19755795 -5.005725247 23.77375356 0.851590639 1.04561829 0.179767181 0.152216623 198.796711 825518.9742 0.039738304 0.078611628 9.87E-06 5.005725247 0.194027651 TDASSASS(ph)FLDSDELER ddPTM_HeLa_A486_30min_R1 1 TDASSASSFLDSDELER 17 0 G3XAC6;Q14498-2;Q14498;H0Y4X3;A0A0U1RQH7;A0A0U1RQW2;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 TDASSAS(0.012)S(0.988)FLDSDELER 210.9 1.51E-25 43516000 50700 58912 41281 23869 69274 56366 59611 65627 48857 65239 TRUE FALSE FALSE 47146.19182 54243.59857 57266.10874 55568.23827 60585.00897 49412.13601 44695.6973 50685.16473 53091.9641 48902.72977 0.964080984 1.109214124 1.171020698 1.136301359 1.23888808 1.010416724 0.913971419 1.036448578 1.085664632 1 15.57762738 -6.415850653 12.48082143 1.004949297 1.126360358 0.364034614 0.075626236 0.84887825 95.09066379 0.02781736 0.024528161 3.84E-07 6.415850653 0.121411061 TDASSASSFLDS(ph)DELER ddPTM_HeLa_A486_30min_R1 2 TDASSASSFLDSDELER 17 0 G3XAC6;Q14498-2;Q14498;H0Y4X3;A0A0U1RQH7;A0A0U1RQW2;Q14498-3 G3XAC6;Q14498-3 RBM39 RNA-binding protein 39 1 0 TDASSASSFLDS(1)DELER;TDASSASSFLDS(1)DELER ; 250.27 4.26E-43 113947000 85352 95659 72680 31017 97307 84291 101854 100097 80654 105961 TRUE FALSE FALSE 79369.26556 88078.63246 100823.6424 72209.14351 85101.84871 73892.03343 76369.0519 77307.0982 87645.15366 79427.67591 0.99926461 1.108916149 1.269376716 0.909118172 1.071438233 0.930305874 0.96149171 0.973301778 1.10345862 1 16.27735417 -5.279416336 24.99703825 0.990995035 1.124158883 0.354567062 0.082273878 868.5215026 1207681.634 0.023027582 0.034235099 5.26E-06 5.279416336 0.133163848 TDATDGKDYNASASTIS(ph)PPSSMEEDKFSR ddPTM_HeLa_A485_30min_R1 3 TDATDGKDYNASASTISPPSSMEEDKFSR 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TDATDGKDYNAS(0.008)AS(0.157)T(0.129)IS(0.702)PPS(0.002)S(0.002)MEEDKFSR;TDATDGKDYNASAS(0.013)T(0.059)IS(0.925)PPS(0.002)S(0.001)MEEDKFSR;TDATDGKDYNASAS(0.003)T(0.002)IS(0.995)PPSSMEEDKFSR ;; 273.54 1.96E-77 2454170000 1672880 880067 718716 2917200 1798960 1269530 2571390 1724810 1151650 3980360 TRUE FALSE FALSE 2045006.385 982983.1801 984598.9567 3076559.249 1619849.226 1336000.628 2021991.52 1301797.643 1382775.591 2988129.505 0.684376758 0.32896271 0.329503442 1.029593679 0.542094719 0.447102652 0.676674661 0.435656367 0.462756246 1 21.51081124 -10.2418947 4.386295446 1.000214178 0.547051527 0.318255154 0.198223644 0.000420766 7.27E-05 0.19451456 0.04715464 5.73E-11 10.2418947 -0.453162651 TDATDGKDYNASASTIS(ph)PPSSMEEDKFSR ddPTM_HeLa_A486_30min_R1 3 TDATDGKDYNASASTISPPSSMEEDKFSR 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TDATDGKDYNAS(0.002)AS(0.097)T(0.097)IS(0.463)PPS(0.167)S(0.167)MEEDKFS(0.006)R;TDATDGKDYNAS(0.003)AS(0.07)T(0.07)IS(0.829)PPS(0.014)S(0.014)MEEDKFS(0.001)R;TDATDGKDYNASAS(0.03)T(0.03)IS(0.94)PPSSMEEDKFSR ;; 167.76 1.91E-14 3134550000 2603280 2486180 1035536 1331330 2089070 3322860 4219570 3782730 1965870 3967740 TRUE FALSE FALSE 2420803.515 2289166.042 1436523.272 3099403.522 1827039.361 2912919.318 3163788.956 2921484.955 2136273.194 2974192.078 0.813936508 0.769676599 0.482996133 1.042099313 0.614297703 0.979398519 1.063747355 0.982278507 0.718270084 1 21.50406639 -6.28219249 24.55648588 0.954819352 0.747988374 0.293135938 0.158314617 850.3970033 1006243.768 0.054742964 0.048336348 5.22E-07 6.28219249 -0.206830978 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(ph)PEAR ddPTM_HeLa_A485_30min_R1 2 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEAR 42 0 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(1)PEAR;TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(1)PEAR ; 233.42 4.73E-42 87307000 211432 215150 241160 266910 322630 196699 284440 249490 237810 354780 TRUE FALSE FALSE 258464.319 240309.9209 330375.1195 281490.6174 290507.8244 206997.8555 223667.0703 188302.1863 285536.2857 266339.8752 0.970430427 0.902267904 1.240426801 1.056884994 1.090741009 0.777194385 0.839780638 0.706999604 1.072074865 1 18.02290891 -6.253296707 24.9445294 0.858433044 1.05454629 0.309817955 0.127159364 671.3930469 2056768.772 0.042221008 0.04150387 5.58E-07 6.253296707 0.196113246 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(ph)PEAR ddPTM_HeLa_A486_30min_R1 1 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEAR 42 0 Q15424;Q15424-4;Q15424-3;Q15424-2;Q14151 Q15424;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.001)EAPS(0.999)PEAR 223.89 9.09E-41 39532000 43976 57276 43908 25911 65542 60704 66209 68671 53998 57995 TRUE FALSE FALSE 40893.50949 52737.24116 60910.3535 60322.11747 57321.11121 53214.95767 49642.80791 53036.11238 58678.59012 43472.67452 0.940671582 1.213112415 1.401118155 1.387586987 1.318554974 1.224101307 1.141931304 1.219987336 1.349781001 1 15.40782124 -6.516370074 23.46566711 1.19436563 1.266380315 0.046352223 0.144854738 500.9633281 1806148.837 0.056443835 0.045457952 3.05E-07 6.516370074 0.072014686 TDCSSGDASRPSSDNADS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TDCSSGDASRPSSDNADSPK 20 1 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 TDCSSGDASRPSSDNADS(1)PK;TDCSSGDASRPS(0.002)S(0.002)DNADS(0.996)PK ; 101.41 7.73E-05 902870000 265650 227331 180196 584120 358440 209132 425190 383800 207759 716200 TRUE FALSE FALSE 324742.926 253915.3829 246857.999 616028.9965 322752.455 220081.8281 334344.683 289672.4482 249454.3256 537664.5207 0.603988014 0.472256162 0.459130163 1.145749762 0.600285945 0.409329274 0.621846282 0.538760579 0.46395906 1 19.03634675 -10.64141519 4.562706071 1.009386306 0.59391982 0.277547558 0.198094517 0.019914862 0.001565116 0.201950089 0.048341218 2.28E-11 10.64141519 -0.415466486 TDCSSGDASRPSSDNADS(ph)PK ddPTM_HeLa_A486_30min_R1 1 TDCSSGDASRPSSDNADSPK 20 1 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 TDCSSGDASRPSSDNADS(1)PK 129.27 2.46E-07 319440000 196050 178140 93817 230810 173480 224520 372890 302770 149970 459040 TRUE FALSE FALSE 182307.9074 164023.5376 130145.4549 537337.3445 151720.5208 196821.0052 279588.978 233835.8804 162969.5204 344093.3962 0.529821 0.47668319 0.378227122 1.561603188 0.440928313 0.571998787 0.812538052 0.679570963 0.473620018 1 18.39244068 TDDEVVQR ddPTM_HeLa_A485_30min_R1 1 TDDEVVQR 8 0 P14625;Q96GW1;A0A1W2PRR1;F8VPC7 P14625 HSP90B1 Endoplasmin 0 0 140.09 0.00088005 11890000 20597 21768 23641 27872 31525 21468 30568 25582 28362 38435 FALSE FALSE TRUE 25178.73159 24313.57824 32386.78968 29394.57678 28386.26031 22592.03128 24036.89708 19307.97439 34053.99325 28853.86184 0.872629519 0.842645549 1.122442114 1.018739777 0.983794144 0.782981197 0.833056497 0.669164304 1.180223065 1 14.8164768 -6.228457563 23.69561674 0.868655972 0.972476741 0.048684043 0.146394434 832.0517205 597782.5688 0.048062487 0.048057824 5.91E-07 6.228457563 0.103820769 TDDT(ph)S(ph)GEDNDEKEAVASK ddPTM_HeLa_A486_30min_R1 1 TDDTSGEDNDEKEAVASK 18 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 2 0 T(0.011)DDT(0.989)S(1)GEDNDEKEAVASK 154.65 1.54E-08 257210000 461370 424470 135160 470570 388530 614920 939630 787820 314900 1135300 TRUE FALSE FALSE 429030.3455 390833.4513 187497.5717 1095510.741 339796.9445 539057.4224 704524.6356 608450.584 342195.7855 851013.4904 0.504140475 0.45925647 0.220322679 1.287301263 0.399285027 0.633429938 0.827865414 0.714971726 0.402103832 1 19.69882248 -14 0.053257769 2.259143055 2.25E-12 0.145805829 0.282019687 1039.075742 4.068060767 187.2688344 37.9692138 1.00E-14 14 -2.259143055 TDDT(ph)SGEDNDEKEAVASK ddPTM_HeLa_A486_30min_R1 1 TDDTSGEDNDEKEAVASK 18 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 T(0.033)DDT(0.824)S(0.143)GEDNDEKEAVASK 74.732 0.00074587 0 67774 56305 36604 50699 82356 78943 96219 96936 50838 135870 TRUE FALSE FALSE 63023.39259 51843.18674 50778.04909 118029.8342 72026.14254 69203.81529 72143.9885 74865.7889 55244.67877 101847.2676 0.618802979 0.509028744 0.498570558 1.158890532 0.707197593 0.679486224 0.708354678 0.735079012 0.542426715 1 16.63604775 TDDTAQVTSDYETNNNS(ph)DSS(ph)DIVQNEDETECLREPLRK ddPTM_HeLa_A486_30min_R1 1 TDDTAQVTSDYETNNNSDSSDIVQNEDETECLREPLRK 38 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 2 0 TDDTAQVTSDYETNNNS(0.988)DS(0.053)S(0.959)DIVQNEDETECLREPLRK 226.34 4.33E-40 471700000 191320 192330 111280 96981 252960 204280 269760 288760 160360 271990 TRUE FALSE FALSE 177909.456 177089.0703 154370.5962 225776.6691 221231.398 179078.0106 202263.1948 223015.6516 174260.1339 203881.9336 0.872610205 0.868586378 0.757156818 1.107389287 1.085095644 0.878341731 0.99206041 1.09384705 0.854711012 1 17.63737442 -5.256267641 24.99997326 1.003486677 0.836364659 0.453122159 0.084961652 405.0114698 1957802.526 0.023420436 0.039064889 5.54E-06 5.256267641 -0.167122018 TDDTAQVTSDYETNNNS(ph)DSSDIVQNEDETECLREPLRK ddPTM_HeLa_A485_30min_R1 2 TDDTAQVTSDYETNNNSDSSDIVQNEDETECLREPLRK 38 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 TDDTAQVTSDYETNNNS(0.95)DS(0.025)S(0.025)DIVQNEDETECLREPLRK;TDDTAQVTSDYETNNNS(0.867)DS(0.112)S(0.021)DIVQNEDETECLREPLRK ; 239.61 7.62E-52 288630000 54952 60343 55080 80498 89543 68471 93578 86860 73796 126291 TRUE FALSE FALSE 67175.88282 67399.58894 75456.38407 84895.40191 80627.78452 72056.03568 73584.29584 65557.44881 88606.1803 94808.97791 0.708539258 0.710898803 0.795878046 0.895436316 0.850423518 0.760012789 0.77613215 0.691468785 0.934575841 1 16.53273606 -14 0.203426441 1.982160795 0.75694819 0.456598809 0.073163813 145.2731257 1.441631235 57.9272624 0.180806067 1.00E-14 14 -1.225212606 TDDTAQVTSDYETNNNS(ph)DSSDIVQNEDETECLREPLRK ddPTM_HeLa_A486_30min_R1 1 TDDTAQVTSDYETNNNSDSSDIVQNEDETECLREPLRK 38 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 TDDTAQVTSDYETNNNS(0.971)DS(0.028)S(0.001)DIVQNEDETECLREPLRK 283.69 1.38E-79 113510000 76568 79320 53991 35142 96344 100680 116460 117520 73987 133400 TRUE FALSE FALSE 71200.9786 73034.39432 74897.76113 81812.35198 84259.63715 88259.12524 87320.47621 90763.26144 80400.25273 99995.77171 0.712039893 0.730374826 0.749009282 0.818158114 0.842632 0.882628572 0.873241685 0.907670993 0.804036524 1 16.60957947 -1.382267054 0.141054346 1.009625184 7.48E-13 0.804804377 0.037202977 28.48457694 0.295513382 0.16285227 5.699259088 0.041469896 1.382267054 -1.009625184 TDEERPPVEHS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 TDEERPPVEHSPEK 14 1 Q15170-2 Q15170-2 1 0 TDEERPPVEHS(1)PEK;TDEERPPVEHS(1)PEK ; 171.68 1.89E-12 1585020000 1791890 1321120 944260 2918500 1584040 1224470 2144030 1538230 1094900 3454900 TRUE FALSE FALSE 2190489.749 1475613.492 1293581.068 3077930.265 1426327.416 1288581.356 1685940.475 1160976.681 1314636.387 2593657.013 0.844556446 0.568931622 0.498747931 1.186714454 0.54992908 0.496820262 0.650024451 0.447621515 0.506865935 1 21.30655628 -4.24703506 22.81173127 0.642088239 0.844556922 0.053214829 0.231598435 2333.959889 3696011.792 0.057495976 1.067225774 5.66E-05 4.24703506 0.202468684 TDEERPPVEHS(ph)PEK ddPTM_HeLa_A486_30min_R1 1 TDEERPPVEHSPEK 14 1 Q15170-2 Q15170-2 1 0 TDEERPPVEHS(1)PEK 145.05 5.23E-08 1067200000 584560 574950 296660 301840 467020 643510 785080 656900 488770 1026000 TRUE FALSE FALSE 543585.3627 529388.8681 411534.6968 702698.7741 408441.9968 564120.2789 588644.6803 507338.21 531136.9771 769082.9219 0.706796819 0.688337828 0.535097953 0.913684018 0.53107667 0.733497342 0.765385193 0.659666462 0.690610807 1 19.55277963 -13.99999919 0.457385118 8.350017416 0.687671927 0.441878789 0.103963929 1321.084573 7.459899821 9851.082042 0.052134984 1.00E-14 13.99999919 -7.662345489 TDEQALLSS(ph)ILAK ddPTM_HeLa_A485_30min_R1 4 TDEQALLSSILAK 13 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 TDEQALLS(0.003)S(0.997)ILAK;TDEQALLS(0.003)S(0.997)ILAK;TDEQALLS(0.083)S(0.917)ILAK;TDEQALLS(0.068)S(0.932)ILAK ;;; 241.87 5.34E-35 256862000 1118660 600100 452628 1504220 1032430 471368 1886300 1229380 591050 1855070 TRUE FALSE FALSE 1367502.058 670276.4748 620073.9326 1586391.73 929637.6441 496048.0996 1483276.595 927872.6274 709668.3136 1392635.189 0.981952825 0.481300832 0.445252237 1.13912943 0.667538528 0.356193857 1.065086253 0.666271135 0.509586659 1 20.40938595 -10.12681904 4.610264164 1.000027736 0.698756104 0.106193055 0.25981563 7.46E-05 1.41E-05 0.247491886 0.060019947 7.47E-11 10.12681904 -0.301271632 TDEQALLSS(ph)ILAK ddPTM_HeLa_A486_30min_R1 2 TDEQALLSSILAK 13 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 TDEQALLS(0.004)S(0.996)ILAK;TDEQALLS(0.018)S(0.982)ILAK ; 245.96 3.27E-35 133209000 364960 427670 281170 239780 397370 629880 774380 653240 378370 759100 TRUE FALSE FALSE 339378.1887 393779.8717 390046.554 558219.9578 347528.1493 552171.8098 580621.9334 504511.5121 411167.4162 569016.4191 0.596429518 0.692036044 0.685475042 0.981026099 0.61075241 0.970396971 1.020395746 0.886637881 0.722593237 1 19.11811076 -4.495074468 0.56632206 0.907878612 0.437693747 0.40231356 0.12541382 3.279655269 0.964608793 0.071503027 0.981025302 3.20E-05 4.495074468 -0.470184865 TDEVPAGGS(ph)R ddPTM_HeLa_A486_30min_R1 1 TDEVPAGGSR 10 0 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 TDEVPAGGS(1)R 63.727 0.02279 444150000 698690 726400 432580 172850 697630 505880 529400 504400 556200 747280 TRUE FALSE FALSE 649715.439 668837.4185 600086.5609 402403.5354 610126.7403 443469.669 396938.5206 389559.131 604411.8638 560156.224 1.159882567 1.194019436 1.071284287 0.718377335 1.089208178 0.791689265 0.708621102 0.695447295 1.079005888 1 19.09546972 -5.064812793 4.97143471 0.856104322 1.16915089 0.451728711 0.140216547 0.176804157 8.612956145 0.038322226 0.070187913 8.61E-06 5.064812793 0.313046568 TDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_A485_30min_R1 1 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 2 0 TDEVPAGGS(1)RS(1)EAEDEDDEDYVPYVPLR 204.51 1.75E-28 240760000 126380 101420 115070 172000 185280 119090 186950 182110 135840 211350 TRUE FALSE FALSE 154492.795 113280.1868 157639.1815 181395.9245 166832.8726 125325.3683 147006.6053 137447.237 163101.842 158664.3346 0.973708398 0.713961251 0.993538856 1.143268428 1.051483139 0.789877376 0.926525836 0.866276831 1.027967895 1 17.27561834 -1.002777557 0.007989106 1.798479312 1.19E-05 0.020098447 0.120257318 132668.2716 82.20405953 8217.493022 10407.61495 0.099362485 1.002777557 -1.798467438 TDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_A486_30min_R1 2 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RGI7;A0A499FJW5;Q9UJV9;D6RD33 D6RGI7 DDX41 Probable ATP-dependent RNA helicase DDX41 2 0 TDEVPAGGS(1)RS(1)EAEDEDDEDYVPYVPLR;T(0.019)DEVPAGGS(0.992)RS(0.989)EAEDEDDEDYVPYVPLR ; 163.48 9.24E-14 410301000 193637 216588 189869 116867 239268 223273 279169 302890 193816 253239 TRUE FALSE FALSE 180064.0462 199424.7781 263391.3617 272072.2821 209256.7764 195727.8473 209317.9635 233928.559 210616.1269 189826.3061 0.948572671 1.050564499 1.387538783 1.433269644 1.102359208 1.031089164 1.10268154 1.232329511 1.109520231 1 17.53432041 TDGALLVNAMFFKPHWDEK ddPTM_HeLa_A485_30min_R1 2 TDGALLVNAMFFKPHWDEK 19 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5 P50454 SERPINH1 Serpin H1 0 0 ; ; 189.48 7.68E-18 105344000 264363 196774 141051 375350 299697 239631 389620 304667 182349 526400 FALSE FALSE TRUE 323169.6373 219785.0076 193231.6345 395854.4201 269858.1144 252177.7086 306374.5041 229946.9406 218944.7717 395178.1677 0.817782114 0.556166878 0.488973456 1.001711259 0.682877083 0.638136742 0.775281959 0.581881691 0.554040657 1 18.59214372 -10.61759355 2.843853668 1.026365 0.676928958 0.307812379 0.145114767 67818649.2 66634369.82 13276369.04 0.036311069 2.41E-11 10.61759355 -0.349436042 TDGALLVNAMFFKPHWDEK ddPTM_HeLa_A486_30min_R1 1 TDGALLVNAMFFKPHWDEK 19 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5 P50454 SERPINH1 Serpin H1 0 0 97.284 0.00028801 18878000 6956.6 9261.9 7120.2 6170.5 9452 11075 14335 13545 8474.9 15117 FALSE FALSE TRUE 6468.978264 8527.953313 9877.332126 14365.23584 8266.442024 9708.679102 10748.23138 10461.09919 9209.511156 11331.6048 0.570879269 0.75258125 0.871662249 1.267714158 0.729503205 0.85677883 0.948518022 0.923178964 0.81272788 1 13.46806457 -4.535206444 2.450340866 0.927537453 0.573853221 0.416349383 0.134600748 0.336199923 3.543823094 0.03640401 0.193689157 2.92E-05 4.535206444 -0.353684232 TDGCHAYLSK ddPTM_HeLa_A485_30min_R1 1 TDGCHAYLSK 10 0 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 0 103.34 0.027785 0 43264 39138 34864 58176 63539 41537 70867 57826 45523 87356 FALSE FALSE TRUE 52887.92754 43714.84864 47761.64441 61354.00757 57212.83406 43711.81309 55725.68652 43644.08283 54659.04854 65579.75687 0.806467271 0.666590587 0.728298589 0.935563206 0.872416075 0.666544299 0.849739145 0.665511507 0.8334744 1 16.00096293 -8.019376981 23.35436078 1.000000009 0.774735302 0.36900828 0.089177587 643.0022011 774987.7929 0.087900481 0.022695807 9.56E-09 8.019376981 -0.225264707 TDGEPGPQGWS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TDGEPGPQGWSPR 13 0 Q9H773 Q9H773 DCTPP1 dCTP pyrophosphatase 1 1 0 TDGEPGPQGWS(1)PR 64.104 0.020447 326140000 169190 151170 142030 165010 203930 174070 231530 230220 164420 216720 TRUE FALSE FALSE 206825.7318 168848.0165 194572.8074 174024.0785 183626.0132 183184.036 182061.7241 173758.184 197417.5859 162695.6924 1.271242826 1.037814917 1.195930909 1.069629293 1.128647049 1.125930461 1.119032233 1.067994988 1.213416181 1 17.31181653 TDGFAEAIHS(ph)PQVAGVPR ddPTM_HeLa_A485_30min_R1 6 TDGFAEAIHSPQVAGVPR 18 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR ;;;;; 220.86 1.57E-34 8605610000 3054630 2404680 2543590 3174620 3195360 2272490 2743200 1645110 1818010 3616700 TRUE FALSE FALSE 3734121.905 2685886.408 3484569.789 3348041.452 2877218.739 2391474.062 2157092.91 1241644.193 2182867.931 2715123.25 1.375304751 0.989231854 1.283392858 1.233108461 1.059700969 0.880797607 0.794473293 0.457306751 0.803966424 1 21.37258626 -6.305241519 1.693270452 0.717783126 1.208270217 0.633362091 0.156388874 0.221079656 1.25493167 0.065878424 0.058108534 4.95E-07 6.305241519 0.490487092 TDGFAEAIHS(ph)PQVAGVPR ddPTM_HeLa_A486_30min_R1 6 TDGFAEAIHSPQVAGVPR 18 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR ;;;;; 230.71 3.89E-35 7211570000 2893020 2765650 1817720 880866 2756790 2483630 2910750 2764550 2529940 3136130 TRUE FALSE FALSE 2690234.238 2546489.822 2521589.864 2050700.565 2411007.692 2177224.982 2182449.563 2135122.315 2749237.236 2350822.635 1.144379928 1.083233496 1.072641477 0.872333171 1.0256017 0.926154509 0.928376956 0.908244749 1.169478801 1 21.16473426 -5.064338929 7.372577182 0.969814404 1.105308563 0.345689837 0.079266679 0.278183874 28.20414252 0.020919584 0.036731072 8.62E-06 5.064338929 0.13549416 TDGS(ph)IS(ph)GDRQPVTVADYISR ddPTM_HeLa_A485_30min_R1 5 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 T(0.003)DGS(0.997)IS(1)GDRQPVTVADYISR;TDGS(1)IS(1)GDRQPVTVADYISR;T(0.001)DGS(0.999)IS(1)GDRQPVTVADYISR;T(0.017)DGS(0.983)IS(1)GDRQPVTVADYISR;T(0.009)DGS(0.991)IS(1)GDRQPVTVADYISR ;;;; 211.49 8.83E-27 7823050000 3138230 2849960 2989530 4586030 4559550 3322150 4864900 4405190 3527670 6498670 TRUE FALSE FALSE 3836318.437 3183238.031 4095481.552 4836553.206 4105585.192 3496092.637 3825474.372 3324810.245 4235641.011 4878671.168 0.78634495 0.652480547 0.839466611 0.991366919 0.841537593 0.716607559 0.784122201 0.681499148 0.868195635 1 22.21805682 -8.009211101 24.15750124 1.00000001 0.789236015 0.346858698 0.090406948 311.6745472 817416.2971 0.094714519 0.024455184 9.79E-09 8.009211101 -0.210763995 TDGS(ph)IS(ph)GDRQPVTVADYISR ddPTM_HeLa_A486_30min_R1 4 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 T(0.001)DGS(0.999)IS(1)GDRQPVTVADYISR;T(0.004)DGS(0.996)IS(1)GDRQPVTVADYISR;T(0.004)DGS(0.996)IS(1)GDRQPVTVADYISR;T(0.013)DGS(0.987)IS(0.945)GDRQPVT(0.047)VADYIS(0.008)R ;;; 168.05 2.64E-13 3396100000 2745930 2874240 1943690 1359556 3047390 3106990 3711960 3612550 2618720 4038220 TRUE FALSE FALSE 2553454.487 2646474.755 2696338.822 3165115.076 2665157.93 2723681.163 2783188.347 2790051.226 2845712.758 3027023.428 0.843552932 0.874282878 0.890755849 1.045619617 0.880455006 0.899788597 0.919447244 0.921714448 0.940102654 1 21.52946841 -1.000000016 0.040250337 1.188104087 0.480672418 0.299825792 0.048304327 1139.465602 3.499498488 16.79753034 54.89372142 0.099999996 1.000000016 -0.707431668 TDGS(ph)ISGDRQPVT(ph)VADYISR ddPTM_HeLa_A486_30min_R1 1 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 T(0.006)DGS(0.985)IS(0.244)GDRQPVT(0.725)VADY(0.013)IS(0.028)R 84.436 0.01936 108300000 98284 128800 97373 54389 126740 121730 157160 168850 116790 152680 TRUE FALSE FALSE 91394.79914 118593.4189 135078.4333 126620.3407 110843.0874 106712.1903 117836.9057 130406.541 126913.4512 114447.9342 0.798570981 1.036221577 1.180261 1.10635759 0.968502299 0.932408182 1.029611469 1.139439885 1.108918672 1 16.8043319 -4.2699984 4.979975347 1.059174511 0.787056797 0.523119158 0.073867432 0.139736386 10.73459358 0.020601459 0.129688208 5.37E-05 4.2699984 -0.272117714 TDGS(ph)ISGDRQPVTVADYISR ddPTM_HeLa_A485_30min_R1 6 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 T(0.283)DGS(0.713)IS(0.004)GDRQPVTVADYISR;TDGS(0.999)IS(0.001)GDRQPVTVADYISR;TDGS(1)ISGDRQPVTVADYISR;TDGS(1)ISGDRQPVTVADYISR;TDGS(1)ISGDRQPVTVADYISR;T(0.001)DGS(0.999)ISGDRQPVTVADYISR ;;;;; 317.8 2.98E-102 7881250000 1792233 1636278 1492441 2107355 2560764 1757671 2427835 2115615 1570468 2668851 TRUE FALSE FALSE 2190909.048 1827626.478 2044557.032 2222474.468 2305805.345 1849699.936 1909108.219 1596757.104 1885646.522 2003555.562 1.093510502 0.912191562 1.020464354 1.109265203 1.150856701 0.923208705 0.952860133 0.796961729 0.941150102 1 20.93413109 -6.396040285 7.869511429 0.910395558 1.049882691 0.428199437 0.076887129 0.285010938 16.93287088 0.028452518 0.025043893 4.02E-07 6.396040285 0.139487133 TDGS(ph)ISGDRQPVTVADYISR ddPTM_HeLa_A486_30min_R1 6 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TDGS(0.999)IS(0.001)GDRQPVTVADYISR;TDGS(0.999)IS(0.001)GDRQPVTVADYISR;TDGS(1)ISGDRQPVTVADYISR;TDGS(0.993)IS(0.007)GDRQPVTVADYISR;TDGS(1)ISGDRQPVTVADYISR;TDGS(0.999)IS(0.001)GDRQPVTVADYISR ;;;;; 301.12 2.20E-87 7905290000 2698570 2828580 2173811 1308266 3149410 2933700 3710880 3498960 2481870 3205940 TRUE FALSE FALSE 2509414.178 2604433.019 3015568.836 3045709.364 2754381.631 2571769.922 2782378.574 2702323.19 2697000.49 2403151.757 1.044217941 1.0837572 1.25483912 1.267381203 1.146153847 1.070165425 1.157803941 1.124491278 1.122276395 1 21.19649633 -6.009666559 24.55913174 1.106823638 1.168919849 0.148007047 0.074689384 861.0064298 2187503.328 0.025589439 0.027471438 9.78E-07 6.009666559 0.062096211 TDHGAEIVYKS(ph)PVVS(ph)GDTS(ph)PR ddPTM_HeLa_A486_30min_R1 1 TDHGAEIVYKSPVVSGDTSPR 21 1 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 3 0 TDHGAEIVY(0.032)KS(0.966)PVVS(0.927)GDT(0.277)S(0.798)PR 66.501 0.01873 38481000 43251 67234 61419 18418 65147 62036 63103 62456 60942 56273 TRUE FALSE FALSE 40219.32825 61906.13298 85202.08166 42878.03479 56975.65579 54382.62906 47313.96196 48236.1322 66224.50163 42181.87452 0.953474181 1.46760033 2.019874238 1.016503777 1.350714174 1.289241639 1.121665704 1.143527469 1.569975312 1 15.36433559 -5.372663174 20.2803652 1.224179642 1.485747068 0.153810515 0.286225701 11.12475735 2004.612153 0.080575879 0.11951328 4.24E-06 5.372663174 0.261567426 TDIQIALPSGCYGR ddPTM_HeLa_A485_30min_R1 1 TDIQIALPSGCYGR 14 0 H0YNW5;A0A0C4DGL3;H0YMM5;H0YKC5;H0YMP1;P33316-2;H0YNJ9;P33316;H0YKI0 H0YNW5;P33316-2;P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 105.65 0.0037405 36485000 17302 12715 21059 24434 32953 16075 22539 20516 15055 30357 FALSE FALSE TRUE 21150.77021 14201.90864 28849.60044 25768.76755 29672.08361 16916.66214 17723.35852 15484.41883 18076.40041 22789.55858 0.928090386 0.623176118 1.265913086 1.130726927 1.302003438 0.742298807 0.777696438 0.679452337 0.793187825 1 14.47608536 -6.304503064 24.96657654 0.777190853 1.042752713 0.293381985 0.193549306 626.0652168 362965.3647 0.072441359 0.063887711 4.96E-07 6.304503064 0.26556186 TDLEKDIISDTSGDFRK ddPTM_HeLa_A485_30min_R1 2 TDLEKDIISDTSGDFRK 17 2 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 170.61 3.09E-12 630370000 161964 142663 72656 276294 222701 246825 449570 510420 182972 545260 FALSE FALSE TRUE 197992.333 159346.1968 99534.47787 291387.2416 200528.1065 259748.3753 353515.6969 385238.6947 219692.8021 409336.7168 0.483690627 0.389279022 0.243160395 0.711852198 0.489885462 0.63455919 0.863630557 0.941129097 0.536704364 1 18.64292855 -6.150351514 0.833996024 0.847492337 0.385277275 0.564348367 0.155121192 0.459642517 0.701169014 0.096036559 0.101976915 7.07E-07 6.150351514 -0.462215062 TDLEKDIISDTSGDFRK ddPTM_HeLa_A486_30min_R1 2 TDLEKDIISDTSGDFRK 17 2 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 227.04 1.66E-34 430780000 404820 426250 218780 313000 587780 625250 873500 907440 414180 937590 FALSE FALSE TRUE 376444.2085 392472.3976 303497.4751 728679.8181 514055.1516 548113.0121 654941.0611 700835.7213 450081.4559 702811.3613 0.535626242 0.558432062 0.431833479 1.036807112 0.731426923 0.779886385 0.931887413 0.997188947 0.640401508 1 19.42277799 -5.252516422 24.99638919 0.86638269 0.513610724 0.644617978 0.124194437 409.2384464 1146420.511 0.032947573 0.056012574 5.59E-06 5.252516422 -0.352771966 TDLQGSAS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 TDLQGSASPSK 11 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGS(0.001)AS(0.994)PS(0.004)K;TDLQGS(0.001)AS(0.995)PS(0.005)K ; 111.59 0.00050251 280710000 689410 707240 735750 911450 672230 598260 787210 644460 581170 978020 TRUE FALSE FALSE 842766.8761 789945.5658 1007934.542 961240.2056 605300.4209 629583.9685 619016.1526 486405.1745 697805.4882 734217.6131 1.147843447 1.075901138 1.372800821 1.309203414 0.824415555 0.857489602 0.843096299 0.66248094 0.950406904 1 19.4858482 -5.767662856 25 0.838836678 1.226139189 0.71989993 0.112786517 77.10491865 309733.6677 0.035528744 0.041287273 1.71E-06 5.767662856 0.38730251 TDLQGSAS(ph)PSK ddPTM_HeLa_A486_30min_R1 2 TDLQGSASPSK 11 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGS(0.149)AS(0.824)PS(0.027)K;TDLQGS(0.008)AS(0.976)PS(0.016)K ; 79.885 0.0072438 273970000 549340 640740 606940 213297 618090 533390 603100 585870 564170 913860 TRUE FALSE FALSE 510834.1028 589965.4289 841963.4224 496566.1954 540563.3887 467585.7649 452198.0011 452480.1905 613072.7098 685023.5078 0.745717624 0.861233844 1.229101502 0.724889277 0.789116552 0.682583531 0.660120413 0.660532354 0.894965943 1 19.38579397 TDLQGSAS(ph)PSKVEGVHT(ph)PR ddPTM_HeLa_A485_30min_R1 2 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 2 0 TDLQGSAS(1)PSKVEGVHT(1)PR;TDLQGSAS(0.997)PS(0.003)KVEGVHT(1)PR ; 273.79 5.42E-68 1227680000 789790 775190 551980 1268080 1126850 842760 1421160 1205960 685960 1717330 TRUE FALSE FALSE 965476.0608 865841.7272 756180.3718 1337351.999 1014656.857 886885.6104 1117517.556 910196.4191 823625.88 1289231.236 0.748877342 0.671595369 0.586535876 1.037325161 0.787024724 0.687918184 0.866809246 0.705999353 0.638850392 1 20.29807962 -11.35990515 2.354497509 2.752253218 0.751059264 0.277599026 0.121915948 2994941.436 881893.7943 27692061.32 0.032851193 4.37E-12 11.35990515 -2.001193954 TDLQGSAS(ph)PSKVEGVHT(ph)PR ddPTM_HeLa_A486_30min_R1 1 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 2 0 TDLQGSAS(0.981)PS(0.019)KVEGVHT(1)PR 237.12 4.08E-44 735180000 438380 393670 241590 237480 393610 475800 614940 548180 336030 652870 TRUE FALSE FALSE 407651.8258 362474.1555 335140.118 552865.4416 344239.7635 417100.6336 461075.5078 423371.3807 365157.351 489387.1025 0.832984408 0.740669612 0.684816 1.129709873 0.703409963 0.852291839 0.942148874 0.865105309 0.746152379 1 18.90061656 -14 0.118764769 1.467318566 0.762766924 0.12555895 0.125898331 348.1274725 2.684845738 40.38454478 1.256852965 1.00E-14 14 -0.704551642 TDLQGSAS(ph)PSKVEGVHTPR ddPTM_HeLa_A485_30min_R1 4 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGSAS(0.989)PS(0.011)KVEGVHTPR;TDLQGSAS(0.999)PS(0.001)KVEGVHTPR;TDLQGSAS(1)PSKVEGVHTPR;TDLQGSAS(0.991)PS(0.009)KVEGVHTPR ;;; 264.97 1.31E-58 3432970000 1696180 1551890 1218060 2615530 2496230 1692630 3181370 2950850 1551020 3671880 TRUE FALSE FALSE 2073489.389 1733370.036 1668671.082 2758409.781 2247696.576 1781253.489 2501644.31 2227149.411 1862295.487 2756547.892 0.752205102 0.628819126 0.605348119 1.000675442 0.815402694 0.64618993 0.907527969 0.807948745 0.675589745 1 21.39443124 -14 0.11842725 1.697031125 0.653950299 0.252172182 0.121738043 237.8755262 1.830937055 40.72188865 1.279330387 1.00E-14 14 -1.043080826 TDLQGSAS(ph)PSKVEGVHTPR ddPTM_HeLa_A486_30min_R1 4 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGSAS(1)PSKVEGVHTPR;TDLQGSAS(1)PSKVEGVHTPR;TDLQGSAS(0.999)PSKVEGVHTPR;TDLQGSAS(0.919)PS(0.081)KVEGVHTPR ;;; 269.45 3.28E-59 3436530000 1341660 1186930 653010 450359 1255890 1456810 1991630 1817520 1040600 1905810 TRUE FALSE FALSE 1247616.562 1092873.344 905872.9602 1048458.512 1098364.565 1277083.594 1493303.109 1403710.372 1130800.046 1428582.771 0.87332466 0.765005267 0.634106037 0.733915131 0.768849091 0.893951418 1.045303876 0.982589459 0.791553747 1 20.4461532 -6.32514511 3.20702552 0.954783166 0.745387342 0.571549907 0.082276462 0.1920996 3.91616009 0.031821937 0.028346214 4.73E-07 6.32514511 -0.209395824 TDLQGSASPSKVEGVHT(ph)PR ddPTM_HeLa_A485_30min_R1 4 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGSASPSKVEGVHT(1)PR;TDLQGSASPS(0.001)KVEGVHT(0.999)PR;TDLQGSASPSKVEGVHT(1)PR;TDLQGSASPS(0.025)KVEGVHT(0.975)PR ;;; 185.96 3.70E-18 1343080000 603850 782700 622470 680390 1216570 915230 1443790 1557320 677740 1206070 TRUE FALSE FALSE 738174.3492 874229.9564 852747.5561 717557.9829 1095444.019 963150.0276 1135312.472 1175384.828 813756.2014 905418.9451 0.81528485 0.965552975 0.9418265 0.792514876 1.209875302 1.063761735 1.253908456 1.298166815 0.898762066 1 19.78822597 -5.765145948 24.99990742 1.13946302 0.889494069 0.479391933 0.122391099 80.00301456 539601.0151 0.036736812 0.043284054 1.72E-06 5.765145948 -0.249968952 TDLQGSASPSKVEGVHT(ph)PR ddPTM_HeLa_A486_30min_R1 3 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGSASPSKVEGVHT(0.999)PR;TDLQGSASPS(0.002)KVEGVHT(0.998)PR;TDLQGSASPSKVEGVHT(1)PR ;; 194.19 9.26E-19 1407960000 817120 713140 537040 210418 1054080 699240 1126700 1021890 615920 953500 TRUE FALSE FALSE 759844.1076 656628.1892 744996.2704 489863.7379 921867.4575 612974.8782 844787.743 789227.9547 669308.4415 714737.3938 1.063109492 0.918698525 1.042335656 0.685375835 1.289798835 0.857622511 1.181955429 1.104220881 0.936439659 1 19.44705374 -5.767621625 24.99999935 1.062695476 0.934970915 0.163670578 0.148310054 282.8719057 1143885.989 0.04327404 0.050296713 1.71E-06 5.767621625 -0.127724561 TDNS(ph)SLSSPLNPK ddPTM_HeLa_A486_30min_R1 1 TDNSSLSSPLNPK 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 T(0.08)DNS(0.373)S(0.266)LS(0.141)S(0.141)PLNPK 61.375 0.027017 211550000 287800 302560 246790 129510 341560 298940 396280 387420 259470 362610 TRUE FALSE FALSE 267626.7062 278584.0437 342353.6973 301505.8251 298718.3599 262059.8222 297126.5526 299212.9233 281961.0685 271810.0958 0.984609146 1.02492162 1.259532676 1.109251752 1.098996559 0.964128361 1.093140237 1.100816077 1.037345827 1 18.05223952 -6.051246105 24.98577233 1.046854028 1.101728228 0.112592361 0.076654119 891.1932482 434511.4677 0.026761312 0.026761716 8.89E-07 6.051246105 0.054874201 TDNSSLSS(ph)PLNPK ddPTM_HeLa_A485_30min_R1 1 TDNSSLSSPLNPK 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 TDNSSLS(0.097)S(0.903)PLNPK 148.66 7.11E-08 139470000 373080 296040 236300 499890 491530 281920 477950 479140 288520 816290 TRUE FALSE FALSE 456070.3589 330659.3028 323717.2033 527197.7249 442591.5473 296680.8953 375832.078 361630.1637 346423.3175 612803.9257 0.744235374 0.539584178 0.52825576 0.860304092 0.722240065 0.484136741 0.61329907 0.590123771 0.565308581 1 19.22506601 -10.20416021 4.550044264 1.000089513 0.625894311 0.509043919 0.109736864 155812700.9 23.77245129 146124.3189 0.027592512 6.25E-11 10.20416021 -0.374195202 TDNSSLSS(ph)PLNPK ddPTM_HeLa_A486_30min_R1 1 TDNSSLSSPLNPK 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 TDNSS(0.005)LS(0.403)S(0.592)PLNPK 162.88 8.50E-12 190750000 480510 490710 260830 244920 447710 572960 706690 608860 445020 694020 TRUE FALSE FALSE 446828.7304 451824.3525 361830.3613 570186.1376 391554.0371 502274.0206 529868.6874 470235.8693 483594.6919 520232.8747 0.858901373 0.868504038 0.695516141 1.096020965 0.752651468 0.965479202 1.018522114 0.903894952 0.929573496 1 18.98879804 -5.683238333 0.852868305 0.956908629 0.826823342 0.183104377 0.104258258 1.183277725 1.832279844 0.051728051 0.094886897 2.07E-06 5.683238333 -0.130085287 TDQVIQSLIALVNDPQPEHPLR ddPTM_HeLa_A486_30min_R1 1 TDQVIQSLIALVNDPQPEHPLR 22 0 A0A1B0GUS4;P68036-2;P68036;P68036-3 A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 0 0 98.002 4.11E-05 6787600 5006.1 13893 16803 8513.2 21433 19888 26158 22859 18765 22606 FALSE FALSE TRUE 4655.198242 12792.06808 23309.5716 19819.15983 18744.67329 17434.42077 19612.99173 17654.50471 20391.56531 16945.31046 0.27471897 0.75490314 1.375576544 1.169595557 1.106186477 1.028864051 1.157428881 1.041851948 1.203375138 1 14.04859845 -4.459938673 3.360286533 1.133379547 0.294127447 0.862345723 0.107189206 0.085241602 1.747288807 0.027732325 0.137868561 3.47E-05 4.459938673 -0.8392521 down TDRVGVEASEETPQTSSSSARPGT(ph)PSDHQSQEASQFER ddPTM_HeLa_A486_30min_R1 1 TDRVGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 38 2 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;Q6Y7W6;I1E4Y6 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 TDRVGVEASEETPQTSS(0.011)S(0.042)S(0.139)ARPGT(0.757)PS(0.042)DHQS(0.009)QEASQFER 101.79 5.43E-05 837830000 69273 61402 66740 1910.3 91522 47726 70263 60593 51447 24533 TRUE FALSE FALSE 64417.32043 56536.2819 92583.51536 4447.274941 80042.45735 41838.05136 52682.45423 46797.29664 55906.46738 18389.77712 3.502887502 3.074332089 5.034509922 0.241834086 4.352551792 2.275071149 2.864768501 2.544745178 3.040084011 1 14.16661637 -9.586510417 0.196655662 6.70E-20 3.610877684 0.213910696 1.194764544 24.8153508 1.317955072 21.52371488 3.877162504 2.59E-10 9.586510417 3.610877684 TDS(ph)IGEK ddPTM_HeLa_A485_30min_R1 4 TDSIGEK 7 0 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;Q7Z3U7-3 A0A286YFF8 MON2 Protein MON2 homolog 1 0 TDS(1)IGEK;TDS(1)IGEK;TDS(1)IGEK;TDS(1)IGEK ;;; 128.86 0.001701 5114915000 6317160 4244230 2226860 11777730 4869850 4296460 8815520 8351080 3562670 14086340 TRUE FALSE FALSE 7722390.448 4740555.779 3050668.181 12421117.57 4384990.635 4521416.002 6932012.136 6302964.536 4277665.19 10574874.68 0.730258342 0.448284819 0.288482679 1.174587685 0.414661239 0.427562136 0.65551719 0.596032079 0.40451214 1 23.33413723 -10.2574688 3.947469621 1.000498938 0.571318316 0.226601153 0.237710097 29505172.15 21905909.1 115909.0836 0.056440653 5.53E-11 10.2574688 -0.429180622 TDS(ph)IGEK ddPTM_HeLa_A486_30min_R1 2 TDSIGEK 7 0 A0A286YFF8;Q7Z3U7-2;Q7Z3U7-6;Q7Z3U7-5;Q7Z3U7;Q7Z3U7-3 A0A286YFF8 MON2 Protein MON2 homolog 1 0 TDS(1)IGEK;TDS(1)IGEK ; 126.55 0.0017376 3310400000 6086400 3877300 2048040 3676800 2954900 7210400 7817300 6347600 4275300 10089400 TRUE FALSE FALSE 5659774.79 3570048.627 2841095.936 8559776.215 2584268.889 6320854.158 5861328.857 4902390.047 4645886.446 7562948.569 0.748355584 0.472044546 0.375659825 1.131804102 0.341701238 0.835765852 0.77500578 0.648211475 0.614295655 1 22.85051738 -14 0.183430595 2.379297616 0.593476055 0.171642864 0.222583068 240.3439901 2.326939169 121.4335137 0.646169105 1.00E-14 14 -1.785821561 TDS(ph)PDMHEDT ddPTM_HeLa_A485_30min_R1 6 TDSPDMHEDT 10 0 Q9BW61 Q9BW61 DDA1 DET1- and DDB1-associated protein 1 1 0 T(0.012)DS(0.988)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT ;;;;; 208.75 1.30E-21 11100150000 7044570 7967670 6883420 10419290 10757540 7867060 12133120 11694410 7205200 13344420 TRUE FALSE FALSE 8611610.293 8899419.697 9429883.501 10988469.43 9686481.546 8278967.097 9540779.794 8826337.611 8651217.55 10017901.68 0.859622161 0.888351671 0.941303259 1.096883338 0.96691721 0.826417284 0.952373072 0.881056522 0.863575809 1 23.25607702 TDS(ph)PDMHEDT ddPTM_HeLa_A486_30min_R1 6 TDSPDMHEDT 10 0 Q9BW61 Q9BW61 DDA1 DET1- and DDB1-associated protein 1 1 0 TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT;TDS(1)PDMHEDT ;;;;; 216.43 7.73E-17 10617380000 6928740 7178960 4906600 3208360 7351370 7476270 9369670 9127570 5971900 9604530 TRUE FALSE FALSE 6443071.106 6610073.064 6806566.923 7469224.222 6429292.626 6553923.821 7025279.464 7049421.564 6489549.1 7199493.173 0.894933984 0.918130333 0.945423068 1.037465283 0.893020171 0.910331278 0.975801948 0.979155254 0.901389715 1 22.77946392 -14 0.007233302 2.019870999 7.94E-14 0.137834221 0.044260175 58074.08771 31.85132263 4959.404163 3984.506069 1.00E-14 14 -2.019870999 TDS(ph)PWIKPAR ddPTM_HeLa_A485_30min_R1 4 TDSPWIKPAR 10 1 A0A0D9SER9;A0A1W2PPZ7;A0A0D9SEQ1;A0A1B0GVZ8;A0A1B0GUD1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GV09;Q9H9B1-4;Q9H9B1-3;Q9H9B1 A0A0D9SER9 EHMT1 Histone-lysine N-methyltransferase EHMT1 1 0 T(0.002)DS(0.998)PWIKPAR;TDS(1)PWIKPAR;T(0.001)DS(0.999)PWIKPAR;T(0.002)DS(0.998)PWIKPAR ;;; 194.7 1.05E-10 1177320000 1266450 1064280 812850 2192540 1732350 1238660 2030290 1785000 1063750 2908720 TRUE FALSE FALSE 1548167.433 1188738.288 1113557.041 2312312.908 1559871.151 1303514.322 1596501.956 1347225.951 1277234.868 2183629.635 0.708988103 0.544386406 0.509956919 1.058930906 0.714347857 0.596948448 0.731123049 0.616966325 0.58491369 1 21.05829675 -10.40211193 3.449301971 1.002788826 0.675657206 0.307622215 0.146678488 266729932.4 334469828.8 7245383.008 0.037926031 3.96E-11 10.40211193 -0.32713162 TDS(ph)PWIKPAR ddPTM_HeLa_A486_30min_R1 4 TDSPWIKPAR 10 1 A0A0D9SER9;A0A1W2PPZ7;A0A0D9SEQ1;A0A1B0GVZ8;A0A1B0GUD1;A0A0C4DGF8;A0A1B0GU48;A0A1B0GV09;Q9H9B1-4;Q9H9B1-3;Q9H9B1 A0A0D9SER9 EHMT1 Histone-lysine N-methyltransferase EHMT1 1 0 T(0.001)DS(0.999)PWIKPAR;T(0.001)DS(0.999)PWIKPAR;TDS(1)PWIKPAR;T(0.003)DS(0.997)PWIKPAR ;;; 190.78 2.89E-10 1513760000 1965400 2032140 989540 1130250 1900720 2511830 3099450 2836170 1693220 3322320 TRUE FALSE FALSE 1827635.609 1871105.825 1372716.389 2631279.12 1662313.974 2201945.953 2323934.827 2190436.004 1839989.673 2490389.447 0.733875423 0.751330611 0.551205511 1.056573349 0.667491575 0.884177354 0.933161209 0.879555608 0.738836119 1 21.24793994 -5.250966996 24.92507748 0.868490478 0.68605654 0.376133041 0.117967682 783.5156392 1864823.74 0.030873741 0.052736168 5.61E-06 5.250966996 -0.182433938 TDS(ph)REDEIS(ph)PPPPNPVVK ddPTM_HeLa_A485_30min_R1 2 TDSREDEISPPPPNPVVK 18 1 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 2 0 T(0.042)DS(0.962)REDEIS(0.995)PPPPNPVVK;T(0.036)DS(0.969)REDEIS(0.994)PPPPNPVVK ; 94.72 0.00062302 282930000 255230 225972 188922 349140 340670 258260 359390 336060 242648 479440 TRUE FALSE FALSE 312005.033 252397.4597 258812.1095 368212.6341 306751.6986 271782.0943 282603.3906 253640.7581 291345.2279 359924.4314 0.866862613 0.701251256 0.719073469 1.023027619 0.852266953 0.755108769 0.785174236 0.704705588 0.809462216 1 18.45733451 -11.42005823 2.072712161 2.486886677 0.799747228 0.294178512 0.092010271 6415542.418 571201.6247 44716733.83 0.024210372 3.80E-12 11.42005823 -1.68713945 TDS(ph)REDEIS(ph)PPPPNPVVK ddPTM_HeLa_A486_30min_R1 2 TDSREDEISPPPPNPVVK 18 1 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 2 0 T(0.136)DS(0.865)REDEIS(1)PPPPNPVVK;T(0.05)DS(0.951)REDEIS(0.999)PPPPNPVVK ; 97.352 0.00049904 249380000 281950 275250 130526 147170 245480 320760 417840 416090 234170 519160 TRUE FALSE FALSE 262186.761 253438.1876 181069.1628 342619.1976 214689.6094 281187.8924 313292.0125 321355.3902 254468.0441 389158.9568 0.673726652 0.651245932 0.465283298 0.880409384 0.551675879 0.722552796 0.805048958 0.825768968 0.653892297 1 18.57000004 -14 0.106579202 2.016194254 0.501887188 0.437260514 0.113003683 157.6027342 1.123967545 34.86084533 1.525940381 1.00E-14 14 -1.514307065 TDS(ph)TSDGRPAWMR ddPTM_HeLa_A485_30min_R1 16 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 T(0.001)DS(0.958)T(0.039)S(0.002)DGRPAWMR;T(0.013)DS(0.938)T(0.046)S(0.002)DGRPAWMR;T(0.001)DS(0.993)T(0.006)S(0.001)DGRPAWMR;T(0.002)DS(0.946)T(0.051)S(0.001)DGRPAWMR;TDS(0.984)T(0.016)SDGRPAWMR;T(0.01)DS(0.986)T(0.004)SDGRPAWMR;T(0.001)DS(0.972)T(0.027)SDGRPAWMR;T(0.004)DS(0.974)T(0.021)SDGRPAWMR;T(0.009)DS(0.74)T(0.136)S(0.116)DGRPAWMR;TDS(0.46)T(0.46)S(0.079)DGRPAWMR;T(0.006)DS(0.836)T(0.131)S(0.027)DGRPAWMR;T(0.007)DS(0.552)T(0.417)S(0.024)DGRPAWMR;T(0.008)DS(0.862)T(0.061)S(0.069)DGRPAWMR;T(0.022)DS(0.694)T(0.129)S(0.156)DGRPAWMR;T(0.025)DS(0.819)T(0.126)S(0.029)DGRPAWMR;T(0.079)DS(0.737)T(0.143)S(0.041)DGRPAWMR ;;;;;;;;;;;;;;; 221.78 1.04E-27 37006550000 5657600 5587820 4799370 7312530 7564500 5312419 8063920 8153600 5034184 9722300 TRUE FALSE FALSE 6916113.602 6241266.941 6574856.681 7711994.998 6811351.819 5590569.044 6340997.616 6153916.816 6044498.553 7298709.536 0.947580332 0.855119239 0.900824543 1.056624457 0.933226865 0.76596678 0.86878339 0.843151352 0.828159899 1 22.79920998 -6.047112105 24.19430188 0.851628421 0.939140062 0.216753425 0.072574352 405.7778541 208385.0612 0.023898649 0.023899543 8.97E-07 6.047112105 0.087511641 TDS(ph)TSDGRPAWMR ddPTM_HeLa_A486_30min_R1 16 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 T(0.002)DS(0.944)T(0.051)S(0.003)DGRPAWMR;T(0.006)DS(0.963)T(0.029)S(0.002)DGRPAWMR;T(0.004)DS(0.961)T(0.033)S(0.001)DGRPAWMR;TDS(0.968)T(0.028)S(0.004)DGRPAWMR;T(0.001)DS(0.969)T(0.03)SDGRPAWMR;T(0.001)DS(0.988)T(0.011)SDGRPAWMR;T(0.001)DS(0.97)T(0.027)S(0.001)DGRPAWMR;TDS(0.966)T(0.032)S(0.002)DGRPAWMR;T(0.003)DS(0.976)T(0.021)SDGRPAWMR;T(0.001)DS(0.738)T(0.13)S(0.13)DGRPAWMR;TDS(0.616)T(0.173)S(0.211)DGRPAWMR;T(0.005)DS(0.499)T(0.38)S(0.116)DGRPAWMR;T(0.001)DS(0.905)T(0.065)S(0.029)DGRPAWMR;T(0.001)DS(0.87)T(0.126)S(0.004)DGRPAWMR;T(0.023)DS(0.741)T(0.107)S(0.129)DGRPAWMR;T(0.012)DS(0.766)T(0.165)S(0.056)DGRPAWMR ;;;;;;;;;;;;;;; 183.23 1.86E-17 39653060000 7536670 7995790 5306723 3340897 7761740 7858980 9758850 9382260 6177960 9790430 TRUE FALSE FALSE 7008388.352 7362174.48 7361628.265 7777777.056 6788190.194 6889418.952 7317082.511 7246124.211 6713470.547 7338842.603 0.954971885 1.003179231 1.003104803 1.059809765 0.924967404 0.938760963 0.997034942 0.987366074 0.914786011 1 22.80712113 -5.777552573 24.99998154 0.960595419 1.004962958 0.270838266 0.035994102 342.8886042 531997.1469 0.011360334 0.012921783 1.67E-06 5.777552573 0.044367539 TDS(ph)VKTPESEGNPLLEQLEK ddPTM_HeLa_A486_30min_R1 1 TDSVKTPESEGNPLLEQLEK 20 1 Q8WYK2;Q8WYK2-2 Q8WYK2 JDP2 Jun dimerization protein 2 1 0 T(0.025)DS(0.843)VKT(0.132)PESEGNPLLEQLEK 87.509 0.00034577 62182000 48523 46860 19071 40149 31853 69931 94641 79672 33705 100240 TRUE FALSE FALSE 45121.78827 43146.64294 26455.80194 93468.90102 27857.69972 61303.62423 70960.82079 61532.42483 36626.57654 75139.25155 0.600508886 0.574222421 0.352090304 1.243942402 0.370747634 0.815866847 0.944390839 0.818911868 0.487449313 1 16.19727913 -5.161578032 21.51809132 0.79205982 0.51547233 0.246432424 0.240754579 20.3892359 4385.748612 0.062792306 0.108759836 6.89E-06 5.161578032 -0.276587489 TDS(ph)YSAGQSVEILDGVELGEPAHK ddPTM_HeLa_A486_30min_R1 1 TDSYSAGQSVEILDGVELGEPAHK 24 0 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.054)DS(0.895)Y(0.01)S(0.016)AGQS(0.024)VEILDGVELGEPAHK 83.834 2.40E-05 0 58170 61298 35573 26907 64733 70449 81662 76359 46987 78550 TRUE FALSE FALSE 54092.58339 56440.52324 49347.81828 62640.8558 56613.58353 61757.71865 61229.30387 58973.72261 51059.87099 58880.56873 0.9186831 0.95855941 0.838100231 1.063862954 0.961498585 1.048864167 1.039889818 1.001582082 0.867176933 1 15.84550399 -5.264752531 24.99975044 1.000019093 0.910458765 0.338595267 0.058993172 342.7382979 2586177.094 0.016433224 0.025571911 5.44E-06 5.264752531 -0.089560328 TDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_A485_30min_R1 4 TDSYSAGQSVEILDGVELGEPAHKK 25 1 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.114)DS(0.537)YS(0.349)AGQSVEILDGVELGEPAHKK;T(0.032)DS(0.935)Y(0.027)S(0.006)AGQSVEILDGVELGEPAHKK;T(0.085)DS(0.58)Y(0.148)S(0.187)AGQSVEILDGVELGEPAHKK;T(0.127)DS(0.869)Y(0.001)S(0.003)AGQSVEILDGVELGEPAHKK ;;; 210.68 6.32E-29 1596010000 478708 329779 216067 768170 474412 387953 718300 617393 339891 1054070 TRUE FALSE FALSE 585194.9431 368343.7854 295999.1746 810133.182 427177.8755 408265.6192 564829.337 465976.3987 408104.006 791309.7477 0.739527024 0.465486223 0.374062338 1.023787694 0.539836488 0.515936547 0.713790445 0.588867255 0.515732312 1 19.593883 -9.966943698 4.10825588 1.000021556 0.607436647 0.316042664 0.172747573 203408860 429084752.2 65898.48289 0.042749856 1.08E-10 9.966943698 -0.392584909 TDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_A486_30min_R1 3 TDSYSAGQSVEILDGVELGEPAHKK 25 1 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.13)DS(0.817)Y(0.024)S(0.03)AGQSVEILDGVELGEPAHKK;T(0.165)DS(0.833)YS(0.002)AGQSVEILDGVELGEPAHKK;T(0.186)DS(0.755)Y(0.012)S(0.047)AGQSVEILDGVELGEPAHKK ;; 284.61 1.02E-75 1738390000 1300915 1235865 493848 910646 1020517 1785488 2229127 1788256 1045863 2271983 TRUE FALSE FALSE 1209727.576 1137930.556 685079.1713 2120029.91 892514.2419 1565212.644 1671375.847 1381109.146 1136519.247 1703063.669 0.71032434 0.668166773 0.402262807 1.244833031 0.524063932 0.919057034 0.981393637 0.810955675 0.667338085 1 20.69970094 -5.230762109 24.99987753 0.861599923 0.601042912 0.29906403 0.198461295 920.7243462 750326.4217 0.051766352 0.089649456 5.88E-06 5.230762109 -0.260557011 TDSDLTQTQLK ddPTM_HeLa_A486_30min_R1 1 TDSDLTQTQLK 11 0 Q5VTE6-2;Q5VTE6 Q5VTE6-2 ANGEL2 Protein angel homolog 2 0 0 94.302 0.0085141 0 35363 55936 35498 14368 48356 51280 57951 47608 42691 45359 FALSE FALSE TRUE 32884.23631 51503.42764 49243.77627 33449.43012 42290.73958 44953.59498 43451.04686 36768.69768 46391.49025 34000.81116 0.967160347 1.514770556 1.448311807 0.983783297 1.243815607 1.322133015 1.277941478 1.081406485 1.364423044 1 15.05328154 -12.66006776 0.357022337 2.91E-13 1.257749897 0.142039997 0.176126708 321.7681868 6.547180873 240.535575 0.131783173 2.19E-13 12.66006776 1.257749897 TDSEEQDKS(ph)RDEDNDEDEERLEEEEQNEEEEVDN ddPTM_HeLa_A485_30min_R1 1 TDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN 34 3 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 1 0 TDSEEQDKS(1)RDEDNDEDEERLEEEEQNEEEEVDN 238.74 5.37E-50 754060000 40156 21219 26265 103250 71588 40302 78803 66813 39806 135750 TRUE FALSE FALSE 49088.56366 23700.37747 35981.51648 108890.2861 64460.44736 42412.1504 61966.09529 50427.00699 47794.69908 101910.0233 0.481685335 0.23256179 0.353071418 1.068494369 0.632523134 0.416172512 0.608047111 0.494818913 0.468989188 1 16.63693643 -11.45536198 2.079966148 5.147733578 0.531611181 0.309282961 0.211345717 6976515.477 500781.3022 136454831.4 0.057127297 3.50E-12 11.45536198 -4.616122397 TDSEKPFRGS(ph)QS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TDSEKPFRGSQSPK 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 T(0.001)DS(0.001)EKPFRGS(0.998)QS(1)PK;TDS(0.002)EKPFRGS(0.998)QS(1)PK ; 58.073 0.022177 2534300000 1764650 1211720 639640 3733600 1669570 1511890 3322200 2751600 1108510 4796700 TRUE FALSE FALSE 2157190.305 1353420.113 876269.4536 3937557.114 1503341.749 1591050.223 2612384.83 2076765.786 1330977.789 3600970.967 0.599057955 0.37584866 0.243342549 1.093470942 0.41748233 0.441839225 0.725466785 0.576723835 0.369616362 1 21.77995454 -10.74411245 2.815022215 1.08723894 0.541256478 0.271787523 0.22677077 115295299.6 97514103.35 70277324.72 0.055556048 1.80E-11 10.74411245 -0.545982462 TDSEKPFRGS(ph)QS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TDSEKPFRGSQSPK 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 TDS(0.003)EKPFRGS(0.997)QS(1)PK;TDSEKPFRGS(1)QS(1)PK ; 74.364 0.0052098 2037600000 2100710 1654990 525990 1844330 1138890 2382130 3380600 2958350 1255750 5216100 TRUE FALSE FALSE 1953461.077 1523842.565 729667.4145 4293693.447 996039.7965 2088247.02 2534738.124 2284798.285 1364599.421 3909954.609 0.499612214 0.389734081 0.186617873 1.098144065 0.254744593 0.534084722 0.648278146 0.584354171 0.349006461 1 21.89872043 -11.22161277 2.276941844 2.56720516 0.509696664 0.274868217 0.24110957 15054527.74 2580615.384 121648026.6 0.058454624 6.00E-12 11.22161277 -2.057508495 TDSEKPFRGS(ph)QS(ph)PKR ddPTM_HeLa_A485_30min_R1 2 TDSEKPFRGSQSPKR 15 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 T(0.053)DS(0.06)EKPFRGS(0.918)QS(0.97)PKR;T(0.021)DS(0.023)EKPFRGS(0.969)QS(0.987)PKR ; 78.088 0.0054241 914800000 1240510 836790 469380 2363130 1363040 1202220 2440340 2113260 888630 3341700 TRUE FALSE FALSE 1516457.17 934645.3114 643023.1945 2492221.808 1227330.952 1265166.38 1918941.423 1594979.672 1066969.89 2508675.689 0.604485138 0.37256522 0.256319777 0.993441208 0.489234602 0.504316435 0.764922079 0.635785518 0.425312006 1 21.25849455 -14 0.193628977 2.851815174 0.490142397 0.297082694 0.199261765 181.2707874 1.781012387 130.2728079 0.527720554 1.00E-14 14 -2.361672777 TDSEKPFRGS(ph)QSPKR ddPTM_HeLa_A485_30min_R1 1 TDSEKPFRGSQSPKR 15 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 TDSEKPFRGS(0.939)QS(0.061)PKR 78.088 0.032477 1291700000 60589 238790 62840 34692 140890 368380 585000 1785100 86629 73769 TRUE FALSE FALSE 74066.81402 266714.4133 86087.13099 36587.13612 126862.4969 387667.8072 460009.971 1347301.426 104014.6457 55379.74592 1.337435064 4.816100343 1.554487648 0.660659155 2.290774268 7.000173091 8.306465899 24.32841473 1.878207348 1 15.75707081 -6.458680779 2.586441607 10 2.147053969 0.214267054 6.042921687 0.402667521 5.323772432 2.401634262 1.964455766 3.48E-07 6.458680779 -7.852946031 TDSEKPFRGSQS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TDSEKPFRGSQSPK 14 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 TDSEKPFRGS(0.018)QS(0.982)PK;TDS(0.015)EKPFRGS(0.029)QS(0.955)PK ; 122.14 3.41E-05 1104040000 254021 897310 177549 127388 474530 1307030 2363440 6020200 315013 416469 TRUE FALSE FALSE 310527.0951 1002242.599 243231.7635 134346.8839 427284.127 1375464.07 1858471.736 4543736.511 378233.2196 312650.9428 0.993206968 3.205627943 0.777965872 0.429702475 1.366649092 4.399360057 5.944238388 14.53293718 1.209761967 1 18.25419334 -6.494438098 2.631497157 6.768597288 1.373723609 0.225592188 3.602992302 0.339642164 4.706313745 1.427708252 1.142828821 3.20E-07 6.494438098 -5.394873679 TDSLAAT(ph)PPAAK ddPTM_HeLa_A485_30min_R1 2 TDSLAATPPAAK 12 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TDSLAAT(1)PPAAK;TDSLAAT(1)PPAAK ; 137.93 4.53E-05 357290000 1750720 1446220 1132420 2643910 2290600 1542360 2539100 2239770 1328210 3418100 TRUE FALSE FALSE 2140161.624 1615342.849 1551349.282 2788340.109 2062539.821 1623115.585 1996600.542 1690462.896 1594769.564 2566030.575 0.834035901 0.629510367 0.604571628 1.086635575 0.803786144 0.632539456 0.778089147 0.658785173 0.621492814 1 21.29110693 TDSLAAT(ph)PPAAK ddPTM_HeLa_A486_30min_R1 1 TDSLAATPPAAK 12 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TDSLAAT(1)PPAAK 86.898 0.012207 226620000 824970 882850 468730 438980 881210 1026400 1158100 1129900 730060 1264700 TRUE FALSE FALSE 767143.8631 812889.7507 650234.809 1021967.625 770680.4248 899773.2037 868331.1309 872646.4355 793342.1886 948010.8882 0.80921419 0.857468792 0.68589382 1.078012539 0.812944698 0.949116951 0.915950588 0.920502545 0.836849237 1 19.8545441 -5.247480283 24.99970321 0.922443526 0.791519934 0.401385612 0.081307893 861.3607257 1542630.587 0.020819651 0.035831989 5.66E-06 5.247480283 -0.130923592 TDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_A485_30min_R1 1 TDSLFVLPSRDDATPVRDEPMDAESITFK 29 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 TDSLFVLPSRDDAT(1)PVRDEPMDAESITFK 131.23 3.47E-06 138580000 68866 53417 53734 107450 74862 54082 82340 61341 62380 119840 TRUE FALSE FALSE 84185.00412 59663.65348 73612.44266 113319.7214 67408.47642 56913.64989 64747.38634 46297.02357 74899.09382 89966.09349 0.935741465 0.663179329 0.818224287 1.25958255 0.749265349 0.632612217 0.719686538 0.514605245 0.832525798 1 16.45709376 -5.977326955 24.99976972 0.706358658 0.90752714 0.17144778 0.183561662 376.0070902 414591.1989 0.057273794 0.0649385 1.05E-06 5.977326955 0.201168482 TDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_A486_30min_R1 1 TDSLFVLPSRDDATPVRDEPMDAESITFK 29 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 TDSLFVLPS(0.001)RDDAT(0.999)PVRDEPMDAESITFK 214.12 1.30E-29 142390000 153000 170010 90369 64862 128920 186570 204350 187460 152170 204280 TRUE FALSE FALSE 142275.4901 156537.7884 125362.297 151002.0139 112749.6515 163552.8903 153219.4686 144779.4502 165360.2181 153126.9584 0.929134175 1.022274524 0.818682081 0.986122989 0.736314838 1.068086848 1.000604141 0.945486358 1.079889654 1 17.22436877 TDSQSVRHS(ph)PIAPS(ph)SPS(ph)PQVLAQK ddPTM_HeLa_A486_30min_R1 1 TDSQSVRHSPIAPSSPSPQVLAQK 24 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 3 0 T(0.173)DS(0.211)QS(0.257)VRHS(0.385)PIAPS(0.552)S(0.552)PS(0.87)PQVLAQK 83.088 0.0099144 163310000 66979 65897 40425 19267 68490 76127 92541 90336 53502 67166 TRUE FALSE FALSE 62284.11798 60675.08173 56078.64262 44854.5497 59899.34556 66735.22474 69386.263 69768.46482 58139.59644 50347.19642 1.237092081 1.205133275 1.113838438 0.890904616 1.189725542 1.325500315 1.378155447 1.38574677 1.154773266 1 15.61962382 -6.001589706 24.9994105 1.278425319 1.108781701 0.164497429 0.13774386 90.3843084 1421403.925 0.043719466 0.048890008 9.96E-07 6.001589706 -0.169643618 TDSREDEIS(ph)PPPPNPVVK ddPTM_HeLa_A485_30min_R1 7 TDSREDEISPPPPNPVVK 18 1 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 0 TDSREDEIS(1)PPPPNPVVK;TDS(0.001)REDEIS(0.999)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDS(0.002)REDEIS(0.998)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK ;;;;;; 224.19 2.15E-33 49844810000 10355980 9768821 8128295 14230340 15282360 12595820 18822260 20305040 10789801 20049960 TRUE FALSE FALSE 12659632.02 10911199.64 11135289.57 15007707.44 13760794.58 13255317.66 14800730.39 15325197.1 12955215.09 15051873.96 0.841066837 0.724906391 0.739794234 0.997065713 0.914224675 0.88064235 0.983314797 1.018158745 0.860704463 1 23.84343978 -5.256806791 24.96260145 0.948278034 0.764220867 0.6804788 0.0571115 217.1465082 1170084.866 0.015571724 0.025872368 5.54E-06 5.256806791 -0.184057167 TDSREDEIS(ph)PPPPNPVVK ddPTM_HeLa_A486_30min_R1 8 TDSREDEISPPPPNPVVK 18 1 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 0 T(0.001)DS(0.049)REDEIS(0.95)PPPPNPVVK;T(0.006)DS(0.368)REDEIS(0.626)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDS(0.001)REDEIS(0.999)PPPPNPVVK;TDS(0.002)REDEIS(0.998)PPPPNPVVK ;;;;;;; 235.37 4.82E-44 90191810000 8754750 8484860 5169650 3899800 9377020 9418200 12128230 11887470 7621340 12262650 TRUE FALSE FALSE 8141087.235 7812488.792 7171476.928 9078931.485 8200866.714 8256278.241 9093618.575 9180952.583 8281963.888 9192002.624 0.885670682 0.849922385 0.780186562 0.987698966 0.892174105 0.898202337 0.989296778 0.998797864 0.900996684 1 23.13194778 -5.810212306 0.769693134 0.970002147 0.842295441 0.418392389 0.053500107 0.70455331 0.911922381 0.031553908 0.051509124 1.55E-06 5.810212306 -0.127706706 TDSS(ph)PNQAR ddPTM_HeLa_A485_30min_R1 6 TDSSPNQAR 9 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 0 TDS(0.294)S(0.706)PNQAR;TDSS(1)PNQAR;TDS(0.009)S(0.991)PNQAR;TDS(0.001)S(0.999)PNQAR;TDS(0.111)S(0.889)PNQAR;TDS(0.116)S(0.884)PNQAR ;;;;; 229.86 1.47E-12 10078307000 2545793 2110639 746969 5861630 872966 2811238 1828301 2293736 2388967 5102860 TRUE FALSE FALSE 3112095.87 2357459.871 1023303.917 6181836.004 786050.4399 2958430.075 1437669.556 1731193.65 2868410.764 3830810.913 0.812385665 0.615394475 0.267124622 1.613714732 0.205191657 0.77227254 0.375291182 0.451913104 0.748773779 1 21.86921839 -8.015584211 22.61162991 1.000000033 0.637173104 0.077477146 0.37808814 697.8420606 1012525.827 0.3502308 0.090429204 9.65E-09 8.015584211 -0.362826928 TDSS(ph)PNQAR ddPTM_HeLa_A486_30min_R1 1 TDSSPNQAR 9 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 0 TDSS(1)PNQAR 230.93 1.08E-12 2203100000 1358900 386230 1032200 380970 390120 2783000 772150 779690 2611300 1904700 TRUE FALSE FALSE 1263648.127 355623.7282 1431895.483 886917.4132 341187.5119 2439661.755 578949.903 602171.6075 2837649.587 1427750.722 0.885062152 0.249079705 1.002903 0.621199065 0.238968544 1.708744893 0.405497888 0.421762425 1.987496516 1 20.44531268 -7.751564158 24.99749227 1.493748393 0.694201514 0.317085352 0.470836633 203.7554258 515782.1108 0.31319191 0.115194377 1.77E-08 7.751564158 -0.799546879 TDSTESSGTQS(ph)PKR ddPTM_HeLa_A485_30min_R1 1 TDSTESSGTQSPKR 14 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 TDSTES(0.001)S(0.001)GT(0.02)QS(0.977)PKR 104.26 0.00023334 298420000 47262 41270 29397 71441 56546 47801 77293 72525 42832 95576 TRUE FALSE FALSE 57775.26885 46096.1675 40272.17361 75343.64093 50916.08169 50303.78645 60778.71912 54738.13004 51427.98952 71750.66215 0.805222797 0.642449367 0.56127947 1.050075897 0.709625252 0.701091599 0.847082345 0.762893727 0.71675979 1 16.13070453 -14 0.275278102 2.722017011 0.738587421 0.253989295 0.124778544 319.9601115 3.091467679 314.3039758 0.150515593 1.00E-14 14 -1.98342959 TDSTS(ph)DGRPAWMR ddPTM_HeLa_A485_30min_R1 1 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 T(0.002)DS(0.261)T(0.337)S(0.401)DGRPAWMR 86.378 0.00093129 199540000 91991 99134 86416 112260 128410 94993 136370 140520 84485 161100 TRUE FALSE FALSE 112454.0806 110726.8589 118384.8745 118392.4795 115625.0495 99966.68659 107233.4355 106057.2497 101440.3646 120940.7348 0.929827992 0.915546438 0.978866836 0.978929719 0.956047189 0.826575816 0.886661021 0.876935714 0.838760941 1 16.88394072 -6.233662049 24.11003532 0.878149825 0.952833213 0.321256613 0.047351235 493.9474701 428733.9372 0.014985801 0.014981962 5.84E-07 6.233662049 0.074683388 TDSTS(ph)DGRPAWMR ddPTM_HeLa_A486_30min_R1 1 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 T(0.005)DS(0.282)T(0.316)S(0.398)DGRPAWMR 64.136 0.027315 422860000 336450 392780 264490 149280 388360 375500 436360 424850 330790 418670 TRUE FALSE FALSE 312866.5924 361654.6823 366907.6113 347531.3842 339648.2675 329174.6278 327178.1127 328120.9294 359463.1435 313832.3069 0.996922833 1.152381939 1.169119951 1.107379249 1.082260366 1.048887003 1.042525277 1.045529482 1.145398787 1 18.25963435 -5.913236216 3.068950031 1.058791891 1.114382349 0.150536236 0.054578085 0.461235482 8.753210913 0.018080806 0.02069079 1.22E-06 5.913236216 0.055590458 TDSVIIADQT(ph)PT(ph)PTR ddPTM_HeLa_A485_30min_R1 2 TDSVIIADQTPTPTR 15 0 P17544;K7ELQ4;P17544-2;P17544-4;P17544-1;P17544-3;K7ESA4;P17544-5 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 2 0 TDSVIIADQT(1)PT(0.999)PT(0.001)R;TDSVIIADQT(1)PT(0.996)PT(0.004)R ; 212.32 8.29E-26 1037030000 2010880 2052470 1803520 2012360 2886500 1451320 1908700 1760120 1165800 1581050 TRUE FALSE FALSE 2458193.319 2292488.512 2470717.099 2122290.131 2599109.925 1527308.871 1500890.652 1328447.81 1399765.367 1186923.332 2.071063271 1.931454586 2.081614736 1.788059998 2.189787541 1.286779718 1.264521989 1.119236411 1.179322479 1 20.17879532 -6.347801678 4.928188616 1.168767521 1.99834894 0.925064216 0.120101885 0.055995333 2.329355885 0.041329116 0.03636377 4.49E-07 6.347801678 0.829581419 TDSVIIADQT(ph)PT(ph)PTR ddPTM_HeLa_A486_30min_R1 2 TDSVIIADQTPTPTR 15 0 P17544;K7ELQ4;P17544-2;P17544-4;P17544-1;P17544-3;K7ESA4;P17544-5 P17544 ATF7 Cyclic AMP-dependent transcription factor ATF-7 2 0 TDSVIIADQT(1)PT(1)PTR;TDSVIIADQT(1)PT(0.998)PT(0.002)R ; 183.76 1.16E-17 589174000 662350 626020 519040 302007 758510 610500 831280 757950 499660 682340 TRUE FALSE FALSE 615922.6854 576411.8953 720026.1884 703087.5586 663370.603 535182.7171 623284.9516 585381.3309 542970.9311 511477.6227 1.204202604 1.126954279 1.407737419 1.374620369 1.296968965 1.046346298 1.218596717 1.144490599 1.061573189 1 18.9643116 -6.250156777 24.27058804 1.111006733 1.285597958 0.501094082 0.092956593 493.3146214 1061194.434 0.032946996 0.032641448 5.62E-07 6.250156777 0.174591224 TDSVKT(ph)PESEGNPLLEQLEK ddPTM_HeLa_A485_30min_R1 1 TDSVKTPESEGNPLLEQLEK 20 1 Q8WYK2;Q8WYK2-2 Q8WYK2 JDP2 Jun dimerization protein 2 1 0 T(0.001)DS(0.105)VKT(0.865)PES(0.03)EGNPLLEQLEK 158.88 1.79E-10 44981000 49078 24920 14651 96659 39317 26350 60163 38506 28914 102210 TRUE FALSE FALSE 59995.23178 27834.17722 20071.01458 101939.2364 35402.46143 27729.64526 47308.68356 29062.34312 34716.77459 76730.92804 0.781891127 0.362750431 0.261576591 1.328528652 0.461384507 0.361388113 0.616552996 0.37875657 0.452448256 1 16.22752058 -10.72968997 2.655185058 1.085591029 0.552552046 0.170083929 0.294041565 59955060.51 48169826.9 33977412.77 0.077738296 1.86E-11 10.72968997 -0.533038984 TDSYSAGQS(ph)VEILDGVELGEPAHK ddPTM_HeLa_A485_30min_R1 1 TDSYSAGQSVEILDGVELGEPAHK 24 0 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.186)DS(0.189)Y(0.162)S(0.189)AGQS(0.274)VEILDGVELGEPAHK 51.568 0.027199 45714000 34420 26937 19917 54525 42036 29250 47270 38079 28935 74165 TRUE FALSE FALSE 42076.61025 30087.04783 27285.12712 57503.56269 37850.74824 30781.48477 37170.37834 28740.06554 34741.98909 55677.03041 0.755726553 0.540385283 0.490060747 1.032805849 0.679826994 0.552857876 0.667607056 0.5161925 0.623991417 1 15.76479465 -10.3258196 3.246362113 1.002270943 0.648767621 0.327862186 0.149856094 40099980.66 55792239.6 878708.5134 0.040605952 4.72E-11 10.3258196 -0.353503322 TDTAVQATGS(ph)VPSTPIAHR ddPTM_HeLa_A485_30min_R1 1 TDTAVQATGSVPSTPIAHR 19 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L522 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 TDTAVQAT(0.048)GS(0.935)VPS(0.007)T(0.009)PIAHR 61.807 0.012706 441140000 145150 156990 139100 155890 204540 147260 238070 256590 147970 228640 TRUE FALSE FALSE 177438.1167 175348.6149 190558.8784 164405.876 184175.2794 154970.3059 187204.3996 193660.9002 177666.2217 171644.2558 1.033755053 1.021581608 1.110196654 0.957829175 1.073005785 0.902857513 1.090653449 1.128269043 1.035083993 1 17.38906205 TDTAVQATGS(ph)VPSTPIAHR ddPTM_HeLa_A486_30min_R1 2 TDTAVQATGSVPSTPIAHR 19 0 I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L522 I3L533 NDE1 Nuclear distribution protein nudE homolog 1 1 0 TDTAVQAT(0.102)GS(0.892)VPS(0.003)T(0.003)PIAHR;TDTAVQAT(0.018)GS(0.982)VPSTPIAHR ; 113.31 3.19E-05 474400000 160214 166371 137470 59253 229890 168658 183040 190287 167479 165757 TRUE FALSE FALSE 148983.8259 153187.156 190702.0656 137943.9785 201055.0526 147850.6907 137241.456 146962.804 181996.2146 124250.3683 1.199061443 1.232890962 1.534820928 1.110209816 1.61814452 1.18994167 1.104555728 1.182795722 1.464753924 1 16.9228906 TDTGIVTVEQS(ph)PSSSK ddPTM_HeLa_A485_30min_R1 4 TDTGIVTVEQSPSSSK 16 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TDTGIVTVEQS(0.979)PS(0.021)SSK;TDTGIVTVEQS(0.976)PS(0.024)S(0.001)SK;TDTGIVTVEQS(0.793)PS(0.184)S(0.018)S(0.004)K;TDTGIVTVEQS(0.995)PS(0.004)S(0.001)SK ;;; 443.76 1.26E-192 1515560000 1431350 1232100 932870 2109510 1864780 1317860 2120190 1699680 1252140 2622500 TRUE FALSE FALSE 1749748.869 1376183.377 1277977.433 2224747.19 1679115.956 1386861.112 1667194.086 1282830.815 1503433.013 1968759.014 0.888757261 0.699010579 0.649128423 1.130025145 0.85288039 0.704434165 0.846824865 0.651593621 0.763645018 1 20.9088551 -9.299600023 15.2461877 1 0.796846929 0.163243515 0.136830732 0 0 0.136222451 0.033038797 5.02E-10 9.299600023 -0.20315307 TDTGIVTVEQS(ph)PSSSK ddPTM_HeLa_A486_30min_R1 2 TDTGIVTVEQSPSSSK 16 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TDTGIVTVEQS(0.99)PS(0.004)S(0.004)S(0.001)K;TDTGIVTVEQS(0.975)PS(0.023)S(0.002)SK ; 349.2 2.54E-104 868380000 1238020 1163140 611170 526600 1064590 1317610 1577270 1392340 982080 1555250 TRUE FALSE FALSE 1151241.191 1070968.55 847831.3917 1225951.413 931059.1953 1155056.675 1182620.363 1075334.577 1067207.485 1165805.277 0.987507274 0.918651315 0.727249575 1.051591923 0.798640402 0.990780105 1.014423581 0.922396388 0.915425162 1 20.15289541 TDTGIVTVEQSPS(ph)SSK ddPTM_HeLa_A486_30min_R1 2 TDTGIVTVEQSPSSSK 16 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TDTGIVTVEQS(0.383)PS(0.602)S(0.014)SK;TDTGIVTVEQS(0.048)PS(0.884)S(0.064)S(0.005)K ; 384.32 1.82E-134 666910000 996570 1036690 555820 463140 989730 1129920 1355680 1226030 844610 1209300 TRUE FALSE FALSE 926715.5893 954538.9088 771048.3894 1078213.326 865588.8345 990521.9586 1016474.525 946889.733 917821.4748 906483.4088 1.022319416 1.053013105 0.850592942 1.189446288 0.954886572 1.092708315 1.121338256 1.044574808 1.012507748 1 19.78992109 -5.263169532 24.99993329 1.060828908 0.983078958 0.189192157 0.079199955 272.9265503 3943710.715 0.021259904 0.033505745 5.46E-06 5.263169532 -0.07774995 TDTPPSSVPTSVISTPSTEEIQSETPGDAQGS(ph)PPELKRPR ddPTM_HeLa_A485_30min_R1 2 TDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPPELKRPR 40 2 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TDTPPSSVPTSVISTPSTEEIQS(0.004)ET(0.019)PGDAQGS(0.977)PPELKRPR;TDTPPSSVPTSVISTPSTEEIQS(0.036)ET(0.036)PGDAQGS(0.927)PPELKRPR ; 233.32 9.31E-42 554890000 245081 272845 204767 256054 445880 312929 541270 539190 249624 418230 TRUE FALSE FALSE 299598.4229 304751.8493 280518.8344 270041.5817 401486.6216 329313.4786 425623.2427 406952.8071 299721.2471 313972.958 0.954217283 0.970630883 0.893449029 0.860079108 1.27872994 1.048859369 1.35560478 1.296139673 0.954608477 1 18.26028078 -5.755590899 24.99999694 1.175121532 0.921372031 0.449133428 0.126977099 123.3779125 527389.7441 0.037382636 0.046957685 1.76E-06 5.755590899 -0.253749501 TDTPPSSVPTSVISTPSTEEIQSETPGDAQGS(ph)PPELKRPR ddPTM_HeLa_A486_30min_R1 1 TDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPPELKRPR 40 2 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TDTPPSSVPTSVISTPSTEEIQSET(0.001)PGDAQGS(0.999)PPELKRPR 238.89 3.28E-52 325620000 153960 127790 74764 84292 167260 162960 243780 233030 111240 239020 TRUE FALSE FALSE 143168.1991 117663.455 103714.623 196236.0359 146280.6912 142855.6521 182783.6656 179974.156 120882.3728 179167.8362 0.799073104 0.656721973 0.578868536 1.095263748 0.81644504 0.797328667 1.020181241 1.00450036 0.674687909 1 17.45095215 -5.247844364 24.8653783 0.910986514 0.67607128 0.416804652 0.12852833 731.2564587 1337470.912 0.034536002 0.059397385 5.65E-06 5.247844364 -0.234915234 TDVKDDLSDPPVAS(ph)SCISEKSPR ddPTM_HeLa_A485_30min_R1 1 TDVKDDLSDPPVASSCISEKSPR 23 2 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 TDVKDDLSDPPVAS(0.277)S(0.277)CIS(0.277)EKS(0.168)PR 96.887 0.00055714 173280000 182970 112880 70426 351710 187150 149640 280210 212890 123640 458990 TRUE FALSE FALSE 223671.0453 126080.3341 96479.50807 370923.0267 168516.6889 157474.919 220340.8444 160678.3937 148453.4139 344572.2401 0.649126712 0.365903922 0.279997913 1.07647391 0.489060549 0.457015687 0.639461973 0.466312648 0.430833934 1 18.39444695 -10.14875533 4.235327037 1.000106232 0.539317304 0.30540591 0.208408408 284764991 480968836.7 422735.6329 0.052264149 7.10E-11 10.14875533 -0.460788927 TDVKDDLSDPPVASSCISEKS(ph)PR ddPTM_HeLa_A486_30min_R1 1 TDVKDDLSDPPVASSCISEKSPR 23 2 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 TDVKDDLSDPPVAS(0.038)S(0.067)CIS(0.188)EKS(0.708)PR 131.5 1.02E-06 147350000 572800 503750 178570 371450 380120 729740 916220 793740 424480 1140400 TRUE FALSE FALSE 532649.6779 463831.0154 247717.0863 864754.372 332441.8051 639712.0983 686972.0652 613022.7292 461274.2682 854836.4172 0.623101294 0.542596228 0.289783029 1.011602167 0.38889523 0.748344461 0.803629854 0.717122852 0.539605308 1 19.70528884 -13.99999999 0.105136417 2.135464047 0.4096688 0.257419279 0.1947401 243.0715227 1.715766957 60.38688813 2.752768347 1.00E-14 13.99999999 -1.725795247 TDVSNFDEEFTGEAPT(ph)LSPPRDAR ddPTM_HeLa_A485_30min_R1 1 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 TDVSNFDEEFT(0.002)GEAPT(0.54)LS(0.458)PPRDAR 54.683 0.037808 177400000 29905 29090 31306 36725 54984 31784 39055 50875 31999 49491 TRUE FALSE FALSE 36557.26408 32491.82245 42887.39215 38731.19376 49509.5999 33448.16109 30710.5802 38397.82648 38420.90579 37153.80451 0.983944028 0.874522081 1.154320337 1.042455659 1.332558012 0.900262074 0.82657969 1.03348303 1.034104213 1 15.18122233 TDVSNFDEEFTGEAPTLS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 TDVSNFDEEFTGEAPTLSPPR 21 0 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 TDVSNFDEEFTGEAPT(0.01)LS(0.99)PPR 80.752 0.0021345 47921000 21391 27789 14418 9792.9 19957 21729 24304 22663 18647 29433 TRUE FALSE FALSE 19891.60136 25586.89843 20001.03573 22798.36611 17453.80697 19048.2969 18222.88214 17503.12963 20263.33697 22062.78522 0.901590672 1.159731112 0.906550806 1.033340346 0.791097171 0.863367735 0.825955651 0.79333273 0.918439661 1 14.42932731 -5.753646518 24.98362303 0.852961745 1.00499436 0.350057766 0.089027246 168.7505003 541004.9216 0.024779353 0.031385262 1.76E-06 5.753646518 0.152032615 TDVSNFDEEFTGEAPTLS(ph)PPRDAR ddPTM_HeLa_A485_30min_R1 2 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 TDVSNFDEEFTGEAPT(0.094)LS(0.906)PPRDAR;TDVSNFDEEFTGEAPT(0.293)LS(0.707)PPRDAR ; 161.04 3.31E-14 769350000 68490 77700 87111 94783 163702 112840 137844 125423 101510 146009 TRUE FALSE FALSE 83725.36421 86786.3391 119336.9839 99960.75529 147403.2541 118748.1279 108392.5033 94662.81259 121882.1259 109611.6434 0.76383641 0.791762047 1.088725433 0.911953805 1.344777339 1.08335323 0.988877641 0.863620047 1.111945065 1 16.74204153 -4.754007022 23.4333036 1.049012138 0.777798813 0.433826211 0.123999014 73.35120583 231253.9856 0.032900195 0.083125459 1.76E-05 4.754007022 -0.271213326 TDVSNFDEEFTGEAPTLS(ph)PPRDAR ddPTM_HeLa_A486_30min_R1 3 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 TDVSNFDEEFTGEAPT(0.221)LS(0.779)PPRDAR;TDVSNFDEEFTGEAPT(0.018)LS(0.982)PPRDAR;TDVSNFDEEFTGEAPT(0.002)LS(0.998)PPRDAR ;; 183.12 9.16E-21 1207420000 312419 303890 279855 152815 534316 342940 449317 482057 291518 381500 TRUE FALSE FALSE 290520.0414 279808.6497 388222.3508 355761.0428 467297.105 300631.5496 336893.1342 372303.1443 316787.015 285969.9169 1.0159112 0.978454841 1.357563603 1.244050587 1.634077843 1.051269843 1.178071938 1.301896187 1.107763426 1 18.12550386 -10.16279246 13.29358809 0.999999583 1.21625186 0.100950358 0.184332741 0 0 0.183982517 0.044622315 6.87E-11 10.16279246 0.216252277 TDYNASVSVPDSSGPER ddPTM_HeLa_A485_30min_R1 1 TDYNASVSVPDSSGPER 17 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 261.35 7.91E-43 33660000 3777.7 4897.8 4338.5 5306.9 6654.4 5083.9 5605.7 5873.2 4912.1 6553.7 FALSE FALSE TRUE 4618.036332 5470.555105 5943.49169 5596.802509 5991.864571 5350.085143 4407.996401 4432.788491 5897.913414 4919.983202 0.938628475 1.11190524 1.208030891 1.13756537 1.217862811 1.087419392 0.895937287 0.900976347 1.198766982 1 12.26443767 -6.540232055 20.36173168 0.990811858 1.130238103 0.233631788 0.105468099 38.22957104 44853.54886 0.040767932 0.031601564 2.88E-07 6.540232055 0.139426245 TEAACLSAPHLAS(ph)PPATPK ddPTM_HeLa_A486_30min_R1 1 TEAACLSAPHLASPPATPK 19 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 TEAACLSAPHLAS(0.971)PPAT(0.029)PK 75.524 0.002872 371140000 315120 326080 176920 140980 317230 357850 427400 412020 283660 504550 TRUE FALSE FALSE 293031.7153 300240.2332 245428.1621 328208.5647 277440.0553 313702.1054 320459.9994 318212.0403 308247.8772 378207.3959 0.774791076 0.793850772 0.648924809 0.867800493 0.733565917 0.829444661 0.847312884 0.841369163 0.815023399 1 18.52881805 -13.99999958 0.123407046 1.706669643 0.695930244 0.601562037 0.054751541 98.94802782 0.783306116 17.20735631 0.470639315 1.00E-14 13.99999958 -1.010739399 TEAELSQDLET(ph)SPTAKPQIK ddPTM_HeLa_A485_30min_R1 1 TEAELSQDLETSPTAKPQIK 20 1 Q5VT06;H0Y7F7 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 TEAELS(0.001)QDLET(0.535)S(0.389)PT(0.075)AKPQIK 75.97 0.00037929 0 91975 71146 39649 158260 103690 102910 157120 138150 74111 160790 TRUE FALSE FALSE 112434.5214 79465.90581 54316.81503 166905.3431 93366.25952 108298.2085 123550.0284 104268.4959 88984.39791 120708.0121 0.931458645 0.658331658 0.449985167 1.382719673 0.773488502 0.89719155 1.023544554 0.86380758 0.737187171 1 16.88116191 -5.222239127 24.99981401 0.941327547 0.677765928 0.281626895 0.199862896 734.862287 468654.7819 0.053374157 0.092444817 5.99E-06 5.222239127 -0.263561619 TEAELSQDLET(ph)SPTAKPQIK ddPTM_HeLa_A486_30min_R1 1 TEAELSQDLETSPTAKPQIK 20 1 Q5VT06;H0Y7F7 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 TEAELSQDLET(0.495)S(0.495)PT(0.01)AKPQIK 109.08 3.55E-05 201380000 255050 191380 89307 101430 168800 242370 268810 291880 136170 336010 TRUE FALSE FALSE 237172.3121 176214.3518 123889.0621 236134.166 147627.53 212468.8536 201550.8948 225425.2957 147973.3252 251870.9089 0.94164234 0.699621693 0.491875233 0.937520601 0.586123783 0.8435625 0.800215061 0.895003304 0.58749669 1 17.94232498 TEAPAPASSTPQEPWPGPTAPS(ph)PTSRPPWAVDPAFAER ddPTM_HeLa_A486_30min_R1 2 TEAPAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAER 38 1 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 TEAPAPASSTPQEPWPGPT(0.048)APS(0.317)PT(0.317)S(0.317)RPPWAVDPAFAER;TEAPAPASSTPQEPWPGPT(0.066)APS(0.311)PT(0.311)S(0.311)RPPWAVDPAFAER ; 168.15 6.42E-15 264050000 48448.3 48743.7 48056.7 25354.3 64478.8 56189.5 67875 65455 52519.5 65748 TRUE FALSE FALSE 45052.32436 44881.07169 66665.54124 59026.09174 56391.26766 49257.41078 50891.95709 50552.32537 57071.93255 49284.27285 0.914131867 0.910657074 1.352673731 1.197665874 1.144204112 0.999454957 1.032620634 1.025729354 1.158015108 1 15.58883972 -6.254762501 24.39198153 1.044113135 1.112166367 0.051454214 0.127823339 1362.612737 4977895.532 0.046593874 0.04553297 5.56E-07 6.254762501 0.068053232 TEAQDLCRAS(ph)PEPPGPESSSR ddPTM_HeLa_A485_30min_R1 3 TEAQDLCRASPEPPGPESSSR 21 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR ;; 210.79 2.91E-27 4620800000 1179700 1886910 1846210 1397940 3509820 2168870 3176800 3870900 1743420 2122560 TRUE FALSE FALSE 1442120.195 2107567.711 2529199.906 1474305.922 3160369.997 2282428.679 2498050.728 2921555.706 2093308.402 1593444.855 0.905033011 1.322648665 1.587252862 0.925231845 1.983356994 1.432386363 1.567704537 1.833484037 1.313699935 1 20.60371766 -3.813646333 1.073423324 1.506173302 6.72E-16 0.203789552 0.313529786 5.898324033 2.896411578 0.093317718 12.70860669 0.000153587 3.813646333 -1.506173302 TEAQDLCRAS(ph)PEPPGPESSSR ddPTM_HeLa_A486_30min_R1 4 TEAQDLCRASPEPPGPESSSR 21 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR ;;; 242.56 9.15E-47 7560500000 1730530 2216080 2344240 1139860 4361560 2444600 3339050 3816360 1658920 2143180 TRUE FALSE FALSE 1609228.783 2040469.75 3251992.509 2653651.685 3814492.475 2143010.107 2503584.373 2947458.139 1802716.521 1606513.778 1.001689998 1.270122782 2.024254353 1.651807611 2.374391385 1.333950655 1.55839583 1.834692101 1.122129512 1 20.61550192 -7.859823399 5.649820637 1.013907421 1.644420263 0.275481153 0.370677236 0.277194137 12.42710203 0.366910154 0.095743545 1.38E-08 7.859823399 0.630512842 TEAQGEEDDAEGQDQDKKS(ph)PKPK ddPTM_HeLa_A485_30min_R1 2 TEAQGEEDDAEGQDQDKKSPKPK 23 3 A0A2R8Y611;O14617-2;O14617-5 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 TEAQGEEDDAEGQDQDKKS(1)PKPK;TEAQGEEDDAEGQDQDKKS(1)PKPK ; 227.41 2.48E-38 2516000000 1669860 612870 165880 5280150 701750 975460 2524830 1530640 453199 6574400 TRUE FALSE FALSE 2041314.596 684539.8152 227245.9148 5568591.224 631881.306 1026533.577 1985379.445 1155248.14 544151.8823 4935523.073 0.413596404 0.138696508 0.046042924 1.128267692 0.128027222 0.207988811 0.402263228 0.234068025 0.11025212 1 22.23477156 -10.2175655 4.478505725 1.000213007 0.315087153 0.326804749 0.29614992 403794173 345.275584 893317.6882 0.071413163 6.06E-11 10.2175655 -0.685125854 TEAQGEEDDAEGQDQDKKS(ph)PKPK ddPTM_HeLa_A486_30min_R1 3 TEAQGEEDDAEGQDQDKKSPKPK 23 3 A0A2R8Y611;O14617-2;O14617-5 A0A2R8Y611 AP3D1 AP-3 complex subunit delta-1 1 0 TEAQGEEDDAEGQDQDKKS(1)PKPK;TEAQGEEDDAEGQDQDKKS(1)PKPK;TEAQGEEDDAEGQDQDKKS(1)PKPK ;; 307.1 2.86E-90 3200770000 2802876 1769508 250169.7 3511749 755427.8 3365758 5665912 3878044 1249357 12127290 TRUE FALSE FALSE 2606408.866 1629285.742 347042.1076 8175529.146 660675.0012 2950524.998 4248240.89 2995098.038 1357652.271 9090537.649 0.28671669 0.179228755 0.038176192 0.899344952 0.07267722 0.324571011 0.467325592 0.329474246 0.149347852 1 23.11593419 -11.05267755 2.499861842 1.933970411 0.310334866 0.442822204 0.233744073 32211210.86 11459318.19 171873698.1 0.058175563 8.86E-12 11.05267755 -1.623635545 TEARSS(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_A485_30min_R1 1 TEARSSDEENGPPSSPDLDR 20 1 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 T(0.055)EARS(0.423)S(0.522)DEENGPPS(0.779)S(0.221)PDLDR 100.79 0.00020262 740920000 146670 197440 197580 108880 315780 248250 299880 356830 197270 167290 TRUE FALSE FALSE 179296.2355 220528.8905 270673.064 114827.8387 284339.8344 261247.9861 235808.1882 269316.883 236860.2795 125587.6817 1.427657816 1.755975486 2.155251695 0.914324057 2.264074235 2.080203906 1.877637878 2.144453017 1.886015223 1 16.93833544 TEARSS(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_A486_30min_R1 1 TEARSSDEENGPPSSPDLDR 20 1 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 T(0.013)EARS(0.437)S(0.55)DEENGPPS(0.557)S(0.443)PDLDR 132.79 3.98E-07 820220000 245770 233190 261540 99766 364970 234230 282450 316430 214720 256450 TRUE FALSE FALSE 228542.7922 214711.1751 362815.2923 232260.2899 319192.0594 205333.0841 211778.0225 244385.7966 233332.1025 192233.2508 1.188882731 1.11693047 1.887370113 1.208221205 1.660441459 1.068145512 1.10167217 1.271298257 1.213796789 1 17.55249838 -6.28822543 24.99107886 1.146106772 1.411003363 0.276189404 0.227098257 1109.551483 1035194.908 0.079823369 0.070415314 5.15E-07 6.28822543 0.264896591 TEARSS(ph)DEENGPPSS(ph)PDLDR ddPTM_HeLa_A485_30min_R1 1 TEARSSDEENGPPSSPDLDR 20 1 Q96B36;Q96B36-3;Q96B36-2 Q96B36 AKT1S1 Proline-rich AKT1 substrate 1 2 0 T(0.01)EARS(0.418)S(0.572)DEENGPPS(0.09)S(0.91)PDLDR 158.21 2.74E-10 979730000 152080 215040 209080 196370 360380 237930 364490 460860 251160 246680 TRUE FALSE FALSE 185909.6713 240187.0574 286427.3925 207097.1959 324499.3018 250387.6469 286613.7339 347833.3624 301565.5082 185187.2158 1.003901217 1.296995888 1.54669096 1.118312595 1.752277016 1.352078467 1.547697192 1.878279561 1.628435888 1 17.49862498 -3.519667258 0.648303655 1.545461938 4.94E-15 0.229417241 0.25682449 10.40452223 1.646404222 0.10901413 14.78201678 0.000302227 3.519667258 -1.545461938 TEASAKPRPHS(ph)DEYSK ddPTM_HeLa_A485_30min_R1 2 TEASAKPRPHSDEYSK 16 2 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 TEASAKPRPHS(1)DEYSK;TEASAKPRPHS(1)DEYSK ; 152.81 1.68E-08 788270000 559570 394450 239040 630780 634300 455890 818360 787510 404590 899910 TRUE FALSE FALSE 684044.416 440577.4962 327470.8433 665237.9142 571146.8648 479759.6955 643510.7006 594371.9377 485787.5019 675578.9986 1.012530611 0.652148005 0.484726204 0.984693005 0.845418324 0.710145958 0.952532127 0.879796351 0.719068389 1 19.36576495 -5.289797792 24.9995776 0.860952286 0.710036074 0.174084909 0.152355329 1247.195602 1099472.144 0.042993121 0.063782268 5.13E-06 5.289797792 -0.150916212 TEASAKPRPHS(ph)DEYSK ddPTM_HeLa_A486_30min_R1 2 TEASAKPRPHSDEYSK 16 2 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 TEASAKPRPHS(1)DEYSK;TEASAKPRPHS(1)DEYSK ; 214.79 7.52E-27 691670000 492020 438950 194358 247415 428920 526970 744920 687920 325460 629460 TRUE FALSE FALSE 457531.9388 404166.0034 269618.6227 575994.6237 375120.8541 461957.7992 558533.137 531295.6332 353671.1348 471839.1189 0.969677842 0.856575869 0.571420664 1.220743683 0.795018554 0.979057863 1.183736394 1.126010142 0.749558739 1 18.84793551 -5.265357409 24.99973911 1.010258286 0.804959906 0.24072998 0.169559777 493.4267277 3148408.761 0.047415945 0.073375535 5.43E-06 5.265357409 -0.20529838 TEDEEFLIQHLLQAPS(ph)PPR ddPTM_HeLa_A485_30min_R1 8 TEDEEFLIQHLLQAPSPPR 19 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR ;;;;;;; 263.57 1.98E-58 2559520000 738695 782133 723301 842344 917818 707387 913519 785994 734918 1199288 TRUE FALSE FALSE 903015.1543 873596.6507 990880.139 888359.1198 826436.8173 744424.6895 718338.2029 593227.7391 882409.3015 900327.5729 1.002985115 0.970309782 1.100577355 0.986706557 0.917929032 0.8268376 0.797863161 0.658902112 0.980098053 1 19.78009048 -5.940249541 2.275768513 0.828126619 1.021085646 0.378211476 0.095956144 0.276753631 2.908180489 0.032851879 0.037334314 1.15E-06 5.940249541 0.192959028 TEDEEFLIQHLLQAPS(ph)PPR ddPTM_HeLa_A486_30min_R1 8 TEDEEFLIQHLLQAPSPPR 19 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR ;;;;;;; 205.73 8.09E-26 2326026000 463328 473746 331062 181430 457225 455397 522088 495023 446779 522073 TRUE FALSE FALSE 430851.0998 436204.6416 459258.0725 422378.209 399875.577 399214.7483 391456.0603 382317.0692 485506.1634 391342.5227 1.100956515 1.114636454 1.17354503 1.079305684 1.021804567 1.020115947 1.000290123 0.976937202 1.240616941 1 18.57807235 -5.511817644 5.528938427 1.039471313 1.128424257 0.225230594 0.071519869 0.246781624 25.43098973 0.02055839 0.028792599 3.08E-06 5.511817644 0.088952945 TEDGDWEWS(ph)DDEMDEK ddPTM_HeLa_A485_30min_R1 2 TEDGDWEWSDDEMDEK 16 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK ; 340.32 4.29E-91 1688420000 986200 794860 475560 1331230 745510 819000 1293610 1134180 595640 1596320 TRUE FALSE FALSE 1205576.788 887811.9626 651489.4337 1403951.724 671284.4068 861881.5736 1017219.656 856020.5767 715179.4845 1198386.802 1.00599972 0.740839236 0.543638692 1.171534701 0.560156709 0.71920149 0.848824148 0.714310751 0.596785181 1 20.19266221 -4.258951555 23.58908642 0.757610595 1.005999904 0.126604945 0.187796152 209.9062011 1990008.233 0.044362696 0.288898141 5.51E-05 4.258951555 0.248389309 TEDGDWEWS(ph)DDEMDEK ddPTM_HeLa_A486_30min_R1 7 TEDGDWEWSDDEMDEK 16 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK ;;;;;; 338.94 4.63E-102 2252142000 1773071 1450250 568858.1 783971.4 925022 1668618 2010947 1590372 1135730 2876407 TRUE FALSE FALSE 1648787.879 1335326.908 789135.1909 1825125.039 808997.1153 1462760.876 1507786.791 1228279.013 1234175.991 2156135.965 0.76469569 0.619314797 0.365995097 0.846479567 0.375206911 0.678417734 0.699300422 0.569666771 0.572401746 1 21.04001673 -10.11666746 4.013344206 1.000110235 0.606729927 0.393770409 0.145054527 82533644.25 128651566.7 114604.9378 0.033668529 7.64E-11 10.11666746 -0.393380308 TEDGDWEWS(ph)DDEMDEKSEEGK ddPTM_HeLa_A485_30min_R1 4 TEDGDWEWSDDEMDEKSEEGK 21 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 TEDGDWEWS(1)DDEMDEKSEEGK;TEDGDWEWS(1)DDEMDEKSEEGK;TEDGDWEWS(1)DDEMDEKSEEGK;TEDGDWEWS(1)DDEMDEKSEEGK ;;; 282.6 3.35E-73 2204620000 601050 208017 302072 2060860 1259070 560520 1634590 1264500 554690 3090670 TRUE FALSE FALSE 734751.4989 232342.7786 413821.0031 2173439.563 1133712.57 589867.9605 1285346.493 954379.3923 666011.1951 2320222.849 0.316672814 0.100138131 0.17835399 0.936737419 0.488622276 0.254229011 0.553975448 0.411330917 0.287046219 1 21.14583195 -14 0.389440353 9.999999613 0.384677011 0.395756222 0.224215108 754.0115974 5.488293689 5750.768614 0.157782433 1.00E-14 14 -9.615322602 TEDGDWEWS(ph)DDEMDEKSEEGK ddPTM_HeLa_A486_30min_R1 5 TEDGDWEWSDDEMDEKSEEGK 21 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 TEDGDWEWS(1)DDEMDEKSEEGK;TEDGDWEWS(1)DDEMDEKSEEGK;TEDGDWEWS(1)DDEMDEKSEEGK;TEDGDWEWS(1)DDEMDEKSEEGK;T(0.001)EDGDWEWS(0.993)DDEMDEKS(0.006)EEGK ;;;; 303.8 8.51E-88 2756046000 699093 786230 328982 1373564 1121269 1628949 2633160 2469480 771220 2061190 TRUE FALSE FALSE 650090.1908 723926.2714 456372.6408 3197726.408 980628.9866 1427985.834 1974315.517 1907233.312 838069.9706 1545054.608 0.420755478 0.468544133 0.295376382 2.069652679 0.634688885 0.924230009 1.277828956 1.234411588 0.542420939 1 20.5592264 TEDGGWEWS(ph)DDEFDEESEEGK ddPTM_HeLa_A486_30min_R1 2 TEDGGWEWSDDEFDEESEEGK 21 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TEDGGWEWS(1)DDEFDEESEEGK;TEDGGWEWS(1)DDEFDEESEEGK ; 232.07 1.58E-36 190893000 212100 228170 118318 155205 187213 241310 284450 264410 174279 370500 TRUE FALSE FALSE 197232.8853 210088.9782 164133.8983 361325.0836 163730.9998 211539.6257 213277.6014 204209.615 189385.644 277724.3884 0.710174884 0.756465715 0.590995624 1.301020359 0.589544911 0.76168905 0.767946966 0.735295939 0.681919385 1 18.08329435 -11.44181752 2.140781055 3.028790467 0.770238743 0.120147593 0.189579673 11723457.24 1042717.663 115156771.8 0.046482092 3.62E-12 11.44181752 -2.258551725 TEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_HeLa_A485_30min_R1 2 TEDGGWEWSDDEFDEESEEGKAAISQLR 28 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TEDGGWEWS(1)DDEFDEESEEGKAAISQLR;TEDGGWEWS(1)DDEFDEESEEGKAAISQLR ; 283.28 1.08E-77 476480000 94124 69248 70936 186829 170725 128047 215143 209080 106900 262335 TRUE FALSE FALSE 115061.5591 77345.95122 97178.17829 197034.9952 153727.0195 134751.3429 169175.9405 157802.8022 128353.8495 196939.7124 0.584247624 0.392739231 0.493441252 1.000483817 0.78057908 0.684226362 0.859024005 0.801274665 0.651741834 1 17.58739453 -5.199756642 10.26376893 0.810643999 0.47976997 0.634048954 0.116243106 0.41735739 67.98694626 0.030688435 0.053196756 6.31E-06 5.199756642 -0.330874029 TEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_HeLa_A486_30min_R1 3 TEDGGWEWSDDEFDEESEEGKAAISQLR 28 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TEDGGWEWS(1)DDEFDEESEEGKAAISQLR;TEDGGWEWS(1)DDEFDEESEEGKAAISQLR;TEDGGWEWS(1)DDEFDEESEEGKAAISQLR ;; 304.44 6.29E-93 766500000 198760 184555 134138.4 214419 274700 265453 420109 450836 205597 391535 TRUE FALSE FALSE 184827.9504 169930.1897 186080.3808 499178.2681 240244.5645 232704.1078 314993.2847 348190.4845 223418.3135 293492.0875 0.629754458 0.578994109 0.634021797 1.700823597 0.818572543 0.792880346 1.073259887 1.186370942 0.761241352 1 18.16296208 -5.046039819 24.99998843 1.046360642 0.604905924 0.378112523 0.254856643 416.3691362 226091.2335 0.068688615 0.118978053 8.99E-06 5.046039819 -0.441454718 TEEAAADGGGGMQNEPLT(ph)PGYHGFPAR ddPTM_HeLa_A485_30min_R1 2 TEEAAADGGGGMQNEPLTPGYHGFPAR 27 0 O43251-6;O43251-8 O43251-6 1 0 TEEAAADGGGGMQNEPLT(1)PGYHGFPAR;TEEAAADGGGGMQNEPLT(1)PGYHGFPAR ; 214.44 2.44E-29 228380000 64652 83157 73756 79735 95678 67981 82845 80509 52515 91139 TRUE FALSE FALSE 79033.61435 92881.48778 101041.4136 84090.72115 86151.96237 71540.38004 65144.48897 60764.04152 63054.2788 68419.72459 1.155129092 1.357525017 1.476787787 1.229042088 1.259168506 1.045610465 0.952130243 0.888107076 0.921580424 1 16.06212468 -6.322217868 1.64960171 0.924949064 1.323536389 0.810275132 0.082269644 0.154021539 0.831655941 0.037222126 0.032363314 4.76E-07 6.322217868 0.398587325 TEEARPSPAPGPGT(ph)PTGT(ph)PTR ddPTM_HeLa_A485_30min_R1 2 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 TEEARPSPAPGPGT(0.895)PT(0.111)GT(0.964)PT(0.03)R;TEEARPS(0.001)PAPGPGT(0.991)PT(0.109)GT(0.888)PT(0.011)R ; 104.83 9.52E-05 1539650000 1049870 1066010 973910 1169060 1145690 843460 1018170 790510 911830 1572850 TRUE FALSE FALSE 1283409.959 1190670.596 1334199.837 1232922.788 1031621.081 887622.2614 800629.6618 596636.183 1094825.917 1180767.441 1.086928649 1.00838705 1.129942942 1.044170719 0.87368693 0.751733348 0.678058722 0.505295253 0.927215537 1 20.17129342 -5.937080278 2.28836481 0.73524358 1.072569216 0.522897839 0.130839574 0.21483923 2.283423272 0.0446666 0.050854342 1.16E-06 5.937080278 0.337325637 TEEARPSPAPGPGT(ph)PTGT(ph)PTR ddPTM_HeLa_A486_30min_R1 2 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 TEEARPS(0.001)PAPGPGT(0.891)PT(0.115)GT(0.983)PT(0.011)R;TEEARPS(0.002)PAPGPGT(0.99)PT(0.322)GT(0.664)PT(0.022)R ; 90.166 0.00088055 989610000 429810 420360 291677 143023 382420 362400 408260 353240 348252 395590 TRUE FALSE FALSE 399682.5385 387049.1427 404622.1458 332964.772 334453.3177 317690.7726 306109.0299 272814.9632 378438.7638 296531.6891 1.347857761 1.305253896 1.364515701 1.122864045 1.127883899 1.071355219 1.032297866 0.92001959 1.276216936 1 18.17782676 -5.403914145 2.283985334 1.063571838 1.340654401 0.642918968 0.088912095 0.187708094 1.917414792 0.026647679 0.044362636 3.95E-06 5.403914145 0.277082563 TEEARPSPAPGPGT(ph)PTGT(ph)PTRTPSR ddPTM_HeLa_A485_30min_R1 1 TEEARPSPAPGPGTPTGTPTRTPSR 25 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 TEEARPS(0.003)PAPGPGT(0.996)PT(0.04)GT(0.927)PT(0.014)RT(0.018)PS(0.003)R 133.56 6.12E-06 359130000 102240 215740 121380 80316 157400 169260 185390 252830 102220 104140 TRUE FALSE FALSE 124982.9353 240968.9163 166283.513 84703.45971 141728.7033 178122.1919 145779.912 190823.0461 122734.6164 78179.81455 1.59865991 3.082239548 2.126936652 1.083444111 1.812855456 2.278365495 1.864674569 2.440822445 1.569901605 1 16.25450854 -10.95068792 0.384278229 2.87E-10 2.049875324 0.25096633 0.516981601 61.67908548 3.783275557 55.46562413 0.366704485 1.12E-11 10.95068792 2.049875324 TEEARPSPAPGPGT(ph)PTGT(ph)PTRTPSR ddPTM_HeLa_A486_30min_R1 1 TEEARPSPAPGPGTPTGTPTRTPSR 25 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 TEEARPS(0.037)PAPGPGT(0.944)PT(0.057)GT(0.875)PT(0.033)RT(0.044)PS(0.01)R 105.7 0.00077421 192120000 75049 58293 50616 21634 83505 39885 59422 80143 43366 71874 TRUE FALSE FALSE 69788.45265 53673.65038 70215.87074 50365.04532 73031.02425 34964.39422 44553.9871 61896.18841 47124.9998 53876.28258 1.295346474 0.996238935 1.303279799 0.934827774 1.355531985 0.648975626 0.826968472 1.148857817 0.87468915 1 15.71736269 -6.253038974 24.99788953 0.904643714 1.160556734 0.392012273 0.171912102 718.9918346 2139573.287 0.055915954 0.055035079 5.58E-07 6.253038974 0.25591302 TEEARPSPAPGPGT(ph)PTGTPTR ddPTM_HeLa_A485_30min_R1 4 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 TEEARPSPAPGPGT(0.996)PT(0.004)GTPTR;TEEARPSPAPGPGT(0.971)PT(0.029)GTPTR;TEEARPSPAPGPGT(0.998)PT(0.002)GTPTR;TEEARPSPAPGPGT(0.988)PT(0.011)GTPTR ;;; 241.63 2.44E-46 7776800000 523226 625670 483642 556978 639130 506671 685410 640280 484639 838230 TRUE FALSE FALSE 639615.8186 698836.6639 662561.3018 587404.2978 575495.9731 533199.5101 538966.5542 483250.3261 581901.6019 629274.6875 1.016433413 1.110543103 1.052896795 0.93346246 0.91453857 0.847323944 0.856488533 0.76794814 0.924717955 1 19.26333039 -5.445865563 1.792292482 0.866894308 1.071202399 0.613403707 0.061332625 0.20888587 1.332018362 0.019316122 0.033490585 3.58E-06 5.445865563 0.204308091 TEEARPSPAPGPGT(ph)PTGTPTR ddPTM_HeLa_A486_30min_R1 4 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 TEEARPSPAPGPGT(1)PTGTPTR;TEEARPSPAPGPGT(0.997)PT(0.003)GTPTR;TEEARPSPAPGPGT(0.987)PT(0.013)GTPTR;TEEARPSPAPGPGT(0.998)PT(0.002)GTPTR ;;; 274.34 1.80E-72 6584450000 1173100 1116140 811885 307773 1077980 969920 1108430 1064540 963850 1117380 TRUE FALSE FALSE 1090871.748 1027693.001 1126268.615 716511.098 942769.6966 850261.1318 831089.0902 822167.4807 1047397.294 837580.7751 1.302407816 1.226977782 1.344668656 0.855453133 1.1255866 1.015139264 0.992249482 0.981597841 1.250503026 1 19.6758688 -5.243967543 24.96031715 1.032340045 1.284914074 0.585388279 0.100167882 565.4931127 807863.9978 0.026054659 0.044991727 5.70E-06 5.243967543 0.252574028 TEELIES(ph)PKLESSEGEIIQTVDR ddPTM_HeLa_A485_30min_R1 6 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 TEELIES(1)PKLESSEGEIIQTVDR;TEELIES(0.965)PKLES(0.034)S(0.001)EGEIIQTVDR;TEELIES(0.989)PKLES(0.01)SEGEIIQTVDR;TEELIES(0.995)PKLES(0.004)SEGEIIQTVDR;TEELIES(0.999)PKLESSEGEIIQTVDR;TEELIES(1)PKLESSEGEIIQTVDR ;;;;; 233.87 1.42E-40 2541753000 409200 302077 282628 870889 622278 386187 795703 669227 373211 1194807 TRUE FALSE FALSE 500225.1283 337402.2774 387183.8583 918463.4609 560321.8174 406407.1542 625694.5538 505098.0289 448111.0244 896963.6037 0.557687209 0.3761605 0.431660612 1.023969598 0.624687351 0.453092135 0.697569613 0.563119871 0.49958663 1 19.77468992 -11.05090277 2.626202318 1.566074212 0.583907654 0.345102159 0.173181108 19747811.42 7445399.087 67136793.03 0.045200196 8.89E-12 11.05090277 -0.982166558 TEELIES(ph)PKLESSEGEIIQTVDR ddPTM_HeLa_A486_30min_R1 4 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 TEELIES(1)PKLESSEGEIIQTVDR;TEELIES(0.998)PKLES(0.001)SEGEIIQTVDR;TEELIES(0.999)PKLES(0.001)S(0.001)EGEIIQTVDR;TEELIES(1)PKLESSEGEIIQTVDR ;;; 193.9 9.36E-22 1497940000 173628 181697 122723 188780 226633 226059 312990 297502 177609 342761 TRUE FALSE FALSE 161457.5738 167298.668 170244.6322 439489.3804 198206.5759 198170.139 234676.5915 229767.289 193004.2911 256931.4146 0.628407289 0.651141349 0.662607305 1.710531899 0.771437686 0.77129587 0.913382242 0.894274799 0.751189929 1 17.97102377 -5.048612098 24.99996999 0.967687148 0.644045011 0.245449116 0.261811033 547.1574869 281388.4882 0.072685288 0.125898111 8.94E-06 5.048612098 -0.323642137 TEEPLGSPHPSGTVESPGEGPQDTR ddPTM_HeLa_A486_30min_R1 1 TEEPLGSPHPSGTVESPGEGPQDTR 25 0 A0A0A0MR84;M0R202;A0A0B4J2G2;Q9NWS9-2;Q9NWS9 A0A0A0MR84 ZNF446 Zinc finger protein 446 0 0 19.324 0.036901 211120000 156750 143130 92029 125310 198150 203410 264820 249560 112680 230410 FALSE FALSE TRUE 145762.6345 131787.8575 127665.0934 291728.0128 173296.1793 178315.3423 198559.235 192740.6359 122447.1931 172713.8363 0.843954588 0.76304169 0.739171199 1.689083047 1.003371722 1.032432295 1.149642897 1.115953649 0.708959952 1 17.39802414 TEES(ph)PAS(ph)DEAGEK ddPTM_HeLa_A486_30min_R1 2 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 2 0 TEES(1)PAS(1)DEAGEK;TEES(1)PAS(1)DEAGEK ; 255.28 2.80E-42 164600000 953450 937080 339210 392580 509330 1015980 1066260 827620 756000 1741160 TRUE FALSE FALSE 886618.0786 862822.368 470561.1964 913946.0799 445445.0821 890638.7173 799470.4703 639188.9928 821530.6887 1305162.203 0.679316392 0.661084397 0.36053848 0.700254787 0.341294807 0.682396958 0.612544915 0.489739123 0.629447196 1 20.31579768 -8.037528239 20.121986 1.000000003 0.564337752 0.521028813 0.124162233 328.9227271 176363.5648 0.113750187 0.029370167 9.17E-09 8.037528239 -0.435662251 TEES(ph)PASDEAGEK ddPTM_HeLa_A485_30min_R1 1 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEES(1)PASDEAGEK 193.45 1.83E-15 0 296230 249270 122780 432760 193060 202270 265310 201660 163710 542710 TRUE FALSE FALSE 362125.3415 278419.9581 168201.4313 456400.583 173838.2685 212860.5444 208624.3511 152202.5688 196565.0954 407422.3848 0.888820435 0.68336932 0.412842881 1.120214794 0.426678246 0.522456675 0.512059128 0.37357439 0.482460225 1 18.63616572 -4.357933139 3.596926755 0.587529155 0.89744941 0.105694737 0.240551985 0.5129556 10.81132428 0.059893887 0.351379295 4.39E-05 4.357933139 0.309920256 TEES(ph)PASDEAGEK ddPTM_HeLa_A486_30min_R1 1 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEES(1)PASDEAGEK 289.99 1.85E-57 688590000 674530 655140 238820 247500 392900 723300 749350 654050 521710 1116200 TRUE FALSE FALSE 627248.9303 603224.3204 331297.4998 576192.508 343618.8184 634066.6 561854.7042 505137.0928 566932.2429 836696.2548 0.749673405 0.720959747 0.395959105 0.688651951 0.410685259 0.757821726 0.671515739 0.603728163 0.677584296 1 19.67434445 -9.452117487 0.567659286 1.051039448 0.612995463 0.45765927 0.121600314 8.659341714 2.381849106 1.025194763 0.052276552 3.53E-10 9.452117487 -0.438043985 TEESEPLPSCPGS(ph)PPLPDDLLPLDCKNPNAPFQIR ddPTM_HeLa_A485_30min_R1 1 TEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIR 35 1 O94864-2;O94864 O94864-2 SUPT7L STAGA complex 65 subunit gamma 1 0 TEESEPLPSCPGS(1)PPLPDDLLPLDCKNPNAPFQIR 87.347 5.04E-05 27009000 24503 20974 16857 26270 28091 19278 28779 27812 17861 35297 TRUE FALSE FALSE 29953.60782 23426.72685 23093.10578 27705.06358 25294.16141 20287.36627 22630.13155 20991.06339 21445.53887 26498.10749 1.130405552 0.884090566 0.871500192 1.045548766 0.954564827 0.765615668 0.854028219 0.792172173 0.809323416 1 14.6936017 -6.157774748 6.623215946 0.8321988 0.971377519 0.342074282 0.091475915 0.280614291 15.4507811 0.029501538 0.029533245 6.95E-07 6.157774748 0.139178719 TEESEPLPSCPGS(ph)PPLPDDLLPLDCKNPNAPFQIR ddPTM_HeLa_A486_30min_R1 1 TEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIR 35 1 O94864-2;O94864 O94864-2 SUPT7L STAGA complex 65 subunit gamma 1 0 TEESEPLPSCPGS(1)PPLPDDLLPLDCKNPNAPFQIR 105.37 6.34E-05 36347000 31528 39751 23591 15331 33286 39407 45809 38996 25988 50608 TRUE FALSE FALSE 29318.05001 36600.98599 32726.06699 35691.34279 29110.9595 34545.365 34347.10368 30117.46208 28240.66076 37935.4274 0.772840904 0.964823346 0.86267822 0.94084462 0.767381878 0.910635977 0.905409693 0.793913873 0.744440295 1 15.21125817 -7.257819665 24.91600948 0.826882814 0.877700305 0.00773285 0.086414577 866.0946889 5961751.242 0.040145205 0.021991108 5.52E-08 7.257819665 0.050817491 TEESPAS(ph)DEAGEK ddPTM_HeLa_A486_30min_R1 2 TEESPASDEAGEK 13 0 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEES(0.001)PAS(0.999)DEAGEK;TEES(0.001)PAS(0.999)DEAGEK ; 232.22 3.05E-28 272440000 506470 532650 227130 210530 296510 562570 604330 473420 428540 851080 TRUE FALSE FALSE 470969.0684 490440.8741 315080.8188 490124.4796 259318.951 493165.8332 453120.242 365632.6007 465686.1922 637964.0284 0.738237655 0.768759448 0.493884929 0.768263504 0.406478954 0.773030784 0.710259861 0.573124164 0.729956818 1 19.28311555 -8.028990681 18.94849295 1.000000006 0.653745961 0.427667233 0.120041785 107.9554101 70561.63438 0.110661857 0.028572762 9.35E-09 8.028990681 -0.346254045 TEESPAS(ph)DEAGEKEAK ddPTM_HeLa_A485_30min_R1 1 TEESPASDEAGEKEAK 16 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEES(0.004)PAS(0.996)DEAGEKEAK 109.89 9.75E-05 606800000 201480 214290 118460 383440 233940 214580 361570 332170 165580 525840 TRUE FALSE FALSE 246298.5309 239349.3514 162283.2835 404386.3563 210648.1122 225815.077 284317.6157 250704.7867 198810.3872 394757.7654 0.623923207 0.606319552 0.411095861 1.024391137 0.5336136 0.572034541 0.720233117 0.63508513 0.503626286 1 18.59060812 -10.20101018 4.674974052 1.000068053 0.629227654 0.343597235 0.155175283 205846827.1 19.48645509 151143.6047 0.036464197 6.29E-11 10.20101018 -0.370840399 TEESPAS(ph)DEAGEKEAK ddPTM_HeLa_A486_30min_R1 1 TEESPASDEAGEKEAK 16 1 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEES(0.016)PAS(0.984)DEAGEKEAK 119.31 3.62E-05 706520000 358950 314610 114580 224510 246220 402510 552950 446250 254890 730150 TRUE FALSE FALSE 333789.4586 289679.1578 158948.4446 522670.6261 215336.7917 352852.4086 414596.0615 344648.6166 276984.0704 547315.6875 0.609866419 0.529272528 0.29041456 0.95497103 0.393441658 0.644696318 0.757508091 0.629707177 0.506077346 1 19.06201368 -14 0.224042126 3.086027057 0.544501624 0.326686962 0.175250098 184.4172486 1.846620775 174.2332911 0.31551515 1.00E-14 14 -2.541525433 TEESPASDEAGEKEAKS(ph)D ddPTM_HeLa_A485_30min_R1 2 TEESPASDEAGEKEAKSD 18 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D ; 176.48 4.57E-13 1752990000 472760 286030 200077 1297280 595340 497820 1111560 1000450 355060 2092170 TRUE FALSE FALSE 577923.831 319478.7204 274093.8082 1368147.122 536065.8592 523885.0854 874066.1254 755088.0689 426317.2852 1570630.523 0.367956577 0.203407941 0.174511958 0.871081455 0.341306152 0.333550812 0.556506519 0.48075474 0.271430664 1 20.58291241 -14 0.305595872 6.08337709 0.37624387 0.460921944 0.193112688 268.8122465 2.465080085 878.2155467 0.194217702 1.00E-14 14 -5.70713322 TEESPASDEAGEKEAKS(ph)D ddPTM_HeLa_A486_30min_R1 4 TEESPASDEAGEKEAKSD 18 2 P05114;A6NL93;A6NEL0 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D ;;; 217.94 1.86E-34 3115280000 1140200 948510 342018 1552490 919150 1538610 2643760 2146870 824910 3036680 TRUE FALSE FALSE 1060277.868 873346.6132 474456.5292 3614275.179 803861.6363 1348791.942 1982263.285 1658074.567 896413.863 2276275.563 0.465795041 0.383673501 0.208435453 1.587802126 0.353147769 0.592543347 0.870836255 0.728415572 0.393807269 1 21.11824379 TEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TEFLDLDNSPLSPPSPR 17 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 TEFLDLDNSPLS(0.001)PPS(0.999)PR;TEFLDLDNSPLS(0.019)PPS(0.981)PR ; 202.6 4.27E-25 330590000 342210 325740 410270 544040 601200 333380 507200 400740 382560 682530 TRUE FALSE FALSE 418333.4339 363832.4594 562045.9458 573759.5276 541342.4171 350835.2613 398832.5766 302457.8867 459336.283 512387.832 0.816439048 0.710072404 1.096915092 1.119775865 1.056509119 0.684706465 0.778380265 0.590290924 0.896462122 1 18.96687669 -6.264069912 24.99498426 0.763636906 0.962549886 0.217885682 0.157067467 342.9364114 3258521.932 0.057116092 0.052677004 5.44E-07 6.264069912 0.19891298 TEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TEFLDLDNSPLSPPSPR 17 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 TEFLDLDNSPLS(0.001)PPS(0.999)PR;TEFLDLDNSPLS(0.067)PPS(0.933)PR ; 171.71 3.25E-12 142021000 72443 115407 92645 40632 135495 123868 132641 136022 108811 118848 TRUE FALSE FALSE 67365.1198 106261.729 128519.6251 94593.34943 118499.9537 108586.4256 99452.81887 105052.7599 118242.8251 89087.68723 0.756166446 1.192776828 1.442619391 1.061800484 1.330149624 1.218871305 1.116347522 1.179206276 1.327263382 1 16.44293843 -4.265662703 5.727716466 1.218421603 0.742440312 0.535195512 0.126057982 0.095707104 13.56519373 0.029657305 0.178470375 5.42E-05 4.265662703 -0.475981291 TEFLHSQNS(ph)LS(ph)PRS(ph)SLS(ph)DEAPVLPNTTPDLLLATTAK ddPTM_HeLa_A485_30min_R1 3 TEFLHSQNSLSPRSSLSDEAPVLPNTTPDLLLATTAK 37 1 Q96FS4;F6RY50 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 4 0 T(0.571)EFLHS(0.583)QNS(0.596)LS(0.596)PRS(0.596)S(0.071)LS(0.412)DEAPVLPNT(0.292)T(0.281)PDLLLAT(0.001)T(0.001)AK;T(0.572)EFLHS(0.584)QNS(0.596)LS(0.597)PRS(0.596)S(0.067)LS(0.412)DEAPVLPNT(0.292)T(0.282)PDLLLAT(0.001)T(0.001)AK;T(0.576)EFLHS(0.589)QNS(0.602)LS(0.603)PRS(0.579)S(0.062)LS(0.422)DEAPVLPNT(0.289)T(0.277)PDLLLATTAK ;; 49.822 0.016194 759730000 89281 160801 192788 50139.5 451786 151932 219233 243108 217273 116825 TRUE FALSE FALSE 109141.2504 179605.2782 264108.3038 52878.49393 406804.5995 159886.9246 172392.0786 183485.3818 260877.6982 87702.6775 1.244446048 2.047888198 3.011405253 0.602929072 4.638451312 1.823056367 1.965642139 2.092129762 2.97456937 1 16.42033327 TEFLHSQNS(ph)LS(ph)PRS(ph)SLS(ph)DEAPVLPNTTPDLLLATTAK ddPTM_HeLa_A486_30min_R1 1 TEFLHSQNSLSPRSSLSDEAPVLPNTTPDLLLATTAK 37 1 Q96FS4;F6RY50 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 4 0 T(0.567)EFLHS(0.579)QNS(0.592)LS(0.592)PRS(0.614)S(0.068)LS(0.412)DEAPVLPNT(0.292)T(0.281)PDLLLAT(0.001)T(0.001)AK 43.42 0.034036 120890000 17253 18753 21135 3138.2 32517 14988 17064 18857 15973 8355 TRUE FALSE FALSE 16043.65379 17266.94398 29319.03801 7305.888196 28438.41465 13138.93295 12794.40672 14563.67275 17357.5525 6262.853618 2.561716236 2.757040965 4.681418376 1.166543024 4.540807815 2.097914744 2.042903682 2.32540526 2.771508574 1 12.61260444 -9.242846668 0.245364543 0.203459303 3.261354754 0.241498138 1.008423498 12.39788966 1.07163842 10.22288339 1.919359776 5.72E-10 9.242846668 3.05789545 TEFLHSQNSLS(ph)PR ddPTM_HeLa_A485_30min_R1 4 TEFLHSQNSLSPR 13 0 Q96FS4;F6RY50 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 TEFLHSQNSLS(1)PR;TEFLHSQNS(0.009)LS(0.991)PR;TEFLHSQNS(0.001)LS(0.999)PR;TEFLHSQNSLS(1)PR ;;; 176.49 7.75E-13 1038770000 359105 491512 430052 425409 597616 420010 566724 630546 423741 631411 TRUE FALSE FALSE 438986.6684 548990.0528 589146.1308 448648.0165 538115.2527 442001.0741 445638.7877 475903.6048 508781.9319 474011.858 0.926109043 1.158177889 1.242893233 0.946491125 1.135235846 0.93246839 0.940142699 1.003990927 1.073352751 1 18.85456362 -6.259052766 24.99768129 0.987124871 1.087460203 0.187449256 0.095094453 356.6435192 3735542.349 0.032557583 0.031121724 5.51E-07 6.259052766 0.100335332 TEFLHSQNSLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 TEFLHSQNSLSPR 13 0 Q96FS4;F6RY50 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 TEFLHSQNS(0.048)LS(0.952)PR;TEFLHSQNS(0.207)LS(0.793)PR;TEFLHSQNSLS(1)PR;TEFLHSQNSLS(0.999)PR ;;; 186.77 3.19E-15 151450000 463352 455048 321873 202714 511390 422736 616932 573760 377806 541977 TRUE FALSE FALSE 430873.4176 418988.3392 446510.8457 471928.4366 447246.6977 370583.1304 462569.0884 443127.3731 410554.5283 406262.4315 1.060579035 1.031324353 1.099069988 1.161634451 1.10088126 0.912176715 1.13859676 1.090741695 1.010564838 1 18.63205243 TEFLSFMNTELAAFTK ddPTM_HeLa_A485_30min_R1 1 TEFLSFMNTELAAFTK 16 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 121.76 6.64E-05 2119500 2608.1 1453.5 1922.9 2481.4 3391.3 3394.3 4164.8 4421.6 2273 5217.2 FALSE FALSE TRUE 3188.262847 1623.474181 2634.260729 2616.952599 3053.650264 3572.020299 3274.956457 3337.195667 2729.170251 3916.648055 0.814028425 0.414506016 0.672580403 0.668161285 0.779659091 0.912009517 0.836163069 0.852054006 0.696812737 1 11.93540378 -5.759647375 2.16015761 0.849347942 0.615559463 0.437287821 0.115607259 0.279611605 2.681019299 0.037380844 0.048150733 1.74E-06 5.759647375 -0.233788479 TEFS(ph)PAAFEQEQLGSPQVR ddPTM_HeLa_A485_30min_R1 1 TEFSPAAFEQEQLGSPQVR 19 0 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 TEFS(1)PAAFEQEQLGSPQVR 270.94 4.35E-61 61033000 11716 18529 18285 17073 26900 19786 22718 15766 17808 16405 TRUE FALSE FALSE 14322.18378 20695.80537 25049.3824 18005.65476 24221.74155 20821.96437 17864.11371 11899.36378 21381.90226 12315.53541 1.162936348 1.680463307 2.033966171 1.462027769 1.966763177 1.690707198 1.450534882 0.966207589 1.736173178 1 13.58819173 -6.940195394 4.160782033 1.252886348 1.685865187 0.290864814 0.301031409 0.26850753 9.464936815 0.131208014 0.084191584 1.15E-07 6.940195394 0.432978839 TEFS(ph)PAAFEQEQLGSPQVR ddPTM_HeLa_A486_30min_R1 2 TEFSPAAFEQEQLGSPQVR 19 0 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 T(0.137)EFS(0.863)PAAFEQEQLGSPQVR;T(0.014)EFS(0.986)PAAFEQEQLGSPQVR ; 107.75 1.88E-05 38074000 41994 41081 37321 13741.1 40288 31769 45267 55908 33891 38690 TRUE FALSE FALSE 39050.43746 37825.59195 51772.69069 31989.97524 35234.70337 27849.66378 33940.71781 43178.96886 36828.69917 29001.77217 1.346484526 1.304251055 1.785156107 1.103035189 1.214915529 0.960274552 1.170298064 1.488838979 1.269877542 1 14.82385344 -5.308609162 24.99954642 1.185668574 1.461193699 0.367630075 0.183013572 480.3867762 254599.5028 0.053658821 0.079589098 4.91E-06 5.308609162 0.275525126 RRLS(ph)S(ph)LRAST(ph)SK ddPTM_HeLa_A485_30min_R1 2 RRLSSLRASTSK 12 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RRLS(0.995)S(0.963)LRAS(0.202)T(0.67)S(0.17)K;RRLS(1)S(1)LRAS(0.441)T(0.49)S(0.069)K ; 66.068 0.0095812 2313580000 2334140 2436550 1204220 1651510 1649040 1597590 2060910 2029750 954590 1740420 TRUE FALSE FALSE 2853361.39 2721483.327 1649711.09 1741727.809 1484855.787 1681237.342 1620579.742 1531950.63 1146167.457 1306565.324 2.183864318 2.082929401 1.262631925 1.333058346 1.136457367 1.28676103 1.240335797 1.172502133 0.877237009 1 20.31734783 -4.762991565 3.761430524 1.172894902 2.173542284 0.903215996 0.127475523 0.058846325 1.787934425 0.034545705 0.092119476 1.73E-05 4.762991565 1.000647382 up TEHQVPSSVSSPDDAMVS(ph)PLKPAPK ddPTM_HeLa_A485_30min_R1 1 TEHQVPSSVSSPDDAMVSPLKPAPK 25 1 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 TEHQVPSSVS(0.002)S(0.001)PDDAMVS(0.997)PLKPAPK 90.384 0.0019704 178440000 119440 70988 45414 151670 134910 90851 169010 185530 89136 221950 TRUE FALSE FALSE 146009.0159 79289.42909 62214.52843 159955.3481 121477.8867 95607.81788 132899.6328 140028.4766 107024.7776 166621.9497 0.876289206 0.47586425 0.373387351 0.959989655 0.729062929 0.573800859 0.797611798 0.84039634 0.642321002 1 17.34621894 -13.99999429 0.125199824 2.043501948 0.5513492 0.221953043 0.173680594 222.7743051 1.780545033 58.15972506 1.513499064 1.00E-14 13.99999429 -1.492152748 TEHQVPSSVSSPDDAMVS(ph)PLKPAPK ddPTM_HeLa_A486_30min_R1 2 TEHQVPSSVSSPDDAMVSPLKPAPK 25 1 A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0X1KG75 COBLL1 Cordon-bleu protein-like 1 1 0 TEHQVPSSVSSPDDAMVS(1)PLKPAPK;TEHQVPSSVSSPDDAMVS(1)PLKPAPK ; 193.75 3.92E-21 580430000 575920 447280 220855 169975 391510 582370 790300 722060 369220 689650 TRUE FALSE FALSE 535550.9821 411835.9038 306375.9707 395710.3901 342403.1651 510523.1105 592558.5811 557662.7005 401224.2869 516957.1511 1.035967838 0.796653848 0.592652544 0.765460714 0.662343415 0.987554016 1.146243126 1.078740664 0.776126776 1 18.97968518 -6.340576145 6.790001757 1.013885749 0.762262351 0.397103916 0.139180198 0.25849291 18.79737097 0.050987098 0.04491237 4.56E-07 6.340576145 -0.251623398 TEIIILATR ddPTM_HeLa_A485_30min_R1 2 TEIIILATR 9 0 E9PPU1;H0YEU2;E9PL09;P23396;P23396-2;E9PQ96;E9PJH4;F2Z2S8;H0YF32;E9PK82;H0YCJ7 E9PPU1 RPS3 40S ribosomal protein S3 0 0 ; ; 106.36 0.011631 47841000 58166 74325 73030 70133 106639 60051 88880 88101 70405 103132 FALSE FALSE TRUE 71104.82603 83016.66221 100046.836 73964.1882 96021.64673 63195.1775 69890.06192 66494.09161 84534.63771 77423.0904 0.918393023 1.072246816 1.292209282 0.955324669 1.240219762 0.816231659 0.902703077 0.858840577 1.091853054 1 16.24047627 -6.268688144 24.96081824 0.923151801 1.097497858 0.286307048 0.127107529 699.0032422 2406982.859 0.043416214 0.039053405 5.39E-07 6.268688144 0.174346056 TEIKEEEDQPSTSATQS(ph)SPAPGQSK ddPTM_HeLa_A485_30min_R1 1 TEIKEEEDQPSTSATQSSPAPGQSK 25 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 TEIKEEEDQPSTS(0.001)AT(0.17)QS(0.815)S(0.015)PAPGQSK 212.39 2.38E-29 813880000 616270 346750 219050 1110400 533830 463390 813080 578970 378650 1209200 TRUE FALSE FALSE 753357.1354 387299.3962 300085.7104 1171058.34 480680.0108 487652.3839 639358.8157 436976.6997 454641.5818 907768.6937 0.829899886 0.426649871 0.330575082 1.290040457 0.529518163 0.537198944 0.704319085 0.481374499 0.500834172 1 19.79196521 -10.03991445 4.62589027 1.000011542 0.623261958 0.158504934 0.258747045 79637455.36 86421553.32 8963.66602 0.062426272 9.12E-11 10.03991445 -0.376749584 TEIKEEEDQPSTSATQS(ph)SPAPGQSK ddPTM_HeLa_A486_30min_R1 1 TEIKEEEDQPSTSATQSSPAPGQSK 25 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 TEIKEEEDQPSTSAT(0.017)QS(0.491)S(0.491)PAPGQS(0.001)K 87.659 0.0018723 1112200000 115530 98325 34083 62975 66671 134250 162600 146530 71843 192410 TRUE FALSE FALSE 107431.9436 90533.36891 47280.85037 146608.9826 58308.5015 117687.6 121915.7602 113168.3177 78070.40909 144229.2836 0.744869148 0.62770449 0.327817273 1.016499416 0.404276441 0.815975764 0.845291311 0.784641752 0.541293745 1 17.13800459 TEIMS(ph)PLYQDEAPK ddPTM_HeLa_A485_30min_R1 4 TEIMSPLYQDEAPK 14 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 TEIMS(1)PLYQDEAPK;TEIMS(1)PLYQDEAPK;TEIMS(1)PLYQDEAPK;TEIMS(1)PLYQDEAPK ;;; 273.49 7.61E-49 537776000 563970 353554 254538 748570 528728 378221 561049 465158 351513 950690 TRUE FALSE FALSE 689423.1808 394899.0648 348702.1984 789462.4836 476085.9838 398024.0667 441176.2978 351077.2712 422058.4348 713700.4792 0.965983912 0.553312035 0.488583388 1.106153781 0.667066925 0.557690626 0.618153288 0.491911217 0.591366332 1 19.44495922 -4.24794517 23.75142232 0.661008504 0.96598432 0.156892967 0.200097552 2088.199166 3675352.451 0.049889601 0.891645222 5.65E-05 4.24794517 0.304975816 TEIMS(ph)PLYQDEAPK ddPTM_HeLa_A486_30min_R1 3 TEIMSPLYQDEAPK 14 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 TEIMS(1)PLYQDEAPK;TEIMS(1)PLYQDEAPK;TEIMS(1)PLYQDEAPK ;; 345.69 7.54E-95 498049000 626179 618057 300904 311501 510007 735526 849493 713535 516460 1013902 TRUE FALSE FALSE 582287.0857 569079.9124 417422.0873 725190.0704 446037.1664 644784.2804 636940.8664 551078.6569 561227.1686 760014.3398 0.766152762 0.74877523 0.549229226 0.954179457 0.586879935 0.848384361 0.838064275 0.725089815 0.738442868 1 19.53566711 -14 0.250001686 2.503283588 0.728463359 0.307028901 0.112625441 221.418435 2.197657078 170.1638093 0.15644177 1.00E-14 14 -1.774820229 TEIQDPYS(ph)WGGKSK ddPTM_HeLa_A485_30min_R1 1 TEIQDPYSWGGKSK 14 1 Q53TS8-4 Q53TS8-4 ALS2CR11 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein 1 0 TEIQDPY(0.004)S(0.996)WGGKS(0.001)K 83.751 0.0017166 111400000 127190 106120 82224 123830 119980 95970 117160 95532 101970 159740 TRUE FALSE FALSE 155482.9767 118529.8109 112642.0792 130594.5193 108034.3699 100994.8408 92127.80889 72102.62721 122434.4437 119919.7578 1.296558462 0.988409359 0.939312097 1.08901587 0.900888827 0.842186831 0.768245455 0.601257279 1.020969738 1 16.87170985 -5.929686542 1.949465187 0.813884463 1.068857323 0.36022104 0.14240318 0.351299275 2.71966419 0.051166317 0.059063225 1.18E-06 5.929686542 0.254972861 TEKPERPS(ph)R ddPTM_HeLa_A485_30min_R1 4 TEKPERPSR 9 2 Q02241;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 TEKPERPS(1)R;TEKPERPS(1)R;TEKPERPS(1)R;TEKPERPS(1)R ;;; 89.46 0.0025862 1536630000 1635740 1592990 1139840 2037910 1913230 1700370 2290500 2633000 1471620 3307970 TRUE FALSE FALSE 1999604.72 1779276.323 1561514.249 2149235.863 1722742.103 1789398.744 1801115.963 1987252.622 1766960.636 2483353.958 0.805203267 0.71648116 0.628792462 0.865456918 0.693715891 0.720557268 0.725275572 0.800229309 0.711521863 1 21.24385848 -13.99996087 0.459041505 7.26821859 0.736867681 0.599219851 0.063479601 1001.262303 5.616093545 6392.67012 0.032519358 1.00E-14 13.99996087 -6.531350909 TEKPERPS(ph)R ddPTM_HeLa_A486_30min_R1 4 TEKPERPSR 9 2 Q02241;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 TEKPERPS(1)R;TEKPERPS(1)R;TEKPERPS(1)R;TEKPERPS(1)R ;;; 84.297 0.0037642 1108020000 1751440 1714170 917300 774780 1493880 1775020 2155460 2024490 1481110 2205020 TRUE FALSE FALSE 1628673.1 1578332.926 1272503.126 1803726.995 1306503.641 1556036.079 1616141.11 1563557.821 1609493.807 1652868.64 0.985361487 0.954905241 0.769875534 1.091270626 0.790446143 0.941415453 0.977779523 0.945966173 0.973757847 1 20.65654064 -6.524051357 24.80647653 0.968405145 0.916174511 0.082418823 0.087048746 104.475204 2210028.15 0.031680806 0.02474721 2.99E-07 6.524051357 -0.052230634 TEKPPES(ph)DDEEMKEAAGSLLHLAGIR ddPTM_HeLa_A485_30min_R1 1 TEKPPESDDEEMKEAAGSLLHLAGIR 26 2 O00409-2;O00409 O00409-2 FOXN3 Forkhead box protein N3 1 0 T(0.045)EKPPES(0.955)DDEEMKEAAGSLLHLAGIR 82.492 0.0024519 15402000 20697 15012 15004 45410 24064 23354 36980 30017 16114 55896 TRUE FALSE FALSE 25300.97625 16767.52281 20554.60397 47890.63332 21668.10367 24576.77933 29078.9209 22655.28369 19347.93199 41962.15589 0.602947482 0.399586781 0.4898367 1.141281526 0.516372508 0.585689148 0.692979669 0.539897992 0.461080504 1 15.35680118 -11.19032031 2.373953712 2.111048947 0.607490037 0.269179723 0.195987416 8977459.922 2334830.898 53436050.14 0.05040158 6.45E-12 11.19032031 -1.50355891 TEKS(ph)PSLR ddPTM_HeLa_A486_30min_R1 2 TEKSPSLR 8 1 Q1ED39 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 T(0.151)EKS(0.846)PS(0.003)LR;T(0.249)EKS(0.748)PS(0.002)LR ; 76.228 0.0025259 0 139786 155784 97869 70280 155814 199710 199501 189681 140006 222099 TRUE FALSE FALSE 129987.7233 143439.1085 135766.4978 163615.3918 136270.3552 175071.8107 149583.7397 146494.777 152141.8328 166483.9648 0.780782242 0.861579124 0.81549294 0.982769674 0.818519402 1.051583622 0.89848737 0.879933255 0.913852773 1 17.3450237 -4.946456926 1.195069747 0.930927336 0.792370949 0.359060408 0.066931155 0.723237463 1.744328502 0.021561029 0.093491582 1.13E-05 4.946456926 -0.138556387 TELGSQT(ph)PESSR ddPTM_HeLa_A485_30min_R1 1 TELGSQTPESSR 12 0 H0YID1;F8VUX5;H0YIQ8;F8VXI8;F8VX10;Q9H9L4-4;Q9H9L4 H0YID1 KANSL2 KAT8 regulatory NSL complex subunit 2 1 0 TELGS(0.247)QT(0.753)PESSR 121.48 0.00068091 0 121190 155210 152530 142870 206930 143470 180110 203820 119890 198480 TRUE FALSE FALSE 148148.2974 173360.4594 208957.1943 150674.6263 186327.3226 150981.8674 141628.0271 153832.8254 143950.8233 149002.5888 0.994266601 1.163472801 1.402372912 1.011221534 1.250497217 1.013283518 0.950507158 1.032417133 0.966096123 1 17.18497787 -6.372494861 6.159854663 0.98925906 1.168596618 0.380445433 0.109879665 0.258250375 12.46878068 0.038877828 0.034157064 4.24E-07 6.372494861 0.179337558 TELTAATGER ddPTM_HeLa_A485_30min_R1 1 TELTAATGER 10 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 0 0 76.17 0.035046 1071100000 295840 924630 1204000 59338 907630 570950 343140 395400 775000 113520 FALSE FALSE TRUE 361648.5874 1032757.435 1649409.703 62579.48469 817263.1703 600844.0591 269825.3358 298427.53 930535.3913 85221.55318 4.243628212 12.11850051 19.3543727 0.734315233 9.589864768 7.050376773 3.166163086 3.501784688 10.91901469 1 16.37893072 -5.277050979 24.97366044 5.424698069 11.92680153 0.30803528 4.634565249 977.0151973 1562915.472 1.296694335 1.930872325 5.28E-06 5.277050979 6.502103457 TEMDKS(ph)PFNS(ph)PSPQDSPR ddPTM_HeLa_A485_30min_R1 1 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 T(0.012)EMDKS(0.987)PFNS(0.642)PS(0.352)PQDS(0.006)PR 64.069 0.0011265 0 193170 158670 115960 243600 234170 197070 283470 277370 162940 361160 TRUE FALSE FALSE 236140.0001 177225.0763 158858.4295 256907.2512 210855.2126 207388.2805 222904.3188 209344.5726 195640.5634 271129.4587 0.870949255 0.653654815 0.585913572 0.947544588 0.777692006 0.764905007 0.822132423 0.77212035 0.721576196 1 18.04862235 -11.24231095 2.133651565 1.766696742 0.766865506 0.338306942 0.097104508 5712298.002 912809.5224 21129048.85 0.02550135 5.72E-12 11.24231095 -0.999831236 TEMDKS(ph)PFNSPS(ph)PQDSPR ddPTM_HeLa_A485_30min_R1 4 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 T(0.002)EMDKS(0.998)PFNS(0.166)PS(0.835)PQDSPR;TEMDKS(1)PFNS(0.001)PS(0.999)PQDSPR;TEMDKS(1)PFNS(0.004)PS(0.996)PQDSPR;TEMDKS(1)PFNS(0.011)PS(0.989)PQDSPR ;;; 233.26 1.24E-35 5210160000 1394850 1234649.2 881630 2306956.1 1720650 1545390 2551150 2373226.9 1348630 3274636 TRUE FALSE FALSE 1705129.57 1379030.684 1207781.625 2432979.27 1549336.044 1626304.231 2006075.962 1791189.282 1619287.671 2458329.51 0.693613107 0.560962506 0.491301764 0.989688022 0.630239371 0.661548512 0.816032169 0.728620502 0.658694314 1 21.22924687 -14 0.144947437 2.043008859 0.59362062 0.348042005 0.12864862 160.2621697 1.400118225 48.4766453 0.73190537 1.00E-14 14 -1.44938824 TEMDKS(ph)PFNSPS(ph)PQDSPR ddPTM_HeLa_A486_30min_R1 5 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 TEMDKS(1)PFNS(0.001)PS(0.999)PQDSPR;TEMDKS(1)PFNS(0.004)PS(0.996)PQDSPR;TEMDKS(1)PFNS(0.023)PS(0.976)PQDSPR;TEMDKS(1)PFNS(0.098)PS(0.894)PQDS(0.008)PR;TEMDKS(1)PFNS(0.289)PS(0.711)PQDSPR ;;;; 223.67 1.86E-34 2411790000 2406500 2404170 1222240 1433450 2334080 2798620 3733620 3395470 2101000 4232520 TRUE FALSE FALSE 2237816.777 2213654.813 1695524.061 3337144.043 2041317.922 2453354.719 2799428.786 2622395.604 2283116.372 3172669.443 0.705341927 0.697726269 0.534415605 1.051841077 0.643407061 0.77327776 0.882357534 0.826558093 0.719619996 1 21.59726579 -13.39067375 0.03485962 2.143494126 3.76E-06 0.268954088 0.129619969 1348.826768 3.892511135 190.8271968 73.59468766 4.07E-14 13.39067375 -2.143490366 TEMDKS(ph)PFNSPSPQDSPR ddPTM_HeLa_A485_30min_R1 6 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TEMDKS(1)PFNSPSPQDSPR;TEMDKS(1)PFNSPSPQDSPR;TEMDKS(1)PFNSPSPQDSPR;TEMDKS(1)PFNSPSPQDSPR;T(0.074)EMDKS(0.889)PFNS(0.021)PS(0.016)PQDSPR;T(0.001)EMDKS(0.998)PFNSPS(0.001)PQDSPR ;;;;; 249.32 3.19E-46 3214490000 1557930 1395100 989350 3127180 1914870 1686720 3015230 2630060 1401650 4214920 TRUE FALSE FALSE 1904486.154 1558244.809 1355351.735 3298009.925 1724218.819 1775034.051 2371001.478 1985033.661 1682948.298 3164218.014 0.601882091 0.492458106 0.428337027 1.042282773 0.544911511 0.560970844 0.749316725 0.62733783 0.531868629 1 21.59341757 -11.1893062 2.302675191 2.028636995 0.623050335 0.328640458 0.162913098 23720666.86 5194070.277 127042448.4 0.041696706 6.47E-12 11.1893062 -1.40558666 TEMDKS(ph)PFNSPSPQDSPR ddPTM_HeLa_A486_30min_R1 5 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TEMDKS(1)PFNSPSPQDSPR;TEMDKS(1)PFNSPSPQDSPR;TEMDKS(0.999)PFNS(0.001)PSPQDSPR;TEMDKS(1)PFNSPSPQDSPR;T(0.001)EMDKS(0.999)PFNSPSPQDSPR ;;;; 218.44 1.24E-34 3719610000 1385110 1348830 764250 738271 1318600 1542360 2072910 1832600 1142120 2128400 TRUE FALSE FALSE 1288020.942 1241943.798 1060188.067 1718732.198 1153208.893 1352079.305 1554245.993 1415356.985 1241119.881 1595434.786 0.807316571 0.778435953 0.664513571 1.077281386 0.722817944 0.84746761 0.974183342 0.887129325 0.777919531 1 20.60551821 -1.000000486 0.038528547 1.381462958 5.57E-11 0.185028563 0.111863779 1423.52333 4.190455447 42.11721217 130.9184 0.099999888 1.000000486 -1.381462958 TEMDKSPFNS(ph)PSPQDSPR ddPTM_HeLa_A485_30min_R1 1 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TEMDKSPFNS(0.573)PS(0.427)PQDSPR 100.64 0.00041946 531100000 266590 300250 212240 346220 394380 328890 488420 507890 279640 475550 TRUE FALSE FALSE 325892.0258 335361.6257 290756.408 365133.1219 355114.1424 346110.1718 384065.077 383329.1812 335761.183 357004.1368 0.912852239 0.939377422 0.814434282 1.022770002 0.994705959 0.969485045 1.075800074 1.073738765 0.940496617 1 18.44558127 -5.285134905 24.86137657 1.014363312 0.893936923 0.563078895 0.049170071 519.771789 545344.2196 0.014034986 0.020831224 5.19E-06 5.285134905 -0.120426389 TEMDKSPFNSPS(ph)PQDS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 TEMDKSPFNS(0.003)PS(0.997)PQDS(1)PR 119.83 7.19E-07 0 106660 111180 81716 126510 137490 128510 157130 194020 73689 156320 TRUE FALSE FALSE 130386.149 124181.5339 111946.1489 133420.921 123801.0128 135238.5849 123557.8919 146436.2908 88477.70638 117352.3009 1.111065979 1.058194283 0.953932288 1.136926332 1.05495173 1.152415282 1.052880011 1.24783485 0.753949482 1 16.8404866 -7.767077848 24.99992578 0.876974789 1.090463407 0.477273191 0.091549587 122.5306923 543250.4215 0.075885256 0.021742061 1.71E-08 7.767077848 0.213488618 TEMDKSPFNSPS(ph)PQDS(ph)PR ddPTM_HeLa_A486_30min_R1 1 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 2 0 TEMDKS(0.001)PFNS(0.055)PS(0.953)PQDS(0.991)PR 63.63 0.0012777 0 116880 105390 46050 46882 116740 111800 136170 146470 85286 157370 TRUE FALSE FALSE 108687.3156 97038.51258 63881.79326 109143.6653 102097.3806 98007.2527 102098.8257 113121.9784 92678.65915 117963.5277 0.921363727 0.822614536 0.541538512 0.925232294 0.865499554 0.830826736 0.865511805 0.958957236 0.785655202 1 16.84798135 TEMDKSPFNSPS(ph)PQDSPR ddPTM_HeLa_A485_30min_R1 4 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TEMDKSPFNS(0.025)PS(0.975)PQDSPR;TEMDKSPFNS(0.023)PS(0.9)PQDS(0.077)PR;TEMDKSPFNS(0.001)PS(0.999)PQDSPR;TEMDKS(0.001)PFNS(0.039)PS(0.958)PQDS(0.002)PR ;;; 286.05 5.42E-70 3418820000 1821646 1972379 1390261 2346456 2481790 2163561 3361351 3250927 1655783 3157273 TRUE FALSE FALSE 2226864.868 2203031.567 1904576.397 2474636.95 2234694.274 2276841.708 2643170.899 2453632.056 1988083.46 2370222.946 0.939517049 0.92946175 0.803543144 1.044052397 0.942820285 0.96060234 1.11515708 1.035190407 0.838774877 1 21.17659134 -5.276830973 24.97950765 0.994315094 0.894702748 0.264102305 0.076346127 1081.293721 1754863.897 0.02192818 0.032659985 5.29E-06 5.276830973 -0.099612346 TEMDKSPFNSPS(ph)PQDSPR ddPTM_HeLa_A486_30min_R1 5 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TEMDKSPFNS(0.005)PS(0.995)PQDSPR;TEMDKSPFNS(0.025)PS(0.975)PQDSPR;TEMDKSPFNS(0.008)PS(0.992)PQDSPR;TEMDKSPFNS(0.027)PS(0.972)PQDS(0.001)PR;TEMDKSPFNS(0.102)PS(0.898)PQDSPR ;;;; 274.3 2.41E-69 3886360000 3496600 2879360 1551798 1276909 2899310 3206460 3879850 3682610 2319210 4173980 TRUE FALSE FALSE 3251506.396 2651189.027 2152695.744 2972708.683 2535651.505 2810879.566 2909070.493 2844160.094 2520240.99 3128788.24 1.039222263 0.847353296 0.688028585 0.950115014 0.810426053 0.898392397 0.92977545 0.909029271 0.805500659 1 21.57717259 -6.490527355 23.59989044 0.905008111 0.859987538 0.042083784 0.095910728 1211.593882 883842.196 0.033849697 0.029819287 3.23E-07 6.490527355 -0.045020573 TEMDKSPFNSPSPQDS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TEMDKSPFNSPSPQDSPR 18 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TEMDKSPFNSPS(0.018)PQDS(0.982)PR 225.26 6.93E-35 2077800000 436410 452350 281030 422960 482210 452340 587690 545540 305230 534070 TRUE FALSE FALSE 533487.8989 505248.3976 384994.6916 446065.2338 434199.4793 476023.8229 462125.2305 411745.4596 366486.8613 400936.1778 1.330605539 1.260171632 0.960239342 1.112559201 1.082964081 1.187280792 1.152615444 1.026960106 0.914077805 1 18.61301308 -4.622537797 5.884376578 1.067405165 1.313338706 0.586811259 0.081060725 0.141080865 6.811725911 0.021924125 0.060068727 2.38E-05 4.622537797 0.24593354 TENGTCPS(ph)PPQPLSPAAALGSGS(ph)AAAVPK ddPTM_HeLa_A486_30min_R1 1 TENGTCPSPPQPLSPAAALGSGSAAAVPK 29 0 Q12948 Q12948 FOXC1 Forkhead box protein C1 2 0 T(0.057)ENGT(0.058)CPS(0.834)PPQPLS(0.153)PAAALGS(0.414)GS(0.485)AAAVPK 51.586 0.03059 81608000 34031 41235 20675 19021 40398 41012 50855 45608 29894 52414 TRUE FALSE FALSE 31645.60264 37967.38842 28680.9137 44281.84927 35330.90614 35952.35642 38130.54111 35224.05402 32485.23599 39289.19324 0.805453104 0.966357038 0.729994976 1.127074537 0.899252523 0.915069856 0.970509648 0.896532891 0.826823697 1 15.26184492 -5.229035791 24.99918692 0.941131547 0.8471773 0.234909904 0.092772954 1151.609371 888458.6087 0.024433057 0.042314879 5.90E-06 5.229035791 -0.093954247 TENVFVDEPLIHATTYIPLMDNADS(ph)SPVVDKR ddPTM_HeLa_A485_30min_R1 2 TENVFVDEPLIHATTYIPLMDNADSSPVVDKR 32 1 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 TENVFVDEPLIHATTYIPLMDNADS(0.5)S(0.5)PVVDKR;TENVFVDEPLIHATTYIPLMDNADS(0.5)S(0.5)PVVDKR ; 263.97 6.10E-64 192603000 76175 70566 39850 58806 71011 56574 86154 101561 62728 156983 TRUE FALSE FALSE 93119.86595 78818.07986 54592.1733 62018.42288 63940.89551 59536.12716 67746.49409 76653.00551 75316.93422 117850.0272 0.79015566 0.668799845 0.463234287 0.526248694 0.542561568 0.505185519 0.574853445 0.650428408 0.639091361 1 16.84659257 -8.562400987 1.059185779 1.00064393 0.576446822 0.656077899 0.088751397 1.488726805 2.221255813 0.093514429 0.028925399 2.74E-09 8.562400987 -0.424197108 TENVFVDEPLIHATTYIPLMDNADS(ph)SPVVDKR ddPTM_HeLa_A486_30min_R1 1 TENVFVDEPLIHATTYIPLMDNADSSPVVDKR 32 1 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 TENVFVDEPLIHATTYIPLMDNADS(0.5)S(0.5)PVVDKR 216.54 6.81E-39 81758000 39025 36297 22290 3022.3 37662 28946 35204 26782 34563 22952 TRUE FALSE FALSE 36289.54903 33420.69353 30921.28495 7036.067139 32938.08078 25374.93682 26395.58685 20684.32325 37558.94867 17204.66981 2.10928483 1.942536178 1.797261168 0.408962637 1.914484913 1.474886592 1.534210604 1.202250521 2.183067103 1 14.07051258 -5.012758011 24.88661681 1.403293996 1.986907806 0.247862902 0.458293712 799.3163251 1559207.931 0.11906355 0.220192857 9.71E-06 5.012758011 0.58361381 TEPAAEAEAASGPSES(ph)PSPPAAEELPGSHAEPPVPAQGEAPGEQAR ddPTM_HeLa_A485_30min_R1 2 TEPAAEAEAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR 46 0 P55884-2;P55884 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 TEPAAEAEAASGPSES(0.998)PS(0.002)PPAAEELPGSHAEPPVPAQGEAPGEQAR;TEPAAEAEAASGPSES(0.999)PS(0.001)PPAAEELPGSHAEPPVPAQGEAPGEQAR ; 349.4 1.18E-151 1171880000 145558 176780 169935 146904 225053 182351 234983 210454 152383 221314 TRUE FALSE FALSE 177936.8749 197452.8832 232801.0281 154928.9935 202645.9331 191898.6164 184776.9624 158839.8265 182964.8704 166144.4928 1.070976666 1.188440736 1.401196177 0.93249551 1.219696962 1.155010396 1.112146177 0.956034256 1.101239453 1 17.34207895 -7.030548373 4.127415644 1.021446716 1.164465766 0.23099158 0.115604133 0.327191997 12.43309631 0.054986473 0.032290068 9.32E-08 7.030548373 0.14301905 TEPAAEAEAASGPSESPS(ph)PPAAEELPGSHAEPPVPAQGEAPGEQAR ddPTM_HeLa_A486_30min_R1 1 TEPAAEAEAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR 46 0 P55884-2;P55884 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 TEPAAEAEAASGPS(0.027)ES(0.169)PS(0.804)PPAAEELPGSHAEPPVPAQGEAPGEQAR 145.15 8.45E-12 738640000 23207 26111 16623 6275.6 29608 31841 31676 38171 27443 25963 TRUE FALSE FALSE 21580.30914 24041.86927 23059.87078 14609.91395 25894.28856 27912.78116 23750.32977 29480.29657 29821.78134 19461.69581 1.108860674 1.235342978 1.184884966 0.750700972 1.330525809 1.434241981 1.220362809 1.5147856 1.532332107 1 14.24834981 -5.966761823 24.99508403 1.366949336 1.083801294 0.32290941 0.188319233 214.5460103 161337.5747 0.057738865 0.065469367 1.08E-06 5.966761823 -0.283148043 TEPS(ph)SPLSDPSDIIR ddPTM_HeLa_A485_30min_R1 1 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 TEPS(0.553)S(0.441)PLS(0.006)DPSDIIR 106.13 0.00030082 169460000 95767 95019 93162 109440 117400 88331 109560 96286 93720 172370 TRUE FALSE FALSE 117070.0388 106130.6455 127626.5006 115418.4301 105711.2438 92955.87457 86151.61098 72671.70753 112528.7443 129401.3312 0.904705057 0.820166566 0.986284294 0.891941597 0.816925473 0.71835331 0.66577067 0.561599381 0.869610407 1 16.98149293 -5.98788865 2.822178976 0.730240145 0.901188981 0.208595219 0.117898005 0.333344024 5.401117482 0.03922411 0.042978186 1.03E-06 5.98788865 0.170948836 TEPS(ph)SPLSDPSDIIR ddPTM_HeLa_A486_30min_R1 2 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 TEPS(0.775)S(0.225)PLSDPSDIIR;TEPS(0.598)S(0.402)PLSDPSDIIR ; 151.99 4.41E-08 287160000 542830 629530 435480 196900 517940 587620 659440 578460 476600 659540 TRUE FALSE FALSE 504780.4202 579643.7501 604109.5186 458393.1508 452975.1356 515125.4189 494441.1372 446757.2857 517912.0717 494386.8911 1.021023068 1.172449676 1.221936765 0.927195197 0.916236138 1.041947973 1.000109724 0.903659247 1.047584556 1 18.91528096 -5.268444769 24.99728085 0.973839647 1.141867822 0.556031091 0.066197014 379.4219952 1353887.689 0.01867495 0.028378728 5.39E-06 5.268444769 0.168028175 TEPSS(ph)PLSDPSDIIR ddPTM_HeLa_A485_30min_R1 3 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 TEPS(0.133)S(0.867)PLS(0.001)DPSDIIR;TEPS(0.139)S(0.858)PLS(0.002)DPSDIIR;TEPS(0.149)S(0.851)PLSDPSDIIR ;; 172.57 2.43E-12 331358000 346330 365810 348460 431160 490140 298960 386260 351930 362310 628160 TRUE FALSE FALSE 423369.9137 408588.2974 477369.8546 454713.179 441339.9406 314613.0833 303732.3955 265618.6157 435022.2937 471571.2724 0.897785634 0.866440178 1.012296301 0.964251229 0.935892338 0.667159137 0.644085875 0.563262928 0.922495324 1 18.84711631 -6.250871106 23.53325193 0.724897414 0.937388073 0.303781859 0.127927074 330.7365942 736478.2211 0.041374996 0.040902062 5.61E-07 6.250871106 0.212490659 TEPSS(ph)PLSDPSDIIR ddPTM_HeLa_A486_30min_R1 2 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 TEPS(0.026)S(0.973)PLS(0.001)DPSDIIR;TEPS(0.003)S(0.997)PLSDPSDIIR ; 270.79 3.25E-52 304020000 581260 669510 433510 220378 600940 636810 716040 636360 519100 749550 TRUE FALSE FALSE 540516.6756 616455.5893 601376.6818 513051.1213 525564.5017 558246.8568 536879.2185 491474.7196 564096.006 561857.8012 0.962016856 1.097173676 1.070336089 0.913133395 0.935404831 0.993573206 0.955542875 0.874731504 1.003983579 1 19.09984552 -5.256256705 24.9182998 0.949515024 1.048575359 0.399264216 0.049935973 375.2108801 1804008.014 0.013362635 0.022276081 5.54E-06 5.256256705 0.099060335 TEPTS(ph)PTPSAFK ddPTM_HeLa_A485_30min_R1 1 TEPTSPTPSAFK 12 0 Q86XN7-2;Q86XN7 Q86XN7-2 PROSER1 Proline and serine-rich protein 1 1 0 TEPT(0.005)S(0.375)PT(0.245)PS(0.375)AFK 82.362 0.003354 0 436940 325140 327150 617330 521870 275660 533600 418810 350250 694090 TRUE FALSE FALSE 534135.7956 363162.2947 448176.3988 651053.1747 469910.7904 290093.1313 419592.0009 316096.1908 420541.9623 521066.1368 1.025082533 0.696960077 0.86011423 1.249463607 0.901825617 0.556729964 0.805256706 0.606633532 0.807079817 1 18.99110697 -6.022027097 24.61978578 0.733196962 0.950201533 0.236076507 0.172164444 885.7316283 989984.9757 0.056843492 0.057341605 9.51E-07 6.022027097 0.217004571 TEPTS(ph)PTPSAFK ddPTM_HeLa_A486_30min_R1 2 TEPTSPTPSAFK 12 0 Q86XN7-2;Q86XN7 Q86XN7-2 PROSER1 Proline and serine-rich protein 1 1 0 TEPT(0.008)S(0.488)PT(0.488)PS(0.015)AFK;TEPT(0.003)S(0.996)PT(0.001)PSAFK ; 140.45 2.77E-06 543750000 1731050 1850480 976910 765990 1617910 2217590 2495980 2247290 1527550 2393840 TRUE FALSE FALSE 1609712.334 1703841.225 1355195.715 1783263.431 1414976.641 1944006.293 1871459.404 1735631.125 1659959.264 1794406.883 0.897072091 0.949528918 0.755233235 0.993789897 0.788548381 1.083369837 1.042940385 0.967245022 0.925074062 1 20.77507563 -6.265060371 24.99981902 1.004129581 0.880614979 0.411612067 0.075787847 334.9752955 2312705.525 0.025647313 0.023509489 5.43E-07 6.265060371 -0.123514601 TEPTS(ph)PTPSAFKGPSHSGNPSHGTLGLSGTLGR ddPTM_HeLa_A486_30min_R1 1 TEPTSPTPSAFKGPSHSGNPSHGTLGLSGTLGR 33 1 Q86XN7-2;Q86XN7 Q86XN7-2 PROSER1 Proline and serine-rich protein 1 1 0 T(0.21)EPT(0.227)S(0.305)PT(0.245)PS(0.003)AFKGPS(0.002)HS(0.002)GNPS(0.005)HGT(0.002)LGLSGTLGR 44.178 0.029891 266610000 107500 83335 49649 29540 110050 56373 86218 79071 78217 47586 TRUE FALSE FALSE 99964.80513 76731.2311 68874.42245 68770.61287 96246.50282 49418.27242 64645.34448 61068.25941 84996.91254 35670.15587 2.802477385 2.151132487 1.93086968 1.927959416 2.698236116 1.385423506 1.812308999 1.712026705 2.382857895 1 15.1224299 -7.825784201 0.085924913 6.39E-21 3.4849828 0.433473755 0.398485628 17.61625916 1.229649061 25.38221201 21.84156928 1.49E-08 7.825784201 3.4849828 TEQELPRPQS(ph)PSDLDS(ph)LDGR ddPTM_HeLa_A485_30min_R1 2 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 2 0 TEQELPRPQS(0.995)PS(0.005)DLDS(1)LDGR;TEQELPRPQS(0.998)PS(0.002)DLDS(1)LDGR ; 126.25 6.97E-07 171928000 264424 300720 304230 339890 427900 294200 406190 395430 304480 443710 TRUE FALSE FALSE 323244.2065 335886.5881 416777.3371 358457.3301 385296.7736 309603.8571 319404.1882 298450.1725 365586.3431 333101.2629 0.970408229 1.008361797 1.251203113 1.076121198 1.156695625 0.929458671 0.958880148 0.895974305 1.097523138 1 18.3456013 -6.267417504 24.95228761 0.9687727 1.095780889 0.305065191 0.087240166 590.1111167 2463077.202 0.031002426 0.028064293 5.40E-07 6.267417504 0.127008189 TEQELPRPQS(ph)PSDLDS(ph)LDGR ddPTM_HeLa_A486_30min_R1 1 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 2 0 TEQELPRPQS(0.995)PS(0.005)DLDS(1)LDGR 109.41 3.22E-05 170140000 111390 108180 84519 38878 115960 118150 123360 114490 93563 114840 TRUE FALSE FALSE 103582.1362 99607.42282 117247.0203 90509.94879 101415.2155 103573.8543 92494.02323 88423.1263 101673.1162 86083.31652 1.203277713 1.157104847 1.362017927 1.05142265 1.178105347 1.203181504 1.074470954 1.027180758 1.18110129 1 16.39344604 -6.901571497 0.27858874 0.992703383 1.25720355 0.34683257 0.082833 2.258532032 0.546030653 0.153045074 0.220089585 1.25E-07 6.901571497 0.264500167 TEQELPRPQS(ph)PSDLDSLDGR ddPTM_HeLa_A485_30min_R1 3 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 1 0 TEQELPRPQS(0.987)PS(0.013)DLDSLDGR;TEQELPRPQS(0.997)PS(0.003)DLDSLDGR;T(0.001)EQELPRPQS(0.936)PS(0.062)DLDSLDGR ;; 287.48 1.52E-73 622620000 191479 262790 254078 242184 356470 242687 300495 350412 244705 325956 TRUE FALSE FALSE 234072.843 293521.0045 348072.0253 255413.8987 320978.5952 255393.7161 236291.7884 264472.9076 293815.0489 244701.168 0.956566104 1.199507983 1.422437123 1.043778829 1.311716645 1.043696351 0.965634085 1.080799531 1.20070963 1 17.90066146 -6.298257246 24.59526465 1.057434488 1.19265248 0.188003183 0.133383984 820.4141252 548054.681 0.047142777 0.041577253 5.03E-07 6.298257246 0.135217992 TEQELPRPQS(ph)PSDLDSLDGR ddPTM_HeLa_A486_30min_R1 2 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 1 0 TEQELPRPQS(0.991)PS(0.009)DLDSLDGR;TEQELPRPQS(0.96)PS(0.04)DLDSLDGR ; 206.69 8.61E-27 678180000 278900 349530 254218 126446 395610 330070 369500 376430 297680 378300 TRUE FALSE FALSE 259350.5502 321831.9698 352658.0178 294372.6782 345988.9049 289349.3193 277047.1918 290725.1064 323483.1421 283571.2177 0.914587003 1.134924667 1.243631214 1.038090821 1.220112915 1.020376192 0.976993343 1.025227838 1.140747445 1 18.11335158 TEQSLAGPKGS(ph)PSESEKER ddPTM_HeLa_A485_30min_R1 2 TEQSLAGPKGSPSESEKER 19 2 Q9NYD6;D6RAG4;V9GYH0 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 TEQSLAGPKGS(0.682)PS(0.317)ESEKER;TEQSLAGPKGS(0.955)PS(0.045)ESEKER ; 135.66 9.01E-07 642050000 600920 339740 222072 1116320 553060 556530 1002470 786280 399430 1571510 TRUE FALSE FALSE 734592.5809 379469.6377 304225.674 1177301.735 497995.4045 585669.0502 788284.0951 593443.5972 479591.9372 1179761.478 0.622661948 0.321649456 0.257870493 0.99791505 0.422115329 0.49643005 0.668172431 0.503019982 0.406516017 1 20.17006378 -10.6433138 2.631736484 1.055005434 0.52224191 0.344121906 0.198047464 31936878.79 27877317.98 11906857.9 0.050005276 2.27E-11 10.6433138 -0.532763524 TEQSLAGPKGS(ph)PSESEKER ddPTM_HeLa_A486_30min_R1 2 TEQSLAGPKGSPSESEKER 19 2 Q9NYD6;D6RAG4;V9GYH0 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 TEQSLAGPKGS(0.981)PS(0.019)ESEKER;TEQSLAGPKGS(0.894)PS(0.106)ESEKER ; 171.75 4.57E-13 596130000 723980 649130 244850 517260 552780 980020 1339040 1109000 562650 1468030 TRUE FALSE FALSE 673232.7406 597690.5747 339662.4773 1204207.421 483445.1779 859115.0965 1003998.029 856504.9093 611420.955 1100425.733 0.611792982 0.543144855 0.308664608 1.094310488 0.439325584 0.780711565 0.912372366 0.778339586 0.55562219 1 20.06963035 -5.243277819 24.9795301 0.774699794 0.493395243 0.33678867 0.195704809 1011.563524 1391309.295 0.051422611 0.088850175 5.71E-06 5.243277819 -0.281304551 TES(ph)PATAAETASEELDNR ddPTM_HeLa_A485_30min_R1 9 TESPATAAETASEELDNR 18 0 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4 1 0 TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;TES(0.999)PATAAETASEELDNR;T(0.002)ES(0.998)PATAAETASEELDNR;TES(0.991)PAT(0.008)AAETASEELDNR;TES(0.998)PAT(0.002)AAETASEELDNR;TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;T(0.011)ES(0.989)PATAAETASEELDNR ;;;;;;;; 408.27 9.58E-191 16967493000 406796 556206 442354 534721 668465 524300 728154 816828 481821 724965 TRUE FALSE FALSE 497286.3668 621249.4534 605999.1525 563931.4542 601910.2775 551751.5373 572577.9494 616499.6523 578518.0552 544244.5675 0.913718568 1.141489489 1.113468445 1.036172868 1.105955509 1.013793376 1.052060018 1.132762161 1.062974423 1 19.05389558 -4.24625019 24.50095755 1.075945037 0.913718412 0.511597073 0.046673261 1758.856775 2837068.293 0.01140705 0.260249084 5.67E-05 4.24625019 -0.162226625 TES(ph)PATAAETASEELDNR ddPTM_HeLa_A486_30min_R1 5 TESPATAAETASEELDNR 18 0 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4 1 0 TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;TES(1)PATAAETASEELDNR;T(0.04)ES(0.959)PAT(0.001)AAETASEELDNR ;;;; 467.06 2.88E-226 11024240000 459199 498336 295672 182143 488175 515749 567841 581924 395274 555893 TRUE FALSE FALSE 427011.5214 458846.0405 410164.1168 424038.109 426943.5394 452121.1321 425761.1758 449432.6085 429536.6686 416693.7745 1.024760982 1.101158857 0.984329841 1.017625256 1.024597835 1.085020127 1.021760347 1.07856809 1.030820941 1 18.66862802 TES(ph)PQGLPTVQR ddPTM_HeLa_A486_30min_R1 1 TESPQGLPTVQR 12 0 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 0 TES(1)PQGLPTVQR 90.229 0.0021562 101570000 162460 191120 138220 76729 241830 206410 229480 265800 164620 193690 TRUE FALSE FALSE 151072.3929 175974.9552 191742.4857 178628.9897 211497.4264 180945.2328 172061.6768 205283.1424 178889.3941 145188.7633 1.040524001 1.212042524 1.320642737 1.230322414 1.456706577 1.246275736 1.185089486 1.413905165 1.232115972 1 17.14757028 -4.320504486 2.855150138 1.278033342 1.013842251 0.220843674 0.119963082 0.45605802 5.608588225 0.028917543 0.260024273 4.78E-05 4.320504486 -0.264191091 TES(ph)VPSDINNPVDR ddPTM_HeLa_A486_30min_R1 3 TESVPSDINNPVDR 14 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 T(0.011)ES(0.987)VPS(0.001)DINNPVDR;T(0.008)ES(0.979)VPS(0.013)DINNPVDR;TES(0.995)VPS(0.005)DINNPVDR ;; 180.11 2.64E-17 2047160000 1129980 1285850 1011120 446620 1391330 1261560 1547740 1512180 1125040 1679500 TRUE FALSE FALSE 1050774.237 1183954.563 1402652.743 1039753.931 1216816.418 1105921.554 1160479.082 1167889.625 1222559.373 1258942.268 0.834648469 0.940435946 1.114151759 0.825894846 0.966538696 0.878452953 0.921788958 0.927675283 0.971100426 1 20.2637807 -7.930664027 3.093746065 0.999531401 0.929095695 0.093160893 0.076154964 0.597524336 11.90924277 0.072149525 0.019363076 1.17E-08 7.930664027 -0.070435706 TESSPSEASQHSMQS(ph)PQK ddPTM_HeLa_A486_30min_R1 1 TESSPSEASQHSMQSPQK 18 0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 TESSPSEASQHSMQS(1)PQK 166.38 2.06E-14 0 124620 109400 63990 3270.4 118760 122420 140970 130880 108410 75596 TRUE FALSE FALSE 115884.7815 100730.7456 88768.64171 7613.656477 103864.0134 107317.0651 105697.815 101081.4811 117807.0661 56666.26955 2.045039888 1.77761385 1.56651642 0.134359585 1.832907199 1.893843832 1.86526863 1.783803343 2.078962794 1 15.79020261 TESVSDKEDKPPLAPSGGTEGPEQPPPPCPS(ph)QTGSPPVGLIK ddPTM_HeLa_A486_30min_R1 1 TESVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVGLIK 42 2 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 TESVSDKEDKPPLAPSGGTEGPEQPPPPCPS(0.333)QT(0.333)GS(0.333)PPVGLIK 56.111 0.004539 169170000 65994 60908 23659 46984 46415 87164 98337 91605 41888 136550 TRUE FALSE FALSE 61368.16139 56081.42826 32820.39841 109381.1264 40593.1979 76410.5919 73732.0425 70748.54122 45518.88557 102356.9912 0.599550267 0.54790032 0.320646377 1.068623893 0.396584517 0.746510727 0.720342027 0.69119403 0.444707147 1 16.64325012 -11.52964556 2.295638317 7.237760146 0.620587642 0.245762465 0.202072129 8250331.535 544757.3141 270931535.3 0.051103895 2.95E-12 11.52964556 -6.617172504 TET(ph)PPPLASLNVSK ddPTM_HeLa_A485_30min_R1 3 TETPPPLASLNVSK 14 0 K7ELG9;Q3MHD2;Q3MHD2-2 K7ELG9 LSM12 Protein LSM12 homolog 1 0 T(0.031)ET(0.969)PPPLASLNVSK;T(0.003)ET(0.997)PPPLASLNVSK;TET(1)PPPLASLNVSK ;; 196.18 5.75E-18 1250000000 1322890 1168420 625700 1774150 1023310 1096000 1559840 1369510 776100 2005240 TRUE FALSE FALSE 1617162.317 1305056.555 857172.4675 1871067.322 921425.6633 1153384.865 1226567.441 1033635.525 931856.1512 1505370.572 1.074261944 0.86693375 0.569409608 1.242928059 0.612092252 0.766180027 0.814794353 0.686631946 0.619021103 1 20.52168724 TET(ph)PPPLASLNVSK ddPTM_HeLa_A486_30min_R1 7 TETPPPLASLNVSK 14 0 K7ELG9;Q3MHD2;Q3MHD2-2 K7ELG9 LSM12 Protein LSM12 homolog 1 0 T(0.171)ET(0.829)PPPLASLNVSK;TET(1)PPPLASLNVSK;T(0.001)ET(0.999)PPPLASLNVSK;TET(1)PPPLASLNVSK;TET(1)PPPLASLNVSK;TET(1)PPPLASLNVSK;TET(1)PPPLASLNVSK ;;;;;; 233.28 2.55E-28 2705445000 2306595 2123224 747753 830009 1357748 2112058 2387160 2040621 1505533 3459490 TRUE FALSE FALSE 2144914.602 1954971.998 1037302.987 1932302.898 1187446.585 1851493.758 1789867.319 1576016.145 1636033.813 2593211.186 0.827126851 0.753880751 0.400007139 0.745139042 0.457905855 0.713977237 0.690212709 0.607746933 0.630891083 1 21.30630827 -10.38468704 3.085020894 1.004490584 0.642633307 0.413138813 0.125945096 82039696.22 105066483.7 3304565.865 0.030237079 4.12E-11 10.38468704 -0.361857277 TET(ph)QEKNPLPSK ddPTM_HeLa_A485_30min_R1 1 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 T(0.003)ET(0.997)QEKNPLPSK 164.41 2.96E-10 492960000 648310 358840 243290 1495400 562010 485040 1071900 700830 515610 2432100 TRUE FALSE FALSE 792524.3229 400803.2165 333293.0951 1577089.915 506054.3111 510435.9444 842879.8084 528950.3436 619088.1975 1825822.229 0.434064341 0.219519299 0.182544111 0.863769698 0.27716516 0.279564974 0.461643962 0.289705282 0.339073644 1 20.80011487 -10.34930588 3.572198815 1.002977343 0.371031291 0.512106638 0.18392129 446656623 646075773.4 13832456.49 0.047517928 4.47E-11 10.34930588 -0.631946052 TET(ph)QEKNPLPSK ddPTM_HeLa_A486_30min_R1 5 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 T(0.01)ET(0.99)QEKNPLPSK;T(0.002)ET(0.998)QEKNPLPSK;T(0.03)ET(0.97)QEKNPLPSK;T(0.012)ET(0.988)QEKNPLPSK;T(0.093)ET(0.907)QEKNPLPSK ;;;; 137.19 1.34E-05 1770460000 2390590 2316450 772639 1559793 1553970 3646150 4841050 4586660 2025340 5194250 TRUE FALSE FALSE 2223021.986 2132886.066 1071825.513 3631276.932 1359056.592 3196325.084 3629768.087 3542377.644 2200898.102 3893575.991 0.570946089 0.547796183 0.275280492 0.932632865 0.349051 0.820922743 0.932245343 0.909800567 0.565263939 1 21.89266435 -6.377730526 7.56704562 0.848367979 0.543981179 0.390684981 0.193940495 0.296021377 17.52026554 0.066189371 0.05825639 4.19E-07 6.377730526 -0.304386799 TET(ph)QEKNPLPSKETIEQEK ddPTM_HeLa_A485_30min_R1 2 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 T(0.003)ET(0.997)QEKNPLPSKETIEQEK;T(0.12)ET(0.875)QEKNPLPS(0.004)KET(0.001)IEQEK ; 147.39 1.89E-08 670190000 488480 357130 237335 878050 535040 608780 1138400 1033910 426140 1499830 TRUE FALSE FALSE 597140.6908 398893.2469 325135.0928 926015.6482 481769.539 640654.7794 895171.5401 780341.9514 511662.3892 1125949.983 0.530343887 0.354272617 0.28876513 0.822430536 0.427878277 0.568990443 0.795036683 0.693052056 0.454427281 1 20.10271131 -14 0.069907572 2.513230824 0.0063639 0.447017141 0.161151852 288.1389486 1.447471476 70.65453741 8.808093438 1.00E-14 14 -2.506866924 TET(ph)QEKNPLPSKETIEQEK ddPTM_HeLa_A486_30min_R1 2 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 T(0.185)ET(0.805)QEKNPLPS(0.005)KET(0.006)IEQEK;T(0.053)ET(0.901)QEKNPLPS(0.044)KET(0.001)IEQEK ; 109.91 5.57E-05 716150000 668880 547600 245360 546100 507550 927750 1522730 1337470 468960 1596960 TRUE FALSE FALSE 621994.9661 504206.1817 340369.963 1271348.398 443888.3463 813293.6377 1141726.848 1032957.278 509609.8304 1197070.822 0.519597467 0.42119996 0.284335694 1.062049442 0.370812101 0.679403109 0.953767169 0.862904065 0.425714019 1 20.19107708 -4.430711217 0.195003199 0.960995643 1.58E-18 0.243611303 0.239986905 20.90435832 0.812372401 0.591498839 4.992654363 3.71E-05 4.430711217 -0.960995643 TETDSVGT(ph)PQSNGGMR ddPTM_HeLa_A486_30min_R1 2 TETDSVGTPQSNGGMR 16 0 Q9H0H5;F8VRD2;H0YIK5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 TETDS(0.001)VGT(0.997)PQS(0.002)NGGMR;TETDSVGT(1)PQSNGGMR ; 228.2 1.08E-32 538960000 664330 653630 524800 261220 737850 649100 749090 690960 567730 723010 TRUE FALSE FALSE 617763.8976 601833.9783 728016.6146 608133.3613 645301.9728 569020.6416 561659.7589 533643.4916 616941.2935 541963.59 1.139862362 1.110469392 1.343294325 1.122092651 1.190674032 1.049924113 1.036342236 0.984648234 1.13834454 1 19.04783641 -6.283411626 5.741694371 1.039707187 1.183337926 0.487769099 0.071426778 0.15743743 18.17621284 0.02485965 0.022593026 5.21E-07 6.283411626 0.143630738 TETQEK(ac)NPLPSKETIEQEK ddPTM_HeLa_A485_30min_R1 1 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 TETQEK(1)NPLPSKETIEQEK 131.67 2.99E-06 23782000 6040.8 4949.7 5897.1 11348 8818.5 8019.7 17542 16001 5861.6 21462 FALSE TRUE FALSE 7384.555119 5528.524358 8078.682689 11967.91251 7940.499176 8439.599091 13794.0084 12076.72966 7037.969354 16111.91838 0.458328732 0.343132595 0.501410353 0.74279873 0.492833875 0.523810939 0.856136934 0.74955256 0.43681759 1 13.97584066 -10.27372868 0.078172147 1.807805512 3.38E-15 0.499509733 0.142715314 83.49251474 1.158418663 21.03735806 7.737299215 5.32E-11 10.27372868 -1.807805512 TETQEK(ac)NPLPSKETIEQEK ddPTM_HeLa_A486_30min_R1 1 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 TETQEK(1)NPLPSKETIEQEK 298.81 3.56E-71 26062000 21972 17358 13176 14165 20378 27483 42995 41225 15753 66504 FALSE TRUE FALSE 20431.87626 15982.48886 18278.10007 32976.83586 17822.00122 24092.42689 32237.19625 31838.96744 17118.48272 49850.96553 0.409859188 0.320605402 0.366654886 0.661508468 0.357505638 0.483289072 0.646671452 0.638683065 0.343393203 1 15.60533383 -14 0.162034203 2.93845734 0.339548545 0.623824537 0.124918409 87.56161824 0.808828698 54.69098972 0.518248833 1.00E-14 14 -2.598908795 TETQEKNPLPSK ddPTM_HeLa_A485_30min_R1 2 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 ; ; 188.09 8.88E-10 106048000 464950 282870 236734 585020 511010 309290 472400 316240 280641 661500 FALSE FALSE TRUE 568376.5234 315949.1859 324311.7579 616978.1613 460132.0501 325483.9461 371467.8808 238681.6442 336963.0745 496600.224 1.144535375 0.636224413 0.653064059 1.242404114 0.926564323 0.655424485 0.748021976 0.480631366 0.678539916 1 18.92172539 -6.260173266 24.56389003 0.682281655 0.907781642 0.184747613 0.212994503 151.577154 2940766.823 0.073583993 0.069722525 5.49E-07 6.260173266 0.225499987 TETQEKNPLPSK ddPTM_HeLa_A486_30min_R1 1 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 126.95 0.00046201 33345000 46631 45914 22483 19032 41580 50359 58961 50128 34579 56043 FALSE FALSE TRUE 43362.4077 42275.60742 31189.01972 44307.45782 36364.64868 44146.21859 44208.33417 38714.94869 37576.33556 42009.46802 1.032205589 1.006335224 0.742428343 1.054701712 0.86562983 1.050863547 1.052342157 0.921576742 0.894473016 1 15.3584269 TETQEKNPLPSKETIEQEK ddPTM_HeLa_A485_30min_R1 4 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 ;;; ;;; 175.73 7.80E-18 373837000 572437 478078 292445 688289 692851 780746 1350228 1195184 452418 1114503 FALSE FALSE TRUE 699773.6358 533985.0634 400632.5752 725888.4852 623868.3217 821624.6533 1061740.757 902063.25 543214.1428 836677.913 0.836371589 0.638220581 0.478837279 0.867584137 0.745649326 0.982008298 1.2689958 1.078148755 0.649251204 1 19.67431283 -6.072665331 1.955178195 1.018450126 0.67731299 0.391312709 0.174738395 0.339952099 2.588067649 0.06882198 0.071874596 8.46E-07 6.072665331 -0.341137136 TETQEKNPLPSKETIEQEK ddPTM_HeLa_A486_30min_R1 2 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 ; ; 187.33 2.65E-18 127498800 169924 141101 99587.3 97971 186992 169762 237996 237844 125969 242177 FALSE FALSE TRUE 158013.2051 129919.6429 138150.1696 228081.4392 163537.7197 148818.4905 178446.8835 183692.1133 136888.0943 181534.3029 0.870431663 0.715675444 0.76101413 1.256409591 0.900864008 0.819781651 0.982992639 1.011886516 0.754061861 1 17.46988266 TETQEKNPLPSKETIEQEK(ac)QAGES ddPTM_HeLa_A486_30min_R1 1 TETQEKNPLPSKETIEQEKQAGES 24 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 TETQEKNPLPSK(0.002)ETIEQEK(0.998)QAGES 61.136 0.027218 10451000 10315 11499 9924.5 11197 26661 16327 29730 29432 11698 20500 FALSE TRUE FALSE 9591.971767 10587.77736 13767.53219 26067.18187 23316.92878 14312.74074 22291.23955 22730.9761 12711.99206 15366.66657 0.62420641 0.689009377 0.895934855 1.696345902 1.517370646 0.931414805 1.450622973 1.479239235 0.827244608 1 13.90751662 -5.038372842 6.341664413 1.296780625 0.685831768 0.470916814 0.266771072 0.158732733 18.74486162 0.072491199 0.131523704 9.15E-06 5.038372842 -0.610948856 TEVS(ph)PVPR ddPTM_HeLa_A485_30min_R1 1 TEVSPVPR 8 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 TEVS(1)PVPR 148.91 0.00026141 1423400000 1325600 1486000 1329900 1606200 1887200 1373700 1768200 1672200 1285500 2003800 TRUE FALSE FALSE 1620475.147 1659774.774 1821885.352 1693942.639 1699303.742 1445624.808 1390409.625 1262090.328 1543488.059 1504289.537 1.077236201 1.103361243 1.211126786 1.126074866 1.129638743 0.961001704 0.924296547 0.838994287 1.02605783 1 20.52065084 -6.293934513 3.971012312 0.935090508 1.133737016 0.71330146 0.056654448 0.115996916 4.094444804 0.020387448 0.018505954 5.08E-07 6.293934513 0.198646508 TEVSETARPS(ph)SPDTR ddPTM_HeLa_A485_30min_R1 1 TEVSETARPSSPDTR 15 1 O75132 O75132 ZBED4 Zinc finger BED domain-containing protein 4 1 0 TEVS(0.002)ET(0.114)ARPS(0.681)S(0.203)PDTR 95.751 0.0025925 0 119560 187640 222820 108550 230070 130430 159960 172510 168020 141450 TRUE FALSE FALSE 146155.7095 209582.8657 305250.3903 114479.8116 207163.423 137259.1131 125783.2392 130201.652 201740.0728 106189.1182 1.376371817 1.973675545 2.874592006 1.078074793 1.950891264 1.292591138 1.184520988 1.226129892 1.899818703 1 16.69627641 -5.294064522 24.99980572 1.397925571 2.064760108 0.333505287 0.451937061 749.5182512 574334.8869 0.126819957 0.188119636 5.08E-06 5.294064522 0.666834537 TEWLDGK ddPTM_HeLa_A485_30min_R1 3 TEWLDGK 7 0 P62937;P62937-2;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34;P0DN37 P62937 PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C" 0 0 ;; ;; 170.06 0.00071586 206790000 561940 460870 369500 744150 726570 715010 1092820 1204940 421450 1043420 FALSE FALSE TRUE 686941.6143 514764.7375 506193.4262 784801.0302 654230.1397 752446.818 859330.0795 909426.5757 506031.1492 783314.5967 0.876967718 0.657162192 0.646219831 1.00189762 0.83520739 0.960593382 1.097043363 1.160997867 0.646012664 1 19.57923232 -5.266720555 24.78566213 0.964962459 0.719821138 0.344895814 0.145289325 407.7795413 1913795.637 0.040689526 0.062408022 5.41E-06 5.266720555 -0.245141321 TEWLDGK ddPTM_HeLa_A486_30min_R1 1 TEWLDGK 7 0 P62937;P62937-2;P0DN26;F5H284;A0A075B767;Q9Y536;A0A0B4J2A2;A0A075B759;A0A0H2UH34;P0DN37 P62937 PPIA;PPIAL4D;PPIAL4C;PPIAL4A;PPIAL4E "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C" 0 0 154.35 0.028481 209550000 363960 428210 267390 229160 731730 566520 674550 607850 432410 629810 FALSE FALSE TRUE 338448.2835 394277.0801 370930.569 533496.0611 639949.6003 496628.5224 505770.4553 469455.8243 469891.647 472101.4766 0.71689732 0.835153245 0.785700929 1.130045313 1.355533994 1.05195291 1.071317249 0.994396009 0.995319164 1 18.84873747 -5.257279315 24.63158261 1.094537258 0.784840742 0.645747624 0.103774231 194.5756559 1152069.232 0.031004913 0.051336691 5.53E-06 5.257279315 -0.309696515 TFCPPPLPKPSSTTPTPLVSETGGNS(ph)PSDKVDNELK ddPTM_HeLa_A486_30min_R1 2 TFCPPPLPKPSSTTPTPLVSETGGNSPSDKVDNELK 36 2 A0A3B3IRW6;Q2KHR3-2;Q2KHR3;H0YCQ7 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 1 0 TFCPPPLPKPSSTTPTPLVSETGGNS(0.997)PS(0.003)DKVDNELK;TFCPPPLPKPSSTTPTPLVSETGGNS(0.792)PS(0.208)DKVDNELK ; 250.27 2.10E-52 1238010000 600670 507090 216335 405960 453640 689980 937400 840330 402950 1076210 TRUE FALSE FALSE 558566.1349 466906.3416 300105.7057 945095.3961 396740.2412 604857.2828 702852.6052 649005.2033 437878.0304 806720.011 0.69239157 0.578771241 0.372007266 1.17152839 0.491794223 0.749773496 0.871247267 0.804498704 0.54278811 1 19.62170852 -14 0.069121323 1.899900319 0.365921474 0.147681002 0.214119193 627.5860249 3.121006748 93.2944648 11.89875309 1.00E-14 14 -1.533978845 TFCQLILDPIFK ddPTM_HeLa_A485_30min_R1 3 TFCQLILDPIFK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ;; ;; 288.11 3.94E-62 114391000 296872 277358 242229 349691 432330 297718 444256 420483 256983 461109 FALSE FALSE TRUE 362910.1522 309792.6054 331839.5871 368793.7339 389285.7072 313306.0541 349337.0764 317358.885 308557.1309 346163.0124 1.048379345 0.894932718 0.958622312 1.065375909 1.124573375 0.905082412 1.009169275 0.91679028 0.891363664 1 18.40109205 TFCQLILDPIFK ddPTM_HeLa_A486_30min_R1 2 TFCQLILDPIFK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 222.49 1.39E-20 147815000 420640 433730 267470 188434 434980 428390 556390 509880 396190 518080 FALSE FALSE TRUE 391155.3082 399359.6552 371041.5471 438683.8749 380420.7524 375539.5974 417175.3371 393791.4546 430532.0682 388349.3959 1.007225226 1.028351426 0.955432276 1.129611323 0.979583737 0.967014759 1.074226821 1.014013306 1.108620414 1 18.5669957 -6.786026598 24.99570852 1.050382898 1.013392465 0.108393667 0.053144395 573.7441981 583270.4727 0.021717797 0.014649621 1.64E-07 6.786026598 -0.036990433 TFDETVSTYVPLAQQVEDFHKRT(ph)PNR ddPTM_HeLa_A485_30min_R1 2 TFDETVSTYVPLAQQVEDFHKRTPNR 26 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 TFDETVSTYVPLAQQVEDFHKRT(1)PNR;TFDETVSTYVPLAQQVEDFHKRT(1)PNR ; 223.56 3.12E-38 572360000 179559 254190 177067 176712 358950 281110 405610 481200 192541 251720 TRUE FALSE FALSE 219501.2801 283915.3093 242571.4517 186365.3291 323211.6777 295828.4849 318948.11 363184.9455 231182.2126 188970.8366 1.161561668 1.502429235 1.283644906 0.986212119 1.710378615 1.565471637 1.687816574 1.921910027 1.223375082 1 17.52780408 -5.777106849 24.9999887 1.575102705 1.256258352 0.1876129 0.2736915 342.7017334 546834.0062 0.081916398 0.093197097 1.67E-06 5.777106849 -0.318844354 TFDETVSTYVPLAQQVEDFHKRT(ph)PNR ddPTM_HeLa_A486_30min_R1 3 TFDETVSTYVPLAQQVEDFHKRTPNR 26 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 TFDETVSTYVPLAQQVEDFHKRT(1)PNR;TFDETVS(0.002)T(0.009)Y(0.009)VPLAQQVEDFHKRT(0.98)PNR;TFDETVSTYVPLAQQVEDFHKRT(1)PNR ;; 124.82 6.43E-06 899670000 314536 252943 197982 185195 445915 312572 449828 453319 215912 437145 TRUE FALSE FALSE 292488.6507 232898.8755 274645.9325 431143.3192 389984.1827 274010.0446 337276.2766 350108.1596 234627.426 327681.0467 0.892601674 0.710748693 0.838150193 1.31574079 1.190133475 0.836209623 1.029282224 1.068441898 0.716023793 1 18.3219327 -5.026131809 24.62968017 1.028671308 0.794868649 0.259113263 0.161957067 757.3116314 713779.8902 0.045199878 0.078668369 9.42E-06 5.026131809 -0.233802658 TFDS(ph)VDKVLSEVDFEER ddPTM_HeLa_A486_30min_R1 1 TFDSVDKVLSEVDFEER 17 1 I3L2J0;I3L135 I3L2J0 CIC 1 0 T(0.111)FDS(0.875)VDKVLS(0.014)EVDFEER 55.007 0.017817 17702000 9876.6 13923 6121.1 8523.7 11984 20286 27130 29915 11933 23347 TRUE FALSE FALSE 9184.301343 12819.69077 8491.353849 19843.60436 10480.85497 17783.31957 20341.78705 23104.00754 12967.36205 17500.75924 0.524794451 0.732521978 0.48519917 1.133871056 0.598880016 1.016145604 1.162337403 1.320171727 0.740959971 1 14.09512989 -5.571986155 0.779458504 1.07604352 0.552722593 0.403061147 0.214709494 0.749644055 0.931899396 0.111651797 0.247984213 2.68E-06 5.571986155 -0.523320927 TFFSFPAVVAPFK ddPTM_HeLa_A485_30min_R1 1 TFFSFPAVVAPFK 13 0 P41250 P41250 GARS Glycine--tRNA ligase 0 0 98.943 0.0094002 5120100 6260.7 6894.5 5835.1 6730.3 8675.9 5643.3 8363.1 7442.2 6647.1 11102 FALSE FALSE TRUE 7653.371116 7700.751801 7993.746309 7097.959247 7812.096933 5938.774462 6576.255365 5616.988781 7981.111999 8334.475717 0.918278651 0.923963554 0.959118075 0.851638362 0.937323138 0.712555254 0.789042477 0.673946265 0.957602166 1 13.02487573 -6.235214768 24.44199909 0.803901687 0.916982531 0.162988896 0.096974839 805.7227568 750954.1044 0.030405371 0.030395874 5.82E-07 6.235214768 0.113080845 TFFSFPAVVAPFK ddPTM_HeLa_A486_30min_R1 1 TFFSFPAVVAPFK 13 0 P41250 P41250 GARS Glycine--tRNA ligase 0 0 136.63 0.00024512 4919700 11742 12306 7736.1 4657.1 12278 11634 13233 13746 10806 14421 FALSE FALSE TRUE 10918.94644 11330.82774 10731.7251 10841.96416 10737.97875 10198.71537 9921.963436 10616.33587 11742.67278 10809.88774 1.010088791 1.048191065 0.992769339 1.002967322 0.993347851 0.943461728 0.917859989 0.982094924 1.086289985 1 13.40006392 -5.148509801 1.56124051 0.981736763 1.028107623 0.093469198 0.0427787 0.888968636 4.144187555 0.014438873 0.037151711 7.10E-06 5.148509801 0.04637086 TFGHNT(ph)MDAVPR ddPTM_HeLa_A485_30min_R1 2 TFGHNTMDAVPR 12 0 G3XAL9;P55011-3;P55011 G3XAL9 SLC12A2 Solute carrier family 12 member 2 1 0 TFGHNT(1)MDAVPR;T(0.003)FGHNT(0.997)MDAVPR ; 169.37 2.05E-10 204100000 369420 285900 165067 240620 188041 244210 319090 290990 182039 425740 TRUE FALSE FALSE 451596.2045 319333.518 226132.1523 253764.4613 169318.9778 256996.458 250913.8148 219624.2462 218572.5575 319610.8532 1.412956413 0.999132272 0.707523384 0.793979487 0.529766046 0.804091774 0.78506037 0.687161415 0.683870887 1 18.28595687 -4.364259333 2.101421193 0.733074226 1.521696282 0.758238654 0.115013722 0.233877984 1.365626564 0.029147565 0.321884737 4.32E-05 4.364259333 0.788622056 TFHIFYYLLSGAGEHLK ddPTM_HeLa_A485_30min_R1 4 TFHIFYYLLSGAGEHLK 17 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 272.16 7.80E-55 866959200 893943 794299.9 721122 844245 1141193 603328.2 1315255.6 1020868.8 524456.7 1389067.5 FALSE FALSE TRUE 1092797.536 887186.3638 987895.0362 890363.9666 1027571.818 634917.5316 1034240.496 770499.1261 629710.3491 1042798.536 1.047946941 0.850774462 0.947349849 0.85382165 0.985398217 0.608859247 0.991793199 0.738876302 0.603865778 1 19.99202903 -6.21999973 24.98922773 0.785053074 0.928212192 0.228350025 0.135813315 779.2769445 469925.0456 0.042906761 0.042906375 6.03E-07 6.21999973 0.143159118 TFHIFYYLLSGAGEHLK ddPTM_HeLa_A486_30min_R1 3 TFHIFYYLLSGAGEHLK 17 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;; ;; 284.25 8.99E-56 832399000 646002 688670 541003.2 315699.9 885148 684175 1271749 1044451 663249.8 802030 FALSE FALSE TRUE 600720.5958 634097.2811 750494.1276 734965.3218 774124.4842 599768.4447 953543.949 806652.3075 720740.8267 601196.4677 0.999208459 1.05472556 1.248334227 1.222504391 1.287639775 0.997624698 1.586077098 1.341744922 1.198844081 1 19.19747701 -4.709491265 3.529910353 1.254433071 1.009348297 0.210829541 0.15932225 0.319662605 7.943872821 0.041658187 0.122821673 1.95E-05 4.709491265 -0.245084774 TFIAIKPDGVQR ddPTM_HeLa_A485_30min_R1 4 TFIAIKPDGVQR 12 1 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;F6XY72;E5RHP0;C9K028 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ;;; ;;; 152.99 1.04E-05 1249220000 1345930 1234000 1129830 1566790 1876990 1803430 2571740 2781960 1196860 2243040 FALSE FALSE TRUE 1645327.485 1378305.566 1547801.133 1652379.77 1690110.285 1897854.806 2022266.74 2099679.948 1437058.824 1683891.408 0.977098331 0.818524021 0.919181086 0.981286419 1.003693158 1.127064843 1.200948428 1.246921231 0.853415379 1 20.68336767 -5.779667493 1.672657721 1.105990217 0.899117335 0.321470662 0.109804839 0.379241915 2.197601365 0.039709577 0.052396031 1.66E-06 5.779667493 -0.206872882 TFIAIKPDGVQR ddPTM_HeLa_A486_30min_R1 3 TFIAIKPDGVQR 12 1 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;F6XY72;E5RHP0;C9K028 Q32Q12 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ;; ;; 147.18 2.17E-07 839930000 767680 1056590 805030 448746 1469490 1215220 1382020 1315070 1068180 1381690 FALSE FALSE TRUE 713869.5963 972861.9604 1116759.175 1044703.366 1285172.862 1065298.512 1036223.978 1015657.269 1160770.702 1035705.831 0.68925903 0.939322664 1.078259041 1.008687347 1.240866686 1.028572477 1.000500285 0.98064261 1.120753276 1 19.98218286 -4.311736126 2.196929212 1.05886218 0.615116286 0.696782423 0.073770218 0.314915342 1.902707691 0.019976436 0.261856396 4.88E-05 4.311736126 -0.443745894 TFK(ac)K(ac)AAGAEEK ddPTM_HeLa_A485_30min_R1 1 TFKKAAGAEEK 11 2 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 0 2 TFK(1)K(1)AAGAEEK 99.568 0.012259 653280000 1062300 638900 912580 2120300 1919200 832940 1539600 1235200 1164000 2975300 FALSE TRUE FALSE 1298604.97 713613.7973 1250181.318 2236126.62 1728117.709 876551.4504 1210651.883 932265.2633 1397604.123 2233612.466 0.581392247 0.319488635 0.559712724 1.0011256 0.77368735 0.392436675 0.542015189 0.417380041 0.625714686 1 21.09094747 -10.74215947 1.895116743 1.137046823 0.57778514 0.313868687 0.186631164 501159.0485 253580.7047 320343.0481 0.054844821 1.81E-11 10.74215947 -0.559261683 TFK(ac)K(ac)AAGAEEK ddPTM_HeLa_A486_30min_R1 2 TFKKAAGAEEK 11 2 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 0 2 ; TFK(1)K(1)AAGAEEK;TFK(1)K(1)AAGAEEK 93.843 0.021393 2013490000 2513190 5814000 4092700 2869200 7381000 6644500 8442700 8275700 4851600 5086500 FALSE TRUE FALSE 2337028.359 5353277.466 5677503.046 6679642.601 6455206.155 5824769.146 6330247.162 6391503.767 5272140.594 3812807.292 0.612941641 1.404025185 1.489061107 1.751896199 1.693032367 1.527685167 1.660258879 1.676324891 1.382745098 1 21.86242219 -4.197570597 2.236371159 1.566693324 0.264555494 0.624588575 0.208129701 0.455508843 2.287740609 0.051167447 1.245565741 6.34E-05 4.197570597 -1.30213783 TFKES(ph)PK ddPTM_HeLa_A485_30min_R1 2 TFKESPK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 T(0.014)FKES(0.986)PK;T(0.017)FKES(0.983)PK ; 55.549 0.022096 901270000 1248750 966280 486150 3045400 1473690 1033540 2259200 2587000 989980 6005500 TRUE FALSE FALSE 1526530.129 1079278.04 665997.1154 3211762.491 1326964.249 1087654.556 1776503.464 1952534.194 1188659.905 4508439.373 0.338593913 0.239390608 0.147722318 0.712388972 0.294328955 0.241248571 0.394039559 0.433084274 0.263652188 1 22.10419669 -10.71907749 2.630105662 1.119857911 0.34281033 0.6453808 0.146651354 23369779.04 18778443.5 18424893.31 0.039625294 1.91E-11 10.71907749 -0.777047581 TFKES(ph)PK ddPTM_HeLa_A486_30min_R1 3 TFKESPK 7 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 T(0.007)FKES(0.993)PK;T(0.006)FKES(0.994)PK;TFKES(1)PK ;; 61.353 0.01682 1366550000 2044620 1432420 591720 1487940 1506610 2280960 3199930 2462020 1236610 4875400 TRUE FALSE FALSE 1901302.696 1318909.822 820849.8308 3463999.516 1317636.925 1999558.346 2399273.669 1901471.792 1343800.35 3654568.106 0.520253732 0.360893486 0.224609258 0.947854689 0.360545183 0.54713944 0.656513601 0.520300002 0.367704284 1 21.80126949 -11.10139784 2.513709573 1.892128562 0.503979313 0.383667383 0.189829265 12628667.42 4051131.994 64402548.05 0.047687741 7.92E-12 11.10139784 -1.388149248 TFLDKDAQRLS(ph)PIPEEVPK ddPTM_HeLa_A485_30min_R1 5 TFLDKDAQRLSPIPEEVPK 19 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK;T(0.001)FLDKDAQRLS(0.999)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK ;;;; 185.84 1.49E-18 4647160000 3850030 3402800 2160610 5746170 5585160 5132790 9491200 9740270 3676550 8512420 TRUE FALSE FALSE 4706455.891 3800727.86 2959909.549 6060068.717 5029081.86 5401534.948 7463327.584 7351453.51 4414399.862 6390430.353 0.736484967 0.594753037 0.463178438 0.948303695 0.786970764 0.845253707 1.167891233 1.150384732 0.690782877 1 22.60748166 -5.701271035 1.198235567 0.992881233 0.605169698 0.451447332 0.162117491 0.420023681 1.26723778 0.067018383 0.104438725 1.99E-06 5.701271035 -0.387711535 TFLDKDAQRLS(ph)PIPEEVPK ddPTM_HeLa_A486_30min_R1 5 TFLDKDAQRLSPIPEEVPK 19 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK;TFLDKDAQRLS(1)PIPEEVPK ;;;; 205.02 5.31E-26 7451640000 9158720 7446220 3553820 5280430 8594840 9950450 14932910 14323880 6403250 14760010 TRUE FALSE FALSE 8516741.024 6856154.409 4929954.279 12293107.9 7516795.023 8722864.648 11196537.97 11062645.21 6958288.866 11064007.42 0.769770003 0.61968093 0.445584867 1.11108999 0.679391719 0.788400108 1.01197853 0.999876879 0.628912165 1 23.39937069 -5.253067979 24.99920718 0.880774811 0.612478844 0.378282694 0.162427989 686.3215128 2049532.765 0.043866896 0.074427507 5.58E-06 5.253067979 -0.268295967 TFLEGDWTS(ph)PSK ddPTM_HeLa_A485_30min_R1 5 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TFLEGDWT(0.008)S(0.944)PS(0.048)K;TFLEGDWTS(0.818)PS(0.182)K;TFLEGDWT(0.014)S(0.986)PSK;TFLEGDWTS(1)PSK;TFLEGDWTS(0.994)PS(0.006)K ;;;; 335.79 2.59E-73 2622510000 7472070 6895770 5151842 10127610 9707460 7613400 12536140 11366180 6190280 13347370 TRUE FALSE FALSE 9134206.193 7702170.316 7057722.742 10680855.69 8740951.197 8012025.851 9857691.278 8578606.534 7432612.415 10020116.3 0.911586844 0.768670751 0.704355372 1.06594129 0.872340294 0.799594098 0.983790106 0.85613842 0.741769077 1 23.25639592 -11.39857228 2.32187571 2.198520209 0.857746742 0.144115935 0.105186603 6543259.203 1638436.533 40387097.29 0.027179753 3.99E-12 11.39857228 -1.340773467 TFLEGDWTS(ph)PSK ddPTM_HeLa_A486_30min_R1 6 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TFLEGDWT(0.068)S(0.932)PSK;TFLEGDWT(0.002)S(0.998)PSK;TFLEGDWT(0.002)S(0.981)PS(0.017)K;TFLEGDWT(0.002)S(0.994)PS(0.004)K;TFLEGDWTS(0.999)PS(0.001)K;TFLEGDWTS(0.986)PS(0.014)K ;;;;; 340.81 1.17E-73 2389436000 6304400 6005250 3135190 3133580 5428440 6571620 8265860 7910270 4042590 9052280 TRUE FALSE FALSE 5862494.116 5529372.119 4349219.531 7295132.602 4747554.437 5760880.34 6197654.401 6109274.201 4393004.956 6785530.168 0.863969944 0.814876949 0.640955006 1.075101344 0.699658585 0.848994875 0.913363326 0.900338522 0.64740777 1 22.69403011 -10.54424622 2.84824287 1.008713809 0.826684929 0.150004245 0.12627258 59607197.94 62519059.9 3982520.735 0.030799165 2.86E-11 10.54424622 -0.18202888 TFNKDTVIIVS(ph)EPS(ph)EDEESQGLPTMAR ddPTM_HeLa_A485_30min_R1 6 TFNKDTVIIVSEPSEDEESQGLPTMAR 27 1 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 TFNKDT(0.001)VIIVS(0.999)EPS(1)EDEESQGLPTMAR;TFNKDTVIIVS(1)EPS(1)EDEESQGLPTMAR;TFNKDTVIIVS(0.999)EPS(0.997)EDEES(0.003)QGLPTMAR;TFNKDTVIIVS(1)EPS(1)EDEESQGLPTMAR;TFNKDTVIIVS(1)EPS(0.999)EDEES(0.001)QGLPTMAR;TFNKDT(0.003)VIIVS(0.996)EPS(0.996)EDEES(0.004)QGLPTMAR ;;;;; 147.36 5.48E-09 871750000 840285 1270090 926777 846936 1580100 1336810 1801960 2361240 1021714 1234640 TRUE FALSE FALSE 1027203.499 1418615.977 1269630.379 893201.9691 1422779.696 1406803.304 1416956.525 1782142.188 1226762.628 926866.9699 1.108253431 1.530549716 1.369808635 0.963678714 1.535041966 1.517804982 1.528759327 1.92275941 1.32355847 1 19.82200276 TFNKDTVIIVS(ph)EPS(ph)EDEESQGLPTMAR ddPTM_HeLa_A486_30min_R1 4 TFNKDTVIIVSEPSEDEESQGLPTMAR 27 1 Q9H4L7-2;Q9H4L7;D6RAY8 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 TFNKDTVIIVS(1)EPS(0.993)EDEES(0.007)QGLPTMAR;TFNKDTVIIVS(1)EPS(1)EDEESQGLPTMAR;TFNKDTVIIVS(1)EPS(1)EDEESQGLPTMAR;TFNKDT(0.001)VIIVS(0.984)EPS(0.948)EDEES(0.067)QGLPTMAR ;;; 160.26 1.46E-13 620580000 1092580 878233 637706 428310 1148480 903450 1228690 1287580 756649 1234040 TRUE FALSE FALSE 1015995.784 808638.6186 884642.8416 997127.3256 1004426.929 791991.5246 921258.7662 994426.1417 822235.9445 925028.3517 1.098340156 0.874177118 0.956341327 1.077942448 1.085833669 0.856180811 0.995924897 1.075022338 0.888876479 1 19.81913806 -3.789751687 8.169229939 0.983791979 7.076598462 0.160366609 0.081285664 54084.70844 31098.41238 0.057716908 5991990.599 0.000162274 3.789751687 6.092806483 TFNQVEIKPEMIGHYLGEFSITYKPVK ddPTM_HeLa_A485_30min_R1 1 TFNQVEIKPEMIGHYLGEFSITYKPVK 27 2 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841 K7EM56 RPS15 40S ribosomal protein S15 0 0 114.83 2.58E-08 15604000 9447.5 7561.2 4498.2 9871.5 8403.8 9139.7 14376 15308 6892.7 16386 FALSE FALSE TRUE 11549.06378 8445.416566 6162.271366 10410.75505 7567.088164 9618.240559 11304.45016 11553.689 8276.001666 12301.27176 0.938851202 0.686548247 0.500945877 0.846315345 0.615146817 0.781889933 0.918965972 0.939227197 0.672776102 1 13.58651986 -6.55279989 5.517787782 0.875764975 0.709550358 0.243317856 0.136701711 0.26435561 22.39322806 0.051723384 0.040557532 2.80E-07 6.55279989 -0.166214617 TFNQVEIKPEMIGHYLGEFSITYKPVK ddPTM_HeLa_A486_30min_R1 2 TFNQVEIKPEMIGHYLGEFSITYKPVK 27 2 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841 K7EM56 RPS15 40S ribosomal protein S15 0 0 ; ; 162.45 3.02E-22 37631000 56324 36343 21438.2 19214.2 44422 52190 63931 51887 39470 70207 FALSE FALSE TRUE 52375.97846 33463.04832 29739.64517 44731.62863 38850.17854 45751.32843 47934.78761 40073.46279 42891.29138 52626.71023 0.995235656 0.635856738 0.565105534 0.849979572 0.738221682 0.86935566 0.910845223 0.761466233 0.815009929 1 15.68350759 -6.06995768 1.869522799 0.858746588 0.735101918 0.154364637 0.124523629 0.670944769 4.681839626 0.048303957 0.050577502 8.51E-07 6.06995768 -0.12364467 TFNS(ph)PNLK ddPTM_HeLa_A485_30min_R1 3 TFNSPNLK 8 0 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 TFNS(1)PNLK;TFNS(1)PNLK;TFNS(1)PNLK ;; 121.68 0.00069898 864790000 1740990 1323770 913700 2417410 1142300 1300130 1805830 1332020 1197970 4577900 TRUE FALSE FALSE 2128267.219 1478573.386 1251715.652 2549466.987 1028568.601 1368202.796 1419999.668 1005340.006 1438391.591 3436713.78 0.619273921 0.430228841 0.364218766 0.741832794 0.29928841 0.398113688 0.413185316 0.292529454 0.418536917 1 21.71259827 -9.955924889 4.806601037 1.000003651 0.437382991 0.617240198 0.131800463 3.62E+11 1.05E+12 35221993.98 0.03272994 1.11E-10 9.955924889 -0.562620661 TFNS(ph)PNLK ddPTM_HeLa_A486_30min_R1 3 TFNSPNLK 8 0 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 TFNS(1)PNLK;TFNS(1)PNLK;TFNS(1)PNLK ;; 155.98 0.00012149 681330000 1599020 1734170 1178880 611510 1940550 2101330 2007490 1679360 1927010 2885380 TRUE FALSE FALSE 1486936.955 1596748.053 1635373.908 1423626.184 1697148.124 1842089.269 1505194.769 1297006.388 2094044.778 2162862.067 0.687485798 0.738256996 0.756115673 0.658214042 0.784677003 0.85169059 0.695927305 0.599671337 0.968182303 1 21.04451023 -7.844532778 7.553865182 0.993046481 0.72696633 0.716166905 0.066093781 0.138748297 10.5942854 0.06621051 0.017167044 1.43E-08 7.844532778 -0.266080152 TFNS(ph)PNLKDGR ddPTM_HeLa_A485_30min_R1 2 TFNSPNLKDGR 11 1 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 T(0.001)FNS(0.999)PNLKDGR;T(0.017)FNS(0.983)PNLKDGR ; 115.38 0.0001737 1267050000 1305660 1240980 609170 1515260 917850 1511100 2082320 2033890 953840 3366540 TRUE FALSE FALSE 1596099.563 1386101.816 834527.3327 1598034.817 826465.6312 1590218.859 1637415.321 1535075.288 1145266.939 2527323.535 0.63153749 0.548446527 0.330202019 0.632303223 0.327012201 0.62921064 0.647885124 0.60739168 0.453154067 1 21.26917893 -14 0.313341181 5.22598373 0.512649134 0.580809554 0.118158037 215.7146201 1.945963909 602.4097544 0.109537831 1.00E-14 14 -4.713334596 TFNS(ph)PNLKDGR ddPTM_HeLa_A486_30min_R1 2 TFNSPNLKDGR 11 1 A0A087WZ85;A0A087WTM1;Q9Y6N7-5;A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A087WZ85;A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 T(0.013)FNS(0.987)PNLKDGR;TFNS(1)PNLKDGR ; 104.09 0.00039848 767170000 1406240 1232980 929620 556340 1870250 1565720 1580940 1387300 1444460 2688000 TRUE FALSE FALSE 1307669.838 1135274.174 1289593.76 1295187.636 1635665.806 1372557.385 1185372.091 1071442.075 1569666.956 2014907.304 0.648997517 0.563437421 0.640026346 0.642802591 0.811782161 0.681201256 0.588301054 0.531757502 0.779026883 1 20.94228204 -8.032115558 6.43658769 0.999964557 0.6421782 0.707585286 0.071886846 0.132511448 22.70462946 0.075395988 0.019545964 9.29E-09 8.032115558 -0.357786357 TFNT(ph)STGGLLLPSDTKR ddPTM_HeLa_A485_30min_R1 1 TFNTSTGGLLLPSDTKR 17 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 T(0.013)FNT(0.455)S(0.455)T(0.076)GGLLLPSDTKR 137.09 4.46E-06 353420000 222760 243930 180220 217410 300390 247650 319760 403540 220340 309260 TRUE FALSE FALSE 272312.1935 272455.4916 246890.8776 229286.5578 270482.1169 260616.5711 251440.6638 304571.1823 264560.2169 232167.1735 1.172914281 1.173531501 1.063418544 0.987592493 1.1650317 1.122538415 1.08301557 1.311861525 1.139524649 1 17.82480448 TFNT(ph)STGGLLLPSDTKR ddPTM_HeLa_A486_30min_R1 1 TFNTSTGGLLLPSDTKR 17 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 T(0.035)FNT(0.429)S(0.429)T(0.108)GGLLLPSDTKR 75.773 0.0047036 297050000 112850 94279 66269 59723 112930 106350 141450 128970 89625 146270 TRUE FALSE FALSE 104939.7978 86807.98868 91930.13155 139038.1622 98765.26637 93229.61829 106057.7139 99606.3464 97393.76716 109643.0399 0.957104052 0.791732779 0.838449313 1.268098388 0.900789201 0.85030129 0.967300012 0.908460277 0.888280435 1 16.74245471 -5.088022289 0.006158536 1.852852326 9.26E-05 0.012459979 0.124812918 105649.8749 136.1742185 19809.52618 21167.73261 8.17E-06 5.088022289 -1.852759719 TFNTS(ph)TGGLLLPSDTKR ddPTM_HeLa_A486_30min_R1 1 TFNTSTGGLLLPSDTKR 17 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 0 TFNT(0.035)S(0.93)T(0.035)GGLLLPSDTKR 132.65 6.06E-06 541120000 409920 399120 264560 209010 393790 406070 519000 504120 334120 444370 TRUE FALSE FALSE 381186.7248 367492.2776 367004.7172 486585.8428 344397.1863 355973.212 389140.7106 389342.8809 363081.7906 333096.8596 1.144372016 1.103259508 1.101795789 1.460793846 1.033925047 1.068677779 1.168250914 1.168857855 1.090018654 1 18.34558223 TFQARPLS(ph)ADLTK ddPTM_HeLa_A485_30min_R1 4 TFQARPLSADLTK 13 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 TFQARPLS(1)ADLTK;T(0.222)FQARPLS(0.778)ADLTK;TFQARPLS(1)ADLTK;TFQARPLS(0.999)ADLT(0.001)K ;;; 171.72 1.78E-12 2831470000 1083017 998899 795925 1430976 1504442 1103276 1855395 1810294 978976 1976646 TRUE FALSE FALSE 1323930.395 1115711.549 1090370.779 1509146.595 1354654.472 1161041.825 1458974.701 1366316.558 1175447.504 1483904.53 0.892193783 0.75187556 0.73479847 1.017010573 0.91289867 0.782423533 0.983199843 0.920757724 0.792131488 1 20.50096685 -1.000001892 0.027231613 1.501996198 1.46E-08 0.162528334 0.092169816 3054.478698 6.402487072 117.4345403 262.3712087 0.099999564 1.000001892 -1.501996183 TFQARPLS(ph)ADLTK ddPTM_HeLa_A486_30min_R1 3 TFQARPLSADLTK 13 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 TFQARPLS(1)ADLTK;TFQARPLS(1)ADLTK;TFQARPLS(1)ADLTK ;; 182.28 1.98E-17 1984660000 1441980 1416140 799430 744680 1404190 1695070 2080710 1918930 1024480 1917460 TRUE FALSE FALSE 1340904.648 1303919.909 1108990.705 1733652.674 1228063.397 1485949.498 1560094.35 1482031.529 1113282.751 1437315.535 0.932922949 0.907191133 0.771570806 1.206174032 0.854414613 1.033836664 1.085422311 1.03111077 0.77455696 1 20.45494538 -5.218214107 24.99998909 0.998389123 0.874224642 0.196677812 0.117889292 795.2456039 459941.2395 0.031122197 0.053904805 6.05E-06 5.218214107 -0.12416448 TFS(ph)ATVR ddPTM_HeLa_A485_30min_R1 9 TFSATVR 7 0 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 T(0.445)FS(0.524)AT(0.031)VR;T(0.044)FS(0.948)AT(0.008)VR;TFS(0.721)AT(0.279)VR;TFS(0.998)AT(0.002)VR;TFS(0.97)AT(0.03)VR;TFS(0.904)AT(0.096)VR;TFS(0.99)AT(0.01)VR;TFS(0.999)AT(0.001)VR;T(0.003)FS(0.77)AT(0.227)VR ;;;;;;;; 172.25 0.00030193 1.70E+11 11848310 12676440 13620380 13823800 18285550 12040110 18361680 16463180 12378380 17495830 TRUE FALSE FALSE 14483925.68 14158839.39 18659125.35 14578959.19 16464976.44 12670511.54 14438557.07 12425559.29 14862607.32 13134441.57 1.102743928 1.077993253 1.420625708 1.109979371 1.253572628 0.964678359 1.099289756 0.946028746 1.131575122 1 23.64685153 -6.260228642 24.99991117 1.029377152 1.194630168 0.378901578 0.10539892 121.1985021 2502581.932 0.035109761 0.033297157 5.49E-07 6.260228642 0.165253016 TFS(ph)ATVR ddPTM_HeLa_A486_30min_R1 9 TFSATVR 7 0 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 T(0.001)FS(0.98)AT(0.019)VR;TFS(0.898)AT(0.101)VR;TFS(0.987)AT(0.013)VR;TFS(1)ATVR;TFS(0.981)AT(0.019)VR;TFS(0.986)AT(0.014)VR;TFS(0.897)AT(0.103)VR;TFS(0.877)AT(0.123)VR;TFS(0.915)AT(0.085)VR ;;;;;;;; 186.54 0.00037144 1.39E+11 30067790 32966090 26382310 11533670 37077080 32576310 39550400 37927600 28734770 34498580 TRUE FALSE FALSE 27960193.19 30353736.97 36598246.97 26850966.64 32426526.9 28557376.08 29654471.6 29292313.43 31225523 25859911.02 1.081217687 1.17377577 1.415250306 1.038324015 1.253930335 1.104310686 1.146735253 1.132730635 1.207487643 1 24.62421398 -6.226425168 1.306185925 1.126559355 1.199776445 0.083140576 0.107839586 1.276279743 4.430648198 0.050583708 0.046995905 5.94E-07 6.226425168 0.07321709 TFS(ph)DGLATR ddPTM_HeLa_A486_30min_R1 1 TFSDGLATR 9 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 T(0.006)FS(0.994)DGLATR 202.03 8.10E-10 142960000 226810 211320 149310 79239 232000 244470 272880 317260 186230 341320 TRUE FALSE FALSE 210911.7902 194574.2336 207126.8307 184472.3965 202900.3967 214309.777 204602.5378 245026.8237 202372.5663 255851.2504 0.824353174 0.760497489 0.809559579 0.721014247 0.793040473 0.837634276 0.799693328 0.957692501 0.790977437 1 17.96494576 -8.154737751 0.40508356 1.010467746 0.770740101 0.571716464 0.053257416 1.064176685 0.42715515 0.086169152 0.040063701 7.00E-09 8.154737751 -0.239727645 TFS(ph)LTEVR ddPTM_HeLa_A485_30min_R1 3 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(0.102)FS(0.898)LTEVR;T(0.068)FS(0.932)LTEVR;T(0.021)FS(0.92)LT(0.06)EVR ;; 226.96 5.84E-09 946740000 1064270 1099250 1026320 1085040 1407370 879680 1147280 998190 883190 1164120 TRUE FALSE FALSE 1301013.19 1227797.725 1405998.477 1144312.988 1267247.301 925738.6846 902154.2556 753382.3374 1060438.132 873926.308 1.488698964 1.404921346 1.608829559 1.309392997 1.450061967 1.059286894 1.032300146 0.862066207 1.213418251 1 19.73715211 -6.284146122 3.945582161 1.018279934 1.453994417 0.796514281 0.105875491 0.095091695 3.384336198 0.036658447 0.033547843 5.20E-07 6.284146122 0.435714483 TFS(ph)LTEVR ddPTM_HeLa_A486_30min_R1 1 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(0.014)FS(0.971)LT(0.014)EVR 137.98 0.00045327 175760000 164170 174360 130190 55522 186320 159310 201980 186980 159990 169320 TRUE FALSE FALSE 152662.5308 160543.0786 180603.0546 129258.0219 162950.0082 139655.9519 151442.4677 144408.7357 173858.062 126921.1699 1.202813769 1.264903867 1.422954537 1.018411838 1.28386784 1.100336154 1.193201006 1.137782892 1.369811373 1 16.9535732 -5.255859187 24.98947106 1.167725884 1.293692023 0.226374393 0.116892057 745.6773802 3339318.215 0.030344508 0.050772286 5.55E-06 5.255859187 0.125966139 TFS(ph)PSKPAK ddPTM_HeLa_A485_30min_R1 1 TFSPSKPAK 9 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 T(0.033)FS(0.571)PS(0.396)KPAK 51.013 0.010696 0 374060 391720 319170 451800 470510 387650 519360 518770 377630 551100 TRUE FALSE FALSE 457268.3565 437528.2465 437244.2648 476480.69 423664.3723 407946.7546 408394.4932 391540.8441 453416.8772 413720.9122 1.105258021 1.05754443 1.056858022 1.151695928 1.024034222 0.986043351 0.987125575 0.946388816 1.095948655 1 18.65829836 -5.966523194 12.35307394 0.999447384 1.087794467 0.490887391 0.043266669 0.809440734 296.7515292 0.013133556 0.014880424 1.08E-06 5.966523194 0.088347082 TFS(ph)PSKPAK ddPTM_HeLa_A486_30min_R1 2 TFSPSKPAK 9 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 T(0.001)FS(0.998)PS(0.001)KPAK;TFS(0.595)PS(0.405)KPAK ; 125.72 0.00014189 973570000 850580 706720 342190 476640 668950 916000 1236170 1159230 638320 1318360 TRUE FALSE FALSE 790958.7344 650716.9334 474695.1322 1109642.008 585044.0533 802993.2332 926867.1911 895298.6348 693650.0916 988234.0749 0.800375897 0.658464376 0.480346857 1.122853417 0.592009594 0.812553679 0.937902481 0.90595807 0.701908697 1 19.91449328 -2.764738655 0.067165853 1.257170301 2.89E-07 0.163629856 0.171023331 338.6812578 2.411308037 10.74226369 44.29551221 0.001718942 2.764738655 -1.257170012 TFS(ph)PTYGLLR ddPTM_HeLa_A485_30min_R1 6 TFSPTYGLLR 10 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 T(0.001)FS(0.996)PT(0.004)YGLLR;T(0.014)FS(0.979)PT(0.007)YGLLR;TFS(0.924)PT(0.076)YGLLR;TFS(0.982)PT(0.018)YGLLR;TFS(0.999)PTYGLLR;TFS(0.954)PT(0.046)YGLLR ;;;;; 238.9 7.54E-21 4543390000 2636910 3475520 3202960 2899690 4309470 3282510 4279660 4485660 3085560 3917870 TRUE FALSE FALSE 3223481.532 3881951.831 4387868.19 3058092.722 3880404.035 3454377.148 3365275.679 3385544.852 3704803.59 2941217.112 1.095968577 1.319845385 1.49185457 1.039737158 1.319319142 1.174472001 1.144177921 1.151069344 1.259615815 1 21.48798185 -13.99990634 0.135149527 0.217655348 1.31309243 0.22918304 0.124162634 203.0563343 1.703574719 42.61180158 0.842199603 1.00E-14 13.99990634 1.095437082 TFS(ph)PTYGLLR ddPTM_HeLa_A486_30min_R1 8 TFSPTYGLLR 10 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 TFS(0.998)PT(0.002)YGLLR;TFS(0.988)PT(0.012)YGLLR;T(0.014)FS(0.96)PT(0.026)YGLLR;T(0.004)FS(0.985)PT(0.011)YGLLR;TFS(0.942)PT(0.058)YGLLR;T(0.028)FS(0.882)PT(0.09)YGLLR;TFS(1)PTYGLLR;T(0.004)FS(0.975)PT(0.021)YGLLR ;;;;;;; 338.01 1.28E-66 6307174000 4241586 4546433 3564382 1478737 4972251 4330828 4813150 4753344 3837531 4637449 TRUE FALSE FALSE 3944272.725 4186157.091 4944606.168 3442574.467 4348584.915 3796534.474 3608848.962 3671111.336 4170171.277 3476201.586 1.134650171 1.204233123 1.422416407 0.990326476 1.250958786 1.092150262 1.038158712 1.056069749 1.199634479 1 21.72908032 -5.887090919 1.138168216 1.078645989 1.227823939 0.219511118 0.112263308 0.74642388 2.054980587 0.04956918 0.064337427 1.30E-06 5.887090919 0.149177949 TFS(ph)YIK ddPTM_HeLa_A485_30min_R1 4 TFSYIK 6 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 T(0.001)FS(0.999)YIK;T(0.001)FS(0.999)YIK;TFS(0.999)YIK;TFS(1)YIK ;;; 114.28 0.0079458 382143000 577342 472671 416103 667890 762470 481876 868840 927130 511609 888350 TRUE FALSE FALSE 705769.7361 527945.7618 570036.8152 704375.1395 686555.8096 507106.2822 683205.2362 699749.9138 614284.2335 666900.6939 1.058283104 0.791640744 0.854755169 1.056191943 1.029472328 0.760392495 1.024448231 1.049256539 0.921103006 1 19.34711242 TFS(ph)YIK ddPTM_HeLa_A486_30min_R1 2 TFSYIK 6 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 TFS(1)YIK;TFS(1)YIK ; 114.28 0.0079458 353690000 442260 513220 269940 303300 405100 558250 712150 808130 361330 621420 TRUE FALSE FALSE 411259.8578 472550.5781 374467.9972 706097.7279 354288.5806 489378.7909 533962.5376 624136.4404 392650.3753 465812.3872 0.882887336 1.014465461 0.803903047 1.515841457 0.760582136 1.05059205 1.14630386 1.339888027 0.84293674 1 18.82938948 TFSATVR ddPTM_HeLa_A486_30min_R1 2 TFSATVR 7 0 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 0 0 ; ; 167.24 2.51E-06 0 365420 443800 319120 147259 484990 416690 497330 485480 353120 444660 FALSE FALSE TRUE 339805.945 408631.6717 442691.8103 342826.3941 424158.0318 365283.0244 372892.7738 374946.802 383728.7259 333314.2417 1.019476225 1.225965232 1.328151501 1.028538091 1.27254698 1.095911841 1.118742397 1.124904835 1.151252115 1 18.34652344 TFSFAIPLIEK ddPTM_HeLa_A485_30min_R1 2 TFSFAIPLIEK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 0 ; ; 147.74 0.00062797 16639700 43021 50765 37901 50159 72172 50423 69256 81270 48230 87503 FALSE FALSE TRUE 52590.87303 56701.52515 51922.15709 52899.05916 64986.30227 53063.07031 54458.88983 61338.40507 57909.31861 65690.11247 0.800590394 0.863166815 0.790410537 0.805281909 0.989285903 0.807778649 0.829027197 0.933753997 0.881553044 1 16.00338862 -14 0.092305145 1.488647012 0.738256284 0.441978965 0.056032908 200.7623138 1.279284942 18.96763141 1.243043996 1.00E-14 14 -0.750390728 TFSFAIPLIEK ddPTM_HeLa_A486_30min_R1 1 TFSFAIPLIEK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 0 97.456 0.01863 11922000 10169 11518 10168 5590.5 16551 12188 13544 13858 10870 12692 FALSE FALSE TRUE 9456.205613 10605.27173 14105.32191 13014.96653 14475.01925 10684.36848 10155.14795 10702.83592 11812.22035 9513.840589 0.993941986 1.114720352 1.482610706 1.368003427 1.521469601 1.123034213 1.067407831 1.124975326 1.241582749 1 13.21581214 -6.46773035 24.99139779 1.115522021 1.302603927 0.256392445 0.157097147 466.7463447 211513.7383 0.059716421 0.05266466 3.41E-07 6.46773035 0.187081906 TFSVWYVPEVTGTHK ddPTM_HeLa_A485_30min_R1 4 TFSVWYVPEVTGTHK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 222.16 8.09E-23 697550000 1024310 1013810 981040 1253540 1600000 1042720 1621430 1458330 1077260 1791580 FALSE FALSE TRUE 1252164.226 1132366.261 1343967.52 1322017.716 1440698.382 1097315.207 1274998.235 1100672.281 1293456.201 1344972.078 0.930996447 0.841925479 0.999253102 0.982933206 1.071173451 0.815864675 0.947973758 0.818360693 0.961697438 1 20.35914479 -6.277070887 24.98452544 0.899876522 0.961275391 0.112741291 0.07681984 1757.640651 2809306.273 0.027092159 0.023975731 5.28E-07 6.277070887 0.06139887 TFSVWYVPEVTGTHK ddPTM_HeLa_A486_30min_R1 3 TFSVWYVPEVTGTHK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ;; ;; 218.28 1.19E-22 507740000 1252780 1470520 980090 528570 1707230 1499390 1821350 1725670 1328920 1599100 FALSE FALSE TRUE 1164966.591 1353990.64 1359607.096 1230537.672 1493093.294 1314410.506 1365628.966 1332772.612 1444111.856 1198674.952 0.971878648 1.129572815 1.134258369 1.026581619 1.245619834 1.09655291 1.139282141 1.11187158 1.204756847 1 20.19300906 -4.260480195 23.30128566 1.125614218 0.971878528 0.293957026 0.068965147 36.65374769 890045.9613 0.01587906 0.093165301 5.49E-05 4.260480195 -0.15373569 TFSVWYVPEVTGTHKVTVLFAGQHIAK ddPTM_HeLa_A485_30min_R1 2 TFSVWYVPEVTGTHKVTVLFAGQHIAK 27 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ; ; 151.91 1.84E-17 104161000 94979 332200 88884 54239 126774 244310 309430 809590 73950 90412 FALSE FALSE TRUE 116106.7509 371047.9002 121765.8904 57201.93923 114151.9354 257101.6938 243317.7527 611036.7831 88791.08669 67873.95231 1.710623102 5.466720113 1.794000294 0.842767178 1.68182243 3.787928728 3.584847271 9.002522504 1.308176166 1 16.0505704 -6.480596398 3.362143202 4.352391096 2.373915919 0.058331444 2.365957896 0.534900907 12.26981683 0.908679088 0.747614379 3.31E-07 6.480596398 -1.978475177 TFSVWYVPEVTGTHKVTVLFAGQHIAK ddPTM_HeLa_A486_30min_R1 1 TFSVWYVPEVTGTHKVTVLFAGQHIAK 27 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 81.683 0.00031532 13237000 43499 13335 9896 7117.8 17273 9183.9 16797 18030 7363.9 33498 FALSE FALSE TRUE 40449.94473 12278.28603 13727.99622 16570.59811 15106.45928 8050.883793 12594.21294 13924.96259 8002.208781 25109.88276 1.610917307 0.488982213 0.546716859 0.659923356 0.60161409 0.3206261 0.501563988 0.554561036 0.31868762 1 14.61596767 -4.259902285 24.92294937 0.536344709 1.610917677 0.750746637 0.182293576 57.88312389 938443.6817 0.042393402 0.260791689 5.50E-05 4.259902285 1.074572968 TFSVYS(ph)SSR ddPTM_HeLa_A486_30min_R1 1 TFSVYSSSR 9 0 H0YCB7;H0YEE1;Q9UID3-2;Q9UID3 H0YCB7 VPS51 Vacuolar protein sorting-associated protein 51 homolog 1 0 TFSVYS(0.995)S(0.005)SR 158.79 2.09E-05 160180000 203350 210790 165730 79189 215940 220460 251400 209580 171910 242490 TRUE FALSE FALSE 189096.2151 194086.2327 229905.0944 184355.994 188854.7916 193261.8867 188497.061 161863.2091 186811.2972 181768.9257 1.040311013 1.067763547 1.26482067 1.014232732 1.038982824 1.063228415 1.037014772 0.890488891 1.027740559 1 17.47174606 -6.391678652 0.94867483 0.973515532 1.106846567 0.302054621 0.073038769 0.675002908 1.275727438 0.047465864 0.038231608 4.06E-07 6.391678652 0.133331035 TFTAWCNSHLR ddPTM_HeLa_A485_30min_R1 3 TFTAWCNSHLR 11 0 O43707;F5GXS2;O43707-3;A0A494C1A0;P35609;P35609-2;Q08043;A0A494C166;A0A494C033;A0A494C0Q3;K7EP19;P12814-2;P12814;P12814-3;P12814-4;G3V2N5 O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 ;; ;; 151.26 2.08E-05 340049000 272587 295606 291345 341075 395244 268578 364471 335098 282675 469314 FALSE FALSE TRUE 333223.0377 330174.5503 399125.6394 359707.0636 355892.1196 282640.3288 286598.7934 252914.6901 339405.2797 352322.6569 0.94578941 0.937136865 1.132841251 1.020959216 1.010131232 0.802220133 0.813455473 0.717849633 0.963336513 1 18.42653773 -6.253017833 23.75242092 0.838868147 1.012861757 0.395144105 0.090989712 286.9557471 809339.7815 0.029987177 0.029479851 5.58E-07 6.253017833 0.17399361 TFTAWCNSHLR ddPTM_HeLa_A486_30min_R1 4 TFTAWCNSHLR 11 0 O43707;F5GXS2;O43707-3;A0A494C1A0;P35609;P35609-2;Q08043;A0A494C166;A0A494C033;A0A494C0Q3;K7EP19;P12814-2;P12814;P12814-3;P12814-4;G3V2N5 O43707;P12814-2 ACTN4;ACTN2;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-2;Alpha-actinin-3;Alpha-actinin-1 0 0 ;;; ;;; 186.46 4.46E-10 517842000 527284 612615 479179 242212.9 707605 579391 661110 669212 568884 639324 FALSE FALSE TRUE 490324.1145 564069.1563 664729.9417 563883.872 618850.5827 507911.6292 495693.2855 516847.0364 618195.3232 479233.1091 1.023143237 1.177024595 1.387070152 1.176637969 1.2913352 1.059842527 1.03434691 1.078487748 1.289967891 1 18.87036806 -6.273323907 24.85259918 1.093798115 1.217020345 0.215082367 0.112898572 1143.171976 2390563.325 0.040446571 0.03595644 5.33E-07 6.273323907 0.12322223 TFVLAGSADS(ph)PELGK ddPTM_HeLa_A486_30min_R1 2 TFVLAGSADSPELGK 15 0 O15061 O15061 SYNM Synemin 1 0 TFVLAGSADS(1)PELGK;TFVLAGSADS(1)PELGK ; 315.66 5.19E-78 339280000 765380 691800 391160 388420 723510 775490 986090 944930 549890 961070 TRUE FALSE FALSE 711730.8144 636979.2485 542627.6276 904261.3897 632760.6293 679817.9284 739359.8522 729790.0667 597554.908 720411.8165 0.987949945 0.884187674 0.753218666 1.255200663 0.87833183 0.943651829 1.026301673 1.013017902 0.829462946 1 19.45846232 TFVLTPELS(ph)PGKLQVLPFEK ddPTM_HeLa_A485_30min_R1 2 TFVLTPELSPGKLQVLPFEK 20 1 Q96DY7 Q96DY7 MTBP Mdm2-binding protein 1 0 TFVLTPELS(1)PGKLQVLPFEK;TFVLT(0.023)PELS(0.977)PGKLQVLPFEK ; 161.68 1.39E-13 197726000 97351 87555 55689 157495 140873 108689 208297 218430 81608 208757 TRUE FALSE FALSE 119006.3941 97793.79562 76290.67851 166098.5531 126847.1895 114379.788 163792.6443 164859.7 97985.97705 156717.7218 0.759367816 0.624012361 0.486803137 1.05985814 0.809399142 0.729845908 1.045144368 1.051953143 0.625238652 1 17.2578088 -5.258518342 24.97771601 0.900027525 0.623456232 0.417035689 0.151496274 252.958224 2163029.085 0.041731117 0.068388896 5.51E-06 5.258518342 -0.276571293 TFVLTPELS(ph)PGKLQVLPFEK ddPTM_HeLa_A486_30min_R1 2 TFVLTPELSPGKLQVLPFEK 20 1 Q96DY7 Q96DY7 MTBP Mdm2-binding protein 1 0 TFVLTPELS(1)PGKLQVLPFEK;T(0.001)FVLT(0.051)PELS(0.948)PGKLQVLPFEK ; 244.77 1.12E-46 161879000 329800 286100 127286 226831 278850 354260 550590 500060 222544 595300 TRUE FALSE FALSE 306682.7231 263428.394 176574.548 528074.0314 243874.0328 310555.0031 412826.5585 386207.2542 241834.2931 446233.0052 0.687270371 0.590338211 0.395700331 1.183404242 0.546517245 0.69594808 0.925136764 0.86548339 0.541946226 1 18.7674377 -8.313421829 0.049625337 1.662489442 4.85E-12 0.143416946 0.214362976 157.4645318 3.916779066 71.09635463 58.21495999 4.86E-09 8.313421829 -1.662489442 TFVNITPAEVGVLVGK ddPTM_HeLa_A485_30min_R1 4 TFVNITPAEVGVLVGK 16 0 P07737;I3L3D5 P07737 PFN1 Profilin-1 0 0 ;;; ;;; 310.01 2.87E-82 601215000 702931 655741 611580 819536 957281 734602 1115557 1046910 629798 1121848 FALSE FALSE TRUE 859295.5759 732424.2058 837828.892 864305.1765 861970.7424 773064.6248 877209.1337 790153.681 756192.6818 842191.9397 1.020308478 0.869664231 0.994819414 1.026256766 1.023484911 0.917919762 1.041578638 0.938210928 0.897886392 1 19.68378954 -9.612388021 11.44974434 0.999998016 0.970656565 0.023625045 0.057697619 0 0 0.05553307 0.013468748 2.44E-10 9.612388021 -0.029341451 TFVNITPAEVGVLVGK ddPTM_HeLa_A486_30min_R1 4 TFVNITPAEVGVLVGK 16 0 P07737;I3L3D5 P07737 PFN1 Profilin-1 0 0 ;;; ;;; 369.06 2.73E-138 626890000 536733 620082 412016 244458 764550 638483 787600 724630 557869 733770 FALSE FALSE TRUE 499110.7884 570944.444 571559.6294 569110.5782 668653.0099 559713.4591 590534.1496 559647.5676 606225.5341 550029.216 0.907425958 1.038025667 1.039144127 1.034691543 1.215668169 1.017606779 1.073641422 1.017486983 1.102169697 1 19.06914873 -3.749650265 1.269554168 1.068615122 0.571064597 0.383953544 0.058663507 4.649517713 2.648156483 0.016884431 4.138856468 0.000177971 3.749650265 -0.497550525 TFVNITPAEVGVLVGKDR ddPTM_HeLa_A485_30min_R1 1 TFVNITPAEVGVLVGKDR 18 1 P07737;I3L3D5 P07737 PFN1 Profilin-1 0 0 117.74 1.40E-05 28551000 5580.9 10647 5887.5 3036 11164 13712 21227 40529 6469.6 5342.9 FALSE FALSE TRUE 6822.351951 11892.07403 8065.531249 3201.848992 10052.47296 14429.93912 16691.67804 30589.1992 7767.989377 4011.013359 1.700904819 2.964855255 2.010846269 0.798264355 2.506217771 3.597579421 4.161461593 7.626302001 1.936665048 1 11.96975106 -6.290260408 2.722745925 4.191958745 1.937981536 0.170381917 1.7212171 0.386568934 5.70160395 0.635093042 0.577578789 5.13E-07 6.290260408 -2.25397721 TFWS(ph)PELK ddPTM_HeLa_A485_30min_R1 3 TFWSPELK 8 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EPP6;O15083 X6RM00 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 1 0 TFWS(1)PELK;TFWS(1)PELK;T(0.001)FWS(0.999)PELK ;; 147.74 0.00028461 958865000 1060766 896226 683332 1630878 1230683 929995 1568568 1410914 827377 2073497 TRUE FALSE FALSE 1296729.737 1001031.835 936124.9426 1719968.736 1108151.879 978688.1002 1233430.633 1064885.129 993423.9747 1556612.358 0.833046025 0.643083572 0.601386041 1.104943518 0.711899706 0.628729494 0.79238137 0.68410425 0.638196125 1 20.56997829 -10.84308215 2.682267531 1.099475297 0.737642301 0.236829408 0.141349245 58242480.35 39484136.65 37216917.2 0.035130821 1.44E-11 10.84308215 -0.361832995 TFWS(ph)PELK ddPTM_HeLa_A486_30min_R1 4 TFWSPELK 8 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EPP6;O15083 X6RM00 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 1 0 TFWS(1)PELK;TFWS(1)PELK;TFWS(1)PELK;TFWS(1)PELK ;;; 167.09 2.98E-05 554772000 1277480 1358160 649338 720687 1082463 1464116 1780620 1657310 1063767 1995980 TRUE FALSE FALSE 1187935.249 1250534.455 900779.0635 1677795.758 946690.397 1283488.254 1335090.043 1279976.692 1155975.18 1496173.616 0.79398222 0.835821753 0.602055172 1.121391087 0.632741005 0.857847137 0.892336309 0.855500109 0.772621016 1 20.51284616 -14 0.198090189 1.791919318 0.791352724 0.138656046 0.135830852 281.5983438 2.780684708 88.43283736 0.318082807 1.00E-14 14 -1.000566594 TFWS(ph)PELKK ddPTM_HeLa_A485_30min_R1 2 TFWSPELKK 9 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EPP6;O15083 X6RM00 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 1 0 TFWS(1)PELKK;TFWS(1)PELKK ; 99.752 0.001157 5988330000 7178750 5478330 3390420 10637610 8485330 6951780 12689480 12367320 5483250 14391810 TRUE FALSE FALSE 8775638.171 6118973.038 4644677.445 11218715.7 7640500.751 7315764.451 9978268.934 9334215.379 6583687.98 10804196.63 0.812243471 0.566351507 0.429895679 1.038366487 0.70717898 0.677122483 0.923554918 0.863943493 0.609363954 1 23.36508847 -13.99999983 0.045480427 2.088453149 0.153585814 0.181318825 0.170265867 1109.472771 3.741123748 154.9489708 39.52591857 1.00E-14 13.99999983 -1.934867335 TFWS(ph)PELKK ddPTM_HeLa_A486_30min_R1 2 TFWSPELKK 9 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EPP6;O15083 X6RM00 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 1 0 T(0.001)FWS(0.999)PELKK;TFWS(1)PELKK ; 128.08 0.00015666 10581500000 4014490 3245310 1299310 2195010 3086100 4014350 5838200 5299910 2553060 5607380 TRUE FALSE FALSE 3733094.982 2988139.816 1802437.629 5110094.21 2699012.561 3519100.312 4377420.61 4093236.189 2774361.296 4203255.55 0.888143711 0.710910812 0.428819425 1.215746735 0.642124308 0.837232062 1.041435753 0.973825203 0.660050588 1 22.00307574 -5.250920104 24.99573999 0.900244227 0.679453306 0.235891902 0.192481258 1121.821901 2665650.567 0.051596527 0.088167969 5.61E-06 5.250920104 -0.220790921 TGADTTAAGPLFQQRPYPS(ph)PGAVLR ddPTM_HeLa_A485_30min_R1 4 TGADTTAAGPLFQQRPYPSPGAVLR 25 1 H7C053;O60828-5;O60828-4;O60828-2;O60828 H7C053 PQBP1 Polyglutamine-binding protein 1 1 0 TGADTTAAGPLFQQRPYPS(1)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR ;;; 180.11 1.69E-20 2637100000 554063 618145 595372 621469 888170 588829 854550 883910 544188 825060 TRUE FALSE FALSE 677312.4029 690431.6806 815624.8783 655418.2778 799740.6762 619659.1759 671968.4115 667129.6866 653401.54 619387.7261 1.093519252 1.114700294 1.316824412 1.058171239 1.291179406 1.000438255 1.084891391 1.077079281 1.054915221 1 19.24048327 -6.283204553 24.99394641 1.050871444 1.17293778 0.399161573 0.080340959 892.6828784 1025105.374 0.027194714 0.024003263 5.21E-07 6.283204553 0.122066336 TGADTTAAGPLFQQRPYPS(ph)PGAVLR ddPTM_HeLa_A486_30min_R1 4 TGADTTAAGPLFQQRPYPSPGAVLR 25 1 H7C053;O60828-5;O60828-4;O60828-2;O60828 H7C053 PQBP1 Polyglutamine-binding protein 1 1 0 TGADTTAAGPLFQQRPYPS(1)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR;TGADTTAAGPLFQQRPYPS(1)PGAVLR ;;; 206.94 6.60E-29 2219300000 1701690 1698490 1158498 722484 1817660 1604870 2027100 1922460 1403055 1896370 TRUE FALSE FALSE 1582410.319 1563895.467 1607099.451 1681979.264 1589672.134 1406877.457 1519898.14 1484757.825 1524672.937 1421506.609 1.113192376 1.100167567 1.130560661 1.183237035 1.11830091 0.989708699 1.069216372 1.0444959 1.072575342 1 20.43898938 -6.128747236 6.669458213 1.040402919 1.131898906 0.685406629 0.031791975 0.15472423 7.7268914 0.010721303 0.010743293 7.43E-07 6.128747236 0.091495987 TGASSLLNKSS(ph)PVKKPSLLK ddPTM_HeLa_A485_30min_R1 1 TGASSLLNKSSPVKKPSLLK 20 3 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 TGASSLLNKS(0.136)S(0.864)PVKKPS(0.001)LLK 114.15 0.00011142 398420000 426730 244090 111680 600160 428120 429030 888480 883790 298030 798110 TRUE FALSE FALSE 521654.6163 272634.2022 152995.0794 632945.2211 385494.8696 451493.3474 698648.9898 667039.1168 357841.8873 599155.8651 0.87064927 0.455030516 0.25535105 1.056394935 0.643396639 0.753549074 1.166055496 1.113298151 0.597243402 1 19.19257183 -5.817766798 1.118482858 0.952001985 0.557797769 0.24759644 0.249224891 0.665136975 1.771461051 0.111604858 0.156728877 1.52E-06 5.817766798 -0.394204216 TGASSLLNKSS(ph)PVKKPSLLK ddPTM_HeLa_A486_30min_R1 1 TGASSLLNKSSPVKKPSLLK 20 3 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 TGASSLLNKS(0.055)S(0.945)PVKKPSLLK 170.51 7.83E-13 645120000 840740 502040 173800 501630 502940 822660 1276800 1096500 390650 1468700 TRUE FALSE FALSE 781808.4676 462256.522 241100.0145 1167819.991 439856.5755 721168.5734 957331.1354 846850.8864 424511.8565 1100927.96 0.7101359 0.419878992 0.218997085 1.06075968 0.399532568 0.655055189 0.869567465 0.769215532 0.385594582 1 20.07028864 -5.24456747 24.99960752 0.713022768 0.446691532 0.229037145 0.2370133 1312.860603 1945301.967 0.062687645 0.108228438 5.69E-06 5.24456747 -0.266331236 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK ddPTM_HeLa_A485_30min_R1 6 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 1 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(1)PS(0.997)PEPIY(0.003)NSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(0.998)PEPIYNS(0.002)EGK;TGDLGIPPNPEDRS(1)PS(0.998)PEPIY(0.002)NSEGK;TGDLGIPPNPEDRS(0.879)PS(0.644)PEPIY(0.198)NS(0.279)EGK ;;;;; 202.81 2.84E-28 14645700000 3760681 3270245 2584006 6021910 5017875 3712797 6248239 5453695 3535986 8013820 TRUE FALSE FALSE 4597231.514 3652671.705 3539937.349 6350871.695 4518277.746 3907193.31 4913251.694 4116167.75 4245625.956 6016122.157 0.764151956 0.607147197 0.588408489 1.055642078 0.751028258 0.649453786 0.81668084 0.684189523 0.70570807 1 22.52040243 -11.50955741 2.129028453 4.21157316 0.735875899 0.282945502 0.126165392 8144974.644 457077.6557 126611488.9 0.033006372 3.09E-12 11.50955741 -3.475697261 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK ddPTM_HeLa_A486_30min_R1 6 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 1 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(0.997)PEPIY(0.002)NS(0.001)EGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGK;TGDLGIPPNPEDRS(0.813)PS(0.856)PEPIY(0.321)NS(0.01)EGK ;;;;; 190.59 1.91E-20 17953530000 3127380 2974550 1673512 1561291 2870820 3566870 4446400 4073370 2618590 4764150 TRUE FALSE FALSE 2908166.812 2738835.825 2321540.665 3634764.351 2510734.986 3126825.845 3333863.691 3145952.572 2845571.49 3571175.831 0.814344336 0.766928305 0.65007739 1.017806046 0.70305555 0.875573199 0.933547898 0.880929061 0.796816406 1 21.76796774 -13.55032606 0.026446364 2.139142582 6.60E-07 0.261125998 0.098548643 2308.909443 4.940905423 288.1912746 137.0019797 2.82E-14 13.55032606 -2.139141922 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGKR ddPTM_HeLa_A485_30min_R1 7 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(0.996)PS(0.991)PEPIY(0.003)NS(0.01)EGKR;TGDLGIPPNPEDRS(1)PS(0.993)PEPIY(0.003)NS(0.005)EGKR;TGDLGIPPNPEDRS(0.994)PS(0.962)PEPIY(0.033)NS(0.011)EGKR;TGDLGIPPNPEDRS(0.996)PS(0.972)PEPIY(0.003)NS(0.029)EGKR;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGKR;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGKR;TGDLGIPPNPEDRS(0.977)PS(0.737)PEPIY(0.008)NS(0.278)EGKR ;;;;;; 156.67 8.32E-10 14259470000 3045213 3288260 2602707 3863041 4775344 3877605 6208420 6970830 3125968 5286290 TRUE FALSE FALSE 3722610.126 3672793.403 3565556.627 4074069.148 4299893.984 4080630.402 4881940.349 5261223.013 3753321.105 3968515.19 0.938036003 0.925483015 0.898461126 1.026597847 1.083501959 1.028251174 1.230167989 1.325740928 0.94577466 1 21.9201679 -5.70349611 1.28490848 1.137109081 0.91631792 0.355035792 0.105949077 0.442121282 1.527517686 0.041724881 0.063302787 1.98E-06 5.70349611 -0.220791162 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGKR ddPTM_HeLa_A486_30min_R1 6 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGKR;TGDLGIPPNPEDRS(1)PS(0.999)PEPIYNSEGKR;TGDLGIPPNPEDRS(0.979)PS(0.994)PEPIY(0.018)NS(0.009)EGKR;TGDLGIPPNPEDRS(0.995)PS(0.972)PEPIY(0.006)NS(0.027)EGKR;TGDLGIPPNPEDRS(0.996)PS(0.999)PEPIY(0.003)NS(0.002)EGKR;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGKR ;;;;; 138.84 9.31E-07 12334300000 3206570 2934030 1746180 1540610 3354090 3202390 4551970 4407640 2443520 4504190 TRUE FALSE FALSE 2981806.002 2701526.777 2422347.66 3586617.938 2933388.757 2807311.681 3413018.96 3404116.59 2655326.281 3376311.507 0.883154885 0.800141448 0.717453841 1.062288812 0.868814608 0.831472948 1.010872058 1.008235343 0.786457729 1 21.68701659 -5.249256851 24.9985764 0.934325814 0.800239204 0.326127614 0.090814882 942.769928 1934562.689 0.024611527 0.042227566 5.63E-06 5.249256851 -0.13408661 TGDLGIPPNPEDRS(ph)PSPEPIYNS(ph)EGKR ddPTM_HeLa_A485_30min_R1 1 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(0.985)PS(0.414)PEPIY(0.038)NS(0.564)EGKR 96.957 0.0077773 1511300000 299310 335730 269770 363370 486020 397620 639540 709480 340190 562810 TRUE FALSE FALSE 365890.4769 374990.703 369569.1491 383219.983 437630.1423 418438.7684 502897.0544 535478.9176 408463.0126 422511.8248 0.865988726 0.88752712 0.874695399 0.907004161 1.035781999 0.9903599 1.190255574 1.267370251 0.966749304 1 18.68863219 -6.004635128 1.335417406 1.118181062 0.873644632 0.538780052 0.087262805 0.305736097 1.127887849 0.037355634 0.042021136 9.89E-07 6.004635128 -0.244536431 TGDLGIPPNPEDRS(ph)PSPEPIYNS(ph)EGKR ddPTM_HeLa_A486_30min_R1 1 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-5;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-6 Q15637-5;Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(0.885)PS(0.305)PEPIY(0.046)NS(0.764)EGKR 94.669 0.0095326 1144300000 398570 319960 208690 215070 385950 341140 537300 502510 290160 561420 TRUE FALSE FALSE 370632.3012 294605.2043 289500.3569 500693.829 337540.5522 299053.6153 402861.857 388099.4427 315311.3024 420836.7778 0.88070321 0.700046241 0.68791601 1.189757777 0.802069995 0.710616636 0.957287667 0.922208949 0.749248448 1 18.68290126 -14 0.124110842 1.452557168 0.782400724 0.081587638 0.146985153 426.8566556 3.391991789 49.54378922 1.328845021 1.00E-14 14 -0.670156445 TGEDEDEEDNDALLKENES(ph)PDVRR ddPTM_HeLa_A486_30min_R1 1 TGEDEDEEDNDALLKENESPDVRR 24 2 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 TGEDEDEEDNDALLKENES(1)PDVRR 218.55 2.49E-38 797040000 188430 150130 54550 111430 107590 178430 232020 187930 99828 400150 TRUE FALSE FALSE 175222.0301 138233.152 75673.2209 259414.6714 94095.05896 156417.1207 173966.1419 145142.4415 108481.1714 299949.8355 0.584171116 0.460854235 0.252286256 0.864860189 0.313702652 0.521477601 0.579984122 0.483889052 0.36166438 1 18.19436171 -10.39477419 5.032770186 1.000456515 0.492521262 0.469116521 0.162300335 0.000790369 9.50E-05 0.149400277 0.03620335 4.03E-11 10.39477419 -0.507935253 TGEMSGPVFTDS(ph)GIHIILR ddPTM_HeLa_A485_30min_R1 2 TGEMSGPVFTDSGIHIILR 19 0 K7EN45;Q13526 K7EN45 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 1 0 TGEMSGPVFT(0.004)DS(0.996)GIHIILR;TGEMSGPVFT(0.001)DS(0.999)GIHIILR ; 182.15 3.26E-18 81796000 63832 64576 59415 67220 90346 61347 90813 95360 58247 103582 TRUE FALSE FALSE 78031.20818 72127.60146 81395.08096 70892.05839 81350.83502 64559.03406 71410.06068 71972.81048 69936.63863 77760.91369 1.003475969 0.927555992 1.046735141 0.911666993 1.046166141 0.830224736 0.918328467 0.925565391 0.899380361 1 16.24675755 -6.253247054 24.98930749 0.910274419 0.982931043 0.290873724 0.05613617 766.3400386 2337592.749 0.017404784 0.017116454 5.58E-07 6.253247054 0.072656623 TGEMSGPVFTDS(ph)GIHIILR ddPTM_HeLa_A486_30min_R1 1 TGEMSGPVFTDSGIHIILR 19 0 K7EN45;Q13526 K7EN45 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 1 0 TGEMSGPVFT(0.001)DS(0.999)GIHIILR 151.82 9.14E-09 26980000 25705 28378 22502 14236 32634 28397 33849 34011 24778 33895 TRUE FALSE FALSE 23903.21224 26129.22393 31215.37702 33142.12745 28540.73942 24893.66686 25379.62218 26267.43775 26925.77699 25407.47138 0.940794614 1.028407099 1.228590463 1.304424472 1.123320735 0.979777424 0.998903897 1.033846988 1.059758234 1 14.63296518 -6.206297014 7.349807359 1.015694805 1.135914317 0.248618058 0.095302871 0.430025106 50.4993349 0.035391951 0.035287889 6.22E-07 6.206297014 0.120219512 TGEPS(ph)PPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_HeLa_A485_30min_R1 2 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 T(0.125)GEPS(0.875)PPHDILHEPPDVVS(1)DDEKDHGK;T(0.014)GEPS(0.986)PPHDILHEPPDVVS(1)DDEKDHGK ; 183.06 1.57E-20 820720000 431450 241058 135756 997410 411370 352800 773990 677840 247295 1269660 TRUE FALSE FALSE 527424.564 269247.6362 185977.7937 1051895.983 370412.5584 371272.0625 608620.7136 511598.6772 296924.8382 953157.1284 0.553344825 0.282479801 0.195117665 1.103591372 0.38861647 0.389518214 0.638531356 0.536741175 0.311517198 1 19.86235454 -11.07989707 2.608803367 1.820686398 0.492146184 0.285914852 0.24229971 29698088.18 11838155.59 144670450 0.061828947 8.32E-12 11.07989707 -1.328540214 TGEPS(ph)PPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_HeLa_A486_30min_R1 2 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 T(0.086)GEPS(0.914)PPHDILHEPPDVVS(1)DDEKDHGK;T(0.057)GEPS(0.943)PPHDILHEPPDVVS(1)DDEKDHGK ; 184.13 1.45E-20 1072410000 876910 705450 256540 810060 573780 1118280 1705170 1418400 612090 2179370 TRUE FALSE FALSE 815443.1374 649547.5728 355879.1584 1885860.618 501811.1621 980317.9834 1278518.431 1095461.283 665146.454 1633641.567 0.499156702 0.397607153 0.217844089 1.154390692 0.307173356 0.60008144 0.782618695 0.670564037 0.407155687 1 20.63966005 -14 0.099022126 2.253371523 0.288826229 0.21230377 0.255022732 308.4336056 2.07880622 81.90792101 4.43683554 1.00E-14 14 -1.964545294 TGEPSPPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_HeLa_A485_30min_R1 1 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 TGEPSPPHDILHEPPDVVS(1)DDEKDHGK 250.43 8.96E-51 349310000 304720 192350 124950 695880 330220 280860 632110 486160 206960 995970 TRUE FALSE FALSE 372503.9127 214843.6593 171174.2046 733894.1623 297342.1373 295565.3953 497054.5346 366928.4977 248494.9737 747693.0085 0.498204355 0.287342073 0.228936479 0.98154477 0.397679441 0.395303142 0.664784248 0.490747531 0.332348933 1 19.51208652 -10.42494262 3.026776541 1.009458283 0.478735605 0.369946131 0.20541317 59879914.15 72513659.77 4862624.525 0.053209239 3.76E-11 10.42494262 -0.530722678 TGEPSPPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_HeLa_A486_30min_R1 2 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 TGEPSPPHDILHEPPDVVS(1)DDEKDHGK;TGEPSPPHDILHEPPDVVS(1)DDEKDHGK ; 316.89 6.94E-109 598620000 727190 560650 219736 519630 488000 946430 1349990 1145370 489850 1688340 TRUE FALSE FALSE 676217.7362 516222.0521 304823.6639 1209724.901 426790.4896 829669.0892 1012208.223 884594.2543 532310.5924 1265568.675 0.534319275 0.407897305 0.240859046 0.95587456 0.337232185 0.655570184 0.799805055 0.698969777 0.420609804 1 20.27135437 -13.99999998 0.076176534 2.367915281 0.119615938 0.304634947 0.206058783 338.4287828 1.833882253 80.07343382 8.32746297 1.00E-14 13.99999998 -2.248299343 TGEYKPS(ph)PVNTLTR ddPTM_HeLa_A485_30min_R1 2 TGEYKPSPVNTLTR 14 1 A0A087X2C4;H0YAH0 A0A087X2C4 PCDH7 1 0 TGEYKPS(1)PVNTLTR;TGEYKPS(1)PVNTLTR ; 149.95 2.86E-08 819880000 891100 618290 322280 1399360 503320 715350 1210770 945450 624090 2790200 TRUE FALSE FALSE 1089322.121 690593.6371 441504.7832 1475803.493 453207.6935 752804.6199 952079.0984 713576.9051 749339.1385 2094654.49 0.520048593 0.329693341 0.210776902 0.704557005 0.216363938 0.359393219 0.454527992 0.340665684 0.357738778 1 20.99828086 -10.28557465 3.578079855 1.001706198 0.385213954 0.638851864 0.137982642 328677777.5 503764076.8 6039982.729 0.032522781 5.18E-11 10.28557465 -0.616492245 TGEYKPS(ph)PVNTLTR ddPTM_HeLa_A486_30min_R1 2 TGEYKPSPVNTLTR 14 1 A0A087X2C4;H0YAH0 A0A087X2C4 PCDH7 1 0 TGEYKPS(1)PVNTLTR;TGEYKPS(1)PVNTLTR ; 130.56 9.50E-06 684860000 796350 660990 390160 344570 863190 1078830 1033580 887750 890270 1952290 TRUE FALSE FALSE 740529.9774 608610.7451 541240.4008 802176.3736 754920.6613 945734.9233 774967.3519 685628.7044 967439.3204 1463423.877 0.506025622 0.415881383 0.369845271 0.548150393 0.515859194 0.646248116 0.529557679 0.468509989 0.66107936 1 20.48091627 -14 0.1763505 2.985759652 0.406631543 0.825637763 0.070135102 54.81984146 0.523889762 37.95956881 0.244308257 1.00E-14 14 -2.579128109 TGGIGDSRPPSFHPHAGGGS(ph)QENLDNDTETDSLVSAQR ddPTM_HeLa_A485_30min_R1 1 TGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQR 38 1 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 0 TGGIGDSRPPSFHPHAGGGS(1)QENLDNDTETDSLVSAQR 243.17 7.34E-52 462120000 57710 69615 79592 30614 104120 56774 80073 96636 65185 67303 TRUE FALSE FALSE 70547.3904 77755.86868 109036.3929 32286.3653 93753.44721 59746.59885 62964.74941 72935.86948 78267.03159 50525.60072 1.396270196 1.538940014 2.158042484 0.639010023 1.855563237 1.182501504 1.246194969 1.443542846 1.549056923 1 15.62472695 -5.240937486 24.99888348 1.31147536 1.68186967 0.224301142 0.356199049 1380.728922 1683582.885 0.092442635 0.159881621 5.74E-06 5.240937486 0.370394311 TGGIGDSRPPSFHPHAGGGS(ph)QENLDNDTETDSLVSAQR ddPTM_HeLa_A486_30min_R1 1 TGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQR 38 1 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 0 TGGIGDS(0.001)RPPSFHPHAGGGS(0.999)QENLDNDTETDSLVSAQR 117.73 9.64E-06 255530000 75701 76730 64723 5737.6 108000 51834 71183 57728 74202 27300 TRUE FALSE FALSE 70394.75082 70649.63535 89785.47894 13357.42276 94453.63294 45439.24809 53372.2605 44584.59459 80633.8891 20463.90231 3.439947561 3.452402885 4.387505257 0.652730968 4.615621768 2.220458611 2.60811744 2.178694656 3.940298771 1 14.32079366 -9.943184648 0.213068026 8.43E-28 3.497910107 0.215933268 1.138688046 28.3917263 1.406589247 24.46142706 2.84910293 1.14E-10 9.943184648 3.497910107 TGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_HeLa_A485_30min_R1 3 TGGPAYGPSSDVSTASETESEKR 23 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TGGPAYGPSSDVST(0.001)AS(0.998)ETESEKR;TGGPAYGPSSDVST(0.008)AS(0.991)ET(0.001)ESEKR;TGGPAYGPSSDVST(0.001)AS(0.998)ET(0.001)ESEKR ;; 245.2 3.47E-49 739930000 618640 481480 327515 875380 593630 469070 829230 801590 449370 1054880 TRUE FALSE FALSE 756254.3337 537784.8977 448676.4275 923199.7928 534526.1128 493629.7799 652058.2363 604998.7957 539554.4371 791917.8296 0.954965661 0.679091792 0.566569423 1.165777254 0.674976737 0.623334595 0.823391281 0.76396663 0.68132629 1 19.59499122 -10.03669528 4.55264711 1.000009121 0.767567844 0.14391406 0.167886934 50052372 55172343.17 3848.370319 0.039922042 9.19E-11 10.03669528 -0.232441277 TGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_HeLa_A486_30min_R1 1 TGGPAYGPSSDVSTASETESEKR 23 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TGGPAYGPSSDVS(0.003)T(0.011)AS(0.985)ET(0.001)ESEKR 197.89 6.85E-29 601140000 176450 167840 71023 78375 127700 193990 243920 198210 132520 280590 TRUE FALSE FALSE 164081.7662 154539.7471 98525.00766 182460.9609 111682.6752 170057.4861 182888.6361 153081.9099 144006.9403 210328.4377 0.780121642 0.73475441 0.468434077 0.86750495 0.530991798 0.808533016 0.869538319 0.727823168 0.684676508 1 17.6822844 TGGS(ph)PSVR ddPTM_HeLa_A485_30min_R1 5 TGGSPSVR 8 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 T(0.179)GGS(0.819)PS(0.002)VR;T(0.122)GGS(0.868)PS(0.009)VR;T(0.205)GGS(0.792)PS(0.003)VR;T(0.441)GGS(0.532)PS(0.027)VR;T(0.2)GGS(0.78)PS(0.02)VR ;;;; 117.01 0.00091013 2283971000 3450200 4888460 4034583 4261338 4796216 4446920 5526316 5781760 4285708 5789151 TRUE FALSE FALSE 4217685.087 5460122.873 5527143.145 4494124.105 4318687.895 4679753.855 4345573.441 4363774.295 5145810.285 4346022.197 0.970470213 1.256349514 1.271770574 1.034077577 0.993710501 1.076790141 0.999896743 1.004084677 1.184027612 1 22.05126411 -5.290474043 24.31352617 1.039676803 1.175212045 0.27116077 0.093063619 586.3652258 491018.9732 0.025908645 0.038437371 5.12E-06 5.290474043 0.135535242 TGGS(ph)PSVR ddPTM_HeLa_A486_30min_R1 3 TGGSPSVR 8 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 T(0.172)GGS(0.826)PS(0.002)VR;T(0.105)GGS(0.881)PS(0.014)VR;T(0.091)GGS(0.904)PS(0.005)VR ;; 114.51 0.0010233 1842550000 2350020 2250600 1973360 876230 2468090 2520840 2533560 2296210 2350760 2766290 TRUE FALSE FALSE 2185295.734 2072254.259 2737497.84 2039907.722 2158519.138 2209844.391 1899636.491 1773413.109 2554525.77 2073592.978 1.053869181 0.999354396 1.320171253 0.983755126 1.040956041 1.065707887 0.916108663 0.855236841 1.231932108 1 20.98370131 TGHILHPEYLQPLPSTPVS(ph)PIELDAK ddPTM_HeLa_A485_30min_R1 3 TGHILHPEYLQPLPSTPVSPIELDAK 26 0 Q96F45;Q96F45-3;Q96F45-2 Q96F45 ZNF503 Zinc finger protein 503 1 0 TGHILHPEYLQPLPSTPVS(1)PIELDAK;TGHILHPEYLQPLPSTPVS(1)PIELDAK;TGHILHPEYLQPLPSTPVS(1)PIELDAK ;; 196.93 2.51E-24 2566300000 892310 939120 602445 1275100 1098455 932253 1415620 1373720 733433 1590500 TRUE FALSE FALSE 1090801.281 1048941.915 825314.4753 1344755.484 989088.9633 981064.3255 1113161.222 1036813.016 880626.2757 1194017.621 0.91355543 0.878497852 0.691207953 1.126244254 0.828370491 0.821649788 0.932282073 0.868339795 0.73753206 1 20.1873927 TGHILHPEYLQPLPSTPVS(ph)PIELDAK ddPTM_HeLa_A486_30min_R1 4 TGHILHPEYLQPLPSTPVSPIELDAK 26 0 Q96F45;Q96F45-3;Q96F45-2 Q96F45 ZNF503 Zinc finger protein 503 1 0 TGHILHPEYLQPLPS(0.001)T(0.067)PVS(0.932)PIELDAK;TGHILHPEYLQPLPSTPVS(0.999)PIELDAK;TGHILHPEYLQPLPSTPVS(1)PIELDAK;TGHILHPEYLQPLPSTPVS(1)PIELDAK ;;; 189.2 1.55E-20 2040290000 1076900 861232 429263 297863 812914 946409 1218840 1141480 740666 1377020 TRUE FALSE FALSE 1001414.871 792984.8398 595485.1297 693440.1172 710950.746 829650.68 913873.3404 881589.9223 804867.5252 1032205.229 0.970170314 0.768243386 0.576905748 0.671804499 0.688768789 0.803765236 0.885360115 0.854083953 0.779755326 1 19.97729841 -6.503153503 3.963461751 0.866568262 0.725276712 0.283558386 0.106790748 0.318875543 11.23497976 0.042988435 0.035183423 3.14E-07 6.503153503 -0.14129155 TGHSLLHTLYGR ddPTM_HeLa_A485_30min_R1 2 TGHSLLHTLYGR 12 0 D6RFM5;P31040-2;P31040;A0A494C1T6 D6RFM5 SDHA "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial" 0 0 ; ; 89.403 0.0059432 20422100 3998 6780.6 5320.4 4735.4 7363.1 4878.5 6237.6 6363.6 5524.5 8906.8 FALSE FALSE TRUE 4887.341307 7573.532187 7288.63736 4994.082911 6630.003911 5133.930716 4904.885803 4802.917122 6633.216476 6686.498678 0.730926834 1.132660388 1.090052913 0.746890585 0.991550919 0.767805538 0.733550703 0.718300766 0.992031375 1 12.70703524 -5.261797647 24.99997398 0.8358999 0.999358078 0.145908883 0.14506824 50.78538853 3543913.457 0.039554418 0.063067283 5.47E-06 5.261797647 0.163458178 TGHSLLHTLYGR ddPTM_HeLa_A486_30min_R1 1 TGHSLLHTLYGR 12 0 D6RFM5;P31040-2;P31040;A0A494C1T6 D6RFM5 SDHA "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial" 0 0 59.198 0.035922 5242500 8437.3 7374.3 3986.3 11100 8077.3 9826.7 12772 13228 4661.3 20483 FALSE FALSE TRUE 7845.88884 6789.933611 5529.902117 25841.36096 7064.169716 8614.381665 9576.310512 10216.27317 5065.345237 15353.92348 0.511002211 0.442227918 0.360162152 1.683046096 0.460088897 0.561054096 0.623704457 0.665385182 0.329905593 1 13.90631974 TGIS(ph)ECLPR ddPTM_HeLa_A485_30min_R1 1 TGISECLPR 9 0 H3BV68;C9J7I2;F5H7K1;E7EWW0;Q7Z3J2-2;Q7Z3J2;H3BVG8 H3BV68 C16orf62 UPF0505 protein C16orf62 1 0 T(0.001)GIS(0.999)ECLPR 70.268 0.0092827 0 92203 90021 100410 92437 167080 70225 103060 88195 90100 141240 TRUE FALSE FALSE 112713.2393 100548.1729 137555.8374 97486.59925 150444.9285 73901.87241 81040.38908 66565.03797 108182.2436 106031.4673 1.063016877 0.948286159 1.297311457 0.91941196 1.418870571 0.696980569 0.76430508 0.627785691 1.02028432 1 16.69413296 -6.287387616 24.99330708 0.795009842 1.116983421 0.416287245 0.180373439 700.2269153 674455.1883 0.06020613 0.05311482 5.16E-07 6.287387616 0.321973578 TGKEYIPGQPPLSQSSDS(ph)SPTR ddPTM_HeLa_A485_30min_R1 1 TGKEYIPGQPPLSQSSDSSPTR 22 1 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 TGKEYIPGQPPLSQS(0.001)S(0.001)DS(0.456)S(0.456)PT(0.086)R 67.778 0.0037846 186540000 28502 167920 51906 17240 120540 207730 276940 959990 39750 34876 TRUE FALSE FALSE 34842.17157 187556.7833 71108.18939 18181.77755 108538.6144 218606.4216 217769.5066 724550.9473 47727.46039 26182.05505 1.330765347 7.163562332 2.715913219 0.69443661 4.145534572 8.349475288 8.317510074 27.67357054 1.822907343 1 14.67629072 -1.431809859 14.0855114 6.880584133 4.227715421 0 7.68574012 0 0 1.821437135 0 0.036999013 1.431809859 -2.652868712 TGKQDGLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 TGKQDGLSPK 10 1 A1X283 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 T(0.002)GKQDGLS(0.998)PK 57.679 0.016748 231780000 416160 247570 82987 345670 252690 352690 597340 523960 193650 937920 TRUE FALSE FALSE 386989.3331 227951.6516 115121.7889 804737.2292 220995.264 309178.6937 447879.214 404665.746 210435.7379 703058.7272 0.55043671 0.324228465 0.1637442 1.144623057 0.314334003 0.439762258 0.637043815 0.575578867 0.299314595 1 19.42328568 -10.55536618 3.016228239 1.022780139 0.498426841 0.2570241 0.257832625 293878655 329199283.9 54370549.57 0.06237731 2.78E-11 10.55536618 -0.524353298 TGLLFS(ph)PDVDEKLPK ddPTM_HeLa_A485_30min_R1 1 TGLLFSPDVDEKLPK 15 1 Q6P4F7-3;Q6P4F7;H3BQ41;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 TGLLFS(1)PDVDEKLPK 189.9 2.07E-18 128740000 228640 138680 95004 402600 264060 221940 383510 354530 154230 605310 TRUE FALSE FALSE 279500.1792 154897.4196 130149.933 424593.0186 237769.2592 233560.4352 301569.9555 267580.9616 185182.5463 454417.3569 0.615073731 0.340870386 0.286410567 0.93436796 0.523239827 0.513977804 0.663640926 0.588844061 0.407516446 1 18.79365842 -11.36635204 2.144428113 3.787577197 0.543328719 0.38563288 0.173583434 5645307.388 652763.7613 76197029.92 0.044103725 4.30E-12 11.36635204 -3.244248478 TGLLFS(ph)PDVDEKLPK ddPTM_HeLa_A486_30min_R1 2 TGLLFSPDVDEKLPK 15 1 Q6P4F7-3;Q6P4F7;H3BQ41;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 TGLLFS(1)PDVDEKLPK;TGLLFS(1)PDVDEKLPK ; 214.26 1.05E-26 251370000 524910 442700 165501 366260 400160 612870 874160 755000 328220 1025580 TRUE FALSE FALSE 488116.5196 407618.8397 229587.4195 852671.7898 349968.2015 537260.3306 655435.9221 583102.9815 356670.3739 768768.0926 0.634933375 0.53022341 0.298643273 1.109140452 0.455232475 0.698858779 0.852579508 0.758490092 0.463950543 1 19.55218893 -14 0.097312583 1.997828201 0.422391298 0.183401162 0.21948971 337.8089497 2.245754212 70.66522732 4.017587222 1.00E-14 14 -1.575436904 TGLSLWDT(ph)SPSYIDK ddPTM_HeLa_A486_30min_R1 1 TGLSLWDTSPSYIDK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 TGLSLWDT(0.758)S(0.242)PSYIDK 161.21 3.46E-11 37512000 126800 141810 76191 69403 142320 161150 192240 174350 120040 194370 TRUE FALSE FALSE 117911.9748 130572.4591 105694.1957 161573.6914 124468.8985 141268.9515 144139.5187 134654.311 130445.1639 145698.4869 0.809287573 0.896182671 0.725430977 1.108959296 0.854290948 0.969597931 0.989300039 0.924198418 0.895308981 1 17.15262637 -5.245625523 24.99175045 0.956764766 0.818888645 0.462493024 0.075096514 771.4074286 1219107.592 0.019384165 0.03343107 5.68E-06 5.245625523 -0.137876121 TGLSTSGNVEKNK(ac)AVK(ac)R ddPTM_HeLa_A486_30min_R1 1 TGLSTSGNVEKNKAVKR 17 3 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 0 2 TGLSTSGNVEKNK(1)AVK(1)R 68.257 0.015443 37425000 124230 29035 25255 3275.1 42370 18723 46183 59380 22899 49481 FALSE TRUE FALSE 115522.1185 26734.16086 35034.41235 7624.598314 37055.55952 16413.14662 34627.52493 45860.47026 24883.90376 37090.63553 3.114589892 0.720779261 0.944562201 0.205566667 0.999054316 0.44251457 0.933592116 1.236443366 0.67089451 1 15.17876737 -4.260431423 24.97577766 0.788186034 3.114590638 0.856238848 0.285148524 28.93265637 716809.5807 0.069867542 0.414709127 5.49E-05 4.260431423 2.326404605 TGPLS(ph)MT(ph)T(ph)RR ddPTM_HeLa_A485_30min_R1 1 TGPLSMTTRR 10 1 P16070-14 P16070-14 CD44 CD44 antigen 3 0 T(0.205)GPLS(0.838)MT(0.983)T(0.974)RR 47.429 0.018512 183250000 11669 16358 16655 12404 22737 13317 13424 23220 16273 16830 TRUE FALSE FALSE 14264.72879 18270.9258 22816.37757 13081.59911 20473.22445 14014.25753 10555.85274 17525.25859 19538.84184 12634.59073 1.129021833 1.446103494 1.80586598 1.035379728 1.620410576 1.109197585 0.835472471 1.387085578 1.546456252 1 13.62509131 -6.286000739 24.65575051 1.178574595 1.410983039 0.15087239 0.274743656 1372.582844 1377852.273 0.09861188 0.087007154 5.18E-07 6.286000739 0.232408444 TGPPPIS(ph)PSK ddPTM_HeLa_A485_30min_R1 3 TGPPPISPSK 10 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;E7ERW0;E7EWF5;F8W708;E7EQU6;F8WBN7;E7EUJ2;A0A096LP98 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 TGPPPIS(0.987)PS(0.013)K;TGPPPIS(0.995)PS(0.005)K;TGPPPIS(0.976)PS(0.024)K ;; 166.11 4.16E-07 1872680000 1078310 914900 641370 1790390 1350990 1054840 1970410 1772470 827730 2300380 TRUE FALSE FALSE 1318176.339 1021889.596 878639.4526 1888194.472 1216480.692 1110069.791 1549415.807 1337768.953 993847.8186 1726937.601 0.763302819 0.591735101 0.508784713 1.093377358 0.704414966 0.6427967 0.89720428 0.774648113 0.575497237 1 20.71978452 -11.4248446 2.146068723 3.192083188 0.731418977 0.201582861 0.162282569 10405151.44 857446.3969 110925403.5 0.042419352 3.76E-12 11.4248446 -2.460664211 TGPPPIS(ph)PSK ddPTM_HeLa_A486_30min_R1 4 TGPPPISPSK 10 0 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;E7ERW0;E7EWF5;F8W708;E7EQU6;F8WBN7;E7EUJ2;A0A096LP98 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 TGPPPIS(1)PSK;TGPPPIS(1)PSK;TGPPPIS(0.988)PS(0.012)K;TGPPPIS(1)PSK ;;; 167.83 3.58E-07 2950730000 2311770 2056850 903070 1246960 1932530 2492980 3348400 2994200 1642780 3835150 TRUE FALSE FALSE 2149726.861 1893857.715 1252762.889 2902985.898 1690134.067 2185421.474 2510594.904 2312486.023 1785177.493 2874803.477 0.747782197 0.65877815 0.435773401 1.009803251 0.587912906 0.760198564 0.873310097 0.80439795 0.620973749 1 21.45503191 -13.99999998 0.125245288 1.874875774 0.604770388 0.233015296 0.151246102 219.8506375 1.757596139 48.87596676 1.270298985 1.00E-14 13.99999998 -1.270105386 TGPPPIS(ph)PSKR ddPTM_HeLa_A486_30min_R1 2 TGPPPISPSKR 11 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;E7ERW0;E7EWF5;F8W708;E7EQU6;F8WBN7;E7EUJ2;A0A096LP98 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 TGPPPIS(0.997)PS(0.003)KR;TGPPPIS(0.965)PS(0.035)KR ; 123.1 0.00021959 0 717430 601210 357650 401690 724260 737680 1015200 938760 485770 1204410 TRUE FALSE FALSE 667141.8618 553567.93 496141.6582 935154.6203 633416.5573 646672.5418 761186.2223 725024.841 527876.9347 902817.8966 0.73895507 0.61315569 0.549547877 1.035817548 0.70159947 0.716282369 0.843122655 0.803068751 0.584699236 1 19.78407549 -11.71348661 2.145935384 9.972374046 0.73592178 0.263852589 0.134233445 8120056.506 381729.1308 355123086 0.037556112 1.93E-12 11.71348661 -9.236452267 TGPPPISPS(ph)KR ddPTM_HeLa_A485_30min_R1 1 TGPPPISPSKR 11 1 Q14135-4;Q14135;Q14135-2;A0A0A6YYI5;A0A075B6E4;G5E9M7;E7ERW0;E7EWF5;F8W708;E7EQU6;F8WBN7;E7EUJ2;A0A096LP98 Q14135-4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 TGPPPIS(0.311)PS(0.689)KR 86.699 0.0019316 0 252490 277540 185860 362510 372450 308170 484010 508510 214670 482300 TRUE FALSE FALSE 308655.5294 309995.8887 254617.3483 382313.0034 335367.5702 324305.3047 380597.3095 383797.1252 257752.2999 362071.4861 0.852471242 0.856173161 0.703223971 1.055904754 0.926246841 0.89569413 1.051166204 1.060003728 0.711882349 1 18.46591504 -5.263719934 24.99994468 0.959825204 0.80917783 0.306786099 0.105474778 250.5114911 2746169.386 0.028896999 0.045284252 5.45E-06 5.263719934 -0.150647373 TGQAGS(ph)LS(ph)GSPKPFSPQLSAPITTK ddPTM_HeLa_A486_30min_R1 1 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 2 0 T(0.001)GQAGS(0.997)LS(0.594)GS(0.408)PKPFSPQLSAPITTK 113.68 0.00028108 278720000 249110 219500 82309 213630 201990 303300 452050 397220 169220 572700 TRUE FALSE FALSE 231648.6754 202106.0206 114181.2491 497341.4363 176654.5307 265881.9297 338942.3087 306781.6773 183888.1258 429292.1923 0.539606076 0.47078895 0.265975602 1.158514981 0.411501849 0.619349558 0.789537557 0.714622075 0.428351899 1 18.71160041 -14 0.118962143 2.153128707 0.428403506 0.197529496 0.237418606 266.7160601 2.059346792 75.88451511 2.34873362 1.00E-14 14 -1.724725201 TGQAGSLS(ph)GSPKPFSPQLSAPITTK ddPTM_HeLa_A486_30min_R1 1 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 TGQAGS(0.008)LS(0.496)GS(0.496)PKPFSPQLSAPITTK 182.74 1.42E-20 1142500000 214440 144480 84340 133640 147660 207610 363170 310170 124350 424690 TRUE FALSE FALSE 199408.8634 133030.8786 116998.7067 311120.6738 129139.1059 181997.189 272301.0248 239551.062 135128.7581 318344.8597 0.626392597 0.417882917 0.367521897 0.977307044 0.405657896 0.571698218 0.855364918 0.752489178 0.424472876 1 18.28023094 -14 0.126165452 2.251094309 0.435969622 0.265904447 0.197659653 203.9632013 1.638448502 65.35794448 1.655865984 1.00E-14 14 -1.815124687 TGQAGSLSGS(ph)PKPFSPQLSAPITTK ddPTM_HeLa_A485_30min_R1 2 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 TGQAGSLS(0.002)GS(0.998)PKPFSPQLSAPITTK;TGQAGSLS(0.005)GS(0.995)PKPFSPQLSAPITTK ; 229.28 7.57E-39 1990760000 502410 320220 166755 934920 548300 468380 871820 785310 307860 1149330 TRUE FALSE FALSE 614169.3712 357666.9435 228444.6138 985992.3123 493709.3268 492903.6525 685548.5349 592711.4912 369644.6781 862823.1829 0.71181371 0.414530985 0.264764112 1.142751298 0.572202204 0.571268439 0.794541163 0.686944328 0.428413011 1 19.71870541 -11.49139045 2.292688554 6.035523703 0.623785009 0.197203641 0.22945459 6947432.284 665181.8975 183141861 0.057474929 3.23E-12 11.49139045 -5.411738694 TGQAGSLSGS(ph)PKPFSPQLSAPITTK ddPTM_HeLa_A486_30min_R1 1 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 TGQAGS(0.005)LS(0.142)GS(0.853)PKPFSPQLSAPITTK 107.29 0.00020667 932740000 241100 177180 59730 146370 152320 245820 356020 282140 145420 409520 TRUE FALSE FALSE 224200.135 163139.6115 82859.05562 340756.7571 133214.6053 215493.2277 266940.0304 217902.8811 158025.1227 306973.5265 0.73035658 0.531445214 0.26992248 1.110052587 0.433961217 0.701992873 0.869586487 0.709842583 0.514784205 1 18.22775472 -14 0.161426909 2.238111854 0.566458128 0.170791894 0.223932748 238.8644521 2.202737306 95.50025944 0.919990092 1.00E-14 14 -1.671653725 TGQIWPNDGEGAFHGDADGSFGT(ph)PPGYGCAADR ddPTM_HeLa_A486_30min_R1 2 TGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 33 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 TGQIWPNDGEGAFHGDADGS(0.224)FGT(0.776)PPGYGCAADR;TGQIWPNDGEGAFHGDADGS(0.227)FGT(0.773)PPGYGCAADR ; 141.57 3.26E-09 339860000 301190 310650 206478 112221 290130 312710 333250 347750 263140 354490 TRUE FALSE FALSE 280078.1363 286032.9626 286431.8113 261256.1593 253739.19 274131.0196 249867.3252 268574.9163 285949.1871 265723.3967 1.054021362 1.07643123 1.077932222 0.983188393 0.954899694 1.031640507 0.940328659 1.010731158 1.076115956 1 18.01956574 -5.258558607 24.99999988 0.997013046 1.070158571 0.436418114 0.036319969 236.5199159 2052569.037 0.010162854 0.016680461 5.51E-06 5.258558607 0.073145525 TGQLEGAPAPGPAAS(ph)PQTLDHSGATATGGASELK ddPTM_HeLa_A486_30min_R1 1 TGQLEGAPAPGPAASPQTLDHSGATATGGASELK 34 0 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 0 TGQLEGAPAPGPAAS(0.987)PQT(0.013)LDHSGATATGGASELK 175.31 4.71E-15 264250000 101870 98699 55816 36187 96224 118120 151480 127760 88446 148550 TRUE FALSE FALSE 94729.43906 90877.73178 77429.45 84245.16479 84154.68867 103547.5554 113578.1018 98671.83698 96112.57049 111352.1131 0.850719725 0.816129387 0.695356809 0.756565479 0.755752956 0.929911005 1.019990539 0.886124513 0.863140966 1 16.76476941 -6.267240898 21.62994189 0.93772608 0.771756917 0.669992083 0.057844744 48.16824321 179584.7507 0.021208997 0.019280845 5.40E-07 6.267240898 -0.165969163 TGQPAQPAPSAQQPPRPPAS(ph)PDEPSVAASSVGSSR ddPTM_HeLa_A485_30min_R1 2 TGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSR 35 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 TGQPAQPAPSAQQPPRPPAS(1)PDEPSVAASSVGSSR;TGQPAQPAPS(0.003)AQQPPRPPAS(0.99)PDEPS(0.007)VAASSVGSSR ; 154.77 3.91E-10 1634200000 117175 135032 129296 129597 201222 110184 197860 154371 113642 174816 TRUE FALSE FALSE 143240.1745 150822.8178 177127.9709 136676.556 181187.6311 115953.0639 155585.5946 116511.2702 136448.907 131237.5885 1.091456923 1.149234907 1.349674075 1.041443671 1.380607746 0.883535466 1.185526163 0.887788869 1.039709039 1 17.00182146 -6.272787712 24.99397509 1.003937109 1.198755818 0.396481918 0.125226056 786.7608101 1732784.807 0.041385681 0.036815853 5.34E-07 6.272787712 0.194818709 TGQPAQPAPSAQQPPRPPAS(ph)PDEPSVAASSVGSSR ddPTM_HeLa_A486_30min_R1 3 TGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSR 35 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 TGQPAQPAPSAQQPPRPPAS(1)PDEPSVAASSVGSSR;TGQPAQPAPSAQQPPRPPAS(1)PDEPSVAASSVGSSR;TGQPAQPAPS(0.001)AQQPPRPPAS(0.999)PDEPSVAASSVGSSR ;; 252.89 1.38E-64 2290870000 183015 177959 139711 74112 192494 179025 235645 206539 159017 226946 TRUE FALSE FALSE 170186.5936 163856.8807 193810.8408 172536.4814 168349.6076 156938.7157 176684.1286 159514.5784 172800.7216 170117.2444 1.000407655 0.963199711 1.13927804 1.014220998 0.989609302 0.92253267 1.038602108 0.937674361 1.015774281 1 17.37616987 -5.699308486 4.268537686 0.980327561 1.033994635 0.153909761 0.052553115 0.380015393 13.7932979 0.015979896 0.02046436 2.00E-06 5.699308486 0.053667074 TGRDT(ph)PENGETAIGAENSEK ddPTM_HeLa_A485_30min_R1 4 TGRDTPENGETAIGAENSEK 20 1 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 T(0.238)GRDT(0.762)PENGETAIGAENSEK;TGRDT(1)PENGETAIGAENSEK;T(0.236)GRDT(0.764)PENGETAIGAENSEK;T(0.194)GRDT(0.806)PENGETAIGAENSEK ;;; 261.23 1.07E-58 1486760000 1747420 1268670 965950 2621760 1649010 1281780 2023440 1480030 1151260 3165920 TRUE FALSE FALSE 2136127.55 1417029.921 1323295.102 2764980.11 1484828.774 1348892.019 1591115.514 1117050.322 1382307.322 2376714.408 0.898773341 0.596213796 0.556774973 1.163362371 0.62474009 0.567544848 0.66946012 0.469997707 0.581604301 1 21.18053713 -4.246306661 22.90345318 0.679405468 0.898773845 0.079453668 0.206874585 2237.321047 3386013.638 0.051802684 1.040248114 5.67E-05 4.246306661 0.219368378 TGRDT(ph)PENGETAIGAENSEK ddPTM_HeLa_A486_30min_R1 4 TGRDTPENGETAIGAENSEK 20 1 Q8N3X1-2;Q8N3X1 Q8N3X1-2 FNBP4 Formin-binding protein 4 1 0 TGRDT(1)PENGETAIGAENSEK;TGRDT(1)PENGETAIGAENSEK;T(0.208)GRDT(0.792)PENGETAIGAENSEK;T(0.001)GRDT(0.999)PENGETAIGAENSEK ;;; 287.26 4.11E-73 3120640000 3639030 3328800 1535300 1580080 2527660 4100620 4647890 3954360 2886920 5606040 TRUE FALSE FALSE 3383952.789 3065013.765 2129809.277 3678506.093 2210617.313 3594727.196 3484938.762 3054038.551 3137160.55 4202251.095 0.80527144 0.729374256 0.506825801 0.87536561 0.526055503 0.855428939 0.829302839 0.726762509 0.74654286 1 22.00273094 -6.357567269 24.99071212 0.814386424 0.691038357 0.238695417 0.125813281 84.45693765 21948.61111 0.042578893 0.037551059 4.39E-07 6.357567269 -0.123348066 TGS(ph)CSELDACPSK ddPTM_HeLa_A485_30min_R1 3 TGSCSELDACPSK 13 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y9Z7 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 TGS(1)CSELDACPSK;T(0.008)GS(0.978)CS(0.014)ELDACPSK;T(0.001)GS(0.941)CS(0.058)ELDACPSK ;; 380.81 5.00E-110 2444840000 1339650 853500 629970 2806200 1603810 926830 2019930 1682450 919530 3302700 TRUE FALSE FALSE 1637650.521 953309.4005 863022.1182 2959495.6 1444129.045 975357.3856 1588355.454 1269826.5 1104071.237 2479397.672 0.660503371 0.384492335 0.348077329 1.193634903 0.582451561 0.393384811 0.640621499 0.512151203 0.445298166 1 21.24155825 -10.02464695 4.399268349 1.000020591 0.574607623 0.234067157 0.231498479 41153421.61 13396661.67 8422.052551 0.057430651 9.45E-11 10.02464695 -0.425412968 TGS(ph)CSELDACPSK ddPTM_HeLa_A486_30min_R1 4 TGSCSELDACPSK 13 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y9Z7 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 T(0.021)GS(0.979)CSELDACPSK;T(0.024)GS(0.974)CS(0.002)ELDACPSK;T(0.038)GS(0.961)CS(0.001)ELDACPSK;TGS(0.871)CS(0.129)ELDACPSK ;;; 402.56 2.01E-142 3254770000 2643500 2820400 1177580 2063150 2481890 3456060 5028220 4464730 2064000 5514790 TRUE FALSE FALSE 2458204.301 2596901.232 1633570.513 4803117.466 2170588.213 3029686.456 3770106.173 3448208.443 2242909.182 4133850.689 0.594652416 0.628203926 0.39516921 1.161899117 0.525076588 0.732896924 0.912008308 0.834139572 0.542571406 1 21.97905485 -3.316154952 0.089939663 1.127240961 1.00E-20 0.172102633 0.207738284 175.9039135 1.925444294 5.003230239 25.93370187 0.000482886 3.316154952 -1.127240961 TGS(ph)EPALSPAVVR ddPTM_HeLa_A486_30min_R1 1 TGSEPALSPAVVR 13 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 T(0.012)GS(0.988)EPALSPAVVR 69.716 0.011184 77168000 46713 53418 38901 32433 53312 50479 73861 63337 39783 76047 TRUE FALSE FALSE 43438.65993 49184.96313 53964.509 75505.66307 46625.11185 44251.41421 55380.19658 48916.54774 43231.42247 57004.33622 0.762023783 0.862828451 0.946673755 1.324559991 0.817922196 0.776281545 0.97150849 0.858119767 0.758388315 1 15.79878405 TGS(ph)ESS(ph)QTGTSTTSSR ddPTM_HeLa_A485_30min_R1 7 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 TGS(1)ESS(0.998)QT(0.002)GTSTTSSR;T(0.002)GS(0.998)ESS(0.995)QT(0.005)GTSTTSSR;T(0.092)GS(0.905)ES(0.003)S(1)QTGTSTTSSR;T(0.1)GS(0.9)ES(0.002)S(0.997)QT(0.001)GTSTTSSR;T(0.114)GS(0.886)ESS(1)QTGTSTTSSR;TGS(1)ESS(1)QTGTSTTSSR;T(0.002)GS(0.997)ES(0.002)S(0.997)QT(0.002)GTSTTSSR ;;;;;; 311.03 8.01E-78 6509154000 4924136 3617858 2905844 7719722 5090215 3222205 6059423 4469985 3241473 9200328 TRUE FALSE FALSE 6019493.065 4040935.022 3980836.618 8141430.865 4583415.322 3390914.671 4764777.775 3373714.17 3892006.899 6906855.549 0.871524389 0.585061464 0.576360196 1.178746364 0.663603761 0.490949123 0.689862086 0.488458771 0.563499102 1 22.71959762 TGS(ph)ESS(ph)QTGTSTTSSR ddPTM_HeLa_A486_30min_R1 6 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 T(0.01)GS(0.99)ESS(0.965)QT(0.035)GTSTTSSR;TGS(0.999)ES(0.001)S(1)QTGTSTTSSR;T(0.137)GS(0.862)ES(0.056)S(0.941)QT(0.003)GTSTTSSR;T(0.114)GS(0.886)ES(0.002)S(0.997)QT(0.001)GTSTTSSR;TGS(0.993)ES(0.009)S(0.981)QT(0.017)GTSTTSSR;TGS(0.999)ES(0.001)S(0.984)QT(0.016)GTSTTSSR ;;;;; 268.14 6.14E-51 9197191000 3976077 4098640 2198706 2814390 3388049 4436809 5754580 5047041 2892417 7063021 TRUE FALSE FALSE 3697374.535 3773848.839 3050103.847 6552042.151 2963088.302 3889440.616 4314723.218 3897939.94 3143134.034 5294394.569 0.698356438 0.712800829 0.576100592 1.237543229 0.559665182 0.734633689 0.814960646 0.736239033 0.593672042 1 22.33603429 -11.45652913 2.251740098 3.709926858 0.745995838 0.151986953 0.183509336 6654594.586 786363.9626 91800287.89 0.045674654 3.50E-12 11.45652913 -2.96393102 TGS(ph)ESSQTGTSTTSSR ddPTM_HeLa_A485_30min_R1 2 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.031)GS(0.969)ESSQTGTSTTSSR;TGS(0.754)ES(0.246)SQTGTSTTSSR ; 296.46 1.50E-67 236790000 208009 174346 154402 316350 231637 162125 260392 208991 151060 380634 TRUE FALSE FALSE 254279.8844 194734.2481 211521.725 333631.3995 208574.407 170613.6143 204757.122 157735.6296 181376.3564 285748.9488 0.889871635 0.68148719 0.740236231 1.167568248 0.72992187 0.597075212 0.716562993 0.552007733 0.63474024 1 18.12438867 -5.985960577 24.9984685 0.672040295 0.859793956 0.184147171 0.165128964 362.756616 645917.4962 0.050801297 0.057578368 1.03E-06 5.985960577 0.18775366 TGS(ph)ESSQTGTSTTSSR ddPTM_HeLa_A486_30min_R1 7 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.034)GS(0.918)ES(0.039)S(0.008)QTGTSTTSSR;T(0.011)GS(0.989)ESSQTGTSTTSSR;T(0.001)GS(0.773)ES(0.225)SQTGTSTTSSR;T(0.025)GS(0.974)ES(0.001)SQTGTSTTSSR;T(0.015)GS(0.984)ES(0.001)SQTGTSTTSSR;T(0.005)GS(0.616)ES(0.379)SQTGTSTTSSR;T(0.008)GS(0.536)ES(0.448)S(0.008)QTGTSTTSSR ;;;;;; 281.49 9.49E-59 1729120000 817195 817846 483960.5 487140.9 729745 857045.8 1075431 951367 646087.3 1311533 TRUE FALSE FALSE 759913.8505 753036.9044 671362.9665 1134088.634 638213.5775 751312.203 806346.7891 734761.5023 702090.6674 983116.6002 0.772964113 0.765969066 0.682892514 1.153564728 0.649173839 0.764214746 0.82019446 0.747379815 0.714147912 1 19.90700301 TGS(ph)GQGPSSTGQPGR ddPTM_HeLa_A485_30min_R1 1 TGSGQGPSSTGQPGR 15 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 T(0.007)GS(0.988)GQGPS(0.005)STGQPGR 110.12 6.57E-05 0 36117 26853 32340 48176 41857 28644 43951 42373 34128 78599 TRUE FALSE FALSE 44151.10205 29993.22476 44303.91178 50807.73289 37689.57011 30143.75555 34560.5098 31980.95531 40977.17656 59005.71581 0.748251274 0.508310498 0.750841019 0.861064597 0.638744393 0.51086162 0.58571461 0.541997582 0.694461138 1 15.84856709 -10.34229239 4.830818556 1.000236257 0.644655133 0.476166012 0.110389925 0.000298877 4.07E-05 0.113728989 0.027565198 4.55E-11 10.34229239 -0.355581124 TGS(ph)GQGPSSTGQPGR ddPTM_HeLa_A486_30min_R1 1 TGSGQGPSSTGQPGR 15 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 T(0.029)GS(0.97)GQGPS(0.001)STGQPGR 139.67 9.19E-06 0 44832 55494 37820 28821 63697 66209 78515 82439 50918 83827 TRUE FALSE FALSE 41689.50831 51096.45333 52464.91685 67096.74453 55707.52831 58040.80674 58869.71655 63669.43933 55331.61324 62836.17358 0.663463511 0.813169396 0.834947672 1.06780443 0.886551888 0.923684614 0.936876216 1.013260924 0.880569425 1 15.93930771 -4.555414428 1.469554131 0.952699754 0.637219666 0.695497318 0.060736328 0.373935249 1.117346621 0.017233332 0.148068807 2.78E-05 4.555414428 -0.315480088 TGS(ph)IVLPYIMSSTLR ddPTM_HeLa_A486_30min_R1 1 TGSIVLPYIMSSTLR 15 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 T(0.003)GS(0.997)IVLPYIMSSTLR 105.46 0.00031158 36186000 45018 39994 23041 37932 42858 59682 68777 69899 33533 64484 TRUE FALSE FALSE 41862.47067 36824.72978 31963.09226 88307.61298 37482.35001 52319.04164 51568.26715 53984.52358 36439.66744 48336.78668 0.866058204 0.761836529 0.661258111 1.826923531 0.775441492 1.082385596 1.06685344 1.116841381 0.753870291 1 15.56083395 TGS(ph)NAAQYK ddPTM_HeLa_A485_30min_R1 2 TGSNAAQYK 9 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 T(0.01)GS(0.99)NAAQYK;T(0.009)GS(0.991)NAAQYK ; 85.845 0.0042783 1753450000 492930 392110 259656 804950 681160 533420 833350 848220 423150 1216300 TRUE FALSE FALSE 602580.5779 437963.8536 355713.5596 848922.3803 613341.3187 561349.0464 655297.9647 640192.715 508072.3236 913098.7943 0.659929223 0.479645638 0.38956744 0.929715805 0.671714082 0.614773615 0.717663815 0.701120973 0.556426453 1 19.80041144 -14 0.182612362 2.45233763 0.567144656 0.378743195 0.13888425 151.1729976 1.461589669 80.14954792 0.43595298 1.00E-14 14 -1.885192975 TGS(ph)NAAQYK ddPTM_HeLa_A486_30min_R1 4 TGSNAAQYK 9 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 TGS(1)NAAQYK;TGS(1)NAAQYK;T(0.002)GS(0.998)NAAQYK;T(0.002)GS(0.998)NAAQYK ;;; 152.55 5.75E-05 7299900000 2896550 2792470 1317849 2613830 2381200 3507860 5050850 4755300 2023050 4738960 TRUE FALSE FALSE 2693516.803 2571184.507 1828155.426 6085128.336 2082527.692 3075095.899 3787073.908 3672621.997 2198409.603 3552293.571 0.758247242 0.72380969 0.514640862 1.71301392 0.586248758 0.865664911 1.066092605 1.033873447 0.618870473 1 21.76031938 TGS(ph)NIS(ph)GASSDISLDEQYKHQLEETKK ddPTM_HeLa_A485_30min_R1 1 TGSNISGASSDISLDEQYKHQLEETKK 27 2 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 T(0.466)GS(0.534)NIS(0.922)GAS(0.039)S(0.035)DIS(0.004)LDEQYKHQLEETKK 94.949 0.0016414 496760000 202820 157910 97623 481690 214160 216670 472220 458030 139380 598660 TRUE FALSE FALSE 247936.6093 176376.2009 133737.8101 508003.505 192837.4784 228014.5062 371326.3393 345697.4243 167352.2875 449425.0795 0.551675063 0.392448506 0.297575316 1.130340802 0.429075918 0.50734709 0.826225229 0.769199228 0.372369712 1 18.77772111 -14 0.095857346 2.160260545 0.321644945 0.199448671 0.243381923 334.8116755 2.199330425 80.49456215 4.769085631 1.00E-14 14 -1.838615599 TGS(ph)NISGASSDISLDEQYK ddPTM_HeLa_A486_30min_R1 1 TGSNISGASSDISLDEQYK 19 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 T(0.154)GS(0.845)NIS(0.002)GASSDISLDEQYK 261.94 3.31E-58 146930000 162040 209110 109190 237340 158460 300100 418480 367320 190130 473370 TRUE FALSE FALSE 150681.8328 192539.362 151471.2922 552539.5145 138584.4692 263076.7132 313771.8778 283689.2545 206610.6215 354835.0709 0.424653156 0.542616494 0.426878019 1.557172782 0.390560237 0.741405613 0.884275269 0.799496098 0.582272268 1 18.43678908 TGS(ph)NISGASSDISLDEQYKHQLEETKK ddPTM_HeLa_A485_30min_R1 2 TGSNISGASSDISLDEQYKHQLEETKK 27 2 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 T(0.009)GS(0.986)NIS(0.005)GASSDISLDEQYKHQLEETKK;T(0.006)GS(0.994)NIS(0.001)GASSDISLDEQYKHQLEETKK ; 199.03 1.40E-28 1290760000 162024 97682 57875 454680 198956 182243 415250 356490 124581 591630 TRUE FALSE FALSE 198065.6798 109105.0602 79285.37088 479518.0171 179147.2421 191784.9617 326528.4452 269060.2685 149583.264 444147.5291 0.445945698 0.245650495 0.178511341 1.0796368 0.403350757 0.431804635 0.735180146 0.605790308 0.336787338 1 18.76067944 -14 0.110235597 2.444172916 0.240761314 0.268250614 0.248319805 242.2831905 1.771718248 80.88578137 3.195104543 1.00E-14 14 -2.203411602 TGS(ph)NISGASSDISLDEQYKHQLEETKK ddPTM_HeLa_A486_30min_R1 1 TGSNISGASSDISLDEQYKHQLEETKK 27 2 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 T(0.02)GS(0.929)NIS(0.031)GAS(0.003)S(0.015)DISLDEQYKHQLEETKK 189.76 8.31E-21 828460000 275750 217540 53670 301370 164160 384550 640930 555390 172100 872740 TRUE FALSE FALSE 256421.349 200301.3381 74452.46133 701604.5904 143569.5221 337108.1308 480562.5349 428939.8211 187017.7666 654200.2234 0.391961574 0.306177422 0.113806842 1.072461557 0.219458076 0.515298098 0.734580206 0.655670551 0.285872367 1 19.31937273 -14 0.090266699 2.512691193 0.095917777 0.259749337 0.268160317 302.5817527 1.89325815 90.06946075 6.255273059 1.00E-14 14 -2.416773416 TGS(ph)PGDAPERPPLCDFSEGLSAPMDFYR ddPTM_HeLa_A485_30min_R1 1 TGSPGDAPERPPLCDFSEGLSAPMDFYR 28 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 T(0.028)GS(0.972)PGDAPERPPLCDFSEGLSAPMDFYR 181.93 1.44E-20 246130000 14600 15508 11795 24281 20217 14006 26260 18340 9775.5 22940 TRUE FALSE FALSE 17847.71963 17321.5257 16158.46133 25607.40955 18204.12449 14739.3325 20649.33648 13842.08624 11737.35318 17221.48018 1.036363858 1.005809345 0.938273665 1.486945912 1.057059225 0.855869086 1.199045393 0.803768671 0.681553099 1 14.07192153 -7.277756104 24.07835025 0.806995579 1.080079099 0.30173558 0.176359399 634.0573968 935661.9235 0.09753352 0.047105375 5.28E-08 7.277756104 0.27308352 TGS(ph)PGDAPERPPLCDFSEGLSAPMDFYR ddPTM_HeLa_A486_30min_R1 4 TGSPGDAPERPPLCDFSEGLSAPMDFYR 28 1 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 T(0.095)GS(0.905)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.035)GS(0.965)PGDAPERPPLCDFSEGLSAPMDFYR;T(0.288)GS(0.711)PGDAPERPPLCDFS(0.001)EGLSAPMDFYR;T(0.053)GS(0.947)PGDAPERPPLCDFSEGLSAPMDFYR ;;; 133.94 1.64E-06 726002000 63584.5 67510 42573.3 44269.3 69418 79316.2 100555 100762 60796.8 101207 TRUE FALSE FALSE 59127.5549 62160.26173 59058.82191 103061.1676 60710.94714 69530.97367 75395.07544 77820.69222 66066.71558 75864.10845 0.779387725 0.81936324 0.778481724 1.358497051 0.800259153 0.916520013 0.993817458 1.025790638 0.87085602 1 16.21112988 TGS(ph)PGPELLFHEGQQK ddPTM_HeLa_A485_30min_R1 2 TGSPGPELLFHEGQQK 16 0 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 T(0.033)GS(0.967)PGPELLFHEGQQK;T(0.133)GS(0.867)PGPELLFHEGQQK ; 168.27 3.35E-12 974390000 1028130 663080 510120 1932850 1098460 761780 1377080 1052810 695600 2512400 TRUE FALSE FALSE 1256833.971 740621.438 698834.6159 2038436.701 989093.4655 801665.6229 1082855.608 794606.6968 835200.5396 1886104.917 0.666364824 0.39267245 0.370517361 1.080765276 0.524410629 0.425037661 0.574122679 0.421295067 0.442817646 1 20.8469785 -10.15290899 4.859436193 1.000020111 0.543612704 0.320249676 0.199205119 7.71E-05 1.34E-05 0.197266579 0.047840521 7.03E-11 10.15290899 -0.456407407 TGS(ph)PGPELLFHEGQQK ddPTM_HeLa_A486_30min_R1 4 TGSPGPELLFHEGQQK 16 0 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 T(0.018)GS(0.982)PGPELLFHEGQQK;T(0.158)GS(0.842)PGPELLFHEGQQK;T(0.034)GS(0.966)PGPELLFHEGQQK;T(0.027)GS(0.973)PGPELLFHEGQQK ;;; 263.51 5.70E-51 1349150000 1916880 1943430 901720 1311700 1636170 2376180 3165750 2697990 1562400 3602840 TRUE FALSE FALSE 1782516.611 1789425.529 1250890.133 3053703.89 1430946.302 2083031.071 2373645.866 2083716.574 1697830.09 2700665.413 0.660028674 0.662586902 0.463178492 1.130722775 0.529849531 0.771302902 0.878911491 0.771556729 0.628671024 1 21.36488348 -14 0.093183251 1.780671207 0.534530623 0.182411242 0.177688566 365.8696349 2.349333108 57.94585745 3.703867458 1.00E-14 14 -1.246140585 TGS(ph)PSSSASACSPGGMLSSAGGAPEGKDDKK ddPTM_HeLa_A486_30min_R1 1 TGSPSSSASACSPGGMLSSAGGAPEGKDDKK 31 2 Q96F45 Q96F45 ZNF503 Zinc finger protein 503 1 0 T(0.117)GS(0.701)PS(0.138)S(0.028)S(0.007)AS(0.009)ACSPGGMLSSAGGAPEGKDDKK 156.43 1.92E-10 131400000 87096 53262 14048 74970 39758 91301 175440 151400 44326 264170 TRUE FALSE FALSE 80991.02016 49041.32514 19487.76182 174533.9488 34771.18091 80037.2109 131543.0564 116929.525 48168.21337 198020.1125 0.40900401 0.247658304 0.098413043 0.881395059 0.175594188 0.404187281 0.664291393 0.590493175 0.243249096 1 17.59528744 -14 0.168684598 3.208659424 0.280660734 0.371311271 0.229262792 143.5621985 1.349022335 106.4439467 0.842433769 1.00E-14 14 -2.927998691 TGS(ph)QGQCTQVR ddPTM_HeLa_A485_30min_R1 3 TGSQGQCTQVR 11 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 T(0.065)GS(0.935)QGQCTQVR;T(0.004)GS(0.996)QGQCTQVR;T(0.074)GS(0.926)QGQCTQVR ;; 163.62 6.32E-08 646426000 198667 237520 211300 306330 334880 229300 308010 330170 263520 381500 TRUE FALSE FALSE 242859.7888 265295.8979 289468.6629 323064.0322 301538.1714 241305.7934 242201.1473 249195.2898 316406.0469 286399.071 0.847976873 0.926315497 1.010717884 1.128020531 1.052860159 0.842550894 0.84567714 0.870098108 1.1047733 1 18.12766729 -6.251649648 24.9197156 0.919067097 0.997929261 0.073616991 0.101190243 1578.777531 4018774.06 0.035989411 0.03558204 5.60E-07 6.251649648 0.078862164 TGS(ph)QGQCTQVR ddPTM_HeLa_A486_30min_R1 3 TGSQGQCTQVR 11 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 T(0.453)GS(0.547)QGQCTQVR;T(0.001)GS(0.999)QGQCTQVR;T(0.001)GS(0.999)QGQCTQVR ;; 156.2 2.98E-07 406911000 282186 268892 161666 138318 277750 324475 393840 382361 225334 432487 TRUE FALSE FALSE 262406.2186 247584.0186 224267.4048 322011.2942 242912.0051 284444.5735 295297.0664 295305.7472 244866.1326 324189.4402 0.809422474 0.763701675 0.691778871 0.993281256 0.749290307 0.87740234 0.910878116 0.910904893 0.75531804 1 18.30647757 -11.71312506 0.025457643 1.996574193 1.91E-06 0.28073226 0.08660821 1667.850557 4.921273021 246.6382988 149.4315752 1.94E-12 11.71312506 -1.996572288 TGS(ph)TSSKEDDYESDAATIVQK ddPTM_HeLa_A485_30min_R1 3 TGSTSSKEDDYESDAATIVQK 21 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 T(0.023)GS(0.772)T(0.044)S(0.071)S(0.09)KEDDYESDAATIVQK;T(0.135)GS(0.783)T(0.077)S(0.003)S(0.001)KEDDYESDAATIVQK;T(0.041)GS(0.861)T(0.094)S(0.004)SKEDDYESDAATIVQK ;; 231.4 1.42E-36 724850000 643670 355130 191517 1100430 510280 390820 964510 674850 320491 1478890 TRUE FALSE FALSE 786852.1709 396659.3643 262367.108 1160543.704 459474.7315 411282.7309 758434.5592 509341.9794 384810.604 1110229.94 0.708729014 0.357276768 0.23631781 1.045318328 0.413855468 0.370448243 0.683132865 0.458771612 0.34660442 1 20.08242707 -10.85870674 2.550351396 1.212543546 0.512543666 0.293816786 0.226319352 62334649.91 36621386.97 80352087.63 0.055949222 1.38E-11 10.85870674 -0.699999881 TGS(ph)TSSKEDDYESDAATIVQK ddPTM_HeLa_A486_30min_R1 3 TGSTSSKEDDYESDAATIVQK 21 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 T(0.037)GS(0.873)T(0.072)S(0.018)SKEDDYESDAATIVQK;T(0.028)GS(0.944)T(0.028)S(0.001)SKEDDYESDAATIVQK;T(0.024)GS(0.965)T(0.01)S(0.001)SKEDDYESDAATIVQK ;; 293.13 3.03E-87 770680000 628896 440585 113871 416149 364136 588812 880214 788791 320442 1289730 TRUE FALSE FALSE 584813.638 405671.44 157964.9008 968815.903 318462.6674 516170.362 659975.1472 609200.5085 348218.1706 966773.2133 0.604912952 0.41961386 0.163393957 1.002112894 0.329407831 0.533910492 0.682657668 0.630137968 0.360185994 1 19.88281797 -14 0.34070717 6.085710152 0.511834462 0.290944773 0.219618459 512.9832465 4.328779389 1898.835905 0.173765228 1.00E-14 14 -5.573875689 TGS(ph)YGALAEITASK ddPTM_HeLa_A485_30min_R1 1 TGSYGALAEITASK 14 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 T(0.141)GS(0.859)YGALAEITASK 82.651 0.0034946 958020000 387190 340160 261000 714010 501260 408900 735040 596250 366850 1046600 TRUE FALSE FALSE 473319.0797 379938.753 357554.7611 753014.5583 451352.7944 430309.3717 577992.6993 450018.7526 440473.4301 785701.8812 0.602415612 0.483566047 0.45507688 0.958397296 0.57445808 0.54767512 0.735638686 0.572760182 0.560611398 1 19.58362249 -11.10063081 2.31470657 1.663828431 0.611746178 0.423549476 0.136458422 11634562.53 3256867.038 40664547.29 0.035140234 7.93E-12 11.10063081 -1.052082253 TGS(ph)YGALAEITASK ddPTM_HeLa_A486_30min_R1 3 TGSYGALAEITASK 14 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 T(0.007)GS(0.993)YGALAEITASK;T(0.191)GS(0.809)YGALAEITASK;T(0.016)GS(0.984)YGALAEITASK ;; 174.59 1.81E-12 2608267000 1199240 1256010 624986 943736 1261740 1698640 2125910 2007440 1093210 2347920 TRUE FALSE FALSE 1115179.469 1156479.193 866997.3169 2197065.102 1103480.804 1489079.067 1593984.832 1550389.734 1187970.323 1759985.55 0.633629901 0.657095846 0.492616156 1.248342694 0.626982877 0.846074599 0.905680636 0.880910491 0.67498868 1 20.74713215 TGSCS(ph)ELDACPSK ddPTM_HeLa_A485_30min_R1 1 TGSCSELDACPSK 13 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;A0A1B0GUA8;Q9H1H9;H0Y9Z7 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 TGS(0.458)CS(0.542)ELDACPSK 295.2 1.31E-57 497360000 236910 153710 131330 507420 298190 203150 382660 338520 199110 668060 TRUE FALSE FALSE 289609.8122 171685.0474 179914.4321 535139.0697 268501.1566 213786.6199 300901.565 255497.4392 239069.5507 501524.9367 0.577458449 0.342326044 0.358734769 1.067023852 0.535369504 0.426273161 0.599973287 0.509441147 0.476685272 1 18.93596191 -10.60465075 2.988260877 1.02997778 0.544676418 0.334698805 0.192994686 73891789.7 76762251.63 17338254.5 0.048928 2.49E-11 10.60465075 -0.485301362 TGSDHTNPTS(ph)PLLVKPSDLLEENK ddPTM_HeLa_A486_30min_R1 1 TGSDHTNPTSPLLVKPSDLLEENK 24 1 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YE73 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 TGSDHTNPT(0.077)S(0.922)PLLVKPSDLLEENK 107.15 0.00020168 113720000 210760 205870 121330 20096 246860 130820 146850 126800 104190 71364 TRUE FALSE FALSE 195986.8124 189556.1114 168312.2253 46784.5036 215896.5169 114680.7585 110106.5768 97930.40802 113221.2731 53493.9899 3.66371648 3.543502958 3.146376362 0.874574951 4.035902301 2.143806411 2.058298081 1.830680572 2.116523245 1 15.70708919 -1 0.12801268 0.679104106 10.55152413 0.448667473 0.778565992 82.20815357 0.715944821 4.403281357 146.1236644 0.1 1 9.872420023 TGSDHTNPTS(ph)PLLVKPSDLLEENKINSSVK ddPTM_HeLa_A485_30min_R1 1 TGSDHTNPTSPLLVKPSDLLEENKINSSVK 30 2 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YE73 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 TGSDHTNPT(0.116)S(0.884)PLLVKPSDLLEENKINSSVK 193.58 1.02E-21 474500000 422120 322430 188090 328500 531390 417850 813120 785830 382290 740550 TRUE FALSE FALSE 516019.1377 360135.3837 257672.3181 346445.1232 478482.9458 439727.9799 639390.2694 593103.9604 459012.0964 555944.5138 0.928184603 0.647790157 0.463485675 0.623164928 0.860666728 0.790956595 1.150097273 1.066840207 0.82564372 1 19.08458138 -6.235405666 1.714527544 1.00614392 0.65771159 0.499621409 0.143157371 0.301917614 1.755813427 0.062498092 0.058071197 5.82E-07 6.235405666 -0.348432329 TGSDHTNPTS(ph)PLLVKPSDLLEENKINSSVK ddPTM_HeLa_A486_30min_R1 1 TGSDHTNPTSPLLVKPSDLLEENKINSSVK 30 2 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;H0YE73 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 TGSDHTNPT(0.184)S(0.816)PLLVKPSDLLEENKINSSVK 115.19 3.17E-05 548550000 756450 591440 200200 94869 572130 630570 966710 857860 507290 565640 TRUE FALSE FALSE 703426.7613 544572.1404 277722.8015 220859.8264 500368.1205 552776.6846 724828.9332 662544.005 551262.3057 424000.0623 1.659025137 1.284368067 0.655006511 0.52089574 1.180113318 1.303718404 1.70950195 1.562603556 1.300146756 1 18.69370495 -6.240238148 3.251045731 1.44024294 1.009841888 0.168176376 0.344313413 0.398042716 8.72546272 0.133593967 0.126383972 5.75E-07 6.240238148 -0.430401053 TGSEPALS(ph)PAVVR ddPTM_HeLa_A485_30min_R1 3 TGSEPALSPAVVR 13 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 TGSEPALS(1)PAVVR;TGSEPALS(1)PAVVR;TGSEPALS(1)PAVVR ;; 226.06 1.39E-27 2018330000 1181870 1338690 1126760 1317170 1627360 1257110 1731900 1568480 1129010 1938800 TRUE FALSE FALSE 1444772.904 1495238.15 1543595.412 1389123.662 1465334.324 1322930.336 1361865.417 1183807.821 1355591.951 1455492.841 0.992634841 1.027307114 1.060531092 0.954400889 1.006761616 0.908922599 0.935673044 0.813338127 0.931362844 1 20.47307631 -6.141651956 1.421503951 0.902603972 1.019333782 0.422097485 0.050969964 0.343760036 1.406203928 0.02158922 0.021516408 7.22E-07 6.141651956 0.116729809 TGSEPALS(ph)PAVVR ddPTM_HeLa_A486_30min_R1 4 TGSEPALSPAVVR 13 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 TGSEPALS(1)PAVVR;TGSEPALS(1)PAVVR;TGSEPALS(1)PAVVR;TGSEPALS(1)PAVVR ;;; 297.77 1.05E-57 2618120000 1956190 2267170 1720750 761210 2599480 1973210 2414230 2217160 1804710 2352930 TRUE FALSE FALSE 1819071.183 2087511.192 2387070.483 1772135.349 2273428.979 1729775.412 1810164.119 1712361.068 1961143.716 1763741.013 1.031370915 1.183570137 1.353413265 1.004759393 1.288981184 0.980742297 1.026320818 0.97086877 1.111922726 1 20.7502073 -6.280778495 24.94591118 1.01667208 1.173779311 0.357133926 0.103593543 891.6901021 1150205.233 0.035335458 0.03120983 5.24E-07 6.280778495 0.157107231 TGSES(ph)SQTGTSTTSSR ddPTM_HeLa_A485_30min_R1 3 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 TGS(0.146)ES(0.853)S(0.001)QTGTSTTSSR;TGS(0.202)ES(0.797)S(0.001)QTGTSTTSSR;TGS(0.077)ES(0.921)S(0.001)QTGTSTTSSR ;; 333.65 1.05E-90 1632550000 533742 486313 382066 835215 621680 405783 638332 570467 429522 1046580 TRUE FALSE FALSE 652471.0665 543183.075 523408.1125 880840.6806 559783.3563 427029.1704 501947.1535 430559.0738 515723.1256 785686.8669 0.830446701 0.691348039 0.666179027 1.12110908 0.712476408 0.543510638 0.638864126 0.548003399 0.656397793 1 19.58359492 -5.992016727 24.98966179 0.644621215 0.819897551 0.140443362 0.166438666 309.2099306 967897.1836 0.050657903 0.057343347 1.02E-06 5.992016727 0.175276336 TGSESS(ph)QTGTSTTSSR ddPTM_HeLa_A485_30min_R1 2 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 TGSES(0.038)S(0.955)QT(0.006)GT(0.002)STTSSR;TGSESS(0.997)QT(0.003)GTSTTSSR ; 317.63 2.20E-78 25293000000 734300 762810 690680 880180 1093370 703500 1077400 947190 737560 1177570 TRUE FALSE FALSE 897642.5017 852013.9939 946191.2736 928262.0047 984510.2437 740334.1722 847204.6885 714890.1674 885581.5267 884023.4706 1.015405735 0.963791146 1.070323702 1.050042262 1.113669802 0.83745986 0.9583509 0.808677814 1.00176246 1 19.75372515 -6.261251374 24.9999999 0.911611364 1.040214169 0.435721424 0.068609744 15.52844043 2064983.29 0.022568332 0.021218798 5.48E-07 6.261251374 0.128602805 TGSGQGPS(ph)STGQPGR ddPTM_HeLa_A486_30min_R1 2 TGSGQGPSSTGQPGR 15 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 TGS(0.01)GQGPS(0.709)S(0.252)T(0.029)GQPGR;T(0.005)GS(0.315)GQGPS(0.339)S(0.339)T(0.002)GQPGR ; 211.9 6.50E-26 193121000 87273 108886 56253 60952 98234 136945 165046 175849 91109 183151 TRUE FALSE FALSE 81155.61338 100257.4768 78035.66811 141899.3363 85912.57572 120050.1183 123749.7451 135812.0215 99006.40148 137288.7975 0.59113063 0.730266989 0.568405212 1.033582775 0.625779942 0.874434917 0.901382687 0.989243288 0.721154262 1 17.06685438 -3.003959881 0.247782966 0.95842269 9.52E-18 0.373437906 0.133574421 20.33185714 0.642989672 0.177798127 6.618608705 0.000990923 3.003959881 -0.95842269 TGSGQGPSS(ph)TGQPGR ddPTM_HeLa_A485_30min_R1 1 TGSGQGPSSTGQPGR 15 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 T(0.001)GS(0.21)GQGPS(0.299)S(0.477)T(0.012)GQPGR 98.439 0.0006923 67152000 27377 21397 17731 49588 38280 23543 41988 39967 30799 79530 TRUE FALSE FALSE 33466.9192 23899.19302 24290.43475 52296.86688 34468.70879 24775.67508 33016.92079 30165.03058 36980.07679 59704.63464 0.560541395 0.400290416 0.40684337 0.87592642 0.577320488 0.414970718 0.553004318 0.505237672 0.619383688 1 15.86555531 -8.186297343 3.544552217 0.999974019 0.537519132 0.531204244 0.129991731 1.001161919 17.89190957 0.13133929 0.034678081 6.51E-09 8.186297343 -0.462454887 TGSGS(ph)PFAGNS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 T(0.008)GS(0.047)GS(0.944)PFAGNS(1)PAR;TGSGS(1)PFAGNS(1)PAR ; 173.63 4.71E-12 2890400000 1795740 2140160 1784050 2185890 2475510 1901290 2425200 2159080 1754210 2586830 TRUE FALSE FALSE 2195196.168 2390433.095 2444044.336 2305299.636 2229039.532 2000838.604 1907036.208 1629562.245 2106263.856 1941980.888 1.130390202 1.230925139 1.258531611 1.187086675 1.14781744 1.030308082 0.982005652 0.839123729 1.084595564 1 20.88909757 -6.270818591 1.80705246 0.962844061 1.208507647 0.723183969 0.0642116 0.17449829 1.123466452 0.026295367 0.023867863 5.36E-07 6.270818591 0.245663587 TGSGS(ph)PFAGNS(ph)PAR ddPTM_HeLa_A486_30min_R1 3 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 TGSGS(1)PFAGNS(1)PAR;TGS(0.004)GS(0.996)PFAGNS(1)PAR;T(0.017)GS(0.026)GS(0.96)PFAGNS(0.996)PAR ;; 240.41 5.64E-35 3240920000 4320240 4702800 2679200 1379700 3939760 4279550 4655060 4321360 3859730 5110290 TRUE FALSE FALSE 4017413.486 4330133.001 3716657.991 3212011.326 3445598.564 3751582.632 3490314.752 3337480.663 4194294.504 3830640.122 1.048757742 1.130394102 0.970244626 0.838505113 0.899483756 0.979361807 0.91115705 0.871259256 1.094933058 1 21.86915406 -4.882583534 5.373688519 0.933153671 1.087875829 0.394477145 0.071236646 0.178867741 7.611565345 0.01835457 0.039700945 1.31E-05 4.882583534 0.154722157 TGSGS(ph)PFAGNS(ph)PAREGEQDAASLK ddPTM_HeLa_A486_30min_R1 1 TGSGSPFAGNSPAREGEQDAASLK 24 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 TGS(0.01)GS(0.99)PFAGNS(1)PAREGEQDAASLK 219.7 5.69E-38 280030000 216470 241300 151470 149420 283120 336490 434640 437190 230480 351420 TRUE FALSE FALSE 201296.5709 222178.5092 210123.2405 347857.3113 247608.4496 294977.285 325888.4748 337651.3808 250458.192 263422.1446 0.764159639 0.843431404 0.797667337 1.320531771 0.93996824 1.119789247 1.237133937 1.28178814 0.950786398 1 18.00701711 -5.239046252 24.58648485 1.130361361 0.805920572 0.573231743 0.126220828 455.1750812 499757.5141 0.033535267 0.058023537 5.77E-06 5.239046252 -0.32444079 TGSGS(ph)PFAGNS(ph)PAREGEQDAASLKDVFK ddPTM_HeLa_A485_30min_R1 1 TGSGSPFAGNSPAREGEQDAASLKDVFK 28 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 TGS(0.001)GS(0.999)PFAGNS(1)PAREGEQDAASLKDVFK 165.55 4.66E-14 819250000 121890 110620 85048 213950 278030 231000 429970 472540 146780 333230 TRUE FALSE FALSE 149004.01 123556.0467 116510.7943 225637.5467 250348.357 243094.8028 338103.397 356648.8241 176237.3997 250161.8936 0.595630325 0.493904347 0.465741575 0.901966097 1.000745371 0.971749931 1.351538366 1.425672067 0.704493387 1 17.93250252 -5.518179177 1.715502456 1.123037628 0.503634076 0.611594472 0.196002354 0.235933022 1.398032175 0.066718274 0.109892131 3.03E-06 5.518179177 -0.619403552 TGSGS(ph)PFAGNS(ph)PAREGEQDAASLKDVFK ddPTM_HeLa_A486_30min_R1 2 TGSGSPFAGNSPAREGEQDAASLKDVFK 28 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 T(0.001)GS(0.014)GS(0.985)PFAGNS(1)PAREGEQDAASLKDVFK;TGS(0.001)GS(0.999)PFAGNS(1)PAREGEQDAASLKDVFK ; 278.97 2.44E-77 584710000 486760 406540 247684 429430 756490 640380 1101660 1072360 355350 904310 TRUE FALSE FALSE 452640.6376 374324.2898 343593.878 999734.7422 661603.9702 561376.4265 826013.0158 828207.0375 386152.0241 677864.8899 0.667744626 0.552210766 0.50687664 1.474828918 0.976011562 0.828153862 1.218551113 1.221787778 0.569659278 1 19.37063822 -5.226364671 24.99689258 1.046311823 0.57327054 0.457513099 0.232322989 540.0555344 384883.8282 0.06216984 0.107675103 5.94E-06 5.226364671 -0.473041284 TGSGS(ph)PFAGNSPAR ddPTM_HeLa_A485_30min_R1 5 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 TGS(0.002)GS(0.998)PFAGNSPAR;TGS(0.001)GS(0.999)PFAGNSPAR;T(0.002)GS(0.071)GS(0.927)PFAGNSPAR;T(0.001)GS(0.006)GS(0.993)PFAGNSPAR;TGS(0.009)GS(0.991)PFAGNSPAR ;;;; 190.96 9.37E-18 1410110000 1553640 1678880 1577280 1935270 2498780 1929410 2646840 2940780 1805610 2738660 TRUE FALSE FALSE 1899241.858 1875210.412 2160781.508 2040988.9 2249992.689 2030430.924 2081321.011 2219549.094 2167979.365 2055962.463 0.923772633 0.912083973 1.050982956 0.992717005 1.094374401 0.987581709 1.012334149 1.079566935 1.054483924 1 20.97138249 -4.758454195 24.99991949 1.035096342 0.917928256 0.642470398 0.034628921 43.70267248 365977.0266 0.00877997 0.021241582 1.74E-05 4.758454195 -0.117168087 TGSGS(ph)PFAGNSPAR ddPTM_HeLa_A486_30min_R1 3 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 TGSGS(1)PFAGNSPAR;TGSGS(1)PFAGNSPAR;TGS(0.003)GS(0.997)PFAGNSPAR ;; 235.02 3.92E-35 2033780000 1275420 1381060 927280 436543 1476100 1383020 1589750 1608170 1125280 1454510 TRUE FALSE FALSE 1186019.644 1271619.776 1286347.649 1016294.166 1290953.774 1212397.054 1191977.735 1242024.797 1222820.176 1090291.229 1.087800776 1.16631203 1.179820231 0.93213092 1.184044905 1.11199377 1.093265454 1.139167925 1.121553714 1 20.05628212 -10.94229655 2.457355127 0.918212779 1.113382483 0.196653814 0.068449634 49090720.88 23421229.02 22974198.23 0.017265623 1.14E-11 10.94229655 0.195169705 TGSGS(ph)PFAGNSPAREGEQDAASLKDVFK ddPTM_HeLa_A485_30min_R1 1 TGSGSPFAGNSPAREGEQDAASLKDVFK 28 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 T(0.081)GS(0.081)GS(0.419)PFAGNS(0.419)PAREGEQDAASLKDVFK 73.266 0.0030286 131850000 41392 38905 28970 64465 83456 63275 114410 137170 35325 81441 TRUE FALSE FALSE 50599.5076 43454.60132 39687.20854 67986.55972 75146.82761 66587.98116 89965.36886 103528.8424 42414.40348 61139.25751 0.827610764 0.71074794 0.649128075 1.111995181 1.229109261 1.089119886 1.471482849 1.693328422 0.693734357 1 15.89981141 -5.391089135 3.738693857 1.2355421 0.727869057 0.395415518 0.25595336 0.226167027 5.601978955 0.0742699 0.113943239 4.06E-06 5.391089135 -0.507673044 TGSGSPFAGNS(ph)PAR ddPTM_HeLa_A485_30min_R1 5 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR ;;;; 301.88 2.79E-58 4080740000 1949060 2187860 1643610 1940430 2060020 1518190 2164790 1795920 1368330 2541490 TRUE FALSE FALSE 2382621.673 2443711.195 2251649.735 2046430.777 1854917.176 1597680.081 1702264.932 1355467.804 1642941.28 1907943.316 1.248790597 1.280809118 1.180144985 1.072584684 0.972207696 0.837383411 0.892198902 0.710434001 0.861105918 1 20.86358688 -5.594517614 1.129849139 0.837190985 1.273382489 0.846250969 0.07015774 0.168069885 0.445028732 0.027232849 0.049098207 2.54E-06 5.594517614 0.436191504 TGSGSPFAGNS(ph)PAR ddPTM_HeLa_A486_30min_R1 6 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR ;;;;; 325.29 8.89E-70 3932230000 2690090 2387950 1458577 739297 1833320 2074390 2355140 2117120 1758820 2640990 TRUE FALSE FALSE 2501528.583 2198720.145 2023377.076 1721120.778 1603367.911 1818472.853 1765859.062 1635097.992 1911275.934 1979668.914 1.263609569 1.110650437 1.022078521 0.869398295 0.809917203 0.918574232 0.891997166 0.825945177 0.965452314 1 20.91682774 -4.686562967 1.512415065 0.887276998 1.275931127 0.805482186 0.058310981 0.215882364 0.790067389 0.016820672 0.100099671 2.06E-05 4.686562967 0.38865413 TGSGSPFAGNS(ph)PAREGEQDAASLKDVFK ddPTM_HeLa_A485_30min_R1 1 TGSGSPFAGNSPAREGEQDAASLKDVFK 28 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 TGSGS(0.009)PFAGNS(0.991)PAREGEQDAASLKDVFK 147.3 1.76E-09 82481000 69291 69170 45112 91515 132630 82894 192360 227030 57086 143580 TRUE FALSE FALSE 84704.5439 77258.8298 61800.80607 96514.23272 119424.8915 87234.20166 151260.7146 171350.5365 68542.63658 107788.1484 0.785842833 0.716765535 0.573354371 0.895406723 1.107959393 0.809311626 1.403314899 1.589697375 0.63590142 1 16.71783903 -5.742494103 1.38653479 1.154481255 0.689081373 0.300204909 0.262780252 0.482034611 1.935497029 0.101747741 0.144984015 1.81E-06 5.742494103 -0.465399882 TGSGSPFAGNS(ph)PAREGEQDAASLKDVFK ddPTM_HeLa_A486_30min_R1 1 TGSGSPFAGNSPAREGEQDAASLKDVFK 28 2 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 T(0.009)GS(0.009)GS(0.007)PFAGNS(0.974)PAREGEQDAASLKDVFK 57.021 0.011431 306070000 137530 100370 53583 107660 151610 160420 220400 243060 65581 248620 TRUE FALSE FALSE 127889.8572 92416.31566 74331.7726 250637.9208 132593.6601 140629.0114 165253.5888 187720.544 71265.61388 186363.9338 0.686237163 0.495891634 0.398852777 1.344884258 0.711477041 0.754593491 0.886725159 1.00727936 0.382400245 1 17.50776316 TGSNIS(ph)GASSDISLDEQYKHQLEETKK ddPTM_HeLa_A486_30min_R1 1 TGSNISGASSDISLDEQYKHQLEETKK 27 2 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 TGS(0.103)NIS(0.896)GAS(0.001)SDISLDEQYKHQLEETKK 292.8 3.09E-92 846100000 229410 200840 64793 299120 171290 365290 615000 503400 165480 739680 TRUE FALSE FALSE 213329.5437 184924.707 89882.58482 696366.4767 149805.211 320224.2338 461120.4952 388786.8091 179823.9396 554459.3135 0.384752386 0.333522591 0.162108531 1.25593792 0.270182514 0.57754325 0.831657949 0.701199889 0.324323057 1 19.08072207 -7.882217247 0.096675222 1.387198524 4.37E-26 0.186192181 0.305390607 25.61617035 1.920967901 14.11026424 11.65407281 1.31E-08 7.882217247 -1.387198524 TGSQGQCTQVR ddPTM_HeLa_A485_30min_R1 2 TGSQGQCTQVR 11 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 0 ; ; 239.36 3.80E-27 36339000 18318 18650.7 19898.9 20431.5 28661 17780.9 30372 27120 17742.6 28295 FALSE FALSE TRUE 22392.7759 20831.73713 27260.33117 21547.62111 25807.41021 18711.88043 23882.77408 20468.77748 21303.37708 21241.57723 1.054195536 0.980705759 1.283347789 1.014407776 1.214947926 0.880908241 1.124340901 0.963618532 1.002909381 1 14.37460327 -6.257809757 24.9953727 1.000205665 1.106737532 0.245869744 0.100527381 504.2149749 3472276.216 0.03254794 0.031322209 5.52E-07 6.257809757 0.106531867 TGSS(ph)SPPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_HeLa_A485_30min_R1 1 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 A0A1B0GTU4;F5GZ78;P49023;P49023-2;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 TGS(0.002)S(0.499)S(0.499)PPGGPPKPGSQLDSMLGSLQSDLNK 375.12 4.42E-168 6132500000 160570 99427 70229 268180 166250 146380 287690 234120 124430 380720 TRUE FALSE FALSE 196288.2425 111054.1228 96209.62957 282829.9943 149697.5663 154044.2305 226222.6813 176701.7029 149401.9597 285813.5106 0.686770342 0.38855449 0.336616801 0.989561318 0.523759587 0.53896763 0.791504505 0.618241253 0.522725323 1 18.12471459 -14 0.212501416 2.90832848 0.545407604 0.300201841 0.181385486 192.0156441 1.916697515 156.7779991 0.384803443 1.00E-14 14 -2.362920876 TGSSLLKEEEEDGQEGS(ph)IHNLPLVTSQRPFYDGPMPTPR ddPTM_HeLa_A485_30min_R1 1 TGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPR 39 2 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 TGSSLLKEEEEDGQEGS(1)IHNLPLVTSQRPFYDGPMPTPR 80.749 0.0001917 390630000 53672 33232 46348 102540 109120 65234 131080 124350 59695 166110 TRUE FALSE FALSE 65611.15123 37118.19332 63494.0539 108141.5006 98255.62966 68649.55137 103073.6872 93852.96753 71675.23895 124701.834 0.526144236 0.297655553 0.509166961 0.867200562 0.787924495 0.550509557 0.826561117 0.752618983 0.574772933 1 16.92812316 -5.086821254 5.044391818 0.748598653 0.409158616 0.548806401 0.134605997 0.15630039 6.634082224 0.035410837 0.063958584 8.19E-06 5.086821254 -0.339440036 TGSSLLKEEEEDGQEGS(ph)IHNLPLVTSQRPFYDGPMPTPR ddPTM_HeLa_A486_30min_R1 1 TGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPR 39 2 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 TGSSLLKEEEEDGQEGS(0.999)IHNLPLVTSQRPFYDGPMPTPR 92.485 2.30E-05 485560000 58236 64016 33888 43937 79937 78064 132330 137700 58341 100710 TRUE FALSE FALSE 54153.95713 58943.13902 47010.34115 102287.5565 69910.55608 68433.25738 99219.63436 106348.716 63398.04485 75491.56049 0.717351142 0.780791106 0.622723134 1.354953531 0.926071148 0.90650209 1.314314259 1.408749737 0.839803078 1 16.20402775 -5.248194889 24.98775014 1.116950785 0.714338701 0.4791577 0.190990781 691.5270555 1304669.094 0.052842207 0.090826885 5.65E-06 5.248194889 -0.402612085 TGSSS(ph)PPGGPPKPGSQLDS(ph)MLGSLQSDLNK ddPTM_HeLa_A485_30min_R1 1 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 A0A1B0GTU4;F5GZ78;P49023;P49023-2;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 2 0 T(0.02)GS(0.024)S(0.135)S(0.821)PPGGPPKPGS(0.008)QLDS(0.632)MLGS(0.357)LQS(0.003)DLNK 94.832 0.00061192 26518000 34312 18081 17222 63515 32164 27972 66227 43487 25522 71746 TRUE FALSE FALSE 41944.58603 20195.41567 23593.13447 66984.66362 28961.63923 29436.57067 52077.06043 32821.74507 30644.0313 53861.04259 0.778755553 0.374954043 0.438037092 1.243657018 0.537710334 0.546528052 0.966878061 0.609378198 0.568946122 1 15.71695454 -11.48232328 2.092373133 4.331870755 0.673872834 0.134419387 0.248274756 8302611.046 432621.7966 131825875 0.062525714 3.29E-12 11.48232328 -3.657997921 TGSSS(ph)PPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_HeLa_A485_30min_R1 3 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 A0A1B0GTU4;F5GZ78;P49023;P49023-2;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 T(0.022)GS(0.022)S(0.131)S(0.825)PPGGPPKPGSQLDSMLGSLQSDLNK;T(0.027)GS(0.027)S(0.136)S(0.81)PPGGPPKPGSQLDSMLGSLQSDLNK;T(0.029)GS(0.029)S(0.151)S(0.79)PPGGPPKPGSQLDSMLGSLQSDLNK ;; 207.2 2.84E-29 419980000 313858 187810 138566 469710 326801 254949 490010 393880 224123 689610 TRUE FALSE FALSE 383674.6293 209772.7458 189827.3296 495369.0679 294263.545 268297.7354 385315.3605 297280.3124 269102.4303 517702.9183 0.741109651 0.405199079 0.366672319 0.956859717 0.56840233 0.518246519 0.744278904 0.574229547 0.519800876 1 18.98176493 -11.13674783 2.290486818 1.827765235 0.597596621 0.34405739 0.165913067 9091454.882 2212326.696 39117814.84 0.042072684 7.30E-12 11.13674783 -1.230168614 TGSSS(ph)PPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_HeLa_A486_30min_R1 4 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 A0A1B0GTU4;F5GZ78;P49023;P49023-2;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 T(0.024)GS(0.024)S(0.138)S(0.814)PPGGPPKPGSQLDSMLGSLQSDLNK;T(0.022)GS(0.022)S(0.133)S(0.822)PPGGPPKPGSQLDSMLGSLQSDLNK;T(0.025)GS(0.025)S(0.142)S(0.808)PPGGPPKPGSQLDSMLGSLQSDLNK;T(0.003)GS(0.02)S(0.118)S(0.858)PPGGPPKPGSQLDSMLGSLQSDLNK ;;; 336.24 1.73E-127 3776919000 533000 467479 196376 335523 397299 652210 854710 808910 397126 930530 TRUE FALSE FALSE 495639.4524 430434.2615 272418.0463 781114.5004 347466.0548 571746.9614 640852.5178 624738.8514 431549.2014 697519.2313 0.710574605 0.617093038 0.390552739 1.119846544 0.498145484 0.819686305 0.91875964 0.895658246 0.618691474 1 19.41187347 -5.244583538 24.98927988 0.82269222 0.577175449 0.304217781 0.183156907 1088.658042 1613965.193 0.048168635 0.083145555 5.69E-06 5.244583538 -0.245516771 TGSSSPPGGPPKPGSQLDSMLGS(ph)LQSDLNK ddPTM_HeLa_A486_30min_R1 1 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 A0A1B0GTU4;F5GZ78;P49023;P49023-2;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 TGSSSPPGGPPKPGSQLDS(0.01)MLGS(0.904)LQS(0.086)DLNK 65.345 0.0033169 38115000 38660 41993 19815 33397 37192 48092 68976 63073 31945 59981 TRUE FALSE FALSE 35950.13364 38665.32174 27487.89866 77749.90379 32527.03256 42158.898 51717.47525 48712.65477 34714.01832 44961.36719 0.799578302 0.85996766 0.611367055 1.729260222 0.723444027 0.937669396 1.150264738 1.083433575 0.77208547 1 15.45639829 TGTGT(ph)PVKR ddPTM_HeLa_A485_30min_R1 4 TGTGTPVKR 9 1 A0A087WZL9;Q9H582-2;Q9H582 A0A087WZL9 ZNF644 Zinc finger protein 644 1 0 T(0.07)GT(0.07)GT(0.86)PVKR;TGT(0.02)GT(0.98)PVKR;T(0.037)GT(0.191)GT(0.772)PVKR;T(0.027)GT(0.126)GT(0.847)PVKR ;;; 113.22 0.00068069 602090000 1036260 937130 542207 1508300 1089160 946450 1594370 1802600 973550 2237500 TRUE FALSE FALSE 1266772.462 1046719.202 742791.9324 1590694.61 980719.4061 996004.6585 1253719.825 1360509.524 1168932.555 1679732.428 0.75415134 0.623146392 0.442208485 0.946992856 0.583854541 0.592954355 0.746380676 0.809956098 0.695904023 1 20.67980001 -9.126921908 0.360605278 1.073586435 0.643571902 0.360819193 0.129330268 6.071824183 1.014002253 0.748358002 0.109077683 7.47E-10 9.126921908 -0.430014533 TGTGT(ph)PVKR ddPTM_HeLa_A486_30min_R1 2 TGTGTPVKR 9 1 A0A087WZL9;Q9H582-2;Q9H582 A0A087WZL9 ZNF644 Zinc finger protein 644 1 0 T(0.007)GT(0.056)GT(0.937)PVKR;T(0.011)GT(0.167)GT(0.822)PVKR ; 83.081 0.0053078 262540000 609300 313020 267657 269610 363260 670010 627790 491640 510880 837430 TRUE FALSE FALSE 566591.2164 288215.1552 371300.9585 627665.7053 317696.5435 587350.9784 470710.3019 379704.3044 555163.4897 627732.0772 0.902600388 0.459137211 0.591495914 0.999894267 0.506102133 0.935671443 0.749858608 0.604882749 0.884395604 1 19.25978941 -14 0.159783214 2.038863247 0.652277913 0.178668067 0.17880101 225.2819976 2.067818096 73.73227779 0.742706561 1.00E-14 14 -1.386585334 TGTITTFEHAHNMR ddPTM_HeLa_A485_30min_R1 3 TGTITTFEHAHNMR 14 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ;; ;; 119.25 0.00020159 575940000 176016 207041 199145 219610 314141 174377 281905 275578 200183 314119 FALSE FALSE TRUE 215170.152 231252.6439 272817.0226 231606.7382 282864.019 183507.1101 221673.6938 207992.0634 240357.8919 235814.9142 0.912453534 0.980653173 1.156911655 0.98215475 1.199517087 0.778182799 0.940032544 0.882014032 1.019265014 1 17.84729544 -6.265511798 24.99411705 0.917533118 1.045266118 0.27073615 0.100195646 475.5423331 2918587.003 0.034034046 0.031154724 5.43E-07 6.265511798 0.127733 TGTITTFEHAHNMR ddPTM_HeLa_A486_30min_R1 2 TGTITTFEHAHNMR 14 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 105 0.00073295 322420000 235148 242740 179344 72031 291710 237920 300390 284870 193264 268320 FALSE FALSE TRUE 218665.3395 223504.3984 248790.7998 167691.8082 255121.0117 208567.8494 225229.2448 220011.3197 210016.2791 201130.9255 1.087179105 1.111238353 1.236959454 0.833744526 1.268432545 1.036975536 1.119814092 1.093871164 1.044176964 1 17.6177754 -7.942024237 2.556946664 1.000538165 1.09952028 0.077614294 0.110767808 0.686317556 9.87042077 0.099195964 0.027090289 1.14E-08 7.942024237 0.098982115 TGTLQDLIQHGS(ph)PINNECHPSLER ddPTM_HeLa_A485_30min_R1 4 TGTLQDLIQHGSPINNECHPSLER 24 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 0 TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER ;;; 299 1.43E-89 1005740000 415880 625820 701755 296946 929290 466026 681558 643988 561660 594672 TRUE FALSE FALSE 508391.0712 699004.2051 961363.377 313167.4081 836766.6247 490426.4007 535937.5655 486048.9333 674380.0101 446431.2145 1.138789257 1.565760149 2.153441215 0.701490841 1.874346142 1.098548634 1.200493039 1.088743165 1.510602279 1 18.76807838 TGTLQDLIQHGS(ph)PINNECHPSLER ddPTM_HeLa_A486_30min_R1 3 TGTLQDLIQHGSPINNECHPSLER 24 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 0 TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER ;; 292.69 2.43E-89 540871000 441118 500040 422283 38206.4 560230 371304 504821 455243 453437 264397 TRUE FALSE FALSE 410197.9061 460415.0093 585802.2867 88946.43004 489960.7295 325496.2876 378509.4463 351594.1068 492741.2842 198190.2703 2.069717679 2.323095925 2.955757041 0.448793122 2.472173477 1.642342418 1.9098286 1.774023045 2.486203201 1 17.59652661 -10.99716454 3.072308012 0.02670355 1.993288738 0.183166722 0.638508242 248118399.7 191491841.6 1709775968 0.154259369 1.01E-11 10.99716454 1.966585188 TGTT(ph)VPESIHSFIGDGLVKPEALNKK ddPTM_HeLa_A485_30min_R1 1 TGTTVPESIHSFIGDGLVKPEALNKK 26 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.177)GT(0.145)T(0.678)VPESIHSFIGDGLVKPEALNKK 182.97 2.54E-20 220880000 287670 235880 123570 270630 350080 297680 599750 566840 235190 542790 TRUE FALSE FALSE 351661.1991 263464.1141 169283.6852 285413.8316 315224.806 313266.0645 471608.513 427821.6012 282390.4757 407482.4423 0.863009452 0.646565562 0.415437986 0.70043222 0.773591137 0.768784203 1.157371371 1.049914197 0.693012622 1 18.63637837 -6.315244534 1.928111192 0.973289906 0.647864142 0.430694662 0.156122429 0.322998723 2.363057131 0.067155451 0.059267268 4.84E-07 6.315244534 -0.325425764 TGTTVPESIHS(ph)FIGDGLVKPEALNKK ddPTM_HeLa_A486_30min_R1 1 TGTTVPESIHSFIGDGLVKPEALNKK 26 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 TGTTVPESIHS(1)FIGDGLVKPEALNKK 141.09 7.82E-08 71791000 191070 178390 67765 22104 172860 211180 316420 252200 140630 155140 TRUE FALSE FALSE 177676.9797 164253.7267 94005.42281 51459.22907 151178.2869 185126.7587 237248.3693 194779.5655 152819.9216 116291.9342 1.527852993 1.412425787 0.808357204 0.442500414 1.299989444 1.591914005 2.04011027 1.67491896 1.314105941 1 16.82739151 -6.000966039 24.99981683 1.581671173 1.033542627 0.25588686 0.376408493 47.47488519 1228643.837 0.125595878 0.140661206 9.98E-07 6.000966039 -0.548128545 TGVAVNKPAEFTVDAK ddPTM_HeLa_A485_30min_R1 1 TGVAVNKPAEFTVDAK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 188.6 8.53E-14 61224000 72150 58822 40316 114240 103480 80674 133640 140710 67774 175770 FALSE FALSE TRUE 88199.51859 65700.72122 55230.56609 120480.6419 93177.16786 84897.96589 105086.7223 106200.6519 81375.62014 131953.7738 0.668412248 0.497907103 0.418559959 0.913051885 0.706134923 0.643391723 0.796390427 0.804832244 0.616697937 1 17.00967309 -13.99998343 0.049013272 2.339451278 2.68E-06 0.402098212 0.130875201 590.6814398 2.13854602 104.4220631 23.99411863 1.00E-14 13.99998343 -2.339448597 TGVAVNKPAEFTVDAK ddPTM_HeLa_A486_30min_R1 1 TGVAVNKPAEFTVDAK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 169.25 1.10E-10 33479000 36463 44668 26634 22683 52202 55625 66903 65348 39255 59184 FALSE FALSE TRUE 33907.132 41128.345 36947.39808 52807.17034 45654.3384 48762.55305 50163.16177 50469.68694 42657.65501 44363.94118 0.764294855 0.927066981 0.832824972 1.190317382 1.029086623 1.099148357 1.130719238 1.137628569 0.961538896 1 15.43709992 -5.247698619 24.89888024 1.085079166 0.849962713 0.679614799 0.074384859 415.7226133 753306.8073 0.019228849 0.033079674 5.65E-06 5.247698619 -0.235116453 TGVAVNKPAEFTVDAK(ac)HGGK ddPTM_HeLa_A485_30min_R1 2 TGVAVNKPAEFTVDAKHGGK 20 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 1 ; TGVAVNKPAEFTVDAK(1)HGGK;TGVAVNKPAEFTVDAK(1)HGGK 213.23 2.75E-29 113884000 144353 119933 78471 192108 174833 140655 238976 226634 119749 280337 FALSE TRUE FALSE 176463.8268 133958.1211 107500.6884 202602.3736 157426.0126 148019.4783 187916.8253 171051.6562 143781.5259 210454.1451 0.838490621 0.636519281 0.510803379 0.962691295 0.748029993 0.703333632 0.89291102 0.812773994 0.683196455 1 17.6831464 -13.99999997 0.141114668 1.830578382 0.668917865 0.256756376 0.124435272 194.14971 1.670833411 45.53744042 0.763749318 1.00E-14 13.99999997 -1.161660517 TGVELGKPTHFTVNAK ddPTM_HeLa_A485_30min_R1 2 TGVELGKPTHFTVNAK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 178.03 2.33E-13 208620000 467640 468590 350270 454080 694820 507290 837660 836850 474320 833780 FALSE FALSE TRUE 571664.9047 523387.5243 479849.449 478885.2406 625641.2811 533850.92 658687.0979 631611.2254 569511.6733 625933.9906 0.913299027 0.836170478 0.766613503 0.765073071 0.999532364 0.852886931 1.052326775 1.009070022 0.909858998 1 19.255651 -5.766572965 24.99997252 0.969265463 0.817589439 0.561746077 0.065022684 97.53464558 474981.9986 0.020559022 0.024018685 1.71E-06 5.766572965 -0.151676024 TGVELGKPTHFTVNAK ddPTM_HeLa_A486_30min_R1 2 TGVELGKPTHFTVNAK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 203.04 2.26E-18 132092000 514860 433080 220901 36557 435020 435830 568430 527370 381900 426470 FALSE FALSE TRUE 478770.9727 398761.1635 306439.7831 85106.54349 380455.7352 382061.7258 426202.8018 407299.3634 415003.3995 319679.1361 1.497660994 1.247379383 0.958585496 0.266224892 1.190117503 1.195141261 1.333220575 1.274088038 1.298187315 1 18.28626506 -5.97397146 24.99910975 1.238582772 0.9732414 0.112141422 0.303781702 478.1772374 459263.1469 0.101522147 0.115112203 1.06E-06 5.97397146 -0.265341372 TGVPST(ph)ASVGK ddPTM_HeLa_A486_30min_R1 1 TGVPSTASVGK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TGVPS(0.175)T(0.417)AS(0.409)VGK 122.55 0.00058336 0 354750 353260 166600 199230 309110 430710 528710 487470 230360 559110 TRUE FALSE FALSE 329883.8569 325266.391 231111.9817 463817.5085 270338.5415 377573.3793 396421.1659 376483.7224 250327.7903 419105.2168 0.787114652 0.776097214 0.551441434 1.106685123 0.645037405 0.900903554 0.945875045 0.898303594 0.597291039 1 18.67695295 -5.239062817 24.99731096 0.861350331 0.712005758 0.19068763 0.155414263 1474.9775 1647725.01 0.040629121 0.070306275 5.77E-06 5.239062817 -0.149344573 TGVPSTAS(ph)VGK ddPTM_HeLa_A485_30min_R1 2 TGVPSTASVGK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TGVPS(0.026)T(0.075)AS(0.899)VGK;TGVPS(0.115)T(0.375)AS(0.51)VGK ; 143.42 1.05E-06 811690000 1061980 852170 625890 1386230 1307000 931610 1739860 1581210 761640 1883750 TRUE FALSE FALSE 1298213.787 951823.8686 857432.7565 1461956.235 1176870.491 980387.6591 1368124.698 1193415.768 914494.1618 1414165.793 0.918006781 0.673063847 0.606316997 1.033794087 0.832201215 0.693262179 0.96744293 0.843900888 0.646666866 1 20.43151984 -10.86523065 2.746643381 1.084049471 0.802763221 0.15840343 0.137151102 59786839.28 37052964.75 32753635.01 0.035677163 1.36E-11 10.86523065 -0.28128625 TGVTST(ph)SDS(ph)EEEGDDQEGEKKR ddPTM_HeLa_A486_30min_R1 1 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 TGVT(0.003)S(0.016)T(0.531)S(0.531)DS(0.919)EEEGDDQEGEKKR 84.499 0.012805 1537900000 421790 314430 199860 245080 394640 415270 567250 501820 295430 621270 TRUE FALSE FALSE 392224.6991 289513.4217 277251.1444 570558.6257 345140.5713 364038.2096 425318.0502 387566.5407 321038.1103 465699.9482 0.842226203 0.621673725 0.595342872 1.225163601 0.741122203 0.781701203 0.913287734 0.832223714 0.689366858 1 18.8290412 TGVTSTS(ph)DS(ph)EEEGDDQEGEKK ddPTM_HeLa_A485_30min_R1 2 TGVTSTSDSEEEGDDQEGEKK 21 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 TGVTST(0.011)S(0.988)DS(1)EEEGDDQEGEKK;T(0.001)GVT(0.006)S(0.008)T(0.081)S(0.905)DS(1)EEEGDDQEGEKK ; 278.26 5.00E-73 1281370000 1681680 973290 532580 3893400 1538020 1363410 2941200 2255610 1037050 5427000 TRUE FALSE FALSE 2055763.914 1087107.799 729603.5045 4106086.583 1384889.328 1434796.039 2312788.593 1702418.111 1245176.423 4074148.777 0.504587345 0.266830658 0.179081213 1.007839136 0.339921148 0.352170752 0.567674064 0.417858602 0.305628609 1 21.95806723 -10.10091112 4.510478237 1.000047545 0.439886769 0.373293815 0.218460826 98269159.68 44013442.56 45834.70085 0.052766899 7.93E-11 10.10091112 -0.560160776 TGVTSTS(ph)DS(ph)EEEGDDQEGEKK ddPTM_HeLa_A486_30min_R1 4 TGVTSTSDSEEEGDDQEGEKK 21 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 TGVTSTS(1)DS(1)EEEGDDQEGEKK;TGVT(0.006)S(0.008)T(0.082)S(0.903)DS(1)EEEGDDQEGEKK;TGVTST(0.003)S(0.996)DS(1)EEEGDDQEGEKK;T(0.002)GVT(0.011)S(0.016)T(0.115)S(0.865)DS(0.992)EEEGDDQEGEKK ;;; 330.44 1.45E-114 3168830000 3431400 2573800 773970 2828150 1975470 3925660 5964860 4752330 2043260 7416600 TRUE FALSE FALSE 3190876.58 2369842.714 1073671.912 6584076.127 1727688.132 3441351.982 4472388.938 3670328.202 2220371.422 5559435.086 0.573956981 0.426274015 0.193126081 1.184306683 0.31076685 0.619011092 0.804468236 0.66019805 0.399387957 1 22.40650686 -14 0.161748192 2.48291418 0.475253586 0.179182603 0.266393652 237.1930682 2.189280111 114.1860087 1.090448796 1.00E-14 14 -2.007660594 TGVTSTS(ph)DS(ph)EEEGDDQEGEKKR ddPTM_HeLa_A485_30min_R1 6 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 T(0.015)GVT(0.023)S(0.139)T(0.336)S(0.488)DS(0.999)EEEGDDQEGEKKR;TGVT(0.005)S(0.026)T(0.14)S(0.831)DS(0.999)EEEGDDQEGEKKR;TGVTS(0.004)T(0.328)S(0.667)DS(1)EEEGDDQEGEKKR;TGVT(0.009)S(0.016)T(0.103)S(0.873)DS(1)EEEGDDQEGEKKR;T(0.001)GVT(0.261)S(0.003)T(0.02)S(0.717)DS(0.999)EEEGDDQEGEKKR;TGVTS(0.029)T(0.42)S(0.551)DS(1)EEEGDDQEGEKKR ;;;;; 235.57 5.34E-46 13250160000 5870990 4587840 2319620 11390210 8341380 7683830 17652010 18162690 4676270 18563030 TRUE FALSE FALSE 7176971.471 5124347.979 3177743.965 12012428.33 7510882.919 8086143.457 13880513.86 13708261.8 5614754.496 13935608.25 0.51500956 0.367716133 0.228030518 0.861995265 0.538970584 0.580250486 0.996046503 0.983685933 0.402907028 1 23.73227264 -5.710721886 0.872238221 0.821455734 0.37194435 0.355839241 0.220193031 0.714160307 1.163585942 0.111886293 0.196126298 1.95E-06 5.710721886 -0.449511384 TGVTSTS(ph)DS(ph)EEEGDDQEGEKKR ddPTM_HeLa_A486_30min_R1 7 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 TGVTS(0.001)T(0.005)S(0.994)DS(1)EEEGDDQEGEKKR;T(0.001)GVT(0.008)S(0.049)T(0.379)S(0.563)DS(1)EEEGDDQEGEKKR;TGVTS(0.042)T(0.297)S(0.661)DS(1)EEEGDDQEGEKKR;TGVT(0.002)S(0.016)T(0.115)S(0.868)DS(0.998)EEEGDDQEGEKKR;TGVT(0.005)S(0.042)T(0.372)S(0.581)DS(1)EEEGDDQEGEKKR;T(0.012)GVT(0.27)S(0.27)T(0.091)S(0.39)DS(0.967)EEEGDDQEGEKKR;TGVTS(0.001)T(0.133)S(0.866)DS(1)EEEGDDQEGEKKR ;;;;;; 212.76 5.73E-27 9011940000 5651023 3766337 1398565 5293775 4190044 5657839 10559350 9524060 2911626 11875800 TRUE FALSE FALSE 5254915.47 3467878.739 1940126.823 12324175.73 3664489.611 4959832.349 7917288.945 7355639.447 3164008.086 8902022.382 0.590305803 0.389560775 0.217942254 1.384424258 0.411646866 0.557157928 0.88938093 0.826288582 0.355425762 1 23.0857017 -8.450937601 0.066404527 1.561179862 5.65E-23 0.105118409 0.322056444 121.6795715 3.658688363 48.40718686 35.63663592 3.54E-09 8.450937601 -1.561179862 TGVTTAVIQPLSVPVQQVHS(ph)PTSYLCRPDGTTTAYFPPVFTK ddPTM_HeLa_A485_30min_R1 2 TGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTK 42 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;D6R9Z5;D6RBH5;D6RBB1;H0Y952;Q8WX93-6 Q8WX93-3 PALLD Palladin 1 0 TGVTTAVIQPLSVPVQQVHS(0.881)PT(0.059)S(0.059)YLCRPDGTTTAYFPPVFTK;TGVTTAVIQPLSVPVQQVHS(0.698)PT(0.151)S(0.151)YLCRPDGTTTAYFPPVFTK ; 266.68 2.99E-66 1559360000 115058 122626 110791 133148 195285 111546 166519 179312 113724 191646 TRUE FALSE FALSE 140652.2552 136966.044 151777.2013 140421.5381 175841.7397 117386.3761 130940.8553 135335.4508 136547.3637 143872.1792 0.977619551 0.951998119 1.054944758 0.976015925 1.222208079 0.815907403 0.910119358 0.940664496 0.949088034 1 17.13442812 -6.300725397 24.99998425 0.918632645 1.029517972 0.31863498 0.082462014 687.9589248 437786.2789 0.028879154 0.025469424 5.00E-07 6.300725397 0.110885327 TGVTTAVIQPLSVPVQQVHS(ph)PTSYLCRPDGTTTAYFPPVFTK ddPTM_HeLa_A486_30min_R1 1 TGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTK 42 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;D6R9Z5;D6RBH5;D6RBB1;H0Y952;Q8WX93-6 Q8WX93-3 PALLD Palladin 1 0 TGVTTAVIQPLSVPVQQVHS(0.653)PT(0.173)S(0.173)YLCRPDGTTTAYFPPVFTK 300.42 2.85E-95 841700000 399560 382780 248340 98569 422490 413890 549780 515840 307850 365960 TRUE FALSE FALSE 371552.9073 352447.1187 344503.8988 229473.6134 369497.3646 362828.4599 412219.229 398394.4927 334534.6859 274321.234 1.354444575 1.284797074 1.255841167 0.836514221 1.34695138 1.322640813 1.502688009 1.452291851 1.219499785 1 18.06550677 TGYES(ph)GEYEMLGEGLGVK ddPTM_HeLa_A485_30min_R1 2 TGYESGEYEMLGEGLGVK 18 0 Q13561;Q13561-3;Q13561-2;F8VW18;F8W1I6;H0YHL1;F8VX93;F8VRV7 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.011)GYES(0.989)GEYEMLGEGLGVK;T(0.033)GYES(0.967)GEYEMLGEGLGVK ; 165.02 4.44E-12 124738000 131283 112568 104397 149943 177535 127641 180726 177776 122296 239890 TRUE FALSE FALSE 160486.4504 125731.8484 143017.7946 158134.0064 159858.992 134324.0854 142112.4137 134176.1573 146839.6854 180089.8378 0.891146621 0.698161817 0.794146945 0.878084007 0.88766248 0.745872654 0.789119561 0.745051241 0.81536908 1 17.45835725 -8.050309786 22.21339143 1.000000001 0.801287622 0.471258397 0.062048588 3422.818207 1511283.08 0.061207312 0.01580366 8.91E-09 8.050309786 -0.198712379 TGYES(ph)GEYEMLGEGLGVK ddPTM_HeLa_A486_30min_R1 2 TGYESGEYEMLGEGLGVK 18 0 Q13561;Q13561-3;Q13561-2;F8VW18;F8W1I6;H0YHL1;F8VX93;F8VRV7 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.002)GYES(0.998)GEYEMLGEGLGVK;TGYES(1)GEYEMLGEGLGVK ; 204.13 2.66E-25 122418000 164666 164120 117821 74498 179134 182115 208408 220519 145657 196143 TRUE FALSE FALSE 153123.7637 151114.5335 163444.4466 173435.1089 156665.3434 159647.5029 156262.1141 170311.6376 158282.666 147027.5161 1.041463311 1.027797636 1.111658898 1.179609868 1.06555118 1.085834183 1.062808637 1.158365741 1.076551316 1 17.16572665 -4.758300843 24.89605031 1.099046755 1.03463045 0.178230526 0.048153539 109.1939225 866123.9119 0.012035492 0.029188936 1.74E-05 4.758300843 -0.064416305 TGYTLDVTTGQR ddPTM_HeLa_A485_30min_R1 2 TGYTLDVTTGQR 12 0 O43390-4;O43390;O43390-2;O60506-3;O60506;B7Z645;O60506-4;O60506-2;F6UXX1 O43390-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q 0 0 ; ; 256.38 6.90E-39 81349000 60480 71166 68336 70960 96235 64526 84739 81043 62793 99353 FALSE FALSE TRUE 73933.56735 79488.24464 93616.3301 74836.36512 86653.5055 67904.48158 66633.8204 61167.07718 75394.97913 74586.12556 0.991250944 1.065724276 1.255144028 1.003355042 1.161791216 0.910417066 0.893380906 0.820086534 1.010844558 1 16.18661967 -6.273739487 24.35735187 0.913603395 1.097556658 0.478954559 0.08731136 440.5318986 872362.9838 0.030115539 0.026761761 5.32E-07 6.273739487 0.183953263 THAPSALS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 THAPSALSPPR 11 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 THAPSALS(1)PPR 121.18 0.00021019 0 80149 92836 101470 73603 142220 95135 114420 118150 91777 127320 TRUE FALSE FALSE 97977.86854 103692.3626 139007.9755 77623.74552 128060.0774 100116.1215 89973.23227 89173.52725 110195.8021 95581.46715 1.025071821 1.084858453 1.454340257 0.812121302 1.33980029 1.04744282 0.941325081 0.932958343 1.152899253 1 16.54444329 -6.510092969 24.42472891 1.00023385 1.144356974 0.125888267 0.171388537 915.9377924 1749727.454 0.059812639 0.050270191 3.09E-07 6.510092969 0.144123124 THAPSALS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 THAPSALSPPR 11 0 H9KVB4;O15417;O15417-2 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 THAPS(0.001)ALS(0.999)PPR 72.898 0.0044538 0 42298 41458 36358 9827.3 46308 38823 41121 42514 38747 43349 TRUE FALSE FALSE 39333.12863 38172.71709 50436.7913 22878.45104 40499.61884 34033.41298 30832.09087 32834.49027 42105.62116 32494.12825 1.210468806 1.174757384 1.552181702 0.704079545 1.246367298 1.047371166 0.948851147 1.01047457 1.295791684 1 14.98789142 -5.249535004 24.99481923 1.042161256 1.298698065 0.333213666 0.178673734 932.6552015 1958230.355 0.046969235 0.080531271 5.63E-06 5.249535004 0.256536809 THAVSVS(ph)ETDDYAEIIDEEDTYTMPSTR ddPTM_HeLa_A486_30min_R1 2 THAVSVSETDDYAEIIDEEDTYTMPSTR 28 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;Q05397-2;Q05397-4;Q05397-3;H0YB99;H0YB33 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 T(0.004)HAVS(0.037)VS(0.39)ET(0.315)DDY(0.255)AEIIDEEDTYTMPSTR;T(0.064)HAVS(0.058)VS(0.326)ET(0.291)DDY(0.26)AEIIDEEDTYTMPSTR ; 197.12 1.95E-28 487104000 162386 162917 141846 48417.2 169539 151620 179419 171943 151102 146382 TRUE FALSE FALSE 151003.58 150006.8636 196772.57 112717.6885 148273.8377 132914.666 134526.4685 132795.3324 164199.643 109726.9944 1.376175305 1.367091702 1.793292262 1.027255773 1.351297723 1.211321486 1.226010693 1.210233937 1.49643799 1 16.74355897 -5.273828238 24.99874506 1.231939038 1.497676975 0.375319226 0.173214359 830.2422932 1675294.553 0.047037745 0.070321794 5.32E-06 5.273828238 0.265737936 THAVSVSETDDY(ph)AEIIDEEDTYTMPSTR ddPTM_HeLa_A485_30min_R1 2 THAVSVSETDDYAEIIDEEDTYTMPSTR 28 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;Q05397-2;Q05397-4;Q05397-3;H0YB99;H0YB33 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 THAVSVS(0.001)ET(0.005)DDY(0.994)AEIIDEEDTYTMPSTR;THAVSVSETDDY(0.999)AEIIDEEDTYTMPSTR ; 237.32 1.39E-48 921730000 138017 200949 159520 139340 219910 171190 196916 242680 158175 227060 TRUE FALSE FALSE 168718.4055 224448.2375 218533.0862 146951.7914 198014.9882 180153.2437 154843.2879 183162.3495 189919.2716 170458.1207 0.989793885 1.316735375 1.282033882 0.862099094 1.161663565 1.056876862 0.908394902 1.074529912 1.114169691 1 17.37905781 -5.240777759 24.99880133 1.030611124 1.208242482 0.308387955 0.116611052 961.0274167 1162760.334 0.031041894 0.053692278 5.74E-06 5.240777759 0.177631358 THAVSVSETDDY(ph)AEIIDEEDTYTMPSTR ddPTM_HeLa_A486_30min_R1 1 THAVSVSETDDYAEIIDEEDTYTMPSTR 28 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;Q05397-2;Q05397-4;Q05397-3;H0YB99;H0YB33 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 THAVSVS(0.001)ET(0.004)DDY(0.995)AEIIDEEDTYTMPSTR 187.95 2.84E-19 558070000 124580 125270 107620 31230 122480 103290 125290 112020 100490 100860 TRUE FALSE FALSE 115847.5853 115343.149 149293.3462 72705.01828 107117.4163 90547.12998 93941.11682 86515.49138 109200.5541 75603.99951 1.532294403 1.525622318 1.974675244 0.961655716 1.416822086 1.197649999 1.24254163 1.144324268 1.444375361 1 16.20617494 -5.265865663 24.9990995 1.217643553 1.662339819 0.579870217 0.185345708 264.9503249 1496408.036 0.049449729 0.076312027 5.42E-06 5.265865663 0.444696266 THCAATPSSSEDTETVSNS(ph)SEGR ddPTM_HeLa_A486_30min_R1 1 THCAATPSSSEDTETVSNSSEGR 23 0 O75143-4;O75143-3;O75143-2;O75143;O75143-5;H0YEM7 O75143-4 ATG13 Autophagy-related protein 13 1 0 THCAATPSSSEDTET(0.007)VSNS(0.917)S(0.076)EGR 154.34 3.26E-16 0 51351 61110 51455 12620 80826 58268 68109 63801 55292 61103 TRUE FALSE FALSE 47751.56008 56267.42104 71379.75401 29379.99778 70688.04941 51079.48659 51067.40782 49274.90507 60084.75508 45802.41109 1.042555598 1.228481639 1.558427871 0.641450899 1.543325946 1.115213924 1.114950209 1.075814655 1.311825156 1 15.48313592 -11.29116004 2.204031683 0.203836598 1.181582429 0.045339878 0.249626834 14018876.91 3412297.16 54845097.38 0.059345395 5.11E-12 11.29116004 0.977745831 THCAATPSSSEDTETVSNSS(ph)EGRASPHDVLETIFVR ddPTM_HeLa_A485_30min_R1 1 THCAATPSSSEDTETVSNSSEGRASPHDVLETIFVR 36 1 O75143-4;O75143-3;O75143-2;O75143;O75143-5;H0YEM7 O75143-4 ATG13 Autophagy-related protein 13 1 0 THCAATPS(0.001)S(0.001)S(0.001)EDT(0.008)ET(0.008)VS(0.007)NS(0.143)S(0.387)EGRAS(0.387)PHDVLET(0.057)IFVR 53.793 0.010964 165110000 10517 12151 15616 10384 19275 11186 13642 20946 10496 11056 TRUE FALSE FALSE 12856.47037 13571.95375 21393.00824 10951.25163 17355.91332 11771.68166 10727.27526 15808.96066 12602.45092 8299.942671 1.548983032 1.635186445 2.577488675 1.31943702 2.091088338 1.418284695 1.292451729 1.904707211 1.518378069 1 13.01888566 -6.283414895 24.40943776 1.474913964 1.836036834 0.217499144 0.381191854 1076.386297 1195598.103 0.131687537 0.116239204 5.21E-07 6.283414895 0.36112287 THCVGDSQSSASS(ph)PPATSK ddPTM_HeLa_A485_30min_R1 1 THCVGDSQSSASSPPATSK 19 0 Q9H4Z2-2;Q9H4Z2 Q9H4Z2-2 ZNF335 Zinc finger protein 335 1 0 THCVGDSQSSAS(0.036)S(0.964)PPATSK 166.91 1.29E-12 108080000 97897 113690 81984 95740 149940 101040 146440 162290 101720 148030 TRUE FALSE FALSE 119673.8499 126985.0565 112313.2932 100970.0338 135011.4471 106330.2982 115151.8977 122488.123 122134.271 111128.8453 1.076892769 1.142683128 1.01065833 0.908585287 1.214909115 0.956819968 1.036201694 1.102217185 1.099033025 1 16.76187381 -7.240136134 23.88850957 1.075468846 1.048996413 0.005834263 0.085961631 2555.766017 2865923.094 0.040420295 0.023298956 5.75E-08 7.240136134 -0.026472433 THCVGDSQSSASS(ph)PPATSK ddPTM_HeLa_A486_30min_R1 4 THCVGDSQSSASSPPATSK 19 0 Q9H4Z2-2;Q9H4Z2 Q9H4Z2-2 ZNF335 Zinc finger protein 335 1 0 THCVGDSQSSAS(0.023)S(0.976)PPATSK;THCVGDSQS(0.001)S(0.002)AS(0.284)S(0.712)PPAT(0.001)SK;THCVGDSQSSAS(0.087)S(0.912)PPATSK;THCVGDSQSSAS(0.031)S(0.969)PPATSK ;;; 141.53 8.61E-10 210601000 367646 320042 237241 82772 351129 354553 393337 364457 319195 351847 TRUE FALSE FALSE 341875.9139 294680.7063 329107.0687 192697.3991 307087.1267 310811.8557 294919.9223 281478.0971 346863.0796 263742.2211 1.296250227 1.117305774 1.247836116 0.730627801 1.164345722 1.178468333 1.11821278 1.067247011 1.31515947 1 18.00876902 THDHQLESSLS(ph)PVEVFAK ddPTM_HeLa_A485_30min_R1 2 THDHQLESSLSPVEVFAK 18 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 THDHQLES(0.002)S(0.008)LS(0.989)PVEVFAK;T(0.01)HDHQLES(0.067)S(0.132)LS(0.792)PVEVFAK ; 184.34 5.86E-18 317530000 249940 286580 206241 264790 368060 256900 367630 412170 257270 388200 TRUE FALSE FALSE 305538.2907 320093.0381 282538.1283 279254.8072 331414.6541 270350.8868 289082.8472 311084.6612 308901.7292 291428.8843 1.048414578 1.098357285 0.969492537 0.958226251 1.137205925 0.927673616 0.991949882 1.067446221 1.059955776 1 18.15278435 -4.748684379 24.9141867 1.014941157 1.073385932 0.139989135 0.058846016 448.3493328 875738.8938 0.015066247 0.039289875 1.78E-05 4.748684379 0.058444774 THDHQLESSLS(ph)PVEVFAK ddPTM_HeLa_A486_30min_R1 4 THDHQLESSLSPVEVFAK 18 0 Q5JW53;Q9H410-4;Q9H410 Q5JW53 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 T(0.229)HDHQLES(0.229)S(0.229)LS(0.314)PVEVFAK;THDHQLESS(0.008)LS(0.991)PVEVFAK;T(0.011)HDHQLES(0.08)S(0.08)LS(0.828)PVEVFAK;T(0.013)HDHQLES(0.031)S(0.132)LS(0.824)PVEVFAK ;;; 169.08 2.26E-12 658091000 508166 473949 355574 87656.4 497197 496692 563716 576083 413068 502142 TRUE FALSE FALSE 472546.1876 436391.5551 493261.7754 204068.5291 434833.9161 435415.191 422668.2944 444921.4767 448873.0668 376402.3748 1.255428284 1.159375138 1.310464036 0.542155265 1.155236909 1.156781201 1.12291612 1.182036848 1.192535162 1 18.5219162 THILLFLPK ddPTM_HeLa_A485_30min_R1 2 THILLFLPK 9 0 H7BZ94;P07237;I3L398;I3L4M2;I3L312 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ; ; 92.062 0.010708 214790000 845550 950020 728070 1097820 1296390 940490 1443460 1492940 733010 1524580 FALSE FALSE TRUE 1033639.68 1061116.575 997413.3905 1157791.127 1167316.86 989732.6021 1135052.979 1126794.124 880118.3834 1144530.264 0.903112581 0.927119718 0.871460915 1.011586293 1.019909125 0.864750049 0.991719498 0.984503564 0.768977817 1 20.12632418 -5.233860775 24.9379601 0.949384238 0.903219944 0.080191974 0.074645647 2088.93255 1888914.514 0.020054977 0.03472374 5.84E-06 5.233860775 -0.046164294 THILLFLPK ddPTM_HeLa_A486_30min_R1 2 THILLFLPK 9 0 H7BZ94;P07237;I3L398;I3L4M2;I3L312 H7BZ94 P4HB Protein disulfide-isomerase 0 0 ; ; 90.629 0.011909 269080000 1096100 935830 555790 416200 908440 996290 1282840 1195650 912060 1415800 FALSE FALSE TRUE 1019269.05 861671.4226 771006.7726 968934.6336 794494.9843 873377.8693 961859.8635 923426.5959 991118.0952 1061274.465 0.960419839 0.811921375 0.726491401 0.912991564 0.748623481 0.82295193 0.906325268 0.87011101 0.933894226 1 20.01736638 -7.769697761 0.887719516 0.997921489 0.82732067 0.379974239 0.067385485 0.570296603 0.970262099 0.06330229 0.023182529 1.70E-08 7.769697761 -0.170600819 THINIVVIGHVDSGK ddPTM_HeLa_A485_30min_R1 2 THINIVVIGHVDSGK 15 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A6PW80;Q5JR01;A0A2R8Y660;A0A2R8YDN5 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ; ; 218.28 1.05E-22 512530000 1552570 1323020 901460 1649850 1277380 1060580 1879980 2277360 880500 2729300 FALSE FALSE TRUE 1897933.84 1477735.68 1234947.567 1739977.128 1150199.562 1116110.329 1478306.915 1718833.889 1057208.274 2048935.739 0.926302277 0.721221096 0.602726354 0.8492102 0.56136439 0.544726859 0.721499892 0.838891067 0.515979224 1 20.96644331 -10.14211769 6.404243442 1.000000972 0.696629528 0.312788432 0.134281598 1.84E-06 2.47E-07 0.128346242 0.031128437 7.21E-11 10.14211769 -0.303371445 THINIVVIGHVDSGK ddPTM_HeLa_A486_30min_R1 2 THINIVVIGHVDSGK 15 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A6PW80;Q5JR01;A0A2R8Y660;A0A2R8YDN5 P68104 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ; ; 152.37 3.70E-07 367350000 1321280 795320 472590 654050 820360 971980 1278900 829870 565990 1130990 FALSE FALSE TRUE 1228665.095 732295.9467 655589.5044 1522661.454 717462.7992 852066.99 958905.6932 640926.7169 615050.4689 847782.7425 1.44926882 0.863777841 0.77329895 1.796051485 0.846281439 1.005053473 1.131074797 0.756003496 0.725481232 1 19.69333507 -7.257972615 24.0376927 0.805556762 1.110726304 0.170140163 0.29787751 308.5237335 2139256.816 0.145734877 0.079678228 5.52E-08 7.257972615 0.305169543 THKHS(ph)PEKR ddPTM_HeLa_A486_30min_R1 2 THKHSPEKR 9 2 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 0 T(0.053)HKHS(0.947)PEKR;T(0.004)HKHS(0.996)PEKR ; 47.288 0.022699 16991600 12706.9 11656.2 5583.3 14216.5 7568.7 21931 22764 21466 17983.3 31868 TRUE FALSE FALSE 11816.21193 10732.52026 7745.303286 33096.73046 6619.363071 19225.3762 17068.20643 16578.6604 19542.10692 23888.04537 0.494649593 0.449284154 0.324233447 1.385493453 0.277099401 0.804811608 0.714508289 0.694014941 0.818070571 1 14.54400119 -4.189681857 0.156522748 1.022667397 1.92E-22 0.185714575 0.28678056 44.88147252 1.18864955 1.229060376 9.481777401 6.46E-05 4.189681857 -1.022667397 THMTHHAVSDHEATLR ddPTM_HeLa_A485_30min_R1 1 THMTHHAVSDHEATLR 16 0 A0A140T913;A0A140T9X5;A0A140T9I0;Q53Z42;A0A140T975;A0A140T8W8;A0A140T8Y4;Q5RJ27;B0UXQ0;Q5SPM2;A0A1W2PRT9;A0A140T9Z6;A0A1W2PS39;A0A1W2PPF8;A0A1W2PPQ2;Q9GJ45;A0A1W2PR61;A0A1W2PQS8;A0A140T955;A0A140T941;A0A140T933;A0A0G2JPD3 A0A140T913 HLA-A 0 0 187.37 3.82E-18 57406000 13017 24995 16280 9443.1 10584 22284 11883 22913 18965 12802 FALSE FALSE TRUE 15912.58674 27917.94782 22302.64947 9958.952642 9530.219797 23450.75578 9344.099975 17293.55082 22771.10154 9610.697003 1.655716202 2.904882738 2.320606867 1.036236252 0.991626288 2.440068163 0.972260386 1.799406517 2.369349646 1 13.23042535 -5.183987388 9.335411909 1.543261309 2.358115256 0.262251817 0.593988568 0.594761515 68.25400528 0.159240718 0.276358553 6.55E-06 5.183987388 0.814853947 THNDIIHNENMR ddPTM_HeLa_A485_30min_R1 8 THNDIIHNENMR 12 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;;;;;; ;;;;;;; 249.75 3.89E-28 2630809000 414208 540703 450016 473288 610741 542489 636943 749836 477846 684615 FALSE FALSE TRUE 506347.1406 603933.5124 616495.6451 499142.525 549933.4816 570892.8852 500854.9247 565937.5453 573745.3091 513953.0799 0.985201102 1.175075189 1.199517367 0.97118306 1.070007172 1.110787944 0.974514881 1.101146325 1.116337914 1 18.97127713 -5.257340072 24.99978865 1.053682843 1.125445609 0.161847303 0.072993009 656.5533163 4004012.369 0.01995042 0.032979756 5.53E-06 5.257340072 0.071762766 THNDIIHNENMR ddPTM_HeLa_A486_30min_R1 4 THNDIIHNENMR 12 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;; ;;; 249.75 3.89E-28 753446000 149375 139622.6 118779 54105 180491 142044.5 149814 161902 125542 145886 FALSE FALSE TRUE 138904.5839 128558.3967 164773.4098 125959.1743 157852.1358 124520.4938 112328.9526 125040.4489 136424.0816 109355.196 1.270214758 1.175603916 1.50677257 1.151835293 1.443480891 1.138679261 1.027193555 1.143433997 1.247531773 1 16.73866225 -6.421591617 8.060575952 1.111815829 1.303972988 0.412842996 0.118516087 0.312621898 22.33253729 0.040269371 0.035438055 3.79E-07 6.421591617 0.192157159 THPYS(ph)PK ddPTM_HeLa_A485_30min_R1 4 THPYSPK 7 0 M0QZ39;M0R1C6;M0QXT0;B4DLJ1;Q15853-4;Q15853-3;Q15853-2;Q15853;H0YD59;E9PME6;B1AQP1;P22415-2;P22415 M0QZ39 USF2;USF1 Upstream stimulatory factor 2;Upstream stimulatory factor 1 1 0 THPYS(1)PK;THPYS(1)PK;THPYS(1)PK;THPYS(1)PK ;;; 135.71 0.0015922 1958010000 5206560 5125950 3500920 7467610 6891940 5384610 8648340 8250820 4623320 10233500 TRUE FALSE FALSE 6364741.31 5725385.263 4796055.993 7875546.625 6205754.255 5666539.853 6800551.509 6227293.458 5551177.916 7682476.784 0.828475177 0.74525253 0.624285127 1.025131198 0.807780411 0.737592838 0.885203002 0.810584091 0.722576595 1 22.87314007 -11.32294043 2.297542384 2.104945374 0.799896241 0.262292122 0.101334309 10109117.25 855162.3163 58505676.34 0.025404017 4.75E-12 11.32294043 -1.305049133 THPYS(ph)PK ddPTM_HeLa_A486_30min_R1 4 THPYSPK 7 0 M0QZ39;M0R1C6;M0QXT0;B4DLJ1;Q15853-4;Q15853-3;Q15853-2;Q15853;H0YD59;E9PME6;B1AQP1;P22415-2;P22415 M0QZ39 USF2;USF1 Upstream stimulatory factor 2;Upstream stimulatory factor 1 1 0 THPYS(1)PK;THPYS(1)PK;THPYS(1)PK;THPYS(1)PK ;;; 123.35 0.0017882 2250960000 8198290 7199590 3648470 3716410 6569770 8063670 9922560 9474960 5983020 12107400 TRUE FALSE FALSE 7623632.207 6629068.268 5061255.293 8651990.297 5745728.186 7068856.381 7439830.538 7317718.445 6501632.991 9075628.234 0.840011513 0.730425277 0.557675476 0.953321365 0.633094265 0.778883423 0.819759288 0.806304341 0.716383794 1 23.11356608 -14 0.276480248 2.727306667 0.7423886 0.317599125 0.105045255 260.9791195 2.517358604 258.1192303 0.119856329 1.00E-14 14 -1.984918067 THQPERPRS(ph)PAAR ddPTM_HeLa_A485_30min_R1 3 THQPERPRSPAAR 13 2 G3V2Q8;Q9P2Y4 G3V2Q8 ZNF219 Zinc finger protein 219 1 0 THQPERPRS(1)PAAR;THQPERPRS(1)PAAR;THQPERPRS(1)PAAR ;; 101.78 0.00029626 324928000 45079 74342 64805 55553 100250 74465 95692 116598 60713 90733 TRUE FALSE FALSE 55106.66803 83035.65021 88779.06626 58587.71972 90268.758 78363.87226 75246.62247 88002.15768 72897.54221 68114.93292 0.809024771 1.219052074 1.303371558 0.86013033 1.325241825 1.150465381 1.104700823 1.29196571 1.070213815 1 16.0556835 -4.254990245 24.46115522 1.156603132 0.809024559 0.343998247 0.139577286 592.9071216 2248776.96 0.032749715 0.300555762 5.56E-05 4.254990245 -0.347578573 THQPERPRS(ph)PAAR ddPTM_HeLa_A486_30min_R1 2 THQPERPRSPAAR 13 2 G3V2Q8;Q9P2Y4 G3V2Q8 ZNF219 Zinc finger protein 219 1 0 THQPERPRS(1)PAAR;THQPERPRS(1)PAAR ; 61.102 0.012354 117466000 34080 31945 34104.4 14554 48228 30370 46173 42498 28450 38631 TRUE FALSE FALSE 31691.16799 29413.56186 47310.53703 33882.44752 42178.79453 26623.25818 34620.02703 32822.13312 30916.06891 28957.54615 1.094401018 1.015747733 1.633789575 1.170073159 1.456573506 0.919389303 1.195544224 1.133456991 1.067634279 1 14.82165173 -6.26542634 24.99852703 1.079817233 1.273964745 0.254891265 0.179181143 564.811383 3541395.146 0.062543736 0.057169161 5.43E-07 6.26542634 0.194147512 THQT(ph)QPGIRR ddPTM_HeLa_A486_30min_R1 1 THQTQPGIRR 10 1 Q7Z628-2;Q7Z628 Q7Z628-2 NET1 Neuroepithelial cell-transforming gene 1 protein 1 0 T(0.003)HQT(0.997)QPGIRR 59.898 0.02613 290060000 129630 238560 186840 143820 364050 267560 355600 389380 171920 256340 TRUE FALSE FALSE 120543.6064 219655.6368 259189.4517 334820.2283 318387.4544 234551.1676 266625.1188 300726.6741 186822.164 192150.7955 0.627338576 1.143141959 1.348885655 1.742486818 1.656966621 1.220661965 1.387582696 1.565055577 0.972268491 1 17.55187942 -4.337505558 2.172620352 1.401649977 0.495656313 0.451107742 0.242691096 0.463593316 2.83492667 0.064506978 0.764461923 4.60E-05 4.337505558 -0.905993664 THS(ph)AGTSPTITHQK ddPTM_HeLa_A485_30min_R1 1 THSAGTSPTITHQK 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 T(0.116)HS(0.386)AGT(0.248)S(0.248)PT(0.001)ITHQK 58.164 0.024958 193430000 157850 169360 138990 214790 216850 171190 287230 283380 167330 323690 TRUE FALSE FALSE 192963.1879 189165.1788 190408.1849 226523.4338 195259.6526 180153.2437 225860.964 213880.6107 200911.5962 243000.0401 0.794087062 0.778457397 0.783572648 0.932195047 0.803537532 0.741371251 0.929468835 0.880166977 0.826796556 1 17.89059703 -14 0.119982901 1.561520523 0.747399625 0.474005913 0.057813218 142.1295344 1.103881283 19.27467583 0.579855155 1.00E-14 14 -0.814120899 THS(ph)FENVSCHLPDSR ddPTM_HeLa_A485_30min_R1 2 THSFENVSCHLPDSR 15 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 T(0.351)HS(0.649)FENVSCHLPDSR;T(0.11)HS(0.89)FENVSCHLPDSR ; 180.08 7.48E-18 1473600000 455860 687590 760960 343870 1029880 544890 851270 868610 746390 842220 TRUE FALSE FALSE 557264.4843 767997.6693 1042470.77 362654.7474 927341.5311 573419.5978 669389.2103 655582.0356 896183.6267 632270.0539 0.881370991 1.214667158 1.648774545 0.573575714 1.466685834 0.906921962 1.058707756 1.036870292 1.417406409 1 19.27018137 -5.237701471 24.99738857 1.07707027 1.244910351 0.074778437 0.292260365 2422.270813 2550788.059 0.07621309 0.131908378 5.78E-06 5.237701471 0.167840082 THS(ph)FENVSCHLPDSR ddPTM_HeLa_A486_30min_R1 2 THSFENVSCHLPDSR 15 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 T(0.233)HS(0.767)FENVSCHLPDSR;T(0.339)HS(0.661)FENVSCHLPDSR ; 162.32 4.89E-12 1242970000 826540 848860 578780 89728 883030 818610 973330 990210 898430 694100 TRUE FALSE FALSE 768603.8143 781593.2421 802899.1163 208891.3186 772272.1435 717618.2212 729792.5392 764760.7991 976306.6358 520292.8422 1.477252332 1.502217941 1.543167715 0.401487973 1.48430284 1.3792583 1.402657273 1.469866078 1.87645602 1 18.98896433 THS(ph)GEKPYECYICHAR ddPTM_HeLa_A485_30min_R1 1 THSGEKPYECYICHAR 16 1 A0A2R8Y595;A0A2R8YFL0;P49711;P49711-2 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 T(0.014)HS(0.985)GEKPYECYICHAR 102.43 0.00022734 195180000 86005 70000 52711 119940 123090 73914 126140 113390 58449 173240 TRUE FALSE FALSE 105136.5155 78185.89108 72210.99239 126492.0185 110834.7274 77784.02275 99189.15853 85580.92471 70179.17817 130054.4562 0.808403792 0.601178101 0.555236587 0.972608107 0.852217837 0.598088101 0.762674047 0.658039157 0.539613791 1 16.98875631 THS(ph)GEKPYECYICHAR ddPTM_HeLa_A486_30min_R1 2 THSGEKPYECYICHAR 16 1 A0A2R8Y595;A0A2R8YFL0;P49711;P49711-2 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 T(0.119)HS(0.88)GEKPYECYICHAR;T(0.075)HS(0.925)GEKPYECYICHAR ; 126.22 1.28E-05 277536000 154147 115904 78160 89910 139763 151918 214990 189619 110507 205366 TRUE FALSE FALSE 143342.0913 106719.3449 108425.6452 209315.0238 122232.6213 133175.9017 161197.2281 146446.8931 120085.8357 153941.0169 0.931149438 0.693248278 0.704332396 1.359709245 0.794022436 0.865109926 1.047136308 0.951318213 0.780076929 1 17.23201816 THS(ph)GEKPYQCEYCLQYFSR ddPTM_HeLa_A486_30min_R1 1 THSGEKPYQCEYCLQYFSR 19 1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 T(0.164)HS(0.836)GEKPYQCEYCLQYFSR 197.99 1.18E-25 393470000 149760 135770 79817 76476 143070 158840 197790 199540 122770 218290 TRUE FALSE FALSE 139262.5974 125011.0907 110724.28 178039.9929 125124.8265 139243.9358 148300.85 154109.0979 133411.8024 163628.7632 0.851088737 0.763992151 0.676679808 1.088072717 0.764687235 0.850974688 0.906325069 0.941821566 0.815332218 1 17.32006685 -1.000047133 0.03642235 1.413630989 2.65E-09 0.190181337 0.104238695 1520.851687 4.238920245 47.61179926 139.1900681 0.099989148 1.000047133 -1.413630987 THS(ph)QGGYGSQGYK ddPTM_HeLa_A485_30min_R1 2 THSQGGYGSQGYK 13 0 K7ERS0;K7EPH2;K7ER00;Q9Y285-2;Q9Y285 K7ERS0 FARSA Phenylalanine--tRNA ligase alpha subunit 1 0 T(0.157)HS(0.842)QGGY(0.001)GSQGYK;T(0.16)HS(0.84)QGGYGSQGYK ; 149.95 5.91E-08 265860000 377600 362460 281120 525720 538180 359370 636910 513240 405460 751380 TRUE FALSE FALSE 461595.8173 404846.544 385117.9864 554438.7524 484596.9095 378186.0575 500828.9754 387367.0853 486832.1029 564074.7941 0.818323779 0.717717842 0.682742768 0.982917085 0.85910045 0.670453744 0.887876893 0.686730003 0.863063033 1 19.10552695 -8.011333467 23.87893209 1.000000009 0.789630912 0.309804257 0.096979108 368.4175131 776235.8513 0.093573883 0.024160673 9.74E-09 8.011333467 -0.210369097 THS(ph)QGGYGSQGYK ddPTM_HeLa_A486_30min_R1 2 THSQGGYGSQGYK 13 0 K7ERS0;K7EPH2;K7ER00;Q9Y285-2;Q9Y285 K7ERS0 FARSA Phenylalanine--tRNA ligase alpha subunit 1 0 T(0.16)HS(0.84)QGGYGSQGYK;T(0.119)HS(0.881)QGGYGSQGYK ; 169.25 3.66E-12 738220000 427570 435350 241010 119523 404780 526750 615740 585090 366420 526660 TRUE FALSE FALSE 397599.551 400851.2805 334335.5265 278255.5844 354008.718 461764.9406 461675.3394 451877.7794 398181.5806 394780.908 1.007139765 1.01537656 0.846888792 0.704835464 0.896721981 1.169673941 1.169446977 1.144629262 1.008614076 1 18.5906927 -6.250071369 23.43057478 1.111948058 0.8877771 0.516377807 0.098318525 265.3372228 546885.4016 0.035614719 0.035261961 5.62E-07 6.250071369 -0.224170959 THS(ph)TSSSLGSGESPFSR ddPTM_HeLa_A485_30min_R1 2 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 0 T(0.174)HS(0.575)T(0.174)S(0.071)S(0.004)S(0.001)LGSGESPFSR;T(0.089)HS(0.626)T(0.142)S(0.142)S(0.001)SLGSGESPFSR ; 193.67 2.18E-18 1967850000 264380 405150 374120 203379 499110 237300 410610 442580 285930 339160 TRUE FALSE FALSE 323190.4189 452528.7682 512522.5564 214489.0798 449416.8559 249724.6611 322879.8191 334036.5611 343313.5283 254613.6538 1.269336558 1.777315401 2.012942153 0.842409967 1.765093306 0.980798388 1.268116671 1.311934989 1.348370455 1 17.95795026 -5.254800087 24.99647037 1.244838111 1.695609747 0.345532801 0.294469706 605.2805291 2278833.067 0.077075253 0.12965216 5.56E-06 5.254800087 0.450771636 THS(ph)TSSSLGSGESPFSR ddPTM_HeLa_A486_30min_R1 2 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 0 THS(0.478)T(0.478)S(0.038)S(0.003)S(0.003)LGSGESPFSR;THS(0.48)T(0.48)S(0.04)SSLGSGESPFSR ; 278.08 1.74E-59 945640000 310790 337710 271230 71345 361500 286940 325270 342130 281110 223090 TRUE FALSE FALSE 289005.2259 310948.6297 376257.5198 166094.7656 316157.2991 251540.2602 243884.0056 264234.4676 305476.8411 167226.8119 1.72822302 1.859442431 2.249983214 0.993230473 1.890589765 1.504186185 1.45840253 1.580096305 1.82672167 1 17.35144665 -11.69211078 0.142842213 8.73E-19 1.938858622 0.296019458 0.313831185 82.77103982 1.364408946 29.71444208 2.104952056 2.03E-12 11.69211078 1.938858622 THSAGT(ph)SPTITHQK ddPTM_HeLa_A486_30min_R1 1 THSAGTSPTITHQK 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 T(0.031)HS(0.125)AGT(0.421)S(0.421)PT(0.003)ITHQK 69.805 0.013438 186990000 170230 160730 103620 89459 172300 197900 251060 220970 143810 249490 TRUE FALSE FALSE 158297.7561 147993.1694 143744.439 208265.073 150688.5274 173485.1101 188242.1326 170659.9547 156275.5666 187016.0801 0.846439279 0.791339276 0.768620746 1.113621208 0.805751716 0.927648093 1.006555867 0.91254161 0.835626362 1 17.5128028 THSAGTS(ph)PTITHQK ddPTM_HeLa_A485_30min_R1 1 THSAGTSPTITHQK 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 T(0.02)HS(0.021)AGT(0.24)S(0.712)PT(0.008)ITHQK 87.669 0.0011463 194660000 167800 151230 130740 214660 230230 159710 318030 302840 166040 344430 TRUE FALSE FALSE 205126.5311 168915.033 179106.1665 226386.3323 207307.4928 168072.1686 250080.2924 228568.0152 199362.705 258569.9398 0.793311594 0.65326632 0.692679771 0.875532293 0.801746301 0.650006605 0.967166921 0.883969789 0.771020426 1 17.98019504 -13.82006486 0.046163695 1.973474153 0.269775639 0.394740618 0.090843799 624.8016533 2.201595838 78.36324823 20.34812369 1.51E-14 13.82006486 -1.703698514 THSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLR ddPTM_HeLa_A485_30min_R1 1 THSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLR 36 1 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 101.11 2.78E-10 6455600 15225 17174 13541 14373 21572 15542 23685 25081 15376 23193 FALSE FALSE TRUE 18611.74872 19182.34991 18550.37939 15158.1606 19424.21594 16355.75509 18624.50626 18929.84542 18461.82216 17411.41194 1.068939658 1.101711336 1.065414997 0.870587673 1.115602572 0.939369831 1.069672369 1.087209096 1.060328837 1 14.08774558 -10.07935456 13.73300073 1 1.04076697 0.028751607 0.073029611 0 0 0.070059284 0.016991872 8.33E-11 10.07935456 0.04076697 THSLCNGDS(ph)PGPVQK ddPTM_HeLa_A485_30min_R1 2 THSLCNGDSPGPVQK 15 0 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7 A0A1B0GWK2 KAZN Kazrin 1 0 THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK ; 238.64 1.08E-33 457100000 681950 621360 520570 996970 981090 682100 1010150 994060 642210 1281860 TRUE FALSE FALSE 833647.4248 694022.6469 713150.5057 1051431.947 883409.2348 717813.7013 794323.2003 750265.2264 771095.6563 962315.8929 0.866292899 0.721200442 0.741077344 1.092605821 0.918003372 0.745923149 0.825428746 0.77964547 0.801291615 1 19.87615103 -11.37396095 2.20128459 2.116521086 0.832302676 0.189470143 0.104003167 19044779.8 2472273.332 105417891.6 0.027979761 4.23E-12 11.37396095 -1.28421841 THSLCNGDS(ph)PGPVQK ddPTM_HeLa_A486_30min_R1 3 THSLCNGDSPGPVQK 15 0 A0A1B0GWK2;Q674X7-4;Q674X7-3;Q674X7-2;Q674X7 A0A1B0GWK2 KAZN Kazrin 1 0 THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK ;; 211.16 3.24E-23 566920000 864020 890930 496270 370030 861620 942400 1089570 1040780 742120 1185300 TRUE FALSE FALSE 803456.6598 820329.4621 688439.0346 861448.5403 753547.5853 826136.2696 816948.0617 803817.1141 806447.5591 888493.165 0.904291323 0.92328168 0.774838864 0.969561246 0.848118607 0.929817248 0.91947591 0.904697015 0.907657584 1 19.76100115 -13.99996499 0.177435009 1.423092956 0.875052011 0.295055182 0.049270978 164.8677108 1.578975744 24.45608431 0.152876821 1.00E-14 13.99996499 -0.548040945 THST(ph)SSSLGSGESPFSR ddPTM_HeLa_A485_30min_R1 1 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 0 THS(0.023)T(0.318)S(0.318)S(0.318)S(0.023)LGSGESPFSR 324.6 2.90E-79 723660000 235700 385470 332390 153290 468640 209900 302200 327410 226550 268880 TRUE FALSE FALSE 288130.6518 430547.3634 455354.8929 161663.8445 421980.5561 220890.0394 237632.5013 247112.1841 272016.507 201853.1644 1.427426975 2.132973068 2.255871957 0.800898242 2.090532281 1.094310511 1.177254278 1.224217539 1.347595951 1 17.62294668 -5.772378957 0.888087147 1.180943197 1.90197981 0.29034835 0.413777234 0.777648977 1.326992781 0.207132884 0.333432575 1.69E-06 5.772378957 0.721036613 THT(ph)GEKPYACSHCDK ddPTM_HeLa_A486_30min_R1 2 THTGEKPYACSHCDK 15 1 A0A2R8Y595;A0A2R8YFL0;P49711;P49711-2 A0A2R8Y595 CTCF Transcriptional repressor CTCF 1 0 T(0.031)HT(0.969)GEKPYACSHCDK;T(0.011)HT(0.989)GEKPYACSHCDK ; 169.39 4.20E-12 430420000 215937 211233 74207 159058 173648 279770 352020 327370 167106 408700 TRUE FALSE FALSE 200800.9314 194494.1278 102941.9377 370295.0623 151867.4486 245254.8219 263940.8727 252834.9974 181590.8826 306358.8598 0.655443526 0.6348572 0.336017499 1.20869709 0.495717502 0.800547508 0.861541504 0.825290307 0.592739125 1 18.22486305 -6.059833503 0.059112375 1.444987544 3.24E-11 0.147242286 0.221578524 154.0820837 3.201466605 31.67166707 45.76986083 8.71E-07 6.059833503 -1.444987544 THT(ph)GEKPYR ddPTM_HeLa_A485_30min_R1 1 THTGEKPYR 9 1 Q8N8E2-2;Q8N8E2;Q9HCG1;M0QZI7;P17017;A0A087X2B0;A0A0A0MP75;G5E9B8;E7EN86;F5H032;Q9UJW8;P52747;Q9NX65;Q9UJW8-3;Q9UJW8-2;O94892;A0A1W2PQ54;Q9UJW8-4;P52747-2;P52747-3;Q86UD4;Q86TJ5;Q7Z3I7;Q15937;Q9BSK1;Q9NX65-2;Q499Z4;Q9BSK1-2;Q9NX65-3;Q8WXB4;Q99612 Q8N8E2-2;Q99612 ZNF513;ZNF160;ZNF14;ZNF79;ZNF180;ZNF143;ZSCAN32;ZNF432;ZNF329;ZNF554;ZNF572;ZNF577;ZNF672;ZNF606;KLF6 Zinc finger protein 513;Zinc finger protein 160;Zinc finger protein 14;Zinc finger protein 180;Zinc finger protein 143;Zinc finger and SCAN domain-containing protein 32;Zinc finger protein 432;Zinc finger protein 329;Zinc finger protein 554;Zinc finger protein 572;Zinc finger protein 79;Zinc finger protein 577;Zinc finger protein 672;Zinc finger protein 606;Krueppel-like factor 6 1 0 T(0.016)HT(0.984)GEKPYR 75.695 0.012424 30976000 20227 18405 12646 32355 21814 23297 29059 30188 19356 52559 TRUE FALSE FALSE 24726.42637 20557.30465 17324.28164 34122.47172 19642.12157 24516.7949 22850.30726 22784.34567 23240.57166 39457.00858 0.626667537 0.521005149 0.439067285 0.864801285 0.497810713 0.621354628 0.579119099 0.577447366 0.589009976 1 15.26799396 -10.01257573 3.456330607 1.000145554 0.589689848 0.569076795 0.106847982 10852473.92 18700755.38 20436.79258 0.027455621 9.71E-11 10.01257573 -0.410455706 THT(ph)GERPYK ddPTM_HeLa_A486_30min_R1 1 THTGERPYK 9 1 Q9H5H4;H3BS42;I3L538;L0B1S6;A0A087WSX5;K7EIH1;A0A087X1C2;B4DI05;A0A1W2PQA1;L0B3Z2;I3L4C4;K7EL41;A0A0G2JMF9;P0CH99;Q9HBT7;Q6ECI4;Q6ZMW2;O14978;Q6ECI4-2;Q9UJL9;O60304;A8MWA4;Q96BR6;O60304-2;Q9UJL9-2;Q96BR6-2;P0CI00;Q6ZN79;Q13127-3;A8MVS1;Q5EBL2;Q9UEG4;L0B1V4;Q13127 Q9H5H4;Q9UEG4;L0B1V4;Q13127 ZNF768;ZNF263;REST;ZNF628;ZNF500;ZNF705D;ZNF287;ZNF470;ZNF782;ZFP69B;ZNF705E;ZNF669;ZNF705B;ZNF705A;ZNF705F;ZNF629 Zinc finger protein 768;Zinc finger protein 705D;Zinc finger protein 287;Zinc finger protein 470;Zinc finger protein 782;Zinc finger protein 263;Zinc finger protein ZFP69B;Zinc finger protein 500;Putative zinc finger protein 705E;Zinc finger protein 669;Putative zinc finger protein 705B;Zinc finger protein 705A;RE1-silencing transcription factor;Zinc finger protein 705F;Zinc finger protein 628;Zinc finger protein 629 1 0 T(0.003)HT(0.997)GERPYK 88.187 0.0043209 75875000 48673 38339 25756 27429 41663 54880 65810 56689 36862 80555 TRUE FALSE FALSE 45261.27405 35300.87801 35729.41297 63856.09818 36437.23805 48109.46358 49343.64193 43782.15221 40057.22784 60383.50367 0.749563561 0.584611291 0.591708178 1.057508993 0.603430338 0.796731899 0.817170898 0.725068099 0.663380318 1 15.88186685 -11.746205 2.048585964 9.99950823 0.733639716 0.263524779 0.134321019 3712756.2 153783.2814 155734649.4 0.036094832 1.79E-12 11.746205 -9.265868514 THT(ph)TALAGRSPS(ph)PASGR ddPTM_HeLa_A485_30min_R1 1 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 T(0.006)HT(0.786)T(0.174)ALAGRS(0.035)PS(0.916)PAS(0.084)GR 231.19 1.35E-33 334600000 0 0 4168.7 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 5710.875604 0 0 0 0 0 0 0 0 THTDS(ph)SEKELEPEAAEEALENGPK ddPTM_HeLa_A485_30min_R1 1 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 0 T(0.17)HT(0.17)DS(0.33)S(0.33)EKELEPEAAEEALENGPK 109.53 0.00017189 50720000 66184 42365 24637 124150 61830 59924 114400 105150 40266 161390 TRUE FALSE FALSE 80906.40247 47319.21822 33751.25153 130932.0001 55673.9881 63061.52798 89957.50544 79361.79763 48347.01686 121158.4432 0.66777354 0.390556506 0.278571189 1.080667568 0.459513895 0.520488101 0.742478222 0.655024904 0.399039601 1 16.88653542 -11.01055262 2.92389927 1.451269446 0.579695322 0.255847688 0.21631888 214711435.8 196764999.7 650175013.9 0.053651912 9.76E-12 11.01055262 -0.871574124 THTGEK(ac)PYR ddPTM_HeLa_A485_30min_R1 2 THTGEKPYR 9 1 Q8N8E2-2;Q8N8E2;Q9HCG1;M0QZI7;P17017;A0A087X2B0;A0A0A0MP75;G5E9B8;E7EN86;F5H032;Q9UJW8;P52747;Q9NX65;Q9UJW8-3;Q9UJW8-2;O94892;A0A1W2PQ54;Q9UJW8-4;P52747-2;P52747-3;Q86UD4;Q86TJ5;Q7Z3I7;Q15937;Q9BSK1;Q9NX65-2;Q499Z4;Q9BSK1-2;Q9NX65-3;Q8WXB4;Q99612 Q8N8E2-2;Q99612 ZNF513;ZNF160;ZNF14;ZNF79;ZNF180;ZNF143;ZSCAN32;ZNF432;ZNF329;ZNF554;ZNF572;ZNF577;ZNF672;ZNF606;KLF6 Zinc finger protein 513;Zinc finger protein 160;Zinc finger protein 14;Zinc finger protein 180;Zinc finger protein 143;Zinc finger and SCAN domain-containing protein 32;Zinc finger protein 432;Zinc finger protein 329;Zinc finger protein 554;Zinc finger protein 572;Zinc finger protein 79;Zinc finger protein 577;Zinc finger protein 672;Zinc finger protein 606;Krueppel-like factor 6 0 1 ; THTGEK(1)PYR;THTGEK(1)PYR 143.89 0.00014071 39363000 14489.1 19649.1 18780.1 17015.8 22494 19270.7 23629 26887 20010 27557 FALSE TRUE FALSE 17712.15031 21946.89132 25727.6405 17945.33007 20254.41838 20279.68405 18580.47112 20292.92109 24025.82346 20687.54705 0.856174503 1.060874509 1.243629341 0.867446006 0.979063314 0.980284613 0.898147619 0.980924468 1.161366468 1 14.33647497 -7.723725644 24.98407083 1.080683475 0.9876359 0.108170842 0.111276482 346.2418766 229373.9412 0.076826493 0.029036079 1.89E-08 7.723725644 -0.093047574 THTGEK(ac)PYR ddPTM_HeLa_A486_30min_R1 2 THTGEKPYR 9 1 Q8N8E2-2;Q8N8E2;Q9HCG1;M0QZI7;P17017;A0A087X2B0;A0A0A0MP75;G5E9B8;E7EN86;F5H032;Q9UJW8;P52747;Q9NX65;Q9UJW8-3;Q9UJW8-2;O94892;A0A1W2PQ54;Q9UJW8-4;P52747-2;P52747-3;Q86UD4;Q86TJ5;Q7Z3I7;Q15937;Q9BSK1;Q9NX65-2;Q499Z4;Q9BSK1-2;Q9NX65-3;Q8WXB4;Q99612 Q8N8E2-2;Q99612 ZNF513;ZNF160;ZNF14;ZNF79;ZNF180;ZNF143;ZSCAN32;ZNF432;ZNF329;ZNF554;ZNF572;ZNF577;ZNF672;ZNF606;KLF6 Zinc finger protein 513;Zinc finger protein 160;Zinc finger protein 14;Zinc finger protein 180;Zinc finger protein 143;Zinc finger and SCAN domain-containing protein 32;Zinc finger protein 432;Zinc finger protein 329;Zinc finger protein 554;Zinc finger protein 572;Zinc finger protein 79;Zinc finger protein 577;Zinc finger protein 672;Zinc finger protein 606;Krueppel-like factor 6 0 1 ; THTGEK(1)PYR;THTGEK(1)PYR 115.78 0.00080926 22735000 19566.8 19386.4 16059.5 6960.2 23711 20204.5 20971.8 22552 17685.3 22190 FALSE TRUE FALSE 18195.26836 17850.15106 22278.16849 16203.69735 20736.94528 17711.87421 15724.43382 17417.40191 19218.27604 16633.47957 1.093894292 1.07314594 1.339357072 0.974161617 1.246699177 1.064832776 0.945348432 1.047129185 1.15539722 1 14.02180238 -6.505035 24.39841156 1.035781063 1.143998553 0.199032734 0.104394748 894.8107657 1223511.441 0.036138807 0.031216867 3.13E-07 6.505035 0.108217491 THTRVS(ph)VQR ddPTM_HeLa_A485_30min_R1 8 THTRVSVQR 9 1 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 THTRVS(1)VQR;THT(0.005)RVS(0.995)VQR;THTRVS(1)VQR;T(0.007)HT(0.019)RVS(0.974)VQR;THTRVS(1)VQR;THT(0.002)RVS(0.998)VQR;THT(0.004)RVS(0.996)VQR;T(0.001)HT(0.001)RVS(0.999)VQR ;;;;;;; 119.74 0.00023036 15218530000 1715619 2237639 1869272 1753784 2666092 2026818 3026774 3195416 1672969 2652240 TRUE FALSE FALSE 2097252.528 2499311.416 2560793.5 1849588.779 2400646.519 2132939.056 2380079.008 2411735.216 2008718.533 1991085.379 1.053321244 1.255250751 1.286129428 0.928934941 1.205697428 1.071244397 1.195367629 1.211266599 1.008856051 1 20.92512366 -7.778030871 24.09188698 1.004427661 1.152142051 0.249922869 0.101482501 250.7869198 364142.0685 0.095054151 0.024862023 1.67E-08 7.778030871 0.14771439 THTRVS(ph)VQR ddPTM_HeLa_A486_30min_R1 8 THTRVSVQR 9 1 H0YEN5;P15880;E9PQD7 H0YEN5 RPS2 40S ribosomal protein S2 1 0 THT(0.002)RVS(0.998)VQR;THTRVS(1)VQR;THTRVS(1)VQR;THT(0.001)RVS(0.999)VQR;THTRVS(1)VQR;THTRVS(1)VQR;T(0.002)HT(0.002)RVS(0.997)VQR;T(0.003)HT(0.015)RVS(0.982)VQR ;;;;;;; 124.12 0.00015026 13022729000 2867231 2564174 2105606 1096219 3082339 2432218 3065066 3137522 2075076 3166363 TRUE FALSE FALSE 2666252.913 2360979.514 2920953.033 2552053.232 2695723.301 2132155.672 2298154.068 2423176.732 2254945.258 2373485.095 1.123349339 0.994731131 1.230659944 1.075234573 1.135765843 0.898322756 0.968261428 1.020936149 0.950056633 1 21.17857556 -6.250014667 24.98305523 0.968870529 1.109991568 0.572589748 0.062376132 549.6698444 1201993.679 0.020270084 0.020098087 5.62E-07 6.250014667 0.14112104 THTTALAGRS(ph)PS(ph)PASGR ddPTM_HeLa_A485_30min_R1 13 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 THTTALAGRS(0.999)PS(0.999)PAS(0.001)GR;THTTALAGRS(1)PS(0.996)PAS(0.004)GR;THT(0.001)T(0.001)ALAGRS(0.998)PS(0.999)PAS(0.001)GR;THTTALAGRS(0.997)PS(0.924)PAS(0.078)GR;THTTALAGRS(1)PS(0.999)PAS(0.001)GR;THTTALAGRS(1)PS(1)PASGR;THT(0.004)T(0.019)ALAGRS(0.956)PS(0.913)PAS(0.108)GR;THTTALAGRS(1)PS(0.977)PAS(0.023)GR;T(0.001)HT(0.001)T(0.001)ALAGRS(0.998)PS(0.999)PAS(0.001)GR;THT(0.001)TALAGRS(0.996)PS(0.681)PAS(0.322)GR;THTTALAGRS(0.997)PS(0.979)PAS(0.024)GR;THTTALAGRS(0.999)PS(1)PASGR;T(0.036)HT(0.041)T(0.044)ALAGRS(0.885)PS(0.992)PAS(0.001)GR ;;;;;;;;;;;; 131.64 1.27E-05 34702640000 3843668 6915207 7447956 2678906 10885002 6638171 8130317 10330560 6779841 5549428 TRUE FALSE FALSE 4698678.686 7723880.304 10203264.86 2825247.851 9801252.981 6985735.369 6393208.354 7796973.962 8140492.9 4166057.729 1.127847714 1.854002226 2.449141496 0.678158594 2.352644543 1.676821548 1.534594278 1.871547268 1.954003864 1 21.9902514 -9.482573924 11.05328841 1.000000151 1.732739195 0.157705061 0.500086742 0 0 0.458221717 0.111135091 3.29E-10 9.482573924 0.732739044 THTTALAGRS(ph)PS(ph)PASGR ddPTM_HeLa_A486_30min_R1 10 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 THTTALAGRS(0.999)PS(0.998)PAS(0.003)GR;THTTALAGRS(0.999)PS(0.999)PAS(0.001)GR;THTTALAGRS(1)PS(0.999)PAS(0.001)GR;THTTALAGRS(1)PS(0.999)PAS(0.002)GR;THTTALAGRS(0.997)PS(0.876)PAS(0.128)GR;THTTALAGRS(1)PS(0.993)PAS(0.007)GR;THTTALAGRS(0.999)PS(0.983)PAS(0.018)GR;THTTALAGRS(1)PS(1)PASGR;THTTALAGRS(0.997)PS(0.973)PAS(0.029)GR;T(0.042)HT(0.048)T(0.05)ALAGRS(0.868)PS(0.99)PAS(0.002)GR ;;;;;;;;; 145.02 1.96E-07 44338560000 8981498 9530036 10600790 616452 15902700 8284769 10609750 11544430 9576355 4287571 TRUE FALSE FALSE 8351941.371 8774841.24 14705699.79 1435131.41 13908035.08 7262678.434 7955078.332 8916015.302 10406441.16 3213935.314 2.598665049 2.730248241 4.575605403 0.446534006 4.327415993 2.2597463 2.475183087 2.774173849 3.237912448 1 21.61590946 -10.42149676 2.873033916 0.960419867 2.819569422 0.204579074 1.079556087 28298856.81 32641592.78 9139097.186 0.258534929 3.79E-11 10.42149676 1.859149555 THTTALAGRS(ph)PS(ph)PASGRR ddPTM_HeLa_A485_30min_R1 7 THTTALAGRSPSPASGRR 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 THTTALAGRS(1)PS(0.956)PAS(0.044)GRR;T(0.003)HT(0.002)T(0.003)ALAGRS(0.969)PS(0.929)PAS(0.093)GRR;THTTALAGRS(1)PS(0.905)PAS(0.095)GRR;THTTALAGRS(1)PS(0.989)PAS(0.011)GRR;THTTALAGRS(0.998)PS(0.935)PAS(0.066)GRR;THTTALAGRS(1)PS(0.987)PAS(0.013)GRR;THTTALAGRS(0.999)PS(0.912)PAS(0.089)GRR ;;;;;; 131.59 4.86E-06 8088030000 512743 1160450 967157 327138 1517265 1146660 1195120 1799160 918428 648925 TRUE FALSE FALSE 626800.9114 1296154.533 1324948.621 345008.7206 1366200.769 1206697.345 939772.8488 1357913.189 1102748.075 487159.9401 1.286642968 2.660634478 2.719740504 0.70820421 2.804419364 2.47700446 1.929084827 2.787407332 2.263626346 1 18.89403598 THTTALAGRS(ph)PS(ph)PASGRR ddPTM_HeLa_A486_30min_R1 4 THTTALAGRSPSPASGRR 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 THTTALAGRS(0.996)PS(0.604)PAS(0.4)GRR;THTTALAGRS(0.999)PS(0.943)PAS(0.058)GRR;THTTALAGRS(0.995)PS(0.618)PAS(0.386)GRR;THTTALAGRS(1)PS(0.935)PAS(0.065)GRR ;;; 105.92 9.03E-05 3220400000 272748 324491 348141 49665.6 509537 276417 278243 364039 259326 158366 TRUE FALSE FALSE 253629.7737 298777.1514 482950.5187 115624.0268 445626.1182 242315.4809 208623.6584 281155.2666 281804.5865 118710.1228 2.136547142 2.5168633 4.06831791 0.974003093 3.753901585 2.041236882 1.757420964 2.368418632 2.373888425 1 16.85708344 -10.06294383 0.23977614 8.07E-13 2.76353456 0.223059194 0.842424513 25.17892951 1.371388249 18.38906969 1.537272012 8.65E-11 10.06294383 2.76353456 THTTALAGRS(ph)PSPAS(ph)GRR ddPTM_HeLa_A485_30min_R1 1 THTTALAGRSPSPASGRR 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 THTTALAGRS(0.973)PS(0.313)PAS(0.714)GRR 58.373 0.017202 258640000 53170 119660 91518 37376 72465 218850 77112 235550 121870 36272 TRUE FALSE FALSE 64997.48307 133653.1961 125374.3166 39417.75624 65250.13016 230308.6476 60636.39125 177780.9932 146328.1911 27230.05794 2.38697557 4.908296428 4.604261837 1.447582533 2.396253813 8.457883128 2.226818297 6.52885108 5.373774506 1 14.73291243 -4.246869111 22.8053366 4.23415044 2.386971115 0.047156106 2.250060099 2486.425766 3891516.549 0.549142229 10.36206356 5.66E-05 4.246869111 -1.847179325 THTTALAGRS(ph)PSPASGR ddPTM_HeLa_A486_30min_R1 2 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.001)HT(0.002)T(0.002)ALAGRS(0.919)PS(0.076)PASGR;T(0.001)HT(0.001)T(0.001)ALAGRS(0.826)PS(0.112)PAS(0.059)GR ; 52.451 0.02059 71432000 40205 38062 38350 7002.7 63426 37864 48664 50021 33166 28104 TRUE FALSE FALSE 37386.83712 35045.8285 53200.14705 16302.6395 55470.51966 33192.72465 36487.75248 38632.31025 36040.85558 21066.57547 1.774699318 1.66357501 2.525334367 0.77386282 2.633105686 1.575610839 1.732021065 1.833820134 1.710807513 1 14.36266819 -10.00413195 0.493555832 0.731916268 1.8314632 0.200741366 0.48442428 30.3374811 4.641604311 12.15145071 0.223514282 9.91E-11 10.00413195 1.099546931 THVTHHPLSDHEATLR ddPTM_HeLa_A485_30min_R1 2 THVTHHPLSDHEATLR 16 0 A0A1W2PRU9;O19617;A0A140T921;A2AEA2;A0A140T9H5;A0A140T9U8;P10321-2;P10321 A0A1W2PRU9 HLA-C "HLA class I histocompatibility antigen, Cw-7 alpha chain" 0 0 ; ; 184.48 6.47E-18 67734000 29818 44606 34739 26514 30458 35472 32527 35942 36343 43743 FALSE FALSE TRUE 36450.91123 49822.28368 47590.40171 27962.39268 27425.49458 37329.25907 25577.34073 27127.16815 43636.70674 32838.67513 1.109999447 1.517183123 1.44921808 0.851507942 0.835158376 1.136746806 0.778878582 0.826073769 1.328820562 1 15.0031083 -5.259305001 24.99990767 0.952017314 1.374638525 0.484438844 0.185450778 149.7569234 1754087.993 0.050354997 0.081996626 5.50E-06 5.259305001 0.422621211 THVTHHPVSDHEATLR ddPTM_HeLa_A485_30min_R1 2 THVTHHPVSDHEATLR 16 0 A0A1W2PS56;A0A1W2PRX1;A0A1W2PNZ7;A0A1W2PR11;A0A140T9W2;Q5RIP0;Q5QT33;Q53YP1;A0A140T9U0;A0A140T962;A0A0G2JIF0;A0A140T9M0;A0A140T9J9;A0A0G2JH50;A2BF26;A0A140T9B3 A0A1W2PS56 HLA-Cw;HLA-C 0 0 ; ; 156.57 9.27E-09 125071000 36369 70076 55462 24746 43442 60518 45239 85927 48889 47898 FALSE FALSE TRUE 44459.15858 78270.77862 75979.70177 26097.81132 39116.76195 63686.6289 35573.31808 64853.26852 58700.57386 35957.9101 1.236422207 2.176733253 2.113017735 0.725787768 1.087848594 1.771143783 0.989304384 1.803588372 1.632480133 1 15.13402155 -5.2348783 24.92715154 1.320097563 1.875525286 0.271060323 0.413449063 1000.813821 939246.7208 0.113429838 0.196395989 5.82E-06 5.2348783 0.555427724 TIAFLLPMFR ddPTM_HeLa_A485_30min_R1 4 TIAFLLPMFR 10 0 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 0 ;;; ;;; 217.02 1.37E-19 116940000 140929 196330 187546 141454 241559 149439 234094 213784 119061 183783 FALSE FALSE TRUE 172278.1699 219289.0857 256927.0698 149181.2738 217508.5378 157263.395 184077.9045 161353.1388 142955.4506 137969.2804 1.248670497 1.589405156 1.862204899 1.081264419 1.576499763 1.139843555 1.334194859 1.169485978 1.036139713 1 17.07398755 -6.780671155 0.570060431 0.998793854 1.531627593 0.406604158 0.208143078 0.843135612 0.567790583 0.190602404 0.147013319 1.66E-07 6.780671155 0.532833738 TIAFLLPMFR ddPTM_HeLa_A486_30min_R1 4 TIAFLLPMFR 10 0 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 0 ;;; ;;; 230.59 2.25E-26 112122000 199030 172200 146083 69145 181631 154433 210697 188034 161669 193696 FALSE FALSE TRUE 185079.0248 158554.2449 202650.2498 160973.0544 158849.1463 135380.6266 157978.3821 145222.763 175682.5991 145193.2609 1.274708094 1.092022067 1.395727657 1.108681308 1.094053163 0.932416738 1.088055886 1.000203192 1.209991415 1 17.14761497 -5.486906067 10.52407125 1.054376768 1.240421643 0.455849289 0.097472518 0.675468958 195.1684317 0.026474801 0.038860757 3.26E-06 5.486906067 0.186044875 TIAHS(ph)PTSFTESSSK ddPTM_HeLa_A485_30min_R1 1 TIAHSPTSFTESSSK 15 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 T(0.004)IAHS(0.974)PT(0.019)S(0.002)FTESSSK 108.49 0.00019206 440010000 257730 338380 343870 270120 539590 304330 427870 639070 405610 552500 TRUE FALSE FALSE 315061.1493 377950.5975 471081.8226 284875.9716 485866.525 320264.2482 336452.0791 482337.0805 487012.2065 414771.918 0.759600965 0.911225136 1.135761131 0.6868256 1.17140651 0.772145447 0.811173719 1.162897148 1.174168707 1 18.66195869 -7.269855719 24.79010217 1.126399714 0.900837667 0.296205331 0.154416825 704.5762538 2075295.698 0.079696106 0.039290055 5.37E-08 7.269855719 -0.225562047 TIAIIAEGIPEALTR ddPTM_HeLa_A485_30min_R1 1 TIAIIAEGIPEALTR 15 0 P53396;P53396-3;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 136.27 2.15E-05 15262000 10553 10639 12174 11922 16150 9964 13917 12727 10944 17787 FALSE FALSE TRUE 12900.47844 11883.1385 16677.6692 12573.26867 14542.04929 10485.69963 10943.51926 9605.683295 13140.36042 13353.02825 0.966108826 0.889920869 1.248980298 0.941604289 1.089045049 0.785267539 0.819553367 0.719363662 0.984073438 1 13.70487934 -6.262516041 24.99866823 0.841480688 1.027082416 0.311335397 0.121214681 109.8223126 2549907.187 0.040516924 0.037735365 5.46E-07 6.262516041 0.185601728 TIANMFGSSEKETIELS(ph)PTGRPK ddPTM_HeLa_A486_30min_R1 1 TIANMFGSSEKETIELSPTGRPK 23 2 A0A087WSW7;F6XU50;Q9NRZ9-4;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5 A0A087WSW7 HELLS Lymphoid-specific helicase 1 0 T(0.01)IANMFGS(0.006)S(0.009)EKET(0.306)IELS(0.508)PT(0.161)GRPK 55.406 0.013364 84623000 10999 10802 9441.1 10858 14111 16222 24590 22941 10821 27246 TRUE FALSE FALSE 10228.0269 9946.01018 13096.94676 25277.97273 12341.0668 14220.69457 18437.32191 17717.8351 11758.97299 20423.42426 0.500798826 0.486990333 0.641270856 1.23769513 0.604260414 0.696293354 0.902753705 0.867525194 0.57575913 1 14.31793715 -5.006902981 23.82870123 0.830871511 0.51145336 0.372255521 0.18326991 184.8235184 638016.5583 0.048000843 0.094033285 9.84E-06 5.006902981 -0.319418152 TIAPALVS(ph)K ddPTM_HeLa_A485_30min_R1 1 TIAPALVSK 9 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 1 0 TIAPALVS(1)K 76.165 0.010792 47822000 213980 215410 166100 407590 274180 227390 362230 354080 191120 468930 TRUE FALSE FALSE 261579.1128 240600.3257 227547.302 429855.6096 246881.6765 239295.7888 284836.6014 267241.3248 229476.0309 352034.381 0.743049903 0.683456897 0.646378065 1.221061444 0.701299901 0.679751188 0.809115861 0.759134162 0.651856873 1 18.42535681 TIAPALVSK ddPTM_HeLa_A485_30min_R1 2 TIAPALVSK 9 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 160.69 1.19E-05 336270000 660940 839010 675360 760720 1043540 828130 1163400 1198590 710730 1060600 FALSE FALSE TRUE 807963.8228 937124.9211 925203.7681 802276.2074 939641.4935 871489.6063 914830.0859 904633.9232 853366.9918 796211.9389 1.014759743 1.176979238 1.162006902 1.0076164 1.18013992 1.094544761 1.148978106 1.136172266 1.071783718 1 19.60279298 -8.045166815 4.047797138 1.000100431 1.117523189 0.269699856 0.058288083 0.294160948 13.85375621 0.053351117 0.01401106 9.01E-09 8.045166815 0.117422758 TIAPALVSK ddPTM_HeLa_A486_30min_R1 4 TIAPALVSK 9 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;; ;;; 128.36 0.0063713 1022078000 1539849 1633328 1121674 659648.7 3190511 1534325 1756209 1728214 1290622 1501355 FALSE FALSE TRUE 1431913.537 1503897.141 1556016.212 1535695.51 2790327.36 1345035.581 1316786.933 1334737.399 1402494.154 1125405.936 1.272352927 1.336315273 1.382626626 1.364570296 2.479396342 1.195155933 1.170055081 1.186005295 1.246211797 1 20.10201405 -6.477333284 24.99992596 1.168428743 1.563192373 0.277419372 0.328979522 645.6953773 354422.7765 0.120932806 0.106648356 3.33E-07 6.477333284 0.39476363 TIAPALVSK(ac)K ddPTM_HeLa_A485_30min_R1 2 TIAPALVSKK 10 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; TIAPALVSK(1)K;TIAPALVSK(1)K 172.88 4.09E-06 133840000 248840 286950 228770 277920 356960 304540 407040 450090 242450 401290 FALSE TRUE FALSE 304193.5995 320506.3064 313401.5429 293102.0659 321419.809 320485.2435 320072.5788 339704.7218 291107.4911 301255.7882 1.009751883 1.063900907 1.040317083 0.972934222 1.066933223 1.06383099 1.062461175 1.127628863 0.966313354 1 18.20062944 TIAPALVSK(ac)K ddPTM_HeLa_A486_30min_R1 2 TIAPALVSKK 10 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; TIAPALVSK(1)K;TIAPALVSK(1)K 190.96 1.88E-09 137357000 216326 241421 152757 86996 264794 245607 267452 277022 206491 289390 FALSE TRUE FALSE 201162.6645 222289.9207 211908.6014 202531.0845 231581.0674 215306.5055 200532.6808 213950.1379 224389.8061 216924.8604 0.927337992 1.024732344 0.976875592 0.93364626 1.067563519 0.99253956 0.924433836 0.986286853 1.034412588 1 17.72683588 -4.23906955 23.28263511 0.990713038 0.927337818 0.185802964 0.04113777 4226.066179 4398338.275 0.010374225 0.457375916 5.77E-05 4.23906955 -0.06337522 TIAQDYGVLK ddPTM_HeLa_A485_30min_R1 2 TIAQDYGVLK 10 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 191.48 1.02E-09 161943000 302160 294230 271730 371370 436070 370680 490480 465300 269560 499430 FALSE FALSE TRUE 369374.4496 328637.639 372254.2346 391657.0027 392653.3397 390088.2316 385684.9411 351184.4454 323658.2194 374931.2923 0.985179037 0.876527635 0.992859871 1.044610068 1.047267453 1.040425912 1.028681652 0.93666347 0.86324675 1 18.51626671 -7.370952398 5.718586018 0.922240345 1.001686974 0.235001865 0.056348085 0.341775663 15.12444288 0.034558433 0.016160256 4.26E-08 7.370952398 0.079446629 TIAQDYGVLK ddPTM_HeLa_A486_30min_R1 1 TIAQDYGVLK 10 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 121.9 0.0024958 0 20054 33663 29426 15234 44123 29245 34955 37477 27523 25067 FALSE FALSE TRUE 18648.31816 30995.42128 40820.53526 35465.52188 38588.68191 25637.04924 26208.88928 28944.30522 29908.7158 18790.06004 0.99245655 1.649564781 2.172453689 1.887461871 2.053675285 1.364394216 1.39482733 1.540405148 1.59173072 1 14.19768206 -6.287760759 24.40511136 1.413081487 1.776462078 0.235487862 0.331392817 927.706355 860163.2992 0.121751824 0.107410784 5.16E-07 6.287760759 0.363380591 TIAS(ph)DS(ph)EEEAGK ddPTM_HeLa_A485_30min_R1 2 TIASDSEEEAGK 12 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 TIAS(1)DS(1)EEEAGK;TIAS(1)DS(1)EEEAGK ; 157.37 7.10E-08 1444930000 3670100 3082900 2112370 5739300 3593300 3129700 4971400 3759500 2832000 6866800 TRUE FALSE FALSE 4486501.083 3443418.337 2893823.566 6052823.426 3235538.435 3293566.253 3909219.777 2837476.73 3400356.423 5155033.134 0.870314694 0.667972106 0.561358868 1.174158006 0.627646487 0.638903023 0.758330679 0.550428418 0.659618733 1 22.29755027 TIAS(ph)DS(ph)EEEAGK ddPTM_HeLa_A486_30min_R1 1 TIASDSEEEAGK 12 0 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 TIAS(1)DS(1)EEEAGK 238.03 2.22E-27 592360000 1382600 1279900 598970 702300 955900 1502400 1758500 1478800 1099400 2248700 TRUE FALSE FALSE 1285686.88 1178476.063 830907.225 1634989.892 836002.1086 1317049.163 1318504.7 1142109.522 1194696.877 1685610.883 0.762742394 0.699138855 0.492941303 0.969968756 0.495963877 0.781348279 0.782211787 0.67756416 0.708761962 1 20.6848401 -13.99999999 0.356984139 4.550164127 0.69768392 0.305271455 0.132194718 562.7942291 4.537478421 1533.039546 0.093587536 1.00E-14 13.99999999 -3.852480207 TIAS(ph)DS(ph)EEEAGKELSDK ddPTM_HeLa_A485_30min_R1 2 TIASDSEEEAGKELSDK 17 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 T(0.003)IAS(0.997)DS(1)EEEAGKELSDK;TIAS(1)DS(1)EEEAGKELSDK ; 183.25 1.38E-17 1040650000 1502460 828830 600970 3545400 1491840 1143210 2370010 1521200 927030 4448200 TRUE FALSE FALSE 1836677.044 925754.4586 823293.8114 3739076.225 1343307.171 1203066.708 1863638.002 1148123.315 1113076.418 3339345.603 0.550011069 0.27722631 0.246543458 1.11970328 0.402266591 0.3602702 0.558084794 0.343816859 0.333321719 1 21.67113398 -10.22086489 4.637012078 1.000111889 0.467107186 0.309028598 0.239677335 666110777.5 215.4569947 924202.4491 0.058883616 6.01E-11 10.22086489 -0.533004703 TIAS(ph)DS(ph)EEEAGKELSDK ddPTM_HeLa_A486_30min_R1 3 TIASDSEEEAGKELSDK 17 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 TIAS(1)DS(1)EEEAGKELSDK;TIAS(1)DS(1)EEEAGKELSDK;T(0.024)IAS(0.978)DS(0.989)EEEAGKELS(0.009)DK ;; 196.11 8.28E-19 1193760000 3825820 3605900 1314660 3285050 2793130 5628010 7702340 6269810 2866690 8723370 TRUE FALSE FALSE 3557649.775 3320155.352 1823731.56 7647762.417 2442789.59 4933683.348 5775133.065 4842311.132 3115176.997 6538981.372 0.544067886 0.507748098 0.278901477 1.169564796 0.373573413 0.754503349 0.883185428 0.740529886 0.476400959 1 22.64063448 -5.974335404 0.084151277 1.291063655 5.05E-19 0.182098035 0.245425147 71.5290505 2.04868231 11.31576513 19.60038487 1.06E-06 5.974335404 -1.291063655 TIAS(ph)DS(ph)EEEAGKELSDKK ddPTM_HeLa_A485_30min_R1 2 TIASDSEEEAGKELSDKK 18 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 TIAS(1)DS(1)EEEAGKELSDKK;T(0.001)IAS(0.999)DS(1)EEEAGKELSDKK ; 111.58 6.33E-05 679730000 592620 310720 163452 1326890 468450 453220 1026890 795450 317950 1763920 TRUE FALSE FALSE 724446.2745 347056.0011 223919.6966 1399374.641 421809.4732 476949.8984 807486.5626 600364.6403 381759.6486 1324207.207 0.547079242 0.262085872 0.169097174 1.056764103 0.318537364 0.360177694 0.609788679 0.45337666 0.288292985 1 20.33669746 -10.03922148 4.440781738 1.000028585 0.453689026 0.322305745 0.238507644 637743084.4 1220176592 272472.2612 0.059162501 9.14E-11 10.03922148 -0.546339559 TIAS(ph)DS(ph)EEEAGKELSDKK ddPTM_HeLa_A486_30min_R1 3 TIASDSEEEAGKELSDKK 18 2 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 TIAS(1)DS(1)EEEAGKELSDKK;TIAS(1)DS(1)EEEAGKELSDKK;T(0.056)IAS(0.945)DS(0.994)EEEAGKELS(0.005)DKK ;; 128.07 6.59E-06 1117430000 778420 631480 194042 607630 478410 947370 1331160 1163140 499810 1881850 TRUE FALSE FALSE 723856.7778 581439.225 269180.259 1414593.348 418403.3568 830493.1216 998089.6884 898318.4132 543133.9332 1410622.511 0.513147048 0.412186266 0.190823737 1.002814953 0.296609017 0.588742286 0.707552645 0.636824101 0.385031381 1 20.42790054 -14 0.176333968 2.827310873 0.431701475 0.294750643 0.218462065 170.7098324 1.631346766 109.7820165 0.706873005 1.00E-14 14 -2.395609399 TIAS(ph)DS(ph)EEEAGKELSDKKNEEK ddPTM_HeLa_A485_30min_R1 3 TIASDSEEEAGKELSDKKNEEK 22 3 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 0 T(0.139)IAS(0.879)DS(0.978)EEEAGKELS(0.005)DKKNEEK;T(0.005)IAS(0.995)DS(1)EEEAGKELSDKKNEEK;T(0.04)IAS(0.941)DS(0.97)EEEAGKELS(0.05)DKKNEEK ;; 101.59 0.00028316 1007880000 519198 287150 136543 1390300 442310 539777 1303810 1073110 285769 1924850 TRUE FALSE FALSE 634691.8039 320729.6946 187055.9377 1466248.569 398272.0634 568038.8891 1025240.342 809928.0899 343120.2171 1445020.319 0.439226906 0.221955145 0.129448656 1.014690623 0.275616929 0.39310097 0.709498911 0.560495987 0.237450098 1 20.46265835 -14 0.206246772 3.503126393 0.369576958 0.294765919 0.253530769 190.5351068 1.894879515 198.0088996 0.573490596 1.00E-14 14 -3.133549435 TICTFDSSGFESMS(ph)PIKETVSSR ddPTM_HeLa_A485_30min_R1 4 TICTFDSSGFESMSPIKETVSSR 23 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 TICTFDSSGFESMS(1)PIKETVSSR;TICTFDSSGFESMS(1)PIKETVSSR;TICTFDSSGFES(0.024)MS(0.976)PIKETVSSR;TICTFDSSGFES(0.026)MS(0.974)PIKETVSSR ;;; 279.57 3.06E-75 1767920000 486287 466330 362557 613020 633540 538448 770670 793210 433243 881150 TRUE FALSE FALSE 594459.8655 520863.237 496681.9216 646507.7304 570462.5331 566640.3047 606010.0587 598674.0038 520190.8962 661495.5214 0.898660454 0.787402515 0.750846991 0.977342566 0.862383062 0.8566049 0.916121182 0.905031076 0.78638612 1 19.33537186 -14 0.204576939 1.618808025 0.841039849 0.267078846 0.066688796 201.1926803 1.998387912 51.32152951 0.155371371 1.00E-14 14 -0.777768176 TICTFDSSGFESMS(ph)PIKETVSSR ddPTM_HeLa_A486_30min_R1 3 TICTFDSSGFESMSPIKETVSSR 23 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 TICTFDSSGFES(0.001)MS(0.999)PIKETVSSR;TICTFDSSGFES(0.015)MS(0.984)PIKETVSSR;TICTFDSSGFES(0.154)MS(0.846)PIKETVSSR ;; 256.85 2.17E-61 991280000 386770 370461 209524 202685 344579 368373 515858 430637 281933 505815 TRUE FALSE FALSE 359659.4203 341104.3212 290657.304 471860.9231 301358.6887 322926.8846 386784.8722 332590.3558 306371.1794 379155.6317 0.948579924 0.899641975 0.766591024 1.244504588 0.794815278 0.851700087 1.020121659 0.877186907 0.808035418 1 18.53243063 TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK ddPTM_HeLa_A485_30min_R1 5 TIDLGAAAHYTGDKASPDQNASTHTPQSSVK 31 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 0 TIDLGAAAHYT(0.011)GDKAS(0.989)PDQNASTHTPQSSVK;TIDLGAAAHYTGDKAS(1)PDQNASTHTPQSSVK;TIDLGAAAHYTGDKAS(0.998)PDQNAS(0.001)T(0.001)HTPQSSVK;TIDLGAAAHYTGDKAS(1)PDQNASTHTPQSSVK;TIDLGAAAHYTGDKAS(1)PDQNASTHTPQSSVK ;;;; 307.81 1.34E-94 10077660000 2575628 2666147 1841456 1932755 4077625 2746324 4813209 4712130 2659661 4278720 TRUE FALSE FALSE 3148567.563 2977929.699 2522687.204 2038336.512 3671642.338 2890117.278 3784827.577 3556472.729 3193430.567 3212113.848 0.980216677 0.927093447 0.785366685 0.634577916 1.143061084 0.899755555 1.178298079 1.107206313 0.994183493 1 21.6150916 -5.781395775 24.99999831 1.057638687 0.835301644 0.478281913 0.113489323 219.2543383 274665.4657 0.036486844 0.04142489 1.65E-06 5.781395775 -0.222337042 TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK ddPTM_HeLa_A486_30min_R1 2 TIDLGAAAHYTGDKASPDQNASTHTPQSSVK 31 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 0 TIDLGAAAHYTGDKAS(1)PDQNASTHTPQSSVK;TIDLGAAAHYTGDKAS(0.999)PDQNASTHTPQSSVK ; 309.56 2.98E-109 2591000000 1278670 1096960 545410 87745 1182910 1083580 1496960 1325230 1088700 877580 TRUE FALSE FALSE 1189041.836 1010032.895 756607.3586 204274.7944 1034538.398 949898.9166 1122404.775 1023504.059 1183069.393 657828.2559 1.807526243 1.535405154 1.15015941 0.310529067 1.572657283 1.44399227 1.706227674 1.555883393 1.798447212 1 19.32735145 TIEAAEALLHMES(ph)PTCLR ddPTM_HeLa_A485_30min_R1 3 TIEAAEALLHMESPTCLR 18 0 Q15723-2;Q15723-3;Q15723-1;Q15723;Q15723-4;D6RHI1 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 TIEAAEALLHMES(0.948)PT(0.052)CLR;TIEAAEALLHMES(0.964)PT(0.036)CLR;TIEAAEALLHMES(0.975)PT(0.025)CLR ;; 132.48 5.01E-06 203711000 120345 172480 196749 138309 220079 150417 176473 170534 162566 189667 TRUE FALSE FALSE 147115.3301 192650.0356 269534.6425 145864.4705 198167.162 158292.6015 138768.1019 128710.2691 195191.5051 142386.5075 1.033211171 1.353007662 1.892978817 1.024426212 1.391755199 1.111710683 0.974587441 0.9039499 1.370856751 1 17.11945292 -6.347004438 4.079166391 1.05286366 1.353846218 0.217929428 0.252336787 0.35797294 10.99309106 0.093035435 0.081907827 4.50E-07 6.347004438 0.300982558 TIEAAEALLHMES(ph)PTCLR ddPTM_HeLa_A486_30min_R1 1 TIEAAEALLHMESPTCLR 18 0 Q15723-2;Q15723-3;Q15723-1;Q15723;Q15723-4;D6RHI1 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 TIEAAEALLHMES(0.994)PT(0.006)CLR 122.18 1.43E-05 77897000 90278 119070 103960 39617 138310 117660 116790 126820 110340 111170 TRUE FALSE FALSE 83949.9784 109634.4596 144216.0961 92230.37813 120961.8701 103144.3055 87567.90672 97945.85446 119904.36 83332.3084 1.007412131 1.315629696 1.730614439 1.10677815 1.451560294 1.237746889 1.050827805 1.17536471 1.438870017 1 16.34658832 -6.515106733 24.4423921 1.175651922 1.33391569 0.106984195 0.211059013 655.6779218 2062074.188 0.078347322 0.063533617 3.05E-07 6.515106733 0.158263768 TIEDAIAVLS(ph)VAEEAADRHPER ddPTM_HeLa_A486_30min_R1 1 TIEDAIAVLSVAEEAADRHPER 22 1 Q96CT7 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 1 0 TIEDAIAVLS(1)VAEEAADRHPER 46.307 0.030138 2841500 2872.6 4926.3 5465.6 1507 5035.8 5914 7351.2 4903.2 2378.6 2484.6 TRUE FALSE FALSE 2671.245574 4535.922047 7582.026694 3508.37216 4404.163007 5184.390809 5511.852007 3786.848396 2584.778963 1862.439988 1.434272026 2.435472861 4.071017989 1.883750447 2.364727473 2.783655228 2.959478986 2.033272707 1.387845504 1 10.86297822 -7.701624935 2.39351571 1.054676867 2.588441425 0.40695748 0.658057614 0.290325678 3.084508988 0.61141698 0.17959189 1.99E-08 7.701624935 1.533764557 TIEDAIAVLSVAEEAADRHPER ddPTM_HeLa_A485_30min_R1 1 TIEDAIAVLSVAEEAADRHPER 22 1 Q96CT7 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 0 0 97.457 0.0030436 7794200 8096.3 8025.2 8935.2 6468.1 9441.2 9063.1 9482.4 9462.9 6529.3 8238.1 FALSE FALSE TRUE 9897.294003 8963.67733 12240.7023 6821.435925 8501.200978 9537.629902 7456.407776 7142.108938 7839.67062 6184.493281 1.600340328 1.449379427 1.979257111 1.102990272 1.374599436 1.542184536 1.205661877 1.15484141 1.267633461 1 12.59443968 -6.222284782 0.276420892 0.976657244 1.788307879 0.449522603 0.203478841 2.792314186 0.449152966 0.327320335 0.774341314 5.99E-07 6.222284782 0.811650636 TIEDAIAVLSVAEEAADRHPER ddPTM_HeLa_A486_30min_R1 1 TIEDAIAVLSVAEEAADRHPER 22 1 Q96CT7 Q96CT7 CCDC124 Coiled-coil domain-containing protein 124 0 0 107.45 0.00058461 6397400 8045.2 9737.3 5862.2 3148.5 13501 9685 9306 10452 9112.1 9033.9 FALSE FALSE TRUE 7481.273025 8965.680885 8132.200835 7329.867116 11807.57869 8490.16317 6977.540371 8072.307766 9901.944165 6771.752639 1.104776477 1.323982337 1.200900456 1.082418025 1.743651801 1.253761563 1.030389139 1.192055912 1.462242449 1 12.72531356 -10.6721093 7.432580408 0.999031372 1.264990991 0.138804446 0.1987705 0.003242524 0.000143045 0.195600642 0.047280343 2.13E-11 10.6721093 0.26595962 TIET(ph)SPSLSR ddPTM_HeLa_A485_30min_R1 3 TIETSPSLSR 10 0 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 1 0 TIET(0.496)S(0.496)PS(0.008)LSR;TIET(0.592)S(0.404)PS(0.004)LSR;TIET(0.823)S(0.165)PS(0.012)LSR ;; 193.21 1.75E-09 2214720000 2103620 2665830 2677460 2339230 3354570 2487570 3217750 3658040 2349860 3156900 TRUE FALSE FALSE 2571563.012 2977575.629 3667963.872 2467016.212 3020577.232 2617815.319 2530251.426 2760899.954 2821455.348 2369942.928 1.085073814 1.25639128 1.547701351 1.040960178 1.274535853 1.104590025 1.067642345 1.164964743 1.190516157 1 21.17642089 TIET(ph)SPSLSR ddPTM_HeLa_A486_30min_R1 3 TIETSPSLSR 10 0 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 1 0 TIET(0.53)S(0.465)PS(0.006)LSR;TIET(0.643)S(0.318)PS(0.039)LSR;TIET(0.5)S(0.5)PSLSR ;; 163.46 2.44E-06 3143070000 3120530 3504000 2794430 1068540 3868060 3274740 3850940 4051600 2767140 3352440 TRUE FALSE FALSE 2901796.961 3226330.279 3876508.133 2487615.121 3382891.847 2870735.874 2887394.081 3129139.126 3006997.923 2512967.203 1.154729341 1.283872816 1.54260196 0.989911495 1.346174292 1.142369017 1.148997917 1.245196961 1.196592586 1 21.26096041 -14 0.130283166 0.212302409 1.328476122 0.217091621 0.136986402 220.8363883 1.811065258 45.19359767 1.021611941 1.00E-14 14 1.116173713 TIETS(ph)PSLSR ddPTM_HeLa_A485_30min_R1 2 TIETSPSLSR 10 0 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 1 0 TIET(0.031)S(0.967)PS(0.002)LSR;TIET(0.296)S(0.691)PS(0.013)LSR ; 226.33 3.36E-17 2120400000 2842130 3843600 3759800 3107300 5012100 3268300 4324200 4829900 3480600 4157700 TRUE FALSE FALSE 3474352.013 4293075.585 5150706.478 3277043.931 4513077.725 3439423.134 3400299.345 3645359.452 4179124.494 3121261.907 1.113124152 1.375429462 1.650200026 1.049909949 1.44591446 1.101933525 1.089398918 1.167912069 1.338921442 1 21.57369799 -6.27535485 24.30450466 1.146988045 1.33218187 0.220894157 0.175451673 905.2701042 1581123.017 0.061270693 0.054329331 5.30E-07 6.27535485 0.185193825 TIETS(ph)PSLSR ddPTM_HeLa_A486_30min_R1 1 TIETSPSLSR 10 0 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 1 0 TIET(0.263)S(0.726)PS(0.011)LSR 128.08 9.56E-05 1458700000 2225000 2596000 2082600 797250 2647400 2725200 3206000 3421900 2099900 2564700 TRUE FALSE FALSE 2069038.99 2390283.506 2889038.494 1856038.291 2315338.406 2388992.532 2403824.89 2642808.07 2281921.023 1922482.427 1.076232979 1.243331784 1.502764579 0.965438365 1.204348281 1.24266027 1.250375482 1.374685164 1.186965868 1 20.87453898 -8.025104096 23.17483762 0.99999999 1.235940014 0.202302678 0.13799611 1473.285067 1360063.243 0.132555573 0.034225702 9.44E-09 8.025104096 0.235940023 TIFAYFTGSK ddPTM_HeLa_A485_30min_R1 2 TIFAYFTGSK 10 0 I3L0K2;I3L3M7;Q9BRA2 I3L0K2 TXNDC17 Thioredoxin domain-containing protein 17 0 0 ; ; 190.02 1.84E-09 71046000 161118 188024 162313 170098 234210 185742 250590 270450 145510 237830 FALSE FALSE TRUE 196958.1432 210011.7712 222359.3331 179390.023 210891.23 195467.1639 197049.3994 204121.7135 174712.5223 178543.3579 1.103139011 1.17625082 1.245408038 1.00474207 1.181176564 1.094788214 1.103650125 1.143261311 0.978543948 1 17.44591494 -7.761542635 24.99994522 0.989271908 1.132108818 0.468031246 0.060672648 2.326457568 561990.3676 0.047109592 0.015110597 1.73E-08 7.761542635 0.14283691 TIFAYFTGSK ddPTM_HeLa_A486_30min_R1 2 TIFAYFTGSK 10 0 I3L0K2;I3L3M7;Q9BRA2 I3L0K2 TXNDC17 Thioredoxin domain-containing protein 17 0 0 ; ; 200.56 5.69E-14 90679000 230780 219830 153336 83348 237340 219480 268080 247780 194188 268560 FALSE FALSE TRUE 214603.5137 202409.8702 212711.8057 194038.3562 207570.6041 192402.7891 201003.5485 191365.903 211020.3722 201310.828 1.066030655 1.005459429 1.056633703 0.963874413 1.031095079 0.955749828 0.998473607 0.950599155 1.048231604 1 17.61906525 -4.526301735 0.800217983 0.989974677 1.07783317 0.26332899 0.034349499 2.351913575 1.510427154 0.012749903 0.171882552 2.98E-05 4.526301735 0.087858493 TIFIISMYK ddPTM_HeLa_A485_30min_R1 2 TIFIISMYK 9 0 Q14116-2;Q14116 Q14116-2 IL18 Interleukin-18 0 0 ; ; 168.27 5.55E-06 48774000 122633 109776 98569 118365 169828 117306 168227 169530 80494 161871 FALSE FALSE TRUE 149912.2878 122613.3483 135033.7749 124830.9802 152919.328 123447.9608 132283.9272 127952.5017 96648.40747 121519.5387 1.233647604 1.0090011 1.111210397 1.027250281 1.258392927 1.015869234 1.088581545 1.052937684 0.795332244 1 16.89082877 -7.603781533 6.269454122 0.899970624 1.099977511 0.442089143 0.092168927 0.184082623 11.2132476 0.060047149 0.022038027 2.49E-08 7.603781533 0.200006888 TIFIISMYK ddPTM_HeLa_A486_30min_R1 2 TIFIISMYK 9 0 Q14116-2;Q14116 Q14116-2 IL18 Interleukin-18 0 0 ; ; 182.69 5.73E-08 33367000 74485 82085 66481 42147 98445 90794 117267 105141 69358 104230 FALSE FALSE TRUE 69263.98614 75580.28565 92224.22362 98120.34599 86097.11014 79592.75941 87925.55628 81202.68951 75370.00728 78130.12958 0.886520815 0.967364141 1.180392559 1.255857971 1.101970656 1.018720433 1.12537323 1.039326185 0.964672754 1 16.25359139 -7.555857143 4.777424539 0.985063144 1.0822319 0.122891479 0.099126282 0.445316895 24.70108467 0.077036538 0.028379555 2.78E-08 7.555857143 0.097168757 TIFPLFMKS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TIFPLFMKSPR 11 1 A0A087WUB9;Q8WYA6-3;Q8WYA6-2;Q8WYA6-4;Q8WYA6 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 1 0 TIFPLFMKS(1)PR;TIFPLFMKS(1)PR ; 119.96 8.90E-05 123395000 151714 218145 172715 178783 356330 271470 387630 538380 197023 283440 TRUE FALSE FALSE 185462.2559 243655.1601 236609.4658 188549.4626 320852.534 285683.7494 304809.6839 406341.4609 236563.7089 212783.6243 0.87160023 1.145084171 1.111972157 0.886108897 1.507881704 1.34260214 1.432486569 1.9096463 1.111757118 1 17.6990276 -5.766357855 24.9999322 1.429892861 1.021525176 0.359414096 0.243752531 123.0660059 625526.8264 0.072210186 0.084461488 1.71E-06 5.766357855 -0.408367685 TIFPLFMKS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TIFPLFMKSPR 11 1 A0A087WUB9;Q8WYA6-3;Q8WYA6-2;Q8WYA6-4;Q8WYA6 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 1 0 TIFPLFMKS(1)PR;TIFPLFMKS(1)PR ; 132.31 1.72E-05 112734000 228665 200504 176144 131844 343940 250215 349290 362580 174244 273800 TRUE FALSE FALSE 212636.7643 184615.3328 244351.6741 306939.495 300799.8381 219346.0173 261893.9476 280028.4491 189347.6102 205238.6979 1.036046158 0.899515222 1.190573107 1.495524471 1.465609757 1.068736157 1.27604565 1.36440375 0.922572654 1 17.64694325 -4.869126773 5.479426761 1.254486248 0.970491441 0.228864916 0.18299479 0.253894996 11.16010108 0.048278705 0.104443233 1.35E-05 4.869126773 -0.283994807 TIGGGDDS(ph)FNTFFSETGAGK ddPTM_HeLa_A485_30min_R1 7 TIGGGDDSFNTFFSETGAGK 20 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;F8W0F6;F8VXZ7;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain 1 0 TIGGGDDS(0.997)FNT(0.003)FFSETGAGK;TIGGGDDS(0.992)FNT(0.008)FFSETGAGK;TIGGGDDS(0.98)FNT(0.02)FFSETGAGK;TIGGGDDS(0.998)FNT(0.002)FFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK ;;;;;; 327.27 6.26E-114 6054149000 3165231 2923350 2318972 3792908 4146592 3136904 4861589 4360973 2873007 5207080 TRUE FALSE FALSE 3869325.716 3265210.353 3176856.243 4000104.96 3733742.741 3301147.443 3822870.795 3291437.534 3449593.152 3909050.785 0.989837669 0.835294943 0.812692497 1.023293167 0.955153296 0.844488246 0.97795373 0.842004291 0.88246312 1 21.8983869 -5.22941958 24.99564656 0.924819521 0.874877059 0.093363116 0.072696426 1764.873884 1377713.475 0.019814321 0.034314577 5.90E-06 5.22941958 -0.049942463 TIGGGDDS(ph)FNTFFSETGAGK ddPTM_HeLa_A486_30min_R1 6 TIGGGDDSFNTFFSETGAGK 20 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;F8W0F6;F8VXZ7;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain 1 0 TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(0.996)FNT(0.004)FFSETGAGK;T(0.025)IGGGDDS(0.974)FNT(0.001)FFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK ;;;;; 325.19 9.04E-103 5030450000 4018689 4318044 2703072 2049830 4333428 4518414 5789396 5636288 3520805 5312140 TRUE FALSE FALSE 3736999.654 3975866.467 3749773.869 4772107.833 3789889.053 3960978.021 4340827.887 4353028.262 3825991.212 3981945.568 0.938485871 0.998473334 0.941693904 1.19843623 0.951768172 0.994734346 1.090127379 1.093191302 0.960834634 1 21.92504207 TIGGGDDS(ph)FTTFFCETGAGK ddPTM_HeLa_A485_30min_R1 1 TIGGGDDSFTTFFCETGAGK 20 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 1 0 T(0.129)IGGGDDS(0.742)FT(0.129)TFFCETGAGK 152.94 7.36E-10 31216000 31916 29112 28969 40554 43610 25913 40235 31359 31448 45418 TRUE FALSE FALSE 39015.60409 32516.39516 39685.8386 42769.36233 39268.03528 27269.76461 31638.46356 23668.15608 37759.32514 34096.12846 1.144282529 0.95366825 1.163939732 1.254375915 1.151686043 0.799790646 0.927919532 0.694159635 1.107437321 1 15.05732031 -6.251251674 24.66229682 0.888125035 1.131991198 0.450894906 0.12488387 514.2296497 1244842.633 0.041001788 0.040537029 5.61E-07 6.251251674 0.243866163 TIGGGDDS(ph)FTTFFCETGAGK ddPTM_HeLa_A486_30min_R1 1 TIGGGDDSFTTFFCETGAGK 20 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 1 0 T(0.066)IGGGDDS(0.42)FT(0.42)T(0.093)FFCETGAGK 83.253 0.0010785 40527000 16416 19401 14193 8786.1 17806 20213 20648 26231 14102 23015 TRUE FALSE FALSE 15265.32317 17863.5941 19688.9097 20454.48482 15572.60545 17719.32557 15481.65201 20258.77392 15324.37271 17251.8942 0.884849107 1.035456971 1.141260749 1.185637043 0.902660616 1.027094496 0.897388532 1.174292729 0.888271893 1 14.07446715 -5.778035304 24.99993514 0.988395062 1.065595014 0.115547417 0.107498985 582.3798613 877287.5202 0.033547576 0.038144388 1.67E-06 5.778035304 0.077199952 TIGGGDDSFNTFFSETGAGK ddPTM_HeLa_A486_30min_R1 1 TIGGGDDSFNTFFSETGAGK 20 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;F8VVB9;F8VQQ4;Q6PEY2;F8VRZ4;F8VS66;F8VWV9;F8VX09;F8VRK0;F8W0F6;F8VXZ7;P68363;P68363-2 F5H5D3;P68363 TUBA1C;TUBA1A;TUBA1B;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain 0 0 138.19 3.13E-09 0 27196 30270 18788 13309 41041 27962 34340 36585 24465 30950 FALSE FALSE TRUE 25289.70084 27871.29496 26063.21676 30984.0246 35893.25509 24512.33274 25747.76879 28255.39414 26585.6459 23199.91855 1.090077139 1.201353138 1.12341846 1.33552299 1.547128496 1.056569776 1.109821517 1.217909196 1.145937036 1 14.50183212 TIGISVDPR ddPTM_HeLa_A485_30min_R1 2 TIGISVDPR 9 0 P26373;J3QSB4 P26373 RPL13 60S ribosomal protein L13 0 0 ; ; 109.71 0.0097436 187273000 405170 560090 525820 405060 713130 514880 665570 742170 503540 673670 FALSE FALSE TRUE 495298.6687 625587.6534 720342.6992 427187.4021 642128.2732 541838.3206 523365.5323 560151.6438 604595.8593 505736.467 0.979361191 1.236983477 1.424343994 0.844683803 1.269689483 1.071384715 1.034858205 1.107595913 1.1954761 1 18.94802628 -5.252590867 24.999925 1.085608038 1.215904912 0.155870898 0.146436209 1296.716961 3663641.34 0.039023878 0.066311078 5.59E-06 5.252590867 0.130296874 TIGYTS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TIGYTSPR 8 0 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-6;Q8IZD2-2;Q8IZD2-8 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 TIGYT(0.017)S(0.983)PR;TIGYT(0.054)S(0.945)PR ; 82.831 0.0070129 638700000 1503470 1858020 1690020 1556850 2160350 1725560 2236670 2239140 1558890 2046350 TRUE FALSE FALSE 1837911.715 2075299.276 2315228.726 1641896.773 1945257.969 1815907.653 1758787.183 1689987.404 1871744.924 1536232.605 1.196375932 1.350901725 1.507082142 1.06878136 1.266252234 1.18205254 1.144870364 1.100085624 1.218399426 1 20.55096524 -6.577190237 0.271601052 0.999050128 1.392199313 0.380278293 0.109152892 2.610929313 0.501217602 0.197343453 0.363367078 2.65E-07 6.577190237 0.393149185 TIGYTS(ph)PR ddPTM_HeLa_A486_30min_R1 3 TIGYTSPR 8 0 Q8IZD2-5;Q8IZD2-7;Q8IZD2;Q8IZD2-6;Q8IZD2-2;Q8IZD2-8 Q8IZD2-5 KMT2E Histone-lysine N-methyltransferase 2E 1 0 TIGYT(0.041)S(0.958)PR;TIGY(0.001)T(0.01)S(0.989)PR;TIGYTS(1)PR ;; 98.254 0.0025399 1210500000 3044680 3061520 2117870 918360 2885530 2897360 3123870 3105280 2498660 3243760 TRUE FALSE FALSE 2831263.655 2818914.005 2937965.983 2137988.491 2523599.921 2539913.181 2342244.685 2398275.532 2715245.861 2431501.383 1.164409642 1.15933062 1.208292952 0.879287385 1.03787723 1.044586361 0.963291529 0.986335253 1.116695174 1 21.21341598 -5.240265681 24.99886473 1.00484621 1.175543045 0.646455264 0.058734859 506.080779 597506.9414 0.015684886 0.027132904 5.75E-06 5.240265681 0.170696835 TIHT(ph)FPCLK ddPTM_HeLa_A486_30min_R1 1 TIHTFPCLK 9 0 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 T(0.027)IHT(0.973)FPCLK 107.06 0.0013727 220050000 289090 356530 292050 174670 473520 464030 546850 530400 298430 380160 TRUE FALSE FALSE 268826.2839 328277.2643 405139.5814 406640.5873 414126.7062 406782.6965 410022.346 409639.4986 324298.1527 284965.4616 0.943364443 1.151989657 1.421714685 1.426982011 1.453252278 1.4274807 1.438849269 1.437505782 1.13802617 1 18.12042755 -4.51638918 2.971532738 1.3717004 0.9525079 0.40977618 0.148098611 0.231447532 3.826923141 0.036766545 0.172072735 3.05E-05 4.51638918 -0.4191925 TILET(ph)SFHQHR ddPTM_HeLa_A485_30min_R1 1 TILETSFHQHR 11 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 TILET(0.593)S(0.407)FHQHR 71.241 0.024435 80570000 42268 48888 51839 37286 62737 45750 56499 69922 41902 46972 TRUE FALSE FALSE 51670.37078 54605.02633 71016.4033 39322.83977 56490.684 48145.39926 44427.5271 52773.51987 50311.34705 35262.74486 1.465296334 1.548518885 2.013921593 1.115138368 1.601993385 1.365333285 1.259899854 1.496580033 1.426756404 1 15.10585716 -12.18283678 0.113543324 2.55E-14 1.781547038 0.340704744 0.215964405 113.0754732 1.304858158 30.54976673 2.796700009 6.56E-13 12.18283678 1.781547038 TILETS(ph)FHQHR ddPTM_HeLa_A485_30min_R1 3 TILETSFHQHR 11 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 TILET(0.006)S(0.994)FHQHR;TILET(0.018)S(0.982)FHQHR;TILET(0.045)S(0.955)FHQHR ;; 145 6.45E-07 1020760000 514043 581255 548546 439871 758970 515355 687410 776940 483170 596778 TRUE FALSE FALSE 628390.0919 649227.716 751475.9923 463900.0389 683404.2819 542338.1909 540539.2379 586394.2468 580137.7871 448012.2275 1.402618173 1.449129457 1.677355988 1.035462897 1.525414352 1.210543279 1.206527868 1.308880006 1.294915075 1 18.77317858 -7.78684199 0.045521757 3.70E-13 2.460558318 0.373718875 0.158587088 59.65475246 2.248921806 62.04539132 57.60809662 1.63E-08 7.78684199 2.460558318 TILETS(ph)FHQHR ddPTM_HeLa_A486_30min_R1 4 TILETSFHQHR 11 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 TILET(0.177)S(0.823)FHQHR;TILET(0.013)S(0.987)FHQHR;TILET(0.018)S(0.982)FHQHR;TILET(0.025)S(0.975)FHQHR ;;; 156.6 2.00E-07 1221030000 647790 734170 615881 229149 788760 635878 834650 822940 584133 672320 TRUE FALSE FALSE 602383.2662 675991.6954 854366.6171 533470.4525 689826.3659 557429.8375 625811.742 635574.5267 634766.1188 503966.6959 1.195283877 1.341341999 1.695283883 1.058543068 1.368793556 1.106084672 1.24177202 1.261143905 1.259539815 1 18.94296887 -5.293959116 24.99822115 1.20272607 1.403707467 0.303908033 0.154698534 835.4349154 642204.6231 0.042534944 0.063094399 5.08E-06 5.293959116 0.200981397 TILK(ac)FPSVQQRK ddPTM_HeLa_A486_30min_R1 1 TILKFPSVQQRK 12 2 Q9NZP2 Q9NZP2 OR6C2 Olfactory receptor 6C2 0 1 TILK(1)FPSVQQRK 61.65 0.028232 0 71487 32246 19782 3181.2 34722 24391 41723 45230 37333 39069 FALSE TRUE FALSE 66476.13046 29690.70952 27442.12018 7405.994369 30366.84299 21381.88641 31283.4641 34932.11636 40569.0545 29285.8681 2.269904728 1.013823781 0.937043085 0.252886284 1.036911144 0.73010936 1.068210237 1.192797708 1.385277512 1 14.83791704 -4.260255434 4.549463996 0.933842408 2.357519252 0.65725209 0.284456457 0.124339326 6.710908071 0.075830917 0.568569175 5.49E-05 4.260255434 1.423676844 TINEVENQILTR ddPTM_HeLa_A485_30min_R1 2 TINEVENQILTR 12 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H7C5W8;H0YJW3 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 259.18 5.13E-39 75518000 26871.1 35901 33145.9 29981.1 52546 32825 38385 44412 34031 42486 FALSE FALSE TRUE 32848.48349 40099.30965 45407.94773 31618.89158 47314.33574 34543.66624 30183.73117 33519.88736 40860.70955 31895.0221 1.029893737 1.257227837 1.423668797 0.99134252 1.483439503 1.083042556 0.946346144 1.050944165 1.281099898 1 14.96104366 -6.484894936 24.96807018 1.065392966 1.239771941 0.20444483 0.162618976 853.7117924 561174.9971 0.055697632 0.049109287 3.27E-07 6.484894936 0.174378975 TIPSWATLSAS(ph)QLAR ddPTM_HeLa_A486_30min_R1 1 TIPSWATLSASQLAR 15 0 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK4 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 TIPSWATLS(0.023)AS(0.976)QLAR 116 0.00014229 60308000 55657 61657 52356 22659 67919 51084 57007 57664 48549 68438 TRUE FALSE FALSE 51755.73171 56771.07477 72629.64534 52751.29712 59399.9657 44781.77546 42743.24564 44535.166 52757.26641 51300.67934 1.008870299 1.106633976 1.415763812 1.028276775 1.157878735 0.872927533 0.833190636 0.868120395 1.028393134 1 15.64669031 -6.257627323 24.60711895 0.906825378 1.150163643 0.469970823 0.117833558 231.0277668 1491303.271 0.040453856 0.038977325 5.53E-07 6.257627323 0.243338264 TIQEVLEEQS(ph)EDEDR ddPTM_HeLa_A485_30min_R1 4 TIQEVLEEQSEDEDR 15 0 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR ;;; 399.94 1.20E-135 5212090000 915360 1321290 1004640 767956 815125 903570 958760 935230 739268 800704 TRUE FALSE FALSE 1118978.674 1475803.372 1376298.143 809907.4917 733968.2929 950879.528 753913.0937 705863.3761 887632.3066 601103.2287 1.861541613 2.455157952 2.28962028 1.347368394 1.221035353 1.581890568 1.254215678 1.174279795 1.476672 1 19.19725324 -5.266351638 19.56570878 1.308241098 2.227412396 0.805428352 0.204417476 7.81387315 31125.01207 0.054870067 0.084978794 5.42E-06 5.266351638 0.919171298 TIQEVLEEQS(ph)EDEDR ddPTM_HeLa_A486_30min_R1 3 TIQEVLEEQSEDEDR 15 0 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR;TIQEVLEEQS(1)EDEDR ;; 317.03 4.53E-78 4482970000 1461000 1455130 1036930 348727 1046700 1041480 1064290 1069190 1202880 1498590 TRUE FALSE FALSE 1358591.445 1339820.199 1438457.066 811854.0797 915413.1259 912992.7866 797993.3851 825758.7773 1307146.607 1123333.31 1.209428611 1.192718303 1.280525605 0.72271878 0.814907844 0.81275324 0.710379883 0.73509685 1.163632019 1 20.09935463 -5.256797685 24.99212556 0.831316817 1.224073607 0.62111423 0.13400124 241.0285611 1297758.097 0.036234625 0.06019321 5.54E-06 5.256797685 0.392756791 TIQEVLEEQS(ph)EDEDREAK ddPTM_HeLa_A485_30min_R1 6 TIQEVLEEQSEDEDREAK 18 1 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK ;;;;; 288.64 1.31E-70 7737130000 1109500 909897 904540 1893860 1569340 1229720 2104970 1967050 1095789 2517820 TRUE FALSE FALSE 1356304.447 1016301.539 1239166.987 1997316.776 1413090.999 1294106.238 1655225.963 1484627.903 1315703.801 1890173.811 0.717555412 0.537676235 0.655583619 1.056684187 0.747598444 0.684649332 0.875700401 0.785445177 0.696075564 1 20.85008747 -13.99999416 0.033679682 2.158988946 1.85E-07 0.257352159 0.130478287 1797.620618 4.535631443 239.2827594 86.72004816 1.00E-14 13.99999416 -2.158988761 TIQEVLEEQS(ph)EDEDREAK ddPTM_HeLa_A486_30min_R1 5 TIQEVLEEQSEDEDREAK 18 1 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TIQEVLEEQS(1)EDEDREAK;T(0.001)IQEVLEEQS(0.999)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK ;;;; 313.77 1.58E-89 7373710000 1454790 1521460 881797 887264 1567630 1795890 2472950 2203830 1269360 2399090 TRUE FALSE FALSE 1352816.734 1400893.969 1223252.414 2065595.432 1371003.228 1574331.351 1854191.754 1702066.018 1379389.147 1798342.249 0.752257661 0.778991857 0.68021113 1.148610857 0.762370583 0.87543478 1.031056105 0.9464639 0.767033721 1 20.77823618 -5.213466921 24.99977185 0.925343501 0.741337328 0.387781771 0.112441009 433.8580933 226094.7249 0.029771108 0.051564936 6.12E-06 5.213466921 -0.184006173 TIQEVLEEQS(ph)EDEDREAKR ddPTM_HeLa_A485_30min_R1 4 TIQEVLEEQSEDEDREAKR 19 2 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR ;;; 231.17 1.02E-35 1530200000 483520 540184 494787 767693 830738 677310 991758 1104880 535187 1019253 TRUE FALSE FALSE 591077.3559 603353.8198 677829.3011 809630.1247 748026.8078 712772.9043 779860.8014 833906.4476 642594.1219 765171.9851 0.772476472 0.788520531 0.885852219 1.058102153 0.977593041 0.931519865 1.019196751 1.089828776 0.839803514 1 19.54542453 -4.956990608 3.224694922 0.99011067 0.7801933 0.61974228 0.065142875 0.149447269 3.188701704 0.017417806 0.039725157 1.10E-05 4.956990608 -0.20991737 TIQEVLEEQS(ph)EDEDREAKR ddPTM_HeLa_A486_30min_R1 3 TIQEVLEEQSEDEDREAKR 19 2 P18858-2;P18858;M0R0Q7;P18858-3 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR ;; 256.23 2.41E-58 3016560000 1218380 1217100 867980 800440 1644540 1504370 2105120 2102760 1068540 1949620 TRUE FALSE FALSE 1132977.854 1120652.563 1204085.101 1863464.772 1438266.458 1318776.125 1578396.71 1624007.451 1161161.908 1461422.462 0.775256904 0.766823141 0.823913093 1.275103415 0.984155161 0.902392127 1.080041365 1.111251191 0.794542261 1 20.47894186 -5.025506642 24.72530627 1.023819748 0.777121978 0.445202188 0.119796346 541.462173 524876.2759 0.032100594 0.05590874 9.43E-06 5.025506642 -0.24669777 TIS(ph)AQDTLAYATALLNEK ddPTM_HeLa_A485_30min_R1 2 TISAQDTLAYATALLNEK 18 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 TIS(1)AQDTLAYATALLNEK;TIS(1)AQDTLAYATALLNEK ; 440.29 3.77E-203 2989600000 1216570 1085160 818200 1385370 1204280 1055440 1468260 1373310 851260 1658940 TRUE FALSE FALSE 1487191.799 1212060.022 1120886.228 1461049.255 1084377.655 1110701.206 1154554.256 1036503.569 1022100.074 1245396.789 1.194150983 0.973232012 0.900023381 1.173159646 0.870708568 0.891845247 0.927057358 0.832267739 0.820702352 1 20.24817403 -5.794509559 24.99978959 0.883945612 1.042496746 0.436217746 0.093489722 189.537305 143281.963 0.028773364 0.032627993 1.61E-06 5.794509559 0.158551134 TIS(ph)AQDTLAYATALLNEK ddPTM_HeLa_A486_30min_R1 2 TISAQDTLAYATALLNEK 18 0 Q9UPU5;A0A0U1RQI9 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 TIS(1)AQDTLAYATALLNEK;T(0.001)IS(0.999)AQDTLAYATALLNEK ; 475.4 2.43E-250 2019220000 1494810 1407350 821190 565480 1191000 1448470 1703360 1650830 1120690 1681670 TRUE FALSE FALSE 1390031.538 1295826.461 1139176.76 1316466.018 1041613.674 1269772.498 1277161.312 1274972.046 1217832.312 1260568.886 1.102701767 1.027969574 0.903700522 1.044342782 0.826304445 1.007301158 1.013162649 1.011425921 0.966097391 1 20.26564353 -4.475964148 4.349178017 0.971590569 1.092958787 0.310887206 0.060608277 0.252859046 10.0074753 0.015069743 0.062574464 3.34E-05 4.475964148 0.121368219 TIS(ph)DGTISASK ddPTM_HeLa_A485_30min_R1 6 TISDGTISASK 11 0 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 TIS(0.999)DGTISASK;TIS(1)DGTISASK;TIS(1)DGTISASK;TIS(1)DGTISASK;T(0.001)IS(0.999)DGTISASK;TIS(1)DGTISASK ;;;;; 283.44 4.49E-35 3764190000 7812170 6658880 4896670 8427540 8192950 6946980 10104250 9602760 5718680 10749020 TRUE FALSE FALSE 9549960.265 7437578.091 6708152 8887915.171 7377231.131 7310713.131 7945394.443 7247668.053 6866366.621 8069487.135 1.183465579 0.921691548 0.831298432 1.101422559 0.914213135 0.905969984 0.984621985 0.89815721 0.850904959 1 22.94404555 -4.259800032 24.24609784 0.933141331 1.183465706 0.503875622 0.07417901 77.99613596 1153407.141 0.018139195 0.111845477 5.50E-05 4.259800032 0.250324375 TIS(ph)DGTISASK ddPTM_HeLa_A486_30min_R1 5 TISDGTISASK 11 0 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 TIS(0.984)DGT(0.016)ISASK;T(0.001)IS(0.991)DGT(0.008)ISASK;TIS(1)DGTISASK;T(0.001)IS(0.972)DGT(0.027)ISASK;TIS(1)DGTISASK ;;;; 315.09 1.01E-54 4398350000 10155500 9619830 4981290 3601360 8813390 9987150 11849800 11240100 7445650 11972900 TRUE FALSE FALSE 9443651.893 8857519.636 6910178.892 8384148.083 7707932.445 8755036.975 8884854.706 8680974.6 8091044.937 8974807.91 1.052240002 0.986931389 0.769952846 0.934186912 0.858840938 0.975512464 0.989977144 0.967260212 0.90152848 1 23.09744963 -6.336178205 24.99984416 0.966254599 0.916527662 0.088820916 0.073807878 357.4771373 119572.2626 0.027207203 0.023994498 4.61E-07 6.336178205 -0.049726938 TIS(ph)PPTLGTLR ddPTM_HeLa_A485_30min_R1 1 TISPPTLGTLR 11 0 Q9UQ84;Q9UQ84-4 Q9UQ84 EXO1 Exonuclease 1 1 0 T(0.004)IS(0.976)PPT(0.014)LGT(0.006)LR 57.792 0.034348 58101000 85462 119040 98641 81629 116280 111540 117900 138690 79720 108590 TRUE FALSE FALSE 104472.7271 132960.6925 135132.4107 86088.18557 104702.7549 117380.0619 92709.70185 104676.06 95719.07276 81520.51145 1.281551418 1.631009057 1.657649201 1.05603098 1.284373136 1.439883777 1.137256136 1.284045674 1.174171642 1 16.31487548 -5.984197608 0.169414411 0.906054876 1.763091066 0.38031174 0.166885847 9.927259263 0.656036044 0.857989056 2.270563895 1.04E-06 5.984197608 0.857036189 TIS(ph)PPTLGTLR ddPTM_HeLa_A486_30min_R1 1 TISPPTLGTLR 11 0 Q9UQ84;Q9UQ84-4 Q9UQ84 EXO1 Exonuclease 1 1 0 TIS(1)PPTLGTLR 104.07 0.00082427 64712000 119730 121490 120150 45061 123670 110600 144630 129810 119690 117660 TRUE FALSE FALSE 111337.5453 111862.6899 166675.2977 104904.2853 108158.1554 96955.2965 108442.0443 100255.0967 130064.8256 88197.17016 1.262370948 1.26832516 1.889803238 1.189429151 1.226322287 1.099301671 1.229541085 1.136715572 1.474705201 1 16.42844475 TIS(ph)PSTSNNIPLMR ddPTM_HeLa_A485_30min_R1 3 TISPSTSNNIPLMR 14 0 O94806;O94806-2;F8WBA3;Q15139 O94806 PRKD3;PRKD1 Serine/threonine-protein kinase D3;Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 0 TIS(0.984)PS(0.009)T(0.003)S(0.004)NNIPLMR;TIS(0.998)PS(0.002)TSNNIPLMR;T(0.039)IS(0.961)PSTSNNIPLMR ;; 221.85 9.53E-28 540760000 187175 270750 245600 237002 327430 258332 314980 328800 238394 355170 TRUE FALSE FALSE 228811.433 302411.8573 336457.6603 249948.8191 294829.9195 271857.8641 247681.9498 248161.2845 286237.4891 266632.6554 0.858152324 1.134189122 1.261877169 0.937427633 1.105753228 1.019597032 0.928925789 0.930723523 1.073527504 1 18.02449396 -6.517151448 9.504110265 0.977003899 1.067592037 0.094850955 0.108970297 0.298743127 354.1697062 0.040590311 0.033201236 3.04E-07 6.517151448 0.090588138 TIS(ph)PSTSNNIPLMR ddPTM_HeLa_A486_30min_R1 2 TISPSTSNNIPLMR 14 0 O94806;O94806-2;F8WBA3;Q15139 O94806 PRKD3;PRKD1 Serine/threonine-protein kinase D3;Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 0 TIS(1)PSTSNNIPLMR;TIS(0.999)PS(0.001)TSNNIPLMR ; 247.11 1.20E-35 589020000 445440 498810 440310 165738 555800 539340 560410 553800 479130 557020 TRUE FALSE FALSE 414216.9563 459282.479 610809.8239 385846.4399 486086.3814 472801.7144 420189.4906 427711.8294 520661.3742 417538.5664 0.992044782 1.099976184 1.462882409 0.924097726 1.164171218 1.132354595 1.006348933 1.024364846 1.246977923 1 18.67154993 TIS(ph)QEFLTPGK ddPTM_HeLa_A485_30min_R1 5 TISQEFLTPGK 11 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 TIS(1)QEFLTPGK;TIS(1)QEFLTPGK;T(0.003)IS(0.997)QEFLTPGK;TIS(1)QEFLTPGK;T(0.004)IS(0.996)QEFLTPGK ;;;; 206.88 6.80E-15 2513447000 2774810 2208620 1461930 3294720 2586080 2125280 3065460 2371610 1971900 4024820 TRUE FALSE FALSE 3392056.912 2466898.897 2002758.743 3474702.211 2328600.795 2236556.374 2410499.428 1789968.929 2367642.243 3021506.445 1.122637655 0.816446677 0.66283451 1.149990005 0.770675435 0.740212346 0.797780667 0.592409436 0.783596622 1 21.52683659 -5.957709603 24.99997287 0.757947918 0.915979674 0.173038485 0.161247915 248.0319005 146622.9769 0.049200234 0.055787786 1.10E-06 5.957709603 0.158031756 TIS(ph)QEFLTPGK ddPTM_HeLa_A486_30min_R1 5 TISQEFLTPGK 11 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 T(0.026)IS(0.974)QEFLTPGK;TIS(1)QEFLTPGK;TIS(1)QEFLTPGK;TIS(1)QEFLTPGK;TIS(1)QEFLTPGK ;;;; 188.13 1.08E-10 2615393000 3162440 3434470 1657366 1398388 2444400 3511770 3991420 3689400 2743320 4298310 TRUE FALSE FALSE 2940769.287 3162310.089 2299142.501 3255517.935 2137800.559 3078523.522 2992724.499 2849404.159 2981113.186 3221985.199 0.912719676 0.981478776 0.713579473 1.010407477 0.663504153 0.955474136 0.928844894 0.884362895 0.925241118 1 21.61951844 TIS(ph)QSSSLK ddPTM_HeLa_A485_30min_R1 6 TISQSSSLK 9 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 TIS(0.882)QS(0.115)S(0.003)SLK;TIS(0.999)QS(0.001)SSLK;TIS(0.998)QS(0.002)SSLK;TIS(1)QSSSLK;T(0.004)IS(0.996)QSSSLK;T(0.001)IS(0.994)QS(0.004)SSLK ;;;;; 204 6.92E-10 5432100000 4215240 3998400 3091420 4599370 5118330 3741920 5370970 5096320 3055250 5095170 TRUE FALSE FALSE 5152905.596 4465978.099 4235064.903 4850621.937 4608731.094 3937841.145 4223418.383 3846439.529 3668410.651 3825037.889 1.347151517 1.167564408 1.107195543 1.268123893 1.204885083 1.029490755 1.104150731 1.005595145 0.959052108 1 21.86704261 -6.55260077 0.914346572 0.981055187 1.223778217 0.678821741 0.068243192 0.367386538 0.630787375 0.049247273 0.034213647 2.80E-07 6.55260077 0.242723029 TIS(ph)QSSSLK ddPTM_HeLa_A486_30min_R1 6 TISQSSSLK 9 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 TIS(1)QSSSLK;T(0.001)IS(0.997)QS(0.002)SSLK;TIS(1)QSSSLK;TIS(1)QSSSLK;TIS(0.999)QSSSLK;TIS(0.999)QSSSLK ;;;;; 203.03 7.50E-10 5279690000 4118780 3943840 2352710 1488461 4008880 4082760 4987980 4588120 3071040 4688300 TRUE FALSE FALSE 3830074.791 3631315.755 3263742.32 3465212.431 3506048.889 3579070.582 3739934.647 3543505.234 3337240.22 3514319.164 1.089848307 1.033291396 0.928698325 0.986026672 0.997646692 1.018425025 1.064198916 1.0083049 0.949612162 1 21.74481379 TISHVIIGLK ddPTM_HeLa_A485_30min_R1 2 TISHVIIGLK 10 0 E7ETR0;Q9Y265-2;Q9Y265 E7ETR0 RUVBL1 RuvB-like 1 0 0 ; ; 107.79 0.0026047 42841000 130081 145361 124481 138127 194688 157688 187346 221563 117669 196726 FALSE FALSE TRUE 159017.0697 162359.7045 170531.702 145672.5283 175304.1791 165944.2998 147317.9966 167224.3269 141284.089 147685.8287 1.07672531 1.099358726 1.154692387 0.98636768 1.187007452 1.123630489 0.997509361 1.132297718 0.956652986 1 17.17217187 -7.76645225 24.99787906 0.978326441 1.094044451 0.3703055 0.060695913 137.6305332 686289.4391 0.050832707 0.014712327 1.71E-08 7.76645225 0.11571801 TISHVIIGLK ddPTM_HeLa_A486_30min_R1 1 TISHVIIGLK 10 0 E7ETR0;Q9Y265-2;Q9Y265 E7ETR0 RUVBL1 RuvB-like 1 0 0 98.249 0.0053782 32342000 57056 59137 42661 22835 63338 55089 66255 69301 50681 70821 FALSE FALSE TRUE 53056.66904 54450.76875 59180.4817 53161.03402 55393.55744 48292.67928 49677.29823 53522.67513 55074.06989 53086.96063 0.999429397 1.025690077 1.114783762 1.001395322 1.043449404 0.909690039 0.93577213 1.008207562 1.037431212 1 15.69606993 -6.178117491 24.99999334 0.976077616 1.038673155 0.297063163 0.045071774 118.3712145 35514.64715 0.015721139 0.015721139 6.64E-07 6.178117491 0.062595538 TISIDENMEPS(ph)PTGDFYPSPSS(ph)PAAGSR ddPTM_HeLa_A486_30min_R1 1 TISIDENMEPSPTGDFYPSPSSPAAGSR 28 0 A0A1B0GW37;U3KQE8;A0A0A0MRX8;O00712;O00712-4;Q5VW31;A0A1B0GWB8;A0A1B0GWJ4;A0A1B0GU97;A0A1B0GWI9;Q5VW27;A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GW37;A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 2 0 T(0.004)IS(0.004)IDENMEPS(0.843)PT(0.121)GDFY(0.027)PS(0.043)PS(0.335)S(0.6)PAAGS(0.023)R 57.021 0.024274 120150000 61177 54243 55291 24390 64378 53171 74019 72743 56984 59672 TRUE FALSE FALSE 56888.80822 49944.58713 76701.15594 56781.1526 56303.11094 46611.30262 55498.66331 56181.00687 61923.419 44729.7428 1.271834011 1.11658561 1.714768544 1.26942721 1.258739877 1.042065071 1.240755252 1.256010058 1.384390232 1 15.44894684 -5.650975598 3.915036524 1.203818637 1.361733397 0.154888563 0.174027322 0.461093485 13.13977667 0.053641102 0.070111271 2.23E-06 5.650975598 0.157914761 TISINS(ph)PK ddPTM_HeLa_A485_30min_R1 4 TISINSPK 8 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 TIS(0.002)INS(0.998)PK;TISINS(1)PK;TIS(0.005)INS(0.995)PK;TIS(0.053)INS(0.947)PK ;;; 129 0.00056632 1879040000 3533940 3292950 2188510 5696000 4416750 3467570 5936600 5541770 2738160 7263500 TRUE FALSE FALSE 4320052.761 3678031.858 2998130.92 6007158.057 3977002.862 3649126.603 4668196.912 4182642.218 3287683.596 5452843.125 0.792256931 0.674516353 0.549828934 1.10165613 0.729344815 0.669215402 0.856103285 0.767057134 0.602930163 1 22.37857722 -10.6456597 2.911579472 1.022978508 0.752248515 0.210947032 0.145403745 101835073.1 97669274.72 17554548.31 0.037075935 2.26E-11 10.6456597 -0.270729993 TISINS(ph)PK ddPTM_HeLa_A486_30min_R1 4 TISINSPK 8 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 TISINS(1)PK;TISINS(1)PK;TIS(0.003)INS(0.997)PK;TIS(0.002)INS(0.998)PK ;;; 131.12 0.00053969 1839150000 5186770 4698940 2196330 3098820 4133290 5226520 7193500 6590200 3412720 8929600 TRUE FALSE FALSE 4823204.208 4326578.881 3046807.796 7214209.566 3614854.227 4581725.102 5393610.215 5089755.323 3708537.317 6693570.038 0.720572756 0.646378369 0.455184271 1.077782039 0.540048764 0.684496476 0.805789763 0.760394721 0.554044747 1 22.67434445 -10.6864091 2.503649543 1.049629153 0.697180883 0.239401156 0.163608962 18241706.35 14329499.27 5736087.717 0.040438297 2.06E-11 10.6864091 -0.35244827 TISLVIR ddPTM_HeLa_A485_30min_R1 2 TISLVIR 7 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 0 0 ; ; 134.12 0.0053451 63313000 95286 115224 113722 107597 152966 124952 157401 166692 96343 159802 FALSE FALSE TRUE 116482.042 128698.4445 155792.5002 113474.7517 137736.1679 131494.2935 123770.9905 125810.5256 115678.1564 119966.3023 0.970956341 1.072788291 1.29863551 0.945888549 1.148123809 1.096093577 1.031714641 1.048715541 0.964255413 1 16.87226969 -7.230009554 1.382202231 0.987907806 1.093435383 0.151819412 0.092451305 0.852733864 2.917130587 0.074852831 0.029342333 5.89E-08 7.230009554 0.105527577 TISS(ph)LEEIVEK ddPTM_HeLa_A485_30min_R1 1 TISSLEEIVEK 11 0 Q8IY95-2;Q8IY95 Q8IY95-2 TMEM192 Transmembrane protein 192 1 0 TIS(0.024)S(0.976)LEEIVEK 152.4 5.20E-07 13147000 57026 44057 29113 72142 46930 44082 83699 70170 41830 131840 TRUE FALSE FALSE 69711.23696 49209.08291 39883.11019 76082.93479 42257.48442 46390.06536 65816.02489 52960.69748 50224.89731 98974.71434 0.704333803 0.497188431 0.40296262 0.76871083 0.426952325 0.468706231 0.664978175 0.535093209 0.507451804 1 16.59477238 -10.50499789 2.823051104 1.018012646 0.549815412 0.574666612 0.115357878 20057448.63 21507801.48 2792412.705 0.028503432 3.13E-11 10.50499789 -0.468197234 TISS(ph)LEEIVEK ddPTM_HeLa_A486_30min_R1 1 TISSLEEIVEK 11 0 Q8IY95-2;Q8IY95 Q8IY95-2 TMEM192 Transmembrane protein 192 1 0 TIS(0.162)S(0.838)LEEIVEK 78.692 0.008011 12933000 52701 53171 40311 19501 64061 74954 68576 58972 65939 91726 TRUE FALSE FALSE 49006.93205 48957.53631 55920.49877 45399.31353 56025.87203 65706.93756 51417.55948 45545.36295 71654.64561 68757.21256 0.712753328 0.71203492 0.813303749 0.660284381 0.814836291 0.955637018 0.747813321 0.662408513 1.04214006 1 16.06922344 -13.99999999 0.065575042 1.84890709 0.464960317 0.381529257 0.105013386 391.4982416 1.856845269 50.32762417 7.115563604 1.00E-14 13.99999999 -1.383946773 TIT(ph)PPAAPKPK ddPTM_HeLa_A485_30min_R1 1 TITPPAAPKPK 11 1 Q96BD5-2;Q96BD5;Q96BD5-3 Q96BD5-2 PHF21A PHD finger protein 21A 1 0 T(0.12)IT(0.88)PPAAPKPK 71.548 0.014932 398150000 376460 359500 232480 511120 475500 428840 644380 646180 321020 697520 TRUE FALSE FALSE 460202.2282 401540.3978 318484.0263 539041.1914 428157.5504 451293.3993 506702.9489 487703.3418 385445.7694 523641.1009 0.878850471 0.766823683 0.60821052 1.029409629 0.817654591 0.861837236 0.967653127 0.931369484 0.736087692 1 18.99821881 -5.265142844 24.99011148 0.900439567 0.752847775 0.324782802 0.102160107 389.5038852 2628286.514 0.028146792 0.043628024 5.43E-06 5.265142844 -0.147591792 TITLVKS(ph)PISVPGGSALISNLGK ddPTM_HeLa_A485_30min_R1 2 TITLVKSPISVPGGSALISNLGK 23 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 TITLVKS(0.991)PIS(0.009)VPGGSALISNLGK;TITLVKS(0.96)PIS(0.04)VPGGSALISNLGK ; 228.62 1.01E-38 823710000 366416 381338 225780 453479 659930 525079 811080 989100 379316 696620 TRUE FALSE FALSE 447923.9751 425932.1619 309305.4175 478251.4095 594225.052 552571.3245 637786.1321 746521.6742 455441.2419 522965.4543 0.85650777 0.814455636 0.591445219 0.914499047 1.136260621 1.056611522 1.219556907 1.427477987 0.870882079 1 18.99635612 -5.616685239 3.42691128 1.14275085 0.757903835 0.534731718 0.15212165 0.174161865 4.032656914 0.046419627 0.062174189 2.42E-06 5.616685239 -0.384847015 TITLVKS(ph)PISVPGGSALISNLGK ddPTM_HeLa_A486_30min_R1 1 TITLVKSPISVPGGSALISNLGK 23 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 TIT(0.001)LVKS(0.999)PISVPGGSALISNLGK 210.93 1.46E-29 303310000 299920 241410 131430 136810 299970 286280 393830 401220 169730 383080 TRUE FALSE FALSE 278897.1568 222279.7924 182323.2158 318500.594 262344.9655 250961.6843 295289.5685 309870.9646 184442.3331 287154.2746 0.971245012 0.774077951 0.634931227 1.109161946 0.913602856 0.873961165 1.028330743 1.079109705 0.642310944 1 18.13146651 -5.261184304 24.99999265 0.951434852 0.791484061 0.196096058 0.144764315 37.12456133 3638415.975 0.039428529 0.063144212 5.48E-06 5.261184304 -0.159950791 TIVITSHPGQIVK ddPTM_HeLa_A485_30min_R1 1 TIVITSHPGQIVK 13 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 199.96 5.93E-15 56970000 75156 78928 70394 83255 120060 86290 115340 126560 78046 116490 FALSE FALSE TRUE 91874.19291 88157.94302 96435.66994 87803.00984 108106.4048 90808.01097 90696.66676 95520.96156 93709.11632 87451.18684 1.050576856 1.008081722 1.10273712 1.004023079 1.236191397 1.038385118 1.037111902 1.092277475 1.071559114 1 16.41619034 -4.758124139 24.99838943 1.076958735 1.029329289 0.064934357 0.0644238 217.8052091 1642270.857 0.016093741 0.039101875 1.75E-05 4.758124139 -0.047629447 TIVITSHPGQIVK ddPTM_HeLa_A486_30min_R1 1 TIVITSHPGQIVK 13 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 144.47 3.01E-05 49772000 24761 27998 19122 8126.8 31484 28621 32556 31573 25236 35589 FALSE FALSE TRUE 23025.38177 25779.33651 26526.5505 18919.60111 27534.98314 25090.03202 24410.14446 24384.51713 27423.4768 26677.28275 0.86310821 0.966340416 0.99434979 0.709202706 1.032150965 0.940501784 0.915016146 0.914055504 1.027971141 1 14.70332411 -7.758004196 24.80538981 1.013985596 0.918724604 0.179809371 0.082912953 129.3789777 934304.2268 0.059831377 0.020570621 1.75E-08 7.758004196 -0.095260993 TIVLVPS(ph)PLGQQQDMIFEAR ddPTM_HeLa_A485_30min_R1 1 TIVLVPSPLGQQQDMIFEAR 20 0 Q96R06;F5GZT2 Q96R06 SPAG5 Sperm-associated antigen 5 1 0 TIVLVPS(1)PLGQQQDMIFEAR 136.66 2.01E-07 54229000 31687 43803 40495 36134 55288 38226 45568 52791 34565 42042 TRUE FALSE FALSE 38735.66383 48925.37981 55475.78564 38107.90892 49783.33259 40227.45425 35832.02454 39843.92448 41501.87845 31561.70313 1.227299543 1.550150181 1.757693031 1.207409777 1.57733353 1.274565384 1.135300728 1.262413638 1.314944199 1 14.94588744 -6.434498972 5.139662858 1.200231683 1.469776014 0.386033309 0.1703784 0.251546431 10.935006 0.06092197 0.05291364 3.68E-07 6.434498972 0.269544331 TIVMGAS(ph)FR ddPTM_HeLa_A485_30min_R1 3 TIVMGASFR 9 0 F2Z393;P37837 F2Z393 TALDO1 Transaldolase 1 0 TIVMGAS(1)FR;TIVMGAS(1)FR;TIVMGAS(1)FR ;; 99.283 0.0018965 73359000 207636 247613 281660 219217 352291 213262 283074 301357 260205 293592 TRUE FALSE FALSE 253823.9119 276569.1864 385857.7549 231192.2696 317215.6711 224428.0686 222592.9274 227448.7232 312425.7568 220404.9176 1.151625448 1.25482312 1.750676705 1.048943337 1.439240442 1.018253454 1.009927228 1.031958478 1.417508104 1 17.74979689 -6.266169146 24.97033697 1.092176715 1.332798352 0.238208891 0.208715743 597.2754463 3153246.826 0.071836758 0.065408675 5.42E-07 6.266169146 0.240621637 TIVMGAS(ph)FR ddPTM_HeLa_A486_30min_R1 3 TIVMGASFR 9 0 F2Z393;P37837 F2Z393 TALDO1 Transaldolase 1 0 TIVMGAS(1)FR;TIVMGAS(1)FR;TIVMGAS(1)FR ;; 124.67 0.00030383 154372000 198435 219457 211976 86207 258068 218684 248239 244987 188067 198446 TRUE FALSE FALSE 184525.7312 202066.4281 294058.7841 200694.2527 225698.7051 191704.9915 186126.9766 189208.8081 204368.799 148753.8299 1.240477178 1.358394793 1.976814878 1.349170322 1.517263153 1.28873987 1.251241576 1.271959238 1.373872519 1 17.18256729 -6.32702741 3.336971342 1.248024079 1.502669386 0.273694959 0.204175708 0.37653135 8.304231308 0.077200851 0.068693538 4.71E-07 6.32702741 0.254645307 TK(ac)AQKETIAK ddPTM_HeLa_A485_30min_R1 1 TKAQKETIAK 10 2 J3KNA1;Q12840 J3KNA1 KIF5A Kinesin-like protein;Kinesin heavy chain isoform 5A 0 1 TK(1)AQKETIAK 99.688 0.0014053 0 175850 137320 185510 276950 321370 134650 210180 163490 196760 392820 FALSE TRUE FALSE 214967.2258 153378.3795 254137.8687 292079.0772 289373.2744 141700.0658 165273.326 123393.8212 236247.9272 294897.2033 0.728956475 0.520107949 0.861784601 0.9904437 0.98126829 0.480506645 0.560443857 0.418429947 0.801119592 1 18.16985261 -6.268343551 24.91447781 0.610023376 0.812223295 0.127956806 0.199900002 934.9393122 3373823.821 0.071720844 0.064631508 5.39E-07 6.268343551 0.202199919 TK(ac)AQKETIAK ddPTM_HeLa_A486_30min_R1 2 TKAQKETIAK 10 2 J3KNA1;Q12840 J3KNA1 KIF5A Kinesin-like protein;Kinesin heavy chain isoform 5A 0 1 ; TK(1)AQKETIAK;TK(1)AQKETIAK 89.886 0.0026436 0 383510 745810 507320 263870 854140 696810 787290 749670 616520 590670 FALSE TRUE FALSE 356627.9294 686709.2994 703767.8905 614302.6953 747005.7967 610844.6668 590301.7149 578986.5062 669960.45 442762.3874 0.805461213 1.550965753 1.589493395 1.387431979 1.687148272 1.379621856 1.333224618 1.307668679 1.513137676 1 18.75617314 -10.30685773 3.26686112 0.997804943 1.408765144 0.20968866 0.22857853 43555410.01 60182535.65 941811.1613 0.054621341 4.93E-11 10.30685773 0.410960201 TK(ac)DLK(ac)DFIR ddPTM_HeLa_A485_30min_R1 2 TKDLKDFIR 9 2 Q96L42;Q96L42-2 Q96L42 KCNH8 Potassium voltage-gated channel subfamily H member 8 0 2 ; TK(1)DLK(1)DFIR;TK(1)DLK(1)DFIR 94.309 0.0022041 30431000 52586 65682 69678 51583 83115 58461 71518 68062 65016 76142 FALSE TRUE FALSE 64283.57428 73362.93854 95454.79174 54400.84867 74839.77877 61521.92756 56237.59505 51369.68778 78064.11484 57161.20069 1.124601539 1.283439425 1.66992279 0.951709342 1.309275835 1.076288231 0.983842088 0.898681049 1.365683609 1 15.8027486 -5.29116228 24.99983521 1.084355322 1.351733283 0.308954998 0.188834877 841.5714574 707841.0655 0.05306076 0.078714321 5.11E-06 5.29116228 0.267377961 TK(ac)DLK(ac)DFIR ddPTM_HeLa_A486_30min_R1 1 TKDLKDFIR 9 2 Q96L42;Q96L42-2 Q96L42 KCNH8 Potassium voltage-gated channel subfamily H member 8 0 2 TK(1)DLK(1)DFIR 112.11 0.0066681 34478000 46667 60905 59424 17035 69354 57746 63905 63689 51932 54997 FALSE TRUE FALSE 43395.88429 56078.66599 82434.56423 39658.3409 60654.97462 50621.88564 47915.29308 49188.40502 56433.50757 41225.39323 1.052649372 1.360294265 1.999606499 0.961988178 1.471301299 1.227929722 1.162276193 1.193157934 1.36890162 1 15.33124563 -6.080452915 1.240951613 1.19521343 1.408490217 0.086918083 0.274313942 1.183308227 3.776955265 0.126648954 0.134104974 8.31E-07 6.080452915 0.213276787 TK(ac)PSDEEMLFIYGHYK ddPTM_HeLa_A485_30min_R1 2 TKPSDEEMLFIYGHYK 16 1 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5;P07108-6 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; TK(1)PSDEEMLFIYGHYK;TK(1)PSDEEMLFIYGHYK 185.61 1.29E-13 69155000 63619 71239 63014 64844 91168 74317 111241 102273 67227 105479 FALSE TRUE FALSE 77770.82707 79569.78135 86325.50083 68386.26353 82090.99381 78208.1232 87473.45159 77190.38639 80718.84226 79185.0265 0.98214057 1.004858934 1.090174553 0.8636262 1.036698445 0.98766303 1.104671621 0.974810388 1.019370023 1 16.27294003 TK(ac)PSDEEMLFIYGHYK ddPTM_HeLa_A486_30min_R1 2 TKPSDEEMLFIYGHYK 16 1 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5;P07108-6 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 ; TK(1)PSDEEMLFIYGHYK;TK(1)PSDEEMLFIYGHYK 191.35 3.26E-14 58940000 99250 105526 73184 37487 117359 112195 119855 122242 95225 126772 FALSE TRUE FALSE 92293.08753 97163.73544 101522.8047 87271.63049 102638.7399 98353.52162 89866.0113 94410.16512 103479.1797 95027.46605 0.971225387 1.022480547 1.068352224 0.918383222 1.080095515 1.035000992 0.945684601 0.993503974 1.088939693 1 16.53605694 -4.255505972 22.98714385 1.015573214 0.971225324 0.062799372 0.052741284 697.4364127 2701742.861 0.012842881 0.108801732 5.55E-05 4.255505972 -0.04434789 TKDGVVEITGK ddPTM_HeLa_A485_30min_R1 1 TKDGVVEITGK 11 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 99.531 0.0039591 32811000 33006 32521 33036 41340 61130 35875 55642 51436 34910 62905 FALSE FALSE TRUE 40348.07083 36324.04805 45257.39114 43598.29952 55043.68256 37753.35953 43753.63215 38821.24035 41916.11679 47223.94118 0.854398634 0.769187136 0.958356927 0.923224501 1.165588496 0.799453806 0.926513778 0.82206693 0.887603104 1 15.52723083 -4.766067189 24.99815796 0.931616797 0.811792874 0.203334045 0.097604547 173.492729 937180.3109 0.025976064 0.057072769 1.71E-05 4.766067189 -0.119823923 TKDGVVEITGKHEER ddPTM_HeLa_A485_30min_R1 1 TKDGVVEITGKHEER 15 2 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 87.932 0.0029578 6239300 5671.9 6556.8 5863.8 6603.4 14147 14368 19923 31926 7772.3 10451 FALSE FALSE TRUE 6933.594587 7323.560723 8033.063633 6964.127021 12738.47501 15120.28626 15666.28829 24096.09844 9332.129318 7845.758036 0.883738009 0.933442083 1.023873486 0.887629594 1.623613034 1.927192528 1.996784533 3.071226302 1.189449034 1 12.93769713 -5.917896845 2.681049997 1.974070892 0.929804418 0.383947425 0.528900761 0.250530258 3.654392982 0.173158508 0.19835181 1.21E-06 5.917896845 -1.044266474 TKDPTHDVKT(ph)PNTETR ddPTM_HeLa_A486_30min_R1 1 TKDPTHDVKTPNTETR 16 2 Q8WWK9-6;Q8WWK9-5;Q8WWK9 Q8WWK9-6 CKAP2 Cytoskeleton-associated protein 2 1 0 T(0.006)KDPT(0.051)HDVKT(0.933)PNT(0.007)ET(0.002)R 59.342 0.028159 113520000 148670 116180 69831 68130 115550 133950 154130 158140 103980 214640 TRUE FALSE FALSE 138249.0007 106973.4737 96871.43334 158610.0831 101056.6415 117424.6109 115565.0438 122134.9742 112993.0701 160892.7469 0.859261858 0.664874432 0.602087013 0.985812513 0.628099423 0.7298316 0.718273794 0.759108018 0.702288153 1 17.29573977 -11.02260533 2.602182068 1.301866413 0.73638227 0.349305463 0.106882318 16223428.41 7617003.902 29226825.1 0.025627291 9.49E-12 11.02260533 -0.565484143 TKDQPDGSSLS(ph)PAQS(ph)PSQSQPPAASSLR ddPTM_HeLa_A486_30min_R1 1 TKDQPDGSSLSPAQSPSQSQPPAASSLR 28 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 2 0 TKDQPDGS(0.003)S(0.011)LS(0.986)PAQS(0.958)PS(0.036)QS(0.006)QPPAASSLR 148.43 3.95E-09 523320000 457020 401720 226670 176590 323640 478920 494360 472620 349370 597210 TRUE FALSE FALSE 424985.2581 369886.2442 314442.6944 411110.4444 283046.0534 419835.7197 370665.8992 365014.7432 379653.6729 447664.7288 0.949338267 0.826257287 0.702406677 0.918344506 0.632272402 0.937835154 0.827998891 0.815375257 0.848075911 1 18.77205913 -8.269369933 2.850926281 0.999995776 0.822560914 0.23031008 0.09449687 2.660596906 26.27345824 0.086347908 0.023101377 5.38E-09 8.269369933 -0.177434861 TKDQPDGSSLS(ph)PAQS(ph)PSQSQPPAASSLREPGLESK ddPTM_HeLa_A485_30min_R1 1 TKDQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 35 2 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 2 0 TKDQPDGSSLS(1)PAQS(0.984)PS(0.016)QSQPPAASSLREPGLESK 266.88 4.13E-65 1323900000 363060 287590 169060 404400 392080 439150 642280 710360 275810 670320 TRUE FALSE FALSE 443821.4445 321221.1488 231602.3292 426491.348 353043.1385 462143.2149 505051.6311 536143.0962 331162.5371 503221.5603 0.881960312 0.638329464 0.460239281 0.847522009 0.701566003 0.918369266 1.00363671 1.065421553 0.658084953 1 18.94083421 -6.268386384 3.617433844 0.941403416 0.693160662 0.359444737 0.148278274 0.257873629 7.420192805 0.053665964 0.049777115 5.39E-07 6.268386384 -0.248242754 TKDQPDGSSLS(ph)PAQS(ph)PSQSQPPAASSLREPGLESK ddPTM_HeLa_A486_30min_R1 2 TKDQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 35 2 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 2 0 TKDQPDGSSLS(1)PAQS(0.997)PS(0.003)QSQPPAASSLREPGLESK;TKDQPDGSSLS(0.999)PAQS(0.994)PS(0.003)QS(0.003)QPPAASSLREPGLESK ; 260.88 1.02E-64 1466010000 583680 428000 156902 240100 382240 567500 687510 689430 298340 739430 TRUE FALSE FALSE 542767.0461 394083.7213 217658.6564 558964.934 334295.895 497487.6199 515487.7263 532461.8392 324200.3514 554271.9151 0.979243276 0.710993486 0.392692919 1.008466997 0.603126166 0.897551556 0.930026783 0.960650945 0.584912103 1 19.08023438 -6.296623741 24.47839206 0.875631401 0.733095614 0.107644528 0.195019378 1106.582548 769865.6135 0.067683342 0.059693982 5.05E-07 6.296623741 -0.142535787 TKDQPDGSSLS(ph)PAQSPSQSQPPAASSLR ddPTM_HeLa_A486_30min_R1 1 TKDQPDGSSLSPAQSPSQSQPPAASSLR 28 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TKDQPDGSS(0.001)LS(0.999)PAQSPSQSQPPAASSLR 138.28 5.45E-19 0 42646 39185 18629 13282 29434 43084 46293 33940 30280 50706 TRUE FALSE FALSE 39656.73562 36079.83789 25842.6477 30921.16724 25742.11326 37768.73413 34710.00176 26212.6029 32904.69478 38008.88756 1.043354283 0.949247405 0.679910657 0.813524658 0.677265632 0.993681651 0.913207515 0.689644043 0.865710545 1 15.21404918 -4.534115961 23.22763809 0.820510459 1.019827662 0.268379868 0.114392419 93.74897392 193782.3864 0.028800267 0.076399458 2.92E-05 4.534115961 0.199317203 TKDQPDGSSLS(ph)PAQSPSQSQPPAASSLREPGLESK ddPTM_HeLa_A485_30min_R1 1 TKDQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 35 2 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TKDQPDGSSLS(1)PAQSPSQSQPPAASSLREPGLESK 236.08 2.26E-51 736050000 127670 106340 70763 142850 108080 138580 230580 219110 91071 242130 TRUE FALSE FALSE 156069.751 118775.538 96941.17839 150653.5338 97319.17571 145835.8345 181314.6993 165372.9289 109348.1143 181771.4471 0.858604327 0.653433418 0.533313565 0.828807473 0.535393084 0.802303315 0.997487242 0.909784961 0.601569257 1 17.47176607 -6.513234331 24.37617813 0.874007149 0.679095309 0.295992985 0.142766378 431.2242741 1089922.405 0.051482147 0.042286429 3.07E-07 6.513234331 -0.19491184 TKDS(ph)GSISLQETR ddPTM_HeLa_A486_30min_R1 1 TKDSGSISLQETR 13 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 T(0.007)KDS(0.454)GS(0.454)IS(0.085)LQETR 43.454 0.036036 101250000 141190 139030 88975 57398 153690 130680 177060 168930 107650 161520 TRUE FALSE FALSE 131293.3101 128012.7565 123428.5028 133625.4447 134412.7671 114558.0303 132757.7153 130468.3267 116981.1887 121074.3407 1.084402437 1.057307071 1.019443939 1.103664443 1.110167244 0.946179262 1.096497528 1.077588579 0.966193068 1 16.88553362 TKDSGS(ph)ISLQETR ddPTM_HeLa_A485_30min_R1 1 TKDSGSISLQETR 13 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 T(0.016)KDS(0.326)GS(0.655)IS(0.003)LQETR 87.676 0.00087995 764760000 358060 336410 222660 380190 440950 313430 495820 500990 254070 459480 TRUE FALSE FALSE 437709.2117 375750.2231 305031.1997 400958.817 397047.4697 329840.7101 389884.0065 378121.417 305059.5185 344940.0921 1.2689427 1.089320238 0.88430196 1.162401316 1.151062109 0.956226074 1.130294841 1.096194457 0.884384058 1 18.3959863 -4.301777012 4.160185634 1.043108268 1.279727935 0.336050378 0.098312249 0.230738054 8.146206006 0.024449042 0.147168326 4.99E-05 4.301777012 0.236619666 TKDSGS(ph)ISLQETR ddPTM_HeLa_A486_30min_R1 3 TKDSGSISLQETR 13 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 TKDS(0.061)GS(0.934)IS(0.005)LQETR;TKDS(0.024)GS(0.915)IS(0.061)LQETR;T(0.022)KDS(0.249)GS(0.724)IS(0.005)LQETR ;; 116.29 8.90E-05 1869900000 1255740 1398480 876319 665463 1428420 1359400 1852960 1517990 921630 1424550 TRUE FALSE FALSE 1167719.111 1287659.352 1215653.185 1549231.495 1249254.244 1191691.049 1389329.809 1172376.814 1001517.63 1067833.408 1.09354053 1.205861647 1.138429625 1.450817593 1.169896198 1.115989667 1.301073556 1.097902356 0.937896888 1 20.02625516 -7.542591907 4.338782462 0.975064774 1.211794937 0.488952159 0.098926546 0.173333576 7.829017271 0.070221745 0.026065918 2.87E-08 7.542591907 0.236730163 TKECS(ph)VEK ddPTM_HeLa_A485_30min_R1 3 TKECSVEK 8 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 T(0.021)KECS(0.979)VEK;TKECS(1)VEK;TKECS(1)VEK ;; 95.094 0.001496 1734310000 4276510 1746140 720220 8167200 1170340 3151990 2801850 3205520 1892570 7527400 TRUE FALSE FALSE 5227804.896 1950335.884 986659.3489 8613353.456 1053816.84 3317023.322 2203211.858 2419361.194 2272391.439 5650957.712 0.925118389 0.345133689 0.174600377 1.524228971 0.186484645 0.586984276 0.389882914 0.42813295 0.402125012 1 22.43006396 -10.27404246 5.240059954 1.000071471 0.544809456 0.109546315 0.383271773 0.000310201 4.30E-05 0.35971584 0.087230276 5.32E-11 10.27404246 -0.455262016 TKECS(ph)VEK ddPTM_HeLa_A486_30min_R1 1 TKECSVEK 8 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 TKECS(1)VEK 86.772 0.0021905 321730000 582260 244380 239890 485610 161990 1533000 551840 498240 676960 1269700 TRUE FALSE FALSE 541446.5808 225014.4388 332781.8325 1130524.621 141671.7037 1343874.046 413763.7952 384801.6285 735639.4379 951758.8556 0.56889051 0.23641959 0.349649316 1.187826743 0.14885252 1.411990063 0.434735955 0.404305803 0.772926286 1 19.86023656 TKECS(ph)VEKGTGDSLR ddPTM_HeLa_A485_30min_R1 3 TKECSVEKGTGDSLR 15 2 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 T(0.001)KECS(0.999)VEKGTGDSLR;T(0.008)KECS(0.992)VEKGTGDSLR;T(0.002)KECS(0.998)VEKGTGDSLR ;; 132.83 1.03E-05 2550840000 1638410 1755970 997600 2085110 2971530 2710720 4883700 6369000 1666520 3439720 TRUE FALSE FALSE 2002868.652 1961315.417 1366653.754 2199014.28 2675674.04 2852649.108 3840257.599 4806992.764 2000975.278 2582261.107 0.775625922 0.75953412 0.529246926 0.851584789 1.036174859 1.104709783 1.487168586 1.861544036 0.774892699 1 21.30020346 -6.022102621 1.551754924 1.334039807 0.698903355 0.423371069 0.283220548 0.334988977 1.640955724 0.113341861 0.123925468 9.50E-07 6.022102621 -0.635136452 TKECS(ph)VEKGTGDSLR ddPTM_HeLa_A486_30min_R1 3 TKECSVEKGTGDSLR 15 2 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 T(0.011)KECS(0.988)VEKGT(0.001)GDSLR;T(0.002)KECS(0.996)VEKGT(0.002)GDSLR;T(0.002)KECS(0.998)VEKGTGDSLR ;; 107.45 0.0001248 2577410000 3266600 2305120 1198110 2324460 3212800 3277880 5412700 5541000 1824130 5549100 TRUE FALSE FALSE 3037628.209 2122453.896 1662050.278 5411460.352 2809820.666 2873488.493 4058385.21 4279435.259 1982247.057 4159569.241 0.730274707 0.5102581 0.399572692 1.300966527 0.675507607 0.690813958 0.975674397 1.028816931 0.476551042 1 21.9880027 -5.21123361 24.99995845 0.867326296 0.543057429 0.306388173 0.228218202 460.4726085 229291.4517 0.060533859 0.104847535 6.15E-06 5.21123361 -0.324268867 TKETDS(ph)PSTPGKDQR ddPTM_HeLa_A486_30min_R1 1 TKETDSPSTPGKDQR 15 2 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 T(0.006)KET(0.032)DS(0.932)PS(0.026)T(0.003)PGKDQR 80.609 0.0019072 43710000 92439 62818 28791 53916 68434 80566 128510 109900 58393 155960 TRUE FALSE FALSE 85959.50346 57840.0729 39939.64625 125519.1728 59850.3696 70626.58606 96355.43876 84878.1691 63454.55226 116906.6009 0.735283575 0.494754552 0.341637221 1.073670536 0.511950302 0.6041283 0.824208711 0.726034017 0.542779893 1 16.83499687 -14 0.190838044 2.471922216 0.589889116 0.219421366 0.194507974 214.1459264 2.096515933 120.2584483 0.524833614 1.00E-14 14 -1.8820331 TKETDSPS(ph)TPGKDQR ddPTM_HeLa_A485_30min_R1 1 TKETDSPSTPGKDQR 15 2 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 TKETDS(0.063)PS(0.567)T(0.37)PGKDQR 104.44 0.00014642 360100000 373020 295430 170560 537800 441660 438540 745450 721080 281310 809130 TRUE FALSE FALSE 455997.0121 329977.9686 233657.2416 567178.6522 397686.7796 461501.2763 586178.5177 544233.9994 337766.3367 607428.7819 0.750700371 0.543237295 0.384666069 0.933736874 0.654705196 0.759761951 0.96501604 0.89596347 0.556059157 1 19.21235574 -5.268973185 24.98898358 0.815465613 0.557904847 0.3776779 0.155087638 605.2512436 2007565.88 0.043364488 0.065764085 5.38E-06 5.268973185 -0.257560765 TKEVYELLDS(ph)PGK ddPTM_HeLa_A485_30min_R1 5 TKEVYELLDSPGK 13 1 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK ;;;; 204.05 7.03E-22 3238550000 7854310 4824100 3046290 13398330 7901380 5590710 10301360 8275180 4912410 16660070 TRUE FALSE FALSE 9601474.162 5388236.531 4173239.438 14130246.84 7114690.864 5883430.931 8100390.282 6245679.13 5898285.628 12507021.15 0.767686729 0.430816936 0.333671734 1.129785156 0.568855747 0.470410249 0.647667433 0.499373836 0.471597957 1 23.57623488 -10.17623247 4.410361263 1.000089718 0.589417012 0.248786749 0.213144328 133948719 23.56192244 129990.4266 0.053186597 6.66E-11 10.17623247 -0.410672706 TKEVYELLDS(ph)PGK ddPTM_HeLa_A486_30min_R1 6 TKEVYELLDSPGK 13 1 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK ;;;;; 227.4 5.61E-28 6816410000 12473730 9923780 3750780 6980390 7406190 13437860 17576750 15074620 8051140 21808900 TRUE FALSE FALSE 11599385.94 9137383.531 5203182.465 16250700.69 6477236.59 11780033.46 13178861.24 11642458.1 8749019.298 16347809.49 0.709537626 0.558936262 0.318280102 0.994059828 0.396214343 0.720587885 0.806154565 0.712172362 0.535179915 1 23.962594 -14 0.185255091 2.487317089 0.571500079 0.24656879 0.187631387 191.0158606 1.854863077 104.9176154 0.531640326 1.00E-14 14 -1.91581701 TKEVYELLDS(ph)PGKVLLQSK ddPTM_HeLa_A485_30min_R1 2 TKEVYELLDSPGKVLLQSK 19 2 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 TKEVYELLDS(1)PGKVLLQSK;TKEVYELLDS(1)PGKVLLQSK ; 238.23 6.94E-46 2980200000 960405 907105 387692 1387730 1544800 1319316 2694340 3267200 775289 2166550 TRUE FALSE FALSE 1174043.779 1013183.039 531115.404 1463538.176 1390994.288 1388393.346 2118672.248 2465914.077 930882.3909 1626468.957 0.721835959 0.622934139 0.32654506 0.899825459 0.855223385 0.853624251 1.302620772 1.516115058 0.572333328 1 20.63331186 -5.920693892 1.275521124 1.113213252 0.579638123 0.367894739 0.262458258 0.443462956 1.511466399 0.11216133 0.137270054 1.20E-06 5.920693892 -0.533575129 TKEVYELLDS(ph)PGKVLLQSK ddPTM_HeLa_A486_30min_R1 2 TKEVYELLDSPGKVLLQSK 19 2 P22234;P22234-2;E9PBS1 P22234 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 TKEVYELLDS(1)PGKVLLQSK;TKEVYELLDS(1)PGKVLLQSK ; 275.92 8.59E-70 3291400000 3959000 2237100 915830 2902600 2806500 3354300 6095300 5745800 1707010 6541200 TRUE FALSE FALSE 3681494.544 2059824.049 1270463.903 6757399.489 2454482.6 2940480.57 4570191.47 4437606.77 1854975.001 4903240.944 0.750828806 0.420094397 0.25910697 1.378149589 0.500583722 0.599701423 0.932075646 0.905035429 0.378316102 1 22.22530423 -9.157539125 0.051834486 1.694584351 9.15E-18 0.072774245 0.315404099 364.3974991 5.339839186 104.770201 69.66684993 6.96E-10 9.157539125 -1.694584351 TKEYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_HeLa_A485_30min_R1 5 TKEYVSNDAAQSDDEEKLQSQPTDTDGGR 29 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR ;;;; 383.48 6.21E-188 9147570000 3271300 2308650 1369586 5764560 4002077 3313008 6644760 6644250 2556323 7839920 TRUE FALSE FALSE 3998989.399 2578626.535 1876252.855 6079463.316 3603616.162 3486471.976 5225052.743 5014737.27 3069353.578 5885572.227 0.679456346 0.438126734 0.318788519 1.032943456 0.61227966 0.592376041 0.887773107 0.852039033 0.5215047 1 22.48875126 -5.417851108 0.092117639 1.253370795 3.66E-12 0.239627902 0.19965928 64.25485598 1.502093927 6.3519618 14.49524553 3.82E-06 5.417851108 -1.253370795 TKEYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_HeLa_A486_30min_R1 6 TKEYVSNDAAQSDDEEKLQSQPTDTDGGR 29 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR;TKEYVSNDAAQS(1)DDEEKLQSQPTDTDGGR ;;;;; 418.62 1.11E-206 12336352000 4461306 3271801 1082559 2937813 2881101 4323783 6654225 5915174 2693357 8573360 TRUE FALSE FALSE 4148591.488 3012531.573 1501754.837 6839377.133 2519726.447 3790358.614 4989267.524 4568418.008 2926819.353 6426534.853 0.645540961 0.468764527 0.233680338 1.064240262 0.392081659 0.589798188 0.776354231 0.710868005 0.45542729 1 22.61560962 -14 0.176431519 2.583896477 0.509983644 0.232527461 0.219065164 198.836224 1.900501585 110.7798475 0.711427464 1.00E-14 14 -2.073912833 TKFAS(ph)DDEHDEHDENGATGPVK ddPTM_HeLa_A485_30min_R1 1 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 0 T(0.194)KFAS(0.806)DDEHDEHDENGATGPVK 330.48 8.72E-115 3123900000 2858500 1780600 1088500 4361300 2756400 2253400 4053100 3228600 2045600 5699000 TRUE FALSE FALSE 3494363.463 1988825.681 1491181.446 4599546.776 2481963.138 2371384.54 3187122.074 2436780.788 2456133.157 4278344.182 0.816756043 0.464858739 0.348541721 1.07507638 0.580122363 0.554276243 0.744942889 0.569561654 0.574084985 1 22.02862112 -10.18096291 4.649241119 1.000054587 0.633001266 0.244389273 0.191678328 0.000112252 1.98E-05 0.183583585 0.044518648 6.59E-11 10.18096291 -0.367053321 TKFAS(ph)DDEHDEHDENGATGPVK ddPTM_HeLa_A486_30min_R1 1 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 0 T(0.142)KFAS(0.858)DDEHDEHDENGATGPVK 291.02 1.93E-87 5196200000 2560800 2094200 874910 1229500 1902900 2877600 3791500 3245500 1791200 3824100 TRUE FALSE FALSE 2381301.144 1928247.965 1213698.583 2862338.135 1664220.538 2522590.969 2842826.598 2506570.499 1946462.658 2866520.469 0.830728812 0.672678945 0.42340482 0.998540972 0.580571657 0.880018474 0.991734274 0.874429653 0.679033232 1 21.45086915 -6.297687358 19.71781085 0.883864038 0.700689143 0.241840153 0.162760074 73.68318003 40080.02457 0.05672828 0.050037841 5.04E-07 6.297687358 -0.183174895 TKFAS(ph)DDEHDEHDENGATGPVKR ddPTM_HeLa_A485_30min_R1 8 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 0 TKFAS(1)DDEHDEHDENGATGPVKR;T(0.044)KFAS(0.956)DDEHDEHDENGATGPVKR;T(0.205)KFAS(0.795)DDEHDEHDENGATGPVKR;T(0.001)KFAS(0.999)DDEHDEHDENGATGPVKR;T(0.002)KFAS(0.998)DDEHDEHDENGATGPVKR;TKFAS(1)DDEHDEHDENGATGPVKR;T(0.001)KFAS(0.999)DDEHDEHDENGATGPVKR;T(0.251)KFAS(0.749)DDEHDEHDENGATGPVKR ;;;;;;; 281.55 1.96E-75 82722130000 7402520 7783850 4064750 8934020 11015000 10972540 19789870 24056310 6447260 12667910 TRUE FALSE FALSE 9049185.036 8694103.547 5568470.173 9422062.89 9918307.924 11547045.23 15561602.61 18156462.25 7741165.944 9510033.173 0.951540849 0.914203283 0.585536356 0.99074974 1.042930949 1.214196104 1.63633526 1.909190212 0.813999889 1 23.18101894 -6.14887804 1.863539977 1.408616631 0.842963573 0.321503482 0.306366893 0.358275553 2.461598563 0.120600261 0.119465528 7.10E-07 6.14887804 -0.565653058 TKFAS(ph)DDEHDEHDENGATGPVKR ddPTM_HeLa_A486_30min_R1 7 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 0 T(0.052)KFAS(0.948)DDEHDEHDENGATGPVKR;TKFAS(1)DDEHDEHDENGATGPVKR;T(0.001)KFAS(0.999)DDEHDEHDENGATGPVKR;T(0.02)KFAS(0.98)DDEHDEHDENGATGPVKR;T(0.077)KFAS(0.923)DDEHDEHDENGATGPVKR;T(0.402)KFAS(0.598)DDEHDEHDENGATGPVKR;T(0.005)KFAS(0.995)DDEHDEHDENGATGPVKR ;;;;;; 237.32 4.79E-49 88076400000 7623970 4329210 2443190 3885310 6125160 6041980 9570350 9565860 3621840 10187590 TRUE FALSE FALSE 7089569.073 3986147.633 3389258.599 9045198.033 5356885.318 5296581.938 7175747.205 7387922.499 3935784.007 7636551.154 0.928373153 0.521982706 0.443820585 1.184461133 0.701479661 0.693582984 0.939658108 0.967442285 0.515387631 1 22.8644898 -5.2301806 24.99947696 0.846175084 0.62045126 0.190412989 0.212343192 1142.124354 913422.5354 0.056466863 0.097790822 5.89E-06 5.2301806 -0.225723824 TKFICVTPTTCSNTIDLPMS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TKFICVTPTTCSNTIDLPMSPR 22 1 P40763-2;G8JLH9;P40763 P40763-2 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription 1 0 TKFICVTPTTCSNTIDLPMS(1)PR;TKFICVTPTTCSNTIDLPMS(1)PR ; 204.88 2.99E-27 1629250000 571310 1083780 660560 404940 1010640 1002690 1394380 1880510 623310 606150 TRUE FALSE FALSE 698395.9385 1210518.643 904928.6322 427060.8468 910017.133 1055189.298 1096459.322 1419311.974 748402.5997 455047.9604 1.534774352 2.66020013 1.988644519 0.938496343 1.999826858 2.318852934 2.409546724 3.119038206 1.644667518 1 18.79565908 -6.004074716 24.93080311 2.240198999 1.809594728 0.027723834 0.654973416 454.3210493 2779751.556 0.205273473 0.227473688 9.91E-07 6.004074716 -0.430604271 TKFICVTPTTCSNTIDLPMS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TKFICVTPTTCSNTIDLPMSPR 22 1 P40763-2;G8JLH9;P40763 P40763-2 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription 1 0 TKFICVTPTTCSNTIDLPMS(1)PR;TKFICVTPTTCSNTIDLPMS(1)PR ; 253.47 2.27E-59 917420000 1176460 640070 502990 343150 945360 543870 902690 965710 480750 1221790 TRUE FALSE FALSE 1093996.229 589348.5221 697761.1985 798870.5418 826784.1337 476772.8491 676827.4143 745838.9143 522421.7971 915845.8315 1.194520073 0.643501888 0.761876262 0.872276222 0.902754705 0.520581994 0.739018939 0.814371686 0.570425479 1 19.80474524 -4.252561279 24.68147848 0.752665666 1.194520345 0.459527798 0.141801779 866.4336726 2408659.986 0.034288307 0.39763292 5.59E-05 4.252561279 0.441854679 TKFVS(ph)FTSR ddPTM_HeLa_A485_30min_R1 1 TKFVSFTSR 9 1 Q8N5V2-3;Q8N5V2 Q8N5V2-3 NGEF Ephexin-1 1 0 T(0.002)KFVS(0.933)FT(0.065)SR 60.161 0.015246 313370000 242200 245890 185220 233260 320660 228000 467780 674490 304110 362130 TRUE FALSE FALSE 296076.5544 274644.6965 253740.5856 246002.4032 288733.9645 239937.7274 367834.9816 509070.2699 365142.0875 271857.6555 1.089086691 1.010251839 0.93335825 0.904894154 1.06207774 0.882585878 1.353042573 1.872561834 1.343137043 1 18.05249193 -6.876244526 5.08171997 1.483461092 0.981182644 0.465719898 0.210884162 0.152627555 6.149467524 0.085696111 0.057165747 1.33E-07 6.876244526 -0.502278448 TKFVS(ph)FTSR ddPTM_HeLa_A486_30min_R1 1 TKFVSFTSR 9 1 Q8N5V2-3;Q8N5V2 Q8N5V2-3 NGEF Ephexin-1 1 0 TKFVS(0.939)FT(0.061)SR 81.709 0.0016301 0 318690 237620 115220 154140 209810 264640 352110 431460 156170 344390 TRUE FALSE FALSE 296351.4767 218790.1258 159836.2697 358845.7098 183493.6734 231991.4075 264008.3538 333225.9767 169706.9413 258152.5024 1.147970575 0.847522777 0.619154446 1.390053191 0.710795641 0.898660309 1.02268369 1.290810562 0.657390263 1 17.97786406 -6.771159975 23.88620299 1.016955374 0.927727138 0.008166602 0.248276175 567.7901702 1395194.365 0.100206864 0.068602778 1.69E-07 6.771159975 -0.089228237 TKKDDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 2 TKKDDSHSAEDSEDEKEDHK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 TKKDDS(0.004)HS(0.996)AEDS(1)EDEKEDHK;TKKDDS(0.093)HS(0.907)AEDS(1)EDEKEDHK ; 212.86 2.50E-27 1213570000 875440 431470 202928 3244200 784340 786350 2436490 1672790 444870 4585700 TRUE FALSE FALSE 1070178.608 481926.6632 277999.5117 3421422.431 706248.3556 827522.0701 1915914.007 1262535.63 534151.3284 3442569.384 0.310866242 0.139990399 0.080753496 0.993857218 0.205151524 0.240379199 0.556536062 0.366742247 0.155160657 1 21.7150543 -10.44494041 3.245632065 1.010281188 0.345050626 0.378371692 0.254126725 289257049.1 375563328.4 27322842.69 0.062974412 3.59E-11 10.44494041 -0.665230563 TKKDDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_A486_30min_R1 2 TKKDDSHSAEDSEDEKEDHK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 TKKDDS(0.014)HS(0.986)AEDS(1)EDEKEDHK;TKKDDS(0.011)HS(0.989)AEDS(1)EDEKEDHK ; 198.67 1.63E-26 1695290000 808460 423350 94570 2206470 342560 1062230 2227510 1870340 321350 3956400 TRUE FALSE FALSE 751791.1289 389802.2042 131190.0367 5136773.669 299592.9306 931182.8626 1670163.438 1444504.411 349204.8767 2965691.688 0.25349605 0.131437198 0.044235899 1.732065976 0.101019581 0.313985053 0.56316152 0.487071673 0.117748206 1 21.49993719 -11.39680223 2.13380937 5.008475351 0.429577671 0.121630345 0.46952706 26585256.28 2336881.669 515069477.1 0.117437381 4.01E-12 11.39680223 -4.578897679 TKKDDSHSAEDS(ph)EDEKEDHK ddPTM_HeLa_A485_30min_R1 1 TKKDDSHSAEDSEDEKEDHK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TKKDDSHSAEDS(1)EDEKEDHK 118.57 4.00E-06 186830000 37332 35896 9869.1 111210 40201 39760 84637 81390 20347 117240 TRUE FALSE FALSE 45636.37461 40093.72495 13520.09078 117285.1207 36198.44729 41841.77212 66553.61353 61428.97489 24430.45627 88014.22564 0.518511346 0.455536871 0.153612563 1.332570046 0.411279506 0.475397833 0.756168824 0.697943707 0.27757395 1 16.4254491 -11.16805626 2.446320606 2.098063404 0.574067456 0.152891791 0.306903039 18050284.41 4480825.207 109853329.8 0.075279008 6.79E-12 11.16805626 -1.523995948 TKPIWTR ddPTM_HeLa_A485_30min_R1 4 TKPIWTR 7 1 P08238;P07900;P07900-2;Q14568;Q58FG0;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AA5P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 2 0 0 ;;; ;;; 115.7 0.0042701 3397799000 1870528 2539080 1765353 2310299 3249030 2598390 3613190 3659420 2140740 3315470 FALSE FALSE TRUE 2286620.5 2836003.319 2418430.537 2436504.784 2925545.165 2734437.683 2841202.439 2761941.507 2570366.882 2488984.346 0.918696216 1.139421919 0.971653575 0.978915271 1.175397174 1.098615862 1.141510771 1.109666082 1.032697086 1 21.24712573 -5.743523693 24.9998324 1.101172698 1.00979545 0.278405528 0.070463064 317.8428588 443521.2941 0.020097105 0.025890822 1.80E-06 5.743523693 -0.091377248 TKPIWTR ddPTM_HeLa_A486_30min_R1 3 TKPIWTR 7 1 P08238;P07900;P07900-2;Q14568;Q58FG0;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AA5P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 2 0 0 ;; ;; 140.35 0.0019495 2704469000 2682506 2094634 1408413 925485 3225440 2212501 2658638 2750354 1823082 2817787 FALSE FALSE TRUE 2494476.182 1928647.573 1953788.232 2154575.851 2820875.239 1939545.122 1993418.652 2124158.434 1981108.216 2112194.794 1.180987752 0.913101187 0.92500381 1.020064938 1.335518507 0.918260535 0.943766483 1.00566408 0.937938215 1 21.01031146 TKPLT(ph)PSIGAK ddPTM_HeLa_A485_30min_R1 2 TKPLTPSIGAK 11 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 T(0.01)KPLT(0.977)PS(0.012)IGAK;T(0.001)KPLT(0.891)PS(0.108)IGAK ; 96.673 0.002206 914530000 2143270 1771570 1094180 2939100 2319700 2280790 3651500 3557800 1551260 4227400 TRUE FALSE FALSE 2620033.017 1978739.701 1498962.715 3099655.591 2088742.523 2400208.638 2871327.195 2685243.972 1862583.653 3173586.98 0.825574668 0.62350259 0.472324447 0.976704156 0.658164574 0.756307816 0.904757681 0.846122696 0.586901719 1 21.59768295 -5.260627521 24.99998 0.806342858 0.638770781 0.23491018 0.146028052 114.1239497 3514217.602 0.039601032 0.063738523 5.49E-06 5.260627521 -0.167572077 TKPLT(ph)PSIGAK ddPTM_HeLa_A486_30min_R1 1 TKPLTPSIGAK 11 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 T(0.001)KPLT(0.935)PS(0.064)IGAK 101.3 0.0014363 693830000 1557000 1133900 435260 634690 982970 1443400 1801000 1579100 912520 2194100 TRUE FALSE FALSE 1447862.34 1044045.634 603804.3287 1477590.395 859676.7368 1265327.983 1350370.751 1219573.402 991617.9683 1644683.079 0.880329079 0.634800496 0.367125032 0.898404328 0.522700542 0.769344562 0.821052255 0.741524867 0.602923433 1 20.64937818 -6.46487874 24.87916396 0.773459169 0.655122587 0.116491157 0.171605138 622.100472 266850.3066 0.059176465 0.0521886 3.43E-07 6.46487874 -0.118336582 TKPPRPDS(ph)PATTPNISVK ddPTM_HeLa_A485_30min_R1 2 TKPPRPDSPATTPNISVK 18 2 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 T(0.286)KPPRPDS(0.714)PAT(0.001)TPNISVK;TKPPRPDS(0.99)PAT(0.008)T(0.002)PNISVK ; 112.47 4.09E-05 2148410000 1121580 1017530 683080 1320340 1315400 1399530 1965340 2206360 950660 1854950 TRUE FALSE FALSE 1371071.602 1136521.282 935779.7173 1392466.831 1184434.157 1472807.227 1545429.054 1665246.751 1141448.742 1392545.103 0.984579673 0.816146838 0.671992394 0.999943792 0.850553533 1.057637001 1.109787432 1.19582967 0.819685294 1 20.40929262 -6.262166444 24.38074957 1.053402215 0.858762866 0.320291433 0.123889812 52.27606838 1752950.244 0.042305093 0.039540901 5.47E-07 6.262166444 -0.194639349 TKPPRPDS(ph)PATTPNISVK ddPTM_HeLa_A486_30min_R1 2 TKPPRPDSPATTPNISVK 18 2 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 T(0.13)KPPRPDS(0.669)PAT(0.175)T(0.026)PNISVK;T(0.067)KPPRPDS(0.933)PATTPNISVK ; 126.97 4.93E-06 2691100000 6654500 5024500 2277200 2457700 4884600 5509200 7283800 6736900 3728700 9016100 TRUE FALSE FALSE 6188053.914 4626340.321 3158992.826 5721649.805 4271927.921 4829530.917 5461316.2 5203054.935 4051906.718 6758409.875 0.915607965 0.684530889 0.467416579 0.846597041 0.632090684 0.714595742 0.808077092 0.769863774 0.599535511 1 22.68825242 -10.96082055 2.707237105 1.224893278 0.712885813 0.324420842 0.123175098 77624524.37 49823721.6 109832219.6 0.030696238 1.09E-11 10.96082055 -0.512007465 TKPTQAAGPSS(ph)PQKPPT(ph)PEETK ddPTM_HeLa_A485_30min_R1 5 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 2 0 TKPTQAAGPS(0.009)S(0.99)PQKPPT(0.963)PEET(0.037)K;TKPTQAAGPS(0.004)S(0.996)PQKPPT(0.977)PEET(0.023)K;TKPTQAAGPS(0.349)S(0.65)PQKPPT(1)PEETK;TKPTQAAGPS(0.018)S(0.982)PQKPPT(1)PEETK;TKPTQAAGPS(0.105)S(0.895)PQKPPT(0.999)PEET(0.001)K ;;;; 169.5 2.80E-13 9248280000 3067240 1856410 790894 7149660 2396070 2329800 5810270 4193900 1436570 9342700 TRUE FALSE FALSE 3749536.956 2073501.001 1083478.602 7540227.822 2157508.858 2451784.725 4568858.349 3165339.449 1724876.422 7013736.83 0.534599037 0.295634275 0.154479506 1.07506569 0.307611892 0.349568965 0.651415709 0.451305706 0.245928307 1 22.74175187 -11.0583277 2.481612742 1.760113037 0.455350264 0.303121867 0.249337499 33657084.98 10513002.01 145115608.2 0.064567639 8.74E-12 11.0583277 -1.304762773 TKPTQAAGPSS(ph)PQKPPT(ph)PEETK ddPTM_HeLa_A486_30min_R1 3 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 2 0 T(0.002)KPT(0.016)QAAGPS(0.147)S(0.835)PQKPPT(1)PEETK;TKPTQAAGPS(0.008)S(0.992)PQKPPT(1)PEETK;TKPTQAAGPS(0.035)S(0.965)PQKPPT(0.999)PEET(0.001)K ;; 137.44 7.53E-07 3818280000 3485690 2139860 427527 2908350 1348790 3643770 5259260 4378080 1710060 9637000 TRUE FALSE FALSE 3241361.131 1970289.7 593076.904 6770785.78 1179612.181 3194238.705 3943337.521 3381286.757 1858289.378 7223832.474 0.448703807 0.272748532 0.082100036 0.937284441 0.16329451 0.442180618 0.545878872 0.468073806 0.257244252 1 22.78433301 -11.17476649 2.369466924 2.54466368 0.404826101 0.385759185 0.22637208 20226863.35 4579597.274 167622078.5 0.05456683 6.69E-12 11.17476649 -2.139837579 TKPTQAAGPSS(ph)PQKPPTPEETK ddPTM_HeLa_A485_30min_R1 1 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 TKPTQAAGPS(0.043)S(0.956)PQKPPT(0.001)PEETK 107.75 7.49E-05 2356100000 230900 139010 67042 414080 229500 225130 462850 431870 153050 549170 TRUE FALSE FALSE 282262.9084 155266.0103 91843.62565 436700.1419 206650.1742 236917.4587 363958.3164 325953.2054 183765.7311 412272.0257 0.684652101 0.376610589 0.222774333 1.059252422 0.501247141 0.57466295 0.88281109 0.79062654 0.445739026 1 18.65323705 -13.99999815 0.057728956 2.403338317 9.79E-09 0.206894377 0.234238351 673.7609991 2.843579513 136.6379682 24.29443492 1.00E-14 13.99999815 -2.403338307 TKPTQAAGPSS(ph)PQKPPTPEETK ddPTM_HeLa_A486_30min_R1 1 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 TKPTQAAGPS(0.018)S(0.981)PQKPPTPEETK 159.56 2.12E-11 2616000000 829980 536070 149010 495920 491510 889550 1185600 1107100 524610 1794900 TRUE FALSE FALSE 771802.688 493589.8609 206710.6626 1154526.822 429860.2327 779806.3653 888950.34 855037.4978 570083.6172 1345445.357 0.57364105 0.366859834 0.153637353 0.85810012 0.319492895 0.57958977 0.660710846 0.635505183 0.42371369 1 20.35965237 -13.99999998 0.155896508 2.790510106 0.368446115 0.388877744 0.18788621 136.0524513 1.234338765 75.36829588 0.843818071 1.00E-14 13.99999998 -2.422063991 TKPYIQVDIGGGQTK ddPTM_HeLa_A485_30min_R1 2 TKPYIQVDIGGGQTK 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 205.69 2.48E-16 156194000 405300 390850 251310 478890 494710 491110 698130 717500 371540 746710 FALSE FALSE TRUE 495457.5867 436556.5076 344280.0269 505050.5481 445454.9354 516823.7602 548968.8223 541532 446104.67 560568.9392 0.883847734 0.778773987 0.614161797 0.900960636 0.794647909 0.921962892 0.979306529 0.966039968 0.795806972 1 19.09653228 -6.061241545 1.606710753 0.935362398 0.773853963 0.368090852 0.089394515 0.411393541 2.143312592 0.036340283 0.038459759 8.68E-07 6.061241545 -0.161508435 TKPYIQVDIGGGQTK ddPTM_HeLa_A486_30min_R1 1 TKPYIQVDIGGGQTK 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 218.43 1.50E-22 62105000 300370 227220 117880 104800 222770 260810 324540 288080 225680 412710 FALSE FALSE TRUE 279315.6141 209214.2597 163526.2929 243979.6963 194828.1094 228633.9139 243336.6594 222490.4727 245242.1241 309364.7297 0.902868321 0.676270562 0.528587383 0.788647421 0.629768331 0.739043246 0.786568849 0.719184999 0.792728131 1 18.2389492 -8.726270428 0.581297386 1.013752186 0.702005391 0.439431191 0.094736353 2.444774555 1.220054398 0.17119391 0.041402966 1.88E-09 8.726270428 -0.311746795 TKQPQENTTHVEEVTEAGDS(ph)EGEQSYFVSTPDEHPGGHDR ddPTM_HeLa_A486_30min_R1 1 TKQPQENTTHVEEVTEAGDSEGEQSYFVSTPDEHPGGHDR 40 1 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 TKQPQENTTHVEEVTEAGDS(0.872)EGEQS(0.051)Y(0.046)FVS(0.016)T(0.016)PDEHPGGHDR 100.19 1.66E-05 311790000 205840 130380 90794 43417 166590 187200 198920 200830 130650 171970 TRUE FALSE FALSE 191411.679 120048.214 125951.8683 101076.9702 145694.7288 164105.1673 149148.112 155105.3931 141974.8472 128907.5927 1.484875134 0.931273414 0.977070984 0.784104086 1.130226124 1.273045008 1.157015727 1.203229305 1.101369161 1 16.97597772 -5.980233649 24.9988571 1.164860842 1.022165346 0.059441902 0.18042066 532.7064213 673719.9372 0.055867838 0.063341358 1.05E-06 5.980233649 -0.142695496 TKS(ph)DES(ph)GEEKNGDEDCQR ddPTM_HeLa_A485_30min_R1 2 TKSDESGEEKNGDEDCQR 18 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.124)KS(0.876)DES(1)GEEKNGDEDCQR;T(0.305)KS(0.695)DES(1)GEEKNGDEDCQR ; 164.31 3.01E-12 2523900000 2103470 1126930 619030 6855670 2002560 1347870 3732520 2512800 1075490 8520300 TRUE FALSE FALSE 2571379.645 1258714.661 848034.957 7230177.893 1803178.095 1418442.389 2935036.61 1896531.86 1291330.978 6396346.015 0.40200759 0.196786518 0.132581157 1.130360658 0.281907528 0.221758233 0.458861451 0.296502387 0.201885729 1 22.60881655 -10.18252773 4.22821751 1.000218023 0.373138579 0.326945558 0.271472796 752460776.1 1560314114 2246683.459 0.068822081 6.57E-11 10.18252773 -0.627079444 TKS(ph)DES(ph)GEEKNGDEDCQR ddPTM_HeLa_A486_30min_R1 3 TKSDESGEEKNGDEDCQR 18 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.365)KS(0.636)DES(0.999)GEEKNGDEDCQR;T(0.119)KS(0.881)DES(1)GEEKNGDEDCQR;T(0.409)KS(0.591)DES(1)GEEKNGDEDCQR ;; 115.88 8.94E-05 2812170000 2818080 2492200 692608 5403250 1547690 3621410 6728540 5107660 1703695 9860450 TRUE FALSE FALSE 2620547.145 2294708.996 960804.3663 12579039.07 1353564.289 3174637.254 5044988.125 3944757.317 1851372.654 7391329.139 0.354543424 0.310459587 0.129990743 1.701864283 0.183128672 0.429508306 0.682554927 0.53370067 0.25047899 1 22.81740239 -11.41200314 2.171868346 4.763244858 0.520585182 0.105047338 0.429097019 12120630.12 1259130.88 223795686 0.112075359 3.87E-12 11.41200314 -4.242659676 TKS(ph)LIAQDHR ddPTM_HeLa_A485_30min_R1 4 TKSLIAQDHR 10 1 E9PB39;H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 E9PB39 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 0 T(0.284)KS(0.716)LIAQDHR;T(0.154)KS(0.846)LIAQDHR;T(0.15)KS(0.85)LIAQDHR;T(0.122)KS(0.878)LIAQDHR ;;; 140.1 9.17E-06 1349470000 2022970 1841300 1510070 2829560 3107670 2397890 4226470 4416640 1974370 3857020 TRUE FALSE FALSE 2472972.697 2056624.018 2068707.732 2984131.698 2798259.463 2523439.813 3323450.157 3333452.115 2370607.949 2895535.897 0.854063906 0.710274053 0.714447275 1.030597376 0.966404687 0.871493189 1.147784132 1.151238401 0.818711297 1 21.46539895 -5.263337101 24.99482688 1.003983658 0.754662967 0.520144311 0.104807767 129.6022467 1706992.301 0.029827657 0.046883583 5.45E-06 5.263337101 -0.24932069 TKS(ph)LIAQDHR ddPTM_HeLa_A486_30min_R1 4 TKSLIAQDHR 10 1 E9PB39;H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 E9PB39 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 0 T(0.202)KS(0.798)LIAQDHR;T(0.171)KS(0.829)LIAQDHR;T(0.033)KS(0.967)LIAQDHR;T(0.016)KS(0.984)LIAQDHR ;;; 138.21 1.67E-05 1163530000 2616040 2752010 1625820 1526960 3065360 3767500 4916920 4942140 2640270 4502050 TRUE FALSE FALSE 2432669.105 2533930.705 2255381.045 3554840.048 2680873.965 3302704.155 3686654.61 3816922.608 2869130.729 3374707.377 0.720853346 0.750859385 0.668318996 1.053377271 0.794401904 0.978663862 1.092436825 1.131038097 0.850186523 1 21.68633098 -5.437330909 0.920049453 1.02001153 0.690398856 0.527605515 0.109021886 0.514591541 0.859629793 0.04777508 0.117399282 3.65E-06 5.437330909 -0.329612674 TKS(ph)PTDDEVTPSAVVR ddPTM_HeLa_A485_30min_R1 4 TKSPTDDEVTPSAVVR 16 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 T(0.082)KS(0.866)PT(0.053)DDEVTPSAVVR;T(0.048)KS(0.916)PT(0.036)DDEVTPSAVVR;T(0.281)KS(0.699)PT(0.021)DDEVTPSAVVR;T(0.197)KS(0.795)PT(0.008)DDEVTPSAVVR ;;; 205.78 1.22E-25 3107120000 1049210 970990 723750 1727750 1322120 1152780 1822080 1498320 938090 2426710 TRUE FALSE FALSE 1282603.145 1084538.834 991495.2428 1822132.608 1190485.091 1213137.778 1432777.723 1130854.671 1126356.058 1821775.857 0.704040039 0.595319578 0.54424656 1.000195826 0.653475062 0.66590946 0.786473109 0.620743033 0.618273677 1 20.79691404 -10.52598673 3.012945207 1.011551596 0.68918799 0.37271468 0.121556985 51417119.72 60713431.02 4903641.962 0.031238054 2.98E-11 10.52598673 -0.322363606 TKS(ph)PTDDEVTPSAVVR ddPTM_HeLa_A486_30min_R1 3 TKSPTDDEVTPSAVVR 16 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 T(0.002)KS(0.836)PT(0.162)DDEVTPSAVVR;T(0.152)KS(0.549)PT(0.298)DDEVTPSAVVR;T(0.13)KS(0.661)PT(0.21)DDEVTPSAVVR ;; 161.97 3.60E-12 2271950000 1235510 1077670 570130 490040 1043820 1294150 1581110 1496130 879130 1850710 TRUE FALSE FALSE 1148907.129 992271.5044 790899.6046 1140837.885 912894.3624 1134490.931 1185499.555 1155493.859 955333.6962 1387280.17 0.828172387 0.715263957 0.570108059 0.822355794 0.658046141 0.817780687 0.854549485 0.832920332 0.688637895 1 20.40382775 -6.369140042 6.642722275 0.830667432 0.716328089 0.267243233 0.098998282 0.37059039 19.91787675 0.03416573 0.030044471 4.27E-07 6.369140042 -0.114339343 TKS(ph)RS(ph)PS(ph)PAPEKK ddPTM_HeLa_A485_30min_R1 2 TKSRSPSPAPEKK 13 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 T(0.405)KS(0.607)RS(0.992)PS(0.997)PAPEKK;T(0.455)KS(0.551)RS(0.996)PS(0.998)PAPEKK ; 72.21 0.0071513 649670000 593430 315450 183875 1396910 511780 508920 1126920 988980 328720 1866180 TRUE FALSE FALSE 725436.4562 352339.1334 251898.0142 1473219.656 460825.3862 535566.2643 886144.3359 746431.1043 394691.0888 1400975.67 0.517808033 0.25149554 0.179801848 1.05156691 0.328931755 0.382280917 0.632519432 0.532793767 0.281725869 1 20.41800047 -10.28242542 4.12116116 1.000575286 0.465769482 0.315221917 0.237786081 92844024.09 38609711.64 481751.3938 0.05741389 5.22E-11 10.28242542 -0.534805804 TKS(ph)RS(ph)PS(ph)PAPEKK ddPTM_HeLa_A486_30min_R1 1 TKSRSPSPAPEKK 13 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 T(0.435)KS(0.586)RS(0.979)PS(1)PAPEKK 81.317 0.0033501 214130000 647740 330700 143550 647820 348460 842850 1064900 812790 358280 1518200 TRUE FALSE FALSE 602336.7709 304494.1276 199136.4044 1508157.699 304752.8975 738867.7365 798450.7566 627735.4601 389335.9989 1138032.838 0.529278902 0.267561811 0.174983004 1.325232145 0.267789195 0.649249926 0.701606078 0.551596965 0.34211315 1 20.11811076 -11.58157536 2.205426468 9.816860242 0.54018391 0.166448588 0.312350427 11442514.39 445724.5643 509379573.7 0.079819775 2.62E-12 11.58157536 -9.276676333 TKSDES(ph)GEEKNGDEDCQR ddPTM_HeLa_A486_30min_R1 1 TKSDESGEEKNGDEDCQR 18 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YBM7;E5RHK4 Q6PKG0 LARP1 La-related protein 1 1 0 TKSDES(1)GEEKNGDEDCQR 220.52 9.85E-35 679000000 154850 141880 60792 185240 123850 211540 294860 259310 104980 366130 TRUE FALSE FALSE 143995.8146 130636.9121 84332.29047 431248.0815 108315.5781 185442.3456 221082.9093 200270.7737 114079.7509 274448.6649 0.524673037 0.475997623 0.307278924 1.571325121 0.394666078 0.675690463 0.805552869 0.729720342 0.415668814 1 18.0661768 TKSPPASSAASADQHSQS(ph)GSSSDNTER ddPTM_HeLa_A486_30min_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57;Q8IY57-5;Q8IY57-3 Q8IY57 YAF2 YY1-associated factor 2 1 0 TKSPPASSAASADQHS(0.001)QS(0.727)GS(0.168)S(0.051)S(0.051)DNT(0.002)ER 76.423 0.0046741 28999000 15227 12937 8934.3 1456.5 14920 11927 15761 14389 12063 14501 TRUE FALSE FALSE 14159.66593 11911.825 12393.90023 3390.805607 13048.59448 10455.568 11817.4311 11112.93881 13108.63055 10869.85521 1.302654511 1.095858663 1.140208401 0.311945793 1.200438664 0.961886594 1.087174655 1.022363094 1.205961836 1 13.4080451 -8.685306904 13.92806642 1.000005928 1.023686838 0 0.259904104 0 0 0.251823138 0.061076082 2.06E-09 8.685306904 0.023680911 TKSPPASSAASADQHSQSGS(ph)SSDNTER ddPTM_HeLa_A485_30min_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57;Q8IY57-5;Q8IY57-3 Q8IY57 YAF2 YY1-associated factor 2 1 0 TKSPPASSAASADQHSQS(0.216)GS(0.26)S(0.26)S(0.26)DNT(0.002)ER 71.472 0.0057355 237150000 32003 43116 36505 34383 51304 43323 59907 71289 38412 49255 TRUE FALSE FALSE 39121.95694 48158.04114 50009.7186 36261.25623 46195.99362 45591.32529 47107.38005 53805.26097 46120.93606 36976.63497 1.058018313 1.302391123 1.352468083 0.980653222 1.249329304 1.23297659 1.273976934 1.455115129 1.247299439 1 15.17432632 -6.360535682 2.505775466 1.278560303 1.191376651 0.012481134 0.146049101 0.911384682 11.19394252 0.057177084 0.049590812 4.36E-07 6.360535682 -0.087183652 TKSPPASSAASADQHSQSGS(ph)SSDNTER ddPTM_HeLa_A486_30min_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57;Q8IY57-5;Q8IY57-3 Q8IY57 YAF2 YY1-associated factor 2 1 0 TKSPPASSAASADQHSQS(0.006)GS(0.331)S(0.331)S(0.331)DNTER 157.43 5.88E-10 103370000 55014 49498 31610 6415.4 45174 42622 48163 50108 38592 43045 TRUE FALSE FALSE 51157.80269 45575.59821 43850.23855 14935.37542 39507.85569 37363.73099 36112.10798 38699.50225 41937.18563 32266.25182 1.585489476 1.412485047 1.359012469 0.462879156 1.224432757 1.157981757 1.119191289 1.199380159 1.299722876 1 14.97773838 -5.016324011 24.9655233 1.073601602 1.470677808 0.396252657 0.222231132 724.6811327 1108312.468 0.061175238 0.109860784 9.63E-06 5.016324011 0.397076206 TKSS(ph)DDLLAGMAGGVTVTNGVK ddPTM_HeLa_A486_30min_R1 1 TKSSDDLLAGMAGGVTVTNGVK 22 1 Q69YQ0-2;Q69YQ0;F8WAN1;C9J8U1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 T(0.265)KS(0.265)S(0.469)DDLLAGMAGGVTVTNGVK 227.04 1.74E-36 523100000 543470 430990 164440 495820 356810 673410 878420 766390 363830 993940 TRUE FALSE FALSE 505375.5595 396836.7828 228115.5719 1154294.017 312055.5627 590331.5209 658630.025 591899.7272 395367.0773 745050.9545 0.678310062 0.532630393 0.306174458 1.549281979 0.418837881 0.792337111 0.884006686 0.794441942 0.530657769 1 19.50697957 TKSVS(ph)SMSEFESLLDCSPYLAGGDAR ddPTM_HeLa_A485_30min_R1 3 TKSVSSMSEFESLLDCSPYLAGGDAR 26 1 O94964-2;H0YDM2;O94964;O94964-3;X6R3R3;O94964-4 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 T(0.165)KS(0.165)VS(0.224)S(0.224)MS(0.224)EFESLLDCSPYLAGGDAR;T(0.173)KS(0.173)VS(0.216)S(0.216)MS(0.216)EFES(0.006)LLDCSPYLAGGDAR;T(0.173)KS(0.173)VS(0.218)S(0.218)MS(0.218)EFES(0.001)LLDCSPYLAGGDAR ;; 159.08 1.71E-10 324832000 146760 147179 125872 206762 255219 170542 274389 256980 144493 271248 TRUE FALSE FALSE 179406.2557 164390.3038 172437.2908 218056.8845 229808.5002 179471.3154 215763.5486 193955.2521 173491.4197 203630.8655 0.88103665 0.80729561 0.846813131 1.07084397 1.128554356 0.881356149 1.059581749 0.952484544 0.851989797 1 17.63559673 -5.236639616 21.12144607 0.994016979 0.84127284 0.408414407 0.081051012 111.1349791 94649.17626 0.022676002 0.039223796 5.80E-06 5.236639616 -0.152744139 TKT(ph)PHTFPHSR ddPTM_HeLa_A486_30min_R1 1 TKTPHTFPHSR 11 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 T(0.212)KT(0.788)PHTFPHSR 86.214 0.0037238 321690000 25030 24482 18150 15110 25735 20114 22202 22677 20382 27377 TRUE FALSE FALSE 23275.52626 22541.95716 25178.16607 35176.84362 22507.07633 17632.53918 16646.82477 17513.94214 22148.72817 20521.62101 1.134195308 1.09844915 1.226909223 1.714135721 1.096749439 0.85921766 0.81118469 0.853438533 1.079287458 1 14.32485707 -5.999048452 24.99983087 0.912776375 1.291081987 0.509702402 0.172295599 28.2098042 741112.218 0.057194002 0.064316924 1.00E-06 5.999048452 0.378305612 TLAPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 TLAPSPK 7 0 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 TLAPS(1)PK 64.191 0.029351 187780000 661390 658970 507680 1030100 880160 650740 1015500 1020600 564580 1308400 TRUE FALSE FALSE 808513.9237 736030.8092 695491.9583 1086371.755 792528.18 684811.7402 798530.1291 770296.2498 677886.0274 982239.9593 0.823132796 0.749339102 0.708067262 1.106014619 0.806858011 0.697193933 0.812968482 0.784224102 0.690142995 1 19.90571599 -5.993085573 24.99970222 0.78082403 0.845621224 0.026232658 0.126807636 603.8470215 2183240.013 0.039659794 0.044874049 1.02E-06 5.993085573 0.064797194 TLAPS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TLAPSPK 7 0 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 TLAPS(1)PK;TLAPS(1)PK ; 89.886 0.006847 495270000 2012340 1898360 990640 1213060 1702210 2046970 2663600 2572200 1485440 3298800 TRUE FALSE FALSE 1871285.358 1747927.04 1374242.338 2824064.985 1488702.949 1794435.653 1997139.107 1986566.211 1614199.135 2472759.008 0.756760101 0.706873187 0.555752636 1.142070446 0.60204126 0.725681576 0.807656185 0.803380436 0.652792743 1 21.23769021 -10.35740312 2.949393842 1.003132983 0.753014159 0.194862641 0.152160002 33140511.15 40792121.01 897120.5531 0.038761969 4.39E-11 10.35740312 -0.250118824 TLAQLNPESSLFIIASK ddPTM_HeLa_A485_30min_R1 2 TLAQLNPESSLFIIASK 17 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 258.36 1.19E-42 23986000 19956.6 22604.9 20548.2 23869 33164.5 24979.9 32182.1 36091.4 23119.5 38665 FALSE FALSE TRUE 24395.87682 25248.34642 28149.83426 25172.90303 29862.52593 26287.80894 25306.13143 27239.92756 27759.37159 29026.52708 0.840468333 0.869836972 0.969796841 0.867237853 1.028801202 0.90564775 0.871827738 0.938449422 0.956344916 1 14.82508435 -4.61421822 5.310387219 0.93646261 0.847242244 0.336210441 0.049084803 0.217020024 9.58109247 0.012264904 0.03432799 2.43E-05 4.61421822 -0.089220366 TLAQLNPESSLFIIASK ddPTM_HeLa_A486_30min_R1 1 TLAQLNPESSLFIIASK 17 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;A0A2R8Y6C7;A0A0J9YYH3;A0A0J9YX90;A0A0J9YXP8 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 195.2 6.93E-18 14956000 8825.9 9364.2 6105.6 3237.1 9517 10300 9775 10604 7626.9 14521 FALSE FALSE TRUE 8207.249987 8622.146688 8469.851834 7536.132394 8323.289117 9029.290723 7329.191611 8189.700684 8288.005833 10884.84708 0.754006917 0.792123823 0.778132368 0.692350782 0.764667528 0.829528486 0.67333896 0.752394647 0.761426024 1 13.41003352 -11.22630897 1.52566777 1.542134566 0.755188595 0.747462229 0.042664845 99782.67101 15240.29616 185734.4368 0.011932773 5.94E-12 11.22630897 -0.786945971 TLAQNIR ddPTM_HeLa_A485_30min_R1 2 TLAQNIR 7 0 Q70Z35 Q70Z35 PREX2 "Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein" 0 0 ; ; 132.72 0.0058617 230330000 459490 426090 708010 722030 1001930 504510 721990 641090 672720 987860 FALSE FALSE TRUE 561701.9653 475917.519 969932.3618 761472.6706 902174.3312 530925.3635 567730.9384 483861.6723 807728.7334 741604.6822 0.757414265 0.641740176 1.307883277 1.026790538 1.216516498 0.715914255 0.765543897 0.652452289 1.089163476 1 19.50029083 -6.292942623 24.98828984 0.817951133 0.990413912 0.093853896 0.218252273 1533.244469 1216160.496 0.08019562 0.070731764 5.09E-07 6.292942623 0.172462778 TLAQNIR ddPTM_HeLa_A486_30min_R1 2 TLAQNIR 7 0 Q70Z35 Q70Z35 PREX2 "Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein" 0 0 ; ; 122.79 0.0095065 310070000 394920 827220 850080 265000 1214320 857400 959800 972130 780020 684370 FALSE FALSE TRUE 367238.1474 761668.0745 1179253.742 616933.3924 1062008.663 751622.7054 719647.8883 750797.2204 847632.7616 512999.2975 0.715864815 1.484735122 2.298743386 1.202600852 2.07019516 1.465153479 1.402824315 1.463544344 1.652307841 1 18.96859732 -6.504387736 24.52091328 1.420539302 1.59189227 0.027899746 0.434925273 2623.127403 3478537.431 0.155014509 0.134159114 3.13E-07 6.504387736 0.171352968 TLAYLLPAIVHINHQPYLER ddPTM_HeLa_A485_30min_R1 2 TLAYLLPAIVHINHQPYLER 20 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 186.9 5.08E-19 406150000 105048 131138 122784 114400 154253 120938 187937 171715 87628 145952 FALSE FALSE TRUE 128415.5652 146473.4484 168206.9111 120649.3823 138895.0297 127270.1267 147782.7246 129601.627 105214.1358 109568.8524 1.172007941 1.336816486 1.535170875 1.101128465 1.267650674 1.161553889 1.348765834 1.18283275 0.960255889 1 16.74147821 -7.63587552 3.73389024 0.97951469 1.27562153 0.504180506 0.115087747 0.192826385 4.893382336 0.093120643 0.030491132 2.31E-08 7.63587552 0.296106841 TLAYLLPAIVHINHQPYLER ddPTM_HeLa_A486_30min_R1 3 TLAYLLPAIVHINHQPYLER 20 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ;; ;; 185.87 5.89E-19 313215000 148367 192229 188754 73492.7 251178 167285 253996 218510 196034 227879 FALSE FALSE TRUE 137967.2395 176996.074 261844.6038 171094.7197 219672.9131 146647.0775 190443.5143 168760.043 213026.385 170816.6152 0.807692152 1.036175982 1.532898914 1.001628088 1.286016076 0.858505933 1.11490041 0.987960351 1.247105762 1 17.38208879 -6.244574992 24.84125103 1.045517351 1.142440896 0.047968955 0.200513922 2751.947446 4053620.555 0.066577134 0.066421307 5.69E-07 6.244574992 0.096923545 TLDFDPLLSPAS(ph)PK ddPTM_HeLa_A485_30min_R1 5 TLDFDPLLSPASPK 14 0 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK ;;;; 228.73 4.11E-28 664081000 1599846 1486747 1042701 2759270 2101166 1592100 2841010 2551790 1382164 3652010 TRUE FALSE FALSE 1955726.223 1660609.129 1428439.49 2910001.933 1891966.535 1675459.894 2234005.005 1925959.501 1659551.637 2741631.117 0.713344042 0.605701153 0.52101812 1.061412644 0.690087927 0.611117916 0.814845218 0.702486738 0.605315437 1 21.38660304 -10.906755 2.359477291 1.177453342 0.705372271 0.282363073 0.142081179 15291585.71 7660211.644 15037898.47 0.039704563 1.24E-11 10.906755 -0.472081071 TLDFDPLLSPAS(ph)PK ddPTM_HeLa_A486_30min_R1 6 TLDFDPLLSPASPK 14 0 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK;TLDFDPLLS(0.011)PAS(0.989)PK;TLDFDPLLSPAS(1)PK;TLDFDPLLSPAS(1)PK ;;;;; 278.2 5.37E-49 745268000 1845906 1835523 839030 1350834 1510213 2062470 2730640 2463580 1414816 3491450 TRUE FALSE FALSE 1716517.522 1690069.473 1163924.886 3144809.819 1320788.003 1808023.421 2047404.99 1902676.614 1537453.39 2617168.194 0.655868249 0.645762651 0.444726819 1.201607839 0.504663019 0.690831955 0.782297827 0.726998218 0.587449211 1 21.31957521 -10.853174 2.372119678 1.135580039 0.697573693 0.181922218 0.194894092 27245473.69 15350514.88 20884246.87 0.049451327 1.40E-11 10.853174 -0.438006345 TLDFDPLLSPAS(ph)PKR ddPTM_HeLa_A485_30min_R1 4 TLDFDPLLSPASPKR 15 1 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 TLDFDPLLS(0.012)PAS(0.988)PKR;TLDFDPLLS(0.016)PAS(0.984)PKR;TLDFDPLLS(0.047)PAS(0.953)PKR;TLDFDPLLS(0.001)PAS(0.999)PKR ;;; 205.62 1.06E-25 927460000 1393930 1318200 1022840 1786950 2012550 1684840 2608920 2774760 1313910 2473390 TRUE FALSE FALSE 1704004.919 1472352.023 1401231.08 1884566.554 1812173.456 1773055.617 2051502.929 2094245.759 1577599.685 1856819.392 0.91770095 0.792943045 0.754640481 1.014943382 0.975955692 0.954888572 1.104847858 1.127867238 0.849624735 1 20.82440206 -5.272844025 24.53482393 1.01033092 0.818879649 0.507043703 0.082172539 434.278811 934263.7988 0.023461815 0.03516004 5.34E-06 5.272844025 -0.191451271 TLDFDPLLSPAS(ph)PKR ddPTM_HeLa_A486_30min_R1 4 TLDFDPLLSPASPKR 15 1 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 TLDFDPLLS(0.037)PAS(0.963)PKR;TLDFDPLLS(0.004)PAS(0.996)PKR;TLDFDPLLS(0.001)PAS(0.999)PKR;TLDFDPLLS(0.001)PAS(0.999)PKR ;;; 199.15 1.75E-25 785950000 1853450 1871280 1143750 1058430 1994700 2115610 2761870 2745750 1454960 2669790 TRUE FALSE FALSE 1723532.726 1722992.958 1586640.631 2464078.53 1744506.126 1854607.548 2070820.914 2120602.664 1581077.104 2001257.207 0.861224994 0.86095528 0.792821945 1.231265288 0.871705106 0.926721234 1.034760003 1.059635242 0.790041929 1 20.93247517 TLDRS(ph)GDLGDMEPLKGTTPLMQK ddPTM_HeLa_A486_30min_R1 1 TLDRSGDLGDMEPLKGTTPLMQK 23 2 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716-21;O60716-11;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-24;O60716-27;O60716-29;O60716-31;O60716-32 O60716-5 CTNND1 Catenin delta-1 1 0 T(0.009)LDRS(0.991)GDLGDMEPLKGTTPLMQK 156.37 2.18E-10 113690000 90184 95293 66956 76557 179960 126170 188440 188100 96188 141800 TRUE FALSE FALSE 83862.56731 87741.63563 92883.15634 178228.565 157387.7387 110604.4282 141290.3189 145273.7362 104525.6533 106292.357 0.788980221 0.82547455 0.87384605 1.676776863 1.480706075 1.040568027 1.329261321 1.366737367 0.983378826 1 16.69767834 -5.087518046 9.869906657 1.285302076 0.817724319 0.483067668 0.208171517 0.373613848 40.10749236 0.057103104 0.099116499 8.17E-06 5.087518046 -0.467577757 TLDS(ph)DEERPR ddPTM_HeLa_A485_30min_R1 4 TLDSDEERPR 10 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 T(0.01)LDS(0.99)DEERPR;T(0.001)LDS(0.999)DEERPR;T(0.011)LDS(0.989)DEERPR;TLDS(1)DEERPR ;;; 110.15 0.00035995 1293720000 884250 836770 846440 1171040 1091310 762960 1004260 790230 955860 1433150 TRUE FALSE FALSE 1080948.362 934622.9726 1159573.379 1235010.95 982655.3446 802907.4058 789691.647 596424.8535 1147692.334 1075892.08 1.004699618 0.868695838 1.077778525 1.147894824 0.913340067 0.746271323 0.733987787 0.554353791 1.066735554 1 20.03710194 -6.025752713 5.319517601 0.78989326 1.019570789 0.281597696 0.149796917 0.216691637 17.73765643 0.048732328 0.05100139 9.42E-07 6.025752713 0.229677529 TLDS(ph)DEERPR ddPTM_HeLa_A486_30min_R1 3 TLDSDEERPR 10 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 TLDS(1)DEERPR;T(0.001)LDS(0.999)DEERPR;T(0.001)LDS(0.999)DEERPR ;; 142.12 3.11E-06 1317840000 1003560 1221060 854040 375181 1004100 1151600 1104240 1066450 989690 1162970 TRUE FALSE FALSE 933215.6264 1124298.759 1184747.16 873440.3286 878156.4151 1009527.301 827947.4725 823642.6154 1075477.126 871754.7423 1.070502495 1.289696177 1.359037241 1.001933556 1.007343433 1.158040503 0.949748172 0.94481002 1.233692315 1 19.73356278 -5.275217679 24.7806516 1.039443581 1.244740395 0.408932869 0.108736126 639.0985314 1149434.991 0.030427848 0.045408548 5.31E-06 5.275217679 0.205296814 TLDS(ph)DEERPRPAPPDWSHMR ddPTM_HeLa_A485_30min_R1 17 TLDSDEERPRPAPPDWSHMR 20 2 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 T(0.006)LDS(0.994)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.004)LDS(0.995)DEERPRPAPPDWS(0.001)HMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.001)LDS(0.999)DEERPRPAPPDWSHMR;T(0.01)LDS(0.99)DEERPRPAPPDWSHMR;T(0.002)LDS(0.998)DEERPRPAPPDWSHMR;T(0.052)LDS(0.948)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.004)LDS(0.996)DEERPRPAPPDWSHMR;T(0.032)LDS(0.968)DEERPRPAPPDWSHMR ;;;;;;;;;;;;;;;; 265.62 2.21E-59 60347990000 5336736 6219051 6163144 6406067 8468330 6523658 8543930 8831920 6048709 8480020 TRUE FALSE FALSE 6523874.512 6946314.916 8443147.435 6756014.219 7625193.331 6865226.645 6718449.558 6665877.772 7262629.414 6366107.077 1.024782404 1.091140132 1.326265382 1.061247343 1.197779622 1.078402635 1.055346616 1.047088541 1.140827405 1 22.60197999 -6.430506937 7.496685703 1.065021731 1.143336432 0.171198064 0.083868875 0.527184493 37.70799903 0.029738703 0.026139492 3.71E-07 6.430506937 0.078314701 TLDS(ph)DEERPRPAPPDWSHMR ddPTM_HeLa_A486_30min_R1 18 TLDSDEERPRPAPPDWSHMR 20 2 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 T(0.013)LDS(0.987)DEERPRPAPPDWSHMR;T(0.006)LDS(0.994)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.007)LDS(0.993)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.003)LDS(0.997)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;TLDS(1)DEERPRPAPPDWSHMR;T(0.006)LDS(0.994)DEERPRPAPPDWSHMR;T(0.001)LDS(0.999)DEERPRPAPPDWSHMR;T(0.003)LDS(0.997)DEERPRPAPPDWSHMR;T(0.007)LDS(0.993)DEERPRPAPPDWSHMR;T(0.001)LDS(0.999)DEERPRPAPPDWSHMR;T(0.002)LDS(0.998)DEERPRPAPPDWSHMR;T(0.041)LDS(0.959)DEERPRPAPPDWSHMR;T(0.025)LDS(0.975)DEERPRPAPPDWSHMR;T(0.016)LDS(0.984)DEERPRPAPPDWSHMR;T(0.036)LDS(0.964)DEERPRPAPPDWSHMR ;;;;;;;;;;;;;;;;; 272.81 1.18E-72 72054060000 6803867 7463148 5927278 2744352 8486306 7556977 8720878 8813306 6426685 8374400 TRUE FALSE FALSE 6326951.059 6871740.972 8222478.78 6388990.148 7421874.37 6624674.011 6538822.084 6806708.617 6983755.23 6277395.732 1.007894249 1.094680225 1.309855095 1.017777184 1.182317427 1.055322031 1.04164567 1.084320458 1.11252429 1 22.58173473 -6.299516977 24.13586483 1.062962695 1.125549197 0.12372068 0.084256329 862.6948573 546824.4749 0.029618569 0.026121776 5.02E-07 6.299516977 0.062586502 TLDSGTSEIVKS(ph)PR ddPTM_HeLa_A485_30min_R1 3 TLDSGTSEIVKSPR 14 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 TLDSGTS(0.001)EIVKS(0.998)PR;TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR ;; 182.57 1.09E-10 935920000 822990 812230 632250 950550 1216170 979450 1355430 1468820 779740 1347430 TRUE FALSE FALSE 1006061.286 907213.233 866145.5851 1002476.14 1095083.845 1030732.487 1065831.308 1108589.592 936226.6658 1011540.499 0.994583299 0.896862987 0.856263873 0.991039055 1.082590214 1.018973031 1.053671414 1.095941876 0.92554541 1 19.94812265 -5.485342403 6.622513056 1.035231439 0.914900349 0.460710739 0.054710063 0.170803854 22.35480758 0.015263855 0.022193541 3.27E-06 5.485342403 -0.12033109 TLDSGTSEIVKS(ph)PR ddPTM_HeLa_A486_30min_R1 4 TLDSGTSEIVKSPR 14 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR ;;; 135.18 5.48E-06 2542830000 2294040 2107140 1277500 919070 2348420 2321470 2909820 2824220 1700280 2839630 TRUE FALSE FALSE 2133239.642 1940162.552 1772182.213 2139641.407 2053859.265 2035070.634 2181752.259 2181206.758 1847661.639 2128568.165 1.002194657 0.91148716 0.832570101 1.005202202 0.964901805 0.956074918 1.024985854 1.024729578 0.868030289 1 21.02145186 -5.30919289 24.99986836 0.979269425 0.915023927 0.198682681 0.057260227 606.0869264 317296.5733 0.01612805 0.023921791 4.91E-06 5.30919289 -0.064245498 TLDVKS(ph)PEAK ddPTM_HeLa_A485_30min_R1 3 TLDVKSPEAK 10 1 P12036 P12036 NEFH Neurofilament heavy polypeptide 1 0 TLDVKS(1)PEAK;T(0.021)LDVKS(0.979)PEAK;T(0.001)LDVKS(0.999)PEAK ;; 69.716 0.0068834 334717000 814440 587180 356730 1707640 959000 787770 1512750 1287910 577160 2418000 TRUE FALSE FALSE 995609.3682 655845.5932 488699.2718 1800924.049 863518.5927 829016.4191 1189538.604 972048.0531 692990.718 1815237.1 0.548473457 0.361300236 0.269220628 0.992115052 0.475705677 0.456698697 0.655307565 0.535493712 0.381763197 1 20.79172657 -10.68885 2.717407638 1.068047013 0.522766947 0.368725388 0.188546157 33953106.58 29520875.24 15907478.82 0.050667053 2.05E-11 10.68885 -0.545280066 TLDVKS(ph)PEAK ddPTM_HeLa_A486_30min_R1 2 TLDVKSPEAK 10 1 P12036 P12036 NEFH Neurofilament heavy polypeptide 1 0 TLDVKS(1)PEAK;TLDVKS(1)PEAK ; 108.17 0.00040599 203361000 702690 600640 204417 557520 497380 837090 1256050 1094520 482790 1609270 TRUE FALSE FALSE 653435.0597 553043.0989 283572.7369 1297934.736 434993.9625 733818.3467 941773.0049 845321.6892 524638.6259 1206298.317 0.541686124 0.458462961 0.235076791 1.075964972 0.360602312 0.608322449 0.780713188 0.700756751 0.434916155 1 20.2021553 -14 0.122056711 2.287689311 0.395691709 0.242910771 0.224671096 223.6393916 1.757349517 71.88182676 2.041227378 1.00E-14 14 -1.891997601 TLEAEFNSPS(ph)PPTPEPGEGPR ddPTM_HeLa_A485_30min_R1 2 TLEAEFNSPSPPTPEPGEGPR 21 0 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 TLEAEFNS(0.003)PS(0.997)PPTPEPGEGPR;TLEAEFNS(0.027)PS(0.965)PPT(0.008)PEPGEGPR ; 205.36 1.30E-26 118418000 103315 146889 143400 125259 181637 145814 188989 181366 133620 183883 TRUE FALSE FALSE 126297.0653 164066.3908 196449.6274 132101.582 163552.5825 153448.5956 148609.9563 136885.7041 160436.3084 138044.3522 0.914902082 1.188504913 1.423090653 0.956950284 1.184782861 1.111589088 1.076537749 0.991606697 1.162208419 1 17.07477234 -6.701765377 2.86126108 1.054588598 1.143356951 0.062907049 0.137046876 0.768627693 12.79514864 0.060526887 0.042787256 1.99E-07 6.701765377 0.088768353 TLEAEFNSPS(ph)PPTPEPGEGPR ddPTM_HeLa_A486_30min_R1 3 TLEAEFNSPSPPTPEPGEGPR 21 0 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 TLEAEFNS(0.015)PS(0.984)PPT(0.001)PEPGEGPR;TLEAEFNS(0.006)PS(0.993)PPT(0.001)PEPGEGPR;TLEAEFNS(0.151)PS(0.849)PPTPEPGEGPR ;; 211.75 4.75E-27 205441000 345622 381447 319047 118313 414908 354342 399019 400180 319239 377045 TRUE FALSE FALSE 321395.6826 351219.7505 442590.5428 275438.6432 362866.3698 310626.8867 299180.2258 309067.7499 346910.8936 282630.4778 1.137158614 1.242681798 1.565968915 0.974553931 1.283889737 1.099056581 1.058556133 1.093540061 1.227436249 1 18.10855752 -5.286127753 24.94079666 1.114422537 1.308011103 0.340448477 0.133394535 875.5410925 884490.9567 0.037113892 0.055077851 5.17E-06 5.286127753 0.193588566 TLEEVVMAEEEDEGTDRPGS(ph)PA ddPTM_HeLa_A485_30min_R1 2 TLEEVVMAEEEDEGTDRPGSPA 22 1 F8WC89;A6NKF1 F8WC89 SAC3D1 SAC3 domain-containing protein 1 1 0 TLEEVVMAEEEDEGTDRPGS(1)PA;TLEEVVMAEEEDEGTDRPGS(1)PA ; 173.21 1.54E-14 606600000 495730 726230 716550 534120 817850 671240 808760 864750 626690 767800 TRUE FALSE FALSE 606003.4283 811156.2811 981631.6631 563297.6231 736421.9824 706385.0885 635961.819 652668.7066 752460.9347 576401.5903 1.051356274 1.407276272 1.703034273 0.977265907 1.277619623 1.22550857 1.103331132 1.132315937 1.305445626 1 19.13671479 -5.284178058 24.99770461 1.158468168 1.389227796 0.277831616 0.17746037 1048.333737 1152480.739 0.049859724 0.074011549 5.20E-06 5.284178058 0.230759627 TLEEVVMAEEEDEGTDRPGS(ph)PA ddPTM_HeLa_A486_30min_R1 2 TLEEVVMAEEEDEGTDRPGSPA 22 1 F8WC89;A6NKF1 F8WC89 SAC3D1 SAC3 domain-containing protein 1 1 0 TLEEVVMAEEEDEGTDRPGS(1)PA;TLEEVVMAEEEDEGTDRPGS(1)PA ; 174.53 1.15E-14 652470000 645300 685330 653110 284370 830790 667620 788700 790740 656960 796270 TRUE FALSE FALSE 600067.8023 631021.9549 906011.6829 662027.7313 726584.5714 585255.8323 591358.918 610705.7637 713905.8218 596878.8092 1.005342782 1.057202811 1.517915646 1.10914933 1.217306697 0.980527074 0.990752074 1.023165431 1.196064948 1 19.18707851 -6.254790908 24.18154687 1.036590379 1.189167761 0.204298758 0.140950974 566.5484283 2060627.073 0.04863642 0.047529448 5.56E-07 6.254790908 0.152577382 TLEGELHDLR ddPTM_HeLa_A485_30min_R1 6 TLEGELHDLR 10 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;;;; ;;;;; 195.27 5.62E-10 1630000000 1538960 2045130 1976270 1642140 2473040 1931430 2359920 2566670 1842620 2146280 FALSE FALSE TRUE 1881296.343 2284290.163 2707374.512 1731845.95 2226815.454 2032556.688 1855703.813 1937190.158 2212416.932 1611251.895 1.16759915 1.417711389 1.680292523 1.074844942 1.382040549 1.261476678 1.151715519 1.202288831 1.373104317 1 20.61975062 -5.283396697 24.99946667 1.222247265 1.421452145 0.270678246 0.160554911 1096.02075 1247870.109 0.044649463 0.066287312 5.21E-06 5.283396697 0.19920488 TLEGELHDLR ddPTM_HeLa_A486_30min_R1 6 TLEGELHDLR 10 0 P02545;P02545-6;P02545-3;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;;;; ;;;;; 199.33 3.51E-13 1496832000 1371817 1555244 1293085 454160 1830415 1372640 1504558 1602667 1273834 1449731 FALSE FALSE TRUE 1275659.712 1432000.801 1793802.142 1057307.432 1600827.283 1203297.633 1128101.675 1237774.71 1384250.957 1086708.921 1.173874335 1.317740908 1.650673981 0.972944467 1.47309666 1.107286053 1.03809001 1.139012191 1.273801042 1 20.05153413 -6.295279569 24.02739147 1.115729303 1.317019478 0.249127431 0.178769484 595.1935456 422600.3037 0.061632345 0.054358605 5.07E-07 6.295279569 0.201290175 TLENSPISSCDT(ph)SDTEGPVPVNSAAVLKK ddPTM_HeLa_A486_30min_R1 1 TLENSPISSCDTSDTEGPVPVNSAAVLKK 29 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 TLENSPISSCDT(0.64)S(0.36)DTEGPVPVNSAAVLKK 153.88 1.21E-09 156620000 177670 218470 93721 93074 213530 220350 257650 267800 155090 219350 TRUE FALSE FALSE 165216.2505 201157.6415 130012.2811 216680.9757 186747.0763 193165.4574 193183.2449 206827.786 168533.3261 164423.3323 1.004822419 1.223412996 0.790716739 1.317823771 1.135769928 1.174805635 1.174913817 1.257898032 1.024996415 1 17.32705551 -4.223432438 22.17727821 1.129779356 1.004821188 0.054271441 0.144023726 13866.11734 8090274.492 0.034359751 6.750018988 5.98E-05 4.223432438 -0.124958168 TLEPVKPPTVPNDYMT(ph)SPAR ddPTM_HeLa_A486_30min_R1 2 TLEPVKPPTVPNDYMTSPAR 20 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TLEPVKPPTVPNDYMT(0.54)S(0.459)PAR;TLEPVKPPTVPNDY(0.003)MT(0.499)S(0.499)PAR ; 127.16 7.05E-07 1443430000 525220 474060 323806 178078 468150 475090 555680 542400 384060 611480 TRUE FALSE FALSE 488404.7902 436493.7591 449192.355 414574.5836 409430.2617 416478.2262 416642.9866 418907.3605 417350.63 458361.4279 1.065545136 0.952291647 0.979995976 0.904470923 0.893247635 0.90862407 0.908983525 0.913923675 0.91052738 1 18.80612612 -3.350893696 0.875109054 0.915976579 1.605812316 0.625768088 0.032320793 5.579431956 1.023902123 0.010434598 5.376676372 0.000445765 3.350893696 0.689835737 TLEPVKPPTVPNDYMTS(ph)PAR ddPTM_HeLa_A485_30min_R1 3 TLEPVKPPTVPNDYMTSPAR 20 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TLEPVKPPTVPNDYMT(0.065)S(0.935)PAR;TLEPVKPPTVPNDYMT(0.175)S(0.824)PAR;TLEPVKPPTVPNDYMT(0.211)S(0.789)PAR ;; 115.5 7.96E-06 2674140000 687450 698250 583870 728210 873780 752770 925460 957170 612990 1004910 TRUE FALSE FALSE 840370.8808 779904.2635 799867.8099 767990.2684 786783.3952 792183.8732 727727.9107 722422.5567 736011.4703 754404.431 1.113952737 1.033801276 1.060263934 1.018008692 1.042919902 1.0500785 0.964638967 0.95760646 0.97561923 1 19.52497862 -6.758479172 24.99068455 0.97093336 1.050548598 0.691355341 0.02568319 42.76317117 361020.7188 0.009947953 0.007364378 1.74E-07 6.758479172 0.079615237 TLEPVKPPTVPNDYMTS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 TLEPVKPPTVPNDYMTSPAR 20 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TLEPVKPPTVPNDYMT(0.03)S(0.97)PAR;TLEPVKPPTVPNDY(0.089)MT(0.186)S(0.725)PAR ; 173.74 3.89E-14 1695780000 893830 889180 472490 289508 869480 837400 1004380 968920 683180 1010390 TRUE FALSE FALSE 831177.1327 818718.1385 655450.7817 673989.2549 760421.7108 734090.1021 753073.5008 748318.0674 742398.5925 757381.7675 1.097434832 1.080984747 0.865416636 0.889893689 1.004013753 0.969247127 0.994311631 0.988032851 0.980217143 1 19.53066117 -4.638770881 8.849921678 0.96149659 1.093052433 0.568995449 0.044582391 0.184385871 13.25636035 0.012297615 0.032679769 2.30E-05 4.638770881 0.131555842 TLEPVRPPVVPNDYVPS(ph)PTR ddPTM_HeLa_A485_30min_R1 4 TLEPVRPPVVPNDYVPSPTR 20 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 TLEPVRPPVVPNDYVPS(0.955)PT(0.045)R;TLEPVRPPVVPNDYVPS(0.992)PT(0.008)R;TLEPVRPPVVPNDYVPS(0.993)PT(0.007)R;TLEPVRPPVVPNDYVPS(0.985)PT(0.015)R ;;; 195.64 2.68E-20 2467770000 564561 710933 648387 545770 850626 601420 742486 842920 583664 752820 TRUE FALSE FALSE 690145.6467 794070.4301 888252.3329 575584.0331 765934.6887 632909.4212 583847.8005 636192.5484 700800.0111 565155.8286 1.22115992 1.405046874 1.571694545 1.01845191 1.355262832 1.119884798 1.033074014 1.125694041 1.240012003 1 19.10828919 -5.268473087 24.99980633 1.137960604 1.399875092 0.485033526 0.128029853 473.1377005 1681666.224 0.03588575 0.054551829 5.39E-06 5.268473087 0.261914488 TLEPVRPPVVPNDYVPS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 TLEPVRPPVVPNDYVPSPTR 20 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 TLEPVRPPVVPNDYVPS(0.972)PT(0.028)R;TLEPVRPPVVPNDYVPS(0.992)PT(0.008)R;TLEPVRPPVVPNDYVPS(0.986)PT(0.014)R ;; 152.34 5.31E-10 2184050000 404004 405630 337883 129002 466500 359242 393550 432350 325214 397660 TRUE FALSE FALSE 375685.4059 373486.4015 468720.3464 300323.1754 407987.2201 314922.3745 295079.6275 333913.3431 353403.8114 298083.3477 1.260336778 1.252959632 1.57244727 1.007514099 1.368701819 1.056491002 0.98992322 1.120201265 1.185587233 1 18.18535626 -5.953413162 1.2446858 1.07516456 1.323351672 0.341936234 0.144778476 0.524198259 1.701868518 0.061950595 0.073816489 1.11E-06 5.953413162 0.248187111 TLESFKLDST(ph)PLK ddPTM_HeLa_A485_30min_R1 1 TLESFKLDSTPLK 13 1 B7ZBC9;B7ZBC8;O75449;O75449-2 B7ZBC9 KATNA1 Katanin p60 ATPase-containing subunit A1 1 0 TLESFKLDS(0.102)T(0.898)PLK 118.33 0.00016306 133590000 242970 172720 113860 348370 268880 266420 376950 353440 181510 511850 TRUE FALSE FALSE 297017.8383 192918.1015 155981.5521 367400.571 242109.3631 280369.3392 296411.5531 266758.2858 217937.3921 384255.2149 0.772970221 0.502057211 0.405932167 0.956136851 0.630074372 0.72964355 0.771392402 0.694221641 0.567168339 1 18.55170531 -14 0.253790397 3.002779237 0.642688343 0.297545941 0.148762695 245.6187875 2.430660564 256.3328948 0.213610501 1.00E-14 14 -2.360090893 TLESFKLDST(ph)PLK ddPTM_HeLa_A486_30min_R1 1 TLESFKLDSTPLK 13 1 B7ZBC9;B7ZBC8;O75449;O75449-2 B7ZBC9 KATNA1 Katanin p60 ATPase-containing subunit A1 1 0 TLESFKLDS(0.081)T(0.918)PLK 89.541 0.0019687 125550000 572620 516090 249710 341900 510860 661750 935660 832470 404530 1001700 TRUE FALSE FALSE 532482.295 475193.1488 346404.3995 795960.4787 446783.1752 580110.0132 701547.9716 642934.7537 439594.9861 750867.8 0.709155853 0.632858605 0.461338733 1.060054085 0.59502242 0.772586084 0.934316229 0.856255593 0.585449244 1 19.5181994 -5.851477222 0.054098795 1.468482653 3.19E-13 0.196860247 0.16839408 173.7663204 2.898196421 31.64763114 46.69299559 1.41E-06 5.851477222 -1.468482653 TLETQPLAPDCCPSDQDPAPAHPS(ph)PHAS(ph)PMNK ddPTM_HeLa_A485_30min_R1 2 TLETQPLAPDCCPSDQDPAPAHPSPHASPMNK 32 0 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 2 0 TLETQPLAPDCCPSDQDPAPAHPS(1)PHAS(1)PMNK;TLETQPLAPDCCPSDQDPAPAHPS(1)PHAS(1)PMNK ; 203.62 1.85E-29 1079680000 378809 247543 302143 557472 571794 320766 481481 357689 378841 749620 TRUE FALSE FALSE 463073.7552 276491.0005 413918.2689 587925.2838 514864.1817 337560.8118 378608.651 269965.2119 454870.9138 562753.5297 0.822871347 0.49131811 0.735523186 1.044729624 0.914901737 0.599837751 0.672778812 0.479721934 0.808295088 1 19.10214368 -6.275148447 24.46925297 0.677150102 0.794422394 0.03887237 0.184316283 1705.210087 3043612.139 0.067405672 0.059786644 5.31E-07 6.275148447 0.117272292 TLETQPLAPDCCPSDQDPAPAHPS(ph)PHAS(ph)PMNK ddPTM_HeLa_A486_30min_R1 1 TLETQPLAPDCCPSDQDPAPAHPSPHASPMNK 32 0 Q9BUR4;E9PMG4;E9PMR3 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 2 0 TLETQPLAPDCCPSDQDPAPAHPS(1)PHAS(1)PMNK 145.32 9.13E-10 476840000 82998 109080 76122 65230 135970 145030 161600 159710 85068 143360 TRUE FALSE FALSE 77180.2688 100436.1035 105598.477 151858.7365 118915.3747 127137.6732 121165.9708 123347.5194 92441.76273 107461.7229 0.71821172 0.934622123 0.982661307 1.413142582 1.106583549 1.18309729 1.127526784 1.147827488 0.860229673 1 16.71346335 -4.57791649 1.960585431 1.127999441 0.71864111 0.440772927 0.136820374 0.383669625 2.438784368 0.037820983 0.226260986 2.64E-05 4.57791649 -0.409358331 TLEVVS(ph)PS(ph)QSVTGSAGHTPYYQSPTDEK ddPTM_HeLa_A486_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 T(0.002)LEVVS(0.986)PS(0.302)QS(0.234)VT(0.179)GS(0.14)AGHT(0.021)PY(0.013)Y(0.053)QS(0.07)PT(0.002)DEK 98.37 0.0012723 277310000 181690 181010 123550 30801 152550 195470 194080 185640 167770 174130 TRUE FALSE FALSE 168954.4692 166666.1084 171391.8688 71706.2846 133415.7565 171354.8988 145519.1312 143373.8245 182312.4387 130526.7146 1.294405285 1.276873542 1.313078854 0.549360986 1.022133721 1.312795617 1.114860905 1.098425138 1.396744255 1 16.99398558 TLEVVS(ph)PSQSVT(ph)GSAGHT(ph)PYYQSPTDEK ddPTM_HeLa_A486_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 TLEVVS(0.801)PS(0.161)QS(0.182)VT(0.447)GS(0.41)AGHT(0.439)PY(0.206)Y(0.206)QS(0.139)PT(0.008)DEK 94.48 0.0013368 287760000 313960 308440 161630 93646 231240 327080 373230 352970 259870 429850 TRUE FALSE FALSE 291953.0253 283998.0911 224217.4646 218012.6206 202235.723 286728.1951 279843.9064 272606.4363 282395.7408 322212.7621 0.906087715 0.881399263 0.695867734 0.676610756 0.627646533 0.889872248 0.868506587 0.846044814 0.876426306 1 18.29765411 -6.331143511 24.99887349 0.884819066 0.756483592 0.372768829 0.089314299 218.8939471 78503.66628 0.034525215 0.030448381 4.67E-07 6.331143511 -0.128335474 TLEVVS(ph)PSQSVTGSAGHT(ph)PYYQSPTDEK ddPTM_HeLa_A485_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 T(0.001)LEVVS(0.983)PS(0.019)QS(0.047)VT(0.2)GS(0.034)AGHT(0.393)PY(0.008)Y(0.006)QS(0.298)PT(0.012)DEK 124.79 1.21E-05 274820000 178990 165500 160270 194980 228000 173350 221470 198470 202060 322780 TRUE FALSE FALSE 218805.708 184853.7853 219560.5424 205631.2637 205299.5194 182426.3379 174151.1253 149794.9213 242611.5886 242316.8863 0.902973422 0.762859692 0.906088493 0.848604762 0.847235711 0.752842036 0.71869166 0.618177807 1.001216185 1 17.88653542 -6.174531316 7.832241362 0.788184478 0.851469529 0 0.117786133 0.951995965 76.96443764 0.03762174 0.037637775 6.69E-07 6.174531316 0.063285051 TLEVVS(ph)PSQSVTGSAGHTPYYQS(ph)PTDEK ddPTM_HeLa_A485_30min_R1 2 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 TLEVVS(0.997)PS(0.002)QSVTGSAGHT(0.009)PYYQS(0.99)PT(0.001)DEK;TLEVVS(0.997)PS(0.002)QS(0.001)VTGSAGHTPYYQS(0.986)PT(0.014)DEK ; 234.09 9.97E-50 1363590000 958760 951250 814400 1024930 1288070 885950 1348900 1150750 1105480 1707020 TRUE FALSE FALSE 1172032.854 1062490.413 1115680.45 1080919.331 1159825.228 932336.9721 1060696.496 868526.7582 1327339.696 1281491.329 0.914585083 0.829104644 0.870611002 0.843485481 0.905058974 0.727540601 0.827704777 0.677746886 1.035777352 1 20.28939229 -7.790423832 24.99127269 1.01788912 0.826367237 0.551096805 0.069806432 179.7822327 155009.0149 0.066768995 0.01725115 1.62E-08 7.790423832 -0.191521883 TLEVVS(ph)PSQSVTGSAGHTPYYQS(ph)PTDEK ddPTM_HeLa_A486_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 TLEVVS(0.998)PS(0.001)QSVTGSAGHT(0.023)PYYQS(0.976)PT(0.002)DEK 224.38 1.82E-38 866310000 764920 726270 419970 99229 647640 721790 807910 777840 661010 617870 TRUE FALSE FALSE 711303.0581 668717.7202 582593.6312 231010.1268 566406.9522 632742.8884 605762.3728 600742.8121 718306.879 463151.3303 1.535789733 1.443842814 1.257890441 0.498778934 1.222941434 1.366168781 1.307914569 1.297076728 1.550911834 1 18.82112413 -6.008853154 24.91309582 1.320017653 1.164522557 0.035190881 0.287457366 1428.055817 4018614.534 0.098058869 0.105680436 9.80E-07 6.008853154 -0.155495096 TLEVVS(ph)PSQSVTGSAGHTPYYQSPTDEK ddPTM_HeLa_A485_30min_R1 2 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TLEVVS(0.959)PS(0.017)QS(0.017)VT(0.003)GS(0.003)AGHTPYYQSPTDEK;TLEVVS(0.57)PS(0.297)QS(0.103)VT(0.012)GS(0.018)AGHTPYYQSPTDEK ; 191.23 8.22E-21 1283810000 277316 288737 254477 203186 388119 262012 365518 309394 261883 374259 TRUE FALSE FALSE 339003.9875 322502.2805 348618.632 214285.5367 349476.5096 275730.5432 287422.0933 233514.6364 314440.516 280963.119 1.206578246 1.147845602 1.240798555 0.762682082 1.243851901 0.981376289 1.022988691 0.831122025 1.119152283 1 18.10002124 -5.19108966 24.99999826 0.998448663 1.193351612 0.347363011 0.127972476 183.4310858 65184.56611 0.032981085 0.057124971 6.44E-06 5.19108966 0.19490295 TLEVVSPS(ph)QSVTGSAGHTPYYQS(ph)PTDEK ddPTM_HeLa_A486_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 TLEVVS(0.242)PS(0.368)QS(0.368)VT(0.014)GS(0.017)AGHT(0.042)PY(0.002)Y(0.009)QS(0.933)PT(0.005)DEK 148.91 3.26E-09 730280000 887420 872960 463030 121630 738690 844130 986200 908480 778250 747680 TRUE FALSE FALSE 825216.4406 803783.4703 642327.6164 283160.7868 646036.6122 739989.8231 739442.329 701638.936 845709.3366 560456.0614 1.47240167 1.434159653 1.146080238 0.505232803 1.152698055 1.320335124 1.319358251 1.251907124 1.508966349 1 19.09624175 -6.215266842 6.594634269 1.298277848 1.122276875 0.056563136 0.271710113 0.672722084 76.01968802 0.098325541 0.097533338 6.09E-07 6.215266842 -0.176000973 TLEVVSPSQS(ph)VTGSAGHTPYYQSPTDEK ddPTM_HeLa_A486_30min_R1 2 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TLEVVS(0.079)PS(0.326)QS(0.544)VT(0.019)GS(0.032)AGHTPYYQSPTDEK;TLEVVS(0.324)PS(0.247)QS(0.426)VT(0.002)GS(0.001)AGHTPYYQSPTDEK ; 263.66 1.83E-63 707960000 410700 444470 270663.4 33013 397910 365396.4 431831.8 422085.7 388886.7 290230 TRUE FALSE FALSE 381912.0509 409248.5785 375471.5171 76855.93238 348000.4174 320317.5072 323782.9162 325986.0002 422595.7123 217554.5189 1.755477444 1.881131132 1.725873215 0.353272057 1.599600961 1.472355108 1.48828403 1.498410614 1.942481886 1 17.73101746 -6.907550869 2.269767024 1.53383803 1.449113053 0 0.451010702 3.336049624 34.70443147 0.248821578 0.145524212 1.24E-07 6.907550869 -0.084724978 TLEVVSPSQSVTGSAGHT(ph)PYYQSPTDEK ddPTM_HeLa_A486_30min_R1 2 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TLEVVS(0.017)PS(0.017)QS(0.015)VT(0.055)GS(0.041)AGHT(0.53)PYYQS(0.321)PT(0.004)DEK;TLEVVS(0.015)PS(0.134)QS(0.134)VT(0.134)GS(0.134)AGHT(0.449)PYYQSPTDEK ; 267.05 1.70E-63 3649400000 1216930 1111890 732430 21872.1 984390 979110 1225880 979920 989300 675110 TRUE FALSE FALSE 1131629.491 1023779.787 1016046.511 50919.35415 860918.6271 858317.3631 919151.858 756813.6075 1075053.321 506058.0618 2.236165327 2.023048074 2.007766673 0.100619589 1.701225002 1.696084754 1.816297234 1.495507462 2.124367542 1 18.94894339 TLEVVSPSQSVTGSAGHTPYYQS(ph)PTDEK ddPTM_HeLa_A485_30min_R1 2 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TLEVVSPSQSVTGSAGHT(0.022)PYYQS(0.973)PT(0.005)DEK;TLEVVSPSQSVTGSAGHT(0.003)PYYQS(0.985)PT(0.012)DEK ; 208.06 7.84E-29 2673800000 960640 1047140 861740 681130 1288130 788270 1218520 928230 1018120 1384160 TRUE FALSE FALSE 1174331.054 1169593.914 1180533.486 718338.4072 1159879.254 829542.5983 958173.2476 700580.1371 1222447.345 1039114.386 1.130126837 1.125568013 1.136095797 0.691298684 1.116219033 0.798316922 0.922105652 0.674208871 1.176431933 1 19.98692304 -5.209944388 24.56372821 0.901941344 1.130094293 0.296534744 0.154372623 330.154504 157486.8067 0.038916759 0.067405704 6.17E-06 5.209944388 0.228152949 TLFGLHLSQKR ddPTM_HeLa_A485_30min_R1 1 TLFGLHLSQKR 11 1 P31939-2;P31939;H7C1S2 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 0 119.76 0.00060782 8587900 3721 15748 9808.1 1248.8 12321 12718 15532 29964 7045.2 3445.5 FALSE FALSE TRUE 4548.723613 17589.59161 13436.52434 1317.018782 11094.27798 13383.89481 12213.46132 22615.28202 8459.107018 2586.60026 1.758572317 6.800274431 5.194665967 0.509169817 4.289135106 5.174318979 4.721820184 8.743245862 3.270357291 1 11.3368414 -6.004856647 24.97156997 5.036541701 3.723831191 0.019650765 2.430944515 690.5483262 3550639.522 0.760522204 0.839919342 9.89E-07 6.004856647 -1.31271051 TLFPLIEAK ddPTM_HeLa_A486_30min_R1 1 TLFPLIEAK 9 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 105.78 0.0056083 0 48273 52368 35242 31309 80427 55721 65522 58442 41422 55799 FALSE FALSE TRUE 44889.31198 48218.16896 48888.64621 72888.93427 70339.09571 48846.70955 49127.70258 45136.03238 45012.49231 41826.56721 1.073224866 1.152812009 1.168841946 1.742646818 1.681684642 1.167839314 1.174557365 1.079123519 1.076169892 1 15.35213198 -6.502573722 23.45208017 1.100790756 1.368572803 0.294756741 0.206959387 529.9768707 612119.5244 0.083516221 0.072632378 3.14E-07 6.502573722 0.267782047 TLGT(ph)PTQPGSTPR ddPTM_HeLa_A485_30min_R1 3 TLGTPTQPGSTPR 13 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 TLGT(0.991)PT(0.009)QPGSTPR;TLGT(0.997)PT(0.003)QPGSTPR;TLGT(1)PTQPGSTPR ;; 190.06 9.29E-17 1307200000 904700 1053960 1098590 968250 1454280 1044610 1367060 1437450 1053820 1241980 TRUE FALSE FALSE 1105947.394 1177211.454 1505004.157 1021143.046 1309486.777 1099304.164 1074976.463 1084913.134 1265312.008 932377.2429 1.186158717 1.262591363 1.614157969 1.095203742 1.404460251 1.179033672 1.152941549 1.163598899 1.357081608 1 19.83055427 -6.292334076 22.4609964 1.179656616 1.314426053 0.178546371 0.151615043 376.672289 273845.0312 0.052121756 0.045976782 5.10E-07 6.292334076 0.134769437 TLGT(ph)PTQPGSTPR ddPTM_HeLa_A486_30min_R1 1 TLGTPTQPGSTPR 13 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 TLGT(0.997)PT(0.003)QPGSTPR 120.53 0.00042847 542030000 336730 376980 288080 123670 449010 318040 380940 400130 313200 382780 TRUE FALSE FALSE 313126.9659 347106.7319 399632.291 287910.0099 392690.9789 278803.4584 285624.7828 309029.1338 340348.4282 286929.3965 1.091303191 1.209728721 1.392789641 1.003417612 1.368597933 0.97167966 0.995453189 1.077021517 1.18617483 1 18.13033626 -6.280377901 24.99352099 1.047716394 1.211302641 0.323197651 0.120878992 1037.684865 1369447.933 0.041618045 0.036759771 5.24E-07 6.280377901 0.163586247 TLGTVT(ph)PR ddPTM_HeLa_A485_30min_R1 1 TLGTVTPR 8 0 H0YKY0;H0YN33;Q9BW66-2;Q9BW66;Q9BW66-3 H0YKY0 CINP Cyclin-dependent kinase 2-interacting protein 1 0 TLGT(0.002)VT(0.998)PR 85.764 0.0096532 0 187460 216200 215340 204490 307440 238530 285260 315320 211080 285260 TRUE FALSE FALSE 229159.8303 241482.7093 295003.227 215660.7709 276830.1941 251019.062 224311.8706 237987.2756 253441.8199 214149.9318 1.070090606 1.127633837 1.377554616 1.007055053 1.292693356 1.172165033 1.047452449 1.11131147 1.183478406 1 17.70826169 -6.670570327 8.143931987 1.095041917 1.179872686 0.137706532 0.107638817 0.544520978 42.86988992 0.040205462 0.031048163 2.14E-07 6.670570327 0.084830769 TLGTVT(ph)PR ddPTM_HeLa_A486_30min_R1 1 TLGTVTPR 8 0 H0YKY0;H0YN33;Q9BW66-2;Q9BW66;Q9BW66-3 H0YKY0 CINP Cyclin-dependent kinase 2-interacting protein 1 0 TLGT(0.001)VT(0.999)PR 90.263 0.0068105 0 262890 299450 241230 91606 335800 301440 308530 321860 261630 286810 TRUE FALSE FALSE 244462.7686 275720.4914 334640.7164 213263.3975 293680.8328 264251.3976 231332.5307 248579.5042 284308.2991 214990.9092 1.137084212 1.282475117 1.556534263 0.991964722 1.366015121 1.229128239 1.076010756 1.156232629 1.322420097 1 17.71391613 -6.534832436 21.91172672 1.151811392 1.271416884 0.128473538 0.156339733 118.1725944 216607.2353 0.058540008 0.045408725 2.92E-07 6.534832436 0.119605492 TLHCEGTEINS(ph)DDEQESK ddPTM_HeLa_A485_30min_R1 3 TLHCEGTEINSDDEQESK 18 0 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGTEINS(0.999)DDEQESK;TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK ;; 323.79 5.03E-90 3673140000 894350 569061 446080 1600120 719589 739750 1290220 975650 561646 2285090 TRUE FALSE FALSE 1093295.072 635607.7338 611103.5549 1687530.504 647944.1925 778482.1661 1014553.957 736370.3077 674363.2005 1715459.117 0.637319223 0.370517564 0.356233237 0.983719453 0.37770891 0.453803975 0.591418325 0.429255527 0.393109456 1 20.71016331 -10.14330804 4.420578915 1.00006433 0.510056294 0.394507974 0.181986398 122433823.3 15.7217597 99690.60822 0.043623193 7.19E-11 10.14330804 -0.490008036 TLHCEGTEINS(ph)DDEQESK ddPTM_HeLa_A486_30min_R1 4 TLHCEGTEINSDDEQESK 18 0 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK ;;; 393.09 1.01E-145 16351560000 3506660 3740650 1808279 1354485 2594340 3721780 4428240 3881580 2858670 5293170 TRUE FALSE FALSE 3260861.242 3444227.271 2508493.056 3153309.532 2268933.686 3262624.624 3320247.515 2997828.968 3106461.817 3967725.779 0.821846424 0.868060814 0.632224402 0.794739785 0.571847404 0.822290855 0.836813757 0.755553467 0.782932589 1 21.91988089 -9.434825473 0.560738888 1.032280736 0.754370534 0.392880401 0.088211107 9.737140108 2.660540275 0.730107262 0.039383963 3.67E-10 9.434825473 -0.277910201 TLHCEGTEINS(ph)DDEQESKEVEETATAK ddPTM_HeLa_A485_30min_R1 7 TLHCEGTEINSDDEQESKEVEETATAK 27 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGT(0.001)EINS(0.997)DDEQES(0.002)KEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(0.999)DDEQES(0.001)KEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK ;;;;;; 400.56 1.77E-204 18772770000 2037851 1260589 1081239 4182570 3012980 2213260 4524190 3990370 1900360 6015730 TRUE FALSE FALSE 2491163.924 1408003.918 1481234.3 4411053.208 2712997.132 2329142.871 3557559.847 3011725.501 2281744.821 4516119.222 0.551616067 0.311772973 0.327988308 0.976735332 0.600736384 0.515739899 0.787747106 0.666883524 0.505244594 1 22.10665214 -14 0.061694382 2.406939844 1.83E-12 0.343095329 0.183244058 467.3156419 2.096720738 99.6723259 15.78041703 1.00E-14 14 -2.406939844 TLHCEGTEINS(ph)DDEQESKEVEETATAK ddPTM_HeLa_A486_30min_R1 11 TLHCEGTEINSDDEQESKEVEETATAK 27 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(0.999)DDEQES(0.001)KEVEETATAK;TLHCEGTEINS(0.989)DDEQES(0.011)KEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(0.999)DDEQES(0.001)KEVEETATAK;TLHCEGTEINS(0.998)DDEQES(0.002)KEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK ;;;;;;;;;; 386.56 1.36E-187 17826290000 1807960 1889167 879338 1510933 2065230 2771058 3953353 3700947 1518682 3811460 TRUE FALSE FALSE 1681231.34 1739462.527 1219841.223 3517528.382 1806189.596 2429193.038 2964182.265 2858322.159 1650322.579 2857045.608 0.588450998 0.608832607 0.426958961 1.23117684 0.632187877 0.850246503 1.037499107 1.000446808 0.577632564 1 21.44609264 -5.236544916 24.97995636 0.8961646 0.548156011 0.442719642 0.18631002 731.5735411 734085.0432 0.049088368 0.08497598 5.80E-06 5.236544916 -0.348008589 TLHLQTGNLLNWGR ddPTM_HeLa_A485_30min_R1 2 TLHLQTGNLLNWGR 14 0 P48507-2;P48507 P48507-2 GCLM Glutamate--cysteine ligase regulatory subunit 0 0 ; ; 259.68 1.62E-40 294990000 270410 345080 330130 284040 424570 315400 436670 434520 278300 401550 FALSE FALSE TRUE 330561.7716 385434.1042 452258.8249 299556.386 382298.32 331913.8563 343371.8872 327953.2887 334152.2573 301450.975 1.096568925 1.27859631 1.50027322 0.993715101 1.268194008 1.101054181 1.139063781 1.087915833 1.108479604 1 18.20156387 -6.657628675 0.494576819 1.025941742 1.268203487 0.252457997 0.125450046 1.395198943 0.736772409 0.121670454 0.119019887 2.20E-07 6.657628675 0.242261745 TLHLQTGNLLNWGR ddPTM_HeLa_A486_30min_R1 2 TLHLQTGNLLNWGR 14 0 P48507-2;P48507 P48507-2 GCLM Glutamate--cysteine ligase regulatory subunit 0 0 ; ; 294.31 1.21E-65 318960000 438680 438660 358710 135411 496890 395010 512190 507730 409090 494820 FALSE FALSE TRUE 407930.7973 403898.984 497612.1186 315243.6513 434565.4229 346277.6824 384034.6446 392130.9627 444550.2506 370913.8513 1.099799309 1.088929364 1.341584082 0.849910701 1.171607427 0.933579809 1.035374234 1.057202262 1.19852696 1 18.50072462 -5.257241583 24.99985258 1.039015332 1.167986743 0.239272142 0.115240493 567.6966724 3380889.709 0.030548199 0.0504715 5.53E-06 5.257241583 0.128971411 TLHNLVIQYASQGR ddPTM_HeLa_A485_30min_R1 1 TLHNLVIQYASQGR 14 0 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;A8MX29;E9PQ02;Q9H0B6;Q9H0B6-2;A8MZ87 Q07866-4;Q9H0B6 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 0 0 118.47 0.0001374 10099000 29345 33874 41996 31963 59725 32355 39034 43479 34356 42804 FALSE FALSE TRUE 35872.69401 37835.26964 57532.068 33709.05776 53778.56929 34049.05777 30694.06702 32815.70708 41250.93407 32133.75055 1.116355651 1.177430863 1.790393808 1.049023447 1.673585199 1.059604223 0.955197152 1.021222438 1.283726094 1 14.97180176 -6.429738874 24.9966988 1.058304104 1.358521987 0.29063808 0.232212514 73.67482813 19768.306 0.079534728 0.070143016 3.72E-07 6.429738874 0.300217883 TLHPAVHAGILAR ddPTM_HeLa_A485_30min_R1 2 TLHPAVHAGILAR 13 0 P31939-2;P31939;C9JLK0 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 0 ; ; 125.82 0.00013234 77020000 67304 78644 80401 69119 103887 91129 111022 122036 71553 90522 FALSE FALSE TRUE 82275.5426 87840.73169 110144.6757 72894.79595 93543.64551 95900.37353 87301.24273 92106.47965 85913.03078 67956.53133 1.210708389 1.292601755 1.620810737 1.072667991 1.376521781 1.411201714 1.284663019 1.35537347 1.264235079 1 16.0523246 -8.177866052 3.327967899 1.000024567 1.33076714 0.350768217 0.13342199 1.067847043 18.1945822 0.124242996 0.032921659 6.64E-09 8.177866052 0.330742573 TLHPAVHAGILAR ddPTM_HeLa_A486_30min_R1 2 TLHPAVHAGILAR 13 0 P31939-2;P31939;C9JLK0 P31939-2 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 0 ; ; 102.62 0.0011596 51615000 39222 42075 33285 11142.9 45955 43170 43286 44618 39451 45783 FALSE FALSE TRUE 36472.74034 38740.82377 46173.8434 25941.23433 40190.89539 37844.12432 32455.38497 34459.4554 42870.64444 34318.6388 1.062767686 1.128856654 1.34544507 0.755893451 1.171109834 1.102728011 0.945707234 1.004103211 1.249194197 1 15.06670471 -5.222035721 24.9993769 1.037910287 1.174006361 0.181956703 0.141775618 996.2646657 632071.9534 0.037676388 0.06525659 6.00E-06 5.222035721 0.136096073 TLHPDLGTDKDKEQWK ddPTM_HeLa_A485_30min_R1 2 TLHPDLGTDKDKEQWK 16 2 P00338;P00338-3;P00338-2;P00338-5;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 183.6 8.98E-18 778223000 1035346 620708 341832 1754450 948714 986746 1842060 1520830 718160 2413970 FALSE FALSE TRUE 1265655.146 693294.4012 468289.8816 1850291.161 854256.703 1038410.495 1448488.833 1147844.058 862288.1246 1812211.705 0.698403582 0.382568107 0.258407933 1.021012697 0.471389022 0.573007277 0.799293388 0.633394021 0.475820856 1 20.78932007 -14 0.191652319 2.724585718 0.519837075 0.253272066 0.207140756 197.5480247 1.936103048 130.7098662 0.558173923 1.00E-14 14 -2.204748642 TLHPDLGTDKDKEQWK ddPTM_HeLa_A486_30min_R1 2 TLHPDLGTDKDKEQWK 16 2 P00338;P00338-3;P00338-2;P00338-5;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 160.47 6.44E-12 1479750000 670990 496520 218792 398810 536840 854390 974160 992560 433070 1364380 FALSE FALSE TRUE 623957.066 457173.9469 303514.1219 928449.8347 469504.5214 748984.0486 730414.8644 766575.7554 470608.8563 1022730.367 0.610089507 0.447013173 0.296768466 0.907814869 0.459069698 0.732337743 0.714181262 0.749538471 0.460149489 1 19.96399441 -14 0.098339762 2.206084919 0.333453807 0.334441285 0.172739275 219.2990261 1.470038145 55.11847658 3.043884831 1.00E-14 14 -1.872631112 TLHS(ph)PPLQLQQR ddPTM_HeLa_A485_30min_R1 3 TLHSPPLQLQQR 12 0 A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1 A0A2R8YGT1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 0 T(0.001)LHS(0.999)PPLQLQQR;TLHS(1)PPLQLQQR;T(0.009)LHS(0.991)PPLQLQQR ;; 155.57 4.23E-08 1255300000 1165800 1552940 1256660 1134510 1880100 1880070 2548770 3394300 1453040 1817130 TRUE FALSE FALSE 1425128.188 1734542.824 1721550.828 1196485.409 1692910.643 1978507.558 2004204.468 2561842.603 1744651.8 1364152.933 1.044698255 1.271516399 1.261992542 0.877090376 1.240997693 1.450356122 1.469193387 1.877973167 1.27892684 1 20.37957396 -6.177668018 3.618808221 1.475698156 1.129188755 0.252414993 0.232058475 0.289671181 7.234139344 0.078607908 0.077661241 6.64E-07 6.177668018 -0.346509401 TLHS(ph)PPLQLQQR ddPTM_HeLa_A486_30min_R1 4 TLHSPPLQLQQR 12 0 A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1 A0A2R8YGT1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 0 T(0.001)LHS(0.999)PPLQLQQR;TLHS(1)PPLQLQQR;T(0.001)LHS(0.999)PPLQLQQR;T(0.004)LHS(0.996)PPLQLQQR ;;; 171.46 9.12E-11 1865200000 1216198 1080418 806295 423055 1341696 1070422 1406288 1413689 1008132 1393111 TRUE FALSE FALSE 1130948.801 994801.7429 1118514.017 984893.42 1173407.977 938364.2169 1054419.868 1091822.875 1095517.693 1044266.938 1.08300738 0.952631656 1.071099713 0.943143352 1.123666693 0.898586542 1.009722543 1.04554002 1.049078213 1 19.99405911 -7.243151745 20.46531106 1.03548181 1.009026962 0.016432815 0.066130202 318.0492559 355924.2636 0.02926733 0.016811082 5.71E-08 7.243151745 -0.026454847 TLHTTASNWLHLIPQTLSHLK ddPTM_HeLa_A485_30min_R1 1 TLHTTASNWLHLIPQTLSHLK 21 0 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 188.19 1.16E-23 12798000 13565 14346 14853 7683.7 18598 9572.4 18482 13681 10535 18045 FALSE FALSE TRUE 16582.48745 16023.63991 20347.74278 8103.441075 16746.31782 10073.59606 14533.16972 10325.7133 12649.27787 13546.71359 1.224096703 1.182843337 1.502042739 0.598185015 1.236190439 0.743619181 1.072818851 0.762230133 0.933752513 1 13.72565528 -5.251945141 24.99043112 0.910635288 1.290979156 0.485418463 0.186833707 561.8847602 1478972.163 0.047149046 0.080327422 5.60E-06 5.251945141 0.380343868 TLHTTASNWLHLIPQTLSHLKR ddPTM_HeLa_A485_30min_R1 2 TLHTTASNWLHLIPQTLSHLKR 22 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 155.86 4.08E-14 109552000 58238 99349 76677 36822 87284 66171 110901 122012 51576 79195 FALSE FALSE TRUE 71192.84218 110967.0013 105043.0131 38833.49262 78593.69849 69635.61124 87206.09537 92088.36569 61926.83012 59453.14398 1.197461352 1.86646145 1.766820156 0.653178117 1.321943521 1.171268777 1.466803764 1.548923396 1.041607323 1 15.85946548 -1.000000001 0.07452208 0.763319911 2.711988254 0.115464653 0.330003358 544.4048104 2.985542653 12.76112728 110.2168924 0.1 1.000000001 1.948668343 TLHTTASNWLHLIPQTLSHLKR ddPTM_HeLa_A486_30min_R1 2 TLHTTASNWLHLIPQTLSHLKR 22 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 146.15 9.76E-13 110861000 117131 113426 100797 68427 127791 110297 143194 137579 96094 178568 FALSE FALSE TRUE 108920.7218 104437.7107 139828.2978 159301.5141 111762.2612 96689.67756 107365.3466 106255.265 104423.5053 133853.4105 0.81373139 0.780239445 1.044637543 1.190119202 0.834960131 0.722354979 0.802111401 0.793818137 0.780133318 1 17.03029437 -5.976674818 24.99734935 0.802694243 0.958508707 0.209928561 0.126401772 349.6379077 374701.4463 0.041656254 0.047231362 1.06E-06 5.976674818 0.155814463 TLIPS(ph)PPPRPK ddPTM_HeLa_A485_30min_R1 3 TLIPSPPPRPK 11 1 J3KSG3;J3KSS7;Q9NZ52-3;Q9NZ52-4;Q9NZ52-2;Q9NZ52 J3KSG3 GGA3 ADP-ribosylation factor-binding protein GGA3 1 0 T(0.06)LIPS(0.94)PPPRPK;TLIPS(1)PPPRPK;T(0.001)LIPS(0.999)PPPRPK ;; 94.688 0.0010385 2482270000 1485640 1584800 1333350 1599190 2053720 1702330 2368700 2365080 1385430 2219490 TRUE FALSE FALSE 1816115.493 1770128.574 1826611.65 1686549.7 1849244.426 1791461.366 1862607.895 1785040.422 1663473.093 1666211.99 1.089966645 1.062366965 1.096266058 1.012205956 1.109849429 1.075170133 1.117869698 1.071316515 0.998356214 1 20.66814053 -7.741941839 5.402189987 0.997845263 1.079675696 0.574847793 0.027651119 0.113342302 9.426208748 0.021423799 0.006907513 1.81E-08 7.741941839 0.081830432 TLIPS(ph)PPPRPK ddPTM_HeLa_A486_30min_R1 3 TLIPSPPPRPK 11 1 J3KSG3;J3KSS7;Q9NZ52-3;Q9NZ52-4;Q9NZ52-2;Q9NZ52 J3KSG3 GGA3 ADP-ribosylation factor-binding protein GGA3 1 0 TLIPS(1)PPPRPK;T(0.008)LIPS(0.992)PPPRPK;T(0.005)LIPS(0.995)PPPRPK ;; 105 0.00036568 1928790000 1698940 1611390 1016930 675690 1737800 1632890 1958040 1933400 1349750 1970750 TRUE FALSE FALSE 1579853.079 1483697.588 1410712.53 1573040.467 1519828.92 1431440.634 1468117.682 1493207.026 1466747.417 1477261.373 1.069447228 1.004356856 0.954951207 1.064835578 1.028815176 0.968982646 0.993810377 1.010794064 0.992882806 1 20.49449367 -6.234318424 24.65542564 0.994000876 1.021742323 0.194709517 0.031450468 1253.421551 1139475.117 0.01075525 0.010752064 5.83E-07 6.234318424 0.027741446 TLK(ac)IPAMTIAK ddPTM_HeLa_A485_30min_R1 2 TLKIPAMTIAK 11 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; TLK(1)IPAMTIAK;TLK(1)IPAMTIAK 149.49 0.0011166 53584000 154813 168916 147717 160112 182315 204520 246130 262290 141035 287590 FALSE TRUE FALSE 189250.6178 188669.2568 202363.6653 168858.5131 164163.0785 215228.351 193542.3148 197962.9662 169339.4309 215899.1057 0.876569716 0.873876972 0.93730664 0.782117705 0.760369423 0.996893203 0.896447969 0.916923512 0.784345217 1 17.71999774 -6.263737303 24.99991403 0.912325069 0.849112374 0.197115886 0.072800931 428.1985776 4658495.555 0.025725356 0.023783627 5.45E-07 6.263737303 -0.063212695 TLK(ac)IPAMTIAK ddPTM_HeLa_A486_30min_R1 1 TLKIPAMTIAK 11 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 TLK(1)IPAMTIAK 133.05 0.0043247 22469000 37835 47253 37337 19233 56318 51070 61266 62162 55511 61941 FALSE TRUE FALSE 35182.96188 43508.50019 51794.88632 44775.39598 49254.0713 44769.50264 45936.59879 48009.06959 60322.73818 46430.57043 0.757754246 0.937065812 1.115534137 0.964351624 1.060811247 0.964224696 0.989361069 1.03399698 1.299203038 1 15.50278739 -4.393738186 2.915222672 1.046141975 0.744430092 0.480504946 0.094399257 0.274261887 3.739928961 0.024313634 0.163715355 4.04E-05 4.393738186 -0.301711883 TLKPTYRT(ph)PER ddPTM_HeLa_A485_30min_R1 1 TLKPTYRTPER 11 2 H0Y9P1;Q9NSY1;Q5H9B9 H0Y9P1 BMP2K;BMP2KL BMP-2-inducible protein kinase;Putative BMP-2-inducible kinase-like protein 1 0 T(0.002)LKPT(0.093)YRT(0.904)PER 45.207 0.012048 0 153550 191420 179870 172020 225300 197410 249770 265920 191330 271530 TRUE FALSE FALSE 187706.6678 213804.9039 246411.398 181417.017 202868.3409 207746.0823 196404.5991 200702.7031 229728.176 203842.5681 0.92084136 1.048872695 1.208831895 0.889985927 0.995220688 1.019149652 0.963511208 0.984596617 1.126988235 1 17.63709583 -1.000680845 9.460046905 1.016226772 0.000342991 0 0.089419362 0 0 0.020333902 0 0.099843352 1.000680845 -1.015883781 TLLALEGDGLVRS(ph)PEDPSR ddPTM_HeLa_A486_30min_R1 1 TLLALEGDGLVRSPEDPSR 19 1 O95425-3;O95425;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 T(0.001)LLALEGDGLVRS(0.997)PEDPS(0.002)R 50.055 0.019637 61754000 52587 64812 40969 16302 52545 54568 52760 52452 50364 54855 TRUE FALSE FALSE 48900.92286 59676.06108 56833.29399 37951.87986 45954.31614 47835.95497 39558.88996 40509.82462 54729.59207 41118.95095 1.189255118 1.451303102 1.382167898 0.922977824 1.117594566 1.163355432 0.962059806 0.985186238 1.331006526 1 15.32751584 -5.24614133 24.94971268 1.069780717 1.351948177 0.489437919 0.127167394 641.0466725 1045486.526 0.033807402 0.058284801 5.67E-06 5.24614133 0.28216746 TLLGFFLAK ddPTM_HeLa_A485_30min_R1 2 TLLGFFLAK 9 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 0 ; ; 160.75 1.18E-05 3119900 7133.5 8658.7 8069.7 11246.7 13831.5 7663.3 10432.9 10976.2 7186.6 15931.3 FALSE FALSE TRUE 8720.322465 9671.259644 11055.01784 11861.07874 12454.38729 8064.538538 8203.825686 8284.26974 8628.884701 11959.9201 0.729128823 0.808639151 0.92433877 0.991735617 1.041343687 0.674297024 0.685943185 0.692669321 0.721483474 1 13.54592013 -6.280461503 24.76061362 0.731361966 0.900570662 0.252457508 0.120671919 928.5132799 1208618.1 0.043513454 0.038437308 5.24E-07 6.280461503 0.169208696 TLLGFFLAK ddPTM_HeLa_A486_30min_R1 1 TLLGFFLAK 9 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 0 116.37 0.0060023 3497000 3659.9 3778 2951.5 1487.5 3210.2 3929.5 3783 3360 3075.2 4952.9 FALSE FALSE TRUE 3403.35991 3478.617521 4094.399844 3462.975174 2807.546782 3444.718242 2836.453388 2595.001348 3341.760812 3712.661602 0.916690039 0.936960567 1.10282064 0.932747324 0.75620864 0.927829846 0.763994592 0.698959837 0.900098412 1 11.85823811 -5.569300386 6.96268928 0.827486893 0.986736822 0.315261325 0.095721846 0.213959139 25.01323287 0.027870952 0.03624881 2.70E-06 5.569300386 0.15924993 TLLIS(ph)SLSPALPAEHLEDR ddPTM_HeLa_A485_30min_R1 1 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 T(0.054)LLIS(0.315)S(0.315)LS(0.315)PALPAEHLEDR 54.223 0.023588 79398000 46928 56311 56951 45292 72223 53842 65710 69310 51678 62396 TRUE FALSE FALSE 57366.9717 62896.08161 78019.54483 47766.18727 65032.22453 56661.08386 51670.5217 52311.61383 62049.30058 46841.82551 1.224695474 1.342733357 1.665595736 1.019733684 1.38833668 1.209625868 1.103085141 1.116771459 1.324655901 1 15.51550968 -6.004432806 0.985862012 1.144477196 1.370521209 0.220937425 0.167948393 0.849737409 1.783745526 0.085933363 0.102061202 9.90E-07 6.004432806 0.226044013 TLLISSLS(ph)PALPAEHLEDR ddPTM_HeLa_A485_30min_R1 3 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TLLIS(0.024)S(0.003)LS(0.974)PALPAEHLEDR;TLLIS(0.023)S(0.004)LS(0.973)PALPAEHLEDR;TLLISSLS(1)PALPAEHLEDR ;; 265.05 1.58E-58 258253000 106050 143836 144807 108099 183963 134556 161762 176280 122742 152754 TRUE FALSE FALSE 129640.4566 160656.369 198377.1352 114004.1746 165646.9978 141601.1441 127200.2272 133047.0536 147375.1935 114675.239 1.130500863 1.40096825 1.72990383 0.994148132 1.444487922 1.234801386 1.109221383 1.160207336 1.285152704 1 16.80719439 -6.346702562 0.969586882 1.138909983 1.370218606 0.17802076 0.194978658 0.987043613 1.954074488 0.119079057 0.099952175 4.50E-07 6.346702562 0.231308623 TLLISSLS(ph)PALPAEHLEDR ddPTM_HeLa_A486_30min_R1 3 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TLLIS(0.003)S(0.004)LS(0.994)PALPAEHLEDR;TLLIS(0.021)S(0.003)LS(0.976)PALPAEHLEDR;TLLIS(0.002)SLS(0.997)PALPAEHLEDR ;; 228.62 3.20E-35 298268000 123974 129671 106266 43650 145482 114941 140558 142074 119245 130860 TRUE FALSE FALSE 115284.0628 119395.3977 147415.0411 101619.4059 127234.291 100760.7481 105388.9017 109726.8517 129581.2526 98091.80424 1.175267023 1.217180157 1.502827298 1.035962247 1.297094003 1.027208632 1.074390491 1.118613859 1.321020177 1 16.58184498 -5.294292256 24.99980254 1.130840641 1.290300588 0.272353665 0.12951923 882.9329338 671876.811 0.035966272 0.053350665 5.08E-06 5.294292256 0.159459947 TLLLS(ph)SDDEF ddPTM_HeLa_A485_30min_R1 1 TLLLSSDDEF 10 0 A0A0J9YYJ3;Q9Y519 A0A0J9YYJ3 TMEM184B Transmembrane protein 184B 1 0 TLLLS(0.591)S(0.409)DDEF 87.616 0.0021791 0 27146 26910 23940 32185 32976 29067 42793 37984 26318 51025 TRUE FALSE FALSE 33184.53405 30056.89041 32796.40223 33943.18505 29692.79365 30588.90317 33649.92596 28668.36444 31599.7812 38305.40655 0.866314629 0.784664441 0.856182069 0.886119953 0.77515934 0.798553153 0.878464139 0.748415616 0.82494311 1 15.22526041 -9.512414415 7.161520105 0.999985658 0.823059061 0.581786446 0.044675317 0 0 0.042516669 0.010311807 3.07E-10 9.512414415 -0.176926597 TLLLSS(ph)DDEF ddPTM_HeLa_A485_30min_R1 1 TLLLSSDDEF 10 0 A0A0J9YYJ3;Q9Y519 A0A0J9YYJ3 TMEM184B Transmembrane protein 184B 1 0 TLLLS(0.075)S(0.925)DDEF 85.064 0.004427 4290100 23116 25511 21450 25131 28186 21903 29113 30217 21914 45391 TRUE FALSE FALSE 28258.07445 28494.28953 29385.24761 26503.84289 25379.70287 23049.80721 22892.76972 22806.23337 26311.93879 34075.85906 0.829269613 0.836201649 0.862347962 0.777789427 0.744800089 0.676426298 0.671817831 0.66927831 0.772157754 1 15.05646241 -5.519632685 2.801191473 0.730983116 0.841690972 0.117073957 0.092353993 0.404891769 6.418508646 0.026974423 0.039530267 3.02E-06 5.519632685 0.110707856 TLLLSS(ph)DDEF ddPTM_HeLa_A486_30min_R1 1 TLLLSSDDEF 10 0 A0A0J9YYJ3;Q9Y519 A0A0J9YYJ3 TMEM184B Transmembrane protein 184B 1 0 TLLLS(0.086)S(0.914)DDEF 72.485 0.0067474 0 27709 29083 23100 12689 35665 29406 30766 30750 29486 38105 TRUE FALSE FALSE 25766.74219 26778.35716 32044.93864 29540.63327 31191.56314 25778.1867 23068.02139 23748.89627 32041.87022 28563.25998 0.902093886 0.937510536 1.121893603 1.034217848 1.092016918 0.902494558 0.807611645 0.831449081 1.121786177 1 14.80187303 -6.284927906 24.0622691 0.914317802 1.019823358 0.134108583 0.102591845 862.2474107 883305.0804 0.037376833 0.032984355 5.19E-07 6.284927906 0.105505556 TLLS(ph)PSGR ddPTM_HeLa_A486_30min_R1 2 TLLSPSGR 8 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 T(0.01)LLS(0.971)PS(0.019)GR;T(0.026)LLS(0.878)PS(0.096)GR ; 112.95 0.00099945 0 216245 245660 207869 82059 282700 220289 249499 247990 208856 244927 TRUE FALSE FALSE 201087.3422 226193.0069 288361.4437 191037.499 247241.1299 193111.9829 187071.7113 191528.0906 226959.8062 183595.685 1.095272703 1.23201701 1.570633012 1.040533709 1.346660897 1.051832906 1.01893305 1.043205839 1.236193575 1 17.48617263 -6.274556012 24.55525336 1.069539672 1.261029762 0.287624723 0.147071359 824.0219122 1542622.312 0.051306042 0.045527682 5.31E-07 6.274556012 0.19149009 TLLSESSSQSSKS(ph)PSLSSK ddPTM_HeLa_A485_30min_R1 4 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 TLLSESSS(0.001)QS(0.005)S(0.023)KS(0.955)PS(0.015)LSS(0.001)K;TLLSESSSQSS(0.009)KS(0.979)PS(0.011)LSSK;TLLSESSSQSS(0.003)KS(0.997)PSLSSK;TLLSESSSQSS(0.004)KS(0.995)PSLSSK ;;; 334.08 2.69E-102 8515570000 1638890 1344950 862240 2272310 2023300 1767690 2957980 2718040 1379570 3322990 TRUE FALSE FALSE 2003455.426 1502230.203 1181218.457 2396440.542 1821853.148 1860243.515 2325983.409 2051436.428 1656437.045 2494629.748 0.803107326 0.602185637 0.473504518 0.960639768 0.730310039 0.745699243 0.932396244 0.822341043 0.664001159 1 21.25039428 -5.26396478 24.99861111 0.824871208 0.623857811 0.369124647 0.125286327 246.7627045 2442678.096 0.034474427 0.053933573 5.45E-06 5.26396478 -0.201013396 TLLSESSSQSSKS(ph)PSLSSK ddPTM_HeLa_A486_30min_R1 4 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 TLLSESSSQSS(0.011)KS(0.981)PS(0.008)LSSK;TLLSESSSQS(0.009)S(0.002)KS(0.982)PS(0.006)LSSK;TLLSESSSQS(0.001)S(0.056)KS(0.943)PS(0.001)LSSK;TLLS(0.008)ES(0.008)S(0.008)S(0.034)QS(0.051)S(0.178)KS(0.639)PS(0.066)LS(0.006)S(0.002)K ;;; 313.16 7.18E-90 6735620000 2480660 2153890 1064175 1146750 2139530 2682770 3279220 3346820 1834920 3518940 TRUE FALSE FALSE 2306778.544 1983207.912 1476252.06 2669691.954 1871170.197 2351797.114 2458724.472 2584822.147 1993972.343 2637774.52 0.874516956 0.751848916 0.55965817 1.012100137 0.709374582 0.891583832 0.932120791 0.97992536 0.755929792 1 21.33088982 -6.101522406 1.057177408 0.918151671 0.759192632 0.195165001 0.125974946 0.832565599 1.975009832 0.063606557 0.067321524 7.92E-07 6.101522406 -0.15895904 TLLTGDGGGEATGS(ph)PLAQGK ddPTM_HeLa_A485_30min_R1 1 TLLTGDGGGEATGSPLAQGK 20 0 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TLLTGDGGGEAT(0.021)GS(0.979)PLAQGK 209.85 2.40E-28 0 71039 80158 66892 123390 119350 85283 123260 109260 82896 144420 TRUE FALSE FALSE 86841.38047 89531.78082 91638.13441 130130.4833 107467.0949 89748.28601 96924.49406 82463.81369 99532.46683 108418.7519 0.800981186 0.825796085 0.84522403 1.200258083 0.991222396 0.82779302 0.893982751 0.760604713 0.918037379 1 16.72625478 -9.466295107 22.78164753 1 0.898134706 0.064041918 0.119033979 0 0 0.12460322 0.03022072 3.42E-10 9.466295107 -0.101865294 TLLTGDGGGEATGS(ph)PLAQGK ddPTM_HeLa_A486_30min_R1 1 TLLTGDGGGEATGSPLAQGK 20 0 A0A494BZV2;H0Y2S9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1;H0Y7E2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TLLTGDGGGEATGS(1)PLAQGK 379.94 1.14E-142 245690000 285970 299210 166070 94013 249250 269590 327210 322740 197080 317680 TRUE FALSE FALSE 265924.9798 275499.5099 230376.7515 218867.0152 217986.7408 236330.7268 245338.5971 249259.1474 214163.0531 238130.8603 1.116717839 1.156924851 0.967437615 0.919103954 0.915407355 0.99244057 1.030267966 1.046731814 0.899350268 1 17.86139507 -4.764723974 24.9999909 0.972006066 1.136821377 0.662785029 0.047211978 47.62802346 362522.75 0.013223675 0.029482668 1.72E-05 4.764723974 0.164815311 TLMLPLTEGS(ph)LR ddPTM_HeLa_A485_30min_R1 5 TLMLPLTEGSLR 12 0 Q7L4E1-3;Q7L4E1 Q7L4E1-3 FAM73B Protein FAM73B 1 0 TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR;TLMLPLT(0.001)EGS(0.999)LR ;;;; 223.36 4.43E-23 723172000 605866 711400 593874 625383 718713 697453 885570 1005660 575154 1088520 TRUE FALSE FALSE 740638.8015 794592.0416 813572.7058 659546.0897 647155.4102 733970.5606 696360.7351 759020.3082 690582.1322 817171.9967 0.906343835 0.972368173 0.99559543 0.807108041 0.791945163 0.898183692 0.852159322 0.928837884 0.845087858 1 19.64028024 -5.251543883 24.91987212 0.86837883 0.95952905 0.28107597 0.060468021 787.486303 1983126.092 0.016210729 0.027652649 5.60E-06 5.251543883 0.09115022 TLMLPLTEGS(ph)LR ddPTM_HeLa_A486_30min_R1 5 TLMLPLTEGSLR 12 0 Q7L4E1-3;Q7L4E1 Q7L4E1-3 FAM73B Protein FAM73B 1 0 TLMLPLT(0.009)EGS(0.991)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR ;;;; 147.73 1.62E-07 524647000 474911 494336 478319 190510 651616 501577 592447 563330 622818 614012 TRUE FALSE FALSE 441622.1913 455163.015 663536.9266 443516.9078 569884.2452 439697.5294 444210.4943 435072.0564 676804.3657 460259.3987 0.959507166 0.988927149 1.441658614 0.963623794 1.238180571 0.955325477 0.965130741 0.945275768 1.470484617 1 18.81208766 -6.270189752 24.91203994 1.057441032 1.120550082 0.015223979 0.197551818 3334.860422 9494223.678 0.068686328 0.061611154 5.37E-07 6.270189752 0.063109049 TLMNLGGLAVAR ddPTM_HeLa_A485_30min_R1 2 TLMNLGGLAVAR 12 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 0 ; ; 143.28 0.00054597 53738000 47767 54854 53296 49618 69656 54906 70324 73719 48532 74005 FALSE FALSE TRUE 58392.60436 61268.69813 73012.40823 52328.5057 62720.80406 57780.79326 55298.70291 55639.29966 58271.92724 55556.91546 1.051041151 1.102809572 1.314191179 0.941890047 1.128946838 1.040028821 0.995352288 1.001482879 1.048869016 1 15.76167888 -5.287513027 24.99007922 1.026480028 1.150693616 0.385010243 0.077194374 800.032781 766783.1696 0.021723063 0.032232093 5.16E-06 5.287513027 0.124213589 TLNAET(ph)PKS(ph)SPLPAK ddPTM_HeLa_A485_30min_R1 2 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 0 T(0.063)LNAET(0.937)PKS(0.544)S(0.456)PLPAK;T(0.007)LNAET(0.993)PKS(0.567)S(0.433)PLPAK ; 126.4 2.19E-05 2075000000 1662290 1187770 883160 3888610 2402070 1930580 4059190 3607990 1487160 5263000 TRUE FALSE FALSE 2032060.676 1326669.369 1209877.635 4101034.918 2162911.477 2031662.184 3191910.896 2723124.795 1785619.371 3951030.958 0.514311504 0.335778024 0.306218212 1.037965777 0.547429645 0.514210647 0.807867853 0.689218795 0.45193758 1 21.91379772 -14 0.061461677 2.39250503 1.10E-11 0.293926279 0.204844904 524.3600071 2.344535183 110.852156 17.6701589 1.00E-14 14 -2.39250503 TLNAET(ph)PKSS(ph)PLPAK ddPTM_HeLa_A485_30min_R1 1 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 0 TLNAET(1)PKS(0.041)S(0.959)PLPAK 139.44 2.96E-06 1296000000 1812700 1112200 883170 3864200 2492300 2071700 4051000 3664800 1655000 5657100 TRUE FALSE FALSE 2215928.861 1242262.115 1209891.335 4075291.461 2244157.861 2180171.009 3185470.756 2766002.054 1987143.319 4246889.081 0.521776957 0.292511081 0.284888847 0.959594513 0.52842394 0.513357181 0.750071569 0.651300752 0.467905632 1 22.017975 -13.9999998 0.066443026 2.438431775 2.66E-11 0.361583693 0.186430148 393.156398 1.886994982 89.98367098 12.40505623 1.00E-14 13.9999998 -2.438431775 TLNAET(ph)PKSS(ph)PLPAK ddPTM_HeLa_A486_30min_R1 2 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 0 T(0.008)LNAET(0.992)PKS(0.171)S(0.829)PLPAK;T(0.003)LNAET(0.997)PKS(0.411)S(0.589)PLPAK ; 146.78 6.33E-08 3050500000 3610800 3334300 1324430 3563100 3465000 4955300 7223600 6492800 2870400 8376800 TRUE FALSE FALSE 3357701.566 3070077.925 1837284.765 8295076.869 3030387.39 4343965.468 5416178.877 5014531.177 3119208.583 6279194.756 0.53473442 0.488928604 0.292598786 1.321041502 0.482607644 0.691802952 0.862559466 0.798594624 0.49675296 1 22.58214813 TLNAETPKSS(ph)PLPAK ddPTM_HeLa_A485_30min_R1 4 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 TLNAET(0.003)PKS(0.139)S(0.858)PLPAK;TLNAETPKS(0.049)S(0.951)PLPAK;TLNAETPKS(0.248)S(0.752)PLPAK;TLNAETPKS(0.185)S(0.814)PLPAK ;;; 166.47 2.41E-12 7405500000 2639600 2648360 1644330 3881920 3862270 3243220 5323240 5793820 1974130 4450150 TRUE FALSE FALSE 3226769.913 2958062.664 2252636.093 4093979.46 3477728.838 3413029.984 4185886.287 4372876.561 2370319.783 3340809.504 0.965864683 0.885432905 0.674278522 1.225445346 1.040983879 1.021617659 1.252955693 1.308927239 0.709504622 1 21.67176629 -5.267402352 24.99768324 1.09594949 0.846216122 0.281326389 0.172999521 580.8190266 2434882.045 0.047920589 0.073208534 5.40E-06 5.267402352 -0.249733367 TLNAETPKSS(ph)PLPAK ddPTM_HeLa_A486_30min_R1 4 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 TLNAET(0.001)PKS(0.227)S(0.773)PLPAK;TLNAET(0.001)PKS(0.168)S(0.831)PLPAK;TLNAETPKS(0.008)S(0.992)PLPAK;TLNAETPKS(0.254)S(0.746)PLPAK ;;; 235.24 2.44E-41 6371480000 2243480 1720280 842449 1160941 1967940 2131200 3000020 2953120 1220933 3068750 TRUE FALSE FALSE 2086223.637 1583958.748 1168667.814 2702729.319 1721102.615 1868274.212 2249383.265 2280759.042 1326764.455 2300315.026 0.906929535 0.688583403 0.508046855 1.174938775 0.748203005 0.812181893 0.977858789 0.991498563 0.576775112 1 21.13340002 -5.24304181 24.99861021 0.890587973 0.69992632 0.203341928 0.177573031 1379.607848 1874608.007 0.047132611 0.081439348 5.71E-06 5.24304181 -0.190661653 TLNDELEIIEGMKFDR ddPTM_HeLa_A485_30min_R1 2 TLNDELEIIEGMKFDR 16 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 147.92 8.16E-08 78963000 73246 92081 56105 65820 94662 114829 136811 186798 63739 121672 FALSE FALSE TRUE 89539.32 102849.072 76860.57422 69415.57993 85237.1189 120841.2689 107580.2122 140985.4976 76530.83265 91341.40961 0.980270837 1.125985163 0.841464726 0.759957398 0.93317061 1.322962602 1.177781388 1.543500349 0.837854736 1 16.47898143 -6.244280821 22.82583125 1.210473663 0.924997323 0.277709496 0.196343401 309.4917157 411712.3135 0.063610965 0.063400377 5.70E-07 6.244280821 -0.285476339 TLNMT(ph)TSPEEK ddPTM_HeLa_A486_30min_R1 3 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 TLNMT(0.73)T(0.178)S(0.092)PEEK;TLNMT(0.496)T(0.252)S(0.252)PEEK;TLNMT(0.333)T(0.333)S(0.333)PEEK ;; 126.1 0.00046436 269930000 1439150 1273780 694800 741340 1232730 1483680 1905930 1822160 1081170 2384360 TRUE FALSE FALSE 1338273.017 1172841.034 963845.1674 1725876.985 1078109.509 1300638.647 1429046.155 1407293.945 1174886.686 1787300.736 0.748767675 0.656207996 0.539274196 0.965633231 0.60320543 0.727711134 0.799555512 0.787385087 0.657352544 1 20.76935098 -14 0.227898925 2.466306621 0.689978134 0.35309168 0.112792763 177.1302992 1.773704232 119.7660914 0.195998587 1.00E-14 14 -1.776328487 TLNMTT(ph)SPEEK ddPTM_HeLa_A485_30min_R1 4 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 TLNMT(0.122)T(0.609)S(0.269)PEEK;TLNMT(0.125)T(0.624)S(0.251)PEEK;TLNMT(0.283)T(0.525)S(0.192)PEEK;TLNMT(0.131)T(0.609)S(0.26)PEEK ;;; 215.87 4.85E-17 4574700000 3684670 3362450 2426630 5756630 4617940 3806060 6243050 6219360 2991030 7364830 TRUE FALSE FALSE 4504312.13 3755659.278 3324341.417 6071100.12 4158161.679 4005339.416 4909171.366 4694052.208 3591302.286 5528913.421 0.814683065 0.679276196 0.601264872 1.09806388 0.752075745 0.724435185 0.887908888 0.849000853 0.64954938 1 22.39856455 -11.49453976 2.283226761 3.867259453 0.787082352 0.187382098 0.134791307 7543109.361 635477.8065 114406848.5 0.034143073 3.20E-12 11.49453976 -3.080177101 TLNMTT(ph)SPEEK ddPTM_HeLa_A486_30min_R1 2 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 TLNMT(0.111)T(0.444)S(0.444)PEEK;TLNMT(0.296)T(0.484)S(0.22)PEEK ; 225.36 2.31E-17 815470000 1493170 1330860 680990 801780 1294170 1638180 2084910 1989830 1082560 2446410 TRUE FALSE FALSE 1388506.494 1225397.807 944687.5655 1866584.36 1131843.131 1436078.007 1563243.466 1536789.147 1176397.172 1833813.013 0.75716907 0.668223967 0.515149341 1.017870605 0.617207492 0.783110381 0.852455215 0.838029361 0.64150334 1 20.80641511 -14 0.130923021 1.812309523 0.645760735 0.242217612 0.135211551 207.9832393 1.710940812 44.74387486 0.99371172 1.00E-14 14 -1.166548788 TLNMTTS(ph)PEEK ddPTM_HeLa_A485_30min_R1 1 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 TLNMT(0.002)T(0.154)S(0.844)PEEK 267.01 7.68E-28 1801000000 1177000 1065300 784820 1804600 1416800 1166000 2022800 1984400 927440 2393700 TRUE FALSE FALSE 1438819.589 1189877.568 1075157.577 1903180.729 1275738.417 1227049.957 1590612.255 1497722.789 1113568.701 1796994.643 0.800681068 0.662148645 0.598308727 1.059090931 0.709928893 0.68283451 0.885151362 0.833459796 0.619683929 1 20.77715468 -10.95170932 2.686510278 1.174850775 0.764258425 0.225309831 0.132704859 20928217.99 11365714.67 22845141.29 0.032829891 1.12E-11 10.95170932 -0.41059235 TLNMTTS(ph)PEEK ddPTM_HeLa_A486_30min_R1 1 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 TLNMT(0.011)T(0.277)S(0.712)PEEK 180.61 2.00E-10 891170000 1052100 859000 490060 508030 887470 1128700 1436400 1369200 763960 1677100 TRUE FALSE FALSE 978353.223 790929.7116 679824.3563 1182719.514 776155.2373 989452.4698 1076997.527 1057463.049 830180.6679 1257143.244 0.778235279 0.629148441 0.540769208 0.940799324 0.617396022 0.787064222 0.856702315 0.841163531 0.660370783 1 20.26171761 -14 0.104921067 1.821221757 0.579268699 0.318957884 0.117427301 207.1995397 1.460285848 36.96267448 1.695208664 1.00E-14 14 -1.241953058 TLNPS(ph)PAGWFVQQHPELELMSSFR ddPTM_HeLa_A485_30min_R1 3 TLNPSPAGWFVQQHPELELMSSFR 24 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 T(0.003)LNPS(0.997)PAGWFVQQHPELELMSSFR;TLNPS(1)PAGWFVQQHPELELMSSFR;T(0.01)LNPS(0.99)PAGWFVQQHPELELMSSFR ;; 200.57 1.24E-28 1156989000 109524 154927 142493 104005 181185 129486 148615 159370 101881 115908 TRUE FALSE FALSE 133887.2359 173044.365 195207.0903 109686.5298 163145.5852 136265.6867 116862.1912 120284.2576 122327.5822 87014.26873 1.53868139 1.988689528 2.243391724 1.260557968 1.874929108 1.566015422 1.34302331 1.382350957 1.405833595 1 16.40896438 -7.02840085 0.379904511 1.00871909 1.935493186 0.493573319 0.252218681 1.032262093 0.395630945 0.308160018 0.321440355 9.37E-08 7.02840085 0.926774096 TLNPS(ph)PAGWFVQQHPELELMSSFR ddPTM_HeLa_A486_30min_R1 2 TLNPSPAGWFVQQHPELELMSSFR 24 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 TLNPS(1)PAGWFVQQHPELELMSSFR;T(0.005)LNPS(0.995)PAGWFVQQHPELELMSSFR ; 175.95 7.11E-15 724800000 157486 144760 146783 37217 175755 124241 145597 132824 107607 124084 TRUE FALSE FALSE 146447.0447 133288.6904 203621.3086 86643.05684 153710.169 108913.4086 109167.0906 102582.8747 116934.4614 93012.55875 1.574486786 1.433018209 2.189180809 0.93151998 1.652574353 1.170953795 1.17368119 1.102892729 1.257190029 1 16.5051379 -5.888345616 0.90545158 1.12555876 1.661142073 0.345040395 0.289936689 0.678523301 1.215160007 0.146844399 0.203997092 1.29E-06 5.888345616 0.535583313 TLNPSPAGWFVQQHPELELMS(ph)SFR ddPTM_HeLa_A485_30min_R1 1 TLNPSPAGWFVQQHPELELMSSFR 24 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 TLNPSPAGWFVQQHPELELMS(0.5)S(0.5)FR 92.822 0.0016854 32265000 10525 11250 13570 13058 11409 12854 17120 16289 10755 12234 TRUE FALSE FALSE 12866.24994 12565.58964 18590.10769 13771.32548 10273.0799 13527.01556 13462.17214 12294.09721 12913.42985 9184.28895 1.400897773 1.368161401 2.024120517 1.499443838 1.118549292 1.472842986 1.465782731 1.338600873 1.406034797 1 13.16495232 -12.37478288 0.157847597 1.11E-07 1.61376207 0.324142154 0.209949849 93.48357109 1.373846651 31.55601498 1.070162283 4.22E-13 12.37478288 1.613761959 TLNPSPAGWFVQQHPELELMS(ph)SFR ddPTM_HeLa_A486_30min_R1 2 TLNPSPAGWFVQQHPELELMSSFR 24 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 TLNPSPAGWFVQQHPELELMS(0.5)S(0.5)FR;TLNPSPAGWFVQQHPELELMS(0.5)S(0.5)FR ; 121.26 3.03E-05 56045000 18832.2 19192.8 17238.7 12884.2 26365 20320.7 28867 25797 21976 34225 TRUE FALSE FALSE 17512.16003 17671.89263 23913.98631 29995.06873 23058.05586 17813.73864 21644.17128 19923.58624 23880.89737 25654.83723 0.682606554 0.688832771 0.932143365 1.1691779 0.898780049 0.694361788 0.843668236 0.776601546 0.930853591 1 14.64694325 -4.755030782 24.71857981 0.897119609 0.685719521 0.345617885 0.120614788 164.5085838 634505.5772 0.034103336 0.085680499 1.76E-05 4.755030782 -0.211400088 TLNPSPAGWFVQQHPELELMSS(ph)FR ddPTM_HeLa_A485_30min_R1 1 TLNPSPAGWFVQQHPELELMSSFR 24 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 TLNPSPAGWFVQQHPELELMS(0.178)S(0.822)FR 180.6 1.63E-20 30116000 10840 15019 10848 13488 14891 12130 17057 18826 14156 13187 TRUE FALSE FALSE 13251.3206 16775.3414 14861.12662 14224.81529 13408.39975 12765.10804 13412.63261 14208.89398 16996.97935 9899.723589 1.338554605 1.694526241 1.501165814 1.436890147 1.354421629 1.289440854 1.354849202 1.43528189 1.716914538 1 13.27317253 -5.385043273 2.90583408 1.377647193 1.531156012 0.116431035 0.182909797 0.597848147 9.679464382 0.053149925 0.084939986 4.12E-06 5.385043273 0.153508819 TLPANRSS(ph)PSGAS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 TLPANRSSPSGASSPR 16 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 2 0 T(0.012)LPANRS(0.107)S(0.881)PS(0.135)GAS(0.56)S(0.306)PR 66.874 0.012479 328210000 217200 193700 213380 91248 332020 162520 271490 297450 158250 240680 TRUE FALSE FALSE 201975.4016 178350.5066 296006.4505 212429.9554 290374.9556 142469.9348 203560.3305 229727.1283 171967.2374 180412.1614 1.119522099 0.988572528 1.640723376 1.177470264 1.609508768 0.789691414 1.128307143 1.273346134 0.953190938 1 17.46093707 -6.26797412 24.9991075 1.05220378 1.300786515 0.279050154 0.221933555 826.228627 3160784.2 0.077868859 0.070297867 5.40E-07 6.26797412 0.248582735 TLPANRSS(ph)PSGASS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TLPANRSSPSGASSPR 16 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 2 0 T(0.006)LPANRS(0.172)S(0.821)PS(0.033)GAS(0.167)S(0.8)PR 60.032 0.029893 345740000 133810 284930 252080 117070 333640 298130 328930 534420 195290 201310 TRUE FALSE FALSE 163575.5729 318250.0849 345334.8819 123465.2377 300421.6301 313739.6258 258651.4184 403352.6571 234482.9117 151127.1218 1.082370728 2.105843617 2.285062256 0.816962807 1.987873695 2.075998153 1.711482461 2.668962739 1.551560758 1 17.20540307 TLPIRS(ph)PK ddPTM_HeLa_A485_30min_R1 4 TLPIRSPK 8 1 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 TLPIRS(1)PK;T(0.008)LPIRS(0.992)PK;T(0.001)LPIRS(0.999)PK;TLPIRS(1)PK ;;; 85.958 0.0022585 1064380000 855870 744840 558232 1276110 1096040 838620 1278460 1419740 693420 1604140 TRUE FALSE FALSE 1046255.329 831942.5588 764745.2468 1345820.658 986914.4092 882528.8464 1005306.577 1071546.539 832583.0336 1204257.42 0.868797079 0.690834488 0.635034698 1.117552307 0.819521136 0.732840697 0.834793758 0.889798577 0.691366331 1 20.19971238 -11.44614888 2.187661307 2.79222795 0.810646854 0.161856681 0.130374658 14979492.72 974630.3047 133537719.7 0.034651711 3.58E-12 11.44614888 -1.981581096 TLPIRS(ph)PK ddPTM_HeLa_A486_30min_R1 4 TLPIRSPK 8 1 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 TLPIRS(1)PK;TLPIRS(1)PK;TLPIRS(1)PK;TLPIRS(1)PK ;;; 86.344 0.0022262 760635000 664980 611450 300036 363540 587360 660890 830510 788440 422976 1032420 TRUE FALSE FALSE 618368.336 562996.4751 416217.9744 846339.4923 513687.8319 579356.1112 622707.6138 608929.4235 459639.9002 773895.3121 0.799033573 0.727484023 0.537822064 1.093609793 0.663769148 0.748623363 0.804640633 0.786836946 0.593930333 1 19.56177889 -10.97967157 2.90849664 1.214811605 0.753824576 0.216476137 0.142205502 100668035.2 48890739.43 144418481.6 0.03415564 1.05E-11 10.97967157 -0.460987029 TLPMS(ph)PPSER ddPTM_HeLa_A485_30min_R1 1 TLPMSPPSER 10 0 O15062 O15062 ZBTB5 Zinc finger and BTB domain-containing protein 5 1 0 T(0.003)LPMS(0.988)PPS(0.009)ER 64.224 0.021826 62967000 103170 138850 133960 99860 169330 117340 128670 140180 127790 125860 TRUE FALSE FALSE 126119.8106 155087.2997 183517.3785 105315.0989 152470.9106 123483.741 101178.6034 105800.6352 153436.2808 94485.41828 1.334807136 1.641388719 1.942282543 1.114617481 1.61369779 1.306907915 1.070838286 1.119756224 1.623914924 1 16.52780408 -5.992461235 1.151403661 1.215695278 1.592492467 0.253342159 0.256915596 0.669534483 1.873770554 0.11871706 0.138086535 1.02E-06 5.992461235 0.376797189 TLPS(ph)GSPRPGQLERPTSLALDSR ddPTM_HeLa_A485_30min_R1 1 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 T(0.013)LPS(0.493)GS(0.493)PRPGQLERPTSLALDSR 98.967 0.00043847 620140000 212990 277750 274980 237460 328780 268590 330680 352670 273190 365750 TRUE FALSE FALSE 260368.8907 310230.4464 376706.5449 250431.8385 296045.5088 282652.9571 260027.5166 266177.1295 328016.7272 274575.2561 0.948260577 1.129855803 1.371961007 0.912069944 1.078194419 1.029418896 0.947017296 0.969414117 1.194633237 1 18.06684209 -5.314111831 24.99999706 1.017345395 1.14801142 0.200586103 0.120120854 521.3269575 247436.9485 0.033911641 0.050299121 4.85E-06 5.314111831 0.130666024 TLPS(ph)GSPRPGQLERPTSLALDSR ddPTM_HeLa_A486_30min_R1 2 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 T(0.012)LPS(0.533)GS(0.455)PRPGQLERPTSLALDSR;T(0.072)LPS(0.489)GS(0.439)PRPGQLERPTSLALDSR ; 112.8 7.07E-05 1440990000 995570 1075920 959120 399200 1310620 995290 1116930 1100510 1022970 1168080 TRUE FALSE FALSE 925785.6841 990660.1808 1330516.95 929357.7745 1146229.819 872501.2392 837462.3003 849947.897 1111641.863 875585.1651 1.057333679 1.131426411 1.519574569 1.06141334 1.309101461 0.996477869 0.956460129 0.970719846 1.269598787 1 19.73988799 -6.271890961 24.84855467 1.031684359 1.219386818 0.257431645 0.150112397 926.0688155 2201715.823 0.052592237 0.046874937 5.35E-07 6.271890961 0.187702459 TLPSGS(ph)PRPGQLERPTSLALDSR ddPTM_HeLa_A485_30min_R1 4 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 T(0.004)LPS(0.136)GS(0.86)PRPGQLERPTSLALDSR;T(0.021)LPS(0.202)GS(0.778)PRPGQLERPTSLALDSR;TLPS(0.028)GS(0.972)PRPGQLERPTSLALDSR;T(0.001)LPS(0.182)GS(0.817)PRPGQLERPTSLALDSR ;;; 149.66 9.98E-10 3949910000 1278140 1729370 1632970 1293000 1935160 1628490 1881070 2014280 1421900 1917110 TRUE FALSE FALSE 1562457.833 1931604.778 2237073.557 1363633.316 1742488.676 1713755.218 1479164.028 1520274.672 1707262.288 1439209.759 1.085635936 1.342128738 1.554376312 0.947487541 1.210726001 1.190761255 1.027761255 1.056325989 1.186249799 1 20.45684544 -5.273193587 24.99800395 1.097646257 1.328855184 0.400974587 0.133481591 750.0307712 1595110.31 0.037745291 0.056493978 5.33E-06 5.273193587 0.231208927 TLPSGS(ph)PRPGQLERPTSLALDSR ddPTM_HeLa_A486_30min_R1 4 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 T(0.007)LPS(0.175)GS(0.819)PRPGQLERPTSLALDSR;T(0.004)LPS(0.199)GS(0.797)PRPGQLERPTSLALDSR;T(0.001)LPS(0.214)GS(0.77)PRPGQLERPT(0.012)S(0.003)LALDSR;TLPS(0.108)GS(0.771)PRPGQLERPT(0.027)S(0.029)LALDS(0.065)R ;;; 112.8 0.00011214 3828720000 964940 1031340 895470 355953 1187690 903440 1081520 1040610 900570 1121050 TRUE FALSE FALSE 897302.689 949612.8623 1242219.966 828676.5729 1038718.845 791982.7583 810912.2568 803685.8194 978632.1327 840331.7832 1.067795729 1.130045158 1.478249413 0.986130228 1.236081826 0.942464362 0.964990582 0.956391077 1.164578268 1 19.68059953 -6.260559419 24.96379468 1.000415906 1.182740661 0.297410614 0.133535203 100.062093 2838709.515 0.045222249 0.042690708 5.49E-07 6.260559419 0.182324754 TLPSGSPRPGQLERPTS(ph)LALDSR ddPTM_HeLa_A485_30min_R1 1 TLPSGSPRPGQLERPTSLALDSR 23 2 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 TLPS(0.041)GS(0.185)PRPGQLERPT(0.292)S(0.37)LALDS(0.112)R 67.31 0.006485 349430000 65955 102970 94397 78372 115670 84224 118950 109500 96975 115410 TRUE FALSE FALSE 80626.46221 115011.4458 129318.3785 82653.26391 104153.4887 88633.8384 93535.36077 82644.95331 116436.993 86640.41096 0.930587255 1.327457297 1.492587316 0.953980515 1.20213521 1.023008056 1.079581222 0.953884595 1.343910904 1 16.40275247 -5.286057531 24.99928728 1.080337952 1.257935399 0.172323244 0.171188518 1253.729915 1273137.182 0.047218952 0.070067599 5.18E-06 5.286057531 0.177597447 TLPSTSSS(ph)GSKR ddPTM_HeLa_A485_30min_R1 4 TLPSTSSSGSKR 12 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TLPSTSS(0.009)S(0.918)GS(0.073)KR;TLPSTSS(0.004)S(0.874)GS(0.122)KR;TLPSTS(0.004)S(0.112)S(0.882)GS(0.001)KR;TLPSTS(0.002)S(0.029)S(0.965)GS(0.004)KR ;;; 136.33 7.95E-06 1477320000 1373120 1431430 960950 1987920 1914900 1563140 2415760 2430120 1276930 2789960 TRUE FALSE FALSE 1678565.807 1598823.287 1316445.393 2096515.036 1724245.832 1644983.593 1899613.141 1834129.26 1533198.138 2094474.317 0.801425825 0.763353016 0.628532602 1.000974334 0.823235605 0.785392105 0.906964161 0.875699093 0.732020501 1 20.99815676 -14 0.0971769 1.529149223 0.694804516 0.248063662 0.096403552 287.3276239 1.908044444 31.78611477 1.81411972 1.00E-14 14 -0.834344707 TLPSTSSS(ph)GSKR ddPTM_HeLa_A486_30min_R1 3 TLPSTSSSGSKR 12 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TLPS(0.049)T(0.051)S(0.043)S(0.125)S(0.722)GS(0.01)KR;TLPSTS(0.001)S(0.031)S(0.769)GS(0.199)KR;TLPSTSS(0.022)S(0.977)GS(0.001)KR ;; 171.26 7.54E-11 1480170000 1529050 1328510 744460 752770 1348990 1463130 1872870 1799480 1113490 2168260 TRUE FALSE FALSE 1421871.491 1223234.029 1032734.849 1752486.603 1179787.095 1282623.897 1404258.117 1389777.686 1210008.21 1625313.583 0.874829021 0.752614168 0.635406521 1.078245221 0.725882751 0.789154727 0.863992113 0.855082798 0.744476772 1 20.63228666 -10.69842172 2.548483725 1.031740486 0.813512663 0.198604119 0.112511318 27263404.01 21604067.09 5559115.855 0.027793889 2.00E-11 10.69842172 -0.218227823 TLPSTSSSGS(ph)KR ddPTM_HeLa_A486_30min_R1 1 TLPSTSSSGSKR 12 1 P08651-5;P08651-6;P08651;A0A286YEX4;P08651-3;P08651-2;P08651-4 P08651-5 NFIC Nuclear factor 1 C-type 1 0 TLPSTS(0.001)S(0.399)S(0.192)GS(0.408)KR 138.31 4.92E-06 637330000 646720 592540 296160 346750 599520 667570 875900 821450 471400 991670 TRUE FALSE FALSE 601388.2677 545584.9724 410841.0834 807251.5238 524322.6113 585212.0008 656740.5557 634423.7671 512261.3316 743349.3773 0.809025051 0.733954973 0.55268908 1.085965158 0.705351517 0.787263726 0.883488405 0.853466467 0.689125931 1 19.50368092 -14 0.192386341 1.870327638 0.756089463 0.172907363 0.134160482 249.3002152 2.445621418 83.7957583 0.350891466 1.00E-14 14 -1.114238175 TLQPPES(ph)PR ddPTM_HeLa_A485_30min_R1 4 TLQPPESPR 9 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 TLQPPES(1)PR;TLQPPES(1)PR;TLQPPES(1)PR;TLQPPES(1)PR ;;; 150.33 7.05E-05 3614610000 1312790 1716080 1594900 1390700 1969690 1648930 1971590 2172060 1513720 1815590 TRUE FALSE FALSE 1604815.606 1916760.628 2184919.879 1466670.42 1773580.748 1735265.425 1550343.69 1639358.879 1817509.719 1362996.826 1.177416979 1.406283999 1.603026388 1.076062975 1.301236153 1.273125066 1.137452164 1.202760599 1.333465848 1 20.37835077 -14 0.098623844 0.097006108 1.47761715 0.276134261 0.140340724 248.7295962 1.671109281 46.22705766 2.532420969 1.00E-14 14 1.380611042 TLQPPES(ph)PR ddPTM_HeLa_A486_30min_R1 4 TLQPPESPR 9 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 TLQPPES(1)PR;TLQPPES(1)PR;TLQPPES(1)PR;TLQPPES(1)PR ;;; 105.25 0.0011691 2975200000 1289190 1468760 1333000 485149 1806880 1337270 1596610 1563040 1220070 1336700 TRUE FALSE FALSE 1198824.438 1352370.108 1849173.299 1129451.39 1580244.262 1172291.224 1197121.291 1207169.913 1325826.65 1001981.62 1.196453523 1.349695525 1.845516188 1.127217674 1.577119012 1.169972783 1.194753743 1.204782492 1.323204562 1 19.93442461 -6.284635971 24.38606275 1.192354776 1.422801959 0.263799025 0.200307892 864.2910441 908606.3994 0.069118508 0.061001269 5.19E-07 6.284635971 0.230447183 TLQRLS(ph)SGFDDIDLPSAVK ddPTM_HeLa_A485_30min_R1 2 TLQRLSSGFDDIDLPSAVK 19 1 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 T(0.009)LQRLS(0.67)S(0.32)GFDDIDLPSAVK;T(0.002)LQRLS(0.673)S(0.325)GFDDIDLPSAVK ; 187.16 1.43E-18 971270000 657690 742810 607050 728290 1086670 1005030 1309430 1692760 710830 1083480 TRUE FALSE FALSE 803990.8715 829675.1679 831623.0565 768074.6386 978477.3193 1057651.817 1029659.583 1277607.956 853487.0609 813388.376 0.988446473 1.020023389 1.022418172 0.944290159 1.202964473 1.300303579 1.265889228 1.570723155 1.049298325 1 19.63358485 -5.88532151 4.462221393 1.272618245 0.998415364 0.371865849 0.147895433 0.201903876 6.94567471 0.04490666 0.051524056 1.30E-06 5.88532151 -0.274202881 TLQRLS(ph)SGFDDIDLPSAVK ddPTM_HeLa_A486_30min_R1 2 TLQRLSSGFDDIDLPSAVK 19 1 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 T(0.03)LQRLS(0.655)S(0.315)GFDDIDLPSAVK;T(0.003)LQRLS(0.571)S(0.427)GFDDIDLPSAVK ; 184.53 1.81E-18 1154730000 900350 1000350 690260 462860 1254360 921690 1350210 1291460 800670 1075570 TRUE FALSE FALSE 837240.1144 921078.6228 957547.1578 1077561.472 1097026.472 807981.2589 1012373.177 997422.7504 870072.7203 806240.2712 1.038449882 1.142436883 1.187669721 1.33652648 1.360669408 1.002159391 1.255671805 1.237128417 1.079172985 1 19.62085032 -7.948760965 4.205184067 1.001076196 1.198449857 0.260350556 0.108536782 0.255689573 9.353064292 0.108470465 0.028488305 1.13E-08 7.948760965 0.19737366 TLQRLSS(ph)GFDDIDLPSAVK ddPTM_HeLa_A485_30min_R1 1 TLQRLSSGFDDIDLPSAVK 19 1 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 TLQRLS(0.356)S(0.644)GFDDIDLPSAVK 205.02 5.77E-26 653680000 418440 550410 452640 505490 710040 703080 940870 1117700 485760 773540 TRUE FALSE FALSE 511520.5344 614775.6616 620090.3719 533103.6387 639345.9245 739892.1816 739845.4383 843582.3225 583247.5763 580710.7139 0.880852587 1.058660787 1.067812866 0.918019292 1.100971463 1.274114914 1.274034421 1.452672221 1.004368548 1 19.14746013 -6.034688681 4.195334052 1.232171078 0.993321918 0.351990439 0.136591535 0.217172453 8.521382945 0.044042794 0.046194435 9.23E-07 6.034688681 -0.23884916 TLQRLSS(ph)GFDDIDLPSAVK ddPTM_HeLa_A486_30min_R1 1 TLQRLSSGFDDIDLPSAVK 19 1 E9PKC4;Q9Y446;Q9Y446-2 E9PKC4 PKP3 Plakophilin-3 1 0 T(0.001)LQRLS(0.068)S(0.932)GFDDIDLPSAVK 192.75 6.13E-19 559090000 833280 918570 607230 465510 1240200 928820 1314000 1285200 757790 1095700 TRUE FALSE FALSE 774871.3751 845779.1678 842365.7182 1083730.806 1084642.552 814231.6319 985223.3019 992588.0157 823475.8473 821329.5882 0.943435359 1.029768293 1.025612288 1.319483458 1.320593544 0.991357968 1.199546828 1.208513647 1.002613152 1 19.64760175 -5.028723957 23.45566188 1.161209018 0.996873838 0.252022388 0.11751163 409.4491394 334352.2543 0.032142435 0.055855949 9.36E-06 5.028723957 -0.16433518 TLQTDSIDSFETQRT(ph)PR ddPTM_HeLa_A485_30min_R1 4 TLQTDSIDSFETQRTPR 17 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TLQTDSIDSFETQRT(1)PR;TLQTDSIDSFETQRT(1)PR;TLQTDSIDSFETQRT(1)PR;TLQTDSIDSFETQRT(1)PR ;;; 238.49 3.23E-42 2528450000 1776420 2407950 2353180 1910900 3141780 2148270 2771900 2870530 2167960 2521280 TRUE FALSE FALSE 2171578.5 2689538.806 3223719.206 2015287.628 2828973.352 2260750.095 2179660.921 2166528.017 2603049.686 1892771.297 1.147301052 1.42095287 1.703174183 1.064728545 1.494619744 1.194412711 1.151571204 1.144632751 1.375258432 1 20.85206867 -6.372355712 7.734410278 1.179256036 1.37090984 0.212487153 0.185618328 0.472099844 29.60690055 0.064530796 0.05681013 4.24E-07 6.372355712 0.191653804 TLQTDSIDSFETQRT(ph)PR ddPTM_HeLa_A486_30min_R1 5 TLQTDSIDSFETQRTPR 17 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TLQTDSIDSFET(0.205)QRT(0.795)PR;TLQTDSIDSFET(0.001)QRT(0.999)PR;TLQTDSIDSFETQRT(1)PR;TLQTDSIDSFETQRT(1)PR;TLQTDSIDS(0.01)FET(0.068)QRT(0.922)PR ;;;; 262.78 1.31E-51 2188120000 2369470 2492260 2215330 850612 3034640 2223800 2697250 2795910 2020430 2547850 TRUE FALSE FALSE 2203382.389 2294764.241 3073165.105 1980267.724 2654007.154 1949450.166 2022369.521 2159342.327 2195562.499 1909851.776 1.153692876 1.201540491 1.609111839 1.036869849 1.389640383 1.02073375 1.058914386 1.130633463 1.149598375 1 20.86502924 -6.270744307 24.97477555 1.079324232 1.278893807 0.325935318 0.148072958 841.8650629 2259590.764 0.050893015 0.045483462 5.36E-07 6.270744307 0.199569575 TLRDS(ph)PNVEAAHLAR ddPTM_HeLa_A485_30min_R1 1 TLRDSPNVEAAHLAR 15 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 T(0.035)LRDS(0.965)PNVEAAHLAR 208.87 7.17E-26 385470000 78210 75179 83728 88693 118730 77812 81406 67245 104640 118560 TRUE FALSE FALSE 95607.54468 83970.53008 114702.4714 93538.07401 106908.8243 81886.116 64012.94307 50753.05831 125640.2882 89005.17394 1.074179629 0.943434256 1.288716895 1.050928501 1.201152917 0.920015235 0.719204741 0.570225933 1.411606569 1 16.44160158 -6.379808158 5.963446835 0.880611248 1.108061538 0.139114897 0.221764077 0.401983918 18.1713841 0.07773821 0.06824265 4.17E-07 6.379808158 0.22745029 TLS(ph)DDLDEAAKEFQEK ddPTM_HeLa_A485_30min_R1 1 TLSDDLDEAAKEFQEK 16 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 1 0 T(0.121)LS(0.879)DDLDEAAKEFQEK 95.094 0.00037928 16509000 20799 11598 8137.6 38603 23063 21522 38220 37160 13111 60575 TRUE FALSE FALSE 25425.66579 12954.28521 11148.03687 40711.78414 20766.76674 22648.85864 30053.98477 28046.45174 15742.25744 45474.7673 0.559115908 0.284867543 0.24514775 0.895260967 0.456665707 0.498053316 0.660893646 0.616747559 0.346175657 1 15.47277864 -14 0.218646929 3.402642377 0.449402551 0.380088658 0.185373919 166.8240037 1.668982137 177.0676415 0.369551591 1.00E-14 14 -2.953239827 TLS(ph)DDLDEAAKEFQEK ddPTM_HeLa_A486_30min_R1 1 TLSDDLDEAAKEFQEK 16 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 1 0 T(0.029)LS(0.971)DDLDEAAKEFQEK 99.059 0.00027456 17552000 34824 30582 8716.2 29500 30119 40944 64350 57312 24161 72956 TRUE FALSE FALSE 32383.01743 28158.57094 12091.34607 68677.49085 26341.19417 35892.74557 48248.94938 44263.30871 26255.29493 54687.34274 0.592148307 0.514901064 0.221099535 1.255820587 0.481668936 0.656326378 0.88226904 0.809388544 0.480098202 1 15.73891934 -4.620779848 0.096834002 1.157209868 1.75E-22 0.146734802 0.263895184 111.5142973 1.976785307 6.047738747 20.15560244 2.39E-05 4.620779848 -1.157209868 TLS(ph)DESICSNR ddPTM_HeLa_A485_30min_R1 1 TLSDESICSNR 11 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 T(0.004)LS(0.994)DES(0.003)ICSNR 105.95 0.00071756 232260000 327730 370890 371680 362000 540280 435890 569910 608780 406920 582300 TRUE FALSE FALSE 400632.4078 414262.3592 509179.8989 381775.1434 486487.8262 458712.5264 448144.0728 459475.7505 488585.1115 437143.3264 0.91647838 0.947657974 1.164789368 0.873340894 1.112879453 1.049341254 1.025165079 1.05108719 1.11767716 1 18.73774685 -4.548069903 24.92014033 1.046903446 0.924273175 0.284875571 0.074926295 215.5310131 213211.6023 0.017885719 0.047324605 2.83E-05 4.548069903 -0.122630271 TLS(ph)DESICSNRR ddPTM_HeLa_A485_30min_R1 1 TLSDESICSNRR 12 1 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 T(0.366)LS(0.634)DESICSNRR 114.21 0.00017985 264810000 145180 172170 163080 148820 215530 170510 237570 268250 155610 243080 TRUE FALSE FALSE 177474.7901 192303.7838 223410.0783 156949.6598 194071.0764 179437.6399 186811.2287 202461.2669 186839.4997 182484.6296 0.972546513 1.053808117 1.224267923 0.860070572 1.063492728 0.98330276 1.02370939 1.109470246 1.023864312 1 17.47741543 -8.134237235 0.003968578 0.399662179 1.659791717 0.003113404 0.089891832 144197.0271 331.4976832 52966.80093 52281.49579 7.34E-09 8.134237235 1.260129538 TLS(ph)DESICSNRR ddPTM_HeLa_A486_30min_R1 1 TLSDESICSNRR 12 1 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 T(0.08)LS(0.92)DESICSNRR 122.63 3.35E-05 258830000 199860 181900 141290 77427 219770 197010 215410 217560 155280 250140 TRUE FALSE FALSE 185850.8461 167485.5815 196001.2719 180253.9689 192204.3973 172704.9093 161512.1396 168026.3373 168739.7954 187503.3159 0.991186984 0.893240638 1.045321631 0.9613375 1.025071991 0.92107656 0.861382845 0.896124618 0.899929661 1 17.51655658 -6.441203098 6.97904424 0.903695609 0.980164859 0.300475116 0.05043623 0.290926867 21.3267717 0.017212324 0.01509661 3.62E-07 6.441203098 0.07646925 TLS(ph)DESIYNSQR ddPTM_HeLa_A485_30min_R1 4 TLSDESIYNSQR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 TLS(1)DESIYNSQR;TLS(1)DESIYNSQR;TLS(1)DESIYNSQR;T(0.002)LS(0.998)DESIYNSQR ;;; 356.46 3.95E-87 5213840000 1355640 1484430 1315020 1782480 2063670 1599340 2141100 2127990 1351670 2386190 TRUE FALSE FALSE 1657197.441 1658021.176 1801500.621 1879852.369 1858203.769 1683078.969 1683636.494 1606097.116 1622937.771 1791356.748 0.925107432 0.925567271 1.005662676 1.04940145 1.03731642 0.939555436 0.939866666 0.896581386 0.905982448 1 20.77262125 -6.448520564 8.807346781 0.928765757 0.989464602 0.239079373 0.045959169 0.568281602 63.50014117 0.017881952 0.015735365 3.56E-07 6.448520564 0.060698845 TLS(ph)DESIYNSQR ddPTM_HeLa_A486_30min_R1 5 TLSDESIYNSQR 12 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 T(0.002)LS(0.998)DESIYNSQR;TLS(1)DESIYNSQR;TLS(1)DESIYNSQR;TLS(1)DESIYNSQR;T(0.003)LS(0.986)DES(0.011)IYNSQR ;;;; 361.23 1.26E-87 6690240000 2546150 2816270 1923500 1158420 2922100 2853350 3283300 3214120 1982950 3374810 TRUE FALSE FALSE 2367678.033 2593098.509 2668330.713 2696860.303 2555582.97 2501332.688 2461783.613 2482335.04 2154833.703 2529735.61 0.935938927 1.025047242 1.054786399 1.066064095 1.010217416 0.988772375 0.973138696 0.981262639 0.851801941 1 21.27055518 -6.885876116 1.35000866 0.935498707 1.022460077 0.306918859 0.048605407 0.515949688 1.853885045 0.032797066 0.01703247 1.30E-07 6.885876116 0.086961371 TLS(ph)DESLCSGR ddPTM_HeLa_A485_30min_R1 1 TLSDESLCSGR 11 0 O60292;M0R2Q7 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 T(0.008)LS(0.983)DES(0.01)LCSGR 61.532 0.026923 225040000 182920 195490 165810 206140 390740 223310 284490 456860 228680 286120 TRUE FALSE FALSE 223609.9229 218350.855 227150.0189 217400.9062 351836.5536 235002.1663 223706.3874 344814.3687 274573.9784 214795.5496 1.041036108 1.016552044 1.057517343 1.012129472 1.638006719 1.094073721 1.041485207 1.605314306 1.278303852 1 17.71260458 TLS(ph)DESLCSGR ddPTM_HeLa_A486_30min_R1 1 TLSDESLCSGR 11 0 O60292;M0R2Q7 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 T(0.005)LS(0.995)DESLCSGR 128.36 5.04E-05 298200000 215330 259910 170590 69728 369360 219430 261370 269770 234950 266240 TRUE FALSE FALSE 200236.479 239313.785 236647.0166 162330.3079 323031.4247 192358.9576 195972.4615 208349.26 255315.6552 199571.7711 1.003330671 1.19913645 1.185773996 0.813393132 1.618622829 0.963858549 0.981964836 1.043981616 1.27931748 1 17.60654814 TLS(ph)DPPS(ph)PLPHGPPNK ddPTM_HeLa_A485_30min_R1 2 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 2 0 T(0.465)LS(0.535)DPPS(1)PLPHGPPNK;T(0.022)LS(0.978)DPPS(1)PLPHGPPNK ; 99.092 0.00053478 527370000 898890 838540 685930 1129800 1118960 877570 1259250 1154630 793950 1524710 TRUE FALSE FALSE 1098844.979 936599.9587 939684.0509 1191518.113 1007552.413 923518.2082 990200.9504 871455.1821 953288.4825 1144627.857 0.960001954 0.818257177 0.820951583 1.040965503 0.880244533 0.806828352 0.86508549 0.761343677 0.832837045 1 20.12644719 -6.008601297 24.98455471 0.839543646 0.905059203 0.08098109 0.08350272 926.6075953 2691562.836 0.026379533 0.028472452 9.80E-07 6.008601297 0.065515557 TLS(ph)DPPS(ph)PLPHGPPNK ddPTM_HeLa_A486_30min_R1 3 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 2 0 T(0.122)LS(0.878)DPPS(1)PLPHGPPNK;T(0.117)LS(0.883)DPPS(1)PLPHGPPNK;T(0.195)LS(0.805)DPPS(1)PLPHGPPNK ;; 78.674 0.0044886 557510000 1496420 1451610 850170 600930 1427230 1463540 1817960 1693150 1191560 1850100 TRUE FALSE FALSE 1391528.686 1336579.137 1179378.592 1398995.409 1248213.505 1282983.315 1363087.18 1307656.706 1294845.38 1386822.918 1.0033932 0.963770586 0.850417582 1.00877725 0.900052551 0.925124108 0.98288481 0.942915414 0.933677518 1 20.40335215 -6.746888365 24.99437357 0.960112395 0.939891994 0.049056773 0.047183531 940.4504418 1615416.371 0.017917598 0.01381366 1.79E-07 6.746888365 -0.020220401 TLS(ph)DPPSPLPHGPPNK ddPTM_HeLa_A485_30min_R1 2 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 T(0.057)LS(0.941)DPPS(0.002)PLPHGPPNK;T(0.015)LS(0.983)DPPS(0.002)PLPHGPPNK ; 178.51 1.03E-17 552520000 1778380 1911010 1636850 1536670 2888700 2012510 2909630 2739490 2139100 2865660 TRUE FALSE FALSE 2173974.496 2134485.996 2242388.93 1620614.391 2601090.885 2117881.912 2287963.781 2067625.782 2568397.749 2151303.701 1.010538166 0.992182552 1.042339549 0.753317345 1.209076563 0.984464402 1.063524309 0.961103624 1.193879669 1 21.03677977 -5.784143113 24.99996246 1.062261811 0.9592608 0.229663184 0.105862885 399.1896657 439561.0414 0.031660144 0.035923439 1.64E-06 5.784143113 -0.103001011 TLS(ph)DPPSPLPHGPPNK ddPTM_HeLa_A486_30min_R1 3 TLSDPPSPLPHGPPNK 16 0 H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBF7 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 T(0.03)LS(0.969)DPPSPLPHGPPNK;T(0.131)LS(0.868)DPPSPLPHGPPNK;T(0.003)LS(0.997)DPPSPLPHGPPNK ;; 192.16 2.67E-18 2282020000 2437400 2502100 1753330 184549 2731600 2320200 2888900 2661300 2267950 1702710 TRUE FALSE FALSE 2266550.847 2303824.484 2432266.332 429639.3986 2388977.257 2033957.314 2166066.664 2055380.086 2464537.732 1276340.333 1.775820122 1.805023647 1.905656562 0.33661821 1.871740001 1.593585395 1.697091761 1.610369924 1.930940885 1 20.28358164 TLS(ph)ESFSR ddPTM_HeLa_A485_30min_R1 3 TLSESFSR 8 0 O94921 O94921 CDK14 Cyclin-dependent kinase 14 1 0 TLS(0.997)ES(0.002)FSR;T(0.002)LS(0.973)ES(0.025)FSR;T(0.001)LS(0.999)ESFSR ;; 170.85 2.28E-05 650410000 729260 770160 725890 699520 856860 656380 846430 869090 529600 788330 TRUE FALSE FALSE 891481.3711 860223.5125 994426.9178 737733.0063 771548.0098 690747.0418 665583.3158 655944.3148 635885.8622 591813.8391 1.506354384 1.453537338 1.680303589 1.246562614 1.30370052 1.167169465 1.1246498 1.108362582 1.074469403 1 19.17478391 -5.841353082 0.914135264 1.072441616 1.549233499 0.830002566 0.085340806 0.229030062 0.416423419 0.042980316 0.062905663 1.44E-06 5.841353082 0.476791883 TLS(ph)ESFSR ddPTM_HeLa_A486_30min_R1 4 TLSESFSR 8 0 O94921 O94921 CDK14 Cyclin-dependent kinase 14 1 0 TLS(1)ESFSR;TLS(0.999)ES(0.001)FSR;TLS(0.999)ES(0.001)FSR;T(0.001)LS(0.999)ESFSR ;;; 232.63 1.10E-09 755320000 961230 1079860 762830 372356 1029620 923490 992210 1091180 789620 787820 TRUE FALSE FALSE 893852.7408 994287.9608 1058218.205 866863.5858 900475.4588 809559.1932 743948.5635 842742.1343 858064.8974 590544.7442 1.513607139 1.683679299 1.791935693 1.467905005 1.524821731 1.370868509 1.259766632 1.427058902 1.453005731 1 19.17168685 -5.962391182 1.243453791 1.314399513 1.656685472 0.542703811 0.139732715 0.367880773 1.191302454 0.060172787 0.071098928 1.09E-06 5.962391182 0.342285959 TLS(ph)FDTSK ddPTM_HeLa_A485_30min_R1 4 TLSFDTSK 8 0 Q7L804;Q7L804-2 Q7L804 RAB11FIP2 Rab11 family-interacting protein 2 1 0 TLS(1)FDTSK;T(0.001)LS(0.999)FDTSK;T(0.018)LS(0.982)FDTSK;T(0.001)LS(0.974)FDT(0.023)S(0.001)K ;;; 125.68 0.00060813 2050030000 2572780 2233400 1424420 3887990 3144600 2410130 4046860 4049010 2184560 5362730 TRUE FALSE FALSE 3145086.035 2494576.702 1951372.233 4100381.049 2831512.583 2536320.68 3182215.301 3055983.949 2622981.154 4025900.105 0.781213133 0.619632042 0.484704583 1.018500445 0.703324104 0.630000898 0.790435733 0.759080918 0.651526636 1 21.94087994 -10.81332765 2.536157833 1.095682424 0.715321593 0.290981586 0.133285476 27122463.19 17844615.74 15890755.03 0.033519932 1.54E-11 10.81332765 -0.380360832 TLS(ph)FDTSK ddPTM_HeLa_A486_30min_R1 2 TLSFDTSK 8 0 Q7L804;Q7L804-2 Q7L804 RAB11FIP2 Rab11 family-interacting protein 2 1 0 T(0.001)LS(0.999)FDTSK;T(0.004)LS(0.939)FDT(0.055)S(0.002)K ; 104.82 0.0014618 962010000 1284560 1366200 679000 697070 1226370 1668560 1951800 1950010 1100410 2148210 TRUE FALSE FALSE 1194518.977 1257937.336 941926.9843 1622814.188 1072547.239 1462710.032 1463438.996 1506035.291 1195794.425 1610284.233 0.741806293 0.781189625 0.584944549 1.007781207 0.666060821 0.908355184 0.908807877 0.935260534 0.742598356 1 20.61888393 -5.769111686 0.766931437 0.899013228 0.718081607 0.239667371 0.119752451 1.08501658 1.383190692 0.066419952 0.114423847 1.70E-06 5.769111686 -0.180931621 TLS(ph)GSPRPK ddPTM_HeLa_A485_30min_R1 1 TLSGSPRPK 9 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 T(0.016)LS(0.492)GS(0.492)PRPK 79.659 0.0018095 0 88081 86171 69061 114640 127640 98923 152480 153290 89581 173150 TRUE FALSE FALSE 107674.3146 96247.94886 94609.53777 120902.4929 114931.7134 104102.4553 119901.4024 115695.3872 107559.085 129986.8916 0.828347484 0.740443499 0.727839066 0.930112963 0.884179259 0.800868873 0.92241149 0.890054264 0.827461013 1 16.98800662 -1.012099088 0.041527877 1.362759142 1.70E-14 0.458303738 0.06023667 658.8877945 2.089804818 18.39127056 62.22938716 0.097252531 1.012099088 -1.362759142 TLS(ph)GSPRPK ddPTM_HeLa_A486_30min_R1 1 TLSGSPRPK 9 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 T(0.233)LS(0.665)GS(0.102)PRPK 48.741 0.026564 181240000 90651 96779 61658 51985 102010 104400 123860 129000 81021 124400 TRUE FALSE FALSE 84296.83302 89109.87958 85533.62886 121023.7072 89214.95459 91520.18946 92868.91794 99629.51605 88043.96551 93249.43029 0.903993008 0.955607764 0.917256316 1.297849293 0.956734581 0.981455749 0.995919414 1.068419568 0.94417698 1 16.50880729 TLS(ph)KEEETKK ddPTM_HeLa_A486_30min_R1 1 TLSKEEETKK 10 2 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 0 T(0.028)LS(0.972)KEEETKK 81.632 0.0046772 334490000 350830 387430 296640 207080 451710 350850 444620 448330 374730 695810 TRUE FALSE FALSE 326238.6287 356728.6358 411506.9523 482092.7052 395052.3198 307565.6942 333371.3733 346255.046 407211.8981 521574.647 0.625487896 0.683945506 0.788970389 0.924302414 0.757422398 0.589686818 0.639163301 0.663864795 0.780735606 1 18.99251422 -8.09022215 5.68727479 0.999991006 0.713697149 0.476285362 0.091669351 0.811274535 50.00052479 0.099996011 0.025978021 8.12E-09 8.09022215 -0.286293856 TLS(ph)KLNLCVDKTEK ddPTM_HeLa_A485_30min_R1 1 TLSKLNLCVDKTEK 14 2 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 T(0.031)LS(0.969)KLNLCVDKTEK 103.9 0.0001887 257960000 385640 197550 94696 703310 356460 328740 617280 569090 111280 750950 TRUE FALSE FALSE 471424.2876 220651.754 129727.991 741730.0444 320969.5908 345952.3181 485393.0853 429519.7852 133612.8753 563751.9852 0.83622639 0.391398629 0.23011536 1.315702763 0.569345385 0.613660487 0.861004658 0.76189494 0.237006483 1 19.10470108 TLS(ph)KY(ph)ES(ph)SEIR ddPTM_HeLa_A485_30min_R1 1 TLSKYESSEIR 11 1 A6PWM2;Q6UXH1-3;Q6UXH1-2;Q6UXH1-4;Q6UXH1;Q6UXH1-6;Q6UXH1-5 A6PWM2 CRELD2 Cysteine-rich with EGF-like domain protein 2 3 0 T(0.105)LS(0.895)KY(0.648)ES(0.704)S(0.648)EIR 49.423 0.0073515 0 114130 143300 171380 158360 221910 146820 186720 186270 147630 237710 TRUE FALSE FALSE 139517.8248 160057.6885 234780.5937 167010.8058 199815.8612 154507.2682 146825.7466 140586.9904 177257.9869 178453.2717 0.78181713 0.896916526 1.315641857 0.935879764 1.119709711 0.865813592 0.822768589 0.787808422 0.993301973 1 17.44518683 -6.29064684 23.60946836 0.876228375 1.016574072 0.128723312 0.146911191 664.8806287 537444.5243 0.052830698 0.046602125 5.12E-07 6.29064684 0.140345698 TLS(ph)MIEEEIR ddPTM_HeLa_A485_30min_R1 20 TLSMIEEEIR 10 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 T(0.002)LS(0.998)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;T(0.001)LS(0.999)MIEEEIR;TLS(1)MIEEEIR;T(0.001)LS(0.999)MIEEEIR;T(0.013)LS(0.987)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;TLS(1)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;T(0.01)LS(0.99)MIEEEIR;TLS(1)MIEEEIR;T(0.046)LS(0.954)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;T(0.03)LS(0.97)MIEEEIR;T(0.022)LS(0.978)MIEEEIR ;;;;;;;;;;;;;;;;;;; 284.87 2.72E-34 6627194000 2313331 2699271 2453253 2508849 3419304 2648761 3762712 3820954 2650208 3579830 TRUE FALSE FALSE 2827923.5 3014927.263 3360813.373 2645901.068 3078866.088 2787446.03 2958777.843 2883859.04 3182080.436 2687444.263 1.052272428 1.121856667 1.250561144 0.984541746 1.145648351 1.037210732 1.100963426 1.073086084 1.184054486 1 21.3578034 -5.270436135 24.99422628 1.080559302 1.139592742 0.145400418 0.072980604 1357.883259 3772383.659 0.019819798 0.029912755 5.36E-06 5.270436135 0.05903344 TLS(ph)MIEEEIR ddPTM_HeLa_A486_30min_R1 18 TLSMIEEEIR 10 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 T(0.001)LS(0.999)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;T(0.003)LS(0.997)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;TLS(1)MIEEEIR;T(0.003)LS(0.997)MIEEEIR;T(0.001)LS(0.999)MIEEEIR;TLS(1)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;TLS(1)MIEEEIR;T(0.003)LS(0.997)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;T(0.003)LS(0.997)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;T(0.036)LS(0.964)MIEEEIR ;;;;;;;;;;;;;;;;; 269.91 1.62E-27 7336050000 2722725 2837905 2176542 1052986 3020989 2629083 3131807 3201563 2364432 2947080 TRUE FALSE FALSE 2531876.038 2613019.072 3019357.352 2451404.623 2642068.39 2304733.47 2348195.764 2472636.995 2569382.87 2209111.986 1.14610579 1.182836854 1.366774239 1.109678748 1.195986626 1.043285033 1.062959134 1.119290018 1.163084029 1 21.07503512 -5.881040842 1.826510919 1.086761293 1.220036782 0.378684792 0.076093746 0.380860918 2.608519668 0.027751288 0.033377421 1.32E-06 5.881040842 0.13327549 TLS(ph)MPSGPSGK ddPTM_HeLa_A486_30min_R1 2 TLSMPSGPSGK 11 0 H0YFN7;Q4ADV7-2;Q4ADV7-3;Q4ADV7 H0YFN7 RIC1 RAB6A-GEF complex partner protein 1 1 0 T(0.001)LS(0.976)MPS(0.022)GPS(0.001)GK;TLS(0.998)MPS(0.002)GPSGK ; 100.93 0.0007288 80839000 500300 471220 274600 221640 463820 498770 637600 624120 406330 700400 TRUE FALSE FALSE 465231.5536 433878.811 380932.474 515989.1211 405643.3707 437236.8285 478065.7362 482021.5004 441551.0116 525015.2812 0.886129548 0.826411776 0.725564546 0.982807815 0.77263155 0.832807814 0.910574898 0.918109468 0.841025066 1 19.00199989 -9.719926555 0.245593007 1.084438584 0.82119882 0.300467698 0.069126739 15.76191168 1.050583443 1.100725371 0.126156026 1.91E-10 9.719926555 -0.263239765 TLS(ph)PEFNER ddPTM_HeLa_A485_30min_R1 4 TLSPEFNER 9 0 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 0 T(0.001)LS(0.999)PEFNER;TLS(1)PEFNER;T(0.044)LS(0.956)PEFNER;T(0.003)LS(0.997)PEFNER ;;; 136.53 0.00025697 290560000 655872 715010 583120 704217 710590 703727 755109 896010 572226 1107210 TRUE FALSE FALSE 801768.4637 798624.1997 798840.3536 742686.5915 639841.1646 740573.0576 593773.7935 676262.1426 687066.5094 831202.9237 0.964588118 0.96080533 0.96106538 0.893508156 0.769777327 0.890965415 0.714354794 0.813594519 0.826592989 1 19.6648412 -5.48822533 3.615340978 0.823161813 0.960644001 0.376326843 0.071428461 0.214971384 5.852874899 0.020065423 0.029297945 3.25E-06 5.48822533 0.137482188 TLS(ph)PEFNER ddPTM_HeLa_A486_30min_R1 4 TLSPEFNER 9 0 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 0 TLS(1)PEFNER;TLS(1)PEFNER;TLS(1)PEFNER;T(0.001)LS(0.999)PEFNER ;;; 168.71 7.47E-06 663470000 903320 861830 723120 448375 945350 840550 907780 850270 821550 1256270 TRUE FALSE FALSE 840001.9327 793535.4521 1003131.43 1043839.66 826775.388 736851.4871 680643.8425 656682.0823 892762.6155 941691.8151 0.892013628 0.842670011 1.065243866 1.10847269 0.877968115 0.782476257 0.722788317 0.69734288 0.948041176 1 19.84489546 -5.994236118 24.89757665 0.807362293 0.976222228 0.264357561 0.112746839 179.0598128 773455.4517 0.036263042 0.041000899 1.01E-06 5.994236118 0.168859935 TLS(ph)PGILGR ddPTM_HeLa_A485_30min_R1 1 TLSPGILGR 9 0 A0A096LNZ3;C9JA38;C9JJG6;Q5D0E6-4;Q5D0E6-2;Q5D0E6 A0A096LNZ3 DALRD3 DALR anticodon-binding domain-containing protein 3 1 0 T(0.022)LS(0.978)PGILGR 82.008 0.00686 20450000 67923 82131 79074 65106 85253 68697 83784 91384 70399 92231 TRUE FALSE FALSE 83032.23702 91735.50601 108326.7631 68662.57592 76764.91198 72293.86869 65882.86395 68971.93072 84527.43356 69239.50909 1.199203144 1.324901161 1.564522403 0.991667573 1.108686543 1.044112959 0.951521246 0.996135467 1.220797702 1 16.07930788 -5.279933994 24.99600841 1.043300848 1.35907814 0.639315952 0.109501404 493.7250774 667282.6228 0.031082119 0.046200189 5.25E-06 5.279933994 0.315777293 TLS(ph)PGR ddPTM_HeLa_A485_30min_R1 6 TLSPGR 6 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 T(0.003)LS(0.997)PGR;T(0.047)LS(0.953)PGR;TLS(1)PGR;T(0.002)LS(0.998)PGR;T(0.008)LS(0.992)PGR;TLS(1)PGR ;;;;; 126.28 0.0055647 11748440000 7348860 9610840 9068230 8213460 11259510 8745730 10818220 11227200 8490170 10991760 TRUE FALSE FALSE 8983588.554 10734744.13 12422945.64 8662140.522 10138473.65 9203642.899 8506818.92 8473711.596 10194069.24 8251716.52 1.088693308 1.300910436 1.505498354 1.049738015 1.22865026 1.115361013 1.030915071 1.026902897 1.235387718 1 22.97626283 -5.298275408 24.99529249 1.10261224 1.298621875 0.3673647 0.120311245 608.3781765 412817.1356 0.03416252 0.050672784 5.03E-06 5.298275408 0.196009635 TLS(ph)PGR ddPTM_HeLa_A486_30min_R1 5 TLSPGR 6 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 T(0.044)LS(0.956)PGR;T(0.002)LS(0.998)PGR;T(0.005)LS(0.995)PGR;T(0.041)LS(0.959)PGR;T(0.016)LS(0.984)PGR ;;;; 97.093 0.013206 8757890000 9861600 10683560 8145300 3195330 10522550 9848770 10519670 10251510 9178540 11109460 TRUE FALSE FALSE 9170352.765 9836955.797 11299378.3 7438889.723 9202713.66 8633728.892 7887537.3 7917464.962 9974143.237 8327578.906 1.101202747 1.181250386 1.356862352 0.893283607 1.105088738 1.036763385 0.947158519 0.95075232 1.197724255 1 22.98946569 -5.265480644 24.99998464 1.018003145 1.209919682 0.442695282 0.099944842 316.7618912 1959550.144 0.027593397 0.042713343 5.43E-06 5.265480644 0.191916537 TLS(ph)PGRR ddPTM_HeLa_A485_30min_R1 5 TLSPGRR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 T(0.001)LS(0.999)PGRR;T(0.003)LS(0.997)PGRR;T(0.004)LS(0.996)PGRR;T(0.006)LS(0.994)PGRR;T(0.003)LS(0.997)PGRR ;;;; 74.376 0.010246 6568980000 2040760 2772760 2624570 2069380 3301100 2580850 3289790 3503610 2400770 2998050 TRUE FALSE FALSE 2494720.021 3097010.162 3595507.66 2182424.989 2972430.893 2715979.315 2586899.491 2644344.154 2882582.518 2250691.31 1.108423892 1.376026178 1.597512571 0.969668732 1.320674621 1.206731151 1.149379962 1.174903081 1.280754275 1 21.10193677 -14 0.105777529 0.199475013 1.399299281 0.180025006 0.159786747 292.959634 2.077441117 50.92924659 2.280127001 1.00E-14 14 1.199824268 TLS(ph)PGRR ddPTM_HeLa_A486_30min_R1 6 TLSPGRR 7 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 T(0.004)LS(0.996)PGRR;T(0.002)LS(0.998)PGRR;T(0.005)LS(0.995)PGRR;T(0.011)LS(0.989)PGRR;TLS(1)PGRR;T(0.001)LS(0.999)PGRR ;;;;; 82.287 0.0063372 4902070000 2892310 2955700 2428180 1039147 3305010 2631900 3129230 3222620 2512790 3122280 TRUE FALSE FALSE 2689574.005 2721479.568 3368436.325 2419186.732 2890464.828 2307202.937 2346263.556 2488899.775 2730600.66 2340440.765 1.14917414 1.162806429 1.439231607 1.033645785 1.235008752 0.985798475 1.002487904 1.063432073 1.166703597 1 21.15834882 -5.321284414 24.99992648 1.072831472 1.241646532 0.386796107 0.104101674 263.8942287 110239.7062 0.029497144 0.043751347 4.77E-06 5.321284414 0.168815059 TLS(ph)PTPASATAPTSQGIPT(ph)SDEESTPKK ddPTM_HeLa_A486_30min_R1 1 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 2 0 T(0.457)LS(0.528)PT(0.008)PAS(0.003)AT(0.003)APT(0.001)S(0.001)QGIPT(0.497)S(0.462)DEES(0.02)T(0.019)PKK 53.408 0.024251 235080000 82671 71872 36660 51891 75062 103530 139460 116250 64302 147200 TRUE FALSE FALSE 76876.18981 66176.60097 50855.73379 120804.8704 65647.02403 90757.52122 104565.6329 89782.41272 69875.74913 110340.1619 0.69671993 0.599750805 0.460899576 1.094840431 0.594951312 0.822524815 0.947666119 0.81368752 0.633275753 1 16.75159848 -5.238619153 24.99242252 0.829152852 0.587186184 0.370105978 0.153437034 899.1375397 984722.9334 0.040402012 0.069920134 5.77E-06 5.238619153 -0.241966668 TLS(ph)PTPASATAPTSQGIPTS(ph)DEES(ph)TPKK ddPTM_HeLa_A485_30min_R1 1 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 3 0 T(0.119)LS(0.878)PT(0.003)PASATAPTSQGIPT(0.174)S(0.824)DEES(0.539)T(0.463)PKK 152.31 1.59E-09 267900000 91386 53474 41029 171630 104520 77936 167110 135970 73805 259090 TRUE FALSE FALSE 111714.5004 59727.31914 56207.33446 181005.7123 94113.62181 82016.60845 131405.5833 102623.1443 88616.98652 194503.6312 0.574356889 0.307075599 0.28897833 0.930603255 0.483865629 0.421671348 0.675594499 0.52761557 0.455605821 1 17.56943756 -14 0.31086144 5.264853797 0.496625234 0.398094556 0.176641267 318.1386626 2.885414044 889.0332096 0.172099002 1.00E-14 14 -4.768228563 TLS(ph)PTPASATAPTSQGIPTS(ph)DEES(ph)TPKK ddPTM_HeLa_A486_30min_R1 2 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 3 0 T(0.101)LS(0.899)PT(0.001)PASATAPTSQGIPT(0.144)S(0.853)DEES(0.596)T(0.408)PKK;T(0.451)LS(0.546)PT(0.003)PASATAPTSQGIPT(0.443)S(0.534)DEES(0.534)T(0.489)PKK ; 154.53 1.13E-09 518740000 218294 197705 89045 158653 158014 251340 368370 331610 164604 487640 TRUE FALSE FALSE 202992.7179 182038.1358 123525.6087 369352.2019 138194.4107 220332.2262 276199.9298 256109.642 178872.0073 365531.77 0.555335362 0.498009067 0.337933988 1.01045171 0.378064021 0.602771754 0.755611283 0.700649473 0.489347362 1 18.47963728 -14 0.167081681 2.51524725 0.499267123 0.305757742 0.185308472 166.0210801 1.553976888 83.70388949 0.69180565 1.00E-14 14 -2.015980127 TLS(ph)PTPS(ph)AEGYQDVR ddPTM_HeLa_A486_30min_R1 2 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 2 0 T(0.107)LS(0.885)PT(0.014)PS(0.991)AEGY(0.004)QDVR;T(0.003)LS(0.997)PT(0.002)PS(0.998)AEGY(0.001)QDVR ; 146.3 1.58E-07 650607000 287200 346040 369660 136576 438040 321810 436240 430510 294300 381700 TRUE FALSE FALSE 267068.7631 318618.5301 512802.2518 317955.8302 383096.9386 282108.3541 327088.1379 332492.271 319810.161 286119.8355 0.933415758 1.113584207 1.792263898 1.111268045 1.338938763 0.985979716 1.143185817 1.162073473 1.117749003 1 18.12625999 -6.252797979 24.66586273 1.095763956 1.271418231 0.138873815 0.216563392 1168.652743 3335782.824 0.074095504 0.072944121 5.59E-07 6.252797979 0.175654275 TLS(ph)PTPSAEGYQDVR ddPTM_HeLa_A485_30min_R1 8 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 TLS(0.993)PT(0.007)PSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(0.999)PT(0.001)PSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(0.996)PT(0.004)PSAEGYQDVR ;;;;;;; 339.38 9.95E-91 21096010000 1176945 1497251 1352081 1217358 1763679 1374042 1718354 1776131 1275927 1634237 TRUE FALSE FALSE 1438752.355 1672341.48 1852272.027 1283859.185 1588080.926 1445984.714 1351213.63 1340532.087 1531993.845 1226851.792 1.172718958 1.363116141 1.509776518 1.046466406 1.294435837 1.178614014 1.101366636 1.09266017 1.248719573 1 20.22652955 -5.79506333 1.0478856 1.124032712 1.329710336 0.291762755 0.124790267 0.674401098 1.584903603 0.056517195 0.083156225 1.60E-06 5.79506333 0.205677624 TLS(ph)PTPSAEGYQDVR ddPTM_HeLa_A486_30min_R1 6 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 TLS(1)PTPSAEGYQDVR;TLS(0.999)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;T(0.03)LS(0.969)PTPSAEGYQDVR ;;;;; 379.07 4.61E-119 13592160000 1545658 1614520 1423302 518385 1838970 1514958 1693170 1742120 1310638 1632311 TRUE FALSE FALSE 1437315.356 1486579.555 1974442.652 1206826.478 1608309.235 1328057.885 1269520.957 1345477.306 1424245.157 1223569.701 1.174690216 1.214952899 1.613674031 0.986316085 1.314440226 1.085396184 1.037555079 1.099632743 1.164008193 1 20.22266486 -5.943198779 1.251760739 1.080659495 1.294554475 0.252569127 0.15272558 0.642111727 2.108695193 0.06525375 0.078435846 1.14E-06 5.943198779 0.21389498 TLS(ph)SPSNRPSGETSVPPPPAVGR ddPTM_HeLa_A485_30min_R1 1 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 T(0.104)LS(0.445)S(0.445)PS(0.006)NRPSGETSVPPPPAVGR 55.063 0.00072664 0 36172 40576 33626 44030 50992 46338 55188 57084 35156 49795 TRUE FALSE FALSE 44218.33661 45321.01024 46065.65669 46435.24741 45915.05744 48764.18603 43396.63296 43084.0595 42211.48673 37382.02291 1.18287704 1.212374471 1.232294379 1.242181236 1.228265724 1.304482268 1.160895788 1.15253419 1.129192148 1 15.19005702 -7.935096695 0.939952075 1.003496652 1.230631937 0.800087512 0.035029574 0.24530975 0.489335247 0.034644756 0.012024673 1.16E-08 7.935096695 0.227135285 TLS(ph)SSAQEDIIR ddPTM_HeLa_A485_30min_R1 3 TLSSSAQEDIIR 12 0 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 TLS(0.835)S(0.084)S(0.081)AQEDIIR;TLS(0.482)S(0.482)S(0.035)AQEDIIR;TLS(0.967)S(0.027)S(0.006)AQEDIIR ;; 243.49 6.61E-28 903940000 411640 484620 555480 515570 751200 600380 956280 1062350 529570 748550 TRUE FALSE FALSE 503207.8979 541292.0934 760975.1675 543734.2836 676407.8904 631814.9684 751962.9659 801806.9968 635849.8415 561950.261 0.895466971 0.963238441 1.354168189 0.96758436 1.203679288 1.124325429 1.338130824 1.426829121 1.131505554 1 19.10008292 -3.391431671 0.669846621 1.222550094 2.53E-19 0.281105248 0.149796897 10.67997107 1.540495958 0.062713138 12.97334321 0.00040604 3.391431671 -1.222550094 TLS(ph)SSAQEDIIR ddPTM_HeLa_A486_30min_R1 5 TLSSSAQEDIIR 12 0 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 TLS(0.763)S(0.23)S(0.007)AQEDIIR;TLS(0.983)S(0.014)S(0.002)AQEDIIR;TLS(0.57)S(0.396)S(0.034)AQEDIIR;T(0.001)LS(0.936)S(0.061)S(0.002)AQEDIIR;TLS(0.969)S(0.015)S(0.015)AQEDIIR ;;;; 242.92 7.03E-28 1559170000 992190 1229800 1052320 492280 1524610 1288580 1634520 1675890 1230900 1511110 TRUE FALSE FALSE 922642.6047 1132346.169 1459806.486 1146052.718 1333379.197 1129608.101 1225545.808 1294326.431 1337595.403 1132718.22 0.814538504 0.999671541 1.288764019 1.011772123 1.177149951 0.997254287 1.081951174 1.142672916 1.180872153 1 20.11135758 -4.40889496 3.849050625 1.110768497 0.820657105 0.504663083 0.089258561 0.181302521 4.338418641 0.021560762 0.107988963 3.90E-05 4.40889496 -0.290111392 TLS(ph)SSSMDLSRR ddPTM_HeLa_A485_30min_R1 2 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 T(0.077)LS(0.519)S(0.188)S(0.188)S(0.028)MDLS(0.002)RR;T(0.087)LS(0.507)S(0.178)S(0.178)S(0.048)MDLS(0.001)RR ; 76.588 0.004865 499210000 176065 321020 361580 110360 294160 331540 280270 423980 273510 148116 TRUE FALSE FALSE 215230.0518 358560.4965 495343.4886 116388.6874 264872.3975 348898.9217 220388.0249 319998.2402 328400.9482 111193.4071 1.935636811 3.224656083 4.454791895 1.046722917 2.382087252 3.137766266 1.982024211 2.877852641 2.953421042 1 16.76271172 -10.78136127 2.690228846 0.566598431 2.679140552 0.248087204 0.869906648 26521719.68 15798048.61 74628355.99 0.221900972 1.65E-11 10.78136127 2.11254212 TLS(ph)SSSMDLSRR ddPTM_HeLa_A486_30min_R1 1 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 T(0.087)LS(0.588)S(0.161)S(0.161)S(0.003)MDLSRR 100.11 0.0006276 110440000 46424 52697 42559 20751 76106 37761 59356 67043 38318 53655 TRUE FALSE FALSE 43169.91733 48521.0978 59038.98457 48309.3767 66560.07582 33102.43175 44504.501 51778.77244 41639.43509 40219.43876 1.073359516 1.206409122 1.467921641 1.201144973 1.654923039 0.823045591 1.106542069 1.287406638 1.035306219 1 15.29560533 -6.274920106 24.97417465 1.071928169 1.315930611 0.347694023 0.183879073 1033.194967 1914075.048 0.065100978 0.057723289 5.31E-07 6.274920106 0.244002442 TLSAS(ph)TQDLSPH ddPTM_HeLa_A485_30min_R1 1 TLSASTQDLSPH 12 0 Q6P597-2;Q6P597;Q6P597-3 Q6P597-2 KLC3 Kinesin light chain 3 1 0 TLS(0.002)AS(0.936)T(0.062)QDLSPH 150.78 1.21E-07 140200000 159370 216560 191720 122340 268310 203220 237210 240960 188340 191690 TRUE FALSE FALSE 194821.3067 241884.8082 262645.2061 129023.1244 241596.1143 213860.285 186528.1457 181864.1822 226138.1104 143905.2108 1.353816902 1.680862054 1.825126447 0.896584104 1.678855915 1.486119118 1.296187571 1.263777602 1.571437957 1 17.13475931 -12.63692153 0.153806044 8.79E-10 1.597628798 0.225105983 0.25188945 125.8628891 1.675063087 41.49490952 1.271195495 2.31E-13 12.63692153 1.597628797 TLSDFNSLISS(ph)PHLGR ddPTM_HeLa_A485_30min_R1 2 TLSDFNSLISSPHLGR 16 0 Q9NRJ4 Q9NRJ4 TULP4 Tubby-related protein 4 1 0 TLSDFNSLIS(0.004)S(0.996)PHLGR;TLSDFNSLIS(0.062)S(0.938)PHLGR ; 151.96 3.08E-08 362020000 225048 302624 310425 262358 376368 292749 372963 404807 269332 353391 TRUE FALSE FALSE 275109.1512 338013.2443 425264.1254 276689.9532 338895.4804 308076.885 293276.4082 305527.4485 323384.4619 265297.1274 1.036985036 1.274093118 1.602972974 1.042943646 1.277418583 1.161252246 1.105463942 1.151642506 1.218951992 1 18.01724953 -5.997101707 1.334897423 1.132993732 1.277667116 0.122950307 0.155754149 0.935483987 3.451269708 0.067412393 0.076346792 1.01E-06 5.997101707 0.144673384 TLSDFNSLISS(ph)PHLGR ddPTM_HeLa_A486_30min_R1 1 TLSDFNSLISSPHLGR 16 0 Q9NRJ4 Q9NRJ4 TULP4 Tubby-related protein 4 1 0 TLSDFNSLIS(0.352)S(0.648)PHLGR 133.21 8.56E-06 349340000 146090 159660 139330 46162 190980 129590 165020 158000 154450 153950 TRUE FALSE FALSE 135849.8454 147007.9601 193282.3074 107467.4689 167025.5076 113602.5034 123730.2506 122026.8491 167837.8504 115399.918 1.177209203 1.27390004 1.674891203 0.931261224 1.447362447 0.984424473 1.072186643 1.057425787 1.454401817 1 16.81628267 -5.278020056 24.99551912 1.141774456 1.365190194 0.218017217 0.207806985 1276.973498 1925046.176 0.057096941 0.084955418 5.27E-06 5.278020056 0.223415739 TLSDVEDQKELAS(ph)PVSPELR ddPTM_HeLa_A486_30min_R1 1 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 TLSDVEDQKELAS(1)PVSPELR 188.3 1.79E-19 338040000 331820 288060 190800 149440 342280 367960 465730 477690 254030 459960 TRUE FALSE FALSE 308561.1315 265233.0765 264682.8698 347903.8723 299348.0508 322564.8363 349199.428 368930.4149 276049.5249 344783.0222 0.89494294 0.76927534 0.767679534 1.009051635 0.868221552 0.935558933 1.012809232 1.07003649 0.800647095 1 18.39532921 -5.258454669 24.9856538 0.95731671 0.806496873 0.411392109 0.079971991 249.8292518 2091364.27 0.021805528 0.035777806 5.51E-06 5.258454669 -0.150819837 TLSDVEDQKELASPVS(ph)PELR ddPTM_HeLa_A485_30min_R1 1 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 TLSDVEDQKELAS(0.008)PVS(0.992)PELR 197.73 1.74E-26 843110000 665360 703560 489550 868040 819510 669390 1078800 1128000 625510 1211100 TRUE FALSE FALSE 813367.0365 785835.2218 670654.9169 915458.8272 737916.7069 704438.2253 848305.567 851356.2314 751044.1195 909195.0586 0.894601251 0.864319724 0.737635902 1.006889356 0.811615395 0.774793284 0.933029232 0.936384578 0.826053895 1 19.79423032 -11.71238857 0.260987507 1.228267257 0.850379594 0.214968865 0.077166366 79.33128879 2.263530638 10.22525237 0.10712363 1.94E-12 11.71238857 -0.377887664 TLSDVEDQKELASPVS(ph)PELR ddPTM_HeLa_A486_30min_R1 1 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 TLSDVEDQKELASPVS(1)PELR 120.27 3.08E-06 715670000 619140 567270 311940 275120 539850 580400 833110 731850 436920 792380 TRUE FALSE FALSE 575741.4832 522317.4592 432731.522 640493.2638 472136.9791 508796.1491 624657.0663 565223.7312 474792.5774 593962.8905 0.969322314 0.87937726 0.728549761 1.078338856 0.794893059 0.85661269 1.051676925 0.951614554 0.799364043 1 19.18001327 TLSDYNIQKES(ph)TLHLVLR ddPTM_HeLa_A485_30min_R1 1 TLSDYNIQKESTLHLVLR 18 1 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;M0R2S1;M0R1M6 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 1 0 TLSDYNIQKES(0.664)T(0.336)LHLVLR 167.61 2.13E-12 154260000 84055 90818 82988 95615 145200 107930 155040 260250 90303 144970 TRUE FALSE FALSE 102752.7448 101438.3751 113688.7146 100838.2053 130743.3782 113581.0479 121914.4374 196423.2794 108425.9838 108831.647 0.944143984 0.932066893 1.044629184 0.926552231 1.201336025 1.043639888 1.12021127 1.804836046 0.996272562 1 16.73173861 -6.420358944 1.24270734 1.293065424 0.975272967 0.172464537 0.225967949 0.641324055 2.021344851 0.118300963 0.092655622 3.80E-07 6.420358944 -0.317792457 TLSDYNIQKES(ph)TLHLVLR ddPTM_HeLa_A486_30min_R1 1 TLSDYNIQKESTLHLVLR 18 1 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;M0R2S1;M0R1M6 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 1 0 TLSDYNIQKES(0.772)T(0.228)LHLVLR 160.25 3.57E-12 137260000 67393 86684 87924 58604 116380 97036 140290 123750 64927 79840 TRUE FALSE FALSE 62669.09872 79814.84414 121970.5275 136433.0737 101782.5352 85064.68491 105187.9582 95574.82644 70554.92464 59847.54433 1.0471457 1.333636075 2.038020588 2.279677056 1.700696935 1.421356312 1.757598567 1.596971564 1.178910938 1 15.86900443 -7.821380538 2.809824597 1.005161463 1.675092994 0.32154249 0.328742981 0.32190607 4.833091736 0.341112825 0.094410808 1.51E-08 7.821380538 0.669931531 TLSDYNIQKEST(ph)LHLVLR ddPTM_HeLa_A486_30min_R1 1 TLSDYNIQKESTLHLVLR 18 1 P62979;J3QTR3;A0A2R8Y422;P0CG48;F5H265;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H2Z3;F5GYU3;F5H6Q2;J3QS39;P62987;P0CG47;M0R2S1;M0R1M6 P62979 RPS27A;UBC;UBB;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin 1 0 TLSDYNIQKES(0.356)T(0.644)LHLVLR 190.8 4.37E-18 166310000 123580 135010 114460 95249 182240 190570 272880 258980 119580 147070 TRUE FALSE FALSE 114917.6802 124311.3159 158781.9773 221744.4856 159381.7599 167059.411 204602.5378 200015.9075 129945.2907 110242.7147 1.042406117 1.127614793 1.440294515 2.011420765 1.445735079 1.51537824 1.85592797 1.814323132 1.178719982 1 16.75032379 -4.819623998 3.680292399 1.595336237 1.070556863 0.267447107 0.291855992 0.243671028 6.594399827 0.074911269 0.185925581 1.51E-05 4.819623998 -0.524779374 TLSEYARPHVMS(ph)PGNR ddPTM_HeLa_A485_30min_R1 1 TLSEYARPHVMSPGNR 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 T(0.004)LS(0.004)EYARPHVMS(0.991)PGNR 45.696 0.013499 0 72861 118050 104620 48444 145900 112170 114700 145780 104110 63085 TRUE FALSE FALSE 89068.67808 131854.9206 143323.2916 51090.37305 131373.6837 118043.0478 90193.40799 110027.2264 125003.922 47359.07049 1.880710013 2.784153473 3.02631133 1.078787496 2.773992022 2.492511921 1.904458999 2.323255615 2.639492725 1 15.53135315 -10.27392439 3.907713182 0.998081888 2.326308578 0.347305397 0.543928989 59533905.32 82429270.06 1254123.769 0.132887178 5.32E-11 10.27392439 1.32822669 TLSEYARPHVMS(ph)PTNR ddPTM_HeLa_A485_30min_R1 1 TLSEYARPHVMSPTNR 16 1 Q9P2R6;B1AKN3;Q9P2R6-2 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 TLSEYARPHVMS(0.839)PT(0.161)NR 99.313 0.00026786 327560000 97231 173130 130820 75694 194540 147110 182610 224830 95648 114400 TRUE FALSE FALSE 118859.7005 193376.0475 179215.7619 79828.97155 175170.9145 154812.4521 143593.8817 169690.09 114843.6763 85882.18538 1.383985514 2.251643302 2.086762943 0.929517236 2.039665313 1.802614261 1.671986816 1.975847369 1.337223497 1 16.39007128 -7.9719361 4.617672893 1.002053542 1.77168771 0.323120288 0.362809716 0.189092196 10.05350014 0.343944252 0.089926075 1.07E-08 7.9719361 0.769634168 TLSGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 TLSGSPR 7 0 Q8TDN4;V9GYB4;Q8TDN4-2;Q9NX31 Q8TDN4 CABLES1;OSER1 CDK5 and ABL1 enzyme substrate 1;Oxidative stress-responsive serine-rich protein 1 1 0 TLS(0.002)GS(0.998)PR 88.267 0.0063644 0 182560 156840 171700 56795 165640 160140 160010 156370 163740 165930 TRUE FALSE FALSE 169763.4867 144411.4272 238186.8383 132221.6303 144863.8867 140383.555 119973.8056 120767.9645 177933.115 124380.048 1.364877161 1.161049779 1.914992333 1.063045339 1.164687496 1.128666191 0.964574363 0.970959302 1.430559949 1 16.92439555 TLSGS(ph)PRPK ddPTM_HeLa_A485_30min_R1 1 TLSGSPRPK 9 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 T(0.146)LS(0.118)GS(0.735)PRPK 62.408 0.013028 344070000 363760 331310 247180 384210 398570 351910 485560 484280 270940 490010 TRUE FALSE FALSE 444677.157 370053.8225 338622.168 405198.4194 358886.9713 370335.4634 381816.1393 365509.5707 325315.1728 367859.525 1.208823279 1.005965042 0.920520321 1.101503133 0.97560875 1.006730663 1.037940065 0.993611816 0.884346199 1 18.48879542 -4.265203727 5.441315736 0.993632185 1.216500404 0.574720635 0.056074127 0.102863945 11.59491352 0.013730434 0.085569869 5.43E-05 4.265203727 0.222868219 TLSGS(ph)PRPK ddPTM_HeLa_A486_30min_R1 2 TLSGSPRPK 9 1 Q8TDN4;V9GYB4;Q8TDN4-2 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 T(0.047)LS(0.192)GS(0.761)PRPK;T(0.327)LS(0.111)GS(0.562)PRPK ; 52.693 0.022621 487740000 780360 741270 440730 316550 737320 750660 855400 822880 594000 846810 TRUE FALSE FALSE 725660.7938 682529.0655 611392.4592 736944.3976 644838.4504 658051.2014 641369.8725 635528.1873 645488.3983 634763.2642 1.143199102 1.075249788 0.963181856 1.160975184 1.015872352 1.036687594 1.010407988 1.001205053 1.016896274 1 19.27585911 -5.934995062 24.9999977 1.014429012 1.077693799 0.326405446 0.050245858 81.26216685 31251.39672 0.01551912 0.017597036 1.16E-06 5.934995062 0.063264787 TLSKS(ph)EHSLFQAK ddPTM_HeLa_A485_30min_R1 2 TLSKSEHSLFQAK 13 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 T(0.022)LS(0.435)KS(0.543)EHS(0.001)LFQAK;T(0.001)LS(0.156)KS(0.843)EHSLFQAK ; 163.91 3.85E-12 1382800000 652310 473410 499290 830190 1105990 885200 1583760 1582480 631680 1240130 TRUE FALSE FALSE 797414.1091 528771.1814 683998.1482 875541.1775 995873.7522 931547.7032 1245376.738 1194374.299 758452.3819 930988.4139 0.856524203 0.567967521 0.734701032 0.940442614 1.069695108 1.000600748 1.337693057 1.282909949 0.814674351 1 19.82840369 -5.48406418 1.872848155 1.113759542 0.695286575 0.524335418 0.154042208 0.256557338 1.795893576 0.05077917 0.083768308 3.28E-06 5.48406418 -0.418472967 TLSKS(ph)EHSLFQAK ddPTM_HeLa_A486_30min_R1 2 TLSKSEHSLFQAK 13 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 TLS(0.008)KS(0.953)EHS(0.039)LFQAK;T(0.223)LS(0.143)KS(0.614)EHS(0.021)LFQAK ; 202.34 8.08E-22 863610000 1115380 1037780 673860 497340 1572220 1425860 1943890 1978950 1049450 1410270 TRUE FALSE FALSE 1037197.622 955542.5333 934796.6386 1157832.654 1375017.507 1249951.89 1457508.162 1528386.285 1140417.171 1057129.213 0.981145549 0.903903252 0.884278504 1.095261242 1.300709025 1.182402184 1.378741732 1.445789471 1.078786923 1 20.0117203 -5.510012242 3.266638582 1.257784162 0.923030008 0.532255241 0.127515363 0.172658063 3.811159426 0.037727277 0.054637312 3.09E-06 5.510012242 -0.334754154 TLSNAEDYLDDEDS(ph)D ddPTM_HeLa_A485_30min_R1 2 TLSNAEDYLDDEDSD 15 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 1 0 TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D ; 426.22 1.99E-171 1452060000 1547540 1981380 2035090 1727660 2419800 1899040 2475000 2782600 1850000 2286700 TRUE FALSE FALSE 1891784.934 2213085.155 2787954.478 1822037.691 2178876.216 1998470.798 1946196.031 2100162.987 2221278.031 1716667.774 1.102009931 1.289174987 1.624050105 1.061380495 1.269247462 1.164156996 1.133705695 1.223395126 1.293947533 1 20.71117943 TLSNAEDYLDDEDS(ph)D ddPTM_HeLa_A486_30min_R1 2 TLSNAEDYLDDEDSD 15 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 1 0 TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D ; 503.48 4.47E-266 1340290000 1717890 2098750 1759860 672790 2472100 2003870 2222300 2320700 1771530 2181400 TRUE FALSE FALSE 1597474.782 1932437.406 2441324.923 1566289.121 2162026.167 1756652.893 1666257.035 1792327.271 1925087.647 1635163.241 0.976951256 1.18180091 1.493016025 0.957879361 1.322208151 1.074298179 1.019015712 1.096115192 1.177306093 1 20.64100324 -6.405439664 22.64160328 1.075927996 1.191244012 0.122166301 0.151122541 20.93258785 3974.570983 0.05258512 0.046375766 3.93E-07 6.405439664 0.115316016 TLSS(ph)PSNRPSGETSVPPPPAVGR ddPTM_HeLa_A485_30min_R1 4 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 TLS(0.023)S(0.953)PS(0.023)NRPSGETSVPPPPAVGR;T(0.001)LS(0.017)S(0.968)PS(0.014)NRPSGETSVPPPPAVGR;TLS(0.032)S(0.927)PS(0.041)NRPSGETSVPPPPAVGR;T(0.001)LS(0.296)S(0.699)PS(0.005)NRPSGETSVPPPPAVGR ;;; 216.69 3.28E-38 9895100000 1043640 1333450 1229960 1171800 1706600 1218680 1594080 1621460 1211460 1456980 TRUE FALSE FALSE 1275794.117 1489385.378 1684973.387 1235812.467 1536684.912 1282488.2 1253491.786 1223794.393 1454588.91 1093781.7 1.16640653 1.361684309 1.540502449 1.129852938 1.404928344 1.172526657 1.146016418 1.118865303 1.329871317 1 20.0608934 -6.345013099 7.292750594 1.159333275 1.324348869 0.286357714 0.131824854 0.380482601 29.06241828 0.045612256 0.040172394 4.52E-07 6.345013099 0.165015594 TLSS(ph)PSNRPSGETSVPPPPAVGR ddPTM_HeLa_A486_30min_R1 4 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 TLS(0.03)S(0.858)PS(0.111)NRPSGETSVPPPPAVGR;TLS(0.02)S(0.887)PS(0.093)NRPSGETSVPPPPAVGR;TLS(0.037)S(0.962)PSNRPSGETSVPPPPAVGR;T(0.001)LS(0.003)S(0.993)PS(0.004)NRPSGETSVPPPPAVGR ;;; 224.91 1.72E-38 10303900000 1102360 1121080 853960 420153 1323370 1083840 1237550 1248530 946020 1267890 TRUE FALSE FALSE 1025090.257 1032241.538 1184636.182 978137.4174 1157380.595 950126.8405 927901.9005 964266.9742 1028021.775 950402.0914 1.078585859 1.086110339 1.246457886 1.029182728 1.217779932 0.999710385 0.976325609 1.014588439 1.081670363 1 19.85817849 -6.287948671 24.82751378 1.012987386 1.129783406 0.447048445 0.065126264 646.783996 605748.9419 0.022189602 0.019574938 5.15E-07 6.287948671 0.11679602 TLSS(ph)SAQEDIIR ddPTM_HeLa_A485_30min_R1 1 TLSSSAQEDIIR 12 0 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 TLS(0.062)S(0.874)S(0.065)AQEDIIR 247.73 3.48E-28 518060000 242060 302240 300940 340130 402010 379950 536580 570140 276870 398390 TRUE FALSE FALSE 295905.4119 337584.3389 412270.2292 358710.4406 361984.4729 399843.5945 421935.2995 430312.2711 332435.2694 299078.7048 0.989389773 1.128747495 1.378467348 1.19938476 1.210331819 1.336917634 1.410783492 1.438792746 1.111531059 1 18.19016566 -4.535741965 4.404965197 1.280325737 1.012928253 0.287812799 0.132157894 0.20412631 9.623750466 0.03314001 0.112520509 2.91E-05 4.535741965 -0.267397484 TLSSFFT(ph)PR ddPTM_HeLa_A485_30min_R1 5 TLSSFFTPR 9 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TLSSFFT(1)PR;TLSSFFT(1)PR;TLSSFFT(1)PR;TLSSFFT(1)PR;TLSSFFT(1)PR ;;;; 218.43 2.70E-11 1576760000 1176230 1462030 1342880 1105130 1784720 1412950 1797860 1810220 1163660 1436800 TRUE FALSE FALSE 1437878.306 1633001.691 1839667.194 1165500.454 1607027.01 1486929.877 1413732.524 1366260.707 1397195.888 1078632.202 1.333057091 1.513955996 1.705555601 1.080535563 1.489874868 1.378532807 1.310671535 1.266660409 1.295340418 1 20.04077158 -9.640106473 0.174206209 0.683807178 1.552259749 0.422430287 0.147947553 17.58918804 0.780232779 3.444551276 0.698804269 2.29E-10 9.640106473 0.868452571 TLSSFFT(ph)PR ddPTM_HeLa_A486_30min_R1 4 TLSSFFTPR 9 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 TLSSFFT(1)PR;TLSSFFT(1)PR;TLSSFFT(1)PR;TLSSFFT(1)PR ;;; 213.81 5.06E-10 927819000 494045 541693 466268 169367 608861 472728 565723 572989 459261 514145 TRUE FALSE FALSE 459414.9968 498767.2739 646819.4567 394294.9353 532491.976 414407.6257 424173.1218 442531.913 499070.1133 385399.7455 1.192048002 1.294155691 1.67830795 1.023080425 1.381661462 1.075266994 1.10060561 1.148241321 1.294941471 1 18.55599609 -5.294956333 24.99910236 1.15738198 1.378769417 0.324194503 0.15931971 767.8032257 572675.6079 0.044201403 0.065565821 5.07E-06 5.294956333 0.221387437 TLSSS(ph)SMDLSR ddPTM_HeLa_A485_30min_R1 6 TLSSSSMDLSR 11 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 TLSS(0.047)S(0.941)S(0.011)MDLSR;TLSS(0.015)S(0.63)S(0.355)MDLSR;TLSS(0.02)S(0.974)S(0.007)MDLSR;TLSS(0.1)S(0.893)S(0.007)MDLSR;TLSS(0.007)S(0.987)S(0.006)MDLSR;TLSS(0.021)S(0.932)S(0.047)MDLSR ;;;;; 283.95 4.11E-35 3947770000 3964890 4325660 4389390 3789560 6135740 3767290 5616840 5738900 3908890 4396080 TRUE FALSE FALSE 4846866.102 4831508.309 6013208.019 3996574.067 5524844.182 3964539.479 4416756.249 4331425.777 4693368.369 3300218.16 1.468650213 1.463996643 1.822063793 1.211002992 1.674084534 1.201296183 1.338322509 1.3124665 1.422138823 1 21.65412997 -12.19307054 0.102549101 8.35E-15 1.775203709 0.418339448 0.171979034 105.7825867 1.105822142 26.13345881 2.964415486 6.41E-13 12.19307054 1.775203709 TLSSS(ph)SMDLSR ddPTM_HeLa_A486_30min_R1 4 TLSSSSMDLSR 11 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 TLSS(0.018)S(0.979)S(0.003)MDLSR;TLSS(0.007)S(0.946)S(0.047)MDLSR;TLSS(0.45)S(0.548)S(0.002)MDLSR;TLSS(0.005)S(0.993)S(0.002)MDLSR ;;; 292.08 1.05E-43 4490570000 3845510 4949510 4711770 1691460 5475900 4808630 5558360 5531540 3976350 4097860 TRUE FALSE FALSE 3575959.607 4557292.802 6536293.53 3937804.362 4789061.561 4215390.121 4167599.538 4272129.095 4321023.22 3071729.183 1.164151979 1.483624542 2.127887304 1.281950369 1.559076753 1.372318284 1.356760082 1.39078963 1.40670709 1 21.5506196 -8.805910492 0.35226016 0.914609304 1.551384862 0.263068869 0.241648111 5.380123873 1.077868063 0.995183701 0.228215452 1.56E-09 8.805910492 0.636775558 TLSSS(ph)SMDLSRR ddPTM_HeLa_A485_30min_R1 1 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 T(0.306)LS(0.238)S(0.077)S(0.365)S(0.014)MDLSRR 84.508 0.0020432 209180000 66286 98743 92119 45894 122800 106270 128330 182430 83035 57813 TRUE FALSE FALSE 81031.09202 110290.1349 126197.6515 48401.07301 110573.6008 111834.1329 100911.2471 137688.7565 99699.36286 43401.28307 1.867020657 2.541172221 2.907694026 1.115199127 2.547703501 2.57674716 2.325075205 3.172458202 2.29715243 1 15.40545007 TLSVAAAFNEDEDS(ph)EPEEMPPEAK ddPTM_HeLa_A485_30min_R1 6 TLSVAAAFNEDEDSEPEEMPPEAK 24 0 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;T(0.001)LS(0.001)VAAAFNEDEDS(0.998)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK ;;;;; 145.03 1.93E-09 864812000 400441 398514 319230 508582 518470 426244 661199 670732 374902 730463 TRUE FALSE FALSE 489517.7189 445116.7457 437326.4613 536364.5469 466849.3063 448561.4767 519928.4322 506233.9253 450141.3926 548372.0173 0.892674505 0.811705798 0.797499594 0.978103422 0.851336851 0.817987539 0.94813086 0.923157837 0.820868641 1 19.06479543 -13.99999999 0.165466946 1.477870357 0.840678884 0.289366267 0.059698674 173.7500805 1.619705474 27.34014607 0.236058008 1.00E-14 13.99999999 -0.637191473 TLSVAAAFNEDEDS(ph)EPEEMPPEAK ddPTM_HeLa_A486_30min_R1 7 TLSVAAAFNEDEDSEPEEMPPEAK 24 0 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;T(0.002)LS(0.002)VAAAFNEDEDS(0.995)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK ;;;;;; 218.22 3.15E-38 1400391000 1152664 1036146 602254 602264 1076423 1189211 1428614 1376168 888572 1588220 TRUE FALSE FALSE 1071868.206 954038.0174 835462.8777 1402101.029 941407.9901 1042498.238 1071159.667 1062844.588 965594.1364 1190519.374 0.900336634 0.801362866 0.701763361 1.177722143 0.790754027 0.875666755 0.899741482 0.89275707 0.811069653 1 20.18315967 -11.57560763 2.127505968 3.125362463 0.873332054 0.094902801 0.118226029 5434989.98 293311.0953 56472298.05 0.028915485 2.66E-12 11.57560763 -2.252030409 TLSYLLPAIVHINHQPFLER ddPTM_HeLa_A485_30min_R1 1 TLSYLLPAIVHINHQPFLER 20 0 P17844;J3KTA4;J3QRQ7;J3QRN5 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 61.102 0.011532 143990000 10786 12191 11566 9758.4 14944 13189 18470 17206 8383.4 13969 FALSE FALSE TRUE 13185.30849 13616.6314 15844.7447 10291.47668 13456.12289 13879.55565 14523.73361 12986.20152 10065.87148 10486.78538 1.257326055 1.298456191 1.510924857 0.981375732 1.283150403 1.323528149 1.384955741 1.238339591 0.959862448 1 13.35628488 -7.707401104 4.776787353 0.977126767 1.290087239 0.489027045 0.12531004 0.161466633 7.407485179 0.09770992 0.032386529 1.96E-08 7.707401104 0.312960471 TLSYLLPAIVHINHQPFLER ddPTM_HeLa_A486_30min_R1 1 TLSYLLPAIVHINHQPFLER 20 0 P17844;J3KTA4;J3QRQ7;J3QRN5 P17844 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 48.112 0.031545 144300000 3691.6 5044.2 4692.6 2399.3 6230.3 5294.6 6528.5 5894.9 5606.2 6639.9 FALSE FALSE TRUE 3432.837903 4644.479221 6509.700392 5585.691654 5448.837679 4641.406084 4895.000249 4552.759955 6092.14993 4977.225822 0.689709092 0.933146172 1.307897336 1.122249995 1.09475396 0.932528732 0.983479638 0.914718383 1.224005128 1 12.28112613 -4.389833654 3.851107124 1.066469217 0.692794142 0.487210844 0.119321466 0.207339358 4.866965489 0.031653187 0.163234831 4.08E-05 4.389833654 -0.373675075 TLT(ph)EPSVDFNHSDDFTPISTVQK ddPTM_HeLa_A485_30min_R1 2 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 T(0.003)LT(0.996)EPS(0.001)VDFNHSDDFTPISTVQK;T(0.028)LT(0.97)EPS(0.002)VDFNHSDDFTPISTVQK ; 254.71 6.54E-61 2459000000 1080330 865080 693660 1219870 1182880 872930 1414090 1141650 723650 1479500 TRUE FALSE FALSE 1320645.681 966243.5808 950273.6996 1286508.409 1065108.314 918635.265 1111958.119 861658.5475 868879.9173 1110687.878 1.189034028 0.869950595 0.855572225 1.158298775 0.958962761 0.827086784 1.001143653 0.775788198 0.782289907 1 20.08302202 -6.011714911 23.91060444 0.873439254 1.003834433 0.224668682 0.122630831 534.3011678 1090533.579 0.039664422 0.041897601 9.73E-07 6.011714911 0.13039518 TLT(ph)EPSVDFNHSDDFTPISTVQK ddPTM_HeLa_A486_30min_R1 3 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 T(0.023)LT(0.84)EPS(0.137)VDFNHSDDFTPISTVQK;T(0.13)LT(0.82)EPS(0.05)VDFNHSDDFTPISTVQK;T(0.002)LT(0.956)EPS(0.042)VDFNHSDDFTPISTVQK ;; 273 1.33E-74 3201830000 410670 415670 239937 152078 391000 455800 544770 520620 300040 469590 TRUE FALSE FALSE 381884.1537 382730.7954 332847.0321 354045.2696 341957.1341 399568.0302 408462.784 402086.1911 326047.7088 352001.6075 1.08489321 1.087298431 0.945583841 1.005805832 0.971464694 1.135131266 1.160400337 1.142285099 0.92626767 1 18.42522249 -6.260725274 24.99993731 1.087183659 1.017990341 0.092238773 0.078119253 135.181728 4732638.891 0.02737018 0.025880103 5.49E-07 6.260725274 -0.069193317 TLT(ph)PPLRR ddPTM_HeLa_A485_30min_R1 3 TLTPPLRR 8 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.27)LT(0.73)PPLRR;T(0.381)LT(0.619)PPLRR;T(0.063)LT(0.937)PPLRR ;; 110.53 0.0010407 3913360000 540290 643170 545630 723680 860730 655800 919170 892500 578890 958550 TRUE FALSE FALSE 660475.6465 718383.1367 747481.2426 763212.8059 775032.699 690136.6739 722781.8206 673612.9756 695067.9131 719601.1258 0.91783576 0.998307411 1.038743848 1.060605353 1.077030971 0.959054467 1.00442008 0.936092165 0.965907206 1 19.45683792 -6.310407911 24.99768734 0.97105836 1.020846033 0.207366391 0.04418244 629.8123204 321507.4764 0.01663421 0.014670017 4.89E-07 6.310407911 0.049787673 TLT(ph)PPLRR ddPTM_HeLa_A486_30min_R1 4 TLTPPLRR 8 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.103)LT(0.897)PPLRR;T(0.173)LT(0.827)PPLRR;T(0.436)LT(0.564)PPLRR;T(0.386)LT(0.614)PPLRR ;;; 109.79 0.0010698 5796290000 1022850 1046110 713220 449900 1129910 1082230 1329160 1317600 880458 1356540 TRUE FALSE FALSE 951153.497 963212.4337 989397.8847 1047389.937 988186.1518 948715.4659 996590.1096 1017611.243 956776.8084 1016853.554 0.93538887 0.947247939 0.972999387 1.030030266 0.971807737 0.932991247 0.980072406 1.000745131 0.940918979 1 19.95568049 -1.000042121 0.004510601 1.877256773 0.014525367 0.104206831 0.029139189 176014.8837 61.57455106 11891.17512 13589.63122 0.099990302 1.000042121 -1.862731406 TLTAVHDAILEDLVFPSEIVGK ddPTM_HeLa_A486_30min_R1 1 TLTAVHDAILEDLVFPSEIVGK 22 0 P62081;B5MCP9;A0A2R8Y623 P62081 RPS7 40S ribosomal protein S7 0 0 113.53 0.00036512 14464000 46929 51183 34214 24375 99647 49563 58186 59828 42186 58904 FALSE FALSE TRUE 43639.51944 47127.07267 47462.57708 56746.23184 87148.34409 43448.42098 43627.24737 46206.47044 45842.71645 44154.055 0.988346811 1.067332834 1.07493133 1.285187325 1.973733649 0.984018817 0.988068873 1.046483057 1.038244765 1 15.43025832 TLTDEVNS(ph)PDS(ph)DRR ddPTM_HeLa_A485_30min_R1 1 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 T(0.017)LTDEVNS(0.983)PDS(1)DRR 113.47 0.00010048 213660000 146620 194650 206200 177710 234650 183090 233020 232890 192980 225590 TRUE FALSE FALSE 179235.1132 217412.6243 282481.9607 187417.8473 211287.4221 192676.3093 183233.3734 175773.3623 231709.3159 169354.5647 1.058342381 1.283771859 1.667991419 1.106659556 1.24760394 1.137709572 1.081951194 1.037901533 1.368190555 1 17.36968735 TLTDEVNS(ph)PDS(ph)DRR ddPTM_HeLa_A486_30min_R1 1 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 T(0.36)LT(0.015)DEVNS(0.625)PDS(1)DRR 137.32 1.08E-05 0 289780 318230 266720 99923 388720 312940 316120 367250 280550 327620 TRUE FALSE FALSE 269467.9184 293012.2958 370001.127 232625.7938 339963.1129 274332.6445 237023.4324 283635.192 304868.2999 245581.8196 1.097263303 1.193135128 1.506630775 0.947243547 1.384317103 1.117072286 0.965150567 1.154951912 1.241412334 1 17.90584424 -6.495141189 24.68097982 1.094408494 1.226708433 0.145992169 0.158138247 1245.744688 1108470.033 0.054576528 0.048008863 3.20E-07 6.495141189 0.132299939 TLTDEVNS(ph)PDSDRR ddPTM_HeLa_A485_30min_R1 2 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 TLTDEVNS(0.975)PDS(0.025)DRR;TLTDEVNS(1)PDSDRR ; 196.71 2.11E-19 9854450000 501780 689870 671900 533540 796580 618250 809320 829670 607530 753220 TRUE FALSE FALSE 613399.2299 770544.2954 920463.7701 562685.9392 717269.6982 650620.614 636402.1705 626192.1316 729455.6984 565456.116 1.084786622 1.36269513 1.627825297 0.995100987 1.268479866 1.150612038 1.12546695 1.107410662 1.29003061 1 19.10905554 -5.283334141 24.99949286 1.144303046 1.358861715 0.314683981 0.151317552 961.7900328 1098171.944 0.042173098 0.062608761 5.21E-06 5.283334141 0.214558669 TLTDEVNS(ph)PDSDRR ddPTM_HeLa_A486_30min_R1 5 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR;TLTDEVNS(1)PDSDRR ;;;; 237 2.04E-35 9406510000 1863560 2137290 1643250 628475 2376650 1954720 2154330 2201230 1755110 2106460 TRUE FALSE FALSE 1732934.067 1967923.357 2279560.408 1463121.561 2078548.396 1713566.521 1615293.848 1700057.982 1907244.348 1578988.705 1.097496177 1.246318831 1.443683796 0.926619397 1.316379521 1.085230385 1.022992655 1.076675201 1.207889798 1 20.59056942 -5.96503071 1.05009956 1.081321452 1.22922573 0.143357558 0.139396034 1.01061063 2.387889965 0.06708035 0.081823591 1.08E-06 5.96503071 0.147904279 TLTDEVNSPDS(ph)DRR ddPTM_HeLa_A485_30min_R1 1 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 TLTDEVNS(0.063)PDS(0.937)DRR 189.11 3.28E-17 3601400000 876950 1093400 1149400 845480 1356200 902490 1206500 1373900 948660 1129400 TRUE FALSE FALSE 1072024.502 1221263.619 1574610.891 891666.4315 1221171.966 949742.9809 948721.4188 1036948.871 1139047.36 847861.3651 1.264386545 1.440404846 1.857156082 1.051665364 1.440296747 1.12016306 1.11895819 1.223017009 1.343435858 1 19.69346886 -5.287074285 24.99906649 1.199793489 1.512624867 0.408609739 0.184197963 759.6182714 740775.2828 0.051360992 0.076213502 5.16E-06 5.287074285 0.312831378 TLTDEVNSPDS(ph)DRR ddPTM_HeLa_A486_30min_R1 1 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 TLTDEVNS(0.036)PDS(0.964)DRR 189.52 3.11E-17 3800700000 2268700 2312900 2072100 695460 2571500 2140900 2551500 2597900 2021900 2468100 TRUE FALSE FALSE 2109675.846 2129617.381 2874472.613 1619066.027 2248958.492 1876777.525 1913087.713 2006414.882 2197159.92 1850071.695 1.14032113 1.15109992 1.553708767 0.87513691 1.215606129 1.014435024 1.034061392 1.084506555 1.187607986 1 20.81914975 -5.278937301 24.99993254 1.065944645 1.268648996 0.348480824 0.13911007 946.8675921 1352822.929 0.038212243 0.056833153 5.26E-06 5.278937301 0.202704352 TLTEPS(ph)VDFNHSDDFTPISTVQK ddPTM_HeLa_A486_30min_R1 1 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 T(0.003)LT(0.096)EPS(0.901)VDFNHSDDFTPISTVQK 258.44 2.91E-61 153180000 151110 154780 91114 58065 155640 161320 198620 181570 118500 169540 TRUE FALSE FALSE 140517.9693 142514.6691 126395.7809 135178.2544 136118.1799 141417.9786 148923.1752 140230.4746 128771.6754 127086.0805 1.105691267 1.121402663 0.994568252 1.063674747 1.071070722 1.112773154 1.171829162 1.103429063 1.013263411 1 16.9554465 -7.797136121 6.648062268 1.004419283 1.092304498 0.388878095 0.043349394 0.231009919 28.46526132 0.044261493 0.012005095 1.60E-08 7.797136121 0.087885215 TLTGDVKT(ph)SPPR ddPTM_HeLa_A486_30min_R1 1 TLTGDVKTSPPR 12 1 H3BSX7;H3BNB8;H3BVH0;H3BRV2;H3BM79;Q9H8T0;Q9H8T0-2 H3BSX7 AKTIP AKT-interacting protein 1 0 TLTGDVKT(0.603)S(0.396)PPR 66.215 0.019531 177090000 386240 314950 221810 201830 425480 383310 517450 520410 255350 500810 TRUE FALSE FALSE 359166.5705 289992.215 307700.7723 469870.4399 372112.331 336021.1094 387978.537 401924.0035 277483.9436 375403.9163 0.956747 0.772480527 0.819652537 1.251639686 0.991231883 0.895092179 1.033496243 1.070644141 0.739161025 1 18.51808418 TLTGDVKTS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 TLTGDVKTSPPR 12 1 H3BSX7;H3BNB8;H3BVH0;H3BRV2;H3BM79;Q9H8T0;Q9H8T0-2 H3BSX7 AKTIP AKT-interacting protein 1 0 TLTGDVKT(0.189)S(0.81)PPR 57.328 0.017503 529660000 343080 366660 290440 413910 526850 421230 626900 616730 285420 532730 TRUE FALSE FALSE 419396.9624 409537.6975 397885.8422 436520.8552 474394.9641 443284.9515 492957.6937 465476.0005 342701.176 399930.2152 1.04867536 1.024022897 0.994888176 1.091492562 1.186194356 1.108405753 1.232609278 1.163893056 0.856902437 1 18.60938876 -5.383166596 5.564648947 1.109927929 1.023271905 0.071370841 0.1007061 0.487599978 20.1590348 0.028836265 0.043126275 4.14E-06 5.383166596 -0.086656024 TLTGDVKTS(ph)PPR ddPTM_HeLa_A486_30min_R1 3 TLTGDVKTSPPR 12 1 H3BSX7;H3BNB8;H3BVH0;H3BRV2;H3BM79;Q9H8T0;Q9H8T0-2 H3BSX7 AKTIP AKT-interacting protein 1 0 TLTGDVKT(0.049)S(0.95)PPR;TLTGDVKT(0.114)S(0.886)PPR;TLTGDVKT(0.149)S(0.851)PPR ;; 91.307 0.00098858 1206980000 1229750 1047410 681070 623450 1366710 1223480 1714990 1715600 864680 1670360 TRUE FALSE FALSE 1143550.875 964409.417 944798.5437 1451423.107 1195284.488 1072539.477 1285881.363 1324995.331 939631.1586 1252090.984 0.913312922 0.770239088 0.754576589 1.159199392 0.954630696 0.856598674 1.026987159 1.058226078 0.750449585 1 20.25590797 -5.2210951 24.99288603 0.971446691 0.80846246 0.300516069 0.111513554 638.4845077 395534.0562 0.02984787 0.051697207 6.01E-06 5.2210951 -0.162984231 TLTLVDTGIGMTK ddPTM_HeLa_A485_30min_R1 2 TLTLVDTGIGMTK 13 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ; ; 258.48 2.19E-39 61437000 67108 77296 73095 85356 112276 83484 103896 112030 76255 122802 FALSE FALSE TRUE 82035.94308 86335.09481 100135.8822 90018.78215 101097.4072 87855.09315 81697.77085 84554.46684 91558.67905 92189.7214 0.889859974 0.936493716 1.086193566 0.976451396 1.096623416 0.952981437 0.886191753 0.917178895 0.99315496 1 16.49231829 -6.501634924 24.90778369 0.938994912 1.000280487 0.105611113 0.065887274 1423.485965 1669001.08 0.024061084 0.021007818 3.15E-07 6.501634924 0.061285576 TLTSRGS(ph)MGR ddPTM_HeLa_A485_30min_R1 1 TLTSRGSMGR 10 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 T(0.002)LT(0.007)S(0.043)RGS(0.947)MGR 47.189 0.027364 56679000 12830 22859 18231 13236 25534 30994 38337 43743 23570 17749 TRUE FALSE FALSE 15683.98924 25532.1612 24975.40556 13959.04916 22991.7453 32616.79791 30145.98677 33014.96066 28300.2828 13324.50095 1.177078924 1.916181424 1.874397072 1.047622663 1.725523935 2.447881391 2.262447718 2.477763392 2.123928162 1 13.70179388 -6.063723345 6.704515335 2.162047799 1.538867976 0.229075647 0.465956783 0.312110124 27.25584265 0.147792644 0.149000894 8.64E-07 6.063723345 -0.623179823 TLTTGSSAYLWKPPS(ph)R ddPTM_HeLa_A486_30min_R1 1 TLTTGSSAYLWKPPSR 16 1 Q9BQS8;Q9BQS8-4;Q9BQS8-3;Q9BQS8-2 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 0 TLTTGSSAYLWKPPS(1)R 156.5 2.27E-08 0 52131 49790 26816 28620 51896 56841 68145 62105 47263 86144 TRUE FALSE FALSE 48476.8861 45844.45907 37199.87336 66628.80637 45386.71977 49828.53534 51094.40024 47965.04724 51359.79489 64572.9817 0.750730179 0.709963484 0.576090377 1.031837227 0.702874772 0.771662296 0.791265927 0.742803662 0.795375923 1 15.97864303 -14 0.218915934 2.188362899 0.733014157 0.314294848 0.106818405 190.1755129 1.902730004 99.64184891 0.206490604 1.00E-14 14 -1.455348742 TLVITSTPAS(ph)PNR ddPTM_HeLa_A486_30min_R1 2 TLVITSTPASPNR 13 0 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 0 TLVITSTPAS(1)PNR;TLVIT(0.194)S(0.162)T(0.115)PAS(0.528)PNR ; 137.93 6.70E-06 344920000 455410 430760 464310 177630 444880 423840 444620 430830 342610 437370 TRUE FALSE FALSE 423488.1107 396625.0088 644103.2667 413531.6169 389079.0021 371550.9301 333371.3733 332739.414 372307.7107 327849.7052 1.291714173 1.209776927 1.964629696 1.261345093 1.186760262 1.13329652 1.016842071 1.014914483 1.135604836 1 18.32267507 -5.681831739 2.975414528 1.074107947 1.475834949 0.457443967 0.196114888 0.238882927 4.268237507 0.063101103 0.082657353 2.08E-06 5.681831739 0.401727002 TLVLDFETEGERNS(ph)PNPR ddPTM_HeLa_A485_30min_R1 2 TLVLDFETEGERNSPNPR 18 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 TLVLDFETEGERNS(1)PNPR;TLVLDFETEGERNS(1)PNPR ; 122.3 9.08E-06 145340000 112976 155840 138333 115340 183983 147079 157321 170545 115563 140846 TRUE FALSE FALSE 138107.1214 174064.1324 189508.1332 121640.7321 165665.0065 154779.829 123708.0832 128718.5713 138755.4341 105735.6843 1.306154326 1.646219378 1.792281712 1.150422707 1.566784266 1.463837209 1.169974772 1.21736169 1.312285772 1 16.69010282 -7.188373274 0.420038027 1.013401888 1.571259019 0.425214599 0.178996449 1.019834511 0.465982366 0.206702404 0.176431808 6.48E-08 7.188373274 0.557857131 TLVLDFETEGERNS(ph)PNPR ddPTM_HeLa_A486_30min_R1 2 TLVLDFETEGERNSPNPR 18 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 TLVLDFETEGERNS(1)PNPR;TLVLDFETEGERNS(1)PNPR ; 211.17 4.99E-27 0 142552 150093 122896 52243 170651 140472 165356 164757 131850 128543 TRUE FALSE FALSE 132559.8409 138199.0841 170484.6225 121624.3442 149246.3603 123141.9929 123982.1798 127245.4277 143278.8642 96354.99613 1.375744344 1.434270039 1.769338688 1.262252598 1.548921865 1.278003195 1.286722898 1.320589828 1.486989465 1 16.55607185 -6.271684575 24.44734328 1.295264292 1.479857996 0.27045386 0.165466236 793.1349754 1892592.966 0.056201493 0.050129175 5.35E-07 6.271684575 0.184593705 TLVLLMGK ddPTM_HeLa_A485_30min_R1 8 TLVLLMGK 8 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 0 ;;;;;;; ;;;;;;; 185.42 1.90E-06 2803964000 6288320 6663850 5888640 7353580 9344650 7134420 9891450 9563000 5729540 9741550 FALSE FALSE TRUE 7687135.09 7443129.29 8067092.983 7755287.455 8414263.835 7507967.199 7778060.902 7217659.256 6879406.124 7313160.865 1.051137153 1.017771854 1.103092511 1.060456292 1.150564577 1.026637775 1.063570328 0.986941131 0.940688473 1 22.80206367 -7.292371295 2.953122736 0.967432983 1.069641091 0.551889248 0.038017483 0.201580715 3.500224679 0.024051553 0.010651464 5.10E-08 7.292371295 0.102208107 TLVLLMGK ddPTM_HeLa_A486_30min_R1 6 TLVLLMGK 8 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 0 ;;;;; ;;;;; 162.31 0.00020844 2853800000 8064340 8017700 5449670 3011200 8317000 8131790 10196520 9401940 7080850 9503460 FALSE FALSE TRUE 7499071.41 7382348.252 7559928.171 7010225.778 7273804.307 7128572.428 7645242.848 7261323.505 7694623.779 7123731.759 1.052688628 1.036303514 1.061231448 0.9840665 1.021066564 1.000679513 1.07320757 1.01931456 1.080139461 1 22.76420176 -6.755538679 24.99924252 1.044774943 1.025944393 0.070388143 0.030324411 389.7580271 1651289.416 0.011595532 0.008734196 1.76E-07 6.755538679 -0.01883055 TLVSVTK ddPTM_HeLa_A485_30min_R1 2 TLVSVTK 7 0 P07900;P07900-2;Q58FG1 P07900 HSP90AA1;HSP90AA4P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4 0 0 ; ; 172.03 0.00044652 139567000 299420 354870 300470 361380 452260 364930 501400 535480 327740 479010 FALSE FALSE TRUE 366024.946 396368.9595 411626.3566 381121.2743 407231.4064 384037.1705 394271.7939 404152.6904 393514.4118 359601.6225 1.017862332 1.102244636 1.144673246 1.059843033 1.132451527 1.067951718 1.096412722 1.123890064 1.094306552 1 18.45604 -8.088307852 21.23900521 1 1.095555031 0.380225062 0.035631105 22962.44963 5522710.969 0.03314139 0.00855707 8.16E-09 8.088307852 0.095555031 TLVSVTK ddPTM_HeLa_A486_30min_R1 2 TLVSVTK 7 0 P07900;P07900-2;Q58FG1 P07900 HSP90AA1;HSP90AA4P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A4 0 0 ; ; 147.34 0.0032767 69332000 246740 249740 175504 91520 271590 249960 289120 287310 210590 291150 FALSE FALSE TRUE 229444.8002 229949.6929 243463.849 213063.1852 237524.6497 219122.4766 216779.118 221895.7849 228844.1108 218244.1449 1.051321676 1.053635106 1.1155573 0.976260716 1.088343744 1.004024537 0.993287211 1.016731904 1.048569302 1 17.73558342 -5.26152866 25 1.020168319 1.071517733 0.358137484 0.033839803 9.520747554 2666203.954 0.009232675 0.014758667 5.48E-06 5.26152866 0.051349414 TLVTQNSGVEALIHAILR ddPTM_HeLa_A485_30min_R1 2 TLVTQNSGVEALIHAILR 18 0 P14923 P14923 JUP Junction plakoglobin 0 0 ; ; 261.31 4.16E-47 31232000 25507 33711 29568 24872 36256 32550 41278 41728 28934 43107 FALSE FALSE TRUE 31180.94415 37653.2082 40506.43363 26230.69438 32646.22534 34254.26767 32458.61809 31494.14257 34740.7884 32361.21823 0.963528132 1.163528763 1.25169681 0.810559547 1.008807058 1.058497472 1.003009771 0.973206335 1.073531539 1 14.9819783 -5.244996678 24.99942403 0.992764812 1.129978966 0.306303113 0.094067387 1032.669759 1570065.495 0.025605888 0.044191979 5.69E-06 5.244996678 0.137214155 TLVTQNSGVEALIHAILR ddPTM_HeLa_A486_30min_R1 2 TLVTQNSGVEALIHAILR 18 0 P14923 P14923 JUP Junction plakoglobin 0 0 ; ; 258.9 5.84E-47 50053000 31711 31202 28449 11033.6 40702 27892 37682 35147 34696 38107 FALSE FALSE TRUE 29488.22266 28729.43988 39465.21469 25686.77841 35596.77563 24450.96863 28253.56504 27144.79535 37703.47722 28564.75917 1.032328769 1.005765171 1.381605021 0.899247155 1.246178041 0.855983713 0.989105663 0.950289663 1.319929813 1 14.80194875 -6.251448774 24.95310484 1.017832612 1.110110531 0.06755837 0.16636948 2097.452317 5238723.494 0.053751737 0.053148559 5.60E-07 6.251448774 0.092277919 TLYRQS(ph)LPPLAK ddPTM_HeLa_A486_30min_R1 2 TLYRQSLPPLAK 12 1 F5H8C5;F5H0S5;F5H7J1;Q8NHQ8-2;Q8NHQ8;F5GYP8 F5H8C5 RASSF8 Ras association domain-containing protein 8 1 0 T(0.028)LY(0.001)RQS(0.971)LPPLAK;TLYRQS(1)LPPLAK ; 99.566 0.00054795 405110000 510520 537380 387140 258690 670200 638910 757630 783620 496560 660330 TRUE FALSE FALSE 474735.1843 494796.0517 537050.976 602243.3935 586137.2666 560087.7802 568062.9606 605206.8323 539602.2206 494979.07 0.959101532 0.99963025 1.084997343 1.216704766 1.18416576 1.13153831 1.147650467 1.222691764 1.090151591 1 18.917008 -4.846010175 2.793170979 1.152748826 0.970527793 0.512619263 0.062104521 0.182156597 2.824031671 0.015990901 0.043478375 1.43E-05 4.846010175 -0.182221034 TLYSFFS(ph)PSPAR ddPTM_HeLa_A485_30min_R1 2 TLYSFFSPSPAR 12 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 TLYSFFS(1)PSPAR;TLYSFFS(0.999)PS(0.001)PAR ; 223.36 4.43E-23 964690000 471200 652860 638420 479480 794470 655580 813880 859190 534930 724740 TRUE FALSE FALSE 576016.8144 729206.2979 874598.1249 505672.7783 715369.7772 689905.1551 639987.8892 648472.3053 642285.5443 544075.6559 1.0587072 1.340266358 1.607493582 0.929416291 1.314835114 1.268031656 1.176284736 1.19187892 1.180507779 1 19.05344775 -8.727131383 0.339938091 0.95431652 1.281941233 0.159220858 0.168396248 6.805109649 1.35927782 0.657057671 0.169304603 1.87E-09 8.727131383 0.327624713 TLYSFFS(ph)PSPAR ddPTM_HeLa_A486_30min_R1 2 TLYSFFSPSPAR 12 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 TLYS(0.001)FFS(0.999)PSPAR;TLYSFFS(0.999)PS(0.001)PAR ; 231.74 9.22E-24 1122570000 777660 850080 754380 312980 983930 718770 887130 868600 766010 921390 TRUE FALSE FALSE 723150.0498 782716.5649 1046496.139 728633.2571 860516.3246 630095.4653 665160.6909 670838.7414 832408.3636 690667.9468 1.047029985 1.133274779 1.515194304 1.054968977 1.24591901 0.912298693 0.963068713 0.971289814 1.205222231 1 19.39763275 -6.252023957 24.88464502 1.005624804 1.205144408 0.30557554 0.142155564 796.1208366 2104122.21 0.047765328 0.047139941 5.60E-07 6.252023957 0.199519604 TLYSFFSPS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 TLYSFFSPSPAR 12 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 TLYSFFSPS(1)PAR;TLYSFFS(0.005)PS(0.995)PAR ; 169.17 1.66E-10 2094150000 786030 1069970 927000 721550 1165400 905750 1053400 1103680 781090 938590 TRUE FALSE FALSE 960879.6617 1195093.684 1269935.876 760966.4494 1049368.684 953173.6694 828332.4845 833000.7495 937847.5984 704616.7865 1.36369113 1.696090282 1.802307155 1.07997207 1.489275737 1.3527547 1.175578698 1.182203952 1.331003769 1 19.42647932 -6.144501141 0.317624435 1.032322025 1.710211407 0.423098497 0.185774572 2.281345061 0.454806056 0.243990452 0.558835067 7.17E-07 6.144501141 0.677889382 TLYSFFSPS(ph)PAR ddPTM_HeLa_A486_30min_R1 1 TLYSFFSPSPAR 12 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 TLYSFFS(0.006)PS(0.994)PAR 134.61 1.80E-05 712940000 292970 308790 224370 89112 324810 271760 301150 302620 225780 326680 TRUE FALSE FALSE 272434.3159 284320.3558 311252.0728 207457.2395 284069.3011 238233.0143 225799.0848 233720.0321 245350.7922 244877.2017 1.112534422 1.161073199 1.271053698 0.847188869 1.160047972 0.972867268 0.922091086 0.954437696 1.001933992 1 17.90169894 -5.253541673 24.99929696 0.98271436 1.179505715 0.555804498 0.082619758 455.2503303 1441040.449 0.022260331 0.0377019 5.58E-06 5.253541673 0.196791355 TMAVLQIEAEK ddPTM_HeLa_A485_30min_R1 2 TMAVLQIEAEK 11 0 E7EWP0;H0Y886;O43674-2;O43674 E7EWP0 NDUFB5 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial" 0 0 ; ; 101.46 0.0031228 296120000 458600 575950 481890 178811 1334940 150239 824230 453270 409780 1309660 FALSE FALSE TRUE 560613.9878 643302.3424 660161.1641 188578.9922 1202028.686 158105.2817 648126.5272 342104.8218 492019.0873 983185.8645 0.570201432 0.654303897 0.671451033 0.191804011 1.222585403 0.160809149 0.659210583 0.347955391 0.500433443 1 19.90710465 -10.36738314 4.302029511 1.000846366 0.554246544 0.180933667 0.28518532 0.002160231 0.000317663 0.257663219 0.062378551 4.29E-11 10.36738314 -0.446599822 TMAVLQIEAEK ddPTM_HeLa_A486_30min_R1 2 TMAVLQIEAEK 11 0 E7EWP0;H0Y886;O43674-2;O43674 E7EWP0 NDUFB5 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial" 0 0 ; ; 108.57 0.0023386 235190000 897810 466330 270650 35017 458000 389910 557170 662700 541900 513500 FALSE FALSE TRUE 834878.1553 429376.3125 375452.9283 81521.34566 400553.3693 341806.8685 417760.1729 511817.6766 588872.3283 384916.2577 2.168986471 1.115505786 0.975414576 0.211789822 1.040624711 0.8880032 1.08532743 1.329685786 1.529871281 1 18.55418508 -7.195493121 4.392799574 1.323319903 1.022873366 0.037042503 0.46357891 0.662213033 25.30807804 0.245072078 0.133322192 6.38E-08 7.195493121 -0.300446536 TMCPLLSMKPGEYSYFS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TMCPLLSMKPGEYSYFSPR 19 1 E9PHA2;Q15003;C9J470;Q15003-2 E9PHA2 NCAPH Condensin complex subunit 2 1 0 TMCPLLSMKPGEYSYFS(1)PR;TMCPLLSMKPGEYSYFS(1)PR ; 182.48 2.12E-18 2195470000 944370 985530 827740 1079730 1374690 993830 1420630 1586160 933900 1392790 TRUE FALSE FALSE 1154441.848 1100779.161 1133955.471 1138712.916 1237821.037 1045865.402 1117100.795 1197151.773 1121325.164 1045593.085 1.104102413 1.052779686 1.084509344 1.08905934 1.183845852 1.000260442 1.068389616 1.144949971 1.072429781 1 19.99589007 -9.360035254 9.95745176 0.999999997 1.088963929 0.242259107 0.047180855 0 0 0.045309592 0.01098919 4.36E-10 9.360035254 0.088963932 TMCPLLSMKPGEYSYFS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TMCPLLSMKPGEYSYFSPR 19 1 E9PHA2;Q15003;C9J470;Q15003-2 E9PHA2 NCAPH Condensin complex subunit 2 1 0 TMCPLLSMKPGEYSYFS(1)PR;TMCPLLSMKPGEYSYFS(1)PR ; 187.17 1.43E-18 2441800000 1446230 1332780 948680 483790 1428290 1456210 1607620 1565690 1120520 1630060 TRUE FALSE FALSE 1344856.745 1227165.659 1316034.303 1126287.569 1249140.55 1276557.616 1205376.472 1209216.566 1217647.576 1221882.366 1.100643387 1.004323896 1.077054829 0.921764321 1.022308354 1.044746738 0.986491422 0.98963419 0.996534208 1 20.22067397 -1.000013991 0.891487017 1.000075356 46.77804284 0.367446107 0.038100223 972.0904619 2.223720348 0.012585661 90489.66886 0.099996778 1.000013991 45.77796748 TMELS(ph)PR ddPTM_HeLa_A485_30min_R1 4 TMELSPR 7 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 TMELS(1)PR;TMELS(1)PR;TMELS(1)PR;TMELS(1)PR ;;; 107.56 0.0032527 1322300000 1543960 1899350 1711800 1668430 2211100 1891180 2292940 2556170 1616120 2256680 TRUE FALSE FALSE 1887408.575 2121462.46 2345066.054 1759572.106 1990955.12 1990199.26 1803034.637 1929265.3 1940460.46 1694131.207 1.114086422 1.252242124 1.384229299 1.038627999 1.175207158 1.174760994 1.06428276 1.138793319 1.14540152 1 20.69211418 -7.693739049 0.175707828 0.933916441 1.289394735 0.298354542 0.087947593 4.929872351 0.828882527 0.738904818 0.619211425 2.02E-08 7.693739049 0.355478294 TMELS(ph)PR ddPTM_HeLa_A486_30min_R1 4 TMELSPR 7 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 TMELS(1)PR;TMELS(1)PR;TMELS(1)PR;TMELS(1)PR ;;; 100.76 0.0036163 865490000 2287060 2519380 1985750 832630 2738640 2334670 2680610 2637950 2204500 2806800 TRUE FALSE FALSE 2126748.904 2319735.153 2754685.58 1938404.719 2395134.234 2046642.153 2009893.025 2037346.371 2395587.835 2103959.011 1.010831909 1.102557199 1.309286714 0.921312967 1.138393962 0.972757617 0.955290961 0.968339383 1.138609556 1 21.00467517 -5.288280253 24.99911752 1.013287312 1.137058574 0.266144203 0.096853396 993.5452738 925368.4886 0.027176817 0.040323281 5.15E-06 5.288280253 0.123771262 TMFAQVES(ph)DDEEAK ddPTM_HeLa_A485_30min_R1 5 TMFAQVESDDEEAK 14 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK ;;;; 331.4 3.12E-81 1672220000 1580010 1764840 702748 1566980 828277 1346021 1630500 1615190 697711 1747250 TRUE FALSE FALSE 1931477.774 1971222.686 962723.729 1652580.15 745810.8336 1416496.578 1282130.355 1219062.12 837735.1979 1311692.731 1.472507797 1.502808272 0.733955222 1.259883592 0.568586542 1.079899694 0.977462423 0.929380861 0.638667257 1 20.32299837 -4.751797884 24.99811483 0.906382853 1.487658397 0.590144908 0.196312186 128.0336708 331954.2697 0.0472131 0.121538605 1.77E-05 4.751797884 0.581275545 TMFAQVES(ph)DDEEAK ddPTM_HeLa_A486_30min_R1 6 TMFAQVESDDEEAK 14 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK;T(0.288)MFAQVES(0.712)DDEEAK ;;;;; 400.08 1.06E-126 1484820000 2431764 1768878 557413 736524 818318 1532086 1821723 1472024 1217960 3869328 TRUE FALSE FALSE 2261309.901 1628705.665 773258.2416 1714665.094 715676.9259 1343072.806 1365908.637 1136876.269 1323533.753 2900423.084 0.779648291 0.561540719 0.266601878 0.591177578 0.246749148 0.463060998 0.470934273 0.391969115 0.456324376 1 21.46783193 -9.89818593 5.279677641 1.000000651 0.461060378 0.537455899 0.147365526 387868386.2 283279892.6 4296.642557 0.036490642 1.26E-10 9.89818593 -0.538940273 TMFAQVES(ph)DDEEAKNEPEWK ddPTM_HeLa_A485_30min_R1 7 TMFAQVESDDEEAKNEPEWK 20 1 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAKNEPEWK;T(0.036)MFAQVES(0.964)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK ;;;;;; 270.18 3.47E-60 5975882000 2525587 1544758 1134866 5911140 3001368 2229679 5026280 4323400 1819086 7720250 TRUE FALSE FALSE 3087395.115 1725404.01 1554700.159 6234050.61 2702541.263 2346421.545 3952374.217 3263079.371 2184159.875 5795733.756 0.532701336 0.297702428 0.268249065 1.0756275 0.46629838 0.404853232 0.681945442 0.563014022 0.376856489 1 22.46655989 -11.14993235 2.443008324 2.110351051 0.522336286 0.299960675 0.220566531 9373579.233 2222052.119 57782961.74 0.056845083 7.08E-12 11.14993235 -1.588014765 TMFAQVES(ph)DDEEAKNEPEWK ddPTM_HeLa_A486_30min_R1 4 TMFAQVESDDEEAKNEPEWK 20 1 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAKNEPEWK;T(0.016)MFAQVES(0.984)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK ;;; 246.21 9.08E-47 5883060000 2703290 2323490 866088 2555990 1994380 3331710 5097760 4498990 1820850 6024760 TRUE FALSE FALSE 2513803.331 2139368.19 1201460.468 5950473.893 1744226.264 2920677.495 3822246.529 3474668.189 1978682.744 4516120.881 0.556628885 0.473718097 0.266038155 1.317607311 0.386222227 0.646722612 0.846356116 0.769392202 0.438137684 1 22.10665267 -14 0.049984132 2.256831703 3.73E-14 0.130630996 0.282606612 1217.76519 4.491408535 210.2855649 46.95398569 1.00E-14 14 -2.256831703 TMFAQVES(ph)DDEEAKNEPEWKK ddPTM_HeLa_A485_30min_R1 2 TMFAQVESDDEEAKNEPEWKK 21 2 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAKNEPEWKK;TMFAQVES(1)DDEEAKNEPEWKK ; 233.43 2.66E-37 843220000 337120 222193 109153 719680 388970 395360 926670 873900 272451 1045630 TRUE FALSE FALSE 412111.1809 248176.5385 149533.2369 758994.2961 350242.781 416060.4383 728679.3843 659574.6548 327129.4166 784973.6844 0.524999996 0.316159055 0.190494586 0.966904128 0.446184105 0.530031065 0.928285112 0.840250658 0.416739342 1 19.58228476 -5.268937812 0.182265306 1.018985007 2.39E-17 0.305338752 0.231812742 14.20056548 0.711948821 0.795101539 3.550500483 5.38E-06 5.268937812 -1.018985007 TMFAQVES(ph)DDEEAKNEPEWKK ddPTM_HeLa_A486_30min_R1 2 TMFAQVESDDEEAKNEPEWKK 21 2 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAKNEPEWKK;TMFAQVES(1)DDEEAKNEPEWKK ; 227.51 3.29E-36 632200000 268750 190556 77945 270300 206174 321370 538950 485020 178785 776180 TRUE FALSE FALSE 249912.0128 175455.6486 108127.3914 629272.0602 180313.7344 281722.6369 404099.0096 374591.5339 194282.2278 581819.4759 0.429535317 0.301563725 0.185843541 1.081558948 0.309913542 0.484209705 0.694543628 0.643827767 0.333921836 1 19.15021206 -14 0.132911874 2.567550936 0.315806115 0.273554818 0.245865208 199.2940017 1.654959536 84.26151748 1.771320146 1.00E-14 14 -2.251744821 TMIIS(ph)PER ddPTM_HeLa_A485_30min_R1 4 TMIISPER 8 0 O75533;B4DGZ4;A0A494C1M2;O75533-2 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER ;;; 139.54 0.00043357 2282050000 2318420 2716150 2488220 2463960 2382870 2009740 2392630 1995670 2104700 2769220 TRUE FALSE FALSE 2834144.531 3033780.115 3408716.121 2598559.896 2145623.096 2114966.879 1881425.055 1506228.803 2527093.985 2078904.418 1.36328756 1.459316787 1.639669478 1.249966027 1.032093192 1.017346859 0.905007964 0.724530089 1.215589309 1 20.987392 -5.632983937 2.522383708 0.958552492 1.48447393 0.745738198 0.13237179 0.134674277 1.739054699 0.042070454 0.057853034 2.33E-06 5.632983937 0.525921438 TMIIS(ph)PER ddPTM_HeLa_A486_30min_R1 4 TMIISPER 8 0 O75533;B4DGZ4;A0A494C1M2;O75533-2 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER;TMIIS(1)PER ;;; 160.33 4.24E-05 2006710000 2312780 2410010 1592360 540244 1672070 1888410 1914260 1876850 2023890 2198100 TRUE FALSE FALSE 2150666.065 2219032.03 2208964.437 1257715.334 1462343.389 1655437.174 1435291.901 1449532.226 2199322.415 1647681.453 1.305268116 1.346760338 1.34065018 0.763324326 0.88751584 1.004707051 0.871097929 0.879740574 1.334798308 1 20.65200592 -5.243017192 24.5007673 0.952775566 1.332479706 0.581445511 0.14284101 438.0690997 582612.8748 0.038647839 0.066771928 5.71E-06 5.243017192 0.37970414 TMIIS(ph)PERLDPFADGGK ddPTM_HeLa_A485_30min_R1 4 TMIISPERLDPFADGGK 17 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 T(0.004)MIIS(0.996)PERLDPFADGGK;T(0.016)MIIS(0.984)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK ;;; 160.77 4.15E-12 534637000 424230 361921 349571 683847 539357 371095 532565 437247 440313 930780 TRUE FALSE FALSE 518598.4999 404244.5127 478891.8598 721203.83 485656.7233 390524.9604 418778.1371 330011.4877 528679.7803 698753.6757 0.742176418 0.578522198 0.685351471 1.032128853 0.695032799 0.55888788 0.599321552 0.47228587 0.756603935 1 19.41442444 -8.018646489 24.3147759 1.000000012 0.670914238 0.328300288 0.142130001 1167.469801 1522365.558 0.148286357 0.038287373 9.58E-09 8.018646489 -0.329085773 TMIIS(ph)PERLDPFADGGK ddPTM_HeLa_A486_30min_R1 5 TMIISPERLDPFADGGK 17 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 TMIIS(1)PERLDPFADGGK;T(0.019)MIIS(0.981)PERLDPFADGGK;T(0.164)MIIS(0.836)PERLDPFADGGK;TMIIS(1)PERLDPFADGGK;T(0.028)MIIS(0.972)PERLDPFADGGK ;;;; 205.43 1.61E-25 755473000 1012658 1028927 602341 445913 893730 1163915 1172570 1210307 903216 1259996 TRUE FALSE FALSE 941675.9036 947391.0772 835583.5665 1038107.999 781630.0497 1020323.001 879180.5838 934746.5169 981507.4901 944484.8004 0.997026001 1.003077103 0.884697738 1.09912621 0.827572926 1.08029584 0.930857313 0.989689317 1.03919882 1 19.84916805 -7.554604199 8.954499518 1.018123772 0.974410185 0.049712265 0.07770357 0.960914743 245.5953466 0.047797335 0.018121002 2.79E-08 7.554604199 -0.043713588 TMIIS(ph)PERLDPFADGGKT(ph)PDPK ddPTM_HeLa_A485_30min_R1 8 TMIISPERLDPFADGGKTPDPK 22 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 T(0.12)MIIS(0.88)PERLDPFADGGKT(1)PDPK;T(0.44)MIIS(0.56)PERLDPFADGGKT(1)PDPK;T(0.067)MIIS(0.933)PERLDPFADGGKT(1)PDPK;T(0.462)MIIS(0.538)PERLDPFADGGKT(1)PDPK;T(0.421)MIIS(0.579)PERLDPFADGGKT(1)PDPK;T(0.413)MIIS(0.587)PERLDPFADGGKT(1)PDPK;T(0.395)MIIS(0.605)PERLDPFADGGKT(1)PDPK;T(0.403)MIIS(0.597)PERLDPFADGGKT(1)PDPK ;;;;;;; 113.65 0.00020996 2223423000 847892 575827 391463 1773843 963482 895903 1876903 1670663 595729 2304566 TRUE FALSE FALSE 1036502.65 643164.9586 536281.4538 1870743.551 867554.3491 942811.0958 1475887.341 1260930.28 715286.3459 1730080.109 0.599106738 0.371754438 0.309974926 1.081304584 0.501453282 0.544952278 0.853074568 0.728827685 0.413441171 1 20.72240741 -14 0.067225233 2.193268388 0.145444595 0.215725355 0.22399407 538.8133741 2.613506724 104.5411642 14.08787899 1.00E-14 14 -2.047823793 TMIIS(ph)PERLDPFADGGKT(ph)PDPK ddPTM_HeLa_A486_30min_R1 8 TMIISPERLDPFADGGKTPDPK 22 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 T(0.423)MIIS(0.577)PERLDPFADGGKT(1)PDPK;T(0.101)MIIS(0.899)PERLDPFADGGKT(1)PDPK;T(0.17)MIIS(0.831)PERLDPFADGGKT(1)PDPK;T(0.023)MIIS(0.977)PERLDPFADGGKT(1)PDPK;T(0.006)MIIS(0.994)PERLDPFADGGKT(1)PDPK;T(0.422)MIIS(0.578)PERLDPFADGGKT(1)PDPK;T(0.405)MIIS(0.595)PERLDPFADGGKT(1)PDPK;T(0.47)MIIS(0.53)PERLDPFADGGKT(1)PDPK ;;;;;;; 143.79 1.08E-08 3069759000 1035768 831224 350995 972821 739928 1252625 1960935 1742521 714359 2303422 TRUE FALSE FALSE 963166.0119 765354.783 486909.664 2264776.452 647119.3307 1098088.863 1470288.322 1345787.007 776280.2133 1726630.138 0.557829955 0.443265043 0.28199998 1.311674343 0.374787464 0.635972255 0.851536348 0.779429814 0.449592646 1 20.71952765 -13.9999942 0.051784316 2.300589119 2.89E-14 0.139986788 0.280822813 1089.806146 4.155767808 196.3057575 41.56642408 1.00E-14 13.9999942 -2.300589119 TMIIS(ph)PERLDPFADGGKTPDPK ddPTM_HeLa_A485_30min_R1 3 TMIISPERLDPFADGGKTPDPK 22 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 T(0.004)MIIS(0.996)PERLDPFADGGKTPDPK;T(0.028)MIIS(0.972)PERLDPFADGGKTPDPK;T(0.029)MIIS(0.971)PERLDPFADGGKTPDPK ;; 137.32 3.01E-07 1314870000 1914083 1725150 1019680 2939999 2374389 2711331 3993900 4739560 1888278 4483400 TRUE FALSE FALSE 2339864.16 1926891.286 1396902.064 3100603.701 2137986.494 2853292.099 3140570.638 3577175.479 2267238.074 3365770.891 0.695194128 0.572496271 0.415031834 0.921216506 0.635214506 0.847738064 0.933091033 1.062810154 0.673616282 1 21.68250554 -5.908522288 0.977780206 0.922910635 0.579014232 0.438560483 0.148331737 0.50062726 1.036660728 0.0728216 0.096358438 1.23E-06 5.908522288 -0.343896403 TMIIS(ph)PERLDPFADGGKTPDPK ddPTM_HeLa_A486_30min_R1 3 TMIISPERLDPFADGGKTPDPK 22 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 T(0.032)MIIS(0.959)PERLDPFADGGKT(0.009)PDPK;T(0.216)MIIS(0.782)PERLDPFADGGKT(0.002)PDPK;T(0.02)MIIS(0.98)PERLDPFADGGKTPDPK ;; 99.711 0.00029836 344276000 241709 176061 74905 120893 181338 197508 285010 280066 133570 329859 TRUE FALSE FALSE 224766.4473 162109.2852 103910.222 281445.0136 158592.8971 173141.4711 213697.4835 216301.0856 145147.9551 247260.1594 0.909028158 0.655622344 0.420246522 1.138254599 0.641400934 0.700240069 0.864261691 0.8747915 0.587025243 1 17.91567027 -10.86864496 2.400470319 1.118559415 0.754924435 0.129978323 0.190512743 32583975.18 17886460.02 21995449.58 0.047169235 1.35E-11 10.86864496 -0.36363498 TMLLLSRS(ph)PEAQPK ddPTM_HeLa_A485_30min_R1 1 TMLLLSRSPEAQPK 14 1 P55265-5;P55265;P55265-4 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 TMLLLS(0.006)RS(0.994)PEAQPK 119.68 4.61E-05 183860000 101870 123190 76816 168480 265790 226200 421230 753870 106790 256340 TRUE FALSE FALSE 124530.6301 137595.9989 105233.435 177683.6358 239327.0144 238043.4822 331230.7694 568982.2005 128221.7735 192439.1556 0.647116901 0.715010407 0.546840037 0.923323714 1.243650304 1.236980497 1.721223357 2.956686225 0.666297735 1 17.55404285 -6.017925689 1.288837313 1.704981268 0.64570578 0.303643538 0.573187226 0.469537359 1.618101839 0.246562398 0.275227548 9.60E-07 6.017925689 -1.059275488 TMLLLSRS(ph)PEAQPK ddPTM_HeLa_A486_30min_R1 1 TMLLLSRSPEAQPK 14 1 P55265-5;P55265;P55265-4 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 T(0.026)MLLLS(0.156)RS(0.818)PEAQPK 81.317 0.0020533 172880000 188410 116100 117990 122250 340750 161150 287810 335830 118990 225120 TRUE FALSE FALSE 175203.432 106899.8132 163678.8879 284604.1782 298009.9576 141268.9515 215796.8939 259368.8401 129304.149 168748.4867 1.03825187 0.633486055 0.969957663 1.686558402 1.766000771 0.837156849 1.278807876 1.537014317 0.76625368 1 17.36451504 -5.014859628 24.14680586 1.295802786 0.827332098 0.226774065 0.330543341 556.9872029 905107.3087 0.089451464 0.162543201 9.66E-06 5.014859628 -0.468470688 TMPLRWS(ph)FGSK ddPTM_HeLa_A485_30min_R1 2 TMPLRWSFGSK 11 1 V9GZ20;V9GXZ5;Q70EL4-2;Q70EL4-3;Q70EL4-4;Q70EL4 V9GZ20 USP43 Ubiquitin carboxyl-terminal hydrolase 43 1 0 TMPLRWS(1)FGSK;T(0.001)MPLRWS(0.993)FGS(0.005)K ; 76.262 0.0046444 172209000 165523 180938 134716 156774 234529 180704 262030 299470 166255 252023 TRUE FALSE FALSE 202343.0203 202097.1251 184553.0544 165338.1666 211178.4693 190165.382 206045.1499 226024.5129 199620.8535 189198.3042 1.069475866 1.068176197 0.975447719 0.873888206 1.116175275 1.005111451 1.089043323 1.19464344 1.055087964 1 17.52953963 -6.816297685 5.686613148 1.102310558 1.016272171 0.138862689 0.076730028 0.325272031 21.98388296 0.032997754 0.022352896 1.53E-07 6.816297685 -0.086038387 TMS(ph)QGEITK ddPTM_HeLa_A485_30min_R1 1 TMSQGEITK 9 0 H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4;H3BV44 H3BRD5 MYO9A Unconventional myosin-IXa 1 0 T(0.001)MS(0.999)QGEITK 82.505 0.0065258 303360000 181560 206960 171110 235720 255210 258980 294670 364640 239270 351810 TRUE FALSE FALSE 221947.3956 231162.1717 234410.7095 248596.7867 229800.3963 272539.7923 231711.3473 275211.4683 287289.2943 264110.2416 0.840358913 0.875248799 0.88754873 0.941261442 0.870092712 1.031916789 0.877328141 1.042032549 1.087762794 1 18.01078072 -6.467379736 0.587798139 1.046078522 0.859721273 0.574501825 0.054456489 0.617130266 0.453514277 0.046539379 0.044206456 3.41E-07 6.467379736 -0.186357248 TMSEGTLAKCGTGMS(ph)S(ph)AKGEITSEVK ddPTM_HeLa_A485_30min_R1 1 TMSEGTLAKCGTGMSSAKGEITSEVK 26 2 Q5HYM0-2;Q5HYM0 Q5HYM0-2 ZC3H12B Probable ribonuclease ZC3H12B 2 0 T(0.051)MS(0.054)EGT(0.131)LAKCGT(0.337)GMS(0.378)S(0.38)AKGEIT(0.342)S(0.327)EVK 47.104 0.022626 220940000 143240 182610 95086 80067 96496 167370 161030 199020 114140 102640 TRUE FALSE FALSE 175103.2438 203964.651 130262.2683 84440.85747 86888.51942 176133.2344 126624.625 150210.0329 137046.851 77053.73695 2.272482176 2.647044246 1.690537973 1.095869724 1.127635373 2.285849348 1.643328799 1.949419183 1.778587989 1 16.23357731 -4.810949423 6.875510091 1.597117657 2.458393156 0.450295753 0.392184486 0.173483558 18.64080964 0.106930202 0.229363546 1.55E-05 4.810949423 0.861275499 TNADVMTALS(ph)QGY(ph)RMPR ddPTM_HeLa_A486_30min_R1 1 TNADVMTALSQGYRMPR 17 1 P07948-2;P07948 P07948-2 LYN Tyrosine-protein kinase Lyn 2 0 TNADVMT(0.259)ALS(0.784)QGY(0.957)RMPR 44.238 0.020991 402090000 233510 423790 296480 97748 494560 546850 667630 602500 396900 430560 TRUE FALSE FALSE 217142.1548 390207.337 411284.996 227562.2839 432527.6732 479385.207 500581.9125 465323.9025 431303.6116 322744.9735 0.672797945 1.209026845 1.274334319 0.705083898 1.340153089 1.485337484 1.551013815 1.441769634 1.33636043 1 18.3000351 -5.921030326 9.224510061 1.403413405 1.005366855 0.411518865 0.226241297 0.303480356 32.54140315 0.068749907 0.078011755 1.20E-06 5.921030326 -0.39804655 TNAVS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TNAVSPK 7 0 Q6XZF7 Q6XZF7 DNMBP Dynamin-binding protein 1 0 TNAVS(1)PK;TNAVS(1)PK ; 86.879 0.0075291 574360000 1291570 608590 548620 785490 573190 1937450 1180730 1010280 1240610 2713300 TRUE FALSE FALSE 1201037.613 560363.112 761060.3566 1828660.416 501295.1654 1698427.118 885298.8655 780261.2983 1348147.074 2033872.019 0.590517791 0.275515424 0.374192845 0.899102991 0.246473308 0.835070792 0.435277568 0.38363343 0.662847544 1 20.95579747 -14 0.276383065 4.45993904 0.484153977 0.322420337 0.21068936 262.4451743 2.531846824 519.6620012 0.241904292 1.00E-14 14 -3.975785063 TNEKVELQELNDR ddPTM_HeLa_A485_30min_R1 1 TNEKVELQELNDR 13 1 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 VIM;DES Vimentin;Desmin 0 0 70.197 0.032628 12416000 9291.5 10494 9882.4 11146 27318 12755 23140 32090 17941 27385 FALSE FALSE TRUE 11358.36212 11721.18201 13538.311 11754.87776 24598.124 13422.83208 18195.94996 24219.87718 21541.59414 20558.42348 0.552491884 0.570140119 0.658528657 0.571779143 1.196498555 0.652911547 0.885084889 1.178099926 1.047823251 1 14.32744202 -5.668336878 0.549782397 1.066702565 0.468160126 0.552600787 0.164772068 0.913268808 0.539151678 0.12557636 0.292257225 2.15E-06 5.668336878 -0.598542438 TNGHS(ph)PSQPR ddPTM_HeLa_A485_30min_R1 7 TNGHSPSQPR 10 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 TNGHS(0.986)PS(0.014)QPR;TNGHS(0.974)PS(0.026)QPR;TNGHS(0.946)PS(0.054)QPR;TNGHS(0.999)PSQPR;TNGHS(0.975)PS(0.025)QPR;TNGHS(0.99)PS(0.01)QPR;TNGHS(0.991)PS(0.008)QPR ;;;;;; 172.92 1.87E-07 5487900000 1217434 1564539 932297 1464580 1185828 1246899 1638861 2055970 1308632 1981374 TRUE FALSE FALSE 1488247.993 1747498.226 1277192.456 1544586.297 1067762.801 1312184.704 1288704.959 1551740.134 1571262.439 1487453.926 1.000533843 1.174825113 0.858643373 1.038409506 0.717845966 0.882168301 0.86638311 1.043218957 1.056343602 1 20.50441355 -4.765651166 24.99999973 0.926323723 1.087679482 0.244624666 0.108321762 132.7201572 787809.3559 0.028947415 0.063883121 1.72E-05 4.765651166 0.161355759 TNGHS(ph)PSQPR ddPTM_HeLa_A486_30min_R1 5 TNGHSPSQPR 10 0 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5;C9JVY5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 TNGHS(0.995)PS(0.005)QPR;TNGHS(0.997)PS(0.003)QPR;TNGHS(0.993)PS(0.006)QPR;TNGHS(0.998)PS(0.002)QPR;TNGHS(1)PSQPR ;;;; 142.38 4.62E-06 3283853000 1803784 760153 1190579 419228 959776 1989053 1584142 1231847 1775194 1885301 TRUE FALSE FALSE 1677348.056 699915.7079 1651603.074 975983.9706 839391.9445 1743663.864 1187772.916 951382.3291 1929069.245 1413209.358 1.186906983 0.495266822 1.168689596 0.690615276 0.593961496 1.233832662 0.840479091 0.673206927 1.365027222 1 20.43054378 -6.257954604 24.96576746 0.990707726 0.820049582 0.107045661 0.274257859 817.4271092 5856253.96 0.08922483 0.085814058 5.52E-07 6.257954604 -0.170658144 TNGVSDVPTS(ph)PTLQRPTHMNQMVFHK ddPTM_HeLa_A486_30min_R1 2 TNGVSDVPTSPTLQRPTHMNQMVFHK 26 1 A0A1B0GTR9;O60674 A0A1B0GTR9 JAK2 Tyrosine-protein kinase JAK2 1 0 TNGVSDVPT(0.211)S(0.706)PT(0.064)LQRPT(0.02)HMNQMVFHK;TNGVSDVPT(0.166)S(0.783)PT(0.048)LQRPT(0.002)HMNQMVFHK ; 114.63 0.00016455 279630000 289080 252923 153439 95742 278580 253607 322650 306950 227686 356470 TRUE FALSE FALSE 268816.9848 232880.4604 212854.69 222892.2145 243637.8987 222319.5468 241919.5574 237064.1857 247422.0058 267207.5918 1.006023006 0.871533847 0.796589231 0.834153749 0.911792577 0.832010593 0.905361842 0.887191057 0.925954252 1 18.02760147 -8.1418598 1.078053714 1.000000632 0.872697357 0.316770613 0.053963765 0.833361716 2.048242994 0.052644931 0.016918297 7.21E-09 8.1418598 -0.127303276 TNILQYASTRPPTLS(ph)PIPHIPR ddPTM_HeLa_A485_30min_R1 1 TNILQYASTRPPTLSPIPHIPR 22 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TNILQYASTRPPT(0.036)LS(0.964)PIPHIPR 228.41 1.71E-36 560990000 210940 353930 383920 198850 409640 285210 261080 326890 317830 250170 TRUE FALSE FALSE 257862.8753 395319.0347 525947.9842 209712.672 368854.8033 300143.1546 205298.1252 246719.715 381615.5657 187807.223 1.373018945 2.104919227 2.800467286 1.116637947 1.964007546 1.598144894 1.093132212 1.313685975 2.031953615 1 17.51889302 -5.283694746 24.96215342 1.471735733 2.094013782 0.293408323 0.459144189 997.4262554 1118734.956 0.129696559 0.192535511 5.20E-06 5.283694746 0.622278049 TNILQYASTRPPTLS(ph)PIPHIPR ddPTM_HeLa_A486_30min_R1 1 TNILQYASTRPPTLSPIPHIPR 22 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TNILQYASTRPPT(0.007)LS(0.992)PIPHIPR 232.02 5.96E-37 296080000 275780 375010 338630 102100 422760 302060 340810 322080 338880 285370 TRUE FALSE FALSE 256449.2461 345292.8418 469756.6048 237693.9598 369733.4987 264794.9083 255535.7333 248749.415 368254.3913 213911.4946 1.198856783 1.614185542 2.19603255 1.111178996 1.728441473 1.23787134 1.194586265 1.162861376 1.721526896 1 17.70665448 -6.27535467 24.24380677 1.269249049 1.58152684 0.180302354 0.326015184 963.573343 1678772.352 0.11354901 0.100686511 5.30E-07 6.27535467 0.312277792 TNKPS(ph)TPTTATR ddPTM_HeLa_A486_30min_R1 1 TNKPSTPTTATR 12 1 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0;A0A2R8YEA0 A0A2R8Y7K2 SPAST Spastin 1 0 T(0.008)NKPS(0.75)T(0.234)PT(0.005)T(0.002)AT(0.001)R 55.097 0.019888 372790000 330670 324990 167600 276620 308990 450000 502650 499900 272390 770610 TRUE FALSE FALSE 307491.7406 299236.6088 232499.2085 643985.3396 270233.593 394483.5753 376881.6535 386083.6827 296000.9845 577644.2402 0.532320275 0.518029244 0.402495502 1.114847678 0.467820112 0.682917872 0.652445965 0.668376236 0.51242783 1 19.13982171 -11.53799345 2.205047801 6.799680605 0.622411023 0.272188179 0.187760286 7743203.27 580601.1285 224291546.8 0.045951894 2.90E-12 11.53799345 -6.177269581 TNKPST(ph)PTTATR ddPTM_HeLa_A485_30min_R1 4 TNKPSTPTTATR 12 1 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0;A0A2R8YEA0 A0A2R8Y7K2 SPAST Spastin 1 0 T(0.004)NKPS(0.279)T(0.704)PT(0.012)T(0.001)ATR;T(0.001)NKPS(0.072)T(0.746)PT(0.137)T(0.044)ATR;T(0.006)NKPS(0.203)T(0.79)PTTATR;TNKPS(0.103)T(0.871)PT(0.024)T(0.001)ATR ;;; 113.47 0.00038885 1564260000 1925420 1657330 1221570 2852990 2369890 1975380 3082950 2822480 1604300 3821110 TRUE FALSE FALSE 2353723.036 1851140.327 1673479.577 3008841.62 2133935.43 2078807.842 2424252.547 2130262.355 1926268.294 2868577.599 0.820519214 0.645316455 0.58338306 1.048896715 0.743900193 0.72468245 0.845106142 0.742619741 0.671506427 1 21.45190411 -10.98267848 2.833281335 1.215076673 0.759167528 0.26145501 0.121792994 132559902.6 135977748 187171679.2 0.032272413 1.04E-11 10.98267848 -0.455909145 TNKPST(ph)PTTATR ddPTM_HeLa_A486_30min_R1 2 TNKPSTPTTATR 12 1 A0A2R8Y7K2;A0A2R8Y5N9;A0A2R8Y481;A0A2R8YFW8;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0-4;Q9UBP0-3;Q9UBP0-2;Q9UBP0;A0A2R8YEA0 A0A2R8Y7K2 SPAST Spastin 1 0 T(0.023)NKPS(0.243)T(0.703)PT(0.025)T(0.006)ATR;TNKPS(0.171)T(0.724)PT(0.104)T(0.001)ATR ; 93.909 0.002075 761790000 875000 758870 359781 454837 731280 948260 1056310 1049810 628950 1463290 TRUE FALSE FALSE 813667.0185 698734.3774 499097.8385 1058883.522 639556.0435 831273.3224 792010.0655 810791.1802 683467.8924 1096872.66 0.741806272 0.637024153 0.455018943 0.965365955 0.583072281 0.757857637 0.722061999 0.73918442 0.623105961 1 20.06496462 -11.30173626 2.141301693 2.363094895 0.692149354 0.347841139 0.126677622 6388337.27 829460.3441 42155764.51 0.030729546 4.99E-12 11.30173626 -1.67094554 TNKS(ph)PEAKPLPGK ddPTM_HeLa_A485_30min_R1 1 TNKSPEAKPLPGK 13 2 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 T(0.254)NKS(0.746)PEAKPLPGK 111.06 0.00021254 580290000 622410 225530 190810 1399200 593450 406510 818510 524450 400220 2278000 TRUE FALSE FALSE 760862.9572 251903.7716 261398.5593 1475634.753 534364.0343 427794.235 643628.6519 395827.8152 480540.483 1710136.523 0.444913577 0.147300387 0.152852451 0.86287541 0.31246864 0.250152096 0.376360976 0.231459775 0.280995392 1 20.70568007 -10.64814012 2.726834409 1.072601581 0.33857664 0.506530722 0.19544683 54681223.29 50086652.94 27876268.95 0.051559917 2.25E-11 10.64814012 -0.734024941 TNKS(ph)PEAKPLPGK ddPTM_HeLa_A486_30min_R1 1 TNKSPEAKPLPGK 13 2 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 T(0.003)NKS(0.997)PEAKPLPGK 111.22 0.00013251 553900000 699240 701350 194290 521020 446950 1043900 1422200 1131700 573410 1452300 TRUE FALSE FALSE 650226.8869 645772.4717 269524.2913 1212960.891 390889.3634 915114.2316 1066350.518 874036.6148 623113.6405 1088634.627 0.597286611 0.593194866 0.24758012 1.114203848 0.359063871 0.840607316 0.979530222 0.802874163 0.572380875 1 20.0540884 -5.663774295 0.89890662 0.822647945 0.517707958 0.185132713 0.243575448 1.112494127 1.904352444 0.115807179 0.212697885 2.17E-06 5.663774295 -0.304939987 TNKS(ph)PEAKPLPGKLPK ddPTM_HeLa_A485_30min_R1 1 TNKSPEAKPLPGKLPK 16 3 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 T(0.242)NKS(0.758)PEAKPLPGKLPK 81.016 0.0034993 5169600000 4812100 2558900 1289900 8363700 4848900 4805100 10297000 10219000 3282600 15080000 TRUE FALSE FALSE 5882535.043 2858141.096 1767087.687 8820587.753 4366126.49 5056687.606 8096961.831 7712774.227 3941387.71 11320833.53 0.519620311 0.252467373 0.156091659 0.779146494 0.385671822 0.446670962 0.715226649 0.681290314 0.348153491 1 23.43247685 -13.99999999 0.104828816 2.656471196 0.153552798 0.43074529 0.187552417 167.3736768 1.178816823 60.11683607 2.764291133 1.00E-14 13.99999999 -2.502918398 TNKS(ph)PEAKPLPGKLPK ddPTM_HeLa_A486_30min_R1 2 TNKSPEAKPLPGKLPK 16 3 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 T(0.108)NKS(0.892)PEAKPLPGKLPK;T(0.009)NKS(0.991)PEAKPLPGKLPK ; 132.14 7.65E-05 9982800000 6973700 4757700 1314890 4472900 3863100 7899900 11443800 10014900 3907800 14675300 TRUE FALSE FALSE 6484879.642 4380682.525 1824050.622 10413137.25 3378553.976 6925290.658 8580440.2 7734725.894 4246531.25 11000509.36 0.589507216 0.398225426 0.165815106 0.946605008 0.307127049 0.629542727 0.7800039 0.703124341 0.38603042 1 23.39106699 -13.99999999 0.113993047 2.415581439 0.311893025 0.278590405 0.222145291 210.7653889 1.579172443 69.71179982 2.478709481 1.00E-14 13.99999999 -2.103688414 TNLQPLESTQS(ph)QDF ddPTM_HeLa_A485_30min_R1 1 TNLQPLESTQSQDF 14 0 Q9Y248 Q9Y248 GINS2 DNA replication complex GINS protein PSF2 1 0 TNLQPLES(0.004)T(0.011)QS(0.985)QDF 103.5 0.00045105 44611000 83877 107070 103600 115770 154450 125990 151000 148840 91826 154790 TRUE FALSE FALSE 102535.1493 119590.9051 141925.9512 122094.222 139072.4157 132586.6416 118737.6164 112336.7566 110254.6359 116203.7017 0.882374208 1.029148843 1.22135482 1.050691331 1.196798498 1.140984664 1.021805801 0.966722703 0.948804851 1 16.8262965 -6.979815134 4.59415233 0.97167302 1.093582256 0.247460072 0.090162254 0.280232445 14.78980405 0.04286808 0.026989735 1.05E-07 6.979815134 0.121909236 TNLSGRQS(ph)PSFK ddPTM_HeLa_A485_30min_R1 3 TNLSGRQSPSFK 12 1 Q6IN85-2;Q6IN85;Q6IN85-4 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 0 TNLSGRQS(0.89)PS(0.109)FK;TNLSGRQS(0.99)PS(0.01)FK;TNLSGRQS(1)PSFK ;; 136.63 6.19E-06 1525860000 1722990 2398950 1531530 1795790 3129460 2802010 4677700 5960200 1694450 2756480 TRUE FALSE FALSE 2106263.181 2679486.334 2098106.679 1893889.461 2817879.974 2948718.911 3678271.182 4498451.605 2034510.573 2069340.265 1.017842844 1.294850528 1.013901249 0.915214135 1.361728673 1.424956041 1.777509114 2.173857862 0.983168697 1 20.98073946 -6.080024272 2.530022472 1.569848628 1.076701512 0.214635154 0.34446765 0.371812122 4.686158538 0.121527352 0.126002443 8.32E-07 6.080024272 -0.493147116 TNLSGRQS(ph)PSFK ddPTM_HeLa_A486_30min_R1 3 TNLSGRQSPSFK 12 1 Q6IN85-2;Q6IN85;Q6IN85-4 Q6IN85-2 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 0 TNLSGRQS(0.946)PS(0.054)FK;TNLSGRQS(0.999)PS(0.001)FK;TNLSGRQS(0.961)PS(0.039)FK ;; 152.94 4.50E-08 1012170000 2389370 1691110 1115970 1135430 2575300 1983100 3234340 3301650 1450430 3589710 TRUE FALSE FALSE 2221887.502 1557100.285 1548103.471 2643338.421 2252281.86 1738445.285 2425073.923 2549936.37 1576154.44 2690823.251 0.825727777 0.578670592 0.575327075 0.982353048 0.837023338 0.646064465 0.901238653 0.947641718 0.585751754 1 21.3596162 -13.99999999 0.041562849 1.958248827 0.215560006 0.163610176 0.151646335 1395.799866 4.317527179 166.7523256 47.77967768 1.00E-14 13.99999999 -1.742688821 TNNNQILEVKS(ph)PIK ddPTM_HeLa_A485_30min_R1 1 TNNNQILEVKSPIK 14 1 A0A0D9SF09;B1APT5;P42568-2;P42568 A0A0D9SF09 MLLT3 Protein AF-9 1 0 TNNNQILEVKS(1)PIK 194.51 1.85E-18 476170000 503410 293320 173060 1119000 527200 358020 849380 552310 296940 1594500 TRUE FALSE FALSE 615391.8178 327621.2225 237082.0956 1180128.137 474710.1169 376765.3736 667903.0242 416855.1065 356533.1343 1197020.495 0.514102992 0.273697254 0.198060181 0.985887996 0.396576432 0.314752651 0.557971252 0.348243918 0.297850485 1 20.19101642 -10.12857204 4.500087035 1.000058875 0.433429975 0.392663692 0.211948807 96488151.51 43434174.22 61950.51467 0.051756553 7.44E-11 10.12857204 -0.5666289 TNNNQILEVKS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 TNNNQILEVKSPIK 14 1 A0A0D9SF09;B1APT5;P42568-2;P42568 A0A0D9SF09 MLLT3 Protein AF-9 1 0 TNNNQILEVKS(1)PIK;TNNNQILEVKS(1)PIK ; 215.81 6.93E-28 1258650000 1410220 1325620 442240 1275990 1065310 2171600 2979800 2453100 1205500 3143800 TRUE FALSE FALSE 1311370.86 1220573.043 613487.1716 2970569.205 931688.8862 1903690.071 2234222.523 1894582.681 1309993.711 2356572.017 0.556473917 0.5179443 0.26033033 1.260546753 0.395357697 0.807821725 0.948081581 0.803957047 0.55588953 1 21.16825834 -5.227016442 24.99999363 0.802924442 0.452219019 0.352944232 0.23420076 730.567502 530580.9193 0.061090824 0.105805661 5.93E-06 5.227016442 -0.350705423 TNNNQILEVKS(ph)PIKQSK ddPTM_HeLa_A486_30min_R1 1 TNNNQILEVKSPIKQSK 17 2 A0A0D9SF09;B1APT5;P42568-2;P42568 A0A0D9SF09 MLLT3 Protein AF-9 1 0 TNNNQILEVKS(1)PIKQSK 125.11 8.54E-06 497460000 709940 509490 259010 479160 606240 714560 1161700 1089600 438700 1276000 TRUE FALSE FALSE 660176.8721 469116.1569 359305.6085 1115508.695 530199.7262 626404.8523 871030.3728 841521.8658 476726.8692 956481.2946 0.690214096 0.490460357 0.375653565 1.166262949 0.554323152 0.654905491 0.910661168 0.879810061 0.498417347 1 19.86737723 -4.43379645 0.081729094 1.222380662 9.21E-18 0.154961022 0.223728658 157.9749796 2.185627149 8.98477544 26.91912772 3.68E-05 4.43379645 -1.222380662 TNNPQFDEVFYFEVTRPCS(ph)YSK ddPTM_HeLa_A485_30min_R1 2 TNNPQFDEVFYFEVTRPCSYSK 22 1 Q14644-2;Q14644 Q14644-2 RASA3 Ras GTPase-activating protein 3 1 0 TNNPQFDEVFY(0.001)FEVT(0.064)RPCS(0.846)Y(0.007)S(0.082)K;TNNPQFDEVFYFEVT(0.001)RPCS(0.997)YS(0.002)K ; 112.11 5.85E-05 171626000 90206 65512 59472 101046 97977 71885 119397 97830 67241 153749 TRUE FALSE FALSE 110272.0135 73173.05852 81473.16764 106565.8871 88222.06586 75648.78744 93886.85557 73837.03911 80735.65193 115422.2038 0.955379553 0.633959984 0.705870837 0.923270251 0.76434224 0.655409314 0.813421096 0.639712609 0.699481116 1 16.81656126 -5.998250222 24.99965985 0.738719864 0.792680311 0.006868045 0.129762533 238.5852704 3408649.257 0.039204377 0.044146709 1.00E-06 5.998250222 0.053960447 TNPPTQKPPS(ph)PPMSGR ddPTM_HeLa_A485_30min_R1 8 TNPPTQKPPSPPMSGR 16 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TNPPTQKPPS(0.571)PPMS(0.428)GR;TNPPT(0.001)QKPPS(0.997)PPMS(0.002)GR;TNPPTQKPPS(0.96)PPMS(0.04)GR;TNPPT(0.007)QKPPS(0.827)PPMS(0.167)GR;TNPPT(0.005)QKPPS(0.978)PPMS(0.017)GR;TNPPT(0.038)QKPPS(0.952)PPMS(0.01)GR;TNPPTQKPPS(0.998)PPMS(0.002)GR;TNPPTQKPPS(0.998)PPMS(0.001)GR ;;;;;;; 147.67 3.15E-08 19863350000 1910850 1888470 1343780 3005490 2502120 2083880 3484330 3821920 1683930 4431260 TRUE FALSE FALSE 2335911.99 2109310.139 1840900.141 3169672.308 2253000.147 2192988.735 2739874.431 2884588.127 2021879.305 3326628.433 0.702186023 0.634068451 0.553383156 0.952818258 0.677262337 0.659222627 0.823619014 0.867120625 0.607786336 1 21.6656293 -14 0.13607833 1.908999916 0.621503886 0.335880933 0.118337425 165.6931788 1.395837879 41.2069626 0.79380763 1.00E-14 14 -1.28749603 TNPPTQKPPS(ph)PPMSGR ddPTM_HeLa_A486_30min_R1 8 TNPPTQKPPSPPMSGR 16 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TNPPT(0.001)QKPPS(0.965)PPMS(0.035)GR;TNPPTQKPPS(0.998)PPMS(0.002)GR;TNPPT(0.001)QKPPS(0.985)PPMS(0.014)GR;TNPPT(0.001)QKPPS(0.997)PPMS(0.002)GR;TNPPTQKPPS(0.994)PPMS(0.006)GR;TNPPTQKPPS(0.999)PPMSGR;TNPPTQKPPS(0.977)PPMS(0.023)GR;TNPPTQKPPS(1)PPMSGR ;;;;;;; 171.47 1.52E-12 19606610000 6812874 5864915 2999031 3933798 6036622 6884232 9799670 8727480 4968215 11497590 TRUE FALSE FALSE 6335326.714 5400157.776 4160336.12 9158080.547 5279452.579 6034925.45 7347688.916 6740423.324 5398863.876 8618518.627 0.735083022 0.626576098 0.482720558 1.062604949 0.612570769 0.700227697 0.852546619 0.782086065 0.626425968 1 23.03900849 -14 0.182355743 2.107899367 0.668698033 0.231312027 0.150652688 205.368316 1.984694485 82.96788056 0.454400604 1.00E-14 14 -1.439201335 TNPPTQKPPSPPMS(ph)GR ddPTM_HeLa_A486_30min_R1 1 TNPPTQKPPSPPMSGR 16 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TNPPTQKPPS(0.486)PPMS(0.514)GR 109.89 5.10E-06 0 240730 223500 108750 137480 246590 245940 333420 279720 175760 420280 TRUE FALSE FALSE 223856.0701 205789.046 150860.9124 320060.3879 215660.3828 215598.4233 249994.7894 216033.8622 190995.0183 315039.1524 0.710565872 0.653217368 0.478864012 1.015938449 0.684551051 0.684354378 0.793535621 0.685736552 0.606258038 1 18.26517161 -11.06192283 2.478053405 1.421515817 0.703978278 0.321366915 0.130107913 13771965.62 4664505.288 32848010.43 0.032294087 8.67E-12 11.06192283 -0.71753754 TNPS(ph)PTNPFSSDLQK ddPTM_HeLa_A485_30min_R1 1 TNPSPTNPFSSDLQK 15 0 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 TNPS(0.995)PT(0.005)NPFSSDLQK 221.13 1.67E-31 0 42576 50881 27227 55527 52994 43760 69511 57740 33596 77379 TRUE FALSE FALSE 52046.88431 56831.09034 37299.40031 58560.29941 47717.73129 46051.20593 54659.407 43579.17447 40338.40904 58089.83935 0.895972254 0.978330995 0.642098527 1.008098836 0.821447121 0.792758363 0.940946086 0.750203047 0.694414195 1 15.82599822 -6.432243955 1.084168485 0.816653143 0.871120816 0.008895464 0.124251936 2.367680223 5.748465783 0.072277483 0.055598294 3.70E-07 6.432243955 0.054467674 TNQELQEINR ddPTM_HeLa_A485_30min_R1 2 TNQELQEINR 10 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 295.34 1.38E-57 129540000 71184 79651 61374 85989 94022 87122 127888 128717 83271 149147 FALSE FALSE TRUE 87018.63522 88965.49158 84078.79659 90686.36133 84660.83955 91683.5732 100563.6841 97148.95393 99982.72589 111967.3977 0.77717833 0.794566038 0.750922128 0.80993542 0.756120453 0.81884169 0.89815148 0.867653941 0.892962844 1 16.77271919 -7.562428346 0.472968579 1.000347877 0.765250707 0.875294573 0.026134742 0.310408421 0.180119879 0.03009694 0.018793961 2.74E-08 7.562428346 -0.235097169 TNRGS(ph)QLHK ddPTM_HeLa_A485_30min_R1 1 TNRGSQLHK 9 1 P42356;P42356-2 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 T(0.24)NRGS(0.76)QLHK 61.235 0.014186 51424000 51465 40188 24498 80789 29932 41658 43072 49781 35567 98498 TRUE FALSE FALSE 62913.2117 44887.63701 33560.82965 85202.2985 26951.86498 43839.14846 33869.31533 37572.1317 42704.97066 73944.26132 0.850819395 0.607046932 0.453866589 1.152250316 0.364488934 0.592867488 0.458038457 0.508114234 0.577529208 1 16.17415057 -10.15452068 4.665854933 1.000043032 0.612698165 0.217304754 0.217065199 9.75E-05 1.77E-05 0.206379877 0.050048802 7.01E-11 10.15452068 -0.387344867 TNRGS(ph)QLHK ddPTM_HeLa_A486_30min_R1 1 TNRGSQLHK 9 1 P42356;P42356-2 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 T(0.155)NRGS(0.845)QLHK 47.288 0.028387 34481000 38224 21738 27227 23357 20387 72552 35385 35995 44002 53860 TRUE FALSE FALSE 35544.69499 20015.40171 37770.02356 54376.2764 17829.87236 63601.27189 26531.29874 27799.72427 47816.12879 40373.10543 0.880405275 0.495760767 0.935524359 1.346844039 0.441627469 1.575337622 0.657152787 0.688570373 1.184355979 1 15.30110694 -4.897848936 8.441286908 0.973861191 0.690082016 0.111605159 0.329382146 0.530570544 39.35553061 0.082399107 0.172529657 1.27E-05 4.897848936 -0.283779175 TNRT(ph)SQDYDQLPSCSDGSQAPARPPKPR ddPTM_HeLa_A486_30min_R1 1 TNRTSQDYDQLPSCSDGSQAPARPPKPR 28 3 Q13191 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 T(0.095)NRT(0.452)S(0.452)QDYDQLPSCSDGSQAPARPPKPR 205.58 1.80E-28 535970000 120930 130980 66090 51971 97933 138340 137950 141150 96510 116460 TRUE FALSE FALSE 112453.4315 120600.6678 91681.81795 120991.1145 85649.32995 121273.0173 103433.4509 109013.2263 104875.5645 87297.65797 1.288160921 1.38148801 1.05022082 1.385960601 0.981118302 1.389189815 1.184836493 1.24875316 1.201355992 1 16.41365533 -13.37517641 0.252819076 5.11E-11 1.255201668 0.229633575 0.131011152 193.369673 2.566836856 99.62159053 0.175303311 4.22E-14 13.37517641 1.255201668 TNRTS(ph)QDYDQLPSCSDGSQAPARPPKPR ddPTM_HeLa_A486_30min_R1 1 TNRTSQDYDQLPSCSDGSQAPARPPKPR 28 3 Q13191 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 T(0.002)NRT(0.178)S(0.82)QDYDQLPSCSDGSQAPARPPKPR 197.8 1.48E-27 911310000 349280 408080 228970 169680 332910 416050 467020 461570 312200 393300 TRUE FALSE FALSE 324797.2757 375742.2546 317633.316 395023.6152 291153.3235 364721.9811 350166.6564 356480.587 339261.7474 294815.12 1.101698161 1.274501303 1.077398323 1.339902835 0.987579346 1.237121017 1.187749992 1.209166568 1.150761017 1 18.16945099 -8.041482932 17.74873108 0.999999996 1.178423017 0.231682995 0.096072046 193.9058153 82965.71322 0.084284239 0.021762085 9.09E-09 8.041482932 0.17842302 TNS(ph)GISSASGGSTEPTTPDSERPAQALLR ddPTM_HeLa_A485_30min_R1 1 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 T(0.171)NS(0.585)GIS(0.171)S(0.036)AS(0.036)GGS(0.001)TEPTTPDSERPAQALLR 117.24 4.82E-05 352920000 43036 44964 35747 57211 67120 33740 50772 79279 33529 65204 TRUE FALSE FALSE 52609.20973 50222.14867 48971.30286 60336.29206 60437.29713 35506.57423 39924.14743 59835.70095 40257.96275 48949.84279 1.074757481 1.025992032 1.000438409 1.232614624 1.234678064 0.725366461 0.815613394 1.222388011 0.822432933 1 15.57901661 -6.246708675 24.993768 0.924712723 1.109138152 0.316917412 0.143978885 1142.860575 1939106.29 0.049909531 0.049709168 5.67E-07 6.246708675 0.18442543 TNS(ph)GISSASGGSTEPTTPDSERPAQALLR ddPTM_HeLa_A486_30min_R1 2 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 T(0.001)NS(0.895)GIS(0.086)S(0.015)AS(0.003)GGSTEPTTPDSERPAQALLR;T(0.004)NS(0.721)GIS(0.198)S(0.035)AS(0.035)GGS(0.005)T(0.001)EPTTPDSERPAQALLR ; 198.44 8.33E-29 556370000 51596 60982 44121 32933 61805 52523 74222 75842 50355 77643 TRUE FALSE FALSE 47979.38684 56149.56423 61205.8328 76669.68834 54052.84059 46043.24627 55650.87056 58574.43222 54719.81194 58200.68743 0.824378353 0.96475775 1.05163419 1.317333037 0.928731996 0.791111726 0.956189231 1.006421656 0.940191849 1 15.82874857 TNS(ph)MGSATGPLPGTK ddPTM_HeLa_A486_30min_R1 1 TNSMGSATGPLPGTK 15 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 T(0.001)NS(0.999)MGSATGPLPGTK 161.75 3.12E-08 0 333470 323110 146420 142590 274320 353780 459990 392700 231950 458930 TRUE FALSE FALSE 310095.475 297505.5869 203117.7453 331956.7261 239912.2277 310134.2206 344895.6367 303290.7826 252055.6128 344010.9409 0.901411665 0.864814317 0.590439783 0.964959792 0.697397086 0.901524294 1.002571708 0.881631212 0.732696501 1 18.39209492 -6.44476915 24.99934029 0.902603286 0.803809925 0.146859867 0.120355878 234.7340255 75126.34373 0.041834413 0.036894472 3.59E-07 6.44476915 -0.098793361 TNS(ph)MQQLEQWIK ddPTM_HeLa_A485_30min_R1 3 TNSMQQLEQWIK 12 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;Q9HAU0-3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 TNS(1)MQQLEQWIK;T(0.001)NS(0.999)MQQLEQWIK;T(0.113)NS(0.887)MQQLEQWIK ;; 366.96 4.99E-101 681690000 680516 573007 411332 910070 711410 533648 880210 820960 365845 1050230 TRUE FALSE FALSE 831894.4364 640015.1842 563500.8238 959784.8197 640579.5225 561588.9841 692145.9428 619618.2728 439266.7358 788426.9891 1.055131861 0.811762145 0.71471529 1.217341406 0.812477923 0.712290411 0.877882103 0.785891758 0.5571432 1 19.58861764 -5.978472322 24.99949578 0.777120139 0.934571791 0.180841765 0.164441652 430.2548306 499640.6404 0.050546898 0.057310045 1.05E-06 5.978472322 0.157451653 TNS(ph)MQQLEQWIK ddPTM_HeLa_A486_30min_R1 2 TNSMQQLEQWIK 12 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;Q9HAU0-3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 T(0.246)NS(0.754)MQQLEQWIK;TNS(1)MQQLEQWIK ; 324.7 1.98E-61 809610000 706260 539540 283340 301280 502270 660290 750120 720930 497420 862820 TRUE FALSE FALSE 656754.8211 496784.8854 393056.8361 701395.0658 439270.6131 578830.1331 562432.042 556789.9768 540536.7661 646764.256 1.015446996 0.768108133 0.607728137 1.084467887 0.679181957 0.894963084 0.869609037 0.860885511 0.835755472 1 19.30288042 -11.70764931 0.314025652 1.280436963 0.831467562 0.102936283 0.134215083 136.060824 4.527832993 25.75206701 0.123388606 1.96E-12 11.70764931 -0.448969401 TNS(ph)PGFQK ddPTM_HeLa_A485_30min_R1 5 TNSPGFQK 8 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 TNS(1)PGFQK;TNS(1)PGFQK;TNS(1)PGFQK;TNS(1)PGFQK;T(0.001)NS(0.999)PGFQK ;;;; 141.71 0.00040415 2480700000 5617340 4565370 3454910 8830130 7015920 5071040 7992650 7047990 4438340 10854400 TRUE FALSE FALSE 6866897.903 5099250.308 4733024.98 9312497.643 6317390.37 5336551.813 6284955.034 5319459.402 5329074.127 8148597.84 0.842709143 0.625782547 0.580839191 1.142834366 0.775273304 0.654904306 0.771292823 0.652806717 0.653986641 1 22.9581204 -6.017568179 24.55106732 0.72518047 0.793826522 0.012053543 0.170498021 2629.248148 3674305.091 0.056776991 0.058020421 9.60E-07 6.017568179 0.068646052 TNS(ph)PGFQK ddPTM_HeLa_A486_30min_R1 6 TNSPGFQK 8 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 TNS(1)PGFQK;TNS(1)PGFQK;T(0.009)NS(0.991)PGFQK;T(0.001)NS(0.999)PGFQK;TNS(1)PGFQK;T(0.003)NS(0.997)PGFQK ;;;;; 140.48 0.0004217 3503790000 5416850 5244630 2603120 2505590 4632970 5956330 7301640 6774890 4233180 7847570 TRUE FALSE FALSE 5037156.788 4829026.418 3611117.778 5833140.146 4051859.702 5221498.564 5474692.443 5232395.442 4600115.451 5882487.393 0.856297082 0.820915728 0.613875991 0.99161116 0.688800406 0.887634467 0.930676443 0.889486894 0.782001753 1 22.48799489 -6.47574428 24.7631243 0.893878156 0.795866902 0.192664341 0.105986114 654.5393006 343876.6362 0.035894843 0.031655295 3.34E-07 6.47574428 -0.098011254 TNS(ph)PGFQKK ddPTM_HeLa_A485_30min_R1 2 TNSPGFQKK 9 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 T(0.118)NS(0.882)PGFQKK;T(0.072)NS(0.928)PGFQKK ; 82.362 0.0038861 420370000 353360 368810 192368 401420 519740 513280 855860 1039470 311450 627980 TRUE FALSE FALSE 431963.7129 411939.1213 263532.9283 423348.5582 467992.8607 540154.5471 672998.5193 784538.3527 373955.1582 471436.1431 0.916271947 0.873796223 0.559000264 0.89799767 0.992696185 1.14576397 1.427549689 1.664145535 0.793225474 1 18.84670284 -6.088652953 1.891478686 1.271636802 0.794677447 0.371102916 0.239023742 0.327586662 2.332435216 0.091882847 0.094937707 8.15E-07 6.088652953 -0.476959355 TNS(ph)PGFQKK ddPTM_HeLa_A486_30min_R1 2 TNSPGFQKK 9 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 T(0.096)NS(0.904)PGFQKK;T(0.004)NS(0.996)PGFQKK ; 75.479 0.0066042 448830000 744420 484510 246060 362170 586290 584690 907420 863050 384220 1086160 TRUE FALSE FALSE 692240.0022 446115.663 341341.0217 843150.0631 512752.0413 512556.8925 680373.9183 666552.3552 417524.499 814178.4663 0.850231283 0.547933508 0.419245946 1.035583841 0.629778436 0.629538748 0.83565698 0.818680895 0.512816927 1 19.63498554 -11.40586812 2.205835853 3.367997447 0.698671123 0.207258221 0.177345902 8890349.73 765208.6077 105367313.6 0.043853395 3.93E-12 11.40586812 -2.669326324 TNS(ph)SSSSPVVLK ddPTM_HeLa_A485_30min_R1 4 TNSSSSSPVVLK 12 0 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 T(0.013)NS(0.949)S(0.035)S(0.002)SSPVVLK;TNS(0.575)S(0.133)S(0.133)S(0.118)S(0.04)PVVLK;TNS(0.827)S(0.086)S(0.086)SS(0.001)PVVLK;T(0.003)NS(0.974)S(0.022)S(0.001)SSPVVLK ;;; 180.95 7.98E-13 924250000 854995 867971 644238 1363190 1064549 852473 1335922 1185410 735433 1671900 TRUE FALSE FALSE 1045185.688 969472.6581 882568.4452 1437657.618 958558.7637 897107.1681 1050491.351 894686.3388 883027.6573 1255126.099 0.83273361 0.772410564 0.703171136 1.145428829 0.763715108 0.714754612 0.836960806 0.712825858 0.703537006 1 20.25940088 TNS(ph)SSSSPVVLK ddPTM_HeLa_A486_30min_R1 4 TNSSSSSPVVLK 12 0 Q7Z589;Q7Z589-5;Q7Z589-7;Q7Z589-2;E9PMC9;Q7Z589-6;Q7Z589-4 Q7Z589 EMSY;C11orf30 Protein EMSY 1 0 TNS(0.479)S(0.479)S(0.04)S(0.001)SPVVLK;TNS(0.81)S(0.095)S(0.095)SSPVVLK;TNS(0.915)S(0.082)S(0.003)SSPVVLK;T(0.004)NS(0.983)S(0.013)SSSPVVLK ;;; 233.28 2.77E-24 1196970000 872359 894275 482895 403690 830544 972892 1196084 1096264 639329 1249686 TRUE FALSE FALSE 811211.139 823409.3921 669884.8764 939810.7214 726369.427 852866.4767 896811.1323 846668.6185 694746.5525 936756.4915 0.865978668 0.879000466 0.715111005 1.003260431 0.775409014 0.910446295 0.957357798 0.903829999 0.741651175 1 19.83731454 -5.261531468 24.99999073 0.892621131 0.825927098 0.134354263 0.090353318 19.93839161 5413368.825 0.024369469 0.03895516 5.48E-06 5.261531468 -0.066694033 TNS(ph)TGGSSGSSVGGGSGK ddPTM_HeLa_A485_30min_R1 7 TNSTGGSSGSSVGGGSGK 18 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 TNS(0.953)T(0.047)GGSSGSSVGGGSGK;TNS(0.603)T(0.397)GGSSGSSVGGGSGK;TNS(0.506)T(0.356)GGS(0.137)S(0.001)GSSVGGGSGK;TNS(0.5)T(0.5)GGSSGSSVGGGSGK;TNS(0.988)T(0.012)GGSSGSSVGGGSGK;T(0.002)NS(0.981)T(0.018)GGSSGSSVGGGSGK;T(0.207)NS(0.76)T(0.032)GGS(0.001)SGSSVGGGSGK ;;;;;; 365.42 2.04E-129 7120797000 3854929 3206705 2256454 6426480 4616981 3621117 6505400 6056410 3370777 8221630 TRUE FALSE FALSE 4712444.657 3581701.255 3091210.233 6777542.33 4157298.16 3810713.087 5115468.146 4571065.951 4047261.025 6172128.949 0.763503922 0.580302402 0.500833709 1.098088259 0.673559836 0.61740659 0.828801243 0.740597935 0.655731768 1 22.55733677 -11.65946099 1.927058859 6.258895008 0.718119596 0.229106022 0.155376749 5859796.75 210111.7713 135096539.2 0.03983048 2.19E-12 11.65946099 -5.540775412 TNS(ph)TGGSSGSSVGGGSGK ddPTM_HeLa_A486_30min_R1 6 TNSTGGSSGSSVGGGSGK 18 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 TNS(0.963)T(0.037)GGSSGSSVGGGSGK;TNS(0.699)T(0.301)GGSSGSSVGGGSGK;T(0.001)NS(0.5)T(0.5)GGSSGSSVGGGSGK;TNS(0.497)T(0.497)GGS(0.005)SGSSVGGGSGK;T(0.01)NS(0.96)T(0.03)GGSSGSSVGGGSGK;TNS(0.974)T(0.026)GGSSGSSVGGGSGK ;;;;; 369.47 1.54E-129 5288379000 2251063 1812154 1114499 1202293 1833319 2747043 3347426 2839072 1863457 3486172 TRUE FALSE FALSE 2093275.108 1668552.317 1546062.86 2798998.865 1603367.036 2408140.765 2509864.609 2192677.282 2024982.953 2613211.84 0.801035368 0.638506336 0.591633191 1.071095279 0.613561829 0.921525277 0.960452027 0.839073683 0.774901951 1 21.31739265 -5.236875699 24.98687224 0.869851818 0.6732031 0.342948987 0.129677293 907.9542288 923595.5379 0.034061623 0.058962042 5.80E-06 5.236875699 -0.196648718 TNSGISS(ph)ASGGSTEPTTPDSERPAQALLR ddPTM_HeLa_A486_30min_R1 1 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-2;Q86X10-3;Q86X10;Q86X10-4;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 T(0.044)NS(0.221)GIS(0.221)S(0.309)AS(0.056)GGS(0.021)T(0.005)EPT(0.073)T(0.051)PDSERPAQALLR 132 1.59E-06 379230000 34223 27923 27448 9748.4 30865 24346 36514 30530 23274 37979 TRUE FALSE FALSE 31824.14443 25710.27979 38076.60068 22694.76786 26993.6239 21342.43805 27377.81099 23578.98547 25291.40906 28468.8112 1.11785997 0.903103386 1.337484745 0.797180033 0.948182336 0.749677881 0.961677353 0.828239202 0.888390066 1 14.79709463 -5.293394219 24.99832477 0.875325716 1.097844936 0.44056245 0.121795933 578.0081857 452175.587 0.032054699 0.047549497 5.09E-06 5.293394219 0.222519219 TNSLMVSR ddPTM_HeLa_A486_30min_R1 1 TNSLMVSR 8 0 F8W9Z1;J3KP11;Q15878-2;Q15878-3;Q15878 F8W9Z1 CACNA1E Voltage-dependent R-type calcium channel subunit alpha-1E 0 0 49.57 0.036844 0 60296 50805 41665 3521.6 52185 44243 54861 63538 64413 51274 FALSE FALSE TRUE 56069.56177 46779.02677 57798.80383 8198.462772 45639.47069 38784.74849 41134.19754 49071.78442 69996.3707 38434.65666 1.45882822 1.217105364 1.50381996 0.21330912 1.187456183 1.009108754 1.070237153 1.276758756 1.821178509 1 15.23012016 -7.522027254 24.99549486 1.456715728 1.087763892 0.100731844 0.380794761 66.5758099 1954693.218 0.248633519 0.096512045 3.01E-08 7.522027254 -0.368951836 TNSMSS(ph)SGLGSPNRS(ph)SPSIICMPK ddPTM_HeLa_A485_30min_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 2 0 T(0.006)NS(0.008)MS(0.047)S(0.342)S(0.299)GLGS(0.299)PNRS(0.599)S(0.401)PSIICMPK 116.94 0.00014593 583450000 416510 371960 275200 550250 631940 393990 698800 651030 387500 764140 TRUE FALSE FALSE 509161.2126 415457.4864 377007.932 580308.7642 569021.8347 414618.7072 549495.6713 491363.8717 465267.6956 573653.961 0.88757552 0.724230136 0.657204443 1.011600727 0.991925226 0.722767967 0.957886999 0.856550996 0.81105985 1 19.12982121 -11.31460229 0.022169513 1.959951807 2.53E-06 0.139496497 0.114021642 3245.12734 9.187442749 493.0984981 331.8503525 4.85E-12 11.31460229 -1.959949277 TNSMSSSGLGS(ph)PNR ddPTM_HeLa_A485_30min_R1 11 TNSMSSSGLGSPNR 14 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSS(0.001)GLGS(0.999)PNR;TNSMSSSGLGS(1)PNR ;;;;;;;;;; 236.82 3.51E-35 8435050000 2098413 2638896 2419642 2530654 3343761 2370845 3536960 3538740 2246536 3614160 TRUE FALSE FALSE 2565197.732 2947491.932 3314768.266 2668897.22 3010844.414 2494978.778 2781259.602 2670858.466 2697395.169 2713216.426 0.945445305 1.086346044 1.221711705 0.983665437 1.109695631 0.919564969 1.025078418 0.984388286 0.994168819 1 21.3715727 -6.248608164 24.92173555 0.986191759 1.074017531 0.247727773 0.073581021 1096.50079 2129706.142 0.024368154 0.024214693 5.64E-07 6.248608164 0.087825772 TNSMSSSGLGS(ph)PNR ddPTM_HeLa_A486_30min_R1 10 TNSMSSSGLGSPNR 14 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR ;;;;;;;;; 324.25 1.67E-69 8851110000 3037930 3017740 2182874 1082871 3179450 2997450 3594240 3494460 2558406 3557630 TRUE FALSE FALSE 2824986.795 2778603.292 3028141.272 2520978.413 2780653.734 2627655.095 2694923.136 2698847.742 2780170.692 2666776.292 1.0593265 1.041933401 1.135506297 0.945328043 1.042702285 0.985330154 1.010554633 1.012026299 1.042521152 1 21.34666538 -5.260775228 24.9999986 1.006916713 1.075223196 0.486559838 0.034481274 52.74677187 1985489.866 0.009126856 0.014709392 5.49E-06 5.260775228 0.068306484 TNSMSSSGLGS(ph)PNRS(ph)SPSIICMPK ddPTM_HeLa_A485_30min_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 2 0 TNS(0.001)MS(0.002)S(0.012)S(0.018)GLGS(0.967)PNRS(0.68)S(0.317)PS(0.003)IICMPK 104.53 0.00043413 773710000 305910 248210 218630 382220 404420 293310 462940 440650 226560 501410 TRUE FALSE FALSE 373958.6241 277236.0004 299510.335 403099.7108 364154.5248 308667.2581 364029.0871 332579.8966 272028.5139 376417.7148 0.993467123 0.736511565 0.795686077 1.070884007 0.967421326 0.820012571 0.967088086 0.883539439 0.722677236 1 18.521975 -5.30601151 0.005844604 1.772347662 2.14E-07 0.011535212 0.114453018 105974.6387 142.2452892 20954.83067 22186.09157 4.94E-06 5.30601151 -1.772347449 TNSMSSSGLGS(ph)PNRS(ph)SPSIICMPK ddPTM_HeLa_A486_30min_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 2 0 T(0.037)NS(0.043)MS(0.094)S(0.104)S(0.094)GLGS(0.631)PNRS(0.668)S(0.319)PS(0.011)IICMPK 94.75 0.0021894 601110000 321020 335900 180570 140220 352130 348820 412710 446610 295390 492120 TRUE FALSE FALSE 298518.1557 309282.0607 250491.5398 326439.2463 307962.5719 305786.1349 309445.5928 344926.6524 320994.643 368889.9488 0.809233639 0.838412816 0.67904138 0.884923125 0.834835899 0.828935936 0.838856124 0.935039443 0.870163701 1 18.49283095 -7.760487019 0.356594071 1.012855114 0.781040315 0.567253448 0.052272389 0.994103315 0.388762031 0.085911287 0.057870741 1.74E-08 7.760487019 -0.231814798 TNSMSSSGLGS(ph)PNRSS(ph)PSIICMPK ddPTM_HeLa_A486_30min_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 2 0 T(0.023)NS(0.029)MS(0.152)S(0.135)S(0.152)GLGS(0.511)PNRS(0.399)S(0.593)PS(0.007)IICMPK 86.543 0.0036781 597280000 736790 657630 396300 275860 636570 692970 889130 882320 570640 1027700 TRUE FALSE FALSE 685144.8258 605517.0038 549757.9733 642216.0212 556725.4548 607478.407 666660.2697 681434.9969 620103.5347 770357.2308 0.889385857 0.786021056 0.71364031 0.833660016 0.722684792 0.788567151 0.865391072 0.884570131 0.804955818 1 19.55516808 -8.590041838 0.482200762 1.011811435 0.785486168 0.521846295 0.056173359 1.809691945 0.728455562 0.110828236 0.03176321 2.57E-09 8.590041838 -0.226325267 TNSMSSSGLGSPNRS(ph)SPSIICMPK ddPTM_HeLa_A486_30min_R1 1 TNSMSSSGLGSPNRSSPSIICMPK 24 1 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 TNSMSSSGLGS(0.002)PNRS(0.565)S(0.428)PS(0.005)IICMPK 99.446 0.00058967 268080000 164420 138240 81399 68238 181270 156110 204390 208080 112870 210080 TRUE FALSE FALSE 152895.0071 127285.3589 112918.8727 158861.5126 158533.4263 136850.7354 153249.4602 160704.7264 122653.6625 157474.6006 0.970918526 0.808291359 0.717060861 1.00880721 1.006723787 0.869033704 0.973169385 1.020512043 0.778879019 1 17.26475963 -5.27851845 24.98955674 0.951700598 0.829710345 0.262000283 0.09143688 1045.260673 1529389.733 0.025553208 0.03800988 5.27E-06 5.27851845 -0.121990253 TNSS(ph)DSERS(ph)PDLGHSTQIPR ddPTM_HeLa_A485_30min_R1 1 TNSSDSERSPDLGHSTQIPR 20 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 2 0 T(0.22)NS(0.346)S(0.434)DSERS(1)PDLGHSTQIPR 150.06 1.57E-09 514590000 225250 279620 251310 370970 374430 210490 358160 367350 216520 400500 TRUE FALSE FALSE 275356.0854 312319.1266 344280.0269 391235.1518 337150.4345 221510.9309 281636.1901 277256.8365 259973.578 300662.7207 0.915830485 1.038769043 1.14507055 1.301242638 1.121357625 0.736742255 0.936718026 0.922152357 0.864668481 1 18.19778647 -6.233516271 24.18122917 0.889982109 1.113994122 0.482491859 0.109752433 437.1524086 378571.0053 0.038436442 0.038426789 5.84E-07 6.233516271 0.224012013 TNSS(ph)DSERS(ph)PDLGHSTQIPR ddPTM_HeLa_A486_30min_R1 2 TNSSDSERSPDLGHSTQIPR 20 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 2 0 T(0.243)NS(0.344)S(0.411)DS(0.004)ERS(0.998)PDLGHSTQIPR;T(0.072)NS(0.4)S(0.528)DSERS(1)PDLGHSTQIPR ; 156.51 5.42E-10 1481470000 476670 540340 394452 234040 544820 476870 564590 513330 421720 529570 TRUE FALSE FALSE 443257.8945 497521.4905 547194.3782 544856.9477 476483.5954 418038.6279 423323.6104 396455.9649 458275.0292 396962.2251 1.116624874 1.253322002 1.378454532 1.372566238 1.20032478 1.053094228 1.066407793 0.998724664 1.154455009 1 18.5986422 -6.117497406 3.479663891 1.055001775 1.285714352 0.644646051 0.079296492 0.16415395 3.656060261 0.028650964 0.029008278 7.63E-07 6.117497406 0.230712576 TNST(ph)GGSSGSSVGGGSGK ddPTM_HeLa_A485_30min_R1 1 TNSTGGSSGSSVGGGSGK 18 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 TNS(0.201)T(0.799)GGSSGSSVGGGSGK 401.6 3.79E-162 2655000000 696950 588090 374180 1120500 797280 622340 1107300 1041100 559540 1394800 TRUE FALSE FALSE 851984.1231 656862.0098 512604.7529 1181710.078 717900.0038 654924.7601 870716.3092 785768.5926 671834.5456 1047102.029 0.813659127 0.627314236 0.489546136 1.128552944 0.685606544 0.62546413 0.831548679 0.750422185 0.641613259 1 19.99797059 -11.14551316 2.305170231 1.578270426 0.732930487 0.195000506 0.162967451 14823436.57 3381241.094 44847751.76 0.040404187 7.15E-12 11.14551316 -0.845339939 TNST(ph)GGSSGSSVGGGSGK ddPTM_HeLa_A486_30min_R1 2 TNSTGGSSGSSVGGGSGK 18 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 TNS(0.186)T(0.813)GGS(0.001)SGSSVGGGSGK;TNS(0.2)T(0.771)GGS(0.027)S(0.002)GSSVGGGSGK ; 385.91 1.32E-144 4639200000 1660740 1341380 780560 892340 1348880 1983980 2477500 2174180 1376710 2469400 TRUE FALSE FALSE 1544330.702 1235084.164 1082813.736 2077412.616 1179690.893 1739216.719 1857603.296 1679166.676 1496044.331 1851046.167 0.834301559 0.667235743 0.584973922 1.122291088 0.637310357 0.939585814 1.003542391 0.907144676 0.808215569 1 20.81990945 -5.241892528 24.98501842 0.905910557 0.692676948 0.361365602 0.134289253 921.1664892 1177444.485 0.035518511 0.061407849 5.73E-06 5.241892528 -0.213233609 TNT(ph)PVKEDWNVR ddPTM_HeLa_A485_30min_R1 5 TNTPVKEDWNVR 12 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 1 0 T(0.014)NT(0.986)PVKEDWNVR;T(0.006)NT(0.994)PVKEDWNVR;T(0.006)NT(0.994)PVKEDWNVR;T(0.005)NT(0.995)PVKEDWNVR;T(0.001)NT(0.999)PVKEDWNVR ;;;; 140.8 2.23E-06 9750040000 3450930 2639910 1841320 6934250 4120260 3288880 5844990 4858410 2482470 9055700 TRUE FALSE FALSE 4218577.473 2948624.51 2522500.892 7313050.519 3710032.447 3461080.671 4596160.137 3666877.33 2980678.958 6798280.648 0.62053594 0.433730919 0.371049832 1.075720597 0.545730993 0.509111178 0.676076846 0.539383047 0.438446 1 22.69673849 -10.95864819 2.669892451 1.324278308 0.581769396 0.313344739 0.186980972 25290691.62 13625689.61 50835636.2 0.047857171 1.10E-11 10.95864819 -0.742508912 TNT(ph)PVKEDWNVR ddPTM_HeLa_A486_30min_R1 5 TNTPVKEDWNVR 12 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;A0A494C0Q7 A0A494C1K3 GTF2I General transcription factor II-I 1 0 T(0.036)NT(0.964)PVKEDWNVR;T(0.041)NT(0.959)PVKEDWNVR;T(0.248)NT(0.752)PVKEDWNVR;T(0.169)NT(0.831)PVKEDWNVR;TNT(1)PVKEDWNVR ;;;; 144.73 2.39E-07 7861490000 4679830 4534150 1949260 3990810 3736080 5480110 8078840 6701640 3465540 10074280 TRUE FALSE FALSE 4351798.084 4174847.441 2704065.675 9290807.364 3267466.009 4804029.746 6057428.783 5175822.868 3765935.798 7551614.715 0.57627385 0.55284169 0.358077812 1.230307386 0.432684417 0.636159275 0.802136895 0.685392868 0.498692788 1 22.84835373 -11.53329474 2.161967971 6.014323103 0.647508867 0.178464408 0.23048436 7866612.855 380301.4812 194625239.1 0.057646921 2.93E-12 11.53329474 -5.366814236 TNTMNGS(ph)KSPVISR ddPTM_HeLa_A486_30min_R1 1 TNTMNGSKSPVISR 14 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 T(0.002)NT(0.031)MNGS(0.557)KS(0.41)PVISR 67.449 0.0030432 0 152490 150690 69430 112600 142810 178790 246480 211750 121000 249060 TRUE FALSE FALSE 141801.2385 138748.7756 96315.1554 262138.4905 124897.4381 156732.7076 184808.097 163539.1475 131488.3774 186693.7549 0.759539271 0.743189164 0.515899182 1.404109584 0.668996337 0.839517678 0.989899727 0.875975458 0.704299817 1 17.51031414 TNTMNGSKS(ph)PVISR ddPTM_HeLa_A485_30min_R1 3 TNTMNGSKSPVISR 14 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 T(0.005)NT(0.012)MNGS(0.246)KS(0.717)PVIS(0.02)R;TNTMNGS(0.001)KS(0.999)PVISR;TNTMNGS(0.098)KS(0.902)PVISR ;; 147.84 3.47E-08 3014330000 911689 783246 624055 1342960 1344420 822675 1541930 1356810 775410 1845220 TRUE FALSE FALSE 1114491.073 874839.8064 854918.9136 1416322.504 1210564.824 865748.9909 1212484.059 1024050.22 931027.6745 1385240.613 0.804546923 0.631543573 0.617162755 1.022437901 0.873902204 0.624980948 0.875287692 0.739258011 0.672105384 1 20.40170516 -11.37959935 2.254971746 2.695959706 0.76377204 0.240582132 0.126641365 4887294.317 829380.7587 41953708.61 0.03258412 4.17E-12 11.37959935 -1.932187666 TNTMNGSKS(ph)PVISR ddPTM_HeLa_A486_30min_R1 2 TNTMNGSKSPVISR 14 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 TNTMNGS(0.01)KS(0.99)PVISR;TNTMNGS(0.032)KS(0.968)PVISR ; 180.05 1.28E-17 1632080000 510110 503680 300042 321904 486300 608270 838060 760810 473750 806500 TRUE FALSE FALSE 474353.9232 463766.5624 416226.2978 749408.7801 425303.7194 533227.8318 628368.5239 587590.1714 514815.0314 604547.1506 0.784643386 0.767130508 0.688492696 1.239620068 0.703507938 0.882028526 1.039403665 0.97195094 0.851571347 1 19.20549534 TNTMNGSKS(ph)PVISRPK ddPTM_HeLa_A485_30min_R1 3 TNTMNGSKSPVISRPK 16 2 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 T(0.06)NT(0.06)MNGS(0.215)KS(0.666)PVISRPK;TNTMNGSKS(1)PVISRPK;TNTMNGSKS(0.998)PVIS(0.002)RPK ;; 145.9 5.25E-08 11267900000 3542920 2840300 1922760 4554400 4084400 3772070 7092700 6317800 2899860 7137300 TRUE FALSE FALSE 4331030.331 3172448.378 2634068.937 4803195.34 3677742.795 3969569.752 5577286.703 4768349.644 3481835.303 5358102.462 0.808314205 0.592084306 0.491604809 0.896435888 0.686389038 0.740853647 1.040907064 0.889932523 0.649826189 1 22.35329074 -6.022060292 1.100104658 0.877439791 0.651475967 0.273618978 0.144797337 0.670132911 1.720184822 0.071078082 0.080935224 9.50E-07 6.022060292 -0.225963825 TNTMNGSKS(ph)PVISRPK ddPTM_HeLa_A486_30min_R1 2 TNTMNGSKSPVISRPK 16 2 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 TNT(0.002)MNGS(0.034)KS(0.965)PVISRPK;TNTMNGS(0.002)KS(0.997)PVISRPK ; 184.56 6.70E-18 22492100000 8809700 6717500 3281560 4640570 6745200 8826100 12728600 11739500 5739000 14147700 TRUE FALSE FALSE 8192185.523 6185180.835 4552267.915 10803481.48 5899154.12 7737225.519 9543769.651 9066672.121 6236461.141 10605023.83 0.772481576 0.583231206 0.429255793 1.01871355 0.556260336 0.729581153 0.899929109 0.85494123 0.588066678 1 23.33824453 -14 0.081211201 1.913669799 0.44514485 0.210527013 0.169312164 378.1152798 2.165308742 61.88255022 5.567874197 1.00E-14 14 -1.468524949 TNTNVNCPIECFMPLDVQADREDS(ph)RE ddPTM_HeLa_A485_30min_R1 2 TNTNVNCPIECFMPLDVQADREDSRE 26 2 H0Y7Z1;P02751-12;P02751-10;P02751-6;P02751-5;P02751-9;P02751-14;P02751-13;P02751-8;P02751-17;P02751-3;P02751-11;P02751-1;P02751-7;P02751 H0Y7Z1 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 1 0 TNTNVNCPIECFMPLDVQADREDS(1)RE;TNTNVNCPIECFMPLDVQADREDS(1)RE ; 208.37 1.02E-28 234190000 57541 58320 67412 79219 121895 48263 74181 61956 48006 84687 TRUE FALSE FALSE 70340.79694 65140.01668 92350.50405 83546.53338 109758.7058 50789.97605 58331.62335 46761.19386 57640.36386 63576.08945 1.106403328 1.024599299 1.452598058 1.314118784 1.726414864 0.798884872 0.917508828 0.735515416 0.906635881 1 15.95619666 -6.297125869 24.96767841 0.858041107 1.314651168 0.58664938 0.189904858 444.8350944 311222.8258 0.069827819 0.061584496 5.05E-07 6.297125869 0.456610061 TNTNVNCPIECFMPLDVQADREDS(ph)RE ddPTM_HeLa_A486_30min_R1 2 TNTNVNCPIECFMPLDVQADREDSRE 26 2 H0Y7Z1;P02751-12;P02751-10;P02751-6;P02751-5;P02751-9;P02751-14;P02751-13;P02751-8;P02751-17;P02751-3;P02751-11;P02751-1;P02751-7;P02751 H0Y7Z1 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 1 0 TNTNVNCPIECFMPLDVQADREDS(1)RE;TNTNVNCPIECFMPLDVQADREDS(1)RE ; 90.323 0.0027654 143055000 45840 54443 51265 35260 72845 50045 66836 57751 30770 54645 TRUE FALSE FALSE 42626.85272 50128.7384 71116.18092 82087.06194 63708.10085 43870.95672 50112.92588 44602.358 33437.16837 40961.53632 1.040655614 1.22380025 1.736169766 2.004003495 1.555315219 1.071028107 1.223414217 1.088883914 0.816306501 1 15.32198221 -6.264666703 18.88595978 1.056949006 1.535767276 0.443984292 0.263121295 10.43605923 61066.23789 0.101512587 0.093732209 5.44E-07 6.264666703 0.47881827 TNYNDRYDEIRR ddPTM_HeLa_A485_30min_R1 4 TNYNDRYDEIRR 12 2 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 0 ;;; ;;; 129.77 2.51E-05 2137970000 632640 985010 919760 648110 1259980 870840 1214360 1440210 826740 1041250 FALSE FALSE TRUE 773368.5854 1100198.351 1260017.498 683514.6082 1134531.967 916435.8358 954902.0656 1086996.239 992659.1347 781685.5378 0.989360233 1.407469242 1.611923769 0.874411224 1.451391784 1.172384279 1.22159362 1.390579954 1.26989574 1 19.57622882 -10.3418511 4.589164273 0.999739084 1.273434806 0.127310594 0.207547851 0.000530303 7.61E-05 0.19234211 0.046605703 4.55E-11 10.3418511 0.273695722 TNYNDRYDEIRR ddPTM_HeLa_A486_30min_R1 5 TNYNDRYDEIRR 12 2 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 0 ;;;; ;;;; 160.84 2.56E-10 2997630000 2279900 2189542 1800494 1021863 2788550 2035561 2682840 2823280 1846809 2706310 FALSE FALSE TRUE 2120090.783 2016034.718 2497693.496 2378948.706 2438784.057 1784434.18 2011565.056 2180480.776 2006891.891 2028632.361 1.045083784 0.993790081 1.231220375 1.172685969 1.202181383 0.879624231 0.991586792 1.074852604 0.989283189 1 20.95207601 -6.251085447 24.99346281 0.992029987 1.129587842 0.445168327 0.079122897 774.9575423 1870678.619 0.028537071 0.028225776 5.61E-07 6.251085447 0.137557855 TPAAAAAMNLAS(ph)PR ddPTM_HeLa_A485_30min_R1 7 TPAAAAAMNLASPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR ;;;;;; 219.09 1.17E-27 7775290000 1364090 1804270 1666330 1392120 2023300 1743890 1851690 1973740 1442660 1722140 TRUE FALSE FALSE 1667527.114 2015263.681 2282774.809 1468167.991 1821853.148 1835197.384 1456061.305 1489677.17 1732188.629 1292842.192 1.289814894 1.558785515 1.765702592 1.135612683 1.409184477 1.419506105 1.126248288 1.15224981 1.339829904 1 20.30211476 -6.795734831 0.36496551 1.025620961 1.549317144 0.384744966 0.171294833 1.454610936 0.486138003 0.213323711 0.269231487 1.60E-07 6.795734831 0.523696183 TPAAAAAMNLAS(ph)PR ddPTM_HeLa_A486_30min_R1 5 TPAAAAAMNLASPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR ;;;; 195.45 2.34E-18 2826040000 1355830 1463320 1222990 643900 1872980 1610980 1819110 1882730 1289960 1703410 TRUE FALSE FALSE 1260793.319 1347361.194 1696564.481 1499031.741 1638053.384 1412233.667 1363949.437 1454073.479 1401774.771 1276865.049 0.987413133 1.055210334 1.328695215 1.173993871 1.282871189 1.106016386 1.068201717 1.138783993 1.097825313 1 20.28417462 -6.500418759 24.62449214 1.087673919 1.171566914 0.154576097 0.097630158 1355.423094 1486050.774 0.036549681 0.031977272 3.16E-07 6.500418759 0.083892995 TPAAPAS(ph)PAAVPSEGSGGSTTGWR ddPTM_HeLa_A485_30min_R1 4 TPAAPASPAAVPSEGSGGSTTGWR 24 0 P07199 P07199 CENPB Major centromere autoantigen B 1 0 TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR ;;; 376.93 1.83E-156 2591370000 411548 627631 538544 396588 639786 528375 637583 646740 471399 528384 TRUE FALSE FALSE 503095.4328 701026.9858 737773.8363 418252.5982 576086.6594 556039.898 501358.1835 488126.001 566004.4554 396667.593 1.268304852 1.767290795 1.859929698 1.054415853 1.452315918 1.401777982 1.263925242 1.230566877 1.426898656 1 18.59757101 -6.9988706 0.111065912 0.668704236 2.000998968 0.296796079 0.219692941 12.50633893 1.108756528 5.451870397 6.748072575 1.00E-07 6.9988706 1.332294732 TPAAPAS(ph)PAAVPSEGSGGSTTGWR ddPTM_HeLa_A486_30min_R1 4 TPAAPASPAAVPSEGSGGSTTGWR 24 0 P07199 P07199 CENPB Major centromere autoantigen B 1 0 TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR;TPAAPAS(1)PAAVPSEGSGGSTTGWR ;;; 355.78 7.01E-142 2320170000 643430 658300 546081 191464 714000 587918 672900 623440 524026 673680 TRUE FALSE FALSE 598328.8797 606133.9105 757538.1878 445737.8681 624443.4622 515386.6547 504533.3028 481496.3216 569448.9956 504986.1431 1.184842174 1.200298105 1.500116782 0.882673464 1.236555638 1.020595638 0.999103262 0.953484226 1.127652716 1 18.94588428 -5.270105013 24.99980752 1.036247237 1.285606934 0.500417185 0.120539292 525.4256522 1515819.393 0.033224585 0.050148048 5.37E-06 5.270105013 0.249359697 TPADTGFAFPDWAYKPES(ph)SPGSR ddPTM_HeLa_A485_30min_R1 2 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 TPADTGFAFPDWAYKPES(0.639)S(0.359)PGS(0.002)R;TPADTGFAFPDWAYKPES(0.843)S(0.154)PGS(0.004)R ; 253.69 2.66E-61 1011340000 353833 296180 311936 484491 420585 323807 493850 374521 304056 579160 TRUE FALSE FALSE 432541.9301 330815.6746 427334.1071 510957.5165 378710.0806 340761.0338 388334.9131 282669.1375 365077.2502 434786.0706 0.994838518 0.760869993 0.98286062 1.175192931 0.87102625 0.783744137 0.893163188 0.65013384 0.83967099 1 18.7299462 -5.989499102 24.99901334 0.816566858 0.970702254 0.227575855 0.124660417 314.4230999 748527.7818 0.039461449 0.044702649 1.02E-06 5.989499102 0.154135396 TPADTGFAFPDWAYKPES(ph)SPGSR ddPTM_HeLa_A486_30min_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 TPADTGFAFPDWAYKPES(0.836)S(0.164)PGSR 210.56 1.58E-29 135270000 138430 150400 105150 49789 141920 147290 155060 169170 146530 188600 TRUE FALSE FALSE 128726.7719 138481.7563 145866.896 115911.3082 124119.0702 129118.8573 116262.3479 130653.684 159231.3384 141373.3324 0.910544936 0.979546523 1.031785086 0.81989514 0.877952497 0.91331834 0.822378209 0.92417489 1.126318066 1 17.10915048 -7.68607098 7.425287799 1.062083724 0.908800133 0.457762776 0.066778129 0.194171561 15.89134148 0.048304111 0.017859427 2.06E-08 7.68607098 -0.153283591 TPADTGFAFPDWAYKPESS(ph)PGSR ddPTM_HeLa_A485_30min_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 TPADTGFAFPDWAYKPES(0.204)S(0.794)PGS(0.002)R 218.67 2.91E-38 926280000 442200 413490 412570 635320 559460 462220 641380 462480 409200 695620 TRUE FALSE FALSE 540565.8644 461844.0586 565196.8115 670025.9229 503758.198 486421.1245 504343.9234 349056.0549 491322.6866 522214.7359 1.035140963 0.884394918 1.082307282 1.283046756 0.964657187 0.931458059 0.965778805 0.668414793 0.940844164 1 18.99428364 -6.401790892 1.902453683 0.866125069 1.058403963 0.265956692 0.12594835 0.449000961 3.216952606 0.056882828 0.047185842 3.96E-07 6.401790892 0.192278894 TPADTGFAFPDWAYKPESS(ph)PGSR ddPTM_HeLa_A486_30min_R1 2 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 TPADTGFAFPDWAYKPES(0.04)S(0.959)PGSR;TPADTGFAFPDWAYKPES(0.025)S(0.975)PGSR ; 281.65 2.42E-75 2581900000 962350 1141080 666500 337750 1047110 1073810 1190900 1163360 1024790 1236350 TRUE FALSE FALSE 894894.2346 1050656.665 924586.6495 786299.0689 915771.6999 941334.2399 892924.2239 898488.324 1113619.622 926759.9127 0.965616037 1.133688079 0.997654988 0.848438801 0.988143409 1.015726109 0.963490341 0.969494161 1.20162688 1 19.82183612 -7.728932036 24.99958013 1.10081377 0.986463213 0.252208638 0.079553336 233.5173845 179585.6856 0.054411243 0.020562204 1.87E-08 7.728932036 -0.114350556 TPAEGRDS(ph)PTREPGALPCACGQLPDLEDELSLLDPLPR ddPTM_HeLa_A485_30min_R1 2 TPAEGRDSPTREPGALPCACGQLPDLEDELSLLDPLPR 38 2 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 0 T(0.005)PAEGRDS(0.864)PT(0.131)REPGALPCACGQLPDLEDELSLLDPLPR;T(0.054)PAEGRDS(0.734)PT(0.212)REPGALPCACGQLPDLEDELSLLDPLPR ; 211.91 1.72E-30 57235000 4206.7 6995.5 6569.3 5225.9 7912.3 5233.7 6992.3 9970.9 6467.6 6821.2 TRUE FALSE FALSE 5142.465902 7813.562872 8999.557441 5511.377684 7124.52363 5507.728439 5498.337983 7525.521141 7765.587996 5120.800375 1.004230887 1.525847973 1.757451332 1.076272708 1.39129103 1.075560076 1.073726289 1.469598616 1.516479344 1 12.3221536 -5.297456864 24.97111008 1.242456707 1.438844461 0.122902255 0.242802263 1255.793825 870645.9231 0.069917118 0.10370828 5.04E-06 5.297456864 0.196387755 TPALIALRYQLQRGVVVLAKSYNEQR ddPTM_HeLa_A486_30min_R1 1 TPALIALRYQLQRGVVVLAKSYNEQR 26 3 P52895;B4DK69;Q04828;H0Y804;A0A0A0MSS8;P42330;S4R3Z2;P42330-2 P52895;Q04828;A0A0A0MSS8 AKR1C2;AKR1C1;AKR1C3 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C3 0 0 48.867 0.029231 6279300 9571.3 7368.9 6522.8 4402.8 11035 7913.1 8252.2 9948.2 5428.2 9596.7 FALSE FALSE TRUE 8900.401296 6784.961527 9048.602847 10249.94091 9650.887403 6936.862177 6187.412277 7683.212028 5898.720747 7193.623856 1.237262536 0.943191035 1.257864329 1.424864729 1.341589107 0.964307047 0.860124522 1.068058628 0.819992936 1 12.81250301 -6.318590411 7.710232834 0.940497616 1.23536447 0.560786961 0.132039325 0.258799847 31.60703465 0.050467831 0.044557828 4.80E-07 6.318590411 0.294866854 TPAPPEPGS(ph)PAPGEGPSGR ddPTM_HeLa_A485_30min_R1 2 TPAPPEPGSPAPGEGPSGR 19 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 TPAPPEPGS(1)PAPGEGPSGR;TPAPPEPGS(1)PAPGEGPSGR ; 237.09 1.68E-45 1306850000 606780 698430 575280 684400 754830 780990 880180 903330 610000 957960 TRUE FALSE FALSE 741756.1176 780105.313 788100.0114 721787.039 679676.4748 821881.4288 692122.3526 681786.9011 732421.4047 719158.2019 1.031422732 1.084747849 1.095864595 1.003655436 0.945100081 1.14283815 0.962406256 0.94803466 1.018442678 1 19.45594965 -5.701502786 0.608070607 0.988834217 1.075646546 0.163399255 0.05773035 1.814842804 1.374431324 0.041602965 0.087807126 1.99E-06 5.701502786 0.086812328 TPAPPEPGS(ph)PAPGEGPSGR ddPTM_HeLa_A486_30min_R1 2 TPAPPEPGSPAPGEGPSGR 19 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 TPAPPEPGS(1)PAPGEGPSGR;TPAPPEPGS(1)PAPGEGPSGR ; 149.19 1.65E-08 1198530000 621080 639870 442310 218450 650620 612040 678170 686250 558760 742210 TRUE FALSE FALSE 577545.4993 589164.3708 613584.2775 508562.6399 569013.1728 536532.7276 508484.693 530005.8557 607193.7667 556355.785 1.038086625 1.058970513 1.102863121 0.914096076 1.022750528 0.964369819 0.913955973 0.952638348 1.091376747 1 19.08564824 -5.251381882 24.9888233 0.976303213 1.065873129 0.371300971 0.051583086 724.6158657 1800374.498 0.014039204 0.023961922 5.61E-06 5.251381882 0.089569916 TPAQFDADELR ddPTM_HeLa_A485_30min_R1 1 TPAQFDADELR 11 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 0 111.86 0.0064505 34404000 17514 17314 21681 20828 27204 19059 23537 24213 16839 31289 FALSE FALSE TRUE 21409.92888 19338.72169 29701.70412 21965.7809 24495.47424 20056.89977 18508.12767 18274.72379 20218.43284 23489.22813 0.911478604 0.82330171 1.264481913 0.935142729 1.04283862 0.853876494 0.787941075 0.77800444 0.860753394 1 14.51971169 -6.325175141 6.400789976 0.836772357 0.997329453 0.239731958 0.121746419 0.320395372 25.90796786 0.043335662 0.038261695 4.73E-07 6.325175141 0.160557096 TPAQYDASELK ddPTM_HeLa_A485_30min_R1 2 TPAQYDASELK 11 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 177.57 1.13E-08 86820000 58378 52118 34893 78209 60847 71750 106153 97185 60093 133353 FALSE FALSE TRUE 71363.9847 58212.74673 47801.37272 82481.35963 54788.85903 75506.71905 83472.54436 73350.22637 72153.11389 100110.5513 0.71285178 0.581484629 0.47748586 0.823902761 0.547283561 0.754233376 0.833803663 0.732692263 0.720734358 1 16.61123451 -11.23421012 0.123431027 1.539338169 0.484977415 0.515804983 0.101157746 49.96488358 0.817853484 8.683065019 1.106375772 5.83E-12 11.23421012 -1.054360754 TPARPFGS(ph)VGR ddPTM_HeLa_A485_30min_R1 4 TPARPFGSVGR 11 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 TPARPFGS(1)VGR;TPARPFGS(1)VGR;TPARPFGS(1)VGR;TPARPFGS(1)VGR ;;; 134.24 1.37E-05 880350000 351630 409875 403942 347758 426085 308540 432670 410444 341154 443196 TRUE FALSE FALSE 429848.8804 457806.3158 553376.9552 366755.139 383662.4813 324694.6773 340226.5199 309781.9654 409620.4786 332715.3936 1.291941667 1.375969746 1.663214164 1.102308898 1.153125129 0.975893161 1.022575229 0.931071935 1.231143754 1 18.34392909 -5.398406751 6.482324996 1.050932808 1.435536265 0.685764291 0.119485534 0.1362101 6.6192163 0.033926985 0.050494988 4.00E-06 5.398406751 0.384603458 TPARPFGS(ph)VGR ddPTM_HeLa_A486_30min_R1 4 TPARPFGSVGR 11 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 TPARPFGS(1)VGR;TPARPFGS(1)VGR;TPARPFGS(1)VGR;TPARPFGS(1)VGR ;;; 127.71 2.56E-05 1016000000 567340 632950 498480 166145 552190 547530 580820 584380 515590 552900 TRUE FALSE FALSE 527572.3957 582792.7368 691504.8058 386793.9565 482929.1812 479981.3155 435492.6927 451329.4309 560281.7563 414450.2412 1.272945081 1.406182646 1.668486918 0.933269951 1.165228375 1.158115662 1.050771961 1.088983395 1.351867367 1 18.66083938 -5.266073152 24.99998203 1.112825399 1.444902658 0.560922615 0.138703205 288.0658701 1554165.971 0.038433614 0.059202431 5.42E-06 5.266073152 0.332077259 TPAS(ph)PHFR ddPTM_HeLa_A485_30min_R1 4 TPASPHFR 8 0 P29590-2 P29590-2 PML Protein PML 1 0 T(0.002)PAS(0.998)PHFR;T(0.004)PAS(0.996)PHFR;T(0.001)PAS(0.999)PHFR;TPAS(1)PHFR ;;; 94.692 0.002303 1134870000 238271 359123 368128 221450 386966 335371 402093 404261 292413 314783 TRUE FALSE FALSE 291273.5619 401119.3109 504313.8663 233547.2528 348438.3063 352930.507 316182.5458 305115.3559 351097.6069 236313.3913 1.232573238 1.697404065 2.134089243 0.988294618 1.474475503 1.493485008 1.337979808 1.291147126 1.485728782 1 17.85034186 -12.11673374 0.115060095 4.64E-10 1.765350578 0.208509381 0.284185776 145.7570171 1.732884301 39.48422314 3.62995905 7.64E-13 12.11673374 1.765350578 TPAS(ph)PHFR ddPTM_HeLa_A486_30min_R1 2 TPASPHFR 8 0 P29590-2 P29590-2 PML Protein PML 1 0 TPAS(1)PHFR;TPAS(1)PHFR ; 111.06 0.00086177 899640000 228900 256310 216240 80967 272260 225160 280790 271160 198049 271270 TRUE FALSE FALSE 212855.292 235999.0621 299973.9191 188495.2678 238110.6121 197382.0485 210533.3721 209422.7874 215216.0468 203342.2263 1.046783523 1.160600365 1.475217049 0.926985365 1.170984583 0.970688932 1.035364744 1.029903091 1.058393284 1 17.63355031 -5.298682557 24.99884452 1.032662564 1.220840755 0.383638519 0.115981653 591.5821845 397088.22 0.032272655 0.047869651 5.03E-06 5.298682557 0.188178191 TPASKS(ph)PSEGQTATTSPR ddPTM_HeLa_A485_30min_R1 2 TPASKSPSEGQTATTSPR 18 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 TPAS(0.003)KS(0.996)PS(0.001)EGQTATTSPR;TPASKS(0.997)PS(0.003)EGQTATTSPR ; 183.25 4.23E-18 321450000 157674 123481 119247 206616 194298 137389 190066 167591 144231 277850 TRUE FALSE FALSE 192748.0373 137921.0288 163361.4276 217902.9089 174953.0089 144582.4756 149456.8464 126489.0445 173176.8387 208587.1085 0.924064957 0.661215498 0.783180844 1.044661439 0.838752741 0.693151541 0.716520055 0.606408735 0.830237497 1 17.67029047 -6.195794008 8.347504286 0.74145266 0.847227316 0.065309947 0.134001344 0.794255821 94.32932599 0.044419844 0.044399888 6.37E-07 6.195794008 0.105774655 TPASKS(ph)PSEGQTATTSPR ddPTM_HeLa_A486_30min_R1 2 TPASKSPSEGQTATTSPR 18 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 TPAS(0.002)KS(0.994)PS(0.004)EGQTATTSPR;TPAS(0.001)KS(0.999)PSEGQTATTSPR ; 209.24 7.07E-26 362080000 176585 203404 113088 83623 197441 222310 275950 265160 183579 252650 TRUE FALSE FALSE 164207.3034 187285.5263 156878.7022 194678.5701 172676.1087 194883.6525 206904.3913 204788.8564 199491.7755 189384.7955 0.867056423 0.988915323 0.828359541 1.027952479 0.911773874 1.029035367 1.092507932 1.081337368 1.053367431 1 17.53096099 -6.377342272 3.744513607 1.063555048 0.928525169 0.547373167 0.057582055 0.178169635 4.475896226 0.020149505 0.017532369 4.19E-07 6.377342272 -0.135029879 TPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_HeLa_A485_30min_R1 3 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 TPASTPVSGT(1)PQAS(1)PMIER;TPASTPVS(0.008)GT(0.992)PQAS(1)PMIER;TPASTPVS(0.004)GT(0.996)PQAS(1)PMIER ;; 259.9 1.05E-57 1749360000 803110 1023510 955940 817140 1065670 949660 1132190 973730 920360 1192270 TRUE FALSE FALSE 981759.0488 1143200.591 1309581.986 861778.2891 959568.153 999382.7291 890288.3574 734921.1908 1105067.81 895059.0311 1.096865139 1.277234854 1.463123593 0.962817266 1.072072478 1.116555104 0.99466999 0.821086839 1.234631205 1 19.77162331 -5.279606189 24.99708078 1.025411786 1.278890578 0.438050957 0.129843177 722.6828575 994392.005 0.03645663 0.054192533 5.25E-06 5.279606189 0.253478792 TPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_HeLa_A486_30min_R1 3 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 TPASTPVS(0.014)GT(0.986)PQAS(1)PMIER;TPASTPVS(0.005)GT(0.995)PQAS(1)PMIER;TPASTPVS(0.058)GT(0.942)PQAS(1)PMIER ;; 198.35 5.06E-25 1155100000 842460 899220 742590 270154 972500 799800 875300 890860 810310 957050 TRUE FALSE FALSE 783407.9045 827962.5323 1030140.735 628932.1648 850519.9818 701128.8078 656290.682 688030.6253 880548.3232 717398.4507 1.092012261 1.154118094 1.435939448 0.876684588 1.185561498 0.97732133 0.914820323 0.959063439 1.227418769 1 19.4524151 -5.274764479 24.98871967 1.019140692 1.220032771 0.339247875 0.132410861 883.3439567 1656543.54 0.037039094 0.055297307 5.31E-06 5.274764479 0.200892079 TPASTPVSGTPQAS(ph)PMIER ddPTM_HeLa_A485_30min_R1 2 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 TPASTPVSGTPQAS(1)PMIER;TPASTPVSGTPQAS(1)PMIER ; 254.02 6.22E-58 465590000 146632 204296 166387 139032 169190 158710 190645 186855 177095 278180 TRUE FALSE FALSE 179249.7825 228186.6401 227940.4752 146626.9661 152344.8495 167019.8102 149912.1383 141028.5183 212636.3421 208834.8455 0.858332727 1.092665544 1.09148679 0.702119255 0.729499185 0.799769836 0.717850213 0.675311239 1.018203363 1 17.67200293 -5.25940226 24.9935994 0.785445405 1.022012078 0.348785703 0.127983046 172.3795518 2114925.149 0.034126063 0.055552772 5.50E-06 5.25940226 0.236566674 TPASTPVSGTPQAS(ph)PMIER ddPTM_HeLa_A486_30min_R1 2 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 TPASTPVSGTPQAS(1)PMIER;TPASTPVSGTPQAS(1)PMIER ; 264.01 2.55E-58 428450000 228290 233640 203707 72178 254980 213178 206630 209551 229150 238210 TRUE FALSE FALSE 212288.0499 215125.5155 282587.8059 168034.0317 222998.0308 186878.2658 154928.9885 161840.8118 249012.9065 178560.6655 1.188884737 1.204775502 1.5825871 0.941047297 1.248864245 1.046581369 0.867654632 0.906363175 1.394556331 1 17.44605478 -5.285727004 24.9739979 1.05352769 1.313351842 0.314775013 0.180553865 921.0263894 947052.5884 0.051150734 0.075910246 5.18E-06 5.285727004 0.259824153 TPCEEILVK(ac)HVGSR ddPTM_HeLa_A486_30min_R1 1 TPCEEILVKHVGSR 14 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 1 TPCEEILVK(1)HVGSR 104.41 0.0010923 9979700 9275.7 10372 11414 2273.2 14935 9956 11482 12347 10945 9702.9 FALSE TRUE FALSE 8625.52133 9550.084946 15833.80648 5292.124481 13061.71304 8727.729945 8609.082156 9535.857633 11893.72141 7273.230685 1.185927094 1.313045792 2.176997701 0.727616751 1.795861235 1.199979806 1.183666864 1.311089672 1.635273502 1 12.82838062 TPDGNKS(ph)PAPKPSDLRPGDVSSK ddPTM_HeLa_A485_30min_R1 3 TPDGNKSPAPKPSDLRPGDVSSK 23 3 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 T(0.005)PDGNKS(0.995)PAPKPSDLRPGDVSSK;TPDGNKS(1)PAPKPSDLRPGDVSSK;T(0.014)PDGNKS(0.986)PAPKPSDLRPGDVSSK ;; 144.44 2.06E-09 1812580000 3072330 1273680 789000 5939440 2358930 1999020 3863730 2731860 1743730 7782600 TRUE FALSE FALSE 3755759.209 1422625.796 1080883.933 6263896.568 2124066.646 2103685.596 3038212.522 2061867.052 2093680.617 5842541.048 0.642829751 0.243494361 0.185002369 1.072118538 0.363551857 0.360063469 0.520015606 0.352905873 0.358351032 1 22.47816453 -10.14863559 4.58573972 1.000067137 0.452710313 0.316950462 0.239828705 146234833.1 161815196.4 83730.92031 0.057920084 7.10E-11 10.14863559 -0.547356825 TPDGNKS(ph)PAPKPSDLRPGDVSSK ddPTM_HeLa_A486_30min_R1 3 TPDGNKSPAPKPSDLRPGDVSSK 23 3 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 T(0.001)PDGNKS(0.998)PAPKPS(0.001)DLRPGDVSSK;TPDGNKS(1)PAPKPSDLRPGDVSSK;T(0.001)PDGNKS(0.999)PAPKPSDLRPGDVSSK ;; 126.99 3.23E-06 2211740000 3317100 2777820 881530 2045740 2068250 4398400 5521200 4658300 2364560 6172600 TRUE FALSE FALSE 3084588.42 2557695.427 1222882.024 4762586.106 1808830.799 3855770.128 4139737.363 3597706.78 2569521.965 4626940.783 0.666658288 0.552783264 0.264296018 1.029316416 0.390934504 0.833330338 0.894702906 0.777556262 0.55533928 1 22.1416272 -5.816629928 0.982928122 0.795305144 0.53713179 0.17831539 0.22001199 1.000255809 2.084194687 0.103491736 0.151900998 1.53E-06 5.816629928 -0.258173354 TPDS(ph)PPTPAPLLLDLGIPVGQR ddPTM_HeLa_A485_30min_R1 3 TPDSPPTPAPLLLDLGIPVGQR 22 0 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 T(0.009)PDS(0.991)PPTPAPLLLDLGIPVGQR;T(0.03)PDS(0.97)PPTPAPLLLDLGIPVGQR;T(0.123)PDS(0.615)PPT(0.262)PAPLLLDLGIPVGQR ;; 149.95 1.29E-09 92241000 19080.7 11859.7 18404.7 19861.3 22192.4 20198.1 25544.5 29473 16785.1 28064 TRUE FALSE FALSE 23325.13589 13246.58875 25213.36441 20946.27253 19982.84673 21255.64128 20086.7089 22244.70054 20153.71561 21068.16128 1.10712727 0.628749162 1.196752013 0.994214552 0.948485559 1.008898736 0.953415375 1.055844421 0.956595848 1 14.36277679 -4.77504715 24.99999986 1.010838456 0.867938036 0.174592336 0.127097403 329.8194077 605941.7969 0.03072971 0.064518286 1.68E-05 4.77504715 -0.14290042 TPDS(ph)PPTPAPLLLDLGIPVGQR ddPTM_HeLa_A486_30min_R1 2 TPDSPPTPAPLLLDLGIPVGQR 22 0 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 T(0.171)PDS(0.802)PPT(0.026)PAPLLLDLGIPVGQR;T(0.002)PDS(0.998)PPTPAPLLLDLGIPVGQR ; 158.92 1.30E-10 69094000 9429.2 11698.2 4132.5 7243.5 10520.8 7455.6 11275.8 13011.1 12785.7 11759.7 TRUE FALSE FALSE 8768.261772 10771.19203 5732.714672 16863.23407 9201.183161 6535.803875 8454.475577 10048.75656 13893.97477 8814.994577 0.994698487 1.221917034 0.650336721 1.913016953 1.043810417 0.741441622 0.95910162 1.13996174 1.576175079 1 13.10574397 -7.541271873 24.84132615 1.311414624 1.080091203 0.054741356 0.346925955 690.72753 932860.9741 0.232574261 0.087937858 2.88E-08 7.541271873 -0.231323421 TPEAVQK(ac)LLEQGLR ddPTM_HeLa_A485_30min_R1 2 TPEAVQKLLEQGLR 14 1 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; TPEAVQK(1)LLEQGLR;TPEAVQK(1)LLEQGLR 133.04 0.00027731 30867000 56678 33797 48329 127656 83005 35269 69969 48481 48738 213011 FALSE TRUE FALSE 69285.82556 37749.26516 66207.90824 134629.524 74740.73075 37115.6303 55019.55156 36590.95873 58519.26955 159911.2779 0.433276667 0.236063808 0.414029011 0.841901371 0.46738874 0.232101393 0.344062985 0.228820376 0.365948358 1 17.28691216 -10.47601824 3.857553678 1.005753327 0.395739583 0.531351925 0.170185575 523386374.7 970825510.2 33380043.22 0.046529302 3.34E-11 10.47601824 -0.610013744 TPEDGDYS(ph)YEIIEK ddPTM_HeLa_A485_30min_R1 2 TPEDGDYSYEIIEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPEDGDYS(1)YEIIEK;TPEDGDYS(1)YEIIEK ; 246.18 1.41E-35 201288000 304060 251680 208395 318940 359720 278750 406480 387620 243645 434130 TRUE FALSE FALSE 371697.098 281111.7867 285488.9825 336362.8846 323905.0137 293344.919 319632.2274 292555.5872 292542.3167 325909.3806 1.140492174 0.862545859 0.875976574 1.032074879 0.993849926 0.900081239 0.980739575 0.897659302 0.897618584 1 18.31411135 -6.253054853 24.27487644 0.931668436 0.971411973 0.068498351 0.080076374 1491.741955 4318891.141 0.026778158 0.026321254 5.58E-07 6.253054853 0.039743537 TPEDGDYS(ph)YEIIEK ddPTM_HeLa_A486_30min_R1 3 TPEDGDYSYEIIEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPEDGDYS(1)YEIIEK;TPEDGDYS(1)YEIIEK;TPEDGDY(0.002)S(0.994)Y(0.003)EIIEK ;; 197.47 1.02E-21 365310000 487980 507400 277898 221206 492480 512210 617880 604060 395625 639030 TRUE FALSE FALSE 453775.1219 467191.7761 385507.548 514978.7471 430708.5662 449018.738 463279.8887 466528.7245 429918.0935 479012.7286 0.947313286 0.975322258 0.804796042 1.075083638 0.899158917 0.937383729 0.967155696 0.973938054 0.897508705 1 18.86970447 -10.53881147 3.250134772 1.001802213 0.943112333 0.06536676 0.065708194 39759842.25 36374390.35 596479.2319 0.015395847 2.89E-11 10.53881147 -0.058689881 TPEELDDS(ph)DFETEDFDVR ddPTM_HeLa_A485_30min_R1 10 TPEELDDSDFETEDFDVR 18 0 G3XAM7;P35221;P35221-2;P35221-3 G3XAM7 CTNNA1 Catenin alpha-1 1 0 TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(0.999)DFET(0.001)EDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR ;;;;;;;;; 418.9 4.21E-165 50447950000 1731740 2069064 1943307 1811745 2560491 2170471 2556497 2797419 1903010 2547350 TRUE FALSE FALSE 2116959.589 2311023.036 2662217.127 1910716.042 2305559.526 2284113.505 2010280.531 2111347.604 2284926.652 1912342.526 1.106998124 1.208477564 1.392123582 0.999149481 1.205620591 1.194406062 1.051213632 1.104063512 1.194831272 1 20.86690952 -12.85806958 0.107445277 0.579867796 1.272661694 0.204406102 0.100877125 199.0529119 1.847954472 19.91400371 1.483137311 1.39E-13 12.85806958 0.692793897 TPEELDDS(ph)DFETEDFDVR ddPTM_HeLa_A486_30min_R1 10 TPEELDDSDFETEDFDVR 18 0 G3XAM7;P35221;P35221-2;P35221-3 G3XAM7 CTNNA1 Catenin alpha-1 1 0 TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR ;;;;;;;;; 326.02 1.15E-90 57149870000 3751499.9 4524901.9 3904069.8 1514144.3 5420729.9 4133547.6 4452395.6 4601561.6 4108667.1 4362959 TRUE FALSE FALSE 3488539.13 4166332.194 5415830.181 3525004.451 4740811.41 3623592.524 3338359.128 3553886.475 4464809.672 3270445.668 1.066686159 1.27393408 1.655991486 1.077836114 1.449591857 1.107981264 1.020765812 1.086667334 1.365199158 1 21.64105582 -6.291370184 24.00432586 1.115579554 1.309993379 0.207629294 0.184160253 699.5453283 561028.4421 0.064414069 0.056817204 5.11E-07 6.291370184 0.194413825 TPEEREWR ddPTM_HeLa_A486_30min_R1 1 TPEEREWR 8 1 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59;E9PJG2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 0 0 70.919 0.020675 137550000 124710 148800 141290 43597 186700 122070 144620 145080 132170 136060 FALSE FALSE TRUE 115968.473 137008.5461 196001.2719 101496.0193 163282.3451 107010.2445 108434.5464 112048.4511 143626.602 101989.6904 1.137060742 1.343356819 1.921775339 0.995159598 1.600969122 1.049226094 1.063191249 1.098625269 1.408246279 1 16.6380638 -6.277765455 24.90595999 1.12623019 1.403069821 0.224913323 0.25594326 1243.203244 1896541.38 0.088601788 0.078359336 5.28E-07 6.277765455 0.276839631 TPEKLDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_HeLa_A485_30min_R1 2 TPEKLDNTPASPPRSPAEPNDIPIAK 26 2 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 2 0 TPEKLDNT(0.013)PAS(0.987)PPRS(1)PAEPNDIPIAK;TPEKLDNT(0.011)PAS(0.989)PPRS(1)PAEPNDIPIAK ; 161.8 8.22E-14 299250000 233350 232380 131985 263230 267440 298460 426080 455750 199598 400490 TRUE FALSE FALSE 285257.9025 259554.8196 180811.7439 277609.5884 240812.7346 314086.9041 335044.5272 343976.5979 239655.4878 300655.2135 0.94878748 0.863297252 0.601392345 0.92334866 0.800959783 1.04467473 1.114381232 1.144089916 0.7971107 1 18.19775045 -6.263357014 24.76504783 1.034952564 0.822299707 0.373558919 0.123794642 155.8230703 2012345.671 0.042762131 0.039631607 5.45E-07 6.263357014 -0.212652857 TPEKLDNTPAS(ph)PPRS(ph)PAEPNDIPIAK ddPTM_HeLa_A486_30min_R1 1 TPEKLDNTPASPPRSPAEPNDIPIAK 26 2 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 2 0 T(0.001)PEKLDNT(0.026)PAS(0.974)PPRS(1)PAEPNDIPIAK 91.873 0.0022862 384190000 453060 397290 163080 180450 382100 372540 479950 482740 269020 549300 TRUE FALSE FALSE 421302.8336 365807.2935 226228.9434 420096.7194 334173.4551 326579.8025 359861.4336 372830.6401 292338.8702 411751.7047 1.023196331 0.888417193 0.549430496 1.020267104 0.811589731 0.793147421 0.873976791 0.90547443 0.709988245 1 18.6514151 -10.72284556 6.45721515 1.002592828 0.840257835 0.112246621 0.133480817 0.004904088 0.000210491 0.127210543 0.030405276 1.89E-11 10.72284556 -0.162334993 TPEKLDNTPAS(ph)PPRSPAEPNDIPIAK ddPTM_HeLa_A486_30min_R1 1 TPEKLDNTPASPPRSPAEPNDIPIAK 26 2 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 T(0.003)PEKLDNT(0.239)PAS(0.748)PPRS(0.01)PAEPNDIPIAK 57.144 0.013044 237090000 74352 70514 36196 33767 73105 63461 97281 83250 42068 97351 TRUE FALSE FALSE 69140.30875 64926.21383 50212.06056 78611.28249 63935.48922 55631.82704 72940.26487 64295.79233 45714.48811 72973.67595 0.947469178 0.889721026 0.688084572 1.077255345 0.87614456 0.76235473 0.999542149 0.881082 0.626451765 1 16.15508851 -7.564331558 24.99987892 0.793406167 0.889139617 0.046813343 0.133491616 396.5684276 239160.883 0.085766487 0.032416744 2.73E-08 7.564331558 0.095733449 TPEPS(ph)SPVKEPPPVLAK ddPTM_HeLa_A485_30min_R1 1 TPEPSSPVKEPPPVLAK 17 1 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 TPEPS(0.5)S(0.5)PVKEPPPVLAK 117.74 3.79E-05 223180000 194090 137070 97781 285180 216770 143150 222610 205400 140540 358190 TRUE FALSE FALSE 237264.6509 153099.1441 133954.2609 300758.6613 195187.6177 150645.1126 175047.5549 155025.3279 168745.0889 268899.825 0.882353311 0.569353826 0.498156743 1.118478457 0.725874841 0.560227634 0.650976827 0.576517028 0.627538857 1 18.03670929 -11.0743697 2.644256955 1.493666898 0.686118174 0.2187631 0.175645933 64569751.76 35063052.1 191135904.2 0.045566028 8.43E-12 11.0743697 -0.807548724 TPEPSS(ph)PVKEPPPVLAK ddPTM_HeLa_A486_30min_R1 1 TPEPSSPVKEPPPVLAK 17 1 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 TPEPS(0.141)S(0.859)PVKEPPPVLAK 139.98 8.61E-07 201030000 210640 225310 97672 132410 193580 283370 337660 313550 164720 306240 TRUE FALSE FALSE 195875.2237 207455.615 135493.2141 308257.1716 169299.3913 248410.6905 253173.8966 242161.5097 178998.0622 229555.5107 0.853280425 0.903727444 0.59024161 1.342843701 0.737509593 1.082137779 1.102887471 1.054914818 0.779759378 1 17.80848354 -5.238157246 24.999991 1.011567057 0.794547641 0.265480307 0.176360373 1132.768124 1216347.421 0.045750586 0.079182036 5.78E-06 5.238157246 -0.217019415 TPEPSS(ph)PVKEPPPVLAKPK ddPTM_HeLa_A485_30min_R1 1 TPEPSSPVKEPPPVLAKPK 19 2 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 TPEPS(0.418)S(0.582)PVKEPPPVLAKPK 184.2 1.71E-18 2710600000 1880500 1265100 726040 2569600 1928800 1903400 3031400 3043100 1430800 3329400 TRUE FALSE FALSE 2298810.737 1413042.44 994632.409 2709970.741 1736761.9 2003059.081 2383716.626 2296774.954 1717948.436 2499441.853 0.919729633 0.565343194 0.397941808 1.084230361 0.694859893 0.801402552 0.953699572 0.918915137 0.687332827 1 21.25317453 -5.262223554 24.99999891 0.866258253 0.62143872 0.314074497 0.168371762 86.39533623 2754377.385 0.046242548 0.073380683 5.47E-06 5.262223554 -0.244819532 TPEPVVPTAPELRPS(ph)TSTDRPVTPKPTSR ddPTM_HeLa_A485_30min_R1 1 TPEPVVPTAPELRPSTSTDRPVTPKPTSR 29 3 Q14676;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 TPEPVVPTAPELRPS(0.21)T(0.21)S(0.21)T(0.21)DRPVT(0.145)PKPT(0.007)S(0.007)R 67.064 0.037179 1550000000 142310 138180 101100 181050 171880 142380 208920 261360 124760 207880 TRUE FALSE FALSE 173966.3685 154338.949 138501.0971 190940.3031 154767.0237 149834.7966 164282.5353 197261.0502 149798.1876 156059.3417 1.114744985 0.988976035 0.887489948 1.223510883 0.99171906 0.960114242 1.052692735 1.264013086 0.959879658 1 17.25173519 -7.009017701 24.89297164 1.098838396 1.025173677 0.020253826 0.113728151 1125.396784 3106605.291 0.048704231 0.030903943 9.79E-08 7.009017701 -0.073664719 TPEPVVPTAPELRPSTSTDRPVT(ph)PKPTSR ddPTM_HeLa_A485_30min_R1 4 TPEPVVPTAPELRPSTSTDRPVTPKPTSR 29 3 Q14676;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 TPEPVVPTAPELRPS(0.007)T(0.007)S(0.007)T(0.007)DRPVT(0.869)PKPT(0.052)S(0.052)R;TPEPVVPTAPELRPS(0.028)T(0.028)S(0.028)T(0.028)DRPVT(0.881)PKPT(0.004)S(0.004)R;TPEPVVPTAPELRPS(0.047)T(0.047)S(0.047)T(0.047)DRPVT(0.785)PKPT(0.014)S(0.014)R;TPEPVVPT(0.002)APELRPS(0.051)T(0.051)S(0.051)T(0.051)DRPVT(0.765)PKPT(0.013)S(0.013)R ;;; 110.09 8.58E-05 7393350000 2064034 2313445 1897461 2738570 3027100 2503931 3389920 3848550 2468638 4095090 TRUE FALSE FALSE 2523171.242 2583982.268 2599410.784 2888171.145 2725711.295 2635032.955 2665635.899 2904687.078 2964071.003 3074259.428 0.820741158 0.840521865 0.845540477 0.939468907 0.886623709 0.857127714 0.867082288 0.944841236 0.964157734 1 21.55180748 -1 0.050888676 1.234919754 0.255974976 0.710421836 0.031125684 288.3792699 1.10929273 4.962102315 22.04693097 0.1 1 -0.978944778 TPEPVVPTAPELRPSTSTDRPVT(ph)PKPTSR ddPTM_HeLa_A486_30min_R1 4 TPEPVVPTAPELRPSTSTDRPVTPKPTSR 29 3 Q14676;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 TPEPVVPTAPELRPS(0.009)T(0.009)S(0.009)T(0.009)DRPVT(0.837)PKPT(0.064)S(0.064)R;TPEPVVPTAPELRPS(0.098)T(0.098)S(0.098)T(0.098)DRPVT(0.543)PKPT(0.029)S(0.037)R;TPEPVVPTAPELRPS(0.008)T(0.008)S(0.008)T(0.008)DRPVT(0.949)PKPT(0.008)S(0.008)R;TPEPVVPTAPELRPS(0.027)T(0.027)S(0.027)T(0.027)DRPVT(0.875)PKPT(0.009)S(0.006)R ;;; 193.03 6.72E-21 7011890000 2408278 2070669 1354710 778400 2010373 2211179.8 2714600 2488314 1910479 3057519 TRUE FALSE FALSE 2239470.149 1906581.647 1879289.992 1812154.538 1758213.272 1938386.918 2035378.368 1921779.222 2076080.858 2291896.341 0.977125408 0.831879528 0.819971636 0.790679101 0.767143453 0.845756801 0.888076102 0.838510533 0.905835408 1 21.12811036 -8.215133196 1.00443745 1.000424663 0.836344495 0.432106599 0.054483207 0.81562448 1.65230403 0.054304751 0.017773235 6.09E-09 8.215133196 -0.164080168 TPESQPDT(ph)PPGTPLVSQDEKR ddPTM_HeLa_A485_30min_R1 2 TPESQPDTPPGTPLVSQDEKR 21 1 A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 A0A0D9SEV0 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 0 TPESQPDT(0.999)PPGT(0.001)PLVSQDEKR;TPESQPDT(0.998)PPGT(0.002)PLVSQDEKR ; 162.77 1.55E-13 4938600000 2775430 2606540 2309860 3553900 3217790 3104690 4255010 4052660 2633790 4758300 TRUE FALSE FALSE 3392814.828 2911352.179 3164373.335 3748040.558 2897415.529 3267246.768 3345892.353 3058738.781 3162367.494 3572143.38 0.949798053 0.815015488 0.885847235 1.049241354 0.811114007 0.914646032 0.936662389 0.856275478 0.885285712 1 21.76835856 -10.13751063 3.913451593 1.000041816 0.899425271 0.169184961 0.066159381 13852496.56 7184704.311 4685.565515 0.015655235 7.29E-11 10.13751063 -0.100616544 TPESQPDT(ph)PPGTPLVSQDEKR ddPTM_HeLa_A486_30min_R1 3 TPESQPDTPPGTPLVSQDEKR 21 1 A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 A0A0D9SEV0 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 0 TPESQPDT(0.994)PPGT(0.005)PLVSQDEKR;TPESQPDT(1)PPGTPLVSQDEKR;TPESQPDT(0.995)PPGT(0.005)PLVSQDEKR ;; 193.88 7.19E-20 4462260000 869680 954420 577230 340533 877690 1029100 1169890 1098920 777970 1206260 TRUE FALSE FALSE 808719.923 878788.2833 800748.9148 792778.0336 767601.9361 902140.1051 877171.1482 848719.9053 845405.066 904204.6446 0.894399214 0.971890919 0.885583722 0.876768371 0.848925009 0.997716734 0.970102458 0.938636967 0.934970939 1 19.7862898 -6.270039676 24.96246995 0.964563794 0.898163595 0.513913629 0.035247405 624.7611164 1813372.489 0.013209469 0.011830073 5.37E-07 6.270039676 -0.0664002 TPGDFSYAYQKPEET(ph)TRSPDEEDYDYESYEK ddPTM_HeLa_A486_30min_R1 1 TPGDFSYAYQKPEETTRSPDEEDYDYESYEK 31 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPGDFSYAYQKPEET(0.361)T(0.361)RS(0.279)PDEEDYDYESYEK 148.28 1.40E-09 262300000 142240 152090 71623 73259 143960 178350 199590 195400 123730 214270 TRUE FALSE FALSE 132269.7105 140037.8345 99357.34373 170550.6543 125903.1944 156346.9903 149650.471 150911.6856 134455.016 160615.3973 0.823518247 0.871883 0.618604103 1.061857438 0.78387998 0.973424671 0.931731786 0.939584175 0.837124076 1 17.29325068 -5.267879021 24.9998591 0.925476118 0.781389905 0.371979801 0.095398899 573.7533134 2227415.907 0.025446438 0.03879616 5.40E-06 5.267879021 -0.144086213 TPGDFSYAYQKPEETTRS(ph)PDEEDYDYESYEK ddPTM_HeLa_A485_30min_R1 2 TPGDFSYAYQKPEETTRSPDEEDYDYESYEK 31 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPGDFSYAYQKPEET(0.099)T(0.099)RS(0.803)PDEEDYDYESYEK;TPGDFSYAYQKPEET(0.032)T(0.158)RS(0.809)PDEEDYDYESYEK ; 340.42 2.63E-128 9716800000 2736340 1726400 1644180 3494900 2605950 2481690 3509900 2884410 2277910 4652900 TRUE FALSE FALSE 3345029.393 1928287.462 2252430.602 3685817.537 2346492.468 2611627.451 2759981.192 2177003.925 2735065.643 3493017.66 0.957633118 0.552040571 0.644838023 1.055195792 0.671766563 0.747670841 0.790142353 0.623244466 0.783009394 1 21.73604251 -10.25436776 2.340076127 1.004458577 0.751809359 0.198049458 0.145311009 628733.9007 633745.7256 19988.04191 0.037220664 5.57E-11 10.25436776 -0.252649218 TPGDFSYAYQKPEETTRS(ph)PDEEDYDYESYEK ddPTM_HeLa_A486_30min_R1 4 TPGDFSYAYQKPEETTRSPDEEDYDYESYEK 31 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPGDFSYAYQKPEET(0.126)T(0.126)RS(0.748)PDEEDYDYESYEK;TPGDFSYAYQKPEET(0.092)T(0.021)RS(0.886)PDEEDYDYESYEK;TPGDFSYAYQKPEET(0.022)T(0.135)RS(0.844)PDEEDYDYESYEK;TPGDFSYAYQKPEET(0.02)T(0.02)RS(0.961)PDEEDYDYESYEK ;;; 352.53 4.20E-148 22348400000 3234930 2991710 1585070 1636830 2713060 3591280 4320510 3961890 2756680 4640670 TRUE FALSE FALSE 3008178.112 2754636.004 2198851.554 3810622.961 2372762.717 3148224.387 3239472.7 3059854.134 2995631.242 3478616.026 0.864762908 0.791876995 0.632105279 1.095442248 0.682099633 0.905022102 0.931253313 0.879618248 0.861156052 1 21.73008201 -10.20063526 0.071685931 1.34146935 0.60031558 0.161535042 0.119594418 196.7127566 2.55932562 19.88420204 8.110031115 6.30E-11 10.20063526 -0.74115377 TPGHPPPPEIPSELGACDFEKPES(ph)PR ddPTM_HeLa_A485_30min_R1 4 TPGHPPPPEIPSELGACDFEKPESPR 26 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 TPGHPPPPEIPS(0.018)ELGACDFEKPES(0.982)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPS(0.012)ELGACDFEKPES(0.988)PR ;;; 191.99 8.07E-21 3544710000 1526753 1306506 1108560 2263370 1938464 1375658 2288970 2173810 1231972 2948820 TRUE FALSE FALSE 1866373.938 1459290.512 1518662.475 2387012.172 1745463.718 1447685.326 1799912.86 1640679.689 1479217.48 2213733.443 0.84308883 0.659198837 0.686018671 1.078274432 0.788470592 0.653956478 0.813066662 0.741136967 0.668200358 1 21.07805009 -11.30891391 2.210510632 2.103399439 0.771010534 0.244907549 0.121065873 16762630.5 1873882.388 92684312.78 0.034227867 4.91E-12 11.30891391 -1.332388905 TPGHPPPPEIPSELGACDFEKPES(ph)PR ddPTM_HeLa_A486_30min_R1 5 TPGHPPPPEIPSELGACDFEKPESPR 26 1 A0A669KBG8;A0A669KB10;Q92538;Q92538-3;Q92538-2 A0A669KBG8;Q92538-3 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR;TPGHPPPPEIPSELGACDFEKPES(1)PR ;;;; 188.26 1.41E-20 5285070000 1936820 2005430 1082200 960143 1726040 2050250 2714860 2420300 1561770 2841160 TRUE FALSE FALSE 1801058.92 1846512.423 1501256.822 2235261.427 1509543.969 1797311 2035573.313 1869250.525 1697145.481 2129715.043 0.845680705 0.867023234 0.704909714 1.049558923 0.708800914 0.843920883 0.955796091 0.877699827 0.796888526 1 21.02222898 -14 0.251830369 1.899014758 0.838996491 0.169688459 0.098216938 333.3190415 3.303758799 154.5570964 0.135509788 1.00E-14 14 -1.060018267 TPGLRT(ph)PAAGER ddPTM_HeLa_A485_30min_R1 1 TPGLRTPAAGER 12 1 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 T(0.117)PGLRT(0.883)PAAGER 80.738 0.006836 198520000 63498 84552 90540 80191 130470 85576 103630 109290 91619 122500 TRUE FALSE FALSE 77622.91103 94439.6209 124034.5137 84571.63128 117479.9487 90056.62703 81488.60392 82486.45614 110006.0929 91963.00445 0.844066715 1.026930573 1.3487436 0.919626667 1.277469667 0.97927017 0.886102019 0.896952602 1.196199424 1 16.48876598 -6.439063723 25 0.978553477 1.090127746 0.071488589 0.160818346 215.9004439 64394.95664 0.056230399 0.049590533 3.64E-07 6.439063723 0.111574269 TPGPGAQSALR ddPTM_HeLa_A485_30min_R1 1 TPGPGAQSALR 11 0 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 0 98.254 0.01666 29546000 5207.3 5611.4 5893.7 7166.1 8817.7 5407.9 9434.2 8202.8 6439.3 10699 FALSE FALSE TRUE 6365.64592 6267.604417 8074.024887 7557.565897 7939.778827 5691.049282 7418.5061 6191.050439 7731.608445 8031.936201 0.792541893 0.780335434 1.005240167 0.940939483 0.988526132 0.7085526 0.923626124 0.770804235 0.962608299 1 12.97153209 -7.982559701 22.81325677 1.000000062 0.869135264 0.200205793 0.09492711 113.2399805 148125.1614 0.093035948 0.024021779 1.04E-08 7.982559701 -0.130864798 TPGRQS(ph)PGPGHR ddPTM_HeLa_A485_30min_R1 2 TPGRQSPGPGHR 12 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 T(0.068)PGRQS(0.932)PGPGHR;T(0.107)PGRQS(0.893)PGPGHR ; 46.39 0.030151 144870000 83688 110850 121756 80059 128462 99490 116447 106721 103618 117288 TRUE FALSE FALSE 102304.1069 123812.9432 166798.6111 84432.42045 115671.8722 104699.1426 91567.14717 80547.50742 124413.1822 88050.26013 1.161883074 1.406162152 1.894356824 0.958911653 1.313702788 1.189083853 1.039941813 0.914790113 1.412979155 1 16.42603965 -5.291881324 24.99410211 1.122739445 1.47933712 0.365631562 0.222594648 730.5840676 599838.3028 0.062545227 0.092782667 5.11E-06 5.291881324 0.356597674 TPGRQS(ph)PGPGHR ddPTM_HeLa_A486_30min_R1 4 TPGRQSPGPGHR 12 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 T(0.012)PGRQS(0.988)PGPGHR;T(0.022)PGRQS(0.978)PGPGHR;T(0.126)PGRQS(0.874)PGPGHR;T(0.113)PGRQS(0.887)PGPGHR ;;; 60.209 0.014421 190527000 188387 184074.2 169905.4 69049.4 196674 176887 167266 178773 162440 189247 TRUE FALSE FALSE 175182.0441 169487.49 235697.3211 160750.4928 172005.313 155064.4804 125414.2776 138070.2905 176520.43 141858.3194 1.234908498 1.194765952 1.66149805 1.133176351 1.212514809 1.093094018 0.884081231 0.973297097 1.244343164 1 17.11409124 -5.937057691 1.650394055 1.026436148 1.336963564 0.413453613 0.155052119 0.365307451 2.038701083 0.060296684 0.070172113 1.16E-06 5.937057691 0.310527417 TPGRQS(ph)PGPGHRS(ph)PDSGHVAK ddPTM_HeLa_A485_30min_R1 3 TPGRQSPGPGHRSPDSGHVAK 21 2 O15169-2;O15169 O15169-2 AXIN1 Axin-1 2 0 T(0.125)PGRQS(0.875)PGPGHRS(0.995)PDS(0.004)GHVAK;T(0.114)PGRQS(0.89)PGPGHRS(0.971)PDS(0.026)GHVAK;T(0.081)PGRQS(0.919)PGPGHRS(0.649)PDS(0.351)GHVAK ;; 109.45 5.85E-05 207518000 69791 146399 157652 55901 228549 149784 171038 219995 141709 102757 TRUE FALSE FALSE 85315.76717 163519.0895 215974.0352 58954.73008 205793.8591 157626.4586 134494.334 166040.8813 170148.6965 77141.571 1.105963569 2.119727242 2.799710097 0.764240724 2.66774265 2.043340012 1.743474139 2.15241768 2.205668024 1 16.23522091 -9.819086077 9.945419541 0.99999998 1.973456028 0.187765919 0.595365007 0 0 0.548332063 0.13299006 1.52E-10 9.819086077 0.973456048 TPGRQS(ph)PGPGHRS(ph)PDSGHVAK ddPTM_HeLa_A486_30min_R1 5 TPGRQSPGPGHRSPDSGHVAK 21 2 O15169-2;O15169 O15169-2 AXIN1 Axin-1 2 0 T(0.48)PGRQS(0.652)PGPGHRS(0.866)PDS(0.002)GHVAK;T(0.349)PGRQS(0.654)PGPGHRS(0.912)PDS(0.085)GHVAK;T(0.105)PGRQS(0.895)PGPGHRS(0.968)PDS(0.032)GHVAK;T(0.367)PGRQS(0.638)PGPGHRS(0.994)PDS(0.002)GHVAK;T(0.164)PGRQS(0.836)PGPGHRS(0.661)PDS(0.339)GHVAK ;;;; 90.37 0.00071364 212987000 176972 164611 190064 27357.4 285415 152664 206034 218773 147919 144250 TRUE FALSE FALSE 164567.1767 151566.6249 263661.8709 63689.40977 249615.5893 133829.8679 154482.114 168963.1637 160740.738 108128.8611 1.521954222 1.401722198 2.438404217 0.58901397 2.30850105 1.237688685 1.428685297 1.562609298 1.486566458 1 16.72239212 -11.8833015 0.220786435 9.51E-12 1.64809879 0.109199594 0.490628184 118.9947186 2.743649504 56.74910683 0.934345636 1.31E-12 11.8833015 1.64809879 TPGT(ph)PGT(ph)PSY(ph)PR ddPTM_HeLa_A485_30min_R1 1 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 3 0 T(0.37)PGT(0.629)PGT(0.724)PS(0.606)Y(0.671)PR 42.843 0.01173 0 9841.4 20271 16656 16211 21654 13429 16591 16423 20783 12298 TRUE FALSE FALSE 12030.58548 22641.51712 22817.74751 17096.56588 19498.05173 14132.12167 13046.19731 12395.2335 24953.95747 9232.334928 1.3030924 2.452415049 2.471503438 1.851813871 2.111930717 1.530720212 1.413098357 1.342589236 2.702886936 1 13.17247985 -6.258330085 23.93852558 1.607723229 2.074888846 0.153662705 0.512781526 286.7632845 2207801.704 0.169671563 0.162676536 5.52E-07 6.258330085 0.467165617 TPGT(ph)PGT(ph)PSYPR ddPTM_HeLa_A485_30min_R1 2 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(0.005)PGT(0.995)PGT(1)PSYPR;T(0.004)PGT(0.996)PGT(1)PSYPR ; 195.16 1.29E-13 1308050000 672660 853650 746220 779440 1052970 767820 990550 1028890 702640 857530 TRUE FALSE FALSE 822290.8964 953476.9417 1022277.831 822018.8336 948132.6096 808021.8679 778910.9005 776553.1143 843653.403 643763.5527 1.277318191 1.481098049 1.587970966 1.276895578 1.472796348 1.255153176 1.209933208 1.206270705 1.310501968 1 19.29617137 -6.400912007 3.747582412 1.201481706 1.424080282 0.494470569 0.113547878 0.220661207 5.513978872 0.041346978 0.035679604 3.97E-07 6.400912007 0.222598577 TPGT(ph)PGT(ph)PSYPR ddPTM_HeLa_A486_30min_R1 2 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(0.036)PGT(0.964)PGT(1)PSYPR;T(0.078)PGT(0.922)PGT(1)PSYPR ; 157.5 4.70E-08 1266620000 1522690 1659390 1340950 498110 1860800 1547100 1689480 1710410 1412240 1769720 TRUE FALSE FALSE 1415957.294 1527893.893 1860201.752 1159625.253 1627401.113 1356234.532 1266754.235 1320986.981 1534654.1 1326570.593 1.06738179 1.151762221 1.402263673 0.874152691 1.226773095 1.022361372 0.954909027 0.995790942 1.156858224 1 20.33927002 -5.269535735 24.99992625 1.037182112 1.201598531 0.300602655 0.121529538 775.9232856 2395895.102 0.033773031 0.051065153 5.38E-06 5.269535735 0.164416419 TPGT(ph)PGTPSYPR ddPTM_HeLa_A485_30min_R1 4 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 TPGT(1)PGTPSYPR;TPGT(1)PGTPSYPR;T(0.002)PGT(0.998)PGTPSYPR;T(0.031)PGT(0.969)PGTPSYPR ;;; 206.21 1.45E-16 4340170000 1779980 2406950 2082400 2041870 2977900 2233340 2948760 3069450 2077020 2368380 TRUE FALSE FALSE 2175930.41 2688421.865 2852766.416 2153412.188 2681409.82 2350274.229 2318733.337 2316662.575 2493858.862 1777986.453 1.223817204 1.512059814 1.604492774 1.211152191 1.508116002 1.321874093 1.304134423 1.302969756 1.40263097 1 20.7618129 -12.64963602 0.222029574 5.45E-09 1.435520278 0.461232732 0.122916221 68.97368437 1.184521512 31.44208632 0.235110104 2.24E-13 12.64963602 1.435520273 TPGT(ph)PGTPSYPR ddPTM_HeLa_A486_30min_R1 3 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 T(0.002)PGT(0.998)PGTPSYPR;T(0.004)PGT(0.995)PGT(0.001)PSYPR;T(0.012)PGT(0.988)PGTPSYPR ;; 148.13 7.57E-07 2400370000 1982460 2209690 1880810 632320 2380280 1930740 2206710 2286880 1628390 2024640 TRUE FALSE FALSE 1843499.791 2034586.117 2609110.002 1472072.916 2081723.087 1692544.929 1654567.818 1766207.346 1769540.156 1517656.966 1.214701236 1.340610008 1.719169786 0.969964194 1.371669049 1.115235503 1.090211988 1.163772437 1.165968461 1 20.53341431 -5.2795784 24.9996169 1.140473086 1.416405366 0.432664525 0.156431906 790.9279691 1090073.536 0.043412495 0.064538193 5.25E-06 5.2795784 0.27593228 TPHDILEDINAS(ph)PEMR ddPTM_HeLa_A485_30min_R1 6 TPHDILEDINASPEMR 16 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR ;;;;; 254.71 1.24E-50 1590710000 407073 572382 592695 438606 699193 563453 622326 713858 524882 530737 TRUE FALSE FALSE 497624.9845 639317.0958 811957.5446 462565.9352 629578.8899 592954.5278 489360.9662 538783.2062 630221.0029 398434.0334 1.248952004 1.604574515 2.03787196 1.160959899 1.580133315 1.488212547 1.228210758 1.352251969 1.581744907 1 18.60398136 -12.32738994 0.172225052 3.06E-10 1.611705935 0.260844276 0.240993918 93.73497999 1.502892831 34.59714303 0.917720102 4.71E-13 12.32738994 1.611705935 TPHDILEDINAS(ph)PEMR ddPTM_HeLa_A486_30min_R1 6 TPHDILEDINASPEMR 16 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR ;;;;; 275.23 1.24E-58 820226000 453170 485599 434207 158142.1 539721 434032 486196 502815 376360 486054 TRUE FALSE FALSE 421405.1232 447118.3667 602343.5789 368162.8009 472024.1595 380485.5448 364544.6183 388335.0009 408983.1878 364342.9147 1.156616764 1.227191057 1.653232585 1.010484316 1.295549166 1.044306145 1.000553609 1.065850289 1.122522688 1 18.47493741 -5.94647003 1.41000501 1.048109991 1.30861831 0.323985633 0.156683495 0.490562513 2.018718202 0.063776264 0.075006664 1.13E-06 5.94647003 0.260508319 TPHPS(ph)PAHSSR ddPTM_HeLa_A485_30min_R1 1 TPHPSPAHSSR 11 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 T(0.007)PHPS(0.986)PAHS(0.003)S(0.003)R 50.155 0.036165 146510000 84077 207010 212560 33276 198480 119730 108390 130310 134940 68539 TRUE FALSE FALSE 102779.6386 231218.0188 291194.7894 35093.78362 178718.6343 125998.8777 85231.59104 98351.26818 162021.2203 51453.48867 1.997525168 4.4937287 5.659378925 0.682048672 3.473401686 2.448791733 1.65647837 1.911459664 3.148886975 1 15.65098128 -5.263275198 24.99968923 2.143888899 4.094562653 0.380558497 1.166755986 173.2814649 2359712.868 0.319954875 0.503338719 5.45E-06 5.263275198 1.950673754 TPHPVLT(ph)PVAANQAK ddPTM_HeLa_A485_30min_R1 1 TPHPVLTPVAANQAK 15 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0Y837;A0A494C104 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 TPHPVLT(1)PVAANQAK 156.83 9.51E-08 0 284970 336000 216140 359310 424240 337290 405140 456730 270240 423960 TRUE FALSE FALSE 348360.5934 375292.2772 296099.1803 378938.1955 382001.176 354949.9829 318578.5293 344716.2514 324474.6892 318274.5744 1.094528503 1.17914627 0.930326216 1.190601531 1.200225235 1.115231977 1.000955008 1.083078194 1.019480396 1 18.27991239 -6.743951155 22.05477674 1.032801635 1.119567324 0.265003949 0.075069626 92.79484141 117025.0492 0.029349095 0.022648862 1.80E-07 6.743951155 0.086765688 TPHPVLT(ph)PVAANQAK ddPTM_HeLa_A486_30min_R1 2 TPHPVLTPVAANQAK 15 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0Y837;A0A494C104 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 TPHPVLT(1)PVAANQAK;TPHPVLT(1)PVAANQAK ; 180.88 1.05E-11 0 364770 376997 250494 129620 387391 370705 421007 432806 274244 465191 TRUE FALSE FALSE 339201.5067 347122.3847 347491.9853 301761.9106 338800.8085 324971.1862 315666.5956 334265.5219 298015.6907 348704.1457 0.972748706 0.995463888 0.996523814 0.865380909 0.9715996 0.931939554 0.905256217 0.958593484 0.854637647 1 18.41164399 -5.217848545 24.99811306 0.926233769 0.988967345 0.30341554 0.042674007 536.5034827 307668.8072 0.010765737 0.018646708 6.06E-06 5.217848545 0.062733576 TPHS(ph)PPLAK ddPTM_HeLa_A485_30min_R1 5 TPHSPPLAK 9 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 T(0.015)PHS(0.985)PPLAK;T(0.037)PHS(0.963)PPLAK;T(0.011)PHS(0.989)PPLAK;T(0.242)PHS(0.758)PPLAK;T(0.007)PHS(0.993)PPLAK ;;;; 106.01 0.00082756 4839830000 2160700 2466600 1832040 2269350 2862310 2615140 3467950 3741900 2145760 3253470 TRUE FALSE FALSE 2641340.261 2755047.413 2509787.834 2393318.844 2577328.366 2752064.687 2726994.152 2824193.158 2576394.35 2442439.805 1.081435152 1.127989893 1.027574079 0.979888569 1.055226975 1.126768685 1.116504139 1.156300005 1.054844564 1 21.21989158 -6.216319804 11.8222148 1.102248707 1.052860748 0.084552154 0.053720319 2.554283517 666.4720847 0.018283549 0.018268585 6.08E-07 6.216319804 -0.04938796 TPHS(ph)PPLAK ddPTM_HeLa_A486_30min_R1 7 TPHSPPLAK 9 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 TPHS(1)PPLAK;T(0.002)PHS(0.998)PPLAK;T(0.026)PHS(0.974)PPLAK;T(0.064)PHS(0.936)PPLAK;T(0.124)PHS(0.876)PPLAK;T(0.076)PHS(0.924)PPLAK;T(0.097)PHS(0.903)PPLAK ;;;;;; 108.35 0.00074564 6526590000 3062350 2820480 1746630 951769 2905440 2796690 3235770 3243570 2276080 3424080 TRUE FALSE FALSE 2847695.079 2596974.893 2422971.912 2215766.332 2541012.623 2451662.822 2426146.122 2505079.918 2473372.447 2566668.081 1.109490978 1.011807842 0.944014511 0.863285108 0.990004373 0.955192781 0.945251215 0.976004625 0.963651072 1 21.29146531 -4.39710244 2.585447952 0.951836718 1.120364681 0.640452821 0.035541302 0.228970555 2.363876622 0.009505661 0.07266863 4.01E-05 4.39710244 0.168527964 TPHT(ph)PGT(ph)PK ddPTM_HeLa_A486_30min_R1 1 TPHTPGTPK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 2 0 T(0.112)PHT(0.889)PGT(0.999)PK 54.471 0.0076314 0 108800 122360 74377 54811 118540 116300 158020 150820 92969 214470 TRUE FALSE FALSE 101173.6818 112663.748 103177.7663 127602.778 103671.6079 101952.0885 118481.7246 116481.5784 101027.6278 160765.316 0.629325307 0.700796358 0.641791207 0.793720817 0.644863024 0.634167188 0.736985611 0.724544207 0.628416814 1 17.29459666 -10.97669599 2.859043557 1.270424834 0.684726471 0.760621171 0.053556809 27560884.49 4788341.796 49105770.11 0.013306633 1.06E-11 10.97669599 -0.585698363 TPHT(ph)PGTPK ddPTM_HeLa_A486_30min_R1 1 TPHTPGTPK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 T(0.003)PHT(0.994)PGT(0.002)PK 69.672 0.019221 157360000 300210 312210 256150 96203 358230 301470 334830 332130 265550 299490 TRUE FALSE FALSE 279166.8293 287469.3426 355338.1399 223965.4458 313297.453 264277.6965 251051.9925 256511.2493 288568.0878 224495.7546 1.243528323 1.280511264 1.582827882 0.997637778 1.395560702 1.177205765 1.118292829 1.142610691 1.285405545 1 17.77632864 -9.353135862 0.08960255 0.61546254 1.564852903 0.245375282 0.147143311 68.55049214 1.618512044 11.81826473 5.481577026 4.43E-10 9.353135862 0.949390363 TPHTPGT(ph)PK ddPTM_HeLa_A485_30min_R1 5 TPHTPGTPK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 TPHT(0.003)PGT(0.997)PK;TPHTPGT(1)PK;TPHTPGT(1)PK;TPHTPGT(1)PK;T(0.004)PHT(0.009)PGT(0.987)PK ;;;; 107.06 0.0032095 4817690000 1616701 1780611 1202365 2284800 2077550 1670436 2601030 2706700 1512132 2874460 TRUE FALSE FALSE 1976330.56 1988837.967 1647169.848 2409612.839 1870701.827 1757897.446 2045298.692 2042877.581 1815603.022 2157910.023 0.915854016 0.92165009 0.763317205 1.116641942 0.866904462 0.814629631 0.947814631 0.946692661 0.84137105 1 21.04120328 -10.57988934 5.220307192 1.000606685 0.905361109 0.091362943 0.090833878 0.000626247 5.04E-05 0.085875805 0.020696358 2.63E-11 10.57988934 -0.095245576 TPHTPGT(ph)PK ddPTM_HeLa_A486_30min_R1 4 TPHTPGTPK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 TPHTPGT(1)PK;TPHTPGT(1)PK;TPHT(0.002)PGT(0.998)PK;TPHT(0.001)PGT(0.999)PK ;;; 96.229 0.0032301 2170160000 1632810 1162580 665549 666569 1282840 1313850 1663780 1548690 972619 2241360 TRUE FALSE FALSE 1518358.451 1070452.927 923267.3968 1551806.319 1121934.245 1151760.545 1247484.646 1196087.095 1056926.398 1680108.867 0.903726229 0.637133074 0.549528316 0.923634384 0.66777473 0.68552733 0.742502269 0.711910471 0.62908209 1 20.68012329 -10.481424 5.014839262 1.000717857 0.713837272 0.367970638 0.111303934 0.000866586 8.96E-05 0.104544411 0.025294049 3.30E-11 10.481424 -0.286880585 TPHVQAVQGPLGS(ph)PPK ddPTM_HeLa_A485_30min_R1 5 TPHVQAVQGPLGSPPK 16 0 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK ;;;; 175.77 8.77E-13 5256590000 1745660 1459240 1120460 3081330 1913530 1563750 2514830 2016740 1486080 3914790 TRUE FALSE FALSE 2133976.045 1629885.424 1534964.78 3249655.256 1723012.234 1645625.532 1977516.026 1522131.353 1784322.625 2938904.899 0.726112657 0.554589373 0.522291409 1.105736785 0.586276961 0.559945146 0.672875133 0.517924671 0.607138606 1 21.48684724 -10.0388551 4.812923056 1.000008297 0.649362109 0.288875562 0.164585522 1.49E-05 2.97E-06 0.161779622 0.039236394 9.14E-11 10.0388551 -0.350646189 TPHVQAVQGPLGS(ph)PPK ddPTM_HeLa_A486_30min_R1 5 TPHVQAVQGPLGSPPK 16 0 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK ;;;; 149.85 3.89E-08 6426310000 2450930 2311740 1175230 1268840 1926290 2805120 3505720 3016860 1951490 4304500 TRUE FALSE FALSE 2279132.464 2128549.303 1630310.53 2953923.644 1684676.746 2459052.815 2628551.776 2329986.836 2120646.724 3226625.182 0.706351787 0.659682852 0.505268024 0.915483974 0.522117275 0.762112943 0.814644289 0.722112642 0.657233674 1 21.62159457 -14 0.203119021 2.3886354 0.650475625 0.382393192 0.116553748 147.5154469 1.463511418 83.27514717 0.262053335 1.00E-14 14 -1.738159775 TPHVQAVQGPLGS(ph)PPKR ddPTM_HeLa_A485_30min_R1 3 TPHVQAVQGPLGSPPKR 17 1 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(1)PPKR;TPHVQAVQGPLGS(1)PPKR;TPHVQAVQGPLGS(1)PPKR ;; 114.39 9.53E-05 4634940000 2820030 2447070 1959100 4673660 3673860 2638820 3987110 3423620 2594940 6125750 TRUE FALSE FALSE 3447335.945 2733233.55 2683852.615 4928970.211 3308077.599 2776984.535 3135231.377 2583971.827 3115720.656 4598713.261 0.749630549 0.594347461 0.583609471 1.071815078 0.719348524 0.603861206 0.681762745 0.561890181 0.677520097 1 22.13279881 -9.98816183 4.723110461 1.000004876 0.692587959 0.302488305 0.139502427 195069983.8 14.27544203 10847.42285 0.035291534 1.03E-10 9.98816183 -0.307416917 TPHVQAVQGPLGS(ph)PPKR ddPTM_HeLa_A486_30min_R1 4 TPHVQAVQGPLGSPPKR 17 1 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(1)PPKR;TPHVQAVQGPLGS(1)PPKR;TPHVQAVQGPLGS(1)PPKR;TPHVQAVQGPLGS(1)PPKR ;;; 121.91 2.71E-05 7339430000 4802260 4779590 2594710 2154030 4092630 5196900 6324350 5902930 3716550 7288590 TRUE FALSE FALSE 4465646.373 4400837.881 3599451.201 5014690.699 3579294.183 4555759.316 4741930.738 4558961.699 4038703.546 5463479.623 0.817363051 0.805500923 0.658820285 0.917856576 0.655130874 0.833856742 0.867932355 0.834442885 0.739218195 1 22.38138865 -14 0.27846868 2.493711952 0.779666346 0.367336076 0.081150212 239.3407128 2.302063177 206.4630554 0.091106749 1.00E-14 14 -1.714045606 TPHVQAVQGPLGS(ph)PPKRGPLPTEEQR ddPTM_HeLa_A485_30min_R1 2 TPHVQAVQGPLGSPPKRGPLPTEEQR 26 2 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(0.996)PPKRGPLPT(0.004)EEQR;TPHVQAVQGPLGS(0.989)PPKRGPLPT(0.011)EEQR ; 170.29 2.79E-14 1908260000 368550 634380 377340 374500 789000 852860 1249360 1789060 437200 538610 TRUE FALSE FALSE 450532.676 708565.2226 516933.7684 394957.9867 710444.3897 897514.4308 982424.0297 1350290.23 524942.0298 404344.4394 1.114229929 1.752380282 1.27844906 0.976785998 1.757027723 2.219677936 2.429671176 3.339455421 1.298254603 1 18.62522525 -6.047515642 3.592660373 2.221569404 1.314131124 0.229265426 0.632391994 0.294714077 7.740738255 0.207988866 0.217751911 8.96E-07 6.047515642 -0.90743828 TPHVQAVQGPLGS(ph)PPKRGPLPTEEQR ddPTM_HeLa_A486_30min_R1 2 TPHVQAVQGPLGSPPKRGPLPTEEQR 26 2 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(0.722)PPKRGPLPT(0.278)EEQR;TPHVQAVQGPLGS(0.999)PPKRGPLPT(0.001)EEQR ; 176.18 7.71E-15 955600000 362040 282510 217670 190927 519270 335080 589530 549500 210440 550710 TRUE FALSE FALSE 336662.8656 260122.8787 301957.6534 444487.7049 454138.3146 293741.2364 442023.3586 424390.8455 228681.1086 412808.6315 0.815542215 0.630129457 0.731471269 1.076740337 1.100118263 0.711567574 1.07077063 1.028057102 0.553963971 1 18.65511361 -5.157321563 7.709390146 0.938674865 0.713398385 0.23824028 0.170702456 0.390767906 25.76896384 0.045888871 0.079923738 6.96E-06 5.157321563 -0.22527648 TPHYGSQT(ph)PLHDGSR ddPTM_HeLa_A485_30min_R1 3 TPHYGSQTPLHDGSR 15 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 TPHYGSQT(1)PLHDGSR;TPHYGSQT(1)PLHDGSR;TPHYGSQT(1)PLHDGSR ;; 223.18 1.49E-33 644920000 338653 468680 414100 429080 554040 424360 499790 529340 365290 416400 TRUE FALSE FALSE 413985.1915 523488.049 567292.8221 452519.5539 498877.8322 446578.8334 393005.7836 399518.535 438600.3524 312599.1433 1.324332457 1.674630466 1.814761282 1.447603308 1.59590275 1.428599032 1.257219644 1.278053839 1.40307599 1 18.2539543 -7.473792128 0.415431776 1.012016566 1.629668351 0.573922751 0.14373418 0.76018791 0.366153546 0.180178407 0.132488952 3.36E-08 7.473792128 0.617651785 TPHYGSQT(ph)PLHDGSR ddPTM_HeLa_A486_30min_R1 2 TPHYGSQTPLHDGSR 15 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 TPHYGS(0.001)QT(0.999)PLHDGSR;TPHYGSQT(1)PLHDGSR ; 186.74 7.85E-18 433930000 319620 339480 278580 65372 386340 254940 347880 323760 264860 264730 TRUE FALSE FALSE 297216.2885 312578.3684 386453.6366 152189.3197 337881.6347 223488.0948 260836.7445 250046.9156 287818.2781 198439.8849 1.497764871 1.575179146 1.947459488 0.766929087 1.702690137 1.126225683 1.314437088 1.260063801 1.450405387 1 17.5983425 -1 0.109892106 0.918024925 3.050538528 0.198854909 0.294676548 178.2404604 1.370572392 2.65597983 57.64030085 0.1 1 2.132513603 TPHYGSQTPLHDGS(ph)RTPAQSGAWDPNNPNTPSR ddPTM_HeLa_A486_30min_R1 2 TPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSR 33 1 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 T(0.015)PHY(0.068)GS(0.061)QT(0.061)PLHDGS(0.359)RT(0.359)PAQS(0.077)GAWDPNNPNTPSR;T(0.042)PHY(0.036)GS(0.033)QT(0.033)PLHDGS(0.286)RT(0.286)PAQS(0.286)GAWDPNNPNTPSR ; 109.09 5.62E-05 291660000 76074 78143 72676 19928.7 88366 71766 84861 81484 61123 60060 TRUE FALSE FALSE 70741.60545 71950.66409 100818.0935 46395.02074 77282.3123 62912.24058 63627.88023 62931.87198 66421.19085 45020.58508 1.571316884 1.598172569 2.239377684 1.030529049 1.716599466 1.397410551 1.413306383 1.397846605 1.47535157 1 15.45829719 -10.55127909 0.090295568 6.54E-11 2.143906607 0.311888139 0.275777107 98.95670494 1.451720736 30.32315056 8.60408553 2.81E-11 10.55127909 2.143906607 TPIS(ph)PLK ddPTM_HeLa_A485_30min_R1 6 TPISPLK 7 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 T(0.004)PIS(0.996)PLK;TPIS(1)PLK;T(0.028)PIS(0.972)PLK;TPIS(1)PLK;TPIS(1)PLK;T(0.001)PIS(0.999)PLK ;;;;; 123.5 0.0017859 17779630000 8260160 6301240 5284390 11497640 9316320 6588960 11152850 8271520 6829090 14122420 TRUE FALSE FALSE 10097604.09 7038115.204 7239305.763 12125726.96 8388754.469 6933947.757 8769952.487 6242916.751 8199625.723 10601960.6 0.952427997 0.663850345 0.682827077 1.14372496 0.791245581 0.654025045 0.827201007 0.588845496 0.773406546 1 23.33782775 -5.99603192 24.99957315 0.743986166 0.850633656 0.05582853 0.162728804 315.7398553 1989186.209 0.050608709 0.057138948 1.01E-06 5.99603192 0.10664749 TPIS(ph)PLK ddPTM_HeLa_A486_30min_R1 8 TPISPLK 7 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 TPIS(1)PLK;TPIS(1)PLK;T(0.001)PIS(0.999)PLK;TPIS(1)PLK;TPIS(1)PLK;TPIS(1)PLK;T(0.035)PIS(0.965)PLK;T(0.018)PIS(0.982)PLK ;;;;;;; 112.11 0.0028214 20260160000 11926950 12029440 6632910 5945840 10329860 13365830 17244000 15856460 9328360 15829940 TRUE FALSE FALSE 11090932.4 11076183.36 9201350.387 13842216.01 9034192.637 11716889.79 12929368.81 12246290.2 10136949.76 11866019.99 0.93468007 0.933437107 0.775436953 1.166542448 0.761349858 0.987432163 1.08961293 1.032046989 0.854283893 1 23.50033278 -6.49594509 24.7352646 1.002637434 0.916926894 0.098679682 0.117287976 1471.288598 1351200.806 0.040093793 0.035248071 3.19E-07 6.49594509 -0.085710541 TPIS(ph)PLKTGVSKPIVK ddPTM_HeLa_A485_30min_R1 2 TPISPLKTGVSKPIVK 16 2 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 T(0.049)PIS(0.951)PLKTGVSKPIVK;T(0.144)PIS(0.837)PLKT(0.018)GVSKPIVK ; 153.82 1.44E-08 4797630000 2337590 2814130 1117107 1718890 3267160 3876070 5989610 8829800 2010340 2867560 TRUE FALSE FALSE 2857578.831 3143218.024 1530371.366 1812788.608 2941870.079 4079015.032 4709880.893 6664277.705 2413796.798 2152730.066 1.327420877 1.46010783 0.710897939 0.84208821 1.366576389 1.894810268 2.18786413 3.095733094 1.121272396 1 21.037736 -6.193883939 2.981507541 2.024775932 1.087450727 0.261079936 0.587653587 0.303874663 5.321213015 0.208304567 0.202586536 6.40E-07 6.193883939 -0.937325205 TPIS(ph)PLKTGVSKPIVK ddPTM_HeLa_A486_30min_R1 2 TPISPLKTGVSKPIVK 16 2 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 T(0.011)PIS(0.989)PLKTGVSKPIVK;T(0.07)PIS(0.93)PLKTGVSKPIVK ; 170.14 1.67E-12 6487600000 5623300 3133400 1604830 2576800 4367900 3971600 6653900 6627000 2221310 6996400 TRUE FALSE FALSE 5229135.709 2885097.972 2226263.155 5998920.624 3820037.253 3481624.372 4989023.842 5118176.766 2413854.939 5244455.901 0.997078783 0.550123412 0.424498403 1.143859485 0.728395343 0.663867604 0.951294841 0.975921404 0.460267945 1 22.32236167 -5.244830104 24.99772465 0.83709582 0.646522571 0.125068127 0.227652366 1771.538428 2666243.104 0.060839767 0.105003046 5.69E-06 5.244830104 -0.190573248 TPITSVPLGPLAS(ph)SPTK ddPTM_HeLa_A486_30min_R1 1 TPITSVPLGPLASSPTK 17 0 Q15911 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 TPITSVPLGPLAS(0.663)S(0.336)PTK 162.29 7.81E-12 494120000 432840 428180 228500 202390 378240 451040 616730 499370 360280 629710 TRUE FALSE FALSE 402500.1512 394249.4574 316981.3194 471174.1482 330797.6123 395395.2706 462417.6309 385674.3522 391509.3605 472026.5173 0.852706652 0.835227351 0.671532865 0.998194235 0.700803027 0.837654785 0.979643334 0.817060775 0.829422387 1 18.84850838 -6.536026965 24.51301567 0.893767046 0.810940225 0.166946749 0.098816619 379.2330776 707019.1071 0.036349703 0.028173756 2.91E-07 6.536026965 -0.082826822 TPITSVPLGPLASS(ph)PTK ddPTM_HeLa_A485_30min_R1 2 TPITSVPLGPLASSPTK 17 0 Q15911 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 TPITSVPLGPLAS(0.09)S(0.91)PT(0.001)K;TPITSVPLGPLAS(0.23)S(0.768)PT(0.001)K ; 220.97 3.82E-34 694390000 431770 458040 326460 607600 563210 481040 696980 700150 388820 780920 TRUE FALSE FALSE 527815.7469 511603.7936 447231.1391 640791.6495 507134.8348 506226.5106 548064.5292 528437.1147 466852.6075 586251.0158 0.900323808 0.872670204 0.762866293 1.093032903 0.86504726 0.863497882 0.934863249 0.901383709 0.796335691 1 19.16115899 TPITSVPLGPLASS(ph)PTK ddPTM_HeLa_A486_30min_R1 1 TPITSVPLGPLASSPTK 17 0 Q15911 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 TPITSVPLGPLAS(0.158)S(0.818)PT(0.024)K 109.79 0.00016509 369880000 631600 600370 350040 296970 551550 639410 795050 751050 553410 988200 TRUE FALSE FALSE 587328.1016 552794.4947 485584.8624 691361.168 482369.456 560526.0952 596120.0808 580052.3103 601380.0244 740748.2879 0.792884859 0.746264964 0.655532885 0.933328067 0.651192131 0.756702519 0.80475391 0.783062641 0.811854761 1 19.49862386 -8.914114747 0.580517997 1.014944286 0.755026002 0.474994442 0.074472053 3.166964073 1.35348006 0.180385034 0.031095912 1.22E-09 8.914114747 -0.259918283 TPKDS(ph)PGIPPSAGAHQLFR ddPTM_HeLa_A485_30min_R1 4 TPKDSPGIPPSAGAHQLFR 19 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 0 T(0.003)PKDS(0.997)PGIPPSAGAHQLFR;T(0.007)PKDS(0.987)PGIPPS(0.006)AGAHQLFR;T(0.001)PKDS(0.999)PGIPPSAGAHQLFR;TPKDS(1)PGIPPSAGAHQLFR ;;; 187.79 1.64E-18 3901630000 2618920 3197760 1870900 2435170 3807350 3890380 6146950 7667610 2430140 3762650 TRUE FALSE FALSE 3201489.719 3571710.215 2563023.765 2568197.171 3428276.866 4094074.281 4833603.917 5787116.625 2917846.807 2824690.601 1.133394828 1.264460686 0.907364425 0.90919592 1.213682257 1.449388573 1.711197649 2.048761242 1.03297926 1 21.42966142 -6.196248166 2.963926068 1.537601747 1.059585714 0.249275122 0.305824418 0.312039903 5.407833758 0.108925787 0.105761725 6.36E-07 6.196248166 -0.478016033 TPKDS(ph)PGIPPSAGAHQLFR ddPTM_HeLa_A486_30min_R1 3 TPKDSPGIPPSAGAHQLFR 19 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 0 T(0.009)PKDS(0.991)PGIPPSAGAHQLFR;T(0.029)PKDS(0.971)PGIPPSAGAHQLFR;T(0.006)PKDS(0.993)PGIPPSAGAHQLFR ;; 145.13 1.36E-08 2631180000 2050440 1836610 1115440 421936 1962460 1712360 2266930 2061180 1520620 2083060 TRUE FALSE FALSE 1906714.744 1691070.335 1547368.241 982288.3315 1716309.968 1501106.433 1699720.137 1591894.309 1652428.566 1561448.218 1.221119422 1.083014035 0.990982745 0.629087997 1.099178281 0.961355245 1.088553637 1.019498624 1.058266645 1 20.5744533 -9.22162044 14.51979768 1.00000025 1.009554131 0 0.14639807 0 0 0.146347454 0.035494471 6.00E-10 9.22162044 0.009553881 TPKDS(ph)PGIPPSANAHQLFR ddPTM_HeLa_A485_30min_R1 4 TPKDSPGIPPSANAHQLFR 19 1 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 TPKDS(1)PGIPPSANAHQLFR;TPKDS(1)PGIPPSANAHQLFR;T(0.001)PKDS(0.999)PGIPPSANAHQLFR;T(0.101)PKDS(0.899)PGIPPSANAHQLFR ;;; 199.75 1.06E-25 3560680000 1459490 1790360 1499670 1475710 2653960 1970180 2864160 3330960 1895070 2656200 TRUE FALSE FALSE 1784148.515 1999727.028 2054460.339 1556324.301 2389722.424 2073335.578 2252208.818 2514036.837 2275393.166 1994058.224 0.894732408 1.002842848 1.030291049 0.780480872 1.198421588 1.03975679 1.129459908 1.260764007 1.141086624 1 20.9272761 -5.780374484 24.99999842 1.136922392 0.93986962 0.524725024 0.09325488 196.2258014 259075.554 0.028802228 0.032711716 1.66E-06 5.780374484 -0.197052772 TPKDS(ph)PGIPPSANAHQLFR ddPTM_HeLa_A486_30min_R1 6 TPKDSPGIPPSANAHQLFR 19 1 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 TPKDS(1)PGIPPSANAHQLFR;T(0.001)PKDS(0.999)PGIPPSANAHQLFR;T(0.015)PKDS(0.984)PGIPPSANAHQLFR;TPKDS(1)PGIPPSANAHQLFR;TPKDS(1)PGIPPSANAHQLFR;T(0.01)PKDS(0.99)PGIPPSANAHQLFR ;;;;; 216.87 8.34E-35 3374570000 4048550 3954820 2610570 666976 4549920 4120470 5193730 4994930 3455700 3973930 TRUE FALSE FALSE 3764767.552 3641425.66 3621452.617 1552753.835 3979226.607 3612128.305 3894203.82 3857693.478 3755242.858 2978832.062 1.263840147 1.222434023 1.215729031 0.52126263 1.33583449 1.212598841 1.307292167 1.29503557 1.260642688 1 21.50631536 TPLALAGS(ph)PTPK ddPTM_HeLa_A486_30min_R1 3 TPLALAGSPTPK 12 0 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785 M0QXA7 WIZ Protein Wiz 1 0 TPLALAGS(0.999)PT(0.001)PK;TPLALAGS(0.986)PT(0.014)PK;TPLALAGS(1)PTPK ;; 134.61 1.80E-05 143380000 764528 750340 509080 316137 735400 727828 829652 787072 620687 976400 TRUE FALSE FALSE 710938.5352 690880.3257 706209.4096 735982.9127 643159.2747 638035.9814 622064.2944 607872.8873 674488.6489 731903.0847 0.971356113 0.943950559 0.964894703 1.005574274 0.878749233 0.871749272 0.849927138 0.830537403 0.921554592 1 19.4812931 -5.775930086 24.92223188 0.880488314 0.969012297 0.39955368 0.046330635 197.5074306 339687.2769 0.013814168 0.015732654 1.68E-06 5.775930086 0.088523983 TPLDLFAHFGPEPGDHSDPLPPSAPS(ph)PTR ddPTM_HeLa_A485_30min_R1 5 TPLDLFAHFGPEPGDHSDPLPPSAPSPTR 29 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 TPLDLFAHFGPEPGDHSDPLPPS(0.101)APS(0.87)PT(0.029)R;TPLDLFAHFGPEPGDHSDPLPPS(0.134)APS(0.82)PT(0.045)R;TPLDLFAHFGPEPGDHSDPLPPS(0.079)APS(0.871)PT(0.05)R;TPLDLFAHFGPEPGDHSDPLPPS(0.339)APS(0.658)PT(0.003)R;TPLDLFAHFGPEPGDHSDPLPPS(0.001)APS(0.976)PT(0.023)R ;;;; 230.29 3.53E-39 1430154000 363424 466643 469760 368509 418088 399712 452803 402795 376300 446482 TRUE FALSE FALSE 444266.415 521212.8396 643543.7723 388639.7136 376461.6907 420640.3022 356057.94 304008.8947 451819.9584 335182.2543 1.325447303 1.555013229 1.919981634 1.159487737 1.123155197 1.254959942 1.062281596 0.906995793 1.347982933 1 18.35458624 -5.384897751 7.75379583 1.118109051 1.594411488 0.605458056 0.177047487 0.182912414 10.74706291 0.049996516 0.074271268 4.12E-06 5.384897751 0.476302437 TPLDLFAHFGPEPGDHSDPLPPSAPS(ph)PTR ddPTM_HeLa_A486_30min_R1 3 TPLDLFAHFGPEPGDHSDPLPPSAPSPTR 29 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 TPLDLFAHFGPEPGDHSDPLPPS(0.042)APS(0.919)PT(0.039)R;TPLDLFAHFGPEPGDHSDPLPPS(0.001)APS(0.977)PT(0.023)R;TPLDLFAHFGPEPGDHSDPLPPS(0.112)APS(0.859)PT(0.029)R ;; 240.07 3.52E-50 739081000 189639 205614 153315 47823.2 170427 171867 166285 166866 168765 199919 TRUE FALSE FALSE 176346.2854 189320.3978 212682.6739 111334.8265 149050.4565 150663.797 124678.7342 128874.2545 183393.6861 149857.9811 1.176756046 1.263332099 1.419228207 0.742935582 0.9946114 1.005377196 0.831979273 0.859975915 1.223783243 1 17.1932364 -5.254546417 24.98090804 0.944497149 1.284128119 0.569732687 0.13339551 383.9009836 1391298.266 0.035995278 0.060633841 5.56E-06 5.254546417 0.339630969 TPLGAS(ph)LDEQSSSTLK ddPTM_HeLa_A485_30min_R1 4 TPLGASLDEQSSSTLK 16 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK ;;; 226.65 4.97E-34 1590450000 864470 916210 865716 1379940 1376050 1136010 1771640 2153390 1395270 2320200 TRUE FALSE FALSE 1056768.369 1023352.79 1185980.374 1455322.628 1239045.63 1195489.727 1393114.641 1625267.726 1675287.891 1741816.84 0.606704646 0.587520321 0.68088696 0.835519898 0.711352423 0.686346405 0.799805473 0.933087618 0.961804854 1 20.7321615 -6.778546113 0.385482375 1.036563234 0.586501309 0.805219254 0.062219385 0.619199009 0.22321343 0.081329738 0.097894089 1.67E-07 6.778546113 -0.450061925 TPLGAS(ph)LDEQSSSTLK ddPTM_HeLa_A486_30min_R1 4 TPLGASLDEQSSSTLK 16 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK;TPLGAS(1)LDEQSSSTLK ;;; 241.51 1.66E-41 2051100000 1216900 1242180 562500 545846 1062930 1682320 1950750 2165960 987370 1646100 TRUE FALSE FALSE 1131601.594 1143745.133 780315.0643 1270757.074 929607.408 1474772.463 1462651.717 1672818.191 1072956.027 1233905.846 0.917089094 0.926930638 0.632394333 1.02986551 0.753386015 1.195206642 1.185383571 1.355709754 0.869560697 1 20.23480088 -6.267735724 24.9878987 1.147417217 0.853788179 0.419979172 0.156685367 456.5069619 1811705.047 0.052417105 0.047338035 5.40E-07 6.267735724 -0.293629039 TPLHEIALSIK ddPTM_HeLa_A485_30min_R1 1 TPLHEIALSIK 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 133.07 0.0004502 18292000 29398 30511 29167 29410 39984 30198 38473 40996 28329 42627 FALSE FALSE TRUE 35937.48368 34078.99604 39957.08704 31016.59383 36003.05257 31779.12059 30252.92925 30941.66672 34014.37045 32000.87339 1.123015714 1.06493956 1.248624891 0.969242103 1.125064686 0.993070414 0.945378237 0.966900695 1.062920066 1 14.96582366 -5.866055812 1.2230236 0.989820474 1.127235542 0.3760873 0.071055058 0.472323211 1.490553651 0.0294766 0.038401532 1.36E-06 5.866055812 0.137415068 TPLHEIALSIK ddPTM_HeLa_A486_30min_R1 2 TPLHEIALSIK 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 133.07 0.0004502 34878000 92404 89777 60154 25962 96656 90062 108974 103482 80634 108709 FALSE FALSE TRUE 85926.95677 82662.74356 83447.23978 60440.84805 84532.5032 78951.06612 81707.55259 79921.4076 87623.42004 81487.55882 1.054479457 1.014421646 1.024048836 0.741718723 1.037366985 0.968872639 1.002699722 0.980780487 1.075298135 1 16.31429219 -7.273081537 1.500501075 1.030646308 0.97007781 0.058756977 0.085611698 1.340581633 5.401566416 0.071492405 0.027303529 5.33E-08 7.273081537 -0.060568498 TPLS(ph)PSPMK ddPTM_HeLa_A485_30min_R1 3 TPLSPSPMK 9 0 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 T(0.122)PLS(0.858)PS(0.02)PMK;T(0.044)PLS(0.677)PS(0.28)PMK;T(0.012)PLS(0.986)PS(0.002)PMK ;; 99.973 0.0018624 0 1256580 1431510 1050060 1320800 1562230 1332430 1882120 1808110 1179130 1799180 TRUE FALSE FALSE 1536101.886 1598912.642 1438520.891 1392951.96 1406688.896 1402193.974 1479989.686 1364668.187 1415770.575 1350677.537 1.13728247 1.183785617 1.06503651 1.031298679 1.041469083 1.038141181 1.095738728 1.010358246 1.048192878 1 20.36525185 -4.858960881 4.876352178 1.041486627 1.160011789 0.767383488 0.026497536 0.085764798 3.3502975 0.006720468 0.014871186 1.38E-05 4.858960881 0.118525162 TPLS(ph)PSPMK ddPTM_HeLa_A486_30min_R1 2 TPLSPSPMK 9 0 Q69YQ0-2;Q69YQ0;A0A494C1J1;F8WAN1 Q69YQ0-2 SPECC1L;SPECC1L-ADORA2A Cytospin-A 1 0 T(0.005)PLS(0.98)PS(0.015)PMK;T(0.003)PLS(0.903)PS(0.094)PMK ; 112.85 0.0012252 133920000 882680 858340 515560 312650 872180 821010 969820 1018430 684930 976960 TRUE FALSE FALSE 820808.6902 790322.0124 715198.6392 727865.0005 762783.0516 719722.1336 727160.7783 786555.7212 744300.2839 732322.8571 1.120828993 1.079198887 0.976616573 0.993912717 1.041593942 0.982793486 0.992951089 1.074055949 1.016355391 1 19.4821203 -4.584494766 4.913208751 1.011654949 1.112118102 0.637095854 0.027957558 0.115417869 5.448183209 0.007515362 0.021947079 2.60E-05 4.584494766 0.100463153 TPLSFTNPLHS(ph)DDS(ph)DSDER ddPTM_HeLa_A486_30min_R1 1 TPLSFTNPLHSDDSDSDER 19 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 TPLSFTNPLHS(1)DDS(1)DSDER 154.14 8.46E-09 49418000 108020 121420 90264 29719 98493 102430 88748 97172 109130 112040 TRUE FALSE FALSE 100448.3558 111798.237 125216.6382 69187.33392 86139.08953 89793.22803 66542.31172 75048.05685 118589.4763 83984.45474 1.196035101 1.331177744 1.490950183 0.823811194 1.025655162 1.069164863 0.792317006 0.893594619 1.412040795 1 16.35783469 -5.25975505 24.99889548 0.992936773 1.338566683 0.438286822 0.174611152 137.974468 2047810.031 0.048190592 0.078222976 5.50E-06 5.25975505 0.34562991 TPLSFTNPLHS(ph)DDS(ph)DSDERNSDGAVTQNK ddPTM_HeLa_A485_30min_R1 1 TPLSFTNPLHSDDSDSDERNSDGAVTQNK 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 TPLSFTNPLHS(1)DDS(0.676)DS(0.324)DERNSDGAVTQNK 166.07 1.29E-13 267190000 136530 134010 116960 146650 163410 143420 224750 217470 147670 192790 TRUE FALSE FALSE 166900.6275 149681.3038 160228.3711 154661.1182 147140.3266 150929.2494 176730.3265 164135.1415 177306.0145 144731.001 1.153178146 1.034203472 1.10707706 1.068610851 1.016646921 1.04282599 1.221095171 1.134070381 1.225072812 1 17.14301445 -6.744581832 24.99615121 1.15623214 1.067916611 0.214311553 0.068588732 304.4254317 451397.929 0.024737157 0.019109439 1.80E-07 6.744581832 -0.088315529 TPLSFTNPLHS(ph)DDS(ph)DSDERNSDGAVTQNK ddPTM_HeLa_A486_30min_R1 2 TPLSFTNPLHSDDSDSDERNSDGAVTQNK 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 TPLSFTNPLHS(1)DDS(0.984)DS(0.016)DERNSDGAVTQNK;TPLSFTNPLHS(1)DDS(0.974)DS(0.026)DERNSDGAVTQNK ; 205.81 2.54E-28 538070000 126006 114298 80069 40119 132347 115863 142051 133528.5 98951 142476 TRUE FALSE FALSE 117173.6301 105240.6102 111073.8611 93399.0595 115746.8052 101569.0011 106508.3373 103126.9755 107528.1524 106799.0822 1.097140796 0.98540744 1.040026363 0.874530544 1.083780897 0.951028782 0.997277646 0.965616682 1.006826558 1 16.70453972 -3.608477286 1.545830112 0.986318895 1.545836894 0.27050025 0.05240585 9.44248304 4.886213876 0.013481501 13.22091557 0.000246333 3.608477286 0.559517999 TPLSFTNPLHS(ph)DDSDS(ph)DERNSDGAVTQNK ddPTM_HeLa_A485_30min_R1 1 TPLSFTNPLHSDDSDSDERNSDGAVTQNK 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 TPLSFT(0.002)NPLHS(0.994)DDS(0.076)DS(0.843)DERNS(0.085)DGAVTQNK 167.76 4.70E-14 179630000 222750 261610 216600 277980 319030 287350 413140 412790 229550 381240 TRUE FALSE FALSE 272299.969 292203.0138 296729.3535 293165.3435 287266.253 302395.2017 324869.264 311552.6053 275618.5794 286203.8842 0.951419544 1.020961035 1.036776123 1.024323427 1.00371193 1.056572669 1.135097327 1.088568753 0.963014811 1 18.12668373 -6.27305933 15.61061537 1.059590093 1.010757658 0.130375997 0.048952761 9.194190763 12347.85875 0.017460278 0.015709516 5.33E-07 6.27305933 -0.048832435 TPLYLQPDAYGS(ph)LDR ddPTM_HeLa_A485_30min_R1 5 TPLYLQPDAYGSLDR 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR ;;;; 265.27 1.15E-50 7094580000 1535658 1864522 1801390 1319130 2178990 1854808 2270620 2330490 1585977 1923030 TRUE FALSE FALSE 1877259.824 2082561.629 2467799.123 1391190.732 1962042.105 1951922.879 1785483.488 1758933.673 1904268.036 1443654.012 1.300352999 1.442562838 1.709411745 0.963659381 1.359080561 1.352071108 1.236780747 1.218390043 1.31906123 1 20.46129359 -13.42561855 0.077394836 9.39E-12 1.679558562 0.278142184 0.171471477 313.7737496 1.923880298 56.73479568 6.972989986 3.75E-14 13.42561855 1.679558562 TPLYLQPDAYGS(ph)LDR ddPTM_HeLa_A486_30min_R1 6 TPLYLQPDAYGSLDR 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR ;;;;; 261.66 1.88E-50 7235580000 2353700 2196710 2149870 767771 2721290 2259930 2674070 2487760 2208810 2570270 TRUE FALSE FALSE 2188717.785 2022634.699 2982357.24 1787409.689 2379960.433 1981122.814 2004989.403 1921351.355 2400271.429 1926657.662 1.136018 1.049815304 1.547943518 0.927725628 1.235279354 1.028269242 1.040656803 0.997245849 1.245821443 1 20.87766882 TPMAGVS(ph)PK ddPTM_HeLa_A485_30min_R1 1 TPMAGVSPK 9 0 A0A087WWD1;B7Z6K7;Q9H707 A0A087WWD1 ZNF814;ZNF552 Putative uncharacterized zinc finger protein 814;Zinc finger protein 552 1 0 TPMAGVS(1)PK 67.385 0.011755 0 226540 244130 175570 372770 324090 234520 387730 374280 236480 536480 TRUE FALSE FALSE 276933.0414 272678.8799 240520.6491 393133.4812 291822.4617 246799.1046 304888.318 282487.2432 283939.3669 402745.4092 0.687613155 0.67705025 0.597202708 0.976133985 0.724582962 0.61279185 0.757024937 0.701404005 0.705009568 1 18.61950862 -9.997375996 4.054467625 1.000023413 0.716547969 0.429351636 0.098415566 51916630.64 116906593.5 18392.66704 0.024955863 1.01E-10 9.997375996 -0.283475444 TPNNVVS(ph)TPAPS(ph)PDASQLASSLSSQK ddPTM_HeLa_A486_30min_R1 1 TPNNVVSTPAPSPDASQLASSLSSQK 26 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 2 0 TPNNVVS(0.531)T(0.472)PAPS(0.993)PDAS(0.001)QLAS(0.002)S(0.001)LSSQK 84.58 1.01E-05 0 127200 133920 90993 37975 137180 111990 147410 150010 91775 116530 TRUE FALSE FALSE 118283.9369 123307.6915 126227.9265 88407.71915 119973.6052 98173.81243 110526.4589 115855.9977 99730.13089 87350.12952 1.354135793 1.411648639 1.445080015 1.012107476 1.37347942 1.12391147 1.265326788 1.326340308 1.141728483 1 16.41452222 -1.000000001 0.029235076 4.90E-13 3.053857121 0.39834542 0.120874416 1558.73405 3.503634416 118.0777918 279.7774342 0.1 1.000000001 3.053857121 TPPGALLGAPPPLVPAPRPS(ph)SPPRGPGPAR ddPTM_HeLa_A485_30min_R1 2 TPPGALLGAPPPLVPAPRPSSPPRGPGPAR 30 2 J3KNZ9;Q9HAH7 J3KNZ9 FBRS Probable fibrosin-1 1 0 TPPGALLGAPPPLVPAPRPS(0.5)S(0.5)PPRGPGPAR;TPPGALLGAPPPLVPAPRPS(0.5)S(0.5)PPRGPGPAR ; 74.748 0.0010659 1365850000 307480 490770 470770 306690 569110 519050 600710 722040 423520 431820 TRUE FALSE FALSE 375877.8652 548161.2824 644927.4134 323443.6981 512447.4101 546226.6554 472363.4012 544958.5579 508516.5792 324175.2211 1.159489809 1.690941339 1.989440807 0.997743434 1.580772918 1.684973496 1.457123711 1.68106173 1.568647282 1 18.30641429 -10.13949629 3.683579069 0.999636629 1.544489442 0.263919638 0.267302528 171925885.8 290888691.7 749383.2566 0.067101851 7.25E-11 10.13949629 0.544852813 TPPGALLGAPPPLVPAPRPS(ph)SPPRGPGPAR ddPTM_HeLa_A486_30min_R1 2 TPPGALLGAPPPLVPAPRPSSPPRGPGPAR 30 2 J3KNZ9;Q9HAH7 J3KNZ9 FBRS Probable fibrosin-1 1 0 TPPGALLGAPPPLVPAPRPS(0.5)S(0.5)PPRGPGPAR;TPPGALLGAPPPLVPAPRPS(0.5)S(0.5)PPRGPGPAR ; 80.359 0.00073144 1146030000 295280 271010 242840 104721 359750 241230 308090 345340 228748 323910 TRUE FALSE FALSE 274582.3968 249534.1806 336874.1515 243795.7803 314626.8005 211469.4952 231002.6234 266713.6207 248576.0608 242800.8277 1.130895638 1.027732001 1.387450589 1.004097814 1.295822603 0.870958708 0.951407891 1.09848728 1.023785887 1 17.88941381 -6.263416068 24.99957077 0.992738408 1.164293128 0.364579272 0.1188546 210.7446854 2665312.039 0.039864421 0.036958671 5.45E-07 6.263416068 0.17155472 TPPGALLGAPPPLVPAPRPSS(ph)PPR ddPTM_HeLa_A485_30min_R1 2 TPPGALLGAPPPLVPAPRPSSPPR 24 1 J3KNZ9;Q9HAH7 J3KNZ9 FBRS Probable fibrosin-1 1 0 TPPGALLGAPPPLVPAPRPS(0.21)S(0.79)PPR;TPPGALLGAPPPLVPAPRPS(0.247)S(0.753)PPR ; 87.091 0.0015776 195962000 115323 155518 135846 171838 168446 141755 159171 150652 146771 216853 TRUE FALSE FALSE 140976.2035 173704.4773 186101.0884 181225.0748 151674.9248 149177.0726 125162.8155 113704.3608 176226.5934 162795.538 0.86597093 1.067010063 1.14315841 1.113206646 0.931689693 0.9163462 0.768834435 0.698448878 1.082502602 1 17.31270163 -5.985483565 3.200552308 0.86837426 1.054913911 0.244061542 0.123437841 0.307419372 6.5425654 0.042083029 0.046092595 1.03E-06 5.985483565 0.186539651 TPPGPCCS(ph)PGVGWAQR ddPTM_HeLa_A485_30min_R1 2 TPPGPCCSPGVGWAQR 16 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 T(0.008)PPGPCCS(0.992)PGVGWAQR;T(0.002)PPGPCCS(0.998)PGVGWAQR ; 101.01 0.00028029 118760000 62534 169820 187732 69563 153864 112428 119193 124284 136380 104967 TRUE FALSE FALSE 76444.47256 189678.9718 257181.879 73363.05055 138544.7599 118314.5562 93726.44183 93803.15413 163750.215 78800.65867 0.970099411 2.40707343 3.263702148 0.930995398 1.758167536 1.501441209 1.189411909 1.190385407 2.078031044 1 16.26592007 -5.289899937 24.99948489 1.399362672 2.232970489 0.28014781 0.612692843 903.8519512 793933.0992 0.172279011 0.255586784 5.13E-06 5.289899937 0.833607817 TPPIMGIIIDHFVDRPYPS(ph)SSPMHPCNYR ddPTM_HeLa_A486_30min_R1 1 TPPIMGIIIDHFVDRPYPSSSPMHPCNYR 29 1 O75143-4;O75143-3;O75143-2;O75143;O75143-5 O75143-4 ATG13 Autophagy-related protein 13 1 0 TPPIMGIIIDHFVDRPYPS(0.333)S(0.333)S(0.333)PMHPCNYR 134.96 1.37E-06 71138000 12250 10657 9298 5953.7 12488 8878.6 10872 9314.6 11520 12129 TRUE FALSE FALSE 11391.33826 9812.500508 12898.43461 13860.51448 10921.63859 7783.248603 8151.710608 7193.868916 12518.56288 9091.819453 1.252921741 1.079266978 1.41868574 1.52450393 1.201259951 0.856071619 0.896598382 0.791246345 1.376904033 1 13.15035332 -6.075332134 5.36814779 0.968386698 1.315215816 0.430768437 0.182157249 0.213750028 11.01809749 0.062139961 0.062908391 8.41E-07 6.075332134 0.346829117 TPPKS(ph)PATPK ddPTM_HeLa_A485_30min_R1 1 TPPKSPATPK 10 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 T(0.13)PPKS(0.87)PATPK 70.412 0.0029338 0 238210 182600 116540 336620 256670 256690 447900 409230 191120 452330 TRUE FALSE FALSE 291198.9927 203953.4816 159652.9956 355008.6982 231115.0336 270129.8915 352202.506 308865.7009 229476.0309 339572.4555 0.857545976 0.600618449 0.470158851 1.045457876 0.68060595 0.795500009 1.037193978 0.909572304 0.675779284 1 18.37335991 -5.260218743 24.99894069 0.868966683 0.638558836 0.329953122 0.153042491 132.8975205 2721741.524 0.04236093 0.068427841 5.49E-06 5.260218743 -0.230407847 TPPQQKS(ph)PTTAR ddPTM_HeLa_A485_30min_R1 1 TPPQQKSPTTAR 12 1 G3V1S3;Q6ZUT9;Q6ZUT9-2 G3V1S3 DENND5B DENN domain-containing protein 5B 1 0 T(0.013)PPQQKS(0.858)PT(0.055)T(0.073)AR 50.305 0.025013 59083000 37622 37945 36535 39224 80562 57804 80803 108950 48212 63001 TRUE FALSE FALSE 45990.88411 42382.33767 50050.81685 41366.7078 72540.96441 60830.52806 63538.77895 82229.84167 57887.70617 47296.01015 0.972405156 0.896108097 1.05824607 0.874634196 1.533764987 1.286166166 1.343427886 1.73862111 1.22394481 1 15.52943086 -5.756027896 24.99948552 1.387299514 0.954180994 0.520618321 0.188302778 97.32551229 449613.0317 0.053721852 0.067333024 1.75E-06 5.756027896 -0.43311852 TPPRDLPT(ph)IPGVTSPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_HeLa_A485_30min_R1 2 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 37 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.419)PPRDLPT(0.581)IPGVTSPSSDEPPMEAS(0.307)QS(0.346)HLRNS(0.346)PEDKR;T(0.442)PPRDLPT(0.558)IPGVTSPS(0.008)S(0.047)DEPPMEAS(0.268)QS(0.338)HLRNS(0.338)PEDKR ; 123.75 3.79E-06 803130000 234270 239951 207431 213740 324070 290110 378030 344450 246016 365190 TRUE FALSE FALSE 286382.5533 268011.1822 284168.3588 225416.075 291804.4529 305299.711 297260.8023 259973.0974 295389.1546 274154.8538 1.044601433 0.977590506 1.036524996 0.822221718 1.064378211 1.113603158 1.084280647 0.948271 1.077453674 1 18.06463149 TPPRDLPT(ph)IPGVTSPSSDEPPMEASQSHLRNS(ph)PEDK ddPTM_HeLa_A486_30min_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLRNSPEDK 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.337)PPRDLPT(0.66)IPGVT(0.002)S(0.002)PS(0.004)S(0.003)DEPPMEAS(0.233)QS(0.205)HLRNS(0.555)PEDK 55.574 0.018415 380730000 35812 35328 18283 15599 28761 30421 44071 51373 23368 47174 TRUE FALSE FALSE 33301.76373 32528.48062 25362.66724 36315.26033 25153.52719 26667.96632 33043.96966 39676.48936 25393.55706 35361.32335 0.941756716 0.919888668 0.717243158 1.026976846 0.711328786 0.754156344 0.934466432 1.122030671 0.718116706 1 15.10988465 -9.996508946 5.240484974 1.000000693 0.87423482 0.073818138 0.136007611 1.09E-06 2.09E-07 0.130398232 0.031626042 1.01E-10 9.996508946 -0.125765873 TPPSTTVGSHS(ph)PPETPVLTR ddPTM_HeLa_A486_30min_R1 2 TPPSTTVGSHSPPETPVLTR 20 0 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 TPPSTTVGSHS(1)PPETPVLTR;TPPSTTVGSHS(1)PPETPVLTR ; 133.48 2.43E-07 691300000 665910 739470 676710 209585 929190 670490 754120 752860 699040 724170 TRUE FALSE FALSE 619233.1478 680871.7041 938750.2349 487924.4718 812642.3258 587771.7608 565431.1997 581450.2128 759633.35 542833.1184 1.140743125 1.254292859 1.729353282 0.898848017 1.497038958 1.082785373 1.041629887 1.071139901 1.399386523 1 19.05014922 -6.306979125 24.96656359 1.118599622 1.302407045 0.14281393 0.226680699 889.6069287 487712.7048 0.077750883 0.068570122 4.93E-07 6.306979125 0.183807423 TPPTAALSAPPPLISTLGGRPVS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TPPTAALSAPPPLISTLGGRPVSPR 25 1 A0A2R8Y568;A0A024RDL5;A0A2R8Y522;A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-5;Q8WXX7-2;Q8WXX7 A0A2R8Y568 AUTS2 Autism susceptibility gene 2 protein 1 0 TPPTAALSAPPPLIS(0.002)T(0.003)LGGRPVS(0.995)PR;TPPTAALSAPPPLIS(0.022)T(0.028)LGGRPVS(0.95)PR ; 109.33 0.00018028 1759870000 136049 169555 184445 142895 189226 174231 197524 181442 158221 170656 TRUE FALSE FALSE 166312.6307 189382.9823 252678.8809 150700.992 170385.995 183353.4657 155321.3838 136943.065 189974.5034 128114.5999 1.298155174 1.478231072 1.972287945 1.176298347 1.329949867 1.43116761 1.212362868 1.068910687 1.482848197 1 16.96707537 -5.360459703 20.80744061 1.256119682 1.573181452 0.353688618 0.209855011 12.20920096 2559.676741 0.058735969 0.087119468 4.36E-06 5.360459703 0.317061769 TPPTAALSAPPPLISTLGGRPVS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TPPTAALSAPPPLISTLGGRPVSPR 25 1 A0A2R8Y568;A0A024RDL5;A0A2R8Y522;A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-5;Q8WXX7-2;Q8WXX7 A0A2R8Y568 AUTS2 Autism susceptibility gene 2 protein 1 0 TPPTAALSAPPPLISTLGGRPVS(0.999)PR;TPPTAALSAPPPLIS(0.026)T(0.034)LGGRPVS(0.939)PR ; 157.2 4.33E-10 2340000000 202992 208777 179426 75761 254217 185987 184604 202157 157683 209113 TRUE FALSE FALSE 188763.3091 192232.7502 248904.5524 176375.4367 222330.7334 163041.8149 138414.1267 156130.2642 171351.0894 156749.7437 1.204233606 1.226367238 1.587910427 1.125203988 1.418380204 1.040140871 0.883026175 0.996047971 1.093150683 1 17.25810356 -6.362327724 5.567931759 0.989548632 1.311793362 0.594492238 0.128216443 0.160957731 7.269696045 0.045056268 0.0395748 4.34E-07 6.362327724 0.322244729 TPQASTYSYETSDLCYT(ph)AEKKSPSEAR ddPTM_HeLa_A485_30min_R1 1 TPQASTYSYETSDLCYTAEKKSPSEAR 27 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPQASTYSYET(0.002)SDLCYT(0.972)AEKKS(0.019)PS(0.006)EAR 255.87 3.13E-62 464780000 136830 99192 70866 229010 192270 159000 309200 317550 138250 329850 TRUE FALSE FALSE 167267.3614 110791.6415 97082.28238 241520.2364 173126.9237 167324.9941 243136.8941 239670.3646 165995.5069 247624.4654 0.675488026 0.447417994 0.392054485 0.975348845 0.699151125 0.675720769 0.981877512 0.967878373 0.670351803 1 17.91779434 -5.258906929 24.99887536 0.843150546 0.499229943 0.558001124 0.141684978 170.6967941 1685010.753 0.039512994 0.064598754 5.51E-06 5.258906929 -0.343920603 TPQASTYSYETSDLCYTAEKKS(ph)PSEAR ddPTM_HeLa_A485_30min_R1 3 TPQASTYSYETSDLCYTAEKKSPSEAR 27 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPQASTYSYETSDLCYT(0.128)AEKKS(0.77)PS(0.101)EAR;TPQASTYSYETSDLCYT(0.002)AEKKS(0.817)PS(0.181)EAR;TPQASTYSYETSDLCYTAEKKS(0.999)PS(0.001)EAR ;; 422.09 8.38E-224 9210000000 857333 704643 453816 1417706 1486481 1198766 2222800 2119620 865353 2314350 TRUE FALSE FALSE 1048043.768 787044.8693 621701.4233 1495151.689 1338481.732 1261531.534 1747880.621 1599779.872 1039021.41 1737425.137 0.603216648 0.452994982 0.357829186 0.860556036 0.770382391 0.726092599 1.006017804 0.92077629 0.5980237 1 20.72851939 -5.269943243 24.80068962 0.836200662 0.469511741 0.630781012 0.129314046 348.0303758 1014996.439 0.036403121 0.054982472 5.37E-06 5.269943243 -0.366688921 TPQASTYSYETSDLCYTAEKKS(ph)PSEAR ddPTM_HeLa_A486_30min_R1 5 TPQASTYSYETSDLCYTAEKKSPSEAR 27 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPQASTYSYETSDLCYT(0.006)AEKKS(0.987)PS(0.007)EAR;TPQASTYSYETSDLCYT(0.001)AEKKS(0.999)PSEAR;TPQASTYSYETS(0.001)DLCYT(0.046)AEKKS(0.898)PS(0.055)EAR;TPQASTYSYETSDLCYT(0.162)AEKKS(0.698)PS(0.14)EAR;TPQASTYSYETSDLCYTAEKKS(0.833)PS(0.166)EAR ;;;; 375.83 2.89E-167 8616750000 1295471 1471218 768857 1336774 1980247 2002932 3262360 3140450 1138036 2798804 TRUE FALSE FALSE 1204665.173 1354633.328 1066579.021 3112077.429 1731865.956 1755830.614 2446083.022 2425438.091 1236681.877 2097965.261 0.574206444 0.645689113 0.50838736 1.483378913 0.825497918 0.836920728 1.165931137 1.156090682 0.58946728 1 21.00055936 -5.197929555 24.99959589 1.006515229 0.583053174 0.429642496 0.228092842 207.3149585 81605.46472 0.060524329 0.104831201 6.34E-06 5.197929555 -0.423462056 TPQEAIMDGTEIAVS(ph)PR ddPTM_HeLa_A485_30min_R1 4 TPQEAIMDGTEIAVSPR 17 0 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 0 TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR ;;; 192.94 3.66E-18 969450000 477100 660860 681410 516005 770710 640370 703040 832160 620110 636560 TRUE FALSE FALSE 583229.249 738141.8283 933491.9148 544193.0466 693975.4063 673898.783 552829.7607 628071.4552 744560.389 477877.307 1.220458139 1.544626241 1.953413358 1.138771477 1.452204145 1.410192058 1.156844555 1.314294372 1.55805764 1 18.86628073 -5.301254344 24.99997921 1.309359518 1.570012894 0.244648456 0.225907169 771.0080181 484117.465 0.063181695 0.09371506 5.00E-06 5.301254344 0.260653375 TPQEAIMDGTEIAVS(ph)PR ddPTM_HeLa_A486_30min_R1 4 TPQEAIMDGTEIAVSPR 17 0 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 0 TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR ;;; 141.6 9.23E-08 802567000 521297 522168 492584 182150 631895 502634 544526 570403 447263 520208 TRUE FALSE FALSE 484756.7723 480789.506 683325.7167 424054.4054 552636.8369 440624.1275 408279.8354 440534.6887 486032.117 389944.5308 1.243142893 1.232968969 1.752366459 1.087473658 1.4172191 1.129966169 1.047020289 1.129736806 1.246413473 1 18.57290939 -6.281908788 15.96584828 1.114755454 1.348461526 0.319799329 0.172034451 10.5814808 8251.556968 0.059589673 0.052866398 5.23E-07 6.281908788 0.233706072 TPQGPVSATVEVSS(ph)PTGFAQSQVLEDVSQAAR ddPTM_HeLa_A485_30min_R1 1 TPQGPVSATVEVSSPTGFAQSQVLEDVSQAAR 32 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 TPQGPVSATVEVS(0.127)S(0.853)PT(0.019)GFAQS(0.001)QVLEDVSQAAR 155.15 4.59E-10 109760000 15268 28400 26109 21799 32173 34610 29197 28473 20740 25436 TRUE FALSE FALSE 18664.31393 31721.13295 35767.80559 22989.82417 28969.74315 36422.12608 22958.82243 21489.95211 24902.32776 19095.27331 0.977431096 1.6612034 1.873123521 1.203953659 1.517115921 1.907389618 1.202330129 1.125406887 1.304109522 1 14.22092795 -6.963345348 24.81022754 1.161628263 1.532740592 0.303701787 0.271509729 196.4428095 132964.7093 0.113572726 0.07657048 1.09E-07 6.963345348 0.37111233 TPQGPVSATVEVSS(ph)PTGFAQSQVLEDVSQAAR ddPTM_HeLa_A486_30min_R1 1 TPQGPVSATVEVSSPTGFAQSQVLEDVSQAAR 32 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 TPQGPVSATVEVS(0.027)S(0.872)PT(0.102)GFAQSQVLEDVSQAAR 258.89 9.29E-64 82868000 39015 32634 28638 12980 43137 36653 40597 36602 36896 42045 TRUE FALSE FALSE 36280.24997 30047.96299 39727.40055 30218.09597 37726.35522 32131.12552 30439.20121 28268.52362 40094.17499 31516.65833 1.1511452 0.953399395 1.26052071 0.958797587 1.197029039 1.019496584 0.965813091 0.896939114 1.272158189 1 14.94382696 -6.414618088 17.66727489 1.0202618 1.097606954 0.072677464 0.127041023 8.180245352 1316.610494 0.042497112 0.037478489 3.85E-07 6.414618088 0.077345154 TPQMHGTEMANS(ph)PQPPPLS(ph)PHPCDVVDEGVTK ddPTM_HeLa_A486_30min_R1 2 TPQMHGTEMANSPQPPPLSPHPCDVVDEGVTK 32 0 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 2 0 T(0.001)PQMHGT(0.006)EMANS(0.993)PQPPPLS(1)PHPCDVVDEGVTK;TPQMHGTEMANS(1)PQPPPLS(1)PHPCDVVDEGVTK ; 173.21 4.70E-15 483250000 339009 351015 246235 51421 371208 356850 415690 421610 323817 343829 TRUE FALSE FALSE 315246.2197 323199.293 341583.7864 119710.6867 324647.6313 312825.4752 311679.9653 325618.6067 351885.7183 257731.9804 1.22315523 1.254013151 1.32534498 0.464477425 1.259632703 1.213762742 1.209318164 1.263400088 1.365316472 1 17.97551204 TPQS(ph)PAPCVLLR ddPTM_HeLa_A486_30min_R1 1 TPQSPAPCVLLR 12 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 T(0.001)PQS(0.999)PAPCVLLR 97.273 0.0013816 468130000 235340 269450 221830 72970 327620 218510 211080 246100 202420 287700 TRUE FALSE FALSE 218843.8813 248097.8007 307728.5168 169877.8477 286526.8447 191552.4578 158265.5514 190068.4023 219965.9286 215658.0474 1.014772618 1.150422178 1.426928049 0.787718565 1.328616521 0.888223093 0.73387269 0.881341571 1.019975518 1 17.71838603 -6.301155932 21.89893411 0.886590361 1.138357851 0.307912878 0.176591095 147.2653325 81198.14433 0.060691334 0.053526991 5.00E-07 6.301155932 0.25176749 TPQS(ph)PTLPPAK ddPTM_HeLa_A485_30min_R1 2 TPQSPTLPPAK 11 0 P78310-7;P78310-2;P78310-6;P78310 P78310-7 CXADR Coxsackievirus and adenovirus receptor 1 0 T(0.017)PQS(0.971)PT(0.012)LPPAK;T(0.033)PQS(0.949)PT(0.018)LPPAK ; 85.845 0.0034128 651820000 514850 472640 286740 689690 344150 527040 662710 555720 388310 1230280 TRUE FALSE FALSE 629376.6063 527911.1366 392817.0582 727366.0183 309885.2176 554634.9994 521116.5947 419428.7987 466240.2552 923593.8376 0.681443055 0.57158365 0.425313641 0.787538839 0.335521097 0.600518298 0.564227016 0.454126892 0.50481092 1 19.81689902 -10.58911321 2.827276419 1.031353479 0.544531753 0.551974966 0.122352176 27547967.18 27846831.2 6455316.224 0.028781596 2.58E-11 10.58911321 -0.486821726 TPQS(ph)PTLPPAK ddPTM_HeLa_A486_30min_R1 1 TPQSPTLPPAK 11 0 P78310-7;P78310-2;P78310-6;P78310 P78310-7 CXADR Coxsackievirus and adenovirus receptor 1 0 T(0.059)PQS(0.936)PT(0.005)LPPAK 100.02 0.0013922 507820000 391290 419860 285470 155030 489860 483640 462880 419210 481660 701950 TRUE FALSE FALSE 363862.5916 386588.7645 396011.6292 360917.6748 428417.191 423973.4141 347062.5282 323765.0343 523410.6766 526177.1511 0.69152108 0.734712185 0.752620345 0.685924263 0.814207136 0.805761735 0.659592549 0.615315647 0.994742314 1 19.00518908 -7.776550046 24.98547524 0.997371532 0.724392775 0.782102042 0.058533684 127.4398324 210715.4475 0.059178743 0.015521775 1.67E-08 7.776550046 -0.272978757 TPRLCPYDCDFFNKVLGK ddPTM_HeLa_A485_30min_R1 1 TPRLCPYDCDFFNKVLGK 18 2 H9KVB3;Q6ZRI0 H9KVB3 OTOG Otogelin 0 0 83.106 0.010012 21481000 14714 8106.5 11186 27809 24902 12686 19293 14639 16884 41878 FALSE FALSE TRUE 17987.07854 9054.484658 15324.16689 29328.13525 22422.66944 13350.21934 15170.89294 11048.7623 20272.46393 31438.58531 0.57213384 0.288005474 0.487431821 0.932870705 0.713221324 0.424644405 0.482556476 0.351439551 0.644827486 1 14.94024868 -8.021880046 23.08177724 1.000000012 0.53380961 0.395478655 0.174149477 720.876109 760470.0503 0.183755262 0.047445405 9.51E-09 8.021880046 -0.466190402 TPRLCPYDCDFFNKVLGK ddPTM_HeLa_A486_30min_R1 1 TPRLCPYDCDFFNKVLGK 18 2 H9KVB3;Q6ZRI0 H9KVB3 OTOG Otogelin 0 0 76.85 0.031534 45682000 24940 66364 52976 30594 89773 88800 93932 93623 64887 61330 FALSE FALSE TRUE 23191.83479 61105.07495 73489.72595 71224.37814 78512.83324 77844.75885 70429.22009 72307.08668 70511.4574 45972.56881 0.504471153 1.329163815 1.598556005 1.549279929 1.707819147 1.693287125 1.53198357 1.572831115 1.533772405 1 15.48848566 -4.264420205 2.552102106 1.55743221 0.282799372 0.720180558 0.188854553 0.231239772 1.934613689 0.045361836 0.635314089 5.44E-05 4.264420205 -1.274632837 TPRT(ph)PQLK ddPTM_HeLa_A485_30min_R1 2 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.057)PRT(0.943)PQLK;T(0.254)PRT(0.746)PQLK ; 97.734 0.0031152 3820900000 494920 982600 861290 572390 1448150 1163300 1635990 2442800 856020 953550 TRUE FALSE FALSE 605013.2465 1097506.523 1179917.012 603658.2163 1303967.101 1224208.589 1286447.372 1843699.47 1027815.362 715847.5338 0.84517054 1.533156812 1.648279775 0.843277636 1.821570991 1.710152695 1.797096883 2.575547701 1.435802058 1 19.44929282 -5.796840371 24.99393284 1.805165831 1.270792128 0.222803928 0.443037957 244.4838494 172610.0785 0.133989213 0.151935056 1.60E-06 5.796840371 -0.534373703 TPRT(ph)PQLK ddPTM_HeLa_A486_30min_R1 2 TPRTPQLK 8 1 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.275)PRT(0.725)PQLK;T(0.308)PRT(0.692)PQLK ; 82.171 0.0089049 1815060000 919230 805750 1015500 520450 1737390 829500 1375430 1579450 628050 992610 TRUE FALSE FALSE 854796.7239 741899.4355 1408728.796 1211633.902 1519470.346 727164.7237 1031282.866 1219843.714 682489.8797 744053.9952 1.148836952 0.997104297 1.893315277 1.62842201 2.042150644 0.977301014 1.386032294 1.639455902 0.917258538 1 19.50504779 -7.770448677 24.99137156 0.958628868 1.46873936 0.263802226 0.337677428 302.2597157 838423.2052 0.321916224 0.087964689 1.70E-08 7.770448677 0.510110492 TPRT(ph)PRT(ph)PQLK ddPTM_HeLa_A485_30min_R1 1 TPRTPRTPQLK 11 2 Q6PKG0;Q6PKG0-3;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.455)PRT(0.545)PRT(1)PQLK 64.675 0.034177 734700000 66563 97704 106650 103840 319420 175890 334420 535140 159990 228330 TRUE FALSE FALSE 81369.70971 109129.6329 146104.2731 109512.5163 287617.4232 185099.3284 262968.435 403896.0759 192098.5255 171411.5331 0.474703821 0.636652802 0.852359643 0.638886511 1.677935073 1.079853409 1.534135016 2.356294636 1.120686117 1 17.38710466 -5.755693081 24.93272234 1.513849818 0.664058438 0.524180413 0.376393205 105.9546579 459725.6925 0.11280345 0.141620154 1.76E-06 5.755693081 -0.84979138 TPS(ph)ADLFHYDSMNAVNWGMR ddPTM_HeLa_A485_30min_R1 1 TPSADLFHYDSMNAVNWGMR 20 0 A0A0C4DGA7;O94929-2;O94929-3;O94929;A0A0A0MRD5;O94929-4 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 T(0.19)PS(0.81)ADLFHYDSMNAVNWGMR 296.78 5.41E-87 92153000 53487 41199 48583 39588 63262 50778 90354 81367 40243 68980 TRUE FALSE FALSE 65384.99862 46016.86467 66555.87341 41750.5922 56963.41315 53436.65756 71049.12978 61411.61567 48319.40097 51784.55548 1.262635124 0.888621409 1.285245626 0.806236373 1.100007765 1.031903375 1.372013897 1.185906012 0.933085174 1 15.66023426 TPS(ph)ASNDDQQE ddPTM_HeLa_A485_30min_R1 1 TPSASNDDQQE 11 0 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 TPS(0.999)AS(0.001)NDDQQE 194.06 3.53E-11 213090000 224010 264170 210280 236830 236370 216050 301070 244110 232150 309510 TRUE FALSE FALSE 273840.2517 295062.3835 288071.3225 249767.4232 212836.1729 227362.0439 236743.935 184241.6398 278740.3756 232354.8531 1.178543284 1.26987829 1.239790427 1.074939558 0.915996245 0.978512137 1.018889564 0.792932178 1.199632252 1 17.82597025 -5.427075882 3.293405968 0.975853869 1.233492118 0.556236479 0.097373048 0.169870392 3.484332307 0.027207681 0.041604973 3.74E-06 5.427075882 0.25763825 TPS(ph)EADRWLEEVSK ddPTM_HeLa_A485_30min_R1 4 TPSEADRWLEEVSK 14 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 T(0.001)PS(0.999)EADRWLEEVSK;T(0.081)PS(0.919)EADRWLEEVSK;T(0.006)PS(0.994)EADRWLEEVSK;T(0.004)PS(0.996)EADRWLEEVSK ;;; 193.19 2.85E-18 471785000 238945 240862 209579 326071 336658 288672 412956 436017 231045 437292 TRUE FALSE FALSE 292097.4909 269028.7157 287110.9934 343883.4331 303139.1474 303786.4195 324724.5771 329083.1471 277413.6122 328283.1522 0.889773018 0.819502048 0.874583394 1.047520809 0.923407569 0.925379257 0.989160043 1.002436905 0.845043708 1 18.32458119 -5.026102689 22.69620955 0.9600513 0.852738808 0.416047522 0.054898585 199.3594038 173343.3145 0.014354228 0.025018151 9.42E-06 5.026102689 -0.107312492 TPS(ph)EADRWLEEVSK ddPTM_HeLa_A486_30min_R1 3 TPSEADRWLEEVSK 14 1 G3V3Z8;P49757-9;P49757-4;P49757-2;P49757-3;P49757;P49757-8;P49757-7;P49757-6;P49757-5 G3V3Z8 NUMB Protein numb homolog 1 0 T(0.248)PS(0.752)EADRWLEEVSK;T(0.01)PS(0.99)EADRWLEEVSK;T(0.001)PS(0.999)EADRWLEEVSK ;; 187.56 7.13E-18 350182000 214723 217386 152610 117734 261997 246837 323899 312315 188222 275838 TRUE FALSE FALSE 199672.0265 200159.5417 211704.679 274090.7019 229134.8932 216384.7606 242856.0443 241207.6923 204537.2345 206766.3694 0.965689087 0.968046894 1.023883524 1.325605817 1.108182602 1.046518161 1.174543254 1.166571203 0.989219065 1 17.65764202 -5.012631 24.74670219 1.126047111 0.97414224 0.301575854 0.092293091 579.9683848 1136283.611 0.024463705 0.045307679 9.71E-06 5.012631 -0.151904871 TPS(ph)EAER ddPTM_HeLa_A485_30min_R1 4 TPSEAER 7 0 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 T(0.086)PS(0.914)EAER;T(0.05)PS(0.95)EAER;T(0.012)PS(0.988)EAER;T(0.003)PS(0.997)EAER ;;; 131.62 0.0016572 3922340000 2483190 3308560 2378460 3332390 2943330 2879540 3471620 3741210 2787370 3868340 TRUE FALSE FALSE 3035567.049 3695467.311 3258351.33 3514430.028 2650281.731 3030308.262 2729880.026 2823672.382 3346769.592 2904034.03 1.045293209 1.272528928 1.12200866 1.210188996 0.912620756 1.043482353 0.940030316 0.97232758 1.152455363 1 21.46962693 -5.751679095 24.99901119 1.000929464 1.167471232 0.474893738 0.081824935 166.9336278 427564.737 0.023165028 0.029529327 1.77E-06 5.751679095 0.166541768 TPS(ph)EAER ddPTM_HeLa_A486_30min_R1 4 TPSEAER 7 0 A0A0C4DGH3;Q9Y6R0 A0A0C4DGH3 NUMBL Numb-like protein 1 0 TPS(1)EAER;T(0.112)PS(0.888)EAER;TPS(1)EAER;T(0.006)PS(0.994)EAER ;;; 141.52 0.0014952 2985470000 2938580 2227270 2436240 1009630 2463560 3242750 2828680 2597240 2819100 3036410 TRUE FALSE FALSE 2732600.717 2050773.014 3379617.373 2350469.664 2154557.333 2842692.475 2120914.345 2005905.149 3063461.858 2276073.172 1.200576831 0.901013657 1.48484566 1.032686336 0.946611629 1.248945996 0.931830475 0.881300818 1.345941728 1 21.11811551 TPS(ph)EIQFHQVK ddPTM_HeLa_A485_30min_R1 1 TPSEIQFHQVK 11 0 Q12851;Q12851-2;C9JCU6 Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 1 0 T(0.082)PS(0.918)EIQFHQVK 136.33 1.49E-05 348190000 272320 335070 269970 326690 392850 391530 483970 513570 305540 415940 TRUE FALSE FALSE 332896.6445 374253.5218 369843.1374 344536.2475 353736.4746 412029.9054 380565.8558 387616.1523 366859.0754 312253.8128 1.066109142 1.198555491 1.184431133 1.103385238 1.132849176 1.319535226 1.218770885 1.241349621 1.174874606 1 18.25235966 -4.257292791 23.88639423 1.185049233 1.066109053 0.127720105 0.081435105 434.6702767 2503727.599 0.019982714 0.15004714 5.53E-05 4.257292791 -0.11894018 TPS(ph)EIQFHQVK ddPTM_HeLa_A486_30min_R1 2 TPSEIQFHQVK 11 0 Q12851;Q12851-2;C9JCU6 Q12851 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 1 0 T(0.006)PS(0.994)EIQFHQVK;T(0.004)PS(0.996)EIQFHQVK ; 135.24 1.79E-05 567180000 739880 985370 989250 250720 1151810 739170 812710 898990 781560 847630 TRUE FALSE FALSE 688018.2327 907285.6925 1372314.093 583688.8307 1007339.25 647978.7207 609361.362 694309.6018 849306.2501 635377.9309 1.082848804 1.4279465 2.159839092 0.91864826 1.585417435 1.01983196 0.959053396 1.092750579 1.336694601 1 19.27725545 -6.082110853 1.639891071 1.083182868 1.476929731 0.194895649 0.328627489 0.608695095 3.28946692 0.133004609 0.138435884 8.28E-07 6.082110853 0.393746863 TPS(ph)FELPDASERPPTYCELVPR ddPTM_HeLa_A485_30min_R1 2 TPSFELPDASERPPTYCELVPR 22 1 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 T(0.138)PS(0.862)FELPDASERPPTYCELVPR;T(0.311)PS(0.687)FELPDAS(0.002)ERPPTYCELVPR ; 147.17 7.99E-10 632290000 68963 126418 137275 61149 120399 97870 99307 112194 94077 92649 TRUE FALSE FALSE 84303.58143 141201.4854 188058.735 64489.41503 108411.6528 102994.3219 78089.24819 84678.24559 112957.391 69553.30938 1.212071463 2.030118864 2.703807147 0.927194056 1.558684321 1.480796856 1.122725128 1.217458182 1.624040495 1 16.08583154 -5.280672285 24.92646734 1.298848413 1.986811277 0.396575503 0.39845099 787.0786156 1020077.466 0.112456849 0.167090359 5.24E-06 5.280672285 0.687962865 TPS(ph)FELPDASERPPTYCELVPR ddPTM_HeLa_A486_30min_R1 2 TPSFELPDASERPPTYCELVPR 22 1 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 T(0.187)PS(0.813)FELPDASERPPTYCELVPR;T(0.015)PS(0.985)FELPDASERPPTYCELVPR ; 129.72 9.31E-07 791330000 83999 89817 79434 27873 117878 96646 97192 96474 93408 96507 TRUE FALSE FALSE 78111.10387 82699.57381 110192.9721 64889.75262 103092.6421 84722.79914 72873.53361 74508.97621 101504.6806 72341.01904 1.079762283 1.143190612 1.523243294 0.896998045 1.425092478 1.171158497 1.00736117 1.029968574 1.403141426 1 16.1425263 -6.527651562 24.89020107 1.109278685 1.218227153 0.058946293 0.194626223 397.0522366 2070590.288 0.071667947 0.055719516 2.97E-07 6.527651562 0.108948467 TPS(ph)FHIK ddPTM_HeLa_A485_30min_R1 1 TPSFHIK 7 0 O60890 O60890 OPHN1 Oligophrenin-1 1 0 T(0.165)PS(0.835)FHIK 69.598 0.015693 47073000 133040 122840 118560 132440 183880 124330 181570 182930 164570 192280 TRUE FALSE FALSE 162634.289 137205.0694 162420.2777 139674.8618 165572.2616 130839.7265 142776.0862 138066.1307 197597.6895 144348.1347 1.126680919 0.950515015 1.125198314 0.967624987 1.1470343 0.906417855 0.989109326 0.956480186 1.36889673 1 17.13919294 -7.728746495 24.99997838 1.184449733 1.019769403 0.244116156 0.114931975 211.3320168 161604.3229 0.071308804 0.026947876 1.87E-08 7.728746495 -0.16468033 TPS(ph)FHIK ddPTM_HeLa_A486_30min_R1 1 TPSFHIK 7 0 O60890 O60890 OPHN1 Oligophrenin-1 1 0 T(0.226)PS(0.774)FHIK 65.465 0.019696 74603000 182220 197900 111570 67756 183510 209670 252570 283270 153690 204330 TRUE FALSE FALSE 169447.319 182217.6833 154772.8919 157739.3922 160492.4646 183803.0472 189374.3146 218775.6047 167011.9729 153164.438 1.106309801 1.189686624 1.010501484 1.029869559 1.047844178 1.200037355 1.236411774 1.42837076 1.090409596 1 17.22472184 -6.344757043 5.00352554 1.223131574 1.077002536 0.175011113 0.114438986 0.310708229 13.5042797 0.040522301 0.035677647 4.52E-07 6.344757043 -0.146129038 TPS(ph)FLK ddPTM_HeLa_A485_30min_R1 4 TPSFLK 6 0 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 T(0.059)PS(0.941)FLK;T(0.396)PS(0.604)FLK;T(0.086)PS(0.914)FLK;T(0.156)PS(0.844)FLK ;;; 110.67 0.0088791 996800000 1956540 1471950 1319290 2606640 2150100 1544170 2368240 2023630 1717850 3595370 TRUE FALSE FALSE 2391765.573 1644081.748 1807350.271 2749034.143 1936028.495 1625020.353 1862246.177 1527331.57 2062606.738 2699110.427 0.886131056 0.609119854 0.669609607 1.018496359 0.717283915 0.602057751 0.689948125 0.565864795 0.764180197 1 21.36405257 -8.029954722 23.02542095 1.000000007 0.716002972 0.290867759 0.130471315 1701.104201 1307594.789 0.129559941 0.033452233 9.33E-09 8.029954722 -0.283997035 TPS(ph)FLK ddPTM_HeLa_A486_30min_R1 5 TPSFLK 6 0 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 T(0.131)PS(0.869)FLK;T(0.383)PS(0.617)FLK;T(0.048)PS(0.952)FLK;T(0.189)PS(0.811)FLK;T(0.197)PS(0.803)FLK ;;;; 93.162 0.014659 1701610000 3792400 4260110 2142840 1644440 3342070 4576760 5016860 4762370 3136650 4322280 TRUE FALSE FALSE 3526572.344 3922523.369 2972605.035 3828339.425 2922876.417 4012125.884 3761588.565 3678082.313 3408537.348 3239952.955 1.088464059 1.21067294 0.917484012 1.181603399 0.90213545 1.238328439 1.161000983 1.135227074 1.052032976 1 21.62754143 -6.313096179 24.99999663 1.128499663 1.067267531 0.05771965 0.109231017 1027.281003 497163.1737 0.036939271 0.032577399 4.86E-07 6.313096179 -0.061232132 TPS(ph)FLKK ddPTM_HeLa_A485_30min_R1 2 TPSFLKK 7 1 P35611;P35611-3;P35612;Q9UEY8-2;Q9UEY8 P35611;Q9UEY8-2 ADD1;ADD2;ADD3 Alpha-adducin;Beta-adducin;Gamma-adducin 1 0 T(0.349)PS(0.651)FLKK;T(0.279)PS(0.721)FLKK ; 67.334 0.013768 12024600000 9437900 6737800 4834660 12027400 11870500 8921300 14945300 14899600 8366600 18059800 TRUE FALSE FALSE 11537328.29 7525727.099 6623201.921 12684426.41 10688631.34 9388405.473 11752114.56 11245449.74 10045699.88 13557824.23 0.850971963 0.55508369 0.488515105 0.935579795 0.788373648 0.692471396 0.8668142 0.829443541 0.740952214 1 23.69262234 -13.99999997 0.062333083 1.960016092 0.359447295 0.290430301 0.128349205 472.7678836 2.14126237 67.57892854 10.501604 1.00E-14 13.99999997 -1.600568798 TPS(ph)GEFLER ddPTM_HeLa_A485_30min_R1 3 TPSGEFLER 9 0 B3KT28;Q9UNN5;B1ANM7;Q9UNN5-2 B3KT28 FAF1 FAS-associated factor 1 1 0 T(0.014)PS(0.986)GEFLER;T(0.011)PS(0.989)GEFLER;T(0.47)PS(0.53)GEFLER ;; 69.672 0.015161 307273000 211884 237478 254546 288297 336029 234640 298637 290587 267830 378445 TRUE FALSE FALSE 259016.8648 265248.9863 348713.1579 304045.9351 302572.7729 246925.3876 234830.7653 219320.0826 321581.0243 284105.6263 0.911692134 0.933628066 1.227406731 1.070186251 1.065000989 0.869132339 0.826561474 0.7719667 1.131906568 1 18.11606788 -6.258292735 24.71926929 0.899826836 1.04749798 0.187216678 0.12294377 356.6595403 2801837.334 0.042577054 0.040862618 5.52E-07 6.258292735 0.147671144 TPS(ph)GEFLER ddPTM_HeLa_A486_30min_R1 3 TPSGEFLER 9 0 B3KT28;Q9UNN5;B1ANM7;Q9UNN5-2 B3KT28 FAF1 FAS-associated factor 1 1 0 T(0.148)PS(0.852)GEFLER;T(0.015)PS(0.985)GEFLER;T(0.128)PS(0.872)GEFLER ;; 152.69 5.66E-05 396070000 332489 373420 314734 145364 453620 425540 433500 424320 334152 419340 TRUE FALSE FALSE 309183.2381 343828.8392 436607.4337 338414.7383 396722.7498 373041.2014 325033.7149 327711.5988 363116.5644 314334.5346 0.983612057 1.093830939 1.388989709 1.07660693 1.262103607 1.186764928 1.034037559 1.042556776 1.155191443 1 18.26194126 -6.757254354 24.9496365 1.061492836 1.172602542 0.18553154 0.109473796 181.9447504 1084698.295 0.043451007 0.032425755 1.75E-07 6.757254354 0.111109707 TPS(ph)IDLQR ddPTM_HeLa_A485_30min_R1 1 TPSIDLQR 8 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 T(0.009)PS(0.991)IDLQR 103.87 0.0015733 45706000 74831 93523 91400 86872 121800 90986 114640 120210 91626 129850 TRUE FALSE FALSE 91476.89779 104459.7013 125212.6635 91617.59739 109673.1643 95749.88627 90146.22748 90728.30902 110014.4978 97480.78471 0.938409534 1.071592741 1.284485592 0.939852892 1.125074697 0.982243696 0.924758943 0.930730187 1.128576243 1 16.57283024 -6.282529475 22.90896992 0.984650987 1.076343196 0.119093432 0.105274053 560.4119835 608740.0589 0.037185927 0.032840149 5.22E-07 6.282529475 0.091692208 TPS(ph)IDLQR ddPTM_HeLa_A486_30min_R1 1 TPSIDLQR 8 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 T(0.117)PS(0.883)IDLQR 66.664 0.014075 0 59638 62028 49196 21421 79879 64783 56840 75048 52021 69506 TRUE FALSE FALSE 55457.68417 57112.67538 68246.00871 49869.17056 69859.83098 56790.73213 42618.03081 57961.20869 56530.22217 52101.24519 1.064421473 1.09618638 1.309872892 0.9571589 1.340847627 1.090007195 0.81798488 1.112472619 1.085007123 1 15.66903023 -6.527594906 24.9963981 1.004775609 1.154976749 0.235120414 0.127388614 197.8408671 1048570.537 0.047119638 0.036634881 2.97E-07 6.527594906 0.15020114 TPS(ph)IQPSLLPHAAPFAK ddPTM_HeLa_A486_30min_R1 1 TPSIQPSLLPHAAPFAK 17 0 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;H0YF36 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 T(0.134)PS(0.866)IQPSLLPHAAPFAK 179.03 1.20E-17 504860000 1096600 1088100 756330 79283 1156700 955790 1173900 1288700 870560 854140 TRUE FALSE FALSE 1019734.003 1001874.993 1049201.231 184574.8307 1011615.9 837874.3476 880177.8038 995291.1421 946020.8417 640257.7845 1.592692861 1.564799394 1.638716868 0.288282056 1.580013433 1.308651559 1.374724096 1.554516269 1.47756242 1 19.28829336 TPS(ph)ISKK ddPTM_HeLa_A485_30min_R1 1 TPSISKK 7 1 Q92619;K7EM85;K7EM55 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 T(0.328)PS(0.667)IS(0.005)KK 57.267 0.024839 552340000 486410 349970 215010 616370 562850 516340 884840 824690 448440 949930 TRUE FALSE FALSE 594610.2264 390895.9472 294551.1463 650040.7324 506810.6777 543374.764 695786.7055 622433.4844 538437.7947 713129.9332 0.833803489 0.54814127 0.413039942 0.911531969 0.710684903 0.761957588 0.975680129 0.872819181 0.755034629 1 19.44380544 -5.769251774 1.195718388 0.874399022 0.613265264 0.341977798 0.142741753 0.538166606 1.625367379 0.06007579 0.087057182 1.70E-06 5.769251774 -0.261133758 TPS(ph)ISKK ddPTM_HeLa_A486_30min_R1 1 TPSISKK 7 1 Q92619;K7EM85;K7EM55 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 T(0.281)PS(0.715)IS(0.004)KK 57.174 0.024942 246790000 311490 241190 112570 146820 220260 353540 458980 465630 210500 430900 TRUE FALSE FALSE 289656.1595 222077.226 156160.1187 341804.3799 192632.937 309923.8293 344138.3494 359616.2136 228746.3095 322999.8353 0.896768753 0.687545942 0.483468106 1.058218434 0.596387106 0.959516989 1.065444349 1.113363458 0.70819327 1 18.3011739 -6.383201278 7.232866634 0.985215396 0.744706989 0.285174967 0.177449424 0.33377739 18.38708042 0.061567676 0.054162658 4.14E-07 6.383201278 -0.240508406 TPS(ph)PAPK ddPTM_HeLa_A485_30min_R1 1 TPSPAPK 7 0 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 0 T(0.229)PS(0.771)PAPK 109.11 0.0031059 1962200000 1869300 1653500 1325000 2197900 2097500 1837000 2590800 2541500 1675600 2888100 TRUE FALSE FALSE 2285119.336 1846862.441 1815172.638 2317965.712 1888665.535 1933182.479 2037254.415 1918193.14 2011877.55 2168149.822 1.053949 0.851814954 0.837198896 1.069098495 0.871095492 0.891627719 0.939628062 0.884714295 0.927923675 1 21.04803302 -8.048362097 20.97465427 1.000000002 0.920952581 0.080123928 0.075124972 4004.028351 1736549.323 0.070020332 0.018079172 8.95E-09 8.048362097 -0.079047421 TPS(ph)PAPK ddPTM_HeLa_A486_30min_R1 2 TPSPAPK 7 0 Q63ZY6;Q96P11-2;Q3KNT7-3;Q63ZY6-6 Q63ZY6 NSUN5P2;NSUN5 Putative methyltransferase NSUN5C;Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 0 T(0.402)PS(0.598)PAPK;T(0.275)PS(0.725)PAPK ; 97.635 0.0050892 4539400000 4538600 3942300 2505470 1847020 3732100 4356700 5360500 4468100 3512400 5273100 TRUE FALSE FALSE 4220467.577 3629897.79 3475655.083 4299955.903 3263985.218 3819214.65 4019246.202 3450811.168 3816857.66 3952681.438 1.067747969 0.918338057 0.87931576 1.087857944 0.825764805 0.966233862 1.016840407 0.873030428 0.96563756 1 21.91440026 -4.253384467 24.08618965 0.945253114 1.067748071 0.19205508 0.073402688 976.5505359 2920013.522 0.017303737 0.182381533 5.58E-05 4.253384467 0.122494957 TPS(ph)PARPALR ddPTM_HeLa_A485_30min_R1 4 TPSPARPALR 10 1 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 1 0 T(0.259)PS(0.741)PARPALR;T(0.207)PS(0.793)PARPALR;T(0.135)PS(0.865)PARPALR;T(0.44)PS(0.56)PARPALR ;;; 107.39 0.00042421 2176230000 899573 1266958 1197296 961803 1419698 1154241 1309019 1426357 1059271 1323004 TRUE FALSE FALSE 1099679.91 1415117.717 1640225.614 1014343.862 1278347.882 1214675.274 1029336.397 1076540.709 1271856.973 993203.4509 1.107205084 1.42480145 1.651449774 1.021285077 1.287095691 1.222987368 1.036380206 1.08390754 1.280560365 1 19.92172975 -5.281461924 24.99434146 1.142792483 1.397517089 0.367450972 0.156743979 864.6580785 1079359.153 0.044417857 0.065972365 5.23E-06 5.281461924 0.254724607 TPS(ph)PARPALR ddPTM_HeLa_A486_30min_R1 1 TPSPARPALR 10 1 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 1 0 T(0.474)PS(0.526)PARPALR 109.15 0.00038331 967180000 488970 520690 438600 153170 557730 465620 524820 515300 413780 454760 TRUE FALSE FALSE 454695.728 479428.6281 608437.6661 356587.5008 487774.3028 408176.5385 393504.485 397977.4389 449646.7836 340885.136 1.333867863 1.406422802 1.784875906 1.046063507 1.430905168 1.197401985 1.154360937 1.167482524 1.319056586 1 18.37892617 -5.277754052 24.9850487 1.203998452 1.498192289 0.458010666 0.158976853 735.0494717 1125687.412 0.043814144 0.065211388 5.28E-06 5.277754052 0.294193838 TPS(ph)PPPPIPEDIALGK ddPTM_HeLa_A485_30min_R1 3 TPSPPPPIPEDIALGK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.157)PS(0.843)PPPPIPEDIALGK;T(0.202)PS(0.798)PPPPIPEDIALGK;T(0.057)PS(0.943)PPPPIPEDIALGK ;; 113.59 0.00015144 75707000 80524 82206 55651 95200 91557 66698 109840 101259 64804 143442 TRUE FALSE FALSE 98436.286 91819.2766 76238.62073 100400.5349 82441.2636 70190.20415 86371.78669 76425.07148 77809.56838 107684.5493 0.914117083 0.852668997 0.707981054 0.932357851 0.765581174 0.65181314 0.802081518 0.709712508 0.722569477 1 16.71645174 -4.551850872 6.553656877 0.776300237 0.89994284 0.133480127 0.101431466 0.25393412 35.98661496 0.024944558 0.070183821 2.81E-05 4.551850872 0.123642603 TPS(ph)PSPPCSSSPSPSGR ddPTM_HeLa_A485_30min_R1 1 TPSPSPPCSSSPSPSGR 17 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 TPS(0.998)PS(0.001)PPCSSSPSPSGR 138.81 8.86E-08 0 25650 30748 33391 34387 35142 30902 34186 38755 32095 42312 TRUE FALSE FALSE 31355.75401 34343.71113 45743.72042 36265.47474 31643.13909 32519.98094 26881.88183 29250.27548 38536.17211 31764.39709 0.987135185 1.081201416 1.440094086 1.14170197 0.996182581 1.02378713 0.846289692 0.920850958 1.213187582 1 14.95512302 -5.724224797 4.751419259 0.988763806 1.179822235 0.245967179 0.138429419 0.269937192 13.92882336 0.043963512 0.055559362 1.89E-06 5.724224797 0.191058429 TPS(ph)PSPPCSSSPSPSGR ddPTM_HeLa_A486_30min_R1 1 TPSPSPPCSSSPSPSGR 17 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 T(0.001)PS(0.999)PS(0.001)PPCSSSPSPSGR 100.41 0.00041741 97164000 22404 23266 16576 8066.6 26452 20722 22691 21586 16959 20105 TRUE FALSE FALSE 20833.59529 21422.31743 22994.67112 18779.45246 23134.1435 18165.53033 17013.4718 16671.33902 18429.01977 15070.57714 1.382401955 1.421466294 1.525798973 1.246100417 1.535053588 1.205363946 1.128919725 1.106217689 1.222847646 1 13.87944705 -6.436460382 4.765245172 1.127865672 1.417295017 0.722186283 0.09088328 0.120309828 4.704140514 0.031404031 0.027150871 3.66E-07 6.436460382 0.289429345 TPS(ph)PSQPKK ddPTM_HeLa_A485_30min_R1 3 TPSPSQPKK 9 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 T(0.008)PS(0.992)PSQPKK;T(0.438)PS(0.559)PS(0.003)QPKK;T(0.006)PS(0.99)PS(0.004)QPKK ;; 89.403 0.0021503 747810000 1083420 1299030 941280 1289520 1453000 1403140 1808870 2092270 1201570 2006750 TRUE FALSE FALSE 1324423.041 1450940.258 1289498.642 1359963.212 1308334.218 1476606.241 1422390.147 1579137.502 1442714.078 1506504.156 0.879136666 0.963117328 0.855954254 0.90272782 0.868457092 0.98015411 0.944166096 1.048213173 0.957656885 1 20.52277322 -6.308673329 7.803156418 0.986711274 0.896149679 0.604848672 0.037221816 0.212994835 31.95696886 0.012803936 0.011329592 4.91E-07 6.308673329 -0.090561595 TPS(ph)PSQPKK ddPTM_HeLa_A486_30min_R1 3 TPSPSQPKK 9 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 T(0.008)PS(0.973)PS(0.019)QPKK;T(0.147)PS(0.853)PS(0.001)QPKK;T(0.04)PS(0.959)PSQPKK ;; 107.09 0.00063435 911090000 1814620 1573350 780610 768090 1450250 1605920 2178500 2053440 1245530 2319920 TRUE FALSE FALSE 1687424.509 1448672.016 1082883.097 1788152.337 1268346.122 1407797.918 1633416.258 1585916.538 1353493.543 1738996.932 0.97034358 0.833050358 0.622705583 1.028266528 0.729355008 0.809545947 0.939286452 0.911972016 0.778318534 1 20.72982396 -6.750537862 24.51924643 0.900058589 0.826962651 0.086549887 0.117965943 463.0867702 1041557.084 0.044532686 0.03413832 1.78E-07 6.750537862 -0.073095938 TPS(ph)QIIR ddPTM_HeLa_A485_30min_R1 2 TPSQIIR 7 0 Q01804-5;Q01804-3;Q01804;D6RI06 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 TPS(1)QIIR;T(0.069)PS(0.931)QIIR ; 96.665 0.0053093 303970000 249120 282300 297630 271430 326260 225210 292230 321280 222050 296150 TRUE FALSE FALSE 304535.8845 315312.5293 407735.7224 286257.5336 293776.4088 237001.6474 229792.6732 242485.5763 266613.3982 222325.2552 1.369776386 1.418248813 1.833960438 1.287561925 1.321381183 1.066013158 1.033587808 1.090679401 1.199204283 1 17.76231232 -5.866721759 1.806884741 1.082476524 1.520629403 0.657316043 0.138512826 0.214604398 1.440891604 0.050922991 0.061985849 1.36E-06 5.866721759 0.438152879 TPS(ph)QIIR ddPTM_HeLa_A486_30min_R1 1 TPSQIIR 7 0 Q01804-5;Q01804-3;Q01804;D6RI06 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 T(0.081)PS(0.919)QIIR 66.962 0.024159 94403000 99890 125950 97766 42282 119310 101790 109260 132340 103530 94386 TRUE FALSE FALSE 92888.22683 115969.2633 135623.6135 98434.63281 104345.0273 89232.18472 81921.99237 102209.071 112504.0638 70751.13125 1.312886807 1.639115322 1.916910883 1.391279985 1.474817794 1.261212127 1.157889505 1.444628081 1.59013802 1 16.1104656 -5.493984712 23.56983018 1.341631011 1.629503892 0.295213627 0.207360621 454.2596731 370553.8951 0.05901233 0.087295533 3.21E-06 5.493984712 0.287872881 TPS(ph)SEEIS(ph)PTKFPGLYR ddPTM_HeLa_A485_30min_R1 2 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 T(0.35)PS(0.65)SEEIS(0.998)PT(0.002)KFPGLYR;T(0.483)PS(0.515)S(0.003)EEIS(0.993)PT(0.007)KFPGLYR ; 156.51 1.89E-08 293680000 392900 323370 235990 673040 512220 397290 695730 655170 334630 874250 TRUE FALSE FALSE 480299.2495 361185.3086 323292.5214 709806.471 461221.5783 418091.4901 547081.6019 494488.5302 401787.1716 656315.5644 0.731811457 0.550322632 0.49258701 1.08150181 0.702743624 0.63702815 0.833564876 0.753431058 0.612185957 1 19.32403012 -14 0.223223351 2.43293144 0.679501276 0.22564905 0.157104318 251.7641887 2.520807902 163.2729173 0.302098324 1.00E-14 14 -1.753430165 TPS(ph)SEEIS(ph)PTKFPGLYR ddPTM_HeLa_A486_30min_R1 2 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 2 0 T(0.44)PS(0.56)S(0.002)EEIS(0.995)PT(0.004)KFPGLYR;T(0.446)PS(0.554)SEEIS(0.999)PT(0.001)KFPGLYR ; 137.09 5.67E-06 293362000 509620 455950 229095 321412 443560 571870 766060 723790 368060 839270 TRUE FALSE FALSE 473898.2697 419818.8615 317806.7194 748263.3793 387924.5688 501318.4937 574383.6854 558998.8172 399963.7371 629111.3293 0.753282047 0.66732046 0.505167694 1.1893974 0.616623085 0.796867693 0.913008014 0.888553093 0.63575987 1 19.26295582 -4.30234658 0.04570233 1.43407111 4.43E-13 0.124029066 0.182315196 618.1402307 4.49739279 50.08056856 96.20412571 4.98E-05 4.30234658 -1.43407111 TPS(ph)SEEISPTK ddPTM_HeLa_A485_30min_R1 2 TPSSEEISPTK 11 0 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 T(0.295)PS(0.702)S(0.003)EEISPTK;T(0.004)PS(0.937)S(0.059)EEISPTK ; 100.38 0.00090985 168110000 265430 253290 273330 387530 376540 270180 350370 299210 313550 526110 TRUE FALSE FALSE 324473.9878 282910.0622 374446.1412 408699.7826 339050.3555 284326.207 275510.5872 225828.2784 376476.6089 394960.4593 0.821535372 0.716299709 0.948059818 1.034786579 0.858441263 0.719885245 0.697564986 0.571774397 0.953200757 1 18.5913487 -6.166081364 5.84875253 0.75640724 0.881391472 0.067107809 0.139987146 0.469816181 23.49058245 0.047234018 0.047252249 6.82E-07 6.166081364 0.124984232 TPS(ph)SEEISPTK ddPTM_HeLa_A486_30min_R1 1 TPSSEEISPTK 11 0 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 TPS(0.989)S(0.011)EEISPTK 128.61 4.95E-05 203320000 190150 227170 175730 67157 274410 266330 249040 250250 223370 237580 TRUE FALSE FALSE 176821.4669 209168.2219 243777.3622 156344.8899 239990.939 233472.9124 186727.5579 193273.5379 242731.8914 178088.4216 0.992885811 1.174518927 1.368855763 0.877905978 1.347594284 1.310994338 1.048510376 1.085267286 1.362985248 1 17.4422342 -1.090973144 20.09674224 1.164505583 0.028330422 0 0.171645632 0 0 0.037663961 0 0.081101121 1.090973144 -1.136175161 TPS(ph)SEEISPTKFPGLYR ddPTM_HeLa_A485_30min_R1 3 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 T(0.006)PS(0.992)S(0.002)EEISPTKFPGLYR;T(0.006)PS(0.978)S(0.016)EEISPTKFPGLYR;T(0.005)PS(0.982)S(0.013)EEISPTKFPGLYR ;; 197.1 2.96E-25 4142380000 1104460 984090 767250 1403580 1369970 1224230 1771570 1834190 986690 2037360 TRUE FALSE FALSE 1350143.317 1099170.765 1051087.703 1480254.021 1233570.977 1288328.79 1393059.597 1384352.027 1184709.633 1529483.647 0.882744526 0.7186548 0.687217353 0.967812912 0.806527732 0.842329235 0.910803852 0.905110708 0.774581431 1 20.54461325 -13.99999999 0.070749617 1.557073534 0.634954575 0.276372781 0.083161154 395.2780164 2.006970949 36.00907674 4.380814024 1.00E-14 13.99999999 -0.922118959 TPS(ph)SPCPASK ddPTM_HeLa_A485_30min_R1 1 TPSSPCPASK 10 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 T(0.002)PS(0.658)S(0.339)PCPASK 57.348 0.035162 100430000 288280 289520 243150 334270 395310 320330 467910 470250 311220 479220 TRUE FALSE FALSE 352406.8914 323376.8455 333101.3033 352530.3237 355951.5484 337101.9835 367937.206 354920.4502 373678.9993 359759.2734 0.979563051 0.898870076 0.925900534 0.979906148 0.989415909 0.93702097 1.02273168 0.98654983 1.038691778 1 18.45667235 -6.205966461 0.658009694 1.015055144 0.932311426 0.453801532 0.030460717 0.689089249 0.657114402 0.023076967 0.025801354 6.22E-07 6.205966461 -0.082743718 TPS(ph)SPCPASK ddPTM_HeLa_A486_30min_R1 1 TPSSPCPASK 10 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 TPS(0.606)S(0.393)PCPASK 108.9 0.0008017 118900000 363160 401640 281690 152480 421500 416330 477540 440930 344630 448070 TRUE FALSE FALSE 337704.3594 369812.5837 390767.9119 354981.1459 368631.5397 364967.4375 358054.4411 340539.8644 374502.8059 335870.3556 1.005460452 1.101057529 1.163448651 1.056899307 1.09754116 1.086631885 1.066049549 1.013902712 1.115021912 1 18.35754494 -6.921504773 3.918369284 1.046915822 1.088638079 0.13628517 0.046612149 0.458106095 13.68460395 0.020715 0.013321731 1.20E-07 6.921504773 0.041722257 TPS(ph)SQNLLALLAR ddPTM_HeLa_A485_30min_R1 3 TPSSQNLLALLAR 13 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 T(0.002)PS(0.995)S(0.004)QNLLALLAR;T(0.003)PS(0.994)S(0.003)QNLLALLAR;T(0.185)PS(0.78)S(0.035)QNLLALLAR ;; 187.65 2.59E-17 480107000 238876.6 207006.7 203810.7 281875.8 263503 211095.8 333557.1 262724.8 197969.8 353265.5 TRUE FALSE FALSE 292013.8756 231214.3328 279208.7592 297273.9612 237267.7161 222148.4497 262289.9007 198291.1309 237700.523 265202.9122 1.101096037 0.871839343 1.052811814 1.120930229 0.894664821 0.837654639 0.989015914 0.747695903 0.896296805 1 18.01673709 -5.869050267 8.481520884 0.882452232 1.025774486 0.359282401 0.092044179 0.281036456 20.27262291 0.028088132 0.031898946 1.35E-06 5.869050267 0.143322253 TPS(ph)SQNLLALLAR ddPTM_HeLa_A486_30min_R1 2 TPSSQNLLALLAR 13 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 T(0.464)PS(0.528)S(0.008)QNLLALLAR;T(0.331)PS(0.634)S(0.035)QNLLALLAR ; 104.16 0.0004699 231650000 81183.1 78481.4 53089.4 24672.3 84481 89024 98985 89601 70618.1 85343 TRUE FALSE FALSE 75492.58392 72262.24804 73647.03746 57438.36127 73884.60523 78041.12401 74217.90604 69200.80828 76739.33377 63972.55731 1.180077632 1.129581981 1.151228598 0.89785939 1.154942187 1.219915653 1.160152246 1.081726465 1.199566455 1 15.96516554 TPS(ph)TPQSQHFYQMPTPDPLVPSKPMEDR ddPTM_HeLa_A486_30min_R1 1 TPSTPQSQHFYQMPTPDPLVPSKPMEDR 28 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 T(0.074)PS(0.463)T(0.463)PQSQHFYQMPTPDPLVPSKPMEDR 124.9 4.43E-06 150510000 135020 137660 92671 6520.4 151750 109220 96949 114570 104840 69489 TRUE FALSE FALSE 125555.7952 126751.3203 128555.693 15179.82072 132716.1 95745.54687 72691.33478 88484.91205 113927.6156 52088.5021 2.410432057 2.433383859 2.468024378 0.291423637 2.547896266 1.838132083 1.395535134 1.698741728 2.187193162 1 15.66867733 TPS(ph)VTEASPWR ddPTM_HeLa_A485_30min_R1 4 TPSVTEASPWR 11 0 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 T(0.002)PS(0.997)VTEASPWR;T(0.013)PS(0.986)VTEASPWR;T(0.385)PS(0.615)VTEASPWR;T(0.002)PS(0.998)VTEASPWR ;;; 194.48 3.01E-11 930570000 569720 647050 640480 886400 948550 683850 999610 963400 716570 1282250 TRUE FALSE FALSE 696452.2485 722716.8689 877420.2046 934821.7875 854109.0314 719655.3286 786035.1574 727124.6394 860379.0262 962608.6731 0.723505063 0.7507899 0.911502492 0.971133768 0.887285826 0.747609437 0.816567708 0.755368884 0.893799371 1 19.8765899 TPS(ph)VTEASPWR ddPTM_HeLa_A486_30min_R1 4 TPSVTEASPWR 11 0 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 T(0.001)PS(0.993)VT(0.006)EASPWR;T(0.019)PS(0.977)VT(0.004)EASPWR;T(0.134)PS(0.865)VT(0.001)EASPWR;T(0.001)PS(0.999)VTEASPWR ;;; 162.1 6.97E-08 953050000 631110 843020 601690 376574 961050 879330 1094090 1117840 697540 885120 TRUE FALSE FALSE 586872.4481 776216.025 834680.4818 876683.303 840506.1476 770847.205 820337.1099 863332.2343 758003.3288 663480.1908 0.884536503 1.169915901 1.258033764 1.321340584 1.266814231 1.161823994 1.236415376 1.3012178 1.142465652 1 19.33969387 -13.99920164 0.001225521 0.820089605 1.557623267 0 0.132610882 54402850.24 5036.471413 1543802.429 1487690.468 1.00E-14 13.99920164 0.737533662 TPSKPPAQLS(ph)PSVPK ddPTM_HeLa_A486_30min_R1 1 TPSKPPAQLSPSVPK 15 1 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 TPS(0.001)KPPAQLS(0.994)PS(0.005)VPK 79.635 0.00074101 0 130530 128890 76805 58527 127000 147300 171140 168940 113850 199450 TRUE FALSE FALSE 121380.5211 118676.287 106545.9529 136253.8138 111070.4758 129127.6236 128318.9619 130476.0499 123718.6097 149506.4218 0.811874966 0.79378722 0.712651347 0.9113576 0.742914414 0.863692824 0.858283947 0.87271201 0.827513683 1 17.18984793 -14 0.123408897 1.606744522 0.73687318 0.542929845 0.052967265 110.154903 0.872032251 16.48671832 0.450905768 1.00E-14 14 -0.869871342 TPSNTPSAEADWS(ph)PGLELHPDYK ddPTM_HeLa_A485_30min_R1 4 TPSNTPSAEADWSPGLELHPDYK 23 0 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3;A0A2R8YCS7;A0A2R8Y7R5;A0A2R8Y755;A0A2R8Y586;A0A2R8YF51;A0A2R8Y5D2 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 0 TPSNTPSAEADWS(1)PGLELHPDYK;TPSNTPSAEADWS(1)PGLELHPDYK;TPSNTPSAEADWS(1)PGLELHPDYK;TPSNTPSAEADWS(1)PGLELHPDYK ;;; 237.02 9.20E-49 4110820000 1719670 1786810 1463170 2108280 2234750 2099020 2792940 2629360 1759970 3071320 TRUE FALSE FALSE 2102204.659 1995761.886 2004457.471 2223449.998 2012250.443 2208921.441 2196205.553 1984505.337 2113179.836 2305696.447 0.911743895 0.865578766 0.869350114 0.964329021 0.872729993 0.958027864 0.952512875 0.860696706 0.916503921 1 21.13677116 -5.236759665 24.67642433 0.925765362 0.880559704 0.222908455 0.041484008 1087.289828 1087142.289 0.01097403 0.018997615 5.80E-06 5.236759665 -0.045205658 TPSNTPSAEADWS(ph)PGLELHPDYK ddPTM_HeLa_A486_30min_R1 4 TPSNTPSAEADWSPGLELHPDYK 23 0 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3;A0A2R8YCS7;A0A2R8Y7R5;A0A2R8Y755;A0A2R8Y586;A0A2R8YF51;A0A2R8Y5D2 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 0 TPSNTPSAEADWS(1)PGLELHPDYK;TPSNTPSAEADWS(1)PGLELHPDYK;TPSNTPSAEADWS(1)PGLELHPDYK;TPSNTPSAEADWS(1)PGLELHPDYK ;;; 217.74 4.64E-38 4545210000 2594190 2599430 1559330 1052022 2606180 2844930 3351100 3106600 2017910 3420420 TRUE FALSE FALSE 2412350.677 2393441.7 2163144.336 2449160.382 2279288.603 2493951.462 2512619.336 2399294.997 2192824.064 2563924.569 0.940882078 0.933507065 0.843684858 0.95523886 0.888984267 0.972708594 0.97998957 0.93579001 0.855260755 1 21.28992239 -6.258592947 24.98638322 0.946689147 0.912184566 0.132214321 0.046333845 603.8690794 5300850.412 0.015788937 0.015075604 5.51E-07 6.258592947 -0.034504582 TPSPKEEDEEPES(ph)PPEK ddPTM_HeLa_A485_30min_R1 1 TPSPKEEDEEPESPPEK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TPSPKEEDEEPES(1)PPEK 134.9 3.74E-06 710160000 784240 421490 481690 2283400 1503500 869120 1974200 1748800 988510 3342900 TRUE FALSE FALSE 958691.4824 470779.589 659887.1758 2408136.36 1353806.261 914625.7793 1552396.042 1319904.058 1186894.89 2509576.552 0.382013245 0.187593237 0.262947618 0.959578762 0.539456053 0.364454226 0.618588838 0.52594692 0.472946278 1 21.25901252 -14 0.103613925 2.526119689 0.172592107 0.403462791 0.197592935 203.6553096 1.421668076 67.9359868 3.232580003 1.00E-14 14 -2.353527582 TPSPKEEDEEPES(ph)PPEK ddPTM_HeLa_A486_30min_R1 3 TPSPKEEDEEPESPPEK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TPSPKEEDEEPES(1)PPEK;TPSPKEEDEEPES(1)PPEK;TPSPKEEDEEPES(1)PPEK ;; 207.67 1.25E-25 2900750000 1638190 2103870 995510 2226500 2647180 3527670 5000600 4790900 1891450 4164510 TRUE FALSE FALSE 1523361.341 1937151.679 1380998.133 5183404.521 2315146 3092461.942 3749396.989 3700116.655 2055402.409 3121689.59 0.487992575 0.620545901 0.442388038 1.660448412 0.741632355 0.990637235 1.201079378 1.185292947 0.658426262 1 21.57389566 -5.189479538 24.99999989 1.059641137 0.52733122 0.477062906 0.261655806 129.4501191 44972.36595 0.068179937 0.118091106 6.46E-06 5.189479538 -0.532309916 TPSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_A485_30min_R1 8 TPSPKEEDEEPESPPEKK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK ;;;;;;; 176.1 5.46E-13 38475060000 3738127 1759397 1496706 13945110 6024100 4324667 11421390 9428510 3582563 20711320 TRUE FALSE FALSE 4569660.455 1965143.174 2050399.833 14706896.05 5424319.452 4551099.877 8981116.722 7116153.139 4301550.533 15548369.09 0.293899664 0.126389023 0.131872341 0.945880302 0.348867423 0.292705933 0.577624359 0.457678429 0.27665606 1 23.89025992 -14 0.191091687 3.555371208 0.283464391 0.397033947 0.227693755 151.274388 1.48149671 147.9530365 0.641338726 1.00E-14 14 -3.271906817 TPSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_A486_30min_R1 8 TPSPKEEDEEPESPPEKK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK;TPSPKEEDEEPES(1)PPEKK ;;;;;;; 198.56 2.81E-25 64499300000 5094970 5432450 1953460 8471650 5983560 10602510 16728000 15082640 4613320 14504450 TRUE FALSE FALSE 4737838.913 5001962.877 2709892.027 19722429.33 5233046.11 9294480.115 12542477.47 11648652.12 5013206.292 10872441.31 0.435765876 0.460058853 0.249244116 1.813983517 0.481312886 0.854865972 1.153602683 1.071392504 0.461092973 1 23.37417259 TPSRAS(ph)PTR ddPTM_HeLa_A485_30min_R1 1 TPSRASPTR 9 1 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 TPS(0.001)RAS(0.976)PT(0.023)R 68.463 0.0077497 115270000 33520 53274 50115 26666 50932 38063 51830 68341 40667 39227 TRUE FALSE FALSE 40976.40836 59503.93088 68654.62396 28122.69606 45861.03125 40055.91982 40756.09709 51580.2626 48828.49388 29448.43082 1.39146322 2.020614655 2.331350841 0.954981141 1.557333616 1.360205577 1.383981963 1.751545368 1.658101723 1 14.84590314 -5.257471369 24.99995359 1.418813116 1.92509005 0.36070483 0.322688849 399.9483489 2519814.54 0.088748114 0.146722609 5.53E-06 5.257471369 0.506276934 TPSRAS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 TPSRASPTR 9 1 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 T(0.005)PS(0.005)RAS(0.984)PT(0.007)R 54.471 0.020865 27531000 18411 13942 14497 5074.2 15577 11460 14937 12496 13312 15418 TRUE FALSE FALSE 17120.48397 12837.18514 20110.62664 11812.99404 13623.18741 10046.18172 11199.60461 9650.933586 14465.89488 11557.23245 1.481365375 1.110749066 1.740090176 1.022130003 1.178758624 0.869254968 0.969055928 0.835055765 1.25167465 1 13.49650834 -5.373978394 10.04580485 1.008530665 1.410445053 0.524008676 0.18514313 0.3188915 26.41028235 0.050056213 0.0742677 4.23E-06 5.373978394 0.401914388 TPSRHS(ph)CS(ph)GSSPPR ddPTM_HeLa_A486_30min_R1 1 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 T(0.005)PS(0.034)RHS(0.957)CS(0.537)GS(0.254)S(0.213)PPR 62.813 0.0029944 0 68509 80270 81691 4713.3 98041 54377 60222 63728 71803 33571 TRUE FALSE FALSE 63706.87288 73909.11286 113323.943 10972.8006 85743.78358 47668.5186 45153.81864 49218.52557 78026.94185 25164.60309 2.531606505 2.937026767 4.503307386 0.436041076 3.407317146 1.894268645 1.794338598 1.955863377 3.100662529 1 14.61910822 -5.25054438 24.99959237 2.03405254 3.285284698 0.307360003 0.943526876 964.170226 2212374.499 0.24605719 0.42093648 5.62E-06 5.25054438 1.251232158 TPSRHS(ph)CSGS(ph)SPPR ddPTM_HeLa_A485_30min_R1 2 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 T(0.025)PS(0.125)RHS(0.849)CS(0.037)GS(0.62)S(0.344)PPR;T(0.001)PS(0.005)RHS(0.992)CS(0.09)GS(0.566)S(0.345)PPR ; 80.238 0.0053151 1084100000 333380 706360 746350 210695 858650 505330 666330 704270 645790 437000 TRUE FALSE FALSE 407539.2309 788962.6575 1022455.923 222204.7343 773159.7911 531788.2974 523963.1521 531546.6782 775394.1295 328063.9424 1.242255482 2.404905128 3.116636092 0.677321417 2.356735048 1.620989779 1.597137278 1.620253279 2.363545728 1 18.32361751 -5.253381772 24.99896676 1.662627617 2.269629393 0.170889248 0.646684698 1152.539812 3575781.398 0.171324396 0.290207367 5.58E-06 5.253381772 0.607001776 TPSRHS(ph)CSGS(ph)SPPR ddPTM_HeLa_A486_30min_R1 1 TPSRHSCSGSSPPR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 T(0.01)PS(0.05)RHS(0.939)CS(0.246)GS(0.413)S(0.341)PPR 66.448 0.015656 554340000 548790 604040 664260 49130 859990 465430 555410 518180 626080 270810 TRUE FALSE FALSE 510322.655 556173.6705 921479.2615 114377.1229 752122.0351 408009.9787 416440.5435 400201.7258 680349.1185 202997.4133 2.513936737 2.739806687 4.539364549 0.563441282 3.705081867 2.009926984 2.051457389 1.971462194 3.351516196 1 17.63110182 -10.16685747 0.204761055 2.17E-17 2.984190207 0.165131487 1.045163349 38.82665314 1.653123138 27.85139136 2.844286269 6.81E-11 10.16685747 2.984190207 TPSS(ph)PCPASK ddPTM_HeLa_A485_30min_R1 5 TPSSPCPASK 10 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 TPS(0.062)S(0.937)PCPASK;TPS(0.053)S(0.947)PCPASK;T(0.005)PS(0.011)S(0.984)PCPASK;T(0.004)PS(0.077)S(0.92)PCPASK;T(0.004)PS(0.032)S(0.964)PCPASK ;;;; 119.74 0.00028212 3812083000 8540440 7977390 6627800 10510270 10682640 8812860 11828770 11312840 8293710 14135930 TRUE FALSE FALSE 10440231.41 8910276.366 9079699.026 11084419.44 9619038.853 9274287.722 9301456.657 8538348.252 9958181.523 10612102.8 0.98380421 0.839633438 0.85559848 1.044507356 0.906421567 0.873934968 0.876495152 0.804585897 0.93837967 1 23.33920722 -6.000987707 24.99998151 0.885645806 0.926049441 0.026017386 0.072421187 118.8364329 3008018.112 0.022708501 0.025435119 9.98E-07 6.000987707 0.040403635 TPSS(ph)PCPASK ddPTM_HeLa_A486_30min_R1 5 TPSSPCPASK 10 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 T(0.001)PS(0.046)S(0.953)PCPASK;TPS(0.048)S(0.952)PCPASK;TPS(0.001)S(0.999)PCPASK;T(0.047)PS(0.254)S(0.699)PCPASK;TPS(0.002)S(0.998)PCPASK ;;;; 147.58 4.63E-06 4727460000 6801230 7426540 4735170 2794880 7552600 7369340 8624600 8048400 6673620 8288660 TRUE FALSE FALSE 6324498.899 6838033.923 6568754.636 6506621.885 6605282.483 6460185.757 6466633.858 6215955.015 7252094.755 6213125.586 1.017925489 1.100578739 1.057238349 1.047238108 1.063117491 1.039764233 1.040802052 1.000455396 1.167221659 1 22.56688779 -4.998348372 24.99952172 1.050938938 1.064166213 0.002981601 0.04745393 372.6682782 5640614.891 0.011720818 0.02418727 1.00E-05 4.998348372 0.013227274 TPSS(ph)PLQSCTPSLS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 2 0 T(0.005)PS(0.115)S(0.879)PLQSCT(0.004)PS(0.028)LS(0.968)PR 111.63 0.00037008 115410000 136110 174190 175920 83882 242540 159400 185660 185780 154820 138190 TRUE FALSE FALSE 166387.1999 194560.0052 241000.1286 88464.26126 218391.866 167745.9375 145992.2243 140217.1637 185890.9539 103741.7762 1.603859178 1.875425816 2.323076946 0.852735171 2.105148707 1.616956482 1.407265517 1.35159787 1.791862071 1 16.66263745 -11.13523147 0.128984712 8.81E-11 2.030663489 0.228013089 0.383762663 84.6367166 1.495195931 29.36360166 3.63759837 7.32E-12 11.13523147 2.030663489 TPSS(ph)PLQSCTPSLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 2 0 T(0.024)PS(0.163)S(0.814)PLQS(0.026)CT(0.006)PS(0.032)LS(0.936)PR;T(0.001)PS(0.122)S(0.877)PLQSCT(0.001)PS(0.017)LS(0.982)PR ; 136.66 1.42E-05 348580000 309570 409280 336590 108520 457390 361500 384850 376520 317940 336120 TRUE FALSE FALSE 287870.7416 376847.1622 466926.6622 252640.0443 400019.8812 316901.8055 288556.4595 290794.6154 345499.2952 251953.3642 1.142555657 1.495702045 1.853226543 1.002725425 1.5876743 1.257779615 1.145277263 1.154160478 1.371282722 1 17.94279719 -6.483522851 8.640456781 1.18333477 1.42240896 0.202766781 0.233234259 0.612404431 127.8227653 0.081779625 0.071198614 3.28E-07 6.483522851 0.239074191 TPSS(ph)PLQSCTPSLSPR ddPTM_HeLa_A485_30min_R1 2 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 TPS(0.034)S(0.965)PLQSCTPSLSPR;T(0.007)PS(0.062)S(0.931)PLQSCTPSLSPR ; 136.24 7.43E-06 380560000 180245 231140 199338 204177 267060 206444 294290 292900 185871 254300 TRUE FALSE FALSE 220339.8784 258169.8123 273081.4213 215330.6725 240470.5687 217253.0886 231412.5374 221065.8158 223173.6048 190907.69 1.154169737 1.352327988 1.430436989 1.127930847 1.259616984 1.138000719 1.212169805 1.157972294 1.169013175 1 17.54251569 -8.025091569 0.218254513 0.930397626 1.341937738 0.450457129 0.085771974 3.225464621 0.555071583 0.483802414 0.300343189 9.44E-09 8.025091569 0.411540112 TPSS(ph)PLQSCTPSLSPR ddPTM_HeLa_A486_30min_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 TPS(0.034)S(0.966)PLQSCTPSLSPR 126.16 2.17E-05 129690000 131820 146720 125590 60023 175530 158630 158780 149950 126030 171430 TRUE FALSE FALSE 122580.0987 135093.3729 174221.8114 139736.5774 153513.3906 139059.8434 119051.5646 115809.6584 136954.3819 128502.8122 0.953909853 1.051287288 1.355782091 1.087420384 1.194630592 1.082154087 0.926451045 0.901222755 1.065769531 1 16.97144041 -6.608806784 4.793619861 0.9662401 1.135081306 0.323743528 0.10557819 0.246198787 9.991064021 0.042707784 0.032730572 2.46E-07 6.608806784 0.168841206 TPSS(ph)SQPER ddPTM_HeLa_A485_30min_R1 2 TPSSSQPER 9 0 O43395;O43395-3 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 T(0.002)PS(0.002)S(0.498)S(0.498)QPER;T(0.004)PS(0.004)S(0.496)S(0.496)QPER ; 71.03 0.014247 2237600000 2541400 2642900 2418600 3421200 3530500 2835300 3939700 3592400 2687800 4334700 TRUE FALSE FALSE 3106725.662 2951964.165 3313340.786 3608091.493 3178991.024 2983751.924 3097950.911 2711358.267 3227216.806 3254139.064 0.954699723 0.907141369 1.018192745 1.108769915 0.976906936 0.916909777 0.952003233 0.83320295 0.991726765 1 21.63384447 -6.12938907 5.265745293 0.929596945 0.997783208 0.147125798 0.064564637 0.407478431 15.77456774 0.022573095 0.022662965 7.42E-07 6.12938907 0.068186263 TPSSEEIS(ph)PTKFPGLYR ddPTM_HeLa_A485_30min_R1 2 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 T(0.001)PS(0.031)S(0.031)EEIS(0.924)PT(0.014)KFPGLYR;TPSSEEIS(0.974)PT(0.026)KFPGLYR ; 138.28 1.83E-06 525350000 294480 314710 250750 402720 429840 347620 482490 489590 261720 509930 TRUE FALSE FALSE 359986.0601 351512.5969 343512.8596 424719.5739 387043.6203 365820.8457 379402.0699 369517.2849 314244.8034 382813.8356 0.940368468 0.918233784 0.897336584 1.109467669 1.011049195 0.955610304 0.991087664 0.965266274 0.82088152 1 18.54628345 -9.945720801 12.68432523 1.00000001 0.961057525 0.028631054 0.071725528 0 0 0.071956232 0.01745195 1.13E-10 9.945720801 -0.038942484 TPSSEEIS(ph)PTKFPGLYR ddPTM_HeLa_A486_30min_R1 1 TPSSEEISPTKFPGLYR 17 1 Q15311;J3QLT3;E7ENF8;A0A1W2PRI7 Q15311 RALBP1 RalA-binding protein 1 1 0 TPSSEEIS(0.991)PT(0.009)KFPGLYR 162.09 3.84E-12 227440000 189220 209030 142250 114070 213190 206400 252610 241610 174710 274530 TRUE FALSE FALSE 175956.6551 192465.7015 197333.0096 265560.7248 186449.7223 180936.4665 189404.3062 186600.6773 189854.0035 205785.9011 0.855047183 0.935271564 0.958923855 1.290470938 0.906037397 0.879246175 0.92039496 0.906770951 0.922580228 1 17.65078462 TPSSPLQSCTPSLS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 TPSSPLQSCTPS(0.003)LS(0.997)PR;TPSSPLQSCTPS(0.004)LS(0.996)PR ; 128.94 1.77E-05 309240000 83513 114952 98990 91260 127607 101129 134553 136254 103626 118347 TRUE FALSE FALSE 102090.1787 128394.6365 135610.5203 96245.30272 114901.999 106423.9581 105804.6524 102837.4929 124422.7877 88845.27092 1.149078366 1.445148798 1.526367345 1.083291229 1.293282105 1.197857319 1.19088671 1.157489777 1.400443562 1 16.43900737 -5.266996159 24.9858873 1.200386171 1.380693232 0.277373081 0.135453363 581.3868835 2614188.161 0.036671946 0.056192338 5.41E-06 5.266996159 0.180307061 TPSSPLQSCTPSLS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 TPSSPLQSCTPS(0.005)LS(0.995)PR;TPSSPLQSCTPS(0.001)LS(0.999)PR ; 115.63 9.98E-06 131010000 134978 131185 117958 43295 150305 127372 141489 123693 125465 132072 TRUE FALSE FALSE 125516.7392 120789.4228 163634.4966 100792.948 131452.3454 111658.1377 106086.9557 95530.8041 136340.4072 99000.31156 1.267841861 1.22009134 1.652868502 1.018107382 1.32779729 1.127856427 1.071582039 0.96495458 1.377171497 1 16.59514544 -5.841745393 1.256971634 1.105275906 1.34031452 0.22149496 0.17817049 0.675912563 2.248553501 0.072167579 0.095693563 1.44E-06 5.841745393 0.235038615 TPSSS(ph)PPIT(ph)PPASETK ddPTM_HeLa_A485_30min_R1 1 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 0 TPSS(0.003)S(0.997)PPIT(0.995)PPAS(0.005)ETK 129.88 4.26E-05 182970000 166940 172380 144400 196040 216760 200560 275810 280490 184990 278950 TRUE FALSE FALSE 204075.2271 192538.3415 197819.569 206749.1688 195178.6133 211061.0115 216880.9403 211699.3877 222115.7962 209412.8987 0.974511257 0.919419686 0.944638894 0.98728001 0.932027657 1.007870159 1.035661804 1.010918568 1.060659575 1 17.67599078 -6.406922777 4.310203152 1.027158884 0.951580801 0.701878901 0.023490286 0.126991153 3.896028016 0.008350798 0.007238904 3.92E-07 6.406922777 -0.075578084 TPSSS(ph)PPITPPASETK ddPTM_HeLa_A485_30min_R1 2 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 TPSS(0.001)S(0.998)PPITPPASETK;T(0.001)PS(0.006)S(0.073)S(0.92)PPIT(0.001)PPASETK ; 177.66 3.48E-13 335370000 395030 434590 337130 416240 477720 452490 580260 581910 367100 559720 TRUE FALSE FALSE 482903.0607 485411.5201 461848.4161 438978.1372 430156.5194 476181.6767 456282.7107 439195.6601 440773.6028 420192.1049 1.149243537 1.155213328 1.099136349 1.044708199 1.02371395 1.133247558 1.085890728 1.045225874 1.048981163 1 18.68068953 -1 0.273894503 1.036622106 1.955979861 0.535700496 0.035177107 46.00852604 0.645109795 0.043852181 20.09528519 0.1 1 0.919357755 TPSSS(ph)PPITPPASETK ddPTM_HeLa_A486_30min_R1 2 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 TPS(0.001)S(0.02)S(0.979)PPIT(0.001)PPASETK;TPS(0.002)S(0.017)S(0.98)PPITPPASETK ; 144.29 8.28E-08 211911000 791940 726780 426110 255976 714650 762850 824950 826920 563110 903740 TRUE FALSE FALSE 736429.0956 669187.3059 591111.2036 595925.0643 625011.9332 668737.3231 618538.7846 638648.3675 611920.8282 677437.6216 1.087080304 0.987821291 0.8725692 0.879675184 0.922611785 0.987157048 0.913056442 0.942741217 0.903287341 1 19.36972858 -4.41284165 3.331725393 0.925335353 1.087687536 0.603235284 0.039533637 0.176003267 3.250426522 0.010237418 0.057261397 3.87E-05 4.41284165 0.162352183 TPT(ph)PDRPPR ddPTM_HeLa_A486_30min_R1 1 TPTPDRPPR 9 1 Q9NX09 Q9NX09 DDIT4 DNA damage-inducible transcript 4 protein 1 0 T(0.108)PT(0.892)PDRPPR 58.676 0.013624 0 150540 164630 123870 69510 155940 175670 183620 181520 150660 219480 TRUE FALSE FALSE 139987.9234 151584.1192 171835.7814 161822.7928 136380.5511 153997.6215 137676.3339 140191.8586 163719.3301 164520.7794 0.850882933 0.921367622 1.04446248 0.983600937 0.828956388 0.936037515 0.836832492 0.852122504 0.995128583 1 17.32791029 -4.270565389 6.206532639 0.927566694 0.849340989 0.103801862 0.07096022 0.311973613 62.78299832 0.01860076 0.101363853 5.36E-05 4.270565389 -0.078225705 TPT(ph)SPLK ddPTM_HeLa_A485_30min_R1 1 TPTSPLK 7 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 T(0.005)PT(0.497)S(0.497)PLK 90.135 0.032863 9645400000 5218200 4639000 3193200 6967000 6048800 5889300 9266900 9039700 4396300 9269900 TRUE FALSE FALSE 6378970.587 5181490.696 4374497.56 7347589.569 5446560.233 6197654.641 7286951.111 6822699.401 5278597.085 6959084.53 0.916639331 0.744564989 0.628602446 1.055827033 0.782654703 0.890584762 1.047113464 0.980401858 0.758518892 1 22.7304661 -5.26225565 24.99991392 0.926919036 0.761398534 0.308460485 0.114792899 92.09814302 2820721.129 0.031960294 0.050706627 5.47E-06 5.26225565 -0.165520502 TPTCQSSTDCS(ph)PYAR ddPTM_HeLa_A486_30min_R1 1 TPTCQSSTDCSPYAR 15 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 TPTCQS(0.001)S(0.001)T(0.001)DCS(0.994)PY(0.004)AR 66.246 0.014064 165180000 41165 56435 50398 14502 63791 49179 60277 60201 44625 57430 TRUE FALSE FALSE 38279.54608 51962.88507 69913.45531 33761.38889 55789.73795 43111.795 45195.05705 46494.54648 48493.13093 43049.15419 0.889205532 1.207059373 1.624037838 0.784252084 1.295954334 1.001455099 1.049847736 1.080033914 1.126459552 1 15.39369727 -5.287227044 24.99991274 1.060054182 1.236797044 0.155134529 0.203796179 1477.308723 1432176.932 0.05664368 0.084048554 5.16E-06 5.287227044 0.176742862 TPTGEGLLDS(ph)PSK ddPTM_HeLa_A485_30min_R1 2 TPTGEGLLDSPSK 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 TPTGEGLLDS(0.995)PS(0.005)K;TPTGEGLLDS(1)PSK ; 227.47 1.15E-27 1666380000 1080700 917070 764430 1662090 1240360 964520 1564070 1132300 873830 2261900 TRUE FALSE FALSE 1321097.987 1024313.359 1047224.468 1752885.768 1116865.403 1015020.776 1229893.667 854601.6496 1049199.666 1698049.957 0.778008904 0.603229225 0.616721824 1.032293403 0.657734125 0.597756722 0.724297693 0.503284162 0.61788504 1 20.69544747 -10.05863646 4.759444957 1.000008587 0.680263248 0.327310659 0.137083097 34877162.1 73709582.91 2353.129937 0.034251184 8.74E-11 10.05863646 -0.319745338 TPTGEGLLDS(ph)PSK ddPTM_HeLa_A486_30min_R1 4 TPTGEGLLDSPSK 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 TPTGEGLLDS(1)PSK;TPTGEGLLDS(0.996)PS(0.004)K;TPTGEGLLDS(0.998)PS(0.002)K;TPTGEGLLDS(0.999)PS(0.001)K ;;; 198.87 2.11E-21 1441490000 2492550 2281950 1103070 1283360 1925350 2585610 3243200 2797230 1724880 3953350 TRUE FALSE FALSE 2317835.117 2101119.971 1530208.245 2987726.937 1683854.65 2266623.727 2431717.057 2160361.792 1874393.987 2963405.428 0.782152551 0.709022111 0.516368173 1.008207284 0.568216091 0.764871288 0.820581968 0.72901324 0.632513516 1 21.49882459 -10.99444931 2.898390485 1.263277236 0.726738789 0.283531269 0.130819925 55216387.97 22694039.1 96971257.76 0.03101026 1.01E-11 10.99444931 -0.536538447 TPTHQPPKPGS(ph)PGRPACPLSNLLLQSYEER ddPTM_HeLa_A485_30min_R1 3 TPTHQPPKPGSPGRPACPLSNLLLQSYEER 30 2 Q96F63 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 0 T(0.063)PT(0.063)HQPPKPGS(0.874)PGRPACPLSNLLLQSYEER;T(0.001)PT(0.001)HQPPKPGS(0.992)PGRPACPLS(0.005)NLLLQSYEER;TPTHQPPKPGS(1)PGRPACPLSNLLLQSYEER ;; 108.15 6.79E-05 6433000000 1141030 1257910 958860 1233710 1479710 1377580 1864700 1870210 1096930 1685720 TRUE FALSE FALSE 1394848.187 1405011.632 1313582.215 1301104.453 1332384.877 1449707.959 1466291.612 1411538.065 1317073.789 1265501.027 1.102210237 1.1102414 1.037993796 1.028133858 1.052851675 1.145560475 1.158664892 1.115398593 1.040752841 1 20.27127725 TPTHQPPKPGS(ph)PGRPACPLSNLLLQSYEER ddPTM_HeLa_A486_30min_R1 1 TPTHQPPKPGSPGRPACPLSNLLLQSYEER 30 2 Q96F63 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 0 TPTHQPPKPGS(1)PGRPACPLSNLLLQSYEER 145.47 9.86E-10 2846200000 786090 687210 372490 230690 704120 675410 828290 789060 566710 821630 TRUE FALSE FALSE 730989.1504 632752.9768 516728.1036 537057.9784 615802.7039 592084.7813 621043.0812 609408.2631 615832.8791 615888.5001 1.186885532 1.027382354 0.838996188 0.872005206 0.999860695 0.961350604 1.008369341 0.98947823 0.99990969 1 19.23230966 -9.404489738 15.04250298 1.00000127 0.980886945 0 0.088610434 0 0 0.090635006 0.021982218 3.94E-10 9.404489738 -0.019114325 TPTLYLDFK ddPTM_HeLa_A485_30min_R1 2 TPTLYLDFK 9 0 O00625 O00625 PIR Pirin 0 0 ; ; 113.18 0.0077982 47804000 66549 48613 65701 97863 112218 63128 85223 70513 67578 135383 FALSE FALSE TRUE 81352.59546 54297.86747 90006.53395 103209.0079 101045.1819 66433.28447 67014.40984 53219.57619 81140.28474 101634.5096 0.800442642 0.534246366 0.885590281 1.015491768 0.9942015 0.653648891 0.659366686 0.523636867 0.79835368 1 16.63303082 -6.297607807 24.96763674 0.693001351 0.840291527 0.092671045 0.169822997 1223.026673 844270.8348 0.062856102 0.055435427 5.04E-07 6.297607807 0.147290176 TPTLYLDFK ddPTM_HeLa_A486_30min_R1 1 TPTLYLDFK 9 0 O00625 O00625 PIR Pirin 0 0 101.9 0.014138 40031000 30902 59096 51262 22396 82180 65146 70191 73510 52617 51422 FALSE FALSE TRUE 28735.92938 54413.01774 71112.01924 52139.01983 71872.2181 57108.94888 52628.4694 56773.37771 57177.88393 38545.5965 0.745504856 1.41165328 1.844880497 1.352658269 1.864602565 1.481594632 1.365356206 1.472888809 1.483383035 1 15.23427843 -10.15513919 4.596792293 0.999946438 1.466505903 0.172110574 0.291246528 0.000181731 3.34E-05 0.281551059 0.068277267 7.00E-11 10.15513919 0.466559466 TPTS(ph)PLEELTSLFSSGR ddPTM_HeLa_A485_30min_R1 1 TPTSPLEELTSLFSSGR 17 0 Q9P242;Q9P242-3 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 TPT(0.002)S(0.997)PLEELTSLFSSGR 221.78 3.59E-34 277730000 155680 181620 158420 182350 228890 146740 201780 202290 175540 214400 TRUE FALSE FALSE 190310.4789 202858.8791 217026.1504 192311.3188 206100.9079 154423.0795 158668.0546 152678.0603 210769.2679 160954.0257 1.182390301 1.260352937 1.348373546 1.194821427 1.280495514 0.95942353 0.985797366 0.948581805 1.309499821 1 17.29628914 -6.253474764 24.92900787 1.03401792 1.255713847 0.504998787 0.105138996 477.2118837 1493659.26 0.034650722 0.034063395 5.58E-07 6.253474764 0.221695928 TPTS(ph)PLK ddPTM_HeLa_A485_30min_R1 7 TPTSPLK 7 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 TPT(0.259)S(0.741)PLK;T(0.005)PT(0.049)S(0.946)PLK;T(0.108)PT(0.133)S(0.758)PLK;T(0.001)PT(0.007)S(0.992)PLK;T(0.009)PT(0.019)S(0.972)PLK;TPT(0.031)S(0.969)PLK;T(0.003)PT(0.002)S(0.995)PLK ;;;;;; 136.39 0.0015814 26307980000 26813720 25191630 18325260 36631890 30515200 30800020 47129660 47948100 22314120 50540800 TRUE FALSE FALSE 32778339.51 28137571.99 25104536.25 38632997.39 27476999.54 32412661.42 37060023.13 36188753.3 26792359.21 37941908.69 0.863908555 0.741596113 0.661657178 1.018214389 0.724186012 0.854270714 0.976756953 0.953793695 0.706141576 1 25.17728892 -5.798326693 0.890604225 0.899496954 0.772385383 0.130571101 0.118531482 1.266697963 2.181063317 0.060713654 0.094550844 1.59E-06 5.798326693 -0.127111571 TPTS(ph)PLK ddPTM_HeLa_A486_30min_R1 8 TPTSPLK 7 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 T(0.002)PT(0.032)S(0.966)PLK;T(0.077)PT(0.048)S(0.874)PLK;T(0.006)PT(0.241)S(0.753)PLK;T(0.168)PT(0.23)S(0.602)PLK;T(0.006)PT(0.001)S(0.992)PLK;T(0.003)PT(0.019)S(0.978)PLK;TPT(0.034)S(0.965)PLK;T(0.212)PT(0.122)S(0.666)PLK ;;;;;;; 125.04 0.0017615 32799790000 59085300 60696200 33137740 28219960 56635800 66968000 87494400 78500400 53239500 96734600 TRUE FALSE FALSE 54943725.59 55886412.06 45969560.39 65697493.04 49532009.86 58706169.04 65602375.7 60627572.57 57854342.73 72511626.52 0.757722978 0.770723465 0.633961236 0.906027022 0.683090592 0.809610429 0.904715269 0.836108297 0.797862984 1 26.111709 -14 0.091513685 1.713061531 0.614384908 0.474564212 0.074803037 179.1762154 1.133760735 24.57524782 1.647209046 1.00E-14 14 -1.098676623 TPTSS(ph)PASSPLVAK ddPTM_HeLa_A485_30min_R1 4 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 TPTSS(0.996)PAS(0.002)S(0.002)PLVAK;TPTS(0.029)S(0.97)PASSPLVAK;TPTSS(0.998)PAS(0.002)SPLVAK;TPTS(0.001)S(0.998)PASSPLVAK ;;; 284.91 2.17E-49 3000470000 2065280 2280520 1729900 2167780 2705880 2409720 3265880 3532460 1917120 2983320 TRUE FALSE FALSE 2524694.411 2547206.976 2369861.997 2286200.332 2436473.086 2535889.213 2568098.058 2666118.646 2301868.399 2239633.228 1.127280297 1.137332195 1.058147364 1.02079229 1.087889328 1.132278795 1.146660099 1.190426456 1.027788109 1 21.09483106 -6.132823122 7.451756625 1.114177301 1.083581893 0 0.060899923 0.946976561 53.07936885 0.020350697 0.020377821 7.37E-07 6.132823122 -0.030595408 TPTSS(ph)PASSPLVAK ddPTM_HeLa_A486_30min_R1 4 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 TPTSS(0.991)PAS(0.004)S(0.004)PLVAK;TPTS(0.003)S(0.796)PAS(0.152)S(0.049)PLVAK;TPTS(0.001)S(0.998)PASSPLVAK;TPTSS(0.998)PAS(0.002)SPLVAK ;;; 287.96 7.16E-50 3274570000 3614990 3329520 2214920 1183600 3468530 3301030 3979950 3753920 2734670 3869470 TRUE FALSE FALSE 3361597.869 3065676.709 3072596.342 2755480.616 3033474.625 2893782.481 2984124.414 2899234.363 2971713.397 2900529.526 1.158960058 1.056936908 1.059322553 0.949992266 1.045834768 0.997673858 1.028820561 0.999553474 1.024541681 1 21.46788487 -4.121890185 1.259247381 1.009694643 1.260547166 0.733254449 0.027194424 0.927134238 1.020643847 0.007602515 0.326471324 7.55E-05 4.121890185 0.250852522 TPTSSPAS(ph)SPLVAK ddPTM_HeLa_A485_30min_R1 2 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 TPTSS(0.007)PAS(0.496)S(0.496)PLVAK;T(0.001)PT(0.001)S(0.001)S(0.007)PAS(0.594)S(0.396)PLVAK ; 89.013 0.0009369 66593000 184091 208578 148670 188014 183387 181209 217797 236679 131665 236782 TRUE FALSE FALSE 225041.4078 232969.3827 203669.2197 198284.7287 165128.3464 190696.823 171262.8917 178633.1042 158088.9578 177756.605 1.266008696 1.310608867 1.145775819 1.11548445 0.928957584 1.072797396 0.963468512 1.004930895 0.889356307 1 17.43954364 -5.201712687 1.263291652 0.977558912 1.302876699 0.831117972 0.054695001 0.183271676 0.551072896 0.017873046 0.049565819 6.28E-06 5.201712687 0.325317787 TPTSSPASS(ph)PLVAK ddPTM_HeLa_A485_30min_R1 2 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 TPTSSPAS(0.058)S(0.942)PLVAK;TPTSSPAS(0.131)S(0.869)PLVAK ; 278.73 5.11E-49 636040000 773610 837800 584590 771310 825670 745480 909250 978140 541260 964170 TRUE FALSE FALSE 945696.8756 935773.4221 800854.1678 813444.7122 743463.3957 784512.1801 714981.3096 738249.6313 649885.9173 723820.1632 1.306535689 1.292825856 1.106426995 1.12382157 1.027138278 1.08384958 0.987788605 1.019935156 0.897855504 1 19.46527177 -4.022044389 0.419258012 0.965462997 1.68472302 0.862470644 0.045948728 2.125670459 0.252225981 0.033627352 0.798713462 9.51E-05 4.022044389 0.719260023 TPTSSPASS(ph)PLVAK ddPTM_HeLa_A486_30min_R1 2 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 TPTSSPAS(0.358)S(0.642)PLVAK;TPTSS(0.002)PAS(0.272)S(0.725)PLVAK ; 263.98 6.75E-42 306165000 785340 706710 400230 235090 612470 631720 749480 714160 494160 765820 TRUE FALSE FALSE 730291.7215 650707.7258 555209.7745 547301.4008 535648.3015 553784.8093 561952.1768 551561.358 536994.1867 574053.6873 1.272166241 1.133531132 0.967173954 0.953397588 0.93309792 0.964691668 0.978919201 0.960818422 0.935442448 1 19.13082614 -4.541936297 2.208079953 0.957667982 1.282035939 0.962765975 0.01987026 0.063364856 0.521857596 0.005499353 0.031973818 2.87E-05 4.541936297 0.324367957 TPTVPDS(ph)PGYMGPTR ddPTM_HeLa_A485_30min_R1 1 TPTVPDSPGYMGPTR 15 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 TPTVPDS(0.999)PGY(0.001)MGPTR 127.66 2.47E-05 0 52039 64628 61732 59712 77519 60326 80055 78266 49361 76135 TRUE FALSE FALSE 63614.89602 72185.68241 84569.23568 62973.91536 69800.93617 63484.57608 62950.59526 59071.14078 59267.29993 57155.94566 1.113005747 1.262960162 1.479622718 1.101791155 1.22123666 1.110725671 1.101383146 1.03350824 1.036940239 1 15.80261596 -6.408398788 0.90414168 1.020344237 1.267309311 0.488343646 0.096707776 0.507083338 0.872363646 0.065308875 0.052144483 3.90E-07 6.408398788 0.246965074 TPTVPDS(ph)PGYMGPTR ddPTM_HeLa_A486_30min_R1 2 TPTVPDSPGYMGPTR 15 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 TPTVPDS(1)PGYMGPTR;TPTVPDS(1)PGYMGPTR ; 217.48 1.62E-23 245690000 269010 270980 211870 137062 311190 266070 303610 301770 200314 332290 TRUE FALSE FALSE 250153.7882 249506.5579 293911.7381 319087.2627 272157.6485 233244.9886 227643.5667 233063.5586 217677.3788 249082.4212 1.004301255 1.001702797 1.179977843 1.281050912 1.092640931 0.9364169 0.913928673 0.935688506 0.873917066 1 17.92626368 -6.241499178 4.624848448 0.925615408 1.120814345 0.552518967 0.08100693 0.165459517 9.441895746 0.031030586 0.029698692 5.73E-07 6.241499178 0.195198937 TPVDES(ph)DDEIQHDEIPTGK ddPTM_HeLa_A485_30min_R1 5 TPVDESDDEIQHDEIPTGK 19 0 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 TPVDES(1)DDEIQHDEIPTGK;TPVDES(1)DDEIQHDEIPTGK;TPVDES(1)DDEIQHDEIPTGK;TPVDES(1)DDEIQHDEIPTGK;T(0.008)PVDES(0.992)DDEIQHDEIPTGK ;;;; 292.29 4.87E-79 8067050000 2191167 2132267 1770642 2417093 3034840 2372712 3295367 3565600 2256297 3174708 TRUE FALSE FALSE 2678584.54 2381617.077 2425676.158 2549132.67 2732680.674 2496943.531 2591284.92 2691131.009 2709115.112 2383311.722 1.123891816 0.999288954 1.017775449 1.069575854 1.146589701 1.047678115 1.087262273 1.129156117 1.136701963 1 21.18453623 -5.522738005 24.99999673 1.096473937 1.042459071 0.125203219 0.051064027 8.176655261 1452770.312 0.014597743 0.019050485 3.00E-06 5.522738005 -0.054014865 TPVDES(ph)DDEIQHDEIPTGK ddPTM_HeLa_A486_30min_R1 4 TPVDESDDEIQHDEIPTGK 19 0 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 TPVDES(1)DDEIQHDEIPTGK;TPVDES(1)DDEIQHDEIPTGK;TPVDES(1)DDEIQHDEIPTGK;TPVDES(1)DDEIQHDEIPTGK ;;; 275.15 1.48E-69 6841000000 4542940 4963010 3441210 2006900 5448700 5235900 6434500 6589700 3879210 5434400 TRUE FALSE FALSE 4224503.366 4569723.013 4773738.671 4672164.623 4765273.239 4589947.893 4824520.043 5089369.162 4215463.046 4073590.868 1.037046552 1.121792335 1.171874846 1.146940077 1.169796721 1.126757213 1.184340843 1.249356974 1.034827302 1 21.95786966 -4.304636042 3.189710529 1.147489959 1.026058325 0.134176015 0.069114906 0.48152243 7.936996564 0.016444863 0.136858207 4.96E-05 4.304636042 -0.121431634 EEKREEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_A485_30min_R1 2 EEKREEDEENDNDNESDHDEADS 23 2 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 EEKREEDEENDNDNES(1)DHDEADS;EEKREEDEENDNDNES(1)DHDEADS ; 244.14 3.03E-49 1248430000 277070 207240 325830 673600 951740 475640 1077170 1127440 493690 1165260 TRUE FALSE FALSE 338703.2656 231474.9153 446368.0759 710397.0624 856981.4238 500543.7749 847023.8298 850933.5722 592769.0546 874782.127 0.387185855 0.264608647 0.510261998 0.812084564 0.979651272 0.572192503 0.968268331 0.972737721 0.677619074 1 19.73856422 -5.137496722 2.723730376 0.855218861 0.329165597 0.722139795 0.135961825 0.140104476 2.00755608 0.0381332 0.076466752 7.29E-06 5.137496722 -0.526053264 down TPVQYSQQQNS(ph)PQK ddPTM_HeLa_A486_30min_R1 3 TPVQYSQQQNSPQK 14 0 P46013 P46013 MKI67 Antigen KI-67 1 0 TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK ;; 339.52 1.25E-81 936780000 407235 381726 217203 159680 375029 501340 523960 466220 333571 697230 TRUE FALSE FALSE 378689.9295 351476.6415 301309.8185 371743.1098 327989.3658 439489.7681 392859.6661 360071.8835 362485.2029 522639.0698 0.724572561 0.672503572 0.576516062 0.71128075 0.62756381 0.840904926 0.751684458 0.688949419 0.693566983 1 18.99545545 -6.250245757 24.81942909 0.772871954 0.660978368 0.327908302 0.092170829 932.0560937 2066633.384 0.029734031 0.02946838 5.62E-07 6.250245757 -0.111893586 TPVS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 TPVSPVK 7 0 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 T(0.004)PVS(0.996)PVK;T(0.006)PVS(0.994)PVK ; 71.451 0.019923 751680000 1324700 1186580 1076060 2000490 1577580 1363590 1827570 1537550 1252010 2557200 TRUE FALSE FALSE 1619374.945 1325340.209 1474139.373 2109771.703 1420510.596 1434985.464 1437094.74 1160463.452 1503276.923 1919737.102 0.843539953 0.690375889 0.767886067 1.098989909 0.739950587 0.747490613 0.748589345 0.604490818 0.783063953 1 20.87247732 TPVS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 TPVSPVK 7 0 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 T(0.022)PVS(0.978)PVK 76.572 0.015611 564520000 1092700 1124100 590750 384270 929800 1148000 1336100 1232300 989610 1418100 TRUE FALSE FALSE 1016107.373 1035022.222 819504.2208 894599.9799 813175.814 1006371.432 1001793.648 951732.1909 1075390.192 1062998.53 0.955887844 0.973681706 0.770936363 0.841581578 0.764983009 0.946728903 0.942422421 0.895327853 1.011657271 1 20.01970817 -6.475177029 24.83160333 0.952335908 0.860956114 0.328143815 0.069676354 516.4391912 268837.6549 0.026144194 0.023056361 3.35E-07 6.475177029 -0.091379794 TPVS(ph)PVKFS(ph)PGDFWGR ddPTM_HeLa_A485_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 2 0 T(0.007)PVS(0.993)PVKFS(1)PGDFWGR;T(0.028)PVS(0.972)PVKFS(1)PGDFWGR ; 167.73 5.31E-12 374150000 692740 621800 455790 845430 785490 627920 968190 873920 484720 1019820 TRUE FALSE FALSE 846837.6231 694514.1011 624405.688 891613.7002 707283.8576 660796.9203 761328.2971 659589.7497 581998.8579 765597.6424 1.106113154 0.907152873 0.815579429 1.164598283 0.923832335 0.863112533 0.994423513 0.861535764 0.760188937 1 19.54622686 -5.987334616 24.99071519 0.893371433 0.986968368 0.158273537 0.110788271 482.6124584 952261.897 0.034679698 0.039299864 1.03E-06 5.987334616 0.093596935 TPVS(ph)PVKFS(ph)PGDFWGR ddPTM_HeLa_A486_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 2 0 T(0.01)PVS(0.99)PVKFS(1)PGDFWGR;T(0.01)PVS(0.99)PVKFS(1)PGDFWGR ; 137.09 6.86E-06 340530000 862960 736080 422290 443160 732910 852200 1107670 1016290 601020 1261280 TRUE FALSE FALSE 802470.9603 677750.34 585811.9973 1031698.876 640981.5937 747064.2285 830519.2503 784902.9525 653116.8975 945447.2784 0.848773886 0.716856831 0.619613606 1.091228353 0.677966512 0.790170161 0.878440574 0.830192196 0.690802028 1 19.85063748 -10.55573341 3.183400559 1.007856163 0.795194138 0.192674764 0.126606637 116870026.2 141767180.9 7897805.379 0.030213939 2.78E-11 10.55573341 -0.212662026 TPVS(ph)PVKFSPGDFWGR ddPTM_HeLa_A485_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 T(0.02)PVS(0.98)PVKFSPGDFWGR;T(0.27)PVS(0.73)PVKFSPGDFWGR ; 174.82 7.89E-13 3873700000 460990 571360 424970 561900 694250 674530 1055960 1142920 507330 782810 TRUE FALSE FALSE 563535.6351 638175.5818 582184.0875 592595.1742 625128.0323 709847.3478 830345.5196 862617.078 609146.4775 587669.8736 0.95893232 1.085942313 0.990665191 1.008381067 1.063740138 1.207901544 1.412945528 1.467859962 1.036545355 1 19.16464642 -6.275420779 3.12151871 1.272071982 1.017827737 0.329348235 0.140718586 0.258223243 5.168597054 0.050856778 0.046836919 5.30E-07 6.275420779 -0.254244245 TPVS(ph)PVKFSPGDFWGR ddPTM_HeLa_A486_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 T(0.001)PVS(0.999)PVKFSPGDFWGR;T(0.02)PVS(0.98)PVKFSPGDFWGR ; 207.1 1.05E-25 2591300000 831560 711140 455800 351900 835560 737810 1022900 1025340 559490 1075370 TRUE FALSE FALSE 773271.9382 654786.6765 632297.9667 819240.984 730756.2735 646786.5037 766959.6009 791892.465 607987.0437 806090.3525 0.959286928 0.812299359 0.784400861 1.016314091 0.906543877 0.802374699 0.951456122 0.982386729 0.754241806 1 19.62058203 -10.32103195 4.48748255 1.000101293 0.887167328 0.133449165 0.087453131 8.76E-05 1.33E-05 0.083719968 0.020286885 4.77E-11 10.32103195 -0.112933964 TPVSGSLKS(ph)PVPR ddPTM_HeLa_A485_30min_R1 4 TPVSGSLKSPVPR 13 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 TPVSGSLKS(1)PVPR;TPVSGSLKS(1)PVPR;TPVS(0.011)GS(0.009)LKS(0.979)PVPR;TPVSGSLKS(1)PVPR ;;; 132.51 8.23E-06 3590690000 4102090 4424120 3254490 4576620 5226400 4221110 6102240 6557310 3711990 6129690 TRUE FALSE FALSE 5014585.768 4941482.349 4458461.282 4826629.162 4706041.265 4442120.793 4798446.573 4949119.441 4456952.345 4601671.092 1.089731462 1.073845186 0.968878738 1.048886169 1.022680929 0.965327748 1.042761744 1.07550482 0.968550828 1 22.13372644 -4.612268409 7.818597802 1.01554651 1.085760094 0.38303632 0.035595101 0.223465416 16.54951667 0.008962662 0.023944068 2.44E-05 4.612268409 0.070213584 TPVSGSLKS(ph)PVPR ddPTM_HeLa_A486_30min_R1 2 TPVSGSLKSPVPR 13 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 TPVSGSLKS(1)PVPR;TPVSGS(0.002)LKS(0.998)PVPR ; 106.93 0.00019062 2463640000 2752900 2577900 1440520 918650 2341700 2505300 2908300 3009600 1876230 3019200 TRUE FALSE FALSE 2559935.926 2373617.815 1998327.922 2138663.626 2047982.151 2196221.558 2180612.579 2324379.779 2038863.127 2263172.668 1.131127095 1.048801026 0.882976341 0.944984736 0.904916438 0.970417144 0.963520199 1.027044826 0.900887129 1 21.10991523 -4.550494769 4.965190951 0.949994272 1.114836805 0.652694748 0.042912298 0.096811799 6.111312986 0.011012248 0.033893749 2.82E-05 4.550494769 0.164842533 TPVSPVKFS(ph)PGDFWGR ddPTM_HeLa_A486_30min_R1 2 TPVSPVKFSPGDFWGR 16 1 P23443-3;P23443-5;P23443-2;P23443 P23443-3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 TPVSPVKFS(1)PGDFWGR;TPVSPVKFS(1)PGDFWGR ; 135.38 4.19E-06 277090000 525400 458700 286820 240650 487390 519750 627650 572520 370480 697570 TRUE FALSE FALSE 488572.1732 422350.9414 397884.3853 560245.3618 426257.0015 455628.5294 470605.3314 442169.694 402593.5047 522893.9316 0.934361911 0.807718193 0.760927525 1.071432136 0.815188274 0.871359375 0.900001517 0.845620244 0.769933404 1 18.9961588 TQAPT(ph)KASE ddPTM_HeLa_A485_30min_R1 1 TQAPTKASE 9 1 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 TQAPT(0.554)KAS(0.446)E 72.096 0.03028 114470000 330190 259340 232030 539360 410730 307570 488660 486120 278280 664790 TRUE FALSE FALSE 403639.6264 289667.557 317867.5526 568823.8711 369836.279 323673.8896 384253.799 366898.3078 334128.2435 499070.0876 0.808783448 0.580414584 0.636919664 1.13976751 0.741050783 0.648553976 0.769939551 0.735163892 0.669501643 1 18.92888291 -10.40303811 2.914535845 1.004577815 0.748296914 0.210781716 0.146406269 51431692.17 60731054.95 1963777.477 0.037183014 3.95E-11 10.40303811 -0.256280901 TQAPT(ph)KASE ddPTM_HeLa_A486_30min_R1 2 TQAPTKASE 9 1 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 TQAPT(0.831)KAS(0.169)E;TQAPT(0.529)KAS(0.471)E ; 112.36 0.0018546 296770000 774680 783580 392430 446290 798840 862980 1148540 1012380 650490 1135420 TRUE FALSE FALSE 720378.9325 721486.2671 544389.4056 1038985.674 698642.0383 756514.3017 861163.144 781883.1741 706874.9969 851103.4417 0.846405851 0.847706908 0.639627781 1.220751349 0.820866189 0.888862933 1.0118196 0.918669971 0.830539465 1 19.69897496 -5.223397143 24.99993206 0.946448075 0.784892928 0.312785953 0.120211623 739.4013734 485905.9194 0.031765685 0.05501839 5.98E-06 5.223397143 -0.161555147 TQAPTKAS(ph)E ddPTM_HeLa_A485_30min_R1 1 TQAPTKASE 9 1 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 TQAPT(0.044)KAS(0.956)E 113.38 0.01046 339610000 597980 492140 373780 902090 799820 503950 912060 753570 459180 1181000 TRUE FALSE FALSE 730998.588 549691.492 512056.7763 951368.8925 720187.1125 530336.0427 717190.9302 568755.7759 551333.2142 886598.4347 0.824497946 0.620000522 0.577552087 1.07305501 0.812303614 0.598169388 0.808924201 0.641503248 0.62185223 1 19.75792129 TQAPTKAS(ph)E ddPTM_HeLa_A486_30min_R1 1 TQAPTKASE 9 1 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 TQAPT(0.021)KAS(0.979)E 100.09 0.025716 335030000 753930 817830 398940 465430 803030 825500 1205700 1068300 646140 1138900 TRUE FALSE FALSE 701083.4003 753022.1723 553420.252 1083544.562 702306.4894 723658.2031 904021.1074 825071.4108 702147.9354 853712.027 0.821217668 0.882056418 0.648251676 1.269215528 0.82265034 0.84766078 1.058929802 0.966451666 0.822464617 1 19.70338998 -5.186908213 24.99998865 0.960760852 0.793663903 0.276923492 0.136771236 196.1327379 65787.6098 0.036303692 0.062879835 6.50E-06 5.186908213 -0.167096949 TQAS(ph)SSPAALKPPAGR ddPTM_HeLa_A485_30min_R1 2 TQASSSPAALKPPAGR 16 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 T(0.131)QAS(0.327)S(0.271)S(0.271)PAALKPPAGR;T(0.087)QAS(0.333)S(0.29)S(0.29)PAALKPPAGR ; 81.967 0.00064019 264410000 317590 301610 227910 344230 411770 304510 407260 521060 258350 465750 TRUE FALSE FALSE 388236.7998 336880.6658 312223.3931 363034.4133 370772.733 320453.6727 320245.574 393269.218 310198.4753 349647.0965 1.110367578 0.963487669 0.892967213 1.038288082 1.060419883 0.916506031 0.915910863 1.124760428 0.887175894 1 18.41554 -6.259787801 24.99494419 0.973358187 1.00507412 0.062401914 0.081940589 695.7615769 10529695.56 0.028195032 0.026774412 5.50E-07 6.259787801 0.031715934 TQASS(ph)SPAALKPPAGR ddPTM_HeLa_A486_30min_R1 1 TQASSSPAALKPPAGR 16 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 T(0.021)QAS(0.08)S(0.45)S(0.45)PAALKPPAGR 103.17 0.00016598 270900000 310170 273250 168070 109920 251110 265450 317540 315730 195660 334650 TRUE FALSE FALSE 288428.6847 251596.6748 233151.2051 255899.315 219613.4423 232701.4779 238088.1334 243845.1713 212619.9663 250851.4618 1.1497987 1.002970734 0.929439292 1.020122878 0.875472045 0.927646489 0.949119976 0.972069964 0.847593093 1 17.93647382 -3.231626663 0.988082075 0.934777576 2.405402254 0.622766963 0.049349476 7.761237191 1.286398085 0.015067488 19.51352163 0.000586642 3.231626663 1.470624678 TQDPS(ph)SPGTT(ph)PPQAR ddPTM_HeLa_A485_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 2 0 TQDPS(0.545)S(0.441)PGT(0.182)T(0.831)PPQAR 87.566 0.0035173 717390000 226230 269580 272360 253050 401590 288620 388040 403700 300340 344240 TRUE FALSE FALSE 276554.083 301105.036 373117.2978 266873.4807 361606.2895 303731.6969 305132.084 304691.942 360615.4831 258427.3033 1.070142665 1.165144055 1.443799835 1.032682992 1.399257296 1.175308077 1.180726959 1.179023803 1.395423311 1 17.97939898 -9.04954393 12.50131722 1.000008871 1.226484412 0.206127532 0.133546418 0 0 0.122016035 0.029593235 8.92E-10 9.04954393 0.226475541 TQDPS(ph)SPGTT(ph)PPQAR ddPTM_HeLa_A486_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 2 0 TQDPS(0.501)S(0.485)PGT(0.233)T(0.78)PPQAR 79.652 0.012416 768250000 503030 557040 416100 206580 615550 506200 643070 584000 482230 622070 TRUE FALSE FALSE 467770.1946 512898.1217 577225.0635 480928.68 538341.9792 443750.1907 482167.0843 451035.9486 524030.0847 466299.623 1.003153705 1.099932525 1.237884474 1.031372655 1.154497994 0.951641753 1.034028467 0.967266381 1.123805508 1 18.83089774 -6.255208699 24.99338294 1.014470073 1.108317428 0.269833854 0.073954189 690.0470722 2768014.361 0.024267756 0.023665213 5.56E-07 6.255208699 0.093847355 TQDPS(ph)SPGTTPPQAR ddPTM_HeLa_A485_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TQDPS(0.527)S(0.235)PGT(0.235)T(0.003)PPQAR 151.07 4.93E-08 1601400000 1088500 1335800 1272900 1147300 1680400 1304800 1646400 1754600 1266100 1487100 TRUE FALSE FALSE 1330633.07 1492010.19 1743798.68 1209974.094 1513093.476 1373117.31 1294633.19 1324281.599 1520194.657 1116393.338 1.191903449 1.336455655 1.56199309 1.08382418 1.355340832 1.229958352 1.159656858 1.186214172 1.361701656 1 20.09041399 -14 0.150893343 0.027762843 1.357213595 0.286039145 0.12936516 172.128559 1.536365483 50.21937367 0.644418589 1.00E-14 14 1.329450752 TQDPSS(ph)PGT(ph)TPPQAR ddPTM_HeLa_A486_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 2 0 TQDPS(0.024)S(0.976)PGT(0.92)T(0.08)PPQAR 138.28 1.39E-05 1023000000 461960 527520 460630 205250 613130 523600 625500 633530 450280 625380 TRUE FALSE FALSE 429578.9896 485717.394 638998.2721 477832.3728 536225.5182 459003.5556 468993.2841 489289.0489 489310.6329 468780.7775 0.91637501 1.036129076 1.363106814 1.019308802 1.143872667 0.979143296 1.000453318 1.043748107 1.04379415 1 18.83855389 -6.263269976 24.98223786 1.015351127 1.103051211 0.122799417 0.109095684 364.4470569 4973577.747 0.038648385 0.035849999 5.45E-07 6.263269976 0.087700084 TQDPSS(ph)PGTT(ph)PPQAR ddPTM_HeLa_A485_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 2 0 TQDPS(0.02)S(0.98)PGT(0.04)T(0.961)PPQAR 153.22 9.68E-08 982510000 336130 405720 337920 442320 493030 380360 569400 564200 385720 631940 TRUE FALSE FALSE 410900.9589 453165.4247 462930.67 466482.8216 443942.2021 400275.0615 447743.0384 425829.0654 463130.466 474408.988 0.866132323 0.955220993 0.975805016 0.983292546 0.935779493 0.843734144 0.943791222 0.897599068 0.976226163 1 18.85577182 -7.944415045 5.811927001 0.999786775 0.928219504 0.263324047 0.042745986 0.250369992 16.36249843 0.04335684 0.011263976 1.14E-08 7.944415045 -0.07156727 TQDPSS(ph)PGTTPPQAR ddPTM_HeLa_A485_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TQDPSS(0.879)PGT(0.114)T(0.006)PPQAR 142.32 9.79E-08 1721200000 1243700 1748300 1746200 1379200 2180900 1642200 2158000 2122000 1662000 2144900 TRUE FALSE FALSE 1520356.774 1952748.477 2392192.045 1454542.204 1963761.938 1728183.053 1696925.671 1601576.173 1995548.155 1610215.904 0.94419436 1.212724624 1.485634342 0.903321225 1.219564366 1.073261696 1.053849777 0.994634427 1.239304711 1 20.61882271 -5.292916306 24.99835296 1.074713322 1.214038821 0.156779981 0.153773041 1247.962046 991104.0585 0.042857645 0.06357574 5.09E-06 5.292916306 0.139325499 TQDPSS(ph)PGTTPPQAR ddPTM_HeLa_A486_30min_R1 2 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TQDPS(0.003)S(0.997)PGTTPPQAR;TQDPS(0.038)S(0.925)PGT(0.038)TPPQAR ; 224.97 9.80E-34 3764200000 2123980 2251490 1910540 734380 2537400 1934960 2337100 2310100 1856130 2152160 TRUE FALSE FALSE 1975099.97 2073073.733 2650352.254 1709673.754 2219135.632 1696244.308 1752332.861 1784140.659 2017020.843 1613245.128 1.224302455 1.285033314 1.642870143 1.059773077 1.375572499 1.051448586 1.086216118 1.105932774 1.250287888 1 20.62153424 -5.9534683 1.439506305 1.107682062 1.347988859 0.308579394 0.153363203 0.504080109 2.156534444 0.061127138 0.071260412 1.11E-06 5.9534683 0.240306798 TQDQISNIK ddPTM_HeLa_A486_30min_R1 1 TQDQISNIK 9 0 Q14847;C9J9W2;Q14847-3;Q14847-2 Q14847 LASP1 LIM and SH3 domain protein 1 0 0 98.523 0.022955 338170000 438160 800900 546070 452420 1145600 1006900 1253400 1394600 631260 903550 FALSE FALSE TRUE 407447.2467 737433.7672 757522.9283 1053256.624 1001908.166 882678.9154 939786.0629 1077080.024 685978.1251 677295.1989 0.601580001 1.088792255 1.11845312 1.555092411 1.479278411 1.303241064 1.387557544 1.590266734 1.012820003 1 19.36942524 -4.264824526 1.360744026 1.357327132 0.295424474 0.540263627 0.197972473 0.907199938 1.499175191 0.05548448 1.329628103 5.43E-05 4.264824526 -1.061902658 TQEDEEEISTS(ph)PGVSEFVSDAFDACNLNQEDLRK ddPTM_HeLa_A485_30min_R1 3 TQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRK 34 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 TQEDEEEIS(0.01)T(0.05)S(0.94)PGVSEFVSDAFDACNLNQEDLRK;TQEDEEEIS(0.003)T(0.047)S(0.949)PGVS(0.001)EFVSDAFDACNLNQEDLRK;TQEDEEEIS(0.026)T(0.165)S(0.805)PGVS(0.003)EFVSDAFDACNLNQEDLRK ;; 131.78 1.86E-06 487780000 59256 46209 48292.2 85637 85660 62237 95597 92278 58621 112191 TRUE FALSE FALSE 72437.29277 51612.74059 66157.49439 90315.13247 77131.38963 65495.63308 75171.91999 69646.67581 70385.697 84223.84842 0.860056791 0.612804349 0.78549598 1.072322557 0.915790374 0.777637621 0.892525352 0.826923456 0.835697944 1 16.36194118 TQEDEEEISTS(ph)PGVSEFVSDAFDACNLNQEDLRK ddPTM_HeLa_A486_30min_R1 3 TQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRK 34 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 TQEDEEEIS(0.001)T(0.011)S(0.986)PGVS(0.002)EFVSDAFDACNLNQEDLRK;TQEDEEEISTS(1)PGVSEFVSDAFDACNLNQEDLRK;TQEDEEEIST(0.002)S(0.998)PGVSEFVSDAFDACNLNQEDLRK ;; 278.96 3.83E-78 978960000 357591 387450 217603 221709 393871 404479 515308 503942 300888 506892 TRUE FALSE FALSE 332525.7175 356747.0509 301864.7092 516149.7566 344468.0265 354578.4934 386372.488 389205.4076 326969.2141 379962.9439 0.875153019 0.938899587 0.794458286 1.358421301 0.906583213 0.9331923 1.016868866 1.024324645 0.860529216 1 18.5354992 TQEISRPNS(ph)PSEGEGESSDSR ddPTM_HeLa_A486_30min_R1 1 TQEISRPNSPSEGEGESSDSR 21 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 TQEIS(0.003)RPNS(0.992)PS(0.005)EGEGESSDSR 108.49 4.71E-05 487890000 133000 101310 65428 31915 107620 96701 83417 102040 94533 98708 TRUE FALSE FALSE 123677.3868 93281.82664 90763.47382 74299.73289 94121.29608 84771.0138 62545.1843 78807.71952 102727.1966 73990.87432 1.67152217 1.260720697 1.226684705 1.004174279 1.272066278 1.145695528 0.845309437 1.065100531 1.388376573 1 16.17505973 -2.143682754 0.868560103 1.098559029 25.29599135 0.578154953 0.143957246 59.15854192 1.380806075 0.049685913 2663.892353 0.007183188 2.143682754 24.19743232 TQFVSPWKEGDELEDNGKNFYES(ph)DDDQKEK ddPTM_HeLa_A486_30min_R1 1 TQFVSPWKEGDELEDNGKNFYESDDDQKEK 30 3 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 TQFVSPWKEGDELEDNGKNFYES(1)DDDQKEK 145.03 2.20E-09 137050000 31781 21346 6899.3 72726 30338 48307 109610 105390 18825 118090 TRUE FALSE FALSE 29553.31602 19654.46522 9570.89373 169309.8034 26532.72515 42347.37349 82184.41866 81394.99765 20456.76616 88519.49536 0.333862229 0.222035441 0.108121874 1.912683784 0.299738776 0.478396011 0.928432978 0.919514931 0.231098992 1 16.43370761 TQHIQQPR ddPTM_HeLa_A486_30min_R1 1 TQHIQQPR 8 0 P51397 P51397 DAP Death-associated protein 1 0 0 80.239 0.031249 17854000 24317 22963 18351 9137.2 32438 25785 26547 24168 22145 26871 FALSE FALSE TRUE 22612.50387 21143.32825 25456.99866 21271.86337 28369.32357 22603.90886 19904.65981 18665.47398 24064.54643 20142.3267 1.122636139 1.049696421 1.263855911 1.056077765 1.408443225 1.122209425 0.988200624 0.92667914 1.194725256 1 14.29794272 -6.582992871 6.122056087 1.023898654 1.179580857 0.276260658 0.116399799 0.268732338 19.96513411 0.044373036 0.034298972 2.61E-07 6.582992871 0.155682203 TQHLSNDHICYFLYQILR ddPTM_HeLa_A485_30min_R1 2 TQHLSNDHICYFLYQILR 18 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 0 0 ; ; 173.27 2.33E-15 44998000 13641.6 16253.2 22850.1 4764.9 27518.2 11166.7 17258.4 14023.1 13955.9 14159.8 FALSE FALSE TRUE 16676.12686 18153.87036 31303.30286 5025.194422 24778.39139 11751.37115 13571.00185 10583.91274 16756.72112 10630.02245 1.568776259 1.707792287 2.944801199 0.472736012 2.330982037 1.105488836 1.27666728 0.995662313 1.576358018 1 13.37585702 -6.034259594 0.922387928 1.175682847 1.900241326 0.166765689 0.618888463 1.024214955 1.898874816 0.32898587 0.38492927 9.24E-07 6.034259594 0.724558478 TQHLSNDHICYFLYQILR ddPTM_HeLa_A486_30min_R1 1 TQHLSNDHICYFLYQILR 18 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 0 0 173.27 2.33E-15 24032000 10645 13081 12892 1671.7 15020 9459.9 10277 11093 14824 4505.4 FALSE FALSE TRUE 9898.840471 12044.41392 17884.12766 3891.802083 13136.05154 8292.833719 7705.585901 8567.366058 16108.95626 3377.218515 2.931063071 3.566370925 5.295519843 1.152369047 3.889606635 2.45552181 2.281636757 2.53681129 4.769888648 1 11.72161981 -5.257667424 24.99199372 2.684211652 3.894523093 0.20810596 1.192516741 566.5119962 3753544.611 0.316129394 0.521676653 5.53E-06 5.257667424 1.210311441 TQLAS(ph)WSDPTEETGPVAGILDTETLEK ddPTM_HeLa_A485_30min_R1 1 TQLASWSDPTEETGPVAGILDTETLEK 27 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 T(0.068)QLAS(0.431)WS(0.431)DPT(0.068)EET(0.002)GPVAGILDTETLEK 105.46 0.00038736 34459000 19470 17642 12566 17721 18110 17098 27064 24370 12161 21628 TRUE FALSE FALSE 23801.03433 19705.07844 17214.68631 18689.05336 16306.90481 17993.22484 21281.55531 18393.21929 14601.60115 16236.53763 1.46589346 1.213625644 1.060243674 1.151049182 1.004333878 1.108193461 1.310720043 1.132828914 0.899305103 1 13.9869564 -4.324716957 2.418481485 1.096606029 1.523437696 0.552312109 0.104509243 0.370168479 2.946430757 0.028208541 0.309940548 4.73E-05 4.324716957 0.426831667 TQLAS(ph)WSDPTEETGPVAGILDTETLEK ddPTM_HeLa_A486_30min_R1 1 TQLASWSDPTEETGPVAGILDTETLEK 27 0 Q15149;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4 Q15149;Q15149-3;Q15149-4 PLEC Plectin 1 0 T(0.103)QLAS(0.49)WS(0.341)DPT(0.065)EETGPVAGILDTETLEK 120.15 6.78E-05 19445000 31954 25619 13045 9104.1 25935 20747 30032 24666 17488 32104 TRUE FALSE FALSE 29714.18961 23588.85714 18096.37336 21194.8049 22681.99047 18187.44608 22517.67595 19050.09025 19003.87392 24064.94944 1.234749721 0.98021636 0.751980527 0.880733406 0.94253223 0.755764982 0.93570427 0.791611481 0.789690997 1 14.55464577 -4.365329982 3.037850337 0.8519376 1.256706573 0.664504239 0.081540508 0.164692461 2.414611685 0.01983306 0.138753757 4.31E-05 4.365329982 0.404768973 TQLS(ph)PSIK ddPTM_HeLa_A485_30min_R1 2 TQLSPSIK 8 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TQLS(0.971)PS(0.029)IK;TQLS(0.935)PS(0.065)IK ; 123.67 0.00063346 696380000 784910 572280 480170 1306290 826320 598920 906820 691430 650910 1609470 TRUE FALSE FALSE 959510.5216 639203.1678 657804.8645 1377649.315 744048.6794 630278.5251 713070.499 521855.7084 781541.6665 1208258.749 0.79412669 0.529028379 0.544423837 1.140193949 0.615802435 0.521642012 0.590163737 0.431907246 0.646833029 1 20.20449801 -10.47126897 6.51424334 1.000128836 0.641633104 0.240463173 0.188592903 0.000366581 2.98E-05 0.189690099 0.045990245 3.38E-11 10.47126897 -0.358495732 TQLS(ph)PSIK ddPTM_HeLa_A486_30min_R1 2 TQLSPSIK 8 0 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TQLS(0.968)PS(0.032)IK;TQLS(0.999)PS(0.001)IK ; 155.33 0.0001342 758200000 1275950 1434370 694180 554060 1038010 1577640 1698820 1560700 1234120 1568530 TRUE FALSE FALSE 1186512.494 1320705.297 962985.0868 1289879.681 907813.1067 1383006.817 1273757.268 1205362.68 1341094.515 1175759.879 1.009145248 1.123278079 0.819032104 1.097060466 0.772107573 1.176266381 1.083348132 1.025177591 1.14061939 1 20.16516202 TQLS(ph)PSIKR ddPTM_HeLa_A485_30min_R1 4 TQLSPSIKR 9 1 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TQLS(0.95)PS(0.05)IKR;TQLS(0.987)PS(0.013)IKR;TQLS(0.99)PS(0.01)IKR;TQLS(0.997)PS(0.003)IKR ;;; 146.36 5.51E-05 5168350000 5134420 4243910 3682370 7143900 6729200 4707430 7242000 6294600 4521140 8841800 TRUE FALSE FALSE 6276554.015 4740198.357 5044631.899 7534153.168 6059217.22 4953903.756 5694687.538 4750839.48 5428491.328 6637701.981 0.945591416 0.714132447 0.759996745 1.135054449 0.912848639 0.746328137 0.857930584 0.71573558 0.817826914 1 22.66225243 -6.239460445 23.89697879 0.811695599 0.8895586 0.055407467 0.127524891 1350.807491 1468688.506 0.043695202 0.043650571 5.76E-07 6.239460445 0.077863001 TQLS(ph)PSIKR ddPTM_HeLa_A486_30min_R1 6 TQLSPSIKR 9 1 H0Y9Y2;Q8NFC6 H0Y9Y2;Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TQLS(0.995)PS(0.004)IKR;TQLS(0.853)PS(0.147)IKR;TQLS(0.892)PS(0.108)IKR;TQLS(0.992)PS(0.008)IKR;TQLS(0.97)PS(0.03)IKR;TQLS(0.827)PS(0.172)IKR ;;;;; 146.08 5.60E-05 6443380000 11165130 11081720 6360980 4826860 10395890 11782170 14369000 13397800 9567110 13957900 TRUE FALSE FALSE 10382512.04 10203564.15 8824121.809 11237174.02 9091940.538 10328605.66 10773724.22 10347413.41 10396394.8 10462750.99 0.99233099 0.975227658 0.843384481 1.074017152 0.868981834 0.987178771 1.029721937 0.988976362 0.993657864 1 23.3187589 -6.508174678 24.68401414 1.003067549 0.950530812 0.145047487 0.060616505 1122.339214 1884098.648 0.020839952 0.017747747 3.10E-07 6.508174678 -0.052536737 TQLS(ph)QGR ddPTM_HeLa_A485_30min_R1 2 TQLSQGR 7 0 Q8ND56;Q8ND56-2 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 T(0.001)QLS(0.999)QGR;TQLS(1)QGR ; 98.055 0.0049941 266510000 435420 492010 475910 453550 511420 401190 433530 412840 470050 574210 TRUE FALSE FALSE 532277.6768 549546.2896 651968.9133 478326.2881 460501.2291 422195.688 340902.7739 311590.3427 564384.7234 431070.0146 1.234782422 1.274842302 1.512443202 1.109625518 1.06827479 0.97941326 0.790829244 0.722830009 1.309264631 1 18.71756269 -5.679970893 1.995266775 0.940375233 1.331611567 0.479738523 0.165444962 0.267929268 2.188103569 0.055915673 0.077277075 2.09E-06 5.679970893 0.391236335 TQLS(ph)QGR ddPTM_HeLa_A486_30min_R1 2 TQLSQGR 7 0 Q8ND56;Q8ND56-2 Q8ND56 LSM14A Protein LSM14 homolog A 1 0 TQLS(1)QGR;T(0.002)QLS(0.998)QGR ; 72.365 0.013999 373470000 320718 399602 369350 152197 398290 374110 383691 373366 378478 400554 TRUE FALSE FALSE 298237.3244 367936.0822 512372.2115 354322.3076 348332.7543 327956.1119 287687.4535 288358.7123 411284.7778 300252.6712 0.99328783 1.225421511 1.706470119 1.180080451 1.160132074 1.092267091 0.958151188 0.960386834 1.369795566 1 18.19581756 -5.722120092 2.929309167 1.075572691 1.314037096 0.185292619 0.198919771 0.414285398 7.267326422 0.065375139 0.083725935 1.90E-06 5.722120092 0.238464405 TQLWASEPGT(ph)PPLPTSLPSQNPILK ddPTM_HeLa_A485_30min_R1 2 TQLWASEPGTPPLPTSLPSQNPILK 25 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 TQLWAS(0.003)EPGT(0.997)PPLPTSLPSQNPILK;TQLWASEPGT(1)PPLPTSLPSQNPILK ; 188.54 2.20E-20 4713500000 1496360 1430230 1069210 1853000 2091210 1553650 2509470 2393890 1472190 2526580 TRUE FALSE FALSE 1829220.12 1597482.957 1464755.273 1954224.698 1883001.79 1634996.712 1973301.234 1806784.724 1767645.029 1896750.104 0.964397005 0.842221099 0.77224473 1.030301616 0.992751647 0.86199901 1.040359101 0.95256867 0.931933535 1 20.85509819 -5.269402261 24.99496243 0.969892464 0.857880959 0.388014268 0.065077095 613.6033317 1926060.149 0.018341093 0.027761134 5.38E-06 5.269402261 -0.112011505 TQLWASEPGT(ph)PPLPTSLPSQNPILK ddPTM_HeLa_A486_30min_R1 2 TQLWASEPGTPPLPTSLPSQNPILK 25 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 TQLWASEPGT(1)PPLPTSLPSQNPILK;TQLWASEPGT(1)PPLPTSLPSQNPILK ; 207.2 1.67E-28 2974300000 2055080 2133400 1451260 874130 2209380 2359100 2726200 2681700 1843300 2773100 TRUE FALSE FALSE 1911029.504 1964341.614 2013226.738 2035018.816 1932258.959 2068058.228 2044075.925 2071135.451 2003078.728 2078697.71 0.919339784 0.944986664 0.968503851 0.978987376 0.929552647 0.99488166 0.983344483 0.996362021 0.963621944 1 20.98724854 -1 0.294681903 0.99045917 0.429937199 0.553353312 0.018059678 41.68551757 0.593152291 0.018943141 12.2430233 0.1 1 -0.560521971 TQLYAALQQIENLRK ddPTM_HeLa_A486_30min_R1 1 TQLYAALQQIENLRK 15 1 Q6ZU80;Q6ZU80-1;H0YJE3 Q6ZU80 CEP128 Centrosomal protein of 128 kDa 0 0 36.77 0.037931 6640900 34743 16633 11813 2887.3 18348 16460 24299 27738 18756 29446 FALSE FALSE TRUE 32307.69511 15314.9405 16387.30996 6721.780316 16046.62275 14429.33255 18219.13319 21422.66292 20381.78518 22072.52994 1.463706027 0.693846176 0.742430071 0.304531485 0.726995174 0.653723547 0.825421157 0.970557656 0.9234005 1 14.42996438 -7.091888374 3.610771777 0.959345792 0.737180083 0.093547149 0.269790998 0.579423223 13.98908285 0.140626162 0.078010065 8.09E-08 7.091888374 -0.222165708 TQMAEVLPS(ph)PR ddPTM_HeLa_A485_30min_R1 4 TQMAEVLPSPR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR ;;; 216.34 9.77E-18 5152000000 2122660 2510350 2220480 2374200 3345060 2125550 3018150 3414240 2306680 3299300 TRUE FALSE FALSE 2594838.394 2803913.595 3041927.954 2503896.534 3012014.081 2236840.511 2373297.596 2576892.287 2769609.518 2476845.229 1.047638489 1.132050385 1.228146159 1.010921678 1.21606875 0.90310064 0.958193741 1.040392939 1.118200477 1 21.24007229 -6.258348803 24.99992178 1.003640631 1.126421919 0.369129733 0.080389587 313.5461484 2536304.826 0.027367333 0.026255667 5.52E-07 6.258348803 0.122781289 TQMAEVLPS(ph)PR ddPTM_HeLa_A486_30min_R1 5 TQMAEVLPSPR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR ;;;; 148.62 7.42E-07 5176100000 2047390 2293730 1797750 716400 2122620 2018910 2496100 2371710 2090670 2412540 TRUE FALSE FALSE 1903878.534 2111966.481 2493886.945 1667815.405 1856381.207 1769837.411 1871549.379 1831723.407 2271890.959 1808424.281 1.052783107 1.167848996 1.379038631 0.92224785 1.026518625 0.978662712 1.034906133 1.012883661 1.256282048 1 20.78630176 -5.278007872 24.99896801 1.031144764 1.196686148 0.324685653 0.110195663 945.3374162 1426347.443 0.031201721 0.046426776 5.27E-06 5.278007872 0.165541383 TQPDGTSVPGEPAS(ph)PISQR ddPTM_HeLa_A485_30min_R1 8 TQPDGTSVPGEPASPISQR 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(0.999)PIS(0.001)QR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR ;;;;;;; 368.83 7.00E-130 23359960000 3650777 3866041 4069176 4233484 5390323 3617365 4883905 3718249 3733913 5437204 TRUE FALSE FALSE 4462879.749 4318140.865 5574533.535 4464748.511 4853643.516 3806764.638 3840418.799 2806342.603 4483275.09 4081809.107 1.093358271 1.057898778 1.365701675 1.093816098 1.189091255 0.932617018 0.940861931 0.687524215 1.098354914 1 21.96077728 -6.295720568 5.84486961 0.911228788 1.162286866 0.449739001 0.125147483 0.169545892 17.43127224 0.043244512 0.038794261 5.06E-07 6.295720568 0.251058078 TQPDGTSVPGEPAS(ph)PISQR ddPTM_HeLa_A486_30min_R1 8 TQPDGTSVPGEPASPISQR 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGT(0.001)S(0.099)VPGEPAS(0.9)PIS(0.001)QR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR ;;;;;;; 398.58 1.54E-146 39126690000 3727618 3671994 2775496 1219586 3792188 3448791 3919595 3935563 3243733 3804663 TRUE FALSE FALSE 3466331.228 3381011.822 3850242.382 2839257.842 3316536.42 3023314.231 2938870.874 3039521.218 3524902.388 2851950.621 1.2154247 1.185508542 1.350038235 0.99554944 1.162901067 1.060086458 1.030477475 1.06576923 1.235961928 1 21.44351757 -5.265673098 24.99188926 1.082144627 1.243842297 0.49328264 0.079586446 306.7699552 1810882.861 0.021679706 0.033480765 5.42E-06 5.265673098 0.16169767 TQPDGTSVPGEPAS(ph)PISQRLPPK ddPTM_HeLa_A485_30min_R1 1 TQPDGTSVPGEPASPISQRLPPK 23 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 TQPDGTSVPGEPAS(0.989)PIS(0.01)QRLPPK 82.65 0.0018286 559670000 145320 219870 137130 192080 208210 240130 323690 377250 124690 272960 TRUE FALSE FALSE 177645.9327 245581.8839 187860.0935 202572.844 187479.8813 252702.8355 254530.9872 284728.846 149714.1393 204916.0955 0.866920347 1.198450924 0.916765923 0.988564825 0.914910471 1.233201496 1.242122961 1.389489905 0.730611907 1 17.64467378 -6.25925734 24.94891363 1.151118229 0.986701064 0.116188483 0.184590517 365.791712 4182385.98 0.060795017 0.058017458 5.50E-07 6.25925734 -0.164417165 TQPDGTSVPGEPAS(ph)PISQRLPPKVESLESLYFTPIPAR ddPTM_HeLa_A485_30min_R1 1 TQPDGTSVPGEPASPISQRLPPKVESLESLYFTPIPAR 38 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 TQPDGTSVPGEPAS(0.99)PIS(0.01)QRLPPKVESLESLYFTPIPAR 293.05 1.89E-94 1163100000 82899 173390 85465 48140 162760 217680 281330 549020 80710 81199 TRUE FALSE FALSE 101339.5966 193666.4522 117082.06 50769.7663 146555.0429 229077.3882 221221.5472 414371.9842 96907.75668 60957.58366 1.662460853 3.177069047 1.920713601 0.832870387 2.404213457 3.757980131 3.62910624 6.797710134 1.589757186 1 15.8955181 -6.184185131 4.080846787 3.73963263 1.957420615 0.140836251 1.56140484 0.355868095 11.26822854 0.519666733 0.514051824 6.54E-07 6.184185131 -1.782212015 TQPDGTSVPGEPAS(ph)PISQRLPPKVESLESLYFTPIPAR ddPTM_HeLa_A486_30min_R1 1 TQPDGTSVPGEPASPISQRLPPKVESLESLYFTPIPAR 38 2 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 TQPDGTSVPGEPAS(0.982)PIS(0.018)QRLPPKVESLESLYFTPIPAR 213.31 1.04E-30 271520000 40534 23226 17469 14629 43130 21490 36531 38848 15875 42916 TRUE FALSE FALSE 37692.77592 21385.48717 24233.46464 34057.05131 37720.23323 18838.78229 27390.55741 30003.15845 17251.05778 32169.55426 1.17169096 0.664774121 0.753304334 1.058673398 1.172544479 0.585609056 0.851443486 0.932656953 0.536254175 1 14.97340833 -6.269349566 24.95210887 0.781374485 0.941095209 0.166359632 0.201541021 1317.136202 4154797.658 0.071549654 0.064216916 5.38E-07 6.269349566 0.159720724 TQPSMVSNPGSCSDPQPS(ph)PEMKPHSYLDAIR ddPTM_HeLa_A485_30min_R1 2 TQPSMVSNPGSCSDPQPSPEMKPHSYLDAIR 31 1 C9J494;Q9H000-2;Q9H000 C9J494 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 1 0 TQPSMVSNPGSCSDPQPS(1)PEMKPHSYLDAIR;TQPSMVSNPGSCSDPQPS(0.999)PEMKPHSYLDAIR ; 137.44 4.95E-07 569870000 156189 144066 108667 179053 199805 152731 229420 210790 127126 247220 TRUE FALSE FALSE 190932.7042 160913.2655 148867.4453 188834.212 179911.7126 160727.759 180402.5428 159093.422 152639.0221 185592.6037 1.02877324 0.867024128 0.802119493 1.017466258 0.969390531 0.866024592 0.972035195 0.857218546 0.822441299 1 17.50177969 -9.492807516 6.187481732 0.999999999 0.910551723 0.107055103 0.076741128 98072550.5 41.67062987 0.107244598 0.018668888 3.22E-10 9.492807516 -0.089448276 TQPSMVSNPGSCSDPQPS(ph)PEMKPHSYLDAIR ddPTM_HeLa_A486_30min_R1 1 TQPSMVSNPGSCSDPQPSPEMKPHSYLDAIR 31 1 C9J494;Q9H000-2;Q9H000 C9J494 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 1 0 TQPSMVSNPGSCSDPQPS(1)PEMKPHSYLDAIR 157.86 1.51E-10 443190000 225080 212300 128580 78910 205740 215020 244640 232060 183620 283180 TRUE FALSE FALSE 209303.0543 195476.5748 178369.6195 183706.4679 179934.1708 188493.0186 183428.4845 179225.0038 199536.3294 212269.8848 0.986023309 0.920886988 0.840296397 0.865438204 0.847666973 0.887987567 0.864128629 0.844326099 0.940012426 1 17.69554018 -11.04453256 6.215644688 1.219130217 0.88414796 0.349925764 0.045226491 0.038096429 0.000272945 0.012147315 0.010904834 9.03E-12 11.04453256 -0.334982257 TQPSSGVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_HeLa_A485_30min_R1 1 TQPSSGVDSAVGTLPATSPQSTSVQAK 27 0 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 Q13428 TCOF1 Treacle protein 1 0 TQPSSGVDSAVGTLPAT(0.08)S(0.82)PQS(0.044)T(0.044)S(0.011)VQAK 125 6.69E-06 178710000 65409 52563 42351 76665 82913 60705 92805 91703 62338 100070 TRUE FALSE FALSE 79959.00639 58709.78561 58018.39727 80853.01482 74657.89059 63883.41993 72976.4536 69212.69547 74848.6648 75124.39065 1.064354808 0.781500989 0.772297742 1.076255183 0.993790298 0.85036856 0.97140826 0.921307912 0.996329743 1 16.19699376 -7.12239824 0.305465984 1.005999132 0.892402743 0.051655155 0.100373215 5.03205202 1.525397886 0.175828369 0.205635741 7.54E-08 7.12239824 -0.113596389 TQPSSGVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_HeLa_A486_30min_R1 2 TQPSSGVDSAVGTLPATSPQSTSVQAK 27 0 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 Q13428 TCOF1 Treacle protein 1 0 TQPSSGVDSAVGTLPAT(0.046)S(0.917)PQS(0.017)T(0.017)S(0.004)VQAK;TQPSSGVDSAVGTLPAT(0.023)S(0.938)PQS(0.023)T(0.013)S(0.003)VQAK ; 223.12 2.05E-38 437620000 351580 348040 207500 142481 323880 352870 414120 429600 297800 453020 TRUE FALSE FALSE 326936.0576 320460.0429 287849.557 331702.9686 283255.9503 309336.4871 310502.7959 331789.4581 323613.5438 339580.8433 0.962763548 0.943692935 0.847661353 0.97680118 0.834134068 0.910936212 0.914370766 0.977055875 0.952979387 1 18.37339555 -7.24581891 6.644334138 0.973935076 0.910807792 0.307212058 0.043750977 0.19695725 43.40552211 0.02132439 0.01158305 5.68E-08 7.24581891 -0.063127284 TQQLHPVLQKPSVFGNDS(ph)DDDDETSVSESLQR ddPTM_HeLa_A485_30min_R1 3 TQQLHPVLQKPSVFGNDSDDDDETSVSESLQR 32 1 Q9H0G5 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 1 0 TQQLHPVLQKPSVFGNDS(1)DDDDETSVSESLQR;TQQLHPVLQKPSVFGNDS(1)DDDDETSVSESLQR;TQQLHPVLQKPSVFGNDS(1)DDDDETSVSESLQR ;; 288.46 6.32E-79 5217300000 526897 452912 529760 872686 906220 549010 740850 789970 596740 1067390 TRUE FALSE FALSE 644103.4199 505876.1186 725740.2692 920358.6264 815993.5549 577755.3147 582561.3453 596228.6189 716500.2444 801309.3169 0.803813716 0.631311914 0.905693037 1.148568483 1.018325305 0.721014098 0.727011821 0.744067998 0.894161879 1 19.61199973 -8.998876597 14.31195743 0.99999997 0.843467571 0.092644794 0.1466708 0 0 0.159264972 0.03862743 1.00E-09 8.998876597 -0.156532399 TQQLHPVLQKPSVFGNDS(ph)DDDDETSVSESLQR ddPTM_HeLa_A486_30min_R1 1 TQQLHPVLQKPSVFGNDSDDDDETSVSESLQR 32 1 Q9H0G5 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 1 0 TQQLHPVLQKPSVFGNDS(1)DDDDETSVSESLQR 207.16 1.63E-29 2179700000 492370 592840 268360 169670 388280 510670 607000 572120 443490 665240 TRUE FALSE FALSE 457857.4056 545861.1993 372276.1789 395000.3346 339578.3018 447668.7275 455122.1798 441860.7653 481932.0703 498659.574 0.918176306 1.094657012 0.746553758 0.792124237 0.680982216 0.897744174 0.912691149 0.886097026 0.966455064 1 18.92769572 -7.678614539 1.192204413 0.999373907 0.854877359 0.173907953 0.105626372 0.891411365 2.47531893 0.108100052 0.035791239 2.10E-08 7.678614539 -0.144496547 TQQS(ph)PISNGSPELGIK ddPTM_HeLa_A486_30min_R1 1 TQQSPISNGSPELGIK 16 0 Q15723-2;Q15723-3;Q15723-1;Q15723 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 TQQS(1)PISNGSPELGIK 279.5 3.25E-69 0 188330 170770 99181 68710 174230 172380 221820 195070 124670 193170 TRUE FALSE FALSE 175129.0395 157237.5633 137586.5394 159960.3524 152376.4488 151113.5082 166318.2898 150656.8193 135476.496 144798.9747 1.209463257 1.085902463 0.950190011 1.104706389 1.052330993 1.043608966 1.148615107 1.040455015 0.935617785 1 17.14369186 -4.326150017 3.730769502 1.042286213 1.21726787 0.422328444 0.061095408 0.228562686 5.536812971 0.015534811 0.095976947 4.72E-05 4.326150017 0.174981657 TQRLS(ph)AETWDLLR ddPTM_HeLa_A485_30min_R1 3 TQRLSAETWDLLR 13 1 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 T(0.103)QRLS(0.896)AET(0.002)WDLLR;TQRLS(1)AETWDLLR;T(0.014)QRLS(0.986)AETWDLLR ;; 168.08 2.74E-12 179988000 271970 231252 199371 410485 290034 195978 293929 232630 231123 458446 TRUE FALSE FALSE 332468.7882 258294.9098 273126.6294 432908.7561 261157.1966 206239.105 231128.668 175577.1278 277507.2661 344163.8493 0.966018915 0.750499828 0.793594766 1.257856562 0.758816468 0.599246857 0.671565792 0.510155637 0.806323112 1 18.39273604 -5.985851892 24.99969251 0.683425445 0.92904238 0.258110503 0.176715004 296.2325355 523439.7127 0.054135011 0.061357918 1.03E-06 5.985851892 0.245616936 TQRLS(ph)AETWDLLR ddPTM_HeLa_A486_30min_R1 2 TQRLSAETWDLLR 13 1 A0A0A0MSK4;A0A0A0MRC4;Q86YR5-4;Q86YR5 A0A0A0MSK4 GPSM1 G-protein-signaling modulator 1 1 0 T(0.003)QRLS(0.997)AETWDLLR;T(0.005)QRLS(0.995)AETWDLLR ; 155.92 1.23E-08 189297000 165806 188781 149443 72020 199713 186380 198487 206497 154657 188278 TRUE FALSE FALSE 154183.8556 173821.306 207311.3318 167666.1997 174663.1333 163386.3306 148823.4532 159482.1409 168062.7933 141131.9633 1.092480059 1.231622532 1.468918358 1.188010113 1.237587356 1.157684813 1.054498568 1.130021415 1.190820204 1 17.10668524 -6.318241739 2.237571789 1.103995675 1.25718721 0.330163947 0.099637068 0.396085296 3.894035542 0.041095624 0.036463121 4.81E-07 6.318241739 0.153191535 TQS(ph)APLPQNAQALQHLVIQQQHQQFLEK ddPTM_HeLa_A485_30min_R1 2 TQSAPLPQNAQALQHLVIQQQHQQFLEK 28 0 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 T(0.113)QS(0.887)APLPQNAQALQHLVIQQQHQQFLEK;T(0.108)QS(0.892)APLPQNAQALQHLVIQQQHQQFLEK ; 396.33 3.94E-188 3767300000 1324000 1443930 1002540 2133870 2025820 1640230 2749000 2751600 1481170 2858900 TRUE FALSE FALSE 1618519.232 1612785.053 1373421.265 2250437.915 1824122.248 1726109.907 2161653.693 2076765.786 1778427.233 2146228.844 0.754122393 0.751450647 0.63992303 1.048554501 0.849919734 0.804252497 1.007186954 0.967634831 0.828628894 1 21.03337248 -5.253311842 24.99756981 0.922813595 0.718793883 0.58674646 0.082263318 454.2338555 1397067.902 0.022553657 0.038207734 5.58E-06 5.253311842 -0.204019711 TQS(ph)APLPQNAQALQHLVIQQQHQQFLEK ddPTM_HeLa_A486_30min_R1 1 TQSAPLPQNAQALQHLVIQQQHQQFLEK 28 0 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 T(0.119)QS(0.881)APLPQNAQALQHLVIQQQHQQFLEK 373.78 4.07E-167 1826400000 1268800 1133000 626750 486950 1077800 1241800 1461300 1500500 930240 1870300 TRUE FALSE FALSE 1179863.672 1043216.954 869444.3849 1133644.209 942612.2739 1088599.342 1095667.284 1158868.906 1010873.952 1401964.706 0.841578726 0.74411071 0.620161393 0.80861109 0.67235093 0.776481274 0.781522729 0.82660348 0.721040942 1 20.4190186 -12.03073651 0.301722277 1.537766619 0.736599422 0.555335652 0.065706549 52.60591614 1.439118973 17.97068064 0.066251929 9.32E-13 12.03073651 -0.801167198 TQS(ph)ASPPPKER ddPTM_HeLa_A485_30min_R1 1 TQSASPPPKER 11 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 TQS(0.731)AS(0.268)PPPKER 82.102 0.0028231 1641100000 390530 474780 370410 476790 565220 477160 686910 729490 385060 659460 TRUE FALSE FALSE 477402.0512 530301.391 507440.073 502835.8304 508944.7122 502143.3598 540146.067 550581.4337 462338.01 495068.7585 0.964314639 1.07116715 1.024989084 1.015688875 1.028028336 1.014290139 1.091052622 1.112131243 0.933886459 1 18.91726938 TQS(ph)ASPPPKER ddPTM_HeLa_A486_30min_R1 2 TQSASPPPKER 11 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 T(0.012)QS(0.641)AS(0.347)PPPKER;TQS(0.58)AS(0.419)PPPKER ; 77.562 0.004239 1630510000 1842700 1628580 1122620 762490 1938570 1821210 2244200 2204040 1463340 2314570 TRUE FALSE FALSE 1713536.246 1499525.39 1557328.529 1775115.254 1695416.474 1596527.627 1682677.423 1702228.206 1590183.489 1734986.607 0.987636584 0.864286435 0.897602623 1.023129082 0.977192831 0.920195937 0.969850382 0.981118932 0.916539346 1 20.7264931 -5.226917707 24.82936284 0.967184918 0.911286324 0.249465721 0.041840813 769.8542871 553709.0554 0.011172194 0.019349914 5.93E-06 5.226917707 -0.055898594 TQS(ph)LPVTEK ddPTM_HeLa_A485_30min_R1 3 TQSLPVTEK 9 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 TQS(1)LPVTEK;TQS(1)LPVTEK;TQS(0.999)LPVTEK ;; 134.98 0.00019243 547290000 865620 902940 791480 1560000 1568520 1151870 2019510 1820300 1322580 2557090 TRUE FALSE FALSE 1058174.183 1008530.978 1084281.388 1645218.85 1412352.641 1212180.132 1588025.191 1373868.571 1588009.675 1919654.523 0.551231573 0.525371084 0.564831523 0.85703903 0.735732719 0.631457441 0.827245305 0.715685325 0.827237222 1 20.87241526 -4.264047145 0.112606651 1.141453142 6.44E-17 0.685394627 0.082929149 28.65767735 0.529434162 1.135193109 5.344997275 5.44E-05 4.264047145 -1.141453142 TQS(ph)LPVTEK ddPTM_HeLa_A486_30min_R1 2 TQSLPVTEK 9 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 TQS(1)LPVTEK;TQS(1)LPVTEK ; 169.65 6.75E-06 389830000 1169990 1119150 609750 542270 1158410 1549720 1950640 2097770 1113900 2123970 TRUE FALSE FALSE 1087979.743 1030464.478 845861.5297 1262431.965 1013111.416 1358531.303 1462569.24 1620153.565 1210453.749 1592114.087 0.68335539 0.6472303 0.531281983 0.792928079 0.636330916 0.853287659 0.91863344 1.017611475 0.760280785 1 20.60251229 -6.384373268 2.634250791 0.925570562 0.655111449 0.673664505 0.088371079 0.169043987 2.283947535 0.033844047 0.028992532 4.13E-07 6.384373268 -0.270459113 TQS(ph)LSALPK ddPTM_HeLa_A485_30min_R1 3 TQSLSALPK 9 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 T(0.013)QS(0.977)LS(0.01)ALPK;TQS(0.996)LS(0.004)ALPK;TQS(0.962)LS(0.038)ALPK ;; 135.08 0.00019127 1736913000 2160070 1897420 1323510 2786880 2266700 1908700 3123370 2675570 1464210 3229360 TRUE FALSE FALSE 2640570.119 2119306.764 1813131.425 2939120.198 2041019.389 2008636.581 2456036.484 2019382.262 1758063.516 2424339.984 1.089191341 0.87417886 0.747886615 1.212338293 0.841886618 0.828529247 1.01307428 0.832961662 0.725172017 1 21.2091606 TQS(ph)LSALPK ddPTM_HeLa_A486_30min_R1 4 TQSLSALPK 9 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 T(0.001)QS(0.996)LS(0.003)ALPK;TQS(0.958)LS(0.042)ALPK;TQS(0.961)LS(0.039)ALPK;TQS(0.971)LS(0.028)ALPK ;;; 138 0.00015976 2285758000 3203090 2910650 1450956 1240128 2739240 3180560 3900260 3690650 2357690 4196460 TRUE FALSE FALSE 2978569.932 2679999.494 2012805.021 2887080.657 2395658.977 2788174.845 2924373.695 2850369.561 2562056.468 3145639.102 0.94688864 0.851972972 0.639871567 0.917804161 0.761581001 0.886361962 0.929659634 0.906133688 0.814478834 1 21.58492173 -6.45494042 8.088853568 0.905232826 0.820365136 0.181304321 0.08963927 0.605464582 66.47525173 0.031535424 0.027698119 3.51E-07 6.45494042 -0.08486769 TQS(ph)PEFEAQSSK ddPTM_HeLa_A485_30min_R1 2 TQSPEFEAQSSK 12 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 TQS(1)PEFEAQSSK;T(0.018)QS(0.982)PEFEAQSSK ; 202.32 4.27E-17 968690000 757380 648630 503390 1054820 863090 665140 984850 851710 747820 1531850 TRUE FALSE FALSE 925856.5681 724481.6362 689614.9088 1112442.146 777157.7291 699965.7019 774428.752 642826.7871 897900.6146 1149987.987 0.805101078 0.629990613 0.599671403 0.967351102 0.675796389 0.608672186 0.673423341 0.558985654 0.7807913 1 20.13318736 -10.90140649 3.020570331 1.153882874 0.694507055 0.376343631 0.115673827 119708657.3 97035204.22 131470903.4 0.028737539 1.25E-11 10.90140649 -0.459375818 TQS(ph)PEFEAQSSK ddPTM_HeLa_A486_30min_R1 3 TQSPEFEAQSSK 12 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK;TQS(1)PEFEAQSSK ;; 276.75 1.01E-40 966340000 1398690 1323500 696410 472179 1104230 1339320 1606590 1466510 1110720 1801650 TRUE FALSE FALSE 1300649.054 1218621.04 966078.6025 1099256.575 965727.1769 1174088.316 1204604.189 1132617.687 1206998.104 1350505.113 0.963083398 0.902344632 0.715346127 0.81395958 0.715085909 0.869369767 0.891965663 0.838662272 0.89373827 1 20.36506767 -8.275488495 0.783708449 1.000441776 0.827042089 0.310433092 0.073698188 1.353176456 1.659255218 0.078351187 0.027875071 5.30E-09 8.275488495 -0.173399687 TQS(ph)PGGCSAEAVLAR ddPTM_HeLa_A485_30min_R1 3 TQSPGGCSAEAVLAR 15 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2 K7ESM2 HEXIM2 Protein HEXIM2 1 0 TQS(1)PGGCSAEAVLAR;T(0.082)QS(0.918)PGGCSAEAVLAR;TQS(1)PGGCSAEAVLAR ;; 268.82 4.32E-51 2735090000 571560 743730 739310 777090 964270 669710 956250 923850 657900 889560 TRUE FALSE FALSE 698701.5501 830702.7539 1012811.534 819540.459 868263.893 704774.98 751939.3757 697274.339 789934.4954 667809.0631 1.046259461 1.243922552 1.516618432 1.227207752 1.300167879 1.055354021 1.125979591 1.044122306 1.182874775 1 19.34907615 -6.259806584 24.95529644 1.08719337 1.277237614 0.384818429 0.116586283 157.6410988 2409367.946 0.040521991 0.038503399 5.50E-07 6.259806584 0.190044244 TQS(ph)PGGCSAEAVLAR ddPTM_HeLa_A486_30min_R1 4 TQSPGGCSAEAVLAR 15 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2 K7ESM2 HEXIM2 Protein HEXIM2 1 0 TQS(1)PGGCSAEAVLAR;T(0.001)QS(0.999)PGGCSAEAVLAR;T(0.018)QS(0.982)PGGCSAEAVLAR;TQS(1)PGGCSAEAVLAR ;;; 271.73 4.07E-58 3493300000 829330 858060 614241 265495 956850 875950 1011920 936040 701950 941840 TRUE FALSE FALSE 771198.2497 790064.2006 852091.5651 618085.7774 836832.9507 767884.195 758726.913 722924.1256 762795.5912 705997.1337 1.09235323 1.119075649 1.206933463 0.87547916 1.185320607 1.087659083 1.074688376 1.023976007 1.0804514 1 19.4293028 -6.993318348 0.012738758 6.45E-08 2.134089629 0.108403988 0.084480154 1784.994199 17.35784725 1433.676885 1470.687184 1.02E-07 6.993318348 2.134089565 TQS(ph)PGTDLLPYLDWDYVR ddPTM_HeLa_A486_30min_R1 3 TQSPGTDLLPYLDWDYVR 18 0 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 0 T(0.029)QS(0.97)PGTDLLPYLDWDYVR;T(0.148)QS(0.852)PGTDLLPYLDWDYVR;T(0.172)QS(0.808)PGT(0.019)DLLPYLDWDYVR ;; 192.85 1.26E-19 38036000 37218.1 39146 28662.7 15971.4 46386 38318.9 43083.8 44095.6 35544.9 39488.2 TRUE FALSE FALSE 34609.30338 36043.92839 39761.66505 37182.22635 40567.83535 33591.50372 32303.77755 34055.99448 38625.96055 29600.09769 1.169229363 1.217696265 1.343295062 1.25615215 1.370530455 1.134844353 1.091340234 1.150536557 1.304926793 1 14.85331432 -6.292854825 24.34680153 1.142926253 1.271547417 0.367779825 0.088322001 585.9989901 454143.9563 0.03118075 0.02750222 5.10E-07 6.292854825 0.128621164 TQS(ph)SLTVSEVLTR ddPTM_HeLa_A485_30min_R1 2 TQSSLTVSEVLTR 13 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 TQS(0.995)S(0.005)LTVSEVLTR;TQS(0.913)S(0.084)LT(0.003)VSEVLTR ; 257.83 2.85E-41 1040130000 570120 464510 448060 700190 690720 406240 679710 476580 484950 899300 TRUE FALSE FALSE 696941.2271 518830.4038 613816.0393 738439.6067 621949.4915 427510.0982 534484.4058 359698.0078 582275.0168 675121.0604 1.032320376 0.768499806 0.909194033 1.093788433 0.921241431 0.633234724 0.791686761 0.532790382 0.862474971 1 19.3647867 -6.163637222 7.026659228 0.736998719 0.9431397 0.278953454 0.14243263 0.30739711 19.14015913 0.045620894 0.045657306 6.86E-07 6.163637222 0.206140981 TQS(ph)SLTVSEVLTR ddPTM_HeLa_A486_30min_R1 2 TQSSLTVSEVLTR 13 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 TQS(0.88)S(0.12)LTVSEVLTR;TQS(0.904)S(0.095)LTVSEVLTR ; 231.37 4.55E-28 1121620000 625710 772800 562820 334920 786450 884160 898110 865950 662530 824340 TRUE FALSE FALSE 581850.9602 711560.5135 780758.9768 779710.6859 687806.1076 775081.3287 673393.3788 668792.0886 719958.6338 617919.8984 0.941628456 1.151541673 1.263527811 1.261831328 1.11309914 1.254339487 1.089774549 1.082328131 1.165132626 1 19.23706031 TQS(ph)SLTVSEVLTRR ddPTM_HeLa_A485_30min_R1 2 TQSSLTVSEVLTRR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 T(0.205)QS(0.397)S(0.397)LT(0.001)VSEVLTRR;T(0.035)QS(0.757)S(0.209)LTVSEVLTRR ; 180.76 1.49E-17 393040000 91457 126224 91509 67424 146588 113941 172535 180159 84651 99197 TRUE FALSE FALSE 111801.2941 140984.7988 125361.9871 71107.20239 131993.184 119906.7746 135671.4878 135974.7228 101639.6792 74469.01349 1.501312947 1.893200839 1.683411412 0.954856242 1.772457803 1.610156614 1.821851552 1.825923514 1.364858677 1 16.18435263 -8.023058809 5.901055228 1.000156319 1.629820686 0.378923905 0.253115372 0.177080734 27.87823043 0.251690385 0.065346135 9.48E-09 8.023058809 0.629664367 TQS(ph)SLTVSEVLTRR ddPTM_HeLa_A486_30min_R1 1 TQSSLTVSEVLTRR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 T(0.162)QS(0.401)S(0.401)LT(0.036)VSEVLTRR 114.21 0.00011714 87780000 22581 19266 13242 12587 21696 21168 27812 24150 15506 24510 TRUE FALSE FALSE 20998.18851 17739.29199 18369.65703 29303.17211 18974.68537 18556.50738 20853.14343 18651.57219 16850.07256 18372.53647 1.142911788 0.965533095 0.999843275 1.594944289 1.032774403 1.010013365 1.13501712 1.015187654 0.917133712 1 14.16526319 -7.154009036 1.168023215 0.959065946 1.138970436 0.14011486 0.169955832 1.109490129 2.723840906 0.148381603 0.061533193 7.01E-08 7.154009036 0.17990449 TQS(ph)SPLPQSPQALQQLVMQQQHQQFLEK ddPTM_HeLa_A486_30min_R1 1 TQSSPLPQSPQALQQLVMQQQHQQFLEK 28 0 Q9UQL6-2;Q9UQL6;Q9UQL6-3 Q9UQL6-2 HDAC5 Histone deacetylase 5 1 0 T(0.02)QS(0.96)S(0.02)PLPQSPQALQQLVMQQQHQQFLEK 184.15 1.84E-20 111440000 45433 44664 27874 17695 47878 42956 49274 52459 41225 69494 TRUE FALSE FALSE 42248.38132 41124.66198 38667.55929 41194.85426 41872.6948 37656.52546 36945.12403 40515.23087 44798.41619 52092.25007 0.811030072 0.789458354 0.742290057 0.790805815 0.803818125 0.722881531 0.709224961 0.777759279 0.859982361 1 15.66878113 -8.053263387 2.406248648 0.999336121 0.766239333 0.832405055 0.032218511 0.137090213 1.832405825 0.033695361 0.009196743 8.85E-09 8.053263387 -0.233096788 TQSAS(ph)PPPK ddPTM_HeLa_A486_30min_R1 3 TQSASPPPK 9 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 TQS(0.007)AS(0.993)PPPK;TQS(0.012)AS(0.988)PPPK;TQS(0.017)AS(0.982)PPPK ;; 97.911 0.0022726 284380000 828730 754110 456469 281453 649760 742870 780380 727520 668760 921970 TRUE FALSE FALSE 770640.3066 694351.5772 633226.0215 655236.8078 568261.042 651222.2523 585120.67 561879.5776 726728.6553 691102.711 1.115087952 1.004700989 0.916254576 0.948103368 0.822252659 0.942294455 0.846647916 0.813018917 1.051549421 1 19.39854061 -4.351708098 1.467207279 0.903569573 1.17864083 0.413657679 0.072588764 0.864875325 1.965493809 0.020039428 0.331059893 4.45E-05 4.351708098 0.275071257 TQSAS(ph)PPPKER ddPTM_HeLa_A485_30min_R1 4 TQSASPPPKER 11 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 TQS(0.202)AS(0.798)PPPKER;TQS(0.207)AS(0.793)PPPKER;TQS(0.492)AS(0.508)PPPKER;TQS(0.001)AS(0.999)PPPKER ;;; 98.902 0.0014983 2097772000 956743 1032192 799920 1186103 1284948 1146654 1617761 1774638 910253 1683590 TRUE FALSE FALSE 1169567.18 1152897.876 1095843.695 1250896.804 1157014.065 1206691.03 1272113.146 1339405.248 1092932.428 1263901.997 0.925362237 0.912173474 0.867032173 0.989710283 0.915430206 0.95473465 1.006496666 1.059738216 0.864728777 1 20.26945317 -5.934945795 1.048124994 0.984622882 0.908085672 0.215048389 0.053686968 0.752815703 1.774282419 0.02543658 0.032054509 1.16E-06 5.934945795 -0.07653721 TQSAS(ph)PPPKER ddPTM_HeLa_A486_30min_R1 3 TQSASPPPKER 11 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 TQS(0.168)AS(0.832)PPPKER;TQS(0.002)AS(0.998)PPPKER;T(0.001)QS(0.479)AS(0.521)PPPKER ;; 135.86 1.07E-05 2498390000 2512760 2220340 1222210 1035100 2302710 2250390 2740640 2691090 1690200 2937820 TRUE FALSE FALSE 2336628.5 2044392.172 1695482.444 2409765.111 2013882.64 1972759.762 2054902.884 2078387.553 1836707.897 2202170.75 1.061056914 0.928353159 0.76991416 1.094268058 0.91449886 0.895825068 0.933126046 0.943790373 0.834044271 1 21.0704949 TQSEESRPQSLQQPATSTTETPAS(ph)PAHTTPQTQSTSGR ddPTM_HeLa_A485_30min_R1 2 TQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGR 38 1 B8ZZU6;E9PBF9;P15336-4;P15336-5;P15336;F5H629;P15336-2 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 TQSEESRPQSLQQPATSTTETPAS(1)PAHTTPQTQSTSGR;TQSEESRPQSLQQPATSTTETPAS(1)PAHTTPQTQSTSGR ; 268.76 7.82E-66 1982620000 187505 274880 275060 152965 370950 219540 284170 294340 239370 271710 TRUE FALSE FALSE 229214.8404 307024.8249 376816.1402 161321.0906 334016.9155 231034.7749 223454.758 222152.6535 287409.3634 203977.6975 1.123725011 1.505188208 1.847339905 0.790876123 1.637516845 1.132647235 1.095486226 1.089102663 1.409023471 1 17.63805189 -5.97517043 0.992578782 1.149960766 1.424704066 0.109056566 0.290692137 1.199601025 2.552652349 0.145557209 0.178133647 1.06E-06 5.97517043 0.2747433 TQSEESRPQSLQQPATSTTETPAS(ph)PAHTTPQTQSTSGR ddPTM_HeLa_A486_30min_R1 2 TQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGR 38 1 B8ZZU6;E9PBF9;P15336-4;P15336-5;P15336;F5H629;P15336-2 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 TQSEESRPQSLQQPATSTTETPAS(1)PAHTTPQTQSTSGR;TQSEESRPQSLQQPATSTTETPAS(0.998)PAHTTPQTQSTSGR ; 326.49 1.42E-129 2334900000 249033 241255 219856 8806.54 263875 207866 236500 242528 262924 122385 TRUE FALSE FALSE 231577.0727 222137.0752 304990.1311 20502.07018 230777.337 182221.6063 177325.1986 187309.6687 285714.464 91738.99941 2.52430345 2.421402856 3.324541723 0.223482601 2.515585939 1.986304707 1.932931465 2.041767078 3.114427516 1 16.48524755 TQSPHS(ph)PKEESER ddPTM_HeLa_A485_30min_R1 1 TQSPHSPKEESER 13 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3;A0A1B0GTZ9 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 TQSPHS(1)PKEESER 135.08 7.20E-06 205100000 120170 126350 131820 218720 255170 167310 279710 288010 147940 363480 TRUE FALSE FALSE 146901.4019 141125.5334 180585.7035 230668.1198 229764.3788 176070.0929 219947.6735 217375.0959 177630.201 272871.1254 0.538354513 0.517187494 0.661798507 0.845337225 0.842025255 0.645249997 0.806049644 0.796621833 0.650967378 1 18.05786021 -4.971367214 3.419075766 0.784800431 0.529213976 0.559053368 0.09601504 0.170169277 4.176073651 0.025272406 0.055888428 1.07E-05 4.971367214 -0.255586455 TQSPHS(ph)PKEESER ddPTM_HeLa_A486_30min_R1 4 TQSPHSPKEESER 13 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3;A0A1B0GTZ9 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 T(0.061)QS(0.209)PHS(0.729)PKEES(0.002)ER;TQS(0.015)PHS(0.983)PKEES(0.002)ER;TQS(0.001)PHS(0.785)PKEES(0.214)ER;TQSPHS(0.999)PKEESER ;;; 140.75 6.74E-07 683780000 454334 491982 366957 144704 614476 568938 730640 711720 464744 668960 TRUE FALSE FALSE 422487.5328 452995.5546 509052.5778 336878.2249 537402.6903 498748.2141 547826.1441 549676.8927 505028.3841 501448.0618 0.84253498 0.903374824 1.015165112 0.671810803 1.0717016 0.994615898 1.092488307 1.096179115 1.007139966 1 18.93574075 -5.85633702 24.22491025 1.048487173 0.872436269 0.523803508 0.086132649 10.10843287 2572.682362 0.02596402 0.029440445 1.39E-06 5.85633702 -0.176050904 TQSRPGGPPNPPGPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 TQSRPGGPPNPPGPSPK 17 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 TQSRPGGPPNPPGPS(1)PK 110.44 7.67E-05 297240000 165910 129500 87441 289420 212930 150210 267910 250120 118850 408500 TRUE FALSE FALSE 202816.1071 144643.8985 119789.0646 305230.2817 191729.9416 158074.7633 210668.8399 188777.6778 142702.1048 306668.4679 0.661352987 0.471662116 0.390614221 0.99531029 0.625202659 0.515458157 0.686959573 0.615575769 0.465330217 1 18.22632031 -10.84409423 2.808718736 1.143897812 0.605387669 0.358167768 0.159384988 31200586.34 24980139.35 30319775.18 0.040905539 1.43E-11 10.84409423 -0.538510143 TQSRPGGPPNPPGPS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TQSRPGGPPNPPGPSPK 17 1 M0QXA7;A0A669KBH9;A0A669KAV7;O95785-3;B9EGQ5;A0A669KBG4;A0A2R8YFV2;O95785-4;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 0 TQSRPGGPPNPPGPS(1)PK;TQSRPGGPPNPPGPS(1)PK ; 113.36 6.12E-05 678550000 371320 316760 148606 271400 285980 380280 573780 488780 251860 738780 TRUE FALSE FALSE 345292.3855 291658.784 206150.223 631832.9158 250109.7217 333364.92 430214.1752 377495.464 273691.4276 553784.6793 0.623513792 0.526664595 0.372256999 1.14093607 0.451637127 0.6019757 0.776861822 0.681664694 0.494219934 1 19.07896562 -11.26542879 2.245944492 2.443823036 0.634152625 0.229309108 0.203380775 6325079.633 1018263.842 46376295.72 0.051959144 5.43E-12 11.26542879 -1.809670412 TQSSS(ph)CEDLPSTTQPK ddPTM_HeLa_A485_30min_R1 2 TQSSSCEDLPSTTQPK 16 0 Q5JS72;A0A2U3TZM4;A0A2R8Y6F8;A0A2R8YFN5;O14936-5;O14936-3;O14936-4 Q5JS72 CASK Peripheral plasma membrane protein CASK 1 0 TQSS(0.004)S(0.996)CEDLPSTTQPK;TQSS(0.002)S(0.998)CEDLPSTTQPK ; 369.44 1.03E-118 1200410000 1285720 1024460 704670 1819110 1182570 1104030 1684790 1462310 1065180 3134800 TRUE FALSE FALSE 1571723.978 1144261.685 965356.7568 1918483.373 1064829.179 1161835.304 1324820.853 1103676.18 1278951.856 2353352.052 0.667866067 0.48622631 0.410204991 0.815213079 0.452473389 0.493693794 0.562950559 0.468980482 0.543459639 1 21.16628573 -10.41403037 2.931513975 1.008759983 0.540969043 0.594700805 0.112759401 18277470.03 21778049.77 1342829.148 0.027837866 3.85E-11 10.41403037 -0.46779094 TQSSS(ph)CEDLPSTTQPK ddPTM_HeLa_A486_30min_R1 2 TQSSSCEDLPSTTQPK 16 0 Q5JS72;A0A2U3TZM4;A0A2R8Y6F8;A0A2R8YFN5;O14936-5;O14936-3;O14936-4 Q5JS72 CASK Peripheral plasma membrane protein CASK 1 0 TQSS(0.002)S(0.998)CEDLPSTTQPK;TQSS(0.005)S(0.995)CEDLPSTTQPK ; 352.84 1.89E-104 726790000 1045810 1151820 718990 466680 1361220 1455580 1522230 1372700 1166700 1795070 TRUE FALSE FALSE 972504.1196 1060545.588 997402.1832 1086454.625 1190483.095 1276005.339 1141351.953 1060166.176 1267830.495 1345572.788 0.722743599 0.788174076 0.74124729 0.8074291 0.884740763 0.948299007 0.848227583 0.787892105 0.942223644 1 20.359789 -1 0.115339216 1.040151008 0.064763802 0.654625589 0.052336099 72.14783652 0.577426532 0.45472085 11.25386062 0.1 1 -0.975387206 TQSSSCERDS(ph)PSTSR ddPTM_HeLa_A485_30min_R1 1 TQSSSCERDSPSTSR 15 1 Q5JS79;A0A2U3TZM1;A0A2R8YE77;A0A2R8YEK3;O14936-6;O14936-2;O14936 Q5JS79 CASK Peripheral plasma membrane protein CASK 1 0 TQSSSCERDS(0.902)PS(0.086)T(0.012)SR 183.21 4.04E-18 1586700000 407110 397560 353100 414000 427920 406380 569200 493050 413270 825420 TRUE FALSE FALSE 497670.215 444051.1837 483726.3837 436615.7717 385314.7823 427657.4284 447585.7701 372128.7144 496209.4983 619657.9847 0.803136936 0.716606894 0.780634472 0.704607675 0.621818474 0.690150759 0.722310986 0.600538884 0.800779641 1 19.24111263 -8.013887363 22.87061133 1.000000004 0.70490194 0.705196456 0.058170272 131.9887246 217368.5588 0.057467041 0.014839104 9.69E-09 8.013887363 -0.295098063 TQSSSCERDS(ph)PSTSR ddPTM_HeLa_A486_30min_R1 2 TQSSSCERDSPSTSR 15 1 Q5JS79;A0A2U3TZM1;A0A2R8YE77;A0A2R8YEK3;O14936-6;O14936-2;O14936 Q5JS79 CASK Peripheral plasma membrane protein CASK 1 0 TQSSSCERDS(0.872)PS(0.123)T(0.005)SR;TQSSSCERDS(0.997)PS(0.003)TSR ; 193.72 9.49E-19 1876980000 1229860 1219800 1021360 441580 1536840 1334580 1403900 1276190 1412460 1765620 TRUE FALSE FALSE 1143653.165 1123138.606 1416857.945 1028020.556 1344075.197 1169933.089 1052629.371 985629.396 1534893.17 1323497.26 0.864114494 0.848614228 1.070540898 0.776745512 1.015548152 0.883970919 0.79533929 0.744715857 1.159725235 1 20.33592378 -7.771249012 24.99949567 1.079862635 0.879650896 0.390029942 0.102367951 235.0571015 599013.4693 0.09322537 0.025260866 1.69E-08 7.771249012 -0.200211739 TQSSSCERDSPSTS(ph)R ddPTM_HeLa_A485_30min_R1 1 TQSSSCERDSPSTSR 15 1 Q5JS79;A0A2U3TZM1;A0A2R8YE77;A0A2R8YEK3;O14936-6;O14936-2;O14936 Q5JS79 CASK Peripheral plasma membrane protein CASK 1 0 TQS(0.003)S(0.053)S(0.017)CERDS(0.011)PS(0.087)T(0.087)S(0.742)R 213.98 3.58E-25 153010000 132520 143910 119790 150100 151160 123580 180790 165080 135190 267630 TRUE FALSE FALSE 161998.6168 160739.0226 164105.3059 158299.5829 136109.9796 130050.4577 142162.7396 124593.8712 162321.393 200914.7664 0.80630518 0.800035884 0.816790666 0.787894219 0.67745135 0.647291685 0.707577358 0.620132972 0.807911713 1 17.61622407 -5.62325231 6.148209133 0.718080655 0.806158569 0.044636617 0.102029764 0.409487276 21.38592774 0.028492235 0.036905125 2.38E-06 5.62325231 0.088077914 TQT(ph)PPLGQTPQLGLK ddPTM_HeLa_A485_30min_R1 5 TQTPPLGQTPQLGLK 15 0 H0Y3P2;D3DQV9;P78344-2;P78344;E9PKF8 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 T(0.043)QT(0.957)PPLGQTPQLGLK;T(0.008)QT(0.992)PPLGQTPQLGLK;T(0.051)QT(0.949)PPLGQTPQLGLK;T(0.128)QT(0.872)PPLGQTPQLGLK;T(0.127)QT(0.873)PPLGQTPQLGLK ;;;; 145.55 3.87E-07 8446470000 4661779 4008345 2762674 6633260 5737670 3955596 7077960 5906890 3903686 9255560 TRUE FALSE FALSE 5698775.656 4477086.08 3784702.077 6995618.197 5166407.429 4162704.89 5565696.024 4458215.966 4687119.973 6948319.228 0.820166067 0.644340873 0.544693177 1.006807253 0.743547793 0.599095228 0.801013287 0.641625092 0.674568888 1 22.72823261 -10.0590325 4.514123625 1.000014812 0.717902814 0.308383151 0.125981294 37867497.35 42190958.32 4819.783039 0.030494534 8.73E-11 10.0590325 -0.282111997 TQT(ph)PPLGQTPQLGLK ddPTM_HeLa_A486_30min_R1 6 TQTPPLGQTPQLGLK 15 0 H0Y3P2;D3DQV9;P78344-2;P78344;E9PKF8 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 T(0.002)QT(0.998)PPLGQTPQLGLK;T(0.129)QT(0.871)PPLGQTPQLGLK;T(0.172)QT(0.828)PPLGQTPQLGLK;T(0.142)QT(0.858)PPLGQTPQLGLK;T(0.008)QT(0.992)PPLGQTPQLGLK;T(0.105)QT(0.895)PPLGQTPQLGLK ;;;;; 182.17 4.34E-17 9173260000 4087639 3806771 2031063 1741744 3330815 4057767 5250750 4726590 2998482 5472290 TRUE FALSE FALSE 3801116.615 3505108.602 2817544.987 4054868.055 2913033.124 3557160.964 3936956.813 3650448.638 3258392.834 4101992.965 0.926651178 0.854489179 0.686872213 0.988511704 0.710150687 0.867178709 0.959766837 0.889920745 0.794343838 1 21.96789359 -6.522641764 24.99809653 0.90349719 0.83036137 0.122071586 0.097202362 19.89649813 2099298.257 0.035653129 0.027929239 3.00E-07 6.522641764 -0.07313582 TQT(ph)PPVS(ph)PAPQPTEER ddPTM_HeLa_A485_30min_R1 2 TQTPPVSPAPQPTEER 16 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 TQT(1)PPVS(1)PAPQPTEER;TQT(1)PPVS(1)PAPQPTEER ; 320.8 3.67E-78 2731200000 862790 611970 584010 1220010 861560 498840 834780 509450 697880 1465170 TRUE FALSE FALSE 1054714.659 683534.5681 800059.6017 1286656.057 775780.0613 524958.491 656422.4335 384506.5887 837938.1147 1099930.083 0.958892456 0.621434561 0.727373143 1.169761675 0.70529943 0.477265327 0.596785599 0.349573663 0.761810343 1 20.06898039 -5.995082266 24.99812286 0.593623799 0.853515899 0.198126336 0.211524808 193.8024831 985136.4582 0.064274852 0.072632817 1.01E-06 5.995082266 0.2598921 TQT(ph)PPVS(ph)PAPQPTEER ddPTM_HeLa_A486_30min_R1 3 TQTPPVSPAPQPTEER 16 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 TQT(1)PPVS(1)PAPQPTEER;TQT(1)PPVS(1)PAPQPTEER;T(0.176)QT(0.824)PPVS(1)PAPQPTEER ;; 300.5 2.52E-67 4302400000 991761 1223408 682797 418548 983844 1235414 1240008 1104508 1038886 1358278 TRUE FALSE FALSE 922243.6754 1126460.695 947194.2843 974400.8962 860441.1115 1083001.181 929744.8829 853035.6396 1128937.475 1018156.348 0.905797697 1.106373001 0.930303373 0.957024821 0.845097232 1.063688483 0.913165139 0.837823819 1.108805614 1 19.95752769 TQT(ph)PPVS(ph)PAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 2 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.003)QT(0.997)PPVS(0.812)PAPQPT(0.188)EERLPSSPVYEDAASFK;T(0.144)QT(0.857)PPVS(0.892)PAPQPT(0.105)EERLPS(0.001)S(0.001)PVYEDAASFK ; 212.41 1.53E-29 4071960000 174582 157016 120909 283474 234040 191420 280560 218804 154208 353720 TRUE FALSE FALSE 213417.1636 175377.6553 165638.2705 298959.4668 210738.1558 201442.4552 220616.064 165141.9759 185156.1311 265544.1137 0.803697588 0.660446405 0.623769317 1.125837295 0.793608839 0.7586026 0.830807586 0.621900345 0.697270704 1 18.01859202 -11.33555026 2.24535482 2.30673873 0.769493955 0.200214464 0.138829786 7266111.288 980250.3333 48187433.72 0.036584904 4.62E-12 11.33555026 -1.537244775 TQT(ph)PPVS(ph)PAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.003)QT(0.997)PPVS(0.998)PAPQPT(0.002)EERLPSSPVYEDAASFK 205.05 5.23E-29 4252900000 240910 242190 127620 126360 235470 270490 378020 354100 211470 406440 TRUE FALSE FALSE 224023.4531 222997.9824 177037.8818 294172.4659 205935.1569 237119.6939 283435.3977 273479.1599 229800.3899 304664.7785 0.735311296 0.731945397 0.581090741 0.965561124 0.675940153 0.778297035 0.930318887 0.897639567 0.754272913 1 18.2168632 -4.082945512 0.055098424 1.402699718 8.41E-07 0.365132598 0.103386848 221.2175768 1.818973633 14.86481793 34.40323762 8.26E-05 4.082945512 -1.402698877 TQT(ph)PPVSPAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.124)QT(0.876)PPVS(0.014)PAPQPT(0.986)EERLPSSPVYEDAASFK 135.84 1.09E-06 3470200000 258180 193820 152810 380370 341860 232170 405290 344000 215350 549200 TRUE FALSE FALSE 315611.2503 216485.563 209340.778 401148.65 307823.2181 244326.0622 318696.4806 259633.4606 258568.7697 412294.5473 0.765499453 0.525075009 0.507745687 0.972966178 0.746609966 0.59260076 0.772982526 0.629728097 0.627145742 1 18.65331586 -11.27146842 2.279078965 2.324181368 0.681434365 0.344580648 0.131459072 5287459.407 770370.7045 36166172.4 0.03523217 5.35E-12 11.27146842 -1.642747004 TQT(ph)PPVSPAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.099)QT(0.786)PPVS(0.143)PAPQPT(0.959)EERLPS(0.011)S(0.001)PVYEDAASFK 219.81 1.46E-38 284900000 82090 84714 37729 36109 82639 91487 125620 99465 69037 129180 TRUE FALSE FALSE 76335.91491 78000.95412 52338.67922 84063.57685 72273.64604 80200.26411 94188.54733 76818.99081 75021.18275 96832.48718 0.78832959 0.805524637 0.540507434 0.868134025 0.746378082 0.828237159 0.972695735 0.793318369 0.774752203 1 16.56320353 -6.103889196 1.546673914 0.869480017 0.734611968 0.267752372 0.103018387 0.582888745 2.808592635 0.042989113 0.044069513 7.87E-07 6.103889196 -0.134868049 TQT(ph)PPVSPAPQPTEER ddPTM_HeLa_A485_30min_R1 4 TQTPPVSPAPQPTEER 16 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 TQT(1)PPVSPAPQPTEER;T(0.001)QT(0.999)PPVSPAPQPTEER;T(0.001)QT(0.999)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER ;;; 220.43 4.45E-33 3998030000 607333 774843 765011 595243 782379 774628 708356 784818 773507 902300 TRUE FALSE FALSE 742432.1306 865454.1486 1048020.404 627759.6179 704482.5997 815186.3243 557009.9539 592340.155 928742.7599 677373.2156 1.096045892 1.277662194 1.547183118 0.926755891 1.04002134 1.203452256 0.822308797 0.874466456 1.371094603 1 19.36959142 -5.28124496 24.9979009 1.027272782 1.30403362 0.32200203 0.181300503 922.2512141 1164030.504 0.051348794 0.076276691 5.23E-06 5.28124496 0.276760838 TQT(ph)PPVSPAPQPTEER ddPTM_HeLa_A486_30min_R1 5 TQTPPVSPAPQPTEER 16 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 T(0.027)QT(0.973)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER;TQT(1)PPVSPAPQPTEER;T(0.001)QT(0.999)PPVSPAPQPTEER ;;;; 298.15 6.18E-67 6864430000 972333 1177823 763123 277260 1001066 1116410 1054970 1067848 989200 915590 TRUE FALSE FALSE 904177.4778 1084488.016 1058624.663 645475.2919 875502.9677 978678.685 791005.3477 824722.3214 1074944.652 686320.3045 1.317427842 1.580148524 1.542464438 0.940486953 1.275647773 1.425979501 1.152530885 1.201658054 1.566243408 1 19.38852251 -14 0.051518303 1.08E-06 1.837534376 0.169795995 0.198705528 1015.040786 3.851954823 145.5427296 31.06020754 1.00E-14 14 1.837533297 TQT(ph)PPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.025)QT(0.973)PPVS(0.007)PAPQPT(0.272)EERLPS(0.037)S(0.685)PVYEDAASFK 160.77 3.74E-14 3523700000 554750 646570 315410 273750 512980 789500 819370 860410 485560 877780 TRUE FALSE FALSE 515864.8897 595333.4384 437545.199 637303.8346 448637.2651 692099.517 614354.9596 664513.4256 527648.7318 657978.1746 0.784015199 0.904792076 0.664984366 0.968578988 0.681842168 1.051857864 0.933701122 1.009932322 0.801924368 1 19.3276802 -6.269262527 24.95481483 0.958492525 0.808388544 0.362073021 0.105043636 667.4859693 2129186.253 0.034196114 0.030695957 5.38E-07 6.269262527 -0.150103981 TQT(ph)PPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 T(0.042)QT(0.917)PPVS(0.005)PAPQPT(0.037)EERLPSSPVYEDAASFK 145.09 2.69E-09 2386000000 127070 81857 58115 170560 160890 107510 192030 176430 105250 239810 TRUE FALSE FALSE 155336.2831 91429.46409 79614.15687 179877.2609 144871.2267 113139.0574 151001.2218 133160.2659 126372.7096 180029.7804 0.862836597 0.507857444 0.442227706 0.99915281 0.804707012 0.628446344 0.838756907 0.739656881 0.701954473 1 17.45787605 -14 0.145548893 1.952563496 0.631724478 0.212438069 0.158419033 221.2812943 1.937605125 61.31185688 0.910565765 1.00E-14 14 -1.320839018 TQT(ph)PPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 T(0.01)QT(0.971)PPVS(0.019)PAPQPTEERLPSSPVYEDAASFK 161.7 4.84E-14 4345800000 684420 684730 269380 394480 772210 885050 1066900 1021400 636100 1172300 TRUE FALSE FALSE 636445.6923 630469.5011 373691.1502 918369.3759 675352.2212 775861.5295 799950.3355 788849.517 691237.6602 878748.4496 0.724263801 0.717463002 0.425253837 1.045087905 0.768538734 0.882916527 0.910329157 0.897696625 0.786616079 1 19.74509071 -5.268337952 24.99948655 0.888876502 0.631840491 0.569000677 0.109915296 395.1213812 1431865.703 0.029873492 0.045420668 5.39E-06 5.268337952 -0.257036011 TQTCTSSSLS(ph)PTK ddPTM_HeLa_A485_30min_R1 1 TQTCTSSSLSPTK 13 0 A0A2R8YCF6;A0A2R8YD00;R4GN03;A0A2R8Y500;A0A2U3TZI0;Q9BZR9 A0A2R8YCF6 TRIM8 Probable E3 ubiquitin-protein ligase TRIM8 1 0 TQTCTSSSLS(1)PTK 222.45 6.55E-31 0 51647 48237 37776 77019 68536 54628 86069 85810 45981 115930 TRUE FALSE FALSE 63135.69697 53877.89754 51750.91439 81226.35295 61712.3152 57488.23761 67679.65503 64764.96296 55208.96494 87030.78453 0.725440973 0.619067125 0.59462769 0.933305995 0.70908605 0.660550608 0.777651901 0.744161544 0.634361338 1 16.40923818 -10.75203462 2.601106982 1.06502553 0.712741486 0.467552962 0.092529465 19790121.11 15056429.82 8269160.673 0.024024891 1.77E-11 10.75203462 -0.352284043 TQTGDSS(ph)SISSFSYR ddPTM_HeLa_A486_30min_R1 3 TQTGDSSSISSFSYR 15 0 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328;Q4V328-3;Q4V328-2 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 TQTGDS(0.001)S(0.498)S(0.498)IS(0.004)SFSYR;TQTGDS(0.003)S(0.731)S(0.261)IS(0.006)SFSYR;TQTGDS(0.104)S(0.601)S(0.274)IS(0.019)S(0.003)FSYR ;; 268.08 5.80E-51 907350000 1298630 1383630 1058430 485610 1475100 1247150 1530270 1529440 1159270 1530410 TRUE FALSE FALSE 1207602.743 1273986.12 1468282.442 1130524.621 1290079.203 1093289.313 1147380.26 1181219.899 1259756.457 1147185.375 1.052665742 1.110532045 1.279899896 0.985476843 1.124560365 0.953018873 1.000169882 1.029667851 1.098128066 1 20.12966711 -5.300060191 24.99985235 1.028353437 1.143982714 0.37267282 0.071532631 575.8906838 372781.6715 0.020166201 0.029911842 5.01E-06 5.300060191 0.115629278 TQTGDSSS(ph)ISSFSYR ddPTM_HeLa_A485_30min_R1 2 TQTGDSSSISSFSYR 15 0 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328;Q4V328-3;Q4V328-2 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 TQTGDSS(0.198)S(0.782)IS(0.019)SFSYR;TQTGDS(0.001)S(0.459)S(0.539)IS(0.001)SFSYR ; 340.4 8.14E-91 786350000 827520 942260 856290 783120 1135290 820940 1177790 1201380 737110 1036160 TRUE FALSE FALSE 1011598.969 1052449.11 1173067.304 825899.8626 1022256.541 863923.149 926145.5448 906739.6713 885041.2158 777864.3811 1.300482441 1.352998204 1.508061473 1.061753029 1.314183508 1.110634668 1.190625985 1.165678354 1.137783446 1 19.56915912 -5.186487915 0.189911576 0.967770071 1.617064045 0.501199935 0.102749692 9.02501887 0.462193635 0.301658174 1.466324327 6.51E-06 5.186487915 0.649293973 TQTPPVS(ph)PAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_HeLa_A486_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 0 T(0.36)QT(0.361)PPVS(0.281)PAPQPT(0.557)EERLPS(0.215)S(0.215)PVY(0.011)EDAASFK 135.35 3.68E-05 128290000 85040 87277 62270 47747 95730 93928 130050 130150 83918 134590 TRUE FALSE FALSE 79079.13515 80360.85266 86382.61165 111157.429 83722.65075 82340.11835 97510.11447 100517.6862 91192.07981 100887.788 0.78383258 0.796536967 0.856224657 1.101792707 0.829859118 0.816155454 0.966520492 0.99633155 0.903896117 1 16.62239203 -5.007301747 22.09446968 0.938867312 0.799233505 0.386201998 0.079219415 81.28255477 245969.3969 0.021768688 0.042370786 9.83E-06 5.007301747 -0.139633807 TQTPPVSPAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_HeLa_A485_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 TQT(0.001)PPVS(0.103)PAPQPT(0.32)EERLPS(0.262)S(0.262)PVY(0.05)EDAASFK 66.828 0.0051396 1362600000 37563 34716 22004 47687 53118 36529 62278 55085 31913 64466 TRUE FALSE FALSE 45918.75976 38775.73421 30144.19526 50292.02006 47829.38541 38441.60196 48971.79654 41575.31738 38317.64638 48395.81261 0.948816794 0.801220852 0.62286784 1.03918123 0.988295946 0.794316696 1.011901524 0.859068484 0.791755408 1 15.5625946 -5.275975975 24.99504593 0.921130846 0.791993709 0.237652108 0.110842446 1202.53888 2067710.908 0.031716499 0.047279441 5.30E-06 5.275975975 -0.129137137 TQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A485_30min_R1 4 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 TQTPPVSPAPQPTEERLPS(0.879)S(0.121)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.499)S(0.499)PVY(0.003)EDAASFK;TQTPPVSPAPQPTEERLPS(0.717)S(0.283)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.5)S(0.5)PVYEDAASFK ;;; 326.02 9.78E-111 15269000000 2271804 2208964 1839964 2757516 3241048 2400991 3761723 3553260 1999873 3874481 TRUE FALSE FALSE 2777158.962 2467283.124 2520643.251 2908152.117 2918357.881 2526703.176 2958000.151 2681817.414 2401229.167 2908644.191 0.954795011 0.848258832 0.866604193 0.999830823 1.003339594 0.868687612 1.016968717 0.92201632 0.825549297 1 21.47191539 -5.239403661 24.8543942 0.94667456 0.88572329 0.144381915 0.064593141 1455.983124 1642220.788 0.017556893 0.030376854 5.76E-06 5.239403661 -0.06095127 TQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_A486_30min_R1 3 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 TQTPPVSPAPQPT(0.001)EERLPS(0.924)S(0.075)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.5)S(0.5)PVYEDAASFK;TQTPPVSPAPQPT(0.001)EERLPS(0.5)S(0.5)PVYEDAASFK ;; 302.89 4.93E-93 7399640000 2156821 2086010 1303712 959414 2190566 2236350 2862910 2834420 1693872 2896580 TRUE FALSE FALSE 2005638.986 1920706.97 1808544.201 2233564.278 1915804.786 1960451.875 2146579.637 2189084.441 1840698.189 2171257.514 0.9237223 0.884605791 0.832947814 1.028696165 0.882348028 0.902910807 0.988634293 1.008210416 0.847756738 1 21.05009941 -1.000000024 0.067194551 1.070661083 0.610626367 0.129556 0.06292121 535.828268 2.673765134 3.333908137 23.50668652 0.099999995 1.000000024 -0.460034716 TQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_HeLa_A485_30min_R1 2 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 TQTPPVSPAPQPTEERLPS(0.259)S(0.741)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.217)S(0.751)PVY(0.032)EDAASFK ; 129.13 1.48E-06 496680000 145442 123064 108723 180581 170647 127694 221019 217533 121079 244748 TRUE FALSE FALSE 177795.0711 137455.2643 148944.162 190445.6828 153656.7855 134379.8604 173796.4851 164182.6907 145378.4447 183736.8279 0.967661591 0.748109488 0.810638584 1.036513393 0.836287353 0.731371397 0.945899018 0.893575298 0.791231929 1 17.4872813 -10.99164682 2.922634255 1.131059181 0.86136055 0.162214705 0.093811173 100869516.4 104980503.5 88717078.31 0.024173651 1.02E-11 10.99164682 -0.269698632 TQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_HeLa_A486_30min_R1 3 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 0 TQTPPVSPAPQPTEERLPS(0.206)S(0.794)PVYEDAASFK;TQTPPVSPAPQPTEERLPS(0.155)S(0.809)PVY(0.036)EDAASFK;TQTPPVSPAPQPTEERLPS(0.287)S(0.713)PVYEDAASFK ;; 329.39 2.51E-127 2215850000 822190 700990 443012 351058 754390 880970 1057600 1013790 621678 1017290 TRUE FALSE FALSE 764558.7268 645440.9994 614558.1107 817280.7655 659767.3718 772284.8784 792977.2938 782972.1479 675565.5496 762553.9626 1.002629013 0.846420098 0.805920815 1.071767777 0.865207453 1.012760954 1.039896627 1.026776053 0.885924909 1 19.54047991 -5.257739066 24.99611147 0.9854851 0.881132992 0.265945066 0.076855062 427.7794486 2889697.379 0.020892598 0.034486371 5.52E-06 5.257739066 -0.104352107 TQTPQLHFLDT(ph)DDEVSPTSWGDSR ddPTM_HeLa_A485_30min_R1 3 TQTPQLHFLDTDDEVSPTSWGDSR 24 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 0 TQTPQLHFLDT(1)DDEVSPTSWGDSR;TQTPQLHFLDT(1)DDEVSPTSWGDSR;TQTPQLHFLDT(1)DDEVSPTSWGDSR ;; 205.58 1.43E-28 557937000 216191 254689 222869 198873 342898 253997 317412 320816 186696 271497 TRUE FALSE FALSE 264281.9421 284472.6631 305317.5175 209736.9284 308757.8711 267295.8902 249594.3332 242135.373 224164.1747 203817.7944 1.296657845 1.395720447 1.497992451 1.029041301 1.514872006 1.311445308 1.224595398 1.187999182 1.09982632 1 17.63692049 -7.519365154 0.874975176 1.002908653 1.349568378 0.459032383 0.126727021 0.511423138 0.756550382 0.115960834 0.045311223 3.02E-08 7.519365154 0.346659725 TQTPQLHFLDT(ph)DDEVSPTSWGDSR ddPTM_HeLa_A486_30min_R1 3 TQTPQLHFLDTDDEVSPTSWGDSR 24 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 0 TQTPQLHFLDT(1)DDEVSPTSWGDSR;TQTPQLHFLDT(1)DDEVSPTSWGDSR;TQTPQLHFLDT(1)DDEVSPTSWGDSR ;; 235.14 1.29E-48 549699000 455723 456775 351918 208251 459413 475992 586902 560962 411054 520940 TRUE FALSE FALSE 423779.1711 420578.4855 488190.0743 484818.8524 401789.1377 417268.9466 440052.912 433243.1983 446684.4917 390493.2332 1.085240754 1.077044234 1.250188307 1.241555067 1.028927273 1.068568956 1.126915589 1.10947684 1.143898162 1 18.57493802 -5.770746113 24.99942399 1.086916103 1.163522695 0.274351941 0.066193823 316.1435209 849210.7215 0.021987787 0.025258191 1.70E-06 5.770746113 0.076606592 TRDDGDEEGLLT(ph)HS(ph)EEELEHS(ph)QDTDADDGALQ ddPTM_HeLa_A485_30min_R1 3 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 0 TRDDGDEEGLLT(1)HS(1)EEELEHS(0.588)QDT(0.412)DADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHS(0.569)QDT(0.431)DADDGALQ;T(0.001)RDDGDEEGLLT(0.999)HS(1)EEELEHS(0.556)QDT(0.444)DADDGALQ ;; 160.61 2.29E-14 3436410000 425950 445540 440117 462060 618410 458803 627080 633990 392911 643220 TRUE FALSE FALSE 520701.108 497642.0273 602934.5931 487301.1678 556838.929 482825.2156 493099.2352 478502.9584 471764.6337 482877.0916 1.078330526 1.030577006 1.248629524 1.00916191 1.153169075 0.999892569 1.021169245 0.990941519 0.976986985 1 18.8812965 -6.281640402 23.4631415 0.998692578 1.102665137 0.416735911 0.062791352 377.2572299 438175.4893 0.021334978 0.018845228 5.23E-07 6.281640402 0.103972559 TRDDGDEEGLLT(ph)HS(ph)EEELEHS(ph)QDTDADDGALQ ddPTM_HeLa_A486_30min_R1 2 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 0 TRDDGDEEGLLT(0.998)HS(0.996)EEELEHS(0.567)QDT(0.438)DADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHS(0.579)QDT(0.421)DADDGALQ ; 118.58 2.24E-05 1827110000 242360 247760 182088 97345 284340 226840 260000 273520 226190 248650 TRUE FALSE FALSE 225371.8155 228126.5953 252597.3501 226624.0795 248675.4258 198854.7871 194945.25 211245.4669 245796.3313 186386.4216 1.209164346 1.223944284 1.355234721 1.21588299 1.334192822 1.066895246 1.045919807 1.133373693 1.318745911 1 17.50793724 -6.265326699 24.98693804 1.11713109 1.267239972 0.420479134 0.090739926 359.2777421 2309358.388 0.031686961 0.028980392 5.43E-07 6.265326699 0.150108882 TRDDGDEEGLLT(ph)HS(ph)EEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_A485_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 0 TRDDGDEEGLLT(1)HS(1)EEELEHS(0.004)QDT(0.996)DADDGALQ 231.8 5.35E-40 790660000 224600 267280 229400 256770 337880 259900 324800 376460 236250 339500 TRUE FALSE FALSE 274561.4951 298536.071 314264.6061 270796.6949 304239.4808 273507.9621 255403.8266 284132.5947 283663.208 254868.898 1.077265595 1.171331902 1.233044159 1.062494078 1.19370972 1.073131968 1.002098838 1.114818626 1.112976947 1 17.9593958 -6.369553761 6.912249331 1.063193702 1.148727186 0.350488503 0.059234785 0.311280018 17.482193 0.020901404 0.018386232 4.27E-07 6.369553761 0.085533484 TRDDGDEEGLLT(ph)HS(ph)EEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_A486_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 0 TRDDGDEEGLLT(1)HS(1)EEELEHS(0.061)QDT(0.939)DADDGALQ 182.4 3.99E-21 795300000 171320 165660 134020 93667 188310 180450 231870 211030 155780 209180 TRUE FALSE FALSE 159311.3527 152532.4983 185916.1332 218061.5097 164690.4039 158187.9137 173853.6735 162983.0758 169283.1358 156799.9665 1.016016497 0.972783998 1.185689878 1.390698701 1.050321678 1.008851706 1.10876091 1.039433103 1.079612067 1 17.25856573 TRDDGDEEGLLT(ph)HS(ph)EEELEHSQDTDADDGALQ ddPTM_HeLa_A485_30min_R1 3 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 2 0 TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ ;; 186.08 1.37E-19 9191100000 2610920 3189910 2811130 2890010 3743220 2914880 4221200 4002900 3019520 4461830 TRUE FALSE FALSE 3191710.146 3562942.226 3851083.968 3047883.928 3370531.874 3067498.61 3319306.136 3021182.499 3625509.967 3349577.895 0.95286936 1.063698871 1.149722171 0.909930751 1.006255707 0.915786617 0.990962515 0.90195917 1.082378163 1 21.67554787 -5.276152597 24.98859343 0.968199285 1.056257018 0.237357098 0.067841545 1019.253532 1731074.397 0.018404485 0.027432501 5.29E-06 5.276152597 0.088057733 TRDDGDEEGLLT(ph)HS(ph)EEELEHSQDTDADDGALQ ddPTM_HeLa_A486_30min_R1 5 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 2 0 TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(1)HS(1)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.927)HS(0.737)EEELEHS(0.332)QDT(0.004)DADDGALQ ;;;; 252.72 4.68E-62 13728550000 2469510 2542370 2054790 1075609 3019480 2523860 2957820 2998540 2349470 2927370 TRUE FALSE FALSE 2296410.102 2340903.342 2850459.717 2504072.11 2640748.663 2212491.814 2217742.151 2315837.9 2553123.951 2194337.498 1.046516365 1.066792754 1.299006976 1.141151766 1.203437787 1.008273256 1.010665931 1.05536997 1.163505593 1 21.065354 -6.26430146 24.99819291 1.048717509 1.154314914 0.304333322 0.078409435 346.9963723 3030742.559 0.028272472 0.026061531 5.44E-07 6.26430146 0.105597405 TRDDGDEEGLLT(ph)HSEEELEHS(ph)QDTDADDGALQ ddPTM_HeLa_A485_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 2 0 TRDDGDEEGLLT(0.737)HS(0.265)EEELEHS(0.85)QDT(0.148)DADDGALQ 130.53 5.75E-05 6667200000 191580 265060 211330 278410 299030 269120 301640 312130 212050 274720 TRUE FALSE FALSE 234196.3101 296056.4613 289509.7612 293618.8333 269257.5232 283210.7071 237192.1498 235579.6281 254606.49 206237.3598 1.135566855 1.435513243 1.403769721 1.423693717 1.305571034 1.373226981 1.150093029 1.142274262 1.234531368 1 17.65394617 -6.765687545 24.50571659 1.143580781 1.354571485 0.539562641 0.096640358 66.85575769 385652.6594 0.038347722 0.026898243 1.72E-07 6.765687545 0.210990704 TRDDGDEEGLLTHS(ph)EEELEHS(ph)QDT(ph)DADDGALQ ddPTM_HeLa_A485_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 0 TRDDGDEEGLLT(0.013)HS(0.987)EEELEHS(1)QDT(1)DADDGALQ 169.89 1.10E-14 379850000 34822 39526 36342 39938 49111 39919 46421 54313 34768 51177 TRUE FALSE FALSE 42568.03377 44148.22187 49786.41812 42119.71181 44221.3364 42009.09711 36502.77413 40992.65159 41745.61869 38419.51574 1.107979446 1.149109275 1.295862719 1.096310326 1.151012332 1.093431198 0.950110209 1.066974708 1.086573266 1 15.22955171 -6.403894136 3.034359235 1.030540833 1.164535437 0.507591071 0.061668973 0.23118267 4.066154941 0.024372565 0.020791156 3.95E-07 6.403894136 0.133994604 TRDDGDEEGLLTHS(ph)EEELEHS(ph)QDT(ph)DADDGALQ ddPTM_HeLa_A486_30min_R1 2 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 3 0 T(0.001)RDDGDEEGLLT(0.054)HS(0.946)EEELEHS(1)QDT(1)DADDGALQ;TRDDGDEEGLLT(0.11)HS(0.89)EEELEHS(1)QDT(1)DADDGALQ ; 162.05 2.10E-14 1408690000 104979 111914 89812 48761 128398 109265 123113 132164 89372 137383 TRUE FALSE FALSE 97620.51421 103045.5271 124589.6116 113518.0722 112293.1256 95784.99523 92308.82524 102073.1423 97118.83692 102981.4026 0.947943141 1.00062268 1.209826323 1.102316238 1.090421404 0.93011935 0.896364032 0.991180347 0.943071608 1 16.6520243 -6.260494909 24.94885226 0.948109396 1.075897481 0.416672244 0.069612345 86.85323454 2294297.435 0.025430874 0.02403627 5.49E-07 6.260494909 0.127788085 TRDDGDEEGLLTHS(ph)EEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_A486_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 2 0 TRDDGDEEGLLT(0.123)HS(0.877)EEELEHS(0.052)QDT(0.948)DADDGALQ 101.04 0.0037919 1160800000 321210 353140 261690 124290 388420 320390 367300 346280 263790 335850 TRUE FALSE FALSE 298694.8377 325155.9003 363023.3763 289353.4013 339700.7417 280863.5393 275397.6551 267439.6032 286655.5296 251750.974 1.186469442 1.291577527 1.44199393 1.149363582 1.349352244 1.115640328 1.093928857 1.062318048 1.138647152 1 17.94163783 -6.372323577 5.010239505 1.082443163 1.285076235 0.60164251 0.082334906 0.163226014 6.169875876 0.028993504 0.025404023 4.24E-07 6.372323577 0.202633071 TRDDGDEEGLLTHS(ph)EEELEHSQDTDADDGALQ ddPTM_HeLa_A485_30min_R1 5 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLT(0.041)HS(0.959)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.009)HS(0.934)EEELEHS(0.054)QDT(0.004)DADDGALQ;TRDDGDEEGLLT(0.176)HS(0.822)EEELEHS(0.001)QDTDADDGALQ;TRDDGDEEGLLT(0.447)HS(0.552)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.142)HS(0.858)EEELEHSQDTDADDGALQ ;;;; 226.26 2.16E-39 24586140000 1991877 2476745 2318620 2052029 2916617 2430535 3196352 3164047 2374749 3285423 TRUE FALSE FALSE 2434963.167 2766378.783 3176374.024 2164126.148 2626228.371 2557794.054 2513425.283 2388059.512 2851339.342 2466427.51 0.987242948 1.121613659 1.287844062 0.87743351 1.064790415 1.037044083 1.019054999 0.96822611 1.156060468 1 21.23399146 -5.266136622 24.99686867 1.019039355 1.131171563 0.235721009 0.094626585 581.7200024 3095689.94 0.026089785 0.040086624 5.42E-06 5.266136622 0.112132207 TRDDGDEEGLLTHS(ph)EEELEHSQDTDADDGALQ ddPTM_HeLa_A486_30min_R1 5 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLT(0.038)HS(0.962)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.074)HS(0.926)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.16)HS(0.839)EEELEHSQDTDADDGALQ;TRDDGDEEGLLT(0.129)HS(0.871)EEELEHSQDTDADDGALQ;TRDDGDEEGLLTHS(1)EEELEHSQDTDADDGALQ ;;;; 305.36 1.38E-93 35323510000 3737290 3602480 2660180 1259394 4023500 3205270 3798080 3982190 3199910 3755890 TRUE FALSE FALSE 3475325.27 3317006.365 3690272.938 2931932.878 3518835.112 2809836.376 2847760.212 3075532.268 3477280.775 2815390.697 1.234402484 1.178169115 1.310749851 1.041394674 1.249856766 0.998027158 1.011497344 1.092399812 1.235097061 1 21.42490371 -5.267423326 24.98490678 1.093191646 1.234813347 0.372339822 0.089863609 538.6052741 2248851.084 0.025266394 0.038634821 5.40E-06 5.267423326 0.141621701 TRDDGDEEGLLTHSEEELEHS(ph)QDTDADDGALQ ddPTM_HeLa_A485_30min_R1 3 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLT(0.001)HS(0.001)EEELEHS(0.945)QDT(0.054)DADDGALQ;T(0.008)RDDGDEEGLLT(0.059)HS(0.059)EEELEHS(0.677)QDT(0.197)DADDGALQ;TRDDGDEEGLLT(0.029)HS(0.121)EEELEHS(0.717)QDT(0.133)DADDGALQ ;; 74.397 0.00072838 3327180000 134655 150765 148192 153129 179262 160971 204366 224065 154109 198065 TRUE FALSE FALSE 164608.5402 168395.6553 203014.3876 161494.0495 161414.0459 169399.1927 160701.5346 169112.7074 185037.2627 148691.0406 1.107050832 1.132520524 1.365343781 1.086104777 1.085566724 1.139269669 1.080774833 1.137342954 1.244441238 1 17.18195819 TRDDGDEEGLLTHSEEELEHS(ph)QDTDADDGALQ ddPTM_HeLa_A486_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLT(0.001)HS(0.359)EEELEHS(0.48)QDT(0.16)DADDGALQ 263.97 3.57E-64 301740000 100680 91355 85725 36626 108950 95614 113290 116160 89756 114030 TRUE FALSE FALSE 93622.85191 84115.69709 118920.0158 85267.17898 95284.47508 83818.11681 84943.64374 89712.90375 97536.12235 85476.14579 1.095309704 0.984083879 1.391265536 0.997555262 1.114749316 0.980602436 0.993770168 1.049566554 1.141091722 1 16.38323424 TRDDGDEEGLLTHSEEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_A485_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLTHSEEELEHS(0.035)QDT(0.965)DADDGALQ 152.53 1.15E-09 1029400000 120090 146530 154660 143060 204380 146430 196910 203880 138460 172200 TRUE FALSE FALSE 146803.6062 163665.4089 211875.1699 150875.0056 184031.2096 154096.8484 154838.5699 153878.1103 166247.652 129273.7091 1.135602956 1.266037851 1.63896566 1.167097367 1.42357801 1.192020013 1.197757618 1.190327959 1.286012857 1 16.98006937 -6.338392433 9.499582049 1.186319242 1.33137188 0.209261017 0.147486624 0.827717442 97.86764779 0.051432749 0.045337178 4.59E-07 6.338392433 0.145052638 TRDDGDEEGLLTHSEEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_A486_30min_R1 2 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9;Q9UKM9-2 Q9UKM9 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLTHSEEELEHS(0.201)QDT(0.799)DADDGALQ;TRDDGDEEGLLTHSEEELEHS(0.097)QDT(0.903)DADDGALQ ; 113.98 7.13E-05 3912400000 722320 698990 549940 285080 794470 681580 773070 804920 575750 602420 TRUE FALSE FALSE 671689.0981 643599.4867 762891.4959 663680.6471 694820.1645 597493.5894 579639.7093 621657.2873 625656.4736 451570.1109 1.487452517 1.425248198 1.689419821 1.469717838 1.538676161 1.323146893 1.283609555 1.376657295 1.385513475 1 18.78459047 -6.307996415 4.601027132 1.294750451 1.52370644 0.514259181 0.119970067 0.193391028 9.289033493 0.041418042 0.037078917 4.92E-07 6.307996415 0.228955989 TRDELEVIHLIEEHR ddPTM_HeLa_A486_30min_R1 1 TRDELEVIHLIEEHR 15 1 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 0 164.62 5.11E-12 33501000 18172 15941 14316 5358.7 20025 16561 17905 14595 10624 17913 FALSE FALSE TRUE 16898.23664 14677.7771 19859.5386 12475.32441 17513.27777 14517.8722 13424.97962 11272.03711 11544.89687 13427.46821 1.258482715 1.093115759 1.479023319 0.929089849 1.304287413 1.081206969 0.999814665 0.839475986 0.859796999 1 13.71289968 -6.740220165 1.92910608 0.889532892 1.206533409 0.485235813 0.140467228 0.275465593 2.099341975 0.067778297 0.043651992 1.82E-07 6.740220165 0.317000517 TRDPTPRPPGLPEEATALAAPS(ph)PPR ddPTM_HeLa_A485_30min_R1 1 TRDPTPRPPGLPEEATALAAPSPPR 25 2 Q96GP6-2;Q96GP6 Q96GP6-2 SCARF2 Scavenger receptor class F member 2 1 0 TRDPTPRPPGLPEEATALAAPS(1)PPR 98.236 0.00077687 266120000 59266 67855 51935 80621 57812 63801 90189 87558 60798 146160 TRUE FALSE FALSE 72449.51723 75790.05199 71147.9177 85025.12109 52056.03429 67141.5217 70919.38337 66084.26321 72999.60093 109725.0019 0.66028267 0.690727279 0.648420291 0.774892865 0.474422724 0.611907228 0.6463375 0.602271698 0.665295964 1 16.74353277 -8.055378613 19.89243445 1.000000001 0.638814423 0.695411893 0.071348469 711.2917711 255502.3355 0.069787107 0.018018954 8.80E-09 8.055378613 -0.361185578 TRDPTPRPPGLPEEATALAAPS(ph)PPR ddPTM_HeLa_A486_30min_R1 1 TRDPTPRPPGLPEEATALAAPSPPR 25 2 Q96GP6-2;Q96GP6 Q96GP6-2 SCARF2 Scavenger receptor class F member 2 1 0 TRDPTPRPPGLPEEATALAAPS(1)PPR 132.37 1.90E-06 164210000 131870 132850 109840 52738 187630 163600 123960 142280 166210 196200 TRUE FALSE FALSE 122626.594 122322.4822 152372.9896 122776.7292 164095.6958 143416.6954 92943.89688 109885.95 180617.2166 147070.243 0.833796093 0.831728293 1.036055878 0.834816934 1.11576409 0.975157805 0.631969425 0.747166441 1.228101708 1 17.16614585 TREEEEDSTIEASDQVS(ph)DDTVEMPLPK ddPTM_HeLa_A485_30min_R1 1 TREEEEDSTIEASDQVSDDTVEMPLPK 27 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 TREEEEDSTIEAS(0.001)DQVS(0.96)DDT(0.039)VEMPLPK 107.29 0.00023069 126710000 53064 53055 46040 57308 74500 64801 84325 95622 46096 93487 TRUE FALSE FALSE 64867.90373 59259.32073 63072.11188 60438.59093 67082.51841 68193.88016 66308.27488 72170.55457 55347.04438 70182.4114 0.92427579 0.844361423 0.898688298 0.861164353 0.955830914 0.971666245 0.944799039 1.028328225 0.788617024 1 16.0988219 -5.768612467 24.97340668 0.950625903 0.880608521 0.210469509 0.062571327 239.7835999 834814.9149 0.018232804 0.021104012 1.70E-06 5.768612467 -0.070017382 TREEEEDSTIEASDQVS(ph)DDTVEMPLPK ddPTM_HeLa_A486_30min_R1 1 TREEEEDSTIEASDQVSDDTVEMPLPK 27 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 TREEEEDSTIEAS(0.001)DQVS(0.928)DDT(0.071)VEMPLPK 96.77 0.0010495 101810000 56154 68772 31488 25150 61818 71100 77556 81017 42091 73562 TRUE FALSE FALSE 52217.89458 63322.25626 43680.99688 58550.47101 54064.21001 62328.40489 58150.6685 62571.19769 45739.48177 55141.59639 0.946978289 1.148357327 0.792160542 1.061820383 0.980461458 1.130333704 1.054569913 1.134736783 0.829491432 1 15.75085341 TREFEDRDR ddPTM_HeLa_A485_30min_R1 3 TREFEDRDR 9 2 Q13951-2;J3KS23;A0A494C0A9;Q13951 Q13951-2 CBFB Core-binding factor subunit beta 0 0 ;; ;; 129.89 0.00020213 517040000 169005 249810 217738 169729 308382 234853 331435 377740 211800 251572 FALSE FALSE TRUE 206599.5792 279023.1064 298288.347 179000.8655 277678.4053 247149.5399 260621.2047 285098.6727 254306.3173 188859.7302 1.093931348 1.477409218 1.579417416 0.947797952 1.470289113 1.308640755 1.379972344 1.509578947 1.346535426 1 17.52695559 TREFEDRDR ddPTM_HeLa_A486_30min_R1 3 TREFEDRDR 9 2 Q13951-2;J3KS23;A0A494C0A9;Q13951 Q13951-2 CBFB Core-binding factor subunit beta 0 0 ;; ;; 150.04 5.90E-05 347520000 236462 221823 214305 105733 311570 230239 294188 312110 203492 278591 FALSE FALSE TRUE 219887.2349 204244.9376 297289.6353 246151.7674 272489.9853 201834.4531 220579.0508 241049.3663 221130.8504 208830.0003 1.052948497 0.978044042 1.423596394 1.178718417 1.304841186 0.966501235 1.056261315 1.154285141 1.058903654 1 17.67196946 -6.268236835 24.99552951 1.057400035 1.188600248 0.242338146 0.123497272 931.9694943 3427016.386 0.045227209 0.040771802 5.39E-07 6.268236835 0.131200213 TRES(ph)EPLSK ddPTM_HeLa_A485_30min_R1 1 TRESEPLSK 9 1 O60669 O60669 SLC16A7 Monocarboxylate transporter 2 1 0 T(0.1)RES(0.9)EPLSK 66.485 0.0061049 199510000 373770 462720 297170 402130 439140 462440 445640 554610 360600 734950 TRUE FALSE FALSE 456913.847 516831.0789 407105.5493 424097.3437 395417.6797 486652.6433 350425.3735 418591.0279 432969.1124 551740.4908 0.828131802 0.936728566 0.737856938 0.768653653 0.716673303 0.882031773 0.635127165 0.758673751 0.784733257 1 19.07363033 -4.767886984 24.99823496 0.771871752 0.882430191 0.126890323 0.096606054 220.63406 855440.0943 0.023448202 0.050748843 1.71E-05 4.767886984 0.110558439 TRGGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_HeLa_A485_30min_R1 2 TRGGGQSVQFTDIETLKQESPNGSR 25 2 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 TRGGGQSVQFTDIET(0.029)LKQES(0.834)PNGS(0.137)R;TRGGGQSVQFTDIETLKQES(0.998)PNGS(0.002)R ; 184.43 1.15E-20 633410000 165706 224919 163744 250060 354540 308840 551280 674710 199291 525460 TRUE FALSE FALSE 202566.728 251221.3205 224319.7196 263720.1446 319240.7527 325010.3848 433494.5245 509236.3146 239286.8757 394472.4924 0.513512937 0.636853837 0.568657445 0.668538744 0.809285207 0.823911404 1.098922061 1.290929848 0.60659965 1 18.58956518 -6.040306769 1.287055505 1.012618141 0.577053632 0.52984654 0.166252587 0.33337711 1.143336957 0.072600597 0.079428801 9.11E-07 6.040306769 -0.435564509 TRGGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_HeLa_A486_30min_R1 2 TRGGGQSVQFTDIETLKQESPNGSR 25 2 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 TRGGGQSVQFTDIET(0.016)LKQES(0.98)PNGS(0.005)R;TRGGGQSVQFTDIET(0.007)LKQES(0.993)PNGSR ; 137.47 8.32E-07 479480000 378960 274880 154336 245630 372840 331630 532800 554540 225281 648490 TRUE FALSE FALSE 352396.861 253097.5077 214099.0325 571839.0535 326074.9306 290716.8624 399487.8046 428283.3475 244808.5385 486103.883 0.724941465 0.520665472 0.440438844 1.176372116 0.670792689 0.598055009 0.821815704 0.88105313 0.503613625 1 18.89090513 -14 0.13193625 1.872216379 0.602960743 0.138008173 0.208249208 304.8402573 2.519866059 72.01329356 1.555180122 1.00E-14 14 -1.269255637 TRHS(ph)PT(ph)PQQSNR ddPTM_HeLa_A485_30min_R1 1 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(0.183)RHS(0.817)PT(0.999)PQQS(0.001)NR 71.531 0.0098415 361420000 166050 210910 125820 187450 153100 206600 185850 242950 188930 252280 TRUE FALSE FALSE 202987.2496 235574.0898 172366.0538 197689.9189 137856.8264 217417.2565 146141.6292 183366.1316 226846.518 189391.2389 1.07178796 1.24384893 0.910105741 1.043817655 0.727894422 1.147979483 0.771638805 0.96818698 1.197766694 1 17.53101007 -4.767419711 24.99856235 0.962917373 1.157818457 0.211240868 0.143793194 181.3271867 757982.7526 0.035858707 0.077861022 1.71E-05 4.767419711 0.194901084 TRHS(ph)PT(ph)PQQSNR ddPTM_HeLa_A486_30min_R1 2 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 T(0.084)RHS(0.918)PT(0.988)PQQS(0.011)NR;TRHS(1)PT(0.993)PQQS(0.007)NR ; 126.16 3.47E-05 1032500000 272220 75277 143150 71155 98480 294130 165490 142390 247330 256060 TRUE FALSE FALSE 253138.7837 69311.77637 198581.5137 165652.436 86127.72011 257843.2311 124082.6516 109970.9054 268768.7635 191940.9093 1.318837056 0.361109972 1.034597129 0.863038716 0.448719975 1.343346929 0.646462768 0.572941463 1.400268262 1 17.55030271 -7.765285394 24.99875451 1.200134086 0.815481252 0.171807411 0.330265094 169.1895406 1099640.289 0.262172588 0.077693961 1.72E-08 7.765285394 -0.384652834 TRHS(ph)PTPQQSNR ddPTM_HeLa_A485_30min_R1 8 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.002)RHS(0.997)PT(0.001)PQQSNR;TRHS(1)PTPQQSNR;T(0.094)RHS(0.893)PT(0.013)PQQSNR;TRHS(0.947)PT(0.053)PQQSNR;T(0.011)RHS(0.988)PT(0.001)PQQSNR;T(0.096)RHS(0.9)PT(0.004)PQQSNR;TRHS(0.994)PT(0.006)PQQSNR;T(0.062)RHS(0.937)PT(0.001)PQQSNR ;;;;;;; 181.69 3.69E-13 1.40E+11 1976367.2 2541180.1 1620272 2231296.6 2020919 2236744.2 2572727.1 3047167.5 2197047.6 2778712.9 TRUE FALSE FALSE 2416003.265 2838349.007 2219678.038 2353186.683 1819709.208 2353856.668 2023042.938 2299844.893 2637974.901 2086030.912 1.158181909 1.360645708 1.064067663 1.128068941 0.872330893 1.128390118 0.96980487 1.102497992 1.264590513 1 20.99232911 -4.781828837 24.46626156 1.063940856 1.259413754 0.331816072 0.109623574 177.4664005 212950.4643 0.028180432 0.058784737 1.65E-05 4.781828837 0.195472898 TRHS(ph)PTPQQSNR ddPTM_HeLa_A486_30min_R1 5 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.149)RHS(0.845)PT(0.006)PQQSNR;TRHS(1)PTPQQSNR;T(0.005)RHS(0.993)PT(0.002)PQQSNR;T(0.003)RHS(0.997)PTPQQSNR;T(0.028)RHS(0.964)PT(0.008)PQQSNR ;;;; 166.48 1.04E-10 66512841000 195582 92384.4 160457 59716.9 120346 237178 174524 137530 200299 201449 TRUE FALSE FALSE 181872.7118 85063.52369 222590.2476 139023.9611 105251.0825 207917.3898 130856.2493 106217.4213 217661.0786 151004.8592 1.204416287 0.563316466 1.474060165 0.920658857 0.697004607 1.376892048 0.866569791 0.703403995 1.441417712 1 17.20423545 -7.769146255 24.99910343 1.22070862 0.977248948 0.096747828 0.299313619 458.9246275 1488571.44 0.256160169 0.071131175 1.70E-08 7.769146255 -0.243459672 TRHSPT(ph)PQQSNR ddPTM_HeLa_A485_30min_R1 1 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.299)RHS(0.281)PT(0.421)PQQSNR 100.56 0.0011411 125650000 39401 57075 32270 47454 41885 43403 54951 65661 44100 62672 TRUE FALSE FALSE 48165.61652 63749.42476 44208.01587 50046.29186 37714.78233 45675.51397 43210.26994 49557.5368 52950.46549 47049.02379 1.023732538 1.354957439 0.939616007 1.063705213 0.801606055 0.970806837 0.91840949 1.053317004 1.125431757 1 15.52187717 -4.785491881 24.98058915 0.979518593 1.18934515 0.34763111 0.112318341 205.1816541 213098.5925 0.028789221 0.059977008 1.64E-05 4.785491881 0.209826556 TRKS(ph)PSSDSWTCADTSTER ddPTM_HeLa_A485_30min_R1 1 TRKSPSSDSWTCADTSTER 19 2 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 T(0.208)RKS(0.735)PS(0.037)S(0.017)DS(0.002)WTCADTSTER 134.56 1.70E-06 357120000 97734 92269 77465 107770 155870 104590 179690 208620 93803 173950 TRUE FALSE FALSE 119474.5911 103059.0569 106122.5271 113657.2022 140351.0355 110066.1707 141297.7636 157455.6179 112628.4017 130587.4663 0.914900905 0.789195624 0.812654768 0.87035307 1.074766511 0.842854018 1.082016273 1.205748318 0.862474821 1 16.99465691 -5.649017572 5.463995826 1.016268777 0.835394252 0.379063607 0.103385933 0.216354501 9.529279746 0.031025502 0.040177585 2.24E-06 5.649017572 -0.180874525 TRKS(ph)PSSDSWTCADTSTER ddPTM_HeLa_A486_30min_R1 2 TRKSPSSDSWTCADTSTER 19 2 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHH7;H0YIQ0 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 T(0.136)RKS(0.795)PS(0.024)S(0.024)DS(0.02)WT(0.001)CADTSTER;T(0.2)RKS(0.633)PS(0.12)S(0.039)DS(0.008)WTCADTSTER ; 129.66 2.89E-06 495030000 289610 261380 165068 149621 361580 298490 422740 451960 205501 374960 TRUE FALSE FALSE 269309.8345 240667.2969 228986.7503 348325.2494 316227.2648 261665.3386 316965.9807 349058.5742 223313.9921 281067.5754 0.958167566 0.856261333 0.814703546 1.239293607 1.125093367 0.930969495 1.127721617 1.241902677 0.794520648 1 18.10055751 -5.241381583 24.96849715 1.075174651 0.874365855 0.297490941 0.132706244 963.7130355 1199655.21 0.035350887 0.061133475 5.74E-06 5.241381583 -0.200808796 TRLDHGEES(ph)NES(ph)AESSSNWEK ddPTM_HeLa_A485_30min_R1 2 TRLDHGEESNESAESSSNWEK 21 1 Q9H4L7-2;Q9H4L7 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 T(0.001)RLDHGEES(0.984)NES(0.912)AES(0.026)S(0.032)S(0.045)NWEK;T(0.003)RLDHGEES(0.98)NES(0.929)AES(0.021)S(0.034)S(0.034)NWEK ; 72.881 9.38E-05 0 196183 226828 166071 230881 280768 243249 308006 360570 209966 277694 TRUE FALSE FALSE 239823.2315 253353.5615 227507.5737 243493.4444 252813.7521 255985.1415 242198.0019 272139.6421 252104.2503 208469.9964 1.150396871 1.215299879 1.091320466 1.168002344 1.212710493 1.227923183 1.161788296 1.305413953 1.209307117 1 17.66948024 -5.632606049 5.475109926 1.202099857 1.154240138 0.012416122 0.07855315 0.585176192 25.95514019 0.022248233 0.028861242 2.33E-06 5.632606049 -0.047859719 TRLDHGEES(ph)NESAESSSNWEK ddPTM_HeLa_A485_30min_R1 1 TRLDHGEESNESAESSSNWEK 21 1 Q9H4L7-2;Q9H4L7 Q9H4L7-2 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 T(0.022)RLDHGEES(0.842)NES(0.087)AES(0.016)S(0.016)S(0.016)NWEK 43.494 0.011422 0 23823 24648 19839 32130 25994 26328 34666 36590 24679 38199 TRUE FALSE FALSE 29122.34416 27530.36919 27178.27167 33885.18054 23405.94609 27706.49337 27259.3259 27616.24513 29631.84893 28676.6923 1.01554056 0.960025965 0.947747787 1.181627929 0.81620104 0.966167683 0.950574272 0.96302059 1.033307769 1 14.80759101 -3.315187428 13.79660889 0.98022239 0.986228949 0 0.086463126 0 0 0.019134979 0 0.000483963 3.315187428 0.006006558 TRLS(ph)PPR ddPTM_HeLa_A485_30min_R1 8 TRLSPPR 7 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 T(0.128)RLS(0.872)PPR;T(0.007)RLS(0.993)PPR;T(0.002)RLS(0.998)PPR;T(0.037)RLS(0.963)PPR;T(0.003)RLS(0.997)PPR;T(0.017)RLS(0.983)PPR;T(0.034)RLS(0.966)PPR;T(0.002)RLS(0.998)PPR ;;;;;;; 84.213 0.0044522 39799980000 572943 930557 857377 711673 987968 785217 988403 974904 821156 967188 TRUE FALSE FALSE 700392.1937 1039377.546 1174556.431 750549.8939 889602.437 826329.7479 777222.6245 735807.2654 985954.4771 726085.8314 0.964613498 1.431480276 1.617655076 1.033693073 1.22520286 1.138060698 1.070428028 1.013388822 1.35790348 1 19.46978058 -5.300295494 24.99759003 1.123462963 1.347273126 0.23153111 0.181764397 745.0006699 479285.2071 0.050861907 0.075441807 5.01E-06 5.300295494 0.223810164 TRLS(ph)PPR ddPTM_HeLa_A486_30min_R1 13 TRLSPPR 7 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 T(0.003)RLS(0.997)PPR;T(0.007)RLS(0.993)PPR;T(0.016)RLS(0.984)PPR;T(0.057)RLS(0.943)PPR;T(0.048)RLS(0.952)PPR;T(0.004)RLS(0.996)PPR;T(0.003)RLS(0.997)PPR;T(0.004)RLS(0.996)PPR;T(0.022)RLS(0.978)PPR;T(0.015)RLS(0.985)PPR;T(0.025)RLS(0.975)PPR;T(0.003)RLS(0.997)PPR;T(0.007)RLS(0.993)PPR ;;;;;;;;;;;; 81.338 0.0036637 44955210000 1943821 1921482 1354984 689109.2 1958592 1919802 2081713 2025855 1610171 2390097 TRUE FALSE FALSE 1807569.186 1769216.768 1879670.093 1604281.043 1712927.128 1682956.348 1560846.389 1564612.041 1749741.919 1791601.154 1.008912716 0.987505932 1.049156554 0.895445417 0.95608731 0.939358821 0.871201933 0.873303769 0.976635851 1 20.77281807 -5.264662884 24.9889394 0.92400213 1.012423155 0.452293853 0.042388063 238.5074351 1848935.986 0.011750608 0.018286256 5.44E-06 5.264662884 0.088421025 TRNS(ph)GIWESPELDR ddPTM_HeLa_A485_30min_R1 4 TRNSGIWESPELDR 14 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 T(0.015)RNS(0.985)GIWESPELDR;T(0.001)RNS(0.999)GIWESPELDR;T(0.136)RNS(0.864)GIWESPELDR;T(0.054)RNS(0.946)GIWESPELDR ;;; 214.59 2.34E-23 2535480000 559250 636750 523950 577000 699230 569050 671590 609100 550447 730920 TRUE FALSE FALSE 683653.2331 711212.3735 717780.9084 608520.049 629612.2061 598844.5781 528099.3101 459717.27 660916.6639 548715.0956 1.245916576 1.296141439 1.308112195 1.108990902 1.14743008 1.091357943 0.962428981 0.837806858 1.204480557 1 19.06569774 -5.81058129 1.002636269 0.994301058 1.290418148 0.582061222 0.093674933 0.368062425 0.796093917 0.043917897 0.064461305 1.55E-06 5.81058129 0.29611709 TRNS(ph)GIWESPELDR ddPTM_HeLa_A486_30min_R1 3 TRNSGIWESPELDR 14 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 T(0.007)RNS(0.993)GIWESPELDR;T(0.142)RNS(0.858)GIWESPELDR;T(0.145)RNS(0.855)GIWESPELDR ;; 192.46 3.40E-18 2028860000 374619 413080 326306 121325 420660 363863 408260 390786 358496 425540 TRUE FALSE FALSE 348360.1426 380346.0364 452660.422 282450.7314 367896.9003 318973.2825 306109.0299 301812.5586 389570.7219 318982.0142 1.092099639 1.192374552 1.419078198 0.885475415 1.153346847 0.999972627 0.959643542 0.94617422 1.221293692 1 18.28311555 -5.270183451 24.99949967 1.023202349 1.230303177 0.395828475 0.119319886 635.0994088 1815763.09 0.032999307 0.049801216 5.37E-06 5.270183451 0.207100828 TRPAS(ph)QPTPFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_A485_30min_R1 1 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.032)RPAS(0.935)QPT(0.032)PFALHHAASCEVDPSSGDSISLAR 297.4 6.84E-93 1138700000 277290 346960 359850 233570 458730 313530 407200 434940 354880 417410 TRUE FALSE FALSE 338972.2039 387533.9538 492973.4896 246329.3377 413057.2305 329945.946 320198.3935 328270.283 426101.1608 313357.3689 1.081743203 1.236715624 1.573198969 0.78609716 1.318166641 1.052938207 1.021831383 1.047590756 1.359793013 1 18.25744939 -5.257321943 24.99542371 1.091657441 1.291168866 0.209174473 0.189645279 599.3177938 3638220.212 0.050643339 0.083802313 5.53E-06 5.257321943 0.199511425 TRPAS(ph)QPTPFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_A486_30min_R1 1 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.243)RPAS(0.72)QPT(0.037)PFALHHAASCEVDPSSGDSISLAR 228.07 1.65E-39 1066500000 204500 214950 204390 30270 212570 148140 238380 213800 191840 185420 TRUE FALSE FALSE 190165.606 197916.5792 283535.2818 70470.08976 185907.4885 129863.993 178734.8027 165122.4072 208468.8457 138989.6251 1.368200007 1.423966566 2.039974433 0.507016906 1.337563781 0.93434307 1.285957873 1.18801966 1.499887819 1 17.08461767 -5.248160592 24.99996295 1.125177128 1.592038887 0.362707998 0.304716848 916.78584 1726029.467 0.080679808 0.138678855 5.65E-06 5.248160592 0.466861759 TRPASQPT(ph)PFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_A485_30min_R1 1 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.009)RPAS(0.01)QPT(0.981)PFALHHAASCEVDPSSGDSISLAR 140.97 1.12E-07 939380000 150000 213070 201310 135090 284110 182980 235760 292710 194730 239570 TRUE FALSE FALSE 183366.9825 237986.683 275782.9462 142469.6246 255823.0108 192560.5499 185387.95 220922.4135 233810.5248 179849.608 1.01955731 1.323253833 1.533408659 0.792159773 1.422427403 1.070675394 1.030794296 1.228373062 1.300033553 1 17.45643149 -5.233084525 24.99983417 1.136902384 1.295191215 0.129216535 0.200810134 1642.74837 1448372.362 0.053058283 0.09187767 5.85E-06 5.233084525 0.158288832 TRPASQPT(ph)PFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_A486_30min_R1 1 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.093)RPAS(0.356)QPT(0.551)PFALHHAASCEVDPSSGDSISLAR 222.38 6.10E-39 1147000000 229510 242660 201530 34843 257380 192960 240750 233360 233700 171830 TRUE FALSE FALSE 213422.5342 223430.7378 279567.8132 81116.26487 225097.0004 169154.5571 180511.8036 180229.0222 253957.3042 128802.6496 1.656973167 1.734675013 2.170512905 0.62977171 1.747611568 1.313284763 1.401460329 1.399264866 1.97167764 1 16.97480275 -5.202424569 24.99999774 1.385444328 1.84211546 0.278008931 0.367935617 365.8692917 154989.5187 0.095684804 0.165730891 6.27E-06 5.202424569 0.456671132 TRPGS(ph)FQSLSDALSDTPAK ddPTM_HeLa_A485_30min_R1 2 TRPGSFQSLSDALSDTPAK 19 1 G3V4K3;Q9H9C1;Q9H9C1-2 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 T(0.023)RPGS(0.94)FQS(0.037)LSDALSDTPAK;T(0.006)RPGS(0.991)FQS(0.002)LSDALSDTPAK ; 242.05 5.52E-46 1284730000 754540 649360 537120 931410 967680 754850 1216270 1239440 778780 1295410 TRUE FALSE FALSE 922384.8199 725297.0033 735823.0394 982290.5698 871334.3815 794372.7788 956403.9785 935465.3966 935074.0026 972488.1273 0.948479261 0.745815792 0.756639612 1.010079756 0.895984596 0.816845735 0.983460828 0.961929889 0.961527423 1 19.89132111 -6.50092185 0.486312754 0.999805199 0.822959122 0.295601867 0.079470029 1.328544617 0.675812975 0.078958911 0.088357757 3.16E-07 6.50092185 -0.176846077 TRPGS(ph)FQSLSDALSDTPAK ddPTM_HeLa_A486_30min_R1 1 TRPGSFQSLSDALSDTPAK 19 1 G3V4K3;Q9H9C1;Q9H9C1-2 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 T(0.035)RPGS(0.678)FQS(0.275)LS(0.013)DALSDTPAK 172.49 4.42E-13 760680000 301710 255380 127080 109260 225140 253800 346830 338730 202720 341990 TRUE FALSE FALSE 280561.687 235142.7587 176288.7793 254362.8017 196900.8419 222488.7364 260049.4656 261608.5734 220291.9328 256353.478 1.094432926 0.917259873 0.687678516 0.992234643 0.768083364 0.867898256 1.014417544 1.020499411 0.859328824 1 17.96777495 -6.751082123 24.85020827 0.97526973 0.879455402 0.118749341 0.112832402 396.4886519 951298.6552 0.043656309 0.033427948 1.77E-07 6.751082123 -0.095814328 TRPGSFQSLSDALS(ph)DTPAK ddPTM_HeLa_A485_30min_R1 1 TRPGSFQSLSDALSDTPAK 19 1 G3V4K3;Q9H9C1;Q9H9C1-2 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 TRPGSFQSLSDALS(0.5)DT(0.5)PAK 121.62 5.55E-06 98823000 84447 69080 56725 112250 100770 76212 124070 119810 56269 145910 TRUE FALSE FALSE 103231.9438 77158.30508 77709.93802 118381.9333 90736.98498 80202.34247 97561.43094 90426.40965 67561.67217 109537.3223 0.942436255 0.704401965 0.709437993 1.080745182 0.828365922 0.732191922 0.890668394 0.825530584 0.616791344 1 16.74106299 -8.973147987 13.41474281 0.999999971 0.816560313 0.159954668 0.127448263 0 0 0.123020813 0.02983693 1.06E-09 8.973147987 -0.183439658 TRPGSFQSLSDALSDT(ph)PAK ddPTM_HeLa_A486_30min_R1 1 TRPGSFQSLSDALSDTPAK 19 1 G3V4K3;Q9H9C1;Q9H9C1-2 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 TRPGSFQSLSDALS(0.041)DT(0.959)PAK 71.656 0.0060515 98028000 80485 67750 37287 80489 75915 93391 124190 122890 67962 129240 TRUE FALSE FALSE 74843.41712 62381.24326 51725.52498 187382.4597 66393.03282 81869.36795 93116.34845 94910.62967 73853.00088 96877.46279 0.772557569 0.643919044 0.533927329 1.934221379 0.685330013 0.845081669 0.961176581 0.979697723 0.762334177 1 16.56387346 TRQS(ph)PQTLKR ddPTM_HeLa_A485_30min_R1 1 TRQSPQTLKR 10 2 M0QXV1;M0QXD7;M0QX88;M0R025;M0R200;M0QYG0;M0R073;M0QYA8;Q8IV63-2;Q8IV63-3;Q8IV63 M0QXV1 VRK3 Inactive serine/threonine-protein kinase VRK3 1 0 T(0.043)RQS(0.956)PQTLKR 66.004 0.0082015 122000000 41959 50936 40481 54191 69516 57657 77394 84035 48478 76786 TRUE FALSE FALSE 51292.63479 56892.52212 55456.60645 57151.31711 62594.74295 60675.83137 60858.13965 63425.28449 58207.08993 57644.66334 0.889807171 0.98695211 0.962042334 0.991441598 1.085872296 1.052583671 1.055746293 1.100280248 1.009756785 1 15.81489943 -4.966603448 0.93044919 1.05621617 0.902061525 0.62821641 0.036286609 0.551064808 0.735051618 0.013624141 0.06951012 1.08E-05 4.966603448 -0.154154645 TRS(ph)EREWDRDK ddPTM_HeLa_A485_30min_R1 3 TRSEREWDRDK 11 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.075)RS(0.925)EREWDRDK;T(0.32)RS(0.68)EREWDRDK;T(0.183)RS(0.817)EREWDRDK ;; 109.55 0.0033575 1983440000 752090 551720 619360 1124930 1310980 754090 1242910 1138760 638810 1300250 TRUE FALSE FALSE 919389.8258 616238.8547 848487.0377 1186382.077 1180454.228 793572.9864 977352.1249 859477.3245 767013.3075 976121.6043 0.941880419 0.631313611 0.86924317 1.215403974 1.209331115 0.812985783 1.001260622 0.880502307 0.785776387 1 19.89670136 -5.004621272 24.77125679 0.988634908 0.777517325 0.222957657 0.15248187 258.8187296 1387371.835 0.042338709 0.084625733 9.89E-06 5.004621272 -0.211117584 TRS(ph)EREWDRDK ddPTM_HeLa_A486_30min_R1 2 TRSEREWDRDK 11 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.051)RS(0.949)EREWDRDK;T(0.27)RS(0.73)EREWDRDK ; 101.42 0.0069195 1235310000 322600 323250 259710 256590 499150 446540 609050 580790 294770 502290 TRUE FALSE FALSE 299987.4059 297634.4927 360276.6673 597354.4873 436541.9526 391450.4349 456659.2481 448556.7956 320320.9009 376513.3146 0.796751122 0.790501906 0.9568763 1.586542797 1.159432975 1.039672223 1.212863478 1.19134378 0.850755839 1 18.52234136 -5.00677098 23.70752074 1.164175565 0.813641894 0.388299462 0.17973107 154.964326 542598.2745 0.048131141 0.094377676 9.85E-06 5.00677098 -0.35053367 TRS(ph)LDFR ddPTM_HeLa_A485_30min_R1 3 TRSLDFR 7 1 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 0 T(0.061)RS(0.939)LDFR;T(0.013)RS(0.987)LDFR;T(0.371)RS(0.629)LDFR ;; 126.71 0.00084176 2519670000 638400 805800 680070 755750 1142300 785480 1124300 1246770 712510 964620 TRUE FALSE FALSE 780409.8775 900031.3005 931656.1931 797034.7088 1028568.601 826606.5182 884084.1203 940997.7026 855504.2215 724157.9865 1.077679031 1.242865945 1.286537207 1.100636496 1.420364921 1.141472626 1.220844259 1.299437029 1.181377873 1 19.46594495 -10.26643708 8.392202767 0.999999843 1.224288372 0.313930032 0.096855089 2.66E-07 2.33E-08 0.087996272 0.021342216 5.41E-11 10.26643708 0.224288528 TRS(ph)LDFR ddPTM_HeLa_A486_30min_R1 4 TRSLDFR 7 1 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 0 T(0.053)RS(0.947)LDFR;T(0.03)RS(0.97)LDFR;T(0.495)RS(0.505)LDFR;T(0.032)RS(0.968)LDFR ;;; 122.57 0.00050553 1845010000 886770 911740 726630 397941 1098900 886660 1145630 1169010 715611 1088440 TRUE FALSE FALSE 824612.0023 839490.4019 1008000.596 926426.7588 961065.7152 777272.9041 858981.2568 902851.9423 777640.7377 815887.5394 1.010693217 1.028929064 1.235465119 1.135483402 1.177938954 0.95267162 1.052818207 1.106588713 0.953122459 1 19.63801078 -6.257209393 24.98186754 1.02218812 1.120300379 0.327382628 0.074387288 512.8591254 3028896.718 0.026359105 0.025463082 5.53E-07 6.257209393 0.098112259 TRS(ph)LSSLR ddPTM_HeLa_A485_30min_R1 6 TRSLSSLR 8 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 T(0.174)RS(0.826)LSSLR;T(0.244)RS(0.756)LSSLR;T(0.042)RS(0.956)LS(0.002)SLR;T(0.186)RS(0.814)LSSLR;T(0.021)RS(0.979)LSSLR;T(0.001)RS(0.999)LSSLR ;;;;; 134.38 0.00024187 4011300000 397881 532306 524103 373489 694562 533603 751874 906550 425628 547551 TRUE FALSE FALSE 486388.2558 594554.5563 717990.5094 393891.7583 625408.9685 561541.628 591229.9777 684217.1911 511047.6355 411056.6126 1.183263426 1.446405527 1.74669495 0.958242116 1.52146675 1.366093163 1.438317642 1.664532743 1.243253654 1 18.64897758 -8.00587981 24.64195545 0.999999974 1.417501751 0.271718859 0.212108409 223.9709432 938654.4792 0.197930538 0.051105445 9.87E-09 8.00587981 0.417501777 TRS(ph)LSSLR ddPTM_HeLa_A486_30min_R1 5 TRSLSSLR 8 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 T(0.481)RS(0.518)LSSLR;TRS(1)LSSLR;T(0.189)RS(0.811)LSSLR;T(0.018)RS(0.982)LSSLR;T(0.187)RS(0.813)LSSLR ;;;; 138.76 0.0002151 3374640000 581847 462123 432868 185264.3 668463 456643 631137 678353 419366 607924 TRUE FALSE FALSE 541062.53 425502.6905 600486.0822 431304.6531 584618.1374 400307.0295 473219.8471 523906.8302 455716.9825 455695.8735 1.18733252 0.933742689 1.317734299 0.946474783 1.28291295 0.878452171 1.038455414 1.149685263 1.000046323 1 18.79771178 -6.266702181 24.99840648 1.024253649 1.122363526 0.168048352 0.131547938 977.309648 4642222.895 0.043302616 0.039222815 5.41E-07 6.266702181 0.098109877 TRS(ph)NPEGAEDR ddPTM_HeLa_A485_30min_R1 7 TRSNPEGAEDR 11 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 T(0.003)RS(0.997)NPEGAEDR;T(0.082)RS(0.918)NPEGAEDR;T(0.279)RS(0.721)NPEGAEDR;T(0.287)RS(0.713)NPEGAEDR;T(0.191)RS(0.809)NPEGAEDR;T(0.219)RS(0.781)NPEGAEDR;T(0.009)RS(0.991)NPEGAEDR ;;;;;; 200.06 5.92E-15 18731779000 2153579 2490887 2276287 2850400 3271970 2794152 4119079 4240280 2574124 4265105 TRUE FALSE FALSE 2632635.219 2782174.567 3118380.286 3006110.134 2946201.178 2940449.478 3239004.122 3200344.681 3090727.076 3201892.817 0.822212163 0.868915584 0.973917762 0.93885408 0.920143598 0.918347255 1.011590427 0.999516494 0.965281242 1 21.61049358 -2.134672637 0.388622149 0.986598947 7.50E-15 0.715165578 0.031034067 17.11314228 0.534156792 0.025766449 11.07276007 0.007333771 2.134672637 -0.986598947 TRS(ph)NPEGAEDR ddPTM_HeLa_A486_30min_R1 8 TRSNPEGAEDR 11 1 M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0R3H9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 T(0.004)RS(0.996)NPEGAEDR;T(0.235)RS(0.765)NPEGAEDR;T(0.178)RS(0.822)NPEGAEDR;T(0.141)RS(0.859)NPEGAEDR;T(0.196)RS(0.804)NPEGAEDR;T(0.159)RS(0.841)NPEGAEDR;T(0.039)RS(0.961)NPEGAEDR;T(0.003)RS(0.997)NPEGAEDR ;;;;;;; 206.13 3.59E-15 14346203000 2181373 2152267 1567028 897473 2237141 2078784 2579209 2455264 1691591 2716396 TRUE FALSE FALSE 2028470.017 1981713.524 2173823.208 2089362.5 1956537.915 1822324.766 1933863.628 1896253.985 1838219.47 2036192.761 0.996207263 0.973244558 1.067592052 1.026112331 0.960880499 0.894966724 0.94974487 0.931274299 0.902772815 1 20.95744271 -5.908652335 4.331660111 0.93185772 1.016051928 0.536907073 0.034973128 0.162408782 5.569501974 0.011093679 0.012659954 1.23E-06 5.908652335 0.084194208 TRS(ph)PDVISSASTALSQDIPEIASEALSR ddPTM_HeLa_A485_30min_R1 1 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 T(0.278)RS(0.722)PDVISSASTALSQDIPEIASEALSR 149.99 1.51E-09 425180000 16448 22926 23075 20088 27453 21768 31069 33389 21473 26380 TRUE FALSE FALSE 20106.80086 25606.99627 31611.40273 21185.35657 24719.68293 22907.73882 24430.85434 25200.2954 25782.43414 19803.95149 1.015292371 1.293024591 1.596216934 1.069754013 1.248219727 1.156725658 1.233635336 1.272488241 1.301883321 1 14.2735007 TRS(ph)PS(ph)PDDILER ddPTM_HeLa_A485_30min_R1 1 TRSPSPDDILER 12 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 T(0.018)RS(0.982)PS(1)PDDILER 134.88 7.11E-05 376350000 327450 365160 367620 305970 452780 348270 417700 444270 313290 394140 TRUE FALSE FALSE 400290.1228 407862.2855 503617.9359 322684.3663 407699.6334 366504.8787 328454.9827 335312.0859 376164.4293 295888.1516 1.352842689 1.37843399 1.702055095 1.090561973 1.377884282 1.238660205 1.110064668 1.133239314 1.271306158 1 18.1746924 -5.950224305 0.863816197 1.13270402 1.448512899 0.411889265 0.146932629 0.625268458 1.026514314 0.081201631 0.106692345 1.12E-06 5.950224305 0.315808879 TRS(ph)PS(ph)PDDILER ddPTM_HeLa_A486_30min_R1 2 TRSPSPDDILER 12 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 T(0.001)RS(0.999)PS(1)PDDILER;T(0.005)RS(0.995)PS(1)PDDILER ; 145.46 7.87E-07 1203580000 756800 710530 519760 235880 766930 631720 741720 722870 569710 731500 TRUE FALSE FALSE 703752.2281 654225.0151 721024.9917 549140.5607 670734.4881 553784.8093 556133.8109 558288.2811 619092.9215 548327.6387 1.283452043 1.19312792 1.314952851 1.001482548 1.223236694 1.00995239 1.014236328 1.018165494 1.129056567 1 19.06467867 -5.412072355 0.919760398 1.038488073 1.277779798 0.53956688 0.081117102 0.516681004 0.853855377 0.033934616 0.086404035 3.87E-06 5.412072355 0.239291725 TRS(ph)PS(ph)PTLGESLAPHK ddPTM_HeLa_A485_30min_R1 3 TRSPSPTLGESLAPHK 16 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 T(0.178)RS(0.777)PS(0.918)PT(0.126)LGES(0.001)LAPHK;T(0.42)RS(0.583)PS(0.983)PT(0.014)LGESLAPHK;T(0.379)RS(0.63)PS(0.918)PT(0.073)LGESLAPHK ;; 131.33 3.75E-05 1223190000 817430 818350 762440 724060 1197340 832760 1177130 973800 969990 1325150 TRUE FALSE FALSE 999264.4834 914048.9138 1044498.284 763613.5644 1078128.625 876362.0259 925626.5592 734974.0231 1164658.096 994814.4926 1.004473187 0.918813428 1.04994277 0.767593928 1.083748411 0.880930095 0.930451422 0.738805102 1.170728919 1 19.924068 TRS(ph)PS(ph)PTLGESLAPHK ddPTM_HeLa_A486_30min_R1 1 TRSPSPTLGESLAPHK 16 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 T(0.366)RS(0.638)PS(0.853)PT(0.143)LGESLAPHK 124.82 6.16E-05 399430000 451740 445760 308620 41064 477200 437010 511250 489110 391030 382390 TRUE FALSE FALSE 420075.3588 410436.3542 428125.9291 95599.06726 417345.1263 383096.1494 383329.8425 377750.3302 424924.7952 286637.0551 1.465530542 1.431902634 1.493616829 0.33351957 1.456005492 1.336519974 1.337335267 1.317869841 1.482448929 1 18.1288656 TRS(ph)RS(ph)PES(ph)QVIGENTKQP ddPTM_HeLa_A485_30min_R1 1 TRSRSPESQVIGENTKQP 18 3 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 0 T(0.614)RS(0.825)RS(0.825)PES(0.737)QVIGENTKQP 92.792 0.00047508 209010000 146780 152580 102800 165810 192970 204200 273530 337060 160130 253320 TRUE FALSE FALSE 179430.7046 170422.9037 140829.9979 174867.7804 173757.2292 214891.5962 215088.081 254395.5065 192266.6222 190171.986 0.943518067 0.896151464 0.740540186 0.919524395 0.913684675 1.12998555 1.131018745 1.337712835 1.011014431 1 17.53694521 -6.214744153 2.656718406 1.148950426 0.868580038 0.578202534 0.101324116 0.186833316 2.606177027 0.036761311 0.035148849 6.10E-07 6.214744153 -0.280370387 TRS(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_A485_30min_R1 2 TRSRSPESQVIGENTK 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 T(0.192)RS(0.857)RS(0.909)PES(0.043)QVIGENTK;T(0.03)RS(0.982)RS(0.977)PES(0.01)QVIGENTK ; 122.47 0.0001183 1567170000 1357500 971580 916560 2306900 1690750 1190660 1968710 1409330 1267310 3171500 TRUE FALSE FALSE 1659471.192 1085197.829 1255633.685 2432920.106 1522412.993 1253001.116 1548079.026 1063689.608 1521647.493 2380903.417 0.696992234 0.455792462 0.527376993 1.021847458 0.639426607 0.526271292 0.650206562 0.446758823 0.63910509 1 21.18307767 -8.056687246 22.03654932 1.000000002 0.618775105 0.345726905 0.155904835 6369.909299 2476230.167 0.156553031 0.040421819 8.78E-09 8.056687246 -0.381224896 TRS(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_A486_30min_R1 3 TRSRSPESQVIGENTK 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 T(0.011)RS(0.989)RS(0.934)PES(0.066)QVIGENTK;T(0.025)RS(0.975)RS(0.998)PES(0.001)QVIGENTK;T(0.231)RS(0.845)RS(0.806)PES(0.118)QVIGENTK ;; 108.25 0.00081646 2493790000 1691730 1737440 894720 842170 1705500 2156780 2579620 2343910 1417970 2350290 TRUE FALSE FALSE 1573148.463 1599758.927 1241179.545 1960614.321 1491580.287 1890698.412 1934171.792 1810252.86 1540880.781 1761762.086 0.892940355 0.908044815 0.704510305 1.112871219 0.846641155 1.073186003 1.097862082 1.02752402 0.874624782 1 20.74858768 -5.268116856 24.99828317 1.005972541 0.842453123 0.391781471 0.096647298 553.050642 2070440.303 0.026960255 0.041057911 5.39E-06 5.268116856 -0.163519417 TRS(ph)WDSSSPVDRPEPEAAS(ph)PTTR ddPTM_HeLa_A485_30min_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 T(0.172)RS(0.596)WDS(0.173)S(0.024)S(0.035)PVDRPEPEAAS(0.869)PT(0.068)T(0.062)R 75.779 0.00010988 0 111680 131210 129470 123290 157090 119400 168830 175060 97784 148200 TRUE FALSE FALSE 136522.8307 146553.8681 177366.3407 130025.0205 141449.568 125651.5994 132758.0913 132126.2605 117408.3519 111256.4674 1.227100176 1.317261563 1.594211508 1.168696288 1.271382881 1.129386923 1.193261788 1.187582741 1.055294623 1 16.76352968 -6.728931362 0.466862929 1.014474587 1.373920084 0.502358868 0.109287978 0.910771234 0.438912846 0.113480557 0.112991254 1.87E-07 6.728931362 0.359445496 TRS(ph)WDSSSPVDRPEPEAAS(ph)PTTR ddPTM_HeLa_A486_30min_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 T(0.132)RS(0.623)WDS(0.072)S(0.081)S(0.092)PVDRPEPEAAS(0.456)PT(0.286)T(0.257)R 92.589 0.006581 393710000 139580 136030 103040 49394 152820 121720 161390 148250 103760 164890 TRUE FALSE FALSE 129796.1628 125250.4874 142939.8475 114991.7282 133651.8906 106703.424 121008.515 114496.7113 112754.0003 123600.4707 1.050126767 1.013349598 1.156466854 0.930350245 1.081321857 0.863293022 0.979029564 0.926345269 0.912245719 1 16.91532471 -5.944880653 1.504558634 0.936736461 1.056048076 0.350029621 0.067513016 0.412901582 1.924730675 0.025239514 0.029479788 1.14E-06 5.944880653 0.119311616 TRS(ph)WDSSSPVDRPEPEAASPT(ph)TR ddPTM_HeLa_A486_30min_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 T(0.163)RS(0.782)WDS(0.024)S(0.028)S(0.003)PVDRPEPEAAS(0.183)PT(0.444)T(0.373)R 127.28 2.68E-06 438850000 196500 175350 134920 73360 223000 196090 212340 215950 154260 219980 TRUE FALSE FALSE 182726.3647 161454.6274 187164.6373 170785.7874 195029.2606 171898.4095 159210.2861 166782.8992 167631.381 164895.5762 1.10813382 0.979132559 1.135049476 1.035720857 1.182744044 1.042468291 0.965521876 1.011445565 1.016591135 1 17.33119317 -6.522901628 24.99167749 1.000007945 1.084872873 0.391065898 0.052753743 0.887074669 965235.1621 0.019407089 0.015189205 3.00E-07 6.522901628 0.084864928 TRS(ph)WDSSSPVDRPEPEAASPTTR ddPTM_HeLa_A485_30min_R1 2 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 T(0.192)RS(0.681)WDS(0.055)S(0.055)S(0.016)PVDRPEPEAASPTTR;T(0.013)RS(0.987)WDSSSPVDRPEPEAASPTTR ; 188.47 2.40E-21 1054400000 355338 339194 364103 463358 525445 386925 512650 565570 313833 666560 TRUE FALSE FALSE 434381.7122 378859.7877 498799.8513 488670.0743 473129.8509 407183.7947 403118.1395 426863.0707 376816.4045 500398.8591 0.868070948 0.75711561 0.996804533 0.976561128 0.945505455 0.813718471 0.805593642 0.853045651 0.753032101 1 18.93271897 -6.26935312 24.73943014 0.833425554 0.90903635 0.113367143 0.08608659 1061.386777 3318029.364 0.03080298 0.027655671 5.38E-07 6.26935312 0.075610796 TRSDIVSR ddPTM_HeLa_A486_30min_R1 1 TRSDIVSR 8 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 0 63.419 0.034788 12233000 13991 14745 12320 3539.8 15422 9822.9 14044 12953 9851.5 13244 FALSE FALSE TRUE 13010.30315 13576.5525 17090.63394 8240.833292 13487.62896 8611.05047 10530.04266 10003.88466 10705.43595 9927.616196 1.310516331 1.367554127 1.721524443 0.83009185 1.358596937 0.867383499 1.060681885 1.007682455 1.078349096 1 13.27723163 -5.266226324 24.99978124 1.037612582 1.456633883 0.589832217 0.16704149 271.6571742 1418728.489 0.044794419 0.068945243 5.42E-06 5.266226324 0.4190213 TRSWDSS(ph)SPVDRPEPEAASPT(ph)TR ddPTM_HeLa_A485_30min_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 T(0.003)RS(0.035)WDS(0.42)S(0.487)S(0.055)PVDRPEPEAAS(0.163)PT(0.449)T(0.388)R 113.97 0.00011541 563060000 172060 210440 176940 189860 227850 192080 250250 234700 157260 216840 TRUE FALSE FALSE 210334.1534 235049.1274 242397.4691 200231.571 205164.454 202137.0118 196782.0431 177139.457 188820.6395 162785.7786 1.2920917 1.443916842 1.489058019 1.230031104 1.260334015 1.241736308 1.208840507 1.08817526 1.159933264 1 17.31261514 -6.593397585 0.407825585 1.010215913 1.440442558 0.749239203 0.069901141 0.634267601 0.237706211 0.077628376 0.099320683 2.55E-07 6.593397585 0.430226645 TRSWDSSS(ph)PVDRPEPEAASPTTR ddPTM_HeLa_A485_30min_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 T(0.092)RS(0.163)WDS(0.163)S(0.163)S(0.297)PVDRPEPEAAS(0.052)PT(0.052)T(0.017)R 83.834 0.0023797 555570000 87135 119050 98074 102370 116070 113630 126340 133830 108590 123630 TRUE FALSE FALSE 106517.8801 132971.8619 134355.6538 107962.2139 104513.6633 119579.4911 99346.4269 101007.9827 130383.017 92811.31624 1.147682033 1.432711735 1.447621467 1.163244077 1.126087502 1.28841499 1.070412865 1.088315377 1.4048181 1 16.5020131 -5.281937583 23.29878501 1.166546192 1.35167573 0.279577764 0.131817482 404.2788834 459512.9307 0.03617181 0.053747486 5.22E-06 5.281937583 0.185129539 TRT(ph)PAS(ph)INATPANINLADLTR ddPTM_HeLa_A485_30min_R1 1 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85;Q7KZ85-2 SUPT6H Transcription elongation factor SPT6 2 0 T(0.415)RT(0.585)PAS(1)INATPANINLADLTR 116.28 3.96E-05 165420000 47591 55421 62307 50819 71532 54798 84269 85005 51079 76965 TRUE FALSE FALSE 58177.45376 61902.00385 85356.95211 53595.11329 64410.02292 57667.13855 66264.23974 64157.39047 61330.08678 57779.04194 1.006895438 1.071357395 1.477299541 0.927587435 1.114764467 0.998063253 1.14685598 1.110392078 1.061459047 1 15.81825866 TRTDS(ph)TSDGRPAWMR ddPTM_HeLa_A485_30min_R1 4 TRTDSTSDGRPAWMR 15 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 TRTDS(0.892)T(0.105)S(0.003)DGRPAWMR;TRTDS(0.468)T(0.468)S(0.063)DGRPAWMR;T(0.056)RT(0.056)DS(0.645)T(0.187)S(0.056)DGRPAWMR;T(0.001)RT(0.001)DS(0.959)T(0.031)S(0.007)DGRPAWMR ;;; 165.17 3.90E-12 7989000000 767300 1136710 969420 833740 1386910 1034850 1540310 1754120 922920 1177460 TRUE FALSE FALSE 937983.2378 1269638.346 1328048.799 879285.1051 1248824.371 1089033.146 1211210.185 1323919.32 1108141.578 883940.8915 1.061137964 1.436338514 1.502418105 0.994732921 1.412791718 1.232020327 1.370238889 1.497746436 1.253637646 1 19.75359038 -6.765610183 24.6660883 1.321884581 1.284754547 0 0.191096658 796.6925397 4711563.156 0.075949812 0.053344518 1.72E-07 6.765610183 -0.037130034 TRTDS(ph)TSDGRPAWMR ddPTM_HeLa_A486_30min_R1 4 TRTDSTSDGRPAWMR 15 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 TRT(0.001)DS(0.851)T(0.128)S(0.02)DGRPAWMR;TRT(0.002)DS(0.884)T(0.111)S(0.003)DGRPAWMR;TRTDS(0.727)T(0.24)S(0.033)DGRPAWMR;T(0.003)RT(0.002)DS(0.832)T(0.081)S(0.081)DGRPAWMR ;;; 158.44 5.87E-09 6847900000 1387900 1317360 1084410 505360 1508170 1168240 1526230 1638510 1009390 1495440 TRUE FALSE FALSE 1290615.377 1212967.596 1504322.594 1176503.619 1319001.255 1024114.427 1144351.111 1265457.041 1096884.738 1120972.09 1.15133587 1.082067615 1.341980417 1.049538726 1.176658426 0.913594937 1.020856024 1.12889255 0.978512086 1 20.09631893 -6.236587362 24.70452868 1.017207203 1.159907235 0.427533609 0.087613224 703.8994418 699722.4309 0.02866361 0.028651471 5.80E-07 6.236587362 0.142700032 TRTDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_A485_30min_R1 3 TRTDSYSAGQSVEILDGVELGEPAHKK 27 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.009)RT(0.005)DS(0.972)YS(0.014)AGQSVEILDGVELGEPAHKK;T(0.005)RT(0.02)DS(0.974)YS(0.001)AGQSVEILDGVELGEPAHKK;T(0.048)RT(0.048)DS(0.902)YS(0.003)AGQSVEILDGVELGEPAHKK ;; 292.73 3.10E-92 1643780000 937570 843090 444650 1001510 924670 1006110 1541470 1740280 668260 1443160 TRUE FALSE FALSE 1146129.212 941682.0416 609144.5384 1056219.955 832606.6081 1058788.364 1212122.342 1313473.601 802373.6524 1083406.771 1.057893713 0.86918604 0.562249152 0.974906179 0.76850785 0.977276857 1.118806319 1.212354986 0.740602397 1 20.04714358 -6.44192811 5.220479094 1.037480729 0.84017346 0.193163792 0.166050083 0.334572675 15.70933624 0.059866226 0.051938811 3.61E-07 6.44192811 -0.197307269 TRTDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_A486_30min_R1 2 TRTDSYSAGQSVEILDGVELGEPAHKK 27 2 P42345;B1AKP8;B1AKQ2 P42345 MTOR Serine/threonine-protein kinase mTOR 1 0 TRTDS(0.996)YS(0.004)AGQSVEILDGVELGEPAHKK;T(0.026)RT(0.032)DS(0.845)YS(0.095)AGQS(0.002)VEILDGVELGEPAHKK ; 375.49 3.04E-167 1335590000 1059090 665625 396074 452773 717130 933860 1181020 1068330 559377 1304070 TRUE FALSE FALSE 984853.2601 612878.4508 549444.46 1054078.426 627180.8684 818649.848 885516.3044 825094.5805 607864.2487 977522.3839 1.007499446 0.62697127 0.562078648 1.078316408 0.641602565 0.837474273 0.905878289 0.844067199 0.621841769 1 19.89877021 -5.227318506 24.99274176 0.834023691 0.721662037 0.082624557 0.170495245 1684.906704 1234152.663 0.044914549 0.077788722 5.92E-06 5.227318506 -0.112361653 TRTDST(ph)SDGRPAWMR ddPTM_HeLa_A485_30min_R1 1 TRTDSTSDGRPAWMR 15 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 T(0.001)RT(0.001)DS(0.351)T(0.541)S(0.107)DGRPAWMR 78.917 0.025307 650760000 91822 141210 115800 105790 137710 120320 168610 192310 124950 164470 TRUE FALSE FALSE 112247.4871 157723.2811 158639.2388 111569.0398 123999.1089 126619.7691 132585.0961 145145.671 150026.3189 123470.6558 0.909102542 1.277415108 1.284833532 0.903607736 1.004279989 1.025504953 1.073818675 1.175547906 1.215076715 1 16.91380868 -10.32552 13.57047771 1.000000006 1.098604981 0.045596411 0.132261216 3.85E-10 0 0.133270361 0.03232281 4.73E-11 10.32552 0.098604975 TRTFS(ph)ATVR ddPTM_HeLa_A485_30min_R1 9 TRTFSATVR 9 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 T(0.001)RTFS(0.985)AT(0.014)VR;TRTFS(0.976)AT(0.024)VR;TRTFS(1)ATVR;TRT(0.004)FS(0.985)AT(0.011)VR;TRTFS(0.997)AT(0.003)VR;TRTFS(0.998)AT(0.002)VR;TRTFS(0.999)AT(0.001)VR;TRTFS(0.999)ATVR;TRT(0.001)FS(0.999)ATVR ;;;;;;;; 156.14 1.77E-05 35402810000 1475678 3170122 2348599 1031912 3053381 2924407 3809100 5422100 1873123 1488664 TRUE FALSE FALSE 1803937.48 3540840.192 3217443.503 1088282.74 2749375.667 3077524.429 2995254.668 4092321.473 2249041.605 1117567.462 1.614164283 3.168345816 2.878970276 0.973796014 2.460142909 2.753770608 2.680155579 3.661811581 2.012443707 1 20.09193049 -5.990557149 24.97842945 2.604468262 2.211692996 0 0.855609679 776.8665427 2054967.975 0.263323725 0.298216256 1.02E-06 5.990557149 -0.392775266 TRTFS(ph)ATVR ddPTM_HeLa_A486_30min_R1 7 TRTFSATVR 9 1 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 CARHSP1 Calcium-regulated heat stable protein 1 1 0 TRTFS(1)ATVR;TRTFS(0.998)AT(0.002)VR;T(0.003)RT(0.093)FS(0.9)AT(0.004)VR;T(0.001)RT(0.299)FS(0.699)ATVR;TRT(0.001)FS(0.992)AT(0.007)VR;TRTFS(0.999)AT(0.001)VR;TRTFS(0.996)AT(0.004)VR ;;;;;; 137.4 8.07E-05 7929800000 2426341 1626736 1407920 774316 2326531 1344019 2128652 2314274 1063582 2395579 TRUE FALSE FALSE 2256267.026 1497827.515 1953104.329 1802646.78 2034715.788 1178207.601 1596040.755 1787364.33 1155774.144 1795710.426 1.256475985 0.834114172 1.087649936 1.003862735 1.133097942 0.656123384 0.888807422 0.995352204 0.643630581 1 20.77612329 -6.24353044 24.99401707 0.839743759 1.048401621 0.36117587 0.149797134 974.1196491 1359498.677 0.047095244 0.047005636 5.71E-07 6.24353044 0.208657861 TRTYS(ph)ATAR ddPTM_HeLa_A485_30min_R1 2 TRTYSATAR 9 1 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 T(0.003)RT(0.003)Y(0.004)S(0.933)AT(0.057)AR;T(0.012)RT(0.008)Y(0.002)S(0.769)AT(0.209)AR ; 61.235 0.014186 466330000 128379 311670 213194 103033 286110 242100 354690 469990 169838 168370 TRUE FALSE FALSE 156936.4656 348117.0953 292063.3323 108661.4319 257623.8838 254775.9816 278907.5839 354724.2156 203922.9288 126398.4576 1.241601113 2.754124551 2.310655825 0.859673717 2.038188508 2.015657362 2.206574267 2.80639671 1.613333996 1 16.94761933 -5.95749126 24.99931563 2.055156633 1.841301483 0 0.653772512 753.2713145 442994.4644 0.20368485 0.23095677 1.10E-06 5.95749126 -0.21385515 TRTYS(ph)ATAR ddPTM_HeLa_A486_30min_R1 2 TRTYSATAR 9 1 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 T(0.009)RT(0.014)Y(0.001)S(0.929)AT(0.047)AR;TRT(0.001)YS(0.975)AT(0.022)AR ; 66.023 0.0094589 188994000 169607 140198 120483 61083 181817 92602 151790 180190 97972 160240 TRUE FALSE FALSE 157718.4252 129088.1999 167137.2442 142204.311 159011.8165 81177.70675 113810.5365 139164.6705 106464.2918 120114.861 1.313063378 1.074706317 1.39147848 1.183902722 1.323831332 0.675833998 0.947514201 1.158596608 0.886354036 1 16.87405513 -6.235196963 24.99079099 0.944437915 1.250613033 0.580214913 0.137469962 582.3482356 554573.6444 0.045265158 0.045251739 5.82E-07 6.235196963 0.306175118 TRVVHLSLRPIFLQPGRPLTR ddPTM_HeLa_A485_30min_R1 1 TRVVHLSLRPIFLQPGRPLTR 21 3 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 0 54.658 0.020979 3760300 13246 29607 17297 14191 17016 29565 41267 58195 10067 21688 FALSE FALSE TRUE 16192.527 33069.2811 23695.88009 14966.2184 15321.82729 31112.97768 32449.96833 43922.585 12087.35456 16281.58074 0.9945304 2.031085411 1.455379577 0.919211632 0.941052809 1.91093102 1.993047779 2.697685545 0.742394412 1 13.99095315 -6.280785362 24.42675698 1.795181881 1.301636422 0.082005368 0.594479071 1280.108282 1616293.166 0.208265103 0.183974581 5.24E-07 6.280785362 -0.493545459 TS(ph)DANETEDHLESLICK ddPTM_HeLa_A486_30min_R1 2 TSDANETEDHLESLICK 17 0 Q09161;F2Z2T1 Q09161 NCBP1 Nuclear cap-binding protein subunit 1 1 0 T(0.167)S(0.833)DANETEDHLESLICK;T(0.038)S(0.962)DANETEDHLESLICK ; 338.38 5.72E-92 676780000 586510 873760 451480 285820 808990 852040 1196950 1103010 654590 960500 TRUE FALSE FALSE 545398.6777 804520.0754 626305.1471 665403.4045 707518.9307 746923.9677 897460.45 851878.7015 711330.3883 719984.5482 0.75751442 1.117412974 0.869886928 0.924191229 0.982686271 1.037416663 1.246499598 1.183190256 0.987980075 1 19.45760642 -6.313860862 2.638317158 1.120221507 0.932382077 0.349259572 0.111277562 0.305367812 4.193428288 0.04153049 0.037160627 4.85E-07 6.313860862 -0.18783943 TS(ph)DVGGYYYEK ddPTM_HeLa_A485_30min_R1 6 TSDVGGYYYEK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.034)S(0.966)DVGGYYYEK;T(0.056)S(0.944)DVGGYYYEK;T(0.047)S(0.953)DVGGYYYEK;T(0.182)S(0.818)DVGGYYYEK;T(0.162)S(0.838)DVGGYYYEK;T(0.205)S(0.795)DVGGYYYEK ;;;;; 268.95 3.91E-28 3092280000 3326740 2729740 2019840 4632010 3970510 2736830 4302580 3899420 2547240 5558940 TRUE FALSE FALSE 4066761.836 3048959.347 2767062.869 4885044.977 3575192.083 2880126.187 3383298.634 2943081.131 3058447.703 4173198.563 0.974495168 0.730604907 0.663055646 1.170575736 0.856703085 0.69014837 0.810720742 0.705233908 0.732878548 1 21.99272214 -6.025408809 24.3273062 0.771097243 0.877320812 0.079705188 0.15139164 1344.184768 1286968.332 0.05042094 0.050644243 9.43E-07 6.025408809 0.106223569 TS(ph)DVGGYYYEK ddPTM_HeLa_A486_30min_R1 5 TSDVGGYYYEK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.048)S(0.952)DVGGYYYEK;T(0.047)S(0.953)DVGGYYYEK;T(0.024)S(0.976)DVGGYYYEK;T(0.062)S(0.938)DVGGYYYEK;T(0.194)S(0.806)DVGGYYYEK ;;;; 229.75 2.33E-18 2610490000 4606160 5045380 2360180 2184333 4264000 5317900 6460740 5652510 3974930 6528600 TRUE FALSE FALSE 4283291.97 4645565.714 3274104.904 5085237.614 3729169.36 4661831.566 4844194.517 4365556.866 4319480.133 4893796.066 0.87524938 0.949276523 0.669031741 1.039119233 0.762019771 0.952600293 0.989864402 0.892059417 0.882644081 1 22.22252255 TS(ph)FGSLTDSSEEALEGMVR ddPTM_HeLa_A486_30min_R1 1 TSFGSLTDSSEEALEGMVR 19 0 G3V160;Q969H4-2;Q969H4 G3V160 CNKSR1 Connector enhancer of kinase suppressor of ras 1 1 0 T(0.258)S(0.74)FGS(0.002)LTDSSEEALEGMVR 87.287 0.00072175 7410200 13562 14776 11811 7686.8 16392 13085 17249 17026 9656.3 18005 TRUE FALSE FALSE 12611.37383 13605.09595 16384.53551 17895.25887 14335.96251 11470.70574 12933.11776 13149.55147 10493.31586 13496.43081 0.934422887 1.008051398 1.213990257 1.325925285 1.062203979 0.849906609 0.958262073 0.97429844 0.777488212 1 13.72029031 -6.09125632 5.513302722 0.915039915 1.127669802 0.423967692 0.116001173 0.238497164 11.28258566 0.04149649 0.04182388 8.10E-07 6.09125632 0.212629887 TS(ph)FSFQK ddPTM_HeLa_A485_30min_R1 1 TSFSFQK 7 0 H0Y7F8;Q9BPZ7-4;Q9BPZ7-3;Q9BPZ7-2;Q9BPZ7 H0Y7F8 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 1 0 T(0.043)S(0.956)FSFQK 98.044 0.0038035 0 511800 411340 331290 651440 530160 345850 568990 515660 310380 769350 TRUE FALSE FALSE 625648.1443 459442.6348 453847.9571 687026.5177 477375.4089 363958.1712 447420.6383 389193.5765 372670.419 577565.2038 1.083251103 0.795481846 0.785795187 1.189522002 0.826530763 0.63015945 0.774666887 0.673852188 0.64524389 1 19.1396243 -5.996703285 24.99953131 0.726498679 0.947467521 0.318618714 0.149011252 117.2933982 889440.0344 0.045281168 0.051086958 1.01E-06 5.996703285 0.220968842 TS(ph)FSFQK ddPTM_HeLa_A486_30min_R1 2 TSFSFQK 7 0 H0Y7F8;Q9BPZ7-4;Q9BPZ7-3;Q9BPZ7-2;Q9BPZ7 H0Y7F8 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 1 0 T(0.254)S(0.746)FSFQK;T(0.266)S(0.734)FSFQK ; 103.55 0.0037483 183779000 954020 903100 478860 430060 707960 949230 1046280 1084440 718850 1003770 TRUE FALSE FALSE 887148.1246 831535.067 664287.4163 1001201.414 619161.0553 832123.6537 784489.6776 837536.6852 781160.4968 752419.4586 1.179060582 1.105148275 0.88286847 1.330642639 0.822893465 1.105930534 1.042622793 1.113124701 1.038198159 1 19.52117763 -4.523688524 24.99133822 1.04706911 1.160582563 0.097730798 0.129658755 53.15196516 1640446.119 0.030689347 0.082779794 2.99E-05 4.523688524 0.113513453 TS(ph)LSSLR ddPTM_HeLa_A486_30min_R1 1 TSLSSLR 7 0 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 0 T(0.241)S(0.754)LS(0.006)SLR 100.98 0.0032993 0 331910 307040 237220 104870 361590 316270 343300 311480 297240 343190 TRUE FALSE FALSE 308644.823 282709.0322 329077.937 244142.6598 316236.0105 277251.823 257402.7089 240562.8036 323005.0025 257252.9902 1.199771566 1.098953338 1.279199658 0.949037209 1.229280213 1.077739943 1.00058199 0.935121506 1.255592801 1 17.97282832 -5.673495277 0.746500084 1.047338678 1.181792443 0.139717833 0.114832338 1.556574392 1.830280279 0.063811291 0.126122838 2.12E-06 5.673495277 0.134453765 TS(ph)NERPGSGQGQGR ddPTM_HeLa_A485_30min_R1 1 TSNERPGSGQGQGR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 T(0.169)S(0.831)NERPGSGQGQGR 63.145 0.010759 164830000 47538 59593 61203 76481 77348 53546 68912 84223 56573 93015 TRUE FALSE FALSE 58112.6641 66561.88296 83844.53657 80658.96337 69646.96153 56349.58576 54188.38824 63567.17719 67926.68218 69828.07231 0.832224952 0.953225268 1.200728214 1.155107977 0.997406333 0.806976104 0.776025837 0.910338422 0.972770405 1 16.09151953 -6.07004075 6.333032701 0.881494868 1.045468905 0.257989646 0.114043223 0.316464053 22.99585156 0.040974821 0.041309822 8.51E-07 6.07004075 0.163974037 TS(ph)NERPGSGQGQGR ddPTM_HeLa_A486_30min_R1 1 TSNERPGSGQGQGR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 T(0.137)S(0.863)NERPGSGQGQGR 68.567 0.0054742 153530000 49937 54494 44543 24828 54563 53718 55625 49962 53522 68816 TRUE FALSE FALSE 46436.67417 50175.69698 61791.2425 57800.83874 47719.19976 47090.81932 41707.03666 38586.74326 58161.33005 51584.02568 0.900214234 0.972698356 1.197875538 1.120518183 0.925077078 0.912895392 0.808526208 0.748036679 1.127506612 1 15.65463675 -5.880737813 6.177090814 0.899243194 1.052582422 0.197988289 0.122061784 0.310028811 15.5708945 0.039399054 0.044897564 1.32E-06 5.880737813 0.153339227 TS(ph)NRYSPESQAQSVHHQRPGSRVS(ph)PENLVDK ddPTM_HeLa_A486_30min_R1 1 TSNRYSPESQAQSVHHQRPGSRVSPENLVDK 31 3 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 2 0 T(0.296)S(0.32)NRY(0.18)S(0.204)PES(0.054)QAQS(0.068)VHHQRPGS(0.169)RVS(0.71)PENLVDK 74.258 0.00069326 269780000 67314 54725 46854 9892.6 103150 62745 97942 96559 51396 48622 TRUE FALSE FALSE 62595.63621 50388.39169 64997.12359 23030.47274 90211.96516 55004.15984 73435.87568 74574.62357 55851.04666 36446.73472 1.717455259 1.382521427 1.783345589 0.631893993 2.475172765 1.509165643 2.014882162 2.04612633 1.532401931 1 15.15350195 -5.771624185 24.99964548 1.815170804 1.407965303 0.131610217 0.469740183 387.7805392 951844.2225 0.13682599 0.15687148 1.69E-06 5.771624185 -0.407205501 TS(ph)PAACIWPR ddPTM_HeLa_A486_30min_R1 1 TSPAACIWPR 10 0 Q6P387-2;Q6P387 Q6P387-2 C16orf46 Uncharacterized protein C16orf46 1 0 T(0.39)S(0.61)PAACIWPR 62.005 0.026131 204780000 156000 185530 142330 65399 198950 167060 185050 210570 143910 179970 TRUE FALSE FALSE 145065.2056 170827.9271 197443.9877 152252.1771 173995.8359 146449.8357 138748.5327 162627.8077 156384.2347 134904.3406 1.075319037 1.26628933 1.463585136 1.128593612 1.289771961 1.085582829 1.028495689 1.205504634 1.15922315 1 17.04157724 -6.266130241 24.45863664 1.104401195 1.251619186 0.308316635 0.110932498 397.8212211 2074271.462 0.039073098 0.035608572 5.42E-07 6.266130241 0.147217991 TS(ph)PAKQQAPPVR ddPTM_HeLa_A485_30min_R1 1 TSPAKQQAPPVR 12 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 T(0.409)S(0.591)PAKQQAPPVR 162.37 1.39E-10 843100000 141380 451300 184840 105380 526650 596850 1038600 2127600 215690 248170 TRUE FALSE FALSE 172829.4932 504075.6092 253220.0078 111136.6426 474214.8768 628100.1431 816694.6254 1605802.764 258977.0046 186305.7862 0.92766573 2.705635823 1.359163411 0.596528132 2.54535775 3.371339966 4.383624588 8.619178162 1.390064205 1 17.50731296 -6.287364566 2.183527571 4.421233722 1.511165156 0.203460863 2.0413348 0.408548451 3.826309606 0.788517424 0.71358384 5.16E-07 6.287364566 -2.910068565 TS(ph)PAKQQAPPVR ddPTM_HeLa_A486_30min_R1 3 TSPAKQQAPPVR 12 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 T(0.14)S(0.86)PAKQQAPPVR;T(0.231)S(0.769)PAKQQAPPVR;T(0.009)S(0.991)PAKQQAPPVR ;; 181.26 3.79E-13 879190000 1897900 706110 583550 1121370 1986280 735640 1908620 2429330 469370 2427690 TRUE FALSE FALSE 1764867.011 650155.272 809516.188 2610606.031 1737142.241 644884.2162 1431063.089 1876224.591 510055.3695 1819780.622 0.969824049 0.357271236 0.444842734 1.434571837 0.954588822 0.354374702 0.78639319 1.031016908 0.280283988 1 20.79533311 TS(ph)PAPWK ddPTM_HeLa_A485_30min_R1 4 TSPAPWK 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.024)S(0.976)PAPWK;T(0.011)S(0.989)PAPWK;T(0.456)S(0.544)PAPWK;T(0.127)S(0.873)PAPWK ;;; 135 0.00058101 1809670000 5814130 3503740 3237120 10547600 5482820 3271460 5491840 3320360 4217110 12294400 TRUE FALSE FALSE 7107463.16 3913471.915 4434665.396 11123788.68 4936931.189 3442748.587 4318463.52 2506036.504 5063445.295 9229632.342 0.77007002 0.42401168 0.480481262 1.205225546 0.534900092 0.373010371 0.467891175 0.271520729 0.548607475 1 23.13784175 -10.20774387 4.843726028 1.000006076 0.558358704 0.217987043 0.247554481 0.000180684 2.96E-05 0.252338076 0.061192109 6.20E-11 10.20774387 -0.441647372 TS(ph)PAPWK ddPTM_HeLa_A486_30min_R1 2 TSPAPWK 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.019)S(0.981)PAPWK;T(0.341)S(0.659)PAPWK ; 121.09 0.0019685 1063700000 5381900 7546900 3224100 2648400 5089600 8174000 8543400 7509100 6219400 8709500 TRUE FALSE FALSE 5004656.602 6948856.159 4472557.864 6165609.043 4451214.909 7165574.987 6405750.957 5799441.853 6758502.6 6528584.511 0.766576062 1.064374084 0.685073136 0.944402119 0.681803981 1.097569462 0.98118527 0.888315353 1.035217142 1 22.6383388 -6.274055341 24.97647193 0.992272636 0.840029853 0.343276381 0.118147286 983.8085004 1947691.582 0.03955045 0.035109548 5.32E-07 6.274055341 -0.152242783 TS(ph)PAPWKR ddPTM_HeLa_A485_30min_R1 2 TSPAPWKR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.149)S(0.851)PAPWKR;T(0.168)S(0.832)PAPWKR ; 108.15 0.00076961 2380540000 2112920 2200980 1590870 2876260 2721230 1904160 3183800 2772370 1733560 3641100 TRUE FALSE FALSE 2582931.765 2458365.465 2179399.015 3033382.801 2450294.786 2003858.873 2503555.121 2092441.911 2081469.591 2733440.779 0.944937891 0.899366646 0.797309761 1.109730572 0.896414074 0.733090282 0.915898797 0.765497437 0.761483331 1 21.38228669 -6.010982775 24.8880189 0.824378333 0.934803468 0.178579424 0.102877452 818.3063577 1854364.085 0.03219292 0.03418412 9.75E-07 6.010982775 0.110425135 TS(ph)PAPWKR ddPTM_HeLa_A486_30min_R1 1 TSPAPWKR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.056)S(0.944)PAPWKR 100.57 0.0012569 1061100000 824030 904290 476090 416040 789350 841610 1127500 1090900 670950 1195100 TRUE FALSE FALSE 766269.7523 832630.767 660444.7981 968562.1455 690342.3626 737780.7151 845387.5745 842525.8842 729108.4862 895839.1812 0.855365303 0.929442231 0.737235892 1.081178593 0.7706097 0.823563794 0.943682295 0.940487871 0.81388323 1 19.77288024 -10.90828608 2.373389657 1.072821276 0.879780796 0.129017104 0.095463301 26223009.48 13076753.56 10637380.17 0.023129105 1.24E-11 10.90828608 -0.19304048 TS(ph)PCQS(ph)PTISEGPVPSLPIRPSR ddPTM_HeLa_A485_30min_R1 1 TSPCQSPTISEGPVPSLPIRPSR 23 1 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 2 0 T(0.463)S(0.537)PCQS(0.864)PT(0.136)IS(0.001)EGPVPSLPIRPSR 100.27 0.00089812 110300000 44188 39053 43104 58546 53588 47428 74756 49462 45204 83367 TRUE FALSE FALSE 54017.46815 43619.90863 59049.96331 61744.21973 48252.59056 49911.25674 58783.7699 37331.36695 54276.02816 62585.14116 0.86310372 0.696969086 0.943514103 0.986563561 0.77099116 0.797493715 0.939260802 0.596489299 0.867235052 1 15.93353256 TS(ph)PCQS(ph)PTISEGPVPSLPIRPSR ddPTM_HeLa_A486_30min_R1 1 TSPCQSPTISEGPVPSLPIRPSR 23 1 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 2 0 T(0.464)S(0.537)PCQS(0.985)PT(0.012)IS(0.002)EGPVPSLPIRPSR 86.449 0.0028416 76304000 60759 55985 32660 20929 42526 60374 61075 56878 45990 67214 TRUE FALSE FALSE 56500.10786 51548.54471 45306.82667 48723.76969 37191.99254 52925.66972 45793.38901 43928.12104 49976.45023 50383.17691 1.121408203 1.023130098 0.899245134 0.96706426 0.738182759 1.05046313 0.908902372 0.871880729 0.991927332 1 15.62065447 -4.497916405 2.666460351 0.921938108 1.123269824 0.355564821 0.081899413 0.321830272 4.026081085 0.020686742 0.112447896 3.18E-05 4.497916405 0.201331716 TS(ph)PCQSPTISEGPVPSLPIRPSR ddPTM_HeLa_A486_30min_R1 1 TSPCQSPTISEGPVPSLPIRPSR 23 1 A0A0D9SGJ6;J3KQV8;O43426;J3KPK1;C9JFZ1;O43426-4;O43426-2 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 T(0.152)S(0.847)PCQSPTISEGPVPSLPIRPSR 100.27 0.00039591 403650000 18443 16562 10789 7466.2 12762 13317 11793 14189 9575.5 19092 TRUE FALSE FALSE 17150.24094 15249.5668 14966.78974 17381.69092 11161.27096 11674.08394 8842.266666 10958.47444 10405.51205 14311.23893 1.198375698 1.065565803 1.045806713 1.2145483 0.779895508 0.815728393 0.61785473 0.765725071 0.727086739 1 13.80486095 -5.772532206 24.70110763 0.765908878 1.120304421 0.732502983 0.102189415 89.4943627 199282.1772 0.03051084 0.034926919 1.69E-06 5.772532206 0.354395543 TS(ph)PDSLR ddPTM_HeLa_A485_30min_R1 1 TSPDSLR 7 0 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.031)S(0.969)PDSLR 178.65 0.00071361 396000000 578020 572940 547000 762580 736730 481470 760430 628170 548930 1104900 TRUE FALSE FALSE 706598.5549 639940.3491 749358.0626 804237.8144 663378.5744 506679.0247 597957.9184 474110.3226 659095.2159 829468.7642 0.851868793 0.771506266 0.903419267 0.969581796 0.799763177 0.610847625 0.720892629 0.571583094 0.794599199 1 19.66182813 -6.003945448 24.53672204 0.710936334 0.870837444 0.20350976 0.118798988 167.0875175 1039129.217 0.035730905 0.03959995 9.91E-07 6.003945448 0.15990111 TS(ph)PDSLR ddPTM_HeLa_A486_30min_R1 1 TSPDSLR 7 0 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.196)S(0.804)PDSLR 199.29 0.00019564 595980000 957060 1134100 729250 397300 1026000 1118400 1208700 1130900 957830 1363000 TRUE FALSE FALSE 889975.0363 1044229.786 1011635.13 924934.4784 897309.5129 980423.1791 906270.4757 873418.7574 1040855.476 1021695.928 0.871076229 1.022055346 0.990152845 0.9052933 0.878254956 0.959603686 0.887025631 0.854871526 1.01875269 1 19.96253446 -1.117410053 17.38972925 0.934958776 0.010779642 0 0.062752887 0 0 0.014239552 0 0.076311492 1.117410053 -0.924179134 TS(ph)PDSLRR ddPTM_HeLa_A485_30min_R1 3 TSPDSLRR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.412)S(0.588)PDSLRR;T(0.379)S(0.621)PDSLRR;T(0.412)S(0.588)PDSLRR ;; 123.75 0.00037117 1482480000 669940 766970 791150 873250 1038400 784300 984170 916970 743980 1122110 TRUE FALSE FALSE 818965.8417 856660.4697 1083829.307 920953.4363 935013.25 825364.7352 773894.0396 692081.6697 893289.9618 842388.6279 0.972194798 1.016942111 1.286614363 1.093264327 1.109954739 0.979790928 0.918690037 0.821570528 1.060425001 1 19.68412643 -6.370327271 3.463398733 0.936459354 1.10234944 0.345280881 0.095661915 0.272293399 6.071678784 0.036897149 0.032135165 4.26E-07 6.370327271 0.165890086 TS(ph)PDTLR ddPTM_HeLa_A485_30min_R1 6 TSPDTLR 7 0 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.13)S(0.87)PDTLR;T(0.059)S(0.941)PDTLR;T(0.274)S(0.726)PDTLR;T(0.337)S(0.663)PDTLR;T(0.185)S(0.815)PDTLR;T(0.184)S(0.816)PDTLR ;;;;; 199.8 0.00018943 53000200000 53004500 46896200 43388900 77407200 62519600 40280060 61248200 44656600 45430500 95875100 TRUE FALSE FALSE 64795168.16 52380302.65 59440259.67 81635759.33 56294929.1 42389061.66 48162021.72 33704498.83 54547984.64 71975202.02 0.90024295 0.727754854 0.825843596 1.134220635 0.782143398 0.588939808 0.669147434 0.468279322 0.757871921 1 26.1009966 -6.001569526 24.94505474 0.664512505 0.889634285 0.246387034 0.159911615 73.27418826 1164607.055 0.049183241 0.054989312 9.96E-07 6.001569526 0.22512178 TS(ph)PDTLR ddPTM_HeLa_A486_30min_R1 5 TSPDTLR 7 0 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.153)S(0.847)PDTLR;T(0.13)S(0.87)PDTLR;T(0.165)S(0.835)PDTLR;T(0.379)S(0.621)PDTLR;T(0.025)S(0.975)PDTLR ;;;; 201.3 0.00017144 61690000000 82251500 90838100 55953200 31430660 75178500 91229200 100509800 91576800 75984300 108652400 TRUE FALSE FALSE 76486094.6 83639758.13 77619777.52 73172164.9 65748911.52 79974268.85 75361184.96 70726761.75 82570680.3 81445131.83 0.939111926 1.026946071 0.953031517 0.898422819 0.807278594 0.981940443 0.925300055 0.868397658 1.013819715 1 26.27932513 -10.08729131 13.74616099 0.999999998 0.932472435 0.086992677 0.062806357 0 0 0.062632747 0.015190673 8.18E-11 10.08729131 -0.067527563 TS(ph)PDTLRR ddPTM_HeLa_A485_30min_R1 1 TSPDTLRR 8 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.226)S(0.774)PDTLRR 131.09 0.00031693 1121200000 167340 189430 174840 240760 249880 176880 259080 214590 166660 309180 TRUE FALSE FALSE 204564.2057 211582.1907 239520.5917 253912.1092 225001.0698 186141.1633 203725.4415 161961.466 200107.1333 232107.116 0.881335347 0.911571322 1.03193989 1.093943665 0.969384626 0.801962329 0.877721653 0.697787594 0.862132694 1 17.82443123 -6.222015001 7.085164298 0.830914118 0.98397635 0.333981573 0.089814531 0.249853042 37.32289722 0.030438497 0.030147007 6.00E-07 6.222015001 0.153062232 TS(ph)PENVQDR ddPTM_HeLa_A485_30min_R1 5 TSPENVQDR 9 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 T(0.152)S(0.848)PENVQDR;T(0.012)S(0.988)PENVQDR;T(0.272)S(0.728)PENVQDR;T(0.22)S(0.78)PENVQDR;T(0.152)S(0.848)PENVQDR ;;;; 202.2 8.00E-10 5943490000 3752570 3737030 3559240 5073270 4453020 3454210 4673340 3603310 3424950 6764390 TRUE FALSE FALSE 4587316.25 4174043.151 4875950.988 5350409.894 4009661.693 3635067.094 3674842.731 2719592.573 4112306.049 5078152.062 0.903343617 0.82196104 0.960182155 1.053613564 0.78959071 0.715824782 0.723657481 0.535547683 0.809803645 1 22.27587217 -5.954346702 7.684265752 0.728683166 0.928453931 0.317267737 0.120976456 0.242986062 34.71003043 0.037101331 0.041998971 1.11E-06 5.954346702 0.199770765 TS(ph)PENVQDR ddPTM_HeLa_A486_30min_R1 3 TSPENVQDR 9 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 T(0.013)S(0.987)PENVQDR;T(0.145)S(0.855)PENVQDR;T(0.158)S(0.842)PENVQDR ;; 209.77 3.47E-10 3796790000 2033780 2193380 1289750 761300 1833590 2045270 2319010 2179800 1762060 2648350 TRUE FALSE FALSE 1891222.524 2019568.581 1789175.741 1772344.874 1603604.045 1792945.382 1738769.17 1683507.125 1914796.78 1985185.922 0.952667709 1.017319616 0.901263565 0.892785333 0.80778532 0.903162451 0.875872205 0.848034991 0.964542796 1 20.9208427 -4.846371721 6.262912409 0.888825821 0.98441844 0.276056797 0.053733085 0.206272279 12.04187184 0.013432258 0.028725403 1.42E-05 4.846371721 0.095592619 TS(ph)PGGRT(ph)SPEAR ddPTM_HeLa_A486_30min_R1 1 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 T(0.165)S(0.835)PGGRT(0.908)S(0.092)PEAR 108.66 0.007826 85526000 140910 153800 123290 66142 176720 166120 190040 205040 142220 190580 TRUE FALSE FALSE 131032.9367 141612.3279 171031.1898 153981.9186 154554.1298 145625.8034 142489.982 158356.868 154547.7441 142857.5275 0.917228087 0.991283626 1.197215105 1.077870528 1.081875995 1.019377879 0.997427188 1.108495091 1.081831296 1 17.12421753 -4.529419664 24.97870373 1.072194163 0.935741925 0.435575681 0.055768492 122.4185357 467497.646 0.014579797 0.038781789 2.96E-05 4.529419664 -0.136452238 TS(ph)PGGRTS(ph)PEAR ddPTM_HeLa_A485_30min_R1 1 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 T(0.297)S(0.703)PGGRT(0.002)S(0.998)PEAR 151.49 4.60E-07 49102000 71709 69752 65449 94863 107340 73892 106670 86452 67319 124950 TRUE FALSE FALSE 87660.41966 77908.88964 89661.30866 100045.1255 96652.85271 77760.87086 83879.08309 65249.51145 80829.30581 93802.26453 0.93452349 0.830565126 0.955854415 1.066553414 1.030389332 0.828987139 0.894211707 0.695606996 0.861698875 1 16.51733513 -6.28000885 24.39709198 0.839458288 0.961479461 0.246983234 0.091517758 824.6224776 1083408.331 0.033600958 0.02969062 5.25E-07 6.28000885 0.122021172 TS(ph)PGGRTS(ph)PEAR ddPTM_HeLa_A486_30min_R1 1 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 2 0 T(0.129)S(0.86)PGGRT(0.14)S(0.871)PEAR 67.115 0.01424 0 20576 24897 17900 10451 24346 28918 30320 29704 20391 27037 TRUE FALSE FALSE 19133.72865 22924.07105 24831.35938 24330.45616 21292.29766 25350.39118 22733.61531 22941.04763 22158.5083 20266.75922 0.944094142 1.131116761 1.225225953 1.200510447 1.050601995 1.250835958 1.121719317 1.131954418 1.093342456 1 14.30682779 -8.154059591 1.814942027 1.000149518 1.13909545 0.18297037 0.083607037 1.000420948 6.494836358 0.08010908 0.022617796 7.01E-09 8.154059591 0.138945932 TS(ph)PGRPLGTTK ddPTM_HeLa_A485_30min_R1 2 TSPGRPLGTTK 11 1 Q7Z6I8;Q7Z6I8-2 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 1 0 T(0.156)S(0.844)PGRPLGTTK;T(0.113)S(0.887)PGRPLGTTK ; 75.462 0.0048938 671620000 914840 646530 565820 1455240 1079520 736540 1234500 914060 770210 1973880 TRUE FALSE FALSE 1118343.002 722136.0594 775140.3637 1534736.076 972039.1984 775104.0955 970738.9901 689885.3518 924784.0822 1481828.043 0.754704979 0.48732784 0.523097378 1.03570457 0.655973008 0.523072903 0.655095573 0.465563704 0.624083264 1 20.49894661 -11.31341084 2.265884075 2.883339045 0.632932485 0.321393446 0.15858757 9956242.252 1185983.129 96281366.89 0.040818161 4.86E-12 11.31341084 -2.25040656 TS(ph)PGRPLGTTK ddPTM_HeLa_A486_30min_R1 2 TSPGRPLGTTK 11 1 Q7Z6I8;Q7Z6I8-2 Q7Z6I8 C5orf24 UPF0461 protein C5orf24 1 0 T(0.016)S(0.984)PGRPLGTTK;T(0.025)S(0.975)PGRPLGTTK ; 101.43 0.00057952 645750000 1289070 1262460 613110 560780 1085690 1411310 1678400 1497590 1077310 1660330 TRUE FALSE FALSE 1198712.85 1162418.072 850522.6117 1305524.18 949512.6365 1237196.921 1258446.568 1156621.449 1170692.098 1244572.561 0.96315224 0.933989796 0.683385315 1.048973938 0.762922682 0.994073757 1.011147608 0.929332275 0.940637882 1 20.24721891 TS(ph)PGRVDLPGSSTTLTK ddPTM_HeLa_A485_30min_R1 1 TSPGRVDLPGSSTTLTK 17 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 T(0.038)S(0.962)PGRVDLPGSSTTLTK 235.45 4.46E-41 577510000 222470 210510 181620 346000 285850 239100 426830 339230 227000 498410 TRUE FALSE FALSE 271957.684 235127.3133 248808.7958 364901.1039 257389.7703 251618.9063 335634.2836 256033.3106 272556.8178 374165.5596 0.726837832 0.628404478 0.664969796 0.975239689 0.687903426 0.672480136 0.897020784 0.684278133 0.728439085 1 18.51331724 -14 0.338885301 3.754694458 0.732532717 0.355915838 0.104426405 456.4120387 3.870106552 909.3978478 0.087092276 1.00E-14 14 -3.022161741 TS(ph)PGRVDLPGSSTTLTK ddPTM_HeLa_A486_30min_R1 2 TSPGRVDLPGSSTTLTK 17 1 O94875-11;O94875-9;O94875;O94875-7;O94875-8;H7BZK1;O94875-2;H7C1R7;O94875-12;H7BXR3;O94875-5;O94875-3;O94875-4;O94875-10;H7BZX1 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 T(0.332)S(0.667)PGRVDLPGS(0.001)STTLTK;T(0.166)S(0.833)PGRVDLPGSST(0.001)TLTK ; 201.8 6.08E-24 777810000 1773180 1484300 764940 729660 1513010 1754050 2202820 2082850 1404740 2319880 TRUE FALSE FALSE 1648889.239 1366678.662 1061145.254 1698685.355 1323234.178 1537653.145 1651651.137 1608630.523 1526503.994 1738966.948 0.948200448 0.785914111 0.610215884 0.976835906 0.760931183 0.884233681 0.949788688 0.92504951 0.877822316 1 20.72979908 -6.489129732 4.938246991 0.930736348 0.812378325 0.250885433 0.098876354 0.298235988 18.34389103 0.036573691 0.030757218 3.24E-07 6.489129732 -0.118358023 TS(ph)PHWK ddPTM_HeLa_A485_30min_R1 1 TSPHWK 6 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 T(0.362)S(0.638)PHWK 84.244 0.013528 114890000 192690 157980 138890 270420 227250 157740 242320 187940 176350 365470 TRUE FALSE FALSE 235553.2257 176454.3868 190271.1907 285192.3599 204624.1921 165999.0225 190546.3524 141847.4203 211741.8274 274365.055 0.858539458 0.643137249 0.693496447 1.039463134 0.745809965 0.605029757 0.69449935 0.517002504 0.771752173 1 18.06573722 -4.226370215 21.62800417 0.732058544 0.858541058 0.039189293 0.155320649 8732.190192 5384767.143 0.039205457 5.212544076 5.94E-05 4.226370215 0.126482515 TS(ph)PINLGLNVNDLLK ddPTM_HeLa_A485_30min_R1 1 TSPINLGLNVNDLLK 15 0 P50616 P50616 TOB1 Protein Tob1 1 0 T(0.188)S(0.812)PINLGLNVNDLLK 218.66 1.67E-33 375680000 117180 102290 79689 200660 164690 126250 215050 230830 107530 289910 TRUE FALSE FALSE 143246.2867 114251.9257 109169.2772 211621.5477 148292.8853 132860.2548 169102.8107 174218.5806 129110.2847 217640.7724 0.658177625 0.524956443 0.501603059 0.972343304 0.68136537 0.610456641 0.776981302 0.80048687 0.593226551 1 17.73158933 -14 0.115567534 1.965647806 0.525532809 0.349336371 0.132612927 190.0361239 1.437842032 43.69346729 1.486708177 1.00E-14 14 -1.440114997 TS(ph)PITR ddPTM_HeLa_A485_30min_R1 3 TSPITR 6 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.155)S(0.845)PITR;T(0.179)S(0.821)PITR;T(0.166)S(0.834)PITR ;; 111.82 0.0085838 5618400000 3529400 4597100 4434270 4781500 5344640 3743620 4547460 4202700 4134900 5977650 TRUE FALSE FALSE 4314502.854 5134690.856 6074690.998 5042701.238 4812508.875 3939630.154 3575858.022 3171981.235 4964736.502 4487531.865 0.961442277 1.144212678 1.353681975 1.123713745 1.072417761 0.877905778 0.796842926 0.706843167 1.106340111 1 22.09749075 -6.122588194 2.71386271 0.871175669 1.15839633 0.427211133 0.135236729 0.249203096 3.564295205 0.049240542 0.049783722 7.54E-07 6.122588194 0.287220661 TS(ph)PITR ddPTM_HeLa_A486_30min_R1 3 TSPITR 6 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.167)S(0.833)PITR;T(0.155)S(0.845)PITR;T(0.08)S(0.92)PITR ;; 139.28 0.0049994 10520700000 5420100 6245900 5029900 2175300 6340700 6366700 6452700 5955500 5795500 6495900 TRUE FALSE FALSE 5040178.979 5750952.137 6977611.985 5064208.334 5545390.281 5581241.286 4838166.21 4599562.658 6297858.606 4869284.359 1.035096455 1.181067219 1.432985111 1.040031339 1.138851189 1.146213873 0.993609297 0.944607527 1.293384847 1 22.21527832 TS(ph)PLKDNPS(ph)PEPQLDDIKR ddPTM_HeLa_A485_30min_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 2 0 T(0.387)S(0.613)PLKDNPS(1)PEPQLDDIKR 155.87 2.29E-08 415540000 1138500 620610 331970 2479100 1142200 965780 1986500 1477200 628450 3379300 TRUE FALSE FALSE 1391755.397 693184.9409 454779.5174 2614526.956 1028478.557 1016346.747 1562068.047 1114914.384 754574.1505 2536902.701 0.548604169 0.273240649 0.179265652 1.030598042 0.405407175 0.40062504 0.615738257 0.439478575 0.297439137 1 21.27463676 -10.50724217 2.746958484 1.023550791 0.468104216 0.337462399 0.224611946 24161632.45 25081523.77 4271447.632 0.058134058 3.11E-11 10.50724217 -0.555446575 TS(ph)PLKDNPS(ph)PEPQLDDIKR ddPTM_HeLa_A486_30min_R1 2 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 2 0 T(0.444)S(0.556)PLKDNPS(1)PEPQLDDIKR;T(0.446)S(0.554)PLKDNPS(1)PEPQLDDIKR ; 174.53 2.19E-12 1384810000 1224590 981760 304470 1079780 780120 1476920 2285500 1899910 788440 2827300 TRUE FALSE FALSE 1138752.565 903961.7621 422368.938 2513782.409 682270.0753 1294712.627 1713643.726 1467341.968 856782.614 2119325.677 0.537318345 0.426532728 0.199294022 1.186123698 0.321927905 0.610907819 0.808579703 0.692362662 0.404271332 1 21.01517387 -14 0.102970155 2.203012611 0.334628912 0.18374297 0.265319685 319.4568465 2.219429969 84.04311191 4.072230783 1.00E-14 14 -1.868383698 TS(ph)PLKDNPSPEPQLDDIKR ddPTM_HeLa_A485_30min_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 T(0.447)S(0.553)PLKDNPSPEPQLDDIKR 129.9 1.79E-06 686350000 460400 259680 171960 900940 451980 354760 784220 600150 276690 1067200 TRUE FALSE FALSE 562814.3916 290047.3171 235575.1599 950156.0709 406979.2842 373334.685 616664.9905 452962.2715 332219.145 801166.6804 0.702493508 0.362031178 0.294040136 1.185965535 0.507983288 0.465988781 0.769708733 0.56537832 0.414669198 1 19.6117429 -10.88124485 2.39964761 1.214289136 0.586937409 0.206920296 0.243509419 30224033.79 16258929.05 36741064.12 0.0621778 1.31E-11 10.88124485 -0.627351727 TS(ph)PLKDNPSPEPQLDDIKR ddPTM_HeLa_A486_30min_R1 1 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 T(0.141)S(0.859)PLKDNPSPEPQLDDIKR 199.94 7.89E-26 906960000 512120 398860 163470 396350 375120 616660 970950 824130 327180 1088800 TRUE FALSE FALSE 476223.0326 367252.881 226769.9619 922722.8304 328068.9517 540582.7589 728008.0403 636493.5896 355540.2258 816157.3931 0.583494111 0.449978012 0.277850772 1.130569714 0.401967751 0.662351115 0.891994665 0.77986623 0.435627036 1 19.63848787 -9.43641204 0.066612751 1.699902548 2.25E-16 0.193340681 0.240684726 154.0036729 2.54454118 42.4051632 23.16392733 3.66E-10 9.43641204 -1.699902548 TS(ph)PLNSSGSSQGR ddPTM_HeLa_A485_30min_R1 1 TSPLNSSGSSQGR 13 0 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 T(0.471)S(0.529)PLNSSGSSQGR 73.887 0.0088077 207350000 161240 140730 128980 242300 156690 101700 157180 120060 133470 295440 TRUE FALSE FALSE 197107.2817 157187.1493 176695.0693 255536.2355 141089.3934 107024.8547 123597.209 90615.09675 160256.2047 221792.2452 0.888702315 0.708713459 0.796669285 1.152142336 0.636133122 0.482545522 0.557265692 0.408558454 0.722550983 1 17.7588494 -5.972116327 24.91209834 0.588736855 0.870771436 0.29152507 0.185207965 228.6087122 204244.7227 0.055690986 0.063146537 1.07E-06 5.972116327 0.282034581 TS(ph)PLNSSGSSQGR ddPTM_HeLa_A486_30min_R1 2 TSPLNSSGSSQGR 13 0 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 T(0.175)S(0.825)PLNSSGSSQGR;T(0.047)S(0.953)PLNSSGSSQGR ; 216.18 3.14E-27 611090000 496240 568980 338790 178461 430560 563090 559930 495420 489850 633920 TRUE FALSE FALSE 461456.1386 523891.9526 469978.5611 415466.2269 376555.15 493621.6809 419829.5917 382623.6809 532310.5924 475182.3059 0.971113892 1.102507282 0.989048951 0.874330171 0.792443543 1.038804843 0.883512678 0.805214496 1.120223935 1 18.85812159 -5.023177393 6.843604106 0.920007046 1.039339486 0.148468558 0.101056065 0.263346992 51.99941848 0.026458924 0.04890369 9.48E-06 5.023177393 0.11933244 TS(ph)PLVSQNNEQGSTLR ddPTM_HeLa_A485_30min_R1 1 TSPLVSQNNEQGSTLR 16 0 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 T(0.187)S(0.813)PLVSQNNEQGSTLR 102.64 0.00023166 0 73082 91987 92983 107230 135910 86344 129550 123570 98662 121590 TRUE FALSE FALSE 89338.83877 102744.0795 127381.281 113087.7034 122378.3232 90864.83833 101870.5842 93264.26375 118462.5584 91279.8507 0.978735593 1.125594298 1.395502732 1.238912011 1.340693727 0.995453407 1.116024877 1.021739881 1.297795269 1 16.47800881 -6.267956474 24.98744975 1.089425321 1.222129118 0.189744013 0.133600725 938.8776897 3599777.274 0.04776931 0.043125216 5.40E-07 6.267956474 0.132703797 TS(ph)PLVSQNNEQGSTLR ddPTM_HeLa_A486_30min_R1 1 TSPLVSQNNEQGSTLR 16 0 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 T(0.007)S(0.993)PLVSQNNEQGSTLR 213.69 1.35E-24 0 195410 210820 137020 74609 195220 217720 257670 243790 197340 239970 TRUE FALSE FALSE 181712.7681 194113.8554 190077.8135 173693.5225 170733.6872 190859.92 193198.2406 188284.3389 214445.5901 179879.9501 1.010189118 1.079130027 1.056692608 0.965608021 0.949153517 1.061040544 1.074039884 1.04672221 1.192159493 1 17.45667486 -6.505558354 22.35521799 1.080040576 1.014697217 0.233833134 0.057240297 293.3571095 378634.6106 0.021024546 0.018077243 3.12E-07 6.505558354 -0.065343359 TS(ph)PPCS(ph)PANLSR ddPTM_HeLa_A485_30min_R1 2 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 T(0.151)S(0.849)PPCS(1)PANLSR;T(0.003)S(0.997)PPCS(1)PANLSR ; 233.59 3.14E-24 1904640000 767780 644550 635180 1002660 1004660 552420 843680 608080 620390 1295750 TRUE FALSE FALSE 938570.0122 719924.5157 870159.514 1057432.777 904632.5228 581343.857 663420.8758 458947.4266 744896.5824 972743.3715 0.964869091 0.740097066 0.894541705 1.087062434 0.92998066 0.597633327 0.682010174 0.471807303 0.76576886 1 19.89169972 -6.252352603 24.09894734 0.669092279 0.920630804 0.337024477 0.150352225 412.5557018 1094134.736 0.049130483 0.048408445 5.59E-07 6.252352603 0.251538525 TS(ph)PPCS(ph)PANLSR ddPTM_HeLa_A486_30min_R1 4 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 T(0.229)S(0.771)PPCS(1)PANLSR;T(0.165)S(0.835)PPCS(1)PANLSR;T(0.005)S(0.995)PPCS(1)PANLSR;T(0.192)S(0.808)PPCS(1)PANLSR ;;; 199.87 1.06E-16 4551490000 1418460 1907410 1100870 665760 1789290 1811410 2098650 1875590 1451520 1781250 TRUE FALSE FALSE 1319033.279 1756259.885 1527156.346 1549922.926 1564860.564 1587936.651 1573545.573 1448559.101 1577338.922 1335213.406 0.987881992 1.315340212 1.143754504 1.160805395 1.171992849 1.189275545 1.178497434 1.084889572 1.18133844 1 20.34863891 -9.393527172 0.541809162 0.977704117 1.168057022 0.25763288 0.078775488 10.51023934 2.803512771 0.539693587 0.03331887 4.04E-10 9.393527172 0.190352905 TS(ph)PPGGELSPGAGR ddPTM_HeLa_A485_30min_R1 1 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 T(0.178)S(0.822)PPGGELSPGAGR 154.7 3.09E-08 954630000 235670 261780 223500 281610 340910 236760 362840 299150 242290 405910 TRUE FALSE FALSE 288093.9784 292392.8938 306181.9506 296993.6412 306967.8034 249156.3875 285316.2699 225782.9935 290915.3806 304724.1072 0.945425621 0.959533187 1.004784142 0.974631262 1.007363041 0.817645804 0.936310135 0.740942341 0.954684496 1 18.21714411 -6.250822337 24.96869382 0.876625049 0.978564466 0.272804336 0.070539344 800.5485123 1882695.358 0.021874886 0.02166015 5.61E-07 6.250822337 0.101939417 TS(ph)PPGGELSPGAGR ddPTM_HeLa_A486_30min_R1 1 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 T(0.198)S(0.802)PPGGELSPGAGR 105.03 0.00037485 1239900000 272710 313640 223090 113810 311130 311720 425470 394650 245600 391310 TRUE FALSE FALSE 253594.4373 288786.0241 309476.4226 264955.4316 272105.1742 273263.1557 319012.9058 304796.8101 266888.8057 293323.429 0.864555682 0.984531052 1.055068883 0.903287653 0.927662598 0.931610396 1.087580719 1.03911512 0.909878923 1 18.16213278 -6.708050541 24.99995842 1.012404715 0.948668074 0.200300986 0.062852288 165.372245 77436.87283 0.024778301 0.019193167 1.96E-07 6.708050541 -0.063736641 TS(ph)PPLLDR ddPTM_HeLa_A485_30min_R1 4 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.134)S(0.866)PPLLDR;T(0.162)S(0.838)PPLLDR;T(0.12)S(0.88)PPLLDR;T(0.152)S(0.848)PPLLDR ;;; 204.48 1.39E-06 90943117000 11800680 11301187 10645199 15868921 15053497 10277127 15489078 12233392 10383294 19388427 TRUE FALSE FALSE 14425700.55 12622762.51 14583301.09 16735799.97 13554717.98 10815221.48 12179709.95 9233133.431 12467125.86 14555248.97 0.99109954 0.867230959 1.001927286 1.149812003 0.931259782 0.743046134 0.836791592 0.634350773 0.856538139 1 23.79503618 -6.091185991 5.062284486 0.794263946 0.998085481 0.398381809 0.108095195 0.212920522 8.895120272 0.035845323 0.036218883 8.11E-07 6.091185991 0.203821536 TS(ph)PPLLDR ddPTM_HeLa_A486_30min_R1 4 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.154)S(0.846)PPLLDR;T(0.147)S(0.853)PPLLDR;T(0.007)S(0.993)PPLLDR;T(0.141)S(0.859)PPLLDR ;;; 196.52 2.48E-06 1.29E+11 7358760 7811050 4973065 2916733 7092210 7596870 8880460 8259680 6272737 8772060 TRUE FALSE FALSE 6842948.925 7192073.951 6898768.951 6790301.828 6202638.89 6659645.419 6658474.98 6379131.172 6816462.894 6575479.079 1.04067686 1.093771855 1.04916598 1.032670281 0.943298399 1.012800031 1.012622031 0.970139376 1.03664886 1 22.64866458 -5.415962894 3.225984512 0.99573637 1.064816424 0.526355855 0.027551899 0.18545929 3.638249611 0.007859014 0.012122146 3.84E-06 5.415962894 0.069080054 TS(ph)PQVLGSILK ddPTM_HeLa_A485_30min_R1 3 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 T(0.472)S(0.528)PQVLGSILK;T(0.221)S(0.779)PQVLGSILK;T(0.045)S(0.955)PQVLGSILK ;; 194.59 2.87E-11 1899760000 1511850 1359470 974630 2168530 1866700 1363660 2305550 2265940 1257820 2525210 TRUE FALSE FALSE 1848155.817 1518448.191 1335186.195 2286991.303 1680844.794 1435059.129 1812950.408 1710214.662 1510252.937 1895721.62 0.974908867 0.800986904 0.704315539 1.206396171 0.886651698 0.756998873 0.956337887 0.90214441 0.796663878 1 20.85431569 TS(ph)PQVLGSILK ddPTM_HeLa_A486_30min_R1 1 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 T(0.039)S(0.961)PQVLGSILK 183.06 1.70E-10 106580000 226110 228370 120050 107090 198520 237790 301850 284440 175390 295540 TRUE FALSE FALSE 210260.8566 210273.1295 166536.5751 249310.932 173619.7705 208453.8875 226323.9374 219679.2213 190592.9464 221534.8604 0.949109573 0.949164972 0.751739815 1.125380139 0.783713092 0.940952982 1.021617713 0.991623715 0.860329368 1 17.75717421 -6.52236787 24.99964119 0.969636205 0.91141369 0.062664882 0.103192268 57.48046732 2813095.654 0.037557233 0.029429336 3.00E-07 6.52236787 -0.058222515 TS(ph)PRPAS(ph)PAR ddPTM_HeLa_A485_30min_R1 1 TSPRPASPAR 10 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 2 0 T(0.457)S(0.543)PRPAS(1)PAR 58.071 0.0043496 0 445920 520500 384740 488110 484450 440030 527710 615920 339060 528880 TRUE FALSE FALSE 545113.3656 581367.9473 527071.3364 514774.2133 436216.457 463069.2904 414960.4475 464864.6543 407106.232 397039.9493 1.372943369 1.464255545 1.327502024 1.29653002 1.09867145 1.166304024 1.045135252 1.170825896 1.025353324 1 18.59892465 -5.552193138 1.19269077 1.080111759 1.423707358 0.849154099 0.059151035 0.166391164 0.485913224 0.021324943 0.039405857 2.80E-06 5.552193138 0.343595599 TS(ph)PSGGTWSSVVSGAK ddPTM_HeLa_A485_30min_R1 1 TSPSGGTWSSVVSGAK 16 0 F8WB06 F8WB06 ATXN2 1 0 T(0.001)S(0.999)PSGGTWSSVVSGAK 403.99 3.25E-152 205230000 219480 197170 147970 262000 288760 199150 341950 331130 195610 369550 TRUE FALSE FALSE 268302.5688 220227.3163 202710.2605 276312.3966 260010.0405 209577.1861 268889.589 249919.8483 234867.1328 277427.9861 0.967107077 0.793817954 0.730677043 0.995978814 0.937216336 0.755429144 0.969223015 0.900845844 0.846587744 1 18.0817538 -14 0.199508507 1.559151494 0.855738204 0.139434977 0.089233637 284.8976822 2.817278297 63.51205848 0.219985898 1.00E-14 14 -0.70341329 TS(ph)PSGGTWSSVVSGAK ddPTM_HeLa_A486_30min_R1 1 TSPSGGTWSSVVSGAK 16 0 F8WB06 F8WB06 ATXN2 1 0 T(0.165)S(0.835)PSGGTWSSVVSGAK 199.37 5.07E-18 0 320210 303380 148820 148080 333100 332420 464630 444980 265260 399570 TRUE FALSE FALSE 297764.9326 279339.0639 206447.0895 344737.7235 291319.492 291409.4002 348374.6596 343667.7678 288252.9504 299515.0712 0.994156759 0.932637756 0.689271123 1.150986233 0.972637172 0.972937352 1.163128981 1.14741394 0.962398817 1 18.19226907 -5.281925718 24.99923338 1.056859369 0.878083423 0.390508491 0.103317284 820.9914415 1001844.097 0.029646535 0.044026425 5.22E-06 5.281925718 -0.178775946 TS(ph)PSGGTWSSVVSGVPR ddPTM_HeLa_A485_30min_R1 3 TSPSGGTWSSVVSGVPR 17 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 T(0.048)S(0.952)PSGGTWSSVVSGVPR;T(0.153)S(0.847)PSGGTWSSVVSGVPR;T(0.14)S(0.86)PSGGTWSSVVSGVPR ;; 398.32 3.14E-136 2157060000 1373940 1410710 1311520 1762380 1975470 1344830 1849560 1892250 1457740 2186940 TRUE FALSE FALSE 1679568.213 1575680.263 1796705.825 1858654.357 1778785.271 1415243.219 1454386.396 1428172.721 1750295.047 1641776.106 1.023019038 0.959741257 1.094367142 1.132099773 1.083451796 0.862019623 0.885861593 0.869894936 1.066098502 1 20.64682596 -6.250916916 24.8829977 0.92546128 1.059124738 0.410265934 0.07235699 658.576445 1557369.528 0.025143553 0.024886392 5.61E-07 6.250916916 0.133663458 TS(ph)PSGGTWSSVVSGVPR ddPTM_HeLa_A486_30min_R1 3 TSPSGGTWSSVVSGVPR 17 0 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 T(0.123)S(0.877)PSGGTWSSVVSGVPR;T(0.103)S(0.897)PSGGTWSSVVSGVPR;T(0.054)S(0.938)PS(0.009)GGTWSSVVSGVPR ;; 410.83 2.28E-153 2217620000 2118730 2181620 1529760 776890 2109460 2181110 2511380 2457660 1842640 2440940 TRUE FALSE FALSE 1970217.968 2008740.486 2122124.04 1808639.182 1844871.857 1912026.824 1883006.161 1898104.468 2002361.519 1829712.736 1.07679087 1.097844731 1.159812685 0.988482589 1.008284973 1.044987438 1.029126662 1.037378399 1.094358409 1 20.80318573 -5.26487181 24.9999731 1.030318037 1.110118958 0.55939375 0.03354603 226.2011867 1647525.576 0.009588344 0.014843701 5.43E-06 5.26487181 0.079800921 TS(ph)PSGGTWSSVVSGVPRLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TSPSGGTWSSVVSGVPRLSPK 21 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 2 0 T(0.409)S(0.591)PSGGTWSSVVSGVPRLS(1)PK;T(0.389)S(0.61)PS(0.001)GGTWSSVVSGVPRLS(1)PK ; 134.21 8.30E-07 1046780000 654920 527140 280211 508680 651060 788300 1171130 1045040 444010 1220720 TRUE FALSE FALSE 609013.49 485367.5066 388716.2035 1184232.747 569397.9839 691047.5608 878100.8871 807107.2051 482497.1443 915043.7664 0.665556679 0.53043092 0.424806133 1.294181536 0.622263114 0.755207113 0.9596272 0.882042187 0.527294062 1 19.80348122 TS(ph)PTFR ddPTM_HeLa_A485_30min_R1 3 TSPTFR 6 0 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 1 0 T(0.204)S(0.796)PTFR;T(0.231)S(0.769)PTFR;T(0.154)S(0.845)PTFR ;; 111.65 0.0086272 1586190000 1702620 1755720 1767270 2479990 2697040 1612330 2484580 2271840 1737480 3675990 TRUE FALSE FALSE 2081361.945 1961036.181 2421056.715 2615465.574 2428513.228 1696749.106 1953729.186 1714667.678 2086176.299 2759633.345 0.754216842 0.710614758 0.877311009 0.94775836 0.880013003 0.614845849 0.707966944 0.621338948 0.755961404 1 21.39604517 -6.244307739 24.92834669 0.714352826 0.835857004 0.117818607 0.118516003 1341.285951 1951714.038 0.039103503 0.039014141 5.70E-07 6.244307739 0.121504179 TS(ph)PTFR ddPTM_HeLa_A486_30min_R1 6 TSPTFR 6 0 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 1 0 T(0.209)S(0.79)PTFR;T(0.091)S(0.909)PTFR;T(0.299)S(0.701)PTFR;T(0.103)S(0.897)PTFR;T(0.316)S(0.684)PTFR;T(0.228)S(0.772)PTFR ;;;;; 181.49 0.0045983 7403050000 7964180 9603390 6978190 4358530 10811960 10028140 12589330 12002350 8178930 10833710 TRUE FALSE FALSE 7405932.109 8842382.401 9680332.05 10146878.11 9455823.159 8790970.045 9439346.478 9269676.914 8887886.238 8120878.5 0.91196194 1.088845548 1.192030154 1.24948035 1.164384267 1.082514662 1.162355338 1.141462332 1.094448863 1 22.95320437 -4.309470646 3.17458962 1.14488478 0.889694619 0.514251868 0.064490316 0.227912382 3.707647238 0.016465957 0.134706472 4.90E-05 4.309470646 -0.255190161 TS(ph)PTPPESATTVK ddPTM_HeLa_A485_30min_R1 5 TSPTPPESATTVK 13 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 T(0.164)S(0.836)PTPPESATTVK;T(0.002)S(0.998)PTPPESATTVK;T(0.318)S(0.681)PT(0.001)PPESATTVK;T(0.164)S(0.836)PTPPESATTVK;T(0.004)S(0.995)PT(0.001)PPESATTVK ;;;; 258.6 2.69E-41 4440950000 4420090 3507130 2608120 5923410 5467870 4111310 6865940 6665020 3466650 8559570 TRUE FALSE FALSE 5403323.771 3917258.346 3572972.121 6246990.889 4923469.664 4326571.834 5398975.829 5030413.395 4162374.857 6425826.726 0.840876046 0.609611574 0.556033064 0.97216921 0.766200191 0.673309757 0.840199411 0.782842988 0.647757096 1 22.61545065 -10.75007356 2.500958846 1.060886325 0.743157769 0.29716777 0.118468702 27575613.54 19722503.52 10361330.96 0.030301551 1.78E-11 10.75007356 -0.317728556 TS(ph)PTPPESATTVK ddPTM_HeLa_A486_30min_R1 3 TSPTPPESATTVK 13 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 T(0.155)S(0.844)PTPPESATTVK;T(0.037)S(0.963)PTPPESATTVK;T(0.042)S(0.957)PT(0.002)PPESATTVK ;; 231.07 5.08E-28 2918760000 2526010 2390300 1322020 1330560 2455200 2880930 3749900 3445350 1872940 3534080 TRUE FALSE FALSE 2348949.743 2200883.923 1833941.549 3097610.923 2147245.922 2525510.148 2811635.358 2660919.016 2035287.947 2649123.365 0.886689451 0.830797067 0.692282426 1.169296592 0.810549614 0.953338067 1.061345574 1.004452662 0.768287341 1 21.3370836 -5.238327878 24.97949473 0.963812345 0.806010413 0.290972969 0.116869361 1047.913735 1132610.319 0.031002512 0.053654308 5.78E-06 5.238327878 -0.157801932 TS(ph)PTVATQTGASATSTR ddPTM_HeLa_A485_30min_R1 4 TSPTVATQTGASATSTR 17 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.175)S(0.825)PTVATQTGASATSTR;T(0.173)S(0.822)PT(0.005)VATQTGASATSTR;T(0.019)S(0.981)PTVATQTGASATSTR;T(0.002)S(0.996)PT(0.002)VATQTGASATSTR ;;; 290 3.01E-68 2605870000 769700 903760 808660 1019230 1170690 890860 1257600 1210370 768080 1369790 TRUE FALSE FALSE 940917.1096 1009446.87 1107816.985 1074907.954 1054131.993 937504.0521 988903.4864 913524.8597 922226.6108 1028326.562 0.914998352 0.981640373 1.077300758 1.045298248 1.025094588 0.911679311 0.961662883 0.888360656 0.896822707 1 19.97186706 -6.260232103 24.98802874 0.926600011 1.013179799 0.368660324 0.050107798 114.5235952 2370400.505 0.017837702 0.016926518 5.49E-07 6.260232103 0.086579787 TS(ph)PTVATQTGASATSTR ddPTM_HeLa_A486_30min_R1 4 TSPTVATQTGASATSTR 17 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.002)S(0.997)PTVATQTGASATSTR;T(0.05)S(0.95)PTVATQTGASATSTR;TS(1)PTVATQTGASATSTR;T(0.007)S(0.992)PT(0.001)VATQTGASATSTR ;;; 346.05 3.98E-105 2466970000 1036484 988458 693761 382540 1121530 1034910 1159860 1151690 882526 1220250 TRUE FALSE FALSE 963831.824 910128.9882 962403.8388 890572.4525 980857.2495 907233.3264 869650.7603 889475.3282 959024.0643 914691.4575 1.053723434 0.995012013 1.052162268 0.97363154 1.072336733 0.991846288 0.95075859 0.972432093 1.04846728 1 19.80292565 -6.485057924 24.75231933 0.9878579 1.026279348 0.201538732 0.035677817 765.0180072 500676.5094 0.012139459 0.010703614 3.27E-07 6.485057924 0.038421448 TS(ph)PYILR ddPTM_HeLa_A485_30min_R1 1 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 0 T(0.364)S(0.636)PYILR 171.09 5.43E-07 0 514730 505220 484140 719870 754710 458300 621330 492800 479040 914480 TRUE FALSE FALSE 629229.9127 564301.0842 663243.5327 759194.6753 679568.4225 482295.8793 488577.7697 371940.0273 575178.934 686516.9658 0.916554061 0.821976895 0.96609926 1.105864404 0.989878556 0.702525798 0.711676177 0.541778348 0.837821879 1 19.38893585 -6.262092954 24.96220781 0.727178814 0.960836677 0.368551955 0.128468629 56.78155153 2168641.835 0.044168426 0.041290733 5.47E-07 6.262092954 0.233657863 TS(ph)PYILR ddPTM_HeLa_A486_30min_R1 3 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 0 T(0.238)S(0.762)PYILR;T(0.305)S(0.695)PYILR;T(0.398)S(0.602)PYILR ;; 184.49 0.00050793 2569150000 3264450 3435180 2215430 1309370 3097790 3562870 3994870 3742780 2804000 4059910 TRUE FALSE FALSE 3035628.913 3162963.826 3073303.827 3048279.532 2709236.292 3123319.324 2995311.273 2890630.698 3047052.978 3043282.11 0.997485216 1.039326527 1.009864914 1.001642116 0.890235014 1.026299637 0.984237137 0.949839875 1.001239079 1 21.53719665 -5.534939953 24.99990058 0.973082096 1.015905316 0.207906109 0.035780037 323.2901518 670096.6628 0.010356573 0.013378137 2.92E-06 5.534939953 0.04282322 TS(ph)QETADVK ddPTM_HeLa_A485_30min_R1 4 TSQETADVK 9 0 H3BVG0;Q8N1F7;H3BNN5;H3BV11;H3BRI8;H3BM93 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 T(0.029)S(0.971)QETADVK;T(0.333)S(0.667)QETADVK;T(0.194)S(0.806)QETADVK;T(0.209)S(0.791)QETADVK ;;; 140.75 0.00013007 1555120000 3645030 3106350 2351660 5765300 4232420 3213100 5335520 4454760 2984160 7813200 TRUE FALSE FALSE 4455854.348 3469610.611 3221636.895 6080243.74 3811025.404 3381332.948 4195542.565 3362223.125 3583053.54 5865513.031 0.759670011 0.591527219 0.549250658 1.036609024 0.649734368 0.57647693 0.715289957 0.573218934 0.610867885 1 22.48382587 -10.46185989 2.893051433 1.009057245 0.672942412 0.338736587 0.136798649 29447146.94 33392232.51 2154995.585 0.035753637 3.45E-11 10.46185989 -0.336114833 TS(ph)QETADVK ddPTM_HeLa_A486_30min_R1 4 TSQETADVK 9 0 H3BVG0;Q8N1F7;H3BNN5;H3BV11;H3BRI8;H3BM93 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 T(0.053)S(0.947)QETADVK;T(0.066)S(0.934)QETADVK;T(0.077)S(0.923)QETADVK;T(0.312)S(0.688)QETADVK ;;; 158.34 2.35E-05 2499410000 7528500 6995500 3592070 3901860 5956400 8553300 10438000 9045000 5803150 12223000 TRUE FALSE FALSE 7000791.027 6441151.103 4983015.703 9083727.269 5209292.771 7498080.81 7826301.998 6985650.951 6306171.714 9162281.242 0.764088205 0.703007355 0.543861902 0.991426374 0.568558488 0.818363965 0.854187051 0.76243577 0.688275283 1 23.12727542 -14 0.213921785 2.230090262 0.71092039 0.27199814 0.124912747 198.2782657 1.980478067 105.0428759 0.248328351 1.00E-14 14 -1.519169872 TS(ph)QNISIR ddPTM_HeLa_A486_30min_R1 1 TSQNISIR 8 0 Q86UY5-2 Q86UY5-2 1 0 T(0.027)S(0.486)QNIS(0.486)IR 66.299 0.021092 196280000 188560 414040 319040 170850 512040 524060 554340 615960 389610 316010 TRUE FALSE FALSE 175342.9177 381229.9625 442580.8322 397747.4343 447815.1686 459406.8055 415638.2688 475719.3543 423381.7085 236879.0391 0.740221331 1.609386647 1.868383264 1.67911621 1.890480349 1.939415185 1.754643511 2.008279652 1.787332936 1 17.85379102 -4.267064806 3.049982415 1.787126697 0.58068268 0.546851954 0.268860143 0.237942334 3.350492223 0.062618937 0.690972945 5.41E-05 4.267064806 -1.206444017 TS(ph)RDT(ph)SPSSGSAVSSSK ddPTM_HeLa_A486_30min_R1 1 TSRDTSPSSGSAVSSSK 17 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 2 0 T(0.544)S(0.615)RDT(0.586)S(0.255)PSSGSAVSSSK 106.69 0.00017238 276650000 342520 344420 214340 257740 417850 545490 688460 632340 344070 662960 TRUE FALSE FALSE 318511.1168 317126.9048 297338.1882 600031.7455 365439.3567 478192.9899 516200.0262 488369.9859 373894.2646 496950.5009 0.640931272 0.63814586 0.598325563 1.20742759 0.735363695 0.96225477 1.038735297 0.982733663 0.752377277 1 18.92274263 -5.230013614 24.97141554 0.948156865 0.627035301 0.579234238 0.128163642 467.5461916 371519.1271 0.033458286 0.057944562 5.89E-06 5.230013614 -0.321121564 TS(ph)RDTS(ph)PSSGSAVSSSK ddPTM_HeLa_A486_30min_R1 1 TSRDTSPSSGSAVSSSK 17 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 2 0 T(0.418)S(0.581)RDTS(0.902)PS(0.055)S(0.04)GS(0.001)AVS(0.001)S(0.001)SK 169.43 1.79E-11 329240000 673610 743360 436100 540240 921330 1197900 1453100 1435600 798860 1306100 TRUE FALSE FALSE 626393.4175 684453.4463 604969.5992 1257706.022 805768.2003 1050115.277 1089519.011 1108745.219 868105.828 979044.0587 0.639801051 0.699103825 0.617918666 1.284626581 0.82301526 1.072592462 1.112839612 1.132477348 0.886687193 1 19.90101426 -5.241454903 24.88938706 1.044901672 0.656957386 0.682419919 0.122636115 429.8955317 535406.5762 0.031794059 0.054974006 5.74E-06 5.241454903 -0.387944286 TS(ph)RDTSPSSGS(ph)AVSSSK ddPTM_HeLa_A485_30min_R1 1 TSRDTSPSSGSAVSSSK 17 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 2 0 T(0.433)S(0.555)RDT(0.01)S(0.007)PS(0.325)S(0.254)GS(0.417)AVSSSK 130.56 5.24E-05 229470000 157560 130750 105200 347820 310470 179790 330010 271560 196520 529530 TRUE FALSE FALSE 192608.6784 146040.0751 144117.8577 366820.5259 279558.5167 189203.5264 259500.6676 204959.4842 235959.7614 397527.9163 0.484516107 0.367370615 0.362535188 0.922754128 0.703242477 0.475950288 0.652786023 0.515585135 0.593567777 1 18.60069665 -14 0.18249272 2.734960339 0.4818378 0.417915799 0.156988764 150.0970569 1.450890266 95.02714176 0.518537842 1.00E-14 14 -2.25312254 TS(ph)RQLT(ph)VHHRFHYGEK ddPTM_HeLa_A486_30min_R1 2 TSRQLTVHHRFHYGEK 16 2 Q96SK3-3;Q96SK3 Q96SK3-3 ZNF607 Zinc finger protein 607 2 0 T(0.478)S(0.519)RQLT(0.758)VHHRFHY(0.245)GEK;T(0.482)S(0.517)RQLT(0.84)VHHRFHY(0.161)GEK ; 57.009 0.028015 2272100000 1206270 923460 172805 525430 388390 959640 1616700 1036240 524120 3947600 TRUE FALSE FALSE 1121716.702 850281.6664 239719.7239 1223227.594 339674.5046 841249.3737 1212184.56 800310.773 569551.1436 2959095.265 0.379074211 0.287345148 0.081011155 0.413378916 0.114789986 0.284292765 0.409647021 0.270457928 0.192474757 1 21.49672471 -10.87339259 2.812497733 1.321770006 0.269362899 0.802041999 0.108759016 24774298.78 18635399.69 53370944.65 0.026235389 1.34E-11 10.87339259 -1.052407107 TS(ph)S(ph)EEEDSRR ddPTM_HeLa_A485_30min_R1 1 TSSEEEDSRR 10 1 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 2 0 T(0.485)S(0.597)S(0.918)EEEDSRR 70.089 0.0019476 0 226410 236280 101120 459620 112300 178580 216280 201580 159140 482110 TRUE FALSE FALSE 276774.1234 263910.8906 138528.496 484727.8768 101119.0177 187930.1727 170070.0112 152142.1889 191077.9383 361928.8496 0.764719706 0.729178928 0.382750632 1.339290519 0.279389216 0.51924618 0.469899018 0.420364912 0.527943375 1 18.46534658 -4.550503224 24.98434581 0.59855901 0.755835083 0.026093296 0.302975776 698.8277972 632037.119 0.075683008 0.200247017 2.82E-05 4.550503224 0.157276073 TS(ph)SASRPASLPR ddPTM_HeLa_A486_30min_R1 1 TSSASRPASLPR 12 1 Q69YQ0-2;Q69YQ0;A0A494C1J1 Q69YQ0-2 SPECC1L Cytospin-A 1 0 T(0.238)S(0.335)S(0.335)AS(0.091)RPASLPR 65.374 0.0044042 0 55534 62759 50071 21540 76650 55507 70545 66627 48921 67837 TRUE FALSE FALSE 51641.35338 57785.74828 69459.83215 50146.20857 67035.84227 48659.11069 52893.89485 51457.48656 53161.51167 50850.17366 1.015559037 1.136392349 1.365970402 0.986156093 1.318301147 0.956911397 1.040191037 1.011943182 1.045453886 1 15.63396508 -6.288205449 24.99545804 1.013477041 1.164203142 0.321890445 0.11142052 926.8414983 865526.6843 0.037843667 0.033384877 5.15E-07 6.288205449 0.150726101 TS(ph)SGTSLSAMHSSGSSGK ddPTM_HeLa_A486_30min_R1 1 TSSGTSLSAMHSSGSSGK 18 0 Q12888;Q12888-2;Q12888-3;A6NNK5;M0R142 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.104)S(0.442)S(0.442)GT(0.006)S(0.006)LS(0.001)AMHSSGSSGK 94.384 0.00032063 179270000 304000 345430 298970 24295 446240 204320 248160 271130 378740 73871 TRUE FALSE FALSE 282691.1699 318056.8688 414739.1907 56559.9878 390268.4182 179113.0758 186067.7432 209399.6177 411569.4881 55373.22078 5.105196445 5.743875185 7.489887437 1.021432147 7.047963125 3.234651574 3.360247799 3.781604443 7.43264492 1 15.75690082 -10.78613967 2.727450035 1.58E-05 4.833299145 0.255524585 1.999595464 91636541.88 88528955.43 619387752.1 0.50395582 1.64E-11 10.78613967 4.833283359 TS(ph)SKES(ph)SPIPS(ph)PTSDRK ddPTM_HeLa_A485_30min_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.302)S(0.349)S(0.349)KES(0.571)S(0.428)PIPS(0.997)PT(0.002)S(0.001)DRK 94.837 0.00068545 1496900000 731680 446740 246610 2100400 789230 577960 1556600 1180500 384170 2647800 TRUE FALSE FALSE 894439.6917 498982.3569 337841.3013 2215139.534 710651.49 608221.0919 1224019.694 890980.524 461269.3952 1987752.189 0.449975453 0.251028453 0.169961479 1.114394212 0.357515134 0.305984365 0.61578083 0.448235212 0.232055785 1 20.92270648 -11.0817952 2.619929582 1.910618193 0.444049778 0.299694621 0.257444991 110865725.3 40324025.27 602131651.3 0.065516406 8.28E-12 11.0817952 -1.466568415 TS(ph)SKESS(ph)PIPS(ph)PTSDRK ddPTM_HeLa_A486_30min_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.307)S(0.349)S(0.349)KES(0.436)S(0.56)PIPS(0.973)PT(0.014)S(0.013)DRK 83.039 0.0024245 1154200000 551750 497130 149850 695670 385380 794770 1210400 1025900 360550 1776400 TRUE FALSE FALSE 513075.1742 457735.6083 207875.9331 1619554.917 337042.0469 696719.358 907545.1177 792324.9652 391802.7643 1331577.878 0.385313682 0.34375429 0.156112486 1.216267516 0.253114784 0.523228397 0.68155617 0.595027132 0.294239466 1 20.34470538 -14 0.246017821 3.848780461 0.459086425 0.211184909 0.287047861 293.2915765 2.918810707 420.9467155 0.429198786 1.00E-14 14 -3.389694036 TS(ph)SKESS(ph)PIPSPTSDR ddPTM_HeLa_A486_30min_R1 1 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 T(0.308)S(0.346)S(0.346)KES(0.385)S(0.613)PIPS(0.001)PTSDR 50.055 0.0062114 0 192180 186350 66047 169590 169770 221760 323760 299940 121910 412180 TRUE FALSE FALSE 178709.1744 171582.9473 91622.1672 394814.0906 148475.8636 194401.5059 242751.8236 231650.2096 132477.257 308967.4452 0.578407781 0.555343128 0.29654311 1.277850132 0.480555042 0.629197376 0.785687384 0.749756045 0.428774161 1 18.23709531 -11.60677985 2.263021239 9.249942511 0.650625729 0.151753389 0.252932597 14221932.02 642380.5359 614283739.3 0.061794114 2.47E-12 11.60677985 -8.599316782 TS(ph)SLDTLAAPYLAGHWPR ddPTM_HeLa_A485_30min_R1 1 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.076)S(0.462)S(0.462)LDTLAAPYLAGHWPR 265.64 2.79E-58 949530000 169070 175920 173240 194030 207680 183500 239130 230430 166920 286700 TRUE FALSE FALSE 206679.0382 196492.3137 237328.6851 204629.3676 187002.65 193107.7763 188037.922 173916.6812 200419.3129 215230.9663 0.960266275 0.912937005 1.102669793 0.950743153 0.868846399 0.897211863 0.87365645 0.808046742 0.931182517 1 17.71552613 -5.5912725 5.298574723 0.886581218 0.990580894 0.303539799 0.064217798 0.219691149 11.58810087 0.018818197 0.024612894 2.56E-06 5.5912725 0.103999675 TS(ph)TSSSSVQAR ddPTM_HeLa_A485_30min_R1 1 TSTSSSSVQAR 11 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.204)S(0.795)T(0.001)SSSSVQAR 71.153 0.012857 53525000 91189 91540 88484 114970 131500 88507 106680 107030 86608 139810 TRUE FALSE FALSE 111473.6785 102244.8067 121217.9137 121250.52 118407.3983 93141.08966 83886.9465 80780.72468 103989.4312 104957.94 1.062079519 0.974150281 1.154918949 1.155229609 1.128141408 0.887413469 0.799243454 0.769648534 0.99077241 1 16.67945178 -6.29112919 7.420628603 0.868742259 1.094910502 0.592731513 0.084314022 0.156299041 32.4536415 0.030496244 0.027284284 5.12E-07 6.29112919 0.226168243 TS(ph)TSSSSVQAR ddPTM_HeLa_A486_30min_R1 1 TSTSSSSVQAR 11 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.049)S(0.951)TSSSSVQAR 155.86 3.18E-07 47068000 86691 100410 66662 32839 96800 93879 111180 107380 77125 90424 TRUE FALSE FALSE 80614.40857 92453.14591 92475.31167 76450.85159 84658.44138 82297.16347 83361.58806 82931.91809 83810.2571 67781.24184 1.189332128 1.363993096 1.364320115 1.127905738 1.248995136 1.21415839 1.229862213 1.223523144 1.236481581 1 16.04859845 -13.91422582 0.187147838 2.84E-11 1.292662513 0.55060319 0.067251287 101.8278027 1.021078002 37.97250203 0.196784251 1.22E-14 13.91422582 1.292662513 TS(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_A485_30min_R1 2 TSVQTEDDQLIAGQSAR 17 0 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 T(0.169)S(0.831)VQTEDDQLIAGQSAR;T(0.414)S(0.586)VQTEDDQLIAGQSAR ; 228.3 1.66E-34 643840000 408610 400390 332410 536430 541690 427980 522830 473180 427590 856140 TRUE FALSE FALSE 499503.8848 447212.1276 455382.2917 565733.8126 487757.4416 450388.371 411123.0994 357131.8631 513403.3909 642720.0541 0.777171774 0.695811691 0.708523546 0.880218081 0.758895632 0.700753568 0.639661228 0.555656947 0.79879784 1 19.29383096 -8.015487369 24.64988311 1.000000009 0.715262369 0.536216484 0.080480241 642.1191032 1022004.79 0.084535516 0.021826976 9.65E-09 8.015487369 -0.28473764 TS(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_A486_30min_R1 4 TSVQTEDDQLIAGQSAR 17 0 G3XAM7;P35221;P35221-2;P26232-2;P26232-5;P26232;P26232-3;P35221-3;P26232-4;P26232-6;A0A0A0MRI5;A0A0A0MTJ6 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 T(0.01)S(0.99)VQTEDDQLIAGQSAR;T(0.022)S(0.978)VQTEDDQLIAGQSAR;T(0.181)S(0.819)VQTEDDQLIAGQSAR;T(0.001)S(0.999)VQTEDDQLIAGQSAR ;;; 415.1 1.85E-215 360690000 614990 760590 528562 304135 717680 731160 913520 847160 650110 810100 TRUE FALSE FALSE 571882.3768 700318.0784 733235.3618 708041.6501 627661.8823 640956.9131 684947.6338 654280.1614 706462.0582 607245.6871 0.941764411 1.153269744 1.207477265 1.165988767 1.03362098 1.05551497 1.127958005 1.077455427 1.163387527 1 19.21192081 -5.75488036 24.99771116 1.081736956 1.12616053 0.053795134 0.07838415 484.212219 1845415.276 0.023799231 0.029987358 1.76E-06 5.75488036 0.044423573 TSAAACAVTDLS(ph)DDS(ph)DFDEKAK ddPTM_HeLa_A485_30min_R1 1 TSAAACAVTDLSDDSDFDEKAK 22 1 Q9NQZ2 Q9NQZ2 UTP3 Something about silencing protein 10 2 0 TSAAACAVTDLS(1)DDS(1)DFDEKAK 134.2 1.30E-06 323600000 225320 147730 99953 481440 300490 225170 490050 454990 184990 725060 TRUE FALSE FALSE 275441.6567 165005.7384 136929.7741 507739.8481 270572.1605 236959.553 385346.8142 343402.9891 222115.7962 544315.8857 0.506032736 0.303143345 0.251563068 0.932803656 0.497086651 0.435334627 0.707947029 0.630889155 0.408064144 1 19.05408462 -14 0.1421789 2.583095349 0.363640382 0.371269976 0.188571237 155.8471945 1.346958488 70.48711928 1.148161975 1.00E-14 14 -2.219454968 TSAAACAVTDLS(ph)DDS(ph)DFDEKAK ddPTM_HeLa_A486_30min_R1 3 TSAAACAVTDLSDDSDFDEKAK 22 1 Q9NQZ2 Q9NQZ2 UTP3 Something about silencing protein 10 2 0 TSAAACAVT(0.003)DLS(0.997)DDS(1)DFDEKAK;TSAAACAVTDLS(1)DDS(1)DFDEKAK;TSAAACAVTDLS(1)DDS(1)DFDEKAK ;; 153.82 8.68E-10 786510000 658490 577680 228708 830520 573230 837700 1379500 1216300 442598 1602500 TRUE FALSE FALSE 612333.2514 531902.5329 317269.8626 1933492.532 501330.1482 734353.0911 1034334.509 939375.0416 480962.751 1201223.569 0.509757939 0.442800613 0.264122242 1.60960256 0.417349577 0.611337564 0.861067444 0.78201516 0.400394034 1 20.19607326 TSADAQEPAS(ph)PVVSPQQS(ph)PPT(ph)SPHTWR ddPTM_HeLa_A485_30min_R1 2 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 3 0 T(0.004)S(0.004)ADAQEPAS(0.992)PVVS(0.003)PQQS(0.899)PPT(0.611)S(0.45)PHT(0.036)WR;T(0.001)S(0.001)ADAQEPAS(0.999)PVVS(0.02)PQQS(0.87)PPT(0.576)S(0.422)PHT(0.113)WR ; 101.34 0.0021464 462330000 196945 178887 186607 229550 278200 179083 255990 258330 172558 344990 TRUE FALSE FALSE 240754.7358 199806.2785 255640.6947 242089.7352 250501.4312 188459.509 201295.6453 194974.1625 207188.8078 258990.3421 0.929589628 0.771481581 0.987066516 0.934744258 0.96722306 0.727670026 0.777232246 0.752824066 0.799986618 1 17.98253877 -6.257472874 24.96561861 0.793949699 0.91464486 0.255321751 0.088311599 418.2391152 2632446.598 0.028866481 0.027845096 5.53E-07 6.257472874 0.120695161 TSADAQEPAS(ph)PVVSPQQS(ph)PPTS(ph)PHTWR ddPTM_HeLa_A486_30min_R1 2 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 3 0 T(0.001)S(0.001)ADAQEPAS(0.999)PVVS(0.127)PQQS(0.839)PPT(0.311)S(0.675)PHT(0.047)WR;TSADAQEPAS(1)PVVS(0.001)PQQS(0.837)PPT(0.344)S(0.695)PHT(0.123)WR ; 101.25 0.00096388 624050000 267357 318140 211007 151320 354240 346090 393870 408430 279779 362000 TRUE FALSE FALSE 248616.6549 292929.4278 292714.5614 352280.6073 309807.916 303392.9346 295319.5601 315439.405 304030.469 271352.8438 0.916211717 1.079514862 1.078723028 1.298238126 1.14171612 1.118075382 1.08832307 1.162469501 1.120424849 1 18.0498105 -4.240891084 1.821564576 1.137171818 0.838660144 0.433826456 0.071569505 0.822968971 2.675394976 0.019328445 0.428816272 5.74E-05 4.240891084 -0.298511675 TSADAQEPASPVVSPQQS(ph)PPT(ph)SPHTWR ddPTM_HeLa_A486_30min_R1 1 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 TSADAQEPASPVVSPQQS(0.998)PPT(0.71)S(0.285)PHT(0.007)WR 150.55 5.98E-09 279070000 104190 97344 69166 32816 113070 98802 115300 107430 81678 120930 TRUE FALSE FALSE 96886.81904 89630.10692 95948.92753 76397.30643 98887.70626 86612.81379 86450.72048 82970.53418 88757.9148 90648.34088 1.068820655 0.988767208 1.058474172 0.842787697 1.090893725 0.955481512 0.953693357 0.915301189 0.979145497 1 16.46799299 -1.00000148 0.579666741 0.962591503 6.649289547 0.173297294 0.064832689 263.4178718 2.192432033 0.029085107 1884.857406 0.099999659 1.00000148 5.686698044 TSADAQEPASPVVSPQQS(ph)PPTS(ph)PHTWR ddPTM_HeLa_A485_30min_R1 2 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 E9PMG1;H0YDT0;Q96D71-4;Q96D71-3;Q96D71;Q96D71-2;F2Z3L2 E9PMG1 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 TSADAQEPASPVVSPQQS(0.993)PPT(0.446)S(0.547)PHT(0.014)WR;TSADAQEPASPVVSPQQS(0.977)PPT(0.267)S(0.727)PHT(0.028)WR ; 117.24 0.00017001 381610000 31590 40392 40515 46480 76206 52575 68727 60881 44503 73041 TRUE FALSE FALSE 38617.08652 45115.49304 55503.18447 49019.08471 68618.66306 55327.7457 54042.915 45949.83929 53434.34389 54833.22292 0.704264394 0.822776606 1.012218168 0.893966871 1.251406709 1.009018671 0.985587061 0.837992678 0.974488477 1 15.74276265 -4.559650797 2.383955026 0.997115286 0.699441163 0.471776341 0.101442986 0.313931524 3.156935842 0.028801639 0.147623338 2.76E-05 4.559650797 -0.297674124 TSALS(ph)PNAK ddPTM_HeLa_A486_30min_R1 1 TSALSPNAK 9 0 P50616 P50616 TOB1 Protein Tob1 1 0 T(0.002)S(0.001)ALS(0.997)PNAK 72.817 0.013045 95982000 192670 167170 89371 85482 195830 178440 241030 220680 144200 277140 TRUE FALSE FALSE 179164.8279 153922.8404 123977.8446 199006.416 171267.1754 156425.887 180721.7446 170435.9814 156699.3721 207742.3401 0.862437709 0.740931484 0.596786599 0.957948273 0.824421133 0.752980288 0.86993217 0.820420052 0.754296751 1 17.66443576 -14 0.25367877 2.244267503 0.780116623 0.297306487 0.092052706 244.1800334 2.416646324 157.9950189 0.132043627 1.00E-14 14 -1.46415088 TSAQHALT(ph)SVSR ddPTM_HeLa_A486_30min_R1 1 TSAQHALTSVSR 12 0 P61073;P61073-2 P61073 CXCR4 C-X-C chemokine receptor type 4 1 0 TSAQHALT(0.707)S(0.287)VS(0.006)R 153.51 4.13E-07 354060000 794180 780300 519190 49492 678580 805080 720750 659810 957870 483990 TRUE FALSE FALSE 738512.0831 718466.1862 720234.2724 115219.8772 593466.1689 705757.4151 540410.7267 509585.6666 1040898.943 362795.7538 2.035613911 1.980359965 1.985233468 0.317588825 1.635813437 1.945329866 1.48957291 1.404607582 2.869104536 1 18.46879804 TSAQHALTS(ph)VSR ddPTM_HeLa_A485_30min_R1 2 TSAQHALTSVSR 12 0 P61073;P61073-2 P61073 CXCR4 C-X-C chemokine receptor type 4 1 0 TSAQHALT(0.207)S(0.791)VS(0.002)R;TSAQHALT(0.097)S(0.899)VS(0.004)R ; 132.88 2.25E-05 687340000 1311900 1306480 1057690 853300 1024650 711880 1269720 1104290 1237780 2426700 TRUE FALSE FALSE 1603727.629 1459261.471 1448973.545 899913.6183 922632.2482 749152.936 998433.9493 833461.146 1486191.092 1821768.35 0.880313696 0.801013735 0.795366516 0.493978073 0.50644872 0.41122294 0.548057578 0.457501167 0.815795868 1 20.79690809 -5.176979893 5.482571301 0.56792375 0.82894428 0.238488003 0.172771732 0.266043683 13.19477641 0.044954041 0.079178926 6.65E-06 5.176979893 0.261020529 TSAQHALTS(ph)VSR ddPTM_HeLa_A486_30min_R1 3 TSAQHALTSVSR 12 0 P61073;P61073-2 P61073 CXCR4 C-X-C chemokine receptor type 4 1 0 TSAQHALT(0.185)S(0.815)VSR;TSAQHALT(0.02)S(0.98)VSR;TSAQHALT(0.134)S(0.865)VSR ;; 167.69 1.40E-10 1257810000 1671780 1575320 1102580 126761 1447550 1554080 1402210 1550320 2029770 1091460 TRUE FALSE FALSE 1554596.855 1450485.906 1529528.504 295106.0141 1265984.781 1362353.41 1051362.227 1197345.979 2205712.098 818151.3118 1.90013367 1.77288221 1.869493432 0.360698577 1.547372427 1.665160699 1.285046191 1.46347743 2.695970863 1 19.64200816 TSAQHALTSVS(ph)R ddPTM_HeLa_A485_30min_R1 2 TSAQHALTSVSR 12 0 P61073;P61073-2 P61073 CXCR4 C-X-C chemokine receptor type 4 1 0 TSAQHALT(0.005)S(0.024)VS(0.971)R;TSAQHALT(0.021)S(0.394)VS(0.585)R ; 92.211 0.0014159 486810000 1279520 1120070 879540 1410990 1276430 887520 1359650 1047760 1127190 2474140 TRUE FALSE FALSE 1564144.81 1251052.443 1204918.447 1488068.811 1149344.147 933989.1748 1069149.67 790795.2172 1353406.694 1857382.431 0.842123186 0.673556733 0.648718555 0.80116447 0.618797792 0.502852379 0.57562172 0.425757886 0.728663452 1 20.82483946 -8.01805742 24.95525722 1.000000008 0.632528471 0.466515621 0.117179501 1128.7331 1559902.404 0.120314192 0.031064991 9.59E-09 8.01805742 -0.367471537 TSAQTT(ph)PSKIPR ddPTM_HeLa_A485_30min_R1 1 TSAQTTPSKIPR 12 1 O95684 O95684 FGFR1OP FGFR1 oncogene partner 1 0 T(0.026)S(0.084)AQT(0.208)T(0.682)PSKIPR 77.372 0.0092575 571870000 576050 545270 377790 755590 757240 611040 973450 945030 475880 1081700 TRUE FALSE FALSE 704190.3352 609034.5833 517550.2422 796865.9684 681846.5268 643033.1096 765464.4551 713259.9108 571384.751 812052.0972 0.86717384 0.749994471 0.637336255 0.981299071 0.8396586 0.791861891 0.942629737 0.878342551 0.703630657 1 19.63121276 -5.262051939 24.99991888 0.86936501 0.751350823 0.253697098 0.09788579 82.13600449 3352225.728 0.026806161 0.042646136 5.47E-06 5.262051939 -0.118014187 TSAQTT(ph)PSKIPR ddPTM_HeLa_A486_30min_R1 2 TSAQTTPSKIPR 12 1 O95684 O95684 FGFR1OP FGFR1 oncogene partner 1 0 TSAQT(0.023)T(0.977)PSKIPR;T(0.012)S(0.012)AQT(0.104)T(0.717)PS(0.155)KIPR ; 131.96 2.96E-05 846220000 1139690 1057710 562200 499460 998780 1129570 1410930 1392670 849280 1572290 TRUE FALSE FALSE 1059803.616 973893.2075 779898.8962 1162768.121 873503.6991 990215.138 1057900.391 1075589.443 922896.2742 1178578.35 0.89922203 0.826328778 0.661728511 0.986585339 0.741150301 0.840177607 0.897607181 0.912615986 0.783058907 1 20.16861624 -14 0.203202247 1.749317436 0.813493631 0.224738841 0.08890888 210.0273004 2.083840251 63.87064223 0.200547036 1.00E-14 14 -0.935823805 TSASEGNPYVSSTLSVPAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 TSASEGNPYVSSTLSVPASPR 21 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 TSASEGNPYVSSTLS(0.001)VPAS(0.999)PR;TSASEGNPYVSSTLS(0.001)VPAS(0.999)PR;TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR ;;; 368.76 4.68E-142 3242940000 725834 830573 735094 788714 1034193 733998 1065474 1055419 667729 1081548 TRUE FALSE FALSE 887293.2692 927701.2873 1007035.86 831799.4487 931225.1136 772429.0003 837826.7758 796575.8354 801736.0855 811937.988 1.092809158 1.142576528 1.240286666 1.024461795 1.146916547 0.951339895 1.031885179 0.981079648 0.987435121 1 19.63101002 -6.034186218 1.440042945 0.990103413 1.145545552 0.56688353 0.057714717 0.288220918 1.222309117 0.023286684 0.025348088 9.24E-07 6.034186218 0.155442139 TSASEGNPYVSSTLSVPAS(ph)PR ddPTM_HeLa_A486_30min_R1 5 TSASEGNPYVSSTLSVPASPR 21 0 G5E9V3;E9PFQ4;Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PDY7;A0A1W2PQ63 G5E9V3 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 TSASEGNPYVSSTLS(0.001)VPAS(0.999)PR;TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR ;;;; 377.46 1.60E-142 3298340000 841068 803012 619520 265396 892414 809886 952545 947313 711898 912470 TRUE FALSE FALSE 782113.4765 739378.4046 859414.7353 617855.3004 780479.1147 709970.4996 714208.166 731630.5096 773605.8918 683981.5728 1.143471561 1.080991702 1.256488142 0.903321559 1.141082078 1.037996531 1.044192116 1.069664065 1.131033236 1 19.38359793 -5.244143138 24.99197151 1.053116801 1.152384569 0.323427834 0.074608921 1066.059227 1540384.965 0.01926356 0.033257982 5.70E-06 5.244143138 0.099267767 TSAVSS(ph)PLLDQQR ddPTM_HeLa_A485_30min_R1 6 TSAVSSPLLDQQR 13 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 TSAVS(0.013)S(0.987)PLLDQQR;TSAVS(0.493)S(0.507)PLLDQQR;TSAVS(0.015)S(0.985)PLLDQQR;TSAVS(0.001)S(0.999)PLLDQQR;TSAVS(0.23)S(0.77)PLLDQQR;TSAVS(0.256)S(0.744)PLLDQQR ;;;;; 317.77 1.47E-68 4464500000 3193180 3948020 3779540 4037780 5523710 3480210 5052260 5119210 3418990 5361130 TRUE FALSE FALSE 3903491.875 4409706.596 5177749.126 4258353.697 4973750.037 3662428.414 3972803.378 3863715.721 4105149.932 4024698.955 0.969884187 1.095661227 1.28649352 1.05805521 1.235806726 0.909988164 0.987105724 0.960001174 1.019989315 1 21.94044944 -6.270413385 24.9992121 0.973647501 1.132106255 0.440574113 0.086590359 624.5513684 1739829.988 0.030260491 0.027075742 5.37E-07 6.270413385 0.158458754 TSAVSS(ph)PLLDQQR ddPTM_HeLa_A486_30min_R1 5 TSAVSSPLLDQQR 13 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 TSAVS(0.017)S(0.983)PLLDQQR;TSAVS(0.014)S(0.986)PLLDQQR;TSAVS(0.022)S(0.978)PLLDQQR;TSAVS(0.011)S(0.989)PLLDQQR;TSAVSS(1)PLLDQQR ;;;; 404.27 1.80E-142 6019360000 5116000 5481280 3961070 1747660 5649680 5099000 5980030 5775380 4613290 5651200 TRUE FALSE FALSE 4757394.819 5046923.41 5494902.385 4068640.802 4941044.453 4469937.223 4483763.244 4460452.05 5013173.692 4236102.737 1.123059358 1.191407226 1.297159849 0.960467924 1.1664128 1.055200381 1.058464235 1.052961254 1.183440063 1 22.01430615 -5.256428617 24.99995236 1.073494944 1.202628646 0.41048418 0.074346401 425.2560362 2121703.614 0.019619321 0.032686783 5.54E-06 5.256428617 0.129133702 TSCSGSGERES(ph)PER ddPTM_HeLa_A485_30min_R1 1 TSCSGSGERESPER 14 1 Q9H8Y5;C9JQZ3;C9K022 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 TS(0.001)CS(0.001)GS(0.112)GERES(0.884)PER 137.39 9.83E-05 504010000 171880 217230 216030 228110 302860 225190 312140 302020 198590 328820 TRUE FALSE FALSE 210114.113 242633.1589 295948.4868 240571.0717 272706.195 236980.6002 245448.7391 227949.1215 238445.1914 246851.2255 0.851177111 0.982912515 1.198894136 0.974558952 1.104739077 0.96001387 0.994318495 0.923427141 0.965946962 1 17.91328228 TSCSGSGERES(ph)PER ddPTM_HeLa_A486_30min_R1 2 TSCSGSGERESPER 14 1 Q9H8Y5;C9JQZ3;C9K022 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 TSCSGSGERES(1)PER;TSCSGSGERES(1)PER ; 187.56 7.13E-18 3011300000 965690 952880 697330 345970 939720 907230 1067000 1015500 898030 1176600 TRUE FALSE FALSE 898000.1178 877370.3185 967354.8511 805435.6444 821851.5551 795305.1866 800025.3144 784292.8182 975871.9635 881971.7016 1.018173391 0.994782845 1.096809398 0.913221641 0.931834381 0.901735492 0.907087283 0.889249413 1.106466298 1 19.75037284 -5.276263098 24.97017169 0.940778752 1.032407979 0.260765589 0.065482441 955.43763 1609408.194 0.018181108 0.02710542 5.29E-06 5.276263098 0.091629226 TSCSGSGERES(ph)PERK ddPTM_HeLa_A485_30min_R1 8 TSCSGSGERESPERK 15 2 Q9H8Y5;C9JQZ3;C9K022 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 TSCSGSGERES(1)PERK;TSCSGSGERES(1)PERK;TSCS(0.005)GS(0.02)GERES(0.975)PERK;TSCSGSGERES(1)PERK;TSCS(0.014)GS(0.014)GERES(0.972)PERK;TSCSGSGERES(1)PERK;T(0.001)S(0.001)CS(0.004)GS(0.004)GERES(0.989)PERK;T(0.01)S(0.01)CS(0.046)GS(0.046)GERES(0.889)PERK ;;;;;;; 257.93 1.17E-50 7381341000 3110173.6 2641476 1992561.9 4953914 4111811 3291439 5797368 5521718 2637856 7264281 TRUE FALSE FALSE 3802020.987 2950373.64 2729693.464 5224533.778 3702424.659 3463773.657 4558712.967 4167508.003 3167249.503 5453429.436 0.697179826 0.541012527 0.500546215 0.958027208 0.678916763 0.635155125 0.835935079 0.764199492 0.580781239 1 22.37873234 -14 0.149169234 2.04091646 0.598588437 0.327797669 0.132056668 167.085004 1.482454881 52.12835285 0.701171257 1.00E-14 14 -1.442328023 TSCSGSGERES(ph)PERK ddPTM_HeLa_A486_30min_R1 8 TSCSGSGERESPERK 15 2 Q9H8Y5;C9JQZ3;C9K022 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 TSCSGSGERES(1)PERK;TSCSGSGERES(1)PERK;TS(0.001)CS(0.064)GS(0.214)GERES(0.721)PERK;TSCSGSGERES(1)PERK;TSCSGSGERES(1)PERK;TSCSGSGERES(1)PERK;TSCS(0.001)GS(0.001)GERES(0.999)PERK;T(0.011)S(0.009)CS(0.008)GS(0.008)GERES(0.964)PERK ;;;;;;; 242.9 1.25E-41 10446932000 4263176 3512812 1879075 2516376 3721429 4402943 6093052 5505511 3235516 6786868 TRUE FALSE FALSE 3964349.377 3234443.984 2606703.163 5858250.499 3254652.674 3859752.659 4568505.944 4252026.33 3515973.132 5087392.078 0.779249823 0.635776432 0.512384956 1.151523297 0.63974874 0.758689835 0.898005476 0.835796861 0.691115031 1 22.27849485 -13.99999997 0.050228655 1.849035206 0.340995359 0.156970217 0.164980423 1054.877595 3.908609672 122.1023014 27.06782196 1.00E-14 13.99999997 -1.508039847 TSDGHCPLHPPHALSNSSVDLGS(ph)PSLASHPR ddPTM_HeLa_A485_30min_R1 2 TSDGHCPLHPPHALSNSSVDLGSPSLASHPR 31 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 TSDGHCPLHPPHALSNSSVDLGS(0.998)PS(0.002)LASHPR;TSDGHCPLHPPHALSNSSVDLGS(0.998)PS(0.002)LASHPR ; 212.17 4.36E-30 729490000 224781 392810 362800 122513 542020 301853 362444 404181 344189 223790 TRUE FALSE FALSE 274782.758 438745.7125 497014.8174 129205.575 488054.5857 317657.5563 285004.8785 305054.976 413264.5752 168003.2715 1.635579804 2.611530766 2.958363922 0.769065827 2.905030248 1.890781967 1.696424575 1.815768069 2.459860284 1 17.3581298 -10.90375238 0.325439422 2.70E-20 2.15920512 0.196720616 0.640205709 53.90162605 2.822993932 43.20389504 0.570904904 1.25E-11 10.90375238 2.15920512 TSDGHCPLHPPHALSNSSVDLGS(ph)PSLASHPR ddPTM_HeLa_A486_30min_R1 2 TSDGHCPLHPPHALSNSSVDLGSPSLASHPR 31 0 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 TSDGHCPLHPPHALSNSSVDLGS(0.993)PS(0.007)LASHPR;TSDGHCPLHPPHALSNS(0.012)S(0.003)VDLGS(0.975)PS(0.009)LAS(0.001)HPR ; 205.05 1.39E-29 500200000 353660 329080 282150 36140 422330 266430 300410 290230 341720 129934 TRUE FALSE FALSE 328870.2603 303002.5023 391406.0362 84135.74641 369357.4333 233560.5755 225244.2406 224150.9647 371340.5647 97397.68067 3.376571783 3.110982728 4.01863816 0.863837268 3.792261076 2.398009623 2.312624274 2.301399408 3.812622253 1 16.5715998 -10.89708717 2.591807729 0.001381924 2.84584095 0.27846016 0.909254315 22536535.84 13380151.18 137470905.2 0.220300131 1.27E-11 10.89708717 2.844459026 TSDIFGS(ph)PVTATSR ddPTM_HeLa_A485_30min_R1 6 TSDIFGSPVTATSR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;H3BMV3;Q9H910-2;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(0.974)PVT(0.026)ATSR ;;;;; 343.97 2.32E-82 10830440000 3037810 3560320 3216400 3349430 4866660 3130620 4197830 4294030 2745810 4279120 TRUE FALSE FALSE 3713560.354 3976668.453 4406280.206 3532400.88 4382118.243 3294534.422 3300929.327 3240912.41 3296868.881 3212414.135 1.156002993 1.237906536 1.371641395 1.099609431 1.36411996 1.025563419 1.027554104 1.008871295 1.026290118 1 21.61522646 -6.284968134 23.43950963 1.018828807 1.244277666 0.684576104 0.077444457 204.3957872 203619.4446 0.025973612 0.022924841 5.19E-07 6.284968134 0.225448859 TSDIFGS(ph)PVTATSR ddPTM_HeLa_A486_30min_R1 6 TSDIFGSPVTATSR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;H3BMV3;Q9H910-2;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(1)PVTATSR;TSDIFGS(0.999)PVT(0.001)ATSR ;;;;; 409.95 4.94E-143 12807000000 5471450 5569950 3948320 2047450 5977890 5303360 6168500 6042410 4206220 5820200 TRUE FALSE FALSE 5087929.61 5128566.877 5477215.244 4766567.072 5228087.295 4649085.364 4625076.056 4666685.148 4570818.536 4362784.037 1.166211659 1.175526185 1.255440379 1.09255169 1.198337403 1.065623539 1.060120331 1.06965761 1.047683887 1 22.05681763 -6.347454414 0.884565981 1.033310998 1.191947569 0.694167298 0.042364937 0.334327593 0.556567166 0.026772103 0.022799179 4.49E-07 6.347454414 0.158636571 TSDPDVILCNS(ph)VELIR ddPTM_HeLa_A485_30min_R1 3 TSDPDVILCNSVELIR 16 0 Q96CW6;A0A087X0P9 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 TSDPDVILCNS(1)VELIR;TSDPDVILCNS(1)VELIR;TSDPDVILCNS(1)VELIR ;; 271.64 2.12E-58 507585000 177891 181096 201499 216037 302089 188026 238416 250306 191637 277677 TRUE FALSE FALSE 217462.2392 202273.6019 276041.8652 227838.5543 272011.9585 197870.7506 187476.4739 188918.061 230096.7881 208457.2342 1.043198333 0.970336207 1.324213411 1.092975042 1.304881356 0.949215082 0.899352208 0.906267714 1.103808122 1 17.66939191 -6.301351871 24.72331275 0.961346766 1.144129912 0.369751808 0.114058267 507.102603 314116.9956 0.040762771 0.035949806 5.00E-07 6.301351871 0.182783146 TSDPDVILCNS(ph)VELIR ddPTM_HeLa_A486_30min_R1 3 TSDPDVILCNSVELIR 16 0 Q96CW6;A0A087X0P9 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 TSDPDVILCNS(1)VELIR;TSDPDVILCNS(1)VELIR;TSDPDVILCNS(1)VELIR ;; 227.04 4.70E-34 496398000 169206 232695 187332 87739 246733 212435 258821 259865 187991 222723 TRUE FALSE FALSE 157345.5332 214255.4007 259871.9673 204260.8261 215785.4464 186226.9296 194061.2483 200699.4123 204286.2112 166951.7111 0.942461339 1.283337555 1.556569655 1.223472492 1.292502155 1.115453854 1.162379511 1.202140493 1.223624543 1 17.34907135 -6.25482239 24.42889587 1.154707199 1.275467188 0.128151382 0.150166775 864.6264335 3192069.371 0.051613435 0.050409885 5.56E-07 6.25482239 0.120759989 TSDS(ph)LSR ddPTM_HeLa_A486_30min_R1 1 TSDSLSR 7 0 F5H7T0;F6RJM5;Q96S38-2;Q96S38;A0A087X1U5 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 T(0.139)S(0.093)DS(0.767)LSR 71.692 0.01972 242780000 342850 245280 303470 131180 341630 383400 377920 304910 297320 359830 TRUE FALSE FALSE 318817.9855 225843.1195 420981.7112 305393.6695 298779.5798 336100.0061 283360.4188 235488.6491 323091.937 269726.2259 1.182005882 0.837305007 1.560774114 1.132235727 1.107714234 1.246078334 1.050548265 0.873065451 1.197851399 1 18.04113628 -6.904391141 6.469871662 1.014261733 1.173785056 0.137097795 0.181196405 0.428566609 24.35442271 0.075670742 0.050750876 1.25E-07 6.904391141 0.159523323 TSDS(ph)TPDPQRVPLR ddPTM_HeLa_A485_30min_R1 2 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 TSDS(0.5)T(0.5)PDPQRVPLR;TSDS(0.5)T(0.5)PDPQRVPLR ; 154.69 1.50E-08 1626610000 886020 1073850 959820 1041700 1518680 1038370 1523450 1621360 964230 1418230 TRUE FALSE FALSE 1083112.092 1199427.416 1314897.359 1098605.433 1367474.887 1092737.448 1197952.462 1223718.918 1157742.117 1064691.362 1.017301475 1.126549402 1.235003314 1.03185343 1.284386195 1.026341987 1.125164067 1.149364935 1.087396929 1 20.02200384 -8.073791618 4.582962765 1.000027952 1.12701375 0.172344819 0.082568317 0.61266082 32.22904597 0.07495847 0.01958638 8.44E-09 8.073791618 0.126985798 TSDS(ph)TPDPQRVPLR ddPTM_HeLa_A486_30min_R1 2 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 T(0.003)S(0.003)DS(0.497)T(0.497)PDPQRVPLR;T(0.002)S(0.002)DS(0.498)T(0.498)PDPQRVPLR ; 112.5 0.00011264 1336020000 1134600 1101520 825970 430850 1242960 1049130 1339080 1289440 879390 1320180 TRUE FALSE FALSE 1055070.399 1014231.544 1145807.704 1003040.574 1087056.367 919699.0074 1004028.021 995862.6603 955616.2333 989598.3351 1.066160241 1.024892128 1.157851285 1.01358353 1.098482413 0.929365961 1.014581356 1.00633017 0.965660712 1 19.91648355 -6.249272379 24.98392334 0.985545381 1.071068653 0.51286575 0.043334981 648.1396753 1330901.975 0.013777351 0.013679126 5.63E-07 6.249272379 0.085523272 TSDST(ph)PDPQRVPLR ddPTM_HeLa_A485_30min_R1 1 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 T(0.001)S(0.001)DS(0.465)T(0.533)PDPQRVPLR 141.55 1.29E-07 278910000 350280 475960 390590 425890 627570 450910 624080 604530 382260 584630 TRUE FALSE FALSE 428198.5775 531619.3817 535085.4948 449155.2923 565086.9273 474518.9504 490740.2097 456268.0696 458976.0757 438892.5003 0.975634301 1.2112747 1.219172108 1.023383384 1.28752924 1.081173522 1.118133049 1.039589579 1.045759669 1 18.74350809 -7.243408966 1.380645128 1.015379856 1.143817521 0.224138333 0.088242561 0.651537366 2.217004997 0.069874667 0.027135896 5.71E-08 7.243408966 0.128437665 TSDST(ph)PDPQRVPLR ddPTM_HeLa_A486_30min_R1 1 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 TSDS(0.157)T(0.843)PDPQRVPLR 120.7 8.95E-05 683250000 568930 582510 416550 200500 635680 534980 725530 618920 410200 694760 TRUE FALSE FALSE 529050.945 536349.7861 577849.3156 466774.1327 555947.0869 468979.6069 543994.7201 478005.4269 445756.4663 520787.5739 1.015867067 1.029882073 1.109568171 0.896285081 1.067512197 0.900519963 1.044561636 0.91785106 0.855927615 1 18.9903355 -6.05363157 0.693821792 0.932428714 1.042876764 0.214125617 0.071596068 1.128265294 1.20833702 0.048418638 0.062004375 8.84E-07 6.05363157 0.11044805 TSEIEPKNS(ph)PEDLGLSLTGDSCK ddPTM_HeLa_A485_30min_R1 4 TSEIEPKNSPEDLGLSLTGDSCK 23 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSEIEPKNS(1)PEDLGLSLTGDSCK;TSEIEPKNS(1)PEDLGLSLTGDSCK;TSEIEPKNS(1)PEDLGLSLTGDSCK;TSEIEPKNS(1)PEDLGLSLTGDSCK ;;; 260.82 1.56E-61 1075500000 575840 645040 360299 984990 1459360 1095460 2558540 3378320 616160 1777610 TRUE FALSE FALSE 703933.6214 720471.8169 493588.5934 1038797.51 1314060.994 1152816.592 2011887.028 2549781.723 739817.6602 1334484.541 0.527494774 0.53988772 0.369872095 0.778426034 0.984695554 0.863866576 1.507613588 1.910686594 0.554384586 1 20.34785116 -5.919394609 1.224640215 1.278048987 0.482399284 0.421975908 0.347800085 0.406973531 1.284478823 0.150885439 0.186378203 1.20E-06 5.919394609 -0.795649703 TSEIEPKNS(ph)PEDLGLSLTGDSCK ddPTM_HeLa_A486_30min_R1 2 TSEIEPKNSPEDLGLSLTGDSCK 23 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSEIEPKNS(1)PEDLGLSLTGDSCK;TSEIEPKNS(1)PEDLGLSLTGDSCK ; 284.27 1.60E-75 853460000 559840 375290 220788 820210 848840 721480 1558170 1561440 356630 1332690 TRUE FALSE FALSE 520598.107 345550.6536 306283.0265 1909490.331 742370.5721 632471.1331 1168299.385 1205934.198 387542.9755 998975.7496 0.521131877 0.345904947 0.306597059 1.911448133 0.743131725 0.633119606 1.169497243 1.207170643 0.387940324 1 19.93009013 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_A485_30min_R1 1 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPR 39 1 A0A0A0MTL5;Q13309-2;Q13309;D6RF40;D6RAG5;D6R9R7 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 1 0 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(1)PPR 312.17 2.19E-111 148420000 25206 7598.4 34564 93937 177080 33635 126850 107340 73140 202840 TRUE FALSE FALSE 30812.98774 8486.966783 47350.66193 99068.54045 159449.2934 35396.07659 99747.46123 81014.6967 87818.52712 152275.721 0.202349971 0.055734208 0.310953457 0.650586579 1.047109102 0.232447276 0.655045076 0.532026354 0.576707347 1 17.21632641 -5.113502482 3.365230275 0.647554265 0.135734728 0.506847207 0.220882436 0.20701505 4.348582145 0.061106008 0.117812351 7.70E-06 5.113502482 -0.511819537 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_A486_30min_R1 3 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPR 39 1 A0A0A0MTL5;Q13309-2;Q13309;D6RF40;D6RAG5;D6R9R7 A0A0A0MTL5 SKP2 S-phase kinase-associated protein 2 1 0 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(1)PPR;TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(1)PPR;TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(1)PPR ;; 132.34 1.49E-06 189633000 23047 38905.5 36658.2 23739.9 98344 70612 117386 114744 40147.8 42658.1 TRUE FALSE FALSE 21431.52431 35822.48649 50853.23678 55267.68695 86008.7785 61900.60937 88014.78122 88619.29604 43627.84363 31976.2341 0.670232906 1.120284721 1.590344773 1.728398872 2.68977198 1.935831755 2.752506156 2.771411285 1.36438342 1 14.96471242 -4.853517471 1.259598329 2.189410098 0.624171354 0.391903633 0.565779932 0.555738575 1.447011039 0.176405398 0.869961786 1.40E-05 4.853517471 -1.565238745 TSES(ph)PSKPGEK ddPTM_HeLa_A485_30min_R1 7 TSESPSKPGEK 11 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 TSES(1)PSKPGEK;TSES(1)PSKPGEK;TSES(1)PSKPGEK;TSES(1)PSKPGEK;TSES(0.915)PS(0.085)KPGEK;TSES(1)PSKPGEK;T(0.012)S(0.038)ES(0.93)PS(0.02)KPGEK ;;;;;; 207.4 3.10E-15 36061420000 5502830 3276221 1891441 10219900 4874890 4114082 9385460 7958750 3223377 13096070 TRUE FALSE FALSE 6726915.549 3659346.547 2591163.735 10778187.26 4389528.835 4329488.972 7380179.799 6006854.084 3870279.197 9831460.764 0.684223404 0.372207817 0.263558366 1.096295608 0.446477786 0.440370874 0.75066971 0.610982867 0.39366268 1 23.22897436 -11.02161348 2.450948738 1.493249155 0.563409128 0.249214307 0.228032348 30062117.95 11218616.72 83406534.88 0.056959103 9.51E-12 11.02161348 -0.929840027 TSES(ph)PSKPGEK ddPTM_HeLa_A486_30min_R1 6 TSESPSKPGEK 11 1 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 TSES(1)PSKPGEK;TSES(1)PSKPGEK;TSES(1)PSKPGEK;TSES(1)PSKPGEK;TS(0.002)ES(0.998)PSKPGEK;TS(0.002)ES(0.99)PS(0.007)KPGEK ;;;;; 187.16 5.81E-11 40212530000 5957350 3911980 1433162 3643510 3264750 5755310 8705590 7050370 3278790 10248690 TRUE FALSE FALSE 5539770.529 3601980.458 1988120.708 8482275.413 2855254.612 5045278.368 6527359.304 5445154.659 3562998.157 7682351.316 0.721103514 0.468864324 0.258790652 1.104124904 0.371664155 0.65673622 0.849656444 0.70878751 0.463790057 1 22.87311651 -14 0.177275505 2.462285341 0.546673005 0.179897376 0.235119692 232.3375083 2.224430485 120.322946 0.755361765 1.00E-14 14 -1.915612336 TSES(ph)PSKPGEKK ddPTM_HeLa_A485_30min_R1 3 TSESPSKPGEKK 12 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 T(0.232)S(0.177)ES(0.549)PS(0.042)KPGEKK;T(0.014)S(0.012)ES(0.745)PS(0.23)KPGEKK;TSES(0.998)PS(0.002)KPGEKK ;; 130.72 1.26E-05 1554630000 1896900 1346220 607030 3446210 1291930 2053490 3563100 4444100 1374660 4765960 TRUE FALSE FALSE 2318858.861 1503648.718 831595.6576 3634467.726 1163300.913 2161007.561 2801814.577 3354177.507 1650541.653 3577893.883 0.648107221 0.420260848 0.232426026 1.015812052 0.325135667 0.603988724 0.783090463 0.937472607 0.461316547 1 21.77067917 -8.045868166 0.160499694 1.208871278 0.313029757 0.239413984 0.235076067 8.724018206 0.998954395 2.825476497 1.893956134 9.00E-09 8.045868166 -0.895841521 TSES(ph)PSKPGEKK ddPTM_HeLa_A486_30min_R1 1 TSESPSKPGEKK 12 2 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 T(0.001)S(0.004)ES(0.971)PS(0.024)KPGEKK 104.09 0.00044714 123410000 488730 136530 108480 359710 170820 558600 575430 426340 250960 927490 TRUE FALSE FALSE 454472.5508 125710.8656 150486.3612 837423.0587 149394.1628 489685.6114 431451.3277 329271.6889 272713.4149 695240.4671 0.653691165 0.180816382 0.216452247 1.20450851 0.214881282 0.704339915 0.62057856 0.473608348 0.392257683 1 19.40715253 -10.84862257 2.345094205 1.212984225 0.517605507 0.197630172 0.291416927 15686862.64 8782677.986 18694430.6 0.074389049 1.42E-11 10.84862257 -0.695378717 TSFFQALGITTK ddPTM_HeLa_A486_30min_R1 1 TSFFQALGITTK 12 0 F8VWS0;P05388-2;P05388;Q8NHW5;F8VW21;F8VU65;F8VPE8;G3V210 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 0 180.2 7.63E-09 22755000 36927 38501 22189 18478 37517 39541 53663 45053 34691 48879 FALSE FALSE TRUE 34338.60799 35450.04054 30781.17504 43017.71783 32811.26803 34662.83344 40235.94981 34795.4154 37698.04381 36639.38025 0.937204935 0.967539306 0.840111782 1.17408421 0.895519187 0.946054033 1.09816131 0.949672597 1.028894145 1 15.16110748 -5.173897463 20.62188517 1.007052024 0.920214662 0.234206935 0.080702269 25.72990753 6057.88777 0.02119522 0.036711455 6.70E-06 5.173897463 -0.086837362 TSFSVGS(ph)DDELGPIR ddPTM_HeLa_A485_30min_R1 6 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFS(0.001)VGS(0.999)DDELGPIR ;;;;; 439.77 3.23E-192 5514910000 2814310 3366980 3225730 3194170 4341520 3088820 4602630 4413900 2834880 4612400 TRUE FALSE FALSE 3440343.55 3760719.022 4419061.761 3368659.419 3909263.025 3250545.839 3619240.5 3331384.104 3403814.413 3462613.565 0.993568438 1.086092615 1.276221466 0.972866119 1.128992003 0.938755012 1.045233732 0.962101038 0.983018852 1 21.72342996 -6.256751374 24.78852538 0.987166292 1.09491123 0.297594005 0.081119478 464.1469812 2454249.927 0.027137255 0.026280627 5.54E-07 6.256751374 0.107744939 TSFSVGS(ph)DDELGPIR ddPTM_HeLa_A486_30min_R1 5 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR ;;;; 447.77 1.64E-192 6836220000 2408910 2511530 1937800 969958 2726370 2454040 3001940 2931940 2195040 2716840 TRUE FALSE FALSE 2240057.849 2312507.216 2688168.056 2258111.243 2384403.252 2151285.496 2250822.861 2264401.266 2385307.835 2036525.58 1.099940934 1.135515919 1.319977555 1.108805735 1.170819201 1.056350834 1.105226903 1.11189434 1.17126338 1 20.95767851 -5.979998503 2.243166935 1.097957998 1.176789094 0.210389538 0.071126006 0.522629014 5.304987396 0.025395334 0.028131434 1.05E-06 5.979998503 0.078831095 TSFSVGS(ph)DDELGPIRK ddPTM_HeLa_A485_30min_R1 3 TSFSVGSDDELGPIRK 16 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 TSFSVGS(1)DDELGPIRK;TSFSVGS(1)DDELGPIRK;TSFSVGS(1)DDELGPIRK ;; 209.66 8.83E-26 1177150000 554260 646400 450950 632360 710160 623840 964580 965800 444380 824440 TRUE FALSE FALSE 677553.2248 721990.8571 617775.1706 666904.2256 639453.9769 656503.2978 758489.6031 728936.0357 533562.9899 618922.2807 1.094730705 1.16652911 0.998146601 1.077524992 1.033173303 1.060720091 1.225500562 1.177750516 0.862083991 1 19.23939873 -7.762793601 24.99966401 0.931041979 1.102127412 0.477272751 0.072483838 32.97221368 608576.1136 0.061644633 0.01924267 1.73E-08 7.762793601 0.171085432 TSFSVGS(ph)DDELGPIRK ddPTM_HeLa_A486_30min_R1 4 TSFSVGSDDELGPIRK 16 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 TSFSVGS(1)DDELGPIRK;TSFSVGS(1)DDELGPIRK;TSFSVGS(1)DDELGPIRK;TSFSVGS(1)DDELGPIRK ;;; 248.13 3.85E-42 1321420000 766390 721450 500400 298489 796240 801960 944330 919170 678140 1004920 TRUE FALSE FALSE 712670.0186 664279.6745 694168.2812 694897.4768 696368.1546 703022.3289 708048.6459 709895.0563 736921.7212 753281.4911 0.946087256 0.881847865 0.921525737 0.922493762 0.924446124 0.933279707 0.939952268 0.942403424 0.978281997 1 19.52282956 -7.678133129 0.591226313 1.002113266 0.914614951 0.745420791 0.015482212 0.358091164 0.295508692 0.014898834 0.007301286 2.10E-08 7.678133129 -0.087498314 TSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_HeLa_A485_30min_R1 2 TSGGDHAPDSPSGENSPAPQGR 22 0 E9PL60;E9PII7;H0YDE3;H0YDU2;E9PRI1;Q96NY9 E9PL60 MUS81 Crossover junction endonuclease MUS81 1 0 TSGGDHAPDS(1)PSGENSPAPQGR;TSGGDHAPDS(1)PSGENSPAPQGR ; 276.46 4.34E-73 2008090000 621020 794590 773840 563300 1123230 725810 1038860 935340 787820 1061060 TRUE FALSE FALSE 759163.7565 887510.3885 1060115.618 594071.6526 1011397.277 763812.2893 816899.0743 705946.3984 945928.2477 796557.2694 0.95305609 1.114182775 1.330871814 0.745799047 1.269710686 0.95889187 1.025537153 0.886246885 1.187520702 1 19.60341856 TSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_HeLa_A486_30min_R1 2 TSGGDHAPDSPSGENSPAPQGR 22 0 E9PL60;E9PII7;H0YDE3;H0YDU2;E9PRI1;Q96NY9 E9PL60 MUS81 Crossover junction endonuclease MUS81 1 0 TSGGDHAPDS(1)PSGENSPAPQGR;TSGGDHAPDS(1)PSGENSPAPQGR ; 262.93 1.57E-59 2184700000 1387300 1544640 1210440 156178 1714450 1458220 1650580 1551370 1510880 1204290 TRUE FALSE FALSE 1290057.434 1422237.101 1679154.785 363590.2768 1499407.694 1278319.642 1237587.426 1198156.917 1641844.295 902727.9454 1.429065579 1.575488062 1.860089513 0.402768385 1.660974053 1.416063 1.370941746 1.327262464 1.818758689 1 19.78393174 -10.46473552 3.190481182 0.991840681 1.417582991 0.099949181 0.384869229 57226971.66 73320572.89 4173011.468 0.097164109 3.43E-11 10.46473552 0.42574231 TSGHDHPDVATMLNILALVYR ddPTM_HeLa_A485_30min_R1 1 TSGHDHPDVATMLNILALVYR 21 0 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;A8MX29;E9PQ02;Q9H0B6;Q9H0B6-2;A8MZ87 Q07866-4;Q9H0B6 KLC1;KLC2 Kinesin light chain 1;Kinesin light chain 2 0 0 133.47 2.86E-09 7853500 5884.2 7674.5 6597.4 3735.6 7898.4 4338.8 8423.3 9063 5117.9 6883.1 FALSE FALSE TRUE 7193.11999 8571.966016 9038.052801 3939.666369 7112.007563 4565.972859 6623.593143 6840.28504 6145.015586 5167.269844 1.392054258 1.65889653 1.749096346 0.762427063 1.376356911 0.883633523 1.281836123 1.323771594 1.189219021 1 12.33518651 -5.242476166 24.99881757 1.1382221 1.605903818 0.543859462 0.202125998 632.4794042 833783.6014 0.053129844 0.091828663 5.72E-06 5.242476166 0.467681718 TSGVPGNRPGS(ph)VIR ddPTM_HeLa_A486_30min_R1 1 TSGVPGNRPGSVIR 14 1 O60271;A0A087X2D8;O60271-4;O60271-2;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 TSGVPGNRPGS(1)VIR 53.278 0.022281 165870000 164060 162860 112420 64192 187600 184470 238860 244740 139980 214340 TRUE FALSE FALSE 152560.2412 149954.3805 155952.0347 149442.2201 164069.4587 161711.967 179094.7016 189018.0446 152113.5791 160667.8689 0.949537965 0.933319036 0.970648555 0.930131339 1.021171562 1.006498487 1.114688972 1.176452056 0.946757931 1 17.29372192 -6.127199964 1.696134051 1.069651104 0.946566459 0.37121662 0.061477492 0.350269465 2.009346022 0.024584721 0.024727247 7.46E-07 6.127199964 -0.123084645 TSISDPPES(ph)PPLLPPREPVR ddPTM_HeLa_A486_30min_R1 1 TSISDPPESPPLLPPREPVR 20 1 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 T(0.002)S(0.003)IS(0.009)DPPES(0.987)PPLLPPREPVR 46.403 0.024099 316850000 314050 317260 362090 103630 391190 302450 318480 346080 299230 350560 TRUE FALSE FALSE 292036.7168 292119.1622 502300.9451 241255.8772 342123.3025 265136.7941 238792.9355 267285.1389 325167.4973 262777.4942 1.111345999 1.111659745 1.911506716 0.918099466 1.301950548 1.008978318 0.908726739 1.017153846 1.237425215 1 18.00348219 TSKEPPSS(ph)PLQPQK ddPTM_HeLa_A485_30min_R1 2 TSKEPPSSPLQPQK 14 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 TSKEPPS(0.247)S(0.753)PLQPQK;TSKEPPS(0.021)S(0.979)PLQPQK ; 183.74 1.00E-17 849770000 976650 817770 559520 1356120 1388930 1050770 1764130 1576070 859580 1997790 TRUE FALSE FALSE 1193902.423 913401.0878 766509.7316 1430201.402 1250643.252 1105786.692 1387209.214 1189536.361 1032089.821 1499777.72 0.796052913 0.609024308 0.511082223 0.953608914 0.833885739 0.737300387 0.924943207 0.793141774 0.688161858 1 20.51631727 -5.262792655 24.99962668 0.83676653 0.635750266 0.422222623 0.111316701 120.3875093 2223984.928 0.030675869 0.048432539 5.46E-06 5.262792655 -0.201016263 TSKEPPSS(ph)PLQPQK ddPTM_HeLa_A486_30min_R1 3 TSKEPPSSPLQPQK 14 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 TSKEPPS(0.207)S(0.793)PLQPQK;TSKEPPS(0.204)S(0.796)PLQPQK;TSKEPPS(0.002)S(0.998)PLQPQK ;; 199.01 4.52E-22 1859450000 2395500 1838050 880080 1105760 1987230 2241850 3008180 2931070 1528850 3206320 TRUE FALSE FALSE 2227587.82 1692396.224 1220870.545 2574265.162 1737973.083 1965273.34 2255501.547 2263729.346 1661371.949 2403436.602 0.926834441 0.704156799 0.507968691 1.07107679 0.723120003 0.817693023 0.93844853 0.941871878 0.691248501 1 21.19666732 -5.262916527 24.99977999 0.873812894 0.712103671 0.222560601 0.145147219 210.3467546 3560005.694 0.039763895 0.062755755 5.46E-06 5.262916527 -0.161709223 TSLDIEEYS(ph)DTEVQK ddPTM_HeLa_A485_30min_R1 2 TSLDIEEYSDTEVQK 15 0 P51580 P51580 TPMT Thiopurine S-methyltransferase 1 0 TSLDIEEYS(1)DTEVQK;TSLDIEEYS(1)DTEVQK ; 423.84 2.41E-171 575910000 452260 422480 365840 611890 657880 443910 704660 675990 415910 868640 TRUE FALSE FALSE 552863.6767 471885.3609 501179.4399 645316.0013 592379.1572 467152.4412 554103.6345 510202.3926 499379.322 652104.0341 0.847815146 0.723635089 0.76855749 0.989590568 0.908412042 0.716377168 0.849716618 0.782394167 0.765797014 1 19.31474262 TSLDIEEYS(ph)DTEVQK ddPTM_HeLa_A486_30min_R1 2 TSLDIEEYSDTEVQK 15 0 P51580 P51580 TPMT Thiopurine S-methyltransferase 1 0 TSLDIEEYS(0.999)DTEVQK;TSLDIEEYS(1)DTEVQK ; 283.1 1.46E-58 538750000 714410 646670 351780 392850 641800 821910 950070 946470 551260 1110570 TRUE FALSE FALSE 664333.5482 595425.5141 487998.637 914574.6535 561299.4595 720511.1008 712352.4372 730979.4423 599043.6607 832476.0434 0.798021221 0.715246425 0.586201418 1.098619787 0.674252988 0.865503706 0.855703228 0.878078652 0.719592672 1 19.66704923 -14 0.07258604 1.603419542 0.589890298 0.17044277 0.133295151 529.5471632 2.750469483 54.17783776 6.249954859 1.00E-14 14 -1.013529245 TSLGSDSSTQAKDAHLS(ph)PK ddPTM_HeLa_A486_30min_R1 1 TSLGSDSSTQAKDAHLSPK 19 1 O60503 O60503 ADCY9 Adenylate cyclase type 9 1 0 TSLGS(0.004)DS(0.004)S(0.004)T(0.004)QAKDAHLS(0.985)PK 63.869 0.0064738 1306600000 488910 444190 159420 44956 404590 662640 881750 748580 351870 869710 TRUE FALSE FALSE 454639.9337 408990.7667 221151.6934 104659.84 353842.5495 580890.214 661126.8238 578144.6754 382370.3749 651928.9551 0.697376501 0.627354811 0.339226677 0.16053872 0.542762439 0.891033002 1.014108698 0.886821594 0.58652154 1 19.31435523 -6.194570538 4.488844102 0.877961469 0.450021197 0.568134171 0.176048683 0.177471264 7.076795112 0.06471384 0.06395743 6.39E-07 6.194570538 -0.427940272 TSLPLS(ph)PVK ddPTM_HeLa_A485_30min_R1 3 TSLPLSPVK 9 0 Q86XL3;Q86XL3-2 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 TS(0.001)LPLS(0.999)PVK;TSLPLS(1)PVK;TSLPLS(1)PVK ;; 119.45 0.00048894 494050000 1990430 1396720 930020 2451080 1874310 1444490 2324640 1943530 1240960 4076700 TRUE FALSE FALSE 2433194.287 1560054.254 1274073.099 2584976.294 1687697.115 1520121.263 1827961.673 1466876.22 1490009.289 3060453.716 0.795043648 0.50974607 0.416302032 0.844638258 0.551453239 0.496698007 0.597284535 0.479300246 0.486858952 1 21.54531412 -10.89115578 2.624056016 1.221983843 0.571394039 0.481337701 0.132215905 19615158.6 11811060.65 26968136.2 0.033916343 1.28E-11 10.89115578 -0.650589804 TSLPLS(ph)PVK ddPTM_HeLa_A486_30min_R1 2 TSLPLSPVK 9 0 Q86XL3;Q86XL3-2 Q86XL3 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 TSLPLS(1)PVK;TSLPLS(1)PVK ; 121.68 0.00038205 470560000 1891020 1557030 831210 765250 1400780 1898370 2234600 2018580 1397730 2683800 TRUE FALSE FALSE 1758469.263 1433645.272 1153076.773 1781540.674 1225081.111 1664168.411 1675479.445 1558993.399 1518886.362 2011759.011 0.874095383 0.712632708 0.573168439 0.88556366 0.608960171 0.827220557 0.832843017 0.774940433 0.75500413 1 20.94002606 -13.12050832 0.236150581 1.854496232 0.729230508 0.346535912 0.099151625 116.1991777 1.697128736 47.49204216 0.161602863 7.58E-14 13.12050832 -1.125265724 TSLS(ph)FQDPK ddPTM_HeLa_A485_30min_R1 3 TSLSFQDPK 9 0 P48681 P48681 NES Nestin 1 0 TS(0.01)LS(0.989)FQDPK;T(0.004)S(0.011)LS(0.985)FQDPK;T(0.027)S(0.017)LS(0.957)FQDPK ;; 99.5 0.0020128 582610000 1886370 1552230 1142340 2589900 2138480 1633830 2574450 2350130 1411460 3439060 TRUE FALSE FALSE 2305986.499 1733749.796 1564939.103 2731379.679 1925565.423 1719374.812 2024397.726 1773756.933 1694727.075 2581765.633 0.893181964 0.671536476 0.606150722 1.057950282 0.745832773 0.665968588 0.78411367 0.687032514 0.656421735 1 21.29992661 -10.10719031 4.868444613 1.000011224 0.750680918 0.253269615 0.127721249 1.56E-05 2.86E-06 0.12400113 0.030073338 7.81E-11 10.10719031 -0.249330307 TSLS(ph)FQDPK ddPTM_HeLa_A486_30min_R1 4 TSLSFQDPK 9 0 P48681 P48681 NES Nestin 1 0 TSLS(1)FQDPK;T(0.034)S(0.034)LS(0.931)FQDPK;TS(0.008)LS(0.992)FQDPK;TSLS(1)FQDPK ;;; 121.02 0.0004136 891730000 2733030 2752570 1328950 1437410 2222560 3145570 3994660 3388210 2119740 4286760 TRUE FALSE FALSE 2541458.71 2534446.329 1843555.031 3346363.123 1943785.8 2757501.555 2995153.817 2616788.547 2303480.77 3213327.394 0.790911849 0.788729568 0.573721506 1.041401237 0.604913712 0.858145224 0.932103533 0.814354788 0.716852187 1 21.61563655 TSLS(ph)PTSK ddPTM_HeLa_A485_30min_R1 1 TSLSPTSK 8 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 TSLS(0.741)PT(0.075)S(0.185)K 93.843 0.0032988 336930000 694460 636790 459970 1041200 822330 733380 1137300 1022900 594730 1317400 TRUE FALSE FALSE 848940.2311 711257.0512 630132.0439 1098078.12 740455.9378 771778.6428 894306.5641 772032.1712 714086.8558 988996.425 0.858385541 0.719170498 0.637142894 1.110295338 0.748694251 0.780365453 0.90425662 0.780621802 0.722031787 1 19.91560578 -11.44504135 2.196195098 2.825421876 0.807748221 0.180342851 0.123565896 6583073.265 669381.5068 59659780.03 0.031620668 3.59E-12 11.44504135 -2.017673655 TSLS(ph)PTSK ddPTM_HeLa_A486_30min_R1 1 TSLSPTSK 8 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 TSLS(0.986)PT(0.013)S(0.001)K 107.95 0.0013203 238200000 548600 483710 275940 211430 511960 587780 698730 682970 425420 787040 TRUE FALSE FALSE 510145.973 445379.058 382791.3579 492219.7251 447745.203 515265.6797 523900.3636 527472.6401 462295.7481 589960.0612 0.864712726 0.754930863 0.648842834 0.834327198 0.758941549 0.873390783 0.888026831 0.894081947 0.78360516 1 19.17025777 -6.286724304 6.074082406 0.881804819 0.767819499 0.388340778 0.072162076 0.203126144 26.95431838 0.025036166 0.022630709 5.17E-07 6.286724304 -0.11398532 TSLVQLLAHLTGHTLK ddPTM_HeLa_A486_30min_R1 2 TSLVQLLAHLTGHTLK 16 0 Q9NU22 Q9NU22 MDN1 Midasin 0 0 ; ; 161.24 1.86E-10 6583400 27469 23398 13599.7 7733.5 18896.8 19631.6 29931 25078 22420.9 26924 FALSE FALSE TRUE 25543.56495 21543.85727 18865.86805 18003.97883 16526.58714 17209.65279 22441.94722 19368.28685 24364.36166 20182.05515 1.265657276 1.067475889 0.934784288 0.892078566 0.818875333 0.852720531 1.111975319 0.95967862 1.20722897 1 14.30078547 -9.831238807 14.15757323 0.999996964 0.999088615 0 0.142422355 0 0 0.144979571 0.035162711 1.47E-10 9.831238807 -0.000908348 TSNERPGS(ph)GQGQGR ddPTM_HeLa_A486_30min_R1 1 TSNERPGSGQGQGR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 TSNERPGS(1)GQGQGR 97.32 0.0004306 175950000 92371 84822 109280 34270 107790 90325 82015 91013 102730 92095 TRUE FALSE FALSE 85896.2699 78100.3958 151596.1426 79782.29191 94269.9731 79181.61986 61493.97953 70291.3267 111634.7191 69033.81256 1.244263741 1.131335398 2.195969439 1.155698765 1.365562318 1.146997637 0.890780579 1.018215916 1.61710204 1 16.07501554 -5.860784485 1.993162744 1.129349296 1.480321546 0.158834503 0.332558399 0.60034471 4.892189035 0.119335361 0.144420308 1.38E-06 5.860784485 0.35097225 TSNKFGS(ph)LEK ddPTM_HeLa_A485_30min_R1 1 TSNKFGSLEK 10 1 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 TS(0.002)NKFGS(0.998)LEK 48.527 0.025522 230960000 267560 224220 138360 435450 302410 272410 494770 464550 189700 655770 TRUE FALSE FALSE 327077.7989 250440.5785 189545.1216 459237.5309 272300.9986 286672.9664 389058.3476 350618.3841 227771.05 492298.6076 0.664389039 0.508716813 0.385020633 0.932843449 0.55312161 0.582315209 0.790289352 0.712206735 0.462668483 1 18.90917413 -14 0.292798453 3.934519681 0.604282454 0.340333871 0.155096808 299.9281148 2.818578184 538.9589473 0.164943785 1.00E-14 14 -3.330237226 TSNKFGS(ph)LEKR ddPTM_HeLa_A486_30min_R1 1 TSNKFGSLEKR 11 2 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 0 TS(0.005)NKFGS(0.995)LEKR 63.894 0.015733 200560000 347480 230260 98876 167320 267450 295450 476550 421630 212300 611600 TRUE FALSE FALSE 323123.4464 212013.359 137163.4352 389529.4159 233903.9271 259000.3829 357312.1496 325634.0531 230702.3349 458451.3792 0.704815082 0.462455494 0.299188619 0.849663527 0.510204436 0.56494624 0.779389409 0.710291359 0.503220942 1 18.80640921 -14 0.167710898 2.544598866 0.500320704 0.37256237 0.156623115 141.3701488 1.325294888 72.6312185 0.590161296 1.00E-14 14 -2.044278162 TSNRYS(ph)PESQAQSVHHQRPGSR ddPTM_HeLa_A485_30min_R1 4 TSNRYSPESQAQSVHHQRPGSR 22 2 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 T(0.002)S(0.002)NRYS(0.994)PES(0.001)QAQSVHHQRPGSR;T(0.006)S(0.006)NRYS(0.962)PES(0.026)QAQSVHHQRPGSR;TSNRYS(0.994)PES(0.005)QAQSVHHQRPGSR;T(0.071)S(0.071)NRYS(0.858)PESQAQSVHHQRPGSR ;;; 207.97 1.69E-27 3335690000 248179 427906 495160 126086 632399 269955 407939 333593 369318 311255 TRUE FALSE FALSE 303385.5623 477945.8844 678340.2893 132973.7589 569435.1351 284089.4264 320779.5001 251778.7937 443436.735 233664.8567 1.298379083 2.045433323 2.903047976 0.569078983 2.436973805 1.215798689 1.372818765 1.077521015 1.897746804 1 17.83408124 -6.131593584 1.021982868 1.310675834 1.917215923 0.113622871 0.643252538 1.14392575 2.54469402 0.334480244 0.345297178 7.39E-07 6.131593584 0.606540089 TSNRYS(ph)PESQAQSVHHQRPGSR ddPTM_HeLa_A486_30min_R1 4 TSNRYSPESQAQSVHHQRPGSR 22 2 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 T(0.02)S(0.02)NRYS(0.95)PES(0.01)QAQSVHHQRPGSR;T(0.011)S(0.011)NRY(0.001)S(0.975)PES(0.003)QAQSVHHQRPGSR;T(0.015)S(0.015)NRYS(0.969)PESQAQSVHHQRPGSR;T(0.066)S(0.066)NRYS(0.837)PES(0.031)QAQSVHHQRPGSR ;;; 181.05 7.75E-20 2570600000 275729 259554 246468 7014 303956 193394 207554 198303 251482 92310 TRUE FALSE FALSE 256401.821 238985.9958 341907.0102 16328.94647 265831.0042 169535.0146 155621.7939 153153.7358 273280.6622 69194.97516 3.705497695 3.453805644 4.941211547 0.23598457 3.841767463 2.450105866 2.249033164 2.213364995 3.949429299 1 16.07837965 -5.226881651 24.99920027 2.398887444 3.975534815 0.338127984 1.116166457 760.9876346 550500.6836 0.287112506 0.49726421 5.93E-06 5.226881651 1.576647371 TSNS(ph)LTEDSK ddPTM_HeLa_A485_30min_R1 3 TSNSLTEDSK 10 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSNS(0.974)LT(0.026)EDSK;TSNS(0.977)LT(0.023)EDSK;TSNS(0.986)LT(0.014)EDSK ;; 218.56 2.73E-21 929880000 1755100 1490560 1164830 2784840 2242570 1697780 2918060 2755200 1490700 3652990 TRUE FALSE FALSE 2145515.94 1664868.026 1595749.09 2936968.758 2019291.857 1786673.136 2294592.643 2079482.88 1789869.816 2742366.821 0.78235921 0.60709166 0.581887542 1.070961308 0.736331785 0.651507713 0.836719809 0.758280353 0.652673378 1 21.38699013 -11.37174488 2.224577648 2.7229881 0.743418191 0.250585067 0.133841859 18714741.69 2364748.691 161706611.1 0.035314598 4.25E-12 11.37174488 -1.979569909 TSNS(ph)LTEDSK ddPTM_HeLa_A486_30min_R1 5 TSNSLTEDSK 10 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSNS(0.998)LT(0.002)EDSK;TSNS(0.975)LT(0.025)EDSK;TSNS(0.965)LT(0.035)EDSK;TSNS(0.976)LT(0.024)EDSK;TSNS(0.83)LT(0.169)EDSK ;;;; 219.97 6.17E-17 2664750000 3719450 3584690 1751270 2017000 3562170 4360290 5671000 5186300 3009050 6398600 TRUE FALSE FALSE 3458735.762 3300626.109 2429408.645 4695677.934 3115369.423 3822361.752 4252055.818 4005492.706 3269876.877 4796348.912 0.721118464 0.688153879 0.506512076 0.979010914 0.649529357 0.796931546 0.886519287 0.83511287 0.681742913 1 22.19350518 -14 0.041675129 2.103551778 0.125194738 0.304721208 0.122475588 954.6793634 2.960711541 129.6694248 37.0305453 1.00E-14 14 -1.97835704 TSNSLT(ph)EDSK ddPTM_HeLa_A486_30min_R1 1 TSNSLTEDSK 10 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSNS(0.223)LT(0.777)EDSK 97.463 0.010144 141500000 191790 205670 120330 88822 202220 225320 295230 271080 152980 316870 TRUE FALSE FALSE 178346.5114 189371.9602 166924.9985 206782.1048 176855.682 197522.3093 221360.3314 209361.0016 166240.4296 237523.6895 0.750857785 0.797276097 0.702772001 0.870574658 0.744581235 0.831589934 0.931950543 0.881432088 0.699889893 1 17.85771188 -6.500713724 7.636768052 0.870384373 0.777065419 0.26884988 0.081362747 0.299179346 81.44023848 0.02864497 0.024274109 3.16E-07 6.500713724 -0.093318954 TSPDTLRR ddPTM_HeLa_A486_30min_R1 1 TSPDTLRR 8 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 0 0 74.2 0.0036653 0 168140 161310 111080 76885 166060 167430 207700 187880 130970 228680 FALSE FALSE TRUE 156354.2543 148527.2081 154093.1508 178992.1656 145231.2064 146774.1889 155731.2632 145103.8254 142322.5851 171417.0395 0.912127842 0.866467001 0.898937184 1.044191208 0.84723903 0.856240367 0.908493482 0.846495925 0.830270931 1 17.387151 TSPGGRT(ph)SPEAR ddPTM_HeLa_A485_30min_R1 1 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 TSPGGRT(0.5)S(0.5)PEAR 111.07 0.00047306 649390000 156610 291180 271200 200000 390930 333480 407100 510040 242680 323410 TRUE FALSE FALSE 191447.3542 325230.9681 371528.1656 210925.4936 352007.6366 350940.4971 320119.7593 384951.8903 291383.65 242789.8389 0.788531164 1.339557576 1.530245941 0.8687575 1.449845011 1.445449689 1.318505588 1.585535424 1.200147631 1 17.88934852 TSPGGRT(ph)SPEAR ddPTM_HeLa_A486_30min_R1 1 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 TSPGGRT(0.5)S(0.5)PEAR 90.725 0.0008082 0 66085 57052 45477 25584 82843 63229 70728 82079 43456 75338 TRUE FALSE FALSE 61452.78276 52530.99174 63086.91232 59560.84494 72452.05846 55428.44885 53031.10632 63391.40347 47222.80107 56472.87443 1.088182307 0.930198653 1.117118846 1.054680597 1.282953262 0.981505712 0.93905449 1.122510659 0.836203249 1 15.78527044 TSPGGRTS(ph)PEAR ddPTM_HeLa_A485_30min_R1 2 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 TSPGGRT(0.029)S(0.971)PEAR;TSPGGRT(0.049)S(0.951)PEAR ; 131.86 1.22E-05 460130000 178346 304379 274266 194067 421460 293750 390385 507670 243960 321191 TRUE FALSE FALSE 218018.4524 339973.4763 375728.4066 204668.3888 379497.9626 309130.2958 306976.0556 383163.1365 292920.5343 241123.9948 0.904175682 1.409952902 1.558237316 0.848809713 1.573870584 1.282038712 1.273104553 1.589070954 1.214812879 1 17.8794157 -4.253954338 24.02044897 1.324213272 0.904175331 0.207404772 0.232825892 777.9211974 2496340.35 0.054569708 0.544115336 5.57E-05 4.253954338 -0.420037941 TSPGGRTS(ph)PEAR ddPTM_HeLa_A486_30min_R1 2 TSPGGRTSPEAR 12 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 TSPGGRT(0.055)S(0.945)PEAR;TSPGGRT(0.178)S(0.822)PEAR ; 144.18 1.01E-07 943690000 413820 344510 320010 191958 557570 363940 497640 563880 305630 477220 TRUE FALSE FALSE 384813.355 317209.7729 443926.4422 446887.925 487634.3715 319040.7831 373125.2085 435496.8334 332122.2545 357721.0058 1.075735975 0.886751876 1.240985111 1.249263861 1.363169519 0.891870418 1.043062058 1.217420354 0.92843934 1 18.44847531 -6.282024147 24.97869555 1.031428708 1.156928924 0.205619131 0.142658212 1736.557301 2107228.21 0.05424612 0.047890823 5.22E-07 6.282024147 0.125500215 TSPGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TSPGSPR 7 0 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 TSPGS(1)PR 80.455 0.012341 510460000 845910 496290 191800 1416800 259870 1254000 450700 569660 586940 1134900 TRUE FALSE FALSE 1034079.761 554326.7984 262754.8015 1494196.196 233996.4303 1319657.501 354404.2631 429949.9918 704733.4743 851990.3163 1.213722435 0.650625703 0.30840116 1.753771337 0.274646819 1.548911385 0.415972173 0.504641876 0.827161367 1 19.70047751 TSPGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 TSPGSPR 7 0 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 TS(0.002)PGS(0.998)PR 75.043 0.012352 0 285200 124010 318160 110500 141660 640960 203940 204310 682340 531400 TRUE FALSE FALSE 265208.9528 114182.996 441360.0726 257249.5844 123891.6819 561884.872 152912.0549 157793.0731 741485.7806 398333.9812 0.665795451 0.286651407 1.108015117 0.645813806 0.311024637 1.410587343 0.383879012 0.396132594 1.861467551 1 18.60361903 -7.753758967 24.99999181 1.430733854 0.658988959 0.386660005 0.392721559 153.4704868 499563.1939 0.265909254 0.096281249 1.76E-08 7.753758967 -0.771744895 TSPLKDNPS(ph)PEPQLDDIKR ddPTM_HeLa_A486_30min_R1 2 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 T(0.05)S(0.057)PLKDNPS(0.893)PEPQLDDIKR;TSPLKDNPS(1)PEPQLDDIKR ; 165.38 8.94E-13 1193970000 866670 666650 256870 526160 597380 928560 1293010 1208730 532100 1427720 TRUE FALSE FALSE 805920.9085 613822.2261 356336.9432 1224927.071 522451.0301 814003.7081 969485.2219 933528.5654 578222.8564 1070209.619 0.753049584 0.57355327 0.332959952 1.144567428 0.488176354 0.760602123 0.905883487 0.872285717 0.540289347 1 20.02946197 -13.99999995 0.042407245 2.26577656 2.29E-07 0.139959713 0.222086585 1442.772533 4.549902084 226.6200989 63.3251277 1.00E-14 13.99999995 -2.26577633 TSPPGGELS(ph)PGAGR ddPTM_HeLa_A485_30min_R1 1 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 TSPPGGELS(1)PGAGR 62.044 0.024826 277260000 121290 448930 653000 131850 601910 272980 237600 429720 458700 187300 TRUE FALSE FALSE 148270.5421 501428.4583 894571.8736 139052.6316 541981.727 287272.8107 186834.819 324330.4962 550756.8826 140609.557 1.054484099 3.5661051 6.362098656 0.988927315 3.854515572 2.043053238 1.328749076 2.306603499 3.916923531 1 17.10133513 TSPPGGELS(ph)PGAGR ddPTM_HeLa_A486_30min_R1 1 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 TSPPGGELS(1)PGAGR 100.56 0.00065883 145830000 176770 260660 422720 77975 398820 169360 201750 223460 245220 134070 TRUE FALSE FALSE 164379.3358 240004.3523 586408.5048 181529.7406 348796.2768 148466.0851 151270.0161 172583.0361 266475.867 100497.9994 1.635647843 2.388150549 5.835026653 1.806302034 3.47067881 1.477303887 1.505204254 1.717278326 2.651553949 1 16.61680726 -6.265630526 24.73827963 1.704781443 3.079827619 0.254647266 1.15821652 467.3149934 2758320.452 0.404891782 0.369786287 5.42E-07 6.265630526 1.375046175 TSPRPAS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 TSPRPASPAR 10 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 0 T(0.024)S(0.024)PRPAS(0.952)PAR;T(0.066)S(0.066)PRPAS(0.868)PAR;T(0.003)S(0.009)PRPAS(0.988)PAR;T(0.004)S(0.006)PRPAS(0.99)PAR ;;; 66.533 0.0084164 375841000 198309 298714 277281 219425 333435 260356 323313 345528 235543 313109 TRUE FALSE FALSE 242422.1529 333646.0038 379858.7805 231411.6321 300237.0406 273987.8376 254234.5363 260786.7162 282814.3196 235056.6886 1.031334842 1.419427823 1.61603051 0.984492862 1.277296308 1.16562451 1.081588181 1.109463074 1.20317495 1 17.84264921 -5.279156874 24.99960771 1.129120495 1.361980779 0.32417767 0.156899936 949.9205238 1340347.738 0.044075559 0.065528548 5.26E-06 5.279156874 0.232860284 TSPRPAS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 TSPRPASPAR 10 1 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 0 T(0.058)S(0.271)PRPAS(0.672)PAR;T(0.132)S(0.132)PRPAS(0.736)PAR;T(0.027)S(0.027)PRPAS(0.945)PAR;T(0.002)S(0.002)PRPAS(0.995)PAR ;;; 64.104 0.010702 306741000 228108 210343 190283 78512 238234 199854 225286 230605 186756 246247 TRUE FALSE FALSE 212118.8072 193674.6546 263965.6736 182779.9038 208352.4703 175198.0454 168917.06 178101.2756 202944.1604 184585.1484 1.149165082 1.04924289 1.430048278 0.99021999 1.128760749 0.949144863 0.915117286 0.964873269 1.099460938 1 17.49392695 TSPSGGTWSSVVSGVPRLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TSPSGGTWSSVVSGVPRLSPK 21 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 TSPSGGTWSSVVSGVPRLS(1)PK;TSPSGGTWSSVVSGVPRLS(1)PK ; 199.83 9.77E-27 1252010000 419590 394000 290590 630010 578260 460360 871320 964210 361230 881210 TRUE FALSE FALSE 512926.3479 440074.8727 398091.3335 664425.851 520686.404 484463.7377 685155.364 727735.9857 433725.5476 661540.5645 0.775351317 0.665227344 0.601764056 1.004361466 0.787081597 0.732326578 1.035696676 1.100062528 0.655629558 1 19.3354701 -5.604819341 0.793301494 0.931540484 0.676933369 0.240809864 0.150470724 1.060538554 1.384335066 0.08045645 0.169423901 2.48E-06 5.604819341 -0.254607114 TSPSGGTWSSVVSGVPRLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TSPSGGTWSSVVSGVPRLSPK 21 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;A0A5F9ZHH4 Q99700;A0A5F9ZHH4 ATXN2 Ataxin-2 1 0 TSPSGGTWSSVVSGVPRLS(1)PK;TSPSGGTWSSVVSGVPRLS(1)PK ; 223.69 5.70E-36 1529580000 700890 557750 276900 424850 652940 679330 1105460 1006500 466070 1175160 TRUE FALSE FALSE 651761.2304 513551.8587 384123.0956 989072.2707 571042.1768 595521.1715 828862.2156 777341.9217 506469.3229 880892.287 0.739887544 0.582990527 0.436061368 1.122807278 0.648254259 0.676043122 0.940934809 0.882448323 0.574950343 1 19.7486061 -5.067460875 0.058207936 1.393932806 1.37E-12 0.158630297 0.189633933 247.5996953 3.041996541 25.95406024 48.49066605 8.56E-06 5.067460875 -1.393932806 TSPSS(ph)PAPLPHQEATPR ddPTM_HeLa_A485_30min_R1 1 TSPSSPAPLPHQEATPR 17 0 P04920-2;P04920-3;P04920 P04920-2 SLC4A2 Anion exchange protein 2 1 0 T(0.037)S(0.037)PS(0.252)S(0.675)PAPLPHQEATPR 87.352 0.00076613 394370000 137120 167050 124990 140800 159170 145590 181020 176750 139470 265650 TRUE FALSE FALSE 167621.8709 186585.0444 171229.0023 148491.5475 143322.4759 153212.8673 142343.5982 133401.7854 167460.3497 199428.3439 0.840511773 0.935599427 0.858599128 0.744585973 0.71866653 0.76826024 0.713758112 0.66892089 0.839701852 1 17.60551094 -5.157793708 4.318713848 0.759748829 0.889525873 0.18442745 0.090112914 0.283289342 8.945074476 0.023292544 0.042031257 6.95E-06 5.157793708 0.129777044 TSPT(ph)TPEASATNS(ph)PCTSKPATPAPSEK ddPTM_HeLa_A485_30min_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 TSPT(0.585)T(0.415)PEAS(0.087)AT(0.062)NS(0.85)PCTSKPATPAPSEK 160.86 1.11E-13 625450000 287750 146980 128590 441560 207480 187090 341900 196110 180170 569950 TRUE FALSE FALSE 351758.9948 164168.0324 176160.7921 465681.3047 186822.5627 196885.7431 268850.2719 148013.715 216328.4664 427871.9542 0.822112764 0.383684957 0.411713809 1.088366041 0.436631943 0.460151083 0.628342824 0.34592993 0.505591601 1 18.70681959 -10.79836074 4.412779167 1.05685301 0.558893984 0.261899492 0.219020806 0.102958676 0.004704631 0.178230213 0.051077136 1.59E-11 10.79836074 -0.497959027 TSPTT(ph)PEASATNS(ph)PCTSKPATPAPSEK ddPTM_HeLa_A485_30min_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 TSPT(0.03)T(0.97)PEAS(0.061)AT(0.257)NS(0.679)PCT(0.003)SKPATPAPSEK 138.84 1.25E-06 209420000 150090 81336 66385 253010 132700 103340 171840 118380 101110 326520 TRUE FALSE FALSE 183477.0027 90847.53767 90943.57401 266831.2956 119487.9221 108750.7226 135124.9802 89347.11939 121401.8496 245124.5732 0.748505139 0.370617831 0.371009617 1.088553841 0.487457951 0.443654919 0.551250242 0.364496787 0.495265929 1 17.90315559 -10.66044607 4.384242004 1.014854519 0.542337587 0.292689025 0.211274886 0.031324543 0.002426044 0.208889001 0.050178952 2.19E-11 10.66044607 -0.472516932 TSPTT(ph)PEASATNS(ph)PCTSKPATPAPSEK ddPTM_HeLa_A486_30min_R1 2 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 TSPT(0.024)T(0.975)PEAS(0.019)AT(0.015)NS(0.963)PCT(0.002)SKPATPAPSEK;T(0.038)S(0.044)PT(0.421)T(0.497)PEAS(0.017)AT(0.079)NS(0.902)PCT(0.001)SKPATPAPSEK ; 194.93 4.52E-21 1246700000 1803530 1684210 586830 785670 1135710 2039510 2281210 1974620 1379040 2625490 TRUE FALSE FALSE 1677111.86 1550747.066 814066.2919 1829079.466 993258.6617 1787895.992 1710427.13 1525042.132 1498576.298 1968050.215 0.852169242 0.787961127 0.413641017 0.929386584 0.504691727 0.908460556 0.869097301 0.77490001 0.761452267 1 20.9083356 -6.314075169 24.99735913 0.849108002 0.69969572 0.216465328 0.156055072 584.6652626 277662.6765 0.053237465 0.046951065 4.85E-07 6.314075169 -0.149412282 TSPTTPEASATNS(ph)PCTSKPATPAPSEK ddPTM_HeLa_A485_30min_R1 2 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 TSPTTPEAS(0.041)AT(0.004)NS(0.954)PCTSKPATPAPSEK;TSPTTPEASATNS(0.999)PCTSKPATPAPSEK ; 253.88 3.51E-63 785530000 482920 255690 207729 694250 421380 338550 535310 346950 310910 917170 TRUE FALSE FALSE 590343.8879 285590.7213 284576.6014 732175.1196 379425.9276 356275.9545 420936.6454 261859.9685 373306.7852 688536.3983 0.857389514 0.41477941 0.413306547 1.063378961 0.55106154 0.517439536 0.611349881 0.380313908 0.542174366 1 19.3931734 -9.952672732 4.443136079 1.000008885 0.588388552 0.264140022 0.202769906 93612479 161364963.2 12238.54578 0.050823716 1.12E-10 9.952672732 -0.411620332 TSPTTPEASATNS(ph)PCTSKPATPAPSEK ddPTM_HeLa_A486_30min_R1 2 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 TSPTTPEASAT(0.001)NS(0.986)PCT(0.012)S(0.001)KPATPAPSEK;TSPT(0.001)T(0.004)PEAS(0.056)AT(0.17)NS(0.719)PCT(0.038)S(0.008)KPAT(0.003)PAPSEK ; 327.88 1.35E-126 770970000 139396 128404 51306 51188 91819 149988 155169 163098 110811 212989 TRUE FALSE FALSE 129625.0602 118228.7994 71173.05722 119168.2509 80302.20484 131484.0055 116344.075 125964.1458 120416.1867 159655.1681 0.811906447 0.740525977 0.445792379 0.746410231 0.502972787 0.823549949 0.728721008 0.788976313 0.754226676 1 17.28459973 -8.267617167 0.514725122 1.00808669 0.657982405 0.404889572 0.115698861 1.367148189 0.781507238 0.152236818 0.061103072 5.40E-09 8.267617167 -0.350104285 TSPTTPEASATNS(ph)PCTSKPATPAPSEKGEGIR ddPTM_HeLa_A485_30min_R1 2 TSPTTPEASATNSPCTSKPATPAPSEKGEGIR 32 2 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 TSPTTPEASAT(0.001)NS(0.995)PCT(0.003)S(0.001)KPATPAPSEKGEGIR;TSPTTPEASAT(0.001)NS(0.998)PCTSKPATPAPSEKGEGIR ; 352.59 3.14E-148 758960000 238318 205738 145370 289370 433570 293160 497790 464780 258690 473630 TRUE FALSE FALSE 291331.0169 229797.2694 199148.4124 305177.5504 390402.2484 308509.4043 391433.0999 350791.9763 310606.7102 355562.7575 0.819351889 0.646291729 0.560093565 0.858294475 1.097984084 0.867665125 1.100883295 0.986582449 0.873563678 1 18.4397447 -5.491062097 5.467700018 0.98678165 0.67533672 0.6904718 0.093652075 0.103128633 8.653351591 0.026571164 0.038286793 3.23E-06 5.491062097 -0.31144493 TSPTTPEASATNS(ph)PCTSKPATPAPSEKGEGIR ddPTM_HeLa_A486_30min_R1 1 TSPTTPEASATNSPCTSKPATPAPSEKGEGIR 32 2 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 TSPTTPEASATNS(0.999)PCTSKPATPAPSEKGEGIR 320.16 6.30E-110 538650000 230120 165830 83224 120440 236080 208000 318510 314380 160370 283020 TRUE FALSE FALSE 213989.7763 152689.0269 115450.5616 280390.4067 206468.645 182339.0748 238815.4291 242802.5369 174271.0007 212149.9498 1.008672293 0.719722192 0.544193207 1.321661433 0.973220334 0.859482055 1.12569166 1.144485479 0.821452001 1 17.69472481 -5.251670332 24.99970335 1.035035772 0.753748548 0.355063806 0.171433726 765.7068289 1959495.583 0.046657501 0.079547665 5.60E-06 5.251670332 -0.281287224 TSPVTASDPAGPSYAAATLQASSAASSAS(ph)PVSR ddPTM_HeLa_A485_30min_R1 1 TSPVTASDPAGPSYAAATLQASSAASSASPVSR 33 0 F5H8D7;P18887;M0QYS5;M0R1U8 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 TSPVTASDPAGPSYAAATLQASSAAS(0.007)S(0.145)AS(0.702)PVS(0.145)R 117.88 2.65E-05 188170000 34349 41062 38784 45016 59290 54896 92203 122350 40320 78880 TRUE FALSE FALSE 41989.81655 45863.84371 53131.81554 47475.11009 53386.87942 57770.26967 72503.07582 92343.47066 48411.85416 59216.66768 0.709087799 0.774509028 0.897244266 0.801718704 0.901551565 0.975574478 1.224369399 1.559416872 0.81753763 1 15.85371569 -6.460000564 2.222343333 1.193687157 0.811880693 0.41001372 0.185100542 0.279562904 2.739808789 0.076457777 0.061738527 3.47E-07 6.460000564 -0.381806464 TSPVVAPT(ph)SEPSS(ph)PLHTQLLKDPEPAFQR ddPTM_HeLa_A486_30min_R1 1 TSPVVAPTSEPSSPLHTQLLKDPEPAFQR 29 1 B7ZM87;O75044 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 2 0 TSPVVAPT(0.56)S(0.44)EPS(0.194)S(0.804)PLHT(0.002)QLLKDPEPAFQR 114.23 0.0036172 121880000 74194 72088 39032 20218 72643 64404 78225 81145 58125 80138 TRUE FALSE FALSE 68993.38374 66375.48434 54146.23571 47068.52576 63531.43757 56458.48929 58652.27762 62670.05488 63163.3218 60070.92319 1.148532103 1.10495196 0.901371793 0.783549233 1.057607145 0.939863853 0.976383823 1.043267717 1.051479126 1 15.87437922 -9.738619974 14.08329953 1.000000122 0.99494164 0 0.100980783 0 0 0.10437949 0.025315745 1.83E-10 9.738619974 -0.005058482 TSPVVAPTS(ph)EPS(ph)SPLHTQLLKDPEPAFQR ddPTM_HeLa_A485_30min_R1 1 TSPVVAPTSEPSSPLHTQLLKDPEPAFQR 29 1 B7ZM87;O75044 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 2 0 TSPVVAPT(0.036)S(0.963)EPS(0.561)S(0.426)PLHT(0.014)QLLKDPEPAFQR 75.654 0.010854 98837000 57506 41578 37591 59449 66803 46202 71896 56004 43652 90444 TRUE FALSE FALSE 70298.01131 46440.18542 51497.47519 62696.54834 60151.85876 48621.06528 56534.83226 42268.93119 52412.556 67897.9753 1.035347682 0.683970107 0.758453768 0.923393489 0.885915353 0.716090061 0.83264386 0.622535959 0.771931059 1 16.05108093 -6.256159373 24.90123456 0.767798915 0.845947697 0.053461098 0.126203791 1166.296111 5500419.188 0.041299223 0.040149806 5.54E-07 6.256159373 0.078148781 TSPVVAPTSEPSS(ph)PLHTQLLKDPEPAFQR ddPTM_HeLa_A486_30min_R1 1 TSPVVAPTSEPSSPLHTQLLKDPEPAFQR 29 1 B7ZM87;O75044 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 TSPVVAPT(0.002)S(0.001)EPS(0.161)S(0.829)PLHT(0.006)QLLKDPEPAFQR 82.765 0.0015977 99664000 85988 78378 43951 18696 86829 86371 96003 98364 68326 91013 TRUE FALSE FALSE 79960.68524 72167.04183 60970.00425 43525.23284 75938.09717 75715.42418 71982.03398 75968.66447 74248.55269 68222.7524 1.172053053 1.057814868 0.893690185 0.637987054 1.113090494 1.109826583 1.055103048 1.113538545 1.088325376 1 16.05796534 TSQCS(ph)SPSLSASPGS(ph)PTRPQIR ddPTM_HeLa_A485_30min_R1 1 TSQCSSPSLSASPGSPTRPQIR 22 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMD3;H0YND9 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 2 0 T(0.126)S(0.141)QCS(0.367)S(0.322)PS(0.046)LS(0.034)AS(0.347)PGS(0.559)PT(0.059)RPQIR 66.474 0.010536 590660000 123270 165500 141290 160680 217810 160850 197820 227840 136250 219600 TRUE FALSE FALSE 150690.9862 184853.7853 193559.0506 169457.5415 196124.0716 169271.8573 155554.141 171961.8828 163594.1252 164857.7614 0.914066677 1.121292584 1.174097288 1.027901508 1.189656283 1.026775178 0.943565772 1.043092429 0.992334991 1 17.33086228 -6.50967671 24.71135106 0.99645806 1.091038297 0.241271154 0.076057042 754.170402 1411648.952 0.02704409 0.02277786 3.09E-07 6.50967671 0.094580236 TSQCSSPSLSASPGS(ph)PTRPQIR ddPTM_HeLa_A485_30min_R1 4 TSQCSSPSLSASPGSPTRPQIR 22 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMD3;H0YND9 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 TSQCSSPSLSASPGS(0.997)PT(0.003)RPQIR;TSQCSSPSLSASPGS(0.989)PT(0.011)RPQIR;TSQCSSPSLSASPGS(0.996)PT(0.004)RPQIR;TSQCSSPSLSASPGS(0.999)PT(0.001)RPQIR ;;; 267.38 4.63E-60 3003770000 644450 774990 675940 775220 1038930 725820 1004510 1071850 673090 1067620 TRUE FALSE FALSE 787805.6792 865618.339 925998.3342 817568.3056 935490.4813 763822.8129 789888.2324 808977.1069 808172.9891 801481.9821 0.982936232 1.080022207 1.155357644 1.020070724 1.167200888 0.953013081 0.98553461 1.009351582 1.008348294 1 19.61231056 -6.281461483 24.99228557 0.991476805 1.081789656 0.414784396 0.053369704 825.4340936 1030332.928 0.018424711 0.016269077 5.23E-07 6.281461483 0.090312851 TSQCSSPSLSASPGS(ph)PTRPQIR ddPTM_HeLa_A486_30min_R1 3 TSQCSSPSLSASPGSPTRPQIR 22 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMD3;H0YND9 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 TSQCSSPSLSASPGS(0.97)PT(0.03)RPQIR;TSQCSSPSLSASPGS(0.996)PT(0.004)RPQIR;TSQCSSPSLSASPGS(0.999)PTRPQIR ;; 224.88 2.28E-36 2340300000 511980 484255 333330 191843 484063 464927 610120 598615 395981 592351 TRUE FALSE FALSE 476092.8459 445880.8702 462404.3029 446620.1992 423347.3048 407569.0338 457461.5228 462323.4322 430304.9519 444022.454 1.07222696 1.00418541 1.041398467 1.005850482 0.953436703 0.917901854 1.030266642 1.041216335 0.969106287 1 18.76027311 -4.057784296 0.875758657 0.989022364 1.131259985 0.302043175 0.036733803 4.472272395 2.119707047 0.014218389 0.663000831 8.75E-05 4.057784296 0.142237621 TSQEELLAEVVQGQS(ph)RTPR ddPTM_HeLa_A485_30min_R1 1 TSQEELLAEVVQGQSRTPR 19 1 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;A0A087WTC9 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 TSQEELLAEVVQGQS(0.555)RT(0.445)PR 52.784 0.017036 65412000 20872 33470 31439 29178 53820 39222 53306 57377 29121 37085 TRUE FALSE FALSE 25514.90439 37384.02535 43069.59439 30771.92026 48461.49183 41275.60327 41916.73763 43305.20079 34965.31759 27840.392 0.91647073 1.342798095 1.547018246 1.105297665 1.740689996 1.482579817 1.505608744 1.555481 1.255920448 1 14.7648919 -4.281127335 3.551601759 1.428482611 0.86657751 0.304756307 0.213310549 0.287245819 6.525665267 0.050820732 0.418859225 5.23E-05 4.281127335 -0.561905101 TSQEELLAEVVQGQSRT(ph)PR ddPTM_HeLa_A486_30min_R1 2 TSQEELLAEVVQGQSRTPR 19 1 Q6PJT7;Q6PJT7-5;Q6PJT7-4;H0YJA2;Q6PJT7-2;G3V256;Q6PJT7-9;Q6PJT7-10;Q6PJT7-11;Q6PJT7-3;G3V5I6;A0A087WTC9 Q6PJT7 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 TSQEELLAEVVQGQS(0.028)RT(0.972)PR;TSQEELLAEVVQGQS(0.221)RT(0.779)PR ; 103.25 0.00014426 107537000 89431 82839 84659 46748 144898 85517 125795 137256 77128 108195 TRUE FALSE FALSE 83162.34872 76274.53595 117441.232 108831.7065 126723.5417 74966.78201 94319.76048 106005.8051 83813.51714 81102.26777 1.025401028 0.940473529 1.448063479 1.34190707 1.562515392 0.924348777 1.162973158 1.30706339 1.033430007 1 16.30745463 -7.860368695 6.52599985 1.004374606 1.216969909 0.135629821 0.199628983 0.466846587 25.22306754 0.201909425 0.052441327 1.38E-08 7.860368695 0.212595303 TSQEGS(ph)S(ph)DDAER ddPTM_HeLa_A485_30min_R1 2 TSQEGSSDDAER 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 TSQEGS(1)S(1)DDAER;TSQEGS(1)S(1)DDAER ; 213.29 1.46E-17 1385320000 2650700 3037800 2184400 3966100 3064300 2751700 3901100 3718600 2806700 5024800 TRUE FALSE FALSE 3240339.07 3393044.285 2992500.46 4182758 2759207.533 2895774.757 3067598.116 2806607.519 3369978.945 3772209.835 0.859002869 0.899484502 0.793301696 1.108834923 0.731456534 0.767660041 0.813209829 0.74402211 0.893369959 1 21.8469785 TSQEGS(ph)S(ph)DDAER ddPTM_HeLa_A486_30min_R1 2 TSQEGSSDDAER 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 TSQEGS(1)S(1)DDAER;TSQEGS(1)S(1)DDAER ; 211.09 2.95E-17 1255300000 2808400 2012760 1862460 1038080 2030400 3301400 2885000 2618500 2721700 3611100 TRUE FALSE FALSE 2611545.663 1853261.567 2583654.39 2416702.702 1775728.299 2894106.834 2163142.486 2022324.711 2957619.147 2706857.056 0.964788908 0.68465439 0.954484975 0.892807655 0.656011109 1.069176087 0.799134362 0.74711175 1.092639577 1 21.36818727 -7.770625581 24.99897562 1.046319881 0.845359207 0.291148116 0.125010553 263.0182892 715741.5706 0.108598095 0.029627283 1.70E-08 7.770625581 -0.200960674 TSQEGS(ph)SDDAER ddPTM_HeLa_A485_30min_R1 1 TSQEGSSDDAER 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 TSQEGS(0.919)S(0.081)DDAER 145.61 1.90E-07 749350000 469390 679150 544250 611780 636880 567770 745410 821190 593310 861100 TRUE FALSE FALSE 573804.1861 758570.6847 745590.7231 645199.9923 573469.991 597497.5593 586147.0641 619791.8649 712381.8748 646443.6174 0.887632225 1.1734522 1.153373168 0.998076205 0.88711525 0.924284103 0.906725735 0.958771729 1.10200156 1 19.30216502 -5.51030918 22.56024693 0.955075813 1.080689588 0.216368429 0.090929899 216.6766215 388897.5551 0.026318404 0.036891897 3.09E-06 5.51030918 0.125613775 TSQEGS(ph)SDDAER ddPTM_HeLa_A486_30min_R1 1 TSQEGSSDDAER 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 TSQEGS(0.855)S(0.145)DDAER 196.8 6.77E-15 691950000 869570 512170 649390 283270 664090 931650 846300 712820 896330 1017500 TRUE FALSE FALSE 808617.6335 471583.7839 900851.1993 659466.8757 580793.6398 816712.4953 634546.7888 550526.4468 974024.6061 762711.3772 1.060188241 0.618299134 1.181116771 0.8646349 0.761485481 1.070801511 0.831961877 0.721801802 1.277055299 1 19.54077769 -7.765392341 24.99993827 1.138527612 0.888638962 0.245069038 0.175331218 142.8901207 903626.6737 0.140326892 0.041497614 1.72E-08 7.765392341 -0.24988865 TSQEGSS(ph)DDAER ddPTM_HeLa_A486_30min_R1 1 TSQEGSSDDAER 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 TSQEGS(0.064)S(0.936)DDAER 245.93 4.81E-28 665480000 477970 346520 423780 173820 381840 600670 483410 412620 516870 581730 TRUE FALSE FALSE 444466.7712 319060.4932 587878.9652 404661.7444 333946.0667 526565.4426 362455.705 318675.4334 561672.7078 436061.0216 1.019276544 0.731687717 1.348157565 0.927993387 0.765824163 1.207549899 0.831204091 0.730804676 1.288059881 1 18.73417051 -3.883544028 20.12051237 0.972245376 11.38488537 0.001193325 0.218588543 7691.146133 1341393.44 0.050680535 34921.3418 0.000130754 3.883544028 10.41263999 TSQGGAGVS(ph)PLLVK ddPTM_HeLa_A486_30min_R1 2 TSQGGAGVSPLLVK 14 0 A0A5F9ZGW8;A0A494C0H4;H0Y9M2;Q17R98-2;Q17R98;H0Y9K9;G5E9Z1;A0A590UJE4;Q17R98-3 A0A5F9ZGW8 ZNF827 Zinc finger protein 827 1 0 TSQGGAGVS(1)PLLVK;TSQGGAGVS(1)PLLVK ; 148.44 6.79E-08 117817000 275280 251050 136248 102275 223980 266050 298870 279280 220080 367360 TRUE FALSE FALSE 255984.2935 231155.8837 189006.8744 238101.3687 195886.3399 233227.456 224089.5649 215694.0406 239156.7116 275370.6649 0.929598996 0.839435398 0.686372583 0.864657711 0.711355147 0.846958248 0.813774281 0.783286196 0.868490156 1 18.07101535 -8.086065631 3.683014109 0.999920258 0.806625395 0.424063236 0.067383384 0.342944756 10.86302191 0.063326487 0.016699564 8.20E-09 8.086065631 -0.193294863 TSQLGDS(ph)PFYPGK ddPTM_HeLa_A485_30min_R1 2 TSQLGDSPFYPGK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 TSQLGDS(1)PFYPGK;TSQLGDS(1)PFYPGK ; 195.6 3.73E-18 1009680000 1043250 935590 728020 1401600 1608490 1088770 1759290 1681320 906090 1986960 TRUE FALSE FALSE 1275317.363 1044999.112 997344.8934 1478165.859 1448343.088 1145776.314 1383403.319 1268973.634 1087933.952 1491647.439 0.854972381 0.700567094 0.66861972 0.990961953 0.970968776 0.7681281 0.927433174 0.850719547 0.729350598 1 20.50847515 -5.252340061 24.98828333 0.88458067 0.737304469 0.335170944 0.096257454 792.8287127 2177238.592 0.026529416 0.045109479 5.59E-06 5.252340061 -0.1472762 TSQLGDS(ph)PFYPGK ddPTM_HeLa_A486_30min_R1 2 TSQLGDSPFYPGK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 TSQLGDS(1)PFYPGK;TSQLGDS(1)PFYPGK ; 230.97 5.26E-28 1005920000 1097800 1004590 558620 465100 1027050 1173690 1435100 1363060 809390 1365910 TRUE FALSE FALSE 1020849.889 924982.6297 774932.6244 1082776.305 898227.8121 1028892.061 1076022.801 1052720.993 879548.5769 1023877.245 0.997043243 0.903411648 0.756860872 1.057525509 0.877280764 1.004897868 1.050929499 1.0281711 0.859037136 1 19.96561133 -5.284917084 24.99559801 0.983116863 0.887535839 0.222112523 0.082970762 1175.362442 1251349.767 0.023466525 0.03482948 5.19E-06 5.284917084 -0.095581024 TSQVGAASAPAKES(ph)PR ddPTM_HeLa_A485_30min_R1 8 TSQVGAASAPAKESPR 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR ;;;;;;; 349.39 3.36E-103 1.10E+11 17798820 15901000 11629970 24429980 22393430 16429260 30613690 26638090 14092880 32551030 TRUE FALSE FALSE 21758106.1 17760483.63 15932379.87 25764527.95 20163861.48 17289470.65 24072825.04 20105056.66 16921191.75 24436657.28 0.890387988 0.726796772 0.651986877 1.054339293 0.825148106 0.707521919 0.985111211 0.822741688 0.692451163 1 24.54254361 -11.5101264 2.124377951 3.195829321 0.818914739 0.163932203 0.123676983 5680681.503 351224.1635 60286448.74 0.03098624 3.09E-12 11.5101264 -2.376914583 TSQVGAASAPAKES(ph)PR ddPTM_HeLa_A486_30min_R1 8 TSQVGAASAPAKESPR 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR ;;;;;;; 345 4.41E-103 21620500000 12614600 10761490 5408051 5853642 10352540 12379330 16704270 15318390 8861070 17592420 TRUE FALSE FALSE 11730381.68 9908710.34 7502193.18 13627574.4 9054027.9 10852094.13 12524684.97 11830727 9629154.682 13187163.52 0.889530312 0.751390572 0.568901202 1.033396938 0.686578875 0.822928608 0.949763377 0.897139629 0.730191498 1 23.65263095 -6.531209108 23.16944674 0.885794003 0.782629496 0.130830085 0.131022679 175.9692455 489414.5292 0.048953677 0.038007214 2.94E-07 6.531209108 -0.103164507 TSQVGAASAPAKES(ph)PRK ddPTM_HeLa_A485_30min_R1 2 TSQVGAASAPAKESPRK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK ; 127.74 7.17E-06 2683980000 702350 600540 539250 1215330 916720 679180 1374830 1018090 636410 1704370 TRUE FALSE FALSE 858585.3344 670767.929 738741.0151 1281720.401 825448.138 714740.8146 1081086.339 768401.8312 764131.6495 1279501.926 0.671030904 0.524241438 0.577366083 1.001733858 0.645132392 0.558608628 0.844927481 0.600547616 0.597210238 1 20.28715089 -11.20907792 2.298753947 1.995040907 0.671028041 0.337336166 0.139158722 26494353.22 5274158.232 137015521.7 0.0356978 6.18E-12 11.20907792 -1.324012866 TSQVGAASAPAKES(ph)PRK ddPTM_HeLa_A486_30min_R1 3 TSQVGAASAPAKESPRK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK ;; 154.69 1.18E-08 1736500000 1144060 937310 466900 724160 947600 1308020 1817880 1631810 768150 1939780 TRUE FALSE FALSE 1063867.302 863034.142 647696.184 1685881.077 828743.172 1146649.791 1363027.196 1260282.485 834733.8605 1454046.462 0.731659771 0.593539591 0.445443939 1.159440995 0.569956458 0.788592264 0.93740278 0.866741551 0.57407647 1 20.47164194 -2.317472484 0.088281596 1.106728553 4.97E-14 0.1396715 0.19861705 248.3573764 2.089316967 4.540747795 33.86677551 0.004814238 2.317472484 -1.106728553 TSRDT(ph)S(ph)PSSGSAVSSSK ddPTM_HeLa_A486_30min_R1 1 TSRDTSPSSGSAVSSSK 17 1 B7Z8L1;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8WF16;F8W6A0;Q8NEY8-9;Q8NEY8-7 B7Z8L1 PPHLN1 Periphilin-1 2 0 T(0.317)S(0.342)RDT(0.423)S(0.48)PS(0.242)S(0.193)GS(0.002)AVSSSK 88.101 0.016836 226230000 344210 374250 226120 259720 474830 598440 744020 714480 385880 673860 TRUE FALSE FALSE 320082.6565 344593.067 313679.7197 604641.2855 415272.3938 524610.5573 557858.3266 551808.501 419328.3891 505121.0699 0.633675124 0.682198957 0.62099908 1.197022499 0.822124474 1.038583794 1.104405181 1.0924282 0.830154223 1 18.9462697 -5.245529161 24.98929264 1.012987364 0.649281799 0.699152406 0.110156477 441.2109298 692984.4856 0.029074642 0.050155344 5.68E-06 5.245529161 -0.363705566 TSRPENAIIYNNNEDFQVGQAK ddPTM_HeLa_A485_30min_R1 2 TSRPENAIIYNNNEDFQVGQAK 22 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 279.96 1.49E-64 244781000 104278 100792 78417 136356 142539 107788 151942 160216 95801 180328 FALSE FALSE TRUE 127474.2813 112578.7476 107426.7115 143804.783 128347.3167 113431.613 119478.3504 120922.7748 115027.382 135375.5483 0.94163446 0.831603263 0.793545901 1.062265563 0.948083449 0.837903258 0.882569651 0.893239409 0.849690978 1 17.04660766 TSS(ph)DDES(ph)EEDEDDLLQR ddPTM_HeLa_A485_30min_R1 2 TSSDDESEEDEDDLLQR 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 TS(0.006)S(0.994)DDES(1)EEDEDDLLQR;T(0.008)S(0.015)S(0.977)DDES(1)EEDEDDLLQR ; 519.35 8.90E-295 333460000 348910 355170 315550 547140 489300 334440 519390 451210 343270 699840 TRUE FALSE FALSE 426523.8258 396704.0419 432285.0761 577028.8728 440583.574 351950.7613 408418.0835 340550.04 412161.1403 525382.7676 0.811834442 0.755076235 0.822800257 1.098301864 0.838595403 0.669893995 0.777372439 0.648194157 0.784496877 1 19.00300936 -6.015452608 24.70137509 0.754107119 0.873675735 0.108700965 0.1229524 1103.905925 1764621.424 0.040304674 0.041586708 9.65E-07 6.015452608 0.119568616 TSS(ph)DDES(ph)EEDEDDLLQR ddPTM_HeLa_A486_30min_R1 2 TSSDDESEEDEDDLLQR 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 T(0.013)S(0.026)S(0.961)DDES(1)EEDEDDLLQR;T(0.047)S(0.079)S(0.873)DDES(1)EEDEDDLLQR ; 328 4.20E-91 435880000 422330 467070 302230 243480 439330 484390 597070 545150 450970 659910 TRUE FALSE FALSE 392726.8479 430057.6722 419261.55 566833.7448 384225.1348 424630.8867 447676.7708 421031.2455 490060.4427 494664.2407 0.793926093 0.869393089 0.847567937 1.145895939 0.776739257 0.858422445 0.905011388 0.851145506 0.990693085 1 18.91609009 -14 0.099020942 1.338375499 0.819658895 0.132387945 0.09893235 464.446377 3.130285228 32.56585809 1.764106019 1.00E-14 14 -0.518716604 TSS(ph)DPVLLK ddPTM_HeLa_A485_30min_R1 3 TSSDPVLLK 9 0 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 TS(0.002)S(0.998)DPVLLK;TSS(1)DPVLLK;TSS(1)DPVLLK ;; 229.53 1.59E-12 589001000 1765670 1496470 1174820 2415040 2162270 1755270 2748120 2273800 1512630 3343570 TRUE FALSE FALSE 2158437.2 1671469.149 1609434.806 2546967.52 1946986.807 1847173.223 2160961.712 1716146.985 1816200.966 2510079.533 0.859907892 0.665902864 0.641188769 1.014695944 0.775667377 0.735902269 0.860913642 0.683702234 0.723563115 1 21.25930165 -11.41473745 2.187119116 2.837679706 0.772420747 0.287597701 0.106935657 6159736.532 516240.1359 56181191.2 0.027299979 3.85E-12 11.41473745 -2.065258958 TSS(ph)DPVLLK ddPTM_HeLa_A486_30min_R1 3 TSSDPVLLK 9 0 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 TS(0.004)S(0.995)DPVLLK;TSS(1)DPVLLK;TS(0.001)S(0.999)DPVLLK ;; 172.27 4.75E-06 630300000 2419370 2505400 1277960 1120700 2301630 2699900 3505600 3190300 2001780 3446800 TRUE FALSE FALSE 2249784.657 2306862.979 1772820.337 2609046.237 2012938.104 2366813.789 2628461.802 2463938.334 2175295.902 2583698.845 0.870761181 0.89285289 0.686155951 1.009810506 0.779091614 0.916056371 1.017325145 0.953647651 0.841930903 1 21.30100649 -6.511645829 23.70101411 0.951838597 0.849999175 0.242655146 0.088527188 409.73826 864537.7723 0.031308701 0.026010601 3.08E-07 6.511645829 -0.101839422 TSS(ph)EASMDAAYLDK ddPTM_HeLa_A486_30min_R1 1 TSSEASMDAAYLDK 14 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 T(0.001)S(0.039)S(0.96)EASMDAAYLDK 204.23 6.36E-22 110420000 197610 182180 81651 65909 143880 186790 228040 202210 139100 259290 TRUE FALSE FALSE 183758.5595 167743.3933 113268.4539 153439.4829 125833.2288 163745.7489 170981.98 156171.1972 151157.3 194362.0963 0.94544442 0.863045812 0.582770283 0.789451677 0.647416503 0.842477788 0.879708458 0.803506446 0.777709764 1 17.56838737 -6.482615601 24.93182915 0.850604836 0.760477391 0.154327569 0.109833082 1074.95917 665639.236 0.039650481 0.034963305 3.29E-07 6.482615601 -0.090127445 TSS(ph)EDNLYLAVLR ddPTM_HeLa_A485_30min_R1 13 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 0 T(0.001)S(0.006)S(0.993)EDNLYLAVLR;TS(0.003)S(0.997)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TS(0.001)S(0.999)EDNLYLAVLR;T(0.001)S(0.021)S(0.979)EDNLYLAVLR;TSS(1)EDNLYLAVLR;T(0.003)S(0.058)S(0.939)EDNLYLAVLR;T(0.001)S(0.03)S(0.969)EDNLYLAVLR;T(0.003)S(0.058)S(0.939)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TSS(1)EDNLYLAVLR;T(0.001)S(0.025)S(0.975)EDNLYLAVLR;TS(0.005)S(0.994)EDNLYLAVLR ;;;;;;;;;;;; 367.29 6.24E-109 48817702000 3907912 4135173 3751393 5113678 5533618 3845248 5656203 5046715 3450206 6793853 TRUE FALSE FALSE 4777213.542 4618745.511 5139189.379 5393025.281 4982671.562 4046579.239 4447709.022 3809000.233 4142630.697 5100270.479 0.936658862 0.905588347 1.007630752 1.057399858 0.976942612 0.793404831 0.872053559 0.746823183 0.812237452 1 22.28214233 -6.251472357 23.78503243 0.830777115 0.979071144 0.443700034 0.072995133 307.2779916 733279.9496 0.024176716 0.023870506 5.60E-07 6.251472357 0.148294029 TSS(ph)EDNLYLAVLR ddPTM_HeLa_A486_30min_R1 14 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 0 TS(0.001)S(0.999)EDNLYLAVLR;TSS(1)EDNLYLAVLR;T(0.001)S(0.031)S(0.968)EDNLYLAVLR;T(0.003)S(0.019)S(0.979)EDNLYLAVLR;TS(0.006)S(0.994)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TSS(1)EDNLYLAVLR;T(0.001)S(0.008)S(0.992)EDNLYLAVLR;TSS(1)EDNLYLAVLR;TS(0.014)S(0.986)EDNLYLAVLR;T(0.001)S(0.017)S(0.983)EDNLYLAVLR;TS(0.002)S(0.997)EDNLYLAVLR;TS(0.001)S(0.999)EDNLYLAVLR;T(0.003)S(0.016)S(0.981)EDNLYLAVLR ;;;;;;;;;;;;; 366.59 5.16E-140 59665769000 4921446 5693077 3767845 2577470 5585749 5386198 6670036 6126537 4372147 6179457 TRUE FALSE FALSE 4576478.05 5241936.845 5226855.49 6000480.418 4885132.275 4721703.654 5001122.444 4731658.266 4751128.222 4632080.746 0.987996173 1.131659212 1.128403363 1.295417923 1.054630207 1.019348304 1.079670826 1.021497363 1.025700648 1 22.14322897 -5.975237259 24.99934935 1.034099822 1.14003381 0.332786973 0.071520316 273.9469828 276563.2954 0.022661296 0.025694599 1.06E-06 5.975237259 0.105933989 TSS(ph)EEEDSRREEPSLLLVLK ddPTM_HeLa_A485_30min_R1 1 TSSEEEDSRREEPSLLLVLK 20 2 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 T(0.106)S(0.106)S(0.611)EEEDS(0.176)RREEPSLLLVLK 69.133 0.0036788 58667000 17182 17069 27763 44920 67881 37145 63481 71817 39164 77220 TRUE FALSE FALSE 21004.07662 19065.07107 38033.68901 47373.86586 61122.5293 39089.85476 49917.76576 54203.76815 47023.85557 57970.47513 0.362323693 0.328875536 0.65608724 0.817206789 1.05437344 0.674306268 0.861089471 0.9350237 0.811169056 1 15.82303069 -4.962249908 2.260851953 0.875813407 0.330887668 0.815725338 0.100871132 0.120656858 1.220702045 0.028367228 0.07427269 1.09E-05 4.962249908 -0.54492574 down TSS(ph)EEEDSRREEPSLLLVLK ddPTM_HeLa_A486_30min_R1 2 TSSEEEDSRREEPSLLLVLK 20 2 A0A087WZV0;O43314;O43314-2;D6RBU4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 T(0.115)S(0.115)S(0.654)EEEDS(0.115)RREEPSLLLVLK;T(0.301)S(0.301)S(0.398)EEEDSRREEPSLLLVLK ; 179.33 3.35E-19 129017000 108831 130637 105573 123192 238955 195704 288083 328401 122855 166058 TRUE FALSE FALSE 101202.5089 120284.8483 146453.6929 286797.2018 208983.0357 171560.0303 216001.5864 253631.2612 133504.1703 124475.9959 0.813028312 0.966329672 1.176561728 2.304036209 1.678902299 1.378257944 1.735287071 2.037591741 1.072529441 1 16.92550803 -5.015498873 18.93304853 1.651171898 0.935114565 0.366552332 0.378498327 26.76313118 32697.48892 0.098606616 0.179503768 9.65E-06 5.015498873 -0.716057333 TSS(ph)FTEQLDEGTPNR ddPTM_HeLa_A485_30min_R1 3 TSSFTEQLDEGTPNR 15 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71;C9J0Y3;C9JHJ5 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 TSS(0.894)FT(0.106)EQLDEGTPNR;T(0.001)S(0.071)S(0.927)FT(0.002)EQLDEGTPNR;T(0.001)S(0.057)S(0.93)FT(0.013)EQLDEGTPNR ;; 301.48 1.63E-67 1867710000 1572030 1427400 1460500 2304760 2089870 1304520 1886290 1452930 1557220 2938030 TRUE FALSE FALSE 1921722.65 1594322.013 2000799.726 2430663.203 1881795.205 1372822.65 1483268.732 1096596.639 1869739.77 2205633.191 0.871279348 0.72284096 0.907131673 1.102025129 0.853176862 0.622416572 0.672491119 0.497179968 0.847711114 1 21.07276145 -6.131610714 5.688976977 0.694066937 0.898465372 0.209592513 0.153319697 0.31024178 13.08068973 0.050950293 0.051107961 7.39E-07 6.131610714 0.204398435 TSS(ph)FTEQLDEGTPNR ddPTM_HeLa_A486_30min_R1 5 TSSFTEQLDEGTPNR 15 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71;C9J0Y3;C9JHJ5 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 TSS(0.5)FT(0.5)EQLDEGTPNR;TSS(0.73)FT(0.27)EQLDEGTPNR;TS(0.006)S(0.994)FTEQLDEGTPNR;TSS(0.883)FT(0.116)EQLDEGTPNR;T(0.132)S(0.132)S(0.531)FT(0.205)EQLDEGTPNR ;;;; 363.28 5.87E-141 1936286000 1685977 1868880 1351650 669831 1782520 1927070 2134500 2073820 1709265 2146420 TRUE FALSE FALSE 1567798.719 1720783.142 1875045.078 1559400.419 1558939.72 1689327.696 1600425.524 1601656.457 1857425.466 1608942.461 0.974428083 1.069511921 1.165389766 0.96920832 0.968921983 1.049961535 0.9947065 0.995471557 1.154438714 1 20.6176813 -4.241681672 22.62596367 1.038952827 0.97442786 0.079633328 0.067463055 3488.585488 3994796.919 0.017144992 0.532088943 5.73E-05 4.241681672 -0.064524967 TSS(ph)GTSLSAMHSSGSSGK ddPTM_HeLa_A485_30min_R1 4 TSSGTSLSAMHSSGSSGK 18 0 Q12888;Q12888-2;Q12888-3;A6NNK5;M0R142 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.048)S(0.158)S(0.791)GT(0.001)S(0.001)LSAMHSSGSSGK;T(0.021)S(0.128)S(0.807)GT(0.021)S(0.021)LS(0.003)AMHSSGSSGK;T(0.003)S(0.103)S(0.894)GTSLSAMHSSGSSGK;T(0.084)S(0.084)S(0.815)GT(0.008)S(0.008)LS(0.001)AMHSSGSSGK ;;; 231.39 3.07E-35 2596510000 1437700 3276990 3430460 567017 4999100 2366170 3091780 3290060 2996710 1285170 TRUE FALSE FALSE 1757511.405 3660205.474 4699529.907 597991.7029 4501372.051 2490059.002 2431195.945 2483167.626 3598122.21 964800.7708 1.821631427 3.793742278 4.870984818 0.619808484 4.665597486 2.580904864 2.519894282 2.573762067 3.729394004 1 19.87987153 -10.76185144 2.571741295 0.503697502 3.033878049 0.19571268 1.227882342 25865616.25 18154096.74 80970715.19 0.289534895 1.73E-11 10.76185144 2.530180546 TSS(ph)GTSLSAMHSSGSSGK ddPTM_HeLa_A486_30min_R1 3 TSSGTSLSAMHSSGSSGK 18 0 Q12888;Q12888-2;Q12888-3;A6NNK5;M0R142 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.108)S(0.108)S(0.724)GT(0.021)S(0.027)LS(0.012)AMHSSGSSGK;T(0.115)S(0.115)S(0.739)GT(0.014)S(0.014)LS(0.002)AMHSSGSSGK;T(0.093)S(0.093)S(0.793)GT(0.01)S(0.01)LS(0.002)AMHSSGSSGK ;; 161.47 4.10E-12 2136890000 2228210 2649530 2128630 70227 3304080 1529200 1682890 1852870 2684190 516492 TRUE FALSE FALSE 2072023.985 2439571.593 2952892.543 163492.0051 2889651.477 1340542.852 1261813.122 1431011.949 2916857.75 387159.0414 5.351867744 6.301213022 7.627078867 0.422286419 7.463732389 3.462512065 3.259159641 3.696186311 7.534003958 1 18.56256681 TSS(ph)IADEGTYTLDSILR ddPTM_HeLa_A485_30min_R1 3 TSSIADEGTYTLDSILR 17 0 E7ERV5;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 E7ERV5 MYO5A Unconventional myosin-Va 1 0 T(0.029)S(0.029)S(0.942)IADEGTYTLDSILR;T(0.122)S(0.122)S(0.756)IADEGTYTLDSILR;T(0.013)S(0.013)S(0.974)IADEGTYTLDSILR ;; 185.67 1.03E-17 351654000 102296 94201.9 92041 145043.3 123612.5 94927.8 140551.9 126364.1 111414.5 251269.9 TRUE FALSE FALSE 125051.3923 105217.9928 126090.796 152966.6482 111305.2055 99898.07282 110521.8384 95373.10634 133774.3682 188632.9382 0.662935082 0.557792259 0.668445274 0.810922258 0.590062407 0.529589762 0.585909542 0.505601552 0.709178203 1 17.52522209 -8.021787632 22.54950365 1.000000004 0.615352336 0.666428077 0.082189201 299.042631 309500.2675 0.08518719 0.021995238 9.51E-09 8.021787632 -0.384647668 TSS(ph)IADEGTYTLDSILR ddPTM_HeLa_A486_30min_R1 4 TSSIADEGTYTLDSILR 17 0 E7ERV5;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 E7ERV5 MYO5A Unconventional myosin-Va 1 0 T(0.133)S(0.133)S(0.734)IADEGTYTLDSILR;TS(0.001)S(0.999)IADEGTYTLDSILR;T(0.024)S(0.024)S(0.953)IADEGTYTLDSILR;T(0.146)S(0.146)S(0.707)IADEGTYTLDSILR ;;; 264.03 9.34E-52 620672000 409441 464959 347650 199300 452527 494725 554809 498764 456876 567915 TRUE FALSE FALSE 380741.3003 428113.9555 482269.3904 463980.4721 395766.844 433690.8595 415989.92 385206.3251 496478.3795 425705.3875 0.894377453 1.005657828 1.13287124 1.089909796 0.929673092 1.018758212 0.977177955 0.904865986 1.166248758 1 18.69949582 -5.75187849 24.98459993 0.994548703 1.036212691 0.026639168 0.087136332 742.0378306 1939088.059 0.026207164 0.033395748 1.77E-06 5.75187849 0.041663988 TSS(ph)KES(ph)SPIPS(ph)PTSDR ddPTM_HeLa_A485_30min_R1 1 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.302)S(0.343)S(0.389)KES(0.664)S(0.301)PIPS(0.992)PT(0.007)S(0.002)DR 70.917 0.016169 239760000 158060 131600 93589 349060 224000 146550 285150 267710 127130 470740 TRUE FALSE FALSE 193219.9017 146989.4752 128211.4657 368128.2639 201697.7735 154223.1314 224225.373 202053.7027 152643.8249 353393.1813 0.546756168 0.415937497 0.362801187 1.041696001 0.570746082 0.436406641 0.634492641 0.571753258 0.431937663 1 18.43091468 -10.80346859 2.59699641 1.135491846 0.560923961 0.348924456 0.181489484 51343894.84 35407515.94 43787995.04 0.04624479 1.57E-11 10.80346859 -0.574567885 TSS(ph)KES(ph)SPIPS(ph)PTSDR ddPTM_HeLa_A486_30min_R1 2 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.06)S(0.072)S(0.866)KES(0.501)S(0.501)PIPS(0.94)PT(0.054)S(0.006)DR;T(0.018)S(0.023)S(0.952)KES(0.631)S(0.376)PIPS(0.49)PT(0.288)S(0.222)DR ; 131.45 0.0001363 1773000000 1336540 1296930 467870 1603960 1179490 1680420 2647300 2200900 936750 3353000 TRUE FALSE FALSE 1242855.448 1194156.543 649041.794 3734099.94 1031547.366 1473106.866 1984917.54 1699803.115 1017948.244 2513386.976 0.494494266 0.475118458 0.258233929 1.485684447 0.410421227 0.586104281 0.789738134 0.676299803 0.405010551 1 21.26120138 -11.48662595 2.160818908 5.165484224 0.630144589 0.11021594 0.322676899 16826061.27 693389.8849 345885796.1 0.084366504 3.26E-12 11.48662595 -4.535339635 TSS(ph)KES(ph)SPIPS(ph)PTSDRK ddPTM_HeLa_A486_30min_R1 2 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.269)S(0.312)S(0.419)KES(0.5)S(0.5)PIPS(0.991)PT(0.005)S(0.004)DRK;T(0.118)S(0.14)S(0.741)KES(0.5)S(0.5)PIPS(0.993)PT(0.004)S(0.003)DRK ; 110.9 0.00015265 1820390000 1493000 1226120 331670 1970050 888180 1870850 3190420 2538370 836640 4226910 TRUE FALSE FALSE 1388348.41 1128957.786 460101.5064 4586375.961 776776.1825 1640043.548 2392143.171 1960438.563 909160.6288 3168464.223 0.438177083 0.356310725 0.145212783 1.447507574 0.245158578 0.517614665 0.754985066 0.618734638 0.286940475 1 21.59535229 -11.29498416 2.178527905 3.000034128 0.54463085 0.136473155 0.350439187 19401821.85 2444262.32 191352129.4 0.093939859 5.07E-12 11.29498416 -2.455403278 TSS(ph)KESS(ph)PIPS(ph)PTSDR ddPTM_HeLa_A486_30min_R1 1 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.25)S(0.284)S(0.489)KES(0.46)S(0.517)PIPS(0.966)PT(0.027)S(0.007)DR 94.564 0.0015535 510610000 396920 379390 137580 405870 336290 465710 714040 603810 279020 888390 TRUE FALSE FALSE 369097.9577 349325.7547 190854.6605 944885.8715 294109.3724 408255.4352 535379.6397 466335.6441 303205.6783 665931.3616 0.55425826 0.524567207 0.286598096 1.418893787 0.441651181 0.613059331 0.803956189 0.700275841 0.455310706 1 19.34501396 -11.61689468 2.059329531 7.476882184 0.652491581 0.116698177 0.292810287 7853032.83 305635.6368 238814320.1 0.072098696 2.42E-12 11.61689468 -6.824390602 TSS(ph)KESS(ph)PIPS(ph)PTSDRK ddPTM_HeLa_A485_30min_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.129)S(0.148)S(0.721)KES(0.396)S(0.607)PIPS(0.865)PT(0.04)S(0.095)DRK 71.905 0.0070735 1401100000 665970 373820 196400 1705100 678520 467860 1262400 1060400 348340 2328200 TRUE FALSE FALSE 814112.7289 417534.9972 269056.5329 1798245.295 610964.1664 492356.4262 992677.9271 800335.2374 418248.6428 1747822.587 0.465786822 0.238888661 0.153938126 1.028848871 0.349557313 0.281697027 0.567951195 0.457904162 0.239296966 1 20.73712732 -11.11915458 2.381321484 2.106371136 0.424423316 0.35186399 0.235922712 26192266.3 6479088.204 156927508.3 0.062905508 7.60E-12 11.11915458 -1.68194782 TSS(ph)KESS(ph)PIPS(ph)PTSDRK ddPTM_HeLa_A486_30min_R1 2 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.109)S(0.124)S(0.734)KES(0.449)S(0.584)PIPS(0.943)PT(0.027)S(0.03)DRK;T(0.131)S(0.163)S(0.705)KES(0.018)S(0.983)PIPS(0.98)PT(0.015)S(0.005)DRK ; 95.742 0.00064178 2948100000 1830520 1626630 405450 2847200 1359750 2821700 4438300 3749200 1261010 6073300 TRUE FALSE FALSE 1702210.001 1497729.915 562451.0983 6628425.49 1189197.476 2473587.343 3327790.396 2895589.004 1370315.362 4552506.149 0.37390614 0.328990201 0.123547576 1.455994846 0.261218203 0.543346294 0.730979879 0.636042854 0.301002419 1 22.11822954 -13.99999999 0.063157749 2.27619402 8.27E-12 0.124607972 0.358007258 881.3555752 4.040014226 180.9727084 27.45404074 1.00E-14 13.99999999 -2.27619402 TSS(ph)KESS(ph)PIPSPTSDR ddPTM_HeLa_A485_30min_R1 1 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 T(0.111)S(0.13)S(0.759)KES(0.363)S(0.632)PIPS(0.003)PT(0.001)S(0.001)DR 83.395 0.0027308 445470000 359390 259220 144090 780180 420420 327530 689560 603690 278950 1200800 TRUE FALSE FALSE 439335.0656 289533.5241 197394.8871 822799.2579 378561.5086 344678.9643 542229.8728 455634.081 334932.7063 901462.6591 0.48735803 0.321181938 0.218971784 0.912738037 0.419941419 0.382355232 0.601500092 0.505438663 0.371543627 1 19.78190821 -11.186802 2.329804352 2.440364995 0.471329811 0.442268976 0.178871279 23765573.07 4676452.189 180737212.3 0.046650259 6.50E-12 11.186802 -1.969035184 TSS(ph)KESS(ph)PIPSPTSDR ddPTM_HeLa_A486_30min_R1 2 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 T(0.127)S(0.148)S(0.724)KES(0.369)S(0.632)PIPSPTSDR;T(0.055)S(0.071)S(0.874)KES(0.044)S(0.953)PIPS(0.003)PT(0.001)SDR ; 96.341 0.00078567 805180000 891320 727620 298460 850490 675740 1046130 1516280 1293710 588090 1865460 TRUE FALSE FALSE 828843.0708 669960.7413 414031.705 1979983.701 590982.3882 917069.1169 1136890.706 999160.4745 639066.1147 1398336.674 0.592734987 0.479112616 0.296088712 1.415956356 0.422632403 0.655828553 0.813030744 0.714534985 0.457018776 1 20.41528033 -11.62069428 2.124669717 8.14803341 0.656999976 0.112845392 0.294044824 9587997.226 460303.8338 331441669.5 0.076038034 2.40E-12 11.62069428 -7.491033434 TSS(ph)KESS(ph)PIPSPTSDRK ddPTM_HeLa_A485_30min_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 T(0.276)S(0.33)S(0.394)KES(0.067)S(0.931)PIPS(0.002)PTSDRK 78.354 0.0027985 1290200000 374930 221450 126610 869370 411070 291640 629080 561330 220880 1056000 TRUE FALSE FALSE 458331.885 247346.6511 173448.3077 916861.4817 370142.4274 306909.8194 494671.9189 423662.9374 265208.59 792758.6342 0.578148083 0.312007515 0.218790815 1.156545564 0.466904315 0.387141566 0.623988056 0.534416049 0.334538885 1 19.59652216 -10.51400155 3.067540455 1.015569263 0.515801071 0.260143242 0.246584398 98916616.56 115254288.2 12940446.87 0.065849852 3.06E-11 10.51400155 -0.499768191 TSS(ph)KESS(ph)PIPSPTSDRK ddPTM_HeLa_A486_30min_R1 2 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 T(0.267)S(0.327)S(0.403)KES(0.019)S(0.984)PIPSPTSDRK;T(0.251)S(0.325)S(0.424)KES(0.003)S(0.997)PIPSPTSDRK ; 142.23 5.75E-08 2466800000 1309670 1023890 337570 1622300 850170 1605240 2593610 2135640 718070 3213800 TRUE FALSE FALSE 1217868.896 942753.2275 468286.1444 3776796.387 743533.7511 1407201.81 1944661.346 1649401.393 780312.8858 2409043.562 0.505540421 0.39133922 0.194386748 1.567757614 0.308642717 0.584132986 0.807233782 0.684670638 0.323909828 1 21.20002905 TSS(ph)LDTITGPYLTGQWPR ddPTM_HeLa_A485_30min_R1 4 TSSLDTITGPYLTGQWPR 18 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 T(0.003)S(0.012)S(0.986)LDTITGPYLTGQWPR;T(0.027)S(0.027)S(0.947)LDTITGPYLTGQWPR;T(0.014)S(0.014)S(0.973)LDTITGPYLTGQWPR;TSS(1)LDTITGPYLTGQWPR ;;; 264.52 4.62E-58 2173500000 1006396 987771 950689 1332770 1548600 971438 1494480 1292250 976840 1873300 TRUE FALSE FALSE 1230265.318 1103282.226 1302388.423 1405575.85 1394415.947 1022300.992 1175172.139 975323.6613 1172882.828 1406320.786 0.874811303 0.78451676 0.926096262 0.999470295 0.991534763 0.726933003 0.835635903 0.693528583 0.83400803 1 20.42349428 -6.263035489 24.99494318 0.799967567 0.913298413 0.194903084 0.095332864 215.6925886 3377701.805 0.033129752 0.030751881 5.46E-07 6.263035489 0.113330846 TSS(ph)LDTITGPYLTGQWPR ddPTM_HeLa_A486_30min_R1 4 TSSLDTITGPYLTGQWPR 18 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 TS(0.004)S(0.996)LDTITGPYLTGQWPR;TS(0.017)S(0.983)LDTITGPYLTGQWPR;T(0.002)S(0.002)S(0.997)LDTITGPYLTGQWPR;T(0.003)S(0.003)S(0.994)LDTITGPYLTGQWPR ;;; 359.96 8.01E-116 1970420000 1556590 1612380 1080660 677660 1619970 1617780 1814930 1955560 1353670 1888810 TRUE FALSE FALSE 1447481.079 1484609.137 1499120.493 1577626.727 1416778.257 1418194.752 1360815.318 1510321.678 1471007.206 1415839.682 1.02234815 1.048571498 1.058820792 1.114269325 1.000662911 1.001663373 0.961136586 1.066732129 1.038964527 1 20.43322649 -5.81190144 24.99995969 1.011850483 1.059959256 0.344203137 0.033441914 134.050059 66410.36248 0.011003779 0.012477129 1.54E-06 5.81190144 0.048108773 TSS(ph)LDTLAAPYLAGHWPR ddPTM_HeLa_A486_30min_R1 1 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.127)S(0.127)S(0.746)LDTLAAPYLAGHWPR 137.69 2.12E-06 982000000 157950 172110 125730 70644 162760 162600 204410 190150 161850 210210 TRUE FALSE FALSE 146878.5207 158471.3768 174416.0232 164462.8022 142345.1231 142540.0652 153264.456 146856.9959 175879.2883 157572.0478 0.932135634 1.005707415 1.106896976 1.043730817 0.903365319 0.90460248 0.972662716 0.931999032 1.1161833 1 17.26565211 -1.163974514 20.34806293 0.989467106 0.036435965 0 0.073927935 0 0 0.017776722 0 0.068552845 1.163974514 -0.953031141 TSS(ph)LTQFPPSQSEER ddPTM_HeLa_A485_30min_R1 11 TSSLTQFPPSQSEER 15 0 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 T(0.126)S(0.126)S(0.746)LT(0.001)QFPPSQSEER;TS(0.017)S(0.983)LTQFPPSQSEER;T(0.027)S(0.016)S(0.957)LTQFPPSQSEER;T(0.007)S(0.043)S(0.95)LTQFPPSQSEER;T(0.002)S(0.048)S(0.947)LT(0.003)QFPPSQSEER;T(0.008)S(0.15)S(0.837)LT(0.005)QFPPSQSEER;T(0.014)S(0.014)S(0.973)LTQFPPSQSEER;T(0.023)S(0.023)S(0.954)LTQFPPSQSEER;T(0.001)S(0.046)S(0.953)LTQFPPSQSEER;TS(0.003)S(0.996)LT(0.001)QFPPSQSEER;TS(0.01)S(0.99)LTQFPPSQSEER ;;;;;;;;;; 248.67 3.28E-42 1179010000 1268490 1411120 1251957 1503860 1851139 1302954 1682446 1692457 1195199 1847940 TRUE FALSE FALSE 1550661.224 1576138.209 1715107.993 1586012.064 1666833.101 1371174.657 1322977.668 1277379.267 1435064.476 1387282.567 1.117768839 1.136133508 1.236307609 1.143250915 1.201509441 0.988388876 0.953646863 0.920778 1.03444281 1 20.40383024 -6.295980107 7.182227494 0.972212552 1.167815901 0.831184993 0.042201924 0.088414601 15.1415632 0.014835414 0.0132314 5.06E-07 6.295980107 0.195603349 TSS(ph)LTQFPPSQSEER ddPTM_HeLa_A486_30min_R1 7 TSSLTQFPPSQSEER 15 0 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 T(0.036)S(0.036)S(0.928)LTQFPPSQSEER;T(0.007)S(0.047)S(0.945)LT(0.001)QFPPSQSEER;T(0.051)S(0.232)S(0.714)LT(0.003)QFPPSQSEER;T(0.025)S(0.144)S(0.829)LT(0.002)QFPPSQSEER;T(0.05)S(0.05)S(0.9)LTQFPPSQSEER;TS(0.004)S(0.996)LTQFPPSQSEER;TSS(0.998)LT(0.002)QFPPSQSEER ;;;;;; 297.45 6.87E-84 746151000 859823 924110 675080 362135 1053663 939585 1094520 1101012 821395 1102824 TRUE FALSE FALSE 799553.8478 850880.158 936489.0553 843068.5813 921502.7615 823668.5557 820659.5193 850335.6025 892594.18 826669.6922 0.967198695 1.029286747 1.132845517 1.019837293 1.114717003 0.996369606 0.992729656 1.028628013 1.079747072 1 19.65695147 TSS(ph)PGGKKPPPTPQR ddPTM_HeLa_A485_30min_R1 3 TSSPGGKKPPPTPQR 15 2 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 T(0.193)S(0.193)S(0.614)PGGKKPPPTPQR;T(0.009)S(0.15)S(0.841)PGGKKPPPTPQR;T(0.04)S(0.04)S(0.92)PGGKKPPPTPQR ;; 98.391 0.00031036 1760020000 1232310 1362120 1000370 1446280 1705390 1654920 2839530 3179540 1176330 2191190 TRUE FALSE FALSE 1506433.108 1521408.085 1370448.492 1525286.614 1535595.384 1741569.052 2232841.219 2399752.83 1412408.641 1644966.659 0.915783369 0.924886883 0.833116273 0.927244699 0.933511555 1.058726049 1.357377796 1.458845878 0.858624479 1 20.64962691 -6.442287803 3.355534304 1.20749493 0.905155442 0.357596401 0.161259936 0.24248999 5.250046739 0.061019058 0.051354555 3.61E-07 6.442287803 -0.302339489 TSS(ph)PGGKKPPPTPQR ddPTM_HeLa_A486_30min_R1 1 TSSPGGKKPPPTPQR 15 2 Q70E73;C9K0J5 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 T(0.021)S(0.103)S(0.876)PGGKKPPPTPQR 133.93 5.65E-06 1069000000 851720 593570 325840 433300 708740 728350 1208700 1071900 483790 1345500 TRUE FALSE FALSE 792018.8263 546533.3515 452013.9743 1008744.298 619843.2205 638493.5823 906270.4757 827851.7694 525725.3067 1008578.042 0.785282639 0.541885039 0.448169557 1.000164841 0.614571401 0.63306314 0.898562568 0.82081082 0.521253968 1 19.94389129 -14 0.16317794 2.087544277 0.623833388 0.208076633 0.170384024 212.7580388 1.971433919 75.52675911 0.69382913 1.00E-14 14 -1.463710889 TSS(ph)PHSETQGWK ddPTM_HeLa_A485_30min_R1 2 TSSPHSETQGWK 12 0 H7C1N2;J3KR05;O75128-2;O75128-6;O75128-3;O75128;O75128-7 H7C1N2;O75128-3 COBL Protein cordon-bleu 1 0 TS(0.014)S(0.983)PHS(0.002)ETQGWK;T(0.016)S(0.079)S(0.903)PHS(0.001)ETQGWK ; 187.11 4.24E-15 0 315120 278210 211848 415180 445090 292480 422160 416720 286620 569090 TRUE FALSE FALSE 385217.3568 310744.2394 290219.3909 437860.2321 400775.2768 307793.8005 331962.0673 314518.7666 344142.005 427226.3363 0.901670436 0.727352724 0.679310628 1.024890544 0.938086543 0.720446692 0.777016862 0.736187683 0.805526195 1 18.70464106 -11.42199842 1.964828297 2.283423579 0.809845768 0.22433178 0.104632863 4016047.421 365191.3988 22867941.98 0.029633273 3.78E-12 11.42199842 -1.473577811 TSS(ph)PIPAQHAPRPYASSLEK ddPTM_HeLa_A485_30min_R1 1 TSSPIPAQHAPRPYASSLEK 20 1 H0YKX0;Q96EP0-3;Q96EP0 H0YKX0 RNF31 E3 ubiquitin-protein ligase RNF31 1 0 T(0.178)S(0.178)S(0.645)PIPAQHAPRPYASSLEK 98.015 0.00017512 260340000 242370 243560 173600 332850 315630 260910 393580 377640 224030 428640 TRUE FALSE FALSE 296284.3703 272042.2233 237821.8641 351032.7527 284204.769 274570.8442 309488.4177 285023.1979 268990.7661 321787.9365 0.920744182 0.845408396 0.739063952 1.090882264 0.883205169 0.853266431 0.961777564 0.885748549 0.835925576 1 18.29575072 -11.63195772 2.11189809 3.347302666 0.891394666 0.124584135 0.086924891 2666600.628 232728.8983 30346717.89 0.021646622 2.33E-12 11.63195772 -2.455908 TSS(ph)PRS(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_A485_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 2 0 T(0.225)S(0.29)S(0.485)PRS(0.999)PPSSSEIFTPAHEENVR;T(0.213)S(0.346)S(0.441)PRS(0.994)PPS(0.002)S(0.002)S(0.002)EIFTPAHEENVR ; 221.5 1.27E-37 452850000 128187 149628 151213 146772 246330 153683 231540 249080 158246 217497 TRUE FALSE FALSE 156701.7559 167125.693 207152.9812 154789.7827 221804.5203 161729.6042 182069.5875 187992.7395 190004.5207 163279.0006 0.959717755 1.023559015 1.268705592 0.948007901 1.358438742 0.990510743 1.115082691 1.151358954 1.163680081 1 17.31697973 -4.536506666 24.88338009 1.128100609 0.975677999 0.173149557 0.119511749 280.0378235 511323.9138 0.02795071 0.074031376 2.91E-05 4.536506666 -0.15242261 TSS(ph)PRS(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_A486_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 2 0 T(0.079)S(0.101)S(0.819)PRS(0.501)PPS(0.153)S(0.195)S(0.151)EIFTPAHEENVR;T(0.25)S(0.325)S(0.425)PRS(0.999)PPSSSEIFTPAHEENVR ; 230.85 3.17E-38 528240000 206089 271200 204320 80590 314250 260860 321530 336500 239700 284400 TRUE FALSE FALSE 191643.2253 249709.1243 283438.1759 187617.5928 274833.8347 228677.7454 241079.7932 259886.2957 260477.389 213184.3889 0.898955249 1.171329316 1.329544707 0.880071912 1.289183679 1.07267585 1.130851065 1.219068137 1.221840822 1 17.70174227 -4.258698871 24.20145536 1.152034123 0.898955108 0.250025131 0.128016845 220.7682172 1949432.018 0.02999279 0.200275953 5.51E-05 4.258698871 -0.253079015 TSS(ph)PRSPPSSSEIFTPAHEENVR ddPTM_HeLa_A485_30min_R1 1 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 T(0.067)S(0.067)S(0.457)PRS(0.403)PPS(0.002)S(0.002)S(0.002)EIFTPAHEENVR 101.49 0.00039203 314850000 34594 54709 52780 35282 68119 55173 87167 108080 42599 62211 TRUE FALSE FALSE 42289.31595 61106.74164 72305.51836 37209.36632 61336.83318 58061.77297 68543.05836 81573.21054 51148.22856 46702.94261 0.905495748 1.308413094 1.548200484 0.796724237 1.313339797 1.243214447 1.467638965 1.746639633 1.095182138 1 15.51122583 -6.405343617 2.545330402 1.38393009 1.17916987 0.04510876 0.276468714 0.725378132 9.183602549 0.109388997 0.092369956 3.93E-07 6.405343617 -0.20476022 TSS(ph)PRSPPSSSEIFTPAHEENVR ddPTM_HeLa_A486_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 T(0.124)S(0.124)S(0.476)PRS(0.214)PPS(0.019)S(0.019)S(0.019)EIFT(0.004)PAHEENVR;T(0.014)S(0.046)S(0.905)PRS(0.035)PPSSSEIFTPAHEENVR ; 190.15 2.09E-21 1181000000 130814 152432 172772 33377 262960 124963 182066 197706 108183 131539 TRUE FALSE FALSE 121644.6141 140352.7332 239673.9454 77703.34278 229977.1048 109546.3356 136511.1611 152692.6597 117560.3895 98600.77822 1.233708459 1.423444477 2.430751052 0.788060137 2.332406589 1.111008833 1.384483607 1.548594874 1.19228663 1 16.58931141 -7.863014337 0.605338024 0.996132339 1.601773288 0.121826458 0.480007102 1.693271019 1.490163938 0.467867275 0.212328169 1.37E-08 7.863014337 0.60564095 TSS(ph)RESLNR ddPTM_HeLa_A486_30min_R1 1 TSSRESLNR 9 1 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 T(0.303)S(0.303)S(0.393)RES(0.001)LNR 73.781 0.0023237 0 67097 62422 66277 60451 132180 92314 134780 149620 63891 89515 TRUE FALSE FALSE 62393.84679 57475.45338 91941.22936 140732.983 115600.7519 80925.23726 101056.6184 115554.7922 69429.12332 67099.86136 0.92986551 0.856565904 1.370214893 2.097366227 1.722816553 1.206041795 1.506062999 1.722131609 1.034713365 1 16.03402217 -4.835296296 4.765205316 1.515962343 0.891734913 0.326736526 0.320228265 0.20247729 8.428999553 0.085022448 0.191485049 1.46E-05 4.835296296 -0.62422743 TSS(ph)SETEEKKPEKPLILQSLGPK ddPTM_HeLa_A485_30min_R1 1 TSSSETEEKKPEKPLILQSLGPK 23 3 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 T(0.06)S(0.06)S(0.404)S(0.404)ET(0.07)EEKKPEKPLILQSLGPK 112.11 0.00097777 815130000 261610 89340 41207 521460 170140 163700 366170 281350 103060 635070 TRUE FALSE FALSE 319804.242 99787.53585 56451.18407 549946.0394 153200.2642 172271.0789 287934.7882 212348.4714 123743.1967 476758.7366 0.670788425 0.209304053 0.118406187 1.153510145 0.321337088 0.361338064 0.603942342 0.445400273 0.259550979 1 18.86289985 -10.10121869 4.572325913 1.000039708 0.460116789 0.24791 0.281956752 144617312.6 79872448.27 56942.67689 0.067525093 7.92E-11 10.10121869 -0.539922919 TSS(ph)SETEEKKPEKPLILQSLGPK ddPTM_HeLa_A486_30min_R1 1 TSSSETEEKKPEKPLILQSLGPK 23 3 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 T(0.011)S(0.394)S(0.568)S(0.027)ETEEKKPEKPLILQSLGPK 178.44 6.81E-20 897540000 247680 161800 50999 213060 122190 325540 530540 445400 154440 624810 TRUE FALSE FALSE 230318.911 148978.3787 70747.1786 496014.4475 106863.7908 285378.1846 397793.2805 343992.143 167826.9835 468353.5092 0.491762966 0.318089596 0.151055084 1.059059957 0.228169083 0.609322187 0.84934408 0.734471155 0.358333994 1 18.83723835 -8.600534275 0.098665587 1.509291967 5.65E-14 0.245988966 0.265726093 36.92176762 1.521025366 13.9141382 8.359700441 2.51E-09 8.600534275 -1.509291967 TSS(ph)TCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_A485_30min_R1 3 TSSTCSNESLSVGGTSVTPR 20 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 0 T(0.023)S(0.029)S(0.947)T(0.029)CS(0.972)NESLSVGGTSVTPR;TS(0.003)S(0.953)T(0.044)CS(1)NESLSVGGTSVTPR;T(0.003)S(0.005)S(0.992)T(0.001)CS(0.99)NES(0.009)LSVGGTSVTPR ;; 252.41 2.35E-48 1288250000 696280 700000 672230 990870 1030030 711160 1077850 889780 661420 1386600 TRUE FALSE FALSE 851165.0839 781858.9108 920915.8508 1044998.719 927476.5965 748395.2379 847558.5423 671560.0599 794160.9271 1040946.138 0.817684078 0.751104098 0.884691164 1.00389317 0.890993839 0.718956736 0.814219402 0.645143908 0.762922209 1 19.98946399 -6.251311398 24.75107712 0.767693129 0.871377087 0.11701861 0.10441198 1086.315314 2654773.174 0.035074883 0.034678571 5.61E-07 6.251311398 0.103683958 TSS(ph)TCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_A486_30min_R1 2 TSSTCSNESLSVGGTSVTPR 20 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 2 0 T(0.029)S(0.042)S(0.929)T(0.001)CS(1)NESLSVGGTSVTPR;T(0.002)S(0.003)S(0.989)T(0.006)CS(0.999)NES(0.001)LSVGGTSVTPR ; 197.85 7.43E-26 883490000 940400 943540 649950 422560 1029000 1039220 1287190 1173060 864880 1339790 TRUE FALSE FALSE 874482.8162 868770.4541 901628.0463 983741.035 899933.225 911011.6024 965121.4475 905979.8457 939848.4948 1004297.863 0.870740493 0.865052576 0.897769555 0.979531144 0.896081987 0.907112955 0.960991238 0.902102731 0.935826441 1 19.93775579 -1.000003957 0.019731574 1.532476213 0.137334663 0.517052809 0.03017206 2840.332776 4.329730499 113.9977745 204.2575921 0.099999089 1.000003957 -1.39514155 TSS(ph)TDEVLSLEEK ddPTM_HeLa_A485_30min_R1 2 TSSTDEVLSLEEK 13 0 K7ENH8;A0A0A0MRB7;P15923-2;K7EMM4 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 TSS(0.997)T(0.003)DEVLSLEEK;TS(0.025)S(0.975)TDEVLSLEEK ; 284.91 4.87E-49 901830000 1180370 899260 600690 1959880 1218640 879090 1699950 1399400 790010 2239800 TRUE FALSE FALSE 1442939.234 1004420.634 822910.2278 2066943.282 1097307.923 925117.7931 1336741.795 1056194.956 948557.7606 1681459.08 0.8581471 0.597350626 0.48940247 1.229255773 0.652592701 0.550187515 0.794989192 0.628141932 0.56412777 1 20.68128224 -10.09511715 4.792774728 1.000013493 0.706897219 0.156235242 0.204179339 275983983.8 10.20329871 41096.69926 0.049401277 8.03E-11 10.09511715 -0.293116274 TSS(ph)TDEVLSLEEK ddPTM_HeLa_A486_30min_R1 1 TSSTDEVLSLEEK 13 0 K7ENH8;A0A0A0MRB7;P15923-2;K7EMM4 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 TSS(0.998)T(0.002)DEVLSLEEK 392.71 4.50E-125 404850000 694590 617490 284730 368050 524490 753070 999180 870620 498670 1103800 TRUE FALSE FALSE 645902.8279 568557.8435 394985.0813 856839.0002 458703.5735 660163.8801 749174.5958 672398.8315 541895.1171 827401.2955 0.780640339 0.68716093 0.477380303 1.035578509 0.554390688 0.797876295 0.905454947 0.812663499 0.654936269 1 19.65822769 -14 0.130458163 1.824806296 0.644316296 0.197682591 0.15428853 234.3504239 1.923526139 50.80360801 1.142885163 1.00E-14 14 -1.18049 TSS(ph)TLDSEGTFNSYR ddPTM_HeLa_A485_30min_R1 3 TSSTLDSEGTFNSYR 15 0 Q92609;Q92609-2;C9JNM0;C9JED7;F2Z3C3;C9K0P2;C9J397;C9JWX0;C9JW04;C9JDR8 Q92609 TBC1D5 TBC1 domain family member 5 1 0 TS(0.019)S(0.971)T(0.01)LDSEGTFNSYR;TSS(0.999)TLDSEGTFNSYR;T(0.001)S(0.029)S(0.95)T(0.021)LDSEGTFNSYR ;; 183.06 8.43E-18 253967000 269850 262150 254640 380610 366080 262680 390290 361360 296610 572340 TRUE FALSE FALSE 329877.2015 292806.1621 348841.9325 401401.7605 329631.7898 276433.5186 306901.3531 272735.8934 356136.9063 429666.1711 0.767752324 0.681473622 0.811890616 0.934217743 0.767181156 0.643368124 0.714278605 0.634762315 0.828868853 1 18.71285667 -8.013404265 23.60225361 1.000000009 0.746275441 0.469602871 0.082930171 326.7814784 575398.9916 0.087753512 0.022657859 9.70E-09 8.013404265 -0.253724567 TSS(ph)TLDSEGTFNSYR ddPTM_HeLa_A486_30min_R1 2 TSSTLDSEGTFNSYR 15 0 Q92609;Q92609-2;C9JNM0;C9JED7;F2Z3C3;C9K0P2;C9J397;C9JWX0;C9JW04;C9JDR8 Q92609 TBC1D5 TBC1 domain family member 5 1 0 TSS(0.999)T(0.001)LDSEGTFNSYR;TS(0.012)S(0.975)T(0.012)LDSEGTFNSYR ; 302.13 1.46E-67 299790000 216910 233049 161203 106840 237108 235350 297700 292000 188490 327560 TRUE FALSE FALSE 201705.7291 214581.3485 223625.1188 248728.9194 207367.7037 206314.9099 223212.3113 225517.9743 204828.465 245536.8439 0.821488645 0.873927289 0.91075993 1.013000393 0.844548217 0.840260494 0.909078685 0.918468979 0.834206637 1 17.90558 -10.28935006 3.538109397 1.000340802 0.888448876 0.287350961 0.054059057 80010438.67 91266752.01 273232.173 0.013975342 5.14E-11 10.28935006 -0.111891926 TSS(ph)VLGMSVESAPAVEEEKGEELEQK ddPTM_HeLa_A486_30min_R1 1 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.017)S(0.017)S(0.966)VLGMSVESAPAVEEEKGEELEQK 270.28 1.24E-63 415680000 98341 92545 26276 104840 82941 161440 245510 187190 79662 316830 TRUE FALSE FALSE 91447.80373 85211.39716 36450.7709 244072.8183 72537.76639 141523.1742 184080.8013 144570.9233 86567.1663 237493.7058 0.385053589 0.358794339 0.153480998 1.027702261 0.305430269 0.595902842 0.7750976 0.60873581 0.364502992 1 17.85752975 -14 0.073421702 2.50159136 3.66E-11 0.295918104 0.237567155 380.5738951 1.996761407 97.04438463 10.92778487 1.00E-14 14 -2.50159136 TSS(ph)VPEYVYNLHLVENDFVGGR ddPTM_HeLa_A485_30min_R1 2 TSSVPEYVYNLHLVENDFVGGR 22 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 0 T(0.124)S(0.124)S(0.753)VPEYVYNLHLVENDFVGGR;T(0.047)S(0.047)S(0.906)VPEYVYNLHLVENDFVGGR ; 278.22 3.75E-73 90231000 33495 32473 27001.8 37266 44621 38206 49360 46715 27428.7 53050 TRUE FALSE FALSE 40945.84719 36270.43487 36990.88946 39301.74722 40178.37657 40206.40708 38813.83277 35258.073 32933.3885 39825.61131 1.028128529 0.910731403 0.928821636 0.98684605 1.008857749 1.00956158 0.974594777 0.885311533 0.826939937 1 15.28140889 -7.257607925 23.24106301 0.892094296 0.976440145 0.287718309 0.052393899 139.4333776 845798.1264 0.025757211 0.014106309 5.53E-08 7.257607925 0.084345848 TSSAFVGKT(ph)PEAS(ph)PEPK ddPTM_HeLa_A485_30min_R1 2 TSSAFVGKTPEASPEPK 17 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 2 0 TS(0.001)S(0.001)AFVGKT(0.999)PEAS(1)PEPK;TSSAFVGKT(1)PEAS(1)PEPK ; 170.11 3.49E-12 1342100000 978500 626700 390570 2153400 1013500 768240 1772200 1266100 558620 2852300 TRUE FALSE FALSE 1196163.949 699987.1134 535058.096 2271034.789 912592.3814 808463.8585 1393554.992 955586.9898 670729.91 2141274.103 0.558622527 0.326902153 0.249878376 1.060599755 0.426191294 0.377562059 0.650806448 0.446270278 0.313238697 1 21.03003806 -10.17190175 4.125543596 1.000182059 0.493188974 0.323030211 0.221443651 209209925.7 410481266.5 536177.9554 0.055567674 6.73E-11 10.17190175 -0.506993085 TSSAFVGKT(ph)PEAS(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 TSSAFVGKTPEASPEPK 17 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 2 0 T(0.009)S(0.011)S(0.012)AFVGKT(0.968)PEAS(1)PEPK;TSS(0.001)AFVGKT(0.998)PEAS(1)PEPK ; 136.14 5.42E-06 981980000 1250310 929210 279130 1053900 696630 1521860 2152190 1857910 710040 2884900 TRUE FALSE FALSE 1162669.726 855576.0155 387216.6114 2453532.461 609252.1696 1334108.386 1613689.298 1434904.451 771586.8389 2162502.262 0.537650178 0.395641674 0.179059517 1.134580298 0.281734813 0.616928088 0.746213924 0.663538936 0.356802789 1 21.04427021 -14 0.167280901 2.633426101 0.447514519 0.207502676 0.260150106 215.596218 2.019001854 118.0442147 0.970382182 1.00E-14 14 -2.185911582 TSSAVS(ph)TPSK ddPTM_HeLa_A486_30min_R1 1 TSSAVSTPSK 10 0 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 TSS(0.001)AVS(0.598)T(0.401)PSK 118.76 0.00032938 275420000 700330 611570 290890 282450 489300 697860 834150 709130 508460 783280 TRUE FALSE FALSE 651240.4835 563106.9659 403530.3983 657557.8742 427927.4315 611765.1285 625436.8473 547676.5792 552533.7222 587141.5897 1.109171101 0.959065029 0.687279534 1.11993067 0.728831749 1.041937991 1.065223207 0.932784509 0.941057033 1 19.16334893 TSSAVWNS(ph)PPLQGAR ddPTM_HeLa_A486_30min_R1 1 TSSAVWNSPPLQGAR 15 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 TSSAVWNS(1)PPLQGAR 94.09 0.00095725 181660000 204550 225450 219320 77377 271880 233710 307970 316990 240910 299010 TRUE FALSE FALSE 190212.1013 207584.5209 304246.5776 180137.5664 237778.2752 204877.2364 230912.6486 244818.2968 261792.2728 224135.9498 0.848646107 0.926154511 1.357419807 0.803697785 1.060866298 0.91407575 1.03023477 1.092275903 1.168006618 1 17.77401454 -7.15005191 3.873764127 1.097643685 0.993327288 0.082452732 0.148188609 0.635121786 16.75161354 0.075024528 0.04090255 7.08E-08 7.15005191 -0.104316397 TSSESIYSRPGSSIPGS(ph)PGHTIYAK ddPTM_HeLa_A485_30min_R1 3 TSSESIYSRPGSSIPGSPGHTIYAK 25 1 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;A0A0A0MRL6;A0A3B3IS55;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 TSSESIYSRPGS(0.009)S(0.009)IPGS(0.981)PGHTIYAK;TSSESIYSRPGSSIPGS(1)PGHTIYAK;TSSESIYSRPGSSIPGS(1)PGHTIYAK ;; 253.47 1.33E-61 2981080000 1795440 2104560 1760660 1642010 2891910 2124070 2927480 3289130 2005850 2693160 TRUE FALSE FALSE 2194829.434 2350669.985 2412001.401 1731708.849 2603981.286 2235283.021 2301999.983 2482465.71 2408405.696 2021804.776 1.08557931 1.16265923 1.192994215 0.856516351 1.287948924 1.105587961 1.138586678 1.227846397 1.191215752 1 20.94721227 TSSESIYSRPGSSIPGS(ph)PGHTIYAK ddPTM_HeLa_A486_30min_R1 3 TSSESIYSRPGSSIPGSPGHTIYAK 25 1 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;A0A0A0MRL6;A0A3B3IS55;O14639-6;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 TSSESIYSRPGSSIPGS(1)PGHTIYAK;TSSESIYSRPGSSIPGS(1)PGHTIYAK;TSSESIYSRPGSSIPGS(0.999)PGHTIYAK ;; 213.84 1.53E-29 2132910000 1445180 1312374 857919 339666 1410990 1298690 1498100 1485150 1218950 1148756 TRUE FALSE FALSE 1343880.345 1208376.705 1190128.213 790759.6138 1234010.477 1138470.832 1123259.535 1147013.766 1324609.567 861100.0205 1.56065534 1.403294247 1.382102177 0.918313314 1.433062882 1.322112188 1.304447228 1.332033142 1.538276084 1 19.7158213 -4.529641357 2.200682654 1.284786546 1.55965502 0.203590053 0.176977399 0.661438794 5.340688712 0.047219575 0.285134445 2.95E-05 4.529641357 0.274868474 TSSFT(ph)EQLDEGTPNR ddPTM_HeLa_A485_30min_R1 1 TSSFTEQLDEGTPNR 15 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71;C9J0Y3;C9JHJ5 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 TSS(0.335)FT(0.665)EQLDEGTPNR 328.59 1.41E-89 836600000 518390 434140 512780 771830 736970 493930 761730 545390 591530 984250 TRUE FALSE FALSE 633704.0671 484908.8965 702478.6606 813993.1185 663594.6791 519791.411 598980.1627 411632.2474 710244.6452 738894.5888 0.857637986 0.656262617 0.950715665 1.101636324 0.898091134 0.703471671 0.810643591 0.557091977 0.961225939 1 19.49500904 -6.233160693 22.46036195 0.779064698 0.894535946 0.057890253 0.155619267 490.8040059 389819.8154 0.052430776 0.052411486 5.85E-07 6.233160693 0.115471248 TSSFT(ph)EQLDEGTPNR ddPTM_HeLa_A486_30min_R1 1 TSSFTEQLDEGTPNR 15 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71;C9J0Y3;C9JHJ5 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 TSS(0.202)FT(0.798)EQLDEGTPNR 355.06 1.40E-103 671350000 531400 621630 397080 190590 597590 611550 726170 614230 496530 602440 TRUE FALSE FALSE 494151.6042 572369.7749 550840.0102 443703.1519 522634.6899 536103.1788 544474.5854 474383.2375 539569.6202 451585.1028 1.094260198 1.267468239 1.219792254 0.982546034 1.157333771 1.187158689 1.205696517 1.050484692 1.194834854 1 18.78463837 -13.96913643 0.26730229 3.57E-14 1.162547353 0.230821129 0.081707664 313.2578359 3.106394531 172.5699342 0.105350756 1.07E-14 13.96913643 1.162547353 TSSGDPPS(ph)PLVK ddPTM_HeLa_A485_30min_R1 3 TSSGDPPSPLVK 12 0 Q99618;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 TSS(0.001)GDPPS(0.999)PLVK;TSS(0.002)GDPPS(0.998)PLVK;TSSGDPPS(1)PLVK ;; 147.24 1.68E-07 925240000 2360770 1834770 1207920 3342010 2477180 1826230 3444400 2879750 1650940 5038800 TRUE FALSE FALSE 2885915.142 2049330.391 1654779.874 3524575.544 2230543.261 1921848.579 2708475.802 2173486.797 1982268.515 3782719.892 0.762920656 0.541761074 0.437457681 0.931756949 0.589666516 0.508059976 0.716012784 0.574583067 0.524032593 1 21.85099252 -10.47079444 5.172488498 1.000696965 0.619354469 0.403979747 0.138208228 0.001097299 0.000112267 0.132189941 0.032004399 3.38E-11 10.47079444 -0.381342496 TSSGDPPS(ph)PLVK ddPTM_HeLa_A486_30min_R1 4 TSSGDPPSPLVK 12 0 Q99618;F5GX58;F8WDL1 Q99618 CDCA3 Cell division cycle-associated protein 3 1 0 TSSGDPPS(1)PLVK;T(0.003)S(0.003)S(0.003)GDPPS(0.992)PLVK;TSS(0.002)GDPPS(0.997)PLVK;TSSGDPPS(1)PLVK ;;; 128.28 0.00020644 609180000 2300290 2109620 1120170 1093420 2010630 2722410 3210060 2930720 1875600 3521230 TRUE FALSE FALSE 2139051.55 1942446.028 1553929.823 2545537.018 1758438.037 2386546.734 2406869.035 2263459.033 2038178.518 2639491.089 0.81040302 0.735916873 0.588723269 0.964404475 0.666203438 0.904169271 0.911868597 0.857536153 0.772186171 1 21.33182836 -6.00177158 1.063003511 0.881550708 0.735441819 0.238081295 0.109289066 0.780291402 1.882483506 0.052352877 0.061276724 9.96E-07 6.00177158 -0.146108889 TSSISGPLS(ph)PAYTGQVPYNYNQLEGR ddPTM_HeLa_A485_30min_R1 1 TSSISGPLSPAYTGQVPYNYNQLEGR 26 0 Q01082-3 Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 TSSIS(0.002)GPLS(0.997)PAYTGQVPYNYNQLEGR 128.35 5.57E-06 106780000 33123 35876 38906 30192 53796 34900 49751 38054 32778 42245 TRUE FALSE FALSE 40491.09708 40071.38612 53298.94841 31841.31251 48439.88135 36727.31003 39121.29242 28721.19683 39356.24394 31714.09896 1.276753823 1.263519615 1.680607369 1.004011262 1.52739264 1.158075154 1.233561529 0.905628656 1.240969954 1 14.95283673 -6.738468635 1.742500752 1.060518928 1.343997048 0.290820559 0.190045673 0.451148913 2.802393342 0.09584079 0.060406102 1.83E-07 6.738468635 0.283478121 TSSKES(ph)S(ph)PIPS(ph)PTSDRK ddPTM_HeLa_A485_30min_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.359)S(0.386)S(0.457)KES(0.429)S(0.369)PIPS(0.934)PT(0.031)S(0.034)DRK 59.814 0.026892 1102100000 596850 394660 236940 1527900 703310 520250 1256700 984080 378100 2225700 TRUE FALSE FALSE 729617.2234 440812.0539 324593.9659 1611365.308 633285.9869 547489.4855 988195.7787 742732.837 453981.2019 1670873.951 0.436668022 0.26382125 0.19426598 0.96438472 0.379014818 0.32766654 0.591424493 0.444517575 0.271702842 1 20.67217147 -10.74774239 2.874075402 1.106437628 0.434867473 0.402413707 0.208176639 166945319.7 144077382 126509654.9 0.055828101 1.79E-11 10.74774239 -0.671570155 TSSPRS(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_A485_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 T(0.007)S(0.007)S(0.024)PRS(0.955)PPS(0.001)S(0.002)S(0.003)EIFTPAHEENVR;T(0.006)S(0.006)S(0.032)PRS(0.955)PPS(0.001)SSEIFTPAHEENVR ; 204.41 4.36E-29 2206800000 208881 352520 313090 252440 512590 362000 567150 684930 295630 349610 TRUE FALSE FALSE 255345.8578 393744.1475 428915.0198 266230.158 461554.7398 380953.7602 445973.7693 516949.8436 354960.2293 262458.6611 0.972899339 1.500213961 1.634219339 1.01436987 1.758580715 1.451481001 1.699215288 1.96964292 1.35244243 1 18.00173068 -5.781312392 24.99292551 1.590721274 1.321395578 0.125455421 0.308900492 458.6784941 576845.7257 0.092820171 0.105383263 1.65E-06 5.781312392 -0.269325696 TSSPRS(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_A486_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 T(0.005)S(0.005)S(0.03)PRS(0.951)PPS(0.009)SSEIFTPAHEENVR;T(0.033)S(0.033)S(0.192)PRS(0.725)PPS(0.007)S(0.01)S(0.002)EIFTPAHEENVR ; 225.17 2.05E-38 1836340000 382270 338960 327010 103875 532330 380440 526600 571430 289610 355460 TRUE FALSE FALSE 355474.847 312099.5751 453637.0296 241826.2496 465560.2076 333505.1808 394839.1102 441327.8632 314713.628 266450.5023 1.334112129 1.1713229 1.702518951 0.907584138 1.747267142 1.251659043 1.481847873 1.656322129 1.181133551 1 18.02350803 -7.996532373 24.7204759 0.999999962 1.40179874 0.22522305 0.246061308 94.07796725 670666.988 0.220850569 0.057023372 1.01E-08 7.996532373 0.401798778 TSSSKAS(ph)T(ph)LQLGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TSSSKASTLQLGSPR 15 1 Q7L8L6 Q7L8L6 FASTKD5 FAST kinase domain-containing protein 5 3 0 T(0.292)S(0.32)S(0.32)S(0.336)KAS(0.366)T(0.366)LQLGS(0.999)PR;T(0.284)S(0.307)S(0.326)S(0.34)KAS(0.372)T(0.372)LQLGS(1)PR ; 49.768 0.036238 2385500000 1988840 2299700 1531270 3397600 2554000 2335200 3818900 4250600 2404300 4472200 TRUE FALSE FALSE 2431250.597 2568629.91 2097750.494 3583202.285 2299714.792 2457467.461 3002960.817 3208133.685 2886820.956 3357362.845 0.724154853 0.765073669 0.624820906 1.067266915 0.684976542 0.73196362 0.894440356 0.955551674 0.85984777 1 21.67889703 -6.587666255 0.189836851 1.058491132 0.619079117 0.315259695 0.11530232 6.223763354 0.725487827 0.497937349 0.917990521 2.58E-07 6.587666255 -0.439412015 TSSSKAS(ph)T(ph)LQLGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TSSSKASTLQLGSPR 15 1 Q7L8L6 Q7L8L6 FASTKD5 FAST kinase domain-containing protein 5 3 0 T(0.112)S(0.123)S(0.393)S(0.417)KAS(0.478)T(0.478)LQLGS(1)PR;T(0.279)S(0.304)S(0.326)S(0.342)KAS(0.374)T(0.374)LQLGS(1)PR ; 58.997 0.021276 2757500000 2250900 2557500 1469310 1266990 2610000 2455800 3405400 3573400 2120430 3850600 TRUE FALSE FALSE 2093123.534 2354834.386 2038266.181 2949616.75 2282629.463 2152828.365 2553332.901 2759814.827 2304230.58 2886384.697 0.725171366 0.815842181 0.706165808 1.021907008 0.790826485 0.745856353 0.884612818 0.956149341 0.798310281 1 21.46083216 -9.601355196 0.028689875 1.88597544 6.82E-11 0.311773916 0.090372429 668.6866084 4.324779086 162.9338679 122.3873185 2.50E-10 9.601355196 -1.88597544 TSSSS(ph)PANS(ph)DVEIDGIGR ddPTM_HeLa_A485_30min_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 0 T(0.002)S(0.003)S(0.004)S(0.122)S(0.869)PANS(1)DVEIDGIGR 151.58 5.86E-08 179590000 180860 224110 234070 253700 333630 231350 337240 342920 236750 343430 TRUE FALSE FALSE 221091.683 250317.715 320662.2335 267558.9886 300412.6258 243463.1283 265185.919 258818.3323 284263.5534 257819.2214 0.857545383 0.970904007 1.243748359 1.037777506 1.165206474 0.944317212 1.028573113 1.003875238 1.102569281 1 17.9760003 -4.524779527 24.99821154 1.065753453 0.885884975 0.381097119 0.082943263 50.94577323 670028.9728 0.021078414 0.056627772 2.99E-05 4.524779527 -0.179868478 TSSSSDDSKRS(ph)PLGK ddPTM_HeLa_A486_30min_R1 2 TSSSSDDSKRSPLGK 15 2 Q9C0B5;Q9C0B5-2 Q9C0B5 ZDHHC5 Palmitoyltransferase ZDHHC5 1 0 T(0.004)S(0.003)S(0.003)S(0.003)S(0.003)DDS(0.309)KRS(0.675)PLGK;TSSSSDDS(0.016)KRS(0.983)PLGK ; 91.414 0.00050007 329830000 532230 473270 215385 296455 578430 859120 899350 778950 605890 1691630 TRUE FALSE FALSE 494923.4254 435766.3616 298787.8402 690162.222 505877.9158 753130.5093 674323.1176 601600.0894 658409.033 1268034.837 0.390307435 0.343654881 0.235630624 0.54427702 0.398946386 0.593935188 0.531785956 0.474434985 0.51923576 1 20.27416295 -14 0.142653728 2.937384377 0.255364167 0.814895108 0.083790885 57.40825796 0.497104857 31.50539881 0.506546846 1.00E-14 14 -2.68202021 TSSTCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_A485_30min_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 TSSTCS(1)NESLSVGGTSVTPR 266.28 4.33E-59 348360000 121210 174440 174640 192170 252820 186820 263140 287450 220230 275530 TRUE FALSE FALSE 148172.7463 194839.2406 239246.6034 202667.7605 227648.3531 196601.6063 206917.9893 216952.4368 264428.1409 206845.4418 0.716345234 0.941955689 1.156644311 0.979802885 1.100572249 0.950475895 1.000350733 1.048862547 1.278385149 1 17.65819364 -4.369144123 3.085566462 1.058068802 0.698900133 0.565822504 0.092770277 0.213857098 3.252782112 0.023557119 0.159842778 4.27E-05 4.369144123 -0.359168668 TSSTCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_A486_30min_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 TSSTCS(1)NESLSVGGTSVTPR 372.52 5.28E-142 341440000 157760 195910 138020 70203 214210 194930 205720 225590 175440 226920 TRUE FALSE FALSE 146701.8387 180385.3781 191465.0403 163436.1319 187341.7844 170881.5185 154246.6801 174228.0816 190647.2805 170097.755 0.862456055 1.060480652 1.12561768 0.960836502 1.101377172 1.004607724 0.906811969 1.024282076 1.120810092 1 17.37600457 -4.255519382 24.42621076 1.032437649 0.862455951 0.370842506 0.066957473 543.0719162 2240652.579 0.01704583 0.147112318 5.55E-05 4.255519382 -0.169981697 TSSVSNPQDSVGS(ph)PCSR ddPTM_HeLa_A485_30min_R1 3 TSSVSNPQDSVGSPCSR 17 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 TSSVSNPQDSVGS(1)PCSR;TSSVSNPQDSVGS(1)PCSR;TSSVSNPQDSVGS(1)PCSR ;; 425.17 1.45E-172 2369160000 928299 1033628 951147 1051064 1545135 882677 1197275 1177381 848335 1369915 TRUE FALSE FALSE 1134795.91 1154501.803 1303015.856 1108480.965 1391295.934 928892.6028 941467.4154 888626.4637 1018588.053 1028420.402 1.10343582 1.122597141 1.267007007 1.077848089 1.352847465 0.903222652 0.91544996 0.864069268 0.990439368 1 19.97199871 -6.285256772 24.88128248 0.924941404 1.179925494 0.686246516 0.084399769 407.1392185 425324.0655 0.028336175 0.025003152 5.18E-07 6.285256772 0.254984091 TSSVSNPQDSVGS(ph)PCSR ddPTM_HeLa_A486_30min_R1 2 TSSVSNPQDSVGSPCSR 17 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 TSSVSNPQDSVGS(1)PCSR;TSSVSNPQDSVGS(1)PCSR ; 399.62 1.26E-136 2044400000 822710 916340 621700 345960 943270 927010 1006120 1045470 671130 912740 TRUE FALSE FALSE 765042.2775 843725.8811 862438.8897 805412.3639 824956.281 812644.9313 754378.1343 807439.3034 729304.0888 684183.9631 1.118182125 1.233185703 1.260536546 1.177186849 1.205752145 1.187757935 1.102595464 1.180149415 1.065947359 1 19.38402476 -7.85786001 0.602438065 0.997180244 1.206697533 0.668951669 0.043836377 0.464349867 0.405236332 0.044339998 0.020222716 1.39E-08 7.85786001 0.209517289 TSSVSSISQVS(ph)PER ddPTM_HeLa_A485_30min_R1 2 TSSVSSISQVSPER 14 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 TSSVSSISQVS(1)PER;TSSVSSISQVS(1)PER ; 260.29 8.98E-54 412500000 168616 182190 156619 214970 253720 190847 238250 291870 169545 307180 TRUE FALSE FALSE 206124.0475 203495.5357 214558.8856 226713.2668 228458.7459 200839.4538 187345.9412 220288.4249 203571.1263 230605.6792 0.893837689 0.882439393 0.930414577 0.983120917 0.990690024 0.870921542 0.812408184 0.95526019 0.882767185 1 17.81506852 -4.709239189 0.004885569 1.818896701 5.31E-07 0.064080479 0.056575157 117671.2344 103.9685558 18766.63308 19951.55232 1.95E-05 4.709239189 -1.81889617 TSSVSSISQVS(ph)PER ddPTM_HeLa_A486_30min_R1 2 TSSVSSISQVSPER 14 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 TSSVSSISQVS(1)PER;TSSVSSISQVS(1)PER ; 291.06 1.98E-68 354780000 278330 190930 162952 95277 249630 235530 294210 298560 182672 317460 TRUE FALSE FALSE 258820.5043 175800.0114 226051.3784 221809.671 218319.0777 206472.7033 220595.5462 230584.4055 198506.156 237965.9497 1.087636717 0.738761204 0.949931613 0.932106763 0.917438306 0.867656501 0.927004668 0.968980671 0.834178824 1 17.86039563 -10.72520936 2.604138215 1.017133056 0.910969574 0.081918103 0.086179419 40778832.19 31140226.5 4527605.964 0.019856244 1.88E-11 10.72520936 -0.106163482 TST(ph)PS(ph)PQPSKR ddPTM_HeLa_A486_30min_R1 1 TSTPSPQPSKR 11 1 Q8IY18 Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 2 0 T(0.288)S(0.332)T(0.384)PS(0.997)PQPSKR 50.563 0.0092623 0 255000 243350 136280 135270 243730 274420 369170 320330 189670 361730 TRUE FALSE FALSE 237125.8168 224066.0597 189051.2657 314915.3962 213159.1107 240564.8505 276799.7613 247397.8518 206110.7483 271150.4535 0.8745175 0.826353254 0.697219065 1.161404645 0.786128542 0.88720062 1.020834587 0.912400656 0.760134256 1 18.04873406 TST(ph)PSPQPSKR ddPTM_HeLa_A485_30min_R1 1 TSTPSPQPSKR 11 1 Q8IY18 Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 1 0 TS(0.006)T(0.99)PS(0.004)PQPSKR 142.76 1.60E-05 0 74172 76133 53693 85997 106050 90370 120850 117420 69155 119200 TRUE FALSE FALSE 90671.30551 85036.09208 73556.27505 90694.79835 95491.28964 95101.63346 95029.41025 88622.56089 83033.77417 89485.63371 1.013249856 0.95027647 0.821989765 1.013512388 1.067113074 1.062758674 1.061951582 0.99035518 0.927900611 1 16.44936847 -5.4861259 24.82930975 1.023905852 0.92852721 0.322349919 0.058939979 619.9400328 418815.8354 0.017494452 0.025938415 3.26E-06 5.4861259 -0.095378641 TST(ph)PSPQPSKR ddPTM_HeLa_A486_30min_R1 1 TSTPSPQPSKR 11 1 Q8IY18 Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 1 0 T(0.012)S(0.074)T(0.72)PS(0.193)PQPS(0.001)KR 69.451 0.018298 52251000 69435 69964 41844 27647 73995 70693 90655 82599 58667 84033 TRUE FALSE FALSE 64567.96506 64419.79784 58047.11742 64363.6132 64713.85712 61971.61641 67972.16015 63793.01082 63752.3028 62990.58984 1.025041442 1.02268923 0.921520462 1.021797277 1.027357535 0.983823402 1.079084357 1.012738744 1.012092488 1 15.9428487 -5.423936289 24.527982 1.021413171 0.989480101 0.12945559 0.035186869 73.44131747 18194.31642 0.009943168 0.014748097 3.77E-06 5.423936289 -0.03193307 TSTDRHS(ph)LSLDDIR ddPTM_HeLa_A485_30min_R1 4 TSTDRHSLSLDDIR 14 1 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 0 T(0.001)S(0.001)T(0.001)DRHS(0.998)LSLDDIR;T(0.002)S(0.002)T(0.002)DRHS(0.991)LS(0.001)LDDIR;TSTDRHS(0.999)LSLDDIR;T(0.009)S(0.009)T(0.009)DRHS(0.964)LS(0.009)LDDIR ;;; 116.82 7.27E-05 1301660000 1095790 1351900 1233170 929590 1778460 1190370 1725930 1729320 1195700 1686530 TRUE FALSE FALSE 1339544.705 1509992.945 1689370.899 980371.1479 1601390.278 1252695.933 1357170.956 1305201.559 1435666.022 1266109.109 1.058001001 1.192624659 1.334301197 0.774318059 1.264812224 0.989405987 1.07192259 1.030876051 1.133919669 1 20.27197031 -5.207519239 24.99998592 1.048030849 1.194740343 0.22692188 0.131938738 493.1184222 228632.5483 0.03382193 0.058581271 6.20E-06 5.207519239 0.146709494 TSTDRHS(ph)LSLDDIR ddPTM_HeLa_A486_30min_R1 3 TSTDRHSLSLDDIR 14 1 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 0 T(0.021)S(0.021)T(0.021)DRHS(0.937)LS(0.001)LDDIR;T(0.005)S(0.005)T(0.005)DRHS(0.983)LS(0.001)LDDIR;T(0.003)S(0.003)T(0.003)DRHS(0.991)LS(0.001)LDDIR ;; 104.88 0.00018322 845920000 1308410 1374480 1120390 188839 1641330 1295010 1598760 1521470 1205340 1123190 TRUE FALSE FALSE 1216697.216 1265561.199 1554235.013 439626.7354 1435459.087 1135244.833 1198733.338 1175064.494 1309819.842 841935.9133 1.445118561 1.503156213 1.846025319 0.522161757 1.704950536 1.348374401 1.423782166 1.395669761 1.555723923 1 19.6833509 -11.2122246 1.818936384 9.37E-05 1.411147409 0.123871902 0.33175244 3100963.451 523680.4953 12731268.67 0.085439072 6.13E-12 11.2122246 1.4110537 TSTLPPLPLPPLLPGDDDMDS(ph)PKETLPSKPVKK ddPTM_HeLa_A486_30min_R1 1 TSTLPPLPLPPLLPGDDDMDSPKETLPSKPVKK 33 3 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 TSTLPPLPLPPLLPGDDDMDS(0.895)PKET(0.09)LPS(0.014)KPVKK 125.14 3.54E-06 229460000 80358 60752 14425 80547 44607 91554 140590 128910 49435 217200 TRUE FALSE FALSE 74725.31917 55937.79027 20010.74631 187517.4866 39011.97412 80258.99833 105412.895 99560.00709 53720.0656 162811.7063 0.45896773 0.343573515 0.122907294 1.151744496 0.239614061 0.492955944 0.647452799 0.611503984 0.329952107 1 17.31284491 -14 0.228691976 3.638581703 0.438394965 0.238922842 0.270044818 239.4905844 2.398020539 293.1408115 0.469855335 1.00E-14 14 -3.200186738 TSTS(ph)PPPEK ddPTM_HeLa_A485_30min_R1 8 TSTSPPPEK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 T(0.006)S(0.003)T(0.021)S(0.971)PPPEK;T(0.011)S(0.005)T(0.026)S(0.958)PPPEK;TST(0.001)S(0.999)PPPEK;TST(0.006)S(0.994)PPPEK;TST(0.001)S(0.999)PPPEK;TST(0.001)S(0.999)PPPEK;T(0.002)S(0.005)T(0.067)S(0.926)PPPEK;TST(0.002)S(0.998)PPPEK ;;;;;;; 189.58 1.70E-08 36609030000 37937390 36304160 20780020 43295310 29154450 30046040 40973790 34772630 23816530 50084310 TRUE FALSE FALSE 46376431.52 40549615.71 28467414.13 45660423.16 26251730.59 31619204.19 32219405.04 26244587.97 28596289.11 37599213.25 1.233441541 1.078469792 0.75712792 1.214398367 0.698198933 0.840953878 0.856917001 0.698008966 0.760555518 1 25.16419914 -1 0.476001774 0.805386413 12.72698034 0.403414259 0.14991096 90.28055298 1.024505221 0.084312308 1062.289544 0.1 1 11.92159392 TSTS(ph)PPPEK ddPTM_HeLa_A486_30min_R1 5 TSTSPPPEK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TST(0.004)S(0.996)PPPEK;TST(0.025)S(0.974)PPPEK;T(0.002)S(0.012)T(0.049)S(0.937)PPPEK;TST(0.019)S(0.981)PPPEK;TST(0.009)S(0.991)PPPEK ;;;; 197.73 1.07E-09 30458500000 36265100 32499200 13245300 10235990 21437900 30763900 32811300 28842000 24973400 44705200 TRUE FALSE FALSE 33723103.76 29923845.03 18374234.88 23829902.02 18748958.68 26968562.8 24601565.7 22275306.22 27138114.42 33510726.94 1.006337577 0.892963172 0.548309051 0.711112655 0.559491255 0.804774031 0.734140019 0.664721665 0.809833653 1 24.99811965 -9.201775492 13.15320188 0.999999999 0.738545914 0.238993457 0.133976797 0 0 0.134312432 0.03257555 6.28E-10 9.201775492 -0.261454085 TSTS(ph)PPPEKS(ph)GDEGS(ph)EDEAPS(ph)GED ddPTM_HeLa_A486_30min_R1 1 TSTSPPPEKSGDEGSEDEAPSGED 24 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 4 0 T(0.002)S(0.01)T(0.052)S(0.936)PPPEKS(1)GDEGS(1)EDEAPS(1)GED 157.96 1.92E-10 184070000 149020 124260 61128 135250 127320 180980 243670 218630 115670 287430 TRUE FALSE FALSE 138574.4675 114413.1851 84798.39866 314868.8352 111350.3384 158652.5277 182701.1887 168852.7217 125696.3687 215455.6571 0.643169316 0.531028921 0.393577035 1.461408994 0.51681325 0.736358143 0.847975825 0.783700572 0.583397857 1 17.71703145 TSTTGVATTQS(ph)PTPR ddPTM_HeLa_A485_30min_R1 5 TSTTGVATTQSPTPR 15 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 TSTTGVATTQS(1)PTPR;TSTTGVATTQS(0.914)PT(0.085)PR;TSTTGVATTQS(0.992)PT(0.008)PR;TSTTGVATTQS(0.911)PT(0.089)PR;TSTTGVAT(0.001)T(0.004)QS(0.988)PT(0.007)PR ;;;; 337.45 1.34E-90 1464459000 1023882 1297362 1229628 1382986 1640327 1196989 1454296 1565293 1315082 1860443 TRUE FALSE FALSE 1251641.019 1449077.2 1684518.566 1458535.023 1477010.284 1259661.493 1143573.779 1181402.437 1579006.895 1396668.799 0.896161652 1.037523858 1.206097371 1.044295558 1.057523649 0.901904227 0.818786659 0.845871575 1.130552137 1 20.41355852 -6.256234508 23.90242576 0.922250126 1.056262402 0.195044542 0.107222105 340.9870498 1565921.179 0.036989982 0.035915041 5.54E-07 6.256234508 0.134012276 TSTTGVATTQS(ph)PTPR ddPTM_HeLa_A486_30min_R1 1 TSTTGVATTQSPTPR 15 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 TSTTGVATTQS(0.894)PT(0.106)PR 187.04 6.01E-18 72412000 122620 126530 99133 42862 136460 115400 126430 147760 106790 128900 TRUE FALSE FALSE 114024.9712 116503.302 137519.9525 99784.90213 119343.9144 101163.1213 94795.87676 114118.2736 116046.6432 96622.601 1.180106621 1.205756218 1.423268998 1.032728379 1.235155265 1.046992321 0.981094234 1.181072258 1.201030007 1 16.56007307 -5.283363508 24.99410038 1.103272145 1.263315213 0.377996365 0.101272396 879.9820243 1003201.383 0.028898561 0.0429004 5.21E-06 5.283363508 0.160043068 TSVLFSK(ac)K ddPTM_HeLa_A485_30min_R1 1 TSVLFSKK 8 1 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 0 1 TSVLFSK(1)K 144.09 0.0010613 49926000 79144 68499 58816 88356 101480 73630 89181 78550 65632 139660 FALSE TRUE FALSE 96749.30976 76509.36219 80574.48594 93182.66455 91376.29488 77485.15295 70126.75081 59285.48934 78803.74039 104845.3323 0.922781279 0.729735512 0.768508089 0.888763119 0.87153422 0.739042466 0.668859064 0.56545664 0.751618968 1 16.67790311 -6.414068713 5.197853367 0.709469915 0.828959305 0.099250599 0.116774116 0.388556556 15.43322492 0.040898888 0.035674759 3.85E-07 6.414068713 0.11948939 TSVLFSK(ac)K ddPTM_HeLa_A486_30min_R1 2 TSVLFSKK 8 1 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 0 1 ; TSVLFSK(1)K;TSVLFSK(1)K 168.27 0.00015963 127498000 333640 336340 189373 134518 302950 293180 359560 334190 277240 363150 FALSE TRUE FALSE 310253.5589 309687.1935 262703.2972 313164.7022 264951.1861 257010.4324 269594.285 258102.2323 301271.3864 272214.8763 1.139737707 1.137657125 0.965058562 1.150431991 0.973316336 0.944145434 0.990373078 0.948156235 1.106741081 1 18.05438639 -4.446038524 0.739399664 0.994901027 1.221593022 0.335310801 0.067074837 2.493450998 1.242982809 0.027868591 0.450901532 3.58E-05 4.446038524 0.226691995 TSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR ddPTM_HeLa_A485_30min_R1 5 TSVLGGGEDGIEPVSPPEGMTEPGHSR 27 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR ;;;; 186.43 1.99E-20 3014582000 469940 444442 467393 626929 702166 368339 560611 434929 480044 879865 TRUE FALSE FALSE 574476.5317 496415.6258 640301.1205 661176.5438 632255.8876 387624.6605 440831.8801 328261.9808 576384.4276 660530.8482 0.869719459 0.751540412 0.969373531 1.00097754 0.95719358 0.586838089 0.667390299 0.496966919 0.872607887 1 19.33326641 -6.252472464 24.81008638 0.689735424 0.909350287 0.266409017 0.147890233 680.8927268 1883927.273 0.048285392 0.047598833 5.59E-07 6.252472464 0.219614863 TSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR ddPTM_HeLa_A486_30min_R1 4 TSVLGGGEDGIEPVSPPEGMTEPGHSR 27 0 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(0.999)PPEGMT(0.001)EPGHSR;TSVLGGGEDGIEPVS(0.999)PPEGMT(0.001)EPGHSR ;;; 170.32 4.31E-14 1958660000 488357 559714 445004 147615 565375 592589 606579 579929 541176 551660 TRUE FALSE FALSE 454125.6962 515360.2242 617321.4664 343655.18 494460.3956 519481.3942 454806.5185 447891.8265 588085.5714 413520.7453 1.098193262 1.246274171 1.492842798 0.831047013 1.195732986 1.256240225 1.099839666 1.083118154 1.42214285 1 18.65760018 -10.2393161 3.831289094 0.999790718 1.187687894 0.095994612 0.17610772 39382301.21 31.7833418 79406.06352 0.041701055 5.76E-11 10.2393161 0.187897176 TSVSSVSAS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 TSVSSVSASPSR 12 0 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 TSVSSVSAS(0.99)PS(0.01)R;TSVSSVSAS(0.99)PS(0.01)R ; 158.34 2.14E-08 863490000 413760 589190 690610 462930 787140 484760 599740 575970 549460 653120 TRUE FALSE FALSE 505799.4845 658090.6452 946095.3777 488218.6937 708769.5778 510141.284 471600.6496 434712.4544 659731.5821 490309.2038 1.031592882 1.34219517 1.929589268 0.995736343 1.445556339 1.040448109 0.961843355 0.886608799 1.345541909 1 18.90333232 -6.272134131 23.05166976 1.034486093 1.361196151 0.24507828 0.26417283 357.3426235 770218.8815 0.092782753 0.082794867 5.34E-07 6.272134131 0.326710058 TSVSSVSAS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 TSVSSVSASPSR 12 0 P12036;P12036-2 P12036 NEFH Neurofilament heavy polypeptide 1 0 TSVSSVS(0.002)AS(0.754)PS(0.245)R;TSVSSVSAS(0.989)PS(0.011)R;TSVSSVSAS(0.992)PS(0.008)R ;; 180.61 8.14E-13 1381890000 623280 847821 1278650 208700 1196120 614854 716085 818104 810471 632816 TRUE FALSE FALSE 579591.2906 780636.5762 1773777.523 485864.1471 1046091.476 538999.5649 536912.959 631839.5783 880723.2788 474354.7547 1.221851968 1.645680935 3.739348043 1.024263259 2.20529354 1.136279461 1.131880631 1.331997987 1.856676401 1 18.85560688 -6.26366313 24.78907091 1.302148865 1.995478089 0.179349256 0.721485163 326.8002173 3642956.833 0.249781401 0.231021683 5.45E-07 6.26366313 0.693329224 TSYAQHQQVR ddPTM_HeLa_A485_30min_R1 1 TSYAQHQQVR 10 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09;D6RAS7;H0Y8L7;E9PFI5 D6R9B6 RPS3A 40S ribosomal protein S3a 0 0 70.808 0.034237 10728000 2652.8 5711 9319.6 2126.7 5515.8 4695.2 4226 4995.6 7050.3 2726.2 FALSE FALSE TRUE 3242.906208 6378.851771 12767.30786 2242.876236 4966.627585 4941.033412 3323.080577 3770.421267 8465.230541 2046.608512 1.584526884 3.116791381 6.23827556 1.095899007 2.426759957 2.414254306 1.623701141 1.842277722 4.136223655 1 10.99901945 TT(ph)PDIIKDWPR ddPTM_HeLa_A486_30min_R1 1 TTPDIIKDWPR 11 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 T(0.101)T(0.899)PDIIKDWPR 113.35 0.00051618 68648000 82580 69584 27742 36144 55484 67856 106920 76129 57396 103160 TRUE FALSE FALSE 76791.56844 64069.91042 38484.44536 84145.05862 48524.67935 59484.61663 80167.48512 58796.08858 62371.13149 77328.06454 0.993062078 0.828546671 0.497677597 1.088156792 0.627517055 0.769250039 1.036719147 0.760346052 0.806578205 1 16.23870448 TT(ph)PDQELAPASEPVWERPWSVEEIR ddPTM_HeLa_A485_30min_R1 2 TTPDQELAPASEPVWERPWSVEEIR 25 1 Q641Q2;E7ESD2;Q641Q2-2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.213)T(0.787)PDQELAPASEPVWERPWSVEEIR;T(0.206)T(0.794)PDQELAPASEPVWERPWSVEEIR ; 147.23 4.92E-09 158929000 6770.7 7308.9 10390.9 8528.5 8018.6 6777.3 9593.4 10662.8 5051 11642.9 TRUE FALSE FALSE 8276.818856 8163.612276 14234.92631 8994.39036 7220.240029 7132.148948 7543.691719 8047.731581 6064.689369 8740.539302 0.946946015 0.933994116 1.628609611 1.029042951 0.826063448 0.815984998 0.863069367 0.920736273 0.693857571 1 13.09350658 -5.5347851 8.716025262 0.854642406 1.17640412 0.356373138 0.192269095 0.17541189 96.91602279 0.057649432 0.076115739 2.92E-06 5.5347851 0.321761714 TT(ph)PNSGDVQVTEDAVR ddPTM_HeLa_A485_30min_R1 2 TTPNSGDVQVTEDAVR 16 0 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 0 T(0.231)T(0.769)PNSGDVQVTEDAVR;T(0.196)T(0.804)PNSGDVQVTEDAVR ; 187.5 3.49E-17 985750000 804000 682350 808550 787100 1168110 680300 886150 749480 935450 1123890 TRUE FALSE FALSE 982847.0262 762144.8968 1107666.292 830097.28 1051808.867 715919.4561 696816.8133 565668.8549 1123186.235 843724.9067 1.164890379 0.903309705 1.312828723 0.983848258 1.246625362 0.848522368 0.825881526 0.670442286 1.331223276 1 19.68641316 -6.274695389 24.858277 0.907783257 1.113027447 0.181587348 0.193773939 1155.518641 2166874.756 0.065440019 0.058046343 5.31E-07 6.274695389 0.20524419 TT(ph)PPEAAQNGQS(ph)PMAALILVADNAGGSHASK ddPTM_HeLa_A485_30min_R1 2 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 T(0.481)T(0.519)PPEAAQNGQS(0.999)PMAALILVADNAGGSHASK;T(0.475)T(0.525)PPEAAQNGQS(1)PMAALILVADNAGGSHASK ; 78.667 0.001665 135960000 38805 38688 36382 24601 57365 28080 44806 38233 38993 60466 TRUE FALSE FALSE 47437.03837 43212.22506 49841.21578 25944.89034 51653.53918 29550.22538 35232.83207 28856.2968 46818.53744 45392.93899 1.045031219 0.951959182 1.097994906 0.57156225 1.137920133 0.650987269 0.776174287 0.635700121 1.031405731 1 15.47018028 -5.22017892 24.97308141 0.817167759 1.023691541 0.211977458 0.177729743 737.2275433 446209.3975 0.045465424 0.078747482 6.02E-06 5.22017892 0.206523782 TT(ph)PPEAAQNGQS(ph)PMAALILVADNAGGSHASK ddPTM_HeLa_A486_30min_R1 3 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 T(0.483)T(0.526)PPEAAQNGQS(0.991)PMAALILVADNAGGSHASK;T(0.499)T(0.539)PPEAAQNGQS(0.963)PMAALILVADNAGGSHASK;T(0.465)T(0.535)PPEAAQNGQS(1)PMAALILVADNAGGSHASK ;; 116.55 7.78E-05 170320000 79990.3 75163.6 42867.5 9620.2 62786.6 64460 72482.2 64388.6 71241.8 46941.1 TRUE FALSE FALSE 74383.39304 69207.36259 59466.94403 22396.31178 54911.31917 56507.58058 54346.38692 49728.72137 77417.09659 35186.74302 2.113960732 1.966859011 1.690038319 0.636498575 1.560568397 1.605933818 1.544513139 1.413280034 2.200177963 1 15.10274436 -4.856624104 3.901153786 1.441333099 2.048118393 0.28415289 0.386587823 0.283422284 8.033034717 0.103633583 0.243250286 1.39E-05 4.856624104 0.606785294 TT(ph)PTQPSEQK ddPTM_HeLa_A485_30min_R1 2 TTPTQPSEQK 10 0 O95104-2;O95104-3;O95104 O95104-2 SCAF4 "Splicing factor, arginine/serine-rich 15" 1 0 T(0.229)T(0.771)PTQPSEQK;T(0.171)T(0.828)PTQPSEQK ; 115.04 0.002457 554490000 768940 660340 466070 1199990 952080 690200 1075930 935590 596410 1671570 TRUE FALSE FALSE 939988.0502 737561.0188 638488.6878 1265542.415 857287.5722 726337.8047 846048.766 706135.0856 716104.0164 1254878.362 0.749067064 0.58775499 0.508805241 1.008498077 0.683163881 0.578811323 0.674207789 0.562711978 0.570656119 1 20.2591161 -10.12119381 4.994402423 1.000013957 0.658087726 0.365922581 0.134985497 2.15E-05 3.78E-06 0.134007693 0.032500314 7.56E-11 10.12119381 -0.341926232 TT(ph)PTQPSEQK ddPTM_HeLa_A486_30min_R1 2 TTPTQPSEQK 10 0 O95104-2;O95104-3;O95104 O95104-2 SCAF4 "Splicing factor, arginine/serine-rich 15" 1 0 T(0.178)T(0.822)PTQPSEQK;T(0.116)T(0.884)PTQPSEQK ; 213.84 4.88E-14 568600000 1417580 1377100 603970 733450 1142840 1582790 1966750 1787740 1042050 2346100 TRUE FALSE FALSE 1318214.962 1267973.581 837843.3589 1707508.667 999494.3506 1387521.462 1474648.348 1380710.628 1132375.733 1758621.289 0.749572958 0.721004339 0.476420571 0.970935969 0.568339731 0.788982523 0.838525245 0.785109697 0.643899707 1 20.74601341 -14 0.210507361 2.284066549 0.691125034 0.271727012 0.132663725 194.1004176 1.935525887 105.4608502 0.272859865 1.00E-14 14 -1.592941514 TT(ph)SPEPR ddPTM_HeLa_A485_30min_R1 1 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 T(0.04)T(0.665)S(0.295)PEPR 102.46 0.019328 5354500000 5801500 7510600 4097200 7702000 4915500 7098400 7590800 10179000 6368600 10157000 TRUE FALSE FALSE 7092023.66 8388899.336 5612924.779 8122740.758 4426095.561 7470061.248 5968963.569 7682584.29 7646719.604 7625046.826 0.930095752 1.100176763 0.736116762 1.065270934 0.580467984 0.979674147 0.782810087 1.007545851 1.002842314 1 22.86231477 -7.303724465 23.41638013 1.003895765 0.884059365 0.125621529 0.146677085 521.7586523 288932.1453 0.076892136 0.03693859 4.97E-08 7.303724465 -0.119836401 TT(ph)SPEPR ddPTM_HeLa_A486_30min_R1 1 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 T(0.179)T(0.581)S(0.24)PEPR 105.57 0.016658 3739400000 9370800 4910600 6876000 3042700 5006900 11284000 7278400 5863700 9955500 10856000 TRUE FALSE FALSE 8713955.311 4521466.172 9538571.346 7083559.37 4378887.915 9891894.807 5457267.337 4528663.514 10818450.76 8137586.939 1.070827922 0.555627388 1.172162143 0.870474186 0.538106437 1.215580845 0.670624766 0.556511844 1.329442111 1 22.95616962 -7.773528337 24.99997192 1.164721006 0.832410725 0.217444848 0.253046885 377.9930356 781665.0071 0.22627149 0.060217691 1.68E-08 7.773528337 -0.332310281 TT(ph)SPLEEEER ddPTM_HeLa_A485_30min_R1 1 TTSPLEEEER 10 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TT(0.5)S(0.5)PLEEEER 196.48 2.12E-10 850400000 700740 939990 822730 795230 909310 857130 1005200 1103200 781490 1036600 TRUE FALSE FALSE 856617.1955 1049913.654 1127092.064 838671.4013 818775.9036 902008.0014 790430.8083 832638.4702 938327.8747 778194.6972 1.100774907 1.349165777 1.448341999 1.077714105 1.052147883 1.159103248 1.015723714 1.069961635 1.20577521 1 19.56977162 -5.287475053 24.3488731 1.084925546 1.30440138 0.501767972 0.098815494 418.9187324 391776.8428 0.027709002 0.041116901 5.16E-06 5.287475053 0.219475834 TT(ph)SPSSDTDLLDR ddPTM_HeLa_A486_30min_R1 2 TTSPSSDTDLLDR 13 0 C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6;K7ENU0;K7ERZ4;K7EJ43 C9J9G2 PHF12 PHD finger protein 12 1 0 T(0.138)T(0.718)S(0.141)PS(0.001)S(0.001)DTDLLDR;T(0.018)T(0.669)S(0.313)PSSDTDLLDR ; 134.99 5.94E-05 92378000 157619 173319 134254 64056 184560 174641 203082 181495 145417 240910 TRUE FALSE FALSE 146570.722 159584.5712 186240.7442 149125.6052 161410.7638 153095.569 152268.7356 140172.5505 158021.8626 180584.5679 0.811645888 0.883711012 1.031321482 0.825793737 0.893823684 0.847777697 0.843199047 0.776215554 0.875057401 1 17.46231509 TT(ph)TPPDSGVLFEGLGISTRPR ddPTM_HeLa_A486_30min_R1 1 TTTPPDSGVLFEGLGISTRPR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 T(0.038)T(0.847)T(0.115)PPDSGVLFEGLGISTRPR 145.25 6.19E-12 0 56634 59077 41603 31671 59570 56602 65898 71702 43951 65125 TRUE FALSE FALSE 52664.24906 54395.52337 57712.79577 73731.68856 52098.17513 49619.02073 49409.6234 55377.01984 47760.70807 48817.27611 1.078803515 1.114267892 1.182220729 1.510360562 1.067207745 1.016423379 1.012133969 1.134373408 0.978356678 1 15.57510418 -5.972142682 24.99909826 1.036333172 1.220688462 0.390250936 0.114944173 243.6711472 218668.9212 0.037318955 0.042314965 1.07E-06 5.972142682 0.18435529 TTAGS(ph)VDWTDQLGLR ddPTM_HeLa_A485_30min_R1 2 TTAGSVDWTDQLGLR 15 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 T(0.001)T(0.006)AGS(0.993)VDWTDQLGLR;TTAGS(1)VDWTDQLGLR ; 180.1 1.02E-17 125885000 108133 110490 112494 124412 155210 109409 152546 141050 99648 160357 TRUE FALSE FALSE 132186.8128 123410.8444 154110.2119 131208.3125 139756.7474 115137.4861 119953.3009 106457.2663 119646.4396 120382.9511 1.098052603 1.025152177 1.280166423 1.089924374 1.160934719 0.956426845 0.996430972 0.884321787 0.993881929 1 16.87727156 -6.266742067 24.73171249 0.960871075 1.130996328 0.590518752 0.068474847 268.5120652 1252334.818 0.023606851 0.021438076 5.41E-07 6.266742067 0.170125253 TTAGS(ph)VDWTDQLGLR ddPTM_HeLa_A486_30min_R1 2 TTAGSVDWTDQLGLR 15 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 TTAGS(1)VDWTDQLGLR;TTAGS(1)VDWTDQLGLR ; 159.18 4.18E-09 85139000 119657 144245 118224 61232 150043 137333 162847 159453 119649 160291 TRUE FALSE FALSE 111269.6622 132814.5009 164003.4989 142551.1905 131223.2078 120390.2508 122100.9582 123149.0327 130020.2717 120153.0903 0.926065755 1.10537732 1.364954481 1.186413018 1.09213344 1.001973819 1.016211551 1.024934377 1.082121744 1 16.87451423 -6.003901609 4.18530757 1.026992069 1.157700833 0.232749982 0.1023763 0.320412855 13.36749046 0.036195709 0.038993677 9.91E-07 6.003901609 0.130708764 TTAPTEGKS(ph)PLK ddPTM_HeLa_A485_30min_R1 2 TTAPTEGKSPLK 12 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 TTAPT(0.01)EGKS(0.99)PLK;TTAPTEGKS(1)PLK ; 104.45 0.00028879 596110000 494340 338373 186480 886360 378454 365779 636910 488100 296502 1159930 TRUE FALSE FALSE 604304.2275 377942.7789 255466.7121 934779.6024 340773.7909 384930.6228 500828.9754 368392.7097 356007.2317 870780.7979 0.693979735 0.434027461 0.293376603 1.073495884 0.391342795 0.442052264 0.57514931 0.423060213 0.408836796 1 19.73195007 -10.59682077 4.031516262 1.011261079 0.524660815 0.313498196 0.210352196 293915410.4 321173.6613 30721279.43 0.050120157 2.53E-11 10.59682077 -0.486600264 TTAPTEGKS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 TTAPTEGKSPLK 12 1 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 TTAPT(0.001)EGKS(0.999)PLK;TTAPT(0.007)EGKS(0.993)PLK ; 146.3 8.76E-08 1187080000 1350320 1036380 360440 681060 589620 1487470 1730870 1390430 926510 2542600 TRUE FALSE FALSE 1255669.541 954253.4744 500012.0209 1585542.099 515664.3616 1303961.075 1297788.019 1073859.442 1006820.633 1905916.41 0.658827184 0.500679604 0.262347298 0.831905371 0.270559799 0.684164881 0.68092599 0.5634347 0.528260645 1 20.86205342 -14 0.253717339 3.78873322 0.512689752 0.3832641 0.170204856 190.6034343 1.886338962 276.0068983 0.230441084 1.00E-14 14 -3.276043468 TTAPTEGKS(ph)PLKK ddPTM_HeLa_A485_30min_R1 2 TTAPTEGKSPLKK 13 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 TTAPTEGKS(1)PLKK;TTAPTEGKS(1)PLKK ; 126.25 1.28E-05 2384800000 3325400 1483810 924320 7747300 2593500 2210580 4799700 3091000 2009810 10547900 TRUE FALSE FALSE 4065123.758 1657328.672 1266264.432 8170515.382 2335282.034 2326322.551 3774204.885 2332927.404 2413160.432 7918502.65 0.513370259 0.209298241 0.159912106 1.031825806 0.294914599 0.293783137 0.476631132 0.294617241 0.304749589 1 22.91679622 -10.35981249 3.306458923 1.004599114 0.397008488 0.370651042 0.235456364 158201910.9 220720702.2 7049769.98 0.060353815 4.37E-11 10.35981249 -0.607590627 TTAPTEGKS(ph)PLKK ddPTM_HeLa_A486_30min_R1 2 TTAPTEGKSPLKK 13 2 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 TTAPTEGKS(1)PLKK;TTAPTEGKS(1)PLKK ; 112.91 0.00018323 1881160000 1404700 1139190 295330 916310 756610 1704700 2233200 1865890 944230 2762300 TRUE FALSE FALSE 1306237.784 1048916.436 409689.6852 2133215.988 661708.9187 1494391.446 1674429.74 1441067.579 1026076.617 2070602.1 0.630849251 0.506575568 0.197860171 1.030239459 0.31957319 0.721718309 0.808668039 0.695965477 0.495545048 1 20.98161891 -13.99999991 0.11485942 2.251632368 0.397158104 0.228258767 0.225183558 237.9083511 1.792208378 69.9560156 2.427874627 1.00E-14 13.99999991 -1.854474264 TTAPTEGKS(ph)PLKKEDR ddPTM_HeLa_A485_30min_R1 4 TTAPTEGKSPLKKEDR 16 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 TTAPTEGKS(0.999)PLKKEDR;TTAPTEGKS(1)PLKKEDR;TTAPTEGKS(1)PLKKEDR;TTAPT(0.002)EGKS(0.998)PLKKEDR ;;; 125.28 0.00013263 8488100000 4964520 2728070 1357430 10815300 5091900 4788810 11993700 10264200 3243910 15630300 TRUE FALSE FALSE 6068860.347 3047094.055 1859599.844 11406112.45 4584932.557 5039544.687 9431148.015 7746888.856 3894932.982 11733953.86 0.517205063 0.259681783 0.158480242 0.972060448 0.390740633 0.429483936 0.803748517 0.660211293 0.331936961 1 23.48418589 -14 0.0939175 2.480213242 0.151466478 0.290905856 0.23566153 265.019018 1.71256549 79.05558451 4.948882121 1.00E-14 14 -2.328746763 TTAPTEGKS(ph)PLKKEDR ddPTM_HeLa_A486_30min_R1 5 TTAPTEGKSPLKKEDR 16 3 A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37;A0A494C001 A0A499FJY3 RBM15 Putative RNA-binding protein 15 1 0 TTAPTEGKS(1)PLKKEDR;TTAPTEGKS(1)PLKKEDR;TTAPTEGKS(1)PLKKEDR;TTAPTEGKS(1)PLKKEDR;TTAPTEGKS(1)PLKKEDR ;;;; 132.59 2.08E-05 11721950000 7798790 5490190 1466890 7356560 4639730 9178530 15324900 13337600 4339600 18294700 TRUE FALSE FALSE 7252135.094 5055127.349 2034909.093 17126443.46 4057771.8 8046176.289 11490447.93 10300919.64 4715760.022 13713588.04 0.52882842 0.368621788 0.148386337 1.248866701 0.295894246 0.586730203 0.837887787 0.751146936 0.343874995 1 23.70910275 -14 0.062476153 2.392096636 3.60E-11 0.159235487 0.301343202 714.2126788 3.24159831 152.845759 23.65288049 1.00E-14 14 -2.392096636 TTAS(ph)PSVR ddPTM_HeLa_A485_30min_R1 1 TTASPSVR 8 0 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 T(0.002)T(0.013)AS(0.964)PS(0.022)VR 99.855 0.0022645 589190000 990990 1416600 1488500 918940 1557800 1087200 1109300 1010500 1512600 1437300 TRUE FALSE FALSE 1211432.307 1582259.047 2039158.092 969139.3653 1402699.962 1144124.111 872288.9929 762673.2906 1816164.946 1079007.562 1.122728283 1.466402186 1.88984597 0.898176621 1.299990855 1.060348557 0.808417868 0.706828495 1.683180925 1 20.04127354 -5.283462438 24.9917419 1.051933981 1.490333235 0.285104873 0.309859447 969.4571956 1100136.811 0.087266369 0.129551362 5.21E-06 5.283462438 0.438399254 TTAS(ph)PSVR ddPTM_HeLa_A486_30min_R1 2 TTASPSVR 8 0 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 T(0.058)T(0.022)AS(0.905)PS(0.015)VR;T(0.001)T(0.002)AS(0.967)PS(0.031)VR ; 117.53 0.00088697 1448850000 2980000 3699000 4651500 704450 3828300 3043300 2782400 2923600 3868500 2189880 TRUE FALSE FALSE 2771117.389 3405877.768 6452685.371 1639995.201 3348118.917 2667848.588 2086214.091 2257960.102 4203824.695 1641519.794 1.688141318 2.074831982 3.930921451 0.999071231 2.039645777 1.625230836 1.270904011 1.375530231 2.560934513 1 20.64660072 -5.311103554 24.99996958 1.580219305 2.515661852 0.304984431 0.697778521 467.5618204 235360.4635 0.194233203 0.288094959 4.89E-06 5.311103554 0.935442547 TTASPS(ph)VR ddPTM_HeLa_A485_30min_R1 1 TTASPSVR 8 0 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 T(0.002)T(0.006)AS(0.349)PS(0.643)VR 90.919 0.0038018 418300000 580070 866560 950050 668440 911460 745680 778890 772460 952740 946940 TRUE FALSE FALSE 709104.5703 967896.6539 1301513.03 704955.1846 820711.8421 784722.6518 612473.7886 583012.9738 1143946.179 710885.2851 0.997495074 1.36153705 1.830834112 0.991658147 1.154492658 1.103866782 0.86156487 0.820122439 1.60918534 1 19.43925725 TTCMSSQGS(ph)DDEQIKR ddPTM_HeLa_A485_30min_R1 2 TTCMSSQGSDDEQIKR 16 1 E7EW69;E7EX04;B5ME97;Q9P0V9;Q9P0V9-2;C9JEW2;C9JNR7 E7EW69 10-Sep Septin-10 1 0 TTCMSSQGS(1)DDEQIKR;TTCMS(0.007)S(0.042)QGS(0.951)DDEQIKR ; 194.92 9.07E-19 1382500000 246220 203080 159632 455090 323650 313560 498450 441650 233380 652240 TRUE FALSE FALSE 300990.7896 226828.4394 218686.5196 479950.4144 291426.2696 329977.5167 391952.0855 333334.645 280217.2253 489648.5716 0.614707786 0.463247424 0.446619335 0.980193637 0.595174349 0.67390683 0.800476318 0.68076303 0.57228233 1 18.90138715 -14 0.087384065 2.001412899 0.377940433 0.344212077 0.147443508 272.3001748 1.658713476 52.76541351 3.978515661 1.00E-14 14 -1.623472466 TTCMSSQGS(ph)DDEQIKR ddPTM_HeLa_A486_30min_R1 1 TTCMSSQGSDDEQIKR 16 1 E7EW69;E7EX04;B5ME97;Q9P0V9;Q9P0V9-2;C9JEW2;C9JNR7 E7EW69 10-Sep Septin-10 1 0 TTCMSS(0.001)QGS(0.999)DDEQIKR 215.98 7.18E-34 851780000 325660 317460 154790 193920 304340 391930 508450 434900 272590 621530 TRUE FALSE FALSE 302832.9157 292303.3134 214728.8334 451455.5602 266166.8393 343577.6615 381230.4322 335882.7638 296218.3207 465894.8425 0.650002722 0.627401909 0.460895494 0.969007422 0.571302395 0.737457534 0.818275708 0.720941151 0.635805108 1 18.82964483 -14 0.142367104 2.032558923 0.587095737 0.348250853 0.13021721 158.1093974 1.367533665 46.64840103 0.755939222 1.00E-14 14 -1.445463186 TTEEQVQAST(ph)PCPR ddPTM_HeLa_A485_30min_R1 2 TTEEQVQASTPCPR 14 0 Q14137 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 0 TTEEQVQAS(0.001)T(0.999)PCPR;TTEEQVQAS(0.018)T(0.982)PCPR ; 228.9 5.39E-31 0 514580 520340 542230 441730 800930 483810 607460 598640 439560 629760 TRUE FALSE FALSE 629046.5457 581189.2366 742823.4411 465860.5914 721186.597 509141.5435 477671.2085 451822.6014 527775.6601 472772.4219 1.330548307 1.22932136 1.571207217 0.985380216 1.52544134 1.076927333 1.010361828 0.955687304 1.116341892 1 18.85078636 -6.439916844 7.538740134 1.020505265 1.31699776 0.480231766 0.154881126 0.245743619 19.7976108 0.051384003 0.045143393 3.63E-07 6.439916844 0.296492495 TTEEQVQAST(ph)PCPR ddPTM_HeLa_A486_30min_R1 2 TTEEQVQASTPCPR 14 0 Q14137 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 0 TTEEQVQAS(0.041)T(0.959)PCPR;TTEEQVQAS(0.003)T(0.997)PCPR ; 144.15 2.13E-05 384740000 534870 618700 533880 208792 751010 621750 648670 677100 516490 596010 TRUE FALSE FALSE 497378.3751 569671.9587 740612.6338 486078.3278 656811.3229 545044.8065 486365.9051 522939.111 561259.7691 446765.2166 1.113288046 1.275103651 1.657722236 1.087995013 1.470148746 1.219980397 1.088638701 1.170500951 1.256274545 1 18.76915734 -6.51605275 21.84249771 1.144668612 1.326186172 0.229119626 0.165076649 95.64825142 306075.6318 0.060174253 0.048640775 3.05E-07 6.51605275 0.18151756 TTEINRLPSANQGS(ph)PFK ddPTM_HeLa_A485_30min_R1 1 TTEINRLPSANQGSPFK 17 1 E5RFE4;Q56NI9;E5RFP7;E5RIE3 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 TTEINRLPSANQGS(1)PFK 183.75 5.85E-18 523120000 352190 389060 256460 480730 470640 406240 654100 652850 281950 630540 TRUE FALSE FALSE 430533.4505 434557.1826 351335.2262 506991.0626 423781.4291 427510.0982 514346.1915 492737.5139 338534.7788 473357.9822 0.909530348 0.918030748 0.742218869 1.071052104 0.895266257 0.903143317 1.086590299 1.04094054 0.715177078 1 18.85257212 -5.265133853 24.99641 0.960935379 0.862737069 0.150036991 0.11120381 638.5292916 4320222.147 0.030885949 0.047839048 5.43E-06 5.265133853 -0.09819831 TTEINRLPSANQGS(ph)PFK ddPTM_HeLa_A486_30min_R1 2 TTEINRLPSANQGSPFK 17 1 E5RFE4;Q56NI9;E5RFP7;E5RIE3 E5RFE4 ESCO2 N-acetyltransferase ESCO2 1 0 TTEINRLPSANQGS(1)PFK;TTEINRLPS(0.001)ANQGS(0.999)PFK ; 195.13 8.01E-19 1370450000 1634810 1341430 676440 822410 1360600 1392970 2166830 1961770 1088960 2603200 TRUE FALSE FALSE 1520218.261 1235130.201 938375.6837 1914612.042 1189940.861 1221119.524 1624666.216 1515117.796 1183351.93 1951341.776 0.779063043 0.632964567 0.480887405 0.981177191 0.609806481 0.625784544 0.832589265 0.776449218 0.606429865 1 20.89603506 -14 0.311974419 3.648856801 0.689997397 0.294483123 0.136234141 387.5636183 3.506649475 675.374235 0.127115406 1.00E-14 14 -2.958859404 TTGIVMDSGDGVTHTVPIYEGYALPHAILR ddPTM_HeLa_A485_30min_R1 6 TTGIVMDSGDGVTHTVPIYEGYALPHAILR 30 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;; ;;;;; 346.89 2.60E-143 3322180000 561286 628358 632680 616564 971092 657744 1055855 967707 652897 964297 FALSE FALSE TRUE 686142.1343 701839.0021 866734.66 650245.3301 874406.6708 692182.4588 830262.9537 730375.3409 783927.4392 723915.5045 0.947820747 0.969504034 1.197287052 0.898233739 1.207884988 0.956164711 1.146905887 1.008923467 1.082899087 1 19.46546179 -4.553198841 24.99931248 1.062660049 0.953241191 0.159022672 0.095886519 274.5040774 226331.3418 0.021867818 0.057858263 2.80E-05 4.553198841 -0.109418858 TTGIVMDSGDGVTHTVPIYEGYALPHAILR ddPTM_HeLa_A486_30min_R1 8 TTGIVMDSGDGVTHTVPIYEGYALPHAILR 30 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;;; ;;;;;;; 345.69 2.84E-143 4275345000 1008160 1213025 1117703 357165.9 1737257 1484265 1718380 1545788 1304111 1314139 FALSE FALSE TRUE 937493.1901 1116900.481 1550507.535 831500.2654 1519354.028 1301151.475 1288423.149 1193845.817 1417152.391 985070.0408 0.951702063 1.133828494 1.574007401 0.844102684 1.542381724 1.320872041 1.307950801 1.211940032 1.438631095 1 19.90986678 -4.525036788 24.99912128 1.288491358 0.997233569 0.184816789 0.214147292 84.71815752 981403.3043 0.050645623 0.135942026 2.99E-05 4.525036788 -0.291257789 TTGQVVAMK(ac)K ddPTM_HeLa_A485_30min_R1 4 TTGQVVAMKK 10 1 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 0 1 ;;; TTGQVVAMK(1)K;TTGQVVAMK(1)K;TTGQVVAMK(1)K;TTGQVVAMK(1)K 215.93 2.13E-19 270472000 345409 291513 293593 538540 567545 319514 533435 468417 388797 892074 FALSE TRUE FALSE 422244.0404 325602.9095 402205.2681 567959.0765 511038.227 336243.259 419462.2545 353536.9963 466824.9916 669696.3692 0.630500716 0.486194826 0.600578541 0.848084449 0.76308944 0.502083145 0.626346914 0.527906395 0.697069617 1 19.35314762 -8.028099545 22.22994504 1.000000004 0.62517831 0.528888047 0.106429377 596.8544289 472180.5666 0.111178222 0.028706094 9.37E-09 8.028099545 -0.374821694 TTGQVVAMK(ac)K ddPTM_HeLa_A486_30min_R1 4 TTGQVVAMKK 10 1 E5RIU6;A0A087WZZ9;P06493;A0A024QZP7;P06493-2 E5RIU6 CDK1;CDC2 Cyclin-dependent kinase 1 0 1 ;;; TTGQVVAMK(1)K;TTGQVVAMK(1)K;TTGQVVAMK(1)K;TTGQVVAMK(1)K 236.16 2.24E-26 309509000 599735 709000 414348 293847 739126 791891 925730 909108 682959 943867 FALSE TRUE FALSE 557696.6735 652816.2579 574794.6422 684090.6662 646417.925 694195.5398 694102.5626 702123.9541 742158.436 707516.5597 0.7882454 0.922686895 0.812411575 0.966889972 0.913643527 0.981172144 0.981040731 0.992378121 1.048962637 1 19.43240439 -5.220111436 0.445256075 1.02384942 0.769670165 0.727902053 0.041276741 1.174589794 0.331167532 0.032469289 0.146028817 6.02E-06 5.220111436 -0.254179255 TTGT(ph)PPDSSLVTYELHSRPEQDK ddPTM_HeLa_A485_30min_R1 1 TTGTPPDSSLVTYELHSRPEQDK 23 1 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.137)T(0.137)GT(0.726)PPDSSLVTYELHSRPEQDK 131.42 2.59E-06 276840000 58234 44304 33650 85164 63506 45840 71561 59086 37435 114370 TRUE FALSE FALSE 71187.9524 49484.96741 46098.53529 89816.29367 57183.11966 48240.11152 56271.40775 44595.06586 44947.86113 85859.66382 0.829119859 0.57634709 0.536905611 1.046082522 0.666006797 0.561848362 0.655388168 0.519394834 0.52350381 1 16.3896929 -10.09692769 5.005140116 1.000009335 0.656051898 0.299098684 0.157430333 219318755.1 16.94830768 26254.08216 0.039251132 8.00E-11 10.09692769 -0.343957437 TTGT(ph)PPDSSLVTYELHSRPEQDK ddPTM_HeLa_A486_30min_R1 2 TTGTPPDSSLVTYELHSRPEQDK 23 1 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.153)T(0.153)GT(0.693)PPDSSLVTYELHSRPEQDK;T(0.027)T(0.027)GT(0.946)PPDS(0.001)SLVTYELHSRPEQDK ; 280.08 6.69E-75 848820000 795250 746360 368740 261850 579520 931990 1021670 920340 622460 1018010 TRUE FALSE FALSE 739507.0817 687215.7154 511526.0032 609600.0332 506831.1978 817010.5496 766037.3599 710798.6729 676415.334 763093.6699 0.969090835 0.900565347 0.670331865 0.798853479 0.664179534 1.070655651 1.003857574 0.931469754 0.886411932 1 19.54150063 -6.269386138 24.99063561 0.975782001 0.798822992 0.455981687 0.097112226 612.9506547 1927575.833 0.036090496 0.032398541 5.38E-07 6.269386138 -0.176959009 TTGT(ph)PPDSSLVTYELHSRPEQDKFSQAAK ddPTM_HeLa_A485_30min_R1 4 TTGTPPDSSLVTYELHSRPEQDKFSQAAK 29 2 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.041)T(0.041)GT(0.884)PPDS(0.033)S(0.001)LVTYELHSRPEQDKFSQAAK;T(0.052)T(0.04)GT(0.627)PPDS(0.139)S(0.139)LVT(0.002)YELHSRPEQDKFSQAAK;T(0.021)T(0.021)GT(0.786)PPDS(0.172)S(0.001)LVTYELHSRPEQDKFSQAAK;T(0.001)T(0.004)GT(0.995)PPDSSLVTYELHSRPEQDKFSQAAK ;;; 192.07 4.42E-21 6107070000 2152040 1938970 1284880 2738020 2857340 2402110 4153900 4355680 1890640 3960590 TRUE FALSE FALSE 2630753.874 2165715.675 1760210.58 2887591.1 2572853.197 2527880.765 3266385.331 3287442.651 2270074.106 2973287.802 0.884796242 0.728390865 0.59200814 0.971177798 0.865322622 0.850197133 1.098576911 1.105659078 0.76348953 1 21.50362769 -5.753119596 1.263601849 0.980269574 0.74607225 0.321299868 0.128073994 0.514460817 1.726681694 0.05245603 0.075994238 1.77E-06 5.753119596 -0.234197324 TTGT(ph)PPDSSLVTYELHSRPEQDKFSQAAK ddPTM_HeLa_A486_30min_R1 4 TTGTPPDSSLVTYELHSRPEQDKFSQAAK 29 2 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.054)T(0.054)GT(0.891)PPDSSLVTYELHSRPEQDKFSQAAK;T(0.005)T(0.005)GT(0.99)PPDSSLVTYELHSRPEQDKFSQAAK;T(0.005)T(0.016)GT(0.943)PPDS(0.016)S(0.016)LVT(0.003)YELHSRPEQDKFSQAAK;T(0.011)T(0.011)GT(0.977)PPDSSLVTYELHSRPEQDKFSQAAK ;;; 284.38 9.28E-78 6160360000 3618140 3086850 1377250 1376380 3191210 3816850 5030970 4615980 2448190 4617240 TRUE FALSE FALSE 3364527.07 2842236.764 1910558.084 3204282.198 2790938.685 3345965.854 3772168.094 3565022.12 2660401.08 3461053.051 0.972110806 0.821205778 0.552016411 0.92581135 0.806384255 0.966747925 1.089890284 1.030039721 0.768668102 1 21.72277962 -6.277556417 5.150078637 0.981627936 0.806612636 0.26393875 0.129020226 0.249901828 20.79610773 0.046497217 0.042663489 5.28E-07 6.277556417 -0.1750153 TTHLAGALS(ph)PGEAWPFESV ddPTM_HeLa_A485_30min_R1 5 TTHLAGALSPGEAWPFESV 19 0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 T(0.004)T(0.004)HLAGALS(0.993)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV ;;;; 197.47 2.05E-25 770436000 430975 587070 515573 484009 750210 479933 716155 715717 494045 671499 TRUE FALSE FALSE 526843.9019 655722.7297 706304.9075 510449.1861 675516.4583 505061.5498 563142.6338 540186.2835 593195.2999 504106.6573 1.045104036 1.300761893 1.401102122 1.01258172 1.340026854 1.001894227 1.117110091 1.071571414 1.176725781 1 18.94336948 -6.271031617 24.99210585 1.08066163 1.222954203 0.261293171 0.122773796 1002.773256 2612670.495 0.041940376 0.037455906 5.36E-07 6.271031617 0.142292572 TTHLAGALS(ph)PGEAWPFESV ddPTM_HeLa_A486_30min_R1 5 TTHLAGALSPGEAWPFESV 19 0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 T(0.002)T(0.002)HLAGALS(0.996)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV ;;;; 180.74 4.88E-18 800054000 538103 537276 395582 189543.4 565160 494702 594209 604392 476412 597131 TRUE FALSE FALSE 500384.7585 494700.293 548761.9445 441266.6142 494272.3629 433670.697 445531.6233 466785.1354 517707.7757 447605.5109 1.117914651 1.105214929 1.225994611 0.985838207 1.104258886 0.968868091 0.995366707 1.042849393 1.156616179 1 18.77186827 -5.271339486 24.99460921 1.036363978 1.145258753 0.414518193 0.061719956 684.7803646 1728852.386 0.017403126 0.026178463 5.35E-06 5.271339486 0.108894775 TTHLAGALS(ph)PGGGQSAPAFPESGPSLR ddPTM_HeLa_A485_30min_R1 1 TTHLAGALSPGGGQSAPAFPESGPSLR 27 0 A0A2R8Y4Z8 A0A2R8Y4Z8 1 0 TTHLAGALS(1)PGGGQSAPAFPESGPSLR 185.77 2.12E-20 204810000 75877 98926 80175 87766 130120 78282 142720 115470 80406 126960 TRUE FALSE FALSE 92755.57688 110494.5352 109835.0689 92560.43434 117164.7959 82380.72447 112226.7061 87150.80145 96542.74667 95311.20853 0.973186452 1.159302635 1.15238355 0.971139027 1.229286647 0.864334067 1.177476478 0.914381454 1.012921231 1 16.54035826 -6.260387647 24.99992748 0.999949857 1.096595557 0.189683344 0.106309981 174.0569492 4137435.699 0.034101204 0.032260148 5.49E-07 6.260387647 0.096645701 TTHLAGALS(ph)PGGGQSAPAFPESGPSLR ddPTM_HeLa_A486_30min_R1 2 TTHLAGALSPGGGQSAPAFPESGPSLR 27 0 A0A2R8Y4Z8 A0A2R8Y4Z8 1 0 TTHLAGALS(1)PGGGQSAPAFPESGPSLR;TTHLAGALS(1)PGGGQSAPAFPESGPSLR ; 176.22 1.18E-14 501730000 269170 279620 210344 78826 303220 274700 324460 333270 253540 329960 TRUE FALSE FALSE 250302.573 257461.8928 291794.83 183510.9116 265187.3202 240810.3069 243276.6762 257391.6962 275517.0513 247335.8683 1.01199464 1.04094038 1.179751372 0.741950259 1.072174942 0.973616599 0.98358834 1.040656569 1.113938925 1 17.91611195 -7.464142543 5.755895192 1.06344854 1.001226651 0.0464095 0.106532029 0.66311749 46.45044295 0.060653985 0.027621697 3.43E-08 7.464142543 -0.062221889 TTHS(ph)PYEER ddPTM_HeLa_A485_30min_R1 3 TTHSPYEER 9 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TTHS(1)PYEER;TTHS(1)PYEER;TTHS(1)PYEER ;; 161.99 9.21E-06 4219670000 1265415 1453470 1425770 1364380 1841350 1457760 1836170 1909800 1377380 1636680 TRUE FALSE FALSE 1546902.201 1623440.673 1953221.654 1438912.625 1658018.729 1534086.059 1443857.279 1441418.556 1653807.532 1228685.797 1.258989243 1.3212822 1.589683595 1.171098932 1.349424509 1.248558471 1.175123276 1.173138453 1.34599711 1 20.2286846 -14 0.105226575 0.031685453 1.479365667 0.399433771 0.114451296 175.090013 1.236709116 36.52167655 1.660640234 1.00E-14 14 1.447680214 TTHS(ph)PYEER ddPTM_HeLa_A486_30min_R1 5 TTHSPYEER 9 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TT(0.001)HS(0.999)PYEER;TTHS(1)PYEER;TTHS(1)PYEER;TTHS(1)PYEER;T(0.055)T(0.055)HS(0.888)PY(0.002)EER ;;;; 194.49 6.40E-09 5289179000 2078296 2139672 1687979 833388 2431991 2106285 2262890 2366336 1820350 2356691 TRUE FALSE FALSE 1932618.183 1970116.598 2341609.674 1940169.381 2126948.011 1846432.972 1696690.988 1827572.95 1978139.404 1766560.234 1.094000728 1.115227525 1.325519294 1.098275249 1.204005372 1.045213708 0.960448987 1.03453758 1.11976901 1 20.75251151 -6.324522455 6.12186315 1.028485348 1.169332959 0.462806746 0.072962231 0.213360609 16.06310007 0.026216165 0.023159256 4.74E-07 6.324522455 0.140847611 TTIFS(ph)PEGR ddPTM_HeLa_A485_30min_R1 2 TTIFSPEGR 9 0 H0YLC2;H0YMI6;H0YMA1;H0YMZ1;H0YL69;P25789;H0YLS6 H0YLC2 PSMA4 Proteasome subunit alpha type;Proteasome subunit alpha type-4 1 0 TTIFS(1)PEGR;TTIFS(1)PEGR ; 141.89 0.00012922 188160000 297220 306930 317540 301820 488860 325350 407060 441470 284480 457380 TRUE FALSE FALSE 363335.5636 342822.7936 435011.2599 318307.6624 440187.3819 342384.8229 320088.3056 333198.7903 341572.5266 343363.5835 1.058165691 0.998425023 1.266911463 0.927028018 1.281986218 0.997149492 0.932213901 0.970396415 0.994783789 1 18.38937751 -6.498225523 24.60673705 0.970852972 1.10345248 0.27955704 0.102818192 785.9189036 784438.6675 0.034232148 0.030038772 3.18E-07 6.498225523 0.132599508 TTIFS(ph)PEGR ddPTM_HeLa_A486_30min_R1 2 TTIFSPEGR 9 0 H0YLC2;H0YMI6;H0YMA1;H0YMZ1;H0YL69;P25789;H0YLS6 H0YLC2 PSMA4 Proteasome subunit alpha type;Proteasome subunit alpha type-4 1 0 TTIFS(1)PEGR;TTIFS(1)PEGR ; 157.38 3.95E-06 347230000 305421 342488 304106 104338 387940 329348 380785 359699 280785 336720 TRUE FALSE FALSE 284012.5651 315348.0036 421863.9874 242904.137 339280.9478 288716.3923 285508.5655 277803.3899 305123.6699 252403.1203 1.12523397 1.24938235 1.671389747 0.962365824 1.344202668 1.143870139 1.131160998 1.100633738 1.208874397 1 17.94537022 -6.187762219 0.967790273 1.107756575 1.300026549 0.157235389 0.175375288 1.057331918 2.118718093 0.098826831 0.097234728 6.49E-07 6.187762219 0.192269974 TTIPEEEEEEEEAAGVVVEEELFHQQGT(ph)PR ddPTM_HeLa_A485_30min_R1 8 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 1 0 TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR ;;;;;;; 273.71 3.86E-77 6848739000 173073 203691.4 219955.6 211240 289113.2 204079.2 244634.7 333658.1 222820.7 259777.8 TRUE FALSE FALSE 211572.4918 227511.3374 301326.3296 222779.5063 260328.0747 214764.4713 192366.4979 251827.9278 267538.7707 195019.9753 1.084876005 1.166605303 1.545104952 1.142341988 1.334879026 1.101243455 0.986393817 1.291292994 1.371853166 1 17.57326238 -6.267805841 24.75838983 1.158127323 1.259748559 0.093393802 0.161634619 1282.182323 4986236.258 0.058185861 0.052490119 5.40E-07 6.267805841 0.101621235 TTIPEEEEEEEEAAGVVVEEELFHQQGT(ph)PR ddPTM_HeLa_A486_30min_R1 12 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 1 0 TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR ;;;;;;;;;;; 209.92 4.06E-29 7198325000 255102.1 272601.5 229516 127069.1 312519.5 287238.5 314503.4 322585 254644.6 308985.5 TRUE FALSE FALSE 237220.7601 250999.5643 318390.7419 295823.2865 273320.3902 251801.9343 235811.3228 249139.4375 276717.399 231613.5196 1.02420947 1.08369997 1.37466389 1.277228061 1.180070967 1.087164232 1.018124172 1.075668803 1.194737679 1 17.82135994 -6.24691422 4.405709338 1.075334462 1.198773454 0.232827851 0.10205028 0.332574174 16.61554243 0.038575993 0.036651364 5.66E-07 6.24691422 0.123438992 TTKPPYPGS(ph)PVK ddPTM_HeLa_A485_30min_R1 4 TTKPPYPGSPVK 12 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 TTKPPYPGS(1)PVK;TTKPPYPGS(1)PVK;T(0.001)T(0.001)KPPY(0.001)PGS(0.998)PVK;T(0.023)T(0.023)KPPY(0.17)PGS(0.785)PVK ;;; 136.34 6.56E-06 7552020000 10058850 5910180 4329220 17113050 10513510 8005260 13416390 9958720 7293720 22480200 TRUE FALSE FALSE 12296406.48 6601324.139 5930778.632 18047892.59 9466748.029 8424403.035 10549868.67 7516328.305 8757502.702 16876299.86 0.728619815 0.391159448 0.351426479 1.06942237 0.560949267 0.499185432 0.62512925 0.445377741 0.518923151 1 24.00849529 -10.18296305 4.49211353 1.00008171 0.573918495 0.297706867 0.195008498 196436198.2 32.03651831 184990.0593 0.049297853 6.56E-11 10.18296305 -0.426163214 TTKPPYPGS(ph)PVK ddPTM_HeLa_A486_30min_R1 4 TTKPPYPGSPVK 12 1 Q96T17-2;Q96T17;Q96T17-5;Q96T17-4 Q96T17-2 MAP7D2 MAP7 domain-containing protein 2 1 0 TTKPPYPGS(1)PVK;TTKPPYPGS(1)PVK;T(0.001)T(0.001)KPPY(0.001)PGS(0.997)PVK;TTKPPYPGS(1)PVK ;;; 153.75 3.98E-08 7084860000 6350870 5738750 2090030 2926390 3933100 7029510 8913030 7596530 4785040 9259160 TRUE FALSE FALSE 5905706.809 5283990.55 2899345.589 6812783.812 3439773.923 6162280.527 6682895.622 5866965.95 5199811.12 6940606.069 0.850892091 0.761315438 0.417736659 0.981583416 0.495601377 0.887859139 0.962869172 0.845310322 0.749186896 1 22.72663022 TTKS(ph)PSDSGYSYETIGK ddPTM_HeLa_A485_30min_R1 6 TTKSPSDSGYSYETIGK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.03)T(0.188)KS(0.769)PS(0.013)DSGYSYETIGK;T(0.07)T(0.388)KS(0.539)PS(0.003)DSGYSYETIGK;TTKS(0.455)PS(0.198)DS(0.198)GYS(0.149)YETIGK;T(0.027)T(0.005)KS(0.848)PS(0.12)DSGYSYETIGK;TTKS(0.996)PS(0.004)DSGYSYETIGK;T(0.003)T(0.018)KS(0.976)PS(0.002)DSGYSYETIGK ;;;;; 317.28 1.43E-79 23192660000 4487370 3530870 2123811 6346360 5711690 4702150 8558830 8926330 3516490 8585170 TRUE FALSE FALSE 5485569.975 3943774.532 2909497.068 6693045.577 5143014.089 4948347.303 6730166.051 6737133.572 4222217.288 6445045.117 0.851129802 0.611907979 0.451431606 1.038479243 0.797979532 0.767775433 1.04423878 1.045319846 0.655110587 1 22.61975903 -5.267963166 24.99944462 0.904250993 0.635531612 0.387664975 0.154792041 530.0186244 2031055.928 0.043627701 0.066489418 5.40E-06 5.267963166 -0.26871938 TTKS(ph)PSDSGYSYETIGK ddPTM_HeLa_A486_30min_R1 5 TTKSPSDSGYSYETIGK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TTKS(0.982)PS(0.018)DSGYSYETIGK;T(0.009)T(0.002)KS(0.987)PS(0.002)DSGYSYETIGK;T(0.002)T(0.008)KS(0.971)PS(0.019)DSGYSYETIGK;TTKS(0.908)PS(0.09)DS(0.001)GYS(0.001)YETIGK;TT(0.002)KS(0.97)PS(0.028)DSGYSYETIGK ;;;; 292.29 1.27E-68 15832200000 3835650 3322860 1526930 2089090 3492360 4141770 6050340 5587970 2629480 5158220 TRUE FALSE FALSE 3566790.742 3059544.472 2118198.189 4863507.097 3054315.644 3630800.528 4536480.938 4315711.216 2857405.444 3866568.138 0.922469388 0.791281665 0.547823836 1.257835611 0.789929347 0.939024064 1.173257725 1.116160653 0.739002997 1 21.88262221 -5.254928819 24.99947152 1.002666791 0.757600654 0.302653888 0.17269889 671.029098 2576633.981 0.046986114 0.078953208 5.56E-06 5.254928819 -0.245066137 TTKT(ph)PEDGDYS(ph)YEIIEK ddPTM_HeLa_A486_30min_R1 1 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 T(0.291)T(0.32)KT(0.389)PEDGDY(0.043)S(0.915)Y(0.043)EIIEK 52.321 0.037019 94733000 64678 58377 69305 28958 74514 54561 71675 68180 49442 49602 TRUE FALSE FALSE 60144.4062 53750.99391 96141.75205 67415.68746 65167.7593 47829.81856 53741.1569 52656.90236 53727.67237 37181.33635 1.617596679 1.445644487 2.585753001 1.813159345 1.752700836 1.286393208 1.445379919 1.416218661 1.445017249 1 15.182291 -6.131931668 3.310991463 1.351436512 1.880483136 0.429613876 0.302186156 0.275285486 5.63429417 0.108463887 0.109177184 7.38E-07 6.131931668 0.529046624 TTKT(ph)PEDGDYSYEIIEK ddPTM_HeLa_A485_30min_R1 4 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.029)T(0.029)KT(0.942)PEDGDYSYEIIEK;T(0.002)T(0.008)KT(0.99)PEDGDYSYEIIEK;T(0.004)T(0.022)KT(0.974)PEDGDYSYEIIEK;T(0.144)T(0.144)KT(0.713)PEDGDYSYEIIEK ;;; 292.31 3.10E-68 2482280000 724851 469035 288550 1172060 840664 674146 1155820 1165160 436975 1574790 TRUE FALSE FALSE 886091.6042 523884.5632 395296.6526 1236086.67 756964.5404 709443.2421 908869.6148 879402.6831 524671.8743 1182223.835 0.749512553 0.443134834 0.334367013 1.045560607 0.640288681 0.600092149 0.768779641 0.743854638 0.443800792 1 20.17307178 -11.44389008 2.250533105 4.555923934 0.643654426 0.235551367 0.193945415 22379772.39 1398844.826 407507215 0.050840954 3.60E-12 11.44389008 -3.912269508 TTKT(ph)PEDGDYSYEIIEK ddPTM_HeLa_A486_30min_R1 2 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.002)T(0.01)KT(0.988)PEDGDYSYEIIEK;T(0.004)T(0.004)KT(0.991)PEDGDYSYEIIEK ; 234.64 4.12E-42 1183740000 837620 657030 269810 584040 628070 922140 1247100 1188320 602510 1467510 TRUE FALSE FALSE 778907.1635 604964.5499 374287.6578 1359674.636 549291.6041 808375.7424 935062.3895 917765.4768 654736.0519 1100035.944 0.708074284 0.549949802 0.340250389 1.236027462 0.499339687 0.734863026 0.850028942 0.83430499 0.595195144 1 20.06911923 -13.99992519 0.042626558 2.26277105 5.95E-08 0.14204021 0.228811505 1474.615051 4.673460045 231.9868238 64.40498011 1.00E-14 13.99992519 -2.26277099 TTLCYMKR ddPTM_HeLa_A486_30min_R1 1 TTLCYMKR 8 1 J3QLL6 J3QLL6 KCTD1 0 0 69.998 0.022793 198040000 98279 91156 97025 33064 108250 89747 100270 99969 77753 99914 FALSE FALSE TRUE 91390.14961 83932.46658 134595.6784 76974.66296 94672.27561 78674.92762 75181.38545 77208.24101 84492.69264 74894.88407 1.220245558 1.120670225 1.797127802 1.027769305 1.264068658 1.050471319 1.00382538 1.03088805 1.12815039 1 16.19257955 -5.850675151 1.620307786 1.046058413 1.336587046 0.296141108 0.191112013 0.47779429 2.594687333 0.071055347 0.088872 1.41E-06 5.850675151 0.290528633 TTNESLLTS(ph)FPK ddPTM_HeLa_A485_30min_R1 1 TTNESLLTSFPK 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 TTNESLLT(0.009)S(0.991)FPK 104.55 0.00059246 28768000 143190 126920 87481 214020 187150 136710 246860 219130 102790 290920 TRUE FALSE FALSE 175042.1215 141762.1899 119843.8623 225711.3707 168516.6889 143867.9242 194116.3443 165388.0239 123419.0102 218398.998 0.801478592 0.649097254 0.548738151 1.033481714 0.771600101 0.658738939 0.888815178 0.757274646 0.565107951 1 17.73660671 -11.18763814 2.343040169 1.701894651 0.745021872 0.234832744 0.139811337 14963250.69 2890245.322 55800926.05 0.036805718 6.49E-12 11.18763814 -0.95687278 TTNNEKS(ph)PIIKPLIPK ddPTM_HeLa_A486_30min_R1 2 TTNNEKSPIIKPLIPK 16 2 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 T(0.002)T(0.011)NNEKS(0.987)PIIKPLIPK;T(0.044)T(0.23)NNEKS(0.727)PIIKPLIPK ; 105.67 0.000115 514640000 966290 884110 264960 575830 604490 1367940 1526950 1350860 769750 1691580 TRUE FALSE FALSE 898558.0609 814049.9037 367559.6079 1340561.341 528669.2276 1199177.471 1144890.96 1043298.667 836472.5498 1267997.358 0.708643481 0.64199653 0.289874112 1.057227235 0.416932436 0.945725528 0.902912733 0.822792461 0.659680042 1 20.27412031 -5.999936594 1.173925394 0.849360104 0.603218813 0.188072561 0.214705718 0.818835827 2.374272625 0.095840388 0.110287175 1.00E-06 5.999936594 -0.246141291 TTNVLGAVNKPLSS(ph)AGK ddPTM_HeLa_A486_30min_R1 2 TTNVLGAVNKPLSSAGK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 TTNVLGAVNKPLS(0.094)S(0.906)AGK;T(0.001)T(0.001)NVLGAVNKPLS(0.253)S(0.746)AGK ; 82.635 0.0012197 1171760000 1378110 1078910 556390 686030 1160150 1389660 1835780 1719380 804040 1926510 TRUE FALSE FALSE 1281511.606 993413.2423 771839.1086 1597112.51 1014633.169 1218217.878 1376448.427 1327914.708 873734.8346 1444099.357 0.887412351 0.687911976 0.534477843 1.105957497 0.702606205 0.843583146 0.953153549 0.919545253 0.605037895 1 20.46173857 -5.245283579 24.96747615 0.867022467 0.701731883 0.202488792 0.156144291 1359.556054 2101080.566 0.041337613 0.07131148 5.68E-06 5.245283579 -0.165290585 TTPATGEQS(ph)PGAR ddPTM_HeLa_A485_30min_R1 3 TTPATGEQSPGAR 13 0 O00308-4;O00308-2;O00308 O00308-4 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 1 0 TTPATGEQS(1)PGAR;TTPAT(0.001)GEQS(0.999)PGAR;TTPATGEQS(1)PGAR ;; 219.01 2.64E-27 3398040000 423625 538700 483410 480590 637690 475280 667790 637990 464020 661840 TRUE FALSE FALSE 517858.9198 601696.2789 662243.4754 506843.4148 574199.3445 500164.9259 525111.2112 481521.9522 557144.5578 496855.4683 1.042272759 1.211008668 1.332869451 1.020102318 1.155666751 1.006660805 1.056869139 0.96913888 1.121341302 1 18.92246672 TTPATGEQS(ph)PGAR ddPTM_HeLa_A486_30min_R1 2 TTPATGEQSPGAR 13 0 O00308-4;O00308-2;O00308 O00308-4 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 1 0 TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR ; 249.97 1.25E-35 2177740000 1246300 1204160 1029480 546204 1335660 1208610 1551890 1453180 1117480 1432570 TRUE FALSE FALSE 1158940.806 1108737.976 1428122.226 1271590.516 1168129.068 1059503.986 1163590.708 1122322.637 1214344.066 1073845.148 1.079243882 1.032493352 1.329914494 1.184147005 1.087800295 0.986645038 1.083574024 1.045143836 1.130837224 1 20.03435454 -5.92004059 5.139103266 1.052481361 1.159143591 0.276575243 0.081579465 0.298478194 13.85749104 0.027087294 0.03080042 1.20E-06 5.92004059 0.10666223 TTPDVIFVFGFR ddPTM_HeLa_A485_30min_R1 2 TTPDVIFVFGFR 12 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4;A0A2R8Y8A0 E7ETK0 RPS24 40S ribosomal protein S24 0 0 ; ; 205.83 4.13E-14 146459000 51558 58134 48648 54312 74079 44930 70543 75231 41714 79491 FALSE FALSE TRUE 63026.89923 64932.2656 66644.91961 57278.92703 66703.43465 47282.46533 55470.91177 56780.47929 50085.61718 59675.35662 1.056162925 1.08809179 1.116791309 0.959842224 1.117771865 0.792328157 0.929544705 0.951489568 0.839301514 1 15.86484766 -6.248948452 24.99926351 0.901189128 1.065594762 0.597699903 0.067750111 534.0429373 1068830.664 0.021619982 0.021477043 5.64E-07 6.248948452 0.164405634 TTPDVIFVFGFR ddPTM_HeLa_A486_30min_R1 2 TTPDVIFVFGFR 12 0 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847-2;P62847-3;P62847;P62847-4;A0A2R8Y8A0 E7ETK0 RPS24 40S ribosomal protein S24 0 0 ; ; 301.78 6.19E-63 138437000 100757 92287 80325 51199 118266 96926 123805 116030 90430 111486 FALSE FALSE TRUE 93694.45461 84973.84202 111428.9912 119193.8595 103431.9755 84968.25559 92827.67952 89612.50192 98268.54521 83569.17995 1.121160393 1.016808374 1.333374233 1.426289686 1.237680872 1.016741527 1.110788446 1.0723152 1.175894573 1 16.35068336 -6.245346581 22.7125291 1.081895186 1.232356318 0.310364194 0.112864028 357.0008404 503851.2691 0.041418574 0.041244879 5.68E-07 6.245346581 0.150461132 TTPES(ph)PPYSSGSYDSIK ddPTM_HeLa_A485_30min_R1 1 TTPESPPYSSGSYDSIK 17 0 A0A087WTU5;A0A087X0N3;Q96MY1-2;Q96MY1 A0A087WTU5 NOL4L Nucleolar protein 4-like 1 0 TTPES(1)PPYSSGSYDSIK 229.92 1.19E-34 467350000 371910 390420 297560 485060 516680 400820 568170 492900 395190 677670 TRUE FALSE FALSE 454640.0964 436076.2228 407639.8265 511557.5996 465237.525 421806.3154 446775.838 372015.5022 474501.0081 508739.3406 0.893660191 0.85717024 0.801274433 1.005539691 0.914490954 0.829120695 0.878201866 0.731249724 0.932699656 1 18.95656714 -5.394298337 0.006650881 1.74071741 5.16E-07 0.060264533 0.078493095 48172.8627 76.60053053 9713.443422 10337.59935 4.03E-06 5.394298337 -1.740716894 TTPES(ph)PPYSSGSYDSIKTEVSGCPEDLTVGR ddPTM_HeLa_A486_30min_R1 1 TTPESPPYSSGSYDSIKTEVSGCPEDLTVGR 31 1 A0A087WTU5;A0A087X0N3;Q96MY1-2;Q96MY1 A0A087WTU5 NOL4L Nucleolar protein 4-like 1 0 T(0.188)T(0.126)PES(0.6)PPY(0.028)S(0.019)S(0.019)GS(0.019)Y(0.002)DSIKTEVSGCPEDLTVGR 97.446 0.00010458 49004000 13587 13341 7817.5 9168.4 21661 13740 20334 23713 8592.8 17691 TRUE FALSE FALSE 12634.62146 12283.81057 10844.64536 21344.49855 18944.0754 12044.8985 15246.21813 18314.06755 9337.630823 13261.05845 0.952761162 0.926306947 0.81778128 1.60956221 1.428549272 0.908290884 1.149698434 1.38104116 0.70413918 1 13.69490831 TTPESPPYS(ph)SGSYDSIK ddPTM_HeLa_A486_30min_R1 1 TTPESPPYSSGSYDSIK 17 0 A0A087WTU5;A0A087X0N3;Q96MY1-2;Q96MY1 A0A087WTU5 NOL4L Nucleolar protein 4-like 1 0 TTPES(0.028)PPY(0.147)S(0.783)S(0.037)GS(0.004)Y(0.001)DSIK 85.973 0.0011155 171600000 138370 131370 87856 51165 121730 145030 175180 164740 115560 172770 TRUE FALSE FALSE 128670.9775 120959.7628 121876.1961 119114.7057 106461.4883 127137.6732 131348.1111 127232.2982 125576.8338 129507.2675 0.993542525 0.933999807 0.941076115 0.919753062 0.822050302 0.981703001 1.014214211 0.982433656 0.969650864 1 16.98267353 -6.490847859 24.99496773 0.991231967 0.921492381 0.406181906 0.040952595 691.6096846 539691.3697 0.015047987 0.013259055 3.23E-07 6.490847859 -0.069739586 TTPPESAPQNGPS(ph)PMAALMSVADTLGTAHS(ph)PK ddPTM_HeLa_A486_30min_R1 1 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 T(0.001)T(0.001)PPES(0.014)APQNGPS(0.766)PMAALMS(0.148)VADT(0.105)LGT(0.054)AHS(0.911)PK 67.045 0.0022324 19665000 12430 12209 9703.7 8374.7 13159 17111 20992 23844 13951 26229 TRUE FALSE FALSE 11558.72119 11241.51438 13461.23251 19496.72483 11508.47552 15000.01879 15739.57957 18415.24171 15160.28391 19661.08768 0.587898359 0.571764623 0.684663673 0.991640196 0.58534277 0.762929246 0.800544702 0.936633924 0.771080632 1 14.26305552 -3.063889403 0.145094326 1.039511546 1.60E-12 0.480177027 0.112762216 36.67984968 0.619649575 0.540090338 7.347434049 0.000863198 3.063889403 -1.039511546 TTPPESAPQNGPSPMAALMSVADTLGTAHS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 TTPPESAPQNGPSPMAALMS(0.003)VADT(0.317)LGT(0.228)AHS(0.452)PK;TTPPESAPQNGPSPMAALMSVADT(0.001)LGT(0.025)AHS(0.974)PK ; 214.78 1.60E-30 866550000 116149 81180 71648 153777 127324 102724 185487 146700 85173 216600 TRUE FALSE FALSE 141985.9443 90673.29483 98153.57672 162177.4481 114647.1755 108102.4698 145856.1872 110721.595 102266.4398 162605.6062 0.873192183 0.557627113 0.603629721 0.997366892 0.705062871 0.664813916 0.896993594 0.680921141 0.62892321 1 17.31101747 -10.34130764 3.484747057 1.001347225 0.733294329 0.257824887 0.135239758 62405684.66 87843355.95 855018.0464 0.033720969 4.56E-11 10.34130764 -0.268052897 TTPPESAPQNGPSPMAALMSVADTLGTAHS(ph)PK ddPTM_HeLa_A486_30min_R1 2 TTPPESAPQNGPSPMAALMSVADTLGTAHSPK 32 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 TTPPESAPQNGPSPMAALMSVADT(0.002)LGT(0.097)AHS(0.9)PK;TTPPESAPQNGPSPMAALMSVADTLGTAHS(0.999)PK ; 237.1 1.62E-50 806030000 263299 210213 109152 120287 194512 271008 385320 330636 200915 437110 TRUE FALSE FALSE 244843.0998 193554.9563 151418.5776 280034.215 170114.4912 237573.7884 288908.8605 255357.4005 218330.474 327654.8109 0.747259285 0.59072826 0.462128351 0.854662302 0.519188138 0.725073402 0.881747653 0.779348851 0.666342952 1 18.32181719 -6.521082885 11.20506813 0.81209595 0.633667904 0.334496073 0.129843196 0.13320179 529.5729946 0.0469062 0.037825715 3.01E-07 6.521082885 -0.178428046 TTPPPGAQCEVPAS(ph)PQRPSRPGALPEQTRPLR ddPTM_HeLa_A485_30min_R1 4 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 D6R9H8;Q9H074 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 0 TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTRPLR;TTPPPGAQCEVPAS(0.998)PQRPS(0.001)RPGALPEQT(0.002)RPLR;TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTRPLR;TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTRPLR ;;; 225.51 3.85E-39 20427500000 137597 122925 144591 153516.9 194519 118164 171113 132139 132226 246807 TRUE FALSE FALSE 168204.9779 137300.0094 198081.2278 161903.1395 175152.0054 124350.8843 134553.3097 99731.70306 158762.5454 185282.557 0.907829537 0.741030411 1.069076501 0.873817493 0.94532377 0.671141884 0.726206027 0.538268171 0.856867197 1 17.49936754 -6.258193821 24.83606413 0.72762025 0.905286534 0.213723224 0.136509525 337.7776121 2584788.571 0.04407593 0.04233825 5.52E-07 6.258193821 0.177666284 TTPPPGAQCEVPAS(ph)PQRPSRPGALPEQTRPLR ddPTM_HeLa_A486_30min_R1 2 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 D6R9H8;Q9H074 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 0 TTPPPGAQCEVPAS(1)PQRPSRPGALPEQTRPLR;TTPPPGAQCEVPAS(0.976)PQRPS(0.022)RPGALPEQT(0.002)RPLR ; 193.13 1.91E-21 9492800000 255410 322340 271484 97525 286140 242640 259410 318490 279700 291930 TRUE FALSE FALSE 237507.0779 296796.6045 376609.8754 227043.1286 250249.6531 212705.5438 194502.8742 245976.7796 303944.6212 218828.8279 1.085355528 1.356295728 1.721024963 1.037537562 1.143586316 0.972017928 0.888835699 1.124060216 1.388960605 1 17.73944328 -5.332153743 24.99999718 1.074728631 1.384439855 0.355477361 0.190137684 170.4374344 60254.9202 0.055311634 0.082040423 4.65E-06 5.332153743 0.309711224 TTPPPGAQCEVPASPQRPSRPGALPEQT(ph)RPLR ddPTM_HeLa_A485_30min_R1 1 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 D6R9H8;Q9H074 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 0 TTPPPGAQCEVPAS(0.172)PQRPS(0.302)RPGALPEQT(0.526)RPLR 96.394 0.00024402 3484000000 80883 60470 80351 71038 105160 57740 68014 33286 64473 109660 TRUE FALSE FALSE 98875.14431 67541.44048 110076.1786 74918.62606 94689.90116 60763.17712 53482.25328 25122.55631 77412.13972 82323.78014 1.201052043 0.820436578 1.337112781 0.91004842 1.150213231 0.738099939 0.649657404 0.305167672 0.940337526 1 16.32902161 -6.351588798 4.612834034 0.670095042 1.073305855 0.379283498 0.223506998 0.215733644 7.934725393 0.0767977 0.0675089 4.45E-07 6.351588798 0.403210813 TTPPPGAQCEVPASPQRPSRPGALPEQT(ph)RPLR ddPTM_HeLa_A486_30min_R1 1 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 D6R9H8;Q9H074 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 0 TTPPPGAQCEVPAS(0.009)PQRPS(0.047)RPGALPEQT(0.944)RPLR 140.38 2.87E-07 3396700000 81909 93358 57887 68545 118180 97943 87998 131360 88733 117740 TRUE FALSE FALSE 76167.60208 85959.97208 80302.39667 159576.2241 103356.7624 85859.78847 65979.96965 101452.1956 96424.44788 88257.13764 0.863019175 0.9739719 0.909868582 1.808082931 1.171086727 0.972836767 0.747587917 1.149506978 1.09253994 1 16.42942534 -6.260999791 23.41133419 0.986531851 1.159445081 0.07536396 0.264704628 47.81351433 2546463.239 0.097166755 0.09152362 5.48E-07 6.260999791 0.17291323 TTPPTQKPPS(ph)PPMSGK ddPTM_HeLa_A485_30min_R1 4 TTPPTQKPPSPPMSGK 16 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;E9PEZ7;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 TTPPTQKPPS(1)PPMSGK;TTPPTQKPPS(1)PPMSGK;TTPPTQKPPS(0.997)PPMS(0.003)GK;TTPPTQKPPS(0.999)PPMS(0.001)GK ;;; 138.03 2.37E-06 4581550000 4024100 2528050 1617560 7449500 4211750 3544350 7194400 6200110 2700620 10758000 TRUE FALSE FALSE 4919247.162 2823683.456 2215962.756 7856447.322 3792413.382 3729926.685 5657257.667 4679523.301 3242609.662 8076228.586 0.609102022 0.349628967 0.274380886 0.972786646 0.469577271 0.461840158 0.700482609 0.579419373 0.401500481 1 22.94525031 -11.14992897 2.480772817 2.089887116 0.537184445 0.352821838 0.188751662 11400606.18 3402077.5 69764883.12 0.048243504 7.08E-12 11.14992897 -1.552702671 TTPPTQKPPS(ph)PPMSGK ddPTM_HeLa_A486_30min_R1 3 TTPPTQKPPSPPMSGK 16 1 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9;E9PEZ7;H7C3Q7 H0Y6B5;H7C3Q7 ABI2 Abl interactor 2 1 0 TTPPTQKPPS(1)PPMSGK;TTPPT(0.006)QKPPS(0.994)PPMSGK;TTPPTQKPPS(1)PPMSGK ;; 129.2 8.44E-06 4146990000 3116720 2552650 894720 2128870 2078160 3660180 5209800 4393500 2266770 6524200 TRUE FALSE FALSE 2898254.023 2350368.717 1241179.545 4956116.947 1817497.795 3208624.206 3906252.936 3393195.959 2463255.449 4890497.855 0.592629648 0.480599069 0.253794109 1.013417671 0.371638604 0.656093572 0.798743411 0.693834464 0.50368194 1 22.22154991 -13.99999999 0.111478653 2.250318784 0.380178458 0.275472652 0.202268466 220.0021351 1.622032706 63.11032501 2.407591438 1.00E-14 13.99999999 -1.870140326 TTPQQGASGPGRS(ph)PVGQAR ddPTM_HeLa_A485_30min_R1 2 TTPQQGASGPGRSPVGQAR 19 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR ; 176.88 1.15E-13 461030000 24132 28091 31683 23869 38897 29044 42550 44635 23282.8 37767 TRUE FALSE FALSE 29500.08015 31375.99809 43403.86014 25172.90303 35024.2781 30564.69893 33458.8449 33688.19627 27955.4444 28352.38195 1.04047978 1.106644166 1.530871735 0.88785849 1.235320481 1.078029316 1.180107017 1.188196333 0.985999852 1 14.79118232 -7.766211088 24.84823253 0.992999805 1.158711776 0.148948483 0.155678528 216.8210541 1129004.12 0.129045318 0.037587796 1.71E-08 7.766211088 0.165711971 TTPQQGASGPGRS(ph)PVGQAR ddPTM_HeLa_A486_30min_R1 4 TTPQQGASGPGRSPVGQAR 19 1 A0A2R8YFR7;A0A2R8YF49;Q12774;H0Y895 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR;TTPQQGASGPGRS(1)PVGQAR ;;; 160.42 1.34E-12 325022000 41865 36154.3 34903.5 20238.4 57693.3 43389.2 51924.3 56725.9 33757.5 50247.6 TRUE FALSE FALSE 38930.47969 33289.3016 48419.06995 47116.01799 50456.86835 38036.28165 38932.29094 43810.65089 36683.62728 37665.2739 1.033590776 0.883819448 1.285509567 1.250913988 1.33961241 1.009850127 1.033638864 1.163157634 0.973937622 1 15.2009474 TTPSYVAFTDTER ddPTM_HeLa_A485_30min_R1 2 TTPSYVAFTDTER 13 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;P54652;E9PPY6;E9PN25;E9PI65;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;P17066;P48741;Q53FA3;P34931 P11142;A0A0G2JIW1;P17066;Q53FA3 HSPA8;HSPA2;HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like 0 0 ; ; 240.37 2.28E-29 206398000 73317 82345 80788 76803 119803 83629 111207 106258 70464 112765 FALSE FALSE TRUE 89626.11371 91974.53144 110674.8431 80998.55341 107874.9927 88007.68512 87446.71597 80198.05889 84605.47847 84654.76079 1.058725025 1.086466143 1.307367029 0.956810375 1.274293279 1.039607038 1.032980486 0.947354386 0.999417843 1 16.36930358 -6.50575137 20.69164998 0.997085425 1.135776535 0.329970871 0.09633436 90.63832401 109502.0838 0.033073791 0.028362999 3.12E-07 6.50575137 0.13869111 TTPVDLCLLEES(ph)VGSLEGSR ddPTM_HeLa_A485_30min_R1 1 TTPVDLCLLEESVGSLEGSR 20 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 TTPVDLCLLEES(0.346)VGS(0.308)LEGS(0.346)R 81.144 0.0020325 29917000 17773 17101 19508 19701 30043 15482 21162 22905 17773 27564 TRUE FALSE FALSE 21726.54253 19100.81319 26724.821 20777.21574 27051.81343 16292.61358 16640.56582 17287.51284 21339.87808 20692.80208 1.049956524 0.923065572 1.291503243 1.004079373 1.307305474 0.787356566 0.8041717 0.83543605 1.031270584 1 14.3368414 -6.279448456 24.99785404 0.875894525 1.108132167 0.41232788 0.132634817 809.2597972 1123305.66 0.045959493 0.040613213 5.25E-07 6.279448456 0.232237642 TTPVDLCLLEESVGS(ph)LEGSR ddPTM_HeLa_A485_30min_R1 2 TTPVDLCLLEESVGSLEGSR 20 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 TTPVDLCLLEES(0.001)VGS(0.994)LEGS(0.005)R;TTPVDLCLLEES(0.004)VGS(0.869)LEGS(0.128)R ; 133.93 3.14E-07 38626000 30356 34367 30808 36574 46292 29610 39478 33896 29108 50936 TRUE FALSE FALSE 37108.58747 38385.9217 42205.16123 38571.94501 41683.00594 31160.33381 31043.20279 25582.95285 34949.70861 38238.59261 0.970448569 1.00385289 1.103732077 1.008717695 1.090076886 0.814892277 0.811829115 0.669034897 0.913990454 1 15.2227418 -6.269638992 24.72940641 0.8193815 1.035932613 0.53890285 0.088227822 365.766366 1103120.121 0.029742153 0.026676776 5.37E-07 6.269638992 0.216551112 TTQPSINES(ph)ESDPFEVVRDDFK ddPTM_HeLa_A486_30min_R1 1 TTQPSINESESDPFEVVRDDFK 22 1 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 1 0 T(0.004)T(0.004)QPS(0.073)INES(0.459)ES(0.459)DPFEVVRDDFK 53.262 0.01605 35967000 36340 28087 18394 16540 34120 31873 43621 45150 23813 41776 TRUE FALSE FALSE 33792.75366 25861.28383 25516.64941 38505.95589 29840.35144 27940.83332 32706.56442 34870.33062 25877.13001 31315.01768 1.079122931 0.825842862 0.814837458 1.229632257 0.952908657 0.892250281 1.044437041 1.113533799 0.826348887 1 14.93456707 TTQSMQDFPVVDS(ph)EEEAEEEFQK ddPTM_HeLa_A485_30min_R1 3 TTQSMQDFPVVDSEEEAEEEFQK 23 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK ;; 229.65 1.23E-38 376265000 595801 520721 401463 791430 675633 531388 841960 713740 493330 1095320 TRUE FALSE FALSE 728334.877 581614.7913 549980.87 834663.8169 608364.6062 559210.654 662068.3678 538694.1459 592336.8059 822276.8819 0.885753805 0.707322319 0.668851189 1.01506419 0.739853716 0.680075856 0.805164759 0.655125004 0.720361741 1 19.64926474 TTQSMQDFPVVDS(ph)EEEAEEEFQK ddPTM_HeLa_A486_30min_R1 3 TTQSMQDFPVVDSEEEAEEEFQK 23 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK ;; 271.13 8.54E-75 442950000 703140 675570 362692 290009 572160 744090 869650 857710 561860 975220 TRUE FALSE FALSE 653853.517 622035.3728 503136.0556 675155.6082 500394.3576 652291.7412 652054.3718 662428.1567 610562.4772 731018.5644 0.89444174 0.850915973 0.688267139 0.923582028 0.684516621 0.892305302 0.891980592 0.906171456 0.835221576 1 19.47954852 -6.479534352 24.87290277 0.899327149 0.80823786 0.259185944 0.081610104 644.7287336 369973.7137 0.027393961 0.024157531 3.31E-07 6.479534352 -0.091089289 TTRT(ph)PDTSTYCYETAEK ddPTM_HeLa_A485_30min_R1 1 TTRTPDTSTYCYETAEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.049)T(0.137)RT(0.814)PDTSTYCYETAEK 310.88 5.92E-79 1625100000 1160100 1336200 949570 1749700 2609600 1569000 2660200 3134000 1322400 2559500 TRUE FALSE FALSE 1418160.243 1492456.967 1300855.458 1845281.681 2349779.061 1651150.414 2091826.538 2365381.586 1587793.55 1921463.754 0.738062448 0.77672918 0.677012749 0.960352063 1.222910948 0.859319053 1.088663022 1.231031073 0.826345825 1 20.87377433 -5.395728825 4.609038939 1.046748821 0.737205876 0.541318733 0.126130382 0.165858289 5.471106891 0.034984223 0.052684846 4.02E-06 5.395728825 -0.309542945 TTRT(ph)PDTSTYCYETAEK ddPTM_HeLa_A486_30min_R1 3 TTRTPDTSTYCYETAEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.146)T(0.146)RT(0.706)PDT(0.001)STYCYETAEK;T(0.137)T(0.137)RT(0.725)PDTSTYCYETAEK;T(0.154)T(0.154)RT(0.692)PDTSTYCYETAEK ;; 192.63 4.66E-18 3846760000 1259510 1180910 833960 1095760 1715700 1607950 2311070 2432950 961980 1934130 TRUE FALSE FALSE 1171224.853 1087330.391 1156891.646 2550984.657 1500500.908 1409577.477 1732815.842 1879020.396 1045365.201 1449811.259 0.807846432 0.74998065 0.797960175 1.759528794 1.034962929 0.972248952 1.195200983 1.296044836 0.721035372 1 20.46743367 -5.049742122 24.99924929 1.153577441 0.777674925 0.288512008 0.25465897 423.5977944 212889.923 0.068157806 0.118055277 8.92E-06 5.049742122 -0.375902515 TTRT(ph)PEEGGYSYDISEK ddPTM_HeLa_A485_30min_R1 3 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TTRT(1)PEEGGYSYDISEK;T(0.045)T(0.004)RT(0.95)PEEGGYSYDISEK;T(0.012)T(0.012)RT(0.97)PEEGGYS(0.007)YDIS(0.001)EK ;; 276.8 4.34E-59 1881580000 923611 869217 696987 1143844 1452490 1071950 1642300 1859960 897008 1592030 TRUE FALSE FALSE 1129065.081 970864.367 954831.4953 1206329.301 1307874.996 1128075.644 1291409.189 1403801.894 1077029.278 1195166.22 0.944692932 0.812325809 0.798911046 1.009340191 1.09430385 0.943865067 1.080526848 1.17456624 0.901154383 1 20.18877985 -5.351739187 5.356890495 1.039705088 0.848681894 0.498010357 0.081340839 0.17000904 7.771404869 0.022755835 0.034237997 4.45E-06 5.351739187 -0.191023194 TTRT(ph)PEEGGYSYDISEK ddPTM_HeLa_A486_30min_R1 3 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.086)T(0.086)RT(0.827)PEEGGYSYDISEK;T(0.143)T(0.143)RT(0.714)PEEGGYSYDISEK;T(0.008)T(0.008)RT(0.946)PEEGGYS(0.038)YDISEK ;; 238.8 5.97E-42 2329420000 1237400 1142840 662370 613947 1383950 1359950 1854650 1877070 990915 1709130 TRUE FALSE FALSE 1150664.65 1052277.196 918857.4029 1429299.643 1210362.086 1192173.196 1390596.954 1449702.137 1076808.31 1281152.723 0.898147917 0.821351879 0.71721145 1.115635644 0.944744576 0.930547291 1.085426373 1.13156075 0.840499568 1 20.28901104 -5.259706997 24.99916886 1.009896733 0.813148562 0.476075439 0.093551161 133.674831 1928983.546 0.025798767 0.041861486 5.50E-06 5.259706997 -0.196748171 TTRT(ph)SDVGGYYYEK ddPTM_HeLa_A486_30min_R1 2 TTRTSDVGGYYYEK 14 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.14)T(0.14)RT(0.455)S(0.266)DVGGYYYEK;T(0.084)T(0.084)RT(0.416)S(0.416)DVGGYYYEK ; 135.49 1.27E-05 910890000 587600 540610 519240 387660 1070000 799690 1039570 1215470 529620 793690 TRUE FALSE FALSE 546412.2744 497770.0947 720303.6337 902492.0713 935790.6226 701032.3785 779458.5905 938734.0145 575527.888 594944.8579 0.918425073 0.836665933 1.210706546 1.51693398 1.572903119 1.178314879 1.310135856 1.577850455 0.967363412 1 19.18239643 -4.867916683 4.258543972 1.335554379 0.877784113 0.389314727 0.206697929 0.185712523 5.934687511 0.053268552 0.121051434 1.36E-05 4.867916683 -0.457770266 TTRTPEEGGY(ph)SYDISEK ddPTM_HeLa_A485_30min_R1 1 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.007)T(0.007)RT(0.157)PEEGGY(0.727)S(0.09)Y(0.012)DISEK 108.56 0.00016026 316790000 102360 106720 104180 158710 196770 150730 214620 255020 127930 224010 TRUE FALSE FALSE 125129.6289 119199.9757 142720.5173 167379.9254 177178.8879 158621.9897 168764.6837 192475.9451 153604.3776 168168.4296 0.744073243 0.708813039 0.848676042 0.995311224 1.053579963 0.943232865 1.003545577 1.14454268 0.913396039 1 17.35954737 -5.076672214 2.399117206 1.014642224 0.724941417 0.786410342 0.059567708 0.123684087 1.392521115 0.016872425 0.037550088 8.38E-06 5.076672214 -0.289700806 TTRTPEEGGYS(ph)YDISEK ddPTM_HeLa_A486_30min_R1 1 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.003)T(0.012)RT(0.055)PEEGGYS(0.929)YDISEK 149.97 6.73E-07 205670000 156260 137830 89597 82066 185650 175490 251420 255180 128880 220320 TRUE FALSE FALSE 145306.9809 126907.8488 124291.3579 191053.7954 162364.0459 153839.8281 188512.0568 197081.0845 140051.4222 165150.438 0.879846174 0.768437858 0.752594782 1.15684704 0.983128158 0.931513291 1.141456596 1.193342791 0.848023317 1 17.33342127 -5.25118918 24.95301894 1.042182268 0.797107414 0.513221627 0.10522072 541.7357103 1318795.532 0.028678452 0.048954265 5.61E-06 5.25118918 -0.245074854 TTRTPEEGGYSYDIS(ph)EK ddPTM_HeLa_A485_30min_R1 1 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TTRT(0.002)PEEGGYSYDIS(0.998)EK 241.99 2.74E-41 211720000 99925 96178 79572 130620 171640 118090 195050 223080 97689 181470 TRUE FALSE FALSE 122152.9715 107425.1805 109008.9941 137755.4399 154550.9189 124273.0098 153375.9741 168369.2802 117294.2862 136232.8687 0.89664831 0.788540838 0.80016662 1.011176239 1.134461312 0.912210181 1.125836779 1.235893231 0.860983751 1 17.0557153 -5.338826576 4.565920656 1.055075798 0.824390924 0.453844313 0.106216028 0.183600359 7.079894208 0.029854903 0.045712513 4.58E-06 5.338826576 -0.230684874 TTRTSDVGGY(ph)YYEK ddPTM_HeLa_A485_30min_R1 1 TTRTSDVGGYYYEK 14 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.062)T(0.062)RT(0.074)S(0.304)DVGGY(0.349)Y(0.112)Y(0.036)EK 65.179 0.015514 165360000 166530 216500 189460 229870 407700 295150 378650 490670 248360 404480 TRUE FALSE FALSE 203574.024 241817.7917 259549.1381 242427.216 367107.9565 310603.5976 297748.3342 370332.4132 298203.5739 303650.5799 0.670421983 0.796368615 0.854762531 0.798375607 1.208981575 1.022898088 0.980562376 1.219600546 0.982061599 1 18.2120526 -5.74044426 23.54297939 1.073268615 0.786493752 0.706888709 0.091116228 67.18751654 75340.20938 0.026391243 0.034023531 1.82E-06 5.74044426 -0.286774864 TTS(ph)FAESCKPVQQPSAFGSMK ddPTM_HeLa_A485_30min_R1 2 TTSFAESCKPVQQPSAFGSMK 21 1 A0A3B3ITW1;P49841;P49841-2 A0A3B3ITW1 GSK3B Glycogen synthase kinase-3 beta 1 0 T(0.014)T(0.362)S(0.624)FAESCKPVQQPSAFGSMK;TT(0.004)S(0.996)FAESCKPVQQPSAFGSMK ; 238.2 1.32E-46 5064300000 2021530 1371410 1055200 2517670 2192030 2089030 3722200 3477800 1715470 4087500 TRUE FALSE FALSE 2471212.374 1531784.47 1445562.391 2655203.937 1973783.797 2198408.381 2926921.562 2624864.097 2059749.094 3068561.475 0.805332529 0.499186502 0.471087968 0.86529273 0.643227718 0.716429636 0.953841592 0.855405413 0.671242571 1 21.54913106 -6.10959093 0.925183009 0.858849644 0.607233477 0.320564932 0.140589449 0.693460383 1.28728117 0.08048609 0.086726317 7.77E-07 6.10959093 -0.251616167 TTS(ph)FAESCKPVQQPSAFGSMK ddPTM_HeLa_A486_30min_R1 2 TTSFAESCKPVQQPSAFGSMK 21 1 A0A3B3ITW1;P49841;P49841-2 A0A3B3ITW1 GSK3B Glycogen synthase kinase-3 beta 1 0 TTS(1)FAESCKPVQQPSAFGSMK;T(0.03)T(0.03)S(0.94)FAESCKPVQQPSAFGSMK ; 323.31 6.89E-103 6777400000 4276700 3832700 1724170 1602370 3323290 4366800 5555800 5263200 2948090 5158400 TRUE FALSE FALSE 3976925.415 3528982.894 2391814.799 3730398.339 2906451.98 3828068.614 4165680.077 4064884.255 3203632.815 3866703.064 1.028505512 0.912659399 0.61856697 0.96474911 0.75166154 0.990008426 1.077320913 1.051253274 0.828517929 1 21.88267255 -6.363311477 8.499297629 0.998929272 0.85150264 0.228878895 0.122506267 0.477634333 36.2279406 0.043475223 0.038297908 4.33E-07 6.363311477 -0.147426631 TTS(ph)FFSR ddPTM_HeLa_A485_30min_R1 3 TTSFFSR 7 0 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 TT(0.017)S(0.983)FFSR;T(0.001)T(0.048)S(0.951)FFSR;T(0.014)T(0.044)S(0.942)FFSR ;; 150.36 0.00091279 339111000 619790 598310 608600 659760 889250 574770 795820 670720 555390 847840 TRUE FALSE FALSE 757660.1472 668277.1499 833746.466 695801.0182 800713.1477 604864.0684 625786.5557 506224.8684 666851.6787 636489.0913 1.190374128 1.049942818 1.309914777 1.093186085 1.258015508 0.950313331 0.983185045 0.795339426 1.047703233 1 19.27977626 -6.276274279 23.66741533 0.944259177 1.175407972 0.59628564 0.092292309 263.8439388 420931.5563 0.030727549 0.027231423 5.29E-07 6.276274279 0.231148795 TTS(ph)FFSR ddPTM_HeLa_A486_30min_R1 3 TTSFFSR 7 0 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 T(0.001)T(0.035)S(0.964)FFSR;T(0.002)T(0.011)S(0.987)FFSR;T(0.01)T(0.03)S(0.961)FFSR ;; 128.38 0.0017085 315360000 778130 992600 687710 382894 951030 1043430 1206780 1265040 857990 1006820 TRUE FALSE FALSE 723587.1053 913942.761 954009.7295 891396.5824 831742.9494 914702.2154 904830.88 977018.0076 932361.264 754705.7187 0.958767222 1.21099223 1.264081755 1.181118097 1.102075854 1.211998522 1.198918807 1.294568179 1.23539711 1 19.52555468 -6.328161473 24.991418 1.207258497 1.155960626 0.02164029 0.104212875 654.0575992 244980.812 0.036400815 0.032102512 4.70E-07 6.328161473 -0.051297871 TTS(ph)FKGTSPSSK ddPTM_HeLa_A486_30min_R1 1 TTSFKGTSPSSK 12 1 F8W8I7;F5H6V0;F5H497;F5GWA4;Q9H3F6-2;Q9H3F6 F8W8I7 KCTD10 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 1 0 T(0.005)T(0.144)S(0.851)FKGTSPSSK 85.469 0.00086549 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 TTS(ph)GDDACNLTSFRPATLTVTNFFK ddPTM_HeLa_A485_30min_R1 1 TTSGDDACNLTSFRPATLTVTNFFK 25 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0U1RQT6 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 T(0.002)T(0.002)S(0.995)GDDACNLTSFRPATLTVTNFFK 135.57 1.34E-06 525690000 101410 127500 122200 188830 183290 135900 251290 273400 176940 316750 TRUE FALSE FALSE 123968.3046 142410.0159 167406.8652 199145.3048 165041.004 143015.5139 197599.8386 206348.2213 212450.235 237790.0544 0.521335112 0.598889707 0.704011215 0.837483743 0.694061846 0.601436062 0.830984455 0.867774819 0.893436168 1 17.85932885 -3.904894117 0.124306625 1.134629269 2.90E-18 0.728314892 0.076134069 24.79311436 0.454858369 0.738700736 4.804399531 0.000124482 3.904894117 -1.134629269 TTS(ph)GDDACNLTSFRPATLTVTNFFK ddPTM_HeLa_A486_30min_R1 1 TTSGDDACNLTSFRPATLTVTNFFK 25 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0U1RQT6 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 T(0.001)T(0.022)S(0.977)GDDACNLTSFRPATLTVTNFFK 167.03 3.23E-14 705820000 144020 148470 80628 65172 141590 141520 187450 199080 127670 203030 TRUE FALSE FALSE 133924.9417 136704.6965 111849.3209 151723.7096 123830.4619 124060.7013 140548.0274 153753.8299 138736.5384 152189.9665 0.879985355 0.898250388 0.734932292 0.996936349 0.813657199 0.815170041 0.923503898 1.010275733 0.911601084 1 17.21551372 -6.972360957 5.717739586 0.970401964 0.85768789 0.378650164 0.068047212 0.184738468 17.80536031 0.02870739 0.018678468 1.07E-07 6.972360957 -0.112714074 TTS(ph)ISPALAR ddPTM_HeLa_A485_30min_R1 1 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 T(0.023)T(0.101)S(0.615)IS(0.26)PALAR 64.374 0.021535 908180000 131900 122020 126910 197720 188770 146200 232460 217880 161850 264940 TRUE FALSE FALSE 161240.7 136289.1776 173859.2902 208520.9429 169975.396 153854.8059 182793.022 164444.5884 194331.8104 198895.3339 0.81068116 0.685230643 0.87412453 1.048395349 0.854597203 0.773546583 0.919041279 0.826789574 0.977055654 1 17.6016499 -1 0.113070154 1.025261437 0.2816808 0.271183452 0.090021208 165.6010351 1.303840354 0.821850956 19.26421035 0.1 1 -0.743580636 TTS(ph)PEPR ddPTM_HeLa_A485_30min_R1 3 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 T(0.008)T(0.034)S(0.959)PEPR;T(0.021)T(0.03)S(0.949)PEPR;T(0.151)T(0.41)S(0.439)PEPR ;; 99.7 0.0046207 8074600000 10080900 12735700 7206220 13327100 8043120 11224900 12501300 16452300 11246500 16520700 TRUE FALSE FALSE 12323361.43 14225029.33 9872100.654 14055125.73 7242318.732 11812618.41 9830295.129 12417347.63 13503569.39 12402393.53 0.993627673 1.146958391 0.795983503 1.133259132 0.583945245 0.952446669 0.792612741 1.001205743 1.088787367 1 23.56411524 -4.752903473 24.9946154 0.911006808 1.070293019 0.129464541 0.156443896 353.8471906 1036103.542 0.0387313 0.099045093 1.77E-05 4.752903473 0.159286211 TTS(ph)PEPR ddPTM_HeLa_A486_30min_R1 1 TTSPEPR 7 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 T(0.092)T(0.183)S(0.725)PEPR 95.741 0.0055188 4445500000 7030900 3561300 5098800 2197500 4120800 8889600 5626400 4739400 7910000 8220100 TRUE FALSE FALSE 6538070.218 3279089.618 7073191.911 5115891.056 3603930.839 7792891.535 4218615.21 3660342.08 8595645.169 6161733.456 1.061076443 0.532169988 1.147922409 0.830268153 0.584889117 1.264723895 0.684647468 0.59404421 1.395004381 1 22.55490485 -7.765968238 24.99990231 1.197502135 0.838128203 0.242849968 0.254285746 165.9099006 915788.9214 0.207747977 0.060758031 1.71E-08 7.765968238 -0.359373931 TTS(ph)PLEEEER ddPTM_HeLa_A485_30min_R1 4 TTSPLEEEER 10 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.004)T(0.006)S(0.99)PLEEEER;TT(0.002)S(0.998)PLEEEER;TT(0.002)S(0.998)PLEEEER;T(0.003)T(0.014)S(0.983)PLEEEER ;;; 301.53 5.06E-51 3972950000 2959000 3965510 3423070 3114920 3986100 3503910 4244910 4435920 3152490 3673780 TRUE FALSE FALSE 3617219.342 4429241.899 4689406.039 3285080.192 3589229.888 3687369.31 3337950.301 3348003.665 3785165.827 2757974.257 1.311549349 1.60597652 1.700308125 1.191120687 1.301400794 1.336984673 1.210290594 1.213935792 1.37244422 1 21.39517756 -3.764863094 0.072662731 0.585771109 2.483675055 0.444095078 0.143799423 118.7072706 1.180512582 8.130348808 27.00348376 0.000171845 3.764863094 1.897903945 TTS(ph)PLEEEER ddPTM_HeLa_A486_30min_R1 4 TTSPLEEEER 10 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.005)T(0.002)S(0.993)PLEEEER;TT(0.001)S(0.999)PLEEEER;T(0.048)T(0.014)S(0.939)PLEEEER;TT(0.001)S(0.999)PLEEEER ;;; 330.12 2.72E-66 5166020000 5728700 5878210 4112940 1741740 5456820 5348630 5584280 5447900 4881220 6175750 TRUE FALSE FALSE 5327147.713 5412399.232 5705580.516 4054858.743 4772374.753 4688770.411 4187034.08 4207532.097 5304328.08 4629302.003 1.150745341 1.169160973 1.232492612 0.875911474 1.030905901 1.012846085 0.904463368 0.908891253 1.145815952 1 22.14236325 -5.252148046 24.95596437 0.978900362 1.182635785 0.599336979 0.075429465 436.4825621 1172363.616 0.02025748 0.034487886 5.60E-06 5.252148046 0.203735423 TTS(ph)PPEVSGYSYEK ddPTM_HeLa_A485_30min_R1 4 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.284)T(0.284)S(0.432)PPEVSGYSYEK;TT(0.002)S(0.998)PPEVSGYSYEK;T(0.152)T(0.152)S(0.696)PPEVSGYSYEK;T(0.001)T(0.048)S(0.952)PPEVSGYSYEK ;;; 215.56 1.45E-27 23642800000 8613000 8404840 6468150 11357380 12390200 9236210 13759650 13024690 8237880 14593650 TRUE FALSE FALSE 10528932.14 9387712.926 8860987.847 11977804.91 11156588.18 9719803.674 10819788.37 9830364.356 9891146.954 10955721.63 0.961044146 0.856877643 0.808800018 1.093292191 1.018334397 0.887189726 0.987592487 0.897281319 0.902829342 1 23.38518118 -5.231162176 24.99937384 0.964581561 0.873704323 0.2778096 0.06906221 1009.000885 833113.7655 0.019589881 0.033924709 5.87E-06 5.231162176 -0.090877238 TTS(ph)PPEVSGYSYEK ddPTM_HeLa_A486_30min_R1 5 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.026)T(0.026)S(0.947)PPEVSGYSYEK;TT(0.005)S(0.995)PPEVSGYSYEK;T(0.003)T(0.021)S(0.976)PPEVSGYSYEK;T(0.002)T(0.022)S(0.976)PPEVSGYSYEK;TT(0.001)S(0.999)PPEVSGYSYEK ;;;; 263.72 7.07E-54 17805500000 9545950 9266790 5034470 3865880 9206590 10145230 11416480 11636340 7772650 11312770 TRUE FALSE FALSE 8876828.2 8532455.811 6983951.612 8999964.011 8051813.634 8893614.672 8559955.953 8986999.402 8446389.56 8479978.758 1.0467984 1.006188347 0.823581263 1.061319169 0.949508703 1.048777942 1.009431297 1.05979032 0.996039 1 23.01562922 -6.263236698 24.92688209 1.025708581 0.975182024 0.110853721 0.063758719 344.8311514 4782395.946 0.021792965 0.020209072 5.45E-07 6.263236698 -0.050526557 TTS(ph)PSSDTDLLDR ddPTM_HeLa_A485_30min_R1 4 TTSPSSDTDLLDR 13 0 C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6;K7ENU0;K7ERZ4;K7EJ43 C9J9G2 PHF12 PHD finger protein 12 1 0 TT(0.002)S(0.998)PSSDTDLLDR;TT(0.072)S(0.924)PS(0.003)SDTDLLDR;TT(0.017)S(0.972)PS(0.01)S(0.001)DTDLLDR;T(0.013)T(0.013)S(0.974)PS(0.001)SDTDLLDR ;;; 276.78 1.56E-67 78480000 700598 941444 884314 851922 1133224 877492 1069236 1274620 764735 1167160 TRUE FALSE FALSE 856443.6081 1051537.686 1211458.548 898460.3417 1020396.24 923436.1243 840784.9937 962017.4465 918210.2999 876208.492 0.977442716 1.200099857 1.382614479 1.025395611 1.16455872 1.053899994 0.959571839 1.097932119 1.04793586 1 19.74091467 -6.076637999 1.587853106 1.031880874 1.172518591 0.222241058 0.107428068 0.581595355 2.95631423 0.044758366 0.046829222 8.38E-07 6.076637999 0.140637718 TTS(ph)PSSDTDLLDR ddPTM_HeLa_A486_30min_R1 2 TTSPSSDTDLLDR 13 0 C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6;K7ENU0;K7ERZ4;K7EJ43 C9J9G2 PHF12 PHD finger protein 12 1 0 T(0.001)T(0.027)S(0.966)PS(0.005)S(0.001)DTDLLDR;TTS(0.999)PS(0.001)SDTDLLDR ; 281.94 8.04E-49 1277600000 971910 1102450 800400 383500 1134740 993560 1044820 1138900 912210 1080900 TRUE FALSE FALSE 903784.1279 1015087.847 1110336.315 892807.381 992410.3282 870984.669 783394.985 879597.332 991281.0973 810235.6045 1.115458421 1.252830462 1.37038697 1.101910822 1.224841667 1.074977036 0.966873068 1.085606862 1.22344796 1 19.62798196 -6.269859463 9.243298061 1.068978717 1.217898398 0.367061745 0.093714608 0.211500652 192.3417774 0.033231724 0.030543835 5.37E-07 6.269859463 0.148919681 TTS(ph)RS(ph)PVLSR ddPTM_HeLa_A485_30min_R1 1 TTSRSPVLSR 10 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;H7C3Z6;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 2 0 T(0.3)T(0.347)S(0.397)RS(0.956)PVLSR 57.804 0.037725 362540000 249020 289650 265110 322630 336420 289950 412480 372870 250830 491070 TRUE FALSE FALSE 304413.6399 323522.0479 363185.2211 340254.46 302924.8436 305131.3337 324350.2783 281423.0479 301169.2803 368655.2865 0.825740607 0.877573331 0.985162113 0.922961022 0.821702156 0.827687395 0.879819957 0.76337722 0.816940083 1 18.49191292 -5.760275615 24.99992812 0.839973247 0.90693191 0.101856326 0.069216639 56.07653275 1204613.53 0.020678218 0.025208213 1.74E-06 5.760275615 0.066958663 TTSIS(ph)PALAR ddPTM_HeLa_A485_30min_R1 2 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 TTS(0.004)IS(0.996)PALAR;TT(0.001)S(0.01)IS(0.989)PALAR ; 137.62 3.20E-05 1723570000 691930 826800 730010 765880 965050 789650 1036660 991320 668840 1132520 TRUE FALSE FALSE 845847.4414 923487.0678 1000071.077 807718.0851 868966.2335 830994.853 815169.1223 748197.2157 803070.053 850203.6065 0.994876327 1.08619519 1.176272448 0.950029004 1.022068393 0.977406878 0.95879283 0.880021221 0.94456204 1 19.69744885 -5.861926404 1.155736907 0.940140878 1.077774339 0.420272526 0.059554374 0.435971108 1.236002548 0.026539632 0.035223223 1.37E-06 5.861926404 0.137633461 TTSIS(ph)PALAR ddPTM_HeLa_A486_30min_R1 2 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 TTS(0.024)IS(0.976)PALAR;T(0.001)T(0.003)S(0.025)IS(0.971)PALAR ; 156.14 1.85E-06 1221900000 927550 1037520 794550 318896 1113910 959010 1123880 1072280 951710 1127740 TRUE FALSE FALSE 862533.5349 955303.1366 1102221.039 742406.0041 974193.021 840697.0967 842673.3368 828145.2517 1034204.989 845346.5636 1.020331272 1.130072775 1.303868835 0.878226796 1.152418503 0.994499928 0.996837715 0.979651763 1.223409467 1 19.68918339 -5.261299816 24.99998204 1.033272523 1.14928913 0.196470605 0.110496316 21.19249351 3795773.206 0.029790746 0.047627741 5.48E-06 5.261299816 0.116016607 TTSQAHSLPLS(ph)PASTR ddPTM_HeLa_A485_30min_R1 3 TTSQAHSLPLSPASTR 16 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 TTSQAHSLPLS(0.999)PAS(0.001)TR;TTSQAHSLPLS(0.977)PAS(0.017)T(0.006)R;TTSQAHSLPLS(0.999)PASTR ;; 123.61 1.85E-05 718050000 619640 900860 942830 504411 1261640 711050 1042720 975860 790770 865920 TRUE FALSE FALSE 757476.7803 1006207.741 1291622.051 531965.6957 1136026.692 748279.4785 819934.3538 736528.8049 949470.2856 650062.0801 1.165237603 1.547864075 1.986921082 0.818330606 1.747566466 1.15108926 1.261317002 1.133013027 1.460584019 1 19.31021797 -6.196991931 0.900883583 1.199318717 1.485863068 0.102189711 0.320445075 1.379669309 2.420113911 0.188312991 0.18620386 6.35E-07 6.196991931 0.286544351 TTSQAHSLPLS(ph)PASTR ddPTM_HeLa_A486_30min_R1 2 TTSQAHSLPLSPASTR 16 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 0 TTSQAHS(0.002)LPLS(0.998)PASTR;TTSQAHSLPLS(1)PASTR ; 119.38 5.39E-05 957130000 843980 856780 775370 76239 1091580 768920 927570 888020 888570 531120 TRUE FALSE FALSE 784821.3603 788885.6325 1075614.029 177488.2449 954663.8578 674058.4682 695482.1752 685837.2313 965591.963 398124.095 1.971298322 1.981506878 2.70170543 0.445811362 2.397905251 1.693086343 1.746897975 1.722672001 2.425354243 1 18.60285866 -10.40186344 3.444422529 0.992366461 1.880832313 0.175779451 0.582538194 345774418.5 494270175.4 26242050.77 0.138556126 3.96E-11 10.40186344 0.888465852 TTSRS(ph)PVLSR ddPTM_HeLa_A485_30min_R1 5 TTSRSPVLSR 10 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;H7C3Z6;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 T(0.021)T(0.021)S(0.017)RS(0.942)PVLSR;T(0.034)T(0.166)S(0.027)RS(0.774)PVLSR;T(0.003)T(0.023)S(0.003)RS(0.97)PVLSR;TTSRS(1)PVLSR;T(0.002)T(0.002)S(0.001)RS(0.996)PVLSR ;;;; 130.65 3.80E-05 12216700000 2658440 3118650 2900020 3117110 3837290 3161360 4296970 4176820 2796820 4706000 TRUE FALSE FALSE 3249800.806 3483348.989 3972858.078 3287389.826 3455235.934 3326883.921 3378887.256 3152448.346 3358116.12 3532880.808 0.919872756 0.985979765 1.124537819 0.930512521 0.978022221 0.941691527 0.956411337 0.892316644 0.95053196 1 21.75241365 TTSRS(ph)PVLSR ddPTM_HeLa_A486_30min_R1 3 TTSRSPVLSR 10 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;H7C3Z6;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 T(0.003)T(0.01)S(0.015)RS(0.971)PVLSR;TTS(0.001)RS(0.999)PVLSR;T(0.008)T(0.023)S(0.004)RS(0.965)PVLSR ;; 123.99 5.96E-05 7870030000 1795890 1622800 1442970 680519 2179390 1786920 2069500 2136880 1598800 2143760 TRUE FALSE FALSE 1670007.385 1494203.418 2001726.628 1584282.624 1906030.584 1566467.978 1551689.211 1650359.072 1737385.271 1606948.542 1.039241358 0.929838995 1.245669401 0.985895056 1.186117996 0.974809048 0.965612258 1.027014262 1.081170445 1 20.6158923 TTSRSPVLS(ph)R ddPTM_HeLa_A486_30min_R1 1 TTSRSPVLSR 10 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;H7C3Z6;E7EN19;O95819-6 C9J840;E7EN19 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 TT(0.001)S(0.017)RS(0.044)PVLS(0.938)R 120.75 0.003138 642910000 474420 505560 385420 203470 604800 490390 614660 583870 463170 605680 TRUE FALSE FALSE 441165.6079 465497.5844 534664.9459 473688.4428 528940.3445 429890.6677 460865.5668 450935.5468 503317.9485 454013.7857 0.971700908 1.025293943 1.177640333 1.043334933 1.165031462 0.946866992 1.015091571 0.993219944 1.10859618 1 18.79237658 -6.273617329 24.99898448 1.01247723 1.077515223 0.178579382 0.068449306 1441.782938 2959696.313 0.024236295 0.021537986 5.33E-07 6.273617329 0.065037993 TTSSTATAQTVPIDS(ph)FHNLSFTEQIQQHSLPR ddPTM_HeLa_A486_30min_R1 1 TTSSTATAQTVPIDSFHNLSFTEQIQQHSLPR 32 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 TTSSTATAQTVPIDS(0.311)FHNLS(0.311)FT(0.311)EQIQQHS(0.068)LPR 63.761 0.0050403 263230000 15763 12672 9272.1 7949.3 20732 8497.2 18907 18787 3498.3 17891 TRUE FALSE FALSE 14658.0951 11667.82457 12862.50544 18506.37214 18131.59924 7448.901857 14176.26862 14509.61022 3801.535461 13410.97715 1.092992325 0.870020465 0.959102778 1.379942112 1.351996878 0.555433193 1.057064557 1.081920434 0.283464465 1 13.71112674 -6.257965463 24.98181334 0.817039563 1.120623825 0.277313273 0.269225337 483.7797794 3478988.466 0.093178494 0.089592775 5.52E-07 6.257965463 0.303584261 TTSSTATAQTVPIDSFHNLS(ph)FTEQIQQHSLPR ddPTM_HeLa_A485_30min_R1 2 TTSSTATAQTVPIDSFHNLSFTEQIQQHSLPR 32 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 TTSSTATAQTVPIDS(0.019)FHNLS(0.424)FT(0.424)EQIQQHS(0.133)LPR;TTSSTATAQTVPIDS(0.001)FHNLS(0.449)FT(0.449)EQIQQHS(0.101)LPR ; 170.6 1.00E-14 929520000 34629 32693 37425 20806.5 56605 40283 46702 50839 29806 33847 TRUE FALSE FALSE 42332.10158 36516.16196 51270.06488 21943.10641 50969.20745 42392.15559 36723.73618 38370.65554 35787.7908 25409.56581 1.665990749 1.437102949 2.017746595 0.863576599 2.005906273 1.66835419 1.445272086 1.510087021 1.408437715 1 14.6330841 -8.348893624 0.862741767 0.998117018 1.594540939 0.252079268 0.305800578 1.656782173 2.259973752 0.286633135 0.097175911 4.48E-09 8.348893624 0.596423921 TTSSTATAQTVPIDSFHNLSFTEQIQQHS(ph)LPR ddPTM_HeLa_A486_30min_R1 1 TTSSTATAQTVPIDSFHNLSFTEQIQQHSLPR 32 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 TTSSTATAQTVPIDS(0.224)FHNLS(0.224)FT(0.224)EQIQQHS(0.327)LPR 116.84 3.02E-05 326980000 16183 12736 12193 4696.3 20976 13126 17032 15635 13698 11654 TRUE FALSE FALSE 15048.65527 11726.75298 16914.45614 10933.22374 18344.99449 11506.64758 12770.41345 12075.25181 14885.35367 8735.762545 1.722649304 1.342384585 1.936231216 1.251547725 2.099987768 1.317188685 1.461854462 1.382277935 1.703955847 1 13.09271793 -11.812112 0.253654451 5.15E-17 1.637834734 0.300308438 0.267411032 64.47807131 1.7191927 35.38251542 0.36985621 1.54E-12 11.812112 1.637834734 TTSVSLTIGSSS(ph)PK ddPTM_HeLa_A485_30min_R1 2 TTSVSLTIGSSSPK 14 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;D6R9Z5;D6RBH5;D6RBB1;H0Y952;Q8WX93-6 Q8WX93-3 PALLD Palladin 1 0 TTSVSLTIGSS(0.002)S(0.998)PK;TTSVSLTIGSS(0.124)S(0.875)PK ; 260.08 1.05E-41 682880000 942840 810610 505130 1782910 1329070 809780 1507520 1347850 683490 2274700 TRUE FALSE FALSE 1152571.505 905403.7881 691998.6072 1880305.859 1196743.124 852178.8286 1185426.037 1017287.674 820660.1737 1707659.153 0.674942364 0.530201701 0.405232277 1.101101385 0.700809129 0.499033327 0.694181877 0.595720564 0.480576099 1 20.70358861 -10.54531664 3.100562431 1.014178095 0.634461072 0.267768619 0.182838317 85304586.4 96492535.32 10098775.88 0.048293034 2.85E-11 10.54531664 -0.379717023 TTSVSLTIGSSS(ph)PK ddPTM_HeLa_A486_30min_R1 4 TTSVSLTIGSSSPK 14 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;D6R9Z5;D6RBH5;D6RBB1;H0Y952;Q8WX93-6 Q8WX93-3 PALLD Palladin 1 0 TTSVSLTIGSS(0.13)S(0.87)PK;TTSVSLTIGSS(0.036)S(0.964)PK;TTSVSLTIGSS(0.183)S(0.817)PK;TTSVSLTIGSSS(1)PK ;;; 336.23 2.01E-81 1407190000 2612310 2227060 1013900 2471190 1959970 2820070 4095450 3500490 1745470 4868260 TRUE FALSE FALSE 2429200.559 2050579.655 1406509.233 5753055.207 1714132.287 2472158.436 3070725.093 2703504.842 1896768.745 3649216.009 0.665677382 0.561923342 0.385427782 1.576518132 0.469726177 0.677449192 0.841475288 0.740845386 0.519774313 1 21.79915512 -11.48152976 2.048418316 3.688382579 0.722641675 0.067937305 0.315199968 17532630.6 1307273.359 218460799.5 0.079674084 3.30E-12 11.48152976 -2.965740903 TTT(ph)PPDSGVLFEGLGISTRPR ddPTM_HeLa_A485_30min_R1 3 TTTPPDSGVLFEGLGISTRPR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 T(0.172)T(0.172)T(0.656)PPDSGVLFEGLGISTRPR;T(0.402)T(0.124)T(0.469)PPDS(0.004)GVLFEGLGISTRPR;T(0.033)T(0.158)T(0.808)PPDS(0.001)GVLFEGLGISTRPR ;; 103.58 0.00021576 805250000 166646 193906 166284 213129 253418 189090 245725 264821 168739 280911 TRUE FALSE FALSE 203715.8278 216581.6199 227799.3713 224771.6976 228186.8141 198990.46 193223.8464 199873.2345 202603.3695 210885.0575 0.966004089 1.027012642 1.080206317 1.065849332 1.08204354 0.943596774 0.916251956 0.94778282 0.960728901 1 17.68609735 -6.272952403 24.69258306 0.94806975 1.046467558 0.600398627 0.03677219 434.7102299 932343.5686 0.013549331 0.012057386 5.33E-07 6.272952403 0.098397807 TTT(ph)PPDSGVLFEGLGISTRPR ddPTM_HeLa_A486_30min_R1 1 TTTPPDSGVLFEGLGISTRPR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 T(0.075)T(0.075)T(0.849)PPDSGVLFEGLGISTRPR 90.453 0.001304 205970000 91822 92617 66162 39293 98281 91050 101200 106520 80928 112890 TRUE FALSE FALSE 85385.75197 85277.69161 91781.69828 91476.08976 85953.68055 79817.17673 75878.68962 82267.72132 87942.9042 84621.60921 1.009030114 1.007753131 1.08461301 1.081001539 1.015741503 0.94322452 0.896682187 0.972183371 1.039248781 1 16.3687385 -6.06189694 4.869046119 0.964577632 1.04614992 0.416687425 0.041886261 0.215728049 10.31058417 0.015115967 0.015451284 8.67E-07 6.06189694 0.081572289 TTTAAGSSHSRPGVPVEGS(ph)PGRNPGV ddPTM_HeLa_A485_30min_R1 4 TTTAAGSSHSRPGVPVEGSPGRNPGV 26 2 Q8NE01-2;Q8NE01 Q8NE01-2 CNNM3 Metal transporter CNNM3 1 0 TTTAAGSSHSRPGVPVEGS(1)PGRNPGV;TTTAAGSSHSRPGVPVEGS(1)PGRNPGV;TTTAAGSSHSRPGVPVEGS(1)PGRNPGV;TTTAAGSSHSRPGVPVEGS(1)PGRNPGV ;;; 291.31 2.74E-90 2179730000 576223 858810 536567 321258 680540 621350 873620 837820 638560 1134090 TRUE FALSE FALSE 704401.8184 959240.3588 735065.4617 338807.5111 612783.0481 653882.9252 686963.9502 632343.3313 766713.1348 851382.2344 0.827362599 1.1266859 0.863378906 0.397949942 0.719750804 0.768025099 0.806880767 0.742725542 0.900551014 1 19.69944746 -5.000389506 24.99984344 0.742552331 0.981526349 0.215703287 0.161288065 18.35602759 1178496.406 0.041844945 0.085583485 9.99E-06 5.000389506 0.238974018 TTTAAGSSHSRPGVPVEGS(ph)PGRNPGV ddPTM_HeLa_A486_30min_R1 3 TTTAAGSSHSRPGVPVEGSPGRNPGV 26 2 Q8NE01-2;Q8NE01 Q8NE01-2 CNNM3 Metal transporter CNNM3 1 0 TTTAAGSSHSRPGVPVEGS(1)PGRNPGV;TTTAAGSSHSRPGVPVEGS(1)PGRNPGV;TTTAAGSSHSRPGVPVEGS(1)PGRNPGV ;; 252.78 3.09E-62 923140000 408629 415173 408934 30411.9 620570 345492 375717 328315 584360 273929 TRUE FALSE FALSE 379986.2173 382273.1794 567284.1964 70800.44013 542732.324 302868.7097 281708.6327 253564.8416 635012.7953 205335.3954 1.850563642 1.861701333 2.762719965 0.344803876 2.643150358 1.474995137 1.371943849 1.234881307 3.092563725 1 17.64762281 TTTPPPSQIPDPPFSS(ph)PITPHR ddPTM_HeLa_A485_30min_R1 1 TTTPPPSQIPDPPFSSPITPHR 22 0 Q6ZS30-1;Q6ZS30 Q6ZS30-1 NBEAL1 Neurobeachin-like protein 1 1 0 TTTPPPSQIPDPPFS(0.14)S(0.673)PIT(0.187)PHR 96.019 0.00075448 315630000 48104 76349 84692 72410 109990 78690 103960 111660 68938 99139 TRUE FALSE FALSE 58804.56884 85277.3514 116023.0951 76365.57495 99039.0094 82810.08672 81748.09672 84275.20992 82773.22426 74425.47182 0.790113484 1.145808677 1.558916488 1.02606773 1.330713894 1.112657867 1.098388693 1.132343643 1.112162573 1 16.18350884 -6.494052542 24.35502394 1.098005287 1.186451275 0.038888789 0.188410488 1908.784616 1612719.16 0.067375977 0.059299549 3.21E-07 6.494052542 0.088445988 TTTPPPSQIPDPPFSS(ph)PITPHR ddPTM_HeLa_A486_30min_R1 1 TTTPPPSQIPDPPFSSPITPHR 22 0 Q6ZS30-1;Q6ZS30 Q6ZS30-1 NBEAL1 Neurobeachin-like protein 1 1 0 TTTPPPSQIPDPPFS(0.161)S(0.773)PIT(0.066)PHR 100.27 1.63E-06 0 34788 38864 21904 11287 33967 35723 38307 37944 29951 43613 TRUE FALSE FALSE 32349.54085 35784.2751 30385.81541 26276.70641 29706.54213 31315.85946 28722.18343 29304.97951 32547.1768 32692.02093 0.989524047 1.094587428 0.929456624 0.803765129 0.908678671 0.95790528 0.878568611 0.896395471 0.995569435 1 14.99665094 -4.854271042 6.785202999 0.911778622 1.04112419 0.390653983 0.059648364 0.180923632 10.99629198 0.015418812 0.032690559 1.40E-05 4.854271042 0.129345567 TTWGDGGENS(ph)PCNVVSK ddPTM_HeLa_A485_30min_R1 2 TTWGDGGENSPCNVVSK 17 0 H3BM38;O00161;H3BV99;H3BP15;H3BQY9 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 0 TTWGDGGENS(1)PCNVVSK;TTWGDGGENS(1)PCNVVSK ; 185.28 1.07E-17 507040000 646240 408910 249430 833840 412510 482500 788740 607480 451990 1613350 TRUE FALSE FALSE 789993.8585 456728.4675 341704.5366 879390.5678 371439.056 507762.9539 620219.2556 458494.5775 542700.2471 1211171.537 0.652255964 0.377096434 0.282127284 0.726066078 0.306677498 0.419232899 0.512082093 0.378554617 0.448078766 1 20.20797178 -10.25989299 3.316910225 1.001927736 0.45024564 0.595262332 0.134551596 60424692.89 87969495.39 1179285.297 0.034184293 5.50E-11 10.25989299 -0.551682096 TTWGDGGENS(ph)PCNVVSK ddPTM_HeLa_A486_30min_R1 3 TTWGDGGENSPCNVVSK 17 0 H3BM38;O00161;H3BV99;H3BP15;H3BQY9 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 0 TTWGDGGENS(1)PCNVVSK;TTWGDGGENS(1)PCNVVSK;TTWGDGGENS(1)PCNVVSK ;; 198.42 5.66E-25 1109000000 964820 1009540 655740 451840 1352300 1469110 1315930 1229220 1258010 2042550 TRUE FALSE FALSE 897191.1003 929540.3737 909660.0893 1051906.355 1182681.924 1287866.145 986670.3955 949353.4397 1367055.32 1531082.185 0.585984939 0.60711331 0.594128844 0.687034546 0.772448361 0.841147626 0.644426802 0.620053874 0.892868673 1 20.5461203 -13.99999993 0.064874378 2.116895525 0.256549863 0.645590644 0.081808942 250.164691 1.175023058 42.86547484 6.185436966 1.00E-14 13.99999993 -1.860345662 TTYDS(ph)AEEENKENLYAGK ddPTM_HeLa_A485_30min_R1 2 TTYDSAEEENKENLYAGK 18 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 TTYDS(1)AEEENKENLYAGK;TTYDS(1)AEEENKENLYAGK ; 137.12 1.62E-06 855650000 410600 279373 147309 669440 360990 305060 548770 419220 250180 873970 TRUE FALSE FALSE 501936.5534 312043.2421 201804.7291 706009.8121 325048.5681 321032.4699 431520.8065 316405.6377 300388.8312 656105.3632 0.765024311 0.475599286 0.307579758 1.076061638 0.495421294 0.489300176 0.657700471 0.482248211 0.457836268 1 19.32356799 -10.5840576 2.691894144 1.032129165 0.576594853 0.279843706 0.202813828 30995950.71 29515993.83 7083590.043 0.054005713 2.61E-11 10.5840576 -0.455534313 TTYDS(ph)AEEENKENLYAGK ddPTM_HeLa_A486_30min_R1 2 TTYDSAEEENKENLYAGK 18 1 Q9HAW4-2;Q9HAW4-3;Q9HAW4;E7ESG2 Q9HAW4-2 CLSPN Claspin 1 0 TTYDS(1)AEEENKENLYAGK;TTYDS(1)AEEENKENLYAGK ; 183.86 4.04E-18 1450790000 702990 632730 226520 414050 515080 973790 1084180 940010 511200 1320670 TRUE FALSE FALSE 653714.0312 582590.1704 314234.6104 963929.3249 450473.8635 853653.6906 812906.6967 725990.2433 555511.2276 989965.6359 0.660340124 0.588495347 0.317419715 0.973699783 0.4550399 0.862306387 0.821146378 0.733348933 0.56114193 1 19.91701892 -5.260116806 24.99934188 0.753828809 0.528726105 0.28887618 0.178216181 164.2915083 3105411.466 0.047432044 0.076681969 5.49E-06 5.260116806 -0.225102704 TVAFLNQFVVHTVQFLNR ddPTM_HeLa_A485_30min_R1 2 TVAFLNQFVVHTVQFLNR 18 0 F5H0A7;F5GXZ4;F5H2P1;F5GWI9;F5GXZ7;F5GZ97;Q9Y3C0 F5H0A7 CCDC53 WASH complex subunit CCDC53 0 0 ; ; 270.42 2.77E-58 20521000 14073.8 14210.4 13911.3 10514.7 17025.9 11043.8 19678.1 20663 7485.28 16031.9 FALSE FALSE TRUE 17204.46826 15872.18267 19057.66877 11089.09144 15330.74161 11622.03629 15473.71318 15595.36685 8987.507037 12035.44238 1.429483663 1.318786811 1.583462259 0.921369659 1.273799594 0.965650944 1.285678806 1.295786758 0.74675336 1 13.55500155 -3.02425313 0.240029348 0.974041957 2.274898941 0.353149506 0.198730143 23.20771034 0.709869545 0.286631269 9.879623041 0.000945686 3.02425313 1.300856984 TVAFLNQFVVHTVQFLNR ddPTM_HeLa_A486_30min_R1 1 TVAFLNQFVVHTVQFLNR 18 0 F5H0A7;F5GXZ4;F5H2P1;F5GWI9;F5GXZ7;F5GZ97;Q9Y3C0 F5H0A7 CCDC53 WASH complex subunit CCDC53 0 0 234.48 7.09E-37 16118000 13264 14107 17243 8291.6 15965 12552 22342 19042 14843 18642 FALSE FALSE TRUE 12334.2621 12989.10994 23919.95138 19303.26383 13962.52083 11003.46186 16751.79529 14706.55228 16129.60319 13973.92186 0.882662879 0.929525016 1.711756486 1.381377685 0.999184121 0.787428323 1.198789821 1.052428404 1.15426459 1 13.77044936 -5.781844562 24.89750054 1.030746566 1.239803435 0.135858337 0.23910578 488.8508905 596471.2451 0.080552768 0.091444014 1.65E-06 5.781844562 0.209056869 TVAISDAAQLPHDYCT(ph)TPGGTLFS(ph)TTPGGTR ddPTM_HeLa_A485_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.001)CT(0.525)T(0.474)PGGT(0.032)LFS(0.442)T(0.325)T(0.197)PGGT(0.005)R 102.94 0.00024225 3840800000 1029700 1271300 1306000 1159800 1694800 1098300 1646200 1184400 1293700 1416200 TRUE FALSE FALSE 1258753.213 1419967.476 1789143.747 1223156.937 1526059.761 1155805.29 1294475.922 893924.0429 1553333.723 1063167.403 1.183965205 1.335601028 1.682842929 1.150483859 1.435389908 1.087133866 1.217565473 0.840812124 1.461043406 1 20.01993735 -6.267592976 24.46713643 1.117377625 1.362987591 0.256180451 0.201204092 518.1081309 2060027.869 0.067259178 0.060829539 5.40E-07 6.267592976 0.245609965 TVAISDAAQLPHDYCT(ph)TPGGTLFSTT(ph)PGGTR ddPTM_HeLa_A485_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDYCT(0.823)T(0.177)PGGT(0.002)LFS(0.004)T(0.091)T(0.903)PGGTR 186.51 3.45E-21 3240200000 277010 302630 344220 283070 439490 262520 405220 337370 307740 398530 TRUE FALSE FALSE 338629.9188 338019.946 471561.3022 298533.3973 395732.8325 276265.1413 318641.4367 254629.4785 369500.5952 299183.8054 1.131845751 1.129806961 1.576159183 0.997826059 1.322708065 0.92339604 1.06503571 0.851080419 1.23502873 1 18.19067256 -6.262250245 24.998494 1.008733675 1.232157238 0.288952776 0.169876013 94.5825515 2915879.765 0.055973814 0.052259573 5.47E-07 6.262250245 0.223423563 TVAISDAAQLPHDYCTT(ph)PGGT(ph)LFSTTPGGTR ddPTM_HeLa_A486_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.001)CT(0.477)T(0.523)PGGT(0.801)LFS(0.025)T(0.019)T(0.153)PGGT(0.001)R 109.91 5.97E-05 2691900000 680120 891090 752630 219580 931090 736510 930530 931810 748510 770070 TRUE FALSE FALSE 632447.1001 820476.7831 1044068.492 511193.337 814304.0101 645646.8845 697701.5519 719657.2043 813391.4495 577239.4597 1.095640794 1.421380277 1.80872682 0.8855828 1.410686668 1.11850788 1.208686517 1.246722122 1.409105763 1 19.1388104 -5.269355059 24.99889464 1.200936621 1.439862401 0.220287252 0.221584085 949.4124823 2998385.611 0.061035773 0.09238755 5.38E-06 5.269355059 0.23892578 TVAISDAAQLPHDYCTT(ph)PGGT(ph)LFSTTPGGTRIIYDRK ddPTM_HeLa_A485_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.012)CT(0.438)T(0.475)PGGT(0.335)LFS(0.234)T(0.22)T(0.283)PGGT(0.004)RIIYDRK 78.366 0.00022551 199270000 41650 76836 61057 31935 154000 113460 170400 315260 63631 47030 TRUE FALSE FALSE 50914.89881 85821.30182 83644.52509 33679.52819 138667.2193 119400.5902 133992.648 237941.9907 76401.15804 35306.28652 1.442091588 2.43076546 2.369111377 0.9539244 3.927550386 3.38185071 3.795149849 6.739366105 2.16395338 1 15.10763747 -5.776939349 24.98957778 3.79699934 1.884825401 0.23418525 1.446794328 301.0088791 485294.8532 0.434991948 0.494956022 1.67E-06 5.776939349 -1.912173939 TVAISDAAQLPHDYCTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_HeLa_A485_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.001)CT(0.468)T(0.531)PGGT(0.16)LFS(0.475)T(0.076)T(0.287)PGGT(0.002)R 111.78 0.00013143 3577600000 737200 665320 795390 718220 1089800 744690 814280 697340 676380 900340 TRUE FALSE FALSE 901187.5967 743123.3865 1089637.86 757454.54 981295.6855 783680.8169 640302.4259 526316.2716 812123.2619 675901.8075 1.333311417 1.099454652 1.612124495 1.120657663 1.451831723 1.159459567 0.947330542 0.778687475 1.201540302 1 19.36645415 -6.573664682 3.857394372 0.965578245 1.316135169 0.473950381 0.168807319 0.187762239 5.842180413 0.063742979 0.049355901 2.67E-07 6.573664682 0.350556924 TVAISDAAQLPHDYCTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_HeLa_A486_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDYCT(0.135)T(0.865)PGGT(0.194)LFS(0.496)T(0.061)T(0.248)PGGT(0.001)R 125.93 5.20E-06 215800000 80381 106280 99860 28862 137390 92839 94421 113490 105070 92370 TRUE FALSE FALSE 74746.70699 97857.98573 138528.4663 67192.1946 120157.2651 81385.4681 70795.86712 87650.80447 114177.5522 69239.95077 1.079531487 1.413316801 2.000701399 0.970425222 1.735374791 1.175411987 1.022471367 1.265899289 1.649012614 1 16.07931708 TVAISDAAQLPHDYCTT(ph)PGGTLFS(ph)TTPGGTRIIYDRK ddPTM_HeLa_A485_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.008)CT(0.472)T(0.512)PGGT(0.111)LFS(0.322)T(0.297)T(0.275)PGGT(0.002)RIIYDRK 79.769 0.00040191 156420000 14643 27092 21586 15218 64900 43414 61106 123170 24028 25217 TRUE FALSE FALSE 17900.28483 30260.17373 29571.55967 16049.32081 58438.32812 45687.08991 48050.20391 92962.36438 28850.1992 18930.86598 0.945560802 1.59845692 1.562081718 0.847785876 3.086933697 2.413365028 2.538193654 4.910623975 1.523976728 1 14.20845279 -5.764189629 24.99930441 2.764073199 1.287299536 0.29023219 1.000900327 82.25016775 747641.0481 0.294688619 0.349268501 1.72E-06 5.764189629 -1.476773663 TVAISDAAQLPHDYCTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_A485_30min_R1 3 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.01)CT(0.28)T(0.69)PGGT(0.119)LFS(0.191)T(0.175)T(0.447)PGGT(0.089)R;TVAISDAAQLPHDYCT(0.18)T(0.819)PGGT(0.002)LFS(0.025)T(0.076)T(0.897)PGGT(0.001)R;TVAISDAAQLPHDY(0.001)CT(0.136)T(0.863)PGGT(0.029)LFS(0.059)T(0.052)T(0.856)PGGT(0.004)R ;; 178.2 2.68E-16 3152810000 455659 648159 639393 549047 710619 488512 734190 636534 562063 719640 TRUE FALSE FALSE 557018.7725 723955.5568 875931.0781 579040.0473 639867.2772 514089.7329 577324.3087 480423.0385 674863.8886 540246.992 1.031044653 1.340045512 1.621352994 1.071806148 1.184397668 0.951582777 1.068630307 0.88926555 1.249176578 1 19.04325961 -5.475732296 24.9436785 1.054310867 1.334211367 0.364429089 0.164388978 416.1051163 220147.5039 0.046111605 0.068392287 3.34E-06 5.475732296 0.2799005 TVAISDAAQLPHDYCTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_A486_30min_R1 4 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.002)CT(0.474)T(0.516)PGGT(0.063)LFS(0.125)T(0.135)T(0.682)PGGT(0.004)R;TVAISDAAQLPHDYCT(0.156)T(0.843)PGGT(0.018)LFS(0.323)T(0.202)T(0.457)PGGT(0.001)R;TVAISDAAQLPHDY(0.001)CT(0.247)T(0.752)PGGTLFS(0.004)T(0.178)T(0.818)PGGTR;TVAISDAAQLPHDY(0.001)CT(0.18)T(0.818)PGGT(0.001)LFS(0.005)T(0.024)T(0.971)PGGTR ;;; 193.15 1.26E-21 10664680000 1942279 2415310 1962210 682925 2743790 2034071 2403762 2496470 2027390 2074394 TRUE FALSE FALSE 1806135.272 2223912.039 2722030.262 1589883.913 2399638.273 1783128.001 1802315.323 1928078.279 2203125.798 1554952.24 1.161537458 1.430212441 1.750555542 1.022464788 1.543223136 1.14674133 1.159080823 1.239959806 1.416844672 1 20.56843884 -6.28345081 24.72038139 1.205432528 1.384845181 0.168789083 0.208747369 1395.304915 1567019.818 0.072408479 0.063911176 5.21E-07 6.28345081 0.179412653 TVAISDAAQLPHDYCTTPGGTLFS(ph)TTPGGTR ddPTM_HeLa_A486_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 TVAISDAAQLPHDYCT(0.007)T(0.006)PGGT(0.197)LFS(0.52)T(0.117)T(0.153)PGGT(0.001)R 111.27 6.23E-05 498000000 231570 243300 188210 61258 292410 213560 236140 256080 233800 279640 TRUE FALSE FALSE 215338.1388 224020.0219 261089.9524 142611.7198 255733.2112 187213.1385 177055.2744 197776.1742 254065.9722 209616.3238 1.02729661 1.068714582 1.245561165 0.680346441 1.220006183 0.893122897 0.844663579 0.943515135 1.212052418 1 17.67739155 TVAISDAAQLPHDYCTTPGGTLFSTT(ph)PGGTR ddPTM_HeLa_A485_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 TVAISDAAQLPHDYCTTPGGT(0.013)LFS(0.384)T(0.063)T(0.537)PGGT(0.002)R 138.93 6.62E-07 527180000 104160 163480 165530 131270 232050 166880 207560 203330 190270 208460 TRUE FALSE FALSE 127330.0327 182597.5639 226766.4353 138440.9477 208946.2872 175617.5788 163213.1104 153462.9987 228455.4437 156494.7584 0.813637683 1.166796676 1.449035339 0.884636323 1.335164764 1.122194638 1.042930204 0.980627085 1.459828087 1 17.25575481 -4.260780013 23.61672324 1.160569625 0.813637485 0.234409796 0.187857158 36.81869905 1318088.373 0.044381604 0.256906649 5.49E-05 4.260780013 -0.34693214 TVANLLSGK(ac)SPR ddPTM_HeLa_A485_30min_R1 2 TVANLLSGKSPR 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; TVANLLSGK(1)SPR;TVANLLSGK(1)SPR 287.83 8.86E-62 154576000 87939 108088 114387 91585 158638 104697 157464 154773 114866 144023 FALSE TRUE FALSE 107500.7272 120727.9514 156703.5113 96588.05664 142843.4437 110178.773 123820.53 116814.6791 137918.5526 108120.7166 0.994265766 1.116603322 1.449338445 0.893335335 1.32114777 1.019034802 1.145206339 1.080409774 1.27559784 1 16.72228345 TVANLLSGK(ac)SPR ddPTM_HeLa_A486_30min_R1 2 TVANLLSGKSPR 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; TVANLLSGK(1)SPR;TVANLLSGK(1)SPR 269.91 1.04E-49 185220000 93729 97936 85582 31428 114537 94738 108221 110773 94222 111095 FALSE TRUE FALSE 87159.08112 90175.19468 118721.6424 73165.97228 100170.7014 83050.18879 81142.96115 85552.40606 102389.2388 83276.08889 1.046627937 1.082846179 1.425639027 0.878595204 1.202874712 0.997287335 0.974384871 1.027334583 1.229515461 1 16.34561469 -5.288041203 24.99504063 1.047160779 1.174818758 0.182971497 0.135690101 1330.246482 1249895.085 0.037612152 0.055805558 5.15E-06 5.288041203 0.12765798 TVANLLSGKS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TVANLLSGKSPR 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TVANLLSGKS(1)PR;TVANLLS(0.004)GKS(0.996)PR ; 106.33 0.00026179 53433000000 4853170 5703930 4252343 5609400 7920380 6165840 9963250 10602130 4455942 7652710 TRUE FALSE FALSE 5932740.923 6370954.996 5825461.63 5915827.318 7131799.157 6488673.848 7834520.245 8001940.994 5350208.687 5745030.235 1.032673577 1.108950647 1.014000169 1.029729536 1.241385835 1.129441201 1.363703919 1.392845758 0.931275984 1 22.45388305 -5.757005619 24.86355096 1.203097454 1.048500875 0.161083204 0.137576505 162.2097656 909629.7153 0.040717178 0.050753201 1.75E-06 5.757005619 -0.154596579 TVANLLSGKS(ph)PR ddPTM_HeLa_A486_30min_R1 4 TVANLLSGKSPR 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TVANLLSGKS(1)PR;TVANLLSGKS(1)PR;TVANLLS(0.067)GKS(0.933)PR;TVANLLS(0.147)GKS(0.853)PR ;;; 155.88 2.61E-08 48595440000 31015190 27999120 18411240 13323690 33773660 29874640 40911510 41048170 22501910 35750250 TRUE FALSE FALSE 28841185.34 25780367.76 25540565.2 31018223.66 29537452.64 26189010.66 30675017.48 31702397.77 24452393.68 26798154.7 1.076237736 0.96202026 0.953071787 1.157476102 1.102219648 0.977269179 1.14466902 1.183006745 0.912465576 1 24.67563033 -5.242887765 24.85546359 1.076603481 0.993600963 0.117902188 0.086773607 1451.360695 1944529.673 0.023176331 0.040063842 5.72E-06 5.242887765 -0.083002519 TVANLLSGKS(ph)PRK ddPTM_HeLa_A485_30min_R1 2 TVANLLSGKSPRK 13 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TVANLLSGKS(1)PRK;TVANLLS(0.001)GKS(0.999)PRK ; 141.13 3.00E-07 777720000 275890 418880 293980 349060 923440 755910 1271650 1979170 375060 644870 TRUE FALSE FALSE 337260.7787 467864.3722 402735.4355 368128.2639 831499.0712 795488.2787 999951.5891 1493775.454 450331.1017 484115.777 0.696653145 0.966430748 0.83189901 0.760413689 1.717562432 1.643177762 2.065521589 3.085574826 0.930213646 1 18.88499259 -5.819780773 4.250622796 1.87395701 0.82143541 0.376302179 0.571139203 0.205935328 7.518683367 0.177280072 0.208430775 1.51E-06 5.819780773 -1.0525216 TVANLLSGKS(ph)PRK ddPTM_HeLa_A486_30min_R1 1 TVANLLSGKSPRK 13 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TVANLLS(0.001)GKS(0.999)PRK 136.43 4.26E-06 348610000 665390 542470 577140 565700 1552400 752770 1446900 1600500 442910 947080 TRUE FALSE FALSE 618749.5971 499482.7016 800624.0643 1316978.189 1357683.516 659900.891 1084870.316 1236101.089 481301.7954 709925.0035 0.871570369 0.70357108 1.127758651 1.855094809 1.912432313 0.92953606 1.528147777 1.741171367 0.677961465 1 19.4373071 -4.981381898 5.591688708 1.424438045 0.807528301 0.259385699 0.391582418 0.205670207 20.52144131 0.103833824 0.212953972 1.04E-05 4.981381898 -0.616909744 TVARS(ph)PVAPAR ddPTM_HeLa_A485_30min_R1 1 TVARSPVAPAR 11 1 O15525 O15525 MAFG Transcription factor MafG 1 0 T(0.043)VARS(0.957)PVAPAR 57.328 0.0069496 0 47166 96498 93630 45194 124660 78086 91950 128270 69665 67087 TRUE FALSE FALSE 57657.91398 107782.6017 128267.6333 47662.83378 112248.4127 82174.46222 72304.13134 96811.58138 83646.12649 50363.44554 1.144836565 2.140095867 2.546839913 0.946377542 2.228767541 1.631629078 1.435647036 1.922258899 1.66084996 1 15.62008937 -11.30437811 0.318839946 5.12E-10 1.810703686 0.183234385 0.467014096 74.66685207 3.106666354 53.48753347 0.427376483 4.96E-12 11.30437811 1.810703685 TVART(ph)PLGQR ddPTM_HeLa_A485_30min_R1 8 TVARTPLGQR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TVART(1)PLGQR;T(0.011)VART(0.989)PLGQR;TVART(1)PLGQR;T(0.021)VART(0.979)PLGQR;T(0.001)VART(0.999)PLGQR;T(0.039)VART(0.961)PLGQR;T(0.33)VART(0.67)PLGQR;TVART(1)PLGQR ;;;;;;; 123.28 0.00015117 38853410000 5229550 8337170 7860440 5790980 10978720 8350730 10935640 12785930 7157520 8364680 TRUE FALSE FALSE 6392845.356 9312129.508 10768343.86 6107326.574 9885640.088 8787961.31 8599151.178 9650160.62 8593968.611 6279519.217 1.018046945 1.482936701 1.71483572 0.97257869 1.574267033 1.399464037 1.369396427 1.536767432 1.368571114 1 22.58222267 -8.053933045 21.37519348 0.999999998 1.39449048 0.2125618 0.21985902 4350.562249 1724250.756 0.203291055 0.052489525 8.83E-09 8.053933045 0.394490483 TVART(ph)PLGQR ddPTM_HeLa_A486_30min_R1 7 TVARTPLGQR 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.232)VART(0.768)PLGQR;T(0.011)VART(0.989)PLGQR;T(0.008)VART(0.992)PLGQR;T(0.01)VART(0.99)PLGQR;T(0.005)VART(0.995)PLGQR;TVART(1)PLGQR;T(0.003)VART(0.997)PLGQR ;;;;;; 106.11 0.0011085 24985410000 6255160 5565700 5541800 2597994 8873430 5471990 7640090 8228190 4602280 6494140 TRUE FALSE FALSE 5816705.586 5124653.662 7687733.375 6048261.327 7760441.668 4796911.509 5728458.673 6354810.757 5001209.336 4867965.074 1.194894683 1.052730162 1.579249904 1.242461939 1.594185979 0.985403847 1.176766593 1.305434747 1.027371655 1 22.21488739 -6.288103351 24.95982138 1.122945761 1.325833979 0.29805175 0.177279712 1129.560671 1057364.236 0.062959296 0.055541404 5.15E-07 6.288103351 0.202888218 TVAS(ph)DLQK ddPTM_HeLa_A485_30min_R1 4 TVASDLQK 8 0 Q7L8J4;Q7L8J4-2 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 0 TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK ;;; 165.18 3.34E-05 2405350000 3339310 3061110 2191700 4676880 4005910 3505200 5471200 5014900 2763080 6469700 TRUE FALSE FALSE 4082127.989 3419080.186 3002501.034 4932366.112 3607067.535 3688726.852 4302233.424 3784987.912 3317604.812 4856922.856 0.840476184 0.703960159 0.618189978 1.015533139 0.74266519 0.759478164 0.885794062 0.779297515 0.683067224 1 22.21161114 -10.77183683 2.805461983 1.049862252 0.782067737 0.275570851 0.106538787 173914224.1 129496108.8 59458750.32 0.02706412 1.69E-11 10.77183683 -0.267794516 TVAS(ph)DLQK ddPTM_HeLa_A486_30min_R1 4 TVASDLQK 8 0 Q7L8J4;Q7L8J4-2 Q7L8J4 SH3BP5L SH3 domain-binding protein 5-like 1 0 TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK;TVAS(1)DLQK ;;; 155.53 0.00013026 2763850000 3912440 3803010 1856400 1710270 3503540 4155380 5465460 5064830 3055200 5799690 TRUE FALSE FALSE 3638198.16 3501645.637 2575247.796 3981594.992 3064093.344 3642731.464 4097944.1 3911678.773 3320027.196 4347409.874 0.836865689 0.805455602 0.592363699 0.915854522 0.70480894 0.837908449 0.942617379 0.899772252 0.763679361 1 22.05172469 -6.513378234 8.880182274 0.892864409 0.771053228 0.286739879 0.096690944 0.221812125 158.5996717 0.034546639 0.028553322 3.07E-07 6.513378234 -0.121811181 TVAT(ph)PLNQVANPNSAIFGGARPR ddPTM_HeLa_A485_30min_R1 2 TVATPLNQVANPNSAIFGGARPR 23 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 1 0 T(0.001)VAT(0.999)PLNQVANPNSAIFGGARPR;T(0.007)VAT(0.993)PLNQVANPNSAIFGGARPR ; 80.664 0.005273 2371080000 328380 371030 358430 406440 553190 403890 466590 556440 323800 470340 TRUE FALSE FALSE 401426.9981 414418.731 491028.1725 428642.788 498112.4612 425037.0559 366899.2348 419972.2175 388783.6899 353092.894 1.136887785 1.173681878 1.390648696 1.213966056 1.410712223 1.203754205 1.039101157 1.189409996 1.101080471 1 18.42968826 -6.558206371 6.915339168 1.100363443 1.268450753 0.459198197 0.092856459 0.191046552 27.16868155 0.03570913 0.027802378 2.77E-07 6.558206371 0.168087311 TVAT(ph)PLNQVANPNSAIFGGARPR ddPTM_HeLa_A486_30min_R1 2 TVATPLNQVANPNSAIFGGARPR 23 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 1 0 T(0.002)VAT(0.998)PLNQVANPNSAIFGGARPR;T(0.001)VAT(0.999)PLNQVANPNSAIFGGARPR ; 140.26 3.20E-07 1849600000 436660 461120 398270 239850 559750 433570 536980 532640 383220 625520 TRUE FALSE FALSE 406052.3889 424579.1718 552490.81 558382.9213 489540.9355 380080.5416 402621.9244 411369.4994 416437.8182 468885.7205 0.865994359 0.905506722 1.178305898 1.190872097 1.044051704 0.810603789 0.858678153 0.877334245 0.888143528 1 18.83887682 -6.245183851 23.2023988 0.877518231 1.046048766 0.333703227 0.105161116 380.1000041 542536.6824 0.038177231 0.038033654 5.69E-07 6.245183851 0.168530535 TVATPLNQVANPNSAIFGGARPR ddPTM_HeLa_A485_30min_R1 1 TVATPLNQVANPNSAIFGGARPR 23 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 0 102.45 1.78E-06 17625000 5084 4984.8 5531.1 5144.3 9594.8 5801.3 6974.6 6734.2 5625.9 9094.7 FALSE FALSE TRUE 6214.91826 5567.728998 7577.284058 5425.320083 8639.508023 6105.047097 5484.419733 5082.626891 6754.966526 6827.558666 0.910269478 0.815478749 1.109808708 0.794620793 1.265387593 0.894177172 0.803276838 0.744428154 0.989367775 1 12.73715409 -6.506742412 24.99149231 0.860935716 0.978308439 0.082171688 0.147418773 1546.41252 2395045.564 0.051632829 0.044270204 3.11E-07 6.506742412 0.117372723 TVCDAAEK(ac)GVR ddPTM_HeLa_A485_30min_R1 1 TVCDAAEKGVR 11 1 K7ER39;K7EL96;O60664-4;O60664-3;O60664 K7ER39 PLIN3 Perilipin-3 0 1 TVCDAAEK(1)GVR 139.86 0.0026165 22420000 7181.9 9053 9763.3 8383.9 11672 10068 12429 15706 14781 18139 FALSE TRUE FALSE 8779.488878 10111.6696 13375.15095 8841.891228 10509.8947 10595.14491 9773.442614 11854.07887 17747.41112 13617.28112 0.644731411 0.742561566 0.982218905 0.649313997 0.771805664 0.778066107 0.717723496 0.870517306 1.303300634 1 13.73315106 -7.598225241 5.519379669 1.145600026 0.762873875 0.661981139 0.111601154 0.117251244 6.189481528 0.076074624 0.027542269 2.52E-08 7.598225241 -0.382726151 TVCDAAEK(ac)GVR ddPTM_HeLa_A486_30min_R1 1 TVCDAAEKGVR 11 1 K7ER39;K7EL96;O60664-4;O60664-3;O60664 K7ER39 PLIN3 Perilipin-3 0 1 TVCDAAEK(1)GVR 153.12 0.00055187 19189000 8913.7 13310 9109.9 4394.9 13848 11917 12057 12994 10181 12577 FALSE TRUE FALSE 8288.89566 12255.26713 12637.49725 10231.54931 12111.05471 10446.8017 9040.211074 10035.54986 11063.49728 9427.637337 0.879212401 1.299929843 1.340473419 1.085271839 1.284633072 1.1081039 0.958905264 1.064481959 1.173517487 1 13.20268055 -6.516479671 24.63007684 1.051586079 1.189348697 0.169677537 0.133209206 415.491307 1599242.75 0.049151657 0.039493007 3.04E-07 6.516479671 0.137762618 TVDGPSGK(ac)LWR ddPTM_HeLa_A485_30min_R1 2 TVDGPSGKLWR 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; TVDGPSGK(1)LWR;TVDGPSGK(1)LWR 271.62 1.43E-45 955330000 772890 996010 1006070 801880 1205390 1019760 1309240 1383330 839900 1048060 FALSE TRUE FALSE 944816.7141 1112484.705 1378257.159 845684.6739 1085377.139 1073153.057 1029510.178 1044066.149 1008460.226 786797.9301 1.200837824 1.413939543 1.751729518 1.074843542 1.379486521 1.363950025 1.308481046 1.326981311 1.281727096 1 19.58563364 -11.09916375 0.245387013 0.573577063 1.40427439 0.300604637 0.162610508 42.01544434 1.47672415 10.28408015 0.268423221 7.96E-12 11.09916375 0.830697328 TVDGPSGK(ac)LWR ddPTM_HeLa_A486_30min_R1 2 TVDGPSGKLWR 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; TVDGPSGK(1)LWR;TVDGPSGK(1)LWR 242.59 5.53E-27 923420000 793160 885190 739430 282770 1068010 837580 935940 937810 775580 886550 FALSE TRUE FALSE 737563.5799 815044.3206 1025757.099 658302.8504 934050.227 734247.8955 701757.9126 724291.1352 842807.8989 664552.1095 1.109865681 1.2264566 1.543531476 0.990596284 1.405533462 1.104876329 1.055986284 1.089893667 1.26823448 1 19.3420228 -6.380697044 23.85655415 1.106420899 1.254968295 0.193937332 0.154281315 21.7127972 4277.706318 0.052772854 0.046541277 4.16E-07 6.380697044 0.148547397 TVDGS(ph)PMMK ddPTM_HeLa_A485_30min_R1 3 TVDGSPMMK 9 0 O75781-2;O75781;A0A087WWY4;A0A087WTK8 O75781-2 PALM Paralemmin-1 1 0 TVDGS(1)PMMK;TVDGS(1)PMMK;TVDGS(1)PMMK ;; 178.1 2.93E-07 749340000 1640400 1380120 737460 2093200 988550 1629760 2268910 1989050 1169340 4227500 TRUE FALSE FALSE 2005301.321 1541513.029 1010277.142 2207546.216 890126.491 1715091.714 1784138.843 1501232.369 1404015.812 3173662.051 0.631857233 0.485720598 0.31833167 0.695583266 0.280472992 0.540414098 0.562170393 0.473028427 0.442396131 1 21.59771708 -10.87424076 2.587038471 1.241255753 0.489577818 0.613587327 0.120872095 30556632.64 18590084 45219542.61 0.029440856 1.34E-11 10.87424076 -0.751677935 TVDGS(ph)PMMK ddPTM_HeLa_A486_30min_R1 3 TVDGSPMMK 9 0 O75781-2;O75781;A0A087WWY4;A0A087WTK8 O75781-2 PALM Paralemmin-1 1 0 TVDGS(1)PMMK;TVDGS(1)PMMK;TVDGS(1)PMMK ;; 169.21 7.09E-06 712400000 833400 751800 542330 256240 961990 1004500 942380 825180 1041650 1595950 TRUE FALSE FALSE 774982.9637 692224.63 752334.7001 596539.6697 841328.244 880575.003 706586.5565 637304.5276 1131941.061 1196313.732 0.647809135 0.57863135 0.628877426 0.498648184 0.70326723 0.73607364 0.590636501 0.532723574 0.946190811 1 20.19016435 -7.809309447 7.036615959 0.982303936 0.616319321 0.81314072 0.068762283 0.095064732 10.69749585 0.067681163 0.017902605 1.55E-08 7.809309447 -0.365984614 TVDSQGPT(ph)PVCT(ph)PTFLER ddPTM_HeLa_A485_30min_R1 1 TVDSQGPTPVCTPTFLER 18 0 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 2 0 TVDSQGPT(1)PVCT(0.976)PT(0.024)FLER 91.589 6.67E-05 0 41406 46057 53937 53254 65928 46793 57435 58751 58174 84420 TRUE FALSE FALSE 50616.62185 51442.96551 73890.54081 56163.13117 59363.97683 49243.00912 45163.54305 44342.22513 69848.9882 63375.64763 0.798676207 0.811715027 1.165913779 0.886194197 0.936700121 0.777002066 0.71263245 0.699672931 1.102142397 1 15.95164096 -6.24345035 23.08529775 0.83041593 0.925634518 0.023522885 0.149973975 844.7570277 1084073.852 0.050203479 0.050070281 5.71E-07 6.24345035 0.095218587 TVDSQGPTPVCT(ph)PTFLER ddPTM_HeLa_A485_30min_R1 1 TVDSQGPTPVCTPTFLER 18 0 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 TVDSQGPT(0.002)PVCT(0.992)PT(0.006)FLER 84.653 0.001159 0 31802 26474 32874 38071 41840 25640 39689 26367 39181 45992 TRUE FALSE FALSE 38876.24518 29569.90401 45035.4606 40150.72233 37674.26269 26982.47075 31209.12092 19900.45191 47044.26731 34527.04082 1.125965164 0.856427406 1.304353328 1.162877599 1.091152378 0.781488078 0.903903728 0.576372937 1.362534008 1 15.07543907 -6.164046779 7.301788603 0.897455294 1.109626759 0.151987513 0.211820866 0.461044837 30.26850356 0.06788987 0.06794126 6.85E-07 6.164046779 0.212171465 TVDSTPLSVHT(ph)PTLR ddPTM_HeLa_A485_30min_R1 1 TVDSTPLSVHTPTLR 15 0 A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25;Q5VT25-2;H0Y6V3 A0A0A0MRJ1 CDC42BPA Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase MRCK alpha 1 0 TVDSTPLSVHT(1)PTLR 147.17 8.99E-08 116760000 139930 185590 195770 106540 252280 121940 188230 144340 176500 217950 TRUE FALSE FALSE 171056.9457 207293.1361 268193.4697 112360.0104 227162.1174 128324.5898 148013.1228 108940.3887 211921.931 163619.0761 1.045458451 1.266925233 1.639133261 0.686717057 1.388359615 0.784288684 0.904620209 0.665817161 1.295215302 1 17.31998143 -5.267209097 24.99819388 0.954922499 1.312147605 0.283689197 0.259412624 587.6481572 2546077.654 0.070741312 0.10819768 5.40E-06 5.267209097 0.357225106 TVEDEDQDS(ph)EEEKDNDSYIK ddPTM_HeLa_A485_30min_R1 4 TVEDEDQDSEEEKDNDSYIK 20 1 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(1)EEEKDNDSYIK ;;; 296.97 3.53E-87 2778380000 1337200 805420 513738 2867370 1112090 1122020 2076750 1497570 861488 3736270 TRUE FALSE FALSE 1634655.527 899606.8628 703791.0646 3024007.163 1001366.415 1180767.232 1633035.397 1130288.609 1034380.74 2804886.65 0.582788444 0.32072842 0.250916045 1.078120987 0.357007801 0.420967896 0.582210834 0.402971225 0.368778089 1 21.41951104 -10.40053341 3.917208684 1.002303801 0.48548213 0.326138312 0.222105027 616391556.4 1169447683 16497182.08 0.05519521 3.98E-11 10.40053341 -0.516821671 TVEDEDQDS(ph)EEEKDNDSYIK ddPTM_HeLa_A486_30min_R1 4 TVEDEDQDSEEEKDNDSYIK 20 1 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(1)EEEKDNDSYIK ;;; 293.83 4.54E-87 3189250000 2286090 2018480 667065 1825440 1418200 2793410 3905660 3275470 1584450 5015770 TRUE FALSE FALSE 2125846.896 1858528.294 925370.4326 4249716.573 1240316.132 2448787.476 2928422.558 2529716.984 1721791.402 3759788.545 0.565416611 0.494317239 0.246122999 1.130307336 0.329889864 0.651309893 0.778879589 0.672834909 0.457948999 1 21.84222009 -14 0.16937853 2.499402518 0.504659026 0.209048255 0.235502475 214.0505892 2.014708155 108.7041431 0.844338795 1.00E-14 14 -1.994743492 TVEDLKNNESQWKDS(ph)PLATR ddPTM_HeLa_A485_30min_R1 1 TVEDLKNNESQWKDSPLATR 20 2 O95155;O95155-4;O95155-2;O95155-3;K7EP75 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 TVEDLKNNESQWKDS(1)PLATR 173.18 4.01E-14 1506200000 901840 783300 452760 1234700 1101600 1066600 1876300 2126600 743480 1918800 TRUE FALSE FALSE 1102451.197 874900.1212 620254.7649 1302148.535 991920.836 1122445.527 1475413.177 1605048.016 892689.6164 1440478.473 0.765336808 0.607367717 0.430589402 0.903969451 0.688605109 0.779217148 1.024252153 1.114246444 0.619717429 1 20.45811667 -6.126873249 1.134818406 0.941897849 0.631569364 0.342601464 0.166069837 0.53352123 1.438288502 0.082321309 0.084218182 7.47E-07 6.126873249 -0.310328485 TVEDLKNNESQWKDS(ph)PLATR ddPTM_HeLa_A486_30min_R1 1 TVEDLKNNESQWKDSPLATR 20 2 O95155;O95155-4;O95155-2;O95155-3;K7EP75 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 TVEDLKNNESQWKDS(0.999)PLAT(0.001)R 160.04 1.40E-13 819220000 978230 752030 311390 571290 758580 926770 1354500 1335900 545150 1538600 TRUE FALSE FALSE 909661.1286 692436.404 431968.5473 1329991.991 663431.8229 812434.5401 1015589.774 1031744.732 592404.0409 1153324.545 0.788729532 0.60038296 0.374542057 1.153181034 0.575234287 0.704428379 0.880575877 0.894583174 0.513649036 1 20.13736711 -14 0.119589609 1.824444606 0.599072337 0.120447105 0.213104101 333.8559124 2.587119159 67.89119746 2.064916325 1.00E-14 14 -1.225372269 TVEVKPGMK(ac)AR ddPTM_HeLa_A486_30min_R1 1 TVEVKPGMKAR 11 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 TVEVKPGMK(1)AR 106.49 0.017332 16658000 16023 14823 10573 5581.4 17542 16638 17544 18669 14827 19792 FALSE TRUE FALSE 14899.87044 13648.3715 14667.14875 12993.78127 15341.71879 14585.37272 13154.30564 14418.47624 16112.2163 14835.95438 1.004308187 0.919952377 0.988621856 0.875830495 1.034090453 0.983109839 0.886650451 0.971860379 1.086024929 1 13.85681012 -7.624041325 6.838546919 1.041554949 0.955020361 0.306757536 0.051483307 0.249088162 14.47378997 0.034183634 0.012623826 2.38E-08 7.624041325 -0.086534587 TVFPGAVPVLPAS(ph)PPPK ddPTM_HeLa_A485_30min_R1 1 TVFPGAVPVLPASPPPK 17 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 TVFPGAVPVLPAS(1)PPPK 115.5 0.00010272 89509000 139480 113430 88824 211640 148090 123070 155510 102390 120150 272480 TRUE FALSE FALSE 170506.8448 126694.6518 121683.6939 223201.3573 133345.6396 129513.7549 122284.0181 77278.69196 144263.0029 204555.7506 0.833547061 0.619364899 0.594868115 1.091151711 0.651879203 0.633146487 0.597802886 0.377787922 0.705250292 1 17.64213457 -4.245207655 22.3421847 0.680012223 0.833547567 0.035871741 0.195979135 2489.711512 3426715.512 0.049489425 1.069974932 5.69E-05 4.245207655 0.153535344 TVFPGAVPVLPAS(ph)PPPK ddPTM_HeLa_A486_30min_R1 2 TVFPGAVPVLPASPPPK 17 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 TVFPGAVPVLPAS(1)PPPK;TVFPGAVPVLPAS(1)PPPK ; 134.44 8.24E-06 215516000 327800 443150 222050 136807 340080 440820 453680 386990 370230 507170 TRUE FALSE FALSE 304822.9128 408033.1801 308033.7067 318493.6098 297423.9953 386436.1103 340164.4655 298880.8249 402321.8345 380171.3309 0.80180405 1.073287613 0.8102497 0.837763356 0.782341989 1.016478832 0.894766222 0.786174024 1.058264529 1 18.53629022 -6.263663353 24.99945167 0.934249437 0.868757824 0.146456803 0.103979136 564.5595581 6346128.073 0.035956348 0.033255617 5.45E-07 6.263663353 -0.065491613 TVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_HeLa_A485_30min_R1 2 TVFPGAVPVLPASPPPKDSLR 21 1 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 TVFPGAVPVLPAS(1)PPPKDSLR;TVFPGAVPVLPAS(1)PPPKDSLR ; 191.18 7.61E-20 5112000000 1046330 1016340 790900 1135640 1388330 1183690 1648120 1689560 932800 1535430 TRUE FALSE FALSE 1279082.499 1135192.122 1083486.822 1197677.138 1250102.99 1245666.178 1295985.698 1275192.761 1120004.404 1152675.558 1.109663937 0.984832301 0.939975533 1.039040976 1.084522858 1.080673715 1.124328254 1.106289408 0.971656244 1 20.13655507 -5.520901811 17.73198175 1.069876255 1.005605377 0.113124822 0.058922736 3.039389639 27255.32799 0.017351213 0.023021697 3.01E-06 5.520901811 -0.064270878 TVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_HeLa_A486_30min_R1 2 TVFPGAVPVLPASPPPKDSLR 21 1 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 TVFPGAVPVLPAS(1)PPPKDSLR;TVFPGAVPVLPAS(1)PPPKDSLR ; 232.7 6.95E-37 7138900000 2114020 2213600 1535650 930310 2630100 2441600 2926200 2722300 2085040 2826100 TRUE FALSE FALSE 1965838.115 2038186.274 2130294.806 2165808.695 2300208.333 2140380.216 2194033.81 2102491.717 2265772.946 2118426.165 0.927971032 0.962122876 1.005602575 1.022366855 1.085810009 1.010363378 1.035690479 0.992478167 1.069554834 1 21.01456142 -4.706091963 1.731883735 1.032092193 0.925721259 0.616771051 0.027364765 0.286415599 1.488925807 0.007687192 0.038267375 1.97E-05 4.706091963 -0.106370933 TVFS(ph)PTLPAAR ddPTM_HeLa_A485_30min_R1 8 TVFSPTLPAAR 11 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 TVFS(0.998)PT(0.002)LPAAR;TVFS(0.99)PT(0.009)LPAAR;TVFS(0.997)PT(0.003)LPAAR;TVFS(0.998)PT(0.002)LPAAR;TVFS(1)PTLPAAR;TVFS(1)PTLPAAR;TVFS(1)PTLPAAR;TVFS(1)PTLPAAR ;;;;;;; 273.75 1.17E-34 10182740000 3970630 4918880 4989600 4277080 6434360 4603690 5860240 5666370 4471720 5756770 TRUE FALSE FALSE 4853882.945 5494100.227 6835460.675 4510726.05 5793732.526 4844732.09 4608151.85 4276683.873 5369153.187 4321713.185 1.123138611 1.271278309 1.581655326 1.043735634 1.340610142 1.121021198 1.066278962 0.98958068 1.242366848 1 22.0431719 -6.402878078 4.589034486 1.075840941 1.276079711 0.293466236 0.147079056 0.302274009 10.01171666 0.052983333 0.046089898 3.95E-07 6.402878078 0.20023877 TVFS(ph)PTLPAAR ddPTM_HeLa_A486_30min_R1 8 TVFSPTLPAAR 11 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 TVFS(0.995)PT(0.005)LPAAR;T(0.035)VFS(0.92)PT(0.045)LPAAR;TVFS(0.996)PT(0.004)LPAAR;TVFS(0.998)PT(0.001)LPAAR;TVFS(0.997)PT(0.003)LPAAR;TVFS(1)PTLPAAR;TVFS(1)PTLPAAR;TVFS(1)PTLPAAR ;;;;;;; 228.74 2.89E-18 8805093000 4883854 5134712 4221353 1662410 5859322 4457211 5238670 5195163 4343802 5246264 TRUE FALSE FALSE 4541521.055 4727818.721 5855973.933 3870174.494 5124391.199 3907325.624 3927899.357 4012337.795 4720326.255 3932565.347 1.154849482 1.202222545 1.48909768 0.984134821 1.303065746 0.993581868 0.9988135 1.020285091 1.200317309 1 21.90703931 -6.266943845 24.98599224 1.041130739 1.226420327 0.331497023 0.130691391 553.3435062 2511740.824 0.044772513 0.04060127 5.41E-07 6.266943845 0.185289588 TVGSTST(ph)PR ddPTM_HeLa_A485_30min_R1 1 TVGSTSTPR 9 0 B4DZM6;Q99640-4;Q99640-3;Q99640 B4DZM6 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase 1 0 TVGS(0.004)T(0.004)S(0.035)T(0.957)PR 100.58 0.0088826 309720000 551430 652200 401270 536140 556240 558010 638410 854630 491610 1043800 TRUE FALSE FALSE 674093.7011 728469.1166 549716.4712 565427.9706 500858.7925 587226.5408 502008.4882 645030.6525 590271.6177 783599.8697 0.860252442 0.929644254 0.701527007 0.721577418 0.639176717 0.749395914 0.640643915 0.823163297 0.753281924 1 19.57975763 -9.909577873 11.14674689 0.999999913 0.754738741 0.407565609 0.087601964 0 0 0.091167154 0.022111283 1.23E-10 9.909577873 -0.245261172 TVHPNS(ph)PGIPYR ddPTM_HeLa_A485_30min_R1 2 TVHPNSPGIPYR 12 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JNI4;C9J102 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 TVHPNS(1)PGIPYR;TVHPNS(1)PGIPYR ; 132.44 1.73E-05 461040000 535430 583890 568010 435050 776270 549990 648760 667040 502140 663220 TRUE FALSE FALSE 654534.5563 652170.8563 778140.5359 458815.6799 698981.8332 578786.626 510147.1261 503447.3941 602914.8921 497891.4597 1.314612941 1.309865521 1.562871828 0.921517473 1.403883958 1.162475505 1.024615137 1.011158927 1.210936401 1 18.92547174 -5.91592523 0.665892594 1.051098523 1.377758422 0.330446371 0.160208796 0.963500356 0.939607232 0.108368603 0.166702229 1.21E-06 5.91592523 0.326659899 TVHPNS(ph)PGIPYR ddPTM_HeLa_A486_30min_R1 3 TVHPNSPGIPYR 12 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JNI4;C9J102 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 TVHPNS(1)PGIPYR;TVHPNS(1)PGIPYR;T(0.002)VHPNS(0.998)PGIPYR ;; 112.24 0.00026653 683120000 697710 708700 552180 217649 847720 659620 750750 741860 587770 661280 TRUE FALSE FALSE 648804.132 652540.031 765998.8839 506697.8714 741391.0529 578242.7909 562904.4094 572954.6727 638718.3768 495691.1838 1.308887778 1.316424525 1.545314722 1.022204727 1.495671251 1.166538381 1.135594959 1.15587021 1.288540926 1 18.91908207 -8.392035092 0.091639988 0.63815013 1.652740911 0.303647204 0.144490968 30.1179094 1.341277197 8.454860317 5.720369905 4.05E-09 8.392035092 1.014590781 TVHRDS(ph)EEEDDYLFDDPLPIPLR ddPTM_HeLa_A486_30min_R1 1 TVHRDSEEEDDYLFDDPLPIPLR 23 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 0 T(0.194)VHRDS(0.806)EEEDDYLFDDPLPIPLR 114.68 6.30E-05 39059000 29001 28631 19862 14507 39188 30938 33416 27599 22818 26461 TRUE FALSE FALSE 26968.17966 26362.17529 27553.09832 33773.02914 34272.67563 27121.18411 25054.96336 21315.31018 24795.88261 19834.99337 1.359626351 1.329074066 1.38911558 1.702699291 1.727889442 1.367340216 1.263169737 1.074631576 1.250107936 1 14.27576029 -6.804896123 2.427504238 1.127592873 1.498076619 0.59335535 0.14047537 0.235054031 2.825568201 0.07545918 0.048475643 1.57E-07 6.804896123 0.370483746 TVIDKCS(ph)PPLEFLDDSDSHLEIQK ddPTM_HeLa_A485_30min_R1 2 TVIDKCSPPLEFLDDSDSHLEIQK 24 1 Q93075;H7C1W4 Q93075 TATDN2 Putative deoxyribonuclease TATDN2 1 0 TVIDKCS(1)PPLEFLDDSDSHLEIQK;T(0.001)VIDKCS(0.999)PPLEFLDDSDSHLEIQK ; 247.62 1.69E-49 273808000 156419 105213 82054 216844 193402 145273 250914 221821 129154 313070 TRUE FALSE FALSE 191213.8669 117516.7451 112409.1892 228689.6386 174146.2178 152879.2696 197304.1741 167419.0519 155074.0231 235027.4106 0.813581133 0.500012934 0.478281188 0.973033903 0.740961309 0.650474212 0.839494311 0.71233841 0.659812499 1 17.8424695 -14 0.172886661 2.122625674 0.64124077 0.269279071 0.142634232 187.6660749 1.780488473 72.70874397 0.513727356 1.00E-14 14 -1.481384904 TVIDKCS(ph)PPLEFLDDSDSHLEIQK ddPTM_HeLa_A486_30min_R1 2 TVIDKCSPPLEFLDDSDSHLEIQK 24 1 Q93075;H7C1W4 Q93075 TATDN2 Putative deoxyribonuclease TATDN2 1 0 TVIDKCS(1)PPLEFLDDSDSHLEIQK;T(0.004)VIDKCS(0.996)PPLEFLDDSDSHLEIQK ; 207.9 5.13E-29 275190000 199407 212486 98227 85957 187725 257230 348880 322310 180008 316750 TRUE FALSE FALSE 185429.599 195647.8355 136263.125 200112.24 164178.78 225495.5779 261586.5339 248927.049 195611.2384 237433.7383 0.780974096 0.824010256 0.57389959 0.842812995 0.691471992 0.949720034 1.101724362 1.048406392 0.82385612 1 17.85716542 -6.359818515 4.829178452 1.00044524 0.743754863 0.610849056 0.096810417 0.152852125 5.783119244 0.034570497 0.030339932 4.37E-07 6.359818515 -0.256690377 TVIIEQSWGS(ph)PK ddPTM_HeLa_A485_30min_R1 5 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;P10809-2;C9JL19;C9JCQ4;C9JL25 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK;TVIIEQS(0.002)WGS(0.998)PK;TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK ;;;; 242.91 7.04E-28 4164880000 2939340 2533930 1509480 4656050 3224800 2729500 4397510 4244210 1997420 6464590 TRUE FALSE FALSE 3593186.042 2830251.071 2067899.467 4910398.222 2903727.589 2872412.399 3457946.064 3203310.843 2398283.873 4853086.685 0.740391894 0.583185765 0.426099841 1.011809296 0.598325927 0.591873293 0.712525098 0.660056383 0.494177011 1 22.2104712 -10.06542481 4.502652048 1.000020664 0.648212033 0.330354721 0.150972932 99807446.83 0.930541117 22545.49659 0.035836574 8.60E-11 10.06542481 -0.35180863 TVIIEQSWGS(ph)PK ddPTM_HeLa_A486_30min_R1 5 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;P10809-2;C9JL19;C9JCQ4;C9JL25 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK;TVIIEQSWGS(1)PK ;;;; 242.41 7.40E-28 4757480000 3255950 3093250 1541611 2213810 2800120 3575200 4610020 4170260 2604590 5835110 TRUE FALSE FALSE 3027724.719 2848129.605 2138564.065 5153861.56 2448902.84 3134128.174 3456544.236 3220782.834 2830357.958 4373960.476 0.692215839 0.651155771 0.488930816 1.178305471 0.559882252 0.716542408 0.790255023 0.736353895 0.647092715 1 22.06050875 -11.3039713 2.144336847 2.253040982 0.720694945 0.189984381 0.174684814 4991663.144 676910.2849 30311447.69 0.043333375 4.97E-12 11.3039713 -1.532346038 TVIIEQSWGSPK ddPTM_HeLa_A485_30min_R1 2 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;P10809-2;C9JL19;C9JCQ4;C9JL25 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 292.33 2.91E-62 125323000 149710 175424 115592 174593 191615 199934 227198 260960 152698 298160 FALSE FALSE TRUE 183012.473 195938.3108 158354.291 184130.5735 172537.1378 210402.2351 178655.2913 196959.1508 183343.088 223834.1992 0.81762516 0.875372537 0.70746245 0.822620378 0.770825631 0.939991457 0.798159048 0.879933234 0.819102213 1 17.77207095 -6.242425524 24.80481301 0.874353141 0.799287434 0.295066498 0.067004785 1106.553302 1443571.353 0.021202821 0.021168056 5.72E-07 6.242425524 -0.075065706 TVIIEQSWGSPK ddPTM_HeLa_A486_30min_R1 2 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;P10809-2;C9JL19;C9JCQ4;C9JL25 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 302.33 4.85E-63 84065000 131667 141943 82387 44812 146485 132672 152646 152533 132369 163710 FALSE FALSE TRUE 122437.8232 130694.9197 114289.4528 104324.6007 128111.4854 116304.2776 114452.3563 117804.5657 143842.8515 122715.9504 0.997733569 1.065019822 0.931333314 0.850130731 1.043967674 0.947751919 0.932660798 0.959977617 1.172161003 1 16.90496325 -7.733341224 24.99805816 1.086080521 0.965219646 0.325102874 0.069155347 211.1329064 187839.161 0.04672841 0.017653756 1.85E-08 7.733341224 -0.120860875 TVIRLPS(ph)GSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A485_30min_R1 1 TVIRLPSGSGAASPTGSAVDIR 22 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 T(0.116)VIRLPS(0.719)GS(0.166)GAAS(0.859)PT(0.082)GS(0.058)AVDIR 56.474 0.030119 526710000 57145 76762 43254 65676 61271 101640 106140 170410 60253 79167 TRUE FALSE FALSE 69856.7081 85738.64816 59255.45455 69263.71358 55170.6441 106961.7132 83462.32192 128616.6803 72345.22443 59432.12386 1.175403192 1.442631402 0.997027377 1.165425515 0.928296694 1.799728939 1.404330125 2.164093624 1.217274762 1 15.85895532 -6.261964537 24.99998068 1.582794131 1.151746491 0.239302187 0.323929211 60.03368127 2857834.743 0.104939839 0.098207598 5.47E-07 6.261964537 -0.43104764 TVIRLPSGS(ph)GAAS(ph)PTGSAVDIR ddPTM_HeLa_A486_30min_R1 1 TVIRLPSGSGAASPTGSAVDIR 22 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 T(0.018)VIRLPS(0.062)GS(0.918)GAAS(0.89)PT(0.085)GS(0.027)AVDIR 50.865 0.002821 0 177470 123040 122740 69289 239820 103450 167480 187670 86510 185120 TRUE FALSE FALSE 165030.2695 113289.8623 170268.2151 161308.2937 209739.5394 90687.3908 125574.7326 144941.6378 94008.75645 138764.7471 1.189280944 0.816416739 1.227027892 1.162458745 1.511475672 0.653533356 0.904946935 1.0445134 0.677468582 1 17.08228157 -6.279048983 24.99885863 0.861927967 1.162549112 0.409765764 0.194456971 945.3979063 1342096.992 0.069508687 0.061431437 5.26E-07 6.279048983 0.300621145 TVIRLPSGSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A485_30min_R1 6 TVIRLPSGSGAASPTGSAVDIR 22 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 TVIRLPSGSGAAS(0.991)PT(0.009)GSAVDIR;TVIRLPSGSGAAS(1)PTGSAVDIR;TVIRLPSGS(0.001)GAAS(0.997)PT(0.002)GSAVDIR;TVIRLPSGSGAAS(0.964)PT(0.036)GSAVDIR;TVIRLPSGSGAAS(1)PTGSAVDIR;TVIRLPSGSGAAS(0.995)PT(0.005)GSAVDIR ;;;;; 279.67 2.17E-73 21677460000 3648460 10835400 5580180 1908790 7416410 9501040 10840500 19954000 4479750 3401810 TRUE FALSE FALSE 4460047.34 12102505.77 7644520.793 2013062.364 6678006.18 9998499.763 8524338.616 15060250.21 5378794.734 2553801.373 1.746434702 4.739016082 2.993388943 0.788261133 2.61492779 3.91514386 3.337901964 5.897189333 2.106191496 1 21.28421489 -6.246483411 22.43098775 3.562773151 2.620374802 0.027160747 1.518614163 579.3413071 868894.8562 0.49870564 0.496020922 5.67E-07 6.246483411 -0.942398349 TVIRLPSGSGAAS(ph)PTGSAVDIR ddPTM_HeLa_A486_30min_R1 5 TVIRLPSGSGAASPTGSAVDIR 22 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 TVIRLPSGSGAAS(0.879)PT(0.121)GS(0.001)AVDIR;TVIRLPSGSGAAS(0.93)PT(0.048)GS(0.022)AVDIR;TVIRLPS(0.005)GS(0.005)GAAS(0.975)PT(0.015)GS(0.002)AVDIR;TVIRLPS(0.027)GS(0.014)GAAS(0.552)PT(0.399)GS(0.008)AVDIR;TVIRLPSGSGAAS(0.998)PT(0.002)GSAVDIR ;;;; 220.35 3.42E-36 6788340000 4856543 2968629 2698282 1522409 5575713 2176921 3912664 4406339 2065710 5099661 TRUE FALSE FALSE 4516124.415 2733384.026 3743129.053 3544245.09 4876355.084 1908354.62 2933674.083 3403111.799 2244767.406 3822672.692 1.181404943 0.71504527 0.979191616 0.927164153 1.275640233 0.499219989 0.767440563 0.890244097 0.58722459 1 21.86615025 -6.26702703 24.99967095 0.743129539 0.992041092 0.32155519 0.192198441 609.7937252 2728266.004 0.064956932 0.058887328 5.41E-07 6.26702703 0.248911553 TVIT(ph)FCFT(ph)PK ddPTM_HeLa_A486_30min_R1 1 TVITFCFTPK 10 0 Q6ZTR5-2;Q6ZTR5-1;Q6ZTR5-6;Q6ZTR5 Q6ZTR5-2 CXorf22 Uncharacterized protein CXorf22 2 0 T(0.383)VIT(0.619)FCFT(0.999)PK 53.967 0.026297 1193200000 693680 840390 634660 68432 678330 629230 459200 532940 785180 232290 TRUE FALSE FALSE 645056.6142 773794.4358 880417.3488 159313.1544 593247.5262 551602.0001 344303.3031 411601.196 853240.0346 174123.072 3.704601616 4.443951205 5.056293451 0.91494569 3.407058693 3.167885758 1.977356011 2.363852137 4.900212388 1 17.40974785 -5.237381769 24.97586742 2.629586654 4.405849074 0.357542297 1.142708042 888.0306479 921924.7792 0.300432286 0.520027231 5.79E-06 5.237381769 1.77626242 TVKEEAEKPER ddPTM_HeLa_A485_30min_R1 1 TVKEEAEKPER 11 2 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 52.344 0.036897 52637000 33390 38305 33391 49357 52639 52274 82475 85703 40006 80377 FALSE FALSE TRUE 40817.49031 42784.43654 45743.72042 52053.24793 47398.07633 55010.98581 64853.54249 64684.20487 48034.83724 60340.49313 0.676452713 0.709050164 0.758093248 0.862658643 0.785510258 0.911676106 1.074793047 1.07198668 0.796063054 1 15.88083887 -5.759272858 0.82542536 0.991444578 0.687270231 0.636212198 0.083058303 0.433333985 0.639044377 0.046269619 0.078107489 1.74E-06 5.759272858 -0.304174347 TVKPVENKDDDDSIADFLNS(ph)DEEEDRVSLQNLK ddPTM_HeLa_A485_30min_R1 3 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLK 33 3 Q15649-2;Q15649 Q15649-2 ZNHIT3 Zinc finger HIT domain-containing protein 3 1 0 TVKPVENKDDDDSIADFLNS(1)DEEEDRVSLQNLK;TVKPVENKDDDDSIADFLNS(1)DEEEDRVSLQNLK;TVKPVENKDDDDSIADFLNS(1)DEEEDRVSLQNLK ;; 243.77 5.30E-50 3713610000 264662 168583 94585 557980 244801 277660 539040 471800 188302 704090 TRUE FALSE FALSE 323535.1488 188297.3154 129575.9275 588461.0345 220427.7529 292197.8483 423869.7004 356090.3102 226092.4842 528573.3208 0.612091334 0.356236889 0.245142769 1.113300674 0.417023986 0.552804761 0.801912779 0.673681959 0.427741006 1 19.01174408 -14 0.13363266 2.321608825 0.425524274 0.216799803 0.236896883 228.2852238 1.902039442 81.80253973 1.685758743 1.00E-14 14 -1.896084551 TVKPVENKDDDDSIADFLNS(ph)DEEEDRVSLQNLK ddPTM_HeLa_A486_30min_R1 2 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLK 33 3 Q15649-2;Q15649 Q15649-2 ZNHIT3 Zinc finger HIT domain-containing protein 3 1 0 TVKPVENKDDDDSIADFLNS(1)DEEEDRVSLQNLK;TVKPVENKDDDDSIADFLNS(1)DEEEDRVSLQNLK ; 361.78 7.22E-149 2007972000 570120 531550 177165 505250 419890 788840 1131300 1018090 437436 1307230 TRUE FALSE FALSE 530157.5321 489428.0421 245768.0326 1176247.534 367223.4809 691520.9411 848236.7743 786293.1317 475353.3047 979891.0994 0.541037195 0.499471872 0.250811578 1.200385976 0.374759482 0.705712034 0.865643922 0.802429099 0.485108299 1 19.9022619 -4.942475457 0.1076108 1.14688483 4.94E-19 0.184281272 0.253856492 69.07824355 1.557713556 4.257082973 13.74751792 1.14E-05 4.942475457 -1.14688483 TVKVCGS(ph)KSSVR ddPTM_HeLa_A485_30min_R1 1 TVKVCGSKSSVR 12 2 Q9H9A5-6 Q9H9A5-6 1 0 T(0.124)VKVCGS(0.292)KS(0.292)S(0.292)VR 40.552 0.035526 859830000 31634 166240 210080 12301 103330 130550 56773 123740 119870 22110 TRUE FALSE FALSE 38670.87416 185680.3219 287797.3342 12972.97248 93042.10239 137385.3961 44642.98476 93392.57098 143926.8095 16598.3839 2.329797551 11.18665064 17.33887683 0.781580457 5.60549165 8.277034495 2.689598277 5.626606272 8.671133908 1 14.01875516 -5.281201897 24.96457538 4.964711406 10.37526442 0.269739884 4.217004253 1078.454472 1362331.94 1.191401915 1.769837537 5.23E-06 5.281201897 5.410553019 TVLEGST(ph)ASTSPADHSALPNQSLTVR ddPTM_HeLa_A486_30min_R1 1 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TVLEGS(0.051)T(0.269)AS(0.234)T(0.269)S(0.178)PADHSALPNQSLTVR 103.68 0.00098534 279650000 53308 64641 50856 15655 85219 66867 67712 58577 51770 67400 TRUE FALSE FALSE 49571.38448 59518.61174 70548.80517 36445.63116 74530.03838 58617.62939 50769.74142 45240.29583 56257.46528 50522.6013 0.98117245 1.17805913 1.396381092 0.721372816 1.475182126 1.160225877 1.004891674 0.895446685 1.113510861 1 15.6246413 -6.771097087 7.193238709 0.994052564 1.15966913 0.114727287 0.20099133 0.298873137 80.76975301 0.079852502 0.056400291 1.69E-07 6.771097087 0.165616566 TVLEGSTAST(ph)SPADHSALPNQSLTVR ddPTM_HeLa_A485_30min_R1 2 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TVLEGS(0.001)T(0.01)AS(0.092)T(0.848)S(0.049)PADHSALPNQSLTVR;T(0.002)VLEGS(0.12)T(0.12)AS(0.12)T(0.552)S(0.088)PADHSALPNQSLTVR ; 208.86 1.70E-28 831770000 158761 224489 215299 170517 246802 199750 238048 256674 189924 214151 TRUE FALSE FALSE 194076.8367 250741.0358 294947.0594 179831.9119 222229.5263 210208.6011 187187.1001 193724.2991 228040.0047 160767.0969 1.20719252 1.559653938 1.834623286 1.118586548 1.382307267 1.30753497 1.16433713 1.204999672 1.418449479 1 17.29461264 -5.28506178 24.99896307 1.243659342 1.536406406 0.367834034 0.182896209 835.426689 884107.9661 0.051098067 0.075837981 5.19E-06 5.28506178 0.292747064 TVLEGSTAST(ph)SPADHSALPNQSLTVR ddPTM_HeLa_A486_30min_R1 2 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TVLEGS(0.002)T(0.008)AS(0.033)T(0.526)S(0.432)PADHSALPNQSLTVR;TVLEGS(0.001)T(0.007)AS(0.022)T(0.541)S(0.428)PADHSALPNQSLTVR ; 173.96 4.35E-14 749920000 231050 239520 198651 46497 256020 193491 233692 227760 200703 234620 TRUE FALSE FALSE 214854.5881 220539.5629 275573.9873 108247.3658 223907.5843 169620.0477 175219.7899 175904.02 218100.0976 175869.6249 1.221669679 1.253994617 1.566922017 0.615497792 1.273145289 0.964464715 0.996305018 1.000195571 1.240123744 1 17.42414681 -5.239596235 24.99865871 1.020971068 1.338175314 0.398720699 0.188065487 836.5609558 957411.4497 0.04859337 0.08407358 5.76E-06 5.239596235 0.317204245 TVLEGSTASTS(ph)PADHSALPNQSLTVR ddPTM_HeLa_A485_30min_R1 1 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TVLEGS(0.001)T(0.004)AS(0.017)T(0.284)S(0.693)PADHSALPNQSLTVR 117.23 0.00014135 561740000 107600 147980 175560 156930 182240 142470 235430 178590 182730 167720 TRUE FALSE FALSE 131535.2488 165284.9737 240506.9497 165502.6885 164095.5457 149929.5089 185128.4572 134790.5225 219402.2349 125910.4907 1.044672673 1.31271805 1.910142264 1.314447173 1.303271434 1.190762645 1.470317971 1.070526545 1.742525454 1 16.94203897 -5.47950498 24.99942039 1.303705607 1.44499208 0.037985282 0.278173534 1615.557559 931160.8523 0.077128112 0.114390243 3.32E-06 5.47950498 0.141286473 TVLIMELINNVAK ddPTM_HeLa_A485_30min_R1 2 TVLIMELINNVAK 13 0 P06576;H0YH81;F8W079;H0YI37;F8W0P7 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ; ; 265.61 4.22E-40 18871900 27948 26231 19959.6 31604 30914 35162 43570 47074 21404.4 50485 FALSE FALSE TRUE 34164.93618 29298.48727 27343.48663 33330.44649 27836.09361 37003.02795 34260.91357 35529.02769 25700.06675 37900.01861 0.901449061 0.773046778 0.721463673 0.879430874 0.734461212 0.976332712 0.903981444 0.937440904 0.678101692 1 15.20991094 -6.255908412 24.96984029 0.895562037 0.800194232 0.199702236 0.097124779 783.6396493 3537785.401 0.031648098 0.030810046 5.55E-07 6.255908412 -0.095367806 TVLIMELINNVAK ddPTM_HeLa_A486_30min_R1 2 TVLIMELINNVAK 13 0 P06576;H0YH81;F8W079;H0YI37;F8W0P7 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ; ; 296.14 3.09E-82 10126000 31751 37385 25345 16608.6 41624 37151 46259 43017 39275 45564 FALSE FALSE TRUE 29525.41886 34422.47645 35159.26276 38665.66015 36403.12979 32567.68734 34684.50892 33222.96815 42679.38862 34154.47783 0.864466996 1.007846661 1.029418835 1.132081724 1.065837691 0.953540778 1.015518641 0.972726573 1.249598628 1 15.05978712 -4.230019474 2.107259161 1.049829118 0.804028844 0.325511802 0.081322047 0.933345159 4.321091299 0.021481995 0.448570897 5.89E-05 4.230019474 -0.245800274 TVLPTVPES(ph)PEEEVK ddPTM_HeLa_A486_30min_R1 2 TVLPTVPESPEEEVK 15 0 O75152;E9PQ61;E9PBY7;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 TVLPTVPES(1)PEEEVK;TVLPTVPES(1)PEEEVK ; 337.49 1.33E-90 341550000 748960 698940 316450 310880 553800 686300 889800 832870 524360 967710 TRUE FALSE FALSE 696461.7716 643553.4489 438987.9148 723744.351 484337.24 601631.2838 667162.6287 643243.6824 569811.947 725389.1173 0.960121616 0.887183766 0.605175766 0.997732574 0.667693006 0.829391108 0.919730684 0.886756731 0.785525911 1 19.46839558 -10.72525343 6.798987121 1.002227462 0.835635209 0.146417835 0.1174654 0.00387372 0.000156537 0.111085507 0.026614193 1.88E-11 10.72525343 -0.166592253 TVLS(ph)LFDEEEDKMEDQNIIQAPQK ddPTM_HeLa_A485_30min_R1 2 TVLSLFDEEEDKMEDQNIIQAPQK 24 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;B1AP61;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 T(0.018)VLS(0.982)LFDEEEDKMEDQNIIQAPQK;T(0.02)VLS(0.98)LFDEEEDKMEDQNIIQAPQK ; 120.6 2.69E-05 140902000 28186 15658.5 13136 52352 33055 25481.3 51468 42053 25233.7 99512 TRUE FALSE FALSE 34455.87846 17489.62536 17995.55303 55211.8572 29763.92814 26815.46147 40471.44135 31739.43581 30297.87213 74705.48978 0.461222844 0.234114326 0.240886621 0.73906024 0.39841688 0.358949008 0.54174655 0.424860822 0.405564199 1 16.18892664 -14 0.302252149 5.860238982 0.393082457 0.61321683 0.137555232 191.0120969 1.763442366 588.7999404 0.141724618 1.00E-14 14 -5.467156525 TVLS(ph)LFDEEEDKMEDQNIIQAPQK ddPTM_HeLa_A486_30min_R1 1 TVLSLFDEEEDKMEDQNIIQAPQK 24 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;B1AP61;Q641Q2;E7ESD2;Q641Q2-2;F8W7U3;A0A087WYF6 A0A0A0MR88;Q641Q2 FAM21C;FAM21A WASH complex subunit FAM21C;WASH complex subunit FAM21A 1 0 TVLS(1)LFDEEEDKMEDQNIIQAPQK 257.07 1.49E-61 107910000 70168 54837 25364 40019 46273 70712 92245 83874 49861 131140 TRUE FALSE FALSE 65249.58555 50491.51641 35185.62007 93166.25445 40469.00886 61988.27239 69164.32533 64777.72116 54182.99163 98301.69042 0.663768703 0.513638333 0.357935046 0.947758416 0.411681719 0.63059213 0.703592431 0.658968537 0.551190843 1 16.58492861 -14 0.256725311 3.49366376 0.571630986 0.36428809 0.156396555 205.7586976 2.03099524 270.1629277 0.208662015 1.00E-14 14 -2.922032774 TVLSSAR ddPTM_HeLa_A485_30min_R1 2 TVLSSAR 7 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 0 0 ; ; 144.29 0.0035076 378880000 380500 360190 347960 203943 448010 201563 150286 145197 132530 111611 FALSE FALSE TRUE 465140.9123 402311.0873 476684.8838 215083.8897 403404.5513 212116.527 118176.1684 109587.2081 159127.5554 83788.43175 5.55137389 4.801511126 5.689149133 2.566987891 4.814561425 2.531572946 1.410411508 1.307903798 1.899159013 1 16.35446345 -6.08596894 0.652812837 1.069228117 5.53305499 0.800684229 0.786566611 0.337347957 0.318521252 0.569949001 0.728659014 8.20E-07 6.08596894 4.463826874 up TVLSSAR ddPTM_HeLa_A486_30min_R1 1 TVLSSAR 7 0 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 0 0 128.75 0.0073165 34372000 40445 30252 29818 11599 34646 18925 20958 13462 12705 10574 FALSE FALSE TRUE 37610.01436 27854.72134 41364.32815 27003.05818 30300.37562 16590.22592 15714.08673 10396.99647 13806.27963 7926.201575 4.745023704 3.514258511 5.218682336 3.406809419 3.822811637 2.093086551 1.98254947 1.311724964 1.741853207 1 12.95241394 -6.285102908 1.097178919 1.356910546 4.38341405 0.859743628 0.519342164 0.165017261 0.413406272 0.263429378 0.232597331 5.19E-07 6.285102908 3.026503504 up TVMDGGLES(ph)DGPNMTENGLEDESRPQR ddPTM_HeLa_A485_30min_R1 4 TVMDGGLESDGPNMTENGLEDESRPQR 27 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TVMDGGLES(1)DGPNMTENGLEDESRPQR;TVMDGGLES(1)DGPNMTENGLEDESRPQR;TVMDGGLES(1)DGPNMTENGLEDESRPQR;TVMDGGLES(1)DGPNMTENGLEDESRPQR ;;; 240.64 4.19E-50 2894670000 878780 859530 972200 1059700 1297840 840540 1078800 822510 966170 1320510 TRUE FALSE FALSE 1074261.579 960044.5566 1331857.237 1117588.728 1168622.493 884549.3747 848305.567 620788.1329 1160071.457 991331.1592 1.083655617 0.968439807 1.343503858 1.127361646 1.178841684 0.892284447 0.8557237 0.626216706 1.170215872 1 19.91900755 -6.268567879 22.59998224 0.882203844 1.141372955 0.353115709 0.154548824 154.4213833 489569.8566 0.052976763 0.047826011 5.39E-07 6.268567879 0.259169111 TVMDGGLES(ph)DGPNMTENGLEDESRPQR ddPTM_HeLa_A486_30min_R1 1 TVMDGGLESDGPNMTENGLEDESRPQR 27 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TVMDGGLES(1)DGPNMTENGLEDESRPQR 188.26 1.09E-20 841640000 227750 260500 226740 69996 254480 263720 282700 231710 224960 244900 TRUE FALSE FALSE 211785.9011 239857.0313 314539.8003 162954.2254 222560.7455 231184.9077 211965.4699 178954.6912 244459.7139 183575.446 1.153672268 1.306585584 1.713408886 0.887668961 1.212366634 1.259345478 1.154650442 0.974829124 1.331658015 1 17.48601358 -5.27435484 24.99916014 1.127614501 1.382758612 0.320824656 0.182130709 949.1200461 1837114.572 0.050866589 0.075971772 5.32E-06 5.27435484 0.255144111 TVMDGGLESDGPNMT(ph)ENGLEDESRPQRR ddPTM_HeLa_A485_30min_R1 1 TVMDGGLESDGPNMTENGLEDESRPQRR 28 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TVMDGGLES(0.112)DGPNMT(0.88)ENGLEDES(0.008)RPQRR 91.942 0.011299 228630000 76932 140260 95056 53648 129640 123660 152040 168010 84308 87439 TRUE FALSE FALSE 94045.25799 156662.1869 130221.17 56578.6544 116732.5864 130134.6464 119555.4119 126805.2841 101227.8423 65642.0665 1.432698009 2.38661266 1.98380668 0.861926771 1.778319798 1.982488568 1.821323099 1.931768618 1.542118457 1 16.00233304 -8.070164809 5.125561804 1.000099183 1.777174669 0.275989974 0.379320012 0.556415603 36.77088429 0.377380711 0.098280075 8.51E-09 8.070164809 0.777075486 TVNCLLVGAIAIPHCVLK ddPTM_HeLa_A485_30min_R1 1 TVNCLLVGAIAIPHCVLK 18 0 Q5SY16 Q5SY16 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 0 0 99.021 0.00026905 7940100 13904 14883 11510 16356 20157 14172 22010 23261 11340 23114 FALSE FALSE TRUE 16996.89683 16623.43739 15768.02797 17249.48686 18150.0983 14914.02401 17307.38369 17556.20328 13615.83398 17352.10518 0.97952938 0.958006951 0.908709797 0.994086117 1.04598826 0.859493638 0.997422705 1.011762152 0.784679083 1 14.08282308 -7.718596802 24.9999947 0.892336279 0.967623468 0.164057063 0.069466736 211.1475343 123211.361 0.044547693 0.016837179 1.91E-08 7.718596802 0.075287189 TVNELAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 TVNELASPR 9 0 P14616 P14616 INSRR Insulin receptor-related protein;Insulin receptor-related protein alpha chain;Insulin receptor-related protein beta chain 1 0 T(0.1)VNELAS(0.9)PR 69.979 0.0067574 0 51115 172870 222570 18231 146740 126630 73093 100030 153490 28124 TRUE FALSE FALSE 62485.35541 193085.6427 304907.9049 19226.91337 132130.0504 133260.151 57476.08344 75497.48566 184294.0351 21113.20438 2.959539171 9.145255226 14.44157407 0.910658232 6.25817133 6.311697105 2.722281393 3.575842126 8.728851943 1 14.36585793 -5.278678018 24.99868963 4.432937681 8.878437111 0.272913943 3.452848578 1091.226096 1582443.947 0.967912181 1.439449454 5.26E-06 5.278678018 4.445499431 TVNS(ph)EREIT(ph)RPSERPK ddPTM_HeLa_A486_30min_R1 1 TVNSEREITRPSERPK 16 3 A0A1W2PSB7 A0A1W2PSB7 2 0 T(0.004)VNS(0.98)EREIT(0.592)RPS(0.424)ERPK 58.997 0.013035 200860000 116230 131480 116580 2457.9 180690 110670 64222 94078 123100 20267 TRUE FALSE FALSE 108082.8772 121061.046 161722.8981 5722.115415 158026.1753 97016.66061 48152.97633 72658.49311 133770.4071 15192.01128 7.114454774 7.96873065 10.64525922 0.37665292 10.40192588 6.386031369 3.16962484 4.782677669 8.805312517 1 13.89102526 -8.8852673 0.218537901 1.22E-12 8.206888432 0.224368015 3.052926031 12.93899754 1.18022262 29.20489675 8.625233449 1.30E-09 8.8852673 8.206888432 TVNSTRET(ph)PPK ddPTM_HeLa_A485_30min_R1 1 TVNSTRETPPK 11 1 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK7;B0QZK5;B0QZK6;B0QZK9;B0QZK8;Q5SSJ5-5 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 TVNST(0.002)RET(0.998)PPK 86.291 0.0039316 1712900000 84410 118380 125380 145020 162820 108350 134170 136620 113500 231370 TRUE FALSE FALSE 103186.7133 132223.5112 171763.2795 152942.0754 146609.0691 114023.0385 105503.4834 103113.7308 136278.4089 173693.717 0.594072803 0.761245216 0.988885968 0.88052739 0.844066623 0.656460351 0.607411052 0.593652623 0.784590319 1 17.40618604 -6.256138019 24.61900991 0.695462919 0.824280703 0.055506421 0.144203126 711.6254764 3304725.137 0.048846229 0.047448836 5.54E-07 6.256138019 0.128817784 TVNSTRET(ph)PPK ddPTM_HeLa_A486_30min_R1 4 TVNSTRETPPK 11 1 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK7;B0QZK5;B0QZK6;B0QZK9;B0QZK8;Q5SSJ5-5 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 T(0.002)VNS(0.005)T(0.033)RET(0.96)PPK;TVNS(0.001)T(0.003)RET(0.996)PPK;TVNST(0.001)RET(0.999)PPK;T(0.001)VNS(0.001)T(0.015)RET(0.983)PPK ;;; 90.759 0.003189 5467820000 576360 592880 393963 258886 574552 668080 782310 738620 441496 840830 TRUE FALSE FALSE 535960.1403 545898.0296 546516.0243 602699.6914 502486.3307 585659.0821 586567.7636 570452.35 479765.2288 630280.6951 0.850351509 0.866118911 0.867099419 0.956240126 0.797242141 0.929203586 0.930645295 0.905076666 0.761192961 1 19.26563495 -5.024053378 24.39129718 0.893242674 0.860328661 0.055555037 0.06707033 1918.981452 1945945.432 0.017584163 0.030705323 9.46E-06 5.024053378 -0.032914013 TVNSTRET(ph)PPKSK ddPTM_HeLa_A485_30min_R1 3 TVNSTRETPPKSK 13 2 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK7;B0QZK5;B0QZK6;B0QZK9;B0QZK8;Q5SSJ5-5 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 TVNS(0.002)T(0.01)RET(0.988)PPKSK;TVNSTRET(1)PPKSK;TVNSTRET(1)PPKSK ;; 100.77 0.00073045 8136000000 680919 699297 442717 865060 1277690 966997 1767970 2703190 749985 1863180 TRUE FALSE FALSE 832387.0824 781073.7011 606496.4413 912316.0374 1150478.697 1017627.468 1390228.767 2040228.414 900500.1102 1398723.515 0.595104803 0.558418939 0.433607096 0.652249017 0.822520452 0.727540115 0.993926785 1.458635958 0.643801366 1 20.41567938 -6.234855632 1.109451082 1.056511366 0.538164432 0.494407915 0.200697313 0.387496018 0.994153003 0.10397781 0.096207157 5.82E-07 6.234855632 -0.518346933 TVNSTRET(ph)PPKSK ddPTM_HeLa_A486_30min_R1 4 TVNSTRETPPKSK 13 2 Q5SWC8;Q5SSJ5-2;Q5SSJ5;B0QZK7;B0QZK5;B0QZK6;B0QZK9;B0QZK8;Q5SSJ5-5 Q5SWC8 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 TVNST(0.002)RET(0.996)PPKS(0.002)K;TVNS(0.003)T(0.021)RET(0.975)PPKS(0.001)K;TVNSTRET(0.999)PPKS(0.001)K;TVNSTRET(0.999)PPKS(0.001)K ;;; 108.77 0.00034447 6253030000 1166565 847328 542574 713747 1226357 1081852 1841620 1719730 659242 1813730 TRUE FALSE FALSE 1084794.818 780182.6434 752673.1834 1661639.087 1072535.87 948384.0997 1380827.197 1328185.02 716385.6274 1359560.203 0.797901274 0.57384928 0.553615193 1.222188678 0.788884426 0.697566829 1.015642555 0.97692255 0.526924535 1 20.37470861 TVPFCSTFAAFFTR ddPTM_HeLa_A485_30min_R1 2 TVPFCSTFAAFFTR 14 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 251.81 1.42E-39 493400000 100207 129164 117514 180678 220886 105777 165397 149897 102303 238280 FALSE FALSE TRUE 122497.7014 144268.6062 160987.3188 190547.9816 198893.8143 111315.3202 130058.5798 113134.5257 122834.2737 178881.1812 0.684799265 0.806505219 0.899967887 1.065220949 1.111876682 0.622286366 0.727066866 0.632456276 0.686680806 1 17.44864209 -6.282049479 24.80999646 0.71031213 0.915378029 0.25808058 0.149963425 984.7986163 1185475.502 0.055006098 0.048564334 5.22E-07 6.282049479 0.205065899 TVPFCSTFAAFFTR ddPTM_HeLa_A486_30min_R1 2 TVPFCSTFAAFFTR 14 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 231.7 1.56E-29 467280000 191137 212150 173327 153067 221110 187093 283380 243000 197436 252930 FALSE FALSE TRUE 177739.2833 195338.4614 240443.8563 356347.7116 193376.322 164011.3679 212475.3267 187674.2047 214549.9114 189594.6817 0.937469774 1.030295046 1.268199372 1.879523773 1.01994592 0.865063125 1.120681893 0.989870618 1.131624102 1 17.53255897 -5.924633863 25 1.017518055 1.28402618 0.213220598 0.24234819 63.91844592 21200.35601 0.080503295 0.09128216 1.19E-06 5.924633863 0.266508126 TVPS(ph)TPTLVVPHR ddPTM_HeLa_A485_30min_R1 1 TVPSTPTLVVPHR 13 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 T(0.009)VPS(0.765)T(0.226)PTLVVPHR 186.56 2.11E-17 2009400000 976060 775040 730840 836160 809490 574150 654320 345420 471060 802590 TRUE FALSE FALSE 1193181.18 865674.186 1001208.129 881837.3035 728894.3333 604211.6062 514519.1867 260705.2034 565597.4212 602519.0836 1.980320976 1.43675812 1.661703598 1.463584022 1.209744808 1.002809077 0.853946706 0.432692027 0.938721173 1 19.20064741 -5.964779143 0.995182755 0.74624821 1.716442856 0.803897268 0.18805229 0.215765513 0.461499725 0.092028469 0.113828315 1.08E-06 5.964779143 0.970194646 TVPST(ph)PTLVVPHR ddPTM_HeLa_A485_30min_R1 5 TVPSTPTLVVPHR 13 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 T(0.001)VPS(0.118)T(0.881)PTLVVPHR;T(0.001)VPS(0.03)T(0.97)PTLVVPHR;TVPS(0.032)T(0.968)PTLVVPHR;T(0.001)VPS(0.024)T(0.975)PTLVVPHR;T(0.003)VPS(0.202)T(0.793)PT(0.001)LVVPHR ;;;; 188.12 3.12E-17 4038130000 1785170 1342570 1369370 1508790 1417850 1087400 1191920 702930 825110 1491920 TRUE FALSE FALSE 2182274.908 1499571.883 1875956.947 1591211.377 1276683.876 1144334.583 937256.5549 530535.3153 990702.0086 1120011.801 1.94843921 1.33888936 1.674943912 1.420709475 1.139884307 1.021716541 0.836827393 0.473687255 0.884546045 1 20.0950825 -5.941786051 0.980389524 0.746169922 1.673908147 0.786491863 0.189464909 0.231397684 0.481550745 0.092645556 0.118019103 1.14E-06 5.941786051 0.927738225 TVPST(ph)PTLVVPHR ddPTM_HeLa_A486_30min_R1 6 TVPSTPTLVVPHR 13 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 T(0.001)VPS(0.031)T(0.967)PT(0.001)LVVPHR;T(0.001)VPS(0.043)T(0.956)PTLVVPHR;TVPS(0.012)T(0.987)PTLVVPHR;T(0.001)VPS(0.036)T(0.963)PTLVVPHR;T(0.001)VPS(0.039)T(0.96)PTLVVPHR;T(0.003)VPS(0.265)T(0.731)PTLVVPHR ;;;;; 195.2 6.15E-18 5295970000 1806210 1716230 1256611 366396 1495810 1524140 1608760 1543440 1543760 1641660 TRUE FALSE FALSE 1679604.006 1580229.684 1743204.432 852988.4046 1308191.562 1336107.103 1206231.232 1192032.405 1677574.36 1230577.651 1.364890712 1.284136506 1.416574104 0.693160975 1.063071121 1.085756029 0.980215455 0.968677112 1.363241368 1 20.23090427 -5.22269952 24.99849317 1.023336777 1.348094144 0.487934455 0.156358639 471.977462 304562.3515 0.041659626 0.072154912 5.99E-06 5.22269952 0.324757368 TVQS(ph)LEIDLDSMR ddPTM_HeLa_A485_30min_R1 5 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;T(0.001)VQS(0.999)LEIDLDSMR;T(0.004)VQS(0.996)LEIDLDSMR ;;;; 271.19 1.95E-48 216916600 195396.8 240151 221146 211415 275708 251084 308839 329907 211010 300774 TRUE FALSE FALSE 238862.144 268234.5704 302957.1081 222964.0661 248257.5435 264230.37 242853.0247 248996.791 253357.7715 225796.5771 1.057864327 1.187947903 1.341725866 0.987455474 1.099474344 1.17021424 1.075539 1.102748297 1.122062056 1 17.78466409 -13.99999367 0.106519241 0.568748028 1.210919177 0.172076559 0.088465522 307.5694936 2.192553637 28.83310795 1.26422571 1.00E-14 13.99999367 0.642171149 TVQS(ph)LEIDLDSMR ddPTM_HeLa_A486_30min_R1 5 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;TVQS(1)LEIDLDSMR;T(0.01)VQS(0.99)LEIDLDSMR;TVQS(1)LEIDLDSMR ;;;; 316.39 1.70E-68 296203000 222489.7 241384 191215 84330.4 284338 215181.5 243178 258040.6 217923.5 258949.4 TRUE FALSE FALSE 206894.321 222255.8527 265258.5689 196325.433 248673.6767 188634.5943 182332.2923 199290.3884 236813.2844 194106.7848 1.065878873 1.145018465 1.366560006 1.01143004 1.281117901 0.971808351 0.939340129 1.026704907 1.220015492 1 17.56649102 -6.27422843 24.86633484 1.027478228 1.174056913 0.270985399 0.116707515 1013.69819 1970973.884 0.04089398 0.036293566 5.32E-07 6.27422843 0.146578685 TVQSLEIDLDSMR ddPTM_HeLa_A485_30min_R1 3 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ;; ;; 370.78 3.02E-128 61742000 52195.5 64708.3 60694.1 61727.6 88512 67776.3 73000.9 84959 59749.9 99220 FALSE FALSE TRUE 63806.2089 72275.3728 83147.37328 65099.62249 79699.4345 71324.96227 57403.66135 64122.67204 71741.15687 74486.28001 0.856616935 0.970317927 1.116277699 0.873981389 1.069988117 0.957558389 0.77066087 0.860865545 0.963145922 1 16.18468709 -6.541750949 24.96805807 0.883792963 0.982483506 0.130559575 0.092976638 392.8278015 519709.3656 0.034838147 0.026989819 2.87E-07 6.541750949 0.098690542 TVQSLEIDLDSMR ddPTM_HeLa_A486_30min_R1 2 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 276.47 7.56E-51 42577000 22610.4 27113 22765.9 10659 31509 26480 30346 28306 23429 27443 FALSE FALSE TRUE 21025.52772 24964.46714 31581.46617 24814.69068 27556.84741 23213.16683 22753.10983 21861.34172 25459.84458 20571.09418 1.022090879 1.213570213 1.535235117 1.206289294 1.339590747 1.128436175 1.10607193 1.062721386 1.237651452 1 14.32833091 -6.359901479 6.079373916 1.1087363 1.27217848 0.258560385 0.132209794 0.348168617 17.9029095 0.048035068 0.042230287 4.37E-07 6.359901479 0.16344218 TVRGS(ph)LER ddPTM_HeLa_A485_30min_R1 1 TVRGSLER 8 1 Q6NZI2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 TVRGS(1)LER 100.69 0.0010292 280120000 105420 146400 154860 113900 201180 167270 197600 246280 134270 157870 TRUE FALSE FALSE 128870.3153 163520.2065 212149.1583 120122.0686 181149.8128 176027.9986 155381.1458 185879.4438 161216.7574 118515.9144 1.087367177 1.379732058 1.790047854 1.013552224 1.52848513 1.485268873 1.311057224 1.568392269 1.36029628 1 16.85472127 -8.041091981 22.29034876 0.999999995 1.404016876 0.231399345 0.214498099 2929.228611 1588959.726 0.199121443 0.051412845 9.10E-09 8.041091981 0.404016881 TVRGS(ph)LER ddPTM_HeLa_A486_30min_R1 2 TVRGSLER 8 1 Q6NZI2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 TVRGS(1)LER;TVRGS(1)LER ; 92.866 0.0016819 669880000 305410 304440 283810 123451 441140 311640 374860 382700 264710 329520 TRUE FALSE FALSE 284002.3361 280315.0656 393708.8327 287400.1669 385808.1077 273193.0253 281066.0631 295567.5643 287655.2759 247006.0472 1.149778879 1.134851024 1.593923862 1.163534942 1.561937904 1.106017559 1.137891425 1.196600519 1.164567747 1 17.91418684 TVS(ph)ASESEDRLVAEQETEPSK ddPTM_HeLa_A486_30min_R1 1 TVSASESEDRLVAEQETEPSK 21 1 H3BNE2;Q9ULG6-3;Q9ULG6-4;Q9ULG6-2;Q9ULG6;Q9ULG6-5 H3BNE2 CCPG1 Cell cycle progression protein 1 1 0 T(0.137)VS(0.796)AS(0.043)ES(0.024)EDRLVAEQETEPSK 55.049 0.014182 83479000 98055 130210 157090 21904 172370 81538 89862 106000 142200 74324 TRUE FALSE FALSE 91181.85086 119891.6854 217919.455 50993.61897 150749.7473 71478.67058 67377.57714 81866.11396 154526.0105 55712.78663 1.63664136 2.151959947 3.911480078 0.915294711 2.7058375 1.282985018 1.209373668 1.469431327 2.773618407 1 15.76572086 -5.29467331 24.99992523 1.655718843 2.525222297 0.22103368 0.809574915 1006.278391 756961.7703 0.225513824 0.334513563 5.07E-06 5.29467331 0.869503454 TVS(ph)ASS(ph)TGDLPK ddPTM_HeLa_A486_30min_R1 1 TVSASSTGDLPK 12 0 P78362;P78362-2;H7C5L6 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 2 0 T(0.008)VS(0.99)AS(0.016)S(0.624)T(0.362)GDLPK 125.47 0.00018374 0 675990 576980 275640 313620 546670 593030 784110 747570 434710 915050 TRUE FALSE FALSE 628606.5918 531258.0035 382375.1899 730123.2095 478101.5511 519867.9881 587917.3845 577364.6303 472391.0128 685915.524 0.916448994 0.774523954 0.557466884 1.064450627 0.69702687 0.757918388 0.857127976 0.841743057 0.688701445 1 19.38767138 -10.15974488 4.572773526 1.000029532 0.794602422 0.17974647 0.131344759 3.79E-05 6.96E-06 0.121870353 0.029553656 6.92E-11 10.15974488 -0.205427111 TVS(ph)ASST(ph)GDLPK ddPTM_HeLa_A486_30min_R1 1 TVSASSTGDLPK 12 0 P78362;P78362-2;H7C5L6 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 2 0 T(0.012)VS(0.988)AS(0.018)S(0.409)T(0.573)GDLPK 131.66 0.00050639 0 811090 711020 336230 365800 633020 785140 989920 962730 548550 1111300 TRUE FALSE FALSE 754236.7795 654676.1857 466427.2606 851600.8865 553620.7289 688277.4095 742231.5457 743537.3952 596098.7557 833023.2467 0.905421046 0.785903861 0.559921062 1.022301466 0.664592172 0.826240339 0.891009403 0.892577006 0.715584779 1 19.66799723 -6.521093835 23.99058091 0.864810052 0.783668894 0.084386371 0.133423521 118.2939632 1590045.244 0.048783857 0.038415443 3.01E-07 6.521093835 -0.081141159 TVS(ph)DNSLSNSR ddPTM_HeLa_A485_30min_R1 4 TVSDNSLSNSR 11 0 Q96RU3-5;Q96RU3-2;Q96RU3;B7ZL14;H0Y7W6;Q96RU3-4;Q96RU3-3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 TVS(1)DNSLSNSR;TVS(0.99)DNS(0.01)LSNSR;T(0.004)VS(0.897)DNS(0.1)LSNSR;T(0.019)VS(0.787)DNS(0.194)LSNSR ;;; 302.34 3.72E-44 3282550000 1447030 1853490 1815560 1730270 2384620 1807500 2232120 2309800 1768900 2335680 TRUE FALSE FALSE 1768916.831 2070239.532 2487211.196 1824790.269 2147198.86 1902137.905 1755209.327 1743317.928 2123902.005 1753437.961 1.008827726 1.180674525 1.418476873 1.040692804 1.224565059 1.084804793 1.001010225 0.994228463 1.211278672 1 20.74175496 -6.418506395 5.003942306 1.050034121 1.180548353 0.195430644 0.119056556 0.373989709 14.39558883 0.043226992 0.037622891 3.81E-07 6.418506395 0.130514233 TVS(ph)DNSLSNSR ddPTM_HeLa_A486_30min_R1 4 TVSDNSLSNSR 11 0 Q96RU3-5;Q96RU3-2;Q96RU3;B7ZL14;H0Y7W6;Q96RU3-4;Q96RU3-3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 TVS(0.995)DNS(0.005)LSNSR;TVS(1)DNSLSNSR;TVS(1)DNSLSNSR;TVS(0.999)DNS(0.001)LSNSR ;;; 279.39 7.51E-35 6663140000 2367110 2598010 2108500 801722 2996080 2519770 2907070 2802350 2235620 2656940 TRUE FALSE FALSE 2201187.813 2392134.226 2924967.668 1866449.333 2620283.709 2208906.397 2179690.338 2164316.08 2429405.342 1991624.93 1.105222062 1.201096747 1.468633789 0.937149011 1.31565119 1.109097583 1.094428125 1.08670867 1.219810671 1 20.92551455 -6.250858996 0.940087147 1.099583404 1.218310933 0.102030766 0.138910728 1.383135583 2.611223454 0.081344269 0.075440388 5.61E-07 6.250858996 0.118727529 TVS(ph)DSIKK ddPTM_HeLa_A485_30min_R1 2 TVSDSIKK 8 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 T(0.012)VS(0.988)DSIKK;TVS(1)DSIKK ; 151.15 0.00012744 755690000 1719100 1073410 648220 2486090 1878120 1555630 2912010 2871540 1199050 3231820 TRUE FALSE FALSE 2101507.864 1198935.962 888023.5527 2621898.802 1691127.778 1637080.381 2289835.275 2167290.313 1439688.337 2426186.751 0.86617729 0.494164747 0.366016158 1.080666523 0.697031165 0.674754481 0.94380009 0.893290804 0.593395515 1 21.21025917 -5.254403278 24.99634674 0.827403845 0.567323952 0.29921166 0.184951302 710.3288482 2523497.65 0.050010493 0.084267805 5.57E-06 5.254403278 -0.260079893 TVS(ph)DSIKK ddPTM_HeLa_A486_30min_R1 3 TVSDSIKK 8 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 T(0.001)VS(0.999)DSIKK;T(0.001)VS(0.999)DSIKK;TVS(0.998)DS(0.002)IKK ;; 167.09 1.75E-05 1261250000 3474930 3478360 1394110 2632520 3153150 4759560 6892650 6190150 2455500 5755330 TRUE FALSE FALSE 3231355.352 3202722.086 1933946.728 6128639.6 2757652.525 4172373.879 5168036.067 4780787.975 2668344.717 4314157.907 0.74901184 0.742374794 0.448279078 1.420587686 0.639209919 0.967135179 1.197924642 1.108162491 0.61850882 1 22.04064755 -5.233541304 24.99792235 0.990292549 0.656137229 0.308854429 0.237389723 929.1667351 832573.9459 0.062823513 0.108785133 5.84E-06 5.233541304 -0.33415532 TVS(ph)EPNLK ddPTM_HeLa_A485_30min_R1 1 TVSEPNLK 8 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41;C9JF80;C9JAH2 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 T(0.002)VS(0.998)EPNLK 72.006 0.015275 112790000 63230 91352 61488 94629 99255 79230 122070 136790 81521 128110 TRUE FALSE FALSE 77295.29536 102034.8217 84234.96993 99798.34266 89372.82369 83378.36029 95988.74728 103242.038 97881.51695 96174.53469 0.803698147 1.060933875 0.875855238 1.037679496 0.929277422 0.866948414 0.998068227 1.073486223 1.017748797 1 16.55336732 -6.990661872 23.86474141 1.034525963 0.937164161 0.27843018 0.074147222 147.2292169 376260.2725 0.029360874 0.019758599 1.02E-07 6.990661872 -0.097361801 TVS(ph)EPSLSGLLQIK ddPTM_HeLa_A486_30min_R1 1 TVSEPSLSGLLQIK 14 0 E7EPB1;E7EQS8;Q6N021-2;Q6N021-3;Q6N021;D6RE87 E7EPB1 TET2 Methylcytosine dioxygenase TET2 1 0 T(0.008)VS(0.989)EPS(0.001)LS(0.002)GLLQIK 91.076 0.0013285 97217000 11336 10597 6634.7 4664 11717 14948 15809 15364 10876 18395 TRUE FALSE FALSE 10541.40494 9757.255126 9203.833523 10858.02771 10247.3446 13103.86774 11853.42099 11865.95259 11818.74044 13788.77227 0.764491917 0.707623198 0.667487529 0.787454278 0.743165846 0.950328824 0.859642959 0.860551785 0.857127829 1 13.75120639 -6.206926088 7.653825716 0.893833287 0.73131624 0.728718498 0.052061793 0.165890244 21.01427778 0.017174952 0.017131039 6.21E-07 6.206926088 -0.162517046 TVS(ph)FEALPIMR ddPTM_HeLa_A485_30min_R1 4 TVSFEALPIMR 11 0 O15084-2;O15084;O15084-4;O15084-1 O15084-2 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 1 0 T(0.002)VS(0.998)FEALPIMR;T(0.004)VS(0.996)FEALPIMR;T(0.001)VS(0.999)FEALPIMR;TVS(1)FEALPIMR ;;; 212.9 2.03E-15 381970000 216888 257152 266462 242500 348150 272758 400148 463340 329685 424522 TRUE FALSE FALSE 265133.9873 287223.6895 365037.3822 255747.161 313486.9636 287039.1871 314653.1109 349705.1385 395849.7554 318696.4781 0.831932593 0.901245257 1.145407644 0.80247878 0.98365368 0.900666329 0.987312796 1.097298409 1.242090147 1 18.28182355 -7.210104023 2.97420947 1.13329906 0.933856778 0.38743659 0.103643959 0.265072596 4.628071076 0.058471348 0.028431234 6.16E-08 7.210104023 -0.199442282 TVS(ph)FEALPIMR ddPTM_HeLa_A486_30min_R1 3 TVSFEALPIMR 11 0 O15084-2;O15084;O15084-4;O15084-1 O15084-2 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 1 0 T(0.053)VS(0.947)FEALPIMR;T(0.003)VS(0.997)FEALPIMR;TVS(1)FEALPIMR ;; 213.38 1.65E-15 391452000 249813 264595 227434 106934.2 293059 297940 357306 429978 247335 308784 TRUE FALSE FALSE 232302.3987 243627.5286 315502.5357 248948.2218 256300.8076 261183.192 267904.2596 332081.3958 268774.1969 231462.4766 1.003628762 1.05255734 1.363082865 1.075544622 1.1073104 1.128404033 1.157441429 1.434709421 1.161199867 1 17.8204188 -7.017687111 24.84771738 1.237987864 1.128163512 0.037369545 0.134480463 1535.935433 2157750.133 0.060693887 0.036000943 9.60E-08 7.017687111 -0.109824352 TVS(ph)KESLLVSHPSVQTK ddPTM_HeLa_A486_30min_R1 2 TVSKESLLVSHPSVQTK 17 1 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 T(0.001)VS(0.876)KES(0.123)LLVSHPSVQTK;T(0.132)VS(0.64)KES(0.205)LLVS(0.023)HPSVQTK ; 183.26 6.06E-18 685020000 590940 492930 309790 110499 633400 562080 775070 800270 521820 381430 TRUE FALSE FALSE 549518.1576 453868.4316 429748.9845 257247.2563 553953.0658 492736.2844 581139.2881 618065.9908 567051.7777 285917.4453 1.921946935 1.587410768 1.503052687 0.899725639 1.937458084 1.723351592 2.032542252 2.161693877 1.983271 1 18.12523912 TVS(ph)LCDITITQMLEEDSNQGHLIGDFSK ddPTM_HeLa_A485_30min_R1 2 TVSLCDITITQMLEEDSNQGHLIGDFSK 28 0 P30307-4;P30307-3;P30307-2;P30307;H0Y999 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 T(0.187)VS(0.804)LCDIT(0.005)IT(0.005)QMLEEDSNQGHLIGDFSK;T(0.041)VS(0.959)LCDITITQMLEEDSNQGHLIGDFSK ; 123.56 5.88E-06 166479000 84586 71797 67555 91231 117928 84377 125897 119897 74197 136931 TRUE FALSE FALSE 103401.8639 80193.0346 92546.4057 96214.71852 106186.6742 88794.84925 98998.07747 90492.07276 89087.65732 102796.6217 1.005887763 0.780113522 0.90028645 0.9359716 1.032978248 0.863791511 0.963047966 0.88030201 0.866639933 1 16.64943333 -5.107140376 5.326519052 0.931628775 0.881218275 0.05073031 0.072978138 0.588678382 24.1002879 0.019379555 0.034571419 7.81E-06 5.107140376 -0.0504105 TVS(ph)LCDITITQMLEEDSNQGHLIGDFSK ddPTM_HeLa_A486_30min_R1 3 TVSLCDITITQMLEEDSNQGHLIGDFSK 28 0 P30307-4;P30307-3;P30307-2;P30307;H0Y999 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 T(0.252)VS(0.748)LCDITITQMLEEDSNQGHLIGDFSK;T(0.088)VS(0.91)LCDIT(0.001)IT(0.001)QMLEEDSNQGHLIGDFSK;T(0.04)VS(0.954)LCDIT(0.005)IT(0.001)QMLEEDSNQGHLIGDFSK ;; 138.84 8.52E-07 241664000 86710 110464 74045 36402.1 118059 122469 155893 142378 91995 112900 TRUE FALSE FALSE 80632.07677 101710.4303 102717.207 84745.92846 103250.9394 107360.02 116886.9225 109961.6375 99969.20067 84629.10514 0.95277005 1.201837479 1.213733819 1.001380415 1.220040543 1.268594531 1.381166944 1.299335935 1.181262646 1 16.36886629 -5.949868437 10.4201037 1.253358244 1.108940666 0.206749908 0.119850045 0.683757649 138.1230208 0.036470428 0.041351874 1.12E-06 5.949868437 -0.144417579 TVS(ph)LSQMLR ddPTM_HeLa_A485_30min_R1 2 TVSLSQMLR 9 0 Q8IWE2;Q8IWE2-2 Q8IWE2 FAM114A1 Protein NOXP20 1 0 T(0.002)VS(0.998)LSQMLR;T(0.001)VS(0.956)LS(0.043)QMLR ; 123.67 0.00031461 150747000 64639 64760 72515 61654 95861 79347 90715 119264 66209 90775 TRUE FALSE FALSE 79017.72255 72333.11866 99341.3161 65022.0019 86316.74225 83501.48623 71332.99918 90014.317 79496.539 68146.46309 1.159527861 1.061436139 1.457761879 0.954150795 1.266635689 1.225323846 1.04676011 1.320894921 1.166554145 1 16.05635116 -11.15729842 2.154896182 0.594847077 1.185591168 0.138698947 0.137777279 2945582.452 728795.5584 5817988.724 0.03319113 6.96E-12 11.15729842 0.59074409 TVS(ph)LSQMLR ddPTM_HeLa_A486_30min_R1 2 TVSLSQMLR 9 0 Q8IWE2;Q8IWE2-2 Q8IWE2 FAM114A1 Protein NOXP20 1 0 T(0.002)VS(0.997)LS(0.001)QMLR;T(0.008)VS(0.984)LS(0.009)QMLR ; 138.99 0.00014904 97294000 75655 83620 66278 48290 111716 121491 138062 233500 106934 137182 TRUE FALSE FALSE 70351.97518 76993.64666 91942.61659 112421.5604 97703.53757 106502.6756 103517.4273 180337.1473 116203.1252 102830.7343 0.684153193 0.748741582 0.894116114 1.09326809 0.950139452 1.035708598 1.006677897 1.75372809 1.130042745 1 16.649912 -5.421355585 0.545651846 1.277260077 0.611852942 0.421349589 0.210097708 1.337616101 0.688766063 0.153849309 0.49501043 3.79E-06 5.421355585 -0.665407135 TVS(ph)PGSVS(ph)PIHGQGQVVENLK ddPTM_HeLa_A485_30min_R1 2 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 2 0 T(0.011)VS(0.989)PGS(0.035)VS(0.965)PIHGQGQVVENLK;T(0.09)VS(0.91)PGS(0.066)VS(0.934)PIHGQGQVVENLK ; 199.92 1.90E-26 323670000 411550 447270 352690 534840 592560 539460 704320 693530 388420 746570 TRUE FALSE FALSE 503097.8777 499574.3358 483164.7077 564056.9549 533562.6458 567705.2914 553836.2782 523440.6801 466372.3312 560463.8386 0.897645563 0.891358731 0.862080074 1.006410969 0.952001912 1.012920464 0.988174865 0.933941932 0.832118504 1 19.09626177 -5.250635056 24.97779864 0.96098938 0.88446118 0.331560082 0.050162934 888.6331558 2054368.494 0.014232956 0.024333053 5.62E-06 5.250635056 -0.0765282 TVS(ph)PGSVS(ph)PIHGQGQVVENLK ddPTM_HeLa_A486_30min_R1 1 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 2 0 T(0.085)VS(0.915)PGS(0.052)VS(0.948)PIHGQGQVVENLK 171.73 7.27E-14 181960000 298530 376540 242920 146500 373520 369610 431000 425350 291490 433460 TRUE FALSE FALSE 277604.5886 346701.5991 336985.1296 341059.4037 326669.6387 324011.2761 323159.2413 328507.0903 316756.5879 324918.7946 0.854381443 1.067040765 1.037136464 1.049675825 1.005388559 0.997206937 0.994584637 1.011043669 0.974879241 1 18.30971967 -4.250017914 24.99822416 1.015809511 0.854381348 0.766797342 0.026607326 873.6304835 1912086.171 0.007102222 0.107860572 5.62E-05 4.250017914 -0.161428163 TVS(ph)PPIR ddPTM_HeLa_A485_30min_R1 6 TVSPPIR 7 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 TVS(1)PPIR;T(0.029)VS(0.971)PPIR;TVS(1)PPIR;TVS(1)PPIR;TVS(1)PPIR;T(0.004)VS(0.996)PPIR ;;;;; 162.59 2.26E-05 13984700000 231719 294060 300836 257843 401473 275383 356433 383046 293133 354625 TRUE FALSE FALSE 283264.0921 328447.759 412127.7552 271928.3102 361500.9385 289801.6281 280278.1778 289103.3679 351962.1043 266223.5139 1.064008539 1.233729336 1.54805167 1.021428597 1.357885084 1.088565108 1.052792722 1.085942273 1.322054912 1 18.02227848 -6.28748621 24.55169144 1.111674986 1.248806641 0.154758977 0.157771519 1197.60018 1128851.14 0.054937452 0.048466979 5.16E-07 6.28748621 0.137131655 TVS(ph)PPIR ddPTM_HeLa_A486_30min_R1 5 TVSPPIR 7 0 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 T(0.001)VS(0.999)PPIR;TVS(1)PPIR;TVS(1)PPIR;T(0.001)VS(0.999)PPIR;T(0.035)VS(0.965)PPIR ;;;; 162.59 0.00034546 19940840000 306881 356132 323809 133204 426722 339944 383821 405848 303974 345984 TRUE FALSE FALSE 285370.2266 327910.8033 449196.5167 310105.6438 373198.5477 298005.1656 287784.9262 313445.27 330322.7111 259347.3544 1.100339841 1.264369186 1.732026601 1.19571547 1.43899115 1.149058051 1.109650518 1.20859251 1.273669098 1 17.98452613 -6.276028752 23.80056511 1.158822068 1.354802109 0.250322294 0.170595547 655.0368494 1068598.312 0.060652751 0.053750092 5.30E-07 6.276028752 0.195980041 TVS(ph)PPIRK ddPTM_HeLa_A485_30min_R1 5 TVSPPIRK 8 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 T(0.183)VS(0.817)PPIRK;T(0.026)VS(0.974)PPIRK;T(0.168)VS(0.832)PPIRK;T(0.043)VS(0.957)PPIRK;T(0.028)VS(0.972)PPIRK ;;;; 78.556 0.0060301 37470500000 3708380 4103420 3220490 3979970 5647020 4311440 5766950 6485270 3839660 5439720 TRUE FALSE FALSE 4533296.337 4583279.274 4411883.267 4197385.683 5084782.861 4537180.332 4534794.021 4894747.364 4610244.543 4083697.915 1.110095906 1.122335533 1.080364748 1.027839417 1.245141773 1.111047004 1.110462653 1.198606622 1.128938682 1 21.96144472 TVS(ph)PPIRK ddPTM_HeLa_A486_30min_R1 6 TVSPPIRK 8 1 Q9UHB6;Q9UHB6-4;F8VQE1;Q9UHB6-2;Q9UHB6-5;F8VS07;Q9UHB6-3 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 0 T(0.03)VS(0.97)PPIRK;T(0.023)VS(0.977)PPIRK;T(0.019)VS(0.981)PPIRK;T(0.014)VS(0.986)PPIRK;T(0.086)VS(0.914)PPIRK;T(0.052)VS(0.948)PPIRK ;;;;; 87.298 0.0025967 25455660000 4341680 4699320 3140540 1867080 5063220 4886170 5719200 5661280 3600510 4854020 TRUE FALSE FALSE 4037350.652 4326928.769 4356641.195 4346656.597 4428143.735 4283364.024 4288195.668 4372330.129 3912605.106 3638541.798 1.109606781 1.189193091 1.197359117 1.194614997 1.217010545 1.177219959 1.178547865 1.201670991 1.075322292 1 21.79492895 -7.9406777 3.432702789 1.000967729 1.18495622 0.826857823 0.027610493 0.0777002 1.905623662 0.026519006 0.007052986 1.15E-08 7.9406777 0.183988492 TVS(ph)PSTIR ddPTM_HeLa_A485_30min_R1 2 TVSPSTIR 8 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 T(0.019)VS(0.97)PS(0.011)TIR;T(0.012)VS(0.96)PS(0.014)T(0.014)IR ; 107.79 0.0013277 2520700000 702480 970200 908170 853660 1089600 818460 1127280 1054000 820010 1123910 TRUE FALSE FALSE 858744.2525 1083656.45 1244139.875 900293.2842 981115.5982 861313.3 886427.419 795504.8474 984578.4854 843739.921 1.017783124 1.284348913 1.474553762 1.067027009 1.162817562 1.020827957 1.050593195 0.942831822 1.166921774 1 19.68643884 -5.469320028 24.95845218 1.058003277 1.262999128 0.365297802 0.1209368 334.2848784 155776.8564 0.034288305 0.050857365 3.39E-06 5.469320028 0.20499585 TVS(ph)PSTIR ddPTM_HeLa_A486_30min_R1 3 TVSPSTIR 8 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 T(0.001)VS(0.998)PS(0.001)TIR;T(0.001)VS(0.991)PS(0.007)T(0.001)IR;T(0.084)VS(0.915)PS(0.001)TIR ;; 131.22 0.00053831 3599690000 1928960 2200350 1697070 668930 2283320 1900310 2183710 2268110 1832590 2102710 TRUE FALSE FALSE 1793749.865 2025986.252 2354220.953 1557302.846 1996924.714 1665869.073 1637322.661 1751710.865 1991440.377 1576177.73 1.138037819 1.285379316 1.493626581 0.988024901 1.266941333 1.056904334 1.038793171 1.111366334 1.263461816 1 20.58799879 -5.274136358 24.97475464 1.110436706 1.303651061 0.367522822 0.121220054 816.027811 1605112.167 0.033820259 0.050534986 5.32E-06 5.274136358 0.193214355 TVS(ph)QQS(ph)FDGVSLDSSGPEDR ddPTM_HeLa_A486_30min_R1 1 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 2 0 T(0.004)VS(0.996)QQS(1)FDGVSLDSSGPEDR 161.31 6.09E-13 166600000 156390 145300 117070 70072 172190 169220 200120 222770 144830 185780 TRUE FALSE FALSE 145427.8686 133785.8988 162402.6392 163131.1572 150592.3246 148343.3569 150047.8593 172050.134 157383.981 139259.4788 1.044294219 0.9606951 1.166187327 1.171418698 1.08137935 1.065229873 1.077469632 1.235464441 1.130149146 1 17.087416 -4.760711762 24.99999858 1.121887766 1.002494646 0.322903517 0.065237069 20.32469142 698198.5546 0.017035068 0.039971682 1.73E-05 4.760711762 -0.11939312 TVS(ph)QQSFDGVSLDSSGPEDR ddPTM_HeLa_A485_30min_R1 1 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 TVS(1)QQSFDGVSLDSSGPEDR 355.57 6.91E-128 99552000 84531 115090 99362 81660 120380 78273 111650 114850 70637 108350 TRUE FALSE FALSE 103334.6293 128548.7744 136120.1386 86120.87903 108394.5445 82371.25325 87795.0654 86682.85742 84813.19798 81340.33903 1.270398311 1.58038159 1.673464117 1.058772069 1.332605025 1.012674083 1.079354555 1.065681044 1.042695408 1 16.31168338 -5.271873772 24.95257093 1.094402536 1.515311365 0.692946304 0.129056266 369.7231185 884146.7951 0.036633416 0.054987692 5.35E-06 5.271873772 0.420908829 TVS(ph)SDGCSTPSREEGGCSLASTPATTLHLLQLSGQR ddPTM_HeLa_A486_30min_R1 1 TVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR 36 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.024)VS(0.511)S(0.449)DGCS(0.005)T(0.005)PS(0.005)REEGGCSLASTPATTLHLLQLSGQR 131.57 1.19E-06 356770000 29893 50611 54003 4852.5 66218 45158 50908 49061 34762 43047 TRUE FALSE FALSE 27797.65507 46600.40004 74914.40785 11296.86523 57912.32098 39586.86509 38170.27995 37890.88129 37775.19815 32267.75101 0.861468624 1.444178741 2.321649495 0.350097694 1.794743023 1.226824425 1.182923469 1.17426471 1.170679609 1 14.97780541 -7.328167599 0.598010723 1.017325116 1.381483882 0.043125971 0.491359561 2.687857258 2.049523807 0.469999321 0.258646458 4.70E-08 7.328167599 0.364158766 TVS(ph)SPIPY(ph)TPSPSSSRPIS(ph)PGLSYASHTVGFT(ph)PPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 4 0 T(0.083)VS(0.458)S(0.458)PIPY(0.333)T(0.333)PS(0.325)PS(0.041)S(0.041)S(0.041)RPIS(0.738)PGLS(0.068)Y(0.045)AS(0.061)HT(0.06)VGFT(0.664)PPT(0.087)S(0.081)LT(0.081)R 99.983 1.62E-05 96434000 14742 26942 23774 20697 34113 19789 27559 23981 17798 19986 TRUE FALSE FALSE 18021.30704 30092.63254 32568.99192 21827.6247 30716.58994 20825.12144 21670.79451 18099.62215 21369.89535 15003.85802 1.201111542 2.005659645 2.17070782 1.454800804 2.047246109 1.387984438 1.444348146 1.206331207 1.42429336 1 13.8730459 -6.410438269 5.61636682 1.302708345 1.791725368 0.407873231 0.292235369 0.240918176 10.36405475 0.102351132 0.089536514 3.89E-07 6.410438269 0.489017023 TVS(ph)SPIPYTPS(ph)PSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 0 T(0.128)VS(0.712)S(0.16)PIPY(0.004)T(0.005)PS(0.931)PS(0.072)S(0.14)S(0.13)RPIS(0.406)PGLS(0.058)Y(0.156)AS(0.047)HT(0.047)VGFT(0.005)PPTSLTR 91.759 0.00016079 106310000 30545 31813 28785 8700.1 39978 21539 32619 33413 23338 26875 TRUE FALSE FALSE 28403.95323 29292.02202 39931.32289 20254.27248 34963.58646 18881.73717 24457.38119 25805.5893 25360.95663 20145.32507 1.409952589 1.454035709 1.982163244 1.005408074 1.735568244 0.937276371 1.214047483 1.2809716 1.258900342 1 14.29815747 -6.261541348 25 1.160537908 1.511277253 0.35644961 0.253800693 11.55868801 2833639.052 0.084148891 0.078991857 5.48E-07 6.261541348 0.350739345 TVS(ph)SPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 T(0.127)VS(0.824)S(0.049)PIPYT(0.005)PS(0.003)PS(0.004)S(0.003)S(0.003)RPIS(0.975)PGLS(0.006)YAS(0.001)HTVGFTPPTSLTR 156.07 4.87E-10 941470000 109510 142950 141590 89812 200240 178750 263570 327100 245830 261810 TRUE FALSE FALSE 133870.1217 159666.759 193970.0331 94718.20214 180303.4025 188109.0736 207256.1163 246878.2121 295165.8261 196545.5853 0.681114875 0.812365024 0.986895904 0.481914677 0.917361752 0.957076056 1.054493878 1.256086275 1.501767774 1 17.58450443 -6.75842863 1.395453751 1.281589395 0.770693765 0.59442675 0.171139484 0.285686403 1.126144541 0.102538228 0.060281371 1.74E-07 6.75842863 -0.51089563 TVS(ph)SPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 TVS(0.5)S(0.5)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 205.44 4.36E-30 538430000 140580 154390 120190 17201 168490 128730 151130 158290 150140 111260 TRUE FALSE FALSE 130726.068 142155.5741 166730.7868 40044.79729 147356.4131 112848.6014 113315.6755 122250.8224 163154.2561 83399.77182 1.567463137 1.70450795 1.999175575 0.480154758 1.7668683 1.353104439 1.358704863 1.46584121 1.956291397 1 16.34775582 TVS(ph)SPPTSPRPGSAATVSASTSNIIPPR ddPTM_HeLa_A485_30min_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 T(0.004)VS(0.496)S(0.496)PPT(0.004)S(0.001)PRPGSAATVSASTSNIIPPR 69.482 0.0038096 603410000 86504 107250 108090 83427 131620 104130 116170 122410 102800 105380 TRUE FALSE FALSE 105746.5164 119791.9545 148076.989 87984.40576 118515.4507 109582.0858 91349.33048 92388.75557 123431.0171 79110.70538 1.336690349 1.514231911 1.871769292 1.112168136 1.498096245 1.385173919 1.154702515 1.167841383 1.560231532 1 16.27158532 -5.999943364 0.938085301 1.238523267 1.529460149 0.209959645 0.220627762 0.921858 1.765537138 0.117477671 0.14208325 1.00E-06 5.999943364 0.290936882 TVSASS(ph)TGDLPK ddPTM_HeLa_A485_30min_R1 3 TVSASSTGDLPK 12 0 P78362;P78362-2;H7C5L6 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 TVSASS(0.997)T(0.003)GDLPK;TVSAS(0.001)S(0.994)T(0.005)GDLPK;TVSAS(0.014)S(0.921)T(0.065)GDLPK ;; 293.13 1.07E-49 858410000 1426270 1394250 904730 1872350 1828780 1541030 2216710 2255440 1247270 2562730 TRUE FALSE FALSE 1743538.841 1557295.409 1239427.276 1974631.739 1646700.242 1621715.948 1743091.8 1702289.804 1497585.648 1923888.575 0.906257703 0.809451976 0.64423028 1.026375314 0.855922876 0.842936524 0.90602534 0.884817253 0.778416 1 20.87559381 -11.46374955 2.294555109 2.727436718 0.850972334 0.186365484 0.093711639 5438316.972 779915.0796 48756029.01 0.023572111 3.44E-12 11.46374955 -1.876464383 TVSASS(ph)TGDLPK ddPTM_HeLa_A486_30min_R1 3 TVSASSTGDLPK 12 0 P78362;P78362-2;H7C5L6 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 TVSAS(0.001)S(0.991)T(0.008)GDLPK;TVSAS(0.001)S(0.996)T(0.003)GDLPK;TVSASS(0.998)T(0.002)GDLPK ;; 282.91 5.22E-41 805820000 2389580 2116820 1031570 1046330 2082930 2402550 2877960 2645610 1711570 3088200 TRUE FALSE FALSE 2222082.782 1949075.474 1431021.53 2435909.119 1821669.497 2106147.808 2157863.968 2043262.356 1859930.266 2314894.619 0.959906668 0.841971577 0.618179989 1.052276461 0.786934093 0.909824487 0.932165097 0.882658908 0.803462175 1 21.14251509 -5.278121257 24.99495953 0.90056441 0.810214584 0.156140157 0.108140267 1646.937989 2467653.453 0.02996067 0.044577737 5.27E-06 5.278121257 -0.090349826 TVSASST(ph)GDLPK ddPTM_HeLa_A485_30min_R1 1 TVSASSTGDLPK 12 0 P78362;P78362-2;H7C5L6 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 TVSAS(0.041)S(0.304)T(0.655)GDLPK 98.353 0.0061113 361430000 511210 476030 344990 667790 624620 541230 832440 817590 474460 971100 TRUE FALSE FALSE 624926.9008 531697.5676 472616.1572 704269.6768 562430.6396 569567.9659 654582.3936 617074.7706 569679.77 729022.6418 0.857211923 0.729329293 0.648287351 0.96604637 0.771485832 0.781276099 0.897890348 0.84644116 0.781429461 1 19.4756041 -14 0.151198948 1.686097084 0.749801769 0.324267877 0.08395055 160.3085156 1.432353292 33.02348293 0.420239069 1.00E-14 14 -0.936295315 TVSGPGTPEPRPAT(ph)PGASSVEQLR ddPTM_HeLa_A485_30min_R1 3 TVSGPGTPEPRPATPGASSVEQLR 24 1 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 TVSGPGTPEPRPAT(0.996)PGAS(0.003)S(0.001)VEQLR;TVSGPGTPEPRPAT(0.997)PGAS(0.001)S(0.002)VEQLR;TVSGPGTPEPRPAT(0.995)PGAS(0.004)S(0.001)VEQLR ;; 172.11 2.94E-14 1662160000 494290 729010 750830 531930 779190 702710 795360 871920 679670 797880 TRUE FALSE FALSE 604243.1052 814261.378 1028593.262 560987.989 701611.1077 739502.809 625424.8385 658080.2529 816073.5347 598983.1999 1.00878139 1.359406037 1.717232239 0.936567151 1.171336872 1.234596912 1.044144207 1.098662288 1.362431425 1 19.19215601 -5.291718462 24.99608547 1.128831562 1.361566852 0.241813668 0.194978843 988.2712004 815838.6279 0.055110783 0.081754781 5.11E-06 5.291718462 0.23273529 TVSGPGTPEPRPAT(ph)PGASSVEQLR ddPTM_HeLa_A486_30min_R1 2 TVSGPGTPEPRPATPGASSVEQLR 24 1 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 TVSGPGTPEPRPAT(0.884)PGAS(0.092)S(0.024)VEQLR;TVSGPGTPEPRPAT(0.998)PGAS(0.002)SVEQLR ; 207.48 1.08E-28 799810000 529400 578400 529720 222500 695040 589560 695310 677710 526240 621550 TRUE FALSE FALSE 492291.7938 532565.4775 734841.7704 517991.2445 607861.6022 516826.0814 521336.0838 523410.2273 571854.9069 465909.8344 1.056624603 1.143065542 1.577218844 1.111784312 1.304676479 1.109283478 1.118963467 1.123415281 1.227393939 1 18.82969126 -6.275906059 23.43378764 1.123721685 1.245121002 0.154387891 0.142774967 723.2458825 1171541.161 0.050590392 0.044859397 5.30E-07 6.275906059 0.121399317 TVSGPGTPEPRPAT(ph)PGASSVEQLRK ddPTM_HeLa_A485_30min_R1 5 TVSGPGTPEPRPATPGASSVEQLRK 25 2 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 TVSGPGTPEPRPAT(1)PGASSVEQLRK;TVSGPGT(0.001)PEPRPAT(0.998)PGAS(0.001)SVEQLRK;TVSGPGT(0.008)PEPRPAT(0.978)PGAS(0.007)S(0.007)VEQLRK;TVSGPGTPEPRPAT(1)PGASSVEQLRK;TVSGPGTPEPRPAT(1)PGASSVEQLRK ;;;; 218.55 5.04E-38 10051760000 3620900 4874200 3576370 3746520 6509170 5701100 7879880 9964580 4071660 5712740 TRUE FALSE FALSE 4426356.713 5444195.29 4899418.088 3951182.901 5861094.18 5999600.78 6196279.265 7520751.131 4888804.815 4288659.053 1.032107393 1.269439986 1.142412588 0.921309634 1.3666496 1.398945616 1.444805751 1.753636985 1.139937858 1 22.0320952 -5.879962654 7.935976242 1.398464447 1.108367162 0.258873374 0.205421812 0.288508241 18.8319127 0.062024448 0.070466001 1.32E-06 5.879962654 -0.290097284 TVSGPGTPEPRPAT(ph)PGASSVEQLRK ddPTM_HeLa_A486_30min_R1 4 TVSGPGTPEPRPATPGASSVEQLRK 25 2 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 TVSGPGTPEPRPAT(1)PGASSVEQLRK;TVSGPGTPEPRPAT(1)PGASSVEQLRK;TVSGPGTPEPRPAT(1)PGASSVEQLRK;TVSGPGTPEPRPAT(1)PGASSVEQLRK ;;; 192.22 9.55E-21 6831300000 3505230 3008330 2146840 1466240 4061030 3334570 4445150 4466700 2488550 4298070 TRUE FALSE FALSE 3259531.478 2769938.975 2978153.942 3413480.82 3551657.75 2923184.657 3332926.454 3449729.917 2704259.518 3221805.296 1.01170964 0.859747477 0.924374277 1.059493205 1.10238125 0.907312636 1.034490339 1.070744381 0.839361559 1 21.61943788 -5.231880899 22.44924839 1.006511606 0.924724067 0.130650937 0.081558105 361.0147193 274182.7287 0.021727061 0.037618753 5.86E-06 5.231880899 -0.081787538 TVSLGAGAK ddPTM_HeLa_A485_30min_R1 2 TVSLGAGAK 9 0 P06748;P06748-3;P06748-2;E5RGW4 P06748 NPM1 Nucleophosmin 0 0 ; ; 134.15 0.0014762 258200000 243990 235370 185904 274160 277290 246620 312110 284390 224030 365550 FALSE FALSE TRUE 298264.7337 262894.4741 254677.6257 289136.6666 249682.034 259532.6419 245425.1488 214642.9066 268990.7661 274425.1124 1.086871136 0.957982568 0.928040526 1.053608629 0.909836683 0.945732114 0.894324672 0.782154755 0.980197343 1 18.06605298 -5.792946431 21.22777591 0.907947033 0.997537834 0.264825306 0.069751902 50.97852393 34345.61453 0.021527857 0.024416874 1.61E-06 5.792946431 0.089590801 TVSLGAGAK ddPTM_HeLa_A486_30min_R1 2 TVSLGAGAK 9 0 P06748;P06748-3;P06748-2;E5RGW4 P06748 NPM1 Nucleophosmin 0 0 ; ; 113.71 0.0074999 187226000 49490 67894 52974 23855 73065 68636 68341 65561 56756 69211 FALSE FALSE TRUE 46021.00657 62513.83217 73486.95149 55535.64556 63900.5064 60168.38816 51241.35896 50634.19149 61675.65578 51880.11511 0.887064465 1.204967106 1.416476261 1.070461109 1.23169554 1.159758185 0.987687842 0.975984563 1.188811082 1 15.66289406 -6.689835802 6.978200655 1.036446292 1.175223407 0.160208811 0.136748074 0.385519516 30.7249127 0.053222226 0.04090342 2.04E-07 6.689835802 0.138777114 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK ddPTM_HeLa_A485_30min_R1 14 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.005)EGS(0.995)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.027)EGS(0.973)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.005)EGS(0.995)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.029)EGS(0.971)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK ;;;;;;;;;;;;; 241.22 3.83E-50 1511554000 1209862 770734.9 612149.2 2117095 1603307 1160585 2185100 1833274 1096607 2965900 TRUE FALSE FALSE 1478991.628 860865.6421 838608.6627 2232746.539 1443676.126 1221351.436 1718235.534 1383660.677 1316685.966 2226555.713 0.664250896 0.386635572 0.376639425 1.00278045 0.64838985 0.548538457 0.771701118 0.621435461 0.5913555 1 21.08638228 -14 0.155989447 2.318816724 0.520104047 0.306350877 0.170554387 177.4834817 1.610687751 73.07121882 0.816032911 1.00E-14 14 -1.798712676 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK ddPTM_HeLa_A486_30min_R1 18 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.001)EGS(0.999)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.006)EGS(0.994)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.006)EGS(0.994)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK ;;;;;;;;;;;;;;;;; 255.04 1.25E-62 3197723000 1630788.6 1544283.5 814959.82 1147262.4 1668784.6 2414599.6 3094541.8 2859841.6 1515842.5 2879858.8 TRUE FALSE FALSE 1516478.741 1421908.851 1130534.088 2670884.847 1459470.075 2116710.851 2320254.711 2208718.098 1647236.948 2158723.412 0.702488671 0.658680424 0.523704927 1.237251994 0.676080162 0.980538238 1.074827233 1.023159375 0.763060677 1 21.04174698 -5.241411448 24.99973173 0.959139937 0.631330233 0.505181787 0.152617346 680.9516445 849992.2601 0.040199929 0.069512636 5.74E-06 5.241411448 -0.327809704 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_HeLa_A485_30min_R1 15 TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLK 35 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.003)EGS(0.996)PIKVT(0.001)LATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.154)EGS(0.837)PIKVT(0.009)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.002)EGS(0.998)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.462)EGS(0.489)PIKVT(0.03)LAT(0.019)LK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.006)EGS(0.994)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.004)EGS(0.969)PIKVT(0.027)LATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;T(0.085)VS(0.085)LGAGAKDELHIVEAEAMNY(0.351)EGS(0.38)PIKVT(0.099)LATLK ;;;;;;;;;;;;;; 314.67 9.08E-111 8049594000 1295509 933129.3 584377.6 1973199 2135176 1753591 3577051 4542123 1202496 3172126 TRUE FALSE FALSE 1583690.508 1042250.654 800563.1922 2080989.865 1922590.38 1845406.313 2812784.832 3428160.212 1443825.917 2381373.367 0.665032426 0.437667889 0.3361771 0.873861232 0.80734521 0.774933632 1.181160784 1.439572753 0.606299683 1 21.1833624 -5.825985516 1.077043368 1.062418884 0.48103424 0.456428959 0.233278638 0.434949203 1.078564994 0.106303541 0.149696949 1.49E-06 5.825985516 -0.581384644 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_HeLa_A486_30min_R1 17 TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLK 35 2 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.001)EGS(0.998)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.008)EGS(0.98)PIKVT(0.012)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.027)EGS(0.973)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.04)EGS(0.954)PIKVT(0.006)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.022)EGS(0.978)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.001)EGS(0.999)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.029)EGS(0.968)PIKVT(0.002)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.002)EGS(0.998)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;T(0.022)VS(0.022)LGAGAKDELHIVEAEAMNY(0.396)EGS(0.431)PIKVT(0.129)LATLK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.012)EGS(0.988)PIKVT(0.001)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.001)EGS(0.999)PIKVT(0.001)LATLK ;;;;;;;;;;;;;;;; 505.5 0 7343654000 1397757.8 1034343.6 489064.9 1098864.6 1527722.8 1842209.3 2783830 2645648.1 1029898.9 2397440 TRUE FALSE FALSE 1299782.196 952378.4461 678443.9269 2558212.322 1336101.561 1614936.247 2087286.29 2043291.782 1119171.366 1797105.419 0.723264302 0.529951352 0.377520383 1.423518228 0.743474226 0.898631894 1.161471257 1.136990496 0.622763336 1 20.77724361 -5.238442144 24.99766052 0.995879885 0.542215927 0.46325582 0.224200743 706.4448679 767894.4117 0.059477239 0.102930314 5.78E-06 5.238442144 -0.453663958 TVSLGAGAKDELHIVEAEAMNYEGSPIK ddPTM_HeLa_A485_30min_R1 2 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ; ; 196.49 1.54E-40 17731000 18125.3 16350.2 14381.1 23535 34868 22978.9 41140 41357 21847.4 38418 FALSE FALSE TRUE 22157.21045 18262.21366 19701.26734 24820.65746 31396.41949 24182.03967 32350.10292 31214.1309 26231.97278 28841.09963 0.768251237 0.633201019 0.683096955 0.860600247 1.088599946 0.838457617 1.121666765 1.082279501 0.909534419 1 14.81583855 -5.470596258 3.238096716 1.007967798 0.689767399 0.723331106 0.086257841 0.126714511 2.642593848 0.02549864 0.038034268 3.38E-06 5.470596258 -0.318200399 TVSLPLSS(ph)PNIK ddPTM_HeLa_A485_30min_R1 2 TVSLPLSSPNIK 12 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 TVSLPLS(0.042)S(0.958)PNIK;TVSLPLS(0.001)S(0.999)PNIK ; 283.05 5.11E-41 1677750000 1711650 1448080 1070670 2108730 2064590 1624590 2475600 2020550 1353950 2557100 TRUE FALSE FALSE 2092400.637 1617420.359 1466755.387 2223924.58 1859032.17 1709651.02 1946667.836 1525006.944 1625675.346 1919662.03 1.089983864 0.842554749 0.764069594 1.158497978 0.968416389 0.890600009 1.014068 0.794414288 0.846854978 1 20.87242091 -7.257011132 24.84147965 0.865475976 0.95418117 0.082986707 0.118370378 835.5152925 4687089.205 0.058429006 0.032229853 5.53E-08 7.257011132 0.088705193 TVSLPLSS(ph)PNIK ddPTM_HeLa_A486_30min_R1 2 TVSLPLSSPNIK 12 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 TVSLPLS(0.042)S(0.958)PNIK;TVSLPLS(0.109)S(0.891)PNIK ; 264.28 1.30E-33 1702250000 2195600 2029400 1143520 915400 1865960 2072000 2520000 2290900 1512840 2454100 TRUE FALSE FALSE 2041699.778 1868582.953 1586321.569 2131097.462 1631913.897 1816377.707 1889469.346 1769312.08 1643974.189 1839577.386 1.109874362 1.015767516 0.862329348 1.158471221 0.88711348 0.987388582 1.027121425 0.96180356 0.893669492 1 20.81094294 -4.348284435 3.992227389 0.975153706 1.112219328 0.208778373 0.080479432 0.328991499 8.66475759 0.019286478 0.103872044 4.48E-05 4.348284435 0.137065622 TVSLTPS(ph)PTTQVETPDLVDHDNT(ph)SPLFR ddPTM_HeLa_A486_30min_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 TVS(0.001)LT(0.013)PS(0.9)PT(0.063)T(0.023)QVET(0.003)PDLVDHDNT(0.598)S(0.4)PLFR 103.94 0.00081153 144910000 77100 93949 75130 33389 107890 92958 94738 94045 90208 105410 TRUE FALSE FALSE 71695.68814 86504.13908 104222.3481 77731.27939 94357.43017 81489.78709 71033.55036 72633.00649 98027.30207 79014.6499 0.907372092 1.094786083 1.319025626 0.983757816 1.1941764 1.031325042 0.898992155 0.919234681 1.240621862 1 16.26983254 -6.50605079 24.01047914 1.001864145 1.106021264 0.08119507 0.134943417 991.1045982 1414134.201 0.048328401 0.041540493 3.12E-07 6.50605079 0.104157119 TVSLTPS(ph)PTTQVETPDLVDHDNTSPLFR ddPTM_HeLa_A485_30min_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 TVSLT(0.005)PS(0.71)PT(0.139)T(0.139)QVET(0.007)PDLVDHDNTSPLFR 82.336 0.0030864 191730000 64094 57982 61581 87320 103720 63536 82859 74162 56917 112480 TRUE FALSE FALSE 78351.48918 64762.49052 84362.3745 92090.07049 93393.27262 66862.64671 65155.49775 55973.65322 68339.71983 84440.80604 0.927886562 0.766957275 0.999071165 1.090587298 1.10602062 0.791828618 0.771611509 0.662874454 0.809321027 1 16.36565273 -6.357195235 8.973950405 0.783055007 0.973648146 0.335280654 0.117909797 0.423203932 36.67263846 0.044158816 0.038910779 4.39E-07 6.357195235 0.190593138 TVSLTPSPTTQVETPDLVDHDNT(ph)SPLFR ddPTM_HeLa_A485_30min_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 TVSLTPSPTTQVETPDLVDHDNT(0.5)S(0.5)PLFR 229.12 1.22E-38 624720000 266380 390490 405420 345750 409440 349510 452020 406450 303660 513060 TRUE FALSE FALSE 325635.312 436154.4087 555401.7289 364637.447 368674.716 367809.8032 355442.2343 306767.5002 364601.7767 385163.5842 0.84544678 1.132387449 1.441989201 0.946708001 0.957189961 0.954944388 0.922834476 0.796460291 0.946615391 1 18.55511178 -5.485478803 24.99935927 0.923284932 1.148379632 0.308454377 0.142441819 655.3360188 438048.0428 0.040980804 0.060766111 3.27E-06 5.485478803 0.225094699 TVSLTPSPTTQVETPDLVDHDNT(ph)SPLFR ddPTM_HeLa_A486_30min_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 TVSLTPS(0.003)PT(0.003)T(0.003)QVET(0.046)PDLVDHDNT(0.472)S(0.472)PLFR 107.51 0.00045864 895000000 101820 106060 61598 38836 123820 101460 116650 137690 88267 143500 TRUE FALSE FALSE 94682.9438 97655.41934 85450.39525 90412.17066 108289.341 88942.89677 87462.9362 106340.9928 95918.05463 107566.666 0.8802257 0.907859498 0.794394755 0.840522199 1.006718392 0.826863006 0.813104463 0.988605455 0.891707982 1 16.71487154 -7.896965848 0.995610893 0.994306323 0.870849335 0.250922148 0.06540128 0.755744704 1.673696702 0.062893065 0.021415684 1.27E-08 7.896965848 -0.123456988 TVSLTPSPTTQVETPDLVDHDNTS(ph)PLFR ddPTM_HeLa_A485_30min_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 TVSLTPSPTTQVETPDLVDHDNT(0.347)S(0.653)PLFR 239.06 5.60E-50 545660000 205990 266620 230560 256070 277940 213270 351210 276850 184520 326520 TRUE FALSE FALSE 251811.7648 297798.8897 315853.7384 270058.4557 250267.3177 224436.4874 276171.1144 208952.1034 221551.4715 245124.5732 1.027280789 1.214887948 1.288543757 1.101719229 1.020980126 0.915601747 1.126656177 0.852432299 0.903832156 1 17.90315559 -5.732593498 2.610079845 0.962076234 1.181638809 0.515435988 0.092015255 0.221199998 3.083747814 0.030368238 0.039011438 1.85E-06 5.732593498 0.219562576 TVSLTPSPTTQVETPDLVDHDNTS(ph)PLFR ddPTM_HeLa_A486_30min_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 TVSLTPSPTTQVETPDLVDHDNT(0.174)S(0.826)PLFR 223.71 1.50E-38 823090000 121760 157520 122630 56267 162530 127670 155010 155210 127080 181210 TRUE FALSE FALSE 113225.2528 145037.5415 170115.6201 130992.4196 142143.9719 111919.3735 116224.8585 119872.0712 138095.3967 135833.8365 0.833557055 1.067757086 1.252380294 0.964357799 1.046454812 0.823943255 0.85563996 0.882490507 1.016649461 1 17.05148338 -6.237152629 22.58010083 0.90464376 1.043223193 0.208920075 0.112063152 330.6384732 307403.318 0.037927558 0.037897215 5.79E-07 6.237152629 0.138579433 TVSPGSVS(ph)PIHGQGQVVENLK ddPTM_HeLa_A485_30min_R1 3 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 1 0 TVSPGS(0.087)VS(0.913)PIHGQGQVVENLK;TVSPGS(0.414)VS(0.586)PIHGQGQVVENLK;T(0.007)VS(0.033)PGS(0.159)VS(0.801)PIHGQGQVVENLK ;; 349.21 5.78E-128 2624260000 1195430 1264970 1007660 1274230 1646450 1410260 1831320 2088510 1209060 1946490 TRUE FALSE FALSE 1461349.279 1412897.238 1380435.366 1343837.958 1482523.657 1484099.033 1440043.521 1576299.648 1451707.252 1461265.865 1.000057083 0.966899502 0.944684605 0.919639602 1.014547518 1.015625608 0.98547674 1.078722007 0.993458676 1 20.47878726 -5.838172549 9.77437595 1.017326226 0.957582841 0.456952202 0.030263548 0.312478149 37.23847389 0.009490949 0.010772939 1.45E-06 5.838172549 -0.059743385 TVSPGSVS(ph)PIHGQGQVVENLK ddPTM_HeLa_A486_30min_R1 4 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 1 0 T(0.001)VS(0.008)PGS(0.44)VS(0.552)PIHGQGQVVENLK;TVSPGS(0.099)VS(0.901)PIHGQGQVVENLK;TVSPGS(0.263)VS(0.737)PIHGQGQVVENLK;TVSPGS(0.406)VS(0.594)PIHGQGQVVENLK ;;; 309.68 5.51E-102 2850370000 1738690 1789080 1117330 499995 1910280 1845160 2129020 2002430 1503800 2045600 TRUE FALSE FALSE 1616816.81 1647306.785 1549990.099 1164013.628 1670674.87 1617522.919 1596316.678 1546520.402 1634150.595 1533368.445 1.0544216 1.074305911 1.010839961 0.75912194 1.089545618 1.054882096 1.041052255 1.008577166 1.065725984 1 20.54827297 TVSQQS(ph)FDGVSLDSSGPEDR ddPTM_HeLa_A485_30min_R1 1 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 T(0.002)VS(0.01)QQS(0.989)FDGVSLDSSGPEDR 138.75 1.14E-07 105260000 33352 52148 51228 47170 82503 64185 72415 98144 69905 78771 TRUE FALSE FALSE 40771.03734 58246.25497 70179.36897 49746.77766 74288.71163 67545.62735 56942.94367 74074.03012 83934.29229 59134.83937 0.689458833 0.984973589 1.186768574 0.841243135 1.256259633 1.142230673 0.962933937 1.252629261 1.419371274 1 15.85172073 -3.729060528 0.839105063 1.151976134 7.50E-40 0.421478677 0.157642578 5.385775641 1.576359397 0.056754319 7.07134781 0.000186612 3.729060528 -1.151976134 TVSQQS(ph)FDGVSLDSSGPEDR ddPTM_HeLa_A486_30min_R1 2 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 TVSQQS(1)FDGVSLDSSGPEDR;TVSQQS(0.998)FDGVS(0.001)LDSSGPEDR ; 221.86 2.18E-35 164989000 109683 120411 103942 41500 149906 112967 148982 150755 103170 151680 TRUE FALSE FALSE 101994.7881 110869.1938 144191.1261 96614.09729 131103.3917 99030.2801 111705.1278 116431.3775 112112.8587 113698.3407 0.897064878 0.975117078 1.26819024 0.849740609 1.153080958 0.870991428 0.982469288 1.024037613 0.986055363 1 16.79485167 -6.275064079 24.97448314 0.974823014 1.029034966 0.053085835 0.117929623 2907.013134 5328633.498 0.040541283 0.03595592 5.31E-07 6.275064079 0.054211952 TVSS(ph)PIPY(ph)TPSPSSSRPISPGLSYASHTVGFT(ph)PPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 0 T(0.08)VS(0.442)S(0.478)PIPY(0.172)T(0.176)PS(0.553)PS(0.043)S(0.041)S(0.04)RPIS(0.151)PGLS(0.128)Y(0.086)AS(0.101)HT(0.074)VGFT(0.394)PPT(0.015)S(0.014)LT(0.012)R 92.678 3.08E-05 882480000 87942 151970 152580 105980 214940 132070 165160 198060 120190 117960 TRUE FALSE FALSE 107504.3945 169741.5695 209025.6914 111769.419 193539.8189 138984.981 129872.2168 149485.4745 144311.0306 88554.74289 1.213987992 1.916798175 2.360412154 1.262150568 2.185538714 1.569480938 1.466575505 1.688057235 1.629625087 1 16.43428196 -9.409127707 0.374046414 0.803619104 1.790561916 0.273263576 0.347684959 9.826346974 1.447545382 2.851310145 0.262502436 3.90E-10 9.409127707 0.986942811 TVSS(ph)PIPYT(ph)PS(ph)PSSSRPISPGLSY(ph)ASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 4 0 T(0.314)VS(0.339)S(0.352)PIPY(0.482)T(0.501)PS(0.251)PS(0.233)S(0.231)S(0.228)RPIS(0.189)PGLS(0.156)Y(0.224)AS(0.141)HT(0.132)VGFT(0.127)PPT(0.034)S(0.033)LT(0.032)R 48.862 0.01146 99308000 13869 14943 11282 4956 17466 11016 15161 13824 12097 12113 TRUE FALSE FALSE 12896.85472 13758.86226 15650.69254 11537.81846 15275.25142 9656.957922 11367.55744 10676.57698 13145.5777 9079.825958 1.420385675 1.515322245 1.723677592 1.270709209 1.682328658 1.063562007 1.251957636 1.175857007 1.447778599 1 13.14844893 -6.264055637 24.99977987 1.202830024 1.519276622 0.513995557 0.162364732 201.9719697 1929945.097 0.053428242 0.049246074 5.44E-07 6.264055637 0.316446598 TVSS(ph)PIPYT(ph)PSPS(ph)SSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 4 0 T(0.123)VS(0.433)S(0.453)PIPY(0.377)T(0.392)PS(0.395)PS(0.305)S(0.302)S(0.298)RPIS(0.356)PGLS(0.101)Y(0.142)AS(0.09)HT(0.09)VGFT(0.076)PPT(0.023)S(0.022)LT(0.021)R 43.922 0.031322 165600000 11291 18404 16763 8817.1 14752 12702 14177 16180 14352 12001 TRUE FALSE FALSE 13802.644 20556.18771 22964.33127 9298.755847 13283.23908 13367.05708 11147.96813 12211.82963 17232.31476 9009.371562 1.532031829 2.281645014 2.548938193 1.032120363 1.474380204 1.483683627 1.237374667 1.355458541 1.912709964 1 13.13721076 -5.264532986 24.99899946 1.376586631 2.136949014 0.516444119 0.338431617 212.5801672 1717833.862 0.093279868 0.145307809 5.44E-06 5.264532986 0.760362383 TVSS(ph)PIPYTPS(ph)PSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 0 T(0.04)VS(0.338)S(0.622)PIPY(0.005)T(0.008)PS(0.979)PS(0.012)S(0.037)S(0.033)RPIS(0.924)PGLS(0.001)YASHTVGFTPPTSLTR 174.65 7.25E-15 751750000 126160 167890 137890 128350 224370 175820 187000 203450 138420 153760 TRUE FALSE FALSE 154223.8568 187523.2751 188901.2491 135361.4355 202030.935 185025.6633 147045.9224 153553.5685 166199.6243 115430.4617 1.336075889 1.624556224 1.636493922 1.172666499 1.750239338 1.602918853 1.273891832 1.330269031 1.439824651 1 16.81666447 -8.685289922 0.465275464 0.960815599 1.520632978 0.41251712 0.172334085 2.658226709 0.934446925 0.399894589 0.10048289 2.06E-09 8.685289922 0.559817379 TVSS(ph)PIPYTPS(ph)PSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 3 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 0 T(0.022)VS(0.132)S(0.846)PIPY(0.012)T(0.05)PS(0.937)PS(0.071)S(0.063)S(0.239)RPIS(0.626)PGLS(0.001)YAS(0.001)HTVGFTPPTSLTR;T(0.035)VS(0.187)S(0.777)PIPY(0.012)T(0.019)PS(0.925)PS(0.264)S(0.231)S(0.202)RPIS(0.347)PGLS(0.001)YASHTVGFTPPTSLTR;T(0.031)VS(0.19)S(0.779)PIPY(0.019)T(0.019)PS(0.954)PS(0.009)S(0.011)S(0.027)RPIS(0.91)PGLS(0.038)YAS(0.011)HT(0.002)VGFTPPTSLTR ;; 152.12 4.19E-07 1790000000 556342 644710 592180 227613 898110 672056 848919 854596 577824 680900 TRUE FALSE FALSE 517345.2988 593620.8316 821487.9551 529894.5669 785460.6693 589144.5637 636510.4873 660023.1465 627910.2496 510398.2081 1.013611119 1.163054302 1.609503995 1.038198329 1.538917372 1.154284154 1.247086054 1.293153338 1.230235999 1 18.96126374 -8.122533519 6.795137473 1.00000036 1.264056274 0.149678435 0.182209928 6.162077746 341.6347733 0.167516708 0.04339368 7.54E-09 8.122533519 0.264055913 TVSS(ph)PIPYTPSPSSSR ddPTM_HeLa_A486_30min_R1 2 TVSSPIPYTPSPSSSR 16 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 TVS(0.016)S(0.984)PIPYTPSPSSSR;T(0.005)VS(0.357)S(0.638)PIPYTPSPSSSR ; 120.53 6.31E-06 129890000 246704 252526 190323 103058 272476 298240 289386 305160 238898 289820 TRUE FALSE FALSE 229411.3236 232514.9201 264021.1626 239924.2323 238299.5193 261446.1811 216978.562 235681.7296 259605.871 217247.1856 1.055992155 1.070278169 1.215303029 1.104383615 1.096904978 1.203450256 0.998763512 1.084855157 1.194979214 1 17.72897796 -9.748461914 5.668518622 0.999999991 1.113196146 0.207298958 0.066794791 7.65E-09 1.69E-09 0.064173183 0.015564282 1.78E-10 9.748461914 0.113196155 TVSS(ph)PIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 T(0.017)VS(0.126)S(0.857)PIPYT(0.02)PS(0.035)PS(0.013)S(0.011)S(0.01)RPIS(0.911)PGLSYASHTVGFTPPTSLTR;T(0.014)VS(0.119)S(0.867)PIPYTPSPS(0.005)S(0.004)S(0.003)RPIS(0.988)PGLSYASHTVGFTPPTSLTR ; 224.08 1.55E-39 4105700000 623910 893140 923600 503790 1098480 764480 903410 1108300 779180 776430 TRUE FALSE FALSE 762696.627 997584.9537 1265278.074 531310.772 989111.4742 804506.9907 710389.0733 836487.6873 935554.2789 582880.2901 1.30849617 1.711474844 2.170734018 0.911526399 1.696937589 1.380226788 1.218756382 1.435093451 1.605053893 1 19.15284009 -5.261515892 25 1.353074917 1.728358965 0.276937459 0.29985553 9.802991232 3203539.165 0.081351069 0.130042783 5.48E-06 5.261515892 0.375284048 TVSS(ph)PIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 T(0.028)VS(0.148)S(0.824)PIPYTPSPS(0.002)S(0.002)S(0.002)RPIS(0.986)PGLS(0.007)YASHTVGFTPPTSLTR;T(0.028)VS(0.149)S(0.823)PIPYT(0.001)PS(0.041)PS(0.113)S(0.098)S(0.065)RPIS(0.649)PGLS(0.029)YAS(0.004)HTVGFTPPTSLTR ; 146.42 1.71E-09 3936500000 297610 293470 254800 62441 361480 276300 335600 363940 321450 307640 TRUE FALSE FALSE 276749.0759 270214.3684 353465.3838 145365.8036 316139.8077 242212.9152 251629.3304 281078.8068 349313.5448 230604.9416 1.200100371 1.171763131 1.532774542 0.630367253 1.370915148 1.050337055 1.091170591 1.218875904 1.514770423 1 17.8150639 -10.42831706 9.078761972 0.999998783 1.188512555 0.054334377 0.244879986 5.77E-06 3.63E-07 0.226857201 0.055020598 3.73E-11 10.42831706 0.188513772 TVSS(ph)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 T(0.046)VS(0.185)S(0.763)PIPYT(0.001)PS(0.001)PS(0.001)S(0.001)S(0.001)RPIS(0.001)PGLS(0.001)YASHTVGFTPPTSLTR;T(0.027)VS(0.147)S(0.826)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR ; 135.75 2.42E-07 2353000000 50904.1 77505 67238 35024.5 84342 71570 69822 90312 44358.6 68376 TRUE FALSE FALSE 62227.54143 86568.53555 92112.13421 36937.79975 75944.61434 75317.29453 54903.95931 68162.8404 53260.96414 51331.12157 1.212277066 1.686472707 1.794469542 0.719598532 1.479504285 1.467283243 1.069603734 1.327904755 1.037595956 1 15.64754616 -6.465356934 0.27035595 0.964521248 1.599944324 0.19025242 0.285573371 4.609521752 0.821454669 0.509956033 1.02049387 3.42E-07 6.465356934 0.635423076 TVSS(ph)PIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 T(0.01)VS(0.041)S(0.585)PIPY(0.021)T(0.146)PS(0.031)PS(0.031)S(0.031)S(0.031)RPIS(0.031)PGLS(0.031)YAS(0.008)HT(0.001)VGFTPPTSLTR 85.082 8.40E-05 957600000 21484 20354 24499 10072 28270 24673 28481 28153 23777 24271 TRUE FALSE FALSE 19978.08254 18741.07491 33985.66891 23448.12501 24724.11299 21629.09612 21354.75256 21743.17648 25838.0095 18193.38362 1.098096042 1.030103872 1.868023541 1.288827054 1.35896178 1.188844064 1.17376476 1.195114495 1.420187143 1 14.15112626 -6.261844017 23.25541554 1.20641316 1.339943967 0.075815278 0.229377838 43.40962355 2494749.246 0.080900871 0.075795244 5.47E-07 6.261844017 0.133530807 TVSS(ph)PPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_HeLa_A485_30min_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 T(0.02)VS(0.13)S(0.85)PPT(0.523)S(0.476)PRPGSAATVSASTSNIIPPR 76.891 0.0049914 3906000000 136450 171400 177060 133090 176970 180300 189010 195380 167340 173540 TRUE FALSE FALSE 166802.8318 191443.739 242561.8621 140360.3697 159350.2454 189740.2292 148626.4694 147462.7487 200923.6031 130279.6718 1.280344274 1.469482817 1.861855029 1.077377367 1.223139752 1.456407025 1.14082625 1.131893769 1.542248306 1 16.99125246 -5.284810845 24.98867147 1.236164348 1.530453031 0.327471073 0.20479542 929.0963514 993383.7699 0.05720053 0.084900283 5.19E-06 5.284810845 0.294288683 TVSS(ph)PPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_HeLa_A486_30min_R1 2 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 T(0.005)VS(0.141)S(0.853)PPT(0.539)S(0.462)PRPGSAATVSASTSNIIPPR;T(0.038)VS(0.173)S(0.787)PPT(0.523)S(0.478)PRPGSAATVSASTSNIIPPR ; 111.58 0.00023264 1203090000 475880 479880 378050 178503 517070 426010 503680 505920 377500 513240 TRUE FALSE FALSE 442523.2694 441852.5611 524441.0845 415564.005 452214.2591 373453.2176 377653.9366 390733.0602 410222.0039 384721.3634 1.150243557 1.148500196 1.363171205 1.080168778 1.175433189 0.970710891 0.981629752 1.015626106 1.066283401 1 18.55345442 -6.054653442 2.038853659 1.006355496 1.200040722 0.579125211 0.073674975 0.235401665 1.951057915 0.027406949 0.028957331 8.82E-07 6.054653442 0.193685226 TVSS(ph)PPTS(ph)PRPGSAATVSASTSNIIPPR ddPTM_HeLa_A485_30min_R1 2 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 TVS(0.109)S(0.89)PPT(0.189)S(0.811)PRPGSAATVSASTSNIIPPR;T(0.045)VS(0.447)S(0.507)PPT(0.157)S(0.844)PRPGSAATVSASTSNIIPPR ; 151.5 2.90E-09 2211700000 471150 510200 546350 513700 717230 488200 627330 583320 502650 638100 TRUE FALSE FALSE 575955.6921 569863.4519 748467.6005 541762.1302 645820.0629 513761.3971 493295.8207 440259.8554 603527.2444 479033.4134 1.202328848 1.189611071 1.562453849 1.130948521 1.348173311 1.072495953 1.029773304 0.919058761 1.259885485 1 18.86976676 -6.322361295 6.120592914 1.047563402 1.287801968 0.417139514 0.136104699 0.223767031 17.33399558 0.047173618 0.041696616 4.76E-07 6.322361295 0.240238566 TVSS(ph)PPTS(ph)PRPGSAATVSASTSNIIPPR ddPTM_HeLa_A486_30min_R1 2 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 TVS(0.023)S(0.976)PPT(0.187)S(0.813)PRPGSAATVSASTSNIIPPR;TVS(0.114)S(0.885)PPT(0.021)S(0.979)PRPGSAATVSASTSNIIPPR ; 167.16 6.96E-14 8235100000 1628100 1647970 1229190 576070 1653940 1355670 1642310 1656120 1238750 1580510 TRUE FALSE FALSE 1513978.598 1517378.855 1705165.287 1341120.073 1446487.423 1188421.219 1231386.667 1279057.629 1346125.847 1184740.009 1.277899443 1.280769489 1.439273828 1.131995259 1.220932367 1.003107188 1.039372908 1.079610395 1.136220468 1 20.17613906 -5.726657434 1.579651038 1.060397588 1.321775024 0.693414005 0.074854749 0.212134187 1.097697522 0.026675832 0.037290511 1.88E-06 5.726657434 0.261377436 TVSS(ph)PPTSPRPGSAATVSASTSNIIPPR ddPTM_HeLa_A485_30min_R1 3 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 T(0.005)VS(0.054)S(0.717)PPT(0.177)S(0.046)PRPGS(0.001)AATVSASTSNIIPPR;T(0.002)VS(0.115)S(0.493)PPT(0.289)S(0.097)PRPGS(0.003)AATVSASTSNIIPPR;T(0.008)VS(0.047)S(0.906)PPT(0.039)SPRPGSAATVSASTSNIIPPR ;; 139.41 4.43E-07 4242440000 189902 205735 167885 180499 272956 199458 245652 262603 185941 270575 TRUE FALSE FALSE 232145.0447 229793.9186 229992.6478 190359.2033 245779.5422 209901.3125 193166.4434 198199.2025 223257.6531 203125.6321 1.142864356 1.131289617 1.132267973 0.937150085 1.209987827 1.033357092 0.950970301 0.975746884 1.09911118 1 17.63201278 -6.507782019 24.49686556 1.002682802 1.105236615 0.311837044 0.073997672 668.7870531 1085218.213 0.026411284 0.022523685 3.11E-07 6.507782019 0.102553812 TVSS(ph)PPTSPRPGSAATVSASTSNIIPPR ddPTM_HeLa_A486_30min_R1 3 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 TVS(0.147)S(0.801)PPT(0.038)S(0.01)PRPGS(0.004)AATVSASTSNIIPPR;TVS(0.149)S(0.849)PPT(0.001)SPRPGSAATVSASTSNIIPPR;TVS(0.033)S(0.967)PPTSPRPGSAATVSASTSNIIPPR ;; 174.14 1.17E-14 3969380000 399410 426610 347630 164845 469040 402510 447400 444070 351090 429000 TRUE FALSE FALSE 371413.4216 392803.8699 482241.6459 383767.4908 410208.6296 352852.4086 335455.7879 342964.955 381522.7639 321575.6077 1.154980081 1.221497715 1.499621347 1.19339739 1.275621097 1.097261111 1.043163038 1.066514209 1.186416988 1 18.29479845 -6.282914709 4.439822603 1.078374763 1.276147928 0.491398906 0.09682756 0.186191759 9.31329027 0.035134097 0.032136312 5.21E-07 6.282914709 0.197773166 TVSSDGCS(ph)TPSR ddPTM_HeLa_A485_30min_R1 1 TVSSDGCSTPSR 12 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TVSSDGCS(0.498)T(0.498)PS(0.005)R 194.83 1.05E-13 440140000 810000 918860 776570 717520 678180 549230 622850 435250 498770 736600 TRUE FALSE FALSE 990181.7055 1026312.684 1063855.559 756716.3007 610658.018 577986.8335 489773.0093 328504.2551 598868.564 552979.1761 1.790631091 1.85596986 1.923861883 1.368435437 1.104305631 1.045223507 0.88569883 0.594062614 1.082985743 1 19.07686563 -5.614275634 1.470862086 0.88867998 1.882331569 0.89681383 0.137859353 0.115446392 0.513852331 0.050303664 0.079764606 2.43E-06 5.614275634 0.993651588 TVSSDGCS(ph)TPSREEGGCSLASTPATTLHLLQLSGQR ddPTM_HeLa_A485_30min_R1 3 TVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR 36 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.003)VS(0.016)S(0.014)DGCS(0.445)T(0.445)PS(0.078)REEGGCSLASTPATTLHLLQLSGQR;T(0.002)VS(0.01)S(0.008)DGCS(0.481)T(0.481)PS(0.018)REEGGCSLASTPATTLHLLQLSGQR;TVSSDGCS(0.49)T(0.49)PS(0.02)REEGGCSLASTPATTLHLLQLSGQR ;; 237.2 1.96E-51 2847810000 319037 364890 491060 356472 657750 381394 445698 420730 402138 525070 TRUE FALSE FALSE 390005.68 407560.7114 672723.5287 375945.1627 592262.1005 401363.2001 350470.9813 317545.3078 482843.408 394179.7122 0.98941084 1.033946443 1.706641686 0.953740518 1.502517969 1.01822389 0.889114712 0.805585113 1.224932164 1 18.588494 -6.497867201 23.80817413 0.962272785 1.238692195 0.213405814 0.239615664 606.512793 577332.9552 0.08283043 0.07267377 3.18E-07 6.497867201 0.27641941 TVSSDGCS(ph)TPSREEGGCSLASTPATTLHLLQLSGQR ddPTM_HeLa_A486_30min_R1 1 TVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR 36 1 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.042)VS(0.042)S(0.039)DGCS(0.276)T(0.276)PS(0.276)REEGGCS(0.039)LAS(0.007)T(0.001)PATTLHLLQLSGQR 69.489 0.00056838 647580000 151420 159850 193250 43242 236430 204840 227990 195420 161060 176510 TRUE FALSE FALSE 140806.2399 147182.9038 268081.5754 100669.5613 206774.7448 179568.9235 170944.4906 150927.132 175020.8105 132310.7471 1.064208638 1.11240324 2.026151173 0.760857024 1.56279629 1.357175644 1.291992482 1.140701986 1.322801165 1 17.01357073 -8.69390551 0.630998943 0.991316071 1.318298207 0.070944488 0.317351567 6.981957753 4.108188812 0.47779633 0.12424866 2.02E-09 8.69390551 0.326982136 TVSSDGCST(ph)PSR ddPTM_HeLa_A485_30min_R1 1 TVSSDGCSTPSR 12 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TVSSDGCS(0.023)T(0.975)PS(0.002)R 244.26 2.92E-27 648210000 927500 1008800 830210 836920 773640 627640 675790 494740 572490 773260 TRUE FALSE FALSE 1133819.175 1126770.385 1137339.227 882638.8204 696613.6852 660502.2599 531401.9458 373404.2393 687383.4918 580500.5128 1.953175148 1.94103254 1.95923897 1.520478968 1.200022515 1.137815119 0.915420287 0.643245322 1.18412211 1 19.14693782 -5.676037212 1.1987678 0.924460921 1.998889964 0.907426426 0.136715658 0.12589872 0.379097562 0.054840702 0.087852133 2.11E-06 5.676037212 1.074429043 TVSSDGCST(ph)PSR ddPTM_HeLa_A486_30min_R1 2 TVSSDGCSTPSR 12 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TVSSDGCS(0.002)T(0.997)PS(0.001)R;TVSSDGCS(0.003)T(0.986)PS(0.011)R ; 265.34 2.42E-53 742890000 1790350 2163700 1225830 418450 1261370 1580770 1508400 1363840 1511840 1929450 TRUE FALSE FALSE 1664855.71 1992240.532 1700504.205 974172.7473 1103157.213 1385750.669 1130982.366 1053323.404 1642887.508 1446303.161 1.15111116 1.37747091 1.17575917 0.673560546 0.762742724 0.958132919 0.781981535 0.728286733 1.135921951 1 20.46393856 -5.112228094 5.490995284 0.849260936 1.267027953 0.59350044 0.141728878 0.138991384 5.786675621 0.037679203 0.066955053 7.72E-06 5.112228094 0.417767017 TVSSPIPYT(ph)PSPSSSRPIS(ph)PGLSY(ph)ASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 0 T(0.014)VS(0.015)S(0.015)PIPY(0.206)T(0.475)PS(0.272)PS(0.036)S(0.037)S(0.037)RPIS(0.332)PGLS(0.326)Y(0.344)AS(0.313)HT(0.316)VGFT(0.22)PPT(0.014)S(0.014)LT(0.013)R 55.772 0.010658 261030000 30365 47882 42786 24630 66163 46506 48904 53108 37025 39742 TRUE FALSE FALSE 37119.58949 53481.38338 58614.32187 25975.47453 59575.57941 48940.98225 38455.26089 40083.17973 44455.57789 29835.0508 1.244160425 1.792568873 1.964612773 0.870636176 1.996831841 1.640385417 1.288928956 1.343492927 1.490045322 1 14.86472061 -8.486149596 0.43765422 0.959879363 1.600994336 0.196720295 0.327489252 3.452621692 1.266816885 0.647020743 0.211340039 3.26E-09 8.486149596 0.641114973 TVSSPIPYT(ph)PSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 T(0.001)VS(0.002)S(0.007)PIPY(0.203)T(0.362)PS(0.362)PS(0.23)S(0.08)S(0.077)RPIS(0.649)PGLS(0.013)Y(0.008)AS(0.004)HT(0.001)VGFTPPTSLTR 68.349 0.036619 1059800000 61577 84743 85584 53502 90633 72818 86014 94989 57797 98688 TRUE FALSE FALSE 75274.59121 94652.95668 117245.083 56424.67879 81609.26029 76630.63788 67636.40623 71692.79881 69396.32775 74086.89782 1.016031086 1.277593738 1.582534652 0.761601315 1.101534316 1.034334547 0.912933437 0.967685258 0.936688265 1 16.17693081 -5.271126505 24.9999537 0.96503413 1.290607226 0.502156393 0.151773021 551.9837566 1424525.755 0.042716317 0.064268874 5.36E-06 5.271126505 0.325573097 TVSSPIPYT(ph)PSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 TVS(0.001)S(0.003)PIPY(0.014)T(0.522)PS(0.459)PS(0.001)S(0.001)S(0.001)RPIS(0.996)PGLS(0.001)Y(0.001)ASHTVGFTPPTSLTR 149.63 1.21E-08 955410000 187930 206470 187480 29480 246700 177430 226050 223370 184810 181160 TRUE FALSE FALSE 174757.0775 190108.5652 260077.2769 68630.92984 215756.5856 155540.4906 169489.8991 172513.5271 200829.4796 135796.3568 1.286905492 1.399953354 1.915200694 0.505395958 1.58882455 1.145395165 1.24811816 1.27038406 1.478901822 1 17.05108525 -5.186604964 24.99999999 1.206772073 1.520611141 0.208927013 0.314500851 231.8790516 77462.54933 0.081704189 0.141515796 6.51E-06 5.186604964 0.313839068 TVSSPIPYT(ph)PSPSSSRPISPGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 T(0.002)VS(0.037)S(0.201)PIPY(0.001)T(0.705)PS(0.017)PS(0.012)S(0.013)S(0.013)RPISPGLSYASHTVGFTPPTSLTR 134.25 5.76E-07 652920000 46891 56290 64651 18123 72406 44225 70990 75191 63214 48047 TRUE FALSE FALSE 43604.18305 51829.3754 89685.59861 42191.25989 63324.16432 38768.96915 53227.55114 58071.65071 68693.44042 36015.71847 1.210698687 1.439076537 2.490179356 1.17146795 1.758236876 1.076445807 1.477897802 1.612397397 1.907318342 1 15.13633906 TVSSPIPYTPS(ph)PSSSRPIS(ph)PGLSYASHTVGFT(ph)PPTSLTR ddPTM_HeLa_A486_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 3 0 TVS(0.001)S(0.003)PIPY(0.048)T(0.195)PS(0.379)PS(0.132)S(0.143)S(0.154)RPIS(0.625)PGLS(0.136)Y(0.142)AS(0.131)HT(0.232)VGFT(0.661)PPT(0.007)S(0.007)LT(0.006)R 82.19 0.00044721 93132000 31751 39068 34591 11522 51304 35829 39188 39262 26259 35920 TRUE FALSE FALSE 29525.41886 35972.1094 47985.56158 26823.79829 44868.97393 31408.78226 29382.74791 30322.89968 28535.15126 26925.3982 1.09656387 1.335991733 1.782167202 0.996226614 1.666418212 1.166511337 1.091265121 1.126182033 1.059785673 1 14.71668006 -6.504638284 23.3493824 1.086832534 1.378970938 0.304777118 0.219801455 406.4619509 520308.8128 0.075746929 0.065440645 3.13E-07 6.504638284 0.292138404 TVSSPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFT(ph)PPTSLTR ddPTM_HeLa_A485_30min_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 TVSSPIPY(0.005)T(0.004)PS(0.028)PS(0.022)S(0.024)S(0.025)RPIS(0.507)PGLS(0.101)Y(0.111)AS(0.146)HT(0.032)VGFT(0.875)PPT(0.036)S(0.042)LT(0.042)R 94.406 0.0013403 477570000 41151 44370 62224 36709 57385 42560 60850 52354 31537 36589 TRUE FALSE FALSE 50304.89798 49558.68553 85243.24696 38714.31972 51671.54791 44788.37579 47848.9004 39514.09941 37866.18663 27468.03567 1.831397723 1.804231148 3.103361594 1.409431682 1.881151915 1.630563478 1.741984792 1.438548424 1.378554589 1 14.74546612 -7.107087372 0.438747027 1.004698425 2.164327713 0.411291666 0.404423749 1.050302469 0.496925291 0.445925872 0.379773622 7.81E-08 7.107087372 1.159629288 TVSSPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A485_30min_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 TVSSPIPYT(0.101)PS(0.056)PS(0.04)S(0.028)S(0.028)RPIS(0.742)PGLS(0.004)YASHTVGFTPPTSLTR;TVSSPIPYTPSPSSSRPIS(1)PGLSYASHTVGFTPPTSLTR ; 324.25 3.39E-112 7359200000 525587 867636 813865 359401 1007126 708762 861513 1063093 708411 696796 TRUE FALSE FALSE 642502.0149 969098.4828 1114947.531 379034.1666 906852.9992 745871.6824 677443.7096 802367.7749 850582.5898 523097.5808 1.228264168 1.852615111 2.131433163 0.724595526 1.733621092 1.425874846 1.295061829 1.533877816 1.626049558 1 18.99672057 -12.07015088 0.263228065 3.02E-11 1.558090644 0.140620912 0.364631922 131.4373098 3.216000143 74.37293382 0.492104196 8.51E-13 12.07015088 1.558090644 TVSSPIPYTPSPSSSRPIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_A486_30min_R1 2 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 TVSSPIPYT(0.008)PS(0.001)PS(0.012)S(0.01)S(0.01)RPIS(0.948)PGLS(0.01)YASHTVGFTPPTSLTR;TVSSPIPYT(0.037)PS(0.019)PS(0.059)S(0.059)S(0.059)RPIS(0.752)PGLS(0.013)YASHTVGFTPPTSLTR ; 191.52 5.21E-22 4625600000 201062 172970 173801 34847.4 221607 146437 160402 196178 164300 172596 TRUE FALSE FALSE 186968.5921 159263.2273 241101.4018 81126.50829 193810.9837 128371.0918 120267.723 151512.5519 178541.6563 129376.8382 1.445147329 1.231002624 1.863559236 0.627055889 1.498034628 0.992226225 0.929592381 1.171094873 1.380012518 1 16.98121984 -5.2528168 24.99524313 1.099374898 1.485012971 0.344081484 0.269352255 781.5329961 2265512.497 0.070552287 0.119827418 5.59E-06 5.2528168 0.385638073 TVSSPPT(ph)S(ph)PRPGSAATVSASTSNIIPPR ddPTM_HeLa_A485_30min_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 T(0.009)VS(0.066)S(0.471)PPT(0.594)S(0.858)PRPGS(0.002)AATVSASTSNIIPPR 94.949 0.0016086 4594200000 166340 191180 175590 186100 211680 165460 214750 224850 170350 200860 TRUE FALSE FALSE 203341.7591 213536.838 240548.0479 196266.1718 190604.3959 174123.2298 168866.9082 169705.1849 204537.6825 150789.2986 1.34851585 1.416127272 1.595259413 1.30159218 1.264044583 1.154745273 1.119886555 1.125445815 1.356446939 1 17.20217452 -5.726803895 2.058017014 1.161267993 1.447781086 0.599257034 0.104288782 0.22012305 1.916538773 0.034790146 0.046185658 1.88E-06 5.726803895 0.286513093 TVSSPPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_HeLa_A486_30min_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 T(0.006)VS(0.211)S(0.316)PPT(0.362)S(0.102)PRPGS(0.003)AAT(0.001)VSASTSNIIPPR 90.559 0.0029823 725170000 44690 42292 48114 12096 65646 55355 57060 56491 49399 68867 TRUE FALSE FALSE 41557.46178 38940.6279 66745.02934 28160.0993 57412.06656 48525.86291 42782.98448 43629.23249 53680.94509 51622.25495 0.805029959 0.754337987 1.292950674 0.545503084 1.112157278 0.940018272 0.82877016 0.845163245 1.039879896 1 15.65570554 -1.000002553 0.018587118 1.638410014 2.83E-05 0.037052438 0.194260248 16998.09192 24.41843056 815.4005755 1412.577438 0.099999412 1.000002553 -1.638381716 TVT(ph)PAS(ph)SAKT(ph)SPAK ddPTM_HeLa_A485_30min_R1 2 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.053)VT(0.947)PAS(0.8)S(0.2)AKT(0.609)S(0.391)PAK;T(0.077)VT(0.923)PAS(0.558)S(0.442)AKT(0.666)S(0.334)PAK ; 142.3 6.55E-08 3212900000 4417100 2656700 1551870 9774800 4207100 3672200 7625600 5556800 2246940 11665700 TRUE FALSE FALSE 5399668.656 2967377.955 2125971.292 10308772.57 3788226.352 3864470.714 5996328.265 4193986.087 2697880.248 8757655.681 0.616565535 0.338832453 0.242755752 1.177115537 0.432561691 0.441267715 0.684695595 0.478893695 0.308059639 1 23.0621133 -11.1939154 2.422204824 2.391916077 0.52818722 0.241598009 0.252650981 17491229.96 3335697.962 133809081.3 0.062904625 6.40E-12 11.1939154 -1.863728858 TVT(ph)PAS(ph)SAKTS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.349)VT(0.651)PAS(0.578)S(0.422)AKT(0.232)S(0.768)PAK 154.74 2.53E-08 622090000 517270 328370 198390 1148700 491340 421880 895730 646690 275910 1256200 TRUE FALSE FALSE 632334.9269 366770.0151 271782.7167 1211450.572 442420.4644 443968.9844 704349.9681 488088.2635 331282.6062 943052.4586 0.670519356 0.388917935 0.288194696 1.284605709 0.469136643 0.470778672 0.746883126 0.517562156 0.35128757 1 19.8469785 -10.82534077 2.912054798 1.13011102 0.580286368 0.1800702 0.271039223 67645437.23 53334186.85 61728581.69 0.068045276 1.50E-11 10.82534077 -0.549824652 TVT(ph)PAS(ph)SAKTS(ph)PAK ddPTM_HeLa_A486_30min_R1 3 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.258)VT(0.742)PAS(0.918)S(0.082)AKT(0.138)S(0.862)PAK;T(0.058)VT(0.942)PAS(0.494)S(0.506)AKT(0.18)S(0.82)PAK;T(0.013)VT(0.987)PAS(0.577)S(0.423)AKT(0.384)S(0.616)PAK ;; 267.95 1.73E-41 1632010000 2926600 2884930 903470 3304560 2245440 3928350 6476300 5273090 2172870 7499300 TRUE FALSE FALSE 2721460.453 2656317.64 1253317.78 7693182.683 1963795.977 3443710.118 4855861.241 4072522.518 2361216.121 5621426.468 0.484122752 0.472534446 0.222953691 1.368546352 0.349341219 0.612604316 0.863812996 0.724464251 0.420038603 1 22.42250484 -14 0.052919163 2.277425292 2.88E-17 0.127551274 0.306403886 1136.237465 4.421937098 205.5529627 42.093769 1.00E-14 14 -2.277425292 TVT(ph)PASS(ph)AKTS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.015)VT(0.985)PAS(0.14)S(0.86)AKT(0.063)S(0.937)PAK 153.36 3.20E-08 446070000 804450 472840 317340 1691300 824320 702670 1449200 989660 480800 2240900 TRUE FALSE FALSE 983397.1272 528134.5248 434737.2716 1783691.436 742247.8064 739460.7147 1139566.581 746944.3333 577292.1498 1682284.871 0.584560406 0.313938819 0.258420722 1.060279069 0.441214101 0.439557371 0.677392159 0.444005856 0.343159568 1 20.6819906 -10.47356552 2.887292719 1.01476417 0.509482125 0.313052362 0.21908381 42518739.13 48065544.13 5050121.805 0.057869357 3.36E-11 10.47356552 -0.505282045 TVT(ph)PASS(ph)AKTS(ph)PAK ddPTM_HeLa_A486_30min_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 TVT(1)PAS(0.232)S(0.768)AKT(0.058)S(0.942)PAK 226.57 4.80E-28 1762300000 2779500 2445100 819980 2955900 1997200 3740000 5809500 4703800 2051700 6947000 TRUE FALSE FALSE 2584671.403 2251341.371 1137498.216 6881484.583 1746692.553 3278596.826 4355901.653 3632847.423 2229543.008 5207425.983 0.496343378 0.432332861 0.218437712 1.321475256 0.335423405 0.629600274 0.836478842 0.69762824 0.428146846 1 22.312139 -14 0.055545488 2.301376192 2.30E-14 0.145776442 0.294479013 960.0261031 3.909211576 181.4147878 34.38984837 1.00E-14 14 -2.301376192 TVT(ph)PASSAK ddPTM_HeLa_A485_30min_R1 10 TVTPASSAK 9 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 TVT(1)PASSAK;TVT(0.998)PAS(0.001)SAK;T(0.005)VT(0.995)PASSAK;T(0.042)VT(0.958)PASSAK;T(0.024)VT(0.976)PASSAK;T(0.14)VT(0.859)PAS(0.001)SAK;TVT(1)PASSAK;T(0.064)VT(0.936)PASSAK;TVT(0.998)PAS(0.002)SAK;TVT(1)PASSAK ;;;;;;;;; 179.95 1.83E-07 24119660000 37360090 35305220 28125860 51120690 47852990 37484450 55626030 46810490 34843350 66097130 TRUE FALSE FALSE 45670713.13 39433858.36 38530786.03 53913283.85 43088578.29 39447077.84 43741074.27 35330143.93 41836090.74 49620331.92 0.920403217 0.794711701 0.776512057 1.086515986 0.868365378 0.794978113 0.881515149 0.712009424 0.84312396 1 25.56442805 -6.008667742 24.95681658 0.830652659 0.891283353 0.034736032 0.104034716 1258.460118 3623465.77 0.033351745 0.036006174 9.80E-07 6.008667742 0.060630694 TVT(ph)PASSAK ddPTM_HeLa_A486_30min_R1 7 TVTPASSAK 9 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 TVT(0.973)PAS(0.019)S(0.008)AK;T(0.004)VT(0.996)PASSAK;T(0.006)VT(0.987)PAS(0.006)SAK;T(0.001)VT(0.999)PASSAK;TVT(0.999)PASSAK;T(0.002)VT(0.998)PASSAK;T(0.002)VT(0.998)PASSAK ;;;;;; 187.85 1.00E-07 23044430000 40280350 38522630 23579820 16088110 37298710 45215340 50626550 48041390 34338320 55197970 TRUE FALSE FALSE 37456905.47 35469956.5 32710557.79 37453933.13 32620358 39637131.07 37959251.72 37103414.23 37314793.23 41376039.03 0.905280117 0.857258387 0.790567646 0.90520828 0.788387646 0.957973068 0.917421111 0.896736737 0.901845467 1 25.30229221 -6.275874811 24.99356681 0.927255438 0.849618916 0.456553351 0.046251648 802.3638111 1389212.025 0.01573315 0.013935622 5.30E-07 6.275874811 -0.077636521 TVT(ph)PASSAKT(ph)SPAK ddPTM_HeLa_A485_30min_R1 2 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 2 0 T(0.003)VT(0.997)PASSAKT(0.985)S(0.015)PAK;T(0.067)VT(0.933)PAS(0.007)S(0.004)AKT(0.559)S(0.43)PAK ; 174.87 1.65E-11 238430000 239530 335840 166533 368240 564710 535650 1051400 1379940 258670 629270 TRUE FALSE FALSE 292812.6221 375113.5666 228140.4867 388356.0188 508485.4896 563695.8057 826759.8009 1041507.551 310582.6963 472404.5699 0.61983444 0.79405152 0.482934547 0.822083535 1.076377161 1.193247995 1.750109659 2.204694065 0.65745066 1 18.8496634 -6.034603362 1.626099565 1.482830781 0.653512992 0.385153431 0.401691315 0.350311736 1.874451291 0.158290595 0.170907361 9.23E-07 6.034603362 -0.82931779 TVT(ph)PASSAKT(ph)SPAKQQAPPVR ddPTM_HeLa_A485_30min_R1 1 TVTPASSAKTSPAKQQAPPVR 21 2 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 2 0 T(0.448)VT(0.55)PAS(0.008)S(0.03)AKT(0.506)S(0.457)PAKQQAPPVR 72.425 0.0088402 179570000 43396 120600 34105 39038 144500 225140 345240 995390 68141 76356 TRUE FALSE FALSE 53049.29049 134703.1209 46721.85873 41170.54709 130113.0726 236927.9823 271476.6536 751269.0418 81816.27367 57321.85443 0.925463613 2.34994353 0.81507933 0.718234738 2.269868516 4.133292348 4.736006125 13.10615383 1.427313797 1 15.80679766 -6.415109377 2.013177149 6.040798758 1.298165377 0.217851061 3.163181856 0.406653593 3.259830489 1.304606052 1.077201902 3.84E-07 6.415109377 -4.74263338 TVTAMDVVYALKR ddPTM_HeLa_A485_30min_R1 3 TVTAMDVVYALKR 13 1 P62805 P62805 HIST1H4A Histone H4 0 0 ;; ;; 148.68 1.72E-07 135107000 54518.2 84032 77386.6 72913 117585 70258.7 102481 167258 89600 207221 FALSE FALSE TRUE 66645.5855 93858.81142 106015.1237 76896.05256 105877.8245 73937.33689 80585.09716 126237.7132 107581.8981 155564.6183 0.428410947 0.603342922 0.681486091 0.494302968 0.680603505 0.475283761 0.518016873 0.811480879 0.691557626 1 17.24715444 -7.997056072 0.933600153 0.992072985 0.560951964 0.65091842 0.09786459 0.367759409 0.724381144 0.091792363 0.031687059 1.01E-08 7.997056072 -0.431121021 TVTAMDVVYALKR ddPTM_HeLa_A486_30min_R1 1 TVTAMDVVYALKR 13 1 P62805 P62805 HIST1H4A Histone H4 0 0 130.07 5.23E-05 82007000 55110 52194 41492 24417 121520 54160 62387 68466 43385 47562 FALSE FALSE TRUE 51247.07359 48057.95735 57558.81359 56844.00997 106277.8285 47478.28986 46777.11274 52877.7864 47145.64673 35652.16562 1.437418252 1.34796741 1.614454903 1.594405528 2.980964175 1.33170844 1.312041272 1.483157768 1.322378204 1 15.12170209 -6.459503222 24.9999815 1.319951733 1.789756257 0.246520754 0.440029777 365.5006908 144180.1267 0.16346629 0.144163566 3.47E-07 6.459503222 0.469804524 TVTCVTVVEPEAPPS(ph)PDVLQAATHR ddPTM_HeLa_A485_30min_R1 5 TVTCVTVVEPEAPPSPDVLQAATHR 25 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(0.5)PDVLQAAT(0.5)HR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR ;;;; 223.34 2.59E-38 5630835000 1129709 1433696 1482961 1196610 1831334 1374714 1624960 1779475 1317722 1629021 TRUE FALSE FALSE 1381008.87 1601354.276 2031569.985 1261977.774 1648999.957 1446691.899 1277774.021 1343055.966 1582176.719 1222936.045 1.129256821 1.309434195 1.661223409 1.031924588 1.348394271 1.182966113 1.044841247 1.09822257 1.293752626 1 20.22191753 -6.145947657 1.268501256 1.116790187 1.325535761 0.199508633 0.170343793 0.736400532 2.434080394 0.079800774 0.079554125 7.15E-07 6.145947657 0.208745574 TVTCVTVVEPEAPPS(ph)PDVLQAATHR ddPTM_HeLa_A486_30min_R1 5 TVTCVTVVEPEAPPSPDVLQAATHR 25 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR ;;;; 217.78 3.95E-38 5157300000 1869969 2073420 1755614 657946 2312571 1903422 2113547 2312931 1847783 2026664 TRUE FALSE FALSE 1738893.83 1909114.648 2435434.758 1531731.539 2022506.781 1668597.146 1584715.186 1786327.102 2007950.318 1519174.143 1.144631007 1.256679267 1.603130733 1.008265936 1.331319909 1.098358048 1.043142548 1.175854072 1.321738082 1 20.53485582 -5.296062051 24.99999142 1.149362953 1.327000652 0.252412 0.152995735 898.9843125 649127.6056 0.042866681 0.0635847 5.06E-06 5.296062051 0.177637699 TVTDVSTIDGNAAELVSGRPVSDTTEPS(ph)SPEGK ddPTM_HeLa_A486_30min_R1 1 TVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 33 1 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 TVTDVSTIDGNAAELVSGRPVSDT(0.005)T(0.161)EPS(0.726)S(0.107)PEGK 213.26 3.10E-30 368440000 284850 241960 100400 81875 129160 248570 258080 236050 190340 412110 TRUE FALSE FALSE 264883.486 222786.2084 139277.5688 190609.1377 112959.5484 217903.9607 193505.6543 182306.5679 206838.8245 308914.9736 0.857464055 0.721189413 0.45086053 0.617027836 0.3656655 0.705384909 0.626404256 0.590151283 0.669565551 1 18.23685028 -8.232720638 3.163069508 0.999986086 0.609918534 0.435789096 0.12982171 1.547501966 19.76009827 0.128134048 0.034045853 5.85E-09 8.232720638 -0.390067552 TVTDVSTIDGNAAELVSGRPVSDTTEPSS(ph)PEGK ddPTM_HeLa_A485_30min_R1 1 TVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 33 1 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 TVTDVSTIDGNAAELVSGRPVSDTTEPS(0.185)S(0.814)PEGK 117.66 1.83E-05 362280000 51726 47595 37145 71230 46537 59114 69805 69759 42553 88917 TRUE FALSE FALSE 63232.27025 53160.82123 50886.48123 75121.11454 41903.61288 62209.11763 54890.5915 52650.49587 51092.99678 66751.6283 0.947276821 0.79639737 0.762325692 1.125382503 0.627754168 0.931949066 0.822310899 0.788752233 0.765419482 1 16.02651541 -5.78780611 24.99994053 0.81757866 0.889491296 0.085605974 0.130302322 664.4743001 630025.917 0.039025326 0.04426349 1.63E-06 5.78780611 0.071912636 TVTDVSTIDGNAAELVSGRPVSDTTEPSS(ph)PEGK ddPTM_HeLa_A486_30min_R1 1 TVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 33 1 B1ALY0;Q8IXS6-2;C9JA33;Q8IXS6 B1ALY0 PALM2-AKAP2;PALM2 Paralemmin-2 1 0 TVTDVSTIDGNAAELVSGRPVSDT(0.004)T(0.011)EPS(0.272)S(0.713)PEGK 267.36 1.30E-64 604290000 325270 303140 128620 99977 187840 297050 337870 311960 282700 550710 TRUE FALSE FALSE 302470.2527 279118.0824 178425.1086 232751.5086 164279.3557 260402.9912 253331.3524 240933.518 307204.6636 412808.6315 0.732713005 0.676144007 0.43222233 0.563824229 0.397955234 0.63080801 0.61367746 0.583644574 0.744181784 1 18.65511361 -8.125758896 1.510651751 1.000643685 0.568481748 0.646964707 0.096139123 0.366384388 1.74534857 0.096135061 0.028149052 7.49E-09 8.125758896 -0.432161937 TVTELVTK(ac)K ddPTM_HeLa_A485_30min_R1 2 TVTELVTKK 9 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 1 ; TVTELVTK(1)K;TVTELVTK(1)K 207.68 9.42E-12 88487000 95615 99988 90653 111791 142256 109267 130195 145220 97020 162959 FALSE TRUE FALSE 116884.2269 111680.7268 124189.3171 117897.8593 128092.4931 114988.0512 102377.7747 109604.5673 116491.0241 122336.3203 0.955433567 0.912899182 1.015146743 0.963719188 1.047052035 0.939933871 0.836855109 0.895928266 0.952219453 1 16.90049326 -6.519170304 24.99584693 0.909123265 0.97807516 0.206869192 0.05158625 211.1172776 1423004.01 0.019373609 0.015341613 3.03E-07 6.519170304 0.068951895 TVTELVTK(ac)K ddPTM_HeLa_A486_30min_R1 2 TVTELVTKK 9 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 1 ; TVTELVTK(1)K;TVTELVTK(1)K 237.61 1.81E-23 80224000 175378 178324 120407 62802 193696 182959 200754 199695 156251 221254 FALSE TRUE FALSE 163084.9079 164192.9568 167031.815 146206.2298 169400.8415 160387.3788 150523.2258 154228.8078 169794.9625 165850.5583 0.983324443 0.990005451 1.007122416 0.881554041 1.02140652 0.967059625 0.907583474 0.929926371 1.023782882 1 17.33952434 TVTESRPLS(ph)VPVK ddPTM_HeLa_A486_30min_R1 1 TVTESRPLSVPVK 13 1 Q7Z7G8-3;Q7Z7G8-2;Q7Z7G8-6;Q7Z7G8 Q7Z7G8-3 VPS13B Vacuolar protein sorting-associated protein 13B 1 0 TVTES(0.001)RPLS(0.999)VPVK 56.407 0.0071815 0 96813 86843 59358 36021 102380 119860 116300 114800 82347 133350 TRUE FALSE FALSE 90026.90864 79961.2444 82343.00726 83858.7084 89538.54574 105072.8918 87200.5099 88662.54607 89484.90426 99958.29204 0.900644727 0.799946085 0.823773652 0.838936988 0.89575906 1.051167339 0.872368946 0.886995408 0.895222422 1 16.60903863 -5.887007097 4.353151896 0.933783622 0.836973009 0.409252573 0.056087607 0.233195765 7.767330314 0.018191033 0.02087729 1.30E-06 5.887007097 -0.096810614 TVTIVVR ddPTM_HeLa_A485_30min_R1 2 TVTIVVR 7 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ; ; 119.56 0.010694 105054000 119015 136516 137072 129247 190491 131124 171607 185261 136965 187255 FALSE FALSE TRUE 145489.4762 152480.3587 187780.6368 136307.4363 171525.0472 137989.4499 134941.7625 139825.4493 164452.6192 140575.7747 1.034954113 1.084684463 1.335796564 0.969636743 1.220160782 0.981601917 0.959921885 0.994662484 1.16985035 1 17.10098847 -6.2803425 24.9258544 1.017043389 1.129211994 0.200006751 0.107675763 1302.950501 1718078.925 0.037364998 0.033002023 5.24E-07 6.2803425 0.112168605 TVTIVVR ddPTM_HeLa_A486_30min_R1 1 TVTIVVR 7 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 117.6 0.012567 34341000 42592 43116 36580 15900 53050 38303 49980 50466 41842 47573 FALSE FALSE TRUE 39606.52075 39699.33113 50744.75565 37016.00354 46395.97433 33577.5653 37474.47537 38975.99347 45468.89825 35660.41115 1.110657995 1.113260612 1.422999736 1.03801393 1.301049899 0.941592209 1.050870536 1.092976559 1.275052552 1 15.12203572 -6.252482301 24.99449293 1.076582664 1.196234482 0.19026363 0.128863497 1210.262766 3377206.974 0.042410467 0.041805076 5.59E-07 6.252482301 0.119651818 TVTNAVVTVPAYFNDSQR ddPTM_HeLa_A485_30min_R1 2 TVTNAVVTVPAYFNDSQR 18 0 P11142;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 313.31 4.63E-86 93772000 86998 110046 111791 97012 145964 108421 150658 161528 101830 144918 FALSE FALSE TRUE 106350.405 122914.9224 153147.1429 102311.5199 131431.3116 114097.7559 118468.6875 121913.0047 122266.347 108792.6096 0.977551741 1.129809487 1.407698036 0.940427114 1.20809044 1.048763848 1.088940581 1.120600059 1.12384791 1 16.73122103 TVTNAVVTVPAYFNDSQR ddPTM_HeLa_A486_30min_R1 2 TVTNAVVTVPAYFNDSQR 18 0 P11142;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 249.3 5.42E-46 72660000 80819 91686 71110 29847 103855 84279 93786 102186 83635 105128 FALSE FALSE TRUE 75154.00545 84420.46745 98645.69639 69485.32438 90828.53749 73881.51387 70319.75083 78920.4785 90884.54914 78803.26453 0.953691524 1.071281348 1.251797079 0.881756927 1.152598665 0.937543823 0.892345657 1.001487425 1.153309443 1 16.26596778 -6.280900112 24.55271641 0.990493266 1.063234015 0.075600604 0.113003223 1778.724965 2244126.032 0.040022788 0.035353077 5.24E-07 6.280900112 0.072740749 TVTPAK(ac)AVTTPGKK ddPTM_HeLa_A485_30min_R1 1 TVTPAKAVTTPGKK 14 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 TVTPAK(1)AVTTPGKK 139.6 5.90E-05 30663000 23660 25758 16817 29892 34853 47109 82214 109650 66338 131500 FALSE TRUE FALSE 28923.08537 28770.17404 23038.30811 31524.92427 31382.91294 49575.5544 64648.30727 82758.16558 79651.42811 98719.47008 0.292982583 0.291433635 0.233371473 0.319338467 0.317899933 0.502186188 0.654868864 0.83831655 0.806846188 1 16.59104703 -6.879776331 0.876739626 0.949744548 0.262405034 0.977589896 0.039585128 0.077598827 0.113737615 0.031535212 0.016819775 1.32E-07 6.879776331 -0.687339514 down TVTPAK(ac)AVTTPGKK ddPTM_HeLa_A486_30min_R1 1 TVTPAKAVTTPGKK 14 2 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 TVTPAK(1)AVTTPGKK 150.59 2.15E-05 51360000 92042 77977 41336 33350 83340 91898 110660 110560 76056 127730 FALSE TRUE FALSE 85590.33111 71797.81853 57342.40622 77640.48542 72886.72009 80560.55911 82971.69756 85387.90151 82648.59532 95745.57662 0.893935095 0.749881311 0.598903973 0.81090415 0.761254177 0.841402412 0.866585178 0.89182085 0.863210586 1 16.54691822 -7.295617859 0.540306149 0.9841069 0.745524875 0.490281514 0.072894911 0.718059713 0.469999095 0.075873473 0.046802361 5.06E-08 7.295617859 -0.238582025 TVTPAS(ph)SAKTS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 2 0 TVT(0.001)PAS(0.88)S(0.132)AKT(0.453)S(0.535)PAK 73.156 0.0044718 0 114830 111720 87613 202130 139660 127350 205720 186720 91841 278540 TRUE FALSE FALSE 140373.5373 124784.6822 120024.6946 213171.8501 125754.96 134017.8491 161766.2414 140926.6272 110272.6463 209105.1041 0.671306126 0.596755793 0.57399218 1.019448334 0.601395937 0.640911419 0.773612113 0.673951159 0.527355115 1 17.67386875 -10.35362328 3.182702906 1.00280051 0.679889749 0.353258592 0.131630474 64463017.46 86337222.56 1685979.843 0.033218499 4.43E-11 10.35362328 -0.322910762 TVTPAS(ph)SAKTS(ph)PAK ddPTM_HeLa_A486_30min_R1 2 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 2 0 T(0.003)VT(0.003)PAS(0.495)S(0.499)AKT(0.456)S(0.544)PAK;TVT(0.003)PAS(0.498)S(0.498)AKT(0.02)S(0.98)PAK ; 137.73 7.41E-06 502540000 1092550 945870 341920 984340 841120 1396470 2179600 1814050 813880 2725700 TRUE FALSE FALSE 1015967.887 870915.8164 474320.5809 2291593.266 735618.8865 1224187.73 1634241.027 1401030.415 884427.7737 2043166.979 0.497251521 0.426257778 0.23214969 1.121588832 0.360038555 0.599161861 0.799856812 0.685715084 0.43287102 1 20.96237568 -14 0.070559811 2.284004464 0.112871113 0.230713708 0.238355046 476.4787914 2.413483365 101.972019 12.47418976 1.00E-14 14 -2.171133351 TVTPASS(ph)AKT(ph)SPAK ddPTM_HeLa_A486_30min_R1 2 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 2 0 TVTPAS(0.071)S(0.929)AKT(0.881)S(0.118)PAK;TVTPAS(0.08)S(0.919)AKT(0.568)S(0.432)PAK ; 130.72 0.00022653 65207000 404580 337440 139329 320610 322220 473820 694000 610620 279820 871880 TRUE FALSE FALSE 376221.0313 310700.0255 193280.9202 746396.2827 281804.163 415364.9058 520353.8596 471595.1557 304075.0229 653555.573 0.575652702 0.47539955 0.295737544 1.142054805 0.431186229 0.635546422 0.796189155 0.721583864 0.465262688 1 19.31795039 -14 0.115821403 2.114551195 0.438893383 0.204620309 0.224682837 266.211807 2.017330438 71.39454965 2.412097835 1.00E-14 14 -1.675657813 TVTPASS(ph)AKTS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 2 0 TVTPAS(0.024)S(0.976)AKT(0.055)S(0.945)PAK 172.42 1.16E-11 68487000 136770 135090 94948 225720 186700 156850 241620 210610 117870 341000 TRUE FALSE FALSE 167194.0146 150887.6004 130073.2163 238050.512 168111.4925 165062.4235 189995.9131 158957.5673 141525.4278 255994.9756 0.653114438 0.589416257 0.508108474 0.929903063 0.656698406 0.644787747 0.742186102 0.620940184 0.552844553 1 17.96575597 -11.01001332 2.907613003 1.365277536 0.658412879 0.469227623 0.109928319 75705486.99 80041068.7 184476684.6 0.028638798 9.77E-12 11.01001332 -0.706864657 TVTPASSAKTS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 TVTPAS(0.001)S(0.001)AKT(0.252)S(0.745)PAK 67.645 0.0057215 203120000 61821 161070 66419 48058 209810 328250 520630 1339500 92644 123600 TRUE FALSE FALSE 75572.86817 179905.7354 90990.15203 50683.28685 188920.5797 345436.6624 409393.1473 1010985.525 111236.801 92788.79469 0.814461147 1.938873503 0.980615734 0.546222063 2.036027953 3.722827348 4.412096835 10.89555617 1.198817178 1 16.50166297 -6.362622746 2.10406781 5.152279431 1.1469224 0.234847137 2.601184203 0.385121601 3.352559421 1.037584939 0.890824158 4.34E-07 6.362622746 -4.005357031 TVVRQS(ph)PR ddPTM_HeLa_A485_30min_R1 2 TVVRQSPR 8 1 Q03164-2;Q03164;Q03164-3;E9PR05 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 T(0.001)VVRQS(0.999)PR;T(0.005)VVRQS(0.995)PR ; 65.5 0.011041 309730000 174013 331940 333310 208430 495870 229650 326250 525820 354360 485580 TRUE FALSE FALSE 212721.5915 370757.4955 456615.2392 219816.0031 446499.4417 241674.1189 256544.0223 396861.8205 425476.8016 364533.8424 0.583544151 1.017072909 1.252600406 0.60300575 1.224850452 0.662967579 0.703759137 1.088683064 1.167180525 1 18.47569323 -7.379436097 9.83442605 1.098007827 0.881001231 0.158291679 0.231074778 0.760941748 59.29591252 0.124979275 0.059884162 4.17E-08 7.379436097 -0.217006596 TVVRQS(ph)PR ddPTM_HeLa_A486_30min_R1 2 TVVRQSPR 8 1 Q03164-2;Q03164;Q03164-3;E9PR05 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 T(0.003)VVRQS(0.997)PR;T(0.001)VVRQS(0.999)PR ; 67.726 0.0089957 208111000 371620 330710 325340 107242 396310 319450 385890 367530 241331 353950 TRUE FALSE FALSE 345571.357 304503.3352 451320.3609 249664.7957 346601.1044 280039.5069 289336.2405 283851.4421 262249.7654 265318.6162 1.302476856 1.147689294 1.701050486 0.940999917 1.306358029 1.055483822 1.090523706 1.069851208 0.988433338 1 18.01736638 -5.963028054 0.921572524 1.028698677 1.33477032 0.327873683 0.176117293 0.697213258 1.292737501 0.090912844 0.115198048 1.09E-06 5.963028054 0.306071643 TVVTGIEMFHK ddPTM_HeLa_A486_30min_R1 1 TVVTGIEMFHK 11 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 122.51 0.00077228 15180000 19416 25625 21008 9356.6 28745 26183 30560 29626 26936 30298 FALSE FALSE TRUE 18055.03866 23594.38168 29142.86021 21782.63766 25139.53406 22952.80767 22913.56477 22880.80653 29270.83417 22711.18359 0.794984488 1.038888245 1.283194251 0.959115035 1.106923114 1.010638991 1.00891108 1.007468697 1.288829094 1 14.47111527 -4.282441286 4.630157492 1.079331903 0.781908765 0.375204378 0.110554855 0.17702734 9.764124161 0.026888837 0.162386829 5.22E-05 4.282441286 -0.297423138 TVWDWELMNDIKPIWQRPSK ddPTM_HeLa_A485_30min_R1 1 TVWDWELMNDIKPIWQRPSK 20 2 P14625 P14625 HSP90B1 Endoplasmin 0 0 269.23 7.21E-59 23516000 23323 21874 17217 24172 25179 22832 32515 36799 22531 33655 FALSE FALSE TRUE 28511.12089 24431.97402 23586.28476 25492.45515 22672.09035 24027.44822 25567.90463 27773.98755 27052.76503 25265.42787 1.128463805 0.967012082 0.93353989 1.008985689 0.897356279 0.951001041 1.011971962 1.099288233 1.070742406 1 14.62487699 -7.028080323 5.517970118 1.063061857 0.975953224 0.225314708 0.061964982 0.249128215 22.30709179 0.029063339 0.017337654 9.37E-08 7.028080323 -0.087108633 TVWDWELMNDIKPIWQRPSK ddPTM_HeLa_A486_30min_R1 1 TVWDWELMNDIKPIWQRPSK 20 2 P14625 P14625 HSP90B1 Endoplasmin 0 0 87.486 0.00038722 7130500 24604 25600 16345 11147 27646 26076 32120 31830 22733 29895 FALSE FALSE TRUE 22879.38666 23571.36277 22674.22173 25950.77934 24178.38089 22859.00824 24083.23627 24583.00384 24703.51474 22409.09742 1.020986532 1.051865781 1.011831102 1.158046612 1.078953804 1.020077151 1.074708 1.097009995 1.102387762 1 14.45179692 TVYFAEEVQCEGNSFHK ddPTM_HeLa_A486_30min_R1 1 TVYFAEEVQCEGNSFHK 17 0 P21291;E9PS42 P21291 CSRP1 Cysteine and glycine-rich protein 1 0 0 134.08 3.01E-05 80096000 80247 105660 98952 7748 133050 63927 51983 72082 95130 29556 FALSE FALSE TRUE 74622.0997 97287.11679 137268.8644 18037.73556 116361.6284 56040.3367 38976.30358 55670.50214 103375.945 22154.98522 3.368185487 4.391206576 6.195845452 0.81416148 5.252164566 2.529468476 1.759256582 2.512775413 4.666035385 1 14.43534374 -5.25393807 24.99968217 2.777302103 4.625691745 0.274504238 1.48237937 831.7014064 2771811.954 0.394550246 0.666499574 5.57E-06 5.25393807 1.848389642 TVYSVFGFSFK ddPTM_HeLa_A485_30min_R1 2 TVYSVFGFSFK 11 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 239.93 3.57E-27 30548000 28786 21842 21568 42439 40898 21080 36158 23496 19516.1 58197 FALSE FALSE TRUE 35189.34639 24396.2319 29546.90072 44757.33511 36826.05152 22183.7162 28432.54792 17733.56916 23432.80226 43689.55894 0.805440642 0.558399592 0.676292035 1.024440077 0.842902799 0.507757843 0.650785877 0.405899478 0.536347879 1 15.41500092 -6.259437718 24.98891057 0.58494116 0.776753176 0.146877758 0.184743647 304.0932535 3796337.429 0.063027229 0.060064676 5.50E-07 6.259437718 0.191812016 TVYSVFGFSFK ddPTM_HeLa_A486_30min_R1 2 TVYSVFGFSFK 11 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 224.64 2.80E-20 31107000 19086.3 22489 18913.8 13698.4 27973 32376 37631 32583 24047 30028 FALSE FALSE TRUE 17748.44893 20706.88974 26237.72989 31890.56748 24464.3655 28381.7783 28215.32578 25164.56218 26131.41332 22508.79335 0.78851179 0.919946681 1.165665768 1.416804845 1.086880364 1.260919582 1.253524582 1.117988059 1.160942433 1 14.4582011 -4.677214809 3.205548753 1.199231042 0.813123746 0.607581479 0.107568917 0.148102342 2.936151596 0.027647314 0.088832273 2.10E-05 4.677214809 -0.386107296 TWMWWHNFR ddPTM_HeLa_A486_30min_R1 1 TWMWWHNFR 9 0 G3V5L5;G3V580;G3V2X6;H0YJX6;O14744-3;O14744-5;O14744-2;O14744 G3V5L5 PRMT5 "Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed" 0 0 105.4 0.0028056 18828000 6085.2 6484.6 6616.3 4491.2 10621 7155.8 8512.1 9822.2 6111.4 7356.7 FALSE FALSE TRUE 5658.658904 5970.736679 9178.308551 10455.74057 9288.815143 6272.990151 6382.282548 7585.899477 6641.141073 5514.534436 1.026135383 1.082727245 1.664385028 1.896033236 1.68442418 1.137537579 1.15735655 1.375619205 1.204297688 1 12.42902338 -6.28052523 24.56069637 1.197338033 1.483570053 0.238148719 0.262494443 1192.602693 1534699.62 0.105041335 0.092798619 5.24E-07 6.28052523 0.28623202 TWS(ph)PTACGGK ddPTM_HeLa_A485_30min_R1 1 TWSPTACGGK 10 0 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 T(0.003)WS(0.985)PT(0.012)ACGGK 57.836 0.034216 133420000 278910 224290 225520 433320 330650 242920 389230 336090 237770 537700 TRUE FALSE FALSE 340952.5673 250518.7644 308949.2327 456991.1744 297729.325 255638.9156 306067.8308 253663.4005 285488.258 403661.2856 0.844650154 0.620616277 0.765367509 1.132115441 0.737572157 0.633300553 0.758229341 0.628406562 0.707247061 1 18.6227857 -5.971544323 24.99998785 0.718836299 0.833994896 0.073619885 0.153447906 498.5188975 437976.003 0.048293191 0.054758547 1.07E-06 5.971544323 0.115158598 TWS(ph)PTACGGK ddPTM_HeLa_A486_30min_R1 1 TWSPTACGGK 10 0 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 TWS(0.87)PT(0.13)ACGGK 97.299 0.0021214 152600000 546190 551090 337570 266640 475060 689110 652720 646040 517090 680220 TRUE FALSE FALSE 507904.9015 507419.6214 468286.1444 620751.3952 415473.545 604094.6146 489402.5522 498950.795 561911.7775 509888.4845 0.996109771 0.995158033 0.918408944 1.217425798 0.814832179 1.184758301 0.95982272 0.978548859 1.102028766 1 18.95982223 TWS(ph)PTACGGKK ddPTM_HeLa_A485_30min_R1 1 TWSPTACGGKK 11 1 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 T(0.08)WS(0.912)PT(0.009)ACGGKK 48.14 0.031763 402230000 353050 292860 180670 322220 365590 376610 493080 572720 225310 539710 TRUE FALSE FALSE 431584.7545 327107.4295 247507.3513 339822.0627 329190.5759 396328.7173 387729.4299 432259.522 270527.6503 405170.2296 1.065193647 0.807333327 0.610872501 0.838714293 0.812474737 0.978178277 0.95695439 1.066859039 0.667688864 1 18.62816865 -6.250105326 23.11014459 0.939553444 0.814482512 0.121379011 0.141605423 528.6000072 1077814.9 0.047123509 0.046642431 5.62E-07 6.250105326 -0.125070932 TWS(ph)PTACGGKK ddPTM_HeLa_A486_30min_R1 2 TWSPTACGGKK 11 1 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 T(0.001)WS(0.989)PT(0.009)ACGGKK;T(0.002)WS(0.984)PT(0.014)ACGGKK ; 79.466 0.0044092 956020000 801800 731370 372950 362300 669490 813860 999880 972880 518620 1136920 TRUE FALSE FALSE 745597.9605 673413.5776 517366.2279 843452.7096 585516.3215 713454.2279 749699.4483 751376.4618 563574.3992 852227.8319 0.874881027 0.790180222 0.60707502 0.989703314 0.687042009 0.837163727 0.879693693 0.881661492 0.661295464 1 19.70087964 -6.495620143 24.71798424 0.847605093 0.787890454 0.060042966 0.123000271 2174.025259 1971400.414 0.041918597 0.036861861 3.19E-07 6.495620143 -0.059714638 TWS(ph)TDDFFAGLR ddPTM_HeLa_A485_30min_R1 2 TWSTDDFFAGLR 12 0 Q9H6Y2;G3V1J0;Q9H6Y2-2 Q9H6Y2 WDR55 WD repeat-containing protein 55 1 0 TWS(0.976)T(0.024)DDFFAGLR;T(0.001)WS(0.988)T(0.011)DDFFAGLR ; 161.48 3.02E-10 25867000 47423 49891 38373 49822 42273 43040 53445 48746 35633 57399 TRUE FALSE FALSE 57972.08274 55725.31846 52568.76953 52543.6497 38064.15169 45293.50785 42026.03914 36790.96707 42784.21625 43090.48565 1.345356913 1.293216301 1.219962336 1.219379381 0.883353973 1.05112549 0.975297412 0.853807204 0.992892413 1 15.39508174 -5.663439413 4.920888649 0.957917078 1.276247391 0.860669541 0.061378818 0.076143324 3.048073587 0.019119761 0.02474403 2.17E-06 5.663439413 0.318330313 TWS(ph)TDDFFAGLR ddPTM_HeLa_A486_30min_R1 1 TWSTDDFFAGLR 12 0 Q9H6Y2;G3V1J0;Q9H6Y2-2 Q9H6Y2 WDR55 WD repeat-containing protein 55 1 0 T(0.025)WS(0.954)T(0.021)DDFFAGLR 68.44 0.013237 12882000 29867 24745 12874 10831 20690 24741 26912 30091 23989 40426 TRUE FALSE FALSE 27773.47753 22784.11608 17859.15758 25215.11537 18094.86727 21688.70697 20178.33295 23239.93618 26068.38584 30303.06647 0.916523665 0.751874933 0.589351497 0.832097814 0.597129907 0.715726476 0.665884193 0.766916979 0.860255706 1 14.88717617 -7.957762052 1.965935131 0.997897142 0.718822864 0.459378916 0.093876169 0.277170665 2.420490903 0.08812407 0.024874941 1.10E-08 7.957762052 -0.279074278 TWTLCGT(ph)PEYLAPEIILSK ddPTM_HeLa_A485_30min_R1 1 TWTLCGTPEYLAPEIILSK 19 0 A0A087WVC4;B1APG2;B1APF9;B1APG3;A0A0A0MS54;B1APF8;P22694-5;P22694-9;P22694-6;P22694-7;P22694-3;P22612;P22694;P22694-4;P22694-10;P22694-8;P22694-2;K7ERP6;P17612-2;P17612;Q15136 A0A087WVC4;K7ERP6 PRKACB;PRKACG;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha 1 0 T(0.299)WT(0.299)LCGT(0.4)PEY(0.002)LAPEIILSK 103.63 0.0001364 48846000 67041 28769 27215 67776 67786 36434 74650 59119 34382 89883 TRUE FALSE FALSE 81954.03916 32133.28429 37282.96101 71478.43126 61036.98783 38341.6279 58700.41767 44619.97256 41282.15203 67476.82227 1.214550958 0.476212175 0.552529887 1.059303459 0.904562274 0.568219229 0.86993453 0.661263691 0.611797513 1 16.04210441 -6.21967964 24.94038597 0.729052256 0.817195612 0.036554163 0.234079012 2219.884945 1325793.494 0.077787235 0.077786463 6.03E-07 6.21967964 0.088143355 TY(ph)RDLQYVRGMET(ph)LMR ddPTM_HeLa_A486_30min_R1 1 TYRDLQYVRGMETLMR 16 2 K7ELC6;K7EKW2;K7EIS8;O95897 K7ELC6 OLFM2 Noelin-2 2 0 T(0.175)Y(0.794)RDLQY(0.03)VRGMET(1)LMR 49.482 0.037412 230460000 8029.5 14231 14551 9966.3 17874 15336 16640 17490 17662 14247 TRUE FALSE FALSE 7466.673514 13103.28373 20185.53689 23202.05007 15632.07625 13444.00025 12476.496 13507.9088 19192.95638 10679.45847 0.699162185 1.226961439 1.890127383 2.17258676 1.463751772 1.258865352 1.168270473 1.264849603 1.797184421 1 13.38255087 -6.010907126 24.76959609 1.312402559 1.544996201 0.0471427 0.410862157 1599.845482 3633184.137 0.14263849 0.151552252 9.75E-07 6.010907126 0.232593642 TYAGGTAS(ph)ATK ddPTM_HeLa_A486_30min_R1 1 TYAGGTASATK 11 0 P20810-6;P20810-7;P20810-10;P20810-9;P20810-5;A0A0C4DGB5;H0YA91;E9PSG1;F8W7E0;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 TYAGGT(0.031)AS(0.968)AT(0.001)K 117.93 0.00026091 146530000 164070 154240 83129 72650 167580 173120 203980 198830 114520 237380 TRUE FALSE FALSE 152569.5403 142017.4607 115318.7751 169132.8715 146560.5538 151762.2146 152942.0465 153560.7494 124446.6858 177938.5029 0.857428481 0.798126647 0.648082192 0.950513064 0.823658463 0.852891376 0.859521936 0.862998996 0.699380313 1 17.44101919 -5.273491764 24.97394622 0.856081793 0.77090385 0.194438503 0.088667337 1303.788463 2701599.189 0.024261553 0.036305394 5.33E-06 5.273491764 -0.085177943 TYAICGAIR ddPTM_HeLa_A485_30min_R1 2 TYAICGAIR 9 0 Q8WVC2;Q9BYK1;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 0 ; ; 138.83 0.00072722 133574000 50394 63207 64038 59173 89540 51168 76203 86158 50212 76904 FALSE FALSE TRUE 61603.97144 70598.50882 87728.32104 62405.47116 80625.08321 53847.07736 59921.60653 65027.61541 60289.08783 57733.24811 1.06704496 1.222839718 1.51954591 1.08092777 1.396510431 0.932687474 1.037904647 1.12634604 1.044269806 1 15.81711477 -6.266494911 24.95870378 1.036742163 1.260217765 0.425119289 0.133022103 427.5978634 2111004.319 0.045764223 0.041606157 5.41E-07 6.266494911 0.223475602 TYAICGAIR ddPTM_HeLa_A486_30min_R1 2 TYAICGAIR 9 0 Q8WVC2;Q9BYK1;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 0 ; ; 152.47 0.00017115 130628000 41996 48849 39030 16037 54705 42084 50171 48732 39807 49461 FALSE FALSE TRUE 39052.29727 44978.02733 54143.46126 37334.94647 47843.3888 36892.10396 37617.68515 37636.78741 43257.50281 37075.64366 1.053314074 1.213142184 1.460351215 1.006993885 1.290426384 0.995049588 1.014619881 1.015135105 1.166736395 1 15.17818412 -6.26961476 24.83108563 1.037773613 1.208509474 0.307789269 0.124812839 718.8789597 2183445.072 0.043267852 0.038792458 5.38E-07 6.26961476 0.170735861 TYEEGLKHEANNPQLK ddPTM_HeLa_A485_30min_R1 2 TYEEGLKHEANNPQLK 16 1 P31948;P31948-2;F5GXD8;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 ; ; 96.163 0.0013328 19130700 53900 41958 44337 77972 80253 58452 90354 83338 59409 105818 FALSE FALSE TRUE 65889.86905 46864.62311 60739.10132 82231.41292 72262.72953 61512.45634 71049.12978 62899.22483 71331.84137 79439.52004 0.82943438 0.589940915 0.764595522 1.035144886 0.909657177 0.774330664 0.894380149 0.791787574 0.897938977 1 16.27756929 -5.011700305 24.85116061 0.887677479 0.701582773 0.424032337 0.092654535 470.4314969 999191.6497 0.024337793 0.04549346 9.73E-06 5.011700305 -0.186094706 TYEQGPDT(ph)PVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLR ddPTM_HeLa_A485_30min_R1 1 TYEQGPDTPVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLR 43 0 A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433 A0A590UK85 AMPD2 AMP deaminase 2 1 0 T(0.057)Y(0.004)EQGPDT(0.655)PVS(0.277)ADAPVHPPALEQHPY(0.004)EHCEPS(0.002)T(0.002)MPGDLGLGLR 41.883 0.016142 313920000 8416.4 12040 10481 11840 13966 10861 14656 11321 9701.3 15451 TRUE FALSE FALSE 10288.59914 13447.97327 14358.35805 12486.78922 12575.496 11429.66517 11524.62587 8544.506999 11648.26192 11599.35005 0.8869979 1.159373 1.237858844 1.076507663 1.084155228 0.985371173 0.993557899 0.736636705 1.004216777 1 13.50175635 -6.512463147 1.688987462 0.905688857 1.103922228 0.305311319 0.11013398 0.39805525 2.289208845 0.052526462 0.039587156 3.07E-07 6.512463147 0.198233371 TYETFK(ac)SIMK ddPTM_HeLa_A485_30min_R1 1 TYETFKSIMK 10 1 Q2TAM5;E9PKH5;A0A087X0W8;Q04206-2;Q04206-3;Q04206-4;Q04206;H0YCB4 Q2TAM5 RELA Transcription factor p65 0 1 TYETFK(1)SIMK 102.52 0.030517 10843000 19461 18357 20177 31649 37642 20947 31482 29840 22954 50100 FALSE TRUE FALSE 23790.03231 20503.69147 27641.31194 33377.90473 33894.23031 22043.75253 24755.61352 22521.69321 27560.65725 37610.99202 0.632528711 0.545151573 0.734926426 0.887450794 0.901178844 0.586098673 0.658201557 0.598806147 0.732781981 1 15.19886674 -11.36677667 1.747327282 2.319521935 0.698328863 0.385424289 0.114605876 2628572.795 275436.5821 13648061.3 0.033861312 4.30E-12 11.36677667 -1.621193072 TYGGDTGS(ph)PEISFTK ddPTM_HeLa_A485_30min_R1 4 TYGGDTGSPEISFTK 15 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 TYGGDT(0.259)GS(0.74)PEISFTK;TYGGDT(0.01)GS(0.99)PEISFTK;TYGGDT(0.016)GS(0.984)PEISFTK;TYGGDT(0.105)GS(0.882)PEIS(0.013)FTK ;;; 238.17 4.18E-41 1087410000 1474180 1522670 1303580 1642610 2071620 1511490 2292900 2289760 1398780 2415820 TRUE FALSE FALSE 1802106.255 1700733.011 1785828.488 1732341.625 1865362.239 1590629.279 1803003.184 1728192.77 1679502.316 1813600.534 0.993662177 0.937766051 0.98468679 0.955194704 1.028540852 0.877056027 0.994156734 0.952907069 0.926059672 1 20.79042529 -6.225231737 24.99997522 0.949850025 0.976511049 0.124180459 0.039212332 1426.445177 984905.9054 0.012275446 0.012275152 5.95E-07 6.225231737 0.026661024 TYGGDTGS(ph)PEISFTK ddPTM_HeLa_A486_30min_R1 4 TYGGDTGSPEISFTK 15 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 TYGGDT(0.041)GS(0.959)PEISFTK;TYGGDT(0.04)GS(0.96)PEISFTK;TYGGDT(0.016)GS(0.984)PEISFTK;TYGGDT(0.004)GS(0.996)PEISFTK ;;; 294 3.50E-67 999250000 1642480 1540940 912680 635747 1695460 1662950 1922850 1939870 1301940 1900740 TRUE FALSE FALSE 1527350.634 1418830.302 1266094.138 1480051.145 1482799.597 1457792.137 1441732.592 1498203.948 1414793.207 1424782.332 1.071988752 0.995822499 0.888622851 1.038791057 1.04072009 1.023168314 1.011896736 1.051531812 0.992989017 1 20.4423101 TYGVSFFLVK ddPTM_HeLa_A485_30min_R1 2 TYGVSFFLVK 10 0 Q9Y490;Q9Y4G6 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 0 0 ; ; 219.54 1.11E-19 41752000 43110 42083 41181 59690 67516 53826 82860 75710 36285 76341 FALSE FALSE TRUE 52699.67077 47004.24078 56415.56558 62950.71356 60793.86998 56644.24613 65156.2841 57142.00379 43567.06667 57310.59365 0.919545016 0.820166705 0.984382851 1.098413217 1.060778926 0.988373048 1.136897735 0.997058312 0.760192207 1 15.80651422 -4.883522629 5.841571616 1.014798727 0.87145888 0.228458415 0.097552631 0.275620583 12.88546791 0.026242237 0.056198803 1.31E-05 4.883522629 -0.143339847 TYGVSFFLVK ddPTM_HeLa_A486_30min_R1 2 TYGVSFFLVK 10 0 Q9Y490;Q9Y4G6 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 0 0 ; ; 215.38 1.54E-19 17718000 46043 38330.8 31128.8 16939 48571 48202 59781 51691 42979.2 50694 FALSE FALSE TRUE 42815.62347 35293.32781 43182.70502 39434.84805 42478.77227 42255.32732 44823.1615 39922.08771 46704.67166 37999.89244 1.126730123 0.928774413 1.136390191 1.037762097 1.117865592 1.111985446 1.17956022 1.050584229 1.229073786 1 15.21370771 -5.636446371 1.376835074 1.12235668 1.044843779 0.090968931 0.08003405 0.836303307 3.281313357 0.027719621 0.044001476 2.31E-06 5.636446371 -0.077512901 TYKS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 TYKSPLR 7 1 Q6ICC9 Q6ICC9 LDOC1L Protein LDOC1L 1 0 T(0.176)Y(0.001)KS(0.823)PLR 64.297 0.014143 123540000 305970 295160 173870 121050 310470 297610 335950 326720 228310 355680 TRUE FALSE FALSE 284523.083 271770.4466 241197.1204 281810.5175 271527.9576 260893.9041 251891.7567 252332.9882 248100.0946 266615.4129 1.067166672 1.019335093 0.904663079 1.056992596 1.018425584 0.978540217 0.944775675 0.946430611 0.930554209 1 18.02440066 -6.506461764 3.557698743 0.951334686 1.00973855 0.272423403 0.044316157 0.33543208 9.0430155 0.017682586 0.014339507 3.12E-07 6.506461764 0.058403864 TYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDLGAQDGVS(ph)SPAASPGHVVR ddPTM_HeLa_A485_30min_R1 2 TYLLGPDDHLAEALLAPLTQAPEADDPQPGRGDDLGAQDGVSSPAASPGHVVR 53 1 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 TYLLGPDDHLAEALLAPLT(0.001)QAPEADDPQPGRGDDLGAQDGVS(0.48)S(0.48)PAAS(0.039)PGHVVR;TYLLGPDDHLAEALLAPLT(0.007)QAPEADDPQPGRGDDLGAQDGVS(0.493)S(0.493)PAAS(0.007)PGHVVR ; 60.328 0.00084732 72471000 25895 38050 38002 13952.9 47833 30715 38030 39619 29403 26993 TRUE FALSE FALSE 31655.25341 42499.61651 52060.5212 14715.1116 43070.57857 32323.18991 29904.57982 29902.37813 35303.9124 20264.14187 1.562131455 2.097281828 2.569095772 0.72616505 2.125457808 1.595092954 1.475738771 1.475630122 1.742186401 1 14.30664146 -9.979887536 0.103347084 1.18E-10 2.384666467 0.204343155 0.457021801 81.49084562 1.701649628 32.32806984 10.07631952 1.05E-10 9.979887536 2.384666467 TYS(ph)APAINAIQGGSFESPK ddPTM_HeLa_A486_30min_R1 1 TYSAPAINAIQGGSFESPK 19 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 T(0.123)YS(0.877)APAINAIQGGSFESPK 112.56 4.66E-05 42744000 25962 24698 10952 7960.9 16504 22862 28631 25352 16482 23660 TRUE FALSE FALSE 24142.19787 22740.84053 15192.9077 18533.37752 14433.91443 20041.51888 21467.22097 19579.90303 17910.67303 17735.382 1.361244876 1.282230094 0.856643951 1.044994549 0.813848522 1.130030291 1.210417739 1.104002329 1.009883691 1 14.11434278 -4.618637597 6.775942597 1.0295819 1.341505678 0.53552917 0.112674226 0.159335566 9.318925269 0.030739796 0.08289384 2.41E-05 4.618637597 0.311923778 TYS(ph)ATAR ddPTM_HeLa_A485_30min_R1 3 TYSATAR 7 0 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 T(0.155)YS(0.844)AT(0.001)AR;TYS(0.708)AT(0.292)AR;T(0.016)YS(0.983)ATAR ;; 165.72 7.70E-07 886850000 1845390 2120660 1881380 1931480 2769810 1887680 2579430 2296700 1750450 2552410 TRUE FALSE FALSE 2255890.639 2368652.74 2577380.753 2036991.862 2494037.991 1986516.006 2028313.708 1733430.724 2101749.259 1916141.161 1.177309212 1.236157747 1.345089185 1.063069832 1.30159408 1.03672738 1.058540858 0.904646672 1.096865566 1 20.86977242 -6.353597843 5.868732896 1.013152567 1.222614693 0.600120997 0.083806979 0.160269705 8.257890882 0.028815863 0.025341743 4.43E-07 6.353597843 0.209462126 TYS(ph)ATAR ddPTM_HeLa_A486_30min_R1 2 TYSATAR 7 0 Q9Y534;H7C4E7 Q9Y534 CSDC2 Cold shock domain-containing protein C2 1 0 TYS(0.992)AT(0.008)AR;T(0.004)YS(0.995)AT(0.001)AR ; 158.61 5.30E-05 0 3864400 4212000 3188500 1569660 4757600 4332600 4798800 4837800 3521900 4649300 TRUE FALSE FALSE 3593525.516 3878225.78 4423172.591 3654247.806 4160857.445 3798087.863 3598089.483 3736338.548 3827181.128 3485085.018 1.031115596 1.112806649 1.269172077 1.048539071 1.193904144 1.089812112 1.032425167 1.072093946 1.098160047 1 21.73276242 -6.516641925 21.45576465 1.057311972 1.134042348 0.23574613 0.067816109 69.19374207 238050.0249 0.024954903 0.020112785 3.04E-07 6.516641925 0.076730376 TYS(ph)DEANQMR ddPTM_HeLa_A485_30min_R1 1 TYSDEANQMR 10 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 TYS(1)DEANQMR 186.17 1.04E-09 1177900000 888530 1018000 904890 1246700 1445200 1167400 1405600 1426700 1041200 1452500 TRUE FALSE FALSE 1086180.433 1137046.245 1239646.467 1314804.064 1301310.814 1228523.259 1105282.077 1076799.588 1250159.29 1090418.481 0.996113375 1.042761347 1.136853867 1.205779329 1.19340495 1.126653005 1.013631093 0.987510398 1.146494957 1 20.05645049 -6.754135123 24.59682104 1.035868309 1.121977156 0.230268882 0.071303946 216.3918166 728694.7705 0.030223906 0.022913629 1.76E-07 6.754135123 0.086108847 TYS(ph)DEANQMR ddPTM_HeLa_A486_30min_R1 1 TYSDEANQMR 10 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5 RAB11FIP5 Rab11 family-interacting protein 5 1 0 T(0.01)YS(0.99)DEANQMR 89.301 0.0033634 1519100000 466440 444610 734260 111170 998940 474860 490790 584870 518440 543730 TRUE FALSE FALSE 433744.9647 409377.4844 1018585.136 258809.3782 873643.6305 416276.6012 367989.151 451707.8686 563378.7966 407576.4689 1.064205119 1.004418841 2.499126456 0.634995879 2.143508512 1.021346012 0.902871434 1.108277595 1.382265267 1 18.63671124 TYS(ph)FEQPWPNAR ddPTM_HeLa_A485_30min_R1 1 TYSFEQPWPNAR 12 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 TYS(1)FEQPWPNAR 110.38 0.00041983 67192000 58758 59708 47541 77476 92609 65412 92583 79266 68336 123880 TRUE FALSE FALSE 71828.51439 66690.33121 65128.39425 81708.3177 83388.52279 68836.87117 72801.88572 59825.88922 82050.40839 92998.99584 0.772357957 0.717108078 0.700312876 0.878593548 0.896660464 0.740189403 0.782824428 0.643296077 0.882271982 1 16.50492752 -8.000801564 24.99998525 1.000000007 0.769852654 0.514243144 0.07252144 18.69564269 583121.107 0.074124508 0.019138866 9.98E-09 8.000801564 -0.230147353 TYS(ph)FEQPWPNAR ddPTM_HeLa_A486_30min_R1 1 TYSFEQPWPNAR 12 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 T(0.003)YS(0.997)FEQPWPNAR 170.95 1.34E-10 138230000 109520 118850 87942 54475 113190 126600 135360 142140 103550 130090 TRUE FALSE FALSE 101843.2136 109431.8932 121995.4976 126820.553 98992.65475 110981.3792 101491.4963 109777.8249 112525.7974 97514.61726 1.044389205 1.122210149 1.251048315 1.300528645 1.015157087 1.138099931 1.040782389 1.125757635 1.153937743 1 16.57333087 -5.781371482 24.99997564 1.086292239 1.180556327 0.270203316 0.080438466 369.7351707 463740.9366 0.026150319 0.029690779 1.65E-06 5.781371482 0.094264088 TYS(ph)LGSALRPSTSR ddPTM_HeLa_A486_30min_R1 1 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 T(0.072)Y(0.001)S(0.921)LGS(0.006)ALRPSTSR 54.931 0.020351 287710000 50729 63519 53877 39569 80219 72444 77455 96152 50203 68585 TRUE FALSE FALSE 47173.15906 58485.52311 74739.61728 92118.63171 70157.18501 63506.59584 58074.93976 74260.28858 54554.63646 51410.86959 0.917571701 1.137610073 1.453770727 1.791812363 1.364637198 1.23527566 1.129623759 1.444447238 1.061149848 1 15.64978579 -6.363363938 4.51654217 1.195006462 1.353902433 0.096631198 0.237027586 0.672678056 22.85171067 0.093475645 0.081927665 4.33E-07 6.363363938 0.158895971 TYS(ph)LTTPAR ddPTM_HeLa_A485_30min_R1 6 TYSLTTPAR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TYS(0.996)LT(0.004)TPAR;T(0.003)YS(0.983)LT(0.014)T(0.001)PAR;T(0.007)YS(0.912)LT(0.08)TPAR;T(0.002)YS(0.981)LT(0.017)TPAR;TYS(0.975)LT(0.024)TPAR;TYS(0.995)LT(0.004)TPAR ;;;;; 167.73 8.22E-06 6147530000 2567280 2794890 2658250 2908530 3762700 2770820 3773320 3619950 2611870 3865390 TRUE FALSE FALSE 3138362.579 3121728.073 3641647.294 3067415.629 3388072.376 2915895.851 2967119.357 2732151.587 3136048.352 2901819.41 1.081515469 1.075783028 1.25495311 1.057066342 1.167568307 1.004850902 1.022503105 0.941530537 1.080717959 1 21.46852631 -6.27286551 24.55968755 1.007052561 1.127692291 0.478041492 0.061329717 505.2711548 1086042.733 0.020892304 0.018591523 5.34E-07 6.27286551 0.12063973 TYS(ph)LTTPAR ddPTM_HeLa_A486_30min_R1 5 TYSLTTPAR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 T(0.002)YS(0.615)LT(0.38)T(0.003)PAR;T(0.026)YS(0.972)LT(0.002)TPAR;T(0.001)YS(0.875)LT(0.125)TPAR;T(0.001)YS(0.99)LT(0.009)TPAR;T(0.014)YS(0.928)LT(0.057)TPAR ;;;; 179.72 3.83E-08 6499900000 3025310 3092210 2453410 1144797 3310880 3069180 3519120 3487480 2660740 3352200 TRUE FALSE FALSE 2813251.392 2847172.018 3403436.057 2665145.271 2895598.558 2690535.777 2638598.955 2693456.935 2891375.086 2512787.301 1.119574025 1.133073228 1.354446537 1.060633055 1.152345269 1.070737573 1.050068565 1.07190009 1.150664477 1 21.26085713 TYS(ph)SGSSGGSHPSSR ddPTM_HeLa_A485_30min_R1 1 TYSSGSSGGSHPSSR 15 0 H7C3Q7 H7C3Q7 ABI2 1 0 T(0.087)YS(0.501)S(0.41)GS(0.002)SGGSHPSSR 99.891 0.00044111 89577000 13820 26534 31582 8023.8 35153 19453 24470 22675 26350 15385 TRUE FALSE FALSE 16894.21132 29636.92048 43265.49604 8462.119877 31653.04389 20471.529 19241.7846 17113.9207 31638.2033 11549.80264 1.462727273 2.566010988 3.745994402 0.732663591 2.74057011 1.77245704 1.665983844 1.481750055 2.739285189 1 13.49558058 -5.265637156 24.98364752 1.794120491 2.589020856 0.195280809 0.791741146 613.4421062 3650989.605 0.215273483 0.332866205 5.42E-06 5.265637156 0.794900365 TYS(ph)SSGSSGGSHPSSR ddPTM_HeLa_A485_30min_R1 4 TYSSSGSSGGSHPSSR 16 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9 H0Y6B5 ABI2 Abl interactor 2 1 0 T(0.022)YS(0.915)S(0.062)S(0.001)GSSGGSHPSSR;T(0.001)YS(0.919)S(0.076)S(0.005)GSSGGSHPSSR;T(0.111)YS(0.866)S(0.02)S(0.003)GSSGGSHPSSR;TYS(0.852)S(0.145)S(0.003)GSSGGSHPSSR ;;; 281.36 7.05E-59 1483717000 250646 479356 488482 116915.8 606044 281683 393761 357607 356257 232789 TRUE FALSE FALSE 306401.338 535412.5144 669191.8192 123302.6141 545704.1314 296431.4863 309630.7456 269903.3225 427754.5121 174758.9865 1.75327944 3.063719498 3.829226941 0.705558075 3.122609844 1.69623029 1.771758648 1.544431723 2.447682496 1 17.41500712 -5.879457111 0.842628997 1.697139076 2.726022022 0.158295887 0.867423023 1.185163256 1.849186559 0.473348706 0.682673948 1.32E-06 5.879457111 1.028882946 TYS(ph)SSGSSGGSHPSSR ddPTM_HeLa_A486_30min_R1 3 TYSSSGSSGGSHPSSR 16 0 H0Y6B5;B7Z836;Q9NYB9-3;Q9NYB9-2;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-4;Q9NYB9 H0Y6B5 ABI2 Abl interactor 2 1 0 T(0.035)YS(0.883)S(0.082)SGSSGGSHPSSR;T(0.001)YS(0.747)S(0.121)S(0.121)GS(0.005)S(0.005)GGSHPSSR;TYS(0.882)S(0.115)S(0.002)GSSGGSHPSSR ;; 262.68 6.33E-51 568377000 245708 292142 293486 3105.87 400553 164564.7 192489.8 200737 253042 50764.3 TRUE FALSE FALSE 228485.138 268991.604 407131.639 7230.622322 350311.9077 144262.3805 144326.8161 155033.5672 274975.8843 38052.58886 6.004457118 7.068943586 10.69918371 0.190016568 9.205994079 3.791131821 3.792825151 4.074192369 7.226207008 1 15.21570699 -7.470522678 0.156869445 2.00E-11 9.123157827 0.212921276 2.838905723 7.079359717 1.146757242 28.26747902 27.76407235 3.38E-08 7.470522678 9.123157827 TYSAK(ac)LDNAR ddPTM_HeLa_A485_30min_R1 2 TYSAKLDNAR 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; TYSAK(1)LDNAR;TYSAK(1)LDNAR 169.76 1.65E-05 43181000 29444 39425 37705 31993 48450 34517 46208 48513 34277 47269 FALSE TRUE FALSE 35993.71622 44035.4108 51653.64854 33740.69658 43626.14788 36324.25675 36335.28332 36615.11068 41156.07949 35485.70822 1.014315848 1.240933689 1.455618364 0.950824945 1.229400513 1.023630599 1.023941331 1.031826967 1.159793099 1 15.11495048 -5.285705667 24.99252292 1.065293832 1.237353832 0.297167214 0.124575931 954.8341881 983408.2766 0.034930421 0.05183933 5.18E-06 5.285705667 0.17206 TYSAK(ac)LDNAR ddPTM_HeLa_A486_30min_R1 1 TYSAKLDNAR 10 1 P02545;P02545-6;P02545-3;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 TYSAK(1)LDNAR 143.4 0.0029243 21175000 9147.5 10729 10148 3859.3 14038 9036.6 11175 12112 9367.4 9931.1 FALSE TRUE FALSE 8506.307488 9878.794966 14077.57737 8984.645438 12277.22314 7921.756169 8378.896803 9354.362003 10179.37377 7444.287919 1.142662345 1.327030211 1.891057617 1.206918047 1.649213904 1.064138875 1.125547117 1.256582511 1.367407317 1 12.86191814 -6.273219237 24.80190624 1.176447319 1.448647353 0.284684064 0.221817379 962.5871611 2026673.794 0.077889684 0.069228409 5.33E-07 6.273219237 0.272200035 TYSAPAINAIQGGSFES(ph)PKK ddPTM_HeLa_A485_30min_R1 1 TYSAPAINAIQGGSFESPKK 20 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 TYSAPAINAIQGGS(0.042)FES(0.958)PKK 106.11 1.13E-05 0 74208 59143 30635 129510 82952 63462 122840 102360 50545 160570 TRUE FALSE FALSE 90715.31359 66059.25937 41968.16133 136584.8034 74693.00762 66784.77219 96594.23049 77256.04951 60688.91787 120542.8541 0.752556543 0.548014728 0.348159679 1.133080882 0.619638619 0.554033441 0.801326891 0.640901114 0.503463423 1 16.8791866 -10.78075514 2.685682545 1.088258279 0.657314156 0.210655284 0.199928339 84375797.64 62975745.94 48884543.62 0.052256854 1.66E-11 10.78075514 -0.430944123 TYSAPAINAIQGGSFES(ph)PKK ddPTM_HeLa_A486_30min_R1 2 TYSAPAINAIQGGSFESPKK 20 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 TYSAPAINAIQGGS(0.007)FES(0.993)PKK;TYSAPAINAIQGGS(0.001)FES(0.999)PKK ; 196.14 1.99E-20 385560000 220440 181666 71426 187806 154729 261340 358070 286910 177646 502380 TRUE FALSE FALSE 204988.2944 167270.1245 99084.06005 437221.8592 135321.446 229098.5279 268477.0987 221586.8562 193044.4983 376580.7781 0.544340833 0.44418126 0.263115023 1.161030739 0.359342414 0.608364901 0.712933624 0.588417862 0.512624408 1 18.52259984 -14 0.233583119 3.26003849 0.536082306 0.230901472 0.230423886 253.3498093 2.534796035 271.8362737 0.383328685 1.00E-14 14 -2.723956184 TYSDT(ph)DSCSDIPLEDPDRPVHCSK ddPTM_HeLa_A485_30min_R1 1 TYSDTDSCSDIPLEDPDRPVHCSK 24 1 Q9HB20 Q9HB20 PLEKHA3 Pleckstrin homology domain-containing family A member 3 1 0 T(0.249)Y(0.218)S(0.249)DT(0.272)DS(0.01)CS(0.001)DIPLEDPDRPVHCSK 68.942 0.010763 157290000 74792 105700 118700 59046 197700 83822 107140 107800 113680 125750 TRUE FALSE FALSE 91429.22237 118060.6955 162612.0695 62271.53347 178016.2938 88210.79031 84248.66375 81361.88098 136494.5333 94402.83926 0.968500769 1.250605347 1.722533674 0.659636235 1.885709108 0.934408234 0.892437817 0.86185841 1.445873179 1 16.52654263 TYSLGS(ph)ALRPSTSR ddPTM_HeLa_A485_30min_R1 4 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYSLGS(1)ALRPSTSR;TYS(0.001)LGS(0.999)ALRPSTSR;TYSLGS(1)ALRPSTSR;TYSLGS(1)ALRPSTSR ;;; 225.37 3.28E-28 5823600000 699950 771470 758360 747890 1136290 710810 1197350 1274940 663246 886480 TRUE FALSE FALSE 855651.4627 861686.7056 1038908.922 788745.3369 1023156.978 748026.9125 941526.391 962258.966 796353.3885 665496.8505 1.285733302 1.294802079 1.561102688 1.185197701 1.537433238 1.124012701 1.414772122 1.44592565 1.196629838 1 19.34407231 -8.017681651 4.906314223 1.00026953 1.354664192 0.412711952 0.133589754 0.148639811 12.94112063 0.120168754 0.031340596 9.60E-09 8.017681651 0.354394661 TYSLGS(ph)ALRPSTSR ddPTM_HeLa_A486_30min_R1 5 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYSLGS(1)ALRPSTSR;TYSLGS(1)ALRPSTSR;TYS(0.003)LGS(0.988)ALRPS(0.004)T(0.004)S(0.001)R;TYSLGS(1)ALRPSTSR;TYSLGS(1)ALRPSTSR ;;;; 193.41 2.68E-18 6861510000 837715 1014248 1021870 510979 1267406 1108644 1360765 1327476 868840 1042872 TRUE FALSE FALSE 778995.5045 933875.2947 1417565.431 1189584.935 1108436.121 971870.7751 1020287.204 1025238.693 944151.7508 781730.0632 0.996501914 1.194626302 1.81336947 1.521733641 1.417926946 1.243230651 1.305165622 1.311499636 1.207772088 1 19.576311 -8.075676428 0.716783081 1.000174437 1.389220206 0.22907821 0.202461401 1.295362529 1.506778328 0.218755785 0.084694506 8.40E-09 8.075676428 0.389045769 TYSLGSALRPS(ph)TSR ddPTM_HeLa_A485_30min_R1 1 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYSLGSALRPS(0.499)T(0.499)S(0.002)R 176.28 4.92E-13 294770000 86813 108610 93013 81207 108460 101740 130730 112180 84373 125690 TRUE FALSE FALSE 106124.2523 121310.9947 127422.3793 85643.13278 97661.34157 107066.9491 102798.4675 84667.67911 101305.8872 94357.79615 1.124700413 1.285648878 1.350417077 0.90764236 1.035010837 1.134691074 1.089453884 0.897304543 1.07363558 1 16.5258541 -5.258078903 24.99991853 1.023736465 1.256794801 0.600576297 0.087361132 207.0539139 1540349.041 0.024702958 0.040653994 5.52E-06 5.258078903 0.233058336 TYSLGSALRPS(ph)TSR ddPTM_HeLa_A486_30min_R1 3 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYSLGS(0.003)ALRPS(0.981)T(0.014)S(0.001)R;TYSLGSALRPS(0.499)T(0.499)S(0.002)R;TYSLGSALRPS(0.5)T(0.5)SR ;; 188.71 6.26E-18 993540000 347040 296194 234442 154493 297700 315509 427030 400350 259357 435031 TRUE FALSE FALSE 322714.2881 272722.5087 325224.221 359667.5116 260359.6901 276584.7074 320182.5773 309199.0446 281838.2736 326096.406 0.989628472 0.836324791 0.997325377 1.102948407 0.798413246 0.848168524 0.981864784 0.948182926 0.864278994 1 18.31493902 -3.927873969 20.42578791 0.930452274 2.749868793 0.037660123 0.08914328 1619.842696 535934.5681 0.021977428 22568.12185 0.000118066 3.927873969 1.819416518 TYSLGSALRPSTSR ddPTM_HeLa_A485_30min_R1 2 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 246.86 5.21E-31 262000000 91674 105256 101658 94179 131811 95369 140879 147007 100541 140166 FALSE FALSE TRUE 112066.565 117564.7736 139265.5245 99323.7603 118687.434 100362.3734 110779.0508 110953.3028 120718.6565 105225.1958 1.065016456 1.117268281 1.32349979 0.943916137 1.127937403 0.953786521 1.052780657 1.054436648 1.147240978 1 16.68312067 -5.280825347 24.99949424 1.042884852 1.163462227 0.314535837 0.086813268 988.8431304 1275176.586 0.024021526 0.035683315 5.24E-06 5.280825347 0.120577375 TYSLGSALRPSTSR ddPTM_HeLa_A486_30min_R1 2 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 267.93 7.83E-52 108948000 61350 84214 65576 29420 107647 78411 98337 94854 74757 89814 FALSE FALSE TRUE 57049.68181 77540.57594 90968.78339 68491.2468 94144.90949 68737.44804 73732.0425 73257.81485 81236.99695 67323.98981 0.84739009 1.151752535 1.351209036 1.017337906 1.398385772 1.020994867 1.095182307 1.088138345 1.206657496 1 16.03883306 -9.794471724 7.161135183 1.000012293 1.136886642 0.060207629 0.153313912 6.55E-10 0 0.143424266 0.034785494 1.61E-10 9.794471724 0.136874349 TYSS(ph)PGSFK ddPTM_HeLa_A485_30min_R1 1 TYSSPGSFK 9 0 Q8N3Z6 Q8N3Z6 ZCCHC7 Zinc finger CCHC domain-containing protein 7 1 0 TYS(0.002)S(0.996)PGS(0.002)FK 155.53 4.00E-05 296340000 837610 867460 656960 981320 1185900 946050 1327300 1377400 782720 1341100 TRUE FALSE FALSE 1023933.455 968901.9011 899996.8424 1034927.027 1067827.632 995583.7151 1043711.512 1039590.49 939804.7245 1006788.451 1.0170294 0.962368907 0.893928453 1.027948846 1.060627613 0.988870814 1.036674101 1.032580866 0.933467923 1 19.94132914 -5.313455659 24.9988359 1.014969343 0.958234617 0.246884411 0.042651276 439.3822444 211164.5179 0.012074841 0.017909902 4.86E-06 5.313455659 -0.056734726 TYSS(ph)PGSFK ddPTM_HeLa_A486_30min_R1 3 TYSSPGSFK 9 0 Q8N3Z6 Q8N3Z6 ZCCHC7 Zinc finger CCHC domain-containing protein 7 1 0 TYSS(1)PGSFK;TYSS(1)PGSFK;TYS(0.005)S(0.993)PGS(0.003)FK ;; 192.44 1.08E-08 677098000 2922170 2719510 1578600 1118370 2660410 2797890 3403600 3218010 2139790 3220390 TRUE FALSE FALSE 2717340.973 2504006.123 2189876.196 2603621.879 2326716.57 2452714.779 2551983.28 2485339.372 2325268.72 2413983.383 1.12566681 1.037292196 0.907162913 1.078558327 0.963849456 1.016044599 1.05716688 1.029559437 0.96324968 1 21.20298431 -4.328842208 4.044600422 1.00517258 1.129352752 0.381635946 0.047077801 0.211641021 6.141765668 0.0114699 0.064122363 4.69E-05 4.328842208 0.124180172 TYT(ph)HEVVTLWYR ddPTM_HeLa_A485_30min_R1 3 TYTHEVVTLWYR 12 0 G3V5T9;P24941;Q00526;K7EJ83 G3V5T9 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 T(0.251)YT(0.749)HEVVTLWYR;T(0.122)YT(0.878)HEVVTLWYR;T(0.045)YT(0.955)HEVVTLWYR ;; 206.67 3.62E-17 2098860000 1286080 1080900 1105020 1438880 1922070 841780 1466800 1201970 1014740 1848970 TRUE FALSE FALSE 1572164.059 1207301.852 1513812.882 1517482.371 1730701.962 885854.2992 1153406.197 907184.9729 1218389.01 1388055.807 1.1326375 0.869779044 1.090599437 1.093243055 1.246853299 0.638197899 0.830950882 0.653565201 0.877766589 1 20.40463414 -6.264929625 24.99958442 0.780372363 1.075164363 0.54074712 0.131187755 233.8734378 1675159.268 0.044241057 0.04057835 5.43E-07 6.264929625 0.294792001 TYT(ph)HEVVTLWYR ddPTM_HeLa_A486_30min_R1 4 TYTHEVVTLWYR 12 0 G3V5T9;P24941;Q00526;K7EJ83 G3V5T9 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 T(0.017)YT(0.983)HEVVTLWYR;T(0.132)YT(0.868)HEVVTLWYR;T(0.002)YT(0.998)HEVVTLWYR;T(0.029)YT(0.971)HEVVTLWYR ;;; 232.37 8.35E-24 3013230000 1364710 1733700 1261920 1005290 1796970 1799540 2313880 2171050 1237150 1758220 TRUE FALSE FALSE 1269050.876 1596315.298 1750569.219 2340365.925 1571577.267 1577531.051 1734922.75 1676749.309 1344387.158 1317950.268 0.962897392 1.211210572 1.328251348 1.77576194 1.192440492 1.19695795 1.316379527 1.272240197 1.020059095 1 20.3298645 -7.759858479 4.663407603 0.999697221 1.294520941 0.241469045 0.192371187 0.274690418 14.67501483 0.17422672 0.051912562 1.74E-08 7.759858479 0.29482372 TYTVS(ph)PR ddPTM_HeLa_A486_30min_R1 1 TYTVSPR 7 0 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 T(0.001)YT(0.001)VS(0.998)PR 61.602 0.034203 134630000 204230 222000 157840 92240 273540 227870 264590 247000 210560 288670 TRUE FALSE FALSE 189914.5316 204407.9115 218959.8751 214739.3816 239230.0625 199757.7162 198386.7835 190763.492 228811.5103 216385.1531 0.877668957 0.944648506 1.011898792 0.992394249 1.105575217 0.923158144 0.91682253 0.881592333 1.057427033 1 17.72324199 -4.384529303 3.169555984 0.981605871 0.874228822 0.21336628 0.063447144 0.4909636 7.975777211 0.017180718 0.108213607 4.13E-05 4.384529303 -0.107377048 TYWNDSCGEDMEAS(ph)DYELEDETRPAKR ddPTM_HeLa_A486_30min_R1 1 TYWNDSCGEDMEASDYELEDETRPAKR 27 2 P30291;P30291-2 P30291 WEE1 Wee1-like protein kinase 1 0 TYWNDSCGEDMEAS(1)DYELEDETRPAKR 156.43 6.19E-10 189810000 78726 84391 44194 48813 102110 87554 106340 124910 76260 109590 TRUE FALSE FALSE 73207.71394 77703.54981 61307.10036 113639.1309 89302.41166 76752.47766 79732.60725 96470.71977 82870.2782 82147.95069 0.891169084 0.945897605 0.746301032 1.383347118 1.087092385 0.934320053 0.970597642 1.174353334 1.008793007 1 16.32593696 -5.212886726 24.99940459 1.076745547 0.869600122 0.374568661 0.129301247 453.3003175 233400.2263 0.035798351 0.062004445 6.13E-06 5.212886726 -0.207145425 VAAAAGSGPS(ph)PPGS(ph)PGHDR ddPTM_HeLa_A485_30min_R1 2 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 0 VAAAAGS(0.019)GPS(0.981)PPGS(1)PGHDR;VAAAAGSGPS(1)PPGS(1)PGHDR ; 248.52 7.16E-47 607470000 534000 570440 460260 518290 444750 487200 677980 582530 441150 833700 TRUE FALSE FALSE 652786.4577 637147.9958 630529.327 546602.8703 400469.1284 512709.0386 533124.0344 439663.6041 529684.7585 625873.9331 1.042999913 1.018013312 1.007438229 0.873343403 0.639855899 0.819188996 0.851807379 0.702479494 0.846312221 1 19.25551257 -5.353938896 3.520909461 0.795206959 1.024637983 0.515856495 0.091017904 0.174176641 4.061395874 0.02532577 0.039887363 4.43E-06 5.353938896 0.229431024 VAAAAGSGPS(ph)PPGS(ph)PGHDR ddPTM_HeLa_A486_30min_R1 2 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 0 VAAAAGS(0.002)GPS(0.998)PPGS(1)PGHDR;VAAAAGS(0.002)GPS(0.998)PPGS(1)PGHDR ; 180.68 1.02E-17 610380000 800759 912442 742851 224350 873871 861372 804722 788381 945743 1087280 TRUE FALSE FALSE 744629.9292 840136.7729 1030502.801 522298.138 764261.9507 755104.6804 603372.0441 608883.8565 1027720.765 815018.011 0.913636164 1.030819886 1.264392673 0.640842449 0.937724002 0.926488336 0.740317436 0.747080246 1.260979206 1 19.63647242 -5.253816106 24.98624458 0.879662709 1.065736577 0.16501654 0.179804178 1014.992427 3326758.208 0.04827559 0.081618456 5.57E-06 5.253816106 0.186073869 VAAAAGSGPS(ph)PPGS(ph)PGHDRER ddPTM_HeLa_A485_30min_R1 2 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 0 VAAAAGS(0.053)GPS(0.948)PPGS(1)PGHDRER;VAAAAGS(0.186)GPS(0.817)PPGS(0.996)PGHDRER ; 77.543 0.00027138 389700000 178580 248420 272210 218501 377560 273660 443500 486350 214276 364010 TRUE FALSE FALSE 218304.5049 277470.558 372911.8066 230437.1564 339968.8007 287988.4144 348742.6019 367071.8999 257279.2277 273269.0061 0.798863025 1.01537515 1.364632645 0.843261223 1.244081082 1.05386417 1.276187911 1.343262103 0.94148704 1 18.05996231 -5.801563572 24.99991246 1.16249801 1.031884739 0.106213569 0.184440108 368.1260679 229363.8957 0.056918838 0.064540694 1.58E-06 5.801563572 -0.130613272 VAAAAGSGPS(ph)PPGS(ph)PGHDRER ddPTM_HeLa_A486_30min_R1 1 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 0 VAAAAGS(0.001)GPS(0.999)PPGS(1)PGHDRER 83.701 0.0053867 382300000 23371 27591 32066 9805.9 49835 25853 31402 38167 26853 32160 TRUE FALSE FALSE 21732.81359 25404.58868 44482.81396 22828.63076 43584.22961 22663.51971 23544.88746 29477.20728 29180.63966 24106.92667 0.901517389 1.053829425 1.845229571 0.946973916 1.807954626 0.940124804 0.976685572 1.222769193 1.210467019 1 14.55716012 VAAAAGSGPS(ph)PPGSPGHDR ddPTM_HeLa_A485_30min_R1 2 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 0 VAAAAGSGPS(1)PPGSPGHDR;VAAAAGSGPS(1)PPGSPGHDR ; 195.18 3.86E-19 2618400000 943590 1311640 1147110 648980 1290500 1005730 1366820 1463720 1096970 1676750 TRUE FALSE FALSE 1153488.34 1465024.888 1571473.724 684432.1341 1162013.289 1058388.468 1074787.741 1104740.375 1317121.817 1258767.083 0.916363603 1.163857006 1.248422957 0.543732151 0.923136062 0.840813588 0.853841632 0.877636848 1.046358643 1 20.26357993 -5.2277145 24.99994626 0.864665889 1.114978756 0.356498817 0.147730737 671.1312428 497502.7593 0.039299494 0.068063842 5.92E-06 5.2277145 0.250312867 VAAAAGSGPS(ph)PPGSPGHDR ddPTM_HeLa_A486_30min_R1 2 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 0 VAAAAGSGPS(1)PPGSPGHDR;VAAAAGSGPS(1)PPGSPGHDR ; 213.48 1.63E-26 2462600000 667760 726440 716360 71826 828920 609280 637780 659280 771180 493560 TRUE FALSE FALSE 620953.4723 668874.2488 993753.7768 167214.5579 724949.1242 534113.2283 478200.6983 509176.336 838026.5033 369969.3635 1.678391601 1.807917938 2.686043427 0.451968661 1.959484206 1.443668804 1.292541344 1.376266216 2.265124051 1 18.49704628 -5.239886602 24.99833054 1.434963192 2.032497503 0.246980813 0.524072114 1259.192608 1460492.588 0.137265715 0.237487453 5.76E-06 5.239886602 0.597534311 VAAASGHCGAFS(ph)GSDSSR ddPTM_HeLa_A485_30min_R1 1 VAAASGHCGAFSGSDSSR 18 0 Q9NZB2;Q9NZB2-6;A0A494C0Y9 Q9NZB2 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 VAAASGHCGAFS(0.862)GS(0.136)DS(0.001)S(0.001)R 75.773 0.0033892 191250000 78701 149290 153370 40593 134030 96563 94159 108990 109740 62598 TRUE FALSE FALSE 96207.76593 166748.1668 210107.9453 42810.4928 120685.5026 101618.8894 74041.16044 82260.03161 131763.8114 46993.47063 2.047258154 3.54832628 4.471002938 0.910988106 2.568133423 2.162404436 1.575562721 1.750456617 2.803874871 1 15.5201727 -5.264177285 24.99999039 1.890450755 3.374808818 0.439692024 0.789474579 225.9331393 2063015.428 0.216573894 0.338163937 5.44E-06 5.264177285 1.484358062 VAAETQS(ph)PSLFGSTK ddPTM_HeLa_A485_30min_R1 2 VAAETQSPSLFGSTK 15 0 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 1 0 VAAETQS(0.838)PS(0.162)LFGSTK;VAAETQS(0.997)PS(0.003)LFGSTK ; 237.05 4.51E-41 551630000 786700 566260 517720 942260 867980 622480 718760 568630 649430 1148940 TRUE FALSE FALSE 961698.7009 632479.1812 709246.1721 993733.2779 781560.8635 655072.0903 565191.0543 429172.6009 779764.6441 862530.4027 1.114973684 0.733283348 0.822285417 1.152113914 0.906125582 0.759477102 0.655270878 0.497573882 0.904043083 1 19.71821578 -6.271922128 4.022794701 0.721926139 0.940575894 0.203932831 0.172677341 0.312506859 11.99034218 0.061291572 0.056705146 5.35E-07 6.271922128 0.218649755 VAAETQS(ph)PSLFGSTK ddPTM_HeLa_A486_30min_R1 1 VAAETQSPSLFGSTK 15 0 Q9UKX7-2;Q9UKX7 Q9UKX7-2 NUP50 Nuclear pore complex protein Nup50 1 0 VAAETQS(0.993)PS(0.007)LFGSTK 197.49 3.29E-25 259030000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VAAGLQIK ddPTM_HeLa_A485_30min_R1 2 VAAGLQIK 8 0 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 0 ; ; 138.62 0.0009322 99362000 145720 173102 164126 139533 199947 201643 205630 237322 172038 205839 FALSE FALSE TRUE 178134.9113 193344.7731 224843.0373 147155.3345 180039.5746 212200.7157 161695.4707 179118.4074 206564.4486 154527.1255 1.15277438 1.251202807 1.455039279 0.952294518 1.165100134 1.373226319 1.046388912 1.159138933 1.336752029 1 17.23750058 -10.75995927 2.940351099 0.959052454 1.208180672 0.161992433 0.143368726 16505540.89 18207303.76 4898009.916 0.036681346 1.74E-11 10.75995927 0.249128218 VAAGLQIK ddPTM_HeLa_A486_30min_R1 2 VAAGLQIK 8 0 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 0 0 ; ; 172.39 4.36E-05 89267000 113663 145792 133102 42210 172087 125804 123751 135698 115950 131079 FALSE FALSE TRUE 105695.8107 134238.911 184642.659 98267.01318 150502.2438 110283.5816 92787.1909 104802.5277 126000.6394 98255.96522 1.07571902 1.366216399 1.8792005 1.000112441 1.531736455 1.122411055 0.944341554 1.066627634 1.282371397 1 16.58425738 -6.394407558 6.264223535 1.073069457 1.377110587 0.265452466 0.239841941 0.334208549 15.62391023 0.084995166 0.074612183 4.03E-07 6.394407558 0.30404113 VAALFPALRPGGFQAHYR ddPTM_HeLa_A485_30min_R1 2 VAALFPALRPGGFQAHYR 18 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 0 0 ; ; 208.15 4.49E-23 656250000 522100 559390 532630 523460 559450 587990 771060 712090 429620 781080 FALSE FALSE TRUE 638239.3438 624805.7945 729672.0016 552055.2943 503749.1937 618776.2472 606316.732 537448.811 515840.7933 586371.1307 1.088456287 1.065546651 1.244385959 0.941477616 0.859096172 1.055263833 1.034015319 0.916567653 0.879717241 1 19.16145455 -5.286310229 24.88343828 0.955139838 1.126071341 0.550831801 0.073431943 559.895287 560177.5696 0.021596378 0.032047888 5.17E-06 5.286310229 0.170931502 VAALFPALRPGGFQAHYR ddPTM_HeLa_A486_30min_R1 2 VAALFPALRPGGFQAHYR 18 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 0 0 ; ; 204.28 9.25E-23 769860000 413020 591580 546130 161730 631300 573400 631110 597340 616040 726930 FALSE FALSE TRUE 384069.4308 544701.0463 757606.1619 376515.6134 552116.4674 502659.7379 473199.6028 461338.7218 669438.8432 544901.9965 0.704841299 0.999631218 1.390353067 0.69097859 1.013239942 0.922477328 0.868412312 0.846645314 1.228549074 1 19.05563725 -7.757217117 24.99477424 1.114274531 0.939827659 0.127042312 0.192167889 219.125941 1297233.772 0.139986562 0.048664582 1.75E-08 7.757217117 -0.174446871 VAAPQDGS(ph)PR ddPTM_HeLa_A485_30min_R1 2 VAAPQDGSPR 10 0 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 VAAPQDGS(1)PR;VAAPQDGS(1)PR ; 95.273 0.002436 1388310000 421800 433880 458720 472540 566810 447000 479460 422160 496350 565070 TRUE FALSE FALSE 515627.9548 484618.4917 628419.6169 498353.6637 510376.4062 470404.2288 377019.4542 318624.5981 595962.8922 424208.4483 1.215506096 1.142406507 1.48139345 1.174784863 1.203126454 1.108898775 0.888759891 0.751103848 1.404882186 1 18.69441383 -6.344054091 2.406547741 0.992111251 1.254023949 0.272162032 0.177414617 0.377178414 4.283139641 0.069535986 0.060844049 4.53E-07 6.344054091 0.261912698 VAAPQDGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 VAAPQDGSPR 10 0 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 VAAPQDGS(1)PR;VAAPQDGS(1)PR ; 101.72 0.0014352 1320730000 1283460 1601750 1391180 468300 1721510 1378070 1432560 1458630 1220410 1430300 TRUE FALSE FALSE 1193496.082 1474821.497 1929882.153 1090226.067 1505582.163 1208057.735 1074118.336 1126531.791 1326196.121 1072143.57 1.113186811 1.375582093 1.80002213 1.016865741 1.404272902 1.126768623 1.001841885 1.050728486 1.236957585 1 20.03206668 -6.137541948 1.382206291 1.071955356 1.380947024 0.273058348 0.205395859 0.558491951 2.168121309 0.091830262 0.09190007 7.29E-07 6.137541948 0.308991668 VAAQSPPS(ph)PASAEALLPALPLR ddPTM_HeLa_A485_30min_R1 1 VAAQSPPSPASAEALLPALPLR 22 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 VAAQS(0.036)PPS(0.949)PAS(0.015)AEALLPALPLR 59.512 0.021962 22071000 12797 18139 14917 15482 18554 18061 21557 22332 14006 18484 TRUE FALSE FALSE 15643.6485 20260.19826 20435.41905 16327.74246 16706.69861 19006.64603 16951.17085 16855.04198 16816.87573 13876.27897 1.127366244 1.460059884 1.472687245 1.176665768 1.203975406 1.369722104 1.221593403 1.214665835 1.211915367 1 13.76033313 -8.932421904 0.292572946 0.916397768 1.34284447 0.395481125 0.108967218 5.57072641 0.759625199 0.683359579 0.151506052 1.17E-09 8.932421904 0.426446702 VAAQSPPS(ph)PASAEALLPALPLR ddPTM_HeLa_A486_30min_R1 2 VAAQSPPSPASAEALLPALPLR 22 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 VAAQS(0.009)PPS(0.932)PAS(0.059)AEALLPALPLR;VAAQSPPS(0.996)PAS(0.003)AEALLPALPLR ; 135.21 4.00E-11 15011000 25607 39318 38683 12652.3 48942 31909 35483 40668 31561.2 31821 TRUE FALSE FALSE 23812.08153 36202.29849 53662.09357 29455.19381 42803.23799 27972.39201 26604.7781 31408.78418 34296.95023 23852.81448 0.998292321 1.517736975 2.249717475 1.234872884 1.79447327 1.172708237 1.1153727 1.316774765 1.437857585 1 14.54187188 -6.280036911 23.97898166 1.222517913 1.577089237 0.220868635 0.32772795 789.6701618 1018167.897 0.116431055 0.102893838 5.25E-07 6.280036911 0.354571324 VAASGAQDPEKS(ph)PDRLK ddPTM_HeLa_A486_30min_R1 2 VAASGAQDPEKSPDRLK 17 2 Q1MSJ5-2;Q1MSJ5-1;Q1MSJ5 Q1MSJ5-2 CSPP1 Centrosome and spindle pole-associated protein 1 1 0 VAASGAQDPEKS(1)PDRLK;VAAS(0.001)GAQDPEKS(0.999)PDRLK ; 119.27 2.75E-05 925770000 434967 378841 165918 312077 352184 578950 767400 673630 301967 968980 TRUE FALSE FALSE 404478.0595 348820.2594 230165.893 726531.0275 308009.7987 507525.0353 575388.4033 520259.1542 328141.7427 726341.101 0.556870675 0.480243041 0.316884027 1.000261484 0.424056684 0.698742002 0.792173818 0.716273874 0.451773612 1 19.47028769 -14 0.091448278 2.133735594 0.32358927 0.277932594 0.192007126 282.587921 1.787069042 63.81296848 4.285168894 1.00E-14 14 -1.810146324 VADAKGDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_HeLa_A485_30min_R1 6 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR ;;;;; 236.6 1.42E-48 23677500000 4783690 3887469 2973728 8419050 6211270 5119140 9085320 7584680 3949990 11627320 TRUE FALSE FALSE 5847805.337 4342074.683 4073833.734 8878961.383 5592854.15 5387170.255 7144167.162 5724525.338 4742716.762 8728843.109 0.669940479 0.497439882 0.466709469 1.017197958 0.640732578 0.617168872 0.818455215 0.655817187 0.543338527 1 23.05735903 -11.40232102 2.333257575 3.938990273 0.661585931 0.310833006 0.152473578 7978501.432 863226.652 124251220.2 0.0397664 3.96E-12 11.40232102 -3.277404342 VADAKGDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_HeLa_A486_30min_R1 6 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR ;;;;; 285.4 2.85E-75 27172700000 7377090 7058790 3518127 5771230 6845760 8981030 12233330 10562410 5804490 14822470 TRUE FALSE FALSE 6859994.086 6499425.773 4880439.993 13435715.1 5987100.947 7873041.831 9172421.443 8157579.819 6307627.867 11110827.03 0.617415253 0.584963275 0.43925083 1.209245276 0.538852862 0.708591881 0.825539036 0.734200955 0.567701022 1 23.40546287 -14 0.195495082 2.256706189 0.649654818 0.164279588 0.202929437 270.719027 2.665721154 134.1228278 0.516945734 1.00E-14 14 -1.607051371 VADAKGDS(ph)ESEEDEDLEVPVPSR ddPTM_HeLa_A485_30min_R1 2 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 VADAKGDS(0.706)ES(0.294)EEDEDLEVPVPSR;VADAKGDS(0.67)ES(0.33)EEDEDLEVPVPSR ; 201.1 4.63E-29 862010000 496040 459720 334090 743770 571040 578890 794150 840180 376650 1088470 TRUE FALSE FALSE 606382.3867 513480.255 457683.7936 784400.2718 514185.2526 609199.7853 624473.3649 634124.5376 452240.2002 817134.4608 0.742083972 0.628391384 0.5601083 0.959940266 0.629254152 0.745531873 0.764223509 0.776034506 0.553446491 1 19.64021397 -10.68401745 3.122228068 1.029881641 0.71001551 0.369209831 0.114987009 108545402.9 109466385.2 25707720.46 0.027952217 2.07E-11 10.68401745 -0.319866131 VADAKGDS(ph)ESEEDEDLEVPVPSR ddPTM_HeLa_A486_30min_R1 2 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 VADAKGDS(0.966)ES(0.034)EEDEDLEVPVPSR;VADAKGDS(0.8)ES(0.2)EEDEDLEVPVPSR ; 220.91 2.48E-38 908180000 406250 346040 220490 254190 377410 428500 633620 566600 292320 774060 TRUE FALSE FALSE 377773.9729 318618.5301 305869.6329 591767.1661 330071.7186 375636.0267 475081.5743 437597.5488 317658.533 580230.3377 0.651075872 0.549124217 0.527152086 1.019883187 0.568863255 0.647391221 0.818780997 0.754179022 0.547469707 1 19.1462662 -14 0.233856645 2.709157206 0.64751747 0.2950386 0.14709621 219.4480605 2.195458348 178.5000302 0.249916572 1.00E-14 14 -2.061639737 VADMALHYANKYNIMLVR ddPTM_HeLa_A485_30min_R1 4 VADMALHYANKYNIMLVR 18 1 P50990-2;P50990;H7C4C8;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 0 ;;; ;;; 192.24 6.07E-19 84278200 90004 163779 130780 74241 180824 166237 199017 279671 110230 112406 FALSE FALSE TRUE 110025.0793 182931.5294 179160.9642 78296.59784 162820.5276 174940.9123 156495.3921 211081.2487 132352.1499 84385.25288 1.303842503 2.167813962 2.123131212 0.92784693 1.929490309 2.073121858 1.854534848 2.50139973 1.568427485 1 16.36470328 VADMALHYANKYNIMLVR ddPTM_HeLa_A486_30min_R1 4 VADMALHYANKYNIMLVR 18 1 P50990-2;P50990;H7C4C8;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 0 ;;; ;;; 172.24 4.76E-15 72043000 111338 78888.1 77275.2 49129.4 135518 74545.2 111639.8 112863 65333.2 108911 FALSE FALSE TRUE 103533.7812 72636.71965 107198.2269 114375.7261 118520.0688 65348.57114 83706.34123 87166.55868 70996.33438 81638.97671 1.268190579 0.889730893 1.313076563 1.400994117 1.451758383 0.800457989 1.025323254 1.067707634 0.86963773 1 16.31697048 -6.265811171 24.9999337 0.961400672 1.254169621 0.494223465 0.157569405 384.709042 2199937.432 0.058922294 0.053760772 5.42E-07 6.265811171 0.292768948 VADNS(ph)FDAK ddPTM_HeLa_A485_30min_R1 7 VADNSFDAK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK ;;;;;; 224.49 3.40E-12 4847690000 7851640 6407850 4899890 12499530 10236500 7610380 12251450 12064690 6779690 15351610 TRUE FALSE FALSE 9598210.23 7157192.317 6712563.212 13182347.67 9217318.117 8008847.729 9633827.622 9105805.861 8140311.596 11524736.15 0.832835572 0.621028735 0.58244832 1.143830757 0.799785609 0.694926775 0.835926089 0.790109703 0.706333879 1 23.45823039 -11.45739581 2.136701501 3.096855999 0.779109773 0.169792708 0.146878489 6182706.531 431022.5731 62965735.3 0.037668308 3.49E-12 11.45739581 -2.317746226 VADNS(ph)FDAK ddPTM_HeLa_A486_30min_R1 6 VADNSFDAK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK;VADNS(1)FDAK ;;;;; 216.97 6.09E-12 5310480000 7325050 7490740 3760250 3988790 6629630 8566400 10924200 10103700 5839650 11424900 TRUE FALSE FALSE 6811601.822 6897146.482 5216319.503 9286104.702 5798079.987 7509564.665 8190849.616 7803308.072 6345835.564 8564030.676 0.795373356 0.805362188 0.609096312 1.084314741 0.677026999 0.876872696 0.9564246 0.911172363 0.740987019 1 23.02985853 -4.439487067 0.033080003 1.572809699 2.41E-08 0.154451312 0.129331652 979.5906406 5.372496794 100.9268845 158.837262 3.64E-05 4.439487067 -1.572809675 VADNS(ph)FDAKR ddPTM_HeLa_A485_30min_R1 8 VADNSFDAKR 10 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR ;;;;;;; 136.32 2.38E-05 7999160000 3532917 3229927 2534236 4494275 5065827 3781381 5857762 6215840 3407394 6216845 TRUE FALSE FALSE 4318802.198 3607638.866 3471755.355 4739785.863 4561455.477 3979368.262 4606203.295 4691395.494 4091226.721 4667099.954 0.925371696 0.772993701 0.743878509 1.015574106 0.977363999 0.852642605 0.986951927 1.005205704 0.876610049 1 22.15409493 -5.263191964 24.99715095 0.956883726 0.809972541 0.493333798 0.067323868 129.5590793 1847910.342 0.018778752 0.029545354 5.46E-06 5.263191964 -0.146911185 VADNS(ph)FDAKR ddPTM_HeLa_A486_30min_R1 7 VADNSFDAKR 10 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR ;;;;;; 176.58 3.75E-08 10756200000 4693480 4775130 2811294 2355548 5004930 5142470 6541280 6560160 3750190 6654910 TRUE FALSE FALSE 4364491.289 4396731.308 3899902.326 5483834.787 4377165.01 4508044.336 4904582.557 5066554.775 4075259.489 4988477.22 0.874914547 0.881377445 0.781782126 1.099300357 0.877455147 0.903691475 0.98318231 1.015651581 0.816934569 1 22.25016806 -5.226703289 24.99840132 0.952859538 0.849559999 0.293925343 0.07833099 828.5495813 596278.5071 0.020591755 0.03566362 5.93E-06 5.226703289 -0.103299539 VADPDHDHTGFLTEY(ph)VATR ddPTM_HeLa_A485_30min_R1 5 VADPDHDHTGFLTEYVATR 19 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 1 0 VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLT(0.203)EY(0.796)VATR ;;;; 261.98 1.22E-58 3866880000 2150931 2690690 2468240 1898230 2313540 2142031 2254060 2075549 1488556 1950912 TRUE FALSE FALSE 2629398.18 3005342.79 3381344.688 2001925.498 2083195.834 2254184.431 1772461.667 1566517.353 1787295.535 1464585.542 1.795318952 2.052009052 2.308738268 1.366888748 1.422379079 1.539127873 1.210213822 1.069597718 1.220342195 1 20.48206103 -5.727402317 0.879195043 1.142365184 2.075171007 0.734825127 0.210354085 0.33335692 0.553553929 0.110346271 0.188716326 1.87E-06 5.727402317 0.932805822 VADPDHDHTGFLTEY(ph)VATR ddPTM_HeLa_A486_30min_R1 4 VADPDHDHTGFLTEYVATR 19 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 1 0 VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR ;;; 270.96 9.71E-70 2842920000 2771480 2819260 2063050 776606 2745650 2232410 2678590 2901560 2378470 2741590 TRUE FALSE FALSE 2577213.564 2595851.57 2861918.21 1807978.015 2401264.975 1956997.952 2008378.451 2240938.129 2584637.695 2055078.019 1.254070911 1.263140156 1.392608058 0.879761254 1.16845441 0.952274285 0.977276012 1.090439442 1.25768349 1 20.97076173 -5.250642422 24.99766882 1.048587949 1.299259757 0.541485791 0.108224775 573.0959456 1326858.729 0.029322874 0.050148486 5.62E-06 5.250642422 0.250671808 VAEAVAHFEAQRDS(ph)PPTK ddPTM_HeLa_A485_30min_R1 1 VAEAVAHFEAQRDSPPTK 18 1 Q6PJ61 Q6PJ61 FBXO46 F-box only protein 46 1 0 VAEAVAHFEAQRDS(1)PPTK 160.57 3.51E-12 347590000 119130 131610 106290 156380 169560 145140 190240 203170 125570 225100 TRUE FALSE FALSE 145630.0575 147000.6446 145611.0941 164922.6434 152678.011 152739.306 149593.6699 153342.2389 150770.7472 168986.7127 0.861784073 0.869894694 0.861671855 0.975950362 0.903491219 0.90385394 0.885239245 0.907421871 0.892204747 1 17.36655029 -14 0.239437233 1.577962218 0.886675311 0.506569193 0.031088062 154.6975955 1.54478521 43.60082149 0.052765949 1.00E-14 14 -0.691286907 VAEKLEALS(ph)VK ddPTM_HeLa_A486_30min_R1 1 VAEKLEALSVK 11 1 P43487-2;P43487;C9JXG8;F6WQW2 P43487-2 RANBP1 Ran-specific GTPase-activating protein 1 0 VAEKLEALS(1)VK 82.102 0.0012487 0 149190 131860 61398 101990 120430 156030 210840 173410 84904 269330 TRUE FALSE FALSE 138732.5514 121410.9334 85172.9499 237437.8743 105324.5464 136780.605 158085.602 133928.3285 92263.54708 201888.015 0.687175766 0.601377617 0.42188215 1.176087022 0.521697865 0.677507305 0.783036091 0.663379292 0.457003587 1 17.62319574 -11.23263183 2.333598811 2.148701289 0.670953163 0.199522657 0.200752336 18449283.04 3558245.738 111717298.3 0.048568925 5.85E-12 11.23263183 -1.477748126 VAELALSLSST(ph)SDDEPPSSVSHGAK ddPTM_HeLa_A485_30min_R1 4 VAELALSLSSTSDDEPPSSVSHGAK 25 0 Q5T7F5;Q8N1G2 Q5T7F5 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 0 VAELALSLS(0.001)S(0.067)T(0.662)S(0.27)DDEPPSSVSHGAK;VAELALSLS(0.002)S(0.083)T(0.52)S(0.395)DDEPPSSVSHGAK;VAELALSLS(0.011)S(0.074)T(0.516)S(0.398)DDEPPSSVSHGAK;VAELALSLSS(0.013)T(0.708)S(0.279)DDEPPSSVSHGAK ;;; 282.28 2.31E-75 1869800000 942970 1294140 1156600 691240 1779360 1115300 1588010 1637810 1261270 1474730 TRUE FALSE FALSE 1152730.423 1445478.415 1584474.47 729000.6909 1602200.671 1173695.383 1248718.691 1236134.53 1514395.32 1107106.951 1.041209634 1.305635751 1.431184646 0.658473592 1.447195927 1.060146341 1.127911526 1.116544818 1.367885296 1 20.07836317 -11.43644413 1.757166923 0.00013066 1.171048674 0.051253183 0.223049092 6091585.509 526208.0056 24116097.48 0.053682893 3.66E-12 11.43644413 1.170918015 VAELALSLSST(ph)SDDEPPSSVSHGAK ddPTM_HeLa_A486_30min_R1 4 VAELALSLSSTSDDEPPSSVSHGAK 25 0 Q5T7F5;Q8N1G2 Q5T7F5 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 0 VAELALSLSS(0.063)T(0.543)S(0.393)DDEPPSSVSHGAK;VAELALSLS(0.011)S(0.086)T(0.661)S(0.242)DDEPPSSVSHGAK;VAELALSLSS(0.017)T(0.563)S(0.42)DDEPPSSVSHGAK;VAELALSLS(0.008)S(0.092)T(0.528)S(0.372)DDEPPSSVSHGAK ;;; 337.48 4.55E-123 2453420000 1834840 1800960 1372490 57355.8 2008980 1514180 1887170 1818270 1693360 985920 TRUE FALSE FALSE 1706227.191 1658245.371 1903954.885 133527.201 1756994.995 1327375.867 1414980.106 1404289.614 1840141.808 739039.2147 2.308709954 2.24378536 2.576256911 0.180676747 2.377404284 1.796083131 1.914621142 1.90015575 2.489910916 1 19.49529139 VAEPGAEATSSTGEES(ph)GSEHPPAVPMHNK ddPTM_HeLa_A485_30min_R1 2 VAEPGAEATSSTGEESGSEHPPAVPMHNK 29 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VAEPGAEATSSTGEES(0.5)GS(0.5)EHPPAVPMHNK;VAEPGAEATSSTGEES(0.988)GS(0.012)EHPPAVPMHNK ; 291.31 3.18E-92 1966700000 465090 457900 448610 351240 699020 484440 545540 565310 535300 621850 TRUE FALSE FALSE 568547.666 511447.4218 614569.5072 370427.3518 629423.1144 509804.5293 428980.9223 426666.8361 642729.7999 466834.2393 1.217879106 1.095565361 1.316461938 0.793487968 1.348279671 1.092046141 0.918914866 0.91395789 1.376783761 1 18.83255085 -6.521752573 24.99061506 1.039563459 1.148043159 0.060787584 0.186390866 127.0840672 2820221.286 0.068334772 0.053639107 3.01E-07 6.521752573 0.1084797 VAEPGAEATSSTGEES(ph)GSEHPPAVPMHNK ddPTM_HeLa_A486_30min_R1 1 VAEPGAEATSSTGEESGSEHPPAVPMHNK 29 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VAEPGAEATSS(0.001)T(0.002)GEES(0.989)GS(0.007)EHPPAVPMHNK 220.26 1.32E-38 936360000 200970 272630 190540 19872 277750 214350 245700 208080 238040 117200 TRUE FALSE FALSE 186883.0408 251025.8059 264322.1908 46263.02028 242912.0051 187905.6764 184223.2613 160704.7264 258673.4989 87852.35716 2.127239915 2.857359939 3.00870915 0.526599647 2.765002704 2.138880304 2.096964353 1.829259129 2.944411593 1 16.42279338 -10.7819431 2.702959333 0.68151412 2.238413396 0.224338256 0.699440346 86302068.02 67058815.28 181910369.9 0.17120567 1.65E-11 10.7819431 1.556899276 VAEPGAEATSSTGEES(ph)GSEHPPAVPMHNKR ddPTM_HeLa_A485_30min_R1 5 VAEPGAEATSSTGEESGSEHPPAVPMHNKR 30 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VAEPGAEATSST(0.001)GEES(0.854)GS(0.144)EHPPAVPMHNKR;VAEPGAEATSSTGEES(0.996)GS(0.004)EHPPAVPMHNKR;VAEPGAEATS(0.008)S(0.025)T(0.021)GEES(0.817)GS(0.129)EHPPAVPMHNKR;VAEPGAEATSSTGEES(0.876)GS(0.124)EHPPAVPMHNKR;VAEPGAEATS(0.001)S(0.02)T(0.007)GEES(0.485)GS(0.485)EHPPAVPMHNKR ;;;; 240.94 2.60E-50 5168860000 781855 1109410 934895 507596 1394990 1072750 1279390 1657200 988321 906319 TRUE FALSE FALSE 955775.9474 1239145.849 1280751.565 535324.6842 1256099.897 1128917.531 1006037.875 1250769.102 1186667.959 680390.3529 1.404746471 1.821227834 1.882377608 0.786790527 1.846145955 1.659220367 1.478618664 1.838311047 1.744098743 1 19.37600316 VAEPGAEATSSTGEES(ph)GSEHPPAVPMHNKR ddPTM_HeLa_A486_30min_R1 5 VAEPGAEATSSTGEESGSEHPPAVPMHNKR 30 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VAEPGAEATSSTGEES(0.995)GS(0.005)EHPPAVPMHNKR;VAEPGAEATSSTGEES(0.81)GS(0.19)EHPPAVPMHNKR;VAEPGAEATSS(0.001)T(0.011)GEES(0.902)GS(0.086)EHPPAVPMHNKR;VAEPGAEATSSTGEES(0.974)GS(0.026)EHPPAVPMHNKR;VAEPGAEAT(0.017)S(0.021)S(0.021)T(0.021)GEES(0.704)GS(0.215)EHPPAVPMHNKR ;;;; 269.35 2.51E-64 3330150000 698178 781059 650655 77115.4 976976 600162 755798 726316 631502 465324 TRUE FALSE FALSE 649239.3276 719165.0403 902606.0411 179528.5484 854434.5601 526120.1144 566689.3464 560949.7022 686241.1018 348803.8416 1.861330783 2.061803668 2.587718177 0.514697738 2.449613388 1.508355275 1.624664865 1.608209644 1.967412683 1 18.4120564 -11.19308 0.143456366 9.85E-16 2.126670675 0.165782747 0.541950866 96.66576132 1.871645418 38.09107114 3.676902576 6.41E-12 11.19308 2.126670675 VAESAQS(ph)PAAAHTTDTAGYNAMEESVSR ddPTM_HeLa_A486_30min_R1 2 VAESAQSPAAAHTTDTAGYNAMEESVSR 28 0 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;K7EPC7 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 VAES(0.022)AQS(0.978)PAAAHTTDTAGYNAMEESVSR;VAES(0.027)AQS(0.973)PAAAHTTDTAGYNAMEESVSR ; 163.48 6.13E-14 314210000 98809 127927 139293 31726.8 218473 125963 144643 172249 145379 100886 TRUE FALSE FALSE 91882.99935 117789.5986 193230.98 73861.59378 191070.0792 110422.9658 108451.7915 133031.6629 157980.5688 75623.48894 1.215006087 1.557579533 2.555171451 0.976701747 2.526596985 1.460167566 1.434101931 1.759131518 2.089040997 1 16.20654679 VAFISLS(ph)PVR ddPTM_HeLa_A485_30min_R1 2 VAFISLSPVR 10 0 Q6ZU65-2;Q6ZU65 Q6ZU65-2 UBN2 Ubinuclein-2 1 0 VAFISLS(1)PVR;VAFISLS(1)PVR ; 179.94 1.64E-09 273550000 156423 146410 196614 211290 236940 150292 181925 174588 174772 278980 TRUE FALSE FALSE 191218.7567 163531.3759 269349.7004 222832.2377 213349.4217 158161.0567 143055.2376 131770.0193 209847.1373 209435.4202 0.91302014 0.780820053 1.286075202 1.063966341 1.018688345 0.755178167 0.683051785 0.629167784 1.001965842 1 17.67614593 -6.257298673 23.58871731 0.782519388 1.017698457 0.2568184 0.164575008 205.2897078 1169491.939 0.056756002 0.054746464 5.53E-07 6.257298673 0.23517907 VAFISLS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 VAFISLSPVR 10 0 Q6ZU65-2;Q6ZU65 Q6ZU65-2 UBN2 Ubinuclein-2 1 0 VAFISLS(1)PVR;VAFISLS(1)PVR;VAFIS(0.031)LS(0.969)PVR ;; 233.45 2.21E-18 473791000 215227 315497 268981 114083.7 336784 261875 291232 299489 284396 246307 TRUE FALSE FALSE 200140.6987 290495.8687 373137.6468 265592.6191 294541.4103 229567.525 218362.6733 231301.8925 309047.6743 184630.124 1.084008906 1.573393672 2.0210009 1.438511838 1.595305273 1.24339149 1.182703388 1.252785231 1.673874596 1 17.49427843 -6.260546716 24.43914553 1.280859539 1.564976018 0.20578322 0.264847418 98.71889433 2702731.738 0.091544945 0.086546739 5.49E-07 6.260546716 0.284116479 VAFSVAR ddPTM_HeLa_A485_30min_R1 2 VAFSVAR 7 0 H7C422;P39023;B5MCW2;G5E9G0 H7C422 RPL3 60S ribosomal protein L3 0 0 ; ; 137.59 0.0040746 184474000 184584 254350 239970 195057 296140 242780 283030 304720 226120 273430 FALSE FALSE TRUE 225644.074 284094.0199 328744.889 205712.47 266655.2618 255491.5854 222558.3284 229986.9422 271500.2099 205268.9331 1.099260714 1.38400885 1.601532604 1.00216076 1.299053187 1.244667576 1.084228017 1.120417682 1.322656117 1 17.64715577 -5.275154325 24.99657657 1.165329863 1.36384156 0.274244909 0.154398029 1052.628375 1918496.431 0.043228174 0.064501697 5.31E-06 5.275154325 0.198511698 VAFSVAR ddPTM_HeLa_A486_30min_R1 2 VAFSVAR 7 0 H7C422;P39023;B5MCW2;G5E9G0 H7C422 RPL3 60S ribosomal protein L3 0 0 ; ; 116.11 0.014132 160673000 120504 138094 119990 40416 164566 127515 136931 149149 115308 135700 FALSE FALSE TRUE 112057.2919 127150.9285 166453.3414 94090.49051 143924.5978 111783.4958 102669.4155 115191.0286 125302.9903 101719.8367 1.101626737 1.250011134 1.636390175 0.924996476 1.414911805 1.098935069 1.009335237 1.132434265 1.231844194 1 16.63424153 -6.354971923 13.18403675 1.097334194 1.266387389 0.177236669 0.184246484 2.125604945 294.8087359 0.06375587 0.056221121 4.42E-07 6.354971923 0.169053195 VAGAAT(ph)PK ddPTM_HeLa_A485_30min_R1 3 VAGAATPK 8 0 P16402 P16402 HIST1H1D Histone H1.3 1 0 VAGAAT(1)PK;VAGAAT(1)PK;VAGAAT(1)PK ;; 104.22 0.0073238 628860000 1671040 1244880 1231930 4113500 2462500 1441530 2267130 3115020 1774000 8544200 TRUE FALSE FALSE 2042757.083 1390457.887 1687672.172 4338210.089 2217324.854 1517006.282 1782739.155 2351056.461 2130025.528 6414288.184 0.318469801 0.216775088 0.263111373 0.676335388 0.345685256 0.236504229 0.277932501 0.366534274 0.332075121 1 22.61285774 -10.86232289 1.559311344 1.403958851 0.337735907 0.725088496 0.122462323 36699.22646 12053.37525 54771.59699 0.035929197 1.37E-11 10.86232289 -1.066222944 VAGAAT(ph)PK ddPTM_HeLa_A486_30min_R1 3 VAGAATPK 8 0 P16402 P16402 HIST1H1D Histone H1.3 1 0 VAGAAT(1)PK;VAGAAT(1)PK;VAGAAT(1)PK ;; 104.22 0.0073238 663590000 1956060 2870110 1401770 1472800 2237290 3207150 3972700 3328480 1883420 3598280 TRUE FALSE FALSE 1818950.295 2642672.031 1944572.885 3428752.831 1956668.226 2811484.441 2978688.441 2570657.764 2046676.362 2697247.267 0.674372838 0.979766321 0.720947207 1.271204488 0.725431535 1.042353245 1.104343854 0.953067149 0.758801904 1 21.36305635 -3.660079401 1.20226342 0.963245019 1.85E-11 0.188796967 0.167792245 9.507340667 4.210930319 0.047702143 16.25647947 0.000218736 3.660079401 -0.963245019 VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(ph)PEQEGQLMPR ddPTM_HeLa_A486_30min_R1 2 VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLSPEQEGQLMPR 43 1 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 0 VAGDLGAGSSPHPSLTEEEDS(0.001)QTELLIAEEKLS(0.999)PEQEGQLMPR;VAGDLGAGSSPHPSLTEEEDSQTELLIAEEKLS(1)PEQEGQLMPR ; 323.25 9.88E-113 191355000 34280 33593 21107.6 3636.8 34944 26125 37057 34124 30082 17211.3 TRUE FALSE FALSE 31877.14902 30930.96834 29281.028 8466.654194 30560.99768 22901.96312 27784.94665 26354.71012 32689.53198 12901.47845 2.470813646 2.397474712 2.269587017 0.65625457 2.368798103 1.775142531 2.153625009 2.042766666 2.533781853 1 13.65524878 -5.019540517 24.97844772 1.840664643 2.408991209 0.194444859 0.549173733 1268.015213 1620894.555 0.146014022 0.257812004 9.56E-06 5.019540517 0.568326566 VAGGAAPSKPAS(ph)AK ddPTM_HeLa_A485_30min_R1 4 VAGGAAPSKPASAK 14 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK ;;; 152.32 2.18E-08 3848030000 5499600 3248390 2073080 9535900 5622800 4845190 8535800 8061700 3696030 12370700 TRUE FALSE FALSE 6722967.047 3628260.953 2839998.56 10056822.07 5062974.289 5098876.656 6712056.599 6084555.435 4437789.319 9286912.156 0.723918449 0.390685396 0.305806549 1.082902681 0.545173057 0.549038967 0.72274363 0.655175298 0.477854129 1 23.14676756 -10.74641214 2.57036171 1.087767901 0.606218234 0.250928838 0.204262401 36655798.92 27529970.89 20455453.62 0.054944355 1.79E-11 10.74641214 -0.481549667 VAGGAAPSKPAS(ph)AK ddPTM_HeLa_A486_30min_R1 5 VAGGAAPSKPASAK 14 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK;VAGGAAPSKPAS(1)AK ;;;; 180.64 1.24E-17 5408840000 5318890 4685300 1659369 3803930 3880640 6685300 8741840 7445820 3507170 10936380 TRUE FALSE FALSE 4946063.278 4314019.764 2301921.116 8855741.28 3393893.946 5860535.657 6554539.17 5750569.327 3811174.319 8197839.264 0.603337431 0.526238637 0.280796078 1.0802531 0.413998596 0.714887846 0.799544729 0.701473784 0.464899859 1 22.96681227 -14 0.148607921 2.241976834 0.514365302 0.213996899 0.213491069 215.4807635 1.908047604 80.1446923 1.094682884 1.00E-14 14 -1.727611532 VAGGAAPSKPAS(ph)AKK ddPTM_HeLa_A485_30min_R1 2 VAGGAAPSKPASAKK 15 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VAGGAAPS(0.039)KPAS(0.961)AKK;VAGGAAPS(0.001)KPAS(0.999)AKK ; 119.31 3.97E-05 1625170000 1839070 1026100 651410 3400200 1996460 1836850 3399000 3243000 1293070 4881000 TRUE FALSE FALSE 2248164.777 1146093.469 892393.6664 3585944.316 1797685.432 1933024.626 2672775.883 2447649.165 1552577.288 3664256.528 0.613539134 0.312776537 0.243540172 0.978628076 0.490600322 0.527535289 0.729418331 0.667979752 0.423708678 1 21.80508908 -14 0.139006786 2.451342634 0.4015935 0.302277541 0.20164387 179.255018 1.529273339 72.83248056 1.294388231 1.00E-14 14 -2.049749134 VAGGAAPSKPAS(ph)AKK ddPTM_HeLa_A486_30min_R1 2 VAGGAAPSKPASAKK 15 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VAGGAAPS(0.201)KPAS(0.799)AKK;VAGGAAPS(0.001)KPAS(0.999)AKK ; 107.57 0.00019648 2352670000 2579980 2647230 1962120 1219650 2712180 2509040 3145970 3221790 1970250 3153230 TRUE FALSE FALSE 2399136.725 2437453.854 2721905.411 2839406.838 2371993.094 2199500.155 2358815.031 2488258.748 2141032.856 2363640.684 1.015017528 1.031228592 1.151573262 1.201285313 1.003533706 0.930556057 0.997958381 1.052722931 0.905819937 1 21.17257931 -5.974923044 24.50689158 0.980330157 1.099058516 0.466397415 0.06232135 176.1322386 172127.155 0.020533704 0.023282138 1.06E-06 5.974923044 0.118728359 VAGGAAPSKPASAK(ac)K ddPTM_HeLa_A485_30min_R1 1 VAGGAAPSKPASAKK 15 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 VAGGAAPSKPASAK(1)K 130.29 0.00015662 99597000 58352 54412 43253 66982 79958 77852 100980 116550 74506 105590 FALSE TRUE FALSE 71332.20109 60775.01008 59254.08461 70641.05705 71997.10077 81928.21034 79404.79807 87965.92976 89458.67079 79268.35624 0.899882431 0.766699512 0.747512468 0.89116339 0.908270389 1.033555056 1.001721265 1.109723147 1.128554634 1 16.27445744 -6.096168068 1.177580264 1.076960911 0.802515109 0.796069453 0.055647546 0.196155202 0.567466159 0.026727284 0.028039958 8.01E-07 6.096168068 -0.274445802 VAGGAAPSKPASAK(ac)K ddPTM_HeLa_A486_30min_R1 2 VAGGAAPSKPASAKK 15 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; VAGGAAPSKPASAK(1)K;VAGGAAPSKPASAK(1)K 190.11 6.57E-11 191212000 273570 278870 153005 114856 331330 313250 345440 353840 233950 379080 FALSE TRUE FALSE 254394.1557 256771.3256 212252.6336 267390.5725 289771.5019 274604.3999 259007.2583 273278.3563 254228.9744 284155.9006 0.895262619 0.903628343 0.746958389 0.940999543 1.019762395 0.966386407 0.911497026 0.961719801 0.894681313 1 18.11632315 -5.493393962 24.85314962 0.957386642 0.852427836 0.473168347 0.052368249 585.0104721 493113.5269 0.014840593 0.021970019 3.21E-06 5.493393962 -0.104958807 VAGGLLGSGTRAS(ph)PDS(ph)SSCGERSPPPPPPPPSDEALLHCVLEGK ddPTM_HeLa_A485_30min_R1 1 VAGGLLGSGTRASPDSSSCGERSPPPPPPPPSDEALLHCVLEGK 44 2 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 2 0 VAGGLLGS(0.301)GT(0.339)RAS(0.36)PDS(0.287)S(0.27)S(0.254)CGERS(0.189)PPPPPPPPSDEALLHCVLEGK 89.844 2.44E-05 49100000 9207.3 12157 12544 10262 24899 19365 30353 34921 14970 18953 TRUE FALSE FALSE 11255.43212 13578.6554 17184.5476 10822.58708 22419.96813 20378.92146 23867.83359 26356.57 17974.34169 14228.3659 0.791055853 0.954336955 1.207766775 0.760634577 1.575723332 1.432274204 1.677482414 1.852396134 1.263275193 1 13.79648236 -5.769674875 24.99876502 1.51828041 0.950249003 0.526813258 0.246768325 132.9647602 403612.339 0.07391833 0.085218851 1.70E-06 5.769674875 -0.568031407 VAGPADAPMDS(ph)GAEEEKAGAATVK ddPTM_HeLa_A485_30min_R1 2 VAGPADAPMDSGAEEEKAGAATVK 24 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 VAGPADAPMDS(1)GAEEEKAGAATVK;VAGPADAPMDS(1)GAEEEKAGAATVK ; 158.61 7.59E-19 0 568460 428840 277450 892310 771450 651110 1066500 1126020 444730 1214040 TRUE FALSE FALSE 694911.9658 478989.1076 380090.3007 941054.6359 694641.7293 685201.1128 838633.5625 849861.8295 533983.2317 911402.1708 0.762464681 0.525551862 0.417039056 1.032534995 0.762168175 0.751809832 0.920157521 0.932477293 0.58589199 1 19.79772828 -5.256644419 24.99877822 0.846738844 0.56407187 0.441720336 0.147450865 378.5518015 1973592.62 0.039613011 0.065858818 5.54E-06 5.256644419 -0.282666974 VAHALAEGLGVIACIGEK ddPTM_HeLa_A485_30min_R1 4 VAHALAEGLGVIACIGEK 18 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 ;;; ;;; 240.24 4.24E-37 180213000 166704 171676 142031 193579 200716 193703 261015 291044 164145 281762 FALSE FALSE TRUE 203786.7297 191752.0148 194574.1773 204153.7306 180732.0103 203844.9896 205247.013 219665.0027 197087.3959 211523.9188 0.963421682 0.906526391 0.91986844 0.965156715 0.854428243 0.963697111 0.970325314 1.038487769 0.931749927 1 17.69046129 -6.508396989 19.79204717 0.985300194 0.92189404 0.38419291 0.03811166 44.01530597 60157.1459 0.013191327 0.011162677 3.10E-07 6.508396989 -0.063406154 VAHALAEGLGVIACIGEK ddPTM_HeLa_A486_30min_R1 4 VAHALAEGLGVIACIGEK 18 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 ;;; ;;; 234.77 6.95E-37 202779000 289866 301133 206098 181104 589791 334838 383237 366682 269738 383681 FALSE FALSE TRUE 269547.8903 277270.1244 285904.6651 421619.2645 515813.9132 293529.0919 287347.0491 283196.5132 293119.107 287604.7803 0.937216308 0.964066467 0.99408871 1.465967513 1.79348171 1.020598794 0.999103871 0.984672483 1.019173279 1 18.13372813 -6.481364194 24.99962957 1.00094371 1.235133225 0.179515455 0.242068788 1000.495093 602488.2913 0.096786808 0.085349243 3.30E-07 6.481364194 0.234189515 VAHILNISPPLNLNPVWFK ddPTM_HeLa_A485_30min_R1 1 VAHILNISPPLNLNPVWFK 19 0 Q6YN16 Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 0 0 150.76 2.52E-10 7217800 3986.7 4366 3845.6 4132.6 4801 5340.2 8167.9 8155.9 3510.9 6732.6 FALSE FALSE TRUE 4873.527661 4876.565721 5268.247469 4358.353474 4322.995583 5619.804614 6422.761439 6155.652737 4215.505426 5054.286724 0.964236484 0.96483757 1.04233253 0.862308316 0.855312692 1.111888763 1.27075526 1.217907308 0.834045565 1 12.30329179 -6.281971422 23.30061135 1.112028381 0.940920075 0.257396644 0.122938204 439.5052234 498766.032 0.04442342 0.039237288 5.22E-07 6.281971422 -0.171108306 VAHILNISPPLNLNPVWFK ddPTM_HeLa_A486_30min_R1 1 VAHILNISPPLNLNPVWFK 19 0 Q6YN16 Q6YN16 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 0 0 183.7 2.96E-18 9812300 3156.9 4415.4 3879.5 1556.7 5323.9 4873 5209.6 5475.1 4587.1 4663.5 FALSE FALSE TRUE 2935.617612 4065.507623 5381.746297 3624.076271 4656.126819 4271.818805 3906.102978 4228.539251 4984.713521 3495.729246 0.839772593 1.162992708 1.539520346 1.036715379 1.331947211 1.222010775 1.117392883 1.209630081 1.425943822 1 11.77137773 -4.297849164 4.274341032 1.240564634 0.821129201 0.356186205 0.157975127 0.192515152 7.511631409 0.037525348 0.223679935 5.04E-05 4.297849164 -0.419435433 VAHSFNCTPIEGMLSHQLK ddPTM_HeLa_A485_30min_R1 1 VAHSFNCTPIEGMLSHQLK 19 0 Q9UQ80;Q9UQ80-2;F8VR77;F8W0A3 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 112.55 2.25E-05 3833100 10045 15382 14391 8885 28085 9712.7 18582 16567 12206 22723 FALSE FALSE TRUE 12279.4756 17180.79109 19714.82976 9370.365052 25288.75879 10221.24195 14611.8039 12503.91727 14655.63224 17058.57429 0.719841845 1.007164538 1.155713803 0.549305287 1.482466141 0.599185007 0.856566537 0.732998964 0.859135822 1 14.05820945 VAIDVGYR ddPTM_HeLa_A485_30min_R1 2 VAIDVGYR 8 0 P15121;E9PCX2;E9PEF9 P15121 AKR1B1 Aldose reductase 0 0 ; ; 135.84 0.0014239 156123000 281570 367560 391300 319850 473320 385870 495190 495870 359910 455270 FALSE FALSE TRUE 344204.2751 410542.9447 536058.1534 337322.5956 426194.5989 406073.5565 389388.6112 374257.105 432140.6357 341779.5676 1.007094361 1.201192182 1.568432417 0.986959513 1.246986769 1.188115367 1.139297512 1.095024807 1.264384055 1 18.38270663 -13.99993533 0.216469767 0.03917543 1.217160283 0.111337829 0.155011459 334.155159 3.340979028 139.5286877 0.308425634 1.00E-14 13.99993533 1.177984853 VAIDVGYR ddPTM_HeLa_A486_30min_R1 1 VAIDVGYR 8 0 P15121;E9PCX2;E9PEF9 P15121 AKR1B1 Aldose reductase 0 0 92.47 0.025724 0 97478 129330 110660 50156 181000 133930 159470 162310 115370 131620 FALSE FALSE TRUE 90645.29558 119081.4198 153510.5156 116765.7027 158297.2922 117407.0783 119568.9193 125355.5562 125370.3645 98661.4953 0.918750474 1.206969542 1.55593137 1.183498207 1.604448542 1.189998975 1.211910674 1.270562095 1.270712187 1 16.59019953 -9.339586382 0.726585275 0.982512894 1.283529233 0.156923286 0.184296077 20.41236002 8.84261953 1.212145307 0.066156526 4.58E-10 9.339586382 0.301016339 VAIEHLDK ddPTM_HeLa_A486_30min_R1 1 VAIEHLDK 8 0 B7ZAR1;E9PCA1;P48643;E7ENZ3;P48643-2 B7ZAR1 CCT5 T-complex protein 1 subunit epsilon 0 0 95.099 0.010714 79679000 133400 143390 90299 55485 181280 146660 166740 171910 112170 166580 FALSE FALSE TRUE 124049.3489 132027.2542 125265.1911 129171.8841 158542.172 128566.5803 125019.8884 132769.8458 121892.9859 124867.2837 0.993449566 1.057340644 1.003186642 1.034473404 1.269685439 1.029625827 1.001222135 1.063287691 0.976180327 1 16.930036 -9.73580758 8.321976029 1.000000363 1.051299318 0.029786484 0.079017453 0 0 0.078867907 0.019128277 1.84E-10 9.73580758 0.051298955 VAIIRT(ph)PPKSPATPK ddPTM_HeLa_A485_30min_R1 2 VAIIRTPPKSPATPK 15 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 VAIIRT(0.997)PPKS(0.003)PATPK;VAIIRT(0.996)PPKS(0.004)PATPK ; 114.34 0.00016548 2704000000 2960200 2326500 1721490 4609300 3660100 3435300 5149800 5238900 2882200 6135700 TRUE FALSE FALSE 3618686.277 2598563.937 2358340.788 4861094.388 3295687.593 3615166.996 4049503.16 3954051.561 3460631.103 4606182.909 0.785614976 0.564146928 0.511994603 1.055341154 0.715492124 0.784850942 0.879145106 0.858422611 0.751301277 1 22.13514027 -2.3138992 0.107933718 1.0819779 1.08E-15 0.272100859 0.138235092 111.5662826 1.13947633 1.59002478 17.68659424 0.004854011 2.3138992 -1.0819779 VAIIRT(ph)PPKSPATPK ddPTM_HeLa_A486_30min_R1 1 VAIIRTPPKSPATPK 15 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 VAIIRT(0.994)PPKS(0.006)PATPK 137.44 6.64E-06 1441000000 706380 702140 357160 361070 706850 858900 1064000 1030200 589580 1022500 TRUE FALSE FALSE 656866.4098 646499.8693 495461.9171 840589.2075 618190.2819 752937.6507 797775.9462 795645.9491 640685.2691 766459.3446 0.857014027 0.843488795 0.646429482 1.09671728 0.806553258 0.982358237 1.04085879 1.038079782 0.835902483 1 19.54784974 -5.264291288 24.99990907 0.969552479 0.788428574 0.430185222 0.099685976 243.924019 2138250.358 0.027408818 0.042757696 5.44E-06 5.264291288 -0.181123904 VAKPDLVHQEAVDKEES(ph)YESSGEHESLTMESLK ddPTM_HeLa_A486_30min_R1 1 VAKPDLVHQEAVDKEESYESSGEHESLTMESLK 33 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 VAKPDLVHQEAVDKEES(0.447)YES(0.447)S(0.106)GEHESLTMESLK 171.41 5.41E-15 243330000 175280 152640 92483 56677 138640 149370 191640 147130 122150 104330 TRUE FALSE FALSE 162993.7771 140544.2505 128294.8944 131946.9203 121250.4784 130942.2481 143689.645 113631.7108 132738.0604 78205.08893 2.084183771 1.797124106 1.640492916 1.687190976 1.550416732 1.674344341 1.837343925 1.452996376 1.697307198 1 16.25497487 -11.46678038 0.17555407 3.56E-19 1.906687514 0.710383049 0.144420962 27.14317251 0.588855472 11.47926538 0.56239974 3.41E-12 11.46678038 1.906687514 VALENDDRS(ph)EEEKYTAVQR ddPTM_HeLa_A485_30min_R1 1 VALENDDRSEEEKYTAVQR 19 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZH85;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 VALENDDRS(0.951)EEEKYT(0.048)AVQR 50.827 0.017391 110640000 53808 42879 37404 72436 49282 59294 76611 97810 47432 84058 TRUE FALSE FALSE 65777.40396 47893.32605 51241.29611 76392.99526 44375.31104 62398.54215 60242.434 73821.94414 56951.16733 63103.88757 1.042366905 0.758959993 0.812014887 1.210590951 0.703210416 0.988822473 0.954654876 1.169847801 0.902498555 1 15.94544127 -6.736470817 2.763356564 1.027149648 0.906498015 0.084503808 0.15047101 0.614654326 9.60002173 0.065856754 0.045301506 1.83E-07 6.736470817 -0.120651633 VALENDDRS(ph)EEEKYTAVQR ddPTM_HeLa_A486_30min_R1 1 VALENDDRSEEEKYTAVQR 19 2 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHX3;F8W0B5;A0A5F9ZH85;A0A5F9ZHH4;F8WB06 Q99700;A0A5F9ZHH4;F8WB06 ATXN2 Ataxin-2 1 0 VALENDDRS(1)EEEKYTAVQR 184.76 1.64E-18 171280000 165180 152230 101820 78487 173800 150380 222000 191800 123000 218070 TRUE FALSE FALSE 153601.735 140166.7404 141247.4308 182721.7025 152000.3834 131827.6446 166453.2519 148131.327 133661.739 163463.8526 0.939667899 0.857478508 0.864089697 1.117811061 0.929871534 0.806463585 1.018287831 0.906202348 0.817683769 1 17.31861212 -5.265745784 0.003287757 1.841368663 1.34E-07 0.010748403 0.092197364 464739.6007 344.3449848 94854.41011 98011.4644 5.42E-06 5.265745784 -1.841368529 VALS(ph)DDETK ddPTM_HeLa_A485_30min_R1 4 VALSDDETK 9 0 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(1)DDETK;VALS(1)DDETK;VALS(1)DDETK;VALS(1)DDETK ;;; 174.57 2.99E-06 991190000 1754590 1740670 999380 2469350 1238070 1496820 2008460 1741940 1158470 2809460 TRUE FALSE FALSE 2144892.492 1944226.215 1369092.25 2604244.338 1114803.404 1575191.181 1579336.113 1314726.484 1390964.303 2109113.326 1.016964079 0.921821597 0.649131667 1.234757898 0.528564961 0.746849949 0.748815198 0.623355069 0.659501927 1 21.00820519 -5.783762328 24.9999829 0.702014139 0.931355931 0.298305414 0.176124563 297.1707831 332806.7448 0.052175423 0.05920524 1.65E-06 5.783762328 0.229341792 VALS(ph)DDETK ddPTM_HeLa_A486_30min_R1 3 VALSDDETK 9 0 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(1)DDETK;VALS(1)DDETK;VALS(1)DDETK ;; 176.42 1.58E-06 1683960000 2711030 2578510 1099800 932220 1641730 2398420 2562240 2242250 1815810 3972220 TRUE FALSE FALSE 2521000.797 2374179.477 1525672.014 2170255.272 1435808.915 2102527.326 1921140.451 1731738.623 1973205.873 2977550.257 0.846669436 0.797360001 0.512391692 0.728872759 0.48221148 0.706126562 0.645208405 0.581598453 0.662694397 1 21.50569443 -10.0057771 8.697018906 1.000000001 0.657152027 0.458812936 0.109799341 1.67E-09 1.83E-10 0.106633596 0.025862446 9.87E-11 10.0057771 -0.342847974 VALS(ph)DDETKETENMR ddPTM_HeLa_A485_30min_R1 7 VALSDDETKETENMR 15 1 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(1)DDETKETENMR;VALS(0.972)DDET(0.028)KETENMR;VALS(0.491)DDET(0.491)KET(0.019)ENMR;VALS(0.955)DDET(0.028)KET(0.017)ENMR;VALS(0.999)DDET(0.001)KETENMR;VALS(0.997)DDET(0.003)KETENMR;VALS(1)DDETKETENMR ;;;;;; 239.87 4.94E-40 5108785000 2279462 1989507 1743947 3863106 2781482 2306985 3759710 3409445 2078928 5001050 TRUE FALSE FALSE 2786520.458 2222162.537 2389105.567 4074137.699 2504547.886 2427775.167 2956417.244 2573273.268 2496149.781 3754380.273 0.742205173 0.591885312 0.636351513 1.085169163 0.667100215 0.646651375 0.787458124 0.685405601 0.664863333 1 21.84014335 -10.99206701 2.913670938 1.261490375 0.72415561 0.283893402 0.131965198 99418965.93 97125567.77 174889738 0.033693814 1.02E-11 10.99206701 -0.537334765 VALS(ph)DDETKETENMR ddPTM_HeLa_A486_30min_R1 9 VALSDDETKETENMR 15 1 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(1)DDETKETENMR;VALS(0.999)DDET(0.001)KETENMR;VALS(0.998)DDET(0.001)KET(0.001)ENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR ;;;;;;;; 267.33 3.55E-51 13544380000 9335190 9147840 4532350 5595540 8663810 11209580 14074090 12889980 7546270 16379520 TRUE FALSE FALSE 8680841.388 8422931.843 6287397.301 13026699.9 7577114.163 9826655.99 10552603.82 9955212.94 8200386.76 12277981.58 0.707025119 0.68601926 0.512087207 1.060980571 0.617130276 0.800347836 0.859473827 0.810818364 0.667893717 1 23.54957007 -14 0.085361653 1.734603629 0.544006416 0.230313633 0.141312825 351.7650989 2.101263293 48.88779002 3.905465256 1.00E-14 14 -1.190597213 VALS(ph)DDETKETENMRK ddPTM_HeLa_A485_30min_R1 1 VALSDDETKETENMRK 16 2 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(0.999)DDET(0.001)KETENMRK 69.361 0.004098 523190000 129820 130460 109270 180940 208910 194680 314490 329670 167050 259250 TRUE FALSE FALSE 158698.0111 145716.1621 149693.5201 190824.294 188110.1869 204873.1438 247296.6424 248817.9156 200575.4027 194623.7461 0.815409292 0.748707005 0.769143145 0.980477962 0.966532556 1.052662626 1.270639617 1.278456101 1.030580321 1 17.57032822 -5.781483925 1.123668207 1.160168707 0.767342294 0.704035504 0.095126266 0.255926553 0.686613935 0.042001868 0.061283151 1.65E-06 5.781483925 -0.392826413 VALS(ph)DDETKETENMRK ddPTM_HeLa_A486_30min_R1 1 VALSDDETKETENMRK 16 2 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(1)DDETKETENMRK 96.379 0.00031776 535750000 465760 294830 194430 267160 407670 417220 587130 525080 275500 665100 TRUE FALSE FALSE 433112.6292 271466.597 269718.503 621961.9815 356536.2272 365747.6384 440223.864 405530.7464 299380.5618 498554.6309 0.868736548 0.544507222 0.541000898 1.247530246 0.715139736 0.733615968 0.88300025 0.813412856 0.600497003 1 18.92739208 -11.34272459 2.228448282 2.311337413 0.774133221 0.107371926 0.197180037 10004912.02 1223259.099 66166370.79 0.052606037 4.54E-12 11.34272459 -1.537204191 VALVTFNSAAHNKPSLIR ddPTM_HeLa_A485_30min_R1 2 VALVTFNSAAHNKPSLIR 18 1 Q86VP6-2;Q86VP6;A0A0C4DGH5 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 ; ; 130.27 7.60E-07 29402000 33047 37369 38191 27574 55741 34297 52116 49195 36471 55875 FALSE FALSE TRUE 40398.19114 41738.97948 52319.44016 29080.2978 50191.23032 36092.73789 40980.99085 37129.84912 43790.39517 41946.3908 0.963090992 0.995055324 1.247293013 0.693272943 1.19655659 0.860449188 0.97698491 0.885173871 1.043960978 1 15.35625906 -5.231246295 24.44613514 0.953681488 1.061137198 0.126100555 0.14130084 1199.66371 971317.2996 0.035985181 0.062317353 5.87E-06 5.231246295 0.10745571 VALVTFNSAAHNKPSLIR ddPTM_HeLa_A486_30min_R1 1 VALVTFNSAAHNKPSLIR 18 1 Q86VP6-2;Q86VP6;A0A0C4DGH5 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 110.77 5.71E-05 14999000 17608 26756 20322 20375 32805 26805 27716 32230 21301 30208 FALSE FALSE TRUE 16373.77013 24635.75712 28191.22264 47434.0297 28690.29101 23498.07163 20781.16365 24891.93258 23147.38783 22643.72018 0.723104243 1.087973042 1.244990771 2.09479844 1.267030805 1.037730172 0.917745118 1.099286353 1.022243149 1 14.46682338 -6.246120845 5.452641475 1.014245717 1.317356588 0.145138084 0.321537002 0.364475162 37.4621697 0.119909946 0.114831015 5.67E-07 6.246120845 0.303110871 VANMAFS(ph)NDLFNK ddPTM_HeLa_A486_30min_R1 1 VANMAFSNDLFNK 13 0 A0A087WYL3;Q17R60 A0A087WYL3 IMPG1 Interphotoreceptor matrix proteoglycan 1 1 0 VANMAFS(1)NDLFNK 66.435 0.010975 0 15125 15763 14438 5826.5 19465 15064 16608 17715 14411 21229 TRUE FALSE FALSE 14064.81561 14513.88247 20028.78026 13564.38646 17023.5182 13205.55684 12452.50274 13681.68122 15660.15708 15913.12022 0.88385027 0.912070183 1.258633127 0.852402688 1.069778771 0.829853395 0.782530551 0.859773635 0.984103486 1 13.95792912 -6.269199846 24.7945233 0.875692962 0.997406174 0.144636218 0.123660631 948.1230875 3029223.092 0.043067181 0.038688552 5.38E-07 6.269199846 0.121713212 VANPSGNLTETYVQDR ddPTM_HeLa_A485_30min_R1 1 VANPSGNLTETYVQDR 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 315.29 1.69E-82 27612000 7147.9 8562.6 11534 8171.6 15471 9630.3 10268 11704 12559 12203 FALSE FALSE TRUE 8737.925695 9563.921585 15800.90657 8617.993816 13930.65292 10134.52762 8074.157918 8833.575649 15079.4761 9161.01668 0.953816154 1.04398037 1.724798363 0.940724607 1.520644859 1.106266692 0.881360465 0.96425713 1.646048319 1 13.161292 -6.462887618 24.99824215 1.101917226 1.244415396 0.034939233 0.299663491 887.7525814 369924.9715 0.104768293 0.092396823 3.44E-07 6.462887618 0.14249817 VANS(ph)PTMVNLLLGK ddPTM_HeLa_A485_30min_R1 2 VANSPTMVNLLLGK 14 0 Q6UB99;A0A087WTN8;A0A2R8Y438 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 VANS(1)PTMVNLLLGK;VANS(1)PTMVNLLLGK ; 223.45 8.27E-28 639600000 442160 481740 361510 451810 567260 498240 612500 666720 461370 660480 TRUE FALSE FALSE 540516.9666 538075.3024 495247.5927 476491.2363 510781.6026 524327.076 481634.3713 503205.8746 553962.7271 495834.4912 1.090115706 1.085191353 0.998816342 0.960988484 1.030145364 1.057463902 0.97136117 1.014866621 1.117233143 1 18.91949911 -4.750438662 24.41610989 1.017408952 1.087653603 0.299129792 0.042074336 197.7193532 438826.5427 0.010935704 0.028296316 1.78E-05 4.750438662 0.070244652 VANS(ph)PTMVNLLLGK ddPTM_HeLa_A486_30min_R1 2 VANSPTMVNLLLGK 14 0 Q6UB99;A0A087WTN8;A0A2R8Y438 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 VANS(0.998)PT(0.002)MVNLLLGK;VANS(1)PTMVNLLLGK ; 162.59 7.46E-12 450750000 339410 344130 210917 139319 332210 317490 385090 364500 287610 354810 TRUE FALSE FALSE 315619.1117 316859.8855 292589.711 324341.6728 290541.1241 278321.3118 288736.4089 281511.307 312540.2664 265963.2666 1.186701892 1.1913671 1.10011324 1.219498004 1.092410722 1.046465233 1.085625142 1.058459353 1.175125687 1 18.02086748 -5.890419427 6.841892261 1.076761655 1.169967478 0.481503096 0.050001057 0.199333302 11.32837282 0.014938472 0.016991931 1.29E-06 5.890419427 0.093205823 VANVSLLALYK ddPTM_HeLa_A485_30min_R1 2 VANVSLLALYK 11 0 P62266 P62266 RPS23 40S ribosomal protein S23 0 0 ; ; 165.11 1.38E-05 79834000 105787 116938 96884 116669 153366 121325 154462 181895 95654 161984 FALSE FALSE TRUE 129318.9532 130612.8819 132725.4233 123042.332 138096.3425 127677.3894 121459.9319 137284.966 114850.8804 121604.3699 1.063440017 1.074080496 1.091452745 1.011824922 1.135619901 1.0499408 0.99881223 1.128947637 0.944463431 1 16.89183555 -7.774292872 24.99997657 0.972231678 1.067469581 0.44549587 0.043265162 229.8279274 447000.4997 0.038537938 0.010210201 1.68E-08 7.774292872 0.095237903 VANVSLLALYK ddPTM_HeLa_A486_30min_R1 2 VANVSLLALYK 11 0 P62266 P62266 RPS23 40S ribosomal protein S23 0 0 ; ; 228.64 8.25E-21 96167000 144318 162916 107260 56143 175065 158715 177808 171426 137928 178961 FALSE FALSE TRUE 134202.0535 150005.9428 148793.9445 130703.7413 153106.7153 139134.357 133318.5577 132396.042 149883.7101 134148.0008 1.000402933 1.118212288 1.109177503 0.974324929 1.141326851 1.037170559 0.993816956 0.986940105 1.11730111 1 17.03346603 -6.508683922 24.69956618 1.022293003 1.070527282 0.113615508 0.058768041 1177.893533 2049591.859 0.02065514 0.017508878 3.10E-07 6.508683922 0.048234279 VAPEEHPVLLTEAPLNPK ddPTM_HeLa_A485_30min_R1 8 VAPEEHPVLLTEAPLNPK 18 0 P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;;; ;;;;;;; 301.94 2.99E-72 8232920000 7177570 7149300 6086750 8600050 10055060 8776050 11830600 12485570 7731170 11415750 FALSE FALSE TRUE 8774195.684 7985348.444 8338492.116 9069848.955 9053942.921 9235550.408 9302895.663 9423464.381 9282744.905 8570013.616 1.023825174 0.931777801 0.972984699 1.058323751 1.05646774 1.077658779 1.085517022 1.099585695 1.083165712 1 23.03086607 -5.302848168 3.855348301 1.072216064 0.970688908 0.604685127 0.033009754 0.133184434 4.247976216 0.009159601 0.014738271 4.98E-06 5.302848168 -0.101527156 VAPEEHPVLLTEAPLNPK ddPTM_HeLa_A486_30min_R1 7 VAPEEHPVLLTEAPLNPK 18 0 P60709;A0A2R8Y793;G5E9R0;E7EVS6;A0A2R8YGF8;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;; ;;;;;; 317.07 6.46E-87 5231980000 4049820 4515850 3323700 2127140 6573750 4852860 5786590 5540040 4110190 5061060 FALSE FALSE TRUE 3765948.531 4157997.6 4610725.652 4952089.42 5749208.977 4254163.473 4338723.978 4278693.83 4466464.579 3793737.634 0.992675007 1.096016119 1.215351745 1.305332603 1.515447174 1.121364703 1.1436542 1.127830716 1.177325638 1 21.85518848 VAPGPSSGSTPGQVPGSS(ph)ALSSPRR ddPTM_HeLa_A486_30min_R1 1 VAPGPSSGSTPGQVPGSSALSSPRR 25 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.102)S(0.464)ALS(0.356)S(0.079)PRR 71.297 0.0057632 262690000 47117 79714 37026 18917 42598 69042 90560 91311 42791 99887 TRUE FALSE FALSE 43814.34161 73397.17233 51363.45879 44039.73201 37254.96163 60524.30001 67900.93015 70521.47861 46500.15833 74874.64504 0.585169273 0.980267383 0.685992685 0.58817951 0.497564451 0.808341729 0.906861463 0.941860607 0.621040117 1 16.19218964 -6.506620184 23.64364072 0.861882211 0.678593264 0.28591296 0.150411855 526.216138 765241.1222 0.055578628 0.047627214 3.11E-07 6.506620184 -0.183288946 VAPGPSSGSTPGQVPGSSALS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 VAPGPSSGSTPGQVPGSSALSSPR 24 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.109)S(0.109)ALS(0.391)S(0.391)PR 69.122 0.00035771 0 17736 23781 22099 14887 24001 19114 24615 23372 21824 23916 TRUE FALSE FALSE 21681.31201 26561.98108 30274.33972 15700.23911 21611.37617 20114.77948 19355.80416 17639.98035 26203.87662 17954.18134 1.207591235 1.47943148 1.686199952 0.874461431 1.203695995 1.120339552 1.078066652 0.982499843 1.459486017 1 14.13203225 -5.260939643 24.99997349 1.105843774 1.459909942 0.444482557 0.181886528 40.73392338 2037720.614 0.049035073 0.078701924 5.48E-06 5.260939643 0.354066168 VAPGPSSGSTPGQVPGSSALS(ph)SPRR ddPTM_HeLa_A485_30min_R1 2 VAPGPSSGSTPGQVPGSSALSSPRR 25 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.032)S(0.032)ALS(0.536)S(0.4)PRR;VAPGPSSGSTPGQVPGS(0.008)S(0.139)ALS(0.483)S(0.37)PRR ; 107.45 0.00024758 710850000 76188 97959 82746 89093 123030 109389 133646 122544 92340 127472 TRUE FALSE FALSE 93135.75775 109414.4529 113357.1887 93959.92499 110780.7012 115116.4389 105091.4403 92489.89186 110871.791 95695.57635 0.973250398 1.143359569 1.184560385 0.981862784 1.157636596 1.202944204 1.098184935 0.966501226 1.158588466 1 16.54616462 -8.70817447 0.625969834 0.998158473 1.104247023 0.088141765 0.086712077 6.298957874 3.613100047 0.139999516 0.035544974 1.96E-09 8.70817447 0.10608855 VAPGPSSGSTPGQVPGSSALS(ph)SPRR ddPTM_HeLa_A486_30min_R1 1 VAPGPSSGSTPGQVPGSSALSSPRR 25 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.04)S(0.031)ALS(0.648)S(0.281)PRR 100.68 0.00073421 314590000 51978 56936 42600 26731 66569 47504 73618 57762 38399 69088 TRUE FALSE FALSE 48334.61061 52424.184 59095.86087 62231.11891 58219.29529 41643.43947 55197.99775 44610.85354 41727.45624 51787.91511 0.933318333 1.01228605 1.141112955 1.201653296 1.124186891 0.804115002 1.065847073 0.861414356 0.805737326 1 15.66032786 -6.247419999 24.99308184 0.908662666 1.088484723 0.424758747 0.101754631 816.6725407 1455925.678 0.03530086 0.035133523 5.66E-07 6.247419999 0.179822056 VAPLWHSS(ph)SEVISMADR ddPTM_HeLa_A485_30min_R1 4 VAPLWHSSSEVISMADR 17 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 VAPLWHS(0.002)S(0.998)S(0.001)EVISMADR;VAPLWHS(0.049)S(0.948)S(0.003)EVISMADR;VAPLWHS(0.044)S(0.956)SEVISMADR;VAPLWHS(0.011)S(0.982)S(0.007)EVISMADR ;;; 166.6 4.18E-12 547413000 210140 248998 248099 167059.5 311874 234489.3 268312 313360 223637 250530 TRUE FALSE FALSE 256884.918 278116.1501 339881.1444 176185.5375 280822.7295 246766.7972 210984.9493 236507.9687 268518.8946 188077.4817 1.365846223 1.478731785 1.807133642 0.936771037 1.493122553 1.312048603 1.121798035 1.257502847 1.427703584 1 17.5209676 -1.000000015 0.035303436 7.29E-12 3.379151725 0.237209859 0.213698775 1429.097532 3.863861465 108.8567589 308.0220174 0.099999997 1.000000015 3.379151725 VAPLWHSS(ph)SEVISMADR ddPTM_HeLa_A486_30min_R1 2 VAPLWHSSSEVISMADR 17 0 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 VAPLWHS(0.014)S(0.984)S(0.002)EVISMADR;VAPLWHS(0.009)S(0.99)S(0.001)EVISMADR ; 174.02 1.56E-12 148037000 95504 98933 94159 28558 130585 85359 104333 106127 83018 92245 TRUE FALSE FALSE 88809.66278 91093.18877 130619.8865 66484.46724 114205.8116 74828.27445 78227.77988 81964.19884 90214.06708 69146.25159 1.284374218 1.317398799 1.88903785 0.961505009 1.65165586 1.082173982 1.13133797 1.185374434 1.304684853 1 16.07736342 -6.287338143 24.93933533 1.151714116 1.415547642 0.256691802 0.237852003 1114.267218 1072984.982 0.080599342 0.071105597 5.16E-07 6.287338143 0.263833526 VAPPYPHLFSSCSPPGMVLDGS(ph)PK ddPTM_HeLa_A485_30min_R1 2 VAPPYPHLFSSCSPPGMVLDGSPK 24 0 Q9BUK6-2;Q9BUK6;V9GYF2;Q9BUK6-6;Q9BUK6-5 Q9BUK6-2 MSTO1 Protein misato homolog 1 1 0 VAPPYPHLFSSCSPPGMVLDGS(1)PK;VAPPYPHLFSSCSPPGMVLDGS(1)PK ; 245.53 2.97E-49 750410000 200697 175516 133676 256950 257220 193945 320810 351420 171510 403670 TRUE FALSE FALSE 245341.3553 196041.0694 183128.3151 270986.5279 231610.2736 204099.6603 252266.3227 265233.694 205930.4838 303042.498 0.809593892 0.646909495 0.604299121 0.894219556 0.764283146 0.673501775 0.832445365 0.875235968 0.679543249 1 18.2091606 -14 0.160158053 1.916008979 0.687538946 0.380188775 0.094593945 140.2662003 1.288862564 40.79533791 0.40676992 1.00E-14 14 -1.228470032 VAPPYPHLFSSCSPPGMVLDGS(ph)PK ddPTM_HeLa_A486_30min_R1 2 VAPPYPHLFSSCSPPGMVLDGSPK 24 0 Q9BUK6-2;Q9BUK6;V9GYF2;Q9BUK6-6;Q9BUK6-5 Q9BUK6-2 MSTO1 Protein misato homolog 1 1 0 VAPPYPHLFSSCSPPGMVLDGS(1)PK;VAPPYPHLFSSCSPPGMVLDGS(1)PK ; 242.74 4.17E-49 713960000 300580 356550 171280 58352 342290 375070 526130 428140 280160 424560 TRUE FALSE FALSE 279510.8942 328295.6795 237604.203 135846.4049 299356.7965 328797.6768 394486.7092 330661.8682 304444.4944 318247.4126 0.878281749 1.031573758 0.746602152 0.426857846 0.940641729 1.033151139 1.239559832 1.039008819 0.956628341 1 18.27978926 -5.994094935 24.99908348 1.058744807 0.77472637 0.419328309 0.156880567 167.276673 708158.3328 0.053275533 0.060247475 1.01E-06 5.994094935 -0.284018437 VAPVINNGS(ph)PTILGK ddPTM_HeLa_A485_30min_R1 4 VAPVINNGSPTILGK 15 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 VAPVINNGS(1)PTILGK;VAPVINNGS(0.98)PT(0.02)ILGK;VAPVINNGS(0.996)PT(0.004)ILGK;VAPVINNGS(0.999)PT(0.001)ILGK ;;; 328 3.02E-90 2068050000 2345480 2170896 1962208 2869900 2892530 2333085 3009930 2668360 2229663 3734910 TRUE FALSE FALSE 2867223.934 2424763.403 2688110.393 3026675.37 2604539.557 2455241.723 2366833.867 2013940.526 2677135.912 2803865.673 1.022596753 0.864792999 0.958715826 1.079465182 0.928910248 0.875663106 0.844132402 0.718272828 0.954801772 1 21.4189858 -6.177644432 3.442128459 0.857783744 0.973976169 0.214747571 0.086997485 0.338245566 7.702650736 0.030216344 0.029803308 6.64E-07 6.177644432 0.116192425 VAPVINNGS(ph)PTILGK ddPTM_HeLa_A486_30min_R1 4 VAPVINNGSPTILGK 15 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 VAPVINNGS(1)PTILGK;VAPVINNGS(0.999)PT(0.001)ILGK;VAPVINNGS(0.984)PT(0.016)ILGK;VAPVINNGS(0.978)PT(0.022)ILGK ;;; 350.96 4.29E-104 3068080000 1307910 1412620 831417 488815 1293930 1235840 1400340 1387980 1076585 1401790 TRUE FALSE FALSE 1216232.263 1300678.847 1153363.929 1137986.023 1131633.234 1083374.626 1049960.121 1071967.253 1169904.255 1050772.66 1.157464701 1.23783088 1.097634124 1.08299927 1.076953443 1.03102666 0.999226722 1.020170484 1.113375233 1 20.00301914 -5.136356643 1.23240946 1.03632806 1.20381822 0.680803961 0.040437709 0.297146254 0.830836052 0.013730283 0.04258402 7.31E-06 5.136356643 0.16749016 VAPVINNGS(ph)PTILGKR ddPTM_HeLa_A485_30min_R1 2 VAPVINNGSPTILGKR 16 1 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 VAPVINNGS(0.817)PT(0.183)ILGKR;VAPVINNGS(0.997)PT(0.003)ILGKR ; 193.34 1.62E-18 2387900000 382478 783680 405254 231203 661120 771090 895910 1573170 414570 379564 TRUE FALSE FALSE 467558.9116 875324.5589 555174.3186 243833.0345 595296.5715 811463.0801 704491.5096 1187347.591 497770.3963 284945.6802 1.640870328 3.071899733 1.948351413 0.855717603 2.089158085 2.847781653 2.472371258 4.166926097 1.746895745 1 18.1203274 -6.141585972 5.600334234 2.642878442 1.914114789 0.05809491 0.918711547 0.514292465 21.59301949 0.302392803 0.303129846 7.22E-07 6.141585972 -0.728763652 VAPVINNGS(ph)PTILGKR ddPTM_HeLa_A486_30min_R1 2 VAPVINNGSPTILGKR 16 1 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 VAPVINNGS(0.995)PT(0.005)ILGKR;VAPVINNGS(0.998)PT(0.002)ILGKR ; 216.35 7.03E-34 1521910000 862320 609850 435420 266270 847170 480370 745480 831950 433350 860960 TRUE FALSE FALSE 801875.821 561523.265 604026.285 619890.0165 740910.0391 421106.8334 558953.0191 642533.1463 470913.1269 645370.0121 1.242505549 0.870079574 0.935937948 0.96051878 1.148039148 0.652504494 0.866096981 0.99560428 0.729679282 1 19.29976702 -6.247513067 24.98420092 0.849584759 1.013209949 0.29278045 0.140508399 1151.317086 2065496.727 0.045662623 0.045441914 5.66E-07 6.247513067 0.16362519 VAQGATEKS(ph)PEDK ddPTM_HeLa_A485_30min_R1 4 VAQGATEKSPEDK 13 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VAQGATEKS(1)PEDK;VAQGATEKS(1)PEDK;VAQGAT(0.004)EKS(0.996)PEDK;VAQGATEKS(1)PEDK ;;; 178 1.15E-13 3069470000 2607010 1398120 979790 7311190 2176630 1985390 3879780 2518950 1504010 9208060 TRUE FALSE FALSE 3186930.38 1561617.972 1342255.093 7710581.797 1959917.075 2089341.95 3050833.308 1901173.563 1805851.011 6912660.104 0.461028075 0.225906952 0.194173455 1.115429036 0.28352574 0.302248616 0.441339985 0.27502778 0.261238219 1 22.72080956 -10.31089506 3.152765642 1.00404226 0.397570738 0.336672747 0.254518749 57255160.77 76955958.48 2177120.493 0.065677808 4.89E-11 10.31089506 -0.606471522 VAQGATEKS(ph)PEDK ddPTM_HeLa_A486_30min_R1 6 VAQGATEKSPEDK 13 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VAQGATEKS(1)PEDK;VAQGAT(0.001)EKS(0.999)PEDK;VAQGATEKS(1)PEDK;VAQGAT(0.001)EKS(0.999)PEDK;VAQGATEKS(1)PEDK;VAQGAT(0.001)EKS(0.999)PEDK ;;;;; 209.93 9.40E-21 1825800000 1816723 1644823 542086 1779711 1110334 2683250 3333460 2741080 1455185 5263960 TRUE FALSE FALSE 1689380.099 1514481.235 751996.2168 4143257.15 971065.5563 2352217.896 2499393.05 2116995.921 1581321.607 3945830.153 0.428143137 0.383818151 0.190579976 1.050034337 0.246099178 0.596127508 0.633426416 0.53651471 0.400757647 1 21.91189743 -14 0.231745656 3.655786355 0.447649487 0.30220887 0.228455979 207.1253057 2.073112825 258.8827051 0.383043176 1.00E-14 14 -3.208136868 VAQGATEKS(ph)PEDKVQIAANEETQER ddPTM_HeLa_A485_30min_R1 5 VAQGATEKSPEDKVQIAANEETQER 25 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VAQGATEKS(1)PEDKVQIAANEETQER;VAQGAT(0.002)EKS(0.998)PEDKVQIAANEETQER;VAQGATEKS(1)PEDKVQIAANEETQER;VAQGAT(0.03)EKS(0.97)PEDKVQIAANEETQER;VAQGAT(0.009)EKS(0.991)PEDKVQIAANEETQER ;;;; 210.21 3.74E-29 4644600000 1171442 937861 474027 2236170 1060907 1234257 2188380 2136740 802173 2865310 TRUE FALSE FALSE 1432025.231 1047535.686 649389.3132 2358326.305 955279.374 1298880.788 1720814.736 1612701.165 963161.7631 2151040.949 0.665735923 0.486990118 0.301895375 1.096365137 0.444100971 0.603838243 0.799991621 0.749730574 0.447765424 1 21.03660356 -14 0.196351343 2.608664292 0.565061862 0.207390613 0.215639865 225.4449878 2.22205222 142.8789946 0.538272747 1.00E-14 14 -2.043602431 VAQGATEKS(ph)PEDKVQIAANEETQER ddPTM_HeLa_A486_30min_R1 5 VAQGATEKSPEDKVQIAANEETQER 25 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VAQGATEKS(1)PEDKVQIAANEETQER;VAQGAT(0.028)EKS(0.972)PEDKVQIAANEETQER;VAQGAT(0.007)EKS(0.993)PEDKVQIAANEETQER;VAQGAT(0.014)EKS(0.986)PEDKVQIAANEETQER;VAQGAT(0.002)EKS(0.998)PEDKVQIAANEETQER ;;;; 227.58 9.50E-39 4785960000 2263964 1692464 569822 1491516 1185364 2242184 3273740 2703699 1342034 5239740 TRUE FALSE FALSE 2105271.815 1558346.989 790472.3388 3472324.625 1036684.594 1965566.135 2454615.626 2088125.759 1458362.588 3927674.999 0.536009679 0.396760676 0.201257064 0.884066178 0.263943578 0.500440117 0.624953853 0.531644232 0.371304293 1 21.90524413 -11.30464965 2.25869342 3.534091505 0.480417783 0.422753996 0.182656586 22037004.41 3027528.247 285062113.2 0.044664945 4.96E-12 11.30464965 -3.053673722 VAQPTITDNKDGTVTVR ddPTM_HeLa_A485_30min_R1 1 VAQPTITDNKDGTVTVR 17 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 0 176.21 1.24E-13 42347000 20547 25419 18683 23901 33928 30547 38212 45253 27070 36426 FALSE FALSE TRUE 25117.60926 28391.53093 25594.61916 25206.65111 30550.00919 32146.39369 30047.69404 34154.6308 32502.7007 27345.66857 0.918522405 1.038245997 0.935966115 0.921778564 1.117179092 1.175557058 1.098809998 1.248996005 1.1885868 1 14.73902471 -5.851600317 5.000957189 1.153979634 0.958758568 0.629889585 0.069035961 0.129071202 5.432204114 0.021133439 0.024319175 1.41E-06 5.851600317 -0.195221066 VAQRS(ph)PVDSGTILR ddPTM_HeLa_A485_30min_R1 2 VAQRSPVDSGTILR 14 1 P49454 P49454 CENPF Centromere protein F 1 0 VAQRS(1)PVDSGTILR;VAQRS(0.984)PVDS(0.013)GT(0.003)ILR ; 136.43 4.40E-06 1033090000 236330 324760 299840 256960 383360 278540 374160 308340 267590 341410 TRUE FALSE FALSE 288900.7932 362737.857 410763.2934 270997.0741 345191.3323 293123.9237 294217.6594 232719.1315 321292.8585 256302.7702 1.127185605 1.415270918 1.602648669 1.057331819 1.346810774 1.143662722 1.14793008 0.907985237 1.253567639 1 17.96748955 -6.271195281 1.00603135 1.056083667 1.350609222 0.31674458 0.163176964 0.615520762 1.314867778 0.092611077 0.083374327 5.36E-07 6.271195281 0.294525555 VAQRS(ph)PVDSGTILR ddPTM_HeLa_A486_30min_R1 2 VAQRSPVDSGTILR 14 1 P49454 P49454 CENPF Centromere protein F 1 0 VAQRS(1)PVDSGTILR;VAQRS(0.999)PVDS(0.001)GT(0.001)ILR ; 141.22 2.29E-07 1407430000 354280 356740 325030 111187 455610 360820 395770 412610 307820 394840 TRUE FALSE FALSE 329446.8015 328470.6232 450890.3206 258848.9551 398463.1454 316305.6969 296744.16 318667.7102 334502.0854 295969.494 1.113110669 1.109812429 1.523435116 0.874579848 1.346298025 1.06871047 1.002617384 1.076691067 1.130191091 1 18.17508896 -6.483845993 24.75147733 1.055465471 1.191227239 0.155167328 0.161030726 937.6117334 594559.9438 0.05451722 0.048069553 3.28E-07 6.483845993 0.135761768 VAQRS(ph)PVDSGTILREPTTK ddPTM_HeLa_A485_30min_R1 3 VAQRSPVDSGTILREPTTK 19 2 P49454 P49454 CENPF Centromere protein F 1 0 VAQRS(0.716)PVDS(0.267)GT(0.017)ILREPTTK;VAQRS(0.564)PVDS(0.213)GT(0.213)ILREPT(0.008)T(0.002)K;VAQRS(0.692)PVDS(0.282)GT(0.026)ILREPTTK ;; 150.73 6.33E-09 767270000 345441 444600 389037 379591 768020 619440 769190 1083400 413356 525330 TRUE FALSE FALSE 422283.1587 496592.1025 532957.9755 400327.0952 691553.2321 651872.9206 604846.2728 817694.4513 496312.7577 394374.899 1.070765811 1.259187904 1.351399333 1.015092736 1.753542718 1.652927005 1.533683493 2.073393751 1.258479581 1 18.5892082 -5.763812136 24.99853174 1.603804206 1.192851747 0.275993634 0.284628863 71.45579822 752834.6828 0.081957904 0.097370637 1.72E-06 5.763812136 -0.410952459 VAQRS(ph)PVDSGTILREPTTK ddPTM_HeLa_A486_30min_R1 4 VAQRSPVDSGTILREPTTK 19 2 P49454 P49454 CENPF Centromere protein F 1 0 VAQRS(0.827)PVDS(0.169)GT(0.004)ILREPTTK;VAQRS(1)PVDSGTILREPTTK;VAQRS(0.591)PVDS(0.369)GT(0.04)ILREPTTK;VAQRS(0.957)PVDS(0.041)GT(0.002)ILREPTTK ;;; 172.54 4.03E-13 1529940000 1440920 1309680 1095690 720730 2204710 1482540 2113940 2199000 1069440 1760240 TRUE FALSE FALSE 1339918.949 1205896.187 1519970.512 1677895.864 1928174.714 1299639.288 1585009.853 1698335.704 1162139.92 1319464.447 1.015502125 0.913928518 1.151960188 1.271649166 1.461331314 0.984974844 1.201252415 1.287140179 0.880766377 1 20.33152105 -4.820226323 6.561404085 1.176929898 0.965295462 0.170357642 0.162482036 0.281922303 23.9266442 0.042276095 0.090701522 1.51E-05 4.820226323 -0.211634436 VAQRSPVDS(ph)GTILREPTTK ddPTM_HeLa_A485_30min_R1 1 VAQRSPVDSGTILREPTTK 19 2 P49454 P49454 CENPF Centromere protein F 1 0 VAQRS(0.144)PVDS(0.854)GT(0.002)ILREPTTK 191.65 7.11E-19 383560000 223820 281690 237880 254980 492440 393080 508240 700460 281750 367050 TRUE FALSE FALSE 273607.9868 314631.1951 325881.711 268908.9118 443410.9445 413661.061 399650.3721 528671.0867 338294.6406 275551.1901 0.992947941 1.141824846 1.182653978 0.975894576 1.609178115 1.501213117 1.45036707 1.918594823 1.227701614 1 18.07196083 -5.761483556 25 1.499566983 1.086031602 0.37492795 0.233825559 1.114930869 630845.5821 0.067098823 0.081091206 1.73E-06 5.761483556 -0.41353538 VAS(ph)DTEEADR ddPTM_HeLa_A485_30min_R1 2 VASDTEEADR 10 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 VAS(0.998)DT(0.002)EEADR;VAS(0.998)DT(0.002)EEADR ; 187.58 9.06E-10 2036370000 1298220 1322770 1260000 1781760 1578360 1181650 1596940 1331990 1307340 2393390 TRUE FALSE FALSE 1587004.56 1477456.445 1726126.433 1879093.037 1421212.936 1243519.367 1255740.723 1005317.364 1569711.146 1796761.92 0.883258123 0.822288378 0.960687342 1.04582194 0.790985673 0.692089115 0.698890993 0.559516179 0.873633356 1 20.77696783 -5.959265113 8.922335247 0.734055205 0.922647658 0.270241698 0.123255333 0.341154099 69.3217141 0.03758998 0.04256011 1.10E-06 5.959265113 0.188592452 VAS(ph)DTEEADR ddPTM_HeLa_A486_30min_R1 2 VASDTEEADR 10 0 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 VAS(0.997)DT(0.003)EEADR;VAS(1)DTEEADR ; 251.51 5.24E-22 2243400000 1862240 2285200 1509600 780310 2216100 2325300 2315300 2377900 2012600 2386400 TRUE FALSE FALSE 1731706.593 2104112.429 2094157.548 1816601.115 1938136.074 2038428.128 1735987.451 1836504.079 2187053.788 1788829.907 0.968066659 1.176250699 1.170685676 1.015524789 1.083465826 1.139531556 0.970459765 1.026651037 1.222616963 1 20.77058478 -5.267331366 24.86069983 1.06645242 1.112125979 0.039416353 0.087246763 1493.901634 6303374.123 0.024262175 0.036981749 5.40E-06 5.267331366 0.045673559 VAS(ph)EEEEVPLVVYLK ddPTM_HeLa_A485_30min_R1 4 VASEEEEVPLVVYLK 15 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 VAS(1)EEEEVPLVVYLK;VAS(1)EEEEVPLVVYLK;VAS(1)EEEEVPLVVYLK;VAS(1)EEEEVPLVVYLK ;;; 230.97 3.25E-34 136516000 234112 215126 160661 308090 313428 246691 385064 367575 249597 433711 TRUE FALSE FALSE 286189.4067 240283.1144 220096.1896 324920.1766 282222.0078 259607.3593 302791.9307 277426.6549 299688.8285 325594.8296 0.878974052 0.737981972 0.675981833 0.997927937 0.866788973 0.797332561 0.929965415 0.852060996 0.920434851 1 18.31271826 -7.040798043 0.098916082 1.156681456 0.603027882 0.30939414 0.083098144 15.38561275 1.253127411 2.986081468 3.550615018 9.10E-08 7.040798043 -0.553653574 VAS(ph)EEEEVPLVVYLK ddPTM_HeLa_A486_30min_R1 4 VASEEEEVPLVVYLK 15 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 VAS(1)EEEEVPLVVYLK;VAS(1)EEEEVPLVVYLK;VAS(1)EEEEVPLVVYLK;VAS(1)EEEEVPLVVYLK ;;; 242.38 2.95E-41 150616000 218688 213821 140159 113292 238406 259374 324130 317316 187406 315934 TRUE FALSE FALSE 203359.1005 196877.0452 194432.3184 263749.5015 208502.8964 227375.073 243029.2457 245070.0738 203650.503 236822.07 0.858699953 0.83132896 0.821005907 1.113703218 0.88042004 0.960109305 1.026210292 1.034827851 0.859930424 1 17.85344401 -5.221231628 24.99222175 0.980298822 0.836443276 0.474906785 0.069927054 447.038898 277868.5944 0.01837666 0.031828762 6.01E-06 5.221231628 -0.143855545 VAS(ph)FRK ddPTM_HeLa_A485_30min_R1 1 VASFRK 6 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 VAS(1)FRK 55.531 0.029123 252940000 137500 121540 103160 164460 193790 148300 208180 217770 131880 231740 TRUE FALSE FALSE 168086.4006 135753.0457 141323.1768 173444.0334 174495.5872 156064.7587 163700.6423 164361.566 158347.1063 173971.4829 0.966172144 0.780317806 0.812335301 0.996968184 1.003012587 0.897070923 0.940962505 0.94476154 0.910190013 1 17.40849132 -5.257878163 24.99326056 0.952696034 0.845679353 0.410773796 0.056332465 298.244027 2093121.239 0.015475639 0.025498661 5.52E-06 5.257878163 -0.107016681 VAS(ph)FRK ddPTM_HeLa_A486_30min_R1 2 VASFRK 6 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 VAS(1)FRK;VAS(1)FRK ; 75.854 0.014356 412400000 325740 364750 221430 160911 405050 403090 465780 455790 265710 424170 TRUE FALSE FALSE 302907.3081 335845.8816 307173.6261 374608.94 354244.8521 353360.8541 349236.9175 352016.5668 288741.9567 317955.0711 0.952673304 1.05626836 0.966091294 1.178181995 1.114134934 1.111354673 1.098384486 1.107126757 0.908121879 1 18.27846339 -5.227480348 24.9898232 1.082621498 0.998136718 0.195976352 0.074531228 1000.705574 736399.4162 0.020004674 0.034646779 5.92E-06 5.227480348 -0.084484779 S(ph)FEERVETTVTSLK ddPTM_HeLa_A485_30min_R1 1 SFEERVETTVTSLK 14 1 E9PNK6;E9PPQ1;J3KNE7;Q16890-5;Q16890 E9PNK6 TPD52L1 Tumor protein D53 1 0 S(1)FEERVETTVTSLK 63.145 0.010759 41345000 25054 27887 38563 54794 94185 47506 93064 129240 71244 100580 TRUE FALSE FALSE 30627.17586 31148.14207 52829.05844 57787.25747 84807.6107 49993.3407 73180.11614 97543.68736 85542.01731 75507.25704 0.40561897 0.412518522 0.699655378 0.765320576 1.123171653 0.662099812 0.969179904 1.291845197 1.132897958 1 16.20432769 -4.734106971 0.466770561 1.124257933 0.008508899 0.717361414 0.154118819 1.763263605 0.409791595 0.11913051 1.037766743 1.84E-05 4.734106971 -1.115749035 down VAS(ph)FSIPGSSSR ddPTM_HeLa_A486_30min_R1 2 VASFSIPGSSSR 12 0 Q14573 Q14573 ITPR3 "Inositol 1,4,5-trisphosphate receptor type 3" 1 0 VAS(0.836)FS(0.164)IPGSSSR;VAS(0.99)FS(0.01)IPGSSSR ; 112.02 0.00047976 0 173099 178889 127420 159912 192402 215530 248280 245040 139097 295750 TRUE FALSE FALSE 160965.654 164713.1841 176760.4364 372283.2175 168269.1471 188940.0999 186157.718 189249.7412 151154.04 221692.275 0.726076964 0.742981162 0.797323391 1.679279161 0.759021247 0.852262894 0.839712245 0.853659611 0.681819157 1 17.75819897 VAS(ph)LTLHNK ddPTM_HeLa_A485_30min_R1 2 VASLTLHNK 9 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 VAS(0.956)LT(0.044)LHNK;VAS(0.96)LT(0.04)LHNK ; 99.283 0.0014963 975830000 741290 669430 531870 922540 1042530 814480 1079780 1121510 643510 1136870 TRUE FALSE FALSE 906187.4031 747714.0152 728630.846 972936.0242 938732.0527 857124.9134 849076.182 846457.914 772656.5544 853469.2315 1.06176927 0.87608784 0.853728311 1.139977855 1.099901459 1.00428332 0.994852715 0.991784921 0.905312723 1 19.70297962 -5.242366679 24.99401497 1.020798403 0.925084423 0.209685108 0.07886278 1307.615265 1713575.825 0.022503525 0.038899765 5.72E-06 5.242366679 -0.09571398 VAS(ph)LTLHNK ddPTM_HeLa_A486_30min_R1 2 VASLTLHNK 9 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3;Q9P0K7-4 RAI14 Ankycorbin 1 0 VAS(0.998)LT(0.002)LHNK;VAS(0.991)LT(0.009)LHNK ; 109.24 0.00071457 677340000 1050470 1114450 688820 421250 1057940 1195680 1410700 1394370 920570 1246960 TRUE FALSE FALSE 976837.4776 1026136.923 955549.5512 980691.2888 925243.3003 1048169.158 1057727.939 1076902.39 1000365.749 934713.0997 1.045066639 1.097809503 1.022291815 1.049189627 0.989868764 1.121380623 1.131607056 1.152120785 1.070238289 1 19.83416409 -6.286435887 24.95762095 1.106860511 1.043442771 0.231831042 0.046841241 942.6645282 941194.7887 0.016051853 0.014162147 5.17E-07 6.286435887 -0.06341774 VAS(ph)PTSGVK ddPTM_HeLa_A485_30min_R1 4 VASPTSGVK 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAS(0.993)PT(0.007)SGVK;VAS(0.981)PT(0.017)S(0.002)GVK;VAS(0.689)PT(0.254)S(0.057)GVK;VAS(0.987)PT(0.011)S(0.002)GVK ;;; 155.53 4.00E-05 4558340000 6324880 5271140 4333400 8609100 7281600 6053520 8827000 8056400 5587230 11464000 TRUE FALSE FALSE 7731827.735 5887553.97 5936504.988 9079393.334 6556618.337 6370472.947 6941039.34 6080555.268 6708535.812 8606235.779 0.898398316 0.684103262 0.689791117 1.054978456 0.761845074 0.740215945 0.806512803 0.706529013 0.779497098 1 23.03695093 -10.09065055 4.409021327 1.00001955 0.788517321 0.255670489 0.106722184 144674721.5 0.039373131 30400.66025 0.025908314 8.12E-11 10.09065055 -0.211502229 VAS(ph)PTSGVK ddPTM_HeLa_A486_30min_R1 5 VASPTSGVK 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAS(0.906)PT(0.094)SGVK;VAS(0.911)PT(0.079)S(0.01)GVK;VAS(0.848)PT(0.133)S(0.019)GVK;VAS(0.869)PT(0.128)S(0.003)GVK;VAS(0.993)PT(0.005)S(0.002)GVK ;;;; 143.28 0.00011188 4816575000 8454080 9100830 4866060 3606573 8332670 9769970 11189190 10290860 7285460 11354890 TRUE FALSE FALSE 7861492.649 8379647.086 6750328.75 8396284.21 7287508.83 8564650.435 8389536.315 7947855.826 7916969.539 8511551.636 0.923626265 0.984502878 0.793078517 0.986457531 0.856190403 1.006238439 0.985664738 0.93377285 0.9301441 1 23.02099073 -6.271704776 24.97152237 0.96793112 0.910866983 0.223431619 0.057937571 1201.115749 2921816.137 0.019739055 0.017606939 5.35E-07 6.271704776 -0.057064138 VAS(ph)PTSGVKR ddPTM_HeLa_A485_30min_R1 5 VASPTSGVKR 10 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAS(0.743)PT(0.236)S(0.021)GVKR;VAS(0.994)PT(0.006)SGVKR;VAS(0.96)PT(0.04)SGVKR;VAS(0.901)PT(0.098)SGVKR;VAS(0.981)PT(0.019)SGVKR ;;;; 122.39 9.11E-05 5659250000 1938680 2197710 1638060 1947100 2730340 2576360 3364350 4155310 1883290 2664240 TRUE FALSE FALSE 2369932.678 2454713.067 2244046.559 2053465.143 2458497.763 2711254.226 2645529.138 3136213.707 2261249.028 2000094 1.184910648 1.227298851 1.121970547 1.026684317 1.22919111 1.355563402 1.322702402 1.568033156 1.130571378 1 20.93163637 -5.999185678 24.99999982 1.31145007 1.142983604 0.134400129 0.148478867 42.78339542 1313384.115 0.04480783 0.050385257 1.00E-06 5.999185678 -0.168466466 VAS(ph)PTSGVKR ddPTM_HeLa_A486_30min_R1 4 VASPTSGVKR 10 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAS(0.997)PT(0.003)SGVKR;VAS(0.997)PT(0.003)SGVKR;VAS(0.574)PT(0.422)S(0.003)GVKR;VAS(0.918)PT(0.074)S(0.008)GVKR ;;; 113.95 0.00032863 4901100000 1463260 1281140 796087 522958 1520070 1330850 1663630 1632680 935620 1751690 TRUE FALSE FALSE 1360693.03 1179617.801 1104353.206 1217472.653 1329408.647 1166663.258 1247372.178 1260954.405 1016720.295 1313055.422 1.036279967 0.898376246 0.84105605 0.927205838 1.012454329 0.888510293 0.949976792 0.960320778 0.77431636 1 20.32449638 -10.38579987 5.33815875 1.000041129 0.92186442 0.094922522 0.073184556 3.50E-05 4.03E-06 0.069204743 0.016775789 4.11E-11 10.38579987 -0.078176709 VAS(ph)SPAPPEGPSHPR ddPTM_HeLa_A485_30min_R1 2 VASSPAPPEGPSHPR 15 0 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.5)S(0.5)PAPPEGPSHPR;VAS(0.5)S(0.5)PAPPEGPSHPR ; 137.44 4.96E-06 1070130000 297470 280190 375220 382900 453980 301510 300530 285620 332040 489960 TRUE FALSE FALSE 363641.1752 312955.7832 514029.4922 403816.8574 408780.1572 317296.5974 236319.3104 215571.2472 398677.3823 367821.989 0.988633595 0.850834894 1.397495276 1.09785948 1.111353234 0.862636294 0.642482824 0.586074932 1.083886756 1 18.4886482 -6.348777855 4.190730698 0.789547581 1.093878946 0.302488797 0.189175366 0.2647124 8.452938641 0.069994112 0.06158035 4.48E-07 6.348777855 0.304331366 VAS(ph)SPAPPEGPSHPR ddPTM_HeLa_A486_30min_R1 3 VASSPAPPEGPSHPR 15 0 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.5)S(0.5)PAPPEGPSHPR;VAS(0.5)S(0.5)PAPPEGPSHPR;VAS(0.5)S(0.5)PAPPEGPSHPR ;; 88.551 0.00094574 1119600000 421620 540160 499090 158107 566750 510440 489060 523210 450870 464500 TRUE FALSE FALSE 392066.6152 497355.7544 692351.0141 368081.0863 495662.9303 447467.1026 366692.0153 404086.5046 489951.7746 348186.1766 1.126025792 1.428419012 1.988450607 1.057138712 1.423557176 1.285137471 1.053149263 1.160547235 1.407154584 1 18.4094994 -5.933599585 1.335454896 1.180130505 1.467078497 0.168456377 0.254114863 0.770966478 2.864057788 0.107432372 0.128862474 1.17E-06 5.933599585 0.286947993 VAS(ph)SPAPPEGPSHPREPSTPHR ddPTM_HeLa_A485_30min_R1 1 VASSPAPPEGPSHPREPSTPHR 22 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.532)S(0.468)PAPPEGPSHPREPSTPHR 71.656 0.0039052 450950000 69708 141530 115500 50110 136870 140760 156960 190570 93942 79810 TRUE FALSE FALSE 85214.30411 158080.7024 158228.2564 52847.38241 123242.7422 148129.9759 123424.2138 143832.4087 112795.2977 59914.83579 1.422257159 2.63842336 2.640886089 0.88204168 2.056965367 2.472342183 2.059994192 2.400614252 1.882593789 1 15.87062566 -8.02913065 21.87470729 0.99999998 2.086076117 0.271055602 0.524682717 842.8004333 632874.6042 0.509637024 0.131587714 9.35E-09 8.02913065 1.086076137 VAS(ph)SPAPPEGPSHPREPSTPHR ddPTM_HeLa_A486_30min_R1 1 VASSPAPPEGPSHPREPSTPHR 22 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.5)S(0.5)PAPPEGPSHPREPSTPHR 48.489 0.025216 289390000 84318 79528 68795 9425.9 110450 62355 81229 83992 59292 77628 TRUE FALSE FALSE 78407.74362 73225.91164 95434.26639 21943.97156 96596.33109 54662.27408 60904.64505 64868.85513 64431.4783 58189.44353 1.347456495 1.258405429 1.640061506 0.377112587 1.660031876 0.939384719 1.046661411 1.114787343 1.107270914 1 15.82846983 VAS(ph)SSQRSR ddPTM_HeLa_A485_30min_R1 1 VASSSQRSR 9 1 Q8IX06 Q8IX06 REXO1L1P Putative exonuclease GOR 1 0 VAS(0.99)S(0.01)SQRSR 54.784 0.020556 12822000000 2011300 1998100 2101000 2599100 2892000 2317700 3115700 2964200 2142800 3682700 TRUE FALSE FALSE 2458706.746 2231760.414 2878247.33 2741082.252 2604062.326 2439051.188 2450005.242 2237225.302 2572840.305 2764670.665 0.88933079 0.807242773 1.041081445 0.991467912 0.941906882 0.882221242 0.886183397 0.80921946 0.930613667 1 21.3986762 -6.260752962 23.94951042 0.888757259 0.936271198 0.032563091 0.073087533 98.45258383 3435112.439 0.025924504 0.024482215 5.49E-07 6.260752962 0.047513939 VASASAGSCDVPS(ph)PFNHRPGSHLDSHR ddPTM_HeLa_A485_30min_R1 3 VASASAGSCDVPSPFNHRPGSHLDSHR 27 1 Q16643;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 0 VASASAGSCDVPS(0.969)PFNHRPGS(0.03)HLDS(0.001)HR;VASASAGSCDVPS(0.9)PFNHRPGS(0.084)HLDS(0.016)HR;VASASAGSCDVPS(0.916)PFNHRPGS(0.036)HLDS(0.048)HR ;; 184.25 2.00E-20 1446570000 56056.9 77105.6 99225.7 53105.4 123092.6 75910 77389.1 90862 91618.3 91599 TRUE FALSE FALSE 68526.56401 86122.42919 135933.4156 56006.41353 110837.0685 79884.53022 60854.28657 68577.95203 110005.2524 68765.05505 0.996531799 1.252415622 1.976780437 0.81446039 1.611822581 1.161702411 0.884959469 0.997279097 1.599726087 1 16.06938798 -6.501983711 24.18057378 1.106416763 1.338660715 0.078468432 0.345936924 1296.165065 1499977.903 0.120880571 0.105360054 3.15E-07 6.501983711 0.232243953 VASASAGSCDVPS(ph)PFNHRPGSHLDSHR ddPTM_HeLa_A486_30min_R1 4 VASASAGSCDVPSPFNHRPGSHLDSHR 27 1 Q16643;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 0 VASASAGSCDVPS(0.941)PFNHRPGS(0.044)HLDS(0.015)HR;VASASAGSCDVPS(0.82)PFNHRPGS(0.143)HLDS(0.037)HR;VASASAGSCDVPS(0.808)PFNHRPGS(0.137)HLDS(0.055)HR;VASASAGSCDVPS(0.979)PFNHRPGS(0.015)HLDS(0.006)HR ;;; 188.8 1.28E-20 1670320000 66313.1 83149.4 98395.1 15548.6 100319.2 59247.9 74428.6 67529 60535.7 53325.3 TRUE FALSE FALSE 61664.89413 76560.33872 136496.3178 36197.92658 87736.2305 51938.49649 55805.77705 52154.12085 65782.98322 39972.29779 1.542690752 1.915334943 3.414772865 0.905575326 2.19492587 1.299362292 1.396111311 1.304756637 1.645714329 1 15.28671289 -5.297083374 24.99999904 1.434770617 2.253374849 0.351574132 0.556446785 682.5638212 478735.4328 0.154329854 0.22891778 5.05E-06 5.297083374 0.818604233 VASASAGSCDVPS(ph)PFNHRPGSHLDSHRR ddPTM_HeLa_A485_30min_R1 1 VASASAGSCDVPSPFNHRPGSHLDSHRR 28 2 Q16643;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 0 VASASAGS(0.003)CDVPS(0.991)PFNHRPGS(0.003)HLDS(0.004)HRR 168.69 3.06E-14 822590000 14974 24642 23580 17220 27711 22070 20640 29373 0 9969.8 TRUE FALSE FALSE 18304.91464 27523.66754 32303.22325 18160.685 24951.99554 23225.55107 16230.09539 22169.22569 0 7484.512341 2.44570572 3.677416282 4.316009083 2.426435307 3.333817142 3.10314821 2.168490698 2.96201338 0 1 12.8696926 -7.752924455 24.83772154 0.499999925 3.077481194 0.716764071 0.642093344 78.84777095 230001.2491 0.461601315 0.168187707 1.77E-08 7.752924455 2.577481268 VASASAGSCDVPS(ph)PFNHRPGSHLDSHRR ddPTM_HeLa_A486_30min_R1 2 VASASAGSCDVPSPFNHRPGSHLDSHRR 28 2 Q16643;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 0 VASASAGSCDVPS(0.99)PFNHRPGS(0.004)HLDS(0.006)HRR;VASASAGSCDVPS(0.893)PFNHRPGS(0.044)HLDS(0.063)HRR ; 173.64 1.51E-14 1263700000 30545 10628 27330 0 32042 20205 20767 29436 6008.8 9131.5 TRUE FALSE FALSE 28403.95323 9785.798573 37912.90792 0 28022.99358 17712.31253 15570.87695 22734.06538 6529.647622 6844.912964 4.149644179 1.429645435 5.538844412 0 4.093988299 2.587660738 2.274810072 3.321308175 0.953941658 1 12.74081648 -7.769480924 24.83583739 0.976968999 2.870421777 0.221812242 1.456304562 261.368321 807185.6513 1.198241554 0.331449566 1.70E-08 7.769480924 1.893452778 VASASAGSCDVPSPFNHRPGSHLDS(ph)HRR ddPTM_HeLa_A485_30min_R1 1 VASASAGSCDVPSPFNHRPGSHLDSHRR 28 2 Q16643;Q16643-2;D6R9Q9 Q16643 DBN1 Drebrin 1 0 VASASAGSCDVPS(0.043)PFNHRPGS(0.29)HLDS(0.667)HRR 168.26 3.20E-14 808500000 23635 44508 36792 32967 47005 35587 40895 66034 32575 32938 TRUE FALSE FALSE 28892.52421 49712.82343 50402.89184 34767.90373 42325.01716 37450.28029 32157.44917 49839.05796 39112.5037 24727.16278 1.168452866 2.010454005 2.038361307 1.406061182 1.711681099 1.514540128 1.300490859 2.0155591 1.581762698 1 14.59380909 -5.285456772 24.95975083 1.547189861 1.766225973 0.082483195 0.334652145 1967.142297 2044321.72 0.092475425 0.137241849 5.18E-06 5.285456772 0.219036112 VASEAPLEHKPQVEAS(ph)SPR ddPTM_HeLa_A485_30min_R1 3 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 VASEAPLEHKPQVEAS(0.5)S(0.5)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR ;; 223.44 5.13E-35 4455090000 1297510 1537280 1252850 1538390 1897270 1670610 2063220 2299310 1402800 2124480 TRUE FALSE FALSE 1586136.623 1717051.523 1716331.35 1622428.35 1708371.137 1758080.556 1622396.192 1735400.617 1684329.093 1594886.234 0.994513959 1.076598121 1.07614657 1.017269016 1.071155485 1.102323488 1.017248853 1.088103076 1.056081027 1 20.60502209 -4.251223536 23.86102521 1.058969481 0.994513891 0.242235918 0.032323273 1030.777583 2407483.121 0.007591529 0.099119048 5.61E-05 4.251223536 -0.06445559 VASEAPLEHKPQVEAS(ph)SPR ddPTM_HeLa_A486_30min_R1 3 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 VASEAPLEHKPQVEAS(0.658)S(0.342)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR ;; 232.87 5.27E-36 4466700000 1708580 1752150 1178910 470220 1881200 1794440 2005510 2067580 1444850 1915650 TRUE FALSE FALSE 1588817.365 1613303.253 1635415.524 1094695.924 1645242.355 1573060.237 1503710.186 1596837.169 1570090.761 1435958.771 1.106450545 1.123502488 1.138901448 0.762344954 1.145744841 1.0954773 1.047182006 1.112035527 1.09340936 1 20.4535829 VASEAPLEHKPQVEASS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 VASEAPLEHKPQVEAS(0.202)S(0.798)PR 222.21 5.73E-35 1649700000 1151100 1298300 1091500 1500700 1761500 1459300 1900800 2131400 1272300 1956200 TRUE FALSE FALSE 1407158.224 1450124.891 1495291.271 1582679.441 1586118.875 1535706.691 1494678.552 1608670.808 1527638.94 1468555.341 0.958192166 0.987449945 1.018205599 1.077711814 1.080053867 1.045726129 1.017788373 1.09541041 1.040232463 1 20.4859662 -4.823113041 2.285691316 1.054364791 0.964818877 0.554557175 0.027939355 0.212966727 2.181810879 0.007630486 0.024112397 1.50E-05 4.823113041 -0.089545914 VASEAPLEHKPQVEASS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 VASEAPLEHKPQVEAS(0.331)S(0.669)PR 202.73 7.04E-26 1250200000 434190 446510 257410 103590 470500 412720 500270 458150 320700 454500 TRUE FALSE FALSE 403755.5232 411126.9214 357086.0457 241162.7551 411485.5028 361802.8026 375097.1547 353839.2463 348498.5342 340690.2417 1.185110325 1.206746983 1.048125253 0.707865168 1.207799498 1.061969961 1.100991777 1.03859519 1.022919038 1 18.3781011 -4.796759793 6.078898678 1.023541523 1.196546191 0.251439279 0.119337131 0.231480149 23.45011171 0.032014106 0.070966051 1.60E-05 4.796759793 0.173004669 VASET(ph)HS(ph)EGSEYEELPK ddPTM_HeLa_A486_30min_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 2 0 VAS(0.573)ET(0.687)HS(0.624)EGS(0.113)EY(0.003)EELPK 63.857 0.0016288 0 117720 113190 72175 51374 112530 145440 140180 146640 100350 155160 TRUE FALSE FALSE 109468.4359 104220.4122 100123.0929 119601.2683 98415.4381 127497.0915 105105.4813 113253.2731 109048.4188 116306.9261 0.94120307 0.896080876 0.86085237 1.028324558 0.846170056 1.096212374 0.903690647 0.973744874 0.937591788 1 16.82757749 -5.248085653 24.98754601 0.965709204 0.899048985 0.186912716 0.066605894 1341.006558 2509292.263 0.01694285 0.029137656 5.65E-06 5.248085653 -0.066660219 VASETHS(ph)EGSEYEELPK ddPTM_HeLa_A485_30min_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 VASETHS(1)EGSEYEELPK 299.57 1.03E-68 243690000 124640 134910 112650 165280 220170 163490 229600 240540 176870 304930 TRUE FALSE FALSE 152365.738 150686.5509 154323.9228 174308.8279 198249.1017 172050.0836 180544.0843 181547.1878 212366.1867 228916.5628 0.66559508 0.658259713 0.674149222 0.761451359 0.866032144 0.751584252 0.788689478 0.793071439 0.927701273 1 17.80446232 -3.450478114 0.081282584 1.239252945 2.50E-13 0.816514744 0.046408478 48.72505231 0.498402666 1.754080439 7.469993286 0.000354423 3.450478114 -1.239252945 VASETHS(ph)EGSEYEELPK ddPTM_HeLa_A486_30min_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 VAS(0.036)ET(0.235)HS(0.715)EGS(0.013)EYEELPK 131.67 8.38E-06 336560000 121800 168210 85506 41953 166740 161410 175600 162770 125890 132430 TRUE FALSE FALSE 113262.449 154880.427 118616.2131 97668.70419 145825.9144 141496.8753 131663.0227 125710.8242 136802.2466 99268.66603 1.140968782 1.56021465 1.194900847 0.983882509 1.469002458 1.425393137 1.32633013 1.266369634 1.378100986 1 16.59905079 -10.26517053 5.052607175 0.999940395 1.307693611 0.246304237 0.16000806 0.000108325 1.58E-05 0.156201548 0.037877121 5.43E-11 10.26517053 0.307753216 VASGPSPGEGIS(ph)PQSAQAPQAPGDNHVVPVLR ddPTM_HeLa_A486_30min_R1 3 VASGPSPGEGISPQSAQAPQAPGDNHVVPVLR 32 0 Q14764 Q14764 MVP Major vault protein 1 0 VASGPS(0.001)PGEGIS(0.986)PQS(0.012)AQAPQAPGDNHVVPVLR;VASGPSPGEGIS(0.938)PQS(0.062)AQAPQAPGDNHVVPVLR;VASGPSPGEGIS(0.994)PQS(0.006)AQAPQAPGDNHVVPVLR ;; 204.25 2.70E-29 759590000 85844 106657 69717 31457.1 114157 87741 97413 107594 89405 101555 TRUE FALSE FALSE 79826.7789 98205.11088 96713.28949 73233.71855 99838.36459 76916.40751 73039.23707 83097.19496 97154.69739 76124.96699 1.048628092 1.290051277 1.270454272 0.962019709 1.311506179 1.010396596 0.959464942 1.091589241 1.276252736 1 16.21608208 -6.293187651 24.9978873 1.066510298 1.176139168 0.151762411 0.128823016 1365.273228 1074981.895 0.045633861 0.040248917 5.09E-07 6.293187651 0.109628869 VASPLS(ph)PTSLTHTSRPPAALTPVPLSQGDLSHPPR ddPTM_HeLa_A485_30min_R1 2 VASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPR 35 1 I3L0Y2;I3L4Q4;Q9BUL5-4;Q9BUL5;I3L2W6;I3L410;I3L1N0;Q9BUL5-3 I3L0Y2 PHF23 PHD finger protein 23 1 0 VAS(0.011)PLS(0.873)PT(0.045)S(0.045)LT(0.019)HT(0.006)S(0.001)RPPAALTPVPLSQGDLSHPPR;VASPLS(0.957)PT(0.019)S(0.019)LT(0.004)HT(0.001)S(0.001)RPPAALTPVPLSQGDLSHPPR ; 247.79 8.55E-52 781810000 168033 247220 325040 245050 289520 160019 291640 282370 203650 302570 TRUE FALSE FALSE 205411.3611 276130.2285 445285.822 258436.461 260694.3722 168397.3474 229328.7315 213118.3148 244520.687 227144.8674 0.904318744 1.215656914 1.960360483 1.137760514 1.147700915 0.741365409 1.009614411 0.938248428 1.076496642 1 17.79325318 -5.763270269 2.78080042 0.958089559 1.361290974 0.279990338 0.263914969 0.335389368 5.320261545 0.088205785 0.110558487 1.72E-06 5.763270269 0.403201415 VASPLS(ph)PTSLTHTSRPPAALTPVPLSQGDLSHPPR ddPTM_HeLa_A486_30min_R1 2 VASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPR 35 1 I3L0Y2;I3L4Q4;Q9BUL5-4;Q9BUL5;I3L2W6;I3L410;I3L1N0;Q9BUL5-3 I3L0Y2 PHF23 PHD finger protein 23 1 0 VAS(0.005)PLS(0.93)PT(0.028)S(0.028)LT(0.005)HT(0.002)S(0.002)RPPAALTPVPLSQGDLSHPPR;VAS(0.001)PLS(0.984)PT(0.005)S(0.005)LT(0.001)HT(0.002)S(0.002)RPPAALTPVPLSQGDLSHPPR ; 215.92 1.99E-39 559410000 252240 305040 378260 142988 434700 201647 239560 284300 268540 229123 TRUE FALSE FALSE 234559.2786 280867.5195 524732.4022 332883.2902 380175.8726 176769.8433 179619.5542 219571.0962 291817.2634 171749.1095 1.365708849 1.635336104 3.055226335 1.938195146 2.213553676 1.029232954 1.045825243 1.278440959 1.699090402 1 17.38994309 -6.259624876 24.99268449 1.217627165 2.069601015 0.457653085 0.451815508 159.6687083 2199261.721 0.160550948 0.15273497 5.50E-07 6.259624876 0.85197385 VASPMNKS(ph)PSAMQQQDGLDR ddPTM_HeLa_A485_30min_R1 1 VASPMNKSPSAMQQQDGLDR 20 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 VASPMNKS(0.857)PS(0.142)AMQQQDGLDR 146.75 9.22E-10 361570000 179650 233360 137610 160770 210610 232190 269410 306910 151160 256880 TRUE FALSE FALSE 219612.5227 260649.422 188517.6654 169552.458 189640.9289 244347.1094 211848.3526 231639.8413 181496.4255 192844.5435 1.138805997 1.351603822 0.97756287 0.879218333 0.98338758 1.267067789 1.098544707 1.201173946 0.941154062 1 17.5570788 -4.76714237 24.99975092 1.052632862 1.245204918 0.30256456 0.121859335 166.6053709 730347.0849 0.033822472 0.07366601 1.71E-05 4.76714237 0.192572056 VASPMNKS(ph)PSAMQQQDGLDR ddPTM_HeLa_A486_30min_R1 2 VASPMNKSPSAMQQQDGLDR 20 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 VAS(0.002)PMNKS(0.669)PS(0.329)AMQQQDGLDR;VASPMNKS(0.867)PS(0.133)AMQQQDGLDR ; 146.39 9.47E-10 624640000 494430 459170 235940 139037 425640 457110 553300 535380 362810 568080 TRUE FALSE FALSE 459773.0102 422783.6969 327302.2867 323685.1625 372252.2623 400716.4158 414858.4878 413485.6613 394258.6629 425829.0704 1.079712594 0.992848366 0.768623632 0.760129322 0.874182361 0.941026444 0.974237121 0.97101323 0.925861315 1 18.69991492 -6.417794631 4.086765637 0.96461453 0.886380435 0.122847676 0.090338487 0.551219958 15.97282137 0.0373834 0.032218278 3.82E-07 6.417794631 -0.078234095 VASPMNKSPS(ph)AMQQQDGLDR ddPTM_HeLa_A485_30min_R1 1 VASPMNKSPSAMQQQDGLDR 20 1 O60343-2;A0A3B3IRT3;O60343-3;O60343;Q5JU47 O60343-2 TBC1D4 TBC1 domain family member 4 1 0 VASPMNKS(0.382)PS(0.618)AMQQQDGLDR 134.63 1.38E-07 490930000 252860 265380 168520 238580 252650 287810 367150 355410 223490 361180 TRUE FALSE FALSE 309107.8346 296413.8825 230862.5607 251613.0213 227495.2789 302879.2866 288705.4032 268245.1402 268342.393 271144.473 1.140011564 1.09319537 0.851437457 0.927966624 0.839018684 1.117040238 1.064765953 0.989307056 0.989665731 1 18.04870224 -6.291496776 24.99886536 1.033525597 0.968193726 0.095670973 0.094887736 1919.780229 1596683.674 0.036515286 0.032207979 5.11E-07 6.291496776 -0.065331871 VASPSQGQVGSS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 VASPSQGQVGSSSPK 15 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPSQGQVGS(0.015)S(0.896)S(0.09)PK 93.494 0.00099357 69084000 121560 108240 51929 64701 100440 149120 149880 132970 110980 305490 TRUE FALSE FALSE 113039.2717 99662.6682 72037.29951 150627.1978 87841.87863 130723.0905 112378.4387 102695.6337 120599.8358 228993.3156 0.493635683 0.435220862 0.314582543 0.657779889 0.383600187 0.570859853 0.490749865 0.448465639 0.52665221 1 17.80494596 -14 0.330882977 6.310784491 0.458706524 0.755228327 0.089217795 166.7517503 1.44341698 622.8541272 0.072866715 1.00E-14 14 -5.852077966 VASPSQGQVGSS(ph)SPKR ddPTM_HeLa_A485_30min_R1 1 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPSQGQVGS(0.039)S(0.554)S(0.407)PKR 88.574 0.00066711 1151000000 207150 178200 135320 329340 223900 266180 364130 340160 194920 573860 TRUE FALSE FALSE 253229.8028 199038.9399 185380.4991 347331.0103 201607.7298 280116.7732 286330.6508 256735.2266 234038.6561 430807.2631 0.587803003 0.462013891 0.430309596 0.806232949 0.467976627 0.650213674 0.664637473 0.595939875 0.543256059 1 18.71668305 -14 0.249399971 3.521335919 0.542191264 0.584393795 0.106623012 129.398353 1.28487983 166.3639681 0.155355858 1.00E-14 14 -2.979144655 VASPSQGQVGSS(ph)SPKR ddPTM_HeLa_A486_30min_R1 1 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPS(0.002)QGQVGS(0.136)S(0.431)S(0.431)PKR 69.256 0.0054169 507520000 838190 685990 378090 388430 699960 896980 1063200 967340 653550 1148000 TRUE FALSE FALSE 779437.2094 631629.6541 524496.5736 904284.6702 612164.4899 786319.7274 797176.1146 747097.7989 710200.2402 860533.3278 0.90576063 0.733997898 0.609501755 1.050842124 0.711378014 0.913758598 0.926374481 0.86817997 0.825302423 1 19.71487154 -5.255313148 24.99855499 0.887799912 0.748177891 0.275776159 0.110006148 694.8377079 2835330.49 0.029214187 0.048955701 5.56E-06 5.255313148 -0.139622021 VASPSQGQVGSSS(ph)PK ddPTM_HeLa_A486_30min_R1 1 VASPSQGQVGSSSPK 15 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPSQGQVGS(0.004)S(0.03)S(0.967)PK 139.34 9.59E-06 0 45853 37276 17353 24198 35660 45212 56221 49531 33620 93111 TRUE FALSE FALSE 42638.94149 34322.114 24072.54633 56334.1669 31187.19028 39634.20312 42153.91115 38253.87255 36534.20867 69795.39955 0.610913352 0.491753242 0.344901619 0.807132952 0.446837334 0.567862687 0.603964035 0.548085874 0.523447232 1 16.09084433 -11.01472217 2.579834725 1.492950441 0.548389198 0.584498887 0.113962793 17931738.32 7981926.476 52373219.47 0.027065539 9.67E-12 11.01472217 -0.944561243 VASPSQGQVGSSS(ph)PKR ddPTM_HeLa_A485_30min_R1 1 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPSQGQVGSS(0.041)S(0.958)PKR 188.34 3.86E-18 909790000 365840 342630 214510 523780 369630 364640 578920 523430 338730 880150 TRUE FALSE FALSE 447219.8459 382697.598 293866.1755 552392.7751 332828.3394 383731.9866 455229.0127 395057.9718 406710.004 660744.803 0.676842018 0.579191234 0.444749886 0.836015316 0.503716923 0.580756723 0.68896344 0.597897963 0.615532657 1 19.33373365 -13.99999869 0.447592328 9.64814008 0.607030821 0.567485734 0.101142997 928.9742201 5.456625387 7956.911617 0.053266043 1.00E-14 13.99999869 -9.041109258 VASPSQGQVGSSS(ph)PKR ddPTM_HeLa_A486_30min_R1 3 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPSQGQVGS(0.002)S(0.04)S(0.959)PKR;VASPSQGQVGSS(0.008)S(0.991)PKR;VASPSQGQVGS(0.046)S(0.186)S(0.768)PKR ;; 172.52 1.56E-12 2391840000 1024510 865320 546620 482240 1007030 1150140 1358710 1269770 904600 1624820 TRUE FALSE FALSE 952697.1396 796748.8918 758285.903 1122679.091 880718.9072 1008247.421 1018746.387 980671.0899 983011.4563 1217954.496 0.782210783 0.654169671 0.622589682 0.921774249 0.723113146 0.827820271 0.836440434 0.805178759 0.807100314 1 20.2160288 -14 0.064641984 1.818552529 0.454778839 0.495378923 0.076488601 297.6924115 1.39371665 37.28882099 5.41728012 1.00E-14 14 -1.36377369 VASPT(ph)SGVK ddPTM_HeLa_A485_30min_R1 2 VASPTSGVK 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAS(0.263)PT(0.598)S(0.139)GVK;VAS(0.243)PT(0.735)S(0.021)GVK ; 96.171 0.012376 177440000 268680 234860 196593 365840 315990 279900 401550 384330 224840 474650 TRUE FALSE FALSE 328446.9391 262324.834 269320.9316 385824.9128 284528.9261 294555.1312 315755.5621 290072.4649 269963.3256 356328.4903 0.921753236 0.736188212 0.755822055 1.082778737 0.798501758 0.826639293 0.886136166 0.814059141 0.757624869 1 18.44284831 VASRSPART(ph)PPAS(ph)LYHGYLPENGVLRPEPTK ddPTM_HeLa_A485_30min_R1 1 VASRSPARTPPASLYHGYLPENGVLRPEPTK 31 3 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 VAS(0.114)RS(0.117)PART(0.81)PPAS(0.674)LY(0.286)HGYLPENGVLRPEPTK 100.72 7.80E-05 311670000 96004 123750 115040 75572 221260 124160 170420 151720 142890 159450 TRUE FALSE FALSE 117359.7586 138221.486 157598.0832 79700.307 199230.5775 130660.8256 134008.3748 114510.4321 171566.7123 119702.0495 0.980432324 1.154712778 1.31658634 0.66582241 1.664387355 1.091550447 1.119516127 0.956628835 1.433281327 1 16.86908833 -4.262227206 8.721380147 1.156995825 0.979524584 0.039617962 0.259033698 0.31489472 432.722187 0.060688658 0.339277334 5.47E-05 4.262227206 -0.17747124 VASRSPART(ph)PPASLY(ph)HGYLPENGVLRPEPTK ddPTM_HeLa_A485_30min_R1 1 VASRSPARTPPASLYHGYLPENGVLRPEPTK 31 3 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 VAS(0.366)RS(0.398)PART(0.58)PPAS(0.243)LY(0.411)HGY(0.002)LPENGVLRPEPTK 68.453 0.002275 223250000 39422 54759 55274 47674 102300 57253 89917 75935 75465 76211 TRUE FALSE FALSE 48191.2879 61162.58871 75722.15274 50278.3099 92114.6528 60250.67855 70705.4984 57311.82219 90610.13329 57213.00026 0.842313594 1.069033059 1.323513055 0.878791702 1.610030105 1.053094197 1.235829236 1.001727264 1.583733293 1 15.80405538 -4.394793337 3.00319287 1.208880179 0.82768882 0.192069601 0.231777725 0.472894433 6.896345707 0.055356827 0.359579305 4.03E-05 4.394793337 -0.381191359 VASRSPART(ph)PPASLY(ph)HGYLPENGVLRPEPTK ddPTM_HeLa_A486_30min_R1 1 VASRSPARTPPASLYHGYLPENGVLRPEPTK 31 3 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 VAS(0.132)RS(0.14)PART(0.743)PPAS(0.408)LY(0.576)HGYLPENGVLRPEPTK 75.515 0.0015168 145870000 171990 196720 183190 43070 298650 191610 245020 255340 176990 139250 TRUE FALSE FALSE 159934.3892 181131.1908 254126.074 100269.1366 261190.5322 167971.1063 183713.4044 197204.656 192331.6357 104380.8936 1.532219007 1.735290669 2.434603357 0.960608145 2.502282967 1.609213147 1.760029044 1.889279246 1.842594262 1 16.67149813 -10.08894889 5.319999864 0.999988411 1.814401944 0.253722347 0.415227651 5.27E-05 9.02E-06 0.371137053 0.090012677 8.15E-11 10.08894889 0.814413533 VASS(ph)PAPPEGPSHPR ddPTM_HeLa_A486_30min_R1 1 VASSPAPPEGPSHPR 15 0 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.446)S(0.554)PAPPEGPSHPR 110.37 0.00017003 502610000 213860 297970 221170 57801 279610 240260 251650 269500 234040 238690 TRUE FALSE FALSE 198869.5184 274357.772 306812.9471 134563.6491 244538.7065 210619.164 188684.5083 208140.7331 254326.7756 178920.4704 1.111496733 1.533406275 1.714800696 0.752086381 1.36674527 1.177166389 1.054571944 1.163314252 1.421451526 1 17.44895893 -5.244223077 24.9324286 1.148658515 1.461251693 0.297217466 0.22428743 1025.632491 1485305.935 0.059585857 0.102881517 5.70E-06 5.244223077 0.312593178 VASS(ph)PAPPEGPSHPREPSTPHR ddPTM_HeLa_A485_30min_R1 1 VASSPAPPEGPSHPREPSTPHR 22 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.277)S(0.723)PAPPEGPSHPREPSTPHR 64.27 0.0080259 651370000 62614 133630 109670 43939 134660 124890 141270 194610 101320 70679 TRUE FALSE FALSE 76542.26828 149256.8661 150241.4967 46339.27631 121252.7776 131429.0473 111086.5104 146881.5924 121653.9946 53060.02605 1.442559945 2.812981395 2.831538315 0.873336856 2.285200114 2.47698799 2.093600752 2.76821561 2.292761683 1 15.69533776 VASS(ph)PVMVSNPATR ddPTM_HeLa_A485_30min_R1 3 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 VAS(0.029)S(0.971)PVMVSNPATR;VAS(0.114)S(0.886)PVMVSNPATR;VAS(0.006)S(0.994)PVMVSNPATR ;; 208.75 3.79E-22 1739080000 588624 698734 711904 591028 915380 780319 809470 906610 744611 814260 TRUE FALSE FALSE 719561.3781 780444.8631 975266.9144 623314.3631 824241.5531 821175.2962 636520.1217 684262.476 894047.5977 611279.9673 1.177138818 1.276738818 1.595450475 1.019687208 1.348386332 1.343370207 1.041290662 1.119392934 1.462582852 1 19.22147376 -6.737702819 24.9967059 1.165765918 1.296480846 0.123761637 0.178534549 535.1924472 563604.7957 0.067396969 0.052175716 1.83E-07 6.737702819 0.130714929 VASS(ph)PVMVSNPATR ddPTM_HeLa_A486_30min_R1 5 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 VAS(0.021)S(0.979)PVMVSNPATR;VAS(0.093)S(0.907)PVMVSNPATR;VAS(0.007)S(0.993)PVMVSNPATR;VAS(0.033)S(0.967)PVMVSNPATR;VAS(0.029)S(0.971)PVMVS(0.001)NPATR ;;;; 236.05 3.69E-35 2727140000 1804269 1894205 1500333 644048 2137290 1731964 1910190 1983730 1477819 1933320 TRUE FALSE FALSE 1677799.06 1744101.297 2081302.118 1499376.292 1869211.159 1518291.891 1432240.258 1532077.984 1605917.541 1449204.088 1.157738288 1.203489082 1.436169091 1.034620523 1.289819132 1.047672928 0.988294382 1.0571858 1.1081376 1 20.46682935 -6.277289231 22.83909845 1.040584456 1.224432602 0.460458484 0.099646254 244.6754118 352566.9139 0.03446397 0.030525608 5.28E-07 6.277289231 0.183848147 VASSSSGNNFLSGS(ph)PASPMGDILQTPQFQMR ddPTM_HeLa_A485_30min_R1 1 VASSSSGNNFLSGSPASPMGDILQTPQFQMR 31 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1;F5H763 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VASSSSGNNFLS(0.026)GS(0.968)PAS(0.006)PMGDILQTPQFQMR 103.34 0.00010651 100170000 14094 22270 22442 20306 22917 26692 24581 28836 19959 15835 TRUE FALSE FALSE 17229.16168 24874.28278 30744.22969 21415.26536 20635.30301 28089.55185 19329.06854 21763.92579 23964.58823 11887.62592 1.449335787 2.092451675 2.586237983 1.801475375 1.735864095 2.362923601 1.625982233 1.830805068 2.015927182 1 13.537173 -11.00782234 0.375284085 1.33E-15 1.999325368 0.432350423 0.323220073 40.36925252 2.333769085 35.16292322 0.231681937 9.82E-12 11.00782234 1.999325368 VASSSSGNNFLSGSPAS(ph)PMGDILQTPQFQMR ddPTM_HeLa_A485_30min_R1 2 VASSSSGNNFLSGSPASPMGDILQTPQFQMR 31 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1;F5H763 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VASSSSGNNFLSGS(0.003)PAS(0.997)PMGDILQTPQFQMR;VASSSSGNNFLSGSPAS(1)PMGDILQTPQFQMR ; 125.59 2.41E-06 129336000 33052 45711 38601 32556 52983 37377 47987 55510 36777 44798 TRUE FALSE FALSE 40404.30337 51056.50382 52881.11622 34334.45184 47707.82649 39334.00192 37734.18543 41896.08546 44157.80656 33630.68305 1.201411917 1.518152449 1.572406845 1.02092639 1.418580361 1.169586769 1.122016623 1.245769686 1.313021401 1 15.03749046 -5.254474396 24.9960637 1.201069046 1.439406601 0.360228424 0.14916256 611.5219296 2194637.141 0.039558065 0.066671962 5.57E-06 5.254474396 0.238337555 VASSSSGNNFLSGSPAS(ph)PMGDILQTPQFQMR ddPTM_HeLa_A486_30min_R1 1 VASSSSGNNFLSGSPASPMGDILQTPQFQMR 31 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1;F5H763 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VASSSSGNNFLSGSPAS(1)PMGDILQTPQFQMR 169.94 1.12E-14 39855000 18626 22081 16567 9301.5 24007 19333 23955 23806 16484 21506 TRUE FALSE FALSE 17320.41358 20331.22114 22982.18608 21654.36207 20995.8182 16947.89102 17961.20563 18385.89348 17912.84639 16120.75762 1.074416848 1.261182732 1.425626923 1.343259578 1.3024089 1.051308594 1.114166347 1.140510509 1.111166535 1 13.97663193 -6.255664059 24.67184361 1.094133299 1.291708575 0.540341313 0.090769482 337.5839405 1442140.596 0.032116902 0.03128969 5.55E-07 6.255664059 0.197575277 VATLNS(ph)EEESDPPTYK ddPTM_HeLa_A485_30min_R1 5 VATLNSEEESDPPTYK 16 0 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JQ82;C9JHS7;C9JT62;C9JHN6;C9JEJ8;C9JBS3;C9JMQ6 Q00341 HDLBP Vigilin 1 0 VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK ;;;; 394.01 7.31E-135 3045440000 3851330 3250280 2850140 5008000 4416760 3462430 4802940 4022680 3440640 6288750 TRUE FALSE FALSE 4708045.072 3630371.972 3904525.39 5281574.359 3977011.866 3643717.481 3776752.633 3036111.423 4131144.889 4721080.361 0.997238918 0.768970595 0.827040654 1.118721554 0.842394444 0.771797386 0.799976349 0.643096747 0.875042273 1 22.17068561 -5.99146291 24.99285075 0.795944597 0.91831514 0.1419506 0.122017776 341.6892495 1000308.502 0.037675059 0.042653851 1.02E-06 5.99146291 0.122370542 VATLNS(ph)EEESDPPTYK ddPTM_HeLa_A486_30min_R1 6 VATLNSEEESDPPTYK 16 0 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JQ82;C9JHS7;C9JT62;C9JHN6;C9JEJ8;C9JBS3;C9JMQ6 Q00341 HDLBP Vigilin 1 0 VATLNS(1)EEESDPPTYK;VATLNS(0.998)EEES(0.002)DPPTYK;VATLNS(1)EEESDPPTYK;VAT(0.002)LNS(0.99)EEES(0.008)DPPTYK;VATLNS(1)EEESDPPTYK;VATLNS(1)EEESDPPTYK ;;;;; 382.25 2.06E-134 3806940000 4260540 4894270 2965670 1712862 4449230 5293390 5727180 5268740 4103440 5537400 TRUE FALSE FALSE 3961898.147 4506430.221 4114056.847 3987629.299 3891166.086 4640345.361 4294178.988 4069162.918 4459129.483 4150798.998 0.954490485 1.085677775 0.991148174 0.960689569 0.937449895 1.117940272 1.034542745 0.980332442 1.074282201 1 21.98495764 -6.241799917 24.99808143 1.039760525 0.990326852 0.222825352 0.051473008 1513.073764 1925918.007 0.017470066 0.017447417 5.73E-07 6.241799917 -0.049433673 VATLNS(ph)EEESDPPTYKDAFPPLPEK ddPTM_HeLa_A485_30min_R1 2 VATLNSEEESDPPTYKDAFPPLPEK 25 1 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JQ82;C9JHS7;C9JT62;C9JHN6;C9JEJ8;C9JBS3 Q00341 HDLBP Vigilin 1 0 VATLNS(0.995)EEES(0.005)DPPTYKDAFPPLPEK;VAT(0.438)LNS(0.549)EEES(0.012)DPPTYKDAFPPLPEK ; 221.72 1.98E-38 659710000 354832 431382 250936 346736 597337 647855 940360 1245980 384223 550887 TRUE FALSE FALSE 433763.1542 481828.3724 343767.6687 365677.3097 537864.0309 681775.686 739444.404 940401.4514 461333.0318 413561.0092 1.04884925 1.165072049 0.831238103 0.884216117 1.300567556 1.648549237 1.787993518 2.273912265 1.115513846 1 18.65774065 -6.049786966 2.996913742 1.658330401 0.986867267 0.370393628 0.34639159 0.244553718 4.373419591 0.117033763 0.123147391 8.92E-07 6.049786966 -0.671463134 VATLNS(ph)EEESDPPTYKDAFPPLPEK ddPTM_HeLa_A486_30min_R1 2 VATLNSEEESDPPTYKDAFPPLPEK 25 1 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JQ82;C9JHS7;C9JT62;C9JHN6;C9JEJ8;C9JBS3 Q00341 HDLBP Vigilin 1 0 VAT(0.007)LNS(0.94)EEES(0.053)DPPTYKDAFPPLPEK;VAT(0.04)LNS(0.868)EEES(0.092)DPPTYKDAFPPLPEK ; 121.26 2.57E-05 495120000 278945 223415 122094 148500 317040 253424 410460 432760 163408 396280 TRUE FALSE FALSE 259392.396 205710.7817 169372.0666 345715.5048 277273.8869 222159.1235 307758.5666 334229.9951 177572.337 297048.9087 0.873231271 0.692514854 0.570182423 1.163833614 0.933428398 0.747887358 1.036053517 1.125168231 0.597788215 1 18.18034096 -5.24902511 24.94085678 0.943958986 0.710030061 0.274273264 0.172537432 997.8422669 2004708.742 0.046353308 0.079580639 5.64E-06 5.24902511 -0.233928924 VAVAT(ph)PAK ddPTM_HeLa_A485_30min_R1 4 VAVATPAK 8 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VAVAT(1)PAK;VAVAT(1)PAK;VAVAT(1)PAK;VAVAT(1)PAK ;;; 136.96 0.00049789 1346030000 4092300 3405260 2807030 5236910 4903710 3946460 5374690 5353520 3340380 6601700 TRUE FALSE FALSE 5002618.017 3803475.535 3845467.207 5522989.133 4415479.414 4153090.543 4226343.574 4040560.826 4010763.626 4956017.685 1.009402777 0.767445917 0.775918782 1.11440061 0.890932941 0.837989452 0.852770075 0.815283779 0.809271452 1 22.2407499 -6.128213933 6.163838397 0.851366736 0.908419263 0.044380958 0.107472525 0.814334869 37.43941332 0.036470351 0.03656703 7.44E-07 6.128213933 0.057052527 VAVAT(ph)PAK ddPTM_HeLa_A486_30min_R1 6 VAVATPAK 8 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VAVAT(1)PAK;VAVAT(1)PAK;VAVAT(1)PAK;VAVAT(1)PAK;VAVAT(1)PAK;VAVAT(1)PAK ;;;;; 128.81 0.00049789 1847030000 4225250 4770180 2784010 2017770 4398570 5116220 5878980 5393970 3638730 5604430 TRUE FALSE FALSE 3929081.794 4392173.564 3862053.23 4697470.532 3846860.336 4485032.794 4407997.022 4165880.781 3954138.046 4201044.249 0.93526313 1.045495668 0.919307915 1.118167354 0.915691458 1.067599513 1.049262222 0.991629827 0.941227421 1 22.00231655 -4.238029883 22.8494324 1.006462573 0.935262868 0.09954499 0.063185289 4583.541073 4473656.069 0.014716603 0.700839813 5.78E-05 4.238029883 -0.071199705 VAVAT(ph)PAKK ddPTM_HeLa_A485_30min_R1 4 VAVATPAKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VAVAT(1)PAKK;VAVAT(1)PAKK;VAVAT(1)PAKK;VAVAT(1)PAKK ;;; 97.911 0.0019653 31727800000 20859310 15088230 9628630 26669630 23632860 20708670 30267840 31518960 14773310 33786770 TRUE FALSE FALSE 25499391.55 16852667.25 13190660.92 28126524.36 21279889.48 21792943.94 23800868.72 23788885.64 17738177.81 25364350.04 1.005324067 0.664423383 0.520047267 1.108899866 0.838968452 0.859195836 0.938359102 0.937886664 0.699335003 1 24.59629886 -5.261349765 25 0.905097695 0.723380767 0.234068417 0.150284432 12.01981595 3352716.199 0.041191271 0.065900131 5.48E-06 5.261349765 -0.181716929 VAVAT(ph)PAKK ddPTM_HeLa_A486_30min_R1 6 VAVATPAKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VAVAT(1)PAKK;VAVAT(1)PAKK;VAVAT(1)PAKK;VAVAT(1)PAKK;VAVAT(1)PAKK;VAVAT(1)PAKK ;;;;; 108.35 0.00088271 31447150000 33669690 32978820 14937200 18262640 30061780 39720050 49231070 46036440 23338590 46426530 TRUE FALSE FALSE 31309618.6 30365458.2 20721283.87 42516348.86 26291151.24 34819794.07 36912935.57 35554947.58 25361597.77 34801024.7 0.899675193 0.872544945 0.595421659 1.221698189 0.755470606 1.000539334 1.060685307 1.021663813 0.728760087 1 25.05262645 -5.250250528 24.99339259 0.966867135 0.797547068 0.223359228 0.154035068 1185.627375 2648421.397 0.040650004 0.069549905 5.62E-06 5.250250528 -0.169320067 VAVATPAK(ac)K ddPTM_HeLa_A485_30min_R1 2 VAVATPAKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; VAVATPAK(1)K;VAVATPAK(1)K 171.73 3.82E-06 148786000 232151 259200 275950 271710 377590 448350 704680 913630 660980 1079970 FALSE TRUE FALSE 283792.189 289511.1853 378035.3882 286552.8293 339995.8138 471824.9127 554119.3613 689560.81 793632.6231 810753.3544 0.350035171 0.3570891 0.466276687 0.353440202 0.419357887 0.581958632 0.683462311 0.850518603 0.978882935 1 19.62890356 -6.981382973 0.929723265 1.013083227 0.374019249 0.977850427 0.036643826 0.078204298 0.125854801 0.031279497 0.015226882 1.04E-07 6.981382973 -0.639063978 down VAVATPAK(ac)K ddPTM_HeLa_A486_30min_R1 2 VAVATPAKK 9 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 0 1 ; VAVATPAK(1)K;VAVATPAK(1)K 182.73 8.21E-08 239230000 787700 899340 651080 320490 1011900 904160 1062870 1033750 806640 1134530 FALSE TRUE FALSE 732486.2977 828073.0231 903195.6125 746116.9167 884978.0664 792613.932 796928.6841 798387.6916 876560.2047 850436.3034 0.861306478 0.973703756 1.062037931 0.877334274 1.04061652 0.932008581 0.937082155 0.938797754 1.030718234 1 19.69784366 VAVFFGGLSIK ddPTM_HeLa_A485_30min_R1 2 VAVFFGGLSIK 11 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;A0A140T9X9;A0A140TA18;F6UJC5;F6R6M7;A0A140T996;A0A0G2JJL7;F6QYI9;A0A140T9K1;A0A140T973;A0A140T9L4;A0A140T9N3;A0A140T9K2 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 ; ; 199.89 9.54E-14 57874000 77842 64192 63174 96985 107506 68541 90752 81361 51720 128681 FALSE FALSE TRUE 95157.68435 71698.696 86544.69149 102283.045 96802.32516 72129.70078 71362.09382 61407.08718 62099.7296 96603.1949 0.985036618 0.742197979 0.89587815 1.058795675 1.002061322 0.746659578 0.738713599 0.635663109 0.642833083 1 16.55978328 -6.331555964 6.710873328 0.7276894 0.930238972 0.349626457 0.123055335 0.274648204 22.0309012 0.044347309 0.039102156 4.66E-07 6.331555964 0.202549572 VAVFFGGLSIK ddPTM_HeLa_A486_30min_R1 2 VAVFFGGLSIK 11 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;A0A140T9X9;A0A140TA18;F6UJC5;F6R6M7;A0A140T996;A0A0G2JJL7;F6QYI9;A0A140T9K1;A0A140T973;A0A140T9L4;A0A140T9N3;A0A140T9K2 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 ; ; 222.42 3.90E-20 63426000 177780 169114 122041 85207 180570 183256 223240 188820 148384 216530 FALSE FALSE TRUE 165318.5401 155712.7907 169298.5436 198366.2021 157921.2269 160647.7379 167382.9908 145829.8079 161246.0446 162309.4786 1.018539037 0.959357347 1.043060116 1.222147984 0.972963675 0.9897619 1.031258262 0.898467601 0.993448109 1 17.30838773 VAVFFGGLSIKK ddPTM_HeLa_A485_30min_R1 1 VAVFFGGLSIKK 12 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;F6TRA5;A0A0A0MT12;F6S4E6;A0A140T9X9;A0A140TA18;F6UJC5;F6R6M7;A0A140T996;A0A0G2JJL7;F6QYI9;A0A140T9K1;A0A140T973;A0A140T9L4;A0A140T9N3;A0A140T9K2 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 114.72 0.00051979 0 25542 30898 17966 25368 30817 30211 36515 41009 15250 32923 FALSE FALSE TRUE 31223.72978 34511.25232 24612.37103 26753.7896 27748.75127 31792.80124 28713.27195 30951.47845 18310.53512 24715.902 1.263305291 1.396317736 0.995811159 1.082452488 1.12270842 1.286329799 1.161732716 1.252290062 0.740840254 1 14.59315194 -1 0.107784592 0.888433175 2.053621692 0.236372586 0.155772798 188.7882786 1.428410597 1.585073558 32.6675664 0.1 1 1.165188517 VAVLGASGGIGQPLSLLLK ddPTM_HeLa_A485_30min_R1 2 VAVLGASGGIGQPLSLLLK 19 0 P40926;P40926-2 P40926 MDH2 "Malate dehydrogenase, mitochondrial" 0 0 ; ; 349.57 1.59E-121 25813000 48760 39774 34143 53858 53283 58297 69012 71005 33567 79981 FALSE FALSE TRUE 59606.49378 44425.22331 46773.91651 56800.12616 47977.95743 61349.34078 54267.02242 53590.91242 40303.58901 60043.20864 0.992726657 0.739887563 0.77900428 0.945987522 0.799057188 1.021753203 0.903799508 0.892539117 0.671243092 1 15.87371345 -4.190211798 21.42545928 0.862561134 0.992735913 0.117421057 0.107915106 61733.92663 18563875.33 0.026484176 122.2965255 6.45E-05 4.190211798 0.130174779 VAVLGASGGIGQPLSLLLK ddPTM_HeLa_A486_30min_R1 2 VAVLGASGGIGQPLSLLLK 19 0 P40926;P40926-2 P40926 MDH2 "Malate dehydrogenase, mitochondrial" 0 0 ; ; 355.74 6.36E-122 27361000 39914 65910 46468 24280 71027 64787 76745 70474 69962 73044 FALSE FALSE TRUE 37116.23472 60687.05156 64461.65406 56525.06704 62118.13136 56794.23865 57542.58927 54428.60864 76026.36249 54753.30696 0.67788115 1.108372351 1.177310698 1.03235896 1.134509216 1.03727504 1.050942719 0.994069795 1.388525492 1 15.74065848 -4.260731738 24.65339161 1.099892484 0.677881002 0.569586222 0.110737335 34.21692696 1191784.74 0.026041985 0.151495526 5.49E-05 4.260731738 -0.422011482 VAVNDAHLLQYNHR ddPTM_HeLa_A485_30min_R1 3 VAVNDAHLLQYNHR 14 0 P17931 P17931 LGALS3 Galectin-3 0 0 ;; ;; 264.29 1.26E-41 124576000 96415 109134 109211 88839 128846 120235 144321 149280 94169.1 125348 FALSE FALSE TRUE 117862.1841 121896.272 149612.6935 93692.04962 116017.6398 126530.3187 113485.6394 112668.8459 113067.9746 94101.05046 1.252506572 1.295376315 1.589915233 0.9956536 1.232904832 1.344621745 1.205997582 1.197317622 1.201559112 1 16.52192321 -13.99999792 0.106904539 0.128209085 1.422501299 0.285853051 0.135663013 229.7127692 1.641983074 43.57145016 1.889861453 1.00E-14 13.99999792 1.294292213 VAVNDAHLLQYNHR ddPTM_HeLa_A486_30min_R1 1 VAVNDAHLLQYNHR 14 0 P17931 P17931 LGALS3 Galectin-3 0 0 119.32 8.03E-05 6252300 21423 18273 14564 3924.1 22863 18910 25523 23296 20123 23792 FALSE FALSE TRUE 19921.35833 16824.98093 20203.57084 9135.503113 19995.30935 16577.07646 19136.87545 17992.00935 21867.27784 17834.32834 1.11702319 0.943404238 1.132847307 0.512242622 1.121169745 0.929503828 1.07303595 1.008841432 1.226134084 1 14.12236926 -6.897908727 1.611849748 1.093977508 0.949861909 0.088756494 0.178138462 0.955674061 4.960552435 0.107799103 0.057775388 1.27E-07 6.897908727 -0.144115599 VAVPTGPTPLDS(ph)TPPGGAPHPLTGQEEAR ddPTM_HeLa_A485_30min_R1 2 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 VAVPTGPTPLDS(0.596)T(0.404)PPGGAPHPLTGQEEAR;VAVPT(0.001)GPT(0.001)PLDS(0.499)T(0.499)PPGGAPHPLTGQEEAR ; 129.46 3.04E-06 483460000 41419 52151 52249 48036 64898 54417 60243 59716 49479 58962 TRUE FALSE FALSE 50632.51366 58249.6058 71578.07936 50660.08505 58436.52725 57266.18998 47371.59091 45070.55737 59408.98145 44263.85852 1.143879349 1.31596313 1.617077267 1.144502236 1.320186021 1.293746002 1.070209252 1.018224775 1.342155507 1 15.4338416 -6.7160384 6.724491956 1.109254081 1.314861543 0.293686345 0.150313163 0.256160338 28.16158947 0.058457466 0.044527703 1.92E-07 6.7160384 0.205607461 VAVPTGPTPLDS(ph)TPPGGAPHPLTGQEEAR ddPTM_HeLa_A486_30min_R1 1 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 VAVPTGPTPLDS(0.534)T(0.466)PPGGAPHPLTGQEEAR 143.23 2.82E-09 318310000 44577 70112 50764 15110 58545 54494 49546 56919 47953 52736 TRUE FALSE FALSE 41452.3825 64556.06978 70421.18031 35176.84362 51201.74019 47771.08433 37149.06676 43959.78623 52109.60465 39530.56235 1.048616059 1.633067327 1.78143634 0.889864488 1.295244417 1.208459518 0.939755585 1.112045557 1.318210558 1 15.27068086 -5.266036109 24.99997504 1.118593564 1.502242649 0.385243727 0.218718333 393.4347901 2139753.512 0.061020983 0.094024528 5.42E-06 5.266036109 0.383649085 VAVPTGPTPLDST(ph)PPGGAPHPLTGQEEAR ddPTM_HeLa_A485_30min_R1 2 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 VAVPTGPTPLDS(0.032)T(0.968)PPGGAPHPLTGQEEAR;VAVPTGPTPLDS(0.296)T(0.704)PPGGAPHPLTGQEEAR ; 153.69 1.83E-09 405450000 78988 80368 88252 77062 123282 92416 98107 110278 89618 136698 TRUE FALSE FALSE 96558.60809 89766.33849 120900.0873 81271.70193 111007.6112 97254.75886 77145.63799 83232.14759 107603.5106 102621.7043 0.940917993 0.874730536 1.178114202 0.791954319 1.081716698 0.947701653 0.751747776 0.811057935 1.048545347 1 16.64697637 -6.538975415 24.98270613 0.881754319 0.973825955 0.054821957 0.126907524 570.118402 884840.0002 0.046890094 0.036331197 2.89E-07 6.538975415 0.092071636 VAVPTGPTPLDST(ph)PPGGAPHPLTGQEEAR ddPTM_HeLa_A486_30min_R1 1 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 VAVPTGPTPLDS(0.198)T(0.802)PPGGAPHPLTGQEEAR 125.42 7.06E-06 99587000 25351 31041 31922 11366 40024 23140 28418 34951 30853 34246 TRUE FALSE FALSE 23574.02581 28581.19811 44283.0533 26460.62241 35003.81671 20285.22207 21307.51583 26993.42027 33527.36288 25670.5787 0.91832857 1.113383475 1.725050838 1.030776233 1.363577235 0.790212886 0.830036443 1.051531428 1.306061826 1 14.6478282 -6.250754771 24.90745079 0.98844347 1.240142196 0.190119477 0.241499846 1179.811105 2750321.359 0.082656325 0.081839269 5.61E-07 6.250754771 0.251698725 VAVS(ph)KLLGT(ph)VMAT(ph)ALMPK ddPTM_HeLa_A485_30min_R1 1 VAVSKLLGTVMATALMPK 18 1 Q9P2D3;Q9P2D3-2;Q9P2D3-3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 3 0 VAVS(1)KLLGT(1)VMAT(1)ALMPK 43.024 0.033417 274930000 251740 214040 255700 356980 692640 258540 554080 514630 333310 667960 TRUE FALSE FALSE 307738.6945 239070.1161 350294.0706 376480.9135 623678.3296 272076.7546 435696.2816 388416.1856 400202.2597 501449.8649 0.613697831 0.476757764 0.698562499 0.750784754 1.24375012 0.542580173 0.868873066 0.77458628 0.798090273 1 18.93574594 -5.110219636 2.613499516 0.850063952 0.550005241 0.339671114 0.173350215 0.323908781 4.292361205 0.048766728 0.101575345 7.76E-06 5.110219636 -0.300058712 VAVS(ph)KLLGT(ph)VMAT(ph)ALMPK ddPTM_HeLa_A486_30min_R1 1 VAVSKLLGTVMATALMPK 18 1 Q9P2D3;Q9P2D3-2;Q9P2D3-3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 3 0 VAVS(1)KLLGT(1)VMAT(1)ALMPK 43.024 0.033417 411010000 300680 511790 380150 53088 843520 578090 958280 918870 445150 425720 TRUE FALSE FALSE 279603.8847 471233.8965 527354.2608 123591.5469 737717.8561 506771.1334 718508.2083 709663.3598 483735.9604 319116.941 0.87618001 1.476680915 1.652542354 0.38729234 2.311747705 1.588042088 2.251551441 2.223834803 1.515857976 1 18.28372567 -5.779988574 24.99881597 1.886826441 1.164807471 0.324835734 0.496336195 275.5189701 371316.3103 0.148251539 0.168395451 1.66E-06 5.779988574 -0.722018969 VAYHPYPEDYGDIEIGS(ph)HR ddPTM_HeLa_A485_30min_R1 3 VAYHPYPEDYGDIEIGSHR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAYHPYPEDYGDIEIGS(1)HR;VAYHPYPEDYGDIEIGS(1)HR;VAYHPYPEDYGDIEIGS(1)HR ;; 204.18 8.68E-26 431250000 251680 321193 262293 205804 237515 227887 287183 268358 191279 227609 TRUE FALSE FALSE 307665.3477 358753.7273 359326.0956 217046.5514 213867.1726 239818.8109 225824.006 202542.7797 229666.9408 170870.2651 1.800578629 2.099567921 2.102917645 1.27024179 1.251634815 1.40351401 1.321610906 1.185360013 1.344101272 1 17.38254184 -5.265774255 24.9732463 1.270479482 2.010876071 0.875088246 0.129249901 109.2929784 629638.181 0.034866332 0.053804748 5.42E-06 5.265774255 0.740396589 VAYHPYPEDYGDIEIGS(ph)HR ddPTM_HeLa_A486_30min_R1 3 VAYHPYPEDYGDIEIGSHR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAYHPYPEDYGDIEIGS(1)HR;VAYHPYPEDYGDIEIGS(1)HR;VAYHPYPEDYGDIEIGS(1)HR ;; 193.77 6.46E-19 338840000 175510 206009 165133 61120.4 198391 160060 178803 171167 155058 178200 TRUE FALSE FALSE 163207.6553 189684.0966 229076.92 142291.3801 173506.9509 140313.4246 134064.5982 132196.0106 168498.5523 133577.5601 1.221819407 1.420029655 1.714935651 1.06523416 1.298922893 1.050426617 1.003646107 0.989657324 1.261428582 1 17.02731814 -5.289253364 24.99045313 1.097941633 1.449038409 0.544015473 0.149609484 539.423832 484663.1419 0.04288699 0.063628286 5.14E-06 5.289253364 0.351096776 VAYVSFGPHAGK ddPTM_HeLa_A485_30min_R1 2 VAYVSFGPHAGK 12 0 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 0 ; ; 186.02 9.77E-10 234527000 303090 383610 364510 224460 556850 382240 483380 636350 375890 529240 FALSE FALSE TRUE 370511.3249 428469.8525 499357.4175 236721.6814 501408.0588 402253.4953 380101.9141 480284.1647 451327.6751 397310.2079 0.932549221 1.078426489 1.256845174 0.595810721 1.262006485 1.012441884 0.956688015 1.208839227 1.135957914 1 18.59990633 -7.25587453 24.77034017 1.129298926 1.018839799 0.058766728 0.182406095 1149.191389 5115321.376 0.085761143 0.047771163 5.55E-08 7.25587453 -0.110459127 VAYVSFGPHAGK ddPTM_HeLa_A486_30min_R1 2 VAYVSFGPHAGK 12 0 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 0 ; ; 172.92 4.41E-07 158420000 352510 393040 279000 32631 440170 329760 382110 394740 319700 271620 FALSE FALSE TRUE 327800.8694 361894.079 387036.2719 75966.61708 384959.7742 289077.564 286502.0365 304866.3191 347411.8534 203604.5841 1.609987667 1.777435811 1.900921208 0.373108579 1.89072253 1.419798897 1.407149244 1.497345065 1.706306639 1 17.63541052 VCAKPWAPDMTLPGIS(ph)PPPEK ddPTM_HeLa_A486_30min_R1 2 VCAKPWAPDMTLPGISPPPEK 21 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 0 VCAKPWAPDMTLPGIS(1)PPPEK;VCAKPWAPDMTLPGIS(1)PPPEK ; 130.25 5.66E-07 1057390000 950150 943510 487058 382819 949490 1015250 1191010 1154540 753070 1206860 TRUE FALSE FALSE 883549.3916 868742.8314 675659.9015 891221.9786 830396.1106 889998.7773 893006.7008 891676.4454 818346.7139 904654.4007 0.976670639 0.960303549 0.74687074 0.985151875 0.917915294 0.983799755 0.987124697 0.98565424 0.904595958 1 19.78700723 VCALLSCTSHK ddPTM_HeLa_A486_30min_R1 1 VCALLSCTSHK 11 0 P15121 P15121 AKR1B1 Aldose reductase 0 0 75.229 0.022838 2886200 13985 17977 13353 3850.2 17380 17997 19276 16986 16458 19187 FALSE FALSE TRUE 13004.72372 16552.43705 18523.63921 8963.460178 15200.03834 15776.71312 14452.94092 13118.6586 17884.59269 14382.45031 0.904207797 1.150877402 1.287933475 0.623222051 1.056846226 1.096941952 1.004901154 0.912129597 1.243501093 1 13.81202187 -9.45509634 14.28106451 1.000003466 1.028662768 0.002488939 0.181048443 0 0 0.172222848 0.041770176 3.51E-10 9.45509634 0.028659302 VCGEEGVRVY(ph)S(ph)QLT(ph)MQK ddPTM_HeLa_A485_30min_R1 1 VCGEEGVRVYSQLTMQK 17 1 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 3 0 VCGEEGVRVY(1)S(1)QLT(1)MQK 44.441 0.034243 454520000 92266 143770 122020 64641 152460 120730 117070 143970 121660 73582 TRUE FALSE FALSE 112790.2534 160582.6509 167160.2757 68172.17415 137280.5471 127051.2361 92057.03813 108661.1318 146076.0461 55239.36158 2.041845709 2.90703307 3.026108031 1.234123136 2.48519431 2.300012753 1.666511623 1.967096083 2.644419521 1 15.75340903 -10.52938429 0.202776997 4.63E-20 2.546934268 0.324249472 0.529883611 32.57614553 1.174386767 19.95025221 1.504133178 2.96E-11 10.52938429 2.546934268 VCIESEHS(ph)MDTLLATLK ddPTM_HeLa_A485_30min_R1 1 VCIESEHSMDTLLATLK 17 0 E5RGN3;E5RIM7;O00244 E5RGN3 ATOX1 Copper transport protein ATOX1 1 0 VCIES(0.093)EHS(0.886)MDT(0.021)LLATLK 85.937 0.00081612 17311000 27992 27890 26765 24674 41412 28671 36522 39623 24699 36496 TRUE FALSE FALSE 34218.72383 31151.49289 36666.48728 26021.87814 37288.87587 30172.16923 28718.77634 29905.39712 29655.86275 27398.21886 1.248939721 1.136989709 1.338279962 0.949765321 1.36099635 1.101245646 1.048198662 1.091508805 1.082401119 1 14.74179449 -6.835189304 0.410642074 1.001004893 1.23158919 0.271033214 0.111728277 1.621222326 0.652950112 0.118549017 0.12808433 1.46E-07 6.835189304 0.230584297 VCIESEHS(ph)MDTLLATLKK ddPTM_HeLa_A486_30min_R1 1 VCIESEHSMDTLLATLKK 18 1 E5RGN3;E5RIM7;O00244 E5RGN3 ATOX1 Copper transport protein ATOX1 1 0 VCIESEHS(1)MDTLLATLKK 122.19 1.62E-05 38764000 86220 86730 54561 14369 103740 83633 98123 103490 70223 90079 TRUE FALSE FALSE 80176.42324 79857.19893 75688.48039 33451.75817 90727.96186 73315.21078 73571.58756 79927.58617 76309.98618 67522.63208 1.187400739 1.182673075 1.120934982 0.495415495 1.343667435 1.085787217 1.089584119 1.1837155 1.130139389 1 16.04308352 VCMYFTYK ddPTM_HeLa_A485_30min_R1 1 VCMYFTYK 8 0 E5RHG8;Q15369-2;Q15369 E5RHG8 TCEB1 Transcription elongation factor B polypeptide 1 0 0 102.77 0.017506 28206000 98056 80482 101560 151260 175950 78596 134960 122550 107010 226310 FALSE FALSE TRUE 119868.2189 89893.6698 139131.2703 159522.9508 158431.8002 82711.16503 106124.6935 92494.42035 128485.9254 169895.0819 0.705542606 0.529112843 0.818924649 0.938949786 0.932527289 0.486836724 0.624648414 0.544420823 0.756266303 1 17.37428456 -8.027228199 23.15886349 1.000000008 0.699205508 0.262528118 0.151604181 1689.736436 1437200.373 0.160725204 0.041499069 9.39E-09 8.027228199 -0.3007945 VCNPIITK ddPTM_HeLa_A485_30min_R1 2 VCNPIITK 8 0 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 132.08 0.0023188 48961000 36539 40113 41125 42265 60795 45567 58190 57358 40709 62896 FALSE FALSE TRUE 44666.97449 44803.86641 56338.84885 44573.82993 54742.03634 47952.81766 45757.23113 43290.86057 48878.92289 47217.18472 0.945989787 0.948888984 1.193185261 0.944017103 1.1593668 1.015579771 0.969080037 0.916845441 1.035193504 1 15.5270244 -6.616287861 5.204829357 0.974150624 1.041220143 0.090942383 0.08479324 0.471626114 20.76598947 0.032698671 0.025077964 2.42E-07 6.616287861 0.067069519 VCTFSPQRVS(ph)PTTSPR ddPTM_HeLa_A486_30min_R1 1 VCTFSPQRVSPTTSPR 16 1 A0A5E8;Q99501;Q99501-2;Q99501-4 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VCTFSPQRVS(0.76)PT(0.186)T(0.046)S(0.007)PR 114.55 3.69E-06 0 157570 96566 84575 96053 212530 110610 234170 252120 69794 186140 TRUE FALSE FALSE 146525.1567 88913.75847 117324.705 223616.2382 185872.5056 96964.0628 175578.1892 194717.7797 75843.80012 139529.3324 1.050138735 0.637240621 0.840860505 1.602646801 1.332139289 0.694936764 1.258360419 1.395532942 0.54356886 1 17.09020892 -5.044279077 24.97616448 1.138693577 0.817528872 0.135374493 0.314626937 747.0080467 421358.337 0.085133786 0.147467069 9.03E-06 5.044279077 -0.321164704 VCTIS(ph)PAPR ddPTM_HeLa_A486_30min_R1 1 VCTISPAPR 9 0 O43439-2;O43439-5;O43439;O43439-4 O43439-2 CBFA2T2 Protein CBFA2T2 1 0 VCT(0.182)IS(0.818)PAPR 79.16 0.0054205 0 123620 152530 121450 50233 158700 123260 150200 144200 128170 136200 TRUE FALSE FALSE 114954.8764 140442.9673 168478.6925 116944.9626 138794.3662 108053.4344 112618.3713 111368.8079 139279.8788 102094.6335 1.125963946 1.375615569 1.650220847 1.145456511 1.359467794 1.058365467 1.103078267 1.090839 1.36422331 1 16.63954751 -5.987501369 1.834060615 1.130791131 1.362365399 0.258970902 0.165203219 0.475454546 3.23696148 0.06217871 0.069107415 1.03E-06 5.987501369 0.231574267 VDALHCPPAAVVTVTPSPEGVFSSLQAKPS(ph)PSPR ddPTM_HeLa_A485_30min_R1 1 VDALHCPPAAVVTVTPSPEGVFSSLQAKPSPSPR 34 1 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 VDALHCPPAAVVTVTPS(0.002)PEGVFS(0.014)S(0.014)LQAKPS(0.485)PS(0.485)PR 129.61 1.63E-06 340230000 21994 22744 19241 22320 29009 22319 35961 36152 22630 34363 TRUE FALSE FALSE 26886.48942 25403.71295 26359.04658 23539.28508 26120.7621 23487.58833 28277.63858 27285.66532 27171.63343 25796.9365 1.042235748 0.984756967 1.0217898 0.912483739 1.01255287 0.910479751 1.096162661 1.05770952 1.053289154 1 14.65491213 -6.776640233 24.99998492 1.056599454 0.981112715 0.365629799 0.045686237 250.8014824 412475.6394 0.018371113 0.012439024 1.67E-07 6.776640233 -0.075486739 VDALHCPPAAVVTVTPSPEGVFSSLQAKPS(ph)PSPR ddPTM_HeLa_A486_30min_R1 2 VDALHCPPAAVVTVTPSPEGVFSSLQAKPSPSPR 34 1 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 VDALHCPPAAVVTVTPSPEGVFS(0.075)S(0.075)LQAKPS(0.452)PS(0.398)PR;VDALHCPPAAVVTVTPSPEGVFS(0.084)S(0.073)LQAKPS(0.482)PS(0.361)PR ; 183.27 4.11E-21 768220000 208300 247410 146552 97033 242780 240290 298670 299700 211970 272120 TRUE FALSE FALSE 193699.2457 227804.3305 203300.8592 225897.7278 212328.2686 210645.4629 223939.607 231464.8524 230343.7303 203979.3808 0.949602087 1.116800775 0.996673578 1.107453738 1.040930057 1.032680176 1.097854137 1.134746323 1.129250071 1 17.6380638 -6.780247218 13.82383687 1.10170211 1.045195245 0.139233682 0.05734076 2.518411883 1845.16754 0.022271874 0.01519892 1.66E-07 6.780247218 -0.056506865 VDDDS(ph)LGEFPVTNSR ddPTM_HeLa_A485_30min_R1 1 VDDDSLGEFPVTNSR 15 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 VDDDS(1)LGEFPVTNSR 148.7 6.24E-08 1065600000 612880 665520 620590 566840 858680 783940 962510 978790 632760 1018400 TRUE FALSE FALSE 749213.0416 743346.7747 850172.0659 597805.0339 773186.8042 824985.8862 756861.8755 738740.2178 759749.128 764531.6223 0.979963444 0.972290423 1.112016876 0.781923228 1.011320895 1.079073595 0.989968045 0.966265091 0.993744544 1 19.54421665 VDDDS(ph)LGEFPVTNSR ddPTM_HeLa_A486_30min_R1 3 VDDDSLGEFPVTNSR 15 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 VDDDS(1)LGEFPVTNSR;VDDDS(1)LGEFPVTNSR;VDDDS(1)LGEFPVTNSR ;; 319.43 3.38E-78 4354800000 1738900 1790790 1405110 758480 2302900 1879230 2319490 2310060 1698520 2450150 TRUE FALSE FALSE 1617012.09 1648881.278 1949206.222 1765779.771 2014048.808 1647389.709 1739129.069 1784109.766 1845749.081 1836616.492 0.880429908 0.897782028 1.061302798 0.961430859 1.096608256 0.896969899 0.946920098 0.971411165 1.004972507 1 20.80861897 -4.628087385 8.268523075 0.988897642 0.884909049 0.374809093 0.053415132 0.240083489 16.64719054 0.013593119 0.036204386 2.35E-05 4.628087385 -0.103988593 VDDKPS(ph)SPGDSSK ddPTM_HeLa_A485_30min_R1 1 VDDKPSSPGDSSK 13 1 C9JM54;C9J6K3;Q9HC52 C9JM54 CBX8 Chromobox protein homolog 8 1 0 VDDKPS(0.665)S(0.335)PGDSSK 163.41 3.98E-12 884040000 1070200 609030 390720 1898100 1003100 937680 1845900 1622300 727800 2648400 TRUE FALSE FALSE 1308262.298 680250.7606 535263.5872 2001788.397 903227.8419 986775.4749 1451508.385 1224428.381 873862.7842 1988202.62 0.658012561 0.342143579 0.269219838 1.006833195 0.454293658 0.496315348 0.730060594 0.61584688 0.439524008 1 20.92303336 -14 0.265651605 3.91771734 0.524956917 0.295982191 0.202014256 266.4743945 2.606235722 426.0896555 0.26135085 1.00E-14 14 -3.392760422 VDDKPS(ph)SPGDSSK ddPTM_HeLa_A486_30min_R1 1 VDDKPSSPGDSSK 13 1 C9JM54;C9J6K3;Q9HC52 C9JM54 CBX8 Chromobox protein homolog 8 1 0 VDDKPS(0.5)S(0.5)PGDSSK 180.62 2.21E-17 1659000000 2204000 1770600 649450 1692700 1314600 2544600 3828500 3224600 1523100 4521800 TRUE FALSE FALSE 2049510.981 1630291.208 900934.4329 3940691.144 1149710.61 2230673.124 2870568.806 2490428.973 1655123.534 3389511.848 0.604662581 0.480981121 0.265800644 1.162613179 0.339196516 0.658110437 0.84689741 0.734745617 0.488307346 1 21.69264608 -13.99999999 0.088849479 2.127332941 0.327982776 0.183646263 0.244386272 377.696832 2.332667264 82.42749761 5.960505105 1.00E-14 13.99999999 -1.799350165 VDDKPSS(ph)PGDSSK ddPTM_HeLa_A485_30min_R1 3 VDDKPSSPGDSSK 13 1 C9JM54;C9J6K3;Q9HC52 C9JM54 CBX8 Chromobox protein homolog 8 1 0 VDDKPS(0.02)S(0.98)PGDSSK;VDDKPS(0.334)S(0.666)PGDSSK;VDDKPS(0.046)S(0.952)PGDS(0.002)SK ;; 157.47 7.53E-09 3646800000 7050000 4426670 2331040 13687700 6308800 5932000 11989100 10729200 4375380 18696000 TRUE FALSE FALSE 8618248.178 4944330.55 3193388.699 14435424.39 5680673.72 6242590.347 9427530.843 8097846.877 5253478.633 14035431.27 0.614035152 0.352274929 0.227523375 1.028498812 0.404738095 0.444773675 0.671695131 0.576957467 0.37430119 1 23.74257006 -11.19667895 2.273494764 2.335107076 0.523260438 0.315132777 0.21154554 10036102.23 1957320.988 68970910.09 0.055668407 6.36E-12 11.19667895 -1.811846639 VDDKPSS(ph)PGDSSK ddPTM_HeLa_A486_30min_R1 2 VDDKPSSPGDSSK 13 1 C9JM54;C9J6K3;Q9HC52 C9JM54 CBX8 Chromobox protein homolog 8 1 0 VDDKPS(0.152)S(0.848)PGDSSK;VDDKPS(0.445)S(0.513)PGDS(0.034)S(0.009)K ; 173.37 1.34E-12 1315090000 3594630 3006430 1019433 2933650 2287870 4420980 6366030 5358080 2556090 7717490 TRUE FALSE FALSE 3342665 2768189.538 1414184.759 6829685.458 2000904.011 3875564.437 4773181.961 4138162.15 2777653.939 5784980.272 0.577817874 0.47851322 0.244458009 1.180589239 0.345879142 0.669935636 0.825099091 0.715328654 0.48014925 1 22.46388061 -14 0.081895747 2.133634375 0.279878729 0.18190531 0.249306788 430.9634521 2.485683454 89.72200649 7.915688222 1.00E-14 14 -1.853755646 VDDKPSS(ph)PGDSSKK ddPTM_HeLa_A486_30min_R1 2 VDDKPSSPGDSSKK 14 2 C9JM54;C9J6K3;Q9HC52 C9JM54 CBX8 Chromobox protein homolog 8 1 0 VDDKPS(0.203)S(0.797)PGDSSKK;VDDKPS(0.017)S(0.814)PGDS(0.139)S(0.03)KK ; 120.24 3.77E-05 426300000 1073900 785750 211110 981670 642490 1263930 1950590 1691880 623580 2386000 TRUE FALSE FALSE 998625.1556 723484.3083 292857.4457 2285377.371 561902.9132 1107999.167 1462531.751 1306675.857 677632.4165 1788530.07 0.55834966 0.40451336 0.163741975 1.277796448 0.314170236 0.619502678 0.817728354 0.730586463 0.378876726 1 20.77034294 -14 0.057969114 2.30324131 0.004706445 0.143033071 0.298260985 873.3466139 3.700113338 169.8967478 29.99599178 1.00E-14 14 -2.298534865 VDDS(ph)PSTSGGSSDGDQR ddPTM_HeLa_A486_30min_R1 1 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDS(0.977)PS(0.007)T(0.002)S(0.003)GGS(0.006)S(0.006)DGDQR 96.666 0.00027423 0 26771 38685 35955 9044.5 45911 29463 33525 32724 28415 35655 TRUE FALSE FALSE 24894.49115 35619.45971 49877.73891 21056.05308 40152.41428 25828.15462 25136.69041 25273.45956 30878.03508 26726.75592 0.93144455 1.332726643 1.86620999 0.787826743 1.502330264 0.966378213 0.940506602 0.945623915 1.155322972 1 14.70599711 -6.287224027 24.14726833 0.994351542 1.291576567 0.2008813 0.281384594 810.2081126 758754.8353 0.098031227 0.086490946 5.16E-07 6.287224027 0.297225025 VDDSPSTSGGS(ph)SDGDQR ddPTM_HeLa_A485_30min_R1 1 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDSPSTSGGS(0.619)S(0.381)DGDQR 277 1.91E-59 423690000 202460 189570 222860 287420 240380 179400 235880 162930 213120 323700 TRUE FALSE FALSE 247496.5285 211738.5625 305305.188 303121.0268 216446.9232 188793.1066 185482.311 122971.162 255891.2291 243007.5473 1.0184726 0.871325047 1.25636093 1.247372891 0.890700415 0.776902235 0.763277985 0.506038448 1.05301762 1 17.8906416 -5.952988146 6.033741078 0.790078168 1.092887295 0.361686633 0.17327476 0.199408331 17.07610521 0.05522896 0.062356493 1.11E-06 5.952988146 0.302809127 VDDSPSTSGGSS(ph)DGDQR ddPTM_HeLa_A485_30min_R1 3 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDSPSTSGGS(0.243)S(0.757)DGDQR;VDDSPSTSGGS(0.041)S(0.959)DGDQR;VDDSPS(0.003)T(0.011)S(0.011)GGS(0.134)S(0.841)DGDQR ;; 288.25 6.91E-70 0 261735 226290 235495 307090 301670 221162 269520 241526 265223 375587 TRUE FALSE FALSE 319957.0478 252752.647 322614.4003 323865.5491 271634.6756 232741.7003 211934.8502 182291.3698 318450.8233 281960.0731 1.134760125 0.896412901 1.144184695 1.148622021 0.96337993 0.825442049 0.751648444 0.646514834 1.129418147 1 18.10513136 -6.037149993 3.897838726 0.842861366 1.072065712 0.31820159 0.141586348 0.25195515 8.170770327 0.047048052 0.049420639 9.18E-07 6.037149993 0.229204346 VDDSPSTSGGSS(ph)DGDQR ddPTM_HeLa_A486_30min_R1 3 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDSPSTSGGS(0.011)S(0.989)DGDQR;VDDSPSTSGGS(0.107)S(0.893)DGDQR;VDDSPSTSGGS(0.014)S(0.986)DGDQR ;; 343.84 1.34E-92 540700000 379555 530308 333835 129340 455184 505920 470246 448767 431503 459518 TRUE FALSE FALSE 352950.1545 488284.4627 463104.8524 301110.0565 398090.5783 443504.7342 352585.477 346592.5506 468906.0275 344451.7018 1.024672407 1.417570185 1.344469631 0.874172068 1.155722489 1.287567261 1.023613689 1.006215236 1.361311397 1 18.39394218 -7.125395755 0.019896537 1.11E-06 2.267377105 0.051319256 0.175308442 837.3557151 14.4700154 810.5681698 833.3436343 7.49E-08 7.125395755 2.267375999 VDDSTGTVIS(ph)DVEEDAGELSR ddPTM_HeLa_A485_30min_R1 1 VDDSTGTVISDVEEDAGELSR 21 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 VDDSTGT(0.001)VIS(0.999)DVEEDAGELSR 142.74 2.35E-09 185800000 87539 103230 107010 93306 124440 92573 112420 122680 104090 121470 TRUE FALSE FALSE 107011.7485 115301.8505 146597.4521 98403.07052 112050.3167 97419.97913 88400.54861 92592.53765 124979.9082 91189.76449 1.17350614 1.264416584 1.607608627 1.079102146 1.228759799 1.068321425 0.96941306 1.015383011 1.370547549 1 16.47658428 -5.372998787 22.46426458 1.103178987 1.34076308 0.351500771 0.151760908 12.31104431 2458.405 0.043117894 0.063954127 4.24E-06 5.372998787 0.237584093 VDELT(ph)T(ph)EIK ddPTM_HeLa_A486_30min_R1 1 VDELTTEIK 9 0 P49454 P49454 CENPF Centromere protein F 2 0 VDELT(1)T(1)EIK 57.532 0.0068393 0 58154 64576 36136 30874 64066 65500 83668 79165 53742 78079 TRUE FALSE FALSE 54077.70491 59458.76258 50128.82696 71876.23229 56030.24489 57419.27596 62733.38145 61140.85766 58400.39983 58527.51019 0.923970706 1.015911362 0.856500247 1.228076029 0.957331769 0.98106473 1.071861442 1.044651608 0.997828195 1 15.83682729 VDGETAS(ph)DSESR ddPTM_HeLa_A485_30min_R1 1 VDGETASDSESR 12 0 O95674 O95674 CDS2 Phosphatidate cytidylyltransferase 2 1 0 VDGET(0.331)AS(0.669)DS(0.001)ESR 159.58 4.96E-09 201370000 311170 228030 120560 274840 138360 165790 183530 203880 173030 589420 TRUE FALSE FALSE 380388.693 254696.1249 165160.1609 289853.8133 124584.3926 174470.508 144317.3162 153878.1103 207755.5339 442488.4415 0.859657919 0.575599498 0.373253051 0.655053977 0.281554004 0.394293933 0.326149347 0.347756226 0.469516296 1 18.75528024 -10.41699204 4.872830501 1.000772044 0.464769494 0.464048827 0.168602641 0.001461184 0.000174823 0.168680846 0.040855294 3.83E-11 10.41699204 -0.53600255 VDGIPNDS(ph)SDSEMEDK ddPTM_HeLa_A486_30min_R1 1 VDGIPNDSSDSEMEDK 16 0 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.498)S(0.498)DS(0.003)EMEDK 134.14 2.76E-07 0 58383 72046 36798 31775 60457 84503 88089 75083 55033 98852 TRUE FALSE FALSE 54290.65319 66336.81257 51047.17108 73973.80582 52873.91932 74077.87902 66048.20049 57988.23995 59803.30475 74098.81578 0.732679094 0.895247945 0.688906706 0.998312929 0.713559573 0.999717448 0.891352983 0.782579847 0.807075041 1 16.17716287 -5.249632211 24.98213028 0.873541809 0.784574934 0.186161189 0.104965413 1552.294127 3284406.942 0.027300488 0.046797882 5.63E-06 5.249632211 -0.088966875 VDGIPNDS(ph)SDSEMEDKTTANLAALK ddPTM_HeLa_A485_30min_R1 2 VDGIPNDSSDSEMEDKTTANLAALK 25 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.452)S(0.452)DS(0.095)EMEDKTTANLAALK;VDGIPNDS(0.499)S(0.499)DS(0.001)EMEDKTTANLAALK ; 130.32 2.54E-06 150510000 114164 54497 43833 240100 96403 77864 134569 91899 58435 314150 TRUE FALSE FALSE 139559.3879 60869.95009 60048.65074 253216.055 86804.77883 81940.83864 105817.2338 69360.62616 70162.3685 235838.1865 0.591759079 0.258100484 0.254618014 1.073685559 0.368069226 0.347445169 0.448685751 0.29410261 0.297502154 1 17.84743781 -10.38568544 3.675786893 1.003102415 0.436665028 0.342520725 0.233960712 418054418.3 675813191.5 13968808.04 0.05953668 4.11E-11 10.38568544 -0.566437387 VDGIPNDS(ph)SDSEMEDKTTANLAALK ddPTM_HeLa_A486_30min_R1 2 VDGIPNDSSDSEMEDKTTANLAALK 25 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.436)S(0.436)DS(0.129)EMEDKTTANLAALK;VDGIPNDS(0.442)S(0.442)DS(0.116)EMEDKTTANLAALK ; 125.47 3.64E-06 467330000 264960 388030 158983 239170 328890 593990 691210 587430 371960 634900 TRUE FALSE FALSE 246387.6723 357281.0896 220545.4753 556799.847 287637.5494 520709.553 518261.9471 453685.0125 404201.7923 475916.9075 0.517711534 0.750721573 0.463411726 1.169951809 0.60438607 1.094118626 1.088975699 0.953286184 0.849311688 1 18.86035018 -5.253735951 24.99989946 0.959202369 0.5946256 0.542099308 0.163287396 471.4738739 1530068.527 0.043297639 0.07321387 5.58E-06 5.253735951 -0.364576768 VDGIPNDSS(ph)DSEMEDKTTANLAALK ddPTM_HeLa_A486_30min_R1 1 VDGIPNDSSDSEMEDKTTANLAALK 25 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.185)S(0.77)DS(0.045)EMEDKTTANLAALK 199.81 1.22E-28 204770000 125590 184060 78496 113370 157580 308230 326810 301380 173420 316650 TRUE FALSE FALSE 116786.7895 169474.4153 108891.7534 263931.0894 137814.847 270203.7165 245038.6814 232762.3531 188452.1852 237358.779 0.492026417 0.714001041 0.458764381 1.11194998 0.580618284 1.138376755 1.03235567 0.980635113 0.793954983 1 17.85670988 -5.256147272 24.98574301 0.943569092 0.570837646 0.543498917 0.164963225 345.3833791 1630661.376 0.043947557 0.073327313 5.54E-06 5.256147272 -0.372731446 VDGPRS(ph)PS(ph)YGR ddPTM_HeLa_A485_30min_R1 4 VDGPRSPSYGR 11 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 VDGPRS(0.972)PS(0.893)Y(0.136)GR;VDGPRS(0.937)PS(0.937)Y(0.126)GR;VDGPRS(1)PS(0.999)Y(0.001)GR;VDGPRS(0.962)PS(0.962)Y(0.076)GR ;;; 126.57 0.00023476 23818000000 14451400 14401090 18253800 22016400 26784000 15103550 21207400 18350400 18030800 28368200 TRUE FALSE FALSE 17666064.07 16085172.2 25006640.22 23219100.18 24117290.92 15894348.52 16676265.74 13849935.63 21649416.17 21296529.82 0.829527826 0.755295456 1.17421197 1.090276227 1.132451677 0.746335138 0.783050848 0.650337672 1.016570134 1 24.34411503 -6.27473426 24.84095396 0.813891867 0.998059623 0.187760728 0.159032066 1142.820082 2135307.817 0.058681352 0.052049238 5.31E-07 6.27473426 0.184167756 VDGPRS(ph)PS(ph)YGR ddPTM_HeLa_A486_30min_R1 4 VDGPRSPSYGR 11 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 VDGPRS(0.995)PS(0.99)Y(0.015)GR;VDGPRS(1)PS(0.994)Y(0.006)GR;VDGPRS(0.954)PS(0.927)Y(0.119)GR;VDGPRS(0.999)PS(0.995)Y(0.006)GR ;;; 104.86 0.0022774 24053830000 8260750 14049230 11346380 5128740 17413450 13677710 15559920 15475940 11320420 11631480 TRUE FALSE FALSE 7681714.084 12935917.85 15740002.2 11939965.91 15229292.73 11990293.2 11666663.44 11952406.3 12301683.12 8718881.7 0.881043504 1.483667091 1.805277643 1.36943777 1.74670253 1.375209989 1.338091723 1.370864603 1.410924422 1 23.05571167 -8.896488666 0.641087319 0.981045409 1.457405808 0.21606514 0.237962373 5.674798344 2.887909949 0.523421626 0.095094872 1.27E-09 8.896488666 0.476360398 VDGPRS(ph)PS(ph)YGRS(ph)R ddPTM_HeLa_A485_30min_R1 1 VDGPRSPSYGRSR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 VDGPRS(0.957)PS(0.684)Y(0.359)GRS(1)R 84.213 0.0025819 1161100000 1300800 1553100 1943100 1404000 3719900 1715900 2230000 2682400 1965400 2213500 TRUE FALSE FALSE 1590158.472 1734721.535 2661933.549 1480696.965 3349533.695 1805741.871 1753542.283 2024537.194 2359837.752 1661715.186 0.956938039 1.043934333 1.601919252 0.891065435 2.015708662 1.086673508 1.05526043 1.218341874 1.420121674 1 20.6642417 -4.54647135 24.63325043 1.292672615 0.978686784 0.11926094 0.314070327 326.2299108 340618.5882 0.07682211 0.203277051 2.84E-05 4.54647135 -0.313985831 VDGPRS(ph)PSY(ph)GRS(ph)R ddPTM_HeLa_A486_30min_R1 1 VDGPRSPSYGRSR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 VDGPRS(0.909)PS(0.483)Y(0.608)GRS(0.999)R 87.974 0.012659 1520200000 1196400 1975400 2455200 979990 4108300 2122500 2603800 3060500 1974400 1138700 TRUE FALSE FALSE 1112538.538 1818862.11 3405919.193 2281466.246 3592998.706 1860647.53 1952301.7 2363690.96 2145542.582 853562.1083 1.303406662 2.130907748 3.990241787 2.67287667 4.209416832 2.179861913 2.287240355 2.769207931 2.513633819 1 19.70313661 -9.039164891 0.696007237 0.925099595 2.774724167 0.274469814 0.817486143 7.322477362 3.764562645 2.370641505 0.313330016 9.14E-10 9.039164891 1.849624572 VDGPRS(ph)PSYGR ddPTM_HeLa_A485_30min_R1 5 VDGPRSPSYGR 11 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 VDGPRS(0.999)PS(0.001)YGR;VDGPRS(0.995)PS(0.005)YGR;VDGPRS(0.7)PS(0.3)YGR;VDGPRS(0.947)PS(0.053)YGR;VDGPRS(0.994)PS(0.006)YGR ;;;; 135.02 1.23E-05 21211030000 6736740 11416920 15027420 11482260 34173820 16518160 25646350 31188530 15122970 19635500 TRUE FALSE FALSE 8235304.572 12752029.48 20586688 12109506.79 30771354.49 17383025.32 20166797.81 23539494.12 18158011.36 14740731.21 0.558676802 0.865087986 1.396585264 0.821499735 2.087505297 1.179251223 1.368100233 1.596901387 1.231825688 1 23.81330476 -4.392160309 1.144175863 1.390364487 0.249117836 0.37281402 0.328364165 1.283253394 1.667748772 0.09856284 1.667924086 4.05E-05 4.392160309 -1.141246652 VDGPRS(ph)PSYGR ddPTM_HeLa_A486_30min_R1 2 VDGPRSPSYGR 11 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 VDGPRS(1)PSYGR;VDGPRS(0.954)PS(0.046)YGR ; 164.2 2.95E-08 12754100000 2212200 3705000 5795600 3101000 13327400 5485000 8250300 9545200 3553100 3751900 TRUE FALSE FALSE 2057136.204 3411402.307 8039811.532 7219284.716 11655753.22 4808316.467 6185987.677 7371966.33 3861085.569 2812399.819 0.73145226 1.212986249 2.858701482 2.566948222 4.144415435 1.709684532 2.199540632 2.621236952 1.372879326 1 21.42337028 -4.634152684 5.0077342 2.41334221 0.846214069 0.292080979 0.83172267 0.220661962 8.525394388 0.211556393 0.595629981 2.32E-05 4.634152684 -1.567128141 VDHGAEIITQS(ph)PGR ddPTM_HeLa_A485_30min_R1 6 VDHGAEIITQSPGR 14 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR ;;;;; 261.06 7.01E-42 17891010000 4572170 5716600 6075270 6292430 7793020 5278920 6582800 6640220 6567330 7331930 TRUE FALSE FALSE 5589233.443 6385106.642 8322765.186 6636169.518 7017119.566 5555316.088 5176331.003 5011695.634 7885332.892 5504214.785 1.015446101 1.160039514 1.512071296 1.205652355 1.274862962 1.009284031 0.940430417 0.910519634 1.432599054 1 22.39210534 -6.260580278 24.97674284 1.045590587 1.243443329 0.192397748 0.177761166 123.7127779 3596746.036 0.06142246 0.058088257 5.49E-07 6.260580278 0.197852742 VDHGAEIITQS(ph)PGR ddPTM_HeLa_A486_30min_R1 6 VDHGAEIITQSPGR 14 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 1 0 VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR ;;;;; 258.9 8.53E-42 21669850000 6267400 7064780 5580600 2202380 7258740 6504520 6546380 7194590 6014470 6986550 TRUE FALSE FALSE 5828087.625 6504941.103 7741557.774 5127251.942 6348281.144 5702058.456 4908406.483 5556538.914 6535809.102 5237072.405 1.112852215 1.242094934 1.478222406 0.97903018 1.212181282 1.088787401 0.937242433 1.061000972 1.247989067 1 22.32032912 -5.282193497 24.999771 1.07824609 1.274160408 0.36193583 0.123165733 889.1842222 1071082.081 0.035142232 0.052181906 5.22E-06 5.282193497 0.195914318 VDHGAEIITQS(ph)PGRS(ph)S(ph)VAS(ph)PR ddPTM_HeLa_A485_30min_R1 2 VDHGAEIITQSPGRSSVASPR 21 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 4 0 VDHGAEIIT(0.133)QS(0.867)PGRS(1)S(1)VAS(1)PR;VDHGAEIIT(0.001)QS(0.999)PGRS(1)S(1)VAS(1)PR ; 113.92 2.55E-05 1757840000 1124010 1428960 1417840 1308320 1874710 1420350 1631460 1812360 1402090 1631360 TRUE FALSE FALSE 1374042.147 1596064.442 1942358.017 1379790.209 1688057.29 1494717.33 1282885.243 1367875.868 1683476.602 1224691.975 1.121949172 1.303237446 1.585997179 1.126642647 1.378352536 1.220484302 1.047516657 1.116914209 1.374612259 1 20.22398751 -6.52059951 23.5253085 1.143003155 1.308162569 0.211668548 0.152859038 69.90231598 721538.6278 0.057244704 0.04518944 3.02E-07 6.52059951 0.165159414 VDHGAEIITQS(ph)PGRS(ph)S(ph)VAS(ph)PR ddPTM_HeLa_A486_30min_R1 2 VDHGAEIITQSPGRSSVASPR 21 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 4 0 VDHGAEIIT(0.001)QS(0.999)PGRS(1)S(1)VAS(1)PR;VDHGAEIIT(0.012)QS(0.988)PGRS(1)S(1)VAS(1)PR ; 125.62 6.85E-07 1651750000 423830 491700 463360 165462 552940 427520 498010 446940 477100 434160 TRUE FALSE FALSE 394121.7057 452735.9013 642785.4012 385203.898 483585.1092 374776.9291 373402.6306 345181.5186 518455.4121 325443.5101 1.211029544 1.391135135 1.975105913 1.18362753 1.485926418 1.151588271 1.147365423 1.060649569 1.59307344 1 18.31204762 -6.045984532 1.802775206 1.192735087 1.485234353 0.191438316 0.253476411 0.584928122 3.815969006 0.097501174 0.10394472 9.00E-07 6.045984532 0.292499266 VDHGAEIITQS(ph)PGRSS(ph)VAS(ph)PR ddPTM_HeLa_A485_30min_R1 4 VDHGAEIITQSPGRSSVASPR 21 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 3 0 VDHGAEIITQS(1)PGRS(0.322)S(0.678)VAS(1)PR;VDHGAEIITQS(1)PGRS(0.287)S(0.714)VAS(0.999)PR;VDHGAEIIT(0.17)QS(0.829)PGRS(0.21)S(0.791)VAS(1)PR;VDHGAEIIT(0.009)QS(0.991)PGRS(0.216)S(0.784)VAS(1)PR ;;; 191.13 3.03E-19 3083720000 1018371 1243534 1299102 1318706 1734330 1219252 1505991 1622570 1364034 1613288 TRUE FALSE FALSE 1244904.116 1388954.484 1779693.89 1390743.57 1561654.016 1283090.149 1184223.72 1224632.163 1637783.112 1211124.992 1.0278907 1.146830008 1.469455177 1.148307218 1.289424317 1.059420091 0.977788195 1.011152583 1.352282484 1 20.20791633 -6.274504388 24.13681807 1.074429413 1.222795259 0.17919964 0.1452234 857.7318514 1584602.157 0.051826021 0.046009173 5.31E-07 6.274504388 0.148365846 VDHGAEIITQS(ph)PGRSS(ph)VAS(ph)PR ddPTM_HeLa_A486_30min_R1 3 VDHGAEIITQSPGRSSVASPR 21 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77;P11137-4 MAP2 Microtubule-associated protein 2 3 0 VDHGAEIIT(0.001)QS(0.999)PGRS(0.206)S(0.794)VAS(1)PR;VDHGAEIIT(0.145)QS(0.855)PGRS(0.039)S(0.961)VAS(1)PR;VDHGAEIIT(0.169)QS(0.831)PGRS(0.069)S(0.931)VAS(1)PR ;; 152.15 2.03E-09 2129600000 801670 927050 706740 332792 1058910 881080 994310 994230 770380 901390 TRUE FALSE FALSE 745477.0728 853587.1817 980408.6552 774756.5944 926091.6339 772381.3078 745523.1213 767865.5329 837157.1587 675676.0769 1.103305413 1.263308279 1.451003948 1.146639079 1.370614804 1.143123657 1.103373564 1.136440314 1.238991859 1 19.36597225 -6.394013641 7.995954277 1.130064382 1.270114962 0.305344438 0.107468754 0.377611805 22.75445243 0.037262246 0.032803182 4.04E-07 6.394013641 0.14005058 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK ddPTM_HeLa_A485_30min_R1 2 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK 30 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;K7ESF4 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 ; ; 171.93 8.29E-15 103874000 72525.8 81948.3 70959 83533 100448 83616.5 112495 114287 80670 137602 FALSE FALSE TRUE 88658.914 91531.44083 97209.68695 88096.19627 90447.04443 87994.53064 88459.52425 86257.93405 96859.72905 103300.3538 0.858263411 0.886070933 0.941039245 0.852816017 0.875573424 0.851831842 0.856333217 0.835020703 0.937651475 1 16.65648567 -7.992264099 4.90639859 0.999812118 0.871469203 0.69907512 0.027537345 0.086707274 6.580029013 0.028185424 0.007352267 1.02E-08 7.992264099 -0.128342915 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK ddPTM_HeLa_A486_30min_R1 1 VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK 30 0 P06744-2;P06744;A0A2U3TZU2;K7EQ48;K7ESF4 P06744-2 GPI Glucose-6-phosphate isomerase 0 0 144.43 8.01E-19 16362000 25164 24609 18181 4860.3 26759 23414 25755 27789 24290 24270 FALSE FALSE TRUE 23400.13355 22658.89322 25221.1701 11315.02403 23402.6367 20525.41874 19310.82659 21462.05133 26395.47676 18192.63403 1.286242196 1.245498215 1.386339662 0.621956337 1.286379788 1.12822688 1.061464028 1.179711047 1.45088813 1 14.15106682 VDIDAPDVDVHGPDWHLK ddPTM_HeLa_A485_30min_R1 5 VDIDAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;;;; ;;;; 228.76 1.66E-34 701399000 1151846 1011098 812016 1379726 1362690 1192422 1572813 1376411 1071721 2027250 FALSE FALSE TRUE 1408070.169 1129337.116 1112414.509 1455096.938 1227015.799 1254855.372 1236768.654 1038844.044 1286805.574 1521893.884 0.925209165 0.742060355 0.730940916 0.956109327 0.806242677 0.824535393 0.812651044 0.682599526 0.845529106 1 20.53743634 -8.024959929 24.41224422 1.000000004 0.807553551 0.34190002 0.078740149 2034.678905 1990030.885 0.075644404 0.019531301 9.44E-09 8.024959929 -0.192446454 VDIDAPDVDVHGPDWHLK ddPTM_HeLa_A486_30min_R1 5 VDIDAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;;;; ;;;; 225.13 2.83E-34 643486000 884851 1026878 624689 425138 1208279 1118508 1238574 1235503 852468 1182845 FALSE FALSE TRUE 822827.5143 945504.4475 866585.3106 989742.7493 1056725.381 980517.8551 928669.6849 954205.9377 926360.6126 886652.913 0.928015351 1.066374941 0.977367015 1.116268536 1.19181403 1.105864359 1.047388072 1.076188804 1.044783815 1 19.75800994 -3.626633385 0.996415891 1.083587576 0.581935614 0.352250345 0.057462246 6.759910513 2.201746959 0.019333601 4.913135777 0.000236247 3.626633385 -0.501651962 VDIDAPDVEVHDPDWHLK ddPTM_HeLa_A485_30min_R1 1 VDIDAPDVEVHDPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 165.8 8.16E-12 97713000 37415 36955 30605 50460 51173 40937 54468 50295 39301 72161 FALSE FALSE TRUE 45737.83767 41276.56578 41927.06308 53216.50203 46078.03644 43080.39802 42830.46684 37960.07239 47188.35021 54172.59072 0.844298511 0.761945575 0.773953442 0.982351062 0.850578417 0.795243451 0.790629842 0.7007247 0.871074275 1 15.72527547 -11.26043378 1.397200979 1.423689802 0.816698838 0.362786014 0.071917297 98320.67626 13292.6765 130644.9075 0.021279267 5.49E-12 11.26043378 -0.606990965 VDIDT(ph)PDIDIHGPEGK ddPTM_HeLa_A485_30min_R1 4 VDIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK ;;; 251.75 1.35E-42 2184350000 2528820 1387570 1156100 3064440 2282470 1590140 2205790 1575180 1662610 4132240 TRUE FALSE FALSE 3091347.285 1549834.241 1583789.499 3231842.598 2055219.273 1673397.272 1734504.947 1188864.635 1996280.577 3102148.616 0.996518113 0.499600255 0.510545978 1.041807791 0.662514769 0.53943169 0.559130191 0.383239097 0.643515454 1 21.56483637 -4.247698172 23.98931379 0.631750791 0.996518545 0.204632123 0.203112796 2128.17414 3715242.079 0.050970454 0.953526862 5.65E-05 4.247698172 0.364767754 VDIDT(ph)PDIDIHGPEGK ddPTM_HeLa_A486_30min_R1 5 VDIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK ;;;; 224.86 7.84E-34 1811820000 2901290 3282470 1970850 1448150 3421220 4341820 4799340 4275960 3260230 4886360 TRUE FALSE FALSE 2697924.553 3022355.123 2734015.901 3371366.385 2992098.686 3806170.393 3598494.37 3302417.252 3542829.361 3662783.651 0.736577644 0.82515251 0.746431174 0.920438308 0.816892006 1.039146932 0.982447972 0.901614064 0.967250512 1 21.80450906 -5.648357165 1.129103695 0.969059256 0.767507826 0.677887934 0.057737246 0.299737763 0.800257769 0.023277336 0.039410415 2.25E-06 5.648357165 -0.201551429 VDIDT(ph)PDINIEGSEGK ddPTM_HeLa_A485_30min_R1 4 VDIDTPDINIEGSEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK ;;; 309.45 2.05E-77 849590000 1668250 983150 791880 2076330 1719150 1254180 1872040 1384260 1247040 3091510 TRUE FALSE FALSE 2039346.457 1098120.84 1084829.365 2189754.65 1547985.39 1319846.925 1472063.361 1044768.065 1497309.489 2320853.452 0.878705398 0.473153891 0.467426913 0.943512676 0.666989718 0.568690334 0.63427674 0.450165461 0.64515469 1 21.146224 -11.31413609 2.0167414 2.595325563 0.629071831 0.322368787 0.15779936 7143201.536 904408.8273 51876138.6 0.04095403 4.85E-12 11.31413609 -1.966253733 VDIDT(ph)PDINIEGSEGK ddPTM_HeLa_A486_30min_R1 4 VDIDTPDINIEGSEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK ;;; 349.47 1.20E-103 993930000 1693020 1703000 1029630 890670 1941830 2428510 3026340 2661930 1633510 2963480 TRUE FALSE FALSE 1574348.041 1568048.078 1428330.31 2073524.772 1698267.575 2128905.127 2269117.723 2055866.649 1775103.962 2221405.319 0.708717147 0.705881121 0.642985005 0.933429282 0.764501444 0.958359607 1.021478477 0.925480204 0.799090534 1 21.08304122 -5.482509027 1.262202993 0.931804354 0.680627853 0.588526222 0.083545829 0.334790691 1.077086075 0.031039381 0.06049885 3.29E-06 5.482509027 -0.251176501 VDINT(ph)PDVDVHGPDWHLK ddPTM_HeLa_A485_30min_R1 5 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK ;;;; 235.23 6.91E-45 8234420000 4772347 3448533 2664455 4973120 5496950 4192635 5456320 4979310 3434968 6716580 TRUE FALSE FALSE 5833939.126 3851808.936 3650147.782 5244788.953 4949654.357 4412154.886 4290532.658 3758126.415 4124334.57 5042260.215 1.157008737 0.763905227 0.723911029 1.040166261 0.981634058 0.875035142 0.850914565 0.745325758 0.817953536 1 22.26563914 -6.617815449 3.469063738 0.832136958 0.918820604 0.062061371 0.131864108 0.685501184 16.23898028 0.055031221 0.041497683 2.41E-07 6.617815449 0.086683646 VDINT(ph)PDVDVHGPDWHLK ddPTM_HeLa_A486_30min_R1 4 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK;VDINT(1)PDVDVHGPDWHLK ;;; 257.2 1.88E-57 9914900000 5067850 5504230 3763880 2778520 6951240 6509550 8114400 7406910 4975790 7705740 TRUE FALSE FALSE 4712619.885 5068054.769 5221355.136 6468534.979 6079350.661 5706467.905 6084091.295 5720518.285 5407095.484 5776172.548 0.815872422 0.877407094 0.903947223 1.119865261 1.052487718 0.987932382 1.05330844 0.990364854 0.936103525 1 22.46168241 -5.058300109 5.620866046 1.02110506 0.855855402 0.686925072 0.048631601 0.119440176 8.000499098 0.013928723 0.025159791 8.74E-06 5.058300109 -0.165249658 VDINTPDVDVHGPDWHLK ddPTM_HeLa_A485_30min_R1 1 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 103.85 8.36E-05 11018000 7773.9 7545.9 7298.9 8807.5 12299 7407.5 12210 11553 8345.5 14847 FALSE FALSE TRUE 9503.177235 8428.327364 9999.066843 9288.631423 11074.46838 7795.345246 9601.233753 8719.608636 10020.3653 11145.91614 0.852615175 0.756180762 0.897105874 0.833366348 0.993589781 0.699390265 0.861412703 0.782314215 0.89901675 1 13.44422758 -8.029484675 6.867652347 0.99998938 0.835793523 0.31370387 0.075772009 0.277267925 57.27851869 0.070085831 0.018153373 9.34E-09 8.029484675 -0.164195857 VDISAPDVDVHGPDWHLK ddPTM_HeLa_A485_30min_R1 1 VDISAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 127.78 2.04E-05 64305000 21559 20103 19410 20491 31516 24828 30744 32992 25204 32281 FALSE FALSE TRUE 26354.72517 22453.87098 26590.56672 21610.37144 28378.15638 26127.95569 24175.29324 24900.66027 30262.21162 24233.94079 1.08751298 0.926546416 1.09724485 0.89173988 1.171008736 1.078155465 0.997579942 1.027511806 1.248753221 1 14.56474141 -5.771649412 24.99997196 1.083613712 1.002351674 0.170567028 0.093122411 397.0180195 972123.315 0.02786994 0.031951872 1.69E-06 5.771649412 -0.081262038 VDISAPDVDVHGPDWHLK ddPTM_HeLa_A486_30min_R1 1 VDISAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 102.58 0.00044872 31630000 60857 62106 49173 38515 65201 73426 76111 86863 61945 93359 FALSE FALSE TRUE 56591.23857 57184.49437 68214.1025 89664.86644 57022.8826 64367.44666 57067.22278 67086.19111 67314.44248 69981.29873 0.808662308 0.817139656 0.974747593 1.281268968 0.814830299 0.919780682 0.8154639 0.958630267 0.961891872 1 16.09468182 -4.757576461 23.64372699 0.963207678 0.812900844 0.20109173 0.121835308 82.45730604 504652.8165 0.032959106 0.080409931 1.75E-05 4.757576461 -0.150306835 VDKETNTETPAPS(ph)PTVVRPK ddPTM_HeLa_A486_30min_R1 1 VDKETNTETPAPSPTVVRPK 20 2 H3BLZ3;Q8IX03-2;H0YAU4;H0YBE8;Q8IX03 H3BLZ3 WWC1 Protein KIBRA 1 0 VDKETNTET(0.001)PAPS(0.952)PT(0.048)VVRPK 77.693 0.0013133 236250000 140950 136310 64230 62045 115260 176420 197830 181690 122460 221880 TRUE FALSE FALSE 131070.1329 125508.2992 89101.57614 144443.8956 100803.016 154655.0941 148330.8416 140323.1533 133074.9314 166319.8038 0.788060892 0.754620294 0.535724394 0.868470815 0.606079455 0.92986578 0.891841129 0.843694798 0.800114769 1 17.34360044 -6.274031819 24.97637872 0.88325534 0.712093501 0.456060825 0.099363699 748.8986986 1485393.24 0.033725722 0.02994327 5.32E-07 6.274031819 -0.171161839 VDKGVVPLAGTNGETTTQGLDGLSER ddPTM_HeLa_A485_30min_R1 1 VDKGVVPLAGTNGETTTQGLDGLSER 26 1 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 112.39 7.51E-08 18612000 3152.1 4794.3 4242.1 3231.3 6039.7 4968 6848.3 5880.8 4951.6 5246.9 FALSE FALSE TRUE 3853.27377 5354.95168 5811.429319 3407.817737 5438.366261 5228.116798 5385.10476 4438.524579 5945.340701 3938.944392 0.97825036 1.359489027 1.475377345 0.865160154 1.380665915 1.327288806 1.367144144 1.126830982 1.509374114 1 11.94359333 -4.250843169 24.28690287 1.274264337 0.978250109 0.161552738 0.1975018 1869.933405 4285831.147 0.046732838 0.64395896 5.61E-05 4.250843169 -0.296014228 VDLKS(ph)PQVDIK ddPTM_HeLa_A485_30min_R1 1 VDLKSPQVDIK 11 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VDLKS(1)PQVDIK 128.06 2.50E-05 148900000 392970 179050 111550 702350 320660 238660 438920 314230 214690 910680 TRUE FALSE FALSE 480384.8208 199988.34 152816.987 740717.6021 288733.9645 251155.8686 345141.1564 237164.5998 257776.3137 683664.2358 0.702661914 0.292524209 0.223526373 1.083452319 0.422332995 0.367367277 0.504840151 0.34690216 0.377051044 1 19.38292843 -10.50486427 2.941953533 1.018268879 0.476556493 0.302880146 0.236582407 75757699.79 85444250.7 11166954.05 0.06164625 3.13E-11 10.50486427 -0.541712385 VDLKS(ph)PQVDIK ddPTM_HeLa_A486_30min_R1 3 VDLKSPQVDIK 11 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VDLKS(1)PQVDIK;VDLKS(1)PQVDIK;VDLKS(1)PQVDIK ;; 150.37 3.10E-07 393110000 1120800 1113150 447457 827510 1000410 1709320 2104960 1729390 976570 2347850 TRUE FALSE FALSE 1042237.708 1024939.94 620724.3337 1926485.1 874929.2493 1498441.477 1578276.744 1335645.649 1061219.874 1759933.078 0.592203034 0.582374383 0.352697691 1.094635429 0.497137795 0.851419577 0.896782249 0.75891843 0.602988765 1 20.74708914 -5.243211859 24.99891908 0.796246056 0.516419987 0.385145414 0.175729665 914.8369346 1254690.921 0.045772442 0.079089091 5.71E-06 5.243211859 -0.279826069 VDLKS(ph)PQVDIKGPK ddPTM_HeLa_A486_30min_R1 1 VDLKSPQVDIKGPK 14 2 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VDLKS(1)PQVDIKGPK 127.97 1.08E-05 337810000 809780 561610 167820 534230 671480 778120 1342100 1157500 364700 1475600 TRUE FALSE FALSE 753018.6037 517105.9783 232804.3984 1243714.438 587256.7171 682123.4657 1006292.385 893962.518 396312.4896 1106100.155 0.680786997 0.467503757 0.210473163 1.124413944 0.530925445 0.616692315 0.909766064 0.808211186 0.358297111 1 20.07705059 -5.244161413 24.99278988 0.746271413 0.454379594 0.263299038 0.237181098 1201.378053 1737805.763 0.06302957 0.108836491 5.70E-06 5.244161413 -0.29189182 VDLTLDPDTAHPALMLS(ph)PDRR ddPTM_HeLa_A485_30min_R1 3 VDLTLDPDTAHPALMLSPDRR 21 1 H0YAD6;D6REK2;Q8WV44-3;Q8WV44-2;Q8WV44 H0YAD6 TRIM41 E3 ubiquitin-protein ligase TRIM41 1 0 VDLTLDPDTAHPALMLS(1)PDRR;VDLTLDPDTAHPALMLS(1)PDRR;VDLTLDPDTAHPALMLS(1)PDRR ;; 184.47 2.82E-19 326049000 134475 152170 148942 154104 217863 170909 226806 255451 151417 205482 TRUE FALSE FALSE 164388.4998 169964.9578 204041.8438 162522.3113 196171.7948 179857.531 178347.0453 192801.2417 181805.003 154259.119 1.065664713 1.101814654 1.322721438 1.053566962 1.271703067 1.165944238 1.156152365 1.249853123 1.178568918 1 17.23499625 -4.542124447 24.99955605 1.183909549 1.074702049 0.136560954 0.091290919 318.922763 414269.7671 0.021155105 0.05598944 2.87E-05 4.542124447 -0.1092075 VDLTLDPDTAHPALMLS(ph)PDRR ddPTM_HeLa_A486_30min_R1 2 VDLTLDPDTAHPALMLSPDRR 21 1 H0YAD6;D6REK2;Q8WV44-3;Q8WV44-2;Q8WV44 H0YAD6 TRIM41 E3 ubiquitin-protein ligase TRIM41 1 0 VDLTLDPDTAHPALMLS(1)PDRR;VDLTLDPDTAHPALMLS(1)PDRR ; 198.56 1.80E-26 364434000 118520 163872 153692 96169 213398 204010 257841 257953 191738 236765 TRUE FALSE FALSE 110212.36 150886.1859 213205.6584 223886.2921 186631.633 178841.3204 193326.4546 199222.733 208358.0042 177477.5029 0.620993412 0.850170773 1.201310898 1.26149111 1.051579101 1.007684453 1.089301187 1.122523868 1.173996708 1 17.43727663 -4.541870852 3.501889039 1.115519482 0.647584985 0.793920472 0.080775716 0.101321759 2.534162207 0.022659048 0.08707803 2.87E-05 4.541870852 -0.467934497 VDLTLLS(ph)PK ddPTM_HeLa_A485_30min_R1 3 VDLTLLSPK 9 0 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VDLTLLS(1)PK;VDLTLLS(1)PK;VDLTLLS(1)PK ;; 163.46 1.15E-05 308884000 564421 450195 313077 892457 681961 488026 820929 707904 411645 1171615 TRUE FALSE FALSE 689974.5042 502841.3891 428897.2105 941209.6661 614062.5683 513578.2867 645530.8128 534289.434 494258.3757 879552.9425 0.784460458 0.571701105 0.48763092 1.070100071 0.698153049 0.583908327 0.733930593 0.607455684 0.561942723 1 19.74641089 -10.19916572 5.003759094 1.000031676 0.677962604 0.277468395 0.156028638 5.59E-05 8.95E-06 0.153219798 0.03715761 6.32E-11 10.19916572 -0.322069072 VDLTLLS(ph)PK ddPTM_HeLa_A486_30min_R1 4 VDLTLLSPK 9 0 E7EVA0;B5MEG9;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VDLTLLS(1)PK;VDLT(0.001)LLS(0.999)PK;VDLTLLS(1)PK;VDLTLLS(1)PK ;;; 169.65 6.75E-06 893680000 2042030 2007610 1030360 1569250 1862550 2282550 3246370 2757530 1574080 3442930 TRUE FALSE FALSE 1898894.242 1848519.672 1429342.986 3653293.306 1628931.611 2000952.188 2434093.889 2129700.615 1710522.522 2580797.918 0.735777966 0.716258975 0.553837624 1.415567364 0.631173638 0.775323079 0.943155554 0.825210142 0.662788245 1 21.29938575 VDNDENEHQLSLR ddPTM_HeLa_A485_30min_R1 6 VDNDENEHQLSLR 13 0 P06748;P06748-3;P06748-2;E5RGW4 P06748 NPM1 Nucleophosmin 0 0 ;;;;; ;;;;; 263.59 2.13E-40 3170036000 2090851 1919293 2055369 2739919 2839893 1861947 2398407 2081082 2290828 3339180 FALSE FALSE TRUE 2555953.592 2143737.621 2815735.524 2889593.837 2557143.281 1959435.666 1885967.751 1570693.376 2750576.167 2506783.879 1.01961466 0.855174488 1.123246223 1.152709598 1.020089248 0.78165321 0.752345572 0.626577101 1.097253014 1 21.25740619 -6.235357543 9.234749225 0.822029655 1.035949674 0.276614968 0.143720556 0.467208272 159.1220168 0.047991851 0.047400274 5.82E-07 6.235357543 0.213920019 VDNDENEHQLSLR ddPTM_HeLa_A486_30min_R1 6 VDNDENEHQLSLR 13 0 P06748;P06748-3;P06748-2;E5RGW4 P06748 NPM1 Nucleophosmin 0 0 ;;;;; ;;;;; 246.5 1.04E-34 3606364000 2268696 2734362 2029310 806180 3339119 2716977 2978247 2864322 2325463 2521779 FALSE FALSE TRUE 2109672.126 2517681.197 2815113.179 1876827.782 2920295.559 2381784.002 2233058.1 2212178.408 2527036.005 1890309.124 1.1160461 1.331888612 1.489234296 0.992868181 1.544877249 1.259997093 1.181319008 1.170273359 1.336837437 1 20.85019075 -11.58522712 0.30902012 0.561122533 1.29058555 0.20236792 0.158655392 84.10341711 2.942862332 24.79422633 0.151655608 2.60E-12 11.58522712 0.729463017 VDNLTYRT(ph)SPDSLRR ddPTM_HeLa_A485_30min_R1 2 VDNLTYRTSPDSLRR 15 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 VDNLT(0.004)YRT(0.498)S(0.498)PDSLRR;VDNLTYRT(0.545)S(0.455)PDSLRR ; 173.98 1.81E-12 786630000 122884 357870 260800 105296 487170 494050 643320 1236950 231085 184272 TRUE FALSE FALSE 150219.1219 399719.7834 357280.7728 111048.0539 438665.6442 519917.6941 505869.4266 933586.073 277461.6399 138336.3817 1.085897434 2.88947693 2.582695662 0.802739327 3.171007069 3.758358342 3.656806839 6.748666271 2.005702596 1 17.0778211 -5.962635602 7.802682088 3.770854338 1.964945201 0.183910923 1.517742254 0.322494153 56.7657714 0.45868109 0.518188908 1.09E-06 5.962635602 -1.805909137 VDNLTYRT(ph)SPDSLRR ddPTM_HeLa_A486_30min_R1 1 VDNLTYRTSPDSLRR 15 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 VDNLTYRT(0.5)S(0.5)PDSLRR 141.18 4.90E-07 190480000 88705 85210 119630 63565 302180 97310 190710 222330 77378 147520 TRUE FALSE FALSE 82487.23757 78457.64927 165953.9398 147982.5324 264277.7667 85304.88158 142992.3409 171710.3124 84085.18734 110580.0318 0.745950568 0.709510099 1.500758655 1.338239192 2.389923048 0.771431154 1.293111772 1.552814822 0.760401186 1 16.75473137 -4.754726574 24.62754845 1.363055708 0.727729924 0.222563326 0.442788986 178.4935546 654825.8932 0.112056947 0.282221579 1.76E-05 4.754726574 -0.635325784 VDNLTYRT(ph)SPDTLR ddPTM_HeLa_A485_30min_R1 1 VDNLTYRTSPDTLR 14 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.677)S(0.323)PDTLR 96.487 0.0011212 1418500000 497590 581910 552030 582370 861790 593220 850630 874910 519190 841520 TRUE FALSE FALSE 608277.1788 649959.3126 756248.8689 614183.3985 775987.1617 624280.0819 668885.9515 660336.9507 623386.6707 631744.551 0.962853068 1.028832479 1.197080161 0.972202131 1.228324266 0.988184355 1.058791802 1.045259432 0.986770158 1 19.26898179 -7.443437971 1.227477425 0.993149374 1.070407273 0.088256013 0.084246885 1.156660345 3.079291953 0.073671562 0.025997662 3.60E-08 7.443437971 0.077257899 VDNLTYRT(ph)SPDTLR ddPTM_HeLa_A486_30min_R1 2 VDNLTYRTSPDTLR 14 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.685)S(0.314)PDTLR;VDNLTYRT(0.945)S(0.054)PDTLR ; 167.14 6.30E-12 5151500000 940170 988620 1023740 392770 1740320 1071750 1438500 1555100 871270 1126230 TRUE FALSE FALSE 874268.938 910278.1507 1420159.545 914388.4095 1522032.838 939528.3818 1078572.085 1201037.678 946792.3851 844214.6775 1.035600258 1.078254353 1.682225603 1.083123089 1.802897863 1.112902212 1.277604043 1.422668558 1.121506662 1 19.68725039 -7.956006952 5.129208613 1.000976229 1.316632931 0.149020717 0.248017478 0.300261681 17.37728341 0.230366762 0.060033347 1.11E-08 7.956006952 0.315656702 VDNLTYRT(ph)SPDTLRR ddPTM_HeLa_A486_30min_R1 1 VDNLTYRTSPDTLRR 15 2 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.599)S(0.399)PDT(0.002)LRR 162.44 6.51E-12 4795500000 1593900 1713400 1937000 976480 3994800 1767000 3002600 3383100 1358000 2282600 TRUE FALSE FALSE 1482175.841 1577623.944 2687058.275 2273294.789 3493734.934 1549005.506 2251317.722 2612841.983 1475712.533 1711022.103 0.866251721 0.922035982 1.570440423 1.328618014 2.041899358 0.90531005 1.315773606 1.527065009 0.862474267 1 20.70642697 -7.774762043 24.98849143 0.931236855 1.317208671 0.16325551 0.342361767 487.9682056 915223.5388 0.329874742 0.08718444 1.68E-08 7.774762043 0.385971815 VDNLTYRTS(ph)PDSLRR ddPTM_HeLa_A486_30min_R1 1 VDNLTYRTSPDSLRR 15 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 VDNLTYRT(0.364)S(0.636)PDSLRR 155.49 1.10E-08 264450000 76339 64483 98756 54512 270430 81651 171280 204550 61607 126630 TRUE FALSE FALSE 70988.03031 59373.13224 136996.968 126906.6909 236510.1477 71577.72979 128423.9324 157978.4303 66947.14436 94921.02378 0.747864145 0.625500336 1.443273181 1.336971367 2.491651884 0.754076673 1.352955618 1.664314438 0.705293113 1 16.53444004 -4.761699739 24.99971638 1.387342146 0.68668204 0.224882246 0.482368965 8.835283451 848770.4511 0.122824278 0.284432258 1.73E-05 4.761699739 -0.700660106 VDNLTYRTS(ph)PDTLR ddPTM_HeLa_A485_30min_R1 7 VDNLTYRTSPDTLR 14 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.04)S(0.956)PDT(0.004)LR;VDNLTYRT(0.382)S(0.618)PDTLR;VDNLTYRT(0.118)S(0.882)PDTLR;VDNLTYRT(0.128)S(0.872)PDTLR;VDNLTYRT(0.087)S(0.913)PDTLR;VDNLT(0.023)YRT(0.249)S(0.718)PDT(0.01)LR;VDNLTYRT(0.128)S(0.865)PDT(0.007)LR ;;;;;; 207.56 2.17E-22 33615450000 5401341 6946591 7501017 5887235 11583767 8393541 10996867 11220737 7433981 8733994 TRUE FALSE FALSE 6602850.671 7758934.39 10275955.33 6208839.741 10430446.48 8833013.828 8647296.529 8468833.657 8925912.798 6556770.033 1.007027948 1.183347037 1.567228266 0.946935718 1.590790348 1.347159315 1.318834805 1.291616698 1.36132772 1 22.64455387 -4.523096231 24.99998369 1.317253033 1.05110763 0.175611761 0.195072906 9.457889686 1087363.874 0.045967177 0.124313794 3.00E-05 4.523096231 -0.266145402 VDNLTYRTS(ph)PDTLR ddPTM_HeLa_A486_30min_R1 4 VDNLTYRTSPDTLR 14 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.034)S(0.801)PDT(0.165)LR;VDNLTYRT(0.214)S(0.786)PDTLR;VDNLTYRT(0.081)S(0.919)PDTLR;VDNLTYRT(0.057)S(0.942)PDT(0.001)LR ;;; 213.36 5.73E-23 31353200000 3137710 3601900 3594650 1661270 6158740 3886820 5225700 5636390 3180510 4097900 TRUE FALSE FALSE 2917772.732 3316472.326 4986594.748 3867520.516 5386253.401 3407303.667 3918174.588 4353107.039 3456199.168 3071759.167 0.949870277 1.079665477 1.623367744 1.259057206 1.753475161 1.109235289 1.275547455 1.417138129 1.125153041 1 21.55063368 -7.959664793 5.025763789 1.000934067 1.31595015 0.162558956 0.231091848 0.293558461 16.89346566 0.224823561 0.058622339 1.10E-08 7.959664793 0.315016083 VDNLTYRTS(ph)PDTLRR ddPTM_HeLa_A485_30min_R1 3 VDNLTYRTSPDTLRR 15 2 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.219)S(0.781)PDTLRR;VDNLTYRT(0.004)S(0.996)PDTLRR;VDNLT(0.006)YRT(0.17)S(0.824)PDTLRR ;; 193.85 8.38E-19 8815000000 1461260 2513520 2488450 1393050 3892470 3095120 4200540 5270190 2232620 2253550 TRUE FALSE FALSE 1786312.246 2807454.299 3409031.208 1469148.794 3504922.02 3257175.697 3303060.314 3977667.639 2680686.355 1691781.459 1.055876477 1.659466289 2.015054126 0.868403414 2.071734503 1.925293412 1.952415483 2.35117108 1.584534658 1 20.69011178 -5.829477576 24.99999953 1.894216772 1.462139368 0.15177505 0.447485444 88.59165414 32550.75944 0.133307047 0.151156025 1.48E-06 5.829477576 -0.432077404 VDNLTYRTS(ph)PDTLRR ddPTM_HeLa_A486_30min_R1 4 VDNLTYRTSPDTLRR 15 2 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLTYRT(0.105)S(0.895)PDT(0.001)LRR;VDNLTYRT(0.169)S(0.831)PDTLRR;VDNLTYRT(0.228)S(0.772)PDTLRR;VDNLTYRT(0.042)S(0.957)PDT(0.001)LRR ;;; 202.39 1.07E-25 6807320000 1483460 1475990 1734760 842550 3498580 1671880 2525910 2803440 1213240 1939480 TRUE FALSE FALSE 1379477.115 1359027.177 2406505.53 1961498.98 3059755.473 1465620.444 1893900.602 2165157.911 1318404.62 1453821.584 0.948862728 0.934796396 1.655296329 1.349201994 2.10462928 1.008115755 1.302704969 1.489287224 0.906854482 1 20.4714188 -7.768850041 24.99125038 0.953426978 1.357780963 0.179873306 0.337554835 325.6784718 1098251.189 0.311562249 0.086833785 1.70E-08 7.768850041 0.404353985 VDPSLMEDS(ph)DDGPSLPTK ddPTM_HeLa_A485_30min_R1 4 VDPSLMEDSDDGPSLPTK 18 0 Q5T092;A0A0A0MR06;Q5T091;O15258 Q5T092 RER1 Protein RER1 1 0 VDPSLMEDS(1)DDGPSLPTK;VDPS(0.04)LMEDS(0.96)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK ;;; 195.27 1.06E-18 224317000 261391 229582 225082 476267 279562 275152 326865 268730 246965 691042 TRUE FALSE FALSE 319536.5262 256429.6178 308349.1982 502284.2602 251727.8257 289558.5333 257027.6225 202823.5461 296528.6102 518777.9471 0.615940843 0.494295525 0.594376072 0.968206654 0.485232318 0.558155054 0.495448243 0.390964086 0.571590623 1 18.98475763 -10.52826762 5.186739371 1.001523552 0.573803124 0.434394286 0.145512399 0.002716076 0.000247026 0.149270532 0.036086493 2.96E-11 10.52826762 -0.427720428 VDPSLMEDS(ph)DDGPSLPTK ddPTM_HeLa_A486_30min_R1 3 VDPSLMEDSDDGPSLPTK 18 0 Q5T092;A0A0A0MR06;Q5T091;O15258 Q5T092 RER1 Protein RER1 1 0 VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK;VDPSLMEDS(1)DDGPSLPTK ;; 243.09 1.97E-45 160573000 172461 189751 111204 58332 175730 199176 198577 167228 212711 254972 TRUE FALSE FALSE 160372.3745 174714.4397 154265.1669 135799.8439 153688.3048 174603.6902 148890.9343 129153.835 231148.9607 191125.3516 0.839095249 0.914135347 0.807141311 0.710527634 0.804123072 0.913555887 0.779022422 0.675754597 1.209410258 1 17.54415963 -7.764753673 24.99999945 1.104705179 0.808619071 0.661868783 0.085541777 53.15398743 400913.0924 0.07262057 0.021749784 1.72E-08 7.764753673 -0.296086107 VDS(ph)LVS(ph)LSEEDLESDQR ddPTM_HeLa_A485_30min_R1 1 VDSLVSLSEEDLESDQR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 2 0 VDS(1)LVS(0.997)LS(0.003)EEDLESDQR 110.12 0.00033628 136180000 183110 149420 124810 248650 160230 137770 185020 158030 114260 321830 TRUE FALSE FALSE 223842.1878 166893.3692 170982.4128 262233.1199 144276.9386 144983.4242 145488.9655 119272.8947 137190.9339 241603.7038 0.926484918 0.690773223 0.707697813 1.085385347 0.597163604 0.600087755 0.602180195 0.493671632 0.567834564 1 17.88228305 VDS(ph)LVS(ph)LSEEDLESDQR ddPTM_HeLa_A486_30min_R1 1 VDSLVSLSEEDLESDQR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 2 0 VDS(1)LVS(0.988)LS(0.012)EEDLESDQR 64.275 0.033323 48190000 101840 135030 80048 77005 119010 129350 156830 164560 104850 162700 TRUE FALSE FALSE 94701.5419 124329.731 111044.7294 179271.5316 104082.6561 113392.1121 117589.4752 127093.2803 113938.4824 121958.861 0.776503988 1.019439916 0.910509728 1.469934453 0.853424304 0.929757061 0.964173282 1.0420996 0.934237016 1 16.89603506 VDS(ph)LVSLSEEDLESDQREHR ddPTM_HeLa_A485_30min_R1 2 VDSLVSLSEEDLESDQREHR 20 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDS(0.994)LVS(0.006)LSEEDLESDQREHR;VDS(0.999)LVS(0.001)LSEEDLESDQREHR ; 52.814 0.019427 40320000 9520.9 18223.2 13599.6 13205.2 22992.1 20023.5 23003.2 31835.2 11539.6 18971.1 TRUE FALSE FALSE 11638.79136 20354.24472 18630.65797 13926.56664 20702.92579 21071.8995 18088.3784 24027.56728 13855.49187 14241.95391 0.817218721 1.429175017 1.308153227 0.977855056 1.453657688 1.479565208 1.270077022 1.687097672 0.972864535 1 13.79785947 -4.252553924 24.18497863 1.309741942 0.817218316 0.268258217 0.229644185 934.5929519 2543744.833 0.054564634 0.624946222 5.59E-05 4.252553924 -0.492523626 VDS(ph)LVSLSEEDLESDQREHR ddPTM_HeLa_A486_30min_R1 1 VDSLVSLSEEDLESDQREHR 20 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDS(0.994)LVS(0.006)LSEEDLESDQREHR 46.131 0.03017 17772000 8414.5 7361.1 4597.2 4279.5 9184.2 7025.7 7932.1 9623.8 4781.8 9993 TRUE FALSE FALSE 7824.687003 6777.779627 6377.358957 9962.892274 8032.231997 6158.940566 5947.404683 7432.670826 5196.290274 7490.687756 1.044588595 0.904827413 0.851371618 1.330037054 1.072295663 0.822212962 0.793973114 0.992254793 0.693700024 1 12.87088247 -6.261453371 24.99998302 0.855790658 1.038644288 0.278763295 0.144809029 1.828564864 3263784.892 0.05104525 0.047948342 5.48E-07 6.261453371 0.18285363 VDS(ph)PDVKR ddPTM_HeLa_A485_30min_R1 1 VDSPDVKR 8 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4;K7EPS6 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 VDS(1)PDVKR 90.685 0.0025434 0 296140 222240 186460 552630 356670 260350 390630 340480 269290 746110 TRUE FALSE FALSE 362015.3213 248229.0348 255439.3132 582818.7776 321158.6825 273981.5234 307168.7093 256976.7461 323334.0329 560118.5081 0.646319156 0.443172349 0.456045122 1.040527619 0.573376308 0.489149206 0.548399499 0.458789957 0.577260041 1 19.09537257 -9.929036084 5.117503321 1.000000748 0.579664055 0.36472197 0.165703357 228812062.6 67.93559993 3746.949631 0.041642566 1.18E-10 9.929036084 -0.420336693 VDS(ph)PDVKR ddPTM_HeLa_A486_30min_R1 2 VDSPDVKR 8 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4;K7EPS6 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 VDS(1)PDVKR;VDS(1)PDVKR ; 105.46 0.00084096 420550000 590730 661910 314720 406030 560010 862960 1046430 945660 510270 1172490 TRUE FALSE FALSE 549322.8775 609457.841 436588.0125 945258.3596 489768.3239 756496.7691 784602.146 730353.8616 554500.6144 878890.8724 0.625018298 0.693439721 0.49674883 1.075512773 0.557257265 0.860740273 0.892718505 0.830994933 0.630909515 1 19.74532452 -2.140252777 0.099996869 1.06339557 2.69E-20 0.218884932 0.162791105 162.1160054 1.476649111 2.29445097 23.54265002 0.007240144 2.140252777 -1.06339557 VDS(ph)PSHGLVTSSLCIPSPAR ddPTM_HeLa_A485_30min_R1 4 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 VDS(1)PSHGLVTSSLCIPSPAR;VDS(0.999)PS(0.001)HGLVTSSLCIPSPAR;VDS(0.5)PS(0.5)HGLVTSSLCIPSPAR;VDS(0.993)PS(0.007)HGLVTSSLCIPSPAR ;;; 283.05 7.41E-73 1815810000 833398 814630 847568 1142079 1161149 831773 1096555 982640 806391 1523500 TRUE FALSE FALSE 1018784.51 909893.8922 1161118.673 1204467.884 1045540.929 875323.3481 862267.0662 741645.9993 968226.277 1143719.488 0.890764318 0.795556867 1.015212808 1.053114769 0.914158532 0.765330448 0.753914815 0.648450959 0.84655922 1 20.12530183 -6.212774637 5.240731288 0.777649322 0.938811035 0.259710726 0.10659143 0.248718425 16.0995148 0.036538801 0.036013008 6.13E-07 6.212774637 0.161161713 VDS(ph)PSHGLVTSSLCIPSPAR ddPTM_HeLa_A486_30min_R1 4 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 VDS(0.93)PS(0.07)HGLVTSSLCIPSPAR;VDS(0.994)PS(0.006)HGLVTSSLCIPSPAR;VDS(0.773)PS(0.227)HGLVTSSLCIPSPAR;VDS(0.496)PS(0.496)HGLVT(0.009)SSLCIPSPAR ;;; 296.78 5.41E-87 1324240000 467260 548295 341687 133136 507138 536540 585139 576920 450868 570078 TRUE FALSE FALSE 434507.4869 504846.1073 473997.3571 309947.3363 443528.0232 470347.1499 438731.0332 445567.9101 489949.6013 427326.7582 1.016803836 1.181405324 1.10921525 0.725316939 1.03791306 1.100673293 1.026687482 1.04268666 1.146545569 1 18.70498013 -7.541094038 24.52950587 1.080387247 1.029212257 0.021664874 0.117514822 961.9484325 1295370.761 0.083163665 0.031448035 2.88E-08 7.541094038 -0.05117499 VDS(ph)PTVNTTLR ddPTM_HeLa_A486_30min_R1 2 VDSPTVNTTLR 11 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 VDS(0.791)PT(0.209)VNTTLR;VDS(0.993)PT(0.007)VNTTLR ; 139.74 7.26E-05 422470000 666170 826600 603200 363780 887930 855500 982930 892400 606520 817410 TRUE FALSE FALSE 619474.9231 761097.2056 836775.1943 846898.2244 776557.5398 749957.1081 736990.5176 689220.001 659093.6419 612725.2156 1.01101588 1.242150945 1.36566143 1.382182752 1.267383029 1.223969716 1.202807554 1.124843541 1.075675727 1 19.2248807 -7.481988201 1.084668725 1.008265622 1.263498518 0.449122629 0.094836415 0.477430886 1.017723279 0.093030178 0.033513656 3.30E-08 7.481988201 0.255232896 VDS(ph)PTVTTTLK ddPTM_HeLa_A485_30min_R1 4 VDSPTVTTTLK 11 0 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0 Q07866-4 KLC1 Kinesin light chain 1 1 0 VDS(0.99)PT(0.01)VTTTLK;VDS(0.999)PT(0.001)VTTTLK;VDS(0.997)PT(0.002)VTTTLK;VDS(0.661)PT(0.339)VTTTLK ;;; 236.11 1.14E-21 3411460000 2943180 1913430 1490210 5193060 3133770 2230910 3705040 2953400 2378170 6272100 TRUE FALSE FALSE 3597880.237 2137188.994 2041500.692 5476743.718 2821760.855 2347716.998 2913427.937 2229074.019 2855446.905 4708580.899 0.764111378 0.453892381 0.43357027 1.163141047 0.59928053 0.498603942 0.618748621 0.473406758 0.606434713 1 22.16686089 -11.01310729 2.661037225 1.411993718 0.619829778 0.235009671 0.203708226 37154306.55 15240403.28 93605313.74 0.052868637 9.70E-12 11.01310729 -0.792163939 VDS(ph)PTVTTTLK ddPTM_HeLa_A486_30min_R1 4 VDSPTVTTTLK 11 0 Q07866-4;Q07866-6;Q07866-7;Q07866-9;G3V5R9;H0YG16;Q07866-3;Q07866-8;F8W6L3;G3V3H3;Q07866;Q07866-2;E7EVH7;Q07866-5;Q07866-10;G3V2E7;G5E9S8;H0YJT3;H0YJU9;H0YJL0 Q07866-4 KLC1 Kinesin light chain 1 1 0 VDS(0.999)PT(0.001)VTTTLK;VDS(0.974)PT(0.026)VTTTLK;VDS(0.989)PT(0.011)VTTTLK;VDS(1)PTVTTTLK ;;; 210.79 3.70E-15 4499110000 3975600 4111880 1915780 1905810 3258210 5009700 5865500 5003300 3362880 5712900 TRUE FALSE FALSE 3696930.97 3786039.654 2657621.322 4436821.994 2849534.92 4391654.149 4397889.861 3864157.811 3654377.146 4282352.655 0.863294378 0.884102725 0.620598427 1.036071139 0.665413419 1.025523702 1.026979844 0.902344604 0.853357358 1 22.02997218 -6.28717481 24.921337 0.959621308 0.819400659 0.277865776 0.118902028 1048.733682 1015555.309 0.040529948 0.035755627 5.16E-07 6.28717481 -0.140220649 VDS(ph)TTCLFPVEEK ddPTM_HeLa_A485_30min_R1 7 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 0 VDS(0.994)T(0.006)TCLFPVEEK;VDS(0.974)T(0.006)T(0.019)CLFPVEEK;VDS(0.527)T(0.442)T(0.032)CLFPVEEK;VDS(0.993)T(0.007)TCLFPVEEK;VDS(0.787)T(0.21)T(0.002)CLFPVEEK;VDS(0.967)T(0.032)T(0.001)CLFPVEEK;VDS(0.891)T(0.034)T(0.075)CLFPVEEK ;;;;;; 278.82 1.14E-48 7405300000 7588080 4521465 3817348 12932200 9198980 4919210 11333150 8987020 5564550 14840410 TRUE FALSE FALSE 9276022.217 5050211 5229543.878 13638653.34 8283097.252 5176772.229 8911729.919 6782939.254 6681304.144 11140968.9 0.832604623 0.453300879 0.469397583 1.224189158 0.74348087 0.464660863 0.799906184 0.608828488 0.599705843 1 23.40937137 -11.31333515 2.142556263 2.469479759 0.686823159 0.151045928 0.221550798 17566868.5 2314224.621 124908040.8 0.056747533 4.86E-12 11.31333515 -1.7826566 VDS(ph)TTCLFPVEEK ddPTM_HeLa_A486_30min_R1 4 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 0 VDS(0.98)T(0.02)TCLFPVEEK;VDS(0.619)T(0.19)T(0.19)CLFPVEEK;VDS(0.993)T(0.007)TCLFPVEEK;VDS(0.964)T(0.035)T(0.001)CLFPVEEK ;;; 286.09 3.61E-49 5017540000 4497330 4667490 2048337 3283316 4195250 6364460 8781050 8357000 3572590 7328420 TRUE FALSE FALSE 4182090.391 4297621.094 2841507.943 7643725.578 3669042.626 5579277.634 6583938.414 6454293.532 3882264.978 5493335.932 0.761302502 0.782333567 0.517264551 1.391454241 0.667907929 1.01564472 1.198531911 1.174931519 0.706722659 1 22.38925109 -5.238133535 24.99839191 1.021774845 0.696503559 0.338758342 0.214487003 936.5448379 1004558.615 0.056782893 0.098270107 5.78E-06 5.238133535 -0.325271286 VDSEGDFS(ph)ENDDAAGDFR ddPTM_HeLa_A485_30min_R1 2 VDSEGDFSENDDAAGDFR 18 0 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 1 0 VDSEGDFS(1)ENDDAAGDFR;VDSEGDFS(1)ENDDAAGDFR ; 184.66 7.82E-18 859670000 137860 138296 125892 147603 179862 144005 165684 154101 134494 195437 TRUE FALSE FALSE 168526.4814 154468.5142 172464.6896 155666.1781 161954.3077 151544.8791 130284.2599 116307.4881 161485.7121 146718.1527 1.148640971 1.05282483 1.175482968 1.060987855 1.103846421 1.03289795 0.887990051 0.792727321 1.100652572 1 17.16268785 -6.543097723 3.600061396 0.928861991 1.104974489 0.462852031 0.081687265 0.191727282 5.346606261 0.03140821 0.024781852 2.86E-07 6.543097723 0.176112498 VDSEGDFS(ph)ENDDAAGDFR ddPTM_HeLa_A486_30min_R1 2 VDSEGDFSENDDAAGDFR 18 0 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 1 0 VDSEGDFS(1)ENDDAAGDFR;VDSEGDFS(1)ENDDAAGDFR ; 380.65 1.64E-130 713830000 270530 243550 193980 86160 248430 229330 267010 270190 223654 279810 TRUE FALSE FALSE 251567.244 224250.211 269094.251 200584.8343 217269.5929 201037.5963 200201.2739 208673.6352 243040.5088 209743.7547 1.199402787 1.069162757 1.282966691 0.95633281 1.035881107 0.958491453 0.9545041 0.994897967 1.158749681 1 17.67826833 -5.274931307 24.99946534 1.005014413 1.172375951 0.536563763 0.07444064 589.8675851 1092976.75 0.020582781 0.030721882 5.31E-06 5.274931307 0.167361539 VDSETNIEASKLPT(ph)SEPEADAEIEPK ddPTM_HeLa_A486_30min_R1 1 VDSETNIEASKLPTSEPEADAEIEPK 26 1 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 VDSETNIEASKLPT(0.5)S(0.5)EPEADAEIEPK 158.97 4.72E-10 135210000 132770 119530 35581 85233 103150 183190 224490 214430 84833 273870 TRUE FALSE FALSE 123463.5086 110058.0075 49358.91609 198426.7314 90211.96516 160589.8803 168320.2276 165608.97 92186.39274 205291.1694 0.601406816 0.536106876 0.240433703 0.966562429 0.439434221 0.782254204 0.819909732 0.806702843 0.449051915 1 17.64731205 -5.260791211 24.9998832 0.735001955 0.466994918 0.317625055 0.195378639 74.47319838 2872377.79 0.052118751 0.083821023 5.49E-06 5.260791211 -0.268007037 VDSETNIEASKLPTS(ph)EPEADAEIEPK ddPTM_HeLa_A485_30min_R1 2 VDSETNIEASKLPTSEPEADAEIEPK 26 1 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 VDSETNIEASKLPT(0.183)S(0.817)EPEADAEIEPK;VDSETNIEASKLPT(0.143)S(0.857)EPEADAEIEPK ; 225.53 1.25E-38 209060000 322680 200621 142698 602950 356370 374840 621380 553060 230753 829720 TRUE FALSE FALSE 394459.0528 224081.8808 195487.9284 635887.6317 320888.5515 394466.0428 488617.0868 417421.1678 277063.0105 622886.0739 0.633276404 0.359747778 0.313842188 1.020873091 0.515164113 0.633287626 0.784440538 0.670140472 0.444805274 1 19.24860879 -14 0.11914678 2.176160638 0.419668825 0.258746643 0.199154126 225.4792209 1.742820011 65.4490294 2.015346047 1.00E-14 14 -1.756491813 VDSEVMILMQLNLT(ph)VNS(ph)S(ph)KNFTVLNFK ddPTM_HeLa_A486_30min_R1 1 VDSEVMILMQLNLTVNSSKNFTVLNFK 27 1 H0Y8A4;P34925;P34925-2 H0Y8A4 RYK Tyrosine-protein kinase RYK 3 0 VDS(0.013)EVMILMQLNLT(0.727)VNS(0.777)S(0.777)KNFT(0.707)VLNFK 45.527 0.028433 665990000 262990 330160 535500 14429 698990 146950 114460 247330 248890 41815 TRUE FALSE FALSE 244555.7591 303996.9192 742859.9412 33591.4412 611316.1564 128820.8031 85820.89737 191018.3582 270463.9856 31344.25183 7.802252241 9.698649718 23.70003742 1.071693827 19.50329393 4.10987009 2.738010715 6.094206977 8.628822505 1 14.93591327 -6.31118206 24.99718222 4.721555321 12.21101491 0.292884497 6.085377168 502.9776941 252759.795 2.057626839 1.814658958 4.88E-07 6.31118206 7.489459587 VDSGTEKPGLVAPES(ph)PVRK ddPTM_HeLa_A485_30min_R1 1 VDSGTEKPGLVAPESPVRK 19 2 O15021;H7C1I9;O15021-2;O15021-3;O15021-6 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 1 0 VDSGTEKPGLVAPES(1)PVRK 101.3 8.72E-05 200750000 144120 108390 67480 201480 148260 152060 201170 208600 127740 256900 TRUE FALSE FALSE 176178.9968 121065.2676 92443.66008 212486.3422 133498.7138 160021.6265 158188.3861 157440.5229 153376.2463 192859.5579 0.913509285 0.627737971 0.479331494 1.101767237 0.692206885 0.829731377 0.820225805 0.816348044 0.795274281 1 17.55719112 -14 0.117150174 1.716072094 0.669830402 0.152432873 0.156527477 294.5047212 2.249730879 49.95213888 1.626207823 1.00E-14 14 -1.046241692 VDSGTEKPGLVAPES(ph)PVRK ddPTM_HeLa_A486_30min_R1 1 VDSGTEKPGLVAPESPVRK 19 2 O15021;H7C1I9;O15021-2;O15021-3;O15021-6 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 1 0 VDSGTEKPGLVAPES(1)PVRK 114.57 1.73E-05 212630000 106640 93243 41634 45030 96614 110520 127950 121990 76848 145710 TRUE FALSE FALSE 99165.08669 85854.08509 57755.7998 104832.1157 84495.77123 96885.16609 95935.55668 94215.54002 83509.24652 109223.2676 0.907911738 0.786042086 0.528786595 0.959796553 0.773605964 0.887037792 0.878343587 0.862595875 0.76457378 1 16.7369207 VDSLVS(ph)LSEEDLESDQR ddPTM_HeLa_A485_30min_R1 1 VDSLVSLSEEDLESDQR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDS(0.001)LVS(0.996)LS(0.003)EEDLESDQR 93.51 0.00075106 32964000 10384 10525 9740.3 14475 11487 9962.7 13415 9575.4 10452 16187 TRUE FALSE FALSE 12693.88498 11755.80719 13343.6423 15265.7326 10343.31395 10484.33157 10548.77566 7227.018136 12549.62053 12151.8788 1.044602665 0.967406554 1.098072365 1.256244639 0.85116994 0.862774534 0.868077754 0.594724343 1.032730883 1 13.56889177 -5.804822889 19.46917777 0.847696605 1.083174224 0.411532779 0.129286125 13.67980178 6138.451426 0.03979638 0.045127487 1.57E-06 5.804822889 0.235477619 VDSLVS(ph)LSEEDLESDQR ddPTM_HeLa_A486_30min_R1 2 VDSLVSLSEEDLESDQR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDS(0.001)LVS(0.998)LS(0.001)EEDLESDQR;VDSLVS(1)LSEEDLESDQR ; 229.16 1.41E-34 61556000 41869 54420 42900 16117.7 47436 50774 51298 50192 38432 44498 TRUE FALSE FALSE 38934.19931 50107.56101 59512.0289 37522.82014 41486.13456 44510.02011 38462.69783 38764.37728 41763.3167 33355.41117 1.167252867 1.502231849 1.784179143 1.124939517 1.243760251 1.334416772 1.153117185 1.162161578 1.252070211 1 15.0256332 -5.297861656 24.9998186 1.196035486 1.486322598 0.422294399 0.161807947 557.2797957 382509.054 0.045731592 0.06783319 5.04E-06 5.297861656 0.290287112 VDSLVSLS(ph)EEDLESDQR ddPTM_HeLa_A485_30min_R1 2 VDSLVSLSEEDLESDQR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDSLVSLS(1)EEDLESDQR;VDSLVSLS(1)EEDLESDQR ; 328.8 1.92E-91 385910000 129876 146460 140565 113256 170856 130565 147795 131902 130736 184594 TRUE FALSE FALSE 158766.4681 163587.223 192565.8429 119442.8885 153844.9767 137401.1815 116217.3909 99552.82769 156973.516 138578.113 1.145682133 1.180469408 1.389583382 0.861917412 1.110167929 0.99150709 0.838641748 0.718387814 1.132743928 1 17.08033989 -5.270796005 24.97799445 0.942450093 1.232767422 0.501895124 0.131314661 531.1368316 1417896.727 0.037781896 0.056924916 5.36E-06 5.270796005 0.290317329 VDSLVSLS(ph)EEDLESDQR ddPTM_HeLa_A486_30min_R1 2 VDSLVSLSEEDLESDQR 17 0 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDSLVSLS(1)EEDLESDQR;VDSLVSLS(1)EEDLESDQR ; 398.74 2.54E-136 292130000 122066 149678 89833 47455 114497 113632 114769 125716 119778 152360 TRUE FALSE FALSE 113509.8037 137816.9702 124618.7434 110477.6382 100135.7186 99613.23917 86052.5823 97093.21116 130160.4535 114208.0643 0.993886066 1.206718378 1.091155377 0.967336579 0.876783257 0.872208454 0.753472032 0.850143217 1.139678308 1 16.801305 -5.375096429 2.900438835 0.898526642 1.110867671 0.354695965 0.107841283 0.265415398 4.290085665 0.032535911 0.052365084 4.22E-06 5.375096429 0.212341029 VDSLVSLS(ph)EEDLESDQREHR ddPTM_HeLa_A485_30min_R1 1 VDSLVSLSEEDLESDQREHR 20 1 Q12802-2;Q12802;Q12802-4;A8MYJ1;A0A087WTD7;A0A087WY36;H0YMW2;H0YLH1 Q12802-2 AKAP13 A-kinase anchor protein 13 1 0 VDSLVSLS(1)EEDLESDQREHR 177.03 1.42E-14 100230000 11347 17737 14194 8265 24865 20638 26639 33573 15230 12430 TRUE FALSE FALSE 13871.101 19811.18786 19444.95126 8716.496022 22389.35329 21718.57377 20947.36003 25339.16911 18286.5213 9331.429757 1.48649257 2.123060278 2.083812638 0.934100802 2.39934864 2.327464744 2.244817844 2.715464808 1.959669823 1 13.18788243 VDSPLPSDKAPT(ph)PPGK ddPTM_HeLa_A486_30min_R1 2 VDSPLPSDKAPTPPGK 16 1 Q12893 Q12893 TMEM115 Transmembrane protein 115 1 0 VDSPLPSDKAPT(1)PPGK;VDSPLPSDKAPT(1)PPGK ; 129.15 2.07E-05 576780000 1535880 1472990 535380 781360 994400 2223400 2364200 1742150 1588460 3476000 TRUE FALSE FALSE 1428222.743 1356264.908 742693.474 1819045.568 869673.0796 1949099.514 1772652.154 1345500.476 1726148.992 2605586.975 0.54813858 0.520521833 0.285038834 0.698132738 0.333772424 0.74804623 0.680327378 0.516390544 0.662479897 1 21.31317698 -14 0.144705223 2.622550744 0.396923569 0.533703723 0.134502996 104.5742456 0.912763122 48.47223766 0.736712262 1.00E-14 14 -2.225627175 VDSSTNSS(ph)PSPQQSESLS(ph)PAHTSDFR ddPTM_HeLa_A486_30min_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 2 0 VDS(0.014)S(0.014)T(0.014)NS(0.319)S(0.47)PS(0.171)PQQS(0.027)ES(0.082)LS(0.891)PAHTSDFR 98.147 0.0019658 158050000 102360 128900 134920 17976 181650 89388 104990 112390 132090 61791 TRUE FALSE FALSE 95185.09259 118685.4946 187164.6373 41849.03646 158865.7632 78360.21739 78720.39153 86801.25046 143539.6676 46318.13141 2.055028769 2.562398157 4.040850345 0.903513056 3.42988282 1.691782786 1.69955888 1.874023149 3.098995214 1 15.49928943 -6.320454279 24.99987893 1.916666156 2.582327644 0.136135294 0.909956369 594.7534217 251947.3553 0.310492841 0.273828946 4.78E-07 6.320454279 0.665661488 VDSSTNSSPSPQQSESLS(ph)PAHTSDFR ddPTM_HeLa_A485_30min_R1 2 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 1 0 VDSSTNSSPSPQQSES(0.097)LS(0.903)PAHTSDFR;VDSSTNSSPSPQQSES(0.012)LS(0.988)PAHTSDFR ; 258.11 3.58E-62 1123280000 140987 235882 308885 67723 375998 157481 196553 189813 240482 152239 TRUE FALSE FALSE 172349.0718 263466.348 423154.4153 71422.53601 338562.3189 165726.4616 154557.8459 143261.0641 288744.5316 114288.6191 1.508016049 2.305271953 3.702507028 0.624931306 2.962344997 1.450069683 1.352346779 1.253502451 2.526450437 1 16.80232222 -6.330479344 24.99956593 1.522058765 2.219002425 0.146945527 0.848222111 349.573691 126580.0071 0.29085381 0.256508967 4.67E-07 6.330479344 0.69694366 VDSSTNSSPSPQQSESLS(ph)PAHTSDFR ddPTM_HeLa_A486_30min_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 1 0 VDSSTNSSPSPQQS(0.022)ES(0.199)LS(0.778)PAHT(0.001)SDFR 80.786 0.0051195 390300000 39963 40461 42860 10163 56783 43544 47481 38234 42557 28402 TRUE FALSE FALSE 37161.80007 37254.723 59456.53983 23659.97761 49660.74666 38171.984 35600.7516 29528.95284 46245.87503 21289.95433 1.745508679 1.749873317 2.792703963 1.111321201 2.332590567 1.792957533 1.672185437 1.386989957 2.172192307 1 14.37788523 -11.11856122 0.246381869 1.20E-10 1.98011446 0.242884241 0.452834717 47.68496649 1.669114683 27.9930785 0.706342754 7.61E-12 11.11856122 1.980114459 VDST(ph)TCLFPVEEK ddPTM_HeLa_A485_30min_R1 1 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 0 VDS(0.227)T(0.773)TCLFPVEEK 249.33 7.62E-35 1138500000 1833700 904910 813970 3029200 2108700 1130500 2658100 1972500 1302900 3333400 TRUE FALSE FALSE 2241600.239 1010731.353 1115091.375 3194677.526 1898750.424 1189691.232 2090175.22 1488741.282 1564380.079 2502444.727 0.895764136 0.403897573 0.445600801 1.276622613 0.758758187 0.475411592 0.835253302 0.594914751 0.625140712 1 21.25490677 -11.25963381 2.133643542 2.082373029 0.697780876 0.115852365 0.247414707 24819787.22 3823653.927 129505764.5 0.063262873 5.50E-12 11.25963381 -1.384592153 VDST(ph)TCLFPVEEK ddPTM_HeLa_A486_30min_R1 2 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 0 VDS(0.015)T(0.984)T(0.002)CLFPVEEK;VDS(0.243)T(0.47)T(0.287)CLFPVEEK ; 406.58 7.36E-142 6984500000 4039700 4775300 1998590 2991800 4012200 5942100 8189700 7731500 3059400 6608000 TRUE FALSE FALSE 3756537.891 4396887.837 2772497.572 6965061.597 3508952.464 5209024.117 6140550.438 5971206.227 3324591.255 4953313.789 0.758388838 0.887665919 0.55972581 1.406141806 0.708405042 1.051624092 1.23968533 1.205497265 0.67118527 1 22.23996259 -5.238148027 24.96322227 1.043867897 0.750500793 0.278503851 0.224587367 1065.876889 1142384.686 0.059317807 0.102662016 5.78E-06 5.238148027 -0.293367104 VDTFPQPLAAPQCHTLLAPEMEDNEMS(ph)CSP ddPTM_HeLa_A485_30min_R1 1 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 0 VDTFPQPLAAPQCHTLLAPEMEDNEMS(0.5)CS(0.5)P 42.347 0.0065716 0 25991 24509 20390 23008 41258 22022 29190 33197 20143 35952 TRUE FALSE FALSE 31772.60828 27375.11435 27933.1095 24264.86878 37150.20865 23175.03787 22953.31804 25055.3837 24185.51534 26989.82805 1.177206769 1.014275241 1.034949517 0.899037546 1.376452217 0.858658226 0.850443285 0.928326911 0.896097422 1 14.72012816 VDTFPQPLAAPQCHTLLAPEMEDNEMS(ph)CSP ddPTM_HeLa_A486_30min_R1 1 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 0 VDTFPQPLAAPQCHT(0.001)LLAPEMEDNEMS(0.5)CS(0.5)P 51.025 0.017105 35552000 31488 49879 47988 17706 58497 53356 50316 60150 38681 45810 TRUE FALSE FALSE 29280.8538 45926.40638 66570.23876 41220.46281 51159.7608 46773.4792 37726.40461 46455.15807 42033.90022 34338.87783 0.852702699 1.337446338 1.938625924 1.200402151 1.489849524 1.362114378 1.098649898 1.352844385 1.224090678 1 15.06755527 -6.646310767 7.09148293 1.199068632 1.388956792 0.105465074 0.266873589 0.566448264 32.95727954 0.104651051 0.080683715 2.26E-07 6.646310767 0.18988816 VDTFPQPLAAPQCHTLLAPEMEDNEMSCS(ph)P ddPTM_HeLa_A485_30min_R1 1 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 0 VDTFPQPLAAPQCHTLLAPEMEDNEMS(0.46)CS(0.54)P 69.782 0.0022285 45423000 16627 17759 20141 16044 26978 16902 23325 22438 17436 27107 TRUE FALSE FALSE 20325.61879 19835.76057 27591.99404 16920.44309 24291.97559 17786.96258 18341.4232 16935.04532 20935.24527 20349.72377 0.998815464 0.97474348 1.355890348 0.831482692 1.193725078 0.87406408 0.901310672 0.832200256 1.028772946 1 14.31272159 -6.283324402 24.68678663 0.915159666 1.068115998 0.205099874 0.140348429 1054.216198 1189174.977 0.047370744 0.041814624 5.21E-07 6.283324402 0.152956332 VDTFPQPLAAPQCHTLLAPEMEDNEMSCS(ph)P ddPTM_HeLa_A486_30min_R1 2 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 0 VDTFPQPLAAPQCHTLLAPEMEDNEMS(0.152)CS(0.848)P;VDTFPQPLAAPQCHTLLAPEMEDNEMS(0.122)CS(0.878)P ; 153.06 7.67E-10 206270000 140955 240490 186203 92988 271050 206885 259900 248000 177798 189741 TRUE FALSE FALSE 131074.7824 221432.6966 258305.7883 216480.7634 237052.3816 181361.6322 194870.2711 191535.8138 193209.6738 142228.6186 0.921578116 1.556878628 1.816130894 1.522061913 1.666699599 1.275141627 1.370119973 1.346675625 1.358444424 1 17.11785226 -6.284767308 23.76116374 1.297996239 1.51917328 0.176462393 0.238547161 805.554965 820511.6218 0.085130485 0.075136841 5.19E-07 6.284767308 0.221177042 VDVGKDQEFTVK ddPTM_HeLa_A485_30min_R1 1 VDVGKDQEFTVK 12 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 94.673 0.0056651 32130000 54919 71468 75472 58554 113040 74381 89683 88870 67987 90309 FALSE FALSE TRUE 67135.54208 79825.56091 103392.2335 61752.65675 101785.3407 78275.47415 70521.49441 67074.49316 81631.36729 67796.62831 0.990248981 1.177426708 1.525035035 0.910851443 1.501333373 1.154562935 1.040191764 0.989348509 1.204062345 1 16.04892591 -6.529175266 14.16226361 1.063187939 1.229191024 0.141993758 0.187754491 1.653891439 3695.733832 0.068773674 0.054025391 2.96E-07 6.529175266 0.166003085 VDVKS(ph)PK ddPTM_HeLa_A485_30min_R1 6 VDVKSPK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK ;;;;; 86.624 0.0036807 16369770000 16695060 8903750 5173900 42114500 16430810 11793940 25596900 17985410 9475630 56796800 TRUE FALSE FALSE 20408818.5 9944966.11 7087940.914 44415108.5 14794900.86 12411452.46 20127913.21 13574460 11377302.03 42638403.03 0.478648754 0.233239648 0.166233733 1.041669137 0.346985342 0.291086241 0.472060673 0.318362299 0.266832274 1 25.34565007 -10.02606843 4.51489539 1.000022883 0.403382099 0.371665353 0.233376335 636098545.2 1715684399 249855.3088 0.059087202 9.42E-11 10.02606843 -0.596640783 VDVKS(ph)PK ddPTM_HeLa_A486_30min_R1 7 VDVKSPK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK;VDVKS(1)PK ;;;;;; 98.249 0.0024015 14574810000 10835830 10625460 4229070 13695820 9860870 17838600 25189030 20647980 8670990 26094160 TRUE FALSE FALSE 10076294.27 9783459.852 5866679.162 31884561.11 8624027.736 15637854.9 18886468.27 15946885.7 9422598.395 19560012.49 0.51514764 0.500176565 0.299932281 1.630088995 0.440900932 0.799480824 0.965565246 0.815279934 0.481727627 1 24.22140396 VDVS(ph)CEPLEGVEK ddPTM_HeLa_A485_30min_R1 2 VDVSCEPLEGVEK 13 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 VDVS(1)CEPLEGVEK;VDVS(1)CEPLEGVEK ; 244.44 4.04E-35 444400000 471230 334820 318870 744520 667800 395230 668830 586160 346100 835220 TRUE FALSE FALSE 576053.4878 373974.2865 436833.2823 785191.2424 601311.4872 415923.6317 525929.0067 442403.3409 415559.0954 627015.0251 0.918723579 0.596435925 0.696687104 1.252268623 0.959006504 0.663339179 0.838782143 0.705570558 0.662757795 1 19.25814049 -6.256702896 24.7992777 0.75973136 0.878597597 0.078145923 0.186015896 1052.233394 5509287.135 0.066708228 0.064627933 5.54E-07 6.256702896 0.118866237 VDVS(ph)CEPLEGVEK ddPTM_HeLa_A486_30min_R1 2 VDVSCEPLEGVEK 13 0 Q12888;Q12888-2;Q12888-3;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 VDVS(1)CEPLEGVEK;VDVS(1)CEPLEGVEK ; 222.16 2.08E-27 966180000 565450 817360 428610 341580 774380 872910 1082840 980920 511380 830110 TRUE FALSE FALSE 525814.875 752589.4168 594579.2706 795215.5025 677250.0396 765219.2393 811901.9789 757585.9293 555706.8301 622245.0529 0.845028615 1.209474327 0.955538767 1.277978023 1.088397628 1.229771512 1.30479459 1.217504142 0.893067494 1 19.24712333 -4.253474871 24.34025343 1.143861379 0.845028401 0.281946877 0.135325886 860.8613755 2630780.312 0.032822993 0.344880297 5.58E-05 4.253474871 -0.298832978 VEAEAGGSGART(ph)PPLSR ddPTM_HeLa_A486_30min_R1 2 VEAEAGGSGARTPPLSR 17 1 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 VEAEAGGSGART(1)PPLSR;VEAEAGGS(0.003)GART(0.997)PPLSR ; 166.47 6.86E-12 2918440000 767910 690670 709370 340840 1075760 815390 995180 1024290 675390 993000 TRUE FALSE FALSE 714083.4745 635938.7938 984057.0616 793492.7451 940828.1497 714795.4721 746175.4381 791081.5271 733933.349 744346.3367 0.959343036 0.854358734 1.322041922 1.066026265 1.263965581 0.960299577 1.002457326 1.062786888 0.986010561 1 19.50561452 VEAK(ac)FINYVK ddPTM_HeLa_A485_30min_R1 2 VEAKFINYVK 10 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; VEAK(1)FINYVK;VEAK(1)FINYVK 229.48 1.89E-20 2096300000 1088850 1206990 1041860 1246370 1692560 1213970 1686250 1962510 1274810 1648520 FALSE TRUE FALSE 1331060.926 1348136.981 1427287.369 1314456.037 1524042.783 1277531.592 1325968.912 1481201.345 1530652.674 1237574.303 1.07554021 1.089338214 1.153294284 1.062122924 1.231475783 1.03228678 1.071425699 1.196858518 1.236816788 1 20.23908372 -4.606235655 6.73250834 1.126598444 1.078902923 0.041123777 0.078061839 0.656261805 42.35689734 0.019706837 0.053262488 2.48E-05 4.606235655 -0.047695522 VEAK(ac)FINYVK ddPTM_HeLa_A486_30min_R1 2 VEAKFINYVK 10 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; VEAK(1)FINYVK;VEAK(1)FINYVK 208.66 3.52E-14 2538100000 2416600 2566200 1932730 913480 2875600 2643600 3071600 3019900 2019220 2597200 FALSE TRUE FALSE 2247208.819 2362844.966 2681134.816 2126627.605 2514915.434 2317459.51 2303053.192 2332334.694 2194247.615 1946844.215 1.154282814 1.213679527 1.377169676 1.092346058 1.291790794 1.190367207 1.182967376 1.198007871 1.127079197 1 20.89270601 -8.315128514 0.664203171 0.995967899 1.226728017 0.458050577 0.07228613 1.069203845 0.941949208 0.075460456 0.027874252 4.84E-09 8.315128514 0.230760119 VEAKEES(ph)EES(ph)DEDMGFGLFD ddPTM_HeLa_A485_30min_R1 2 VEAKEESEESDEDMGFGLFD 20 1 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 0 VEAKEES(1)EES(1)DEDMGFGLFD;VEAKEES(1)EES(1)DEDMGFGLFD ; 134.81 3.05E-07 112294000 68217 38891 78512 258798 270670 97528 243759 221597 133720 479570 TRUE FALSE FALSE 83391.6363 43438.96414 107556.856 272935.4794 243721.1444 102634.4153 191677.8983 167249.9883 160556.3774 360022.0248 0.231629263 0.120656408 0.298750767 0.758107728 0.676961762 0.285078157 0.532406034 0.464554879 0.445962653 1 18.45772564 -14 0.090582056 2.674979411 2.40E-14 0.515857009 0.17771259 203.8992826 1.279453579 67.40888626 4.639650744 1.00E-14 14 -2.674979411 VEAKEES(ph)EES(ph)DEDMGFGLFD ddPTM_HeLa_A486_30min_R1 3 VEAKEESEESDEDMGFGLFD 20 1 F8VWS0;P05388-2;P05388;Q8NHW5;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 0 VEAKEES(1)EES(1)DEDMGFGLFD;VEAKEES(1)EES(1)DEDMGFGLFD;VEAKEES(1)EES(1)DEDMGFGLFD ;; 59.372 0.0087946 41309000 41145 64368 45681 101435 108600 101071 147271 153412 60094 103313 TRUE FALSE FALSE 38260.94797 59267.24526 63369.90658 236145.8062 94978.37535 88601.88763 110422.2381 118483.4366 65302.99631 77442.75235 0.494054599 0.765303963 0.818280661 3.049295113 1.226433365 1.144095283 1.425856323 1.529948678 0.843242193 1 16.24084261 -5.026443035 24.93781677 1.494250838 0.670206729 0.272887166 0.576768511 872.7196833 823042.1925 0.157697019 0.274319211 9.41E-06 5.026443035 -0.824044109 VEANS(ph)PLPK ddPTM_HeLa_A485_30min_R1 4 VEANSPLPK 9 0 Q9H7C4-2;Q9H7C4 Q9H7C4-2 SYNC Syncoilin 1 0 VEANS(1)PLPK;VEANS(1)PLPK;VEANS(1)PLPK;VEANS(1)PLPK ;;; 154.36 4.69E-05 2210660000 3046010 2676900 2042790 3767870 3705860 3115360 4692900 4321780 2602640 5468000 TRUE FALSE FALSE 3723584.416 2989940.169 2798503.029 3973699.197 3336891.566 3278475.432 3690223.578 3261856.679 3124965.975 4104928.231 0.907100979 0.728378184 0.681742255 0.968031345 0.812898881 0.798668149 0.898973958 0.794619661 0.761271769 1 21.96892557 -10.21972661 3.690229888 1.000229288 0.815834352 0.308122916 0.082319756 51997317.79 87330496.96 145208.556 0.021191254 6.03E-11 10.21972661 -0.184394936 VEANS(ph)PLPK ddPTM_HeLa_A486_30min_R1 4 VEANSPLPK 9 0 Q9H7C4-2;Q9H7C4 Q9H7C4-2 SYNC Syncoilin 1 0 VEANS(1)PLPK;VEANS(1)PLPK;VEANS(1)PLPK;VEANS(1)PLPK ;;; 162.93 1.19E-05 2127930000 3642690 3963920 2169970 1881710 3963700 4379190 5461100 5067010 2958440 5158380 TRUE FALSE FALSE 3387356.242 3649804.543 3010240.498 4380715.976 3466535.786 3838930.062 4094675.018 3913362.435 3214879.961 3866688.073 0.876035558 0.943909742 0.778506164 1.132937515 0.896512913 0.992821244 1.058961815 1.012070889 0.83142987 1 21.88266696 -5.245785438 24.99968322 0.988940409 0.873926428 0.300439876 0.085831305 1091.180752 1742636.918 0.022630693 0.03902548 5.68E-06 5.245785438 -0.11501398 VEAPSLDVHMDS(ph)PDINIEGPDVK ddPTM_HeLa_A485_30min_R1 4 VEAPSLDVHMDSPDINIEGPDVK 23 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK ;;; 254.71 3.77E-61 1231320000 956260 725850 565397 1146160 1170850 913200 1278370 1156990 798660 1770360 TRUE FALSE FALSE 1168976.738 810731.8434 774560.8784 1208771.819 1054276.063 961013.7399 1005235.806 873236.3884 958943.7363 1329041.833 0.879563539 0.610012283 0.582796462 0.909506224 0.793260255 0.723087653 0.756361298 0.657042063 0.721530137 1 20.34195509 -10.37291224 3.194867175 1.002643854 0.733280764 0.382035934 0.10023935 97833977.51 133664442.4 2414948.817 0.026093452 4.24E-11 10.37291224 -0.26936309 VEAPSLDVHMDS(ph)PDINIEGPDVK ddPTM_HeLa_A486_30min_R1 6 VEAPSLDVHMDSPDINIEGPDVK 23 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPS(0.013)LDVHMDS(0.987)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK ;;;;; 255.63 3.56E-61 2311200000 1711039 1715545 995315 742991 1864402 2017354 2483233 2287583 1386920 2304064 TRUE FALSE FALSE 1591104.002 1579598.966 1380727.623 1729720.597 1630551.316 1768473.374 1861901.838 1766750.288 1507139.342 1727111.377 0.921251532 0.914590099 0.799443303 1.001510742 0.944091584 1.023948656 1.078043873 1.022950987 0.872635872 1 20.71992969 -5.29020486 24.80380546 0.995774191 0.882044486 0.430237933 0.059669884 601.18288 518384.5977 0.017381497 0.02578614 5.13E-06 5.29020486 -0.113729705 VEAPSLDVHMDS(ph)PDINIEGPDVKIPK ddPTM_HeLa_A485_30min_R1 1 VEAPSLDVHMDSPDINIEGPDVKIPK 26 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VEAPSLDVHMDS(1)PDINIEGPDVKIPK 202.3 1.60E-28 65159000 25480 57112 21272 19084 45871 77523 100970 209370 25376 32971 TRUE FALSE FALSE 31147.9381 63790.75159 29141.398 20126.5106 41303.92218 81581.98441 79396.93465 158021.6792 30468.73044 24751.93649 1.258404089 2.57720246 1.177338105 0.813128727 1.668714777 3.29598391 3.207705979 6.384214799 1.230963503 1 14.59525378 -6.250840099 4.55673774 3.385690306 1.486851793 0.197144598 1.454375839 0.266798837 14.98046783 0.490376975 0.464430506 5.61E-07 6.250840099 -1.898838513 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPT(ph)PPGK ddPTM_HeLa_A485_30min_R1 1 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGK 36 2 Q12893 Q12893 TMEM115 Transmembrane protein 115 1 0 VEDQSIWPSMDDDEEESGAKVDSPLPS(0.001)DKAPT(0.999)PPGK 181.76 6.27E-21 182030000 50802 20655 11216 108640 29625 36646 78417 48958 24003 181830 TRUE FALSE FALSE 62102.72964 23070.42258 15365.26514 114574.7281 26675.43098 38564.72789 61662.56734 36950.97374 28820.18193 136503.1273 0.454954629 0.169010213 0.112563466 0.839356067 0.195419926 0.282519006 0.451730071 0.270696902 0.211132027 1 17.05857448 -10.28567211 3.330117075 1.002786997 0.331865957 0.500394333 0.200262576 62645527.5 91118122.36 1760104.183 0.052336275 5.18E-11 10.28567211 -0.67092104 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPT(ph)PPGK ddPTM_HeLa_A486_30min_R1 1 VEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGK 36 2 Q12893 Q12893 TMEM115 Transmembrane protein 115 1 0 VEDQSIWPSMDDDEEESGAKVDSPLPS(0.001)DKAPT(0.999)PPGK 196.92 8.47E-24 128960000 105560 67666 24666 80358 74058 129790 206730 159290 81163 312380 TRUE FALSE FALSE 98160.78911 62303.89972 34217.33578 187077.4851 64768.95508 113777.8294 155003.9674 123023.1443 88198.27419 234158.0147 0.419207471 0.266076307 0.146129253 0.798936928 0.276603622 0.485901922 0.661963109 0.525385152 0.376661351 1 17.83712289 -14 0.13975594 2.886432671 0.24435262 0.483919384 0.178565622 120.7504927 1.033386009 63.65598378 1.10824001 1.00E-14 14 -2.642080051 VEEAS(ph)PGRPSSVDTLLSPTALIDSILR ddPTM_HeLa_A485_30min_R1 1 VEEASPGRPSSVDTLLSPTALIDSILR 27 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 VEEAS(1)PGRPSSVDTLLSPTALIDSILR 226.74 9.07E-39 5740700000 952350 864940 986750 736080 1440900 1029800 1196000 1399500 884630 1059400 TRUE FALSE FALSE 1164196.972 966087.209 1351789.887 776290.1865 1297438.937 1083718.736 940464.8296 1056270.431 1062167.127 795311.0768 1.463825924 1.214728723 1.69969956 0.97608371 1.631360325 1.362635033 1.182511921 1.328122368 1.335536695 1 19.60115974 -12.95049511 0.19666075 7.46E-10 1.418939409 0.239954898 0.197765115 126.2795111 1.806385461 50.46517409 0.482096584 1.12E-13 12.95049511 1.418939409 VEEAS(ph)PGRPSSVDTLLSPTALIDSILR ddPTM_HeLa_A486_30min_R1 3 VEEASPGRPSSVDTLLSPTALIDSILR 27 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 VEEAS(0.982)PGRPS(0.009)S(0.009)VDTLLSPTALIDSILR;VEEAS(0.994)PGRPS(0.003)S(0.003)VDTLLSPTALIDSILR;VEEAS(0.852)PGRPS(0.065)S(0.065)VDT(0.019)LLSPTALIDSILR ;; 137.47 1.07E-06 4549982000 36831.5 48118 40078.4 16592.9 53026 39764 50391 52118 40003.1 48986.6 TRUE FALSE FALSE 34249.80205 44304.95444 55597.82982 38629.10976 46374.98463 34858.32197 37782.63882 40251.86913 43470.60092 36720.03651 0.932727887 1.20656074 1.514100614 1.051989961 1.262934056 0.949299763 1.028937943 1.09618271 1.183838717 1 15.16427987 -6.249597853 24.84595975 1.056243625 1.204310617 0.178083444 0.151522924 1265.378639 2655025.479 0.051283715 0.050889675 5.63E-07 6.249597853 0.148066992 VEEASPGRPSS(ph)VDT(ph)LLSPTALIDSILR ddPTM_HeLa_A486_30min_R1 1 VEEASPGRPSSVDTLLSPTALIDSILR 27 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 VEEAS(0.263)PGRPS(0.425)S(0.468)VDT(0.543)LLS(0.251)PT(0.05)ALIDSILR 105.08 0.00046915 211990000 89078 101570 79427 42346 109820 95610 103940 110290 78975 95570 TRUE FALSE FALSE 82834.0922 93521.22329 110183.2615 98583.62805 96045.35157 83814.61029 77933.11263 85179.37461 85820.61659 71638.64994 1.156276567 1.305457646 1.538042127 1.376123477 1.340691814 1.169963565 1.087864061 1.189014236 1.197965297 1 16.12845053 -6.291432674 3.716804262 1.134003223 1.35586641 0.527463771 0.101648741 0.204106433 6.125207686 0.038627779 0.035163263 5.11E-07 6.291432674 0.221863186 VEECHHGRT(ph)PTCSR ddPTM_HeLa_A485_30min_R1 1 VEECHHGRTPTCSR 14 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 VEECHHGRT(1)PTCSR 120.24 9.44E-05 133200000 55923 64983 69051 58514 98325 64280 75868 85187 64750 77450 TRUE FALSE FALSE 68362.87842 72582.19657 94595.83835 61710.47165 88535.41776 67645.6014 59658.18202 64294.75468 77744.73108 58143.14036 1.175768594 1.248336366 1.626947526 1.061354293 1.522714756 1.163432195 1.026057101 1.105801205 1.337126454 1 15.82732137 -6.498546862 24.26804633 1.121588893 1.326407516 0.254988532 0.172776475 741.1815858 739238.6947 0.059068323 0.051800832 3.17E-07 6.498546862 0.204818623 VEECHHGRT(ph)PTCSR ddPTM_HeLa_A486_30min_R1 2 VEECHHGRTPTCSR 14 1 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 VEECHHGRT(1)PTCSR;VEECHHGRT(1)PTCSR ; 164.53 7.32E-12 216640000 148186 166176 154330 46942 217211 147367 174171 170261 136463 155761 TRUE FALSE FALSE 137798.9266 153007.6086 214090.7091 109283.3483 189966.371 129186.3579 130591.5736 131496.2871 148291.7227 116757.4318 1.180215465 1.310474256 1.833636676 0.935986229 1.627017382 1.106450835 1.118486178 1.126234836 1.270083801 1 16.83315486 -6.32052271 24.99809925 1.13178029 1.374561145 0.226577613 0.233677749 414.8424161 175518.1035 0.079243014 0.069885786 4.78E-07 6.32052271 0.242780855 VEEEEER ddPTM_HeLa_A485_30min_R1 1 VEEEEER 7 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 143.94 0.0035343 17938000 19905 26994 21605 22501 26988 22970 28045 32678 27919 35239 FALSE FALSE TRUE 24332.79858 30150.71348 29597.58856 23730.17265 24300.97996 24172.67368 22052.95664 24663.66926 33522.08721 26454.56583 0.919795802 1.139716814 1.118808328 0.897016145 0.918593037 0.913742975 0.833616276 0.932302931 1.26715696 1 14.69122912 -5.259849486 24.99451219 0.953564175 1.067467965 0.101319444 0.122884276 281.2295192 4421140.228 0.034517541 0.055987707 5.50E-06 5.259849486 0.11390379 VEEEERDPQS(ph)PEFEIEEEEEMLSSVIPDSR ddPTM_HeLa_A485_30min_R1 2 VEEEERDPQSPEFEIEEEEEMLSSVIPDSR 30 1 A0A087WZP0;E9PLV2;Q8NCY6 A0A087WZP0 MSANTD4 Myb/SANT-like DNA-binding domain-containing protein 4 1 0 VEEEERDPQS(1)PEFEIEEEEEMLSSVIPDSR;VEEEERDPQS(1)PEFEIEEEEEMLSSVIPDSR ; 102.94 0.00011913 106794000 21861.7 30954 25685.9 27143 30580 23093.9 29202 31307 23451.1 32182 TRUE FALSE FALSE 26724.75974 34573.80104 35188.18329 28625.75336 27535.34783 24303.06089 22962.75414 23628.90916 28157.52066 24159.61967 1.106174688 1.431057339 1.456487469 1.184859437 1.139726047 1.00593723 0.950460084 0.97803316 1.16547864 1 14.56031012 -5.747058243 1.990232304 1.018131163 1.337157479 0.602566377 0.107057459 0.21256178 1.733517415 0.037027828 0.048677264 1.79E-06 5.747058243 0.319026316 VEEEERDPQS(ph)PEFEIEEEEEMLSSVIPDSR ddPTM_HeLa_A486_30min_R1 1 VEEEERDPQSPEFEIEEEEEMLSSVIPDSR 30 1 A0A087WZP0;E9PLV2;Q8NCY6 A0A087WZP0 MSANTD4 Myb/SANT-like DNA-binding domain-containing protein 4 1 0 VEEEERDPQS(0.944)PEFEIEEEEEMLS(0.041)S(0.014)VIPDS(0.001)R 48.096 0.018454 43712000 18320 20768 13821 6874.5 22467 23556 20176 20024 19160 24982 TRUE FALSE FALSE 17035.8626 19122.26804 19172.86134 16004.18342 19648.97936 20649.90022 15127.7514 15464.97232 20820.80423 18726.34459 0.90972707 1.021142591 1.023844309 0.854634675 1.049269347 1.102719226 0.807832587 0.825840422 1.111845621 1 14.19278169 -7.793153252 24.99953402 1.055922741 0.954815634 0.156632655 0.09824654 470.2823443 370704.301 0.098236356 0.025373647 1.61E-08 7.793153252 -0.101107107 VEEEKRGS(ph)VSR ddPTM_HeLa_A485_30min_R1 2 VEEEKRGSVSR 11 2 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 VEEEKRGS(0.988)VS(0.012)R;VEEEKRGS(0.997)VS(0.003)R ; 150.12 2.92E-07 1169560000 190229 322780 213310 161359 447820 517840 781340 1335350 230670 297310 TRUE FALSE FALSE 232544.7848 360526.3132 292222.2456 170173.6336 403233.4684 544953.3017 614400.326 1007853.319 276963.3532 223196.0886 1.041885574 1.615289567 1.309262395 0.762440035 1.806633221 2.441589838 2.752737872 4.51555099 1.240896984 1 17.76795222 -6.143174522 2.743995935 2.651174883 1.224552684 0.248911229 0.931351102 0.327666766 4.786445604 0.324601439 0.324411895 7.19E-07 6.143174522 -1.426622199 VEEEKRGS(ph)VSR ddPTM_HeLa_A486_30min_R1 1 VEEEKRGSVSR 11 2 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 VEEEKRGS(1)VSR 141.65 5.14E-07 539020000 119600 88677 60619 79049 183150 95216 185000 191470 64944 188010 TRUE FALSE FALSE 111216.6576 81649.91156 84092.30023 184030.0669 160177.6192 83469.21801 138711.0433 147876.4608 70573.39821 140931.0723 0.7891564 0.579360607 0.596690984 1.305816127 1.136567094 0.5922698 0.984247413 1.049282166 0.500765353 1 17.1046302 VEEEKRGSVS(ph)R ddPTM_HeLa_A486_30min_R1 1 VEEEKRGSVSR 11 2 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 VEEEKRGS(0.371)VS(0.629)R 81.904 0.0042077 398940000 220470 158520 135040 132810 357660 186360 337800 366600 138130 335250 TRUE FALSE FALSE 205016.1915 145958.2979 187331.1045 309188.3918 312798.9478 163368.798 253278.8671 283133.1828 150103.2196 251301.2179 0.815818535 0.580810149 0.745444475 1.230349755 1.244717198 0.650091549 1.007869636 1.126668566 0.597303988 1 17.93905814 -5.027529564 22.86203474 0.983697915 0.68951754 0.253931453 0.209432936 309.0323773 256638.2069 0.057214822 0.099551786 9.39E-06 5.027529564 -0.294180376 VEEEQEADEEDVS(ph)EEEAESKEGTNKDFPQNAIR ddPTM_HeLa_A485_30min_R1 1 VEEEQEADEEDVSEEEAESKEGTNKDFPQNAIR 33 2 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 VEEEQEADEEDVS(1)EEEAESKEGTNKDFPQNAIR 278.58 3.62E-78 325750000 76930 49391 22159 74658 56749 91773 152350 283530 49588 224520 TRUE FALSE FALSE 94042.81309 55166.84781 30356.53621 78736.3775 51098.8703 96578.09237 119799.1779 213993.8229 59539.85675 168551.296 0.557947731 0.327300051 0.180102657 0.467135996 0.303165099 0.572989319 0.710757976 1.269606512 0.353244728 1 17.36282819 -6.665989228 2.321391446 0.871904436 0.362114741 0.471596397 0.23372574 0.246819863 2.713054592 0.101062631 0.071157105 2.16E-07 6.665989228 -0.509789695 VEEEQEADEEDVS(ph)EEEAESKEGTNKDFPQNAIR ddPTM_HeLa_A486_30min_R1 1 VEEEQEADEEDVSEEEAESKEGTNKDFPQNAIR 33 2 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 VEEEQEADEEDVS(1)EEEAESKEGTNKDFPQNAIR 144.43 9.68E-10 193580000 69202 44400 25478 32669 70851 60275 96890 78556 41387 108390 TRUE FALSE FALSE 64351.29716 40881.5823 35343.76392 76055.083 61964.20692 52838.88333 72647.0972 60670.51367 44974.45848 81248.4385 0.792031187 0.503167606 0.435008532 0.93608055 0.76265105 0.650337216 0.894135303 0.746728365 0.553542435 1 16.31005247 -5.257568724 24.99518738 0.778511528 0.569378965 0.296303068 0.150853861 435.296929 2810967.344 0.040838146 0.067444772 5.53E-06 5.257568724 -0.209132563 VEEGGRHPS(ph)PCQFTIATPK ddPTM_HeLa_A485_30min_R1 2 VEEGGRHPSPCQFTIATPK 19 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 VEEGGRHPS(0.999)PCQFT(0.001)IATPK;VEEGGRHPS(0.978)PCQFT(0.022)IATPK ; 123.14 3.77E-06 1423510000 636480 707040 538350 696720 858010 771320 906450 1000500 549890 823430 TRUE FALSE FALSE 778062.7802 789722.1776 737508.0676 734780.0494 772583.5117 811705.1225 712779.5525 755125.8063 660247.8791 618164.0551 1.258667135 1.277528467 1.193062038 1.188648941 1.249803358 1.313090135 1.153058879 1.22156214 1.06807873 1 19.23763024 -7.85517111 1.628075345 0.996111954 1.237231234 0.764153774 0.044611691 0.16921131 0.954508127 0.042996296 0.012718533 1.40E-08 7.85517111 0.241119281 VEEGGRHPS(ph)PCQFTIATPK ddPTM_HeLa_A486_30min_R1 1 VEEGGRHPSPCQFTIATPK 19 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 VEEGGRHPS(1)PCQFTIATPK 186.92 1.46E-18 349430000 200390 216780 131750 101690 227040 218110 276270 251390 183700 288100 TRUE FALSE FALSE 186343.6958 199601.5633 182767.1284 236739.4591 198562.5261 191201.8058 207144.3239 194153.9848 199623.2639 215957.8848 0.862870536 0.924261522 0.846309124 1.096229755 0.919450227 0.885366172 0.95918852 0.899036333 0.924362007 1 17.72039047 VEELARSLRADIER ddPTM_HeLa_A485_30min_R1 1 VEELARSLRADIER 14 2 Q9BX97 Q9BX97 PLVAP Plasmalemma vesicle-associated protein 0 0 85.457 0.0015458 98168000 58752 44091 26183 71877 47846 68932 87172 93633 48150 98303 FALSE FALSE TRUE 71821.17971 49247.05891 35869.18127 75803.45851 43082.28424 72541.17293 68546.99007 70669.35994 57813.26334 73797.87123 0.973214789 0.66732357 0.486046287 1.027176763 0.583787629 0.982971077 0.928847796 0.957607025 0.783400149 1 16.17129158 -6.284196926 24.83150067 0.927808318 0.744066298 0.242900083 0.161496425 1098.59374 1198707.355 0.055573673 0.049045122 5.20E-07 6.284196926 -0.18374202 VEELARSLRADIER ddPTM_HeLa_A486_30min_R1 1 VEELARSLRADIER 14 2 Q9BX97 Q9BX97 PLVAP Plasmalemma vesicle-associated protein 0 0 67.275 0.0097353 47265000 96599 96804 48741 54373 99830 112200 131260 130230 69977 161860 FALSE FALSE TRUE 89827.90894 89132.89849 67614.82053 126583.0919 87308.39052 98357.90477 98417.35967 100579.4719 76042.6627 121329.2025 0.740365115 0.734636812 0.557283977 1.04330276 0.719599146 0.810669672 0.811159702 0.828979915 0.62674658 1 16.88856731 -11.31054039 2.413686006 2.301429015 0.768348913 0.248075749 0.123205242 16828976.35 2607719.326 119507391.3 0.029881406 4.89E-12 11.31054039 -1.533080103 VEENPDADS(ph)DFDAK ddPTM_HeLa_A485_30min_R1 2 VEENPDADSDFDAK 14 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VEENPDADS(1)DFDAK;VEENPDADS(1)DFDAK ; 301.33 3.04E-58 877270000 857040 576150 454220 1363670 783680 766800 1112100 814320 612710 1636620 TRUE FALSE FALSE 1047685.591 643525.7307 622254.8797 1438163.839 705654.0675 806948.4623 874490.75 614606.7432 735675.2769 1228640.754 0.852719225 0.523770458 0.506457952 1.170532423 0.574337181 0.656781455 0.711754634 0.500233076 0.598771671 1 20.22863171 VEENPDADS(ph)DFDAK ddPTM_HeLa_A486_30min_R1 2 VEENPDADSDFDAK 14 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VEENPDADS(1)DFDAK;VEENPDADS(1)DFDAK ; 328.31 3.83E-81 503430000 999470 996720 383780 531350 721100 1129270 1271090 1119450 783090 1734600 TRUE FALSE FALSE 929412.3143 917736.2772 532389.894 1237009.653 630652.914 989952.149 953049.8378 864575.6724 850968.8717 1300244.87 0.714797909 0.705818034 0.409453562 0.951366686 0.485026266 0.761358243 0.732977195 0.664932962 0.654468163 1 20.31035191 -13.99999995 0.438025466 7.77481855 0.670687379 0.32385864 0.140410096 1334.633394 8.14028425 8742.812994 0.073680954 1.00E-14 13.99999995 -7.104131171 VEENPDADS(ph)DFDAKS(ph)S(ph)ADDEIEETR ddPTM_HeLa_A485_30min_R1 2 VEENPDADSDFDAKSSADDEIEETR 25 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 3 0 VEENPDADS(1)DFDAKS(1)S(1)ADDEIEET(0.001)R;VEENPDADS(1)DFDAKS(1)S(1)ADDEIEETR ; 107.04 0.00082915 868850000 658690 540160 342010 1256070 697610 577320 966830 752040 441530 1477360 TRUE FALSE FALSE 805213.318 603327.0132 468533.7312 1324685.924 628153.4989 607547.5825 760258.8722 567601.0108 530141.021 1109081.341 0.726018272 0.543988066 0.422452091 1.194399252 0.566372795 0.54779353 0.685485225 0.511775818 0.478000126 1 20.08093375 VEEPSQCLASGTAISELIIEDNNAS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 VEEPSQCLASGTAISELIIEDNNASPQK 28 0 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 VEEPSQCLASGTAISELIIEDNNAS(1)PQK;VEEPSQCLASGTAISELIIEDNNAS(1)PQK ; 179.78 2.47E-20 89917000 128031 119624 62105 73063 85182 126703 139571 124451 103878 148631 TRUE FALSE FALSE 119056.6881 110144.5586 86153.71923 170094.3564 74497.67927 111071.6721 104648.8596 96116.22405 112882.2287 111412.8302 1.068608417 0.988616467 0.773283643 1.526703488 0.668663377 0.996937892 0.939289123 0.86270337 1.013188773 1 16.76555586 VEEPSQCLASGTAISELIIEDNNAS(ph)PQKLR ddPTM_HeLa_A485_30min_R1 3 VEEPSQCLASGTAISELIIEDNNASPQKLR 30 1 Q5UIP0;Q5UIP0-2;H7C2B5 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 VEEPSQCLASGTAISELIIEDNNAS(1)PQKLR;VEEPSQCLASGTAISELIIEDNNAS(1)PQKLR;VEEPSQCLASGTAISELIIEDNNAS(1)PQKLR ;; 248.08 5.78E-51 683916000 136978 169511 96245 173645 187898 154157 262707 307638 141026 244126 TRUE FALSE FALSE 167448.2835 189333.8369 131850.0306 183130.7867 169190.2154 162228.4221 206577.5033 232189.2981 169328.6246 183269.881 0.913670498 1.033087575 0.719430983 0.999241041 0.923175234 0.88518867 1.127176502 1.266925568 0.923930455 1 17.48361018 -6.761966376 24.99998654 1.101751955 0.913468935 0.333529677 0.114067052 14.68154587 696403.2275 0.044280255 0.03191464 1.73E-07 6.761966376 -0.18828302 VEESSEIS(ph)PEPK ddPTM_HeLa_A485_30min_R1 2 VEESSEISPEPK 12 0 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 VEESSEIS(1)PEPK;VEES(0.079)S(0.047)EIS(0.874)PEPK ; 129.77 3.07E-05 568170000 407170 331540 234161 528060 338420 371680 520090 508270 266540 585350 TRUE FALSE FALSE 497743.5618 370310.719 320786.8982 556906.5807 304725.7165 391140.5901 408968.5228 383615.9856 320032.1332 439433.0176 1.132694954 0.842701172 0.73000181 1.267329851 0.693452026 0.89010287 0.930673177 0.872979431 0.728284222 1 18.74528375 VEESSEIS(ph)PEPK ddPTM_HeLa_A486_30min_R1 2 VEESSEISPEPK 12 0 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 VEESSEIS(1)PEPK;VEESSEIS(1)PEPK ; 192.4 2.78E-15 352900000 942860 922580 367330 427740 602470 1004660 1124540 881970 738060 1569850 TRUE FALSE FALSE 876770.3829 849471.4008 509570.0134 995800.3368 526902.5948 880715.2638 843168.1978 681164.6843 802035.6351 1176749.342 0.745078286 0.721879648 0.433031909 0.84622978 0.447761113 0.748430641 0.716523195 0.578852828 0.681568798 1 20.16637562 -8.047882808 21.77357516 1.000000002 0.652738755 0.399050499 0.126379304 2341.840397 1064896.231 0.114013045 0.029438042 8.96E-09 8.047882808 -0.347261246 VEET(ph)SPLGNAR ddPTM_HeLa_A485_30min_R1 1 VEETSPLGNAR 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 VEET(0.646)S(0.354)PLGNAR 157.47 1.08E-06 365960000 333810 455420 352700 343580 358500 318730 364840 339830 343250 392840 TRUE FALSE FALSE 408064.8829 508677.4074 483178.4071 362348.9054 322806.4812 335418.2099 286888.9535 256486.1597 412137.1265 294912.2177 1.383682528 1.724843451 1.638380434 1.228666985 1.094584971 1.137349319 0.972794399 0.869703404 1.397490853 1 18.16992607 -5.414815185 3.060894784 1.072055985 1.597790542 0.683528178 0.152714849 0.142418697 2.542681475 0.044832796 0.069701071 3.85E-06 5.414815185 0.525734557 VEET(ph)SPLGNAR ddPTM_HeLa_A486_30min_R1 3 VEETSPLGNAR 11 0 P30414;A0A087WYW3 P30414 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 VEET(0.5)S(0.5)PLGNAR;VEET(0.646)S(0.354)PLGNAR;VEET(0.5)S(0.5)PLGNAR ;; 162.38 1.10E-06 363820000 2801900 2923390 1747500 713780 2140490 2357070 2413510 2201950 2086190 3089240 TRUE FALSE FALSE 2605501.279 2691729.93 2424178.8 1661715.912 1872009.785 2066278.668 1809624.27 1700614.053 2267022.629 2315674.196 1.125158834 1.162395787 1.046856593 0.717594865 0.808408103 0.892301115 0.781467563 0.734392626 0.978990323 1 21.14300086 -5.078501132 4.740885688 0.832321714 1.13694091 0.656567782 0.089726138 0.116281187 4.699085725 0.023726662 0.04343722 8.35E-06 5.078501132 0.304619195 VEETVKHDWDR ddPTM_HeLa_A485_30min_R1 5 VEETVKHDWDR 11 1 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9;A0A0B4J225 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;;;; ;;;; 225.13 1.67E-17 4044914000 1250684 1360532 1029863 1337836 1822896 1591375 2230297 2563223 1259339 1948376 FALSE FALSE TRUE 1528894.341 1519634.382 1410852.18 1410918.593 1641402.074 1674696.934 1753775.826 1934588.54 1512076.786 1462681.72 1.045267962 1.038937153 0.964565401 0.964610806 1.122186769 1.144949657 1.199013977 1.322631242 1.033770208 1 20.48018444 -5.895234186 4.481118239 1.161183362 1.003625143 0.347996913 0.087330761 0.213681514 7.474669757 0.027405852 0.031368591 1.27E-06 5.895234186 -0.157558219 VEETVKHDWDR ddPTM_HeLa_A486_30min_R1 4 VEETVKHDWDR 11 1 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;Q16881-7;E2QRB9;A0A0B4J225 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;;; ;;; 238.87 3.25E-21 3018080000 2267860 2113560 1304080 974230 2404380 2224290 2884110 2841320 1527420 2815120 FALSE FALSE TRUE 2108894.725 1946073.808 1809054.7 2268056.675 2102800.24 1949879.715 2162475.173 2194413.462 1659817.995 2110195.629 0.999383515 0.922224358 0.857292412 1.074808726 0.996495402 0.924027938 1.024774738 1.039909965 0.786570673 1 21.00894532 -5.243202279 24.82860175 0.98020711 0.925892541 0.078280172 0.081196534 2038.602163 2775417.709 0.021726279 0.037524823 5.71E-06 5.243202279 -0.054314569 VEEVEDVS(ph)PGPWGLVK ddPTM_HeLa_A485_30min_R1 2 VEEVEDVSPGPWGLVK 16 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 VEEVEDVS(1)PGPWGLVK;VEEVEDVS(1)PGPWGLVK ; 153.94 3.17E-08 47856000 98072 94971 84092 97756 81346 88904 93587 75950 79080 111451 TRUE FALSE FALSE 119887.7781 106077.0323 115201.1302 103096.1627 73246.90662 93558.87597 73591.37291 57323.14342 94950.63064 83668.3168 1.432893389 1.267827971 1.376878782 1.23220075 0.875443769 1.118211523 0.879560815 0.68512366 1.134845713 1 16.35239379 -5.631498693 3.921955737 0.938151532 1.345301464 0.683982856 0.127673265 0.129388736 3.708376809 0.038756496 0.051005009 2.34E-06 5.631498693 0.407149932 VEEVEDVS(ph)PGPWGLVK ddPTM_HeLa_A486_30min_R1 5 VEEVEDVSPGPWGLVK 16 0 O15061;H0YL34;A0A075B7B1;O15061-2 O15061 SYNM Synemin 1 0 VEEVEDVS(1)PGPWGLVK;VEEVEDVS(1)PGPWGLVK;VEEVEDVS(1)PGPWGLVK;VEEVEDVS(1)PGPWGLVK;VEEVEDVS(1)PGPWGLVK ;;;; 248.97 1.89E-43 112711000 329711 365242 167524 104553 233982 324885 314894 286140 302822 474620 TRUE FALSE FALSE 306599.9615 336298.8937 232393.7792 243404.6678 204633.7958 284803.9919 236104.1906 220992.1684 329070.8548 355772.0627 0.861787627 0.945265042 0.653209747 0.684159026 0.575182307 0.800523767 0.663638929 0.621162231 0.924948553 1 18.4405937 -7.914686799 5.515070329 0.997954 0.725213539 0.440299341 0.10823945 0.182588248 8.246967699 0.111868617 0.029112298 1.22E-08 7.914686799 -0.272740461 VEGDLKGPEVDLKGPK ddPTM_HeLa_A485_30min_R1 1 VEGDLKGPEVDLKGPK 16 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 69.594 0.022337 8655600 13233 12396 11265 16909 21906 17999 25719 26648 13671 28399 FALSE FALSE TRUE 16176.6352 13845.60437 15432.39228 17832.69585 19724.96172 18941.39981 20223.92555 20112.53622 16414.6443 21319.65194 0.758766383 0.649429194 0.723857609 0.836444042 0.925200926 0.888447891 0.948604865 0.943380139 0.76993022 1 14.37989627 -5.385467293 2.492982346 0.910156127 0.699938311 0.684831429 0.061195641 0.159728558 1.933074744 0.017941857 0.029633278 4.12E-06 5.385467293 -0.210217816 VEGIYTYSLS(ph)PSK ddPTM_HeLa_A486_30min_R1 1 VEGIYTYSLSPSK 13 0 O95197-7;O95197-2;O95197 O95197-7 RTN3 Reticulon-3 1 0 VEGIYTYS(0.01)LS(0.988)PS(0.002)K 158.31 1.02E-08 60976000 97965 107420 46206 35046 74280 106150 106890 92375 79636 108500 TRUE FALSE FALSE 91098.15939 98907.64798 64098.20064 81588.85913 64963.10977 93054.29225 80144.99143 71343.22903 86538.9126 81330.89378 1.120092933 1.216114116 0.78811627 1.0031718 0.798750718 1.144144469 0.985418796 0.87719716 1.064034939 1 16.31151585 -4.738875537 24.99983953 0.956828015 1.168103664 0.37969705 0.107616482 234.3251337 259618.9335 0.026289798 0.069447611 1.82E-05 4.738875537 0.211275648 VEGNFNPFAS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 VEGNFNPFASPQK 13 0 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 0 VEGNFNPFAS(1)PQK;VEGNFNPFAS(1)PQK ; 155.22 2.97E-08 337740000 411960 398890 316220 544760 487810 401170 596490 492690 356580 706360 TRUE FALSE FALSE 503599.0808 445536.7156 433202.937 574518.8594 439241.9236 422174.6409 469045.0386 371857.005 428142.3353 530277.4516 0.949689788 0.840195476 0.816936371 1.083430679 0.828324724 0.796139152 0.884527594 0.701249891 0.807393062 1 19.01638788 -5.957078285 24.99999428 0.821008779 0.914977776 0.145111564 0.097981829 247.9224768 144402.7195 0.029877212 0.033877556 1.10E-06 5.957078285 0.093968997 VEGNFNPFAS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 VEGNFNPFASPQK 13 0 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 0 VEGNFNPFAS(1)PQK;VEGNFNPFAS(1)PQK ; 146.3 5.82E-06 215770000 546620 599190 334670 250861 559460 611740 756140 659580 473850 744160 TRUE FALSE FALSE 508304.7607 551708.0022 464263.1868 584017.0858 489287.31 536269.7385 566945.7744 509408.0325 514923.6995 557817.4923 0.911238474 0.989047511 0.832285099 1.046968039 0.877145871 0.961371319 1.016364281 0.913216311 0.923104253 1 19.08943365 -5.258785271 24.99996545 0.957608664 0.918676087 0.129594157 0.059459954 620.0930394 5840820.519 0.015787005 0.025855177 5.51E-06 5.258785271 -0.038932578 VEGVHT(ph)PR ddPTM_HeLa_A485_30min_R1 2 VEGVHTPR 8 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 VEGVHT(1)PR;VEGVHT(1)PR ; 122.51 0.0008385 520840000 602130 773080 777350 570870 755670 614320 662400 646260 609290 786410 TRUE FALSE FALSE 736071.7412 863484.9811 1064924.113 602055.1826 680432.8415 646484.8453 520872.8287 487763.7217 731568.9143 590372.4598 1.246792138 1.462610538 1.803817396 1.019788733 1.152548413 1.095045737 0.882278331 0.826196605 1.239165043 1 19.1712659 -5.287888354 24.22981973 1.025047324 1.500227051 0.622653386 0.168935998 319.0849777 292311.971 0.048898913 0.072557375 5.15E-06 5.287888354 0.475179727 VEGVHT(ph)PR ddPTM_HeLa_A486_30min_R1 2 VEGVHTPR 8 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 VEGVHT(1)PR;VEGVHT(1)PR ; 117.52 0.0011248 911160000 890380 1120800 850220 317200 1042440 864330 912410 846250 947690 926900 TRUE FALSE FALSE 827968.9599 1031983.726 1179447.954 738457.6304 911687.4548 757697.7525 684115.3675 653577.3485 1029836.532 694798.2069 1.191668245 1.485299927 1.697540296 1.062837559 1.312161496 1.090529228 0.984624544 0.940672187 1.482209542 1 19.40623451 -5.281864964 24.66267411 1.122795445 1.460882557 0.389379328 0.191335401 667.0005306 805361.8588 0.053992203 0.080191591 5.23E-06 5.281864964 0.338087113 VHISGS(ph)VDGLDK ddPTM_HeLa_A485_30min_R1 1 VHISGSVDGLDK 12 0 J3KP75 J3KP75 PHACTR2 Phosphatase and actin regulator 1 0 VHIS(0.269)GS(0.731)VDGLDK 59.68 0.012902 0 291360 276780 219990 176310 347370 215160 255970 223050 183890 200270 TRUE FALSE FALSE 356172.0268 309147.0133 301373.4555 185941.3689 312784.6231 226425.4449 201279.9184 168346.6378 220795.0363 150346.3747 2.369009745 2.056231911 2.004527586 1.236753259 2.080426773 1.506025306 1.338774672 1.119725288 1.468575725 1 17.19793056 -1 0.189283827 0.964852438 7.292888746 0.711559451 0.240644708 29.46632298 0.343160719 0.491940953 54.43120784 0.1 1 6.328036307 SRSPSENGSVISNES(ph)GK ddPTM_HeLa_A486_30min_R1 1 SRSPSENGSVISNESGK 17 1 H0YDE5;A0A590UJI0;Q6ZVL6 H0YDE5 KIAA1549L UPF0606 protein KIAA1549L 1 0 S(0.002)RS(0.008)PS(0.033)ENGS(0.033)VIS(0.033)NES(0.891)GK 43.12 0.033932 409560000 718500 405510 255390 89669 326110 221990 240110 180540 105210 115500 TRUE FALSE FALSE 668136.8603 373375.9108 354283.8476 208753.9636 285206.2429 194603.1308 180031.9384 139434.9832 114329.6875 86578.04822 7.717162422 4.312593301 4.092074779 2.411165046 3.294209662 2.247719079 2.079417844 1.610511972 1.32053898 1 16.40171366 -1 0.393418576 1.46322232 94.32328807 0.932894517 0.489896456 16.31287876 0.218996511 0.354053033 1167.693616 0.1 1 92.86006575 up VEHS(ph)PGPPPVDK ddPTM_HeLa_A486_30min_R1 1 VEHSPGPPPVDK 12 0 Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q9H869-7 YY1AP1 YY1-associated protein 1 1 0 VEHS(1)PGPPPVDK 121.99 5.56E-05 455130000 1032300 1040300 598650 415340 989920 1182500 1312600 1212800 904890 1313600 TRUE FALSE FALSE 959941.1008 957862.8393 830463.3124 966932.5101 865755.003 1036615.173 984173.5967 936671.9152 983326.5938 984666.0099 0.974890055 0.972779429 0.843395937 0.98199034 0.879237218 1.052758156 0.999499919 0.951258504 0.998639725 1 19.90927493 -6.259434359 24.99977653 0.997326707 0.930835815 0.358310605 0.046726329 220.4839812 2749130.438 0.01574299 0.015011568 5.50E-07 6.259434359 -0.066490892 VEHTEELS(ph)SITEVVTTEENIPDVVPGSHLTPIER ddPTM_HeLa_A485_30min_R1 1 VEHTEELSSITEVVTTEENIPDVVPGSHLTPIER 34 0 A0A2R8YFL3;A0A2R8Y7R1;A0A2R8Y4U4;P15260 A0A2R8YFL3 IFNGR1 Interferon gamma receptor 1 1 0 VEHT(0.113)EELS(0.47)S(0.417)IT(0.001)EVVTTEENIPDVVPGSHLTPIER 106.93 6.89E-05 42367000 11811 18302 14377 10801 11123 13927 20974 14715 14271 20884 TRUE FALSE FALSE 14438.3162 20442.25969 19695.65058 11391.03128 10015.55506 14656.19618 16492.73356 11106.12318 17135.0588 15678.00314 0.920928263 1.303881592 1.25626015 0.72656136 0.638828489 0.93482544 1.051966466 0.708388886 1.092936303 1 13.9364542 -5.254785165 24.99858971 0.866438753 1.174709172 0.359976123 0.170976536 544.4158453 2045258.89 0.047027125 0.079086433 5.56E-06 5.254785165 0.308270419 VEHTEELSS(ph)ITEVVTTEENIPDVVPGSHLTPIER ddPTM_HeLa_A486_30min_R1 1 VEHTEELSSITEVVTTEENIPDVVPGSHLTPIER 34 0 A0A2R8YFL3;A0A2R8Y7R1;A0A2R8Y4U4;P15260 A0A2R8YFL3 IFNGR1 Interferon gamma receptor 1 1 0 VEHT(0.144)EELS(0.135)S(0.642)IT(0.079)EVVTTEENIPDVVPGSHLTPIER 59.993 0.0077629 36419000 5461.5 3493.4 3918.4 1416.2 6400.7 3972.2 5089.8 4190.6 4983.8 5404 TRUE FALSE FALSE 5078.677053 3216.570261 5435.709418 3296.985171 5597.864522 3482.15035 3816.278206 3236.49186 5415.799797 4050.803226 1.253745682 0.794057396 1.341884341 0.813908992 1.381914699 0.859619724 0.94210407 0.798975334 1.33696936 1 11.98399229 VEIAGPGFINVHLR ddPTM_HeLa_A485_30min_R1 2 VEIAGPGFINVHLR 14 0 P54136-2;P54136 P54136-2 RARS "Arginine--tRNA ligase, cytoplasmic" 0 0 ; ; 213.18 7.01E-22 78843000 78297 88746 95118 89533 121659 90993 113108 106449 87800 116892 FALSE FALSE TRUE 95713.89753 99124.07271 130306.1064 94423.96108 109546.2028 95757.25278 88941.55179 80342.21584 105420.6547 87752.97564 1.09071968 1.129580758 1.484919519 1.076020048 1.248347443 1.09121374 1.013544568 0.915549761 1.201334244 1 16.42116043 -6.450727801 3.569315897 1.026946329 1.209733653 0.296719381 0.126416471 0.305654298 7.537179319 0.047860071 0.040284703 3.54E-07 6.450727801 0.182787325 VEIAGPGFINVHLR ddPTM_HeLa_A486_30min_R1 2 VEIAGPGFINVHLR 14 0 P54136-2;P54136 P54136-2 RARS "Arginine--tRNA ligase, cytoplasmic" 0 0 ; ; 201.48 1.36E-15 76376000 76359 87024 73221 32230 95104 79198 90299 86679 74924 80293 FALSE FALSE TRUE 71006.62842 80127.9013 101574.1321 75033.06881 83175.16951 69427.35599 67705.23511 66944.08389 81418.47265 60187.11018 1.179764707 1.331313317 1.687639294 1.246663423 1.381943231 1.153525328 1.124912542 1.112266126 1.352755971 1 15.87716693 -6.262487956 23.92773804 1.154222397 1.374866006 0.346853661 0.148355817 62.01209248 1415049.867 0.051205765 0.047772989 5.46E-07 6.262487956 0.220643609 VEILANDQGNR ddPTM_HeLa_A485_30min_R1 2 VEILANDQGNR 11 0 P17066;P48741 P17066 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ; ; 206.49 4.26E-14 382080000 150935 192468 176251 150906 249430 192729 233950 257070 183008 243070 FALSE FALSE TRUE 184509.97 214975.4584 241453.5793 159149.6127 224595.8734 202819.9924 183964.6713 194023.1794 219736.027 182477.1224 1.011140288 1.178095399 1.323199183 0.872162004 1.230816611 1.111481756 1.008151975 1.063273998 1.204183977 1 17.47735608 -5.238020762 24.99950717 1.078497256 1.171539945 0.127331005 0.119488142 1828.522543 1951955.607 0.031771003 0.05498449 5.78E-06 5.238020762 0.093042688 VEILANDQGNR ddPTM_HeLa_A486_30min_R1 2 VEILANDQGNR 11 0 P17066;P48741 P17066 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ; ; 219.5 5.35E-20 81598000 100297 114823 101902 34634 136850 109064 126556 125090 104478 120972 FALSE FALSE TRUE 93266.69823 105724.0073 141361.1834 80629.70231 119684.9969 95608.79256 94890.35023 96609.7377 113534.2372 90679.8238 1.028527563 1.165904419 1.558904478 0.889169155 1.31986358 1.054355738 1.046432892 1.065393972 1.252034161 1 16.46849397 -6.307064548 24.94657123 1.085404803 1.19450497 0.087596899 0.175510932 1158.828339 633611.4107 0.060788574 0.053610707 4.93E-07 6.307064548 0.109100167 VEKPGGQDKGSQEDDPAATQRPPS(ph)NGGAK ddPTM_HeLa_A485_30min_R1 2 VEKPGGQDKGSQEDDPAATQRPPSNGGAK 29 3 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 VEKPGGQDKGSQEDDPAAT(0.001)QRPPS(0.999)NGGAK;VEKPGGQDKGSQEDDPAAT(0.003)QRPPS(0.997)NGGAK ; 251.59 3.51E-51 1556350000 475850 370752 187614 801420 450081 534991 873180 956780 317866 962240 TRUE FALSE FALSE 581701.1908 414108.2213 257020.2259 845199.5453 405269.3553 563002.3015 686617.9598 722128.2048 381658.7906 722371.2767 0.805266225 0.573262302 0.355800728 1.170034818 0.561026398 0.779380797 0.950505622 0.999663508 0.528341592 1 19.462381 -5.247073722 24.9628518 0.844059789 0.577625042 0.262692484 0.212399441 1126.509102 1957504.391 0.056328558 0.096988303 5.66E-06 5.247073722 -0.266434747 VEKPGGQDKGSQEDDPAATQRPPS(ph)NGGAK ddPTM_HeLa_A486_30min_R1 1 VEKPGGQDKGSQEDDPAATQRPPSNGGAK 29 3 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 VEKPGGQDKGSQEDDPAAT(0.044)QRPPS(0.956)NGGAK 225.18 1.21E-38 530290000 400490 293880 90239 207110 276870 412050 567510 473880 233150 602020 TRUE FALSE FALSE 372417.7191 270591.8785 125181.9575 482162.5468 242142.3829 361215.4604 425512.9955 365987.8687 253359.6297 451270.2735 0.825265348 0.599622653 0.277399077 1.068456256 0.536579511 0.800441513 0.942922724 0.811017012 0.561436559 1 18.78363222 -5.265512103 24.99992899 0.802230051 0.570648397 0.239950778 0.202504429 536.9186196 3295815.156 0.055772181 0.08623134 5.43E-06 5.265512103 -0.231581653 VELQELNDR ddPTM_HeLa_A485_30min_R1 3 VELQELNDR 9 0 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 VIM;DES Vimentin;Desmin 0 0 ;; ;; 206.43 8.54E-12 157632000 180315 216014 203477 193116 254019 221506 241366 200198 212368 258561 FALSE FALSE TRUE 220425.4497 241274.9582 278751.6097 203665.4381 228727.9764 233103.7116 189796.1823 151099.1266 254988.3096 194106.5012 1.135590247 1.243002974 1.436075598 1.049245836 1.178363296 1.200906256 0.977794052 0.778434136 1.313651568 1 17.56648891 -6.7555571 21.79857635 0.999006055 1.210738389 0.267359398 0.15257604 35.72096948 132377.5248 0.058729146 0.044077061 1.76E-07 6.7555571 0.211732334 VELQELNDR ddPTM_HeLa_A486_30min_R1 2 VELQELNDR 9 0 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 VIM;DES Vimentin;Desmin 0 0 ; ; 160.36 0.00060699 440170000 182889 224130 181568 82194 326308 203515 230700 247717 189025 229897 FALSE FALSE TRUE 170069.4255 206369.1225 251875.9922 191351.7859 285379.4079 178407.3885 172976.4199 191317.2467 205409.8392 172329.2948 0.986886331 1.197527807 1.461597069 1.110384546 1.656012161 1.035270229 1.003755166 1.110184121 1.191961236 1 17.39480845 VELS(ph)ES(ph)EEDKGGK ddPTM_HeLa_A486_30min_R1 2 VELSESEEDKGGK 13 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 VELS(1)ES(1)EEDKGGK;VELS(1)ES(1)EEDKGGK ; 148.44 7.97E-08 171154000 940400 976280 280900 960880 641380 1448870 1867700 1485440 761490 2803600 TRUE FALSE FALSE 874482.8162 898916.0172 389672.0028 2236977.2 560932.1398 1270123.15 1400381.705 1147237.739 827496.5663 2101560.312 0.416111216 0.427737435 0.185420328 1.064436356 0.266912225 0.604371496 0.666353327 0.54589808 0.393753423 1 21.00302943 -14 0.236070103 3.646035837 0.464771071 0.284284422 0.232225975 221.9583614 2.219186895 282.2659979 0.372982784 1.00E-14 14 -3.181264766 VELS(ph)PGPPKPAGR ddPTM_HeLa_A485_30min_R1 4 VELSPGPPKPAGR 13 1 A0A087WXE2;Q8IZ73-2;Q8IZ73 A0A087WXE2 RPUSD2 RNA pseudouridylate synthase domain-containing protein 2 1 0 VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR ;;; 121.13 3.65E-05 4396370000 3422548 3332625 2477369 4741320 4180708 3726818 5233742 5091897 3052968 5740415 TRUE FALSE FALSE 4183881.995 3722346.504 3393850.885 5000326.306 3764462.032 3921948.428 4115510.266 3843101.277 3665670.674 4309435.185 0.970865511 0.863766676 0.787539605 1.160320574 0.873539541 0.910084097 0.954999922 0.891787697 0.850615108 1 22.03906736 -5.220622415 0.00405032 1.837112674 8.08E-08 0.011462855 0.097486325 264694.5539 237.209173 52693.30191 54906.78899 6.02E-06 5.220622415 -1.837112593 VELS(ph)PGPPKPAGR ddPTM_HeLa_A486_30min_R1 6 VELSPGPPKPAGR 13 1 A0A087WXE2;Q8IZ73-2;Q8IZ73 A0A087WXE2 RPUSD2 RNA pseudouridylate synthase domain-containing protein 2 1 0 VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR ;;;;; 153.94 1.83E-08 6401590000 9084150 9534230 5263672 3895398 8807970 10054030 11920340 11393180 7245900 11953840 TRUE FALSE FALSE 8447397.996 8778702.892 7301906.764 9068683.407 7703192.272 8813666 8937744.852 8799201.625 7873980.446 8960520.658 0.942735173 0.979709018 0.814897598 1.012071034 0.859681325 0.983610924 0.997458205 0.98199669 0.878741398 1 23.09515113 VEMY(ph)SGS(ph)DDDDDFNKLPKK ddPTM_HeLa_A485_30min_R1 1 VEMYSGSDDDDDFNKLPKK 19 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.674)S(0.412)GS(0.914)DDDDDFNKLPKK 107.08 0.0018149 445320000 428780 281590 174360 749810 451280 471160 1061100 1012200 308250 1022800 TRUE FALSE FALSE 524160.6317 314519.501 238863.0197 790770.2217 406348.9787 495829.209 834387.3166 763956.3629 370112.9476 767834.7832 0.682647678 0.40961872 0.31108648 1.029870278 0.52921408 0.645749867 1.086675591 0.994948887 0.482021596 1 19.55043639 -5.682980743 0.886919089 0.862011324 0.480574242 0.241341048 0.238198022 0.908801901 1.521397818 0.119269856 0.215020267 2.08E-06 5.682980743 -0.381437082 VEMYS(ph)GS(ph)DDDDDFNKLPK ddPTM_HeLa_A485_30min_R1 1 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.071)S(0.944)GS(0.985)DDDDDFNKLPK 67.413 0.0035206 506600000 360800 214170 125830 622760 314370 305060 569850 503980 242240 854800 TRUE FALSE FALSE 441058.7153 239215.3185 172379.7532 656779.8019 283070.219 321032.4699 448096.8923 380378.1148 290855.346 641714.0914 0.687313433 0.372775542 0.268623918 1.023477294 0.441115791 0.500273368 0.69828121 0.592753252 0.45324756 1 19.29157114 -11.25925149 2.152559402 2.593606971 0.559143653 0.303510018 0.200066786 26374374.13 3857428.538 204651324 0.050564216 5.50E-12 11.25925149 -2.034463319 VEMYS(ph)GS(ph)DDDDDFNKLPK ddPTM_HeLa_A486_30min_R1 1 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.079)S(0.941)GS(0.98)DDDDDFNKLPK 93.407 0.00028492 625410000 288410 269040 136640 211380 220950 399020 518910 444180 216550 623870 TRUE FALSE FALSE 268193.9484 247720.2906 189550.6673 492103.3226 193236.3907 349792.9693 389073.2295 343049.9104 235320.7284 467648.8913 0.573494246 0.529714269 0.405326883 1.05229229 0.413208273 0.747982035 0.831977231 0.733562972 0.503199586 1 18.83506624 -14 0.076941337 2.02793032 0.313901985 0.238935139 0.191805173 404.2078151 2.209454651 73.55401739 7.482682855 1.00E-14 14 -1.714028335 VEMYS(ph)GS(ph)DDDDDFNKLPKK ddPTM_HeLa_A485_30min_R1 1 VEMYSGSDDDDDFNKLPKK 19 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.003)S(0.997)GS(1)DDDDDFNKLPKK 172.61 5.76E-13 512320000 279870 185480 74001 433780 252470 326990 707320 653810 194380 632070 TRUE FALSE FALSE 342126.116 207170.2725 101377.0493 457476.303 227333.2003 344110.6908 556195.3037 493462.0724 233390.283 474506.5814 0.72101448 0.436601473 0.213647299 0.9641095 0.479093882 0.725196877 1.172155088 1.039947794 0.491858896 1 18.85606857 -6.527356782 23.66007551 0.932084775 0.563102413 0.328493244 0.244663277 78.63560862 415464.1342 0.093664605 0.072902497 2.97E-07 6.527356782 -0.368982361 VEMYS(ph)GS(ph)DDDDDFNKLPKK ddPTM_HeLa_A486_30min_R1 2 VEMYSGSDDDDDFNKLPKK 19 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.091)S(0.927)GS(0.982)DDDDDFNKLPKK;VEMY(0.251)S(0.76)GS(0.989)DDDDDFNKLPKK ; 140.59 2.03E-07 601850000 404300 254100 78260 379960 255842 448960 745820 633830 196085 949620 TRUE FALSE FALSE 375960.6578 233964.1906 108564.3679 884566.0821 223751.9107 393571.8799 559207.9475 489520.7454 213081.8057 711828.971 0.528161501 0.328680343 0.15251468 1.242666593 0.314333807 0.552902306 0.785593127 0.687694327 0.299344104 1 19.44117113 -14 0.124237439 2.314103101 0.366331394 0.161160169 0.299203701 290.0014515 2.306043607 97.94522521 2.617833228 1.00E-14 14 -1.947771707 VEMYSGS(ph)DDDDDFNKLPK ddPTM_HeLa_A485_30min_R1 4 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 VEMYS(0.084)GS(0.916)DDDDDFNKLPK;VEMYS(0.024)GS(0.976)DDDDDFNKLPK;VEMYS(0.007)GS(0.993)DDDDDFNKLPK;VEMYS(0.017)GS(0.983)DDDDDFNKLPK ;;; 223.51 8.32E-35 670070000 755673 449128 275960 1379000 635708 681792 1224310 1127890 470364 2040430 TRUE FALSE FALSE 923769.8518 501649.6127 378049.0877 1454331.278 572414.6794 717489.5749 962726.1668 851273.209 564761.7404 1531788.352 0.603066246 0.327492771 0.24680243 0.949433566 0.37369045 0.468399942 0.628498164 0.55573814 0.368694369 1 20.54678554 -11.13705116 2.427271796 2.068474666 0.503397169 0.3821452 0.189802251 11269324.48 3475165.929 66143975 0.048091114 7.29E-12 11.13705116 -1.565077497 VEMYSGS(ph)DDDDDFNKLPK ddPTM_HeLa_A486_30min_R1 4 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 VEMYS(0.012)GS(0.988)DDDDDFNKLPK;VEMYS(0.029)GS(0.971)DDDDDFNKLPK;VEMYS(0.021)GS(0.979)DDDDDFNKLPK;VEMYS(0.012)GS(0.988)DDDDDFNKLPK ;;; 242.34 1.03E-45 930520000 1380090 1045070 403231 905620 846170 1510950 2085620 1766360 849240 2662260 TRUE FALSE FALSE 1283352.818 962254.8471 559372.8421 2108329.128 740035.4684 1324544.351 1563775.817 1364198.387 922852.807 1995612.768 0.643087095 0.482185153 0.280301295 1.05648208 0.370831196 0.66372814 0.783606841 0.683598747 0.462440821 1 20.92840037 -14 0.196042184 2.697999859 0.541529911 0.233853969 0.211589067 207.2104419 2.041625363 138.2792252 0.525252386 1.00E-14 14 -2.156469948 VENMSSNQDGNDS(ph)DEFM ddPTM_HeLa_A485_30min_R1 3 VENMSSNQDGNDSDEFM 17 0 Q86WR0-2;Q86WR0 Q86WR0-2 CCDC25 Coiled-coil domain-containing protein 25 1 0 VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM ;; 250.79 3.24E-43 1188420000 673898 841105 836905 794303 1014860 858807 1094091 1170048 811645 1013227 TRUE FALSE FALSE 823804.2852 939464.9131 1146510.986 837693.7616 913816.975 903772.8066 860329.5199 883091.8934 974534.7067 760648.156 1.08302936 1.235084718 1.507281622 1.101289414 1.201366187 1.188161438 1.131047927 1.160972897 1.281189863 1 19.53686975 VENMSSNQDGNDS(ph)DEFM ddPTM_HeLa_A486_30min_R1 3 VENMSSNQDGNDSDEFM 17 0 Q86WR0-2;Q86WR0 Q86WR0-2 CCDC25 Coiled-coil domain-containing protein 25 1 0 VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM ;; 291.74 2.72E-68 691135000 544983 578912 466602 191831 607794 531231 620442 596265 478873 601018 TRUE FALSE FALSE 506782.506 533036.9048 647282.7904 446592.2626 531558.8091 465693.1204 465200.8492 460508.4759 520382.0972 450519.1808 1.124885527 1.1831614 1.436748574 0.991283572 1.179880528 1.033681007 1.032588331 1.022172852 1.155072013 1 18.781229 -5.290874853 24.99967135 1.063014898 1.241754901 0.454412581 0.094771779 631.0807026 535978.1138 0.026408221 0.039176558 5.12E-06 5.290874853 0.178740003 VENSPQVDGS(ph)PPGLEGLLGGIGEK ddPTM_HeLa_A485_30min_R1 3 VENSPQVDGSPPGLEGLLGGIGEK 24 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;Q8WVB6-3 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 VENS(0.002)PQVDGS(0.998)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK ;; 263.01 1.28E-61 356499000 204030 224648 180049 285956 286780 241002 351982 354821 205998 388699 TRUE FALSE FALSE 249415.7696 250918.6294 246656.6176 301577.0522 258227.1763 253620.4921 276778.1703 267800.5934 247339.9091 291803.4928 0.854738808 0.859889054 0.845283294 1.033493634 0.884935179 0.86914824 0.948508764 0.917742933 0.847624909 1 18.15463763 -10.3136534 0.012525005 1.91917716 4.11E-06 0.207461101 0.056784339 6634.47737 14.2028704 1181.018489 1000.031059 4.86E-11 10.3136534 -1.919173052 VENSPQVDGS(ph)PPGLEGLLGGIGEK ddPTM_HeLa_A486_30min_R1 4 VENSPQVDGSPPGLEGLLGGIGEK 24 0 E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;Q8WVB6-3 E7EXA6 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 VENSPQVDGS(1)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK;VENS(0.001)PQVDGS(0.999)PPGLEGLLGGIGEK;VENSPQVDGS(1)PPGLEGLLGGIGEK ;;; 272.27 5.54E-75 463882000 372410 390122 244217 170704 401324 417511 522867 490915 333331 487161 TRUE FALSE FALSE 346305.9821 359207.3119 338784.3628 397407.5389 350986.2017 366002.7378 392040.1463 379144.3711 362224.3995 365172.7147 0.948334769 0.983664161 0.927737339 1.088272817 0.961151224 1.00227296 1.073574587 1.038260406 0.991926244 1 18.47821945 -5.239415132 24.98980002 1.022568086 0.956287297 0.408415342 0.037980295 841.5841268 954901.6919 0.010237926 0.017713937 5.76E-06 5.239415132 -0.066280789 VEPS(ph)SQSPGRS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 2 0 VEPS(0.482)S(0.099)QS(0.419)PGRS(1)PR 185.91 1.26E-16 2648700000 1338900 1779500 1634500 1390700 2056500 1558400 1913600 1922000 1457200 1872700 TRUE FALSE FALSE 1636733.686 1987597.045 2239169.567 1466670.42 1851747.639 1639995.414 1504743.727 1450626.486 1749646.674 1405870.354 1.164213813 1.413784023 1.592728348 1.043247277 1.317153913 1.166533891 1.070328941 1.031835177 1.244529176 1 20.42303213 -5.910274115 1.05646 1.092410156 1.366596125 0.340191553 0.147002741 0.581508166 1.391606348 0.069685236 0.089991957 1.23E-06 5.910274115 0.274185969 VEPS(ph)SQSPGRS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 2 0 VEPS(0.353)S(0.353)QS(0.295)PGRS(1)PR 65.225 0.01953 393800000 175370 214410 182150 75154 250350 204030 223780 230830 178000 209070 TRUE FALSE FALSE 163077.4686 197419.3707 252683.3581 174962.3101 218948.7686 178858.853 167787.8771 178275.048 193429.1833 156717.5112 1.040582302 1.259714816 1.612349228 1.116418381 1.39709192 1.141281862 1.070638985 1.137556656 1.234253798 1 17.25780687 -6.391576698 7.002007123 1.120026142 1.292232812 0.229119367 0.154609372 0.404713371 21.24734922 0.054882563 0.048256368 4.06E-07 6.391576698 0.17220667 VEPSSQS(ph)PGR ddPTM_HeLa_A485_30min_R1 4 VEPSSQSPGR 10 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPSSQS(1)PGR;VEPSSQS(1)PGR;VEPS(0.002)S(0.002)QS(0.996)PGR;VEPS(0.011)S(0.009)QS(0.981)PGR ;;; 153.54 2.70E-06 4253290000 1903580 1913360 1945530 2415050 2446710 1700080 2221090 1790910 2154590 2837460 TRUE FALSE FALSE 2327024.804 2137110.808 2665262.507 2546978.066 2203106.961 1789093.56 1746535.977 1351686.514 2586996.45 2130133.442 1.092431469 1.003275554 1.251218565 1.195689442 1.034257722 0.83989741 0.819918575 0.634554854 1.214476239 1 21.02251238 -6.072946133 3.835622013 0.875038448 1.133646361 0.338996753 0.151669423 0.248395091 7.01369886 0.050807568 0.05227856 8.45E-07 6.072946133 0.258607913 VEPSSQS(ph)PGR ddPTM_HeLa_A486_30min_R1 3 VEPSSQSPGR 10 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPSSQS(1)PGR;VEPSSQS(1)PGR;VEPSSQS(0.999)PGR ;; 155.33 2.11E-06 5551210000 1759910 2145830 1475090 588912 1864690 1938790 1889220 1987820 1693430 1830120 TRUE FALSE FALSE 1636549.397 1975786.616 2046284.352 1371016.898 1630803.193 1699601.802 1416517.174 1535236.78 1840217.876 1371846.04 1.192954129 1.440239326 1.491628282 0.999395601 1.188765463 1.23891585 1.03256279 1.119102826 1.341417202 1 20.38768715 -5.257172111 24.99439867 1.139159422 1.381470453 0.444184635 0.124543832 340.1820458 1992519.647 0.03376776 0.055900315 5.53E-06 5.257172111 0.242311031 VEPSSQS(ph)PGRS(ph)PR ddPTM_HeLa_A485_30min_R1 3 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 2 0 VEPS(0.011)S(0.011)QS(0.978)PGRS(1)PR;VEPS(0.05)S(0.05)QS(0.899)PGRS(1)PR;VEPS(0.044)S(0.044)QS(0.911)PGRS(1)PR ;; 86.453 0.0021058 5520810000 1954350 2554060 2492900 2375020 2870340 2456310 2842870 2952380 2269980 2798160 TRUE FALSE FALSE 2389088.415 2852735.1 3415127.448 2504761.329 2584558.871 2584918.593 2235467.6 2228304.176 2725544.165 2100630.208 1.137319841 1.35803774 1.625763276 1.192385656 1.230373086 1.230544331 1.064189019 1.060778888 1.297488798 1 21.00239078 -5.932880789 1.44872089 1.1234856 1.36209286 0.323382909 0.141411645 0.484618283 2.103370232 0.058056857 0.068838494 1.17E-06 5.932880789 0.238607259 VEPSSQS(ph)PGRS(ph)PR ddPTM_HeLa_A486_30min_R1 4 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 2 0 VEPS(0.001)S(0.001)QS(0.998)PGRS(1)PR;VEPS(0.174)S(0.301)QS(0.526)PGRS(1)PR;VEPS(0.005)S(0.027)QS(0.968)PGRS(1)PR;VEPS(0.003)S(0.004)QS(0.993)PGRS(1)PR ;;; 189.94 8.02E-17 9753250000 4721350 5686050 4412700 1843635 5953030 4822060 5392630 5194810 4316650 5098910 TRUE FALSE FALSE 4390407.746 5235466.69 6121415.616 4292075.452 5206345.468 4227163.264 4043336.937 4012065.165 4690820.698 3822109.748 1.148686991 1.3697845 1.601580284 1.122959762 1.362165351 1.105976422 1.05788091 1.049699101 1.227285716 1 21.86593777 -6.287721459 7.649124005 1.088821298 1.328373613 0.426674228 0.134838223 0.230677994 56.41332959 0.047555897 0.042655017 5.16E-07 6.287721459 0.239552315 VEPSSQS(ph)PGRSPR ddPTM_HeLa_A485_30min_R1 1 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPSS(0.002)QS(0.908)PGRS(0.089)PR 143.93 4.90E-08 1985100000 945900 1284100 1344600 1075200 1606600 1364300 1715200 1773300 1248700 1498400 TRUE FALSE FALSE 1156312.192 1434264.325 1842023.493 1133935.453 1446641.263 1435732.638 1348733.508 1338395.395 1499302.636 1124876.456 1.027945945 1.275041643 1.637534045 1.008053327 1.286044574 1.276346954 1.199005901 1.189815457 1.332859825 1 20.10133513 -10.62475099 2.566673297 0.972582655 1.2520525 0.16786635 0.165483163 22812096.27 19964801.53 4172013.01 0.041698353 2.37E-11 10.62475099 0.279469845 VEPSSQSPGRS(ph)PR ddPTM_HeLa_A485_30min_R1 9 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPSSQSPGRS(1)PR;VEPSSQSPGRS(1)PR;VEPSSQSPGRS(1)PR;VEPSSQS(0.009)PGRS(0.991)PR;VEPSSQS(0.022)PGRS(0.977)PR;VEPSSQS(0.001)PGRS(0.999)PR;VEPSSQS(0.004)PGRS(0.996)PR;VEPS(0.012)S(0.011)QS(0.048)PGRS(0.929)PR;VEPSSQS(0.022)PGRS(0.977)PR ;;;;;;;; 181.69 2.06E-17 15463923000 4902221 6890970 6480162 5373985 7937266 6743948 7661447 7941331 5865754 7263601 TRUE FALSE FALSE 5992703.149 7696808.998 8877443.586 5667552.193 7147003.928 7097050.689 6024516.26 5993707.121 7042957.024 5452918.947 1.098989955 1.41150255 1.628016787 1.039361166 1.310674887 1.301514062 1.104824098 1.099174071 1.291593932 1 22.37859728 -7.287670257 0.346746873 1.007919612 1.363069123 0.209786397 0.165339823 1.991722579 0.741427131 0.243279173 0.23319232 5.16E-08 7.287670257 0.35514951 VEPSSQSPGRS(ph)PR ddPTM_HeLa_A486_30min_R1 7 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EIZ7;K7EKH8 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPSSQS(0.002)PGRS(0.998)PR;VEPSSQS(0.17)PGRS(0.83)PR;VEPSSQS(0.005)PGRS(0.995)PR;VEPSSQS(0.001)PGRS(0.999)PR;VEPSSQSPGRS(1)PR;VEPSSQS(0.001)PGRS(0.999)PR;VEPSS(0.001)QS(0.015)PGRS(0.985)PR ;;;;;; 173.51 1.31E-12 19251980000 7786093 8870378 8034240 2989938 11201295 8163581 9403887 9362747 7005963 8601962 TRUE FALSE FALSE 7240328.088 8167456.942 11145312.89 6960726.767 9796324.133 7156441.377 7050935.008 7231053.895 7613245.514 6447974.726 1.122884068 1.266670123 1.728498229 1.07952141 1.519286993 1.109874291 1.093511577 1.121445757 1.180718883 1 22.62041466 -6.301033734 20.69650009 1.108224783 1.345848328 0.313436031 0.179102265 91.19882293 47669.71485 0.061777858 0.054486656 5.00E-07 6.301033734 0.237623544 VEQATKPS(ph)FER ddPTM_HeLa_A485_30min_R1 1 VEQATKPSFER 11 1 Q96E39;A0A1B0GUK8 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 0 VEQAT(0.149)KPS(0.851)FER 130.2 0.00088967 0 103900 105270 75522 150690 112600 104770 121900 128760 105960 172350 TRUE FALSE FALSE 127012.1965 117580.4108 103460.7305 158921.8131 101389.1486 110255.5952 95855.06917 97181.40811 127225.2001 129386.3169 0.981650917 0.908754601 0.799626522 1.228273723 0.783615695 0.852142621 0.740843943 0.751094942 0.983297177 1 16.98132553 VEQATKPS(ph)FER ddPTM_HeLa_A486_30min_R1 3 VEQATKPSFER 11 1 Q96E39;A0A1B0GUK8 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 0 VEQAT(0.004)KPS(0.996)FER;VEQAT(0.001)KPS(0.999)FER;VEQAT(0.004)KPS(0.996)FER ;; 93.909 0.0010915 1734920000 2029850 2150690 1447390 729260 2173130 2285360 2579360 2307390 1810950 2655710 TRUE FALSE FALSE 1887567.997 1980261.492 2007858.17 1697754.135 1900555.772 2003415.519 1933976.846 1782047.667 1967924.604 1990702.93 0.948191701 0.994754899 1.00861768 0.852841531 0.954715916 1.00638598 0.971504496 0.895185133 0.988557647 1 20.92484652 -6.023985949 24.85627483 0.967371736 0.951509218 0.038950099 0.048105537 3963.121738 4106913.203 0.016648431 0.016753443 9.46E-07 6.023985949 -0.015862518 VEQATKPS(ph)FESGR ddPTM_HeLa_A485_30min_R1 5 VEQATKPSFESGR 13 1 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 VEQATKPS(1)FESGR;VEQAT(0.002)KPS(0.998)FESGR;VEQATKPS(1)FESGR;VEQATKPS(1)FESGR;VEQAT(0.017)KPS(0.983)FESGR ;;;; 155.92 1.23E-08 8068210000 2125830 1957140 1431950 2794940 2255950 2015080 2879340 2439430 1890130 3741370 TRUE FALSE FALSE 2598713.549 2186010.498 1961687.893 2947620.495 2031339.697 2120586.473 2264145.487 1841155.968 2269461.754 2808715.314 0.925232093 0.778295503 0.698428881 1.049455059 0.723227337 0.755002283 0.806114267 0.655515338 0.808007042 1 21.42147897 VEQATKPS(ph)FESGR ddPTM_HeLa_A486_30min_R1 4 VEQATKPSFESGR 13 1 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 VEQATKPS(1)FESGR;VEQATKPS(0.999)FESGR;VEQATKPS(1)FESGR;VEQATKPS(1)FESGR ;;; 162.26 4.29E-12 7857900000 3610580 3951870 1996040 1473960 3127030 3847790 4482850 4097160 3241930 4552750 TRUE FALSE FALSE 3357496.987 3638709.429 2768960.144 3431453.37 2734808.739 3373088.791 3361193.515 3164326.108 3522943.103 3412711.767 0.983820849 1.066222312 0.811366542 1.005491704 0.801359425 0.988389592 0.984904013 0.927217511 1.032300219 1 21.70248714 VEQATKPS(ph)FESGRR ddPTM_HeLa_A485_30min_R1 2 VEQATKPSFESGRR 14 2 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 VEQAT(0.055)KPS(0.941)FES(0.004)GRR;VEQAT(0.001)KPS(0.999)FESGRR ; 97.384 0.0003942 759630000 621610 458640 366910 926890 626990 578760 805430 702450 465200 1160150 TRUE FALSE FALSE 759885 512273.9584 502645.2774 977523.6537 564564.6741 609062.9787 633343.3007 530173.0361 558561.3729 870945.956 0.872482379 0.588181109 0.57712568 1.122370047 0.648220099 0.699312023 0.727190127 0.608732416 0.641327248 1 19.73222367 VEQATKPS(ph)FESGRR ddPTM_HeLa_A486_30min_R1 1 VEQATKPSFESGRR 14 2 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 VEQATKPS(1)FESGRR 118.72 5.06E-05 402720000 281450 289950 162050 116870 238950 290590 343820 326460 241890 364080 TRUE FALSE FALSE 261721.8084 266973.306 224800.0998 272079.2663 208978.6629 254739.9603 257792.5994 252132.1846 262857.22 272911.9982 0.958997076 0.978239534 0.823709112 0.996948716 0.765736443 0.933414295 0.944599729 0.923858922 0.963157434 1 18.0580763 -7.874639794 1.071361756 0.999333936 0.90955104 0.150729611 0.066569053 0.941639045 2.387431686 0.061669539 0.020467981 1.33E-08 7.874639794 -0.089782896 VEQIAAIAQELNELDYYDSHNVNTR ddPTM_HeLa_A485_30min_R1 1 VEQIAAIAQELNELDYYDSHNVNTR 25 0 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 174.06 2.28E-22 24359000 8671.9 10305 10631 10130 14155 9129.7 14719 12138 10064 13831 FALSE FALSE TRUE 10600.93424 11510.08011 14563.84929 10683.37625 12745.6785 9607.716975 11574.16541 9161.136468 12083.75249 10383.18624 1.020971212 1.108530642 1.40263778 1.028911165 1.227530568 0.925314904 1.114702668 0.882304936 1.163780771 1 13.3419616 -6.255519173 24.99450194 1.015957339 1.161434649 0.234793907 0.126718183 714.7979076 3017806.519 0.041015883 0.039996284 5.55E-07 6.255519173 0.14547731 VEQIAAIAQELNELDYYDSHNVNTR ddPTM_HeLa_A486_30min_R1 1 VEQIAAIAQELNELDYYDSHNVNTR 25 0 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 162.01 3.95E-21 9026900 6199.2 7196.8 5150.5 1807.4 8186.5 6775.2 6415.8 7046.5 5444.9 5717.3 FALSE FALSE TRUE 5764.668093 6626.499358 7144.911535 4207.718541 7159.672834 5939.344709 4810.498981 5442.165774 5916.868316 4285.650867 1.345109126 1.546206064 1.667170695 0.981815522 1.670615049 1.385867607 1.122466372 1.269857472 1.380623037 1 12.06529861 -12.6696044 0.091990172 3.05E-09 1.716859514 0.279144857 0.200683093 195.0820792 1.643787042 42.23210083 4.864414169 2.14E-13 12.6696044 1.716859511 VEQMPQAS(ph)PGLAPR ddPTM_HeLa_A486_30min_R1 2 VEQMPQASPGLAPR 14 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR ; 155.79 2.45E-08 4110300000 1893870 2122300 1568080 765710 2406200 2015000 2446000 2296400 1823200 2255630 TRUE FALSE FALSE 1761119.493 1954121.219 2175282.571 1782611.577 2104391.959 1766409.787 1833984.929 1773559.85 1981236.444 1690805.566 1.041586051 1.155733845 1.286536201 1.054297201 1.244609079 1.044714911 1.084681152 1.048943702 1.171770713 1 20.68927934 -6.290349826 24.99286828 1.073997264 1.158047489 0.22283487 0.080603681 1156.252137 999567.3864 0.027507395 0.024262872 5.12E-07 6.290349826 0.084050225 VEQNSRPVS(ph)CSGR ddPTM_HeLa_A486_30min_R1 1 VEQNSRPVSCSGR 13 1 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 VEQNS(0.048)RPVS(0.756)CS(0.196)GR 45.704 0.032584 306020000 86202 77520 72502 35770 108260 76574 96853 86452 78065 95871 TRUE FALSE FALSE 80159.68495 71377.03288 100576.7161 83274.36772 94681.02132 67127.07843 72619.35499 66768.76683 84831.73705 71864.27758 1.115431584 0.993219932 1.399537009 1.158772766 1.317497712 0.934081308 1.010506992 0.92909536 1.180443746 1 16.13298719 -6.271019087 24.91380704 1.006374034 1.194717042 0.370636244 0.121145285 736.0753974 1914295.08 0.042635164 0.038060148 5.36E-07 6.271019087 0.188343008 VERLS(ph)SGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ddPTM_HeLa_A485_30min_R1 2 VERLSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 38 1 H3BND4;Q6P996-3;Q6P996-4;Q6P996-5;Q6P996 H3BND4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 VERLS(0.958)S(0.042)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK;VERLS(0.938)S(0.062)GPEQITLEASSTEGHPGAPSPQHTDQTEAFQK ; 340.36 3.62E-130 2912450000 319095 519919 422408 375610 836760 504737 731400 807090 494910 680770 TRUE FALSE FALSE 390076.5819 580719.0044 578674.2971 396128.6232 753449.2364 531164.2488 575130.415 609149.912 594233.8974 511066.5676 0.763259831 1.136288384 1.132287521 0.775101813 1.474268293 1.039324977 1.125353235 1.191918921 1.162732871 1 18.96315169 -4.259815478 23.94323846 1.120315097 0.76325961 0.289698142 0.165178826 98.70915413 1455146.041 0.039376405 0.242216256 5.50E-05 4.259815478 -0.357055487 VERPPS(ph)PFSMAPQASLPPVPPR ddPTM_HeLa_A485_30min_R1 5 VERPPSPFSMAPQASLPPVPPR 22 1 A0A1B0GW38;A0A0U1RQX8;P22681 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 VERPPS(0.946)PFS(0.054)MAPQASLPPVPPR;VERPPS(0.999)PFS(0.001)MAPQASLPPVPPR;VERPPS(1)PFSMAPQASLPPVPPR;VERPPS(0.996)PFS(0.004)MAPQASLPPVPPR;VERPPS(1)PFSMAPQASLPPVPPR ;;;; 190.93 3.66E-20 582440000 198357 243882 239461 224802 291985 224802 289801 247200 242217 304926 TRUE FALSE FALSE 242480.8303 272401.8784 328047.5887 237082.364 262913.9482 236572.2851 227882.6489 186573.8124 290827.7302 228913.5599 1.059268094 1.189977031 1.433063156 1.035685104 1.148529376 1.033456844 0.995496505 0.815040457 1.270469649 1 17.8044434 -5.899401207 1.53344779 1.009350622 1.211589486 0.224540133 0.142742347 0.534228996 2.595906464 0.054901925 0.066463008 1.26E-06 5.899401207 0.202238865 VERPPS(ph)PFSMAPQASLPPVPPR ddPTM_HeLa_A486_30min_R1 3 VERPPSPFSMAPQASLPPVPPR 22 1 A0A1B0GW38;A0A0U1RQX8;P22681 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 VERPPS(1)PFSMAPQASLPPVPPR;VERPPS(1)PFSMAPQASLPPVPPR;VERPPS(1)PFSMAPQASLPPVPPR ;; 219.95 3.52E-36 1010810000 245935 266179 234521 83571 263858 254994 270472 283247 240401 266147 TRUE FALSE FALSE 228696.2265 245086.0066 325333.8119 194557.5114 230762.4693 223535.4329 202797.0448 218757.8413 261239.1522 199502.0589 1.14633517 1.228488608 1.630729095 0.975215557 1.156692169 1.120466797 1.01651605 1.096519217 1.309455921 1 17.60604411 -5.300348356 24.9999817 1.100616316 1.324515347 0.35697762 0.146569944 602.2467695 386957.1982 0.041149581 0.061035824 5.01E-06 5.300348356 0.223899031 VERPPS(ph)PFSMAPQASLPPVPPRLDLLPQR ddPTM_HeLa_A485_30min_R1 2 VERPPSPFSMAPQASLPPVPPRLDLLPQR 29 2 A0A1B0GW38;A0A0U1RQX8;P22681 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 VERPPS(0.746)PFS(0.254)MAPQASLPPVPPRLDLLPQR;VERPPS(1)PFSMAPQASLPPVPPRLDLLPQR ; 194.11 1.73E-21 849500000 67217 56379 59862 150938 86938 68587 113370 111048 59740 153139 TRUE FALSE FALSE 82169.18975 62972.03362 82007.44487 159183.3607 78282.14746 72178.10926 89147.57335 83813.30388 71729.27003 114964.2656 0.714736786 0.547753106 0.713329872 1.384633389 0.680925912 0.627830821 0.775437245 0.729037875 0.623926658 1 16.81082597 VERPPS(ph)PFSMAPQASLPPVPPRLDLLPQR ddPTM_HeLa_A486_30min_R1 2 VERPPSPFSMAPQASLPPVPPRLDLLPQR 29 2 A0A1B0GW38;A0A0U1RQX8;P22681 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 VERPPS(0.954)PFS(0.046)MAPQASLPPVPPRLDLLPQR;VERPPS(0.834)PFS(0.165)MAPQASLPPVPPRLDLLPQR ; 77.643 0.0016716 448470000 31310 27131 20021.1 215783 34001 54572 79138 68953 25729 203457 TRUE FALSE FALSE 29115.33069 24981.04075 27773.8061 502353.7291 29736.27753 47839.46149 59336.83536 53253.90713 27959.21044 152510.0429 0.190907629 0.163799316 0.182111326 3.293905893 0.194979143 0.313680729 0.38906838 0.349182953 0.183327012 1 17.21854472 VES(ph)KGNS(ph)PPSSGEACR ddPTM_HeLa_A485_30min_R1 1 VESKGNSPPSSGEACR 16 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 2 0 VES(1)KGNS(0.974)PPS(0.02)S(0.006)GEACR 99.13 0.00061859 320890000 446430 305130 210200 827660 375740 339430 544100 409230 283460 956040 TRUE FALSE FALSE 545736.8133 340812.2992 287961.7272 872872.9701 338330.0063 357202.0299 427848.5901 308865.7009 340347.822 717716.8226 0.760379019 0.474856223 0.401219141 1.216180174 0.471397626 0.497692152 0.596124511 0.430344798 0.474209063 1 19.45305521 -10.21958014 5.231895829 1.000033874 0.589853612 0.220375937 0.230554298 9.16E-05 1.37E-05 0.224498937 0.054444502 6.03E-11 10.21958014 -0.410180262 VES(ph)KGNS(ph)PPSSGEACR ddPTM_HeLa_A486_30min_R1 3 VESKGNSPPSSGEACR 16 1 P41227-2;P41227 P41227-2 NAA10 N-alpha-acetyltransferase 10 2 0 VES(1)KGNS(0.971)PPS(0.024)S(0.005)GEACR;VES(1)KGNS(0.924)PPS(0.06)S(0.017)GEACR;VES(1)KGNS(0.969)PPS(0.015)S(0.016)GEACR ;; 81.312 0.00041315 760510000 765955.3 832887.7 298619.4 505701 535035 1004833 1239773 996778 611535 1590961 TRUE FALSE FALSE 712265.7889 766886.6453 414252.829 1177297.485 467925.9213 880866.9209 929568.6824 769833.4089 664543.3462 1192574.01 0.597250806 0.643051617 0.347360269 0.987190291 0.392366358 0.738626629 0.779464146 0.645522544 0.55723447 1 20.18564737 -14 0.250231682 3.184409971 0.603467541 0.282207583 0.175008772 236.899902 2.350920814 265.0937326 0.24226602 1.00E-14 14 -2.580942431 VES(ph)LESLYFT(ph)PIPAR ddPTM_HeLa_A486_30min_R1 1 VESLESLYFTPIPAR 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 2 0 VES(1)LESLYFT(1)PIPAR 133.71 3.38E-05 21379000 30585 30592 19851 9792.9 29850 30934 31190 27924 26643 36396 TRUE FALSE FALSE 28441.14944 28167.77851 27537.83883 22798.36611 26105.93466 27117.67759 23385.93211 21566.31478 28952.43669 27282.2047 1.042479878 1.03245976 1.009369995 0.835649697 0.956885081 0.993969435 0.8571863 0.790490175 1.061220565 1 14.73567261 -5.066774871 8.406868913 0.920181002 1.033471655 0.257245056 0.078149728 0.428054231 50.50381887 0.02103252 0.036689232 8.57E-06 5.066774871 0.113290653 VES(ph)LESLYFTPIPAR ddPTM_HeLa_A485_30min_R1 4 VESLESLYFTPIPAR 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VES(1)LESLYFTPIPAR;VES(1)LESLYFTPIPAR;VES(1)LESLYFTPIPAR;VES(1)LESLYFTPIPAR ;;; 249.62 8.29E-42 124391000 61519 54141 43374 119583 67318 70093 87208 84556 52346 130209 TRUE FALSE FALSE 75203.68931 60472.31899 59419.84754 126115.5165 60615.58355 73762.9611 68575.29838 63818.50842 62851.36205 97750.29262 0.769344902 0.618640798 0.607873858 1.29018045 0.620106415 0.754606039 0.701535479 0.652872812 0.642978761 1 16.5768134 VES(ph)LESLYFTPIPAR ddPTM_HeLa_A486_30min_R1 2 VESLESLYFTPIPAR 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VES(1)LESLYFTPIPAR;VES(1)LESLYFTPIPAR ; 236.3 4.72E-41 97911000 60025 57781 34955 25428 42697 58083 60634 59595 55773 91729 TRUE FALSE FALSE 55817.55747 53202.22313 48490.51213 59197.66906 37341.54413 50917.31 45462.73188 46026.51945 60607.44855 68759.46134 0.811780028 0.773744036 0.705219488 0.860938523 0.543074995 0.740513509 0.661185108 0.669384526 0.881441584 1 16.06927062 -7.958867259 4.075543032 0.998715297 0.720031446 0.546542685 0.083456057 0.135018922 4.940720467 0.079923289 0.021016285 1.10E-08 7.958867259 -0.278683851 VES(ph)PPLEEWPSPAPSFK ddPTM_HeLa_A485_30min_R1 1 VESPPLEEWPSPAPSFK 17 0 A0A0D9SFF0;Q08050-2;Q08050;Q08050-3 A0A0D9SFF0 FOXM1 Forkhead box protein M1 1 0 VES(1)PPLEEWPSPAPSFK 83.966 0.0019464 26100000 36706 34128 22088 36151 25005 26546 36545 30982 26396 51244 TRUE FALSE FALSE 44871.12307 38118.97273 30259.27036 38125.83759 22515.4144 27935.90751 28736.8622 23383.61592 31693.43508 38469.81388 1.166398237 0.990880092 0.78657179 0.99105854 0.585274846 0.72617735 0.746997693 0.60784323 0.823852051 1 15.23143923 -4.163065811 0.840518606 0.741595971 1.474237384 0.472742387 0.130128125 2.165831219 1.06695459 0.045593749 1.532357616 6.87E-05 4.163065811 0.732641413 VES(ph)PPLEEWPSPAPSFK ddPTM_HeLa_A486_30min_R1 1 VESPPLEEWPSPAPSFK 17 0 A0A0D9SFF0;Q08050-2;Q08050;Q08050-3 A0A0D9SFF0 FOXM1 Forkhead box protein M1 1 0 VES(1)PPLEEWPSPAPSFK 128.9 1.92E-07 0 52988 51074 22964 14166 30064 44959 46537 45957 41082 50533 TRUE FALSE FALSE 49273.81483 47026.71023 31856.2758 32979.16391 26293.09278 39412.41569 34892.95038 35493.59433 44643.02084 37879.20789 1.300814288 1.241491384 0.840996356 0.870640273 0.694129953 1.040476237 0.921163676 0.937020501 1.178562682 1 15.20911854 -4.708506887 6.810658932 0.925604032 1.278210264 0.54848389 0.121699024 0.150739337 14.8576585 0.031968682 0.084921705 1.96E-05 4.708506887 0.352606232 VES(ph)PVKLFSGLSVSSEGPSQR ddPTM_HeLa_A485_30min_R1 2 VESPVKLFSGLSVSSEGPSQR 21 1 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 VES(1)PVKLFSGLSVSSEGPSQR;VES(1)PVKLFSGLSVSSEGPSQR ; 125.12 8.26E-07 149776000 37186 48677 30551 43133 63647 53134 77913 94438 40506 65589 TRUE FALSE FALSE 45457.89741 54369.35172 41853.08623 45489.24657 57310.0812 55916.01408 61266.25106 71276.93243 48635.18266 49238.86938 0.923211641 1.104195779 0.85000096 0.923848316 1.16391952 1.13560719 1.244266 1.447574514 0.987739631 1 15.58751001 -5.806515478 5.857913071 1.190140589 0.954014532 0.361234022 0.135998831 0.192241685 15.53729111 0.041976374 0.048626061 1.56E-06 5.806515478 -0.236126057 VES(ph)VEPSENEASKELEPEMEFEIEPDKECK ddPTM_HeLa_A486_30min_R1 1 VESVEPSENEASKELEPEMEFEIEPDKECK 30 2 Q9H307 Q9H307 PNN Pinin 1 0 VES(1)VEPSENEASKELEPEMEFEIEPDKECK 204.98 2.71E-29 90437000 48859 50889 15272 51839 31070 73179 97085 79409 34711 138610 TRUE FALSE FALSE 45434.23641 46856.37031 21185.7274 120683.8118 27172.91088 64150.91901 72793.30614 61329.30419 37719.77743 103901.1538 0.437283271 0.450970645 0.203902715 1.161525232 0.261526556 0.617422585 0.700601519 0.590265863 0.363035212 1 16.66485215 -11.54336276 2.222064271 8.42387922 0.539582826 0.229391325 0.257070034 8205358.152 534006.4042 307770929.2 0.061768558 2.86E-12 11.54336276 -7.884296394 VESGSAQERGILLESLST(ph)LLEK ddPTM_HeLa_A485_30min_R1 1 VESGSAQERGILLESLSTLLEK 22 1 F8WEY1;Q9H857 F8WEY1 NT5DC2 5-nucleotidase domain-containing protein 2 1 0 VES(0.003)GS(0.013)AQERGILLES(0.167)LS(0.167)T(0.65)LLEK 55.526 0.034423 54354000 53386 38081 26068 96009 72654 53332 106370 91551 42978 136140 TRUE FALSE FALSE 65261.53152 42534.24169 35711.63798 101253.7286 65420.31266 56124.38105 83643.18054 69097.9737 51603.29038 102202.8035 0.638549328 0.416174902 0.349419358 0.990713807 0.640102917 0.549147177 0.818403974 0.676086872 0.504910713 1 16.64107525 -14 0.125895104 2.144757335 0.467726877 0.284206676 0.17815302 205.8902865 1.651604442 60.80338639 1.552066274 1.00E-14 14 -1.677030458 VESGYFS(ph)LEK ddPTM_HeLa_A485_30min_R1 1 VESGYFSLEK 10 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 VESGYFS(1)LEK 166.45 4.04E-07 143380000 105850 94004 71019 120930 116640 93502 152000 145750 78032 166320 TRUE FALSE FALSE 129395.9673 104996.9501 97291.88345 127536.0997 105026.9121 98397.62014 119523.9583 110004.584 93692.30665 124859.4849 1.036332702 0.840920897 0.779210995 1.021437016 0.841160863 0.788066843 0.957267751 0.881027053 0.750381973 1 16.92994589 -4.255058061 24.24753383 0.870205958 1.036332817 0.232981107 0.088600293 691.8133766 2628620.131 0.021293706 0.190928007 5.56E-05 4.255058061 0.166126859 VESGYFS(ph)LEK ddPTM_HeLa_A486_30min_R1 1 VESGYFSLEK 10 0 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 VESGYFS(1)LEK 167.44 3.71E-07 258530000 213110 199910 92023 100410 183540 213880 256520 239730 166420 293340 TRUE FALSE FALSE 198172.0895 184068.4035 127656.7701 233759.5544 160518.7018 187493.6602 192335.9828 185148.7123 180845.4196 219885.7547 0.901250241 0.83710927 0.580559529 1.063095491 0.730009554 0.852686707 0.874708701 0.842022315 0.822451731 1 17.74639462 -14 0.266219106 2.126362366 0.819620026 0.155387979 0.11593494 380.5844237 3.71984684 235.0854774 0.142101607 1.00E-14 14 -1.30674234 VESLESLYFT(ph)PIPAR ddPTM_HeLa_A485_30min_R1 4 VESLESLYFTPIPAR 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VESLESLYFT(1)PIPAR;VESLESLYFT(1)PIPAR;VESLESLYFT(1)PIPAR;VESLESLYFT(1)PIPAR ;;; 195.15 5.25E-18 331632000 327365 300306 284546 338109 337439 285458 345658 279165 248983 379197 TRUE FALSE FALSE 400186.2149 335424.1744 389811.4063 356579.0385 303842.3883 300404.1395 271805.3445 210699.346 298951.6043 284670.1665 1.405789092 1.178290576 1.369344077 1.252604173 1.067348897 1.055270888 0.954807973 0.740152537 1.050168368 1 18.11893178 -6.016228824 1.217788901 0.918720829 1.315754825 0.734989248 0.097816871 0.223777476 0.693755775 0.0431185 0.048569819 9.63E-07 6.016228824 0.397033996 VESLESLYFT(ph)PIPAR ddPTM_HeLa_A486_30min_R1 4 VESLESLYFTPIPAR 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VESLESLYFT(1)PIPAR;VESLESLYFT(1)PIPAR;VESLESLYFT(1)PIPAR;VESLESLYFT(1)PIPAR ;;; 240.92 1.63E-40 413593000 315536 356054 275167 125633 331207 327433 339766 330667 318794 350494 TRUE FALSE FALSE 293418.5558 327838.9843 381719.0316 292479.9731 289663.9297 287037.6456 254752.9531 255381.3425 346427.3206 262728.0211 1.116814851 1.24782649 1.452905671 1.113242402 1.102523928 1.092527719 0.969645157 0.972036943 1.318577741 1 18.00321055 -5.496713294 22.98934336 1.073450436 1.272218078 0.349566785 0.120476107 295.8618701 259947.5921 0.034131171 0.050361919 3.19E-06 5.496713294 0.198767642 VET(ph)PSHPGGVSEEFWER ddPTM_HeLa_A485_30min_R1 4 VETPSHPGGVSEEFWER 17 0 Q92620;H3BQT9 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1 0 VET(0.923)PS(0.077)HPGGVSEEFWER;VET(0.906)PS(0.094)HPGGVSEEFWER;VET(0.978)PS(0.022)HPGGVSEEFWER;VET(0.996)PS(0.004)HPGGVSEEFWER ;;; 197.86 7.40E-25 607450000 473200 532270 529090 491760 757620 519900 728230 707300 478607 636510 TRUE FALSE FALSE 578461.7075 594514.3464 724822.4083 518623.6036 682188.6926 547121.1601 572637.7114 533833.566 574659.0349 477839.7711 1.21057673 1.244170917 1.516873337 1.085350435 1.427651556 1.144988746 1.198388552 1.11718111 1.20261868 1 18.86616741 -7.641092316 0.439595854 1.001692926 1.307521554 0.332986668 0.11979523 1.143575629 0.604883344 0.13854799 0.088503924 2.29E-08 7.641092316 0.305828628 VET(ph)PSHPGGVSEEFWER ddPTM_HeLa_A486_30min_R1 4 VETPSHPGGVSEEFWER 17 0 Q92620;H3BQT9 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1 0 VET(0.963)PS(0.037)HPGGVSEEFWER;VET(0.909)PS(0.091)HPGGVSEEFWER;VET(0.905)PS(0.095)HPGGVSEEFWER;VET(0.918)PS(0.082)HPGGVSEEFWER ;;; 178.77 2.10E-17 590280000 615250 635170 510923 158966 717590 620020 758690 748110 500081 600240 TRUE FALSE FALSE 572124.1522 584836.816 708766.0686 370080.8817 627583.1709 543528.2363 568857.7374 577781.6841 543428.4237 449935.9971 1.271567858 1.299822241 1.575259755 0.822518945 1.394827653 1.208012339 1.264308126 1.28414194 1.207790502 1 18.77936027 -13.60328295 0.206189957 7.42E-11 1.299366784 0.168675122 0.177015341 222.8687363 2.572019806 92.41381775 0.38923638 2.49E-14 13.60328295 1.299366784 VET(ph)PVLPPVLVPR ddPTM_HeLa_A485_30min_R1 1 VETPVLPPVLVPR 13 0 K7EJX0;B7Z5N5;Q15796-2;Q15796;H0YMP2;H0YL71;H3BP09;H3BVD1;P84022-3;P84022-2;P84022;O15198-2;O15198 K7EJX0 SMAD2;SMAD3;SMAD9 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 9 1 0 VET(1)PVLPPVLVPR 92.925 0.0067067 42724000 27773 28653 28045 35348 38268 26690 40162 40966 23551 45911 TRUE FALSE FALSE 33951.00803 32003.7191 38420.01255 37278.97173 34457.90355 28087.44713 31581.06061 30919.02427 28277.46968 34466.23263 0.985051323 0.928552866 1.114714595 1.081608545 0.999758341 0.814926523 0.916289893 0.897081634 0.82043982 1 15.07289599 -6.110947893 6.030466673 0.885560431 1.028242927 0.491727595 0.067537775 0.202145318 9.515503776 0.022819457 0.022908452 7.75E-07 6.110947893 0.142682496 VET(ph)PVLPPVLVPR ddPTM_HeLa_A486_30min_R1 2 VETPVLPPVLVPR 13 0 K7EJX0;B7Z5N5;Q15796-2;Q15796;H0YMP2;H0YL71;H3BP09;H3BVD1;P84022-3;P84022-2;P84022;O15198-2;O15198 K7EJX0 SMAD2;SMAD3;SMAD9 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 9 1 0 VET(1)PVLPPVLVPR;VET(1)PVLPPVLVPR ; 190.85 8.22E-17 40032000 80012 79750 52717 40946 84568 78739 102138 91552 60189 102103 TRUE FALSE FALSE 74403.57198 73430.31956 73130.43421 95324.3573 73960.69287 69024.98274 76581.99209 70707.60817 65406.23098 76535.74422 0.972141484 0.959425172 0.955506933 1.245488082 0.966354919 0.901865964 1.000604265 0.923850795 0.854584112 1 16.22384606 -5.986792729 24.9990969 0.935299477 1.032778733 0.215709146 0.087457724 380.7569777 720703.3293 0.028135112 0.031885914 1.03E-06 5.986792729 0.097479256 VETGVLKPGMVVTFAPVNVTTEVK ddPTM_HeLa_A485_30min_R1 6 VETGVLKPGMVVTFAPVNVTTEVK 24 1 P68104;Q5VTE0;A0A087WVQ9 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 0 ;;;;; ;;;;; 319.88 4.76E-100 923999000 935970 778827 605750 1156833 1120495 1025072 1476173 1476796 848042 1595500 FALSE FALSE TRUE 1144173.297 869904.0428 829842.1324 1220027.858 1008934.584 1078743.185 1160776.579 1114609.465 1018236.251 1197771.213 0.955251959 0.726268951 0.692821904 1.018581716 0.842343323 0.900625406 0.969113773 0.930569589 0.850109136 1 20.19192093 -5.260828482 24.99999919 0.924028371 0.784929742 0.362480256 0.083908473 58.82681218 2407342.599 0.022854723 0.036720713 5.48E-06 5.260828482 -0.139098628 VETGVLKPGMVVTFAPVNVTTEVK ddPTM_HeLa_A486_30min_R1 4 VETGVLKPGMVVTFAPVNVTTEVK 24 1 P68104;Q5VTE0;A0A087WVQ9 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 0 0 ;;; ;;; 197.37 2.77E-34 406603000 444442 442355 209163 223655 567744 502708 591342 556112 373164 623869 FALSE FALSE TRUE 413288.9109 407301.1788 290156.5152 520680.1429 496532.2535 440688.9981 443381.977 429497.4374 405510.156 467648.1417 0.883760405 0.870956479 0.620459036 1.113401501 1.061764624 0.94235165 0.948110208 0.918420067 0.867126628 1 18.83506393 -5.269833478 24.99766697 0.976007102 0.79964842 0.453667588 0.093892448 612.7681246 1824825.373 0.027775447 0.041973266 5.37E-06 5.269833478 -0.176358683 VETLS(ph)PESALQGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VETLSPESALQGSPR 15 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 2 0 VETLS(0.993)PES(0.007)ALQGS(1)PR 134.83 2.32E-05 1197100000 679950 808770 786770 791480 1105100 858320 1115000 1149200 790560 982990 TRUE FALSE FALSE 831202.5317 903348.6161 1077828.963 834716.5483 995072.3638 903260.308 876771.1413 867356.8981 949218.1406 737948.6836 1.126369015 1.224134735 1.46057441 1.131130886 1.348430299 1.224015068 1.188119392 1.175362078 1.286292884 1 19.49316097 -12.97524947 0.299583635 1.68E-07 1.256593325 0.349795504 0.097680295 151.3186261 2.507210942 93.44855516 0.09821759 1.06E-13 12.97524947 1.256593157 VETLS(ph)PESALQGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 VETLSPESALQGSPR 15 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 2 0 VETLS(1)PESALQGS(1)PR;VETLS(1)PESALQGS(1)PR ; 361.67 1.29E-104 2169400000 1427820 1598940 1280550 434910 1683470 1495550 1599410 1696620 1336190 1656240 TRUE FALSE FALSE 1327737.191 1472234.171 1776413.254 1012492.459 1472313.495 1311044.247 1199220.701 1310336.663 1452012.025 1241506.724 1.069456303 1.185844702 1.430852705 0.81553522 1.185908595 1.056010589 0.965939756 1.05544065 1.169556312 1 20.24366064 -5.25760264 24.99994267 1.04201971 1.224430562 0.322063523 0.128183673 417.4878637 2720312.241 0.034618496 0.057145888 5.53E-06 5.25760264 0.182410852 VETLSPESALQGS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VETLSPESALQGSPR 15 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 VETLSPESALQGS(1)PR 202.79 8.49E-23 0 64103 59503 51530 49145 84070 64251 76352 75201 57151 74517 TRUE FALSE FALSE 78362.4912 66461.35824 70593.09134 51829.66691 75699.69561 67615.08301 60038.77146 56757.83684 68620.68148 55941.28328 1.400798956 1.18805566 1.26191405 0.926501215 1.353199125 1.208679513 1.073246231 1.014596618 1.226655476 1 15.77162573 -1.000000049 0.718690051 1.123057353 39.64712994 0.309012896 0.123798191 414.6330608 2.034930314 0.047170962 25745.40369 0.099999989 1.000000049 38.52407259 VETLSPESALQGS(ph)PR ddPTM_HeLa_A486_30min_R1 2 VETLSPESALQGSPR 15 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 VETLSPESALQGS(1)PR;VETLSPESALQGS(1)PR ; 363.28 6.95E-106 889680000 1019540 1107680 864260 402750 1400620 803970 1024800 927750 742920 783340 TRUE FALSE FALSE 948075.5109 1019903.403 1198924.618 937622.3539 1224941.179 704784.3556 768384.2008 716521.5776 807316.9038 587186.5653 1.614606953 1.736932455 2.041812072 1.596804847 2.08611922 1.200273298 1.30858614 1.220262213 1.374889944 1 19.16345943 -6.276719539 24.85178993 1.240055149 1.811354222 0.745226412 0.173598379 379.3114244 616913.698 0.057999437 0.051343856 5.29E-07 6.276719539 0.571299073 VEVAAPAHRGT(ph)PDTDLEVQR ddPTM_HeLa_A485_30min_R1 3 VEVAAPAHRGTPDTDLEVQR 20 1 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 0 VEVAAPAHRGT(1)PDTDLEVQR;VEVAAPAHRGT(1)PDTDLEVQR;VEVAAPAHRGT(1)PDTDLEVQR ;; 228.33 1.13E-35 1773020000 787720 1143260 1063730 729370 1447070 1133580 1291330 1672680 990400 1063340 TRUE FALSE FALSE 962945.5964 1276954.312 1457247.992 769213.6362 1302994.63 1192932.496 1015426.796 1262452.607 1189164.196 798268.9073 1.20629225 1.599654327 1.82551015 0.963602151 1.632275312 1.4943993 1.272036011 1.581487887 1.489678709 1 19.60651529 -10.08402442 5.423443774 0.99999507 1.457758042 0.251497641 0.233542457 1.34E-05 2.27E-06 0.218211785 0.052923562 8.24E-11 10.08402442 0.457762972 VEVAAPAHRGT(ph)PDTDLEVQR ddPTM_HeLa_A486_30min_R1 1 VEVAAPAHRGTPDTDLEVQR 20 1 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 0 VEVAAPAHRGT(1)PDTDLEVQR 191.71 2.49E-19 251370000 439770 474830 400480 147620 665040 426160 516810 514170 349610 451640 TRUE FALSE FALSE 408944.394 437202.7415 555556.5812 343666.8203 581624.4819 373584.7121 387498.6717 397104.7153 379914.4763 338546.4043 1.207941921 1.291411564 1.641005706 1.015124709 1.718005197 1.103496322 1.144595443 1.172969821 1.12219321 1 18.36899407 VEVFRALA ddPTM_HeLa_A485_30min_R1 1 VEVFRALA 8 1 Q9BW83-2;Q9BW83 Q9BW83-2 IFT27 Intraflagellar transport protein 27 homolog 0 0 0 0.037816 6668900 6121.5 7027.3 4791 8328.5 7938.3 6556.2 8075.9 7782.4 5907.5 11511 FALSE FALSE TRUE 7483.206556 7849.081606 6563.39027 8783.464866 7147.934979 6899.472494 6350.417991 5873.754198 7093.081063 8641.519544 0.865959571 0.908298774 0.759518073 1.016425968 0.827161814 0.798409638 0.734872838 0.679713118 0.820814097 1 13.07706931 -5.994195291 24.96482857 0.78564368 0.885125735 0.115933305 0.097503277 254.1806927 1093166.007 0.029255855 0.033078491 1.01E-06 5.994195291 0.099482055 VEVS(ph)EDEPASK ddPTM_HeLa_A486_30min_R1 1 VEVSEDEPASK 11 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 VEVS(1)EDEPASK 159.5 1.01E-06 0 284360 257750 161480 103360 239510 342180 326170 317630 235320 381120 TRUE FALSE FALSE 264427.8324 237324.9513 224009.3806 240627.3035 209468.4225 299965.3106 244558.8161 245312.5828 255717.7271 285685.0713 0.925592056 0.830722271 0.784113008 0.842281686 0.73321445 1.049985949 0.856043387 0.85868184 0.895103569 1 18.12406612 -6.244974097 24.99886766 0.918385606 0.822493753 0.353088569 0.072460421 1078.064162 1636801.178 0.02389782 0.023833076 5.69E-07 6.244974097 -0.095891853 VEVT(ph)PTVPR ddPTM_HeLa_A485_30min_R1 2 VEVTPTVPR 9 0 Q8IXS8 Q8IXS8 FAM126B Protein FAM126B 1 0 VEVT(0.995)PT(0.005)VPR;VEVT(0.998)PT(0.002)VPR ; 102.52 0.0073477 143543000 89352 103701 95999 84522 134055 101639 119209 117163 104438 122845 TRUE FALSE FALSE 109228.0441 115827.9299 131513.025 89139.22284 120708.0135 106960.6609 93739.0233 88428.59055 125397.7486 92222.00229 1.184403303 1.2559685 1.42604825 0.966572191 1.308885196 1.159817161 1.016449665 0.958866521 1.359737866 1 16.49282337 -5.947367117 0.922027545 1.087212532 1.260750351 0.150353251 0.150501559 1.078830015 2.002180402 0.079053363 0.10195129 1.13E-06 5.947367117 0.173537819 VEVT(ph)PTVPR ddPTM_HeLa_A486_30min_R1 2 VEVTPTVPR 9 0 Q8IXS8 Q8IXS8 FAM126B Protein FAM126B 1 0 VEVT(0.997)PT(0.003)VPR;VEVT(0.986)PT(0.014)VPR ; 123.62 0.0015253 172281000 64616 89728 69460 19766.8 91671 76727 77705 94485 73310 78654 TRUE FALSE FALSE 60086.75208 82617.6265 96356.7722 46018.10936 80172.76838 67261.20284 58262.38712 72972.82809 79664.56983 58958.52645 1.01913592 1.401283775 1.634314458 0.780516613 1.359816352 1.140822319 0.988192729 1.237697624 1.351196759 1 15.84741285 -5.24826335 24.99357889 1.137552325 1.356548565 0.188545507 0.216053458 1397.299311 2650530.503 0.05797824 0.099648403 5.65E-06 5.24826335 0.218996241 VEVTEFEDIKS(ph)GYR ddPTM_HeLa_A486_30min_R1 2 VEVTEFEDIKSGYR 14 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 1 0 VEVTEFEDIKS(1)GYR;VEVTEFEDIKS(1)GYR ; 119.8 4.50E-05 342760000 94330 117324 68300 59302 110796 161577 171972 149807 93673 159773 TRUE FALSE FALSE 87717.95412 108026.819 94747.58914 138058.053 96898.93255 141643.2725 128942.7867 115699.2164 101792.6511 119764.8009 0.732418486 0.901991388 0.79111382 1.152743143 0.80907689 1.182678646 1.076633416 0.966053595 0.849937965 1 16.86984443 -5.235088134 24.8323129 1.006075573 0.81785621 0.370725634 0.117302192 778.7151985 733827.5291 0.031275109 0.054147868 5.82E-06 5.235088134 -0.188219363 VFCVEEEDS(ph)ESSLQK ddPTM_HeLa_A485_30min_R1 2 VFCVEEEDSESSLQK 15 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VFCVEEEDS(1)ESSLQK;VFCVEEEDS(0.883)ES(0.099)S(0.018)LQK ; 307.03 2.35E-68 145847000 136218 119294 113510 200411 188295 116759 179424 195082 131321 254350 TRUE FALSE FALSE 166519.2242 133244.3956 155502.0725 211358.9455 169547.6887 122872.3207 141088.5966 147237.8336 157675.9202 190945.226 0.872078489 0.697814752 0.814380521 1.106908771 0.887938873 0.643495118 0.738895649 0.771099842 0.825765187 1 17.54279932 -6.132393673 18.69824694 0.776589382 0.875386363 0.080873528 0.126699843 6.119463442 876.1727463 0.043656862 0.043657079 7.37E-07 6.132393673 0.098796981 VFCVEEEDS(ph)ESSLQK ddPTM_HeLa_A486_30min_R1 2 VFCVEEEDSESSLQK 15 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VFCVEEEDS(0.98)ES(0.02)SLQK;VFCVEEEDS(0.998)ES(0.002)SLQK ; 363.82 2.87E-118 208593000 207990 263920 169949 112168 260290 280390 339640 312390 202647 313820 TRUE FALSE FALSE 193410.9751 243006.018 235757.8042 261132.7727 227642.0011 245798.3326 254658.4797 241265.6164 220212.6051 235237.4294 0.822194731 1.033024458 1.002212126 1.11008173 0.967711651 1.044894655 1.082559354 1.025625969 0.936129109 1 17.8437581 -4.260268389 24.65078924 1.026243836 0.822194653 0.605795603 0.04838118 53.94061117 1135344.346 0.011786262 0.070534659 5.49E-05 4.260268389 -0.204049183 VFDAIMNFK ddPTM_HeLa_A486_30min_R1 1 VFDAIMNFK 9 0 P13639 P13639 EEF2 Elongation factor 2 0 0 146.58 0.00041104 15992000 17368 21558 15576 9641.9 21262 22274 21075 22766 18855 23195 FALSE FALSE TRUE 16150.59289 19849.66557 21607.44434 22446.83047 18595.1217 19526.06035 15801.81209 17582.67878 20489.36658 17386.82103 0.928898553 1.141650077 1.242748419 1.291025567 1.069495204 1.123037979 0.908838486 1.011264725 1.17844237 1 14.08570656 -6.350136036 2.477405289 1.027843305 1.153326146 0.16092296 0.111744164 0.514399582 6.184044408 0.04606796 0.040199388 4.47E-07 6.350136036 0.12548284 VFDDES(ph)DEKEDEEYADEKGLEAADK ddPTM_HeLa_A485_30min_R1 4 VFDDESDEKEDEEYADEKGLEAADK 25 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VFDDES(1)DEKEDEEYADEKGLEAADK;VFDDES(1)DEKEDEEYADEKGLEAADK;VFDDES(1)DEKEDEEYADEKGLEAADK;VFDDES(0.989)DEKEDEEY(0.011)ADEKGLEAADK ;;; 233.36 8.77E-40 1595410000 641390 351886 263871 1855030 540141 537010 1018860 755670 368131 2510540 TRUE FALSE FALSE 784064.9927 393036.0067 361487.8635 1956365.592 486362.6655 565127.0132 801172.2377 570340.7477 442011.515 1884708.581 0.416013914 0.208539405 0.191800402 1.038020207 0.258057225 0.299848485 0.425090778 0.30261482 0.234525125 1 20.84591004 -10.2533735 4.166619903 1.000476634 0.377867718 0.39018358 0.234399496 284227384 371438999 1608119.18 0.059227364 5.58E-11 10.2533735 -0.622608916 VFDDES(ph)DEKEDEEYADEKGLEAADK ddPTM_HeLa_A486_30min_R1 2 VFDDESDEKEDEEYADEKGLEAADK 25 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VFDDES(1)DEKEDEEYADEKGLEAADK;VFDDES(1)DEKEDEEYADEKGLEAADK ; 210.68 3.40E-29 1169360000 693840 547800 139742 903130 323030 816450 1393960 1020220 364460 2088720 TRUE FALSE FALSE 645205.399 504390.3329 193853.8448 2102532.282 282512.5653 715724.7001 1045176.464 787938.1772 396051.6862 1565690.917 0.412089891 0.322151919 0.12381361 1.342878252 0.180439551 0.457130263 0.667549676 0.503252697 0.252956495 1 20.57836801 -11.17362255 2.343791416 2.322504734 0.481882441 0.187404949 0.32844003 26887960.93 5589143.255 188968900.8 0.084232189 6.70E-12 11.17362255 -1.840622293 VFDDES(ph)DEKEDEEYADEKGLEAADKK ddPTM_HeLa_A485_30min_R1 1 VFDDESDEKEDEEYADEKGLEAADKK 26 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VFDDES(1)DEKEDEEYADEKGLEAADKK 186.17 1.71E-19 717100000 38239 13618 9301.1 110300 26848 25544 66797 48634 12910 172990 TRUE FALSE FALSE 46745.13363 15210.50664 12741.96394 116325.4097 24174.91885 26881.44434 52525.27527 36706.43524 15500.91858 129866.7766 0.359946823 0.117123925 0.098115656 0.895728782 0.186151682 0.206992466 0.404455063 0.282646849 0.119360155 1 16.98667287 -10.21546192 4.127991628 1.000367306 0.300081724 0.471844464 0.223192029 614077315.1 1073300667 3140203.232 0.055984219 6.09E-11 10.21546192 -0.700285582 VFDDES(ph)DEKEDEEYADEKGLEAADKK ddPTM_HeLa_A486_30min_R1 1 VFDDESDEKEDEEYADEKGLEAADKK 26 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VFDDES(1)DEKEDEEYADEKGLEAADKK 99.319 0.0017405 1393500000 301220 211330 40801 530850 117650 378320 703880 556490 154470 1370800 TRUE FALSE FALSE 280106.0335 194583.4411 56600.23989 1235845.628 102893.24 331646.7249 527761.7791 429789.3751 167859.584 1027542.758 0.272597935 0.189367732 0.055083099 1.202719418 0.100135239 0.322757104 0.513615395 0.418269091 0.163360194 1 19.970767 -11.18328211 2.38162774 2.726947488 0.368107731 0.274143934 0.312267093 30630495.11 6606307.036 285273370.1 0.076726269 6.56E-12 11.18328211 -2.358839757 VFDKDGNGYIS(ph)AAELR ddPTM_HeLa_A485_30min_R1 2 VFDKDGNGYISAAELR 16 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3 P0DP25 CALM2;CALM1 1 0 VFDKDGNGYIS(1)AAELR;VFDKDGNGY(0.001)IS(0.999)AAELR ; 88.396 0.00055618 124315000 134486 145512 115066 135520 175894 145495 194157 213503 116000 190254 TRUE FALSE FALSE 164401.9467 162528.3626 157633.7017 142923.1144 158381.3758 153112.8932 152673.7708 161141.0545 139280.136 142827.1792 1.151055056 1.137937216 1.103667402 1.000671688 1.108902218 1.072015103 1.068940602 1.128224022 0.975165489 1 17.12391102 -1 0.141064854 0.995257296 1.508910817 0.421785624 0.045440443 83.39028729 0.783923518 0.196245235 8.651252902 0.1 1 0.513653521 VFDKDGNGYIS(ph)AAELR ddPTM_HeLa_A486_30min_R1 1 VFDKDGNGYISAAELR 16 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3 P0DP25 CALM2;CALM1 1 0 VFDKDGNGYIS(1)AAELR 83.251 0.0012373 69118000 112840 111740 78129 54786 126740 109880 148530 157290 106280 128200 TRUE FALSE FALSE 104930.4987 102885.3154 108382.6412 127544.5767 110843.0874 96324.12278 111366.223 121478.5006 115492.436 96097.88556 1.091912669 1.070630377 1.127835858 1.327236036 1.153439399 1.002354237 1.158883178 1.264112107 1.201820782 1 16.55221707 -4.998995643 24.47316352 1.167592222 1.085761861 0.086757625 0.095868409 61.50338315 1498411.041 0.026066316 0.053505818 1.00E-05 4.998995643 -0.081830361 VFDKDGNGYISAAELR ddPTM_HeLa_A485_30min_R1 1 VFDKDGNGYISAAELR 16 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3 P0DP25 CALM2;CALM1 0 0 233.37 5.02E-35 657430000 583180 688580 596300 590560 780170 746910 979760 1050700 625000 861310 FALSE FALSE TRUE 712906.3791 769103.4412 816896.1841 622820.7974 702493.5355 786017.0527 770426.2721 793014.1776 750431.7672 646601.2682 1.102544047 1.18945551 1.263369288 0.963222357 1.086440083 1.215613225 1.191501332 1.226434615 1.160578867 1 19.30251681 -6.259338956 24.97761342 1.175020003 1.12395228 0.024941285 0.093183055 619.8892683 7371552.752 0.032139064 0.030718665 5.50E-07 6.259338956 -0.051067723 VFDKDGNGYISAAELR ddPTM_HeLa_A486_30min_R1 2 VFDKDGNGYISAAELR 16 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3 P0DP25 CALM2;CALM1 0 0 ; ; 252.05 7.82E-43 919750000 240360 248520 177000 104870 315430 263770 297050 306350 222870 313800 FALSE FALSE TRUE 223512.0052 228826.3701 245539.1402 244142.6598 275865.8281 231228.7392 222724.9481 236600.7926 242188.551 235222.4375 0.950215496 0.97280843 1.043859348 1.037922498 1.172787048 0.98302161 0.946869484 1.005859794 1.029615004 1 17.84366616 -4.643948613 4.62674851 1.028692148 0.955506183 0.185515501 0.055935169 0.361080687 12.59164914 0.015686691 0.044877766 2.27E-05 4.643948613 -0.073185966 VFDLQFSTDS(ph)PR ddPTM_HeLa_A485_30min_R1 6 VFDLQFSTDSPR 12 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 VFDLQFST(0.01)DS(0.99)PR;VFDLQFST(0.001)DS(0.999)PR;VFDLQFST(0.001)DS(0.999)PR;VFDLQFSTDS(1)PR;VFDLQFSTDS(1)PR;VFDLQFS(0.008)T(0.008)DS(0.985)PR ;;;;; 218.63 6.41E-23 686250000 420699 528957 542854 449208 773571 497654 573008 637848 480734 631740 TRUE FALSE FALSE 514282.0412 590813.9198 743678.2846 473747.0956 696551.5551 523710.3939 450580.1598 481414.7779 577212.9042 474258.8443 1.084391039 1.245762577 1.568085221 0.998920951 1.468716005 1.104271223 0.950072234 1.015088667 1.217084112 1 18.85531515 -6.503966043 23.8018895 1.044011916 1.274169202 0.299898819 0.166844725 502.7678077 632742.1053 0.057683673 0.049982086 3.13E-07 6.503966043 0.230157286 VFDLQFSTDS(ph)PR ddPTM_HeLa_A486_30min_R1 6 VFDLQFSTDSPR 12 0 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 NCAPH Condensin complex subunit 2 1 0 VFDLQFST(0.004)DS(0.995)PR;VFDLQFST(0.011)DS(0.989)PR;VFDLQFST(0.001)DS(0.999)PR;VFDLQFSTDS(1)PR;VFDLQFS(0.007)T(0.056)DS(0.937)PR;VFDLQFSTDS(1)PR ;;;;; 293.69 1.03E-49 724095000 501996 617407 547955 214299 739225 555149 623218 651066 461974 544065 TRUE FALSE FALSE 466808.6727 568481.4208 760137.8507 498898.9021 646504.5075 486660.3607 467282.2647 502832.4845 502018.2783 407827.5827 1.144622611 1.393925877 1.863870623 1.223308386 1.58523978 1.19329928 1.145783867 1.232953595 1.230957148 1 18.63759983 -6.339508614 7.56473155 1.172726424 1.450469284 0.344568989 0.193721133 0.358568696 30.94608582 0.068398986 0.060264131 4.58E-07 6.339508614 0.27774286 VFDMLNRR ddPTM_HeLa_A485_30min_R1 2 VFDMLNRR 8 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KTB5;J3KSZ0;J3QR64;J3QLN6;J3QKZ9;J3KS25 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 ; ; 128.69 0.0013835 1151520000 1074900 1718470 1508960 942760 1967690 1762860 1935160 2448700 1392910 1308060 FALSE FALSE TRUE 1314007.797 1919430.118 2067187.097 994260.5916 1771779.875 1855160.624 1521697.257 1848152.486 1672454.26 981984.7151 1.338114307 1.954643579 2.105111277 1.012501087 1.804284575 1.88919501 1.549613995 1.882058302 1.703136754 1 19.90534104 -9.799754313 6.102730245 0.99999997 1.703334838 0.315662394 0.305863493 1.36E-07 2.63E-08 0.290593672 0.070479315 1.59E-10 9.799754313 0.703334868 VFDMLNRR ddPTM_HeLa_A486_30min_R1 2 VFDMLNRR 8 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;Q14240-2;Q14240;E7EQG2;J3KTB5;J3KSZ0;J3QR64;J3QLN6;J3QKZ9;J3KS25 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 ; ; 127.56 0.0011919 615170000 948560 991130 884400 337250 1254150 825840 1052150 1127800 718310 1030560 FALSE FALSE TRUE 882070.8424 912589.2492 1226863.365 785135.0437 1096842.813 723956.2573 788890.9415 871024.5597 780573.6892 772501.0682 1.141837699 1.181343673 1.588170445 1.016354638 1.419859283 0.937158908 1.021216635 1.127538324 1.01044998 1 19.5591774 -6.270544875 24.86173042 1.027365404 1.268253667 0.40284663 0.152171988 660.7044886 1803987.881 0.051774377 0.046308138 5.36E-07 6.270544875 0.240888263 VFDQQS(ph)SPMVTR ddPTM_HeLa_A486_30min_R1 1 VFDQQSSPMVTR 12 0 O15357;A0A0A0MTP6 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 VFDQQS(0.647)S(0.353)PMVTR 83.53 0.0030447 0 65121 78048 69083 26374 90237 64343 83504 79319 59509 79010 TRUE FALSE FALSE 60556.35419 71863.19223 95833.78771 61400.00487 78918.63403 56405.01485 62610.41598 61259.79522 64667.28803 59225.38173 1.022473008 1.213385041 1.61812022 1.036717756 1.332513725 0.952379085 1.057155128 1.034350365 1.091884698 1 15.85392797 -6.261693211 24.99980653 1.03117583 1.252102905 0.318201629 0.158935757 29.34154863 2889736.928 0.054462178 0.051053434 5.47E-07 6.261693211 0.220927075 VFDQQSS(ph)PMVTR ddPTM_HeLa_A485_30min_R1 3 VFDQQSSPMVTR 12 0 O15357;A0A0A0MTP6 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 VFDQQS(0.013)S(0.987)PMVTR;VFDQQS(0.138)S(0.862)PMVTR;VFDQQS(0.169)S(0.831)PMVTR ;; 223.06 4.55E-23 582780000 632010 919720 1011300 628400 978940 824550 962030 1036160 786850 890820 TRUE FALSE FALSE 772598.4441 1027273.253 1385421.954 662727.9008 881473.2963 867722.163 756484.4314 782040.1354 944763.5776 668754.9683 1.15527881 1.536098126 2.071643605 0.99098763 1.318081118 1.297518828 1.131183269 1.169397122 1.412720088 1 19.35111818 -5.293713591 24.99731485 1.203160201 1.582516459 0.3636709 0.24136486 711.7719294 551286.5855 0.067975534 0.100833123 5.08E-06 5.293713591 0.379356258 VFDVNRPCS(ph)PDSTTGSFADSFSSQK ddPTM_HeLa_A485_30min_R1 1 VFDVNRPCSPDSTTGSFADSFSSQK 25 1 Q9NRE2-2;Q9NRE2 Q9NRE2-2 TSHZ2 Teashirt homolog 2 1 0 VFDVNRPCS(0.964)PDS(0.028)T(0.003)T(0.004)GS(0.001)FADSFSSQK 146.89 2.07E-09 355830000 285020 271650 263740 362590 369910 306970 378600 414300 298510 508760 TRUE FALSE FALSE 348421.7157 303417.1045 361308.4011 382397.3736 333080.4616 323042.4745 297709.0171 312692.2754 358418.2189 381935.495 0.912252776 0.79441976 0.945993252 1.00120931 0.872085642 0.845803752 0.7794746 0.818704413 0.938426052 1 18.54296948 -5.980962346 24.96175239 0.859071906 0.910958324 0.031956193 0.075666847 621.2178896 814522.4904 0.024063962 0.02728236 1.04E-06 5.980962346 0.051886418 VFDVNRPCS(ph)PDSTTGSFADSFSSQK ddPTM_HeLa_A486_30min_R1 2 VFDVNRPCSPDSTTGSFADSFSSQK 25 1 Q9NRE2-2;Q9NRE2 Q9NRE2-2 TSHZ2 Teashirt homolog 2 1 0 VFDVNRPCS(0.999)PDS(0.001)T(0.001)TGSFADSFSSQK;VFDVNRPCS(0.796)PDS(0.129)T(0.052)T(0.021)GS(0.003)FADSFSSQK ; 184.82 1.22E-20 678940000 419010 538020 288434 168176 488520 475860 545620 542380 435090 632110 TRUE FALSE FALSE 389639.5628 495385.3358 400123.3693 391522.2271 427245.2663 417153.2314 409100.105 418891.9141 472803.9515 473825.5417 0.822327056 1.045501545 0.844452935 0.826300384 0.901693195 0.880394142 0.863398169 0.8840636 0.997843953 1 18.85399644 -7.762285681 23.10753629 0.998922165 0.885537761 0.374328661 0.059634846 9.1461006 249528.2138 0.047154149 0.014915882 1.73E-08 7.762285681 -0.113384405 VFDVNRPCSPDS(ph)TTGSFADSFSSQK ddPTM_HeLa_A485_30min_R1 1 VFDVNRPCSPDSTTGSFADSFSSQK 25 1 Q9NRE2-2;Q9NRE2 Q9NRE2-2 TSHZ2 Teashirt homolog 2 1 0 VFDVNRPCS(0.197)PDS(0.647)T(0.145)T(0.008)GS(0.003)FADSFSSQK 155.14 7.60E-10 256480000 196180 188940 177800 265020 280180 232890 281310 299670 240150 402150 TRUE FALSE FALSE 239819.5642 211034.8894 243575.6189 279497.3715 252284.2954 245083.7603 221205.8204 226175.4626 288345.9022 301901.406 0.794363853 0.699019234 0.806805182 0.925790228 0.835651277 0.811800659 0.732708812 0.749169955 0.955099567 1 18.20371795 -7.865480871 5.118397988 0.995845043 0.796214028 0.609183445 0.058990406 0.150110299 5.769637151 0.062920952 0.016474152 1.36E-08 7.865480871 -0.199631015 VFGALGPIGPSS(ph)PGLTLGGLAVSEHR ddPTM_HeLa_A485_30min_R1 1 VFGALGPIGPSSPGLTLGGLAVSEHR 26 0 Q86YD1;M0QZB9;M0QYQ4;M0QYH7;A0A0C4DGR2;M0QY25;Q86YD1-2 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 VFGALGPIGPS(0.004)S(0.995)PGLTLGGLAVSEHR 198.4 2.54E-28 56334000 50928 84028 87167 35525 93201 62848 68693 81984 60646 64612 TRUE FALSE FALSE 62256.7579 93854.34365 119413.7006 37465.6408 83921.58119 66138.6241 54016.17938 61877.29545 72817.09592 48505.4175 1.283501125 1.934924973 2.461863165 0.772401161 1.730148621 1.363530663 1.113611266 1.27567803 1.501215734 1 15.56585827 -5.264566987 24.99942741 1.281363557 1.897579261 0.394627727 0.363287647 285.3179987 2280593.852 0.100201145 0.1560172 5.44E-06 5.264566987 0.616215703 VFGFSLITNK ddPTM_HeLa_A485_30min_R1 1 VFGFSLITNK 10 0 P00491 P00491 PNP Purine nucleoside phosphorylase 0 0 166.09 1.29E-05 15037000 18281 17425 18219 24680 27680 22129 26071 23859 17337 33716 FALSE FALSE TRUE 22347.54538 19462.70217 24958.96626 26028.20591 24924.08201 23287.64022 20500.71787 18007.54284 20816.37688 25311.2217 0.882910578 0.768935708 0.986083033 1.028326733 0.98470482 0.920052003 0.809945806 0.711445028 0.822416916 1 14.62748952 -6.74196644 6.071939247 0.811500828 0.931530012 0.168559843 0.094708393 0.242555552 30.0231196 0.039496102 0.029186674 1.81E-07 6.74196644 0.120029184 VFGS(ph)LER ddPTM_HeLa_A485_30min_R1 8 VFGSLER 7 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER ;;;;;;; 144.9 0.0012725 7245080000 2238490 2754840 2653130 2280970 3342720 2686040 3111260 3307470 2478862 2943490 TRUE FALSE FALSE 2736434.378 3076994.574 3634633.193 2405573.615 3009907.06 2826676.901 2446513.884 2496307.797 2976346.866 2209732.114 1.238355709 1.392474026 1.644829783 1.088626807 1.362114005 1.27919438 1.107154061 1.129687975 1.346926556 1 21.07544005 -6.129701911 0.855622396 1.150763205 1.393233319 0.268602896 0.153407128 0.850915624 1.364242998 0.093309873 0.100510443 7.42E-07 6.129701911 0.242470114 VFGS(ph)LER ddPTM_HeLa_A486_30min_R1 8 VFGSLER 7 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER;VFGS(1)LER ;;;;;;; 151.97 0.00080659 7430959000 3050722 3341581 2823011 1136732 3827351 2919890 3443290 3524627 2759857 3185054 TRUE FALSE FALSE 2836882.142 3076781.952 3916156.462 2646369.543 3347288.949 2559663.659 2581742.423 2722146.374 2999083.627 2387495.747 1.188225003 1.288706778 1.64027788 1.108429008 1.40200834 1.072112343 1.081360009 1.140168052 1.256162919 1 21.18706673 -6.266109342 24.9606093 1.116933621 1.328908596 0.35647024 0.144632729 466.7350942 2494656.75 0.049812856 0.045410363 5.42E-07 6.266109342 0.211974974 VFHVGCFVCSTCR ddPTM_HeLa_A485_30min_R1 1 VFHVGCFVCSTCR 13 0 Q15654;H7BZE2 Q15654 TRIP6 Thyroid receptor-interacting protein 6 0 0 116.03 0.00042517 12060000 10410 10233 14989 12164 17310 10053 12932 12601 11352 19077 FALSE FALSE TRUE 12725.66859 11429.66033 20534.05484 12828.48852 15586.55562 10579.35954 10168.97256 9510.584992 13630.24227 14321.45499 0.888573724 0.798079549 1.433796696 0.895753157 1.088336041 0.738707034 0.710051637 0.664079523 0.95173586 1 13.80589045 -6.263923404 24.96780235 0.785490826 1.02451372 0.227532264 0.188199191 300.4020851 3019430.301 0.064709148 0.059741809 5.45E-07 6.263923404 0.239022893 VFIDQNLS(ph)PGK ddPTM_HeLa_A486_30min_R1 2 VFIDQNLSPGK 11 0 F5H452;Q5JSB6;Q5JSB5;Q14186 F5H452 TFDP1 Transcription factor Dp-1 1 0 VFIDQNLS(1)PGK;VFIDQNLS(1)PGK ; 196.11 1.01E-11 368610000 937350 1028310 485910 393270 731720 1078640 1112360 1010790 787770 1347180 TRUE FALSE FALSE 871646.6055 946822.9706 674067.3651 915552.4348 639940.8546 945568.3636 834035.7627 780655.1824 856054.5379 1009837.359 0.863155435 0.937599468 0.667500919 0.906633555 0.633706853 0.936357083 0.82591098 0.773050408 0.847715258 1 19.94569153 -8.034536264 20.3407977 1.000000004 0.81750681 0.23353477 0.098440947 563.0934755 331646.5263 0.089699301 0.02316026 9.24E-09 8.034536264 -0.182493195 VFIDQNLS(ph)PGKGVVSLVAVHPSTVNPLGK ddPTM_HeLa_A485_30min_R1 2 VFIDQNLSPGKGVVSLVAVHPSTVNPLGK 29 1 F5H452;Q5JSB6;Q5JSB5;Q14186 F5H452 TFDP1 Transcription factor Dp-1 1 0 VFIDQNLS(0.868)PGKGVVS(0.014)LVAVHPS(0.059)T(0.059)VNPLGK;VFIDQNLS(1)PGKGVVSLVAVHPSTVNPLGK ; 293.92 2.36E-92 478970000 306530 396260 288130 142688 521440 454350 507380 560240 407540 286051 TRUE FALSE FALSE 374716.541 442599.16 394721.2771 150482.6841 469523.6027 478139.0634 398974.1181 422840.2616 489329.5398 214743.7501 1.744947366 2.061057236 1.838103679 0.700754663 2.186436637 2.226556364 1.857907939 1.969045718 2.278667201 1 17.71225662 VFIDQNLS(ph)PGKGVVSLVAVHPSTVNPLGK ddPTM_HeLa_A486_30min_R1 1 VFIDQNLSPGKGVVSLVAVHPSTVNPLGK 29 1 F5H452;Q5JSB6;Q5JSB5;Q14186 F5H452 TFDP1 Transcription factor Dp-1 1 0 VFIDQNLS(0.942)PGKGVVS(0.021)LVAVHPS(0.018)T(0.018)VNPLGK 63.848 0.0071664 129350000 134700 147170 100620 28413 182320 152730 146910 169760 111250 115880 TRUE FALSE FALSE 125258.2256 135507.7132 139582.7587 66146.89991 159451.7255 133887.7254 110151.5641 131109.3538 120893.2396 86862.89375 1.442022251 1.560018408 1.606931944 0.761509283 1.835671351 1.541368468 1.268108388 1.509382755 1.391770805 1 16.4064524 -8.048124405 19.07301853 0.999999993 1.439056307 0.196897637 0.26529853 796.0941613 315516.3242 0.250609985 0.064707195 8.95E-09 8.048124405 0.439056313 VFIGNLNTLVVK ddPTM_HeLa_A485_30min_R1 3 VFIGNLNTLVVK 12 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;G3V4M8;G3V2H6;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ;; ;; 283.58 1.33E-66 0 94649 106735 88195 89344 128012 110015 133704 142742 92543 131292 FALSE FALSE TRUE 115703.3435 119216.7298 120822.0006 94224.63649 115266.6758 115775.2153 105137.0481 107734.3007 111115.5312 98563.32065 1.173898594 1.209544575 1.225831271 0.955980743 1.169468267 1.174627788 1.066695475 1.093046581 1.127351742 1 16.58876324 -1.000000026 0.047407337 0.759172866 1.772238668 0.308972942 0.070770141 714.6766277 2.56944648 13.4568456 54.094724 0.099999994 1.000000026 1.013065802 VFIGNLNTLVVK ddPTM_HeLa_A486_30min_R1 2 VFIGNLNTLVVK 12 0 P07910;P07910-2;G3V2Q1;G3V4C1;P07910-4;B2R5W2;P07910-3;G3V4W0;G3V576;G3V575;G3V555;B4DSU6;G3V251;G3V3K6;G3V5X6;B7ZW38;P0DMR1;O60812;B2RXH8;A0A0G2JPF8;A0A0G2JNQ3;G3V4M8;G3V2H6;B4DY08 P07910;B4DY08 HNRNPC;HNRNPCL3;HNRNPCL4;HNRNPCL1;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 310.49 8.40E-83 0 148062 159182 114149 55244 172198 149905 172301 172968 141458 169045 FALSE FALSE TRUE 137683.6184 146567.8386 158350.5498 128610.8239 150599.3212 131411.2452 129189.4674 133586.9623 153719.6933 126715.0317 1.086561054 1.156672864 1.249658763 1.014961068 1.18848821 1.037061219 1.019527562 1.054231376 1.213113324 1 16.95122815 -5.736470514 1.382781359 1.071674048 1.152803276 0.134438505 0.081179766 0.844165614 3.370801967 0.03092757 0.044363055 1.83E-06 5.736470514 0.081129228 VFIPGLPAPSLTMS(ph)NTMPRPS(ph)TPLDGVSTPKPLSK ddPTM_HeLa_A485_30min_R1 1 VFIPGLPAPSLTMSNTMPRPSTPLDGVSTPKPLSK 35 2 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 2 0 VFIPGLPAPS(0.258)LT(0.303)MS(0.357)NT(0.12)MPRPS(0.5)T(0.46)PLDGVS(0.001)T(0.001)PKPLSK 77.804 0.00030026 80359000 25918 23803 20153 34077 40155 29219 41467 41644 28849 50661 TRUE FALSE FALSE 31683.36968 26586.55379 27608.43334 35938.54022 36157.02721 30748.86166 32607.2367 31430.7437 34638.72968 38032.14505 0.833068175 0.699054806 0.725923644 0.944951703 0.950696501 0.808496645 0.857359916 0.826425742 0.910775073 1 15.21493169 -1.000000224 0.051233095 1.261043288 0.078334612 0.393520631 0.072146721 538.5610828 2.084988896 11.13420716 49.96058823 0.099999948 1.000000224 -1.182708676 VFIPHGLIMDR ddPTM_HeLa_A486_30min_R1 1 VFIPHGLIMDR 11 0 P00492 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase 0 0 115.78 0.0011917 59393000 108930 124190 119200 39313 151820 95516 124270 134930 107940 122080 FALSE FALSE TRUE 101294.5695 114348.7321 165357.4323 91522.65077 132777.3199 83732.20706 93176.33161 104209.3845 117296.3261 91510.37339 1.106918984 1.249571255 1.806980194 1.000134164 1.450953755 0.915002354 1.01820513 1.138771274 1.281781745 1 16.48164767 -6.256142276 24.9380116 1.07614112 1.327797812 0.245250064 0.220994085 657.6528802 3096139.705 0.074191738 0.072090841 5.54E-07 6.256142276 0.251656693 VFLAQK ddPTM_HeLa_A485_30min_R1 2 VFLAQK 6 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70;P30613-2;P30613 P14618 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase;Pyruvate kinase PKLR 0 0 ; ; 132.11 0.015591 193283000 365240 431120 373890 366040 505330 473530 543810 608470 389410 556680 FALSE FALSE TRUE 446486.3779 481535.7338 512207.4699 386035.8383 455017.5709 498323.2986 427620.551 459241.7785 467561.0151 417909.9209 1.068379465 1.152247673 1.225640848 0.923729778 1.088793417 1.192417968 1.02323618 1.098901355 1.118808125 1 18.67283248 -14 0.249069305 0.409807647 1.108204531 0.115550794 0.081085112 426.0395238 4.231418241 128.1702275 0.120722527 1.00E-14 14 0.698396884 VFLAQK ddPTM_HeLa_A486_30min_R1 2 VFLAQK 6 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BR70;P30613-2;P30613 P14618 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase;Pyruvate kinase PKLR 0 0 ; ; 131.72 0.015751 95151000 182667 191117 137434 64758 233431 195303 213599 214626 179764 234326 FALSE FALSE TRUE 169862.9866 175972.1929 190652.1254 150759.8967 204151.9073 171208.5016 160154.271 165760.3451 195346.0883 175649.2444 0.967057884 1.001838599 1.085413866 0.858300855 1.162270342 0.974718122 0.911784571 0.943700872 1.112137367 1 17.42233784 -4.80212437 0.006720679 1.020398841 0.978546785 0 0.088851738 2682839.607 3342.009544 9984.08836 10837.71716 1.58E-05 4.80212437 -0.041852056 VFLENVIR ddPTM_HeLa_A486_30min_R1 2 VFLENVIR 8 0 P62805 P62805 HIST1H4A Histone H4 0 0 ; ; 171.38 0.00095387 190135000 129674 150586 138421 78502 548640 119510 174345 188132 132600 100379 FALSE FALSE TRUE 120584.5222 138653.0169 192021.3182 182756.6233 479824.4553 104766.0713 130722.037 145298.4505 144093.8748 75243.44504 1.602591723 1.842725527 2.552000618 2.428871022 6.376960213 1.392361437 1.737321263 1.93104463 1.915035585 1 16.19927828 VFLIDLNSTHGTFLGHIR ddPTM_HeLa_A486_30min_R1 2 VFLIDLNSTHGTFLGHIR 18 0 Q12972 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 0 ; ; 157.11 2.70E-14 24236300 16878.3 21801 28174 6152.6 34303 20344.6 22846.6 23786 24664 16861.8 FALSE FALSE TRUE 15695.21833 20073.40936 39083.72733 14323.56374 30000.39788 17834.6901 17130.13903 18370.44704 26801.89538 12639.49553 1.24175987 1.588149568 3.092190447 1.133238562 2.373543929 1.411028633 1.355286609 1.453416159 2.120487746 1 13.62565126 -6.348285278 24.99999883 1.489333659 1.894510579 0.112326541 0.585370111 189.2614063 54477.55252 0.202780862 0.178835922 4.48E-07 6.348285278 0.40517692 VFLQDGPARPAS(ph)PEAGNTLR ddPTM_HeLa_A485_30min_R1 1 VFLQDGPARPASPEAGNTLR 20 1 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 VFLQDGPARPAS(1)PEAGNTLR 121.3 2.03E-06 235790000 172070 155800 193080 206960 239030 128720 203300 150130 174310 254230 TRUE FALSE FALSE 210346.3779 174019.4547 264508.3267 218265.7007 215231.3339 135459.5802 159863.2942 113310.3821 209292.4181 190855.1398 1.102125822 0.91178815 1.385911467 1.143619716 1.127720921 0.709750758 0.837615871 0.593698353 1.09660352 1 17.54211851 -6.24626419 23.06369162 0.82152 1.136378834 0.413876663 0.169171033 267.0440088 405860.5443 0.054724918 0.054464987 5.67E-07 6.24626419 0.314858834 VFLQDGPARPAS(ph)PEAGNTLR ddPTM_HeLa_A486_30min_R1 2 VFLQDGPARPASPEAGNTLR 20 1 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 VFLQDGPARPAS(1)PEAGNTLR;VFLQDGPARPAS(1)PEAGNTLR ; 102.27 6.08E-05 541450000 185660 284091 307705 123402 332077 315458 352056 297808 289871 269153 TRUE FALSE FALSE 172646.1927 261578.5945 426856.6166 287286.0924 290424.8062 276539.9993 263967.8651 230003.6195 314997.2517 201755.3369 0.855720574 1.296513879 2.115714128 1.423933051 1.43949008 1.370670058 1.308356295 1.140012567 1.561283367 1 17.62224731 -6.599939116 1.960528634 1.25802598 1.458084753 0.060496472 0.315626585 1.0591796 8.274426917 0.154926664 0.111613808 2.51E-07 6.599939116 0.200058773 VFLQGPAPVGT(ph)PSFNR ddPTM_HeLa_A485_30min_R1 1 VFLQGPAPVGTPSFNR 16 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 VFLQGPAPVGT(0.995)PS(0.005)FNR 116.58 0.00053883 125320000 66527 78482 72158 64359 101380 79438 107570 119670 80304 93212 TRUE FALSE FALSE 81325.70163 87659.7872 98852.24694 67874.7692 91286.25123 83597.25085 84586.79073 90320.74486 96420.27621 69975.96384 1.162194805 1.252712823 1.412660027 0.969972623 1.304537247 1.194656654 1.208797794 1.290739561 1.377905654 1 16.09457183 -7.200479714 24.94030313 1.25074279 1.217351348 0 0.138732142 1590.905514 650883.6466 0.062853143 0.036288276 6.30E-08 7.200479714 -0.033391442 VFLQGPAPVGT(ph)PSFNR ddPTM_HeLa_A486_30min_R1 2 VFLQGPAPVGTPSFNR 16 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 VFLQGPAPVGT(0.956)PS(0.044)FNR;VFLQGPAPVGT(0.9)PS(0.1)FNR ; 127.83 9.35E-05 419700000 402140 436930 351360 162187 529230 399630 470390 480540 330740 466580 TRUE FALSE FALSE 373952.0627 402306.0755 487416.0017 377579.5325 462849.0385 350327.7137 352693.4467 371131.5321 359408.8095 349745.3311 1.069212451 1.150282905 1.393631189 1.079584197 1.323388756 1.001665162 1.008429321 1.061147924 1.027630043 1 18.41594527 -6.282701068 24.80319488 1.022887144 1.203988714 0.484620406 0.094559872 656.7198119 766105.4674 0.032702679 0.028869018 5.22E-07 6.282701068 0.181101571 VFLQGPAPVGTPS(ph)FNR ddPTM_HeLa_A485_30min_R1 1 VFLQGPAPVGTPSFNR 16 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 VFLQGPAPVGT(0.291)PS(0.709)FNR 153.97 3.15E-08 130260000 162150 194230 156160 174900 251740 212010 267840 323110 159360 191720 TRUE FALSE FALSE 198219.7081 216943.5089 213930.0824 184454.3441 226675.8817 223110.5158 210613.7959 243866.7659 191342.0903 143927.7323 1.377216919 1.507308601 1.48637152 1.281576115 1.574928459 1.550156541 1.46333019 1.694369542 1.329431703 1 17.13498508 -8.012763847 24.36470881 0.999999992 1.490413967 0.67261925 0.104772073 268.080215 511734.9521 0.100383927 0.025919019 9.71E-09 8.012763847 0.490413975 VFLWGSFR ddPTM_HeLa_A485_30min_R1 2 VFLWGSFR 8 0 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2 C9JRH2 RCC1 Regulator of chromosome condensation 0 0 ; ; 166.05 0.00014726 95656000 78010 96392 112036 84019 128437 87510 112290 106012 87269 118140 FALSE FALSE TRUE 95363.05537 107664.2059 153482.7786 88608.74522 115649.3613 92091.88828 88298.32418 80012.39078 104783.0878 88689.87221 1.075241772 1.213940253 1.730555866 0.999085273 1.303974833 1.038358563 0.9955852 0.902159275 1.181454942 1 16.43648175 -6.173300633 1.574478697 1.006745142 1.294344043 0.267206999 0.194089802 0.509833338 2.524999722 0.082664258 0.08029778 6.71E-07 6.173300633 0.287598902 VFLWGSFR ddPTM_HeLa_A486_30min_R1 2 VFLWGSFR 8 0 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2 C9JRH2 RCC1 Regulator of chromosome condensation 0 0 ; ; 180.01 3.20E-06 93250000 84474 103680 99748 41308 116432 97991 119533 111087 92578 103973 FALSE FALSE TRUE 78552.80882 95464.0192 138373.0969 96167.11159 101828.0129 85901.86672 89624.57911 85794.91511 100602.7356 77937.48405 1.007895107 1.224879406 1.775437052 1.233900642 1.306534514 1.102189374 1.149954739 1.100817099 1.290813231 1 16.25002974 -6.171230532 3.937735793 1.136244063 1.331127037 0.177263777 0.191900825 0.437894274 12.48761297 0.068370256 0.067907004 6.74E-07 6.171230532 0.194882974 VFMQQLASALQFLHER ddPTM_HeLa_A485_30min_R1 2 VFMQQLASALQFLHER 16 0 Q6PHR2-2;Q6PHR2-3;Q6PHR2;Q6PHR2-4 Q6PHR2-2 ULK3 Serine/threonine-protein kinase ULK3 0 0 ; ; 210.09 4.12E-19 17373000 13854.9 19726.9 22771.1 15362 22617.1 18094.7 24402.3 21485.6 14678.9 23807.4 FALSE FALSE TRUE 16936.87471 22033.78935 31195.07747 16201.18716 20365.26211 19042.11051 19188.54926 16216.22291 17624.82059 17872.65332 0.947641875 1.232821392 1.745408301 0.906479126 1.139464955 1.065432769 1.073626222 0.907320397 0.986133411 1 14.12546621 VFMQQLASALQFLHER ddPTM_HeLa_A486_30min_R1 2 VFMQQLASALQFLHER 16 0 Q6PHR2-2;Q6PHR2-3;Q6PHR2;Q6PHR2-4 Q6PHR2-2 ULK3 Serine/threonine-protein kinase ULK3 0 0 ; ; 199.08 3.07E-18 15480700 16066.7 17090.7 17087.6 5671.4 21217.8 15385.7 18015.5 18058.2 17790.7 19238.3 FALSE FALSE TRUE 14940.5073 15736.37069 23704.37634 13203.30582 18556.46568 13487.56876 13507.83135 13946.74207 19332.8122 14420.90446 1.036031224 1.091219398 1.643751015 0.91556711 1.28677544 0.935278977 0.936684061 0.967119788 1.340610241 1 13.81587403 -6.260626914 24.99493831 1.027680193 1.198365003 0.12373521 0.210515904 157.2959159 4839178.922 0.071390122 0.067415318 5.49E-07 6.260626914 0.17068481 VFNDMK ddPTM_HeLa_A485_30min_R1 1 VFNDMK 6 0 P23528;E9PP50;E9PK25;E9PS23;Q9Y281;G3V2U0;F8WDN3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 0 108.24 0.03389 46132000 127750 122510 109310 135490 152290 144660 194840 206860 116140 200080 FALSE FALSE TRUE 156167.5468 136836.4788 149748.3178 142891.4756 137127.4729 152234.1739 153210.8423 156127.2607 139448.2327 150203.7382 1.039704795 0.911005814 0.996967982 0.951317706 0.912943143 1.013517877 1.020020168 1.039436585 0.928393889 1 17.19656119 -6.310692362 24.99868894 1.003972659 0.960839345 0.150974138 0.044415523 652.5110128 331184.3188 0.015056221 0.013278367 4.89E-07 6.310692362 -0.043133314 VFNVFCLYGNVEK ddPTM_HeLa_A485_30min_R1 2 VFNVFCLYGNVEK 13 0 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;M0R076;M0QYT0 P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ; ; 231.7 4.61E-29 41984000 53029 54904 49766 57807 74952 62728 86627 88654 49408 88298 FALSE FALSE TRUE 64825.1181 61324.5452 68176.51434 60964.85003 67489.51571 66012.34108 68118.43377 66911.4675 59323.7324 66286.9336 0.977947155 0.925137759 1.028506082 0.919711423 1.018142069 0.995857517 1.027629882 1.009421674 0.894953638 1 16.0164369 -5.792565565 24.99980294 0.993546155 0.964824948 0.086165621 0.044298942 515.7495447 414235.1083 0.013474085 0.01527973 1.61E-06 5.792565565 -0.028721206 VFNVFCLYGNVEK ddPTM_HeLa_A486_30min_R1 2 VFNVFCLYGNVEK 13 0 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;M0R076;M0QYT0 P14866;M0QYT0 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ; ; 234.61 3.83E-29 48609000 52318 63168 48815 22862 68345 67698 74813 71451 60681 79262 FALSE FALSE TRUE 48650.77837 58162.33763 67717.47531 53223.89138 59772.53281 59346.10906 56093.99611 55183.16706 65940.87794 59414.27929 0.81883983 0.978928606 1.13975085 0.895809762 1.006029754 0.998852629 0.944116411 0.928786274 1.109848991 1 15.85852208 -4.274733412 5.110018837 0.998172287 0.812070877 0.369585584 0.071345032 0.160678572 13.44521403 0.017381905 0.102561781 5.31E-05 4.274733412 -0.186101411 VFPEPT(ph)ESGDEGEELGLPLLSTR ddPTM_HeLa_A485_30min_R1 1 VFPEPTESGDEGEELGLPLLSTR 23 0 Q9BUR4;E9PMG4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 VFPEPT(0.539)ES(0.461)GDEGEELGLPLLSTR 76.704 9.21E-05 0 8048.4 8588.3 9050.4 8253 12827 8244.2 9969 10701 7833 9228.9 TRUE FALSE FALSE 9838.738813 9592.626977 12398.51958 8703.840492 11549.89884 8675.853564 7839.041711 8076.562971 9405.011251 6928.305075 1.42007875 1.384556089 1.789545848 1.256272696 1.667059795 1.25223319 1.131451578 1.165734315 1.357476489 1 12.75828674 -6.432071676 5.953488956 1.17913557 1.498098083 0.506397012 0.160499317 0.19864694 10.52106264 0.054723459 0.047837905 3.70E-07 6.432071676 0.318962513 VFPEPT(ph)ESGDEGEELGLPLLSTR ddPTM_HeLa_A486_30min_R1 2 VFPEPTESGDEGEELGLPLLSTR 23 0 Q9BUR4;E9PMG4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 VFPEPT(0.585)ES(0.415)GDEGEELGLPLLSTR;VFPEPT(0.534)ES(0.466)GDEGEELGLPLLSTR ; 116.21 0.00013494 108979000 42224 59757 57131 23516 73383 58959 61817 69159 53063 59344 TRUE FALSE FALSE 39264.31564 55021.63769 79253.65322 54746.43643 64178.61987 51685.23803 46349.73277 53413.00543 57662.54356 44483.87614 0.882663991 1.236889464 1.781626515 1.230702924 1.44273893 1.161887014 1.04194456 1.200727321 1.296257174 1 15.44099488 -6.368231681 7.485142082 1.144955127 1.331531146 0.132053722 0.222099198 0.595607104 37.09448764 0.081359998 0.071614969 4.28E-07 6.368231681 0.186576018 VFPEPTES(ph)GDEGEELGLPLLSTR ddPTM_HeLa_A485_30min_R1 6 VFPEPTESGDEGEELGLPLLSTR 23 0 Q9BUR4;E9PMG4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 VFPEPT(0.127)ES(0.873)GDEGEELGLPLLSTR;VFPEPT(0.116)ES(0.884)GDEGEELGLPLLSTR;VFPEPT(0.103)ES(0.897)GDEGEELGLPLLSTR;VFPEPT(0.17)ES(0.83)GDEGEELGLPLLSTR;VFPEPT(0.127)ES(0.873)GDEGEELGLPLLSTR;VFPEPT(0.151)ES(0.849)GDEGEELGLPLLSTR ;;;;; 164.79 1.93E-14 378417000 138784 162676 182698 152255 213791 182528 220430 237560 157273 205033 TRUE FALSE FALSE 169656.022 181699.5431 250285.5929 160572.3051 192505.2174 192084.8838 173333.3298 179298.0375 188836.2485 153922.0465 1.102220416 1.180464705 1.626054218 1.043205368 1.250666956 1.247936136 1.126111131 1.164862615 1.226830417 1 17.23184036 -9.277856477 0.293853285 0.922157438 1.263701907 0.169681047 0.149236363 13.50559763 1.490074259 1.301790308 0.191430449 5.27E-10 9.277856477 0.341544469 VFPEPTES(ph)GDEGEELGLPLLSTR ddPTM_HeLa_A486_30min_R1 3 VFPEPTESGDEGEELGLPLLSTR 23 0 Q9BUR4;E9PMG4 Q9BUR4 WRAP53 Telomerase Cajal body protein 1 1 0 VFPEPT(0.095)ES(0.905)GDEGEELGLPLLSTR;VFPEPT(0.171)ES(0.829)GDEGEELGLPLLSTR;VFPEPT(0.114)ES(0.886)GDEGEELGLPLLSTR ;; 217.89 4.60E-38 317168000 120055 157873 147243 59143.3 203391 163902 183588 174196 143196 161100 TRUE FALSE FALSE 111639.7645 145362.5685 204259.4329 137688.5913 177879.8042 143681.4377 137652.3406 134535.3735 155608.3446 120759.5114 0.924480094 1.203735978 1.691456271 1.140188377 1.473008645 1.189814665 1.139888188 1.114076828 1.288580442 1 16.8817773 -6.505054298 23.54671663 1.147958235 1.299840613 0.110522791 0.200461908 817.8541161 1080418.057 0.072226 0.062295731 3.13E-07 6.505054298 0.151882379 VFPLS(ph)PASNLR ddPTM_HeLa_A485_30min_R1 2 VFPLSPASNLR 11 0 A0A2R8YH03;Q5VWN6;J3KPH3 A0A2R8YH03 FAM208B Protein FAM208B 1 0 VFPLS(1)PASNLR;VFPLS(1)PASNLR ; 202.69 1.01E-14 144379000 294510 316380 297480 314170 376540 294440 382340 367990 304590 395000 TRUE FALSE FALSE 360022.7335 353377.8889 407530.2312 331332.3116 339050.3555 309856.4231 300649.9356 277739.8755 365718.4191 296533.7694 1.214103656 1.191695265 1.374313057 1.117351026 1.143378564 1.044927948 1.013880936 0.936621404 1.2333112 1 18.17783688 -5.764406006 1.696881226 1.042030419 1.249540058 0.48713419 0.08959117 0.29913003 1.782933264 0.031456731 0.041921802 1.72E-06 5.764406006 0.207509638 VFPLS(ph)PASNLR ddPTM_HeLa_A486_30min_R1 2 VFPLSPASNLR 11 0 A0A2R8YH03;Q5VWN6;J3KPH3 A0A2R8YH03 FAM208B Protein FAM208B 1 0 VFPLS(1)PASNLR;VFPLS(1)PASNLR ; 182.43 1.78E-10 129018000 263860 283880 220630 88037 281150 247280 281230 259700 223781 268920 TRUE FALSE FALSE 245364.7766 261384.3149 306063.8447 204954.5851 245885.5454 216773.1078 210863.2795 200571.9792 243178.5173 201580.6816 1.217203824 1.296673435 1.518319326 1.016737236 1.21978725 1.075366479 1.046049045 0.994996036 1.206358245 1 17.62099786 -5.277766173 24.97596804 1.083920064 1.339326333 0.586496187 0.101584288 547.7605016 837937.2469 0.028431631 0.042314264 5.28E-06 5.277766173 0.255406269 VFPSEITDTVAASTAQSPGMNLS(ph)HSASSLSLQQAFSELRR ddPTM_HeLa_A485_30min_R1 1 VFPSEITDTVAASTAQSPGMNLSHSASSLSLQQAFSELRR 40 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 VFPSEITDTVAASTAQS(0.009)PGMNLS(0.92)HS(0.03)AS(0.007)S(0.003)LS(0.007)LQQAFS(0.024)ELRR 135.75 7.67E-08 141600000 10760 18296 17144 11453 21274 13656 25246 33648 21170 18606 TRUE FALSE FALSE 13153.52488 20435.55805 23486.27902 12078.64839 19155.88586 14371.00704 19851.98586 25395.77524 25418.62482 13967.86662 0.941698918 1.46304075 1.681450694 0.864745399 1.371425314 1.02886199 1.421261128 1.818157056 1.819792923 1 13.76982407 -7.001705734 24.76394884 1.615326842 1.245185576 0.164115219 0.316059009 86.23324491 1251946.393 0.130865733 0.086734487 9.96E-08 7.001705734 -0.370141266 VFPSEITDTVAASTAQSPGMNLSHS(ph)ASSLSLQQAFSELRR ddPTM_HeLa_A485_30min_R1 1 VFPSEITDTVAASTAQSPGMNLSHSASSLSLQQAFSELRR 40 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 VFPSEITDTVAASTAQSPGMNLS(0.002)HS(0.963)AS(0.026)S(0.007)LS(0.002)LQQAFSELRR 252.87 2.02E-65 102520000 27139 53463 53167 28524 75573 44524 77404 98555 79002 61072 TRUE FALSE FALSE 33175.97692 59715.03278 72835.68576 30082.19389 68048.68677 46855.20779 60866.00307 74384.23172 94856.97675 45847.87435 0.723609925 1.302460226 1.588638226 0.656130613 1.484227737 1.021971214 1.32756434 1.622413968 2.068950373 1 15.48456723 -7.114714009 3.430875878 1.633115921 1.153496528 0.208404959 0.369332307 0.353551885 7.642650841 0.18351234 0.099689102 7.68E-08 7.114714009 -0.479619393 VFPSEITDTVAASTAQSPGMNLSHS(ph)ASSLSLQQAFSELRR ddPTM_HeLa_A486_30min_R1 1 VFPSEITDTVAASTAQSPGMNLSHSASSLSLQQAFSELRR 40 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 VFPSEITDTVAASTAQSPGMNLS(0.185)HS(0.748)AS(0.046)S(0.009)LS(0.012)LQQAFSELRR 177.69 1.03E-16 236140000 20541 16856 21197 2740.2 24976 23752 28348 26727 15596 15004 TRUE FALSE FALSE 19101.18197 15520.26917 29405.04608 6379.324082 21843.27719 20821.71973 21255.03057 20641.84555 16947.87384 11246.90074 1.69835072 1.379959647 2.614502142 0.567207289 1.942159684 1.851329554 1.889856686 1.835336332 1.506892808 1 13.45723988 -5.174119956 24.17140805 1.59519537 1.845823667 0.090029448 0.50783504 202.3047555 55994.43572 0.134871308 0.233603995 6.70E-06 5.174119956 0.250628297 VFQFLNAK ddPTM_HeLa_A485_30min_R1 2 VFQFLNAK 8 0 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 0 ; ; 137.77 0.00096552 37476000 49440 51562.2 46332 45668 68661 52205 69634 74968 49152.4 76889 FALSE FALSE TRUE 60437.75743 57591.95076 63472.13484 48162.7272 61824.86976 54938.37308 54756.12704 56581.98045 59016.83583 57721.98734 1.047049144 0.997747192 1.099617975 0.834391355 1.071080062 0.951775495 0.948618188 0.980250041 1.0224325 1 15.81683335 VFQFLNAK ddPTM_HeLa_A486_30min_R1 1 VFQFLNAK 8 0 C9JXB8;C9JNW5;P83731 C9JXB8 RPL24 60S ribosomal protein L24 0 0 129.4 0.0029587 20210000 17285 20924 16415 9497.7 24301 19547 21935 23294 17807 22749 FALSE FALSE TRUE 16073.41076 19265.90604 22771.32761 22111.12559 21252.94198 17135.48988 16446.631 17990.4647 19350.5251 17052.50233 0.942583701 1.129799349 1.335365753 1.296649909 1.246323945 1.004866591 0.964470239 1.055004383 1.134761616 1 14.05769584 -6.26544021 24.87543435 1.031048939 1.200776834 0.343857292 0.108855099 397.1051268 2469020.487 0.04105227 0.037580253 5.43E-07 6.26544021 0.169727895 VFS(ph)LSEADSHGGHWV ddPTM_HeLa_A485_30min_R1 3 VFSLSEADSHGGHWV 15 0 H7BXG1 H7BXG1 CLEC16A 1 0 VFS(1)LSEADSHGGHWV;VFS(0.987)LS(0.013)EADSHGGHWV;VFS(0.539)LS(0.461)EADSHGGHWV ;; 251.87 1.24E-42 181084000 126875 126351 144241 111613 182609 117367 146690 144882 124645 164811 TRUE FALSE FALSE 155097.906 141126.6503 197601.7483 117710.1356 164427.8068 123512.1546 115348.4832 109349.4623 149660.1082 123726.6508 1.253552933 1.140632591 1.597083142 0.95137252 1.328960298 0.99826637 0.932284858 0.883798774 1.20960284 1 16.91679677 -6.274143727 23.17712639 0.992996325 1.250216253 0.347791561 0.170425867 328.2348789 598811.0221 0.057876926 0.051450085 5.32E-07 6.274143727 0.257219929 VFS(ph)LSEADSHGGHWV ddPTM_HeLa_A486_30min_R1 3 VFSLSEADSHGGHWV 15 0 H7BXG1 H7BXG1 CLEC16A 1 0 VFS(0.802)LS(0.198)EADSHGGHWV;VFS(1)LSEADSHGGHWV;VFS(0.996)LS(0.004)EADSHGGHWV ;; 323.37 1.09E-78 217908000 191493 218800 191089 29196 260994 217955 228089 230530 191602 162177 TRUE FALSE FALSE 178070.3296 201461.4911 265083.7783 67969.76348 228257.6988 191065.9281 171018.7197 178043.3514 208210.2156 121566.8236 1.464793801 1.657207823 2.180560209 0.559114415 1.877631512 1.571694665 1.406787762 1.46457188 1.712722349 1 16.89139004 -10.77213039 2.714054266 0.869701239 1.541259457 0.145754596 0.394973539 113592935 86599935.51 98416949.97 0.094798976 1.69E-11 10.77213039 0.671558218 VFS(ph)PVIR ddPTM_HeLa_A485_30min_R1 2 VFSPVIR 7 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 VFS(1)PVIR;VFS(1)PVIR ; 99.802 0.0045976 105375000 42607 49631 46810 51659 53673 43999 51262 50571 42561 68681 TRUE FALSE FALSE 52084.78016 55434.91372 64126.96693 54481.00036 48329.12766 46302.7196 40309.45493 38168.38296 51102.60231 51560.09068 1.010176271 1.075151595 1.243732625 1.056650592 0.937335971 0.8980341 0.781795656 0.740269896 0.991127084 1 15.65396718 -5.846652949 2.351287592 0.861485204 1.111463666 0.538266221 0.093856186 0.212426097 2.400573837 0.032467503 0.039129063 1.42E-06 5.846652949 0.249978462 VFS(ph)PVIR ddPTM_HeLa_A486_30min_R1 2 VFSPVIR 7 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 VFS(1)PVIR;VFS(1)PVIR ; 87.639 0.0073566 51669000 53100 68705 54011 22920 70153 64631 65083 64263 55176 61692 TRUE FALSE FALSE 49377.96421 63260.56558 74925.50566 53358.91831 61353.75659 56657.48434 48798.54502 49631.71775 59958.70011 46243.92165 1.067771989 1.367975797 1.620223869 1.153857986 1.326742075 1.225187707 1.05524236 1.073259273 1.296574727 1 15.49697613 -6.516230583 3.510120599 1.112858299 1.31859309 0.272811996 0.153488273 0.329864672 8.671852508 0.061298306 0.049302655 3.05E-07 6.516230583 0.205734791 VFSATLGLVDIVK ddPTM_HeLa_A486_30min_R1 1 VFSATLGLVDIVK 13 0 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 125.97 0.00064823 5458200 10961 12223 8927.7 4443.9 13550 9908.8 14350 15633 10323 12947 FALSE FALSE TRUE 10192.6905 11254.40496 12384.74453 10345.62378 11850.43265 8686.353001 10759.47822 12073.70717 11217.80595 9704.986929 1.050252883 1.159651739 1.276121712 1.066011099 1.221066318 0.895040155 1.108654581 1.244072481 1.155880583 1 13.24451055 VFSGLVS(ph)TGLK ddPTM_HeLa_A485_30min_R1 1 VFSGLVSTGLK 11 0 P13639 P13639 EEF2 Elongation factor 2 1 0 VFSGLVS(0.982)T(0.018)GLK 96.82 0.0018414 33856000 33737 46537 36332 45287 46864 42702 54231 59513 42806 62526 TRUE FALSE FALSE 41241.67926 51979.09733 49772.7187 47760.91414 42198.05561 44937.81069 42644.10382 44917.34344 51396.77156 46939.41891 0.878615037 1.10736559 1.060360777 1.01750118 0.898989732 0.957357627 0.908492368 0.956921591 1.09495969 1 15.51851236 -3.94808951 9.596532604 0.993893924 0.515633589 0.215611268 0.068633049 9929.445557 83602.70397 0.018436723 76015.42806 0.000112697 3.94808951 -0.478260334 VFSGLVS(ph)TGLK ddPTM_HeLa_A486_30min_R1 1 VFSGLVSTGLK 11 0 P13639 P13639 EEF2 Elongation factor 2 1 0 VFSGLVS(0.986)T(0.014)GLK 122.42 8.98E-05 44715000 60209 54432 45722 31759 65633 53152 64665 69280 48767 70358 TRUE FALSE FALSE 55988.66002 50118.61008 63426.78288 73936.55701 57400.69714 46594.64665 48485.13304 53506.45637 52994.16283 52739.89885 1.061599685 0.950297804 1.20263376 1.401909344 1.088373288 0.883480015 0.919325484 1.014534679 1.004821093 1 15.68660718 -6.010495792 24.96887474 0.965122053 1.155783484 0.388838118 0.113077266 589.4779267 1402336.173 0.040283894 0.042927476 9.76E-07 6.010495792 0.190661431 VFSGLVSTGLK ddPTM_HeLa_A485_30min_R1 1 VFSGLVSTGLK 11 0 P13639 P13639 EEF2 Elongation factor 2 0 0 171.85 4.21E-06 16505000 32296 29894 30705 32713 48522 27035 35665 35238 29237 46163 FALSE FALSE TRUE 39480.13378 33389.84326 42064.05724 34500.02836 43690.97931 28450.5108 28044.88139 26595.82525 35104.59772 34655.41367 1.13921981 0.963481307 1.213780267 0.995516276 1.26072595 0.820954298 0.80924965 0.767436381 1.01296144 1 15.08079312 -6.279194148 24.91349185 0.863030693 1.105052709 0.516483382 0.111492091 603.8894553 847375.0348 0.037294933 0.03296213 5.26E-07 6.279194148 0.242022016 VFSGLVSTGLK ddPTM_HeLa_A486_30min_R1 1 VFSGLVSTGLK 11 0 P13639 P13639 EEF2 Elongation factor 2 0 0 130.98 0.0022291 17574000 34000 39263 26677 14206 42612 34892 40514 39004 29132 39035 FALSE FALSE TRUE 31616.77558 36151.65689 37007.04883 33072.28593 37267.20562 30587.3798 30376.96869 30123.64065 31657.18522 29260.38192 1.080531883 1.235515551 1.264749344 1.130275265 1.273640437 1.045351352 1.038160362 1.029502647 1.081912919 1 14.83666098 -6.281460451 23.7870634 1.040777764 1.199148747 0.650454569 0.057877748 269.6301432 320346.5351 0.01969481 0.017396059 5.23E-07 6.281460451 0.158370983 VFSNGHLGSEEYDVPPRLS(ph)PPPPVTTLLPSIK ddPTM_HeLa_A485_30min_R1 2 VFSNGHLGSEEYDVPPRLSPPPPVTTLLPSIK 32 1 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2;A0A2R8Y582 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 VFSNGHLGSEEYDVPPRLS(0.996)PPPPVT(0.002)T(0.002)LLPSIK;VFSNGHLGSEEYDVPPRLS(0.641)PPPPVT(0.178)T(0.178)LLPS(0.002)IK ; 155.68 3.32E-10 743650000 210713 273729 269372 164341 369820 280323 359630 381620 254238 292550 TRUE FALSE FALSE 257585.3799 305739.2254 369023.9123 173318.5327 332999.4223 295000.2788 282792.1126 288027.0966 305261.2346 219622.669 1.172854246 1.392111419 1.680263308 0.789165042 1.516234293 1.34321416 1.287627156 1.31146342 1.389935001 1 17.74466745 -10.14576019 4.660798551 0.999966331 1.322608322 0.160284601 0.219893651 24897097.24 54196721.22 5407.021485 0.050893753 7.15E-11 10.14576019 0.322641991 VFSNGHLGSEEYDVPPRLS(ph)PPPPVTTLLPSIK ddPTM_HeLa_A486_30min_R1 3 VFSNGHLGSEEYDVPPRLSPPPPVTTLLPSIK 32 1 Q13191;A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2;A0A2R8Y582 Q13191 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 VFS(0.001)NGHLGS(0.001)EEY(0.004)DVPPRLS(0.982)PPPPVT(0.006)T(0.006)LLPSIK;VFS(0.002)NGHLGS(0.002)EEY(0.016)DVPPRLS(0.945)PPPPVT(0.017)T(0.017)LLPSIK;VFSNGHLGSEEYDVPPRLS(0.941)PPPPVT(0.03)T(0.03)LLPSIK ;; 134.77 8.58E-07 761532000 239746 288083 218186 45524 316144 257844 290804 281865 248701 209278 TRUE FALSE FALSE 222941.0434 265254.2539 302673.4624 105982.1727 276490.2716 226033.8288 218041.7634 217690.4926 270258.6029 156873.4266 1.421152379 1.690880728 1.92941194 0.675590347 1.762505464 1.440867543 1.389921595 1.387682396 1.722781281 1 17.25924146 -10.95450155 2.843050559 0.638871878 1.486448266 0.170834314 0.32449563 49135895.26 23720573.22 115383454.5 0.07869556 1.11E-11 10.95450155 0.847576388 VFSWGFGGYGR ddPTM_HeLa_A485_30min_R1 2 VFSWGFGGYGR 11 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 0 ; ; 270.78 6.85E-46 217050000 79441 105248 121086 84021 130995 96884 138603 127095 89500 122682 FALSE FALSE TRUE 97112.37638 117555.8381 165880.7502 88610.85448 117952.6778 101956.6964 108989.3368 95924.75197 107461.8291 92099.63519 1.054427373 1.27639852 1.801101056 0.962119495 1.28070733 1.107026062 1.183385108 1.041532377 1.166799725 1 16.49090782 VFSWGFGGYGR ddPTM_HeLa_A486_30min_R1 2 VFSWGFGGYGR 11 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 0 ; ; 265.55 1.85E-36 171287000 51826.2 113825 125128.4 37980.8 175619 102775.4 121647 126727 117002 85452 FALSE FALSE TRUE 48193.45101 104805.0925 173581.4675 88421.22184 153591.2274 90096.01609 91209.63395 97874.02853 127143.8276 64054.263 0.752384756 1.636192309 2.709912805 1.380411197 2.397829906 1.406557688 1.423943227 1.527986178 1.984939356 1 15.96700697 VFVHYTGWLLDGTK ddPTM_HeLa_A486_30min_R1 2 VFVHYTGWLLDGTK 14 0 Q02790;F5H1U3 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ; ; 243.88 1.03E-30 164083000 265020 333650 273930 46856 350950 323480 353320 323080 330520 234050 FALSE FALSE TRUE 246443.4666 307210.3589 380003.0321 109083.136 306930.5785 283572.3265 264915.599 249521.7368 359169.7397 175442.3566 1.404697653 1.751061516 2.165970861 0.621760549 1.749466802 1.616327619 1.509986551 1.422243417 2.047223639 1 17.42063757 VFVHYTGWLLDGTKFDSSLDRK ddPTM_HeLa_A486_30min_R1 2 VFVHYTGWLLDGTKFDSSLDRK 22 2 Q02790;F5H1U3 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ; ; 191.59 1.71E-24 26717000 68705 42797 34666 11562.2 66698 43938 64497 62750 37633 55520 FALSE FALSE TRUE 63889.13429 39405.60986 48089.60359 26917.38592 58332.11491 38517.37629 48359.16842 48463.19482 40895.05874 41617.43063 1.53515326 0.9468535 1.155515919 0.646781541 1.401627011 0.925510674 1.161993129 1.164492716 0.982642564 1 15.34490028 -4.253705319 24.35850358 1.050380378 1.5351536 0.379240847 0.188742049 690.5644562 2174866.008 0.043932995 0.452720913 5.58E-05 4.253705319 0.484773222 VFVTPQAPLEAIQAYLAGHYR ddPTM_HeLa_A486_30min_R1 2 VFVTPQAPLEAIQAYLAGHYR 21 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 0 0 ; ; 135.08 2.05E-09 9010600 2425.9 4032.3 3378.5 1456.57 3374.4 4024.9 3596.4 3547.6 2966.7 3375.6 FALSE FALSE TRUE 2255.856937 3712.765863 4686.745679 3390.968571 2951.151287 3528.34876 2696.542681 2739.888924 3223.855945 2530.327789 0.891527551 1.467306283 1.852228672 1.340130155 1.166311851 1.394423591 1.065689075 1.082819758 1.27408629 1 11.30510857 -6.377423633 1.220630307 1.114826108 1.408082932 0.175155326 0.240164335 0.802906079 2.446314467 0.133368077 0.10838264 4.19E-07 6.377423633 0.293256824 VFVVHIPR ddPTM_HeLa_A485_30min_R1 2 VFVVHIPR 8 0 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 ; ; 101.69 0.0042192 54256000 129664 153869 156073 144196 196243 152283 179987 168558 167003 253610 FALSE FALSE TRUE 158507.3095 171862.6411 213810.8974 152073.0624 176704.3579 160256.3024 141531.3071 127218.8862 200518.9703 190389.6943 0.832541436 0.902688781 1.123017179 0.798746292 0.928119342 0.84172782 0.743376933 0.668202587 1.053202858 1 17.53859586 VFVVHIPR ddPTM_HeLa_A486_30min_R1 1 VFVVHIPR 8 0 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 81.297 0.020364 34209000 42269 43914 38433 13102 50618 43555 45644 50038 43848 46124 FALSE FALSE TRUE 39306.16138 40434.09471 53315.28687 30502.11814 44269.01845 38181.62693 34223.38843 38645.43972 47648.77994 34574.25018 1.136862294 1.169485802 1.542051862 0.882220669 1.280404295 1.104337093 0.989851934 1.11775207 1.378158013 1 15.07741034 -5.270075826 24.99263141 1.114604917 1.271468575 0.184706041 0.167779539 1172.800383 3393912.234 0.046485695 0.070186063 5.37E-06 5.270075826 0.156863658 VGALDVPASQFLGS(ph)ATSPGPR ddPTM_HeLa_A485_30min_R1 1 VGALDVPASQFLGSATSPGPR 21 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 VGALDVPAS(0.075)QFLGS(0.377)AT(0.274)S(0.274)PGPR 64.52 0.0019644 0 20669 22027 23845 22116 31152 26257 30890 26328 29984 28191 TRUE FALSE FALSE 25266.74774 24602.86604 32666.25777 23324.14108 28050.3975 27631.77592 24290.09915 19871.01672 36001.51377 21163.50252 1.193883088 1.162513909 1.543518505 1.102092674 1.325413763 1.305633408 1.147735311 0.938928549 1.701113213 1 14.36929079 -6.756022249 24.92078686 1.191854981 1.274213859 0.026898395 0.220626346 575.417052 2647146.855 0.082468277 0.061990439 1.75E-07 6.756022249 0.082358878 VGALDVPASQFLGSATS(ph)PGPR ddPTM_HeLa_A486_30min_R1 1 VGALDVPASQFLGSATSPGPR 21 0 P49815-5;A0A2R8Y7X5;P49815-3;H3BMQ0;A0A2R8Y5F1;A0A2R8YGU4;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8YDZ2;X5D2U8;A0A2R8Y6C9;P49815-6;P49815-7;P49815-2;P49815-4;P49815 P49815-5 TSC2 Tuberin 1 0 VGALDVPAS(0.001)QFLGS(0.002)AT(0.172)S(0.825)PGPR 96.633 0.00066831 55049000 61086 81981 71201 27101 92186 72364 89031 66463 54991 65723 TRUE FALSE FALSE 56804.18685 75484.52699 98771.93403 63092.49761 80623.17228 63436.46542 66754.50213 51330.82578 59757.66416 49265.53302 1.153020852 1.53219751 2.004889179 1.280662032 1.636502588 1.287643948 1.35499401 1.041921657 1.212971027 1 15.58829105 -6.864823095 1.073832701 1.066633065 1.54159043 0.395801224 0.223650828 0.537579517 1.198785228 0.167871884 0.087089281 1.37E-07 6.864823095 0.474957365 VGDGDLS(ph)AEEIPENEVSLR ddPTM_HeLa_A485_30min_R1 3 VGDGDLSAEEIPENEVSLR 19 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR ;; 334.98 5.09E-102 1216690000 229990 225220 206300 326690 327483.4 237220 314520 298840 207930 405460 TRUE FALSE FALSE 281150.482 251557.5198 282618.9549 344536.2475 294878.0028 249640.4724 247320.2326 225549.0214 249659.6438 304386.2839 0.92366344 0.826441706 0.928487812 1.131904641 0.968762452 0.820143632 0.81252095 0.740996008 0.820206615 1 18.21554382 -6.264429269 23.61326865 0.820944898 0.956923022 0.270258538 0.093927408 155.6841084 1229538.914 0.034074684 0.031381597 5.44E-07 6.264429269 0.135978123 VGDGDLS(ph)AEEIPENEVSLR ddPTM_HeLa_A486_30min_R1 5 VGDGDLSAEEIPENEVSLR 19 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR ;;;; 281.49 1.13E-69 1934780000 1061344 1257363 965139 520332 1342800 1361370 1575470 1432240 1154475 1440370 TRUE FALSE FALSE 986949.2664 1157724.977 1338866.668 1211359.192 1174373.503 1193418.011 1181270.742 1106150.218 1254545.823 1079691.977 0.914102622 1.072273391 1.240045029 1.121948869 1.08769309 1.105331925 1.094081245 1.02450536 1.161947898 1 20.04218836 -9.31394051 14.07078476 0.999912031 1.0944608 0.103022646 0.080364247 0 0 0.07906274 0.019175531 4.85E-10 9.31394051 0.094548768 VGDGDLS(ph)AEEIPENEVSLRR ddPTM_HeLa_A485_30min_R1 3 VGDGDLSAEEIPENEVSLRR 20 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VGDGDLS(1)AEEIPENEVSLRR;VGDGDLS(1)AEEIPENEVSLRR;VGDGDLS(1)AEEIPENEVSLRR ;; 213.14 2.74E-27 2346060000 552915 663101 603532 675020 887550 777083 1011850 1120410 653808 808130 TRUE FALSE FALSE 675909.0342 740644.8937 826803.6019 711894.6334 799182.4056 817769.8643 795659.9814 845627.6908 785021.2685 606678.0635 1.114114841 1.220820297 1.362837478 1.173430648 1.317308889 1.347946981 1.311502804 1.393865613 1.293966793 1 19.21057162 -4.420207143 3.428335385 1.291229231 1.115015053 0.153294874 0.10919401 0.396926614 7.841879716 0.026040663 0.139819666 3.80E-05 4.420207143 -0.176214178 VGDGDLS(ph)AEEIPENEVSLRR ddPTM_HeLa_A486_30min_R1 4 VGDGDLSAEEIPENEVSLRR 20 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VGDGDLS(1)AEEIPENEVSLRR;VGDGDLS(1)AEEIPENEVSLRR;VGDGDLS(0.998)AEEIPENEVS(0.002)LRR;VGDGDLS(1)AEEIPENEVSLRR ;;; 224.99 9.49E-36 3565450000 1087183 1229776 1015824 567184 1603545 1128410 1643388 1554999 951130 1559306 TRUE FALSE FALSE 1010977.086 1132324.071 1409178.258 1320433.016 1402413.434 989198.247 1232194.94 1200959.673 1033574.714 1168845.628 0.864936362 0.968754165 1.205615373 1.129689827 1.199827761 0.846303586 1.054198186 1.02747501 0.88426965 1 20.15665297 -6.260756274 24.99957608 0.969900785 1.078362764 0.196525761 0.111840106 119.548096 4375183.689 0.040496697 0.038201733 5.49E-07 6.260756274 0.108461978 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_HeLa_A485_30min_R1 4 VGDPPQPLPEEPMEVQGAERASPEPQR 27 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR ;;; 147.25 2.44E-09 3449800000 206410 190348 201567 216681 261970 192683 279841 227718 194524 327174 TRUE FALSE FALSE 252325.1924 212607.5428 276135.0212 228517.7344 235887.347 202771.5839 220050.6843 171869.8035 233563.1825 245615.543 1.027317691 0.86561111 1.124257113 0.930387921 0.960392588 0.825564952 0.895915143 0.699751332 0.950929976 1 17.90604233 -6.061031965 2.417674895 0.856809091 0.988718136 0.219899622 0.097818923 0.391899859 4.53932894 0.033481471 0.035141696 8.69E-07 6.061031965 0.131909044 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_HeLa_A486_30min_R1 5 VGDPPQPLPEEPMEVQGAERASPEPQR 27 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR ;;;; 189.72 9.08E-21 5157760000 287936 326810 269924 127170.2 347464 324386 336028 354752 292995 331228 TRUE FALSE FALSE 267753.1733 300912.3854 374445.8016 296058.6524 303881.8251 284366.5534 251950.2403 273982.7138 318392.0425 248286.3529 1.078404714 1.211957008 1.508120754 1.192408076 1.223916746 1.14531689 1.014756701 1.103494858 1.282358208 1 17.92164544 -6.182251307 2.242078808 1.106558492 1.261457662 0.230602937 0.123480265 0.485492609 4.790721207 0.048640239 0.047267348 6.57E-07 6.182251307 0.154899169 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 2 VGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 44 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.998)PAPGT(0.002)TAEEAMSR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.998)PAPGT(0.001)T(0.001)AEEAMSR ; 180.02 1.57E-22 748291000 9288.8 7164.4 11098 9350.3 14454 11940 14844 14326 10947 15484 TRUE FALSE FALSE 11355.06151 8002.214258 15203.61203 9861.083213 13014.90901 12565.15994 11672.45814 10812.52604 13143.96249 11624.12376 0.976853116 0.688414406 1.30793618 0.848329166 1.119646459 1.08095545 1.004158109 0.930179879 1.13074867 1 13.50483435 -4.73935888 24.99999568 1.04461193 0.832633905 0.29893116 0.134371611 281.6638775 318900.6933 0.031524789 0.083260611 1.82E-05 4.73935888 -0.211978025 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_A486_30min_R1 3 VGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 44 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQRENAS(0.996)PAPGT(0.003)T(0.001)AEEAMSR;VGDPPQPLPEEPMEVQGAERAS(0.999)PEPQRENAS(0.981)PAPGT(0.007)T(0.006)AEEAMS(0.006)R;VGDPPQPLPEEPMEVQGAERAS(0.991)PEPQRENAS(0.903)PAPGT(0.043)T(0.045)AEEAMS(0.017)R ;; 196.08 7.90E-24 774286000 19380 35792 31615.9 11500.5 40495.1 23378 24634.1 30391.6 24970.5 22056.4 TRUE FALSE FALSE 18021.56208 32955.71157 43858.42318 26773.7452 35415.82696 20493.86005 18470.38763 23472.09612 27134.96305 16533.33388 1.0900138 1.993288941 2.652727121 1.619379697 2.142086237 1.239547946 1.117160505 1.419683187 1.64122755 1 14.01309005 -6.270107409 24.47493477 1.299356287 1.93099351 0.36613469 0.403909826 546.2591878 1542405.143 0.143505451 0.128555989 5.37E-07 6.270107409 0.631637223 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_HeLa_A485_30min_R1 3 VGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 44 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQRENASPAPGTTAEEAMSR;VGDPPQPLPEEPMEVQGAERAS(0.977)PEPQRENAS(0.009)PAPGT(0.004)T(0.004)AEEAMS(0.006)R;VGDPPQPLPEEPMEVQGAERAS(1)PEPQRENASPAPGTTAEEAMSR ;; 157.25 3.46E-12 985090000 17616 13729.4 16463.8 22164.2 35694.7 30420.6 45050.5 56960.3 21009 48417.6 TRUE FALSE FALSE 21534.61843 15334.9339 22554.44474 23374.97412 32140.81034 32013.37558 35425.09265 42990.69711 25225.31359 36347.98338 0.592457034 0.421892289 0.620514335 0.64308861 0.884252917 0.880746952 0.974609575 1.182753295 0.693994859 1 15.1495877 -5.691545993 1.298204211 0.969894114 0.51139957 0.690403903 0.122360788 0.233156624 0.820914332 0.045639277 0.06986536 2.03E-06 5.691545993 -0.458494544 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_HeLa_A486_30min_R1 1 VGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 44 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQRENASPAPGTTAEEAMSR 140 1.92E-09 290920000 0 0 3676.1 0 7618.4 6659.5 12510 8494.1 0 8929.9 TRUE FALSE FALSE 0 0 5099.584369 0 6662.829233 5837.918599 9379.865683 6560.178855 0 6693.794916 0 0 0.761837558 0 0.995373972 0.87213885 1.401277721 0.980038818 0 1 12.70860864 -5.767735313 24.9959121 0.89999725 0.217667852 0.422703149 0.390616967 152.2492529 604454.1533 0.122825509 0.142686055 1.71E-06 5.767735313 -0.682329399 VGDSQNPLLS(ph)DGDLSTMIGK ddPTM_HeLa_A486_30min_R1 2 VGDSQNPLLSDGDLSTMIGK 20 0 B1APE1;B1APE2;Q00403 B1APE1 GTF2B Transcription initiation factor IIB 1 0 VGDSQNPLLS(1)DGDLSTMIGK;VGDSQNPLLS(1)DGDLSTMIGK ; 101.49 0.00015602 81031000 165112 168975 110607 84087 193788 197526 228705 217623 145564 259495 TRUE FALSE FALSE 153538.5014 155584.8056 153436.9926 195758.7855 169481.302 173157.2504 171480.59 168074.9936 158181.6047 194515.763 0.789337065 0.799857056 0.788815211 1.006390344 0.871298549 0.890196495 0.881576832 0.864068757 0.813207127 1 17.56952755 -13.99999999 0.017550042 2.050956436 1.40E-12 0.31749826 0.062547765 5940.940219 7.88312789 599.0631773 352.4267327 1.00E-14 13.99999999 -2.050956436 VGDSTPVSEKPVSAAVDANASES(ph)P ddPTM_HeLa_A485_30min_R1 2 VGDSTPVSEKPVSAAVDANASESP 24 1 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 VGDSTPVSEKPVSAAVDANAS(0.001)ES(0.999)P;VGDSTPVSEKPVSAAVDANAS(0.001)ES(0.999)P ; 322.07 7.16E-106 1119350000 1619370 1664160 1386420 2127280 2273100 1991310 2563700 2598600 1695270 2892700 TRUE FALSE FALSE 1979593.27 1858769.036 1899314.452 2243487.92 2046782.183 2095571.912 2015944.551 1961289.276 2035495.139 2171603.126 0.911581516 0.855943249 0.874613979 1.033102178 0.942521291 0.96498844 0.928320892 0.903152722 0.937323728 1 21.05032904 -5.142326544 20.91510204 0.952899696 0.878221759 0.473697786 0.03721426 5.101209227 879.383864 0.010280334 0.017806139 7.21E-06 5.142326544 -0.074677937 VGDSTPVSEKPVSAAVDANASES(ph)P ddPTM_HeLa_A486_30min_R1 2 VGDSTPVSEKPVSAAVDANASESP 24 1 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 VGDSTPVSEKPVSAAVDANASES(1)P;VGDSTPVSEKPVSAAVDANASES(1)P ; 264.33 7.09E-62 1298070000 2113940 2273860 1398030 943200 2334870 2466280 2811120 2649990 1948340 2791000 TRUE FALSE FALSE 1965763.722 2093671.052 1939384.657 2195817.267 2042008.833 2162015.449 2107748.043 2046645.126 2117223.68 2092115.434 0.939605765 1.000743563 0.926996965 1.049567931 0.976049792 1.033411166 1.007472154 0.97826587 1.012001368 1 20.99653102 -5.254343602 24.99983101 1.006895993 0.960278247 0.429569488 0.027461812 570.6448269 2010490.389 0.007045328 0.011898541 5.57E-06 5.254343602 -0.046617746 VGDTEKPEPERS(ph)PPNR ddPTM_HeLa_A485_30min_R1 8 VGDTEKPEPERSPPNR 16 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR ;;;;;;; 152 1.87E-08 90138460000 6628020 6085210 4695500 9004330 8190090 7223540 10791780 10681200 5836320 11450010 TRUE FALSE FALSE 8102400.183 6796822.375 6432560.846 9496213.748 7374655.882 7601753.385 8486028.042 8061618.953 7007615.89 8595733.229 0.942607218 0.790720488 0.748343472 1.104759012 0.857943783 0.884363577 0.987237251 0.93786286 0.815243529 1 23.03518928 -5.217100374 24.99999642 0.934568526 0.823573436 0.252498574 0.089201591 652.9529522 368158.4435 0.023743072 0.041123947 6.07E-06 5.217100374 -0.11099509 VGDTEKPEPERS(ph)PPNR ddPTM_HeLa_A486_30min_R1 8 VGDTEKPEPERSPPNR 16 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR ;;;;;;; 173.43 1.01E-12 65463140000 6249250 6406830 3679780 3148190 6535990 7120090 8851070 8407080 4983870 8587600 TRUE FALSE FALSE 5811209.846 5899129.458 5104689.364 7329145.421 5716185.189 6241685.688 6636438.669 6492971.409 5415875.864 6437209.064 0.902753008 0.916411041 0.792997293 1.138559482 0.887991229 0.969626064 1.030949687 1.008662503 0.841339129 1 22.61800389 -5.229728199 24.99999168 0.980358979 0.875289533 0.283657999 0.081218508 915.8366991 722012.7348 0.021315106 0.036914835 5.89E-06 5.229728199 -0.105069446 VGDTEKPEPERS(ph)PPNRK ddPTM_HeLa_A485_30min_R1 4 VGDTEKPEPERSPPNRK 17 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 VGDTEKPEPERS(1)PPNRK;VGDTEKPEPERS(1)PPNRK;VGDTEKPEPERS(1)PPNRK;VGDTEKPEPERS(1)PPNRK ;;; 170.19 2.31E-11 3303900000 1073310 757225 524053 1525410 1095200 1095340 1751200 1669610 837840 2123980 TRUE FALSE FALSE 1312064.107 845775.8768 717922.0124 1608739.286 986158.0425 1152690.309 1377041.814 1260135.53 1005986.803 1594510.875 0.822863066 0.53042967 0.450245918 1.00892337 0.618470565 0.722911538 0.863613937 0.790295977 0.630906204 1 20.60468251 -14 0.117855318 1.899415963 0.574475234 0.226941662 0.157107372 234.0489428 1.795424099 50.61506184 1.615695802 1.00E-14 14 -1.324940728 VGDTEKPEPERS(ph)PPNRK ddPTM_HeLa_A486_30min_R1 4 VGDTEKPEPERSPPNRK 17 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 VGDTEKPEPERS(1)PPNRK;VGDTEKPEPERS(1)PPNRK;VGDTEKPEPERS(1)PPNRK;VGDTEKPEPERS(1)PPNRK ;;; 183.07 1.23E-17 3560020000 2191950 2088330 880373 1330120 1927160 2728900 3444110 3186620 1651070 3757260 TRUE FALSE FALSE 2038305.624 1922843.125 1221277.003 3096586.581 1685437.623 2392236.063 2582357.25 2461096.189 1794186.077 2816417.64 0.723722787 0.682726559 0.433627806 1.099477058 0.59843313 0.849389675 0.916894289 0.873839218 0.637045462 1 21.42542985 -5.249510261 24.99774521 0.840158042 0.620295828 0.324774093 0.157806622 960.8829901 2013549.231 0.041346757 0.070902252 5.63E-06 5.249510261 -0.219862214 VGDTSLDPNDFDFTVT(ph)GRGSPSRR ddPTM_HeLa_A485_30min_R1 2 VGDTSLDPNDFDFTVTGRGSPSRR 24 2 I6LM39;A0A087X1U4;P51608;P51608-2 I6LM39 MECP2 Methyl-CpG-binding protein 2 1 0 VGDTSLDPNDFDFT(0.119)VT(0.294)GRGS(0.294)PS(0.294)RR;VGDTSLDPNDFDFT(0.051)VT(0.316)GRGS(0.316)PS(0.316)RR ; 103.16 0.00059058 315720000 27178 64415 51260 32074 86718 81549 95706 198280 55746 51313 TRUE FALSE FALSE 33223.65234 71947.77391 70223.20711 33826.1214 78084.05143 85818.77954 75257.63125 149651.5191 66933.71087 38521.61345 0.862467829 1.86772483 1.822956019 0.878107597 2.027019235 2.227808543 1.953646915 3.884871523 1.737562498 1 15.23338051 -5.956126643 7.066239899 2.307256549 1.426393456 0.193607705 0.750017883 0.304862373 38.44797413 0.229052761 0.258950298 1.11E-06 5.956126643 -0.880863092 VGDTSLDPNDFDFTVTGRGS(ph)PSRR ddPTM_HeLa_A485_30min_R1 1 VGDTSLDPNDFDFTVTGRGSPSRR 24 2 I6LM39;A0A087X1U4;P51608;P51608-2 I6LM39 MECP2 Methyl-CpG-binding protein 2 1 0 VGDTSLDPNDFDFT(0.233)VT(0.233)GRGS(0.267)PS(0.267)RR 60.176 0.015942 102930000 30672 42222 42226 29343 59808 54391 57418 113300 44601 63818 TRUE FALSE FALSE 37494.88058 47159.49562 57847.15457 30945.93379 53853.30552 57238.82866 45150.17524 85512.99735 53552.0116 47909.34708 0.782621406 0.984348535 1.207429408 0.645926853 1.12406678 1.194731971 0.942408486 1.784891729 1.117777946 1 15.54801953 -6.49632647 1.341871909 1.29795062 0.938937145 0.20388059 0.258746678 0.610550257 2.235200428 0.134773786 0.099574319 3.19E-07 6.49632647 -0.359013475 VGDVT(ph)PQVK ddPTM_HeLa_A485_30min_R1 5 VGDVTPQVK 9 0 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK ;;;; 142.1 0.00057502 2988500000 3839850 3045480 2424570 4651270 4534470 3719310 5597800 5175230 2871190 6116610 TRUE FALSE FALSE 4694011.385 3401622.394 3321519.338 4905357.102 4083002.245 3914047.32 4401784.3 3905996.728 3447411.497 4591851.695 1.022248038 0.740795352 0.723350744 1.068274289 0.889184259 0.85238975 0.95860768 0.850636516 0.750767169 1 22.13064462 -9.992258592 3.964123974 1.000012409 0.872117647 0.105078206 0.111239409 74719008.23 187502534.8 14438.5246 0.02782969 1.02E-10 9.992258592 -0.127894762 VGDVT(ph)PQVK ddPTM_HeLa_A486_30min_R1 6 VGDVTPQVK 9 0 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK;VGDVT(1)PQVK ;;;;; 177.04 5.35E-06 3129820000 5913020 5807860 2951210 2531410 5764850 6641760 7938300 7534740 4296180 7183800 TRUE FALSE FALSE 5498547.833 5347624.022 4093997.548 5893250.41 5041768.758 5822367.18 5952053.377 5819244.184 4668576.342 5384929.721 1.021099275 0.993072203 0.760269448 1.094396903 0.936273827 1.081233643 1.105316817 1.080653692 0.86697071 1 22.36049609 VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK ddPTM_HeLa_A485_30min_R1 7 VGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 32 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK ;;;;;; 303.84 3.03E-93 8458870000 1267716 852646 613648 2344494 1258649 1173727 1976650 1660307 930847 2991800 TRUE FALSE FALSE 1549715.051 952355.5327 840661.9312 2472567.771 1133333.486 1235181.531 1554322.58 1253114.105 1117659.455 2245999.32 0.689989101 0.424023073 0.374293048 1.100876456 0.504600993 0.54994742 0.692040539 0.557931649 0.497622348 1 21.09892606 -10.98915334 3.294201029 1.3690123 0.599343737 0.279384987 0.19318589 283555219.7 7314793.365 793610484.8 0.046627128 1.03E-11 10.98915334 -0.769668563 VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK ddPTM_HeLa_A486_30min_R1 7 VGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 32 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK ;;;;;; 240.91 1.13E-50 8654832000 460137 421706 188744.4 386691 386492 556083 760734 674243 329913 911465 TRUE FALSE FALSE 427883.7724 388288.4807 261831.2864 900236.1903 338014.5695 487479.1333 570390.307 520732.5875 358510.1245 683228.2314 0.626267699 0.568314456 0.383226679 1.317621475 0.494731561 0.713493838 0.834845928 0.762164916 0.52472967 1 19.38200806 VGEEEHVY(ph)SFPNK ddPTM_HeLa_A485_30min_R1 6 VGEEEHVYSFPNK 13 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 VGEEEHVY(0.985)S(0.015)FPNK;VGEEEHVY(1)SFPNK;VGEEEHVY(0.992)S(0.008)FPNK;VGEEEHVY(1)SFPNK;VGEEEHVY(0.902)S(0.098)FPNK;VGEEEHVY(0.883)S(0.117)FPNK ;;;;; 232.6 3.80E-27 4340100000 5026140 3939330 2976370 6477480 5929400 4733750 7472550 6621650 4443880 9185990 TRUE FALSE FALSE 6144187.503 4400000.376 4077453.12 6831328.331 5339048.117 4981601.83 5875978.647 4997679.955 5335725.954 6896091.749 0.890966612 0.63804261 0.591270138 0.990608678 0.774213614 0.722380446 0.852073734 0.724711929 0.773731869 1 22.71734754 -11.04999418 2.129968907 1.294497411 0.769626465 0.271909627 0.111250534 7986361.807 2412178.516 11451447.66 0.028011644 8.91E-12 11.04999418 -0.524870947 VGEEEHVY(ph)SFPNK ddPTM_HeLa_A486_30min_R1 5 VGEEEHVYSFPNK 13 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;F5H836;P49023-3 A0A1B0GTU4;P49023-3 PXN Paxillin 1 0 VGEEEHVY(0.999)S(0.001)FPNK;VGEEEHVY(0.985)S(0.015)FPNK;VGEEEHVY(0.986)S(0.014)FPNK;VGEEEHVY(0.986)S(0.014)FPNK;VGEEEHVY(0.946)S(0.054)FPNK ;;;; 230.14 1.08E-26 4067897000 4888180 4872680 2539880 1846505 4577780 5482460 6853700 6435460 3728940 5936090 TRUE FALSE FALSE 4545543.825 4486551.091 3523389.556 4298756.957 4003592.146 4806089.827 5138831.769 4970246.243 4052167.522 4449654.427 1.021549853 1.008292029 0.791834425 0.966087823 0.899753501 1.080104063 1.154883341 1.116996011 0.910670163 1 22.08526187 -6.267195459 24.71004521 1.066240011 0.934931508 0.300357025 0.086478455 483.8041438 2076896.633 0.030829628 0.027944025 5.41E-07 6.267195459 -0.131308503 VGEFCHNR ddPTM_HeLa_A485_30min_R1 3 VGEFCHNR 8 0 P22314;Q5JRR9;P22314-2;Q5JRS2;Q5JRS0 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ;; ;; 161.68 0.00013874 562730000 424490 428520 421730 490330 591310 549700 696590 720820 432730 666600 FALSE FALSE TRUE 518916.336 478631.6864 577745.4766 517115.4863 532437.1002 578481.442 547757.8559 544037.7648 519574.9418 500428.8879 1.036943207 0.956442959 1.154500651 1.033344595 1.06396156 1.15597132 1.09457681 1.087143005 1.03825929 1 18.93280555 -4.748132283 24.99999516 1.082795328 0.996693088 0.292385268 0.050530053 264.079238 496116.0333 0.012366052 0.032312524 1.79E-05 4.748132283 -0.08610224 VGEFCHNR ddPTM_HeLa_A486_30min_R1 4 VGEFCHNR 8 0 P22314;Q5JRR9;P22314-2;Q5JRS2;Q5JRS0 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ;;; ;;; 194.2 1.02E-11 276990000 618740 738590 587660 277316 953560 755730 862530 837320 659420 878370 FALSE FALSE TRUE 575369.5212 680061.4385 815217.6901 645605.6628 833955.6132 662495.7163 646715.8711 646680.5146 716579.0565 658420.4348 0.873863402 1.032868062 1.238141538 0.980537099 1.266600441 1.006189482 0.982223268 0.982169569 1.088330524 1 19.32864959 VGEFSGANK ddPTM_HeLa_A485_30min_R1 2 VGEFSGANK 9 0 P10599;P10599-2 P10599 TXN Thioredoxin 0 0 ; ; 194.29 2.78E-11 138513000 207300 166411 159534 282990 266630 208650 296910 244430 197642 396160 FALSE FALSE TRUE 253413.1698 185871.3189 218552.2654 298449.0271 240083.381 219574.5914 233472.753 184483.1592 237306.9365 297404.6028 0.852082205 0.62497795 0.734865107 1.003511796 0.80726182 0.7383026 0.785034094 0.62031037 0.79792624 1 18.18206745 -11.38636458 2.104767697 2.490925035 0.770796469 0.296064206 0.10454103 4978261.696 464456.7248 35374855.15 0.029588294 4.11E-12 11.38636458 -1.720128565 VGEFSGANK ddPTM_HeLa_A486_30min_R1 2 VGEFSGANK 9 0 P10599;P10599-2 P10599 TXN Thioredoxin 0 0 ; ; 133.23 0.0016542 43939000 55555 83693 59955 34318 99780 93157 115465 105562 74247 93818 FALSE FALSE TRUE 51660.88139 77060.86188 83171.18165 79894.03834 87264.66199 81664.23649 86574.43574 81527.837 80682.78974 70325.36215 0.734598156 1.095776254 1.182662685 1.136062949 1.240870425 1.161234496 1.231055669 1.159294947 1.147278695 1 16.10175746 -4.25578777 2.868127547 1.167727842 0.654435896 0.800514386 0.062752536 0.159350779 1.833269084 0.014909745 0.191812837 5.55E-05 4.25578777 -0.513291946 VGEVIVTK ddPTM_HeLa_A485_30min_R1 1 VGEVIVTK 8 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 107.47 0.014056 36523000 25804 31402 25015 37912 40326 28567 35407 30067 27628 60931 FALSE FALSE TRUE 31544.01078 35074.19074 34269.08946 39983.03656 36311.00185 30062.72395 27842.0052 22693.02111 33172.68618 45742.02305 0.689606814 0.766782674 0.749181763 0.874098562 0.793821511 0.657223313 0.608674548 0.496108821 0.725212484 1 15.48123255 -6.265249929 23.77697939 0.660402546 0.778363166 0.045554014 0.129411229 312.0712178 1947245.213 0.043116425 0.039522017 5.43E-07 6.265249929 0.11796062 VGFGS(ph)GQPPPYDHLFEVALPK ddPTM_HeLa_A485_30min_R1 1 VGFGSGQPPPYDHLFEVALPK 21 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1;A0A2R8YEH9 Q92574 TSC1 Hamartin 1 0 VGFGS(1)GQPPPYDHLFEVALPK 100.29 0.00030115 77940000 14873 10475 10704 17140 20306 13682 20871 24057 11865 23989 TRUE FALSE FALSE 18181.44754 11699.96013 14663.85503 18076.3148 18284.26334 14398.36836 16411.74035 18156.98303 14246.19667 18008.98378 1.00957654 0.649673533 0.81425222 1.003738746 1.01528568 0.799510319 0.911308519 1.008218079 0.791060553 1 14.13642915 -5.17619892 8.514870623 0.929985787 0.806203049 0.157247443 0.112388457 0.568137092 52.31590443 0.029575822 0.051394004 6.67E-06 5.17619892 -0.123782738 VGFGS(ph)GQPPPYDHLFEVALPK ddPTM_HeLa_A486_30min_R1 1 VGFGSGQPPPYDHLFEVALPK 21 0 Q92574;A0A2R8Y5S3;A0A2R8Y5N2;A0A2R8YFV7;Q92574-2;A0A2R8Y6S1;A0A2R8YEH9 Q92574 TSC1 Hamartin 1 0 VGFGS(1)GQPPPYDHLFEVALPK 189.2 1.54E-19 72619000 79002 87478 57526 43081 97976 91780 110620 110670 60912 98204 TRUE FALSE FALSE 73464.36777 80545.92469 79801.6078 100294.7452 85686.93649 80457.11675 82941.70598 85472.85691 66191.9012 73613.0792 0.997979823 1.094179534 1.08406833 1.362458225 1.164017827 1.092973119 1.126725127 1.161109654 0.899186692 1 16.1676745 -7.756182789 24.99781652 0.949593316 1.13916525 0.398278713 0.091280791 121.2230763 576499.5062 0.06924351 0.024418422 1.75E-08 7.756182789 0.189571934 VGFQYEGTYK ddPTM_HeLa_A485_30min_R1 1 VGFQYEGTYK 10 0 P11413-2;P11413;P11413-3 P11413-2;P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 114.4 0.0081587 38615000 15997 19167 22188 20044 27292 22714 29113 30413 21186 32392 FALSE FALSE TRUE 19555.47746 21408.41392 30396.26452 21138.95297 24574.71265 23903.26992 22892.76972 22954.16406 25437.83587 24317.27053 0.804180611 0.880378984 1.249986691 0.869297931 1.010586802 0.982975038 0.941420201 0.943944923 1.046081049 1 14.56969368 -4.535766169 24.99934751 1.000382285 0.823230031 0.335668374 0.094342842 208.6473592 404739.203 0.023205488 0.061473532 2.91E-05 4.535766169 -0.177152254 VGGS(ph)DEEASGIPSR ddPTM_HeLa_A485_30min_R1 4 VGGSDEEASGIPSR 14 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;H7C446 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 0 VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR ;;; 271.45 8.58E-49 11129420000 1415755 1634674 1401651 1548338 2091400 1535363 2086048 1984388 1603419 2373751 TRUE FALSE FALSE 1730684.815 1825834.905 1920180.032 1632919.784 1883172.873 1615752.233 1640346.803 1497713.732 1925210.486 1782018.561 0.971193484 1.02458804 1.077530882 0.916331524 1.056763893 0.906697757 0.92049928 0.840459109 1.080353778 1 20.76508093 -6.269884246 24.96484352 0.93781176 1.008759663 0.135940533 0.072228493 1057.458784 3126067.089 0.024347763 0.021838588 5.37E-07 6.269884246 0.070947902 VGGS(ph)DEEASGIPSR ddPTM_HeLa_A486_30min_R1 5 VGGSDEEASGIPSR 14 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;H7C446 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 0 VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR ;;;; 275.15 6.82E-49 12722000000 2408320 2758930 1985620 934289 3002630 2643190 3135940 3232670 2392990 3214740 TRUE FALSE FALSE 2239509.205 2540302.339 2754505.241 2175072.008 2626012.147 2317100.092 2351294.643 2496661.61 2600416.3 2409748.18 0.929354039 1.054177511 1.143067672 0.902613819 1.089745464 0.961552793 0.975742886 1.036067433 1.07912367 1 21.20045096 -7.505846003 23.84717333 1.045573075 1.011847502 0.033634964 0.071310218 1509.553531 2113516.293 0.039582863 0.018270918 3.12E-08 7.505846003 -0.033725573 VGGS(ph)SVDLHR ddPTM_HeLa_A485_30min_R1 8 VGGSSVDLHR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 VGGS(0.915)S(0.085)VDLHR;VGGS(0.793)S(0.207)VDLHR;VGGS(0.892)S(0.108)VDLHR;VGGS(0.95)S(0.05)VDLHR;VGGS(0.787)S(0.213)VDLHR;VGGS(0.85)S(0.15)VDLHR;VGGS(0.921)S(0.079)VDLHR;VGGS(0.799)S(0.201)VDLHR ;;;;;;; 158.42 8.13E-07 18832470000 3136020 3113370 2519280 2360960 3387880 2942580 3626330 3692550 2164590 3588730 TRUE FALSE FALSE 3833616.83 3477451.539 3451266.508 2489933.267 3050570.772 3096648.939 2851534.971 2786946.323 2599003.358 2694125.657 1.422953982 1.290753284 1.281033978 0.92420829 1.132304562 1.149407761 1.058426864 1.034452983 0.964692702 1 21.36138571 -5.108797114 4.970027255 1.049128135 1.341803166 0.778184976 0.072277179 0.107666658 4.015559117 0.02054543 0.036926337 7.78E-06 5.108797114 0.292675032 VGGS(ph)SVDLHR ddPTM_HeLa_A486_30min_R1 5 VGGSSVDLHR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 VGGS(0.976)S(0.024)VDLHR;VGGS(0.965)S(0.035)VDLHR;VGGS(0.963)S(0.037)VDLHR;VGGS(0.974)S(0.026)VDLHR;VGGS(0.951)S(0.049)VDLHR ;;;; 160.52 4.41E-07 14480670000 2720860 3329940 2714000 722422 3878000 2815880 3449330 3274820 2835420 2914350 TRUE FALSE FALSE 2530141.765 3066063.427 3764933.483 1681834.925 3391585.079 2468485.355 2586271.151 2529214.975 3081196.489 2184577.791 1.158183414 1.40350389 1.723414703 0.769867263 1.552512844 1.129959924 1.183876885 1.157759172 1.410431115 1 21.05892305 -5.240408615 24.99786311 1.193222034 1.425880904 0.194333559 0.236404298 1454.240073 1728555.57 0.061351792 0.10612629 5.75E-06 5.240408615 0.23265887 VGGSS(ph)VDLHR ddPTM_HeLa_A485_30min_R1 2 VGGSSVDLHR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 VGGS(0.013)S(0.987)VDLHR;VGGS(0.002)S(0.998)VDLHR ; 159.99 4.54E-07 995400000 265700 268780 197695 274260 328650 288170 357830 349310 242270 468710 TRUE FALSE FALSE 324804.0483 300211.4829 270830.6073 289242.1293 295928.452 303258.1356 281376.6973 263641.1748 290891.3668 351869.223 0.923081722 0.853190513 0.769691094 0.822015995 0.84101829 0.861848993 0.799662713 0.749258979 0.82670307 1 18.42467981 -4.345921839 3.669785262 0.823872952 0.926407767 0.129080148 0.064820004 0.392017635 8.759204546 0.015462277 0.091551548 4.51E-05 4.345921839 0.102534814 VGGSS(ph)VDLHR ddPTM_HeLa_A486_30min_R1 1 VGGSSVDLHR 10 0 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 VGGS(0.04)S(0.96)VDLHR 142.1 4.68E-06 686630000 152530 171100 107590 59476 178880 171030 204420 188190 158990 220680 TRUE FALSE FALSE 141838.4347 157541.4129 149251.7294 138463.1338 156443.2024 149930.0575 153271.9539 145343.2452 172771.3812 165420.2916 0.85744278 0.952370542 0.902257685 0.837038385 0.945731632 0.906358319 0.926560777 0.878630087 1.044438863 1 17.33577669 -7.762061099 24.99975244 1.022219473 0.902982927 0.647206131 0.035829442 9.758420322 392242.1491 0.027585271 0.00874768 1.73E-08 7.762061099 -0.119236546 VGGTSDVEVNEK ddPTM_HeLa_A485_30min_R1 2 VGGTSDVEVNEK 12 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 185.77 4.38E-09 46452000 43759 40898 32994 63486 57991 39444 56638 44817 37640 99438 FALSE FALSE TRUE 53493.03858 45680.66533 45199.85359 66954.07942 52217.21242 41509.22685 44536.82861 33825.56048 45194.00275 74649.93662 0.716585184 0.611931736 0.60549085 0.896907385 0.699494397 0.556051736 0.596609061 0.453122427 0.605412473 1 16.18785342 -9.890287342 4.369447002 1.0000048 0.636600687 0.490718521 0.11064065 80050499.82 190608150.3 6647.61616 0.030151931 1.29E-10 9.890287342 -0.363404113 VGHMS(ph)SVELDDELLDPDMDPPHPFPK ddPTM_HeLa_A485_30min_R1 5 VGHMSSVELDDELLDPDMDPPHPFPK 26 0 H3BNG8;P51798 H3BNG8 CLCN7 H(+)/Cl(-) exchange transporter 7 1 0 VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK;VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK;VGHMS(0.563)S(0.437)VELDDELLDPDMDPPHPFPK;VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK;VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK ;;;; 179.54 3.22E-20 437438000 435736 631641 554663 241099.8 650599 604021 680173 803640 713120 536727 TRUE FALSE FALSE 532663.9699 705505.9204 759855.9252 254270.4716 585823.0792 635646.6056 534848.482 606546.0299 856236.6429 402930.8366 1.321973702 1.750935536 1.885822221 0.6310524 1.453904804 1.577557605 1.327395259 1.505335345 2.125021381 1 18.62017269 -7.533314475 24.99429081 1.6467331 1.427783087 0.011485773 0.405020816 808.767031 1937006.902 0.26802593 0.101530855 2.93E-08 7.533314475 -0.218950012 VGHMS(ph)SVELDDELLDPDMDPPHPFPK ddPTM_HeLa_A486_30min_R1 4 VGHMSSVELDDELLDPDMDPPHPFPK 26 0 H3BNG8;P51798 H3BNG8 CLCN7 H(+)/Cl(-) exchange transporter 7 1 0 VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK;VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK;VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK;VGHMS(0.558)S(0.442)VELDDELLDPDMDPPHPFPK ;;; 183.64 2.46E-20 341865000 288723 391244 483827 62345.7 589957 326407 268418 294545 567129 189551.6 TRUE FALSE FALSE 268485.0087 360240.4006 671177.7717 145143.9404 515959.0919 286138.223 201256.9774 227483.5334 616288.1984 142086.6456 1.889586509 2.535357205 4.723721705 1.021517116 3.631298985 2.01382911 1.416438375 1.601019803 4.337411133 1 17.11641144 VGIDT(ph)PDIDIHGPEGK ddPTM_HeLa_A485_30min_R1 2 VGIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VGIDT(1)PDIDIHGPEGK;VGIDT(1)PDIDIHGPEGK ; 202.07 4.41E-25 2567100000 2048110 1551570 968950 1958940 2286200 1798250 2499200 2504800 1351980 2962500 TRUE FALSE FALSE 2503705.004 1733012.615 1327404.926 2065951.932 2058577.901 1892403.589 1965225.503 1890493.873 1623309.985 2224003.271 1.125764983 0.779231145 0.596853855 0.928933855 0.925618198 0.850899643 0.883643261 0.850040959 0.729904495 1 21.08472748 -4.254732692 24.31839237 0.833480186 1.125765181 0.38567414 0.108667662 572.9539282 2077445.246 0.027617049 0.257150371 5.56E-05 4.254732692 0.292284995 VGIDT(ph)PDIDIHGPEGK ddPTM_HeLa_A486_30min_R1 2 VGIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VGIDT(1)PDIDIHGPEGK;VGIDT(1)PDIDIHGPEGK ; 208.37 2.33E-25 1510820000 1013670 1062320 662320 507130 1194420 1271670 1561560 1552420 1005460 1805250 TRUE FALSE FALSE 942616.9676 978137.8943 918788.0415 1180624.269 1044604.706 1114784.285 1170841.172 1198967.855 1092614.082 1353203.65 0.696581751 0.722831256 0.678972483 0.872466069 0.771949371 0.823811172 0.865236487 0.886021742 0.807427679 1 20.36794754 -1.711871965 0.088829929 1.129341956 1.03E-10 0.747497233 0.04715011 67.64472768 0.50146373 0.975209688 9.346267341 0.019414582 1.711871965 -1.129341956 VGINYQPPTVVPGGDLAK ddPTM_HeLa_A485_30min_R1 2 VGINYQPPTVVPGGDLAK 18 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBA3E;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 283.45 1.85E-58 137643000 283490 269060 250080 365230 394250 347660 466840 456150 318390 539920 FALSE FALSE TRUE 346551.3725 300524.2265 342594.9987 385181.5901 354997.0857 365862.94 367095.8203 344278.4973 382287.9526 405327.8805 0.854990217 0.741434875 0.845229295 0.950296312 0.875826961 0.902634528 0.905676214 0.849382719 0.943157308 1 18.62872989 -1 0.088365513 1.066985244 0.345932162 0.507919925 0.047587644 143.2709363 0.914432824 0.99889614 12.53184296 0.1 1 -0.721053082 VGINYQPPTVVPGGDLAK ddPTM_HeLa_A486_30min_R1 4 VGINYQPPTVVPGGDLAK 18 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;P0DPH7;P0DPH8;P0DPH7-2;A0A1W2PQM2;Q9NY65;C9J2C0;Q9NY65-2;Q6PEY2;V9GZ17;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA8;TUBA3E;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;;; ;;; 194.48 8.64E-22 182772000 559955 607207 396645 231391 710857 606910 689384 690091 527461 587687 FALSE FALSE TRUE 520705.0461 559089.7059 550236.5665 538689.9419 621694.6866 532035.6148 516892.8316 532972.3439 573181.7442 440526.35 1.182006584 1.269140214 1.249043483 1.222832509 1.411254257 1.207727108 1.173352812 1.209853494 1.301129306 1 18.74886879 -10.46997498 3.186025757 0.994946548 1.247712447 0.558370599 0.065998455 27374888.07 35992837.19 1240679.694 0.016530577 3.39E-11 10.46997498 0.252765899 VGIS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 VGISPLR 7 0 Q5VZB9 Q5VZB9 DMRTA1 Doublesex- and mab-3-related transcription factor A1 1 0 VGIS(1)PLR 72.021 0.019443 742660000 134350 180700 183650 140090 220530 178230 190360 231590 158590 183710 TRUE FALSE FALSE 164235.694 201831.2931 251589.7773 147742.762 198573.2589 187561.8472 149688.0309 174792.1894 190417.5583 137914.4779 1.190851725 1.463452541 1.824244859 1.071263613 1.439828957 1.359986638 1.085368506 1.267395505 1.380693029 1 17.07341439 -6.185719516 0.950978658 1.203431492 1.445006093 0.172193801 0.2098326 1.043260633 2.024578714 0.121695213 0.120365765 6.52E-07 6.185719516 0.241574601 VGIS(ph)PLR ddPTM_HeLa_A486_30min_R1 1 VGISPLR 7 0 Q5VZB9 Q5VZB9 DMRTA1 Doublesex- and mab-3-related transcription factor A1 1 0 VGIS(1)PLR 59.641 0.037879 799290000 284530 305550 239920 103770 309860 268460 293520 316770 244480 319510 TRUE FALSE FALSE 264585.9163 281337.1052 332823.4493 241581.8042 270994.4695 235340.1347 220078.1915 244648.386 265671.7232 239502.6163 1.104730797 1.174672367 1.389644315 1.008681274 1.131488556 0.982620308 0.918896816 1.021485234 1.109264388 1 17.86968189 -5.300079827 24.96562573 1.02382499 1.218181546 0.518872297 0.087501508 425.9523151 275207.2271 0.025482642 0.037797572 5.01E-06 5.300079827 0.194356556 VGKPS(ph)PK ddPTM_HeLa_A485_30min_R1 1 VGKPSPK 7 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 VGKPS(1)PK 75.294 0.0080956 321220000 152750 110990 53421 308520 127580 155380 233690 234970 131570 465830 TRUE FALSE FALSE 186728.7105 123969.315 73183.65093 325373.6664 114877.6872 163515.4565 183760.2224 177343.2391 157974.8922 349707.154 0.533957365 0.35449465 0.209271243 0.93041753 0.328496818 0.467578243 0.525468868 0.507119277 0.451734803 1 18.41578778 -14 0.384026974 8.556303022 0.466266482 0.430928528 0.179482764 600.0134425 4.44679643 3780.483414 0.118446806 1.00E-14 14 -8.090036539 VGLPARPKS(ph)PLDPK ddPTM_HeLa_A485_30min_R1 2 VGLPARPKSPLDPK 14 2 Q8IYH5-4;Q8IYH5;Q8IYH5-3 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 VGLPARPKS(1)PLDPK;VGLPARPKS(1)PLDPK ; 92.264 0.00055561 1143490000 739130 479120 379200 1313300 949790 828530 1412600 1212400 663680 1936000 TRUE FALSE FALSE 903546.9185 535148.9162 519481.8598 1385042.254 855225.5727 871910.5496 1110786.47 915056.999 796874.4884 1453390.829 0.621682001 0.368207164 0.357427506 0.952973024 0.588434683 0.599914718 0.764272381 0.629601467 0.548286443 1 20.47099128 -14 0.110542323 2.180456642 0.393136948 0.355076338 0.162558057 197.7805136 1.449239063 53.72307069 2.103967166 1.00E-14 14 -1.787319694 VGLPARPKS(ph)PLDPK ddPTM_HeLa_A486_30min_R1 2 VGLPARPKSPLDPK 14 2 Q8IYH5-4;Q8IYH5;Q8IYH5-3 Q8IYH5-4 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 VGLPARPKS(1)PLDPK;VGLPARPKS(1)PLDPK ; 113.33 9.66E-05 1351110000 2770900 2505600 1085130 1914400 2600900 3554800 4878100 4560000 2078710 5028600 TRUE FALSE FALSE 2576674.219 2307047.131 1505321.397 4456819.948 2274670.87 3116244.919 3657547.785 3521787.544 2258894.256 3769405.829 0.683575698 0.612045302 0.399352435 1.182366705 0.603456081 0.826720459 0.970324754 0.934308404 0.599270643 1 21.8459057 -5.241696419 24.99982901 0.861839648 0.569696577 0.383953746 0.178763426 895.3708318 1133775.694 0.047006513 0.081282083 5.73E-06 5.241696419 -0.292143071 VGLQVVAVK ddPTM_HeLa_A485_30min_R1 2 VGLQVVAVK 9 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 166.96 6.65E-06 262810000 395390 412240 345270 486550 527920 454020 514380 534780 384550 764230 FALSE FALSE TRUE 483343.1414 460447.882 472999.7409 513128.9945 475358.4312 477791.7852 404478.5109 403624.3665 461725.6577 573721.5256 0.842469944 0.802563372 0.824441336 0.894386861 0.828552547 0.832793897 0.705008428 0.703519649 0.804790542 1 19.12999112 -6.564166941 24.90278681 0.777234057 0.837999123 0.001667411 0.081094198 318.1384552 191881.189 0.02959896 0.022927277 2.73E-07 6.564166941 0.060765066 VGLQVVAVK ddPTM_HeLa_A486_30min_R1 2 VGLQVVAVK 9 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 166.96 6.65E-06 244730000 462860 599010 452940 198806 678230 602160 673510 617460 561250 589060 FALSE FALSE TRUE 430415.9042 551542.266 628330.4982 462830.4151 593160.0692 527871.6215 504990.6743 476877.8371 609899.6019 441555.5419 0.974771831 1.249089217 1.42299312 1.048181647 1.343341919 1.195481817 1.143662861 1.079995135 1.381252287 1 18.7522354 -6.534663552 16.11321409 1.159559078 1.218709917 0.027075638 0.15098458 14.77955066 20188.02863 0.055902863 0.043513994 2.92E-07 6.534663552 0.059150839 VGLQVVAVK(ac)APGFGDNRK ddPTM_HeLa_A486_30min_R1 2 VGLQVVAVKAPGFGDNRK 18 2 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; VGLQVVAVK(1)APGFGDNRK;VGLQVVAVK(1)APGFGDNRK 160.55 2.22E-13 51642000 35790 39545 32094 17042.4 47914 37964 49478 46063 35524 50408 FALSE TRUE FALSE 33281.30582 36411.31018 44521.65631 39675.56848 41904.17934 33280.38767 37098.08108 35575.46045 38603.24892 37785.5087 0.880795495 0.963631599 1.178273307 1.050020758 1.109001328 0.880771196 0.981807109 0.941510692 1.021641636 1 15.20554543 -6.255302455 24.99969024 0.962531856 1.040949615 0.156410971 0.082215936 964.6273739 3929556.346 0.028858048 0.028163602 5.56E-07 6.255302455 0.078417758 VGLSPDS(ph)PAGDRNSVGSEGSVGSIR ddPTM_HeLa_A486_30min_R1 1 VGLSPDSPAGDRNSVGSEGSVGSIR 25 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 VGLSPDS(0.53)PAGDRNS(0.461)VGS(0.008)EGSVGSIR 79.898 0.003162 344260000 185230 209060 137930 65678 241690 169540 213600 233100 149240 234060 TRUE FALSE FALSE 172246.3335 192493.3242 191340.1899 152901.7032 211374.9865 148623.8786 160155.0208 180028.2185 162176.2434 175449.8525 0.981741113 1.097141556 1.090569112 0.871483794 1.204760127 0.847101758 0.912825052 1.026095012 0.924345282 1 17.42069921 -6.287919327 24.99701956 0.941876354 1.044237924 0.25119871 0.092231936 1142.11176 1078147.638 0.031504025 0.027791315 5.15E-07 6.287919327 0.10236157 VGLSPDSPAGDRNS(ph)VGSEGSVGSIR ddPTM_HeLa_A485_30min_R1 1 VGLSPDSPAGDRNSVGSEGSVGSIR 25 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 VGLSPDS(0.005)PAGDRNS(0.993)VGS(0.002)EGSVGSIR 142.79 2.72E-09 1055200000 272580 343350 329500 288220 438050 329050 359980 439590 304630 433760 TRUE FALSE FALSE 333214.4806 383501.7958 451395.7616 303964.7288 394436.2039 346278.5492 283067.3322 331779.8632 365766.4468 325631.6148 1.023286639 1.177716715 1.386216022 0.933461971 1.21129579 1.063405804 0.869287008 1.018880994 1.123252259 1 18.31288125 -6.51800253 24.68953319 0.998988181 1.148401397 0.227998402 0.124853615 273.6094164 1385371.209 0.046965635 0.03741892 3.03E-07 6.51800253 0.149413215 VGLSPDSPAGDRNS(ph)VGSEGSVGSIR ddPTM_HeLa_A486_30min_R1 4 VGLSPDSPAGDRNSVGSEGSVGSIR 25 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 VGLSPDSPAGDRNS(1)VGSEGSVGSIR;VGLSPDSPAGDRNS(0.999)VGS(0.001)EGSVGSIR;VGLSPDS(0.005)PAGDRNS(0.98)VGS(0.015)EGS(0.001)VGSIR;VGLSPDS(0.003)PAGDRNS(0.905)VGS(0.081)EGS(0.01)VGSIR ;;; 270.74 1.36E-63 2206150000 1272410 1562970 1205190 433506 1745900 1309950 1450470 1547050 1218240 1413090 TRUE FALSE FALSE 1183220.63 1439114.565 1671871.844 1009223.876 1526912.942 1148341.688 1087547.064 1194820.487 1323838.024 1059243.066 1.117043545 1.358625429 1.578364681 0.952778364 1.441513276 1.084115369 1.026720966 1.127994626 1.249796261 1 20.01460225 -6.292626648 24.40072635 1.101287284 1.290819151 0.238812814 0.171271924 783.5500167 613041.7806 0.059542618 0.052517561 5.10E-07 6.292626648 0.189531867 VGLTNYAAAYCTGLLLAR ddPTM_HeLa_A485_30min_R1 1 VGLTNYAAAYCTGLLLAR 18 0 P46777;A0A2R8Y6J3;Q5T7N0;A0A2R8Y4A2 P46777 RPL5 60S ribosomal protein L5 0 0 128.9 3.64E-06 13079000 7084.4 6550.7 8737.1 7586.9 11911 6165 10363 9432 7556.5 11836 FALSE FALSE TRUE 8660.300339 7316.747381 11969.31687 8001.353136 10725.09902 6487.789867 8148.860392 7118.787211 9073.020238 8885.503025 0.974655044 0.82344774 1.347061257 0.900495235 1.20703341 0.730154483 0.917096125 0.801168734 1.021103725 1 13.11723774 -6.263187827 24.99363526 0.882927136 1.046060123 0.191281527 0.16010886 261.1322793 3732796.169 0.053045565 0.049215532 5.46E-07 6.263187827 0.163132987 VGMADANS(ph)PPKPLSKPR ddPTM_HeLa_A485_30min_R1 2 VGMADANSPPKPLSKPR 17 2 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 VGMADANS(0.997)PPKPLS(0.003)KPR;VGMADANS(1)PPKPLSKPR ; 108.71 7.90E-05 857090000 486810 312640 219890 914750 499010 376110 666660 598090 379020 1241790 TRUE FALSE FALSE 595099.205 349200.5284 301236.4614 964720.4762 449326.8123 395802.538 524222.6449 451407.4897 455085.8374 932234.6065 0.638357771 0.374584387 0.323133747 1.034847312 0.481988986 0.424573959 0.562329097 0.48422091 0.488166642 1 19.83033354 -10.5054622 2.998873515 1.015345559 0.533008435 0.356495339 0.187536139 70232766.58 81689463.11 8874481.171 0.047748865 3.12E-11 10.5054622 -0.482337124 VGMADANS(ph)PPKPLSKPR ddPTM_HeLa_A486_30min_R1 2 VGMADANSPPKPLSKPR 17 2 P26358;P26358-2;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 VGMADANS(1)PPKPLSKPR;VGMADANS(0.999)PPKPLS(0.001)KPR ; 133.21 4.32E-06 1087810000 1276020 1243440 551400 736350 969100 1481020 1896480 1653100 1080530 2115800 TRUE FALSE FALSE 1186577.587 1144905.286 764916.847 1714260.013 847546.4415 1298306.81 1421960.645 1276725.217 1174191.21 1585989.908 0.74816213 0.721886867 0.482296163 1.080876999 0.53439586 0.818609755 0.896576099 0.805002106 0.740352258 1 20.59695216 -13.99999988 0.092637019 1.779807653 0.570381685 0.198240799 0.15751716 331.784922 2.120346326 50.70202726 3.291550685 1.00E-14 13.99999988 -1.209425968 VGNES(ph)PVQELK ddPTM_HeLa_A485_30min_R1 5 VGNESPVQELK 11 0 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK ;;;; 272.06 1.30E-34 5309910000 4204620 2633940 2273710 7622260 4108180 2876050 4809470 3034490 3318920 9002060 TRUE FALSE FALSE 5139923.213 2941956.371 3114849.946 8038644.763 3699155.175 3026635.531 3781887.445 2290276.57 3984996.801 6758012.113 0.760567328 0.435328662 0.460912158 1.189498425 0.547373268 0.44785885 0.559615369 0.338897968 0.58966997 1 22.68816751 -10.28413709 6.484503777 1.00000941 0.587313256 0.224854695 0.226990335 3.19E-05 3.52E-06 0.226718134 0.054985972 5.20E-11 10.28413709 -0.412696154 VGNES(ph)PVQELK ddPTM_HeLa_A486_30min_R1 6 VGNESPVQELK 11 0 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK;VGNES(1)PVQELK ;;;;; 263.27 1.50E-27 8769200000 9741900 10592570 4596040 4869080 8304590 12645550 14221900 12847960 8141570 14608600 TRUE FALSE FALSE 9059043.117 9753176.176 6375749.774 11335464.31 7262950.885 11085470.61 10663430.2 9922759.977 8847287.843 10950511.47 0.827271232 0.890659418 0.582233057 1.035153868 0.663252205 1.01232446 0.973783756 0.9061458 0.807933754 1 23.38449492 -6.281007343 24.93423604 0.936280798 0.805764186 0.235257075 0.126172723 1289.198612 1642740.159 0.042616916 0.037638311 5.24E-07 6.281007343 -0.130516612 VGNES(ph)PVQELKQDVSK ddPTM_HeLa_A485_30min_R1 3 VGNESPVQELKQDVSK 16 1 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELKQDVSK;VGNES(1)PVQELKQDVSK;VGNES(1)PVQELKQDVSK ;; 126.02 1.06E-05 375165000 179235 171577 98149 244393 233204 222377 401360 387808 163261 334224 TRUE FALSE FALSE 219105.2074 191641.4376 134458.3994 257743.5708 209985.3909 234020.3159 315606.1572 292697.4799 196025.9852 250908.1077 0.873248814 0.763791331 0.535887025 1.027242894 0.836901577 0.932693319 1.257855555 1.166552498 0.781266046 1 17.93679956 -5.885019178 1.293823673 1.053585399 0.748345622 0.335959604 0.161589883 0.480319903 1.685740537 0.068816524 0.086898203 1.30E-06 5.885019178 -0.305239777 VGNES(ph)PVQELKQDVSK ddPTM_HeLa_A486_30min_R1 3 VGNESPVQELKQDVSK 16 1 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELKQDVSK;VGNES(1)PVQELKQDVSK;VGNES(1)PVQELKQDVSK ;; 172.42 1.32E-12 349140000 408648 298251 125406 200179 328443 353137 561203 566463 204302 611301 TRUE FALSE FALSE 380003.8855 274616.5045 173966.5617 466026.8285 287246.6163 309570.5474 420784.0736 437491.7407 222011.0619 458227.2507 0.829291328 0.599301993 0.379651279 1.0170212 0.62686498 0.675583015 0.918286883 0.954748414 0.48449991 1 18.80570373 -5.938650687 0.874013822 0.821669963 0.64198831 0.088043107 0.205121038 1.532849984 2.572342821 0.113050825 0.149931288 1.15E-06 5.938650687 -0.179681654 VGNES(ph)PVQELKQDVSKK ddPTM_HeLa_A485_30min_R1 1 VGNESPVQELKQDVSKK 17 2 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELKQDVSKK 87.319 0.00046889 160050000 88642 88101 38808 91315 110900 155450 265880 381710 82194 152520 TRUE FALSE FALSE 108360.1071 98403.64557 53164.69414 96303.30723 99858.40661 163589.1216 209072.566 288095.024 98689.58187 114499.5709 0.946380028 0.859423706 0.464322213 0.841080071 0.87212909 1.428731307 1.825968117 2.516123176 0.861920976 1 16.80498267 -6.320000322 2.790283156 1.6740083 0.769136841 0.392147153 0.446089627 0.246981459 3.797329547 0.166082149 0.148200064 4.79E-07 6.320000322 -0.904871459 VGPAT(ph)PSAQVGK ddPTM_HeLa_A485_30min_R1 3 VGPATPSAQVGK 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 VGPAT(0.808)PS(0.192)AQVGK;VGPAT(0.999)PS(0.001)AQVGK;VGPAT(0.953)PS(0.047)AQVGK ;; 207.04 1.32E-16 1799930000 3561700 3039420 2197250 3899900 3468300 3005470 3804900 3386200 2434110 4704300 TRUE FALSE FALSE 4353987.877 3394853.73 3010104.21 4112941.662 3122983.874 3162831.762 2991952.032 2555729.141 2922613.55 3531604.586 1.232863921 0.961277982 0.852333305 1.164609899 0.884296018 0.895579243 0.847193382 0.723673638 0.827559677 1 21.75189239 -5.930878239 8.369222319 0.846167483 1.031837188 0.381577235 0.116926379 0.30319623 32.86375723 0.036628191 0.041564871 1.17E-06 5.930878239 0.185669705 VGPAT(ph)PSAQVGK ddPTM_HeLa_A486_30min_R1 4 VGPATPSAQVGK 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 VGPAT(0.721)PS(0.279)AQVGK;VGPAT(0.872)PS(0.128)AQVGK;VGPAT(0.935)PS(0.065)AQVGK;VGPAT(0.993)PS(0.007)AQVGK ;;; 164.93 1.17E-09 2232830000 4575660 4628000 2375450 1499930 3661240 4620070 4696260 4467790 3557530 5531200 TRUE FALSE FALSE 4254929.863 4261260.425 3295287.857 3491912.842 3202013.139 4050092.737 3521206.076 3450571.748 3865899.565 4146151.518 1.026235979 1.027762832 0.794782304 0.842205797 0.772285606 0.976831821 0.849270959 0.832234841 0.932406727 1 21.98334141 -4.744748968 24.93715847 0.86688869 1.026999564 0.419758803 0.07097147 204.1296131 304985.2604 0.017425362 0.045825163 1.80E-05 4.744748968 0.160110874 VGPATPS(ph)AQVGK ddPTM_HeLa_A485_30min_R1 1 VGPATPSAQVGK 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 VGPAT(0.135)PS(0.865)AQVGK 147.7 1.62E-07 674250000 1084700 910410 660920 1169900 1037700 995030 1127100 1056200 793390 1402000 TRUE FALSE FALSE 1325987.773 1016874.53 905421.8112 1233808.675 934382.9444 1047128.232 886285.8774 797165.2939 952616.0956 1052507.202 1.259837244 0.966144961 0.860252366 1.172256753 0.887768694 0.994889375 0.842071081 0.757396522 0.905092235 1 20.00539867 -6.245422329 1.333910702 0.861509441 1.041914009 0.258949175 0.124967205 0.594267974 2.143737731 0.058864125 0.053827413 5.68E-07 6.245422329 0.180404567 VGPCS(ph)SPPAAR ddPTM_HeLa_A485_30min_R1 1 VGPCSSPPAAR 11 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 VGPCS(0.624)S(0.376)PPAAR 136.5 1.97E-05 603920000 334420 404010 382000 366270 535140 443680 500010 514800 407750 526870 TRUE FALSE FALSE 408810.5753 451255.4551 523317.6963 386278.4027 481859.5826 466910.3987 393178.7788 388544.4928 489581.6849 395531.0053 1.03357403 1.140885162 1.323076293 0.976607137 1.21825995 1.180464723 0.994052991 0.982336372 1.23778333 1 18.59343127 -6.75167873 24.99836234 1.052071199 1.148974115 0.139493847 0.111636115 397.0882006 1016999.438 0.04233327 0.032381658 1.77E-07 6.75167873 0.096902916 VGPCS(ph)SPPAAR ddPTM_HeLa_A486_30min_R1 3 VGPCSSPPAAR 11 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 VGPCS(0.5)S(0.5)PPAAR;VGPCS(0.5)S(0.5)PPAAR;VGPCS(0.5)S(0.5)PPAAR ;; 97.734 0.0015704 664950000 660810 713400 548760 274517 817000 722200 774830 805490 651680 830730 TRUE FALSE FALSE 614490.6314 656867.5858 761254.5683 639089.4493 714524.2418 633102.3068 580959.3387 622097.5107 708168.1471 622709.8009 0.986800963 1.054853457 1.222486891 1.026303823 1.147443385 1.016689164 0.932953581 0.999016733 1.137236231 1 19.24820046 -6.378979096 8.716270173 1.01131945 1.0897633 0.171375476 0.076857912 0.560227297 38.41337902 0.027553761 0.024272558 4.18E-07 6.378979096 0.07844385 VGPCSS(ph)PPAAR ddPTM_HeLa_A486_30min_R1 2 VGPCSSPPAAR 11 0 Q8TDM6-4;Q8TDM6;A0A0J9YYG8;Q8TDM6-2;A0A0A0MSL1 Q8TDM6-4 DLG5 Disks large homolog 5 1 0 VGPCS(0.168)S(0.832)PPAAR;VGPCS(0.332)S(0.668)PPAAR ; 126.66 5.68E-05 1623920000 806350 931410 741700 281732 1003160 882620 929630 1021690 786260 873830 TRUE FALSE FALSE 749829.029 857601.6795 1028906.103 655886.3339 877334.3187 773731.3182 697026.7414 789073.4903 854413.6499 655017.2803 1.144746943 1.309280999 1.570807572 1.001326764 1.339406371 1.181238025 1.06413489 1.20466057 1.304413907 1 19.32117344 -5.275366874 24.90660878 1.169790907 1.338378783 0.252842589 0.144559733 1105.738898 1977395.637 0.04028203 0.060070307 5.30E-06 5.275366874 0.168587877 VGPGNHGTEGSGGERHS(ph)DTDSDRR ddPTM_HeLa_A485_30min_R1 3 VGPGNHGTEGSGGERHSDTDSDRR 24 2 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 VGPGNHGTEGS(0.004)GGERHS(0.996)DTDSDRR;VGPGNHGTEGS(0.005)GGERHS(0.946)DT(0.024)DS(0.024)DRR;VGPGNHGTEGS(0.177)GGERHS(0.77)DT(0.046)DS(0.007)DRR ;; 236.65 3.61E-49 832621000 181861 200526 126732 153597 147891 132436 144842 156721 151913 372652 TRUE FALSE FALSE 222315.352 223975.7714 173615.4406 161987.6152 133166.4528 139370.1442 113895.3234 118284.929 182400.5457 279756.7146 0.794673874 0.8006091 0.620594365 0.579030303 0.476008066 0.498183375 0.407122752 0.422813548 0.651997025 1 18.09381323 -10.52374139 6.838032696 1.00023523 0.575219374 0.471741976 0.131981236 0.000537714 3.75E-05 0.145181569 0.035192699 2.99E-11 10.52374139 -0.425015856 VGPGNHGTEGSGGERHS(ph)DTDSDRR ddPTM_HeLa_A486_30min_R1 1 VGPGNHGTEGSGGERHSDTDSDRR 24 2 Q99442 Q99442 SEC62 Translocation protein SEC62 1 0 VGPGNHGTEGSGGERHS(1)DTDSDRR 250.24 5.05E-50 482920000 254210 254910 188170 11108 226890 202350 171630 135670 270530 160040 TRUE FALSE FALSE 236391.1917 234710.0032 261034.4634 25859.98537 198431.3405 177386.1143 128686.3587 104780.9027 293979.7582 119964.9423 1.970502275 1.956488277 2.175922885 0.215562854 1.654077739 1.478649603 1.072699709 0.873429359 2.450547239 1 16.87225334 VGQFGQHYQSSASSSSSSSFPS(ph)PQR ddPTM_HeLa_A486_30min_R1 1 VGQFGQHYQSSASSSSSSSFPSPQR 25 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 VGQFGQHYQSSASS(0.001)S(0.001)S(0.001)S(0.002)S(0.002)S(0.002)FPS(0.99)PQR 56.041 0.022152 77083000 41491 40335 40678 5193.8 47735 32532 44695 38569 43126 40349 TRUE FALSE FALSE 38582.69516 37138.7077 56429.61099 12091.42888 41747.63119 28518.5326 33511.83826 29787.68066 46864.1964 30245.34777 1.275657184 1.227914719 1.865728621 0.39977814 1.380299261 0.94290642 1.107999766 0.984868181 1.54946793 1 14.88442563 -5.236047239 24.99722851 1.063001185 1.433581475 0.24368014 0.325223738 1178.862535 1160526.707 0.084054582 0.14551527 5.81E-06 5.236047239 0.37058029 VGQQAIVLCIS(ph)PSKPNPVFK ddPTM_HeLa_A485_30min_R1 2 VGQQAIVLCISPSKPNPVFK 20 1 C9JP85;Q16656-2;Q16656;Q16656-4 C9JP85 NRF1 Nuclear respiratory factor 1 1 0 VGQQAIVLCIS(0.92)PS(0.08)KPNPVFK;VGQQAIVLCIS(0.878)PS(0.122)KPNPVFK ; 229.66 3.75E-36 1254240000 619210 439033 324101 894400 772010 600130 1012020 968580 542720 1180090 TRUE FALSE FALSE 756951.1283 490374.0903 443999.4469 943258.8073 695145.9737 631551.8788 795793.6596 731034.2363 651638.9259 885915.2809 0.854428346 0.553522556 0.501175966 1.064728002 0.784664164 0.71288067 0.898272867 0.825173978 0.735554448 1 19.75680922 -8.815214885 0.04064687 1.770307879 9.47E-06 0.189742968 0.151928363 286.5944058 4.000037351 97.78772499 75.5702436 1.53E-09 8.815214885 -1.770298407 VGQQAIVLCIS(ph)PSKPNPVFK ddPTM_HeLa_A486_30min_R1 2 VGQQAIVLCISPSKPNPVFK 20 1 C9JP85;Q16656-2;Q16656;Q16656-4 C9JP85 NRF1 Nuclear respiratory factor 1 1 0 VGQQAIVLCIS(0.996)PS(0.004)KPNPVFK;VGQQAIVLCIS(0.996)PS(0.004)KPNPVFK ; 174.47 3.29E-14 2111880000 874190 934230 399300 505690 878200 1093780 1334940 1279600 683420 1326620 TRUE FALSE FALSE 812913.7953 860198.2124 553919.6536 1177271.876 768047.9671 958840.5443 1000923.892 988263.0135 742659.3959 994425.7172 0.817470608 0.865020079 0.557024667 1.183871109 0.772353283 0.964215353 1.006534601 0.993802751 0.746822395 1 19.92350408 -5.254924049 24.9955628 0.947487686 0.758356639 0.316822087 0.138163268 671.7455971 2577092.548 0.036299484 0.061034361 5.56E-06 5.254924049 -0.189131047 VGRLS(ph)LQDVPELVDAK ddPTM_HeLa_A485_30min_R1 2 VGRLSLQDVPELVDAK 16 1 Q8N5W9 Q8N5W9 FAM101B Filamin-interacting protein FAM101B 1 0 VGRLS(1)LQDVPELVDAK;VGRLS(1)LQDVPELVDAK ; 104.86 0.00013027 47398000 64532 65756 57768 96176 93077 74482 113866 121823 66510 134982 TRUE FALSE FALSE 78886.92077 73445.5922 79138.78713 101429.8513 83809.92707 78381.76235 89537.5989 91945.71824 79857.94693 101333.4716 0.778488288 0.72479104 0.780973808 1.000951115 0.82707052 0.773503179 0.883593521 0.907357824 0.78807077 1 16.62875127 -14 0.023365724 2.114695608 2.08E-08 0.345439392 0.074743781 2954.527756 5.205722166 333.770183 164.8060311 1.00E-14 14 -2.114695588 VGRLS(ph)LQDVPELVDAK ddPTM_HeLa_A486_30min_R1 1 VGRLSLQDVPELVDAK 16 1 Q8N5W9 Q8N5W9 FAM101B Filamin-interacting protein FAM101B 1 0 VGRLS(1)LQDVPELVDAK 117.64 4.71E-05 34966000 64084 65071 43596 36863 73031 81810 113190 100710 58182 93608 TRUE FALSE FALSE 59592.04253 59914.53698 60477.53874 85818.92695 63870.77099 71717.11398 84868.6648 77780.53148 63225.26261 70167.94751 0.849277265 0.853873301 0.861896933 1.223050267 0.910255655 1.022077979 1.209507586 1.108490903 0.901056178 1 16.09852454 -5.14416917 9.761785702 1.057156692 0.853344401 0.44327253 0.101903159 0.348674634 27.09836372 0.027701726 0.048069427 7.18E-06 5.14416917 -0.203812291 VGRPTASK(ac)ASK ddPTM_HeLa_A485_30min_R1 2 VGRPTASKASK 11 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; VGRPTASK(1)ASK;VGRPTASK(1)ASK 133.15 0.0040168 132435000 63094 69839 58216 81588 94553 108705 179469 238890 179019 344070 FALSE TRUE FALSE 77129.04263 78006.06353 79752.52097 86044.94585 85138.97132 114396.6257 141123.982 180301.8529 214946.4712 258299.6811 0.298602934 0.301998296 0.308759657 0.333120604 0.329613149 0.442883341 0.546357554 0.698033587 0.832159259 1 17.97868634 -7.345273397 0.753564969 1.000367354 0.295827658 0.998221658 0.010132653 0.023552801 0.025773147 0.009525368 0.004309394 4.52E-08 7.345273397 -0.704539695 down VGRPTASK(ac)ASK ddPTM_HeLa_A486_30min_R1 2 VGRPTASKASK 11 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; VGRPTASK(1)ASK;VGRPTASK(1)ASK 133.98 0.0037904 220320000 208680 243700 165234 101010 282560 296660 315720 328030 242240 329990 FALSE TRUE FALSE 194052.6096 224388.3245 229217.0299 235156.3848 247118.69 260061.1054 236723.5167 253344.7298 263237.5582 247358.3561 0.784499916 0.907138647 0.92665974 0.950670875 0.999031098 1.051353629 0.957006346 1.024201219 1.064195131 1 17.91624311 -2.858684835 0.473316749 1.025286114 9.17E-17 0.850730094 0.030133225 5.949563449 0.365099345 0.018550405 4.530858547 0.001384571 2.858684835 -1.025286114 VGS(ph)HPEGGASWLSTAANFLSR ddPTM_HeLa_A486_30min_R1 1 VGSHPEGGASWLSTAANFLSR 21 0 Q9NVT9-2;Q9NVT9 Q9NVT9-2 ARMC1 Armadillo repeat-containing protein 1 1 0 VGS(0.992)HPEGGAS(0.008)WLSTAANFLSR 59.359 0.015641 83819000 33235 26260 14617 23915 28787 26473 34991 29213 21867 39404 TRUE FALSE FALSE 30905.39813 24179.06196 20277.09386 55675.3286 25176.26603 23207.03042 26235.8817 22561.83762 23762.44917 29536.98192 1.046328911 0.818602998 0.686498502 1.884936272 0.852364202 0.785694032 0.888238405 0.763850473 0.804498213 1 14.8502348 -5.954825484 24.9999921 0.83427129 1.096968325 0.150319048 0.301332757 263.995409 146096.2517 0.096195719 0.109075651 1.11E-06 5.954825484 0.262697034 VGS(ph)LDNVGHLPAGGAVK ddPTM_HeLa_A485_30min_R1 4 VGSLDNVGHLPAGGAVK 17 0 E7EVA0;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK ;;; 186.63 6.88E-18 8232300000 6672400 5048310 3310560 12107100 7222600 6164600 10133800 9251400 4721330 16559600 TRUE FALSE FALSE 8156652.36 5638665.94 4535273.908 12768480.22 6503492.584 6487368.924 7968630.844 6982479.644 5668857.624 12431596.48 0.656122677 0.453575367 0.364818301 1.027098992 0.523142188 0.521845198 0.64099819 0.561671999 0.456003992 1 23.56750824 -10.2287397 4.263555539 1.000206953 0.57967591 0.352386854 0.17146907 48058130.26 57648610.74 79943.29036 0.041413432 5.91E-11 10.2287397 -0.420531043 VGS(ph)LDNVGHLPAGGAVK ddPTM_HeLa_A486_30min_R1 4 VGSLDNVGHLPAGGAVK 17 0 E7EVA0;P27816-4;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK ;;; 164.94 4.77E-12 6814870000 11902400 11135190 5025690 10307070 9804590 14007100 20030430 17432640 9489170 26780900 TRUE FALSE FALSE 11068103.22 10252796.99 6971771.761 23995379.85 8574806.898 12279046.42 15018604.55 13463608.42 10311698.9 20074788.33 0.551343458 0.510730017 0.347289926 1.195299271 0.427143079 0.611665051 0.748132648 0.670672498 0.513664141 1 24.25888144 -14 0.274657953 3.605449347 0.599961635 0.205138989 0.221961313 365.4067726 3.533585362 542.2066878 0.263819188 1.00E-14 14 -3.005487712 VGS(ph)PATVTFQQNK ddPTM_HeLa_A486_30min_R1 1 VGSPATVTFQQNK 13 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;J3QQK4 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 VGS(1)PATVTFQQNK 234.85 8.88E-35 97866000 95258 85605 39378 75544 80204 97214 145720 117010 66475 174740 TRUE FALSE FALSE 88580.90611 78821.34803 54626.21618 175870.2498 70144.06645 85220.72508 109259.3147 90369.37731 72237.10652 130983.9666 0.676272893 0.601763331 0.41704506 1.342685325 0.535516432 0.650619517 0.834142663 0.689927017 0.551495793 1 16.9990307 -11.42585663 2.16396444 3.463010472 0.705003047 0.123550127 0.239414802 7697882.296 684723.3921 92992725.46 0.059018708 3.75E-12 11.42585663 -2.758007425 VGS(ph)PLDYSLVDLPSTNGQS(ph)PGKAIENLIGKPTEK ddPTM_HeLa_A486_30min_R1 1 VGSPLDYSLVDLPSTNGQSPGKAIENLIGKPTEK 34 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 VGS(1)PLDYSLVDLPS(0.246)T(0.224)NGQS(0.53)PGKAIENLIGKPTEK 98.996 8.12E-05 103810000 35488 31753 9766.7 58495 27196 47226 90255 78408 21871 105750 TRUE FALSE FALSE 33000.47446 29236.77664 13548.6278 136179.3162 23784.82409 41399.73628 67672.24438 60556.21003 23766.79589 79269.51168 0.416307276 0.36882751 0.170918522 1.717928032 0.30005009 0.522265565 0.853698262 0.763928133 0.299822661 1 16.27447847 VGS(ph)PLTLTDAQTR ddPTM_HeLa_A485_30min_R1 3 VGSPLTLTDAQTR 13 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VGS(0.999)PLT(0.001)LTDAQTR;VGS(0.998)PLT(0.002)LTDAQTR;VGS(0.963)PLT(0.026)LT(0.011)DAQTR ;; 287.88 1.69E-49 1024960000 570640 513320 382181 902000 532140 449180 800390 693500 429220 1561810 TRUE FALSE FALSE 697576.8993 573348.3087 523565.6558 951273.976 479158.2731 472698.3702 629380.1379 523418.0376 515360.517 1172479.51 0.594958712 0.489004971 0.446545676 0.811335267 0.408670914 0.403161306 0.536794147 0.446419774 0.439547568 1 20.16113128 -10.29160161 3.799050366 1.001000083 0.507977855 0.618906629 0.115704853 160881152.3 322462547 1935006.613 0.029117382 5.11E-11 10.29160161 -0.493022228 VGS(ph)PLTLTDAQTR ddPTM_HeLa_A486_30min_R1 3 VGSPLTLTDAQTR 13 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VGS(1)PLTLTDAQTR;VGS(1)PLTLTDAQTR;VGS(1)PLTLTDAQTR ;; 193.45 9.73E-18 766360000 382315 366773 216341 252067 381326 428653 489353 469381 326239 760920 TRUE FALSE FALSE 355516.6928 337708.5717 300114.029 586824.7148 333496.5374 375770.1511 366911.7036 362513.1928 354517.6592 570380.6792 0.623297222 0.592075756 0.526164437 1.028829931 0.584691154 0.65880589 0.643275126 0.635563591 0.621545701 1 19.12156559 -10.79606313 2.805886304 1.091262243 0.65918095 0.386466202 0.129576452 57185911.34 44917317.66 35639302.2 0.032466687 1.60E-11 10.79606313 -0.432081293 VGS(ph)PQPSSSGGEK ddPTM_HeLa_A485_30min_R1 2 VGSPQPSSSGGEK 13 0 V9GYB6;O94761 V9GYB6 RECQL4 ATP-dependent DNA helicase Q4 1 0 VGS(1)PQPSSSGGEK;VGS(1)PQPSSSGGEK ; 101.72 0.00066854 769330000 517070 423440 341030 825710 609490 556540 779750 755190 451640 1099830 TRUE FALSE FALSE 632090.4376 472957.6246 467191.1884 870816.4465 548807.0356 585679.5738 613150.0425 569978.4684 542280.0053 825662.6219 0.76555535 0.572821891 0.565837881 1.054687984 0.664686787 0.709344905 0.74261572 0.690328535 0.656781585 1 19.65519287 -10.58645208 2.639499901 1.023151667 0.713773692 0.305592072 0.129504862 27903317.09 25941635.74 4503492.1 0.032651463 2.59E-11 10.58645208 -0.309377974 VGS(ph)PQPSSSGGEK ddPTM_HeLa_A486_30min_R1 3 VGSPQPSSSGGEK 13 0 V9GYB6;O94761 V9GYB6 RECQL4 ATP-dependent DNA helicase Q4 1 0 VGS(0.997)PQPS(0.002)SSGGEK;VGS(0.974)PQPS(0.01)S(0.013)S(0.003)GGEK;VGS(0.98)PQPS(0.011)S(0.004)S(0.005)GGEK ;; 173.19 2.86E-12 1163630000 1252890 1305440 713500 850680 1334550 1578030 1812550 1706840 1017070 2262490 TRUE FALSE FALSE 1165068.881 1201992.18 989786.3082 1980426.031 1167158.295 1383348.703 1359030.819 1318229.792 1105230.447 1695947.778 0.686972144 0.708743628 0.583618388 1.167739984 0.688204148 0.815678832 0.801340016 0.777282066 0.651688962 1 20.69366032 -11.45472487 2.242607045 3.405509891 0.770188577 0.179041671 0.150801102 7691587.386 778475.7753 93923377.21 0.039589984 3.51E-12 11.45472487 -2.635321314 VGS(ph)TENIK ddPTM_HeLa_A485_30min_R1 1 VGSTENIK 8 0 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(0.991)T(0.009)ENIK 155.11 0.00013855 1239800000 1366400 726900 621730 3291400 1378300 851300 1610300 1038100 875930 4189500 TRUE FALSE FALSE 1670350.966 811904.6318 851733.7993 3471200.848 1241071.612 895872.7516 1266246.25 783504.3473 1051721.116 3145134.752 0.531090429 0.258146215 0.270809955 1.103673172 0.394600458 0.284843996 0.402604769 0.249116305 0.334396202 1 21.5846904 -10.54868392 3.908204914 1.009903579 0.425048217 0.337290968 0.241594769 354414140.8 325042.9002 31583045.29 0.060712541 2.83E-11 10.54868392 -0.584855362 VGS(ph)TENIK ddPTM_HeLa_A486_30min_R1 3 VGSTENIK 8 0 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(0.985)T(0.015)ENIK;VGS(0.977)T(0.023)ENIK;VGS(0.5)T(0.5)ENIK ;; 155.11 0.00013855 2091710000 1210420 1591390 734250 1369254 1379200 2084900 2609200 2253890 1350950 3127340 TRUE FALSE FALSE 1125575.809 1465282.461 1018571.264 3187692.51 1206207.875 1827686.236 1956350.563 1740728.449 1468051.434 2344233.708 0.480146585 0.625058182 0.434500733 1.359801499 0.514542501 0.779651888 0.83453734 0.742557554 0.626239367 1 21.16068498 VGS(ph)TENIKHQPGGGR ddPTM_HeLa_A485_30min_R1 1 VGSTENIKHQPGGGR 15 1 E7EVA0;H7C4C5;H0Y2V1;F8W9U4;P27816;P27816-6;P27816-2 E7EVA0;P27816 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(0.957)T(0.043)ENIKHQPGGGR 73.057 0.0040208 210410000 64117 86982 44998 63897 97996 113170 157850 188540 51209 108730 TRUE FALSE FALSE 78379.60545 97153.78826 61644.63272 67387.53131 88239.17416 119095.4062 124124.058 142300.2694 61486.17658 81625.61203 0.960232989 1.190236567 0.75521189 0.825568466 1.081023125 1.459044573 1.52065087 1.743328667 0.753270635 1 16.31673428 -6.076038541 4.483073784 1.353356151 0.939014427 0.259517035 0.280671802 0.271573583 10.11820082 0.093230219 0.095094839 8.39E-07 6.076038541 -0.414341723 VGS(ph)VGHKMNLTGNDQEGRESK ddPTM_HeLa_A485_30min_R1 1 VGSVGHKMNLTGNDQEGRESK 21 2 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 0 VGS(0.5)VGHKMNLT(0.5)GNDQEGRESK 42.806 0.028501 229560000 127060 60666 46544 376330 82348 114280 168680 143780 73195 341210 TRUE FALSE FALSE 155324.0586 67760.36098 63762.56246 396887.955 74149.14398 120263.5241 132640.14 108517.7296 87884.56512 256152.6265 0.606373086 0.264531197 0.248924102 1.549419814 0.289472511 0.469499477 0.517816826 0.423644805 0.34309453 1 17.96664416 -10.46295355 3.222301848 1.008796239 0.526518758 0.135531754 0.36085245 217914811.7 268599350.5 17160402.76 0.089015346 3.44E-11 10.46295355 -0.482277481 VGSAAPSRSPSETGRQAGR ddPTM_HeLa_A485_30min_R1 2 VGSAAPSRSPSETGRQAGR 19 2 Q9UBU6 Q9UBU6 FAM8A1 Protein FAM8A1 0 0 ; ; 73.464 0.034974 423690000 257900 239330 451780 408110 629100 245440 376850 334050 381890 530010 FALSE FALSE TRUE 315268.9653 267317.5616 618912.2221 430404.0159 566464.5951 258290.8589 296332.9189 252123.7137 458531.8201 397888.2611 0.792355533 0.671840785 1.555492541 1.08172082 1.423677576 0.649154258 0.744764166 0.633654567 1.152413541 1 18.60200381 -6.282466366 24.99848257 0.807398653 1.104684261 0.179982658 0.283848006 1398.751145 1662936.189 0.103250379 0.091147613 5.22E-07 6.282466366 0.297285608 VGSAAPSRSPSETGRQAGR ddPTM_HeLa_A486_30min_R1 1 VGSAAPSRSPSETGRQAGR 19 2 Q9UBU6 Q9UBU6 FAM8A1 Protein FAM8A1 0 0 99.569 0.00082282 328180000 89907 226120 251330 73937 313780 212040 240720 264450 199740 155820 FALSE FALSE TRUE 83604.98358 208201.4277 348651.7069 172129.0726 274422.7865 185880.6607 180489.3099 204240.5079 217053.624 116801.6578 0.715785933 1.78252117 2.98498937 1.473686897 2.349476812 1.591421425 1.545263255 1.748609667 1.858309446 1 16.83370123 VGSAQPS(ph)PPDDLDAGGLAQR ddPTM_HeLa_A485_30min_R1 1 VGSAQPSPPDDLDAGGLAQR 20 0 Q8N3D4;E9PIH6;H0YDZ9;A0A0U1RQH4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 VGS(0.348)AQPS(0.652)PPDDLDAGGLAQR 74.649 0.0037448 111210000 70081 89341 89433 62834 130990 101200 115150 152820 93444 110180 TRUE FALSE FALSE 85670.27667 99788.65279 122517.9883 66266.46232 117948.1757 106498.6755 90547.26181 115340.6554 112197.3537 82714.15371 1.035739022 1.206427779 1.481221566 0.801150218 1.425973311 1.287550809 1.09470094 1.394448836 1.356446855 1 16.3358466 VGSAQPS(ph)PPDDLDAGGLAQR ddPTM_HeLa_A486_30min_R1 1 VGSAQPSPPDDLDAGGLAQR 20 0 Q8N3D4;E9PIH6;H0YDZ9;A0A0U1RQH4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 VGS(0.172)AQPS(0.828)PPDDLDAGGLAQR 109.72 2.86E-05 93669000 110810 116320 97452 27820 128240 104630 119320 108930 104680 106930 TRUE FALSE FALSE 103042.7912 107102.3796 135188.0243 64766.36594 112154.9434 91721.8144 89464.87396 84129.01693 113753.7467 80154.032 1.285559674 1.336207012 1.686602918 0.808023805 1.399242691 1.144319407 1.116161866 1.049591827 1.419189326 1 16.29048747 -5.251450763 24.9696839 1.146620934 1.426131547 0.333743158 0.195012054 836.8544184 2091976.004 0.050852844 0.086755661 5.60E-06 5.251450763 0.279510613 VGSFYR ddPTM_HeLa_A485_30min_R1 2 VGSFYR 6 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 0 0 ; ; 113.97 0.027145 102399000 90737 171768 199918 36070 378540 41987 184834 103272 115838 208747 FALSE FALSE TRUE 110921.1326 191854.7734 273875.9875 38040.41277 340851.2285 44185.3744 145342.7059 77944.38008 139085.6241 156710.2146 0.707810482 1.224264633 1.747658812 0.242743671 2.175041553 0.281955931 0.927461597 0.497379065 0.887533875 1 17.25773969 VGSFYR ddPTM_HeLa_A486_30min_R1 2 VGSFYR 6 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 0 0 ; ; 118.18 0.022196 67240000 154409 111902 124783 9230 134199 81652 111202 129442 163429 92343 FALSE FALSE TRUE 143585.7265 103034.478 173102.3194 21487.90646 117366.5101 71578.60642 83378.08343 99970.8823 177595.1573 69219.71175 2.074347362 1.488513537 2.500766256 0.310430453 1.695564849 1.034078366 1.204542482 1.444254531 2.565673171 1 16.07889531 -5.224315963 24.99996153 1.339252089 1.967939253 0.227371299 0.587538475 961.9941252 647832.9949 0.156088296 0.270344814 5.97E-06 5.224315963 0.628687164 VGSLPLEKGS(ph)PVTTTK ddPTM_HeLa_A486_30min_R1 1 VGSLPLEKGSPVTTTK 16 1 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 VGSLPLEKGS(0.822)PVT(0.134)T(0.035)T(0.009)K 101.38 0.00021321 514980000 409660 341610 162300 174820 431140 484750 424220 423600 359520 769220 TRUE FALSE FALSE 380944.9495 314539.5795 225146.9065 406989.7949 377062.401 424946.4736 318075.6691 327155.5271 390683.4831 576602.3052 0.660671916 0.545505241 0.390471742 0.705841429 0.653938421 0.736983654 0.551637873 0.567385049 0.677561431 1 19.13721708 -14 0.265943972 3.637487054 0.577114856 0.612322411 0.094188805 145.0544846 1.418219425 209.5385596 0.127560168 1.00E-14 14 -3.060372199 VGSLPLEKGSPVT(ph)TTK ddPTM_HeLa_A485_30min_R1 2 VGSLPLEKGSPVTTTK 16 1 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 VGSLPLEKGS(0.351)PVT(0.636)T(0.012)TK;VGSLPLEKGS(0.136)PVT(0.7)T(0.136)T(0.027)K ; 177.4 5.49E-13 1043070000 1620410 1247220 590620 2008630 1021350 1743400 2449400 2443300 1154530 4508900 TRUE FALSE FALSE 1980864.614 1393071.53 809114.9157 2118356.371 919660.8078 1834681.728 1926065.68 1844076.844 1386233.581 3384914.21 0.585203787 0.41155298 0.239035575 0.625822765 0.271693978 0.542017202 0.569014622 0.544792786 0.409532855 1 21.69068784 -13.99999997 0.280456823 4.933580877 0.430505883 0.617170933 0.12587997 147.0526061 1.410244267 336.5760345 0.141149795 1.00E-14 13.99999997 -4.503074994 VGSLPLEKGSPVT(ph)TTK ddPTM_HeLa_A486_30min_R1 1 VGSLPLEKGSPVTTTK 16 1 Q7Z2K8;Q7Z2K8-2 Q7Z2K8 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 VGSLPLEKGS(0.012)PVT(0.983)T(0.004)TK 171.07 3.93E-12 504170000 501830 490530 214990 216360 562140 686840 655500 617660 580690 1141600 TRUE FALSE FALSE 466654.3085 451658.6163 298239.8856 503697.0142 491631.1595 602104.6641 491486.9668 477032.3014 631024.6767 855735.9294 0.545325132 0.527801394 0.348518597 0.588612675 0.5745127 0.703610358 0.574344199 0.557452697 0.737405846 1 19.70680614 -14 0.136715036 2.538844747 0.399699483 0.762787672 0.078808682 68.96923906 0.582640844 28.65958929 0.542498082 1.00E-14 14 -2.139145265 VGSLT(ph)PPS(ph)SPK ddPTM_HeLa_A485_30min_R1 4 VGSLTPPSSPK 11 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 2 0 VGS(0.001)LT(0.999)PPS(0.734)S(0.267)PK;VGSLT(1)PPS(0.774)S(0.226)PK;VGSLT(0.998)PPS(0.699)S(0.302)PK;VGS(0.002)LT(0.998)PPS(0.703)S(0.297)PK ;;; 131.17 0.00010334 1847730000 1203090 1104380 737000 2187480 1496230 1171240 2015940 1853410 987050 2876670 TRUE FALSE FALSE 1470713.22 1233527.634 1009646.969 2306976.493 1347260.088 1232564.315 1585217.95 1398858.291 1185141.881 2159569.11 0.681021604 0.571191553 0.467522417 1.068257775 0.623855973 0.570745483 0.734043631 0.647748796 0.548786272 1 21.04231206 -10.38883563 3.36972171 1.002963624 0.659496651 0.306611919 0.154693231 56226686.79 73686781.73 1601629.766 0.039283906 4.08E-11 10.38883563 -0.343466973 VGSLT(ph)PPSS(ph)PK ddPTM_HeLa_A486_30min_R1 5 VGSLTPPSSPK 11 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 2 0 VGSLT(1)PPS(0.129)S(0.871)PK;VGSLT(1)PPS(0.316)S(0.684)PK;VGS(0.002)LT(0.998)PPS(0.231)S(0.769)PK;VGSLT(1)PPS(0.484)S(0.516)PK;VGS(0.001)LT(0.996)PPS(0.228)S(0.775)PK ;;;; 149.69 2.74E-06 2326040000 3086620 3037990 1376190 2225980 2686290 3595540 4924810 4324090 2244050 6055970 TRUE FALSE FALSE 2870263.877 2797248.608 1909087.624 5182193.935 2349350.46 3151958.832 3692570.449 3339589.101 2438566.061 4539515.694 0.632284162 0.616199788 0.420548744 1.141574186 0.517533283 0.694338129 0.813428281 0.735670791 0.537186393 1 22.11410696 -11.46889909 2.173196056 4.299069729 0.684281898 0.206948978 0.188380813 5468906.865 557998.1774 88492550.98 0.047209151 3.40E-12 11.46889909 -3.61478783 VGTEGLVDS(ph)FSQGLER ddPTM_HeLa_A486_30min_R1 2 VGTEGLVDSFSQGLER 16 0 T1ECW5;O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170 T1ECW5 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 1 0 VGTEGLVDS(0.994)FS(0.006)QGLER;VGTEGLVDS(1)FSQGLER ; 203.59 3.08E-25 157813000 110838 131753 106176 46608 129893 132374 134811 144096 116959 138503 TRUE FALSE FALSE 103068.8286 121312.4124 147290.1907 108505.7794 113600.6087 116043.0418 101079.8619 111288.4864 127097.1003 103820.9473 0.992755617 1.168477225 1.418694344 1.045124151 1.094197382 1.117722818 0.973597954 1.071927095 1.224195151 1 16.66373803 VGVAAPPFLGS(ph)PVPFGGFR ddPTM_HeLa_A485_30min_R1 2 VGVAAPPFLGSPVPFGGFR 19 0 Q5T171;Q9BRQ0 Q5T171;Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 VGVAAPPFLGS(1)PVPFGGFR;VGVAAPPFLGS(1)PVPFGGFR ; 169.02 1.44E-12 265490000 66004 85530 77957 59634 117663 82183 87155 100595 70377 82282 TRUE FALSE FALSE 80686.36209 95531.98949 106796.5384 62891.65442 105948.0586 86485.9748 68533.62226 75923.91852 84501.01836 61770.61169 1.306225726 1.546560523 1.728921496 1.01814848 1.715185518 1.40011524 1.109485893 1.229126869 1.367980923 1 15.914633 -7.669963632 0.337830912 0.980989317 1.517911712 0.277981635 0.212395087 1.840981574 0.682815603 0.369060084 0.273264941 2.14E-08 7.669963632 0.536922395 VGVAAPPFLGS(ph)PVPFGGFR ddPTM_HeLa_A486_30min_R1 2 VGVAAPPFLGSPVPFGGFR 19 0 Q5T171;Q9BRQ0 Q5T171;Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 VGVAAPPFLGS(1)PVPFGGFR;VGVAAPPFLGS(1)PVPFGGFR ; 117.07 2.91E-05 272420000 147945 152668 134907 55828 175739 137815 162658 175541 118829 159885 TRUE FALSE FALSE 137574.8195 140570.0317 187146.6033 129970.4054 153696.1759 120812.7865 121959.248 135574.1463 129129.1934 119848.7553 1.147903615 1.172895215 1.561523128 1.084453527 1.28241779 1.008043731 1.017609633 1.131210299 1.07743458 1 16.8708554 -6.258575069 24.95832527 1.053232164 1.253691766 0.39895721 0.124401409 270.2264032 2354637.474 0.042250047 0.040494521 5.51E-07 6.258575069 0.200459603 VGVEASEETPQTSSSSARPGT(ph)PSDHQSQEASQFER ddPTM_HeLa_A485_30min_R1 4 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;Q6Y7W6;I1E4Y6 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 VGVEASEETPQTSSSSARPGT(0.967)PS(0.033)DHQSQEASQFER;VGVEASEETPQTSSSSARPGT(0.972)PS(0.028)DHQSQEASQFER;VGVEASEETPQT(0.001)S(0.02)S(0.02)S(0.111)S(0.111)ARPGT(0.646)PS(0.088)DHQS(0.004)QEASQFER;VGVEASEETPQTSSSSARPGT(0.998)PS(0.002)DHQSQEASQFER ;;; 303.28 5.29E-94 14388970000 1103190 2179840 2560610 433003 2820050 1354990 1680100 1823060 1990810 1020990 TRUE FALSE FALSE 1348590.81 2434753.326 3507886.195 456656.8575 2539275.92 1425935.181 1321132.91 1375951.677 2390347.306 766475.9829 1.759469102 3.176555274 4.576642025 0.595787562 3.31292301 1.860378163 1.72364554 1.795166068 3.118619969 1 19.54788106 -5.261576984 25 1.996319778 3.171455354 0.245238378 1.002433152 18.6626023 3390888.635 0.270348046 0.431565961 5.48E-06 5.261576984 1.175135577 VGVEASEETPQTSSSSARPGT(ph)PSDHQSQEASQFER ddPTM_HeLa_A486_30min_R1 5 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;Q6Y7W6;I1E4Y6 E7ESB6;Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 VGVEASEETPQTSSSSARPGT(0.993)PS(0.007)DHQSQEASQFER;VGVEASEETPQTSSSSARPGT(0.827)PS(0.173)DHQSQEASQFER;VGVEASEETPQTSSSSARPGT(0.885)PS(0.115)DHQSQEASQFER;VGVEASEETPQTSSSSARPGT(0.988)PS(0.012)DHQSQEASQFER;VGVEASEETPQTSSSSARPGT(0.962)PS(0.038)DHQSQEASQFER ;;;; 302.18 6.53E-94 14773720000 1596780 1808440 2073960 85251.3 2417730 1108990 1304130 1322550 1780850 451487 TRUE FALSE FALSE 1484853.968 1665132.628 2877052.855 198469.3348 2114475.759 972174.0892 977822.8803 1021434.236 1935215.512 338431.7165 4.387455121 4.920143553 8.501132471 0.586438342 6.247865244 2.872585641 2.889276721 3.018139808 5.718186025 1 18.36850525 -5.259698069 24.99998242 3.376056005 5.83463349 0.291514538 1.944732691 214.7222687 3082744.139 0.514528743 0.835495039 5.50E-06 5.259698069 2.458577486 VGVFEEIVPMGIS(ph)PK ddPTM_HeLa_A485_30min_R1 2 VGVFEEIVPMGISPK 15 0 Q5T7W7 Q5T7W7 TSTD2 Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 1 0 VGVFEEIVPMGIS(1)PK;VGVFEEIVPMGIS(1)PK ; 217.37 1.81E-33 74355000 138271 114704 92372 207476 183907 122927 212020 207208 110626 295090 TRUE FALSE FALSE 169028.9069 128117.635 126544.2467 218809.8885 165596.5733 129363.2676 166720.195 156389.9131 132827.6235 221529.4937 0.763008591 0.57833218 0.571229792 0.987723507 0.747514792 0.583955055 0.7525869 0.705955268 0.599593405 1 17.75713926 -11.17288534 2.367227104 1.770148385 0.699911646 0.357347954 0.121138117 13230469.2 3200040.983 54569910.65 0.031460724 6.72E-12 11.17288534 -1.070236739 VGVFEEIVPMGIS(ph)PK ddPTM_HeLa_A486_30min_R1 1 VGVFEEIVPMGISPK 15 0 Q5T7W7 Q5T7W7 TSTD2 Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 1 0 VGVFEEIVPMGIS(1)PK 183.6 8.10E-18 37272000 89928 97608 51738 90790 89488 116750 155950 132340 68918 189050 TRUE FALSE FALSE 83624.51159 89873.1866 71772.33919 211363.7083 78263.5806 102346.572 116929.6605 102209.071 74891.86773 141710.6495 0.590107461 0.634202065 0.506471034 1.491516051 0.55227734 0.722222165 0.825129664 0.72125187 0.528484401 1 17.11258865 -11.45593795 2.213973128 3.655359026 0.740236959 0.080210107 0.272196396 28473919.75 1888264.084 380427510.2 0.070303342 3.50E-12 11.45593795 -2.915122067 VGVNGFGR ddPTM_HeLa_A485_30min_R1 2 VGVNGFGR 8 0 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 167.25 0.00012762 645500000 397260 507580 531080 419610 587170 509690 644560 700450 449700 581300 FALSE FALSE TRUE 485629.1165 566937.0656 727548.5921 442532.2318 528709.2931 536376.5803 506844.4904 528663.5392 539950.6651 436392.608 1.112826174 1.299144521 1.667188167 1.014069037 1.211545025 1.229114725 1.161441512 1.211440179 1.237304792 1 18.73526714 -5.306405592 24.99998671 1.167012011 1.35366367 0.284565318 0.14944676 601.4874371 334409.4659 0.042039726 0.062355311 4.94E-06 5.306405592 0.186651659 VGVSSKPDS(ph)SPVLSPGNK ddPTM_HeLa_A486_30min_R1 1 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 VGVS(0.008)S(0.007)KPDS(0.492)S(0.492)PVLS(0.001)PGNK 45.88 0.027845 266230000 114570 122270 40006 89994 120120 143910 196050 194380 83195 267290 TRUE FALSE FALSE 106539.2346 112580.8799 55497.3946 209510.58 105053.4295 126155.8474 146996.2164 150123.9173 90406.40959 200358.8442 0.53174211 0.561896233 0.276989992 1.045676725 0.52432639 0.629649506 0.733664725 0.749275221 0.451222455 1 17.61222667 -14 0.147432575 2.259366308 0.503335851 0.257191267 0.19511601 194.2826263 1.713083555 72.72320991 1.025761934 1.00E-14 14 -1.756030457 VGVSSKPDSS(ph)PVLSPGNK ddPTM_HeLa_A485_30min_R1 2 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 VGVSSKPDS(0.167)S(0.83)PVLS(0.003)PGNK;VGVSSKPDS(0.253)S(0.747)PVLSPGNK ; 202.95 1.42E-25 2084660000 1831040 1321650 901620 2686330 1856110 1981200 2817230 2515150 1511220 4458100 TRUE FALSE FALSE 2238348.531 1476205.471 1235166.758 2833077.406 1671309.171 2084932.568 2215305.796 1898305.519 1814507.992 3346777.715 0.66880705 0.441082616 0.369061486 0.846508985 0.4993786 0.622967148 0.661921999 0.567203944 0.542165673 1 21.6743413 -14 0.373376885 6.668675881 0.568056687 0.495372774 0.126716149 475.8297168 3.649734436 2178.684631 0.088697853 1.00E-14 14 -6.100619194 VGVSSKPDSS(ph)PVLSPGNK ddPTM_HeLa_A486_30min_R1 1 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 VGVSSKPDS(0.252)S(0.748)PVLSPGNK 212.39 3.48E-26 1422400000 2073500 2025900 899330 1043300 2042100 2670400 2890100 2874700 1881000 3539800 TRUE FALSE FALSE 1928158.358 1865360.306 1247574.661 2428855.125 1785960.776 2340953.199 2166966.412 2220193.564 2044046.595 2653411.04 0.726671567 0.703004652 0.470177685 0.915370852 0.673081083 0.882242956 0.816671966 0.836731864 0.770346759 1 21.33941675 -5.277984722 24.98756007 0.828836012 0.640256616 0.455322104 0.103855825 741.2505277 1119469.868 0.028029939 0.04170873 5.27E-06 5.277984722 -0.188579396 VGVWNVPYISNIYLIK ddPTM_HeLa_A486_30min_R1 1 VGVWNVPYISNIYLIK 16 0 Q02809;Q02809-2 Q02809 PLOD1 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1" 0 0 106.49 0.0010821 0 2018.5 3482.5 2187 852.79 3291.9 3178.7 3199.2 2928 2740.3 3138.4 FALSE FALSE TRUE 1877.013574 3206.534017 3033.86497 1985.338218 2878.999206 2786.544313 2398.726322 2261.358318 2977.83141 2352.524212 0.797872159 1.363018497 1.289621146 0.843918293 1.22379153 1.184491236 1.019639377 0.961247627 1.265802662 1 11.19999386 -14 0.280488166 0.209086312 1.116601182 0.022360885 0.184291467 1076.182391 10.32012474 496.4878961 0.208041897 1.00E-14 14 0.90751487 VGWEQLLTTIAR ddPTM_HeLa_A485_30min_R1 2 VGWEQLLTTIAR 12 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H7C5W8;H0YJW3 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 227.37 7.63E-30 33555000 34263 43706 44836 32758 50962 42684 52561 55213 35522 48747 FALSE FALSE TRUE 41884.68614 48817.03651 61422.70218 34547.48659 45888.04434 44918.86824 41330.91297 41671.92518 42650.93957 36595.27002 1.144538245 1.333971207 1.678432818 0.944042401 1.253933755 1.227450111 1.129405875 1.138724353 1.165476838 1 15.15936957 -6.695260824 0.333198585 1.011472825 1.365975128 0.205797689 0.171190947 2.683470098 0.750435711 0.232145741 0.342535202 2.02E-07 6.695260824 0.354502304 VGWEQLLTTIAR ddPTM_HeLa_A486_30min_R1 2 VGWEQLLTTIAR 12 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;P12814-2;P12814;P12814-3;P12814-4;H9KV75;H0YJ11;H7C5W8;H0YJW3 O43707;P12814-2 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 ; ; 202.03 6.75E-14 67989000 28778 39683 39461 11835.9 45387 33528 41780 41277 35352 38997 FALSE FALSE TRUE 26760.81081 36538.37456 54741.356 27554.57335 39694.13924 29391.65625 31326.2021 31879.12817 38416.33982 29231.89737 0.915466091 1.249948783 1.872658326 0.942620077 1.357904988 1.005465224 1.071644502 1.090559664 1.314192484 1 14.83525585 VGYTPDWIFLLR ddPTM_HeLa_A485_30min_R1 1 VGYTPDWIFLLR 12 0 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 90.15 0.027947 6490100 8834.7 9055.8 12969 12039 15135 8980.4 11928 9235.4 11555 20306 FALSE FALSE TRUE 10799.94854 10114.79704 17766.77279 12696.66009 13628.10626 9450.599858 9379.485357 6970.403669 13873.98251 15244.0879 0.708468004 0.663522613 1.165486115 0.832890768 0.893992894 0.619951808 0.615286754 0.457252918 0.91012218 1 13.89596221 -6.256573067 24.83476434 0.680023789 0.858610042 0.08749827 0.192209399 707.7897692 3612140.941 0.064254851 0.062286789 5.54E-07 6.256573067 0.178586254 VGYTPDWIFLLR ddPTM_HeLa_A486_30min_R1 1 VGYTPDWIFLLR 12 0 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 137.95 0.0007617 10248000 9984.9 15518 13871 5104.1 16110 13549 12985 14890 13956 14379 FALSE FALSE TRUE 9285.010072 14288.29716 19242.22268 11882.60275 14089.33358 11877.46214 9736.015659 11499.87205 15165.71732 10778.40481 0.861445663 1.32564117 1.785257004 1.102445395 1.307181706 1.101968459 0.903289107 1.066936365 1.407046552 1 13.39585606 -6.27828102 6.489830173 1.087241086 1.298031881 0.11422074 0.247263455 0.358501446 69.28689507 0.088987635 0.081163184 5.27E-07 6.27828102 0.210790795 VHAALVYHK ddPTM_HeLa_A486_30min_R1 2 VHAALVYHK 9 0 Q12972 Q12972 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 0 ; ; 87.616 0.012671 10812800 6364.8 6865.4 6122.7 3441.7 8319 7898.3 8689.6 7848.3 6304.4 8976.9 FALSE FALSE TRUE 5918.660388 6321.360701 8493.573412 8012.451534 7275.553448 6923.88805 6515.370171 6061.413417 6850.870468 6729.02581 0.879571658 0.93941692 1.262229281 1.190729797 1.08121943 1.028958462 0.968248652 0.900786174 1.018107325 1 12.71618194 -6.571625061 2.913897521 0.963318053 1.079839008 0.155667044 0.106636899 0.496726298 8.597504784 0.049015658 0.037564516 2.68E-07 6.571625061 0.116520954 VHAPGLNLS(ph)GVGGK ddPTM_HeLa_A485_30min_R1 1 VHAPGLNLSGVGGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VHAPGLNLS(1)GVGGK 135.18 8.26E-06 332720000 429690 433730 321400 474380 532540 494620 620790 704440 432940 744990 TRUE FALSE FALSE 525273.0581 484450.9506 440299.2346 500294.1782 479518.4477 520517.5384 488153.1451 531674.9855 519827.0868 559277.7035 0.939198997 0.866208232 0.787264058 0.894536247 0.857388815 0.93069603 0.872827831 0.950645774 0.929461489 1 19.09320529 -7.627915451 0.599024624 0.998201769 0.864748241 0.485918248 0.040728387 0.634243632 0.527584804 0.040935532 0.020174636 2.36E-08 7.627915451 -0.133453528 VHAPGLNLS(ph)GVGGK ddPTM_HeLa_A486_30min_R1 2 VHAPGLNLSGVGGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VHAPGLNLS(1)GVGGK;VHAPGLNLS(1)GVGGK ; 150.61 4.02E-08 1187090000 1249130 1258780 781500 543940 1181050 1128950 1392630 1360700 835820 1334290 TRUE FALSE FALSE 1161572.438 1159029.688 1084117.729 1266319.809 1032911.696 989671.6273 1044179.244 1050898.314 908269.5506 1000175.099 1.161369083 1.158826779 1.083927934 1.266098116 1.032730866 0.989498367 1.043996441 1.050714335 0.908110541 1 19.93182116 -5.915859395 8.018076972 1.005213455 1.160609363 0.680619137 0.055056892 0.151567626 12.64182493 0.016627647 0.018878937 1.21E-06 5.915859395 0.155395908 VHASRPAS(ph)LDSGR ddPTM_HeLa_A485_30min_R1 2 VHASRPASLDSGR 13 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;H0Y470;H0Y7U8;A0A2R8Y802 Q3V6T2 CCDC88A Girdin 1 0 VHAS(0.001)RPAS(0.999)LDSGR;VHAS(0.018)RPAS(0.964)LDS(0.018)GR ; 101.78 0.00032197 316180000 123190 301550 364010 77992 362870 216170 214300 256310 282510 134893 TRUE FALSE FALSE 150593.1905 336813.6494 498672.4467 82252.50547 326741.3887 227488.3269 168513.0543 193449.5706 339207.1657 101266.6576 1.487095497 3.326007368 4.924349815 0.812236795 3.226544614 2.246428709 1.664052693 1.910298761 3.349643146 1 16.62779971 -5.273166742 24.97793707 2.111455883 3.25383667 0.20477218 1.089765383 1202.076854 2560283.111 0.302419637 0.45275142 5.33E-06 5.273166742 1.142380787 VHASRPAS(ph)LDSGR ddPTM_HeLa_A486_30min_R1 1 VHASRPASLDSGR 13 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y885;A0A2R8YDS8;A0A2R8YCU9;A0A2R8Y5D7;H7C2C6;H0Y470;H0Y7U8;A0A2R8Y802 Q3V6T2 CCDC88A Girdin 1 0 VHAS(0.001)RPAS(0.997)LDS(0.002)GR 97.081 0.00050794 109770000 106710 144170 172530 16727 173250 81295 94599 106470 142370 65900 TRUE FALSE FALSE 99230.18005 132745.4441 239338.2365 38941.30134 151519.3695 71265.64945 70929.32963 82229.10522 154710.7462 49398.21106 2.008780843 2.687252054 4.845079029 0.788314 3.067304792 1.442676727 1.435868387 1.664617067 3.131909899 1 15.59217118 -5.28110125 24.99923233 1.841772567 3.131059234 0.292936719 0.986635681 1056.070743 1342746.573 0.272992424 0.405548981 5.23E-06 5.28110125 1.289286667 VHAYFAPVT(ph)PPPSVGGSR ddPTM_HeLa_A485_30min_R1 4 VHAYFAPVTPPPSVGGSR 18 0 J3KTA1;Q96IG2-2;Q96IG2 J3KTA1 FBXL20 F-box/LRR-repeat protein 20 1 0 VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(1)PPPSVGGSR ;;; 115.42 8.84E-05 880250000 307998 401729 348078 338361 361980 379770 461468 524825 336129 549910 TRUE FALSE FALSE 376511.0925 448707.712 476846.5369 356844.8047 325940.0002 399654.17 362871.592 396110.8459 403587.0071 412827.5573 0.91202994 1.086913177 1.155074385 0.864391919 0.789530627 0.968089855 0.87899072 0.959506794 0.97761644 1 18.65517975 -5.274695311 24.97507033 0.912937376 1.054896574 0.34896569 0.0819656 789.1887935 1486883.335 0.023649702 0.035316623 5.31E-06 5.274695311 0.141959198 VHAYFAPVT(ph)PPPSVGGSR ddPTM_HeLa_A486_30min_R1 2 VHAYFAPVTPPPSVGGSR 18 0 J3KTA1;Q96IG2-2;Q96IG2 J3KTA1 FBXL20 F-box/LRR-repeat protein 20 1 0 VHAYFAPVT(1)PPPSVGGSR;VHAYFAPVT(0.999)PPPS(0.001)VGGSR ; 97.49 0.00056741 346831000 180613 186306 169614 67898 212985 149243 172900 163969 188188 229385 TRUE FALSE FALSE 167952.9614 171542.434 235293.0832 158069.9754 186270.4353 130830.9161 129638.5913 126636.8381 204500.2874 171945.503 0.976780192 0.997655833 1.368416616 0.91930276 1.083310887 0.760885942 0.753951624 0.73649404 1.189331991 1 17.39159186 -6.244363155 24.03306508 0.863277281 1.073431921 0.213726398 0.170137533 700.6290266 986064.3479 0.056320347 0.056162881 5.70E-07 6.244363155 0.21015464 VHAYIISYLKK ddPTM_HeLa_A485_30min_R1 1 VHAYIISYLKK 11 1 Q9NZN4-2;Q9NZN4;Q9H223 Q9NZN4-2;Q9H223 EHD2;EHD4 EH domain-containing protein 2;EH domain-containing protein 4 0 0 81.865 0.0095885 13591000 16476 19910 14209 15431 21864 21246 27115 29990 12944 21116 FALSE FALSE TRUE 20141.02936 22238.30131 19465.50039 16273.95646 19687.14339 22358.40771 21321.65874 22634.90548 15541.74207 15852.16981 1.27055347 1.402855355 1.227939179 1.026607502 1.241921051 1.410432009 1.345030932 1.427874275 0.980417334 1 13.95239271 -7.777206448 24.99505722 0.990208282 1.290480906 0.540917612 0.111962727 232.211643 368107.3951 0.117305465 0.030698958 1.67E-08 7.777206448 0.300272624 VHCCFYFISPFGHGLKPLDVAFMK ddPTM_HeLa_A485_30min_R1 2 VHCCFYFISPFGHGLKPLDVAFMK 24 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0;H7C310;C9JB25;C9J2Q4 B5MCX3 2-Sep Septin-2 0 0 ; ; 127.5 1.46E-11 30286000 21299.8 14281.1 14624.7 12850 18936.2 21267.2 35683 35215 7877.2 24698.7 FALSE FALSE TRUE 26037.86703 15951.15042 20034.98511 13551.96296 17050.84544 22380.71771 28059.03555 26578.46604 9458.081786 18541.76864 1.404281735 0.860282033 1.080532581 0.730888365 0.919591101 1.207043306 1.513287977 1.433437476 0.510095988 1 14.17849124 -6.268352458 23.84827878 1.183644993 0.981023914 0.031369068 0.304790349 769.778619 2655520.08 0.106707427 0.096276336 5.39E-07 6.268352458 -0.202621079 VHCCFYFISPFGHGLKPLDVAFMK ddPTM_HeLa_A486_30min_R1 1 VHCCFYFISPFGHGLKPLDVAFMK 24 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0;H7C310;C9JB25;C9J2Q4 B5MCX3 2-Sep Septin-2 0 0 166.34 3.19E-21 5822900 5314.8 12992 11597 4277.9 19803 16594 20881 15312 16818 11930 FALSE FALSE TRUE 4942.259966 11962.4666 16087.66898 9959.167393 17319.12308 14546.801 15656.35294 11825.79186 18275.79778 8942.650349 0.552661658 1.337686943 1.79898222 1.113670669 1.93668794 1.626676704 1.750750877 1.322403471 2.043666818 1 13.12648675 -4.303355056 2.982445034 1.590782955 0.429776465 0.470674002 0.323939452 0.267402157 3.657133987 0.076420749 0.702159421 4.97E-05 4.303355056 -1.16100649 VHCCLYFIPATGHSLRPLDIEFMK ddPTM_HeLa_A485_30min_R1 1 VHCCLYFIPATGHSLRPLDIEFMK 24 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;Q9UHD8-3;K7EK18;K7EL40;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 Q9UHD8-7 9-Sep Septin-9 0 0 56.529 0.016243 6424800 5081.4 4844.8 4978.6 5237.6 7019.8 4596 6474.1 6441.5 3971.7 8652.6 FALSE FALSE TRUE 6211.739899 5411.357216 6820.391317 5523.716826 6320.884064 4836.639453 5090.855646 4861.712025 4768.783759 6495.666059 0.956289908 0.833071954 1.049991064 0.850369581 0.973092521 0.744594844 0.783731122 0.748454736 0.734148541 1 12.66526175 -6.26225766 24.99927466 0.785310847 0.928993206 0.326890652 0.091891558 78.08788299 2385636.215 0.029302816 0.027372008 5.47E-07 6.26225766 0.14368236 VHDRS(ph)EEEEEEEEEEEEEQPR ddPTM_HeLa_A485_30min_R1 5 VHDRSEEEEEEEEEEEEEQPR 21 1 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR ;;;; 400.3 7.20E-160 25192520000 906492 1108814 923980 1047165 1479942 1058774 1304287 1511621 1112799 1368586 TRUE FALSE FALSE 1108138.018 1238480.152 1265798.652 1104368.972 1332593.778 1114209.769 1025615.427 1140893.58 1336127.552 1027422.697 1.078560967 1.20542417 1.232013518 1.07489252 1.297025832 1.084470659 0.998240968 1.110442258 1.300465286 1 19.97059842 VHDRS(ph)EEEEEEEEEEEEEQPR ddPTM_HeLa_A486_30min_R1 4 VHDRSEEEEEEEEEEEEEQPR 21 1 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR ;;; 373.5 1.46E-142 25982780000 997780 1123367 866271 386139 1298150 1133380 1253700 1290060 1014770 1266830 TRUE FALSE FALSE 927840.7745 1034347.308 1201714.331 898951.1064 1135323.922 993555.099 940010.9997 996341.4998 1102731.081 949607.5223 0.977078164 1.089236641 1.265485269 0.946655418 1.195571745 1.046279727 0.989894222 1.049213993 1.161249311 1 19.85697184 VHDRS(ph)EEEEEEEEEEEEEQPRR ddPTM_HeLa_A485_30min_R1 2 VHDRSEEEEEEEEEEEEEQPRR 22 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 VHDRS(1)EEEEEEEEEEEEEQPRR;VHDRS(1)EEEEEEEEEEEEEQPRR ; 439.45 9.49E-216 2104600000 159888 215050 225160 208580 289740 207330 326220 302560 203227 257250 TRUE FALSE FALSE 195454.534 240198.2268 308456.0537 219974.1972 260892.4683 218185.4782 256520.432 228356.6856 244012.7948 193122.3093 1.012076412 1.243762192 1.597205702 1.139040839 1.350918333 1.129778734 1.328279643 1.182445914 1.263514276 1 17.55915531 -9.814445768 0.479823159 0.928392513 1.266568651 0.196192416 0.150322332 23.08875707 3.837005702 2.605523722 0.076870409 1.53E-10 9.814445768 0.338176138 VHDRS(ph)EEEEEEEEEEEEEQPRR ddPTM_HeLa_A486_30min_R1 1 VHDRSEEEEEEEEEEEEEQPRR 22 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 VHDRS(1)EEEEEEEEEEEEEQPRR 392.85 1.18E-158 1232800000 156830 173510 154190 70724 206670 140300 185270 183930 117500 172800 TRUE FALSE FALSE 145837.0269 159760.4357 213896.4974 164649.0462 180747.5215 122991.2125 138913.4864 142053.1542 127684.9946 129529.7553 1.12589595 1.233387922 1.651330977 1.271129138 1.395413132 0.949520921 1.072444599 1.096683568 0.985758016 1 16.98292402 -6.258222206 24.99785533 1.030146838 1.343739975 0.581057246 0.133335767 219.4716954 1705327.547 0.046535358 0.044666573 5.52E-07 6.258222206 0.313593137 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(ph)SPR ddPTM_HeLa_A485_30min_R1 1 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.873)S(0.127)PR 211.67 6.43E-31 2029500000 422560 581700 444920 504430 643220 573950 688400 783990 489200 693240 TRUE FALSE FALSE 516557.0142 649724.7549 609514.4227 531985.7336 579178.7583 604001.1345 541317.7163 591715.2233 587377.9528 520428.0261 0.992561869 1.248443055 1.171179091 1.02220808 1.112889255 1.160585334 1.040139441 1.136978013 1.128643969 1 18.98933913 -10.76927826 2.62720442 0.971352914 1.115685489 0.17627179 0.072769415 17125448.82 11797924 3146534.318 0.01753487 1.70E-11 10.76927826 0.144332575 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(ph)SPR ddPTM_HeLa_A486_30min_R1 4 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VHEPPREDAAPTKPAPPAPPPPQNLQPES(0.002)DAPQQPGS(0.499)S(0.499)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.5)S(0.5)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.657)S(0.343)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPES(0.048)DAPQQPGS(0.522)S(0.43)PR ;;; 213.09 4.00E-31 6028000000 583015 610502 417280 230007 686339 599218 730665 683550 526808 718510 TRUE FALSE FALSE 542148.6592 562123.5981 578861.9911 535467.9199 600251.9628 525292.5756 547844.8888 527920.5868 572472.1416 538590.4193 1.006606579 1.043694017 1.074772165 0.99420246 1.114486893 0.975309914 1.017182759 0.980189338 1.062908142 1 19.03882904 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSS(ph)PR ddPTM_HeLa_A485_30min_R1 4 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.071)S(0.929)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.141)S(0.859)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.199)S(0.801)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.044)S(0.956)PR ;;; 217.94 2.36E-40 8669400000 1269740 1505330 1258010 1440920 1920060 1761900 2205580 2348180 1444690 1932590 TRUE FALSE FALSE 1552189.282 1681365.249 1723400.249 1519633.811 1728892.085 1854150.36 1734339.815 1772285.173 1734626.032 1450830.88 1.069862314 1.158898168 1.187871221 1.047423123 1.191656525 1.27799207 1.195411429 1.221565655 1.195608707 1 20.46844793 -4.262701661 3.201707044 1.17465705 1.054731784 0.105801065 0.078049212 0.707458825 11.47325489 0.01978679 0.211809454 5.46E-05 4.262701661 -0.119925266 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSS(ph)PR ddPTM_HeLa_A486_30min_R1 4 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;C9JQE8 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.179)S(0.821)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.137)S(0.863)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.145)S(0.855)PR;VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(0.031)S(0.969)PR ;;; 193.22 1.15E-22 13752600000 1901260 2095040 1620152 788167 2605620 2231570 2439780 2446850 1914020 2544840 TRUE FALSE FALSE 1767991.492 1929021.4 2247518.244 1834892.608 2278798.843 1956261.582 1829321.239 1889755.669 2079928.795 1907595.5 0.926816766 1.011231889 1.178194352 0.961887679 1.194592272 1.025511741 0.958967055 0.990648001 1.090340586 1 20.86332385 -9.229176831 11.9780408 0.999999667 1.039282471 0.016441487 0.086287549 0 0 0.082940518 0.02011603 5.90E-10 9.229176831 0.039282804 VHGEPT(ph)SDLS(ph)DID ddPTM_HeLa_A485_30min_R1 2 VHGEPTSDLSDID 13 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 2 0 VHGEPT(0.5)S(0.5)DLS(1)DID;VHGEPT(0.5)S(0.5)DLS(1)DID ; 123.95 8.60E-05 1832770000 1020450 1205300 1104990 1074230 1342120 1284060 1475780 1656490 1049710 1449760 TRUE FALSE FALSE 1247445.582 1346249.35 1513771.783 1132912.465 1208493.82 1351291.396 1160467.547 1250233.23 1260377.168 1088361.513 1.146168408 1.23695053 1.390872211 1.040933965 1.110379048 1.241583224 1.066251915 1.148729733 1.158050109 1 20.05372641 -13.99999997 0.061159896 0.350389676 1.440333427 0.28233063 0.09158198 516.780982 2.300244898 49.58678019 7.9742781 1.00E-14 13.99999997 1.089943751 VHGEPT(ph)SDLS(ph)DID ddPTM_HeLa_A486_30min_R1 1 VHGEPTSDLSDID 13 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 2 0 VHGEPT(0.5)S(0.5)DLS(1)DID 146.07 2.27E-07 1219700000 652060 661080 478300 251490 720930 628370 731720 735920 566020 785730 TRUE FALSE FALSE 606353.9612 608693.6132 663510.5693 585481.4296 630504.237 550848.0982 548635.9167 568367.081 615083.0693 588978.0938 1.029501721 1.033474113 1.126545412 0.994063168 1.070505412 0.935260758 0.931504792 0.965005468 1.04432249 1 19.16785445 -6.254691243 24.96553898 0.970299423 1.050908456 0.42431706 0.043841624 514.269791 1902604.288 0.014799237 0.01446283 5.56E-07 6.254691243 0.080609033 VHGEPTS(ph)DLS(ph)DID ddPTM_HeLa_A486_30min_R1 1 VHGEPTSDLSDID 13 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 2 0 VHGEPT(0.309)S(0.691)DLS(1)DID 124.38 6.73E-05 1020200000 92495 115620 94203 28384 134570 120960 119590 130560 100630 104060 TRUE FALSE FALSE 86011.57814 106457.8501 130680.9244 66079.38645 117690.9758 106037.185 89667.31711 100834.3381 109352.6894 78002.69868 1.102674389 1.364797012 1.675338503 0.847142311 1.508806461 1.359404057 1.149541216 1.292703199 1.401909053 1 16.25123642 -10.46427393 2.878704606 0.991313633 1.303078865 0.147277656 0.216649881 26611759.34 29253291.86 1847536.13 0.052773631 3.43E-11 10.46427393 0.311765232 VHGLPTT(ph)SPSGMNMAELAQQVVK ddPTM_HeLa_A485_30min_R1 1 VHGLPTTSPSGMNMAELAQQVVK 23 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 VHGLPT(0.014)T(0.49)S(0.49)PS(0.007)GMNMAELAQQVVK 282.91 5.29E-75 548580000 278050 270580 200520 263810 349470 306570 386000 431940 248610 364660 TRUE FALSE FALSE 339901.2632 302221.9773 274700.6923 278221.2723 314675.5397 322621.5312 303527.9467 326006.0377 298503.7466 273756.9731 1.241616823 1.103979102 1.003447288 1.016307527 1.149470409 1.178496122 1.108749645 1.190859302 1.09039687 1 18.06253619 -4.26394693 6.73082479 1.098969957 1.243980229 0.310669689 0.065762026 0.150167459 46.75029985 0.017521041 0.10061547 5.45E-05 4.26394693 0.145010273 VHGLPTT(ph)SPSGMNMAELAQQVVK ddPTM_HeLa_A486_30min_R1 2 VHGLPTTSPSGMNMAELAQQVVK 23 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 VHGLPT(0.009)T(0.495)S(0.495)PS(0.002)GMNMAELAQQVVK;VHGLPT(0.153)T(0.416)S(0.416)PS(0.014)GMNMAELAQQVVK ; 261.78 3.70E-61 1794690000 632910 656230 446530 215573 692770 667350 739420 793720 480390 725050 TRUE FALSE FALSE 588546.2774 604227.9449 619438.3745 501864.8385 605876.3268 585019.1421 554409.2952 613007.2828 522030.592 543492.7607 1.082896259 1.111749757 1.139736201 0.923406667 1.114782699 1.076406503 1.020085888 1.127903308 0.960510663 1 19.05190129 -1 0.076625038 0.938902026 1.364758214 0.155032633 0.065651632 433.2065876 2.436133694 2.146079122 19.63464435 0.1 1 0.425856188 VHGLPTTS(ph)PSGMNMAELAQQVVK ddPTM_HeLa_A485_30min_R1 1 VHGLPTTSPSGMNMAELAQQVVK 23 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 VHGLPT(0.029)T(0.151)S(0.605)PS(0.215)GMNMAELAQQVVK 261.23 2.26E-61 1062100000 400610 376970 259410 418510 458840 400020 664410 669640 376200 556690 TRUE FALSE FALSE 489724.3124 421053.3623 355376.554 441372.1416 413156.2785 420964.4287 522453.3758 505409.74 451699.8893 417917.4281 1.171820746 1.007503717 0.850351122 1.056122841 0.988607439 1.007290915 1.250135411 1.209353107 1.080835253 1 18.6728584 -6.73205337 24.14470985 1.152526996 1.006712402 0.261725123 0.097795994 164.09085 134823.1308 0.037448656 0.029002091 1.85E-07 6.73205337 -0.145814594 VHGPGIQSGTTNKPNK ddPTM_HeLa_A485_30min_R1 1 VHGPGIQSGTTNKPNK 16 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 129.38 8.60E-06 6846400 12699 9552.9 11746 13232 18957 10561 15012 9827.9 14476 23919 FALSE FALSE TRUE 15523.84874 10670.02856 16091.33419 13954.83065 17069.57452 11113.95763 11804.56356 7417.592115 17381.20042 17956.4335 0.864528512 0.594217585 0.896131974 0.777149352 0.950610516 0.618940149 0.657400233 0.413088274 0.967965071 1 14.13221321 -3.165224414 15.20162803 0.753545361 0.737150258 0 0.186390596 0 0 0.041454743 0 0.000683558 3.165224414 -0.016395103 VHGPGIQSGTTNKPNK(ac)FTVETR ddPTM_HeLa_A485_30min_R1 2 VHGPGIQSGTTNKPNKFTVETR 22 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 1 ; VHGPGIQSGTTNK(0.001)PNK(0.999)FTVETR;VHGPGIQSGTTNKPNK(1)FTVETR 275.2 4.05E-64 58505000 27982 40529 65687 30537 52126 36349 61199 58648 36085 59091 FALSE TRUE FALSE 34206.49936 45268.51399 89987.35476 32205.15899 46936.15241 38252.17743 48123.3337 44264.48604 43326.92851 44360.70119 0.771099159 1.020464348 2.0285377 0.725983993 1.058057045 0.862298756 1.08481905 0.997831072 0.976696205 1 15.43699455 VHGPGIQSGTTNKPNK(ac)FTVETR ddPTM_HeLa_A486_30min_R1 1 VHGPGIQSGTTNKPNKFTVETR 22 2 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 1 VHGPGIQSGTTNK(0.003)PNK(0.997)FTVETR 233.68 9.87E-43 24978000 6358.1 7028 12090 796.62 8778.8 5847.7 10473 8277.7 6451.1 8041.3 FALSE TRUE FALSE 5912.430023 6471.075684 16771.57178 1854.571619 7677.681045 5126.270229 7852.544628 6393.048411 7010.286542 6027.70614 0.980875624 1.073555269 2.78241364 0.307674524 1.273731809 0.850451251 1.30274178 1.060610498 1.163010668 1 12.55739337 -5.324870299 24.99998842 1.015092371 1.558469869 0.222218716 0.52613373 349.7625438 137850.7281 0.145949335 0.216477886 4.73E-06 5.324870299 0.543377498 VHGS(ph)PLELK ddPTM_HeLa_A485_30min_R1 4 VHGSPLELK 9 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VHGS(1)PLELK;VHGS(1)PLELK;VHGS(1)PLELK;VHGS(1)PLELK ;;; 146.16 6.94E-05 975330000 1738690 1212510 1016360 2599810 1849550 1343960 1913910 1556690 1368210 3198980 TRUE FALSE FALSE 2125455.592 1354302.497 1392353.858 2741831.037 1665402.308 1414327.667 1504987.493 1174909.337 1642797.197 2401533.159 0.885041118 0.563932458 0.57977707 1.141700262 0.693474625 0.588926979 0.62667779 0.489233027 0.684061842 1 21.1955243 -5.990679035 24.9949531 0.642500577 0.780639768 0.057869971 0.196141993 512.7840529 1375063.788 0.06098983 0.069069625 1.02E-06 5.990679035 0.138139191 VHGS(ph)PLELK ddPTM_HeLa_A486_30min_R1 5 VHGSPLELK 9 0 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5;D6RD46 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VHGS(1)PLELK;VHGS(1)PLELK;VHGS(1)PLELK;VHGS(1)PLELK;VHGS(1)PLELK ;;;; 138.99 0.00010887 1392346000 1940960 1962480 945536 830279 1602980 2253820 2400970 2282260 1535040 2638350 TRUE FALSE FALSE 1804908.727 1806965.938 1311672.862 1932931.472 1401919.301 1975766.604 1800221.911 1762639.219 1668098.503 1977689.987 0.912634811 0.913675019 0.663234819 0.977368285 0.708867067 0.999027459 0.910264967 0.891261639 0.843458031 1 20.91538486 -6.286253461 24.95055934 0.920847665 0.837867633 0.181482482 0.098635065 1509.940902 1518239.863 0.033517649 0.029571853 5.17E-07 6.286253461 -0.082980033 VHIEIGPDGR ddPTM_HeLa_A485_30min_R1 6 VHIEIGPDGR 10 0 P55795;G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;P52597 P55795;G8JLB6;P52597 HNRNPH2;HNRNPH1;HNRNPF "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 0 ;;;;; ;;;;; 175.41 2.31E-09 1283920000 864110 1103460 1239270 952816 1382910 1094020 1294120 1273770 1087790 1306510 FALSE FALSE TRUE 1056328.288 1232500.048 1697727.543 1004865.925 1245222.625 1151301.196 1017620.69 961375.9103 1306099.475 980821.1015 1.076983648 1.256600257 1.730924774 1.024514994 1.26957161 1.173813648 1.037519165 0.980174579 1.331638841 1 19.90363049 -5.922429428 1.394866124 1.096908871 1.319700984 0.160531875 0.198038615 0.742834026 3.001366238 0.081457358 0.098017587 1.20E-06 5.922429428 0.222792113 VHIEIGPDGR ddPTM_HeLa_A486_30min_R1 6 VHIEIGPDGR 10 0 P55795;G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;P52597 P55795;G8JLB6;P52597 HNRNPH2;HNRNPH1;HNRNPF "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 0 ;;;;; ;;;;; 156.26 6.30E-06 1047570000 1134320 1336900 1128350 408591 1697270 1174910 1321780 1367620 1119790 1327000 FALSE FALSE TRUE 1054810.026 1230959.175 1565277.338 951220.497 1484382.57 1029961.55 991056.6636 1056242.781 1216854.299 994710.5627 1.060419046 1.23750488 1.573600801 0.956278673 1.49227587 1.035438437 0.996326671 1.06185942 1.223325 1 19.92391727 -6.365984134 20.03331064 1.063051738 1.26292234 0.239378013 0.178800242 10.50689983 2002.982365 0.060964844 0.053765761 4.31E-07 6.365984134 0.199870602 VHIGQVIMSIR ddPTM_HeLa_A485_30min_R1 4 VHIGQVIMSIR 11 0 X1WI28;P27635;F8W7C6;A0A087WV22;Q96L21;H7C123;H7C2C5 X1WI28 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 0 ;;; ;;; 136.96 0.00025886 257320000 232202 322563 313276 253229 389268 287151 358681 399568 233645 342514 FALSE FALSE TRUE 283854.5338 360283.9369 429169.8289 267062.2591 350511.1111 302185.7823 282045.8742 301573.3215 280535.4084 257131.5633 1.103927228 1.401165739 1.669067085 1.038621069 1.363158636 1.175218547 1.096893242 1.172836651 1.091018951 1 17.97214719 -6.364649924 0.83065206 1.074002376 1.357327531 0.294994976 0.164748896 0.814136508 1.198969825 0.114164317 0.097166695 4.32E-07 6.364649924 0.283325154 VHIGQVIMSIR ddPTM_HeLa_A486_30min_R1 5 VHIGQVIMSIR 11 0 X1WI28;P27635;F8W7C6;A0A087WV22;Q96L21;H7C123;H7C2C5 X1WI28 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like 0 0 ;;;; ;;;; 142.07 0.00023687 267714600 347408 326696.2 307878.5 118242.9 397939.8 302912.9 367997.2 361941.7 296075 366573.5 FALSE FALSE TRUE 323056.4932 300807.6033 427097.3005 275275.4469 348026.4796 265542.5862 275920.4083 279535.476 321739.0194 274781.1096 1.17568669 1.094717187 1.554318276 1.001799022 1.266558972 0.966378608 1.004146205 1.017302377 1.17089206 1 18.0679233 -6.25836459 24.95875766 1.031100394 1.218337499 0.298858127 0.143112948 350.7905545 2847452.625 0.047388768 0.045442106 5.52E-07 6.25836459 0.187237105 VHIPNDDAQFDAS(ph)HCDSDKGEFGGFGSVTGK ddPTM_HeLa_A486_30min_R1 2 VHIPNDDAQFDASHCDSDKGEFGGFGSVTGK 31 1 Q16576;Q16576-2;Q5JP01 Q16576 RBBP7 Histone-binding protein RBBP7 1 0 VHIPNDDAQFDAS(0.549)HCDS(0.451)DKGEFGGFGS(0.001)VTGK;VHIPNDDAQFDAS(0.904)HCDS(0.096)DKGEFGGFGSVTGK ; 200.04 3.37E-29 504570000 290640 363560 189221 210717 384060 449760 567320 543860 281115 518780 TRUE FALSE FALSE 270267.6369 334750.1815 262492.4387 490559.825 335887.6136 394273.184 425370.5355 420034.9504 305482.2745 388874.1113 0.695000333 0.860818892 0.675006207 1.261487486 0.863743828 1.013883857 1.093851514 1.080130917 0.7855557 1 18.56894367 -5.234909925 24.99978208 1.014482118 0.755329496 0.476738501 0.129684178 660.2628341 622191.7322 0.033665637 0.058289652 5.82E-06 5.234909925 -0.259152622 NTVDLVTTCHIHSS(ph)SDDEIDFK ddPTM_HeLa_A485_30min_R1 1 NTVDLVTTCHIHSSSDDEIDFK 22 0 E9PQP7;Q5H9R7-2;Q5H9R7;Q5H9R7-5;H0YDW1 E9PQP7 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 NTVDLVTTCHIHS(0.031)S(0.546)S(0.423)DDEIDFK 82.089 0.0023715 158330000 88701 62882 49768 35718 75320 55123 67855 46306 40206 67669 TRUE FALSE FALSE 108432.2314 70235.5029 68179.25422 37669.1839 67820.87634 58009.15504 53357.22493 34949.3809 48274.97541 50800.36366 2.134477465 1.382578742 1.342101696 0.74151406 1.335047064 1.141904326 1.050331554 0.687975014 0.950287989 1 15.6325512 -1 0.676116306 0.970023304 124.9768252 0.77342597 0.186798661 119.3891805 0.696103687 0.077869925 22281.57521 0.1 1 124.0068019 VHISGS(ph)VDGLDK ddPTM_HeLa_A486_30min_R1 1 VHISGSVDGLDK 12 0 J3KP75 J3KP75 PHACTR2 Phosphatase and actin regulator 1 0 VHISGS(1)VDGLDK 194.55 8.71E-14 261070000 370360 371320 258200 52499 398160 320490 331950 338440 326760 192300 TRUE FALSE FALSE 344399.6765 341895.2509 358181.9548 122220.3252 348219.0601 280951.2023 248892.599 261384.6001 355083.8199 144146.8283 2.389228265 2.371854135 2.48484104 0.847887717 2.415724745 1.949062671 1.726660252 1.813321896 2.463348129 1 17.13717957 -10.99449 2.892644309 0.00811406 2.029268792 0.298043451 0.482965213 62814387.57 57893493.29 415751757.6 0.121875304 1.01E-11 10.99449 2.021154732 VHLLCLLANGFYR ddPTM_HeLa_A485_30min_R1 1 VHLLCLLANGFYR 13 0 Q01831-2;Q01831 Q01831-2 XPC DNA repair protein complementing XP-C cells 0 0 127.83 0.00013322 5164500 9979.5 15020 15410 10564 25519 10500 16219 17682 11854 31578 FALSE FALSE TRUE 12199.40535 16776.45834 21110.80026 11141.08457 22978.23876 11049.76376 12753.67815 13345.46178 14232.98907 23706.18575 0.514608528 0.707682734 0.890518639 0.469965295 0.969292952 0.466113101 0.537989463 0.562952721 0.600391359 1 14.53297594 -9.93723335 4.269275571 1.000009958 0.640089979 0.30773098 0.163879377 107198899.8 239043990.9 17106.91756 0.040186932 1.16E-10 9.93723335 -0.359919979 VHLVGIDIFTGK ddPTM_HeLa_A485_30min_R1 4 VHLVGIDIFTGK 12 0 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 ;;; ;;; 188.06 4.92E-10 1635640000 3081680 3514550 2796000 3316790 4208970 3883080 4757030 5426260 3041670 4511390 FALSE FALSE TRUE 3767189.084 3925546.05 3830356.751 3497977.839 3789910.168 4086392.064 3740651.679 4095461.227 3652105.269 3386783.499 1.112320609 1.159077943 1.130971836 1.032831842 1.119029359 1.206570206 1.104485031 1.209248016 1.07834034 1 21.69148433 -8.006224676 24.7878527 0.999999993 1.133254977 0.428749957 0.048347942 196.1810812 781233.6468 0.047419494 0.012243661 9.86E-09 8.006224676 0.133254984 VHLVGIDIFTGK ddPTM_HeLa_A486_30min_R1 4 VHLVGIDIFTGK 12 0 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 ;;; ;;; 188.96 1.38E-12 1731000000 4685560 4340340 3164640 1922770 6676100 4502270 5319170 5157920 3852130 5237550 FALSE FALSE TRUE 4357126.44 3996395.651 4390073.36 4476305.731 5838721.286 3946825.703 3988257.406 3983574.213 4186035.73 3926033.389 1.109803715 1.017921972 1.118195625 1.140159873 1.487180751 1.00529601 1.01584908 1.014656224 1.066225199 1 21.90464101 VHLVGIDIFTGKK ddPTM_HeLa_A485_30min_R1 1 VHLVGIDIFTGKK 13 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 215.85 1.42E-21 38701000 163720 191760 117400 171420 177810 212720 286740 366110 126570 238150 FALSE FALSE TRUE 200138.9492 214184.6639 160831.1454 180784.2405 160106.6121 223857.6903 225475.6565 276320.9485 151971.438 178783.5878 1.119448108 1.198010771 0.899585624 1.01119036 0.895533052 1.252115437 1.261165296 1.545561043 0.850030139 1 17.44785478 -6.281571075 24.52934372 1.220833898 1.026671688 0.128595518 0.191276857 1084.984632 1321988.202 0.066147403 0.058416172 5.23E-07 6.281571075 -0.19416221 VHLVGIDIFTGKK ddPTM_HeLa_A486_30min_R1 2 VHLVGIDIFTGKK 13 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 ; ; 215.85 1.42E-21 85430000 270646 178167 110318 93429 188997 215436 262277 243030 175211 341780 FALSE FALSE TRUE 251675.113 164048.398 153036.084 217507.4336 165291.2339 188857.6967 196652.5205 187697.3743 190398.4306 256196.0634 0.982353553 0.640323649 0.597339717 0.848988196 0.645174761 0.737160807 0.767586035 0.732631766 0.743174692 1 17.96688878 -10.00485937 0.757676498 1.04663584 0.73530275 0.344723869 0.105432777 57.20942197 16.26923103 6.390397495 0.035271331 9.89E-11 10.00485937 -0.31133309 VHNNS(ph)PDTSRR ddPTM_HeLa_A485_30min_R1 6 VHNNSPDTSRR 11 1 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 0 VHNNS(1)PDTSRR;VHNNS(1)PDTSRR;VHNNS(1)PDTSRR;VHNNS(1)PDTSRR;VHNNS(0.985)PDT(0.008)S(0.008)RR;VHNNS(0.992)PDT(0.004)S(0.004)RR ;;;;; 143.05 6.27E-07 1656505000 510757.9 699450.3 383290.2 609644.7 379448.9 550448.1 521085.8 774721.3 586198 714012.3 TRUE FALSE FALSE 624374.2328 781244.9282 525085.195 642948.0463 341669.6352 579268.7114 409751.562 584719.6865 703842.5617 536022.174 1.164829112 1.457486212 0.979596033 1.199480315 0.63741698 1.080680501 0.764430245 1.09084981 1.313084786 1 19.03193316 -4.776442434 24.99532244 0.99890973 1.311157651 0.276263476 0.195685965 254.5396681 424068.1655 0.050740741 0.106289584 1.67E-05 4.776442434 0.312247921 VHNNS(ph)PDTSRR ddPTM_HeLa_A486_30min_R1 5 VHNNSPDTSRR 11 1 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 1 0 VHNNS(1)PDTSRR;VHNNS(0.998)PDT(0.001)S(0.001)RR;VHNNS(1)PDTSRR;VHNNS(0.995)PDT(0.005)SRR;VHNNS(1)PDTSRR ;;;; 119.73 0.0001129 674381000 378953 153627.9 389454.5 140296.1 208135 532148 258768.2 241466.6 488148 376929 TRUE FALSE FALSE 352390.3516 141453.8657 540261.7124 326616.411 182028.7675 466496.9902 194021.6594 186489.9264 530461.0617 282543.525 1.247207317 0.500644514 1.912136236 1.155986183 0.644250359 1.651062399 0.686696534 0.660039639 1.877449011 1 18.1081136 -5.531815684 24.98301621 1.061660452 1.212394315 0.012787696 0.499026505 1128.402162 3154406.197 0.145022861 0.187483466 2.94E-06 5.531815684 0.150733863 VHPAVVIR ddPTM_HeLa_A485_30min_R1 1 VHPAVVIR 8 0 C9JD32;J3KT29;P62829;J3QQT9;J3KTJ3 C9JD32 RPL23 60S ribosomal protein L23 0 0 69.998 0.033941 18727000 9953.8 12131 11596 12381 17341 13331 17632 20731 15129 19280 FALSE FALSE TRUE 12167.98847 13549.61492 15885.84295 13057.34268 15614.46915 14028.99055 13864.77916 15646.68975 18165.25153 14473.85082 0.840687708 0.936144437 1.097554697 0.902133291 1.07880545 0.969264553 0.95791917 1.081031575 1.255039295 1 13.82116119 -7.411783877 4.319891659 1.138886124 0.974782274 0.340249773 0.091781942 0.241701636 7.397611262 0.05338085 0.023604472 3.87E-08 7.411783877 -0.16410385 VHPVSTMIK ddPTM_HeLa_A485_30min_R1 1 VHPVSTMIK 9 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 95.358 0.007945 51628000 83853 90917 80516 90305 117590 92838 123000 122620 93668 135890 FALSE FALSE TRUE 102505.8106 101548.9523 110302.219 95238.13349 105882.3267 97698.85413 96720.04518 92547.25274 112466.3084 102015.1239 1.004809941 0.995430368 1.081233985 0.933568768 1.037908133 0.957689903 0.94809516 0.907191495 1.102447403 1 16.63842352 -5.270390341 24.9796651 0.979649473 1.023985327 0.105226813 0.056744627 1368.045404 3817841.413 0.015505873 0.023452793 5.37E-06 5.270390341 0.044335854 VHQKMT(ph)YS(ph)SKVSAK ddPTM_HeLa_A486_30min_R1 1 VHQKMTYSSKVSAK 14 2 Q494V2;Q494V2-2 Q494V2 CCDC37 Coiled-coil domain-containing protein 37 2 0 VHQKMT(0.869)Y(0.344)S(0.388)S(0.388)KVS(0.01)AK 43.382 0.035642 546330000 317480 218030 129220 86066 194900 333050 323120 282920 200190 367800 TRUE FALSE FALSE 295226.2915 200752.5087 179257.4446 200365.9975 170453.8246 291961.6772 242271.9584 218505.2921 217542.6304 275700.486 1.070822528 0.728154352 0.650189077 0.726752428 0.618257251 1.058981366 0.878750567 0.792545908 0.789054214 1 18.07274229 -6.251592712 24.9601227 0.889330795 0.749312386 0.210216572 0.13852434 1194.129638 3026977.356 0.047222846 0.046684845 5.60E-07 6.251592712 -0.140018408 VHS(ph)GEKPFVCNECGK ddPTM_HeLa_A486_30min_R1 1 VHSGEKPFVCNECGK 15 1 Q14592-2;Q14592 Q14592-2 ZNF460 Zinc finger protein 460 1 0 VHS(1)GEKPFVCNECGK 51.695 0.029082 279310000 64050 66471 37807 41368 69217 82421 108470 98615 56847 116690 TRUE FALSE FALSE 59560.42575 61203.59588 52446.88291 96306.79462 60535.15844 72252.73502 81329.65872 76162.51725 61774.54373 87470.06448 0.680923538 0.699709052 0.599598082 1.101025765 0.692067152 0.826028144 0.929799917 0.870726662 0.706236403 1 16.41650174 -5.213854005 24.99868894 0.862345121 0.664040049 0.404995714 0.118714519 423.8351014 222658.5148 0.030938226 0.053586417 6.11E-06 5.213854005 -0.198305072 VHS(ph)PCPTSGSEK ddPTM_HeLa_A485_30min_R1 1 VHSPCPTSGSEK 12 0 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 VHS(0.996)PCPT(0.004)SGSEK 100.11 0.0007812 313840000 365850 253280 195180 580650 348190 291090 448200 331100 262180 702550 TRUE FALSE FALSE 447232.0703 282898.8928 267385.2041 612369.4392 313522.981 306331.0223 352438.4085 249897.2059 314797.1211 527417.2145 0.847966388 0.536385398 0.506970946 1.16107215 0.594449655 0.58081347 0.668234557 0.473813139 0.596865465 1 19.00858513 -10.23582208 5.355810987 1.000027503 0.659454495 0.214312002 0.193499734 6.42E-05 9.17E-06 0.189414522 0.045936065 5.81E-11 10.23582208 -0.340573008 VHS(ph)PCPTSGSEK ddPTM_HeLa_A486_30min_R1 3 VHSPCPTSGSEK 12 0 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 VHS(1)PCPTSGSEK;VHS(1)PCPTSGSEK;VHS(0.998)PCPT(0.002)SGSEK ;; 225.21 2.67E-23 742960000 1369130 1602160 699555 586262 1127560 1836200 1975860 1722870 1333980 2178500 TRUE FALSE FALSE 1273161.057 1475199.007 970441.4307 1364847.564 986130.9107 1609668.313 1481478.929 1330610.111 1449610.46 1632989.42 0.779650524 0.903373279 0.594272944 0.835796942 0.603880771 0.985718764 0.907218939 0.814830822 0.887703522 1 20.63908401 -6.277023863 24.99408021 0.906779116 0.749131466 0.430066609 0.100524607 887.2353725 1422926.024 0.034693785 0.030700258 5.28E-07 6.277023863 -0.157647651 VHS(ph)PPASLVPR ddPTM_HeLa_A485_30min_R1 6 VHSPPASLVPR 11 0 Q9BTE3;Q9BTE3-2;Q9BTE3-3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR ;;;;; 153.81 3.20E-07 1292942000 718823 852647 787031 865335 1071897 831296 1082892 1151313 829939 1124562 TRUE FALSE FALSE 878722.6964 952356.6496 1078186.518 912606.0599 965175.171 874821.3731 851523.2778 868951.6816 996500.1446 844229.3894 1.040857743 1.128078057 1.27712507 1.080992999 1.143261752 1.036236578 1.0086397 1.029283856 1.180366565 1 19.68727553 -6.257644354 24.16251414 1.050093976 1.138730171 0.241235486 0.073500779 306.3273963 1950355.773 0.025169827 0.02425683 5.53E-07 6.257644354 0.088636195 VHS(ph)PPASLVPR ddPTM_HeLa_A486_30min_R1 6 VHSPPASLVPR 11 0 Q9BTE3;Q9BTE3-2;Q9BTE3-3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR;VHS(1)PPASLVPR ;;;;; 160.18 5.69E-08 1802063000 801344 858085 660402 295223 916363 826655 944437 949464 782854 909310 TRUE FALSE FALSE 745173.9237 790087.2195 916127.3406 687294.0637 801424.2078 724670.7109 708128.8734 733291.7739 850712.415 681612.8574 1.093250979 1.159143656 1.344058186 1.008334946 1.175776248 1.063170542 1.038901872 1.075818576 1.248087394 1 19.37859302 -5.287837565 24.98826901 1.090997342 1.194850305 0.235400651 0.0919551 1120.569792 1060718.28 0.025615971 0.038005848 5.15E-06 5.287837565 0.103852964 VHSIIESDPVT(ph)PPSDPSIPIPTLPSVTAAK ddPTM_HeLa_A485_30min_R1 1 VHSIIESDPVTPPSDPSIPIPTLPSVTAAK 30 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 VHSIIES(0.008)DPVT(0.983)PPS(0.008)DPSIPIPTLPSVTAAK 121.2 2.76E-05 54022000 56286 52225 50353 73904 70389 59744 71772 71135 60452 91379 TRUE FALSE FALSE 68806.62652 58332.25945 68980.67006 77941.18839 63380.82401 62872.10346 56437.32588 53689.02971 72584.1619 68599.89701 1.003013554 0.850325758 1.005550636 1.136170633 0.923920104 0.916504342 0.822702779 0.782640092 1.05807975 1 16.06591879 -5.981944201 24.99873887 0.899197085 0.993821808 0.130729565 0.098090641 453.8377299 628347.4336 0.031297155 0.035481582 1.04E-06 5.981944201 0.094624723 VHT(ph)GEKPYK ddPTM_HeLa_A485_30min_R1 2 VHTGEKPYK 9 1 P59923;F8VS19;Q76KX8;A0A087WVZ7;M0QXU9;K7EIK6;A0A494BZV4;K7ENM7;A0A1W2PPT3;K7EPV5;A6NK53;A0A3Q5AD24;P17020;P52740;Q14588;Q8N8Z8;Q02386;Q08AG5;Q9H7R5;Q9NYT6;A0A1W2PNY2;Q6ZN19-3;Q76KX8-2;Q9UK10;Q14590;Q9NZL3;Q9Y2L8;P17040-3;Q86YE8;P17040-2;Q9UJU3;Q9UJU3-2;Q8NHY6;Q9UJW7;Q14590-2;Q9UJW7-2;Q6ZN19;A0A494C069;Q86WZ6;Q14593-2;Q8N3J9;Q14586;Q8N8Z8-2;Q09FC8;P35789;Q5VIY5-2;P35789-3;Q7L2R6;Q5VIY5;Q8N8E2-3;Q9UK12-2;Q9UK11;Q9UK12;Q86YE8-3;Q96NJ3-2;B4DX44;Q6AZW8;Q09FC8-3;Q08AN1;Q86WZ6-2;Q09FC8-4;Q3KP31-2;P17022-2;P17022;Q09FC8-5;Q09FC8-6;Q09FC8-2;Q14593;Q3KP31;Q86YE8-2;Q86YE8-4;Q9P2F9;P52740-2;P0C7X5;Q96NJ3;P35789-2;Q9UL59;P17040;Q8N8E2-2;Q8N8E2;Q9HCG1;M0QZI7;A0A087WWD1;B7Z6K7;Q9NV72-2;Q9NV72;Q0VGE8;P17035-2;P17035;P0CJ79;P17028 P59923;Q8N8E2-2;A0A087WWD1;Q9NV72-2;P17028 ZNF445;ZNF844;ZNF534;ZNF229;ZNF160;ZNF285;ZNF45;ZNF233;ZNF16;ZNF132;ZNF234;ZNF441;ZNF665;ZNF226;ZNF841;ZNF225;ZNF235;ZNF224;ZKSCAN5;ZSCAN20;ZNF573;ZNF112;ZFP28;ZNF227;ZNF273;ZNF664;ZNF267;ZNF415;ZNF93;ZNF468;ZNF765;ZNF513;ZNF222;ZNF223;ZNF736;ZNF660;ZNF616;ZNF791;ZNF18;ZNF319;ZNF806;ZNF214;ZNF814;ZNF701;ZNF816;ZNF28;ZNF888;ZNF24 Zinc finger protein 445;Zinc finger protein 534;Zinc finger protein 233;Zinc finger protein 16;Zinc finger protein 132;Zinc finger protein 234;Zinc finger protein 441;Zinc finger protein 45;Zinc finger protein 844;Zinc finger protein 665;Zinc finger protein 226;Zinc finger protein 841;Zinc finger protein 225;Zinc finger protein 235;Zinc finger protein 224;Zinc finger protein with KRAB and SCAN domains 5;Zinc finger and SCAN domain-containing protein 20;Zinc finger protein 573;Zinc finger protein 112;Zinc finger protein 28 homolog;Zinc finger protein 229;Zinc finger protein 227;Zinc finger protein 273;Zinc finger protein 664;Zinc finger protein 267;Zinc finger protein 415;Zinc finger protein 93;Zinc finger protein 468;Zinc finger protein 765;Zinc finger protein 513;Zinc finger protein 222;Zinc finger protein 223;Zinc finger protein 285;Zinc finger protein 736;Zinc finger protein 660;Zinc finger protein 616;Zinc finger protein 791;Zinc finger protein 18;Zinc finger protein 319;Zinc finger protein 806;Zinc finger protein 214;Zinc finger protein 160;Putative uncharacterized zinc finger protein 814;Zinc finger protein 701;Zinc finger protein 816;Zinc finger protein 28;Zinc finger protein 888;Zinc finger protein 24 1 0 VHT(1)GEKPYK;VHT(1)GEKPYK ; 101.39 0.0019049 701130000 527760 343400 181495 960840 502870 437550 749640 713030 368770 1265020 TRUE FALSE FALSE 645158.3912 383557.6428 248637.5531 1013328.256 452802.4971 460459.4414 589473.29 538158.2745 442778.7564 949673.795 0.679347366 0.40388357 0.26181364 1.067027712 0.476797927 0.484860637 0.620711336 0.566676976 0.466242997 1 19.85707252 -10.0805933 4.42906396 1.000034269 0.557760538 0.299722198 0.202407066 90285647.03 24090.45974 34487.80304 0.048491069 8.31E-11 10.0805933 -0.442273731 VHT(ph)GEKPYK ddPTM_HeLa_A486_30min_R1 2 VHTGEKPYK 9 1 P59923;F8VS19;Q76KX8;A0A087WVZ7;M0QXU9;K7EIK6;A0A494BZV4;K7ENM7;A0A1W2PPT3;K7EPV5;A6NK53;A0A3Q5AD24;P17020;P52740;Q14588;Q8N8Z8;Q02386;Q08AG5;Q9H7R5;Q9NYT6;A0A1W2PNY2;Q6ZN19-3;Q76KX8-2;Q9UK10;Q14590;Q9NZL3;Q9Y2L8;P17040-3;Q86YE8;P17040-2;Q9UJU3;Q9UJU3-2;Q8NHY6;Q9UJW7;Q14590-2;Q9UJW7-2;Q6ZN19;A0A494C069;Q86WZ6;Q14593-2;Q8N3J9;Q14586;Q8N8Z8-2;Q09FC8;P35789;Q5VIY5-2;P35789-3;Q7L2R6;Q5VIY5;Q8N8E2-3;Q9UK12-2;Q9UK11;Q9UK12;Q86YE8-3;Q96NJ3-2;B4DX44;Q6AZW8;Q09FC8-3;Q08AN1;Q86WZ6-2;Q09FC8-4;Q3KP31-2;P17022-2;P17022;Q09FC8-5;Q09FC8-6;Q09FC8-2;Q14593;Q3KP31;Q86YE8-2;Q86YE8-4;Q9P2F9;P52740-2;P0C7X5;Q96NJ3;P35789-2;Q9UL59;P17040;Q8N8E2-2;Q8N8E2;Q9HCG1;M0QZI7;A0A087WWD1;B7Z6K7;Q9NV72-2;Q9NV72;Q0VGE8;P17035-2;P17035;P0CJ79;P17028 P59923;Q8N8E2-2;A0A087WWD1;Q9NV72-2;P17028 ZNF445;ZNF844;ZNF534;ZNF229;ZNF160;ZNF285;ZNF45;ZNF233;ZNF16;ZNF132;ZNF234;ZNF441;ZNF665;ZNF226;ZNF841;ZNF225;ZNF235;ZNF224;ZKSCAN5;ZSCAN20;ZNF573;ZNF112;ZFP28;ZNF227;ZNF273;ZNF664;ZNF267;ZNF415;ZNF93;ZNF468;ZNF765;ZNF513;ZNF222;ZNF223;ZNF736;ZNF660;ZNF616;ZNF791;ZNF18;ZNF319;ZNF806;ZNF214;ZNF814;ZNF701;ZNF816;ZNF28;ZNF888;ZNF24 Zinc finger protein 445;Zinc finger protein 534;Zinc finger protein 233;Zinc finger protein 16;Zinc finger protein 132;Zinc finger protein 234;Zinc finger protein 441;Zinc finger protein 45;Zinc finger protein 844;Zinc finger protein 665;Zinc finger protein 226;Zinc finger protein 841;Zinc finger protein 225;Zinc finger protein 235;Zinc finger protein 224;Zinc finger protein with KRAB and SCAN domains 5;Zinc finger and SCAN domain-containing protein 20;Zinc finger protein 573;Zinc finger protein 112;Zinc finger protein 28 homolog;Zinc finger protein 229;Zinc finger protein 227;Zinc finger protein 273;Zinc finger protein 664;Zinc finger protein 267;Zinc finger protein 415;Zinc finger protein 93;Zinc finger protein 468;Zinc finger protein 765;Zinc finger protein 513;Zinc finger protein 222;Zinc finger protein 223;Zinc finger protein 285;Zinc finger protein 736;Zinc finger protein 660;Zinc finger protein 616;Zinc finger protein 791;Zinc finger protein 18;Zinc finger protein 319;Zinc finger protein 806;Zinc finger protein 214;Zinc finger protein 160;Putative uncharacterized zinc finger protein 814;Zinc finger protein 701;Zinc finger protein 816;Zinc finger protein 28;Zinc finger protein 888;Zinc finger protein 24 1 0 VHT(1)GEKPYK;VHT(1)GEKPYK ; 104.59 0.0013429 504050000 837670 581400 285540 633240 548210 1108600 1232670 966990 583820 1562820 TRUE FALSE FALSE 778953.6587 535327.7466 396108.735 1474214.722 479448.3899 971832.2034 924242.9281 746827.4862 634425.9877 1171479.7 0.664931419 0.456967156 0.338126845 1.258421057 0.409267348 0.829576649 0.788953431 0.637507834 0.541559523 1 20.15990052 VHT(ph)GERPHQCPECGKR ddPTM_HeLa_A486_30min_R1 1 VHTGERPHQCPECGKR 16 2 C9JZE3;C9JYJ8;Q9BWE0;Q9BWE0-4 C9JZE3 REPIN1 Replication initiator 1 1 0 VHT(1)GERPHQCPECGKR 103.85 0.00020249 53216000 20198 16692 11398 12043 18407 20962 24118 23192 12022 28951 TRUE FALSE FALSE 18782.2245 15369.26513 15811.61085 28036.71262 16098.22242 18375.92157 18083.42131 17911.68788 13064.07664 21701.48116 0.865481225 0.708212726 0.72859593 1.291926224 0.741802935 0.846758865 0.833280511 0.825367068 0.601990092 1 14.40550589 -6.807276123 1.647952723 0.791166 0.869273231 0.017086506 0.179190262 1.767238387 9.750987401 0.104732836 0.061304812 1.56E-07 6.807276123 0.07810723 VHT(ph)PHLDR ddPTM_HeLa_A485_30min_R1 4 VHTPHLDR 8 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 1 0 VHT(1)PHLDR;VHT(1)PHLDR;VHT(1)PHLDR;VHT(1)PHLDR ;;; 124.67 0.00035208 953920000 621247 528280 311366 912959 459882 545078 865307 782046 492936 2095630 TRUE FALSE FALSE 759441.2519 590057.7506 426553.2404 962831.6384 414094.5333 573617.4412 680427.0905 590247.9923 591863.7337 1573228.008 0.482728027 0.375061814 0.271132498 0.612010232 0.263213299 0.364611765 0.432503799 0.375182738 0.376209761 1 20.58529635 -10.29820364 3.125463184 1.003860637 0.392696408 0.783657717 0.095399581 17059751.26 22975615.63 621988.7353 0.023334714 5.03E-11 10.29820364 -0.611164229 VHT(ph)PHLDR ddPTM_HeLa_A486_30min_R1 4 VHTPHLDR 8 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 1 0 VHT(1)PHLDR;VHT(1)PHLDR;VHT(1)PHLDR;VHT(1)PHLDR ;;; 104.79 0.001855 1377280000 512090 578049 402456 295367 742275 691852 762948 582129 625577 1167060 TRUE FALSE FALSE 476195.1354 532242.292 558297.7413 687629.303 649171.9481 606498.3345 572050.3408 449590.9345 679802.5181 874820.5797 0.544334629 0.608401659 0.638185423 0.786023236 0.742062959 0.693283113 0.653905903 0.513923592 0.777076504 1 19.73862763 -8.011100325 23.4914974 1.000000008 0.654788222 0.658784485 0.077969449 153.3312201 324494.5909 0.081316508 0.020995832 9.75E-09 8.011100325 -0.345211786 VHVGDEDFVHLR ddPTM_HeLa_A485_30min_R1 8 VHVGDEDFVHLR 12 0 P04080 P04080 CSTB Cystatin-B 0 0 ;;;;;;; ;;;;;;; 190.15 6.61E-13 3010363000 1043745.2 1430543 1335734.7 1054305 1506317.7 1333475 1606791 1845197 1131578.6 1434093 FALSE FALSE TRUE 1275922.719 1597832.56 1829878.55 1111899.013 1356343.421 1403293.689 1263486.977 1392659.543 1358676.046 1076600.008 1.185140916 1.484146896 1.699682832 1.032787483 1.259839691 1.303449451 1.173589976 1.293571923 1.26200635 1 20.03805091 -13.65429694 0.073390855 3.53E-07 1.665248473 0.254397651 0.167878056 380.0969135 2.125547157 64.91192543 8.211448519 2.22E-14 13.65429694 1.66524812 VHVGDEDFVHLR ddPTM_HeLa_A486_30min_R1 6 VHVGDEDFVHLR 12 0 P04080 P04080 CSTB Cystatin-B 0 0 ;;;;; ;;;;; 199.43 1.02E-16 1967868000 1285757 1489482 1272094 450630.3 1761781 1375293 1466484 1554851 1265405 1502026 FALSE FALSE TRUE 1195632.074 1371450.022 1764682.865 1049090.112 1540801.999 1205623.333 1099554.192 1200845.369 1375091.324 1125908.913 1.061926112 1.218082569 1.567340701 0.931771744 1.368496138 1.070800061 0.976592493 1.066556411 1.22131667 1 20.10265869 -6.374783601 10.26177116 1.064941464 1.23104223 0.187035166 0.169353925 0.755575026 63.9339779 0.058782531 0.051814792 4.22E-07 6.374783601 0.166100766 VHVIFNYK ddPTM_HeLa_A485_30min_R1 2 VHVIFNYK 8 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ; ; 168.99 2.29E-05 600280000 1611400 1783810 1481680 1816980 2030230 1641290 2166500 2282400 1339710 2380400 FALSE FALSE TRUE 1969850.371 1992411.062 2029815.09 1916237.017 1828093.173 1727225.406 1703609.576 1722637.821 1608577.508 1787010.088 1.102316313 1.114941139 1.135872205 1.072314605 1.022989845 0.966544855 0.95332958 0.96397767 0.900150211 1 20.76911635 -5.897528916 1.483738443 0.950755213 1.118541041 0.892407962 0.024777755 0.111756927 0.509607573 0.00938536 0.011434539 1.27E-06 5.897528916 0.167785828 VHVIFNYK ddPTM_HeLa_A486_30min_R1 2 VHVIFNYK 8 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ; ; 151.75 0.00010771 611740000 1842730 1824250 1290950 640860 1788710 1755210 2089270 1906860 1589800 2092660 FALSE FALSE TRUE 1713564.143 1679689.786 1790840.413 1491954.467 1564353.313 1538670.036 1566512.548 1472709.604 1727605.144 1568644.315 1.092385397 1.070790727 1.141648489 0.951110748 0.997264515 0.980891602 0.998641013 0.938842279 1.101336439 1 20.58108683 -5.262008589 24.9999292 0.9924958 1.098526458 0.549203131 0.043995091 36.6434358 1609420.746 0.011569142 0.018396674 5.47E-06 5.262008589 0.106030658 VHVQFFDDS(ph)PTR ddPTM_HeLa_A485_30min_R1 8 VHVQFFDDSPTR 12 0 A0A087WWJ1;P52701-2;P52701;A0A494C0M1;F8WAX8;C9J7Y7;C9JH55;C9J8Y8 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 VHVQFFDDS(0.999)PT(0.001)R;VHVQFFDDS(0.999)PT(0.001)R;VHVQFFDDS(0.988)PT(0.012)R;VHVQFFDDS(0.85)PT(0.15)R;VHVQFFDDS(0.992)PT(0.008)R;VHVQFFDDS(0.992)PT(0.008)R;VHVQFFDDS(0.974)PT(0.026)R;VHVQFFDDS(0.999)PT(0.001)R ;;;;;;; 222.56 4.77E-23 4568090000 1844633 2531495 2440670 2054016 2994090 2266934 2559323 2824630 2321863 2795423 TRUE FALSE FALSE 2254965.247 2827531.319 3343575.398 2166221.693 2695987.887 2385627.159 2012502.733 2131885.064 2787839.607 2098575.492 1.074521863 1.347357448 1.593259528 1.032234342 1.284675198 1.136784056 0.95898515 1.015872468 1.328443803 1 21.00097893 -5.890025506 1.37839871 1.082756887 1.313930157 0.210239334 0.172028837 0.630724085 2.49761693 0.070474062 0.087496483 1.29E-06 5.890025506 0.23117327 VHVQFFDDS(ph)PTR ddPTM_HeLa_A486_30min_R1 9 VHVQFFDDSPTR 12 0 A0A087WWJ1;P52701-2;P52701;A0A494C0M1;F8WAX8;C9J7Y7;C9JH55;C9J8Y8 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 VHVQFFDDS(0.948)PT(0.052)R;VHVQFFDDS(0.98)PT(0.02)R;VHVQFFDDS(0.957)PT(0.043)R;VHVQFFDDS(0.967)PT(0.033)R;VHVQFFDDS(0.837)PT(0.163)R;VHVQFFDDS(0.975)PT(0.025)R;VHVQFFDDS(0.954)PT(0.046)R;VHVQFFDDS(0.982)PT(0.018)R;VHVQFFDDS(1)PTR ;;;;;;;; 253.06 2.55E-33 3968210000 2616180 3022200 2478170 959008 3189890 2746080 3111380 3066250 2620920 3078560 TRUE FALSE FALSE 2432799.292 2782709.865 3437783.792 2232619.09 2789784.252 2407296.57 2332879.815 2368131.811 2848103.456 2307668.538 1.054223885 1.205853362 1.489721654 0.967478237 1.208918961 1.043172592 1.010924999 1.026201021 1.234190877 1 21.13800459 -5.299928948 24.99967372 1.07341158 1.245525512 0.290274912 0.128714109 695.9073926 452003.0674 0.036112803 0.053565333 5.01E-06 5.299928948 0.172113933 VHYRS(ph)PPLATGYR ddPTM_HeLa_A485_30min_R1 2 VHYRSPPLATGYR 13 1 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 0 VHY(0.002)RS(0.994)PPLAT(0.003)GY(0.001)R;VHYRS(0.952)PPLAT(0.048)GYR ; 80.585 0.0024212 1341120000 362380 573000 562810 266880 696930 523670 521870 705050 480860 399940 TRUE FALSE FALSE 442990.1808 640007.3656 771016.8395 281458.9786 627541.2021 551088.5515 410368.2112 532135.382 577364.1913 300242.3184 1.47544218 2.131636103 2.567981901 0.9374394 2.090115762 1.83547927 1.366790043 1.772353028 1.922994048 1 18.19576781 -11.31905846 0.254005431 7.66E-11 1.892501935 0.227190958 0.430412026 59.63445925 1.973667724 35.36925266 0.645598795 4.80E-12 11.31905846 1.892501935 VHYRS(ph)PPLATGYR ddPTM_HeLa_A486_30min_R1 2 VHYRSPPLATGYR 13 1 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 0 VHYRS(1)PPLATGYR;VHYRS(1)PPLATGYR ; 112.91 0.00012563 1099840000 474810 447160 378570 134887 534690 362860 467330 463320 351430 445570 TRUE FALSE FALSE 441528.2709 411725.4131 525162.4425 314023.7528 467624.1944 318094.0225 350399.0911 357832.1502 381892.2354 333996.3718 1.321955291 1.232724208 1.572359722 0.94020109 1.400087647 0.952387658 1.049110471 1.071365381 1.143402347 1 18.34947291 -5.709942286 1.132819464 1.058409024 1.343607187 0.340871315 0.161548286 0.56448072 1.529261905 0.064671069 0.101905918 1.95E-06 5.709942286 0.285198163 VIADNVK ddPTM_HeLa_A485_30min_R1 1 VIADNVK 7 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 103.92 0.026991 33634000 45675 45767 45227 68424 71908 51390 74709 58391 48379 99517 FALSE FALSE TRUE 55835.24617 51119.05253 61958.34935 72161.82986 64748.58704 54080.70094 58746.81183 44070.5157 58088.22154 74709.24337 0.747367309 0.684239998 0.82932642 0.965902298 0.866674378 0.723882327 0.786339269 0.589893749 0.77752389 1 16.18899913 -6.271889536 24.62063509 0.75057192 0.819999997 0.011018657 0.117477291 1756.506104 4138323.806 0.042215796 0.037633 5.35E-07 6.271889536 0.069428077 VIAHTQMR ddPTM_HeLa_A485_30min_R1 3 VIAHTQMR 8 0 H7C422;P39023;H7C3M2;B5MCW2;G5E9G0 H7C422 RPL3 60S ribosomal protein L3 0 0 ;; ;; 102.72 0.0063567 478246000 103485.7 166981.8 198666.3 94356.9 170082.9 155142.2 149425.7 172103.7 151175 126638.8 FALSE FALSE TRUE 126505.7369 186508.869 272161.2316 99511.37852 153148.8493 163265.2057 117499.6785 129894.9977 181514.4358 95070.07777 1.330657762 1.961804106 2.862743336 1.046716074 1.610904849 1.717314317 1.235927026 1.366307894 1.909269878 1 16.53670372 -5.292078205 24.99947415 1.441240628 2.042742701 0.308781564 0.436827589 847.5497481 691548.7676 0.122835541 0.182217625 5.10E-06 5.292078205 0.601502074 VIAHTQMR ddPTM_HeLa_A486_30min_R1 2 VIAHTQMR 8 0 H7C422;P39023;H7C3M2;B5MCW2;G5E9G0 H7C422 RPL3 60S ribosomal protein L3 0 0 ; ; 105.57 0.0035619 23068000 7209.9 9387.9 7915.1 3316.6 10518 12048.1 11339.3 11850 7154.8 18175.3 FALSE FALSE TRUE 6704.523242 8643.968614 10980.03869 7721.212412 9198.734364 10561.72792 8502.087205 9152.013684 7774.983825 13624.08658 0.492108091 0.634462249 0.805928429 0.566732483 0.675181731 0.775224662 0.624048237 0.671752461 0.570679273 1 13.73387189 -10.49908574 3.335215085 1.007403236 0.652990679 0.582438688 0.089696917 84029599.81 107378244.7 5694534.852 0.021844806 3.17E-11 10.49908574 -0.354412557 VICILSHPIK ddPTM_HeLa_A486_30min_R1 1 VICILSHPIK 10 0 P50395-2;P50395;Q5SX91 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 83.948 0.016736 14146000 16042 21717 16164 6551.3 21211 20657 22428 18877 18090 22886 FALSE FALSE TRUE 14917.53864 19996.06583 22423.13369 15251.75748 18550.5186 18108.54936 16816.27718 14579.11918 19658.05577 17155.19664 0.869563839 1.165598171 1.307075294 0.889045915 1.081335235 1.055572241 0.980243919 0.849836903 1.1458951 1 14.06635804 -5.288270208 24.99859317 0.998865691 1.119231136 0.140343885 0.12884939 1360.8211 1267889.772 0.036257723 0.053798053 5.15E-06 5.288270208 0.120365445 VIEPQYFGLAYLFR ddPTM_HeLa_A485_30min_R1 1 VIEPQYFGLAYLFR 14 0 P42704 P42704 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" 0 0 82.171 0.029808 5524300 5122 4174.5 5515.3 6247.9 6437.6 3936.8 4968.3 4408.4 4824.4 12229 FALSE FALSE TRUE 6261.371229 4662.671462 7555.638981 6589.206956 5796.64994 4142.924761 3906.782118 3327.232988 5792.612828 9180.535358 0.682026808 0.507886662 0.823006359 0.717736679 0.631406526 0.451272676 0.425550577 0.362422545 0.630966779 1 13.16436257 -8.034643845 23.32716663 1.000000006 0.573567985 0.466028561 0.135600316 2258.086738 1520463.865 0.146182834 0.037744245 9.23E-09 8.034643845 -0.42643202 VIEPQYFGLAYLFR ddPTM_HeLa_A486_30min_R1 2 VIEPQYFGLAYLFR 14 0 P42704 P42704 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" 0 0 ; ; 171.05 2.04E-07 14184800 8471 15158.2 15596 5356.7 14964.3 14688.2 14209.1 14836.4 14886.7 13809.5 FALSE FALSE TRUE 7877.226644 13957.00903 21635.18888 12470.66831 13087.33796 12876.11922 10653.83289 11458.4756 16177.09114 10351.51132 0.760973582 1.348306407 2.090051222 1.204719575 1.264292484 1.243887857 1.02920555 1.106937456 1.562775777 1 13.3375538 -5.441873644 24.99999972 1.203143696 1.436755086 0.066059723 0.332687841 260.7332063 80465.38326 0.09604392 0.142456125 3.62E-06 5.441873644 0.23361139 VIET(ph)PENDFK ddPTM_HeLa_A485_30min_R1 4 VIETPENDFK 10 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VIET(1)PENDFK;VIET(1)PENDFK;VIET(1)PENDFK;VIET(1)PENDFK ;;; 196.27 3.13E-10 1108860000 1991880 1484430 1450790 3392030 2610460 1615420 2392500 1807810 1748290 4089670 TRUE FALSE FALSE 2434966.834 1658021.176 1987497.593 3577328.01 2350553.437 1700000.893 1881322.83 1364441.763 2099155.767 3070190.534 0.793099584 0.540038528 0.647353176 1.165181109 0.765605069 0.553711854 0.612770709 0.444415989 0.683721659 1 21.54989676 -6.188107392 7.582673646 0.621528792 0.783322377 0.071075994 0.201728828 0.658742911 60.89480375 0.068288355 0.06826982 6.48E-07 6.188107392 0.161793585 VIET(ph)PENDFK ddPTM_HeLa_A486_30min_R1 3 VIETPENDFK 10 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VIET(1)PENDFK;VIET(1)PENDFK;VIET(1)PENDFK ;; 238.2 3.84E-20 915190000 2136350 2572180 1452810 1129470 2438210 2819130 3374800 3075710 1990550 3105610 TRUE FALSE FALSE 1986602.897 2368351.089 2015376.94 2629463.24 2132386.966 2471334.403 2530389.345 2375437.975 2163092.477 2327945.042 0.853371906 1.017356959 0.865732182 1.129521184 0.915995407 1.061594822 1.086962664 1.020401226 0.929185371 1 21.15062557 -5.241562358 24.99958162 1.021497349 0.922674015 0.307846829 0.073951463 1087.364677 1367590.591 0.019264193 0.033309161 5.73E-06 5.241562358 -0.098823334 VIET(ph)PENDFKHHR ddPTM_HeLa_A485_30min_R1 4 VIETPENDFKHHR 13 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VIET(1)PENDFKHHR;VIET(1)PENDFKHHR;VIET(1)PENDFKHHR;VIET(1)PENDFKHHR ;;; 223.07 2.15E-27 896060000 676284 1241150 807560 513927 1209270 1325390 1493680 2245370 725003 715022 TRUE FALSE FALSE 826721.0426 1386291.696 1106310.049 542001.5307 1088870.833 1394785.371 1174543.066 1694689.487 870504.452 536780.1744 1.540148243 2.582605994 2.061011383 1.009727178 2.028522819 2.598429371 2.188126764 3.157138746 1.621714984 1 19.03397186 -6.00252404 24.99543013 2.259358222 1.828896675 0.0254441 0.655362065 269.5239551 2669126.169 0.200514919 0.223593384 9.94E-07 6.00252404 -0.430461547 VIET(ph)PENDFKHHR ddPTM_HeLa_A486_30min_R1 2 VIETPENDFKHHR 13 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VIET(1)PENDFKHHR;VIET(1)PENDFKHHR ; 216.41 3.47E-27 165606000 223958 173139 146377 98890 287292 163654 257958 267186 126214 269459 TRUE FALSE FALSE 208259.7007 159418.8351 203058.0945 230220.9176 251257.1585 143464.0334 193414.18 206353.5804 137154.3311 201984.7125 1.031066649 0.789261886 1.005314174 1.139793773 1.243941461 0.710271741 0.95756841 1.021629696 0.679033227 1 17.62388658 -6.271537515 24.99230198 0.880294226 1.03125021 0.23634088 0.150313171 1272.533727 3149438.283 0.055107471 0.049158505 5.35E-07 6.271537515 0.150955984 VIFFLPWQK ddPTM_HeLa_A485_30min_R1 2 VIFFLPWQK 9 0 F5GYK7;P43304;P43304-2 F5GYK7 GPD2 "Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial" 0 0 ; ; 195.98 2.52E-11 41360000 114981 129393 95580 114292 122337 124915 168594 172727 88635 196358 FALSE FALSE TRUE 140558.1268 144524.3858 130939.0194 120535.4826 110156.6987 131455.3562 132572.5146 130365.4324 106423.2315 147409.5643 0.953521079 0.980427467 0.888266783 0.817691058 0.747283253 0.891769519 0.899348121 0.884375672 0.721956082 1 17.16947061 -4.91383702 3.92669046 0.846483754 0.966361728 0.265152742 0.075193401 0.272463322 8.014706426 0.019823995 0.04475977 1.22E-05 4.91383702 0.119877974 VIFFLPWQK ddPTM_HeLa_A486_30min_R1 2 VIFFLPWQK 9 0 F5GYK7;P43304;P43304-2 F5GYK7 GPD2 "Glycerol-3-phosphate dehydrogenase;Glycerol-3-phosphate dehydrogenase, mitochondrial" 0 0 ; ; 199.55 1.95E-11 39525000 93624 100842 77803 32243 110232 95248 109390 98096 112043 125899 FALSE FALSE TRUE 87061.44107 92850.91266 107930.4052 75063.33347 96405.67469 83497.27017 82019.46499 75761.68222 121754.9775 94373.07094 0.922524193 0.983870841 1.14365681 0.795389328 1.021537963 0.884757371 0.869098188 0.802789201 1.290145338 1 16.52608763 -7.758894693 24.99999983 1.145072648 0.932306078 0.350879241 0.118006479 69.65687011 684392.1694 0.086842836 0.029371225 1.74E-08 7.758894693 -0.212766569 VIFGLFGK ddPTM_HeLa_A485_30min_R1 3 VIFGLFGK 8 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 0 ;; ;; 163.41 0.00019038 438400000 871843 1035063 985693 940116 1356089 1049809 1336193 1330656 896600 1201927 FALSE FALSE TRUE 1065781.468 1156104.614 1350341.859 991472.1566 1221072.018 1104775.376 1050704.45 1004310.53 1076539.396 902308.7187 1.181171638 1.281273903 1.496540852 1.098816997 1.353275206 1.224387344 1.16446226 1.113045357 1.193094307 1 19.7832616 -7.567355389 0.469864593 1.004810382 1.30266684 0.397907341 0.103223945 0.932397194 0.536573179 0.114098933 0.071506722 2.71E-08 7.567355389 0.297856458 VIFGLFGK ddPTM_HeLa_A486_30min_R1 4 VIFGLFGK 8 0 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 0 ;;; ;;; 163.41 0.00019038 493431000 1224330 1290621 998711 471374 1819670 1249444 1494990 1364224 1190775 1383245 FALSE FALSE TRUE 1138510.789 1188347.492 1385438.646 1097382.494 1591430.021 1095300.303 1120927.69 1053619.976 1293992.336 1036871.449 1.098025017 1.146089511 1.336172047 1.058359255 1.534838309 1.056351107 1.081067177 1.016152945 1.247977594 1 19.98380561 VIFWSALAGAIPLNGDS(ph)EEEANRDDR ddPTM_HeLa_A485_30min_R1 2 VIFWSALAGAIPLNGDSEEEANRDDR 26 1 Q9H089 Q9H089 LSG1 Large subunit GTPase 1 homolog 1 0 VIFWSALAGAIPLNGDS(1)EEEANRDDR;VIFWSALAGAIPLNGDS(1)EEEANRDDR ; 243.86 6.72E-50 241910000 45554 50814 68664 57032 93620 52142 64184 61264 73016 80844 TRUE FALSE FALSE 55687.33014 56756.25528 94065.67095 60147.51375 84298.86408 54872.07449 50470.56406 46238.90794 87669.64146 60691.07862 0.917553805 0.935166363 1.549909362 0.991043743 1.388982796 0.904120931 0.831597744 0.761873227 1.444522712 1 15.88919684 -6.311331756 24.99570583 0.963738384 1.15689438 0.096011917 0.252292091 833.6042807 417626.8814 0.088497844 0.078047837 4.88E-07 6.311331756 0.193155997 VIFWSALAGAIPLNGDS(ph)EEEANRDDR ddPTM_HeLa_A486_30min_R1 2 VIFWSALAGAIPLNGDSEEEANRDDR 26 1 Q9H089 Q9H089 LSG1 Large subunit GTPase 1 homolog 1 0 VIFWSALAGAIPLNGDS(1)EEEANRDDR;VIFWSALAGAIPLNGDS(1)EEEANRDDR ; 207.99 7.39E-29 215550000 10781.5 10808.8 9847.2 4926.8 11774.4 4912.9 10614.9 11975.6 8538.5 9177.1 TRUE FALSE FALSE 10025.77253 9952.271323 13660.29956 11469.83939 10297.54496 4306.796349 7958.939747 9249.017306 9278.624055 6879.094427 1.457426211 1.44674149 1.985770031 1.667347281 1.496933218 0.626070247 1.156974923 1.344510881 1.348814754 1 12.74800294 -6.017919727 23.5535615 1.114088904 1.641790568 0.551470154 0.234993103 292.994378 385109.8175 0.081417101 0.083165004 9.60E-07 6.017919727 0.527701664 VIGAK(ac)K(ac)DQYFLDK ddPTM_HeLa_A485_30min_R1 2 VIGAKKDQYFLDK 13 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 2 ; VIGAK(1)K(1)DQYFLDK;VIGAK(1)K(1)DQYFLDK 190.85 4.47E-14 106140000 63841 67197 58216 79281 86144 69834 89519 81661 67460 116295 FALSE TRUE FALSE 78042.2102 75055.10461 79752.52097 83611.92028 77567.20089 73490.40026 70392.53435 61633.51171 80998.60322 87304.79675 0.893905182 0.859690503 0.913495294 0.957701334 0.888464366 0.841768184 0.806284843 0.705957908 0.927768075 1 16.4137733 -6.221840903 3.955808114 0.834281348 0.905134115 0.050699081 0.076533796 0.432632811 14.78936865 0.026053725 0.025187053 6.00E-07 6.221840903 0.070852766 VIGAK(ac)K(ac)DQYFLDK ddPTM_HeLa_A486_30min_R1 2 VIGAKKDQYFLDK 13 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 2 ; VIGAK(1)K(1)DQYFLDK;VIGAK(1)K(1)DQYFLDK 214.81 8.35E-21 134159000 119504 134167 85806 44141 133937 141163 156011 145466 124088 154667 FALSE TRUE FALSE 111127.3867 123535.1183 119032.3812 102762.4788 117137.3725 123747.7443 116975.3977 112346.5673 134844.0478 115937.3765 0.958512173 1.065533153 1.026695487 0.886361947 1.010350381 1.067367126 1.008953292 0.969028028 1.163076584 1 16.82298622 -6.003218692 24.99406193 1.037831889 0.987515587 0.146254927 0.065002171 309.9847293 2407146.809 0.020492719 0.022815571 9.93E-07 6.003218692 -0.050316303 VIGAK(ac)K(ac)DQYFLDKK ddPTM_HeLa_A485_30min_R1 2 VIGAKKDQYFLDKK 14 3 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 2 ; VIGAK(1)K(1)DQYFLDKK;VIGAK(1)K(1)DQYFLDKK 248.23 3.87E-40 1011850000 520827 489705 313664 653412 650332 634502 930939 974500 496279 969901 FALSE TRUE FALSE 636683.1693 546971.7399 429701.3662 689106.243 585582.6626 667723.5436 732036.2776 735502.347 595877.6432 728122.5304 0.874417619 0.751208371 0.590149801 0.946415218 0.804236427 0.91704832 1.005375122 1.010135405 0.818375505 1 19.47382173 -5.898721904 1.29080676 0.956430248 0.754301422 0.398958997 0.098774201 0.43603375 1.522323396 0.04157987 0.051845972 1.26E-06 5.898721904 -0.202128826 VIGAK(ac)K(ac)DQYFLDKK ddPTM_HeLa_A486_30min_R1 2 VIGAKKDQYFLDKK 14 3 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 2 ; VIGAK(1)K(1)DQYFLDKK;VIGAK(1)K(1)DQYFLDKK 248.23 3.87E-40 1089880000 1213730 1203270 528130 465230 1229170 1436670 1820880 1666800 1062550 1991410 FALSE TRUE FALSE 1128653.795 1107918.503 732636.0798 1083078.951 1074996.037 1259428.262 1365276.565 1287306.026 1154652.69 1492747.974 0.756091326 0.742200641 0.490796901 0.72556049 0.720145702 0.843697854 0.914606208 0.86237332 0.773508127 1 20.50953918 -6.186451815 2.130356198 0.877899336 0.670463471 0.557652286 0.086591031 0.258277953 2.302908932 0.033992801 0.03290074 6.51E-07 6.186451815 -0.207435865 VIGSGCNLDSAR ddPTM_HeLa_A485_30min_R1 2 VIGSGCNLDSAR 12 0 P00338;P00338-3;P00338-2;P00338-5;P00338-4;F5H155;Q6ZMR3;F5H5G7;P07864;A0A087WUM2;G3XAP5;F5H245;A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50 P00338;A0A5F9ZHM4 LDHA;LDHC;LDHAL6A;LDHB L-lactate dehydrogenase A chain;L-lactate dehydrogenase;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain 0 0 ; ; 275.67 2.99E-50 295680000 120484 179208 189193 146478 232910 165863 213420 212470 168850 224540 FALSE FALSE TRUE 147285.2501 200164.8167 259183.3637 154479.7222 209720.6626 174547.3302 167821.0735 160361.3994 202736.6462 168566.3104 0.873752589 1.187454458 1.537575113 0.916432957 1.244143401 1.035481704 0.995578969 0.951325321 1.202711537 1 17.3629567 -6.322994638 11.2508072 1.031289525 1.162174307 0.089132664 0.181634436 2.282316548 412.9794225 0.064232079 0.0566448 4.75E-07 6.322994638 0.130884782 VIGSGCNLDSAR ddPTM_HeLa_A486_30min_R1 2 VIGSGCNLDSAR 12 0 P00338;P00338-3;P00338-2;P00338-5;P00338-4;F5H155;Q6ZMR3;F5H5G7;P07864;A0A087WUM2;G3XAP5;F5H245;A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50 P00338;A0A5F9ZHM4 LDHA;LDHC;LDHAL6A;LDHB L-lactate dehydrogenase A chain;L-lactate dehydrogenase;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain 0 0 ; ; 192.44 4.98E-10 68630000 48414 54071 47115 21117.8 68177 56500 65729 68788 49274 56895 FALSE FALSE TRUE 45020.42861 49786.21704 65359.18978 49163.30563 59625.60493 49529.60445 49282.90899 53126.47403 53545.10999 42648.12168 1.055625121 1.167371858 1.532522119 1.152766024 1.39808279 1.161354885 1.155570446 1.245693173 1.25550922 1 15.38019458 VIHDNFGIVEGLMTTVHAIT(ph)ATQK ddPTM_HeLa_A485_30min_R1 1 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIHDNFGIVEGLMTTVHAIT(0.888)AT(0.112)QK 223.42 7.29E-38 20655000 12649 20945 16660 25694 21073 25029 30910 36890 19796 29562 TRUE FALSE FALSE 15462.72641 23394.33555 22823.22728 27097.59816 18974.89813 26339.47974 24305.82599 27842.66966 23768.87562 22192.73745 0.696747143 1.054143753 1.028409737 1.221011974 0.855004849 1.18685132 1.095215317 1.254584736 1.071020449 1 14.43780001 -3.936975322 1.652489468 1.100563985 0.17751282 0.525524436 0.110635085 1.998113824 2.643953208 0.0294392 3.811300502 0.000115618 3.936975322 -0.923051165 VIHDNFGIVEGLMTTVHAIT(ph)ATQK ddPTM_HeLa_A486_30min_R1 1 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIHDNFGIVEGLMT(0.023)T(0.023)VHAIT(0.858)AT(0.095)QK 159.1 3.68E-10 20578000 24661 24576 17318 11934 21491 24968 30495 27330 22310 29115 TRUE FALSE FALSE 22932.39125 22628.50826 24023.99339 27782.95511 18795.39838 21887.70202 22864.82846 21107.55561 24243.84876 21824.41449 1.050767765 1.036843773 1.100785242 1.273021786 0.861209742 1.00289985 1.047672022 0.967153351 1.110859069 1 14.41365533 -5.769918403 24.99977845 0.999355405 1.108706061 0.316914143 0.083955492 251.8371432 742522.0689 0.026452695 0.030478031 1.70E-06 5.769918403 0.109350657 VIHDNFGIVEGLMTTVHAITAT(ph)QK ddPTM_HeLa_A485_30min_R1 1 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIHDNFGIVEGLMT(0.002)T(0.008)VHAIT(0.337)AT(0.654)QK 160.78 1.32E-13 22619000 15108 17638 14301 22127 20977 20960 24372 28271 17783 27318 TRUE FALSE FALSE 18468.72248 19700.61067 19591.53501 23335.74198 18888.45623 22057.43319 19164.7231 21337.49292 21351.88498 20508.12535 0.900556348 0.960624647 0.955305991 1.13787787 0.921023053 1.075546049 0.934494147 1.040440926 1.041142699 1 14.323908 -5.02239112 24.90797198 1.019856242 0.937434159 0.282227312 0.06103608 893.7306551 994190.9841 0.015534296 0.02719002 9.50E-06 5.02239112 -0.082422083 VIHDNFGIVEGLMTTVHAITAT(ph)QK ddPTM_HeLa_A486_30min_R1 1 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIHDNFGIVEGLMTT(0.002)VHAIT(0.146)AT(0.852)QK 100.24 0.0020718 34820000 32373 26301 19282 20594 37541 33522 41866 42625 23279 44295 TRUE FALSE FALSE 30103.81987 24216.81297 26748.50679 47943.87276 32832.25772 29386.39647 31390.68399 32920.218 25296.84246 33203.24369 0.906652981 0.729350819 0.805599207 1.443951477 0.988826816 0.885045953 0.945410162 0.991475963 0.76187865 1 15.01903657 -5.08768583 24.99996986 1.00423358 0.805164136 0.206239547 0.169180382 110.4160652 31477.45332 0.047393378 0.082087787 8.17E-06 5.08768583 -0.199069444 VIHDNFGIVEGLMTTVHAITATQK ddPTM_HeLa_A485_30min_R1 13 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;;;;;;;;;; ;;;;;;;;;;;; 396.92 6.09E-199 4657553000 1879470.1 1846041.7 1714355.6 1889245.7 2222732 2650637.9 3131638.3 3770758.1 1536353.1 2813112.6 FALSE FALSE TRUE 2297551.74 2061920.218 2348567.077 1992450.409 2001428.998 2789421.202 2462538.194 2845973.764 1844685.075 2111855.4 1.087930423 0.976354829 1.112087066 0.943459675 0.947711191 1.320839107 1.166054359 1.347617722 0.873490237 1 21.01007963 -6.237318334 24.80088743 1.164854807 1.013029506 0.163738426 0.139885416 1081.79438 1112284.638 0.044269693 0.044246596 5.79E-07 6.237318334 -0.151825301 VIHDNFGIVEGLMTTVHAITATQK ddPTM_HeLa_A486_30min_R1 14 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;;;;;;;;;;; ;;;;;;;;;;;;; 365.69 2.43E-154 5189539100 657250.1 800237.8 693926.8 350975.28 2572169.6 859219 1119391 1000666.6 818871.5 1025292 FALSE FALSE TRUE 611180.262 736824.0423 962633.841 817088.1891 2249544.104 753217.2957 839307.5321 772836.6596 889851.9409 768552.2097 0.79523584 0.958716966 1.252528883 1.063152482 2.926989313 0.980047011 1.092063131 1.005574702 1.157828876 1 19.55178374 -4.731578153 2.061046229 1.353108388 0.802649282 0.092304813 0.552275597 0.894976893 7.107513205 0.161506457 0.64831614 1.86E-05 4.731578153 -0.550459106 VIHDNFGIVEGLMTTVHAITATQK(ac)TVDGPSGK ddPTM_HeLa_A486_30min_R1 2 VIHDNFGIVEGLMTTVHAITATQKTVDGPSGK 32 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; VIHDNFGIVEGLMTTVHAITATQK(1)TVDGPSGK;VIHDNFGIVEGLMTTVHAITATQK(1)TVDGPSGK 134.04 1.91E-14 18674500 15280.3 23587.6 17260.8 7609.9 29350 28520.9 31700.5 29104.2 26049.5 27696 FALSE TRUE FALSE 14209.22988 21718.43267 23944.64402 17716.23178 25668.64932 25002.28134 23768.69961 22477.809 28307.49163 20760.74133 0.684427866 1.04612992 1.153361705 0.853352561 1.236403311 1.204305807 1.144886843 1.082707435 1.363510637 1 14.34157034 -3.83858482 1.232677061 1.140076225 3.80E-33 0.509867322 0.130072591 3.057887265 1.972768557 0.038077951 5.702330098 0.000145016 3.83858482 -1.140076225 VIIAHLPLLICCLQGLGR ddPTM_HeLa_A485_30min_R1 1 VIIAHLPLLICCLQGLGR 18 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 0 0 195.43 1.88E-22 5196000 6707.9 6313.5 8890.3 6371.1 8831 6314.7 8268.9 6464.2 5141.2 9247.7 FALSE FALSE TRUE 8200.049213 7051.808905 12179.19193 6719.137061 7951.754632 6645.327928 6502.181964 4878.844815 6172.991682 6942.418581 1.181151657 1.015756803 1.754315414 0.967838079 1.145386804 0.957206462 0.936587428 0.702758665 0.889170195 1 12.76122264 -6.115096447 1.27642008 0.855841053 1.266451562 0.386479474 0.207301361 0.448574871 1.503910851 0.094625848 0.09690647 7.67E-07 6.115096447 0.410610509 VIIAHLPLLICCLQGLGR ddPTM_HeLa_A486_30min_R1 1 VIIAHLPLLICCLQGLGR 18 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 0 0 159.02 2.74E-14 3234800 2942.5 4271.2 4007 1876.5 4945.1 4034.8 3881.9 4172.2 3393.9 5451.9 FALSE FALSE TRUE 2736.245945 3932.734557 5558.617711 4368.586833 4324.839447 3537.027399 2910.607561 3222.281138 3688.085985 4086.708754 0.669547577 0.962323178 1.360169771 1.06897435 1.058269553 0.865495344 0.712213112 0.788478292 0.902458728 1 11.99672372 -6.321277953 4.840343281 0.828511034 1.041826806 0.186800346 0.17256676 0.331161254 16.17233697 0.065240573 0.057908338 4.77E-07 6.321277953 0.213315772 VIISAPS(ph)ADAPMFVMGVNHEK ddPTM_HeLa_A485_30min_R1 1 VIISAPSADAPMFVMGVNHEK 21 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIISAPS(1)ADAPMFVMGVNHEK 231.07 2.41E-36 86940000 36547 48982 46336 83640 62348 62242 57464 61070 54060 107010 TRUE FALSE FALSE 44676.75406 54710.01881 63477.6146 88209.04141 56140.4142 65500.89488 45186.34696 46092.48675 64909.34613 80334.37637 0.556134946 0.681028736 0.790167516 1.098023603 0.698834257 0.81535325 0.562478344 0.573757946 0.807989668 1 16.29372985 VIISAPS(ph)ADAPMFVMGVNHEK ddPTM_HeLa_A486_30min_R1 1 VIISAPSADAPMFVMGVNHEK 21 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIIS(0.022)APS(0.978)ADAPMFVMGVNHEK 120.85 1.14E-05 104740000 65964 42838 35666 36471 55843 50920 61401 62486 62008 74368 TRUE FALSE FALSE 61340.26424 39443.36087 49476.83037 84906.33114 48838.65022 44638.00812 46037.82037 48259.30186 67382.90337 55745.76875 1.100357312 0.707557932 0.88754414 1.523099117 0.876096093 0.800742534 0.82585318 0.865703406 1.208753684 1 15.76657468 VIISAPSADAPMFVMGVNHEK ddPTM_HeLa_A485_30min_R1 8 VIISAPSADAPMFVMGVNHEK 21 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;;;;; ;;;;;;; 323.1 1.46E-108 1396626000 1734523 1383658 1490518 2137814 2054295 1778433 2232313 1860612 1643579 2837707 FALSE FALSE TRUE 2120361.657 1545464.767 2041922.634 2254597.366 1849762.177 1871549.002 1755361.091 1404293.99 1973430.23 2130318.869 0.995325952 0.725461709 0.958505632 1.058337979 0.868302959 0.878529984 0.823989834 0.659194269 0.926354387 1 21.02263796 -6.380507211 2.380292752 0.826879358 0.921495348 0.057751628 0.116015733 0.697789618 7.7462265 0.046904604 0.04007688 4.16E-07 6.380507211 0.09461599 VIISAPSADAPMFVMGVNHEK ddPTM_HeLa_A486_30min_R1 7 VIISAPSADAPMFVMGVNHEK 21 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;;;; ;;;;;; 338.73 2.08E-109 1332781000 1491136 1905438 1389087 577602 1963143 2006257 2114231 2000400 1815144 2202599 FALSE FALSE TRUE 1386615.067 1754444.153 1926978.687 1344686.646 1716907.299 1758745.409 1585228.042 1544952.588 1972482.143 1651053.874 0.839836355 1.062620779 1.167120418 0.814441411 1.039885692 1.065225937 0.960131021 0.935737236 1.194680667 1 20.65495577 -7.747164382 24.99123975 1.097340418 0.992147397 0.139439084 0.110062264 419.9667102 735243.8701 0.0734658 0.027471943 1.79E-08 7.747164382 -0.105193021 VIISAPSADAPMFVMGVNHEKYDNSLK ddPTM_HeLa_A485_30min_R1 4 VIISAPSADAPMFVMGVNHEKYDNSLK 27 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 364.55 2.10E-155 314235000 196586 275885 178372 167945 343400 449418 588569 898718 225463 279532 FALSE FALSE TRUE 240315.8775 308147.3509 244359.2255 177119.4101 309209.8902 472948.8315 462816.425 678306.0014 270711.356 209849.8168 1.145180306 1.468418489 1.164448124 0.844029377 1.473481821 2.25374908 2.205464994 3.232340212 1.290024267 1 17.67899768 -6.124216374 3.971024453 2.14681276 1.176039755 0.297780847 0.587509413 0.251609194 6.842481358 0.192446432 0.194048661 7.51E-07 6.124216374 -0.970773005 VIISAPSADAPMFVMGVNHEKYDNSLK ddPTM_HeLa_A486_30min_R1 1 VIISAPSADAPMFVMGVNHEKYDNSLK 27 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 278.67 7.14E-73 94196000 53955 44967 29472 22906 76455 50776 77675 82078 39406 94509 FALSE FALSE TRUE 50173.03312 41403.65115 40884.34769 53326.32561 66865.30099 44511.77337 58239.89344 63390.63115 42821.74381 70843.33125 0.70822521 0.584439642 0.577109334 0.752735997 0.943847499 0.628312822 0.822094224 0.894800259 0.604456948 1 16.11234443 -13.99999938 0.039761865 2.243222758 9.86E-13 0.342346018 0.120628695 967.5969058 2.867972491 145.2745581 43.91563299 1.00E-14 13.99999938 -2.243222758 VIKDEALS(ph)DGDDLRDFPSDLKK ddPTM_HeLa_A485_30min_R1 2 VIKDEALSDGDDLRDFPSDLKK 22 3 Q01831-2;Q01831;E7EUB5;Q01831-3 Q01831-2 XPC DNA repair protein complementing XP-C cells 1 0 VIKDEALS(1)DGDDLRDFPSDLKK;VIKDEALS(1)DGDDLRDFPSDLKK ; 130.23 1.78E-06 264070000 342700 240747 137291 584410 450080 337510 632490 1000170 314670 1412320 TRUE FALSE FALSE 418932.4327 268900.2674 188080.6541 616334.8385 405268.4549 355181.5017 497353.3445 754876.7393 377821.3827 1060254.616 0.395124366 0.253618577 0.177391969 0.581308328 0.382236916 0.334996421 0.469088592 0.711976848 0.35634967 1 20.01597933 -13.99999998 0.137527151 3.084568637 0.182314443 0.666367934 0.132798676 81.29726202 0.68921187 46.16430354 0.854524325 1.00E-14 13.99999998 -2.902254194 VIKDEALS(ph)DGDDLRDFPSDLKK ddPTM_HeLa_A486_30min_R1 4 VIKDEALSDGDDLRDFPSDLKK 22 3 Q01831-2;Q01831;E7EUB5;Q01831-3 Q01831-2 XPC DNA repair protein complementing XP-C cells 1 0 VIKDEALS(1)DGDDLRDFPSDLKK;VIKDEALS(1)DGDDLRDFPSDLKK;VIKDEALS(1)DGDDLRDFPSDLKK;VIKDEALS(1)DGDDLRDFPSDLKK ;;; 133.44 7.58E-06 450917000 621908 507867 172653 357265 460691 693121 972509 827463 304312 912705 TRUE FALSE FALSE 578315.4607 467621.7693 239508.8654 831730.9752 402906.839 607610.7782 729176.962 639067.7383 330690.0092 684157.7273 0.845295518 0.683499945 0.350078433 1.215700623 0.588909286 0.888115056 1.065802421 0.934094161 0.483353467 1 19.38396944 -5.252904388 24.99847293 0.875201919 0.632012203 0.204183679 0.231217152 1087.215419 3184381.537 0.062031378 0.105298019 5.59E-06 5.252904388 -0.243189715 VILAS(ph)PETSSAK ddPTM_HeLa_A485_30min_R1 1 VILASPETSSAK 12 0 P49116;P49116-2;C9JKS0 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 VILAS(0.986)PET(0.01)S(0.002)S(0.003)AK 109.44 0.00052654 0 118500 125600 99659 178470 160210 143610 177350 195260 120320 227850 TRUE FALSE FALSE 144859.9162 140287.8274 136527.0113 188219.3642 144258.9299 151129.1975 139457.7237 147372.1788 144467.1204 171051.1883 0.846880502 0.820151142 0.798164647 1.100368645 0.843367014 0.883531995 0.815298187 0.8615677 0.844584138 1 17.3840686 VILAS(ph)PETSSAK ddPTM_HeLa_A486_30min_R1 1 VILASPETSSAK 12 0 P49116;P49116-2;C9JKS0 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 VILAS(0.543)PET(0.096)S(0.143)S(0.217)AK 85.42 0.0025445 0 218330 249080 133510 135820 210970 224490 275010 256080 156300 344690 TRUE FALSE FALSE 203026.1945 229341.9937 185208.6475 316195.824 184508.1754 196794.7062 206199.5892 197776.1742 169848.2098 258377.3804 0.785773871 0.887624115 0.71681448 1.223775175 0.714103437 0.761656094 0.798055886 0.765454677 0.657364857 1 17.97912025 VILDLTPNYR ddPTM_HeLa_A485_30min_R1 1 VILDLTPNYR 10 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 99.653 0.018493 19981000 17414 32689 24970 17274 40323 15670 19635 15480 22520 26921 FALSE FALSE TRUE 21287.68422 36511.69419 34207.44209 18217.63488 36308.30054 16490.45697 15439.82185 11683.50573 27039.55743 20210.09014 1.053319608 1.806607191 1.692592257 0.901412846 1.796543226 0.815951678 0.763966006 0.578102603 1.337923643 1 14.30278814 -6.280995178 24.49555286 0.864368704 1.452890984 0.40592985 0.331885158 608.2984818 761950.7513 0.114056794 0.100742026 5.24E-07 6.280995178 0.58852228 VILHLK ddPTM_HeLa_A485_30min_R1 2 VILHLK 6 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8;Q14568 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 0 ; ; 100.78 0.0098353 549970000 1314340 1148130 1213900 1482110 1403720 1076390 1390510 1108820 1249690 1872140 FALSE FALSE TRUE 1606710.399 1282393.816 1662972.125 1563073.916 1263960.708 1132748.116 1093416.179 836880.1564 1500491.32 1405449.952 1.143200009 0.912443601 1.183231123 1.112151958 0.899328152 0.805968305 0.777983006 0.595453545 1.067623445 1 20.42260065 -5.897202948 3.861722101 0.822035592 1.081691842 0.395998737 0.137796279 0.214499373 6.044832195 0.043208303 0.049579062 1.27E-06 5.897202948 0.25965625 VILHLK ddPTM_HeLa_A486_30min_R1 3 VILHLK 6 0 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8;Q14568 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1;HSP90AA2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 0 ;; ;; 112.58 0.0066363 1079710000 2271420 2706290 1915660 798260 3961750 2587610 2737440 2585100 2416020 2586150 FALSE FALSE TRUE 2112205.188 2491833.724 2657454.855 1858389.622 3464830.373 2268376.987 2052503.558 1996529.162 2625442.559 1938561.207 1.089573638 1.285403688 1.370838767 0.958643769 1.787320597 1.170134313 1.058776762 1.029902566 1.354325336 1 20.88655486 -6.508155863 24.97211952 1.113416204 1.302384107 0.141599552 0.22010087 1359.346573 2305653.758 0.077571995 0.066012036 3.10E-07 6.508155863 0.188967903 VILHLKEDQTEYLEER ddPTM_HeLa_A485_30min_R1 2 VILHLKEDQTEYLEER 16 1 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 0 ; ; 250.52 1.38E-42 64379000 82314 96904 99167 74694 126776 103909 127972 159348 95775 127202 FALSE FALSE TRUE 100624.4653 108236.0798 135853 78774.34408 114153.7363 109349.5146 100629.7368 120267.6532 114996.164 95492.88238 1.053737858 1.133446568 1.422650533 0.824923723 1.195416176 1.14510644 1.05379306 1.25944102 1.204238066 1 16.54310558 -7.24995885 24.73964483 1.173879668 1.123414104 0.006182438 0.152503392 3354.472272 7228639.462 0.071019721 0.040452278 5.62E-08 7.24995885 -0.050465564 VILHLKEDQTEYLEER ddPTM_HeLa_A486_30min_R1 2 VILHLKEDQTEYLEER 16 1 P08238;Q58FF7;Q58FF6;P07900;P07900-2;G3V2J8 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 0 ; ; 272.69 2.29E-54 49104000 64775 60875 51448 26156 78243 61787 77046 80686 53559 75696 FALSE FALSE TRUE 60234.607 56051.0433 71370.04343 60892.48985 68429.03335 54164.34814 57768.27589 62315.55916 58201.53724 56741.2289 1.061566839 0.987836259 1.257816315 1.07316128 1.205984338 0.95458539 1.018100542 1.098241268 1.025736283 1 15.79210978 -6.269180337 24.99719057 1.025395771 1.115439387 0.282287542 0.077756474 919.1083745 2967986.812 0.027562379 0.02473665 5.38E-07 6.269180337 0.090043616 VILSNMVSISSEPFGHLVDDDDIS(ph)DQEDHRSEEK ddPTM_HeLa_A485_30min_R1 3 VILSNMVSISSEPFGHLVDDDDISDQEDHRSEEK 34 1 A8MUM1;Q53HC9 A8MUM1 TSSC1 Protein TSSC1 1 0 VILSNMVSISSEPFGHLVDDDDIS(0.998)DQEDHRS(0.002)EEK;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHRSEEK;VILSNMVSISSEPFGHLVDDDDIS(0.787)DQEDHRS(0.213)EEK ;; 264.54 1.71E-64 563150000 72583.5 93989 100272 51304 137343 101173 144307 150211 82693 112630 TRUE FALSE FALSE 88729.44916 104980.196 137366.7855 54106.60761 123668.6487 106470.2618 113474.6306 113371.5167 99288.72659 84553.4138 1.049389317 1.241584358 1.624615486 0.639910385 1.462609765 1.259207134 1.342046707 1.340827196 1.17427224 1 16.36757538 VILSNMVSISSEPFGHLVDDDDIS(ph)DQEDHRSEEK ddPTM_HeLa_A486_30min_R1 4 VILSNMVSISSEPFGHLVDDDDISDQEDHRSEEK 34 1 A8MUM1;Q53HC9 A8MUM1 TSSC1 Protein TSSC1 1 0 VILSNMVSISSEPFGHLVDDDDIS(0.99)DQEDHRS(0.01)EEK;VILSNMVSISSEPFGHLVDDDDIS(1)DQEDHRSEEK;VILSNMVSISSEPFGHLVDDDDIS(0.992)DQEDHRS(0.008)EEK;VILSNMVSISSEPFGHLVDDDDIS(0.94)DQEDHRS(0.06)EEK ;;; 315.58 5.44E-110 646299000 159381 201699 198281 22653 299349 206953 245951 222246 212539 103127 TRUE FALSE FALSE 148209.2149 185715.6367 275060.7133 52737.32882 261801.8571 181421.243 184411.4584 171645.4374 230962.0516 77303.32796 1.91724236 2.402427445 3.558200153 0.682212916 3.386682877 2.346874938 2.385556525 2.220414592 2.987737498 1 16.2382429 -9.474261677 6.977309825 1.000000004 2.430718155 0.239168453 0.766184046 0 0 0.693847386 0.168282709 3.36E-10 9.474261677 1.430718151 VINAAHSFYNGTTTLPISDEDRT(ph)PR ddPTM_HeLa_A485_30min_R1 3 VINAAHSFYNGTTTLPISDEDRTPR 25 1 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 VINAAHSFYNGTTTLPIS(0.005)DEDRT(0.995)PR;VINAAHSFYNGT(0.29)T(0.165)T(0.094)LPIS(0.028)DEDRT(0.423)PR;VINAAHSFYNGTTT(0.001)LPIS(0.001)DEDRT(0.998)PR ;; 270.81 2.09E-63 2914230000 652250 776880 767190 598630 863790 856100 943030 1090650 654450 737620 TRUE FALSE FALSE 797340.7623 867729.358 1051005.506 631331.6411 777788.0346 900924.0722 741543.9367 823166.3774 785792.112 553744.9089 1.439906263 1.56702002 1.897995791 1.140112768 1.404596272 1.626965879 1.339143575 1.486544371 1.419050721 1 19.078862 -12.23078916 0.210651592 4.21E-12 1.567070947 0.393995687 0.183854835 67.21787193 1.307021368 29.99441181 0.420211944 5.88E-13 12.23078916 1.567070947 VINAAHSFYNGTTTLPISDEDRT(ph)PR ddPTM_HeLa_A486_30min_R1 5 VINAAHSFYNGTTTLPISDEDRTPR 25 1 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 VINAAHSFYNGTTTLPIS(0.003)DEDRT(0.997)PR;VINAAHSFYNGTTTLPISDEDRT(1)PR;VINAAHSFYNGTTTLPISDEDRT(0.999)PR;VINAAHSFYNGT(0.004)T(0.004)T(0.001)LPIS(0.061)DEDRT(0.93)PR;VINAAHSFYNGT(0.001)T(0.002)T(0.001)LPIS(0.014)DEDRT(0.983)PR ;;;; 259.25 1.67E-61 3342470000 706468 910604 847221 222906.1 1072796 801279 924171 985421 873793 872987 TRUE FALSE FALSE 656948.2414 838444.4227 1175287.661 518936.6659 938235.9223 702425.3438 692933.6409 761062.1499 949534.0808 654385.373 1.003916451 1.281270116 1.796017621 0.793013853 1.433766647 1.073412354 1.058907594 1.163018278 1.451031945 1 19.31978098 -5.277063687 24.99673327 1.152023243 1.352488355 0.133510729 0.256719339 1769.416979 2830818.23 0.071221899 0.106037666 5.28E-06 5.277063687 0.200465111 VINQMLEFAFR ddPTM_HeLa_A485_30min_R1 2 VINQMLEFAFR 11 0 D6RIE8;Q16594;D6RHW1;D6RIY1;D6RGK3;D6RIV9;Q9HBM6 D6RIE8 TAF9;TAF9B Transcription initiation factor TFIID subunit 9;Transcription initiation factor TFIID subunit 9B 0 0 ; ; 96.015 0.022187 8046900 7787.6 8212.7 8918.6 8220.1 11504.4 7818.4 9433 8185.6 7084.3 11560.9 FALSE FALSE TRUE 9519.924753 9173.103824 12217.96127 8669.143249 10358.98154 8227.759334 7417.562489 6178.068765 8506.054029 8678.980393 1.096894373 1.05693335 1.40776459 0.998866555 1.193571258 0.9480099 0.854658284 0.711842692 0.980075267 1 13.08330985 -6.409485122 3.372899411 0.864784217 1.151819866 0.499705838 0.126023326 0.19911732 4.219071399 0.046764117 0.040003713 3.90E-07 6.409485122 0.287035649 VIPAKS(ph)PPPPTHSTQLGAPSR ddPTM_HeLa_A485_30min_R1 4 VIPAKSPPPPTHSTQLGAPSR 21 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 VIPAKS(1)PPPPTHSTQLGAPSR;VIPAKS(1)PPPPTHSTQLGAPSR;VIPAKS(0.999)PPPPT(0.001)HSTQLGAPSR;VIPAKS(0.999)PPPPT(0.001)HSTQLGAPSR ;;; 241.69 1.22E-46 5513680000 1306323 2036240 1867910 757122 2453060 1613960 2019280 2200800 1765050 1734830 TRUE FALSE FALSE 1596910.045 2274360.555 2558927.639 798481.6577 2208824.733 1698464.45 1587844.332 1661050.349 2119279.345 1302368.808 1.226158086 1.746326034 1.964825649 0.613099494 1.696005555 1.304134773 1.219197144 1.275407042 1.627249771 1 20.31270662 -5.198750678 24.99998564 1.27915754 1.655824996 0.226810341 0.333018603 347.013311 138386.3875 0.087046962 0.150769747 6.33E-06 5.198750678 0.376667456 VIPAKS(ph)PPPPTHSTQLGAPSR ddPTM_HeLa_A486_30min_R1 4 VIPAKSPPPPTHSTQLGAPSR 21 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 VIPAKS(1)PPPPTHSTQLGAPSR;VIPAKS(1)PPPPTHSTQLGAPSR;VIPAKS(0.998)PPPPT(0.002)HSTQLGAPSR;VIPAKS(1)PPPPTHSTQLGAPSR ;;; 253.21 6.21E-59 5753660000 1781780 1825380 1361660 105862.8 2052030 1335230 1687530 1493090 1476640 756657 TRUE FALSE FALSE 1656886.423 1680730.241 1888931.219 246453.9484 1794645.263 1170502.898 1265292.145 1153146.001 1604636.344 567185.1622 2.921244302 2.963283162 3.330360779 0.434521149 3.164125902 2.063705076 2.230827302 2.033103258 2.829122571 1 19.11346027 -6.320514814 0.078777359 1.26E-29 4.657559887 0.223196482 0.79888753 62.39267451 2.105672052 48.74209264 72.26118165 4.78E-07 6.320514814 4.657559887 VIPEDAS(ph)ESEEKLDQKEDGSK ddPTM_HeLa_A485_30min_R1 1 VIPEDASESEEKLDQKEDGSK 21 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 VIPEDAS(0.993)ES(0.007)EEKLDQKEDGSK 109.97 3.90E-05 129750000 90081 60270 34550 200300 62154 76343 130960 106510 57741 273160 TRUE FALSE FALSE 110119.2077 67318.05222 47331.48275 211241.8818 55965.72952 80340.20143 102979.3262 80388.2555 69329.08907 205066.2391 0.536993355 0.328274671 0.230810703 1.030115355 0.272915375 0.391776832 0.502175914 0.392011166 0.338081438 1 17.64573047 -10.39512641 3.388898703 1.00490739 0.447574836 0.374202125 0.214533237 175295350.7 249856994.7 8449695.327 0.054541533 4.03E-11 10.39512641 -0.557332554 VIPEDAS(ph)ESEEKLDQKEDGSK ddPTM_HeLa_A486_30min_R1 2 VIPEDASESEEKLDQKEDGSK 21 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 VIPEDAS(0.999)ES(0.001)EEKLDQKEDGSK;VIPEDAS(0.818)ES(0.182)EEKLDQKEDGSK ; 169.26 4.69E-14 737980000 415550 312401 81453 353120 197825 512750 734920 584310 228513 1156710 TRUE FALSE FALSE 386422.0909 287645.207 112993.783 822081.2057 173011.9439 449492.1183 551035.2428 451275.3684 248320.6908 867062.2871 0.445668202 0.331746878 0.130317954 0.948122434 0.19953808 0.518408106 0.63551979 0.520464764 0.28639314 1 19.72577611 -14 0.302012487 5.572220945 0.423725884 0.348376296 0.224541442 312.9391524 2.890451683 907.4237915 0.219748961 1.00E-14 14 -5.148495061 VIPELNGK ddPTM_HeLa_A485_30min_R1 4 VIPELNGK 8 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 187.34 4.09E-06 913720000 1918170 2218770 1830990 2067030 2502990 2392990 2890160 3261170 2041620 2627400 FALSE FALSE TRUE 2344860.299 2478235.851 2508349.395 2179946.615 2253783.527 2518283.256 2272653.706 2461362.944 2451354.407 1972437.534 1.188813465 1.256433123 1.271700296 1.105204387 1.142638734 1.276736633 1.152205668 1.247878781 1.242804583 1 20.91154818 -10.80275113 2.697416368 0.938642887 1.209001313 0.550358646 0.056775189 18972410.69 13185382.48 7599352.525 0.014315036 1.57E-11 10.80275113 0.270358426 VIPELNGK ddPTM_HeLa_A486_30min_R1 4 VIPELNGK 8 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 173.68 0.00022794 1449312000 1909890 2022410 1418120 906525 3567870 2040320 2251580 2306860 1748490 2156040 FALSE FALSE TRUE 1776016.574 1862146.866 1967254.043 2110436.013 3120354.476 1788606.063 1688210.869 1781638.336 1900050.521 1616153.551 1.098915739 1.152209124 1.217244514 1.3058388 1.930728967 1.106705525 1.044585688 1.102394222 1.175662127 1 20.62413284 -6.479624144 24.99980453 1.087256886 1.341376877 0.255156733 0.218187705 739.6961332 427521.6371 0.082359232 0.072628901 3.31E-07 6.479624144 0.25411999 VIPELNGKLT(ph)GMAFR ddPTM_HeLa_A485_30min_R1 1 VIPELNGKLTGMAFR 15 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIPELNGKLT(1)GMAFR 107.78 0.00032498 107990000 99449 96433 96410 111510 134580 125060 152220 150750 102890 155040 TRUE FALSE FALSE 121571.087 107710.0005 132076.071 117601.5089 121180.7427 131607.9482 119696.9535 113778.3261 123539.0792 116391.3813 1.044502485 0.925412168 1.134758171 1.010397055 1.041148763 1.1307362 1.028400489 0.97754941 1.061410887 1 16.82862471 -3.900146316 20.98427357 1.035951308 2.109718814 0.001896879 0.060872317 25154.56228 3625215.602 0.01446896 406813.2502 0.00012585 3.900146316 1.073767506 VIPELNGKLT(ph)GMAFR ddPTM_HeLa_A486_30min_R1 2 VIPELNGKLTGMAFR 15 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIPELNGKLT(1)GMAFR;VIPELNGKLT(1)GMAFR ; 174.2 2.08E-12 177491000 76717.5 86986.6 54568 37447.4 87381.2 83318.2 108409.8 104789.2 73877 116987.7 TRUE FALSE FALSE 71339.99942 80093.46502 75698.19098 87179.43969 76421.0351 73039.2476 81284.5214 80930.98669 80280.71784 87693.21846 0.81351786 0.913337045 0.86321602 0.99414118 0.871458893 0.83289505 0.926919126 0.922887632 0.915472362 1 16.42017766 -13.99999996 0.13332663 1.354768274 0.855041162 0.355165517 0.047090069 174.0943069 1.448482944 16.39662445 0.340761623 1.00E-14 13.99999996 -0.499727112 VIPQHQLSIS(ph)PDIR ddPTM_HeLa_A485_30min_R1 3 VIPQHQLSISPDIR 14 0 O60503 O60503 ADCY9 Adenylate cyclase type 9 1 0 VIPQHQLS(0.024)IS(0.976)PDIR;VIPQHQLSIS(1)PDIR;VIPQHQLS(0.248)IS(0.752)PDIR ;; 165.66 4.39E-12 474400000 332947 379144 262657 292039 254442 334626 354246 355660 309753 577710 TRUE FALSE FALSE 407009.9115 423481.5927 359824.7544 307992.3511 229108.8611 352146.4999 278558.4482 268433.8273 371917.5859 433697.529 0.938464908 0.97644456 0.829667522 0.710154729 0.528268772 0.811963353 0.642287377 0.618942487 0.857550622 1 18.7263297 -4.99514067 2.995015309 0.713684854 0.957084024 0.305564556 0.127327953 0.258631147 4.731810731 0.033753285 0.075448431 1.01E-05 4.99514067 0.24339917 VIPQHQLSIS(ph)PDIR ddPTM_HeLa_A486_30min_R1 1 VIPQHQLSISPDIR 14 0 O60503 O60503 ADCY9 Adenylate cyclase type 9 1 0 VIPQHQLS(0.011)IS(0.989)PDIR 177.64 2.71E-13 128110000 89438 98141 100860 20307 144370 99580 92216 83565 109430 119330 TRUE FALSE FALSE 83168.85806 90363.94974 139915.6931 47275.72226 126261.7684 87294.83206 69142.58144 64539.07371 118915.4805 89448.99129 0.929790899 1.010228829 1.564195315 0.528521581 1.4115505 0.975917456 0.772983356 0.721518183 1.329422264 1 16.44877759 -6.508537631 24.40670537 0.924442145 1.091163745 0.039951317 0.301562628 1512.171279 2573528.357 0.105178341 0.089248739 3.10E-07 6.508537631 0.1667216 VIPSQEHLNGPLPVPFT(ph)NGEIQKENSREALAEAALESPRPALVR ddPTM_HeLa_A485_30min_R1 1 VIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVR 44 3 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 VIPSQEHLNGPLPVPFT(0.482)NGEIQKENS(0.482)REALAEAALES(0.037)PRPALVR 68.256 0.00041668 256540000 16977 18494 16237 19240 36581 21263 49778 46914 19279 34894 TRUE FALSE FALSE 20753.47508 20656.71242 22243.74198 20291.03248 32938.8672 22376.2978 39142.52365 35408.26794 23148.11846 26195.56798 0.792251388 0.788557532 0.849141427 0.774597921 1.257421379 0.854201666 1.49424222 1.351689262 0.883665454 1 14.67703512 -5.754833651 24.99805768 1.161189663 0.803667341 0.433565177 0.188941713 145.9285914 552234.4655 0.056586242 0.071333325 1.76E-06 5.754833651 -0.357522322 VIPSQEHLNGPLPVPFTNGEIQKENS(ph)R ddPTM_HeLa_A485_30min_R1 1 VIPSQEHLNGPLPVPFTNGEIQKENSR 27 1 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 VIPSQEHLNGPLPVPFT(0.274)NGEIQKENS(0.726)R 114.63 0.0001528 269130000 229760 261730 164340 213460 213580 244630 291710 295530 171990 301210 TRUE FALSE FALSE 280869.3193 292337.0468 225136.2048 225120.7793 192315.2253 257438.4485 229383.7754 223050.8041 206506.8154 226123.8904 1.242103693 1.292818049 0.995632104 0.995563887 0.850486098 1.138484077 1.014416367 0.986409723 0.913246341 1 17.7867539 -4.765606221 24.62490976 0.988145532 1.267460932 0.718446815 0.07027976 40.17214888 237413.7838 0.018481049 0.040833284 1.72E-05 4.765606221 0.279315401 VIQLMPS(ph)PIMHPLILNPR ddPTM_HeLa_A485_30min_R1 4 VIQLMPSPIMHPLILNPR 18 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 VIQLMPS(1)PIMHPLILNPR;VIQLMPS(1)PIMHPLILNPR;VIQLMPS(1)PIMHPLILNPR;VIQLMPS(1)PIMHPLILNPR ;;; 229.86 4.90E-35 826836000 293046 407683 423064 285224 467065 406654 469771 501097 317048 433798 TRUE FALSE FALSE 358233.0717 455357.9805 579572.9788 300805.0649 420562.3686 427945.7746 369400.5882 378202.1751 380676.6255 325660.1421 1.100021235 1.398261321 1.779686562 0.923677865 1.291414927 1.314087048 1.13431317 1.161340079 1.168938339 1 18.31300763 -7.101561145 0.383048047 1.005664249 1.376249942 0.177281408 0.20732448 2.098205133 0.832198378 0.259308447 0.256388631 7.91E-08 7.101561145 0.370585693 VIQLMPS(ph)PIMHPLILNPR ddPTM_HeLa_A486_30min_R1 3 VIQLMPSPIMHPLILNPR 18 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 VIQLMPS(1)PIMHPLILNPR;VIQLMPS(1)PIMHPLILNPR;VIQLMPS(1)PIMHPLILNPR ;; 208.39 1.21E-25 844576000 347853 405937 363931 109210 469218 304278 390891 396281 347470 384108 TRUE FALSE FALSE 323470.301 373769.0737 504854.8296 254246.3992 410364.3032 266739.274 293085.9374 306056.4671 377588.9794 287924.8567 1.123453893 1.298147989 1.753425652 0.883030392 1.42524792 0.926419751 1.017925096 1.062973411 1.311415012 1 18.13533282 -5.283008822 24.9974741 1.096400055 1.382323179 0.294748777 0.213816944 1020.635605 1182842.896 0.059399674 0.088190568 5.21E-06 5.283008822 0.285923124 VIQNSTECTDAQQASLLPSVPALKGEIPS(ph)PQLTRPK ddPTM_HeLa_A486_30min_R1 1 VIQNSTECTDAQQASLLPSVPALKGEIPSPQLTRPK 36 2 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 VIQNSTECTDAQQASLLPS(0.037)VPALKGEIPS(0.934)PQLT(0.03)RPK 133.09 7.54E-07 241020000 69448 60581 37553 28443 77629 61824 93046 93863 47968 91949 TRUE FALSE FALSE 64580.05383 55780.34093 52094.5273 66216.74143 67892.04696 54196.78346 69764.90666 72492.44391 52125.90486 68924.37191 0.936969784 0.809297776 0.755821575 0.960715921 0.985022352 0.786322486 1.012195029 1.051767929 0.756276821 1 16.07272659 -5.280656079 24.47843715 0.937175397 0.831556509 0.181585808 0.09918362 999.2823882 1272894.23 0.027662808 0.041106613 5.24E-06 5.280656079 -0.105618889 VIQPMGMS(ph)PR ddPTM_HeLa_A485_30min_R1 6 VIQPMGMSPR 10 0 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 H0YE35 RIC8A Synembryn-A 1 0 VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR ;;;;; 157.03 1.56E-06 4700750000 3492320 3954700 3684750 2753670 5382660 2805480 3176970 2990150 2496660 2544820 TRUE FALSE FALSE 4269174.536 4417167.764 5047892.36 2904096.019 4846743.471 2952370.595 2498184.406 2256811.024 2997716.761 1910443.208 2.234651372 2.312116762 2.642262455 1.520116383 2.536973332 1.545385166 1.307646517 1.181302336 1.569121107 1 20.86547594 -6.428205873 4.232269686 1.292805064 2.231900512 0.697101107 0.309533081 0.134514958 4.218539488 0.111184568 0.095691562 3.73E-07 6.428205873 0.939095448 VIQPMGMS(ph)PR ddPTM_HeLa_A486_30min_R1 7 VIQPMGMSPR 10 0 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 H0YE35 RIC8A Synembryn-A 1 0 VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR;VIQPMGMS(1)PR ;;;;;; 146.5 4.98E-06 3908216000 2582054 2559550 2159180 733736 3044640 1897338 2210620 2171250 1696581 1830920 TRUE FALSE FALSE 2401065.348 2356721.936 2995272.321 1708174.489 2662752.861 1663263.728 1657499.494 1676903.773 1843642.007 1372445.715 1.749479285 1.717169511 2.182434095 1.244620804 1.940151681 1.211897644 1.207697672 1.221836139 1.343325996 1 20.38831766 -6.273862652 24.26760397 1.211487821 1.758099468 0.599715518 0.232560285 372.9330323 728484.4249 0.078780327 0.069989941 5.32E-07 6.273862652 0.546611647 VIQYLAYVASSHK ddPTM_HeLa_A485_30min_R1 6 VIQYLAYVASSHK 13 0 P35579;P35579-2;Q5BKV1 P35579 MYH9 Myosin-9 0 0 ;;;;; ;;;;; 196.58 7.62E-15 520585100 520296 791153 694043 366599.6 975166 662242 779881.9 875290 586988 713298.3 FALSE FALSE TRUE 636034.0502 883671.4612 950798.3872 386626.0079 878075.049 696915.9671 613253.761 660623.7551 704791.1074 535486.1611 1.187769351 1.65022278 1.775579756 0.722009336 1.639771693 1.301464011 1.145228029 1.233689688 1.316170536 1 19.03048977 -7.598878908 0.08668996 0.565502597 1.896359248 0.138471175 0.282979768 26.25788432 2.214923175 16.55744674 15.53876597 2.52E-08 7.598878908 1.330856651 VIQYLAYVASSHK ddPTM_HeLa_A486_30min_R1 4 VIQYLAYVASSHK 13 0 P35579;P35579-2;Q5BKV1 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 222.29 1.11E-21 372616000 622513 654437 536752 112793 984160 529744 682278 607864 588003 430652 FALSE FALSE TRUE 578878.0534 602577.0287 744596.7491 262587.8042 860717.4759 464389.5713 511564.828 469466.6368 638971.5735 322813.9361 1.793225101 1.866638832 2.306581798 0.813433916 2.666295905 1.438567296 1.584704905 1.454294825 1.979380386 1 18.30034334 -11.33940758 0.213716589 2.39E-12 1.906461336 0.188596178 0.479469827 65.88635934 1.821016786 33.27301578 1.036992392 4.58E-12 11.33940758 1.906461336 VIS(ph)DSESDIGGSDVEFKPDTK ddPTM_HeLa_A486_30min_R1 1 VISDSESDIGGSDVEFKPDTK 21 1 A0A087WWJ1;P52701-2;P52701;P52701-3;A0A494C0M1 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 VIS(0.998)DS(0.002)ESDIGGSDVEFKPDTK 103.02 8.19E-07 0 105930 82125 32809 37862 66225 107070 103120 103910 62950 155650 TRUE FALSE FALSE 98504.85402 75617.11591 45513.52346 88144.64944 57918.44298 93860.79201 77318.28531 80251.96134 68406.55668 116674.2269 0.84427261 0.648104709 0.390090637 0.75547661 0.496411629 0.804468943 0.662685217 0.687829382 0.586303921 1 16.83212638 -11.06517909 2.453074148 1.50697025 0.649176413 0.389838607 0.130219503 15839903.02 5541737.872 44940238 0.033199336 8.61E-12 11.06517909 -0.857793837 VIS(ph)HDRDSPPPPPPPPPPPQPQPSLK ddPTM_HeLa_A485_30min_R1 1 VISHDRDSPPPPPPPPPPPQPQPSLK 26 1 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLK 84.404 0.0033003 983980000 292190 335520 313250 309360 484390 305530 391460 401180 340950 456750 TRUE FALSE FALSE 357186.6575 374756.1454 429134.2104 326259.5535 436162.4308 321527.0784 307821.3731 302789.976 409375.5376 342890.6309 1.041692672 1.092932007 1.251519207 0.951497428 1.272016181 0.937695724 0.897724654 0.883051179 1.193895373 1 18.38738896 -6.301866624 24.97907732 0.969867259 1.118051279 0.253531689 0.118572291 688.2329854 425241.4938 0.040426135 0.035652922 4.99E-07 6.301866624 0.14818402 VIS(ph)HDRDSPPPPPPPPPPPQPQPSLK ddPTM_HeLa_A486_30min_R1 2 VISHDRDSPPPPPPPPPPPQPQPSLK 26 1 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.566)HDRDS(0.434)PPPPPPPPPPPQPQPSLK;VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLK ; 100.29 0.00093421 1277150000 458040 463120 331860 189240 459190 521750 553410 520430 426380 529820 TRUE FALSE FALSE 425933.7613 426420.6845 460365.0795 440560.2837 401594.1084 457381.7898 414940.9646 401939.4499 463338.9617 397149.6235 1.07247681 1.073702855 1.159172897 1.109305556 1.011190959 1.151661144 1.044797578 1.012060509 1.166660962 1 18.59932311 -14 0.266455345 0.42543296 1.093485684 0.176993556 0.055076962 363.6541476 3.55338598 114.9797734 0.069079526 1.00E-14 14 0.668052724 VIS(ph)HDRDSPPPPPPPPPPPQPQPSLKR ddPTM_HeLa_A485_30min_R1 3 VISHDRDSPPPPPPPPPPPQPQPSLKR 27 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLKR;VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLKR;VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLKR ;; 100.68 0.00052129 1050760000 507610 577190 527390 528060 685620 643440 788960 859030 583280 700310 TRUE FALSE FALSE 620526.0933 644687.3496 722493.5075 556906.5807 617357.2654 677129.5235 620392.2508 648351.5456 700338.9458 525735.6053 1.180300682 1.22625773 1.374252572 1.059290212 1.174273265 1.287965884 1.1800461 1.233227385 1.332112451 1 19.00397792 -10.31489664 4.167389586 0.999684714 1.225838 0.393391919 0.084736905 0.000247612 4.07E-05 0.081844115 0.019822625 4.84E-11 10.31489664 0.226153285 VIS(ph)HDRDSPPPPPPPPPPPQPQPSLKR ddPTM_HeLa_A486_30min_R1 1 VISHDRDSPPPPPPPPPPPQPQPSLKR 27 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.5)HDRDS(0.5)PPPPPPPPPPPQPQPSLKR 72.881 0.0035446 445200000 228470 228170 199680 88071 287740 211490 270050 274150 203270 266770 TRUE FALSE FALSE 212455.4328 210088.9782 277001.4436 205033.7389 251648.9661 185398.5141 202480.6337 211732.0297 220889.6073 199969.0556 1.062441547 1.050607443 1.385221542 1.025327335 1.258439539 0.927136019 1.012559834 1.058823972 1.104618945 1 17.60941724 -6.26296938 24.99997911 1.02380001 1.155959361 0.281056759 0.108520861 197.5174066 3227376.776 0.036917293 0.034214387 5.46E-07 6.26296938 0.132159352 VIS(ph)PSEDR ddPTM_HeLa_A485_30min_R1 2 VISPSEDR 8 0 P17252 P17252 PRKCA Protein kinase C alpha type 1 0 VIS(0.681)PS(0.319)EDR;VIS(0.651)PS(0.349)EDR ; 128.28 0.0005754 1411920000 1124980 1527240 1530860 1202640 1728520 1427230 1610520 1627080 1481100 1715600 TRUE FALSE FALSE 1375227.92 1705837.433 2097188.818 1268337.178 1556422.48 1501957.556 1266419.245 1228036.079 1778343.185 1287932.493 1.067779505 1.324477363 1.628337533 0.984785448 1.208465884 1.166177237 0.983296292 0.953494135 1.380773599 1 20.29662555 -5.294001875 24.99835556 1.097600473 1.338626316 0.286013731 0.176283006 814.650484 625408.6781 0.049683023 0.073697543 5.08E-06 5.294001875 0.241025844 VIS(ph)PSEDR ddPTM_HeLa_A486_30min_R1 2 VISPSEDR 8 0 P17252 P17252 PRKCA Protein kinase C alpha type 1 0 VIS(0.997)PS(0.003)EDR;VIS(0.841)PS(0.159)EDR ; 146.68 0.00030569 2129300000 2796700 3909300 3891800 885060 4520100 2884200 2836000 3222200 3563900 2580700 TRUE FALSE FALSE 2600665.772 3599512.831 5398809.186 2060464.408 3953146.91 2528376.728 2126402.804 2488575.4 3872821.722 1934475.922 1.344377432 1.860717308 2.79083814 1.065127968 2.043523449 1.307008632 1.09921389 1.286433897 2.002000478 1 20.88351134 -6.005912312 1.454463896 1.351357412 1.893945713 0.162919535 0.500014286 0.735072749 3.187919927 0.205999155 0.229413652 9.86E-07 6.005912312 0.542588301 VIS(ph)PSQK ddPTM_HeLa_A486_30min_R1 1 VISPSQK 7 0 E7EWD6;Q76L83;A0A5F9ZHC8 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 VIS(0.932)PS(0.068)QK 70.552 0.02068 262260000 308480 289230 221650 123200 323920 314190 349700 357180 256330 381640 TRUE FALSE FALSE 286857.145 266310.3614 307478.816 286815.8262 283290.9332 275428.4322 262201.3613 275857.9112 278548.8908 286074.8599 1.002734547 0.930911446 1.074819423 1.002590113 0.990268537 0.962784469 0.916548072 0.964285751 0.973692309 1 18.12603319 -6.176872272 3.30017128 0.958058899 1.002114581 0.192311574 0.037604045 0.402925146 8.470848149 0.013422686 0.013226363 6.65E-07 6.176872272 0.044055682 VISFIENTST(ph)PVDR ddPTM_HeLa_A485_30min_R1 1 VISFIENTSTPVDR 14 0 Q9NUY8-2;Q9NUY8;E9PGE5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 1 0 VIS(0.002)FIENT(0.047)S(0.166)T(0.785)PVDR 84.508 0.011944 46505000 77544 90280 100600 102410 133620 81746 112080 110460 82607 111100 TRUE FALSE FALSE 94793.39528 100837.4607 137816.1263 108004.399 120316.3236 86026.09416 88133.19239 83369.51181 99185.46718 83404.81464 1.136545842 1.209012466 1.652376148 1.294942018 1.442558492 1.031428396 1.056691904 0.999576729 1.189205535 1 16.34784305 -6.269210849 24.80067671 1.055436004 1.353479753 0.523692226 0.139031478 449.8620617 1435616.578 0.049935486 0.044862544 5.38E-07 6.269210849 0.298043749 VISFIENTST(ph)PVDR ddPTM_HeLa_A486_30min_R1 2 VISFIENTSTPVDR 14 0 Q9NUY8-2;Q9NUY8;E9PGE5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 1 0 VISFIENT(0.027)S(0.149)T(0.823)PVDR;VISFIENT(0.063)S(0.317)T(0.619)PVDR ; 124.62 0.0001463 85403000 184999 199765 200951 80185 256800 216915 228615 232670 185788 205380 TRUE FALSE FALSE 172031.5254 183934.8939 278764.6089 186674.7323 224589.7494 190154.2327 171413.109 179696.1202 201892.2534 153951.5112 1.117439667 1.194758612 1.810729928 1.212555375 1.458834328 1.235156649 1.113422711 1.167225438 1.31140157 1 17.2321165 -6.475748655 5.556586168 1.16293548 1.366070894 0.208989602 0.192932441 0.352080893 26.12782056 0.07099014 0.060872966 3.34E-07 6.475748655 0.203135414 VISGTTLGYLS(ph)PK ddPTM_HeLa_A485_30min_R1 2 VISGTTLGYLSPK 13 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJ67;E5RJN7 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 VISGTTLGYLS(1)PK;VISGTTLGYLS(1)PK ; 237.05 7.77E-35 257800000 261200 218570 172211 450060 345490 225320 349130 288110 196058 535160 TRUE FALSE FALSE 319303.0389 244129.8602 235919.0152 474645.6382 311091.8025 237117.4068 274535.5234 217450.5708 235405.0422 401754.4609 0.794771608 0.607659364 0.587221893 1.181432154 0.774333163 0.590204789 0.683341568 0.541252411 0.585942572 1 18.61595452 -6.182211469 7.607485075 0.651888363 0.790279435 0.065052584 0.192437728 0.731048771 62.62369993 0.064951805 0.064957814 6.57E-07 6.182211469 0.138391071 VISGTTLGYLS(ph)PK ddPTM_HeLa_A486_30min_R1 2 VISGTTLGYLSPK 13 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJ67;E5RJN7 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 VISGTTLGYLS(1)PK;VISGTTLGYLS(1)PK ; 206.43 1.15E-21 346470000 448060 544310 291620 325950 474560 559570 688890 662690 435360 808370 TRUE FALSE FALSE 416653.3078 501176.8933 404543.0739 758828.0726 415036.2597 490535.9427 516522.4357 511809.9534 473097.3553 605948.8904 0.687604705 0.827094333 0.667619135 1.252297157 0.684936083 0.809533527 0.852419146 0.844642117 0.780754553 1 19.20883659 VISGVLQLGNIVFK ddPTM_HeLa_A485_30min_R1 1 VISGVLQLGNIVFK 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 296.14 1.70E-82 0 209800 164210 178860 231740 274050 156130 220190 174410 145630 328630 FALSE FALSE TRUE 256469.2862 183412.9311 245027.757 244399.3694 246764.6198 164304.7254 173144.6077 131635.674 174856.6052 246708.589 1.03956367 0.743439585 0.993186974 0.99063989 1.000227113 0.66598705 0.701818321 0.533567455 0.708757672 1 17.91244842 -6.265363058 24.97230617 0.69161107 0.946024345 0.419991954 0.133446357 299.6512128 1907127.613 0.044576108 0.040778146 5.43E-07 6.265363058 0.254413275 VISGVLQLGNIVFKK ddPTM_HeLa_A485_30min_R1 2 VISGVLQLGNIVFKK 15 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 268.01 2.19E-52 601280000 784830 959470 642780 568430 1103450 884460 1372750 1627780 473170 881420 FALSE FALSE TRUE 959412.7259 1071671.67 880571.0703 599481.8916 993586.6436 930768.958 1079450.748 1228564.403 568130.8788 661698.2153 1.449924911 1.619577695 1.330774438 0.905974775 1.501570687 1.406636646 1.631333927 1.856683869 0.858595151 1 19.33581386 -7.788070678 24.99982078 0.929296651 1.450110043 0.451484455 0.234888088 252.9178628 237416.7928 0.241971072 0.062549946 1.63E-08 7.788070678 0.520813392 VISGVLQLGNIVFKK ddPTM_HeLa_A486_30min_R1 2 VISGVLQLGNIVFKK 15 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 290.39 6.03E-66 359590000 1014690 698480 472460 380870 807550 679890 1136460 916780 559660 1107490 FALSE FALSE TRUE 943565.4709 643129.901 655409.1649 886684.6081 706259.5489 596012.0844 852105.6878 708049.2072 608171.7794 830167.2954 1.136596775 0.774699153 0.789490466 1.068079426 0.850743643 0.71794214 1.026426471 0.852899423 0.732589422 1 19.66304257 -4.248639066 24.21103878 0.867006002 1.136597043 0.318492424 0.117819076 1657.028207 3134086.794 0.028952547 0.497607858 5.64E-05 4.248639066 0.269591041 VISHDRDS(ph)PPPPPPPPPPPQPQPSLK ddPTM_HeLa_A486_30min_R1 2 VISHDRDSPPPPPPPPPPPQPQPSLK 26 1 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.197)HDRDS(0.803)PPPPPPPPPPPQPQPSLK;VIS(0.37)HDRDS(0.63)PPPPPPPPPPPQPQPSLK ; 101.45 0.00077315 958840000 473900 491300 327650 204298 499040 515970 626870 578580 423820 615230 TRUE FALSE FALSE 440682.0572 452367.5987 454524.8548 475616.0686 436445.7498 452314.8674 470020.4956 446849.9643 460557.0588 461172.4035 0.95556901 0.98090778 0.985585545 1.031319448 0.946383059 0.980793439 1.019186083 0.968943417 0.998665695 1 18.81494666 -4.303228656 2.279137993 0.99057015 0.948857081 0.185218691 0.022738718 0.962215562 6.322105623 0.005936909 0.077546256 4.97E-05 4.303228656 -0.041713069 VISHDRDS(ph)PPPPPPPPPPPQPQPSLKR ddPTM_HeLa_A485_30min_R1 1 VISHDRDSPPPPPPPPPPPQPQPSLKR 27 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.009)HDRDS(0.991)PPPPPPPPPPPQPQPSLKR 113.33 0.00013209 351050000 69438 93023 86478 72144 117540 112870 125310 151100 87551 95360 TRUE FALSE FALSE 84884.24354 103901.2307 118469.8108 76085.04404 105837.3049 118779.6987 98536.49481 114042.4881 105121.6826 71588.50697 1.185724457 1.451367476 1.654871932 1.062810879 1.47841196 1.659200669 1.376428969 1.593027888 1.468415631 1 16.12744037 -10.00024063 5.435202742 0.999998375 1.443144099 0.340777591 0.182014698 3.56E-06 6.56E-07 0.174551722 0.042334855 9.99E-11 10.00024063 0.443145724 VISHDRDS(ph)PPPPPPPPPPPQPQPSLKR ddPTM_HeLa_A486_30min_R1 1 VISHDRDSPPPPPPPPPPPQPQPSLKR 27 2 Q69YN4-3;Q69YN4;Q69YN4-2;Q69YN4-4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.008)HDRDS(0.992)PPPPPPPPPPPQPQPSLKR 115.13 0.00010812 174730000 48547 46004 37245 18035 56476 49364 62822 54346 44404 60645 TRUE FALSE FALSE 45144.106 42358.4755 51667.26146 41986.39144 49392.25346 43273.97158 47103.27114 41972.60216 48252.97447 45459.09727 0.993070886 0.931793151 1.136565936 0.923608122 1.086520772 0.951932048 1.036168203 0.923304788 1.061459144 1 15.47228141 VISRPPPSVS(ph)PPK ddPTM_HeLa_A485_30min_R1 4 VISRPPPSVSPPK 13 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 VISRPPPS(0.016)VS(0.984)PPK;VISRPPPS(0.081)VS(0.919)PPK;VIS(0.001)RPPPS(0.471)VS(0.528)PPK;VIS(0.005)RPPPS(0.175)VS(0.82)PPK ;;; 86.488 0.00092692 1440288000 673871 710454 536605 1123970 832370 734689 1111040 1068650 644513 1528730 TRUE FALSE FALSE 823771.2791 793535.4152 735117.5195 1185369.635 749496.3202 773156.18 873657.2276 806561.9119 773860.8473 1147645.745 0.7177923 0.69144631 0.640543933 1.032870675 0.653072887 0.673688883 0.761260373 0.702796935 0.674302894 1 20.13024595 -10.11162221 4.563723587 1.000022033 0.729382516 0.366874043 0.107355736 145032880.6 1.865801634 36395.25453 0.025918585 7.73E-11 10.11162221 -0.270639517 VISRPPPSVS(ph)PPK ddPTM_HeLa_A486_30min_R1 3 VISRPPPSVSPPK 13 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 VISRPPPS(0.092)VS(0.908)PPK;VISRPPPS(0.286)VS(0.714)PPK;VISRPPPS(0.055)VS(0.945)PPK ;; 104.21 0.00022611 1227798000 1099000 1024240 521700 596318 879470 1064170 1409390 1313440 808190 1826670 TRUE FALSE FALSE 1021965.775 943075.4922 723716.2116 1388258.44 769158.6719 932883.5251 1056745.715 1014398.384 878244.5599 1369259.942 0.746363597 0.688748325 0.528545522 1.013875012 0.561733129 0.681304912 0.771764135 0.740836968 0.6414009 1 20.38496493 -10.47791896 2.920816579 1.008646475 0.709133103 0.324662492 0.126213213 29765059.79 33499238.16 2087987.508 0.030502629 3.33E-11 10.47791896 -0.299513372 VIVGSLS(ph)VQDLQASQSACYWLK ddPTM_HeLa_A485_30min_R1 2 VIVGSLSVQDLQASQSACYWLK 22 0 E5RFT1;Q15043-2;Q15043-3;Q15043 E5RFT1 SLC39A14 Zinc transporter ZIP14 1 0 VIVGS(0.027)LS(0.973)VQDLQASQSACYWLK;VIVGS(0.141)LS(0.85)VQDLQAS(0.007)QS(0.001)ACYWLK ; 172.74 2.52E-14 68258000 44419 35845 22972 40900 28480 41959 47336 55184 31985 85893 TRUE FALSE FALSE 54299.85331 40036.76094 31470.29874 43134.26344 25644.4312 44155.90836 37222.2769 41650.03747 38404.09612 64481.45584 0.8421003 0.620903489 0.488051926 0.668940595 0.397702423 0.684784606 0.577255529 0.645922722 0.595583577 1 15.9765967 -10.17029891 0.850343271 1.077567789 0.6062439 0.515382898 0.112233403 92.10520893 27.26454821 18.01941503 0.035883625 6.76E-11 10.17029891 -0.471323889 VIY(ph)DFIEK ddPTM_HeLa_A485_30min_R1 6 VIYDFIEK 8 0 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK ;;;;; 157.86 7.08E-05 824515000 515549 534317 480156 722992 731038 642025 849891 823155 514334 934723 TRUE FALSE FALSE 630231.0964 596800.7252 657785.6854 762487.2222 658253.2899 675640.4362 668304.8449 621274.9456 617556.116 701713.7584 0.898131309 0.850490272 0.937398872 1.0866072 0.938065247 0.962843365 0.952389542 0.885368055 0.880068416 1 19.42052312 -4.87927749 5.996925545 0.956530053 0.87539667 0.256134667 0.0559703 0.291553638 14.00322878 0.015720207 0.0335947 1.32E-05 4.87927749 -0.081133383 VIY(ph)DFIEK ddPTM_HeLa_A486_30min_R1 5 VIYDFIEK 8 0 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK;VIY(1)DFIEK ;;;; 157.86 7.08E-05 956344000 841463 905484 629721 393347 1039270 889388 1231366 1108466 875029 1177957 TRUE FALSE FALSE 782480.789 833730.1501 873565.8357 915731.6947 908915.0658 779664.3512 923265.2027 856092.4894 950877.2183 882988.9 0.886172849 0.944213625 0.989328219 1.037081774 1.029361825 0.882983185 1.0456136 0.969539356 1.076884679 1 19.75203578 -4.510544741 2.105459902 1.002721788 0.880793652 0.366648671 0.049766862 0.469002361 3.327608653 0.01333429 0.089243367 3.09E-05 4.510544741 -0.121928136 VKAEGPGLSR ddPTM_HeLa_A485_30min_R1 1 VKAEGPGLSR 10 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 77.062 0.032308 16417000 16870 21217 20160 21144 36159 32983 50190 55130 41110 61495 FALSE FALSE TRUE 20622.6733 23698.14359 27618.02293 22299.04318 32558.883 34709.93888 39466.49649 41609.28106 49360.39992 46165.42823 0.446712488 0.51333096 0.598240371 0.483024723 0.705265482 0.75186 0.854892893 0.901308244 1.069207019 1 15.49452525 -6.513670505 0.685324191 1.036134168 0.480210735 0.93524892 0.053345747 0.164255841 0.161573008 0.042403337 0.034347656 3.06E-07 6.513670505 -0.555923432 down VKAFGPGLQGGSAGS(ph)PAR ddPTM_HeLa_A485_30min_R1 2 VKAFGPGLQGGSAGSPAR 18 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 VKAFGPGLQGGSAGS(1)PAR;VKAFGPGLQGGSAGS(1)PAR ; 171.32 1.14E-12 3241000000 1044710 2684600 1402810 570750 2134500 2816300 2913300 5589900 1306660 874840 TRUE FALSE FALSE 1277102.135 2998540.617 1921767.795 601928.6273 1921981.685 2963757.113 2290849.656 4218968.26 1568894.677 656758.4882 1.94455368 4.565667092 2.92614078 0.916514424 2.926466456 4.512704695 3.488115794 6.423926506 2.388845679 1 19.32500342 -6.099945645 6.806059112 3.888871907 2.654726516 0.060252546 1.575721783 0.558629721 32.75012575 0.5101527 0.51169052 7.94E-07 6.099945645 -1.234145391 VKAFGPGLQGGSAGS(ph)PAR ddPTM_HeLa_A486_30min_R1 2 VKAFGPGLQGGSAGSPAR 18 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 VKAFGPGLQGGSAGS(1)PAR;VKAFGPGLQGGS(0.001)AGS(0.999)PAR ; 187.18 3.01E-18 1321540000 1784050 951530 885930 504890 1779540 828790 1379640 1553620 643890 1631200 TRUE FALSE FALSE 1658997.308 876127.2974 1228985.822 1175409.436 1556333.5 726542.3163 1034439.48 1199894.641 699702.9036 1222736.903 1.356790086 0.716529693 1.0051106 0.961293826 1.272827782 0.594193497 0.84600332 0.981318744 0.572243221 1 20.22168258 -6.266227517 24.97493721 0.800537414 1.034477224 0.279928944 0.209101861 607.2046868 3167170.656 0.070062465 0.063764163 5.42E-07 6.266227517 0.233939811 VKAPVHFVEPLS(ph)PTGVAGHR ddPTM_HeLa_A485_30min_R1 2 VKAPVHFVEPLSPTGVAGHR 20 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 VKAPVHFVEPLS(1)PTGVAGHR;VKAPVHFVEPLS(1)PTGVAGHR ; 264.97 3.30E-59 3539800000 1333440 1803550 1359840 1042240 1676400 1716700 1843110 2283420 1309940 1369370 TRUE FALSE FALSE 1630059.128 2014459.484 1862901.404 1099174.932 1509491.73 1806583.757 1449314.492 1723407.665 1572832.943 1028011.26 1.585643261 1.959569473 1.812141049 1.069224603 1.468361085 1.757357946 1.409823557 1.676448237 1.529976376 1 19.97142464 -11.8866439 0.232988592 6.89E-18 1.667260861 0.369899233 0.231661969 64.6799776 1.558039332 33.14364564 0.444930329 1.30E-12 11.8866439 1.667260861 VKAPVHFVEPLS(ph)PTGVAGHR ddPTM_HeLa_A486_30min_R1 2 VKAPVHFVEPLSPTGVAGHR 20 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 VKAPVHFVEPLS(1)PTGVAGHR;VKAPVHFVEPLS(0.999)PT(0.001)GVAGHR ; 252.84 9.97E-59 3527500000 3305900 2710500 1935740 791080 2745300 2066700 2775000 2794200 2232900 2926800 TRUE FALSE FALSE 3074173.482 2495710.109 2685310.369 1841674.219 2400958.875 1811731.567 2080665.649 2158021.657 2426449.57 2193910.23 1.401230296 1.137562547 1.223983704 0.839448303 1.094374256 0.825800227 0.948382309 0.983641731 1.105993097 1 21.06507306 -4.478196888 1.059964431 0.969433854 1.492176338 0.605057987 0.104757444 0.842079603 1.006043474 0.033348471 0.458433561 3.33E-05 4.478196888 0.522742484 VKAQT(ph)PPGPSLS(ph)GSKSPCPQEK ddPTM_HeLa_A485_30min_R1 1 VKAQTPPGPSLSGSKSPCPQEK 22 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 VKAQT(0.94)PPGPS(0.206)LS(0.285)GS(0.285)KS(0.285)PCPQEK 44.238 0.0079623 0 141370 118750 63289 237610 169470 187240 327080 371460 105440 317590 TRUE FALSE FALSE 172817.2688 132636.7795 86702.23478 250590.0326 152596.9718 197043.5969 257196.686 280358.8526 126600.8408 238420.6578 0.724841842 0.556314124 0.36365236 1.051041613 0.640032509 0.826453541 1.078751684 1.175900004 0.530997784 1 17.86314972 -5.586056967 1.186564006 0.931667565 0.564301009 0.272354096 0.221758892 0.622718691 1.812337396 0.087034739 0.154999505 2.59E-06 5.586056967 -0.367366556 VKAQT(ph)PPGPSLSGSK ddPTM_HeLa_A485_30min_R1 2 VKAQTPPGPSLSGSK 15 1 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKAQT(0.955)PPGPS(0.045)LSGSK;VKAQT(0.999)PPGPS(0.001)LSGSK ; 87.793 0.0015885 2592800000 3099200 2675800 1702020 3624300 3501000 3533600 5374300 5519300 2642000 5101000 TRUE FALSE FALSE 3788606.348 2988711.534 2331668.025 3822286.332 3152428.147 3718613.832 4226036.901 4165683.021 3172225.166 3829414.577 0.989343481 0.780461732 0.608883676 0.998138555 0.823214119 0.971065879 1.103572574 1.087811972 0.828383844 1 21.86869243 -6.152326502 1.679585689 1.01431247 0.817431193 0.275778915 0.125014364 0.462560708 2.597562107 0.052170456 0.051506886 7.04E-07 6.152326502 -0.196881277 VKAQT(ph)PPGPSLSGSK ddPTM_HeLa_A486_30min_R1 2 VKAQTPPGPSLSGSK 15 1 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKAQT(1)PPGPSLSGSK;VKAQT(0.999)PPGPS(0.001)LSGSK ; 88.574 0.0015322 3831900000 4473700 3413300 1326550 1659890 2843700 3767400 4734800 4709100 2268780 5871600 TRUE FALSE FALSE 4160116.732 3142817.677 1840225.686 3864307.806 2487016.63 3302616.492 3550102.96 3636940.729 2465439.677 4401313.142 0.945198989 0.714063639 0.41810833 0.877989746 0.565062414 0.750370716 0.806600859 0.826330827 0.560160024 1 22.06950259 -6.513045085 23.80027723 0.783041285 0.694343217 0.059594664 0.170070273 845.3550591 2046017.93 0.061228324 0.050350443 3.07E-07 6.513045085 -0.088698068 VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFS(ph)PGK ddPTM_HeLa_A485_30min_R1 1 VKASPITNDGEDEFVPSDGLDKDEYTFSPGK 31 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 VKAS(1)PITNDGEDEFVPSDGLDKDEYT(0.01)FS(0.99)PGK 227.62 2.34E-39 643640000 103110 54068 35250 205100 83127 103840 191360 166990 73405 322660 TRUE FALSE FALSE 126046.4638 60390.78227 48290.44187 216304.0937 74850.584 109276.9018 150474.3727 126035.4407 88136.71019 242226.8001 0.520365474 0.249315031 0.199360442 0.892981675 0.309010332 0.451134646 0.621212734 0.520319967 0.363860275 1 17.88599897 -14 0.248487712 4.213507048 0.411346857 0.413847118 0.192005981 181.809884 1.806457354 296.8017671 0.283806889 1.00E-14 14 -3.80216019 VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK ddPTM_HeLa_A486_30min_R1 1 VKASPITNDGEDEFVPSDGLDKDEYTFSPGK 31 2 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 VKAS(0.991)PIT(0.009)NDGEDEFVPSDGLDKDEYTFSPGK 155.7 2.32E-10 1065500000 129950 106860 49619 72807 82098 163200 194680 185960 114670 268490 TRUE FALSE FALSE 120841.1761 98392.02442 68832.80564 169498.3755 71800.50331 143066.0433 145969.0049 143620.9675 124609.6879 201258.3564 0.600428117 0.488884169 0.342012162 0.842192983 0.356757874 0.710857655 0.72528171 0.713614928 0.619152865 1 17.61868916 -14 0.102384367 2.349775149 0.325405045 0.459120432 0.14375164 156.8079888 1.08465818 44.42952489 2.188650432 1.00E-14 14 -2.024370105 VKEEASS(ph)PLK ddPTM_HeLa_A486_30min_R1 4 VKEEASSPLK 10 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2;D6RA28 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 VKEEAS(0.149)S(0.851)PLK;VKEEAS(0.093)S(0.907)PLK;VKEEAS(0.144)S(0.856)PLK;VKEEAS(0.015)S(0.985)PLK ;;; 140.82 5.15E-06 2458270000 3071330 3027040 1177610 1746590 2477650 3898700 4664750 4141530 2630720 5532400 TRUE FALSE FALSE 2856045.627 2787166.326 1633612.129 4066149.788 2166880.034 3417718.033 3497580.211 3198594.028 2858752.928 4147051.03 0.688693148 0.672083923 0.393921396 0.980491862 0.522511061 0.824132138 0.843389721 0.771293626 0.689345973 1 21.98365437 -13.9999984 0.074033975 1.988149773 0.380554986 0.287005957 0.151295687 359.6624728 1.900882203 59.35804211 6.566865089 1.00E-14 13.9999984 -1.607594788 VKEEHLDVASPDKAS(ph)SPELPVSVENIKQETDD ddPTM_HeLa_A485_30min_R1 1 VKEEHLDVASPDKASSPELPVSVENIKQETDD 32 3 Q969R5 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 VKEEHLDVAS(0.094)PDKAS(0.453)S(0.453)PELPVSVENIKQETDD 109.41 9.12E-05 77609000 65865 51265 24831 121810 97255 83467 188860 184030 62281 169160 TRUE FALSE FALSE 80516.44202 57259.9958 34017.0202 128464.1719 87571.95072 87837.20306 148508.5182 138896.354 74780.22542 126991.5252 0.634030042 0.450896197 0.267868428 1.011596417 0.689588936 0.691677676 1.169436448 1.093745065 0.588859968 1 16.9543727 -5.266391625 24.99367323 0.890798408 0.450928015 0.51582555 0.195878031 338.099793 1706369.323 0.056693026 0.087147509 5.42E-06 5.266391625 -0.439870393 VKEEPPS(ph)PPQS(ph)PR ddPTM_HeLa_A485_30min_R1 4 VKEEPPSPPQSPR 13 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR ;;; 92.39 0.0015731 8288970000 4067430 3977730 3258420 4544980 4731830 4635440 5966740 6203400 3581380 5801670 TRUE FALSE FALSE 4972215.771 4442890.922 4463845.152 4793260.749 4260712.391 4878144.471 4691897.255 4682006.423 4300130.116 4355420.441 1.141615566 1.020083131 1.024894201 1.100527679 0.97825513 1.120016893 1.077254726 1.074983802 0.987305399 1 22.05438056 -7.763489508 24.99181928 0.993652664 1.064464174 0.284086953 0.04654172 70.82064008 863224.0139 0.036735448 0.01130898 1.72E-08 7.763489508 0.070811511 VKEEPPS(ph)PPQS(ph)PR ddPTM_HeLa_A486_30min_R1 3 VKEEPPSPPQSPR 13 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR;VKEEPPS(1)PPQS(1)PR ;; 74.364 0.0093939 8304200000 4093000 4091400 2365660 1540010 3886270 4219300 4768200 4730500 3326340 5335500 TRUE FALSE FALSE 3806101.836 3767182.563 3281706.907 3585221.108 3398817.779 3698765.665 3575145.927 3653468.416 3614669.829 3999456.072 0.951654867 0.941923726 0.820538305 0.896427175 0.849820005 0.924817175 0.893908037 0.913491322 0.903790357 1 21.93137238 -9.063152233 0.697539343 1.004596469 0.894700948 0.393625074 0.037500271 5.94342501 3.006645191 0.114946998 0.014268443 8.65E-10 9.063152233 -0.109895521 VKEEPPS(ph)PPQSPR ddPTM_HeLa_A485_30min_R1 5 VKEEPPSPPQSPR 13 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 VKEEPPS(0.979)PPQS(0.021)PR;VKEEPPS(0.999)PPQS(0.001)PR;VKEEPPS(1)PPQSPR;VKEEPPS(1)PPQSPR;VKEEPPS(0.985)PPQS(0.015)PR ;;;; 104.82 0.00021349 5522360000 4178640 4637820 3753530 5075750 5779700 5653940 7317680 8320710 4946640 7422350 TRUE FALSE FALSE 5108164.052 5180172.705 5142116.944 5353025.37 5204252.774 5949971.556 5754197.888 6280042.826 5939385.275 5572094.743 0.916740344 0.929663429 0.922833724 0.960684557 0.933984976 1.067815935 1.032681272 1.127052413 1.06591606 1 22.40978836 -6.260572249 24.28779434 1.065008176 0.933605705 0.793227814 0.032060431 22.28704242 624250.6544 0.010730792 0.010144253 5.49E-07 6.260572249 -0.131402472 VKEEPPS(ph)PPQSPR ddPTM_HeLa_A486_30min_R1 3 VKEEPPSPPQSPR 13 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 VKEEPPS(1)PPQSPR;VKEEPPS(0.999)PPQS(0.001)PR;VKEEPPS(1)PPQSPR ;; 116.06 9.15E-05 3564600000 3908990 3808210 2369690 1582690 3994170 4045470 4709140 4429060 3152820 4879550 TRUE FALSE FALSE 3634989.987 3506433.57 3287297.43 3684582.305 3493183.954 3546381.043 3530863.364 3420659.724 3426108.976 3657678.919 0.993796904 0.958649911 0.898738654 1.007355316 0.9550275 0.969571447 0.965328954 0.935199562 0.936689374 1 21.80249701 -2.998324322 2.34035216 0.95690467 9.512078763 0.107806357 0.02987151 884.6199924 25.10762326 0.00768987 40116.03959 0.001003866 2.998324322 8.555174093 VKEGMNIVEAMER ddPTM_HeLa_A485_30min_R1 4 VKEGMNIVEAMER 13 1 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 0 ;;; ;;; 190.44 6.36E-12 2950374000 1016810 1341402 1109622 1021453 1459623 1503560 1714187 2147860 1074061 1382843 FALSE FALSE TRUE 1242995.877 1498267.295 1520117.353 1077252.391 1314297.809 1582284.077 1347936.944 1621093.967 1289615.191 1038125.689 1.197346226 1.443242673 1.464290277 1.037689754 1.266029559 1.524173896 1.29843328 1.561558474 1.242253423 1 19.9855497 -8.01434785 24.3840786 0.999999983 1.350498873 0.330928886 0.150801271 683.3125481 1161286.262 0.147113999 0.037984671 9.68E-09 8.01434785 0.350498889 VKEGMNIVEAMER ddPTM_HeLa_A486_30min_R1 3 VKEGMNIVEAMER 13 1 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 0 ;; ;; 179.79 6.14E-17 1542677000 1399612 1321313 1041680 611893 1721052 1389267 1616144 1624483 1188012 1756809 FALSE FALSE TRUE 1301506.426 1216607.346 1445046.393 1424517.827 1505181.61 1217873.363 1211767.677 1254623.683 1290989.837 1316892.591 0.98831631 0.923847058 1.097315303 1.081726662 1.142979784 0.924808424 0.920171991 0.952715272 0.980330397 1 20.32870625 -6.2968798 24.99699549 0.950435333 1.044746955 0.361295766 0.060423514 735.1567685 518521.7675 0.023331385 0.020577515 5.05E-07 6.2968798 0.094311622 VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(ph)SPQRDDLK ddPTM_HeLa_A485_30min_R1 1 VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLK 44 3 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.5)S(0.5)PQRDDLK 171.86 1.23E-16 861530000 237980 206270 148030 297930 266620 267420 412040 446540 188170 375050 TRUE FALSE FALSE 290917.83 230391.4822 202792.457 314205.1615 240074.3766 281421.6977 324004.2879 337025.3649 225933.993 281556.9373 1.033246891 0.818276702 0.720253811 1.115956028 0.85266724 0.999519672 1.150759385 1.197006077 0.80244513 1 18.10306717 -5.998224518 1.265676998 1.049138422 0.880807519 0.131286217 0.143941991 0.77442944 2.584517232 0.063676366 0.072547964 1.00E-06 5.998224518 -0.168330903 VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(ph)SPQRDDLK ddPTM_HeLa_A486_30min_R1 3 VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLK 44 3 O00139-1;O00139-5;O00139;O00139-4;H0Y8H2;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.538)S(0.462)PQRDDLK;VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.5)S(0.5)PQRDDLK;VKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGS(0.5)S(0.5)PQRDDLK ;; 188.03 5.14E-23 1743040000 833280 661790 357422 368476 700670 823970 1045390 1024530 537224 1215970 TRUE FALSE FALSE 774871.3751 609347.3502 495825.3705 857830.7497 612785.4351 722316.9589 783822.365 791266.8843 583791.0089 911483.1974 0.850121404 0.668522856 0.543976424 0.941137206 0.672294823 0.792463274 0.85994165 0.868109129 0.640484663 1 19.79785654 -14 0.167270211 1.899626859 0.703211955 0.253680409 0.119908707 182.5554781 1.70953902 54.70303881 0.449816351 1.00E-14 14 -1.196414904 VKEPS(ph)VQEATSTSDILK ddPTM_HeLa_A485_30min_R1 2 VKEPSVQEATSTSDILK 17 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VKEPS(0.995)VQEAT(0.004)S(0.001)TSDILK;VKEPS(0.999)VQEAT(0.001)STSDILK ; 121.46 1.82E-05 294040000 287320 159067 116368 486570 285490 242270 335850 296330 191868 617270 TRUE FALSE FALSE 351233.3428 177668.502 159417.3657 513150.087 257065.6132 254954.8826 264092.9039 223654.6029 230374.1477 463395.949 0.757955143 0.383405384 0.344019765 1.107368522 0.554742901 0.550187983 0.569907666 0.482642551 0.497143206 1 18.82188591 -9.997924561 4.348845104 1.000017769 0.580423357 0.270376465 0.205444006 96005583.27 161244968.2 24394.93738 0.051887052 1.00E-10 9.997924561 -0.419594412 VKEPS(ph)VQEATSTSDILK ddPTM_HeLa_A486_30min_R1 1 VKEPSVQEATSTSDILK 17 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VKEPS(0.998)VQEAT(0.001)S(0.001)T(0.001)SDILK 121.25 1.94E-05 198720000 44891 37997 22599 28727 34299 42157 58260 51026 33217 82258 TRUE FALSE FALSE 41744.37272 34985.97934 31349.93802 66877.90778 29996.89959 36956.09796 43682.73179 39408.49369 36096.27631 61660.06139 0.67700829 0.567400981 0.508431833 1.084622789 0.486488319 0.599352273 0.708444507 0.639125113 0.585407726 1 15.91204871 -10.57781954 2.672745016 1.025891126 0.651844447 0.302222858 0.159218548 20234815.75 19332298.95 3712545.28 0.040990884 2.64E-11 10.57781954 -0.374046679 VKEPSVQEAT(ph)STSDILK ddPTM_HeLa_A486_30min_R1 1 VKEPSVQEATSTSDILK 17 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VKEPS(0.485)VQEAT(0.513)S(0.001)TSDILK 145.9 8.38E-08 211310000 282410 265010 106190 154280 197080 354980 412560 341860 211330 532830 TRUE FALSE FALSE 262614.5174 244009.6425 147309.6119 359171.6369 172360.3887 311186.1768 309333.1244 264025.9408 229648.2546 399405.8999 0.657512865 0.610931492 0.368821822 0.899264725 0.43154192 0.779122634 0.774483112 0.661046672 0.574974618 1 18.60749612 -14 0.202799979 2.627930166 0.586386849 0.338485895 0.150912453 162.2886998 1.609646848 107.3746881 0.340764724 1.00E-14 14 -2.041543317 VKESSIIAPAPAEDVDT(ph)PPR ddPTM_HeLa_A485_30min_R1 2 VKESSIIAPAPAEDVDTPPR 20 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR ; 86.577 0.00088832 2931100000 789680 842590 757310 717110 1053490 926710 1207730 1308560 823440 1097610 TRUE FALSE FALSE 965341.5916 941123.5709 1037470.483 756283.9035 948600.8366 975231.1026 949688.6193 987633.6083 988696.855 823996.027 1.171536706 1.142145763 1.259072191 0.917824697 1.151220158 1.183538598 1.152540289 1.198590255 1.199880609 1 19.65227786 -5.979766923 24.99997849 1.160530028 1.121375126 0.00621264 0.096281375 1026.73987 1268633.194 0.029641278 0.033606305 1.05E-06 5.979766923 -0.039154902 VKESSIIAPAPAEDVDT(ph)PPR ddPTM_HeLa_A486_30min_R1 2 VKESSIIAPAPAEDVDTPPR 20 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR ; 108.44 3.71E-05 2547400000 500990 558550 395850 187056 601110 519290 635980 608950 460010 633050 TRUE FALSE FALSE 465873.1881 514288.4638 549133.7212 435475.8213 525713.1787 455225.2796 476851.0773 470305.3783 499884.0372 474530.1595 0.981756752 1.083784568 1.157215638 0.917698933 1.107860413 0.959317907 1.00489098 0.991096917 1.053429434 1 18.85614026 -5.257757446 24.99986961 1.00691875 1.075205536 0.207693121 0.061978003 508.1674424 3450388.485 0.016397029 0.027137681 5.52E-06 5.257757446 0.068286786 VKEVHDELEDLPS(ph)PPPPLS(ph)PPPT(ph)TSPHKQTEDK ddPTM_HeLa_A486_30min_R1 2 VKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDK 33 2 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 3 0 VKEVHDELEDLPS(1)PPPPLS(0.999)PPPT(0.358)T(0.322)S(0.289)PHKQT(0.032)EDK;VKEVHDELEDLPS(1)PPPPLS(0.872)PPPT(0.386)T(0.358)S(0.33)PHKQT(0.053)EDK ; 118.58 2.05E-05 303700000 308520 232240 71471 169135 160725 342290 456640 365030 188884 520700 TRUE FALSE FALSE 286894.3412 213836.4566 99146.48526 393754.8276 140565.3718 300061.7399 342383.8422 281920.6375 205256.6172 390313.3308 0.735035979 0.54785845 0.254017676 1.008817267 0.360134694 0.768771436 0.877202532 0.72229313 0.525876523 1 18.57427321 -6.414991073 22.63009128 0.767702123 0.582854641 0.165278459 0.221373718 27.324077 5705.060069 0.075884348 0.066923639 3.85E-07 6.414991073 -0.184847482 VKEVHDELEDLPS(ph)PPPPLS(ph)PPPTTSPHK ddPTM_HeLa_A486_30min_R1 2 VKEVHDELEDLPSPPPPLSPPPTTSPHK 28 1 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 2 0 VKEVHDELEDLPS(1)PPPPLS(0.993)PPPT(0.003)T(0.003)S(0.001)PHK;VKEVHDELEDLPS(1)PPPPLS(0.871)PPPT(0.047)T(0.043)S(0.039)PHK ; 89.833 0.0032904 506400000 656640 621430 276306 61724 586190 614360 703740 697170 524710 636720 TRUE FALSE FALSE 610612.9269 572185.6236 383299.0829 143696.5914 512664.5842 538566.5096 527656.8086 538439.6101 570192.2853 477281.1676 1.279356841 1.198843915 0.803088638 0.301073248 1.074135371 1.128405112 1.105547095 1.128139232 1.194667471 1 18.86447989 -5.974023582 24.99999536 1.117028446 0.88276444 0.145285275 0.249401848 454.8724929 437772.2501 0.085106948 0.096499521 1.06E-06 5.974023582 -0.234264006 VKEVHDELEDLPSPPPPLS(ph)PPPTTSPHK ddPTM_HeLa_A485_30min_R1 1 VKEVHDELEDLPSPPPPLSPPPTTSPHK 28 1 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 1 0 VKEVHDELEDLPSPPPPLS(0.957)PPPT(0.014)T(0.014)S(0.014)PHK 98.37 0.00081534 342210000 303990 237510 213910 291310 373520 296480 440360 342270 295970 469160 TRUE FALSE FALSE 371611.5267 265284.7284 293044.2105 307223.5277 336331.0373 312003.2344 346273.4886 258327.7458 355368.4642 352207.0462 1.055093959 0.753206761 0.832022566 0.872281037 0.954924215 0.885851767 0.983153211 0.733454224 1.008976021 1 18.42606425 -5.596151502 10.47912369 0.915027493 0.864882739 0.038880582 0.102874417 1.445359155 197.3944711 0.02908773 0.037557473 2.53E-06 5.596151502 -0.050144754 VKEVHDELEDLPSPPPPLS(ph)PPPTTSPHK ddPTM_HeLa_A486_30min_R1 1 VKEVHDELEDLPSPPPPLSPPPTTSPHK 28 1 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 1 0 VKEVHDELEDLPSPPPPLS(0.998)PPPT(0.001)T(0.001)SPHK 112.81 0.00014292 235170000 147160 132330 78452 18285 151740 140780 166940 164810 116450 135430 TRUE FALSE FALSE 136844.8439 121843.6889 108830.7154 42568.40407 132707.3543 123411.9949 125169.8463 127286.3608 126543.9798 101517.4465 1.347993361 1.20022413 1.072039528 0.419321068 1.307236922 1.215672766 1.232988522 1.253837298 1.246524456 1 16.63136816 VKFEER ddPTM_HeLa_A485_30min_R1 1 VKFEER 6 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 69.093 0.037554 541370000 523760 573440 441760 604440 717140 738940 938800 1060300 636700 969640 FALSE FALSE TRUE 640268.605 640498.8197 605185.4072 637459.0267 645739.0236 777629.7558 738217.7107 800259.7625 764479.8498 727926.5929 0.879578533 0.879894794 0.831382468 0.875718833 0.887093602 1.06828046 1.014137576 1.099368769 1.050215581 1 19.47343344 -6.217989751 5.110393997 1.050893337 0.86759863 0.900741829 0.029156091 0.0568318 3.645826153 0.009667452 0.009487447 6.05E-07 6.217989751 -0.183294708 VKFTLAK ddPTM_HeLa_A486_30min_R1 1 VKFTLAK 7 1 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 RPS9 40S ribosomal protein S9 0 0 114.28 0.028262 0 137680 135540 94871 54578 150830 124360 162990 163130 115250 180530 FALSE FALSE TRUE 128029.343 124799.3168 131607.5919 127060.3422 131911.495 109017.7276 122208.1781 125988.8601 125239.9628 135324.1129 0.946094086 0.922225271 0.972536151 0.938933494 0.974781893 0.805604598 0.903077622 0.931015599 0.925481498 1 17.04605941 VKGDVDVSLPK ddPTM_HeLa_A485_30min_R1 2 VKGDVDVSLPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 136.82 0.00042671 71691000 719810 622820 379070 816100 708960 820540 1108430 1192630 627740 1209700 FALSE FALSE TRUE 879929.2512 695653.3812 519303.7674 860681.4765 638373.4531 863502.2056 871604.8755 900135.6225 753721.66 908144.0529 0.968931359 0.766016558 0.571829729 0.947736732 0.702942943 0.950842769 0.959764998 0.991181542 0.829958262 1 19.79256164 -6.281105967 24.02513856 0.946636858 0.786553058 0.312875986 0.114628235 613.9792075 750047.493 0.039892248 0.035238794 5.23E-07 6.281105967 -0.1600838 VKGDVDVSLPK ddPTM_HeLa_A486_30min_R1 1 VKGDVDVSLPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 113.65 0.0076005 0 82434 85317 44890 34124 87890 92305 102020 104350 66719 115320 FALSE FALSE TRUE 76655.80229 78556.1702 62272.6102 79442.39653 76866.01666 80917.34759 76493.51694 80591.78294 72502.25664 86443.12139 0.886777352 0.908761379 0.720388264 0.919013511 0.889209175 0.936076188 0.884899986 0.932309959 0.838727888 1 16.39946355 VKGDVDVSVPK ddPTM_HeLa_A485_30min_R1 1 VKGDVDVSVPK 11 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 98.105 0.0049905 23418000 59442 50968 30354 69209 65559 64966 84073 81745 53539 103620 FALSE FALSE TRUE 72664.66783 56928.26424 41583.20774 72989.71242 59031.71577 68367.5193 66110.11674 61696.91058 64283.78621 77789.44098 0.934119938 0.731825085 0.534561082 0.938298457 0.758865407 0.87887917 0.849859774 0.793127059 0.826381902 1 16.24728672 VKHGHFGWPGWEMGPPGNWS(ph)PRPPR ddPTM_HeLa_A485_30min_R1 2 VKHGHFGWPGWEMGPPGNWSPRPPR 25 2 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 VKHGHFGWPGWEMGPPGNWS(1)PRPPR;VKHGHFGWPGWEMGPPGNWS(1)PRPPR ; 140.35 1.98E-07 1151750000 1016090 1535780 850030 512260 871590 1519760 1501780 2781300 604160 654790 TRUE FALSE FALSE 1242115.715 1715376.111 1164491.47 540243.4667 784811.4393 1599332.284 1180912.435 2099181.814 725409.3703 491562.9035 2.526870328 3.489637032 2.36895718 1.099032215 1.596563601 3.253565865 2.402362803 4.27042358 1.47572033 1 18.90701652 -6.266419172 24.83710704 2.679937686 2.23337821 0 1.028739622 1566.574289 7813389.434 0.36109846 0.328593905 5.41E-07 6.266419172 -0.446559476 VKHGHFGWPGWEMGPPGNWS(ph)PRPPR ddPTM_HeLa_A486_30min_R1 1 VKHGHFGWPGWEMGPPGNWSPRPPR 25 2 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 VKHGHFGWPGWEMGPPGNWS(1)PRPPR 87.16 0.001536 249140000 594180 494610 361460 262940 682470 533600 591790 570170 340290 671470 TRUE FALSE FALSE 552531.0503 455415.3023 501426.9922 612137.6083 596868.2488 467769.8572 443717.8827 440354.7377 369786.6112 503329.5415 1.097752079 0.90480543 0.996220072 1.216176596 1.185839891 0.929351089 0.881565349 0.874883553 0.734680921 1 18.94114375 -6.464912333 5.366703415 0.867147298 1.073220373 0.486305427 0.101808408 0.202452511 12.31697931 0.039843702 0.034317509 3.43E-07 6.464912333 0.206073075 VKKPAPPQHFS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VKKPAPPQHFSPR 13 2 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 VKKPAPPQHFS(1)PR 81.428 0.0020137 307620000 287150 337930 242850 292640 384620 383400 403200 519370 317490 377600 TRUE FALSE FALSE 351025.5268 377447.9739 332690.3208 308626.1822 346325.8823 403474.2312 317053.0262 391993.6932 381207.3308 283471.2692 1.238310774 1.331521092 1.173629771 1.088738845 1.221731865 1.423333773 1.118466175 1.382833944 1.344782954 1 18.11284299 -6.022567036 24.84558117 1.275256455 1.207013922 0.014497476 0.130486809 2345.676824 2582509.961 0.041857379 0.042177058 9.49E-07 6.022567036 -0.068242533 VKKPAPPQHFS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VKKPAPPQHFSPR 13 2 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 0 VKKPAPPQHFS(1)PR 89.484 0.00074384 231820000 406830 369410 240580 148010 379450 339640 403550 381100 301950 427000 TRUE FALSE FALSE 378313.3179 340136.6062 333739.019 344574.76 331855.8428 297738.67 302577.5217 294331.8494 328123.2691 320076.4207 1.181946852 1.062673113 1.042685426 1.076539032 1.036801905 0.930211196 0.945328997 0.919567423 1.025140397 1 18.28805688 -6.026234778 2.93689616 0.958036797 1.085587736 0.631457645 0.045489722 0.17516035 3.049314483 0.015756079 0.016831724 9.41E-07 6.026234778 0.12755094 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_HeLa_A485_30min_R1 1 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 39 3 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 267.67 9.88E-66 492210000 208690 80149 33327 460090 171640 206510 469100 464640 113610 583750 FALSE FALSE TRUE 255112.3705 89521.72835 45656.04415 485223.5517 154550.9189 217322.5443 368872.9528 350686.3115 136410.4849 438231.8681 0.582140162 0.204279366 0.104182392 1.107230183 0.352669283 0.495907669 0.841730097 0.800230054 0.311274681 1 18.74133488 -7.572694806 0.111162638 1.342349719 8.97E-13 0.206337955 0.291401619 13.33607375 1.471401427 8.360029332 7.831202836 2.67E-08 7.572694806 -1.342349719 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_HeLa_A486_30min_R1 1 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 39 3 P06748;P06748-3;P06748-2 P06748 NPM1 Nucleophosmin 0 0 190.22 7.72E-22 207670000 60881 37951 9344.7 66724 35566 68574 135880 104330 30840 166820 FALSE FALSE TRUE 56613.55629 34943.62454 12963.2181 155336.844 31104.98064 60114.03709 101881.3868 80576.33651 33513.23603 125047.1862 0.452737547 0.279443509 0.103666612 1.242225825 0.248745946 0.480730826 0.814743537 0.64436745 0.268004719 1 16.93211307 -14 0.086650253 2.361136819 0.134737771 0.172737246 0.317362769 421.428656 2.549158296 111.0921497 8.553770573 1.00E-14 14 -2.226399048 VKLEAEIATYR ddPTM_HeLa_A486_30min_R1 1 VKLEAEIATYR 11 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 137.84 0.00038844 106730000 236690 239490 185850 109570 303380 220820 249280 226620 159880 210330 FALSE FALSE TRUE 220099.2533 220511.9402 257816.0972 255084.4974 265327.2515 193577.4735 186907.5074 175023.5731 173738.5271 157661.999 1.396019679 1.398637222 1.635245645 1.617919974 1.682886512 1.227800451 1.185494974 1.110118952 1.101968314 1 17.26647545 -6.431237246 4.029911422 1.117227959 1.545768499 0.82365567 0.098476859 0.10804332 3.160626794 0.040430188 0.034649018 3.70E-07 6.431237246 0.42854054 VKLEAEIATYRR ddPTM_HeLa_A485_30min_R1 2 VKLEAEIATYRR 12 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 142.57 0.00019068 72473000 103315 221849 114422 67398 165316 245690 271930 557080 112894 106525 FALSE FALSE TRUE 126297.0653 247792.3107 156751.4593 71079.78208 148856.5586 258553.9485 213829.934 420455.2565 135550.7903 79970.27795 1.579300067 3.098555077 1.960121477 0.888827498 1.86139854 3.233125545 2.673867586 5.257644056 1.69501462 1 16.28717628 -6.256014761 23.75420475 3.031904205 1.895117237 0.108744816 1.166382936 397.2432293 1739514.277 0.381392345 0.370409532 5.55E-07 6.256014761 -1.136786968 VKLESPTVSTLTPSS(ph)PGK ddPTM_HeLa_A485_30min_R1 2 VKLESPTVSTLTPSSPGK 18 1 A0A087WZR9;A0A087WTV6;Q96C36 A0A087WZR9 PYCR2 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 1 0 VKLESPTVSTLTPS(0.041)S(0.959)PGK;VKLESPTVSTLTPS(0.002)S(0.998)PGK ; 160.2 2.92E-12 680710000 736950 563820 318390 1085720 654360 727980 1092760 1123810 528700 1563440 TRUE FALSE FALSE 900881.9851 629753.8444 436175.7103 1145030.134 589209.6208 766095.9071 859282.899 848193.8354 634805.2405 1173703.181 0.767555204 0.536552899 0.371623522 0.975570445 0.502009052 0.652716905 0.73211261 0.722664681 0.54085671 1 20.16263618 -14 0.342118218 4.878473494 0.63223744 0.300920521 0.160703389 503.9347518 4.23635136 1428.990435 0.126246344 1.00E-14 14 -4.246236054 VKLESPTVSTLTPSS(ph)PGK ddPTM_HeLa_A486_30min_R1 2 VKLESPTVSTLTPSSPGK 18 1 A0A087WZR9;A0A087WTV6;Q96C36 A0A087WZR9 PYCR2 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 1 0 VKLESPTVSTLTPS(0.026)S(0.974)PGK;VKLESPTVSTLTPS(0.204)S(0.796)PGK ; 202.47 1.48E-25 607840000 699960 670060 276302 394620 593220 839050 995100 901330 570130 1328780 TRUE FALSE FALSE 650896.4186 616962.0053 383293.534 918695.303 518812.816 735536.5418 746115.4549 696116.8349 619549.3274 996044.8391 0.653481041 0.619411879 0.384815541 0.922343319 0.520872952 0.738457259 0.74907818 0.698881022 0.622009475 1 19.92585116 -14 0.174001839 2.343210724 0.581941967 0.379332386 0.133854258 138.9755565 1.321703096 64.56212251 0.442656946 1.00E-14 14 -1.761268757 VKLLLQVQHASK ddPTM_HeLa_A485_30min_R1 1 VKLLLQVQHASK 12 1 P05141;V9GYG0;P12235;P12236 P05141;P12236 SLC25A5;SLC25A4;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 83.617 0.0099627 14077000 51122 103570 33991 17680 43440 57709 73241 105500 23683 49382 FALSE FALSE TRUE 62493.91253 115681.6106 46565.68538 18645.81363 39114.96107 60730.554 57592.46203 79625.95958 28435.96087 37071.97621 1.685745378 3.120459776 1.256088565 0.502962495 1.055108604 1.638179569 1.553530939 2.147874695 0.767047343 1 15.1780414 -7.785622957 24.987531 0.883522681 1.600206095 0.168444672 0.653351036 539.9505569 557884.6937 0.684341728 0.17705591 1.64E-08 7.785622957 0.716683414 VKLNFDMTAS(ph)PK ddPTM_HeLa_A485_30min_R1 1 VKLNFDMTASPK 12 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 VKLNFDMT(0.002)AS(0.998)PK 112.5 0.00017321 233630000 359300 312860 194340 496210 405830 409070 728100 689060 303250 773180 TRUE FALSE FALSE 439225.0454 349446.2555 266234.4532 523316.6958 365424.1402 430488.2727 572535.487 520066.9546 364109.4934 580440.4553 0.756709911 0.602036354 0.458676598 0.901585496 0.629563527 0.74165794 0.986381086 0.895986746 0.627298615 1 19.14678855 -6.14793964 1.084865762 0.86565665 0.63625061 0.287053093 0.145785407 0.665211346 1.6485301 0.075519857 0.076081452 7.11E-07 6.14793964 -0.22940604 VKLNFDMTAS(ph)PK ddPTM_HeLa_A486_30min_R1 1 VKLNFDMTASPK 12 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-21;Q9ULU4-23;Q9ULU4-6;Q9ULU4-3;Q9ULU4-18;Q9ULU4-15;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 0 VKLNFDMT(0.255)AS(0.745)PK 43.791 0.033917 250530000 435900 310460 166220 341840 317540 423320 647590 599140 297240 920070 TRUE FALSE FALSE 405345.661 285858.0189 230584.8355 795820.7956 277711.1723 371095.0824 485556.1325 462728.9011 323005.0025 689678.4833 0.587731343 0.414480118 0.334336711 1.153901151 0.402667589 0.538069682 0.704032595 0.670934228 0.468341423 1 19.39556443 -14 0.311774571 4.646845288 0.571047887 0.235543604 0.221256222 460.360104 4.16710835 1104.091691 0.208857383 1.00E-14 14 -4.075797401 VKNFGIWLR ddPTM_HeLa_A485_30min_R1 2 VKNFGIWLR 9 1 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 157.91 4.16E-06 102900000 132335 245310 167198 95553 264430 202645 267820 335310 130368 139461 FALSE FALSE TRUE 161772.4642 273996.8706 229051.4979 100772.8184 238102.4207 213255.1789 210598.0691 253074.6968 156531.6618 104695.9393 1.545164648 2.617072567 2.187778241 0.962528433 2.274227848 2.036900192 2.011520891 2.417235076 1.495107287 1 16.67584596 -7.997467449 6.599927727 1.000305899 2.006789544 0.348592408 0.441623138 0.124932968 30.29281578 0.423895464 0.10985734 1.01E-08 7.997467449 1.006483645 VKNFGIWLR ddPTM_HeLa_A486_30min_R1 2 VKNFGIWLR 9 1 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 RPL18A 60S ribosomal protein L18a 0 0 ; ; 107.57 0.003208 68033000 90695 62336 50885 28586 76287 54706 78814 73308 50225 84078 FALSE FALSE TRUE 84337.74885 57396.26834 70589.03475 66549.65266 66718.37311 47956.92993 59093.90359 56617.3687 54578.54344 63024.32154 1.338177814 0.910700297 1.120028475 1.055936042 1.058613111 0.760927349 0.937636489 0.898341582 0.865991765 1 15.94362106 -6.108762491 6.788859486 0.889425764 1.088931232 0.45035527 0.113011169 0.237136137 12.9738102 0.035243438 0.035335806 7.78E-07 6.108762491 0.199505468 VKPAPLEIKPLPEWEELQAPVRS(ph)PITR ddPTM_HeLa_A485_30min_R1 1 VKPAPLEIKPLPEWEELQAPVRSPITR 27 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 VKPAPLEIKPLPEWEELQAPVRS(0.97)PIT(0.03)R 111.61 0.0020072 237940000 104750 94613 67842 104220 108730 110490 143950 140580 72336 136950 TRUE FALSE FALSE 128051.2761 105677.1673 92939.57894 109913.2747 97904.45943 116275.0855 113193.9065 106102.5346 86853.17169 102810.8854 1.245503097 1.027879168 0.903985785 1.069082075 0.952277174 1.130960843 1.100991457 1.032016544 0.844785758 1 16.6496335 -4.267574684 5.27446483 1.011005397 1.254441252 0.426563247 0.083067081 0.14855459 14.58168272 0.021098972 0.130594641 5.40E-05 4.267574684 0.243435855 VKPAPLEIKPLPEWEELQAPVRS(ph)PITR ddPTM_HeLa_A486_30min_R1 2 VKPAPLEIKPLPEWEELQAPVRSPITR 27 3 B7Z3B9;Q13480;Q13480-2 B7Z3B9 GAB1 GRB2-associated-binding protein 1 1 0 VKPAPLEIKPLPEWEELQAPVRS(0.992)PIT(0.008)R;VKPAPLEIKPLPEWEELQAPVRS(0.978)PIT(0.022)R ; 121.82 0.00024832 907920000 274230 250440 170605 99534 261500 214553 247210 214794 199962 293925 TRUE FALSE FALSE 255007.8931 230594.2223 236667.825 231720.1822 228700.2316 188083.6323 185355.4433 165890.0951 217294.8672 220324.2669 1.157420818 1.046612911 1.074179564 1.051723378 1.038016533 0.853667347 0.841284739 0.752936104 0.986250268 1 17.74926888 -6.175504285 3.650657493 0.867904775 1.076297248 0.615342858 0.073513247 0.151194571 3.81916571 0.024714901 0.024448721 6.68E-07 6.175504285 0.208392474 VKPAS(ph)PVAQPK ddPTM_HeLa_A485_30min_R1 4 VKPASPVAQPK 11 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK ;;; 128.06 2.50E-05 12450200000 9522000 7302700 4555140 13469900 9092900 9370100 15644300 14647300 6650730 16500400 TRUE FALSE FALSE 11640136.05 8156687.24 6240275.841 14205726.53 8187578.949 9860703.947 12301767.5 11055026.71 7985470.507 12387153.95 0.939694146 0.658479524 0.503769943 1.146811171 0.660973375 0.796042738 0.993106855 0.892458975 0.644657404 1 23.56234142 -5.240703883 24.99186547 0.864363939 0.696431092 0.171653464 0.175379515 1535.12027 1850231.436 0.046801578 0.08095291 5.75E-06 5.240703883 -0.167932847 VKPAS(ph)PVAQPK ddPTM_HeLa_A486_30min_R1 4 VKPASPVAQPK 11 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK;VKPAS(1)PVAQPK ;;; 164.15 2.96E-08 12933600000 22461800 18346500 6738160 10290600 14869900 21646900 28092200 25117800 13598900 31978900 TRUE FALSE FALSE 20887343.81 16892656.52 9347356.006 23957036.86 13004778.49 18976325.57 21063234.43 19399025.26 14777663.6 23971175.29 0.871352512 0.704707062 0.389941498 0.99941019 0.54251735 0.791631004 0.878690101 0.80926467 0.61647639 1 24.51479731 -6.497322139 24.56572905 0.813777125 0.697599643 0.09881092 0.178290445 1555.11435 1494822.479 0.06131621 0.053847665 3.18E-07 6.497322139 -0.116177482 VKPET(ph)PPR ddPTM_HeLa_A485_30min_R1 4 VKPETPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR ;;; 77.744 0.012908 30029700000 2359070 1921000 1620190 3544410 2549880 2003230 2983520 2397970 2047240 4399820 TRUE FALSE FALSE 2883836.983 2145644.24 2219565.703 3738032.143 2296004.994 2108116.025 2346066.579 1809864.098 2458102.29 3303025.847 0.873089439 0.649599591 0.671979514 1.131699332 0.695121716 0.638237823 0.710277996 0.547941246 0.74419711 1 21.65535683 VKPET(ph)PPR ddPTM_HeLa_A486_30min_R1 5 VKPETPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR;VKPET(1)PPR ;;;; 108.47 0.0015364 8808640000 5016380 5110220 2452450 2279540 3977030 5692990 6057330 6023750 3816310 7924480 TRUE FALSE FALSE 4664757.667 4705267.556 3402104.319 5306884.322 3478193.813 4990646.776 4541721.966 4652273.623 4147110.824 5940138.628 0.785294411 0.792114099 0.572731468 0.893394019 0.585540849 0.840156617 0.764581814 0.783192769 0.698150512 1 22.50206517 -10.70617518 2.461238226 1.047964918 0.746387681 0.3814771 0.096978746 10633229.7 7969142.473 3149375.684 0.022970208 1.97E-11 10.70617518 -0.301577236 VKPET(ph)PPRQSHSGSIS(ph)PYPK ddPTM_HeLa_A485_30min_R1 2 VKPETPPRQSHSGSISPYPK 20 2 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 VKPET(0.999)PPRQS(0.001)HS(0.002)GS(0.003)IS(0.995)PYPK;VKPET(0.992)PPRQS(0.007)HS(0.001)GSIS(1)PYPK ; 147.54 9.23E-09 7820600000 1966360 2092750 1136890 2446640 3028800 3002000 5508300 6241500 1701330 3980400 TRUE FALSE FALSE 2403769.998 2337478.908 1557472.921 2580293.748 2727242.037 3159180.078 4331406.706 4710762.339 2042771.325 2988159.534 0.804431614 0.782247026 0.521214782 0.863506021 0.912682876 1.057232735 1.449523246 1.576476184 0.683621909 1 21.51082574 -6.107525329 1.801381674 1.220177436 0.724486926 0.386788306 0.243477633 0.334920812 2.163447418 0.096286044 0.098208098 7.81E-07 6.107525329 -0.49569051 VKPET(ph)PPRQSHSGSIS(ph)PYPK ddPTM_HeLa_A486_30min_R1 3 VKPETPPRQSHSGSISPYPK 20 2 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 VKPET(0.999)PPRQS(0.001)HS(0.002)GS(0.005)IS(0.993)PYPK;VKPET(0.959)PPRQS(0.03)HS(0.01)GS(0.003)IS(0.98)PY(0.018)PK;VKPET(0.993)PPRQS(0.007)HSGSIS(0.999)PYPK ;; 163.38 1.33E-12 10684600000 3727260 2529970 1249650 1396330 3377100 3534840 6235870 5863100 2063600 6084820 TRUE FALSE FALSE 3465998.322 2329485.963 1733547.947 3250726.807 2953512.628 3098747.38 4675589.37 4528200.121 2242474.51 4561141.466 0.759897133 0.51072434 0.380068884 0.712700281 0.647538045 0.679379801 1.025091943 0.992777829 0.491647656 1 22.12096349 -6.580569424 5.861710836 0.87641434 0.597336434 0.364201253 0.172115371 0.223450678 15.75374515 0.067202824 0.051970153 2.63E-07 6.580569424 -0.279077906 VKPET(ph)PPRQSHSGSISPYPK ddPTM_HeLa_A485_30min_R1 2 VKPETPPRQSHSGSISPYPK 20 2 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKPET(0.425)PPRQS(0.425)HS(0.075)GS(0.075)ISPYPK;VKPET(0.939)PPRQS(0.052)HS(0.004)GS(0.004)ISPYPK ; 99.021 0.00016887 2898800000 903310 1177750 718650 830120 1620750 1508270 2312130 2991200 1042010 1614110 TRUE FALSE FALSE 1104248.193 1315477.617 984508.5405 875467.3536 1459382.439 1587240.685 1818124.537 2257603.51 1251131.849 1211742.082 0.911289794 1.085608593 0.812473673 0.722486547 1.204367217 1.309883273 1.500422048 1.863105642 1.032506725 1 20.20865123 -6.016265853 3.045449568 1.403501854 0.893756814 0.419987918 0.247207361 0.229315013 4.336946808 0.083886472 0.09010763 9.63E-07 6.016265853 -0.50974504 VKPET(ph)PPRQSHSGSISPYPK ddPTM_HeLa_A486_30min_R1 2 VKPETPPRQSHSGSISPYPK 20 2 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKPET(0.927)PPRQS(0.066)HS(0.005)GS(0.002)ISPYPK;VKPET(0.93)PPRQS(0.054)HS(0.009)GS(0.006)ISPYPK ; 120.66 5.42E-06 2434800000 3737660 2661520 1549730 353551 3489270 2992410 4753910 4371790 2313190 3567270 TRUE FALSE FALSE 3475669.335 2450611.462 2149826.959 823084.5955 3051613.22 2623236.879 3564431.436 3376428.853 2513699.172 2674002.373 1.299800393 0.916458223 0.803973467 0.307809972 1.141215599 0.981015165 1.332994867 1.262687306 0.940051212 1 21.35056932 VKPFMTGAAEQIKHILANFK ddPTM_HeLa_A485_30min_R1 1 VKPFMTGAAEQIKHILANFK 20 2 J3KPG2;E9PJF7;Q5W0H4;A0A0B4J2C3;P13693-2;P13693;Q56UQ5 J3KPG2 TPT1 Translationally-controlled tumor protein;TPT1-like protein 0 0 76.061 0.0027805 20459000 3520.6 3150.6 2212.3 3010.2 2395 7150.6 8426.1 21019 1727.3 4858.4 FALSE FALSE TRUE 4303.745324 3519.035263 3030.721831 3174.639604 2156.545391 7524.994359 6625.7949 15864.05729 2073.953266 3647.290292 1.179984311 0.96483553 0.830951635 0.870410455 0.591273306 2.063173961 1.816634918 4.349546108 0.568628516 1 11.83260931 -6.303365947 7.287767252 2.16467431 0.888052508 0.228566361 0.94820939 0.320482741 47.84108468 0.320470021 0.284459616 4.97E-07 6.303365947 -1.276621802 VKPLHYISWLVGHEGK ddPTM_HeLa_A486_30min_R1 2 VKPLHYISWLVGHEGK 16 1 O43847;O43847-2;F5H7V1;G3V1R5 O43847 NRD1 Nardilysin 0 0 ; ; 170.91 5.02E-11 15542600 74348 56853 47114 12677.9 64814 53126 65926 58016 50668 67492 FALSE FALSE TRUE 69136.58913 52347.76122 65357.80256 29514.79191 56684.42375 46571.85427 49430.61751 44807.02328 55059.94304 50591.5639 1.366563589 1.034713244 1.29187156 0.583393547 1.120432329 0.920545851 0.97705257 0.885661953 1.088322613 1 15.62660922 -4.202522237 1.100211733 0.95450618 1.565523845 0.32755323 0.169912023 2.181167274 2.011708421 0.050620151 1.598882029 6.27E-05 4.202522237 0.611017665 VKPLLQVS(ph)R ddPTM_HeLa_A485_30min_R1 2 VKPLLQVSR 9 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 VKPLLQVS(1)R;VKPLLQVS(1)R ; 110.08 0.00045503 777110000 498340 614940 506410 518080 672190 583400 703900 797030 559830 693210 TRUE FALSE FALSE 609194.0137 686851.8837 693752.1325 546381.3986 605264.4034 613945.9219 553506.0147 601557.1428 672182.7459 520405.5046 1.170614085 1.319839774 1.333099144 1.049914718 1.163063031 1.17974525 1.063605227 1.155939239 1.291651875 1 18.9892767 -5.253370054 24.93170702 1.136421281 1.27904988 0.370116292 0.086489328 643.2036168 1987293.674 0.023157311 0.039235652 5.58E-06 5.253370054 0.142628599 VKPLLQVS(ph)R ddPTM_HeLa_A486_30min_R1 2 VKPLLQVSR 9 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 VKPLLQVS(1)R;VKPLLQVS(1)R ; 117.09 0.000292 713480000 739350 657080 443910 249510 639230 655420 749440 739060 554910 713100 TRUE FALSE FALSE 687525.383 605010.5878 615803.8403 580871.8895 559051.8128 574560.9442 561922.1852 570792.1716 603010.0456 534535.1185 1.286211811 1.131844414 1.152036263 1.086686112 1.045865451 1.074879693 1.051235299 1.067829132 1.12810183 1 19.02792521 -1.000000002 0.620237434 1.062729286 16.96505262 0.789886109 0.034386957 81.76771114 0.589849779 0.014589117 1772.113048 0.1 1.000000002 15.90232333 VKPLLQVSR ddPTM_HeLa_A485_30min_R1 1 VKPLLQVSR 9 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 101.38 0.032801 0 39685 51069 49403 39966 63884 44979 58220 60797 43992 56224 FALSE FALSE TRUE 48512.79134 57041.07531 67679.22553 42149.24138 57523.48465 47334.03089 45780.82139 45886.44042 52820.79088 42208.39153 1.149363659 1.351415518 1.603454268 0.998598616 1.362844747 1.121436501 1.084637906 1.087140229 1.251428661 1 15.36524223 -5.914612125 1.134295682 1.111256445 1.335211531 0.237598254 0.158664565 0.70540234 1.928078801 0.071213057 0.089900743 1.22E-06 5.914612125 0.223955086 VKPNFPFLLFMR ddPTM_HeLa_A485_30min_R1 1 VKPNFPFLLFMR 12 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 0 0 110.66 0.0091965 0 4797.7 3976 3823.7 3556.8 5645.2 4774 7003.5 8256.8 2479.3 4562.9 FALSE FALSE TRUE 5864.931813 4440.958613 5238.245747 3751.098978 5083.144067 5023.959258 5507.145012 6231.806854 2976.872769 3425.453004 1.712162393 1.296458777 1.529212557 1.095066543 1.483933384 1.466655433 1.607712908 1.819265028 0.869044989 1 11.74207908 -7.780150126 24.99829719 0.934521842 1.483681369 0.575553497 0.194220386 206.346084 275678.7928 0.188859097 0.049107368 1.66E-08 7.780150126 0.549159527 VKPPGGHS(ph)PQVNHLK ddPTM_HeLa_A486_30min_R1 2 VKPPGGHSPQVNHLK 15 1 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 0 VKPPGGHS(1)PQVNHLK;VKPPGGHS(1)PQVNHLK ; 178.06 9.09E-14 2184690000 1876390 1651980 861390 671030 1524200 1889960 2074250 1939220 1434100 2484400 TRUE FALSE FALSE 1744864.751 1521071.088 1194943.277 1562191.752 1333020.623 1656795.951 1555250.711 1497701.939 1558408.943 1862290.069 0.936945742 0.816774526 0.641652606 0.838855223 0.715796452 0.88965515 0.83512807 0.804225917 0.836823956 1 20.82864637 -6.282398113 24.93059363 0.858553329 0.785964213 0.172847738 0.087885367 1658.976663 1973360.477 0.030932268 0.027306011 5.22E-07 6.282398113 -0.072589115 VKPPPS(ph)PTTEGPSLQPDLAPEEAAGTQRPK ddPTM_HeLa_A485_30min_R1 4 VKPPPSPTTEGPSLQPDLAPEEAAGTQRPK 30 2 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 VKPPPS(0.935)PT(0.048)T(0.016)EGPSLQPDLAPEEAAGTQRPK;VKPPPS(0.857)PT(0.113)T(0.03)EGPSLQPDLAPEEAAGTQRPK;VKPPPS(0.961)PT(0.027)T(0.011)EGPSLQPDLAPEEAAGTQRPK;VKPPPS(0.818)PT(0.153)T(0.029)EGPSLQPDLAPEEAAGTQRPK ;;; 194.37 1.18E-21 18256970000 2413327 2230150 1601808 2563221 2509304 2854585 3802913 4084076 1963881 3579943 TRUE FALSE FALSE 2950163.265 2490946.643 2194383.436 2703243.273 2259468.883 3004046.657 2990389.571 3082449.957 2358013.903 2687529.094 1.097723285 0.926853833 0.816505928 1.005847073 0.840723506 1.117772702 1.11269105 1.146945707 0.877391024 1 21.35784894 -6.272360023 24.96622923 1.064002388 0.934009315 0.228394425 0.102754543 976.3713426 2232125.353 0.035663398 0.031761729 5.34E-07 6.272360023 -0.129993073 VKPPPS(ph)PTTEGPSLQPDLAPEEAAGTQRPK ddPTM_HeLa_A486_30min_R1 4 VKPPPSPTTEGPSLQPDLAPEEAAGTQRPK 30 2 Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5 Q9Y2D5-6 AKAP2 A-kinase anchor protein 2 1 0 VKPPPS(0.997)PT(0.003)TEGPSLQPDLAPEEAAGTQRPK;VKPPPS(0.91)PT(0.078)T(0.012)EGPSLQPDLAPEEAAGTQRPK;VKPPPS(0.996)PT(0.004)TEGPSLQPDLAPEEAAGTQRPK;VKPPPS(0.741)PT(0.247)T(0.012)EGPSLQPDLAPEEAAGTQRPK ;;; 287.3 1.86E-78 18755300000 3927070 3334680 1748930 1266036 3028090 3422190 4010520 3966600 2607540 4850970 TRUE FALSE FALSE 3651802.672 3070427.812 2426162.534 2947395.79 2648278.716 2999994.992 3007045.477 3063491.77 2833563.667 3636255.537 1.004275589 0.84439275 0.667214531 0.810557938 0.728298297 0.825023148 0.826962089 0.842485282 0.779253173 1 21.79402216 -10.37834823 7.266168452 1.000005786 0.809715366 0.310492443 0.082780269 7.90E-06 6.76E-07 0.081591086 0.019788143 4.18E-11 10.37834823 -0.19029042 VKPTTQSEVSPLFAGTDVIPAHQFPDELAAYHPTPPLS(ph)PELPGSCR ddPTM_HeLa_A485_30min_R1 1 VKPTTQSEVSPLFAGTDVIPAHQFPDELAAYHPTPPLSPELPGSCR 46 1 H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4;H3BV44 H3BRD5 MYO9A Unconventional myosin-IXa 1 0 VKPTTQSEVSPLFAGTDVIPAHQFPDELAAY(0.003)HPT(0.02)PPLS(0.96)PELPGS(0.017)CR 83.626 6.80E-05 58577000 39613 44230 42835 37989 57169 43174 57643 64110 45820 69005 TRUE FALSE FALSE 48424.77519 49402.31375 58681.44901 40064.24288 51477.05363 45434.52388 45327.10215 48386.92198 55015.65371 51803.32344 0.934781245 0.953651435 1.132773828 0.773391362 0.993701759 0.877058089 0.874984444 0.934050535 1.062010119 1 15.66075704 -10.49423872 7.637407235 1.000007469 0.945553527 0.024879084 0.095161547 1.18E-05 7.83E-07 0.090001965 0.021825689 3.20E-11 10.49423872 -0.054453942 VKPTTQSEVSPLFAGTDVIPAHQFPDELAAYHPTPPLS(ph)PELPGSCR ddPTM_HeLa_A486_30min_R1 1 VKPTTQSEVSPLFAGTDVIPAHQFPDELAAYHPTPPLSPELPGSCR 46 1 H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4;H3BV44 H3BRD5 MYO9A Unconventional myosin-IXa 1 0 VKPTTQSEVSPLFAGTDVIPAHQFPDELAAY(0.019)HPT(0.198)PPLS(0.729)PELPGS(0.054)CR 60.659 0.0027138 93817000 16576 26099 19178 4951.1 25029 17132 17634 18596 19195 15344 TRUE FALSE FALSE 15414.108 24030.82019 26604.2352 11526.41101 21889.62943 15018.42803 13221.78669 14362.09675 20858.83806 11501.76253 1.340151821 2.089316323 2.31305725 1.002143018 1.903154354 1.30575014 1.149544399 1.2486866 1.813534057 1 13.48956734 -5.262286399 24.99999301 1.369815555 1.931689241 0.334130365 0.366167124 88.14863638 2601757.915 0.100067901 0.158780224 5.47E-06 5.262286399 0.561873687 VKS(ph)PGGPGSHVR ddPTM_HeLa_A485_30min_R1 4 VKSPGGPGSHVR 12 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 VKS(0.999)PGGPGS(0.001)HVR;VKS(1)PGGPGSHVR;VKS(0.999)PGGPGS(0.001)HVR;VKS(0.898)PGGPGS(0.102)HVR ;;; 111.7 0.00018472 2116100000 585600 663840 489650 728010 826910 747120 994800 1036770 612380 1032600 TRUE FALSE FALSE 715864.6997 741470.3134 670791.911 767779.3429 744579.9369 786238.0479 782252.8532 782500.5319 735279.0489 775191.8236 0.923467815 0.956499141 0.86532377 0.990437876 0.960510566 1.014249666 1.009108751 1.009428258 0.948512389 1 19.56419383 -5.301844628 21.41240585 0.99125177 0.919237189 0.586425896 0.028879125 65.6780575 34805.18151 0.008056679 0.011950611 4.99E-06 5.301844628 -0.072014581 VKS(ph)PGGPGSHVR ddPTM_HeLa_A486_30min_R1 3 VKSPGGPGSHVR 12 1 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 VKS(1)PGGPGSHVR;VKS(1)PGGPGSHVR;VKS(0.998)PGGPGS(0.002)HVR ;; 121.32 4.65E-05 1472150000 618300 578480 386340 252127 615200 624620 792150 725070 471520 780380 TRUE FALSE FALSE 574960.3629 532639.138 535941.1945 586964.3978 538035.8795 547560.7351 593945.6915 559987.3892 512391.7332 584967.7686 0.982892381 0.910544421 0.916189273 1.003413229 0.919770128 0.93605283 1.015347722 0.957296144 0.875931565 1 19.15799761 VKS(ph)PQRPSDWSK ddPTM_HeLa_A485_30min_R1 2 VKSPQRPSDWSK 12 2 Q5UIP0;Q5UIP0-2;H7BZN3 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 VKS(0.996)PQRPS(0.004)DWSK;VKS(1)PQRPSDWSK ; 133.28 9.60E-06 1976390000 2302200 1905480 1282300 2912500 2434900 2209590 3194000 3617900 1928200 3771500 TRUE FALSE FALSE 2814316.448 2128309.311 1756676.131 3071602.5 2192472.807 2325280.716 2511575.807 2730604.352 2315172.054 2831334.459 0.993989403 0.751698304 0.620441052 1.084860353 0.774360231 0.821266703 0.887064331 0.964423099 0.817696421 1 21.43305075 -8.748499192 0.295337625 1.034874681 0.819647315 0.103206039 0.126398722 9.988534281 1.565861808 0.63460426 0.172153533 1.78E-09 8.748499192 -0.215227366 VKS(ph)PQRPSDWSK ddPTM_HeLa_A486_30min_R1 3 VKSPQRPSDWSK 12 2 Q5UIP0;Q5UIP0-2;H7BZN3 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 VKS(0.885)PQRPS(0.115)DWSK;VKS(0.999)PQRPS(0.001)DWSK;VKS(1)PQRPSDWSK ;; 105.06 0.00025772 2158500000 2968020 2435370 1202863 1023833 1887530 2549720 3348870 2827120 1830130 3265220 TRUE FALSE FALSE 2759977.125 2242382.412 1668643.767 2383534.966 1650778.387 2235161.47 2510947.305 2183446.492 1988767.142 2447587.659 1.127631574 0.916160205 0.68175036 0.973830276 0.674451181 0.913209977 1.025886569 0.892081018 0.812541743 1 21.2229291 -8.887710119 14.70242267 0.999999994 0.88617642 0.055493405 0.133868248 0 0 0.129399193 0.031383914 1.30E-09 8.887710119 -0.113823573 VKS(ph)ST(ph)PPRQS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 VKSSTPPRQSPSR 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 VKS(0.803)S(0.219)T(0.931)PPRQS(0.932)PS(0.116)R;VKS(0.971)S(0.105)T(0.892)PPRQS(0.625)PS(0.407)R ; 92.897 0.0016425 2402690000 2870750 2440770 1991080 4156500 3422300 2874330 4103500 3750600 2421460 5631200 TRUE FALSE FALSE 3509338.434 2726196.82 2727663.348 4383559.07 3081563.796 3024825.474 3226753.702 2830759.469 2907424.811 4227445.475 0.830132158 0.644880422 0.645227328 1.036928589 0.728942292 0.715520872 0.763286888 0.669614661 0.687749807 1 22.01135472 VKS(ph)ST(ph)PPRQS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 VKSSTPPRQSPSR 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 VKS(0.939)S(0.141)T(0.678)PPRQS(0.971)PS(0.271)R;VKS(0.947)S(0.361)T(0.69)PPRQS(0.844)PS(0.157)R ; 85.087 0.0028706 2508300000 2751060 2500400 1283650 1547140 2300630 2863500 3599200 3307200 1984600 4392900 TRUE FALSE FALSE 2558224.9 2302259.198 1780713.657 3601820.108 2012063.533 2510230.484 2698642.092 2554222.756 2156626.726 3292889.247 0.776893697 0.699160836 0.540775448 1.093817568 0.61103286 0.762318528 0.819536246 0.775678307 0.654934486 1 21.65092256 -10.37100261 3.272567585 1.002177628 0.750140109 0.222440114 0.141171411 69246853.49 99287423.59 1453225.309 0.034859551 4.26E-11 10.37100261 -0.252037519 VKSGT(ph)PPR ddPTM_HeLa_A485_30min_R1 4 VKSGTPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKS(0.057)GT(0.943)PPR;VKS(0.056)GT(0.944)PPR;VKS(0.021)GT(0.979)PPR;VKS(0.066)GT(0.934)PPR ;;; 93.561 0.0039657 3456800000 1660990 2137850 1423900 1591530 1857230 1920990 2393520 2681920 1837410 2185960 TRUE FALSE FALSE 2030471.495 2387852.961 1950659.863 1678471.254 1672317.66 2021570.066 1882124.899 2024174.915 2206161.333 1641040.402 1.237307438 1.45508481 1.188672662 1.02280922 1.019059408 1.231883178 1.146909544 1.233470494 1.34436747 1 20.64617933 -4.913142685 7.163538638 1.147751354 1.344120856 0.32901168 0.114407438 0.257081151 17.86933933 0.030901083 0.065060967 1.22E-05 4.913142685 0.196369502 VKSGT(ph)PPR ddPTM_HeLa_A486_30min_R1 3 VKSGTPPR 8 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKS(0.091)GT(0.909)PPR;VKS(0.058)GT(0.942)PPR;VKS(0.107)GT(0.893)PPR ;; 81.525 0.0094892 2966580000 1458190 846610 728050 459085 880470 1134750 1242640 1073440 859100 1519600 TRUE FALSE FALSE 1355978.411 779521.5403 1009970.458 1068773.081 770033.2425 994756.0823 931718.3287 829041.145 933567.4797 1139082.269 1.190413061 0.684341738 0.886652778 0.938275584 0.676011965 0.873296082 0.817955256 0.727814985 0.819578625 1 20.11944052 -4.248102263 24.59744374 0.818493367 1.190413367 0.541613386 0.100728915 1312.808192 2421141.755 0.023730241 0.437870931 5.65E-05 4.248102263 0.371919999 VKSGT(ph)PPRQGS(ph)ITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 3 VKSGTPPRQGSITSPQANEQSVTPQRR 27 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 VKS(0.424)GT(0.571)PPRQGS(0.335)IT(0.335)S(0.335)PQANEQS(0.001)VT(0.999)PQRR;VKS(0.45)GT(0.527)PPRQGS(0.34)IT(0.341)S(0.341)PQANEQS(0.102)VT(0.898)PQRR;VKS(0.459)GT(0.548)PPRQGS(0.331)IT(0.331)S(0.331)PQANEQS(0.061)VT(0.939)PQRR ;; 114.62 0.00019496 2456160000 474600 1035850 567070 403917 1082510 1307420 1717580 3123470 611170 579790 TRUE FALSE FALSE 580173.1326 1156983.647 776852.7908 425981.9629 974731.5035 1375874.49 1350605.002 2357434.085 733826.213 435259.0232 1.332937634 2.658149711 1.784805712 0.978686116 2.239428596 3.161047597 3.10299139 5.416163616 1.685952901 1 18.73151468 -6.139726658 3.684380093 3.165471259 1.751074653 0.163128646 1.165407806 0.354648547 8.650838812 0.387891206 0.389287364 7.25E-07 6.139726658 -1.414396607 VKSGT(ph)PPRQGS(ph)ITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 3 VKSGTPPRQGSITSPQANEQSVTPQRR 27 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 VKS(0.454)GT(0.546)PPRQGS(0.375)IT(0.312)S(0.312)PQANEQS(0.049)VT(0.951)PQRR;VKS(0.468)GT(0.533)PPRQGS(0.333)IT(0.333)S(0.333)PQANEQS(0.141)VT(0.859)PQRR;VKS(0.468)GT(0.532)PPRQGS(0.333)IT(0.333)S(0.333)PQANEQS(0.158)VT(0.843)PQRR ;; 83.59 0.0039943 1226630000 639310 372260 307315 275986 753130 383124 697180 776880 245326 715400 TRUE FALSE FALSE 594497.6704 342760.7619 426315.5982 642509.3556 658665.4127 335858.0562 522738.19 600001.3832 266591.0552 536259.1835 1.108601379 0.639169962 0.794980508 1.198132126 1.228259455 0.626298004 0.974786458 1.118864537 0.497130983 1 19.03257092 -9.709020096 10.66771656 1.000035449 0.915857685 0.0113609 0.246870915 0 0 0.237225818 0.057535712 1.95E-10 9.709020096 -0.084177765 VKSGT(ph)PPRQGSIT(ph)SPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 1 VKSGTPPRQGSITSPQANEQSVTPQRR 27 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 VKS(0.45)GT(0.55)PPRQGS(0.291)IT(0.354)S(0.354)PQANEQS(0.222)VT(0.778)PQRR 92.846 0.00097382 621970000 112410 230810 143130 84062 259160 315220 388290 691560 158010 130040 TRUE FALSE FALSE 137415.2167 257801.2217 196079.7431 88654.0942 233357.1204 331724.4318 305328.6695 521953.8257 189721.1576 97623.42121 1.407605009 2.64077225 2.008531771 0.908123206 2.39038048 3.398000476 3.127616976 5.346604526 1.94339796 1 16.57493969 -6.072743153 4.424079594 3.233257402 1.804563353 0.184083758 1.135238407 0.310455923 11.47952281 0.367647002 0.375747247 8.46E-07 6.072743153 -1.428694049 VKSGT(ph)PPRQGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A485_30min_R1 1 VKSGTPPRQGSITSPQANEQSVTPQRR 27 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 VKS(0.466)GT(0.53)PPRQGS(0.046)IT(0.041)S(0.038)PQANEQS(0.217)VT(0.662)PQRR 49.767 0.015763 519390000 60629 118030 75619 36642 124090 163440 205920 338270 78766 52659 TRUE FALSE FALSE 74115.71188 131832.5818 103593.6149 38643.65968 111735.1639 171997.4657 161923.5098 255308.7521 94573.61372 39532.08042 1.874824474 3.334825296 2.620494894 0.977526588 2.826442796 4.350832637 4.096002742 6.458267549 2.392325745 1 15.27073626 -6.109533328 4.742245872 4.017308154 2.269631216 0.162027071 1.447302922 0.329428364 11.62244371 0.469227654 0.473222538 7.77E-07 6.109533328 -1.747676938 VKSGT(ph)PPRQGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_A486_30min_R1 1 VKSGTPPRQGSITSPQANEQSVTPQRR 27 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 VKS(0.464)GT(0.533)PPRQGS(0.002)IT(0.002)S(0.002)PQANEQS(0.068)VT(0.93)PQRR 51.848 0.01442 199340000 174930 98083 97632 66616 188280 97869 176570 178800 67861 168650 TRUE FALSE FALSE 162668.3103 90310.54587 135437.7251 155085.4146 164664.1668 85794.91784 132390.3184 138091.1432 73743.24612 126418.9423 1.286740004 0.714375111 1.071340439 1.226757729 1.302527642 0.678655558 1.047234821 1.092329525 0.58332434 1 16.94785312 -6.258658855 24.97314186 0.896512324 1.100983103 0.234973728 0.214151627 452.767903 4066523.443 0.0734385 0.070308981 5.51E-07 6.258658855 0.204470779 VKSLSVYHPQVIVGLLK ddPTM_HeLa_A485_30min_R1 1 VKSLSVYHPQVIVGLLK 17 1 H0Y8C4 H0Y8C4 PPP2R5D 0 0 52.453 0.02918 11391000 15839 4553.9 3030.4 97946 4346.5 15292 24035 18842 4612.7 64271 FALSE FALSE TRUE 19362.33091 5086.438991 4151.471065 103296.542 3913.747199 16092.66547 18899.7259 14220.96996 5538.42658 48249.42252 0.401296635 0.105419686 0.086041881 2.140886597 0.081114902 0.333530737 0.391708852 0.294738656 0.114787417 1 15.55822405 -10.26053336 4.664842048 1.000195553 0.4494711 0.076644944 0.583273483 0.001202075 0.000190553 0.57226018 0.138744822 5.49E-11 10.26053336 -0.550724453 VKSTRPGSS(ph)DINVAPGEQGPDQEETNTLVANTSNSNGLK ddPTM_HeLa_A485_30min_R1 1 VKSTRPGSSDINVAPGEQGPDQEETNTLVANTSNSNGLK 39 2 Q9Y6M5 Q9Y6M5 SLC30A1 Zinc transporter 1 1 0 VKS(0.217)T(0.217)RPGS(0.217)S(0.349)DINVAPGEQGPDQEETNTLVANTSNSNGLK 199.09 5.34E-30 107030000 51178 43603 23114 50218 27144 54767 61787 65701 33898 103430 TRUE FALSE FALSE 62562.36954 48701.99155 31664.83045 52961.28218 24441.44805 57634.51543 48585.7027 49587.72673 40701.01767 77646.80449 0.805730126 0.627224673 0.40780597 0.682079353 0.314777256 0.74226513 0.625727009 0.638631906 0.52418149 1 16.24463893 -10.38156347 3.070702886 1.005097681 0.592464118 0.427217416 0.140096735 48708985.2 62192682.5 2225976.479 0.03416755 4.15E-11 10.38156347 -0.412633563 VKT(ph)PEMIIQKPK ddPTM_HeLa_A485_30min_R1 2 VKTPEMIIQKPK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VKT(1)PEMIIQKPK;VKT(1)PEMIIQKPK ; 155.92 2.61E-07 19843700000 8848980 5081570 2663500 15774400 9036970 9160260 15753300 15324950 6335280 24934500 TRUE FALSE FALSE 10817405.07 5675815.408 3648839.487 16636115.53 8137217.536 9639877.049 12387478.76 11566481.98 7606712.585 18718788.04 0.577890249 0.303214898 0.194929259 0.888738924 0.434708568 0.514984038 0.661767137 0.617907632 0.406367793 1 24.15798369 -14 0.16881682 2.845734552 0.397960697 0.385524749 0.18487745 141.178902 1.327046738 87.59837969 0.690810312 1.00E-14 14 -2.447773855 VKT(ph)PEMIIQKPK ddPTM_HeLa_A486_30min_R1 4 VKTPEMIIQKPK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VKT(1)PEMIIQKPK;VKT(1)PEMIIQKPK;VKT(1)PEMIIQKPK;VKT(1)PEMIIQKPK ;;; 151.8 1.06E-07 37098000000 7055950 7471540 2709520 5798290 6345820 11181400 15598800 13696100 6120190 15748200 TRUE FALSE FALSE 6561364.342 6879467.96 3758718.707 13498712.15 5549868.083 9801952.552 11695815.25 10577797.01 6650692.997 11804748.22 0.555824167 0.582771257 0.318407359 1.143498523 0.470138624 0.830339824 0.990772106 0.896062908 0.563391347 1 23.49286393 -5.246014561 24.99413674 0.827913492 0.495377972 0.397926164 0.200241278 875.605132 1418814.957 0.0529846 0.091342234 5.68E-06 5.246014561 -0.33253552 VKT(ph)TPLR ddPTM_HeLa_A486_30min_R1 2 VKTTPLR 7 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VKT(0.5)T(0.5)PLR;VKT(0.65)T(0.35)PLR ; 69.423 0.025626 676700000 578860 617180 394980 251060 567120 588390 639500 658500 487000 752180 TRUE FALSE FALSE 538284.9032 568272.4091 547926.8339 584480.3679 495986.5214 515800.4241 479490.3361 508573.925 529213.5521 563829.2321 0.954694919 1.007880359 0.971795719 1.036626579 0.879675074 0.914816747 0.85041766 0.901999925 0.938606092 1 19.10489875 -5.768714473 24.99995137 0.906189037 0.992333489 0.447175863 0.042188675 136.0784683 467615.387 0.012440766 0.014393358 1.70E-06 5.768714473 0.086144452 VKTT(ph)PLR ddPTM_HeLa_A485_30min_R1 2 VKTTPLR 7 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VKT(0.24)T(0.76)PLR;VKT(0.26)T(0.74)PLR ; 102.55 0.0047096 1367500000 705630 615730 586350 901770 881570 692280 859300 751070 674840 1140920 TRUE FALSE FALSE 862594.9591 687734.2674 803265.2651 951031.4117 793797.7954 728526.7103 675703.5352 566868.9049 810274.198 856509.6411 1.007104786 0.802949826 0.937835637 1.110356925 0.92678209 0.850576194 0.788903595 0.661835988 0.946018771 1 19.70810996 -6.2683898 3.668503833 0.822054575 0.957582327 0.174297283 0.111590139 0.353093236 10.54051023 0.040456502 0.037529785 5.39E-07 6.2683898 0.135527752 VKTT(ph)PLR ddPTM_HeLa_A486_30min_R1 1 VKTTPLR 7 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VKT(0.259)T(0.741)PLR 88.181 0.0085701 1367800000 724840 741210 420770 240750 670760 762640 754190 781230 567350 797220 TRUE FALSE FALSE 674032.4591 682473.8202 583703.4126 560478.1668 586627.0262 668553.2308 565483.685 603360.9831 616528.3548 597590.923 1.12791616 1.142041811 0.976760841 0.937896051 0.981653174 1.118747299 0.946272213 1.009655535 1.031689624 1 19.18879871 -4.757231733 24.9986869 1.000080299 1.134979044 0.558625321 0.047872769 76.2864344 453220.1984 0.012711316 0.031216398 1.75E-05 4.757231733 0.134898745 VKTTPLRRPTET(ph)NPVT(ph)SNSDEECNETVK ddPTM_HeLa_A486_30min_R1 1 VKTTPLRRPTETNPVTSNSDEECNETVK 28 3 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 VKT(0.109)T(0.123)PLRRPT(0.335)ET(0.434)NPVT(0.39)S(0.343)NS(0.266)DEECNETVK 135.17 1.06E-05 279520000 68217 60562 28027 36496 56634 63666 104040 90677 44715 105580 TRUE FALSE FALSE 63435.34057 55762.84656 38879.80499 84964.53241 49530.43563 55811.53623 78008.09158 70031.82656 48590.9322 79142.08079 0.801537437 0.704591615 0.491265893 1.073569605 0.625841968 0.705206834 0.985671476 0.884887355 0.61397087 1 16.27215738 -14 0.110439345 1.708602777 0.641950682 0.141129214 0.169263307 330.4121057 2.419444938 53.50695678 2.101561511 1.00E-14 14 -1.066652094 VKVDGPRS(ph)PS(ph)YGR ddPTM_HeLa_A485_30min_R1 4 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 VKVDGPRS(0.935)PS(0.935)Y(0.13)GR;VKVDGPRS(1)PS(0.993)Y(0.007)GR;VKVDGPRS(0.998)PS(0.992)Y(0.01)GR;VKVDGPRS(0.999)PS(0.995)Y(0.006)GR ;;; 115.31 0.00013241 73540900000 6242340 7575940 5517900 7342330 8969480 9228920 12024850 13573500 6587300 9766110 TRUE FALSE FALSE 7630926.997 8461880.281 7559200.829 7743422.896 8076447.077 9712131.981 9455642.564 10244577.84 7909310.688 7331598.509 1.040827179 1.154165803 1.031044024 1.056171159 1.101594293 1.324695013 1.289710907 1.397318447 1.078797574 1 22.80569635 -6.136900914 5.866089349 1.246839029 1.074525392 0.263516969 0.11383224 0.263754584 11.54789617 0.036255384 0.036346765 7.30E-07 6.136900914 -0.172313637 VKVDGPRS(ph)PS(ph)YGR ddPTM_HeLa_A486_30min_R1 3 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 VKVDGPRS(1)PS(0.999)Y(0.001)GR;VKVDGPRS(0.994)PS(0.977)Y(0.029)GR;VKVDGPRS(1)PS(0.999)Y(0.001)GR ;; 126.63 1.81E-05 6202900000 2108540 1948840 1243110 900190 2093800 2153560 2673280 2630280 1540810 2738380 TRUE FALSE FALSE 1960742.235 1794406.821 1724475.484 2095687.813 1831176.08 1887875.663 2004397.069 2031422.663 1674368.651 2052671.824 0.955214668 0.874181055 0.84011261 1.020956097 0.892093933 0.919716265 0.976481991 0.989648047 0.815702068 1 20.96907156 -5.239622063 24.99864152 0.942572322 0.888270617 0.139732109 0.062428915 1653.577435 1894694.207 0.016452262 0.028464273 5.76E-06 5.239622063 -0.054301705 VKVDGPRS(ph)PS(ph)YGRS(ph)R ddPTM_HeLa_A485_30min_R1 1 VKVDGPRSPSYGRSR 15 3 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 VKVDGPRS(0.992)PS(0.777)Y(0.238)GRS(0.993)R 56.766 0.026926 3496700000 582560 736520 718060 998540 2292700 1592800 2445800 3797200 1105000 1812900 TRUE FALSE FALSE 712148.4622 822649.6071 983700.275 1053087.712 2064430.738 1676196.545 1923234.85 2865930.746 1326763.364 1360977.394 0.523262521 0.604455012 0.722789577 0.773773111 1.516873643 1.231612334 1.413127696 2.105788648 0.974860692 1 20.37621167 -5.683222176 4.370548069 1.424806162 0.635526372 0.572237884 0.30337273 0.147390829 5.276547133 0.090466059 0.116600852 2.07E-06 5.683222176 -0.78927979 VKVDGPRS(ph)PSY(ph)GRS(ph)R ddPTM_HeLa_A485_30min_R1 1 VKVDGPRSPSYGRSR 15 3 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 VKVDGPRS(0.985)PS(0.373)Y(0.644)GRS(0.998)R 74.214 0.033964 3119400000 225310 318000 333000 409790 896290 618870 995140 1537700 483080 700860 TRUE FALSE FALSE 275429.4322 355187.3338 456190.5573 432175.7901 807052.2205 651273.0762 782520.2095 1160576.664 580029.7249 526148.5004 0.52348231 0.675070505 0.867037646 0.821395081 1.533886764 1.237812283 1.487261123 2.205796773 1.102406877 1 19.00511052 -5.594327696 1.23968412 1.516849435 0.609330052 0.511121809 0.329011088 0.3475166 1.103678772 0.123845879 0.214332403 2.54E-06 5.594327696 -0.907519383 VKVDGPRS(ph)PSY(ph)GRS(ph)R ddPTM_HeLa_A486_30min_R1 1 VKVDGPRSPSYGRSR 15 3 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 VKVDGPRS(0.978)PS(0.484)Y(0.566)GRS(0.971)R 55.209 0.0164 1239900000 1067000 1040700 1293200 1206900 3338000 2051000 2869600 3450300 1234100 1860700 TRUE FALSE FALSE 992208.81 958231.1418 1793961.673 2809724.193 2919316.914 1797968.473 2151595.728 2664742.01 1341072.782 1394768.609 0.711378793 0.687018001 1.286207376 2.014473351 2.093047475 1.289080111 1.542618406 1.910526228 0.961501982 1 20.41159437 -4.883001556 3.777832287 1.598175107 0.695466186 0.438821542 0.372570867 0.185455137 4.944046493 0.098939831 0.230156124 1.31E-05 4.883001556 -0.902708921 VKVDGPRS(ph)PSYGR ddPTM_HeLa_A485_30min_R1 4 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 VKVDGPRS(0.957)PS(0.043)YGR;VKVDGPRS(0.945)PS(0.054)Y(0.001)GR;VKVDGPRS(0.957)PS(0.043)YGR;VKVDGPRS(0.963)PS(0.036)YGR ;;; 152.94 1.97E-08 38918800000 3316870 6246970 5287510 3324340 10961880 9977410 14049710 22706290 5148510 6047720 TRUE FALSE FALSE 4054696.288 6977498.8 7243579.981 3505940.277 9870476.738 10499811.76 11047874.68 17137536.78 6181768.732 4540134.704 0.893078411 1.53684841 1.59545486 0.772210629 2.174049314 2.31266525 2.433380374 3.77467584 1.36158267 1 22.11430367 -5.876969355 6.228385183 2.351624355 1.255823691 0.2812921 0.735325621 0.244899822 12.42976219 0.222133768 0.253154838 1.33E-06 5.876969355 -1.095800663 VKVDGPRS(ph)PSYGR ddPTM_HeLa_A486_30min_R1 7 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 VKVDGPRS(0.982)PS(0.018)YGR;VKVDGPRS(0.983)PS(0.017)YGR;VKVDGPRS(0.994)PS(0.006)YGR;VKVDGPRS(0.995)PS(0.005)YGR;VKVDGPRS(0.983)PS(0.017)YGR;VKVDGPRS(0.984)PS(0.016)YGR;VKVDGPRS(0.993)PS(0.007)YGR ;;;;;; 133.25 6.94E-06 48800630000 7824832 6878026 8115572 5681280 19245580 9091430 15075690 18137640 6163463 10611100 TRUE FALSE FALSE 7276351.684 6332986.17 11258138.82 13226306.96 16831619.9 7969821.801 11303592.91 14008095.31 6697716.935 7954011.493 0.914802762 0.796200279 1.415403892 1.662847353 2.116117121 1.001987715 1.421118503 1.761135916 0.842055225 1 22.92325122 -4.77614602 9.807386956 1.451219922 0.855168707 0.251546756 0.369947681 0.256362978 159.7813483 0.095562995 0.208890064 1.67E-05 4.77614602 -0.596051215 VKVEPSHDASK ddPTM_HeLa_A485_30min_R1 1 VKVEPSHDASK 11 1 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 132.76 0.0004916 37360000 34418 32860 27927 36616 47561 42498 56115 58414 38680 57796 FALSE FALSE TRUE 42074.16536 36702.69116 38258.35944 38616.23936 42825.65984 44723.12957 44125.57183 44087.87491 46442.72121 43388.52086 0.969707299 0.845907868 0.881762242 0.890010505 0.987027421 1.030759489 1.016987234 1.016118412 1.070391898 1 15.40502578 -5.876459621 3.137930352 1.026414816 0.891151221 0.769036717 0.033596575 0.111943114 2.198004367 0.010706291 0.012479417 1.33E-06 5.876459621 -0.135263596 VKVFGWVHR ddPTM_HeLa_A485_30min_R1 1 VKVFGWVHR 9 1 O43776;K7EMQ6;K7EIU7;K7EPK2;K7EQ35;O43776-2 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 105.78 0.0029478 13619000 14760 22606 17513 14087 22605 18727 22702 24343 13307 18359 FALSE FALSE TRUE 18043.31108 25249.57505 23991.78748 14856.53714 20354.36683 19707.51676 17851.53224 18372.84108 15977.59284 13782.43917 1.309152237 1.832010629 1.740750471 1.077932357 1.476833424 1.429900507 1.295237513 1.333061648 1.159271784 1 13.75054361 -6.916150187 0.235550191 0.924554426 1.731110799 0.416208215 0.193741827 2.61682603 0.515043968 0.537846802 0.797091796 1.21E-07 6.916150187 0.806556373 VKVGVNGFGR ddPTM_HeLa_A485_30min_R1 2 VKVGVNGFGR 10 1 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 200.56 1.67E-14 254480000 302390 567620 396470 233490 520460 588120 647120 926580 385740 357230 FALSE FALSE TRUE 369655.6123 633998.2214 543140.7515 246244.9675 468641.175 618913.0538 508857.5255 699334.8022 463154.4798 268179.1353 1.378390649 2.364084814 2.025290859 0.918210759 1.747493049 2.307834474 1.897453823 2.60771518 1.727033981 1 18.03283747 -6.028621624 24.2970452 2.010033896 1.694563247 0.025204898 0.530958377 1452.155202 1232739.099 0.17338564 0.173765044 9.36E-07 6.028621624 -0.315470649 VKVGVNGFGR ddPTM_HeLa_A486_30min_R1 2 VKVGVNGFGR 10 1 P04406 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 174.86 3.03E-09 157160000 341480 275160 189870 84084 306610 233920 303390 298380 194594 363820 FALSE FALSE TRUE 317544.0154 253355.3195 263392.7489 195751.8014 268152.1148 205061.3287 227478.6131 230445.3876 211461.5646 272717.1039 1.164371471 0.929004143 0.965809423 0.717783368 0.983261082 0.751919574 0.834119349 0.844997927 0.775387981 1 18.05704566 -3.475051872 0.928014707 0.839581138 2.152174483 0.5091086 0.09132762 5.744605666 1.352208996 0.027923607 10.7605804 0.000334925 3.475051872 1.312593345 VKVLFVR ddPTM_HeLa_A485_30min_R1 2 VKVLFVR 7 1 O43390-4;O43390;O43390-2;B4DT28;O43390-3;O60506-3;O60506;B7Z645;O60506-5 O43390-4;O60506-3 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q 0 0 ; ; 105.95 0.0072832 34439000 45421 101872 54966 19405.6 63126 94340 102348 177216 41087 28396 FALSE FALSE TRUE 55524.74475 113785.0442 75300.21073 20465.67879 56840.95379 99279.49652 80480.51369 133753.4981 49332.78403 21317.39979 2.604667797 5.337660566 3.532335626 0.960045737 2.666411211 4.657204795 3.775343827 6.274381466 2.314202694 1 14.37974385 -6.247977762 24.20437402 3.944570279 3.062966956 0.009528738 1.657625093 1693.029713 3044116.329 0.551002104 0.54772363 5.65E-07 6.247977762 -0.881603323 VKYETELAMR ddPTM_HeLa_A485_30min_R1 1 VKYETELAMR 10 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 99.539 0.005535 39808000 46678 48449 49754 59866 71617 62655 82957 79812 55601 86873 FALSE FALSE TRUE 57061.36006 54114.6891 68160.07504 63136.32799 64486.56002 65935.51892 65232.55925 60237.98186 66759.6107 65217.15988 0.874943959 0.829761511 1.045124859 0.968093798 0.988797429 1.011014878 1.000236125 0.923652333 1.023650996 1 15.99296399 -4.753689703 24.99998996 0.991910924 0.852352682 0.754189975 0.032551176 78.45485839 253084.7409 0.008036661 0.020428473 1.76E-05 4.753689703 -0.139558242 VLAAVYK ddPTM_HeLa_A485_30min_R1 2 VLAAVYK 7 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;P09972;A0A087WXX2;A0A3B3IS80;P05062 P04075-2 ALDOA;ALDOC;ALDOB Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase B 0 0 ; ; 123.34 0.0093059 224020000 633660 750600 682130 711530 941250 896700 1102800 1188410 715360 1003400 FALSE FALSE TRUE 774615.4809 838376.1406 934478.2728 750399.0822 847535.8451 943649.8254 867177.771 896950.5841 858926.1903 753270.8462 1.028335936 1.112981001 1.240560786 0.996187608 1.12514091 1.252736423 1.151216425 1.190741137 1.140262091 1 19.52280917 -6.007301111 24.89009468 1.162483509 1.100566649 0.062327602 0.084752844 771.5798806 2630393.465 0.026157772 0.028455402 9.83E-07 6.007301111 -0.06191686 VLAAVYK ddPTM_HeLa_A486_30min_R1 1 VLAAVYK 7 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;P09972;A0A087WXX2;A0A3B3IS80;P05062 P04075-2 ALDOA;ALDOC;ALDOB Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase B 0 0 140.79 0.0013105 0 301110 395950 318560 167960 982140 381040 426970 430170 339500 373740 FALSE FALSE TRUE 280003.7439 364573.48 441914.9633 391019.3682 858950.8431 334031.1589 320137.59 332229.6815 368928.1334 280153.0714 0.999466979 1.301336724 1.577405385 1.395734719 3.066005448 1.192316605 1.142723827 1.185886273 1.316880559 1 18.09585578 -6.464577244 24.99999332 1.175513033 1.677631984 0.18978932 0.516775634 491.1446648 210605.2372 0.190534363 0.168035088 3.43E-07 6.464577244 0.502118952 VLAET(ph)PDSFEK ddPTM_HeLa_A486_30min_R1 2 VLAETPDSFEK 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 VLAET(0.859)PDS(0.141)FEK;VLAET(0.818)PDS(0.182)FEK ; 204.85 4.07E-14 424630000 1468870 1540780 896240 632950 1453380 1652880 1817230 1772520 1190500 1819420 TRUE FALSE FALSE 1365909.798 1418682.981 1243288.13 1473539.588 1271083.528 1448964.471 1362539.833 1368955.89 1293693.499 1363825.39 1.001528355 1.040223325 0.911618261 1.080445927 0.931998728 1.062426673 0.999057389 1.003761845 0.948577075 1 20.37922752 -7.685065129 15.37701756 0.974294752 1.003971417 0.051816465 0.050636994 4.430676085 885.4573117 0.031375365 0.011856172 2.07E-08 7.685065129 0.029676666 VLAFLSSVAGDALTR ddPTM_HeLa_A485_30min_R1 1 VLAFLSSVAGDALTR 15 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 128.85 8.89E-05 6244500 7368 10421 9734.4 6870.8 10917 9080.9 10862 11527 8393.1 10375 FALSE FALSE TRUE 9006.986181 11639.6453 13335.55964 7246.134406 9830.065148 9556.361882 8541.244966 8699.985176 10077.51818 7788.703438 1.15641663 1.494426562 1.712166826 0.930338979 1.262092623 1.226951566 1.096619615 1.117000441 1.293863384 1 12.92716747 -5.265790849 24.99977758 1.145136008 1.458345658 0.445213636 0.164234096 342.9947151 1970553.341 0.045542986 0.070303264 5.42E-06 5.265790849 0.31320965 VLAFLSSVAGDALTR ddPTM_HeLa_A486_30min_R1 2 VLAFLSSVAGDALTR 15 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 ; ; 216.03 6.15E-22 7310500 9992.4 11015.7 9661.6 3477.34 12445.1 9156.9 9856.5 9432.4 9529 9785.6 FALSE FALSE TRUE 9291.984361 10142.77581 13402.83027 8095.423255 10884.11951 8027.214779 7390.299449 7284.848428 10354.98139 7335.222066 1.266762516 1.382749659 1.827188072 1.103637106 1.483815952 1.094338345 1.007508618 0.993132636 1.411679333 1 12.84062493 -6.268966723 24.03679551 1.095038595 1.417001934 0.364738998 0.205426365 382.083671 1220089.772 0.071117461 0.063994013 5.38E-07 6.268966723 0.321963339 VLAGDKNFITAEELRR ddPTM_HeLa_A485_30min_R1 1 VLAGDKNFITAEELRR 16 2 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 84.859 0.0041649 10715000 5891.4 7912.6 6327.5 3682.3 13524 11158 11341 19318 6311.7 8010.9 FALSE FALSE TRUE 7201.921605 8837.90974 8668.305559 3883.454725 12177.50307 11742.21563 8917.902703 14580.23021 7578.400296 6013.93006 1.197539967 1.469573083 1.441371195 0.645743247 2.024882723 1.952502858 1.482874362 2.424409673 1.260141076 1 12.55409237 -5.785315258 24.99998815 1.764710931 1.226687109 0.229737137 0.435934921 306.0351269 320442.007 0.128821551 0.146145762 1.64E-06 5.785315258 -0.538023822 VLAPILPDNFS(ph)TPTGSR ddPTM_HeLa_A485_30min_R1 2 VLAPILPDNFSTPTGSR 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 VLAPILPDNFS(0.484)T(0.484)PT(0.016)GS(0.016)R;VLAPILPDNFS(0.494)T(0.494)PT(0.006)GS(0.006)R ; 103.76 0.00025537 96048000 96150 125750 130739 99506 163056 128860 133930 141588 102801 129210 TRUE FALSE FALSE 117538.2358 140455.3686 179104.7966 104941.7608 146821.5721 135606.9103 105314.7614 106863.321 123432.2178 97000.32493 1.21173033 1.44798864 1.846435017 1.081870199 1.513619384 1.398004702 1.085715553 1.101680031 1.272492828 1 16.56570196 -6.726723285 6.626597038 1.123237129 1.428167353 0.358406021 0.197335106 0.209040092 26.73438743 0.076749553 0.058006027 1.88E-07 6.726723285 0.304930224 VLAPILPDNFS(ph)TPTGSR ddPTM_HeLa_A486_30min_R1 1 VLAPILPDNFSTPTGSR 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 VLAPILPDNFS(0.488)T(0.488)PT(0.012)GS(0.012)R 85.837 0.0011488 41536000 46896 65282 58706 23917 83506 53505 71706 63554 53163 68807 TRUE FALSE FALSE 43608.83257 60108.81657 81438.5354 55679.9847 73031.89882 46904.0971 53764.40037 49084.14157 57771.21164 51577.27934 0.845504709 1.165412704 1.578961443 1.079544819 1.41597036 0.909394557 1.042404738 0.951662092 1.120090326 1 15.65444805 -6.277226305 24.97539891 1.004045124 1.226672293 0.239127945 0.189020217 1202.15643 1901842.556 0.066916338 0.05920189 5.28E-07 6.277226305 0.222627169 VLAPILPDNFST(ph)PTGSR ddPTM_HeLa_A485_30min_R1 4 VLAPILPDNFSTPTGSR 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 VLAPILPDNFS(0.048)T(0.951)PT(0.001)GSR;VLAPILPDNFS(0.145)T(0.853)PT(0.001)GSR;VLAPILPDNFS(0.335)T(0.664)PT(0.001)GSR;VLAPILPDNFS(0.009)T(0.99)PTGSR ;;; 276.1 9.91E-59 1976980000 925670 1097430 1211430 848980 1396270 1076580 1159590 1287310 1013260 1110400 TRUE FALSE FALSE 1131582.098 1225764.892 1659588.369 895357.6277 1257252.456 1132948.064 911834.1235 971595.2041 1216611.988 833597.7154 1.357467849 1.470451357 1.990874421 1.07408839 1.50822445 1.359106489 1.093853914 1.165544466 1.459471356 1 19.6689918 -6.021580532 1.010143552 1.197593169 1.54805204 0.257360442 0.237666755 0.759819469 1.666822972 0.121255431 0.140575526 9.52E-07 6.021580532 0.350458871 VLAPILPDNFST(ph)PTGSR ddPTM_HeLa_A486_30min_R1 5 VLAPILPDNFSTPTGSR 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 0 VLAPILPDNFS(0.016)T(0.906)PT(0.062)GS(0.016)R;VLAPILPDNFS(0.031)T(0.562)PT(0.318)GS(0.089)R;VLAPILPDNFS(0.175)T(0.822)PT(0.002)GS(0.001)R;VLAPILPDNFS(0.004)T(0.995)PT(0.001)GSR;VLAPILPDNFS(0.038)T(0.96)PT(0.002)GSR ;;;; 268.92 1.33E-51 1887902000 1084760 1213499 1160468 398318 1411757 1097538 1212242 1265610 1042640 1114505 TRUE FALSE FALSE 1008723.926 1117336.92 1609832.288 927304.4339 1234681.273 962134.9205 908926.2298 977458.2311 1133016.875 835425.6938 1.207437039 1.3374462 1.926960471 1.109978351 1.477906751 1.151670253 1.087979741 1.170012173 1.356215021 1 19.67215199 -6.268471175 24.16305149 1.159726445 1.419642861 0.258839859 0.218605615 517.0968255 1776870.414 0.076313585 0.068794918 5.39E-07 6.268471175 0.259916416 VLAST(ph)IS(ph)T(ph)T(ph)S(ph)TIEFK ddPTM_HeLa_A486_30min_R1 1 VLASTISTTSTIEFK 15 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 5 0 VLAS(0.731)T(0.74)IS(0.74)T(0.74)T(0.74)S(0.666)T(0.642)IEFK 40.179 0.026374 174370000 2830.2 8863.5 26600 299.82 19364 3561.8 3603.9 5608.3 9812.3 2122.1 TRUE FALSE FALSE 2631.817595 8161.12398 36900.23237 697.9961121 16935.18656 3122.38133 2702.166102 4331.412518 10662.83806 1590.712347 1.654489952 5.130483832 23.19730053 0.438794678 10.64629101 1.962882437 1.698714482 2.722938893 6.70318432 1 10.63545726 -6.270100911 23.97453543 2.855300511 8.442703287 0.166107011 6.033797453 695.2158559 1924303.396 2.118388766 1.898759094 5.37E-07 6.270100911 5.587402777 VLAT(ph)EDRSDHLIQTDTVNLHR ddPTM_HeLa_A486_30min_R1 1 VLATEDRSDHLIQTDTVNLHR 21 1 P51151 P51151 RAB9A Ras-related protein Rab-9A 1 0 VLAT(0.512)EDRS(0.488)DHLIQTDTVNLHR 55.063 0.032669 230650000 120450 95344 49930 54591 86746 164440 222490 183340 97024 237710 TRUE FALSE FALSE 112007.077 87788.5942 69264.23317 127090.6069 75865.50781 144153.0647 166820.6487 141597.4843 105434.1184 178185.8688 0.628596857 0.49267989 0.388719003 0.713247396 0.42576613 0.809003911 0.936217052 0.794661694 0.591708642 1 17.4430234 -6.277327427 23.06391367 0.820353379 0.530093023 0.557555032 0.132016508 231.577838 336168.588 0.045766791 0.040531717 5.28E-07 6.277327427 -0.290260357 VLATEDRS(ph)DHLIQTDTVNLHR ddPTM_HeLa_A485_30min_R1 3 VLATEDRSDHLIQTDTVNLHR 21 1 P51151 P51151 RAB9A Ras-related protein Rab-9A 1 0 VLAT(0.023)EDRS(0.977)DHLIQTDTVNLHR;VLAT(0.001)EDRS(0.999)DHLIQTDTVNLHR;VLAT(0.002)EDRS(0.998)DHLIQTDTVNLHR ;; 210.58 3.73E-27 915681000 375932 318133 245519 631437 405880 295804 517430 459185 337089 927940 TRUE FALSE FALSE 459556.7764 355335.887 336346.695 665930.8044 365469.1621 311291.84 406876.8535 346569.1588 404739.6703 696621.6355 0.659693517 0.510084483 0.482825508 0.955943328 0.524630794 0.446859277 0.584071514 0.497499849 0.581003589 1 19.41001575 -10.37133497 3.048157818 1.00505135 0.580286774 0.45266491 0.137702337 65618876.94 82957421.6 2954920.353 0.034527087 4.25E-11 10.37133497 -0.424764576 VLATEDRS(ph)DHLIQTDTVNLHR ddPTM_HeLa_A486_30min_R1 2 VLATEDRSDHLIQTDTVNLHR 21 1 P51151 P51151 RAB9A Ras-related protein Rab-9A 1 0 VLATEDRS(1)DHLIQTDTVNLHR;VLAT(0.001)EDRS(0.999)DHLIQTDTVNLHR ; 258.83 4.24E-59 771570000 311520 283540 269120 136375 362300 430040 507900 442070 302810 476180 TRUE FALSE FALSE 289684.0567 261071.2578 373330.4713 317487.892 316856.9557 376986.0371 380818.048 341420.3113 329057.8146 356941.4286 0.811573086 0.731412038 1.045915216 0.889467757 0.887700139 1.056156576 1.066892262 0.956516347 0.921881822 1 18.44532783 -4.756350848 24.99996491 0.976082984 0.771492502 0.619288281 0.064771874 83.04167465 407970.8912 0.017642538 0.043772708 1.75E-05 4.756350848 -0.204590482 VLCLAVAVGHVK ddPTM_HeLa_A485_30min_R1 1 VLCLAVAVGHVK 12 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 132.91 0.00026089 24159000 25928 21304 21827 35181 30755 24072 26826 30210 20818 44952 FALSE FALSE TRUE 31695.59415 23795.31748 29901.7156 37102.84895 27692.92421 25332.3727 21094.40595 22800.95013 24995.98165 33746.29368 0.939231859 0.705123878 0.886074064 1.099464412 0.820621206 0.750671257 0.625088081 0.675657906 0.74070302 1 15.04244144 -6.119302695 4.036962452 0.730511271 0.897684485 0.206135286 0.129735517 0.335846181 9.377256893 0.044422178 0.044845687 7.60E-07 6.119302695 0.167173214 VLCLAVAVGHVK ddPTM_HeLa_A486_30min_R1 2 VLCLAVAVGHVK 12 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 ; ; 178.22 2.02E-09 55449000 62449 52653 33427 24689.8 49049 43491 57472 50433 44294 68407 FALSE FALSE TRUE 58071.64759 48480.58452 46370.82961 57479.10215 42896.81706 38125.5226 43091.89772 38950.50684 48133.43958 51277.44195 1.132498919 0.945456378 0.904312459 1.120943245 0.836563125 0.743514519 0.84036754 0.759603158 0.938686443 1 15.64603667 -5.788183557 24.08023137 0.834984335 1.011385804 0.421042797 0.097235507 133.6494775 120335.9221 0.029285669 0.033217952 1.63E-06 5.788183557 0.176401469 VLCPINYPLS(ph)PTR ddPTM_HeLa_A486_30min_R1 1 VLCPINYPLSPTR 13 0 Q96LD4-2;Q96LD4 Q96LD4-2 TRIM47 Tripartite motif-containing protein 47 1 0 VLCPINYPLS(0.986)PT(0.014)R 88.087 0.0017803 180000000 47785 42916 37246 14710 59249 37627 52078 46597 40757 53172 TRUE FALSE FALSE 44435.51826 39515.17986 51668.64868 34245.6234 51817.43795 32984.9633 39047.53358 35987.88031 44289.84958 39857.38511 1.114862858 0.991414257 1.296338145 0.859203967 1.300071186 0.827574694 0.979681268 0.90291624 1.11120811 1 15.28255944 -6.279095452 24.92458439 0.959171171 1.10181267 0.218162507 0.139301427 1259.326205 1777749.652 0.045681848 0.040375307 5.26E-07 6.279095452 0.142641499 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDAS(ph)R ddPTM_HeLa_A485_30min_R1 1 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDAS(1)R 57.829 0.010578 80812000 35657 28818 25861 21483 30689 25017 28452 32086 19736 25982 TRUE FALSE FALSE 43588.77663 32188.01442 35428.06007 22656.56189 27633.4954 26326.85144 22372.99777 24216.85819 23696.83417 19505.16556 2.234729897 1.650230259 1.816342443 1.161567269 1.416727036 1.349737399 1.14702937 1.241561273 1.214900437 1 14.25156862 -1 0.375869194 1.134700909 16.08360814 0.845275056 0.14019661 23.55336763 0.323725902 0.103353673 255.4950554 0.1 1 14.94890723 up VLDEEGS(ph)ER ddPTM_HeLa_A486_30min_R1 5 VLDEEGSER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER;VLDEEGS(1)ER ;;;; 209.8 3.45E-10 4983000000 7670660 7119360 3504520 1069935 3237300 4622520 3713580 3364720 5265850 6906250 TRUE FALSE FALSE 7132986.345 6555195.985 4861563.998 2490862.752 2831247.647 4052240.481 2784403.006 2598646.707 5722298.118 5176880.048 1.377854283 1.266244519 0.93909149 0.481151336 0.546902308 0.782757268 0.537853491 0.50197159 1.105356521 1 22.30365146 -4.875255328 2.850361264 0.677051794 1.345346465 0.586329769 0.203223904 0.163685298 2.641136448 0.054133593 0.140755908 1.33E-05 4.875255328 0.668294671 VLDFEHFLPMLQTVAK ddPTM_HeLa_A485_30min_R1 3 VLDFEHFLPMLQTVAK 16 0 F8VPF3;G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2;F8VZU9;F8W180 F8VPF3;G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 0 ;; ;; 254.56 7.62E-43 124812000 170408 195670 163024 175216 240520 220432 266380 284773 174789 256333 FALSE FALSE TRUE 208314.6717 218551.9044 223333.3616 184787.6064 216572.9843 231973.4787 209465.7369 214931.9752 209867.549 192433.9006 1.08252585 1.135724546 1.160571817 0.960265348 1.125440911 1.205470959 1.088507463 1.11691326 1.090595516 1 17.55400345 -8.212222541 3.123537513 1.000004578 1.110008778 0.227332253 0.060222973 1.999103538 27.11914525 0.059275816 0.015764682 6.13E-09 8.212222541 0.110004199 VLDFEHFLPMLQTVAK ddPTM_HeLa_A486_30min_R1 4 VLDFEHFLPMLQTVAK 16 0 F8VPF3;G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2;F8VZU9;F8W180 F8VPF3;G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 0 ;;; ;;; 228.51 1.38E-25 175450000 247764 282127 209080 114268 324605 284758 328804 332874 250305 320709 FALSE FALSE TRUE 230397.0231 259770.229 290041.3754 266021.6788 283890.0141 249627.4532 246533.7615 257085.8568 272001.6389 240401.3789 0.958384782 1.080568798 1.206487985 1.106573015 1.180900107 1.038377792 1.025508932 1.069402588 1.131447915 1 17.87508565 -6.329685967 24.99999309 1.055570162 1.110688871 0.127359962 0.069616003 400.7715087 146808.5352 0.025493464 0.022483086 4.68E-07 6.329685967 0.055118709 VLDFEHFLPMLQTVAK(ac)NK ddPTM_HeLa_A486_30min_R1 2 VLDFEHFLPMLQTVAKNK 18 1 F8VPF3;G3V1Y7;J3KND3;P60660;F8W1R7;G3V1V0;B7Z6Z4;G8JLA2;P60660-2;F8VZU9;F8W180 F8VPF3;G3V1Y7;G8JLA2 MYL6 Myosin light polypeptide 6 0 1 ; VLDFEHFLPMLQTVAK(1)NK;VLDFEHFLPMLQTVAK(1)NK 138.55 1.65E-09 5346300 4294 6172.2 6047.9 2480.56 8557.8 6733.1 8013.2 8024.8 6156.1 7251.2 FALSE TRUE FALSE 3993.012774 5683.092393 8389.808848 5774.869041 7484.400926 5902.438579 6008.212605 6197.72822 6689.715705 5435.452323 0.734623825 1.045560159 1.543534622 1.062444981 1.376960091 1.085914884 1.105374907 1.140241484 1.230756027 1 12.40818438 -4.368323107 3.920552563 1.197860474 0.732468535 0.442830542 0.154723124 0.193013076 4.712942931 0.037437257 0.197068362 4.28E-05 4.368323107 -0.465391939 VLDPFTIK(ac)PLDR ddPTM_HeLa_A486_30min_R1 1 VLDPFTIKPLDR 12 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 1 VLDPFTIK(1)PLDR 121.9 0.0043191 11731000 6578.8 9185.3 10146 2337.4 7396.9 8623.6 9404.3 10534 7370.5 12139 FALSE TRUE FALSE 6117.660093 8457.423376 14074.80292 5441.585326 6469.111829 7559.70791 7051.244671 8135.638156 8009.380874 9099.315388 0.67232092 0.929457109 1.546798008 0.5980214 0.710944896 0.830799636 0.774920351 0.894093435 0.880217965 1 13.15154229 VLDPFTIKPLDR ddPTM_HeLa_A485_30min_R1 2 VLDPFTIKPLDR 12 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 137.95 1.20E-05 1108240000 1129930 1264020 1192100 1373670 1525570 1429340 1766000 1858710 1251280 1832390 FALSE FALSE TRUE 1381279.03 1411836.143 1633107.397 1448710.114 1373678.894 1504178.032 1388679.673 1402858.458 1502400.419 1375608.896 1.004121909 1.026335427 1.187188744 1.05314099 0.998596984 1.093463438 1.009501812 1.019809092 1.0921712 1 20.39163892 -5.516284015 24.92677848 1.037051811 1.076633611 0.082040837 0.054898665 726.2241408 2744994.139 0.016259991 0.021855633 3.05E-06 5.516284015 0.0395818 VLDPFTIKPLDR ddPTM_HeLa_A486_30min_R1 2 VLDPFTIKPLDR 12 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 139.19 7.79E-06 1259100000 3115300 3297500 2458900 1484390 4156600 3315800 3561500 3705900 2931600 3714300 FALSE FALSE TRUE 2896933.557 3036194.091 3411051.932 3455734.937 3635240.469 2906730.309 2670375.03 2862147.469 3185713.448 2784215.104 1.040484822 1.090502701 1.225139511 1.241188201 1.305660782 1.044003498 0.959112328 1.027990785 1.144205217 1 21.40883925 -6.414730991 9.472378451 1.030418358 1.181293845 0.438050179 0.082471259 0.393504977 31.84277199 0.031749073 0.027974433 3.85E-07 6.414730991 0.150875487 VLDPFTIKPLDRK ddPTM_HeLa_A485_30min_R1 2 VLDPFTIKPLDRK 13 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 196.5 1.00E-18 843420000 504870 580970 388180 513980 637740 757850 987130 1286920 500940 711340 FALSE FALSE TRUE 617176.5897 648909.3877 531783.9355 542057.4259 574244.3664 797529.8541 776221.6114 971300.8522 601474.0631 534016.0292 1.155726712 1.215149644 0.995820175 1.015058343 1.075331703 1.49345677 1.453554891 1.818860856 1.126322114 1 19.02652352 -6.256657937 24.18455957 1.434312485 1.088738193 0.28823719 0.216781161 273.5012925 1383372.394 0.070160957 0.067959441 5.54E-07 6.256657937 -0.345574292 VLDPFTIKPLDRK ddPTM_HeLa_A486_30min_R1 1 VLDPFTIKPLDRK 13 2 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 143.98 8.22E-08 327030000 274020 244700 146960 314370 343510 255200 333800 371160 182190 376290 FALSE FALSE TRUE 254812.613 225309.0808 203866.8477 731869.2474 300423.7727 223716.0187 250279.7094 286654.9704 197982.3759 282064.5348 0.90338409 0.798785572 0.722766681 2.594687234 1.065088785 0.793137708 0.887313641 1.016274416 0.701904534 1 18.10566576 -5.998036331 24.99999614 0.886539091 1.265012245 0.111788521 0.498269709 158.9491443 2023568.356 0.164603948 0.185408106 1.00E-06 5.998036331 0.378473153 VLDSGAPIK(ac)IPVGPETLGR ddPTM_HeLa_A485_30min_R1 2 VLDSGAPIKIPVGPETLGR 19 1 P06576;H0YH81;F8W079 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 1 ; VLDSGAPIK(1)IPVGPETLGR;VLDSGAPIK(1)IPVGPETLGR 166.9 7.56E-14 37164000 21573.3 29211 31873 25193 31378 28912 37552 36856 24649.5 44176 FALSE TRUE FALSE 26372.20616 32626.97235 43664.14905 26569.2298 28253.89615 30425.78761 29528.70843 27817.00821 29596.42855 33163.7362 0.795212156 0.983814735 1.316623338 0.801153092 0.851951541 0.917441492 0.890391488 0.838777876 0.892433481 1 15.01731893 VLDSVEAGDT(ph)TPPTKR ddPTM_HeLa_A485_30min_R1 2 VLDSVEAGDTTPPTKR 16 1 Q8IZ21-3 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 VLDSVEAGDT(0.603)T(0.396)PPTKR;VLDSVEAGDT(0.583)T(0.392)PPT(0.025)KR ; 108.49 0.00019009 609130000 276870 303900 261360 338260 347310 345110 429040 510430 281070 481800 TRUE FALSE FALSE 338458.7763 339438.4614 358047.9401 356738.2873 312730.5969 363179.426 337372.0991 385246.2422 337478.1709 361696.1269 0.935754494 0.93846308 0.989913669 0.986292804 0.864622465 1.004100954 0.932750102 1.065110223 0.933043364 1 18.46441862 VLDSVEAGDT(ph)TPPTKR ddPTM_HeLa_A486_30min_R1 1 VLDSVEAGDTTPPTKR 16 1 Q8IZ21-3 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 VLDSVEAGDT(0.537)T(0.463)PPT(0.001)KR 130.11 1.39E-05 206770000 243070 227350 159080 77051 254610 214260 269020 294230 193430 285140 TRUE FALSE FALSE 226032.0482 209333.958 220680.0363 179378.6219 222674.4397 187826.7796 201708.3506 227240.252 210196.6681 213739.0881 1.057513861 0.979390152 1.03247393 0.839241075 1.041804949 0.878766637 0.943712975 1.063166565 0.983426429 1 17.70549124 -9.703832766 5.511031549 1.000000002 0.977560176 0.006065695 0.071372045 1.35E-09 3.66E-10 0.067604958 0.01639661 1.98E-10 9.703832766 -0.022439825 VLDSVEAGDTT(ph)PPTKR ddPTM_HeLa_A486_30min_R1 1 VLDSVEAGDTTPPTKR 16 1 Q8IZ21-3 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 VLDSVEAGDT(0.172)T(0.825)PPT(0.003)KR 118.46 7.45E-05 334280000 179170 157810 121220 56367 188650 160230 186050 184370 124990 186710 TRUE FALSE FALSE 166611.1082 145304.5609 168159.6304 131225.2246 164987.7579 140462.4517 139498.3222 142392.9758 135824.2338 139956.6007 1.190448377 1.038211561 1.20151268 0.937613688 1.178849422 1.003614342 0.996725567 1.017408075 0.970473941 1 17.09462 -4.908167685 0.351272874 0.978597136 1.226762269 0.348276225 0.075216498 4.811702923 0.667370358 0.072274096 0.488553188 1.24E-05 4.908167685 0.248165133 VLDTSSLTQS(ph)APAS(ph)PTNK ddPTM_HeLa_A485_30min_R1 3 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 2 0 VLDTSSLT(0.042)QS(0.958)APAS(1)PTNK;VLDTSSLT(0.03)QS(0.97)APAS(1)PTNK;VLDTSSLT(0.002)QS(0.998)APAS(1)PTNK ;; 380.17 4.65E-130 1277900000 1130710 984780 822020 1460360 1396800 1012440 1573980 1369760 918390 1663360 TRUE FALSE FALSE 1382232.539 1099941.455 1126119.405 1540135.769 1257729.688 1065449.793 1237686.315 1033824.212 1102702.449 1248714.964 1.106923981 0.880858712 0.901822624 1.233376562 1.0072192 0.853236987 0.991168001 0.827910486 0.88306978 1 20.25201277 -6.164076376 6.837997467 0.905623594 1.02363169 0.22804494 0.10572643 0.415357029 25.07638856 0.036085878 0.036114407 6.85E-07 6.164076376 0.118008096 VLDTSSLTQS(ph)APAS(ph)PTNK ddPTM_HeLa_A486_30min_R1 3 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 2 0 VLDTSSLT(0.001)QS(0.999)APAS(1)PTNK;VLDTSSLT(0.053)QS(0.947)APAS(1)PTNK;VLDTSSLT(0.001)QS(0.999)APAS(1)PTNK ;; 377.42 1.17E-129 1344290000 1669220 1712800 1043380 744610 1658450 1853940 2254110 2142720 1288540 2354000 TRUE FALSE FALSE 1552216.298 1577071.49 1447404.679 1733489.711 1450431.737 1625219.732 1690107.836 1654869.431 1400231.685 1764543.078 0.87967039 0.893756299 0.820271659 0.982401468 0.82198715 0.92104282 0.957816138 0.937845866 0.79353783 1 20.75086322 -6.417261092 22.12392974 0.920420658 0.881685363 0.096606581 0.064624952 35.4490701 7397.804928 0.021996368 0.019398948 3.83E-07 6.417261092 -0.038735295 VLDTSSLTQSAPAS(ph)PTNK ddPTM_HeLa_A485_30min_R1 4 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK ;;; 407.94 4.98E-163 2493530000 1940280 1843860 1393730 2422890 2298780 1912020 2560470 2379960 1756370 3221430 TRUE FALSE FALSE 2371888.592 2059483.388 1909328.725 2555246.346 2069905.392 2012130.411 2013404.667 1796271.078 2108857.349 2418386.787 0.980773053 0.85159388 0.789505109 1.056591261 0.855903366 0.832013482 0.832540385 0.74275591 0.872009953 1 21.20561357 -5.979266593 24.99771467 0.838953958 0.911811456 0.091027562 0.089818588 507.9017093 612360.6555 0.027433882 0.031104237 1.05E-06 5.979266593 0.072857499 VLDTSSLTQSAPAS(ph)PTNK ddPTM_HeLa_A486_30min_R1 4 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQSAPAS(0.993)PT(0.007)NK;VLDTSSLTQSAPAS(1)PTNK ;;; 474.43 2.89E-228 2761930000 2299340 2262600 1330670 949300 2121550 2359590 2751360 2656560 1729150 2996670 TRUE FALSE FALSE 2138168.14 2083303.336 1845941.061 2210018.375 1855445.416 2068487.776 2062940.627 2051719.28 1879034.114 2246284.327 0.951868877 0.927444184 0.821775337 0.983855137 0.826006483 0.920848599 0.918379122 0.913383607 0.83650769 1 21.09910912 VLEDEEGS(ph)KDIELSDDPYDCIR ddPTM_HeLa_A485_30min_R1 4 VLEDEEGSKDIELSDDPYDCIR 22 1 Q15024 Q15024 EXOSC7 Exosome complex component RRP42 1 0 VLEDEEGS(1)KDIELSDDPYDCIR;VLEDEEGS(1)KDIELSDDPYDCIR;VLEDEEGS(1)KDIELSDDPYDCIR;VLEDEEGS(1)KDIELSDDPYDCIR ;;; 202.17 3.76E-27 579520000 462266 353160 311064 973726 626476 384307 713855 589761 435360 1208128 TRUE FALSE FALSE 565095.4769 394458.9899 426139.5181 1026918.186 564101.8497 404428.7203 561334.0476 445121.19 522732.7586 906963.9235 0.623062795 0.43492247 0.469852777 1.132259133 0.621967242 0.445914892 0.618915519 0.490781583 0.576354522 1 19.79068564 -10.10038788 3.936832936 1.000104772 0.601667838 0.281287442 0.191067828 58983199.58 98975826.8 84389.95211 0.048892996 7.94E-11 10.10038788 -0.398436934 VLEDEEGS(ph)KDIELSDDPYDCIR ddPTM_HeLa_A486_30min_R1 2 VLEDEEGSKDIELSDDPYDCIR 22 1 Q15024 Q15024 EXOSC7 Exosome complex component RRP42 1 0 VLEDEEGS(1)KDIELSDDPYDCIR;VLEDEEGS(1)KDIELSDDPYDCIR ; 149.99 6.23E-10 201332000 171863 265960 134764 206650 244970 325860 432360 388520 210760 386710 TRUE FALSE FALSE 159816.2912 244884.361 186948.2299 481091.6435 214243.5783 285658.7063 324178.955 300062.4773 229028.8465 289875.2989 0.551327732 0.844792095 0.644926389 1.659650357 0.739088771 0.98545377 1.118339355 1.035143313 0.790094387 1 18.14507288 VLES(ph)PENK ddPTM_HeLa_A486_30min_R1 2 VLESPENK 8 0 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 VLES(1)PENK;VLES(1)PENK ; 129.88 0.00055529 246120000 358460 343320 208920 163710 330750 371770 449290 423610 263140 485840 TRUE FALSE FALSE 333333.8051 316114.0729 289819.4191 381125.1534 289264.2509 325904.7973 336872.8899 327163.2503 285949.1871 364182.5017 0.915293304 0.868010054 0.795808194 1.046522421 0.794283771 0.894894169 0.925011192 0.898349725 0.785181017 1 18.47430208 -10.1013518 4.399597762 1.000010195 0.882145326 0.188967662 0.074267659 95548479.18 4.430559656 12691.04991 0.017092671 7.92E-11 10.1013518 -0.117864869 VLES(ph)PR ddPTM_HeLa_A485_30min_R1 3 VLESPR 6 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 VLES(1)PR;VLES(1)PR;VLES(1)PR ;; 98.009 0.012867 1626720000 1221640 1525280 1486680 1282860 1876760 1464570 1762420 1640220 1381530 1761850 TRUE FALSE FALSE 1493389.603 1703648.228 2036664.798 1352939.393 1689903.185 1541252.621 1385864.569 1237953.473 1658790.399 1322653.219 1.12908628 1.28805359 1.539832791 1.022898046 1.277661567 1.165273405 1.047791325 0.935962242 1.254138556 1 20.33500343 -6.267136779 1.121824776 1.052745908 1.281919694 0.269829 0.145810097 0.641022146 1.675102639 0.07737755 0.069427547 5.41E-07 6.267136779 0.229173787 VLES(ph)PR ddPTM_HeLa_A486_30min_R1 3 VLESPR 6 0 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 VLES(1)PR;VLES(1)PR;VLES(1)PR ;; 90.37 0.015691 2636530000 2618390 3080050 2802620 1003550 3579170 2770740 3112450 3214180 2460280 2717780 TRUE FALSE FALSE 2434854.382 2835975.621 3887869.521 2336315.117 3130237.124 2428914.27 2333682.09 2482381.379 2673539.051 2037230.198 1.195178819 1.392074211 1.908409528 1.146809584 1.536516161 1.19226304 1.14551713 1.218508042 1.312340183 1 20.95817758 -6.277934796 21.43897103 1.185619199 1.443569867 0.283983655 0.207455592 178.6557312 232195.0036 0.07264972 0.064372832 5.27E-07 6.277934796 0.257950668 VLES(ph)PRK ddPTM_HeLa_A485_30min_R1 4 VLESPRK 7 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 VLES(1)PRK;VLES(1)PRK;VLES(1)PRK;VLES(1)PRK ;;; 83.948 0.0055164 790930000 837810 728110 640930 993820 1104810 866410 1192740 979650 771300 1462600 TRUE FALSE FALSE 1024177.944 813256.1308 878036.6783 1048109.87 994811.2372 911773.8879 937901.3552 739389.3015 926092.8352 1098000.737 0.932766172 0.740669932 0.799668569 0.954562082 0.906020555 0.830394605 0.854190096 0.673395997 0.843435531 1 20.06644759 -9.037292479 12.43249412 1 0.834241543 0.265749265 0.081028304 0 0 0.081399377 0.019742249 9.18E-10 9.037292479 -0.165758457 VLES(ph)PRK ddPTM_HeLa_A486_30min_R1 3 VLESPRK 7 1 E7EPJ7;O75962-4;O75962;O75962-5 E7EPJ7 TRIO Triple functional domain protein 1 0 VLES(1)PRK;VLES(1)PRK;VLES(1)PRK ;; 95.502 0.0032706 831660000 501710 565000 366819 277881 621090 604180 761750 730020 427210 644390 TRUE FALSE FALSE 466542.7198 520227.3423 508861.1406 646921.0113 543187.1008 529642.4145 571152.093 563810.3822 464240.9068 483030.5497 0.965865865 1.077007122 1.053476102 1.339296265 1.124539848 1.096498792 1.18243472 1.167235452 0.961100508 1 18.88175491 -10.05742354 13.5417743 1.000000011 1.115966245 0.081919497 0.104552249 0 0 0.102630865 0.024891641 8.76E-11 10.05742354 0.115966233 VLFSADEDEITIGAEK ddPTM_HeLa_A486_30min_R1 1 VLFSADEDEITIGAEK 16 0 Q08AT0;Q96LD1;Q96LD1-2 Q08AT0 SGCZ Zeta-sarcoglycan 0 0 74.678 0.010603 35915000 32126 76453 69093 36440 108160 93508 108040 104090 72715 78095 FALSE FALSE TRUE 29874.1333 70394.58584 95847.65997 84834.16158 94593.56425 81971.93368 81007.24927 80390.97927 79017.99475 58539.50369 0.510324335 1.202514224 1.637315897 1.449178012 1.615892829 1.400284056 1.383804853 1.373277432 1.349823449 1 15.83712289 -4.30981479 3.191157672 1.42353241 0.424193145 0.717353735 0.166706543 0.141318791 2.331708291 0.040418715 0.327771428 4.90E-05 4.30981479 -0.999339265 VLGDHLLLDPTHELPPYT(ph)PPPMLS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 2 0 VLGDHLLLDPTHELPPY(0.004)T(0.996)PPPMLS(1)PVR 106.3 0.0002626 30156000 12013 15728 15861 12298 18579 14678 17054 16364 10514 14395 TRUE FALSE FALSE 14685.25041 17567.25278 21728.64393 12969.8086 16729.20953 15446.51738 13410.27358 12350.70334 12624.06336 10806.59142 1.358916039 1.625605346 2.010684321 1.200175716 1.548056077 1.429360728 1.240934635 1.14288612 1.168181795 1 13.39962392 -6.784805844 0.66947203 1.028445624 1.617904521 0.518405684 0.194535634 0.606055503 0.541484078 0.172962128 0.115053784 1.64E-07 6.784805844 0.589458897 VLGDHLLLDPTHELPPYT(ph)PPPMLS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 2 0 VLGDHLLLDPT(0.002)HELPPY(0.092)T(0.909)PPPMLS(0.997)PVR 48.831 0.021663 24187000 11045 13422 12884 4274.9 16799 12009 13494 13784 11994 13672 TRUE FALSE FALSE 10270.80254 12358.39184 17873.02985 9952.183241 14691.91278 10527.45168 10117.65848 10645.6841 13033.64958 10248.44221 1.002181827 1.205880034 1.743975277 0.971092293 1.433575218 1.027224574 0.987238672 1.038761197 1.271768851 1 13.32311701 -6.28430481 24.22353112 1.062561207 1.277281212 0.183747146 0.217239729 941.7955475 997729.6459 0.076048113 0.067117247 5.20E-07 6.28430481 0.214720005 VLGDHLLLDPTHELPPYTPPPMLS(ph)PVR ddPTM_HeLa_A485_30min_R1 3 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 VLGDHLLLDPTHELPPYTPPPMLS(1)PVR;VLGDHLLLDPTHELPPYTPPPMLS(1)PVR;VLGDHLLLDPTHELPPYTPPPMLS(1)PVR ;; 121.09 4.37E-05 399309000 261697 311827 332575 259292 347091 316625 393551 408813 276165 352106 TRUE FALSE FALSE 319910.5948 348292.4551 455608.3321 273456.4654 312533.4013 333202.9954 309465.6138 308550.9708 331588.7824 264332.4542 1.210258482 1.317630316 1.72361859 1.034517181 1.182349713 1.260545158 1.170743921 1.167283721 1.254438405 1 18.01199404 -7.269018127 0.124896277 0.827198028 1.562231448 0.228237449 0.165298467 10.22310433 1.258189561 3.151614636 3.455490377 5.38E-08 7.269018127 0.735033419 VLGDHLLLDPTHELPPYTPPPMLS(ph)PVR ddPTM_HeLa_A486_30min_R1 3 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 VLGDHLLLDPTHELPPYTPPPMLS(1)PVR;VLGDHLLLDPTHELPPY(0.015)T(0.093)PPPMLS(0.892)PVR;VLGDHLLLDPTHELPPYTPPPMLS(1)PVR ;; 131.1 3.89E-06 380022000 176645 207161 183984 71191 226061 187193 208269 207055 174355 208797 TRUE FALSE FALSE 164263.0977 190744.8079 255227.5321 165736.2458 197706.3214 164099.0309 156157.8934 159913.0965 189468.2318 156512.8722 1.049518135 1.218716424 1.630712724 1.058930448 1.26319528 1.048469871 0.997731951 1.021724886 1.210560059 1 17.25592179 -6.076261857 1.775930108 1.052443888 1.272141578 0.241124079 0.161366072 0.512003022 3.230142602 0.06427659 0.067064989 8.39E-07 6.076261857 0.21969769 VLGLVLLR ddPTM_HeLa_A485_30min_R1 1 VLGLVLLR 8 0 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 148.53 0.00058126 62391000 59874 67209 82328 64422 84246 61272 87732 75720 59927 93647 FALSE FALSE TRUE 73192.76474 75068.50791 112784.5532 67941.21073 75858.17243 64480.10718 68987.3415 57149.55128 71953.79922 70302.52635 1.041111444 1.067792465 1.604274541 0.96641208 1.079024843 0.917180513 0.981292495 0.812908927 1.023488101 1 16.10128891 -5.444929445 24.9999955 0.963557083 1.231501891 0.382148556 0.156659368 120.2288425 38559.05496 0.044281219 0.06567965 3.59E-06 5.444929445 0.267944808 VLGRS(ph)PLTILQDDNS(ph)PGTLTLR ddPTM_HeLa_A485_30min_R1 2 VLGRSPLTILQDDNSPGTLTLR 22 1 Q99618;J3KMY0 Q99618 CDCA3 Cell division cycle-associated protein 3 2 0 VLGRS(1)PLTILQDDNS(0.999)PGT(0.001)LTLR;VLGRS(0.999)PLT(0.001)ILQDDNS(0.994)PGT(0.006)LTLR ; 216.28 1.01E-35 132561000 55213 92585 72711 54681 147470 107600 132990 192238 79581 92265 TRUE FALSE FALSE 67494.94137 103412.0104 99609.82466 57668.08457 132787.369 113233.7696 104575.6001 145091.3291 95552.17674 69265.03351 0.97444465 1.492990115 1.438096823 0.83257138 1.917090952 1.63478979 1.509789208 2.094726902 1.379515347 1 16.07983961 -5.771471452 24.99955283 1.642352082 1.224671089 0.249401633 0.333669839 270.8963693 675061.7455 0.098645345 0.113141357 1.69E-06 5.771471452 -0.417680993 VLGRS(ph)PLTILQDDNS(ph)PGTLTLR ddPTM_HeLa_A486_30min_R1 1 VLGRSPLTILQDDNSPGTLTLR 22 1 Q99618;J3KMY0 Q99618 CDCA3 Cell division cycle-associated protein 3 2 0 VLGRS(0.964)PLT(0.036)ILQDDNS(0.955)PGT(0.043)LT(0.002)LR 185.79 1.54E-19 47773000 35512 30198 44052 20250 78658 42994 51509 55888 35313 42553 TRUE FALSE FALSE 33022.79218 27805.0005 61110.11415 47143.02338 68791.98018 37689.83741 38620.90339 43163.52243 38373.95927 31897.45183 1.035279945 0.871699741 1.915830596 1.477955783 2.156660681 1.181593991 1.210783344 1.353196571 1.203041531 1 14.96115356 -7.722277632 0.918870576 1.02359483 1.450190389 0.117365377 0.364591443 1.272364041 2.253368639 0.367605049 0.133585497 1.90E-08 7.722277632 0.426595559 VLGS(ph)EGEEEDEALS(ph)PAK ddPTM_HeLa_A485_30min_R1 2 VLGSEGEEEDEALSPAK 17 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK ; 316.02 6.98E-79 1878580000 1761040 1347900 1044520 3126800 2028890 1544570 2788000 2087060 1404220 3845000 TRUE FALSE FALSE 2152777.272 1505525.18 1430931.414 3297609.167 1826886.588 1625441.297 2192321.024 1575205.263 1686034.074 2886512.262 0.745805691 0.521572418 0.495730239 1.14241994 0.632904496 0.56311602 0.759505183 0.545712306 0.584107712 1 21.46089592 -10.10776068 4.742110866 1.000019636 0.665693606 0.236503312 0.180220442 3.79E-05 7.14E-06 0.17692953 0.042909196 7.80E-11 10.10776068 -0.334326029 VLGS(ph)EGEEEDEALS(ph)PAK ddPTM_HeLa_A486_30min_R1 4 VLGSEGEEEDEALSPAK 17 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 2 0 VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK ;;; 283.01 2.06E-59 3399860000 1968420 2068760 895159 1241936 1833470 2408790 3117570 2778570 1553594 3467380 TRUE FALSE FALSE 1830443.923 1904823.923 1241788.538 2891289.772 1603499.096 2111617.981 2337521.012 2145950.267 1688260.779 2599125.479 0.704253772 0.73287109 0.477771677 1.112408691 0.616937931 0.812434027 0.899349043 0.825643196 0.649549547 1 21.30959485 -14 0.048186965 1.843948478 0.320624613 0.164219124 0.163304891 1121.188147 3.994347336 127.6923697 30.0661893 1.00E-14 14 -1.523323865 VLGS(ph)EGEEEDEALSPAK ddPTM_HeLa_A485_30min_R1 4 VLGSEGEEEDEALSPAK 17 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK ;;; 312.09 4.61E-79 2256760000 859199 854041 661149 1041607 1125065 1040590 1315350 1361701 872602 1591607 TRUE FALSE FALSE 1050324.853 953913.6658 905735.5278 1098507.353 1013049.578 1095073.683 1034314.727 1027741.695 1047725.217 1194848.666 0.879044253 0.798355217 0.758033677 0.919369443 0.847847604 0.916495716 0.865644961 0.860143819 0.87686855 1 20.18839647 -14 0.126721696 1.474528604 0.793979961 0.508346484 0.044267128 124.9619093 1.006716057 15.09085756 0.376481616 1.00E-14 14 -0.680548643 VLGS(ph)EGEEEDEALSPAK ddPTM_HeLa_A486_30min_R1 4 VLGSEGEEEDEALSPAK 17 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK ;;; 352.05 2.61E-105 3393500000 1681510 1771690 1128430 726818 1853690 1930570 2159410 2243680 1451290 2280940 TRUE FALSE FALSE 1563644.832 1631294.832 1565388.316 1692069.035 1621182.915 1692395.902 1619102.778 1732843.043 1577088.986 1709777.778 0.91453103 0.954097575 0.915550744 0.989642664 0.948183405 0.989833839 0.946966793 1.013490213 0.92239413 1 20.7053774 -1 0.29855635 0.980581711 0.444041282 0.288683455 0.029251163 66.3806508 0.946016323 0.02756033 18.99154722 0.1 1 -0.53654043 VLGSEGEEEDEALS(ph)PAK ddPTM_HeLa_A485_30min_R1 1 VLGSEGEEEDEALSPAK 17 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 VLGSEGEEEDEALS(1)PAK 357.93 1.27E-105 534130000 137290 109510 99568 257810 171770 139600 236470 160940 119130 303540 TRUE FALSE FALSE 167829.6869 122316.2419 136402.3466 271893.5075 154667.9757 146909.2401 185946.2527 121469.2127 143038.2983 227873.0642 0.736505157 0.536773586 0.598589162 1.19317967 0.678746197 0.644697699 0.816008041 0.533056476 0.627710426 1 17.79787088 VLGSEGEEEDEALS(ph)PAK ddPTM_HeLa_A486_30min_R1 4 VLGSEGEEEDEALSPAK 17 0 P18858-2;P18858;M0R0Q7;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 P18858-2 LIG1 DNA ligase 1;DNA ligase 1 0 VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK ;;; 299.65 1.73E-69 1366040000 1008802 1000073 472888 563192 894037 1242274 1597214 1358330 858730 1749560 TRUE FALSE FALSE 938090.1893 920823.5733 656002.898 1311139.438 781898.5429 1089014.864 1197574.164 1049067.911 933165.4078 1311458.788 0.715302835 0.702136873 0.500208549 0.999756492 0.596205195 0.830384358 0.913161873 0.79992442 0.711547642 1 20.32274104 -13.99999986 0.036436129 2.230629568 9.91E-08 0.277263257 0.132866742 1313.012852 3.576340922 187.4642875 62.57212868 1.00E-14 13.99999986 -2.230629469 VLHEAEGHIVTCETNTGEVYR ddPTM_HeLa_A485_30min_R1 1 VLHEAEGHIVTCETNTGEVYR 21 0 P62318;P62318-2;H3BT13 P62318 SNRPD3 Small nuclear ribonucleoprotein Sm D3 0 0 49.592 0.028212 16273000 4840 5982.8 6852.9 7025.8 9733.6 6887 8433.1 8914.8 7485 11597 FALSE FALSE TRUE 5916.641302 6682.436417 9388.072883 7409.601664 8764.488607 7247.592671 6631.299293 6728.431322 8987.170844 8706.081327 0.679598671 0.767559613 1.078335078 0.851083442 1.006708791 0.832474726 0.761685889 0.772842691 1.032286571 1 13.08780778 -13.99999527 0.017605568 2.065399386 1.03E-09 0.142249718 0.122283828 11408.82218 15.18621372 1159.458914 680.9664538 1.00E-14 13.99999527 -2.065399385 VLHGEQYLELYKPLPR ddPTM_HeLa_A486_30min_R1 1 VLHGEQYLELYKPLPR 16 1 A0A2R8YD50;P51659-3;P51659;E7EPL9;E7ER27;A0A2R8Y7L2;E7ET17;P51659-2 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 0 55.186 0.035151 6753300 10868 11614 11039 5959.9 13408 12113 13156 12573 10294 12929 FALSE FALSE TRUE 10106.20932 10693.66434 15313.59643 13874.9484 11726.24362 10618.62122 9864.22965 9710.402367 11186.29221 9691.494246 1.042791655 1.103407181 1.580106849 1.43166245 1.209952079 1.095663986 1.017823403 1.001951002 1.154238131 1 13.2425034 -6.205293102 2.981533969 1.047255209 1.297903272 0.362107435 0.148251912 0.319158721 5.633710088 0.058811769 0.056795033 6.23E-07 6.205293102 0.250648063 VLHNDSDILFPVSGVGSYS(ph)PADAPLGSLENGTGPEDHVLPDPGLR ddPTM_HeLa_A485_30min_R1 1 VLHNDSDILFPVSGVGSYSPADAPLGSLENGTGPEDHVLPDPGLR 45 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 1 0 VLHNDSDILFPVS(0.001)GVGS(0.097)Y(0.408)S(0.444)PADAPLGS(0.025)LENGT(0.025)GPEDHVLPDPGLR 81.573 0.00016109 26245000 4851.1 5294.9 5216.8 5015.8 6781.7 5007.3 8358.3 6821.4 4217.7 6224.2 TRUE FALSE FALSE 5930.210459 5914.092495 7146.711409 5289.800453 6106.490136 5269.474485 6572.480924 5148.440954 5064.153703 4672.621488 1.269139919 1.265690472 1.529486484 1.132084092 1.306865996 1.127734078 1.406593909 1.101831374 1.083792838 1 12.19001646 -7.416701245 5.696545454 1.057456697 1.287099311 0.466734088 0.113071405 0.207393366 9.208350215 0.062870023 0.029194992 3.83E-08 7.416701245 0.229642613 VLHNDSDILFPVSGVGSYSPADAPLGS(ph)LENGTGPEDHVLPDPGLR ddPTM_HeLa_A486_30min_R1 1 VLHNDSDILFPVSGVGSYSPADAPLGSLENGTGPEDHVLPDPGLR 45 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 1 0 VLHNDSDILFPVSGVGS(0.071)Y(0.067)S(0.071)PADAPLGS(0.396)LENGT(0.396)GPEDHVLPDPGLR 61.001 0.0033827 72704000 6528.9 7703.6 5754 0 8451.1 6839.3 6576.1 5724.7 4837.3 5657.3 TRUE FALSE FALSE 6071.257825 7093.13868 7982.102897 0 7391.084235 5995.536703 4930.690225 4421.310779 5256.601059 4240.675257 1.431672424 1.672643683 1.88227167 0 1.742902671 1.413816513 1.162713466 1.042595934 1.239566989 1 12.05007829 VLHNQLVLFHNAIAAYFAGNQK ddPTM_HeLa_A485_30min_R1 2 VLHNQLVLFHNAIAAYFAGNQK 22 0 P53367;P53367-2;P53367-3 P53367 ARFIP1 Arfaptin-1 0 0 ; ; 208.32 1.74E-29 157576000 98277 110248 98959 114474 140845 92882 181150 182120 69843 164549 FALSE FALSE TRUE 120138.3796 123140.5446 135568.0521 120727.4248 126821.9773 97745.1579 142445.8226 137454.7844 83859.84946 123529.9626 0.972544451 0.996847582 1.097450766 0.97731289 1.026649524 0.791266797 1.153127708 1.112724246 0.678862421 1 16.91450149 VLHNQLVLFHNAIAAYFAGNQK ddPTM_HeLa_A486_30min_R1 2 VLHNQLVLFHNAIAAYFAGNQK 22 0 P53367;P53367-2;P53367-3 P53367 ARFIP1 Arfaptin-1 0 0 ; ; 202.5 4.63E-29 110558000 34505 44979 37947 23529 52316 44738 71331 60914 46349 65661 FALSE FALSE TRUE 32086.37768 41414.70023 52641.09466 54776.70109 45754.03945 39218.68042 53483.22934 47045.21194 50366.56864 49219.05822 0.651909623 0.841436259 1.069526654 1.112916481 0.92960006 0.796818993 1.086636585 0.955833241 1.023314351 1 15.58692943 -4.462298424 3.242135072 0.992539334 0.657916255 0.606034236 0.086933356 0.189019827 3.588869518 0.023755521 0.120537663 3.45E-05 4.462298424 -0.334623079 VLHS(ph)PPAVR ddPTM_HeLa_A485_30min_R1 6 VLHSPPAVR 9 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR ;;;;; 111.86 0.0006229 3381390000 486536 641663 656572 473702 768281 614036 670529 793273 593633 650074 TRUE FALSE FALSE 594764.2547 716699.9061 899465.305 499579.1408 691788.246 646185.9755 527265.0014 598721.5529 712769.698 488022.5155 1.21872298 1.468579591 1.843081572 1.023680517 1.417533462 1.324090498 1.08041122 1.226831824 1.460526257 1 18.89658818 -5.278875941 24.99721169 1.235337029 1.505973267 0.298577906 0.203369708 1054.263568 1511399.039 0.056971123 0.084717763 5.26E-06 5.278875941 0.270636238 VLHS(ph)PPAVR ddPTM_HeLa_A486_30min_R1 6 VLHSPPAVR 9 0 Q9Y4B5;Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5-4 Q9Y4B5;Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 1 0 VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR;VLHS(1)PPAVR ;;;;; 122.69 0.0002437 2497250000 670511 786824 677386 235465 906111 672292 766790 763740 626435 677968 TRUE FALSE FALSE 623511.6414 724473.2007 939688.0002 548174.4197 792458.1092 589351.4484 574931.0317 589853.0743 680734.8902 508200.4 1.226901123 1.425565979 1.8490501 1.078657986 1.559341766 1.159683165 1.131307712 1.160670228 1.339500894 1 18.95503799 -6.279464209 23.66077376 1.166591441 1.431768044 0.303591041 0.20397871 544.4948852 714742.6631 0.070699355 0.062503696 5.25E-07 6.279464209 0.265176603 VLHSSNPVPLYAPNLS(ph)PPADSR ddPTM_HeLa_A485_30min_R1 2 VLHSSNPVPLYAPNLSPPADSR 22 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 VLHSSNPVPLYAPNLS(0.988)PPADS(0.012)R;VLHSSNPVPLYAPNLS(0.996)PPADS(0.003)R ; 122.01 9.43E-06 359950000 71446 196161 242030 39861 213995 130008 132640 145883 153812 63174 TRUE FALSE FALSE 87338.91621 219100.3226 331566.9687 42038.5055 192688.9064 136815.0178 104300.3804 110104.9655 184680.6576 47425.88443 1.841587506 4.619846845 6.991265902 0.88640425 4.062948087 2.884817426 2.199229001 2.321621765 3.8940899 1 15.53338706 -5.27671414 24.99687807 2.592331274 4.497795125 0.269593589 1.513409865 1094.202012 1790639.972 0.421275371 0.627518105 5.29E-06 5.27671414 1.90546385 VLHSSNPVPLYAPNLS(ph)PPADSR ddPTM_HeLa_A486_30min_R1 2 VLHSSNPVPLYAPNLSPPADSR 22 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 VLHSSNPVPLYAPNLS(0.824)PPADS(0.176)R;VLHSSNPVPLYAPNLS(0.997)PPADS(0.003)R ; 98.073 0.00060636 208980000 75026 113880 136869 7981.99 138795 57367 73699 84997 99698 35925 TRUE FALSE FALSE 69767.06483 104855.7341 189868.3423 18582.47611 121386.0369 50289.6428 55258.73069 65645.03857 108339.9029 26929.14617 2.590764089 3.893763783 7.050663289 0.690050698 4.507608081 1.867480034 2.052004558 2.437694763 4.023146603 1 14.71688087 -5.276622641 24.96058659 2.483281036 4.449934107 0.293431378 1.515975236 1029.383454 1692256.811 0.417369184 0.621706146 5.29E-06 5.276622641 1.966653071 VLIAAHGNSLR ddPTM_HeLa_A485_30min_R1 2 VLIAAHGNSLR 11 0 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 0 ; ; 158.05 5.52E-06 226930000 175860 234660 245880 145096 284650 247410 283090 310800 226170 228410 FALSE FALSE TRUE 214979.4503 262101.4457 336841.2439 153022.2271 256309.2465 260364.005 222605.5089 234575.8127 271560.2444 171471.5906 1.253732176 1.52854152 1.964414296 0.892405713 1.494762168 1.518408992 1.298206357 1.368015611 1.583704003 1 17.38761004 -10.9291725 2.516372142 0.711891632 1.4344508 0.201095086 0.259253857 18482731.06 11117260.59 31380243.48 0.062803908 1.18E-11 10.9291725 0.722559168 VLIAAHGNSLR ddPTM_HeLa_A486_30min_R1 2 VLIAAHGNSLR 11 0 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 0 ; ; 169.58 1.72E-06 196610000 200470 232650 239520 24717 306010 213000 226760 230700 228820 190903 FALSE FALSE TRUE 186418.0882 214213.9667 332268.5586 57542.42513 267627.3724 186722.2256 170022.2496 178174.6461 248654.3018 143099.6462 1.302715228 1.496956648 2.321938365 0.402114377 1.870216869 1.304840582 1.188138853 1.245108921 1.737630444 1 17.12666058 -5.236356935 24.99795492 1.285518722 1.686178481 0.17619941 0.447965457 1523.433154 1518299.611 0.117043091 0.202623964 5.80E-06 5.236356935 0.40065976 VLIALLAR ddPTM_HeLa_A485_30min_R1 2 VLIALLAR 8 0 Q8NBJ5 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 0 0 ; ; 185.88 1.79E-06 56736000 45255 59732 64634 41694 68861 51094 64230 69120 41417 57624 FALSE FALSE TRUE 55321.81862 66717.1378 88544.80625 43971.63765 62004.95705 53769.20283 50506.73579 52168.21162 49729.012 43259.39729 1.278839329 1.542257682 2.046834024 1.016464408 1.433329194 1.242948497 1.167532119 1.2059394 1.149553972 1 15.40072594 -5.285736507 24.99902226 1.195710498 1.61460522 0.489932118 0.209033431 665.4556646 684677.8359 0.058800661 0.087261839 5.18E-06 5.285736507 0.418894722 VLIALLAR ddPTM_HeLa_A486_30min_R1 2 VLIALLAR 8 0 Q8NBJ5 Q8NBJ5 COLGALT1 Procollagen galactosyltransferase 1 0 0 ; ; 196.81 1.35E-09 57618000 58126 63999 62254 22437 75036 54281 67957 67245 51428 69628 FALSE FALSE TRUE 54051.66756 58927.48616 86360.41602 52234.4699 65624.2852 47584.36211 50953.43982 51934.78145 55885.82045 52192.6956 1.035617474 1.129037033 1.654645636 1.000800386 1.257346156 0.911705394 0.976256145 0.995058424 1.07075942 1 15.67156029 -6.254846917 24.90786438 0.989540793 1.223156848 0.300082555 0.171404372 651.596693 2461887.71 0.057867417 0.056590453 5.56E-07 6.254846917 0.233616054 VLISFK ddPTM_HeLa_A485_30min_R1 1 VLISFK 6 0 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 0 0 116.35 0.024345 63420000 24941 30331 29242 28872 40005 38210 45904 50645 31612 45996 FALSE FALSE TRUE 30489.0394 33877.94661 40059.83266 30449.20425 36021.96173 40210.61652 36096.2354 38224.23434 37956.23844 34530.04369 0.882971353 0.981115081 1.160144279 0.881817716 1.043206376 1.164511023 1.045357362 1.106984824 1.099223586 1 15.07556454 -5.996417929 24.93367334 1.089349449 0.986526791 0.267408512 0.082362876 146.4822212 1019599.015 0.025329305 0.028585401 1.01E-06 5.996417929 -0.102822658 VLISFK ddPTM_HeLa_A486_30min_R1 1 VLISFK 6 0 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 0 0 116.35 0.024345 57830000 99879 115840 90849 40389 131690 123470 140860 137630 109010 144070 FALSE FALSE TRUE 92877.99788 106660.4165 126028.1658 94027.63315 115172.2122 108237.5268 105615.3381 106294.6534 118459.0746 107993.9343 0.860029765 0.98765192 1.166993005 0.870675134 1.06646927 1.002255613 0.977974725 0.984265035 1.09690489 1 16.72059076 -4.296612023 4.506657618 1.017609095 0.853803751 0.288985342 0.074892071 0.216515182 10.02295592 0.017848583 0.101374921 5.05E-05 4.296612023 -0.163805344 VLISVGS(ph)YK ddPTM_HeLa_A485_30min_R1 2 VLISVGSYK 9 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 VLISVGS(1)YK;VLISVGS(1)YK ; 153.11 5.42E-05 670780000 1715750 1624760 1206360 2165800 1879840 1639030 2264700 2274400 1216030 2474000 TRUE FALSE FALSE 2097412.668 1814761.548 1652642.765 2284112.17 1692676.529 1724847.076 1780828.344 1716599.834 1460076.067 1857277.331 1.129294281 0.977108544 0.889820135 1.229817503 0.911375216 0.928696565 0.958838142 0.924256063 0.786137882 1 20.82475783 VLISVGS(ph)YK ddPTM_HeLa_A486_30min_R1 2 VLISVGSYK 9 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 VLISVGS(1)YK;VLISVGS(1)YK ; 177.57 7.02E-07 1048980000 2136590 2299970 1256310 1133760 2069500 2170520 2949800 2465400 1584620 2751000 TRUE FALSE FALSE 1986826.074 2117712.001 1742786.877 2639450.577 1809924.013 1902743.311 2211728.84 1904082.239 1721976.137 2062131.694 0.963481663 1.026952841 0.845138495 1.279962179 0.877695648 0.922706981 1.072544904 0.923356275 0.835046638 1 20.97570504 VLITTDLLAR ddPTM_HeLa_A485_30min_R1 2 VLITTDLLAR 10 0 P60842;Q14240-2;Q14240;E7EQG2 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 ; ; 265.82 4.88E-36 103975000 100613 131284 152315 109153 170780 128066 152644 157595 131384 161831 FALSE FALSE TRUE 122994.0147 146636.5218 208662.6569 115115.752 153776.5436 134771.3377 120030.3624 118944.5792 157751.5637 121489.51 1.012383824 1.206989162 1.71753641 0.947536557 1.265759847 1.109324894 0.987989518 0.979052259 1.298478887 1 16.89047222 VLITTDLLAR ddPTM_HeLa_A486_30min_R1 2 VLITTDLLAR 10 0 P60842;Q14240-2;Q14240;E7EQG2 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 ; ; 215.88 1.49E-19 133587000 131983 162125 147683 53182 190805 138147 168856 164888 145346 158668 FALSE FALSE TRUE 122731.6733 149277.6246 204869.8127 123810.3837 166872.4577 121103.8277 126606.4428 127346.6019 157944.7083 118936.5 1.031909239 1.255103559 1.722514221 1.040978872 1.40303824 1.018222561 1.064487712 1.070710857 1.327975081 1 16.859832 -6.26557591 24.98627813 1.098711699 1.298846059 0.190232989 0.200188518 622.5638528 3760520.014 0.069300933 0.063346281 5.43E-07 6.26557591 0.20013436 VLLATLSIPITPER ddPTM_HeLa_A485_30min_R1 1 VLLATLSIPITPER 14 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 112.94 0.0019529 7620500 4215.7 5590.4 5188.9 4769.9 7411.8 4026.6 6262 6907 5568.4 6704.9 FALSE FALSE TRUE 5153.467921 6244.14865 7108.490038 5030.467559 6673.855168 4237.42655 4924.072544 5213.04742 6685.926804 5033.491825 1.02383556 1.240520273 1.41223832 0.999399171 1.32588974 0.841846316 0.978261755 1.035672174 1.328288003 1 12.29734386 -6.245787062 24.99265336 1.03538365 1.203211488 0.203478602 0.161744859 1363.004931 2176362.995 0.05367251 0.053501512 5.68E-07 6.245787062 0.167827838 VLLATLSIPITPER ddPTM_HeLa_A486_30min_R1 1 VLLATLSIPITPER 14 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 165.63 4.99E-07 9329400 6267.4 7814.1 7764.2 2512.3 7950.6 5806.9 7519.9 8373.2 6905.4 7005.7 FALSE FALSE TRUE 5828.087625 7194.882258 10770.70617 5848.761365 6953.361612 5090.503718 5638.341483 6466.805146 7503.965632 5251.427121 1.109810246 1.370081331 2.051005551 1.113747031 1.3240899 0.969356253 1.073677946 1.231437664 1.428938355 1 12.35849383 VLLESEQFLTELTR ddPTM_HeLa_A485_30min_R1 1 VLLESEQFLTELTR 14 0 H0YLA2;P37108 H0YLA2 SRP14 Signal recognition particle 14 kDa protein 0 0 131.69 0.00015206 3885700 2667.1 3296.4 4014.6 3104.7 4396.9 3552.4 4430.6 3968.2 2804.9 4596.4 FALSE FALSE TRUE 3260.387194 3681.885305 5499.767601 3274.301899 3959.129198 3738.398171 3483.966115 2994.992728 3367.817702 3450.60207 0.944874873 1.067026922 1.593857388 0.948907417 1.147373449 1.083404604 1.00966905 0.867962363 0.976008718 1 11.75263239 -6.652370645 1.479455617 0.939093019 1.157448465 0.190995859 0.172718047 0.654261426 2.922185093 0.09749626 0.063872394 2.23E-07 6.652370645 0.218355446 VLLGFSSDES(ph)DVEASPR ddPTM_HeLa_A485_30min_R1 2 VLLGFSSDESDVEASPR 17 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 1 0 VLLGFS(0.004)S(0.025)DES(0.968)DVEAS(0.003)PR;VLLGFSS(0.001)DES(0.998)DVEASPR ; 143.28 4.21E-08 27911000 32873 32773 35279 25324 42082 38712 36616 64053 35769 57336 TRUE FALSE FALSE 40185.48544 36605.51726 48330.17018 26707.386 37892.16832 40738.90046 28792.69247 48343.90132 42947.51021 43043.19039 0.933608431 0.850436897 1.122829645 0.620478774 0.88032899 0.946465633 0.668925612 1.123148653 0.997777112 1 15.39349739 -7.288763272 24.96227647 1.045347165 0.864990806 0.265991863 0.136702068 1022.124084 933775.6589 0.072588606 0.034883957 5.14E-08 7.288763272 -0.18035636 VLLGFSSDES(ph)DVEASPR ddPTM_HeLa_A486_30min_R1 1 VLLGFSSDESDVEASPR 17 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 1 0 VLLGFS(0.084)S(0.084)DES(0.831)DVEAS(0.001)PR 57.159 0.031914 32238000 14654 18224 16575 4620.5 24232 16362 16292 19041 18562 15314 TRUE FALSE FALSE 13626.83027 16779.86387 22993.28389 10756.75751 21192.59661 14343.4228 12215.56928 14705.77996 20170.96911 11479.27472 1.187081118 1.461752966 2.00302584 0.937058984 1.846161636 1.249506014 1.064141209 1.281072221 1.757164071 1 13.48674387 VLLLEANRHS(ph)PGPER ddPTM_HeLa_A485_30min_R1 3 VLLLEANRHSPGPER 15 1 Q9UDT6;Q9UDT6-2;H7C4L6 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 VLLLEANRHS(1)PGPER;VLLLEANRHS(1)PGPER;VLLLEANRHS(1)PGPER ;; 186.9 3.63E-18 994900000 489540 742140 792730 487340 819600 614580 672300 784130 575090 653650 TRUE FALSE FALSE 598436.4841 828926.8172 1085993.815 513962.1502 737997.7462 646758.4585 528657.6128 591820.888 690505.288 490707.0845 1.219539116 1.689249745 2.21312031 1.047390931 1.503947608 1.318013289 1.077338456 1.206057354 1.407163886 1 18.90450257 -5.289988128 24.99962356 1.241045465 1.705497993 0.405101949 0.2683965 714.036036 625266.8949 0.076013492 0.112768653 5.13E-06 5.289988128 0.464452528 VLLLEANRHS(ph)PGPER ddPTM_HeLa_A486_30min_R1 4 VLLLEANRHSPGPER 15 1 Q9UDT6;Q9UDT6-2;H7C4L6 Q9UDT6 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 VLLLEANRHS(1)PGPER;VLLLEANRHS(1)PGPER;VLLLEANRHS(1)PGPER;VLLLEANRHS(1)PGPER ;;; 160.3 4.48E-12 1195780000 598110 669720 598050 214198 800850 579950 671590 698280 572260 659370 TRUE FALSE FALSE 556185.5776 616648.9481 829630.9763 498663.769 700399.9254 508401.6655 503551.0786 539296.8873 621863.9576 494259.4602 1.125290707 1.247621943 1.678533327 1.008910925 1.417069337 1.028612918 1.01879907 1.091121022 1.258173101 1 18.91490905 -6.272440178 24.90412275 1.081252395 1.29818583 0.26754598 0.178773191 992.0941459 2245942.894 0.062088619 0.05526758 5.34E-07 6.272440178 0.216933435 VLLPEYGGTK ddPTM_HeLa_A485_30min_R1 2 VLLPEYGGTK 10 0 P61604;B8ZZL8;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 ; ; 179.51 7.73E-09 83625000 271270 302780 235860 279130 324590 345800 408310 420740 287830 455030 FALSE FALSE TRUE 331613.0756 338187.4872 323114.429 294378.1651 292272.6799 363905.5533 321071.2329 317552.8553 345594.8409 341599.3952 0.970765992 0.990011961 0.945887005 0.861764304 0.855600695 1.065299173 0.939905742 0.929606023 1.01169629 1 18.3819459 -6.253187881 24.99661804 0.981814592 0.926097403 0.263525764 0.053156286 1116.625175 3382643.309 0.019267506 0.018930349 5.58E-07 6.253187881 -0.055717189 VLLPEYGGTK ddPTM_HeLa_A486_30min_R1 1 VLLPEYGGTK 10 0 P61604;B8ZZL8;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 125.57 0.0044976 20762000 28311 35049 26085 12706 38696 35098 35071 37848 31046 38624 FALSE FALSE TRUE 26326.5451 32271.58959 36185.81058 29580.21013 33842.38685 30767.96561 26295.86486 29230.83662 33737.09228 28952.299 0.909307585 1.114646875 1.24984239 1.021687781 1.168901539 1.062712347 0.908247903 1.00962057 1.165264709 1 14.82139029 -6.526381705 24.99099069 1.01642717 1.100547478 0.096986735 0.102040746 231.0492081 1648329.172 0.039142947 0.030476032 2.98E-07 6.526381705 0.084120308 VLLQASQDENFGNT(ph)TPR ddPTM_HeLa_A486_30min_R1 1 VLLQASQDENFGNTTPR 17 0 P57740;G3V1T4 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 VLLQAS(0.009)QDENFGNT(0.496)T(0.496)PR 82.877 0.011667 143300000 58136 64231 51771 26822 69707 58983 63696 72281 50313 70643 TRUE FALSE FALSE 54060.96661 59141.10163 71818.11768 62442.97151 60963.69807 51706.27716 47758.58709 55824.19418 54674.17135 52953.53299 1.020913309 1.116849024 1.356247895 1.179203124 1.151267812 0.976446221 0.901896142 1.054210947 1.032493363 1 15.69243932 -6.211641928 4.890860404 0.99044418 1.175787539 0.497664319 0.086176653 0.187697431 10.19438355 0.031366085 0.030844865 6.14E-07 6.211641928 0.185343359 VLLQASQDENFGNTT(ph)PR ddPTM_HeLa_A486_30min_R1 1 VLLQASQDENFGNTTPR 17 0 P57740;G3V1T4 P57740 NUP107 Nuclear pore complex protein Nup107 1 0 VLLQASQDENFGNT(0.223)T(0.777)PR 88.283 0.0013111 0 24902 31089 26888 10387 38102 27007 30920 31146 21922 26988 TRUE FALSE FALSE 23156.49839 28625.39442 37299.75369 24181.46093 33322.89187 23675.15093 23183.48896 24054.73571 23822.21661 20230.02914 1.144659666 1.414995214 1.843781511 1.195325067 1.647199401 1.170297421 1.145993849 1.189060853 1.177567093 1 14.30421078 -6.368310269 7.629764992 1.146473798 1.45467888 0.392404622 0.194385455 0.306244275 19.4963245 0.067782387 0.059671162 4.28E-07 6.368310269 0.308205082 VLLSLEHGLWAPNLHFHSPNPEIPALLDGR ddPTM_HeLa_A486_30min_R1 1 VLLSLEHGLWAPNLHFHSPNPEIPALLDGR 30 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 68.76 0.0033278 8459000 3773.8 4804.9 5298.6 724.88 5996.1 4029.4 5252.2 5298.3 4119 4898.9 FALSE FALSE TRUE 3509.276108 4424.142225 7350.359821 1687.557273 5244.013227 3532.293596 3938.044008 4091.992751 4476.038236 3672.183554 0.955637445 1.204771537 2.001631921 0.459551449 1.428036793 0.961905511 1.072398466 1.114321409 1.218903732 1 11.84242246 -5.265470791 24.99986321 1.055917293 1.369089399 0.183488323 0.336807141 645.8961827 4005380.144 0.091575975 0.14164706 5.43E-06 5.265470791 0.313172106 VLLVELPAFLR ddPTM_HeLa_A486_30min_R1 1 VLLVELPAFLR 11 0 H0YLC0;Q03169 H0YLC0 TNFAIP2 Tumor necrosis factor alpha-induced protein 2 0 0 122.13 0.0033998 1479300 1888.7 2247.1 1948.7 1039.1 2336.4 2194.4 2007.8 2518 2345.1 2261.4 FALSE FALSE TRUE 1756.311883 2069.031612 2703.288828 2419.077313 2043.346926 1923.677239 1505.427204 1944.706368 2548.375156 1695.130721 1.036092298 1.220573485 1.594737677 1.427074198 1.205421447 1.134825306 0.888089152 1.147230915 1.503350228 1 10.72718082 -5.964252498 5.38253097 1.132168176 1.33199788 0.160660358 0.198313908 0.352029267 26.18865868 0.066890485 0.074910238 1.09E-06 5.964252498 0.199829704 VLLYLLSPR ddPTM_HeLa_A485_30min_R1 2 VLLYLLSPR 9 0 Q15397 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 0 0 ; ; 155.75 3.73E-05 20659200 20612.5 25190 25752 19903.2 32123 19041.6 26282 23444 20612.8 27948 FALSE FALSE TRUE 25197.67951 28135.75138 35278.73643 20990.46142 28924.72133 20038.58873 20666.636 17694.32224 24749.59989 20981.07794 1.200971636 1.341005998 1.681454905 1.000447235 1.378609879 0.955079085 0.98501307 0.843346671 1.179615268 1 14.35680118 -6.059923909 1.404042447 0.977080495 1.362754998 0.423514702 0.182595697 0.380674638 1.534200988 0.076311432 0.081443272 8.71E-07 6.059923909 0.385674504 VLLYLLSPR ddPTM_HeLa_A486_30min_R1 2 VLLYLLSPR 9 0 Q15397 Q15397 KIAA0020 Pumilio domain-containing protein KIAA0020 0 0 ; ; 157.33 1.47E-05 24707000 20963 24765 21449 7173.1 25135 22010 22752 23717 21711 21568 FALSE FALSE TRUE 19493.60195 22802.53121 29754.62722 16699.33931 21982.33393 19294.62998 17059.20895 18317.15684 23592.92696 16167.23242 1.205747617 1.410416491 1.840428 1.032912677 1.359684414 1.193440503 1.055171876 1.132980362 1.459305239 1 13.98078511 -5.292808359 24.99960156 1.185073437 1.478019585 0.337610146 0.198191193 773.8033894 616683.3205 0.05560668 0.082486977 5.10E-06 5.292808359 0.292946148 VLMKS(ph)PQLLR ddPTM_HeLa_A485_30min_R1 1 VLMKSPQLLR 10 1 A0A0A0MS79;O14513 A0A0A0MS79 NCKAP5 Nck-associated protein 5 1 0 VLMKS(1)PQLLR 71.548 0.0063181 144960000 279140 361050 282230 350190 455080 388260 492300 532790 321810 471240 TRUE FALSE FALSE 341233.73 403271.6568 386638.6216 369319.993 409770.6373 408588.6932 387116.0833 402122.4171 386394.3152 353768.5405 0.964567764 1.139930804 1.092914087 1.043959399 1.158301517 1.154960508 1.094263732 1.13668224 1.092223505 1 18.43244623 -4.253117664 24.67211572 1.106899652 0.964567678 0.42040495 0.047843204 797.5072755 2364378.419 0.011424822 0.123268779 5.58E-05 4.253117664 -0.142331974 VLMKS(ph)PQLLR ddPTM_HeLa_A486_30min_R1 2 VLMKSPQLLR 10 1 A0A0A0MS79;O14513 A0A0A0MS79 NCKAP5 Nck-associated protein 5 1 0 VLMKS(1)PQLLR;VLMKS(1)PQLLR ; 103.76 0.00054243 531140000 793920 751770 550000 306330 927330 763230 912880 878690 628790 918450 TRUE FALSE FALSE 738270.3078 692197.0073 762974.7295 713151.7211 811015.6244 669070.4426 684467.7685 678631.4687 683294.0235 688464.1419 1.072343878 1.005422019 1.10822726 1.035858918 1.178007067 0.971830487 0.994195234 0.985717959 0.992490359 1 19.39302199 -6.357199269 24.5561969 0.988287884 1.074984296 0.526410149 0.043084671 36.46451037 9347.119374 0.014727705 0.012988619 4.39E-07 6.357199269 0.086696413 VLMKS(ph)PSPALHPPQK ddPTM_HeLa_A485_30min_R1 1 VLMKSPSPALHPPQK 15 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VLMKS(0.5)PS(0.5)PALHPPQK 129.11 1.23E-05 1054000000 776920 784910 563890 827640 1135300 1030400 1410800 1649300 777850 1259900 TRUE FALSE FALSE 949743.1737 876698.3967 772496.3764 872851.8775 1022265.546 1084350.151 1109371.055 1244806.589 933957.3601 945830.1167 1.004137167 0.926908946 0.816739035 0.922842128 1.080813063 1.146453397 1.172907307 1.316099548 0.987447263 1 19.85122155 -5.853426884 3.118232407 1.145359241 0.908770413 0.502077991 0.096966924 0.188296518 3.667830316 0.031309481 0.036939697 1.40E-06 5.853426884 -0.236588828 VLMKS(ph)PSPALHPPQK ddPTM_HeLa_A486_30min_R1 1 VLMKSPSPALHPPQK 15 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VLMKS(0.865)PS(0.135)PALHPPQK 141.22 2.63E-07 1120900000 1385100 1282200 657160 298590 1438900 1417800 1788300 1564300 1151400 1591500 TRUE FALSE FALSE 1288011.643 1180593.802 911629.9514 695132.6099 1258419.745 1242886.251 1340848.425 1208143.038 1251204.279 1192978.041 1.079660814 0.989619056 0.764163228 0.582686844 1.054855749 1.041834978 1.123950634 1.012711883 1.048807468 1 20.18613606 -5.899611451 24.02396083 1.051322421 0.852474363 0.357368215 0.12669687 11.08510798 2634.951429 0.042652174 0.048363056 1.26E-06 5.899611451 -0.198848058 VLMKSPS(ph)PALHPPQK ddPTM_HeLa_A485_30min_R1 1 VLMKSPSPALHPPQK 15 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VLMKS(0.365)PS(0.635)PALHPPQK 138.66 2.82E-06 1003600000 1026300 973820 611580 1015900 1437600 1290100 1745400 1906600 970120 1671200 TRUE FALSE FALSE 1254596.894 1087699.778 837828.892 1071396.045 1294467.496 1357647.641 1372481.031 1439003.361 1164814.186 1254600.596 0.999997049 0.866968963 0.667805272 0.853973805 1.031776567 1.082135339 1.093958536 1.14698125 0.928434268 1 20.25879672 -5.775088099 4.440754035 1.061118338 0.833485072 0.523678813 0.093089085 0.15212212 7.148400868 0.029888501 0.036149894 1.68E-06 5.775088099 -0.227633265 VLMKSPS(ph)PALHPPQK ddPTM_HeLa_A486_30min_R1 1 VLMKSPSPALHPPQK 15 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VLMKS(0.399)PS(0.601)PALHPPQK 134.37 7.09E-06 789650000 1394800 1279700 651150 292680 1353200 1309500 1581600 1610900 1061400 1478900 TRUE FALSE FALSE 1297031.723 1178291.911 903292.7184 681373.8312 1183469.038 1147947.204 1185866.952 1244133.236 1153403.007 1108573.814 1.170000325 1.062889901 0.814824152 0.61464002 1.067559979 1.035517157 1.069723041 1.12228272 1.040438618 1 20.0802734 VLNT(ph)GSDVEEAVADALK ddPTM_HeLa_A486_30min_R1 4 VLNTGSDVEEAVADALK 17 0 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.5)GS(0.5)DVEEAVADALK;VLNT(0.5)GS(0.5)DVEEAVADALK;VLNT(0.5)GS(0.5)DVEEAVADALK;VLNT(0.5)GS(0.5)DVEEAVADALK ;;; 95.347 0.00083956 71715100 39139.9 48142.9 31961.7 22115.8 42861.4 52909 56525 53212 38411.2 61337 TRUE FALSE FALSE 36396.39513 44327.88127 44338.1262 51486.70007 37485.32355 46381.62552 42381.84714 41096.78921 41740.71374 45977.81596 0.791607743 0.964114548 0.964337372 1.119816133 0.815291522 1.008782704 0.921789047 0.893839526 0.907844639 1 15.48865032 -4.259052856 23.94720304 0.953478215 0.791607638 0.289903138 0.076721042 159.4129108 1599415.466 0.018738433 0.121487517 5.51E-05 4.259052856 -0.161870577 VLNTGS(ph)DVEEAVADALK ddPTM_HeLa_A485_30min_R1 3 VLNTGSDVEEAVADALK 17 0 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.02)GS(0.98)DVEEAVADALK;VLNT(0.025)GS(0.975)DVEEAVADALK;VLNT(0.247)GS(0.753)DVEEAVADALK ;; 225.3 2.55E-34 114698000 114515 93503 83593 197930 136126 104010 144479 123797 111678 232961 TRUE FALSE FALSE 139988.4667 104437.3625 114517.5293 208742.4147 122572.8175 109455.8028 113609.8814 93435.59164 134090.7502 174888.11 0.800445877 0.59716674 0.654804545 1.193576937 0.700864212 0.625861888 0.649614667 0.534259257 0.766723079 1 17.41607268 -5.972032963 24.99962464 0.679998273 0.805274542 0.0464315 0.187554849 566.898945 506746.2329 0.059109446 0.067022521 1.07E-06 5.972032963 0.125276269 VLNTGS(ph)DVEEAVADALK ddPTM_HeLa_A486_30min_R1 3 VLNTGSDVEEAVADALK 17 0 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.058)GS(0.942)DVEEAVADALK;VLNT(0.047)GS(0.953)DVEEAVADALK;VLNT(0.203)GS(0.797)DVEEAVADALK ;; 184.78 1.11E-17 128989000 65954 91751 49415.7 31664.7 78360 93572 105292 97441 68361 98438 TRUE FALSE FALSE 61330.96519 84480.31661 68550.78244 73717.02185 68531.35812 82028.03801 78946.82793 75255.81142 74286.58652 73788.48408 0.831172587 1.14489839 0.929017357 0.999031526 0.928754114 1.111664497 1.069907167 1.019885587 1.006750409 1 16.17110806 -6.251214006 24.97900875 1.044650985 0.976198291 0.175800842 0.079788912 1356.116599 3312783.647 0.02532243 0.0250347 5.61E-07 6.251214006 -0.068452694 VLNTGS(ph)DVEEAVADALKKPAR ddPTM_HeLa_A485_30min_R1 2 VLNTGSDVEEAVADALKKPAR 21 2 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.095)GS(0.905)DVEEAVADALKKPAR;VLNT(0.004)GS(0.996)DVEEAVADALKKPAR ; 239.47 1.10E-46 1472370000 606070 625340 436575 721090 846190 904870 1303480 1533640 631890 1001730 TRUE FALSE FALSE 740888.1806 698468.0733 598082.2599 760481.3208 761940.3524 952247.594 1024980.85 1157512.385 758704.527 752017.1465 0.985201181 0.92879275 0.79530402 1.011255294 1.013195452 1.266257822 1.362975371 1.539210097 1.00889259 1 19.52040603 -6.122519752 2.339845691 1.280739692 0.920082419 0.444454788 0.159503682 0.247306677 2.658365189 0.057721616 0.058315166 7.54E-07 6.122519752 -0.360657273 VLNTGS(ph)DVEEAVADALKKPAR ddPTM_HeLa_A486_30min_R1 2 VLNTGSDVEEAVADALKKPAR 21 2 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.001)GS(0.999)DVEEAVADALKKPAR;VLNT(0.016)GS(0.984)DVEEAVADALKKPAR ; 290.1 3.36E-87 1343380000 990290 868280 480680 490490 1042520 1001010 1378660 1323700 678640 1454620 TRUE FALSE FALSE 920875.7849 799474.3306 666812.1691 1141885.508 911757.4205 877515.5637 1033704.686 1022322.406 737465.0616 1090373.684 0.844550633 0.733211322 0.611544628 1.047242358 0.836188028 0.804784247 0.948027911 0.937589031 0.676341581 1 20.05639122 -5.251839201 24.98131079 0.886546198 0.730113119 0.30672157 0.112094333 865.6070657 2252453.025 0.029978639 0.051071565 5.60E-06 5.251839201 -0.156433078 VLNTGS(ph)DVEEAVADALKKPARR ddPTM_HeLa_A485_30min_R1 1 VLNTGSDVEEAVADALKKPARR 22 3 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.001)GS(0.999)DVEEAVADALKKPARR 138.92 3.99E-07 106600000 65665 104210 45755 50038 97440 142120 186500 366100 57869 66594 TRUE FALSE FALSE 80271.95271 116396.453 62681.67852 52771.44924 87738.53147 149561.1834 146652.7514 276313.401 69482.77749 49993.34137 1.605652883 2.328239117 1.253800542 1.055569558 1.755004348 2.991622071 2.933445683 5.527004065 1.389840639 1 15.60944833 -6.245681267 4.200936114 3.074789688 1.574155902 0.174125981 1.188382352 0.295580279 12.75152948 0.403060727 0.382828172 5.68E-07 6.245681267 -1.500633786 VLPAFRES(ph)PSGR ddPTM_HeLa_A485_30min_R1 6 VLPAFRESPSGR 12 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 VLPAFRES(1)PSGR;VLPAFRES(0.712)PS(0.288)GR;VLPAFRES(0.993)PS(0.007)GR;VLPAFRES(0.997)PS(0.003)GR;VLPAFRES(0.998)PS(0.002)GR;VLPAFRES(0.843)PS(0.157)GR ;;;;; 164.66 1.19E-10 2758320000 1011155 1499699 1511087 1040407 1693933 1407877 1612530 1878650 1325005 1502170 TRUE FALSE FALSE 1236082.941 1675075.752 2070100.963 1097241.8 1525279.083 1481591.263 1267999.792 1417908.142 1590921.35 1127706.664 1.096103251 1.485382507 1.835673255 0.972985116 1.352549498 1.313809087 1.124405692 1.257337734 1.410758134 1 20.10496042 -5.278169924 24.99641395 1.222651596 1.473686024 0.245033922 0.213791984 1195.941256 1786803.741 0.059969725 0.089219447 5.27E-06 5.278169924 0.251034428 VLPAFRES(ph)PSGR ddPTM_HeLa_A486_30min_R1 4 VLPAFRESPSGR 12 1 O43166-2;O43166;O43166-3;F5GYF8 O43166-2 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 VLPAFRES(1)PSGR;VLPAFRES(0.997)PS(0.003)GR;VLPAFRES(0.998)PS(0.002)GR;VLPAFRES(0.997)PS(0.003)GR ;;; 192.32 1.12E-13 2851540000 1365010 1410910 1228250 436001 1756370 1207150 1497350 1505240 1136670 1444500 TRUE FALSE FALSE 1269329.848 1299104.353 1703861.294 1015032.362 1536069.697 1058224.106 1122697.193 1162529.711 1235197.471 1082787.798 1.172279417 1.199777422 1.573587454 0.93742501 1.418624868 0.977314399 1.036858002 1.073645005 1.140756733 1 20.0463191 -6.277612511 24.97635695 1.049764085 1.256437364 0.310230985 0.159903951 1057.61753 1633286.761 0.054213049 0.047958341 5.28E-07 6.277612511 0.206673279 VLPITVPKS(ph)PAFALK ddPTM_HeLa_A485_30min_R1 2 VLPITVPKSPAFALK 15 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 VLPIT(0.001)VPKS(0.999)PAFALK;VLPIT(0.004)VPKS(0.996)PAFALK ; 116.98 6.14E-05 1130550000 1246470 1452950 981040 1306070 2430220 2258810 3917440 5013600 1272880 2698020 TRUE FALSE FALSE 1523742.951 1622859.864 1343967.52 1377417.297 2188258.764 2377077.799 3080446.941 3784006.739 1528335.34 2025453.267 0.752297264 0.801232934 0.663539141 0.680053852 1.080379784 1.173602885 1.520867942 1.868227127 0.754564603 1 20.94981337 -6.044961294 2.067700116 1.344536658 0.723519364 0.431141366 0.285184349 0.278568703 2.377433035 0.104365386 0.110962933 9.02E-07 6.044961294 -0.621017294 VLPITVPKS(ph)PAFALK ddPTM_HeLa_A486_30min_R1 2 VLPITVPKSPAFALK 15 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 VLPITVPKS(1)PAFALK;VLPITVPKS(1)PAFALK ; 181.34 4.60E-18 778750000 1048400 959410 966010 929680 3018300 1510640 2831000 2981600 905830 1702570 TRUE FALSE FALSE 974912.5739 883382.8575 1340074.943 2164342.023 2639716.669 1324272.596 2122653.857 2302754.768 984348.0737 1276235.39 0.763897147 0.692178625 1.05002177 1.695879961 2.06836191 1.037639769 1.66321501 1.804333891 0.771290376 1 20.28346302 -5.027524419 3.932310134 1.485191783 0.742540709 0.352047531 0.38356339 0.214609415 7.305125864 0.103540613 0.207071183 9.39E-06 5.027524419 -0.742651074 VLPPPAGYVPIRT(ph)PAR ddPTM_HeLa_A485_30min_R1 3 VLPPPAGYVPIRTPAR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR ;; 180.32 1.51E-17 2857440000 991999 1180560 1141530 1066498 1434230 1064679 1428280 1449580 1043560 1529410 TRUE FALSE FALSE 1212665.755 1318616.222 1563829.45 1124758.085 1291433.025 1120423.946 1123116.31 1094068.232 1252992.92 1148156.234 1.056185317 1.148464106 1.362035413 0.979621111 1.124788585 0.975846242 0.978191188 0.952891427 1.091308729 1 20.13088754 -5.303363589 24.99955393 1.014152444 1.184852102 0.458024243 0.08681753 429.3471393 256020.3266 0.024666615 0.036586818 4.97E-06 5.303363589 0.170699658 VLPPPAGYVPIRT(ph)PAR ddPTM_HeLa_A486_30min_R1 5 VLPPPAGYVPIRTPAR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR ;;;; 203.64 3.64E-25 5801240000 1949230 2322140 1935900 672354 2508290 1982190 2344560 2458360 1780605 2094230 TRUE FALSE FALSE 1812599.043 2138125.169 2685532.325 1565274.091 2193676.879 1737647.551 1757926.29 1898645.094 1934949.275 1569821.177 1.154653198 1.362018299 1.710724995 0.997103437 1.397405585 1.106907957 1.119825822 1.209465843 1.23259216 1 20.5821688 -5.284110721 24.99979701 1.167646164 1.40442089 0.32883861 0.167310016 949.826559 1047376.047 0.046457586 0.068958574 5.20E-06 5.284110721 0.236774726 VLPPPAGYVPIRT(ph)PARK ddPTM_HeLa_A486_30min_R1 1 VLPPPAGYVPIRTPARK 17 2 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VLPPPAGYVPIRT(1)PARK 126.91 1.67E-05 671360000 514590 544980 379130 185490 562050 483960 584280 591820 438420 548810 TRUE FALSE FALSE 478519.8983 501793.8 525939.2895 431830.0941 491552.4481 424253.9357 438086.9641 457075.5053 476422.5986 411384.4038 1.163194068 1.219768653 1.278461907 1.049699721 1.194873805 1.031283471 1.064909024 1.111066684 1.158095917 1 18.65012757 -5.265482851 24.99917015 1.092996618 1.220404255 0.502639709 0.060587072 286.210431 1769525.319 0.016611351 0.025667869 5.43E-06 5.265482851 0.127407637 VLPQLISTITASVQNPALR ddPTM_HeLa_A485_30min_R1 1 VLPQLISTITASVQNPALR 19 0 Q92616 Q92616 GCN1L1 Translational activator GCN1 0 0 150.16 1.21E-09 3649700 2708.6 2982.2 3937.8 2120.7 4306.6 2258.3 3479.6 3072.6 2878 3698.1 FALSE FALSE TRUE 3311.118725 3330.942348 5394.556086 2236.548471 3877.819783 2376.541096 2736.155034 2319.040032 3455.588201 2776.231728 1.192666553 1.199807031 1.943121689 0.805605832 1.396792545 0.856031243 0.985564356 0.835319332 1.244704527 1 11.43891228 -5.296863652 24.99982574 1.018573384 1.420659986 0.361468281 0.259749963 647.8947794 457234.709 0.071530526 0.106101657 5.05E-06 5.296863652 0.402086602 VLPSEQESTK(ac)KPYR ddPTM_HeLa_A485_30min_R1 1 VLPSEQESTKKPYR 14 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 VLPSEQESTK(0.996)K(0.004)PYR 195.87 1.88E-14 41174000 31848 39646 34662 39403 57620 49651 79640 97085 62644 107450 FALSE TRUE FALSE 38932.47773 44282.25483 47484.91621 41555.48612 51883.15048 52250.64958 62624.2634 73274.75153 75216.0762 80664.69247 0.482645833 0.548967007 0.588670393 0.515163262 0.643195293 0.647751178 0.776352844 0.90838692 0.932453517 1 16.29964971 -6.941308982 0.812432167 1.002641307 0.530794564 0.9665183 0.032510203 0.101204091 0.126197289 0.027232668 0.014389492 1.14E-07 6.941308982 -0.471846742 VLPSEQESTK(ac)KPYR ddPTM_HeLa_A486_30min_R1 1 VLPSEQESTKKPYR 14 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 VLPSEQESTK(0.908)K(0.092)PYR 183.28 8.51E-10 64254000 25126 30814 23802 11722 40936 34321 39398 41294 30698 40623 FALSE TRUE FALSE 23364.79715 28372.18642 33018.77184 27289.4084 35801.42517 30086.82397 29540.20369 31892.25764 33358.92736 30450.73639 0.767298263 0.931740568 1.0843341 0.896182215 1.175716236 0.988049142 0.970098171 1.047339455 1.095504783 1 14.8941895 -4.379484202 2.661435306 1.030422443 0.746194605 0.550752929 0.073357035 0.260925112 2.833431424 0.018371592 0.14406995 4.17E-05 4.379484202 -0.284227838 VLPSEQESTKK(ac)PYR ddPTM_HeLa_A485_30min_R1 1 VLPSEQESTKKPYR 14 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 VLPSEQESTK(0.002)K(0.998)PYR 209.39 2.84E-15 37235000 39274 64923 52969 41104 72151 75647 100860 139210 80278 109770 FALSE TRUE FALSE 48010.36581 72515.18009 72564.43732 43349.40744 64967.3931 79607.75995 79310.43705 105068.5292 96389.05825 82406.35917 0.582605108 0.879970682 0.880568418 0.526044445 0.788378394 0.966039038 0.962431029 1.275005112 1.169679855 1 16.33046805 -6.630399679 1.571909277 1.154394005 0.735626564 0.650230475 0.130291001 0.241713556 1.21863976 0.069697588 0.047111119 2.34E-07 6.630399679 -0.418767441 VLPSEQESTKK(ac)PYR ddPTM_HeLa_A486_30min_R1 1 VLPSEQESTKKPYR 14 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 VLPSEQESTK(0.001)K(0.999)PYR 175.15 1.54E-09 58325000 26351 27332 23943 12594 35834 26056 37371 38187 22704 34729 FALSE TRUE FALSE 24503.93098 25166.11278 33214.37082 29319.46847 31339.36558 22841.47564 28020.38053 29492.65372 24672.001 26032.63235 0.941277495 0.966714101 1.275874463 1.126258308 1.203849275 0.877417056 1.076356019 1.13291093 0.947733624 1 14.66803358 -6.241751437 24.99341436 1.019532462 1.106153752 0.148259607 0.11278223 1959.093192 2487029.157 0.039281542 0.039226928 5.73E-07 6.241751437 0.08662129 VLPSIS(ph)LSPGPQPPK ddPTM_HeLa_A486_30min_R1 1 VLPSISLSPGPQPPK 15 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 VLPS(0.002)IS(0.758)LS(0.24)PGPQPPK 92.935 0.0010276 150980000 55855 93773 51708 23713 55045 80152 75294 69204 63901 102450 TRUE FALSE FALSE 51939.85294 86342.08596 71730.72239 55205.06239 48140.74283 70263.66117 56454.64482 53447.75991 69439.99013 76795.85316 0.676336687 1.124306618 0.934044215 0.718854731 0.626866437 0.914940824 0.735126214 0.695971953 0.904215362 1 16.22874079 -5.245203695 23.15982346 0.781701339 0.93283698 0.093970997 0.148429631 539.7176111 769889.2305 0.038574936 0.066478774 5.69E-06 5.245203695 0.151135642 VLPSISLS(ph)PGPQPPK ddPTM_HeLa_A486_30min_R1 1 VLPSISLSPGPQPPK 15 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 VLPSIS(0.045)LS(0.955)PGPQPPK 122.12 4.40E-05 139440000 94532 117590 73824 27838 74388 108690 104630 101390 92171 132550 TRUE FALSE FALSE 87905.79496 108271.7401 102410.6299 64808.27085 65057.5634 95280.93288 78450.46734 78305.71033 100160.4565 99358.61724 0.884732471 1.089706592 1.030717141 0.652266232 0.65477525 0.958959932 0.789568832 0.788111917 1.008070153 1 16.60035748 -2.257217932 11.61914829 0.87596754 0.996353198 0 0.149526983 0 0 0.036375228 0 0.005530725 2.257217932 0.120385658 VLPTHDASK ddPTM_HeLa_A485_30min_R1 1 VLPTHDASK 9 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 83.948 0.017511 8815300 14710 16642 21255 21952 25811 20962 25542 22774 17934 31320 FALSE FALSE TRUE 17982.18875 18588.13713 29118.10899 23151.18217 23241.16621 22059.53791 20084.74304 17188.64079 21533.1893 23512.5004 0.764792704 0.790564033 1.238409718 0.984632931 0.988460003 0.93820468 0.854215532 0.731042658 0.915818774 1 14.52114035 -6.698770964 4.307489326 0.852417275 0.961723356 0.057549281 0.136558507 0.508471107 18.7402584 0.058064457 0.043038774 2.00E-07 6.698770964 0.109306081 VLQATVVAVGSGSK ddPTM_HeLa_A485_30min_R1 2 VLQATVVAVGSGSK 14 0 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 ; ; 332.02 5.47E-97 144331000 289660 273050 219210 293700 327800 391250 439210 503140 241760 464680 FALSE FALSE TRUE 354093.8677 304980.8223 300304.9011 309744.0873 295163.081 411735.245 345369.1955 379744.1261 290279.0144 348843.8278 1.015049829 0.87426177 0.860857717 0.887916204 0.846118112 1.180285309 0.990039576 1.088579175 0.832117387 1 18.41222178 -6.215998051 24.99901514 1.021980511 0.893091464 0.300101737 0.092492111 521.7358333 287026.6877 0.029577305 0.029577216 6.08E-07 6.215998051 -0.128889048 VLQATVVAVGSGSK ddPTM_HeLa_A486_30min_R1 2 VLQATVVAVGSGSK 14 0 P61604;B8ZZL8;S4R3N1 P61604;S4R3N1 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 ; ; 298.82 2.88E-65 162606000 293030 380210 297400 135531 427900 375930 445590 431450 406930 443860 FALSE FALSE TRUE 272490.1102 350080.7749 412561.2446 315523.0174 374228.792 329551.5788 334098.669 333218.2535 442203.02 332714.567 0.818990622 1.052195514 1.239985518 0.948329435 1.124774294 0.990493388 1.004160028 1.00151387 1.329076223 1 18.34392551 VLQLMLR ddPTM_HeLa_A486_30min_R1 2 VLQLMLR 7 0 B1AHB1;P33992 B1AHB1 MCM5 DNA helicase;DNA replication licensing factor MCM5 0 0 ; ; 132.72 0.0058617 40036000 45211 52581 45973 21250.2 64942 50489 59624 58993 48421 56474 FALSE FALSE TRUE 42041.94237 48414.29006 63774.9768 49471.53953 56796.3688 44260.18051 44705.44456 45561.58171 52618.17127 42332.54282 0.993135294 1.143666004 1.506523647 1.168640867 1.341671561 1.045535599 1.056053844 1.076277934 1.242972138 1 15.36947953 -6.276820076 24.83579469 1.087178141 1.237763484 0.218338292 0.138274215 1230.50216 1986932.63 0.049889685 0.044154888 5.29E-07 6.276820076 0.150585343 VLQQAFNYLNQGVVHSITWK ddPTM_HeLa_A485_30min_R1 1 VLQQAFNYLNQGVVHSITWK 20 0 O15397;O15397-2;F5H244 O15397 IPO8 Importin-8 0 0 160.97 4.09E-15 3843500 2718.5 3736.3 2543.4 3139.1 3380.2 2027.6 4004.5 4182.8 1756 3492.3 FALSE FALSE TRUE 3323.220946 4173.227784 3484.3095 3310.581084 3043.655419 2133.762001 3148.905861 3156.961742 2108.413093 2621.733881 1.267566083 1.591781612 1.329009601 1.262744899 1.160932252 0.813874366 1.201077609 1.204150339 0.804205609 1 11.35630554 -5.62381128 1.74470477 1.028371503 1.420452412 0.563951892 0.149509904 0.268933647 1.675592942 0.051092688 0.076193676 2.38E-06 5.62381128 0.392080909 VLQQTLNYINQGVSHALTWK ddPTM_HeLa_A485_30min_R1 2 VLQQTLNYINQGVSHALTWK 20 0 O95373 O95373 IPO7 Importin-7 0 0 ; ; 215.37 1.26E-29 6851600 11663 10193.7 11573.8 11801.4 16118.3 10643 15835.9 17623.7 9360.5 17307.3 FALSE FALSE TRUE 14257.39411 11385.76454 15855.43025 12446.0806 14513.50546 11200.25102 12452.4306 13301.45994 11239.06649 12992.90863 1.097321202 0.876306058 1.22031415 0.957913348 1.117032827 0.862027999 0.958402076 1.023747671 0.865015434 1 13.66543681 -6.257001296 24.98773393 0.944358081 1.047844237 0.242576401 0.098571439 596.8605846 3360507.653 0.031333543 0.030326121 5.53E-07 6.257001296 0.103486156 VLQQTLNYINQGVSHALTWK ddPTM_HeLa_A486_30min_R1 2 VLQQTLNYINQGVSHALTWK 20 0 O95373 O95373 IPO7 Importin-7 0 0 ; ; 223.23 5.99E-30 5165700 10147.7 10692.2 8315.3 2630.67 9760.1 8184.7 11092 9948.4 7783.7 10955.2 FALSE FALSE TRUE 9436.398633 9844.911132 11535.20685 6124.332707 8535.897249 7174.95493 8316.664281 7683.366492 8458.397383 8211.946614 1.149106184 1.198852306 1.40468605 0.745783308 1.039448702 0.873721575 1.012751869 0.935632786 1.030011248 1 13.00350853 -5.256236959 24.99972803 0.948900142 1.245678588 0.64607606 0.102641583 262.0978911 1259482.273 0.026886319 0.04484728 5.54E-06 5.256236959 0.296778446 VLRPPGGGSNFSLGFDEPTEQPVRK ddPTM_HeLa_A485_30min_R1 1 VLRPPGGGSNFSLGFDEPTEQPVRK 25 2 Q9UK76;J3KT51;Q9UK76-2 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 0 0 80.412 0.0013129 12739000 9509.8 10318 10760 12058 16352 10015 14353 13823 11026 17964 FALSE FALSE TRUE 11625.2222 11524.60035 14740.57176 12716.69801 14723.93746 10539.36991 11286.3643 10432.88758 13238.81706 13485.9054 0.862027565 0.854566305 1.093035382 0.942962124 1.091801924 0.781509999 0.836900746 0.773614175 0.981678031 1 13.71916476 -6.27743103 24.92024641 0.858226493 0.967985772 0.165884861 0.102237284 1275.598017 1987795.569 0.035961395 0.031810304 5.28E-07 6.27743103 0.109759279 VLRPPGGGSNFSLGFDEPTEQPVRK ddPTM_HeLa_A486_30min_R1 1 VLRPPGGGSNFSLGFDEPTEQPVRK 25 2 Q9UK76;J3KT51;Q9UK76-2 Q9UK76 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 0 0 83.606 0.00024242 5705900 9031.2 11373 9459.1 4269.8 11532 10753 13179 11931 9876.3 12434 FALSE FALSE TRUE 8398.159517 10471.76206 13121.91684 9940.310184 10085.54903 9426.404188 9881.474807 9214.571752 10732.38564 9320.445468 0.90104701 1.123525919 1.4078637 1.066505911 1.082088733 1.011368418 1.060193404 0.988640702 1.151488485 1 13.18618319 -5.493572054 24.96902834 1.049551584 1.157933765 0.10643978 0.121994333 1418.04178 1208158.599 0.035131749 0.052007128 3.21E-06 5.493572054 0.108382181 VLS(ph)AMIR ddPTM_HeLa_A485_30min_R1 2 VLSAMIR 7 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 VLS(1)AMIR;VLS(1)AMIR ; 82.426 0.010682 28793000 133384 141870 125517 111675 202034 108139 126409 129696 99127 121669 TRUE FALSE FALSE 163054.8106 158460.4624 171950.9615 117775.5225 181918.7856 113800.9908 99400.68448 97887.85264 119020.8797 91339.15745 1.785157814 1.734857938 1.882554715 1.289430796 1.991684516 1.245916801 1.088259266 1.07169647 1.303065224 1 16.47894586 -6.410343608 5.544209917 1.127530358 1.718058393 0.722263255 0.185454155 0.12401714 5.252760224 0.063795416 0.055788186 3.89E-07 6.410343608 0.590528035 VLS(ph)AMIR ddPTM_HeLa_A486_30min_R1 3 VLSAMIR 7 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 VLS(1)AMIR;VLS(1)AMIR;VLS(1)AMIR ;; 89.698 0.0068896 60994000 208813 202574 163851 70748 231557 202257 233216 220345 151964 200368 TRUE FALSE FALSE 194176.287 186521.2985 227298.4953 164704.9194 202512.9619 177304.5877 174862.8901 170177.2536 165136.3619 150194.5486 1.292831789 1.241864636 1.513360487 1.096610502 1.348337631 1.180499488 1.164242589 1.133045474 1.09948306 1 17.19647292 -7.064048095 0.474974929 1.002005344 1.331763926 0.516771179 0.097570999 0.764743496 0.398727319 0.097105197 0.077384361 8.63E-08 7.064048095 0.329758582 VLS(ph)DS(ph)EDEEKDADVPGTSTR ddPTM_HeLa_A485_30min_R1 2 VLSDSEDEEKDADVPGTSTR 20 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 2 0 VLS(1)DS(1)EDEEKDADVPGTSTR;VLS(1)DS(1)EDEEKDADVPGTSTR ; 142.23 2.81E-09 1272620000 1009840 728440 527290 2193400 1150170 977110 1644080 1556740 786580 2985900 TRUE FALSE FALSE 1234475.424 813624.7214 722356.5134 2313219.888 1035655.036 1028269.969 1292808.877 1174947.074 944439.3911 2241570.081 0.550719085 0.362970905 0.322254709 1.031964116 0.462022154 0.458727558 0.576742564 0.524162543 0.421329406 1 21.09607817 -10.43336832 3.161218673 1.007620617 0.525633049 0.370757216 0.186235999 202085815.2 257841301.7 13863336.58 0.048486541 3.69E-11 10.43336832 -0.481987568 VLS(ph)DS(ph)EDEEKDADVPGTSTR ddPTM_HeLa_A486_30min_R1 2 VLSDSEDEEKDADVPGTSTR 20 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 2 0 VLS(1)DS(1)EDEEKDADVPGTSTR;VLS(1)DS(1)EDEEKDADVPGTSTR ; 203.33 2.70E-26 1143670000 994620 1073260 521210 977870 923300 1438240 1870320 1548550 980900 2592300 TRUE FALSE FALSE 924902.2742 988210.9689 723036.4705 2276530.779 807491.1046 1260804.572 1402346.154 1195978.97 1065925.202 1943171.207 0.475975699 0.50855579 0.372090976 1.171554401 0.415553247 0.648838644 0.721679155 0.615477918 0.548549298 1 20.88998159 -14 0.21764437 2.867625348 0.566338525 0.231205467 0.213622252 238.5574633 2.385979717 196.059391 0.420142633 1.00E-14 14 -2.301286823 VLS(ph)EDEEDVDFDIIHNANDTFTVK ddPTM_HeLa_A485_30min_R1 1 VLSEDEEDVDFDIIHNANDTFTVK 24 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 VLS(1)EDEEDVDFDIIHNANDTFTVK 157.66 3.88E-10 29788000 28603 25467 20368 33118 37992 28891 44565 45292 24882 46608 TRUE FALSE FALSE 34965.63867 28445.14412 27902.97078 34927.15248 34209.38308 30403.68809 35043.32369 34184.06598 29875.58917 34989.48336 0.999318518 0.812962679 0.797467356 0.998218583 0.977704722 0.868937897 1.001538758 0.976981158 0.853844821 1 15.09463374 -5.269840253 24.9939598 0.952368347 0.864220832 0.22700234 0.070738116 861.2633825 2562398.576 0.019714179 0.029779733 5.37E-06 5.269840253 -0.088147515 VLS(ph)EDEEDVDFDIIHNANDTFTVK ddPTM_HeLa_A486_30min_R1 2 VLSEDEEDVDFDIIHNANDTFTVK 24 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 VLS(1)EDEEDVDFDIIHNANDTFTVK;VLS(1)EDEEDVDFDIIHNANDTFTVK ; 188.97 7.95E-21 70809000 29580 31100 19706.9 18943.4 36621 35817 47902 47994 27187 36699 TRUE FALSE FALSE 27506.59475 28635.52274 27337.93945 44101.19255 32027.6527 31398.2627 35916.41294 37066.8139 29543.59105 27509.33153 0.999900515 1.040938516 0.993769675 1.60313574 1.164246854 1.141367709 1.30560835 1.347426922 1.073947981 1 14.74763346 VLS(ph)GEFQIVNPHLLK ddPTM_HeLa_A486_30min_R1 2 VLSGEFQIVNPHLLK 15 0 P23921;E9PL69 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit 1 0 VLS(1)GEFQIVNPHLLK;VLS(1)GEFQIVNPHLLK ; 179.87 7.57E-18 97351000 128807 143440 85845 76766 155344 163785 185975 184068 125188 175470 TRUE FALSE FALSE 119778.2945 132073.292 119086.483 178715.1275 135859.307 143578.8719 139442.088 142159.7346 136039.3966 131531.1699 0.910645701 1.004121625 0.905386025 1.358728336 1.03290579 1.091595795 1.060144816 1.080806433 1.034274969 1 17.0050452 VLS(ph)PLIIK ddPTM_HeLa_A485_30min_R1 4 VLSPLIIK 8 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK ;;; 153.97 0.00016123 2051595000 1267065 1279876 1020063 1462536 1673521 1439957 1927331 2047456 1210032 1906477 TRUE FALSE FALSE 1548919.238 1429546.365 1397426.752 1542430.638 1506899.373 1515350.922 1515540.987 1545314.206 1452874.323 1431227.37 1.082231426 0.99882548 0.976383474 1.077697835 1.052872105 1.05877721 1.058910009 1.079712587 1.015124748 1 20.44882145 -5.27835335 24.99402144 1.053314807 1.017114655 0.12712959 0.034478084 1319.793742 1950274.353 0.009448743 0.014072363 5.27E-06 5.27835335 -0.036200151 VLS(ph)PLIIK ddPTM_HeLa_A486_30min_R1 4 VLSPLIIK 8 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK;VLS(1)PLIIK ;;; 157.66 8.81E-05 2221954000 1654842 1714570 1028487 658638 1601713 1590330 1903050 1878460 1295879 1755040 TRUE FALSE FALSE 1538846.121 1578701.229 1426744.71 1533342.55 1400811.22 1394131.254 1426886.762 1450775.664 1408206.835 1315566.561 1.169721219 1.200016233 1.084509711 1.165537796 1.064796919 1.059719284 1.084617688 1.102776331 1.070418539 1 20.32725281 -1 0.149421249 1.001386284 1.680574936 0.65698019 0.033837942 43.68228647 0.429191031 0.122654113 6.426326657 0.1 1 0.679188652 VLS(ph)PLR ddPTM_HeLa_A485_30min_R1 10 VLSPLR 6 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR ;;;;;;;;; 122.18 0.0059019 17480060000 4754170 4726260 5054070 5439910 6599150 4385727 5328430 4147697 5043900 6687640 TRUE FALSE FALSE 5811718.715 5278954.994 6923780.81 5737078.509 5942115.455 4615356.884 4189967.401 3130467.807 6056164.465 5020534.425 1.157589655 1.051472721 1.379092388 1.142722671 1.183562337 0.919295934 0.834566014 0.623532784 1.206278844 1 22.25940951 -6.289100821 4.377022235 0.884200175 1.185885701 0.412619637 0.156806336 0.193068248 9.032210404 0.05473472 0.049790605 5.14E-07 6.289100821 0.301685526 VLS(ph)PLR ddPTM_HeLa_A486_30min_R1 7 VLSPLR 6 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR;VLS(1)PLR ;;;;;; 122.18 0.0059019 12798854000 3039565 3770268 3048002 1147569 3747329 3352146 3751242 3719593 3063134 3041119 TRUE FALSE FALSE 2826507.19 3471498.233 4228270.003 2671598.627 3277304.054 2938592.309 2812641.575 2872722.872 3328648.921 2279603.008 1.239912028 1.522852102 1.854827348 1.171957844 1.437664384 1.28908073 1.233829559 1.260185595 1.460187984 1 21.12035117 -5.30064326 24.9999133 1.282478268 1.537563222 0.314500146 0.184404121 650.0111018 414504.0643 0.051098571 0.075792753 5.00E-06 5.30064326 0.255084955 VLS(ph)PLRS(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_A485_30min_R1 7 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VLS(1)PLRS(1)PPLIGSESAYESFLSADDK;VLS(1)PLRS(1)PPLIGSESAYESFLSADDK;VLS(1)PLRS(1)PPLIGSESAYESFLSADDK;VLS(1)PLRS(0.998)PPLIGS(0.002)ESAYESFLSADDK;VLS(0.934)PLRS(0.938)PPLIGS(0.055)ES(0.059)AY(0.012)ES(0.002)FLSADDK;VLS(1)PLRS(0.865)PPLIGS(0.133)ES(0.003)AYESFLSADDK;VLS(1)PLRS(1)PPLIGSESAYESFLSADDK ;;;;;; 218.01 5.39E-38 2554312000 448305.8 351026.1 260597.4 653561.1 456149.4 373930 577854.3 407520.2 354511.8 870550 TRUE FALSE FALSE 548029.8786 392075.5489 357003.2226 689263.488 410733.5641 393508.3966 454391.0082 307575.232 425659.0665 653537.9063 0.838558672 0.599927786 0.546262457 1.054664896 0.628477033 0.602120233 0.695278734 0.470631051 0.651315038 1 19.31791139 -10.18344644 5.288171997 1.000015753 0.672325585 0.27882082 0.156029037 2.92E-05 4.51E-06 0.152313093 0.036939577 6.55E-11 10.18344644 -0.327690168 VLS(ph)PLRS(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_A486_30min_R1 6 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VLS(0.983)PLRS(0.961)PPLIGS(0.041)ES(0.01)AY(0.004)ES(0.001)FLSADDK;VLS(1)PLRS(1)PPLIGSESAYESFLSADDK;VLS(1)PLRS(0.996)PPLIGS(0.004)ESAYESFLSADDK;VLS(0.991)PLRS(0.971)PPLIGS(0.024)ES(0.007)AY(0.005)ES(0.001)FLSADDK;VLS(1)PLRS(1)PPLIGSESAYESFLSADDK;VLS(1)PLRS(1)PPLIGSESAYESFLSADDK ;;;;; 221.13 4.33E-38 2945978000 879225 894032 458335.1 483161 739382 1039874 1136674 1099301 764959.9 1258480 TRUE FALSE FALSE 817595.8678 823185.6483 635814.7254 1124823.226 646641.8151 911584.9185 852266.1427 849014.1599 831267.24 943348.4167 0.866695543 0.87262101 0.673997766 1.192373047 0.685475063 0.966328986 0.903447896 0.90000062 0.881187932 1 19.84743119 -13.99999896 0.086835754 1.363426473 0.784509101 0.072278353 0.135829016 653.4633634 3.959759135 44.88280526 3.437582212 1.00E-14 13.99999896 -0.578917371 VLS(ph)PLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_A485_30min_R1 5 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VLS(1)PLRS(0.637)PPLIGS(0.303)ES(0.058)AY(0.001)ES(0.002)FLSADDKASGR;VLS(1)PLRS(0.999)PPLIGSESAYESFLSADDKASGR;VLS(0.999)PLRS(0.987)PPLIGS(0.009)ES(0.003)AY(0.001)ES(0.001)FLSADDKASGR;VLS(1)PLRS(1)PPLIGSESAYESFLSADDKASGR;VLS(1)PLRS(1)PPLIGSESAYESFLSADDKASGR ;;;; 103.41 0.00083355 1886633000 126777 157395.6 113186.4 133394.2 204997.6 201889.7 273983.1 326038 144021.1 204167.4 TRUE FALSE FALSE 154978.1063 175801.6463 155058.7594 140681.1874 184587.3192 212460.3325 215444.3724 246076.6693 172924.8137 153272.2246 1.011129751 1.146989591 1.011655959 0.917851801 1.204310302 1.386163299 1.405632188 1.605487687 1.12822016 1 17.22573676 -5.991133515 4.533893244 1.345969966 1.030757943 0.387869174 0.16351026 0.179869661 9.450287903 0.051717863 0.056386473 1.02E-06 5.991133515 -0.315212023 VLS(ph)PLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_A486_30min_R1 3 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VLS(0.999)PLRS(0.998)PPLIGS(0.001)ES(0.001)AY(0.001)ESFLSADDKASGR;VLS(1)PLRS(1)PPLIGSESAYESFLSADDKASGR;VLS(1)PLRS(0.999)PPLIGS(0.001)ESAYESFLSADDKASGR ;; 96.098 0.00032734 2672335000 79547 75194 51666 43746.6 99811 78831 104920 119017 60156 104920 TRUE FALSE FALSE 73971.16608 69235.35359 71672.45886 101844.2956 87291.77368 69105.63271 78667.90627 91919.42722 65370.37052 78647.34909 0.940542395 0.880326602 0.911314363 1.294948868 1.109913744 0.878677203 1.000261384 1.168754297 0.831183394 1 16.26311052 -5.058935225 24.99998011 1.046734114 0.90677736 0.178598354 0.127035391 408.8060893 173412.3929 0.035085352 0.060769803 8.73E-06 5.058935225 -0.139956753 VLS(ph)PLRSPPLIGS(ph)ESAYESFLSADDKASGR ddPTM_HeLa_A485_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VLS(0.99)PLRS(0.187)PPLIGS(0.358)ES(0.264)AYES(0.198)FLS(0.002)ADDKASGR 138.69 2.49E-06 448100000 153770 200010 145280 165380 268660 230070 341860 414370 185090 248470 TRUE FALSE FALSE 187975.606 223399.4296 199025.1176 174414.2906 241911.2671 242116.1094 268818.8183 312745.1078 222235.8653 186531.0018 1.00774458 1.197653085 1.066981444 0.935041838 1.29689577 1.297993938 1.441148205 1.676638762 1.19141517 1 17.5090559 -5.90589199 5.527842353 1.363727953 1.064433705 0.340821473 0.175644763 0.21615228 10.25827473 0.054521151 0.062101802 1.24E-06 5.90589199 -0.299294248 VLS(ph)PLRSPPLIGSES(ph)AYESFLSADDKASGR ddPTM_HeLa_A486_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VLS(0.992)PLRS(0.184)PPLIGS(0.225)ES(0.586)AYES(0.003)FLS(0.01)ADDKASGR 109.05 0.00052374 328410000 222040 186280 125970 129600 263230 181740 282930 319570 164000 295780 TRUE FALSE FALSE 206476.1426 171518.4944 174748.9576 301715.3496 230213.2389 159318.7666 212137.9215 246810.8872 178215.652 221714.7628 0.931269258 0.773599792 0.788170149 1.360826613 1.038330673 0.718575365 0.956805577 1.113191039 0.803805979 1 17.75834531 VLS(ph)PLRSPPLIGSESAYESFLSADDK ddPTM_HeLa_A486_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.48)PLRS(0.445)PPLIGS(0.032)ES(0.032)AY(0.003)ES(0.007)FLSADDK 51.9 0.018346 2454300000 34329 30827 18156 14686 27333 33094 40894 36630 28942 44074 TRUE FALSE FALSE 31922.71438 28384.15625 25186.48943 34189.75019 23904.64027 29011.19876 30661.88867 28290.14863 31450.71586 33037.58353 0.966254519 0.859147468 0.762358706 1.034874423 0.723558981 0.878127141 0.928091143 0.856301993 0.951967805 1 15.01182055 -7.933155644 3.651824552 0.999455644 0.87378797 0.187995171 0.085510541 0.32193035 8.55736419 0.078232314 0.020728377 1.17E-08 7.933155644 -0.125667674 VLS(ph)PPGRR ddPTM_HeLa_A485_30min_R1 1 VLSPPGRR 8 1 H0YBI6;H0YBQ0;Q86VQ6 H0YBI6 TXNRD3 Thioredoxin reductase 3 1 0 VLS(1)PPGRR 56.725 0.024096 142100000 55378 71191 66737 63007 84728 68710 78757 80998 60152 89388 TRUE FALSE FALSE 67696.64505 79516.16817 91425.79346 66448.91287 76292.18282 72307.54935 61929.92356 61133.1135 72223.95465 67105.21666 1.008813449 1.184947641 1.362424533 0.99021978 1.136903904 1.077525011 0.922877932 0.911003891 1.076279286 1 16.0341373 -6.300476497 1.40599818 0.971924776 1.15888826 0.318032191 0.106124727 0.479744581 1.908509586 0.051202721 0.044819581 5.01E-07 6.300476497 0.186963484 VLS(ph)PPGRR ddPTM_HeLa_A486_30min_R1 1 VLSPPGRR 8 1 H0YBI6;H0YBQ0;Q86VQ6 H0YBI6 TXNRD3 Thioredoxin reductase 3 1 0 VLS(1)PPGRR 52.49 0.02928 135410000 86263 94250 80908 37013 110260 94662 103300 107160 87881 107450 TRUE FALSE FALSE 80216.40916 86781.28675 112237.7444 86168.13453 96430.16267 82983.56489 77453.2474 82762.00729 95498.59584 80543.82062 0.99593499 1.077441895 1.393499135 1.069829242 1.197238496 1.030290893 0.961628674 1.027540122 1.185672533 1 16.29748629 -6.273987793 23.4323728 1.037785324 1.152366751 0.180151394 0.112389813 586.4384887 1095085.477 0.040447464 0.035952652 5.32E-07 6.273987793 0.114581428 VLS(ph)PPHIK ddPTM_HeLa_A485_30min_R1 4 VLSPPHIK 8 0 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 VLS(1)PPHIK;VLS(1)PPHIK;VLS(1)PPHIK;VLS(1)PPHIK ;;; 91.584 0.0026936 938440000 799510 696050 614380 978080 1008820 742810 976220 893140 699950 1181480 TRUE FALSE FALSE 977358.2412 777446.9927 841664.7285 1031510.034 908378.3386 781702.383 767642.622 674096.0146 840423.5447 886958.7795 1.101920702 0.876531143 0.948933308 1.162974038 1.024149441 0.881328875 0.865477224 0.760008278 0.947533937 1 19.75850753 -6.271827981 7.982002209 0.874078203 1.018525795 0.325403508 0.093402959 0.183907005 92.50988656 0.03301861 0.030306279 5.35E-07 6.271827981 0.144447592 VLS(ph)PPHIK ddPTM_HeLa_A486_30min_R1 4 VLSPPHIK 8 0 A0A0D9SG79;Q9NZ09-2;Q9NZ09;Q9NZ09-3;Q9NZ09-4 A0A0D9SG79 UBAP1 Ubiquitin-associated protein 1 1 0 VLS(1)PPHIK;VLS(1)PPHIK;VLS(1)PPHIK;VLS(1)PPHIK ;;; 88.681 0.0030585 1134490000 2185550 2488160 1574530 910230 2574780 2588510 2829380 2763750 2012960 2633790 TRUE FALSE FALSE 2032354.231 2290989.14 2184230.183 2119061.44 2251827.084 2269165.954 2121439.198 2134504.457 2187444.994 1974271.841 1.029419652 1.160422335 1.10634723 1.073338229 1.140586133 1.149368546 1.0745426 1.081160362 1.107975583 1 20.91288922 -9.270648874 0.617229131 0.990911099 1.108053251 0.391628264 0.038166755 7.549443263 2.697417089 0.202876064 0.015104628 5.36E-10 9.270648874 0.117142151 VLS(ph)PPK ddPTM_HeLa_A485_30min_R1 2 VLSPPK 6 0 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7ESQ0;K7EL01;Q5XUX1;Q5XUX1-2 Q9H6Z4-2;K7EL01 RANBP3;FBXW9 Ran-binding protein 3;F-box/WD repeat-containing protein 9 1 0 VLS(1)PPK;VLS(1)PPK ; 69.825 0.028735 613270000 524390 383270 295910 913930 493890 405330 639490 483360 377240 1108990 TRUE FALSE FALSE 641038.7464 428090.0925 405379.4228 963855.6817 444716.5774 426552.452 502857.7373 364815.2021 452948.6077 832539.2024 0.769980254 0.51419812 0.486919321 1.157730085 0.534168933 0.512351191 0.604004876 0.438195824 0.544056792 1 19.66715868 -10.1353403 5.094498592 1.000015126 0.615658369 0.247805907 0.19964803 3.50E-05 5.94E-06 0.197234193 0.047834437 7.32E-11 10.1353403 -0.384356757 VLS(ph)PPK ddPTM_HeLa_A486_30min_R1 4 VLSPPK 6 0 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7ESQ0;K7EL01;Q5XUX1;Q5XUX1-2 Q9H6Z4-2;K7EL01 RANBP3;FBXW9 Ran-binding protein 3;F-box/WD repeat-containing protein 9 1 0 VLS(1)PPK;VLS(1)PPK;VLS(1)PPK;VLS(1)PPK ;;; 94.302 0.014237 1808210000 1616810 1655630 738180 1279180 1211870 1933960 2347660 2092780 1308800 3190420 TRUE FALSE FALSE 1503479.968 1524431.849 1024023.065 2977995.686 1059865.964 1695367.678 1760250.637 1616299.679 1422247.838 2391518.066 0.6286718 0.637432713 0.428189559 1.24523236 0.443177068 0.708908581 0.73603903 0.675846736 0.594705036 1 21.18949526 -10.33317075 2.877972626 1.003830644 0.681453959 0.170420336 0.213255424 27612780.83 33434779.6 899176.6535 0.051549346 4.64E-11 10.33317075 -0.322376685 VLS(ph)PPKLNEVSSDANR ddPTM_HeLa_A485_30min_R1 6 VLSPPKLNEVSSDANR 16 1 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7ESQ0 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR ;;;;; 153.56 1.63E-08 11091030000 1558430 1342780 1056130 2713930 1908450 1543300 2373600 2022730 1342790 3541880 TRUE FALSE FALSE 1905097.377 1499806.44 1446836.436 2862185.124 1718438.017 1624104.802 1866460.969 1526652.296 1612275.636 2658954.499 0.716483632 0.564058708 0.544137343 1.076432532 0.646283348 0.610805789 0.701952956 0.574155104 0.606356986 1 21.34242766 -11.33443078 2.296341608 2.924235853 0.67175956 0.313852606 0.145851822 9343124.781 954066.8532 93791710.43 0.037452087 4.63E-12 11.33443078 -2.252476293 VLS(ph)PPKLNEVSSDANR ddPTM_HeLa_A486_30min_R1 5 VLSPPKLNEVSSDANR 16 1 Q9H6Z4-2;Q9H6Z4;B7Z7F3;Q9H6Z4-3;K7ESQ0 Q9H6Z4-2 RANBP3 Ran-binding protein 3 1 0 VLS(0.998)PPKLNEVS(0.002)SDANR;VLS(1)PPKLNEVSSDANR;VLS(0.999)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR;VLS(1)PPKLNEVSSDANR ;;;; 179.03 6.65E-18 10862910000 1991810 1998850 987450 1192400 1739950 2413960 2882640 2645740 1549760 3563790 TRUE FALSE FALSE 1852194.405 1840453.846 1369817.085 2775967.461 1521709.247 2116150.159 2161372.983 2043362.758 1684094.445 2671393.788 0.693343832 0.688948913 0.51277243 1.039145735 0.569631199 0.792152085 0.809080635 0.76490511 0.630417894 1 21.34916123 -14 0.277830103 2.943177101 0.708368779 0.257536624 0.139376933 313.4932462 3.018081385 351.4669393 0.157651214 1.00E-14 14 -2.234808322 VLS(ph)PTAAKPSPFEGK ddPTM_HeLa_A486_30min_R1 2 VLSPTAAKPSPFEGK 15 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 0 VLS(0.87)PT(0.13)AAKPSPFEGK;VLS(0.651)PT(0.349)AAKPSPFEGK ; 203.89 1.03E-25 9820700000 6554500 6340000 3160200 2813700 5738700 7170500 8441500 7943000 5252200 8097200 TRUE FALSE FALSE 6095063.397 5837595.31 4383914.073 6550435.797 5018898.735 6285876.614 6329347.415 6134552.294 5707464.925 6069608.416 1.004193842 0.961774617 0.722272966 1.079218847 0.826890038 1.035631326 1.04279337 1.010699847 0.94033495 1 22.53317201 -6.293893275 24.9563478 1.008866988 0.919239818 0.175730895 0.094122298 1140.23751 876814.3078 0.032332322 0.028516311 5.08E-07 6.293893275 -0.08962717 VLS(ph)TSTDLEAAVADALK ddPTM_HeLa_A485_30min_R1 1 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.25)T(0.25)S(0.25)T(0.25)DLEAAVADALK 63.037 0.013711 9052300 9903.5 7497.2 10245 17453 12722 9275.6 12938 8804.3 9374 24238 TRUE FALSE FALSE 12106.49941 8373.932323 14035.05183 18406.4132 11455.35301 9761.256073 10173.69061 6645.03162 11255.27582 18195.91267 0.665341697 0.460209525 0.771329918 1.011568561 0.629556386 0.536453227 0.559119556 0.365193642 0.618560664 1 14.15132679 -10.10918698 5.254306023 1.000007864 0.623100892 0.312734872 0.167145662 1.70E-05 2.87E-06 0.178183846 0.043215029 7.78E-11 10.10918698 -0.376906971 VLS(ph)TSTDLEAAVADALK ddPTM_HeLa_A486_30min_R1 2 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.33)T(0.33)S(0.33)T(0.011)DLEAAVADALK;VLS(0.25)T(0.25)S(0.25)T(0.25)DLEAAVADALK ; 104.41 0.00022385 34951000 37515.2 54711 33505.3 26191 51240 63416 66548 64961 45062.2 66261 TRUE FALSE FALSE 34885.57821 50375.50111 46479.44946 60973.97162 44813.00141 55592.37869 49896.98653 50170.79839 48968.22778 49668.81431 0.702363821 1.014227978 0.935787377 1.227610775 0.902236182 1.11926124 1.004593873 1.010106625 0.985894841 1 15.60005269 -4.038444205 2.006415249 1.029860691 0.424959912 0.54205261 0.087677204 1.236269526 3.112567689 0.021832631 1.68815048 9.15E-05 4.038444205 -0.60490078 VLSANHGDPSIQTSGSEQTS(ph)PK ddPTM_HeLa_A485_30min_R1 1 VLSANHGDPSIQTSGSEQTSPK 22 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 VLSANHGDPSIQTSGS(0.009)EQT(0.065)S(0.926)PK 185.84 1.02E-19 270380000 46449 60325 37656 58792 89105 46920 100720 87132 47709 111490 TRUE FALSE FALSE 56781.4198 67379.48399 51586.5214 62003.65809 80233.39333 49376.65865 79200.34919 65762.74038 57283.75869 83697.59482 0.678411607 0.805034889 0.616344132 0.740805733 0.958610501 0.58994119 0.946267923 0.785718401 0.684413439 1 16.35289854 -14 0.181263353 1.950997518 0.71354558 0.276354278 0.11802676 181.5270047 1.750947369 62.55199832 0.352779195 1.00E-14 14 -1.237451938 VLSANHGDPSIQTSGSEQTS(ph)PK ddPTM_HeLa_A486_30min_R1 1 VLSANHGDPSIQTSGSEQTSPK 22 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 VLSANHGDPSIQTSGSEQT(0.001)S(0.999)PK 168.26 4.51E-14 308240000 161210 144830 82189 24817 157260 133800 200570 208100 135240 152220 TRUE FALSE FALSE 149910.0115 133353.1433 114014.7819 57775.23018 137534.9844 117293.1164 150385.2646 160720.1728 146962.7121 114103.1212 1.313811663 1.168707235 0.999225794 0.506342242 1.205356899 1.027957124 1.317976783 1.40855194 1.287981525 1 16.79997873 -6.756682657 23.41411325 1.2876736 1.024719688 0.175225395 0.224632602 83.71592829 412081.9172 0.091850053 0.068667932 1.75E-07 6.756682657 -0.262953912 VLSAPPHFHFGQT(ph)NRTPEFLR ddPTM_HeLa_A486_30min_R1 2 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 0 VLSAPPHFHFGQT(0.512)NRT(0.488)PEFLR;VLSAPPHFHFGQT(0.5)NRT(0.5)PEFLR ; 262.97 5.26E-59 17220600000 1509540 1864560 1813410 229038 2527320 1660880 2015270 1934220 1676630 1315050 TRUE FALSE FALSE 1403729.041 1716805.475 2515610.917 533212.0389 2210319.959 1455977.512 1511028.131 1493840.33 1821961.638 985752.9205 1.424017127 1.741618452 2.551969022 0.540918549 2.242265697 1.477020744 1.532867009 1.515430793 1.848294436 1 19.91086655 -11.09315645 1.98208824 6.14E-05 1.653685244 0.130491052 0.505456721 3556960.803 928270.3679 16034523.41 0.12636835 8.07E-12 11.09315645 1.653623841 VLSAPPHFHFGQTNR ddPTM_HeLa_A485_30min_R1 2 VLSAPPHFHFGQTNR 15 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 109.14 0.00042626 69869000 46625 55605 67724 35563 81170 55793 63816 68138 63516 54919 FALSE FALSE TRUE 56996.5704 62107.52105 92777.92583 37505.71664 73088.42979 58714.23521 50181.19027 51427.04866 76263.0786 41228.70401 1.382448752 1.506414585 2.250323605 0.909699141 1.772755937 1.424110619 1.217142073 1.247360302 1.849756873 1 15.33136149 -5.272157645 24.97892213 1.371826859 1.692397576 0.184515436 0.35001014 1313.851309 3061929.224 0.095981015 0.143972288 5.34E-06 5.272157645 0.320570717 VLSAPPHFHFGQTNR ddPTM_HeLa_A486_30min_R1 2 VLSAPPHFHFGQTNR 15 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 124.25 2.64E-05 44477000 47718 55911 57943 5308.7 67818 47505 54442 51718 50119 39038 FALSE FALSE TRUE 44373.21462 51480.40874 80380.08137 12358.92189 59311.63406 41644.3161 40820.03577 39942.9404 54463.35527 29262.63071 1.516378177 1.759254294 2.746850827 0.422344867 2.026872931 1.423122771 1.394954411 1.364981187 1.861191354 1 14.83677185 -10.65087329 0.086456485 3.20E-09 2.248279191 0.099246369 0.557463944 222.6124469 3.02010058 69.04353651 19.826587 2.23E-11 10.65087329 2.248279188 VLSAPPHFHFGQTNRT(ph)PEFLR ddPTM_HeLa_A485_30min_R1 2 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 0 VLSAPPHFHFGQT(0.324)NRT(0.676)PEFLR;VLSAPPHFHFGQT(0.189)NRT(0.811)PEFLR ; 316.48 5.02E-102 16675300000 486590 868390 874740 416220 1077670 697870 910980 928880 734170 659610 TRUE FALSE FALSE 594830.2668 969940.6565 1198342.727 438957.0447 970373.3909 734409.3941 716341.681 701070.7236 881511.1848 495181.3662 1.201237178 1.958758392 2.420007716 0.886457114 1.959632282 1.483111935 1.446624873 1.415785753 1.780178425 1 18.9175975 -11.71620272 0.191353295 6.95E-13 1.770850943 0.162162929 0.413636758 89.34961409 1.929937628 38.74922528 1.205538744 1.92E-12 11.71620272 1.770850943 VLSAPPHFHFGQTNRT(ph)PEFLR ddPTM_HeLa_A486_30min_R1 2 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 0 VLSAPPHFHFGQT(0.034)NRT(0.966)PEFLR;VLSAPPHFHFGQT(0.462)NRT(0.538)PEFLR ; 118.22 3.90E-05 614272000 18218 24554 43734 10097 43059 15947 26067 24695 23457 14679 TRUE FALSE FALSE 16941.01228 22608.25162 60668.97604 23506.32627 37658.13871 13979.62128 19544.76089 19072.48759 25490.27165 11003.28286 1.539632535 2.054682399 5.513715937 2.136301191 3.422445756 1.270495493 1.776266333 1.733345206 2.316606051 1 13.4256464 -6.262351543 24.99435791 1.67498441 2.983612953 0.275025959 1.063225385 120.0396283 3289194.59 0.370468051 0.345711274 5.47E-07 6.262351543 1.308628543 VLSGEFQIVNPHLLK ddPTM_HeLa_A486_30min_R1 2 VLSGEFQIVNPHLLK 15 0 P23921;E9PL69 P23921 RRM1 Ribonucleoside-diphosphate reductase large subunit 0 0 ; ; 200.55 3.59E-16 49608000 96524 110188 86402 35428 115595 109087 122585 115960 100784 115327 FALSE FALSE TRUE 89758.16605 101456.3016 119859.1683 82478.17443 101095.9972 95628.95506 91912.93643 89558.43939 109520.0383 86448.36855 1.038286408 1.17360574 1.38648271 0.954074389 1.169437884 1.106197337 1.063211926 1.03597605 1.266883807 1 16.39955112 -5.280644908 24.95646623 1.090090324 1.196873091 0.173673076 0.113895458 1442.562312 1874522.924 0.031547953 0.046882881 5.24E-06 5.280644908 0.106782767 VLSIQSHVIR ddPTM_HeLa_A485_30min_R1 2 VLSIQSHVIR 10 0 O00764-2;O00764;A8MV33 O00764-2 PDXK Pyridoxal kinase 0 0 ; ; 154.84 3.98E-05 49826000 75828 124823 146166 51352 256720 67128 146431 101741 98641 138589 FALSE FALSE TRUE 92695.677 139419.964 200238.8859 54157.22973 231160.0554 70642.71828 115144.8206 76788.86023 118437.3439 104041.3128 0.890950666 1.34004426 1.924609373 0.520535817 2.221810251 0.678987186 1.106722104 0.738061239 1.13836841 1 16.66679698 VLSIQSHVIR ddPTM_HeLa_A486_30min_R1 2 VLSIQSHVIR 10 0 O00764-2;O00764;A8MV33 O00764-2 PDXK Pyridoxal kinase 0 0 ; ; 147.41 0.00021192 55566000 95146 70949 91018 12917.8 94632 53274 83190 87882 94019 65681 FALSE FALSE TRUE 88476.75673 65326.74285 126262.6071 30073.29123 82762.37215 46701.59553 62374.98211 67873.18705 102168.6426 49234.05009 1.79706436 1.326861039 2.564538301 0.610823021 1.680998659 0.948562945 1.266907394 1.37858224 2.075162259 1 15.5873688 -5.263876134 24.99997164 1.298256726 1.839225178 0.260183523 0.472407726 325.1344204 3335738.473 0.127233358 0.199175742 5.45E-06 5.263876134 0.540968452 VLSKPPEGVVSEVEMLS(ph)SQER ddPTM_HeLa_A485_30min_R1 1 VLSKPPEGVVSEVEMLSSQER 21 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VLSKPPEGVVSEVEMLS(0.606)S(0.394)QER 166.28 6.75E-14 120120000 70145 92417 74141 105090 115790 109680 119860 152190 90093 144970 TRUE FALSE FALSE 85748.51325 103224.3642 101568.8412 110830.8006 104261.541 115422.6752 94250.93183 114865.1639 108173.8387 108831.647 0.787900538 0.948477461 0.933265681 1.018369231 0.958007564 1.060561688 0.866025044 1.055438993 0.993955726 1 16.73173861 -3.416054243 1.020166932 0.990792192 1.03E-10 0.555415452 0.053605206 6.416663375 1.510347524 0.015949883 10.47563111 0.000383659 3.416054243 -0.990792192 VLSKPPEGVVSEVEMLS(ph)SQER ddPTM_HeLa_A486_30min_R1 2 VLSKPPEGVVSEVEMLSSQER 21 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VLSKPPEGVVSEVEMLS(0.554)S(0.446)QER;VLSKPPEGVVSEVEMLS(0.616)S(0.384)QER ; 164.13 7.95E-14 202210000 523005 605936 486059 177275 653852 551292 627845 628825 518736 635136 TRUE FALSE FALSE 486345.0503 557919.4246 674274.0619 412705.159 571839.7852 483279.1982 470751.5403 485655.2747 563700.4541 476093.8116 1.021531972 1.171868676 1.416263025 0.866856802 1.201107369 1.015092376 0.988778953 1.020083149 1.184011303 1 18.86088635 -5.270339551 24.99958921 1.043868832 1.200085976 0.258123723 0.127067165 902.0329892 2533709.066 0.035145972 0.053040771 5.37E-06 5.270339551 0.156217144 VLSKPPEGVVSEVEMLSS(ph)QER ddPTM_HeLa_A485_30min_R1 2 VLSKPPEGVVSEVEMLSSQER 21 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VLSKPPEGVVSEVEMLS(0.051)S(0.949)QER;VLSKPPEGVVSEVEMLS(0.13)S(0.87)QER ; 148.3 7.70E-10 324150000 310270 390480 332110 411720 456890 434490 548540 619140 419130 546290 TRUE FALSE FALSE 379288.4911 436143.2393 454971.3093 434211.2211 411400.4274 457239.2246 431339.9478 467294.9442 503245.5465 410109.9567 0.924845849 1.063478787 1.109388596 1.058767811 1.003146645 1.114918614 1.051766583 1.139438184 1.22709907 1 18.64565124 -6.819964266 1.463563967 1.130841618 1.041651326 0.179444195 0.072471056 0.676549977 2.918084979 0.044238792 0.024842511 1.51E-07 6.819964266 -0.089190292 VLSKPPEGVVSEVEMLSS(ph)QER ddPTM_HeLa_A486_30min_R1 2 VLSKPPEGVVSEVEMLSSQER 21 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VLSKPPEGVVSEVEMLS(0.249)S(0.751)QER;VLSKPPEGVVSEVEMLS(0.198)S(0.802)QER ; 187.75 1.21E-19 378910000 433890 425740 299546 151975 481510 460870 517650 530040 403340 567900 TRUE FALSE FALSE 403476.5516 392002.8119 415538.2333 353805.4804 421114.5259 404012.5452 388128.4949 409361.4627 438301.836 425694.1436 0.947808556 0.920855543 0.976142706 0.831126023 0.989242 0.949067661 0.911754368 0.961632827 1.029616786 1 18.69945772 -7.591489424 4.297553851 1.013474504 0.932599728 0.385214879 0.041204709 0.218399121 7.816930842 0.029524329 0.010308745 2.56E-08 7.591489424 -0.080874776 VLSLLSAPLGSGGFTLLHAAAAAGR ddPTM_HeLa_A486_30min_R1 1 VLSLLSAPLGSGGFTLLHAAAAAGR 25 0 Q9H8Y5;B8ZZS4 Q9H8Y5 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 0 0 217.86 9.14E-43 3978800 2387.8 2949.5 2566.4 839.51 4343.9 3017.5 3141.3 3118.1 2948.7 3437.2 FALSE FALSE TRUE 2220.427551 2715.770878 3560.178811 1954.421706 3799.047557 2645.23153 2355.313515 2408.176698 3204.29569 2576.502748 0.861799023 1.054053166 1.381787314 0.758556034 1.47449777 1.026675222 0.914151369 0.934668787 1.243660886 1 11.33119842 -6.493033417 24.98384045 1.010923997 1.114382437 0.033307791 0.215570045 2394.4122 2004390.132 0.074000585 0.065165504 3.21E-07 6.493033417 0.10345844 VLSNRGDS(ph)LSR ddPTM_HeLa_A485_30min_R1 5 VLSNRGDSLSR 11 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 VLSNRGDS(0.999)LS(0.001)R;VLSNRGDS(0.998)LS(0.002)R;VLSNRGDS(1)LSR;VLS(0.001)NRGDS(0.944)LS(0.055)R;VLSNRGDS(0.936)LS(0.064)R ;;;; 144.2 1.34E-05 1958940000 1285143 1880424 1971623 1201920 2518100 2153480 2868110 3498490 1846281 1732150 TRUE FALSE FALSE 1571018.627 2100323.229 2701008.394 1267577.846 2267389.122 2266232.883 2255314.868 2640479.842 2216812.662 1300356.883 1.208144201 1.615189843 2.07712854 0.974792277 1.743666798 1.742777627 1.734381459 2.030580894 1.704772506 1 20.31047619 VLSNRGDS(ph)LSR ddPTM_HeLa_A486_30min_R1 3 VLSNRGDSLSR 11 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 VLSNRGDS(0.995)LS(0.005)R;VLSNRGDS(0.999)LS(0.001)R;VLSNRGDS(0.999)LS(0.001)R ;; 148.18 3.73E-07 617220000 655995 579707 638560 244506 957634 622483 810646 905167 516764 774858 TRUE FALSE FALSE 610013.1381 533768.9061 885827.5332 569222.3246 837518.6141 545687.3764 607813.7967 699080.2338 561557.5196 580828.5133 1.050246543 0.918978483 1.525110274 0.980017874 1.441937844 0.939498258 1.046459984 1.203591452 0.966821543 1 19.14775275 VLSPLRS(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_A485_30min_R1 4 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.002)PLRS(0.998)PPLIGSESAYESFLSADDK;VLS(0.003)PLRS(0.997)PPLIGSESAYESFLSADDK;VLS(0.001)PLRS(0.996)PPLIGS(0.003)ESAYESFLSADDK;VLS(0.027)PLRS(0.972)PPLIGS(0.001)ESAYESFLSADDK ;;; 237.28 1.19E-49 4612404000 1104478 1068861 830564 1619491 1253867 1110047 1575129 1223480 1066242 2114130 TRUE FALSE FALSE 1350165.321 1193854.996 1137824.186 1707959.693 1129027.599 1168167.344 1238589.822 923419.6117 1280226.989 1587116.299 0.850703456 0.752216455 0.716912924 1.076140226 0.711370427 0.736031345 0.780402685 0.581822273 0.806637163 1 20.59797642 VLSPLRS(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_A486_30min_R1 3 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLSPLRS(1)PPLIGSESAYESFLSADDK;VLS(0.028)PLRS(0.919)PPLIGS(0.052)ESAYESFLSADDK;VLS(0.035)PLRS(0.922)PPLIGS(0.04)ES(0.002)AYESFLSADDK ;; 322.67 9.57E-107 3339500000 525504 550318 333071 263596 508610 552419 700957 598501 456144 741112 TRUE FALSE FALSE 488668.8833 506708.7975 462045.0112 613664.8094 444815.3912 484267.1604 525570.1446 462235.3875 495682.9292 555532.7314 0.879640129 0.912113308 0.83171519 1.10464204 0.8007006 0.871716702 0.946065128 0.832057881 0.89226593 1 19.08351239 VLSPLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_A485_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.125)PLRS(0.874)PPLIGS(0.001)ESAYESFLSADDKASGR 89.266 0.00034329 4789300000 13181 28848 16357 21366 28790 25629 31660 48032 20980 23521 TRUE FALSE FALSE 16113.06798 32221.52266 22408.13497 22533.17048 25923.56651 26970.89481 24895.58236 36252.07669 25190.49356 17657.64757 0.91252631 1.824791356 1.269032858 1.276113955 1.468121187 1.527434201 1.409903684 2.053052455 1.426605297 1 14.10800553 -5.986302888 4.005503371 1.542089382 1.35307904 0.037689629 0.318768843 0.638171011 23.40789465 0.100859859 0.110324751 1.03E-06 5.986302888 -0.189010342 VLSPLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_A486_30min_R1 4 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.001)PLRS(0.999)PPLIGSESAYESFLSADDKASGR;VLS(0.014)PLRS(0.986)PPLIGSESAYESFLSADDKASGR;VLS(0.157)PLRS(0.843)PPLIGSESAYESFLSADDKASGR;VLS(0.002)PLRS(0.998)PPLIGSESAYESFLSADDKASGR ;;; 153.65 4.28E-10 10141423000 99979.6 93560.3 75939 53940.4 142327 93780 131706 135003 75098.8 126793 TRUE FALSE FALSE 92971.54634 86146.24109 105344.6145 125575.9772 124475.0205 82210.37709 98751.76576 104265.764 81608.42445 95043.20752 0.978202954 0.906390297 1.108386567 1.321251465 1.309667716 0.864978984 1.039019708 1.097035409 0.858645521 1 16.5362959 -6.280396376 24.98248957 0.982193389 1.122651434 0.235326246 0.137110581 1560.998357 2057155.683 0.054139726 0.047834064 5.24E-07 6.280396376 0.140458044 VLSPLRSPPLIGS(ph)ESAYESFLSADDKASGR ddPTM_HeLa_A485_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.005)PLRS(0.11)PPLIGS(0.38)ES(0.025)AY(0.147)ES(0.333)FLSADDKASGR 121.15 1.57E-05 339230000 77904 105740 85932 71923 142990 124670 195400 238330 97342 124120 TRUE FALSE FALSE 95233.47603 118105.3732 117721.8227 75851.97137 128753.4135 131197.5284 153651.1937 179879.1938 116877.6465 93179.16826 1.022046857 1.267508343 1.263392075 0.814044306 1.381783246 1.408013517 1.648986534 1.930465759 1.254332365 1 16.50771983 -5.985929952 23.86814401 1.50525802 1.11423123 0.287672254 0.259522317 160.1084993 271601.831 0.079929298 0.090580298 1.03E-06 5.985929952 -0.39102679 VLSPLRSPPLIGSES(ph)AYESFLSADDKASGR ddPTM_HeLa_A486_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLSPLRS(0.087)PPLIGS(0.13)ES(0.583)AYES(0.196)FLS(0.005)ADDKASGR 190.44 3.62E-21 454320000 150640 115970 103840 64854 178990 131890 191450 186200 111550 163920 TRUE FALSE FALSE 140080.9139 106780.1148 144049.6289 150983.3895 156539.4052 115618.7528 143547.185 143806.3247 121219.2438 122873.3651 1.140042953 0.869025722 1.172342182 1.228772317 1.27398973 0.940958626 1.168253063 1.170362061 0.986538 1 16.90681269 -9.870396845 14.07725548 0.999961021 1.108075225 0.060630958 0.124335245 0 0 0.122336289 0.029670908 1.35E-10 9.870396845 0.108114204 VLSPLRSPPLIGSESAYES(ph)FLSADDKASGR ddPTM_HeLa_A486_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLSPLRS(0.01)PPLIGS(0.002)ES(0.037)AYES(0.545)FLS(0.406)ADDKASGR 197.66 7.30E-29 286690000 175430 127300 103010 67474 199650 131720 193610 220390 111210 189340 TRUE FALSE FALSE 163133.2629 117212.2844 142898.2307 157082.8819 174608.0353 115469.7256 145166.7302 170212.0081 120849.7723 141928.0316 1.149408338 0.825857183 1.006835853 1.106778416 1.23025757 0.81357942 1.022819302 1.199283934 0.851486285 1 17.11480003 -6.617283357 0.003726733 0.475641009 1.568608945 0.004964731 0.144520207 356603.8056 700.9852259 102065.6908 103499.6895 2.41E-07 6.617283357 1.092967936 VLSPT(ph)AAKPSPFEGK ddPTM_HeLa_A485_30min_R1 1 VLSPTAAKPSPFEGK 15 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 0 VLS(0.19)PT(0.81)AAKPSPFEGK 117.3 0.00014384 4539000000 5818500 4304800 3132000 7395500 6705400 6586400 8486200 8154500 5011900 9829000 TRUE FALSE FALSE 7112805.251 4808208.913 4290657.133 7799497.439 6037786.832 6931253.719 6673054.044 6154596.089 6017742.358 7378811.189 0.963950028 0.65162379 0.581483524 1.057012741 0.818260107 0.939345586 0.904353543 0.834090469 0.815543616 1 22.81495697 -5.258638995 24.99962232 0.900077827 0.724279591 0.321915898 0.117251559 296.9832705 2651219.011 0.031872052 0.052199126 5.51E-06 5.258638995 -0.175798236 VLSQSTPGT(ph)PSK ddPTM_HeLa_A485_30min_R1 1 VLSQSTPGTPSK 12 0 Q6MZP7-3;Q6MZP7 Q6MZP7-3 LIN54 Protein lin-54 homolog 1 0 VLSQST(0.002)PGT(0.994)PS(0.003)K 104.95 0.001346 0 237810 291050 231900 275630 378140 328710 339880 385750 283320 370070 TRUE FALSE FALSE 290710.0141 325085.7657 317689.4602 290686.969 340491.0539 345920.7473 267261.8614 291144.2077 340179.7252 277818.3596 1.046403177 1.170137806 1.143514995 1.046320226 1.225588742 1.245132783 0.962002158 1.047966045 1.224468123 1 18.08378242 -13.2726269 0.39843928 1.06E-10 1.125272126 0.137816514 0.090694162 833.6020076 10.62528261 710.5203394 0.059288941 5.34E-14 13.2726269 1.125272126 VLSSAASLPGSELPSSRPEGSQGGELS(ph)R ddPTM_HeLa_A486_30min_R1 2 VLSSAASLPGSELPSSRPEGSQGGELSR 28 1 O15027;O15027-5;A0A0C4DH09;Q8N9G1 O15027 SEC16A Protein transport protein Sec16A 1 0 VLSSAASLPGSELPSSRPEGS(0.005)QGGELS(0.995)R;VLSSAASLPGSELPSSRPEGS(0.01)QGGELS(0.99)R ; 148.13 1.79E-09 633140000 73382 82069 78238 25803 104733 63030 85530 82575 58626 76248 TRUE FALSE FALSE 68238.30075 75565.55355 108533.8489 60070.68801 91596.41054 55253.99944 64129.48936 63774.4751 63707.74888 57155.00451 1.193916462 1.322116133 1.898938681 1.051013617 1.602596506 0.966739482 1.122027544 1.115816115 1.114648655 1 15.80259221 -6.269666441 24.99227675 1.074721185 1.415434037 0.387796925 0.219579437 683.7288949 2077034.768 0.075032628 0.067264444 5.37E-07 6.269666441 0.340712852 VLSSIEQK ddPTM_HeLa_A485_30min_R1 1 VLSSIEQK 8 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 169.57 8.98E-05 54147000 68453 69905 66962 78599 103050 82273 110920 110920 70942 124180 FALSE FALSE TRUE 83680.13369 78079.78166 91734.03032 82892.66435 92789.98017 86580.68706 87221.03587 83716.69608 85179.40868 93224.21136 0.897622329 0.83754832 0.984015086 0.889175281 0.995342077 0.928736063 0.935604974 0.898014527 0.913704792 1 16.50841707 -4.753791429 24.99987398 0.938594691 0.867585323 0.363666066 0.039589153 182.5056175 596566.2464 0.009606982 0.024415763 1.76E-05 4.753791429 -0.071009369 VLSST(ph)SEEDEPGVVK ddPTM_HeLa_A485_30min_R1 1 VLSSTSEEDEPGVVK 15 0 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 VLS(0.02)S(0.072)T(0.625)S(0.284)EEDEPGVVK 124.09 0.00014114 84794000 46793 61980 72659 60090 87604 58031 70270 79004 53492 77929 TRUE FALSE FALSE 57201.94142 69228.02185 99538.58769 63372.56454 78881.83816 61069.41343 55256.24045 59628.14513 64227.35374 58502.73448 0.977765261 1.183329676 1.701434789 1.083241067 1.348344464 1.043872803 0.944506969 1.01923689 1.097852166 1 15.83621644 -6.334692544 6.206249398 1.015177208 1.269136798 0.297615242 0.18235862 0.30672358 20.80579755 0.06603958 0.058216174 4.63E-07 6.334692544 0.25395959 VLSSTS(ph)EEDEPGVVK ddPTM_HeLa_A485_30min_R1 3 VLSSTSEEDEPGVVK 15 0 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 VLSST(0.008)S(0.991)EEDEPGVVK;VLSS(0.003)T(0.029)S(0.967)EEDEPGVVK;VLS(0.002)S(0.03)T(0.161)S(0.808)EEDEPGVVK ;; 147.39 6.97E-08 1146730000 1804510 1847970 1467060 2363520 2417780 2078510 2942860 3066170 1892880 3361470 TRUE FALSE FALSE 2205917.024 2064074.016 2009786.543 2492633.113 2177057.334 2187337.57 2314093.92 2314187 2272763.653 2523517.392 0.874143777 0.817935324 0.796422703 0.987761416 0.862707481 0.866781254 0.917011282 0.917048167 0.900633243 1 21.2670046 -13.99999942 0.044112672 1.54435162 0.587419225 0.437237276 0.046579434 668.4741916 2.189275639 45.35312671 12.04775933 1.00E-14 13.99999942 -0.956932395 VLSSTS(ph)EEDEPGVVK ddPTM_HeLa_A486_30min_R1 5 VLSSTSEEDEPGVVK 15 0 Q8NI08-7;Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3 Q8NI08-7 NCOA7 Nuclear receptor coactivator 7 1 0 VLSST(0.048)S(0.952)EEDEPGVVK;VLS(0.004)S(0.004)T(0.041)S(0.95)EEDEPGVVK;VLSST(0.005)S(0.995)EEDEPGVVK;VLSST(0.014)S(0.986)EEDEPGVVK;VLSS(0.003)T(0.182)S(0.815)EEDEPGVVK ;;;; 276.1 7.79E-56 1166780000 3610770 3983450 2381120 1494350 3858550 3971480 4989710 4723010 2937720 5017890 TRUE FALSE FALSE 3357673.669 3667786.915 3303153.433 3478922.32 3374574.679 3481519.177 3741231.782 3647683.726 3192363.935 3761377.683 0.892671237 0.975117955 0.878176485 0.924906408 0.89716454 0.925596808 0.99464401 0.969773321 0.848721985 1 21.84282975 -6.539256628 24.95278114 0.952102299 0.915253597 0.143180067 0.045817626 513.3155876 782062.8587 0.017075063 0.013229657 2.89E-07 6.539256628 -0.036848702 VLST(ph)STDLEAAVADALK ddPTM_HeLa_A486_30min_R1 2 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.065)T(0.467)S(0.467)T(0.001)DLEAAVADALK;VLS(0.079)T(0.547)S(0.359)T(0.014)DLEAAVADALK ; 120.7 0.00022194 223300000 147998 162678 105928 80461 160761 201890 226190 212550 151214 233050 TRUE FALSE FALSE 137624.1045 149786.8028 146946.1585 187317.2743 140596.8563 176982.8645 169594.8696 164157.0049 164321.3513 174692.7631 0.787806558 0.857429925 0.841169124 1.072266939 0.804823588 1.013109309 0.970817947 0.939689785 0.940630558 1 17.41446032 -5.062790986 15.70633055 0.956387768 0.829286003 0.456997002 0.066908155 4.262567529 1065.705504 0.017132063 0.02967848 8.65E-06 5.062790986 -0.127101765 VLSTS(ph)TDLEAAVADALK ddPTM_HeLa_A485_30min_R1 2 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.01)T(0.093)S(0.884)T(0.013)DLEAAVADALK;VLST(0.016)S(0.982)T(0.001)DLEAAVADALK ; 260.25 1.44E-51 170534000 145831 110839 111542 240540 183347 115245 188154 127513 134108 306880 TRUE FALSE FALSE 178270.6028 123800.6569 152806.0274 253680.0911 165092.3289 121279.05 147953.3608 96240.23682 161022.2455 230380.4637 0.77380955 0.537374806 0.663276846 1.101135431 0.71660733 0.526429403 0.642213139 0.417744783 0.698940539 1 17.81365886 -8.044407576 22.89845434 1.000000004 0.669984279 0.240536172 0.173631499 5980.500564 3083799.181 0.179363166 0.04631137 9.03E-09 8.044407576 -0.330015725 VLSTS(ph)TDLEAAVADALK ddPTM_HeLa_A486_30min_R1 1 VLSTSTDLEAAVADALK 17 0 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.014)T(0.124)S(0.847)T(0.014)DLEAAVADALK 138.39 3.63E-06 27317000 42713 46660 35320 23692 51525 58029 65771 58879 44353 66363 TRUE FALSE FALSE 39719.03927 42962.49167 48996.8499 55156.17333 45062.25405 50869.97198 49314.40015 45473.53702 48197.55375 49745.27285 0.798448516 0.863649734 0.984954893 1.108772154 0.905860024 1.022609166 0.991338419 0.914127804 0.968887112 1 15.60227182 -4.646376484 3.417367694 0.9871623 0.810407239 0.586016333 0.053671638 0.162342719 3.56716069 0.014328743 0.046287878 2.26E-05 4.646376484 -0.176755061 VLSTS(ph)TDLEAAVADALKKPVR ddPTM_HeLa_A485_30min_R1 2 VLSTSTDLEAAVADALKKPVR 21 2 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.001)T(0.107)S(0.873)T(0.019)DLEAAVADALKKPVR;VLS(0.002)T(0.014)S(0.968)T(0.016)DLEAAVADALKKPVR ; 133.1 6.15E-07 265080000 87553 104400 82195 101520 128990 130960 168110 186480 112390 149920 TRUE FALSE FALSE 107028.8628 116608.6718 112602.3509 107065.7805 116147.3027 137816.8631 132191.9252 140745.4876 134945.6421 112547.7031 0.950964434 1.0360822 1.000485553 0.951292453 1.031982879 1.224519553 1.174541297 1.250540738 1.199008406 1 16.78017709 -6.149106734 4.506702899 1.185261117 0.989913143 0.625916435 0.067889177 0.136214996 4.479792489 0.021618984 0.021654764 7.09E-07 6.149106734 -0.195347974 VLSTS(ph)TDLEAAVADALKKPVR ddPTM_HeLa_A486_30min_R1 2 VLSTSTDLEAAVADALKKPVR 21 2 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLST(0.002)S(0.997)T(0.001)DLEAAVADALKKPVR;VLST(0.001)S(0.826)T(0.174)DLEAAVADALKKPVR ; 295.68 2.31E-87 1870580000 735800 654810 395072 329607 777930 779910 1004100 971720 522230 1115140 TRUE FALSE FALSE 684224.2197 602920.4708 548054.4588 767341.7534 680354.7655 683692.6337 752863.5597 750480.5685 567497.3169 835901.6857 0.818546285 0.721281559 0.655644639 0.917980866 0.813917207 0.817910342 0.900660416 0.897809613 0.678904381 1 19.67297374 -5.26476058 24.99456914 0.854660252 0.730769901 0.312614251 0.087435828 352.6496585 2653960.187 0.023588224 0.036676829 5.44E-06 5.26476058 -0.12389035 VLSTS(ph)TDLEAAVADALKKPVRR ddPTM_HeLa_A485_30min_R1 1 VLSTSTDLEAAVADALKKPVRR 22 3 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLST(0.002)S(0.886)T(0.112)DLEAAVADALKKPVRR 171.79 3.90E-14 103300000 62825 125360 53877 43368 114140 186600 229490 482570 72538 66492 TRUE FALSE FALSE 76800.20451 140019.7615 73808.34431 45737.08403 102775.8208 196370.0875 180457.5867 364218.9509 87095.71124 49916.76809 1.538565244 2.805064648 1.478628267 0.916266933 2.058943813 3.933950353 3.615169684 7.296525091 1.744818717 1 15.60723691 -6.221937662 4.359032225 3.928849541 1.726179193 0.206692145 1.635007274 0.277288808 12.12051808 0.543992897 0.528342614 6.00E-07 6.221937662 -2.202670348 VLT(ph)PEEQLADK ddPTM_HeLa_A485_30min_R1 4 VLTPEEQLADK 11 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 VLT(1)PEEQLADK;VLT(1)PEEQLADK;VLT(1)PEEQLADK;VLT(1)PEEQLADK ;;; 162.88 3.21E-07 1016750000 958240 635520 436785 1739090 734570 515070 915650 616960 587580 1921300 TRUE FALSE FALSE 1171397.182 709838.5357 598369.9476 1834092.083 661433.6316 542038.2688 720013.8973 465649.5926 705501.9164 1442355.269 0.812141923 0.492138484 0.414856146 1.271595232 0.458578858 0.375800803 0.499193169 0.322839735 0.489131861 1 20.45999513 VLT(ph)PEEQLADK ddPTM_HeLa_A486_30min_R1 3 VLTPEEQLADK 11 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 VLT(1)PEEQLADK;VLT(1)PEEQLADK;VLT(1)PEEQLADK ;; 228.33 1.51E-17 863060000 793262 784027 241518.5 325344.5 429557.1 906390 942507 787425 563528 1275864 TRUE FALSE FALSE 737658.4302 721897.8451 335040.9313 757418.438 375678.0431 794568.8173 706681.7798 608145.5169 612375.0608 956379.3499 0.771303176 0.754823748 0.350322214 0.791964442 0.392812792 0.830809257 0.738913675 0.635883153 0.640305608 1 19.86722345 VLT(ph)PEEQLADKLR ddPTM_HeLa_A485_30min_R1 6 VLTPEEQLADKLR 13 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR ;;;;; 221.47 2.61E-27 3217820000 3640940 3299040 2198230 5158360 4185340 3727880 5605910 5383560 2952980 6685930 TRUE FALSE FALSE 4450854.542 3684834.03 3011446.753 5440148.145 3768632.854 3923066.032 4408161.532 4063233.469 3545616 5019250.696 0.886756771 0.734140264 0.599979347 1.08385663 0.750835749 0.781603923 0.878250918 0.809529891 0.706403448 1 22.25904058 -10.49651986 3.097331034 1.005405651 0.803890222 0.188044267 0.122502736 93336095.49 108996048.2 4282639.063 0.030902228 3.19E-11 10.49651986 -0.201515429 VLT(ph)PEEQLADKLR ddPTM_HeLa_A486_30min_R1 7 VLTPEEQLADKLR 13 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR ;;;;;; 212.72 4.10E-22 4160150000 2771333 2513470 1195401 1414038 2091140 2936984 3679939 3377165 1926000 4270666 TRUE FALSE FALSE 2577076.868 2314293.483 1658292.281 3291951.926 1828849.722 2574648.775 2759179.34 2608258.252 2092947.231 3201263.436 0.805018681 0.722931283 0.518011814 1.028328968 0.571289979 0.804260201 0.861903244 0.814759018 0.653787879 1 21.61020997 -14 0.258376965 2.543783945 0.735304831 0.209726183 0.140711688 303.2890981 2.989077667 248.6791194 0.184036657 1.00E-14 14 -1.808479114 VLT(ph)PELYAELR ddPTM_HeLa_A485_30min_R1 2 VLTPELYAELR 11 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 1 0 VLT(1)PELYAELR;VLT(1)PELYAELR ; 135.02 0.00012247 54130000 52912 50686 42664 71697 75785 53741 79386 82769 47098 87138 TRUE FALSE FALSE 64682.09186 56613.28679 58447.189 75613.62556 68239.5793 56554.79566 62424.53258 62469.77297 56550.13659 65416.10026 0.988779392 0.865433533 0.89346795 1.155887087 1.043161837 0.864539394 0.954268633 0.954960212 0.864468172 1 15.99735814 -9.390594031 13.18223951 1 0.955488743 0.023825357 0.088016562 0 0 0.090163509 0.021867863 4.07E-10 9.390594031 -0.044511257 VLT(ph)PELYAELR ddPTM_HeLa_A486_30min_R1 3 VLTPELYAELR 11 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 1 0 VLT(1)PELYAELR;VLT(1)PELYAELR;VLT(1)PELYAELR ;; 147.24 3.98E-06 94040000 113198 125738 84911 57858 134884 128100 164739 153449 97596 146835 TRUE FALSE FALSE 105263.4048 115774.063 117790.8132 134696.348 117965.591 112296.3244 123519.5598 118512.0125 106055.6999 110066.5603 0.956361355 1.051855011 1.070178017 1.223771758 1.071765945 1.020258325 1.122226037 1.076730409 0.963559682 1 16.7480167 -7.754151383 24.45841872 0.981779834 1.077983204 0.240284472 0.065409132 164.7812442 553022.6368 0.048311889 0.017395582 1.76E-08 7.754151383 0.09620337 VLTANSNPSS(ph)PSAAK ddPTM_HeLa_A485_30min_R1 4 VLTANSNPSSPSAAK 15 0 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANSNPS(0.069)S(0.923)PS(0.009)AAK;VLTANSNPS(0.003)S(0.995)PS(0.003)AAK;VLTANSNPS(0.001)S(0.997)PS(0.002)AAK;VLTANSNPS(0.062)S(0.937)PSAAK ;;; 306.2 4.43E-68 2362190000 6307720 5456460 4977130 7908150 7054250 5535010 7686060 6284870 5438000 9409010 TRUE FALSE FALSE 7710850.553 6094545.532 6818377.503 8340152.21 6351904.101 5824814.565 6043870.492 4743495.778 6529356.72 7063516.967 1.091644656 0.862820258 0.965294985 1.180736487 0.899255163 0.824633761 0.855646064 0.67154872 0.92437758 1 22.75195526 -5.989291755 24.97790183 0.83776121 1.013099779 0.34195091 0.110037815 236.2765384 551131.6587 0.033841064 0.038337468 1.02E-06 5.989291755 0.175338569 VLTANSNPSS(ph)PSAAK ddPTM_HeLa_A486_30min_R1 4 VLTANSNPSSPSAAK 15 0 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANSNPS(0.095)S(0.905)PSAAK;VLTANSNPS(0.078)S(0.919)PS(0.003)AAK;VLTANSNPSS(1)PSAAK;VLTANSNPS(0.002)S(0.998)PSAAK ;;; 317.31 4.40E-78 2532210000 5405540 5973240 3560790 2078850 5395480 6072480 6572510 6600550 4611090 6664290 TRUE FALSE FALSE 5026639.56 5499898.708 4939623.249 4839667.859 4718728.588 5323319.158 4927998.481 5097748.854 5010782.994 4995508.407 1.006231829 1.100968762 0.988812919 0.968803866 0.944594264 1.065621099 0.986485875 1.020466475 1.003057664 1 22.25220008 -4.791003671 24.9999337 0.997124915 1.053600367 0.273402223 0.036757855 228.5372729 193253.6271 0.009560478 0.019906605 1.62E-05 4.791003671 0.056475452 VLTANSNPSS(ph)PSAAKR ddPTM_HeLa_A485_30min_R1 2 VLTANSNPSSPSAAKR 16 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANSNPS(0.025)S(0.951)PS(0.025)AAKR;VLTANSNPS(0.236)S(0.713)PS(0.051)AAKR ; 175.59 7.51E-13 2419900000 768920 888070 640480 688990 1018100 909510 1055610 1026330 726150 907650 TRUE FALSE FALSE 939963.6013 991922.0613 877420.2046 726627.7791 916734.3892 957130.5372 830070.3 774620.9583 871881.6444 681389.5591 1.379480488 1.455734166 1.28769247 1.066391126 1.345389546 1.404674499 1.218202259 1.1368254 1.279564139 1 19.37812032 -14 0.066352683 7.05E-10 1.664216197 0.460254339 0.104905343 339.4021924 1.626996911 52.95919154 7.320106263 1.00E-14 14 1.664216197 VLTANSNPSS(ph)PSAAKR ddPTM_HeLa_A486_30min_R1 3 VLTANSNPSSPSAAKR 16 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANS(0.001)NPS(0.113)S(0.87)PS(0.016)AAKR;VLTANSNPS(0.185)S(0.812)PS(0.002)AAKR;VLTANSNPS(0.177)S(0.801)PS(0.022)AAKR ;; 172.83 1.48E-12 2967560000 1453050 1391700 912460 504950 1515710 1230830 1570370 1650110 1012930 1724440 TRUE FALSE FALSE 1351198.699 1281416.624 1265788.949 1175549.119 1325595.518 1078982.709 1177446.816 1274415.975 1100731.588 1292629 1.045310525 0.991325913 0.979236075 0.909424993 1.025503465 0.834719559 0.910893084 0.985910091 0.851544866 1 20.30187683 -4.250236865 0.729886432 0.92421666 1.119016576 0.287004665 0.057999826 3.627358191 1.460818472 0.023218585 0.586768979 5.62E-05 4.250236865 0.194799915 VLTEIIAS(ph)RTPEELR ddPTM_HeLa_A485_30min_R1 1 VLTEIIASRTPEELR 15 1 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 1 0 VLT(0.001)EIIAS(0.499)RT(0.499)PEELR 53.001 0.022208 34000000 19177 25619 26377 16981 36049 25538 28809 33126 22342 26880 TRUE FALSE FALSE 23442.85749 28614.91919 36134.94994 17908.62903 32459.83498 26875.13019 22653.7218 25001.79656 26825.83447 20179.31069 1.161727368 1.41803254 1.790692977 0.887474766 1.608570059 1.331816067 1.122621191 1.238981695 1.329373182 1 14.30058927 -8.790714951 0.277608565 0.909075805 1.410452877 0.155274907 0.237021523 9.26902068 1.281361073 1.356909508 0.365871341 1.62E-09 8.790714951 0.501377072 VLTEIIASR ddPTM_HeLa_A485_30min_R1 2 VLTEIIASR 9 0 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 115.7 0.028728 71280000 66981 98722 89896 65032 99098 79368 90535 109540 82055 88283 FALSE FALSE TRUE 81880.69237 110266.6791 123152.2713 68584.53349 89231.45517 83523.58575 71191.45765 82675.14325 98522.68585 66275.67283 1.235456222 1.663757974 1.858182136 1.034837227 1.346368152 1.260245007 1.074171783 1.247443288 1.486558818 1 16.01619179 -5.268950131 24.99728267 1.219879213 1.593594701 0.430596994 0.199127438 536.8769497 1786833.391 0.055567246 0.084298307 5.38E-06 5.268950131 0.373715488 VLTEIIASR ddPTM_HeLa_A486_30min_R1 1 VLTEIIASR 9 0 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 152.79 0.0024554 52470000 21343 23398 22229 12362 38171 15027 20783 23390 19778 20681 FALSE FALSE TRUE 19846.96592 21543.85727 30836.66411 28779.36074 33383.23725 13173.12152 15582.87358 18064.6076 21492.37296 15502.34299 1.28025589 1.389716205 1.989161518 1.856452329 2.153431728 0.849750359 1.005194737 1.16528241 1.386395139 1 13.92019866 -6.271400127 24.93091867 1.086896561 1.735687955 0.587630509 0.27327021 537.4279874 1345133.453 0.104273134 0.093037366 5.35E-07 6.271400127 0.648791394 VLTEIIASRT(ph)PEELR ddPTM_HeLa_A485_30min_R1 1 VLTEIIASRTPEELR 15 1 P08758;E9PHT9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 1 0 VLTEIIAS(0.089)RT(0.911)PEELR 97.284 0.00090353 40108000 24234 33653 36194 27196 50246 31047 40379 47622 30631 35780 TRUE FALSE FALSE 29624.76969 37588.42561 49583.66676 28681.64862 45243.33182 32672.57291 31751.69678 35942.62983 36778.36074 26860.70448 1.102903675 1.399383461 1.845955559 1.067792121 1.684368772 1.216370663 1.182087268 1.338111957 1.369225471 1 14.71320952 VLTLAALLLNR ddPTM_HeLa_A485_30min_R1 1 VLTLAALLLNR 11 0 Q9UK73 Q9UK73 FEM1B Protein fem-1 homolog B 0 0 98.044 0.017179 1478100 1758.2 1822.9 2695.7 1926.8 2384.8 1872.1 2321.6 2276.1 1484.3 2513.3 FALSE FALSE TRUE 2149.305524 2036.072298 3692.951607 2032.056205 2147.360938 1970.120261 1825.571194 1717.882906 1782.185395 1886.780564 1.139139106 1.079125118 1.957276685 1.076996575 1.138108469 1.044170318 0.96755883 0.910483677 0.944564211 1 10.88171093 -5.497065199 24.99631021 1.006907835 1.386668443 0.37443204 0.226898643 817.1739416 791302.879 0.065288713 0.096419399 3.18E-06 5.497065199 0.379760608 VLTLAALLLNR ddPTM_HeLa_A486_30min_R1 2 VLTLAALLLNR 11 0 Q9UK73 Q9UK73 FEM1B Protein fem-1 homolog B 0 0 ; ; 118.18 0.0041743 2908100 4524.3 3605.4 3924.4 1728.73 4489 3843.6 3807.5 4566.5 3610.1 4544.7 FALSE FALSE TRUE 4207.169934 3319.694973 5444.032779 4024.570805 3925.947762 3369.415711 2854.823228 3526.807636 3923.026375 3406.677539 1.234977448 0.974467039 1.598047575 1.181377092 1.152427172 0.989062121 0.838008058 1.035263125 1.151569625 1 11.73414968 -6.023751112 2.56457414 0.995523134 1.252262865 0.346959922 0.158930248 0.336951783 4.43788309 0.057183259 0.061371699 9.47E-07 6.023751112 0.256739731 VLTLS(ph)DDLER ddPTM_HeLa_A485_30min_R1 1 VLTLSDDLER 10 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 1 0 VLTLS(1)DDLER 207.95 4.70E-14 67970000 116630 143750 146790 116980 160820 166910 163240 174550 123390 151120 TRUE FALSE FALSE 142573.9411 160560.312 201093.7294 123370.3212 144808.1961 175649.1495 128362.4405 131741.3388 148153.2412 113448.5652 1.256727583 1.415269658 1.772554189 1.087455985 1.276421574 1.54827123 1.131459356 1.161242882 1.305906699 1 16.79167884 -7.71190615 0.322798796 0.972761408 1.453063292 0.272066489 0.187572115 2.065312485 0.715376304 0.3708394 0.270667365 1.94E-08 7.71190615 0.480301884 VLTLSERPLDFLDLERPPT(ph)TPQNEEIR ddPTM_HeLa_A485_30min_R1 2 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 VLTLSERPLDFLDLERPPT(0.5)T(0.5)PQNEEIR;VLTLSERPLDFLDLERPPT(0.5)T(0.5)PQNEEIR ; 167.88 7.53E-14 4069900000 44363 47962 40182 44609 46629 38969 50246 53620 30317.9 58937 TRUE FALSE FALSE 54231.3963 53570.73869 55046.99391 47045.87671 41986.45304 41009.35658 39510.53163 40469.61093 36402.42444 44245.09056 1.225704267 1.210772495 1.244137897 1.063301626 0.94895168 0.926867955 0.892992446 0.914668959 0.822744941 1 15.43322976 -5.556287955 1.903127902 0.906177231 1.230473841 0.91256467 0.042934451 0.084997062 0.622100697 0.013599246 0.020980054 2.78E-06 5.556287955 0.32429661 VLTLSERPLDFLDLERPPT(ph)TPQNEEIR ddPTM_HeLa_A486_30min_R1 4 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 VLTLSERPLDFLDLERPPT(0.5)T(0.5)PQNEEIR;VLTLSERPLDFLDLERPPT(0.761)T(0.239)PQNEEIR;VLTLSERPLDFLDLERPPT(0.5)T(0.5)PQNEEIR;VLTLSERPLDFLDLERPPT(0.5)T(0.5)PQNEEIR ;;; 171.49 1.20E-13 3885510000 439488 506885 454529 201793.4 616531 454250 526992 557839 556946 617419 TRUE FALSE FALSE 408682.1607 466717.5866 630534.8015 469785.2333 539199.9331 398209.2535 395133.0276 430831.2372 605222.5277 462813.2637 0.883038998 1.008436065 1.362395703 1.015064325 1.165048574 0.860410202 0.853763405 0.930896478 1.307703506 1 18.82007069 -6.24676458 24.8091169 0.977686282 1.093769277 0.074131733 0.16608236 1887.425814 3190870.943 0.056594061 0.056360553 5.67E-07 6.24676458 0.116082995 VLTLSERPLDFLDLERPPTT(ph)PQNEEIR ddPTM_HeLa_A485_30min_R1 2 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 VLTLSERPLDFLDLERPPT(0.029)T(0.971)PQNEEIR;VLTLSERPLDFLDLERPPT(0.048)T(0.952)PQNEEIR ; 281.27 1.79E-76 571250000 176749 215772 141568 143747 176623 158531 187056 211990 109918 242386 TRUE FALSE FALSE 216066.2053 241004.6584 193939.8943 151599.5346 159037.794 166831.438 147089.9575 159999.1201 131977.5344 181963.631 1.187414233 1.324466088 1.065816797 0.83313096 0.874008686 0.916839465 0.808348112 0.879291753 0.725296224 1 17.4732906 -5.032461115 3.202130326 0.858496142 1.254031401 0.815982744 0.075196252 0.088587999 1.843215101 0.019795499 0.041567792 9.28E-06 5.032461115 0.395535259 VLTLSERPLDFLDLERPPTT(ph)PQNEEIR ddPTM_HeLa_A486_30min_R1 1 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-2;Q9GZY8;A0A0A0MS29;C9JHF5;Q9GZY8-4;Q9GZY8-3;Q9GZY8-5 Q9GZY8-2;Q9GZY8-5 MFF Mitochondrial fission factor 1 0 VLTLSERPLDFLDLERPPT(0.042)T(0.958)PQNEEIR 174.93 2.50E-14 114940000 34674 31331 33095 13170 47169 39570 34118 38488 45551 41586 TRUE FALSE FALSE 32243.53166 28848.21745 45910.27031 30660.42557 41252.62419 34688.25572 25581.31554 29725.12259 49499.39736 31172.59492 1.034355072 0.925435227 1.472776663 0.983569884 1.323361892 1.112780499 0.820634779 0.95356587 1.587913919 1 14.92799063 -6.660029679 0.002906468 0.513104963 1.720684409 0 0.24091651 1069296.223 1711.569232 353725.01 357358.7683 2.19E-07 6.660029679 1.207579446 VLTPELYAELR ddPTM_HeLa_A485_30min_R1 2 VLTPELYAELR 11 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 0 0 ; ; 154.85 0.00012775 43668000 29513 34169 36990 32443 43236 34098 39546 45197 34628 46152 FALSE FALSE TRUE 36078.06503 38164.76732 50674.14028 34215.27894 38931.27203 35883.31855 31096.67404 34112.36488 41577.52197 34647.15576 1.041299473 1.101526705 1.462577206 0.987534999 1.123649869 1.035678622 0.897524583 0.984564653 1.200026988 1 15.0804493 VLTTS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 VLTTSPSR 8 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 VLT(0.033)T(0.031)S(0.936)PSR;VLT(0.009)T(0.041)S(0.95)PSR;VLT(0.042)T(0.044)S(0.913)PS(0.001)R;VLT(0.235)T(0.177)S(0.586)PS(0.002)R ;;; 112.8 0.0011008 4697830000 5409100 7310100 7115000 5345030 8147100 6828110 7665400 8428200 6262570 7100000 TRUE FALSE FALSE 6612335.634 8164952.606 9747134.58 5637015.455 7335946.118 7185619.281 6027624.669 6361170.735 7519410.355 5330100.666 1.240564869 1.531857111 1.828696152 1.057581424 1.376324122 1.348120745 1.130865071 1.193442889 1.410744529 1 22.34573135 -5.276068933 24.99945906 1.233332888 1.533521182 0.383934754 0.183159996 836.9784966 1430254.155 0.051247661 0.076377373 5.30E-06 5.276068933 0.300188293 VLTTS(ph)PSR ddPTM_HeLa_A486_30min_R1 2 VLTTSPSR 8 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 VLT(0.002)T(0.004)S(0.949)PS(0.045)R;VLT(0.135)T(0.135)S(0.73)PSR ; 121.5 0.00070695 2362450000 1163600 1321800 1304400 450180 1715900 1179100 1348600 1382100 1151766 1233000 TRUE FALSE FALSE 1082037.649 1217055.754 1809498.613 1048041.791 1500675.822 1033634.63 1011166.016 1067426.001 1251602.004 924248.7745 1.170721216 1.316805375 1.95780472 1.133939065 1.623670881 1.118351096 1.094040959 1.154912 1.354183028 1 19.8179217 -6.280785316 24.35577721 1.150838353 1.445409611 0.284275986 0.23488971 811.3301143 1021429.059 0.081823795 0.072278971 5.24E-07 6.280785316 0.294571258 VLVFVMGK ddPTM_HeLa_A486_30min_R1 1 VLVFVMGK 8 0 C9J712;P35080 C9J712 PFN2 Profilin-2 0 0 149.92 0.00053205 13496000 30417 32219 22627 13074 34764 31238 35585 38414 28130 42096 FALSE FALSE TRUE 28284.92537 29665.8491 31388.78037 30436.93272 30403.57496 27384.17316 26681.25662 29667.97077 30568.33105 31554.8876 0.896372243 0.940134837 0.994735927 0.964571103 0.963513968 0.867826674 0.845550678 0.940202074 0.968735222 1 14.94557586 VLVNSAS(ph)AQKR ddPTM_HeLa_A485_30min_R1 1 VLVNSASAQKR 11 1 E3W994;J3KR49;O75122;A0A0U1RQI6;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 VLVNSAS(1)AQKR 104.9 0.0004445 191680000 145010 161450 129240 162950 240120 187630 209410 252200 138810 211170 TRUE FALSE FALSE 177266.9742 180330.1731 177051.2541 171851.5459 216212.8097 197454.0167 164667.8428 190347.5546 166667.8938 158529.2053 1.118197583 1.137520198 1.116836824 1.084037137 1.363867366 1.245537163 1.038722439 1.2007097 1.051338732 1 17.27438912 -7.913106931 4.416047754 1.001151303 1.163179366 0.293859072 0.08676961 0.25667957 8.46132871 0.087729049 0.023022713 1.22E-08 7.913106931 0.162028063 VLVNSAS(ph)AQKR ddPTM_HeLa_A486_30min_R1 2 VLVNSASAQKR 11 1 E3W994;J3KR49;O75122;A0A0U1RQI6;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 VLVNSAS(1)AQKR;VLVNS(0.006)AS(0.994)AQKR ; 102.63 0.00060228 309400000 324130 333290 220087 141811 364810 357730 405320 435030 255080 422310 TRUE FALSE FALSE 301410.1608 306878.8866 305310.5805 330143.1747 319052.1281 313596.9097 303904.649 335983.1656 277190.5398 316560.8272 0.952139794 0.969415228 0.964461027 1.042905964 1.007869896 0.990637131 0.960019759 1.061354207 0.875631209 1 18.27212321 -5.045554731 24.98686457 0.993942406 0.962317522 0.071899959 0.047419009 1040.518 570725.1218 0.012173156 0.021085919 9.00E-06 5.045554731 -0.031624885 VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQS(ph)PATGR ddPTM_HeLa_A485_30min_R1 1 VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQSPATGR 45 3 Q92558 Q92558 WASF1 Wiskott-Aldrich syndrome protein family member 1 1 0 VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQS(0.944)PAT(0.056)GR 245.54 2.53E-53 1947400000 121120 146140 130400 125030 159320 141270 181300 208210 132980 160940 TRUE FALSE FALSE 148062.7261 163229.8018 178640.3864 131860.0723 143457.5414 148666.6788 142563.7739 157146.171 159667.8662 120820.6199 1.225475637 1.351009471 1.478558764 1.091370599 1.187359753 1.230474392 1.179962278 1.300656885 1.321528282 1 16.88250717 -11.00596906 2.795381503 0.727408554 1.262311186 0.375219647 0.101782927 61672815.72 50867361.71 108018659.6 0.026914433 9.86E-12 11.00596906 0.534902632 VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQS(ph)PATGR ddPTM_HeLa_A486_30min_R1 2 VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQSPATGR 45 3 Q92558 Q92558 WASF1 Wiskott-Aldrich syndrome protein family member 1 1 0 VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQS(0.947)PAT(0.053)GR;VLVRPHEPPPPPPMHGAGDAKPIPTCISSATGLIENRPQS(0.964)PAT(0.036)GR ; 305.98 1.90E-96 2934000000 670130 646650 511720 213028 715550 603190 750170 756920 542290 740070 TRUE FALSE FALSE 623157.3476 595407.0989 709871.6883 495939.9498 625799.0468 528774.5506 562469.5315 584585.8394 589296.1338 554751.655 1.123308677 1.073285845 1.279620677 0.893985526 1.128070626 0.953173453 1.013912309 1.053779352 1.062270168 1 19.08148254 -5.262517429 24.99977889 1.019354589 1.150193138 0.422778588 0.076639784 97.4840826 2260648.914 0.020298227 0.03210764 5.46E-06 5.262517429 0.130838549 VLWEEVVHSASAPEPPNTQLQS(ph)EATQHKSPVPQESQER ddPTM_HeLa_A485_30min_R1 1 VLWEEVVHSASAPEPPNTQLQSEATQHKSPVPQESQER 38 1 Q15776 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 1 0 VLWEEVVHSASAPEPPNT(0.001)QLQS(0.38)EAT(0.328)QHKS(0.285)PVPQES(0.006)QER 78.228 0.00038283 90405000 15166 21365 18853 19936 36566 26043 39887 46469 25418 48839 TRUE FALSE FALSE 18539.62438 23863.4509 25827.50924 21025.0532 32925.36065 27406.57121 31364.8166 35072.40489 30519.15945 36664.33612 0.505658259 0.650862757 0.70443139 0.57344699 0.89802146 0.747499454 0.855458463 0.956580934 0.83239362 1 15.1620898 -3.756061623 0.212559622 1.023062722 3.64E-12 0.755969069 0.076966174 7.746936029 0.264555342 0.141432547 2.16926565 0.000175363 3.756061623 -1.023062722 VLYLLSQLQQS(ph)QMAEK ddPTM_HeLa_A485_30min_R1 1 VLYLLSQLQQSQMAEK 16 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 VLYLLSQLQQS(1)QMAEK 156.49 1.82E-08 11398000 10948 10109 7997.8 11911 14156 10824 17390 19023 8444.4 14955 TRUE FALSE FALSE 13383.34483 11291.15961 10956.51904 12561.66777 12746.57894 11390.7279 13674.48444 14357.57942 10139.11362 11226.99373 1.192068434 1.005715322 0.975908538 1.118880804 1.135351034 1.014583973 1.218000541 1.278844522 0.903101389 1 13.45468405 VMALWHQLHVNT(ph)KS(ph)LISWNYLRKDLDLVQTWNLEK ddPTM_HeLa_A486_30min_R1 1 VMALWHQLHVNTKSLISWNYLRKDLDLVQTWNLEK 35 3 H3BQK9;H3BPE1;Q9UPN3;Q9UPN3-2;Q9UPN3-3;Q9UPN3-4;A0A590UJG2;H0Y390;E9PNZ4;A0A669KBB0;A0A5F9ZGX0;E9PLY5 H3BQK9 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 2 0 VMALWHQLHVNT(0.96)KS(0.897)LIS(0.049)WNY(0.057)LRKDLDLVQT(0.036)WNLEK 47.663 0.016641 351810000 89412 196300 51489 234180 238300 392940 591020 529500 156630 387090 TRUE FALSE FALSE 83144.68052 180744.4731 71426.91972 545182.8748 208410.1919 344463.0579 443140.5448 408944.4089 170206.8145 290160.1445 0.286547557 0.622912817 0.246163786 1.878903375 0.718259196 1.187148078 1.527227475 1.409374846 0.586596119 1 18.14648984 -5.234135957 24.97026746 1.198522443 0.408978408 0.499872605 0.367060945 601.9975648 550554.5173 0.096331715 0.166797769 5.83E-06 5.234135957 -0.789544035 VMATTSAS(ph)LKR ddPTM_HeLa_A485_30min_R1 1 VMATTSASLKR 11 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 VMAT(0.016)T(0.014)S(0.384)AS(0.585)LKR 47.621 0.032615 102790000 86515 74146 57295 95837 83276 85854 90460 96489 75522 121370 TRUE FALSE FALSE 105759.9633 82816.72972 78490.80474 101072.3326 74984.74904 90349.18268 71132.48201 72824.92146 90678.57267 91114.69265 1.160734457 0.908928377 0.861450579 1.109286875 0.822970992 0.991598392 0.780691675 0.7992665 0.995213505 1 16.47539609 -5.78068015 24.99972401 0.887039001 0.992255768 0.183269332 0.111645826 435.8052785 566243.5594 0.034242606 0.038885089 1.66E-06 5.78068015 0.105216767 VMATTSAS(ph)LKR ddPTM_HeLa_A486_30min_R1 2 VMATTSASLKR 11 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 VMATTS(0.002)AS(0.998)LKR;VMATTS(0.002)AS(0.997)LKR ; 119.88 0.00010955 379690000 312611 328470 172953 116580 266678 295595 303138 272400 238550 396350 TRUE FALSE FALSE 290698.5832 302440.8409 239925.0334 271404.1316 233228.7586 259127.4943 227289.6661 210380.4665 259227.7061 297101.3802 0.978449117 1.017971848 0.807552739 0.913506802 0.785014053 0.872185427 0.765023932 0.708110027 0.872522726 1 18.18059578 -4.761066599 24.99994141 0.829128111 0.998210531 0.384725322 0.078740903 8.513967325 570772.3458 0.019789331 0.04621386 1.73E-05 4.761066599 0.16908242 VMDS(ph)DEDDDY ddPTM_HeLa_A485_30min_R1 3 VMDSDEDDDY 10 0 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY ;; 183.67 1.28E-09 1268350000 1118510 1267050 1384860 1532050 1820320 1255460 1622710 1586800 1404260 1980350 TRUE FALSE FALSE 1367318.691 1415220.476 1897177.343 1615742.012 1639082.549 1321193.944 1276004.752 1197634.812 1686082.101 1486685.191 0.919709633 0.951930163 1.276112357 1.08680844 1.102508157 0.888684405 0.858288466 0.805573917 1.134121811 1 20.50366775 -6.260823577 24.99968969 0.920241758 1.073669848 0.212530719 0.12271935 80.78181851 3279533.65 0.043158966 0.040720503 5.48E-07 6.260823577 0.15342809 VMDS(ph)DEDDDY ddPTM_HeLa_A486_30min_R1 5 VMDSDEDDDY 10 0 K7EQA1;O14737 K7EQA1 PDCD5 Programmed cell death protein 5 1 0 VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY ;;;; 231.38 1.13E-17 1763680000 1923540 2420460 2130990 817020 3011080 2411450 2506110 2579130 2206280 2205210 TRUE FALSE FALSE 1788709.779 2228653.934 2956166.398 1902063.85 2633402.269 2113949.817 1879054.771 1991918.401 2397522.127 1653011.062 1.082091838 1.348238971 1.788352459 1.150666135 1.593094159 1.278847955 1.13674664 1.205024241 1.450396904 1 20.65666495 -6.510924646 23.441437 1.214080112 1.402326532 0.152578552 0.214931472 505.6037477 991472.8511 0.077175855 0.06444225 3.08E-07 6.510924646 0.188246421 VMDS(ph)PERPVVNANVSVPLMFR ddPTM_HeLa_A485_30min_R1 2 VMDSPERPVVNANVSVPLMFR 21 1 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 VMDS(1)PERPVVNANVSVPLMFR;VMDS(1)PERPVVNANVSVPLMFR ; 148.26 7.73E-10 219277000 69717 80244 79571 81420 91504 82710 82863 104399 75138 103037 TRUE FALSE FALSE 85225.30613 89627.83777 109007.6241 85867.76843 82393.54047 87040.56771 65158.64312 78794.98156 90217.50739 77351.77216 1.10178867 1.158704387 1.409245336 1.110094391 1.065179739 1.125256284 0.842367813 1.018657742 1.166327608 1 16.23914672 -5.507067068 11.93104618 1.037004239 1.223949718 0.371571535 0.108816822 0.934531353 700.6247915 0.032330991 0.045682121 3.11E-06 5.507067068 0.186945479 VMDS(ph)PERPVVNANVSVPLMFR ddPTM_HeLa_A486_30min_R1 2 VMDSPERPVVNANVSVPLMFR 21 1 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 VMDS(1)PERPVVNANVSVPLMFR;VMDS(1)PERPVVNANVSVPLMFR ; 172.52 3.29E-14 499360000 94551 105699 90674 48355 130965 94667 121239 125363 92875 101527 TRUE FALSE FALSE 87923.46316 97323.02629 125785.4011 112572.8837 114538.1485 82987.94804 90903.71986 96820.58156 100925.4798 76103.97837 1.155307055 1.27881654 1.652809798 1.479198409 1.505021826 1.090454794 1.194467383 1.272214457 1.326152482 1 16.21568425 -6.257950105 24.97653128 1.194784323 1.423571426 0.379533079 0.150757168 370.2395235 2650210.886 0.053923016 0.051845177 5.52E-07 6.257950105 0.228787102 VMEHFIK ddPTM_HeLa_A485_30min_R1 3 VMEHFIK 7 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ;; ;; 100.07 0.015771 215929000 312824 360666 303274 312983 415229 400866 445381 521428 325418 476769 FALSE FALSE TRUE 382410.6196 402842.7513 415467.6729 330080.4688 373887.3428 421854.7239 350221.7109 393546.9654 390726.4077 357919.2626 1.068427044 1.125512912 1.16078601 0.922220465 1.044613637 1.17863096 0.978493609 1.099541172 1.091660742 1 18.44927466 -8.912701558 0.007937086 1.29E-06 2.089863198 0.063888641 0.075028579 16758.76218 42.55346345 5753.368218 5449.553674 1.22E-09 8.912701558 2.089861903 VMEKPS(ph)PLLVGR ddPTM_HeLa_A485_30min_R1 1 VMEKPSPLLVGR 12 1 Q9UN86-2;Q9UN86;D6RB17;D6RBW8;E5RJU8;D6RAC7;D6RGJ4;E5RH42;D6R9X5;E5RH00;D6RE13;E5RI46;D6RBR0;D6REX8;D6RBM9;D6R9A4;Q13283-2;E5RIF8;Q13283;E5RIZ6 Q9UN86-2;Q13283 G3BP2;G3BP1 Ras GTPase-activating protein-binding protein 2;Ras GTPase-activating protein-binding protein 1 1 0 VMEKPS(1)PLLVGR 99.069 0.00057446 543780000 704630 806220 595410 817950 990680 944120 1193800 1200900 737210 1049700 TRUE FALSE FALSE 861372.5126 900500.4158 815676.9361 862632.5373 892044.4207 993552.6633 938734.8776 906377.3921 885161.2849 788029.1083 1.093071948 1.142724814 1.03508478 1.094670905 1.131994252 1.26080706 1.191243912 1.15018263 1.12325963 1 19.5878894 -5.893193037 4.506711113 1.160975214 1.091416868 0.103299038 0.066561679 0.367026058 12.89735552 0.020798848 0.023814719 1.28E-06 5.893193037 -0.069558346 VMEKPS(ph)PLLVGR ddPTM_HeLa_A486_30min_R1 1 VMEKPSPLLVGR 12 1 Q9UN86-2;Q9UN86;D6RB17;D6RBW8;E5RJU8;D6RAC7;D6RGJ4;E5RH42;D6R9X5;E5RH00;D6RE13;E5RI46;D6RBR0;D6REX8;D6RBM9;D6R9A4;Q13283-2;E5RIF8;Q13283;E5RIZ6 Q9UN86-2;Q13283 G3BP2;G3BP1 Ras GTPase-activating protein-binding protein 2;Ras GTPase-activating protein-binding protein 1 1 0 VMEKPS(1)PLLVGR 96.247 0.00072501 720990000 524950 594320 379070 227960 619890 639530 668350 692540 471890 699110 TRUE FALSE FALSE 488153.7158 547223.9187 525856.0558 530702.4005 542137.616 560631.2909 501121.7609 534863.76 512793.8051 524048.3056 0.931505189 1.044224193 1.003449587 1.012697484 1.034518403 1.069808422 0.956251085 1.020638278 0.978523926 1 18.99934028 -4.247857358 24.2033924 1.014303043 0.931505102 0.39039433 0.030659496 1520.984227 2710348.713 0.007539341 0.137816693 5.65E-05 4.247857358 -0.08279794 VMIGS(ph)PK ddPTM_HeLa_A485_30min_R1 3 VMIGSPK 7 0 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 VMIGS(1)PK;VMIGS(1)PK;VMIGS(1)PK ;; 101.65 0.0041793 5702370000 3045560 2832570 1991820 5018350 3968240 2917150 4784510 4992110 2498100 6132340 TRUE FALSE FALSE 3723034.315 3163814.421 2728677.105 5292489.753 3573148.092 3069887.463 3762260.353 3767787.195 2999445.756 4603660.495 0.808711746 0.687238867 0.592719013 1.149626424 0.776153692 0.666836198 0.817232365 0.818432897 0.65153496 1 22.13435001 -11.1039725 2.443127381 1.400583336 0.77687347 0.176901141 0.145972655 33153361.92 9412414.819 73808778.36 0.038938833 7.87E-12 11.1039725 -0.623709866 VMIGS(ph)PK ddPTM_HeLa_A486_30min_R1 5 VMIGSPK 7 0 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 VMIGS(1)PK;VMIGS(1)PK;VMIGS(1)PK;VMIGS(1)PK;VMIGS(1)PK ;;;; 94.692 0.0057569 7258206000 6926580 7079620 3792073 4753045 6713670 7957350 10955990 9664960 5078000 11714110 TRUE FALSE FALSE 6441062.511 6518605.128 5260465.221 11065328.97 5871578.906 6975653.061 8214685.421 7464459.593 5518165.129 8780820.61 0.733537649 0.742368557 0.599085832 1.260170257 0.668682253 0.794419266 0.935525936 0.850086788 0.628433876 1 23.06592434 VMIYQDEVKLPAKLS(ph)ISK ddPTM_HeLa_A486_30min_R1 2 VMIYQDEVKLPAKLSISK 18 2 Q6NZI2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 VMIYQDEVKLPAKLS(0.999)IS(0.001)K;VMIYQDEVKLPAKLS(0.965)IS(0.035)K ; 203.4 1.26E-25 955480000 956190 660389 231661 545421 614869 878035 1385930 1313950 457370 1516100 TRUE FALSE FALSE 889166.0188 608057.3705 321366.3433 1269767.652 537746.3966 769711.9689 1039155.655 1014792.268 497015.1999 1136458.692 0.78240065 0.53504573 0.282778728 1.117302073 0.473177248 0.677289878 0.91438049 0.892942503 0.437336793 1 20.11611382 -5.246531897 24.99373714 0.770628233 0.533572156 0.197870922 0.232703074 1424.880074 2388936.603 0.061868661 0.106597526 5.67E-06 5.246531897 -0.237056077 VMLGETNPADSKPGTIR ddPTM_HeLa_A485_30min_R1 2 VMLGETNPADSKPGTIR 17 1 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;O60361 Q32Q12 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A;Putative nucleoside diphosphate kinase 0 0 ; ; 211.45 4.30E-20 595446000 286412 326363 293378 305843 379800 398238 467670 494560 335726 435610 FALSE FALSE TRUE 350123.3613 364528.3139 401910.7307 322550.4287 341985.7784 419089.1259 367748.484 373268.3846 403103.1287 327020.4438 1.070646707 1.114695796 1.229007967 0.986331083 1.045762688 1.281538001 1.124542795 1.14142217 1.232654216 1 18.3190213 VMLGETNPADSKPGTIR ddPTM_HeLa_A486_30min_R1 3 VMLGETNPADSKPGTIR 17 1 Q32Q12;P22392-2;P22392;J3KPD9;E7ERL0;P15531;P15531-2;O60361 Q32Q12 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A;Putative nucleoside diphosphate kinase 0 0 ;; ;; 179.74 3.02E-12 20801000 408353 444417 320636 228477.4 629752 406330 498803 520683 424154 574806 FALSE FALSE TRUE 379729.5634 409199.7784 444794.8461 531906.9338 550762.632 356201.1359 373997.2136 402134.8473 460920.0102 430870.8362 0.881307184 0.94970405 1.032315972 1.234492774 1.278254608 0.8267005 0.868003082 0.933307185 1.069740561 1 18.71689593 -6.290954981 24.9984912 0.930910283 1.074707681 0.221223061 0.126751477 1204.83905 1020444.851 0.049724983 0.043858607 5.12E-07 6.290954981 0.143797398 VMPTKS(ph)PPPPGGGNLGMNSR ddPTM_HeLa_A485_30min_R1 2 VMPTKSPPPPGGGNLGMNSR 20 1 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 VMPT(0.024)KS(0.976)PPPPGGGNLGMNSR;VMPT(0.014)KS(0.986)PPPPGGGNLGMNSR ; 106.12 1.76E-05 2219050000 621850 688730 557800 724460 881030 716180 1022140 1015770 480830 784720 TRUE FALSE FALSE 760178.3871 769270.9823 764153.432 764035.4154 793311.5597 753678.0774 803751.4389 766650.8148 577328.1706 589103.7457 1.290398156 1.305832781 1.29714577 1.296945438 1.346641513 1.27936392 1.364363144 1.301385062 0.980011033 1 19.1681622 -7.756011423 9.986809897 0.98950182 1.31132766 0.963293468 0.025005723 0.017750521 25.14619036 0.018273091 0.006103377 1.75E-08 7.756011423 0.321825841 VMPTKS(ph)PPPPGGGNLGMNSR ddPTM_HeLa_A486_30min_R1 1 VMPTKSPPPPGGGNLGMNSR 20 1 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 VMPT(0.021)KS(0.979)PPPPGGGNLGMNSR 128.17 2.68E-07 1043200000 576320 500420 340580 210500 585540 562550 671780 665630 425120 701570 TRUE FALSE FALSE 535922.9441 460764.8967 472461.697 490054.6381 512096.1133 493148.3006 503693.5386 514080.5796 461969.7439 525892.3055 1.01907356 0.876158278 0.898400095 0.9318536 0.973766126 0.937736292 0.957788379 0.977539649 0.878449331 1 19.00440786 -5.541150781 22.74068516 0.952478356 0.923942315 0.04862705 0.045881411 226.8804325 282362.7728 0.013063453 0.016870467 2.88E-06 5.541150781 -0.028536041 VMQENSS(ph)SFSDLSER ddPTM_HeLa_A486_30min_R1 1 VMQENSSSFSDLSER 15 0 Q86TC9;Q86TC9-3 Q86TC9 MYPN Myopalladin 1 0 VMQENS(0.074)S(0.462)S(0.462)FS(0.002)DLSER 109.35 8.26E-05 0 37468 44226 39047 9980.7 55022 38775 56538 41862 39872 41572 TRUE FALSE FALSE 34841.68668 40721.37069 54167.04411 23235.574 48120.6277 33991.33474 42391.5944 32330.93644 43328.13706 31162.10061 1.118078884 1.30675949 1.738234684 0.745635677 1.544203592 1.090790867 1.360357408 1.037508249 1.390411308 1 14.92750487 -13.73507339 0.192615713 6.27E-11 1.305799723 0.074839264 0.265514637 329.7000288 3.549540133 127.0210659 0.667023047 1.84E-14 13.73507339 1.305799723 VMQEQGTHPK ddPTM_HeLa_A485_30min_R1 3 VMQEQGTHPK 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;; ;; 104.82 0.0029292 47270000 74604 82442 84619 86871 118326 95066 114203 123360 95597 127622 FALSE FALSE TRUE 91199.40242 92082.87475 115923.0894 91616.54276 106545.048 100043.5088 89802.5961 93105.76658 114782.441 95808.18411 0.951895741 0.961117003 1.20994976 0.956249653 1.112066249 1.044206293 0.937316545 0.971793458 1.198044218 1 16.54786128 -4.567089175 24.99973844 1.049385934 0.954197845 0.155417136 0.090296432 212.4279594 120121.148 0.022444254 0.059381985 2.71E-05 4.567089175 -0.095188089 VMQLFGLVNTLLANDPTSLRK ddPTM_HeLa_A485_30min_R1 1 VMQLFGLVNTLLANDPTSLRK 21 1 P42345;B1AKP8 P42345 MTOR Serine/threonine-protein kinase mTOR 0 0 76.027 0.0019436 10964000 8477.1 9964.1 7934 8222.1 11996 10055 13241 15144 6232.3 12311 FALSE FALSE TRUE 10362.80165 11129.31482 10869.11676 8671.252504 10801.63612 10581.46425 10411.95218 11429.91026 7483.065444 9242.094267 1.121261194 1.204198366 1.176044785 0.938234588 1.16874334 1.144920615 1.12657931 1.236722968 0.809672054 1 13.17400409 -7.762127638 24.99999544 0.904836005 1.136961219 0.540101213 0.086621725 13.7617868 499703.8536 0.068317341 0.021645028 1.73E-08 7.762127638 0.232125214 VMREVRAR ddPTM_HeLa_A486_30min_R1 1 VMREVRAR 8 2 H7C5V1 H7C5V1 THUMPD2 0 0 50.966 0.036628 300470000 522490 427770 373000 130320 460140 207660 259000 147630 112870 114230 FALSE FALSE TRUE 485866.1491 393871.9473 517435.5893 303391.546 402424.9506 182041.0205 194195.4606 114017.8717 122653.6625 85626.06449 5.674278645 4.599907162 6.042968253 3.543214882 4.69979501 2.126000087 2.267947987 1.331579028 1.432433725 1 16.3857624 -6.262115015 0.805746599 1.107686888 5.434019999 0.877262587 0.626287758 0.192921966 0.272262296 0.390995086 0.373040979 5.47E-07 6.262115015 4.326333111 up VMS(ph)PENFPTASVEGK ddPTM_HeLa_A485_30min_R1 2 VMSPENFPTASVEGK 15 0 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1;H3BRU9;H3BSP3 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 1 0 VMS(1)PENFPTASVEGK;VMS(1)PENFPTASVEGK ; 269.87 1.43E-54 0 139223 108177 96712 161769 180991 151408 207655 190359 148679 200586 TRUE FALSE FALSE 170192.676 120827.3591 132489.7933 170606.0308 162970.9005 159335.4888 163287.8129 143673.1568 178517.5115 150583.6017 1.130220516 0.802393871 0.879842106 1.132965535 1.082261937 1.058119788 1.084366498 0.954108915 1.185504328 1 17.20020515 -5.256824819 24.9761604 1.069618256 0.923976332 0.278890827 0.097676995 454.8817664 2462023.666 0.025688204 0.04265051 5.54E-06 5.256824819 -0.145641925 VMS(ph)PENFPTASVEGK ddPTM_HeLa_A486_30min_R1 2 VMSPENFPTASVEGK 15 0 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1;H3BRU9;H3BSP3 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 1 0 VMS(1)PENFPTASVEGK;VMS(1)PENFPTASVEGK ; 214.28 3.12E-23 112450000 178702 192753 102191 63666 190310 190122 219671 195898 152386 221450 TRUE FALSE FALSE 166175.9126 177478.5503 141762.092 148217.6655 166439.5452 166666.6807 164706.9924 151296.3018 165594.9412 165997.4786 1.00107492 1.069164133 0.854001477 0.892891065 1.002663092 1.004031399 0.992225868 0.911437349 0.997575039 1 17.3408018 VMS(ph)SPSAMK ddPTM_HeLa_A486_30min_R1 1 VMSSPSAMK 9 0 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 VMS(0.558)S(0.436)PS(0.006)AMK 56.548 0.0099017 0 383100 418260 271840 164980 425190 427190 498250 457170 326400 533370 TRUE FALSE FALSE 356246.6683 385115.5543 377103.7281 384081.7776 371858.7055 374487.6411 373582.58 353082.371 354692.6148 399810.6803 0.891038399 0.963244789 0.943205739 0.960659123 0.930086973 0.936662424 0.9343987 0.883123909 0.887151425 1 18.60895749 -7.027024571 23.84202671 0.912834853 0.939289593 0.003281883 0.035504583 959.2292766 846260.8594 0.015751339 0.00913364 9.40E-08 7.027024571 0.02645474 VMSS(ph)PSAMK ddPTM_HeLa_A486_30min_R1 3 VMSSPSAMK 9 0 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 0 VMS(0.024)S(0.974)PS(0.002)AMK;VMS(0.06)S(0.879)PS(0.061)AMK;VMS(0.023)S(0.975)PS(0.002)AMK ;; 140.49 0.0001329 561750000 2331370 2393420 1439290 859730 2398310 2312020 2713420 2632740 1881000 2786320 TRUE FALSE FALSE 2167953.002 2203756.683 1996621.634 2001494.888 2097491.596 2026786.479 2034493.616 2033322.574 2044046.595 2088607.336 1.037989748 1.055132118 0.955958355 0.958291611 1.004253677 0.970400919 0.974091004 0.973530323 0.978664854 1 20.99410986 -4.755779864 24.99999577 0.975933562 1.04656096 0.772406822 0.015118349 57.29057132 253064.3899 0.003829632 0.009564717 1.75E-05 4.755779864 0.070627399 VMTAEVLGQHLASLQK ddPTM_HeLa_A485_30min_R1 1 VMTAEVLGQHLASLQK 16 0 H7C4B8 H7C4B8 FAM228A 0 0 55.841 0.028056 52563000 145660 64071 38474 316080 78697 116280 157830 126530 78111 313140 FALSE FALSE TRUE 178061.5645 71563.54611 52707.13364 333346.65 70861.65036 122368.241 124108.3311 95498.31911 93787.16122 235079.9609 0.757451055 0.304422146 0.224209386 1.418013891 0.301436371 0.520538801 0.527940921 0.4062376 0.398958554 1 17.84279204 -11.1273988 2.354116483 1.922570109 0.53765957 0.151266594 0.326906936 51206263.97 13619503.72 252369659.1 0.080275986 7.46E-12 11.1273988 -1.384910539 VMTAEVLGQHLASLQK ddPTM_HeLa_A486_30min_R1 1 VMTAEVLGQHLASLQK 16 0 H7C4B8 H7C4B8 FAM228A 0 0 55.841 0.028056 82110000 217410 241780 86759 156850 160620 359100 381320 372710 170100 642050 FALSE FALSE TRUE 202170.6817 222620.4723 120354.4083 365154.7268 140473.5419 314797.8931 285909.7028 287852.0692 184844.405 481276.501 0.420071791 0.462562522 0.250073311 0.758721288 0.291877001 0.654089473 0.59406537 0.598101234 0.38407112 1 18.87650646 -14 0.200067108 3.252028742 0.416091905 0.500460116 0.153071824 114.5025921 1.132896731 103.3055477 0.352542425 1.00E-14 14 -2.835936837 VMTIPYQPMPAS(ph)SPVICAGGQDR ddPTM_HeLa_A485_30min_R1 1 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 VMTIPYQPMPAS(0.897)S(0.103)PVICAGGQDR 139.26 3.67E-07 622090000 136460 206000 207150 156940 231120 187920 228680 225550 190110 209140 TRUE FALSE FALSE 166815.0562 230089.908 283783.4052 165513.2348 208108.8813 197759.2006 179820.6499 170233.5089 228263.3332 157005.2469 1.062480774 1.465491839 1.807477207 1.054189195 1.325489978 1.259570648 1.145316181 1.08425363 1.453857993 1 17.26045325 -5.30747128 24.99994649 1.199277656 1.447185803 0.237774989 0.209624384 608.9155446 330700.9589 0.05864388 0.08698325 4.93E-06 5.30747128 0.247908147 VMTIPYQPMPASS(ph)PVICAGGQDR ddPTM_HeLa_A485_30min_R1 4 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 VMTIPYQPMPAS(0.105)S(0.895)PVICAGGQDR;VMTIPYQPMPAS(0.114)S(0.886)PVICAGGQDR;VMTIPYQPMPAS(0.137)S(0.863)PVICAGGQDR;VMTIPYQPMPAS(0.174)S(0.826)PVICAGGQDR ;;; 203.73 5.69E-29 1480250000 919642 1208570 1262130 957140 1504510 1193680 1296420 1392570 1056700 1289050 TRUE FALSE FALSE 1124213.19 1349901.748 1729044.409 1009426.135 1354715.702 1256179.239 1019429.276 1051040.024 1268769.997 967713.5582 1.161721029 1.394939377 1.786731615 1.04310426 1.399913942 1.298089944 1.053441142 1.08610654 1.311100776 1 19.88422055 -6.383494082 1.178728597 1.116522321 1.390794685 0.23768695 0.198346858 0.707540935 2.017850514 0.109118198 0.088030734 4.14E-07 6.383494082 0.274272364 VMTIPYQPMPASS(ph)PVICAGGQDR ddPTM_HeLa_A486_30min_R1 5 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 VMTIPYQPMPAS(0.327)S(0.673)PVICAGGQDR;VMTIPYQPMPAS(0.213)S(0.787)PVICAGGQDR;VMTIPYQPMPAS(0.042)S(0.958)PVICAGGQDR;VMTIPYQPMPAS(0.123)S(0.877)PVICAGGQDR;VMTIPYQPMPAS(0.21)S(0.79)PVICAGGQDR ;;;; 202.03 6.52E-29 1643562000 1503408 1726620 1471812 492367 1958964 1463130 1596944 1662575 1332702 1627657 TRUE FALSE FALSE 1398026.863 1589796.343 2041737.023 1146255.259 1713252.469 1282623.897 1197371.72 1284042.966 1448221.682 1220081.093 1.145847494 1.303025145 1.673443704 0.939491043 1.404211965 1.051261186 0.981386997 1.05242428 1.186988054 1 20.21854561 -6.111153845 1.353856494 1.05042701 1.320361283 0.260960182 0.1868216 0.582269215 2.179640625 0.082224083 0.084208976 7.74E-07 6.111153845 0.269934273 VMTVSFHK ddPTM_HeLa_A485_30min_R1 1 VMTVSFHK 8 0 Q92769-3;Q92769;Q5TEE2;E7ESJ6;Q13547;O15379;O15379-2 Q92769-3;Q13547;O15379 HDAC2;HDAC1;HDAC3 Histone deacetylase 2;Histone deacetylase 1;Histone deacetylase 3 0 0 86.011 0.016198 12300000 7800.5 14134 15936 4445.6 18687 12305 12542 14190 15086 13157 FALSE FALSE TRUE 9535.694314 15786.84835 21831.38955 4688.451871 16826.45667 12949.27077 9862.299241 10709.88025 18113.62182 9877.202037 0.965424649 1.598311778 2.210280753 0.474674088 1.703565099 1.311026212 0.998491193 1.084303046 1.833881878 1 13.26988671 -5.248860186 24.98908671 1.221467054 1.592036196 0.133129371 0.454497412 1688.116297 3353506.741 0.121137211 0.207993374 5.64E-06 5.248860186 0.370569142 VMVLDFVT(ph)PTPLGTR ddPTM_HeLa_A485_30min_R1 1 VMVLDFVTPTPLGTR 15 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;A0A0B4J225;E9PIZ5;E9PLT3;E9PKI4;E9PQI3 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 1 0 VMVLDFVT(0.986)PT(0.013)PLGTR 87.498 0.0065759 21058000 26510 36115 26310 35252 38089 34449 43135 49839 34351 46449 TRUE FALSE FALSE 32407.05804 40338.33509 36043.16385 37177.7275 34296.72542 36252.69637 33918.85487 37615.90711 41244.93061 34870.11913 0.929364707 1.15681667 1.033640399 1.066177244 0.983556302 1.039649341 0.972719787 1.078743292 1.182815879 1 15.08970367 -7.512205214 24.78300071 1.104531816 1.031324153 0.128883256 0.07085552 802.747932 1863935.238 0.040364383 0.01736157 3.07E-08 7.512205214 -0.073207663 VMVLDFVTPTPLGTR ddPTM_HeLa_A485_30min_R1 3 VMVLDFVTPTPLGTR 15 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;A0A0B4J225;E9PIZ5;E9PLT3;E9PKI4;E9PQI3 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;; ;; 221.59 3.76E-22 54618000 74234 92551 95481 73102 123681 84606 97452 112576 83177 104275 FALSE FALSE TRUE 90747.0972 103374.0344 130803.3952 77095.37716 111366.8854 89035.83933 76630.58409 84966.55949 99869.86096 78281.16154 1.159245665 1.320548039 1.670943464 0.984852238 1.422652439 1.137385261 0.978914755 1.085402386 1.275784097 1 16.25637754 -6.419973473 6.00054547 1.087616528 1.313050427 0.266641342 0.180729379 0.332132712 16.24277277 0.063999901 0.056037166 3.80E-07 6.419973473 0.225433899 VMVLDFVTPTPLGTR ddPTM_HeLa_A486_30min_R1 2 VMVLDFVTPTPLGTR 15 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;E9PKD3;A0A0B4J225;E9PIZ5;E9PLT3;E9PKI4;E9PQI3 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 172.56 2.96E-08 46778000 32799 43494 40386 17013.3 55470 41390 44545 49064 36908 40916 FALSE FALSE TRUE 30499.95947 40047.37704 56024.54077 39607.8222 48512.43536 36283.72262 33399.36985 37893.19826 40107.21516 30670.36728 0.994443894 1.305735164 1.826666771 1.291403583 1.581736368 1.18302211 1.088978477 1.235498679 1.307686171 1 14.90455782 -6.357526009 9.14679256 1.172197893 1.412264257 0.232398945 0.214471132 0.610219882 53.92498711 0.077460603 0.068259182 4.39E-07 6.357526009 0.240066364 VMVQPINLIFR ddPTM_HeLa_A485_30min_R1 2 VMVQPINLIFR 11 0 P62304 P62304 SNRPE Small nuclear ribonucleoprotein E 0 0 ; ; 111.74 0.001989 27303000 31183 38641 45196 34754 53339 37464 49278 47374 42303 50605 FALSE FALSE TRUE 38119.55077 43159.72882 61915.88116 36652.52302 48028.38188 39425.55711 38749.35274 35755.45222 50792.82407 37990.10482 1.00340736 1.136078172 1.62978969 0.964791311 1.264233992 1.0377849 1.019985413 0.941178036 1.33700142 1 15.21333607 -6.270016752 24.29385654 1.06056329 1.206975597 0.101587391 0.195876033 1010.215031 2861241.219 0.068227567 0.061158986 5.37E-07 6.270016752 0.146412307 VMVQPINLIFR ddPTM_HeLa_A486_30min_R1 4 VMVQPINLIFR 11 0 P62304 P62304 SNRPE Small nuclear ribonucleoprotein E 0 0 ;;; ;;; 199.29 1.00E-13 91231000 99686 118127 102436 42736 139464 108252 125011 125610 110378 125659 FALSE FALSE TRUE 92698.52618 108766.1863 142101.9625 99491.56776 121971.1247 94896.96887 93731.92557 97011.34505 119945.6539 94193.1685 0.984132158 1.154714169 1.50862281 1.056250356 1.294904149 1.007471883 0.995103223 1.029919118 1.273400777 1 16.52333481 -6.270409623 24.84968463 1.058919207 1.206414349 0.171371707 0.151929604 1100.127289 3047601.578 0.053643315 0.047988899 5.37E-07 6.270409623 0.147495142 VNAEACVKT(ph)RY(ph)T(ph)VT(ph)DLQAGEEY(ph)K ddPTM_HeLa_A485_30min_R1 2 VNAEACVKTRYTVTDLQAGEEYK 23 2 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 5 0 VNAEACVKT(1)RY(1)T(1)VT(1)DLQAGEEY(1)K;VNAEACVKT(1)RY(1)T(1)VT(1)DLQAGEEY(1)K ; 43.936 0.020609 1673544000 267035 214404 363966 183798 421629 257304.5 232454 222497 440734 274141.1 TRUE FALSE FALSE 326436.0145 239476.6827 498612.1693 193838.4193 379650.1363 270776.5658 182788.3039 167929.2619 529185.2711 205802.769 1.586159487 1.163622258 2.422767059 0.941864973 1.844728029 1.315709051 0.888172228 0.815971829 2.571322406 1 17.65090287 -6.486482043 22.15243884 1.274732491 1.57830613 0.048804561 0.589719438 488.1657133 297116.0739 0.201968248 0.178003499 3.26E-07 6.486482043 0.303573639 VNAEACVKT(ph)RY(ph)T(ph)VT(ph)DLQAGEEY(ph)K ddPTM_HeLa_A486_30min_R1 2 VNAEACVKTRYTVTDLQAGEEYK 23 2 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 5 0 VNAEACVKT(1)RY(1)T(1)VT(1)DLQAGEEY(1)K;VNAEACVKT(1)RY(1)T(1)VT(1)DLQAGEEY(1)K ; 40.094 0.025631 346426000 24442.5 58218 61128 4888.5 69008 49527 42394 44120 53869 15975.1 TRUE FALSE FALSE 22729.20697 53604.59365 84798.39866 11380.67505 60352.37317 43416.86229 31786.5728 34074.83913 58538.40829 11974.83098 1.898081652 4.476438435 7.081385851 0.950382938 5.039935283 3.625676418 2.654448556 2.845538212 4.888453824 1 13.54771767 -10.19113378 0.488734444 4.57E-28 3.808080537 0.183981158 1.678497541 43.70477569 5.832936207 65.84471617 0.82569327 6.44E-11 10.19113378 3.808080537 VNASASS(ph)LK ddPTM_HeLa_A485_30min_R1 1 VNASASSLK 9 0 Q16658 Q16658 FSCN1 Fascin 1 0 VNAS(0.053)AS(0.081)S(0.866)LK 84.188 0.005393 44013000 132320 127200 89327 210810 162760 134690 213570 193840 110060 254400 TRUE FALSE FALSE 161754.1275 142074.9335 122372.7745 222326.0165 146555.0429 141742.1601 167939.0248 146300.4361 132148.0325 190982.7619 0.846956688 0.743914959 0.640752984 1.164115621 0.767373147 0.742172533 0.879341272 0.766040006 0.691936964 1 17.5430829 -11.02018186 2.276332284 1.214728492 0.8068095 0.155143292 0.136624242 32574549.58 11500658.09 36549034.23 0.034097329 9.55E-12 11.02018186 -0.407918992 VNASASS(ph)LK ddPTM_HeLa_A486_30min_R1 3 VNASASSLK 9 0 Q16658 Q16658 FSCN1 Fascin 1 0 VNAS(0.001)AS(0.079)S(0.92)LK;VNAS(0.02)AS(0.334)S(0.645)LK;VNAS(0.114)AS(0.216)S(0.67)LK ;; 122.18 0.00035817 759539000 2038100 2262810 1222490 1215140 1997160 2569770 3029080 2936270 1820400 3746140 TRUE FALSE FALSE 1895239.715 2083496.695 1695870.867 2828907.33 1746657.57 2252737.905 2271172.146 2267745.419 1978193.738 2808082.161 0.67492317 0.741964293 0.603924946 1.007416154 0.622010849 0.802233616 0.808798324 0.807578016 0.704464337 1 21.42115372 -14 0.17875718 1.962557778 0.706478321 0.31866433 0.109595179 161.8670942 1.55416698 55.57714755 0.335272422 1.00E-14 14 -1.256079457 VNASASS(ph)LKK ddPTM_HeLa_A485_30min_R1 2 VNASASSLKK 10 1 Q16658 Q16658 FSCN1 Fascin 1 0 VNASAS(0.147)S(0.853)LKK;VNASAS(0.222)S(0.778)LKK ; 127.02 0.0001525 139180000 788210 462100 343590 1156640 788330 775540 1201320 1057730 560260 1542510 TRUE FALSE FALSE 963544.5952 516138.5753 470698.239 1219824.314 709841.0972 816146.0752 944648.1681 798320.059 672699.043 1157990.645 0.832083229 0.445719124 0.406478447 1.053397383 0.61299381 0.704795051 0.815764939 0.68940113 0.580919238 1 20.14319217 -14 0.255346113 2.95185975 0.655139983 0.20673887 0.181752567 312.9606555 3.09296866 320.5645833 0.256587105 1.00E-14 14 -2.296719767 VNASASS(ph)LKK ddPTM_HeLa_A486_30min_R1 2 VNASASSLKK 10 1 Q16658 Q16658 FSCN1 Fascin 1 0 VNASAS(0.095)S(0.905)LKK;VNASAS(0.125)S(0.875)LKK ; 119.01 0.00018606 1342830000 1269140 1267030 525560 789880 1112610 1658490 2123330 1867560 991910 2395600 TRUE FALSE FALSE 1180179.84 1166625.928 729070.907 1838880.558 973056.0791 1453882.366 1592050.376 1442357.357 1077889.557 1795726.167 0.657215928 0.649668056 0.406003388 1.024031721 0.541873308 0.809634783 0.886577478 0.803216761 0.600252743 1 20.77613594 -5.251801393 24.97661135 0.793252617 0.578833037 0.322486449 0.157019996 872.1367001 2260116.706 0.041226183 0.070256691 5.60E-06 5.251801393 -0.21441958 VNDAEPGS(ph)PEAPQGK ddPTM_HeLa_A485_30min_R1 6 VNDAEPGSPEAPQGK 15 0 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK ;;;;; 292.81 3.80E-67 6233650000 5495670 4476690 3843200 7702260 6642640 5495640 8068350 7445090 5126680 10357520 TRUE FALSE FALSE 6718162.832 5000199.953 5264959.609 8123014.961 5981275.438 5783383.213 6344481.11 5619170.004 6155557.651 7775580.88 0.864007839 0.64306449 0.677114635 1.044682717 0.769238405 0.743787931 0.815949472 0.722668839 0.79165245 1 22.89051903 -10.34804247 2.650192957 1.004052389 0.78332372 0.268513877 0.105993287 5400777.684 5934700.72 169759.6462 0.027785467 4.49E-11 10.34804247 -0.220728669 VNDAEPGS(ph)PEAPQGK ddPTM_HeLa_A486_30min_R1 6 VNDAEPGSPEAPQGK 15 0 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK ;;;;; 351.6 4.07E-104 6281750000 6963850 7645650 4024500 3011090 6899930 8143690 9577640 8912400 6342590 9165480 TRUE FALSE FALSE 6475720.076 7039780.849 5582894.18 7009969.692 6034476.44 7139004.327 7181213.17 6883241.076 6892370.808 6870384.151 0.942555749 1.024656074 0.812602914 1.020316992 0.878331736 1.039098276 1.045241869 1.001871355 1.003200208 1 22.71195934 -6.280899027 24.64411808 1.019709276 0.938498128 0.320957675 0.059674643 841.2416165 1065363.061 0.020049799 0.017709959 5.24E-07 6.280899027 -0.081211149 VNDS(ph)WKER ddPTM_HeLa_A486_30min_R1 2 VNDSWKER 8 1 P49454 P49454 CENPF Centromere protein F 1 0 VNDS(1)WKER;VNDS(1)WKER ; 67.456 0.0090954 241753000 1467900 794240 195771 143325 634810 1527090 1965260 1805130 637650 1506950 TRUE FALSE FALSE 1365007.79 731301.5298 271578.7741 333667.8432 555186.2104 1338693.162 1473531.162 1394141.305 692922.0154 1129599.911 1.208399343 0.647398714 0.240420322 0.295385862 0.491489248 1.185103813 1.30447174 1.234190345 0.613422512 1 20.10738045 -6.259307709 24.78687873 1.09688922 0.546249168 0.391805174 0.303477834 174.6204011 2030477.739 0.108842843 0.103817793 5.50E-07 6.259307709 -0.550640052 VNEEKDGPIS(ph)PK ddPTM_HeLa_A485_30min_R1 1 VNEEKDGPISPK 12 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 VNEEKDGPIS(1)PK 91.812 0.0051226 0 44567 22909 19059 112690 48837 40257 79565 62168 30825 170120 TRUE FALSE FALSE 54480.7754 25588.00827 26109.71721 118845.9694 43974.6168 42364.79427 62565.28776 46921.20052 37011.29476 127712.2148 0.42659017 0.200356781 0.204441817 0.930576371 0.344325849 0.33172077 0.489892747 0.367397908 0.289802309 1 16.96253699 -10.10237633 3.967016388 1.000152494 0.400706661 0.455495408 0.197330455 268705092.1 510996868.7 578209.4461 0.049160661 7.90E-11 10.10237633 -0.599445833 VNEEKDGPIS(ph)PK ddPTM_HeLa_A486_30min_R1 2 VNEEKDGPISPK 12 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 VNEEKDGPIS(1)PK;VNEEKDGPIS(1)PK ; 125.98 1.97E-05 1243980000 669580 834720 290630 1087870 760930 1435880 2132300 1828820 773830 2476800 TRUE FALSE FALSE 622645.8997 768573.7472 403169.7193 2532616.338 665487.064 1258735.725 1598775.987 1412437.609 840906.2075 1856593.159 0.335370136 0.413969934 0.217155664 1.364120258 0.358445285 0.677981451 0.861134266 0.760768509 0.452929713 1 20.82422628 VNFAMNVGK ddPTM_HeLa_A485_30min_R1 5 VNFAMNVGK 9 0 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;; ;;;; 217.64 1.23E-16 724470000 1398009 1106708 1137248 1616277 1719178 1703368 2303088 2036976 1145003 2340276 FALSE FALSE TRUE 1708991.279 1236127.874 1557963.36 1704570.12 1548010.602 1792553.715 1811014.434 1537404.442 1374794.6 1756888.263 0.972737604 0.703589352 0.8867743 0.970221132 0.881109308 1.020300353 1.030807976 0.875072408 0.78251681 1 20.74459101 -4.99686183 24.99554481 0.936321908 0.827418061 0.151509331 0.093856972 160.4132527 1277638.052 0.02457026 0.050731389 1.01E-05 4.99686183 -0.108903848 VNFAMNVGK ddPTM_HeLa_A486_30min_R1 4 VNFAMNVGK 9 0 P14618;P14618-2;P14618-3;B4DNK4;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;; ;;; 217.64 1.23E-16 611329000 997320 1392040 1036550 468990 1554650 1604450 1800190 1658110 1463190 1709660 FALSE FALSE TRUE 927413.0182 1281729.681 1437929.92 1091832.421 1359651.3 1406509.272 1349763.422 1280594.549 1590020.487 1281550.008 0.723665103 1.0001402 1.122024042 0.851962401 1.060942836 1.09750635 1.053227274 0.999254451 1.240701086 1 20.28945835 -4.276821339 3.704595132 1.048622217 0.693748565 0.521308403 0.094086275 0.196220422 5.106196635 0.023247292 0.187142535 5.29E-05 4.276821339 -0.354873651 VNFPENGFLS(ph)PDK ddPTM_HeLa_A485_30min_R1 1 VNFPENGFLSPDK 13 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLS(1)PDK 85.734 0.0020572 27669000 32921 39919 27868 39297 48522 33226 49864 60731 28953 56936 TRUE FALSE FALSE 40244.16287 44587.1798 38177.53288 41443.6956 43690.97931 34965.66198 39210.14905 45836.62703 34763.60153 42742.90303 0.941540233 1.04314814 0.893189984 0.969604137 1.022180905 0.818046026 0.917348759 1.072379829 0.813318681 1 15.38339728 VNFPENGFLS(ph)PDK ddPTM_HeLa_A486_30min_R1 1 VNFPENGFLSPDK 13 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLS(1)PDK 85.42 0.002236 33184000 26165 28927 16105 12775 24916 28792 39825 37032 22308 39574 TRUE FALSE FALSE 24330.96862 26634.71917 22341.28731 29740.84561 21790.80295 25239.93578 29860.36377 28600.622 24241.6754 29664.41282 0.820207323 0.897867736 0.753134318 1.002576582 0.734577255 0.850848993 1.00660559 0.964139158 0.81719721 1 14.85644561 -6.668764787 8.71457002 0.943799751 0.843412345 0.263054221 0.085087665 0.386109012 32.43222611 0.031330301 0.02421601 2.14E-07 6.668764787 -0.100387406 VNFPENGFLS(ph)PDKLSLLEK ddPTM_HeLa_A485_30min_R1 2 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLS(1)PDKLSLLEK;VNFPENGFLS(1)PDKLSLLEK ; 160.92 1.30E-12 3811200000 130776 86778 58018 233900 158051 125990 235600 230010 86706 322330 TRUE FALSE FALSE 159866.67 96925.93223 79481.27253 246677.3647 142314.8875 132586.6416 185262.1353 173599.6869 104107.0989 241979.063 0.660663233 0.400555036 0.328463428 1.01941615 0.58812893 0.547926089 0.765612252 0.717416146 0.430231846 1 17.8845227 -14 0.206107247 2.755964674 0.554630168 0.258770101 0.193468795 209.4166035 2.082449476 152.7451695 0.444033131 1.00E-14 14 -2.201334506 VNFPENGFLS(ph)PDKLSLLEK ddPTM_HeLa_A486_30min_R1 2 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLS(0.992)PDKLS(0.008)LLEK;VNFPENGFLS(1)PDKLSLLEK ; 259.53 2.03E-58 2039220000 480961 578207 210205 495007 508839 767560 985830 949820 456019 1234180 TRUE FALSE FALSE 447248.1176 532387.7715 291602.0055 1152401.312 445015.6679 672866.2512 739164.907 733566.7204 495547.0941 925133.2948 0.483441813 0.575471421 0.31519999 1.245659754 0.481028702 0.727318166 0.798982061 0.79293084 0.5356494 1 19.81930172 VNFPENGFLSPDKLS(ph)LLEK ddPTM_HeLa_A485_30min_R1 2 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLSPDKLS(1)LLEK;VNFPENGFLSPDKLS(1)LLEK ; 216.48 6.96E-35 275040000 162548 100599 66979 243300 181321 156863 293550 248630 104784 307670 TRUE FALSE FALSE 198706.2418 112363.178 91757.31933 256590.8629 163268.0446 165076.1041 230830.6444 187653.1027 125813.1877 230973.5312 0.860298757 0.486476426 0.397263352 1.110910248 0.706869067 0.714697062 0.999381371 0.812444186 0.544708249 1 17.81736801 -5.246032736 24.98826395 0.829184275 0.571859225 0.276575203 0.191770995 1096.584985 1778565.187 0.051521932 0.088829959 5.68E-06 5.246032736 -0.257325051 VNFPENGFLSPDKLS(ph)LLEK ddPTM_HeLa_A486_30min_R1 2 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLSPDKLS(1)LLEK;VNFPENGFLSPDKLS(1)LLEK ; 200.09 8.49E-26 250310000 119078 137832 64414 114314 143349 203463 265850 253760 114309 268080 TRUE FALSE FALSE 110731.2471 126909.6903 89356.82587 266128.7691 125368.8317 178361.8037 199331.5181 195984.3875 124217.3962 200951.0231 0.551035996 0.631545381 0.444669674 1.324346425 0.623877549 0.887588433 0.991940798 0.975284348 0.618147617 1 17.6164844 -5.213771861 24.99997061 0.905927559 0.551329731 0.438382036 0.194074674 384.4088305 201608.5697 0.050281169 0.08708928 6.11E-06 5.213771861 -0.354597828 VNFSEEGET(ph)EEDDQDSSHSSVTTVK ddPTM_HeLa_A485_30min_R1 1 VNFSEEGETEEDDQDSSHSSVTTVK 25 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YD16 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 VNFS(0.011)EEGET(0.989)EEDDQDSSHSSVTTVK 107.29 4.68E-08 0 32367 40011 33318 19041 49018 31357 39724 54763 31992 48210 TRUE FALSE FALSE 39566.92749 44689.9384 45643.71468 20081.16162 44137.59581 32998.80403 31236.64288 41332.28838 38412.50095 36192.13424 1.093246594 1.234796989 1.261150127 0.554848782 1.219535591 0.911767287 0.863078222 1.142024068 1.061349427 1 15.14338857 VNFSEEGET(ph)EEDDQDSSHSSVTTVK ddPTM_HeLa_A486_30min_R1 3 VNFSEEGETEEDDQDSSHSSVTTVK 25 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YD16 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 VNFS(0.024)EEGET(0.976)EEDDQDSSHSSVTTVK;VNFSEEGET(1)EEDDQDSSHSSVTTVK;VNFS(0.001)EEGET(0.999)EEDDQDSSHSSVTTVK ;; 255 2.58E-61 811750000 384851 363476 316923 27281.2 440448 248092 303926 253071 442949 128186 TRUE FALSE FALSE 357874.9323 334672.838 439644.0731 63512.01232 385202.9048 217484.9315 227880.5002 195452.2578 481344.176 96087.39125 3.724473395 3.483004728 4.575460603 0.660981753 4.008880872 2.263407598 2.371596286 2.034109317 5.00944161 1 16.55205951 -5.204090565 24.99988961 2.571789535 3.883181922 0.222060672 1.233610919 450.2266494 196264.8359 0.316182892 0.547644565 6.25E-06 5.204090565 1.311392387 VNGDAS(ph)PAAAESGAK ddPTM_HeLa_A485_30min_R1 10 VNGDASPAAAESGAK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(0.999)PAAAES(0.001)GAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK ;;;;;;;;; 322.39 1.96E-78 22331964000 11858730 9463630 6369884 14908550 10768290 10355510 15738340 13141270 8509853 20889990 TRUE FALSE FALSE 14496663.58 10570319.21 8726369.165 15722966.34 9696161.238 10897708.49 12375715.09 9918352.928 10217702.44 15682499.94 0.924384736 0.674020038 0.55643993 1.002580353 0.618279054 0.694896128 0.789141727 0.632447184 0.651535309 1 23.90265222 -10.30764368 5.544777276 1.000040062 0.723499347 0.272939114 0.133516251 6.38E-05 7.97E-06 0.124814552 0.030267598 4.92E-11 10.30764368 -0.276540715 VNGDAS(ph)PAAAESGAK ddPTM_HeLa_A486_30min_R1 9 VNGDASPAAAESGAK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK;VNGDAS(1)PAAAESGAK ;;;;;;;; 328.38 2.95E-90 26946500000 15479440 15287230 7207930 6450650 12161140 17274790 20217080 17740870 11499640 20738780 TRUE FALSE FALSE 14394411.19 14075814.22 9999033.531 15017439.2 10635776.42 15143602.05 15158552.75 13701661.18 12496438.05 15545654.5 0.925944365 0.905450087 0.64320441 0.966021675 0.684163952 0.974137309 0.975099038 0.881382072 0.803854097 1 23.89000802 -6.328028205 24.99999772 0.922493651 0.827164753 0.181423538 0.108011645 364.8935201 136993.4543 0.03738082 0.032966789 4.70E-07 6.328028205 -0.095328898 VNGDDHHEEDMDMS(ph)D ddPTM_HeLa_A485_30min_R1 11 VNGDDHHEEDMDMSD 15 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D ;;;;;;;;;; 329.35 2.78E-90 14675230000 5803050 7082850 6518020 6078900 8751260 7120810 9144070 9871140 6609170 8174330 TRUE FALSE FALSE 7093918.452 7911127.695 8929306.835 6410974.914 7879953.827 7493644.601 7190364.744 7450227.438 7935569.796 6136619.968 1.155997681 1.289166958 1.455085516 1.044707827 1.284086984 1.221135517 1.171714198 1.214060423 1.293149949 1 22.54901281 -12.71346281 0.359796533 1.69E-20 1.244765012 0.318969721 0.102608411 210.7018929 4.142150181 158.9652544 0.075756339 1.93E-13 12.71346281 1.244765012 VNGDDHHEEDMDMS(ph)D ddPTM_HeLa_A486_30min_R1 10 VNGDDHHEEDMDMSD 15 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D ;;;;;;;;; 379.69 3.62E-119 13161470000 8054010 8379490 6598100 3030720 9419350 8289340 9260100 9702290 7252830 9724750 TRUE FALSE FALSE 7489465.49 7715468.695 9153061.023 7055669.324 8237887.291 7266685.511 6943125.037 7493290.367 7881511.144 7289609.303 1.027416584 1.058420057 1.25563122 0.967907748 1.130086257 0.996855278 0.952468747 1.027941287 1.08119802 1 22.79741006 -6.274765624 24.37064084 1.009737496 1.088908035 0.200399193 0.07604112 951.1519047 1739432.455 0.026708601 0.023691381 5.31E-07 6.274765624 0.079170539 VNGTTVS(ph)SPSTSLQR ddPTM_HeLa_A485_30min_R1 3 VNGTTVSSPSTSLQR 15 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532;P11532-9;P11532-16;A0A5H1ZRR9;P11532-13 A0A5H1ZRP9 DMD Dystrophin 1 0 VNGTTVS(0.394)S(0.394)PS(0.177)T(0.026)S(0.008)LQR;VNGTTVS(0.415)S(0.415)PS(0.129)T(0.036)S(0.004)LQR;VNGT(0.014)T(0.025)VS(0.47)S(0.47)PS(0.017)T(0.004)S(0.001)LQR ;; 198.61 3.09E-25 1641600000 1352470 1698640 1502590 1424400 1955210 1613950 1972690 2225150 1442130 1921770 TRUE FALSE FALSE 1653322.286 1897281.172 2058460.569 1502211.365 1760542.427 1698453.926 1551208.666 1679428.474 1731552.263 1442708.107 1.145985302 1.315083185 1.426803218 1.041244142 1.220303968 1.177267889 1.075206176 1.164080569 1.200209699 1 20.46034801 -5.268829648 24.9995839 1.136324832 1.297869832 0.414804207 0.092157378 566.8562481 1917544.077 0.025486728 0.038685286 5.38E-06 5.268829648 0.161544999 VNGTTVS(ph)SPSTSLQR ddPTM_HeLa_A486_30min_R1 3 VNGTTVSSPSTSLQR 15 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532;P11532-9;P11532-16;A0A5H1ZRR9;P11532-13 A0A5H1ZRP9 DMD Dystrophin 1 0 VNGTTVS(0.467)S(0.467)PS(0.059)T(0.007)SLQR;VNGTTVS(0.497)S(0.497)PS(0.007)TSLQR;VNGTTVS(0.679)S(0.241)PS(0.071)T(0.008)S(0.001)LQR ;; 219.03 1.63E-33 691260000 1304120 1481530 1108960 508540 1610580 1400310 1565200 1569400 1236890 1562320 TRUE FALSE FALSE 1212707.922 1364128.167 1538379.011 1183906.82 1408566.038 1227553.99 1173570.405 1212081.88 1344104.621 1171104.903 1.035524588 1.164821498 1.31361333 1.010931486 1.20276675 1.048201563 1.002105279 1.034990014 1.147723503 1 20.15943888 -6.286759558 21.28192969 1.046009644 1.148463264 0.241562777 0.08756573 176.8691865 148658.8298 0.030694829 0.027094011 5.17E-07 6.286759558 0.102453619 VNGTTVSS(ph)PSTSLQR ddPTM_HeLa_A485_30min_R1 1 VNGTTVSSPSTSLQR 15 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532;P11532-9;P11532-16;A0A5H1ZRR9;P11532-13 A0A5H1ZRP9 DMD Dystrophin 1 0 VNGTTVS(0.225)S(0.766)PS(0.008)T(0.001)SLQR 219.03 1.63E-33 637370000 425260 540440 462420 450740 607850 496450 639380 720930 419890 637610 TRUE FALSE FALSE 519857.6199 603639.7568 633488.4009 475362.7849 547330.3197 522443.3543 502771.2397 544120.7871 504158.0715 478665.5613 1.086056031 1.261088755 1.323446791 0.993100033 1.143450384 1.091457996 1.050360169 1.136745216 1.053257456 1 18.86865849 -5.264464987 24.99999176 1.076130314 1.227286348 0.491411984 0.072562847 223.5436902 1847101.807 0.019840447 0.030939504 5.44E-06 5.264464987 0.151156033 VNGTTVSS(ph)PSTSLQR ddPTM_HeLa_A486_30min_R1 1 VNGTTVSSPSTSLQR 15 0 A0A5H1ZRP9;P11532-5;H0Y304;P11532-15;P11532-8;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A5H1ZRP7;A0A087WV90;A0A5H1ZRQ1;A0A5H1ZRQ8;P11532-14;P11532-11;P11532-2;A0A075B6G3;P11532-3;P11532-12;P11532-17;P11532-6;P11532-7;P11532;P11532-9;P11532-16;A0A5H1ZRR9;P11532-13 A0A5H1ZRP9 DMD Dystrophin 1 0 VNGTTVS(0.24)S(0.738)PS(0.021)TSLQR 274.1 3.53E-58 852300000 492500 564910 440030 176460 597780 478950 530780 547410 450340 586940 TRUE FALSE FALSE 457978.2933 520144.4742 610421.4004 410807.7978 522800.8583 419862.0186 397973.23 422776.6929 489375.8338 439966.4037 1.040939239 1.182236802 1.387427302 0.933725381 1.1882745 0.954304727 0.904553681 0.960929492 1.112302734 1 18.74703384 -5.284445846 24.99649692 1.007097245 1.20140473 0.390806794 0.112018706 800.3719891 869601.1759 0.032224229 0.04782849 5.19E-06 5.284445846 0.194307485 VNHEPEPAGGATPGATLPKS(ph)PSQLR ddPTM_HeLa_A485_30min_R1 5 VNHEPEPAGGATPGATLPKSPSQLR 25 1 O00499-6;O00499-2;O00499;O00499-11 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 VNHEPEPAGGATPGAT(0.04)LPKS(0.958)PS(0.003)QLR;VNHEPEPAGGATPGAT(0.002)LPKS(0.995)PS(0.003)QLR;VNHEPEPAGGATPGATLPKS(0.965)PS(0.035)QLR;VNHEPEPAGGATPGATLPKS(0.746)PS(0.254)QLR;VNHEPEPAGGATPGATLPKS(0.958)PS(0.042)QLR ;;;; 244.26 1.81E-49 4887420000 1238569 1573532 1213065 1425359 2423580 2000610 2884670 3764040 1568744 2309870 TRUE FALSE FALSE 1514084.401 1757542.879 1661828.223 1503222.753 2182279.865 2105358.846 2268336.689 2840903.288 1883576.531 1734061.919 0.873143216 1.013541016 0.958344224 0.866879514 1.258478628 1.214119763 1.308105936 1.638294029 1.086222188 1 20.72572398 -5.789466882 9.135565357 1.284301213 0.936281841 0.47694729 0.163332279 0.224725308 67.83372048 0.049802535 0.057206694 1.62E-06 5.789466882 -0.348019372 VNHEPEPAGGATPGATLPKS(ph)PSQLR ddPTM_HeLa_A486_30min_R1 4 VNHEPEPAGGATPGATLPKSPSQLR 25 1 O00499-6;O00499-2;O00499;O00499-11 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 VNHEPEPAGGATPGATLPKS(0.942)PS(0.058)QLR;VNHEPEPAGGATPGATLPKS(0.991)PS(0.009)QLR;VNHEPEPAGGATPGAT(0.065)LPKS(0.931)PS(0.004)QLR;VNHEPEPAGGAT(0.001)PGAT(0.003)LPKS(0.924)PS(0.072)QLR ;;; 265.6 3.32E-62 11257190000 2002810 2133810 1649400 1159471 3299730 2564340 3527740 3674550 1884790 2969280 TRUE FALSE FALSE 1862423.362 1964719.124 2288091.852 2699307.084 2885847.095 2247977.803 2645062.139 2837935.18 2048165.115 2225752.961 0.83676104 0.88272111 1.028008001 1.212761313 1.296571158 1.009985314 1.18838981 1.275044998 0.920212238 1 21.08586204 -4.882293789 2.818032245 1.144343374 0.849924167 0.449487576 0.117245692 0.216972003 3.426164007 0.03143793 0.081509804 1.31E-05 4.882293789 -0.294419207 VNIAFNYDMPEDSDTYLHR ddPTM_HeLa_A485_30min_R1 1 VNIAFNYDMPEDSDTYLHR 19 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 102.98 6.05E-05 25227000 16255 14672 15120 20673 24535 16733 22874 22056 16772 26894 FALSE FALSE TRUE 19870.86867 16387.76277 20713.5172 21802.31364 22092.20925 17609.11401 17986.78304 16646.73142 20137.98656 20189.82075 0.984202332 0.811684411 1.025938638 1.079866628 1.094225131 0.872177828 0.890883741 0.824511105 0.997432657 1 14.30134048 -6.294876617 24.9571481 0.904400673 0.994735666 0.171722559 0.087826721 1128.226119 842090.4978 0.033029713 0.029131177 5.07E-07 6.294876617 0.090334993 VNILFDFVK ddPTM_HeLa_A485_30min_R1 1 VNILFDFVK 9 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 0 99.653 0.018846 6785500 8345.6 8938.7 6256.6 7935 10429 9196.3 9720.3 11818 7902.4 10980 FALSE FALSE TRUE 10202.04993 9984.003209 8571.176699 8368.468958 9390.652142 9677.804048 7643.478497 8919.61697 9488.339195 8242.888072 1.237679056 1.211226347 1.039826894 1.015235059 1.139242952 1.174079275 0.927281607 1.082098518 1.151094023 1 13.00893419 -4.717798125 6.764214749 1.068753984 1.227312337 0.436579708 0.071946872 0.187441299 21.20993228 0.01878904 0.049555119 1.92E-05 4.717798125 0.158558353 VNILFDFVK ddPTM_HeLa_A486_30min_R1 1 VNILFDFVK 9 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 0 127.4 0.0027892 7488100 14888 15009 11391 6728.8 15022 17163 18720 17466 13564 19030 FALSE FALSE TRUE 13844.42808 13819.63218 15801.90026 15664.98645 13137.80069 15045.60356 14036.058 13489.37308 14739.73844 14264.76414 0.970533263 0.968795001 1.107757556 1.098159514 0.920996699 1.054739035 0.983967058 0.945642911 1.033297032 1 13.80016827 -5.755834629 24.99996913 0.990013862 1.036592019 0.144590553 0.055449541 300.9364942 1342320.361 0.017351944 0.021774085 1.75E-06 5.755834629 0.046578157 VNKS(ph)FGEESK ddPTM_HeLa_A486_30min_R1 1 VNKSFGEESK 10 1 A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6;A0A087WX84;A0A6I8PUA5;A0A0A0MRE9;Q99996-4 A0A0A0MRF6 AKAP9 A-kinase anchor protein 9 1 0 VNKS(1)FGEESK 51.546 0.022519 181730000 118270 89081 68616 52544 132400 107370 140990 139100 81941 139000 TRUE FALSE FALSE 109979.8837 82021.89713 95185.9528 122325.0874 115793.1574 94123.78106 105712.8108 107429.9665 89043.71186 104193.4953 1.055535026 0.787207464 0.913549858 1.174018466 1.111328084 0.903355635 1.014581673 1.031062124 0.854599528 1 16.66890569 -5.040569675 24.97991345 1.015951257 0.903622884 0.139850796 0.104837322 820.5992148 505265.7164 0.028722566 0.049757664 9.11E-06 5.040569675 -0.112328372 VNLFPGLS(ph)PSALK ddPTM_HeLa_A485_30min_R1 1 VNLFPGLSPSALK 13 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VNLFPGLS(0.793)PS(0.207)ALK 202.01 1.71E-21 607620000 205710 177060 157900 232370 260410 193690 256410 265770 175190 303770 TRUE FALSE FALSE 251469.4798 197765.6268 216313.7808 245063.7847 234482.666 203831.3089 201625.9088 200589.4908 210349.0261 228045.7295 1.102715146 0.867219164 0.948554403 1.074625626 1.028226517 0.893817698 0.88414683 0.879602048 0.922398444 1 17.79896363 -6.268491871 24.82608832 0.906477743 0.997467876 0.282615216 0.069075892 684.759554 2410474.456 0.024476978 0.022035748 5.39E-07 6.268491871 0.090990133 VNLFPGLS(ph)PSALK ddPTM_HeLa_A486_30min_R1 2 VNLFPGLSPSALK 13 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VNLFPGLS(0.963)PS(0.037)ALK;VNLFPGLS(0.749)PS(0.251)ALK ; 169.3 4.99E-12 1051530000 960420 980440 567570 434450 979680 1006800 1208440 1212970 774630 1143920 TRUE FALSE FALSE 893099.5176 902746.3637 787348.3041 1011421.556 856799.3992 882591.2524 906075.5304 936803.2099 841775.5521 857474.9863 1.041545855 1.052796149 0.918217227 1.179534764 0.99921212 1.029290961 1.056678673 1.092513747 0.981691088 1 19.70973506 -10.89347131 10.5869637 0.996970094 1.040667217 0.030631977 0.065342663 0.004722021 4.75E-05 0.06393093 0.014507075 1.28E-11 10.89347131 0.043697123 VNLFPGLSPS(ph)ALK ddPTM_HeLa_A485_30min_R1 1 VNLFPGLSPSALK 13 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VNLFPGLS(0.257)PS(0.743)ALK 226.39 1.34E-27 448840000 536770 506440 413920 630190 750440 593780 780750 771190 512940 922650 TRUE FALSE FALSE 656172.6347 565663.7526 567046.2326 664615.684 675723.5586 624869.4026 613936.3844 582054.4433 615882.353 692650.3351 0.947336053 0.816665674 0.818661602 0.959525536 0.975562307 0.902142641 0.886358316 0.840329404 0.889167769 1 19.40176771 VNLS(ph)PNR ddPTM_HeLa_A486_30min_R1 1 VNLSPNR 7 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 VNLS(1)PNR 103.01 0.0029525 0 568090 617610 487550 177140 651720 565070 646550 600230 531650 602870 TRUE FALSE FALSE 528269.8246 568668.3343 676342.417 412390.8722 569975.2006 495357.4086 484776.3515 463570.7319 577733.8501 451907.428 1.168977963 1.258373506 1.496639301 0.912556083 1.261265395 1.096147967 1.072733754 1.025809056 1.278434065 1 18.78566775 -5.262516107 24.99982532 1.099866468 1.303034572 0.368188237 0.129103689 106.8682572 2481320.355 0.03473191 0.054924596 5.46E-06 5.262516107 0.203168104 VNLS(ph)PNRNQSAK ddPTM_HeLa_A485_30min_R1 1 VNLSPNRNQSAK 12 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 VNLS(0.999)PNRNQS(0.001)AK 48.216 0.013187 0 60705 99882 72255 50493 122160 110410 154680 211550 62343 76157 TRUE FALSE FALSE 74208.61782 111562.331 98985.13128 53251.30473 109997.3215 116190.8969 121631.3544 159667.0308 74854.66826 57172.46147 1.297978361 1.951329857 1.731342831 0.931415289 1.923956371 2.032287816 2.127446523 2.792726196 1.309278389 1 15.80303278 -5.965920064 24.98806066 1.981202439 1.517139951 0.091207915 0.521758272 347.7995862 255011.8318 0.157496489 0.178583517 1.08E-06 5.965920064 -0.464062488 VNMS(ph)KYDAAR ddPTM_HeLa_A485_30min_R1 2 VNMSKYDAAR 10 1 Q86UK0-2;Q86UK0 Q86UK0-2 ABCA12 ATP-binding cassette sub-family A member 12 1 0 VNMS(0.996)KY(0.004)DAAR;VNMS(0.975)KY(0.025)DAAR ; 65.232 0.026647 1447360000 517810 541250 421400 609470 741340 554210 773810 814660 494910 902250 TRUE FALSE FALSE 632995.0481 604544.4793 577293.3959 642763.8028 667529.5866 583227.5786 608479.1721 614863.3577 594233.8974 677335.6797 0.934536696 0.892533049 0.85230029 0.94895902 0.985522551 0.861061356 0.898342122 0.907767561 0.877310786 1 19.36951147 -10.12592108 4.658423147 1.000007923 0.906514301 0.344891505 0.038666416 54376675.96 2.039051673 4621.503299 0.009703843 7.48E-11 10.12592108 -0.093493622 VNNGNTAPEDS(ph)SPAK ddPTM_HeLa_A486_30min_R1 1 VNNGNTAPEDSSPAK 15 0 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 VNNGNTAPEDS(0.641)S(0.359)PAK 107.69 0.00013132 0 112080 116840 49896 72329 110790 128740 175690 140740 90215 188860 TRUE FALSE FALSE 104223.7708 107581.1729 69217.06746 168385.5673 96893.68512 112857.3677 131730.5037 108696.5743 98034.90884 141568.2267 0.736208775 0.759924563 0.488930808 1.189430504 0.684431015 0.797194189 0.930508962 0.76780346 0.692492313 1 17.11113798 -14 0.231587058 2.097177364 0.765143101 0.118372329 0.172334219 377.9316493 3.782816565 195.944156 0.29112543 1.00E-14 14 -1.332034264 VNNGNTAPEDS(ph)SPAKK ddPTM_HeLa_A486_30min_R1 3 VNNGNTAPEDSSPAKK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 VNNGNTAPEDS(0.637)S(0.363)PAKK;VNNGNTAPEDS(0.577)S(0.423)PAKK;VNNGNTAPEDS(0.611)S(0.389)PAKK ;; 161.51 4.48E-12 1657180000 935030 857700 335217 650874 697740 1160490 1603420 1363940 744833 1937130 TRUE FALSE FALSE 869489.2255 789732.7283 465021.9998 1515267.565 610222.943 1017320.543 1202227.357 1053400.637 809395.7242 1452060.039 0.598797021 0.543870575 0.320249843 1.043529554 0.420246358 0.700605013 0.827946038 0.725452535 0.557412023 1 20.46966968 -14 0.086679794 2.10842244 0.339662775 0.261446953 0.191317193 311.7763898 1.886424711 65.31448001 5.024781314 1.00E-14 14 -1.768759665 VNNGNTAPEDSS(ph)PAKK ddPTM_HeLa_A485_30min_R1 3 VNNGNTAPEDSSPAKK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 VNNGNTAPEDS(0.299)S(0.701)PAKK;VNNGNTAPEDS(0.249)S(0.751)PAKK;VNNGNTAPEDS(0.059)S(0.941)PAKK ;; 199.99 2.36E-25 1905240000 1009360 704850 477500 1846000 1050600 1039250 1746350 1622000 748960 2530820 TRUE FALSE FALSE 1233888.65 787276.0761 654147.1204 1946842.306 945998.5751 1093663.523 1373228.056 1224201.957 899269.4021 1899933.15 0.649437929 0.414370409 0.344300072 1.024689898 0.497911505 0.575632634 0.722777039 0.64433949 0.473316339 1 20.85751723 -11.188214 2.37556938 2.131347683 0.596010207 0.312298371 0.180684741 16775523.79 3043258.681 102346235.6 0.045120569 6.48E-12 11.188214 -1.535337476 VNNGNTAPEDSS(ph)PAKK ddPTM_HeLa_A486_30min_R1 1 VNNGNTAPEDSSPAKK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 VNNGNTAPEDS(0.152)S(0.848)PAKK 208.47 1.06E-25 655710000 322730 297220 131860 230700 254850 362240 516330 443040 239900 660420 TRUE FALSE FALSE 300108.2936 273667.2047 182919.7233 537081.2589 222884.3366 317550.5118 387138.7728 342169.4635 260694.7252 495046.5334 0.606222392 0.552811072 0.369500059 1.084910655 0.450229062 0.641455884 0.782025015 0.691186465 0.526606506 1 18.91720462 -14 0.238745012 3.008498415 0.602217107 0.249151646 0.188220086 246.5420122 2.462624061 240.9009678 0.296851628 1.00E-14 14 -2.406281308 VNPCIGGVILFHETLYQK ddPTM_HeLa_A485_30min_R1 2 VNPCIGGVILFHETLYQK 18 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 234.48 7.09E-37 56234000 61268 59021 55988 45953 86129 53534 72331 55093 57835 95932 FALSE FALSE TRUE 74896.85523 65922.99254 76700.29106 48463.29603 77553.69434 56336.95746 56876.89096 41581.35537 69441.95401 72017.9179 1.039975292 0.91536932 1.06501678 0.672933868 1.076866655 0.782263069 0.789760279 0.577375139 0.964231625 1 16.13606827 -6.302815695 24.69402085 0.794251554 0.942433701 0.140688869 0.153101525 744.55401 444358.9029 0.051581712 0.04549133 4.98E-07 6.302815695 0.148182146 VNPCIGGVILFHETLYQK ddPTM_HeLa_A486_30min_R1 2 VNPCIGGVILFHETLYQK 18 0 P04075-2;P04075;J3KPS3;H3BQN4;H3BPS8;H3BUH7;H3BR04;H3BMQ8;H3BU78 P04075-2 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 237.52 5.59E-37 60826000 47436 63539 48785 12183.5 62287 61456 60454 57315 60665 47578 FALSE FALSE TRUE 44110.98136 58503.93823 67675.85851 28363.80372 54474.38366 53874.18356 45327.76978 44265.62568 65923.49105 35664.15912 1.236843443 1.640412663 1.897587387 0.795302747 1.527426554 1.51059733 1.270961405 1.24117957 1.848452134 1 15.12218734 -10.97355495 2.935630506 0.63621705 1.434992863 0.154726331 0.308923312 73403733.83 68680096.87 181913792.6 0.07824915 1.06E-11 10.97355495 0.798775813 VNPHKVS(ph)PASSVDSNIPSSQGYKK ddPTM_HeLa_A485_30min_R1 2 VNPHKVSPASSVDSNIPSSQGYKK 24 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 VNPHKVS(0.489)PAS(0.489)S(0.021)VDSNIPSSQGYKK;VNPHKVS(0.955)PAS(0.037)S(0.008)VDSNIPSSQGYKK ; 191.92 3.06E-21 1604610000 599580 448760 293300 669690 673740 701860 1011480 988640 429920 844780 TRUE FALSE FALSE 732954.5025 501238.5783 401803.8752 706273.469 606660.08 738608.3043 795369.035 746174.4899 516201.0005 634191.893 1.155729852 0.790357909 0.633568293 1.113658936 0.956587567 1.164644822 1.254145699 1.176575258 0.813950803 1 19.27455991 -5.301683943 24.97806407 1.082943483 0.852932434 0.239830067 0.168707046 655.6668285 406942.7335 0.048544703 0.072004497 4.99E-06 5.301683943 -0.230011049 VNPHKVS(ph)PASSVDSNIPSSQGYKK ddPTM_HeLa_A486_30min_R1 1 VNPHKVSPASSVDSNIPSSQGYKK 24 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 VNPHKVS(0.972)PAS(0.016)S(0.012)VDSNIPSSQGYKK 115.18 7.58E-05 804530000 179780 173970 76720 72302 142460 164430 254060 217250 131650 233940 TRUE FALSE FALSE 167178.3504 160183.9836 106428.0386 168322.7099 124591.3384 144144.2984 190491.5008 167786.9175 143061.528 175359.9013 0.953344232 0.91345845 0.606912058 0.959870008 0.710489328 0.821991215 1.086288823 0.956814621 0.815816654 1 17.41995937 -6.707376601 23.59276333 0.96113122 0.822223349 0.240524626 0.119002857 78.6489863 34321.42364 0.045235436 0.035039149 1.96E-07 6.707376601 -0.138907871 VNPSVNPSIS(ph)PAHGVAR ddPTM_HeLa_A485_30min_R1 1 VNPSVNPSISPAHGVAR 17 0 Q15788-2;Q15788-3;Q15788;B5MCN7 Q15788-2 NCOA1 Nuclear receptor coactivator 1 1 0 VNPSVNPSIS(1)PAHGVAR 115.88 7.20E-05 170630000 3916 9249.9 4481.8 2637.8 7357.1 8716.8 9524.2 8841.7 4790.8 6012 TRUE FALSE FALSE 4787.10069 10331.59534 6139.804323 2781.896335 6624.601292 9173.198169 7489.276864 6673.259212 5752.269616 4513.319043 1.060660823 2.289134724 1.360374541 0.616374847 1.467789276 2.032472795 1.659372358 1.478570238 1.274509859 1 12.13997305 -8.00044284 2.554211496 1.002848295 1.511748826 0.111237496 0.439103078 0.650068499 9.961321012 0.440713388 0.119838308 9.99E-09 8.00044284 0.508900531 VNPSVNPSIS(ph)PAHGVAR ddPTM_HeLa_A486_30min_R1 1 VNPSVNPSISPAHGVAR 17 0 Q15788-2;Q15788-3;Q15788;B5MCN7 Q15788-2 NCOA1 Nuclear receptor coactivator 1 1 0 VNPSVNPSIS(1)PAHGVAR 143.14 6.18E-08 144410000 80205 81568 62389 19674 84903 68105 79006 73848 56946 73885 TRUE FALSE FALSE 74583.04368 75104.25461 86547.69164 45802.06627 74253.67405 59702.89754 59237.86316 57034.42249 61882.12513 55383.71509 1.346660179 1.356071085 1.562692057 0.826995195 1.340713131 1.077986506 1.069589916 1.029804924 1.117334311 1 15.75717421 -5.250207957 24.99997799 1.079390263 1.415234105 0.605529685 0.131239771 508.6441871 1132187.054 0.034291094 0.058704722 5.62E-06 5.250207957 0.335843842 VNPTVFFDIAVDGEPLGR ddPTM_HeLa_A485_30min_R1 4 VNPTVFFDIAVDGEPLGR 18 0 P62937;C9J5S7;F8WE65;E5RIZ5 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;; ;;; 196.33 7.71E-22 68144600 28889.67 39015.56 38393.86 29997.49 48717.9 38922.99 45930 51069.7 31523.9 43587.1 FALSE FALSE TRUE 35316.07742 43578.09035 52597.34652 31636.17692 43867.37482 40960.93757 36116.68029 38544.776 37850.45758 32721.63813 1.079288185 1.331782051 1.60741789 0.966827418 1.340622821 1.251799724 1.103755263 1.177959852 1.156740913 1 14.99795735 -7.636723127 0.407660333 0.996851922 1.300003845 0.192206759 0.162364457 1.819950084 0.867849345 0.212249617 0.143981864 2.31E-08 7.636723127 0.303151923 VNPTVFFDIAVDGEPLGR ddPTM_HeLa_A486_30min_R1 1 VNPTVFFDIAVDGEPLGR 18 0 P62937;C9J5S7;F8WE65;E5RIZ5 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 132.86 0.00028801 27102000 13421 15261 23237 9827.6 36184 21400 23744 22868 19596 19065 FALSE FALSE TRUE 12480.25721 14051.66278 32234.98871 22879.14946 31645.46532 18759.88558 17803.00006 17661.4556 21294.59706 14290.99991 0.873294891 0.983252598 2.255614647 1.600948122 2.214363272 1.312706298 1.245749085 1.235844638 1.490070478 1 13.80281924 -6.491154745 24.9136706 1.264949172 1.60746527 0.127811727 0.428859681 1456.853239 1144105.967 0.160726073 0.141604473 3.23E-07 6.491154745 0.342516098 VNPVTSLSENYTCS(ph)DSEESSEKDK ddPTM_HeLa_A485_30min_R1 5 VNPVTSLSENYTCSDSEESSEKDK 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLSENYT(0.005)CS(0.992)DS(0.002)EESSEKDK;VNPVTSLSENYT(0.003)CS(0.996)DS(0.001)EESSEKDK;VNPVTSLSENYT(0.001)CS(0.948)DS(0.048)EES(0.001)S(0.002)EKDK;VNPVTSLSENYT(0.002)CS(0.994)DS(0.004)EESSEKDK;VNPVTSLSENYT(0.002)CS(0.981)DS(0.016)EESSEKDK ;;;; 273.43 3.43E-75 11098310000 4084490 2110935 1644522 8902910 3170500 2806077 5214890 3319960 2420403 11449870 TRUE FALSE FALSE 4993070.709 2357790.486 2252899.122 9389253.43 2854833.888 2952998.853 4100686.15 2505734.605 2906155.681 8595628.128 0.580884914 0.274301127 0.262098254 1.092328948 0.332126268 0.343546604 0.477066491 0.291512681 0.338096953 1 23.03517164 -10.80093677 3.149100996 1.131607327 0.442613738 0.332616978 0.236458835 669011535.4 714755897.5 681514019.2 0.061349426 1.58E-11 10.80093677 -0.688993589 VNPVTSLSENYTCS(ph)DSEESSEKDK ddPTM_HeLa_A486_30min_R1 5 VNPVTSLSENYTCSDSEESSEKDK 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLSENYT(0.022)CS(0.977)DS(0.001)EESSEKDK;VNPVTSLSENYTCS(1)DSEESSEKDK;VNPVTSLSENYTCS(0.988)DS(0.011)EESSEKDK;VNPVTSLSENYT(0.005)CS(0.983)DS(0.011)EESS(0.001)EKDK;VNPVTSLSENYTCS(0.998)DS(0.002)EESSEKDK ;;;; 311.78 2.39E-105 14383080000 3926580 4206500 1381530 2861520 2977640 5574540 7457020 5938620 3450530 8943900 TRUE FALSE FALSE 3651347.019 3873161.62 1916495.415 6661763.173 2604156.626 4886809.933 5591194.724 4586525.865 3749624.719 6704289.225 0.544628505 0.577713981 0.285861088 0.993656889 0.388431426 0.728907982 0.83397278 0.684118139 0.559287434 1 22.67665296 -14 0.078762193 2.184527141 0.256941738 0.289317675 0.189721833 334.8882482 1.868001396 69.97351303 6.75488409 1.00E-14 14 -1.927585403 VNPVTSLSENYTCS(ph)DSEESSEKDKLAIPK ddPTM_HeLa_A485_30min_R1 2 VNPVTSLSENYTCSDSEESSEKDKLAIPK 29 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLSENYT(0.029)CS(0.96)DS(0.005)EES(0.005)S(0.001)EKDKLAIPK;VNPVTSLSENYT(0.051)CS(0.947)DS(0.001)EESSEKDKLAIPK ; 233.72 1.44E-40 7200600000 212625 142552 92072 379960 238680 241620 478140 459560 162340 514070 TRUE FALSE FALSE 259922.6977 159222.2164 126133.2642 400716.2527 214916.1811 254270.8496 375981.483 346852.1894 194920.1489 385921.8098 0.673511295 0.412576362 0.32683632 1.038335338 0.556890478 0.658866234 0.97424264 0.89876286 0.50507679 1 18.55794905 -5.249353238 24.99203709 0.791053557 0.46513483 0.386147445 0.192188625 812.1134428 1679306.354 0.05179023 0.08883068 5.63E-06 5.249353238 -0.325918727 VNPVTSLSENYTCS(ph)DSEESSEKDKLAIPK ddPTM_HeLa_A486_30min_R1 1 VNPVTSLSENYTCSDSEESSEKDKLAIPK 29 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLSENY(0.028)T(0.218)CS(0.753)DS(0.001)EESSEKDKLAIPK 113.33 7.29E-05 3500700000 162350 159160 61089 133950 173010 204840 329640 292610 132740 354590 TRUE FALSE FALSE 150970.1034 146547.5819 84744.29682 311842.3695 151309.4725 179568.9235 247160.5854 225989.0906 144246.0101 265798.356 0.567987348 0.551348715 0.318829274 1.173229113 0.56926414 0.675583274 0.929880038 0.850227571 0.542689625 1 18.01997266 -5.234745376 24.95713417 0.801982425 0.486584488 0.393465419 0.192886123 801.8909429 749714.197 0.0509477 0.088212467 5.82E-06 5.234745376 -0.315397937 VNQIGSVTESLQACK ddPTM_HeLa_A485_30min_R1 2 VNQIGSVTESLQACK 15 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 293.13 1.45E-65 155466000 132636 121006 121151 164325 181642 160972 210023 215510 131407 230590 FALSE FALSE TRUE 162140.4206 135156.5991 165969.7964 173301.6587 163557.0847 169400.245 165149.8703 162655.8346 157779.1796 173108.1567 0.936642292 0.780763897 0.958763582 1.00111781 0.944825985 0.978580376 0.954027086 0.939619702 0.911448557 1 17.40131418 -4.822064065 15.09393144 0.96013387 0.858717474 0.470901811 0.043385307 1.407578728 349.6300208 0.010689252 0.022256226 1.51E-05 4.822064065 -0.101416396 VNQPASFAVSLNGAK ddPTM_HeLa_A486_30min_R1 1 VNQPASFAVSLNGAK 15 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 133.71 4.47E-05 27529000 15901 27943 22106 9311.8 32279 27489 34712 30778 24853 25300 FALSE FALSE TRUE 14786.42201 25728.69491 30666.03522 21678.34099 28230.26683 24097.68667 26026.69045 23770.52128 27007.27805 18964.71532 0.779680673 1.356661277 1.617004774 1.143088131 1.488567919 1.270659024 1.372374434 1.253407756 1.42408033 1 14.2110301 -4.26047897 24.68785808 1.341332291 0.779680462 0.491754432 0.165605978 52.05096152 1337762.367 0.037811992 0.222686458 5.49E-05 4.26047897 -0.561651829 VNQQPNTSDKKS(ph)SPQK ddPTM_HeLa_A486_30min_R1 1 VNQQPNTSDKKSSPQK 16 2 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 VNQQPNTS(0.001)DKKS(0.5)S(0.5)PQK 113.54 6.79E-05 605370000 303160 222380 79252 261620 197590 340070 539540 489160 174880 717920 TRUE FALSE FALSE 281910.0495 204757.7989 109940.4968 609064.5815 172806.4197 298115.621 404541.3853 377788.9463 190038.7392 538148.1591 0.523852112 0.380485923 0.204294106 1.131778621 0.321113093 0.553965699 0.751728643 0.70201661 0.353134608 1 19.03764389 -14 0.144197115 2.465306273 0.411012914 0.21517664 0.254767849 218.9108744 1.907019954 93.25086524 1.43716119 1.00E-14 14 -2.054293359 VNQSALEAVTPS(ph)PSFQQR ddPTM_HeLa_A485_30min_R1 4 VNQSALEAVTPSPSFQQR 18 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 0 VNQSALEAVTPS(1)PSFQQR;VNQSALEAVT(0.001)PS(0.999)PSFQQR;VNQSALEAVT(0.001)PS(0.999)PSFQQR;VNQSALEAVT(0.204)PS(0.796)PSFQQR ;;; 333.01 1.41E-101 4105220000 1242732 1625470 1527160 1131149 1625890 1468380 1753930 1786050 1192628 1708640 TRUE FALSE FALSE 1519173.446 1815554.577 2092120.034 1192940.806 1464010.683 1545262.106 1379188.527 1348018.437 1431977.5 1282707.493 1.184349085 1.415408101 1.631018799 0.930017804 1.141344142 1.20468783 1.075216707 1.050916475 1.116371042 1 20.29076079 -5.268540107 24.99974287 1.084492799 1.410773608 0.61085875 0.122763054 369.8824586 1302256.207 0.034860729 0.052936021 5.39E-06 5.268540107 0.326280809 VNQSALEAVTPS(ph)PSFQQR ddPTM_HeLa_A486_30min_R1 4 VNQSALEAVTPSPSFQQR 18 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 0 VNQSALEAVTPS(1)PSFQQR;VNQSALEAVTPS(1)PSFQQR;VNQSALEAVT(0.026)PS(0.972)PS(0.002)FQQR;VNQSALEAVT(0.163)PS(0.833)PS(0.004)FQQR ;;; 246.49 1.25E-45 3586600000 1492340 1737550 1540410 517018 1925380 1518920 1616210 1743200 1482800 1660370 TRUE FALSE FALSE 1387734.672 1599860.21 2136898.006 1203644.033 1683880.887 1331531.094 1211817.163 1346311.414 1611330.298 1244602.545 1.115002278 1.285438646 1.716932056 0.967091091 1.352946685 1.069844425 0.973657951 1.081719959 1.29465451 1 20.24725367 -5.302378978 24.99990372 1.11241305 1.363756681 0.304811699 0.184275939 636.6817221 388790.4326 0.05212422 0.077313605 4.98E-06 5.302378978 0.251343631 VNS(ph)GDTEVGSSLLR ddPTM_HeLa_A485_30min_R1 6 VNSGDTEVGSSLLR 14 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 VNS(0.996)GDT(0.004)EVGSSLLR;VNS(0.99)GDT(0.01)EVGSSLLR;VNS(0.972)GDT(0.028)EVGSSLLR;VNS(1)GDTEVGSSLLR;VNS(0.996)GDT(0.004)EVGSSLLR;VNS(0.95)GDT(0.05)EVGSSLLR ;;;;; 273.43 7.64E-49 1270500000 1277828 1050141 950801 1926900 1436008 1095619 1512064 1205948 1053667 2622970 TRUE FALSE FALSE 1562076.43 1172945.855 1302541.856 2032161.668 1293034.001 1152983.917 1188999.174 910187.3621 1265128.302 1969111.851 0.793289842 0.595672538 0.661486982 1.032019419 0.656658483 0.585535005 0.603825107 0.462232433 0.642486764 1 20.90911363 -3.977929273 16.28967325 0.679719091 1.053175199 0.02400501 0.17260957 95920360.44 1772139733 0.043871068 911620854.2 0.000105213 3.977929273 0.373456107 VNS(ph)GDTEVGSSLLR ddPTM_HeLa_A486_30min_R1 5 VNSGDTEVGSSLLR 14 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 VNS(0.934)GDT(0.066)EVGSSLLR;VNS(0.985)GDT(0.015)EVGSSLLR;VNS(0.922)GDT(0.078)EVGSSLLR;VNS(0.996)GDT(0.004)EVGSSLLR;VNS(0.933)GDT(0.067)EVGSSLLR ;;;; 265.6 5.19E-42 1403800000 1337100 1369110 824866 594648 1316199 1519250 1758430 1555950 1152129 1861430 TRUE FALSE FALSE 1243376.195 1260616.737 1144276.206 1384370.596 1151109.048 1331820.382 1318452.215 1201694.151 1251996.469 1395315.812 0.891107364 0.903463378 0.820084024 0.992155743 0.82498101 0.954493864 0.944913118 0.861234525 0.897285373 1 20.41216026 VNS(ph)NGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 1 VNSNGKESPGSSEFFQEAVSHGK 23 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 0 VNS(1)NGKES(0.784)PGS(0.036)S(0.18)EFFQEAVSHGK 186.35 1.76E-20 554500000 364350 317660 98254 244620 220470 418470 602340 490940 249430 770200 TRUE FALSE FALSE 338810.9465 292487.4647 136300.5801 569487.7224 192816.5968 366843.4261 451628.1611 379163.6791 271050.7932 577336.9068 0.586851356 0.506614875 0.236084994 0.986404499 0.333975872 0.635406158 0.782261026 0.656745957 0.469484611 1 19.13905393 -14 0.169829874 2.600191283 0.482653638 0.28166523 0.202770058 173.4250645 1.634059603 93.8208126 0.719903952 1.00E-14 14 -2.117537645 VNS(ph)NGKESPGS(ph)SEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 1 VNSNGKESPGSSEFFQEAVSHGK 23 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 2 0 VNS(0.969)NGKES(0.325)PGS(0.542)S(0.162)EFFQEAVS(0.002)HGK 40.456 0.0090356 0 162360 154340 58074 125690 134210 223170 292280 237210 115120 354370 TRUE FALSE FALSE 150979.4024 142109.5363 80561.80808 292612.672 117376.1303 195637.5544 219148.4526 183202.4613 125098.6943 265633.4454 0.568374973 0.534983598 0.30328187 1.101565624 0.441872559 0.736494435 0.825003238 0.689681455 0.470944817 1 18.01907728 -14 0.099293865 2.004322743 0.414050226 0.20285097 0.214764773 318.4952746 2.15123759 68.66038756 3.690765067 1.00E-14 14 -1.590272517 VNS(ph)PGTLAR ddPTM_HeLa_A485_30min_R1 3 VNSPGTLAR 9 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2 A0A087WVP4 SMTN Smoothelin 1 0 VNS(0.879)PGT(0.121)LAR;VNS(1)PGTLAR;VNS(0.982)PGT(0.018)LAR ;; 175.22 2.50E-06 475370000 964310 928250 765920 1250100 1417770 956130 1304100 1415960 851620 1572710 TRUE FALSE FALSE 1178817.433 1036800.763 1049265.681 1318389.798 1276611.841 1006191.488 1025468.381 1068693.59 1022532.322 1180662.341 0.998437396 0.878151803 0.888709366 1.116652706 1.08126752 0.852226292 0.868553477 0.90516446 0.866066688 1 20.17116499 -6.284159207 24.94004839 0.890609417 0.987398361 0.25964268 0.078774695 1189.37681 1305600.493 0.030110195 0.02657193 5.20E-07 6.284159207 0.096788944 VNS(ph)PGTLAR ddPTM_HeLa_A486_30min_R1 3 VNSPGTLAR 9 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2 A0A087WVP4 SMTN Smoothelin 1 0 VNS(0.986)PGT(0.014)LAR;VNS(1)PGTLAR;VNS(0.999)PGT(0.001)LAR ;; 132.17 0.00036095 481280000 625260 652310 421590 290214 708490 713800 865550 816580 518600 898490 TRUE FALSE FALSE 581432.5028 600618.5799 584840.9386 675632.8586 619624.5778 625738.6134 648980.2351 630662.5598 563552.6656 673502.2558 0.863297038 0.891784066 0.868357802 1.003163468 0.920003716 0.929081689 0.963590292 0.936392647 0.836749485 1 19.36132325 -5.205711563 24.99992578 0.938167291 0.876210012 0.31873813 0.044571584 380.1375202 170531.6533 0.011823506 0.020478901 6.23E-06 5.205711563 -0.061957279 VNSNGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 1 VNSNGKESPGSSEFFQEAVSHGK 23 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 VNS(0.288)NGKES(0.446)PGS(0.133)S(0.133)EFFQEAVSHGK 56.573 0.016592 791050000 204450 185540 187180 304480 266150 239420 340020 318070 222270 370280 TRUE FALSE FALSE 249929.1972 207237.289 256425.6712 321112.9714 239651.1715 251955.661 267371.9493 240062.8338 266877.5502 277976.0105 0.899103476 0.745522208 0.922474104 1.155182315 0.86212897 0.906393543 0.961852603 0.863609897 0.960074036 1 18.08460086 -4.942589533 9.079179421 0.953756663 0.82442782 0.281094422 0.08566758 0.413833178 60.66533441 0.022553282 0.047090133 1.14E-05 4.942589533 -0.129328843 VNSNGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_A486_30min_R1 1 VNSNGKESPGSSEFFQEAVSHGK 23 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 VNS(0.004)NGKES(0.995)PGS(0.001)SEFFQEAVSHGK 226.28 1.79E-38 1373000000 1189900 1215100 518920 542340 1013600 1725400 1898000 1683000 1061800 1857500 TRUE FALSE FALSE 1106494.155 1118811.051 719859.7212 1262594.928 886464.8366 1512537.691 1423100.325 1299817.64 1153837.679 1392369.91 0.794684047 0.803530041 0.517003216 0.906795615 0.636659002 1.086304494 1.022070583 0.933528964 0.828686164 1 20.40911111 -6.259043759 24.99999197 0.972960636 0.733519145 0.524208856 0.115450506 180.1577091 1880078.196 0.038757097 0.037019491 5.51E-07 6.259043759 -0.239441491 VNSNGKESPGS(ph)SEFFQEAVSHGK ddPTM_HeLa_A485_30min_R1 1 VNSNGKESPGSSEFFQEAVSHGK 23 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 VNSNGKES(0.035)PGS(0.483)S(0.483)EFFQEAVSHGK 117.73 4.96E-05 712800000 360530 236220 167940 527610 369940 346510 541660 489930 307910 744970 TRUE FALSE FALSE 440728.6547 263843.8742 230067.9946 556431.9983 333107.4747 364652.7278 425929.916 369773.8993 369704.7127 559262.6892 0.788053026 0.471770921 0.411377335 0.994938531 0.595618984 0.652024058 0.761591868 0.661181063 0.661057353 1 19.09316656 -14 0.210687543 2.610258052 0.615877034 0.295158543 0.154838564 189.6418112 1.891251833 129.1570676 0.332580454 1.00E-14 14 -1.994381018 VNSNS(ph)LDLPSSSDTTHASK ddPTM_HeLa_A486_30min_R1 1 VNSNSLDLPSSSDTTHASK 19 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VNS(0.163)NS(0.837)LDLPSSSDTTHASK 125.11 4.13E-06 224190000 171280 178000 90030 106570 145280 237520 287470 291000 195760 266330 TRUE FALSE FALSE 159274.1565 163894.6317 124892.0271 248100.3457 127057.6277 208217.1973 215541.9655 224745.6525 212728.6344 199639.2345 0.797809894 0.820954018 0.625588589 1.242743424 0.63643616 1.04296732 1.079657343 1.125758937 1.065565268 1 17.60703575 -6.024108359 0.739909641 1.090393958 0.776447395 0.301102423 0.167385693 0.854533148 1.04139563 0.106689642 0.136895275 9.46E-07 6.024108359 -0.313946562 VNVGAGSHPNK ddPTM_HeLa_A485_30min_R1 2 VNVGAGSHPNK 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 105.46 0.0020178 194749000 130566 128618 131475 165035 197099 158665 179293 166501 152427 245900 FALSE FALSE TRUE 159609.9563 143658.7563 180113.0736 174050.4442 177475.1315 166972.4541 140985.5859 125666.3687 183017.7008 184601.6555 0.864618228 0.778209469 0.97568504 0.942843355 0.961395124 0.904501391 0.763728719 0.680743455 0.991419607 1 17.49405597 -6.638918753 13.45051405 0.832384253 0.906539325 0.019318363 0.104129795 1.364815471 153.9005775 0.039986607 0.030968991 2.30E-07 6.638918753 0.074155073 VNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_HeLa_A485_30min_R1 4 VNVTVDYIRPASPATETVPAFSER 24 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 VNVTVDYIRPAS(0.999)PAT(0.001)ETVPAFSER;VNVTVDYIRPAS(0.997)PAT(0.003)ETVPAFSER;VNVTVDYIRPAS(0.989)PAT(0.008)ET(0.003)VPAFSER;VNVTVDYIRPAS(0.996)PAT(0.004)ET(0.001)VPAFSER ;;; 196.01 6.16E-22 998430000 576753 689920 740110 675470 904350 646540 798790 813220 672132 928050 TRUE FALSE FALSE 705049.7151 770600.1425 1013907.488 712369.2157 814309.7386 680391.8347 628121.991 613776.5199 807022.7272 696704.2145 1.011978542 1.106064994 1.455291164 1.022484436 1.168802659 0.976586363 0.901561922 0.880971447 1.158343398 1 19.41018676 -6.264810531 19.92297831 0.970932482 1.159872636 0.28223026 0.134126917 22.43907347 132606.5476 0.046821308 0.043159126 5.43E-07 6.264810531 0.188940155 VNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_HeLa_A486_30min_R1 1 VNVTVDYIRPASPATETVPAFSER 24 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 VNVTVDYIRPAS(0.942)PAT(0.056)ET(0.002)VPAFSER 192.5 2.94E-21 260160000 180570 181870 164410 69668 211370 194620 218860 202130 201610 183210 TRUE FALSE FALSE 167912.9755 167457.9588 228073.9551 162190.6248 184858.0037 170609.7632 164098.9131 156109.4115 219085.7171 137333.0235 1.222670055 1.21935682 1.660736429 1.18100236 1.346056461 1.242306903 1.194897694 1.13672158 1.595287947 1 17.06731906 -5.886141868 1.77605343 1.24355603 1.34417302 0.050952559 0.18816936 1.251641373 8.10958218 0.068071218 0.08179692 1.30E-06 5.886141868 0.10061699 VNVVSMLQEFWESK(ac)QQQK ddPTM_HeLa_A486_30min_R1 1 VNVVSMLQEFWESKQQQK 18 1 D6RID5 D6RID5 LIX1 0 1 VNVVSMLQEFWESK(1)QQQK 41.554 0.035134 19148000 27540 23760 16859 14223 25755 30620 44159 44296 21821 56380 FALSE TRUE FALSE 25609.58822 21877.17107 23387.2563 33111.86279 22524.56774 26842.41572 33109.95113 34210.76777 23712.46185 42262.08103 0.605970828 0.517654847 0.553386292 0.783488697 0.532973465 0.635141836 0.783443463 0.809490847 0.561081264 1 15.36707619 -13.99999999 0.11141814 2.142892944 0.446938887 0.561425886 0.099598901 121.7780116 0.897490481 31.66085939 1.209877529 1.00E-14 13.99999999 -1.695954056 VPAAFPTKVPVPGPGS(ph)GGNGPER ddPTM_HeLa_A485_30min_R1 2 VPAAFPTKVPVPGPGSGGNGPER 23 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 VPAAFPTKVPVPGPGS(1)GGNGPER;VPAAFPTKVPVPGPGS(1)GGNGPER ; 150.62 6.20E-10 2716100000 1060120 1592220 1313930 951450 1494550 1598720 1892300 1884400 1217810 1386520 TRUE FALSE FALSE 1295940.037 1778416.279 1800007.384 1003425.304 1345747.354 1682426.507 1487994.646 1422247.945 1462213.297 1040886.081 1.245035418 1.708559958 1.729302963 0.964010685 1.2928863 1.616340671 1.429546108 1.366381943 1.404777452 1 19.98938075 -12.14015676 0.310190379 3.20E-11 1.447892748 0.247911332 0.21804257 123.6549881 3.249504939 80.58478227 0.222065718 7.24E-13 12.14015676 1.447892748 VPAAFPTKVPVPGPGS(ph)GGNGPER ddPTM_HeLa_A486_30min_R1 2 VPAAFPTKVPVPGPGSGGNGPER 23 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 VPAAFPTKVPVPGPGS(1)GGNGPER;VPAAFPTKVPVPGPGS(1)GGNGPER ; 155.14 3.19E-10 1757680000 1033360 905140 659230 278509 966320 762330 880810 920800 705920 1013850 TRUE FALSE FALSE 960926.8003 833413.4099 914501.5108 648383.0271 845115.135 668281.4754 660422.0217 711153.9409 767109.714 759975.3609 1.264418361 1.096632145 1.203330473 0.853163221 1.112029651 0.879346239 0.869004517 0.935759207 1.009387611 1 19.53559312 -5.250301516 24.99182483 0.948842123 1.178977528 0.633123922 0.08253264 473.1974109 1061787.504 0.021981964 0.037629706 5.62E-06 5.250301516 0.230135406 VPADTEVVCAPPTAYIDFAR ddPTM_HeLa_A485_30min_R1 1 VPADTEVVCAPPTAYIDFAR 20 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 0 0 116.84 1.58E-05 20734000 2703.7 3960.6 4167.8 3640.8 5584.4 3331.9 5498 4543.4 3647.7 6000.6 FALSE FALSE TRUE 3305.128737 4423.757717 5709.642657 3839.687685 5028.397528 3506.353132 4323.307385 3429.124026 4379.759931 4504.760853 0.733696825 0.982018327 1.267468539 0.852362159 1.116240727 0.778366099 0.959719623 0.761222213 0.972251375 1 12.1372348 -6.265571336 24.99287875 0.883476241 0.997622707 0.087663387 0.152037519 819.9146545 4959380.893 0.051736693 0.047269255 5.43E-07 6.265571336 0.114146466 VPAFLDLFMQSLFKPGAR ddPTM_HeLa_A486_30min_R1 1 VPAFLDLFMQSLFKPGAR 18 1 X6RLT1;H0UI80;Q8IXH7-4;Q8IXH7 X6RLT1 NELFCD;TH1L Negative elongation factor C/D 0 0 152.37 3.07E-09 16356000 27758 34170 28781 14114 37743 35292 45628 40926 35579 45413 FALSE FALSE TRUE 25812.30754 31462.24475 39925.77398 32858.10528 33008.921 30938.03186 34211.3918 31608.04321 38663.01637 34041.28921 0.758264688 0.924237756 1.172863158 0.965242682 0.969673058 0.908838431 1.004996949 0.928520745 1.135768276 1 15.05499806 -4.364241631 3.851932984 1.003430604 0.755638337 0.472995874 0.080413385 0.199030271 4.738179027 0.020193796 0.108893596 4.32E-05 4.364241631 -0.247792267 VPAKLS(ph)PMK ddPTM_HeLa_A485_30min_R1 3 VPAKLSPMK 9 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 VPAKLS(1)PMK;VPAKLS(1)PMK;VPAKLS(1)PMK ;; 98.105 0.0010872 5801400000 13344000 7702270 5836220 24162500 12823300 10187710 18824200 12778600 9744320 29986700 TRUE FALSE FALSE 16312326.76 8602983.476 7995280.643 25482436.19 11546567.23 10721122.74 14802255.89 9644628.314 11699915.64 22511567.55 0.724619764 0.382158348 0.355163212 1.131970758 0.512917068 0.476249498 0.657539989 0.428429886 0.519729051 1 24.42416318 -10.44364568 3.12814603 1.007704157 0.573845926 0.258354191 0.215201971 107893131.9 131356215.1 7324183.847 0.053924935 3.60E-11 10.44364568 -0.433858231 VPAKLS(ph)PMK ddPTM_HeLa_A486_30min_R1 3 VPAKLSPMK 9 1 P35658-4;P35658-3;A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3 P35658-4 NUP214 Nuclear pore complex protein Nup214 1 0 VPAKLS(1)PMK;VPAKLS(1)PMK;VPAKLS(1)PMK ;; 110.38 0.000448 11903580000 22110700 21456300 8013720 13317390 17834500 27983700 36357000 32886700 16594700 39655200 TRUE FALSE FALSE 20560854.11 19756024.65 11116847 31003556.94 15597530.71 24531355.61 27260094.05 25399116.32 18033141.96 29725279.81 0.691695898 0.664620309 0.373986286 1.043003031 0.524722755 0.825269123 0.917067702 0.854461808 0.606660125 1 24.82518705 -5.673193341 0.974495246 0.8286641 0.610845021 0.17366779 0.185453201 1.054778425 2.121535405 0.082873052 0.145074275 2.12E-06 5.673193341 -0.217819079 VPAPFS(ph)PPPSKPR ddPTM_HeLa_A485_30min_R1 2 VPAPFSPPPSKPR 13 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VPAPFS(0.998)PPPS(0.002)KPR;VPAPFS(0.987)PPPS(0.013)KPR ; 89.484 0.00080841 2217800000 2033000 2171200 1730360 1967700 2278900 2203100 2555000 2626000 1901460 2864600 TRUE FALSE FALSE 2485233.836 2425102.953 2370492.17 2075190.469 2052004.714 2318450.909 2009103.378 1981969.383 2283065.581 2150507.939 1.155649691 1.127688445 1.10229408 0.964976893 0.954195368 1.07809456 0.934245971 0.921628489 1.061640155 1 21.03624603 -5.141798559 3.700990437 0.984701213 1.137145936 0.643595408 0.048374772 0.148099751 3.6259535 0.013575376 0.025225073 7.21E-06 5.141798559 0.152444723 VPAPFS(ph)PPPSKPR ddPTM_HeLa_A486_30min_R1 2 VPAPFSPPPSKPR 13 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VPAPFS(1)PPPSKPR;VPAPFS(0.997)PPPS(0.003)KPR ; 126.63 1.36E-05 2090300000 2456400 2511800 1838580 781480 2629800 2224470 2322200 2307900 1967800 2685700 TRUE FALSE FALSE 2284219.045 2312755.82 2550527.415 1819324.934 2299945.962 1950037.508 1741160.998 1782441.551 2138370.488 2013183.239 1.13463047 1.148805422 1.266912701 0.903705584 1.142442435 0.968633888 0.864879542 0.885384657 1.062183733 1 20.94104706 -5.596283297 1.102143774 0.949764095 1.177417705 0.428890591 0.096501817 0.474317399 1.19653886 0.039559904 0.071988145 2.53E-06 5.596283297 0.227653611 VPAS(ph)PLPGLER ddPTM_HeLa_A485_30min_R1 6 VPASPLPGLER 11 0 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER ;;;;; 139.52 8.34E-06 7372250000 1212540 1710720 1694840 1193730 1791300 1664210 1856070 1954710 1506070 1682220 TRUE FALSE FALSE 1482265.34 1910773.823 2321831.844 1258940.447 1612951.882 1751345.462 1459505.482 1475314.308 1808324.435 1262873.513 1.173724308 1.513036581 1.838530795 0.996885622 1.277207785 1.386794041 1.155702029 1.168220168 1.431912552 1 20.26827872 -5.275057289 24.96161717 1.218253788 1.508891198 0.326767897 0.200400231 916.9741388 1680810.464 0.056266724 0.083968183 5.31E-06 5.275057289 0.290637409 VPAS(ph)PLPGLER ddPTM_HeLa_A486_30min_R1 6 VPASPLPGLER 11 0 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER ;;;;; 159.44 1.08E-07 7228210000 1521310 1901040 1864440 558584 2114140 1571130 1963430 1768370 1706710 1619030 TRUE FALSE FALSE 1414674.025 1750394.667 2586401.099 1300411.781 1848964.848 1377299.955 1472159.047 1365750.754 1854648.997 1213614.35 1.165670153 1.442298921 2.131155667 1.07151978 1.523519269 1.13487448 1.213036948 1.125358113 1.528202923 1 20.21087862 VPASETS(ph)PGPPPMGPPPPSSK ddPTM_HeLa_A485_30min_R1 2 VPASETSPGPPPMGPPPPSSK 21 0 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 VPAS(0.001)ET(0.031)S(0.968)PGPPPMGPPPPSSK;VPAS(0.001)ET(0.104)S(0.895)PGPPPMGPPPPSSK ; 161.35 1.96E-13 535400000 393690 429260 367000 424930 532970 501490 592500 629790 447480 601730 TRUE FALSE FALSE 481264.9823 479458.2229 502768.5721 448142.8499 479905.6354 527747.2409 465907.5347 475333.015 537285.1315 451729.785 1.065382444 1.061382797 1.112985216 0.992059556 1.06237324 1.168280814 1.031385466 1.052250772 1.189394964 1 18.78510052 -6.031768249 24.97141692 1.091012569 1.057764395 0.055543954 0.0603558 2012.921232 1582249.966 0.019417845 0.019435608 9.29E-07 6.031768249 -0.033248174 VPASETS(ph)PGPPPMGPPPPSSK ddPTM_HeLa_A486_30min_R1 2 VPASETSPGPPPMGPPPPSSK 21 0 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 VPASETS(1)PGPPPMGPPPPSSK;VPASETS(1)PGPPPMGPPPPSSK ; 341.36 8.10E-115 603940000 304900 332690 218672 96869 355810 318670 365910 351640 250140 348530 TRUE FALSE FALSE 283528.0845 306326.4328 303347.6546 225515.9275 311180.992 279355.7354 274355.4478 271579.2482 271822.3366 261255.8195 1.08525079 1.172515251 1.161113484 0.863199633 1.191096882 1.069280432 1.050141001 1.039514637 1.040445098 1 17.99510365 -1.00000018 0.142545163 0.989495016 1.494860734 0.132066982 0.085129154 154.2671808 1.461971834 0.350632811 15.94561542 0.099999959 1.00000018 0.505365718 VPCNVEGIS(ph)PELEK ddPTM_HeLa_A485_30min_R1 4 VPCNVEGISPELEK 14 0 Q86VQ1;H7C2L5;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK ;;; 170.11 3.92E-12 2623390000 1484370 1512700 1377820 2118880 2178700 1670230 2405310 2346280 1486540 2717090 TRUE FALSE FALSE 1814562.985 1689597.106 1887532.954 2234629.049 1961780.978 1757680.66 1891395.869 1770851.151 1784874.943 2039769.467 0.889592189 0.828327482 0.925365824 1.095530198 0.961766028 0.861705545 0.927259624 0.868162398 0.875037582 1 20.95997468 -4.112580168 0.004672009 1.821267626 3.00E-07 0.0357647 0.073721854 215092.8523 150.1267788 28232.8939 30317.17493 7.72E-05 4.112580168 -1.821267326 VPCNVEGIS(ph)PELEK ddPTM_HeLa_A486_30min_R1 4 VPCNVEGISPELEK 14 0 Q86VQ1;H7C2L5;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK ;;; 243.86 1.93E-35 2263892000 1567500 1677670 1019137 597295 1649477 1655462 2085142 1979030 1322775 2095341 TRUE FALSE FALSE 1457626.345 1544725.319 1413774.14 1390532.946 1442584.214 1451227.93 1563417.417 1528448.071 1437434.202 1570653.975 0.928037854 0.983491809 0.900118143 0.885320998 0.918460868 0.923964128 0.995392647 0.973128452 0.915181972 1 20.58293395 -6.735199545 23.24745424 0.968686449 0.92298055 0.347203055 0.031977704 127.8226159 113245.2078 0.012850723 0.009949441 1.84E-07 6.735199545 -0.045705899 VPDEEENEES(ph)DNEKETEK ddPTM_HeLa_A485_30min_R1 2 VPDEEENEESDNEKETEK 18 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 VPDEEENEES(1)DNEKETEK;VPDEEENEES(1)DNEKETEK ; 186.82 3.12E-18 3185400000 1386580 653110 441730 3572300 1006780 674940 1497460 745760 766410 4653300 TRUE FALSE FALSE 1695019.937 729485.5332 605144.3089 3767445.703 906541.4482 710278.8147 1177515.438 562861.1907 920221.4571 3493317.948 0.485217768 0.208823114 0.173229096 1.078472031 0.259507283 0.203324984 0.337076515 0.161125096 0.263423333 1 21.73616653 -10.51088233 4.363612169 1.004763884 0.350945758 0.359373024 0.259449959 0.012370971 0.001386662 0.258452316 0.062371426 3.08E-11 10.51088233 -0.653818126 VPDEEENEES(ph)DNEKETEK ddPTM_HeLa_A486_30min_R1 4 VPDEEENEESDNEKETEK 18 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 VPDEEENEES(0.999)DNEKET(0.001)EK;VPDEEENEES(1)DNEKETEK;VPDEEENEES(1)DNEKETEK;VPDEEENEES(1)DNEKETEK ;;; 212.94 2.86E-26 4964960000 1597589 1844470 479981 1164496 840135 2387240 2869590 2034070 1505220 3969100 TRUE FALSE FALSE 1485606.261 1698307.48 665842.4975 2711005.538 734757.4344 2092726.6 2151588.231 1570956.664 1635693.682 2975211.525 0.499327946 0.570819071 0.223796692 0.911197579 0.24695973 0.703387501 0.723171516 0.528015118 0.549773913 1 21.50456081 -14 0.193956091 2.955537858 0.47515676 0.333897234 0.194403667 158.1167688 1.554137337 119.6177743 0.480348928 1.00E-14 14 -2.480381097 VPDS(ph)PENELK ddPTM_HeLa_A486_30min_R1 1 VPDSPENELK 10 0 A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35 A0A0U1RR46 INADL InaD-like protein 1 0 VPDS(1)PENELK 101.72 0.0014352 84114000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VPEASSEPFDT(ph)SSPQAGR ddPTM_HeLa_A485_30min_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 VPEASSEPFDT(0.463)S(0.463)S(0.074)PQAGR 68.173 0.0073933 0 38555 51328 46706 52734 73213 49513 61864 63716 36184 67451 TRUE FALSE FALSE 47131.42674 57330.36311 63984.493 55614.72489 65923.65665 52105.42412 48646.25102 48089.5511 43445.7969 50636.70704 0.930775903 1.132189798 1.263599012 1.098308483 1.301894624 1.029004988 0.96069144 0.949697441 0.85799017 1 15.62789597 -6.524111761 4.681061376 0.942308948 1.150668281 0.482573346 0.099195124 0.16771388 9.843563568 0.038219783 0.030858629 2.99E-07 6.524111761 0.208359333 VPEASSEPFDTSS(ph)PQAGR ddPTM_HeLa_A485_30min_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 VPEASSEPFDT(0.002)S(0.46)S(0.538)PQAGR 127.32 1.08E-05 163250000 88619 99048 85963 87774 108410 85825 113780 111030 85271 113350 TRUE FALSE FALSE 108331.9908 110630.802 117764.2909 92568.87136 97616.31975 90318.66429 89469.9735 83799.71841 102384.1075 85093.93105 1.273087158 1.300102142 1.383932902 1.087843401 1.147159598 1.061399599 1.051426023 0.984790776 1.203189302 1 16.37676862 -5.273808611 23.50496352 1.077175055 1.317146865 0.741766571 0.065563802 159.4088954 302920.9134 0.018172786 0.027211121 5.32E-06 5.273808611 0.23997181 VPEASSEPFDTSS(ph)PQAGR ddPTM_HeLa_A486_30min_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 VPEASSEPFDTS(0.045)S(0.955)PQAGR 179.9 1.08E-17 205120000 199110 219460 185350 74262 255370 225160 259010 243950 185030 228850 TRUE FALSE FALSE 185153.4172 202069.1903 257122.4838 172885.689 223339.1134 197382.0485 194202.9585 188407.9104 201068.5494 171544.4704 1.079331888 1.177940564 1.498867805 1.007818489 1.301931288 1.150617376 1.132085214 1.098303606 1.172107436 1 17.3882231 -7.966080638 0.430624138 0.996808585 1.223710628 0.177665815 0.126744523 2.084953464 1.016876533 0.173288793 0.091848807 1.08E-08 7.966080638 0.226902043 VPEPEGQTS(ph)PK ddPTM_HeLa_A485_30min_R1 1 VPEPEGQTSPK 11 0 Q504Q3-2;Q504Q3-3;Q504Q3 Q504Q3-2 PAN2 PAB-dependent poly(A)-specific ribonuclease subunit PAN2 1 0 VPEPEGQT(0.2)S(0.8)PK 93.011 0.0009531 0 157130 110510 97399 237840 169790 134970 222700 201030 145360 311700 TRUE FALSE FALSE 192083.0264 123433.1832 133430.9432 250832.597 152885.1114 142036.8205 175118.3257 151727.0773 174532.4187 233998.9264 0.8208714 0.527494656 0.570220322 1.071939093 0.653358175 0.606997744 0.748372347 0.648409288 0.745868459 1 17.83614239 -8.040556153 19.21112001 1.000000005 0.703613972 0.26321599 0.146675079 439.8862645 208372.483 0.142722544 0.036850789 9.11E-09 8.040556153 -0.296386034 VPFAPGPS(ph)PPPLLGNMDQER ddPTM_HeLa_A485_30min_R1 1 VPFAPGPSPPPLLGNMDQER 20 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 VPFAPGPS(1)PPPLLGNMDQER 70.942 0.004722 17988000 13740 14441 22032 17776 16646 15259 14892 10314 17766 28379 TRUE FALSE FALSE 16796.4156 16129.74933 30182.55363 18747.05787 14988.66579 16057.93765 11710.20254 7784.475328 21331.47324 21304.63758 0.788392459 0.757100386 1.416712841 0.879951973 0.70354005 0.753729679 0.549655093 0.36538877 1.001259616 1 14.37887989 -5.662412269 4.288167938 0.689183438 0.989836717 0.172223002 0.245409097 0.327205162 10.79778409 0.075049116 0.097404175 2.18E-06 5.662412269 0.300653279 VPGEDGTLPPT(ph)QGSPLR ddPTM_HeLa_A486_30min_R1 1 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VPGEDGT(0.003)LPPT(0.499)QGS(0.499)PLR 70.784 0.0065759 0 316010 323360 238700 124280 283330 306760 377020 348390 308890 358600 TRUE FALSE FALSE 293859.3309 297735.7759 331131.0326 289330.1208 247792.1095 268915.0701 282685.6083 269069.2023 335664.8339 268804.2259 1.093209491 1.107630563 1.231866915 1.076360016 0.921831153 1.00041236 1.051641236 1.00098576 1.248733471 1 18.03619629 -5.515512512 24.94311535 1.032820113 1.142831542 0.23515595 0.08605868 475.8039867 1611142.784 0.02522044 0.033990197 3.05E-06 5.515512512 0.110011429 VPGEDGTLPPTQGS(ph)PLR ddPTM_HeLa_A485_30min_R1 4 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VPGEDGTLPPT(0.084)QGS(0.916)PLR;VPGEDGTLPPT(0.059)QGS(0.941)PLR;VPGEDGTLPPTQGS(1)PLR;VPGEDGT(0.004)LPPT(0.032)QGS(0.964)PLR ;;; 199.77 2.16E-18 790350000 729005 619717 483413 633438 1040890 884060 1299610 1354180 756885 978200 TRUE FALSE FALSE 891169.6472 692187.5123 662247.5852 668041.114 937255.3368 930348.0146 1021937.707 1022065.232 908784.8769 734352.7424 1.213544385 0.942581776 0.901811278 0.909700578 1.276301269 1.266895268 1.391616927 1.391790583 1.237531808 1 19.48611369 -5.771250128 24.72641084 1.287135594 0.98195051 0.49221041 0.131958873 130.9092891 329934.7588 0.040290735 0.04625123 1.69E-06 5.771250128 -0.305185083 VPGEDGTLPPTQGS(ph)PLR ddPTM_HeLa_A486_30min_R1 3 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VPGEDGTLPPT(0.092)QGS(0.908)PLR;VPGEDGTLPPTQGS(1)PLR;VPGEDGTLPPT(0.003)QGS(0.997)PLR ;; 201.9 4.50E-25 737346000 358828 371774 317322 126466 441301 366234 427246 420799 348074 398210 TRUE FALSE FALSE 333676.0102 342313.2743 440197.5766 294419.2392 385948.9136 321051.7727 320344.5319 324992.2537 378245.3346 298495.6241 1.117858968 1.14679495 1.474720368 0.986343569 1.292980139 1.075566095 1.073196744 1.08876723 1.267172126 1 18.18735026 -6.286328769 24.72291761 1.104754405 1.203552953 0.128470344 0.133690044 1544.475432 1534139.217 0.045944127 0.040536497 5.17E-07 6.286328769 0.098798549 VPGGGEQPAQPNGWQYHS(ph)PSRPGSTAFPSQDGETGGHRR ddPTM_HeLa_A486_30min_R1 2 VPGGGEQPAQPNGWQYHSPSRPGSTAFPSQDGETGGHRR 39 2 Q5VTI5;A0A1B0GUN5;Q9Y2H5;A0A5F9ZH45 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 VPGGGEQPAQPNGWQY(0.035)HS(0.921)PS(0.035)RPGS(0.005)T(0.002)AFPS(0.002)QDGET(0.002)GGHRR;VPGGGEQPAQPNGWQY(0.046)HS(0.855)PS(0.047)RPGS(0.012)T(0.012)AFPS(0.012)QDGET(0.015)GGHRR ; 76.659 0.00032093 578780000 81177 89831 47694 45386 79686 79015 107840 88014 64516 117912 TRUE FALSE FALSE 75486.9115 82712.4644 66162.39409 105660.9017 69691.03884 69266.93267 80857.29138 67975.13353 70108.29883 88386.06772 0.854058942 0.93580885 0.748561349 1.195447477 0.788484437 0.7836861 0.914819422 0.769070684 0.793205317 1 16.43153136 VPGGS(ph)PLGVSLVYSDKK ddPTM_HeLa_A485_30min_R1 1 VPGGSPLGVSLVYSDKK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 VPGGS(1)PLGVSLVYSDKK 110.75 9.08E-05 226920000 370120 298650 216200 406930 399150 379290 489500 433960 357920 658910 TRUE FALSE FALSE 452451.9171 333574.5196 296181.3768 429159.5555 359409.2245 399149.0379 384914.3262 327530.6296 429751.261 494655.8633 0.914680186 0.674356748 0.598762491 0.867592173 0.726584381 0.806922686 0.778145686 0.662138375 0.868788369 1 18.91606565 -8.007554546 6.180226486 0.999922287 0.751725647 0.426353076 0.090449267 0.113840614 22.87071976 0.085455894 0.022169088 9.83E-09 8.007554546 -0.24819664 VPGGS(ph)PLGVSLVYSDKK ddPTM_HeLa_A486_30min_R1 1 VPGGSPLGVSLVYSDKK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 VPGGS(0.998)PLGVS(0.002)LVYSDKK 113.51 7.30E-05 246870000 377160 383610 184360 164170 349340 436220 449690 475600 349660 525810 TRUE FALSE FALSE 350723.0317 353211.3465 255749.1293 382196.0567 305522.5197 382403.6116 337172.8057 367316.2623 379968.8103 394143.7536 0.889835316 0.896148533 0.64887272 0.969686956 0.775155047 0.970213553 0.855456423 0.931934755 0.964036108 1 18.58836239 -7.226268411 0.596393079 0.999538203 0.8324565 0.275277054 0.087102743 1.025924294 0.762074058 0.081164436 0.0467723 5.94E-08 7.226268411 -0.167081703 VPGGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 VPGGSPR 7 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 VPGGS(1)PR;VPGGS(1)PR;VPGGS(1)PR;VPGGS(1)PR ;;; 83.206 0.010025 9119610000 2617620 3903900 3499690 2860790 3431560 3454690 4276840 4806480 3531260 4176830 TRUE FALSE FALSE 3199900.538 4360427.146 4794370.965 3017067.714 3089901.837 3635572.226 3363058.195 3627683.244 4239951.491 3135623.15 1.02049908 1.390609438 1.529001011 0.962190789 0.985418748 1.159441697 1.072532647 1.156925775 1.352187839 1 21.58032075 -5.272648117 24.994728 1.101683812 1.321093814 0.277752557 0.158656938 941.3961875 2099247.308 0.045841281 0.068681415 5.34E-06 5.272648117 0.219410002 VPGGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 VPGGSPR 7 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 VPGGS(1)PR;VPGGS(1)PR;VPGGS(1)PR;VPGGS(1)PR ;;; 93.162 0.0061038 7113080000 2238570 2209500 2110380 693620 2399340 2368320 2395660 2273440 2308360 2991540 TRUE FALSE FALSE 2081657.803 2034411.173 2927575.654 1614782.414 2098392.404 2076140.758 1796240.529 1755827.341 2508450.503 2242438.912 0.928300785 0.90723148 1.305531954 0.72010096 0.935763464 0.925840497 0.801020942 0.782998962 1.118626015 1 21.09663725 -5.293130193 24.99838807 0.887444883 1.033042776 0.172946656 0.147429348 1130.43605 891709.5156 0.040702393 0.060377814 5.09E-06 5.293130193 0.145597893 VPGS(ph)SGHLHK ddPTM_HeLa_A486_30min_R1 1 VPGSSGHLHK 10 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 VPGS(0.695)S(0.305)GHLHK 134.13 4.04E-05 193200000 216700 238200 175730 35028 224420 214890 229370 203500 202930 173580 TRUE FALSE FALSE 201510.449 219324.1645 243777.3622 81546.95422 196271.151 188379.0566 171979.2 157167.4924 220520.1358 130114.4382 1.548717051 1.685625112 1.873561194 0.626732554 1.508450205 1.447795181 1.321753392 1.207917388 1.6948168 1 16.98942153 VPHNTPVDVTPCMS(ph)PLPHDSPLIEKPGLGQIEEENEGAGFK ddPTM_HeLa_A485_30min_R1 1 VPHNTPVDVTPCMSPLPHDSPLIEKPGLGQIEEENEGAGFK 41 1 B7Z5R6;Q14596-2;Q14596 B7Z5R6 NBR1 Next to BRCA1 gene 1 protein 1 0 VPHNTPVDVT(0.002)PCMS(0.822)PLPHDS(0.177)PLIEKPGLGQIEEENEGAGFK 93.961 2.50E-05 58810000 29157 49690 48299 12240 79771 33728 49164 47544 49409 25678 TRUE FALSE FALSE 35642.87406 55500.81325 66166.80999 12908.64021 71828.71915 35493.94593 38659.70977 35883.75945 59324.93309 19276.94717 1.84898956 2.879128773 3.432431983 0.669641313 3.726145977 1.841263848 2.005489221 1.861485594 3.07750665 1 14.23458897 -10.92467351 2.657711029 0.139193447 2.365936338 0.182870499 0.869575005 23431373.92 7873642.432 124571364.2 0.210194149 1.19E-11 10.92467351 2.226742891 VPHWYHFSCFWK ddPTM_HeLa_A485_30min_R1 4 VPHWYHFSCFWK 12 0 P09874;Q5VX84;Q5VX85 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ;;; ;;; 172.8 4.12E-07 200894700 253605.2 358720.5 382467 56915.5 411672.7 232579.7 285287.1 231141.1 188327.3 121404 FALSE FALSE TRUE 310018.8018 400669.742 523957.4591 60024.64965 370685.1205 244757.2135 224333.1805 174453.3828 226122.8617 91140.21708 3.401558738 4.396190341 5.748916076 0.658596738 4.067195936 2.685501761 2.461407134 1.914120774 2.481043703 1 16.47580019 -5.789830695 0.235199911 0.862222914 5.575929091 0.369716185 1.177151873 5.579391683 0.537612761 2.344102387 7.94881612 1.62E-06 5.789830695 4.713706177 VPHWYHFSCFWK ddPTM_HeLa_A486_30min_R1 3 VPHWYHFSCFWK 12 0 P09874;Q5VX84;Q5VX85 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ;; ;; 171.62 6.57E-07 215020800 310364.6 413747.6 397171 38815.96 482480.7 283143.2 295202.1 289144.8 298994.8 122677.7 FALSE FALSE TRUE 288609.6443 380960.7333 550966.2478 90365.51653 421963.4717 248211.8708 221339.4123 223312.841 324911.91 91958.40542 3.138480305 4.142750536 5.991472398 0.982678159 4.588634065 2.699175455 2.406951395 2.428411411 3.53324863 1 16.48869383 -7.848509221 0.159261505 2.25E-14 5.053173063 0.277090011 1.256443521 6.944905864 0.933431059 14.09980899 10.79826419 1.42E-08 7.848509221 5.053173063 VPKPEPIPEPKEPS(ph)PEK ddPTM_HeLa_A485_30min_R1 4 VPKPEPIPEPKEPSPEK 17 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK ;;; 124.2 9.01E-06 13301180000 2511550 1153870 887369 8932640 3173940 2018590 5333600 3611900 1850950 12273000 TRUE FALSE FALSE 3070235.633 1288805.059 1215643.72 9420607.505 2857931.389 2124280.251 4194032.788 2726075.862 2222418.687 9213566.968 0.33322986 0.139881228 0.131940618 1.022471268 0.310187292 0.230560027 0.455201856 0.295876274 0.241211541 1 23.13532836 -10.01493376 4.346735157 1.000032679 0.354935249 0.392590931 0.242073607 274877304.8 612392815.3 139477.3074 0.060935524 9.66E-11 10.01493376 -0.64509743 VPKPEPIPEPKEPS(ph)PEK ddPTM_HeLa_A486_30min_R1 5 VPKPEPIPEPKEPSPEK 17 2 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK ;;;; 174.7 8.05E-13 17827400000 4198140 3821190 1210643 7320150 3637370 7174150 12520060 10583820 3160300 13494160 TRUE FALSE FALSE 3903872.065 3518384.988 1679436.392 17041679.14 3181137.137 6289076.314 9387408.564 8174115.229 3434237.349 10115134.5 0.385943663 0.347833732 0.166032038 1.684770394 0.314492816 0.621749153 0.928055733 0.808107418 0.339514749 1 23.27001217 VPKPEPIPEPKEPS(ph)PEKNSK ddPTM_HeLa_A486_30min_R1 1 VPKPEPIPEPKEPSPEKNSK 20 3 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VPKPEPIPEPKEPS(0.996)PEKNS(0.004)K 89.979 0.00059438 1229400000 681980 467360 154200 1324400 636140 895120 2111400 2008900 342420 2133000 TRUE FALSE FALSE 634176.7237 430324.6915 213910.3696 3083270.131 556349.3894 784689.1953 1583105.388 1551517.324 372101.2413 1598882.917 0.396637376 0.26914084 0.133787388 1.92839019 0.347961307 0.490773394 0.990132155 0.970375822 0.23272576 1 20.60863287 VPLAPITDPQQLQLS(ph)PLK ddPTM_HeLa_A485_30min_R1 2 VPLAPITDPQQLQLSPLK 18 0 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 0 VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK ; 257.83 9.42E-58 2581200000 785330 746490 658700 1241680 970070 664580 1126030 804390 715280 1540070 TRUE FALSE FALSE 960023.9491 833785.5119 902380.5408 1309509.834 873486.4247 699376.3812 885444.4917 607112.0913 858830.1351 1156158.892 0.830356412 0.721168619 0.780498725 1.132638293 0.75550725 0.604913724 0.765850177 0.525111294 0.742830541 1 20.14090825 -5.989319166 24.99463816 0.698194389 0.861487427 0.141753294 0.153966175 356.1774483 833499.0976 0.047153839 0.053418089 1.02E-06 5.989319166 0.163293039 VPLAPITDPQQLQLS(ph)PLK ddPTM_HeLa_A486_30min_R1 2 VPLAPITDPQQLQLSPLK 18 0 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 0 VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK ; 260.44 7.55E-58 4425500000 1460750 1762930 1034800 818230 1389530 1759030 2000700 1730850 1203540 1916120 TRUE FALSE FALSE 1358358.968 1623229.006 1435502.273 1904880.791 1215242.191 1542018.763 1500103.699 1336773.239 1307863.816 1436311.08 0.945727557 1.130137495 0.999436886 1.326231356 0.846085648 1.073596649 1.044414208 0.930698967 0.910571418 1 20.45393682 -7.223363849 5.470564536 0.94017638 1.057248252 0.138417883 0.119558396 0.350933631 28.71506119 0.057280231 0.031517144 5.98E-08 7.223363849 0.117071872 VPLAPITDPQQLQLS(ph)PLKGLSLVDKENT(ph)PPALSGTR ddPTM_HeLa_A485_30min_R1 1 VPLAPITDPQQLQLSPLKGLSLVDKENTPPALSGTR 36 2 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 2 0 VPLAPITDPQQLQLS(0.999)PLKGLS(0.003)LVDKENT(0.995)PPALS(0.001)GT(0.001)R 163.77 1.38E-13 160000000 50954 53286 29928 63473 73599 79602 143660 162510 42633 98394 TRUE FALSE FALSE 62288.54151 59517.33417 40999.61261 66940.36927 66271.22514 83769.83763 112965.8674 122654.1677 51189.05205 73866.18661 0.843261909 0.80574532 0.555052514 0.906238326 0.897179456 1.134075569 1.529331249 1.660491401 0.692997086 1 16.17262648 -6.201102342 2.199035382 1.278293321 0.767708476 0.363313756 0.265632908 0.309808237 2.941989644 0.102124944 0.097967123 6.29E-07 6.201102342 -0.510584844 VPLAPITDPQQLQLS(ph)PLKGLSLVDKENTPPALSGTR ddPTM_HeLa_A486_30min_R1 2 VPLAPITDPQQLQLSPLKGLSLVDKENTPPALSGTR 36 2 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 0 VPLAPIT(0.001)DPQQLQLS(0.771)PLKGLS(0.199)LVDKENT(0.009)PPALS(0.01)GT(0.01)R;VPLAPITDPQQLQLS(1)PLKGLSLVDKENTPPALSGTR ; 173.83 3.75E-15 4350000000 121736 116291 71721 93147 164178 126424 192403 168160 82547 205359 TRUE FALSE FALSE 113202.935 107075.6776 99493.29195 216850.9234 143585.2643 110827.0923 144261.7344 129873.6389 89702.24042 153935.7697 0.73539071 0.695586723 0.646329908 1.408710424 0.932760882 0.719956723 0.937155377 0.843687202 0.582725123 1 17.23196898 VPLS(ph)PLSLLAGPADAR ddPTM_HeLa_A485_30min_R1 2 VPLSPLSLLAGPADAR 16 0 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 VPLS(0.996)PLS(0.004)LLAGPADAR;VPLS(0.996)PLS(0.004)LLAGPADAR ; 149.6 5.46E-08 151370000 78828 69050 76193 88970 110511 68818 75222 66562 78362 102291 TRUE FALSE FALSE 96363.01665 77124.79684 104379.9614 93830.20582 99508.13681 72421.20407 59150.20519 50237.56513 94088.53462 76791.73623 1.254861804 1.004337193 1.359260338 1.221878947 1.295818296 0.943085905 0.770267845 0.654205356 1.225242966 1 16.22866345 -6.355972588 5.003800844 0.88124338 1.221271985 0.463593262 0.164417449 0.194146683 7.872675602 0.058326846 0.051236952 4.41E-07 6.355972588 0.340028606 VPLS(ph)PLSLLAGPADAR ddPTM_HeLa_A486_30min_R1 1 VPLSPLSLLAGPADAR 16 0 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 VPLS(0.994)PLS(0.006)LLAGPADAR 93.909 0.00084631 97111000 28266 29440 23809 9206.5 26603 25276 24718 23679 20001 25534 TRUE FALSE FALSE 26284.69937 27107.06718 33028.48243 21433.19727 23266.20368 22157.70411 18533.29496 18287.80861 21734.70278 19140.1202 1.373277654 1.41624331 1.725615204 1.119804737 1.215572495 1.157657521 0.968295641 0.955469893 1.135557277 1 14.22431227 -5.374488118 6.682219912 1.078008846 1.494732283 0.736758969 0.116852066 0.131163244 6.844081003 0.035009758 0.052127493 4.22E-06 5.374488118 0.416723437 VPLS(ph)PLSLLAGPADARR ddPTM_HeLa_A485_30min_R1 2 VPLSPLSLLAGPADARR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 VPLS(0.997)PLS(0.003)LLAGPADARR;VPLS(1)PLSLLAGPADARR ; 172.5 1.69E-12 93301000 37692 50615 48491 40089 65425 52338 52333 56477 48302 47498 TRUE FALSE FALSE 46076.45536 56533.98396 66429.83878 42278.96056 58911.05728 55078.33675 41151.62703 42625.9272 57995.76835 35657.62274 1.292190893 1.585466995 1.86299124 1.185692071 1.652130814 1.544644105 1.154076572 1.195422575 1.626461999 1 15.1219229 -6.749099187 24.84016257 1.260275505 1.529801393 0.258653786 0.228361327 299.0174286 601906.9799 0.085979464 0.0661019 1.78E-07 6.749099187 0.269525888 VPLS(ph)PLSLLAGPADARR ddPTM_HeLa_A486_30min_R1 1 VPLSPLSLLAGPADARR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 0 VPLS(0.978)PLS(0.022)LLAGPADARR 117.26 4.90E-05 36805000 24633 20553 16589 10211 23995 16794 20508 23343 14905 23639 TRUE FALSE FALSE 22906.3539 18924.30543 23012.70507 23771.72404 20985.32336 14722.12703 15376.68149 18028.30847 16196.9774 17719.64054 1.292709853 1.067984725 1.298711733 1.341546629 1.184297351 0.830836664 0.867776153 1.017419537 0.914069186 1 14.11306172 -6.152615723 5.238395891 0.924459098 1.242494415 0.769045011 0.085626006 0.113887908 4.581114793 0.029604004 0.029647789 7.04E-07 6.152615723 0.318035317 VPLSNENSQVPQS(ph)PEDWR ddPTM_HeLa_A486_30min_R1 2 VPLSNENSQVPQSPEDWR 18 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 VPLSNENSQVPQS(1)PEDWR;VPLS(0.001)NENS(0.09)QVPQS(0.909)PEDWR ; 127.83 1.04E-05 112110000 62131 85472 59938 30369 84250 58302 67360 77040 60491 58837 TRUE FALSE FALSE 57775.93774 78698.88744 83147.5988 70700.56676 73682.5794 51109.29201 50505.81554 59499.67377 65734.40859 44103.83224 1.30999813 1.784400208 1.885269252 1.603048152 1.670661611 1.15884016 1.145157075 1.349081718 1.49044664 1 15.4286164 -6.254243916 24.36605582 1.245300971 1.66849168 0.56403841 0.1848719 308.2421156 1043803.558 0.062684299 0.061398237 5.57E-07 6.254243916 0.423190708 VPLSNENSQVPQS(ph)PEDWRK ddPTM_HeLa_A485_30min_R1 1 VPLSNENSQVPQSPEDWRK 19 1 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 VPLSNENSQVPQS(1)PEDWRK 127.35 2.87E-06 485050000 78401 65544 57839 88775 95481 89916 108520 122300 76505 129510 TRUE FALSE FALSE 95841.03197 73208.80064 79236.05298 93624.55346 85974.57639 94623.86272 85333.81547 92305.73324 91858.85175 97225.54045 0.985759827 0.752979107 0.814971587 0.962962541 0.884279748 0.973240799 0.877689289 0.949397996 0.944801657 1 16.56904773 -5.261212176 24.99912178 0.935905164 0.841411065 0.284723699 0.064734458 24.06382975 2647584.42 0.017112454 0.027359798 5.48E-06 5.261212176 -0.094494099 VPLSNENSQVPQS(ph)PEDWRK ddPTM_HeLa_A486_30min_R1 1 VPLSNENSQVPQSPEDWRK 19 1 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 VPLSNENSQVPQS(1)PEDWRK 166.65 1.06E-12 521670000 113940 106980 58688 55190 106880 121250 140620 124290 81060 130370 TRUE FALSE FALSE 105953.3944 98502.51519 81413.56532 128485.1091 93474.11378 106291.4078 105435.3887 95991.88023 88086.34607 97724.50343 1.084204991 1.007961276 0.833092648 1.314768606 0.956506408 1.087663831 1.078904317 0.98227033 0.9013742 1 16.57643273 -7.44930717 4.977196006 0.947601422 1.049142414 0.115592964 0.116646103 0.46061866 20.90785215 0.067384829 0.030150163 3.55E-08 7.44930717 0.101540992 VPLT(ph)PTR ddPTM_HeLa_A485_30min_R1 2 VPLTPTR 7 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 VPLT(0.996)PT(0.004)R;VPLT(0.996)PT(0.004)R ; 138.06 0.0075252 1861720000 632580 814310 800850 613020 1021920 707680 841360 917080 685980 796360 TRUE FALSE FALSE 773295.2386 909536.4709 1097117.741 646507.7304 920174.0566 744733.0305 661596.5627 692164.6921 823649.8938 597842.1079 1.293477372 1.52136569 1.835129588 1.081402132 1.539158993 1.245701868 1.106640957 1.157771731 1.37770472 1 19.18940499 -6.104430272 1.061335995 1.166073737 1.503435954 0.311748842 0.202276034 0.63317898 1.512526632 0.102932991 0.108562458 7.86E-07 6.104430272 0.337362217 VPLT(ph)PTR ddPTM_HeLa_A486_30min_R1 4 VPLTPTR 7 0 Q68CZ2;E9PCX8;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 VPLT(0.999)PT(0.001)R;VPLT(0.999)PT(0.001)R;VPLT(0.999)PT(0.001)R;VPLT(0.974)PT(0.026)R ;;; 151.97 0.00022046 6649780000 2084370 2353810 2174410 914707 2770320 2130400 2718880 2531500 1990400 2110750 TRUE FALSE FALSE 1938266.427 2167285.523 3016399.785 2129484.123 2422840.633 1867572.908 2038587.467 1955132.712 2162929.475 1582204.461 1.22504169 1.36978853 1.906453849 1.345896927 1.531306916 1.180361296 1.288447553 1.235701681 1.367035378 1 20.59350461 -6.260265373 24.99546631 1.23367418 1.486533508 0.319623075 0.189303751 140.5616488 2992689.321 0.064926049 0.061429594 5.49E-07 6.260265373 0.252859328 VPPAPVPCPPPS(ph)PGPSAVPS(ph)SPK ddPTM_HeLa_A485_30min_R1 2 VPPAPVPCPPPSPGPSAVPSSPK 23 0 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 VPPAPVPCPPPS(1)PGPSAVPS(0.606)S(0.394)PK;VPPAPVPCPPPS(1)PGPSAVPS(0.663)S(0.337)PK ; 126.36 3.30E-06 311580000 673710 546630 539530 1100450 882570 598020 942130 768390 577510 1439490 TRUE FALSE FALSE 823574.4652 610553.6235 739124.5987 1160564.797 794698.2319 629331.4025 740836.229 579941.1477 693410.9598 1080651.635 0.762109119 0.564986536 0.683961949 1.07394905 0.735387988 0.582362884 0.685545837 0.536658743 0.641660029 1 20.04347009 -6.013897183 24.73838913 0.659924316 0.769581558 0.036904885 0.167253383 1568.684962 2792419.372 0.054930053 0.057182797 9.69E-07 6.013897183 0.109657242 VPPAPVPCPPPS(ph)PGPSAVPS(ph)SPK ddPTM_HeLa_A486_30min_R1 1 VPPAPVPCPPPSPGPSAVPSSPK 23 0 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 VPPAPVPCPPPS(1)PGPSAVPS(0.659)S(0.341)PK 120.91 3.30E-05 188790000 291760 339430 183190 209850 319790 347920 457250 421930 245740 552470 TRUE FALSE FALSE 271309.1307 312532.3306 254126.074 488541.4052 279678.9563 304997.1678 342841.2137 325865.7497 267040.9411 414127.916 0.655133644 0.754675835 0.613641496 1.179687209 0.675344369 0.73648058 0.827863084 0.786872213 0.644827192 1 18.65971693 -11.33394776 2.367141972 2.416883627 0.770533582 0.17473496 0.153351476 21426009.13 3091706.053 162278356.1 0.039588148 4.64E-12 11.33394776 -1.646350046 VPPAVIIPPAAPLS(ph)GR ddPTM_HeLa_A486_30min_R1 1 VPPAVIIPPAAPLSGR 16 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 VPPAVIIPPAAPLS(1)GR 65.225 0.0081943 0 16007 19916 12402 13729 20580 21819 19888 23375 11780 23879 TRUE FALSE FALSE 14884.99196 18337.78363 17204.38654 31961.80583 17998.6645 19127.19362 14911.81205 18053.02277 12801.09988 17899.54297 0.831585029 1.024483343 0.961163453 1.785621335 1.005537657 1.068585586 0.833083396 1.008574509 0.715163505 1 14.12763513 -6.538232408 2.558623895 0.890017755 1.14235659 0.156166544 0.252575568 0.555526977 7.346983549 0.110400304 0.085644707 2.90E-07 6.538232408 0.252338835 VPPELLGGS(ph)PPWK ddPTM_HeLa_A485_30min_R1 3 VPPELLGGSPPWK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 VPPELLGGS(1)PPWK;VPPELLGGS(1)PPWK;VPPELLGGS(1)PPWK ;; 203.27 1.55E-21 6130900000 1464730 1579360 1170660 1586050 1846580 1615260 2092920 2215380 1312800 2264520 TRUE FALSE FALSE 1790554.135 1764052.413 1603735.849 1672691.895 1662728.011 1699832.516 1645750.544 1672054.581 1576266.918 1700016.839 1.053256705 1.037667612 0.943364684 0.983926663 0.978065613 0.999891576 0.968078966 0.983551776 0.92720665 1 20.69711761 -4.658012273 6.278160267 0.973905979 1.048828326 0.63939158 0.021840863 0.118548065 6.141991605 0.005386462 0.014569472 2.20E-05 4.658012273 0.074922346 VPPELLGGS(ph)PPWK ddPTM_HeLa_A486_30min_R1 2 VPPELLGGSPPWK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 VPPELLGGS(1)PPWK;VPPELLGGS(1)PPWK ; 146.96 8.18E-08 3482900000 1186580 1131430 750020 480900 1139830 1144740 1419680 1311400 963720 1437940 TRUE FALSE FALSE 1103406.87 1041771.366 1040447.83 1119559.503 996861.8929 1003513.618 1064461.048 1012822.848 1047256.026 1077870.465 1.023691534 0.966508871 0.965280954 1.038677225 0.924843871 0.931015044 0.987559343 0.939651731 0.971597293 1 20.03975238 -4.260712087 22.67776798 0.967575971 1.02369159 0.199835624 0.032359102 27.01033929 841534.8537 0.008064581 0.046449681 5.49E-05 4.260712087 0.056115619 VPPVIRGLR ddPTM_HeLa_A485_30min_R1 1 VPPVIRGLR 9 1 Q6EMK4 Q6EMK4 VASN Vasorin 0 0 0 0.038052 8125500 1042.2 2028.5 3220.1 972.69 3772.7 1993.4 1618.2 2017.4 1829.3 1283 FALSE FALSE TRUE 1274.033794 2265.715429 4411.34899 1025.825592 3397.076741 2097.771342 1272.458351 1522.629487 2196.423731 963.1717119 1.322748352 2.352348394 4.580023411 1.065049543 3.526968971 2.177982717 1.321112669 1.580849466 2.280407225 1 9.911649211 -6.542985781 7.415246875 1.61162801 2.611954373 0.19141412 0.986933364 0.293082571 72.20491642 0.367511458 0.288813889 2.86E-07 6.542985781 1.000326362 VPQALNFS(ph)PEESDSTFSK ddPTM_HeLa_A485_30min_R1 3 VPQALNFSPEESDSTFSK 18 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 VPQALNFS(0.998)PEES(0.002)DSTFSK;VPQALNFS(1)PEESDSTFSK;VPQALNFS(1)PEESDSTFSK ;; 180.62 1.04E-17 201308000 179879 135347 135105 232500 231815 145100 226661 206889 193707 310979 TRUE FALSE FALSE 219892.463 151174.6543 185085.9617 245200.8863 208734.6846 152697.2116 178233.0257 156149.1484 232582.2181 233457.6584 0.941894408 0.647546349 0.792803127 1.050301318 0.894100823 0.654068119 0.763449042 0.668854256 0.996250111 1 17.83280139 -7.791921225 23.78789995 0.998126179 0.801377404 0.285309298 0.124399076 187.6890265 146463.8813 0.125737553 0.03248707 1.61E-08 7.791921225 -0.196748775 VPQALNFS(ph)PEESDSTFSK ddPTM_HeLa_A486_30min_R1 1 VPQALNFSPEESDSTFSK 18 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 VPQALNFS(1)PEESDSTFSK 141.07 3.28E-07 95227000 193290 180330 99699 59227 235440 221530 235080 282030 151610 219030 TRUE FALSE FALSE 179741.3692 166039.994 138305.1228 137883.4492 205908.9198 194199.881 176260.4976 217817.9257 164751.6769 164183.4624 1.094759281 1.011307666 0.84238157 0.839813262 1.254139222 1.182822424 1.073558171 1.326673969 1.003460851 1 17.32494929 -5.762340806 24.99995808 1.155250925 0.944176754 0.382391327 0.119238196 23.80618922 660244.2491 0.036110889 0.043363022 1.73E-06 5.762340806 -0.211074171 VPS(ph)FESFEDDCSQSLCLNKPTMSFK ddPTM_HeLa_A486_30min_R1 1 VPSFESFEDDCSQSLCLNKPTMSFK 25 1 A0A590UJP9;P15036 A0A590UJP9 ETS2 Protein C-ets-2 1 0 VPS(1)FESFEDDCSQSLCLNKPTMSFK 265.23 3.55E-62 123160000 39605 44225 29136 22611 48535 64706 68061 76961 43104 71051 TRUE FALSE FALSE 36828.89402 40720.44994 40418.23949 52639.5507 42447.28773 56723.2316 51031.41792 59438.66035 46840.28943 53259.36714 0.691500782 0.764568791 0.758894476 0.988362302 0.796991966 1.065037657 0.958167937 1.116022656 0.879475141 1 15.70074767 -5.164062628 0.726180044 1.007517249 0.656276466 0.616470772 0.084871912 0.698813481 0.595855096 0.039791518 0.167528006 6.85E-06 5.164062628 -0.351240783 VPS(ph)GIFDVNSR ddPTM_HeLa_A485_30min_R1 3 VPSGIFDVNSR 11 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 VPS(1)GIFDVNSR;VPS(1)GIFDVNSR;VPS(1)GIFDVNSR ;; 97.631 0.0017277 134203000 88171 83263 101896 133758 140628 101363 132723 117266 109139 179600 TRUE FALSE FALSE 107784.3348 92999.88356 139591.5706 141064.8608 126626.5825 106670.2099 104365.6468 88506.32963 131042.1962 134829.0253 0.799414922 0.689761595 1.035322849 1.046249949 0.939164117 0.791151681 0.774059195 0.656433802 0.971913844 1 17.04077158 -6.265867161 24.52881649 0.813198034 0.905615261 0.035389232 0.135010229 793.7452499 4397139.165 0.049284257 0.044974818 5.42E-07 6.265867161 0.092417227 VPS(ph)GIFDVNSR ddPTM_HeLa_A486_30min_R1 3 VPSGIFDVNSR 11 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 VPS(1)GIFDVNSR;VPS(1)GIFDVNSR;VPS(1)GIFDVNSR ;; 105.65 0.00072895 218111000 130659.6 235538.2 160667 161161.1 242586.6 298248.4 386672 425909 222184.8 271476.6 TRUE FALSE FALSE 121501.0368 216873.2952 222881.5652 375191.1854 212159.1266 261453.5448 289922.5758 328938.8182 241443.9574 203497.0923 0.597065223 1.065731666 1.095256756 1.843717672 1.042565887 1.284802361 1.424701319 1.616430065 1.186473746 1 17.63464866 -4.383349107 1.593569557 1.354563085 0.441086702 0.441653998 0.247884074 0.706924138 2.077091513 0.068048964 0.934489928 4.14E-05 4.383349107 -0.913476383 VPS(ph)PDHR ddPTM_HeLa_A485_30min_R1 4 VPSPDHR 7 0 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 0 VPS(1)PDHR;VPS(1)PDHR;VPS(1)PDHR;VPS(1)PDHR ;;; 93.178 0.0061003 9830640000 3596215 4707553 4866895 4159746 5440866 4538378 5211246 4791165 4501645 5599465 TRUE FALSE FALSE 4396180.62 5258060.373 6667361.989 4386982.391 4899154.277 4776000.454 4097820.72 3616124.271 5405083.86 4203621.426 1.04580793 1.250840606 1.586099535 1.043619762 1.165460392 1.136163315 0.974831058 0.860240232 1.285816041 1 22.00320132 -5.851514862 1.493721947 1.036619692 1.274824803 0.218562916 0.171471589 0.571443752 2.648840723 0.067131242 0.085038128 1.41E-06 5.851514862 0.23820511 VPS(ph)PDHR ddPTM_HeLa_A486_30min_R1 6 VPSPDHR 7 0 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 0 VPS(1)PDHR;VPS(1)PDHR;VPS(1)PDHR;VPS(1)PDHR;VPS(1)PDHR;VPS(1)PDHR ;;;;; 82.645 0.010497 24611550000 9882670 11800470 9528310 3639081 12325870 11137780 11754490 11700340 9699420 11946300 TRUE FALSE FALSE 9189945.867 10865357.78 13217926.81 8471964.477 10779844.45 9763713.944 8813392.276 9036427.999 10540173.54 8954868.723 1.026251322 1.213346406 1.476060367 0.946073554 1.203797039 1.090324632 0.98420117 1.009107814 1.177032725 1 23.09424085 -5.29232857 24.99993799 1.063293406 1.236032292 0.294413193 0.127468841 862.9219397 698397.699 0.036122973 0.053584541 5.10E-06 5.29232857 0.172738886 VPS(ph)PDHRR ddPTM_HeLa_A485_30min_R1 10 VPSPDHRR 8 1 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 0 VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR ;;;;;;;;; 88.496 0.0024758 7620674000 1413631 2122198 1913761 1372867 2310553 1975662 2303090 2564416 1783026 1797369 TRUE FALSE FALSE 1728088.339 2370370.595 2621740.832 1447863.248 2080506.23 2079104.607 1811016.007 1935488.955 2140862.963 1349317.986 1.280712446 1.756717556 1.943011846 1.073033386 1.541894684 1.54085592 1.342171397 1.434420185 1.586625973 1 20.36379895 -12.13071493 0.234255544 3.02E-14 1.569978865 0.289139835 0.232071541 80.95647161 1.773215647 40.50256513 0.41147028 7.40E-13 12.13071493 1.569978865 VPS(ph)PDHRR ddPTM_HeLa_A486_30min_R1 8 VPSPDHRR 8 1 Q8NAV1;Q8NAV1-2 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 1 0 VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR;VPS(1)PDHRR ;;;;;;; 78.655 0.0059858 4617252000 1547491 1444308 1365736 531855 1863154 1333433 1607677 1556004 1235235 1579348 TRUE FALSE FALSE 1439019.872 1329855.774 1894585.555 1238185.318 1629459.852 1168927.594 1205419.21 1201735.857 1342306.164 1183868.981 1.215522913 1.123313302 1.600333808 1.045880362 1.376385291 0.987379189 1.018203222 1.015091937 1.133829998 1 20.175078 -6.270879118 24.90747072 1.031050502 1.269657473 0.410641165 0.144573759 659.0668292 1738993.07 0.048833015 0.043622161 5.36E-07 6.270879118 0.238606971 VPS(ph)PGMEEAGCSR ddPTM_HeLa_A485_30min_R1 4 VPSPGMEEAGCSR 13 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR ;;; 179.08 4.98E-17 3524200000 275468 243339 294315 330401 363808 236116 305893 223520 244883 400516 TRUE FALSE FALSE 336744.9062 271795.3793 403194.366 348449.97 327585.9981 248478.6687 240536.4616 168701.3695 294028.7719 300674.7322 1.119964102 0.903951514 1.340965245 1.158893425 1.089502918 0.826403559 0.799988945 0.561075978 0.977896512 1 18.19784411 -6.249733005 3.674073448 0.799320387 1.129387774 0.477324139 0.15018071 0.192121609 5.740534408 0.053185573 0.050128871 5.63E-07 6.249733005 0.330067387 VPS(ph)PGMEEAGCSR ddPTM_HeLa_A486_30min_R1 6 VPSPGMEEAGCSR 13 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR ;;;;; 191.01 1.65E-17 6093560000 290501.8 357002 285236.8 125993 443978 370030.8 431926.5 427043 280736.6 349281.9 TRUE FALSE FALSE 270139.124 328711.8613 395688.1279 293318.0713 388290.1393 324380.1621 323853.9212 329814.6312 305071.0745 261819.4388 1.031776423 1.255490665 1.511301566 1.120306699 1.483045495 1.23894606 1.236936122 1.259702613 1.165196427 1 17.99821269 -8.162975878 1.148744947 0.999634159 1.281450857 0.266253659 0.136315393 0.930160214 2.533565539 0.127098095 0.039926413 6.87E-09 8.162975878 0.281816698 VPS(ph)PGPPTLTSYSVLR ddPTM_HeLa_A485_30min_R1 2 VPSPGPPTLTSYSVLR 16 0 F8W130;Q12815;F8W1U0 F8W130 TROAP Tastin 1 0 VPS(1)PGPPTLTSYSVLR;VPS(1)PGPPTLTSYSVLR ; 85.469 0.0014916 259450000 46188 33488 31842 78114 40361 50241 51462 59150 41505 74051 TRUE FALSE FALSE 56462.36125 37404.13029 43621.68086 82381.17002 36342.51712 52871.54107 40466.72329 44643.36976 49834.67279 55591.44851 1.015666308 0.672839642 0.784683293 1.481903642 0.653742942 0.951073276 0.727930723 0.803061819 0.896444941 1 15.76257535 VPS(ph)PGPPTLTSYSVLR ddPTM_HeLa_A486_30min_R1 1 VPSPGPPTLTSYSVLR 16 0 F8W130;Q12815;F8W1U0 F8W130 TROAP Tastin 1 0 VPS(1)PGPPTLTSYSVLR 80.632 0.0038003 126520000 29745 31872 27090 31974 29344 43525 47954 43629 22244 67688 TRUE FALSE FALSE 27660.0291 29346.34664 37579.9735 74437.08788 25663.4019 38155.32803 35955.40199 33695.62911 24172.12783 50738.48423 0.545148905 0.578384378 0.740660153 1.467073544 0.505797567 0.751999761 0.708641627 0.664103976 0.476406188 1 15.6307928 VPS(ph)PRPDNSFHENNVSTR ddPTM_HeLa_A485_30min_R1 2 VPSPRPDNSFHENNVSTR 18 1 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 VPS(1)PRPDNSFHENNVSTR;VPS(0.999)PRPDNS(0.001)FHENNVSTR ; 82.593 0.0010442 437480000 202234 288960 259720 235122 307030 269602 287880 328830 278260 337810 TRUE FALSE FALSE 247220.2556 322751.3584 355801.2359 247966.1195 276461.0152 283717.9438 226372.0862 248183.9269 334104.2296 253600.1839 0.974842572 1.272677935 1.403000701 0.977783674 1.090145168 1.118760797 0.892633762 0.978642535 1.317444745 1 17.95219627 -5.287110529 24.96649286 1.050267262 1.222424227 0.208377836 0.145552231 1088.806718 1058917.35 0.041305471 0.061290309 5.16E-06 5.287110529 0.172156965 VPS(ph)PRPDNSFHENNVSTR ddPTM_HeLa_A486_30min_R1 2 VPSPRPDNSFHENNVSTR 18 1 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 VPS(1)PRPDNSFHENNVSTR;VPS(1)PRPDNSFHENNVSTR ; 129.29 4.62E-06 602880000 244190 311630 303130 22848 398340 228361 238402 249640 277550 173235 TRUE FALSE FALSE 227073.542 286935.3039 420510.0541 53191.29867 348376.4828 200188.1416 178751.298 192802.4216 301608.2575 129855.8284 1.748658838 2.209645168 3.23828402 0.409618107 2.68279435 1.541618455 1.376536581 1.484742148 2.322639354 1 16.98655124 -5.245173217 24.9800951 1.605814012 2.37994074 0.242014062 0.686093281 1273.627915 1955919.282 0.179286493 0.309337347 5.69E-06 5.245173217 0.774126728 VPS(ph)PYVR ddPTM_HeLa_A485_30min_R1 4 VPSPYVR 7 0 A0A2R8Y568;A0A024RDL5;A0A2R8Y522;A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-5;Q8WXX7-2;Q8WXX7 A0A2R8Y568 AUTS2 Autism susceptibility gene 2 protein 1 0 VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR;VPS(0.999)PY(0.001)VR ;;; 110.41 0.0029827 1462540000 1062870 1443780 1386850 1138820 1652040 1470230 1674120 1857370 1326890 1646200 TRUE FALSE FALSE 1299301.765 1612617.512 1899903.527 1201030.853 1487557.097 1547208.969 1316430.586 1401847.095 1593184.652 1235832.636 1.051357382 1.304883416 1.537346944 0.971839404 1.203688148 1.251956717 1.065217528 1.134334095 1.289158908 1 20.23705195 -5.277805748 24.99083318 1.141824219 1.298564709 0.214960001 0.14517777 1299.422196 1984166.572 0.040857897 0.060820937 5.27E-06 5.277805748 0.15674049 VPS(ph)PYVR ddPTM_HeLa_A486_30min_R1 4 VPSPYVR 7 0 A0A2R8Y568;A0A024RDL5;A0A2R8Y522;A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-5;Q8WXX7-2;Q8WXX7 A0A2R8Y568 AUTS2 Autism susceptibility gene 2 protein 1 0 VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR;VPS(1)PYVR ;;; 89.698 0.0057163 1147940000 1312100 1471240 1187360 477048 1720780 1360010 1548300 1556590 1232810 1527740 TRUE FALSE FALSE 1220128.566 1354653.584 1647137.591 1110591.853 1504943.727 1192225.794 1160898.964 1202188.437 1339670.963 1145183.96 1.06544329 1.182913516 1.438317029 0.969793406 1.314150197 1.041077971 1.013722689 1.049777572 1.169830359 1 20.12714794 -6.295932498 24.84097857 1.055420346 1.194604259 0.233410397 0.126167987 881.4826502 634816.306 0.043419622 0.038294295 5.06E-07 6.295932498 0.139183912 VPS(ph)S(ph)DEEVVEEPQSR ddPTM_HeLa_A485_30min_R1 4 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR ;;; 219.53 3.28E-33 6519660000 669610 675722 669568 776030 802480 667353 862394 728855 606774 1046820 TRUE FALSE FALSE 818562.4344 754741.8099 917269.0662 818422.5539 722582.2735 702294.5712 678136.4768 550102.1684 728547.9761 785867.0393 1.041604233 0.960393772 1.167206436 1.041426237 0.919471409 0.893655715 0.862915026 0.699993944 0.927062645 1 19.58392572 -5.913425324 2.369946285 0.857037441 1.056224796 0.482008408 0.085533532 0.238175196 2.720542233 0.029572425 0.034134271 1.22E-06 5.913425324 0.199187355 VPS(ph)S(ph)DEEVVEEPQSR ddPTM_HeLa_A486_30min_R1 4 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR;VPS(1)S(1)DEEVVEEPQSR ;;; 232.26 3.84E-34 6600080000 1163960 1307720 970260 436521 1312430 1265760 1358630 1354670 1049360 1306870 TRUE FALSE FALSE 1082372.415 1204091.505 1345970.656 1016242.949 1147812.791 1109603.401 1018686.404 1046241.213 1140319.37 979621.2457 1.104888669 1.229139843 1.373970463 1.037383533 1.171690382 1.132686133 1.039877818 1.068005842 1.164041077 1 19.90186454 -5.284504486 24.99718141 1.093888104 1.235313714 0.416498198 0.080217947 772.8565292 837593.7161 0.022653445 0.033624524 5.19E-06 5.284504486 0.14142561 VPS(ph)SQSMEDR ddPTM_HeLa_A486_30min_R1 1 VPSSQSMEDR 10 0 O95049-5;O95049;O95049-4;O95049-3 O95049-5 TJP3 Tight junction protein ZO-3 1 0 VPS(0.932)S(0.034)QS(0.034)MEDR 56.202 0.037386 14005000000 230340 226090 157820 46437 239590 172850 151000 198750 171820 125290 TRUE FALSE FALSE 214194.3555 208173.805 218932.1306 108107.6828 209538.3881 151525.5244 113218.2029 153498.9637 186713.4959 93916.5685 2.280687624 2.216582317 2.331134262 1.151103416 2.231112055 1.613405673 1.205518948 1.634418358 1.988078344 1 16.51909208 -1 0.147707002 1.067438303 5.728046207 0.431989826 0.367100203 69.66155906 0.678454794 1.370344599 69.33772734 0.1 1 4.660607904 VPS(ph)VESLFR ddPTM_HeLa_A485_30min_R1 6 VPSVESLFR 9 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR ;;;;; 192.21 1.13E-08 2038580000 219561 273496 308598 269641 389925 284353 348098 344007 307889 319184 TRUE FALSE FALSE 268401.587 305478.9781 422761.242 284370.8051 351102.6979 299241.2834 273724.0186 259638.7439 369679.4982 239617.3029 1.120126066 1.274861933 1.764318506 1.186770745 1.465264376 1.248830029 1.142338284 1.083555906 1.542791333 1 17.87037256 -6.464603679 6.714731953 1.198461766 1.369462455 0.127955895 0.210693441 0.521088681 49.54447721 0.074553785 0.064977948 3.43E-07 6.464603679 0.171000689 VPS(ph)VESLFR ddPTM_HeLa_A486_30min_R1 4 VPSVESLFR 9 0 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR;VPS(1)VESLFR ;;; 200.68 8.91E-10 1425239000 114292 129551 120056 52853.4 156763 140046 153143 169283 121984 149134 TRUE FALSE FALSE 106280.721 119284.9069 166544.8984 123045.3863 137100.3228 122768.5484 114825.0016 130740.9563 132557.6713 111789.8757 0.950718662 1.067045707 1.489803056 1.100684525 1.226410906 1.098208113 1.027150275 1.169524123 1.185775282 1 16.77043001 -6.290333519 22.57170524 1.102415446 1.175640107 0.057242336 0.140321305 744.7993976 581822.554 0.051199715 0.045168383 5.12E-07 6.290333519 0.073224662 VPS(ph)WGLEDNVVCSQPAR ddPTM_HeLa_A485_30min_R1 1 VPSWGLEDNVVCSQPAR 17 0 B8ZZD4;Q86VP1-2;Q86VP1;H7C3L5;Q86VP1-3;Q86VP1-4 B8ZZD4 TAX1BP1 Tax1-binding protein 1 1 0 VPS(1)WGLEDNVVCSQPAR 87.932 0.0010207 66762000 3552.8 6679.8 7088.2 7320 7613.1 4609.7 5068.4 10099 3087.2 7853.6 TRUE FALSE FALSE 4343.108103 7460.944503 9710.420145 7719.873065 6855.113033 4851.056764 3985.494935 7622.204415 3706.772723 5895.842055 0.736639154 1.26545868 1.64699462 1.309375827 1.162702964 0.822792863 0.675984007 1.292810144 0.628709638 1 12.52548216 -6.115516225 4.09525162 0.890725142 1.267577277 0.286050448 0.268701016 0.310037392 8.867421224 0.092798262 0.093759792 7.66E-07 6.115516225 0.376852135 VPS(ph)WGLEDNVVCSQPAR ddPTM_HeLa_A486_30min_R1 2 VPSWGLEDNVVCSQPAR 17 0 B8ZZD4;Q86VP1-2;Q86VP1;H7C3L5;Q86VP1-3;Q86VP1-4 B8ZZD4 TAX1BP1 Tax1-binding protein 1 1 0 VPS(1)WGLEDNVVCSQPAR;VPS(1)WGLEDNVVCSQPAR ; 145.91 7.06E-08 330693000 92809 98915 55579.9 54754 106083.1 121120 139710 129109.9 68641 120887 TRUE FALSE FALSE 86303.56837 91076.61516 77101.92576 127470.0791 92777.16841 106177.4459 104753.0803 99714.39422 74590.85715 90616.10836 0.952408682 1.005081953 0.850863353 1.406704409 1.02384852 1.171728159 1.15600948 1.10040473 0.82315229 1 16.46747991 VPSGIFDVNS(ph)R ddPTM_HeLa_A485_30min_R1 1 VPSGIFDVNSR 11 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 VPSGIFDVNS(1)R 69.03 0.014222 30359000 36272 41514 35942 30248 37198 37982 47463 58595 33049 47033 TRUE FALSE FALSE 44340.58126 46368.70118 49238.44147 31900.37165 33494.43651 39970.67879 37322.14231 44224.48438 39681.63116 35308.53868 1.255803353 1.313243281 1.39451938 0.903474707 0.948621432 1.132040019 1.057028801 1.252515285 1.123853681 1 15.10772949 -5.248320606 24.99887663 1.068450301 1.320394143 0.595752818 0.098540649 617.4507148 1176599.767 0.029248637 0.050279027 5.65E-06 5.248320606 0.251943842 VPSGIFDVNS(ph)R ddPTM_HeLa_A486_30min_R1 1 VPSGIFDVNSR 11 0 Q5VZ89-3;Q5VZ89;Q5VZ89-7;Q5VZ89-5;X6RAE7 Q5VZ89-3 DENND4C DENN domain-containing protein 4C 1 0 VPSGIFDVNS(1)R 62.528 0.024946 13399000 38264 43984 33290 14388 40315 28741 39567 38934 32360 41526 TRUE FALSE FALSE 35581.8912 40498.54765 46180.77954 33495.99113 35258.31678 25195.22764 29666.9181 30069.57812 35164.99086 31127.61931 1.143097095 1.301048668 1.483594973 1.076085864 1.132702004 0.809417109 0.95307379 0.966009569 1.129703833 1 14.92590762 -5.620485299 2.275660981 0.977022794 1.304097891 0.567716401 0.118697593 0.21126238 2.224121409 0.038655951 0.054510438 2.40E-06 5.620485299 0.327075097 VPSS(ph)DEEVVEEPQSR ddPTM_HeLa_A485_30min_R1 2 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VPS(0.099)S(0.901)DEEVVEEPQSR;VPS(0.021)S(0.979)DEEVVEEPQSR ; 242.07 3.04E-41 1055560000 362700 462790 508240 413270 580480 461930 561580 559780 490890 586730 TRUE FALSE FALSE 443381.3637 516909.2648 696259.1256 435845.8936 522685.373 486115.9405 441593.8453 422493.0773 589407.1203 440469.009 1.00661194 1.17354287 1.580722165 0.989504108 1.18665641 1.103632561 1.002553724 0.959189111 1.338135279 1 18.74868099 VPSS(ph)DEEVVEEPQSR ddPTM_HeLa_A486_30min_R1 2 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VPS(0.002)S(0.998)DEEVVEEPQSR;VPS(0.038)S(0.962)DEEVVEEPQSR ; 297.67 2.58E-67 382570000 262616 281098 243428 77079 353710 250120 283965 342350 234132 269439 TRUE FALSE FALSE 244207.9746 258822.7707 337689.8408 179443.8074 309344.3936 219262.7374 212913.9535 264404.3784 254426.7503 201969.7206 1.209131615 1.281492938 1.671982512 0.88846886 1.531637478 1.085621829 1.054187493 1.309128802 1.259727198 1 17.62377949 -5.882623443 1.122667437 1.169129229 1.33234829 0.092561896 0.21677711 1.326295592 3.55867773 0.095596498 0.125104887 1.31E-06 5.882623443 0.163219061 VPST(ph)PPPK ddPTM_HeLa_A485_30min_R1 2 VPSTPPPK 8 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 VPS(0.229)T(0.771)PPPK;VPS(0.024)T(0.976)PPPK ; 83.948 0.029812 2353020000 1178640 1293010 1067690 1376340 1558850 1538500 1867200 1961090 1227640 1905540 TRUE FALSE FALSE 1440824.402 1444216.272 1462672.961 1451525.969 1403645.421 1619053.481 1468257.466 1480129.603 1474016.087 1430523.947 1.007200477 1.009571545 1.022473594 1.01468135 0.981210712 1.131790547 1.026377412 1.034676564 1.030402945 1 20.44811222 VPST(ph)PPPK ddPTM_HeLa_A486_30min_R1 3 VPSTPPPK 8 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 VPS(0.011)T(0.989)PPPK;VPS(0.008)T(0.992)PPPK;VPS(0.016)T(0.984)PPPK ;; 98.033 0.012476 3724900000 2430090 2666410 1624720 946370 2810090 2655050 3090200 2993940 2163370 3112050 TRUE FALSE FALSE 2259753.24 2455113.961 2253855.096 2203197.187 2457622.309 2327496.926 2316999.275 2312285.219 2350892.653 2332772.424 0.968698539 1.052444694 0.966170155 0.944454403 1.053519959 0.997738528 0.993238454 0.991217658 1.00776768 1 21.15361414 -2.46723081 15.82598014 0.997904117 1.000852565 0 0.033095114 0 0 0.007418302 0 0.003410116 2.46723081 0.002948448 VPSVESLFRS(ph)PIKESLFR ddPTM_HeLa_A485_30min_R1 1 VPSVESLFRSPIKESLFR 18 2 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 VPSVESLFRS(0.999)PIKESLFR 80.98 0.0012235 41222000 10957 14874 10657 11692 22285 18280 24897 32798 12430 18654 TRUE FALSE FALSE 13394.34685 16613.38491 14599.46777 12330.70435 20066.22715 19237.11253 19577.55256 24754.23907 14924.58699 14003.9011 0.956472539 1.186339777 1.042528626 0.88051924 1.432902661 1.373696686 1.398007057 1.767667373 1.065744958 1 13.77354116 -5.771551525 24.99959636 1.382671414 1.030460634 0.346545358 0.212212469 205.8614896 508936.5953 0.063070366 0.072322951 1.69E-06 5.771551525 -0.352210781 VPSVESLFRS(ph)PIKESLFR ddPTM_HeLa_A486_30min_R1 2 VPSVESLFRSPIKESLFR 18 2 E7EVX2;Q13439-3;Q13439-4;Q13439;Q13439-5;Q86W71 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 0 VPSVESLFRS(1)PIKESLFR;VPSVES(0.002)LFRS(0.997)PIKESLFR ; 109.85 4.95E-05 82540000 46334 46829 43451 36588 78771 58293 75428 78985 41595 69599 TRUE FALSE FALSE 43086.22587 43118.09949 60276.39086 85178.71306 68890.80667 51101.40234 56555.1166 61001.83973 45200.48809 52170.95739 0.825866115 0.82647706 1.155362943 1.632684492 1.320481933 0.979499034 1.084034479 1.169268167 0.86639177 1 15.67095929 -7.756137765 24.98833969 0.933195861 1.132652099 0.101848635 0.225781955 304.4658176 1435105.647 0.182593027 0.064420653 1.75E-08 7.756137765 0.199456238 VPTANVS(ph)VVDLTCR ddPTM_HeLa_A486_30min_R1 1 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VPT(0.022)ANVS(0.978)VVDLTCR 85.493 0.0019231 192450000 8071.8 16855 9526.6 4945 14135 10875 12222 18576 9397.8 9374.8 TRUE FALSE FALSE 7506.008503 15519.34842 13215.55465 11512.20991 12362.0565 9533.353069 9163.926329 14346.65031 10212.40887 7027.28906 1.068122919 2.208440308 1.880604958 1.638214937 1.759150135 1.356618888 1.304048581 2.04156257 1.453250149 1 12.77875253 -6.243141017 23.32399868 1.488253237 1.743936717 0.118045311 0.36049983 829.4464383 1057252.141 0.117024626 0.116735966 5.71E-07 6.243141017 0.255683481 VPTANVSVVDLT(ph)CR ddPTM_HeLa_A486_30min_R1 1 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VPTANVSVVDLT(1)CR 91.355 0.0011737 0 23530 33032 22462 13765 32573 31070 35285 30918 25579 39156 TRUE FALSE FALSE 21880.66851 30414.42402 31159.88795 32045.61564 28487.39061 27236.8993 26456.31979 23878.64634 27796.20832 29351.08274 0.745480796 1.036228349 1.061626524 1.091803527 0.970573756 0.92796915 0.901374577 0.813552486 0.947024972 1 14.8411261 -6.299576961 3.006992033 0.902053472 0.996160195 0.079988146 0.098859974 0.522406902 9.502462734 0.037613693 0.034047371 5.02E-07 6.299576961 0.094106723 VPTANVSVVDLTCR ddPTM_HeLa_A485_30min_R1 4 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 297.88 3.37E-65 2108300000 215294 274876 278671 231062 322278 285017 366074 356759 240910 332394 FALSE FALSE TRUE 263185.4075 307020.3571 381762.9994 243684.332 290190.8707 299940.0494 287859.2994 269263.2959 289258.4272 249534.2931 1.054706366 1.230373402 1.529901941 0.976556484 1.162929821 1.201999315 1.15358613 1.079063293 1.159193086 1 17.92887857 -7.903047674 0.321373919 0.98272451 1.234091447 0.149741161 0.136835891 3.306522623 1.056598011 0.303688055 0.188901777 1.25E-08 7.903047674 0.251366937 VPTANVSVVDLTCR ddPTM_HeLa_A486_30min_R1 4 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 266.97 3.23E-41 2202970000 194356 289018 253611 125987 351315 230298 282956 311260 222083 281125 FALSE FALSE TRUE 180732.6481 266115.1611 351815.9711 293304.103 307249.7968 201886.1743 212157.416 240392.8928 241333.3333 210729.4702 0.857652458 1.262828407 1.669514809 1.391851376 1.458029561 0.95803484 1.006776204 1.140765421 1.145228207 1 17.68503256 -6.262987161 24.99816232 1.056247224 1.346879136 0.325806799 0.198795308 180.8238982 2920458.92 0.072591182 0.067441495 5.46E-07 6.262987161 0.290631912 VPTTPAS(ph)PVKNWGGFR ddPTM_HeLa_A485_30min_R1 2 VPTTPASPVKNWGGFR 16 1 Q6IE81;Q6IE81-2 Q6IE81 JADE1 Protein Jade-1 1 0 VPT(0.002)T(0.001)PAS(0.997)PVKNWGGFR;VPT(0.001)T(0.001)PAS(0.998)PVKNWGGFR ; 94.057 0.00040667 1248580000 1026040 1033450 1007220 1166650 1354330 1123660 1510260 1071820 1148820 1635530 TRUE FALSE FALSE 1254279.058 1154302.988 1379832.592 1230381.135 1219488.15 1182493.1 1187580.613 808954.4645 1379377.636 1227822.471 1.021547567 0.940122058 1.123804642 1.002083904 0.993212112 0.963081495 0.96722502 0.658852956 1.123434103 1 20.22767055 -6.497572613 1.902643343 0.909455376 1.019044555 0.080343285 0.117142681 0.675039416 4.898583482 0.050931357 0.039430644 3.18E-07 6.497572613 0.109589179 VPTTPAS(ph)PVKNWGGFR ddPTM_HeLa_A486_30min_R1 2 VPTTPASPVKNWGGFR 16 1 Q6IE81;Q6IE81-2 Q6IE81 JADE1 Protein Jade-1 1 0 VPTTPAS(1)PVKNWGGFR;VPTTPAS(1)PVKNWGGFR ; 159.75 4.63E-10 1243710000 739910 799960 595170 353140 911850 782190 927000 1001100 702110 925410 TRUE FALSE FALSE 688046.1299 736568.2562 825635.7632 822127.7667 797477.2703 685691.3505 695054.7952 773171.3839 762969.4601 693681.3126 0.99187641 1.061825139 1.190223447 1.185166375 1.14963061 0.988481797 1.001979991 1.114591628 1.099884697 1 19.40391349 -6.247584727 24.91519534 1.04571162 1.120743384 0.234457339 0.066967732 1316.42472 2367364.447 0.024499346 0.024375028 5.65E-07 6.247584727 0.075031764 VPVAS(ph)PSAHNISSSGGAPDR ddPTM_HeLa_A485_30min_R1 1 VPVASPSAHNISSSGGAPDR 20 0 E7ETY4;Q7KZI7-15;Q7KZI7-16;Q7KZI7-13;E9PC69;Q7KZI7-14;Q7KZI7-6;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-9;Q7KZI7-3;Q7KZI7-4;Q7KZI7-5;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 VPVAS(0.975)PS(0.025)AHNISSSGGAPDR 105.73 1.05E-05 0 91228 96935 113960 54105 203590 113950 130830 175530 113550 99503 TRUE FALSE FALSE 111521.3539 108270.705 156118.5463 57060.61915 183319.8648 119916.2458 102877.1017 132480.9923 136338.4435 74698.73332 1.492948393 1.449431606 2.089975818 0.763876663 2.454122803 1.605331717 1.377226857 1.773537333 1.825177448 1 16.18879616 -10.07831131 4.890652288 0.999984919 1.64730555 0.172502011 0.425748171 8.79E-05 1.66E-05 0.388004185 0.094101919 8.35E-11 10.07831131 0.647320631 VPVFRPMDLMVEAS(ph)PR ddPTM_HeLa_A485_30min_R1 2 VPVFRPMDLMVEASPR 16 1 A0A590UJY3;P63151;P63151-2 A0A590UJY3 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 1 0 VPVFRPMDLMVEAS(1)PR;VPVFRPMDLMVEAS(1)PR ; 114.02 7.06E-05 102685000 90390 96609 106632 87614 119258 119120 137804 132201 90974 124335 TRUE FALSE FALSE 110496.9437 107906.5822 146079.6141 92400.13097 107384.2548 125356.939 108361.0496 99778.49747 109231.6473 93340.57272 1.183804003 1.156052283 1.565017333 0.98992462 1.150456352 1.343005891 1.1609212 1.068972415 1.170248309 1 16.5102167 -7.90659693 0.452661844 0.992776311 1.245759351 0.184502564 0.144930632 1.940577854 1.045740392 0.186438309 0.100242824 1.24E-08 7.90659693 0.25298304 VPVFRPMDLMVEAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VPVFRPMDLMVEASPR 16 1 A0A590UJY3;P63151;P63151-2 A0A590UJY3 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 1 0 VPVFRPMDLMVEAS(1)PR 91.637 0.00019153 0 36042 46600 40518 19899 54874 44465 46676 50253 40766 44463 TRUE FALSE FALSE 33515.64192 42907.24629 56207.65471 46325.87764 47991.19124 38979.36039 34997.17111 38811.48892 44299.6297 33329.17539 1.005594694 1.287377974 1.686440005 1.389949709 1.43991535 1.169526696 1.050046114 1.164489924 1.329154687 1 15.024498 -6.318962678 6.683942526 1.145717635 1.377132865 0.277066322 0.176261187 0.34507644 33.05205159 0.065552037 0.057937911 4.80E-07 6.318962678 0.23141523 VPVHDVTDASK ddPTM_HeLa_A485_30min_R1 1 VPVHDVTDASK 11 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 160.36 4.76E-06 25053000 40594 30729 31168 54864 51303 36344 49347 39289 41456 79131 FALSE FALSE TRUE 49623.99525 34322.48924 42698.34021 57861.0814 46195.09318 38246.91564 38803.61032 29653.31115 49775.83894 59405.098 0.835349102 0.577770097 0.718765588 0.974008685 0.777628432 0.643832212 0.653203372 0.499171151 0.837905173 1 15.85829912 -8.004123469 24.98738573 1.000000031 0.710045949 0.342173992 0.126333309 159.918018 969077.3619 0.128986839 0.033304258 9.91E-09 8.004123469 -0.289954081 VPVLIS(ph)PTLK ddPTM_HeLa_A485_30min_R1 2 VPVLISPTLK 10 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 VPVLIS(0.97)PT(0.03)LK;VPVLIS(0.995)PT(0.005)LK ; 122.55 0.00014774 216006000 253150 201059 192691 379410 300830 227400 300100 252360 239250 497450 TRUE FALSE FALSE 309462.3441 224571.1011 263975.4194 400136.2076 270878.3089 239306.3124 235981.1834 190468.3143 287265.2805 373444.8699 0.828669421 0.601350076 0.706865834 1.071473301 0.725350194 0.640807604 0.631903669 0.510030609 0.769230758 1 18.51053575 -5.993935758 24.99870138 0.675778304 0.795632175 0.046808285 0.163486417 386.2094759 1592060.09 0.051012747 0.057689295 1.01E-06 5.993935758 0.11985387 VPVLIS(ph)PTLK ddPTM_HeLa_A486_30min_R1 2 VPVLISPTLK 10 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 0 VPVLIS(0.997)PT(0.003)LK;VPVLIS(0.977)PT(0.023)LK ; 124.12 0.00012195 191624000 431980 560180 335690 232440 506810 602290 641170 611410 470120 643100 TRUE FALSE FALSE 401700.4327 515789.2967 465678.1581 541132.0669 443241.164 527985.5834 480742.4844 472205.29 510870.3801 482063.5741 0.833293479 1.069961151 0.966009844 1.122532579 0.919466203 1.095261314 0.997259511 0.979549826 1.059757276 1 18.87886389 -4.252364808 24.75609479 1.022171012 0.833293366 0.476123121 0.059784882 871.865389 2378455.949 0.013486446 0.161448481 5.59E-05 4.252364808 -0.188877646 VPVPGPGS(ph)GGNGPER ddPTM_HeLa_A486_30min_R1 1 VPVPGPGSGGNGPER 15 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 VPVPGPGS(1)GGNGPER 63.037 0.021747 265280000 79978 83459 49821 30043 107220 138280 136100 148250 70981 86945 TRUE FALSE FALSE 74371.95521 76845.40489 69113.02545 69941.62229 93771.46781 121220.4195 102046.3405 114496.7113 77133.69023 65173.40608 1.14113961 1.179091435 1.060448266 1.073161992 1.438799557 1.859967536 1.56576657 1.756801097 1.183514793 1 15.99199577 -5.846042387 4.838217341 1.537621146 1.114646449 0.324861758 0.240638029 0.20563871 8.445442452 0.072784845 0.084003722 1.43E-06 5.846042387 -0.422974697 VPY(ph)S(ph)SLRR ddPTM_HeLa_A485_30min_R1 1 VPYSSLRR 8 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 2 0 VPY(0.961)S(0.969)S(0.07)LRR 54.776 0.021387 52081000 27825 43193 38846 21977 35707 36335 47723 49650 30115 38399 TRUE FALSE FALSE 34014.57525 48244.04562 53216.75192 23177.54786 32151.88571 38237.44442 37526.59119 37473.25965 36158.80427 28826.83598 1.179962146 1.673581022 1.846083696 0.804026771 1.115345636 1.326453047 1.301793621 1.299943555 1.254345232 1 14.81512488 -1.000000016 0.104558719 0.929615211 2.564990046 0.135276741 0.266465149 254.08335 1.874030089 3.139977991 59.74023559 0.099999996 1.000000016 1.635374835 VPY(ph)S(ph)SLRR ddPTM_HeLa_A486_30min_R1 1 VPYSSLRR 8 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 2 0 VPY(0.976)S(0.983)S(0.041)LRR 73.26 0.006786 18967000 20367 17780 15612 6746.7 19146 13184 21202 16686 15696 17207 TRUE FALSE FALSE 18939.37848 16371.04805 21657.3845 15706.65856 16744.53015 11557.49213 15897.03535 12886.96205 17056.54192 12898.2552 1.468367479 1.269245165 1.679094123 1.217735137 1.298201182 0.896050818 1.232495024 0.999124444 1.322391413 1 13.6548883 -5.70279978 2.089411602 1.104767362 1.446789546 0.479213781 0.159815356 0.266506683 2.387723058 0.050248209 0.06772537 1.98E-06 5.70279978 0.342022183 VQAGPGS(ph)PR ddPTM_HeLa_A485_30min_R1 5 VQAGPGSPR 9 0 Q6PK04;I3L0U5;I3L4F6 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 1 0 VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR ;;;; 128.33 0.00026428 8997280000 3280700 4481720 4161040 3565620 5387280 4123520 4978550 6012320 4129060 5207470 TRUE FALSE FALSE 4010480.397 5005818.168 5700381.851 3760400.792 4850903.487 4339421.131 3914842.121 4537789.093 4957724.468 3909343.565 1.025870541 1.280475375 1.458142974 0.961900823 1.240848599 1.110012732 1.001406516 1.160754745 1.268173131 1 21.89849495 -5.273672543 24.98507647 1.114263021 1.257394222 0.198631031 0.136137685 1238.110452 2528718.982 0.03833054 0.057322658 5.33E-06 5.273672543 0.143131201 VQAGPGS(ph)PR ddPTM_HeLa_A486_30min_R1 5 VQAGPGSPR 9 0 Q6PK04;I3L0U5;I3L4F6 Q6PK04 CCDC137 Coiled-coil domain-containing protein 137 1 0 VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR;VQAGPGS(1)PR ;;;; 177.04 1.11E-06 6831950000 3656470 4479020 3671450 1343463 5136340 3830510 4485640 4398820 3812590 4245660 TRUE FALSE FALSE 3400170.335 4124086.143 5093133.765 3127649.759 4492092.343 3357940.622 3363285.428 3397304.712 4143068.371 3182519.101 1.068389608 1.295855896 1.600346644 0.982759147 1.411489515 1.055120335 1.056799762 1.067489182 1.301820426 1 21.60173774 -6.281994154 24.71611499 1.097998619 1.275304685 0.199552542 0.175679104 1198.902509 1441616.916 0.060920551 0.053786307 5.22E-07 6.281994154 0.177306066 VQAMQIS(ph)SEKEEDDNEKRQDPGDNWEEGGGGGGGMEK ddPTM_HeLa_A485_30min_R1 1 VQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEK 37 3 Q9UKY7;Q9UKY7-2;H0Y8K3 Q9UKY7 CDV3 Protein CDV3 homolog 1 0 VQAMQIS(0.5)S(0.5)EKEEDDNEKRQDPGDNWEEGGGGGGGMEK 98.996 7.05E-05 417500000 47741 20745 14281 96639 47711 57337 99632 96545 31521 143900 TRUE FALSE FALSE 58360.82075 23170.94729 19564.13618 101918.1439 42960.72532 60339.07666 78344.80928 72867.18737 37846.97557 108028.3783 0.540236016 0.214489449 0.181101822 0.943438618 0.397679999 0.558548389 0.725224339 0.674518942 0.350342902 1 16.72105082 -14 0.074723098 2.531984386 1.83E-14 0.318202651 0.220737533 342.2746257 1.823752834 89.68398326 9.726361323 1.00E-14 14 -2.531984386 VQASLAANTFTITGHAETK ddPTM_HeLa_A485_30min_R1 2 VQASLAANTFTITGHAETK 19 0 P20290;P20290-2;D6RDG3;H0Y9Y1 P20290 BTF3 Transcription factor BTF3 0 0 ; ; 266.18 4.53E-48 121578000 161615 163333 138342 163736 234710 176933 233500 256050 156720 233400 FALSE FALSE TRUE 197565.6992 182433.3735 189520.4627 172680.4831 211341.4483 186196.9383 183610.8175 193253.336 188172.2665 175217.6754 1.127544346 1.041181337 1.081628678 0.985519769 1.206165119 1.062660704 1.047901229 1.102932884 1.073934271 1 17.41878879 -8.049915222 21.38076653 0.999999999 1.080266442 0.163333416 0.055193611 4129.970579 1769037.636 0.051342679 0.013256623 8.91E-09 8.049915222 0.080266442 VQASLAANTFTITGHAETK ddPTM_HeLa_A486_30min_R1 2 VQASLAANTFTITGHAETK 19 0 P20290;P20290-2;D6RDG3;H0Y9Y1 P20290 BTF3 Transcription factor BTF3 0 0 ; ; 299.51 3.47E-72 83042000 167906 158981 108238 36179 176989 154032 193652 171430 135841 168415 FALSE FALSE TRUE 156136.6565 146382.7666 150150.6523 84226.54039 154789.3893 135029.0979 145198.2214 132399.1313 147615.8073 126242.7878 1.236796645 1.159533698 1.189380042 0.667179027 1.226124612 1.069598512 1.150150626 1.048765903 1.169300915 1 16.94584144 -5.066699477 24.99999616 1.051713864 1.192257528 0.180565685 0.144173549 325.7888016 122109.7375 0.038781937 0.067172351 8.58E-06 5.066699477 0.140543665 VQAYEEPSVAS(ph)SPNGK ddPTM_HeLa_A486_30min_R1 1 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPSVAS(0.651)S(0.349)PNGK 149 5.78E-08 132050000 327510 355890 196470 142460 322510 365930 437080 410720 285790 458530 TRUE FALSE FALSE 304553.2403 327687.9803 272548.4456 331654.0795 282057.7885 320785.2771 327717.961 317208.022 310562.5073 343711.1035 0.886073325 0.953382003 0.792957932 0.964921052 0.820624605 0.933299139 0.95346923 0.922891401 0.903556807 1 18.39083693 -6.486326298 24.65311175 0.939243751 0.885953064 0.229292535 0.053975147 805.0560697 542977.3607 0.017877754 0.015761447 3.26E-07 6.486326298 -0.053290687 VQAYEEPSVAS(ph)SPNGKESDLR ddPTM_HeLa_A485_30min_R1 1 VQAYEEPSVASSPNGKESDLR 21 1 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPSVAS(0.579)S(0.42)PNGKESDLR 105.03 5.82E-05 659020000 91894 170430 92464 71759 228430 256500 372530 645610 135570 123540 TRUE FALSE FALSE 112335.5033 190360.306 126670.2813 75679.01247 205686.7071 269929.9434 292935.9222 487273.1352 162777.6555 92743.75159 1.211246055 2.052540497 1.365809331 0.816001199 2.217795847 2.910491961 3.15855157 5.25397266 1.755133394 1 16.50096247 -6.096402536 2.885517328 3.113773951 1.41378154 0.261502873 1.086761333 0.311130252 5.022929843 0.371588713 0.381070615 8.01E-07 6.096402536 -1.69999241 VQAYEEPSVASS(ph)PNGK ddPTM_HeLa_A485_30min_R1 6 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPSVAS(0.005)S(0.995)PNGK;VQAYEEPSVAS(0.041)S(0.959)PNGK;VQAYEEPSVAS(0.063)S(0.937)PNGK;VQAYEEPSVAS(0.001)S(0.999)PNGK;VQAYEEPSVASS(1)PNGK;VQAYEEPSVAS(0.024)S(0.976)PNGK ;;;;; 302.9 6.60E-68 6373750000 5623840 5346200 4465480 7259000 6927060 5930140 8105620 7844000 5176410 9288500 TRUE FALSE FALSE 6874843.806 5971391.584 6117446.876 7655540.789 6237377.584 6240632.961 6373788.07 5920246.701 6215268.006 6973047.892 0.98591662 0.856353158 0.877298847 1.097875837 0.894498027 0.894964879 0.914060561 0.849018506 0.891327308 1 22.73335796 VQAYEEPSVASS(ph)PNGK ddPTM_HeLa_A486_30min_R1 6 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPSVAS(0.1)S(0.9)PNGK;VQAYEEPSVAS(0.163)S(0.837)PNGK;VQAYEEPSVAS(0.023)S(0.977)PNGK;VQAYEEPSVAS(0.248)S(0.752)PNGK;VQAYEEPSVAS(0.002)S(0.998)PNGK;VQAYEEPSVAS(0.025)S(0.975)PNGK ;;;;; 340.8 3.86E-91 6143226000 4618050 4955830 2796218 1957390 4717070 4927020 5964640 5653640 3890030 5984850 TRUE FALSE FALSE 4294348.543 4563111.982 3878988.495 4556902.841 4125411.096 4319174.367 4472223.984 4366429.59 4227220.933 4486204.605 0.957234215 1.017143083 0.864648146 1.015759031 0.919577117 0.962768029 0.996883642 0.973301482 0.942271097 1 22.09706399 -6.533277464 24.4443827 0.976451562 0.955149008 0.058769848 0.043734631 577.9196658 1358503.403 0.015938195 0.012360357 2.93E-07 6.533277464 -0.021302554 VQDGLSDIAEK(ac)FLK ddPTM_HeLa_A486_30min_R1 2 VQDGLSDIAEKFLK 14 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 0 1 ; VQDGLSDIAEK(1)FLK;VQDGLSDIAEK(1)FLK 239.19 1.94E-29 41835000 26398.2 34332.9 20138.1 11233.3 35368.1 36921.1 36343.7 36159.1 29249.4 34297.4 FALSE TRUE FALSE 24547.8225 31612.23597 27936.11164 26151.6901 30931.9031 32366.15007 27250.12186 27926.46228 31784.76154 25709.1078 0.954829809 1.229612331 1.086623147 1.017215 1.203149613 1.258937117 1.059940394 1.086247819 1.23632301 1 14.64999192 -4.239073925 23.73183084 1.13269557 0.954829427 0.254705267 0.090304743 4265.670146 4526135.995 0.022252302 1.032190622 5.77E-05 4.239073925 -0.177866143 VQDGLSDIAEK(ac)FLKK ddPTM_HeLa_A485_30min_R1 1 VQDGLSDIAEKFLKK 15 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 0 1 VQDGLSDIAEK(0.999)FLK(0.001)K 91.957 0.023377 11879000 4458.2 3713.9 3012.6 5077.6 5193.7 5023.3 8321.9 8507.5 5042.1 8800.1 FALSE TRUE FALSE 5449.911209 4148.208298 4127.086105 5354.976431 4676.596992 5286.312221 6543.858081 6421.022286 6054.003221 6606.397024 0.824944548 0.627907812 0.624710578 0.810574419 0.707889183 0.800180825 0.990533578 0.971940115 0.916385013 1 12.68964796 -6.604503297 3.188304053 0.968088155 0.715181853 0.768288194 0.064833632 0.121410504 2.483385913 0.027373454 0.020681566 2.49E-07 6.604503297 -0.252906301 VQDLFCSVGLNVNNPHFLIMQGR ddPTM_HeLa_A486_30min_R1 1 VQDLFCSVGLNVNNPHFLIMQGR 23 0 O95347-2;O95347 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 0 91.128 1.12E-05 0 5618.8 6373.5 5387.9 2132.9 8327.8 5836.8 7086.4 7300.4 5305.6 7247.9 FALSE FALSE TRUE 5224.951136 5868.440648 7474.239173 4965.498991 7283.24967 5116.71496 5313.307768 5638.258287 5765.49368 5432.978664 0.961710225 1.080151609 1.375716644 0.91395518 1.340562907 0.941788156 0.977973244 1.037783992 1.061203078 1 12.40752767 VQDLSAGGQGSLTDS(ph)GPERRPEGPGAQAPSSPR ddPTM_HeLa_A485_30min_R1 2 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 33 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLSAGGQGS(0.001)LT(0.001)DS(0.96)GPERRPEGPGAQAPS(0.023)S(0.016)PR;VQDLSAGGQGS(0.003)LT(0.014)DS(0.433)GPERRPEGPGAQAPS(0.275)S(0.275)PR ; 202.35 2.72E-29 2884000000 107545 287630 205645 63507 270740 251010 320400 535390 147412 73176 TRUE FALSE FALSE 131468.0142 321265.8265 281721.6431 66976.2266 243784.175 264152.4955 251943.9226 404084.763 176996.2363 54934.5699 2.393174543 5.848154031 5.128312529 1.219199981 4.437718824 4.808493011 4.586254575 7.355746368 3.221946337 1 15.74542669 -4.221570701 21.76945998 4.35478733 2.393145263 0.06984763 1.856620059 10205.40662 5571839.16 0.453313531 98.81478005 6.00E-05 4.221570701 -1.961642067 VQDLSAGGQGSLTDS(ph)GPERRPEGPGAQAPSSPR ddPTM_HeLa_A486_30min_R1 1 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 33 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLSAGGQGS(0.062)LT(0.09)DS(0.834)GPERRPEGPGAQAPS(0.007)S(0.007)PR 203.64 2.45E-29 574130000 113580 87388 80974 34952 140490 64351 102900 113960 46080 125010 TRUE FALSE FALSE 105618.6285 80463.05662 112329.3014 81370.02238 122868.4342 56412.02789 77153.33163 88013.79573 50074.2515 93706.68232 1.127119496 0.858669357 1.198733095 0.86834813 1.311202479 0.602006458 0.823349304 0.939247805 0.534372259 1 16.51586431 -6.271466383 24.96815525 0.778720296 1.056553798 0.390986111 0.182285327 740.1713449 1843088.987 0.05987766 0.053407686 5.35E-07 6.271466383 0.277833502 VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(ph)SPR ddPTM_HeLa_A485_30min_R1 4 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 33 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.826)S(0.174)PR;VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.5)S(0.5)PR;VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.5)S(0.5)PR;VQDLS(0.001)AGGQGS(0.001)LT(0.002)DS(0.029)GPERRPEGPGAQAPS(0.484)S(0.484)PR ;;; 169.04 8.32E-15 18194000000 817646 2361711 1656679 414708 1844568 2146332 2442446 3947850 1218971 598566 TRUE FALSE FALSE 999528.5319 2637892.557 2269553.502 437362.4479 1660916.333 2258710.625 1920597.459 2979633.598 1463607.299 449354.512 2.224365184 5.870404073 5.050697037 0.973312688 3.696227119 5.026567141 4.274125235 6.630919503 3.257132753 1 18.77749456 -6.108664619 9.917797294 4.402355315 3.623144326 0 1.852745588 1.704410489 144.8092549 0.608196855 0.60848878 7.79E-07 6.108664619 -0.779210989 VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(ph)SPR ddPTM_HeLa_A486_30min_R1 3 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 33 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.5)S(0.5)PR;VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.5)S(0.5)PR;VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.5)S(0.5)PR ;; 166.84 1.03E-14 7676800000 1619210 1173420 1299420 453429 1914490 829910 1287390 1410690 735960 1510230 TRUE FALSE FALSE 1505711.741 1080433.926 1802590.224 1055605.627 1674356.812 727524.1421 965271.4054 1089506.682 799753.6054 1132058.578 1.330065219 0.954397543 1.592311793 0.932465552 1.479037255 0.642655916 0.852669132 0.962411931 0.70645956 1 20.11051718 -6.265583863 24.99971102 0.831729418 1.241333721 0.493022303 0.215073611 307.2055463 1853071.42 0.069299561 0.063324001 5.43E-07 6.265583863 0.409604304 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 33 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLSAGGQGSLTDSGPERRPEGPGAQAPS(0.206)S(0.794)PR 216.42 2.92E-39 4811600000 124440 364180 223780 72442 263200 326810 351840 538350 190040 105770 TRUE FALSE FALSE 152121.2487 406767.6831 306565.5343 76399.32303 236994.8838 343921.2663 276666.5097 406318.8184 228179.2848 79403.48555 1.915800643 5.122793795 3.860857393 0.962165861 2.984691191 4.331311955 3.484311902 5.117140835 2.873668369 1 16.27691472 VQDT(ph)SNTGLGEDIIHQLSK ddPTM_HeLa_A485_30min_R1 1 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.634)S(0.363)NT(0.003)GLGEDIIHQLSK 233.22 7.55E-36 84526000 107850 123770 99598 114710 155470 113180 155340 167090 112210 163650 TRUE FALSE FALSE 131840.8604 138243.8248 136443.4448 120976.3168 139990.8609 119105.9298 122150.34 126110.9155 134729.5177 122855.0668 1.073141417 1.12525945 1.110604946 0.984707591 1.139479751 0.969483253 0.994263755 1.026501542 1.096654141 1 16.90659783 -5.238579982 24.48769593 1.0317916 1.105227707 0.300925837 0.050803413 768.3667733 823097.0753 0.013649138 0.023616581 5.77E-06 5.238579982 0.073436107 VQDT(ph)SNTGLGEDIIHQLSK ddPTM_HeLa_A486_30min_R1 4 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.458)S(0.458)NT(0.084)GLGEDIIHQLSK;VQDT(0.548)S(0.431)NT(0.02)GLGEDIIHQLSK;VQDT(0.654)S(0.342)NT(0.003)GLGEDIIHQLSK;VQDT(0.522)S(0.475)NT(0.003)GLGEDIIHQLSK ;;; 274.88 2.63E-69 1519925000 1043260 1273975 813089 333020.8 1240901 1178159 1347986 1346072 985890 1144128 TRUE FALSE FALSE 970132.8614 1173020.581 1127938.836 775289.2523 1085255.626 1032809.721 1010705.645 1039600.79 1071347.739 857630.9018 1.131177596 1.367745237 1.315179798 0.903989409 1.265411057 1.204258987 1.178485574 1.212177392 1.249194422 1 19.70999736 -10.12449719 4.124441231 0.999957046 1.203826643 0.208331788 0.118748494 16147631.14 19819251.84 5660.926544 0.028894906 7.51E-11 10.12449719 0.203869597 VQDTS(ph)NTGLGEDIIHQLSK ddPTM_HeLa_A485_30min_R1 3 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.054)S(0.841)NT(0.105)GLGEDIIHQLSK;VQDT(0.06)S(0.928)NT(0.012)GLGEDIIHQLSK;VQDT(0.272)S(0.716)NT(0.012)GLGEDIIHQLSK ;; 293.9 4.37E-79 1191140000 1189320 1257410 1127890 1315070 1709600 1233150 1686330 1833730 1267470 1792770 TRUE FALSE FALSE 1453880.131 1404453.161 1545143.446 1386908.944 1539386.221 1297715.827 1326031.819 1384004.842 1521839.603 1345865.432 1.080256685 1.04353164 1.148066819 1.030496 1.143789107 0.964224057 0.985263302 1.028338204 1.130751683 1 20.36010274 -6.261497491 25 1.02120833 1.086695288 0.280598888 0.053971026 7.793385949 3352833.574 0.018450586 0.017330818 5.48E-07 6.261497491 0.065486958 VQDTS(ph)NTGLGEDIIHQLSK ddPTM_HeLa_A486_30min_R1 2 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.064)S(0.894)NT(0.042)GLGEDIIHQLSK;VQDT(0.015)S(0.972)NT(0.013)GLGEDIIHQLSK ; 341.69 1.22E-102 1263522000 2133800 2475550 1733838 738801 2349230 2284850 2701650 2629550 1965800 2263990 TRUE FALSE FALSE 1984231.639 2279378.402 2405226.507 1719966.065 2054567.668 2002968.438 2025668.595 2030858.868 2136197.127 1697072.168 1.169208756 1.343124026 1.417280038 1.013490232 1.210654271 1.180249418 1.193625488 1.196683857 1.25875444 1 20.69461649 -14 0.162740226 0.205003532 1.275721539 0.29045165 0.102270683 179.622789 1.662430422 46.48225277 0.432109051 1.00E-14 14 1.070718007 VQDTSNT(ph)GLGEDIIHQLSK ddPTM_HeLa_A485_30min_R1 1 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.001)S(0.178)NT(0.821)GLGEDIIHQLSK 219.66 5.68E-34 71940000 68561 78485 73238 76276 96281 72373 105940 108120 77050 100810 TRUE FALSE FALSE 83812.15792 87663.13802 100331.7839 80442.76474 86694.92558 76162.33837 83305.05355 81603.40047 92513.22826 75679.92227 1.107455655 1.158340751 1.325738464 1.06293403 1.145547233 1.006374426 1.100755009 1.078270141 1.222427633 1 16.20762299 -5.362113832 21.37703935 1.090826587 1.193584542 0.283875902 0.079281852 15.89860738 3367.67849 0.021953768 0.032562721 4.34E-06 5.362113832 0.102757955 VQEHEDS(ph)GDS(ph)EVENEAK ddPTM_HeLa_A485_30min_R1 6 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK ;;;;; 270.49 1.29E-52 7532130000 5472440 4781340 3543220 8364820 6681940 6096620 9301000 9001720 4672190 10529170 TRUE FALSE FALSE 6689765.398 5340476.121 4854004.524 8821768.936 6016662.592 6415829.596 7313765.368 6794034.056 5609855.677 7904441.694 0.846329906 0.67562977 0.614085689 1.116052123 0.761174897 0.811673973 0.925272859 0.859521054 0.709709287 1 22.91423214 -12.70529081 0.024474419 2.010071627 5.38E-06 0.128426939 0.135576635 3745.374399 8.624713468 474.216319 261.9767288 1.97E-13 12.70529081 -2.010066242 VQEHEDS(ph)GDS(ph)EVENEAK ddPTM_HeLa_A486_30min_R1 4 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK ;;; 235.21 7.02E-42 6141000000 8084050 7985270 4404730 5036950 7722270 9474400 12484300 11220800 6802070 13803100 TRUE FALSE FALSE 7517399.841 7352488.123 6110359.419 11726274.15 6753670.889 8305544.857 9360596.095 8666068.788 7391678.904 10346713.92 0.726549502 0.710610942 0.590560391 1.133333177 0.652735829 0.802722963 0.904692656 0.837567256 0.714398694 1 23.30266931 -13.99995283 0.02872885 2.134434335 1.03E-07 0.177058638 0.143210701 2914.75286 6.294879151 358.2967133 150.5991814 1.00E-14 13.99995283 -2.134434232 VQEKPDS(ph)PGGSTQIQR ddPTM_HeLa_A485_30min_R1 2 VQEKPDSPGGSTQIQR 16 1 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 VQEKPDS(0.936)PGGS(0.032)T(0.032)QIQR;VQEKPDS(0.999)PGGSTQIQR ; 237.97 2.95E-40 175920000 296510 274810 209114 376210 361750 283780 438120 428140 238780 510330 TRUE FALSE FALSE 362467.6266 306946.639 286473.9706 396761.3997 325732.8998 298638.282 344512.0829 323137.9937 286700.9558 383114.1229 0.946108757 0.801188525 0.747751005 1.035621962 0.850224203 0.779502149 0.899241407 0.843451009 0.748343479 1 18.54741468 -5.976065169 24.99961811 0.843557257 0.876674714 0.014387144 0.096513517 1170.925003 1223010.155 0.029828714 0.033820658 1.06E-06 5.976065169 0.033117457 VQEKPDS(ph)PGGSTQIQR ddPTM_HeLa_A486_30min_R1 2 VQEKPDSPGGSTQIQR 16 1 M0R0P8;Q13459;Q13459-2;M0R300 M0R0P8;Q13459 MYO9B Unconventional myosin-IXb 1 0 VQEKPDS(1)PGGSTQIQR;VQEKPDS(1)PGGSTQIQR ; 162.79 9.46E-11 257755000 312110 320080 182475 171185 317030 351750 461780 424810 256180 468750 TRUE FALSE FALSE 290232.7007 294715.6951 253134.2068 398527.3312 277265.1412 308354.6613 346237.7598 328090.0365 278385.8887 351371.9489 0.825998494 0.838757038 0.720416663 1.134203605 0.789092988 0.877573359 0.985388164 0.93373998 0.792282621 1 18.4226395 VQESTKGPDEAK(ac)IK ddPTM_HeLa_A485_30min_R1 1 VQESTKGPDEAKIK 14 2 O43390-4;O43390;O43390-2;B4DT28;O43390-3 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 1 VQESTKGPDEAK(1)IK 102.38 0.0093937 55386000 10854 10047 7723.6 13525 15977 15658 24425 27620 12365 30181 FALSE TRUE FALSE 13268.43485 11221.90925 10580.88105 14263.8365 14386.27378 16477.82867 19206.39922 20846.15169 14846.54208 22657.43214 0.585610707 0.495286014 0.466993831 0.629543384 0.63494723 0.727259319 0.847686494 0.920058 0.655261461 1 14.46769674 -6.198070837 1.033769059 0.860366266 0.515915513 0.715744335 0.089424557 0.274949658 0.621295676 0.04722823 0.045552099 6.34E-07 6.198070837 -0.344450753 VQESTKGPDEAK(ac)IK ddPTM_HeLa_A486_30min_R1 1 VQESTKGPDEAKIK 14 2 O43390-4;O43390;O43390-2;B4DT28;O43390-3 O43390-4 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 1 VQESTKGPDEAK(1)IK 207.39 5.20E-15 55898000 108180 104800 43605 61495 124090 153480 202400 187080 115910 254770 FALSE TRUE FALSE 100597.1406 96495.26632 60490.02378 143163.4678 108525.4751 134545.1981 151757.3792 144485.9679 125957.1721 190973.9337 0.526758488 0.505279775 0.316744922 0.749649258 0.568273759 0.704521269 0.7946497 0.756574288 0.659551645 1 17.54301621 -5.688678315 0.125016525 1.192435429 2.44E-16 0.654490559 0.105308769 12.55119799 0.477133485 1.279121156 3.26200639 2.05E-06 5.688678315 -1.192435429 VQFDGTNS(ph)AFK ddPTM_HeLa_A486_30min_R1 1 VQFDGTNSAFK 11 0 Q8WWK9-6;Q8WWK9-5;Q8WWK9 Q8WWK9-6 CKAP2 Cytoskeleton-associated protein 2 1 0 VQFDGT(0.041)NS(0.959)AFK 128.54 4.97E-05 94761000 114910 144570 117640 69265 149250 148850 175560 159930 113600 170790 TRUE FALSE FALSE 106855.4024 133113.7467 163193.3585 161252.4205 130529.6733 130486.4004 131633.0311 123517.4302 123446.9395 128023.0723 0.834657382 1.039763726 1.274718342 1.259557496 1.019579291 1.019241282 1.02819772 0.964806015 0.964255405 1 16.96604431 -5.974375834 24.85115509 0.997851354 1.113731892 0.15868534 0.115818541 397.9282229 385921.9411 0.039202917 0.044450491 1.06E-06 5.974375834 0.115880538 VQFQGK(ac)K ddPTM_HeLa_A485_30min_R1 2 VQFQGKK 7 1 P05455 P05455 SSB Lupus La protein 0 1 ; VQFQGK(1)K;VQFQGK(1)K 134.66 0.0073971 153490000 162113 161634 166800 188216 248420 212260 347900 449450 384870 637770 FALSE TRUE FALSE 198174.4776 180535.6903 228506.2611 198497.7635 223686.4325 223373.6054 273568.3229 339221.6828 462109.8788 478785.6763 0.413910623 0.377069948 0.477262108 0.414585844 0.467195331 0.466541955 0.571379505 0.708504242 0.965170642 1 18.86902047 -7.459997806 1.205970096 1.020521021 0.429064223 0.975828523 0.033821643 0.061774682 0.159505614 0.029884289 0.010520714 3.47E-08 7.459997806 -0.591456798 down VQFQGK(ac)K ddPTM_HeLa_A486_30min_R1 2 VQFQGKK 7 1 P05455 P05455 SSB Lupus La protein 0 1 ; VQFQGK(1)K;VQFQGK(1)K 132.29 0.0086518 259990000 407110 513060 380510 199442 633370 541020 619290 632700 482510 617280 FALSE TRUE FALSE 378573.6913 472403.2571 527853.6624 464311.0552 553926.8287 474274.4531 464337.0918 488648.0217 524334.3553 462709.0702 0.818167863 1.020950933 1.140789529 1.003462186 1.197138471 1.024994935 1.003518456 1.056058879 1.133183655 1 18.81974585 -4.293085404 3.496433071 1.070649015 0.795630814 0.576708903 0.064359344 0.178688026 3.847083295 0.015801294 0.123502262 5.09E-05 4.293085404 -0.275018201 VQGGHS(ph)PDDHR ddPTM_HeLa_A485_30min_R1 1 VQGGHSPDDHR 11 0 A2AJT9-3;A2AJT9-2;A2AJT9 A2AJT9-3 CXorf23 Uncharacterized protein CXorf23 1 0 VQGGHS(1)PDDHR 73.834 0.0081331 444640000 241160 332340 186510 376560 220240 297230 284140 367890 299720 462820 TRUE FALSE FALSE 294805.21 371204.272 255507.8103 397130.5193 198312.1323 312792.5032 223431.1678 277664.4007 359871.0548 347447.4916 0.848488526 1.068375168 0.735385394 1.142994349 0.57076864 0.900258343 0.643064559 0.799155002 1.035756664 1 18.40643544 -3.983168122 18.43449928 0.864581159 0.815636504 0 0.180090424 33780.02712 4335.263794 0.041663131 47123.31093 0.000103952 3.983168122 -0.048944654 VQGLLENGDSVTS(ph)PEK ddPTM_HeLa_A485_30min_R1 2 VQGLLENGDSVTSPEK 16 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 VQGLLENGDSVT(0.029)S(0.971)PEK;VQGLLENGDSVT(0.096)S(0.904)PEK ; 251 2.20E-42 367550000 696210 524260 394170 1185250 698030 541100 907370 681610 475010 1430240 TRUE FALSE FALSE 851079.5126 585567.6465 539989.8858 1249997.206 628531.6823 569431.1593 713502.987 514444.0788 570340.15 1073707.49 0.792654909 0.545369807 0.502920852 1.164187843 0.585384463 0.530341052 0.664522688 0.479128705 0.531187642 1 20.03416958 -10.05876999 4.745012188 1.000011532 0.642910273 0.231343371 0.194684215 48688956.59 103213856.2 3763.268772 0.048053527 8.73E-11 10.05876999 -0.357101258 VQGLLENGDSVTS(ph)PEK ddPTM_HeLa_A486_30min_R1 2 VQGLLENGDSVTSPEK 16 0 P41229-5;P41229;P41229-4;P41229-3;P41229-2 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 VQGLLENGDSVT(0.007)S(0.993)PEK;VQGLLENGDSVT(0.015)S(0.985)PEK ; 174.59 1.73E-12 274930000 622090 562640 269020 321620 453690 666910 856840 690850 541480 1027280 TRUE FALSE FALSE 578484.7035 518054.3573 373191.7486 748747.6138 396783.9697 584633.4248 642449.5693 533558.5361 588415.9224 770042.4015 0.751237467 0.67276082 0.484637921 0.972345954 0.515275482 0.75922238 0.834304147 0.692895008 0.764134444 1 19.55457836 -14 0.17651198 2.173617915 0.650575936 0.310601018 0.13227287 159.4949826 1.524718574 65.29740529 0.418432284 1.00E-14 14 -1.523041979 VQGLLENGDSVTS(ph)PEKVAPEEGSGKR ddPTM_HeLa_A485_30min_R1 2 VQGLLENGDSVTSPEKVAPEEGSGKR 26 2 P41229-5;P41229 P41229-5 KDM5C Lysine-specific demethylase 5C 1 0 VQGLLENGDS(0.004)VT(0.144)S(0.852)PEKVAPEEGSGKR;VQGLLENGDSVT(0.126)S(0.874)PEKVAPEEGSGKR ; 104.48 0.00026901 427460000 137966 144827 83986 208075 231445 215032 356900 417200 128829 293540 TRUE FALSE FALSE 168656.0607 161763.2578 115055.9163 219441.6104 208401.5231 226290.743 280645.3994 314881.0459 154683.7986 220365.8802 0.765345618 0.734066715 0.522113116 0.995805749 0.945706853 1.02688648 1.273542888 1.428901087 0.701940784 1 17.74954134 -5.642765202 1.581418558 1.116880001 0.682907656 0.418605417 0.197186818 0.348015203 1.791967318 0.069947681 0.105456402 2.28E-06 5.642765202 -0.433972345 VQGS(ph)PLKK ddPTM_HeLa_A485_30min_R1 4 VQGSPLKK 8 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VQGS(1)PLKK;VQGS(1)PLKK;VQGS(1)PLKK;VQGS(1)PLKK ;;; 78.692 0.0059693 6350820000 5321110 3243610 2228010 8286410 5007030 4393060 7399680 6830330 3714920 10652700 TRUE FALSE FALSE 6504772.562 3622921.974 3052243.614 8739075.596 4508512.512 4623073.829 5818677.918 5155180.858 4460470.369 7997177.938 0.813383498 0.453025055 0.381665087 1.092769933 0.563762936 0.578088154 0.727591403 0.644625004 0.557755549 1 22.93105956 -10.97723956 2.849490726 1.307012914 0.643515512 0.238322621 0.18989547 65539236.39 20940499.51 132273628.1 0.0476032 1.05E-11 10.97723956 -0.663497402 VQGS(ph)PLKK ddPTM_HeLa_A486_30min_R1 5 VQGSPLKK 8 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VQGS(1)PLKK;VQGS(1)PLKK;VQGS(1)PLKK;VQGS(1)PLKK;VQGS(1)PLKK ;;;; 70.488 0.009644 8910510000 9168650 7730500 3184490 4523850 6466740 9318680 12151590 10785890 5857240 12676480 TRUE FALSE FALSE 8525974.982 7117907.026 4417609.812 10531751.42 5655621.169 8169036.007 9111133.656 8330178.301 6364950.279 9502206.898 0.897262612 0.749079356 0.46490356 1.108347938 0.595190278 0.859698815 0.958843956 0.876657222 0.669839159 1 23.17983119 -6.486672766 24.7452456 0.872230171 0.761078549 0.086961129 0.178699034 1402.238548 958371.5757 0.061474571 0.054195342 3.26E-07 6.486672766 -0.111151622 VQIKVEEKEDETEES(ph)S(ph)SEEEEEVEDK ddPTM_HeLa_A485_30min_R1 1 VQIKVEEKEDETEESSSEEEEEVEDK 26 2 A0A2R8YDA3;Q8TDI8 A0A2R8YDA3 TMC1 Transmembrane channel-like protein 1 2 0 VQIKVEEKEDET(0.49)EES(0.5)S(0.51)S(0.5)EEEEEVEDK 48.947 0.028542 455760000 33292 163960 104470 13699 73211 123610 32745 102800 100860 13273 TRUE FALSE FALSE 40697.69054 183133.6957 143117.8004 14447.34168 65921.85578 130082.0285 25748.76325 77588.13882 121101.6769 9964.285371 4.084356181 18.37900952 14.36307723 1.449912477 6.615813711 13.05482768 2.584105361 7.786623518 12.15357372 1 13.28255062 -5.235231438 24.78461016 6.790663474 12.88583461 0.214776259 5.085242124 1014.060942 958986.5181 1.345579557 2.329646675 5.82E-06 5.235231438 6.095171133 VQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_A485_30min_R1 4 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 VQIPVSRPDPEPVS(1)DNEEDS(0.942)Y(0.058)DEEIHDPR;VQIPVS(0.002)RPDPEPVS(0.997)DNEEDS(0.592)Y(0.409)DEEIHDPR;VQIPVS(0.002)RPDPEPVS(0.997)DNEEDS(0.723)Y(0.278)DEEIHDPR;VQIPVS(0.001)RPDPEPVS(0.96)DNEEDS(0.543)Y(0.496)DEEIHDPR ;;; 181.96 5.36E-20 14958700000 1610382 2044027 1884214 1656218 2483511 2040932 2335315 2520132 2107951 2180540 TRUE FALSE FALSE 1968605.92 2283058.177 2581263.167 1746692.996 2236243.925 2147792.044 1836355.872 1902065.676 2530997.43 1636971.508 1.202590217 1.394684126 1.576852838 1.067027121 1.36608604 1.312052185 1.121800754 1.161941834 1.546146294 1 20.64259778 -5.264867992 24.98538892 1.236960153 1.391706559 0.163678194 0.170844431 571.717649 4166293.854 0.046659588 0.07247667 5.43E-06 5.264867992 0.154746406 VQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_A486_30min_R1 3 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 VQIPVSRPDPEPVS(0.999)DNEEDS(0.515)Y(0.485)DEEIHDPR;VQIPVS(0.042)RPDPEPVS(0.958)DNEEDS(0.639)Y(0.361)DEEIHDPR;VQIPVSRPDPEPVS(1)DNEEDS(0.714)Y(0.286)DEEIHDPR ;; 155.1 1.23E-09 7126480000 901590 1254020 1040140 415839 1454150 1091590 1156030 1314610 1003210 1091740 TRUE FALSE FALSE 838393.1968 1154646.888 1442910.064 968094.2073 1271756.948 956920.7243 866779.0668 1015302.001 1090169.051 818361.198 1.024478188 1.410925751 1.763170184 1.182966897 1.554028894 1.169313412 1.059164424 1.240652664 1.332136779 1 19.64237822 -6.293655305 22.4949739 1.168975983 1.397987334 0.234866892 0.203957922 303.0067848 211574.4858 0.07198411 0.063494195 5.09E-07 6.293655305 0.22901135 VQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_HeLa_A485_30min_R1 3 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 VQIPVS(0.001)RPDPEPVS(0.994)DNEEDS(0.332)Y(0.673)DEEIHDPR;VQIPVS(0.001)RPDPEPVS(0.999)DNEEDS(0.213)Y(0.787)DEEIHDPR;VQIPVS(0.001)RPDPEPVS(0.999)DNEEDS(0.487)Y(0.513)DEEIHDPR ;; 127.02 2.54E-05 3265970000 293040 408351 404120 363034 482918 372726 473628 482795 402644 470097 TRUE FALSE FALSE 358225.737 456104.0973 553620.8048 382865.6282 434836.9883 392241.357 372433.5086 364388.7693 483450.9575 352910.4694 1.015061235 1.292407386 1.568728765 1.084880335 1.232145334 1.111447211 1.055320091 1.032524679 1.369896899 1 18.4289427 VQIPVSRPDPEPVS(ph)DNEEDSY(ph)DEEIHDPR ddPTM_HeLa_A486_30min_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 A0A087X0K9;G5E9E7;Q07157-2;H0YKB1;G3V1L9;Q07157 A0A087X0K9;G3V1L9 TJP1 Tight junction protein ZO-1 2 0 VQIPVSRPDPEPVS(1)DNEEDS(0.225)Y(0.775)DEEIHDPR 161.62 1.06E-12 2605200000 554600 689490 616460 249190 801490 635360 705950 741390 568700 678060 TRUE FALSE FALSE 515725.404 634852.3013 855169.8214 580126.9134 700959.6506 556975.7431 529313.8432 572591.6814 617995.3739 508269.3626 1.014669468 1.249046958 1.682513022 1.141376908 1.379110571 1.09582789 1.041404189 1.126551635 1.215881616 1 18.95523375 -6.274703588 23.62832208 1.100434454 1.304060423 0.250357736 0.170206188 563.2471476 1003341.464 0.060853054 0.054029545 5.31E-07 6.274703588 0.203625969 VQIS(ph)PDSGGLPER ddPTM_HeLa_A485_30min_R1 3 VQISPDSGGLPER 13 0 A0A087WTP3;Q92945;M0QXW7;M0QYH3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 VQIS(0.999)PDS(0.001)GGLPER;VQIS(0.99)PDS(0.01)GGLPER;VQIS(0.93)PDS(0.07)GGLPER ;; 225.7 1.46E-27 1715390000 974660 1222430 1161250 955430 1452510 1314920 1694930 1949830 1149300 1301260 TRUE FALSE FALSE 1191469.754 1365382.555 1590844.699 1007622.722 1307893.004 1383767.178 1332794.359 1471631.135 1379953.968 976879.8299 1.219668702 1.39769756 1.628495798 1.031470495 1.338847384 1.416517299 1.364338088 1.506460764 1.41261384 1 19.89782158 -5.206270275 24.99976269 1.3265348 1.41352788 0.066647961 0.180884455 1148.961117 520647.3221 0.049058093 0.084971083 6.22E-06 5.206270275 0.08699308 VQIS(ph)PDSGGLPER ddPTM_HeLa_A486_30min_R1 4 VQISPDSGGLPER 13 0 A0A087WTP3;Q92945;M0QXW7;M0QYH3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 VQIS(1)PDSGGLPER;VQIS(0.984)PDS(0.016)GGLPER;VQIS(0.955)PDS(0.045)GGLPER;VQIS(0.987)PDS(0.013)GGLPER ;;; 260.08 2.36E-41 2533810000 2106730 2353190 2057380 728790 2762350 2051600 2324100 2516650 1982370 2267900 TRUE FALSE FALSE 1959059.106 2166714.654 2854052.635 1696659.951 2415870.305 1798494.451 1742585.598 1943663.733 2154203.428 1700003.078 1.152385623 1.274535724 1.678851451 0.998033458 1.421097606 1.057935997 1.025048496 1.143329537 1.267176192 1 20.69710593 -6.273840133 24.65585415 1.103053036 1.307007347 0.249875072 0.178608674 969.8103625 1928223.91 0.062175361 0.055234779 5.32E-07 6.273840133 0.203954312 VQISPDS(ph)GGLPER ddPTM_HeLa_A485_30min_R1 1 VQISPDSGGLPER 13 0 A0A087WTP3;Q92945;M0QXW7;M0QYH3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 VQIS(0.499)PDS(0.501)GGLPER 213.73 2.17E-22 884980000 257150 360040 365330 258360 405270 321450 376330 419400 285960 331200 TRUE FALSE FALSE 314352.1303 402143.5461 500480.7696 272473.5526 364919.8958 338280.6249 295924.0212 316541.4924 343349.549 248637.9353 1.264296737 1.617386123 2.012889823 1.095864765 1.467675861 1.360535047 1.190180496 1.27310216 1.380921816 1 17.9236869 -5.284129906 24.99423988 1.274847255 1.630110534 0.397882184 0.212373755 809.9323078 892160.9114 0.059483601 0.088298049 5.20E-06 5.284129906 0.355263279 VQLTTCIHHIIK ddPTM_HeLa_A486_30min_R1 1 VQLTTCIHHIIK 12 0 O95373;E9PLB2 O95373 IPO7 Importin-7 0 0 80.312 0.011106 6176200 23892 25306 24783 7539.5 28673 26603 27836 27737 26372 27513 FALSE FALSE TRUE 22217.29418 23300.6604 34379.64131 17552.33703 25076.56497 23320.99234 20871.13838 21421.89059 28657.94619 20623.56572 1.077277057 1.129807557 1.667007625 0.851081586 1.215918009 1.130793416 1.012004358 1.038709352 1.389572811 1 14.33200617 -5.301544563 24.99963289 1.096319406 1.275209862 0.173938136 0.198786765 972.4874054 606199.7023 0.055198901 0.081874361 4.99E-06 5.301544563 0.178890456 VQMPS(ph)FK ddPTM_HeLa_A486_30min_R1 1 VQMPSFK 7 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VQMPS(1)FK 91.867 0.0063977 150990000 173050 157480 91704 117680 146620 198440 240400 397610 190290 352530 TRUE FALSE FALSE 160920.0886 145000.7113 127214.2447 273964.9872 128229.5524 173958.4904 180249.3773 307082.8828 206784.4904 264254.1934 0.608959451 0.548716784 0.481408613 1.036747927 0.485250776 0.658299829 0.682106024 1.16207383 0.782521131 1 18.01156684 -7.137624936 6.461842807 0.977502681 0.639719634 0.455445224 0.170039514 0.217708122 10.50752821 0.079235936 0.045425124 7.28E-08 7.137624936 -0.337783048 VQMTS(ph)PSSTGS(ph)PMFK ddPTM_HeLa_A486_30min_R1 1 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 VQMT(0.184)S(0.807)PS(0.021)S(0.022)T(0.047)GS(0.919)PMFK 101.08 0.0011071 102830000 175410 173630 116390 83406 197450 189720 238730 229780 131470 254010 TRUE FALSE FALSE 163114.6648 159870.9265 161459.325 194173.3831 172683.9799 166314.2753 178997.229 177464.1101 142865.9255 190404.2427 0.856675579 0.839639518 0.847981761 1.019795465 0.906933467 0.873479882 0.940090549 0.932038633 0.750329528 1 17.5387061 -5.073984179 24.99997675 0.914935521 0.847063924 0.172902888 0.069413333 234.5812493 79266.28347 0.018494236 0.032032973 8.43E-06 5.073984179 -0.067871597 VQMTS(ph)PSSTGSPMFK ddPTM_HeLa_A485_30min_R1 1 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 VQMT(0.043)S(0.586)PS(0.112)S(0.193)T(0.064)GS(0.002)PMFK 126.63 2.49E-05 319850000 511330 609640 501140 532230 721240 580500 672910 764430 504810 604420 TRUE FALSE FALSE 625073.5944 680932.0948 686532.5402 561304.3772 649430.8132 610894.0824 529137.2813 576952.3439 606120.7366 453749.2175 1.377575035 1.500679381 1.513021981 1.237036573 1.431254949 1.346325368 1.16614478 1.27152251 1.33580558 1 18.79153563 -12.56656199 0.076720219 5.38E-13 1.782148614 0.652944913 0.087736387 119.9745874 0.871863097 23.50893649 3.96737769 2.71E-13 12.56656199 1.782148614 VQMTSPSSTGS(ph)PMFK ddPTM_HeLa_A485_30min_R1 4 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 VQMTSPS(0.001)S(0.006)T(0.004)GS(0.989)PMFK;VQMTSPS(0.016)S(0.018)T(0.005)GS(0.961)PMFK;VQMTSPS(0.015)S(0.01)T(0.045)GS(0.93)PMFK;VQMTSPS(0.142)S(0.14)T(0.039)GS(0.679)PMFK ;;; 189.55 4.49E-18 615960000 622350 660520 510820 754340 880500 751350 987420 1164720 523510 885390 TRUE FALSE FALSE 760789.6104 737762.0682 699793.575 795547.6841 792834.3284 790689.5242 776449.6505 879070.5938 628573.6551 664678.5674 1.144597777 1.109953148 1.052830058 1.196890833 1.192808626 1.189581796 1.168158097 1.322549932 0.945680643 1 19.34229731 -2.714816734 18.2341804 1.144497923 4.170592091 0 0.104583999 0 0 0.02273204 0 0.001928338 2.714816734 3.026094168 VQMTSPSSTGS(ph)PMFK ddPTM_HeLa_A486_30min_R1 4 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 VQMTSPS(0.001)S(0.012)T(0.02)GS(0.967)PMFK;VQMTSPS(0.019)S(0.011)T(0.012)GS(0.958)PMFK;VQMTSPS(0.086)S(0.053)T(0.053)GS(0.807)PMFK;VQMTSPS(0.004)S(0.022)T(0.014)GS(0.961)PMFK ;;; 157.84 1.16E-08 699749000 791220 766250 457833 316720 759820 806650 983410 943170 670330 971420 TRUE FALSE FALSE 735759.5639 705529.5594 635118.1988 737340.1661 664516.2906 707133.7244 737350.4165 728430.7803 728434.7441 728170.1091 1.01042264 0.968907609 0.872211302 1.01259329 0.912583862 0.971110618 1.012607366 1.000357981 1.000363425 1 19.47391599 -6.599901985 5.086717735 1.002882421 0.953497298 0.249023857 0.03923145 0.292159027 13.5903582 0.01506478 0.011583265 2.51E-07 6.599901985 -0.049385123 VQNHLPASGPTQPPVVSS(ph)TNEGSPSPPEPTGK ddPTM_HeLa_A486_30min_R1 1 VQNHLPASGPTQPPVVSSTNEGSPSPPEPTGK 32 0 O43294-2;O43294;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 VQNHLPASGPTQPPVVS(0.162)S(0.748)T(0.069)NEGS(0.02)PSPPEPTGK 229.26 1.61E-39 683990000 581850 574630 432970 182810 656890 616850 751470 755990 461300 617240 TRUE FALSE FALSE 541065.3197 529094.226 600627.5793 425590.9187 574496.7309 540749.3187 563444.2578 583867.5801 501285.8554 462679.0864 1.169418146 1.143544719 1.298151563 0.919840406 1.2416743 1.168735166 1.217786311 1.261927754 1.083441785 1 18.81965236 -7.995598335 9.225930592 1.000004301 1.175024333 0.257372918 0.097552772 0.130945034 143.5887711 0.091144744 0.023553448 1.01E-08 7.995598335 0.175020032 VQNHLPASGPTQPPVVSSTNEGS(ph)PSPPEPTGK ddPTM_HeLa_A485_30min_R1 3 VQNHLPASGPTQPPVVSSTNEGSPSPPEPTGK 32 0 O43294-2;O43294;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 VQNHLPASGPTQPPVVS(0.001)S(0.003)TNEGS(0.988)PS(0.007)PPEPTGK;VQNHLPASGPTQPPVVS(0.012)S(0.059)TNEGS(0.926)PS(0.003)PPEPTGK;VQNHLPASGPTQPPVVSST(0.003)NEGS(0.858)PS(0.138)PPEPT(0.001)GK ;; 342.8 1.55E-128 3891720000 1457150 1469430 1101200 1401240 2087460 1621260 2132810 2246610 1444710 2176120 TRUE FALSE FALSE 1781287.99 1641267.056 1508579.705 1477786.193 1879625.153 1706146.667 1677117.72 1695625.375 1734650.045 1633653.333 1.090370861 1.00466055 0.923439309 0.904589832 1.150565494 1.04437498 1.026605637 1.037934635 1.06182261 1 20.63967044 -5.750402447 24.99999565 1.053641277 0.97837728 0.265571365 0.059243806 312.1862764 707136.636 0.018390329 0.023510887 1.78E-06 5.750402447 -0.075263997 VQNHLPASGPTQPPVVSSTNEGS(ph)PSPPEPTGK ddPTM_HeLa_A486_30min_R1 2 VQNHLPASGPTQPPVVSSTNEGSPSPPEPTGK 32 0 O43294-2;O43294;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 VQNHLPASGPTQPPVVS(0.133)S(0.097)T(0.168)NEGS(0.588)PS(0.013)PPEPTGK;VQNHLPASGPTQPPVVSSTNEGS(0.91)PS(0.09)PPEPTGK ; 258.41 9.66E-64 2085310000 1004660 1155540 800040 358590 1321140 1152390 1403400 1407130 948310 1147090 TRUE FALSE FALSE 934238.5221 1063970.802 1109836.914 834815.6421 1155430.302 1010219.838 1052254.476 1086757.216 1030510.274 859851.1977 1.086511858 1.237389452 1.290731369 0.970883851 1.343756112 1.174877515 1.223763459 1.263889868 1.198475128 1 19.71372749 -9.560606243 4.971699906 0.999999987 1.202239043 0.260070645 0.100517896 30602412.82 103248535.1 9.857206829 0.023848461 2.75E-10 9.560606243 0.202239056 VQNHLPASGPTQPPVVSSTNEGSPS(ph)PPEPTGK ddPTM_HeLa_A485_30min_R1 1 VQNHLPASGPTQPPVVSSTNEGSPSPPEPTGK 32 0 O43294-2;O43294;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 VQNHLPASGPTQPPVVSSTNEGSPS(1)PPEPTGK 182.37 5.52E-21 529400000 170830 171760 137900 183760 225560 190370 253940 292650 180200 266450 TRUE FALSE FALSE 208830.5441 191845.8379 188914.9485 193798.3435 203102.4544 200337.4788 199683.6445 220877.1286 216364.4871 200028.9186 1.044001765 0.959090511 0.944438183 0.968851628 1.015365457 1.001542578 0.998273879 1.10422598 1.081666034 1 17.60984906 -7.147475067 5.71651181 1.06923835 0.98697279 0.443099969 0.036605683 0.190744734 8.272089507 0.017795059 0.010139837 7.12E-08 7.147475067 -0.08226556 VQNLLGHYLIHGFR ddPTM_HeLa_A485_30min_R1 2 VQNLLGHYLIHGFR 14 0 E9PDU5;A0A087X295;Q9NNW5;V9GZ65;C9JFP6;V9GYU1;C9K020 E9PDU5 WDR6 WD repeat-containing protein 6 0 0 ; ; 179.67 1.13E-10 52331000 65305 69204 81057 69633 95957 74552 95050 90234 68843 96756 FALSE FALSE TRUE 79831.87195 77296.80581 111043.3574 73436.87447 86403.18415 78455.42744 74741.79101 68103.97002 82659.15863 72636.50986 1.099059854 1.064159139 1.528754033 1.011018765 1.189528301 1.080110093 1.028983787 0.937599702 1.137983623 1 16.14840726 -6.294273773 1.425543393 1.019175615 1.194766032 0.21274158 0.13851397 0.644336474 2.631077018 0.0646925 0.056957389 5.08E-07 6.294273773 0.175590417 VQNLLGHYLIHGFR ddPTM_HeLa_A486_30min_R1 2 VQNLLGHYLIHGFR 14 0 E9PDU5;A0A087X295;Q9NNW5;V9GZ65;C9JFP6;V9GYU1;C9K020 E9PDU5 WDR6 WD repeat-containing protein 6 0 0 ; ; 168.61 6.83E-08 59174000 93776 107834 91167 37325 130017 109257 127934 121037 104618 122145 FALSE FALSE TRUE 87202.78666 99288.84112 126469.3039 86894.4863 113709.0555 95777.98218 95923.56005 93479.51732 113686.3725 91559.09697 0.952420781 1.084423552 1.381286056 0.949053553 1.241919801 1.046078275 1.047668263 1.020974654 1.241672059 1 16.48241561 VQPQWS(ph)PPAGTQPCR ddPTM_HeLa_A486_30min_R1 2 VQPQWSPPAGTQPCR 15 0 C9JLN0;E9PRS8;E9PLP0;B4DKY1;P49589-2;P49589;P49589-3 C9JLN0 CARS "Cysteine--tRNA ligase, cytoplasmic" 1 0 VQPQWS(1)PPAGTQPCR;VQPQWS(1)PPAGTQPCR ; 179.14 1.08E-17 211090000 337010 412070 343820 143846 448790 410220 455920 477440 357720 477580 TRUE FALSE FALSE 313387.3393 379416.0725 476956.3118 334880.7576 392498.5734 359611.2272 341843.9938 368737.3344 388727.4576 357990.8595 0.87540598 1.059848492 1.332314218 0.935444995 1.096392723 1.004526282 0.954895872 1.030018853 1.085858612 1 18.44956323 VQPSGGPAADQDVLGEES(ph)PLGKPAMLHLPSEQGAPETLQR ddPTM_HeLa_A485_30min_R1 1 VQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQR 40 1 C9J2V2 C9J2V2 IKBKG 1 0 VQPSGGPAADQDVLGEES(1)PLGKPAMLHLPSEQGAPETLQR 149.39 1.36E-10 440490000 34448 41088 36397 50432 51365 36307 55858 61467 42925 64259 TRUE FALSE FALSE 42110.83876 45892.88418 49861.76491 53186.97246 46250.92025 38207.97838 43923.48198 46392.12187 51539.65377 48240.4139 0.872936929 0.951336866 1.033609807 1.102539721 0.958758777 0.792032557 0.910512129 0.961685817 1.068391616 1 15.55795467 -7.659634974 6.52143949 1.033175849 0.949274276 0.155578492 0.080707421 0.445631256 24.05099559 0.063251706 0.023153952 2.19E-08 7.659634974 -0.083901573 VQPTHVIHLAAMVGGLFR ddPTM_HeLa_A485_30min_R1 4 VQPTHVIHLAAMVGGLFR 18 0 E9PLH9;E9PP14;A0A0J9YX13;E9PKL9;Q13630 E9PLH9 TSTA3 GDP-L-fucose synthase 0 0 ;;; ;;; 195.27 1.67E-22 80273000 52575.5 64536 65389 54051.7 65035 52204.7 72903 74601 45535.4 85897 FALSE FALSE TRUE 64270.73859 72082.92381 89579.11216 57004.4075 58559.88705 54938.05737 57326.67849 56304.98778 54673.9371 64484.45872 0.996685711 1.117834053 1.389158162 0.884002264 0.908124038 0.851958107 0.888999918 0.873155934 0.847862232 1 15.97666388 -5.301600585 24.3366618 0.886855969 1.162886784 0.619199789 0.098510913 230.648701 139766.6564 0.027626555 0.040977627 4.99E-06 5.301600585 0.276030815 VQPTHVIHLAAMVGGLFR ddPTM_HeLa_A486_30min_R1 3 VQPTHVIHLAAMVGGLFR 18 0 E9PLH9;E9PP14;A0A0J9YX13;E9PKL9;Q13630 E9PLH9 TSTA3 GDP-L-fucose synthase 0 0 ;; ;; 170.61 6.39E-15 57048000 52640 54042 45574 23829.7 62151 49750 59805 57608 45940 65480 FALSE FALSE TRUE 48950.20783 49759.5151 63221.47331 55476.74589 54355.44204 43612.35082 44841.15645 44491.91597 49922.11619 49083.3818 0.997286781 1.013775198 1.288042327 1.130255167 1.107410289 0.888535982 0.913571046 0.906455797 1.01708795 1 15.58294703 -6.249442838 23.30930001 0.937311202 1.1134657 0.488329147 0.082716493 264.0250513 513000.6747 0.029007993 0.028752512 5.63E-07 6.249442838 0.176154498 VQPYLDDFQK(ac)K ddPTM_HeLa_A485_30min_R1 2 VQPYLDDFQKK 11 1 F8W696;P02647 F8W696 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I 0 1 ; VQPYLDDFQK(1)K;VQPYLDDFQK(1)K 112.75 0.0088078 104770000 89975 97429 103192 65531 235390 65557 103265 83643 76360 120989 FALSE TRUE FALSE 109989.6283 108822.474 141367.015 69110.7926 211953.7451 68989.46315 81201.58915 63129.4231 91684.75158 90828.66894 1.210957175 1.19810711 1.556414033 0.760891835 2.333555557 0.75955603 0.894008358 0.695038514 1.009425247 1 16.47086012 VQPYLDDFQK(ac)K ddPTM_HeLa_A486_30min_R1 1 VQPYLDDFQKK 11 1 F8W696;P02647 F8W696 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I 0 1 VQPYLDDFQK(1)K 111.06 0.0096828 30007000 70362 47514 55895 14230 70293 42204 54346 48280 42734 35780 FALSE TRUE FALSE 65429.98715 43748.8176 77539.04092 33128.15914 61476.19648 36997.29958 40748.05599 37287.69794 46438.21753 26820.45511 2.439555439 1.631173573 2.891041207 1.235182588 2.292138453 1.379443392 1.519290251 1.390270888 1.731447782 1 14.7110461 -1 0.105584256 0.625993861 5.751129516 0.400389659 0.440309801 115.2770277 0.85725518 4.39730213 85.825734 0.1 1 5.125135655 VQQSSESSTSS(ph)PSQHEATPGAR ddPTM_HeLa_A485_30min_R1 1 VQQSSESSTSSPSQHEATPGAR 22 0 O75152;E9PQ61;E9PBY7;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 VQQSSES(0.001)S(0.088)T(0.018)S(0.147)S(0.746)PSQHEATPGAR 203.47 5.11E-27 491210000 39262 60602 79850 16271 80699 39437 51133 55364 53598 35303 TRUE FALSE FALSE 47995.69645 67688.87673 109389.8378 17159.84353 72664.32421 41501.86034 40208.01683 41785.89219 64354.62697 26502.6118 1.810979869 2.554045512 4.127511607 0.647477451 2.741779744 1.565953599 1.517134127 1.576670726 2.428237166 1 14.69384692 -5.270145134 24.99952836 1.701387416 2.803165685 0.326703188 0.77984809 768.9961052 2208255.187 0.213792711 0.322624314 5.37E-06 5.270145134 1.101778268 VQQSSESSTSS(ph)PSQHEATPGAR ddPTM_HeLa_A486_30min_R1 3 VQQSSESSTSSPSQHEATPGAR 22 0 O75152;E9PQ61;E9PBY7;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 VQQSSESSTS(0.004)S(0.992)PS(0.004)QHEATPGAR;VQQSS(0.001)ES(0.001)S(0.016)T(0.025)S(0.17)S(0.787)PSQHEATPGAR;VQQSS(0.001)ES(0.001)S(0.015)T(0.005)S(0.204)S(0.737)PS(0.036)QHEATPGAR ;; 223.87 3.82E-36 315190000 241998 281937 273144 19137.4 352389 202403 220492 226188 235820 127798 TRUE FALSE FALSE 225035.1899 259595.2853 378912.6719 44552.83435 308189.0857 177432.5757 165322.5695 174689.93 256261.0675 95796.54897 2.349094955 2.709860513 3.955389582 0.465077655 3.217120961 1.852181291 1.725767486 1.82355139 2.675055315 1 16.54768606 -7.011733259 0.096506008 3.39E-11 4.121321835 0.183639813 0.883249162 22.99282576 1.776405983 32.27102422 38.69620736 9.73E-08 7.011733259 4.121321835 VQRPHS(ph)S(ph)PPRFVTVEELLETAR ddPTM_HeLa_A485_30min_R1 1 VQRPHSSPPRFVTVEELLETAR 22 2 E9PJ55;Q9NUJ3;R4GNF5;E9PP52;E9PMB0 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 2 0 VQRPHS(0.92)S(0.934)PPRFVT(0.146)VEELLETAR 62.683 0.010526 23539000 10831 11686 11838 9052.8 19880 13995 13548 21767 10925 15368 TRUE FALSE FALSE 13240.31858 13052.57605 16217.36882 9547.331541 17900.6774 14727.75656 10653.35912 16428.60912 13117.54729 11537.04043 1.147635623 1.131362599 1.405678425 0.827537322 1.551583139 1.276562794 0.923404853 1.423988173 1.136994134 1 13.49398556 -8.011064119 24.3637293 0.999999965 1.210636565 0.0862149 0.210635143 944.0754775 2078904.919 0.192955025 0.049820773 9.75E-09 8.011064119 0.2106366 VQRPHS(ph)SPPR ddPTM_HeLa_A485_30min_R1 3 VQRPHSSPPR 10 1 E9PJ55;Q9NUJ3;R4GNF5;E9PP52;E9PMB0 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 1 0 VQRPHS(0.5)S(0.5)PPR;VQRPHS(0.579)S(0.421)PPR;VQRPHS(0.5)S(0.5)PPR ;; 81.239 0.0033279 936330000 177461 333612 407651 139782 451547 234866 293517 302887 323833 197675 TRUE FALSE FALSE 216936.5872 372625.0214 558458.0687 147417.9367 406589.3952 247163.2206 230804.6951 228603.4883 388823.3127 148398.2604 1.461853977 2.510979713 3.763238646 0.993393968 2.739852839 1.665539878 1.555305935 1.540472831 2.620133899 1 17.17911465 -5.959015207 1.219916253 1.713080981 2.415580857 0.107512395 0.797346175 1.048114234 3.275339576 0.348753405 0.414801132 1.10E-06 5.959015207 0.702499876 VQRPHS(ph)SPPR ddPTM_HeLa_A486_30min_R1 2 VQRPHSSPPR 10 1 E9PJ55;Q9NUJ3;R4GNF5;E9PP52;E9PMB0 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 1 0 VQRPHS(0.911)S(0.089)PPR;VQRPHS(0.922)S(0.078)PPR ; 74.46 0.0066432 40623000 20716.4 24579 37462 2058.42 37718 16661.3 16784.4 19187.1 27130 8422.4 TRUE FALSE FALSE 19264.28734 22631.27052 51968.28967 4792.105787 32987.05673 14605.79821 12584.76559 14818.61618 29481.65024 6313.376219 3.051344743 3.584654191 8.231457759 0.759040111 5.224947094 2.313468689 1.993349542 2.347177749 4.669712246 1 12.62419601 -5.845405211 1.300032416 2.595530089 4.479820394 0.132835437 1.983634224 0.915711452 3.248722909 0.797086644 1.044668651 1.43E-06 5.845405211 1.884290305 VQRPHS(ph)SPPRFVTVEELLETAR ddPTM_HeLa_A485_30min_R1 1 VQRPHSSPPRFVTVEELLETAR 22 2 E9PJ55;Q9NUJ3;R4GNF5;E9PP52;E9PMB0 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 1 0 VQRPHS(0.98)S(0.02)PPRFVTVEELLETAR 155.37 2.63E-10 399830000 46989 103680 74925 34722 117540 121700 161950 285620 61959 65965 TRUE FALSE FALSE 57441.54094 115804.4741 102642.8754 36618.77494 105837.3049 128072.0238 127348.0595 215571.2472 74393.60298 49521.1395 1.159939806 2.33848565 2.07270827 0.739457438 2.137214652 2.586209145 2.571589846 4.353115646 1.502259515 1 15.59575689 -5.998472822 24.9930541 2.593758511 1.638727425 0.134191209 0.924296882 85.30398367 1395996.994 0.281198009 0.316535846 1.00E-06 5.998472822 -0.955031086 VQRPHSS(ph)PPR ddPTM_HeLa_A485_30min_R1 5 VQRPHSSPPR 10 1 E9PJ55;Q9NUJ3;R4GNF5;E9PP52;E9PMB0 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 1 0 VQRPHS(0.2)S(0.8)PPR;VQRPHS(0.088)S(0.912)PPR;VQRPHS(0.034)S(0.966)PPR;VQRPHS(0.169)S(0.831)PPR;VQRPHS(0.03)S(0.97)PPR ;;;; 96.745 0.001071 7693200000 722721 950284 888849 746078 1070041 897376 1067583 1147378 848633 1008778 TRUE FALSE FALSE 883487.7931 1061411.447 1217671.233 786834.352 963503.9609 944361.2198 839485.1707 865981.7465 1018945.859 757308.2098 1.166615893 1.401558089 1.607893877 1.038988277 1.272274549 1.246997203 1.108511911 1.143499747 1.345483709 1 19.53052104 -5.274424491 24.9995838 1.176606239 1.392976184 0.353575875 0.139996626 857.5419153 1650980.367 0.038984905 0.058211407 5.32E-06 5.274424491 0.216369946 VQRPHSS(ph)PPR ddPTM_HeLa_A486_30min_R1 7 VQRPHSSPPR 10 1 E9PJ55;Q9NUJ3;R4GNF5;E9PP52;E9PMB0 E9PJ55 TCP11L1 T-complex protein 11-like protein 1 1 0 VQRPHS(0.032)S(0.968)PPR;VQRPHS(0.263)S(0.737)PPR;VQRPHS(0.039)S(0.961)PPR;VQRPHS(0.239)S(0.761)PPR;VQRPHS(0.075)S(0.925)PPR;VQRPHS(0.187)S(0.813)PPR;VQRPHS(0.363)S(0.637)PPR ;;;;;; 121.69 9.16E-05 6637030000 1058690 1072348 981148 380888.7 1247686 917119 1091002 1135864 908974 1073583 TRUE FALSE FALSE 984481.2981 987371.2391 1361074.782 886728.1426 1091189.588 803974.1824 818021.7602 877252.5629 987764.5982 804750.8289 1.223336793 1.226927893 1.691299633 1.101866703 1.355934717 0.999034923 1.016490733 1.090092152 1.227416689 1 19.61818263 -6.256277458 24.92378481 1.069105396 1.323232867 0.397669304 0.15580631 447.1099104 2158824.031 0.052349297 0.050848389 5.54E-07 6.256277458 0.254127471 VQRPS(ph)LK ddPTM_HeLa_A485_30min_R1 4 VQRPSLK 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VQRPS(1)LK;VQRPS(1)LK;VQRPS(1)LK;VQRPS(1)LK ;;; 114.4 0.0012631 1266820000 1097080 891100 672778 1229550 1085430 995710 1704580 1813350 1356930 2490350 TRUE FALSE FALSE 1341121.661 995306.3935 921666.5788 1296717.203 977360.778 1047843.836 1340382.558 1368623.069 1629253.405 1869551.576 0.717349378 0.532377072 0.492988046 0.693597983 0.522778184 0.560478699 0.716954041 0.732059541 0.871467482 1 20.83426084 -7.655950925 0.985002259 0.997564002 0.581036758 0.78300913 0.072213818 0.222805978 0.431726046 0.066950586 0.023899752 2.21E-08 7.655950925 -0.416527244 VQRPS(ph)LK ddPTM_HeLa_A486_30min_R1 3 VQRPSLK 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VQRPS(1)LK;VQRPS(1)LK;VQRPS(1)LK ;; 95.775 0.0026738 1791620000 1693390 1549360 750630 799290 1238870 1927290 2531410 2905610 1382290 2468000 TRUE FALSE FALSE 1574692.106 1426583.071 1041294.039 1860787.514 1083479.373 1689520.555 1898024.443 2244066.032 1502108.01 1849996.736 0.851186424 0.771127345 0.562862636 1.005832863 0.585665559 0.913255965 1.025960969 1.213010806 0.811951708 1 20.81909129 -6.511934448 5.156335987 1.024887971 0.757633883 0.402283521 0.148252682 0.172640024 13.88989994 0.053198743 0.043692682 3.08E-07 6.511934448 -0.267254088 VQS(ph)LNVDAIIR ddPTM_HeLa_A485_30min_R1 1 VQSLNVDAIIR 11 0 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 1 0 VQS(1)LNVDAIIR 50.145 0.036179 65460000 40974 77014 96157 18530 88542 59515 42623 60500 70775 29608 TRUE FALSE FALSE 50088.52494 86020.11737 131729.4757 19542.24698 79726.44759 62631.11337 33516.24785 45662.28014 84978.89331 22227.27049 2.253471696 3.870026119 5.926480076 0.879201384 3.586875303 2.817759985 1.507888603 2.054335918 3.823181678 1 14.44004318 -5.271526622 24.98900132 2.332274599 4.00199607 0.298560641 1.243147549 886.6957269 2196598.788 0.346461435 0.520688417 5.35E-06 5.271526622 1.669721472 VQS(ph)LPSVPLSCAAYR ddPTM_HeLa_A485_30min_R1 1 VQSLPSVPLSCAAYR 15 0 Q96AD5-2;Q96AD5 Q96AD5-2 PNPLA2 Patatin-like phospholipase domain-containing protein 2 1 0 VQS(0.965)LPS(0.034)VPLSCAAYR 71.354 0.0091931 99279000 36530 36968 44394 50413 67848 45336 57003 55265 47262 75013 TRUE FALSE FALSE 44655.97247 41291.08602 60817.18799 53166.93454 61092.81489 47709.72286 44823.84338 41711.1721 56747.04989 56313.63961 0.792986793 0.733234192 1.079972604 0.944121795 1.0848671 0.847214337 0.795967792 0.740693949 1.007696364 1 15.78119678 -8.705122036 0.009220283 1.842006085 3.70E-05 0.04633443 0.126685491 19029.07728 64.15220766 6579.539576 6232.335099 1.97E-09 8.705122036 -1.841969061 VQS(ph)LPSVPLSCAAYR ddPTM_HeLa_A486_30min_R1 1 VQSLPSVPLSCAAYR 15 0 Q96AD5-2;Q96AD5 Q96AD5-2 PNPLA2 Patatin-like phospholipase domain-containing protein 2 1 0 VQS(0.874)LPS(0.126)VPLS(0.001)CAAYR 80.738 0.004204 120440000 51870 68355 37899 25264 75335 71500 77973 69126 72284 64228 TRUE FALSE FALSE 48234.18086 62938.30086 52574.50777 58815.86877 65885.78183 62679.05696 58463.33069 53387.51881 78549.63532 48144.89075 1.001854612 1.307268536 1.092005963 1.221643 1.368489591 1.301883876 1.21432056 1.108892719 1.631525882 1 15.55509508 -5.518746741 24.38597636 1.276843989 1.152025387 0.110237513 0.171417207 297.4067507 1755221.527 0.047588942 0.063016508 3.03E-06 5.518746741 -0.124818602 VQS(ph)PKPITGGLGAFTK ddPTM_HeLa_A485_30min_R1 2 VQSPKPITGGLGAFTK 16 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 VQS(0.999)PKPIT(0.001)GGLGAFTK;VQS(1)PKPITGGLGAFTK ; 112.58 8.00E-05 711860000 753570 550440 358770 1100290 847370 827650 1288340 1353900 565150 1468520 TRUE FALSE FALSE 921199.0467 614809.1698 491493.9527 1160396.057 763002.8675 870984.4742 1013075.634 1021853.902 678570.4211 1102444.99 0.835596383 0.557677866 0.445821748 1.052565948 0.692100626 0.790048013 0.918935315 0.92689786 0.615514087 1 20.07227524 -5.254911572 24.99906601 0.846506974 0.607496597 0.341384042 0.154520499 604.4491303 2314808.382 0.041290937 0.069417587 5.56E-06 5.254911572 -0.239010376 VQS(ph)PKPITGGLGAFTK ddPTM_HeLa_A486_30min_R1 2 VQSPKPITGGLGAFTK 16 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 VQS(1)PKPITGGLGAFTK;VQS(1)PKPITGGLGAFTK ; 124.08 1.19E-05 895390000 1424750 1203890 448710 623470 1162710 1549520 1741300 1742670 945820 2314760 TRUE FALSE FALSE 1324882.382 1108489.372 622462.5289 1451469.668 1016872.07 1358355.977 1305608.322 1345902.083 1027804.439 1735129.029 0.763564185 0.638851263 0.358741349 0.836519731 0.586049828 0.782855888 0.752456042 0.775678385 0.592350437 1 20.72661152 -6.059874408 1.239922699 0.768405665 0.614828304 0.168852225 0.150366269 0.878667055 2.805645491 0.067127255 0.072436558 8.71E-07 6.059874408 -0.153577361 VQS(ph)PPHLK ddPTM_HeLa_A485_30min_R1 1 VQSPPHLK 8 0 Q9P202;A0A669KBJ1;Q9P202-3;Q9P202-4 Q9P202 DFNB31 Whirlin 1 0 VQS(1)PPHLK 59.542 0.025702 102360000 138050 140680 117350 180110 183970 163030 191900 211950 146900 235780 TRUE FALSE FALSE 168758.7462 157131.3022 160762.6483 189948.9532 165653.3008 171565.9987 150898.9973 159968.9302 176381.4826 177004.3852 0.953415623 0.887725477 0.908241048 1.073131341 0.935871169 0.969275414 0.852515587 0.903756876 0.996480863 1 17.43342558 -5.389198901 0.004510391 1.878526228 2.90E-05 0.041687896 0.060050913 112848.79 121.3813413 24743.03817 25813.18611 4.08E-06 5.389198901 -1.878497182 VQS(ph)PSQTR ddPTM_HeLa_A485_30min_R1 3 VQSPSQTR 8 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;J3KSK9 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 VQS(0.954)PS(0.046)QTR;VQS(0.97)PS(0.03)QTR;VQS(0.953)PS(0.047)QTR ;; 173.07 1.86E-05 980380000 1021390 1223170 1049850 1030390 1232470 985740 1192250 1127740 1043870 1351420 TRUE FALSE FALSE 1248594.682 1366209.091 1438233.203 1086677.597 1109760.959 1037351.822 937516.0477 851159.9968 1253365.134 1014535.865 1.230705315 1.346634593 1.417626771 1.071108114 1.093860747 1.022489059 0.924083692 0.838964916 1.235407419 1 19.95238844 -5.386930934 4.234271696 1.011752635 1.332043362 0.633408796 0.106574175 0.145476949 4.308193281 0.031282064 0.047490903 4.10E-06 5.386930934 0.320290727 VQS(ph)PSQTR ddPTM_HeLa_A486_30min_R1 3 VQSPSQTR 8 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;J3KSK9 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 VQS(0.964)PS(0.036)QTR;VQS(0.984)PS(0.016)QTR;VQS(0.969)PS(0.031)QTR ;; 138.65 0.00023926 1449680000 1920560 1796300 1522890 537716 1731750 1656660 1725400 1643480 1852700 1764480 TRUE FALSE FALSE 1785938.662 1653954.646 2112593.792 1251830.023 1514537.767 1452278.133 1293686.671 1269295.481 2013293.528 1322642.723 1.350280488 1.250492379 1.597252044 0.946461203 1.145084565 1.098012417 0.978107427 0.959666173 1.522174879 1 20.33499198 -5.269889892 24.99547372 1.088724608 1.384456716 0.386103202 0.176788402 632.5965861 1871134.012 0.048408524 0.073100985 5.37E-06 5.269889892 0.295732108 VQS(ph)SPNLLAAGR ddPTM_HeLa_A485_30min_R1 2 VQSSPNLLAAGR 12 0 O94875-11;O94875-9;C9JWC3;C9JZ60;C9J372;C9JN77;C9J4Z9;C9JG84;C9IZT7;C9JDX2;C9JI79;C9JBB0;C9J9D3;C9JEA9;O94875-12 O94875-11;O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 VQS(0.919)S(0.081)PNLLAAGR;VQS(0.5)S(0.5)PNLLAAGR ; 222.55 4.77E-23 1339220000 729900 759480 762400 830570 992510 774270 960330 912270 678280 1009830 TRUE FALSE FALSE 892263.7369 848294.5794 1044443.486 875941.936 893692.2195 814809.58 755147.6503 688534.3521 814404.5744 758097.9655 1.176976825 1.118977517 1.377715722 1.155446889 1.178861124 1.074807765 0.996108267 0.908239282 1.074273526 1 19.53202477 -6.386019844 1.815979613 0.985313202 1.211580491 0.639264438 0.073850966 0.22256497 1.453863329 0.032415924 0.027089263 4.11E-07 6.386019844 0.226267289 VQS(ph)WSPPVR ddPTM_HeLa_A485_30min_R1 1 VQSWSPPVR 9 0 Q7Z6J0;Q7Z6J0-3 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 VQS(0.822)WS(0.178)PPVR 61.353 0.029 58961000 82815 86660 97639 88092 125830 94709 113610 127720 80714 116190 TRUE FALSE FALSE 101236.911 96794.13316 133759.7292 92904.2429 113301.9234 99667.81679 89336.29539 96396.46974 96912.55945 87225.97132 1.160628073 1.109693956 1.533485121 1.065098405 1.29894711 1.142639231 1.024193758 1.105134953 1.111051651 1 16.41247014 -6.505243591 5.280928995 1.069822366 1.233524805 0.302879914 0.123797375 0.241569783 20.49376634 0.045228312 0.037502807 3.12E-07 6.505243591 0.163702439 VQSGMGLILQGYES(ph)GS(ph)EEEGEIHEK ddPTM_HeLa_A485_30min_R1 2 VQSGMGLILQGYESGSEEEGEIHEK 25 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 VQSGMGLILQGY(0.135)ES(0.982)GS(0.883)EEEGEIHEK;VQSGMGLILQGY(0.068)ES(0.953)GS(0.978)EEEGEIHEK ; 84.58 0.0044742 203746000 263680 241460 224310 330710 351920 287820 418770 432700 282170 451150 TRUE FALSE FALSE 322334.7063 269696.6466 307291.6033 348775.8499 316881.6091 302889.8101 329296.3685 326579.6466 338798.9308 338686.6078 0.951719669 0.796301479 0.907303673 1.029789315 0.935618952 0.894307018 0.972274548 0.964253203 1.000331643 1 18.36959142 -4.628606166 0.25860098 1.003874274 0.797790341 0.268389117 0.054517769 10.85669608 0.72004608 0.082621243 0.708073605 2.35E-05 4.628606166 -0.206083932 VQSGMGLILQGYES(ph)GS(ph)EEEGEIHEK ddPTM_HeLa_A486_30min_R1 3 VQSGMGLILQGYESGSEEEGEIHEK 25 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 VQSGMGLILQGY(0.072)ES(0.946)GS(0.982)EEEGEIHEK;VQSGMGLILQGY(0.012)ES(0.992)GS(0.996)EEEGEIHEK;VQS(0.001)GMGLILQGY(0.067)ES(0.966)GS(0.966)EEEGEIHEK ;; 90.485 0.0031216 408927000 472467 459919 342399 314350 489052 531419 655890 604620 409638 632760 TRUE FALSE FALSE 439349.5031 423473.3434 474985.0626 731822.6864 427710.5379 465857.9269 491779.3847 466961.2248 445145.7517 474312.7774 0.926286459 0.892814538 1.001417388 1.5429116 0.901747872 0.982174525 1.036825083 0.984500623 0.938506768 1 18.85547921 VQSLEGEKLS(ph)PK ddPTM_HeLa_A485_30min_R1 6 VQSLEGEKLSPK 12 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK ;;;;; 141 6.48E-07 44004500000 27876900 17657800 9116660 53045700 23466280 21545980 42849100 36133800 15672360 68339400 TRUE FALSE FALSE 34078020.23 19722726.11 12489291.91 55943452.27 21129894.77 22674094.2 33694039.74 27271928.89 18817658.9 51303645.27 0.664241694 0.384431282 0.243438684 1.090438155 0.411859521 0.441958736 0.656757226 0.531578775 0.3667899 1 25.612558 -9.972666111 4.117492468 1.000026519 0.533380715 0.282503405 0.22356046 294820256.7 594331958.8 115413.0933 0.055786467 1.06E-10 9.972666111 -0.466645804 VQSLEGEKLS(ph)PK ddPTM_HeLa_A486_30min_R1 5 VQSLEGEKLSPK 12 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK;VQSLEGEKLS(1)PK ;;;; 191.89 3.38E-12 30535910000 11330540 9144050 3006120 9054410 6120560 11793460 17853950 14816520 6721670 25834300 TRUE FALSE FALSE 10536327.66 8419442.176 4170170.171 21079124.06 5352862.293 10338502.81 13386702.87 11443121.84 7304309.768 19365223.13 0.544085012 0.434771245 0.215343254 1.088504064 0.276416247 0.533869543 0.691275426 0.590910921 0.377186967 1 24.20696479 -11.22097875 2.365689659 2.559747376 0.532005256 0.271438354 0.23188379 8637272.422 1854581.466 72001916.11 0.055652761 6.01E-12 11.22097875 -2.02774212 VQSLEGEKLS(ph)PKS(ph)DISPLTPR ddPTM_HeLa_A486_30min_R1 1 VQSLEGEKLSPKSDISPLTPR 21 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VQSLEGEKLS(1)PKS(0.996)DIS(0.004)PLTPR 134.66 4.56E-07 295090000 98270 88229 63942 133220 106600 127140 203580 189490 85863 244690 TRUE FALSE FALSE 91381.78047 81237.41272 88702.05483 310142.8926 93229.23399 111454.7595 152642.1308 146347.2635 93305.67397 183418.0313 0.498215905 0.442908541 0.483605969 1.690907324 0.508288271 0.607654322 0.832208969 0.797889185 0.508705024 1 17.48477595 -5.05496371 24.99971588 0.836827357 0.468725686 0.222206651 0.320511168 454.1098498 206546.7614 0.08744562 0.151461283 8.81E-06 5.05496371 -0.368101671 VQSPS(ph)QTR ddPTM_HeLa_A485_30min_R1 1 VQSPSQTR 8 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;J3KSK9 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 VQS(0.466)PS(0.534)QTR 161.51 4.02E-05 448950000 501880 681740 596460 594260 631940 584150 628080 644270 624840 807560 TRUE FALSE FALSE 613521.4745 761463.5627 817115.3748 626722.9191 569021.8347 614735.1907 493885.5771 486261.7723 750239.6566 606250.154 1.011993928 1.256022052 1.347818832 1.033769501 0.938592479 1.013995933 0.814656415 0.80208107 1.237508398 1 19.20955368 -5.466018023 5.733604439 0.954924801 1.209770629 0.371320192 0.137533739 0.213423723 15.08301574 0.039428193 0.058031302 3.42E-06 5.466018023 0.254845828 VQSWKEEEK(ac)K ddPTM_HeLa_A486_30min_R1 1 VQSWKEEEKK 10 2 Q8IY33;Q8IY33-3;Q8IY33-5 Q8IY33 MICALL2 MICAL-like protein 2 0 1 VQSWKEEEK(1)K 78.939 0.026239 42708000 108060 60054 28461 2987.2 41198 42372 50602 66234 69723 61810 FALSE TRUE FALSE 100485.552 55295.10233 39481.86141 6954.352565 36030.56268 37144.57345 37940.84439 51153.96408 75766.64578 46332.37368 2.168797841 1.193444193 0.852144155 0.150097049 0.77765415 0.801698046 0.818884106 1.104065257 1.635285218 1 15.49973298 -7.527769701 24.09922375 1.334986987 0.928076602 0.06948911 0.497367453 232.358643 1144828.661 0.350167834 0.133522989 2.97E-08 7.527769701 -0.406910385 VQT(ph)LNEQDWER ddPTM_HeLa_A486_30min_R1 1 VQTLNEQDWER 11 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VQT(1)LNEQDWER 93.106 0.011433 82438000 62889 93352 72111 31792 92276 75215 82764 85760 65841 69812 TRUE FALSE FALSE 58480.80586 85954.44754 100034.3104 74013.38268 80701.88364 65935.73803 62055.57181 66234.32013 71548.15089 52330.6208 1.117525551 1.642526808 1.911582719 1.414341767 1.542154142 1.259983868 1.185836722 1.265689555 1.367232985 1 15.67536775 -6.280641669 3.740022854 1.225351007 1.550689269 0.361600288 0.204757875 0.269750526 8.377079885 0.075201435 0.069048893 5.24E-07 6.280641669 0.325338261 VQT(ph)PEVDVK ddPTM_HeLa_A485_30min_R1 3 VQTPEVDVK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VQT(1)PEVDVK;VQT(1)PEVDVK;VQT(1)PEVDVK ;; 108.5 0.0049058 733660000 2471190 1887210 1376710 3352290 2956360 2232990 3390240 3215400 1785630 4504680 TRUE FALSE FALSE 3020897.69 2107902.793 1886012.319 3535417.114 2662014.418 2349905.904 2665887.528 2426818.108 2143989.562 3381746.178 0.893295218 0.623317861 0.557703689 1.045441298 0.787171561 0.694879444 0.78831686 0.717622784 0.633988907 1 21.68933695 -11.3785207 2.362101523 2.973102518 0.748225482 0.238159176 0.134625175 6958409.54 1163935.504 73263680.73 0.034354902 4.18E-12 11.3785207 -2.224877036 VQT(ph)PEVDVK ddPTM_HeLa_A486_30min_R1 4 VQTPEVDVK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VQT(1)PEVDVK;VQT(1)PEVDVK;VQT(1)PEVDVK;VQT(1)PEVDVK ;;; 110.31 0.0044861 977880000 3690320 3567000 1846850 2082190 3490480 4299400 5434100 4776810 2593300 5591100 TRUE FALSE FALSE 3431647.625 3284337.929 2561999.78 4847443.548 3052671.451 3768983.741 4074430.704 3689234.64 2818089.332 4191052.168 0.818803367 0.783654748 0.611302288 1.156617325 0.728378299 0.899292967 0.972173703 0.880264547 0.672406169 1 21.99888105 -5.211611813 24.99999419 0.891980503 0.742493719 0.227539517 0.137123995 603.6199816 302853.3335 0.036074112 0.062482081 6.14E-06 5.211611813 -0.149486784 VQT(ph)PLLR ddPTM_HeLa_A485_30min_R1 4 VQTPLLR 7 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 VQT(1)PLLR;VQT(1)PLLR;VQT(1)PLLR;VQT(1)PLLR ;;; 112.75 0.01336 846440000 361242 338866 344117 548800 542115 366805 457265 452282 364375 724960 TRUE FALSE FALSE 441599.0366 378493.431 471420.1982 578779.5544 488140.1271 386010.3426 359566.5972 341359.1303 437501.7203 544240.8139 0.811403749 0.695452126 0.866197805 1.063462239 0.896919369 0.709263864 0.660675547 0.627220748 0.80387525 1 19.05388563 -6.263339625 24.69615324 0.730687653 0.868078781 0.12623344 0.128830772 247.2496001 3213309.169 0.04602553 0.042669945 5.45E-07 6.263339625 0.137391128 VQT(ph)PLLR ddPTM_HeLa_A486_30min_R1 4 VQTPLLR 7 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 VQT(1)PLLR;VQT(1)PLLR;VQT(1)PLLR;VQT(1)PLLR ;;; 132.22 0.0079737 1619360000 410541 536131 386411 192838 545592 548001 597210 565278 451590 556848 TRUE FALSE FALSE 381764.1959 493646.027 536039.6876 448936.6095 477158.7639 480394.2083 447781.7414 436576.5393 490734.1848 417409.6363 0.914603216 1.182641664 1.284205349 1.075530056 1.143142665 1.15089391 1.072763306 1.045918688 1.175665682 1 18.67110438 -6.769783298 23.89847069 1.077413452 1.133571378 0.059411519 0.096677768 330.2833046 945974.2202 0.040032885 0.027527732 1.70E-07 6.769783298 0.056157926 VQT(ph)TPPPAVQGQK ddPTM_HeLa_A485_30min_R1 1 VQTTPPPAVQGQK 13 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 VQT(0.5)T(0.5)PPPAVQGQK 86.756 0.0091407 539530000 615940 617030 553540 661220 824080 701370 994730 1004600 581040 1014000 TRUE FALSE FALSE 752953.728 689186.2911 758317.4807 697340.7743 742031.7017 738092.6487 782197.8093 758220.2748 697649.3984 761228.4613 0.989129764 0.905360645 0.996175944 0.916072913 0.974781868 0.969607268 1.027546721 0.996048248 0.916478342 1 19.53796998 -5.981663689 24.89568819 0.98316811 0.950788066 0.129401802 0.037214286 450.8194947 612086.1318 0.011206256 0.012704339 1.04E-06 5.981663689 -0.032380044 VQT(ph)TPPPAVQGQK ddPTM_HeLa_A486_30min_R1 2 VQTTPPPAVQGQK 13 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 VQT(0.582)T(0.418)PPPAVQGQK;VQT(0.5)T(0.5)PPPAVQGQK ; 106.58 0.0019396 588060000 1105240 1239500 769360 420210 1226370 1202530 1306950 1348050 902550 1308930 TRUE FALSE FALSE 1027768.383 1141277.506 1067276.796 978270.1162 1072547.239 1054174.075 979937.2865 1041128.443 980783.7607 981165.4083 1.047497573 1.163185632 1.087764394 0.99704913 1.09313601 1.074410152 0.998748303 1.061114093 0.999611026 1 19.90413685 -5.969762002 0.328682411 0.997512377 1.124270526 0.329832303 0.042728163 2.86300782 0.564497159 0.052478308 0.134083435 1.07E-06 5.969762002 0.126758149 VQT(ph)TPSKPGGDR ddPTM_HeLa_A485_30min_R1 4 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 VQT(0.487)T(0.487)PS(0.025)KPGGDR;VQT(0.5)T(0.5)PS(0.001)KPGGDR;VQT(0.499)T(0.499)PS(0.001)KPGGDR;VQT(0.487)T(0.487)PS(0.027)KPGGDR ;;; 143.31 4.93E-07 9207130000 2790760 2489800 2102670 3187560 3319050 2798180 3797730 3411990 2341950 4005790 TRUE FALSE FALSE 3411554.934 2780960.452 2880535.132 3361688.331 2988593.728 2944688.378 2986313.961 2575194.103 2811957.883 3007220.274 1.13445462 0.924761141 0.957873009 1.117872329 0.993806059 0.979206081 0.993047961 0.856337038 0.93506881 1 21.51999912 -7.075709896 6.971624264 0.921529051 1.01225732 0.234031433 0.069810002 0.368652948 28.99819653 0.032566653 0.018780068 8.40E-08 7.075709896 0.090728269 VQT(ph)TPSKPGGDR ddPTM_HeLa_A486_30min_R1 4 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 VQT(0.499)T(0.499)PS(0.002)KPGGDR;VQT(0.499)T(0.499)PS(0.002)KPGGDR;VQT(0.5)T(0.5)PSKPGGDR;VQT(0.477)T(0.477)PS(0.046)KPGGDR ;;; 137.84 2.15E-05 9515850000 2370750 2553210 1482590 1010440 2439390 2500770 3123330 2943490 1909760 2820330 TRUE FALSE FALSE 2204572.668 2350884.341 2056688.553 2352355.385 2133418.96 2192250.423 2341839.799 2273321.583 2075299.534 2114101.011 1.042794387 1.1120019 0.972843087 1.112697725 1.009137666 1.036965789 1.107723702 1.075313607 0.981646347 1 21.01161288 -7.765284459 24.99853692 0.99082314 1.058660117 0.277775237 0.043769642 130.1644528 846196.6073 0.035552913 0.010524496 1.72E-08 7.765284459 0.067836977 VQTT(ph)PPPAVQGQK ddPTM_HeLa_A486_30min_R1 1 VQTTPPPAVQGQK 13 0 Q2M2I8;Q2M2I8-2;E9PG46 Q2M2I8 AAK1 AP2-associated protein kinase 1 1 0 VQT(0.033)T(0.967)PPPAVQGQK 142.39 5.35E-07 272340000 646100 627320 398190 215200 681230 629940 761360 736820 490930 717430 TRUE FALSE FALSE 600811.7265 577608.8785 552379.8319 500996.4756 595783.7812 552224.4076 570859.6752 569062.1707 533484.2077 537780.8583 1.117205488 1.074059944 1.027146696 0.93159968 1.107856057 1.026857686 1.061509844 1.058167396 0.992010406 1 19.03665888 -4.535406777 3.047107588 1.028803816 1.113788516 0.302472354 0.044592898 0.341782455 6.073730476 0.011731233 0.051052789 2.91E-05 4.535406777 0.0849847 VQTT(ph)PSKPGGDR ddPTM_HeLa_A485_30min_R1 1 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 VQT(0.161)T(0.833)PS(0.007)KPGGDR 109.79 0.00051795 8763200000 963410 917210 709580 1181200 1209000 982990 1353900 1199900 880610 1474100 TRUE FALSE FALSE 1177717.231 1024469.731 972083.1701 1245725.965 1088627.715 1034457.836 1064628.205 905622.6436 1057340.35 1106633.999 1.064233732 0.925752988 0.878414337 1.125689222 0.983728781 0.934778651 0.962041837 0.818357871 0.955456231 1 20.07774672 -6.333235672 3.307703009 0.922088896 0.992585771 0.129175888 0.077402377 0.519532724 11.15738312 0.029375023 0.026044931 4.64E-07 6.333235672 0.070496875 VQTT(ph)PSKPGGDR ddPTM_HeLa_A486_30min_R1 3 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 VQT(0.184)T(0.793)PS(0.023)KPGGDR;VQT(0.331)T(0.666)PS(0.003)KPGGDR;VQT(0.018)T(0.979)PS(0.002)KPGGDR ;; 133.25 2.56E-05 9545070000 3175900 3384350 2046870 1623630 3360150 3519260 4259310 3928540 2681130 4098500 TRUE FALSE FALSE 2953285.81 3116161.78 2839472.881 3779892.694 2938688.655 3085089.482 3193585.588 3034097.201 2913532.507 3072208.923 0.961290682 1.014306598 0.924244722 1.230350145 0.956539327 1.004192605 1.039507946 0.987594684 0.948351033 1 21.5508449 -10.18300735 10.16234496 1.000031517 1.010466097 0 0.081479051 1.13E-10 0 0.076905097 0.018652226 6.56E-11 10.18300735 0.010434579 VQTT(ph)PSKPGGDRYIPHR ddPTM_HeLa_A485_30min_R1 2 VQTTPSKPGGDRYIPHR 17 2 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 VQT(0.203)T(0.795)PS(0.002)KPGGDRYIPHR;VQT(0.201)T(0.793)PS(0.006)KPGGDRYIPHR ; 113.36 0.0001235 1836430000 911930 1686330 699370 929540 1274840 2166030 2725000 5408800 873130 1436580 TRUE FALSE FALSE 1114785.682 1883531.624 958096.0662 980318.4165 1147912.453 2279439.981 2142781.489 4082283.319 1048359.182 1078467.044 1.033676169 1.746489737 0.888386967 0.908992465 1.064392704 2.113592616 1.986877114 3.78526478 0.972082724 1 20.04055066 -6.265654635 21.66796394 2.146599975 1.137204524 0.215612723 0.768586017 73.89473734 379841.3805 0.256318055 0.234823117 5.42E-07 6.265654635 -1.009395451 VQVAALQAS(ph)PPLDQDDR ddPTM_HeLa_A485_30min_R1 4 VQVAALQASPPLDQDDR 17 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR ;;; 195.46 1.35E-18 785880000 567199 490216 595139 797123 765458 461277 550827 484511 623144 1074854 TRUE FALSE FALSE 693370.4607 547542.4969 815305.6819 840667.8111 689246.3138 485428.7505 433138.3116 365683.9176 748203.285 806912.679 0.859288097 0.678564746 1.010401377 1.041832447 0.854177077 0.60158771 0.536784615 0.45318896 0.927241949 1 19.62205303 -6.170685771 5.443593486 0.659729807 0.895706086 0.187825539 0.182242331 0.314752655 14.74014327 0.061172069 0.061133051 6.75E-07 6.170685771 0.235976279 VQVAALQAS(ph)PPLDQDDR ddPTM_HeLa_A486_30min_R1 6 VQVAALQASPPLDQDDR 17 0 Q9UDY2-7;Q9UDY2;Q9UDY2-3;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;A0A3B3IRI3;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3IRV6;A0A3B3ISF1;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR ;;;;; 247.35 9.96E-43 1528054000 1061793 1577264 1259556 411784 1580040 1455004 1492227 1443773 1388061 1210738 TRUE FALSE FALSE 987366.7938 1452275.856 1747289.815 958653.9624 1381856.65 1275500.4 1118856.021 1115057.405 1508379.245 907561.3242 1.087933969 1.600195841 1.925258127 1.056296624 1.522604162 1.405415112 1.23281589 1.22863037 1.66201358 1 19.7916356 -5.281542338 24.9981703 1.321366394 1.544036092 0.139015665 0.26647594 1655.040778 2058051.122 0.073954835 0.109845166 5.23E-06 5.281542338 0.222669697 VQVEYK ddPTM_HeLa_A485_30min_R1 2 VQVEYK 6 0 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;P54652;E9PPY6;E9PN25 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ; ; 135.35 0.014246 142188000 315240 305650 246210 350300 341500 310180 399130 339110 280200 493300 FALSE FALSE TRUE 385364.0504 341393.1087 337293.3247 369436.002 307499.0609 326420.5452 313852.6149 255942.7408 336433.5699 370329.3885 1.040598079 0.921863399 0.910792757 0.997587589 0.830339342 0.881433003 0.847495837 0.691121873 0.908471162 1 18.49844952 -5.768370382 24.97438254 0.844831704 0.96037012 0.288456005 0.080667858 189.0614366 681241.3035 0.024315587 0.028170943 1.70E-06 5.768370382 0.115538416 VQVEYK ddPTM_HeLa_A486_30min_R1 1 VQVEYK 6 0 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;P54652;E9PPY6;E9PN25 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 119.89 0.020653 26121000 47699 50872 32598 16928 49312 54089 59126 54829 45289 62798 FALSE FALSE TRUE 44355.54642 46840.71745 45220.8186 39409.23949 43126.82914 47416.04912 44332.04943 42345.63361 49214.68698 47072.97205 0.942272061 0.995066073 0.960653569 0.837194632 0.916169667 1.007288196 0.941772901 0.899574252 1.045497763 1 15.52261132 -6.238434624 24.6190002 0.970234163 0.930387904 0.165518819 0.052777019 1597.156051 1709228.946 0.018409958 0.018396022 5.78E-07 6.238434624 -0.039846259 VQVEYKGETK ddPTM_HeLa_A485_30min_R1 2 VQVEYKGETK 10 1 P11142;E9PKE3;P11142-2;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;P54652;E9PPY6;E9PN25 P11142 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ; ; 130.56 0.0010052 134081000 128214 126069 83164 148323 221730 225958 326789 403378 153995 269212 FALSE FALSE TRUE 156734.762 140811.6729 113929.8243 156425.5099 199653.7827 237788.8115 256967.8605 304448.913 184900.384 202102.4029 0.775521516 0.696734284 0.563723255 0.773991341 0.98788426 1.176575875 1.271473554 1.50640917 0.914884639 1 17.62472695 -5.923176941 1.997015817 1.214317787 0.678404814 0.662782584 0.158120216 0.181489012 1.474755173 0.056080091 0.064928758 1.19E-06 5.923176941 -0.535912973 VQVSYK ddPTM_HeLa_A485_30min_R1 2 VQVSYK 6 0 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 135.35 0.014246 120916000 269630 264170 246910 289680 367910 256730 308140 279410 276670 411920 FALSE FALSE TRUE 329608.2633 295062.3835 338252.2838 305504.4849 331279.5886 270171.9858 242303.3717 210884.2594 332195.1312 309235.9248 1.065879598 0.954165929 1.093832432 0.987933356 1.071284291 0.873675935 0.783555054 0.681952653 1.074244952 1 18.23834841 -6.313769727 6.545591167 0.85554334 1.030756232 0.312601547 0.109002767 0.249738492 25.00495553 0.037420811 0.033134318 4.86E-07 6.313769727 0.175212891 VQVSYK ddPTM_HeLa_A486_30min_R1 1 VQVSYK 6 0 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 119.89 0.020653 27327000 59218 67502 52552 20512 75433 67261 68327 67993 66126 70785 FALSE FALSE TRUE 55067.124 62152.89568 72901.54179 47752.97262 65971.48976 58963.02168 51230.86191 52512.47818 71857.85492 53059.97527 1.037827924 1.171370612 1.373946019 0.899981057 1.243338117 1.11125234 0.965527437 0.989681543 1.354276073 1 15.69533638 -6.52398311 24.99087431 1.071065468 1.148963971 0.040572432 0.154074442 131.8682506 2983895.154 0.057639651 0.04500033 2.99E-07 6.52398311 0.077898502 VQVSYKGETK ddPTM_HeLa_A485_30min_R1 1 VQVSYKGETK 10 1 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 98.105 0.0069824 25496000 52509 61363 46355 54944 97376 94107 127200 166570 63303 92132 FALSE FALSE TRUE 64189.4459 68538.86906 63503.64349 57945.45159 87680.90353 99034.297 100022.6809 125718.4463 76007.33145 69165.18796 0.928060022 0.990944593 0.918144595 0.837783476 1.267702816 1.431851773 1.446141966 1.817654951 1.098924671 1 16.07775847 -5.905146736 4.037298227 1.41065886 0.924925903 0.486497277 0.211610624 0.170786565 5.217065699 0.065616784 0.075024501 1.24E-06 5.905146736 -0.485732957 VRAEMPNQLRK ddPTM_HeLa_A485_30min_R1 1 VRAEMPNQLRK 11 2 P48736 P48736 PIK3CG "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform" 0 0 78.334 0.01311 53475000 52842 33541 45153 38430 186610 14885 87878 41091 52730 272840 FALSE FALSE TRUE 64596.5206 37463.32818 61856.97367 40529.33359 168030.4532 15664.35558 69102.1474 31013.36782 63312.42733 204826.0092 0.315372646 0.182903179 0.301997651 0.197872007 0.820357013 0.076476399 0.337369984 0.151413231 0.309103456 1 17.6440394 -10.81300765 2.498660545 1.239236075 0.298440763 0.545222443 0.19200869 20261509.82 13157735.18 29243593.67 0.050146351 1.54E-11 10.81300765 -0.940795312 VRAEMPNQLRK ddPTM_HeLa_A486_30min_R1 2 VRAEMPNQLRK 11 2 P48736 P48736 PIK3CG "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform" 0 0 ; ; 87.308 0.0071467 152060000 245923 307800 160941 28153.8 356100 340170 514700 603180 315200 321630 FALSE FALSE TRUE 228685.0676 283408.807 223261.6653 65543.46921 311434.6175 298203.284 385916.6161 465849.0813 342521.7898 241091.7545 0.948539564 1.175522604 0.926044384 0.271861098 1.291768016 1.236887112 1.600704333 1.932248086 1.420711341 1 17.87922279 -6.237543918 2.189920439 1.541652445 0.869083965 0.413813589 0.324082465 0.291971544 2.750788162 0.128121737 0.119929208 5.79E-07 6.237543918 -0.67256848 VRANS(ph)KSEGS(ph)PVLPHEPAK ddPTM_HeLa_A485_30min_R1 1 VRANSKSEGSPVLPHEPAK 19 2 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 2 0 VRANS(0.816)KS(0.302)EGS(0.882)PVLPHEPAK 112.88 2.93E-05 149510000 147240 98609 78503 282920 200560 191560 362280 385560 138910 460030 TRUE FALSE FALSE 179993.03 110140.4648 107544.5265 298375.2032 180591.5422 201589.7854 284875.9184 291000.8055 166787.9628 345352.9872 0.521185676 0.318921419 0.311404651 0.863971688 0.52291872 0.583720984 0.824883319 0.842618469 0.48294924 1 18.39771218 -5.30696087 0.164004963 1.055858448 8.59E-17 0.437766155 0.17100215 13.21283618 0.583169693 0.804252841 3.223028848 4.93E-06 5.30696087 -1.055858448 VREEFK ddPTM_HeLa_A485_30min_R1 3 VREEFK 6 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 91.906 0.019414 1186060000 942760 1083600 848260 1042830 1264460 1189500 1573680 1738330 1020440 1594630 FALSE FALSE TRUE 1152473.71 1210317.594 1162066.673 1099797.162 1138565.923 1251780.381 1237450.412 1312001.842 1225232.948 1197118.088 0.962706788 1.011026068 0.970720169 0.918703989 0.951089065 1.045661571 1.033691183 1.095966935 1.023485452 1 20.19113404 -6.266745745 24.45147332 1.045379602 0.963510469 0.601125513 0.031155593 224.5501996 1034713.138 0.011256845 0.010220261 5.41E-07 6.266745745 -0.081869133 VREEFK ddPTM_HeLa_A486_30min_R1 3 VREEFK 6 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 81.784 0.026012 1065770000 1608610 1632750 1001890 659640 2169940 1711110 1949900 2007460 1371320 2090190 FALSE FALSE TRUE 1495854.746 1503364.944 1389848.64 1535675.256 1897765.891 1500010.645 1462014.396 1550405.181 1490187.122 1566792.819 0.954724025 0.959517382 0.887066 0.980139325 1.211242398 0.957376513 0.93312554 0.989540647 0.951106683 1 20.57938299 -5.515459123 24.9636337 1.009027245 0.935887065 0.159557646 0.075121611 668.0288641 2247614.31 0.023278506 0.031416477 3.05E-06 5.515459123 -0.073140181 VREES(ph)S(ph)FS(ph)DIPDVK ddPTM_HeLa_A485_30min_R1 1 VREESSFSDIPDVK 14 1 Q7L1W4 Q7L1W4 LRRC8D Volume-regulated anion channel subunit LRRC8D 3 0 VREES(1)S(1)FS(1)DIPDVK 50.292 0.011545 0 69130 30679 34303 215680 84865 37183 92015 67393 51806 253190 TRUE FALSE FALSE 84507.73 34266.64218 46993.10717 227462.0523 76415.54262 39129.84438 72355.24356 50864.76108 62202.98901 190074.3926 0.444603446 0.180280161 0.24723534 1.19670014 0.402029656 0.205865945 0.380668025 0.267604491 0.327256019 1 17.53620466 -10.13095048 4.609328842 1.000058179 0.406973924 0.292403738 0.277295799 171269267.5 125478946.7 91688.01794 0.070419526 7.40E-11 10.13095048 -0.593084255 VREYELR ddPTM_HeLa_A485_30min_R1 5 VREYELR 7 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 0 ;;;; ;;;; 164.53 0.00050248 751721000 772998 1204208.3 1036865.6 640986.4 1360032.7 709083.8 770139.7 763902 720043.4 640499 FALSE FALSE TRUE 944948.7383 1345029.985 1420445.333 676001.864 1224623.069 746210.3313 605593.0616 576553.8367 864549.5058 480834.3868 1.965227039 2.797283269 2.954125936 1.405893344 2.54687082 1.551907168 1.25946288 1.199069477 1.798019296 1 18.87518055 -6.140553485 0.967695179 1.280845883 2.504121399 0.522493137 0.458319617 0.434719066 0.874409843 0.252889814 0.261190282 7.24E-07 6.140553485 1.223275516 VREYELR ddPTM_HeLa_A486_30min_R1 4 VREYELR 7 1 Q5VVC8;P62913-2;P62913 Q5VVC8 RPL11 60S ribosomal protein L11 0 0 ;;; ;;; 150.05 0.00083164 882880000 1424530 984390 800750 322300 1052740 695030 835980 822470 642500 779740 FALSE FALSE TRUE 1324677.803 906383.3513 1110821.845 750330.6881 920695.5328 609284.2651 626808.9619 635211.5354 698192.4173 584488.0287 2.266389965 1.550730394 1.900504014 1.283740045 1.575217092 1.042423857 1.072406843 1.086782798 1.194536728 1 19.15681395 -1 0.286602338 0.97907452 10.61524334 0.800681658 0.178775362 21.42938932 0.303578008 0.184356119 104.2427384 0.1 1 9.636168819 up VRGEVAPDAK ddPTM_HeLa_A485_30min_R1 5 VRGEVAPDAK 10 1 P09382;F8WEI7 P09382 LGALS1 Galectin-1 0 0 ;;;; ;;;; 134.98 6.37E-05 964846000 1466230 1514630 1135500 1747290 1949160 1837560 2533790 2774290 1452137 2513320 FALSE FALSE TRUE 1792387.805 1691752.803 1555568.702 1842740.028 1755094.786 1933771.8 1992425.067 2093891.028 1743567.576 1886795.578 0.949963963 0.8966275 0.824450046 0.976650597 0.930198696 1.024897356 1.055983536 1.109760406 0.924089285 1 20.84750669 -6.020794252 1.605003651 1.033316263 0.89847874 0.464203866 0.057422187 0.311629664 1.629142707 0.022675853 0.024765352 9.53E-07 6.020794252 -0.134837524 VRGEVAPDAK ddPTM_HeLa_A486_30min_R1 2 VRGEVAPDAK 10 1 P09382;F8WEI7 P09382 LGALS1 Galectin-1 0 0 ; ; 118.77 0.0004223 568410000 824950 816860 544040 387750 1258050 862530 1055610 1041030 669910 1036270 FALSE FALSE TRUE 767125.265 752129.0386 754706.8579 902701.5958 1100253.638 756119.8182 791485.2129 804010.1945 727978.3382 776781.247 0.987569239 0.968263641 0.971582232 1.162105289 1.416426623 0.973401226 1.018929352 1.035053559 0.937172905 1 19.56714885 -10.02038139 5.894398525 0.999999903 1.057566886 0.011886025 0.135482459 1.86E-07 3.07E-08 0.141428157 0.034301309 9.54E-11 10.02038139 0.057566983 VRGGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_HeLa_A485_30min_R1 3 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 VRGGAPDPSPGATATPGAPAQPS(0.598)S(0.402)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.595)S(0.405)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.607)S(0.393)PDAR ;; 210.9 3.20E-29 3379310000 929910 1596430 1456590 996430 1893300 1601970 1889860 2230580 1499450 1448200 TRUE FALSE FALSE 1136765.271 1783118.601 1995443.255 1050862.448 1704796.404 1685846.672 1486075.972 1683526.758 1800375.861 1087190.392 1.045599078 1.640116225 1.835412886 0.966585481 1.568075304 1.5506453 1.366895792 1.548511438 1.655989488 1 20.05217318 -10.15105133 4.718297375 0.999953516 1.470874571 0.225789531 0.257607377 0.000122456 2.20E-05 0.242475096 0.058803059 7.06E-11 10.15105133 0.470921055 VRGGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_HeLa_A486_30min_R1 3 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.651)S(0.349)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.548)S(0.452)PDAR ;; 174.9 9.61E-15 2617600000 938130 917400 866120 305749 1186620 836430 1091610 1034130 819610 1110280 TRUE FALSE FALSE 872371.9315 844701.8829 1201504.859 711799.1237 1037783.055 733239.7708 818477.6321 798681.1739 890654.4547 832258.6613 1.048198081 1.014951147 1.443667594 0.8552619 1.246947738 0.881023899 0.983441411 0.959654986 1.070165438 1 19.66667245 -6.26949442 24.99177589 0.976622105 1.118942225 0.184207067 0.150315825 1088.749385 3377973.684 0.050551187 0.045345672 5.38E-07 6.26949442 0.14232012 VRGGAPDPSPGATATPGAPAQPS(ph)SPDARR ddPTM_HeLa_A485_30min_R1 2 VRGGAPDPSPGATATPGAPAQPSSPDARR 29 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR ; 170.19 1.47E-14 1556950000 424500 563060 346650 422830 702300 711460 1108970 1483310 438490 717080 TRUE FALSE FALSE 518928.5605 628904.969 474890.2603 445928.1322 632376.5461 748710.9455 872029.5 1119525.897 526490.9209 538325.1529 0.963968631 1.168262277 0.882162496 0.828362059 1.174711125 1.390815461 1.619893656 2.079646271 0.978016573 1 19.03811831 -6.177710678 2.604754667 1.504471314 0.972358024 0.303984361 0.308967228 0.304037399 4.03895012 0.111121795 0.108700104 6.64E-07 6.177710678 -0.532113289 VRGGAPDPSPGATATPGAPAQPSS(ph)PDAR ddPTM_HeLa_A485_30min_R1 1 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 VRGGAPDPSPGATATPGAPAQPS(0.221)S(0.779)PDAR 139.73 3.72E-07 1240800000 204420 327170 325170 164310 360530 292980 362700 439310 242370 290950 TRUE FALSE FALSE 249892.5238 365429.6855 445463.9145 173285.8392 324634.3673 308319.9798 285206.182 331568.5337 291011.4359 218421.5195 1.144083808 1.673047996 2.039468984 0.793355158 1.486274649 1.411582432 1.305760452 1.518021367 1.332338665 1 17.73675548 -12.55654111 0.207907707 1.33E-08 1.493011819 0.140347655 0.307954099 151.2764907 2.582126914 65.49516961 0.710452951 2.78E-13 12.55654111 1.493011805 VRGGAPDPSPGATATPGAPAQPSS(ph)PDAR ddPTM_HeLa_A486_30min_R1 1 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 VRGGAPDPSPGATATPGAPAQPS(0.287)S(0.713)PDAR 194.68 2.16E-21 1187700000 517200 550950 542790 184170 633210 497560 697330 604490 528390 621190 TRUE FALSE FALSE 480946.9508 507290.7155 752972.8244 428757.0674 553786.8974 436176.106 522850.6584 466860.8229 574191.2706 465639.9807 1.032872972 1.089448365 1.617070818 0.920790923 1.189302724 0.936723916 1.122864617 1.002621859 1.233122787 1 18.82885541 VRGPVSGS(ph)PDSMNASR ddPTM_HeLa_A485_30min_R1 2 VRGPVSGSPDSMNASR 16 1 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 VRGPVS(0.005)GS(0.995)PDSMNASR;VRGPVS(0.006)GS(0.991)PDS(0.003)MNASR ; 135.21 4.31E-06 896720000 293900 505270 404860 245308 494600 493010 555810 779800 394580 354790 TRUE FALSE FALSE 359277.0411 564356.9312 554634.5616 258708.5549 445355.8874 518823.2413 437056.6529 588552.8273 473768.5867 266347.3824 1.348903968 2.118875455 2.082372864 0.971320058 1.672086593 1.94791943 1.640927157 2.209718834 1.77876194 1 18.02294958 -10.24866626 6.194633048 0.999983076 1.763408214 0.283574487 0.358347229 8.49E-05 1.03E-05 0.351779913 0.085317274 5.64E-11 10.24866626 0.763425138 VRGPVSGS(ph)PDSMNASR ddPTM_HeLa_A486_30min_R1 2 VRGPVSGSPDSMNASR 16 1 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 VRGPVS(0.001)GS(0.998)PDSMNASR;VRGPVSGS(1)PDSMNASR ; 199.73 1.98E-25 749720000 382520 334980 335050 128239 495570 317190 395600 430800 276760 442430 TRUE FALSE FALSE 355707.3233 308434.9648 464790.333 298546.8728 433410.9896 278058.3228 296616.6958 332716.2443 300749.7796 331642.6483 1.072562064 0.930022017 1.40147938 0.900206516 1.306861442 0.838427519 0.894386465 1.003237207 0.906848927 1 18.33927002 -6.283062999 24.98347794 0.926645253 1.114727925 0.296691224 0.14883465 1052.956041 1216559.55 0.049807492 0.043967175 5.21E-07 6.283062999 0.188082672 VRHFS(ph)QSEETGNEVFGALNEEQPLPR ddPTM_HeLa_A485_30min_R1 2 VRHFSQSEETGNEVFGALNEEQPLPR 26 1 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 VRHFS(0.333)QS(0.333)EET(0.333)GNEVFGALNEEQPLPR;VRHFS(0.692)QS(0.158)EET(0.15)GNEVFGALNEEQPLPR ; 263.07 1.46E-62 983010000 130455 271365 202547 97767 271230 263795 257956 445140 165315 128278 TRUE FALSE FALSE 159474.2647 303098.7762 277477.564 103107.7637 244225.3889 277606.8983 202841.5933 335968.717 198492.2041 96300.65538 1.656003939 3.147421739 2.881367348 1.070686001 2.536071929 2.882710374 2.106336582 3.488747981 2.061171893 1 16.555258 VRHFS(ph)QSEETGNEVFGALNEEQPLPR ddPTM_HeLa_A486_30min_R1 1 VRHFSQSEETGNEVFGALNEEQPLPR 26 1 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 VRHFS(0.613)QS(0.376)EET(0.011)GNEVFGALNEEQPLPR 159.54 6.30E-20 0 43812 47214 39433 15586 66423 33625 45626 49619 33237 48388 TRUE FALSE FALSE 40741.00505 43472.59069 54702.51365 36284.99567 58091.60797 29476.68937 34209.89222 38321.83688 36118.00992 36271.32985 1.123228876 1.198538649 1.508147451 1.000376767 1.601584729 0.812671868 0.943166197 1.056532447 0.995772972 1 15.14654202 -6.282871026 24.99983261 0.964008072 1.277927393 0.468034557 0.172981569 744.5737847 868536.1726 0.058201181 0.051374886 5.21E-07 6.282871026 0.313919322 VRHFSQSEET(ph)GNEVFGALNEEQPLPR ddPTM_HeLa_A485_30min_R1 1 VRHFSQSEETGNEVFGALNEEQPLPR 26 1 A0A1B0GUI1;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2;Q6GYQ0-3 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 VRHFS(0.214)QS(0.123)EET(0.663)GNEVFGALNEEQPLPR 283.42 5.19E-76 374920000 51712 106610 79912 38383 112140 111250 122860 196740 68809 51560 TRUE FALSE FALSE 63215.156 119077.1121 109474.7742 40479.7661 100974.9479 117074.878 96609.95733 148489.2065 82618.33515 38707.04089 1.633169432 3.076368262 2.82829097 1.045798521 2.608697165 3.024640357 2.495927229 3.836232455 2.134452369 1 15.2403084 -5.972466523 24.99294878 2.691070827 2.206877537 0.018354626 0.863116661 651.8150645 591668.8297 0.260907491 0.295835682 1.07E-06 5.972466523 -0.48419329 VRHGT(ph)PDPS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VRHGTPDPSPR 11 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 VRHGT(1)PDPS(1)PR 65.472 0.016549 893670000 95742 158490 128550 97632 153890 132590 151500 169000 127030 138710 TRUE FALSE FALSE 117039.4776 177024.0268 176105.9944 102965.3889 138568.1713 139532.2074 119130.7874 127552.485 152523.7558 104132.1498 1.12395142 1.699993971 1.691177939 0.988795383 1.330695386 1.339953201 1.144034649 1.224909745 1.464713406 1 16.66805603 -5.252453585 24.9939551 1.229954093 1.524536387 0.297476963 0.203673197 805.2779768 2239872.595 0.054218879 0.092167681 5.59E-06 5.252453585 0.294582294 VRHGT(ph)PDPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 VRHGTPDPSPR 11 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 VRHGT(1)PDPS(1)PR;VRHGT(1)PDPS(1)PR ; 72.417 0.010435 1162870000 295990 305370 282570 94275 345730 261090 281530 284049 244438 284297 TRUE FALSE FALSE 275242.6295 281171.3691 391988.6715 219476.9644 302365.3196 228879.3704 211088.2163 219377.2434 265626.0827 213107.1807 1.291569006 1.319389464 1.839396824 1.029890047 1.418841536 1.074010597 0.990526061 1.029422109 1.246443605 1 17.70121968 -5.966334583 1.335117256 1.063209671 1.432417808 0.36838325 0.20004288 0.459406899 1.700694732 0.08346375 0.097174865 1.08E-06 5.966334583 0.369208137 VRLS(ph)PEPWTPETGLVTDAFK ddPTM_HeLa_A485_30min_R1 1 VRLSPEPWTPETGLVTDAFK 20 1 O60488-2;O60488 O60488-2 ACSL4 Long-chain-fatty-acid--CoA ligase 4 1 0 VRLS(1)PEPWTPETGLVTDAFK 194.77 4.49E-20 76660000 64771 67775 49696 76581 74212 84712 101050 109550 59761 102420 TRUE FALSE FALSE 79179.08549 75700.69669 68080.61842 80764.42612 66823.19271 89147.38933 79459.842 82682.69073 71754.48454 76888.5789 1.029789946 0.984550603 0.885445139 1.050408621 0.86909127 1.159436039 1.033441418 1.07535725 0.933226827 1 16.23048169 -6.253163235 24.99571248 1.044573956 0.965458958 0.205519154 0.074872043 992.0738255 2996276.345 0.02397065 0.023576537 5.58E-07 6.253163235 -0.079114998 VRLS(ph)PEPWTPETGLVTDAFK ddPTM_HeLa_A486_30min_R1 2 VRLSPEPWTPETGLVTDAFK 20 1 O60488-2;O60488 O60488-2 ACSL4 Long-chain-fatty-acid--CoA ligase 4 1 0 VRLS(0.999)PEPWT(0.001)PETGLVTDAFK;VRLS(1)PEPWTPETGLVTDAFK ; 203.47 1.18E-26 178818000 129359 110112 69219 56328 128848 126158 149536 145881 110764 181574 TRUE FALSE FALSE 120291.6021 101386.3241 96022.45055 131134.4307 112686.6824 110593.9086 112120.5112 112667.0809 120365.1127 136106.6886 0.883803753 0.744903319 0.705493988 0.963467939 0.827929058 0.812553077 0.823769297 0.827785042 0.884343848 1 17.05437844 -14 0.188061058 1.753546649 0.794218392 0.387317361 0.066706792 145.1075689 1.415108429 40.72430236 0.191425407 1.00E-14 14 -0.959328257 VRPAS(ph)TGGLSLLPPPPGGK ddPTM_HeLa_A485_30min_R1 2 VRPASTGGLSLLPPPPGGK 19 1 D6RB24;Q9NVZ3-4;Q9NVZ3;Q9NVZ3-2 D6RB24 NECAP2 Adaptin ear-binding coat-associated protein 2 1 0 VRPAS(0.472)T(0.472)GGLS(0.056)LLPPPPGGK;VRPAS(0.441)T(0.441)GGLS(0.118)LLPPPPGGK ; 92.336 0.00025811 1739770000 918410 939030 782160 935950 1064860 1077470 1288430 1407490 880580 1274500 TRUE FALSE FALSE 1122707.136 1048841.39 1071513.532 987078.5785 958838.7994 1133884.663 1013146.405 1062300.871 1057304.329 956790.6054 1.173409448 1.096207868 1.119903902 1.031655801 1.002140692 1.185091761 1.058900871 1.110275189 1.105053 1 19.8678437 -8.099225754 0.00949466 4.52E-07 2.138348332 0.198727527 0.054983901 3764.647983 21.50710105 2455.875532 2384.879111 7.96E-09 8.099225754 2.13834788 VRPAS(ph)TGGLSLLPPPPGGK ddPTM_HeLa_A486_30min_R1 2 VRPASTGGLSLLPPPPGGK 19 1 D6RB24;Q9NVZ3-4;Q9NVZ3;Q9NVZ3-2 D6RB24 NECAP2 Adaptin ear-binding coat-associated protein 2 1 0 VRPAS(0.499)T(0.499)GGLS(0.002)LLPPPPGGK;VRPAS(0.459)T(0.459)GGLS(0.083)LLPPPPGGK ; 117.67 1.30E-05 1833600000 1713010 1910640 1289830 735260 1806000 1677900 2173270 2083250 1400110 1763450 TRUE FALSE FALSE 1592936.845 1759233.928 1789286.719 1711722.438 1579474.64 1470897.758 1629494.859 1608939.452 1521472.662 1321870.642 1.205062579 1.330866934 1.353601981 1.294924317 1.194878371 1.112739561 1.232718852 1.21716861 1.150999662 1 20.33414957 -9.30628308 0.15347393 0.797648942 1.378750755 0.649343736 0.059304621 12.20521998 0.547510523 1.590452136 0.473252331 4.94E-10 9.30628308 0.581101813 VRPGFCFHLCSR ddPTM_HeLa_A485_30min_R1 2 VRPGFCFHLCSR 12 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 164.13 2.68E-06 453530000 114077 151672 150154 108938 155453 117356 162216 178452 95196 167692 FALSE FALSE TRUE 139453.0351 169408.721 205702.213 114889.0071 139975.5535 123500.5787 127557.2264 134686.3672 114300.964 125889.4705 1.107741851 1.345694126 1.633990612 0.912618082 1.111892463 0.981023895 1.013247779 1.069877938 0.907946975 1 16.94179809 -5.280783175 24.99750187 1.006910968 1.360797421 0.614474978 0.131654419 521.8510054 674373.7678 0.037014598 0.054994688 5.24E-06 5.280783175 0.353886453 VRPGFCFHLCSR ddPTM_HeLa_A486_30min_R1 2 VRPGFCFHLCSR 12 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 180.47 1.84E-09 263920000 200275 193100 164157 56786 194311 182415 215840 183833 157278 214362 FALSE FALSE TRUE 186236.7567 177798.0527 227722.9867 132200.6778 169938.7025 159910.492 161834.5491 141978.2389 170910.9837 160684.3599 1.159022302 1.106505031 1.417206919 0.822735193 1.0575933 0.995183925 1.007158065 0.883584681 1.063644176 1 17.29386999 -5.268524138 24.99899113 0.976384087 1.215470781 0.560679895 0.102002275 398.853032 1407376.044 0.027563203 0.041873313 5.39E-06 5.268524138 0.239086694 VRPSSDLNNSTGQS(ph)PHHK ddPTM_HeLa_A485_30min_R1 1 VRPSSDLNNSTGQSPHHK 18 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 VRPSSDLNNS(0.004)T(0.014)GQS(0.982)PHHK 92.034 0.00040502 131080000 28238 30181 23727 26129 36972 28121 34332 38466 25728 39964 TRUE FALSE FALSE 34519.44568 33710.40541 32504.60466 27556.36111 33290.93786 29593.37208 26996.68773 29032.15319 30891.37361 30001.71028 1.150582595 1.123616124 1.083425057 0.918493007 1.109634669 0.986389502 0.899838292 0.967683273 1.029653754 1 14.87275713 -5.047109881 4.524172297 0.987469356 1.131756171 0.557717123 0.055028949 0.15549987 6.971946373 0.015590239 0.02953254 8.97E-06 5.047109881 0.144286816 VRPSSDLNNSTGQS(ph)PHHK ddPTM_HeLa_A486_30min_R1 1 VRPSSDLNNSTGQSPHHK 18 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 VRPSSDLNNST(0.001)GQS(0.999)PHHK 150.36 1.92E-08 127930000 121900 86426 67953 19547 98353 94419 104150 108580 79674 90277 TRUE FALSE FALSE 113355.4395 79577.289 94266.22144 45506.40385 86016.64963 82770.54376 78090.56841 83858.70428 86580.20647 67671.0516 1.67509499 1.175942846 1.393006599 0.672464854 1.271099645 1.223130745 1.153973029 1.239210893 1.279427531 1 16.04625119 -3.831487522 1.577271647 1.150450846 2.645285953 0.405156407 0.188399203 3.783403763 3.573481607 0.051368372 12.17805705 0.000147405 3.831487522 1.494835107 VRQS(ph)PLATR ddPTM_HeLa_A485_30min_R1 4 VRQSPLATR 9 1 O75381;O75381-2;K7EK59 O75381 PEX14 Peroxisomal membrane protein PEX14 1 0 VRQS(1)PLATR;VRQS(1)PLATR;VRQS(1)PLATR;VRQS(1)PLATR ;;; 123.95 0.00015118 1848560000 157883 196228 204410 140674 214833 169235 208924 213416 190637 224829 TRUE FALSE FALSE 193003.5287 219175.1576 280029.7652 148358.6644 193443.4722 178095.8829 164285.6806 161075.3914 228896.0973 168783.268 1.143499181 1.298559746 1.659108563 0.878989169 1.14610574 1.055174989 0.973352884 0.954332697 1.35615396 1 17.36481237 -5.276599328 24.99898548 1.050887281 1.360206255 0.41811863 0.170249953 758.8347752 1251328.342 0.047420813 0.070637119 5.29E-06 5.276599328 0.309318974 VRQS(ph)PLATR ddPTM_HeLa_A486_30min_R1 4 VRQSPLATR 9 1 O75381;O75381-2;K7EK59 O75381 PEX14 Peroxisomal membrane protein PEX14 1 0 VRQS(1)PLATR;VRQS(1)PLATR;VRQS(1)PLATR;VRQS(1)PLATR ;;; 128.68 0.00012639 1555500000 200519 208731 200090 65579.8 249941 182650 205379 222175 209795 209686 TRUE FALSE FALSE 186463.6536 192190.3954 277570.2066 152673.0886 218591.0692 160116.5 153991.0019 171590.6025 227980.1995 157179.2608 1.186312066 1.222746528 1.765946762 0.971331 1.390711905 1.018687194 0.979715779 1.091687298 1.450447078 1 17.26205135 -5.324577979 24.99999905 1.132856034 1.37478973 0.238037463 0.214690885 327.9020647 129833.3813 0.06019937 0.08929011 4.74E-06 5.324577979 0.241933696 VRRHSS(ph)PS(ph)S(ph)PTSPK ddPTM_HeLa_A486_30min_R1 1 VRRHSSPSSPTSPK 14 2 O94921;C9JWL6;C9IYJ9;O94921-3;O94921-2 O94921 CDK14 Cyclin-dependent kinase 14 3 0 VRRHS(0.638)S(0.69)PS(0.69)S(0.982)PTSPK 63.827 0.020492 128860000 69943 47862 32383 36871 55878 73891 92195 86691 46409 100160 TRUE FALSE FALSE 65040.35689 44069.24081 44922.56485 85837.55136 48869.2602 64775.07969 69126.83586 66953.35175 50431.76949 75079.28407 0.866288986 0.58696938 0.598335019 1.143292087 0.650902054 0.862755692 0.920717835 0.891768649 0.671713511 1 16.19612727 VRRPS(ph)ESDKEDELDK ddPTM_HeLa_A485_30min_R1 1 VRRPSESDKEDELDK 15 3 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VRRPS(0.728)ES(0.272)DKEDELDK 107.45 0.0016176 211370000 282090 197320 110010 656390 230130 211000 384780 285740 203840 787980 TRUE FALSE FALSE 344839.9473 220394.8575 150707.2769 692246.9236 207217.4492 222047.6337 302568.6096 215661.817 244748.8183 591551.0877 0.582941955 0.372571131 0.254766292 1.170223397 0.350295103 0.375365101 0.511483481 0.364570062 0.413740797 1 19.17414324 -10.37306614 3.170177544 1.005268295 0.48785725 0.283543068 0.243949985 126858901.2 165352870.1 6139142.457 0.060789813 4.24E-11 10.37306614 -0.517411045 VRRPS(ph)ESDKEDELDK ddPTM_HeLa_A486_30min_R1 2 VRRPSESDKEDELDK 15 3 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VRRPS(0.851)ES(0.149)DKEDELDK;VRRPS(0.998)ES(0.002)DKEDELDK ; 135.04 6.25E-05 639770000 702170 606630 249005 496870 450180 854590 1103410 893600 462710 1709160 TRUE FALSE FALSE 652951.509 558558.4295 345426.4046 1156738.47 393714.2266 749159.3746 827325.1473 690146.7872 502818.0754 1281175.211 0.509650439 0.435973491 0.269616834 0.902872972 0.307307091 0.584743888 0.645754882 0.538682595 0.392466285 1 20.28903636 -11.22118872 2.340940025 2.604158397 0.513122268 0.420983047 0.172469319 7076426.98 1411574.577 60078008.99 0.043844088 6.01E-12 11.22118872 -2.091036129 VRS(ph)LETENAGLR ddPTM_HeLa_A486_30min_R1 1 VRSLETENAGLR 12 1 P02545;P02545-6;P02545-3;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 VRS(1)LETENAGLR 147.83 9.39E-07 0 34332 30008 24894 15764 38314 34155 39739 42218 24030 40502 TRUE FALSE FALSE 31925.50409 27630.05679 34533.62348 36699.38867 33508.30086 29941.30336 29795.88188 32605.88301 26112.93975 30360.03558 1.051563461 0.910079856 1.137469796 1.208805852 1.103697681 0.986207783 0.981417884 1.073973808 0.860108997 1 14.88988586 -6.270058413 23.08778512 0.9850323 1.082844747 0.259527616 0.085945373 370.9151472 993563.6779 0.032204242 0.028903862 5.37E-07 6.270058413 0.097812447 VRS(ph)PDEALPGGLSGCSSGSGHSPYALER ddPTM_HeLa_A486_30min_R1 1 VRSPDEALPGGLSGCSSGSGHSPYALER 28 1 Q5JSZ5-5 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 0 VRS(1)PDEALPGGLSGCSSGSGHSPYALER 142.56 3.23E-09 145250000 70391 79535 81684 12042 86742 61724 70073 60769 67340 40672 TRUE FALSE FALSE 65456.9544 73232.35694 113314.2324 28034.38457 75862.00952 54109.12044 52539.99424 46933.22528 73177.08542 30487.46647 2.147011936 2.40204797 3.716748077 0.919538021 2.488301532 1.77479885 1.72333094 1.539426876 2.400235044 1 14.89592865 -5.26737694 24.99995785 1.752614698 2.719947188 0.388395521 0.607521142 514.3556809 2165682.925 0.164118112 0.25086547 5.40E-06 5.26737694 0.96733249 VRS(ph)PSSCMVTVTVTATSEQPHIYIPAPASELDSSSTTK ddPTM_HeLa_A485_30min_R1 1 VRSPSSCMVTVTVTATSEQPHIYIPAPASELDSSSTTK 38 1 O15231-4;O15231-7;O15231;O15231-8;O15231-6;O15231-5;O15231-9;O15231-3;H0Y704;O15231-2 O15231-4;O15231-3 ZNF185 Zinc finger protein 185 1 0 VRS(0.277)PS(0.277)S(0.277)CMVT(0.084)VT(0.027)VT(0.018)AT(0.018)S(0.018)EQPHIY(0.002)IPAPASELDSSSTTK 46.416 0.019789 148950000 17263 23840 18131 15886 33772 30097 31474 28547 22119 28351 TRUE FALSE FALSE 21103.09479 26627.88062 24838.41139 16753.81195 30409.5411 31672.83238 24749.32278 21545.80349 26558.08041 21283.61746 0.991518234 1.251097501 1.167020195 0.78716938 1.428776906 1.488132008 1.162834411 1.012318678 1.247817974 1 14.37745576 -4.245458787 22.72258477 1.177554767 0.991517727 0.070432864 0.195313422 2561.722971 3642263.457 0.050644896 1.097579955 5.68E-05 4.245458787 -0.18603704 VRSS(ph)FGR ddPTM_HeLa_A485_30min_R1 2 VRSSFGR 7 1 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8;A0A087WVX8 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 VRS(0.042)S(0.958)FGR;VRS(0.016)S(0.984)FGR ; 76.17 0.0077379 854730000 112195 138117 124889 103190 140865 120240 141223 164918 122536 149843 TRUE FALSE FALSE 137152.3907 154268.5817 171090.6382 108827.0084 126839.986 126535.5805 111049.5524 124471.6019 147127.8512 112489.8978 1.219241847 1.37139943 1.52094225 0.96743806 1.127567795 1.124861725 0.98719578 1.106513602 1.30792057 1 16.77943592 -5.264649035 24.99977571 1.092109646 1.370615001 0.562373121 0.113867771 205.9842146 1604399.02 0.031911323 0.04966845 5.44E-06 5.264649035 0.278505356 VRSS(ph)FGR ddPTM_HeLa_A486_30min_R1 1 VRSSFGR 7 1 Q86W92-2;Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8;A0A087WVX8 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 VRS(0.032)S(0.968)FGR 72.607 0.0091933 353670000 44357 51960 27251 13317 44115 34722 48704 44659 27859 40260 TRUE FALSE FALSE 41247.80336 47842.50036 37803.31701 31002.649 38581.68534 30438.35267 36517.74406 34491.1206 30273.84055 30178.63395 1.366788286 1.585310337 1.252651696 1.027304584 1.27844373 1.008606046 1.210052918 1.14289867 1.003154768 1 14.88123988 -4.959123559 4.8346741 1.111724028 1.471899987 0.683557794 0.102531508 0.100970125 5.481769455 0.025566307 0.054283442 1.10E-05 4.959123559 0.360175959 VRVDS(ph)TAK ddPTM_HeLa_A485_30min_R1 4 VRVDSTAK 8 1 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 1 0 VRVDS(0.877)T(0.123)AK;VRVDS(0.917)T(0.083)AK;VRVDS(0.5)T(0.5)AK;VRVDS(0.5)T(0.5)AK ;;; 98.634 0.0012005 1979800000 1526330 1260760 878790 1674600 1363840 1232670 2153670 2205560 1086160 1957340 TRUE FALSE FALSE 1865856.843 1408194.915 1203890.991 1766079.158 1228051.301 1297210.695 1693520.811 1664642.952 1304142.349 1469411.16 1.269799014 0.958339608 0.819301652 1.201895838 0.835743823 0.882809884 1.152516638 1.132863964 0.887527184 1 20.48680671 -9.962816837 13.88836215 0.999999998 1.011937183 0.000402062 0.15496446 0 0 0.147893551 0.035869455 1.09E-10 9.962816837 0.011937185 VRVDS(ph)TAK ddPTM_HeLa_A486_30min_R1 4 VRVDSTAK 8 1 F8VQ14;F5GWF6;P78371;P78371-2 F8VQ14 CCT2 T-complex protein 1 subunit beta 1 0 VRVDS(0.939)T(0.061)AK;VRVDS(0.879)T(0.121)AK;VRVDS(0.978)T(0.022)AK;VRVDS(0.5)T(0.5)AK ;;; 100.92 0.0010097 2205800000 2284600 1780350 1229580 1070000 1694030 2269310 2816850 2347120 1578040 2875280 TRUE FALSE FALSE 2124461.338 1639268.582 1705706.305 2491014.075 1481548.961 1989345.605 2112044.336 1812732.013 1714825.778 2155291.173 0.985695745 0.760578711 0.791404116 1.155766843 0.687400839 0.923005499 0.979934573 0.841061308 0.795635318 1 21.03945136 -10.19191888 3.846348601 1.000085975 0.879429434 0.071979138 0.129188834 23719345.9 10475124.03 17911.41223 0.030153955 6.43E-11 10.19191888 -0.120656541 VRVELSNGEK ddPTM_HeLa_A485_30min_R1 2 VRVELSNGEK 10 1 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 ; ; 134.98 0.00072863 123620000 118493 111417 104451 163405 149951 125666 173828 149817 126136 214036 FALSE FALSE TRUE 144851.3591 124446.249 143091.7715 172331.4014 135021.3519 132245.6774 136688.2278 113074.1458 151450.3382 160680.7642 0.901485375 0.774493758 0.890534546 1.072507977 0.840308126 0.82303366 0.850681962 0.703719243 0.942554256 1 17.2938377 VRVELSNGEK ddPTM_HeLa_A486_30min_R1 2 VRVELSNGEK 10 1 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 ; ; 127.17 0.0012175 84421000 101276 126332 70260 42540 123662 136160 136949 137895 107902 162250 FALSE FALSE TRUE 94177.07539 116320.9922 97466.55363 99035.26985 108151.1589 119361.9636 102682.9117 106499.3187 117255.0322 121621.5439 0.774345337 0.956417658 0.801392175 0.814290517 0.88924343 0.981421216 0.844282258 0.875661624 0.964097548 1 16.89203928 -13.99999999 0.054647817 1.525938445 0.640129207 0.388561557 0.060374586 540.2481632 2.166707122 38.85382012 7.562149991 1.00E-14 13.99999999 -0.885809239 VRVELSNGEKR ddPTM_HeLa_A485_30min_R1 2 VRVELSNGEKR 11 2 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 ; ; 193.73 4.80E-14 143305000 106408 171341 114132 89134 175730 187205 236060 319630 121982 137721 FALSE FALSE TRUE 130078.0925 191377.8395 156354.1762 94003.16472 158233.7042 197006.7643 185623.8526 241240.2413 146462.6685 103389.6893 1.258134089 1.851034091 1.512280164 0.90921218 1.53045923 1.905477865 1.795380699 2.33331044 1.416608073 1 16.65773279 -6.011039797 24.32317048 1.773164474 1.399685512 0.102407028 0.391621457 689.5110743 1519152.568 0.123722056 0.131322538 9.75E-07 6.011039797 -0.373478961 VRVELSNGEKR ddPTM_HeLa_A486_30min_R1 2 VRVELSNGEKR 11 2 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 ; ; 174.42 1.81E-07 72968000 97303 78048 55358 30227 100714 67836 97044 98780 56495 113606 FALSE FALSE TRUE 90482.56217 71863.19223 76794.10014 70369.98359 88081.511 59467.08403 72762.56477 76289.95035 61392.03209 85158.31815 1.062521714 0.843877542 0.901780376 0.826343041 1.034326569 0.698312101 0.854438725 0.895860228 0.720916446 1 16.37785984 -6.254940713 24.99462767 0.828680091 0.921030474 0.177313028 0.105489642 986.3026703 3793435.661 0.0335879 0.032853365 5.56E-07 6.254940713 0.092350383 VRVELSTGMPR ddPTM_HeLa_A485_30min_R1 2 VRVELSTGMPR 11 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ; ; 165.7 3.81E-06 118767000 59239 86059 87793 58358 105615 81721 102394 117183 80036 78174 FALSE FALSE TRUE 72416.51118 96122.85144 120271.2841 61545.94977 95099.59976 85999.7852 80516.68542 88443.68551 96098.49107 58686.66049 1.233951814 1.637899493 2.049380269 1.048721281 1.620463645 1.465406014 1.371975927 1.507049213 1.637484401 1 15.84074499 -10.72379153 2.690084308 0.907529309 1.512290943 0.26437443 0.254145761 70357307.86 59190731.62 43821002.96 0.062648221 1.89E-11 10.72379153 0.604761634 VRVELSTGMPR ddPTM_HeLa_A486_30min_R1 2 VRVELSTGMPR 11 1 Q16629;Q16629-4;C9JAB2;A0A0B4J1Z1;Q16629-3;Q16629-2 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ; ; 148.13 0.00017609 79404000 70922 62614 54100 21975.9 79524 59310 70521 69352 53684 69595 FALSE FALSE TRUE 65950.73404 57652.2386 75048.96885 51161.0058 69549.35839 51992.93522 52875.8999 53562.06354 58337.37234 52167.95901 1.264200005 1.105127356 1.438602741 0.980697861 1.33318151 0.996644994 1.013570416 1.026723386 1.118260585 1 15.67087637 -6.278081579 24.97433768 1.031618236 1.216103135 0.393738048 0.119723612 864.3879659 1297151.501 0.03952327 0.034946657 5.27E-07 6.278081579 0.184484899 VRVESGYFS(ph)LEK ddPTM_HeLa_A485_30min_R1 1 VRVESGYFSLEK 12 1 A0A494BZV2;A0A1W2PPU9;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;Q6WCQ1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 MPRIP Myosin phosphatase Rho-interacting protein 1 0 VRVES(0.001)GY(0.002)FS(0.997)LEK 42.813 0.035333 50027000 44204 47853 48851 49046 63072 62259 63242 74606 39442 75355 TRUE FALSE FALSE 54037.0273 53448.99208 66923.01776 51725.25879 56792.33022 65518.78497 49729.83006 56308.76152 47357.64762 56570.38531 0.955217593 0.94482284 1.183004454 0.914352245 1.003923341 1.158181699 0.879078864 0.995375252 0.837145573 1 15.78775938 -6.811064096 24.99999887 0.927514537 1.023847316 0.21126093 0.093321875 185.9050333 93653.62949 0.038255266 0.025791746 1.55E-07 6.811064096 0.096332779 VRVFVVHIPR ddPTM_HeLa_A485_30min_R1 2 VRVFVVHIPR 10 1 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 ; ; 91.867 0.011177 45712000 41050 64557 48941 34661 46244 43453 58539 53694 26554 51116 FALSE FALSE TRUE 50181.43088 72106.37958 67046.3125 36554.44266 41639.78499 45728.13189 46031.66443 40525.46231 31883.14423 38373.72192 1.30770299 1.879056187 1.74719337 0.952590493 1.08511197 1.191652245 1.199562152 1.056073278 0.830858792 1 15.22783108 -5.259720638 24.99742457 1.061664427 1.668091412 0.724195953 0.169147174 78.59263907 1143045.588 0.046977693 0.076282642 5.50E-06 5.259720638 0.606426985 VRVFVVHIPR ddPTM_HeLa_A486_30min_R1 2 VRVFVVHIPR 10 1 Q8N726 Q8N726 CDKN2A Tumor suppressor ARF 0 0 ; ; 76.465 0.028092 24078000 36108 25597 22248.8 10696.6 24517 19303 26820 24299 16585.1 32562 FALSE FALSE TRUE 33577.01566 23568.6005 30864.1312 24902.22538 21441.84925 16921.59212 20109.35233 18766.64814 18022.70982 24408.26326 1.375641327 0.965599242 1.264495178 1.020237496 0.878466814 0.693273091 0.823874772 0.768864542 0.738385588 1 14.57508202 -5.661760287 2.276675995 0.791703394 1.17921003 0.660476038 0.123907673 0.171377616 1.812915888 0.037741338 0.051675186 2.18E-06 5.661760287 0.387506636 VRVS(ph)GQGLHEGHTFEPAEFIIDTR ddPTM_HeLa_A485_30min_R1 4 VRVSGQGLHEGHTFEPAEFIIDTR 24 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 VRVS(1)GQGLHEGHTFEPAEFIIDTR;VRVS(1)GQGLHEGHTFEPAEFIIDTR;VRVS(1)GQGLHEGHTFEPAEFIIDTR;VRVS(0.999)GQGLHEGHT(0.001)FEPAEFIIDTR ;;; 246.89 1.94E-49 1231030000 261759 396567 367064 292271 537526 356574 442529 590011 371153 372753 TRUE FALSE FALSE 319986.3865 442942.061 502856.2484 308237.0247 484008.0241 375243.6633 347979.064 445309.8771 445640.0027 279832.5371 1.143492425 1.582882625 1.79698992 1.101505307 1.729634549 1.340957943 1.243526102 1.591344172 1.592523898 1 18.09420419 -5.254731889 24.96445632 1.404330779 1.515297698 0.043803865 0.261425236 2215.469943 8245686.508 0.06976912 0.117121136 5.56E-06 5.254731889 0.110966919 VRVS(ph)GQGLHEGHTFEPAEFIIDTR ddPTM_HeLa_A486_30min_R1 4 VRVSGQGLHEGHTFEPAEFIIDTR 24 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 VRVS(1)GQGLHEGHTFEPAEFIIDTR;VRVS(1)GQGLHEGHTFEPAEFIIDTR;VRVS(1)GQGLHEGHTFEPAEFIIDTR;VRVS(1)GQGLHEGHTFEPAEFIIDTR ;;; 253.88 2.24E-61 1625480000 293184 385773 355901 145593.1 441167 317278 391503 442291 322301 312558 TRUE FALSE FALSE 272633.3156 355202.9425 493715.3986 338948.0947 385831.7211 278135.4662 293544.8085 341590.9944 350238.3102 234291.4424 1.163650336 1.516073054 2.107270302 1.446694302 1.646802449 1.187134551 1.252904526 1.457974696 1.494883068 1 17.83794473 -6.253167438 24.65116299 1.305598108 1.595083843 0.249672801 0.254687004 810.8122499 2416297.191 0.087160995 0.085714821 5.58E-07 6.253167438 0.289485735 VRVS(ph)PQDANPLMANGTLTR ddPTM_HeLa_A485_30min_R1 9 VRVSPQDANPLMANGTLTR 19 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-2;C9JZR2;O60716-6;O60716-4 O60716-5 CTNND1 Catenin delta-1 1 0 VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR ;;;;;;;; 204.7 5.95E-26 6279129000 2071150 2512969 2196384 2308446 2794220 2637827 2795975 3072930 2458204 3467362 TRUE FALSE FALSE 2531870.172 2806838.865 3008917.841 2434550.56 2516017.646 2775939.543 2198592.1 2319289.099 2951542.995 2603012.465 0.972669246 1.078304043 1.155936777 0.935281944 0.966579177 1.066433442 0.844633719 0.891001918 1.133895067 1 21.31175079 -5.281419627 24.6523358 0.970088501 1.069903441 0.184942218 0.08783726 1042.329696 1286060.89 0.025003053 0.037139242 5.23E-06 5.281419627 0.09981494 VRVS(ph)PQDANPLMANGTLTR ddPTM_HeLa_A486_30min_R1 7 VRVSPQDANPLMANGTLTR 19 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-2;C9JZR2;O60716-6;O60716-4 O60716-5 CTNND1 Catenin delta-1 1 0 VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR ;;;;;; 224.43 3.79E-35 5097550000 2958190 3190950 2876111 1065843 4047650 3287500 3492070 3530560 2939530 3666220 TRUE FALSE FALSE 2750836.157 2938087.501 3989818.204 2481336.369 3539955.994 2881921.675 2618317.151 2726728.56 3194330.827 2748174.649 1.000968464 1.069105088 1.45180664 0.902903449 1.288111727 1.048667586 0.952747727 0.992196242 1.16234637 1 21.39004226 -6.499486727 24.2138245 1.022534448 1.144964042 0.121842694 0.150190561 1069.823836 1107411.624 0.051838879 0.045392126 3.17E-07 6.499486727 0.122429594 VRYDS(ph)SNQVK ddPTM_HeLa_A485_30min_R1 4 VRYDSSNQVK 10 1 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 0 VRYDS(0.864)S(0.136)NQVK;VRYDS(0.899)S(0.101)NQVK;VRYDS(0.892)S(0.108)NQVK;VRYDS(0.987)S(0.013)NQVK ;;; 170.89 1.24E-07 3522070000 1719240 1689460 1324090 1852040 2094090 1756310 2599960 2710890 1639470 2651110 TRUE FALSE FALSE 2101679.007 1887027.651 1813925.991 1953212.256 1885595.047 1848267.676 2044457.306 2046039.977 1968496.591 1990237.067 1.055994304 0.948142149 0.911412023 0.981396783 0.947422334 0.928667095 1.027243106 1.028038323 0.989076439 1 20.92450886 -6.772724884 24.99914178 1.013426002 0.959430787 0.281204933 0.038089968 276.1316143 611668.2711 0.015973056 0.010876388 1.69E-07 6.772724884 -0.053995215 VRYDS(ph)SNQVK ddPTM_HeLa_A486_30min_R1 2 VRYDSSNQVK 10 1 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 0 VRYDS(0.702)S(0.298)NQVK;VRYDS(0.973)S(0.027)NQVK ; 187.1 4.62E-10 1944500000 963230 867450 550580 369630 876860 927200 1061090 1090680 686110 1197090 TRUE FALSE FALSE 895712.5511 798710.1028 763779.321 860517.3201 766876.0424 812811.4911 795594.0589 842355.9734 745582.5672 897330.8723 0.998196517 0.890095424 0.851167997 0.958974384 0.854619033 0.905810238 0.886622854 0.938735086 0.830889241 1 19.77528052 -10.27951001 4.450363534 1.000061593 0.900922274 0.264878609 0.049124154 2.82E-05 4.56E-06 0.044603519 0.010811226 5.25E-11 10.27951001 -0.099139319 VS(ph)DDGFIAIK ddPTM_HeLa_A486_30min_R1 1 VSDDGFIAIK 10 0 C9JIW4;E7EQL6;A0A087WWM6;O43272-2;O43272-1;O43272 C9JIW4 PRODH "Proline dehydrogenase 1, mitochondrial" 1 0 VS(1)DDGFIAIK 72.006 0.012732 81598000 68869 82917 54487 44603 83894 88415 104200 99130 65490 112860 TRUE FALSE FALSE 64041.63874 76346.35494 75585.82561 103838.0381 73371.23224 77507.25624 78128.05788 76560.26299 71166.72593 84599.1214 0.757001227 0.902448556 0.893458754 1.227412725 0.867281256 0.916170936 0.923509093 0.904977046 0.841222991 1 16.36835506 -4.272545316 2.154404731 0.947780939 0.710116112 0.238326957 0.102378369 0.994678566 5.321215869 0.027896071 0.452495024 5.34E-05 4.272545316 -0.237664827 VS(ph)DFGGR ddPTM_HeLa_A485_30min_R1 2 VSDFGGR 7 0 P27694;I3L4R8 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 VS(1)DFGGR;VS(1)DFGGR ; 155.42 0.00057973 1284160000 403240 389770 369890 548060 547210 379430 542840 496660 380650 673320 TRUE FALSE FALSE 492939.3468 435350.211 506727.7034 577999.13 492727.851 399296.3681 426857.7994 374853.3563 457042.9635 505473.7155 0.975202729 0.861271709 1.002480817 1.143480091 0.974784318 0.789944869 0.844470813 0.741588227 0.904187398 1 18.94727655 -6.187537174 6.469984469 0.839411632 0.994431086 0.350419553 0.090900603 0.25841331 18.60603586 0.030967871 0.030929417 6.49E-07 6.187537174 0.155019454 VS(ph)DFGGR ddPTM_HeLa_A486_30min_R1 4 VSDFGGR 7 0 P27694;I3L4R8 P27694 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 VS(1)DFGGR;VS(1)DFGGR;VS(1)DFGGR;VS(1)DFGGR ;;; 143.7 0.0013514 2178290000 1357251 1691140 1197359 555372 1727060 1467590 1572270 1691670 1361270 1584290 TRUE FALSE FALSE 1262114.714 1557127.907 1661008.471 1292934.083 1510436.031 1286533.667 1178871.416 1306513.67 1479265.98 1187573.472 1.062767688 1.311184482 1.398657439 1.088719236 1.271867439 1.083329745 0.992672406 1.10015397 1.245620599 1 20.17958534 -6.270748747 23.82612091 1.084884765 1.233230556 0.284626553 0.112541952 475.4304847 1216797.925 0.0398438 0.03566831 5.36E-07 6.270748747 0.148345791 VS(ph)DSPSHIATK ddPTM_HeLa_A485_30min_R1 1 VSDSPSHIATK 11 0 Q9P2D3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 0 VS(0.5)DS(0.5)PSHIATK 119.69 0.00014168 619430000 659300 736540 646560 709210 928070 698630 967450 1025000 704820 975330 TRUE FALSE FALSE 805959.0104 822671.946 885749.4496 747952.3465 835668.0921 735209.1865 760746.4042 773617.1429 846270.909 732198.1806 1.100738887 1.123564586 1.209712716 1.021516259 1.141314079 1.004112283 1.038989749 1.056567967 1.155794881 1 19.48187466 -5.273284786 24.99769891 1.062327906 1.142561319 0.326507035 0.055777649 896.0428889 1890941.999 0.015437683 0.023126321 5.33E-06 5.273284786 0.080233413 VS(ph)EGGPAEIAGLQIGDK ddPTM_HeLa_A485_30min_R1 2 VSEGGPAEIAGLQIGDK 17 0 O14907 O14907 TAX1BP3 Tax1-binding protein 3 1 0 VS(1)EGGPAEIAGLQIGDK;VS(1)EGGPAEIAGLQIGDK ; 237.31 2.96E-42 102046000 139459 110707 65747 186806 139624 97363 158748 113272 92211 234470 TRUE FALSE FALSE 170481.1734 123653.2206 90069.55126 197010.7388 125722.5443 102460.7761 124830.1929 85491.8644 110716.9019 176020.9441 0.968527775 0.70249152 0.511697922 1.119246007 0.714247642 0.582094231 0.709178067 0.485691432 0.628998455 1 17.42538757 -5.992999848 24.9828124 0.650505406 0.809598268 0.098464972 0.194743939 369.3102787 1318018.196 0.059424113 0.067234567 1.02E-06 5.992999848 0.159092862 VS(ph)EGGPAEIAGLQIGDK ddPTM_HeLa_A486_30min_R1 2 VSEGGPAEIAGLQIGDK 17 0 O14907 O14907 TAX1BP3 Tax1-binding protein 3 1 0 VS(1)EGGPAEIAGLQIGDK;VS(1)EGGPAEIAGLQIGDK ; 194.27 2.44E-18 169404000 98211 101040 54331 48064 87208 110428 124649 120052 83475 129060 TRUE FALSE FALSE 91326.91606 93033.22242 75369.41823 111895.421 76269.55946 96804.51611 93460.5018 92718.78032 90710.68021 96742.53596 0.944020282 0.961657884 0.779072178 1.156631051 0.788376681 1.000640671 0.966074549 0.958407586 0.937650428 1 16.56186274 -14 0.08615747 1.186243123 0.893300416 0.032946882 0.100164276 958.9046209 5.772703058 33.07939915 2.583138768 1.00E-14 14 -0.292942707 VS(ph)ETEYSALEQSTK ddPTM_HeLa_A485_30min_R1 2 VSETEYSALEQSTK 14 0 P25106 P25106 ACKR3 Atypical chemokine receptor 3 1 0 VS(0.984)ET(0.016)EYSALEQSTK;VS(1)ETEYSALEQSTK ; 381.72 4.90E-111 291750000 488600 308050 219181 733210 330600 344720 629120 402240 281980 1153000 TRUE FALSE FALSE 597287.3843 344073.7678 300265.1728 773263.4057 297684.3032 362769.0062 494703.3726 303590.0093 338570.7995 865578.3194 0.690044299 0.397507378 0.346895441 0.893348861 0.34391377 0.41910593 0.571529302 0.350736614 0.391149815 1 19.72330484 -10.4109688 3.422663069 1.004915539 0.486345045 0.443810933 0.1714642 470597365.5 654310671.7 22749837.06 0.042472084 3.88E-11 10.4109688 -0.518570494 VS(ph)ETEYSALEQSTK ddPTM_HeLa_A486_30min_R1 2 VSETEYSALEQSTK 14 0 P25106 P25106 ACKR3 Atypical chemokine receptor 3 1 0 VS(0.992)ET(0.008)EYSALEQSTK;VS(1)ETEYSALEQSTK ; 295.37 5.77E-58 373650000 360480 344560 209493 143547 273790 431110 430210 365950 342970 578560 TRUE FALSE FALSE 335212.2135 317255.8107 290614.3 334184.6705 239448.7052 377924.0314 322566.9077 282631.1736 372698.9157 433684.8102 0.772939715 0.731535445 0.670104862 0.770570383 0.552126105 0.871425566 0.74378189 0.651697193 0.85937738 1 18.72628739 -7.999268939 4.627738513 0.999606399 0.721742372 0.552167623 0.080363046 0.11309448 7.54800983 0.074560083 0.019485848 1.00E-08 7.999268939 -0.277864026 VS(ph)FELFADKVPK ddPTM_HeLa_A486_30min_R1 1 VSFELFADKVPK 12 1 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 1 0 VS(1)FELFADKVPK 88.73 0.00057042 0 28978 26481 16865 29405 32253 42734 41738 40500 31857 62889 TRUE FALSE FALSE 26946.79184 24382.54912 23395.57966 68456.32605 28207.52799 37461.91357 31294.71094 31279.03411 34618.39041 47141.18506 0.571618889 0.517223932 0.496287474 1.452155391 0.598362726 0.794674837 0.663850747 0.663518197 0.73435554 1 15.52470041 VS(ph)FSSTK ddPTM_HeLa_A486_30min_R1 1 VSFSSTK 7 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VS(1)FSSTK 79.489 0.013154 136210000 237040 183650 86866 88108 167290 265770 258360 323680 131440 244030 TRUE FALSE FALSE 220424.7201 169096.9052 120502.8416 205119.8767 146306.9283 232981.9996 193715.5953 249985.1299 142833.325 182923.2996 1.205011721 0.924414252 0.658761578 1.12134363 0.799826641 1.273659507 1.058999022 1.366611746 0.780837243 1 17.48087932 -6.257254373 24.96088471 1.11662083 0.935144057 0.119819022 0.204729086 673.4109993 4016469.187 0.066197283 0.064001186 5.53E-07 6.257254373 -0.181476773 VS(ph)GQGLHEGHTFEPAEFIIDTR ddPTM_HeLa_A485_30min_R1 1 VSGQGLHEGHTFEPAEFIIDTR 22 0 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 VS(0.5)GQGLHEGHT(0.5)FEPAEFIIDTR 90.35 0.0010765 28018000 11874 12259 12669 21649 20287 9410.3 15389 11895 16368 21747 TRUE FALSE FALSE 14515.33034 13692.58341 17355.7903 22831.63005 18267.15505 9903.008757 12101.01443 8977.732599 19652.90746 16325.87312 0.889099788 0.83870451 1.063084968 1.39849366 1.118908306 0.606583714 0.741216984 0.549908267 1.20378906 1 13.99487253 -6.243796363 24.61964245 0.7872262 1.068064287 0.216572012 0.22500964 973.5909342 1358581.092 0.077178502 0.077007533 5.70E-07 6.243796363 0.280838086 VS(ph)HS(ph)PPPK ddPTM_HeLa_A485_30min_R1 1 VSHSPPPK 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 VS(1)HS(1)PPPK 57.532 0.011365 0 274180 219160 212870 423560 314100 234170 355690 269860 223780 552020 TRUE FALSE FALSE 335170.3951 244788.8556 291619.4713 446698.0103 282827.1011 246430.7791 279693.9258 203676.4119 268690.5934 414411.5732 0.808786281 0.590690201 0.703695288 1.077909111 0.682478771 0.594652261 0.674918231 0.491483407 0.648366529 1 18.66070477 -4.999764679 24.8473295 0.720560065 0.686601887 0.001146585 0.175210517 80.93137895 8540839.498 0.048165802 0.098631029 1.00E-05 4.999764679 -0.033958178 VS(ph)HS(ph)PPPKQR ddPTM_HeLa_A485_30min_R1 1 VSHSPPPKQR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 VS(1)HS(1)PPPKQR 66.989 0.018119 186440000 267830 335450 234340 289380 458990 435760 631730 780950 284400 418960 TRUE FALSE FALSE 327407.8595 374677.9595 321032.1177 305188.0967 413291.344 458575.7198 496755.7247 589420.788 341476.4713 314520.9824 1.040973028 1.191265386 1.020701752 0.970326667 1.314034253 1.458013123 1.579404086 1.87402692 1.085703309 1 18.26279674 -5.955593897 3.767734264 1.461011953 1.064154361 0.301786339 0.23819469 0.241709932 7.244391979 0.075995759 0.084881471 1.11E-06 5.955593897 -0.396857592 VS(ph)HS(ph)PPPKQR ddPTM_HeLa_A486_30min_R1 1 VSHSPPPKQR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 VS(1)HS(1)PPPKQR 69.602 0.015695 172660000 295500 264340 202420 192380 407980 313270 486380 463280 232040 448340 TRUE FALSE FALSE 274786.976 243392.7357 280802.445 447870.3623 356807.3441 274621.9325 364682.5796 357801.2573 252153.414 336072.7458 0.817641357 0.724226343 0.835540663 1.332658979 1.061696756 0.817150263 1.085129884 1.064654191 0.750294147 1 18.35841402 -5.018976403 24.87137097 1.020445522 0.77317119 0.323880537 0.149806315 773.0759704 1013232.475 0.041149487 0.072845362 9.57E-06 5.018976403 -0.247274332 VS(ph)KPVSPSLDPLAMLYK ddPTM_HeLa_A485_30min_R1 2 VSKPVSPSLDPLAMLYK 17 1 Q6ZSZ6-2;Q6ZSZ6 Q6ZSZ6-2 TSHZ1 Teashirt homolog 1 1 0 VS(0.536)KPVS(0.42)PS(0.045)LDPLAMLYK;VS(0.434)KPVS(0.434)PS(0.132)LDPLAMLYK ; 65.784 0.0061269 62937000 56102 53763 36485 82230 75962 71820 96313 101664 53412 109692 TRUE FALSE FALSE 68581.69635 60050.11517 49982.31977 86722.01668 68398.95656 75580.38415 75734.94075 76730.7446 64131.29848 82347.80313 0.832829702 0.729225467 0.606966038 1.053118764 0.83061058 0.917819071 0.919695947 0.931788605 0.778785785 1 16.32944254 -5.256968057 24.99995221 0.912307102 0.723628914 0.506882269 0.088346549 315.4419326 1763685.753 0.023482682 0.038940857 5.53E-06 5.256968057 -0.188678188 VS(ph)KSPSPASTSTVPNMTDAPTAPK ddPTM_HeLa_A486_30min_R1 1 VSKSPSPASTSTVPNMTDAPTAPK 24 1 Q659A1 Q659A1 ICE2 Little elongation complex subunit 2 1 0 VS(0.329)KS(0.329)PS(0.068)PAS(0.068)T(0.068)S(0.068)T(0.068)VPNMTDAPTAPK 61.499 0.0098336 387940000 117830 119330 59103 45598 103270 153600 175070 156020 113860 195890 TRUE FALSE FALSE 109570.7255 109873.8562 81989.26443 106154.4484 90316.91365 134650.3937 131265.6343 120497.6519 123729.4765 146837.869 0.746202095 0.748266486 0.558365938 0.722936455 0.615079164 0.917000462 0.893949464 0.820617003 0.842626479 1 17.16386456 -6.266446243 24.95784655 0.883571675 0.677895514 0.698851855 0.070922712 250.3146748 1247746.39 0.024580673 0.022340022 5.41E-07 6.266446243 -0.205676161 VS(ph)LDVNHFAPDELTVK ddPTM_HeLa_A485_30min_R1 3 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 VS(1)LDVNHFAPDELTVK;VS(1)LDVNHFAPDELTVK;VS(1)LDVNHFAPDELTVK ;; 195.56 7.70E-19 244376000 336642 245105 186172 516359 363560 332096 483603 463519 248243 635364 TRUE FALSE FALSE 411526.8515 273767.8976 255044.7701 544566.3847 327362.6899 349484.033 380277.2684 349840.2385 298063.0931 476979.4478 0.862776905 0.573961622 0.534708091 1.141697797 0.686324519 0.732702498 0.797261329 0.733449292 0.624897141 1 18.86356758 -10.53640476 3.076533968 1.009592686 0.743042433 0.182797476 0.162962519 113010250.1 133036414 9073655.085 0.041194654 2.91E-11 10.53640476 -0.266550252 VS(ph)LDVNHFAPDELTVK ddPTM_HeLa_A486_30min_R1 3 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 VS(1)LDVNHFAPDELTVK;VS(1)LDVNHFAPDELTVK;VS(1)LDVNHFAPDELTVK ;; 213.13 4.39E-26 273290000 529762 586523 323955 336345 558770 751280 887860 791960 525584 801610 TRUE FALSE FALSE 492628.4195 540044.7814 449399.0518 783028.1579 488683.8563 658594.7121 665708.0372 611647.9964 571142.0443 600881.6384 0.819842691 0.898754009 0.747899458 1.303132111 0.813278065 1.096047324 1.107885471 1.017917602 0.950506735 1 19.19672131 -5.21301851 24.99999803 1.037560117 0.829824212 0.401045206 0.122529584 398.9026261 205955.273 0.031432155 0.054441985 6.12E-06 5.21301851 -0.207735905 VS(ph)LERLDLDLTADSQPPVFK ddPTM_HeLa_A485_30min_R1 3 VSLERLDLDLTADSQPPVFK 20 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 VS(1)LERLDLDLTADSQPPVFK;VS(1)LERLDLDLTADSQPPVFK;VS(1)LERLDLDLTADSQPPVFK ;; 240.18 1.78E-46 436175000 633770 596010 566040 985480 1282410 800980 1237320 1173360 772920 1429280 TRUE FALSE FALSE 774749.95 665708.1849 775441.7509 1039314.277 1154728.758 842918.0742 972956.474 885591.6202 928037.9544 1072986.8 0.722049843 0.620425326 0.722694586 0.968617952 1.076181699 0.785581029 0.906773945 0.825351831 0.864910877 1 20.0332009 -5.144014238 4.798020164 0.910956606 0.672051526 0.61665788 0.083345525 0.155525973 5.451953934 0.023860061 0.042721827 7.18E-06 5.144014238 -0.23890508 VS(ph)LERLDLDLTADSQPPVFK ddPTM_HeLa_A486_30min_R1 6 VSLERLDLDLTADSQPPVFK 20 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 0 VS(1)LERLDLDLTADSQPPVFK;VS(1)LERLDLDLTADSQPPVFK;VS(0.918)LERLDLDLT(0.08)ADS(0.003)QPPVFK;VS(0.523)LERLDLDLT(0.42)ADS(0.057)QPPVFK;VS(1)LERLDLDLTADSQPPVFK;VS(1)LERLDLDLTADSQPPVFK ;;;;; 198.39 1.68E-26 747499000 783800 890943 599126 611632 1174518 1111201 1506795 1562456 762403 1226257 TRUE FALSE FALSE 728859.6675 820341.4319 831123.6324 1423910.206 1027199 974112.3185 1129778.954 1206718.877 828488.7059 919194.2656 0.792933219 0.892457082 0.904187138 1.549085171 1.117499357 1.059745861 1.229097043 1.312800702 0.901320577 1 19.81001027 -5.03093636 24.66978547 1.180040858 0.85660171 0.401882359 0.170307576 505.3786512 403007.3806 0.045029503 0.078120364 9.31E-06 5.03093636 -0.323439147 VS(ph)LQALEAEAEAGAETEAMLQR ddPTM_HeLa_A486_30min_R1 2 VSLQALEAEAEAGAETEAMLQR 22 0 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VS(1)LQALEAEAEAGAETEAMLQR;VS(0.997)LQALEAEAEAGAET(0.003)EAMLQR ; 59.281 0.016343 23462000 11732.2 17257.5 25869 3528.7 24853 13562 15771.4 14566.7 19102.9 13513.3 TRUE FALSE FALSE 10909.83337 15889.95285 35886.1696 8214.991931 21735.70499 11888.85833 11825.22891 11250.1804 20758.75475 10129.48172 1.077037667 1.568683698 3.542744888 0.810998248 2.145786486 1.173688709 1.167407102 1.110637317 2.049340264 1 13.30627274 -6.272896169 23.62792975 1.298829001 1.853232218 0.113635822 0.736929623 824.760477 1700939.18 0.257697048 0.229483237 5.33E-07 6.272896169 0.554403217 VS(ph)LSEIGFGK ddPTM_HeLa_A485_30min_R1 4 VSLSEIGFGK 10 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 VS(1)LSEIGFGK;VS(1)LSEIGFGK;VS(1)LSEIGFGK;VS(1)LSEIGFGK ;;; 189.13 7.55E-10 115704000 236653 231100 170873 328716 284736 214972 310205 310334 222380 398362 TRUE FALSE FALSE 289295.6434 258125.1347 234086.0333 346672.9227 256386.6841 226227.6015 243927.1676 234224.0999 267009.6262 299057.6847 0.96735733 0.863128245 0.782745421 1.159217571 0.857315151 0.75646811 0.815652565 0.783207093 0.892836532 1 18.19006426 -5.980953534 24.99976314 0.830951912 0.93623448 0.133618168 0.10957278 437.786425 574621.1221 0.033734715 0.038246456 1.04E-06 5.980953534 0.105282568 VS(ph)LSEIGFGK ddPTM_HeLa_A486_30min_R1 3 VSLSEIGFGK 10 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 VS(1)LSEIGFGK;VS(1)LSEIGFGK;VS(1)LSEIGFGK ;; 159.99 6.21E-07 149173000 322059 320900 164083 143273 297415 337596 389404 359382 247977 405379 TRUE FALSE FALSE 299484.3272 295470.7153 227620.3319 333546.7846 260110.4374 295946.8379 291971.0005 277558.5639 269471.846 303869.4598 0.985569025 0.972360682 0.74907275 1.097664717 0.85599401 0.973927548 0.960843517 0.913413819 0.886801346 1 18.21309216 -5.271738525 24.99861893 0.948754726 0.909336795 0.068230244 0.08645216 2555.030005 6201696.426 0.02365199 0.0355513 5.35E-06 5.271738525 -0.039417931 VS(ph)PAAAQLADTLFSK ddPTM_HeLa_A485_30min_R1 2 VSPAAAQLADTLFSK 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 VS(1)PAAAQLADTLFSK;VS(1)PAAAQLADTLFSK ; 221.37 1.37E-33 100540000 116777 89735 79747 178625 109856 98407 113112 95023 97492 214111 TRUE FALSE FALSE 142753.6408 100228.7277 109248.7338 188382.8314 98918.35091 103559.4384 88944.69716 71718.46026 117057.7502 160737.0681 0.888118979 0.623557023 0.679673551 1.171993702 0.615404723 0.644278508 0.553355229 0.446184947 0.728256099 1 17.29434315 VS(ph)PAAAQLADTLFSK ddPTM_HeLa_A486_30min_R1 2 VSPAAAQLADTLFSK 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 VS(1)PAAAQLADTLFSK;VS(1)PAAAQLADTLFSK ; 226.57 8.05E-34 103137000 119710 142664 63403 50203 95951 134656 132777 118930 110699 148389 TRUE FALSE FALSE 111318.9472 131358.7851 87954.33959 116875.1211 83915.93087 118043.5118 99554.79023 91852.23522 120294.4785 111231.4285 1.000786816 1.180950265 0.790732806 1.050738291 0.754426442 1.061242432 0.895023929 0.82577592 1.081479219 1 16.76320496 -4.751272632 24.99463369 0.927337997 1.090868511 0.224103344 0.117620267 273.0185828 671194.5061 0.027523436 0.071041214 1.77E-05 4.751272632 0.163530514 VS(ph)PAGGTLDDKPK ddPTM_HeLa_A485_30min_R1 1 VSPAGGTLDDKPK 13 1 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 VS(0.997)PAGGT(0.003)LDDKPK 79.771 0.0026464 286010000 165020 114330 72580 291270 151950 130510 207690 192580 123450 408430 TRUE FALSE FALSE 201728.1297 127699.899 99430.36231 307181.3426 136821.3245 137343.3018 163315.3348 145349.453 148225.2826 306615.9176 0.657917995 0.416481636 0.324283107 1.001844082 0.446230338 0.447932719 0.532638149 0.474044055 0.483423313 1 18.22607307 -10.60603883 2.834306473 1.035970447 0.529348242 0.386505942 0.176999614 64552619.12 64637071.18 17267948.08 0.044399435 2.48E-11 10.60603883 -0.506622205 VS(ph)PAGGTLDDKPK ddPTM_HeLa_A486_30min_R1 2 VSPAGGTLDDKPK 13 1 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 VS(1)PAGGTLDDKPK;VS(0.999)PAGGT(0.001)LDDKPK ; 119.54 5.36E-05 552980000 598530 563910 147328 296080 345020 741130 852370 675820 428750 1180740 TRUE FALSE FALSE 556576.1378 519223.7179 204377.3472 689289.2031 301744.3744 649696.9159 639098.0105 521950.539 465914.3952 885075.0187 0.628846285 0.586643739 0.230915282 0.778791841 0.340925196 0.734058585 0.722083436 0.589724631 0.526412321 1 19.75544022 -14 0.212504205 3.084449623 0.511443705 0.386864076 0.162900649 152.0925717 1.518188028 135.2246817 0.331877554 1.00E-14 14 -2.573005918 VS(ph)PAHS(ph)PPENGLDK ddPTM_HeLa_A485_30min_R1 4 VSPAHSPPENGLDK 14 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK ;;; 178.77 2.70E-17 6322470000 1487070 1123220 800890 2110560 1215220 1168050 1794330 1421930 983700 2421450 TRUE FALSE FALSE 1817863.591 1254570.808 1097172.539 2225854.549 1094228.43 1229207.292 1410956.737 1073199.438 1181119.567 1817827.078 1.000020086 0.690148597 0.603562656 1.224458902 0.60194308 0.676195941 0.776177643 0.590374877 0.649742531 1 20.79378354 VS(ph)PAHS(ph)PPENGLDK ddPTM_HeLa_A486_30min_R1 4 VSPAHSPPENGLDK 14 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK ;;; 258.87 1.11E-41 6693100000 2572730 2622030 1056640 1128950 1756400 2789140 3172800 2756710 1860200 4043570 TRUE FALSE FALSE 2392394.913 2414250.794 1465799.306 2628252.654 1536095.934 2445044.265 2378931.882 2129067.312 2021443.634 3031033.753 0.789299991 0.796510693 0.483597157 0.867114281 0.506789452 0.806670088 0.784858261 0.702422832 0.66691558 1 21.53137849 -11.08273627 2.398461921 1.457119429 0.710602875 0.336122725 0.12159728 17448879.81 5301719.207 43586996.56 0.028582262 8.27E-12 11.08273627 -0.746516554 VS(ph)PASPAGSPSADFAVHGESLGDR ddPTM_HeLa_A486_30min_R1 1 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-3;Q96C92;Q96C92-2;Q96C92-4 A0A0A0MRP9;Q96C92-4 SDCCAG3 Serologically defined colon cancer antigen 3 1 0 VS(0.489)PAS(0.489)PAGS(0.02)PS(0.001)ADFAVHGESLGDR 63.085 0.012827 316870000 44255 46315 38809 10823 59074 43928 43589 52201 36916 46801 TRUE FALSE FALSE 41152.95303 42644.83072 53836.88414 25196.49096 51664.38808 38508.60999 32682.57116 40315.97184 40115.9086 35081.72498 1.173059565 1.215585344 1.534613369 0.718222692 1.472686651 1.097682911 0.931612433 1.149201525 1.143498748 1 15.09843207 -5.854172329 0.694183801 1.066046925 1.258803905 0.089543704 0.216723401 2.120309553 2.236908256 0.138524408 0.224809078 1.40E-06 5.854172329 0.19275698 VS(ph)PENLVDK ddPTM_HeLa_A485_30min_R1 5 VSPENLVDK 9 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK ;;;; 171.26 5.52E-06 2176404000 2924520 2097780 1483950 4696020 2947870 2252880 3638260 2637920 2073510 6028270 TRUE FALSE FALSE 3575069.385 2343097.123 2032924.857 4952551.682 2654369.712 2370837.313 2860916.029 1990965.984 2489644.438 4525533.231 0.78997749 0.517750507 0.449212226 1.094357599 0.586531924 0.523880213 0.63217214 0.43994064 0.550132838 1 22.10965636 -10.00086806 4.702606362 1.00000724 0.617520941 0.275123608 0.184774432 125573848.5 9.393926305 10411.94997 0.045379234 9.98E-11 10.00086806 -0.382486299 VS(ph)PENLVDK ddPTM_HeLa_A486_30min_R1 4 VSPENLVDK 9 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 0 VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK ;;; 154.85 4.40E-05 2171440000 1671640 1664420 779130 751170 1309350 1910980 2238200 2049610 1306260 2441710 TRUE FALSE FALSE 1554466.668 1532525.297 1080830.002 1748761.722 1145119.114 1675222.717 1678178.687 1582958.546 1419487.669 1830289.923 0.849300785 0.837312864 0.590523932 0.955456127 0.625649029 0.915277244 0.916892272 0.864867651 0.775553452 1 20.80364076 VS(ph)PGLPSPNLENGAPAVGPVQPR ddPTM_HeLa_A485_30min_R1 1 VSPGLPSPNLENGAPAVGPVQPR 23 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 VS(0.999)PGLPS(0.001)PNLENGAPAVGPVQPR 239.22 1.08E-48 169860000 33855 38483 32397 34455 38642 31076 40270 35905 29833 60330 TRUE FALSE FALSE 41385.92795 42983.25209 44381.99845 36337.18941 34794.6668 32703.09131 31665.98552 27099.24245 35820.20946 45290.84129 0.913781391 0.94904954 0.979933187 0.802307671 0.768249514 0.722068533 0.699169735 0.598338244 0.790893003 1 15.46693172 -5.448693949 2.800039223 0.738037242 0.948169205 0.398403885 0.098273277 0.234679824 3.599845399 0.028663825 0.044191872 3.56E-06 5.448693949 0.210131962 VS(ph)PGLPSPNLENGAPAVGPVQPR ddPTM_HeLa_A486_30min_R1 2 VSPGLPSPNLENGAPAVGPVQPR 23 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 VS(0.827)PGLPS(0.173)PNLENGAPAVGPVQPR;VS(0.952)PGLPS(0.048)PNLENGAPAVGPVQPR ; 181.61 9.75E-21 365740000 82118 87475 55708 31805.3 89705 95347 109715 96870 72697 102992 TRUE FALSE FALSE 76361.95226 80543.16242 77279.62951 74044.34575 78453.36243 83584.05656 82263.14655 74814.81566 78998.43449 77202.13283 0.989117133 1.04327639 1.001003815 0.959097152 1.01620719 1.082665122 1.065555361 0.969077057 1.023267513 1 16.23635308 -5.998030349 24.94158884 1.030844439 0.999816752 0.136205852 0.035180885 134.518482 1703359.865 0.011756013 0.01323121 1.00E-06 5.998030349 -0.031027688 VS(ph)PGQAAPAMAR ddPTM_HeLa_A485_30min_R1 3 VSPGQAAPAMAR 12 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 VS(1)PGQAAPAMAR;VS(1)PGQAAPAMAR;VS(1)PGQAAPAMAR ;; 139.77 8.07E-05 619850000 307795 320796 325310 474440 514010 321774 472080 443450 397200 667450 TRUE FALSE FALSE 376262.9359 358310.3016 445655.7063 500357.4559 462833.3596 338621.5891 371216.2515 334693.1922 476914.3967 501066.9985 0.750923403 0.715094594 0.889413407 0.998583937 0.923695556 0.675801021 0.740851528 0.667960958 0.95179766 1 18.934644 -6.240528507 24.97519813 0.782377852 0.857568026 0.016684286 0.126166947 2427.507563 2899330.355 0.043149072 0.043102354 5.75E-07 6.240528507 0.075190174 VS(ph)PGQAAPAMAR ddPTM_HeLa_A486_30min_R1 3 VSPGQAAPAMAR 12 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 VS(1)PGQAAPAMAR;VS(1)PGQAAPAMAR;VS(1)PGQAAPAMAR ;; 169.52 1.59E-10 783070000 486640 541550 392960 203660 602880 626610 651730 596780 497860 640770 TRUE FALSE FALSE 452529.049 498635.6057 545124.6358 474130.7724 527261.1688 549305.2291 488660.2607 460906.2216 541014.9057 480317.0213 0.942146601 1.038138529 1.13492675 0.987120488 1.097735757 1.143630571 1.017370276 0.959587525 1.126370463 1 18.87362741 -4.292271872 4.258439144 1.058856016 0.936132689 0.23296326 0.062713953 0.279396274 11.06328831 0.015667531 0.096710894 5.10E-05 4.292271872 -0.122723327 VS(ph)PGQAAPAMARPR ddPTM_HeLa_A485_30min_R1 6 VSPGQAAPAMARPR 14 1 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR ;;;;; 148.33 3.33E-08 3279890000 467996 611834 562620 520787 723320 576948 742221 722615 543910 667437 TRUE FALSE FALSE 572100.0956 683382.6641 770756.5506 549236.2751 651303.7211 607156.1051 583639.42 545392.5382 653067.748 501057.2392 1.14178591 1.36388143 1.538260483 1.096154755 1.299858919 1.211749991 1.164815862 1.088483502 1.303379528 1 18.9346159 -7.936726975 0.227850996 0.942705232 1.366352274 0.280661362 0.127384397 3.839980124 0.748005016 0.610895151 0.403586405 1.16E-08 7.936726975 0.423647042 VS(ph)PGQAAPAMARPR ddPTM_HeLa_A486_30min_R1 5 VSPGQAAPAMARPR 14 1 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR ;;;; 152.32 2.18E-08 3110300000 593040 616934 492104 241194 746251 616825 693726 736205 523464 703705 TRUE FALSE FALSE 551470.9585 568045.903 682659.8478 561511.8213 652649.2411 540727.4029 520148.4173 568587.1927 568838.281 527492.6876 1.045457068 1.076879199 1.294159832 1.064492143 1.237266897 1.025089855 0.98607702 1.077905355 1.078381358 1 19.00879157 -6.296727991 24.83875795 1.035396421 1.143905384 0.338579659 0.076961075 690.788532 486226.5688 0.027074049 0.023878339 5.05E-07 6.296727991 0.108508964 VS(ph)PPAS(ph)PTLEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_HeLa_A486_30min_R1 2 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 2 0 VS(0.985)PPAS(0.83)PT(0.183)LEVELGS(0.002)AELPLQGAVGPELPPGGGHGR;VS(0.991)PPAS(0.91)PT(0.087)LEVELGS(0.011)AELPLQGAVGPELPPGGGHGR ; 57.229 0.013044 101290000 10477 11751.6 11839.8 5234.21 13191.8 12350.9 13765.7 13557.7 11906 16439.8 TRUE FALSE FALSE 9742.616403 10820.36042 16424.48764 12185.5054 11537.16144 10827.17153 10321.37626 10470.90767 12938.02167 12323.16707 0.79059355 0.878050289 1.332813841 0.988829035 0.936217237 0.878602998 0.837558738 0.849692908 1.049894202 1 13.58908546 -5.787154078 4.164040216 0.909339667 1.013996422 0.048885622 0.144302102 0.552867303 21.33447197 0.047704338 0.057352381 1.63E-06 5.787154078 0.104656756 VS(ph)PPASPTLEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_HeLa_A485_30min_R1 2 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 VS(0.972)PPAS(0.014)PT(0.014)LEVELGS(0.001)AELPLQGAVGPELPPGGGHGR;VS(0.946)PPAS(0.029)PT(0.026)LEVELGSAELPLQGAVGPELPPGGGHGR ; 95.227 6.08E-05 120233000 7806 7380.2 9991.3 11171.7 12512.2 7205.6 12109.6 8488.4 10360.5 13063.1 TRUE FALSE FALSE 9542.41777 8243.250191 13687.49764 11781.98168 11266.44144 7582.874074 9522.285034 6406.606591 12439.75732 9806.709579 0.973049899 0.84057248 1.395727847 1.201420475 1.14885032 0.773233266 0.970996944 0.653288092 1.268494516 1 13.25955344 -6.23980838 24.09429962 0.913895206 1.117588017 0.160491807 0.201770426 879.0474177 979151.6367 0.066980477 0.066914181 5.76E-07 6.23980838 0.20369281 VS(ph)PPASPTLEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_HeLa_A486_30min_R1 1 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 VS(0.998)PPAS(0.002)PT(0.001)LEVELGSAELPLQGAVGPELPPGGGHGR 75.649 0.00045623 79030000 2468.2 4124.9 2944.9 1164.3 3016 1880.6 3190.6 3386.3 3970.7 3680 TRUE FALSE FALSE 2295.191926 3798.027901 4085.244147 2710.54924 2637.705157 1648.590693 2392.278133 2615.313412 4314.883473 2758.504047 0.832042254 1.376843331 1.480963623 0.982615647 0.956208551 0.597639396 0.867237493 0.9480912 1.564211398 1 11.42967038 -5.407528965 9.542820049 0.961469325 1.244342474 0.135791157 0.273824043 0.66256887 50.93334407 0.079842306 0.11846377 3.91E-06 5.407528965 0.282873149 VS(ph)PPQPPPPQPPRK ddPTM_HeLa_A485_30min_R1 2 VSPPQPPPPQPPRK 14 1 Q15637-5 Q15637-5 SF1 Splicing factor 1 1 0 VS(1)PPQPPPPQPPRK;VS(1)PPQPPPPQPPRK ; 76.85 0.0039336 648830000 380990 287130 224430 491990 370490 302470 421650 299780 323380 659110 TRUE FALSE FALSE 465739.9111 320707.3558 307455.9963 518866.1679 333602.7147 318306.8615 331561.0329 226258.485 388279.3998 494806.007 0.941257593 0.64814766 0.621366742 1.048625442 0.674209104 0.643296276 0.670082877 0.457267054 0.78471036 1 18.91650349 -4.251046393 23.49938194 0.711186377 0.941257898 0.118903152 0.169371359 1302.582585 2945106.551 0.041760119 0.538335216 5.61E-05 4.251046393 0.230071521 VS(ph)PPQPPPPQPPRK ddPTM_HeLa_A486_30min_R1 2 VSPPQPPPPQPPRK 14 1 Q15637-5 Q15637-5 SF1 Splicing factor 1 1 0 VS(1)PPQPPPPQPPRK;VS(1)PPQPPPPQPPRK ; 97.579 0.00051012 539890000 805120 889420 458640 346820 686040 953750 1038140 929060 706250 1158350 TRUE FALSE FALSE 748685.2456 818939.12 636237.6908 807414.4873 599990.4661 836086.022 778386.3917 717533.3192 767468.3186 868291.6204 0.862250917 0.943161377 0.732746552 0.929888609 0.691001102 0.962909237 0.896457335 0.826373654 0.883883134 1 19.72782014 VS(ph)PQPMISR ddPTM_HeLa_A485_30min_R1 2 VSPQPMISR 9 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 VS(1)PQPMISR;VS(1)PQPMISR ; 145.14 0.00010098 574180000 328020 455940 425140 375950 472150 383210 433060 451260 331515 439670 TRUE FALSE FALSE 400986.9173 509258.2168 582416.9776 396487.1965 425141.0882 403274.283 340533.1932 340587.7775 398047.0197 330068.3605 1.214860209 1.542887104 1.764534403 1.201227515 1.288039506 1.221790184 1.031705046 1.031870419 1.205953273 1 18.33240533 -5.900682305 1.272230783 1.082380913 1.493392728 0.531061019 0.155563303 0.348583473 1.18380554 0.067241843 0.083929954 1.26E-06 5.900682305 0.411011815 VS(ph)PQPMISR ddPTM_HeLa_A486_30min_R1 3 VSPQPMISR 9 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 VS(1)PQPMISR;VS(1)PQPMISR;VS(1)PQPMISR ;; 147.26 8.85E-05 1043210000 413210 518200 340689 172409 462760 495040 514780 475720 374630 503930 TRUE FALSE FALSE 384246.1128 477135.9447 472612.9048 401376.8651 404716.3257 433966.998 385976.5992 367408.9409 407103.23 377742.648 1.017216655 1.263124371 1.251150505 1.062566981 1.071407552 1.148843003 1.02179778 0.972643526 1.077726416 1 18.52704415 -6.226557994 0.815556435 1.012619298 1.173227555 0.331842149 0.07859726 0.709638125 1.029527219 0.052864781 0.052130107 5.94E-07 6.226557994 0.160608256 VS(ph)PSDTTPLVSR ddPTM_HeLa_A485_30min_R1 1 VSPSDTTPLVSR 12 0 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 VS(0.898)PS(0.101)DT(0.001)TPLVSR 107.2 0.00051405 457100000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VS(ph)PSDTTPLVSR ddPTM_HeLa_A486_30min_R1 1 VSPSDTTPLVSR 12 0 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 VS(0.828)PS(0.128)DT(0.022)T(0.022)PLVSR 76.233 0.0085055 43530000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VS(ph)PSFSAELK ddPTM_HeLa_A485_30min_R1 2 VSPSFSAELK 10 0 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 1 0 VS(0.995)PS(0.005)FSAELK;VS(0.769)PS(0.192)FS(0.039)AELK ; 126.12 0.00010865 184397000 308080 262790 222670 436090 364390 303200 459400 410440 265570 568250 TRUE FALSE FALSE 376611.3331 293521.0045 305044.8991 459912.4925 328110.0521 319075.0832 361245.437 309778.9465 318867.463 426595.7329 0.882829583 0.688054244 0.715067863 1.078099139 0.769135804 0.747956575 0.846809776 0.726165132 0.747469884 1 18.70251001 -11.41127329 2.175271577 2.574894423 0.799295663 0.233392376 0.108634789 5234634.854 491670.0082 40642142.11 0.027535367 3.88E-12 11.41127329 -1.775598759 VS(ph)PSPTTYR ddPTM_HeLa_A486_30min_R1 1 VSPSPTTYR 9 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 VS(0.6)PS(0.395)PT(0.004)T(0.001)YR 75.652 0.0063182 0 980120 964570 722910 180800 1272800 722370 617950 868410 809880 503340 TRUE FALSE FALSE 911418.6493 888133.9603 1002840.112 420911.5371 1113153.556 633251.3339 463332.374 670692.0003 880081.0505 377300.3878 2.415631361 2.353917433 2.657935546 1.115587343 2.950311189 1.678374458 1.228019872 1.777607503 2.332573936 1 18.52535406 -1.000000001 0.063404864 1.63E-12 6.219836279 0.299900781 0.545577528 397.9766823 1.882239193 35.57973097 225.5972961 0.1 1.000000001 6.219836279 VS(ph)PSTSYTPSR ddPTM_HeLa_A485_30min_R1 4 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VS(0.983)PS(0.009)T(0.004)S(0.004)YT(0.001)PSR;VS(0.973)PS(0.023)T(0.002)S(0.002)YTPSR;VS(0.895)PS(0.093)T(0.009)S(0.004)YTPSR;VS(0.872)PS(0.088)T(0.02)S(0.02)YT(0.001)PSR ;;; 163.59 6.34E-08 3186920000 1525528 1973182 1791115 1850733 2928591 1748704 2341181 2584060 2174274 2453950 TRUE FALSE FALSE 1864876.441 2203928.47 2453722.973 1951833.857 2637010.197 1840263.437 1840968.554 1950315.233 2610630.848 1842225.427 1.012295463 1.196340273 1.331934158 1.059497838 1.431426447 0.99893499 0.999317742 1.058673496 1.417107163 1 20.81301818 VS(ph)PSTSYTPSR ddPTM_HeLa_A486_30min_R1 3 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VS(0.684)PS(0.316)TSYTPSR;VS(0.84)PS(0.017)T(0.117)S(0.026)YTPSR;VS(0.604)PS(0.045)T(0.175)S(0.175)YTPSR ;; 167.84 4.53E-08 1877000000 1467670 1573990 1095540 641168 1757500 1552140 1769570 1809630 1252070 1824530 TRUE FALSE FALSE 1364793.912 1449261.3 1519762.428 1492671.507 1537057.962 1360652.748 1326804.869 1397616.753 1360600.436 1367655.812 0.997907441 1.059668147 1.111217028 1.09140874 1.123863145 0.994879512 0.970130685 1.021906784 0.994841263 1 20.38327377 -6.282736086 24.3122751 0.996081998 1.078582633 0.584270957 0.03391874 433.5848842 494978.0498 0.012661159 0.011178667 5.22E-07 6.282736086 0.082500635 VS(ph)RLSTSTTIENIEITIK ddPTM_HeLa_A485_30min_R1 1 VSRLSTSTTIENIEITIK 18 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 VS(0.446)RLS(0.446)T(0.09)S(0.007)T(0.01)T(0.002)IENIEITIK 163.18 2.45E-12 131180000 93457 89066 63291 93843 102720 81939 126850 132040 76577 156020 TRUE FALSE FALSE 114246.1872 99481.49393 86704.97466 98969.40547 92492.83613 86229.19934 99747.46123 99656.98297 91945.30149 117127.0853 0.975403656 0.849346619 0.740264085 0.844974544 0.789679312 0.736202041 0.851617377 0.850844898 0.785004606 1 16.83771521 -10.48919081 8.264034647 1.000010719 0.821557067 0.390304753 0.065572184 1.31E-05 8.11E-07 0.064318921 0.015598693 3.24E-11 10.48919081 -0.178453652 VS(ph)RLSTSTTIENIEITIK ddPTM_HeLa_A486_30min_R1 2 VSRLSTSTTIENIEITIK 18 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 VS(0.433)RLS(0.317)T(0.07)S(0.054)T(0.103)T(0.023)IENIEITIK;VS(0.45)RLS(0.271)T(0.024)S(0.053)T(0.08)T(0.122)IENIEITIK ; 211.68 4.29E-26 463190000 269160 267200 159303 154153 225690 225100 303320 269090 210220 299970 TRUE FALSE FALSE 250293.2739 246026.0989 220989.3879 358875.9745 197381.8557 197329.4506 227426.1278 207824.0812 228442.0389 224855.5595 1.113129133 1.094151727 0.982805977 1.596028914 0.877816213 0.877583152 1.011432087 0.924255916 1.015950147 1 17.77863903 VS(ph)SGVYEPVVIESH ddPTM_HeLa_A486_30min_R1 2 VSSGVYEPVVIESH 14 0 Q5T9C2-3;Q5T9C2 Q5T9C2-3 FAM102A Protein FAM102A 1 0 VS(0.5)S(0.5)GVYEPVVIESH;VS(0.5)S(0.5)GVYEPVVIESH ; 136.27 3.60E-05 0 61954 62715 50915 26121 77536 55052 66132 66961 53543 61512 TRUE FALSE FALSE 57611.34453 57745.235 70630.65155 60811.00808 67810.71189 48260.24397 49585.07413 51715.44205 58184.15035 46108.99482 1.249459997 1.252363779 1.531819373 1.318853476 1.470661248 1.046655737 1.075388312 1.121591183 1.261882862 1 15.49276059 -6.267574323 24.99110757 1.107095855 1.36513946 0.61744683 0.103661266 356.4012051 1451819.518 0.036662548 0.033149459 5.40E-07 6.267574323 0.258043605 VS(ph)SGYVPPPVATPFSSK ddPTM_HeLa_A485_30min_R1 2 VSSGYVPPPVATPFSSK 17 0 Q15942;Q15942-2;H7C3R3 Q15942 ZYX Zyxin 1 0 VS(0.993)S(0.007)GYVPPPVATPFSSK;VS(0.993)S(0.007)GYVPPPVATPFSSK ; 222.51 3.37E-34 412370000 1045860 898830 687120 1242420 1382090 1017750 1414860 1415970 851930 1610740 TRUE FALSE FALSE 1278507.949 1003940.35 941314.2814 1310290.259 1244484.267 1071037.816 1112563.603 1068701.137 1022904.537 1209212.161 1.057306558 0.830243345 0.778452542 1.083590043 1.029169493 0.885731926 0.920073117 0.883799528 0.845926438 1 20.20563596 -9.563592979 11.869581 0.999998433 0.922174675 0.052693237 0.096690121 0 0 0.096820456 0.02348241 2.73E-10 9.563592979 -0.077823757 VS(ph)SGYVPPPVATPFSSK ddPTM_HeLa_A486_30min_R1 2 VSSGYVPPPVATPFSSK 17 0 Q15942;Q15942-2;H7C3R3 Q15942 ZYX Zyxin 1 0 VS(0.993)S(0.007)GYVPPPVATPFSSK;VS(0.992)S(0.008)GYVPPPVATPFSSK ; 165.58 6.22E-12 539720000 456570 554280 343110 257627 580430 597520 730310 714060 422380 544950 TRUE FALSE FALSE 424566.8007 510356.8341 475971.3808 599768.6757 507627.0571 523804.0575 547578.7136 551484.1258 458992.2385 408490.973 1.039354181 1.249371144 1.165194367 1.468254418 1.242688555 1.282290411 1.340491589 1.350052173 1.123628841 1 18.63994467 -7.981192953 4.904243259 1.000536837 1.271344355 0.390864657 0.107938766 0.153851737 10.47137311 0.104612228 0.02729169 1.04E-08 7.981192953 0.270807518 VS(ph)SLAGFTDCHR ddPTM_HeLa_A485_30min_R1 2 VSSLAGFTDCHR 12 0 H0YLN8;Q96QT4 H0YLN8 TRPM7 Transient receptor potential cation channel subfamily M member 7 1 0 VS(0.5)S(0.5)LAGFTDCHR;VS(0.5)S(0.5)LAGFTDCHR ; 149.32 1.03E-07 187831000 150319 133710 88334 130587 111285 118917 141958 156084 107943 255970 TRUE FALSE FALSE 183756.943 149346.2214 121012.4225 137720.6371 100205.0747 125143.3102 111627.5136 117804.1543 129606.17 192161.3898 0.956263603 0.777191618 0.629743689 0.716692554 0.521463103 0.65124066 0.580905008 0.613047993 0.674465199 1 17.55195896 -4.38414727 2.14074205 0.650782289 0.998346831 0.318873336 0.122975538 0.502809664 3.171482619 0.030303566 0.303293698 4.13E-05 4.38414727 0.347564542 VS(ph)SLAGFTDCHR ddPTM_HeLa_A486_30min_R1 1 VSSLAGFTDCHR 12 0 H0YLN8;Q96QT4 H0YLN8 TRPM7 Transient receptor potential cation channel subfamily M member 7 1 0 VS(0.5)S(0.5)LAGFTDCHR 62.69 0.017719 178170000 42729 52589 31982 15439 52502 46681 61070 46608 38978 57743 TRUE FALSE FALSE 39733.91775 48421.65611 44366.28691 35942.77224 45916.7096 40921.97284 45789.64007 35996.37585 42356.64442 43283.77696 0.917986381 1.118702191 1.0250096 0.830398241 1.060829549 0.945434426 1.057893818 0.831636663 0.978580138 1 15.40153877 -5.04050198 24.92762161 0.956366181 1.031722408 0.094791552 0.086985097 935.6207469 575842.8943 0.022544415 0.039055011 9.11E-06 5.04050198 0.075356226 VS(ph)SPAPMEGGEEEEELLGPK ddPTM_HeLa_A486_30min_R1 1 VSSPAPMEGGEEEEELLGPK 20 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 VS(0.53)S(0.47)PAPMEGGEEEEELLGPK 54.805 0.02117 38087000 28579 26778 12605 11693 24039 36372 32364 37421 20306 33854 TRUE FALSE FALSE 26575.75968 24656.01376 17485.99357 27221.89493 21023.80447 31884.79244 24266.18489 28901.05519 22066.14043 25376.73805 1.047248848 0.971599018 0.689055998 1.072710562 0.828467568 1.256457484 0.956237356 1.138879833 0.869542034 1 14.63121902 -6.20575026 24.99991233 1.047406239 0.920034024 0.158746698 0.14076674 540.3255574 242562.0811 0.044520964 0.044520942 6.23E-07 6.20575026 -0.127372215 VS(ph)SPLSPLS(ph)PGIKSPTIPR ddPTM_HeLa_A486_30min_R1 1 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 2 0 VS(0.5)S(0.5)PLS(0.013)PLS(0.525)PGIKS(0.405)PT(0.057)IPR 85.805 0.0008859 145000000 108640 117400 57874 76569 121520 126150 162270 159810 83920 166690 TRUE FALSE FALSE 101024.897 108096.7964 80284.36272 178256.5016 106277.8285 110586.8956 121668.3297 123424.7516 91194.25317 124949.739 0.808524274 0.865122227 0.642533257 1.426625641 0.850564629 0.885051033 0.973738166 0.987795193 0.729847488 1 16.93098836 VS(ph)SPTKPK ddPTM_HeLa_A485_30min_R1 3 VSSPTKPK 8 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 VS(0.53)S(0.464)PT(0.005)KPK;VS(0.839)S(0.161)PTKPK;VS(0.792)S(0.208)PTKPK ;; 98.254 0.0012322 4353030000 5843800 3824460 1604670 10290300 3471040 5030850 7686200 8169300 4125610 12651600 TRUE FALSE FALSE 7143733.149 4271697.329 2198304.209 10852433.03 3125451.07 5294257.527 6043980.58 6165766.366 4953582.085 9497788.955 0.752146966 0.449757028 0.231454312 1.142627309 0.329071438 0.557420001 0.636356589 0.649179129 0.52155108 1 23.17916027 -10.68564044 2.645599082 1.061406374 0.582486979 0.216495026 0.236493898 38558676.98 32445362.99 15890335.78 0.058227999 2.06E-11 10.68564044 -0.478919395 VS(ph)SPTKPK ddPTM_HeLa_A486_30min_R1 3 VSSPTKPK 8 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 VS(0.594)S(0.406)PTKPK;VS(0.612)S(0.388)PTKPK;VS(0.792)S(0.208)PTKPK ;; 119.68 0.000383 4047080000 9659220 4295560 3216830 5417230 4665840 14324500 11328450 8753520 8481480 16631400 TRUE FALSE FALSE 8982158.558 3955164.181 4462472.726 12611585.21 4080606.84 12557288.83 8493951.99 6760534.584 9216661.515 12466789.19 0.720486921 0.317256041 0.35794884 1.01161454 0.327318187 1.007259258 0.681326351 0.542283541 0.739297134 1 23.57158661 -5.232281407 24.98707233 0.728561906 0.450433121 0.247216606 0.229941484 1016.261778 870889.6113 0.059170626 0.102466029 5.86E-06 5.232281407 -0.278128785 VS(ph)SPTVNTTLR ddPTM_HeLa_A486_30min_R1 1 VSSPTVNTTLR 11 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 VS(0.498)S(0.498)PT(0.004)VNTTLR 142.51 1.10E-06 895630000 1228300 1462300 1023600 479730 1510400 1377100 1585400 1608400 1143900 1438200 TRUE FALSE FALSE 1142202.513 1346422.022 1419965.333 1116835.684 1320951.548 1207207.403 1188716.151 1242202.431 1243054.173 1078065.359 1.059492825 1.248924299 1.317142158 1.035962871 1.225298204 1.119790552 1.102638297 1.152251504 1.153041569 1 20.04001322 -13.99999956 0.157156221 0.398919054 1.206058501 0.257640654 0.081524249 179.6778222 1.636453362 33.51200897 0.362554028 1.00E-14 13.99999956 0.807139447 VS(ph)SQAEDTSSSFDNLFIDR ddPTM_HeLa_A485_30min_R1 1 VSSQAEDTSSSFDNLFIDR 19 0 H8Y6P7;P0CAP2-3;P0CAP2;Q9BZD3 H8Y6P7 GCOM1;POLR2M;GCOM2 DNA-directed RNA polymerase II subunit GRINL1A;Putative GRINL1B complex locus protein 2 1 0 VS(0.5)S(0.5)QAEDTSSSFDNLFIDR 74.786 0.0041561 22011000 61971 64764 58467 67297 69740 46244 67840 47011 46275 71239 TRUE FALSE FALSE 75756.23515 72337.58643 80096.37631 70973.2647 62796.44073 48665.26433 53345.4298 35481.47854 55561.96804 53480.42836 1.416522595 1.352599234 1.497676417 1.327088561 1.174194797 0.909963997 0.997475739 0.663447912 1.038921522 1 15.7067234 -6.001359449 1.741872252 0.89532095 1.416684084 0.822733367 0.104485693 0.132567991 0.814361302 0.038338363 0.042296007 9.97E-07 6.001359449 0.521363134 VS(ph)SQAEDTSSSFDNLFIDR ddPTM_HeLa_A486_30min_R1 1 VSSQAEDTSSSFDNLFIDR 19 0 H8Y6P7;P0CAP2-3;P0CAP2;Q9BZD3 H8Y6P7 GCOM1;POLR2M;GCOM2 DNA-directed RNA polymerase II subunit GRINL1A;Putative GRINL1B complex locus protein 2 1 0 VS(0.5)S(0.5)QAEDTSSSFDNLFIDR 77.221 0.0034155 32467000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VS(ph)SSGLTDSLFILK ddPTM_HeLa_A485_30min_R1 1 VSSSGLTDSLFILK 14 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 0 VS(0.534)S(0.438)S(0.028)GLTDSLFILK 80.596 0.0046313 33832000 107170 95554 75185 131970 119110 99637 138910 122350 109110 207160 TRUE FALSE FALSE 131009.5968 106728.2091 102999.0602 139179.1869 107250.9902 104853.8393 109230.7437 92343.47066 131007.3762 155518.8245 0.842403466 0.686271964 0.662293202 0.894934664 0.689633493 0.674219597 0.702363486 0.593776805 0.842389187 1 17.24672969 -8.005496189 18.85266508 1.000000004 0.718236201 0.530614979 0.083239924 6.211380352 21308.89808 0.080005827 0.020657415 9.87E-09 8.005496189 -0.281763803 VS(ph)SSSELDLPSGDHCEAGLLQLDVPLLR ddPTM_HeLa_A485_30min_R1 1 VSSSSELDLPSGDHCEAGLLQLDVPLLR 28 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 VS(0.25)S(0.25)S(0.25)S(0.25)ELDLPSGDHCEAGLLQLDVPLLR 93.295 0.0015382 26158000 10615 11025 13091 10345 17393 10178 10751 10383 11562 15038 TRUE FALSE FALSE 12976.27013 12314.27785 17933.90566 10910.12116 15661.29185 10710.90434 8453.961022 7836.55297 13882.38735 11289.30335 1.149430547 1.090791651 1.588575052 0.966412259 1.387268227 0.948765748 0.748847007 0.694157356 1.229693889 1 13.46266884 -6.39339786 5.888332396 0.887237273 1.231828459 0.355058668 0.208719178 0.245758227 10.75190703 0.072388843 0.063480725 4.04E-07 6.39339786 0.344591187 VS(ph)VELTNSLFK ddPTM_HeLa_A486_30min_R1 2 VSVELTNSLFK 11 0 P14923 P14923 JUP Junction plakoglobin 1 0 VS(1)VELTNSLFK;VS(1)VELTNSLFK ; 129.71 4.53E-05 79457000 81873 134510 126504 63312 152730 145296 149120 141065 108965 127188 TRUE FALSE FALSE 76134.12549 123850.9377 175489.7367 147393.5356 133573.1792 127370.8568 111808.5988 108947.5789 118410.1739 95339.29695 0.798559754 1.299054448 1.840686289 1.545989328 1.401029623 1.335974366 1.172744108 1.142735288 1.241987069 1 16.54078337 -6.691489805 2.54473768 1.143736397 1.406763641 0.168485104 0.248925643 0.542648777 7.161870328 0.120190977 0.08424339 2.03E-07 6.691489805 0.263027244 VS(ph)VS(ph)PGR ddPTM_HeLa_A485_30min_R1 1 VSVSPGR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 VS(1)VS(1)PGR 76.827 0.032061 1515900000 965680 822480 829620 1367200 1060000 797350 1109800 840220 888390 1587500 TRUE FALSE FALSE 1180492.184 918661.8814 1136530.961 1441886.674 954462.6781 839098.0131 872682.1638 634154.7276 1066681.724 1191765.466 0.990540688 0.770841166 0.953653209 1.209874523 0.800881302 0.704079819 0.732259986 0.532113697 0.895043324 1 20.18466892 -5.981666237 24.99011235 0.742212475 0.969373739 0.289589034 0.152793098 283.350707 386223.5187 0.047172432 0.053479917 1.04E-06 5.981666237 0.227161264 VS(ph)VS(ph)PGR ddPTM_HeLa_A486_30min_R1 4 VSVSPGR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 VS(1)VS(1)PGR;VS(1)VS(1)PGR;VS(1)VS(1)PGR;VS(1)VS(1)PGR ;;; 94.309 0.012169 4373000000 5423090 6335680 4045130 2289870 5557540 6352220 6648910 6215060 5322980 6923800 TRUE FALSE FALSE 5042959.396 5833617.643 5611512.668 5330933.084 4860461.511 5568547.681 4985282.393 4800026.512 5784380.192 5190035.414 0.971661847 1.124003437 1.081208936 1.027147728 0.936498718 1.072930575 0.96054882 0.924854289 1.114516517 1 22.30731295 -5.519130546 24.7799048 0.997728494 1.063581905 0.133152168 0.064925179 239.2096037 1581455.526 0.018423102 0.024313165 3.03E-06 5.519130546 0.065853411 VS(ph)VSPGRT(ph)SVTK ddPTM_HeLa_A485_30min_R1 1 VSVSPGRTSVTK 12 1 M0R088 M0R088 SRRM1 2 0 VS(0.5)VS(0.5)PGRT(0.59)S(0.4)VT(0.01)K 58.09 0.029798 216460000 400610 370420 294810 511200 523150 433950 619910 640110 366490 703790 TRUE FALSE FALSE 489724.3124 413737.3968 403872.4871 539125.5616 471063.3491 456670.951 487461.1643 483122.0188 440041.1814 528348.1053 0.926897073 0.783077279 0.764406048 1.020398401 0.891577625 0.864337255 0.922613632 0.914400968 0.83286223 1 19.01112925 -14 0.125475873 1.365220999 0.830098287 0.189343332 0.071585496 258.9033051 2.072313613 24.30247303 0.627599974 1.00E-14 14 -0.535122712 VS(ph)VSPGRT(ph)SVTK ddPTM_HeLa_A486_30min_R1 2 VSVSPGRTSVTK 12 1 M0R088 M0R088 SRRM1 2 0 VS(0.5)VS(0.5)PGRT(0.67)S(0.32)VT(0.01)K;VS(0.5)VS(0.5)PGRT(0.631)S(0.366)VT(0.003)K ; 68.919 0.0091824 373400000 1040150 1013180 524380 466720 1052950 1148380 1295940 1269730 762690 1309380 TRUE FALSE FALSE 967240.8563 932891.9269 727433.9794 1086547.747 920879.1926 1006704.551 971682.1049 980640.197 828800.5833 981502.7254 0.985469354 0.950473089 0.741143107 1.107024686 0.938233964 1.025676776 0.989994301 0.999121217 0.844420053 1 19.90463275 -5.276601351 24.9983885 0.986101624 0.898172948 0.199687459 0.085991711 1336.110229 2202916.628 0.023823369 0.035489294 5.29E-06 5.276601351 -0.087928676 VS(ph)VTPPEES(ph)QNSDTPPRPDRLPLDEK ddPTM_HeLa_A485_30min_R1 1 VSVTPPEESQNSDTPPRPDRLPLDEK 26 2 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 VS(0.519)VT(0.48)PPEES(0.334)QNS(0.334)DT(0.334)PPRPDRLPLDEK 58.627 0.017278 266310000 74767 48077 45925 65634 81631 62786 72755 63287 61356 99834 TRUE FALSE FALSE 91398.66121 53699.18694 62914.5686 69219.41923 73503.53102 66073.37787 57210.2999 47765.76402 73669.58641 74947.22111 1.219507006 0.716493369 0.839451652 0.923575527 0.980737243 0.881598769 0.763341176 0.637325351 0.982952874 1 16.19358737 -6.552896843 8.321807056 0.816356188 0.919066815 0.052902451 0.154209993 0.613028836 147.6210436 0.05735009 0.044648718 2.80E-07 6.552896843 0.102710628 VSAEAEVAPVS(ph)PEVTQEVVEEHCAS(ph)PEDK ddPTM_HeLa_A485_30min_R1 4 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VSAEAEVAPVS(0.997)PEVT(0.058)QEVVEEHCAS(0.945)PEDK;VSAEAEVAPVS(1)PEVTQEVVEEHCAS(1)PEDK;VSAEAEVAPVS(1)PEVTQEVVEEHCAS(1)PEDK;VSAEAEVAPVS(1)PEVTQEVVEEHCAS(1)PEDK ;;; 175.62 1.07E-14 4141770000 1349840 890160 823030 2572250 1436140 1002440 1559700 1079250 1059860 3201960 TRUE FALSE FALSE 1650107.251 994256.4686 1127503.046 2712765.504 1293152.859 1054926.208 1226457.353 814562.2453 1272564.18 2403770.3 0.686466278 0.413623743 0.469056068 1.128546061 0.537968565 0.438863151 0.510222359 0.338868587 0.529403405 1 21.19686761 -9.938791622 4.625836872 1.000005091 0.558711859 0.283893654 0.208915344 30237444.31 18561808.58 1505.836216 0.052985479 1.15E-10 9.938791622 -0.441293233 VSAEAEVAPVS(ph)PEVTQEVVEEHCAS(ph)PEDK ddPTM_HeLa_A486_30min_R1 4 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VSAEAEVAPVS(1)PEVTQEVVEEHCAS(1)PEDK;VSAEAEVAPVS(0.999)PEVT(0.001)QEVVEEHCAS(1)PEDK;VSAEAEVAPVS(0.998)PEVT(0.002)QEVVEEHCAS(1)PEDK;VSAEAEVAPVS(0.999)PEVT(0.001)QEVVEEHCAS(1)PEDK ;;; 201.62 1.32E-28 5339460000 868776 1173295 518475 677705 916353 1225070 1410660 1317640 841048 1499750 TRUE FALSE FALSE 807879.2888 1080318.831 719242.4052 1577731.489 801415.4621 1073933.319 1057697.948 1017642.136 913950.7178 1124202.838 0.718624132 0.960964333 0.639779923 1.403422439 0.712874434 0.955284298 0.940842623 0.90521221 0.812976704 1 20.10047093 VSAEAEVAPVS(ph)PEVTQEVVEEHCASPEDK ddPTM_HeLa_A485_30min_R1 2 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVS(1)PEVTQEVVEEHCASPEDK;VSAEAEVAPVS(1)PEVTQEVVEEHCASPEDK ; 313.31 6.59E-109 3187400000 1565590 1210120 1141500 2317680 1957650 1356290 1988720 1544260 1486470 3156270 TRUE FALSE FALSE 1913850.094 1351633.007 1563788.352 2444288.99 1762739.492 1427303.247 1563813.726 1165527.814 1784790.894 2369469.976 0.807712321 0.570436858 0.659973905 1.031576266 0.743938311 0.602372371 0.659984613 0.491893894 0.753244782 1 21.17613295 -8.026185827 23.74177937 1.000000009 0.694283962 0.296341768 0.140071002 1870.571704 1695981.665 0.143037983 0.036932248 9.41E-09 8.026185827 -0.305716047 VSAEAEVAPVS(ph)PEVTQEVVEEHCASPEDK ddPTM_HeLa_A486_30min_R1 2 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVS(1)PEVTQEVVEEHCASPEDK;VSAEAEVAPVS(1)PEVTQEVVEEHCASPEDK ; 325.81 3.28E-110 4632900000 1465360 1768440 987160 736980 1548460 1776930 2282770 2033290 1429150 2024100 TRUE FALSE FALSE 1362645.831 1628302.374 1369414.789 1715726.685 1354237.708 1557710.443 1711596.801 1570354.253 1553029.873 1517252.185 0.898101083 1.073191648 0.90256241 1.130811807 0.892559405 1.02666548 1.128089857 1.034998841 1.023580581 1 20.53302947 -6.515607434 24.89114458 1.05355443 0.98587349 0.138559149 0.078517625 623.4784017 2134303.67 0.027346105 0.022087103 3.05E-07 6.515607434 -0.06768094 VSAEAEVAPVSPEVTQEVVEEHCAS(ph)PEDK ddPTM_HeLa_A485_30min_R1 1 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVSPEVTQEVVEEHCAS(1)PEDK 205.53 7.31E-29 358720000 314910 179850 155360 495420 279380 203540 303190 220940 225250 611070 TRUE FALSE FALSE 384960.6431 200881.893 212834.1291 522483.5401 251563.9462 214197.0397 238410.9797 166754.1186 270455.6089 458741.4949 0.839166823 0.437897804 0.463952207 1.138949814 0.548378442 0.466923185 0.519706594 0.363503455 0.589559941 1 18.80732189 -9.961451538 5.483502678 1.000000829 0.589512538 0.235031326 0.218090382 2.27E-06 4.29E-07 0.216688356 0.05255454 1.09E-10 9.961451538 -0.410488291 VSAEAEVAPVSPEVTQEVVEEHCAS(ph)PEDK ddPTM_HeLa_A486_30min_R1 2 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVSPEVTQEVVEEHCAS(1)PEDK;VSAEAEVAPVSPEVTQEVVEEHCAS(1)PEDK ; 209.48 4.40E-29 1054690000 537490 691760 335050 345760 521370 755240 891960 773700 556740 909120 TRUE FALSE FALSE 499814.7266 636942.4183 464790.333 804946.7537 455974.913 662066.1675 668782.1738 597545.3998 604998.6715 681470.4346 0.733435673 0.934658917 0.682040349 1.181191014 0.669104469 0.971525886 0.981381055 0.876847137 0.887784181 1 19.37829154 -2.788153475 0.563567614 0.924216078 5.32E-16 0.125511126 0.142001 41.55156952 2.732956419 0.065940678 36.18919852 0.00162872 2.788153475 -0.924216078 VSAGEPGS(ph)HPSPAPR ddPTM_HeLa_A485_30min_R1 1 VSAGEPGSHPSPAPR 15 0 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 VSAGEPGS(0.85)HPS(0.15)PAPR 199.04 3.01E-25 180240000 74465 85668 57947 76062 77817 86126 104870 107860 80876 140920 TRUE FALSE FALSE 91029.48235 95686.12739 79384.00668 80217.07446 70069.26625 90635.42418 82463.66779 81407.16588 97107.07136 105791.2374 0.860463348 0.904480652 0.750383572 0.758258211 0.662335255 0.856738482 0.779494311 0.769507644 0.917912237 1 16.69086061 -7.935088588 3.601798214 0.998693455 0.791364238 0.527851744 0.064992058 0.167277087 4.374290258 0.066495421 0.01763252 1.16E-08 7.935088588 -0.207329217 VSAGEPGSHPS(ph)PAPR ddPTM_HeLa_A485_30min_R1 5 VSAGEPGSHPSPAPR 15 0 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 VSAGEPGS(0.002)HPS(0.998)PAPR;VSAGEPGS(0.002)HPS(0.998)PAPR;VSAGEPGS(0.001)HPS(0.999)PAPR;VSAGEPGSHPS(1)PAPR;VSAGEPGS(0.047)HPS(0.953)PAPR ;;;; 175.69 8.32E-13 13991970000 2707890 2855900 2256869 2475540 2519340 2880250 3325320 3113680 2524980 4742570 TRUE FALSE FALSE 3310250.788 3189872.662 3091778.759 2610772.482 2268505.664 3031055.436 2614838.217 2350045.098 3031720.326 3560334.58 0.929758346 0.895947443 0.868395565 0.733294139 0.63716081 0.851340055 0.734436093 0.660062993 0.851526804 1 21.76358139 -5.103686097 3.829388347 0.762296987 0.907943887 0.212735308 0.100477207 0.297781161 7.787991866 0.026550023 0.049978154 7.88E-06 5.103686097 0.1456469 VSAGEPGSHPS(ph)PAPR ddPTM_HeLa_A486_30min_R1 5 VSAGEPGSHPSPAPR 15 0 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 VSAGEPGS(0.1)HPS(0.9)PAPR;VSAGEPGS(0.001)HPS(0.999)PAPR;VSAGEPGS(0.004)HPS(0.996)PAPR;VSAGEPGS(0.003)HPS(0.997)PAPR;VSAGEPGSHPS(1)PAPR ;;;; 174.21 1.75E-12 11444050000 2437200 2860540 2662990 490220 3489610 2548890 2705330 2520360 2860430 2878100 TRUE FALSE FALSE 2266364.866 2633860.392 3694171.045 1141256.934 3051910.574 2234433.867 2028427.82 1946529.047 3108374.376 2157405.027 1.050505045 1.220846508 1.712321516 0.528995214 1.414621055 1.035704395 0.940216508 0.902254803 1.440793146 1 21.04086562 -5.244850796 24.99848145 1.04502296 1.317186471 0.175304291 0.288016447 1544.815611 2327985.866 0.075562214 0.130434196 5.69E-06 5.244850796 0.272163512 VSAGEPGSHPS(ph)PAPRR ddPTM_HeLa_A485_30min_R1 2 VSAGEPGSHPSPAPRR 16 1 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 VSAGEPGSHPS(1)PAPRR;VSAGEPGS(0.006)HPS(0.994)PAPRR ; 116.29 6.76E-05 243110000 174767 333200 181863 122054 227790 337830 384280 478930 191224 241550 TRUE FALSE FALSE 213643.3162 372164.8415 249141.6917 128721.501 205110.4278 355518.2564 302175.4387 361471.6666 229600.9028 181336.0304 1.178162529 2.052349115 1.373922717 0.709850661 1.131106859 1.96054946 1.666383884 1.993380277 1.266162617 1 17.46830608 -6.245823444 24.79922277 1.644949582 1.304016574 0.095253384 0.417679891 1621.016364 2574291.106 0.143191091 0.142693738 5.68E-07 6.245823444 -0.340933007 VSAGEPGSHPS(ph)PAPRRS(ph)PAGNK ddPTM_HeLa_A485_30min_R1 1 VSAGEPGSHPSPAPRRSPAGNK 22 2 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 2 0 VSAGEPGS(0.043)HPS(0.962)PAPRRS(0.995)PAGNK 63.085 0.010064 225510000 260540 370400 360390 288580 469270 446860 532260 643410 416150 460970 TRUE FALSE FALSE 318496.2241 413715.0579 493713.2581 304344.3947 422547.8311 470256.8986 418538.3028 485612.6887 499667.4878 346058.6625 0.920353277 1.195505568 1.426675045 0.879458969 1.221029487 1.358893591 1.209443219 1.403266964 1.443880885 1 18.40065709 -5.996944989 24.99194443 1.302171533 1.124290485 0.168386785 0.182062149 168.0061462 1374372.957 0.055945812 0.063103196 1.01E-06 5.996944989 -0.177881047 VSAGEPGSHPS(ph)PAPRRS(ph)PAGNK ddPTM_HeLa_A486_30min_R1 3 VSAGEPGSHPSPAPRRSPAGNK 22 2 A0A1B0GV68;C9JME2;Q9Y4F1;Q9Y4F1-2 A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 2 0 VSAGEPGS(0.01)HPS(0.99)PAPRRS(1)PAGNK;VSAGEPGS(0.033)HPS(0.973)PAPRRS(0.995)PAGNK;VSAGEPGS(0.035)HPS(0.968)PAPRRS(0.997)PAGNK ;; 70.647 0.0044425 488650000 628410 549910 600110 264674 1139210 750710 928540 940160 707690 884720 TRUE FALSE FALSE 584361.7041 506333.1289 832488.6635 616174.4479 996319.6591 658095.0329 696209.4709 726106.0915 769033.139 663180.3534 0.881150506 0.763492354 1.255297536 0.929120479 1.502335909 0.992331919 1.049804125 1.094884804 1.159613874 1 19.33904174 -4.753177607 24.99962899 1.125665832 0.822321326 0.370389183 0.156735896 179.8948104 544338.6663 0.038280691 0.097702047 1.77E-05 4.753177607 -0.303344506 VSALEEDMDDVES(ph)S(ph)EEEEEEDEKLER ddPTM_HeLa_A485_30min_R1 3 VSALEEDMDDVESSEEEEEEDEKLER 26 1 Q8NAV1 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 2 0 VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER ;; 175.04 2.86E-14 10200130000 4113420 3137720 2966800 7277680 4923590 4509290 7296450 5880730 3843270 9915370 TRUE FALSE FALSE 5028436.088 3504649.059 4064342.779 7675241.23 4433380.092 4745389.452 5737503.851 4438471.747 4614579.036 7443650.738 0.675533588 0.470823952 0.546014707 1.031112488 0.595592169 0.637508344 0.770791652 0.596276196 0.619934922 1 22.82757893 -11.55188497 2.151669299 6.218358319 0.661143629 0.331457428 0.144687435 3396579.615 226520.7552 86774124.54 0.037304243 2.81E-12 11.55188497 -5.557214691 VSALEEDMDDVES(ph)S(ph)EEEEEEDEKLER ddPTM_HeLa_A486_30min_R1 2 VSALEEDMDDVESSEEEEEEDEKLER 26 1 Q8NAV1 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 2 0 VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER ; 183.93 3.92E-20 10347200000 3946290 3934490 2216590 2861890 3835390 5334500 6514770 5772110 3582710 8067430 TRUE FALSE FALSE 3669675.45 3622706.683 3074913.01 6662624.552 3354319.623 4676383.627 4884705.64 4457926.557 3893262.187 6047293.018 0.606829442 0.599062535 0.508477595 1.10175322 0.554681179 0.773301974 0.807750778 0.737177204 0.643802471 1 22.52785805 -14 0.039166396 2.171788154 9.16E-08 0.244012431 0.159973767 1360.939292 3.975511536 196.2559037 60.38781525 1.00E-14 14 -2.171788062 VSAS(ph)LPR ddPTM_HeLa_A485_30min_R1 6 VSASLPR 7 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 VS(0.002)AS(0.998)LPR;VSAS(1)LPR;VS(0.005)AS(0.995)LPR;VSAS(1)LPR;VSAS(1)LPR;VS(0.001)AS(0.999)LPR ;;;;; 130.31 0.0016779 5456660000 2799290 2818940 3096910 2428830 3658010 2907850 3516990 3731800 2450770 3194550 TRUE FALSE FALSE 3421982.403 3148590.511 4242585.882 2561510.833 3293805.68 3060100.53 2765556.355 2816570.199 2942617.059 2398207.476 1.426891725 1.312893293 1.769065406 1.068093924 1.373444839 1.275994909 1.153176438 1.174448094 1.227006874 1 21.19352505 -6.280378616 0.269822692 0.99320367 1.577231532 0.40552004 0.15874396 3.039151468 0.484641322 0.263684831 0.604408359 5.24E-07 6.280378616 0.584027862 VSAS(ph)LPR ddPTM_HeLa_A486_30min_R1 6 VSASLPR 7 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 VS(0.001)AS(0.999)LPR;VSAS(1)LPR;VSAS(1)LPR;VSAS(1)LPR;VS(0.001)AS(0.999)LPR;VS(0.035)AS(0.965)LPR ;;;;; 121.35 0.0019444 7869660000 3272890 3353020 2877720 1069833 3904280 3048890 3634230 3701180 2880290 3657480 TRUE FALSE FALSE 3043477.312 3087314.484 3992050.252 2490625.29 3414568.796 2672748.951 2724907.215 2858502.11 3129955.856 2741623.202 1.110100509 1.126090005 1.456090045 0.908449158 1.245455172 0.974878294 0.993902887 1.042631281 1.141643335 1 21.38659888 -5.283263285 24.94640308 1.049072847 1.220293254 0.320376337 0.124308249 952.9504662 1089293.317 0.034319065 0.05095847 5.21E-06 5.283263285 0.171220407 VSASS(ph)PSLAVASQSDSK ddPTM_HeLa_A485_30min_R1 2 VSASSPSLAVASQSDSK 17 0 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 VSASS(0.99)PS(0.01)LAVASQSDSK;VSAS(0.103)S(0.896)PS(0.001)LAVASQSDSK ; 337.43 8.95E-92 393910000 473130 419120 335960 605790 630950 498950 679020 698800 401500 804770 TRUE FALSE FALSE 578376.1362 468132.4381 460245.5845 638882.7738 568130.4026 525074.2505 533941.8299 527418.2043 482077.3672 604155.6497 0.957329682 0.774854027 0.761799686 1.057480426 0.940370917 0.869104263 0.883781903 0.872983981 0.79793571 1 19.20456076 VSASS(ph)PSLAVASQSDSK ddPTM_HeLa_A486_30min_R1 4 VSASSPSLAVASQSDSK 17 0 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4;P04150-9;P04150-8 A0A494C0P1;P04150-9 NR3C1 Glucocorticoid receptor 1 0 VS(0.004)AS(0.371)S(0.613)PS(0.012)LAVASQSDSK;VSAS(0.012)S(0.916)PS(0.072)LAVASQSDSK;VSAS(0.001)S(0.997)PS(0.002)LAVASQSDSK;VSAS(0.022)S(0.978)PS(0.001)LAVASQSDSK ;;; 267.54 8.00E-56 492710000 976860 915430 535703 400542 964670 1000590 1191920 1174520 734270 1224020 TRUE FALSE FALSE 908387.1585 842887.9929 743141.5482 932482.0183 843672.0934 877147.3791 893689.0092 907107.4356 797917.1148 917517.425 0.990048945 0.918661564 0.809948158 1.016309874 0.919516154 0.956000786 0.974029468 0.988654178 0.869647914 1 19.80737603 -5.297683047 24.99958584 0.95877814 0.907463542 0.161538714 0.056641633 1087.460359 750088.9794 0.015727951 0.023329017 5.04E-06 5.297683047 -0.051314598 VSASS(ph)PTTK ddPTM_HeLa_A485_30min_R1 2 VSASSPTTK 9 0 Q9BVI0;Q5JWZ0;Q5JXL1 Q9BVI0 PHF20 PHD finger protein 20 1 0 VSAS(0.026)S(0.829)PT(0.134)T(0.011)K;VSAS(0.022)S(0.968)PT(0.009)T(0.001)K ; 110.74 0.00090617 895140000 1908720 1425610 1183900 2675200 2108300 1630750 2498000 1990930 1602800 3346200 TRUE FALSE FALSE 2333308.179 1592322.688 1621873.876 2821339.402 1898390.249 1716133.548 1964281.893 1502651.296 1924467.258 2512053.922 0.928844782 0.633872814 0.645636569 1.123120558 0.75571238 0.683159519 0.781942567 0.59817637 0.766093132 1 21.260436 -5.975758627 24.99972488 0.739283412 0.822047805 0.027473013 0.161911686 786.9314045 811545.3195 0.050461702 0.057215493 1.06E-06 5.975758627 0.082764393 VSASS(ph)PTTK ddPTM_HeLa_A486_30min_R1 2 VSASSPTTK 9 0 Q9BVI0;Q5JWZ0;Q5JXL1 Q9BVI0 PHF20 PHD finger protein 20 1 0 VSAS(0.033)S(0.958)PT(0.008)T(0.001)K;VSAS(0.001)S(0.994)PT(0.004)TK ; 148.76 7.97E-05 917410000 2238800 2497500 1276530 1196550 2265000 2910700 3209000 2977000 1993430 3120900 TRUE FALSE FALSE 2081871.681 2299589.004 1770836.603 2785628.87 1980902.58 2551607.428 2406074.259 2299202.087 2166222.117 2339406.326 0.88991453 0.982979732 0.756959825 1.190741787 0.846754391 1.090707244 1.028497799 0.982814341 0.925970873 1 21.15771103 -5.244244581 24.98593642 1.006051395 0.887254229 0.267278439 0.100146448 1194.707366 1736039.147 0.0256253 0.044245153 5.70E-06 5.244244581 -0.118797166 VSCHDS(ph)DDDIMR ddPTM_HeLa_A485_30min_R1 2 VSCHDSDDDIMR 12 0 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 1 0 VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR ; 211.75 8.77E-18 1702880000 763120 1274550 1196840 567720 1507670 900150 919340 1031280 1144320 898970 TRUE FALSE FALSE 932873.4113 1423597.535 1639600.921 598733.1061 1357561.081 947280.4621 722915.4987 778356.963 1373974.528 674873.3233 1.382294097 2.109429261 2.429494342 0.887178505 2.011579113 1.403641883 1.071186953 1.153337873 2.035899894 1 19.3642572 -5.257985746 24.99999411 1.388675775 1.98730821 0.28420504 0.440722997 399.48641 2891770.6 0.119506471 0.196807169 5.52E-06 5.257985746 0.598632435 VSCHDS(ph)DDDIMR ddPTM_HeLa_A486_30min_R1 2 VSCHDSDDDIMR 12 0 F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4;F5GWN9 F8WE42 NOL8 Nucleolar protein 8 1 0 VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR ; 241.27 6.02E-28 1887450000 1166770 1566500 1307380 95964 1596060 1159650 1233140 1177830 1388180 749050 TRUE FALSE FALSE 1084985.448 1442364.835 1813632.549 223409.0418 1395867.272 1016584.173 924595.3292 909663.8208 1508508.56 561483.0045 1.932356704 2.568848609 3.230075593 0.397891014 2.486036551 1.810534184 1.646702254 1.620109271 2.686650438 1 19.09888283 -5.223237211 24.99995934 1.72946347 2.576268852 0.269637028 0.682739793 787.2396495 515178.1876 0.177933507 0.308181884 5.98E-06 5.223237211 0.846805382 VSDEVGFGLEHVS(ph)R ddPTM_HeLa_A485_30min_R1 1 VSDEVGFGLEHVSR 14 0 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 VSDEVGFGLEHVS(1)R 87.411 0.00085039 0 38757 46682 51244 29747 66011 35478 48895 52226 50538 61157 TRUE FALSE FALSE 47378.36094 52141.05382 70201.28804 31372.00329 59438.71306 37335.57322 38448.18381 39417.49161 60680.51304 45911.68541 1.031945582 1.135681545 1.529050555 0.68331195 1.294631476 0.813204152 0.837437865 0.858550307 1.321679056 1 15.48657377 -5.264429738 24.99985501 0.967927854 1.222571447 0.218403253 0.224645971 403.8476962 3376235.68 0.061280656 0.095533103 5.44E-06 5.264429738 0.254643593 VSDEVGFGLEHVS(ph)R ddPTM_HeLa_A486_30min_R1 2 VSDEVGFGLEHVSR 14 0 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 VSDEVGFGLEHVS(1)R;VSDEVGFGLEHVS(1)R ; 180.02 1.94E-17 254590000 365240 502610 421300 169714 510550 423810 453130 484360 351520 308900 TRUE FALSE FALSE 339638.5621 462781.3531 584438.6428 395102.7689 446512.0583 371524.6312 339752.0813 374081.8015 381990.0366 231549.4294 1.466808029 1.998628778 2.524034045 1.70634309 1.928366049 1.604515425 1.467298288 1.615559159 1.64971271 1 17.82096068 -6.311503035 1.469521006 1.4669712 1.978306719 0.371497966 0.300584063 0.474699841 2.053562098 0.141123463 0.122759297 4.88E-07 6.311503035 0.51133552 VSDGVTKS(ph)PEKR ddPTM_HeLa_A485_30min_R1 4 VSDGVTKSPEKR 12 2 A0A669KB77;P11137-3;P11137;P11137-2 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 VSDGVT(0.001)KS(0.999)PEKR;VSDGVTKS(1)PEKR;VSDGVT(0.105)KS(0.895)PEKR;VSDGVT(0.026)KS(0.974)PEKR ;;; 145.7 8.42E-08 2014420000 1568270 815275 577228 3647650 1725910 1173170 2467870 2108370 1058170 4455970 TRUE FALSE FALSE 1917126.251 910614.3193 790768.6577 3846911.883 1554072.34 1234595.367 1940589.414 1591288.952 1270535.013 3345178.685 0.573101299 0.272216944 0.236390559 1.149986965 0.464570801 0.369067091 0.580115323 0.475696249 0.379810806 1 21.67365184 -10.93366137 2.525178591 1.338930019 0.501497411 0.276287693 0.242708152 38362224.32 19317859.41 76602773.97 0.061254919 1.17E-11 10.93366137 -0.837432608 VSDGVTKS(ph)PEKR ddPTM_HeLa_A486_30min_R1 4 VSDGVTKSPEKR 12 2 A0A669KB77;P11137-3;P11137;P11137-2 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 VSDGVTKS(1)PEKR;VSDGVTKS(1)PEKR;VSDGVT(0.002)KS(0.998)PEKR;VSDGVTKS(1)PEKR ;;; 139.34 2.53E-06 2574270000 2676560 2741440 999340 2666290 2567340 4378480 5844000 5217300 2351800 6058200 TRUE FALSE FALSE 2488946.966 2524198.31 1386311.211 6207257.867 2245320.278 3838307.655 4381769.388 4029434.683 2555655.918 4541187.288 0.548082871 0.555845454 0.305275058 1.366879953 0.494434635 0.845221175 0.964895106 0.887308633 0.562772631 1 22.11463811 -5.211731835 24.9999993 0.856517768 0.478345538 0.382213601 0.23496639 405.2628476 203822.8873 0.060975706 0.1056128 6.14E-06 5.211731835 -0.378172231 VSDILHSIFSSYK ddPTM_HeLa_A485_30min_R1 3 VSDILHSIFSSYK 13 0 H0Y8C6;O00410;O00410-3;O00410-2 H0Y8C6 IPO5 Importin-5 0 0 ;; ;; 220.69 1.33E-21 628868200 1732210 1930584 2083836 1427515.7 2907342 1609539 2299901 1883148 2042239 2783591.9 FALSE FALSE TRUE 2117534.138 2156349.005 2854733.652 1505497.268 2617876.822 1693811.973 1808508.363 1421303 2452097.635 2089693.668 1.013322752 1.031897181 1.366101499 0.720439216 1.252756259 0.810555154 0.865441854 0.680148972 1.173424446 1 20.99486004 -6.284782074 24.84035123 0.883393879 1.070666065 0.152003728 0.198126239 1286.463187 1368997.244 0.066625976 0.058797556 5.19E-07 6.284782074 0.187272186 VSDILHSIFSSYK ddPTM_HeLa_A486_30min_R1 4 VSDILHSIFSSYK 13 0 H0Y8C6;O00410;O00410-3;O00410-2 H0Y8C6 IPO5 Importin-5 0 0 ;;; ;;; 186.16 2.87E-10 565306700 1822562.5 1903737.9 1436333.1 113658.03 1872023.1 1594176.3 1789075.4 1698074.9 1786470.8 1154590.3 FALSE FALSE TRUE 1694810.28 1752878.776 1992519.743 264601.6378 1637216.507 1397503.037 1341429.812 1311460.314 1941323.527 865473.3738 1.958246587 2.025341078 2.302231129 0.305730535 1.891700607 1.614726783 1.549937702 1.515309834 2.243077125 1 19.72312991 VSDILHSIFSSYKEK ddPTM_HeLa_A485_30min_R1 2 VSDILHSIFSSYKEK 15 1 H0Y8C6;O00410;O00410-3;O00410-2 H0Y8C6 IPO5 Importin-5 0 0 ; ; 183.6 2.38E-11 78667000 98157 144126 91471 53749 210789 161963 236048 377140 109398 107337 FALSE FALSE TRUE 119991.686 160980.282 125309.9293 56685.17177 189802.107 170443.1322 185614.4165 284645.8237 131353.1751 80579.86129 1.489102663 1.997773133 1.555102321 0.70346574 2.355453385 2.115207566 2.303483941 3.532468524 1.630099296 1 16.2981317 -5.810688932 24.99987566 2.288066137 1.48494044 0.19872642 0.674823906 156.8721945 79629.92667 0.205555605 0.233078576 1.55E-06 5.810688932 -0.803125697 VSDILHSLFSTYK ddPTM_HeLa_A485_30min_R1 1 VSDILHSLFSTYK 13 0 O60518 O60518 RANBP6 Ran-binding protein 6 0 0 97.86 0.021558 0 9431.9 9050.5 8733.5 7366.3 10139 10651 12367 12075 10170 14685 FALSE FALSE TRUE 11529.99362 10108.87725 11964.38508 7768.702317 9129.52556 11208.66989 9724.689421 9113.587317 12211.02572 11024.29976 1.045870837 0.916963206 1.085273926 0.704688959 0.828127478 1.016723977 0.882114024 0.826681741 1.10764638 1 13.4283994 -9.715349941 14.0430389 1.000008271 0.926554262 0.020632642 0.123006828 0 0 0.117690785 0.028544208 1.93E-10 9.715349941 -0.073454009 VSDQNS(ph)PVLPK ddPTM_HeLa_A485_30min_R1 5 VSDQNSPVLPK 11 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK ;;;; 278.39 8.25E-35 14073090000 8676550 7176550 5978390 11714490 10837760 7663580 12050200 11214230 7228490 15397010 TRUE FALSE FALSE 10606618.61 8015785.095 8190045.243 12354422.93 9758714.561 8064833.199 9475576.329 8463922.509 8679181.639 11558818.77 0.917621327 0.693477877 0.708553824 1.068830922 0.84426573 0.697721226 0.8197703 0.732248051 0.750870985 1 23.46249064 VSDQNS(ph)PVLPK ddPTM_HeLa_A486_30min_R1 5 VSDQNSPVLPK 11 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK ;;;; 245.18 5.09E-22 14142900000 11651920 12515550 7020320 5161280 12204730 13127920 16059640 14861500 9934330 14400890 TRUE FALSE FALSE 10835180.58 11523772.24 9738775.915 12015720.68 10673898.96 11508330.71 12041348.21 11477860.87 10795445.72 10794813.41 1.003739497 1.067528618 0.902171769 1.113101285 0.988798838 1.066098159 1.115475345 1.063275523 1.000058576 1 23.36383497 -5.28986723 24.99178951 1.053086284 0.99878474 0.179123947 0.056226896 1249.565497 1098528.375 0.015504829 0.023002344 5.13E-06 5.28986723 -0.054301543 VSDQNS(ph)PVLPKK ddPTM_HeLa_A485_30min_R1 1 VSDQNSPVLPKK 12 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 VSDQNS(1)PVLPKK 113.59 0.00019065 584490000 348130 413770 258130 329610 564810 587280 803730 1035700 395270 586630 TRUE FALSE FALSE 425570.3175 462156.8022 353623.0287 347615.7597 508575.5332 618029.0727 632006.5196 781692.9511 474597.0634 440393.9371 0.966340091 1.049416813 0.802969793 0.789329122 1.154819561 1.403355089 1.435093598 1.774985723 1.077664844 1 18.74843508 -6.020973282 3.438036745 1.390028247 0.906877136 0.473331791 0.212572461 0.190571016 4.714522929 0.070421971 0.075170353 9.53E-07 6.020973282 -0.483151111 VSDQNS(ph)PVLPKK ddPTM_HeLa_A486_30min_R1 2 VSDQNSPVLPKK 12 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 VSDQNS(1)PVLPKK;VSDQNS(1)PVLPKK ; 112.5 0.00020952 770400000 1283360 1097770 546870 532290 1303690 1100530 1612540 1716920 717500 1701210 TRUE FALSE FALSE 1193403.091 1010778.707 758632.7097 1239198.02 1140169.044 964757.798 1209065.436 1326014.796 779693.4777 1275215.943 0.935843923 0.792633368 0.594905289 0.971755433 0.8940988 0.756544649 0.948126035 1.039835491 0.611420742 1 20.28231014 -5.308224964 24.99992163 0.887664495 0.776277051 0.121384158 0.140950878 879.5663349 469995.265 0.039109493 0.05800892 4.92E-06 5.308224964 -0.111387444 VSDS(ph)PSHIATK ddPTM_HeLa_A485_30min_R1 1 VSDSPSHIATK 11 0 Q9P2D3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 0 VS(0.009)DS(0.987)PS(0.004)HIATK 134.04 2.12E-05 492450000 667420 732950 584680 648560 936780 751030 908850 982400 736280 966510 TRUE FALSE FALSE 815885.2764 818662.1267 800977.4626 683989.1906 843510.894 790352.7695 714666.7729 741464.8597 884044.6424 725576.8443 1.124464325 1.128291418 1.103918171 0.942683323 1.162538332 1.089275072 0.984963589 1.021897082 1.218402502 1 19.46876889 -5.013918884 24.58489098 1.060175206 1.123809637 0.111089962 0.078056905 1158.384844 2046064.098 0.020770722 0.038037134 9.68E-06 5.013918884 0.063634432 VSDS(ph)PSHIATK ddPTM_HeLa_A486_30min_R1 1 VSDSPSHIATK 11 0 Q9P2D3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 0 VS(0.266)DS(0.725)PS(0.01)HIATK 169.04 2.93E-08 498240000 986970 1055400 653880 158710 1101700 1000800 1113600 1134800 811310 910940 TRUE FALSE FALSE 917788.4997 971766.2603 907079.8475 369484.9008 963514.5131 877331.4714 834965.5015 876430.8125 881635.004 682834.6948 1.344085921 1.42313545 1.328403279 0.541104463 1.411050904 1.284837279 1.222793024 1.283518279 1.291139731 1 19.38117684 -11.31885336 1.990053511 0.000283559 1.231913185 0.080074579 0.240170996 3044478.227 354084.2415 13699717.03 0.062159608 4.80E-12 11.31885336 1.231629625 VSEEAESQQQWDTSKGEQVSQNGLPAEQGS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VSEEAESQQQWDTSKGEQVSQNGLPAEQGSPR 32 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 VSEEAESQQQWDTSKGEQVSQNGLPAEQGS(1)PR 137.66 4.86E-07 324520000 121830 118110 72321 46899 142610 115130 140250 167370 88650 121200 TRUE FALSE FALSE 113290.3461 108750.5335 100325.628 109183.2421 124722.524 100926.4312 105157.9666 129263.5047 96334.25338 90850.73112 1.246994325 1.197024307 1.104290816 1.20178716 1.372829062 1.110903896 1.157480686 1.422811936 1.060357492 1 16.4712105 -10.50459116 6.037437268 0.999784084 1.211487262 0.245625855 0.109370162 0.000307449 2.52E-05 0.102428237 0.024817384 3.13E-11 10.50459116 0.211703178 VSEEENLKKT(ph)PK ddPTM_HeLa_A485_30min_R1 2 VSEEENLKKTPK 12 2 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein 1 0 VSEEENLKKT(1)PK;VSEEENLKKT(1)PK ; 97.579 0.0013199 1259470000 1434190 730650 329320 3284900 1336210 1339980 2875500 2605900 724860 4390500 TRUE FALSE FALSE 1753220.618 816093.1617 451149.1721 3464345.769 1203172.241 1410139.281 2261125.934 1966798.939 870332.7532 3296029.151 0.531919027 0.247598891 0.136876572 1.051066483 0.365036893 0.427829736 0.686015151 0.596717701 0.264054932 1 21.65229757 -14 0.285209953 4.835711658 0.452998798 0.271635378 0.250841877 333.3826789 3.173563101 760.2052244 0.282323801 1.00E-14 14 -4.38271286 VSEEENLKKT(ph)PK ddPTM_HeLa_A486_30min_R1 2 VSEEENLKKTPK 12 2 Q9Y3B9 Q9Y3B9 RRP15 RRP15-like protein 1 0 VSEEENLKKT(1)PK;VSEEENLKKT(1)PK ; 95.767 0.0015151 1516800000 1564400 1415000 399340 1894100 979830 2176100 3672400 3055300 1028300 4314200 TRUE FALSE FALSE 1454743.639 1302870.247 553975.1427 4409560.523 856930.5848 1907634.907 2753526.677 2359674.887 1117433.872 3233896.239 0.449842398 0.402879422 0.171302695 1.363544219 0.264983946 0.589887481 0.851457955 0.729669325 0.345537948 1 21.62484196 -13.9999996 0.059975894 2.350697483 2.82E-09 0.135129723 0.327805781 870.2920674 3.80481336 177.4986701 29.54983722 1.00E-14 13.9999996 -2.35069748 VSEEQTQPPS(ph)PAGAGMSTAMGR ddPTM_HeLa_A485_30min_R1 9 VSEEQTQPPSPAGAGMSTAMGR 22 0 Q16666-3;Q16666-2;Q16666;H3BM18;X6RHM1 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 VSEEQT(0.001)QPPS(0.999)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQT(0.001)QPPS(0.965)PAGAGMS(0.016)T(0.018)AMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQT(0.001)QPPS(0.999)PAGAGMSTAMGR ;;;;;;;; 307.4 1.08E-88 7963890000 3531215 4858959 4431883 3944166 5139764 4585010 5705262 6411575 4451889 6848726 TRUE FALSE FALSE 4316721.594 5427171.988 6071420.948 4159625.801 4628031.049 4825074.034 4486286.166 4839126.178 5345342.287 5141464.65 0.839589862 1.055569251 1.18087381 0.809035184 0.90013865 0.938462941 0.87256968 0.941196042 1.039653611 1 22.29374797 -10.84963818 3.900221582 1.011973516 0.953797431 0.017210344 0.106378146 0.014274397 0.000550308 0.132748888 0.025833769 1.41E-11 10.84963818 -0.058176085 VSEEQTQPPS(ph)PAGAGMSTAMGR ddPTM_HeLa_A486_30min_R1 6 VSEEQTQPPSPAGAGMSTAMGR 22 0 Q16666-3;Q16666-2;Q16666;H3BM18;X6RHM1 Q16666-3 IFI16 Gamma-interferon-inducible protein 16 1 0 VSEEQT(0.001)QPPS(0.999)PAGAGMSTAMGR;VSEEQT(0.056)QPPS(0.944)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQT(0.114)QPPS(0.886)PAGAGMSTAMGR ;;;;; 370.9 1.77E-142 5869490000 3602878 3722266 3148361 1047929 4064419 3269084 3812711 3626220 3603643 3991350 TRUE FALSE FALSE 3350334.857 3427300.086 4367490.695 2439631.671 3554621.67 2865777.654 2858730.381 2800608.866 3916009.677 2991889.981 1.119805501 1.145530119 1.459776504 0.815414901 1.188085689 0.957848608 0.95549315 0.936066795 1.308874892 1 21.51262569 -5.264974398 24.99446405 1.021785273 1.232086641 0.293441719 0.155213279 389.1383369 2751422.874 0.042052652 0.065333222 5.43E-06 5.264974398 0.210301368 VSFELFADK ddPTM_HeLa_A485_30min_R1 2 VSFELFADK 9 0 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ; ; 105.4 0.01217 161780000 105663 70473 69924 154148 105900 87149 124916 98916 74066 203736 FALSE FALSE TRUE 129167.3698 78714.20432 95791.79738 162568.7149 95356.22416 91711.98688 98226.67613 74656.69591 88930.36683 152948.3647 0.844516187 0.514645609 0.626301547 1.062899334 0.623453702 0.599627116 0.64222116 0.488116993 0.581440455 1 17.22268516 -10.37004509 5.02066131 1.000232363 0.661968582 0.28025393 0.161094463 0.000433533 5.44E-05 0.161390616 0.039116372 4.27E-11 10.37004509 -0.338263781 VSFELFADK ddPTM_HeLa_A486_30min_R1 2 VSFELFADK 9 0 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ; ; 138.26 0.0020041 81675000 110824 178941 102176 69595 155847 220790 206382 191985 176228 226209 FALSE FALSE TRUE 103055.8099 164761.0635 141741.2836 162020.6771 136299.216 193551.1746 154743.0407 148274.2065 191503.5849 169564.794 0.60776655 0.971670236 0.835912221 0.955508943 0.803817896 1.141458495 0.912589442 0.874439811 1.129382936 1 17.37147714 -3.862831268 1.813571463 0.954694106 5.09E-22 0.480030651 0.10775378 3.062421142 3.887161415 0.028081921 7.152094361 0.000137141 3.862831268 -0.954694106 VSFELFADK(ac)VPK ddPTM_HeLa_A486_30min_R1 1 VSFELFADKVPK 12 1 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 VSFELFADK(1)VPK 178.81 1.86E-08 38766000 38464 57548 67966 27016 63123 74968 98936 84722 56986 143040 FALSE TRUE FALSE 35767.87223 52987.68689 94284.25539 62894.61331 55205.52474 65719.21038 74181.16636 65432.65007 61925.59236 107221.853 0.333587522 0.494187383 0.879338053 0.586583906 0.514871952 0.612927389 0.691847457 0.610254797 0.577546374 1 16.71023945 -14 0.227762508 3.113846341 0.551219621 0.478681197 0.130718674 153.037448 1.53246058 149.1556813 0.244970061 1.00E-14 14 -2.56262672 VSFELFADKVPK ddPTM_HeLa_A485_30min_R1 5 VSFELFADKVPK 12 1 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;;; ;;;; 201.04 2.18E-14 2769570000 2777410 1961466 1572334 3279840 2907110 3674380 5247870 5711600 2004469 4632000 FALSE FALSE TRUE 3395235.273 2190842.386 2154005.777 3459009.354 2617667.921 3866764.855 4126619.703 4310821.145 2406747.542 3477327.646 0.976392109 0.630036226 0.619442859 0.994732078 0.7527815 1.111993246 1.186721564 1.239693691 0.692125617 1 21.72954758 -6.260456576 24.95853768 1.069876107 0.786909186 0.322962301 0.180209814 97.88442955 2485820.705 0.061385934 0.058049945 5.49E-07 6.260456576 -0.282966921 VSFELFADKVPK ddPTM_HeLa_A486_30min_R1 4 VSFELFADKVPK 12 1 P62937;C9J5S7;F8WE65 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;; ;;; 155.08 8.27E-08 2851450000 2658040 3580870 1880350 1806890 4368100 4529330 5505960 5265310 3307420 5695140 FALSE FALSE TRUE 2471725.122 3297108.82 2608471.878 4206531.235 3820212.167 3970547.315 4128310.572 4066513.854 3594109.829 4269039.875 0.57898853 0.772330294 0.611020734 0.985357682 0.894864485 0.930079698 0.967034905 0.952559351 0.841901208 1 22.02548021 -5.262132953 24.99879181 0.935830439 0.665934888 0.808319389 0.063445621 24.98919879 900713.3483 0.016560544 0.026322008 5.47E-06 5.262132953 -0.269895551 VSGAGFS(ph)PSSK ddPTM_HeLa_A485_30min_R1 4 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VSGAGFS(0.962)PS(0.034)S(0.004)K;VSGAGFS(0.64)PS(0.358)S(0.001)K;VSGAGFS(0.911)PS(0.048)S(0.041)K;VSGAGFS(0.946)PS(0.027)S(0.027)K ;;; 167.03 4.87E-08 3554360000 2682080 2579150 1945380 3307020 3295650 2780200 4211330 4179090 2302760 4250450 TRUE FALSE FALSE 3278699.443 2880759.157 2665057.016 3487674.129 2967523.514 2925766.973 3311544.942 3154161.625 2764902.81 3190891.039 1.027518459 0.902807122 0.835207779 1.093009472 0.929998385 0.916912216 1.037811979 0.988489292 0.86649866 1 21.60552791 -5.235104735 24.99975521 0.973807201 0.919940756 0.100468609 0.074111408 1891.961829 1796056.279 0.020006529 0.034637629 5.82E-06 5.235104735 -0.053866445 VSGAGFS(ph)PSSK ddPTM_HeLa_A486_30min_R1 5 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VSGAGFS(0.985)PS(0.012)S(0.004)K;VSGAGFS(0.895)PS(0.094)S(0.011)K;VSGAGFS(0.987)PS(0.013)SK;VSGAGFS(0.972)PS(0.025)S(0.003)K;VSGAGFS(0.935)PS(0.065)SK ;;;; 173.06 2.31E-08 4016160000 5729770 5400730 3119674 2373361 5480060 6105630 7223350 6981750 4111610 6939500 TRUE FALSE FALSE 5328142.712 4972756.486 4327695.321 5525304.351 4792699.775 5352379.448 5415991.429 5392157.936 4468007.665 5201804.031 1.024287474 0.955967671 0.831960469 1.062190024 0.921353389 1.028946768 1.041175599 1.036593825 0.858934254 1 22.31058062 -5.292888104 24.99225893 0.994818784 0.939261306 0.108491863 0.072462654 1481.168395 1177078.77 0.020276631 0.030078236 5.09E-06 5.292888104 -0.055557478 VSGAGFSPS(ph)SK ddPTM_HeLa_A485_30min_R1 1 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VSGAGFS(0.249)PS(0.749)S(0.002)K 135.5 2.35E-05 240380000 375590 361770 270150 438770 503410 387470 605370 612470 333500 662770 TRUE FALSE FALSE 459138.6997 404075.8545 370089.7269 462738.8941 453288.7328 407757.3301 476027.7541 462260.7722 400430.391 497553.6364 0.922792371 0.812125216 0.743818756 0.930028162 0.911034911 0.819524369 0.956736559 0.929067217 0.804798441 1 18.92449253 -5.290936448 24.98679963 0.902913837 0.824833382 0.22626962 0.068343996 1031.311485 873615.9939 0.018993638 0.02817628 5.12E-06 5.290936448 -0.078080455 VSGAGFSPS(ph)SK ddPTM_HeLa_A486_30min_R1 1 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VSGAGFS(0.332)PS(0.603)S(0.065)K 101.53 0.0011803 142330000 289310 292350 171970 120940 304360 310700 397770 392430 212410 369700 TRUE FALSE FALSE 269030.863 269183.1213 238561.3895 281554.432 266184.3308 272368.993 298243.7388 303082.2557 230821.8698 277124.7137 0.970793472 0.971342894 0.860844875 1.015984566 0.960521807 0.98283906 1.076207657 1.093667366 0.832916945 1 18.08017585 -5.345857785 25 0.999985432 0.938013741 0.122773624 0.072626312 171.2028746 50697.75005 0.020496033 0.030400531 4.51E-06 5.345857785 -0.061971691 VSGEEELHTGPPAPQGPLSVPQGLPTQS(ph)LASPPAR ddPTM_HeLa_A485_30min_R1 1 VSGEEELHTGPPAPQGPLSVPQGLPTQSLASPPAR 35 0 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 VSGEEELHTGPPAPQGPLSVPQGLPT(0.012)QS(0.691)LAS(0.297)PPAR 194.75 8.00E-22 389790000 86206 111820 98348 82470 138450 111160 121700 142350 91049 122950 TRUE FALSE FALSE 105382.2273 124896.3763 134731.0178 86975.12727 124665.4319 116980.1657 95697.8008 107438.4393 109321.6991 92300.82773 1.141725702 1.353144705 1.459694578 0.942300621 1.350642621 1.267379379 1.036803279 1.164002988 1.184406487 1 16.49405597 -7.7004155 0.238315426 0.95588845 1.324735203 0.213422967 0.141654898 3.668661136 0.873783293 0.533387512 0.425409403 1.99E-08 7.7004155 0.368846754 VSGEEELHTGPPAPQGPLSVPQGLPTQSLAS(ph)PPAR ddPTM_HeLa_A485_30min_R1 1 VSGEEELHTGPPAPQGPLSVPQGLPTQSLASPPAR 35 0 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 VSGEEELHTGPPAPQGPLSVPQGLPTQSLAS(1)PPAR 286.56 3.04E-79 396220000 85722 138780 117150 133720 139300 101880 152070 144650 111050 161330 TRUE FALSE FALSE 104790.5632 155009.1138 160488.66 141024.785 125430.8029 107214.2793 119579.0022 109174.3607 133336.7164 121113.4001 0.86522683 1.279867576 1.325110681 1.164402824 1.035647607 0.885238786 0.987330899 0.901422639 1.100924558 1 16.88599897 -5.853234541 3.62592518 0.968994044 1.180378362 0.311996087 0.126882516 0.256172152 6.540456754 0.040798966 0.047738143 1.40E-06 5.853234541 0.211384318 VSGEEELHTGPPAPQGPLSVPQGLPTQSLAS(ph)PPAR ddPTM_HeLa_A486_30min_R1 2 VSGEEELHTGPPAPQGPLSVPQGLPTQSLASPPAR 35 0 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 VSGEEELHTGPPAPQGPLSVPQGLPTQS(0.002)LAS(0.998)PPAR;VSGEEELHTGPPAPQGPLSVPQGLPT(0.005)QS(0.029)LAS(0.966)PPAR ; 213.74 2.77E-30 756270000 170818 165658 146748 40839 197850 178110 197096 197894 158235 179486 TRUE FALSE FALSE 158844.5403 152530.6568 203572.7556 95075.25589 173033.8081 156136.5991 147780.4961 152837.8562 171950.9372 134541.5373 1.180635687 1.133706807 1.513084804 0.706660989 1.286099531 1.16050851 1.098400532 1.135990113 1.278050932 1 17.03769212 -11.36044051 2.1918217 1.14E-05 1.162172489 0.063201083 0.191134049 8418248.057 801688.0584 41970774.79 0.046491783 4.36E-12 11.36044051 1.162161067 VSGGLEVLAEK ddPTM_HeLa_A485_30min_R1 1 VSGGLEVLAEK 11 0 P39687;H0YN26;O43423 P39687 ANP32A;ANP32C Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C 0 0 100.72 0.010569 18885000 24490 21065 27156 40388 51111 31008 50227 40460 35604 64277 FALSE FALSE TRUE 29937.71601 23528.36851 37202.13446 42594.29417 46022.20938 32631.53093 39495.59113 30537.12156 42749.39622 48253.92683 0.620420305 0.487594898 0.770965948 0.882711459 0.953750553 0.676246123 0.818494861 0.632842207 0.885925748 1 15.55835873 -4.856306892 5.458221173 0.818237585 0.555731743 0.492817195 0.111427403 0.163439594 7.46372875 0.029057348 0.063096547 1.39E-05 4.856306892 -0.262505842 VSGLPT(ph)PDLSWQLDGKPVRPDSAHK ddPTM_HeLa_A485_30min_R1 1 VSGLPTPDLSWQLDGKPVRPDSAHK 25 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 VS(0.008)GLPT(0.992)PDLSWQLDGKPVRPDSAHK 103.21 0.00049378 166910000 151260 128780 77291 133390 208690 154020 228470 240970 134240 223920 TRUE FALSE FALSE 184907.2652 143839.7008 105884.1572 140676.7579 187912.0908 162084.249 179655.5181 181871.7297 161180.7367 168100.8649 1.099978071 0.855674959 0.629884666 0.836859215 1.117853206 0.964208299 1.068736429 1.081920249 0.958833476 1 17.35896762 -5.7458873 24.60710546 1.034475989 0.839482078 0.353859172 0.115880445 216.4806436 342522.1439 0.035541992 0.045710687 1.80E-06 5.7458873 -0.19499391 VSGLPT(ph)PDLSWQLDGKPVRPDSAHK ddPTM_HeLa_A486_30min_R1 1 VSGLPTPDLSWQLDGKPVRPDSAHK 25 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 VS(0.002)GLPT(0.998)PDLSWQLDGKPVRPDSAHK 100.68 0.00083041 215750000 158930 152990 77520 17884 159510 168440 207250 179770 119140 145020 TRUE FALSE FALSE 147789.8277 140866.5152 107537.8201 41634.85581 139502.7684 147659.5854 155393.8579 138840.2954 129467.1511 108706.0481 1.359536386 1.295848002 0.98925333 0.383004042 1.283302731 1.358338271 1.429486774 1.277208562 1.190983882 1 16.73007268 VSGLPTPDLSWQLDGKPVRPDS(ph)AHK ddPTM_HeLa_A485_30min_R1 3 VSGLPTPDLSWQLDGKPVRPDSAHK 25 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 VSGLPTPDLSWQLDGKPVRPDS(1)AHK;VSGLPTPDLSWQLDGKPVRPDS(1)AHK;VSGLPTPDLSWQLDGKPVRPDS(1)AHK ;; 230.36 5.36E-39 1427070000 1046420 772240 514980 1438810 1167960 1039850 1656390 1632420 873830 1971640 TRUE FALSE FALSE 1279192.519 862546.7504 705492.5321 1517408.547 1051673.801 1094294.938 1302488.745 1232066.435 1049199.666 1480146.433 0.864233761 0.582744201 0.476636984 1.025174613 0.710520106 0.739315323 0.879972897 0.832394963 0.708848559 1 20.49730848 -13.99999999 0.084248336 1.793071353 0.532995169 0.208433812 0.146406506 363.5360452 2.147725446 52.81599687 4.355861604 1.00E-14 13.99999999 -1.260076184 VSGLPTPDLSWQLDGKPVRPDS(ph)AHK ddPTM_HeLa_A486_30min_R1 1 VSGLPTPDLSWQLDGKPVRPDSAHK 25 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 VSGLPTPDLSWQLDGKPVRPDS(1)AHK 226.57 9.57E-39 244550000 317530 304080 158740 207870 294780 392440 505460 481040 267080 538520 TRUE FALSE FALSE 295272.7867 279983.5934 220208.3792 483931.8652 257805.9437 344024.7428 378988.5618 371517.693 290230.7094 403671.0868 0.731468754 0.69359338 0.545514371 1.198827166 0.638653478 0.852240237 0.93885486 0.920347543 0.718978195 1 18.62282073 -5.207077721 24.99986513 0.881409813 0.66053231 0.344050546 0.150051158 371.321939 170762.9879 0.039017029 0.06757943 6.21E-06 5.207077721 -0.220877503 VSGQGLHEGHT(ph)FEPAEFIIDTR ddPTM_HeLa_A486_30min_R1 2 VSGQGLHEGHTFEPAEFIIDTR 22 0 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 1 0 VS(0.45)GQGLHEGHT(0.55)FEPAEFIIDTR;VS(0.166)GQGLHEGHT(0.834)FEPAEFIIDTR ; 161.39 1.97E-13 72164000 34427 48946 34819 18969.2 46303 48828 55449 48934 40344 41811 TRUE FALSE FALSE 32013.84508 45067.3407 48301.84929 44161.25625 40495.24598 42804.09781 41575.07372 37792.79642 43841.0504 31341.25346 1.021460266 1.437955912 1.541158823 1.409045631 1.29207487 1.365743009 1.326528748 1.205848275 1.398828878 1 14.93577526 -10.33740325 0.40463793 0.80858334 1.356746591 0.345748189 0.135440903 25.80183993 2.425400174 5.369845098 0.087824033 4.60E-11 10.33740325 0.54816325 VSGRRSPES(ph)CSKPEK ddPTM_HeLa_A485_30min_R1 1 VSGRRSPESCSKPEK 15 3 Q03111 Q03111 MLLT1 Protein ENL 1 0 VS(0.009)GRRS(0.239)PES(0.6)CS(0.152)KPEK 97.384 0.0043777 290410000 46868 123200 56566 60731 318070 308280 611780 1334100 128400 155810 TRUE FALSE FALSE 57293.62491 137607.1683 77492.11731 64048.58075 286401.834 324421.0641 481068.2052 1006909.883 154168.7022 116969.4345 0.489817063 1.176436981 0.662498863 0.547566816 2.448518583 2.773554182 4.112768497 8.608316247 1.318025542 1 16.83577206 -6.214295383 1.639149069 4.298136735 0.754672054 0.292373104 1.995471408 0.401043662 2.140189921 0.824597418 0.77709851 6.11E-07 6.214295383 -3.543464681 VSGRT(ph)SPPLLDR ddPTM_HeLa_A485_30min_R1 2 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VS(0.022)GRT(0.647)S(0.331)PPLLDR;VS(0.035)GRT(0.689)S(0.276)PPLLDR ; 109.35 0.00053342 28672240000 665620 1311540 1074930 611050 1796130 1487330 2006830 3039600 1123230 1020980 TRUE FALSE FALSE 813684.8726 1464913.194 1472591.339 644430.1142 1617300.991 1565204.299 1578054.376 2294133.334 1348651.958 766468.4757 1.06160253 1.911250417 1.921267978 0.840778368 2.110068505 2.042098727 2.058864032 2.993121579 1.759566115 1 19.54786693 -5.887474876 20.18034283 2.09956773 1.499057964 0.17748732 0.556875143 3.718492748 648.5419721 0.167883721 0.190362865 1.30E-06 5.887474876 -0.600509765 VSGRT(ph)SPPLLDR ddPTM_HeLa_A486_30min_R1 2 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VS(0.112)GRT(0.585)S(0.303)PPLLDR;VS(0.051)GRT(0.474)S(0.474)PPLLDR ; 93.226 0.0021641 21111000000 914990 813404 894040 370432 1602520 817866 1179370 1320200 649134 940750 TRUE FALSE FALSE 850853.926 748946.9047 1240236.231 862384.4166 1401516.999 716966.0084 884279.1519 1019619.28 705401.4578 705180.0767 1.206576808 1.062064754 1.758751094 1.222927937 1.987459721 1.016713364 1.253976369 1.445899159 1.000313935 1 19.42763219 VSGRTS(ph)PPLLDR ddPTM_HeLa_A485_30min_R1 3 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VS(0.004)GRT(0.106)S(0.89)PPLLDR;VS(0.048)GRT(0.448)S(0.504)PPLLDR;VSGRT(0.417)S(0.582)PPLLDR ;; 116.83 0.00011106 41257300000 1545530 3199110 2716740 1503370 4351060 3532000 4781830 7020990 2427910 2365610 TRUE FALSE FALSE 1889327.816 3573218.086 3721775.179 1585495.296 3917853.189 3716930.058 3760152.957 5299081.194 2915169.267 1775906.963 1.063866439 2.012052523 2.095703917 0.892780607 2.206113986 2.092975666 2.117314158 2.983873201 1.641510129 1 20.76012457 VSGRTS(ph)PPLLDR ddPTM_HeLa_A486_30min_R1 2 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VS(0.02)GRT(0.203)S(0.776)PPLLDR;VS(0.004)GRT(0.128)S(0.868)PPLLDR ; 95.263 0.00077749 8501600000 1332180 1160090 1336000 627810 2408500 1114460 1828230 2062990 855150 1428530 TRUE FALSE FALSE 1238801.061 1068160.243 1853334.979 1461573.408 2106403.472 976969.2562 1370787.517 1593292.212 929275.0905 1070816.79 1.156874895 0.99751914 1.730767576 1.364914542 1.96709978 0.912358926 1.280132633 1.487922329 0.867818939 1 20.03028023 VSGS(ph)PEQAVEENLSSYSLDRR ddPTM_HeLa_A485_30min_R1 2 VSGSPEQAVEENLSSYSLDRR 21 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 VS(0.011)GS(0.989)PEQAVEENLSSYSLDRR;VS(0.127)GS(0.873)PEQAVEENLSSYSLDRR ; 156.8 2.50E-10 466800000 82901 89802 107422 81204 114797 94465 122299 123752 87380 105156 TRUE FALSE FALSE 101342.0414 100303.5627 147161.868 85639.9689 103367.4076 99411.04133 96168.81956 93401.62796 104916.3645 78942.54445 1.2837443 1.270589432 1.864164235 1.084839227 1.309400505 1.25928347 1.218212818 1.183159583 1.329021825 1 16.2685154 VSGS(ph)PEQAVEENLSSYSLDRR ddPTM_HeLa_A486_30min_R1 2 VSGSPEQAVEENLSSYSLDRR 21 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 VS(0.008)GS(0.992)PEQAVEENLSSYSLDRR;VS(0.013)GS(0.987)PEQAVEENLSSYSLDRR ; 143.54 1.31E-09 425810000 76675 90529 77671 28498 92946 81302 81710 82500 82374 84698 TRUE FALSE FALSE 71300.47845 83355.15234 107747.2913 66344.78421 81287.84599 71271.78586 61265.29376 63716.55096 89514.24464 63489.06951 1.123035493 1.31290556 1.697099865 1.044979628 1.280343949 1.122583563 0.96497388 1.003583002 1.409915838 1 15.95422061 VSGTLDT(ph)PEK ddPTM_HeLa_A485_30min_R1 2 VSGTLDTPEK 10 0 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 VS(0.005)GT(0.027)LDT(0.968)PEK;VSGT(0.004)LDT(0.996)PEK ; 105.25 0.0035425 181370000 534070 394190 373270 1124040 706150 450520 786680 648870 471740 1613020 TRUE FALSE FALSE 652872.029 440287.0915 511358.1061 1185443.459 635843.2266 474108.5306 618599.3914 489733.6151 566413.8909 1210923.799 0.539152034 0.363596034 0.422287601 0.978957932 0.52508938 0.391526313 0.510849148 0.404429755 0.467753538 1 20.20767665 -11.08687787 2.399966708 1.788885524 0.511990039 0.436643014 0.166455577 14358962.38 4000382.873 61966789.17 0.043684582 8.19E-12 11.08687787 -1.276895485 VSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER ddPTM_HeLa_A485_30min_R1 4 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 VS(0.002)GT(0.002)LDT(0.786)PEKT(0.208)VDS(0.002)QGPTPVCTPTFLER;VSGTLDT(1)PEKTVDSQGPTPVCTPTFLER;VS(0.001)GT(0.018)LDT(0.979)PEKT(0.002)VDSQGPTPVCTPTFLER;VSGTLDT(1)PEKTVDSQGPTPVCTPTFLER ;;; 211.15 7.39E-29 1685810000 601423 525304 391275 964580 834990 553464 984220 889000 536858 1379810 TRUE FALSE FALSE 735207.4715 586733.7333 536023.9048 1017272.563 751855.4638 582442.5192 773933.3567 670971.3561 644600.4762 1035848.761 0.709763336 0.566427992 0.517473134 0.982066689 0.725835172 0.562285289 0.747148991 0.64775031 0.622292077 1 19.98238195 -10.41817065 3.257922879 1.004117007 0.676238722 0.377487988 0.124945926 173480477.8 222547499.7 6586376.528 0.032090723 3.82E-11 10.41817065 -0.327878285 VSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER ddPTM_HeLa_A486_30min_R1 2 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 H7BZL0;Q9BYG3;C9J808 H7BZL0;C9J808 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 VS(0.002)GT(0.002)LDT(0.993)PEKT(0.003)VDSQGPTPVCTPTFLER;VSGTLDT(1)PEKTVDSQGPTPVCTPTFLER ; 277.33 5.18E-77 1545630000 459570 448400 253538 245349 461940 523860 742560 621940 377020 745450 TRUE FALSE FALSE 427356.5162 412867.151 351714.7036 571184.8713 403999.1778 459231.4794 556763.634 480337.8389 409700.3972 558784.4679 0.764796698 0.738866548 0.629428203 1.022191747 0.722996434 0.821840094 0.996383518 0.859612009 0.733199329 1 19.09193239 -5.245109828 24.99731554 0.869562569 0.713814095 0.350264353 0.104495938 998.0524699 1527818.854 0.027988712 0.048295175 5.69E-06 5.245109828 -0.155748473 VSHLLGINVTDFTR ddPTM_HeLa_A485_30min_R1 3 VSHLLGINVTDFTR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;; ;; 194.23 1.47E-17 532860000 341044 447620 420660 359620 537810 432090 519310 536120 379680 511720 FALSE FALSE TRUE 416908.0612 499965.2652 576279.6391 379265.13 484263.748 454713.5643 408355.1761 404635.7294 455878.2934 384157.6215 1.08525261 1.301458665 1.500112472 0.987264364 1.260586074 1.183664045 1.06298861 1.053306525 1.186695949 1 18.55133885 -6.271298679 0.825462455 1.071100719 1.2633464 0.213084712 0.13419633 0.983506716 1.451540028 0.089895392 0.084266458 5.35E-07 6.271298679 0.192245681 VSHLLGINVTDFTR ddPTM_HeLa_A486_30min_R1 4 VSHLLGINVTDFTR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 216.54 5.63E-22 902750000 566650 617440 547500 216204 793720 575940 652080 667650 511240 604670 FALSE FALSE TRUE 526930.7612 568511.8057 759506.6626 503333.8383 694164.2365 504886.3785 488922.687 515640.6697 555554.6948 453256.6963 1.162543798 1.254282199 1.675665619 1.110482961 1.531503544 1.113908261 1.078688282 1.137634974 1.225695504 1 18.78996881 -6.300998115 23.46506954 1.117756349 1.346881403 0.340944236 0.163730664 312.0347105 185088.3872 0.05611846 0.049493103 5.00E-07 6.300998115 0.229125054 VSHS(ph)PPPK ddPTM_HeLa_A485_30min_R1 6 VSHSPPPK 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.007)HS(0.993)PPPK;VS(0.03)HS(0.97)PPPK;VS(0.006)HS(0.994)PPPK;VS(0.027)HS(0.973)PPPK;VS(0.027)HS(0.973)PPPK;VSHS(1)PPPK ;;;;; 82.261 0.0054405 12675856000 7832832 7343337 6427897 10037950 9279644 7847244 10557100 9108070 7713041 13546990 TRUE FALSE FALSE 9575218.455 8202076.384 8805843.587 10586297.79 8355730.061 8258113.562 8301489.341 6874301.552 9260977.58 10169974.71 0.941518414 0.806499192 0.865866813 1.040936492 0.821607752 0.812009253 0.816274335 0.67594087 0.910619529 1 23.27781276 -5.925970154 25 0.820560287 0.906211145 0.105575242 0.096064158 76.51994862 25838.60891 0.029198578 0.033108078 1.19E-06 5.925970154 0.085650858 VSHS(ph)PPPK ddPTM_HeLa_A486_30min_R1 9 VSHSPPPK 8 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.005)HS(0.995)PPPK;VS(0.007)HS(0.993)PPPK;VS(0.004)HS(0.996)PPPK;VS(0.037)HS(0.963)PPPK;VSHS(1)PPPK;VS(0.03)HS(0.97)PPPK;VS(0.002)HS(0.998)PPPK;VSHS(1)PPPK;VS(0.03)HS(0.97)PPPK ;;;;;;;; 120.27 0.00076265 16070600000 9979870 9342260 6524276 4265607 9785880 11475390 11964870 11109060 8646680 12081830 TRUE FALSE FALSE 9280332.649 8601945.294 9050650.393 9930548.668 8558443.681 10059673.06 8971132.975 8579769.547 9396181.184 9056461.128 1.024719536 0.949813086 0.999358388 1.096515353 0.945009707 1.110773062 0.990578201 0.947364476 1.037511347 1 23.11051599 -5.003650451 24.98103021 1.018186754 0.984096164 0.051753052 0.05419436 451.3775587 3089000.698 0.013895083 0.028018456 9.92E-06 5.003650451 -0.03409059 VSHS(ph)PPPKQR ddPTM_HeLa_A485_30min_R1 6 VSHSPPPKQR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.001)HS(0.999)PPPKQR;VS(0.001)HS(0.999)PPPKQR;VS(0.186)HS(0.814)PPPKQR;VS(0.161)HS(0.839)PPPKQR;VS(0.014)HS(0.986)PPPKQR;VSHS(1)PPPKQR ;;;;; 146.5 2.96E-06 1699430000 360600 684087 465542 308908 717624 836224 970652 1512230 461714 462347 TRUE FALSE FALSE 440814.2259 764085.0239 637765.3586 325782.8618 646174.8348 880007.3956 763264.2707 1141353.221 554375.7647 347092.4018 1.270019809 2.20138793 1.837451224 0.938605571 1.861679574 2.535369231 2.199023277 3.288326727 1.597199368 1 18.40496026 -6.00767052 24.04186645 2.26356424 1.598844898 0.126667556 0.642872566 363.7178002 1140015.148 0.197057321 0.213980332 9.82E-07 6.00767052 -0.664719342 VSHS(ph)PPPKQR ddPTM_HeLa_A486_30min_R1 3 VSHSPPPKQR 10 1 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.013)HS(0.987)PPPKQR;VS(0.002)HS(0.998)PPPKQR;VSHS(1)PPPKQR ;; 114.24 0.00032466 432018000 215702 143823 144524 111654 277905 186612 258587 247869 143307 278091 TRUE FALSE FALSE 200582.4037 132425.9417 200487.5633 259936.1547 243047.5635 163589.7088 193885.7975 191434.6396 155728.9661 208455.2035 0.962232654 0.6352729 0.961777686 1.246964097 1.165946253 0.784771529 0.930107737 0.918349057 0.747062023 1 17.66937786 -6.299435646 24.99354595 0.874333017 0.98669998 0.114074462 0.16420933 1573.299679 1034895.477 0.064445863 0.056836903 5.02E-07 6.299435646 0.112366963 VSHVLAALQAGNR ddPTM_HeLa_A485_30min_R1 2 VSHVLAALQAGNR 13 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ; ; 140.01 0.00012902 17901000 40446 35062 33361 62140 46639 37568 50743 45590 35088 71583 FALSE FALSE TRUE 49443.07316 39162.1959 45702.62217 65534.55085 41995.4574 39535.00239 39901.34352 34408.98102 42129.83975 53738.67549 0.920064976 0.728752533 0.850460525 1.219504393 0.781475483 0.73568993 0.742507015 0.640301993 0.783976147 1 15.71367314 -5.970480478 24.99996721 0.75596636 0.921033757 0.195817325 0.143298921 317.8357103 269172.4872 0.04521873 0.051272641 1.07E-06 5.970480478 0.165067397 VSHVLAALQAGNR ddPTM_HeLa_A486_30min_R1 1 VSHVLAALQAGNR 13 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 148.68 1.98E-05 13031000 19294 20917 19569 7743.8 25922 20901 21854 23438 20074 23664 FALSE FALSE TRUE 17941.59023 19259.46074 27146.64088 18027.95775 22670.62105 18322.44713 16385.89805 18101.67905 21814.03048 17738.38037 1.011455942 1.085750803 1.530390053 1.016324905 1.278054736 1.032926724 0.9237539 1.020480938 1.229764501 1 14.11458667 -6.285441574 23.21636597 1.035313257 1.188799719 0.170035388 0.157542811 573.7220408 554935.3836 0.05588236 0.049320086 5.18E-07 6.285441574 0.153486463 VSHYIINSSGPRPPVPPS(ph)PAQPPPGVSPSR ddPTM_HeLa_A486_30min_R1 2 VSHYIINSSGPRPPVPPSPAQPPPGVSPSR 30 1 P46108-2;I3L297;P46108 P46108-2 CRK Adapter molecule crk 1 0 VSHYIINSSGPRPPVPPS(0.995)PAQPPPGVS(0.002)PS(0.002)R;VSHYIINSSGPRPPVPPS(0.999)PAQPPPGVS(0.001)PSR ; 176.01 3.51E-15 1535970000 582570 649080 560800 166779 769480 631400 682170 681720 574310 629070 TRUE FALSE FALSE 541734.8514 597644.5369 777956.7787 388269.9405 672964.6433 553504.2876 511483.8507 526507.2378 624091.6532 471546.7774 1.148846471 1.267413045 1.649797679 0.823396446 1.427142917 1.173805684 1.084693768 1.11655357 1.323498925 1 18.84704137 -5.256871209 24.99857612 1.152061249 1.346558425 0.207259267 0.194880501 691.2722511 3782863.69 0.051963583 0.086240891 5.54E-06 5.256871209 0.194497176 VSHYIINSSGPRPPVPPSPAQPPPGVS(ph)PSR ddPTM_HeLa_A485_30min_R1 3 VSHYIINSSGPRPPVPPSPAQPPPGVSPSR 30 1 P46108-2;I3L297;P46108 P46108-2 CRK Adapter molecule crk 1 0 VSHYIINSSGPRPPVPPS(0.011)PAQPPPGVS(0.781)PS(0.208)R;VSHYIINSSGPRPPVPPS(0.018)PAQPPPGVS(0.768)PS(0.214)R;VSHYIINSSGPRPPVPPS(0.001)PAQPPPGVS(0.947)PS(0.052)R ;; 180.14 7.87E-21 1625740000 474324 636620 555344 493849 745432 598041 656634 644243 537239 646895 TRUE FALSE FALSE 579835.7374 711067.1711 760788.8554 520826.7204 671214.1727 629353.502 516338.7817 486241.3941 645057.9395 485635.9817 1.193971944 1.464197872 1.566582552 1.072463203 1.382134352 1.295936722 1.063221839 1.001246638 1.3282746 1 18.88951579 -6.681641682 4.96934957 1.098548314 1.34047333 0.353644845 0.153382618 0.237417783 10.37798256 0.060725429 0.04591397 2.08E-07 6.681641682 0.241925016 VSHYIINSSGPRPPVPPSPAQPPPGVS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 VSHYIINSSGPRPPVPPSPAQPPPGVSPSR 30 1 P46108-2;I3L297;P46108 P46108-2 CRK Adapter molecule crk 1 0 VSHYIINSSGPRPPVPPS(0.002)PAQPPPGVS(0.743)PS(0.255)R 93.384 0.00036361 707150000 188430 203580 161610 33995 209650 176930 208580 162630 180520 206860 TRUE FALSE FALSE 175222.0301 187447.5794 224189.7201 79142.07801 183353.7421 155102.1755 156391.0779 125602.6992 196167.6189 155060.9096 1.130020652 1.208864181 1.445817135 0.510393485 1.182462702 1.000266127 1.00857836 0.810021685 1.265100401 1 17.24247551 -5.195021186 24.99999542 0.972148601 1.256296744 0.297492773 0.206534268 241.0371683 90726.19323 0.053365507 0.092431763 6.38E-06 5.195021186 0.284148142 VSIGNITLS(ph)PAISR ddPTM_HeLa_A485_30min_R1 4 VSIGNITLSPAISR 14 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 VSIGNITLS(1)PAISR;VSIGNITLS(0.999)PAIS(0.001)R;VSIGNITLS(1)PAISR;VSIGNIT(0.003)LS(0.996)PAIS(0.001)R ;;; 232.62 1.04E-28 2541756000 708924 684171 735392 757989 739685 624003 806227 585913 627119 978650 TRUE FALSE FALSE 866621.698 764178.847 1007444.103 799396.0197 666039.3642 656674.8322 633970.0152 442216.9181 752976.031 734690.5657 1.17957374 1.040137008 1.371249544 1.088071709 0.906557666 0.89381144 0.862907522 0.601909074 1.024888662 1 19.48677722 -5.72000585 3.004965207 0.855784223 1.187536935 0.542205635 0.131415226 0.184595199 3.407045357 0.041034982 0.052528213 1.91E-06 5.72000585 0.331752712 VSIGNITLS(ph)PAISR ddPTM_HeLa_A486_30min_R1 4 VSIGNITLSPAISR 14 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 VSIGNITLS(1)PAISR;VSIGNITLS(1)PAISR;VSIGNITLS(1)PAISR;VSIGNITLS(1)PAISR ;;; 291.68 7.46E-58 3203107000 1018812 1326560 1008404 418102 1210264 1032364 1218352 1033134 1219771 1223121 TRUE FALSE FALSE 947398.54 1221438.554 1398885.035 973362.5857 1058461.404 905001.426 913507.4432 797911.9414 1325501.732 916843.5404 1.033326296 1.332221367 1.525762001 1.061645246 1.154462411 0.987083822 0.996361323 0.870281467 1.445722933 1 19.80631603 -5.323620784 24.44336765 1.064785604 1.300615325 0.240628075 0.18139651 232.5855252 91428.11441 0.050493177 0.07489351 4.75E-06 5.323620784 0.235829721 VSIGNITLSPAISRHS(ph)PVQMNR ddPTM_HeLa_A485_30min_R1 1 VSIGNITLSPAISRHSPVQMNR 22 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 VSIGNIT(0.008)LS(0.055)PAIS(0.399)RHS(0.537)PVQMNR 46.356 0.024496 344920000 38468 59566 77000 24624 73500 47188 67555 69121 47238 32828 TRUE FALSE FALSE 47025.07389 66531.72554 105485.5042 25969.14677 66182.08193 49658.69071 53121.32238 52168.96637 56718.23331 24644.58375 1.908130174 2.699648986 4.280271288 1.053746617 2.685461543 2.014994094 2.155496839 2.116853216 2.301448216 1 14.58898299 -9.871415132 0.192412888 2.87E-16 2.839977644 0.23729059 0.766379898 27.36291827 1.23233518 18.12125876 2.654777664 1.34E-10 9.871415132 2.839977644 VSIS(ph)FENYR ddPTM_HeLa_A485_30min_R1 1 VSISFENYR 9 0 B4E1Q4;O14730-2;O14730 B4E1Q4 RIOK3 Serine/threonine-protein kinase RIO3 1 0 VS(0.003)IS(0.997)FENYR 81.625 0.0047897 0 30675 50648 53376 27606 55203 39605 45274 42825 40413 29315 TRUE FALSE FALSE 37498.54792 56570.84302 73122.00356 29114.04588 49706.79549 41678.65656 35600.84005 32322.1016 48523.51841 22007.31 1.703913287 2.570547832 3.322623417 1.322926149 2.258649307 1.893855112 1.61768249 1.468698428 2.204881851 1 14.42569519 -5.936161451 0.960884803 1.611273612 2.436456103 0.248018656 0.557223584 0.808380377 1.620490622 0.284641706 0.36705147 1.16E-06 5.936161451 0.825182491 VSKPSQLQAHTPASQQT(ph)PPLPPYASPR ddPTM_HeLa_A485_30min_R1 1 VSKPSQLQAHTPASQQTPPLPPYASPR 27 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 VSKPSQLQAHTPASQQT(0.359)PPLPPY(0.304)AS(0.337)PR 94.73 0.0028978 898460000 350920 417200 362780 261270 383160 317120 386670 406460 325020 379810 TRUE FALSE FALSE 428980.9433 465987.9108 496987.4185 275542.5185 345011.245 333723.9128 304054.7957 306775.0477 390248.5327 285130.3569 1.504508142 1.634297786 1.74301826 0.966373842 1.210012321 1.170425754 1.066371182 1.075911562 1.368667079 1 18.12126212 -5.258115931 24.99996462 1.129000248 1.627977053 0.787751804 0.120028131 124.5402576 936824.7476 0.032193887 0.052940375 5.52E-06 5.258115931 0.498976805 VSKPSQLQAHTPASQQTPPLPPYAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VSKPSQLQAHTPASQQTPPLPPYASPR 27 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 VSKPSQLQAHTPASQQT(0.005)PPLPPY(0.471)AS(0.524)PR 137.71 1.24E-06 906670000 509110 645360 531710 406270 534210 556670 599830 611120 496080 618120 TRUE FALSE FALSE 622359.7631 720829.2381 728411.6553 428463.5014 481022.1767 585816.3804 471671.4203 461241.8618 595638.7057 464034.0597 1.341194143 1.553397263 1.56973748 0.923344941 1.036609634 1.262442634 1.016458621 0.993982774 1.283609884 1 18.82387118 -5.254779172 24.99999832 1.077451628 1.494638415 0.704027796 0.123070491 285.3838571 1071224.595 0.033545487 0.056433283 5.56E-06 5.254779172 0.417186786 VSKPSQLQAHTPASQQTPPLPPYAS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VSKPSQLQAHTPASQQTPPLPPYASPR 27 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 VSKPSQLQAHTPASQQT(0.003)PPLPPY(0.002)AS(0.994)PR 171.48 3.01E-14 635060000 799600 796380 535160 114020 690070 625260 734770 671430 665890 727650 TRUE FALSE FALSE 743552.1691 733271.9484 742388.2841 265444.3223 603514.986 548121.7784 550922.7744 518560.0462 723609.8813 545441.7038 1.363211071 1.344363556 1.361077231 0.486659382 1.106470191 1.004913586 1.010048866 0.950715801 1.326649349 1 19.05706549 VSKPVS(ph)PSLDPLAMLYK ddPTM_HeLa_A486_30min_R1 2 VSKPVSPSLDPLAMLYK 17 1 Q6ZSZ6-2;Q6ZSZ6 Q6ZSZ6-2 TSHZ1 Teashirt homolog 1 1 0 VS(0.004)KPVS(0.956)PS(0.04)LDPLAMLYK;VS(0.006)KPVS(0.993)PS(0.001)LDPLAMLYK ; 197.72 2.86E-25 77322000 232860 226070 103193 98984 212833 263890 292120 286450 180218 320110 TRUE FALSE FALSE 216537.7165 208155.3899 143152.0932 230439.7544 186137.5006 231333.9348 219028.4863 221231.5882 195839.4413 239952.3724 0.902419569 0.867486276 0.596585446 0.960356224 0.775726861 0.964082716 0.912799836 0.92198125 0.816159638 1 17.87238855 -6.260082239 24.99593342 0.917490713 0.818452837 0.207011407 0.099965328 213.2366731 3927435.931 0.033520111 0.031774404 5.49E-07 6.260082239 -0.099037876 VSLDVNHFAPDELTVK ddPTM_HeLa_A485_30min_R1 3 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ;; ;; 186.68 9.45E-14 608040000 811000 827540 693610 906220 1096720 1083230 1463610 1617920 811530 1424620 FALSE FALSE TRUE 991404.1521 924313.6044 950205.2025 955724.5039 987526.706 1139946.248 1150897.767 1221122.583 974396.6272 1069488.452 0.926989113 0.864257676 0.888467005 0.893627698 0.923363599 1.065879903 1.076119863 1.141781925 0.911086628 1 20.02848947 -6.170952828 3.989106998 1.050308782 0.892748265 0.59237539 0.057819405 0.152371041 4.436883034 0.019301012 0.019178854 6.75E-07 6.170952828 -0.157560518 VSLDVNHFAPDELTVK ddPTM_HeLa_A486_30min_R1 3 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ;; ;; 221.85 6.49E-25 362954000 839130 892710 594150 287344 1077910 990070 1150130 1073490 900060 1114700 FALSE FALSE TRUE 780311.3203 821968.4084 824220.7919 668951.3536 942708.4767 867925.2297 862355.3092 829079.7611 978077.9255 835571.8645 0.933865001 0.983719586 0.986415205 0.800591047 1.128219507 1.038720027 1.032054029 0.992230347 1.170549138 1 19.67240439 -5.781187679 24.99995584 1.057416165 0.934564729 0.464510378 0.070288657 233.7976959 295970.0175 0.021447528 0.024351361 1.66E-06 5.781187679 -0.122851436 VSLEPHQGPGT(ph)PESK ddPTM_HeLa_A485_30min_R1 9 VSLEPHQGPGTPESK 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VSLEPHQGPGT(0.987)PES(0.013)K;VSLEPHQGPGT(0.999)PES(0.001)K;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(0.994)PES(0.006)K;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(0.999)PES(0.001)K;VSLEPHQGPGT(0.985)PES(0.015)K;VSLEPHQGPGT(0.992)PES(0.008)K ;;;;;;;; 188 2.63E-17 20058560000 1776399 1742865 1494050 1834253 2573776 1717896 2647351 2533003 1771672 2812064 TRUE FALSE FALSE 2171552.829 1946677.901 2046761.268 1934453.597 2317521.824 1807842.378 2081722.832 1911780.043 2127230.32 2111068.197 1.028651198 0.922129329 0.969538204 0.916338752 1.097795811 0.856363798 0.986099281 0.905598429 1.007655898 1 21.00954175 VSLEPHQGPGT(ph)PESK ddPTM_HeLa_A486_30min_R1 6 VSLEPHQGPGTPESK 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(1)PESK;VSLEPHQGPGT(0.996)PES(0.004)K;VSLEPHQGPGT(1)PESK ;;;;; 202.61 2.98E-25 24513865000 3369247 3442487 2099108 355489.7 3384316 3101171 4124119 3765661 2862596 2684044 TRUE FALSE FALSE 3133080.184 3169691.793 2911938.834 827597.9871 2959823.53 2718580.052 3092220.806 2908302.194 3110728.126 2011941.912 1.557241869 1.575439019 1.447327488 0.411342883 1.471127726 1.351221939 1.536933441 1.445519961 1.546132176 1 20.94015722 VSLEPHQGPGT(ph)PESKK ddPTM_HeLa_A485_30min_R1 4 VSLEPHQGPGTPESKK 16 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VSLEPHQGPGT(0.994)PES(0.006)KK;VSLEPHQGPGT(0.983)PES(0.017)KK;VSLEPHQGPGT(0.975)PES(0.025)KK;VSLEPHQGPGT(0.98)PES(0.02)KK ;;; 120.56 4.90E-05 1931900000 1922300 2212010 1754180 1899360 2934100 2479620 3311190 3535080 2078150 3048760 TRUE FALSE FALSE 2349909.003 2470685.328 2403124.18 2003117.227 2641970.702 2609449.069 2603727.207 2668096.087 2495215.643 2288760.24 1.026716981 1.079486302 1.049967636 0.875197494 1.154323924 1.140114645 1.137614662 1.165738569 1.090204032 1 21.12613491 VSLEPHQGPGT(ph)PESKK ddPTM_HeLa_A486_30min_R1 4 VSLEPHQGPGTPESKK 16 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VSLEPHQGPGT(0.95)PES(0.05)KK;VSLEPHQGPGT(0.986)PES(0.014)KK;VSLEPHQGPGT(0.811)PES(0.189)KK;VSLEPHQGPGT(0.984)PES(0.016)KK ;;; 118.23 7.55E-05 1329290000 1747835 1588049 781400 232165.3 1675181 1599390 2212374 2079590 1275906 1696634 TRUE FALSE FALSE 1625320.792 1462206.214 1083979.007 540492.5514 1465064.179 1402073.523 1658814.625 1606112.754 1386502.559 1271785.803 1.277983123 1.149726794 0.85232828 0.424987093 1.151974 1.102444704 1.304319187 1.262879921 1.090201318 1 20.27842428 -5.95759417 24.99998784 1.172288362 0.918380779 0.194255756 0.223063613 233.3853039 137589.2757 0.074654591 0.084650298 1.10E-06 5.95759417 -0.253907582 VSLKGNRES(ph)DGFR ddPTM_HeLa_A485_30min_R1 1 VSLKGNRESDGFR 13 2 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 VS(0.002)LKGNRES(0.998)DGFR 56.817 0.01696 48203000 92592 96671 74480 115490 98448 86879 105470 110220 77364 143590 TRUE FALSE FALSE 113188.771 107975.8325 102033.2514 121798.9263 88646.17145 91427.8501 82935.47289 83188.37218 92890.24518 107795.6556 1.050030916 1.001671468 0.946543261 1.129905705 0.822353841 0.84815895 0.769376766 0.771722865 0.861725314 1 16.71793951 -5.780900227 24.94535296 0.830463529 1.02376205 0.595019697 0.074624498 150.4857267 192895.0802 0.022284718 0.025304384 1.66E-06 5.780900227 0.193298521 VSLKGNRES(ph)DGFREEK ddPTM_HeLa_A486_30min_R1 1 VSLKGNRESDGFREEK 16 3 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 VS(0.21)LKGNRES(0.79)DGFREEK 86.727 0.007159 223440000 385930 334200 163040 252090 434920 406620 577160 630000 222770 644640 TRUE FALSE FALSE 358878.2999 307716.7749 226173.4544 586878.2599 380368.2781 356455.3586 432748.4634 486562.7528 242079.883 483217.9481 0.742684127 0.63680742 0.468056816 1.214520823 0.787156768 0.737669948 0.895555443 1.006921938 0.500974527 1 18.88231452 -5.225170432 24.99233972 0.868987833 0.617945285 0.288114484 0.188161019 784.1310992 540331.0153 0.049700875 0.086080635 5.95E-06 5.225170432 -0.251042548 VSLLGPVT(ph)TPEHQLLK ddPTM_HeLa_A486_30min_R1 2 VSLLGPVTTPEHQLLK 16 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 VSLLGPVT(0.584)T(0.416)PEHQLLK;VSLLGPVT(0.64)T(0.36)PEHQLLK ; 128.74 2.29E-05 1862890000 797420 1163650 2007460 183027 1958950 717200 686210 924140 1129910 432301 TRUE FALSE FALSE 741524.9759 1071438.136 2784802.274 426096.1057 1713240.225 628719.156 514513 713733.4958 1227851.509 324050.0158 2.288304088 3.30639742 8.593742132 1.314908455 5.286962324 1.940191715 1.587757985 2.202541154 3.789080231 1 18.30585698 -6.27807229 23.96933741 2.146813015 4.199221738 0.218648569 1.939937062 784.032144 1129847.795 0.676357784 0.598364874 5.27E-07 6.27807229 2.052408723 VSLLGPVT(ph)TPEHQLLKT(ph)PSSSSLSQR ddPTM_HeLa_A486_30min_R1 1 VSLLGPVTTPEHQLLKTPSSSSLSQR 26 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 2 0 VSLLGPVT(0.553)T(0.447)PEHQLLKT(0.977)PS(0.004)S(0.004)S(0.004)S(0.005)LS(0.005)QR 99.372 0.0021137 93587000 64422 62167 43296 18898 68270 64685 90888 74777 61536 73912 TRUE FALSE FALSE 59906.35048 57240.66051 60061.37071 43995.49905 59706.94001 56704.82237 68146.86108 57751.90947 66869.99003 55403.95411 1.081264892 1.033151179 1.084062892 0.794085905 1.077665682 1.023479701 1.229999955 1.042378841 1.206953386 1 15.75770132 -6.560633162 24.12487279 1.123847004 1.01115681 0.20268905 0.101196671 176.2203821 112602.0268 0.037695138 0.029198626 2.75E-07 6.560633162 -0.112690194 VSLLGPVTT(ph)PEHQLLK ddPTM_HeLa_A485_30min_R1 1 VSLLGPVTTPEHQLLK 16 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 VSLLGPVT(0.403)T(0.596)PEHQLLK 107.09 0.00030253 1644500000 194600 594970 801520 82227 577020 423680 320120 414210 439040 140620 TRUE FALSE FALSE 237888.0986 664546.5659 1098035.602 86718.8528 519569.8628 445863.2297 251723.7469 312624.348 527151.3009 105566.0219 2.253453283 6.29508012 10.40141119 0.821465574 4.921752789 4.223548653 2.384514849 2.961410711 4.993569818 1 16.68778603 -5.282666758 24.99958868 3.225417453 6.314492688 0.300994305 2.27384705 1019.229026 1200348.698 0.638514157 0.948090833 5.22E-06 5.282666758 3.089075235 VSLLGPVTT(ph)PEHQLLK ddPTM_HeLa_A486_30min_R1 1 VSLLGPVTTPEHQLLK 16 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 VSLLGPVT(0.107)T(0.893)PEHQLLK 126.88 2.62E-05 18011000 36189 47323 29773 14895 42170 37867 45611 48976 33122 43534 TRUE FALSE FALSE 33652.33798 43572.95313 41301.90295 34676.31275 36880.64538 33195.35454 34198.64538 37825.23394 35993.04163 32632.80304 1.031242641 1.335250088 1.265655999 1.062621336 1.130170931 1.017238835 1.047983691 1.159116913 1.102971191 1 14.99403529 -5.267657187 24.93186244 1.079784124 1.223169629 0.347355672 0.084944985 493.6182122 1979287.876 0.023379494 0.035714204 5.40E-06 5.267657187 0.143385505 VSLLGPVTT(ph)PEHQLLKT(ph)PS(ph)SSSLSQR ddPTM_HeLa_A486_30min_R1 2 VSLLGPVTTPEHQLLKTPSSSSLSQR 26 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 3 0 VS(0.002)LLGPVT(0.32)T(0.678)PEHQLLKT(0.997)PS(0.278)S(0.251)S(0.227)S(0.205)LS(0.042)QR;VS(0.001)LLGPVT(0.378)T(0.621)PEHQLLKT(0.99)PS(0.387)S(0.351)S(0.217)S(0.044)LS(0.01)QR ; 72.842 0.0054084 134185000 98088 94130 59063 46198 101757 103751 131012 109032 72472 117365 TRUE FALSE FALSE 91212.53773 86670.79598 81933.77536 107551.2787 88993.68821 90951.25648 98231.4119 84207.79375 78753.93131 87976.04008 1.036788399 0.985163641 0.931319201 1.222506476 1.011567333 1.033818485 1.116570055 0.957167357 0.895174768 1 16.42482304 -7.420238016 7.461299473 0.940645292 1.045886714 0.248670704 0.077468098 0.367975451 23.32979968 0.043264132 0.020547788 3.80E-08 7.420238016 0.105241422 VSMPDVELNLKS(ph)PK ddPTM_HeLa_A485_30min_R1 2 VSMPDVELNLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK ; 207.56 2.17E-22 8749700000 2443190 1572080 863840 4190340 2636480 2013880 3521460 3251310 1435730 5775700 TRUE FALSE FALSE 2986669.187 1755921.081 1183410.363 4419247.664 2373982.794 2119323.643 2769071.303 2453921.125 1723867.842 4335924.284 0.688819498 0.404970421 0.27293151 1.019216982 0.547514818 0.488782438 0.638634608 0.565951102 0.397577939 1 22.04790813 -10.46524816 3.490132867 1.005990253 0.559152936 0.320843811 0.192801655 88618249.31 106202044.8 5031283.405 0.049813474 3.43E-11 10.46524816 -0.446837317 VSMPDVELNLKS(ph)PK ddPTM_HeLa_A486_30min_R1 5 VSMPDVELNLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK ;;;; 193.41 2.68E-18 10172230000 4197700 3602940 1470710 3833510 3457230 5014680 7596900 5921940 2675860 8204970 TRUE FALSE FALSE 3903462.907 3317429.913 2040208.299 8924605.015 3023591.976 4396019.767 5696075.268 4573643.537 2907805.699 6150392.107 0.634668951 0.539385108 0.331720037 1.451062771 0.491609628 0.714754391 0.926132053 0.743634464 0.472783791 1 22.55224696 VSNGS(ph)PSLER ddPTM_HeLa_A485_30min_R1 4 VSNGSPSLER 10 0 E7ES52;P46527 E7ES52 CDKN1B Cyclin-dependent kinase inhibitor 1B 1 0 VSNGS(0.994)PS(0.005)LER;VS(0.001)NGS(0.793)PS(0.206)LER;VS(0.004)NGS(0.987)PS(0.009)LER;VS(0.018)NGS(0.969)PS(0.013)LER ;;; 141.88 6.48E-06 1873770000 529420 858860 830990 521192 890040 747860 771180 882240 729960 763220 TRUE FALSE FALSE 647187.6525 959296.2059 1138407.781 549663.3992 801424.4925 787016.7932 606411.093 665869.2567 876456.2764 572963.3 1.129544689 1.674271643 1.986877312 0.959334392 1.398736171 1.373590234 1.058376851 1.162149926 1.52969008 1 19.12808321 -5.272352126 24.99790949 1.2266036 1.604635279 0.314624463 0.259808018 858.5368103 1966654.782 0.072890726 0.109308736 5.34E-06 5.272352126 0.378031678 VSNGS(ph)PSLER ddPTM_HeLa_A486_30min_R1 2 VSNGSPSLER 10 0 E7ES52;P46527 E7ES52 CDKN1B Cyclin-dependent kinase inhibitor 1B 1 0 VS(0.004)NGS(0.989)PS(0.007)LER;VS(0.029)NGS(0.97)PS(0.001)LER ; 115.35 0.00049283 1195290000 616320 674150 422060 245375 621010 616430 767810 704040 487880 704870 TRUE FALSE FALSE 573119.1507 620727.8988 585492.9352 571245.4006 543117.1351 540381.134 575695.8169 543745.4611 530169.8312 528365.9641 1.084701116 1.174806746 1.108120081 1.081154804 1.027918473 1.022740242 1.089577785 1.02910766 1.003414049 1 19.01117801 -5.450488452 2.134178967 1.032793545 1.130185475 0.645415194 0.031258539 0.200301014 1.803233053 0.009802085 0.016002642 3.54E-06 5.450488452 0.09739193 VSNLQVS(ph)PK ddPTM_HeLa_A485_30min_R1 4 VSNLQVSPK 9 0 A0A0C4DGF9;O00443-2;O00443 A0A0C4DGF9 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 0 VSNLQVS(1)PK;VSNLQVS(1)PK;VSNLQVS(1)PK;VSNLQVS(1)PK ;;; 126.5 0.00028404 689510000 1449550 1317780 1012880 2263420 1747120 1408690 2270870 2068820 1203970 3147890 TRUE FALSE FALSE 1771997.397 1471882.908 1387586.461 2387064.903 1573170.598 1482446.83 1785680.073 1561438.651 1445595.736 2363178.956 0.749836314 0.622840223 0.587169439 1.010107549 0.665701002 0.62731044 0.755626259 0.660736525 0.611716574 1 21.17229745 -10.07791378 4.393384991 1.000025894 0.700077189 0.374403448 0.116715985 29845509.64 17115532.4 7081.56155 0.028445669 8.36E-11 10.07791378 -0.299948705 VSNLQVS(ph)PK ddPTM_HeLa_A486_30min_R1 1 VSNLQVSPK 9 0 A0A0C4DGF9;O00443-2;O00443 A0A0C4DGF9 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 0 VSNLQVS(1)PK 176.87 1.23E-06 317660000 819040 721140 380760 504510 698450 830930 1134100 1042300 604930 1444200 TRUE FALSE FALSE 761629.5255 663994.2401 528200.4691 1174524.777 610843.8882 728418.3049 850336.1847 804991.0432 657365.8195 1082562.92 0.703542964 0.613353947 0.487916646 1.084948279 0.564257169 0.672864636 0.785484307 0.743597465 0.607231051 1 20.04601945 -11.35106031 2.238022746 2.842331396 0.698294468 0.259317854 0.154130497 10401588.11 1075040.042 97216598.43 0.037494126 4.46E-12 11.35106031 -2.144036929 VSNS(ph)LINFGR ddPTM_HeLa_A485_30min_R1 1 VSNSLINFGR 10 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 VS(0.01)NS(0.99)LINFGR 65.495 0.01936 41567000 47272 50660 45663 37784 64128 40402 49539 49064 36596 43970 TRUE FALSE FALSE 57787.49331 56584.24632 62555.6439 39848.04425 57743.19115 42517.38625 38954.58795 37030.97707 43940.48152 33009.08821 1.75065403 1.714202039 1.895103661 1.207184034 1.74931191 1.288050914 1.180117055 1.121841865 1.33116314 1 15.01057567 -5.965417086 0.480375152 1.06556109 1.87420491 0.652504646 0.179125651 0.768228049 0.358490574 0.155557698 0.284732183 1.08E-06 5.965417086 0.80864382 VSNS(ph)LINFGR ddPTM_HeLa_A486_30min_R1 1 VSNSLINFGR 10 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 VS(0.001)NS(0.999)LINFGR 111.31 0.0006862 44622000 45569 43222 45917 19127 58390 48858 50958 49762 35737 46768 TRUE FALSE FALSE 42374.84842 39796.93131 63697.2921 44528.62263 51066.18173 42830.39671 38207.76942 38432.2789 38834.71193 35056.98839 1.208741833 1.135206791 1.816964178 1.270178206 1.456661969 1.221736341 1.089875976 1.096280104 1.1077595 1 15.09741444 -6.538225971 2.986325688 1.080837558 1.382328305 0.399383428 0.175243403 0.28656152 5.23948998 0.072884806 0.057186493 2.90E-07 6.538225971 0.301490747 VSNS(ph)PEPQK ddPTM_HeLa_A485_30min_R1 3 VSNSPEPQK 9 0 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VSNS(1)PEPQK;VSNS(1)PEPQK;VS(0.001)NS(0.999)PEPQK ;; 152.67 5.68E-05 828750000 1918920 1557230 1396680 2542470 2130740 1603470 2253780 1948920 1607160 3224110 TRUE FALSE FALSE 2345777.134 1739334.502 1913370.053 2681358.698 1918596.044 1687425.21 1772241.491 1470944.314 1929702.27 2420398.712 0.969169716 0.718614869 0.790518539 1.107816941 0.792677683 0.697168281 0.732210558 0.607728101 0.797266277 1 21.20681329 -5.989920072 24.99664799 0.740716876 0.885499258 0.157805056 0.135417155 346.0179288 858064.4559 0.041585222 0.047102109 1.02E-06 5.989920072 0.144782382 VSNS(ph)PEPQK ddPTM_HeLa_A486_30min_R1 4 VSNSPEPQK 9 0 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VSNS(1)PEPQK;VSNS(1)PEPQK;VS(0.003)NS(0.997)PEPQK;VSNS(1)PEPQK ;;; 194.43 6.51E-09 1362720000 3354630 3546880 2047610 1423550 3102150 3960450 4330640 3951000 2848990 4175850 TRUE FALSE FALSE 3119487.76 3265812.311 2840499.429 3314096.342 2713049.421 3471849.946 3247068.067 3051443.55 3095942.747 3130189.98 0.996580968 1.043327189 0.907452726 1.05875246 0.866736344 1.109149914 1.037338976 0.974842923 0.989059056 1 21.57781879 -6.285060076 24.99726206 1.021459634 0.979337818 0.12094775 0.063380114 2017.112756 2134658.631 0.021801042 0.01923744 5.19E-07 6.285060076 -0.042121815 VSNS(ph)PEPQKAVEQEDELSDVSQGGSK ddPTM_HeLa_A485_30min_R1 1 VSNSPEPQKAVEQEDELSDVSQGGSK 26 1 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VS(0.046)NS(0.954)PEPQKAVEQEDELSDVSQGGSK 211.87 3.54E-29 167450000 61171 56061 34227 68209 103870 98441 150440 173760 73834 134850 TRUE FALSE FALSE 74778.27791 62616.84628 46888.9916 71935.08496 93528.33809 103595.2185 118297.265 131145.0876 88651.80655 101234.3767 0.738664872 0.61853343 0.463172621 0.71057962 0.923879231 1.023320555 1.168548361 1.295460019 0.875708523 1 16.62733975 -5.888076223 1.912622045 1.100119354 0.60403651 0.746620026 0.121593332 0.159504545 1.195223233 0.044292274 0.052760195 1.29E-06 5.888076223 -0.496082844 VSNS(ph)PPLGR ddPTM_HeLa_A485_30min_R1 2 VSNSPPLGR 9 0 H0Y9Y2 H0Y9Y2 BOD1L1 1 0 VS(0.027)NS(0.973)PPLGR;VSNS(1)PPLGR ; 139.29 0.00014587 625710000 244662 277070 244117 195680 382330 300680 344430 409110 278920 271460 TRUE FALSE FALSE 299086.2178 309470.9263 334426.0369 206369.5029 344263.8828 316423.1399 270839.7168 308775.131 334896.6856 203790.0179 1.467619567 1.518577453 1.641032472 1.012657563 1.689306897 1.552692046 1.329013656 1.515163178 1.643341951 1 17.63672386 -10.21492283 4.683581652 0.999898724 1.481372283 0.380127572 0.185922212 0.000191589 3.21E-05 0.17541589 0.042535706 6.10E-11 10.21492283 0.481473559 VSNS(ph)PPLGR ddPTM_HeLa_A486_30min_R1 2 VSNSPPLGR 9 0 H0Y9Y2 H0Y9Y2 BOD1L1 1 0 VS(0.028)NS(0.972)PPLGR;VS(0.018)NS(0.982)PPLGR ; 116.03 0.00065293 557690000 1265460 1289320 677330 92405 1227930 1031610 1002250 1106400 991550 450180 TRUE FALSE FALSE 1176757.789 1187149.588 939610.3155 215123.5099 1073911.569 904340.4468 751476.4493 854496.8725 1077498.352 337451.9978 3.487185723 3.517980617 2.78442659 0.637493662 3.182412836 2.67990841 2.226913618 2.532202737 3.193041853 1 18.36432277 -10.91365438 2.533522128 2.56E-28 2.655471668 0.289898564 0.793135412 10436071.95 4443126.215 61752202.67 0.211332507 1.22E-11 10.91365438 2.655471668 VSPAHS(ph)PPENGLDK ddPTM_HeLa_A485_30min_R1 2 VSPAHSPPENGLDK 14 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 VS(0.016)PAHS(0.984)PPENGLDK;VS(0.002)PAHS(0.998)PPENGLDK ; 115.34 0.00013001 225240000 342100 418130 359230 280560 578820 390840 525550 545620 383760 487370 TRUE FALSE FALSE 418198.9648 467026.6663 492124.1258 295886.2824 521190.6484 411303.778 413261.9492 411805.8395 460777.1119 365877.6284 1.143002284 1.276455924 1.345051153 0.808702854 1.424494443 1.124156675 1.129508658 1.125528886 1.259374928 1 18.48100168 -13.53124727 0.287923119 4.56E-18 1.191380072 0.101659395 0.158657658 437.8820561 5.369986285 261.0494936 0.167911516 2.94E-14 13.53124727 1.191380072 VSPAHS(ph)PPENGLDK ddPTM_HeLa_A486_30min_R1 2 VSPAHSPPENGLDK 14 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 VSPAHS(1)PPENGLDK;VS(0.002)PAHS(0.998)PPENGLDK ; 151.95 3.45E-08 464720000 731170 620420 398390 81734 660700 528440 631180 642070 561870 454680 TRUE FALSE FALSE 679918.7588 571255.6597 552657.2773 190280.8826 577828.8452 463246.4456 473252.0881 495884.6773 610573.344 340825.1685 1.994919453 1.676095877 1.621527188 0.558294692 1.695381969 1.359190836 1.388547947 1.454953223 1.791456149 1 18.37867235 -4.704056407 2.51220786 1.350954873 1.92249773 0.274836214 0.336751392 0.399541633 4.859037337 0.090500955 0.3256767 1.98E-05 4.704056407 0.571542858 VSPAS(ph)PAGS(ph)PSADFAVHGESLGDR ddPTM_HeLa_A485_30min_R1 3 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-3;Q96C92;Q96C92-2;Q96C92-4 A0A0A0MRP9;Q96C92-4 SDCCAG3 Serologically defined colon cancer antigen 3 2 0 VS(0.004)PAS(0.996)PAGS(0.993)PS(0.008)ADFAVHGESLGDR;VS(0.001)PAS(0.999)PAGS(1)PSADFAVHGESLGDR;VS(0.108)PAS(0.855)PAGS(0.739)PS(0.299)ADFAVHGESLGDR ;; 219.73 4.89E-38 1011530000 363678 441605 382065 328074 500417 407844 500668 521949 364329 463259 TRUE FALSE FALSE 444576.9164 493246.8633 523406.7426 345995.8519 450593.7264 429198.0812 393696.1917 393940.1894 437446.4885 347777.057 1.278338831 1.418284655 1.505006532 0.994878314 1.295639598 1.234118446 1.132036124 1.132737717 1.257835961 1 18.40780323 -1.000000024 0.101672525 0.90004174 2.345667398 0.369184432 0.124443442 133.9103013 0.964575758 1.527184461 27.02576397 0.099999994 1.000000024 1.445625659 VSPAS(ph)PAGS(ph)PSADFAVHGESLGDR ddPTM_HeLa_A486_30min_R1 4 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-3;Q96C92;Q96C92-2;Q96C92-4 A0A0A0MRP9;Q96C92-4 SDCCAG3 Serologically defined colon cancer antigen 3 2 0 VSPAS(0.999)PAGS(0.959)PS(0.041)ADFAVHGESLGDR;VSPAS(0.999)PAGS(0.969)PS(0.031)ADFAVHGESLGDR;VS(0.04)PAS(0.961)PAGS(0.988)PS(0.011)ADFAVHGESLGDR;VS(0.107)PAS(0.894)PAGS(0.981)PS(0.019)ADFAVHGESLGDR ;;; 260.06 2.28E-61 1575590000 558751 625712 459411 124290 652740 553408 639330 619679 509840 569369 TRUE FALSE FALSE 519585.4403 576128.3023 637307.2427 289353.4013 570867.2626 485134.1476 479362.8719 478591.6192 554033.3417 426795.2964 1.217411355 1.349893748 1.493238674 0.677967643 1.337566902 1.136690474 1.123168123 1.121361044 1.298124291 1 18.70318475 VSPGLPS(ph)PNLENGAPAVGPVQPR ddPTM_HeLa_A485_30min_R1 1 VSPGLPSPNLENGAPAVGPVQPR 23 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 VS(0.018)PGLPS(0.982)PNLENGAPAVGPVQPR 145.77 1.95E-09 255160000 41273 40835 49187 47797 63359 46689 51632 53884 39529 54442 TRUE FALSE FALSE 50454.03646 45610.29803 67383.31814 50408.02908 57050.75549 49133.56385 40600.40141 40668.86451 47462.10772 40870.61133 1.23448206 1.115968089 1.648698562 1.233356376 1.395887011 1.20217345 0.99338865 0.995063768 1.161277166 1 15.3187762 -6.561257257 3.966562508 1.038649955 1.32589128 0.490094425 0.138320479 0.193984544 6.623102368 0.054840906 0.042810015 2.75E-07 6.561257257 0.287241325 VSPGRT(ph)SDPNPAAPDSESVIVAMER ddPTM_HeLa_A486_30min_R1 1 VSPGRTSDPNPAAPDSESVIVAMER 25 1 P42858 P42858 HTT Huntingtin 1 0 VS(0.088)PGRT(0.456)S(0.456)DPNPAAPDSESVIVAMER 105.49 0.00056182 105390000 64777 76297 36821 37753 55394 80812 98627 101260 51769 110140 TRUE FALSE FALSE 60236.46681 70250.94785 51079.0773 87890.89193 48445.96799 70842.23708 73949.48143 78205.30849 56256.3786 82560.22711 0.72960636 0.850905458 0.618688672 1.064566984 0.586795479 0.858067372 0.895703464 0.947251615 0.68139806 1 16.33315932 -6.497115509 24.86360675 0.876720185 0.776535644 0.119085417 0.145015851 1650.734569 1593095.835 0.048321597 0.04244765 3.18E-07 6.497115509 -0.100184541 VSPKS(ph)PPTDQK ddPTM_HeLa_A485_30min_R1 1 VSPKSPPTDQK 11 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 VS(0.009)PKS(0.989)PPT(0.002)DQK 57.434 0.017008 269830000 267050 170790 100570 443360 307100 277620 530230 466890 225030 633770 TRUE FALSE FALSE 326454.3512 190762.4048 137775.0281 467579.6342 276524.0457 292155.7539 416942.0289 352384.4954 270191.4569 475782.8027 0.686141553 0.400944304 0.289575469 0.982758585 0.581198068 0.614052783 0.876328498 0.740641514 0.567888237 1 18.8599436 -8.613856592 0.07195262 1.621469856 6.77E-13 0.288405635 0.187289507 61.89200834 1.792004887 23.48089892 15.99974581 2.43E-09 8.613856592 -1.621469856 VSPKS(ph)PPTDQK ddPTM_HeLa_A486_30min_R1 2 VSPKSPPTDQK 11 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 VSPKS(0.989)PPT(0.011)DQK;VSPKS(0.995)PPT(0.005)DQK ; 126.71 2.75E-05 905450000 842720 767870 285660 576600 742610 1079630 1440300 1338450 551250 1506680 TRUE FALSE FALSE 783649.6798 707021.1847 396275.2022 1342353.94 649464.9292 946436.2275 1079921.706 1033714.153 599032.7938 1129397.521 0.693865238 0.626016236 0.350873094 1.18855754 0.575054325 0.838000978 0.956192736 0.915279283 0.530400309 1 20.10712194 -5.244104694 24.99786623 0.845624311 0.563828028 0.322095647 0.199316737 1035.877582 1493808.03 0.052301411 0.090317375 5.70E-06 5.244104694 -0.281796283 VSPKS(ph)PPTDQKK ddPTM_HeLa_A486_30min_R1 1 VSPKSPPTDQKK 12 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 VS(0.038)PKS(0.947)PPT(0.015)DQKK 96.673 0.0006462 392020000 911200 738290 250010 651970 605350 1129800 1654800 1461500 627280 1778300 TRUE FALSE FALSE 847329.5854 679785.2116 346820.5675 1517819.109 529421.3583 990416.763 1240751.537 1128748.354 681653.1355 1333002.105 0.635655099 0.509965595 0.26018006 1.138647196 0.397164683 0.742997148 0.930794882 0.846771622 0.511366886 1 20.34624763 -5.242555576 24.99334938 0.775873183 0.472736817 0.307709746 0.223257371 1082.896688 1433248.367 0.059017414 0.10200919 5.72E-06 5.242555576 -0.303136365 VSPLNLSSVT(ph)P ddPTM_HeLa_A485_30min_R1 3 VSPLNLSSVTP 11 0 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 VSPLNLSSVT(1)P;VSPLNLSSVT(1)P;VSPLNLSSVT(1)P ;; 129.16 0.00022941 182261000 138374 187362 179307 138428 241722 168171 200584 225623 172526 194308 TRUE FALSE FALSE 169154.8189 209272.3561 245640.1209 145989.9711 217655.3089 176976.1735 157727.5898 170288.6055 207150.3857 145870.5916 1.159622492 1.434643911 1.683959174 1.000818394 1.492112335 1.213240939 1.081284364 1.167395043 1.420096974 1 17.15432953 -6.470130111 11.24191571 1.176311022 1.356997068 0.168509247 0.199157327 1.868986823 395.6448899 0.069435051 0.061118022 3.39E-07 6.470130111 0.180686046 VSPLNLSSVT(ph)P ddPTM_HeLa_A486_30min_R1 1 VSPLNLSSVTP 11 0 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 VSPLNLSSVT(1)P 136.38 9.77E-05 61145000 75089 86312 69813 26772 91819 80700 85583 92244 72818 85562 TRUE FALSE FALSE 69825.64886 79472.32278 96846.46326 62326.56898 80302.20484 70744.0545 64169.2282 71242.05487 79129.92287 64136.71828 1.088700057 1.239108032 1.510000291 0.971776708 1.252047298 1.103019556 1.000506885 1.110784224 1.233769438 1 15.96886292 -5.285522669 24.9997108 1.103419607 1.275253423 0.293251317 0.129987292 1015.017699 1053638.861 0.036611567 0.05433565 5.18E-06 5.285522669 0.171833815 VSPS(ph)KSPSLS(ph)PS(ph)PPSPLEK ddPTM_HeLa_A486_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 VS(0.01)PS(0.495)KS(0.495)PS(0.009)LS(0.992)PS(0.735)PPS(0.265)PLEK 132.84 5.73E-06 704900000 471430 372980 133950 295130 288530 470630 686250 594490 322810 820600 TRUE FALSE FALSE 438385.1915 343423.7064 185819.0273 687077.555 252339.877 412568.4556 514542.9916 459137.6046 350791.4307 615116.4188 0.712686539 0.558306844 0.302087575 1.116987832 0.410231087 0.670716051 0.836496923 0.746423914 0.570284616 1 19.23049996 -14 0.150703823 2.202798149 0.55584818 0.18819259 0.214035865 225.8543174 2.014598212 81.50186237 1.051263726 1.00E-14 14 -1.646949969 VSPS(ph)KSPSLS(ph)PSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 VS(0.003)PS(0.489)KS(0.508)PS(0.211)LS(0.789)PS(0.236)PPS(0.764)PLEK 142.65 5.10E-08 534770000 1360600 1038900 402590 834270 900000 1347700 2019700 1753300 835020 2301300 TRUE FALSE FALSE 1265228.966 956573.7804 558483.6297 1942222.722 787113.6078 1181434.476 1514349.698 1354111.864 907400.2059 1725039.501 0.733449272 0.554522827 0.323751212 1.125900433 0.456287295 0.684873869 0.87786378 0.78497441 0.52601706 1 20.71819797 -14 0.135065773 2.045901236 0.557067721 0.162788213 0.217208223 259.6632039 2.177617869 74.00482424 1.465964345 1.00E-14 14 -1.488833515 VSPS(ph)KSPSLS(ph)PSPPSPLEK ddPTM_HeLa_A486_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VS(0.058)PS(0.471)KS(0.47)PS(0.294)LS(0.687)PS(0.017)PPS(0.003)PLEK 70.091 0.0061451 486150000 152060 136550 78588 105370 159260 203010 270420 244870 120150 269630 TRUE FALSE FALSE 141401.3792 125729.2807 109019.3783 245306.6851 139284.1258 177964.6903 202758.0558 189118.4465 130564.6987 202112.893 0.699615829 0.622074519 0.539398435 1.213711216 0.689140231 0.880521216 1.003192091 0.935706989 0.645998861 1 17.62480183 -5.220289279 24.98059147 0.900557401 0.620534019 0.419583452 0.155711808 492.2510065 298825.3549 0.040835023 0.070727426 6.02E-06 5.220289279 -0.280023383 VSPS(ph)KSPSLSPSPPSPLEK ddPTM_HeLa_A485_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VS(0.092)PS(0.522)KS(0.383)PS(0.002)LS(0.001)PSPPSPLEK 98.019 0.0001545 217410000 152820 189860 195590 202490 254300 235440 259740 327850 197620 277960 TRUE FALSE FALSE 186814.2818 212062.4754 267946.8802 213551.516 228980.9991 247767.2743 204244.4271 247444.2735 237280.5213 208669.6875 0.89526315 1.016259132 1.284071891 1.023395006 1.097337145 1.187365915 0.978792989 1.18581801 1.137110637 1 17.67086152 -4.524372984 24.99816339 1.115157168 0.925512085 0.359115082 0.0898501 40.01797174 669504.1429 0.021684002 0.05833304 2.99E-05 4.524372984 -0.189645084 VSPS(ph)TSYTPSR ddPTM_HeLa_A486_30min_R1 1 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VS(0.17)PS(0.756)T(0.056)S(0.018)YTPSR 191.04 7.22E-11 1778600000 875140 945590 705440 326910 1042100 944580 1032500 1120700 771650 919890 TRUE FALSE FALSE 813797.2052 870658.0046 978605.2603 761063.0011 911390.1008 828047.3234 774157.5793 865541.0747 838537.2433 689543.5565 1.180196954 1.262658459 1.419207316 1.103719981 1.321729559 1.20086297 1.122710193 1.25523771 1.216075816 1 19.39528216 -13.95001999 0.192288075 6.45E-12 1.275063523 0.401812003 0.086493513 134.9338491 1.346900023 51.63480738 0.226494868 1.12E-14 13.95001999 1.275063523 VSPSKS(ph)PS(ph)LSPS(ph)PPSPLEK ddPTM_HeLa_A485_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 VS(0.05)PS(0.392)KS(0.559)PS(0.558)LS(0.441)PS(0.693)PPS(0.307)PLEK 80.83 0.0044419 152790000 168220 137150 96897 267080 200390 174260 265230 228380 124980 388510 TRUE FALSE FALSE 205639.9586 153188.4995 132743.2325 281669.9041 180438.468 183383.9841 208561.4438 172369.4469 150062.3396 291661.607 0.705063518 0.525226824 0.45512755 0.965742139 0.618656908 0.628755996 0.715080212 0.590991213 0.514508376 1 18.15393596 -11.04058685 2.695270252 1.467125902 0.636971737 0.396646434 0.134868845 56753750.23 30263427.25 163202790.3 0.034503648 9.11E-12 11.04058685 -0.830154165 VSPSKS(ph)PS(ph)LSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 VS(0.072)PS(0.414)KS(0.516)PS(0.553)LS(0.444)PS(0.215)PPS(0.786)PLEK 68.361 0.011709 83082000 106230 79849 27401 71406 77536 114530 168980 138690 64681 185100 TRUE FALSE FALSE 98783.82557 73521.47443 38011.40102 166236.7767 67810.71189 100400.4531 126699.4167 107113.3146 70287.60116 138749.7552 0.711956756 0.529885435 0.273956527 1.198105009 0.488726714 0.723608146 0.91315056 0.771989215 0.506578199 1 17.0821257 -5.232559404 24.9995727 0.779331319 0.507728233 0.26406627 0.223791776 1050.450707 909307.8388 0.058966583 0.102110585 5.85E-06 5.232559404 -0.271603087 VSPSKS(ph)PSLS(ph)PSPPS(ph)PLEK ddPTM_HeLa_A485_30min_R1 2 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 VS(0.013)PS(0.26)KS(0.726)PS(0.118)LS(0.879)PS(0.18)PPS(0.824)PLEK;VS(0.002)PS(0.178)KS(0.819)PS(0.007)LS(0.986)PS(0.122)PPS(0.886)PLEK ; 129.5 7.94E-06 1073010000 1133000 724930 469800 1950400 1096200 988110 1871300 1474600 706840 2467200 TRUE FALSE FALSE 1385031.941 809704.2574 643598.57 2056945.413 987058.479 1039845.912 1471481.468 1112952.038 848696.3045 1852172.445 0.747787791 0.437164617 0.347483071 1.110558263 0.532919319 0.561419599 0.794462455 0.600890074 0.458216678 1 20.820787 -11.14398124 2.473134932 1.85754383 0.622282441 0.229844462 0.208004663 25634015.12 4020729.332 124112010.7 0.054344332 7.18E-12 11.14398124 -1.235261389 VSPSKS(ph)PSLSPSPPS(ph)PLEK ddPTM_HeLa_A485_30min_R1 2 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VS(0.012)PS(0.389)KS(0.597)PS(0.002)LS(0.008)PS(0.29)PPS(0.701)PLEK;VS(0.01)PS(0.435)KS(0.554)PS(0.001)LSPS(0.037)PPS(0.962)PLEK ; 130.27 4.27E-06 905040000 702560 577160 334350 1148250 804940 699900 1211730 896440 508990 1401050 TRUE FALSE FALSE 858842.0482 644653.8414 458039.9785 1210975.99 724797.3473 736545.6817 952833.9866 676586.6844 611139.6243 1051794.019 0.816549659 0.61290883 0.435484487 1.151343293 0.689105789 0.700275594 0.905913106 0.643269188 0.58104497 1 20.00442077 -11.11333362 2.597479619 1.536244323 0.727823091 0.162111531 0.186701913 22418374.87 5140130.504 71426042.75 0.046349734 7.70E-12 11.11333362 -0.808421232 VSPSKS(ph)PSLSPSPPS(ph)PLEK ddPTM_HeLa_A486_30min_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VSPS(0.029)KS(0.97)PS(0.001)LSPS(0.001)PPS(0.999)PLEK 183.65 4.41E-18 710470000 1160300 963650 410530 503230 906500 1122100 1435300 1310500 698100 1573100 TRUE FALSE FALSE 1078968.962 887286.8644 569498.2104 1171544.872 792798.3172 983666.7107 1076172.759 1012127.758 758611.8701 1179185.521 0.915012051 0.752457394 0.482958958 0.993520401 0.672327045 0.834191646 0.912640751 0.858327837 0.643335469 1 20.16935928 -6.489084289 23.43927646 0.846290904 0.759214116 0.074413809 0.152462764 877.8338083 608851.552 0.053031496 0.046729993 3.24E-07 6.489084289 -0.087076787 VSPSTSYT(ph)PSR ddPTM_HeLa_A485_30min_R1 5 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VSPSTSYT(0.997)PS(0.002)R;VSPSTS(0.001)YT(0.977)PS(0.021)R;VSPSTSYT(0.994)PS(0.006)R;VSPSTSYT(0.989)PS(0.011)R;VSPSTSYT(0.999)PS(0.001)R ;;;; 243.85 2.91E-21 2488970000 1339030 1597460 1551960 1319400 2001930 1571240 1881500 2071620 1363830 1582960 TRUE FALSE FALSE 1636892.604 1784269.051 2126094.586 1391475.481 1802610.82 1653507.697 1479502.155 1563551.947 1637538.171 1188357.204 1.377441562 1.501458522 1.789103965 1.170923588 1.51689308 1.391423127 1.244997842 1.315725559 1.377984806 1 20.18053713 -12.54825326 0.112180715 7.71E-05 1.680704126 0.448950247 0.150340619 99.38952712 1.03363506 25.06078422 1.959227278 2.83E-13 12.54825326 1.680627073 VSPSTSYT(ph)PSR ddPTM_HeLa_A486_30min_R1 5 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VSPST(0.001)S(0.002)YT(0.994)PS(0.004)R;VSPSTSYT(0.997)PS(0.003)R;VSPST(0.001)SYT(0.996)PS(0.002)R;VSPST(0.001)S(0.001)YT(0.997)PS(0.001)R;VSPSTSYT(0.99)PS(0.009)R ;;;; 210.13 2.04E-14 2520330000 1425520 1623420 1307290 478394 1758740 1389600 1579670 1568920 1223340 1330580 TRUE FALSE FALSE 1325598.409 1494774.287 1813507.698 1113725.409 1538142.43 1218165.28 1184419.858 1211711.165 1329380.096 997394.1074 1.329061802 1.498679685 1.818245852 1.11663524 1.542161136 1.221347982 1.187514393 1.214877004 1.332853369 1 19.92780415 -6.108485258 0.973256152 1.183967374 1.508265439 0.339522927 0.183801589 0.648803822 1.322049197 0.098728188 0.105306133 7.79E-07 6.108485258 0.324298065 VSPTTSPRPAS(ph)PVPGSER ddPTM_HeLa_A485_30min_R1 1 VSPTTSPRPASPVPGSER 18 1 A0A5E8;Q99501;Q99501-2;Q99501-4 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VS(0.001)PT(0.003)T(0.003)S(0.003)PRPAS(0.99)PVPGS(0.001)ER 58.914 0.0027553 0 93047 156660 139580 210370 140230 117050 139310 157260 115660 164290 TRUE FALSE FALSE 113744.9841 174980.0242 191216.4504 221861.9804 126268.2088 123178.557 109545.2804 118691.7384 138871.9011 123335.5265 0.922240228 1.418731724 1.550376082 1.798848934 1.023778082 0.998727297 0.888189182 0.962348334 1.125968365 1 16.9122289 -5.896152107 10.35264976 0.988866412 1.431057091 0.494556187 0.209393513 0.289702881 26.73900857 0.067775198 0.076889246 1.27E-06 5.896152107 0.442190679 VSQGSAESLS(ph)PSFR ddPTM_HeLa_A485_30min_R1 1 VSQGSAESLSPSFR 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 VSQGSAES(0.001)LS(0.995)PS(0.005)FR 177.3 5.34E-13 314350000 146830 195730 203760 189430 233720 210920 254550 251210 197230 255280 TRUE FALSE FALSE 179491.8269 218618.9209 279139.3032 199778.0812 210450.0162 221963.4451 200163.313 189600.3536 236812.2519 191643.3941 0.93659282 1.14075897 1.456555831 1.042447 1.098133422 1.158210781 1.044457149 0.989339364 1.235692224 1 17.54806474 VSQNPILTSLLQITGNGGSTIGS(ph)SPTPPHHTPPPVSSMAGNTK ddPTM_HeLa_A485_30min_R1 1 VSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTK 43 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 VSQNPILTSLLQIT(0.007)GNGGS(0.081)T(0.081)IGS(0.356)S(0.356)PT(0.098)PPHHT(0.015)PPPVS(0.005)S(0.001)MAGNTK 81.517 0.00023763 66194000 11125 17551 12002 10244 18531 17611 22220 23999 12964 18229 TRUE FALSE FALSE 13599.71787 19603.43678 16442.03924 10803.60378 16685.98857 18533.08473 17472.51548 18113.20762 15565.75589 13684.84578 0.993779403 1.432492342 1.201477862 0.789457474 1.2193041 1.354277938 1.276778399 1.323596036 1.137444743 1 13.74029156 -5.977689062 24.99965251 1.24723617 1.118397128 0.076046166 0.179061576 585.6562676 656231.0157 0.056798905 0.064400049 1.05E-06 5.977689062 -0.128839041 VSQNPILTSLLQITGNGGSTIGS(ph)SPTPPHHTPPPVSSMAGNTK ddPTM_HeLa_A486_30min_R1 2 VSQNPILTSLLQITGNGGSTIGSSPTPPHHTPPPVSSMAGNTK 43 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 VSQNPILTSLLQIT(0.027)GNGGS(0.084)T(0.084)IGS(0.353)S(0.353)PT(0.073)PPHHT(0.021)PPPVS(0.002)S(0.002)MAGNT(0.001)K;VSQNPILTSLLQITGNGGS(0.019)T(0.019)IGS(0.311)S(0.311)PT(0.311)PPHHT(0.024)PPPVS(0.002)S(0.002)MAGNTK ; 111.6 6.46E-07 84606000 38227 45679 32786 5786.9 48294 33770 43731 38028 39300 30771 TRUE FALSE FALSE 35547.4847 42059.22968 45481.61724 13472.19565 42236.5162 29603.80075 32789.04126 29369.85455 42706.55564 23065.74131 1.541137751 1.82345016 1.971825515 0.584078156 1.8311363 1.283453254 1.421547255 1.273310671 1.85151455 1 14.49346404 VSQSALNPHQS(ph)PDFKR ddPTM_HeLa_A485_30min_R1 6 VSQSALNPHQSPDFKR 16 1 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR ;;;;; 247.8 5.85E-42 4377820000 2952730 2934930 2264630 3608410 3998520 3336170 4882720 5219750 2898510 5447750 TRUE FALSE FALSE 3609554.602 3278144.533 3102410.876 3805528.301 3600413.309 3510846.703 3839486.984 3939598.128 3480214.37 4089726.183 0.882590775 0.801555993 0.758586452 0.930509313 0.88035559 0.858455198 0.938812725 0.963291416 0.850965129 1 21.96357282 -6.536359185 0.211898429 1.015385089 0.763963133 0.425141292 0.053145177 3.89940471 0.507637593 0.168471564 0.329750031 2.91E-07 6.536359185 -0.251421956 VSQSALNPHQS(ph)PDFKR ddPTM_HeLa_A486_30min_R1 5 VSQSALNPHQSPDFKR 16 1 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR ;;;; 235.61 2.12E-41 3061250000 2973930 2804760 1636109 857889 2608060 2850240 3607760 3314210 2257510 3653830 TRUE FALSE FALSE 2765472.864 2582500.603 2269654.221 1997208.947 2280932.796 2498606.368 2705060.289 2559636.732 2453192.784 2738887.186 1.009706745 0.942901415 0.828677513 0.729204532 0.832795453 0.912270641 0.987649401 0.934553546 0.895689606 1 21.38515841 -6.498841947 5.976583138 0.949400916 0.863403845 0.226792744 0.074174649 0.305808044 37.47607927 0.030417569 0.025586553 3.17E-07 6.498841947 -0.085997071 VSRLSTST(ph)TIENIEITIK ddPTM_HeLa_A485_30min_R1 1 VSRLSTSTTIENIEITIK 18 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 VS(0.139)RLS(0.086)T(0.139)S(0.227)T(0.375)T(0.035)IENIEITIK 184.95 9.04E-18 247810000 130040 119640 94215 128990 135850 114890 164550 180420 96237 172570 TRUE FALSE FALSE 158966.9494 133630.8573 129069.0491 136036.3971 122324.297 120905.4627 129392.5483 136171.7121 115550.8832 129551.4749 1.227056268 1.031488506 0.996276184 1.050056722 0.944213851 0.933261955 0.998773255 1.051101211 0.891930279 1 16.98316591 VSRT(ph)PEPK ddPTM_HeLa_A485_30min_R1 4 VSRTPEPK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.012)RT(0.988)PEPK;VS(0.029)RT(0.971)PEPK;VS(0.014)RT(0.986)PEPK;VS(0.031)RT(0.969)PEPK ;;; 74.094 0.016209 9907700000 5448200 5325830 4082740 7399300 6571500 6167200 9481800 9836500 5056540 9911800 TRUE FALSE FALSE 6660133.294 5948639.49 5593115.423 7803505.023 5917218.386 6490105.056 7455935.971 7424082.952 6071341.197 7440970.673 0.89506243 0.799444018 0.751664758 1.048721379 0.795221302 0.872212154 1.002011202 0.997730441 0.815934031 1 22.8270594 -5.898296615 0.648204233 0.951592714 0.824421043 0.163686953 0.092804666 1.549441834 1.422786762 0.065513265 0.104490415 1.26E-06 5.898296615 -0.127171671 VSRT(ph)PEPK ddPTM_HeLa_A486_30min_R1 4 VSRTPEPK 8 1 A9Z1X7;Q8IYB3-2;E9PCT1;Q8IYB3 A9Z1X7;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.009)RT(0.991)PEPK;VS(0.003)RT(0.997)PEPK;VS(0.035)RT(0.965)PEPK;VS(0.012)RT(0.988)PEPK ;;; 86.879 0.0053275 9125100000 6695200 5533600 3701980 3716870 6032100 7621100 9439200 8134700 4892660 9337900 TRUE FALSE FALSE 6225901.054 5095097.383 5135485.798 8653061.2 5275497.771 6680886.168 7077412.322 6282606.389 5316759.708 6999629.06 0.88946157 0.727909628 0.733679707 1.236217109 0.753682477 0.954462888 1.011112483 0.897562762 0.759577352 1 22.73884704 VSS(ph)PLSPLSPGIK ddPTM_HeLa_A486_30min_R1 1 VSSPLSPLSPGIK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VSS(1)PLSPLSPGIK 292.57 1.58E-57 97350000 4021.3 0 3317.6 2660 0 3104.7 4035.9 6416.7 0 3534.8 TRUE FALSE FALSE 3739.427636 0 4602.263568 6192.614429 0 2721.67368 3026.075133 4955.757486 0 2649.663072 1.411284203 0 1.73692407 2.337132783 0 1.02717727 1.142060349 1.870334963 0 1 11.3715932 -5.773400539 24.99642651 0.907914911 1.299496504 0.100682526 0.749774643 755.8799839 1579632.765 0.239179964 0.273270781 1.68E-06 5.773400539 0.391581593 VSS(ph)PLSPLSPGIKS(ph)PTIPR ddPTM_HeLa_A485_30min_R1 1 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 2 0 VS(0.476)S(0.522)PLS(0.066)PLS(0.046)PGIKS(0.778)PT(0.112)IPR 55.469 0.032843 110830000 61528 62886 56633 91035 92545 75264 104400 118160 63758 128010 TRUE FALSE FALSE 75214.69133 70239.97066 77583.9034 96008.01154 83330.89485 79204.70666 82094.08713 89181.07473 76553.64578 96099.46285 0.78267546 0.730909087 0.80732921 0.999048368 0.867131744 0.824195103 0.854261665 0.928008046 0.796608467 1 16.55224075 -1 0.066925279 1.115710821 0.273692958 0.346559958 0.06970259 352.2694924 1.751330355 4.029105729 28.19570774 0.1 1 -0.842017864 VSS(ph)PPNAMMSSR ddPTM_HeLa_A485_30min_R1 2 VSSPPNAMMSSR 12 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 VS(0.001)S(0.999)PPNAMMSSR;VS(0.14)S(0.86)PPNAMMSSR ; 114.88 0.00028644 1354730000 162580 196210 175270 192640 242320 199840 260530 271190 159280 246040 TRUE FALSE FALSE 198745.3601 219155.0527 240109.6666 203163.4354 218193.77 210303.3134 204865.6372 204680.2273 191246.035 184706.756 1.076004822 1.186502635 1.299950645 1.099924225 1.181298262 1.138579432 1.109139923 1.108136116 1.035403572 1 17.49487711 -7.47833957 0.710713409 0.998309513 1.177194201 0.501465358 0.056898582 0.551338937 0.570687262 0.05474225 0.024681349 3.32E-08 7.47833957 0.178884688 VSS(ph)PPNAMMSSR ddPTM_HeLa_A486_30min_R1 4 VSSPPNAMMSSR 12 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 VS(0.019)S(0.98)PPNAMMSSR;VS(0.006)S(0.994)PPNAMMSSR;VS(0.011)S(0.988)PPNAMMSSR;VS(0.002)S(0.998)PPNAMMSSR ;;; 94.355 0.0017025 1983330000 1497400 1488760 1106650 567110 1618440 1482190 1686910 1688920 1191690 1700660 TRUE FALSE FALSE 1392439.993 1370785.236 1535174.517 1320260.74 1415440.164 1299332.468 1264827.276 1304389.785 1294986.649 1274803.667 1.092277995 1.075291256 1.204243883 1.035658098 1.110320123 1.019241238 0.992174175 1.023208372 1.015832228 1 20.28184364 -6.298111183 4.904365158 1.009413326 1.104072396 0.571601325 0.04049149 0.153708394 9.390451276 0.014241516 0.012817447 5.03E-07 6.298111183 0.09465907 VSS(ph)PSPELGTTPASIFR ddPTM_HeLa_A485_30min_R1 3 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VSS(1)PSPELGTTPASIFR;VS(0.338)S(0.649)PS(0.013)PELGTTPASIFR;VS(0.001)S(0.974)PS(0.026)PELGTTPASIFR ;; 268.93 2.73E-52 543610000 270593 309964 299291 310434 423680 314828 432710 439910 306941 421360 TRUE FALSE FALSE 330785.4793 346211.5935 410011.1954 327392.2234 381496.9316 331311.9073 340257.9736 332021.3827 368541.2433 316322.7066 1.045721576 1.094488591 1.296180094 1.034994379 1.206037138 1.047385788 1.075667243 1.049628673 1.16507995 1 18.27103759 -6.291574731 24.94275181 1.071161303 1.136551601 0.148827519 0.080979403 1422.764028 1177604.202 0.027850307 0.024564883 5.11E-07 6.291574731 0.065390299 VSS(ph)PSPELGTTPASIFR ddPTM_HeLa_A486_30min_R1 2 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VS(0.006)S(0.816)PS(0.178)PELGTTPASIFR;VSS(1)PSPELGTTPASIFR ; 374.19 8.21E-120 363060000 206937 242010 176413 82731 256610 226260 252600 253750 196573 225000 TRUE FALSE FALSE 192431.7849 222832.2462 244724.8381 192601.949 224423.581 198346.3416 189396.8083 195976.6643 213612.1059 168658.5355 1.140954914 1.321203493 1.451007726 1.141963841 1.330638739 1.176023147 1.122960114 1.161972999 1.266535994 1 17.36374581 -6.390056625 5.323795464 1.151226738 1.28136083 0.285313913 0.104472171 0.325999207 12.77988916 0.036985855 0.032376234 4.07E-07 6.390056625 0.130134092 VSS(ph)PTKPK ddPTM_HeLa_A485_30min_R1 3 VSSPTKPK 8 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 VS(0.088)S(0.912)PTKPK;VS(0.152)S(0.846)PT(0.002)KPK;VS(0.133)S(0.866)PT(0.001)KPK ;; 117.28 0.00047041 6352920000 7176800 4487780 2036830 12956800 4269800 6293100 9475900 10282700 4725480 15187700 TRUE FALSE FALSE 8773254.4 5012586.833 2790338.177 13664597.18 3844683.72 6622596.985 7451296.554 7760851.702 5673840.491 11401685.9 0.769469926 0.439635583 0.244730315 1.198471638 0.33720309 0.580843662 0.653525857 0.680675803 0.497631714 1 23.44274383 -10.4838455 2.630808819 1.017547841 0.59828378 0.186274404 0.250626764 14996499.84 14993450.28 1914293.322 0.062609219 3.28E-11 10.4838455 -0.419264061 VSS(ph)PTKPK ddPTM_HeLa_A486_30min_R1 3 VSSPTKPK 8 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 VS(0.263)S(0.737)PTKPK;VS(0.161)S(0.839)PT(0.001)KPK;VS(0.03)S(0.969)PT(0.002)KPK ;; 125.68 0.00218 2055240000 5487730 2564390 1916470 3048800 2703600 8327300 6689510 5084340 4787520 9809400 TRUE FALSE FALSE 5103068.466 2361178.397 2658578.509 7097760.478 2364489.278 7299962.392 5015723.844 3926746.772 5202506.088 7353062.392 0.69400587 0.321114968 0.361560717 0.965279512 0.321565241 0.992778519 0.682127198 0.534028757 0.707529164 1 22.8099138 -5.235965432 24.86828608 0.714184404 0.445115942 0.248407716 0.222336635 1035.042199 1010431.924 0.057352986 0.099288714 5.81E-06 5.235965432 -0.269068462 VSS(ph)PTVNTTLR ddPTM_HeLa_A485_30min_R1 4 VSSPTVNTTLR 11 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 VS(0.003)S(0.997)PTVNTTLR;VSS(0.993)PT(0.006)VNTTLR;VS(0.002)S(0.998)PTVNTTLR;VS(0.001)S(0.99)PT(0.009)VNTTLR ;;; 232.98 5.37E-19 3476980000 2927100 3364540 3194330 3439380 4280330 3535510 4612700 4873900 3242340 4695430 TRUE FALSE FALSE 3578223.297 3757993.685 4376045.594 3627264.62 3854165.316 3720623.837 3627158.963 3678568.383 3893047.897 3524945.714 1.015114441 1.066113918 1.241450493 1.029027087 1.09339707 1.055512379 1.028997113 1.04358157 1.10442776 1 21.74916961 -5.975125835 1.683749229 1.048403557 1.099160686 0.099020545 0.062440622 0.890595466 5.141072333 0.024525974 0.027661299 1.06E-06 5.975125835 0.050757129 VSS(ph)PTVNTTLR ddPTM_HeLa_A486_30min_R1 3 VSSPTVNTTLR 11 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 VS(0.011)S(0.987)PT(0.002)VNTTLR;VS(0.003)S(0.997)PTVNTTLR;VS(0.001)S(0.999)PTVNTTLR ;; 262.11 1.72E-27 3034580000 2980710 3256870 2385510 1067180 3543660 3043300 3498240 3643990 2676410 3353220 TRUE FALSE FALSE 2771777.621 2998783.76 3309243.358 2484448.972 3099181.119 2667848.588 2622943.351 2814333.025 2908403.374 2513551.886 1.102733402 1.193046293 1.316560592 0.988421598 1.232988719 1.061385923 1.043520671 1.119663787 1.157089054 1 21.26129604 -5.263852152 24.99992965 1.094448685 1.203006711 0.289129822 0.084053857 292.2205298 3027853.191 0.022924998 0.035915622 5.45E-06 5.263852152 0.108558026 VSS(ph)PVFGATSSIK ddPTM_HeLa_A485_30min_R1 4 VSSPVFGATSSIK 13 0 I6L8A6;F6Q6H0;Q99708-3;Q99708;Q99708-2 I6L8A6 RBBP8 DNA endonuclease RBBP8 1 0 VS(0.286)S(0.713)PVFGATSSIK;VSS(1)PVFGATSSIK;VS(0.019)S(0.981)PVFGATSSIK;VSS(1)PVFGATSSIK ;;; 222.45 2.03E-27 1620910000 2598280 2392140 1960430 3377850 3257310 2784580 4078760 3553750 2387380 4538600 TRUE FALSE FALSE 3176258.422 2671879.964 2685674.637 3562373.392 2933000.779 2930376.303 3207299.606 2682187.24 2866505.268 3407210.547 0.932216656 0.784183991 0.788232661 1.045539553 0.860821701 0.86005143 0.941327095 0.787209127 0.841305587 1 21.70015967 VSS(ph)PVFGATSSIK ddPTM_HeLa_A486_30min_R1 3 VSSPVFGATSSIK 13 0 I6L8A6;F6Q6H0;Q99708-3;Q99708;Q99708-2 I6L8A6 RBBP8 DNA endonuclease RBBP8 1 0 VSS(1)PVFGATSSIK;VS(0.004)S(0.996)PVFGATSSIK;VS(0.228)S(0.772)PVFGATSSIK ;; 290.26 1.82E-57 1076580000 4052810 3913930 2077740 1517290 3748530 3996430 4764990 4777680 3208790 5332310 TRUE FALSE FALSE 3768728.948 3603775.933 2882296.572 3532327.8 3278354.414 3503391.099 3572739.103 3689906.56 3486930.501 3997064.868 0.942874102 0.901605566 0.721103276 0.883730416 0.820190445 0.876490929 0.893840661 0.923154035 0.872372757 1 21.93050956 -8.379838599 0.522093121 1.003608767 0.852228565 0.326685039 0.057823704 1.8848731 1.023983898 0.08350589 0.03042212 4.17E-09 8.379838599 -0.151380202 VSS(ph)SGLTDSLFILK ddPTM_HeLa_A485_30min_R1 1 VSSSGLTDSLFILK 14 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 0 VS(0.016)S(0.968)S(0.016)GLTDSLFILK 198.23 9.76E-22 34429000 68960 60380 47418 82356 77346 67372 90733 86474 59927 121700 TRUE FALSE FALSE 84299.91409 67440.91576 64959.89143 86854.89974 69645.16066 70899.49374 71347.15333 65266.11591 71953.79922 91362.42972 0.922697813 0.738169026 0.711013177 0.950663199 0.762295408 0.776024608 0.78092443 0.714364932 0.787564423 1 16.4793134 VSS(ph)SGLTDSLFILK ddPTM_HeLa_A486_30min_R1 2 VSSSGLTDSLFILK 14 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 0 VSS(0.999)S(0.001)GLTDSLFILK;VS(0.018)S(0.974)S(0.008)GLTDSLFILK ; 349.81 5.80E-95 78119000 245254 272660 137678 99230 234772 288820 292600 276560 202750 291740 TRUE FALSE FALSE 228062.9611 251053.4286 190990.6087 231012.4548 205324.7066 253188.3249 219388.3852 213593.3253 220324.5332 218686.4051 1.042876721 1.148006564 0.873353827 1.056364042 0.938900187 1.157768929 1.003209985 0.976710579 1.007490764 1 17.73850401 -4.710357225 24.99999435 1.006225287 1.095441514 0.20425723 0.073562059 167.4183641 81933.13651 0.018020861 0.047678589 1.95E-05 4.710357225 0.089216227 VSS(ph)SPQKEGR ddPTM_HeLa_A485_30min_R1 3 VSSSPQKEGR 10 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 VS(0.09)S(0.455)S(0.455)PQKEGR;VS(0.001)S(0.499)S(0.499)PQKEGR;VS(0.006)S(0.497)S(0.497)PQKEGR ;; 138.45 0.00035483 156932000 568910 686790 462289 606099 832730 835150 1148280 1377170 577118 947600 TRUE FALSE FALSE 695462.0668 767104.1162 633308.9386 639208.6536 749820.4773 878877.1626 902940.5974 1039416.898 692940.289 711380.7593 0.977622824 1.078331268 0.890253117 0.898546447 1.054035364 1.235452535 1.269278914 1.461125965 0.974077918 1 19.44026243 -6.11098295 3.570247556 1.221607163 0.965015389 0.359130473 0.139305072 0.239409598 5.582032874 0.046880873 0.047571042 7.74E-07 6.11098295 -0.256591774 VSS(ph)SPQKEGR ddPTM_HeLa_A486_30min_R1 3 VSSSPQKEGR 10 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 VS(0.005)S(0.498)S(0.498)PQKEGR;VS(0.056)S(0.472)S(0.472)PQKEGR;VS(0.057)S(0.471)S(0.471)PQKEGR ;; 145.81 2.53E-06 1282390000 3167970 2242510 1645840 1554380 3171870 2996590 3953200 3650400 2229250 4414200 TRUE FALSE FALSE 2945911.662 2064805.341 2283153.325 3618675.194 2774024.488 2626901.193 2964067.547 2819283.608 2422483.185 3308855.588 0.890311343 0.624024012 0.690012986 1.093633462 0.838363722 0.793900224 0.895798402 0.852041902 0.732121158 1 21.6579009 -14 0.174963922 1.6386543 0.78870368 0.137854341 0.124094148 290.3780526 2.767174774 65.57421639 0.438091518 1.00E-14 14 -0.84995062 VSSPLS(ph)PLSPGIK ddPTM_HeLa_A486_30min_R1 1 VSSPLSPLSPGIK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VS(0.001)S(0.004)PLS(0.992)PLS(0.004)PGIK 98.531 0.00092878 112090000 242370 247520 127260 119030 235050 273060 303810 289630 190110 283440 TRUE FALSE FALSE 225381.1146 227905.6137 176538.4801 277107.8554 205567.8372 239372.6335 227793.5246 223687.5716 206588.8879 212464.7791 1.060792831 1.072674797 0.830907037 1.304253141 0.967538423 1.126646188 1.072147231 1.052821896 0.972344163 1 17.69686418 -7.708641264 6.17312427 0.986296412 1.061640038 0.066588498 0.11218017 0.518870291 42.15713037 0.076860167 0.027296461 1.96E-08 7.708641264 0.075343627 VSSPLS(ph)PLSPGIKS(ph)PTIPR ddPTM_HeLa_A486_30min_R1 1 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 2 0 VS(0.002)S(0.01)PLS(0.983)PLS(0.008)PGIKS(0.99)PT(0.007)IPR 103.92 0.00010655 191250000 123870 125600 79280 69575 148220 145570 175410 156840 105010 174700 TRUE FALSE FALSE 115187.3527 115646.9986 109979.3392 161974.1161 129628.8655 127611.0534 131520.5627 121130.9558 114112.3513 130953.9829 0.879601751 0.883111731 0.839831953 1.23687812 0.989881046 0.974472487 1.004326557 0.924988711 0.871392751 1 16.99870041 VSSPLSPLS(ph)PGIK ddPTM_HeLa_A485_30min_R1 2 VSSPLSPLSPGIK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VSSPLS(0.002)PLS(0.998)PGIK;VSSPLSPLS(1)PGIK ; 266.77 9.10E-42 359870000 430200 387130 281600 538940 492450 349240 583130 455640 344320 637110 TRUE FALSE FALSE 525896.5058 432401.4859 385775.5584 568380.9275 443419.9489 367525.6664 458539.5118 343893.5756 413421.8657 478290.2021 1.099534349 0.90405675 0.806572154 1.188359964 0.927093942 0.768415629 0.958705635 0.719006106 0.864374524 1 18.86752671 -6.003795219 24.98907551 0.8502626 0.988853269 0.213299798 0.12279153 248.0703345 1633400.624 0.037923707 0.042071953 9.91E-07 6.003795219 0.13859067 VSSPLSPLSPGIKS(ph)PTIPR ddPTM_HeLa_A485_30min_R1 2 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VSSPLSPLSPGIKS(0.979)PT(0.021)IPR;VSSPLSPLSPGIKS(0.999)PT(0.001)IPR ; 267.25 6.60E-59 12615100000 4401200 5052400 3726100 5811600 6532800 6102800 8265300 9075500 4769000 8177000 TRUE FALSE FALSE 5380231.756 5643234.23 5104539.446 6129072.992 5882371.494 6422333.171 6499351.134 6849719.395 5726094.556 6138624.387 0.876455606 0.919299484 0.831544516 0.99844405 0.958255649 1.046216997 1.05876345 1.115839472 0.932797675 1 22.54948397 -5.625736016 1.471189029 1.03689262 0.879762826 0.567540848 0.054442387 0.275913646 1.230573102 0.01912825 0.029989557 2.37E-06 5.625736016 -0.157129794 VSSPLSPLSPGIKS(ph)PTIPR ddPTM_HeLa_A486_30min_R1 2 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VSSPLSPLSPGIKS(0.994)PT(0.006)IPR;VSSPLSPLSPGIKS(0.903)PT(0.097)IPR ; 309.64 9.08E-90 11878800000 10503500 10838500 7085400 5062900 12707800 13275900 14836100 15039700 9373600 15448100 TRUE FALSE FALSE 9767258.89 9979617.787 9829056.634 11786687.06 11113869.23 11638054.44 11123950.86 11615488.62 10186111.2 11579795.21 0.843474234 0.861812977 0.848810921 1.017866625 0.959763884 1.00503111 0.960634507 1.003082387 0.879645193 1 23.4651064 -5.250017869 24.99822797 0.975274292 0.852410724 0.698824042 0.037236099 389.6299864 852780.5776 0.009593975 0.016435367 5.62E-06 5.250017869 -0.122863568 VSSPS(ph)PELGTTPASIFR ddPTM_HeLa_A485_30min_R1 1 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VS(0.007)S(0.029)PS(0.964)PELGTTPASIFR 108.63 0.00017775 199110000 69855 80265 61189 67504 104810 73697 99125 118870 84603 108550 TRUE FALSE FALSE 85394.00375 89651.29354 83825.35739 71191.57259 94374.74839 77555.66096 77946.13397 89716.94612 101582.0461 81490.48271 1.047901557 1.100144343 1.028652115 0.873618246 1.158107613 0.95171434 0.956505979 1.10094999 1.246551041 1 16.31434396 -7.509134428 23.51044798 1.140100495 1.018558026 0.189230106 0.09347689 408.0104389 697938.3 0.052918186 0.023656251 3.10E-08 7.509134428 -0.121542469 VSSPS(ph)PELGTTPASIFR ddPTM_HeLa_A486_30min_R1 1 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VSS(0.399)PS(0.601)PELGTTPASIFR 155.26 2.35E-08 143300000 134970 150930 132190 55232 183680 158850 190210 161240 126750 172990 TRUE FALSE FALSE 125509.3 138969.7571 183377.5082 128582.8873 160641.1417 139252.7021 142617.4462 124529.1718 137736.7921 129672.178 0.967896907 1.071700647 1.41416232 0.991599657 1.238825044 1.073882649 1.09983073 0.960338399 1.062192323 1 16.98450945 -6.923823151 1.992661036 1.009404466 1.139150012 0.151582536 0.122944818 0.624079251 4.977193523 0.068692467 0.038239526 1.19E-07 6.923823151 0.129745546 VSSS(ph)PGVK ddPTM_HeLa_A485_30min_R1 1 VSSSPGVK 8 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 VS(0.001)S(0.223)S(0.776)PGVK 112.3 0.0011237 275670000 1219300 1095600 1063600 1994600 1655500 1167700 1809500 1363700 1331000 2551300 TRUE FALSE FALSE 1490529.078 1223720.89 1457069.9 2103559.947 1490672.607 1228838.966 1422885.543 1029250.437 1598119.491 1915307.863 0.778219057 0.638916027 0.760749709 1.098288159 0.778293994 0.641588222 0.742901739 0.537381199 0.834393009 1 20.86914488 -6.006071206 24.99304338 0.720497638 0.819047893 0.021762762 0.157112152 795.0961508 3273151.235 0.050271478 0.055149701 9.86E-07 6.006071206 0.098550255 VSSS(ph)PGVK ddPTM_HeLa_A486_30min_R1 2 VSSSPGVK 8 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 VSS(0.002)S(0.998)PGVK;VSS(0.001)S(0.999)PGVK ; 182.16 7.33E-06 889090000 1234430 1324400 784810 621540 1271450 1501060 1702070 1554870 1129680 1727220 TRUE FALSE FALSE 1147902.832 1219449.721 1088709.45 1446976.531 1111972.885 1315874.479 1276194.083 1200860.044 1227601.572 1294712.87 0.886608034 0.941868849 0.840888722 1.117604192 0.858856748 1.016344635 0.985696608 0.927510703 0.948165111 1 20.30420075 VSSS(ph)PQKEGR ddPTM_HeLa_A485_30min_R1 1 VSSSPQKEGR 10 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 VS(0.019)S(0.157)S(0.824)PQKEGR 167.71 1.76E-07 793110000 1134600 1364700 948740 1378000 1731800 1831200 2411500 2835400 1144300 2056900 TRUE FALSE FALSE 1386987.856 1524289.794 1299718.406 1453276.651 1559375.911 1927078.8 1896263.325 2140013.704 1373950.514 1544152.684 0.898219373 0.987136705 0.841703298 0.941148285 1.009858628 1.24798462 1.228028383 1.38588219 0.889776333 1 20.55838398 -6.047440517 3.453117582 1.178560032 0.91899779 0.397109109 0.133411978 0.222141245 5.355672585 0.043985072 0.046127302 8.97E-07 6.047440517 -0.259562242 VSSS(ph)PQKEGR ddPTM_HeLa_A486_30min_R1 1 VSSSPQKEGR 10 1 Q7Z5J4-3;Q7Z5J4;A0A1W2PQJ7;Q7Z5J4-2 Q7Z5J4-3 RAI1 Retinoic acid-induced protein 1 1 0 VSS(0.024)S(0.975)PQKEGR 171.49 3.15E-06 57812000 202450 158230 132190 91229 229960 191060 256330 237670 169410 266970 TRUE FALSE FALSE 188259.3005 145691.2785 183377.5082 212385.7225 201116.2725 167488.9598 192193.5228 183557.7293 184094.5952 200118.9743 0.940736885 0.728023312 0.916342435 1.061297277 1.004983526 0.836946923 0.960396302 0.917243005 0.919925738 1 17.61049844 -4.985556203 24.61803963 0.953830304 0.831330717 0.299326063 0.074251303 230.9105143 393557.8477 0.019379544 0.040314541 1.03E-05 4.985556203 -0.122499587 VST(ph)PVVK ddPTM_HeLa_A486_30min_R1 2 VSTPVVK 7 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 0 VS(0.465)T(0.535)PVVK;VS(0.015)T(0.985)PVVK ; 119.21 0.010391 722120000 2642900 2685000 1281180 1316000 2507200 3061300 3623900 3449600 1908350 3859100 TRUE FALSE FALSE 2457646.358 2472230.821 1777287.207 3063714.507 2192723.597 2683627.931 2717161.89 2664201.384 2073767.315 2892756.241 0.849586399 0.854628118 0.614392316 1.059098746 0.758004966 0.927706211 0.939298601 0.920990627 0.716882842 1 21.46401333 -5.262610645 24.99871747 0.896331093 0.781044873 0.21278947 0.113973932 180.6188487 3855032.81 0.030540369 0.048350722 5.46E-06 5.262610645 -0.11528622 VSTALSCLLGLPLR ddPTM_HeLa_A485_30min_R1 2 VSTALSCLLGLPLR 14 0 A6NIC1;O00442;O00442-2 A6NIC1 RTCA RNA 3-terminal phosphate cyclase 0 0 ; ; 178.81 5.95E-10 14694300 8628.4 7898.1 8212.5 8788 10528.5 10325.2 12293.2 12121 7386.7 12748.1 FALSE FALSE TRUE 10547.75781 8821.714091 11250.6455 9268.066188 9480.245572 10865.81151 9666.657394 9148.305745 8869.142935 9570.233281 1.102142184 0.921786735 1.175587383 0.968426361 0.990597125 1.135375825 1.010075419 0.955912513 0.926742606 1 13.22433838 -7.116834962 4.303179443 0.9569185 1.044569564 0.215036311 0.074507527 0.3567089 10.82919344 0.035428482 0.019851537 7.64E-08 7.116834962 0.087651064 VSTALSCLLGLPLR ddPTM_HeLa_A486_30min_R1 2 VSTALSCLLGLPLR 14 0 A6NIC1;O00442;O00442-2 A6NIC1 RTCA RNA 3-terminal phosphate cyclase 0 0 ; ; 220.1 1.81E-21 15318700 8725.8 10033.9 9789.8 3410.9 10112.9 9231.5 10711.3 10806.8 8888.8 11108.4 FALSE FALSE TRUE 8114.16648 9238.777221 13580.67274 7940.747577 8844.445783 8092.611389 8031.219447 8346.327551 9659.288341 8326.784336 0.97446579 1.10952522 1.630962469 0.953639155 1.06216823 0.971877145 0.964504318 1.00234703 1.160026242 1 13.02354374 VSTEVDAR ddPTM_HeLa_A485_30min_R1 1 VSTEVDAR 8 0 F2Z393;P37837 F2Z393 TALDO1 Transaldolase 0 0 98.458 0.027023 12933000 12661 16470 16934 11521 18852 15447 17494 18922 15834 19618 FALSE FALSE TRUE 15477.39577 18396.02323 23198.59128 12150.36306 16975.02869 16255.78103 13756.26399 14281.34983 19011.73856 14727.59364 1.050911381 1.24908547 1.575178664 0.825006675 1.152600289 1.103763549 0.934046954 0.969700155 1.29089239 1 13.84623411 -5.271833293 24.99739497 1.041172553 1.287461216 0.319983788 0.168496518 837.5303588 2014262.327 0.047185602 0.070879138 5.35E-06 5.271833293 0.246288663 VSTGDT(ph)SPCGTEEDSSPASPMHER ddPTM_HeLa_A485_30min_R1 1 VSTGDTSPCGTEEDSSPASPMHER 24 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 VS(0.035)T(0.035)GDT(0.481)S(0.417)PCGT(0.032)EEDSSPASPMHER 68.207 0.00026033 0 62112 107670 88307 72626 141710 70687 88669 85709 79590 98288 TRUE FALSE FALSE 75928.60012 120261.0699 120975.4341 76593.37448 127600.8548 74388.06202 69724.14379 64688.73336 95562.98296 73786.61046 1.029029517 1.629849496 1.639530984 1.038038934 1.729322624 1.008151229 0.944943037 0.876700162 1.295126343 1 16.17107142 -6.297772615 23.91764285 1.012275141 1.416929663 0.389281084 0.242814123 352.8549151 232277.9061 0.082612813 0.072860627 5.04E-07 6.297772615 0.404654522 VSTTTDSPVS(ph)PAQAASPFIPLDELSSK ddPTM_HeLa_A485_30min_R1 2 VSTTTDSPVSPAQAASPFIPLDELSSK 27 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 VS(0.032)T(0.032)T(0.032)T(0.032)DS(0.159)PVS(0.711)PAQAASPFIPLDELSSK;VS(0.001)T(0.001)T(0.001)T(0.001)DS(0.04)PVS(0.954)PAQAASPFIPLDELSSK ; 137.47 1.61E-06 114359000 123629 122554 99170 164041 166230 145753 201117 193783 123081 215898 TRUE FALSE FALSE 151129.8445 136885.6242 135857.1098 173002.1445 149679.5575 153384.4017 158146.71 146257.4154 147782.2277 162078.6019 0.932447854 0.84456321 0.838217434 1.067396574 0.923499807 0.946358124 0.975740833 0.902385717 0.911793574 1 17.30633411 -5.201113039 24.99999942 0.955396955 0.869024826 0.385203403 0.051310614 264.9726431 109807.2769 0.013828529 0.023951709 6.29E-06 5.201113039 -0.08637213 VSTTTDSPVS(ph)PAQAASPFIPLDELSSK ddPTM_HeLa_A486_30min_R1 1 VSTTTDSPVSPAQAASPFIPLDELSSK 27 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 VS(0.004)T(0.004)T(0.004)T(0.012)DS(0.054)PVS(0.915)PAQAAS(0.007)PFIPLDELSSK 83.788 0.0038017 90501000 119180 121820 74059 53914 119490 130320 156360 147290 117560 158320 TRUE FALSE FALSE 110826.0974 112166.5395 102736.6282 125514.5167 104502.45 114242.4434 117237.0742 113755.2823 127750.1955 118675.6415 0.933857159 0.945152165 0.86569263 1.057626612 0.880572025 0.962644414 0.987878158 0.958539435 1.076465177 1 16.85666432 -7.225076373 1.224881338 1.028226017 0.939461965 0.282690351 0.054309855 0.632805513 1.686810303 0.043703409 0.017243889 5.96E-08 7.225076373 -0.088764052 VSTVTS(ph)PSR ddPTM_HeLa_A486_30min_R1 1 VSTVTSPSR 9 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 VS(0.021)T(0.054)VT(0.019)S(0.904)PS(0.001)R 94.465 0.0028363 283180000 551070 561570 468760 177500 634770 479250 629740 530970 468380 562990 TRUE FALSE FALSE 512442.8387 517069.148 650276.4258 413228.9704 555151.2276 420125.0077 472172.3913 410079.722 508979.5555 422013.6396 1.214280276 1.22524274 1.540889594 0.979183921 1.315481718 0.995524714 1.11885576 0.971721489 1.206073709 1 18.6869301 -5.775581277 1.264496027 1.065827732 1.295888048 0.289995579 0.146178536 0.558070965 1.87727752 0.056580256 0.080081148 1.68E-06 5.775581277 0.230060316 VSVFFGGLSIK ddPTM_HeLa_A485_30min_R1 2 VSVFFGGLSIK 11 0 O00148;O00148-2;K7EQN7;O00148-3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 0 ; ; 212.21 8.95E-20 64612000 86132 74761 70095 110213 121895 72514 108717 83327 63651 151392 FALSE FALSE TRUE 105291.7662 83503.64862 96026.0574 116233.6571 109758.7058 76310.72091 85488.72481 62890.9226 76425.17186 113652.7606 0.926433865 0.734726092 0.844907391 1.022708613 0.965737262 0.67143746 0.752192242 0.553360273 0.672444483 1 16.7942732 -6.268938196 24.808615 0.703365986 0.893660099 0.290604959 0.128612845 625.1280085 2068128.407 0.045040675 0.040494926 5.38E-07 6.268938196 0.190294113 VSVFFGGLSIK ddPTM_HeLa_A486_30min_R1 2 VSVFFGGLSIK 11 0 O00148;O00148-2;K7EQN7;O00148-3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 0 ; ; 232.79 6.44E-27 56258000 107472 99782 72062 48462 102325 106675 134145 111658 92405 119047 FALSE FALSE TRUE 99938.76779 91874.91092 99966.33629 112821.9851 89490.44436 93514.52309 100580.5022 86235.91088 100414.7398 89236.85633 1.119927033 1.029562388 1.12023597 1.264298069 1.002841741 1.047936099 1.127118394 0.966371009 1.125260839 1 16.44535207 VSVFFGGLSIKK ddPTM_HeLa_A485_30min_R1 1 VSVFFGGLSIKK 12 1 O00148;O00148-2;K7EQN7;O00148-3;A0A0D9SEM9 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 0 145.17 2.63E-05 0 13726 17443 12095 11884 18791 14883 19880 22812 8012.2 17808 FALSE FALSE TRUE 16779.30135 19482.80712 16569.44381 12533.19283 16920.10206 15662.25087 15632.4756 17217.32123 9620.175048 13368.79333 1.255109637 1.457334752 1.23941207 0.937496191 1.265641681 1.17155307 1.169325848 1.287873992 0.719599354 1 13.70658163 -1 0.141447815 0.910634299 2.48465797 0.299968508 0.167256042 98.00154326 0.923213873 0.703347537 31.25763394 0.1 1 1.574023671 VSVGAPDLSLEASEGS(ph)IKLPK ddPTM_HeLa_A485_30min_R1 4 VSVGAPDLSLEASEGSIKLPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VSVGAPDLSLEAS(0.002)EGS(0.998)IKLPK;VSVGAPDLSLEAS(0.002)EGS(0.998)IKLPK;VSVGAPDLSLEASEGS(1)IKLPK;VSVGAPDLSLEAS(0.042)EGS(0.957)IKLPK ;;; 212.65 1.74E-27 1835730000 730919 423902 259498 941760 643835 532189 1330640 1287310 739592 1996700 TRUE FALSE FALSE 893509.4099 473473.6514 355497.1088 993205.9641 579732.5268 560053.5931 1046337.894 971595.2041 888021.3305 1498959.437 0.59608645 0.315868222 0.237162594 0.662596959 0.386756648 0.373628251 0.698042834 0.648179784 0.592425191 1 20.51552991 -8.257861316 0.384243861 1.046921068 0.387480199 0.601270433 0.135590885 1.276904224 0.438786949 0.27436718 0.116901933 5.52E-09 8.257861316 -0.659440869 VSVGAPDLSLEASEGS(ph)IKLPK ddPTM_HeLa_A486_30min_R1 3 VSVGAPDLSLEASEGSIKLPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VSVGAPDLSLEASEGS(1)IKLPK;VSVGAPDLSLEASEGS(1)IKLPK;VSVGAPDLSLEASEGS(1)IKLPK ;; 275.33 6.90E-73 1694400000 1445870 1281280 358048 1057560 827074 2087910 3111430 3340050 1043833 3097400 TRUE FALSE FALSE 1344521.979 1179746.706 496693.7745 2462053.126 723334.6668 1830324.893 2332917.305 2579593.528 1134313.285 2321790.879 0.57908832 0.508119279 0.213927007 1.060411232 0.311541695 0.788324611 1.004792174 1.111036119 0.488551012 1 21.14680661 -6.486089124 8.287651828 0.908682996 0.544588505 0.313785912 0.258320427 0.379374869 79.47298713 0.08944413 0.077585043 3.27E-07 6.486089124 -0.364094492 VSVHVIEGDHR ddPTM_HeLa_A485_30min_R1 3 VSVHVIEGDHR 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ;; ;; 142.1 2.20E-06 74565000 19943.7 27662.3 27200.8 12643.67 21418.1 28080.2 15169.1 24907.4 24966.5 19717.6 FALSE FALSE TRUE 24380.10726 30897.16535 37263.50784 13334.36168 19285.63876 29550.43585 11928.09786 18798.8211 29977.04754 14802.3652 1.64704133 2.087312733 2.517402276 0.900826422 1.302875487 1.996332036 0.805823779 1.269987657 2.025152545 1 13.85354009 -5.260924922 24.99989154 1.344917201 2.084258166 0.38878551 0.433593318 49.57152425 2408853.766 0.120076941 0.192771359 5.48E-06 5.260924922 0.739340966 VSVHVIEGDHR ddPTM_HeLa_A486_30min_R1 2 VSVHVIEGDHR 11 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ; ; 117.98 0.0008594 31470000 10187.8 11104.5 15156.7 2684.87 15020.6 8213.2 8762.8 7375.2 9877.8 5974.7 FALSE FALSE TRUE 9473.68783 10224.53898 21025.78015 6250.513046 13136.57629 7199.93889 6570.254757 5696.027959 10734.01566 4478.596231 2.115325281 2.282978516 4.694725549 1.395641117 2.933190582 1.607632954 1.467034405 1.27183333 2.396736634 1 12.12883089 -6.17689658 1.526313756 1.522751486 2.79590393 0.286354351 0.86896576 0.520572973 2.429363801 0.370115902 0.358438836 6.65E-07 6.17689658 1.273152444 VSVS(ph)PGR ddPTM_HeLa_A485_30min_R1 9 VSVSPGR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.031)VS(0.969)PGR;VS(0.003)VS(0.997)PGR;VS(0.012)VS(0.988)PGR;VS(0.004)VS(0.996)PGR;VS(0.002)VS(0.998)PGR;VS(0.001)VS(0.999)PGR;VSVS(1)PGR;VS(0.018)VS(0.982)PGR;VS(0.001)VS(0.999)PGR ;;;;;;;; 93.143 0.0061081 27083730000 8690160 12032000 11815010 9499920 13293300 11003100 13113530 13908300 9735760 11800640 TRUE FALSE FALSE 10623256.11 13439037.74 16185873.86 10018876.57 11969772.38 11579205.3 10311717.19 10497267.62 11689637.73 8858957.623 1.199154185 1.51699989 1.827063019 1.130931764 1.351149073 1.307061823 1.163987641 1.184932592 1.319527446 1 23.07870553 -5.295598275 24.99951264 1.224162574 1.514665377 0.399420561 0.17127123 626.182436 458276.2282 0.0481675 0.071448267 5.06E-06 5.295598275 0.290502803 VSVS(ph)PGR ddPTM_HeLa_A486_30min_R1 8 VSVSPGR 7 0 A9Z1X7;Q8IYB3-2;E9PCT1;M0R088;Q8IYB3 A9Z1X7;M0R088;Q8IYB3 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VS(0.001)VS(0.999)PGR;VS(0.002)VS(0.998)PGR;VS(0.01)VS(0.99)PGR;VS(0.008)VS(0.992)PGR;VS(0.004)VS(0.996)PGR;VSVS(1)PGR;VS(0.003)VS(0.997)PGR;VS(0.003)VS(0.997)PGR ;;;;;;; 103.83 0.0036833 26673410000 10288340 12540800 11203230 3846312 14389090 10707060 12135750 12211840 9729940 10534660 TRUE FALSE FALSE 9567180.495 11547021.34 15541420.69 8954408.718 12584276.16 9386131.799 9099256.991 9431470.615 10573339.03 7896712.567 1.211539665 1.46225676 1.968087423 1.133941326 1.593609499 1.188612567 1.152284183 1.194354047 1.338954526 1 22.91282075 -6.276734511 23.22752318 1.185578313 1.481810519 0.307042072 0.22417944 420.1094694 637984.3508 0.078303499 0.069379918 5.29E-07 6.276734511 0.296232206 VSVT(ph)PPEESQNSDTPPRPDRLPLDEK ddPTM_HeLa_A486_30min_R1 2 VSVTPPEESQNSDTPPRPDRLPLDEK 26 2 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 VS(0.047)VT(0.898)PPEES(0.024)QNS(0.024)DT(0.007)PPRPDRLPLDEK;VS(0.047)VT(0.924)PPEES(0.015)QNS(0.015)DTPPRPDRLPLDEK ; 99.7 0.0016742 649220000 363770 373370 208209 180612 406830 415030 528460 492770 314830 550600 TRUE FALSE FALSE 338271.6015 343782.8014 288833.1008 420473.8636 355801.5879 363827.8183 396233.7185 380577.0281 342119.7179 412726.1762 0.819602974 0.832956137 0.699817742 1.01877198 0.862076622 0.881523488 0.960040195 0.922105381 0.828926629 1 18.65482542 -5.258483873 24.99582782 0.918586606 0.789008675 0.496266767 0.064671805 228.0909544 1929040.039 0.017320514 0.028391809 5.51E-06 5.258483873 -0.129577932 VSVTPPEESQNSDT(ph)PPRPDRLPLDEK ddPTM_HeLa_A485_30min_R1 2 VSVTPPEESQNSDTPPRPDRLPLDEK 26 2 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 VSVTPPEES(0.004)QNS(0.013)DT(0.984)PPRPDRLPLDEK;VSVTPPEES(0.005)QNS(0.134)DT(0.86)PPRPDRLPLDEK ; 138.1 1.90E-06 1164720000 200261 164294 156221 253042 258386 194718 260670 233046 183972 345000 TRUE FALSE FALSE 244808.3686 183506.7541 214013.6488 266865.0437 232660.1826 204913.1334 204975.725 175891.1031 220893.4929 258997.8493 0.945213905 0.70852617 0.826314386 1.03037552 0.898309323 0.791176969 0.791418638 0.679121868 0.852877711 1 17.98258059 -6.266865879 23.8049861 0.800895375 0.877301888 0.049798824 0.108133122 588.7210534 2582590.941 0.038194348 0.034700857 5.41E-07 6.266865879 0.076406514 VSVTPPEESQNSDT(ph)PPRPDRLPLDEK ddPTM_HeLa_A486_30min_R1 2 VSVTPPEESQNSDTPPRPDRLPLDEK 26 2 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 VSVTPPEES(0.004)QNS(0.04)DT(0.957)PPRPDRLPLDEK;VSVTPPEESQNS(0.002)DT(0.998)PPRPDRLPLDEK ; 157.73 8.95E-10 755570000 397510 391010 229710 181208 408210 425500 525070 473870 297100 544520 TRUE FALSE FALSE 369646.6017 360024.9436 318659.8638 421861.3817 357008.4954 373006.1362 393691.9324 365980.1455 322852.8672 408168.6478 0.905622232 0.88204948 0.780706371 1.033546756 0.87465928 0.913852983 0.964532515 0.896639532 0.790979094 1 18.63880584 -5.237989209 24.99515466 0.919679808 0.858718399 0.164357027 0.070295452 1652.840619 1761733.318 0.018820837 0.03257496 5.78E-06 5.237989209 -0.060961409 VSVYLQNWSHVLSYVSK ddPTM_HeLa_A485_30min_R1 2 VSVYLQNWSHVLSYVSK 17 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;Q13098-6;J3KSA5 C9JFE4 GPS1 COP9 signalosome complex subunit 1 0 0 ; ; 179.46 7.88E-14 14636300 16826.4 16048.7 17594 17567.1 30630 14076.7 19744.9 17702.2 11606.7 23708.8 FALSE FALSE TRUE 20569.37463 17925.45586 24102.75275 18526.74619 27580.36965 14813.73425 15526.24081 13360.70769 13936.05823 17798.63249 1.155671631 1.007125456 1.354191271 1.040908407 1.549578018 0.832296203 0.872327738 0.750659226 0.782984773 1 14.11947878 -6.317425502 24.09971569 0.833611407 1.206924989 0.583595635 0.157428303 139.0864408 59870.40036 0.053210319 0.04692712 4.81E-07 6.317425502 0.373313581 VSVYLQNWSHVLSYVSK ddPTM_HeLa_A486_30min_R1 1 VSVYLQNWSHVLSYVSK 17 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;Q13098-6;J3KSA5 C9JFE4 GPS1 COP9 signalosome complex subunit 1 0 0 197.49 1.38E-18 6708200 6899.2 7275.9 6976.6 2696.4 9793.5 8310.8 9789.6 9129.4 7744.6 6660.2 FALSE FALSE TRUE 6415.601708 6699.331186 9678.12636 6277.355469 8565.107909 7285.497994 7340.138536 7050.834913 8415.908164 4992.442569 1.285062696 1.341894492 1.938555372 1.257371593 1.71561471 1.459305319 1.47024997 1.412301657 1.68572959 1 12.28553012 -10.52726125 8.141330514 0.999927942 1.508633803 0.359255366 0.2032589 0.000253089 1.47E-05 0.187360564 0.045435258 2.97E-11 10.52726125 0.508705861 VSWADNS(ph)VPK ddPTM_HeLa_A486_30min_R1 1 VSWADNSVPK 10 0 J3QS93;E7EQM8;P43146 J3QS93 DCC Netrin receptor DCC 1 0 VS(0.005)WADNS(0.995)VPK 63.624 0.022989 73262000 104750 224860 134450 76735 190900 220490 233670 201810 161680 204090 TRUE FALSE FALSE 97407.56593 207041.2747 186512.6407 178642.958 166955.5419 193288.1856 175203.2945 155862.2685 175694.5526 152984.5356 0.636715113 1.353347735 1.219160093 1.167719059 1.091322997 1.263449177 1.145235326 1.018810613 1.148446488 1 17.2230263 -9.513338411 7.434389784 0.999999867 1.129166612 0.030593563 0.182927057 0 0 0.167693518 0.040671652 3.07E-10 9.513338411 0.129166745 VSYFPTVPGVYIVSTK ddPTM_HeLa_A485_30min_R1 2 VSYFPTVPGVYIVSTK 16 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5;H7C5L4 O75369-8 FLNB Filamin-B 0 0 ; ; 231.06 4.18E-32 63777000 67174 73308 65123 68101 96919 73261 99686 98090 73041 112057 FALSE FALSE TRUE 82116.62455 81880.73291 89214.70769 71821.18519 87269.40406 77096.83268 78387.27174 74033.2737 87699.65873 84123.25216 0.976146576 0.973342457 1.06052376 0.853761396 1.037399314 0.916474705 0.931814566 0.880057199 1.042513889 1 16.360217 -5.234457973 24.97850326 0.94799201 1.00033806 0.122160726 0.062704703 1533.738335 1419883.193 0.016112578 0.027899244 5.83E-06 5.234457973 0.052346049 VSYFPTVPGVYIVSTK ddPTM_HeLa_A486_30min_R1 2 VSYFPTVPGVYIVSTK 16 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5;H7C5L4 O75369-8 FLNB Filamin-B 0 0 ; ; 297.64 1.96E-67 69058000 99071 108292 75269 36990 117206 109376 127260 126665 96644 123720 FALSE FALSE TRUE 92126.6345 99710.54753 104415.1726 86114.58937 102504.9306 95882.30117 95418.20198 97826.14458 105021.1797 92739.70672 0.993389323 1.075165655 1.125895005 0.928562235 1.105297118 1.033886181 1.02888186 1.054846387 1.1324295 1 16.50089954 -7.533735294 24.66846221 1.075355798 1.043777371 0.021337864 0.06048331 692.6119613 1573722.248 0.038668743 0.014653682 2.93E-08 7.533735294 -0.031578427 VT(ph)GPRLSGGHSLHETSTVLVETVTK ddPTM_HeLa_A485_30min_R1 1 VTGPRLSGGHSLHETSTVLVETVTK 25 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 VT(0.167)GPRLS(0.167)GGHS(0.167)LHET(0.167)S(0.167)T(0.167)VLVETVTK 69.72 0.011661 414710000 145980 273790 259690 101910 446170 255660 372080 610620 263740 170880 TRUE FALSE FALSE 178452.7474 305807.3588 355760.1376 107477.0853 401747.7482 269045.9623 292582.0684 460864.4876 316670.1988 128282.7608 1.391089077 2.383853894 2.773249775 0.83781394 3.131736062 2.097288526 2.280759055 3.59256758 2.46853277 1 16.96896778 VT(ph)KSPAPVHR ddPTM_HeLa_A485_30min_R1 1 VTKSPAPVHR 10 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 VT(0.5)KS(0.5)PAPVHR 61.641 0.030015 60103000 97698 121820 88133 127200 140510 139950 167240 184680 100400 188050 TRUE FALSE FALSE 119430.583 136065.7893 120737.0642 134148.6139 126520.331 147277.5656 131507.8078 139386.9404 120549.3591 141172.5958 0.845989849 0.963825794 0.855244345 0.950245429 0.896210276 1.043244723 0.931539206 0.987351261 0.85391473 1 17.10710054 -5.781289609 1.967270372 0.958810409 0.898995384 0.184693168 0.058566727 0.586898315 4.678931543 0.01927875 0.024751996 1.65E-06 5.781289609 -0.059815025 VT(ph)PTKESYTEEIVSEAESHVSGISR ddPTM_HeLa_A485_30min_R1 2 VTPTKESYTEEIVSEAESHVSGISR 25 1 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 VT(0.586)PT(0.126)KES(0.126)Y(0.036)T(0.126)EEIVSEAESHVSGISR;VT(0.775)PT(0.212)KES(0.01)Y(0.002)T(0.001)EEIVSEAESHVSGISR ; 144.45 5.66E-09 166782000 17079.9 18568.8 23741.7 14514.2 45230 20205.7 30636 22762.3 24538.3 32069 TRUE FALSE FALSE 20879.26483 20740.25963 32524.7428 15307.07399 40726.74239 21263.63921 24090.36833 17179.81024 29462.91173 24074.78849 0.867266802 0.861492912 1.350987687 0.635813436 1.691676021 0.883232649 1.000647143 0.71360171 1.223807709 1 14.5552355 -9.948019418 9.185805385 0.999999818 1.024206758 0.000622696 0.301827948 2.07E-10 0 0.27655524 0.067074498 1.13E-10 9.948019418 0.02420694 VT(ph)PTKESYTEEIVSEAESHVSGISR ddPTM_HeLa_A486_30min_R1 2 VTPTKESYTEEIVSEAESHVSGISR 25 1 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 VT(0.91)PT(0.035)KES(0.035)Y(0.014)T(0.006)EEIVSEAESHVSGISR;VT(0.949)PT(0.049)KES(0.001)YTEEIVSEAESHVSGISR ; 177.39 6.76E-15 206861000 238660 265980 190526 17344.6 294490 186614 239490 230570 257910 80271 TRUE FALSE FALSE 221931.1664 244902.7761 264302.7697 40379.10535 257552.3182 163591.462 179567.0689 178074.2443 280265.8465 60170.61912 3.688364349 4.070138876 4.392555262 0.67107678 4.280366763 2.718793066 2.984298177 2.959488317 4.65785213 1 15.87677158 -10.66297484 2.755060488 0.724922866 3.333691719 0.294506834 1.103116338 69343975.95 61302400.41 134107579.1 0.270707192 2.17E-11 10.66297484 2.608768852 VT(ph)S(ph)PYWEER ddPTM_HeLa_A485_30min_R1 2 VTSPYWEER 9 0 J3KRR7;Q9NQC7-2;Q9NQC7;H3BPZ5;H3BTB8;H3BSW9;H3BS09 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 2 0 VT(0.951)S(0.951)PY(0.099)WEER;VT(0.963)S(0.963)PY(0.074)WEER ; 74.267 0.031336 315100000 7048.7 12395.4 16131.8 12171.1 11709.3 14192.2 15199.5 21195 11754.6 15396.8 TRUE FALSE FALSE 8616.658997 13844.9342 22099.62412 12835.97637 10543.48098 14935.28165 11952.00266 15996.89302 14113.6404 11558.66112 0.745472067 1.197797397 1.911953633 1.110507198 0.912171477 1.292129036 1.034030026 1.383974567 1.221044571 1 13.49668667 VT(ph)SLRSPGASVSSSLTSLCSSSSDPAPSDR ddPTM_HeLa_A485_30min_R1 1 VTSLRSPGASVSSSLTSLCSSSSDPAPSDR 30 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VT(0.49)S(0.49)LRS(0.02)PGASVSSSLTSLCSSSSDPAPSDR 135.75 1.67E-06 209090000 24930 42101 41802 24697 69075 50220 72695 109860 56755 58273 TRUE FALSE FALSE 30475.59249 47024.34572 57266.29933 26046.13457 62197.65046 52849.44155 57163.11939 82916.66275 68145.20791 43746.61354 0.696638895 1.074925392 1.309045311 0.595386305 1.421770634 1.208080747 1.30668673 1.895384718 1.557725328 1 15.41688372 -6.295498578 1.249299308 1.516238798 0.967139982 0.324074268 0.302991089 0.497540629 1.585654666 0.150266666 0.13141166 5.06E-07 6.295498578 -0.549098815 VT(ph)SLRSPGASVSSSLTSLCSSSSDPAPSDR ddPTM_HeLa_A486_30min_R1 1 VTSLRSPGASVSSSLTSLCSSSSDPAPSDR 30 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VT(0.449)S(0.396)LRS(0.151)PGAS(0.001)VS(0.001)S(0.001)S(0.001)LTSLCSSSSDPAPSDR 111.23 0.0001437 191120000 45935 61594 54072 25609 98445 52001 76066 90039 43066 57537 TRUE FALSE FALSE 42715.19371 56713.06712 75010.1265 59619.04621 86097.11014 45585.64533 57033.48226 69539.08524 46798.99556 43129.3607 0.990397099 1.314952649 1.739189389 1.382330859 1.996252871 1.056951566 1.322381814 1.612337492 1.085084379 1 15.39638271 VT(ph)SPTTYVLDEDEPR ddPTM_HeLa_A485_30min_R1 1 VTSPTTYVLDEDEPR 15 0 J3KNS1;Q9UPW5-2;Q9UPW5;Q9UPW5-3 J3KNS1 AGTPBP1 Cytosolic carboxypeptidase 1 1 0 VT(0.5)S(0.5)PTTYVLDEDEPR 182.57 4.22E-17 32706000 38452 48778 43490 48057 60921 46416 50295 53319 42196 55492 TRUE FALSE FALSE 47005.51474 54482.16279 59578.76077 50682.23222 54855.49133 48846.26999 39549.06238 40242.43165 50664.35016 41658.86565 1.128343607 1.307816762 1.430158019 1.216601351 1.316778325 1.172530006 0.949355239 0.965999218 1.216172101 1 15.34633594 -6.536724402 4.370108671 1.030940968 1.284200987 0.578387075 0.099212568 0.145909672 6.814476552 0.038664416 0.030793924 2.91E-07 6.536724402 0.253260018 VTAAMVLTSLST(ph)SPLVR ddPTM_HeLa_A486_30min_R1 1 VTAAMVLTSLSTSPLVR 17 0 Q6ZNC4;E5RGL7 Q6ZNC4 ZNF704 Zinc finger protein 704 1 0 VTAAMVLT(0.066)S(0.057)LS(0.049)T(0.414)S(0.414)PLVR 70.98 0.0063198 0 45006 47454 43172 23330 44159 45188 46802 47525 43597 44549 TRUE FALSE FALSE 41851.31181 43693.57222 59889.35459 54313.41903 38620.16645 39613.164 35091.64458 36704.59496 47376.02306 33393.64043 1.253271918 1.30843992 1.79343593 1.626459958 1.156512616 1.186248743 1.050848129 1.099149254 1.418713936 1 15.02728576 -5.774629857 24.85566445 1.153533115 1.503335629 0.478508923 0.175587104 197.2781434 371742.5728 0.057714927 0.065830545 1.68E-06 5.774629857 0.349802513 VTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_A485_30min_R1 2 VTAEADSSSPTGILATSESK 20 0 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 VTAEADS(0.002)S(0.017)S(0.98)PTGILATSESK;VTAEADS(0.007)S(0.176)S(0.814)PT(0.004)GILATSESK ; 173.37 8.65E-14 190260000 304190 294530 230900 403150 453950 298180 477780 467560 334440 589960 TRUE FALSE FALSE 371856.0161 328972.7214 316319.5186 425173.0637 408753.1441 313792.2437 375698.3999 352890.1769 401559.0403 442893.8294 0.839605322 0.742780097 0.714210715 0.959988682 0.922914516 0.708504438 0.848280953 0.796782781 0.906671111 1 18.75660137 -13.99999969 0.182724543 1.74451739 0.787966564 0.317502792 0.080801392 175.721695 1.699259791 47.31086662 0.256562328 1.00E-14 13.99999969 -0.956550826 VTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_A486_30min_R1 4 VTAEADSSSPTGILATSESK 20 0 A0MZ66-8;A0MZ66-4;A0MZ66-5;A0MZ66-6;A0MZ66;A0MZ66-3;A0MZ66-7 A0MZ66-8 KIAA1598 Shootin-1 1 0 VTAEADS(0.013)S(0.147)S(0.84)PTGILATSESK;VTAEADS(0.002)S(0.016)S(0.981)PT(0.001)GILATSESK;VTAEADS(0.027)S(0.155)S(0.763)PT(0.054)GILATSESK;VTAEADSS(0.001)S(0.997)PT(0.002)GILATSESK ;;; 292.34 1.03E-86 732430000 573150 678566 441553 281000 715510 725210 807220 839510 577671 820450 TRUE FALSE FALSE 532975.1447 624793.9589 612534.1468 654182.201 625764.0639 635740.9636 605245.0181 648371.8994 627743.9874 615003.9798 0.866620644 1.015918562 0.995984037 1.063704012 1.017495959 1.033718455 0.984131872 1.054256429 1.020715326 1 19.23023622 -4.252473654 4.267197935 1.022840526 0.853400759 0.793334076 0.023582318 0.09420337 3.939473672 0.00569382 0.049085827 5.59E-05 4.252473654 -0.169439767 VTAGWPSEPGQGDLNPES(ph)PAALGQDLLEPR ddPTM_HeLa_A485_30min_R1 1 VTAGWPSEPGQGDLNPESPAALGQDLLEPR 30 0 A0A087X055;Q92766-5;Q92766-3;Q92766;Q92766-2;Q92766-4 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 VTAGWPS(0.001)EPGQGDLNPES(0.999)PAALGQDLLEPR 91.615 0.00049609 10858000 8979 16323 12763 9504.2 17202 9825.8 11136 15875 10748 20101 TRUE FALSE FALSE 10976.34757 18231.83286 17484.56481 10023.39038 15489.30848 10340.26369 8756.702627 11981.63136 12905.02501 15090.19063 0.727382963 1.208191023 1.158670903 0.664232191 1.026448827 0.68523082 0.580291054 0.794001325 0.855192975 1 13.88132341 -5.259606698 24.99711629 0.78759015 1.049092571 0.257286233 0.17783898 201.4996613 2748364.854 0.048750059 0.079230065 5.50E-06 5.259606698 0.261502421 VTAIHIDPATHR ddPTM_HeLa_A485_30min_R1 3 VTAIHIDPATHR 12 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ;; ;; 156.14 5.04E-06 125713000 116488 172577 158995 132530 181780 152130 173692 186868 144173 190806 FALSE FALSE TRUE 142400.3537 192758.3789 217813.8668 139769.7783 163681.3449 160095.2916 136581.2853 141038.33 173107.1987 143241.5757 0.99412725 1.345687367 1.520605074 0.975762642 1.14269439 1.117659386 0.953503091 0.984618672 1.208498285 1 17.12809077 -5.286851948 24.98725952 1.056111866 1.292694716 0.356945297 0.142704088 791.7702438 778517.3506 0.040574153 0.060206959 5.17E-06 5.286851948 0.23658285 VTAIHIDPATHR ddPTM_HeLa_A486_30min_R1 3 VTAIHIDPATHR 12 0 P49327;A0A0U1RQF0 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ;; ;; 156.14 9.85E-08 138057000 108697.4 127696.8 95416.7 35990.6 161661 112150 110883.9 124777.2 106587.2 126553.1 FALSE FALSE TRUE 101078.2736 117577.6405 132364.6016 83787.93566 141383.97 98314.07326 83139.57541 96368.15543 115826.2643 94863.38004 1.065514148 1.239441821 1.39531821 0.883248474 1.490395661 1.036375398 0.8764138 1.015862553 1.220979732 1 16.53356365 -6.48237359 24.98927014 1.019172635 1.213326751 0.219431229 0.174027308 761.5369477 469823.4213 0.059355601 0.052339256 3.29E-07 6.48237359 0.194154116 VTAINARGSGKPSRPSK ddPTM_HeLa_A485_30min_R1 1 VTAINARGSGKPSRPSK 17 3 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 0 0 59.261 0.025426 24682000 13396 17097 14185 14463 19595 17610 20396 22685 14818 24730 FALSE FALSE TRUE 16375.89398 19096.34543 19432.62179 15253.07707 17644.053 18532.03237 16038.22798 17121.46818 17791.83668 18565.26612 0.8820716 1.02860607 1.046719269 0.821592159 0.950379751 0.998209896 0.863883549 0.922231228 0.958339976 1 14.18031838 -5.222314745 24.99839225 0.928275464 0.990079656 0.126698726 0.0658407 1036.024497 661958.9091 0.017613578 0.030507111 5.99E-06 5.222314745 0.061804192 VTAINARGSGKPSRPSK ddPTM_HeLa_A486_30min_R1 1 VTAINARGSGKPSRPSK 17 3 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 0 0 71.08 0.011874 19777000 28705 30062 18400 10424 30312 29226 35448 33517 27465 37337 FALSE FALSE TRUE 26692.92773 27679.77764 25524.97277 24267.5988 26509.98631 25620.39327 26578.53547 25885.91077 29845.68831 27987.57218 0.953742167 0.989002457 0.912010967 0.867084813 0.947205643 0.915420355 0.949654915 0.924907334 1.066390758 1 14.77249872 -7.752247152 24.99952584 1.033195383 0.931915492 0.587691441 0.033775857 120.5887002 327963.717 0.02442341 0.008945733 1.77E-08 7.752247152 -0.101279891 VTANNDK(ac)NR ddPTM_HeLa_A485_30min_R1 1 VTANNDKNR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 1 VTANNDK(1)NR 191.67 1.96E-08 19697000 7420.6 8483.4 8381.5 7335.1 10395 7305 9814.9 11281 8951.8 10110 FALSE TRUE FALSE 9071.286869 9475.459834 11482.16563 7735.79794 9360.037301 7687.478504 7717.866435 8514.317062 10748.34415 7589.763061 1.195200271 1.248452654 1.512849023 1.019241033 1.233244994 1.012874637 1.016878442 1.121815924 1.416163333 1 12.88983913 -5.281821846 24.9400176 1.118561214 1.311795897 0.293491422 0.143244404 1009.670187 1235432.032 0.04059061 0.060288867 5.23E-06 5.281821846 0.193234682 VTANNDK(ac)NR ddPTM_HeLa_A486_30min_R1 1 VTANNDKNR 9 1 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 1 VTANNDK(1)NR 125.97 0.0067829 15039000 4881.3 5724 5629.7 1243.7 6354.1 5166 5711.7 6362.8 5344.9 5587.5 FALSE TRUE FALSE 4539.146077 5270.409394 7809.670609 2895.396453 5557.109528 4528.671444 4282.572248 4914.129339 5808.200236 4188.353631 1.083754257 1.258348711 1.86461586 0.691297036 1.326800461 1.081253362 1.022495382 1.173284248 1.3867502 1 12.03216754 -5.268767859 24.99795937 1.110394839 1.387850521 0.226529959 0.25692701 908.8336306 3100095.488 0.07114705 0.10796978 5.39E-06 5.268767859 0.277455682 VTDALPEPEPPGAMAAS(ph)EDEEEEEEALEAMQSR ddPTM_HeLa_A485_30min_R1 6 VTDALPEPEPPGAMAASEDEEEEEEALEAMQSR 33 0 Q9Y3E7-2;Q9Y3E7-4;Q9Y3E7;Q9Y3E7-3 Q9Y3E7-2 CHMP3 Charged multivesicular body protein 3 1 0 VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR ;;;;; 288.85 3.35E-79 1396429000 848325 1097345 1141362 904151 1410607 1080425 1320080 1466582 1104863 1238751 TRUE FALSE FALSE 1037031.97 1225669.952 1563599.3 953542.4797 1270162.014 1136994.382 1038034.124 1106900.465 1326598.87 929953.1732 1.115144288 1.317991042 1.681374229 1.025366123 1.365834378 1.222636166 1.116221928 1.190275486 1.426522225 1 19.82679855 -5.303939755 24.99992661 1.205647431 1.366153355 0.17000175 0.179568689 907.3503188 533727.4507 0.050014109 0.074183606 4.97E-06 5.303939755 0.160505925 VTDALPEPEPPGAMAAS(ph)EDEEEEEEALEAMQSR ddPTM_HeLa_A486_30min_R1 4 VTDALPEPEPPGAMAASEDEEEEEEALEAMQSR 33 0 Q9Y3E7-2;Q9Y3E7-4;Q9Y3E7;Q9Y3E7-3 Q9Y3E7-2 CHMP3 Charged multivesicular body protein 3 1 0 VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(0.999)EDEEEEEEALEAMQS(0.001)R;VTDALPEPEPPGAMAAS(0.973)EDEEEEEEALEAMQS(0.027)R ;;; 217.86 4.39E-39 641068000 255773 299626 270621 102884 344045 273407 300826 314185 259810 290815 TRUE FALSE FALSE 237844.6335 275882.5445 375412.6987 239519.1515 300891.668 239676.8241 225556.153 242651.9341 282330.54 217993.0311 1.091065307 1.265556716 1.722131651 1.098746828 1.380281133 1.09947012 1.034694329 1.11311785 1.295135622 1 17.73392249 -6.270068884 23.9435266 1.110941601 1.319987783 0.241918699 0.179403525 544.6543255 1511198.562 0.063269209 0.056714865 5.37E-07 6.270068884 0.209046182 VTDAPNKS(ph)EISK ddPTM_HeLa_A486_30min_R1 1 VTDAPNKSEISK 12 1 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VTDAPNKS(0.866)EIS(0.134)K 44.734 0.03255 383110000 478030 426500 194270 217660 400160 603240 637110 589590 389000 986680 TRUE FALSE FALSE 444522.5655 392702.5867 269496.5467 506723.4799 349968.2015 528818.3821 477698.3393 455353.2277 422718.8332 739608.9058 0.601023814 0.530959787 0.364377098 0.685123551 0.47318008 0.714997315 0.645879647 0.615667583 0.571543731 1 19.49640307 -14 0.192801962 2.847613327 0.503191356 0.650130197 0.094619104 84.16085784 0.826047145 59.69464028 0.247211437 1.00E-14 14 -2.344421971 VTDKVLTANSNPS(ph)SPSAAK ddPTM_HeLa_A485_30min_R1 1 VTDKVLTANSNPSSPSAAK 19 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VTDKVLTANSNPS(0.614)S(0.336)PS(0.05)AAK 114.2 1.95E-05 563450000 306480 403530 268110 327640 496290 536160 711930 970880 275790 413760 TRUE FALSE FALSE 374655.4187 450719.3233 367295.046 345538.1436 446877.625 564232.5085 559820.3396 732770.1577 331138.5233 310617.2467 1.206164251 1.4510441 1.182468295 1.112424205 1.438676151 1.816488024 1.802283503 2.3590775 1.066066121 1 18.24477841 -6.041404158 4.536483699 1.702727215 1.249985105 0.154484324 0.376827203 0.304757413 14.17730018 0.120684091 0.125439063 9.09E-07 6.041404158 -0.45274211 VTDKVLTANSNPSS(ph)PSAAK ddPTM_HeLa_A486_30min_R1 2 VTDKVLTANSNPSSPSAAK 19 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VTDKVLTANSNPS(0.116)S(0.884)PSAAK;VTDKVLTANSNPS(0.179)S(0.821)PSAAK ; 159.51 3.16E-10 653110000 704330 570940 323100 341760 709200 623570 887370 917520 401660 868400 TRUE FALSE FALSE 654960.1042 525696.6351 448212.9729 795634.5516 620245.523 546640.2734 665340.6404 708620.7253 436476.2122 650946.9877 1.006165044 0.807587476 0.688555261 1.222272423 0.952835691 0.839761584 1.022111866 1.088599746 0.670524974 1 19.31218053 -5.224818635 24.98684004 0.970484722 0.831451163 0.140700371 0.154846488 1163.940452 794171.2794 0.041451662 0.071793982 5.96E-06 5.224818635 -0.139033559 VTEHGT(ph)PKPFR ddPTM_HeLa_A485_30min_R1 4 VTEHGTPKPFR 11 1 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 VTEHGT(1)PKPFR;VTEHGT(1)PKPFR;VTEHGT(1)PKPFR;VTEHGT(1)PKPFR ;;; 232.13 1.13E-18 3460300000 1886580 1701310 1318920 2253150 2196980 1925630 2797470 2702240 1558890 2858000 TRUE FALSE FALSE 2306243.212 1900263.405 1806843.393 2376233.879 1978240.957 2026453.009 2199767.681 2039511.403 1871744.924 2145553.198 1.074894444 0.885675269 0.842134045 1.107515713 0.922019067 0.944489753 1.025268301 0.950576012 0.872383368 1 21.03291824 -4.23976355 23.71486276 0.951318361 1.074894703 0.20139104 0.074567221 4773.340269 5222205.218 0.01854233 0.804621292 5.76E-05 4.23976355 0.123576342 VTEHGT(ph)PKPFR ddPTM_HeLa_A486_30min_R1 4 VTEHGTPKPFR 11 1 Q9NZN5-2;E9PMR6;Q9NZN5 Q9NZN5-2 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 VTEHGT(1)PKPFR;VTEHGT(1)PKPFR;VT(0.004)EHGT(0.996)PKPFR;VTEHGT(1)PKPFR ;;; 194.98 2.69E-11 2665780000 1475300 1446840 902130 593940 1501180 1575330 1973910 1805620 1176890 1765160 TRUE FALSE FALSE 1371889.088 1332187.129 1251458.896 1382722.336 1312888.006 1380981.801 1480016.84 1394519.742 1278903.773 1323152.447 1.036833731 1.006828149 0.945816107 1.045021184 0.992242436 1.043705738 1.11855353 1.053937319 0.966558144 1 20.33554786 -6.274953452 22.00359187 1.04504721 1.004327241 0.093865029 0.044679208 316.9147163 515996.2795 0.016082895 0.014294468 5.31E-07 6.274953452 -0.040719969 VTENLASLT(ph)PK ddPTM_HeLa_A486_30min_R1 1 VTENLASLTPK 11 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 VTENLAS(0.001)LT(0.999)PK 92.856 0.011603 126330000 101810 108860 78220 57510 134610 122780 139070 147890 91861 168190 TRUE FALSE FALSE 94673.64475 100233.5371 108508.8788 133886.1864 117725.9586 107632.6519 104273.2151 114218.6754 99823.58544 126074.1293 0.750936336 0.795036521 0.860675219 1.061963998 0.933783634 0.853725126 0.827078606 0.90596442 0.791784849 1 16.94391274 -4.785262434 3.428772294 0.905129701 0.765684691 0.340760785 0.07554232 0.275133387 6.65664317 0.021172663 0.056569913 1.64E-05 4.785262434 -0.13944501 VTFGEDLS(ph)PEVFDESLPANTPLRK ddPTM_HeLa_A486_30min_R1 2 VTFGEDLSPEVFDESLPANTPLRK 24 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 VTFGEDLS(1)PEVFDESLPANTPLRK;VTFGEDLS(1)PEVFDESLPANTPLRK ; 173.11 1.23E-14 174928000 110889 126822 78373 54443 150853 120990 141994 156364 107553 163469 TRUE FALSE FALSE 103116.2537 116772.1628 108721.1245 126746.0554 131931.6101 106063.4839 106465.5993 120763.3306 116875.7806 122535.2984 0.841522852 0.952967548 0.887263718 1.034363625 1.076682489 0.865574943 0.868856572 0.985539124 0.953813164 1 16.90283788 -3.645120637 1.297246403 0.959809139 0.503758388 0.221825331 0.066163813 10.32342877 4.873502911 0.020586429 9.240650272 0.000226402 3.645120637 -0.456050751 VTFLIGDS(ph)MSPDSDTELR ddPTM_HeLa_A486_30min_R1 1 VTFLIGDSMSPDSDTELR 18 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 VTFLIGDS(0.557)MS(0.443)PDSDTELR 108.34 1.11E-05 0 32592 38905 35599 14628 49934 35973 39400 41924 36161 37221 TRUE FALSE FALSE 30307.46911 35822.02611 49383.88617 34054.72326 43670.8121 31535.01701 29541.70327 32378.82039 39295.4646 27900.61933 1.086265102 1.283915087 1.769992472 1.220572305 1.565227337 1.130262258 1.058818907 1.160505436 1.408408327 1 14.76800953 -6.287530212 24.49418631 1.155831783 1.391799835 0.251267417 0.201390629 878.3725342 824616.5301 0.071396354 0.062987198 5.16E-07 6.287530212 0.235968051 VTFLIGDSMS(ph)PDSDTELR ddPTM_HeLa_A485_30min_R1 1 VTFLIGDSMSPDSDTELR 18 0 Q8TF40-3;A0A087WX11;J3KNG8;Q8TF40 Q8TF40-3 FNIP1 Folliculin-interacting protein 1 1 0 VTFLIGDS(0.179)MS(0.821)PDSDTELR 131.4 7.43E-05 36193000 27800 42151 41275 33913 54259 37177 46638 56301 38293 43541 TRUE FALSE FALSE 33984.01409 47080.19279 56544.3401 35765.58132 48856.78345 39123.53023 36673.4103 42493.09147 45978.05386 32687.03001 1.03967886 1.440332535 1.729870841 1.094182656 1.494684082 1.196912972 1.121956026 1.299998546 1.406614606 1 14.99643068 -6.29126254 24.13089684 1.218650035 1.370035194 0.118322508 0.208511159 1093.554386 884826.655 0.073332509 0.064685054 5.11E-07 6.29126254 0.151385159 VTFQT(ph)PLRDPQTHR ddPTM_HeLa_A485_30min_R1 4 VTFQTPLRDPQTHR 14 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 VTFQT(1)PLRDPQTHR;VTFQT(1)PLRDPQTHR;VT(0.018)FQT(0.982)PLRDPQTHR;VTFQT(1)PLRDPQTHR ;;; 160.45 9.48E-12 1723100000 678771 855356 825252 710011 1179030 833891 923508 1058580 728185 888453 TRUE FALSE FALSE 829761.2672 955382.4436 1130547.056 748797.1031 1061641.633 877552.2433 726192.9714 798961.5952 874325.0502 666978.0179 1.244060891 1.432404694 1.695028961 1.122671337 1.591719075 1.315713891 1.088780967 1.197882949 1.310875361 1 19.34727969 -6.552790539 6.269787461 1.168951973 1.420806706 0.359990162 0.167554988 0.20513651 25.04884666 0.062169724 0.048638938 2.80E-07 6.552790539 0.251854733 VTFQT(ph)PLRDPQTHR ddPTM_HeLa_A486_30min_R1 5 VTFQTPLRDPQTHR 14 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 VTFQT(1)PLRDPQTHR;VT(0.088)FQT(0.912)PLRDPQTHR;VTFQT(1)PLRDPQTHR;VTFQT(1)PLRDPQTHR;VT(0.002)FQT(0.998)PLRDPQTHR ;;;; 169.58 4.66E-12 3372240000 2074310 2350080 1952150 732910 2823400 2121840 2398030 2405130 1787310 2173210 TRUE FALSE FALSE 1928911.581 2163851.102 2708074.76 1706251.519 2469262.845 1860068.954 1798017.53 1857534.403 1942235.47 1629024.071 1.184090288 1.328311313 1.662390881 1.047407187 1.515792731 1.141830245 1.103739081 1.140274374 1.19226935 1 20.63557649 -6.398798033 8.235602832 1.121141234 1.34707183 0.337068599 0.16280382 0.361544704 22.6559248 0.055668765 0.049015338 3.99E-07 6.398798033 0.225930595 VTFSVS(ph)PIEATEK ddPTM_HeLa_A485_30min_R1 2 VTFSVSPIEATEK 13 0 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTFSVS(1)PIEATEK;VTFSVS(1)PIEATEK ; 255.39 3.38E-41 108440000 222040 219440 216870 298640 343300 239250 331950 270260 237450 430800 TRUE FALSE FALSE 271432.032 245101.5991 297099.2377 314953.947 309119.8466 251776.76 261026.1707 203978.3112 285104.037 323409.4883 0.839282834 0.757867682 0.918647252 0.973854999 0.955815639 0.778507648 0.807107337 0.630712204 0.881557429 1 18.30300248 -6.283194297 24.44689335 0.795717079 0.888154181 0.078093675 0.104387789 1212.302235 1362308.7 0.037263544 0.032895219 5.21E-07 6.283194297 0.092437102 VTFSVS(ph)PIEATEK ddPTM_HeLa_A486_30min_R1 3 VTFSVSPIEATEK 13 0 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTFS(0.001)VS(0.999)PIEATEK;VTFSVS(1)PIEATEK;VTFSVS(1)PIEATEK ;; 263.98 1.03E-53 217315000 552368 601768 343316 219149 571860 595732 712132 647270 487399 711086 TRUE FALSE FALSE 513649.8556 554081.7121 476257.1495 510189.9472 500131.9864 522236.6428 533949.0414 499900.7508 529647.1378 533025.4372 0.963649799 1.039503321 0.893497976 0.957158724 0.938289154 0.979759325 1.001732758 0.937855337 0.99366203 1 19.02384486 -6.438741604 24.4947708 0.979935767 0.959225187 0.091896121 0.037501553 226.9114152 66056.44463 0.013405861 0.011822852 3.64E-07 6.438741604 -0.02071058 VTGGAASK(ac)LSK ddPTM_HeLa_A485_30min_R1 2 VTGGAASKLSK 11 1 F2Z388;P42766 F2Z388 RPL35 60S ribosomal protein L35 0 1 ; VTGGAASK(1)LSK;VTGGAASK(1)LSK 158.56 5.13E-05 167889000 459750 478580 658820 644680 927230 600110 818700 857830 655120 914950 FALSE TRUE FALSE 562019.8014 534545.7679 902544.9338 679897.236 834911.7255 631530.8317 643778.0568 647445.8475 786596.5749 686869.8034 0.818233381 0.778234485 1.313997106 0.989848779 1.215531272 0.919433099 0.937263589 0.942603452 1.145190211 1 19.38967714 -4.689095297 24.99994367 1.049873641 0.798229008 0.410320053 0.124250788 43.26375801 14949.02948 0.031524796 0.083406754 2.05E-05 4.689095297 -0.251644633 VTGGAASK(ac)LSK ddPTM_HeLa_A486_30min_R1 2 VTGGAASKLSK 11 1 F2Z388;P42766 F2Z388 RPL35 60S ribosomal protein L35 0 1 ; VTGGAASK(1)LSK;VTGGAASK(1)LSK 197.94 2.46E-13 167503000 370490 656300 673300 216951 965500 667800 789210 831400 625350 618840 FALSE TRUE FALSE 344520.5642 604292.3978 934019.7916 505072.8921 844397.9871 585413.6257 591741.3106 642108.3693 679555.8415 463878.436 0.742695796 1.302695601 2.013501209 1.088804421 1.820300151 1.261997929 1.275638755 1.384216897 1.464943806 1 18.82338726 -10.05520437 4.993087646 0.999993871 1.388574666 0.098338241 0.335550955 2.71E-05 5.13E-06 0.316865206 0.076849629 8.81E-11 10.05520437 0.388580795 VTGPRLSGGHS(ph)LHETSTVLVETVTK ddPTM_HeLa_A486_30min_R1 1 VTGPRLSGGHSLHETSTVLVETVTK 25 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 VT(0.047)GPRLS(0.053)GGHS(0.225)LHET(0.225)S(0.225)T(0.225)VLVETVTK 72.805 0.0054958 353220000 213580 192100 217850 118060 413240 226630 323190 388280 196150 206980 TRUE FALSE FALSE 198609.1449 176877.2964 302207.3542 274849.6464 361407.5859 198670.6948 242324.4436 299877.1201 213152.4399 155150.8608 1.280103403 1.140034258 1.947829053 1.771499333 2.329394655 1.280500113 1.561863353 1.932809902 1.37383988 1 17.24331218 -8.012227415 9.663380027 1.000004012 1.658590054 0.262020833 0.344390782 0.348736918 264.1734812 0.34641197 0.089502635 9.72E-09 8.012227415 0.658586041 VTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK ddPTM_HeLa_A485_30min_R1 2 VTGTEGSSSTLVDYTSTSSTGGSPVRK 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 VTGTEGSSSTLVDYTST(0.001)S(0.009)S(0.036)T(0.029)GGS(0.924)PVRK;VTGTEGSSSTLVDYT(0.011)S(0.105)T(0.075)S(0.075)S(0.054)T(0.054)GGS(0.627)PVRK ; 219.52 2.20E-38 1257330000 153239 114578 123452 235947 248818 132507 205273 173920 162284 321229 TRUE FALSE FALSE 187326.4869 127976.9004 169122.0321 248836.1872 224044.8063 139444.8616 161414.7466 131265.8473 194852.9102 241152.5221 0.776796715 0.530688625 0.701307333 1.031862263 0.929058524 0.57824343 0.669347122 0.544327076 0.808006935 1 17.87958637 -6.272960042 24.89704855 0.688340508 0.787388818 0.027589018 0.172606045 2262.60601 4889653.734 0.063595142 0.056554172 5.33E-07 6.272960042 0.09904831 VTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK ddPTM_HeLa_A486_30min_R1 2 VTGTEGSSSTLVDYTSTSSTGGSPVRK 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 VTGTEGSSSTLVDYTS(0.008)T(0.025)S(0.253)S(0.091)T(0.024)GGS(0.598)PVRK;VTGTEGSSSTLVDYTS(0.001)T(0.001)S(0.024)S(0.14)T(0.093)GGS(0.74)PVRK ; 251.11 5.74E-51 973470000 167243 214910 153812 85351 249550 229860 254270 251650 207250 225660 TRUE FALSE FALSE 155520.1293 197879.7489 213372.1256 198701.4414 218249.112 201502.2102 190648.9566 194354.7885 225214.5969 169153.2672 0.919403639 1.169825166 1.261412973 1.174682846 1.290244733 1.191240427 1.12707818 1.148986311 1.331423274 1 17.36797152 -4.269012195 4.338627345 1.197752421 0.900743604 0.455850824 0.088086435 0.164752047 7.441480476 0.020811583 0.149434133 5.38E-05 4.269012195 -0.297008817 VTHAVVTVPAYFNDAQR ddPTM_HeLa_A485_30min_R1 2 VTHAVVTVPAYFNDAQR 17 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 176.81 9.39E-14 138422000 113385 157526 149353 124083 171857 154920 172338 187191 138111 168876 FALSE FALSE TRUE 138607.1021 175947.2954 204604.8898 130861.3401 154746.3137 163031.3716 135516.5784 141282.1137 165828.6109 126778.3211 1.093302868 1.387834244 1.613879155 1.032205971 1.220605481 1.285956228 1.068925485 1.114402782 1.308020247 1 16.95194854 -5.284361564 24.99771369 1.157509946 1.367288388 0.301010061 0.151540759 986.8735467 1076229.666 0.042731072 0.063427876 5.20E-06 5.284361564 0.209778442 VTHAVVTVPAYFNDAQR ddPTM_HeLa_A486_30min_R1 2 VTHAVVTVPAYFNDAQR 17 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 161.19 8.47E-11 113759000 100962 124778 117425 36638 149491 117172 127042 123285 114917 116067 FALSE FALSE TRUE 93885.08517 114890.1368 162895.1048 85295.11558 130740.4448 102716.51 95254.74789 95215.69679 124878.0981 87003.06773 1.07910086 1.320529722 1.872291506 0.980369058 1.502710746 1.18060791 1.094843554 1.094394707 1.435329826 1 16.40877865 -6.402953985 8.16413434 1.160401475 1.357396205 0.127741004 0.248433354 0.642761629 40.52450525 0.086793732 0.076411899 3.95E-07 6.402953985 0.19699473 VTIAQGGVLPNIQAVLLPK ddPTM_HeLa_A485_30min_R1 4 VTIAQGGVLPNIQAVLLPK 19 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;Q93077;Q7L7L0;P04908;Q9BTM1 A0A0U1RR32;Q93077;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.J 0 0 ;;; ;;; 302.85 4.59E-72 1788492000 343596 381819 320252 385636 457141 420868 553480 633398 329379 562709 FALSE FALSE TRUE 420027.7448 426469.4107 438726.5416 406702.3182 411626.4369 442903.9977 435224.4765 478056.1474 395482.3441 422436.0022 0.994299119 1.009547975 1.038563331 0.96275487 0.974411354 1.048452299 1.030273164 1.131665258 0.936194695 1 18.68837327 -6.272167237 24.66434743 1.037605918 0.997199784 0.091179703 0.049289567 1259.79547 2896381.144 0.016746936 0.014919621 5.34E-07 6.272167237 -0.040406134 VTIAQGGVLPNIQAVLLPK ddPTM_HeLa_A486_30min_R1 4 VTIAQGGVLPNIQAVLLPK 19 0 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;H0YFX9;Q93077;Q7L7L0;P04908;Q9BTM1 A0A0U1RR32;Q93077;Q9BTM1 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.J 0 0 ;;; ;;; 279.68 2.74E-58 1575200000 479936 510826 343150 212612 824520 484494 604855 550573 454808 566698 FALSE FALSE TRUE 446294.9648 470346.2874 476026.8699 494971.4808 721101.0133 424722.0563 453513.8815 425219.5468 494231.1236 424793.1322 1.050617185 1.107236091 1.120608677 1.16520594 1.697534538 0.999832681 1.067611143 1.001003817 1.163463075 1 18.69640092 VTILGHVQR ddPTM_HeLa_A485_30min_R1 1 VTILGHVQR 9 0 Q01813-2;Q01813;B1APP6;V9GY25 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 105.78 0.0027553 16372000 13928 18790 19050 13656 25826 16416 20160 24243 19604 21436 FALSE FALSE TRUE 17026.23555 20987.32705 26097.38774 14401.9927 23254.67276 17275.51638 15852.65131 18297.36624 23538.34298 16092.3997 1.058029621 1.304176347 1.621721323 0.894956189 1.445071785 1.073520214 0.985101763 1.137019126 1.462699375 1 13.97409186 -6.312030464 24.99443617 1.131071387 1.266262855 0.082465333 0.221991457 1018.27153 503072.2155 0.077710345 0.068534128 4.87E-07 6.312030464 0.135191468 VTILGHVQR ddPTM_HeLa_A486_30min_R1 1 VTILGHVQR 9 0 Q01813-2;Q01813;B1APP6;V9GY25 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 120.12 0.00096925 11967000 16765 20655 19565 3258.6 27445 18933 22054 23112 18007 19320 FALSE FALSE TRUE 15589.86007 19018.22258 27141.09197 7586.185481 24002.59219 16597.23896 16535.85594 17849.90213 19567.86126 14482.14625 1.076488236 1.313218514 1.874107021 0.523830194 1.657391921 1.146048291 1.14180976 1.232545358 1.351171361 1 13.8219878 -13.08104693 0.272856121 2.49E-10 1.279038394 0.046528226 0.339534181 441.8953275 6.831988296 248.1345529 0.398222358 8.30E-14 13.08104693 1.279038394 VTIPPPSSSVAISNHVT(ph)PPPIPK ddPTM_HeLa_A485_30min_R1 2 VTIPPPSSSVAISNHVTPPPIPK 23 0 A0A1W2PRW5;F5H2U7;A0A1W2PNT6;F5GYH1;A0A1W2PRM0;A0A1W2PRL5;A0A1W2PR09;Q8NC96 A0A1W2PRW5 NECAP1 Adaptin ear-binding coat-associated protein 1 1 0 VTIPPPSSSVAISNHVT(1)PPPIPK;VTIPPPSSSVAIS(0.002)NHVT(0.998)PPPIPK ; 115.45 0.00014964 703750000 325410 412430 378960 172567 505930 377060 517600 579290 352300 402150 TRUE FALSE FALSE 397796.3318 460660.1008 519153.0738 181993.8982 455557.8328 396802.2786 407010.5316 437218.2192 423003.3785 301901.406 1.317636566 1.525862721 1.719611315 0.602825607 1.508962276 1.314343924 1.348157125 1.448215247 1.401130866 1 18.20371795 VTIPPPSSSVAISNHVT(ph)PPPIPK ddPTM_HeLa_A486_30min_R1 2 VTIPPPSSSVAISNHVTPPPIPK 23 0 A0A1W2PRW5;F5H2U7;A0A1W2PNT6;F5GYH1;A0A1W2PRM0;A0A1W2PRL5;A0A1W2PR09;Q8NC96 A0A1W2PRW5 NECAP1 Adaptin ear-binding coat-associated protein 1 1 0 VTIPPPSSSVAIS(0.001)NHVT(0.999)PPPIPK;VTIPPPS(0.016)S(0.016)S(0.016)VAIS(0.061)NHVT(0.89)PPPIPK ; 109.23 0.00026997 358480000 345990 370370 304950 49756 437550 305430 385040 366630 360860 229810 TRUE FALSE FALSE 321737.8877 341020.5323 423034.8068 115834.4825 382668.399 267749.152 288698.9195 283156.3525 392139.6354 172264.0802 1.867701539 1.979638076 2.45573428 0.672423888 2.221405638 1.55429473 1.675908983 1.643734156 2.276386551 1 17.39426238 -10.96897128 2.643258296 0.336619554 1.801318332 0.210451715 0.473562211 31817262.11 15666175.47 129195289.1 0.116087043 1.07E-11 10.96897128 1.464698778 VTK(ac)KETLK(ac)AQK ddPTM_HeLa_A486_30min_R1 1 VTKKETLKAQK 11 3 Q9H0X9-3;Q9H0X9-2;Q9H0X9;E9PRA9;E9PJE6;E9PPQ2 Q9H0X9-3 OSBPL5 Oxysterol-binding protein-related protein 5 0 2 VTK(0.501)K(0.501)ETLK(0.998)AQK 72.652 0.037452 4702800 7864.6 9789.9 7701.1 3686.7 12510 11634 9734.8 11288 8957.8 10963 FALSE TRUE FALSE 7313.332153 9014.11267 10683.17216 8582.823916 10940.87915 10198.71537 7299.050076 8717.968815 9734.269316 8217.793443 0.889938668 1.09690183 1.300004951 1.044419524 1.331364584 1.241052776 0.888200723 1.060864924 1.184535652 1 13.00453535 -6.739268274 24.9998555 1.038472246 1.158351699 0.145107551 0.138397412 482.5889464 544161.092 0.054469941 0.042157494 1.82E-07 6.739268274 0.119879453 VTKS(ph)PAPVHR ddPTM_HeLa_A485_30min_R1 3 VTKSPAPVHR 10 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 VT(0.178)KS(0.822)PAPVHR;VT(0.031)KS(0.969)PAPVHR;VT(0.006)KS(0.994)PAPVHR ;; 101.43 0.00071798 2854300000 2113960 2473550 1799630 2512030 2945230 2636420 3572000 3728500 1976320 3239500 TRUE FALSE FALSE 2584203.109 2762810.155 2465388.026 2649255.838 2651992.56 2774458.875 2808813.019 2814079.529 2372949.296 2431952.269 1.06260437 1.136046209 1.013748525 1.08935355 1.090478869 1.140836072 1.154962232 1.15712778 0.975738433 1 21.21368348 -7.773637257 24.99919619 0.987869114 1.105363276 0.547622358 0.042817228 202.6285199 415268.0182 0.042735573 0.011361707 1.68E-08 7.773637257 0.117494162 VTKS(ph)PAPVHR ddPTM_HeLa_A486_30min_R1 4 VTKSPAPVHR 10 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 VT(0.065)KS(0.935)PAPVHR;VT(0.11)KS(0.89)PAPVHR;VT(0.006)KS(0.994)PAPVHR;VT(0.048)KS(0.952)PAPVHR ;;; 84.506 0.0028438 3049871000 1802910 1927020 1241366 826626 2087970 1841230 2304980 2215530 1434630 2198550 TRUE FALSE FALSE 1676535.319 1774315.917 1722056.16 1924427.103 1826077.333 1614077.763 1728249.624 1711102.184 1558984.884 1648018.77 1.017303534 1.076635746 1.044925089 1.167721593 1.108044014 0.979404963 1.048683216 1.038278335 0.945975199 1 20.65230124 -6.258977587 24.99719224 1.007749168 1.085176243 0.433616422 0.045742284 237.9611368 2416273.863 0.016143721 0.015427103 5.51E-07 6.258977587 0.077427076 VTKS(ph)PGETSKPRPFAGGGYR ddPTM_HeLa_A485_30min_R1 2 VTKSPGETSKPRPFAGGGYR 20 3 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 VT(0.035)KS(0.965)PGETSKPRPFAGGGYR;VT(0.047)KS(0.952)PGETSKPRPFAGGGYR ; 88.573 0.0038786 6013400000 1520730 1674910 962470 1414410 2397600 2442400 3325500 4717400 1516140 2414200 TRUE FALSE FALSE 1859011.142 1870776.155 1318527.705 1491675.637 2158886.526 2570280.287 2614979.758 3560450.253 1820415.391 1812384.37 1.025726757 1.032218212 0.727509973 0.823045962 1.1911858 1.418176149 1.4428395 1.964511674 1.004431191 1 20.78945752 -6.001257817 3.030250049 1.429366824 0.900218187 0.385738869 0.269171743 0.237566438 4.470790957 0.089859833 0.09748438 9.97E-07 6.001257817 -0.529148637 VTKS(ph)PGETSKPRPFAGGGYR ddPTM_HeLa_A486_30min_R1 2 VTKSPGETSKPRPFAGGGYR 20 3 F2Z2K0;Q9UNZ2;Q9UNZ2-5;Q9UNZ2-6 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 VT(0.243)KS(0.753)PGET(0.003)S(0.001)KPRPFAGGGYR;VT(0.225)KS(0.775)PGETSKPRPFAGGGYR ; 96.793 0.0019853 4923300000 2198400 1884890 907830 1126840 2448700 2247420 3112000 3300000 1349950 2828400 TRUE FALSE FALSE 2044303.513 1735524.452 1259366.089 2623340.467 2141561.213 1970156.17 2333344.685 2548662.038 1466964.753 2120150.23 0.964225781 0.818585602 0.593998515 1.237337067 1.010098804 0.929253098 1.100556296 1.202113889 0.691915475 1 21.01573506 -5.260713762 24.99992667 1.031493579 0.794901541 0.292436673 0.165245936 81.25433022 2799430.473 0.044909194 0.072262625 5.49E-06 5.260713762 -0.236592038 VTLATLK ddPTM_HeLa_A485_30min_R1 2 VTLATLK 7 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 0 ; ; 185.42 2.95E-05 157587000 327920 351800 308190 367110 485220 376200 491890 471200 354530 517690 FALSE FALSE TRUE 400864.6727 392939.9497 422202.3059 387164.2897 436909.7931 395897.2503 386793.6831 355637.4612 425680.9191 388639.4104 1.031456569 1.011065629 1.08635999 0.996204398 1.12420352 1.018674997 0.995250798 0.91508337 1.095310737 1 18.56807268 -6.517133233 22.96585844 0.996138805 1.049218935 0.156257969 0.052919388 152.4646193 609443.9473 0.018929355 0.015191292 3.04E-07 6.517133233 0.053080129 VTLATLK ddPTM_HeLa_A486_30min_R1 2 VTLATLK 7 0 P06748;P06748-3;P06748-2;E5RI98 P06748;E5RI98 NPM1 Nucleophosmin 0 0 ; ; 170.73 0.0006249 107951000 144054 168095 116315 54955 189810 179312 193998 198276 145186 189317 FALSE FALSE TRUE 133956.5585 154774.54 161355.283 127938.0173 166002.2599 157190.3086 145457.6485 153132.8831 157770.8394 141910.791 0.943949065 1.090646729 1.137019123 0.901538328 1.169764884 1.107669878 1.024993572 1.079078498 1.111760694 1 17.11462477 -4.255930568 23.86493103 1.071483732 0.943948962 0.208251741 0.073118633 500.4362828 2167828.857 0.017561341 0.146693542 5.55E-05 4.255930568 -0.12753477 VTLILELLQHK ddPTM_HeLa_A486_30min_R1 1 VTLILELLQHK 11 0 Q5T3Q7;Q9H583 Q5T3Q7 HEATR1 "HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed" 0 0 105.86 0.023744 0 5096.5 5484.6 2871.4 3038.8 4447 4962.9 5533.5 5345.7 3577.3 6581.4 FALSE FALSE TRUE 4739.261668 5049.980321 3983.282979 7074.479972 3889.215793 4350.627857 4148.959773 4128.600806 3887.383244 4933.374602 0.960653113 1.023636097 0.807415471 1.434004215 0.788347958 0.881876648 0.840998324 0.836871541 0.787976498 1 12.26835912 VTLLDLMIAK ddPTM_HeLa_A485_30min_R1 1 VTLLDLMIAK 10 0 A0A1W2PQD2;Q9UBB4-2;Q9UBB4 A0A1W2PQD2 ATXN10 Ataxin-10 0 0 95.502 0.0088923 0 1131.9 1359.8 1341.6 1317.9 2013.6 1766 1885.5 2606.4 1569.1 2619.9 FALSE FALSE TRUE 1383.68725 1518.816781 1837.913669 1389.89354 1813.118914 1858.465029 1482.647522 1967.176313 1884.003977 1966.807146 0.703519536 0.772224559 0.934465625 0.706675051 0.921859023 0.944914723 0.753834724 1.000187699 0.957899701 1 10.94163979 -1.328487532 0.14878568 1.038577292 2.28E-18 0.461739259 0.084123882 59.41669421 0.635496494 0.31094476 13.05792051 0.046936691 1.328487532 -1.038577292 VTLLDLMIAK ddPTM_HeLa_A486_30min_R1 2 VTLLDLMIAK 10 0 A0A1W2PQD2;Q9UBB4-2;Q9UBB4 A0A1W2PQD2 ATXN10 Ataxin-10 0 0 ; ; 168.8 8.90E-06 3553400 8634.3 10353.8 6424.4 4063.9 10567.2 10101 10754.5 11486.4 8721.3 12284.3 FALSE FALSE TRUE 8029.080158 9533.32718 8912.099731 9460.964578 9241.763241 8854.841319 8063.61035 8871.197466 9477.269306 9208.231323 0.871945966 1.035304919 0.967840557 1.027446449 1.003641516 0.96162238 0.875695893 0.963398633 1.029217118 1 13.16870836 -9.691154439 0.004165845 1.498058298 0.465640126 0.026496792 0.055463354 261425.8448 235.2767326 29789.68535 28524.35929 2.04E-10 9.691154439 -1.032418172 VTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_HeLa_A485_30min_R1 4 VTLQDYRLPDSDDDEDEETAIQR 23 1 H3BRF9;Q96K21-2;Q96K21;Q96K21-4 H3BRF9 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 VTLQDYRLPDS(1)DDDEDEETAIQR;VTLQDYRLPDS(1)DDDEDEETAIQR;VTLQDYRLPDS(1)DDDEDEETAIQR;VTLQDYRLPDS(1)DDDEDEETAIQR ;;; 223.34 2.02E-38 1294300000 169307 627191 374731 99592 556052 777700 853960 1897560 327344 177569 TRUE FALSE FALSE 206968.758 700535.5316 513359.5908 105032.4588 500689.5105 818419.1694 671504.4698 1432180.435 393038.9382 133304.3162 1.552603576 5.255160159 3.851035025 0.787914913 3.755988738 6.139479896 5.0373798 10.74369139 2.9484337 1 17.02436397 -6.150979836 4.620125373 5.767782488 3.020156863 0.126694835 2.628049187 0.382347937 13.05153175 0.856786657 0.857970028 7.06E-07 6.150979836 -2.747625625 VTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_HeLa_A486_30min_R1 1 VTLQDYRLPDSDDDEDEETAIQR 23 1 H3BRF9;Q96K21-2;Q96K21;Q96K21-4 H3BRF9 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 VTLQDYRLPDS(1)DDDEDEETAIQR 169.57 8.34E-15 115780000 96157 70572 97602 50414 255550 60931 137710 183190 56985 119690 TRUE FALSE FALSE 89416.89086 64979.6177 135396.1083 117366.3398 223496.5361 53413.95272 103253.5015 141481.636 61924.50568 89718.84495 0.996634441 0.724258295 1.509115597 1.308157053 2.491076833 0.595348199 1.150856339 1.576944466 0.690206229 1 16.45312343 -7.771575626 24.99841032 0.845103018 1.294532877 0.113086625 0.502906588 538.837119 1328854.983 0.471755581 0.127415911 1.69E-08 7.771575626 0.449429858 VTLSRYGK(ac)YGHK(ac)NLQLR ddPTM_HeLa_A486_30min_R1 1 VTLSRYGKYGHKNLQLR 17 3 E7EWC5;J3QSS9;P52744;P52744-2 E7EWC5 ZNF138 Zinc finger protein 138 0 2 VTLSRYGK(1)YGHK(1)NLQLR 60.209 0.017762 14292000 20960 17714 12683 3125 20535 18255 20133 20972 16958 19044 FALSE TRUE FALSE 19490.81224 16310.27813 17594.19726 7275.157929 17959.30882 16002.8837 15095.51045 16197.13342 18427.93309 14275.25844 1.365356173 1.142555716 1.232495883 0.509634061 1.258072412 1.121022345 1.057459696 1.134629785 1.290900138 1 13.80122924 -4.319768457 1.900718355 1.068426993 1.42648647 0.151919487 0.208365639 1.390640049 5.819003721 0.056933333 0.844496423 4.79E-05 4.319768457 0.358059477 VTLTSEEEAR ddPTM_HeLa_A485_30min_R1 2 VTLTSEEEAR 10 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 271.93 1.97E-45 319770000 129783 168804 165589 128201 209311 169250 190559 205657 161330 181565 FALSE FALSE TRUE 158652.7806 188544.1594 226847.2618 135204.296 188471.2619 178111.6683 149844.5129 155219.2983 193707.4512 136304.187 1.163961168 1.383260218 1.664272147 0.991930615 1.382725403 1.306721916 1.099339032 1.138771316 1.421140873 1 17.05647035 -14 0.113764993 0.09017126 1.43515186 0.173233731 0.184292868 277.6525102 2.077343691 58.5834776 2.096351977 1.00E-14 14 1.3449806 VTLTSEEEAR ddPTM_HeLa_A486_30min_R1 2 VTLTSEEEAR 10 0 P00338;P00338-3;P00338-4 P00338 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 210.6 2.17E-20 31984000 23367.1 31533 28796 9918.3 40150 32041 37044 34543 28780 33621 FALSE FALSE TRUE 21729.18696 29034.21024 39946.58238 23090.30364 35114.01262 28088.10719 27775.19939 26678.31297 31274.67357 25202.08276 0.862198064 1.152055983 1.585050837 0.916206167 1.393298044 1.114515314 1.102099364 1.058575722 1.240955911 1 14.62125535 -6.484533074 24.98258621 1.105720022 1.19437767 0.034266932 0.203324815 2120.653272 1381628.634 0.070696216 0.062335919 3.28E-07 6.484533074 0.088657648 VTLYNTDQDGSDS(ph)PR ddPTM_HeLa_A485_30min_R1 5 VTLYNTDQDGSDSPR 15 0 C9JXI1;C9JVP0;Q9UPW0-2;Q9UPW0 C9JXI1 FOXJ3 Forkhead box protein J3 1 0 VTLYNTDQDGSDS(1)PR;VTLYNTDQDGSDS(1)PR;VTLYNTDQDGSDS(1)PR;VTLYNTDQDGSDS(1)PR;VTLYNTDQDGS(0.003)DS(0.997)PR ;;;; 420.48 3.01E-171 2212660000 678760 803920 861440 706260 974600 773140 902670 913180 702720 993730 TRUE FALSE FALSE 829747.8203 897931.4508 1180122.504 744841.1955 877565.402 813620.4149 709807.1804 689221.1732 843749.4583 746011.3992 1.112245498 1.20364307 1.581909478 0.998431386 1.176343154 1.090627322 0.951469617 0.923874855 1.131014163 1 19.50883815 -5.871508754 1.343106368 1.006893177 1.270463563 0.339241258 0.145530892 0.479480615 1.8087124 0.059926169 0.076064887 1.34E-06 5.871508754 0.263570387 VTLYNTDQDGSDS(ph)PR ddPTM_HeLa_A486_30min_R1 5 VTLYNTDQDGSDSPR 15 0 C9JXI1;C9JVP0;Q9UPW0-2;Q9UPW0 C9JXI1 FOXJ3 Forkhead box protein J3 1 0 VTLYNTDQDGS(0.003)DS(0.997)PR;VTLYNTDQDGS(0.01)DS(0.99)PR;VTLYNTDQDGSDS(1)PR;VTLYNTDQDGSDS(1)PR;VTLYNTDQDGSDS(1)PR ;;;; 289.75 4.57E-67 3093530000 1699330 1937450 1583450 612541 2126140 1721320 1952250 2084410 1651870 1850170 TRUE FALSE FALSE 1580215.742 1783919.406 2196604.246 1426026.404 1859459.696 1508961.039 1463776.401 1609835.345 1795055.422 1386875.389 1.139407155 1.286286727 1.583851197 1.028229656 1.340754699 1.088029286 1.055449114 1.160764231 1.294316299 1 20.40340674 -5.293180667 24.99935216 1.147817811 1.33149245 0.280712214 0.144823159 892.2959847 702768.0128 0.040614353 0.060247043 5.09E-06 5.293180667 0.183674639 VTMLFLGLHNVR ddPTM_HeLa_A485_30min_R1 1 VTMLFLGLHNVR 12 0 H7BZ35;P14868-2;P14868 H7BZ35 DARS "Aspartate--tRNA ligase, cytoplasmic" 0 0 158.4 3.85E-06 24975000 49271 60073 57128 52660 81885 50495 74259 76268 47632 82969 FALSE FALSE TRUE 60231.16397 67098.01478 78262.02449 55536.68246 73732.24188 53138.84012 58392.95801 57563.15342 57191.30549 62286.35523 0.96700415 1.07725062 1.256487463 0.891634809 1.183762344 0.853137737 0.937491972 0.924169559 0.918199585 1 15.92662853 -6.270586497 24.90522623 0.922541131 1.075210616 0.352888859 0.100558144 701.2805716 1909399.74 0.033951479 0.030361936 5.36E-07 6.270586497 0.152669485 VTMLFLGLHNVR ddPTM_HeLa_A486_30min_R1 2 VTMLFLGLHNVR 12 0 H7BZ35;P14868-2;P14868 H7BZ35 DARS "Aspartate--tRNA ligase, cytoplasmic" 0 0 ; ; 147.71 8.45E-05 74154000 84787 93535 75264 34394 106278 87752 109300 102133 86065 107052 FALSE FALSE TRUE 78843.86914 86122.94595 104408.2364 80070.97018 92947.62224 76926.05044 81951.98394 78879.54545 93525.1835 80245.48241 0.982533431 1.073243544 1.301110459 0.99782527 1.158291027 0.958634033 1.021266014 0.98297802 1.165488457 1 16.29213255 -6.255548181 24.70297864 1.024333976 1.106177246 0.133709194 0.09766285 874.1145639 3665334.83 0.032481797 0.031673549 5.55E-07 6.255548181 0.08184327 VTNDIS(ph)PES(ph)S(ph)PGVGR ddPTM_HeLa_A485_30min_R1 1 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 3 0 VTNDIS(1)PES(1)S(1)PGVGR 174.02 1.27E-11 0 81772 110130 103290 97450 124370 113400 127360 130410 106850 122750 TRUE FALSE FALSE 99961.89929 123008.7455 141501.2693 102773.4467 111987.2861 119337.4487 100148.4956 98426.74303 128293.8149 92150.68405 1.084765678 1.334865246 1.535542256 1.115276005 1.215262668 1.295025098 1.086790582 1.068106483 1.392217716 1 16.49170725 VTNDIS(ph)PES(ph)S(ph)PGVGR ddPTM_HeLa_A486_30min_R1 2 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 3 0 VTNDIS(1)PES(1)S(1)PGVGR;VTNDIS(1)PES(1)S(1)PGVGR ; 188.9 3.98E-18 786220000 207240 227380 186220 86044 270120 213570 245650 251480 203280 240930 TRUE FALSE FALSE 192713.5462 209361.5807 258329.3711 200314.7804 236239.0308 187221.9048 184185.7718 194223.4938 220900.4741 180599.5598 1.0670765 1.159258533 1.430398675 1.109165386 1.308081986 1.036668666 1.019857258 1.075437249 1.223150678 1 17.46243485 -6.275245809 24.75636842 1.072539748 1.217820327 0.295085049 0.111045962 935.6236114 1677666.206 0.039204355 0.034764136 5.31E-07 6.275245809 0.145280579 VTNDIS(ph)PES(ph)SPGVGR ddPTM_HeLa_A486_30min_R1 1 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 VTNDIS(1)PES(0.949)S(0.051)PGVGR 118.42 3.35E-05 0 170880 194400 159650 62151 217380 182660 228670 236820 158620 186630 TRUE FALSE FALSE 158902.1944 178995.036 221470.7556 144690.6689 190114.1734 160125.2664 171454.3474 182901.2557 172369.3093 139896.6332 1.135854314 1.279480656 1.583102827 1.034268414 1.358961749 1.144596997 1.225578796 1.307402841 1.232119068 1 17.09400172 -12.9275007 0.292182312 2.20E-09 1.276184056 0.22906165 0.140798515 188.1210345 3.185538395 113.2618908 0.147836266 1.18E-13 12.9275007 1.276184053 VTNDIS(ph)PESS(ph)PGVGR ddPTM_HeLa_A485_30min_R1 2 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 VTNDIS(1)PES(0.002)S(0.999)PGVGR;VTNDIS(1)PESS(1)PGVGR ; 361.23 1.60E-104 2395200000 1517820 1972810 1739780 1564500 2390400 1766170 2194500 2326500 1643990 1953050 TRUE FALSE FALSE 1855453.823 2203512.968 2383397.02 1649964.673 2152403.383 1858643.93 1725627.148 1755922.227 1973923.713 1466190.578 1.265492938 1.50288305 1.625571093 1.125341206 1.46802429 1.267668718 1.176946008 1.197608451 1.346294092 1 20.48364121 -8.003796416 0.170916655 0.844762805 1.562615568 0.389685864 0.141020068 5.389890378 0.69107024 1.431703031 0.969735139 9.91E-09 8.003796416 0.717852763 VTNDIS(ph)PESS(ph)PGVGR ddPTM_HeLa_A486_30min_R1 2 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 VTNDIS(1)PES(0.001)S(0.999)PGVGR;VTNDIS(1)PES(0.155)S(0.845)PGVGR ; 338.27 2.48E-90 3257600000 2388200 2761500 2190700 842130 3003600 2391900 2720200 2807100 2213700 2457200 TRUE FALSE FALSE 2220799.513 2542668.683 3038997.709 1960521.199 2626860.481 2096811.697 2039577.189 2167984.609 2405585.298 1841901.126 1.205710492 1.380458835 1.649924453 1.06440089 1.426168019 1.138395361 1.107321756 1.177036366 1.306033893 1 20.81276419 -5.98581545 1.248950928 1.154708634 1.377396269 0.248955925 0.161662834 0.654712383 2.133562799 0.070494207 0.081410411 1.03E-06 5.98581545 0.222687634 VTNDIS(ph)PESSPGVGR ddPTM_HeLa_A485_30min_R1 4 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 VT(0.002)NDIS(0.778)PES(0.196)S(0.024)PGVGR;VTNDIS(0.681)PES(0.293)S(0.026)PGVGR;VTNDIS(0.932)PES(0.066)S(0.002)PGVGR;VTNDIS(0.981)PES(0.018)SPGVGR ;;; 237.73 4.31E-41 5805090000 2119940 2842920 2875950 2516810 3685350 2768530 3243390 3598740 2932610 3252120 TRUE FALSE FALSE 2591513.339 3175374.764 3939883.583 2654296.957 3318423.614 2913485.95 2550413.23 2716143.372 3521157.928 2441426.335 1.061475131 1.300622803 1.61376304 1.08719109 1.35921513 1.193354028 1.044640665 1.112523173 1.442254422 1 21.21929282 -6.457988245 6.885496059 1.153664236 1.291736258 0.111903431 0.179916093 0.582345875 52.34510527 0.064110194 0.056045132 3.48E-07 6.457988245 0.138072023 VTNDIS(ph)PESSPGVGR ddPTM_HeLa_A486_30min_R1 3 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 VTNDIS(0.848)PES(0.149)S(0.003)PGVGR;VTNDIS(0.714)PES(0.252)S(0.033)PGVGR;VT(0.001)NDIS(0.963)PES(0.032)S(0.004)PGVGR ;; 218.11 1.73E-33 4203950000 2476340 2868350 2254530 737580 3266200 2550960 2822940 2780090 2354620 2351590 TRUE FALSE FALSE 2302761.354 2641051.5 3127544.394 1717123.515 2856522.74 2236248.491 2116610.554 2147124.196 2558720.357 1762736.558 1.306355929 1.498267843 1.774255138 0.974123733 1.620504622 1.268623199 1.200752628 1.218063009 1.451561407 1 20.74938545 -13.00340912 0.091437931 3.94E-20 1.686296535 0.231916719 0.21358731 236.4918271 1.839785028 49.7763013 5.055518051 9.92E-14 13.00340912 1.686296535 VTNDISPES(ph)SPGVGR ddPTM_HeLa_A486_30min_R1 2 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 VTNDIS(0.362)PES(0.541)S(0.097)PGVGR;VTNDIS(0.043)PES(0.843)S(0.114)PGVGR ; 154.47 3.04E-08 1043820000 836790 861140 777400 254580 1029800 778130 879560 911670 719900 821950 TRUE FALSE FALSE 778135.3422 792900.1302 1078430.099 592675.1058 900632.8815 682132.232 659484.785 704102.6426 782301.5116 616128.37 1.262943536 1.286907354 1.750333456 0.961934452 1.461761745 1.107126802 1.070369126 1.142785622 1.269705389 1 19.23287144 -5.959975829 1.163181243 1.125082063 1.379414267 0.221147538 0.197986394 0.742688303 2.122893861 0.087892341 0.105382757 1.10E-06 5.959975829 0.254332204 VTNLLMLK ddPTM_HeLa_A486_30min_R1 1 VTNLLMLK 8 0 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;K7ELW5;K7EKJ7;X6R242;O95758-1;O95758-6;O95758-2;O95758;O95758-5;O95758-4;A0A0U1RRM4 A6NLN1;X6R242;A0A0U1RRM4 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 0 0 120.07 0.033809 23857000 25244 31935 28404 19248 52566 27934 34421 35519 25028 36475 FALSE FALSE TRUE 23474.52596 29404.35429 39402.78949 44810.31674 45972.68212 24487.78709 25808.50173 27432.09907 27197.44719 27341.42259 0.858570028 1.075450782 1.441138966 1.638916797 1.681429778 0.89562959 0.943934122 1.003316451 0.994734166 1 14.73880069 -6.291266135 24.90798949 0.966255799 1.346779262 0.395547148 0.229568305 793.6609716 662774.7347 0.091351264 0.080574445 5.11E-07 6.291266135 0.380523462 VTNSVSSELQPYFQTLPVMTK ddPTM_HeLa_A485_30min_R1 1 VTNSVSSELQPYFQTLPVMTK 21 0 A0A0D9SFX6;H0Y738;A0A2R8YDF1;P17213 A0A0D9SFX6 BPI Bactericidal permeability-increasing protein 0 0 58.49 0.012963 11961000 12296 45794 56060 2902.6 39483 29488 19247 35145 32860 6381.4 FALSE FALSE TRUE 15031.20278 51149.20995 76798.92685 3061.161688 35551.93389 31031.94608 15134.72122 26525.63364 39454.70059 4790.634421 3.13762259 10.6769178 16.03105562 0.638988789 7.421132727 6.47762767 3.159231093 5.536977217 8.235798669 1 12.22600101 -5.273501452 24.9971601 4.958510142 10.02137105 0.293239764 3.754264536 963.8334313 1997424.052 1.050478731 1.571688981 5.33E-06 5.273501452 5.062860912 VTPDIEES(ph)LLEPENEK ddPTM_HeLa_A485_30min_R1 2 VTPDIEESLLEPENEK 16 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 1 0 VTPDIEES(1)LLEPENEK;VTPDIEES(1)LLEPENEK ; 336.79 7.56E-91 108413000 155206 85700 77955 133480 164319 116225 202992 176648 83620 213260 TRUE FALSE FALSE 189731.0392 95721.86951 106793.7985 140771.6744 147958.8234 122310.3613 159621.1009 133324.801 100401.767 160098.2068 1.185091595 0.597894701 0.667051809 0.879283268 0.924175395 0.763970839 0.997019918 0.832768859 0.627126119 1 17.28859762 -4.238292417 24.13522362 0.81037947 1.185092267 0.399490539 0.137991776 4365.700641 4551986.493 0.034863108 1.824345378 5.78E-05 4.238292417 0.374712797 VTPDIEES(ph)LLEPENEK ddPTM_HeLa_A486_30min_R1 4 VTPDIEESLLEPENEK 16 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 1 0 VTPDIEES(1)LLEPENEK;VTPDIEES(1)LLEPENEK;VTPDIEES(1)LLEPENEK;VTPDIEES(1)LLEPENEK ;;; 195.6 1.02E-18 141474000 203061 241833 170095 131829 239903 319839 392287 363379 190612 365000 TRUE FALSE FALSE 188827.4725 222669.2723 235960.3393 306904.5743 209812.1287 280380.5161 294132.6434 280645.5342 207134.4016 273601.6242 0.690154794 0.813844848 0.862423021 1.121720586 0.766852643 1.024776504 1.075039829 1.025745132 0.757065687 1 18.06171727 -4.670012425 1.852642311 0.967439422 0.694869719 0.367272423 0.115356648 0.451965562 2.697601187 0.032228848 0.162869732 2.14E-05 4.670012425 -0.272569703 VTPFNYNPS(ph)PR ddPTM_HeLa_A485_30min_R1 2 VTPFNYNPSPR 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 VTPFNYNPS(1)PR;VTPFNYNPS(1)PR ; 113.34 0.000436 436910000 172049 244720 221830 171967 313070 239610 267090 293340 205580 254860 TRUE FALSE FALSE 210320.7065 273337.8752 303894.1481 181361.1218 281899.6515 252155.6091 210024.0396 221397.9051 246838.0203 191328.0924 1.099267253 1.4286343 1.588340449 0.947906392 1.473383485 1.317922559 1.097716687 1.157163605 1.290129522 1 17.54568919 -8.303318772 0.31356114 0.960763261 1.344753968 0.174777637 0.183897335 4.426661401 1.052579877 0.556262462 0.237782119 4.97E-09 8.303318772 0.383990707 VTPFNYNPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 VTPFNYNPSPR 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 VTPFNYNPS(1)PR;VTPFNYNPS(1)PR ; 119.17 0.00021381 365990000 262322 284723 235008 128771 319453 251271 270311 294420 216627 309810 TRUE FALSE FALSE 243934.5824 262160.5125 326009.3913 299785.3957 279384.226 220271.7388 202676.3287 227386.9931 235404.4028 232231.5595 1.050393766 1.128875477 1.403811748 1.290889991 1.203041596 0.94850045 0.872733789 0.97913907 1.013662412 1 17.82520452 -6.240643578 5.725547609 0.955254542 1.226695529 0.640201961 0.094486199 0.120114762 13.94413355 0.03509061 0.033896235 5.75E-07 6.240643578 0.271440987 VTPLPSLAS(ph)PAVPAPGYCSR ddPTM_HeLa_A485_30min_R1 1 VTPLPSLASPAVPAPGYCSR 20 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3;H7C3V8 C9JWC4 HJURP Holliday junction recognition protein 1 0 VTPLPS(0.002)LAS(0.998)PAVPAPGYCSR 101.92 0.0001389 107800000 52069 65098 72652 47305 85901 60084 79022 77244 59589 68166 TRUE FALSE FALSE 63651.56941 72710.64482 99528.9981 49889.15237 77348.39482 63229.90533 62138.30415 58299.78789 71547.96572 51173.4707 1.243839211 1.420866004 1.944933512 0.974902653 1.511494018 1.235599315 1.214267926 1.139258039 1.398145655 1 15.64310846 -5.954687795 1.023787593 1.196766302 1.475132053 0.168872478 0.244691471 0.966440729 2.179288989 0.118923629 0.147608636 1.11E-06 5.954687795 0.27836575 VTPLPSLAS(ph)PAVPAPGYCSR ddPTM_HeLa_A486_30min_R1 1 VTPLPSLASPAVPAPGYCSR 20 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3;H7C3V8 C9JWC4 HJURP Holliday junction recognition protein 1 0 VTPLPSLAS(1)PAVPAPGYCSR 177 2.45E-14 117760000 61047 75806 73178 27855 77110 67501 77428 65838 55923 75102 TRUE FALSE FALSE 56767.92055 69798.85648 101514.4814 64847.84771 67438.14478 59173.41292 58054.69545 50848.12463 60770.45067 56295.97037 1.008383374 1.239855287 1.803228201 1.151909227 1.197921349 1.051112762 1.031240692 0.903228496 1.07948136 1 15.78074404 -6.014856198 1.733285412 1.001282332 1.337756074 0.336283616 0.194380297 0.418492686 2.541048322 0.078256467 0.085492034 9.66E-07 6.014856198 0.336473742 VTPQSLFILFGVYGDVQR ddPTM_HeLa_A486_30min_R1 1 VTPQSLFILFGVYGDVQR 18 0 A6NLN1;P26599;P26599-2;P26599-3;A0A0D9SF20;A0A0U1RRM4 A6NLN1;A0A0U1RRM4 PTBP1 Polypyrimidine tract-binding protein 1 0 0 114.74 4.76E-05 0 552.03 475.21 585.26 304.06 1614 665.18 1075.4 867.37 547.08 429.22 FALSE FALSE TRUE 513.3355477 437.5526289 811.8883458 707.8670463 1411.55707 583.1168547 806.3235456 669.8887856 594.5013349 321.7405182 1.595495496 1.359955008 2.523425866 2.200117816 4.38725305 1.812382406 2.50612994 2.082077785 1.847766449 1 8.329753822 -4.761043161 24.99999987 2.395193655 1.477724998 0.127728073 0.821388952 17.72938582 1118283.666 0.210196768 0.491184857 1.73E-05 4.761043161 -0.917468657 VTPRPQQTSASS(ph)PSSVNSR ddPTM_HeLa_A485_30min_R1 3 VTPRPQQTSASSPSSVNSR 19 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTPRPQQTS(0.013)AS(0.273)S(0.679)PS(0.034)S(0.001)VNSR;VTPRPQQTS(0.01)AS(0.075)S(0.891)PS(0.022)S(0.001)VNSR;VTPRPQQTS(0.001)AS(0.04)S(0.656)PS(0.262)S(0.04)VNSR ;; 134.47 1.18E-06 916019000 108503 178502 170085 101753 173784 148958 147388 189111 125214 158391 TRUE FALSE FALSE 132639.118 199376.2561 233006.5193 107311.5087 156481.4548 156757.2105 115897.3498 142731.2307 150343.3013 118907.0387 1.115485841 1.676740573 1.959568768 0.902482392 1.31599825 1.318317337 0.974688724 1.200359813 1.264376802 1 16.85947459 -5.270630076 24.99785373 1.155751426 1.593212623 0.425843719 0.235902586 619.4093108 1684735.43 0.0664151 0.10008764 5.36E-06 5.270630076 0.437461197 VTPRPQQTSASS(ph)PSSVNSR ddPTM_HeLa_A486_30min_R1 4 VTPRPQQTSASSPSSVNSR 19 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTPRPQQT(0.001)S(0.049)AS(0.178)S(0.652)PS(0.104)S(0.017)VNSR;VTPRPQQTS(0.006)AS(0.243)S(0.507)PS(0.205)S(0.038)VNSR;VTPRPQQTSAS(0.057)S(0.885)PS(0.05)S(0.007)VNSR;VTPRPQQT(0.006)S(0.031)AS(0.176)S(0.781)PS(0.004)S(0.001)VNSR ;;; 159.2 5.44E-10 940690000 175641 203647 156378 65265 242105 153713 175350 186725 155610 181884 TRUE FALSE FALSE 163329.4729 187509.2701 216931.7495 151940.2183 211737.9334 134749.4529 131475.5753 144211.7937 169098.4001 136339.0625 1.197965351 1.375315823 1.591119563 1.114429097 1.553024712 0.988340762 0.964327999 1.057743768 1.240278442 1 17.05683944 -6.276342847 24.87348439 1.048384026 1.365357122 0.523882571 0.150729757 617.5149054 1030612.372 0.051910244 0.04596646 5.29E-07 6.276342847 0.316973096 VTPT(ph)KESYTEEIVSEAESHVSGISR ddPTM_HeLa_A486_30min_R1 1 VTPTKESYTEEIVSEAESHVSGISR 25 1 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 VT(0.489)PT(0.507)KES(0.003)YTEEIVSEAESHVSGISR 274.85 4.14E-75 127540000 125650 128690 87106 3935.2 152400 87666 105750 113950 112810 40129 TRUE FALSE FALSE 116842.5839 118492.1357 120835.776 9161.344474 133284.5709 76850.66024 79290.23149 88006.07251 122588.4616 30080.4372 3.884337952 3.939175981 4.017088421 0.304561546 4.43093862 2.554838539 2.635940128 2.92569127 4.075355049 1 14.87653792 -10.86441313 2.503540908 0.016319073 3.150353443 0.247033573 1.14786734 10691529.13 6551621.753 62645374.63 0.282095576 1.37E-11 10.86441313 3.13403437 VTPTEEHVEGPLPS(ph)PVTNGTSPAQLNGGSACSSR ddPTM_HeLa_A485_30min_R1 2 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BN50;Q15599-3;H3BUQ9;H3BQS0;Q15599-2;Q15599 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 VTPTEEHVEGPLPS(0.56)PVT(0.44)NGTSPAQLNGGSACSSR;VTPTEEHVEGPLPS(1)PVTNGTSPAQLNGGSACSSR ; 316.05 6.39E-110 602700000 125738 143810 136838 110555 136516 125545 152116 133747 118289 170677 TRUE FALSE FALSE 153707.9843 160627.3285 187460.0705 116594.3397 122923.9877 132118.3421 119615.1739 100945.3385 142028.5173 128130.365 1.199621841 1.253624217 1.463041727 0.9099665 0.959366562 1.031124372 0.933542755 0.787833068 1.108468842 1 16.96725289 -5.273877237 24.9216125 0.954282197 1.300248759 0.71122536 0.100346768 365.1240591 731594.809 0.02799145 0.041843034 5.32E-06 5.273877237 0.345966562 VTPTEEHVEGPLPS(ph)PVTNGTSPAQLNGGSACSSR ddPTM_HeLa_A486_30min_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BN50;Q15599-3;H3BUQ9;H3BQS0;Q15599-2;Q15599 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 VTPTEEHVEGPLPS(1)PVTNGTSPAQLNGGSACSSR 234.02 9.11E-51 364560000 79553 93088 74077 33985 101250 92978 108040 99915 88143 110320 TRUE FALSE FALSE 73976.74551 85711.36786 102761.5983 79118.79751 88550.28088 81507.31969 81007.24927 77166.53563 95783.30621 82695.15394 0.894571713 1.03647389 1.242655626 0.956752527 1.070803749 0.985635987 0.979588832 0.933144591 1.158269882 1 16.33551517 -6.265379492 24.68813536 1.005165707 1.046647475 0.016686447 0.100002282 1217.620988 7629406.236 0.034851846 0.031905245 5.43E-07 6.265379492 0.041481768 VTPTEEHVEGPLPSPVTNGT(ph)SPAQLNGGSACSSR ddPTM_HeLa_A485_30min_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BN50;Q15599-3;H3BUQ9;H3BQS0;Q15599-2;Q15599 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 VTPTEEHVEGPLPSPVTNGT(0.682)S(0.318)PAQLNGGSACSSR 231.35 9.15E-40 251380000 20860 25904 27945 17154 29981 18520 28658 30080 27149 34603 TRUE FALSE FALSE 25500.23503 28933.24747 38283.01839 18091.07958 26995.98637 19489.67856 22534.98419 22702.83284 32597.55527 25977.10892 0.981642534 1.113797827 1.473721287 0.696423903 1.039222126 0.750263573 0.867493925 0.873955331 1.254856935 1 14.66495326 -5.271110001 24.99698487 0.915732608 1.182128289 0.294985221 0.186224256 815.6597957 2108345.64 0.051767887 0.077855163 5.36E-06 5.271110001 0.266395681 VTPTEEHVEGPLPSPVTNGT(ph)SPAQLNGGSACSSR ddPTM_HeLa_A486_30min_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BN50;Q15599-3;H3BUQ9;H3BQS0;Q15599-2;Q15599 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 VTPTEEHVEGPLPS(0.003)PVT(0.016)NGT(0.552)S(0.43)PAQLNGGSACSSR 111.24 9.58E-05 385480000 20749 39024 28166 10710 22911 21696 27432 44447 28874 23072 TRUE FALSE FALSE 19294.60225 35931.59612 39072.62951 24933.42125 20037.28874 19019.36811 20568.22345 34327.38837 31376.82157 17294.62103 1.115641807 2.077616853 2.259235947 1.441686477 1.158585014 1.099727371 1.189284427 1.984859241 1.814253202 1 14.07803578 -5.482937766 22.66019511 1.391557721 1.844669282 0.195613611 0.402735954 294.4135842 167031.9115 0.120156907 0.178165169 3.29E-06 5.482937766 0.453111561 VTPTEEHVEGPLPSPVTNGTS(ph)PAQLNGGSACSSR ddPTM_HeLa_A485_30min_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BN50;Q15599-3;H3BUQ9;H3BQS0;Q15599-2;Q15599 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 VTPTEEHVEGPLPSPVT(0.002)NGT(0.44)S(0.558)PAQLNGGSACSSR 124.79 2.83E-06 323270000 33107 40488 45094 40718 56389 38551 51257 55182 42227 50992 TRUE FALSE FALSE 40471.53793 45222.7194 61776.14712 42942.32124 50774.71317 40569.47075 40305.52322 41648.52798 50701.57157 38280.63284 1.057232729 1.181347226 1.613770268 1.121776681 1.326381238 1.059791015 1.052895948 1.087979087 1.324470569 1 15.22432706 -6.263872135 24.99999673 1.107267804 1.267689923 0.186706244 0.161406342 391.172337 4019825.187 0.056206743 0.051987293 5.45E-07 6.263872135 0.16042212 VTPTKESYTEEIVS(ph)EAESHVSGISR ddPTM_HeLa_A485_30min_R1 1 VTPTKESYTEEIVSEAESHVSGISR 25 1 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 VT(0.001)PT(0.001)KES(0.005)YT(0.026)EEIVS(0.964)EAES(0.002)HVSGISR 79.898 0.003876 40346000 8297.6 24773 18048 4091.5 29784 24589 24944 59031 15837 11175 TRUE FALSE FALSE 10143.37249 27669.98685 24724.70624 4315.008285 26818.60038 25876.44202 19614.51063 44553.55469 19015.34063 8389.278161 1.209087635 3.298255979 2.947179217 0.514347981 3.19677091 3.084465853 2.338045092 5.310773328 2.266624168 1 13.03433097 VTQDELK ddPTM_HeLa_A485_30min_R1 1 VTQDELK 7 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 110.12 0.016325 0 54265 73551 77137 37563 150220 32007 84105 60143 59823 122780 FALSE FALSE TRUE 66336.06204 82152.14964 105673.1862 39614.97158 135263.5693 33682.83703 66135.27968 45392.83495 71828.92737 92173.2056 0.719689216 0.891280162 1.146463178 0.429788368 1.467493383 0.36542981 0.7175109 0.492473216 0.77928208 1 16.49205981 VTQDFTHPPDQS(ph)PLRPDAANR ddPTM_HeLa_A485_30min_R1 4 VTQDFTHPPDQSPLRPDAANR 21 1 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-3 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR ;;; 222.05 8.11E-36 1154890000 251388 254452 287477 277290 338732 228878 282730 244222 283371 358525 TRUE FALSE FALSE 307308.3933 284207.948 393826.7052 292437.6506 305006.6527 240861.6982 222322.4258 184326.1716 340240.9605 269151.3157 1.141768126 1.055941143 1.46321672 1.086517634 1.13321628 0.894893259 0.826012777 0.684842172 1.264125199 1 18.03805795 -6.120745578 2.586963276 0.906241438 1.19529408 0.324484488 0.17301403 0.317543695 4.146428412 0.061889548 0.062627931 7.57E-07 6.120745578 0.289052642 VTQDFTHPPDQS(ph)PLRPDAANR ddPTM_HeLa_A486_30min_R1 5 VTQDFTHPPDQSPLRPDAANR 21 1 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-3 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR;VTQDFTHPPDQS(1)PLRPDAANR ;;;; 181.37 2.52E-19 1130960000 427566 484567 408913 159580 497805 490788 501751 506187 443423 509628 TRUE FALSE FALSE 397595.8314 446168.1462 567255.0647 371510.3047 435365.6551 430239.5665 376207.5928 390939.2701 481859.2627 382013.8317 1.040789098 1.167937151 1.484907136 0.972504852 1.139659402 1.126240808 0.984800972 1.023364176 1.26136601 1 18.54326535 VTQDFTHPPDQS(ph)PLRPDAANRDFLSQQGK ddPTM_HeLa_A485_30min_R1 1 VTQDFTHPPDQSPLRPDAANRDFLSQQGK 29 2 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-3 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 VTQDFTHPPDQS(1)PLRPDAANRDFLSQQGK 223.86 6.43E-39 532530000 162790 182480 123100 130380 238980 210940 271340 332290 136450 198340 TRUE FALSE FALSE 199002.0739 203819.4486 168639.8126 137502.3293 215186.3121 221984.4922 213365.9924 250795.3565 163834.2634 148897.4882 1.336503902 1.368857535 1.132590044 0.923469771 1.445197731 1.490854513 1.432972409 1.684349142 1.100315831 1 17.18395989 VTQDFTHPPDQS(ph)PLRPDAANRDFLSQQGK ddPTM_HeLa_A486_30min_R1 3 VTQDFTHPPDQSPLRPDAANRDFLSQQGK 29 2 Q9BYX2-4;Q9BYX2-2;Q9BYX2;Q9BYX2-3 Q9BYX2-4 TBC1D2 TBC1 domain family member 2A 1 0 VTQDFTHPPDQS(1)PLRPDAANRDFLSQQGK;VTQDFTHPPDQS(1)PLRPDAANRDFLSQQGK;VTQDFTHPPDQS(1)PLRPDAANRDFLSQQGK ;; 256.9 1.66E-63 1520280000 804150 704070 476807 313640 900820 679310 957460 974200 556060 1059560 TRUE FALSE FALSE 747783.2376 648276.929 661439.4397 730169.7705 787830.7558 595503.6389 717893.381 752395.9266 604259.7285 794239.2794 0.941508758 0.816223707 0.832796182 0.919332233 0.991931243 0.74977863 0.903875444 0.94731644 0.760803128 1 19.59921419 -10.21042838 3.656698639 1.000158307 0.875057388 0.192615041 0.077513618 75562446.52 107658758.1 134604.8447 0.019494287 6.16E-11 10.21042838 -0.125100919 VTQGAAS(ph)PGHGIQEK ddPTM_HeLa_A485_30min_R1 2 VTQGAASPGHGIQEK 15 0 G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6;Q9HB58-4 G5E9C0 SP110 Sp110 nuclear body protein 1 0 VT(0.003)QGAAS(0.997)PGHGIQEK;VT(0.016)QGAAS(0.984)PGHGIQEK ; 146.97 5.26E-08 631450000 702320 543180 518350 916440 827000 592340 807490 603650 639930 1243460 TRUE FALSE FALSE 858548.661 606700.176 710109.2353 966502.7967 744660.9762 623354.0065 634963.1649 455603.891 768358.0812 933488.3062 0.919720853 0.649927987 0.760705014 1.035366796 0.797718591 0.667768415 0.680204734 0.488065986 0.823104131 1 19.83227242 -6.147989802 5.383262959 0.697197428 0.832311934 0.077880281 0.154936196 0.465426484 19.02199971 0.05114589 0.051247386 7.11E-07 6.147989802 0.135114506 VTQGAAS(ph)PGHGIQEK ddPTM_HeLa_A486_30min_R1 2 VTQGAASPGHGIQEK 15 0 G5E9C0;Q9HB58-2;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6;Q9HB58-4 G5E9C0 SP110 Sp110 nuclear body protein 1 0 VTQGAAS(1)PGHGIQEK;VTQGAAS(1)PGHGIQEK ; 171.47 2.11E-12 844240000 831580 988920 541420 330690 903400 982370 1000090 1024410 835450 1092850 TRUE FALSE FALSE 773290.5363 910554.3776 751072.3237 769863.0321 790087.1481 861175.1774 749856.9041 791174.2057 907867.4787 819193.2467 0.943965956 1.111525737 0.916843891 0.939781956 0.964469802 1.051247896 0.915360212 0.965796787 1.108245804 1 19.6438443 -7.739737434 24.9440735 1.054122947 0.977540194 0.196826942 0.062972681 324.0327595 372443.6876 0.041871094 0.015794388 1.82E-08 7.739737434 -0.076582753 VTQHES(ph)DNENEIQIQNK ddPTM_HeLa_A485_30min_R1 5 VTQHESDNENEIQIQNK 17 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 VTQHES(1)DNENEIQIQNK;VT(0.001)QHES(0.999)DNENEIQIQNK;VTQHES(1)DNENEIQIQNK;VT(0.091)QHES(0.909)DNENEIQIQNK;VT(0.035)QHES(0.965)DNENEIQIQNK ;;;; 331.02 1.21E-91 5189700000 2834020 2851720 2439960 3595410 3840040 2975290 4223350 4266140 2804970 4783270 TRUE FALSE FALSE 3464437.972 3185203.847 3342602.739 3791818.144 3457712.134 3131071.584 3320996.771 3219862.476 3367901.75 3590888.819 0.964785641 0.887023801 0.930856651 1.055955318 0.962912613 0.871948908 0.924839765 0.896675625 0.937901985 1 21.77590955 VTQHES(ph)DNENEIQIQNK ddPTM_HeLa_A486_30min_R1 4 VTQHESDNENEIQIQNK 17 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 VT(0.052)QHES(0.948)DNENEIQIQNK;VT(0.133)QHES(0.867)DNENEIQIQNK;VT(0.001)QHES(0.999)DNENEIQIQNK;VT(0.005)QHES(0.995)DNENEIQIQNK ;;; 330.93 1.22E-91 4903100000 2267617 2390085 1486009 706461 2281370 2339500 2674330 2540780 1942587 2255960 TRUE FALSE FALSE 2108668.758 2200685.96 2061431.482 1644676.911 1995219.302 2050876.276 2005184.348 1962299.859 2110972.005 1691052.932 1.246956094 1.30137024 1.219022446 0.972575653 1.179868036 1.212780651 1.185760841 1.160401204 1.248318113 1 20.68949039 -5.00596734 24.6800044 1.146520092 1.270671509 0.30417014 0.084159102 293.7349356 1214866.689 0.02223282 0.04397644 9.86E-06 5.00596734 0.124151417 VTQQEKT(ph)PPPRPSPLEAGSDGCEEPK ddPTM_HeLa_A485_30min_R1 1 VTQQEKTPPPRPSPLEAGSDGCEEPK 26 2 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 VT(0.001)QQEKT(0.952)PPPRPS(0.047)PLEAGSDGCEEPK 110.31 0.00040703 141260000 256770 147060 126610 560200 318500 246980 462520 364670 212530 723510 TRUE FALSE FALSE 313887.6007 164257.3877 173448.3077 590802.3075 286789.0217 259911.4909 363698.8236 275234.1107 255182.8216 543152.2722 0.577899821 0.302414988 0.31933643 1.087728686 0.528008509 0.478524171 0.669607479 0.506734713 0.469818198 1 19.05099719 -11.26959207 2.262770328 2.832273744 0.550369823 0.297393051 0.208000609 10227487.81 1524610.86 95939227.08 0.053250946 5.38E-12 11.26959207 -2.281903921 VTQQEKT(ph)PPPRPSPLEAGSDGCEEPK ddPTM_HeLa_A486_30min_R1 1 VTQQEKTPPPRPSPLEAGSDGCEEPK 26 2 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 VT(0.022)QQEKT(0.963)PPPRPS(0.015)PLEAGSDGCEEPK 102.58 0.001014 442510000 87843 95906 41433 97244 100240 147010 212080 200550 68482 212330 TRUE FALSE FALSE 81685.65932 88306.05928 57476.96721 226388.9464 87666.9645 128873.4009 159015.3408 154889.143 74418.0749 159161.186 0.513226003 0.554821571 0.361124271 1.422387909 0.550806178 0.809703698 0.999083664 0.973159015 0.467564215 1 17.28012903 VTQVDGNS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 VTQVDGNSPVR 11 0 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 1 0 VTQVDGNS(1)PVR 114.21 0.00040659 0 208090 216490 229960 235970 291820 239510 285360 250510 225630 324120 TRUE FALSE FALSE 254378.9026 241806.6223 315031.7734 248860.4436 262765.3762 252050.3732 224390.5048 189072.0297 270911.8714 243322.849 1.045437795 0.993768663 1.294706908 1.022758219 1.079904239 1.035868083 0.922192493 0.777041821 1.113384429 1 17.89251228 -6.590060675 3.281330352 0.93499898 1.088785214 0.244126752 0.109158204 0.319120546 6.969664079 0.044132698 0.033670247 2.57E-07 6.590060675 0.153786234 VTQVDGNS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 VTQVDGNSPVR 11 0 B0YIW6;P48444;P48444-2 B0YIW6 ARCN1 Coatomer subunit delta 1 0 VTQVDGNS(1)PVR;VTQVDGNS(1)PVR ; 169.54 3.80E-08 426940000 413110 517370 413510 189145 531880 517910 547200 550430 465090 562460 TRUE FALSE FALSE 384153.1223 476371.717 573632.1462 440339.1189 465166.6508 454015.5299 410284.7723 425109.1048 505404.3757 421616.355 0.911143787 1.129870109 1.360554778 1.04440711 1.103293659 1.076845157 0.973123475 1.00828419 1.19873048 1 18.68557131 -5.938156142 1.933014691 1.04820329 1.132223511 0.053562681 0.118587434 0.933661308 7.100155796 0.044739857 0.051363259 1.15E-06 5.938156142 0.08402022 VTRPQELDLTHQGQPITEEEQAAK(ac)LK ddPTM_HeLa_A486_30min_R1 1 VTRPQELDLTHQGQPITEEEQAAKLK 26 2 Q70E73;C9J164;Q70E73-5;Q70E73-2 Q70E73 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 0 1 VTRPQELDLTHQGQPITEEEQAAK(1)LK 175.48 2.80E-27 26911000 20261 28552 18933 9999.4 26506 29460 29136 30126 25546 28149 FALSE TRUE FALSE 18840.80853 26289.43554 26264.36464 23279.10854 23181.37032 25825.52473 21845.86463 23266.96745 27760.34785 21100.30718 0.892916315 1.245926673 1.244738497 1.103259225 1.098627149 1.223940699 1.035333962 1.102683826 1.315637143 1 14.36497638 -4.248263731 24.35795444 1.153719526 0.892916072 0.392193874 0.096832762 1589.427888 2938319.812 0.023527304 0.423537148 5.65E-05 4.248263731 -0.260803454 VTRS(ph)PPTQVAISSDSAR ddPTM_HeLa_A485_30min_R1 4 VTRSPPTQVAISSDSAR 17 1 Q6ZUT6;H0YM82;Q6ZUT6-3;Q6ZUT6-4 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 0 VT(0.162)RS(0.837)PPT(0.001)QVAISSDSAR;VT(0.15)RS(0.849)PPT(0.001)QVAISSDSAR;VT(0.003)RS(0.997)PPTQVAISSDSAR;VT(0.051)RS(0.946)PPT(0.002)QVAISSDSAR ;;; 178.45 8.19E-18 3391700000 354801 476035 409784 483380 530384 498285 654610 639760 412031 599820 TRUE FALSE FALSE 433725.2584 531703.1523 561380.1541 509785.8254 477577.1067 524374.4321 514747.2258 482857.8569 494721.8423 450295.9129 0.963200522 1.180786094 1.246691649 1.13211293 1.060585035 1.164510752 1.143131019 1.072312324 1.098659411 1 18.78051386 -8.199316009 0.845012407 1.000536282 1.133154985 0.204035137 0.072342589 1.371812471 2.044645865 0.07171887 0.025142384 6.32E-09 8.199316009 0.132618703 VTRS(ph)PPTQVAISSDSAR ddPTM_HeLa_A486_30min_R1 2 VTRSPPTQVAISSDSAR 17 1 Q6ZUT6;H0YM82;Q6ZUT6-3;Q6ZUT6-4 Q6ZUT6 C15orf52 Uncharacterized protein C15orf52 1 0 VT(0.001)RS(0.997)PPT(0.001)QVAISSDSAR;VT(0.035)RS(0.964)PPT(0.001)QVAISSDSAR ; 154.1 1.43E-08 2047720000 348220 390840 311580 121772 498330 328760 433730 461480 300100 375570 TRUE FALSE FALSE 323811.5762 359868.415 432232.1204 283491.37 435824.8047 288200.9338 325206.1665 356411.078 326112.9096 281524.8274 1.150206108 1.27828305 1.535325052 1.006985326 1.548086571 1.023714094 1.155159811 1.266002296 1.158380639 1 18.10290263 -6.303724423 24.99957806 1.139433324 1.29873669 0.229444041 0.165893551 842.0820718 497849.4177 0.056069221 0.049448653 4.97E-07 6.303724423 0.159303366 VTS(ph)GGVSESPSGFSK ddPTM_HeLa_A485_30min_R1 1 VTSGGVSESPSGFSK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 VT(0.028)S(0.967)GGVS(0.004)ESPSGFSK 172.91 2.29E-12 255820000 364400 374940 263630 390850 469570 402780 482420 504100 328300 539670 TRUE FALSE FALSE 445459.5228 418785.9715 361157.7076 412201.1458 422817.962 423868.938 379347.026 380468.6846 394186.7987 405140.2009 1.09951943 1.033681601 0.891438832 1.017428399 1.043633688 1.046227792 0.936335188 0.939103757 0.972963922 1 18.62806172 -6.766175915 24.99865447 0.957026026 1.017362353 0.235138479 0.052198028 195.8099944 1033438.292 0.022750687 0.015906995 1.71E-07 6.766175915 0.060336327 VTS(ph)GGVSESPSGFSK ddPTM_HeLa_A486_30min_R1 1 VTSGGVSESPSGFSK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 VT(0.017)S(0.983)GGVSESPSGFSK 132.44 1.52E-05 392180000 466640 426970 267190 183950 469290 515340 599390 588260 323820 607650 TRUE FALSE FALSE 433930.9457 393135.3422 370653.1236 428244.8963 410427.2722 451762.5904 449416.2823 454326.0396 351888.9783 455490.4849 0.952667421 0.863103304 0.813745042 0.940184067 0.901066621 0.991815648 0.98666448 0.997443536 0.77254957 1 18.79706139 -5.408722679 10.7844148 0.943908556 0.875176763 0.146587239 0.071595739 0.879090861 78.13128513 0.020086412 0.029796663 3.90E-06 5.408722679 -0.068731793 VTS(ph)PEKAEEAK ddPTM_HeLa_A485_30min_R1 1 VTSPEKAEEAK 11 1 P56211;H3BMD8;P56211-2;H3BTD3 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 VT(0.02)S(0.98)PEKAEEAK 150.34 3.11E-07 670210000 566510 303750 166920 1229900 384410 351990 722170 516000 302400 1438800 TRUE FALSE FALSE 692528.1951 339270.9202 228670.6541 1297086.323 346136.7907 370419.6521 567872.4799 389450.1909 363088.9062 1080133.639 0.641150474 0.314100874 0.211705891 1.20085726 0.320457375 0.342938724 0.525742796 0.360557413 0.336151836 1 20.04277839 -10.6282396 4.042550046 1.016597073 0.471686714 0.256397424 0.269428807 0.040429076 0.00371793 0.261692279 0.063015938 2.35E-11 10.6282396 -0.544910359 VTS(ph)PTKV ddPTM_HeLa_A485_30min_R1 6 VTSPTKV 7 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 VT(0.008)S(0.991)PT(0.002)KV;VT(0.001)S(0.999)PTKV;VT(0.001)S(0.986)PT(0.012)KV;VT(0.038)S(0.959)PT(0.002)KV;VTS(0.998)PT(0.001)KV;VT(0.004)S(0.994)PT(0.001)KV ;;;;; 149.57 0.0025823 45121200000 75203800 51192200 39108400 109510900 70017800 52672700 82909000 62306300 54575400 132208100 TRUE FALSE FALSE 91932625.86 57178682.48 53576224.6 115493203.2 63046581.98 55430561.12 65194814.85 47025582.23 65528182.18 99251053.78 0.926263474 0.576101515 0.539805096 1.163647123 0.635223301 0.558488389 0.656867735 0.473804362 0.660226564 1 26.56457908 -4.243939079 22.99957615 0.681885265 0.926264087 0.097197134 0.206510347 2777.172909 3649690.725 0.051525017 1.331573068 5.70E-05 4.243939079 0.244378822 VTS(ph)PTKV ddPTM_HeLa_A486_30min_R1 4 VTSPTKV 7 1 E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682;Q05682-5;Q05682-4 E7EX44;Q05682;Q05682-5 CALD1 Caldesmon 1 0 VT(0.003)S(0.996)PT(0.001)KV;VT(0.003)S(0.996)PT(0.002)KV;VTS(0.993)PT(0.007)KV;VTS(0.998)PT(0.002)KV ;;; 112.41 0.0074745 33925400000 21478100 24908000 12739500 11099800 18810100 26281800 32367100 28511400 18374800 29728800 TRUE FALSE FALSE 19972596.1 22934199.37 17672575.58 25840895.35 16450761.86 23039418.73 24268509.24 22019976.62 19967542.46 22284514.98 0.896254467 1.029154074 0.793042864 1.159589759 0.738214939 1.033875709 1.089030175 0.98812905 0.896027689 1 24.40953823 VTS(ph)PTTYVLDEDEPR ddPTM_HeLa_A485_30min_R1 1 VTSPTTYVLDEDEPR 15 0 J3KNS1;Q9UPW5-2;Q9UPW5;Q9UPW5-3 J3KNS1 AGTPBP1 Cytosolic carboxypeptidase 1 1 0 VT(0.146)S(0.85)PT(0.003)T(0.001)YVLDEDEPR 94.717 0.00091906 35812000 47613 55423 56787 49812 77141 52813 68122 60485 50408 77442 TRUE FALSE FALSE 58204.34759 61904.23773 77794.8744 52533.10343 69460.57118 55578.20702 53567.17819 45650.95891 60524.42323 58137.13461 1.001156111 1.064796849 1.338127084 0.903606684 1.19477115 0.955984628 0.921393504 0.785228911 1.041063059 1 15.82717235 -6.416118374 5.881480648 0.921570418 1.100304394 0.289893974 0.124259311 0.280864098 13.10033819 0.043157384 0.037781047 3.84E-07 6.416118374 0.178733975 VTS(ph)PTTYVLDEDEPR ddPTM_HeLa_A486_30min_R1 1 VTSPTTYVLDEDEPR 15 0 J3KNS1;Q9UPW5-2;Q9UPW5;Q9UPW5-3 J3KNS1 AGTPBP1 Cytosolic carboxypeptidase 1 1 0 VT(0.048)S(0.951)PT(0.001)TYVLDEDEPR 233.97 5.41E-41 33017000 54662 62411 46834 26366 63165 57355 66716 59851 47398 55597 TRUE FALSE FALSE 50830.47607 57465.32506 64969.37906 61381.38046 55242.25671 50279.12324 50022.95115 46224.23384 51506.4968 41675.14932 1.219683118 1.378887082 1.558947721 1.472853282 1.325544302 1.206453343 1.200306465 1.109155806 1.235904313 1 15.34689975 -6.257048779 1.994526364 1.146491986 1.415496338 0.607308857 0.099267558 0.244219266 1.909244258 0.041599473 0.038293059 5.53E-07 6.257048779 0.269004352 VTS(ph)TQQQTR ddPTM_HeLa_A485_30min_R1 1 VTSTQQQTR 9 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 VT(0.02)S(0.975)T(0.005)QQQTR 91.093 0.0023664 0 275850 377700 257100 331770 295750 345410 321390 492840 388390 403080 TRUE FALSE FALSE 337211.8808 421868.7294 352211.9888 349893.755 266304.0916 363495.1335 252722.401 371970.2173 466336.3105 302599.5741 1.114383197 1.394148457 1.163954014 1.156292953 0.880054416 1.201241391 0.83517104 1.229248978 1.541100353 1 18.20705043 -4.987864952 24.43952729 1.115203455 1.260462248 0.06649788 0.197403539 461.1849833 928790.8272 0.052232613 0.108597992 1.03E-05 4.987864952 0.145258793 VTS(ph)TQQQTR ddPTM_HeLa_A486_30min_R1 1 VTSTQQQTR 9 0 A0A1B0GTU4;F5GZ78;P49023;P49023-2;A0A1B0GU60;A0A1B0GV30;P49023-3;P49023-4 A0A1B0GTU4;P49023-3;P49023-4 PXN Paxillin 1 0 VT(0.005)S(0.991)T(0.004)QQQTR 113.95 0.00075256 282240000 424980 230990 414740 151180 301210 635340 374850 335820 479620 411720 TRUE FALSE FALSE 395191.0966 212685.5111 575338.4351 351954.6802 263429.4331 556958.2105 281058.5652 259361.1169 521193.8478 308622.6322 1.280499404 0.689144246 1.864213363 1.140404635 0.853564858 1.804657703 0.910686826 0.840382687 1.688773905 1 18.23548434 -10.39350356 3.507223341 0.998452734 1.215295212 0.027055142 0.405402829 187416702.3 141180286.6 2735154.688 0.097138283 4.04E-11 10.39350356 0.216842477 VTSLANLIS(ph)PVR ddPTM_HeLa_A485_30min_R1 1 VTSLANLISPVR 12 0 Q7Z628-2;Q7Z628 Q7Z628-2 NET1 Neuroepithelial cell-transforming gene 1 protein 1 0 VTSLANLIS(1)PVR 77.1 0.007979 94497000 28328 38035 39066 48121 45952 35766 42699 55237 41164 47565 TRUE FALSE FALSE 34629.46587 42482.86239 53518.13907 50749.72838 41376.85753 37638.65246 33576.00983 41690.03914 49425.23722 35707.92087 0.969797878 1.189732176 1.498774999 1.421245683 1.15875852 1.054070121 0.940295851 1.167529168 1.38415332 1 15.12395651 -5.983468282 23.6643361 1.108822149 1.281697826 0.162589699 0.171706228 242.6418481 347325.7715 0.057383665 0.065045129 1.04E-06 5.983468282 0.172875677 VTSLANLIS(ph)PVR ddPTM_HeLa_A486_30min_R1 1 VTSLANLISPVR 12 0 Q7Z628-2;Q7Z628 Q7Z628-2 NET1 Neuroepithelial cell-transforming gene 1 protein 1 0 VTSLANLIS(1)PVR 104.86 0.00058337 140070000 42994 44521 38178 32031 53318 49123 51642 50928 41458 59423 TRUE FALSE FALSE 39980.34262 40992.99382 52961.54404 74569.78676 46630.35927 43062.70371 38720.62539 39332.80615 45051.61282 44543.09402 0.897565459 0.92029965 1.188995628 1.674104334 1.046859458 0.966764987 0.869284594 0.883028155 1.011416333 1 15.44291415 -5.995895069 24.99999565 0.942078809 1.179572095 0.213805347 0.202227304 199.533615 1215189.991 0.069333525 0.078288278 1.01E-06 5.995895069 0.237493286 VTSLGK(ac)DWHRPCLK ddPTM_HeLa_A486_30min_R1 1 VTSLGKDWHRPCLK 14 2 P50238 P50238 CRIP1 Cysteine-rich protein 1 0 1 VTSLGK(1)DWHRPCLK 106.52 0.0015486 13975000 18714 27751 38324 2573.1 37934 18663 18218 20886 27398 14011 FALSE TRUE FALSE 17402.24524 25551.90969 53164.07915 5990.306837 33175.964 16360.54881 13659.66371 16130.71374 29772.8807 10502.5544 1.656953592 2.432923336 5.062014164 0.570366656 3.158847146 1.557768537 1.300603947 1.535884807 2.834822802 1 13.35845264 -5.29276901 24.99995187 1.767832959 2.98886209 0.24112633 1.086007543 1008.480248 804729.8593 0.301824511 0.447725731 5.10E-06 5.29276901 1.221029132 VTSLRS(ph)PGASVSSSLTSLCSSSSDPAPSDR ddPTM_HeLa_A485_30min_R1 1 VTSLRSPGASVSSSLTSLCSSSSDPAPSDR 30 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VT(0.249)S(0.219)LRS(0.528)PGAS(0.003)VS(0.001)SSLTSLCSSSSDPAPSDR 111.42 5.79E-05 292590000 53986 93901 77986 56671 126850 84500 117550 186640 78837 84897 TRUE FALSE FALSE 65994.99945 104881.9051 106836.2667 59766.79323 114220.3686 88924.28934 92434.4822 140866.2474 94658.86276 63733.74031 1.035479781 1.645626078 1.676290551 0.937757504 1.792149151 1.395246676 1.450322572 2.210230353 1.485223718 1 15.95976971 VTSLRS(ph)PGASVSSSLTSLCSSSSDPAPSDR ddPTM_HeLa_A486_30min_R1 1 VTSLRSPGASVSSSLTSLCSSSSDPAPSDR 30 1 Q9P206-2;Q9P206;Q9P206-3 Q9P206-2 KIAA1522 Uncharacterized protein KIAA1522 1 0 VT(0.122)S(0.104)LRS(0.741)PGAS(0.006)VS(0.006)S(0.011)S(0.011)LTSLCSSSSDPAPSDR 176.86 1.86E-15 185050000 56043 52610 64399 27512 139990 62486 104390 103920 49206 67656 TRUE FALSE FALSE 52114.67511 48440.992 89336.01747 64049.32638 122431.1488 54777.11263 78270.51788 80259.68456 53471.2157 50714.49723 1.027609026 0.955170506 1.761547927 1.262939196 2.414125261 1.080107575 1.543355887 1.582578729 1.054357602 1 15.63011059 -7.776052921 20.75737579 1.027172883 1.463318126 0.149438995 0.406219182 68.55979868 97358.58044 0.380860259 0.101328996 1.67E-08 7.776052921 0.436145244 VTSSITIYPSDSS(ph)SPR ddPTM_HeLa_A486_30min_R1 1 VTSSITIYPSDSSSPR 16 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 VTSSITIYPSDS(0.134)S(0.433)S(0.433)PR 215.48 1.26E-33 270120000 338420 392360 366530 142160 474500 363530 444380 464790 365030 363940 TRUE FALSE FALSE 314698.5056 361267.9646 508460.232 330955.6644 414983.7855 318681.3647 333191.4238 358967.4633 396671.0943 272807.0551 1.153557064 1.32426181 1.863808954 1.213149213 1.521162219 1.16815661 1.221344601 1.315829105 1.454035322 1 18.05752143 -6.264392492 24.77496564 1.250954415 1.42383543 0.154843579 0.211320639 496.741619 4167364.631 0.073162183 0.067285565 5.44E-07 6.264392492 0.172881015 VTSSITIYPSDSSS(ph)PR ddPTM_HeLa_A485_30min_R1 2 VTSSITIYPSDSSSPR 16 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 VTSSITIYPSDS(0.043)S(0.108)S(0.849)PR;VTSSITIYPS(0.002)DS(0.227)S(0.227)S(0.544)PR ; 298.93 1.18E-67 396850000 366080 348090 387440 404900 548960 375460 409300 320540 407120 583250 TRUE FALSE FALSE 447513.233 388796.0975 530770.1787 427018.6617 494303.6149 395118.505 321849.7113 241927.0624 488825.2497 437856.5089 1.022054541 0.887953221 1.212201184 0.975247948 1.128916905 0.902392672 0.735057501 0.552525902 1.116405123 1 18.74009863 -6.483987333 5.508646677 0.813630102 1.040751758 0.233213719 0.163112273 0.246292172 19.65912885 0.057970245 0.049348509 3.28E-07 6.483987333 0.227121656 VTSSITIYPSDSSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VTSSITIYPSDSSSPR 16 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 VTSSITIYPSDS(0.048)S(0.408)S(0.544)PR 265.77 5.44E-51 276310000 383570 456630 402810 168530 506230 446100 459190 467460 384710 407170 TRUE FALSE FALSE 356683.7238 420444.9758 558788.8196 392346.357 442733.913 391064.7176 344295.8052 361029.5626 418056.9726 305211.9818 1.168642599 1.377550689 1.830822029 1.285488056 1.450578416 1.281288878 1.128054682 1.182881355 1.369726608 1 18.21945207 -6.425502173 3.116615593 1.185585043 1.436052114 0.299570208 0.180637644 0.353941552 6.58791696 0.07112242 0.060084877 3.75E-07 6.425502173 0.250467071 VTSSMS(ph)SPSMQPK ddPTM_HeLa_A485_30min_R1 2 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VTSSMS(0.695)S(0.303)PS(0.003)MQPK;VT(0.001)S(0.001)S(0.002)MS(0.537)S(0.395)PS(0.065)MQPK ; 194.39 7.09E-18 1417038000 2591670 2571570 1877060 3125300 3071520 3187500 4221550 4368290 2485030 4700810 TRUE FALSE FALSE 3168178.05 2872292.742 2571462.605 3296027.225 2765708.684 3354392.571 3319581.356 3296960.028 2983752.727 3528984.579 0.897759109 0.81391479 0.728669267 0.933987427 0.783712318 0.950526276 0.940661905 0.934251753 0.845498942 1 21.7508217 -6.271072577 24.83493083 0.930483146 0.830594456 0.392272836 0.06374993 682.2064891 1758762.217 0.021885197 0.019538422 5.36E-07 6.271072577 -0.099888691 VTSSMS(ph)SPSMQPK ddPTM_HeLa_A486_30min_R1 1 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VT(0.069)S(0.069)S(0.069)MS(0.401)S(0.323)PS(0.069)MQPK 42.336 0.010852 0 95416 94180 62160 36628 99522 111080 126890 122280 88960 122770 TRUE FALSE FALSE 88727.83113 86716.8338 86230.0167 85271.83508 87039.02275 97376.07898 95140.77989 94439.51335 96671.12443 92027.5929 0.964143778 0.942291666 0.937001762 0.926589867 0.945792669 1.058118287 1.033828843 1.026208666 1.050458035 1 16.48977887 -6.250962941 24.33987525 1.035367437 0.941852353 0.877782679 0.01688648 151.6322441 352286.6284 0.005435044 0.005376611 5.61E-07 6.250962941 -0.093515084 VTSSMSS(ph)PSMQPK ddPTM_HeLa_A485_30min_R1 7 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VTSSMS(0.366)S(0.625)PS(0.009)MQPK;VTSSMS(0.005)S(0.99)PS(0.005)MQPK;VTSSMSS(0.998)PS(0.001)MQPK;VTSSMSS(0.999)PS(0.001)MQPK;VTSSMS(0.215)S(0.571)PS(0.215)MQPK;VTSSMS(0.371)S(0.629)PS(0.001)MQPK;VTSSMS(0.001)S(0.996)PS(0.003)MQPK ;;;;;; 311.99 2.44E-68 4048640000 6118810 6132310 4354070 7121480 7287580 7308860 9641180 10071840 5635870 10972400 TRUE FALSE FALSE 7479918.175 6849430.31 5964821.681 7510508.42 6562002.947 7691540.608 7581263.132 7601705.448 6766937.414 8237182.612 0.908067543 0.831525855 0.724133719 0.911781221 0.796631962 0.933758661 0.920370895 0.922852607 0.821511156 1 22.97371954 -6.268770263 24.72052178 0.914918969 0.83243676 0.303341218 0.064373384 655.2618176 2209606.174 0.022021726 0.019823228 5.39E-07 6.268770263 -0.082482208 VTSSMSS(ph)PSMQPK ddPTM_HeLa_A486_30min_R1 9 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VTSSMS(0.226)S(0.769)PS(0.005)MQPK;VTSSMS(0.001)S(0.993)PS(0.006)MQPK;VTSSMS(0.004)S(0.939)PS(0.057)MQPK;VTSSMS(0.047)S(0.947)PS(0.006)MQPK;VTSSMS(0.001)S(0.999)PSMQPK;VTSSMS(0.063)S(0.934)PS(0.002)MQPK;VTS(0.001)S(0.007)MS(0.149)S(0.707)PS(0.136)MQPK;VTSSMS(0.162)S(0.675)PS(0.163)MQPK;VTSSMS(0.027)S(0.93)PS(0.043)MQPK ;;;;;;;; 302.73 5.38E-58 4865010000 7171200 7259300 4373050 3100386 7701780 7775350 9141020 8857530 5905150 9888170 TRUE FALSE FALSE 6668535.912 6684046.63 6066412.074 7217855.293 6735750.936 6816106.371 6853840.112 6840863.778 6417013.157 7412107.871 0.899681444 0.901774063 0.818446275 0.973792532 0.908749718 0.919590822 0.924681647 0.922930953 0.865747405 1 22.82145245 VTSSVPLPSGSTS(ph)SPGR ddPTM_HeLa_A485_30min_R1 1 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 VTSSVPLPS(0.001)GS(0.002)T(0.001)S(0.498)S(0.498)PGR 121.99 3.19E-05 857090000 314970 388480 480050 426350 568880 376030 493470 371080 453600 578540 TRUE FALSE FALSE 385033.9899 433909.3567 657640.4715 449640.4209 512240.3097 395718.3493 388036.1032 280072.0482 544633.3593 434320.6252 0.886520159 0.999053076 1.514181997 1.03527301 1.179405904 0.911120325 0.893432365 0.644850905 1.253989168 1 18.72840094 -6.268703072 23.45718924 0.915528819 1.132878362 0.155415672 0.20764168 408.6582226 1319705.013 0.072472062 0.065315614 5.39E-07 6.268703072 0.217349543 VTSSVPLPSGSTS(ph)SPGR ddPTM_HeLa_A486_30min_R1 1 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 VTSSVPLPS(0.088)GS(0.055)T(0.055)S(0.401)S(0.401)PGR 122.34 2.80E-05 202670000 200460 245860 199940 82015 252220 212510 237040 220280 200700 201880 TRUE FALSE FALSE 186408.7892 226377.1582 277362.1226 190935.0648 220584.2157 186292.6768 177730.0848 170127.0527 218096.8376 151327.934 1.231820089 1.495937678 1.83285475 1.261730467 1.457656957 1.2310528 1.174469777 1.124227684 1.441219951 1 17.2073188 -6.130707036 1.536315968 1.191047025 1.494742928 0.333051289 0.184130665 0.465506575 2.208218697 0.077837821 0.078148384 7.40E-07 6.130707036 0.303695902 VTSSVPLPSGSTSS(ph)PGR ddPTM_HeLa_A485_30min_R1 4 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 VTSSVPLPSGSTS(0.006)S(0.994)PGR;VTSSVPLPSGSTS(0.001)S(0.999)PGR;VTSSVPLPSGSTSS(1)PGR;VTSSVPLPSGSTS(0.108)S(0.892)PGR ;;; 299.38 1.44E-68 1638610000 1316489 1467630 1791056 1587180 2230602 1401994 1800562 1521160 1670530 2192790 TRUE FALSE FALSE 1609337.436 1639256.562 2453642.146 1673883.624 2008515.433 1475400.238 1415857.219 1148093.125 2005790.048 1646167.808 0.977626599 0.995801615 1.490517634 1.016836568 1.220115849 0.896263571 0.860092885 0.697433833 1.218460255 1 20.65067998 -6.270956736 24.24237449 0.910892377 1.144769477 0.231024888 0.185097591 616.95785 1571494.134 0.064288384 0.057466511 5.36E-07 6.270956736 0.2338771 VTSSVPLPSGSTSS(ph)PGR ddPTM_HeLa_A486_30min_R1 5 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 VTSSVPLPS(0.03)GS(0.006)T(0.005)S(0.064)S(0.895)PGR;VTSSVPLPSGSTS(0.001)S(0.999)PGR;VTSSVPLPSGSTS(0.001)S(0.999)PGR;VTSSVPLPSGSTS(0.001)S(0.999)PGR;VTSSVPLPS(0.022)GS(0.027)T(0.027)S(0.158)S(0.765)PGR ;;;; 329.16 1.88E-91 2627510000 2247640 2777250 2225520 856473 2925130 2492280 2742680 2772010 2235520 2381450 TRUE FALSE FALSE 2090092.043 2557170.595 3087300.945 1993912.428 2558232.92 2184807.833 2056432.455 2140883.836 2429296.674 1785119.419 1.170841581 1.432492733 1.729464658 1.116963048 1.433087833 1.223900099 1.15198593 1.199294463 1.360859474 1 20.76758916 -6.108201138 1.239793392 1.189720553 1.409954249 0.211970124 0.177132333 0.736711194 2.341502773 0.082331026 0.085015568 7.79E-07 6.108201138 0.220233697 VTSTNNMAYNKAPRPFGSVS(ph)SPK ddPTM_HeLa_A485_30min_R1 1 VTSTNNMAYNKAPRPFGSVSSPK 23 2 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 VTSTNNMAYNKAPRPFGS(0.004)VS(0.498)S(0.498)PK 89.773 0.00096297 299700000 100410 166910 79466 72225 156760 220040 309970 503440 84189 99584 TRUE FALSE FALSE 122745.8581 186428.6726 108863.7803 76170.46887 141152.424 231560.9542 243742.3773 379970.5506 101084.9601 74759.54151 1.64187548 2.493710753 1.456185767 1.018872873 1.888085736 3.097410036 3.26035142 5.082569301 1.352134564 1 16.1899701 -6.216322534 4.812167926 3.048429759 1.676826087 0.162304408 1.114686694 0.29510747 16.0135926 0.368776506 0.3613242 6.08E-07 6.216322534 -1.371603672 VTSVGNPTIKPHSVPSHTLPSHPVT(ph)PSSK ddPTM_HeLa_A485_30min_R1 1 VTSVGNPTIKPHSVPSHTLPSHPVTPSSK 29 1 B1ALK7;A0A2R8YG42;Q14155-1;Q14155-5;Q14155-6;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 VTSVGNPTIKPHSVPSHTLPS(0.001)HPVT(0.999)PS(0.001)SK 235.29 3.49E-49 649390000 261560 279570 218870 167910 447890 318490 425570 491440 298090 347220 TRUE FALSE FALSE 319743.1196 312263.2796 299839.1209 177082.4981 403296.499 335165.6439 334643.4929 370913.5695 357913.9288 260664.4441 1.226646468 1.197951184 1.150287765 0.679350414 1.547186462 1.285812666 1.283809512 1.422954215 1.373083045 1 17.99183428 -5.7941704 24.99974675 1.336555565 1.079351975 0.291745046 0.193024967 241.87422 184740.7253 0.059054704 0.066966406 1.61E-06 5.7941704 -0.25720359 VTTEIQLPSQS(ph)PVEEQSPASLSSLR ddPTM_HeLa_A485_30min_R1 4 VTTEIQLPSQSPVEEQSPASLSSLR 25 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 VTTEIQLPSQS(1)PVEEQSPASLSSLR;VTTEIQLPS(0.007)QS(0.993)PVEEQSPASLSSLR;VTTEIQLPS(0.003)QS(0.997)PVEEQSPASLSSLR;VTTEIQLPS(0.001)QS(0.999)PVEEQSPASLSSLR ;;; 201.63 1.62E-28 1096130000 1051700 1342390 1312990 1061930 1709960 1197360 1372660 1470790 1253360 1374010 TRUE FALSE FALSE 1285647.037 1499370.833 1798719.639 1119940.547 1539710.378 1260051.918 1079379.977 1110076.446 1504897.856 1031494.594 1.246392414 1.453590588 1.743799386 1.085745436 1.492698447 1.22157879 1.046423301 1.076182515 1.458948854 1 19.97630483 -6.423854398 4.967728103 1.149285984 1.407218401 0.283112206 0.196611271 0.307953408 12.01268251 0.070671536 0.061426355 3.77E-07 6.423854398 0.257932417 VTTEIQLPSQS(ph)PVEEQSPASLSSLR ddPTM_HeLa_A486_30min_R1 4 VTTEIQLPSQSPVEEQSPASLSSLR 25 0 E9PMS6;A0A0A0MTE2;E9PMT2;Q8WWI1-5;H0Y424;Q8WWI1-3;F8WD26;J3KP06;Q8WWI1-4;Q8WWI1-2;Q8WWI1;E9PMP7 E9PMS6;Q8WWI1-3 LMO7 LIM domain only protein 7 1 0 VTTEIQLPSQS(1)PVEEQSPASLSSLR;VTTEIQLPSQS(1)PVEEQSPASLSSLR;VTTEIQLPSQS(1)PVEEQSPASLSSLR;VTTEIQLPSQS(1)PVEEQSPASLSSLR ;;; 246.53 1.60E-49 1092690000 1079170 1212750 1093090 410868 1432290 1103780 1199060 1247670 974780 1102480 TRUE FALSE FALSE 1003525.756 1116647.273 1516363.722 956521.4681 1252638.833 967606.846 899042.5056 963602.7774 1059274.715 826411.8321 1.214316781 1.351199523 1.834876587 1.157439222 1.515756169 1.170853089 1.087886778 1.166007964 1.281775834 1 19.65650138 -6.324954551 7.058641878 1.146831785 1.419991837 0.353606805 0.184750994 0.314107063 30.07927687 0.064971083 0.057330591 4.73E-07 6.324954551 0.273160052 VTTHIPQT(ph)PVRPETPNRTPSATLSEK ddPTM_HeLa_A485_30min_R1 1 VTTHIPQTPVRPETPNRTPSATLSEK 26 2 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 VT(0.001)T(0.001)HIPQT(0.881)PVRPET(0.118)PNRTPSATLSEK 104.48 0.00059008 965400000 182930 203420 181960 214330 260790 267410 308570 330830 199310 303750 TRUE FALSE FALSE 223622.1474 227208.1995 249274.576 226038.3052 234824.8319 281411.1741 242641.4987 249693.4238 239309.6888 228030.7151 0.980666781 0.996392961 1.093162278 0.991262537 1.029794744 1.234093284 1.064073753 1.094999082 1.04946252 1 17.79886864 -6.030961807 24.99856936 1.097269266 1.018441591 0.232965892 0.063094899 917.5860068 740857.3195 0.020443147 0.020466489 9.31E-07 6.030961807 -0.078827675 VTTHIPQTPVRPET(ph)PNRTPSATLSEK ddPTM_HeLa_A486_30min_R1 1 VTTHIPQTPVRPETPNRTPSATLSEK 26 2 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 VTTHIPQT(0.009)PVRPET(0.977)PNRT(0.009)PS(0.002)AT(0.002)LSEK 117.88 0.00011451 560940000 263040 240730 167270 100520 268320 254480 307010 298250 213850 312550 TRUE FALSE FALSE 244602.2543 221653.6781 232041.4236 234015.64 234664.8036 223084.845 230192.8508 230344.9858 232386.6902 234285.4456 1.04403521 0.946083857 0.990421846 0.998848389 1.001619213 0.952192503 0.982531587 0.983180945 0.991895547 1 17.83790781 VTTHPLAK ddPTM_HeLa_A485_30min_R1 2 VTTHPLAK 8 0 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 85.212 0.016838 68973000 121028 140978 117811 137412 179967 159934 198873 221180 144960 202116 FALSE FALSE TRUE 147950.2611 157464.1508 161394.1914 144918.4696 162048.8536 168307.8969 156382.1589 166935.2582 174052.1423 151732.2009 0.975074903 1.037776753 1.063677917 0.955093703 1.067992507 1.1092431 1.030645822 1.100196644 1.147100888 1 17.21116776 -5.975600828 24.56515915 1.08164653 1.013713126 0.325467337 0.047604481 225.5153332 227047.9805 0.014453719 0.016388222 1.06E-06 5.975600828 -0.067933404 VTVAGLAGKDPVQCSR ddPTM_HeLa_A485_30min_R1 2 VTVAGLAGKDPVQCSR 16 1 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 151.04 1.03E-08 64518000 64981 68673 66173 67023 99181 78144 100964 104390 76351 100068 FALSE FALSE TRUE 79435.79927 76703.70997 90653.14639 70684.29678 89306.19139 82235.49901 79392.2166 78788.18882 91673.94537 75122.88922 1.057411397 1.02104313 1.206731362 0.940915579 1.18880134 1.094679662 1.056831246 1.048790717 1.22031975 1 16.19696493 VTVHST(ph)PVRR ddPTM_HeLa_A485_30min_R1 4 VTVHSTPVRR 10 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 VTVHS(0.021)T(0.979)PVRR;VTVHS(0.038)T(0.962)PVRR;VTVHS(0.235)T(0.765)PVRR;VTVHS(0.049)T(0.951)PVRR ;;; 188.91 6.58E-10 1038531000 690152 852213 796939 662415 1198270 852717 960939 1081720 730491 856260 TRUE FALSE FALSE 843673.9314 951871.8971 1091759.899 698601.0541 1078966.031 897363.9436 755626.5325 816426.4739 877093.8432 642810.1403 1.312477633 1.480797886 1.698417357 1.086792212 1.678514329 1.396001537 1.175504998 1.2700896 1.364467964 1 19.29403316 -8.4276873 0.322588519 0.937733744 1.483208857 0.331739114 0.178844151 3.277091995 0.745453076 0.563808557 0.209509032 3.74E-09 8.4276873 0.545475113 VTVHST(ph)PVRR ddPTM_HeLa_A486_30min_R1 5 VTVHSTPVRR 10 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 VTVHS(0.026)T(0.974)PVRR;VTVHS(0.033)T(0.967)PVRR;VTVHS(0.017)T(0.983)PVRR;VTVHS(0.021)T(0.979)PVRR;VTVHS(0.028)T(0.972)PVRR ;;;; 184.31 1.03E-09 2100060000 664672 757530 681940 227012 904440 713300 757230 786070 584634 710800 TRUE FALSE FALSE 618081.9252 697500.5639 946005.431 528495.4086 790996.7016 625300.2983 567763.0448 607099.0208 635310.5458 532811.0535 1.160039607 1.309095522 1.775498884 0.991900234 1.48457262 1.173587324 1.065599223 1.139426476 1.192374936 1 19.02326449 -6.454431715 6.576097544 1.111889812 1.346145191 0.260003548 0.196716722 0.353933903 28.00325344 0.068948761 0.060233705 3.51E-07 6.454431715 0.23425538 VTVLFAGQHIAK ddPTM_HeLa_A485_30min_R1 4 VTVLFAGQHIAK 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 190.46 3.81E-10 822740000 1587680 1661830 1514620 1873540 2346150 1820080 2245080 2262880 1574190 2485480 FALSE FALSE TRUE 1940853.939 1856166.563 2074940.967 1975886.746 2112559.068 1915376.574 1765400.317 1707905.132 1890115.494 1865895.578 1.040172859 0.994785874 1.112034881 1.058948191 1.132195763 1.026518631 0.946141005 0.915327284 1.012980317 1 20.83143682 -6.590149772 4.742430006 0.96254318 1.066859907 0.533575978 0.043392126 0.159950343 7.015171497 0.017366179 0.013376327 2.57E-07 6.590149772 0.104316727 VTVLFAGQHIAK ddPTM_HeLa_A486_30min_R1 4 VTVLFAGQHIAK 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 194.39 2.77E-14 830510000 1604290 1669310 1211210 614487 2176040 1603350 1950830 1873960 1485160 1852210 FALSE FALSE TRUE 1491837.556 1537027.796 1680222.949 1430556.79 1903100.772 1405544.979 1462711.7 1447300.216 1613894.865 1388404.56 1.074497735 1.107046059 1.210182534 1.030360193 1.370710546 1.012345406 1.053519804 1.042419665 1.162409654 1 20.40499658 VTVLFAGQHISK ddPTM_HeLa_A485_30min_R1 2 VTVLFAGQHISK 12 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 172.33 5.80E-07 86743000 87001 164180 143220 42534 215560 126859 142893 176524 137152 116498 FALSE FALSE TRUE 106354.0723 183379.4228 196203.0379 44857.52472 194098.0895 133501.1411 112362.7432 133231.2122 164677.1484 87457.19259 1.216070047 2.09679064 2.243417975 0.512908354 2.219349647 1.52647412 1.284774184 1.523387709 1.882945742 1 16.41628942 -11.10878743 1.937978308 0.000113702 1.615454711 0.11612202 0.506273002 3948659.787 957360.1484 17379926.58 0.124098722 7.78E-12 11.10878743 1.615341009 VTVLFAGQHISK ddPTM_HeLa_A486_30min_R1 2 VTVLFAGQHISK 12 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 155.66 1.02E-05 71670000 137008 143135 125481 15946 176897 106586 121616 121740 134832 61169 FALSE FALSE TRUE 127404.4467 131792.4613 174070.6037 37123.09387 154708.9288 93436.50301 91186.39048 94022.45957 146519.3463 45851.88426 2.778608748 2.874308514 3.796367511 0.809630716 3.374101878 2.037789821 1.988716319 2.050569155 3.195492371 1 15.4846934 -9.870513673 0.152420485 1.17E-20 3.185123535 0.230451311 0.823422258 40.64942446 1.379707764 26.60579338 5.483492676 1.35E-10 9.870513673 3.185123535 VTVPTSGNTIES(ph)PLHENISNSTSFKDEK ddPTM_HeLa_A486_30min_R1 1 VTVPTSGNTIESPLHENISNSTSFKDEK 28 1 A0A2R8YFF1;Q8N302 A0A2R8YFF1 AGGF1 Angiogenic factor with G patch and FHA domains 1 1 0 VTVPTSGNTIES(1)PLHENISNSTSFKDEK 270.46 1.01E-64 288860000 91549 100570 50594 32479 84871 105860 129010 132360 83224 150290 TRUE FALSE FALSE 85131.88786 92600.46693 70185.35175 75612.7534 74225.68779 92800.06951 96730.33347 102224.5174 90437.92333 112656.4058 0.755677294 0.821972495 0.623003648 0.671180239 0.658867885 0.823744277 0.858631454 0.907400841 0.802776573 1 16.78156982 -6.477284811 3.254986137 0.88303581 0.706412942 0.616055405 0.069344314 0.187203812 3.990113812 0.027916331 0.022961459 3.33E-07 6.477284811 -0.176622868 VTYS(ph)PR ddPTM_HeLa_A485_30min_R1 6 VTYSPR 6 0 Q96K76-2;Q96K76-4;Q96K76;Q96K76-3 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 VT(0.038)Y(0.001)S(0.961)PR;VTYS(1)PR;VTYS(1)PR;VTYS(1)PR;VTYS(1)PR;VTYS(1)PR ;;;;; 130.22 0.0053933 11781960000 3765920 5028620 5035120 3996340 6024690 4752820 5509860 5863430 4579210 5090580 TRUE FALSE FALSE 4603635.912 5616673.366 6897820.417 4214649.935 5424850.71 5001670.306 4332633.4 4425414.599 5498215.444 3821592.091 1.204638225 1.469720795 1.804959884 1.102851857 1.41952636 1.308792301 1.133724714 1.158002867 1.438723787 1 21.86574237 -6.000254316 1.096574263 1.200930583 1.454412089 0.201538959 0.200406477 0.818930229 2.092690482 0.096325619 0.112202164 9.99E-07 6.000254316 0.253481506 VTYS(ph)PR ddPTM_HeLa_A486_30min_R1 7 VTYSPR 6 0 Q96K76-2;Q96K76-4;Q96K76;Q96K76-3 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 VT(0.143)YS(0.856)PR;VT(0.001)YS(0.999)PR;VT(0.009)YS(0.991)PR;VT(0.014)YS(0.986)PR;VTYS(1)PR;VTYS(1)PR;VT(0.001)YS(0.999)PR ;;;;;; 125.58 0.0055949 11863000000 5396950 6247840 5526560 1986740 7033630 5537890 6109670 6405290 5175860 6038830 TRUE FALSE FALSE 5018651.675 5752738.404 7666592.038 4625231.124 6151406.539 4854681.437 4580965.945 4946945.293 5624507.712 4526667.662 1.108685693 1.270855038 1.693650299 1.021773956 1.358926035 1.072462526 1.0119952 1.092844817 1.242527204 1 22.11001796 -6.269773627 24.55604504 1.085270564 1.297108465 0.255689334 0.176255422 718.0096347 2115537.656 0.061858556 0.055457161 5.37E-07 6.269773627 0.211837901 VTYS(ph)PRK ddPTM_HeLa_A485_30min_R1 1 VTYSPRK 7 1 Q96K76-2;Q96K76-4;Q96K76;Q96K76-3 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 VTYS(1)PRK 90.15 0.003983 147590000 114060 125530 118900 134300 223230 176700 271230 316700 163200 236580 TRUE FALSE FALSE 139432.2535 140209.6415 162886.0578 141636.4689 201004.4374 185951.7388 213279.4948 239028.8284 195952.743 177604.9599 0.785069592 0.789446655 0.917125614 0.797480369 1.131750135 1.046996316 1.200864519 1.345845457 1.103306704 1 17.43831235 -5.861623607 1.498804352 1.177379687 0.810251337 0.681945426 0.102015816 0.212404408 0.990446921 0.038670135 0.04852543 1.38E-06 5.861623607 -0.36712835 VTYS(ph)PRK ddPTM_HeLa_A486_30min_R1 1 VTYSPRK 7 1 Q96K76-2;Q96K76-4;Q96K76;Q96K76-3 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 VT(0.008)YS(0.992)PRK 54.722 0.027638 227110000 184800 209990 163670 118730 353050 270130 337240 368160 177990 275680 TRUE FALSE FALSE 171846.4743 193349.6276 227047.4072 276409.4403 308767.1769 236804.1071 252858.985 284338.0049 193418.3165 206647.9336 0.831590577 0.935647525 1.098716078 1.337586277 1.494170164 1.145930196 1.223622132 1.375953777 0.935979921 1 17.65681541 -4.82950197 2.560413359 1.239873446 0.858011036 0.400129144 0.160034098 0.25575718 3.324497578 0.043469626 0.126667018 1.48E-05 4.82950197 -0.38186241 VTYTPMAPGSYLISIK ddPTM_HeLa_A485_30min_R1 2 VTYTPMAPGSYLISIK 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 240.6 1.93E-32 47461000 58228 44719 49662 70197 73353 49046 65864 47096 58257 97963 FALSE FALSE TRUE 71180.61772 49948.49805 68034.04041 74031.68436 66049.71776 51613.97272 51791.61834 35545.63216 69948.64554 73542.62698 0.967882446 0.679177507 0.925096685 1.006649985 0.898114746 0.701823892 0.704239439 0.483333729 0.951130636 1 16.16629309 -6.256109795 23.77403066 0.731822263 0.891204918 0.119704758 0.157728171 383.8958539 1712470.725 0.051795407 0.050277489 5.54E-07 6.256109795 0.159382656 VTYTPMAPGSYLISIK ddPTM_HeLa_A486_30min_R1 2 VTYTPMAPGSYLISIK 16 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 181.98 7.00E-13 66522000 45189 55592 40525 17427.7 58928 56261 59318 59526 48915 59645 FALSE FALSE TRUE 42021.48446 51186.68746 56217.3653 40572.56635 51536.70076 49320.08984 44476.009 45973.22924 53154.99158 44709.50378 0.939878122 1.144872636 1.257391842 0.907470737 1.152701247 1.103123177 0.994777514 1.028265254 1.188896926 1 15.44829391 -9.967351261 7.123326114 0.999999996 1.080609846 0.048228181 0.106160919 5.83E-09 8.37E-10 0.100014415 0.024257057 1.08E-10 9.967351261 0.08060985 VVAPVESHVPESNQAQGES(ph)PAANEGTTVQHPEAPQEEK ddPTM_HeLa_A485_30min_R1 1 VVAPVESHVPESNQAQGESPAANEGTTVQHPEAPQEEK 38 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 VVAPVESHVPESNQAQGES(1)PAANEGTTVQHPEAPQEEK 157.09 1.45E-10 167480000 34833 46832 35343 44153 53974 45458 55534 52031 33514 62976 TRUE FALSE FALSE 42581.48068 52308.59502 48417.84644 46564.96659 48600.15905 47838.11059 43668.70723 39270.31567 40239.95239 47277.24219 0.90067607 1.1064223 1.024125863 0.98493407 1.027982107 1.011863391 0.923672896 0.830638884 0.851148471 1 15.52885826 -6.869056164 3.575649191 0.879958001 1.014578196 0.406886362 0.06356741 0.198015334 4.872022517 0.027306822 0.017805778 1.35E-07 6.869056164 0.134620195 VVDLMAHMASK ddPTM_HeLa_A485_30min_R1 5 VVDLMAHMASK 11 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;; ;;;; 165.66 3.01E-06 1153284000 2602149 2623083 2180466 2649319 2591459 3045664 3319015 3164840 2248909 3495419 FALSE FALSE TRUE 3180988.068 2929829.739 2987111.11 2794044.589 2333444.243 3205130.258 2609880.331 2388658.028 2700244.408 2624075.372 1.212231974 1.116518897 1.138348061 1.064772993 0.889244367 1.221432239 0.99459046 0.910285601 1.029027 1 21.32337773 -1.000000012 0.31629925 0.983645262 3.182664525 0.372191398 0.086414411 60.96076472 0.871065985 0.083564891 77.23680297 0.099999997 1.000000012 2.199019263 VVDLMAHMASK ddPTM_HeLa_A486_30min_R1 4 VVDLMAHMASK 11 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 146.16 3.69E-06 872784000 2139590 2721750 1977560 781391 3579280 2664210 2766660 2620480 2672410 2949550 FALSE FALSE TRUE 1989615.79 2506068.618 2743324.193 1819117.737 3130333.327 2335526.858 2074412.405 2023853.909 2904056.651 2210963.482 0.899886319 1.133473546 1.240782227 0.822771499 1.415823171 1.056338957 0.938239108 0.91537193 1.313480152 1 21.07624377 -9.305941099 11.41976604 1.000006516 1.080332387 0.01723018 0.185028812 0 0 0.17270457 0.041887011 4.94E-10 9.305941099 0.080325871 VVDLMAHMASKE ddPTM_HeLa_A485_30min_R1 5 VVDLMAHMASKE 12 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;; ;;;; 203.39 9.51E-17 1637064000 3257925 4178202 3948438 3517036 6387164 6342389 7879034 10631213 4318400 5828080 FALSE FALSE TRUE 3982639.177 4666806.378 5409129.524 3709162.771 5751235.525 6674466.681 6195614.02 8023891.343 5185063.269 4375246.914 0.910266153 1.066638402 1.236302689 0.847760788 1.314493933 1.525506289 1.416060429 1.833928805 1.185090435 1 22.06093301 -5.943354934 5.971662291 1.443459345 1.036370402 0.37326026 0.227205113 0.188795445 13.96972893 0.068079142 0.077077786 1.14E-06 5.943354934 -0.407088943 VVDLMAHMASKE ddPTM_HeLa_A486_30min_R1 4 VVDLMAHMASKE 12 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 179.93 3.38E-10 1509346000 2551500 3077370 2818780 1178487 5345180 3561550 4462460 4879310 3089960 3860630 FALSE FALSE TRUE 2372653.026 2833507.994 3910287.106 2743577.293 4674737.683 3122162.172 3345905.309 3768397.628 3357800.221 2893903.12 0.819879909 0.979130218 1.351215623 0.948054299 1.615374631 1.078875845 1.156191196 1.302185136 1.160301531 1 21.46458519 -4.571210251 5.008432381 1.211463421 0.852695988 0.320917745 0.181685962 0.181646088 9.91490829 0.04376051 0.129008916 2.68E-05 4.571210251 -0.358767433 VVDNS(ph)PPPALPPK ddPTM_HeLa_A485_30min_R1 1 VVDNSPPPALPPK 13 0 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 VVDNS(1)PPPALPPK 69.716 0.011184 88408000 225950 235220 188210 441810 316390 279680 347770 384510 268220 576480 TRUE FALSE FALSE 276211.798 262726.9329 257836.7111 465944.9616 284889.1007 294323.6123 273466.0985 290208.3196 322049.2937 432774.1453 0.638235442 0.607076314 0.595776605 1.076646945 0.658285861 0.680085942 0.631891025 0.670576842 0.744150955 1 18.72325479 -8.159573787 4.630131331 0.999993939 0.697823828 0.324366497 0.131412636 2.049029525 58.30892687 0.131022343 0.034215816 6.93E-09 8.159573787 -0.302170111 VVDNS(ph)PPPALPPK ddPTM_HeLa_A486_30min_R1 2 VVDNSPPPALPPK 13 0 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 VVDNS(1)PPPALPPK;VVDNS(1)PPPALPPK ; 127.71 2.60E-05 609530000 642290 699320 456660 264570 755560 696850 784090 770650 557860 836320 TRUE FALSE FALSE 597268.7878 643903.3363 633490.9818 615932.3306 660790.6195 610879.7321 587902.3887 595189.8182 606215.754 626900.0285 0.952733707 1.027122838 1.010513564 0.982504869 1.054060599 0.974445213 0.937792889 0.949417437 0.967005466 1 19.25787587 -6.510159999 24.63500483 0.958878774 1.006472693 0.317327303 0.029087507 528.3525508 1023372.56 0.010116155 0.008482826 3.09E-07 6.510159999 0.047593918 VVDSDRPER ddPTM_HeLa_A486_30min_R1 1 VVDSDRPER 9 1 P55290;P55290-4 P55290 CDH13 Cadherin-13 0 0 64.654 0.028607 406360000 264030 352640 303210 105350 378490 322610 350370 352010 271800 296080 FALSE FALSE TRUE 245522.8605 324695.5221 420621.0322 245260.1241 331016.2549 282809.6583 262703.7202 271865.0073 295359.8428 221939.6408 1.10625961 1.462990212 1.895204618 1.105075791 1.491469724 1.274263837 1.183671917 1.224950199 1.330811574 1 17.75980785 -6.361927007 1.182437679 1.190438411 1.443467708 0.180578378 0.222331139 0.854515187 2.452811815 0.120527265 0.099164695 4.35E-07 6.361927007 0.253029298 VVDVEEQQLEES(ph)GPHDLTETSYLPR ddPTM_HeLa_A485_30min_R1 3 VVDVEEQQLEESGPHDLTETSYLPR 25 0 P38398;P38398-4;P38398-8;P38398-7;P38398-5;H0Y8B8;B7ZA85;E7EUM2;P38398-3;P38398-6;A0A2R8Y7V5;K7EPC7 P38398 BRCA1 Breast cancer type 1 susceptibility protein 1 0 VVDVEEQQLEES(0.999)GPHDLT(0.001)ETSYLPR;VVDVEEQQLEES(1)GPHDLTETSYLPR;VVDVEEQQLEES(1)GPHDLTETSYLPR ;; 169.65 3.74E-14 684050000 80173 87354 97596 83852 115955 102210 95701 112919 92836 119807 TRUE FALSE FALSE 98007.20726 97569.29042 133700.8217 88432.62244 104410.1131 107561.5576 75253.69954 85225.4382 111467.3337 89941.31978 1.089679443 1.084810526 1.486533909 0.983225759 1.160869257 1.195908152 0.836697746 0.947567129 1.239333978 1 16.45669643 -6.720866894 24.99999311 1.00152982 1.169023777 0.208104986 0.153670133 237.4685553 146323.1893 0.058826864 0.045566606 1.90E-07 6.720866894 0.167493957 VVDYSQFQES(ph)DDADEDYGR ddPTM_HeLa_A485_30min_R1 22 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGR;VVDY(0.016)S(0.018)QFQES(0.966)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.009)QFQES(0.991)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.003)QFQES(0.997)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR ;;;;;;;;;;;;;;;;;;;;; 338.14 3.48E-102 35552726300 1488658.8 1665369.3 1836324.4 1866596.5 1939070.9 1318986.7 1642909.8 1484803 1707336.7 2329379.2 TRUE FALSE FALSE 1819805.814 1860119.753 2515657.211 1968563.94 1746010.193 1388046.804 1291888.7 1120652.736 2049983.515 1748707.834 1.040657438 1.063710996 1.438580626 1.125724893 0.998457351 0.793755696 0.738767606 0.64084618 1.172284743 1 20.73785784 -5.929664858 2.753041681 0.840449645 1.181482317 0.398527397 0.170498677 0.254368509 3.913877169 0.058300031 0.066261863 1.18E-06 5.929664858 0.341032672 VVDYSQFQES(ph)DDADEDYGR ddPTM_HeLa_A486_30min_R1 17 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYS(0.011)QFQES(0.989)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR ;;;;;;;;;;;;;;;; 340.8 2.13E-102 51481210000 2727723.2 3463054 2832149.1 914132.7 3294273 3216768 3205733 3222961 3039529 3058707.9 TRUE FALSE FALSE 2536523.89 3188628.989 3928833.079 2128147.123 2881074.562 2819915.87 2403624.697 2489163.137 3302997.821 2292787.533 1.106305688 1.390721531 1.713561777 0.928192034 1.256581572 1.229907189 1.048341664 1.085649281 1.440603533 1 21.12867124 -5.274380973 24.99225172 1.149512745 1.402248882 0.278425844 0.193117311 1010.053026 1950569.112 0.054017266 0.080677855 5.32E-06 5.274380973 0.252736137 VVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_HeLa_A485_30min_R1 7 VVDYSQFQESDDADEDYGRDSGPPTK 26 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK ;;;;;; 303.19 8.55E-91 33595120000 1611862 1944910 1760390 1974010 2800050 2267180 3085280 3343210 2018890 2752040 TRUE FALSE FALSE 1970415.141 2172350.306 2411631.517 2081845.168 2521267.19 2385886.039 2426084.724 2523282.506 2424062.705 2066007.076 0.953731071 1.05147283 1.167291025 1.00766604 1.220357481 1.154829559 1.174286745 1.221332945 1.173308036 1 20.97841376 -2.974356251 0.644176299 1.161249738 1.03E-14 0.373053416 0.074431333 14.15094701 1.238863699 0.030555274 17.56919039 0.001060825 2.974356251 -1.161249738 VVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_HeLa_A486_30min_R1 10 VVDYSQFQESDDADEDYGRDSGPPTK 26 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDY(0.017)S(0.241)QFQES(0.742)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYSQFQES(1)DDADEDYGRDSGPPTK;VVDYS(0.001)QFQES(0.999)DDADEDYGRDSGPPTK ;;;;;;;;; 320.68 1.46E-106 53123888000 5110018 5148088 3990631 2270707 6806214 5342530 6853344 7132583 4360280 6552910 TRUE FALSE FALSE 4751832.126 4740134.758 5535910.196 5286320.651 5952515.175 4683422.967 5138564.844 5508649.554 4738232.581 4912018.684 0.967388854 0.965007477 1.127013261 1.076201251 1.211826656 0.953461961 1.046120786 1.121463477 0.964620228 1 22.22788462 -4.738815705 24.52262524 1.06825703 0.966197997 0.206811516 0.074852482 277.4585489 300741.4239 0.01872146 0.049446424 1.82E-05 4.738815705 -0.102059033 VVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_HeLa_A485_30min_R1 6 VVDYSQFQESDDADEDYGRDSGPPTKK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDY(0.016)S(0.295)QFQES(0.683)DDADEDY(0.006)GRDSGPPTKK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK ;;;;; 214.5 8.03E-30 85302400000 860403 1169327 732795 915756 1524450 1651750 2388420 3164360 1016898 1456203 TRUE FALSE FALSE 1051796.679 1306069.621 1003886.365 965781.4315 1372670.405 1738233.076 1878114.555 2388295.748 1220980.101 1093198.392 0.962127906 1.194723328 0.918302087 0.883445712 1.255646199 1.590043572 1.717999743 2.184686482 1.116887941 1 20.06012381 -6.087236537 3.011880548 1.609482652 1.001262439 0.364956105 0.319590793 0.249463408 4.385309944 0.108448437 0.111690295 8.18E-07 6.087236537 -0.608220214 VVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_HeLa_A486_30min_R1 5 VVDYSQFQESDDADEDYGRDSGPPTKK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDY(0.003)S(0.039)QFQES(0.948)DDADEDY(0.004)GRDS(0.003)GPPT(0.003)KK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK;VVDYSQFQES(1)DDADEDYGRDSGPPTKK ;;;; 203.38 1.63E-28 22151800000 499947 428059 254535 251243 619550 458125 699210 759330 318522 711170 TRUE FALSE FALSE 464903.297 394138.0459 353097.7687 584906.4011 541840.2619 401606.1954 524260.2625 586447.1351 346131.7434 533088.4031 0.872094186 0.739348378 0.662362502 1.097203386 1.016417275 0.753357591 0.983439631 1.10009359 0.649295204 1 19.02401527 -5.249988666 24.94719745 0.943863675 0.756076361 0.260744519 0.142649168 994.7839458 2167290.992 0.038345788 0.065670261 5.62E-06 5.249988666 -0.187787314 VVEAVNS(ph)DS(ph)DSEFGIPK ddPTM_HeLa_A485_30min_R1 1 VVEAVNSDSDSEFGIPK 17 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 VVEAVNS(0.995)DS(0.995)DS(0.009)EFGIPK 68.44 0.017837 47485000 29246 23524 25987 35548 39193 30951 43406 45383 28078 59411 TRUE FALSE FALSE 35751.6718 26274.92717 35600.67271 37489.89723 35290.80731 32571.5465 34131.95351 34252.74809 33712.99705 44600.93108 0.801590257 0.589111629 0.798204698 0.840563108 0.791257188 0.730288488 0.765274461 0.767982804 0.755881015 1 15.44478621 -14 0.371468659 4.206366327 0.752859333 0.557923938 0.064010284 424.4324003 3.275085374 1092.69001 0.046627522 1.00E-14 14 -3.453506994 VVEAVNS(ph)DS(ph)DSEFGIPK ddPTM_HeLa_A486_30min_R1 2 VVEAVNSDSDSEFGIPK 17 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 2 0 VVEAVNS(0.993)DS(0.96)DS(0.048)EFGIPK;VVEAVNS(1)DS(0.999)DS(0.001)EFGIPK ; 142.26 3.82E-08 0 64611 75148 55028 25792 72037 71437 86575 86163 66385 96018 TRUE FALSE FALSE 60082.10255 69192.9988 76336.3153 60045.07946 63001.44774 62623.82926 64913.0193 66545.56583 72139.30525 71974.46783 0.834769667 0.961354782 1.060602705 0.834255275 0.875330512 0.87008395 0.901889535 0.924571835 1.002290221 1 16.1351976 -7.715297376 4.011398683 1.00354519 0.908647913 0.263229093 0.06288799 0.31813712 10.16306057 0.055350928 0.017196982 1.93E-08 7.715297376 -0.094897277 VVELRPPS(ph)R ddPTM_HeLa_A485_30min_R1 7 VVELRPPSR 9 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R ;;;;;; 111.63 0.00041894 3141170000 774577 1075119 1042877 710867 1177142 943237 1048927 1117703 996596 969855 TRUE FALSE FALSE 946878.9814 1200844.815 1428680.6 749699.8642 1059941.609 992623.4308 824815.1775 843584.5868 1196603.676 728087.9974 1.300500743 1.649312747 1.962236165 1.029683042 1.45578778 1.363328931 1.132850947 1.158629987 1.643487711 1 19.4737533 -5.269495449 24.99948976 1.269245959 1.638546177 0.351756707 0.237401682 669.0435338 2076166.297 0.065713889 0.099438309 5.38E-06 5.269495449 0.369300218 VVELRPPS(ph)R ddPTM_HeLa_A486_30min_R1 7 VVELRPPSR 9 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R;VVELRPPS(1)R ;;;;;; 119.39 0.00023866 2794000000 1342280 1492840 1258910 433971 1584610 1270230 1385710 1407790 1229380 1450020 TRUE FALSE FALSE 1248193.104 1374541.922 1746393.667 1010306.42 1385853.438 1113521.937 1038990.701 1087266.949 1335943.648 1086925.554 1.148370373 1.264614597 1.60672795 0.929508388 1.275021489 1.02446937 0.955898679 1.000314092 1.229103174 1 20.0518217 -5.281660152 24.98675858 1.06244372 1.332375395 0.423529969 0.149969486 774.3255114 956830.3364 0.042296664 0.062823029 5.23E-06 5.281660152 0.269931675 VVES(ph)PDFSKDEDYLGK ddPTM_HeLa_A486_30min_R1 1 VVESPDFSKDEDYLGK 16 1 Q9Y6Y8 Q9Y6Y8 SEC23IP SEC23-interacting protein 1 0 VVES(0.884)PDFS(0.116)KDEDYLGK 125.23 1.12E-05 370900000 627590 603740 241730 341540 513340 733220 947850 834840 460730 1032000 TRUE FALSE FALSE 583599.1819 555897.4436 335334.3298 795122.3805 448952.1105 642762.7712 710687.9047 644765.1564 500666.4474 773580.4828 0.754413012 0.718603243 0.433483441 1.027847003 0.580356046 0.830893211 0.918699373 0.833481675 0.647206669 1 19.56119187 -5.813658967 0.978162129 0.835918675 0.673096749 0.135154162 0.165368367 1.199151982 2.475077336 0.07791834 0.114963294 1.54E-06 5.813658967 -0.162821926 VVETDPSPYCIVAPDTVIHCEGEPIK(ac)REDEEESLNEVGYDDIGGCRK ddPTM_HeLa_A486_30min_R1 1 VVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRK 47 3 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 1 VVETDPSPYCIVAPDTVIHCEGEPIK(1)REDEEESLNEVGYDDIGGCRK 44.875 0.0010157 5016000 780.07 2371.6 2186 1481.9 5096.6 2991.1 3552.7 4154.8 1925.3 1836.2 FALSE TRUE FALSE 725.3911213 2183.665779 3032.477743 3449.938091 4457.336904 2622.088493 2663.776883 3208.842739 2092.186554 1376.403568 0.52701921 1.586501103 2.203189394 2.50648732 3.238393889 1.90502884 1.935316752 2.331324048 1.520038601 1 10.42668782 -4.360462548 2.329062997 2.171880784 0.315103898 0.401639266 0.566850921 0.430283668 3.263077357 0.149518941 1.482573378 4.36E-05 4.360462548 -1.856776886 VVEVGSK ddPTM_HeLa_A485_30min_R1 2 VVEVGSK 7 0 P14618;P14618-2;P14618-3;H3BTN5;B4DNK4;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 101.28 0.03017 112270000 428420 524180 441450 425490 825830 489180 736010 677450 482960 835770 FALSE FALSE TRUE 523720.551 585478.2912 604760.7253 448733.4413 743607.4655 514792.7084 578755.4509 511304.3253 579885.642 627427.9202 0.834710306 0.933140322 0.96387283 0.715195207 1.185167956 0.820481033 0.922425401 0.814921219 0.924226709 1 19.2590902 -4.252085092 22.25545607 0.914386113 0.834710113 0.042221606 0.11916506 1037.720133 2468654.295 0.02792966 0.309267096 5.60E-05 4.252085092 -0.079676001 VVEVLAGHGHLYSR ddPTM_HeLa_A486_30min_R1 2 VVEVLAGHGHLYSR 14 0 P49327 P49327 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ; ; 108.71 0.00060484 24356000 11310.7 13964.1 11379.4 2649.02 16605.3 11853.6 12101.4 11538.3 12865.6 11174.4 FALSE FALSE TRUE 10517.87834 12857.53386 15785.80843 6167.052434 14522.50844 10391.22335 9073.501724 8911.280969 13980.80057 8376.257507 1.25567753 1.534997444 1.884589677 0.736253921 1.733770532 1.240556817 1.083240542 1.063873808 1.669098706 1 13.03209008 -5.240234267 24.8954098 1.237575948 1.556079047 0.195027236 0.315086145 1357.125296 1593301.732 0.082903955 0.143420955 5.75E-06 5.240234267 0.318503099 VVFPPGS(ph)PIPLRR ddPTM_HeLa_A485_30min_R1 3 VVFPPGSPIPLRR 13 1 A0A1B0GTU4;A0A1B0GV30 A0A1B0GTU4 1 0 VVFPPGS(1)PIPLRR;VVFPPGS(1)PIPLRR;VVFPPGS(1)PIPLRR ;; 160.78 5.66E-12 559180000 108064 140744 130833 124054 186152 136445 156085 157911 132909 145690 TRUE FALSE FALSE 132102.464 157202.7865 179233.5711 130830.7559 167618.0533 143589.0492 122736.1647 119183.0797 159582.6172 109372.1642 1.207825272 1.437319885 1.638749424 1.196197925 1.53254765 1.312848203 1.122188315 1.089702124 1.459078901 1 16.73888609 -6.564798755 5.1775991 1.177649186 1.407973787 0.306006386 0.166251763 0.244040428 15.5156119 0.062518318 0.048681953 2.72E-07 6.564798755 0.2303246 VVFPPGS(ph)PIPLRR ddPTM_HeLa_A486_30min_R1 2 VVFPPGSPIPLRR 13 1 A0A1B0GTU4;A0A1B0GV30 A0A1B0GTU4 1 0 VVFPPGS(1)PIPLRR;VVFPPGS(1)PIPLRR ; 162.46 5.12E-12 464250000 120154 149203 140459 85285 176494 138385 162659 157287 111546 145226 TRUE FALSE FALSE 111731.8251 137379.6109 194848.4864 198547.7901 154356.4768 121312.4657 121959.9978 121476.1837 121214.8971 108860.4643 1.026376525 1.261978917 1.789892112 1.823874179 1.41792962 1.114384974 1.12033325 1.115888899 1.113488702 1 16.73212057 -6.220510522 4.322917236 1.099541074 1.496393684 0.416283471 0.219501796 0.239569524 10.17597391 0.084118146 0.081751388 6.02E-07 6.220510522 0.39685261 VVFRDPYR ddPTM_HeLa_A485_30min_R1 1 VVFRDPYR 8 1 P62917;E9PKZ0;E9PKU4;G3V1A1 P62917 RPL8 60S ribosomal protein L8 0 0 93.429 0.0043264 1609500000 655740 1137800 1021000 331000 1165500 717470 604260 767070 628890 453390 FALSE FALSE TRUE 801607.1007 1270855.812 1398710.387 349081.6919 1049458.728 755035.6198 475154.9146 578944.8798 755102.4545 340368.217 2.355117372 3.733767575 4.109403632 1.025600142 3.083304125 2.21829061 1.396002596 1.700936958 2.21848697 1 18.3767368 -5.799245493 0.723977102 1.596287648 3.370513912 0.366681204 0.813413333 0.84740666 0.965812688 0.502066248 0.855069214 1.59E-06 5.799245493 1.774226263 VVFVFGPDK ddPTM_HeLa_A485_30min_R1 1 VVFVFGPDK 9 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 116.73 0.005803 9599300 11462 10129 9503.7 16587 13113 12691 16686 16711 11423 21403 FALSE FALSE TRUE 14011.68236 11313.49844 13019.51411 17493.10581 11807.42368 13355.48114 13120.89979 12612.60105 13715.49132 16067.62599 0.872044343 0.704117612 0.81029482 1.088717513 0.734858011 0.831204382 0.816604755 0.784969793 0.853610317 1 13.97186916 -11.09634793 1.411938087 1.230877602 0.831175543 0.2060144 0.098338755 90113.50039 17434.41633 66753.7043 0.027842579 8.01E-12 11.09634793 -0.39970206 VVFVFGPDK ddPTM_HeLa_A486_30min_R1 1 VVFVFGPDK 9 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 114.89 0.0068322 12493000 29298 37630 25297 16640 36965 39075 43367 42768 31486 45235 FALSE FALSE TRUE 27244.3615 34648.06175 35092.67588 38738.76094 32328.50502 34254.32379 32516.11791 33030.66002 34215.23183 33907.86157 0.803482149 1.021829751 1.034942171 1.142471366 0.953422113 1.010217755 0.958955133 0.974129847 1.009064867 1 15.04933218 -4.259814896 24.78260759 1.012163672 0.803482071 0.604855849 0.050479724 92.54936807 1411761.994 0.013286221 0.082503359 5.50E-05 4.259814896 -0.208681601 VVGFHVLGPNAGEVTQGFAAALK ddPTM_HeLa_A485_30min_R1 2 VVGFHVLGPNAGEVTQGFAAALK 23 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 296.04 3.73E-78 224860000 121364 132639 110773 125234 180892 162592 212133 229910 131617 184020 FALSE FALSE TRUE 148361.0031 148149.9772 151752.5423 132075.2163 162881.7573 171105.0657 166809.0516 173524.212 158031.3246 138147.2006 1.073934198 1.072406654 1.098484382 0.956046997 1.179044936 1.238570633 1.207473266 1.256082 1.143934324 1 17.0758468 -5.87911096 9.129004149 1.189871974 1.055454435 0.36243208 0.075897994 0.255864374 19.30660526 0.022371969 0.025393849 1.32E-06 5.87911096 -0.134417539 VVGFHVLGPNAGEVTQGFAAALK ddPTM_HeLa_A486_30min_R1 2 VVGFHVLGPNAGEVTQGFAAALK 23 0 Q16881;A0A087WSW9;Q16881-6;Q16881-3;Q16881-4;Q16881-2;Q16881-5;A0A087WSY9;E9PIR7;F8W809;A0A182DWI3;Q16881-7;E2QRB9 Q16881 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ; ; 266.18 2.51E-54 234110000 60960 77904 56699 29982.2 91800 79687 90059 90070 67029 90266 FALSE FALSE TRUE 56687.0188 71730.60332 78654.37125 69800.07682 80285.588 69856.02814 67525.28565 69563.02721 72839.12769 67662.80607 0.837786992 1.06011866 1.162446192 1.031587084 1.186554219 1.032413998 0.997967563 1.028083688 1.076501729 1 16.04607539 -4.263407322 6.390216081 1.068021084 0.833044233 0.555452772 0.06063974 0.088001656 21.01250341 0.015332293 0.090400017 5.45E-05 4.263407322 -0.234976852 VVGS(ph)SPGHPAVQVESHSGGQK ddPTM_HeLa_A485_30min_R1 2 VVGSSPGHPAVQVESHSGGQK 21 0 Q6AI39 Q6AI39 GLTSCR1L GLTSCR1-like protein 1 0 VVGS(0.5)S(0.5)PGHPAVQVESHSGGQK;VVGS(0.5)S(0.5)PGHPAVQVESHSGGQK ; 155.39 4.19E-10 601720000 269300 312950 279220 338710 376160 336140 472170 449340 330450 478170 TRUE FALSE FALSE 329204.8559 349546.7802 382515.0973 357212.8696 338708.1896 353739.7706 371287.0222 339138.6605 396768.2839 358971.0191 0.917079203 0.973746519 1.065587685 0.995102252 0.943553021 0.985427101 1.034309185 0.944752201 1.10529336 1 18.45350785 -7.755384742 24.99985867 1.052646681 0.985879912 0.255589724 0.04763523 189.358889 781895.9296 0.033933853 0.012066164 1.76E-08 7.755384742 -0.06676677 VVHLSLRPIFLQPGRPLTR ddPTM_HeLa_A485_30min_R1 2 VVHLSLRPIFLQPGRPLTR 19 2 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 0 ; ; 234.48 3.53E-37 73312000 58727 82342 89839 42555 78247 58375 85196 76475 62980 95698 FALSE FALSE TRUE 71790.61854 91971.18062 123074.1846 44879.6719 70456.45394 61431.42474 66993.17861 57719.38634 75619.50831 71842.24979 0.999281325 1.280182356 1.713117072 0.624697473 0.980710573 0.855087708 0.932503907 0.803418413 1.052577119 1 16.13254491 -5.271541472 24.99947836 0.888279432 1.325792478 0.510428277 0.196586724 534.9327055 1323787.975 0.054502739 0.081904869 5.35E-06 5.271541472 0.437513046 VVHLSLRPIFLQPGRPLTR ddPTM_HeLa_A486_30min_R1 2 VVHLSLRPIFLQPGRPLTR 19 2 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 0 ; ; 222.7 1.91E-29 59801000 45544 80107 58592 25480.3 77868 58168 63644 60117 56590 68386 FALSE FALSE TRUE 42351.60079 73759.02958 81280.39155 59319.4261 68101.06935 50991.82357 47719.59804 46429.67144 61495.26676 51261.70048 0.826184079 1.43887208 1.585596864 1.157188028 1.328498054 0.994735311 0.930901581 0.905738027 1.199633765 1 15.64559372 -6.266429919 23.4767475 0.995604067 1.288370802 0.296669209 0.199333935 217.9141802 1025118.126 0.069633216 0.063423899 5.41E-07 6.266429919 0.292766734 VVIGMDVAASEFFR ddPTM_HeLa_A485_30min_R1 1 VVIGMDVAASEFFR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 165.66 4.98E-07 10782000 6955.1 6637.8 8512.9 8793.1 11476 8076.8 8777 8918.7 7218.1 9744.5 FALSE FALSE TRUE 8502.238 7414.032969 11662.17596 9273.444788 10333.40915 8499.688759 6901.722249 6731.374841 8666.706462 7315.375484 1.162242187 1.013486319 1.594200597 1.267664908 1.412560321 1.16189371 0.943454272 0.920168056 1.18472476 1 12.8367162 -6.546975222 4.962669999 1.008187946 1.290805578 0.4119871 0.156333788 0.194071877 12.65086688 0.062083838 0.048986664 2.84E-07 6.546975222 0.282617633 VVIGMDVAASEFFR ddPTM_HeLa_A486_30min_R1 1 VVIGMDVAASEFFR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 111.52 0.00070445 17234000 69209 52990 49697 10401 62867 44351 58882 61180 60363 53247 FALSE FALSE TRUE 64357.8065 48790.87941 68941.00933 24214.05364 54981.63465 38879.42455 44149.10081 47250.64955 65595.31344 39913.60462 1.61242782 1.222412255 1.727255907 0.60666166 1.377516142 0.974089535 1.106116604 1.18382316 1.64343246 1 15.28459295 -5.219388685 24.9999788 1.138185292 1.490869928 0.289977144 0.280522703 685.9909184 407834.3568 0.073228319 0.126834035 6.03E-06 5.219388685 0.352684635 VVIIGAGKPAAVVLQTK ddPTM_HeLa_A485_30min_R1 2 VVIIGAGKPAAVVLQTK 17 1 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 202.03 1.20E-18 121271000 95747 107699 96190 97998 156175 118599 149889 170132 97120 164649 FALSE FALSE TRUE 117045.5898 120293.4612 131774.6838 103351.3826 140625.6686 124808.6603 117863.9907 128406.8602 116611.0932 123605.0344 0.946932221 0.973208427 1.066094795 0.836142177 1.137701788 1.009737676 0.953553318 1.038848141 0.943417019 1 16.91537798 -4.527654069 24.67516108 0.999059033 0.953501237 0.043832491 0.075607907 320.9211795 1658283.715 0.018344256 0.048947784 2.97E-05 4.527654069 -0.045557796 VVIIGAGKPAAVVLQTK ddPTM_HeLa_A486_30min_R1 2 VVIIGAGKPAAVVLQTK 17 1 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 210.9 1.11E-19 98688000 142545 159698 97377 51565 163287 160800 202183 181120 139508 205366 FALSE FALSE TRUE 132553.3316 147042.9489 135083.9822 120045.926 142806.0219 140962.1309 151594.6749 139882.9298 151600.6658 153941.0169 0.861065714 0.955190188 0.877504807 0.779817675 0.927667134 0.915689228 0.984758175 0.908678744 0.984797092 1 17.23201816 -6.313945675 2.171053647 0.960451016 0.875908718 0.429275815 0.048469886 0.353615058 3.273112101 0.019975644 0.017751528 4.85E-07 6.313945675 -0.084542297 VVILGYR ddPTM_HeLa_A485_30min_R1 2 VVILGYR 7 0 C9JQQ1;F8W1T5;Q8TAI7-2;Q8TAI7 C9JQQ1 RHEBL1 GTPase RhebL1 0 0 ; ; 117.54 0.012631 75744000 57462 72810 80018 53274 88992 75377 85733 96583 69316 86460 FALSE FALSE TRUE 70244.22366 81324.49614 109619.988 56184.22372 80131.64401 79323.62317 67415.44418 72895.86781 83227.0854 64907.11318 1.082226897 1.252936576 1.688874804 0.865609653 1.234558742 1.222109863 1.038644932 1.123079802 1.282249068 1 15.98608897 -5.27943349 24.99863583 1.121547923 1.332505228 0.251771551 0.18216266 1214.612202 1687418.4 0.051128461 0.075999841 5.25E-06 5.27943349 0.210957305 VVISLQLTAEKR ddPTM_HeLa_A486_30min_R1 1 VVISLQLTAEKR 12 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 150.21 2.84E-06 0 15903 13868 10867 9670.1 16640 14162 17900 15813 10304 19593 FALSE FALSE TRUE 14788.28182 12769.04917 15074.99343 22512.4815 14552.85604 12414.83643 13421.23067 12212.7251 11197.15902 14686.78527 1.00691074 0.86942438 1.02643248 1.532839289 0.99088097 0.845306594 0.913830387 0.831545152 0.762396863 1 13.84223102 -6.000716909 25 0.868933308 1.10789983 0.305828448 0.169345843 36.04032365 1256874.556 0.056818968 0.063681422 9.98E-07 6.000716909 0.238966521 VVK(ac)QASEGPLK ddPTM_HeLa_A486_30min_R1 1 VVKQASEGPLK 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 VVK(1)QASEGPLK 118.28 0.0010649 0 14055 15972 11609 6720.6 18731 19541 19873 19981 13991 20106 FALSE TRUE FALSE 13069.81708 14706.32055 16104.3157 15645.89644 16381.58332 17130.2301 14900.5652 15431.76248 15203.75115 15071.32673 0.867197514 0.975781417 1.068540016 1.038123366 1.086937044 1.136610625 0.988669775 1.02391533 1.008786513 1 13.8795188 -4.399009746 2.533025526 1.047407286 0.853458345 0.618777526 0.042592427 0.254107292 2.501105872 0.011802516 0.091816094 3.99E-05 4.399009746 -0.193948941 VVKPESNDKETEAAYES(ph)DIPEELCGHHLPQQSLK ddPTM_HeLa_A485_30min_R1 1 VVKPESNDKETEAAYESDIPEELCGHHLPQQSLK 34 2 Q8IYB7;Q8IYB7-4;Q8IYB7-5;Q8IYB7-3;Q8IYB7-2 Q8IYB7;Q8IYB7-2 DIS3L2 DIS3-like exonuclease 2 1 0 VVKPESNDKET(0.001)EAAYES(0.999)DIPEELCGHHLPQQSLK 205.28 1.46E-29 757800000 1551700 989350 612600 2322700 1526700 1492300 2532400 2390700 1131000 3012000 TRUE FALSE FALSE 1896870.312 1105045.876 839226.2324 2449583.22 1374696.387 1570434.52 1991332.052 1804377.077 1357981.326 2261163.832 0.838891143 0.488706683 0.371147911 1.083328499 0.607959657 0.694524872 0.88066686 0.797985998 0.600567419 1 21.1086341 -13.99999991 0.094005749 1.900416734 0.491079045 0.166138809 0.195086658 359.9229228 2.327599391 65.03786091 4.061181032 1.00E-14 13.99999991 -1.409337689 VVKPESNDKETEAAYES(ph)DIPEELCGHHLPQQSLK ddPTM_HeLa_A486_30min_R1 1 VVKPESNDKETEAAYESDIPEELCGHHLPQQSLK 34 2 Q8IYB7;Q8IYB7-4;Q8IYB7-5;Q8IYB7-3;Q8IYB7-2 Q8IYB7;Q8IYB7-2 DIS3L2 DIS3-like exonuclease 2 1 0 VVKPES(0.001)NDKET(0.013)EAAY(0.01)ES(0.976)DIPEELCGHHLPQQSLK 117.39 2.13E-05 1173100000 349290 322140 130380 156690 316340 431010 576950 510520 249140 512720 TRUE FALSE FALSE 324806.5747 296612.4532 180866.6277 364782.2387 276661.6874 377836.3684 432591.0076 394285.7406 270735.6558 384331.5748 0.845120714 0.771761866 0.470600491 0.949134192 0.71985157 0.983099993 1.125567182 1.025899943 0.70443251 1 18.55199198 -6.265213633 24.09622053 0.979279143 0.747827942 0.338347218 0.150916858 230.6250242 1472388.006 0.052832383 0.048404848 5.43E-07 6.265213633 -0.231451201 VVKPKS(ph)PEPEATLTFPFLDK ddPTM_HeLa_A485_30min_R1 2 VVKPKSPEPEATLTFPFLDK 20 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VVKPKS(0.999)PEPEAT(0.001)LTFPFLDK;VVKPKS(1)PEPEATLTFPFLDK ; 135.01 1.90E-07 637410000 325610 213846 147242 618100 390460 380670 746980 636220 278360 905420 TRUE FALSE FALSE 398040.8212 238853.4295 201712.9431 651865.2379 351584.4314 400601.2926 587381.6207 480186.0474 334224.2987 679715.457 0.58559919 0.351402086 0.296760859 0.95902665 0.517252371 0.589366166 0.864158104 0.706451564 0.491712076 1 19.37457141 -8.720272384 0.079935805 1.586614857 7.55E-15 0.327220153 0.18875587 51.04303961 1.535835804 18.2616147 11.50406651 1.90E-09 8.720272384 -1.586614857 VVKPKS(ph)PEPEATLTFPFLDK ddPTM_HeLa_A486_30min_R1 2 VVKPKSPEPEATLTFPFLDK 20 2 Q9UPQ0-10;Q9UPQ0-8;Q9UPQ0-2;Q9UPQ0;E7EPK0;Q9UPQ0-9;Q9UPQ0-6;E9PDJ9;G5EA03;H0Y8P3;Q9UPQ0-3;Q9UPQ0-4;Q9UPQ0-5 Q9UPQ0-10 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VVKPKS(1)PEPEATLTFPFLDK;VVKPKS(1)PEPEATLTFPFLDK ; 215.28 1.48E-28 4599690000 2053850 1582480 521804 1700990 1605590 2588250 3930190 3512550 1230530 4823950 TRUE FALSE FALSE 1909885.721 1457078.522 723860.4832 3959990.683 1404201.931 2268938.03 2946814.893 2712819.043 1337193.331 3616001.521 0.528176139 0.402952961 0.200182572 1.095129706 0.388330017 0.627471536 0.814937404 0.75022619 0.369798885 1 21.78596385 -14 0.061705361 2.395175209 3.25E-12 0.219859246 0.245597656 598.2779381 2.68475129 126.9982322 20.10029168 1.00E-14 14 -2.395175209 VVKPTSITVHDS(ph)ES(ph)DDEEDSLELQEVWIPK ddPTM_HeLa_A485_30min_R1 1 VVKPTSITVHDSESDDEEDSLELQEVWIPK 30 1 Q6PIJ6;Q6PIJ6-2;Q6PIJ6-3 Q6PIJ6 FBXO38 F-box only protein 38 2 0 VVKPT(0.28)S(0.28)IT(0.294)VHDS(0.53)ES(0.53)DDEEDS(0.085)LELQEVWIPK 107.23 0.00042099 67508000 102740 98163 76426 148070 143430 128440 184460 201230 108690 204900 TRUE FALSE FALSE 125594.1586 109642.3089 104699.1578 156158.6892 129149.6056 135164.9198 145048.6141 151878.027 130503.086 153822.2009 0.816489153 0.712785985 0.680650499 1.015189539 0.839603158 0.878708788 0.942962805 0.987360902 0.84840215 1 17.23090421 -5.254553489 24.99905422 0.924388237 0.734256283 0.64389906 0.065892646 341.4112254 1239482.038 0.017724001 0.029876066 5.56E-06 5.254553489 -0.190131954 VVLASAS(ph)PR ddPTM_HeLa_A485_30min_R1 1 VVLASASPR 9 0 O95671;O95671-2 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 VVLASAS(1)PR 141.27 0.00012446 90269000 65694 91230 104640 76489 114400 100610 106330 116720 81512 98998 TRUE FALSE FALSE 80307.40366 101898.5549 143350.6904 80667.40039 103009.9343 105877.784 83611.72686 88094.23699 97870.71073 74319.62052 1.080567999 1.371085511 1.928840452 1.085411898 1.386039563 1.424627619 1.12502898 1.185342933 1.316889269 1 16.18145551 -7.674468329 0.450911115 1.011562524 1.414454982 0.173898186 0.231858659 1.741727394 0.956290912 0.280587935 0.172528297 2.12E-08 7.674468329 0.402892458 VVLASAS(ph)PR ddPTM_HeLa_A486_30min_R1 3 VVLASASPR 9 0 O95671;O95671-2 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 VVLASAS(1)PR;VVLASAS(1)PR;VVLASAS(1)PR ;; 175.49 3.37E-09 455041000 607590 689440 658120 193839 812600 620670 727200 717250 588270 721620 TRUE FALSE FALSE 565001.0786 634806.2635 912961.6891 451266.9881 710676.1308 544098.0459 545246.8685 553947.8325 639261.7173 540921.655 1.044515547 1.173564152 1.687789129 0.834255726 1.313824514 1.005872183 1.007996007 1.024081449 1.181800934 1 19.04506013 -5.295567025 24.99904345 1.060636153 1.289117716 0.258005152 0.193116126 888.0845131 650534.1297 0.053578274 0.079474248 5.06E-06 5.295567025 0.228481562 VVLAYEPVWAIGTGK ddPTM_HeLa_A485_30min_R1 2 VVLAYEPVWAIGTGK 15 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 251.03 3.66E-40 118728000 204820 231750 221090 211624 289220 276470 338370 378060 228740 327330 FALSE FALSE TRUE 250381.5024 258851.1465 302880.3913 223184.4833 260424.2413 290945.5417 266074.4853 285340.1922 274646.0199 245732.6551 1.018918313 1.053385218 1.23256061 0.908241044 1.05978687 1.183992179 1.08278033 1.161181415 1.117661874 1 17.90673006 -6.047662111 24.50365109 1.118032711 1.055830552 0.085108642 0.087046953 763.6539816 392601.5533 0.028322703 0.028323691 8.96E-07 6.047662111 -0.06220216 VVLAYEPVWAIGTGK ddPTM_HeLa_A486_30min_R1 2 VVLAYEPVWAIGTGK 15 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 285.83 2.39E-65 119159000 252910 291480 218252 107421 321310 305110 326170 320790 275640 352230 FALSE FALSE TRUE 235182.315 268382.0632 302765.0194 250081.5168 281008.3037 267468.6303 244558.8161 247753.1198 299532.6971 264029.3154 0.890743192 1.016485851 1.14670986 0.947173296 1.064307209 1.013026262 0.926256298 0.938354589 1.134467575 1 18.0103386 -4.262570871 8.295842355 1.018687092 0.889898942 0.224688224 0.072367215 0.135418665 136.7354466 0.018002901 0.100671248 5.46E-05 4.262570871 -0.12878815 VVLDDK(ac)DYFLFR ddPTM_HeLa_A485_30min_R1 1 VVLDDKDYFLFR 12 1 P61604;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 1 VVLDDK(1)DYFLFR 175.33 2.31E-08 23070000 18160 21647 28406 17012 24259 24086 31864 29736 18871 40197 FALSE TRUE FALSE 22199.62935 24178.42835 38914.56147 17941.32248 21843.68878 25347.10572 25055.9961 22443.19938 22658.2366 30176.62767 0.735656402 0.801230297 1.289559652 0.594543654 0.723861162 0.839958195 0.830311338 0.743727882 0.750853835 1 14.88114397 VVLDDKDYFLFR ddPTM_HeLa_A485_30min_R1 4 VVLDDKDYFLFR 12 1 P61604;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 ;;; ;;; 196.15 5.04E-14 1053379000 432809 437530 331198 479551 472820 494567.7 637820 672822 377901 699327.5 FALSE FALSE TRUE 529085.8689 488695.3275 453721.9225 505747.6568 425744.3806 520462.5 501544.5465 507811.3496 453742.2644 524998.0244 1.0077864 0.930851746 0.864235485 0.963332495 0.810944729 0.991360873 0.955326541 0.967263353 0.864274232 1 19.00195247 VVLDDKDYFLFR ddPTM_HeLa_A486_30min_R1 3 VVLDDKDYFLFR 12 1 P61604;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 ;; ;; 147.18 2.17E-07 1002380000 656206 698331 483168.9 279781.9 823282 679355 791027 797707 604438 814814 FALSE FALSE TRUE 610209.3481 642992.7083 670264.8378 651346.4026 720018.2948 595543.0873 593103.678 616086.5299 656831.1725 610779.2709 0.999066892 1.052741537 1.097392904 1.066418645 1.178851885 0.975054518 0.971060588 1.008689324 1.0753986 1 19.22029157 -6.337937972 24.99999184 1.004397394 1.0777823 0.350025055 0.049601717 148.6937062 48592.46416 0.018053536 0.015921723 4.59E-07 6.337937972 0.073384906 VVLGDGVQLPPGDYS(ph)TTPGGTLFS(ph)TTPGGTR ddPTM_HeLa_A486_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.01)S(0.33)T(0.33)T(0.265)PGGT(0.068)LFS(0.388)T(0.312)T(0.252)PGGT(0.045)R 85.489 0.00037125 66797000 70931 70282 65203 25446 84551 68416 74163 76200 60456 73299 TRUE FALSE FALSE 65959.10319 64712.59836 90451.3478 59239.57397 73945.82517 59975.52952 55606.63298 58850.92343 65696.37476 54944.4533 1.200468823 1.177782187 1.646232556 1.078172052 1.345828755 1.09156659 1.012051802 1.071098535 1.195687113 1 15.74568623 -6.302927992 7.693264841 1.074004594 1.291477783 0.345762687 0.148300233 0.335854404 55.70817752 0.051688217 0.045845458 4.98E-07 6.302927992 0.21747319 VVLGDGVQLPPGDYS(ph)TTPGGTLFSTT(ph)PGGTR ddPTM_HeLa_A486_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.012)S(0.328)T(0.328)T(0.328)PGGT(0.013)LFS(0.143)T(0.119)T(0.61)PGGT(0.119)R 74.404 0.0023115 59271000 43822 48835 43791 15502 62199 44314 53857 56281 47524 53582 TRUE FALSE FALSE 40750.3041 44965.13675 60748.04796 36089.43943 54397.42144 38846.98923 40381.40896 43467.04491 51643.41858 40164.71844 1.014579603 1.119518286 1.512472895 0.89853585 1.354358341 0.967191872 1.005395046 1.082219585 1.285790629 1 15.29364114 -6.289122673 24.9733033 1.069337901 1.179384632 0.089531068 0.178194362 2010.871217 1814014.905 0.061687446 0.05441374 5.14E-07 6.289122673 0.110046731 VVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTRIIYDRK ddPTM_HeLa_A486_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.21)S(0.238)T(0.259)T(0.283)PGGT(0.118)LFS(0.313)T(0.292)T(0.23)PGGT(0.053)RIIY(0.004)DRK 73.149 0.0045453 105400000 47781 32279 32182 18247 81850 38779 50082 70891 22860 37408 TRUE FALSE FALSE 44431.79864 29721.09448 44643.73226 42479.93815 71583.60978 33994.84126 37550.95389 54750.66684 24841.52321 28040.79331 1.584541427 1.059923453 1.592099473 1.514933535 2.552838252 1.212335217 1.339154476 1.9525363 0.885906576 1 14.77523955 -7.779359881 24.87223577 0.942952436 1.58987903 0.307642476 0.394616921 335.0010952 464941.069 0.382955054 0.099735592 1.66E-08 7.779359881 0.646926595 VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_A485_30min_R1 7 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.002)S(0.043)T(0.034)T(0.668)PGGT(0.252)LFS(0.009)T(0.036)T(0.919)PGGT(0.036)R;VVLGDGVQLPPGDY(0.004)S(0.129)T(0.103)T(0.591)PGGT(0.166)LFS(0.143)T(0.117)T(0.638)PGGT(0.111)R;VVLGDGVQLPPGDYS(0.002)T(0.004)T(0.98)PGGT(0.015)LFS(0.001)T(0.005)T(0.909)PGGT(0.085)R;VVLGDGVQLPPGDY(0.005)S(0.042)T(0.234)T(0.494)PGGT(0.284)LFS(0.209)T(0.186)T(0.515)PGGT(0.031)R;VVLGDGVQLPPGDY(0.001)S(0.014)T(0.07)T(0.755)PGGT(0.151)LFS(0.025)T(0.014)T(0.965)PGGT(0.006)R;VVLGDGVQLPPGDYS(0.001)T(0.008)T(0.989)PGGT(0.002)LFS(0.002)T(0.01)T(0.891)PGGT(0.096)R;VVLGDGVQLPPGDY(0.003)S(0.2)T(0.2)T(0.591)PGGT(0.007)LFS(0.055)T(0.183)T(0.707)PGGT(0.054)R ;;;;;; 162.46 1.82E-14 2712460000 1186762 1549910 1587891 1283595 1761766 1373691 1650620 1614328 1450478 1724673 TRUE FALSE FALSE 1450753.113 1731158.492 2175317.959 1353714.545 1586358.391 1445615.337 1297951.553 1218411.527 1741575.63 1294743.761 1.120494383 1.337066487 1.680114648 1.045546297 1.225229608 1.116526204 1.002477549 0.941044524 1.345112201 1 20.30423518 -5.315026818 24.99982117 1.096378534 1.375010708 0.372131179 0.168226833 330.8100792 154330.127 0.047562097 0.070546057 4.84E-06 5.315026818 0.278632174 VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_A486_30min_R1 5 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDYS(0.005)T(0.026)T(0.92)PGGT(0.049)LFS(0.005)T(0.023)T(0.814)PGGT(0.158)R;VVLGDGVQLPPGDYST(0.007)T(0.986)PGGT(0.007)LFS(0.007)T(0.03)T(0.951)PGGT(0.012)R;VVLGDGVQLPPGDYS(0.002)T(0.025)T(0.966)PGGT(0.008)LFS(0.025)T(0.018)T(0.853)PGGT(0.103)R;VVLGDGVQLPPGDYS(0.037)T(0.037)T(0.876)PGGT(0.05)LFS(0.029)T(0.14)T(0.691)PGGT(0.14)R;VVLGDGVQLPPGDYS(0.037)T(0.195)T(0.731)PGGT(0.037)LFS(0.033)T(0.023)T(0.921)PGGT(0.023)R ;;;; 166.28 1.38E-14 2532816000 1561150 1897772 1683979 602640 2106963 1733999 1875767 1918906 1621663 1851400 TRUE FALSE FALSE 1451721.447 1747385.635 2336060.767 1402976.376 1842688.054 1520075.833 1406430.257 1482012.993 1762230.055 1387797.389 1.04606152 1.259107164 1.683286613 1.010937466 1.327778873 1.095315386 1.013426216 1.067888587 1.269803552 1 20.40436553 -6.274559434 22.25029049 1.088788431 1.274158094 0.185638633 0.184013517 316.7095173 537103.5142 0.065078833 0.057858978 5.31E-07 6.274559434 0.185369663 VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTRIIYDRK ddPTM_HeLa_A485_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.057)S(0.148)T(0.154)T(0.589)PGGT(0.079)LFS(0.194)T(0.184)T(0.573)PGGT(0.018)RIIY(0.004)DRK 106.44 0.00010743 258110000 40563 112910 75650 42641 165020 177060 229490 474460 93614 70997 TRUE FALSE FALSE 49586.09941 126113.8423 103636.0831 44970.36986 148590.0294 186330.5878 180457.5867 358097.9411 112401.4711 53298.7545 0.930342554 2.366168656 1.944437239 0.843741477 2.787870575 3.495965141 3.385774929 6.71869248 2.108894892 1 15.7018142 -6.029279062 3.192141567 3.696380393 1.613238701 0.241118104 1.446180347 0.312412405 6.489658666 0.478457239 0.508984535 9.35E-07 6.029279062 -2.083141693 VVLIGGKPDR ddPTM_HeLa_A485_30min_R1 4 VVLIGGKPDR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 129.7 0.00031855 1055737000 1022480 1187340 1096210 1152690 1451210 1315720 1491200 1523280 1178580 1518400 FALSE FALSE TRUE 1249927.148 1326189.085 1501743.696 1215658.536 1306722.437 1384609.065 1172592.938 1149693.192 1415110.195 1139890.824 1.096532336 1.163435179 1.317445201 1.066469271 1.146357536 1.214685683 1.028688812 1.008599392 1.241443624 1 20.12046422 -6.763000373 24.99914289 1.070399571 1.168567401 0.222491545 0.0895519 67.03119403 1073459.633 0.035881214 0.025638708 1.73E-07 6.763000373 0.09816783 VVLIGGKPDR ddPTM_HeLa_A486_30min_R1 3 VVLIGGKPDR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;; ;; 115.78 0.0011832 492005000 690100 762530 553054 284107 968860 733690 814110 843580 632270 808390 FALSE FALSE TRUE 641727.5537 702104.3457 767211.3201 661415.454 847336.5445 643174.7874 610411.0672 651515.2492 687075.6727 605963.8823 1.059019477 1.158657085 1.266100741 1.091509698 1.398328464 1.061407794 1.007339026 1.075171752 1.133855817 1 19.20887228 -6.4650214 24.99969459 1.056643024 1.194842563 0.352776706 0.094267527 309.7991536 133861.6251 0.032511274 0.028672175 3.43E-07 6.4650214 0.138199539 VVLSLHHPPDRT(ph)SDSTPDPQRVPLR ddPTM_HeLa_A485_30min_R1 2 VVLSLHHPPDRTSDSTPDPQRVPLR 25 2 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 VVLSLHHPPDRT(0.5)S(0.5)DS(0.001)TPDPQRVPLR;VVLSLHHPPDRT(0.5)S(0.5)DSTPDPQRVPLR ; 110.17 0.0002318 411220000 59008 166183 188192 33465 214656 105026 132540 144628 136391 72629 TRUE FALSE FALSE 72134.12602 185616.6563 257812.0521 35293.10821 193284.0949 110524.999 104221.7462 109157.7562 163763.4226 54523.92694 1.322981122 3.404315622 4.728420468 0.647295787 3.544940832 2.027091686 1.911486426 2.002015672 3.003514821 1 15.73460185 -6.014607927 1.000080298 2.036223376 2.901843434 0.070617032 1.173473366 1.528047649 3.291987179 0.598014667 0.700083578 9.67E-07 6.014607927 0.865620057 VVLSLHHPPDRT(ph)SDSTPDPQRVPLR ddPTM_HeLa_A486_30min_R1 1 VVLSLHHPPDRTSDSTPDPQRVPLR 25 2 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 VVLSLHHPPDRT(0.497)S(0.497)DS(0.003)T(0.003)PDPQRVPLR 80.117 0.0042702 228940000 53383 67004 83699 5070.5 98941 37201 60276 58288 53566 21095 TRUE FALSE FALSE 49641.12737 61694.35902 116109.4943 11804.38025 86530.89719 32611.51885 45194.30727 45017.09482 58209.14401 15812.67469 3.139325151 3.901576438 7.3428118 0.746513824 5.472249247 2.062365759 2.858106433 2.846899445 3.681170019 1 13.9487938 -6.000229732 0.983783731 2.610608473 4.349083237 0.146511904 1.736687894 1.121811019 2.346112238 0.869911424 1.038432393 9.99E-07 6.000229732 1.738474764 VVLVLAGR ddPTM_HeLa_A486_30min_R1 3 VVLVLAGR 8 0 P61353;K7EQQ9;K7ERY7 P61353 RPL27 60S ribosomal protein L27 0 0 ;; ;; 209.44 2.12E-10 444985000 431082 504035 460872 150641 710620 385363 475285 478369 419342 462779 FALSE FALSE TRUE 400865.3779 464093.4309 639333.981 350699.861 621487.4133 337820.8311 356363.6659 369454.8214 455690.9022 346896.1262 1.155577557 1.337845527 1.843012743 1.010965054 1.791566312 0.973838581 1.027292146 1.065030116 1.313623496 1 18.4041442 -6.296772876 24.99579425 1.076979671 1.422707124 0.327231036 0.252186678 736.950929 521335.1904 0.085413102 0.07533004 5.05E-07 6.296772876 0.345727453 VVNANQNAS(ph)PNVPGKR ddPTM_HeLa_A485_30min_R1 1 VVNANQNASPNVPGKR 16 1 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 0 VVNANQNAS(1)PNVPGKR 117.27 5.98E-05 151640000 75725 88077 64997 69011 120370 94827 109880 130520 67491 128900 TRUE FALSE FALSE 92569.765 98376.83898 89042.09505 72780.89618 108385.5402 99791.99509 86403.24036 98509.76535 81035.82464 96767.60223 0.956619394 1.016629912 0.920164322 0.752120488 1.120060203 1.031254188 0.892894299 1.018003579 0.837427225 1 16.56223649 -3.756327838 16.99454247 0.955100202 22.03693835 0 0.101443456 35165.10965 2410517.264 0.024451423 497603.6446 0.000175256 3.756327838 21.08183815 VVNGAAASQPPS(ph)K ddPTM_HeLa_A485_30min_R1 1 VVNGAAASQPPSK 13 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VVNGAAASQPPS(1)K 156.29 8.61E-07 0 145250 117210 100390 217380 139590 136220 199490 176700 105470 267670 TRUE FALSE FALSE 177560.3614 130916.6899 137528.4386 229254.919 125691.9295 143352.2686 156867.3318 133364.0479 126636.8616 200944.7951 0.883627572 0.651505752 0.684409061 1.140885082 0.625504778 0.7133913 0.780648893 0.663685008 0.630207224 1 17.61643968 VVNGAAASQPPS(ph)K ddPTM_HeLa_A486_30min_R1 2 VVNGAAASQPPSK 13 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VVNGAAAS(0.002)QPPS(0.998)K;VVNGAAAS(0.001)QPPS(0.999)K ; 149.09 6.84E-08 319980000 482870 500780 217210 264230 318540 491210 616300 539010 352000 893730 TRUE FALSE FALSE 449023.3065 461096.369 301319.5291 615140.7934 278585.7429 430609.5045 462095.2214 416289.1895 382511.6434 669934.1908 0.670249873 0.68827114 0.449774819 0.918210776 0.415840461 0.642763887 0.689762111 0.621388183 0.570968983 1 19.35365986 -10.37913529 2.933117555 1.005578676 0.630226529 0.415342962 0.131803424 34349007.38 41531826.25 1626607.544 0.032028665 4.18E-11 10.37913529 -0.375352147 VVNGGPPRMS(ph)PK ddPTM_HeLa_A485_30min_R1 2 VVNGGPPRMSPK 12 1 A0A5F9ZHH4 A0A5F9ZHH4 1 0 VVNGGPPRMS(1)PK;VVNGGPPRMS(1)PK ; 62.68 0.0052635 0 521550 606440 459870 681290 766320 659600 1065000 1223510 492890 994340 TRUE FALSE FALSE 637566.9982 677357.8827 629995.0498 718507.1476 690022.4901 694135.6361 837454.0497 923442.2541 591808.5019 746469.3375 0.854110097 0.907415548 0.843966414 0.962540739 0.924381559 0.929891693 1.121886738 1.237079955 0.792810196 1 19.50972347 -6.639834672 5.942608423 1.056973973 0.902253867 0.261554505 0.10940474 0.261485304 12.59533906 0.041473791 0.031849867 2.29E-07 6.639834672 -0.154720106 VVNGGVPWPS(ph)PCPS(ph)PSSRPPSR ddPTM_HeLa_A485_30min_R1 2 VVNGGVPWPSPCPSPSSRPPSR 22 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 2 0 VVNGGVPWPS(1)PCPS(0.965)PS(0.03)S(0.006)RPPSR;VVNGGVPWPS(0.999)PCPS(0.851)PS(0.124)S(0.022)RPPS(0.005)R ; 117.03 7.37E-05 320570000 186306 191169 209522 166716 272680 199888 223170 248710 177522 209212 TRUE FALSE FALSE 227749.127 213524.5516 287032.9067 175823.2729 245531.0218 210353.8266 175487.9064 187713.4825 213149.0371 157059.2987 1.450083687 1.359515504 1.827544814 1.119470636 1.563301402 1.339327428 1.11733535 1.195175861 1.357124595 1 17.26094983 -6.55193427 4.844857104 1.185900092 1.459317624 0.36216561 0.184664593 0.227185918 13.40076234 0.068810384 0.054084133 2.81E-07 6.55193427 0.273417531 VVNGGVPWPS(ph)PCPS(ph)PSSRPPSR ddPTM_HeLa_A486_30min_R1 2 VVNGGVPWPSPCPSPSSRPPSR 22 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 2 0 VVNGGVPWPS(1)PCPS(0.941)PS(0.027)S(0.032)RPPSR;VVNGGVPWPS(1)PCPS(0.885)PS(0.061)S(0.054)RPPSR ; 119.85 4.00E-05 270580000 216960 269000 217210 82632 274640 231331 251810 242980 188305 229970 TRUE FALSE FALSE 201752.2244 247683.4603 301319.5291 192371.472 240192.0903 202791.7332 188804.4746 187658.7582 204627.429 172384.0151 1.170365038 1.436812225 1.747955162 1.115947275 1.393354773 1.17639523 1.095255117 1.088608814 1.187044105 1 17.39526648 -6.190406117 1.166758215 1.09066471 1.417742037 0.394520585 0.164848026 0.492864722 1.391435724 0.083085879 0.0799113 6.45E-07 6.190406117 0.327077327 VVNGGVPWPSPCPS(ph)PSSRPPSR ddPTM_HeLa_A485_30min_R1 2 VVNGGVPWPSPCPSPSSRPPSR 22 1 Q99700;A0A2R8YDM9;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8Y7P6;H0YH87;Q99700-5;Q99700-2;Q99700-4;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 VVNGGVPWPSPCPS(0.702)PS(0.149)S(0.149)RPPSR;VVNGGVPWPSPCPS(0.971)PS(0.015)S(0.015)RPPSR ; 150.59 5.85E-10 773980000 159831 178743 188934 245220 201782 174811 222290 225720 154365 257830 TRUE FALSE FALSE 195384.8545 199645.439 258828.5488 258615.7477 181691.8756 183963.8337 174795.9256 170361.8161 185344.6396 193557.726 1.009439709 1.031451666 1.337216313 1.336116894 0.938696064 0.950433948 0.903068708 0.880160248 0.957567768 1 17.56240437 -5.817512543 12.45310604 0.931032079 1.179331186 0.557906703 0.1046446 0.71297156 156.9500178 0.035795915 0.040606744 1.52E-06 5.817512543 0.248299107 VVNTDHGS(ph)PEQLQIPVTDSGR ddPTM_HeLa_A485_30min_R1 4 VVNTDHGSPEQLQIPVTDSGR 21 0 Q6IQ49-3;Q6IQ49-2;Q6IQ49 Q6IQ49-3 SDE2 Protein SDE2 homolog 1 0 VVNT(0.002)DHGS(0.998)PEQLQIPVTDSGR;VVNT(0.087)DHGS(0.913)PEQLQIPVTDSGR;VVNT(0.14)DHGS(0.86)PEQLQIPVTDSGR;VVNT(0.002)DHGS(0.998)PEQLQIPVTDSGR ;;; 198.06 1.64E-26 3030910000 530001 663562 696108 559099 808751 635908 783668 832341 642785 770765 TRUE FALSE FALSE 647897.894 741159.8037 953627.3167 589641.1627 728228.9107 669203.1596 616230.9298 628208.0647 771786.0535 578627.4704 1.119715062 1.280892874 1.648085107 1.019034168 1.258545347 1.156535412 1.064987339 1.085686555 1.333822006 1 19.14227529 -5.314581646 24.9999948 1.138399485 1.342700339 0.292155337 0.15534708 419.8665781 197519.0143 0.043473314 0.064481421 4.85E-06 5.314581646 0.204300855 VVNTDHGS(ph)PEQLQIPVTDSGR ddPTM_HeLa_A486_30min_R1 5 VVNTDHGSPEQLQIPVTDSGR 21 0 Q6IQ49-3;Q6IQ49-2;Q6IQ49 Q6IQ49-3 SDE2 Protein SDE2 homolog 1 0 VVNT(0.028)DHGS(0.972)PEQLQIPVTDSGR;VVNT(0.009)DHGS(0.991)PEQLQIPVTDSGR;VVNT(0.092)DHGS(0.908)PEQLQIPVTDSGR;VVNT(0.076)DHGS(0.924)PEQLQIPVTDSGR;VVNT(0.005)DHGS(0.995)PEQLQIPVTDSGR ;;;; 214.3 1.07E-27 4345102000 1321174 1512139 1218540 477834 1686280 1305045 1391244 1537665 1237881 1428695 TRUE FALSE FALSE 1228566.525 1392311.599 1690391.322 1112421.7 1474771.038 1144041.817 1043140.036 1187572.246 1345181.522 1070940.473 1.1471847 1.30008309 1.578417629 1.038733458 1.37708031 1.068259017 0.9740411 1.108905935 1.25607497 1 20.03044686 -6.274231896 24.5179535 1.081549363 1.291207318 0.323075641 0.14967325 750.8407791 1439045.612 0.052622104 0.046718072 5.32E-07 6.274231896 0.209657955 VVPEDGS(ph)PEKR ddPTM_HeLa_A485_30min_R1 4 VVPEDGSPEKR 11 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR ;;; 188.91 2.63E-10 3515000000 4927570 4578170 3349260 7857000 6261470 5403030 8199000 7938900 4353240 10365200 TRUE FALSE FALSE 6023690.947 5113547.157 4588290.648 8286208.015 5638056.061 5685924.296 6447216.67 5991872.327 5226895.338 7781346.397 0.774119367 0.657154546 0.589652537 1.064881011 0.724560478 0.730712142 0.828547701 0.770030278 0.6717212 1 22.89158837 -11.16189899 2.318732586 1.572549807 0.758814014 0.2651594 0.121407697 7388169.24 1757996.358 22221522.58 0.030631225 6.89E-12 11.16189899 -0.813735794 VVPEDGS(ph)PEKR ddPTM_HeLa_A486_30min_R1 5 VVPEDGSPEKR 11 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR ;;;; 150.22 3.80E-07 11196650000 13970960 13713200 7409030 7917440 12869570 15479890 19680630 18698340 10980920 22550450 TRUE FALSE FALSE 12991667.85 12626516.09 10278004.84 18432200.45 11255348.53 13570138.56 14756328.21 14441136.16 11932754.99 16903670.54 0.768570815 0.746968894 0.608033907 1.090425917 0.665852337 0.802792419 0.872965915 0.854319547 0.705926855 1 24.01083322 -14 0.189468919 1.84926914 0.757597144 0.190860963 0.126824182 233.687167 2.283541788 75.38527349 0.341257173 1.00E-14 14 -1.091671996 VVPGQFDDADS(ph)SDSENR ddPTM_HeLa_A485_30min_R1 1 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.5)S(0.5)DSENR 103.04 0.00029018 112270000 76680 88914 84494 78276 99297 83171 86100 83531 78245 104520 TRUE FALSE FALSE 93737.20146 99311.71885 115751.8467 82552.01967 89410.64203 87525.70495 67704.03163 63044.89128 93948.05379 78465.08755 1.194635785 1.265680342 1.475201906 1.052085995 1.139495855 1.115473234 0.862855491 0.803476976 1.197322997 1 16.25976326 -5.894584311 1.190263886 0.964523284 1.29492918 0.464827053 0.135640705 0.399490202 1.196370443 0.060085919 0.076550232 1.27E-06 5.894584311 0.330405896 VVPGQFDDADS(ph)SDSENRDLK ddPTM_HeLa_A485_30min_R1 1 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.5)S(0.5)DS(0.001)ENRDLK 103.67 3.36E-05 1593200000 176140 199650 147390 242400 284570 245280 369950 414730 203190 359860 TRUE FALSE FALSE 215321.7353 222997.3308 201915.6944 255641.6982 256237.2116 258122.4815 290907.1603 313016.8172 243968.3692 270153.5247 0.797034707 0.825446683 0.74741092 0.946283038 0.94848739 0.955465903 1.076821635 1.158662718 0.903073056 1 18.04341998 -5.685886278 1.128822843 1.037723394 0.786417388 0.647199043 0.070861765 0.298372837 0.800530934 0.029608682 0.048014203 2.06E-06 5.685886278 -0.251306006 VVPGQFDDADS(ph)SDSENRDLK ddPTM_HeLa_A486_30min_R1 2 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.5)S(0.5)DSENRDLK;VVPGQFDDADS(0.617)S(0.382)DSENRDLK ; 165.62 1.06E-13 757300000 390280 382310 212606 222417 490540 462210 595820 569100 320740 610780 TRUE FALSE FALSE 362923.3874 352014.3633 294932.737 517798.0163 429011.8991 405187.2296 446739.5341 439528.3534 348542.0014 457836.7125 0.792691756 0.768864431 0.644187609 1.13096657 0.93704128 0.885003798 0.975761711 0.96001116 0.761280151 1 18.80447363 -5.245228383 24.99938487 0.946167174 0.738609583 0.52112155 0.094275935 681.5294807 1051002.298 0.025464292 0.043934123 5.69E-06 5.245228383 -0.207557591 VVPGQFDDADSS(ph)DSENR ddPTM_HeLa_A485_30min_R1 2 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADSS(1)DSENR;VVPGQFDDADS(0.124)S(0.876)DSENR ; 326.98 2.14E-91 2127960000 585860 633120 648130 611270 658340 517940 601080 517850 612560 755860 TRUE FALSE FALSE 716182.5358 707157.8766 887900.2579 644662.1323 592793.358 545058.5375 472654.3476 390846.4755 735495.1733 567438.0126 1.262133519 1.246229299 1.564752869 1.136092609 1.044683904 0.960560494 0.832962081 0.688791492 1.296168316 1 19.11410327 -5.666233799 2.370196749 0.937444075 1.346711061 0.506500053 0.168635555 0.22836792 2.616151067 0.054349692 0.07373809 2.16E-06 5.666233799 0.409266986 VVPGQFDDADSS(ph)DSENR ddPTM_HeLa_A486_30min_R1 5 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.005)S(0.995)DSENR;VVPGQFDDADS(0.024)S(0.976)DSENR;VVPGQFDDADSS(1)DSENR;VVPGQFDDADS(0.223)S(0.777)DSENR;VVPGQFDDADS(0.024)S(0.976)DSENR ;;;; 355.79 1.76E-105 2766530000 1036500 1151240 844120 294589 1032860 978020 1006980 983080 963420 1072270 TRUE FALSE FALSE 963846.7025 1060011.55 1170985.87 685818.0797 903309.0678 857361.8362 755022.9533 759254.1445 1046930.021 803766.6127 1.199162403 1.318805152 1.456872993 0.853255247 1.123844974 1.066680082 0.939355954 0.944620158 1.30252987 1 19.61641713 -5.255912628 24.97969416 1.03189 1.324332679 0.520068724 0.128562463 359.6059011 1625333.036 0.034610767 0.05779031 5.55E-06 5.255912628 0.292442679 VVPGQFDDADSS(ph)DSENRDLK ddPTM_HeLa_A485_30min_R1 4 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.159)S(0.84)DSENRDLK;VVPGQFDDADS(0.163)S(0.837)DSENRDLK;VVPGQFDDADS(0.22)S(0.78)DSENRDLK;VVPGQFDDADS(0.177)S(0.823)DSENRDLK ;;; 243.94 1.24E-46 2552510000 736966 717927 606485 1016310 1121490 922220 1464650 1630630 803880 1389690 TRUE FALSE FALSE 900901.5442 801882.3175 830849.0394 1071828.442 1009830.518 970506.0132 1151715.562 1230715.436 965211.3424 1043265.858 0.863539755 0.76862701 0.796392437 1.027378049 0.967951275 0.930257619 1.103952126 1.179675752 0.925182526 1 19.99267542 -5.262408019 24.71402869 1.024376207 0.805430451 0.61459814 0.07599199 49.39070432 1260177.183 0.022311726 0.035375596 5.47E-06 5.262408019 -0.218945756 VVPGQFDDADSS(ph)DSENRDLK ddPTM_HeLa_A486_30min_R1 4 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.007)S(0.993)DSENRDLK;VVPGQFDDADS(0.017)S(0.983)DSENRDLK;VVPGQFDDADS(0.104)S(0.896)DSENRDLK;VVPGQFDDADS(0.173)S(0.827)DSENRDLK ;;; 273.92 1.19E-72 3230380000 1728383 1590990 1014952 950778 1798550 1781520 2490560 2313910 1240868 2468910 TRUE FALSE FALSE 1607232.277 1464914.158 1407968.596 2213459.234 1572959.088 1561734.176 1867395.546 1787083.205 1348427.437 1850678.866 0.86845552 0.791555026 0.760784932 1.196025563 0.849936268 0.843870973 1.009032728 0.965636577 0.728612328 1 20.81962315 VVPQQITHT(ph)SPR ddPTM_HeLa_A485_30min_R1 1 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 VVPQQITHT(0.525)S(0.475)PR 116.43 0.0003051 233760000 213670 315630 305640 227690 360680 288750 297280 364520 270050 297020 TRUE FALSE FALSE 261200.1543 352540.1829 418708.9547 240128.1282 324769.4328 303868.5035 233763.6994 275120.8985 324246.558 222978.3802 1.171414709 1.581050963 1.877800683 1.076912156 1.456506377 1.362771149 1.048369349 1.233845623 1.45416142 1 17.76654431 -5.281960143 24.9859772 1.249966288 1.547185086 0.293291562 0.219560593 1029.225469 1253177.416 0.062031006 0.092123717 5.22E-06 5.281960143 0.297218798 VVPQQITHTS(ph)PR ddPTM_HeLa_A485_30min_R1 3 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 VVPQQITHT(0.073)S(0.927)PR;VVPQQITHT(0.216)S(0.784)PR;VVPQQITHT(0.086)S(0.914)PR ;; 144.41 1.50E-07 1729820000 1000410 1264610 1316350 1060060 1493070 1200780 1364130 1492060 1158020 1374130 TRUE FALSE FALSE 1222947.753 1412495.139 1803322.643 1117968.394 1344414.708 1263650.984 1072672.482 1126129.946 1390423.992 1031584.68 1.185503989 1.369247883 1.748109174 1.083738849 1.303251914 1.224960983 1.03982979 1.091650513 1.347852502 1 19.97643082 -5.3145155 24.99944981 1.163897735 1.427785208 0.370435303 0.166018857 351.9466175 165770.0232 0.04699014 0.069697689 4.85E-06 5.3145155 0.263887473 VVPQQITHTS(ph)PR ddPTM_HeLa_A486_30min_R1 4 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3-3;Q9H0E3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 VVPQQITHT(0.087)S(0.913)PR;VVPQQITHT(0.116)S(0.884)PR;VVPQQITHT(0.059)S(0.941)PR;VVPQQITHT(0.452)S(0.548)PR ;;; 156.98 2.87E-08 1320280000 1441230 1482110 1266410 750117 1610370 1379180 1610530 1584330 1228880 1890440 TRUE FALSE FALSE 1340207.22 1364662.206 1756797.868 1746310.285 1408382.378 1209030.794 1207558.36 1223612.645 1335400.308 1417061.519 0.945765022 0.963022556 1.239747071 1.232346134 0.993875255 0.853195699 0.852156623 0.863485902 0.942372854 1 20.43447096 -5.99880566 8.816899454 0.894070069 1.098364663 0.458145051 0.098725078 0.100987264 100.2845789 0.034194984 0.037344533 1.00E-06 5.99880566 0.204294594 VVPS(ph)PLQFCAATPK ddPTM_HeLa_A485_30min_R1 2 VVPSPLQFCAATPK 14 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VVPS(1)PLQFCAATPK;VVPS(1)PLQFCAATPK ; 186.77 1.59E-17 985000000 193062 195189 163541 206103 247556 229945 279836 286827 179117 235669 TRUE FALSE FALSE 236007.9758 218014.6556 224041.6214 217361.885 222908.4554 241984.5646 220046.7526 216482.2285 215064.1389 176921.0555 1.333973366 1.232270829 1.266336677 1.228581213 1.259931752 1.367754471 1.243756725 1.223609185 1.215593805 1 17.43274623 -8.454438347 0.966850069 0.999554949 1.274340172 0.787024428 0.042505507 0.715193606 1.054330504 0.042577895 0.013705959 3.51E-09 8.454438347 0.274785222 VVPS(ph)PLQFCAATPK ddPTM_HeLa_A486_30min_R1 2 VVPSPLQFCAATPK 14 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VVPS(1)PLQFCAATPK;VVPS(1)PLQFCAATPK ; 208.38 4.00E-22 837870000 344940 347900 220110 124932 371960 347080 380400 382390 262540 379200 TRUE FALSE FALSE 320761.4873 320331.137 305342.4868 290848.0097 325305.3084 304260.7985 285219.8965 295328.1445 285297.1786 284245.8518 1.128464972 1.126950965 1.074219676 1.023226928 1.144450504 1.070414208 1.003426768 1.038988406 1.003698653 1 18.11677977 -5.554018285 0.272002809 0.985908302 1.175297964 0.567919671 0.035003813 3.522794386 0.390611803 0.055043426 0.218118466 2.79E-06 5.554018285 0.189389663 VVPSFLPVDQGGS(ph)LVGR ddPTM_HeLa_A485_30min_R1 4 VVPSFLPVDQGGSLVGR 17 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR ;;; 235.72 3.27E-42 1922250000 340663 311609 246441 323498 234944 292978 386371 315776 298658 605408 TRUE FALSE FALSE 416442.3091 348048.9619 337609.7812 341169.8766 211552.1504 308317.875 303819.6795 238331.4409 358595.9211 454490.9273 0.916282997 0.765799581 0.742830628 0.750663778 0.465470569 0.678380704 0.668483486 0.524392076 0.789005676 1 18.79389197 -4.280207529 1.11406692 0.667715559 1.023244053 0.159769544 0.139514831 2.442350339 2.57554526 0.041769418 1.016115526 5.25E-05 4.280207529 0.355528494 VVPSFLPVDQGGS(ph)LVGR ddPTM_HeLa_A486_30min_R1 5 VVPSFLPVDQGGSLVGR 17 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR ;;;; 233.79 4.57E-36 1606285000 419144 467379 481657 148673.8 633793 502139 537353 509430 593035 689623 TRUE FALSE FALSE 389764.1701 430342.1859 668167.4896 346120.12 554296.7721 440190.1956 402901.5959 393443.9098 644439.7513 516936.9121 0.753987887 0.832484924 1.292551323 0.669559693 1.072271604 0.851535623 0.77940187 0.761106241 1.246650677 1 18.9796287 -7.761456615 25 1.123325334 0.884550085 0.229381156 0.180412141 0.694344783 990994.2131 0.138659866 0.04457927 1.73E-08 7.761456615 -0.238775249 VVPVK(ac)AK ddPTM_HeLa_A486_30min_R1 1 VVPVKAK 7 1 P19338 P19338 NCL Nucleolin 0 1 VVPVK(1)AK 113.25 0.037927 105440000 413010 420170 300690 128330 477420 432490 479620 479700 375820 464670 FALSE TRUE FALSE 384060.1318 386874.199 417125.2208 298758.7254 417537.5318 379133.781 359614.0031 370482.7818 408396.3802 348313.6075 1.102627413 1.110706532 1.197556489 0.857729124 1.198740224 1.088483978 1.032443164 1.063647167 1.172496197 1 18.41002731 -8.320784871 0.007729115 4.78E-05 2.129371082 0.043333987 0.095970274 14197.18604 53.86519498 7534.9877 7299.290377 4.78E-09 8.320784871 2.129323274 VVQHTK(ac)GCK ddPTM_HeLa_A485_30min_R1 1 VVQHTKGCK 9 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 VVQHTK(1)GCK 130.98 0.00056523 34712000 82986 83230 70954 97215 109090 104800 139200 172250 161430 226360 FALSE TRUE FALSE 101445.9494 92963.0245 97202.83724 102525.6093 98228.61656 110287.1659 109458.7828 130005.4174 193827.5203 169932.6178 0.5969775 0.547058156 0.57200812 0.603330959 0.578044509 0.649005278 0.644130504 0.765040985 1.140613984 1 17.37460327 -7.562485848 2.713697246 1.071750915 0.596993979 0.935849065 0.048572544 0.062190404 0.87363532 0.04040446 0.013272038 2.74E-08 7.562485848 -0.474756936 VVQHTK(ac)GCK ddPTM_HeLa_A486_30min_R1 2 VVQHTKGCK 9 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; VVQHTK(1)GCK;VVQHTK(1)GCK 131.28 0.00054939 89006000 233470 238920 210630 115079 268510 328510 325140 292130 295300 387230 FALSE TRUE FALSE 217104.9586 219987.1091 292191.5769 267909.7278 234830.972 287981.7762 243786.533 225618.3762 320896.8418 290265.0876 0.747954087 0.757883461 1.006637 0.922982953 0.809022449 0.992133703 0.839875491 0.777283889 1.105530274 1 18.14701153 -4.737682599 23.55460734 0.917917676 0.752918255 0.347609477 0.096496998 138.5514343 137367.7114 0.023785816 0.062827995 1.83E-05 4.737682599 -0.164999421 VVQPQEEIATK(ac)K ddPTM_HeLa_A486_30min_R1 1 VVQPQEEIATKK 12 1 E9PIM3;F8WAA7;Q96HW7-2;Q96HW7 E9PIM3 INTS4 Integrator complex subunit 4 0 1 VVQPQEEIATK(1)K 169.89 7.19E-06 31141000 16750 22727 20249 12292 30536 28921 35698 35971 24523 31425 FALSE TRUE FALSE 15575.9115 20926.02975 28089.95509 28616.3972 26705.89014 25353.02107 26765.98283 27781.18854 26648.67338 23555.97546 0.661229739 0.888353352 1.192476836 1.214825396 1.13372041 1.076288312 1.136271468 1.179369056 1.13129144 1 14.52380546 -4.528151938 3.003458169 1.140206952 0.674053532 0.861236251 0.060575105 0.087610861 1.498394208 0.016014243 0.071920492 2.96E-05 4.528151938 -0.46615342 VVQVSAGDSHTAALTDDGR ddPTM_HeLa_A485_30min_R1 1 VVQVSAGDSHTAALTDDGR 19 0 C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2 C9JRH2 RCC1 Regulator of chromosome condensation 0 0 150.69 2.56E-10 9744000 9248.3 10643 21620 8074.2 24504 13284 12807 14883 18268 15689 FALSE FALSE TRUE 11305.55243 11887.60627 29618.13768 8515.273101 22064.29572 13979.5297 10070.67983 11232.92091 21934.22004 11778.02103 0.95988557 1.009304214 2.514695601 0.722979954 1.873344907 1.186916686 0.855040061 0.95371887 1.862300973 1 13.52380953 -6.492811444 24.72048332 1.143489523 1.427393613 0.047718114 0.541031831 1937.725431 1593145.596 0.1875614 0.165170786 3.22E-07 6.492811444 0.283904091 VVSAPVGKET(ph)PSKR ddPTM_HeLa_A485_30min_R1 4 VVSAPVGKETPSKR 14 2 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 1 0 VVSAPVGKET(0.968)PS(0.032)KR;VVSAPVGKET(0.994)PS(0.006)KR;VVSAPVGKET(0.935)PS(0.065)KR;VVSAPVGKET(0.996)PS(0.004)KR ;;; 146.88 7.56E-08 6051620000 4803420 3755130 2473070 6591200 5590350 5559380 8520940 8823910 3854890 8913640 TRUE FALSE FALSE 5871924.207 4194259.788 3387961.506 6951260.566 5033755.125 5850460.54 6700371.559 6659832.237 4628531.064 6691633.591 0.877502351 0.626791609 0.50629812 1.038798743 0.752246078 0.874294813 1.001305805 0.995247595 0.691689257 1 22.67392702 -5.264997738 24.99960841 0.90349338 0.665856787 0.388657325 0.1363728 314.0673508 2206515.377 0.037801339 0.058655962 5.43E-06 5.264997738 -0.237636593 VVSAPVGKET(ph)PSKR ddPTM_HeLa_A486_30min_R1 3 VVSAPVGKETPSKR 14 2 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 1 0 VVSAPVGKET(0.86)PS(0.14)KR;VVSAPVGKET(0.986)PS(0.014)KR;VVSAPVGKET(0.945)PS(0.055)KR ;; 128.59 2.26E-05 6448600000 8244370 7504470 3362270 4481690 7243580 8952800 12438490 10854800 5471660 12478840 TRUE FALSE FALSE 7666482.237 6909788.466 4664230.989 10433600.81 6335022.653 7848294.561 9326248.241 8383398.999 5945947.894 9354057.24 0.81958898 0.738694268 0.498631863 1.115409126 0.677248652 0.839025715 0.997027066 0.896231313 0.635654427 1 23.15716083 -5.250945472 24.99551632 0.87047174 0.69094399 0.244770844 0.155797468 1112.361773 2649537.6 0.041572142 0.071071457 5.61E-06 5.250945472 -0.17952775 VVSETNDTK ddPTM_HeLa_A485_30min_R1 2 VVSETNDTK 9 0 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 189.38 2.12E-08 49947000 38919 39960 24311 54913 34902 45242 51596 72802 45322 80040 FALSE FALSE TRUE 47576.39728 44632.97439 33304.65057 57912.75814 31427.03433 47610.80116 40572.0931 54947.19535 54417.70968 60087.50103 0.791785254 0.742799644 0.554269191 0.963807067 0.523021157 0.792357817 0.675216849 0.914452996 0.905641086 1 15.8747773 -7.317420707 5.801222645 0.936398234 0.719513822 0.413041155 0.11999074 0.218711623 16.20153357 0.062753746 0.02977983 4.81E-08 7.317420707 -0.216884412 VVSISSEHLEPIT(ph)PTK ddPTM_HeLa_A485_30min_R1 2 VVSISSEHLEPITPTK 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 VVSISSEHLEPIT(0.986)PT(0.014)K;VVSISSEHLEPIT(1)PTK ; 163.45 8.56E-12 465660000 804350 805930 780570 710750 1261600 760060 1030260 843160 957850 1378200 TRUE FALSE FALSE 983274.8825 900176.5028 1069335.325 749576.4728 1135990.674 799855.5663 810136.5345 636373.688 1150081.709 1034640.104 0.950354504 0.870038286 1.033533613 0.724480397 1.097957319 0.773076129 0.783012887 0.61506768 1.111576581 1 19.98069759 VVSISSEHLEPIT(ph)PTK ddPTM_HeLa_A486_30min_R1 2 VVSISSEHLEPITPTK 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 VVSISSEHLEPIT(1)PTK;VVSISSEHLEPIT(1)PTK ; 173.21 2.98E-12 582620000 1589770 1720590 1245490 85937 1753670 1661960 1921620 1755310 1626280 1211340 TRUE FALSE FALSE 1478335.333 1584244.182 1727777.083 200065.679 1533708.356 1456924.273 1440810.351 1355664.231 1767247.26 908012.5795 1.628100057 1.744738143 1.902811836 0.220333598 1.689082719 1.604519921 1.586773558 1.493001597 1.946280591 1 19.79235276 VVSQS(ph)QPGS(ph)R ddPTM_HeLa_A485_30min_R1 2 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 2 0 VVS(0.002)QS(0.998)QPGS(1)R;VVS(0.006)QS(0.994)QPGS(1)R ; 185.66 2.27E-09 5172200000 4737600 5122200 5667700 5158900 6940000 4749600 6079600 5705300 4991700 6198200 TRUE FALSE FALSE 5791462.775 5721196.733 7764418.083 5440717.644 6249029.232 4998281.712 4780643.794 4306066.229 5993488.403 4653102.809 1.24464535 1.22954445 1.668653886 1.169266588 1.342981122 1.074182522 1.027409879 0.925418244 1.288062751 1 22.14976163 -6.281006846 5.045910963 1.053872651 1.336213347 0.434273976 0.152774724 0.181806879 13.79806749 0.053381889 0.048803529 5.24E-07 6.281006846 0.282340696 VVSQS(ph)QPGS(ph)R ddPTM_HeLa_A486_30min_R1 3 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 2 0 VVS(0.003)QS(0.997)QPGS(1)R;VVS(0.006)QS(0.994)QPGS(1)R;VVS(0.027)QS(0.973)QPGS(1)R ;; 135.84 9.13E-05 5474340000 2735080 3513250 3268830 1080080 3949790 2911580 3413440 3393740 2860570 2705040 TRUE FALSE FALSE 2543365.016 3234847.275 4534608.518 2514480.824 3454370.508 2552378.862 2559361.208 2621059.487 3108526.511 2027680.377 1.254322449 1.595343779 2.236352716 1.240077506 1.703607012 1.258767847 1.262211361 1.292639371 1.533045615 1 20.95139883 -6.26734462 24.5907973 1.287177689 1.620049134 0.257354757 0.284594304 581.8791335 2423071.383 0.099082392 0.089710692 5.40E-07 6.26734462 0.332871445 VVSQS(ph)QPGSR ddPTM_HeLa_A485_30min_R1 2 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 VVS(0.008)QS(0.992)QPGSR;VVS(0.033)QS(0.966)QPGS(0.001)R ; 135.26 4.77E-05 851580000 348060 488530 546230 435030 606130 492120 520160 548220 503020 561240 TRUE FALSE FALSE 425484.7462 545659.3339 748303.2075 458794.5873 545781.5689 517886.6422 409023.5667 413768.1854 603971.5 421333.1969 1.009853364 1.295077952 1.776036669 1.088911557 1.295368067 1.229161733 0.970784096 0.982045062 1.433477126 1 18.68460206 -6.556889623 6.468294325 1.094552062 1.304511815 0.144165494 0.225318594 0.35957615 44.48862629 0.087812242 0.068484159 2.77E-07 6.556889623 0.209959753 VVSQS(ph)QPGSR ddPTM_HeLa_A486_30min_R1 2 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 VVS(0.001)QS(0.999)QPGSR;VVS(0.039)QS(0.961)QPGS(0.001)R ; 165.78 4.27E-07 1062610000 538700 640650 651060 192632 745000 596440 631440 623080 540820 620400 TRUE FALSE FALSE 500939.9118 589882.5608 903167.868 448457.0311 651555.1532 522857.297 473447.0333 481218.2857 587698.713 465047.8019 1.077179399 1.268434252 1.942096843 0.96432459 1.40104985 1.124308716 1.018061007 1.03477166 1.263738288 1 18.82701949 -6.130442115 1.427859561 1.078490428 1.368664263 0.177486753 0.25259955 0.711759026 2.939137172 0.110826997 0.111459848 7.41E-07 6.130442115 0.290173835 VVSQSQPGS(ph)R ddPTM_HeLa_A485_30min_R1 4 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R ;;; 161.23 5.80E-07 2198690000 988820 1343700 1361480 1099510 1520070 1194140 1295100 1295130 1314690 1632680 TRUE FALSE FALSE 1208779.598 1500834.026 1865148.108 1159573.447 1368726.494 1256663.324 1018391.305 977497.3368 1578536.224 1225682.923 0.986209055 1.224487996 1.521721542 0.94606315 1.1167052 1.025276032 0.830876637 0.797512406 1.287883019 1 20.22515438 -5.320102118 24.99991131 0.990971537 1.242176611 0.282721422 0.177278061 319.8570757 136310.617 0.0507129 0.07521941 4.79E-06 5.320102118 0.251205074 VVSQSQPGS(ph)R ddPTM_HeLa_A486_30min_R1 4 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R ;;; 167.84 3.57E-07 2737650000 1249950 1393420 1275280 429504 1602780 1208520 1322260 1340640 1162110 1309930 TRUE FALSE FALSE 1162334.96 1283000.324 1769102.569 999907.0179 1401744.387 1059425.09 991416.5626 1035405.538 1262842.63 981915.0018 1.183742949 1.306630739 1.801686058 1.018323395 1.42756184 1.078937676 1.009676561 1.05447573 1.286101779 1 19.90523862 -6.271060475 24.07794658 1.084482942 1.352248619 0.297613426 0.200988063 538.5699497 1347831.165 0.070096785 0.062641143 5.36E-07 6.271060475 0.267765677 VVSSIEQK ddPTM_HeLa_A485_30min_R1 1 VVSSIEQK 8 0 E7EX29;P63104;E7ESK7;E9PD24;E7EVZ2;E5RIR4 E7EX29 YWHAZ 14-3-3 protein zeta/delta 0 0 88.948 0.01282 0 49561 67288 44974 57860 73228 75910 88251 93217 55161 80667 FALSE FALSE TRUE 60585.67347 75156.74627 61611.75412 61020.74529 65937.1632 79884.53022 69395.45291 70355.38459 66231.30673 60558.20147 1.000453646 1.241066354 1.017397357 1.007638005 1.08882301 1.319136439 1.145929886 1.161781276 1.093680214 1 15.88603474 -4.186958025 21.11319133 1.123970704 1.000440766 0.115671537 0.098043708 58750.78972 16647329.43 0.025204517 139.7701435 6.50E-05 4.186958025 -0.123529938 VVSSVNVRLS(ph)PGKETR ddPTM_HeLa_A485_30min_R1 1 VVSSVNVRLSPGKETR 16 2 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 VVSSVNVRLS(0.93)PGKET(0.07)R 102.9 0.0001593 693750000 144250 267160 180800 175860 460370 426550 576660 976940 234540 306030 TRUE FALSE FALSE 176337.9148 298402.038 247685.4437 185466.7865 414533.9463 448883.4984 453451.8801 737343.9332 281610.0267 229742.3531 0.767546395 1.298855148 1.078100927 0.807281653 1.804342738 1.953856102 1.973740906 3.209438414 1.225764527 1 17.80965732 -5.865571448 4.770003492 2.002637536 1.018713423 0.346843328 0.571688349 0.214984618 8.151694686 0.174590607 0.200720792 1.36E-06 5.865571448 -0.983924114 VVSSVSSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 VVSSVSSSPR 10 0 P29375-2;P29375 P29375-2 KDM5A Lysine-specific demethylase 5A 1 0 VVSSVSS(0.008)S(0.992)PR 96.756 0.0022059 389830000 1013900 835730 577000 208560 764860 790230 919370 829310 733250 913620 TRUE FALSE FALSE 942830.8458 769503.7111 800429.8526 485538.22 668924.1268 692739.4571 689333.9019 640494.2167 796808.7004 684843.6053 1.376709717 1.123619619 1.168777581 0.708976789 0.976754578 1.011529423 1.006556674 0.935241582 1.16349002 1 19.38541504 -4.45662757 1.563172357 0.97738322 1.425561576 0.507524687 0.117378678 0.595335675 1.846175727 0.033600396 0.365973494 3.49E-05 4.45662757 0.448178357 VVSWLVLAEGAHSDAGS(ph)QGTDSHTDLPPPLER ddPTM_HeLa_A485_30min_R1 1 VVSWLVLAEGAHSDAGSQGTDSHTDLPPPLER 32 0 A0A087WWA7;O14640-2;O14640 A0A087WWA7 DVL1 Segment polarity protein dishevelled homolog DVL-1 1 0 VVSWLVLAEGAHS(0.008)DAGS(0.943)QGT(0.04)DS(0.007)HT(0.002)DLPPPLER 123.56 2.62E-06 36550000 12187 16892 12579 12654 21297 12205 14386 12257 9826.9 12577 TRUE FALSE FALSE 14897.95611 18867.37246 17232.49556 13345.25598 19176.5959 12844.03493 11312.31358 9250.951532 11799.06869 9441.785363 1.577874897 1.998284406 1.825131042 1.413425053 2.031034933 1.360339643 1.198111707 0.979788374 1.249664999 1 13.20484397 -6.520555244 3.210639139 1.107340447 1.765314609 0.734340617 0.187974448 0.128200848 2.742416785 0.072981918 0.058218323 3.02E-07 6.520555244 0.657974162 VVSWLVLAEGAHSDAGS(ph)QGTDSHTDLPPPLER ddPTM_HeLa_A486_30min_R1 2 VVSWLVLAEGAHSDAGSQGTDSHTDLPPPLER 32 0 A0A087WWA7;O14640-2;O14640 A0A087WWA7 DVL1 Segment polarity protein dishevelled homolog DVL-1 1 0 VVSWLVLAEGAHS(0.018)DAGS(0.709)QGT(0.202)DS(0.054)HT(0.018)DLPPPLER;VVSWLVLAEGAHS(0.043)DAGS(0.351)QGT(0.351)DS(0.247)HT(0.009)DLPPPLER ; 122.35 5.28E-06 82944000 41051 39253 29200.3 15843 44550 28587.5 42682 36441 21817.9 33127 TRUE FALSE FALSE 38173.53689 36142.44932 40507.43817 36883.30466 38962.12359 25060.66491 32002.51216 28144.1798 23709.09314 24831.78358 1.537285341 1.455491476 1.631273808 1.485326438 1.569042492 1.009217273 1.288772192 1.133393407 0.954788167 1 14.59990027 -6.257080889 24.99794237 1.098792414 1.533741704 0.846235799 0.097492971 147.3166665 844930.2018 0.032689779 0.031608304 5.53E-07 6.257080889 0.43494929 VVTS(ph)ENEAGK ddPTM_HeLa_A486_30min_R1 2 VVTSENEAGK 10 0 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VVT(0.027)S(0.973)ENEAGK;VVT(0.205)S(0.795)ENEAGK ; 186.51 1.01E-09 686400000 1154450 1243350 697520 548550 1165890 1403650 1527170 1514690 1061960 1849590 TRUE FALSE FALSE 1073529.017 1144822.418 967618.4242 1277052.122 1019653.205 1230481.934 1145055.913 1169828.152 1154011.548 1386440.625 0.774305799 0.825727692 0.697915516 0.921101199 0.735446716 0.887511453 0.825896106 0.843763614 0.832355549 1 20.4029544 -14 0.150603502 1.663519025 0.75971028 0.48927401 0.059805546 109.1786854 0.973528022 21.60275008 0.279410575 1.00E-14 14 -0.903808745 VVTVFSVADGYSENNVFYGHHAK ddPTM_HeLa_A486_30min_R1 1 VVTVFSVADGYSENNVFYGHHAK 23 0 O75083;O75083-3 O75083 WDR1 WD repeat-containing protein 1 0 0 156.67 1.48E-17 11669000 7502 11348 8687.4 4855.2 16818 13866 14610 14204 11121 11446 FALSE FALSE TRUE 6976.14854 10448.74315 12051.39394 11303.15097 14708.52962 12155.3539 10954.42347 10970.05927 12084.97723 8579.847099 0.813085415 1.217823934 1.404616399 1.31740704 1.714311391 1.416733161 1.276762085 1.278584472 1.408530606 1 13.06673622 -4.291151622 2.35752032 1.373540041 0.700000045 0.477995144 0.168022516 0.432855233 3.05251146 0.043717628 0.581875286 5.12E-05 4.291151622 -0.673539996 VVTVHLEK ddPTM_HeLa_A485_30min_R1 2 VVTVHLEK 8 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 0 ; ; 92.439 0.01105 90354000 215811 194808 178742 258780 277120 227070 253380 223968 233820 388690 FALSE FALSE TRUE 263817.4124 217589.101 244866.1039 272916.4961 249528.9598 238959.0341 199243.2931 169039.4968 280745.5293 291796.7363 0.90411365 0.745687233 0.839166699 0.935296603 0.855146507 0.818922916 0.682815358 0.579305646 0.962127037 1 18.15460422 -6.530844587 24.00879653 0.768127706 0.851622616 0 0.124691213 303.5776634 914956.5999 0.046514547 0.036105396 2.95E-07 6.530844587 0.08349491 VVTVHLEK ddPTM_HeLa_A486_30min_R1 2 VVTVHLEK 8 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 0 ; ; 105.57 0.0035619 109062000 245310 310070 209986 86874 299960 333050 333560 330980 287550 337980 FALSE FALSE TRUE 228115.0358 285498.9239 291298.2028 202247.0624 262336.2198 291961.6772 250099.76 255623.0792 312475.0655 253347.6081 0.900403353 1.126905938 1.149796538 0.798298685 1.035479363 1.152415369 0.987180269 1.008981617 1.233384707 1 17.95075868 -6.002539525 24.98578432 1.073885704 1.002293406 0.097044313 0.117506254 302.6793019 2978035.616 0.037384233 0.041690008 9.94E-07 6.002539525 -0.071592298 VVVFIKPTCPYCR ddPTM_HeLa_A485_30min_R1 2 VVVFIKPTCPYCR 13 1 P35754 P35754 GLRX Glutaredoxin-1 0 0 ; ; 152.74 1.26E-05 128585000 91179 105267 128030 102545 154653 108870 126299 131023 101716 134007 FALSE FALSE TRUE 111461.454 117577.0599 175393.6248 108146.7737 139255.2043 114570.2649 99314.18688 98889.40381 122129.4682 100601.5211 1.107949987 1.168740379 1.743449034 1.075001377 1.384225634 1.138852212 0.987203631 0.982981199 1.213992262 1 16.61829259 -6.466964994 4.625794641 1.045730403 1.300351802 0.287821563 0.186188167 0.283665049 12.66287285 0.068694038 0.058477431 3.41E-07 6.466964994 0.254621399 VVVFIKPTCPYCR ddPTM_HeLa_A486_30min_R1 2 VVVFIKPTCPYCR 13 1 P35754 P35754 GLRX Glutaredoxin-1 0 0 ; ; 150.21 2.04E-05 129357000 101611 131052 114703 38078 154228 121969 133176 137695 111672 133125 FALSE FALSE TRUE 94488.59362 120666.9622 159119.0735 88647.50836 134883.2861 106921.7049 99853.95621 106344.8544 121351.8189 99789.6335 0.94687785 1.209213402 1.594545123 0.888343861 1.351676335 1.071471065 1.000644583 1.065690399 1.216076406 1 16.60660233 -6.44027853 24.99675642 1.070355886 1.204361378 0.098053832 0.192665328 226.6923679 68599.76282 0.06717662 0.059244189 3.63E-07 6.44027853 0.134005493 VVVHPLVLLSVVDHFNR ddPTM_HeLa_A485_30min_R1 2 VVVHPLVLLSVVDHFNR 17 0 H3BNT7;H3BTM8;P51665;H3BQV2 H3BNT7 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 0 ; ; 281.07 2.71E-55 102456000 56387 71063 72225 42291 75136 58300 77841 86255 51957 74053 FALSE FALSE TRUE 68930.09362 79373.19968 98944.03303 44601.25024 67655.19602 61352.49785 61209.63445 65100.82601 62384.29332 55592.94994 1.239907105 1.427756573 1.779794617 0.802282489 1.216974384 1.103602128 1.101032316 1.171026651 1.122161954 1 15.76261432 -5.262850378 24.99955318 1.089328141 1.477013135 0.568235089 0.162813993 95.20114235 1686747.67 0.044748995 0.070664018 5.46E-06 5.262850378 0.387684994 VVVHPLVLLSVVDHFNR ddPTM_HeLa_A486_30min_R1 3 VVVHPLVLLSVVDHFNR 17 0 H3BNT7;H3BTM8;P51665;H3BQV2 H3BNT7 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 0 ;; ;; 248.23 1.11E-34 95987000 69269 79837 77077 25215.2 154048 72815 91136 88487 74980 83017 FALSE FALSE TRUE 64413.60081 73510.42536 106923.2786 58702.25991 134725.8634 63831.82563 68332.80886 68340.44176 81479.32677 62229.00285 1.035105784 1.18128882 1.718222592 0.943326379 2.165001161 1.025756845 1.098086193 1.098208852 1.309346495 1 15.92529951 VVVLGLLPR ddPTM_HeLa_A486_30min_R1 1 VVVLGLLPR 9 0 M0R389;Q15102 M0R389 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma 0 0 121.29 0.0039764 7003000 11952 12159 11887 7447.7 15667 12133 13484 14458 10342 14387 FALSE FALSE TRUE 11114.22652 11195.47656 16489.96474 17338.62199 13701.89877 10636.15382 10110.16058 11166.22902 11238.45289 10784.40156 1.03058352 1.038117553 1.529057005 1.607750036 1.270529357 0.986253504 0.937479982 1.035405531 1.042102599 1 13.3966585 -6.227434364 5.475024189 0.997945747 1.313587026 0.42182836 0.172342937 0.213415753 18.30003642 0.065905652 0.06441313 5.92E-07 6.227434364 0.315641279 VVVS(ph)PTK ddPTM_HeLa_A485_30min_R1 5 VVVSPTK 7 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VVVS(0.995)PT(0.005)K;VVVS(0.978)PT(0.022)K;VVVS(0.993)PT(0.007)K;VVVS(0.992)PT(0.008)K;VVVS(1)PTK ;;;; 152.38 0.00077972 17495880000 7319640 5799710 5381440 11880230 8569420 6387990 10088030 8711950 5947200 13937330 TRUE FALSE FALSE 8947868.666 6477935.634 7372258.596 12529216.88 7716218.456 6722455.279 7932639.979 6575330.603 7140748.489 10463010.13 0.855190672 0.61912734 0.70460207 1.197477277 0.737475962 0.642497254 0.758160403 0.628435844 0.68247554 1 23.31879463 -5.972803465 24.99936435 0.716737222 0.836742058 0.069509627 0.170799193 549.7984544 505378.4827 0.054019047 0.061250607 1.06E-06 5.972803465 0.120004836 VVVS(ph)PTK ddPTM_HeLa_A486_30min_R1 6 VVVSPTK 7 0 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VVVS(1)PTK;VVVS(1)PTK;VVVS(0.991)PT(0.009)K;VVVS(0.993)PT(0.007)K;VVVS(0.82)PT(0.18)K;VVVS(0.997)PT(0.003)K ;;;;; 179.28 0.00062354 11665970000 8021390 9926380 5770090 4200420 8628090 9997680 12198000 11186400 7815520 11149300 TRUE FALSE FALSE 7459131.983 9139777.498 8004423.376 9778790.037 7545874.498 8764267.891 9145931.383 8639500.917 8492975.566 8357442.71 0.892513684 1.093609351 0.957759886 1.170069646 0.902892758 1.04867819 1.094345687 1.033749344 1.016217025 1 22.99463013 -4.246131988 23.98660802 1.03623316 0.892513499 0.266718429 0.070988418 2108.623396 3304108.639 0.016485184 0.362160126 5.67E-05 4.246131988 -0.143719661 VVVS(ph)PTKK ddPTM_HeLa_A485_30min_R1 3 VVVSPTKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VVVS(0.916)PT(0.084)KK;VVVS(0.5)PT(0.5)KK;VVVS(0.805)PT(0.195)KK ;; 110.39 0.00076206 61059040000 19022890 12860050 8489001 34313130 20860680 18821410 28221570 25834770 14738641 47957930 TRUE FALSE FALSE 23254466.25 14363920.98 11629435.73 36187569.41 18783717.45 19806869.92 22191801.02 19498752.15 17696551.06 36002900.65 0.645905353 0.398965659 0.323013855 1.005129274 0.521727892 0.550146504 0.616389253 0.541588366 0.491531258 1 25.10160981 -10.49452521 3.111150626 1.011562309 0.565886854 0.363282234 0.172352628 64941356.45 79621771.04 6477684.818 0.044105024 3.20E-11 10.49452521 -0.445675455 VVVS(ph)PTKK ddPTM_HeLa_A486_30min_R1 2 VVVSPTKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VVVS(0.804)PT(0.196)KK;VVVS(0.838)PT(0.162)KK ; 121.9 0.0018444 13405180000 4785180 5162990 1976890 3149640 4856330 7522900 8059200 7773200 4294830 9312300 TRUE FALSE FALSE 4449763.593 4753855.869 2742394.751 7332521.094 4247203.808 6594801.085 6042702.918 6003412.048 4667109.322 6980439.467 0.637461812 0.681025298 0.392868495 1.050438318 0.608443613 0.944754426 0.865662248 0.860033537 0.668598209 1 22.73488644 -5.259178485 24.99998761 0.844695201 0.581509221 0.445576653 0.145801588 192.0140873 2123195.618 0.038162911 0.062205361 5.51E-06 5.259178485 -0.26318598 VVVSPT(ph)KK ddPTM_HeLa_A485_30min_R1 1 VVVSPTKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VVVS(0.216)PT(0.784)KK 99.973 0.0029433 13446000000 2213300 1427400 990470 3756600 2739200 2406100 3536600 3015700 1688800 5782300 TRUE FALSE FALSE 2705640.949 1594322.013 1356886.07 3961813.546 2466475.63 2532079.675 2780976.519 2276094.847 2027726.669 4340879.025 0.623293331 0.367280913 0.312583249 0.91267541 0.568197274 0.583310353 0.640648243 0.524339617 0.467123515 1 22.04955579 -11.14478555 2.410449094 1.991488182 0.556099727 0.42198405 0.156068804 8158465.702 2208772.433 44193603.68 0.039951074 7.16E-12 11.14478555 -1.435388455 VVVSPT(ph)KK ddPTM_HeLa_A486_30min_R1 2 VVVSPTKK 8 1 P19338;C9J1H7;C9JWL1;C9JYW2;C9JLB1 P19338 NCL Nucleolin 1 0 VVVS(0.213)PT(0.787)KK;VVVS(0.366)PT(0.634)KK ; 125.75 0.00079651 24089000000 12422000 14510500 5523100 8746600 12860400 20032800 21828400 20967200 12078300 25166100 TRUE FALSE FALSE 11551281.95 13360635.13 7661792.234 20362526.83 11247328.71 17561356.81 16366703.44 16193426.27 13125256.77 18864344.76 0.61233412 0.708248037 0.406152047 1.079418718 0.596221542 0.930928534 0.86759989 0.858414458 0.695770616 1 24.16915865 -5.254732524 24.99687508 0.847426071 0.588845079 0.436353345 0.147948803 527.9311758 1967627.738 0.038131975 0.064165857 5.56E-06 5.254732524 -0.258580992 VVVTMEHSAK ddPTM_HeLa_A485_30min_R1 1 VVVTMEHSAK 10 0 P55809;E9PDW2;P55809-2 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 0 0 76.943 0.019969 4838400 33932 35665 39422 40793 54352 34642 44798 45268 40092 67515 FALSE FALSE TRUE 41480.05634 39835.71151 54005.83829 43021.4183 48940.52404 36455.80155 35226.54133 34165.95202 48138.09665 50684.75302 0.818393183 0.785950589 1.065524345 0.848803945 0.965586712 0.719265645 0.695012587 0.674087373 0.949754981 1 15.6292642 -6.263590204 24.99772914 0.780216358 0.897391955 0.095331455 0.123784507 356.6745396 4145396.748 0.042084872 0.038929538 5.45E-07 6.263590204 0.117175597 VVVTT(ph)PLHR ddPTM_HeLa_A485_30min_R1 2 VVVTTPLHR 9 0 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 VVVT(0.051)T(0.949)PLHR;VVVT(0.019)T(0.981)PLHR ; 108.9 0.0012604 335050000 138961 192842 184344 137252 236780 210098 216052 227974 149582 194850 TRUE FALSE FALSE 169872.395 215393.1944 252540.5168 144749.7292 213205.3518 221098.4064 169890.7252 172063.0191 179601.7354 146277.4809 1.161302437 1.472497291 1.726448358 0.989555797 1.457540494 1.511499959 1.161427748 1.176278248 1.227815342 1 17.15834816 -7.597234763 0.662396097 1.014061842 1.396659713 0.254543017 0.197859634 0.9656123 0.931604872 0.193879686 0.088939646 2.53E-08 7.597234763 0.38259787 VVVTT(ph)PLHR ddPTM_HeLa_A486_30min_R1 3 VVVTTPLHR 9 0 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 VVVT(0.018)T(0.982)PLHR;VVVT(0.046)T(0.954)PLHR;VVVT(0.007)T(0.993)PLHR ;; 101.93 0.0020483 495850000 190657 213914 181933 62162 242899 184299 205416 233715 193189 206411 TRUE FALSE FALSE 177292.9289 196962.6756 252382.3299 144716.2775 212432.3425 161562.0632 154018.7441 180503.1965 209934.7781 154724.3421 1.145863194 1.272990875 1.631174038 0.935316806 1.372972989 1.044192924 0.995439645 1.166611498 1.356830963 1 17.23934066 -5.277652904 24.99937034 1.133054663 1.342307569 0.249482967 0.178672861 1193.382216 1840053.901 0.050097831 0.074565798 5.28E-06 5.277652904 0.209252906 VVYAFS(ph)PK ddPTM_HeLa_A485_30min_R1 1 VVYAFSPK 8 0 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 VVYAFS(1)PK 82.261 0.005592 0 296980 325950 222950 493120 414720 369690 490220 549320 285560 662460 TRUE FALSE FALSE 363042.1764 364067.0171 305428.4827 520057.897 373429.0206 389046.3968 385480.4923 414598.4087 342869.2727 497320.9137 0.729995796 0.732056519 0.614147675 1.045718937 0.750881393 0.782284408 0.77511418 0.833663732 0.689432645 1 18.92381758 -11.28840184 2.360225953 2.072731305 0.776286846 0.288471323 0.107004903 4162658.961 786658.3574 23963742.45 0.028288741 5.15E-12 11.28840184 -1.296444459 VWDLAQQVVLSSYR ddPTM_HeLa_A486_30min_R1 2 VWDLAQQVVLSSYR 14 0 Q9BQA1;H0Y711 Q9BQA1 WDR77 Methylosome protein 50 0 0 ; ; 210.79 5.78E-16 19138000 9552.8 14237.7 14039.3 4261.5 17822.5 13799.7 16114.6 17523.2 14707.1 16297.2 FALSE FALSE TRUE 8883.198051 13109.4528 19475.69295 9920.987364 15587.03586 12097.23332 12082.55664 13533.54989 15981.92327 12216.27504 0.727160941 1.073113756 1.594241524 0.812112312 1.275923783 0.990255481 0.989054077 1.107829501 1.308248481 1 13.57651683 -4.28458731 4.985452028 1.133839499 0.713109454 0.255230224 0.206783036 0.206221888 14.67075219 0.049992888 0.278318758 5.19E-05 4.28458731 -0.420730045 VWEDRPS(ph)SAGSTPFPYNPLIMR ddPTM_HeLa_A485_30min_R1 1 VWEDRPSSAGSTPFPYNPLIMR 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VWEDRPS(0.5)S(0.5)AGS(0.001)TPFPYNPLIMR 83.881 0.003589 116180000 72094 91516 84581 67886 96090 74604 95662 97435 69757 91593 TRUE FALSE FALSE 88131.06158 102218.0001 115871.0316 71594.44028 86522.94221 78510.15008 75223.03221 73538.91348 83756.59005 68760.55074 1.281709652 1.486579136 1.685138213 1.041213887 1.258322414 1.141790594 1.093985307 1.069492793 1.218090739 1 16.06929348 -5.273046634 24.9693896 1.126344921 1.48468602 0.676484603 0.116166989 408.3726826 878485.6779 0.032521349 0.048687148 5.33E-06 5.273046634 0.358341098 VWEDRPS(ph)SAGSTPFPYNPLIMR ddPTM_HeLa_A486_30min_R1 1 VWEDRPSSAGSTPFPYNPLIMR 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VWEDRPS(0.494)S(0.494)AGS(0.011)T(0.001)PFPYNPLIMR 116.35 9.97E-05 191550000 168800 191770 148060 60624 190160 163860 170600 170910 150210 178940 TRUE FALSE FALSE 156967.9917 176573.4468 205392.7972 141135.7358 166308.3596 143644.6192 127914.0756 131997.5239 163230.3237 134132.2593 1.170247877 1.316412977 1.53127069 1.052213215 1.239883385 1.070917764 0.9536414 0.984084848 1.216935617 1 17.03329673 -5.789158828 1.396015318 1.041659409 1.321143759 0.429655214 0.128675316 0.387042802 1.576439047 0.050326852 0.068449547 1.62E-06 5.789158828 0.27948435 VWEDRPSS(ph)AGSTPFPYNPLIMR ddPTM_HeLa_A485_30min_R1 3 VWEDRPSSAGSTPFPYNPLIMR 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VWEDRPS(0.173)S(0.825)AGS(0.002)T(0.001)PFPYNPLIMR;VWEDRPS(0.454)S(0.546)AGSTPFPYNPLIMR;VWEDRPS(0.214)S(0.786)AGSTPFPYNPLIMR ;; 207.31 2.30E-27 3958770000 407780 536450 517380 372490 588770 470110 514140 588520 425770 507680 TRUE FALSE FALSE 498489.2542 599183.161 708780.392 392838.1855 530149.9915 494724.2327 404289.7889 444184.5472 511218.1336 381124.7192 1.307942595 1.572144579 1.85970722 1.030733946 1.39101445 1.298063883 1.060780811 1.165457198 1.341340795 1 18.53990366 -5.272012717 24.99954049 1.199062066 1.579152787 0.515995825 0.175332925 571.471918 1351184.04 0.049365008 0.074080946 5.35E-06 5.272012717 0.380090721 VWEDRPSS(ph)AGSTPFPYNPLIMR ddPTM_HeLa_A486_30min_R1 3 VWEDRPSSAGSTPFPYNPLIMR 22 1 C9J0Q5;C9JE98;Q9Y618;Q9Y618-4;Q9Y618-5;C9J7T7;A0A384DVL6;Q9Y618-2 C9J0Q5 NCOR2 Nuclear receptor corepressor 2 1 0 VWEDRPS(0.216)S(0.78)AGS(0.003)T(0.001)PFPYNPLIMR;VWEDRPS(0.22)S(0.78)AGSTPFPYNPLIMR;VWEDRPS(0.003)S(0.997)AGSTPFPYNPLIMR ;; 231.08 7.22E-37 3374220000 620020 656600 488402 205529 710160 549740 607520 601060 487222 603840 TRUE FALSE FALSE 576559.7998 604568.6247 677524.3343 478481.8989 621085.1108 481918.6681 455512.0703 464211.759 529454.7953 452634.5337 1.273786591 1.335666149 1.496846316 1.057104271 1.372155822 1.064697084 1.006357307 1.025577424 1.169718075 1 18.78798713 -6.109481767 1.209035855 1.043115222 1.336233973 0.519709633 0.117047164 0.368021043 1.116455671 0.054322595 0.056145909 7.77E-07 6.109481767 0.293118751 VWQVTIGTR ddPTM_HeLa_A485_30min_R1 2 VWQVTIGTR 9 0 D6RF23;H0Y8R5;H0YAF8;D6RAC2;J3KPE3;P63244;D6RHJ5;D6RHH4 D6RF23 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 ; ; 238.31 1.18E-23 309680000 185205 199023 227380 186220 263570 197310 272740 283200 182386 252580 FALSE FALSE TRUE 226403.2133 222297.0086 311497.3241 196392.7271 237328.0453 207640.8465 214466.8709 213744.756 218989.1973 189616.4544 1.194006153 1.172350835 1.642775808 1.035736733 1.251621575 1.09505711 1.131056224 1.127247931 1.154906086 1 17.53272464 VWQVTIGTR ddPTM_HeLa_A486_30min_R1 2 VWQVTIGTR 9 0 D6RF23;H0Y8R5;H0YAF8;D6RAC2;J3KPE3;P63244;D6RHJ5;D6RHH4 D6RF23 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 ; ; 215.14 1.47E-16 271540000 166139 202286 199056 67117 232290 212252 227880 222930 188493 214450 FALSE FALSE TRUE 154493.514 186256.1206 276135.8141 156251.7679 203154.0222 186066.5063 170862.0137 172173.7055 204831.725 160750.3242 0.961077465 1.158667154 1.717793202 0.972015259 1.263786081 1.157487596 1.062903074 1.071062882 1.27422278 1 17.29446212 -6.217603163 1.460165449 1.108713898 1.237796517 0.053757207 0.206958979 1.3054523 5.588077816 0.094143988 0.088238567 6.06E-07 6.217603163 0.129082619 VWS(ph)PLVTEEGK ddPTM_HeLa_A485_30min_R1 6 VWSPLVTEEGK 11 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 VWS(1)PLVTEEGK;VWS(0.999)PLVT(0.001)EEGK;VWS(0.999)PLVT(0.001)EEGK;VWS(1)PLVTEEGK;VWS(0.998)PLVT(0.002)EEGK;VWS(0.992)PLVT(0.008)EEGK ;;;;; 193.15 4.64E-11 495218000 949356 560969 489839 1584242 1019154 610395 1016200 661859 710300 2037660 TRUE FALSE FALSE 1160536.967 626569.4448 671050.83 1670785.129 917683.4493 642354.3383 799080.5684 499537.0425 852850.6947 1529708.862 0.758665257 0.409600454 0.438678788 1.092224259 0.599907258 0.419919342 0.522374282 0.326556938 0.557524844 1 20.54482567 -10.36100539 5.858392341 1.000078654 0.564282811 0.276125846 0.20895818 0.000223799 2.44E-05 0.210930849 0.05114907 4.36E-11 10.36100539 -0.435795842 VWS(ph)PLVTEEGK ddPTM_HeLa_A486_30min_R1 5 VWSPLVTEEGK 11 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 VWS(1)PLVTEEGK;VWS(0.997)PLVT(0.003)EEGK;VWS(1)PLVTEEGK;VWS(1)PLVTEEGK;VWS(1)PLVTEEGK ;;;; 262.35 1.68E-27 692944000 1190815 1339448 632809 619990 1096808 1616960 1772600 1592710 1034057 1695640 TRUE FALSE FALSE 1107345.018 1233305.262 877849.592 1443368.053 959236.1133 1417475.915 1329076.731 1230084.702 1123689.893 1271040.707 0.871211293 0.97031138 0.690654191 1.135579722 0.754685596 1.115208905 1.04566024 0.967777581 0.884070736 1 20.27757881 -5.265156893 24.99293804 0.983011687 0.856684204 0.22064388 0.121576687 530.863364 3569014.844 0.032815577 0.050867333 5.43E-06 5.265156893 -0.126327484 VWS(ph)PLVTEEGKR ddPTM_HeLa_A485_30min_R1 4 VWSPLVTEEGKR 12 1 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 VWS(0.997)PLVT(0.003)EEGKR;VWS(1)PLVTEEGKR;VWS(0.999)PLVT(0.001)EEGKR;VWS(1)PLVTEEGKR ;;; 218.68 3.75E-23 1567970000 1251050 673130 656384 1888580 1365060 784060 1167420 752280 994930 2473690 TRUE FALSE FALSE 1529341.756 751846.698 899207.756 1991748.343 1229149.833 825112.1692 917991.1801 567782.1505 1194603.325 1857044.608 0.823535283 0.404861948 0.484214408 1.072536618 0.661884926 0.444314674 0.494329095 0.305745025 0.643281976 1 20.82457704 -8.032353639 23.38252545 1.000000009 0.580794845 0.25263091 0.21197741 2881.628929 2082600.695 0.215018354 0.0555175 9.28E-09 8.032353639 -0.419205165 VWS(ph)PLVTEEGKR ddPTM_HeLa_A486_30min_R1 4 VWSPLVTEEGKR 12 1 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 VWS(1)PLVTEEGKR;VWS(1)PLVTEEGKR;VWS(1)PLVTEEGKR;VWS(1)PLVTEEGKR ;;; 244.44 3.47E-28 3073030000 1884270 2138210 1016580 926290 1799770 2491940 2638370 2566560 1632790 2406110 TRUE FALSE FALSE 1752192.403 1968770.452 1410227.001 2156449.932 1574026.064 2184509.779 1978221.92 1982210.316 1774321.552 1803604.395 0.971494862 1.091575546 0.781893748 1.195633554 0.872711371 1.211191204 1.096815868 1.099027215 0.983764265 1 20.7824515 -6.258177881 24.99972686 1.085514918 0.989390567 0.134320843 0.119890781 595.6823323 4565975.264 0.038309027 0.036768746 5.52E-07 6.258177881 -0.096124351 VYAILTHGIFSGPAISR ddPTM_HeLa_A485_30min_R1 2 VYAILTHGIFSGPAISR 17 0 B7ZB02;H7C540;B1ALA9;A0A0B4J207;A0A2R8Y7H4;P60891-2;P60891;P21108;P11908;P11908-2 B7ZB02 PRPS1;PRPS2;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 0 0 ; ; 203.04 8.43E-19 233310000 121023 166189 186516 123341 239150 158638 193530 194039 139073 194587 FALSE FALSE TRUE 147944.1488 185623.3579 255516.03 130078.8065 215339.3863 166944.0404 152180.7345 146450.631 166983.6754 146080.042 1.012760859 1.270696225 1.749150852 0.890462549 1.474119143 1.142825797 1.041762669 1.00253689 1.143097121 1 17.15639956 -6.50337611 10.20333259 1.053384954 1.285994816 0.196243419 0.222454684 0.755187792 387.6219537 0.078848877 0.067024175 3.14E-07 6.50337611 0.232609862 VYAILTHGIFSGPAISR ddPTM_HeLa_A486_30min_R1 2 VYAILTHGIFSGPAISR 17 0 B7ZB02;H7C540;B1ALA9;A0A0B4J207;A0A2R8Y7H4;P60891-2;P60891;P21108;P11908;P11908-2 B7ZB02 PRPS1;PRPS2;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 0 0 ; ; 192.96 1.90E-15 220160000 186254 198172 222191 55689 268280 186215 245300 224250 200739 186459 FALSE FALSE TRUE 173198.5564 182468.129 308229.3057 129646.8064 234629.8208 163241.6866 183923.3455 173193.1703 218139.2181 139768.4528 1.23918204 1.305502961 2.205285239 0.927582754 1.678703714 1.16794372 1.315914585 1.239143504 1.560718559 1 17.09267924 -5.898762153 1.376773849 1.287489799 1.499281832 0.063977446 0.341206615 1.318135418 5.204602693 0.135352823 0.16674614 1.26E-06 5.898762153 0.211792034 VYEDSGIPLPAES(ph)PK ddPTM_HeLa_A485_30min_R1 4 VYEDSGIPLPAESPK 15 0 F8W038;F8W1H0;H0YIS7;Q8IXM2-2;Q8IXM2;Q8IXM2-3 F8W038 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 0 VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK ;;; 279.91 2.19E-58 1014320000 1371480 999330 804120 2953000 1550290 1175190 2040510 1375520 1135020 3891600 TRUE FALSE FALSE 1676560.994 1116192.95 1101597.45 3114314.913 1395937.684 1236721.131 1604538.369 1038171.563 1362808.103 2921495.74 0.573870765 0.382062152 0.377066253 1.066000155 0.477816094 0.423317794 0.54921811 0.355356179 0.466476156 1 21.47827575 -9.952993929 4.579945147 1.000006673 0.51895258 0.352519067 0.195555506 268547913.1 865950573.6 37826.32337 0.05025711 1.11E-10 9.952993929 -0.481054093 VYEDSGIPLPAES(ph)PK ddPTM_HeLa_A486_30min_R1 4 VYEDSGIPLPAESPK 15 0 F8W038;F8W1H0;H0YIS7;Q8IXM2-2;Q8IXM2;Q8IXM2-3 F8W038 C17orf49;RNASEK-C17orf49;BAP18 Chromatin complexes subunit BAP18 1 0 VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK ;;; 316.8 4.64E-78 923770000 1349921 1425700 689221 1110365 1170209 1680250 2339150 1988100 1305390 3025050 TRUE FALSE FALSE 1255298.509 1312722.34 956105.8292 2584985.835 1023430.475 1472957.839 1753869.929 1535453.03 1418542.256 2267557.79 0.553590526 0.578914613 0.421645628 1.13998675 0.451336006 0.649578963 0.773462064 0.677139536 0.625581523 1 21.11270789 -14 0.173307088 2.320159447 0.580660625 0.239305919 0.189353457 202.6265044 1.924180005 92.4789777 0.646049448 1.00E-14 14 -1.739498822 VYEGERPLTK ddPTM_HeLa_A485_30min_R1 1 VYEGERPLTK 10 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 89.403 0.0042973 114910000 232050 277650 214100 232440 288400 275190 316690 379390 228920 326010 FALSE FALSE TRUE 283668.7219 310118.7523 293304.4994 245137.6086 259685.8834 289598.5229 249026.5944 286344.0076 274862.1442 244741.7068 1.15905346 1.267126704 1.198424671 1.001617631 1.061061013 1.183282272 1.017507795 1.169984517 1.123070309 1 17.90090045 -5.108382743 7.333926112 1.08778415 1.2178219 0.439667084 0.066191645 0.238657111 14.21919522 0.017647787 0.030820796 7.79E-06 5.108382743 0.13003775 VYEGERPLTK ddPTM_HeLa_A486_30min_R1 2 VYEGERPLTK 10 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 103.34 0.0044891 95818000 465340 473440 359440 189386 717140 485520 555600 524190 427270 531650 FALSE FALSE TRUE 432722.069 435922.8902 498624.7941 440900.179 627189.6141 425621.4788 416583.0035 404843.38 464306.1076 398521.3795 1.085818958 1.0938507 1.251187062 1.10634009 1.573791637 1.06800162 1.045321593 1.015863642 1.165072017 1 18.6042976 -6.475968293 24.99998923 1.057710409 1.221306804 0.26040959 0.137738661 602.5959872 321141.7489 0.0491805 0.043371852 3.34E-07 6.475968293 0.163596395 VYEHT(ph)SRFSPK ddPTM_HeLa_A485_30min_R1 2 VYEHTSRFSPK 11 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VYEHT(0.333)S(0.333)RFS(0.333)PK;VYEHT(0.333)S(0.333)RFS(0.333)PK ; 62.088 0.028879 1379450000 1014790 1679530 1350770 390090 1813850 1964420 1601400 2393470 1551120 603810 TRUE FALSE FALSE 1240526.535 1875936.424 1850476.033 411399.6289 1633256.725 2067273.994 1259247.808 1806467.73 1862415.556 453291.2793 2.736709465 4.138478963 4.082311127 0.907583375 3.603106435 4.56058629 2.778010223 3.98522498 4.108650754 1 18.79007888 VYEHT(ph)SRFSPK ddPTM_HeLa_A486_30min_R1 1 VYEHTSRFSPK 11 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VYEHT(0.459)S(0.459)RFS(0.082)PK 61.212 0.030824 644860000 905830 1050300 1040400 44499 1583900 903820 720940 971590 820300 254110 TRUE FALSE FALSE 842335.9947 967070.4029 1443270.743 103595.9209 1385232.493 792315.8778 540553.1867 750380.1667 891404.2645 190479.202 4.422194055 5.077039344 7.577051602 0.543869986 7.272355606 4.159592593 2.837859362 3.93943359 4.679798398 1 17.53927396 -9.235889873 0.270203698 3.89E-11 5.222534252 0.246924397 1.889348199 11.67162433 1.165403953 16.89354628 2.867366487 5.81E-10 9.235889873 5.222534252 VYEHTS(ph)RFSPK ddPTM_HeLa_A485_30min_R1 2 VYEHTSRFSPK 11 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VYEHT(0.295)S(0.352)RFS(0.352)PK;VYEHT(0.003)S(0.954)RFS(0.043)PK ; 140.82 2.03E-06 1221470000 590690 1237090 1044930 246840 1546810 1229750 1202720 1606970 1058940 531570 TRUE FALSE FALSE 722086.9526 1381756.914 1431493.09 260324.2442 1392804.165 1294137.808 945749.0467 1212858.088 1271459.545 399059.3818 1.809472438 3.462534593 3.587168114 0.652344628 3.490217819 3.242970514 2.369945652 3.039292254 3.186141218 1 18.60624392 VYEHTS(ph)RFSPK ddPTM_HeLa_A486_30min_R1 1 VYEHTSRFSPK 11 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VYEHT(0.389)S(0.489)RFS(0.122)PK 65.563 0.015267 1203700000 1383000 1698500 1688300 52551 2570400 1370800 1126300 1553000 1343000 419610 TRUE FALSE FALSE 1286058.842 1563904.674 2342054.974 122341.3838 2247996.464 1201684.633 844487.8272 1199415.802 1459412.321 314536.9248 4.088737253 4.972086108 7.446041433 0.388957143 7.147003378 3.820488275 2.684860697 3.813275031 4.639875977 1 18.26286987 -9.289963954 0.263891555 1.24E-11 5.031430219 0.221792677 1.912018969 13.42832274 1.254323788 18.55718702 3.049392784 5.13E-10 9.289963954 5.031430219 VYEHTSRFS(ph)PK ddPTM_HeLa_A485_30min_R1 4 VYEHTSRFSPK 11 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VYEHT(0.002)S(0.13)RFS(0.868)PK;VYEHT(0.002)S(0.11)RFS(0.888)PK;VYEHT(0.001)S(0.133)RFS(0.866)PK;VYEHTS(0.001)RFS(0.999)PK ;;; 136.33 9.88E-06 2466540000 1044300 2167550 1948390 625650 3069360 1820020 2469820 2804710 1659270 1207820 TRUE FALSE FALSE 1276600.932 2421026.117 2669180.54 659827.6753 2763763.741 1915313.433 1942122.78 2116850.475 1992270.269 906732.7023 1.407913191 2.670054925 2.943734723 0.727698112 3.048046833 2.112324203 2.141891183 2.334591517 2.197196885 1 19.79031779 -10.45244331 7.26769019 0.999874412 2.19790283 0.223184339 0.657013583 0.001268294 9.56E-05 0.603473184 0.146349053 3.53E-11 10.45244331 1.198028418 VYEHTSRFS(ph)PK ddPTM_HeLa_A486_30min_R1 4 VYEHTSRFSPK 11 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 VYEHTS(0.218)RFS(0.782)PK;VYEHT(0.018)S(0.175)RFS(0.807)PK;VYEHTSRFS(1)PK;VYEHT(0.001)S(0.023)RFS(0.976)PK ;;; 129.77 2.19E-05 1693300000 1452440 1608900 1260450 302299 2121270 1131340 1601160 1636750 1255610 855590 TRUE FALSE FALSE 1350631.456 1481404.904 1748529.996 703767.3493 1855200.537 991766.7734 1200532.833 1264097.755 1364447.286 641344.695 2.105936896 2.309841987 2.726349823 1.097330897 2.892673083 1.546386492 1.871899529 1.971011478 2.127478868 1 19.29074043 -10.75825742 0.227980735 7.31E-14 2.267836206 0.308017459 0.49026009 33.97490516 1.273949148 20.56004465 0.945183206 1.74E-11 10.75825742 2.267836206 VYFFFK ddPTM_HeLa_A485_30min_R1 1 VYFFFK 6 0 Q99985-2;Q99985 Q99985-2 SEMA3C Semaphorin-3C 0 0 135.52 0.014176 10218000 20497 25499 20098 19008 28373 23854 29837 23567 18126 29420 FALSE FALSE TRUE 25056.48694 28480.88624 27533.08655 20046.35891 25548.0845 25102.95855 23462.0812 17787.1563 21763.72194 22086.13543 1.134489418 1.289536883 1.246623097 0.90764448 1.156747615 1.136593526 1.062299073 0.805353945 0.985401996 1 14.43085338 -6.101907225 0.546711118 0.929040287 1.231451153 0.400457125 0.110582326 1.000567783 0.642915144 0.097440363 0.139046966 7.91E-07 6.101907225 0.302410866 VYFQS(ph)PPGAAGEGPGGADDEGPVRR ddPTM_HeLa_A485_30min_R1 4 VYFQSPPGAAGEGPGGADDEGPVRR 25 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 1 0 VY(0.001)FQS(0.999)PPGAAGEGPGGADDEGPVRR;VY(0.008)FQS(0.992)PPGAAGEGPGGADDEGPVRR;VYFQS(1)PPGAAGEGPGGADDEGPVRR;VY(0.002)FQS(0.998)PPGAAGEGPGGADDEGPVRR ;;; 88.927 0.0021157 2833760000 1042733 1216210 1148122 1121422 1632240 1214580 1594660 1723230 1133843 1563380 TRUE FALSE FALSE 1274685.358 1358435.18 1572860.105 1182682.444 1469728.454 1278173.531 1253947.864 1300605.141 1361394.89 1173658.138 1.086078916 1.157436852 1.340134793 1.007689042 1.252262824 1.089050968 1.068409806 1.108163526 1.159958634 1 20.16258081 -6.391549416 23.88210505 1.090825865 1.168874897 0.172424087 0.091151242 19.15215892 3499.741139 0.031176786 0.027495338 4.06E-07 6.391549416 0.078049032 VYFQS(ph)PPGAAGEGPGGADDEGPVRR ddPTM_HeLa_A486_30min_R1 4 VYFQSPPGAAGEGPGGADDEGPVRR 25 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 1 0 VYFQS(1)PPGAAGEGPGGADDEGPVRR;VYFQS(1)PPGAAGEGPGGADDEGPVRR;VYFQS(1)PPGAAGEGPGGADDEGPVRR;VYFQS(1)PPGAAGEGPGGADDEGPVRR ;;; 167.02 3.91E-14 3174440000 958860 1020700 999730 405929 1276710 950800 1125100 1103370 820150 998200 TRUE FALSE FALSE 891648.8656 939816.0147 1386852.23 945023.2265 1116573.127 833499.963 843588.0799 852156.7374 891241.2624 748244.2228 1.191654861 1.256028428 1.853475359 1.262987669 1.492257598 1.11394106 1.127423446 1.138875131 1.191110115 1 19.51314971 -6.269283115 24.1721899 1.123771713 1.418983512 0.409520437 0.178020123 407.147358 1254708.808 0.062994765 0.056606945 5.38E-07 6.269283115 0.295211799 VYGALMWALGK ddPTM_HeLa_A485_30min_R1 4 VYGALMWALGK 11 0 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 0 0 ;;; ;;; 213.35 8.39E-20 78670000 163417 155880 146399 180972 220959 144420 220738 188206 111564 255912 FALSE FALSE TRUE 199768.5479 174108.81 200558.0823 190858.0421 198959.5461 151981.6079 173575.523 142048.1834 133953.8715 192117.8481 1.039822952 0.906260463 1.043932587 0.993442535 1.035611985 0.791085312 0.903484631 0.739380463 0.697248448 1 17.55163203 -6.263669077 24.99540632 0.814778848 1.000047067 0.50732738 0.087090621 161.890299 1814816.144 0.029283823 0.027063554 5.45E-07 6.263669077 0.18526822 VYGALMWALGK ddPTM_HeLa_A486_30min_R1 2 VYGALMWALGK 11 0 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 0 0 ; ; 194.27 1.40E-13 49301000 80216 77067 57908 34766 82726 80200 101104 84506 71667 91789 FALSE FALSE TRUE 74593.27264 70959.93025 80331.52843 80937.00498 72349.73369 70305.73941 75806.70983 65265.82855 77879.15326 68804.43695 1.084134628 1.031327824 1.16753413 1.176334094 1.051527153 1.02181985 1.101770659 0.948570055 1.131891441 1 16.07021398 -5.967955133 23.71644069 1.040880197 1.112794811 0.253872805 0.060859062 162.9694189 120612.3674 0.018782466 0.021297118 1.08E-06 5.967955133 0.071914614 VYGALMWSLGK ddPTM_HeLa_A485_30min_R1 2 VYGALMWSLGK 11 0 A0A024R571;Q9H4M9;C9JDQ8;C9J2Z4;C9JC03;Q9NZN3;Q9H223 A0A024R571;Q9H223 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 0 0 ; ; 155.07 3.44E-05 47747000 59458 60701 50574 72189 80931 53829 80255 64205 39867.7 88250 FALSE FALSE TRUE 72684.22697 67799.45392 69283.42716 76132.50228 72873.22547 56647.4032 63107.86363 48458.62308 47868.7817 66250.89912 1.097105518 1.023374095 1.045773387 1.14915425 1.099958286 0.855043538 0.952558599 0.731440988 0.722537842 1 16.01565241 -6.278592323 7.443486501 0.841265194 1.081492073 0.642470841 0.085871304 0.117574202 36.06271675 0.030893811 0.028065035 5.27E-07 6.278592323 0.240226879 VYGALMWSLGK ddPTM_HeLa_A486_30min_R1 2 VYGALMWSLGK 11 0 A0A024R571;Q9H4M9;C9JDQ8;C9J2Z4;C9JC03;Q9NZN3;Q9H223 A0A024R571;Q9H223 EHD1;EHD3;EHD4 EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 4 0 0 ; ; 141.48 0.00032747 35831000 32858.2 35392 29785.3 16783.2 35467 38594 47781 39090 31793.6 42435 FALSE FALSE TRUE 30555.00986 32587.40902 41318.96584 39072.13778 31018.39814 33832.66468 35825.68842 30190.06033 34549.49485 31808.99979 0.960577511 1.024471352 1.298970923 1.228335944 0.975145347 1.063619255 1.126275226 0.949104358 1.086154707 1 14.95714739 -5.77414905 24.99696003 1.036994787 1.132893553 0.172904517 0.101071471 445.0773204 875359.8903 0.033703151 0.038466882 1.68E-06 5.77414905 0.095898766 VYIGSFWSHPLLIPDNR ddPTM_HeLa_A486_30min_R1 1 VYIGSFWSHPLLIPDNR 17 0 A0A024R571;Q9H4M9;C9JDQ8;C9J2Z4;C9JC03;Q9NZN3 A0A024R571 EHD1;EHD3 EH domain-containing protein 1;EH domain-containing protein 3 0 0 138.57 1.16E-08 13654000 7688.8 9859.2 8045.8 2151.3 11857 7999.8 10664 10225 8139.8 10107 FALSE FALSE TRUE 7149.854825 9077.921085 11161.34923 5008.335121 10369.7845 7012.866012 7995.754408 7896.99071 8845.364418 7576.141414 0.943733021 1.198224873 1.473223456 0.661066742 1.368742204 0.925651414 1.055386109 1.042349961 1.167528948 1 12.88724754 -5.230544945 24.97491952 1.043929185 1.204376741 0.12794261 0.205832193 1514.255114 1224115.437 0.053276729 0.092268454 5.88E-06 5.230544945 0.160447556 VYISSPHS(ph)SPAHNK ddPTM_HeLa_A485_30min_R1 1 VYISSPHSSPAHNK 14 0 Q9BZH6 Q9BZH6 WDR11 WD repeat-containing protein 11 1 0 VYISSPHS(0.617)S(0.383)PAHNK 186.08 1.15E-17 307940000 113210 135270 114280 71375 163010 117020 154710 164210 120360 131890 TRUE FALSE FALSE 138393.1739 151088.6498 156556.9276 75274.03552 146780.152 123146.9863 121654.9446 123937.24 144515.148 99012.25026 1.397737892 1.525959156 1.581187451 0.76024972 1.482444361 1.24375505 1.228685787 1.251736424 1.459568363 1 16.59531941 -1.000000007 0.028072695 1.35E-10 3.132385798 0.157935362 0.222868095 3178.567273 6.865110294 251.5190995 575.9870068 0.099999998 1.000000007 3.132385798 VYISSPHSS(ph)PAHNK ddPTM_HeLa_A486_30min_R1 1 VYISSPHSSPAHNK 14 0 Q9BZH6 Q9BZH6 WDR11 WD repeat-containing protein 11 1 0 VYISSPHS(0.094)S(0.906)PAHNK 113.47 9.65E-05 0 186110 226310 151280 16196 214510 189230 191320 188580 170660 118890 TRUE FALSE FALSE 173064.6501 208376.3714 209859.6674 37705.1065 187604.1556 165884.7265 143449.7124 145644.4507 185452.9462 89119.17016 1.941946382 2.338176747 2.354820709 0.423086373 2.105093161 1.861380961 1.60963923 1.634266235 2.08095459 1 16.44344818 -11.30736299 0.117534408 4.78E-32 2.238485075 0.165380003 0.52882186 145.4145596 2.214359854 51.60325079 6.93082303 4.93E-12 11.30736299 2.238485075 VYLLYRPGHYDILYK ddPTM_HeLa_A485_30min_R1 2 VYLLYRPGHYDILYK 15 1 J3KR44;F5H6Q1;Q96FW1;F5H3F0;F5GYN4;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 ; ; 118.52 7.89E-05 466390000 903330 1050340 982230 915350 1317930 968460 1325440 1319330 859740 1298050 FALSE FALSE TRUE 1104272.642 1173168.126 1345597.751 965353.2527 1186712.262 1019167.068 1042248.916 995762.2489 1032281.932 974470.0238 1.133203295 1.203903761 1.38085084 0.99064438 1.217802736 1.045868055 1.06955462 1.021850056 1.059326513 1 19.89425828 -6.019061819 0.907901414 1.029848989 1.218881556 0.388052823 0.091468037 0.600998016 1.082603501 0.049647442 0.059343679 9.57E-07 6.019061819 0.189032567 VYLLYRPGHYDILYK ddPTM_HeLa_A486_30min_R1 2 VYLLYRPGHYDILYK 15 1 J3KR44;F5H6Q1;Q96FW1;F5H3F0;F5GYN4;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 ; ; 139.86 1.70E-06 355310000 961830 956450 723540 260820 1030130 896170 1120360 1065070 857540 983900 FALSE FALSE TRUE 894410.6839 880657.4187 1003714.065 607202.1411 900921.4898 785609.657 840034.078 822576.8113 931872.2577 737525.0359 1.212719081 1.194071219 1.360922025 0.823296989 1.221546993 1.065197273 1.138990593 1.115320526 1.263512711 1 19.4923325 VYNLLT(ph)PDSK ddPTM_HeLa_A485_30min_R1 1 VYNLLTPDSK 10 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 VYNLLT(1)PDSK 100.19 0.0080968 76248000 148990 147580 107370 199050 230990 168950 221060 253640 137950 256570 TRUE FALSE FALSE 182132.3115 164838.1972 147090.631 209923.5975 207991.8245 177795.9608 173828.7251 191434.3923 165635.2996 192611.8208 0.945592595 0.855805197 0.763663572 1.089879098 1.07984974 0.923079175 0.902482124 0.993887039 0.859943585 1 17.55533672 -5.255241617 24.98979765 0.976944182 0.855098937 0.337209737 0.079276541 626.2007547 2524877.46 0.022937076 0.038481423 5.56E-06 5.255241617 -0.121845245 VYNLLT(ph)PDSK ddPTM_HeLa_A486_30min_R1 2 VYNLLTPDSK 10 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 VYNLLT(1)PDSK;VYNLLT(1)PDSK ; 134.56 0.00025341 133494000 489690 462540 272200 239470 471720 492820 597090 512990 342950 633110 TRUE FALSE FALSE 455365.2598 425886.6459 377603.1298 557498.2621 412552.479 432020.879 447691.7666 396193.3755 372677.1821 474575.1351 0.959521951 0.897406152 0.795665642 1.174731293 0.86930909 0.910331889 0.943352766 0.83483804 0.785285942 1 18.85627699 -7.254829714 23.98363265 0.857546494 0.934553865 0.063159795 0.104847396 715.8262723 2597444.899 0.049872673 0.027883604 5.56E-08 7.254829714 0.077007371 VYNVTQHAVGIVVNK ddPTM_HeLa_A485_30min_R1 2 VYNVTQHAVGIVVNK 15 0 M0R181;P46778;G3V1B3 M0R181 RPL21 60S ribosomal protein L21 0 0 ; ; 222.16 8.09E-23 133008000 216180 266300 238270 219220 339680 292850 329370 391300 254910 343210 FALSE FALSE TRUE 264268.4952 297441.4685 326415.9882 231195.4335 305860.2665 308183.1732 258997.4088 295333.0615 306068.0988 257654.0633 1.025671755 1.154421804 1.266876928 0.89730948 1.187096615 1.196112218 1.005213756 1.146238711 1.187903249 1 17.97507582 -10.24736546 3.985136227 0.999884604 1.119229502 0.103078137 0.10488178 69939177.47 15.83669636 76629.80576 0.024666296 5.66E-11 10.24736546 0.119344898 VYNVTQHAVGIVVNK ddPTM_HeLa_A486_30min_R1 2 VYNVTQHAVGIVVNK 15 0 M0R181;P46778;G3V1B3 M0R181 RPL21 60S ribosomal protein L21 0 0 ; ; 176.4 3.88E-11 114125000 188511 188254 147619 60472 223680 179117 217790 212050 162894 217820 FALSE FALSE TRUE 175297.3524 173336.0674 204781.0302 140781.8721 195623.9687 157019.3657 163296.6385 163770.844 177013.7831 163276.4542 1.073622974 1.061610924 1.25419817 0.862230092 1.198114998 0.961677949 1.00012362 1.003027931 1.084135394 1 17.31695723 -5.252064269 24.99927737 1.0204531 1.122990692 0.233976627 0.094161322 1066.777869 2844619.745 0.024417536 0.041520721 5.60E-06 5.252064269 0.102537592 VYS(ph)PYNHR ddPTM_HeLa_A485_30min_R1 4 VYSPYNHR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 VYS(1)PYNHR;VYS(1)PYNHR;VYS(0.999)PY(0.001)NHR;VYS(1)PYNHR ;;; 123.79 0.00033097 673780000 1674400 1989360 1701570 1968500 2360330 1708900 2417280 2618240 1868080 2697400 TRUE FALSE FALSE 2046864.503 2221998.347 2331051.551 2076034.17 2125327.258 1798375.362 1900808.381 1976112.535 2242986.521 2024987.822 1.010803364 1.097289733 1.151143491 1.025208225 1.049550637 0.888091939 0.93867645 0.975863911 1.107654326 1 20.9494818 -5.813357584 2.389408333 0.978842197 1.083915078 0.292654072 0.064054741 0.346698241 4.052847368 0.022266253 0.027380661 1.54E-06 5.813357584 0.105072881 VYS(ph)PYNHR ddPTM_HeLa_A486_30min_R1 3 VYSPYNHR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 VYS(1)PYNHR;VYS(1)PYNHR;VYS(0.992)PY(0.008)NHR ;; 109.83 0.0012353 1153450000 1907110 2051520 1659890 642080 2218270 2054100 2095210 2097810 1778210 2117600 TRUE FALSE FALSE 1773431.437 1888950.084 2302643.861 1494794.689 1940033.892 1800686.027 1570966.297 1620184.458 1932346.675 1587339.177 1.117235348 1.190010372 1.45063128 0.941698353 1.222192409 1.134405332 0.98968533 1.020692037 1.217349576 1 20.598179 -5.275863596 24.9892935 1.081043519 1.246364163 0.318294075 0.118700748 984.1764091 1705038.619 0.033377748 0.049748082 5.30E-06 5.275863596 0.165320644 VYS(ph)SSEFLAVQPTPTFAER ddPTM_HeLa_A486_30min_R1 1 VYSSSEFLAVQPTPTFAER 19 0 O60307;V9GYV0 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 VY(0.024)S(0.469)S(0.469)S(0.037)EFLAVQPTPTFAER 71.607 0.0013729 0 20163 22587 17802 10793 28847 25444 25709 23456 20868 22721 TRUE FALSE FALSE 18749.67782 20797.12386 24695.41115 25126.64945 25228.74027 22304.97798 19276.33628 18115.58084 22676.85504 17031.51371 1.100881468 1.221096622 1.449983341 1.475303363 1.481297593 1.309629805 1.131804055 1.063650662 1.33146445 1 14.05591904 -6.700520288 4.585644933 1.136263937 1.355146597 0.360375588 0.135792937 0.248757763 10.42769299 0.058210513 0.04337796 1.99E-07 6.700520288 0.21888266 VYSLIQSLTSQIR ddPTM_HeLa_A485_30min_R1 1 VYSLIQSLTSQIR 13 0 A0A087WZV0;O43314;O43314-2 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 0 0 128.28 0.00056083 9122500 2767.1 2187.8 3202.9 3028.7 3164.9 1849.1 2934.4 2284.3 2208.6 4602.7 FALSE FALSE TRUE 3382.631849 2443.644179 4387.785994 3194.150212 2849.791443 1945.916017 2307.441468 1724.071843 2651.845762 3455.331596 0.978960124 0.707209745 1.269859599 0.924412064 0.824751942 0.563163321 0.667791615 0.498959881 0.767464913 1 11.75460845 -5.947574371 3.109022612 0.666938093 0.972898723 0.326493731 0.179547062 0.26602004 5.257299794 0.058291229 0.065408493 1.13E-06 5.947574371 0.305960629 VYSLIQSLTSQIR ddPTM_HeLa_A486_30min_R1 2 VYSLIQSLTSQIR 13 0 A0A087WZV0;O43314;O43314-2 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 0 0 ; ; 248.42 1.04E-30 12620100 8456.7 8951 10029 3193.07 9728.2 9245.5 9818.1 8344.9 10541.8 9895.3 FALSE FALSE TRUE 7863.929 8241.690161 13912.49739 7433.628329 8507.998444 8104.884211 7361.507535 6444.948438 11455.57171 7417.452472 1.060192705 1.111121398 1.875643617 1.002180783 1.147024329 1.092677606 0.992457661 0.868889752 1.544407835 1 12.85670806 VYSS(ph)SEFLAVQPTPTFAER ddPTM_HeLa_A485_30min_R1 1 VYSSSEFLAVQPTPTFAER 19 0 O60307;V9GYV0 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 VYS(0.034)S(0.966)SEFLAVQPTPTFAER 205.98 1.08E-25 43735000 28052 26685 37154 26271 47328 31374 48419 41521 33817 32045 TRUE FALSE FALSE 34292.07062 29805.57862 50898.81071 27706.11821 42615.85814 33016.69413 38073.8851 31337.90965 40603.76171 24056.77124 1.425464385 1.238968369 2.115778971 1.151697288 1.771470398 1.372449103 1.582668128 1.302664823 1.687830894 1 14.55415541 -10.78937874 2.581558415 0.85305055 1.5141963 0.244274867 0.272542875 20238801.13 14587898.23 18724101.7 0.063275337 1.62E-11 10.78937874 0.661145751 VYT(ph)HEVVTLWYR ddPTM_HeLa_A485_30min_R1 6 VYTHEVVTLWYR 12 0 E5RIU6;A0A087WZZ9;P06493 E5RIU6 CDK1 Cyclin-dependent kinase 1 1 0 VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR ;;;;; 220.97 6.89E-23 2532807000 1540130 1364408 1190447 1632430 2196800 1066709 1899500 1780530 1156800 2026650 TRUE FALSE FALSE 1882726.605 1523963.647 1630842.884 1721605.517 1978078.879 1122560.234 1493656.308 1343852.226 1388959.149 1521443.453 1.237460782 1.001656449 1.071905026 1.131560634 1.300133025 0.737825801 0.981736327 0.883274514 0.912921967 1 20.53700928 -6.261737179 24.999996 0.90076792 1.135181656 0.592456138 0.101450878 20.45573268 1717175.871 0.034352846 0.032205656 5.47E-07 6.261737179 0.234413736 VYT(ph)HEVVTLWYR ddPTM_HeLa_A486_30min_R1 5 VYTHEVVTLWYR 12 0 E5RIU6;A0A087WZZ9;P06493 E5RIU6 CDK1 Cyclin-dependent kinase 1 1 0 VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR;VYT(1)HEVVTLWYR;VYT(0.999)HEVVT(0.001)LWYR;VYT(1)HEVVTLWYR ;;;; 205.31 6.06E-17 1354108000 808877 906537 703469 625523 1001603 932167 1323719 1252123 647044 1041525 TRUE FALSE FALSE 752178.8993 834699.7066 975871.0364 1456249.156 875972.6122 817165.7131 992510.5053 967041.9266 703130.2949 780720.3608 0.963442145 1.069140436 1.249962324 1.865263453 1.122005594 1.046681698 1.271275293 1.238653396 0.90061734 1 19.57444637 -7.755500505 24.64351512 0.950308627 1.236786764 0.181927272 0.235249909 192.4961213 798798.4993 0.179768929 0.063886725 1.76E-08 7.755500505 0.286478137 VYTY(ph)IQSR ddPTM_HeLa_A486_30min_R1 1 VYTYIQSR 8 0 Q92630;A0A0A0MTH5;Q9NR20-5;Q9NR20-2;Q9NR20;Q92630-2;Q9NR20-3;Q9NR20-4 Q92630 DYRK2;DYRK4 Dual specificity tyrosine-phosphorylation-regulated kinase 2;Dual specificity tyrosine-phosphorylation-regulated kinase 4 1 0 VY(0.001)T(0.086)Y(0.914)IQSR 139.97 5.38E-05 0 112770 115280 98617 39294 133780 106080 127460 110650 95685 122600 TRUE FALSE FALSE 104865.4053 106144.793 136804.1435 91478.41781 117000.065 92992.92814 95568.15987 85457.41047 103979.0528 91900.16201 1.141079657 1.155001152 1.488617 0.995410844 1.273121422 1.011890797 1.039912855 0.929894013 1.131434924 1 16.48777978 -6.271817518 24.53533251 1.019325274 1.211039956 0.360243474 0.125240946 615.361607 1454794.173 0.042764461 0.038149841 5.35E-07 6.271817518 0.191714682 VYYS(ph)PPVAR ddPTM_HeLa_A485_30min_R1 4 VYYSPPVAR 9 0 O94964-2;H0YDM2;O94964;O94964-3 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 VYYS(1)PPVAR;VYYS(1)PPVAR;VYYS(1)PPVAR;VYYS(1)PPVAR ;;; 128.52 0.0002622 3678480000 1410890 2009570 2129930 1546200 2297060 1947430 2236830 2543740 1858530 2032720 TRUE FALSE FALSE 1724737.613 2244571.731 2917879.741 1630664.991 2068356.641 2049394.424 1758912.997 1919883.777 2231519.924 1526000.313 1.130234115 1.470885498 1.912109529 1.068587586 1.355410364 1.342984274 1.152629512 1.258114929 1.462332546 1 20.54132383 -5.315338081 24.99988469 1.251221598 1.501062554 0.240487368 0.218509384 469.9228772 217963.6661 0.061320097 0.090952417 4.84E-06 5.315338081 0.249840957 VYYS(ph)PPVAR ddPTM_HeLa_A486_30min_R1 4 VYYSPPVAR 9 0 O94964-2;H0YDM2;O94964;O94964-3 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 VYYS(1)PPVAR;VYYS(1)PPVAR;VYYS(1)PPVAR;VYYS(1)PPVAR ;;; 130.79 0.00023769 3066220000 2226890 2510800 2213670 740911 2799270 2158400 2390950 2467420 2039060 2279220 TRUE FALSE FALSE 2070796.511 2311835.064 3070862.308 1724878.252 2448159.454 1892118.553 1792709.021 1905642.329 2215807.363 1708488.477 1.212063493 1.353146419 1.797414703 1.009593143 1.432938816 1.107481015 1.049295354 1.115396653 1.296940186 1 20.70428909 -5.900846916 1.320244015 1.120580923 1.408876206 0.255831814 0.201358153 0.602328171 2.194854829 0.08278002 0.102562572 1.26E-06 5.900846916 0.288295283 VYYTAGYNS(ph)PVK ddPTM_HeLa_A485_30min_R1 2 VYYTAGYNSPVK 12 0 Q9Y5Z4-2;Q9Y5Z4 Q9Y5Z4-2 HEBP2 Heme-binding protein 2 1 0 VYYTAGYNS(1)PVK;VYYTAGYNS(1)PVK ; 176.32 3.84E-11 394730000 267100 281820 275400 356650 394600 288690 413440 387030 282300 461130 TRUE FALSE FALSE 326515.4735 314776.3975 377281.9204 376132.8864 355312.2385 303805.362 325105.1665 292110.2857 338955.0206 346178.7775 0.943198991 0.909288547 1.089847053 1.08652786 1.026383654 0.877596727 0.939125064 0.843813384 0.979132872 1 18.40115776 -6.250382016 24.61271166 0.918871411 1.01396677 0.271593954 0.067159161 774.3086745 1723542.939 0.023503132 0.023288678 5.62E-07 6.250382016 0.095095359 VYYTAGYNS(ph)PVK ddPTM_HeLa_A486_30min_R1 1 VYYTAGYNSPVK 12 0 Q9Y5Z4-2;Q9Y5Z4 Q9Y5Z4-2 HEBP2 Heme-binding protein 2 1 0 VYYTAGYNS(1)PVK 206.49 2.91E-17 160620000 257550 290120 171840 111450 296170 311410 313630 371380 208480 367110 TRUE FALSE FALSE 239497.075 267129.8346 238381.05 259461.2324 259021.5969 272991.4004 235156.4568 286824.8812 226551.2143 275183.2665 0.870318454 0.970734296 0.866262884 0.942867042 0.941269432 0.992034886 0.854544899 1.042304951 0.823273948 1 18.07003322 WAAHGAS(ph)PEDFSLTLGAR ddPTM_HeLa_A485_30min_R1 4 WAAHGASPEDFSLTLGAR 18 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 WAAHGAS(1)PEDFSLTLGAR;WAAHGAS(1)PEDFSLTLGAR;WAAHGAS(1)PEDFSLTLGAR;WAAHGAS(1)PEDFSLTLGAR ;;; 198.49 2.91E-25 698790000 264409 333530 322896 242982 403583 323043 366752 382404 300011 324848 TRUE FALSE FALSE 323225.8698 372533.4322 442348.6672 256255.4914 363400.8595 339957.032 288392.4391 288618.8194 360220.4558 243869.372 1.325405758 1.527594175 1.813875452 1.050789975 1.49014555 1.394012824 1.182569327 1.183497612 1.477104127 1 17.89574905 -11.91033533 0.074494057 1.21E-06 1.887698406 0.283961558 0.198906717 220.4129692 1.810010842 46.60553853 10.32161757 1.23E-12 11.91033533 1.887697193 WAAHGAS(ph)PEDFSLTLGAR ddPTM_HeLa_A486_30min_R1 3 WAAHGASPEDFSLTLGAR 18 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 WAAHGAS(1)PEDFSLTLGAR;WAAHGAS(1)PEDFSLTLGAR;WAAHGAS(1)PEDFSLTLGAR ;; 275.23 3.41E-69 487520000 289311 321391 295170 115740 411010 285584 329618 359830 289356 307139 TRUE FALSE FALSE 269031.7929 295922.8067 409467.7289 269448.5692 359457.2933 250351.5497 247144.0901 277904.564 314437.6111 230229.3953 1.168537982 1.285338939 1.778520629 1.170348247 1.561300601 1.087400457 1.073468876 1.20707681 1.365757881 1 17.81271252 -6.276459906 24.89004836 1.155103602 1.395908173 0.289279645 0.19259505 1064.197276 1763443.011 0.067483693 0.059753851 5.29E-07 6.276459906 0.240804571 WADPQISESNFS(ph)PK ddPTM_HeLa_A485_30min_R1 1 WADPQISESNFSPK 14 0 D6RAW2;Q9BW91-2;Q9BW91 D6RAW2 NUDT9 "ADP-ribose pyrophosphatase, mitochondrial" 1 0 WADPQISESNFS(1)PK 155.1 5.00E-07 0 75050 53722 49622 109860 86595 76470 96153 108440 58588 145580 TRUE FALSE FALSE 91744.61358 60004.32058 67979.24274 115861.3736 77973.29775 80473.85095 75609.12605 81844.91997 70346.0742 109289.5852 0.839463462 0.549039696 0.622010255 1.060131882 0.713455885 0.736335954 0.691823708 0.748881239 0.643666769 1 16.7377964 -11.34228582 2.310221858 2.646773354 0.733414857 0.267185492 0.132221843 9967498.088 948925.5057 86285823.57 0.034727818 4.55E-12 11.34228582 -1.913358497 WADPQISESNFS(ph)PK ddPTM_HeLa_A486_30min_R1 1 WADPQISESNFSPK 14 0 D6RAW2;Q9BW91-2;Q9BW91 D6RAW2 NUDT9 "ADP-ribose pyrophosphatase, mitochondrial" 1 0 WADPQISESNFS(1)PK 175.26 1.49E-12 95246000 108550 105270 50995 61570 102930 120730 152900 157630 69292 187650 TRUE FALSE FALSE 100941.2056 96928.02181 70741.62969 143338.0716 90019.55962 105835.5601 114642.8028 121741.09 75298.28635 140661.2186 0.717619302 0.689088455 0.502922059 1.019030498 0.639974262 0.75241464 0.815027795 0.865491507 0.535316608 1 17.1018651 -11.46034768 2.326021773 4.152802714 0.732194258 0.24283837 0.144642689 5462826.699 675824.3388 91570884.34 0.035769075 3.46E-12 11.46034768 -3.420608457 WAHDKFS(ph)GEEGEIEDDES(ph)GTENR ddPTM_HeLa_A485_30min_R1 7 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(1)GEEGEIEDDES(0.868)GT(0.132)ENR;WAHDKFS(1)GEEGEIEDDES(0.966)GT(0.034)ENR;WAHDKFS(1)GEEGEIEDDES(0.993)GT(0.007)ENR;WAHDKFS(1)GEEGEIEDDES(0.997)GT(0.003)ENR;WAHDKFS(1)GEEGEIEDDES(0.98)GT(0.02)ENR;WAHDKFS(1)GEEGEIEDDES(0.978)GT(0.022)ENR;WAHDKFS(1)GEEGEIEDDES(0.977)GT(0.023)ENR ;;;;;; 287.02 4.07E-75 14234400000 9380320 9553030 5546010 10457160 6796550 8575910 11418850 9726880 6168410 11770870 TRUE FALSE FALSE 11466939.82 10670173.76 7597709.888 11028408.17 6119861.618 9024931.387 8979119.414 7341347.429 7406353.307 8836608.736 1.297662957 1.207496459 0.859799287 1.248036266 0.692557722 1.021311643 1.016127304 0.830787879 0.838144307 1 23.07506138 -3.501172219 0.623959114 0.910907459 2.149021603 0.411389408 0.146150323 7.571287483 1.116620352 0.063735878 8.294238404 0.000315375 3.501172219 1.238114144 WAHDKFS(ph)GEEGEIEDDES(ph)GTENR ddPTM_HeLa_A486_30min_R1 8 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(1)GEEGEIEDDES(0.972)GT(0.028)ENR;WAHDKFS(1)GEEGEIEDDES(0.776)GT(0.225)ENR;WAHDKFS(1)GEEGEIEDDES(0.973)GT(0.027)ENR;WAHDKFS(1)GEEGEIEDDES(0.902)GT(0.098)ENR;WAHDKFS(1)GEEGEIEDDES(0.997)GT(0.003)ENR;WAHDKFS(1)GEEGEIEDDES(0.916)GT(0.084)ENR;WAHDKFS(1)GEEGEIEDDES(0.992)GT(0.008)ENR;WAHDKFS(1)GEEGEIEDDES(0.888)GT(0.112)ENR ;;;;;;; 291.68 1.45E-88 12822400000 7926640 7094910 3172329 2698935 4173433 6997280 7535540 6539530 5489310 11415770 TRUE FALSE FALSE 7371023.469 6532683.492 4400739.747 6283257.077 3649962.117 6134026.737 5650068.189 5050621.776 5965127.811 8557186.888 0.861383953 0.763414844 0.514274119 0.734266665 0.426537619 0.716827483 0.660271683 0.590219875 0.697089813 1 23.02870517 -8.04140415 20.27700777 1.000000003 0.653265305 0.423702274 0.118657268 598.7605846 293234.4039 0.113783953 0.029378881 9.09E-09 8.04140415 -0.346734698 WAHDKFS(ph)GEEGEIEDDES(ph)GTENREEK ddPTM_HeLa_A485_30min_R1 2 WAHDKFSGEEGEIEDDESGTENREEK 26 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(1)GEEGEIEDDES(0.999)GT(0.001)ENREEK;WAHDKFS(1)GEEGEIEDDES(0.998)GT(0.002)ENREEK ; 211.48 5.41E-29 760810000 373240 267660 176320 681180 338260 332300 579110 437710 273700 845710 TRUE FALSE FALSE 456265.9503 298960.5087 241548.1053 718391.1386 304581.6467 349698.7142 455378.4176 330360.9362 328629.0795 634890.0611 0.718653478 0.470885476 0.380456586 1.13152053 0.479739195 0.550801998 0.717255546 0.520343531 0.517615725 1 19.27614727 -10.15220636 4.649374568 1.000044403 0.609200561 0.253194512 0.201092723 9.19E-05 1.68E-05 0.192018304 0.046565965 7.04E-11 10.15220636 -0.390843843 WAHDKFS(ph)GEEGEIEDDES(ph)GTENREEK ddPTM_HeLa_A486_30min_R1 2 WAHDKFSGEEGEIEDDESGTENREEK 26 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(1)GEEGEIEDDES(0.988)GT(0.012)ENREEK;WAHDKFS(1)GEEGEIEDDES(1)GTENREEK ; 283.02 3.12E-76 995950000 597900 517834 190640 401673 409436 783920 966050 801700 429220 1150940 TRUE FALSE FALSE 555990.2976 476798.9479 264460.9135 935115.0434 358080.719 687207.9207 724334.0722 619170.411 466425.1352 862737.1326 0.644449249 0.552658428 0.306537071 1.083893353 0.415051938 0.796543808 0.83957679 0.717681421 0.540634125 1 19.71856153 -13.99999998 0.081613752 2.01892603 0.353829584 0.198911142 0.21021531 404.7831368 2.327828161 75.45564829 6.71112382 1.00E-14 13.99999998 -1.665096446 WAHDKFS(ph)GEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_A485_30min_R1 4 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(1)GEEGEIEDDES(0.564)GT(0.436)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.851)GT(0.149)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.948)GT(0.052)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.976)GT(0.024)ENREEKDNIQPTTE ;;; 240.48 4.75E-51 10767120000 886499 539572 478574 1790690 1362170 1111960 2131970 1970850 829231 2534800 TRUE FALSE FALSE 1083697.644 602670.2517 655618.4377 1888510.86 1226547.572 1170180.506 1676457.193 1487495.947 995650.0555 1902921.01 0.56949166 0.316707971 0.34453266 0.992427353 0.644560424 0.614939086 0.880991478 0.781690853 0.523221957 1 20.85978425 -5.242668231 24.86838688 0.75981981 0.400890442 0.522421856 0.159967721 614.4445894 814027.0169 0.042269348 0.073054296 5.72E-06 5.242668231 -0.358929368 WAHDKFS(ph)GEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_A486_30min_R1 3 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(1)GEEGEIEDDES(0.984)GT(0.016)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.977)GT(0.023)ENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDES(0.963)GT(0.037)ENREEKDNIQPTTE ;; 211.94 5.28E-30 9421210000 549914 589783 271460 490894 630062 825890 1263660 1154600 500826 1271390 TRUE FALSE FALSE 511367.8684 543046.4471 376576.582 1142826.04 551033.7489 724000.0888 947478.9024 891722.7847 544238.0009 953025.6686 0.536573028 0.569813033 0.395137922 1.199155572 0.578194027 0.759685822 0.994179835 0.935675516 0.571063318 1 19.86215555 -5.231621063 24.99211711 0.849233303 0.507438467 0.439096712 0.187047717 682.0322497 571642.1812 0.049403128 0.085554172 5.87E-06 5.231621063 -0.341794836 WAHDKFS(ph)GEEGEIEDDESGTENR ddPTM_HeLa_A485_30min_R1 8 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR ;;;;;;; 350.8 9.94E-142 12296750000 4227410 4205070 2965730 5596550 3763390 4121720 5527890 5042700 3332860 6570920 TRUE FALSE FALSE 5167782.77 4696816.357 4062876.941 5902275.355 3388693.678 4337526.886 4346811.143 3805969.918 4001734.431 4932910.573 1.047613309 0.952138963 0.823626717 1.196509701 0.686956236 0.879303774 0.88118588 0.771546506 0.811231903 1 22.2340077 -5.776485846 24.99989775 0.831135499 0.988245202 0.328272475 0.115488887 290.5638619 482773.7839 0.034496675 0.039267322 1.67E-06 5.776485846 0.157109704 WAHDKFS(ph)GEEGEIEDDESGTENR ddPTM_HeLa_A486_30min_R1 9 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR ;;;;;;;; 321.3 1.49E-105 14836940000 3835988 3444335 1582566 1275784 2398918 3453930 3765001 3297747 2711876 5247120 TRUE FALSE FALSE 3567105.05 3171393.351 2195377.938 2970089.627 2098023.335 3027819.234 2822957.928 2546921.997 2946943.595 3933206.999 0.906920244 0.806312343 0.558164861 0.755131786 0.533412896 0.769809276 0.717724221 0.64754334 0.749247013 1 21.90727468 -8.03662251 21.10476406 1.000000002 0.706950061 0.396558029 0.105844755 731.6257443 421621.1684 0.102324018 0.026419948 9.19E-09 8.03662251 -0.293049941 WAHDKFS(ph)GEEGEIEDDESGTENREEK ddPTM_HeLa_A485_30min_R1 2 WAHDKFSGEEGEIEDDESGTENREEK 26 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENREEK;WAHDKFS(1)GEEGEIEDDESGTENREEK ; 187.29 1.18E-20 756150000 177363 153063 114149 307023 229319 186976 286485 299610 168037 414500 TRUE FALSE FALSE 216816.7875 170962.3864 156377.4652 323794.8891 206487.1952 196765.7742 225275.1394 226130.1777 201760.4846 311172.7783 0.696772991 0.549413054 0.502542241 1.04056303 0.66357731 0.632336078 0.723955163 0.726702956 0.648387323 1 18.24735633 -13.99999995 0.287407386 3.37233492 0.669812758 0.318532617 0.13667634 309.7434592 2.937945047 440.1937629 0.154559818 1.00E-14 13.99999995 -2.702522162 WAHDKFS(ph)GEEGEIEDDESGTENREEK ddPTM_HeLa_A486_30min_R1 1 WAHDKFSGEEGEIEDDESGTENREEK 26 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENREEK 191.99 6.06E-21 319640000 120520 118210 59786 93174 115050 166310 211340 184010 99009 228430 TRUE FALSE FALSE 112072.1704 108842.6091 82936.74032 216913.7808 100619.3562 145792.3631 158460.4967 142114.9399 107591.1798 171229.6412 0.654513842 0.635652848 0.484359716 1.266800417 0.587628144 0.851443489 0.925426787 0.829966932 0.628344363 1 17.38557294 WAHDKFS(ph)GEEGEIEDDESGTENREEKDNIQPTTE ddPTM_HeLa_A485_30min_R1 3 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE ;; 242.92 3.73E-50 4109570000 312046 224546 187070.1 588943 574590 441292 910724 852175 311388 960275 TRUE FALSE FALSE 381459.5562 250804.7014 256275.1146 621115.4648 517381.8021 464397.3668 716140.3775 643177.7451 373880.7154 720896.1151 0.529146361 0.347906857 0.355495208 0.861588032 0.717692593 0.644194575 0.99340302 0.892191998 0.518633278 1 19.45943185 -5.260072721 24.97834059 0.797108034 0.404555195 0.594254121 0.14875212 82.80302745 1513372.88 0.04082883 0.066045767 5.49E-06 5.260072721 -0.392552839 WAHDKFS(ph)GEEGEIEDDESGTENREEKDNIQPTTE ddPTM_HeLa_A486_30min_R1 4 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE;WAHDKFS(1)GEEGEIEDDESGTENREEKDNIQPTTE ;;; 280.8 2.21E-77 3316440000 1206557 1099341 583547 1174067 1487554 1780164 2803950 2829470 1007137 2525700 TRUE FALSE FALSE 1121983.585 1012225.215 809512.0263 2733287.31 1300971.106 1560545.465 2102372.053 2185261.448 1094436.446 1893248.28 0.592623586 0.534650012 0.427578377 1.443702518 0.687163496 0.824268788 1.110457659 1.154239236 0.578073387 1 20.85243219 -5.215641992 24.9998147 0.965410614 0.519920388 0.439880372 0.234106209 402.7135735 219832.102 0.061874285 0.107168932 6.09E-06 5.215641992 -0.445490226 WAHDKFSGEEGEIEDDES(ph)GTENR ddPTM_HeLa_A485_30min_R1 9 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(1)GTENR;WAHDKFSGEEGEIEDDES(0.942)GT(0.058)ENR;WAHDKFSGEEGEIEDDES(1)GTENR;WAHDKFSGEEGEIEDDES(1)GTENR;WAHDKFSGEEGEIEDDES(0.999)GT(0.001)ENR;WAHDKFSGEEGEIEDDES(1)GTENR;WAHDKFSGEEGEIEDDES(0.854)GT(0.146)ENR;WAHDKFSGEEGEIEDDES(0.5)GT(0.5)ENR;WAHDKFSGEEGEIEDDES(0.933)GT(0.067)ENR ;;;;;;;; 351.17 9.65E-142 5213490000 3265643 4358371 2312979 2518926 2811464 3879871 4358216 4787923 2473563 3237539 TRUE FALSE FALSE 3992074.019 4868044.576 3168646.183 2656528.549 2531544.773 4083015.046 3427047.548 3613677.377 2969984.405 2430480.11 1.642504295 2.002914797 1.30371204 1.093005673 1.041582181 1.679921193 1.410029045 1.486816272 1.221974372 1 21.2128099 -4.774268838 24.80775046 1.30080264 1.822709496 0.503234692 0.215009241 153.2345428 296304.2622 0.058062449 0.122137844 1.68E-05 4.774268838 0.521906855 WAHDKFSGEEGEIEDDES(ph)GTENR ddPTM_HeLa_A486_30min_R1 7 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.93)GT(0.07)ENR;WAHDKFSGEEGEIEDDES(1)GTENR;WAHDKFSGEEGEIEDDES(1)GTENR;WAHDKFSGEEGEIEDDES(0.855)GT(0.145)ENR;WAHDKFSGEEGEIEDDES(0.974)GT(0.026)ENR;WAHDKFSGEEGEIEDDES(0.943)GT(0.057)ENR;WAHDKFSGEEGEIEDDES(0.995)GT(0.005)ENR ;;;;;; 337.29 5.58E-123 4367410000 4146790 3483730 1783529 929371 2680820 2991930 3345280 3155140 2478250 4306060 TRUE FALSE FALSE 3856121.435 3207666.547 2474159.193 2163622.656 2344566.558 2622816.096 2508255.561 2436783.498 2693066.705 3227794.548 1.194661363 0.993764163 0.766516938 0.670309905 0.726367965 0.812572194 0.777080302 0.754937609 0.834336469 1 21.62211732 -4.522964681 2.643936066 0.777060601 1.193053933 0.697326685 0.08387141 0.155891894 1.954073104 0.021491046 0.109755806 3.00E-05 4.522964681 0.415993332 WAHDKFSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_A485_30min_R1 4 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.978)GT(0.022)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.968)GT(0.032)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.996)GT(0.004)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.85)GT(0.15)ENREEKDNIQPTTE ;;; 242.92 3.73E-50 3228150000 984401 821542 678734 1421330 1696340 1586380 2866010 3317620 1090170 2282240 TRUE FALSE FALSE 1203377.606 917614.1904 929825.9511 1498973.659 1527446.433 1669440.404 2253663.55 2503968.493 1308957.119 1713319.57 0.702366113 0.535576787 0.542704331 0.874894378 0.891512862 0.974389386 1.315378398 1.461471951 0.763988892 1 20.70836284 -5.829119371 1.216209236 1.156772719 0.586922341 0.561509234 0.189813243 0.318090671 0.993784533 0.080627478 0.109209001 1.48E-06 5.829119371 -0.569850379 WAHDKFSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_A486_30min_R1 7 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.945)GT(0.055)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.966)GT(0.034)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.998)GT(0.002)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.952)GT(0.048)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.966)GT(0.034)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.83)GT(0.17)ENREEKDNIQPTTE;WAHDKFSGEEGEIEDDES(0.962)GT(0.038)ENREEKDNIQPTTE ;;;;;; 238.84 8.91E-51 10495740000 3580960 3023000 1723462 2191480 4583460 4382340 7115330 6841140 2478810 5482400 TRUE FALSE FALSE 3329953.196 2783446.47 2390832.642 5101876.191 4008559.708 3841691.447 5334999.176 5283561.763 2693675.247 4109571.356 0.810292098 0.677308223 0.58177178 1.241461882 0.975420393 0.934815608 1.298188719 1.285672229 0.655463797 1 21.97055649 -5.255429856 24.99517604 1.069465203 0.68854244 0.438841682 0.189258955 444.8223131 1850126.97 0.051737623 0.086729246 5.55E-06 5.255429856 -0.380922763 WAHDKFSGEEGEIEDDESGT(ph)ENR ddPTM_HeLa_A486_30min_R1 1 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.459)GT(0.541)ENR 78.286 0.00624 252510000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 WAHDKFSGEEGEIEDDESGT(ph)ENREEKDNIQPTTE ddPTM_HeLa_A485_30min_R1 1 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.485)GT(0.512)ENREEKDNIQPT(0.001)T(0.001)E 100.97 4.87E-05 2565400000 492280 401560 335100 787430 923470 788270 1426400 1802600 519280 1164200 TRUE FALSE FALSE 601785.9877 448518.9489 459067.4347 830445.307 831526.0843 829542.5983 1121637.987 1360509.524 623494.7329 873986.3655 0.688553061 0.513187581 0.525256975 0.950181078 0.951417685 0.949148214 1.283358679 1.556671336 0.71339183 1 19.73725125 -5.623874531 1.202792228 1.15127424 0.553308416 0.499123412 0.219694803 0.370089837 1.113440263 0.087002824 0.147531802 2.38E-06 5.623874531 -0.597965824 WALHILAR ddPTM_HeLa_A485_30min_R1 1 WALHILAR 8 0 O95373 O95373 IPO7 Importin-7 0 0 132.09 0.0077779 0 33578 36258 35553 38915 44612 26581 38638 34392 23985 49247 FALSE FALSE TRUE 41047.31026 40498.0577 48705.53418 41040.82791 40170.27264 27972.74006 30382.67566 25957.30808 28798.5695 36970.62922 1.1102681 1.095411643 1.317411556 1.110092762 1.086545549 0.756620611 0.821805749 0.702106202 0.778958057 1 15.17409198 -6.157736253 3.440322822 0.792788723 1.160383036 0.756368679 0.094343635 0.115229276 2.55312264 0.032229131 0.032087329 6.95E-07 6.157736253 0.367594313 WALHILAR ddPTM_HeLa_A486_30min_R1 1 WALHILAR 8 0 O95373 O95373 IPO7 Importin-7 0 0 132.29 0.0076801 0 42444 39718 33220 18317 41026 38163 43760 40837 34549 47494 FALSE FALSE TRUE 39468.89478 36570.60103 46083.67366 42642.90169 35880.13653 33454.83707 32810.78515 31539.30657 37543.73514 35601.19327 1.10863966 1.027229642 1.294441827 1.197794169 1.007835222 0.939711117 0.921620377 0.885905883 1.054563954 1 15.11963798 -5.894898011 4.457487386 0.952873896 1.156806368 0.597796912 0.076376376 0.153661808 5.333675864 0.025469717 0.029157924 1.27E-06 5.894898011 0.203932472 WALWFFK ddPTM_HeLa_A485_30min_R1 2 WALWFFK 7 0 H0Y8J7;D6RBW1;P06730;P06730-3;P06730-2;D6RHE2;H0Y8X3;A6NMX2 H0Y8J7 EIF4E;EIF4E1B Eukaryotic translation initiation factor 4E;Eukaryotic translation initiation factor 4E type 1B 0 0 ; ; 143.22 0.0035888 121351000 334090 374350 342190 319580 508780 416150 669890 629420 208390 445120 FALSE FALSE TRUE 408407.1679 418126.9761 468780.3207 337037.8462 458124.0768 437938.9705 526762.529 475053.7581 250211.9615 334159.7758 1.222191291 1.251278599 1.402862806 1.008612857 1.370973139 1.310567585 1.576379227 1.421636572 0.748779415 1 18.35017856 -7.75953344 24.99999995 0.874389613 1.320472701 0.582363056 0.151135219 34.27655037 449652.8395 0.118548433 0.039626654 1.74E-08 7.75953344 0.446083088 WALWFFK ddPTM_HeLa_A486_30min_R1 2 WALWFFK 7 0 H0Y8J7;D6RBW1;P06730;P06730-3;P06730-2;D6RHE2;H0Y8X3;A6NMX2 H0Y8J7 EIF4E;EIF4E1B Eukaryotic translation initiation factor 4E;Eukaryotic translation initiation factor 4E type 1B 0 0 ; ; 142.42 0.0036498 130391000 227710 377460 300630 175520 424330 420430 539410 478620 358740 451660 FALSE FALSE TRUE 211748.7049 347548.6949 417041.9872 408619.4303 371106.5747 368561.6212 404443.9127 369648.6742 389835.872 338561.3962 0.625436648 1.026545551 1.231806083 1.206928595 1.096127848 1.088610885 1.194595477 1.091821685 1.151448087 1 18.36905796 -4.296197151 3.173460605 1.137855722 0.569503023 0.841214262 0.06583968 0.106932369 1.735506086 0.01642123 0.143810645 5.06E-05 4.296197151 -0.568352699 WAPHS(ph)PTAS(ph)QPQS(ph)PGDPTSLEEHGGEEPPEEQPHR ddPTM_HeLa_A485_30min_R1 1 WAPHSPTASQPQSPGDPTSLEEHGGEEPPEEQPHR 35 0 Q9Y4B5-4 Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 3 0 WAPHS(0.97)PT(0.425)AS(0.604)QPQS(1)PGDPTSLEEHGGEEPPEEQPHR 174.92 3.86E-15 600680000 31143 38542 39319 24701 49525 34244 37758 43946 41177 36106 TRUE FALSE FALSE 38070.65291 43049.15163 53864.7343 26050.35308 44594.11711 36036.96289 29690.69485 33168.1746 49440.8462 27105.43868 1.404539264 1.588210843 1.987229756 0.961074764 1.645209201 1.32951041 1.095377765 1.223672304 1.824019407 1 14.72629474 -5.259564782 24.99955611 1.313765058 1.652815018 0.249333438 0.287534208 252.7453827 3370575.415 0.077778591 0.126299363 5.50E-06 5.259564782 0.33904996 WAPHS(ph)PTAS(ph)QPQS(ph)PGDPTSLEEHGGEEPPEEQPHR ddPTM_HeLa_A486_30min_R1 1 WAPHSPTASQPQSPGDPTSLEEHGGEEPPEEQPHR 35 0 Q9Y4B5-4 Q9Y4B5-4 MTCL1 Microtubule cross-linking factor 1 3 0 WAPHS(0.998)PT(0.01)AS(0.991)QPQS(0.969)PGDPT(0.026)S(0.005)LEEHGGEEPPEEQPHR 189.33 1.94E-21 621490000 14260 20748 16391 8231.6 22997 14827 21738 17047 13360 16177 TRUE FALSE FALSE 13260.44764 19103.85292 22738.03417 19163.5808 20112.50182 12997.79549 16298.92248 13165.77023 14518.05556 12126.17391 1.093539293 1.575422971 1.875120243 1.580348505 1.658602456 1.071879357 1.344110896 1.085731603 1.197249493 1 13.5658368 -6.261098625 24.99998591 1.157922275 1.576666237 0.516609986 0.200744186 26.82364903 1968009.689 0.07004868 0.065944404 5.48E-07 6.261098625 0.418743962 WAQFFIHPLMIR ddPTM_HeLa_A485_30min_R1 5 WAQFFIHPLMIR 12 0 O43847;O43847-2;F5H7V1;G3V1R5 O43847 NRD1 Nardilysin 0 0 ;;;; ;;;; 158.31 3.87E-06 258695500 210917.8 279043.5 291283.3 218455.4 373660.2 273453.5 385989.4 374571.8 209064 301852.4 FALSE FALSE TRUE 257835.737 311675.21 399041.114 230389.0653 336457.2785 287771.1024 303519.6114 282707.4787 251021.2272 226606.1519 1.137814375 1.375404893 1.760945635 1.016693781 1.484766745 1.269917432 1.339414702 1.24757195 1.107742332 1 17.7898275 -7.769627638 1.195056715 0.996164592 1.355811933 0.276393293 0.187198535 0.572776695 1.692577849 0.17218716 0.055942749 1.70E-08 7.769627638 0.359647341 WAQFFIHPLMIR ddPTM_HeLa_A486_30min_R1 6 WAQFFIHPLMIR 12 0 O43847;O43847-2;F5H7V1;G3V1R5 O43847 NRD1 Nardilysin 0 0 ;;;;; ;;;;; 168.3 1.53E-06 245309500 220994.8 283657.1 277354.2 114177.6 361790.5 292041.6 374727.6 367897 308289.7 373255.2 FALSE FALSE TRUE 205504.2057 261179.0783 384753.174 265811.223 316411.3619 256012.4767 280966.791 284134.8842 335012.4994 279789.6684 0.734495333 0.933483641 1.375151471 0.950039451 1.130890085 0.915017621 1.00420717 1.015530294 1.19737266 1 18.09398316 -4.521283487 24.99946008 1.069631533 0.784242301 0.396160202 0.128899639 49.64055223 777900.2777 0.032234053 0.088086047 3.01E-05 4.521283487 -0.285389231 WASAAQTIHSS(ph)LPR ddPTM_HeLa_A485_30min_R1 1 WASAAQTIHSSLPR 14 0 C9JFF0;Q9ULI4 C9JFF0 KIF26A Kinesin-like protein;Kinesin-like protein KIF26A 1 0 WASAAQTIHS(0.229)S(0.771)LPR 73.168 0.0063837 92230000 33239 53638 71334 38660 56433 52308 49585 50307 54619 53992 TRUE FALSE FALSE 40632.90088 59910.49751 97723.41506 40771.89791 50814.33237 55046.766 38990.75968 37969.12937 65580.5323 40532.78805 1.002469922 1.478074921 2.41097195 1.005899171 1.253659934 1.358079931 0.961956025 0.936750991 1.61796253 1 15.30680179 WASLADS(ph)YSDPGLTEDGLGR ddPTM_HeLa_A486_30min_R1 1 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 WASLADS(0.533)Y(0.024)S(0.443)DPGLTEDGLGR 75.574 0.0035008 49143000 57973 62005 53756 21501 81470 63009 70215 75733 61899 70832 TRUE FALSE FALSE 53909.39207 57091.49798 74571.76284 50055.4146 71251.27292 55235.59021 52646.46434 58490.24914 67264.45516 53095.20616 1.015334452 1.075266528 1.404491445 0.942748286 1.341953033 1.04031219 0.991548355 1.101610736 1.26686494 1 15.69629399 WASLADSYS(ph)DPGLTEDGLGR ddPTM_HeLa_A485_30min_R1 1 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 WASLADS(0.019)Y(0.045)S(0.935)DPGLTEDGLGR 128.26 5.50E-07 23416000 88372 107370 110210 86585 131870 104460 128990 139670 103640 129660 TRUE FALSE FALSE 108030.0465 119925.9875 150981.2652 91314.91931 118740.5598 109929.3641 101430.2327 105415.7135 124439.5974 97338.14822 1.109842837 1.232055363 1.551100653 0.938120572 1.219876913 1.129355408 1.042039885 1.082984579 1.278425773 1 16.57071771 -5.280446676 24.93971748 1.106111106 1.29110526 0.301717547 0.138288203 1013.881146 1330323.87 0.038551179 0.057282804 5.24E-06 5.280446676 0.184994154 WASLADSYS(ph)DPGLTEDGLGR ddPTM_HeLa_A486_30min_R1 1 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 WASLADS(0.111)Y(0.005)S(0.883)DPGLT(0.001)EDGLGR 102.78 0.00010495 46435000 33610 41690 36238 11055 45162 34813 42200 41398 32751 40597 TRUE FALSE FALSE 31254.11256 38386.33257 50270.32409 25736.59869 39497.36084 30518.12601 31641.11365 31972.57911 35589.88305 30431.24696 1.027040154 1.261411753 1.651931127 0.845729349 1.297921209 1.002854929 1.039757382 1.050649655 1.169517736 1 14.89326583 -5.280862044 24.99314807 1.067103102 1.308256181 0.297567915 0.179390827 1030.53442 1326092.548 0.049792479 0.073976284 5.24E-06 5.280862044 0.241153079 WCFS(ph)EPGKLDR ddPTM_HeLa_A485_30min_R1 1 WCFSEPGKLDR 11 1 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 0 WCFS(1)EPGKLDR 54.343 0.019986 36762000 62432 52973 46288 77441 77544 56320 83618 81573 55554 112000 TRUE FALSE FALSE 76319.78301 59167.73155 63411.8574 81671.40574 69823.44709 59268.82811 65752.3312 61567.09385 66703.17823 84080.46121 0.907699386 0.703703699 0.754180656 0.971348213 0.830436062 0.704906078 0.782016776 0.732240201 0.793325551 1 16.35948296 WCFS(ph)EPGKLDR ddPTM_HeLa_A486_30min_R1 1 WCFSEPGKLDR 11 1 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 0 WCFS(1)EPGKLDR 66.533 0.0082457 37093000 55238 63912 43596 46208 63230 73983 89273 83971 53018 104550 TRUE FALSE FALSE 51366.10145 58847.38036 60477.53874 107574.5592 55299.1038 64855.72966 66935.95117 64852.63637 57613.64293 78369.99949 0.655430672 0.750891677 0.771692473 1.372649737 0.705615722 0.827558123 0.854101717 0.827518652 0.735149206 1 16.25801387 -5.014685311 24.93830296 0.897189057 0.717693775 0.177901624 0.177799873 1196.4017 2031714.633 0.048691269 0.088490772 9.67E-06 5.014685311 -0.179495282 WCNEHLK ddPTM_HeLa_A485_30min_R1 3 WCNEHLK 7 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-4;O75369-5;Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;Q14315-2;Q14315 O75369-8;Q60FE5;Q14315-2 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C 0 0 ;; ;; 116.37 0.0083989 955330000 992340 1115050 883210 1128700 1394330 1192880 1498030 1632330 1029770 1505510 FALSE FALSE TRUE 1213082.609 1245445.398 1209946.132 1190358.023 1255505.609 1255337.352 1177963.653 1231998.508 1236435.393 1130214.064 1.073321106 1.101955318 1.070545989 1.053214662 1.110856474 1.110707602 1.04224827 1.090057669 1.093983373 1 20.10816462 -10.71763929 2.453215747 0.983178918 1.082948748 0.559997846 0.022068325 3486128.608 2557192.014 359342.5772 0.005570317 1.92E-11 10.71763929 0.099769829 WCNEHLK ddPTM_HeLa_A486_30min_R1 2 WCNEHLK 7 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-4;O75369-5;Q60FE5;P21333-2;P21333;A0A087WWY3;F8WE98;Q14315-2;Q14315 O75369-8;Q60FE5;Q14315-2 FLNB;FLNA;FLNC Filamin-B;Filamin-A;Filamin-C 0 0 ; ; 107.29 0.011393 813090000 1242250 1175840 846900 475800 1566630 1266520 1362010 1422590 1069640 1561090 FALSE FALSE TRUE 1155174.69 1082662.156 1174842.361 1107686.446 1370128.657 1110269.639 1021220.692 1098697.312 1162357.256 1170182.903 0.987174472 0.925207635 1.00398182 0.946592573 1.170867096 0.948800086 0.872701771 0.938910754 0.993312459 1 20.15830261 -9.187491808 11.36934761 1.000005233 0.975579639 0.008862816 0.074441899 0 0 0.075159852 0.018228942 6.49E-10 9.187491808 -0.024425594 WCNVQSTQDEFEELTMS(ph)QK ddPTM_HeLa_A485_30min_R1 4 WCNVQSTQDEFEELTMSQK 19 0 D6RCP9;D6RFG8;P27707 D6RCP9 DCK Deoxycytidine kinase 1 0 WCNVQSTQDEFEELTMS(1)QK;WCNVQSTQDEFEELT(0.001)MS(0.999)QK;WCNVQSTQDEFEELT(0.01)MS(0.99)QK;WCNVQSTQDEFEELT(0.004)MS(0.996)QK ;;; 183.42 2.98E-18 253342000 221782 194537 138581 244835 228543 195782 299941 282571 154474 329481 TRUE FALSE FALSE 271116.6408 217286.4099 189847.8787 258209.7161 205788.4565 206032.8428 235856.1551 213270.0192 185475.5149 247347.4503 1.096096363 0.878466342 0.767535216 1.04391501 0.831981313 0.832969341 0.953541889 0.862228492 0.749858204 1 17.9161795 -4.261820583 8.925400461 0.876611938 1.09710326 0.340382774 0.090111897 0.089214464 140.3643579 0.021498165 0.120869673 5.47E-05 4.261820583 0.220491323 WCNVQSTQDEFEELTMS(ph)QK ddPTM_HeLa_A486_30min_R1 1 WCNVQSTQDEFEELTMSQK 19 0 D6RCP9;D6RFG8;P27707 D6RCP9 DCK Deoxycytidine kinase 1 0 WCNVQSTQDEFEELT(0.001)MS(0.999)QK 137.61 1.49E-09 0 86144 85199 49562 42976 77637 97316 111600 106680 68484 117400 TRUE FALSE FALSE 80105.75045 78447.52095 68753.73372 100050.2999 67899.04352 85310.14136 83676.49962 82391.29281 74420.24826 88002.27585 0.910269077 0.891426048 0.781272223 1.136905823 0.771560086 0.969408354 0.950844723 0.936240478 0.845662769 1 16.42525321 WDEQTSNTKGDDDEES(ph)DEEAVK ddPTM_HeLa_A486_30min_R1 1 WDEQTSNTKGDDDEESDEEAVK 22 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 WDEQTSNTKGDDDEES(1)DEEAVK 148 7.48E-10 91887000 73623 85486 27250 84552 72647 135350 184820 150710 76640 168420 TRUE FALSE FALSE 68462.40789 78711.77803 37801.92978 196841.329 63534.93585 118651.8931 138576.0812 116396.623 83283.21691 126246.5358 0.542291378 0.623476736 0.299429442 1.559182023 0.503260826 0.939842764 1.097662445 0.921978748 0.659687146 1 16.94588428 -5.193735031 24.99999692 0.937828021 0.501906864 0.380309513 0.271913448 196.6430405 72610.15991 0.070559 0.122211794 6.40E-06 5.193735031 -0.435921157 WDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_HeLa_A485_30min_R1 1 WDEQTSNTKGDDDEESDEEAVKK 23 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 WDEQTSNTKGDDDEES(1)DEEAVKK 242.56 3.60E-49 448480000 193760 68939 48627 632930 192650 116460 273040 179930 97958 987320 TRUE FALSE FALSE 236861.2435 77000.81636 66616.15084 667505.3632 173469.0896 122557.6655 214702.7735 135801.8854 117617.2721 741199.2943 0.319564853 0.103886791 0.089876166 0.900574742 0.23403839 0.165350489 0.289669425 0.183219124 0.158685084 1 19.49950198 -10.87987383 2.580868357 1.355752461 0.273565007 0.49212849 0.221964266 42864486.76 24922252.46 93074427.37 0.0596993 1.32E-11 10.87987383 -1.082187454 WDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_HeLa_A486_30min_R1 3 WDEQTSNTKGDDDEESDEEAVKK 23 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 WDEQTSNTKGDDDEES(1)DEEAVKK;WDEQTSNTKGDDDEES(1)DEEAVKK;WDEQTSNTKGDDDEES(1)DEEAVKK ;; 229.7 7.44E-39 1955830000 628690 760590 200046 1146500 621870 1432520 2201950 1747200 622080 2196910 TRUE FALSE FALSE 584622.0776 700318.0784 277509.1686 2669109.941 543869.2659 1255790.247 1650998.82 1349400.701 676002.3953 1646789.437 0.355007182 0.425262673 0.168515271 1.620796127 0.330260356 0.762568802 1.002556115 0.819413017 0.410497165 1 20.65122467 WDET(ph)PGR ddPTM_HeLa_A485_30min_R1 8 WDETPGR 7 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR ;;;;;;; 144.5 0.0062869 12854740000 8299020 9296800 8464200 8876070 11356920 8888510 12202130 11654660 7855090 10896410 TRUE FALSE FALSE 10145108.37 10383979.89 11595459.8 9360947.229 10226185.17 9353898.639 9595045.243 8796336.361 9431534.512 8180135.521 1.24021275 1.269414163 1.417514389 1.144351118 1.250124175 1.143489447 1.172968983 1.075328928 1.152980227 1 22.96369331 -6.784959973 0.368728035 1.006092519 1.326016673 0.622708145 0.067076022 0.887340013 0.299914471 0.079778357 0.1003255 1.64E-07 6.784959973 0.319924154 WDET(ph)PGR ddPTM_HeLa_A486_30min_R1 4 WDETPGR 7 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDET(1)PGR;WDET(1)PGR;WDET(1)PGR;WDET(1)PGR ;;; 189.72 0.0020183 10908570000 9397610 10742920 8335090 3642570 11094260 9781900 11848090 12026100 8084640 9826220 TRUE FALSE FALSE 8738886.068 9891611.894 11562660.07 8480087.045 9702714.461 8575108.633 8883572.566 9288019.558 8785423.105 7365670.554 1.186434555 1.342934336 1.569804132 1.151298715 1.317288683 1.164199318 1.206077912 1.260987644 1.192752654 1 22.81238544 -9.090758473 0.199106191 0.847646858 1.382460838 0.390286419 0.111318394 10.90423654 0.770661696 1.500575266 0.403702799 8.11E-10 9.090758473 0.53481398 WDET(ph)PKTER ddPTM_HeLa_A485_30min_R1 2 WDETPKTER 9 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDET(1)PKTER;WDET(0.999)PKT(0.001)ER ; 167.44 1.00E-05 783930000 826830 526770 625830 1886600 1328350 734970 1416430 1059840 844700 2540300 TRUE FALSE FALSE 1010755.481 588371.1692 857350.56 1989660.181 1196094.81 773451.8927 1113798.159 799912.5782 1014223.542 1907049.961 0.530009964 0.308524255 0.449569008 1.04331833 0.627196368 0.405575055 0.584042465 0.419450248 0.531828511 1 20.86291121 -11.08840628 2.290335472 1.725108054 0.545182888 0.343381848 0.189005854 13330517.48 3802453.089 50412335.26 0.051342053 8.16E-12 11.08840628 -1.179925166 WDET(ph)PKTER ddPTM_HeLa_A486_30min_R1 3 WDETPKTER 9 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDET(1)PKTER;WDET(0.926)PKT(0.074)ER;WDET(0.997)PKT(0.003)ER ;; 172.99 4.98E-06 1431320000 1226170 1490640 854620 1201190 1659680 2086880 2713200 2496520 1323170 2339920 TRUE FALSE FALSE 1140221.815 1372516.258 1185551.752 2796431.025 1451507.458 1829421.963 2034328.663 1928116.895 1437863.441 1753988.802 0.6500736 0.782511414 0.675917515 1.594326613 0.827546594 1.043006638 1.159829904 1.099275487 0.819767743 1 20.74220811 WDETPASQMGGST(ph)PVLTPGK ddPTM_HeLa_A485_30min_R1 1 WDETPASQMGGSTPVLTPGK 20 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDETPASQMGGS(0.125)T(0.875)PVLTPGK 188.6 4.47E-21 0 47006 39344 34095 63753 61364 39499 49914 49543 42605 84241 TRUE FALSE FALSE 57462.32253 43944.93855 46708.15931 67235.66496 55254.3847 41567.10656 39249.46614 37392.50157 51155.4327 63241.26904 0.908620643 0.694877557 0.738570873 1.063161223 0.873707715 0.657278185 0.62063059 0.591267413 0.808893203 1 15.9485787 -6.255760454 24.59382857 0.702881635 0.851856877 0.129237283 0.143751787 637.2212884 2759628.442 0.048622126 0.047318357 5.55E-07 6.255760454 0.148975242 WDGS(ph)EEDEDNSK ddPTM_HeLa_A485_30min_R1 4 WDGSEEDEDNSK 12 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK ;;; 361.96 8.52E-88 6383520000 4334660 3492250 2571730 7189300 4903660 4192850 7478350 6988250 3394160 9011180 TRUE FALSE FALSE 5298890.163 3900638.259 3523119.946 7582033.255 4415434.393 4412381.143 5880539.43 5274370.73 4075336.779 6764858.664 0.783296507 0.576603068 0.520797273 1.120796994 0.652701647 0.652250307 0.8692775 0.779671977 0.602427483 1 22.68962836 -11.67800831 2.143623296 8.649603989 0.730751976 0.195209912 0.165240117 6199074.568 269904.827 232256575.6 0.041396257 2.10E-12 11.67800831 -7.918852012 WDGS(ph)EEDEDNSK ddPTM_HeLa_A486_30min_R1 5 WDGSEEDEDNSK 12 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK ;;;; 373.45 7.32E-162 11665240000 8102620 7690480 4037080 4672290 7229300 9680890 12725360 11320380 6357380 13631740 TRUE FALSE FALSE 7534668.18 7081058.357 5600345.493 10877327.24 6322533.783 8486560.22 9541340.333 8742976.596 6908442.817 10218263.58 0.737372659 0.692980593 0.548072131 1.064498597 0.618748355 0.830528608 0.933753593 0.855622536 0.676087749 1 23.28464672 -4.922463626 0.046871602 1.471681959 1.81E-10 0.206094903 0.143324603 350.1071224 3.248636502 38.33050186 65.55182019 1.20E-05 4.922463626 -1.471681959 WDGS(ph)EEDEDNSKK ddPTM_HeLa_A485_30min_R1 3 WDGSEEDEDNSKK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 WDGS(0.987)EEDEDNS(0.013)KK;WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK ;; 217.19 7.93E-27 5242550000 1264934 787229 422929 2562529 1292912 1230264 2183319 1964782 882288 3557674 TRUE FALSE FALSE 1546314.204 879288.5836 579388.0366 2702513.471 1164185.142 1294678.721 1716835.06 1482916.134 1059355.109 2670811.346 0.578967963 0.329221525 0.216933344 1.011869848 0.435891941 0.484751094 0.642814051 0.55523058 0.396641684 1 21.34884664 -11.33747775 2.146247538 3.551489517 0.518637594 0.336829716 0.203336849 25934883.05 2777036.929 321518714.4 0.051358234 4.60E-12 11.33747775 -3.032851922 WDGS(ph)EEDEDNSKK ddPTM_HeLa_A486_30min_R1 3 WDGSEEDEDNSKK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK ;; 252.46 1.08E-40 3368810000 1627970 1443770 518230 1242200 1132450 2035100 2873920 2500660 1091360 3422660 TRUE FALSE FALSE 1513857.71 1329360.407 718902.5347 2891904.377 990407.5613 1784030.053 2154834.819 1931314.307 1185959.964 2565603.658 0.590059071 0.518147222 0.280207947 1.127182824 0.386032955 0.695364636 0.839893883 0.752771887 0.46225377 1 21.29086689 -14 0.079848224 2.082736548 0.298797061 0.189047307 0.23121457 434.3769132 2.451685883 85.03995905 7.956934491 1.00E-14 14 -1.783939487 WDKDDFES(ph)EEEDVK ddPTM_HeLa_A485_30min_R1 6 WDKDDFESEEEDVK 14 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK ;;;;; 217.26 6.38E-28 4940320000 4358390 2591376 1492343 8311240 3223430 3279963 5861700 4341120 2373961 10574060 TRUE FALSE FALSE 5327898.819 2894414.881 2044422.777 8765261.996 2902493.991 3451696.791 4609299.909 3276453.513 2850393.197 7938141.443 0.671177108 0.364621228 0.257544262 1.104195744 0.365638986 0.434824299 0.580652278 0.41274819 0.359075637 1 22.92036984 -10.20711019 4.785995087 1.000079395 0.50504877 0.294307477 0.229665867 0.000192045 3.18E-05 0.219492461 0.053226245 6.21E-11 10.20711019 -0.495030625 WDKDDFES(ph)EEEDVK ddPTM_HeLa_A486_30min_R1 8 WDKDDFESEEEDVK 14 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK ;;;;;;; 235.21 1.88E-35 7539360000 5042320 4020591 1109611 3536522 2559354 5447870 7636830 5885960 3154187 10819770 TRUE FALSE FALSE 4688879.407 3701984.726 1539282.096 8233201.942 2238335.956 4775767.189 5726014.36 4545855.398 3427594.469 8110429.167 0.578129629 0.456447452 0.189790462 1.015137642 0.275982431 0.588842722 0.706006334 0.56049505 0.422615672 1 22.95134683 -14 0.362979344 6.82318806 0.521958582 0.290352995 0.217530797 641.6978413 5.08238604 2923.239921 0.153835693 1.00E-14 14 -6.301229477 WDKDDFES(ph)EEEDVKSTQPISSVGKPASVIK ddPTM_HeLa_A485_30min_R1 1 WDKDDFESEEEDVKSTQPISSVGKPASVIK 30 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 WDKDDFES(1)EEEDVKSTQPISSVGKPASVIK 176.12 5.46E-15 835180000 758650 403910 232490 1563200 900840 948590 2096000 2176600 617260 2325800 TRUE FALSE FALSE 927409.0752 451143.761 318497.7257 1648593.658 811149.2066 998256.7056 1648172.477 1642785.437 741138.4202 1746020.863 0.531155781 0.258383946 0.182413471 0.944200435 0.464570168 0.571732404 0.943959211 0.940873888 0.424472832 1 20.73563937 -5.553875853 0.89425333 0.790401363 0.317075722 0.336414614 0.237761393 0.765418589 1.257285904 0.111846382 0.237934092 2.79E-06 5.553875853 -0.473325641 WDPTGEQRPPPQGETGKEGWDPAVLASEGLEAPPS(ph)EK ddPTM_HeLa_A485_30min_R1 1 WDPTGEQRPPPQGETGKEGWDPAVLASEGLEAPPSEK 37 2 P48681 P48681 NES Nestin 1 0 WDPTGEQRPPPQGETGKEGWDPAVLASEGLEAPPS(1)EK 66.683 0.00094013 113280000 54547 99883 28236 49208 32985 70904 104310 131950 28303 60438 TRUE FALSE FALSE 66680.79197 111563.448 38681.6714 51896.10844 29700.89758 74616.4238 82023.31637 99589.05561 33983.15249 45371.91888 1.469648929 2.458865544 0.852546517 1.143793556 0.654609686 1.644550763 1.80779915 2.194949168 0.748990859 1 15.46951206 WDQTADQT(ph)PGAT(ph)PK ddPTM_HeLa_A485_30min_R1 4 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 WDQTADQT(1)PGAT(1)PK;WDQTADQT(1)PGAT(1)PK;WDQT(0.017)ADQT(0.983)PGAT(1)PK;WDQT(0.008)ADQT(0.992)PGAT(1)PK ;;; 188.09 6.12E-16 690000000 915412 804436 677532 1377220 1181515 889725 1402290 1298590 785660 1784420 TRUE FALSE FALSE 1119042.241 898507.7925 928179.2813 1452454.041 1063879.218 936309.6252 1102679.286 980108.7664 943334.7555 1339596.934 0.835357422 0.670729956 0.692879521 1.084247063 0.7941786 0.698948767 0.823142587 0.731644528 0.704192979 1 20.35336755 -11.38354429 2.226139567 2.554374988 0.782403981 0.245416759 0.114828381 17965612.23 1661922.148 140899485 0.029642822 4.13E-12 11.38354429 -1.771971006 WDQTADQT(ph)PGAT(ph)PK ddPTM_HeLa_A486_30min_R1 2 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 WDQT(0.002)ADQT(0.998)PGAT(1)PK;WDQTADQT(1)PGAT(1)PK ; 213.03 1.98E-22 753430000 1187930 1235180 742490 772150 1228920 1394100 1818650 1716290 901080 1859640 TRUE FALSE FALSE 1104662.241 1137299.838 1030002.013 1797604.222 1074777.394 1222110.116 1363604.534 1325528.233 979186.3399 1393974.04 0.79245539 0.815868736 0.738896122 1.289553586 0.771016794 0.87670938 0.978213722 0.950898794 0.702442307 1 20.41077226 WDQTADQTPGAT(ph)PK ddPTM_HeLa_A485_30min_R1 3 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK ;; 267.57 1.59E-41 2153860000 1117740 974700 753540 1982260 1333980 1088750 1897670 1570760 957610 2422340 TRUE FALSE FALSE 1366377.407 1088682.686 1032305.803 2090545.844 1201164.267 1145755.266 1492217.302 1185528.647 1149793.543 1818495.218 0.751378059 0.598672284 0.567670343 1.149602058 0.660526492 0.630056794 0.820578073 0.651928383 0.632277463 1 20.7943137 -11.08671423 2.426002225 1.455116403 0.719620713 0.217333955 0.160476551 14546257.59 3992769.58 36628797.01 0.041974511 8.19E-12 11.08671423 -0.73549569 WDQTADQTPGAT(ph)PK ddPTM_HeLa_A486_30min_R1 5 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDQTADQT(0.001)PGAT(0.999)PK;WDQTADQT(0.002)PGAT(0.998)PK;WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK ;;;; 283.88 1.29E-48 3108110000 3001150 2915940 1410837 1805520 2511050 3288410 4374440 3986940 2435140 5057910 TRUE FALSE FALSE 2790784.883 2684870.295 1957150.87 4203341.806 2196090.694 2882719.408 3279908.844 3079200.796 2646219.896 3791376.415 0.736087525 0.708151869 0.516211174 1.108658531 0.579233095 0.76033585 0.865097127 0.812159084 0.697957577 1 21.85429027 -14 0.15113056 1.852132711 0.683186917 0.193349952 0.152621516 226.0953313 2.019687726 58.11546648 0.740927926 1.00E-14 14 -1.168945795 WDS(ph)YENLSADGEVLHTQGPVDGSLYAK ddPTM_HeLa_A485_30min_R1 1 WDSYENLSADGEVLHTQGPVDGSLYAK 27 0 Q68CZ2;E9PCX8;C9JHU5;Q68CZ2-3 Q68CZ2 TNS3 Tensin-3 1 0 WDS(0.982)Y(0.001)ENLS(0.017)ADGEVLHTQGPVDGSLYAK 136.48 2.02E-06 405060000 49748 46786 48966 74512 62419 44841 55411 61041 37981 85389 TRUE FALSE FALSE 60814.27097 52257.21572 67080.56105 78582.40189 56204.34519 47188.80542 43571.98718 46070.59904 45603.43832 64103.09377 0.948694788 0.815205829 1.046448106 1.22587534 0.87678054 0.736139282 0.679717384 0.718695407 0.71140776 1 15.96810637 -5.999484802 24.99801237 0.752733986 1.004561388 0.442424333 0.126223904 16.67139407 808836.5348 0.040861095 0.04591326 1.00E-06 5.999484802 0.251827402 WDS(ph)YENLSADGEVLHTQGPVDGSLYAK ddPTM_HeLa_A486_30min_R1 4 WDSYENLSADGEVLHTQGPVDGSLYAK 27 0 Q68CZ2;E9PCX8;C9JHU5;Q68CZ2-3 Q68CZ2 TNS3 Tensin-3 1 0 WDS(1)YENLSADGEVLHTQGPVDGSLYAK;WDS(0.996)YENLS(0.004)ADGEVLHTQGPVDGSLYAK;WDS(1)YENLSADGEVLHTQGPVDGSLYAK;WDS(0.946)Y(0.01)ENLS(0.044)ADGEVLHTQGPVDGSLYAK ;;; 295.3 4.22E-92 6870580000 1025215 1282963 713274 509863 1140141 1359834 1672935 1593459 978907 1510512 TRUE FALSE FALSE 953352.7227 1181296.339 989472.7949 1186986.831 997133.8844 1192071.507 1254348.968 1230663.171 1063759.447 1132269.963 0.841983585 1.043299193 0.873884168 1.048324931 0.880650301 1.052815623 1.107817931 1.08689907 0.939492772 1 20.11078655 -6.286232835 23.85312499 1.0472371 0.94610749 0.288326151 0.077040047 546.7857538 526045.4128 0.025717064 0.022692048 5.17E-07 6.286232835 -0.10112961 WEAERDDWLHNR ddPTM_HeLa_A485_30min_R1 1 WEAERDDWLHNR 12 1 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 0 126.1 0.00013757 153520000 51624 72121 75870 45404 109120 79139 97149 120690 62105 69227 FALSE FALSE TRUE 63107.5807 80554.92358 103937.4702 47884.30555 98255.62966 83282.59567 76392.32252 91090.58827 74568.90384 51969.98293 1.214308282 1.550027902 1.999951979 0.9213839 1.890622704 1.602513431 1.469931645 1.752753862 1.434845648 1 15.66539096 -8.024172236 22.78657924 0.999999986 1.557078522 0.236289478 0.296139355 939.6131717 885751.5283 0.270952987 0.069959761 9.46E-09 8.024172236 0.557078536 WEEEKDRWS(ph)DNQSSGK ddPTM_HeLa_A486_30min_R1 1 WEEEKDRWSDNQSSGK 16 2 Q9NRR4;Q9NRR4-3;Q9NRR4-4;H0YB67;Q9NRR4-2;H7C5U6 Q9NRR4 DROSHA Ribonuclease 3 1 0 WEEEKDRWS(1)DNQSSGK 100.53 0.0002168 243430000 155840 169950 68607 104560 142180 224540 279550 239080 162320 280850 TRUE FALSE FALSE 144916.4208 156482.5431 95173.46776 243420.9642 124346.4586 196838.5378 209603.6332 184646.7031 176390.0283 210523.332 0.688362755 0.743302614 0.452080379 1.156265968 0.59065405 0.934996306 0.995631369 0.877084271 0.83786451 1 17.68362061 -5.251844602 24.99676765 0.89899398 0.639454005 0.418895129 0.153167213 707.0187098 1841955.041 0.040212461 0.068503855 5.60E-06 5.251844602 -0.259539975 WEETRTPESQPDT(ph)PPGTPLVSQDEKR ddPTM_HeLa_A485_30min_R1 2 WEETRTPESQPDTPPGTPLVSQDEKR 26 2 A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 A0A0D9SEV0 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 0 WEETRTPESQPDT(0.998)PPGT(0.002)PLVSQDEKR;WEETRTPES(0.005)QPDT(0.977)PPGT(0.015)PLVS(0.002)QDEKR ; 121.7 4.90E-05 1389570000 487310 785580 577960 498840 831930 1152160 1512810 2003890 672600 736220 TRUE FALSE FALSE 595710.4283 877446.7474 791771.4549 526090.3661 749100.1281 1212485.316 1189585.785 1512432.836 807584.6505 552693.9031 1.077830649 1.587581738 1.432567739 0.951865695 1.355361664 2.193773641 2.152341067 2.736474615 1.461178866 1 19.07612117 -6.218391941 7.114136281 2.032267647 1.285489817 0.292517084 0.468995733 0.261609007 36.50643969 0.150018239 0.148879561 6.05E-07 6.218391941 -0.74677783 WEETRTPESQPDT(ph)PPGTPLVSQDEKR ddPTM_HeLa_A486_30min_R1 2 WEETRTPESQPDTPPGTPLVSQDEKR 26 2 A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 A0A0D9SEV0 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 0 WEETRTPESQPDT(1)PPGTPLVSQDEKR;WEETRTPES(0.001)QPDT(0.997)PPGT(0.001)PLVSQDEKR ; 136.73 2.69E-06 626730000 404060 343290 273130 192986 631590 386370 571120 632540 251311 626070 TRUE FALSE FALSE 375737.4806 316086.4502 378893.2507 449281.161 552370.0929 338703.5977 428219.7353 488524.4503 273094.8398 469297.997 0.800637299 0.673530363 0.807361747 0.95734728 1.177013532 0.721723936 0.912468704 1.040968539 0.581922023 1 18.84014478 -5.055748624 4.574237409 0.916819973 0.736620508 0.171592045 0.158185575 0.343573558 14.97703048 0.042591024 0.079804009 8.80E-06 5.055748624 -0.180199466 WFLTCINQPQFR ddPTM_HeLa_A485_30min_R1 2 WFLTCINQPQFR 12 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 277.96 2.31E-50 145853000 83185 104410 118243 90134 158573 98241 131740 123899 102555 117801 FALSE FALSE TRUE 101689.2163 116619.8413 161986.0062 95057.79219 142784.9153 103384.7469 103592.6728 93512.57598 123136.8478 88435.37867 1.14987031 1.318701215 1.831687823 1.074884211 1.614567806 1.169042847 1.171394009 1.057411382 1.392393516 1 16.43233602 -6.39187965 11.45697639 1.161556695 1.39964194 0.224258888 0.223068196 0.80628366 70.2166794 0.076168115 0.067154417 4.06E-07 6.39187965 0.238085245 WFLTCINQPQFR ddPTM_HeLa_A486_30min_R1 2 WFLTCINQPQFR 12 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 255.07 7.72E-39 134114000 107317 128997 104539 35660 137828 106030 123164 124908 110934 124448 FALSE FALSE TRUE 99794.63249 118774.8079 145019.3005 83018.28216 120540.327 92949.09663 92347.0645 96469.17512 120549.8484 93285.41078 1.069777489 1.273240981 1.554576426 0.889938539 1.292166975 0.996394783 0.989941125 1.034129285 1.292269042 1 16.50936385 -5.273351063 24.94793283 1.07488132 1.296602586 0.29018867 0.163665262 924.6416022 1936575.137 0.045539977 0.068135415 5.33E-06 5.273351063 0.221721266 WFSNPS(ph)R ddPTM_HeLa_A485_30min_R1 6 WFSNPSR 7 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R ;;;;; 127.94 0.0017154 2397000000 1016920 1356070 1326200 982370 1461270 1215560 1536090 1529690 1042270 1210370 TRUE FALSE FALSE 1243130.346 1514650.59 1816816.568 1036034.386 1315780.828 1279204.842 1207891.823 1154531.129 1251444.029 908647.0342 1.368111378 1.666929548 1.999474493 1.140194538 1.448065947 1.407812708 1.329330067 1.27060463 1.377260896 1 19.79336046 -7.216151265 0.192130552 0.873859309 1.797628941 0.38143352 0.205657217 3.357793695 0.631962411 1.102369631 1.299670655 6.08E-08 7.216151265 0.923769632 WFSNPS(ph)R ddPTM_HeLa_A486_30min_R1 6 WFSNPSR 7 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R;WFSNPS(1)R ;;;;; 120.76 0.0019997 1836420000 1329160 1518500 1262340 437471 1447420 1271370 1483760 1450230 1151920 1443590 TRUE FALSE FALSE 1235992.748 1398168.53 1751151.855 1018454.597 1265871.087 1114521.296 1112507.554 1120044.287 1251769.353 1082105.668 1.14221077 1.292081329 1.618281751 0.941178507 1.169822065 1.029956065 1.028095118 1.035059995 1.156790312 1 20.04540995 -5.282840168 24.9993231 1.056068307 1.344980346 0.540153706 0.126467942 604.0423403 705610.3791 0.03541632 0.052586862 5.21E-06 5.282840168 0.288912039 WFVLGVGQVIK ddPTM_HeLa_A485_30min_R1 1 WFVLGVGQVIK 11 0 H7BZJ4;Q9Y680-1;Q9Y680-3;Q9Y680 H7BZJ4 FKBP7 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP7 0 0 111.04 0.0042422 0 3337.2 4119.9 3831.9 3765.6 4125.8 3150.5 5149.4 5588.2 2758 5671.6 FALSE FALSE TRUE 4079.548627 4601.686467 5249.479269 3971.305193 3715.020865 3315.455308 4049.188623 4217.685188 3311.505302 4257.774498 0.958141073 1.080772706 1.232916227 0.932718535 0.872526449 0.778682692 0.951010587 0.990584445 0.777754976 1 12.05588383 -5.451223302 8.222526548 0.892537027 1.089377312 0.464033289 0.094356016 0.296781739 31.43639489 0.026805966 0.039728565 3.54E-06 5.451223302 0.196840285 WFWLLPVK ddPTM_HeLa_A485_30min_R1 2 WFWLLPVK 8 0 Q5T3Q7;Q9H583 Q5T3Q7 HEATR1 "HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed" 0 0 ; ; 135.36 0.0014084 1823600 10089.6 10128 10659.7 11582.8 16822.1 7380.8 13296.7 11327.3 10452.5 19209.9 FALSE FALSE TRUE 12333.99671 11312.3815 14603.16662 12215.53903 15147.23266 7767.247275 10455.75142 8549.261914 12550.22087 14421.22546 0.855266894 0.784425812 1.012616206 0.847052774 1.050342961 0.538598283 0.725025169 0.592824926 0.870260361 1 13.81590614 -6.254866224 24.98574767 0.718623519 0.905178255 0.239385427 0.142656377 666.3282501 2532835.404 0.045354147 0.044331068 5.56E-07 6.254866224 0.186554736 WFWLLPVK ddPTM_HeLa_A486_30min_R1 2 WFWLLPVK 8 0 Q5T3Q7;Q9H583 Q5T3Q7 HEATR1 "HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed" 0 0 ; ; 135.36 0.0015394 4998500 19530.5 21563.2 15119.3 9528.5 19215.5 22426 28083.5 22759 19139.2 22454.4 FALSE FALSE TRUE 18161.51281 19854.4535 20973.89787 22182.82954 16805.31281 19659.30813 21056.71126 17577.27253 20798.20127 16831.67209 1.079008236 1.179588896 1.246097106 1.317921917 0.998433948 1.167994958 1.251017199 1.044297467 1.235658653 1 14.03889088 -13.39984781 0.313718822 6.06E-16 1.177579138 0.211161976 0.096405317 323.2516105 4.196190615 211.0918424 0.090175095 3.98E-14 13.39984781 1.177579138 WFYIVVVPIDR ddPTM_HeLa_A485_30min_R1 1 WFYIVVVPIDR 11 0 H0Y380;H0Y4H1;H0Y7Z9;H0Y6Z7;P10586-2;P10586 H0Y380 PTPRF Receptor-type tyrosine-protein phosphatase F 0 0 145.92 0.0007565 5595600 4261.2 4249.5 5383.8 2784.1 6562.9 4795.7 6940.5 6118.8 3895.3 5924.3 FALSE FALSE TRUE 5209.089239 4746.442059 7375.491659 2936.188333 5909.474632 5046.795436 5457.605476 4618.154706 4677.05098 4447.481039 1.171244845 1.067220302 1.658352581 0.66019131 1.328723963 1.134753671 1.227122821 1.038375356 1.05161797 1 12.11877274 -7.278279706 20.98778817 1.033747204 1.17661807 0.078670784 0.23231029 299.9949082 373864.3456 0.120252643 0.05820657 5.27E-08 7.278279706 0.142870865 WFYIVVVPIDR ddPTM_HeLa_A486_30min_R1 1 WFYIVVVPIDR 11 0 H0Y380;H0Y4H1;H0Y7Z9;H0Y6Z7;P10586-2;P10586 H0Y380 PTPRF Receptor-type tyrosine-protein phosphatase F 0 0 110.87 0.0068047 3920400 2107.8 2568.9 3161.1 1428.4 4024.5 2851.8 3085.4 3295.1 2288.7 3545.1 FALSE FALSE TRUE 1960.054105 2365.331008 4385.162577 3325.387387 3519.709683 2499.973911 2313.400286 2544.877662 2487.086359 2657.383885 0.737587864 0.890097596 1.650180315 1.251376365 1.324501779 0.94076506 0.870555549 0.957662788 0.935915346 1 11.37579094 -6.289102449 20.55817447 0.933931631 1.186271318 0.195663904 0.231643904 141.1561958 104900.032 0.088263947 0.077893802 5.14E-07 6.289102449 0.252339687 WGDEHIPGSPYR ddPTM_HeLa_A485_30min_R1 2 WGDEHIPGSPYR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 148.18 5.41E-07 1695840000 1566120 2019620 1772400 1627590 2355300 2007550 2441800 2574100 1802930 2295700 FALSE FALSE TRUE 1914497.991 2255796.991 2428084.516 1716501.12 2120798.062 2112662.214 1920089.482 1942797.939 2164761.514 1723424.239 1.110868669 1.308904064 1.408872209 0.995982928 1.230572261 1.225851514 1.114113077 1.127289436 1.256081622 1 20.71684645 -14 0.139104264 0.326816788 1.269816226 0.220110103 0.110851679 211.8471063 1.808065793 39.63314655 0.702479743 1.00E-14 14 0.942999438 WGDEHIPGSPYR ddPTM_HeLa_A486_30min_R1 4 WGDEHIPGSPYR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 105.65 0.0019459 1686270000 2613200 2814820 2288700 815780 3351790 2663650 2961280 3021730 2464220 2894420 FALSE FALSE TRUE 2430028.175 2591763.412 3174945.934 1899177.067 2931377.244 2335035.945 2220336.423 2333748.043 2677820.574 2169638.392 1.120015291 1.19456008 1.463352577 0.875342672 1.351090234 1.076232774 1.023367041 1.075639171 1.234224368 1 21.04902318 -5.97505377 1.006816482 1.087295635 1.216436664 0.091699038 0.15741363 1.353724869 2.957606854 0.077622291 0.094655888 1.06E-06 5.97505377 0.129141029 WGDKPGVSPSIGLSVGSGWPSS(ph)PGSDPPLPKPCGDHPLNHR ddPTM_HeLa_A485_30min_R1 2 WGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHR 41 2 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 0 WGDKPGVSPSIGLSVGS(0.001)GWPS(0.157)S(0.709)PGS(0.134)DPPLPKPCGDHPLNHR;WGDKPGVSPSIGLSVGSGWPS(0.18)S(0.797)PGS(0.022)DPPLPKPCGDHPLNHR ; 141.52 4.40E-11 425000000 147356 117300 89245 146925 154761 143266 184982 208237 120156 195243 TRUE FALSE FALSE 180134.8338 131017.2146 122260.4393 154951.1407 139352.4514 150767.1862 145459.0845 157166.5492 144270.2071 146572.5133 1.228980999 0.893873017 0.834129378 1.057163702 0.950740683 1.028618415 0.992403564 1.072278463 0.984292374 1 17.16125505 -6.286189985 23.74088559 1.01859128 0.982212736 0.006244572 0.101205734 1993.303177 1911974.59 0.035680827 0.031484428 5.17E-07 6.286189985 -0.036378545 WGPRPGS(ph)SR ddPTM_HeLa_A485_30min_R1 1 WGPRPGSSR 9 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 WGPRPGS(0.956)S(0.044)R 56.205 0.0072962 0 76308 101820 97713 93833 100580 91774 102590 83006 91593 112270 TRUE FALSE FALSE 93282.45134 113726.9633 133861.1049 98958.85919 90565.90204 96579.14473 80670.80842 62648.64835 109974.875 84283.15518 1.106774552 1.349343923 1.588230823 1.174123809 1.074543328 1.145889051 0.957140347 0.743311617 1.30482627 1 16.3629567 -5.587147811 3.405492932 1.025662344 1.352889639 0.387479361 0.17301326 0.237471526 5.583605835 0.053498246 0.072897063 2.59E-06 5.587147811 0.327227295 WGPRPGS(ph)SR ddPTM_HeLa_A486_30min_R1 2 WGPRPGSSR 9 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 WGPRPGS(0.953)S(0.047)R;WGPRPGS(0.975)S(0.025)R ; 73.632 0.0060625 191715000 181182 210568 160031 67879 220160 181352 197972 210420 200397 210120 TRUE FALSE FALSE 168482.0774 193881.8248 221999.289 158025.7424 192545.4799 158978.6341 148437.3117 162511.9594 217767.5733 157504.5843 1.06969634 1.230959884 1.409478269 1.003308844 1.222475401 1.009358774 0.94243169 1.031791932 1.382611016 1 17.26503429 -5.286298103 24.91502557 1.082582952 1.236136411 0.189302738 0.144239896 1200.487368 1203203.808 0.041127251 0.06102856 5.17E-06 5.286298103 0.153553459 WGQPPS(ph)PTPVPRPPDADPNT(ph)PS(ph)PKPLEGRPER ddPTM_HeLa_A485_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 3 0 WGQPPS(0.936)PT(0.066)PVPRPPDADPNT(0.999)PS(1)PKPLEGRPER 63.116 0.0048211 368020000 91873 75333 60518 155850 127340 100840 162670 144280 78547 206320 TRUE FALSE FALSE 112309.8319 84142.53904 82906.12656 164363.6909 114661.5825 106119.8265 127914.2256 108895.1038 94310.66242 154888.221 0.725102472 0.543246856 0.535264244 1.061176181 0.740286006 0.685138132 0.825848633 0.703056069 0.608894994 1 17.24086791 -11.5627394 2.238165813 6.144882321 0.717001676 0.261826845 0.143884537 9643175.927 380664.0793 254985776.6 0.037389651 2.74E-12 11.5627394 -5.427880645 WGQPPS(ph)PTPVPRPPDADPNT(ph)PS(ph)PKPLEGRPER ddPTM_HeLa_A486_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 3 0 WGQPPS(0.966)PT(0.034)PVPRPPDADPNT(1)PS(1)PKPLEGRPER 113.51 3.81E-05 213340000 78028 71321 42445 40436 64465 85166 100750 102860 63873 131730 TRUE FALSE FALSE 72558.64014 65669.26421 58880.84072 94137.05152 56379.19859 74659.08482 75541.28438 79441.02342 69409.56307 98743.95058 0.734816054 0.665045948 0.596298207 0.953345 0.57096357 0.756087683 0.765021897 0.804515344 0.702924712 1 16.59140475 -14 0.202174604 2.253686876 0.685449936 0.398767139 0.101746585 140.9588461 1.397339194 71.33888788 0.230192745 1.00E-14 14 -1.56823694 WGQPPS(ph)PTPVPRPPDADPNT(ph)PSPKPLEGRPER ddPTM_HeLa_A485_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 WGQPPS(0.969)PT(0.038)PVPRPPDADPNT(0.892)PS(0.101)PKPLEGRPER 69.613 0.011195 265190000 107250 102710 90776 176320 144760 120280 165950 162570 105000 271830 TRUE FALSE FALSE 131107.3925 114721.041 124357.8199 185951.9151 130347.1861 126577.6748 130493.4268 122699.4526 126072.5369 204067.7837 0.642469821 0.56217125 0.609394671 0.91122622 0.638744557 0.620272698 0.639461185 0.60126812 0.617797354 1 17.63868892 -11.0954959 2.876531864 1.658213208 0.650322245 0.573974929 0.090662763 4850200.434 13596294.39 21924129.16 0.024115496 8.03E-12 11.0954959 -1.007890963 WGQPPS(ph)PTPVPRPPDADPNTPS(ph)PKPLEGRPER ddPTM_HeLa_A485_30min_R1 2 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 WGQPPS(0.994)PT(0.006)PVPRPPDADPNT(0.267)PS(0.733)PKPLEGRPER;WGQPPS(0.935)PT(0.036)PVPRPPDADPNT(0.065)PS(0.964)PKPLEGRPER ; 121.08 7.78E-06 481990000 249595 210170 182433 411519 326095 279335 406031 395699 236323 544120 TRUE FALSE FALSE 305116.5467 234747.5533 249922.5584 433999.2409 293627.8368 293960.5487 319279.1599 298653.1998 283750.8584 408480.8978 0.74695426 0.574684286 0.611834139 1.062471326 0.718828808 0.719643318 0.781625681 0.731131373 0.694649028 1 18.63990909 -11.43409488 2.169305155 3.282345069 0.738990749 0.288320078 0.123488886 6879990.499 426488.491 77571865.15 0.03189908 3.68E-12 11.43409488 -2.54335432 WGQPPS(ph)PTPVPRPPDADPNTPS(ph)PKPLEGRPER ddPTM_HeLa_A486_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 WGQPPS(0.983)PT(0.017)PVPRPPDADPNT(0.186)PS(0.814)PKPLEGRPER 151.79 6.28E-10 1304800000 105610 96956 50459 55967 89446 107780 153210 133980 90533 165130 TRUE FALSE FALSE 98207.28437 89272.85345 69998.07614 130294.0044 78226.84863 94483.19943 114875.2375 103475.6788 98380.47333 123780.3732 0.793399485 0.721219779 0.565502223 1.052622488 0.631981037 0.763313254 0.928056965 0.835961923 0.794798649 1 16.91742305 -14 0.08597833 1.728131938 0.590134112 0.239143481 0.126884093 327.3429822 1.967209524 43.7810309 3.436370375 1.00E-14 14 -1.137997827 WGQPPS(ph)PTPVPRPPDADPNTPSPK ddPTM_HeLa_A486_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPK 24 1 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 WGQPPS(0.973)PT(0.027)PVPRPPDADPNTPSPK 131.2 1.75E-06 92803000 129760 133730 83511 46264 114410 142710 138610 144000 111630 151220 TRUE FALSE FALSE 120664.4941 123132.7478 115848.6957 107704.9301 100059.631 125103.8912 103928.3119 111214.3435 121306.1783 113353.5277 1.064497034 1.086271863 1.022012266 0.950168312 0.882721808 1.103661207 0.916851147 0.981128208 1.070157945 1 16.79046976 -4.951322963 4.197141732 0.983258388 1.074098498 0.244762793 0.061856216 0.279882278 10.50334341 0.016460364 0.035747705 1.12E-05 4.951322963 0.090840109 WGQPPS(ph)PTPVPRPPDADPNTPSPKPLEGRPER ddPTM_HeLa_A485_30min_R1 3 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 WGQPPS(0.5)PT(0.5)PVPRPPDADPNTPSPKPLEGRPER;WGQPPS(0.835)PT(0.164)PVPRPPDADPNTPSPKPLEGRPER;WGQPPS(0.403)PT(0.403)PVPRPPDADPNT(0.037)PS(0.157)PKPLEGRPER ;; 182.58 9.08E-21 6979410000 3087530 3153640 2564960 3713750 4062130 3561830 4699660 5004380 3218180 5381590 TRUE FALSE FALSE 3774340.397 3522430.765 3513845.441 3916622.759 3657690.074 3748321.911 3695539.248 3777047.958 3864039.207 4040058.654 0.934229109 0.871876145 0.869751096 0.969447004 0.905355686 0.927788983 0.914724157 0.934899288 0.956431463 1 21.94594481 -8.848580041 0.222891404 1.037492856 0.888110834 0.509148728 0.027158341 6.001447972 0.576468798 0.249635243 0.074983886 1.42E-09 8.848580041 -0.149382022 WGQPPS(ph)PTPVPRPPDADPNTPSPKPLEGRPER ddPTM_HeLa_A486_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 WGQPPS(0.807)PT(0.186)PVPRPPDADPNT(0.005)PS(0.001)PKPLEGRPER 110.32 0.00051025 1723400000 869840 826460 497460 383500 814070 895940 987670 980210 717090 1105000 TRUE FALSE FALSE 808868.7079 760968.2997 690089.8344 892807.381 711961.7497 785408.0321 740544.5195 757037.5808 779247.9386 828300.8077 0.976539803 0.918710078 0.833139154 1.077878197 0.859544918 0.948215944 0.894052635 0.913964557 0.940778919 1 19.65979527 -8.083828161 7.410071863 0.999999782 0.926618793 0.10333983 0.063528467 4.152839592 366.797425 0.057962295 0.015000437 8.24E-09 8.083828161 -0.073380988 WGQPPSPT(ph)PVPRPPDADPNTPSPKPLEGRPER ddPTM_HeLa_A485_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 WGQPPS(0.209)PT(0.777)PVPRPPDADPNT(0.011)PS(0.003)PKPLEGRPER 65.378 0.0062087 319630000 142130 140440 121080 174160 184900 161820 189350 228280 152090 233900 TRUE FALSE FALSE 173746.3282 156863.2363 165872.5306 183673.9198 166490.7068 170292.645 148893.8257 172293.9721 182613.0679 175593.0346 0.989483031 0.893334048 0.944641859 1.046020534 0.948162364 0.969814351 0.84794836 0.981211883 1.039978997 1 17.42187609 -7.524232552 24.52944994 1.016858196 0.948190969 0.242101286 0.050628508 56.02368584 1014922.392 0.034328711 0.013209712 2.99E-08 7.524232552 -0.068667227 WGQPPSPTPVPRPPDADPNT(ph)PSPKPLEGRPER ddPTM_HeLa_A486_30min_R1 2 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 WGQPPS(0.003)PT(0.022)PVPRPPDADPNT(0.838)PS(0.137)PKPLEGRPER;WGQPPS(0.107)PT(0.123)PVPRPPDADPNT(0.617)PS(0.153)PKPLEGRPER ; 173.81 3.47E-15 822720000 653540 686290 377298 318200 637890 674010 840550 789380 559220 891420 TRUE FALSE FALSE 607730.2209 631905.881 523397.89 740785.6809 557879.8881 590857.499 630235.4996 609655.406 607693.6399 668202.6298 0.909499894 0.945680027 0.783292173 1.108624312 0.834896277 0.884248988 0.943180214 0.912381034 0.909445148 1 19.34992614 -10.14056846 4.124845219 1.000020796 0.914883742 0.093039985 0.080001351 51049216.63 0.436857192 11764.84681 0.018193759 7.23E-11 10.14056846 -0.085137054 WGQPPSPTPVPRPPDADPNTPS(ph)PKPLEGRPER ddPTM_HeLa_A485_30min_R1 1 WGQPPSPTPVPRPPDADPNTPSPKPLEGRPER 32 3 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 WGQPPS(0.003)PT(0.104)PVPRPPDADPNT(0.365)PS(0.528)PKPLEGRPER 143.88 2.04E-09 558800000 291110 280020 226730 384010 392090 334770 434220 457370 288780 556380 TRUE FALSE FALSE 355866.4152 312765.9031 310606.862 404987.4939 353052.1429 352298.0395 341445.3497 345199.2904 346735.4972 417684.7054 0.851997716 0.748808609 0.74363954 0.969600966 0.845259925 0.843454488 0.817471517 0.826459015 0.830136925 1 18.67205479 -14 0.384773884 3.466566161 0.826416057 0.425879733 0.058876861 655.1143349 4.843225134 1350.475565 0.041543865 1.00E-14 14 -2.640150104 WGYWGS(ph)WGK ddPTM_HeLa_A486_30min_R1 1 WGYWGSWGK 9 0 E5RHP2;E5RHI8;E5RFK2;E5RGF9;Q9NRY5 E5RHP2 FAM114A2 Protein FAM114A2 1 0 WGYWGS(1)WGK 57.532 0.036778 20611000 43769 37981 24133 24471 38077 36962 38594 43670 19173 47442 TRUE FALSE FALSE 40701.01912 34971.24724 33477.9439 56969.7247 33301.02761 32402.00424 28937.37299 33727.29431 20834.93108 35562.2144 1.14450182 0.983382161 0.941390869 1.601973489 0.936416029 0.911135732 0.813711224 0.948402536 0.585872714 1 15.11805754 -5.982894579 24.99981116 0.854835012 1.154806732 0.36958967 0.195454963 278.3829697 406858.5115 0.060901994 0.069041781 1.04E-06 5.982894579 0.299971721 WHLNLNVRPK ddPTM_HeLa_A486_30min_R1 1 WHLNLNVRPK 10 1 Q9Y3P9;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 0 0 147.51 0.00022429 8809400 19685 14202 9625.8 8697.1 14730 13583 18584 15141 12445 22325 FALSE FALSE TRUE 18305.18315 13076.5818 13353.16755 20247.28833 12882.42605 11907.26756 13934.08664 11693.72483 13523.74262 16734.67469 1.093847565 0.781406394 0.797934098 1.209900324 0.76980439 0.711532658 0.832647595 0.698772163 0.80812701 1 14.03055289 WHPHS(ph)PNVRPSFQDDR ddPTM_HeLa_A486_30min_R1 2 WHPHSPNVRPSFQDDR 16 1 Q9H329-2 Q9H329-2 1 0 WHPHS(0.987)PNVRPS(0.013)FQDDR;WHPHS(0.953)PNVRPS(0.047)FQDDR ; 93.269 0.000524 240050000 83744 83998 72963 26683.5 126529 79763 83847 83474 74808 105021 TRUE FALSE FALSE 77873.97805 77341.69256 101216.2276 62120.53651 110658.553 69922.65203 62867.59376 64468.79242 81292.41767 78723.05803 0.989214342 0.982452848 1.285725303 0.789102178 1.405668882 0.888210567 0.798591865 0.818931505 1.032637955 1 16.26449864 -6.423897287 22.82503915 0.889408871 1.085383909 0.216136238 0.172136663 30.2010914 6956.182214 0.057567732 0.050769921 3.77E-07 6.423897287 0.195975037 WHQPPPS(ph)PLPLR ddPTM_HeLa_A485_30min_R1 2 WHQPPPSPLPLR 12 0 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 WHQPPPS(1)PLPLR;WHQPPPS(1)PLPLR ; 136.81 8.97E-06 906270000 801680 1023240 948370 853720 1102490 918560 970780 1043720 868450 926210 TRUE FALSE FALSE 980010.9502 1142899.017 1299211.528 900356.5619 992722.2245 966654.3812 763364.9225 787746.0335 1042739.949 695322.8926 1.409432885 1.643695367 1.868501011 1.294875476 1.427713995 1.390223724 1.097856738 1.132921182 1.499648523 1 19.40732356 -5.907277335 1.127828917 1.206293158 1.622011492 0.454971524 0.183514859 0.448829746 1.214006075 0.083606044 0.106499 1.24E-06 5.907277335 0.415718334 WHQPPPS(ph)PLPLR ddPTM_HeLa_A486_30min_R1 2 WHQPPPSPLPLR 12 0 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0;Q68DK7 MSL1 Male-specific lethal 1 homolog 1 0 WHQPPPS(1)PLPLR;WHQPPPS(1)PLPLR ; 92.575 0.0013866 937940000 490930 456650 377190 162788 484270 416000 449610 447890 374020 415940 TRUE FALSE FALSE 456518.3422 420463.3909 523248.0695 378978.6909 423528.341 364678.1496 337112.8225 345915.2244 406440.3547 311785.9167 1.4642045 1.34856441 1.678228687 1.215509331 1.358394713 1.16964279 1.081231719 1.109463917 1.30358792 1 18.25019624 -5.876309351 1.254838053 1.131070924 1.471987852 0.581072023 0.123951192 0.322681152 1.068861744 0.05076181 0.065071231 1.33E-06 5.876309351 0.340916928 WIGLDLSNGKPR ddPTM_HeLa_A485_30min_R1 1 WIGLDLSNGKPR 12 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 155.99 9.08E-06 49259000 61325 88522 80472 59462 95483 89273 103060 107390 74282 86534 FALSE FALSE TRUE 74966.53468 98873.87786 110241.9415 62710.25849 85976.37726 93947.19624 81040.38908 81052.43412 89189.71605 64962.66634 1.153994115 1.522010771 1.697004568 0.965327657 1.323473652 1.44617211 1.247491731 1.247677146 1.372938044 1 15.98732323 -13.09686023 0.198926201 8.77E-12 1.393917288 0.210404509 0.19118144 151.4115853 2.069655513 61.15945456 0.487324 8.00E-14 13.09686023 1.393917288 WIS(ph)ENQDSADVDPQEHSFTR ddPTM_HeLa_A486_30min_R1 1 WISENQDSADVDPQEHSFTR 20 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 WIS(1)ENQDSADVDPQEHSFTR 176.09 2.93E-14 121420000 14373 16274 10754 3404.3 17635 10466 11705 16336 15027 12991 TRUE FALSE FALSE 13365.52692 14984.38897 14918.2368 7925.382444 15423.05386 9174.81133 8776.285197 12616.64941 16329.55246 9737.969043 1.372516884 1.53875915 1.53196593 0.813864001 1.583806006 0.942168874 0.9012439 1.29561404 1.676895088 1 13.2494052 WIS(ph)IMTER ddPTM_HeLa_A485_30min_R1 2 WISIMTER 8 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 WIS(1)IMTER;WIS(1)IMTER ; 126.31 0.00060018 37493000 26960 35252 26025 41400 41393 35925 45344 54151 39182 59974 TRUE FALSE FALSE 32957.15899 39374.41475 35652.73049 43661.57717 37271.76758 37805.97745 35655.88397 40870.38234 47045.468 45023.58554 0.731997654 0.874528634 0.791867864 0.969749003 0.827827618 0.83969273 0.791937904 0.907754943 1.044907184 1 15.45839333 -7.589397973 3.931069037 1.020117753 0.838230493 0.613132404 0.059718546 0.149645021 4.542609963 0.044333821 0.015245482 2.57E-08 7.589397973 -0.18188726 WIS(ph)IMTER ddPTM_HeLa_A486_30min_R1 3 WISIMTER 8 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 WIS(1)IMTER;WIS(1)IMTER;WIS(1)IMTER ;; 123.86 0.00063108 52739000 50472 60858 65728 30707.8 97127 86208 66676 84979 79127 73772 TRUE FALSE FALSE 46934.17344 56035.39044 91179.64186 71489.31029 84944.42599 75572.53346 49992.95957 65631.13678 85985.79207 55299.01102 0.848734409 1.013316322 1.648847604 1.292777375 1.536093041 1.366616365 0.904047987 1.186841058 1.55492459 1 15.75496606 -9.665341083 13.76237033 1 1.264856941 0.081781875 0.262486542 0 0 0.264649883 0.064187025 2.16E-10 9.665341083 0.264856941 WISENQDSADVDPQEHS(ph)FTR ddPTM_HeLa_A485_30min_R1 1 WISENQDSADVDPQEHSFTR 20 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 WISENQDSADVDPQEHS(0.953)FT(0.047)R 141.36 3.87E-09 117890000 15693 17360 25792 18182 28482 17355 21997 21150 19647 21967 TRUE FALSE FALSE 19183.85371 19390.10099 35333.53409 19175.23662 25646.23207 18263.68096 17297.16125 15962.92934 23589.97269 16491.03117 1.163290125 1.175796758 2.142590947 1.162767593 1.555162428 1.107491749 1.048882939 0.967976421 1.43047287 1 14.00939399 -6.273960699 22.70512718 1.105083105 1.448887704 0.236935281 0.294857825 338.9898387 614692.503 0.103563468 0.092124354 5.32E-07 6.273960699 0.343804599 WISENQDSADVDPQEHS(ph)FTR ddPTM_HeLa_A486_30min_R1 1 WISENQDSADVDPQEHSFTR 20 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 WISENQDSADVDPQEHS(0.975)FT(0.025)R 172.8 7.03E-14 113840000 32837 39757 37658 10279 44941 32812 35537 38770 30690 35204 TRUE FALSE FALSE 30535.29587 36606.51053 52240.18612 23930.03147 39304.08072 28763.98905 26645.26673 29942.91734 33350.23391 26388.68926 1.157135755 1.387204577 1.979643081 0.906829105 1.489429063 1.090012041 1.009723009 1.134687557 1.263807898 1 14.68763207 -5.291730486 24.99992565 1.141971592 1.495915897 0.337665797 0.243278372 808.2165516 667037.5219 0.068311114 0.101336611 5.11E-06 5.291730486 0.353944305 WISIMTER ddPTM_HeLa_A485_30min_R1 6 WISIMTER 8 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;;;; ;;;;; 231.97 5.43E-21 1040012000 656548 916541 729490 642550 857815 933406 1038482 1202130 865691 1125344 FALSE FALSE TRUE 802594.8375 1023722.497 999358.7076 677650.8795 772407.9266 982277.6948 816601.8371 907305.7326 1039427.243 844816.4512 0.950022737 1.211769131 1.18292998 0.80212794 0.914290821 1.162711372 0.96660267 1.073967879 1.230358667 1 19.6882784 -9.015756813 11.06789668 1.000003531 1.052904217 0.014191258 0.136481172 0 0 0.136468803 0.033098546 9.64E-10 9.015756813 0.052900686 WISIMTER ddPTM_HeLa_A486_30min_R1 6 WISIMTER 8 0 P07355;H0YN42;P07355-2;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;;;; ;;;;; 217.64 1.27E-14 1100270000 684098 863769 817221 359135 1094930 810016 883583 963250 824021 970700 FALSE FALSE TRUE 636146.2629 795320.7986 1133670.857 836084.4297 957593.6696 710084.4616 662501.1878 743939.0026 895447.8037 727630.4018 0.874271143 1.093028544 1.558031185 1.149050985 1.316044062 0.975886191 0.910491351 1.022413303 1.230635501 1 19.4728463 -6.273279422 24.51930018 1.021948973 1.209521584 0.182351481 0.179165511 1013.943314 2099747.173 0.065732988 0.058452157 5.33E-07 6.273279422 0.18757261 WKEPGSGGPQNLS(ph)GPGGR ddPTM_HeLa_A485_30min_R1 4 WKEPGSGGPQNLSGPGGR 18 1 Q9H0W8-2;Q9H0W8;M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7 Q9H0W8-2 SMG9 Protein SMG9 1 0 WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR ;;; 255.99 5.21E-58 4490670000 1191560 1474950 1135830 1240290 1638310 1423440 1888510 2135280 1230600 1823590 TRUE FALSE FALSE 1456618.411 1647432.572 1556020.783 1308043.902 1475194.104 1497969.117 1485014.411 1611599.232 1477570.132 1369002.574 1.063999761 1.203381647 1.1366091 0.955472201 1.07756854 1.094204749 1.084741869 1.177206868 1.07930413 1 20.38469373 -5.040207984 24.9992731 1.074280706 1.142767077 0.182880597 0.063755583 838.0354499 521046.8483 0.017609281 0.030505896 9.12E-06 5.040207984 0.068486372 WKEPGSGGPQNLS(ph)GPGGR ddPTM_HeLa_A486_30min_R1 4 WKEPGSGGPQNLSGPGGR 18 1 Q9H0W8-2;Q9H0W8;M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7 Q9H0W8-2 SMG9 Protein SMG9 1 0 WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR;WKEPGSGGPQNLS(1)GPGGR ;;; 249.85 2.65E-46 3320090000 2086120 1947910 1400700 690231 1913790 1922010 2154890 2218650 1701460 2546260 TRUE FALSE FALSE 1939893.761 1793550.517 1943088.552 1606892.65 1673744.613 1684891.948 1615713.73 1713511.828 1848943.923 1908659.923 1.016364276 0.939690982 1.018038116 0.841895736 0.876921338 0.882761737 0.846517345 0.897756487 0.968713127 1 20.86412864 -5.253832036 24.96100717 0.893652259 0.986197113 0.380219235 0.051328859 567.1895645 1861042.131 0.013614963 0.023042705 5.57E-06 5.253832036 0.092544854 WKGYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_HeLa_A485_30min_R1 1 WKGYDSEDDTWEPEQHLVNCEEYIHDFNR 29 1 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 WKGYDS(1)EDDTWEPEQHLVNCEEYIHDFNR 243.15 2.32E-50 302210000 27761 41477 45797 29648 51210 35622 37126 41086 44750 36910 TRUE FALSE FALSE 33936.33868 46327.37435 62739.21607 31267.59517 46111.35259 37487.11284 29193.72681 31009.59408 53730.91453 27709.01628 1.224739931 1.671924181 2.264216652 1.128426749 1.664128099 1.352885013 1.053582217 1.119115661 1.939113031 1 14.75806787 -5.843450999 1.468041554 1.296702497 1.668827505 0.126520121 0.377250987 0.808493872 3.625358104 0.146726645 0.187792436 1.43E-06 5.843450999 0.372125007 WKGYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_HeLa_A486_30min_R1 3 WKGYDSEDDTWEPEQHLVNCEEYIHDFNR 29 1 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 WKGYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;WKGYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;WKGY(0.006)DS(0.93)EDDT(0.064)WEPEQHLVNCEEYIHDFNR ;; 308.03 7.51E-109 862240000 121817 136990 111357 60812.9 144131 134434 161535 158250 133104 144337 TRUE FALSE FALSE 113278.2574 126134.4135 154477.4126 141575.5045 126052.746 117848.8999 121117.2345 122219.9296 144641.5619 108194.0757 1.046991313 1.165816267 1.427780695 1.308532871 1.165061443 1.089236163 1.119444236 1.129636061 1.336871367 1 16.72326198 -5.929507981 7.584480776 1.140525891 1.245364065 0.13745775 0.12018753 0.504131571 46.4066165 0.039154737 0.044443543 1.18E-06 5.929507981 0.104838174 WKGYT(ph)SDDDTWEPEIHLEDCK ddPTM_HeLa_A485_30min_R1 4 WKGYTSDDDTWEPEIHLEDCK 21 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 WKGY(0.023)T(0.485)S(0.485)DDDT(0.007)WEPEIHLEDCK;WKGYT(0.614)S(0.386)DDDTWEPEIHLEDCK;WKGYT(0.755)S(0.245)DDDTWEPEIHLEDCK;WKGYT(0.5)S(0.5)DDDTWEPEIHLEDCK ;;; 217.93 2.06E-35 1195380000 934039 631837 461329 1343799 893251 897765 1535042 1360950 659694 1925000 TRUE FALSE FALSE 1141812.753 705724.8409 631993.7946 1417207.337 804315.794 944770.5872 1207067.737 1027174.879 792088.5347 1445132.927 0.790109153 0.48834597 0.437325718 0.98067611 0.556568727 0.653760335 0.835264157 0.710782281 0.548107735 1 20.46277077 -14 0.265966516 3.195692684 0.642392414 0.269355371 0.161027111 281.5984811 2.753157992 339.4236536 0.206509684 1.00E-14 14 -2.55330027 WKGYT(ph)SDDDTWEPEIHLEDCK ddPTM_HeLa_A486_30min_R1 2 WKGYTSDDDTWEPEIHLEDCK 21 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 WKGYT(0.636)S(0.364)DDDTWEPEIHLEDCK;WKGYT(0.721)S(0.279)DDDTWEPEIHLEDCK ; 214.02 2.05E-27 681940000 573450 669100 297201 415630 500510 809040 1056330 961210 590160 1197310 TRUE FALSE FALSE 533254.1163 616078.0792 412285.1865 967607.6448 437731.3687 709228.8705 792025.0613 742363.4661 641315.544 897495.7828 0.594157796 0.686441197 0.45937284 1.078119433 0.487725265 0.790230867 0.882483324 0.82714981 0.714561067 1 19.77554563 -3.939251299 0.084991977 1.219642604 9.68E-16 0.275955462 0.165452603 119.9581582 1.476578456 5.179343902 19.49651855 0.000115013 3.939251299 -1.219642604 WKGYTS(ph)DDDTWEPEIHLEDCK ddPTM_HeLa_A486_30min_R1 1 WKGYTSDDDTWEPEIHLEDCK 21 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 WKGYT(0.435)S(0.565)DDDTWEPEIHLEDCK 119.28 1.54E-05 432640000 187100 225510 98492 141210 186920 262160 366060 289690 179420 370360 TRUE FALSE FALSE 173985.2562 207639.7663 136630.7401 328744.0164 163474.7506 229817.3646 274467.9162 223733.9109 194972.2701 277619.4454 0.626704142 0.747929476 0.492151189 1.184153422 0.588844742 0.827814364 0.988648024 0.80590144 0.702300481 1 18.0827491 -5.217490111 24.99998141 0.854342037 0.634828446 0.314654307 0.166703457 613.8081767 349156.1293 0.043508672 0.075358721 6.06E-06 5.217490111 -0.219513591 WKS(ph)LDEMEK ddPTM_HeLa_A485_30min_R1 1 WKSLDEMEK 9 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 WKS(1)LDEMEK 106.32 0.00054228 74246000 81937 68361 44247 145480 88111 89056 159990 141380 64072 187230 TRUE FALSE FALSE 100163.603 76355.22429 60615.80657 153427.204 79338.35946 93718.83445 125806.8295 106706.3333 76930.6627 140557.0067 0.712619067 0.543233141 0.43125425 1.091565676 0.564456809 0.666767432 0.895059111 0.759167656 0.547327127 1 17.10079585 -14 0.139407413 1.972615763 0.590466655 0.192654177 0.184174712 239.7905374 2.049156827 65.92739553 1.158834414 1.00E-14 14 -1.382149108 WKSEEEVES(ph)DDEYLALPAR ddPTM_HeLa_A486_30min_R1 2 WKSEEEVESDDEYLALPAR 19 1 Q5HYA6;Q76N32-2;Q76N32 Q5HYA6 DKFZp686H16130;CEP68 Centrosomal protein of 68 kDa 1 0 WKSEEEVES(1)DDEYLALPAR;WKS(0.003)EEEVES(0.987)DDEY(0.011)LALPAR ; 124.14 2.91E-06 221983000 99398 107316 106119 47976 143638 131624 167040 167985 106369 166210 TRUE FALSE FALSE 92430.71349 98811.88932 147211.1188 111690.5526 125621.5827 115385.5691 125244.8252 129738.4826 115589.1506 124589.9342 0.741879463 0.79309689 1.181565106 0.896465299 1.008280352 0.926122723 1.005256372 1.041323952 0.927756735 1 16.92682799 -4.595598455 9.883426346 0.994109023 0.754632088 0.604427173 0.075139582 0.192071527 24.37156918 0.017919415 0.047542299 2.54E-05 4.595598455 -0.239476935 WLAES(ph)PVGLPPEEEDKLTR ddPTM_HeLa_A485_30min_R1 4 WLAESPVGLPPEEEDKLTR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR ;;; 181.69 2.23E-18 821120000 462632 463584 402026 626610 608370 586380 798430 790510 461956 876060 TRUE FALSE FALSE 565542.8923 517796.1162 550752.1471 660840.1176 547798.5467 617081.9501 627838.9079 596636.183 554666.3319 657674.3647 0.859913238 0.78731382 0.837423772 1.004813557 0.832932795 0.938278855 0.95463491 0.907190876 0.843375326 1 19.32701391 -5.029653086 23.47037814 0.919959786 0.820802335 0.387920964 0.056033576 303.5721613 240277.4005 0.014524551 0.025224821 9.34E-06 5.029653086 -0.09915745 WLAES(ph)PVGLPPEEEDKLTR ddPTM_HeLa_A486_30min_R1 4 WLAESPVGLPPEEEDKLTR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR ;;; 175.61 2.10E-13 763240000 808460 693470 400276 335227 686820 787100 949540 879980 601717 1097890 TRUE FALSE FALSE 751791.1289 638516.9116 555273.587 780425.3974 600672.6313 689995.6046 711955.0488 679627.7638 653874.314 822971.1979 0.913508432 0.775867871 0.674718129 0.9483022 0.729882932 0.838420113 0.865103239 0.825822053 0.794528795 1 19.65048242 -13.99999991 0.367812485 3.383532785 0.811587813 0.328777515 0.077324051 607.7794729 4.74339754 1150.130646 0.053711239 1.00E-14 13.99999991 -2.571944972 WLDDLLAS(ph)PPPSGGGAR ddPTM_HeLa_A485_30min_R1 7 WLDDLLASPPPSGGGAR 17 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 WLDDLLAS(0.98)PPPS(0.02)GGGAR;WLDDLLAS(0.999)PPPS(0.001)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR ;;;;;; 265.77 6.99E-52 2290698000 1360898 1928900 1884386 1422524 2244880 1748775 2167460 2314300 1749280 1966797 TRUE FALSE FALSE 1663625.065 2154468.076 2581498.797 1500232.884 2021371.865 1840338.155 1704364.464 1746714.296 2100344.451 1476510.704 1.126727399 1.45916184 1.748377977 1.016066379 1.369019445 1.246410304 1.154319071 1.183001445 1.422505401 1 20.49376038 -5.278274189 24.99998253 1.213613197 1.446196403 0.263139162 0.187486868 1120.339627 1663721.25 0.052138296 0.077568308 5.27E-06 5.278274189 0.232583205 WLDDLLAS(ph)PPPSGGGAR ddPTM_HeLa_A486_30min_R1 8 WLDDLLASPPPSGGGAR 17 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 WLDDLLAS(0.999)PPPS(0.001)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(0.971)PPPS(0.029)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(0.999)PPPS(0.001)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(1)PPPSGGGAR ;;;;;;; 241.08 1.74E-43 2158803000 1533946 1743639 1571722 587568 2015735 1565095 1813047 1863117 1556515 1758635 TRUE FALSE FALSE 1426424.307 1605466.695 2180334.851 1367887.998 1762902.72 1372009.492 1359403.464 1438925.931 1691434.973 1318261.349 1.082049707 1.217866773 1.653947339 1.037645531 1.337293793 1.040771993 1.031209377 1.091533125 1.283080153 1 20.33020499 -6.264282886 24.860733 1.0914079 1.271992728 0.208092206 0.171860896 397.1181829 3471980.478 0.059509597 0.054823643 5.44E-07 6.264282886 0.180584828 WLDES(ph)DAEMELR ddPTM_HeLa_A485_30min_R1 13 WLDESDAEMELR 12 0 H3BPZ1;H3BS72;Q9P035 H3BPZ1 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 0 WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR ;;;;;;;;;;;; 288.2 1.00E-41 12237124000 2978775 2786265 1730643 2381579 1655212 2192600 2225036 3026951 1825732 4892628 TRUE FALSE FALSE 3641393.222 3112094.454 2370879.864 2511678.63 1490413.281 2307401.146 1749638.882 2284586.521 2192139.666 3672985.882 0.991398644 0.84729279 0.645491145 0.683824744 0.405777024 0.628208553 0.476353283 0.621997088 0.596827686 1 21.80852192 -4.588556108 1.664124805 0.598411637 1.026144966 0.3794419 0.148894428 0.484924334 2.064970773 0.039676617 0.274289979 2.58E-05 4.588556108 0.427733329 WLDES(ph)DAEMELR ddPTM_HeLa_A486_30min_R1 15 WLDESDAEMELR 12 0 H3BPZ1;H3BS72;Q9P035 H3BPZ1 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 0 WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR ;;;;;;;;;;;;;; 279.75 7.74E-41 10286791000 2517825 3130940 2839268 776942.7 3208874 2734222 2620556 2239328 3184529 3059033 TRUE FALSE FALSE 2341338.47 2882832.912 3938708.608 1808761.87 2806387.101 2396901.489 1964865.171 1729481.899 3460566.538 2293031.226 1.02106698 1.257214851 1.717686425 0.788808216 1.223876531 1.045298233 0.856885484 0.754233906 1.509166774 1 21.12882457 -5.282241823 24.99394785 1.017295918 1.324512082 0.223313136 0.261539594 1169.634421 1405302.583 0.072999313 0.108399799 5.22E-06 5.282241823 0.307216164 WLIS(ph)PVK ddPTM_HeLa_A485_30min_R1 4 WLISPVK 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 WLIS(1)PVK;WLIS(1)PVK;WLIS(1)PVK;WLIS(1)PVK ;;; 138.4 0.0015497 2626558900 2983595 2872985 2281331 3742576 3734162 3377800 4715436 4805538 2523126 4752071 TRUE FALSE FALSE 3647285.414 3208955.604 3125290.271 3947023.45 3362375.72 3554656.385 3707944.577 3626972.271 3029494.245 3567467.155 1.02237393 0.899505297 0.876052991 1.106393774 0.942510631 0.996409001 1.039377355 1.016679934 0.849200319 1 21.76646872 -5.204989723 24.99949505 0.993612947 0.929330264 0.129124355 0.071586465 573.6524805 254048.3272 0.019049042 0.03299389 6.24E-06 5.204989723 -0.064282683 WLIS(ph)PVK ddPTM_HeLa_A486_30min_R1 4 WLISPVK 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 WLIS(1)PVK;WLIS(1)PVK;WLIS(1)PVK;WLIS(1)PVK ;;; 115.71 0.0024789 2291086000 2315642 2245021 1406946 1045785 2214719 2296023 2916290 2746390 1761824 2983300 TRUE FALSE FALSE 2153327.454 2067117.36 1951753.171 2434640.331 1936928.292 2012763.027 2186603.397 2121096.95 1914540.323 2236262.262 0.962913649 0.924362672 0.87277472 1.088709662 0.866145409 0.900056787 0.97779381 0.948500981 0.856134075 1 21.09265796 WLITLNK ddPTM_HeLa_A485_30min_R1 2 WLITLNK 7 0 H0Y8J7;D6RBW1;P06730;P06730-3;P06730-2 H0Y8J7 EIF4E Eukaryotic translation initiation factor 4E 0 0 ; ; 132.29 0.0060205 44958000 56030 66033 61086 56582 86636 71476 83701 95647 57062 82760 FALSE FALSE TRUE 68493.6802 73754.98494 83684.2534 59672.93139 78010.21564 75218.37284 65817.59758 72189.42328 68513.82 62129.45508 1.10243491 1.187117847 1.346933645 0.960461206 1.255607594 1.210671697 1.059362222 1.161919466 1.102759068 1 15.92298978 -8.456817949 0.440147241 0.98702934 1.181162868 0.204759984 0.099702111 3.283613815 1.243430064 0.188008764 0.063531145 3.49E-09 8.456817949 0.194133528 WLKS(ph)PTTPIDPEK ddPTM_HeLa_A486_30min_R1 1 WLKSPTTPIDPEK 13 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 WLKS(0.949)PT(0.048)T(0.003)PIDPEK 75.018 0.0039604 352930000 337270 311420 138340 157030 224120 356380 375500 411090 236060 451760 TRUE FALSE FALSE 313629.1147 286741.945 191908.9529 365573.7759 196008.7798 312413.459 281545.9284 317493.781 256521.8709 338636.3555 0.926153112 0.846754757 0.566711015 1.079546746 0.578817887 0.922563257 0.831410815 0.93756555 0.757514268 1 18.36937734 WLLLTGISAQQNR ddPTM_HeLa_A485_30min_R1 2 WLLLTGISAQQNR 13 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 288.17 8.40E-63 43289000 48532 54057 61661 55588 81111 47825 57690 55508 49185 81269 FALSE FALSE TRUE 59327.77597 60378.49592 84471.96983 58624.63168 73035.30404 50329.04305 45364.06022 41894.57597 59055.97835 61010.13395 0.972424942 0.989646998 1.384556374 0.960899901 1.197101192 0.824929234 0.743549592 0.686682249 0.967969984 1 15.89676128 -6.275131949 23.48178004 0.818726504 1.102721741 0.426296772 0.147130644 315.3905131 540869.8074 0.050937625 0.045202603 5.31E-07 6.275131949 0.283995237 WLLLTGISAQQNR ddPTM_HeLa_A486_30min_R1 2 WLLLTGISAQQNR 13 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 285.28 4.36E-52 55261000 61844 69213 56524 25611 73576 61325 72496 69565 59643 68931 FALSE FALSE TRUE 57509.05496 63728.30981 78411.60657 59623.70231 64347.41201 53759.34501 54356.73402 53726.56809 64812.90326 51670.22893 1.113001745 1.233366121 1.517539368 1.153927581 1.245347918 1.040431717 1.051993288 1.039797369 1.254356805 1 15.65704566 -6.086387337 2.432133641 1.078338925 1.271992257 0.338350945 0.119938012 0.348635397 4.062135668 0.044049968 0.045510193 8.20E-07 6.086387337 0.193653332 WLLYLVK ddPTM_HeLa_A485_30min_R1 1 WLLYLVK 7 0 P23229-7;P23229-4;P23229-2;P23229-5;P23229-3;P23229-9;P23229-6;P23229 P23229-7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 0 0 126.05 0.0083111 4029100 7189.7 7246.3 6017.9 6898.7 5445.5 6768.4 7814.9 8154.7 4947 13320 FALSE FALSE TRUE 8789.023961 8093.691751 8244.171636 7275.558513 4903.3269 7122.782958 6145.182773 6154.747039 5939.817523 9999.569136 0.878940266 0.809404049 0.824452686 0.7275872 0.490353818 0.712308987 0.614544756 0.615501224 0.594007346 1 13.28765022 -5.403471181 3.787404069 0.648436197 0.834483615 0.240223074 0.127178827 0.284452859 7.204167786 0.034436248 0.05250179 3.95E-06 5.403471181 0.186047418 WLNS(ph)PNTYMK ddPTM_HeLa_A485_30min_R1 2 WLNSPNTYMK 10 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 WLNS(1)PNTYMK;WLNS(0.985)PNT(0.015)YMK ; 154.09 2.52E-06 492590000 876260 933450 699330 923550 1240850 990910 1174000 1295430 823530 1227880 TRUE FALSE FALSE 1071181.014 1042608.858 958041.2685 974001.1979 1117306.617 1042792.515 923165.3093 977723.7613 988804.9171 921792.1135 1.162063548 1.131067236 1.039324653 1.056638676 1.2121026 1.131266476 1.001489702 1.060677074 1.072698391 1 19.8140819 -6.749956336 24.9991649 1.038772713 1.119841953 0.421342312 0.050549988 253.3187561 551488.3211 0.020934407 0.016072718 1.78E-07 6.749956336 0.08106924 WLNS(ph)PNTYMK ddPTM_HeLa_A486_30min_R1 2 WLNSPNTYMK 10 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 WLNS(0.7)PNT(0.221)Y(0.079)MK;WLNS(1)PNTYMK ; 183.37 1.31E-09 512220000 917800 899560 587200 343620 997980 951440 992950 1020680 665260 1120450 TRUE FALSE FALSE 853466.9595 828275.5895 814579.5658 799964.7256 872804.0426 834061.0063 744503.4076 788293.4453 722925.2724 839882.0271 1.01617481 0.986180872 0.969873791 0.952472728 1.039198381 0.99306924 0.886438075 0.938576395 0.860746211 1 19.67982717 -6.747581261 24.98278019 0.91632154 0.991756164 0.425236737 0.040473292 206.2059872 371738.6724 0.014892125 0.011475491 1.79E-07 6.747581261 0.075434624 WLNSGRGDEASEEGQNGSS(ph)PK ddPTM_HeLa_A485_30min_R1 6 WLNSGRGDEASEEGQNGSSPK 21 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 WLNSGRGDEASEEGQNGS(0.051)S(0.949)PK;WLNSGRGDEASEEGQNGS(0.167)S(0.833)PK;WLNSGRGDEASEEGQNGS(0.213)S(0.787)PK;WLNSGRGDEASEEGQNGS(0.16)S(0.84)PK;WLNSGRGDEASEEGQNGS(0.194)S(0.806)PK;WLNSGRGDEASEEGQNGS(0.171)S(0.829)PK ;;;;; 239.21 1.22E-46 5930550000 1097110 1534870 939440 1523810 1884240 1782650 3142550 3440270 1152425 2528260 TRUE FALSE FALSE 1341158.335 1714359.695 1286977.949 1607051.882 1696638.45 1875986.797 2471118.52 2596538.388 1383706.127 1898011.311 0.706612404 0.903239978 0.678066533 0.846703006 0.893903234 0.988396005 1.301951419 1.36803104 0.729029442 1 20.85605716 -6.233424791 2.077082104 1.12772013 0.788499441 0.386434687 0.175135344 0.317666825 2.692213359 0.068746303 0.064413777 5.84E-07 6.233424791 -0.339220689 WLNSGRGDEASEEGQNGSS(ph)PK ddPTM_HeLa_A486_30min_R1 7 WLNSGRGDEASEEGQNGSSPK 21 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 WLNSGRGDEASEEGQNGS(0.163)S(0.837)PK;WLNSGRGDEASEEGQNGS(0.058)S(0.942)PK;WLNSGRGDEASEEGQNGS(0.042)S(0.958)PK;WLNSGRGDEASEEGQNGS(0.008)S(0.992)PK;WLNSGRGDEASEEGQNGS(0.279)S(0.721)PK;WLNSGRGDEASEEGQNGS(0.249)S(0.751)PK;WLNSGRGDEASEEGQNGS(0.146)S(0.854)PK ;;;;;; 175 1.91E-14 5628670000 1248313 932331 569971 902433 1131401 1074218 1843760 1718537 728379 2382950 TRUE FALSE FALSE 1160812.705 858449.6961 790679.0356 2100909.63 989490.1367 941691.905 1382431.747 1327263.64 791515.4782 1786243.81 0.649862409 0.480589319 0.442649 1.176160622 0.553950212 0.527191137 0.773932281 0.7430473 0.443117269 1 20.76849758 -11.10433319 2.545099601 1.646843676 0.64908878 0.206170675 0.209657705 35733047.76 8943292.68 134105686.7 0.052110028 7.86E-12 11.10433319 -0.997754896 WLPAGDALLQMITIHLPSPVTAQK ddPTM_HeLa_A485_30min_R1 2 WLPAGDALLQMITIHLPSPVTAQK 24 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 246.92 2.43E-51 79568000 90789 112824 100718 92414 128222 109815 148174 157270 78960 140837 FALSE FALSE TRUE 110984.6998 126017.7854 137977.7794 97462.34282 115455.7675 115564.7436 116515.4144 118699.2859 94806.54774 105728.9278 1.049709877 1.191895047 1.305014458 0.921813404 1.091997903 1.093028616 1.102020202 1.122675585 0.896694497 1 16.69001063 -6.77429862 0.384400798 0.978299879 1.161615902 0.195589329 0.102908026 2.297208987 0.823493788 0.122331933 0.148116715 1.68E-07 6.77429862 0.183316023 WLPAGDALLQMITIHLPSPVTAQK ddPTM_HeLa_A486_30min_R1 2 WLPAGDALLQMITIHLPSPVTAQK 24 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 216.38 1.18E-42 75110000 65194 72268 56163 23421.5 82335 66691 89101 79092 60665 85691 FALSE FALSE TRUE 60624.23726 66541.22048 77910.8177 54526.43566 72007.77656 58463.34248 66806.98739 61084.47817 65923.49105 64233.41585 0.943811511 1.035928412 1.212932812 0.848879589 1.121032964 0.910170224 1.04006593 0.950976643 1.026311464 1 15.9710364 -5.267331926 24.99789588 0.988106517 1.061394659 0.130881218 0.092868335 1021.505341 4333523.898 0.024810771 0.037966628 5.40E-06 5.267331926 0.073288142 WLPLGLGLNHLGK ddPTM_HeLa_A486_30min_R1 1 WLPLGLGLNHLGK 13 0 Q13200;Q13200-2;Q13200-3;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 91.937 0.026163 0 7551.1 8989.3 8217.3 4298.2 10496 9439.9 9439.1 9810 7458.4 9291.7 FALSE FALSE TRUE 7021.806884 8276.95513 11399.25863 10006.42682 9179.493809 8275.301116 7077.337343 7576.477151 8104.900117 6964.997841 1.008156362 1.18836435 1.636649269 1.436673355 1.317946397 1.188126874 1.016129151 1.08779318 1.16366154 1 12.76590719 -6.437293377 3.01392665 1.075146339 1.335057779 0.356261956 0.157469692 0.32345414 5.699283864 0.06703321 0.056144353 3.65E-07 6.437293377 0.259911439 WLPSS(ph)PSGVAK ddPTM_HeLa_A485_30min_R1 3 WLPSSPSGVAK 11 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 0 WLPS(0.003)S(0.721)PS(0.277)GVAK;WLPS(0.001)S(0.79)PS(0.209)GVAK;WLPS(0.241)S(0.697)PS(0.062)GVAK ;; 175.48 1.28E-08 636706000 1085520 1199150 916370 1121630 1419070 1236620 1566120 1787650 1155950 1697470 TRUE FALSE FALSE 1326990.179 1339380.161 1255373.396 1182901.807 1277782.408 1301367.511 1231505.668 1349226.035 1387938.562 1274321.969 1.041330379 1.051053183 0.985130467 0.928259762 1.002715514 1.021223477 0.96640072 1.058779545 1.089158467 1 20.2812984 -7.282606117 23.73749297 1.055476779 0.999104727 0.247957037 0.03935836 593.9311315 666059.1104 0.022608834 0.010882488 5.22E-08 7.282606117 -0.056372052 WLPSS(ph)PSGVAK ddPTM_HeLa_A486_30min_R1 3 WLPSSPSGVAK 11 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 0 WLPS(0.224)S(0.774)PS(0.001)GVAK;WLPS(0.171)S(0.706)PS(0.123)GVAK;WLPS(0.154)S(0.629)PS(0.216)GVAK ;; 147.58 8.03E-07 782657000 1665530 1543030 1019000 567832 1477120 1521690 1864560 1666600 1342940 1941080 TRUE FALSE FALSE 1548784.948 1420754.683 1413584.09 1321941.593 1291845.836 1333959.359 1398027.367 1287151.562 1459347.12 1455020.934 1.064441694 0.976449651 0.971521479 0.908537851 0.88785378 0.916797366 0.960829727 0.884627521 1.002973281 1 20.47260848 -4.22553114 1.363820264 0.93217378 1.125922269 0.456269343 0.04045008 1.157968015 1.807443411 0.011358155 0.317120756 5.95E-05 4.22553114 0.193748489 WLREAEEES(ph)DHN ddPTM_HeLa_A485_30min_R1 4 WLREAEEESDHN 12 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 WLREAEEES(1)DHN;WLREAEEES(1)DHN;WLREAEEES(1)DHN;WLREAEEES(1)DHN ;;; 117.7 0.00030291 2386430000 324689 1173740 928030 306886 1626380 1759310 2153320 5464870 790818 446523 TRUE FALSE FALSE 396914.9479 1310998.683 1271346.916 323650.4051 1464451.897 1851424.751 1693245.591 4124602.064 949527.9188 335213.0337 1.184067766 3.910941851 3.792653589 0.965506626 4.368720035 5.523128771 5.05125225 12.30442032 2.83261038 1 18.35471872 -6.12376795 2.634003939 6.087498276 2.6585228 0.151722064 2.912355779 0.436490671 5.898100641 1.017389543 1.027794299 7.52E-07 6.12376795 -3.428975475 WLTS(ph)PVR ddPTM_HeLa_A485_30min_R1 7 WLTSPVR 7 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 WLT(0.01)S(0.99)PVR;WLT(0.016)S(0.984)PVR;WLT(0.023)S(0.977)PVR;WLT(0.009)S(0.991)PVR;WLT(0.127)S(0.873)PVR;WLT(0.266)S(0.734)PVR;WLT(0.025)S(0.975)PVR ;;;;;; 138.26 0.0015518 2635630000 3585270 4716100 4889550 3459550 5797160 4359670 5067220 5510530 4486310 5102100 TRUE FALSE FALSE 4382800.942 5267606.87 6698398.016 3648536.456 5219974.395 4587935.58 3984567.052 4159063.877 5386671.266 3830240.367 1.144262637 1.375267964 1.748819232 0.952560703 1.362832067 1.197819233 1.040291645 1.085849315 1.406353322 1 21.8690035 -5.279587587 24.99184229 1.159329646 1.418031819 0.292505014 0.194376657 1051.233066 1447647.247 0.054424883 0.080906149 5.25E-06 5.279587587 0.258702173 WLTS(ph)PVR ddPTM_HeLa_A486_30min_R1 6 WLTSPVR 7 0 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 WLT(0.016)S(0.984)PVR;WLT(0.019)S(0.981)PVR;WLT(0.033)S(0.967)PVR;WLT(0.009)S(0.991)PVR;WLT(0.028)S(0.972)PVR;WLT(0.137)S(0.863)PVR ;;;;; 126.82 0.0017332 2710460000 4207700 5166460 4889350 1720680 5949530 4801390 5416640 5634710 4490370 4613220 TRUE FALSE FALSE 3912761.959 4757050.894 6782637.261 4005829.998 5203284.47 4209043.319 4061339.381 4351809.538 4879598.887 3458039.685 1.131497124 1.375649595 1.961411053 1.15841065 1.504691948 1.217176118 1.174462918 1.258461422 1.411088169 1 21.72152299 -6.271840423 23.18259659 1.226030601 1.438358466 0.17199957 0.233147324 514.1528915 1145975.373 0.082143764 0.073363803 5.35E-07 6.271840423 0.212327865 WLTS(ph)PVRR ddPTM_HeLa_A485_30min_R1 5 WLTSPVRR 8 1 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 WLT(0.004)S(0.996)PVRR;WLT(0.009)S(0.991)PVRR;WLT(0.001)S(0.999)PVRR;WLT(0.003)S(0.997)PVRR;WLT(0.005)S(0.995)PVRR ;;;; 135.43 0.00028484 2253850000 395440 522535 522949 385256 605264 488058 574844 670267 486070 485423 TRUE FALSE FALSE 483404.2637 583640.9228 716409.5968 406301.5598 545001.7909 513611.9622 452023.8834 505882.9673 583619.7905 364415.9796 1.326517746 1.601578842 1.965911587 1.114938923 1.495548553 1.409411197 1.240406318 1.388201933 1.601520853 1 18.4752267 -5.275306038 24.98621452 1.345152153 1.628360373 0.290373991 0.219816624 1032.10745 1859743.497 0.060815091 0.090726817 5.31E-06 5.275306038 0.283208221 WLTS(ph)PVRR ddPTM_HeLa_A486_30min_R1 5 WLTSPVRR 8 1 E7EPJ7;O75962-4;O75962;O75962-5;O75962-2;E7EWP2;A0A1W2PRD7;C9J1B4;H7BXZ5;O60229-5;O60229-6;O60229-4;O60229 E7EPJ7 TRIO;KALRN Triple functional domain protein;Kalirin 1 0 WLT(0.059)S(0.941)PVRR;WLT(0.143)S(0.857)PVRR;WLT(0.023)S(0.977)PVRR;WLT(0.004)S(0.996)PVRR;WLT(0.003)S(0.997)PVRR ;;;; 109.88 0.00072365 2196460000 466890 550234 523212 202359 644267 440700 587328 572955 455739 506204 TRUE FALSE FALSE 434163.422 506631.4539 725813.6985 471101.9787 563457.0253 386330.9147 440372.3223 442505.654 495242.8235 379447.2236 1.14419976 1.335182925 1.912818578 1.241548098 1.484941753 1.018141366 1.160562774 1.166184983 1.305169185 1 18.53353971 -6.252258339 24.74717775 1.142307667 1.435867952 0.33460335 0.206386573 719.9417842 1940579.271 0.069779067 0.068828834 5.59E-07 6.252258339 0.293560285 WMGIAFR ddPTM_HeLa_A485_30min_R1 2 WMGIAFR 7 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 0 ; ; 119.23 0.010843 41575000 19587.3 28531 27925 21925 32724 27225 32513 34730 21862.3 35474 FALSE FALSE TRUE 23944.42731 31867.45226 38255.61956 23122.70723 29465.88366 28650.4589 25566.33194 26212.41305 26249.86308 26630.98465 0.899119113 1.196630642 1.43650789 0.868263323 1.106451153 1.075831753 0.96002203 0.984282534 0.985688792 1 14.70081815 -5.291206871 24.99699074 1.002841942 1.179340584 0.272301087 0.134763575 923.1768117 775227.6031 0.038413005 0.056983683 5.11E-06 5.291206871 0.176498642 WMGIAFR ddPTM_HeLa_A486_30min_R1 1 WMGIAFR 7 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0QYZ0 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 0 0 107.29 0.023435 12227000 13813 13798 14005 6738.4 18039 16477 16630 17542 13978 16965 FALSE FALSE TRUE 12844.78003 12704.59623 19428.11107 15687.33574 15776.38041 14444.23527 12468.99811 13548.06954 15189.62429 12716.85358 1.0100596 0.999036134 1.527745126 1.233586252 1.240588351 1.135834047 0.980509686 1.065363335 1.194448312 1 13.63445414 -6.516238056 6.372205497 1.064110333 1.208975725 0.171714252 0.146622867 0.288664425 54.31667565 0.058053337 0.047596422 3.05E-07 6.516238056 0.144865392 WNNNKKS(ph)PIK ddPTM_HeLa_A485_30min_R1 2 WNNNKKSPIK 10 2 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 WNNNKKS(1)PIK;WNNNKKS(1)PIK ; 86.729 0.0016797 3857600000 2927680 1958010 1255050 4872720 3843960 3888170 7142700 6333100 2622440 8244800 TRUE FALSE FALSE 3578932.316 2186982.237 1719345.222 5138904.355 3461241.845 4091748.569 5616603.795 4779897.295 3148739.654 6189523.094 0.578224245 0.353336146 0.27778315 0.830258532 0.55920978 0.661076549 0.907437247 0.772256153 0.508720883 1 22.56139682 -5.263939656 24.99967455 0.734035719 0.398136672 0.501788134 0.157194872 183.5921288 1835699.871 0.043372783 0.067857712 5.45E-06 5.263939656 -0.335899047 WNNNKKS(ph)PIK ddPTM_HeLa_A486_30min_R1 2 WNNNKKSPIK 10 2 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 WNNNKKS(1)PIK;WNNNKKS(1)PIK ; 82.069 0.0044805 3689000000 5007100 3723270 1517460 3462790 4438700 6383900 9522900 8813000 3329280 9226100 TRUE FALSE FALSE 4656128.147 3428224.525 2105061.151 8061550.12 3881956.857 5596319.325 7140169.697 6806472.286 3617864.671 6915824.508 0.673257128 0.495707276 0.304383252 1.165667248 0.561315119 0.809204935 1.032439399 0.984188115 0.523128467 1 22.72146983 -5.249706017 24.99068942 0.858957399 0.491575032 0.408170157 0.207763405 764.6097118 1628526.398 0.055603275 0.095314661 5.63E-06 5.249706017 -0.367382367 WNNNKKS(ph)PIKASDLTK ddPTM_HeLa_A485_30min_R1 2 WNNNKKSPIKASDLTK 16 3 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 WNNNKKS(0.99)PIKAS(0.009)DLT(0.001)K;WNNNKKS(1)PIKASDLTK ; 75.611 0.0059951 982340000 516926 508465 142011 613180 974600 1163050 2724420 4050810 461311 1092950 TRUE FALSE FALSE 631914.4053 567925.5587 194546.7785 646676.4707 877565.402 1223945.5 2142325.411 3057342.496 553891.8863 820497.6793 0.770159894 0.692172048 0.237108262 0.788151493 1.069552571 1.491711105 2.611007276 3.726204928 0.675068194 1 19.64613973 -6.312398468 2.077708898 2.208082844 0.626333634 0.349815682 0.815047843 0.313721353 2.660443368 0.325757813 0.289194533 4.87E-07 6.312398468 -1.58174921 WNSVS(ph)PASAGK ddPTM_HeLa_A485_30min_R1 1 WNSVSPASAGK 11 0 E5RJU9;Q86UE4;H0YBE0;H0YB56 E5RJU9 MTDH Protein LYRIC 1 0 WNS(0.004)VS(0.994)PAS(0.002)AGK 102.83 0.00067496 0 133920 96974 82806 168010 100930 88962 104200 111250 108200 321750 TRUE FALSE FALSE 163710.042 108314.2657 113439.3852 177187.9609 90881.05481 93619.91276 81936.81876 83965.76307 129914.7475 241543.6464 0.67776588 0.448425232 0.469643424 0.733564983 0.376251068 0.387590045 0.339221586 0.347621493 0.537852059 1 17.88192438 -8.036712475 22.37524135 1.000000003 0.468138144 0.60580808 0.126831003 1072.728433 653798.3768 0.12814747 0.033087526 9.19E-09 8.036712475 -0.531861859 WNSVS(ph)PASAGK ddPTM_HeLa_A486_30min_R1 1 WNSVSPASAGK 11 0 E5RJU9;Q86UE4;H0YBE0;H0YB56 E5RJU9 MTDH Protein LYRIC 1 0 WNS(0.022)VS(0.947)PAS(0.031)AGK 69.602 0.013855 69486000 136860 159440 94938 37446 151250 162730 163800 129420 132800 168470 TRUE FALSE FALSE 127266.8207 146805.3937 131700.5361 87176.18042 132278.8146 142654.0271 122815.5075 99953.89122 144311.2109 126284.0154 1.0077825 1.162501788 1.042891578 0.690318407 1.047470768 1.129628533 0.97253407 0.791500736 1.142751206 1 16.94631251 -5.009712245 24.94220581 0.96142136 1.089530813 0.112036002 0.135855751 910.009209 2337031.934 0.036496437 0.069715948 9.78E-06 5.009712245 0.128109453 WPFSGKT(ph)SPPCS(ph)PANLSR ddPTM_HeLa_A485_30min_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 WPFS(0.011)GKT(0.708)S(0.283)PPCS(0.997)PANLS(0.002)R 67.88 0.0065138 1154600000 380250 458240 420390 400560 784750 528200 731030 922800 386490 552640 TRUE FALSE FALSE 464835.3007 511827.1818 575909.7549 422441.5785 706617.5346 555855.7352 574839.4685 696481.8531 464054.9979 414877.0186 1.120417087 1.233684101 1.388145713 1.018233259 1.703197581 1.33980845 1.385565946 1.678767013 1.118536282 1 18.66232422 -4.373450457 0.852318901 1.377327276 1.017388172 0.053324088 0.23058826 4.817833077 3.070917056 0.082058466 1.581594599 4.23E-05 4.373450457 -0.359939104 WPFSGKT(ph)SPPCSPANLSR ddPTM_HeLa_A486_30min_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 WPFS(0.032)GKT(0.589)S(0.379)PPCSPANLSR 66.871 0.010439 646650000 365780 328360 252840 166580 494460 348600 481020 524620 262410 399390 TRUE FALSE FALSE 340140.7109 302339.5577 350746.4193 387806.6585 432440.2161 305593.2763 360663.7083 405175.4784 285155.9101 299380.1444 1.136149866 1.009885136 1.171575423 1.295365326 1.444451892 1.02075332 1.204701497 1.353381264 0.952487716 1 18.19161902 -9.988639348 11.01309248 0.999980627 1.184304947 0.110047278 0.149132575 0 0 0.145853994 0.03537479 1.03E-10 9.988639348 0.18432432 WPFSGKTS(ph)PPCS(ph)PANLSR ddPTM_HeLa_A486_30min_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 2 0 WPFS(0.013)GKT(0.254)S(0.733)PPCS(0.893)PANLS(0.107)R 76.959 0.0046305 1166000000 385720 409150 346800 245670 675260 390670 644910 753320 317910 537490 TRUE FALSE FALSE 358683.0199 376727.4639 481090.2476 571932.1755 590562.5943 342473.1074 483546.6968 581805.4809 345466.6948 402899.0055 0.890255411 0.93504193 1.194071569 1.419542286 1.465783202 0.850022221 1.200168504 1.444047945 0.857452339 1 18.62005872 -4.745186346 5.213897884 1.203455463 0.905154075 0.192076329 0.214428063 0.253588301 19.25433854 0.055835709 0.142591827 1.80E-05 4.745186346 -0.298301388 WPFSGKTS(ph)PPCSPANLSR ddPTM_HeLa_A485_30min_R1 1 WPFSGKTSPPCSPANLSR 18 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 WPFS(0.009)GKT(0.233)S(0.758)PPCSPANLSR 95.209 0.00026448 639380000 408080 666170 535290 503780 973280 735750 1054600 1246700 673220 843070 TRUE FALSE FALSE 498855.9881 744072.7866 733316.0463 531300.2258 876376.8258 774272.7323 829276.0947 940944.8703 808329.0789 632908.1646 0.788196481 1.175640999 1.158645262 0.839458638 1.384682447 1.223357156 1.310262912 1.486700477 1.277166458 1 19.27163665 -5.773352089 24.99864728 1.303341467 1.015722154 0.422152008 0.163774669 212.3357145 445582.032 0.049389926 0.056432203 1.69E-06 5.773352089 -0.287619313 WPFWLSPR ddPTM_HeLa_A485_30min_R1 1 WPFWLSPR 8 0 P26639;P26639-2;B7ZLP8;A2RTX5-2;A2RTX5 P26639 TARS;TARSL2 "Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic" 0 0 132.29 0.002271 17892000 10607 11516 11385 11768 12907 9261 11719 10565 9259.3 15919 FALSE FALSE TRUE 12966.49056 12862.69602 15596.78527 12410.85604 11621.93376 9745.89164 9215.139915 7973.917185 11117.55658 11950.68627 1.084999662 1.076314425 1.305095366 1.03850572 0.97249091 0.815508953 0.771097133 0.667235086 0.930286038 1 13.54480585 -5.906542627 1.953033099 0.811647209 1.146337229 0.624650373 0.105928076 0.19835852 1.545702599 0.037719177 0.044259036 1.24E-06 5.906542627 0.33469002 WPFWLSPR ddPTM_HeLa_A486_30min_R1 2 WPFWLSPR 8 0 P26639;P26639-2;B7ZLP8;A2RTX5-2;A2RTX5 P26639 TARS;TARSL2 "Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic" 0 0 ; ; 132.29 0.002271 35109000 20867.3 24945 22090 9039.2 27022 23261 26602 23414 23521 22801 FALSE FALSE TRUE 19404.61003 22968.26735 30643.83959 21043.71442 23632.64879 20391.29432 19945.89823 18083.14332 25559.81922 17091.48119 1.135338115 1.343843 1.792930598 1.231239948 1.38271508 1.19306771 1.167008173 1.058020842 1.495471278 1 14.06098981 -6.150075927 1.941614928 1.181279724 1.404388522 0.18376611 0.201098914 0.585748614 4.359783867 0.079047696 0.078276126 7.08E-07 6.150075927 0.223108798 WPGS(ph)PTSR ddPTM_HeLa_A486_30min_R1 2 WPGSPTSR 8 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 0 WPGS(0.496)PT(0.496)S(0.009)R;WPGS(0.499)PT(0.499)S(0.001)R ; 80.219 0.0090065 525310000 812640 940620 841750 347500 1014940 840080 983160 960270 833980 1084820 TRUE FALSE FALSE 755678.1325 866081.8455 1167698.143 808997.5617 887636.7613 736439.4709 737162.9692 741637.4835 906270.0579 813174.011 0.929294496 1.065063361 1.435975728 0.994864015 1.091570499 0.905635769 0.906525491 0.91202802 1.114484779 1 19.63320458 -5.896379497 2.16512597 0.96176086 1.132960728 0.18210003 0.138216953 0.488163371 4.668891407 0.049705112 0.058308019 1.27E-06 5.896379497 0.171199867 WPQGAVPQLPPSAPAT(ph)SEMTTTPERPR ddPTM_HeLa_A485_30min_R1 1 WPQGAVPQLPPSAPATSEMTTTPERPR 27 1 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 WPQGAVPQLPPS(0.004)APAT(0.37)S(0.224)EMT(0.162)T(0.138)T(0.101)PERPR 85.801 0.0053055 213770000 42568 48913 58799 54630 61767 57187 56073 69781 48248 52448 TRUE FALSE FALSE 52037.10474 54632.94986 80551.19693 57614.29857 55617.2606 60181.22289 44092.54548 52667.10034 57930.93104 39373.67883 1.321621608 1.387550046 2.045813328 1.463269379 1.412549252 1.528463295 1.119848253 1.337622033 1.471311108 1 15.26494389 -6.739304322 23.51749483 1.260330615 1.535772162 0.295722423 0.220558447 170.2620759 180895.2038 0.087044371 0.067350502 1.82E-07 6.739304322 0.275441547 WPQGAVPQLPPSAPAT(ph)SEMTTTPERPR ddPTM_HeLa_A486_30min_R1 1 WPQGAVPQLPPSAPATSEMTTTPERPR 27 1 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 WPQGAVPQLPPS(0.023)APAT(0.753)S(0.096)EMT(0.057)T(0.044)T(0.027)PERPR 107.91 0.00054176 132840000 64489 63392 45506 23989 69685 64564 76534 71041 53732 57954 TRUE FALSE FALSE 59968.65412 58368.58705 63127.14189 55847.60434 60944.45751 56598.75012 57384.38371 54866.51511 58389.53302 43441.94118 1.380432193 1.343599882 1.453138147 1.285568803 1.402894435 1.3028596 1.32094428 1.262984886 1.344082042 1 15.40680095 -12.91090725 0.213367624 2.14E-11 1.395998474 0.828149073 0.048245743 31.8296586 0.483363964 13.8120026 0.095465081 1.23E-13 12.91090725 1.395998474 WPQGAVPQLPPSAPATSEMTTT(ph)PERPR ddPTM_HeLa_A485_30min_R1 1 WPQGAVPQLPPSAPATSEMTTTPERPR 27 1 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 WPQGAVPQLPPSAPAT(0.041)S(0.041)EMT(0.232)T(0.181)T(0.506)PERPR 114.63 0.0003044 366740000 120210 169990 180360 133900 200190 160550 189450 212820 148240 190460 TRUE FALSE FALSE 146950.2998 189868.8518 247082.6694 141214.6179 180258.3807 168956.1497 148972.4598 160625.5613 177990.4083 142981.8272 1.027755084 1.327922964 1.728070443 0.987640323 1.260708331 1.181661706 1.041897861 1.123398438 1.244846368 1 17.12547227 -5.349842814 24.70006653 1.130338827 1.358151175 0.272063099 0.180244921 86.61688886 24197.98123 0.050967665 0.075597278 4.47E-06 5.349842814 0.227812348 WPQGAVPQLPPSAPATSEMTTT(ph)PERPR ddPTM_HeLa_A486_30min_R1 1 WPQGAVPQLPPSAPATSEMTTTPERPR 27 1 F8VPD4;P27708;H7BZB3 F8VPD4 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 WPQGAVPQLPPS(0.006)APAT(0.158)S(0.158)EMT(0.124)T(0.097)T(0.457)PERPR 110.16 0.00046228 148460000 52746 57639 50805 18330 61539 48126 65237 60959 49554 59349 TRUE FALSE FALSE 49048.77778 53071.47572 70478.05661 42673.16635 53820.20479 42188.70343 48914.01259 47079.96643 53849.38062 44487.6241 1.102526349 1.192949203 1.58421714 0.959214326 1.209779256 0.94832449 1.099497075 1.058271089 1.210435075 1 15.44111643 -5.310865406 24.9999159 1.073851505 1.283204692 0.339626357 0.142752962 427.8555424 216410.3993 0.0394409 0.0585004 4.89E-06 5.310865406 0.209353187 WPS(ph)LATS(ph)ACTPISTSK ddPTM_HeLa_A486_30min_R1 1 WPSLATSACTPISTSK 16 0 A0A087WTP8;A0A087WSV4;A0A087X0Z1;Q96P64 A0A087WTP8 AGAP4 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4" 2 0 WPS(0.829)LAT(0.172)S(0.999)ACTPISTSK 75.669 0.012847 390990000 40009 86992 163880 2928.5 113150 29772 16217 32005 81744 10185 TRUE FALSE FALSE 37204.57571 80098.4371 227338.7249 6817.695998 98957.67192 26099.03334 12159.33507 24718.16016 88829.63574 7634.609707 4.873147042 10.49149075 29.77738661 0.892998629 12.96171982 3.418515725 1.592659683 3.237645553 11.63512467 1 12.89833869 WPT(ph)GDNIHAEHQVR ddPTM_HeLa_A485_30min_R1 1 WPTGDNIHAEHQVR 14 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 WPT(1)GDNIHAEHQVR 185.59 3.39E-17 239590000 68766 64237 86193 110800 121820 66019 87307 71491 91029 147530 TRUE FALSE FALSE 84062.75946 71748.95836 118079.3775 116852.7234 109691.1731 69475.65276 68653.14622 53957.72016 109297.6853 110753.4861 0.759007797 0.647825733 1.066145922 1.055070387 0.990408311 0.627299918 0.619873456 0.487187556 0.986855486 1 16.75699258 -6.262535115 24.96698065 0.704419391 0.906912027 0.130378641 0.192536358 168.137027 3831057.652 0.068164153 0.063538142 5.46E-07 6.262535115 0.202492636 WPT(ph)GDNIHAEHQVR ddPTM_HeLa_A486_30min_R1 2 WPTGDNIHAEHQVR 14 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 WPT(1)GDNIHAEHQVR;WPT(1)GDNIHAEHQVR ; 211.06 4.74E-22 811610000 193341 363270 284930 115658 403750 338140 351980 356560 290520 263660 TRUE FALSE FALSE 179788.7943 334483.1622 395262.5267 269257.669 353107.9102 296423.7248 263910.8811 275379.0717 315702.5075 197637.8199 0.909688209 1.692404634 1.999933651 1.362379271 1.786641395 1.499833002 1.335325806 1.393352102 1.597379023 1 17.59249952 -6.602907358 4.978351364 1.366418688 1.578948198 0.097072195 0.302971324 0.531705172 23.5038922 0.117326282 0.09011545 2.50E-07 6.602907358 0.21252951 WQAHCLTLHIYR ddPTM_HeLa_A485_30min_R1 2 WQAHCLTLHIYR 12 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 0 0 ; ; 122.39 0.00038774 19775800 12950.6 14086.6 14102.3 10499.4 15035.8 11670.3 13609 15465.2 9947.2 15383.9 FALSE FALSE TRUE 15831.41629 15733.90533 19319.32762 11072.95564 13538.78296 12281.33886 10701.32597 11672.33545 11943.5118 11548.97685 1.370806825 1.36236357 1.672817243 0.958782391 1.172292848 1.063413584 0.926603812 1.010681345 1.034161896 1 13.49547743 -5.273686206 24.99959905 1.027949953 1.458032653 0.804132403 0.100577893 311.733849 636345.4556 0.028680957 0.042886824 5.32E-06 5.273686206 0.430082699 WQELS(ph)PETSGK ddPTM_HeLa_A485_30min_R1 1 WQELSPETSGK 11 0 Q9NWF9-3;Q9NWF9;Q9NWF9-1 Q9NWF9-3 RNF216 E3 ubiquitin-protein ligase RNF216 1 0 WQELS(0.982)PET(0.017)S(0.001)GK 85.457 0.003662 136320000 111790 107720 128380 122550 143030 112830 156520 160750 118810 185690 TRUE FALSE FALSE 136657.2998 120316.917 175873.1043 129244.5962 128789.431 118737.6043 123078.2233 121325.8105 142654.0772 139400.9004 0.980318631 0.863099999 1.261635354 0.927143195 0.923878043 0.851770713 0.882908382 0.870337352 1.023336842 1 17.08888035 -5.486754083 24.99970816 0.914214965 1.030586701 0.180933761 0.104941325 945.6667531 654438.7708 0.029343809 0.043505339 3.26E-06 5.486754083 0.116371736 WQFTLPMMSTLYR ddPTM_HeLa_A485_30min_R1 1 WQFTLPMMSTLYR 13 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 88.681 0.026961 4478000 2370.7 3305.5 3631.8 3005.3 4236.7 2624.3 3575.1 3289.7 2474 4815 FALSE FALSE TRUE 2898.054036 3692.049471 4975.353952 3169.471929 3814.879272 2761.70429 2811.250679 2482.895917 2970.509107 3614.709114 0.801739212 1.021396011 1.376418903 0.876826276 1.055376561 0.764018405 0.777725286 0.686886784 0.821783721 1 11.81966384 -6.260555351 24.93554887 0.78849091 1.037217344 0.310055488 0.159278287 87.7350547 2474736.786 0.054528726 0.051580751 5.49E-07 6.260555351 0.248726434 WQFTLPMMSTLYR ddPTM_HeLa_A486_30min_R1 1 WQFTLPMMSTLYR 13 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 94.616 0.016804 5868600 3832 5856.8 5027.6 1745.4 7807 6563.9 5637 5265.4 5898.2 6451 FALSE FALSE TRUE 3563.396588 5392.685838 6974.421364 4063.379408 6827.773263 5754.112755 4226.562978 4066.583363 6409.460725 4835.627611 0.736904674 1.115198744 1.442299103 0.840300316 1.411972511 1.189941248 0.874046415 0.840962888 1.325466153 1 12.23948743 -6.742348646 24.96520034 0.996865713 1.137255482 0.047800215 0.238248797 690.5758576 903074.8422 0.090475589 0.069967725 1.81E-07 6.742348646 0.140389769 WQQHQGLLPPGMTIDLFR ddPTM_HeLa_A485_30min_R1 1 WQQHQGLLPPGMTIDLFR 18 0 Q2TAY7;Q2TAY7-2 Q2TAY7 SMU1 "WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed" 0 0 61.815 0.01722 8662400 8394.7 8759.9 8840.3 8869.9 8649.6 10329 12962 13221 5636.1 12672 FALSE FALSE TRUE 10262.07205 9784.294104 12110.69485 9354.440177 7788.415453 10869.81047 10192.56281 9978.52902 6767.213573 9513.103611 1.078730189 1.028507047 1.273054025 0.983321591 0.818703945 1.142614536 1.071423505 1.048924665 0.711357076 1 13.21570038 -6.247824412 0.453766359 0.927312486 1.113624315 0.148420451 0.137931986 2.698637217 1.164744665 0.138676034 0.205704071 5.65E-07 6.247824412 0.186311829 WQRPS(ph)SPPPFLPAASEEAEPAEGLR ddPTM_HeLa_A485_30min_R1 4 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR ;;; 202.81 9.82E-29 1926820000 729905 774326 841747 861593 1060357 676822 864309 684335 926296 1198740 TRUE FALSE FALSE 892269.8491 864876.69 1153144.243 908659.6439 954784.1339 712259.3534 679642.3214 516500.7683 1112195.111 899916.1792 0.991503286 0.961063608 1.281390723 1.009715866 1.060970073 0.791472995 0.755228473 0.573943196 1.235887449 1 19.77943111 -6.252913984 22.66293552 0.837422999 1.064783433 0.203248782 0.181545487 242.066502 643480.7977 0.059344077 0.058277575 5.59E-07 6.252913984 0.227360433 WQRPS(ph)SPPPFLPAASEEAEPAEGLR ddPTM_HeLa_A486_30min_R1 2 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR ; 172.83 1.58E-14 1103300000 497210 597340 526650 180187 667210 583260 568840 654440 565010 546730 TRUE FALSE FALSE 462358.1466 550004.6029 730582.9842 419484.4421 583522.3003 511303.3114 426510.2154 505438.2983 613985.5217 409825.2494 1.128183652 1.34204665 1.782669529 1.023569052 1.42383199 1.247613006 1.040712392 1.233301997 1.498164212 1 18.64464935 -5.317862539 24.99989067 1.22279336 1.410082321 0.162166887 0.215027968 559.3122674 247817.9928 0.060458164 0.089674002 4.81E-06 5.317862539 0.18728896 WQRPS(ph)SPPPFLPAASEEAEPAEGLRVPGLAK ddPTM_HeLa_A485_30min_R1 1 WQRPSSPPPFLPAASEEAEPAEGLRVPGLAK 31 2 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLRVPGLAK 207.53 1.30E-29 914190000 45946 66890 50487 43322 90037 76440 100760 153330 64057 72072 TRUE FALSE FALSE 56166.52919 74712.20363 69164.24224 45688.57116 81072.60014 80442.2802 79231.80287 115725.5771 76912.65233 54105.77679 1.038087475 1.380854468 1.278315299 0.844430556 1.498409319 1.486759547 1.464387124 2.138876548 1.421523854 1 15.72349502 -5.929855579 10.21605252 1.562439433 1.163259928 0.258698353 0.293554071 0.519134537 72.09251854 0.089983911 0.102073434 1.18E-06 5.929855579 -0.399179506 WQRPSS(ph)PPPFLPAASEEAEPAEGLR ddPTM_HeLa_A486_30min_R1 3 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.165)S(0.835)PPPFLPAASEEAEPAEGLR;WQRPS(0.212)S(0.788)PPPFLPAASEEAEPAEGLR;WQRPS(0.425)S(0.575)PPPFLPAASEEAEPAEGLR ;; 157.75 3.45E-10 1066470000 512624 649670 564070 213782 672430 631080 639470 646400 600860 583280 TRUE FALSE FALSE 476691.7048 598187.7831 782493.0103 497695.2999 588087.5592 553223.766 479467.8424 499228.8308 652943.0286 437222.8915 1.090271608 1.368152937 1.789689025 1.138310252 1.345052079 1.265312903 1.096621087 1.141817687 1.493387106 1 18.73800941 WQRPSS(ph)PPPFLPAASEEAEPAEGLRVPGLAK ddPTM_HeLa_A485_30min_R1 1 WQRPSSPPPFLPAASEEAEPAEGLRVPGLAK 31 2 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.389)S(0.611)PPPFLPAASEEAEPAEGLRVPGLAK 231.28 6.82E-40 914880000 242300 340120 233790 226250 371400 370900 459900 663670 284070 326220 TRUE FALSE FALSE 296198.7991 379894.0753 320278.6498 238609.4646 334422.1119 390319.7505 361638.608 500903.8919 341080.2434 244899.3576 1.209471523 1.551225283 1.307797019 0.974316417 1.365549159 1.593796547 1.47668255 2.045345879 1.392736374 1 17.90182946 -6.138152302 4.55994403 1.56448811 1.273245852 0.123715076 0.276004734 0.386785063 12.68497953 0.091301313 0.091649218 7.28E-07 6.138152302 -0.291242258 WQRPSS(ph)PPPFLPAASEEAEPAEGLRVPGLAK ddPTM_HeLa_A486_30min_R1 2 WQRPSSPPPFLPAASEEAEPAEGLRVPGLAK 31 2 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.404)S(0.596)PPPFLPAASEEAEPAEGLRVPGLAK;WQRPS(0.413)S(0.587)PPPFLPAASEEAEPAEGLRVPGLAK ; 196.77 3.86E-23 1098640000 265640 248440 177398 125197 344230 238600 339310 340380 193647 319140 TRUE FALSE FALSE 247020.0078 228752.7096 246091.2565 291464.9431 301053.4636 209163.9579 254411.0491 262882.9044 210432.4779 239225.2667 1.032583268 0.956223031 1.028700939 1.218370229 1.258451783 0.874338906 1.063479007 1.098892722 0.879641523 1 17.86801025 -6.278293929 24.97556089 0.99446428 1.09368235 0.224355656 0.106235657 1654.739545 2452033.017 0.040730215 0.03601407 5.27E-07 6.278293929 0.09921807 WQS(ph)PVTK ddPTM_HeLa_A485_30min_R1 7 WQSPVTK 7 0 A9Z1X7;M0R088 A9Z1X7;M0R088 SRRM1 1 0 WQS(1)PVTK;WQS(0.994)PVT(0.006)K;WQS(0.999)PVT(0.001)K;WQS(0.999)PVT(0.001)K;WQS(1)PVTK;WQS(1)PVTK;WQS(1)PVTK ;;;;;; 163.38 0.00036425 49261200000 19859900 20524900 16168200 23444400 26129200 21519500 30952000 31259800 18247800 30250300 TRUE FALSE FALSE 24277666.24 22925108.51 22149489.99 24725108.21 23527685.1 22646227.74 24338852.35 23593285.04 21909966.08 22709456.93 1.069055342 1.009496114 0.975342126 1.088758234 1.036030284 0.997215733 1.071749643 1.038918945 0.964794806 1 24.43678987 -7.752388023 24.98145079 0.982397401 1.034609719 0.2805581 0.034175839 223.1603226 615927.1062 0.023859403 0.008734031 1.77E-08 7.752388023 0.052212318 WQS(ph)PVTK ddPTM_HeLa_A486_30min_R1 10 WQSPVTK 7 0 A9Z1X7;M0R088 A9Z1X7;M0R088 SRRM1 1 0 WQS(0.997)PVT(0.003)K;WQS(1)PVTK;WQS(0.997)PVT(0.003)K;WQS(0.998)PVT(0.002)K;WQS(1)PVTK;WQS(0.999)PVT(0.001)K;WQS(1)PVTK;WQS(1)PVTK;WQS(1)PVTK;WQS(1)PVTK ;;;;;;;;; 188.91 0.00043877 52338340000 21097560 21308550 12709900 7801190 20816360 20831970 25921170 24534520 16232210 24418570 TRUE FALSE FALSE 19618729.99 19619982.89 17631513.66 18161564.57 18205378.02 18261933.35 19435419.1 18948545.38 17639231.03 18304001.13 1.071827403 1.071895852 0.963260084 0.992218283 0.994611937 0.997701716 1.061812604 1.035213298 0.963681706 1 24.12565571 -4.737447819 24.8515572 1.003823458 1.071861734 0.502608333 0.028064999 193.5116971 200445.0397 0.007632352 0.020170906 1.83E-05 4.737447819 0.068038276 WQSPVT(ph)K ddPTM_HeLa_A485_30min_R1 1 WQSPVTK 7 0 A9Z1X7;M0R088 A9Z1X7;M0R088 SRRM1 1 0 WQS(0.412)PVT(0.588)K 138.06 0.0075252 13029000000 377120 412930 311350 477340 514370 479570 646670 678400 382240 663110 TRUE FALSE FALSE 461009.043 461218.5715 426531.3214 503415.8755 463157.5167 504679.5436 508503.6717 512021.3363 458952.0619 497808.8806 0.926076374 0.926497275 0.856817421 1.011263348 0.930392234 1.013801809 1.021483729 1.028550024 0.921944304 1 18.92523244 -5.27333757 24.98084483 0.990688924 0.905467047 0.51088253 0.038757334 586.70643 1231818.677 0.010944033 0.016379991 5.33E-06 5.27333757 -0.085221878 WREEQMER ddPTM_HeLa_A485_30min_R1 1 WREEQMER 8 1 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 0 0 169.41 3.27E-05 232690000 129300 164880 151710 144270 187900 160430 181910 201140 151140 178200 FALSE FALSE TRUE 158062.3389 184161.2817 207833.8422 152151.1048 169192.0162 168829.8667 143043.4424 151810.0996 181472.4117 133778.0195 1.181526976 1.376618389 1.553572425 1.13734009 1.264722088 1.262014996 1.069259681 1.134791053 1.356518898 1 17.02948157 -5.293462507 24.95114023 1.18353033 1.371177275 0.328535795 0.127746654 748.089245 582879.7215 0.035855962 0.053187804 5.09E-06 5.293462507 0.187646946 WREEQMER ddPTM_HeLa_A486_30min_R1 2 WREEQMER 8 1 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 0 0 ; ; 142.98 0.0004865 286960000 339790 430810 343930 109605 493710 362770 409880 390540 325850 393710 FALSE FALSE TRUE 315972.4757 396671.0466 477108.9068 255165.9791 431784.2881 318015.1258 307323.6887 301622.5674 354094.9404 295122.4534 1.070648716 1.344089689 1.616647264 0.864610524 1.463068239 1.07757008 1.041342959 1.022025142 1.199823789 1 18.17095416 -6.424337308 12.63825722 1.066467757 1.272337555 0.209443554 0.197940394 1.448287603 180.9487501 0.068181351 0.060119906 3.76E-07 6.424337308 0.205869798 WREEQR ddPTM_HeLa_A485_30min_R1 3 WREEQR 6 1 A0A0C4DG89;Q7L014;D6RJA6;H0Y9Q6;F8VW50;P09497-2;P09497;Q2TAC6-3;Q2TAC6-2;Q2TAC6 A0A0C4DG89 DDX46;CLTB;KIF19 Probable ATP-dependent RNA helicase DDX46;Kinesin-like protein;Clathrin light chain B;Kinesin-like protein KIF19 0 0 ;; ;; 148.07 0.0046366 347802000 195419 295988 254141 189424 331783 257437 307553 360451 243901 263153 FALSE FALSE TRUE 238889.2824 330601.2218 348158.3316 199771.7535 298749.5196 270916.0032 241841.7891 272049.8271 292849.6935 197553.8001 1.209236584 1.673474374 1.762346923 1.011227085 1.512243852 1.371353035 1.224181914 1.377092351 1.48237945 1 17.59188607 -12.85680563 0.178946624 1.60E-13 1.497983548 0.238515753 0.212156683 125.3079936 1.743449727 46.73016019 0.71004042 1.39E-13 12.85680563 1.497983548 WREEQR ddPTM_HeLa_A486_30min_R1 2 WREEQR 6 1 A0A0C4DG89;Q7L014;D6RJA6;H0Y9Q6;F8VW50;P09497-2;P09497;Q2TAC6-3;Q2TAC6-2;Q2TAC6 A0A0C4DG89 DDX46;CLTB;KIF19 Probable ATP-dependent RNA helicase DDX46;Kinesin-like protein;Clathrin light chain B;Kinesin-like protein KIF19 0 0 ; ; 154.11 0.0031276 191740000 189480 187648 175888 62145 221690 176497 207723 192608 163944 183306 FALSE FALSE TRUE 176198.4305 172778.0891 243996.544 144676.7006 193883.573 154722.5946 155748.5083 148755.363 178154.7979 137404.9845 1.282329248 1.257436837 1.775747401 1.052921779 1.411037407 1.126033347 1.133499697 1.08260529 1.296567214 1 17.06807481 -6.02924011 1.269855972 1.12846273 1.389156025 0.263898581 0.184660333 0.620312042 2.076824269 0.080103754 0.088657952 9.35E-07 6.02924011 0.260693295 WRLS(ph)PGET(ph)PER ddPTM_HeLa_A485_30min_R1 1 WRLSPGETPER 11 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 2 0 WRLS(1)PGET(1)PER 68.481 0.012627 90627000 47653 65119 56571 52387 86405 60894 63812 68342 53495 65260 TRUE FALSE FALSE 58253.24545 72734.10059 77498.96702 55248.76916 77802.21481 64082.31568 50178.0449 51581.01734 64230.95581 48991.88302 1.189038711 1.48461533 1.581873613 1.12771271 1.588063369 1.308019038 1.024211396 1.05284823 1.311053012 1 15.58025512 -6.608496113 5.254286787 1.103819336 1.399754872 0.433605249 0.160494776 0.197583894 9.16335566 0.060761969 0.046670113 2.46E-07 6.608496113 0.295935536 WRLS(ph)PGET(ph)PER ddPTM_HeLa_A486_30min_R1 2 WRLSPGETPER 11 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 2 0 WRLS(1)PGET(1)PER;WRLS(1)PGET(1)PER ; 100.77 0.0011151 135802000 197120 200925 176904 68328 237040 194117 199601 223370 168351 196889 TRUE FALSE FALSE 183302.9059 185002.9712 245405.9665 159071.0371 207308.2329 170168.8182 149658.7186 172513.5271 182943.8002 147586.7129 1.242001413 1.253520508 1.662791736 1.07781408 1.404653772 1.153009067 1.014039243 1.16889606 1.239568229 1 17.17120332 -6.375703095 5.561590183 1.115369908 1.328099987 0.326971723 0.153536966 0.29375696 12.43779311 0.054121368 0.047476966 4.21E-07 6.375703095 0.21273008 WRLS(ph)PGETPER ddPTM_HeLa_A485_30min_R1 4 WRLSPGETPER 11 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 WRLS(1)PGETPER;WRLS(1)PGETPER;WRLS(1)PGETPER;WRLS(1)PGETPER ;;; 165.49 2.68E-08 1306310000 424589 560569 578310 401619 636620 524741 606480 636420 475086 502810 TRUE FALSE FALSE 519037.3582 626122.6682 792250.9345 423558.429 573235.8775 552215.6274 476900.5935 480336.9971 570431.4025 377468.7205 1.375047335 1.658740537 2.098851882 1.12210206 1.518631469 1.462944073 1.263417517 1.272521327 1.51120178 1 18.52599757 -7.919771573 0.151406413 0.732637314 1.869745582 0.308217027 0.242556275 7.527296645 0.898067775 3.318734656 2.453392221 1.20E-08 7.919771573 1.137108268 WRLS(ph)PGETPER ddPTM_HeLa_A486_30min_R1 4 WRLSPGETPER 11 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 WRLS(1)PGETPER;WRLS(1)PGETPER;WRLS(1)PGETPER;WRLS(1)PGETPER ;;; 172.43 1.25E-08 1120890000 452344 488810 483608 207413 622130 459976 545590 554230 441601 527090 TRUE FALSE FALSE 420637.0215 450074.9154 670873.9691 482867.9461 544096.6543 403228.8378 409077.6113 428043.9278 479879.3302 395103.2332 1.064625612 1.139132453 1.697971347 1.222131093 1.377099979 1.020565776 1.035368929 1.083372374 1.214566953 1 18.59187013 -6.26364154 24.99395341 1.073772707 1.309006466 0.31764976 0.16784527 255.6036665 2901021.659 0.059752381 0.055282565 5.45E-07 6.26364154 0.235233759 WRPHS(ph)PDGPR ddPTM_HeLa_A485_30min_R1 9 WRPHSPDGPR 10 1 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JH78;C9IYH5 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR ;;;;;;;; 138.02 1.74E-05 37056830000 8758520 12569670 12153450 8789962 13655680 11542520 13120670 15245880 10425370 10769900 TRUE FALSE FALSE 10706822.56 14039583.56 16649516.9 9270135.367 12296072.55 12146868.5 10317331.67 11506804.03 12517646.13 8085162.135 1.324255764 1.736462835 2.059268154 1.146561468 1.520819539 1.502365481 1.276082223 1.423200158 1.548224503 1 22.94684527 -12.11033174 0.128653617 8.82E-16 1.765586454 0.302109641 0.238035423 102.1916792 1.351258252 30.57686449 2.169628821 7.76E-13 12.11033174 1.765586454 WRPHS(ph)PDGPR ddPTM_HeLa_A486_30min_R1 8 WRPHSPDGPR 10 1 Q6Y7W6;I1E4Y6;Q6Y7W6-3;C9JH78;C9IYH5 Q6Y7W6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR ;;;;;;; 130.07 4.90E-05 38074800000 7098750 7240146 6408640 2135434 8221980 6268914 6887363 7140422 5636101 6916860 TRUE FALSE FALSE 6601164.283 6666410.463 8890237.037 4971398.271 7190702.601 5495519.128 5164071.93 5514703.785 6124642.773 5184833.235 1.273168101 1.285752147 1.714662099 0.958834749 1.386872494 1.059922061 0.995995762 1.06362221 1.181261286 1 22.30586616 -5.835229782 1.19867599 1.063100721 1.380705052 0.339501835 0.179940968 0.532602553 1.618519122 0.074986559 0.101326687 1.46E-06 5.835229782 0.317604332 WRPHS(ph)PGWR ddPTM_HeLa_A485_30min_R1 4 WRPHSPGWR 9 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1 E7ESB6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 WRPHS(1)PGWR;WRPHS(1)PGWR;WRPHS(1)PGWR;WRPHS(1)PGWR ;;; 106.79 0.00053154 2646900000 1652690 2345920 2168060 1496690 2305140 2096250 2321610 2658690 1858690 1891890 TRUE FALSE FALSE 2020325.189 2620254.937 2970115.615 1578450.385 2075632.168 2206006.409 1825579.058 2006642.109 2231712.034 1420276.641 1.422487092 1.844890539 2.091223308 1.111368264 1.461428083 1.553223045 1.285368643 1.412852997 1.571322072 1 20.43774053 -9.654053971 0.072210623 5.40E-09 2.365452697 0.316644919 0.252442317 106.7461173 1.738534495 39.24481541 19.01676084 2.22E-10 9.654053971 2.365452692 WRPHS(ph)PGWR ddPTM_HeLa_A486_30min_R1 4 WRPHSPGWR 9 1 E7ESB6;Q6Y7W6-4;Q6Y7W6-5;C9JHW1 E7ESB6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 WRPHS(1)PGWR;WRPHS(1)PGWR;WRPHS(1)PGWR;WRPHS(1)PGWR ;;; 120.87 0.00020412 2625580000 2210060 1921610 1767160 671670 2340210 1717760 1945520 2048030 1623700 2172500 TRUE FALSE FALSE 2055146.207 1769334.625 2451451.678 1563681.704 2046679.04 1505840.236 1458730.318 1581738.277 1764443.623 1628491.859 1.26199354 1.086486626 1.505350895 0.960202346 1.256794149 0.92468392 0.895755364 0.971290257 1.083483232 1 20.63510508 -5.94826696 1.449323407 0.972204785 1.24128389 0.387002167 0.143058074 0.410297133 1.77932213 0.055759457 0.065238637 1.13E-06 5.94826696 0.269079106 WRS(ph)IFNLGRSGHETK ddPTM_HeLa_A485_30min_R1 1 WRSIFNLGRSGHETK 15 2 A0A0A0MRJ9;A0A0A0MRJ8;Q7Z6I6-2;Q7Z6I6-3;Q7Z6I6 A0A0A0MRJ9 ARHGAP30 Rho GTPase-activating protein 30 1 0 WRS(0.999)IFNLGRS(0.001)GHETK 63.46 0.014673 483130000 287780 523950 453860 124930 540450 458890 402990 504350 425820 170580 TRUE FALSE FALSE 351795.6682 585221.3947 621761.7007 131754.6096 486640.9004 482916.7708 316887.8944 380657.3717 511278.1681 128057.5453 2.747168606 4.569987605 4.855330463 1.028870335 3.80017358 3.771091892 2.474574174 2.97254934 3.992565741 1 16.96643274 -10.85728617 2.607220204 4.29E-09 3.35616214 0.308495893 1.05861782 28881636.55 19998110.07 179978541.3 0.269461638 1.39E-11 10.85728617 3.356162136 WRS(ph)IFNLGRSGHETK ddPTM_HeLa_A486_30min_R1 1 WRSIFNLGRSGHETK 15 2 A0A0A0MRJ9;A0A0A0MRJ8;Q7Z6I6-2;Q7Z6I6-3;Q7Z6I6 A0A0A0MRJ9 ARHGAP30 Rho GTPase-activating protein 30 1 0 WRS(1)IFNLGRSGHETK 66.215 0.010004 313420000 330170 409010 334270 11019 464180 277180 232090 278800 368510 85713 TRUE FALSE FALSE 307026.788 376598.558 463708.2961 25652.78887 405958.2161 242984.3498 174018.6272 215323.3262 400452.7435 64249.9069 4.778633975 5.861464649 7.217260202 0.399265775 6.31842497 3.781863064 2.708465048 3.351340672 6.232736557 1 15.97140674 -7.730146905 0.13002223 1.44E-15 7.088448797 0.206384172 1.964158446 12.13203672 1.429189213 37.24678106 31.69220692 1.86E-08 7.730146905 7.088448797 WRS(ph)LQQLAEER ddPTM_HeLa_A485_30min_R1 3 WRSLQQLAEER 11 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 WRS(1)LQQLAEER;WRS(1)LQQLAEER;WRS(1)LQQLAEER ;; 248.67 1.28E-22 586550000 498150 652010 625470 509010 785030 691790 950230 947770 540090 739120 TRUE FALSE FALSE 608961.7489 728256.8978 856857.381 536815.9274 706869.6568 728011.0547 747205.5978 715327.9215 648481.109 554870.9865 1.097483494 1.312479685 1.544246143 0.967460798 1.273935156 1.312036622 1.346629426 1.289178816 1.168706104 1 19.08179284 -8.058762151 3.169826993 1.000393471 1.272488626 0.246854969 0.143770359 0.412257497 10.22610706 0.137552274 0.036621331 8.73E-09 8.058762151 0.272095154 WRS(ph)LQQLAEER ddPTM_HeLa_A486_30min_R1 3 WRSLQQLAEER 11 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 WRS(1)LQQLAEER;WRS(1)LQQLAEER;WRS(1)LQQLAEER ;; 231.13 1.67E-22 429860000 376616 394508 321382 157228 477480 392220 486850 490240 327850 452420 TRUE FALSE FALSE 350217.1632 363245.7493 445829.7173 366034.7299 417590.0061 343831.8842 365034.9806 378623.0539 356268.302 339131.0872 1.032689648 1.0711072 1.31462356 1.079331101 1.231352777 1.013861298 1.076383128 1.116450447 1.050532715 1 18.37148351 -6.277616861 24.79564427 1.060282274 1.147354158 0.243518322 0.082414519 1239.927981 1900464.758 0.029180322 0.025814357 5.28E-07 6.277616861 0.087071884 WRS(ph)PIR ddPTM_HeLa_A485_30min_R1 1 WRSPIR 6 1 A0A0A0MRY4;Q96N96-6 A0A0A0MRY4 1 0 WRS(1)PIR 42.109 0.03763 60549000 12181 12033 11360 8423.9 17385 15089 14506 17247 11368 12326 TRUE FALSE FALSE 14890.62143 13440.15468 15562.53673 8884.076327 15654.08836 15879.03671 11406.6746 13017.14621 13649.45333 9253.355043 1.609213237 1.452462876 1.681826392 0.960092451 1.691720277 1.7160302 1.232706899 1.406748811 1.475081553 1 13.17576083 -12.11561058 0.268022882 9.36E-17 1.50875418 0.295691922 0.220928257 87.96484159 2.134737427 49.59982854 0.286531596 7.66E-13 12.11561058 1.50875418 WRVS(ph)LDVNHFAPDELTVK ddPTM_HeLa_A485_30min_R1 1 WRVSLDVNHFAPDELTVK 18 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 WRVS(1)LDVNHFAPDELTVK 161.04 3.42E-12 122300000 79807 83364 72630 86002 98288 106800 133130 156040 83377 122940 TRUE FALSE FALSE 97559.79182 93112.69463 99498.85939 90700.07149 88502.10161 112391.8829 104685.6879 117770.9453 100109.9991 92293.32054 1.057062323 1.008877935 1.07807216 0.982737114 0.958922066 1.21776833 1.134271552 1.276050581 1.084693871 1 16.49393862 -6.261624465 24.99998626 1.159292197 1.018150111 0.393004581 0.076530884 15.31450671 2068500.427 0.024883206 0.023336318 5.47E-07 6.261624465 -0.141142086 WS(ph)GNEPTDEFSDLPLR ddPTM_HeLa_A485_30min_R1 1 WSGNEPTDEFSDLPLR 16 0 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 WS(1)GNEPTDEFSDLPLR 155.22 2.49E-08 87170000 47072 38185 47899 68344 57930 36159 56343 45459 43168 78350 TRUE FALSE FALSE 57543.004 42650.40358 65618.83334 72077.45966 52162.2858 38052.22933 44304.85777 34310.10897 51831.42164 58818.78692 0.978309942 0.725115321 1.11561011 1.22541561 0.886830357 0.646940056 0.75324331 0.583318881 0.881205213 1 15.84398941 -6.002743143 24.95324571 0.74802526 1.005395281 0.32224186 0.160763345 123.8636329 1126753.765 0.051502939 0.057371816 9.94E-07 6.002743143 0.257370021 WS(ph)GNEPTDEFSDLPLR ddPTM_HeLa_A486_30min_R1 1 WSGNEPTDEFSDLPLR 16 0 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 WS(1)GNEPTDEFSDLPLR 149 5.78E-08 118990000 87353 114710 69253 35189 80946 100440 103440 94373 88065 128380 TRUE FALSE FALSE 81230.00579 105619.9618 96069.61626 81921.77035 70792.99789 88048.734 77558.21792 72886.32805 95698.54511 96232.81239 0.844098845 1.097546245 0.998304153 0.851287293 0.735643032 0.914955428 0.805943586 0.757395801 0.99444818 1 16.55424127 -5.263593853 23.14421528 0.849706563 0.991739415 0.19490245 0.102118093 83.68757693 899022.0092 0.027161098 0.042667268 5.45E-06 5.263593853 0.142032853 WS(ph)IPADGR ddPTM_HeLa_A486_30min_R1 1 WSIPADGR 8 0 E5RJF9;P55040 E5RJF9 GEM GTP-binding protein GEM 1 0 WS(1)IPADGR 73.841 0.013874 28197000 43111 45432 33624 15952 51857 45042 51113 49381 41347 50186 TRUE FALSE FALSE 40089.14153 41831.80286 46644.11328 37137.06217 45352.61151 39485.17599 38323.98678 38138.02428 44930.99125 37619.09894 1.06565927 1.111983116 1.239905117 0.987186382 1.205574104 1.049604512 1.018737499 1.013794199 1.194366492 1 15.19917767 WS(ph)PIASTLPELVQR ddPTM_HeLa_A485_30min_R1 2 WSPIASTLPELVQR 14 0 Q13561;Q13561-3;Q13561-2;H0YI98 Q13561 DCTN2 Dynactin subunit 2 1 0 WS(1)PIASTLPELVQR;WS(1)PIASTLPELVQR ; 196.37 8.89E-19 96800000 48983 54886 49255 66466 69603 46983 71293 71552 44022 78677 TRUE FALSE FALSE 59879.09936 61304.44026 67476.47417 70096.86928 62673.08093 49442.95723 56060.66814 54003.75981 52856.81161 59064.27184 1.013795608 1.03792764 1.14242455 1.186789697 1.061099697 0.837104322 0.94914686 0.914321943 0.894903297 1 15.84999808 -6.120324651 5.80362974 0.916410059 1.097782648 0.670523421 0.059625227 0.142514583 6.214000151 0.020676008 0.020752788 7.58E-07 6.120324651 0.181372589 WS(ph)PIASTLPELVQR ddPTM_HeLa_A486_30min_R1 1 WSPIASTLPELVQR 14 0 Q13561;Q13561-3;Q13561-2;H0YI98 Q13561 DCTN2 Dynactin subunit 2 1 0 WS(1)PIASTLPELVQR 167.05 5.36E-12 50655000 26364 27963 21864 13944 28159 27169 30306 32543 23101 37471 TRUE FALSE FALSE 24516.01974 25747.11004 30330.32634 32462.33669 24627.03565 23817.16501 22723.11826 25133.66931 25103.41328 28088.0177 0.872828407 0.916658139 1.079831502 1.155736123 0.876780836 0.847947522 0.808996865 0.894818195 0.893741009 1 14.77766719 -5.917269628 25 0.875820305 1.006512335 0.308015367 0.086564174 33.32033384 10065.66023 0.028633755 0.032467624 1.21E-06 5.917269628 0.130692031 WS(ph)PPQNYK ddPTM_HeLa_A485_30min_R1 4 WSPPQNYK 8 0 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK ;;; 141.91 0.00040018 2503160000 2589060 2134510 1816480 3630820 3104380 2399420 3481500 2774030 2287390 4930290 TRUE FALSE FALSE 3164987.465 2384122.377 2488471.542 3829162.503 2795297.027 2525049.921 2737649.084 2093694.793 2746448.192 3701259.438 0.855110947 0.644138142 0.672331022 1.034556633 0.755228612 0.682213707 0.739653388 0.56567091 0.742030716 1 21.81958483 -5.998530908 24.99690682 0.718415136 0.795291505 0.015233531 0.142735042 162.5975156 2766529.072 0.044383877 0.049968909 1.00E-06 5.998530908 0.076876368 WS(ph)PPQNYK ddPTM_HeLa_A486_30min_R1 4 WSPPQNYK 8 0 H3BRF9;Q96K21-2;Q96K21;H3BRM1;Q96K21-3 H3BRF9;Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK;WS(1)PPQNYK ;;; 96.113 0.0029082 5365530000 3551050 3814870 2046050 1507250 3436430 4075280 4610540 4443760 3077170 4514160 TRUE FALSE FALSE 3302139.733 3512565.808 2838335.355 3508954.172 3005400.906 3572513.388 3456934.127 3432012.855 3343901.573 3383784.954 0.975871628 1.038058226 0.838804887 1.03699089 0.888177277 1.055774358 1.02161756 1.014252649 0.988213382 1 21.69020645 -6.282107398 24.98192131 1.01721525 0.958197919 0.207282953 0.058913825 1346.927985 1628057.973 0.019841306 0.017519072 5.22E-07 6.282107398 -0.059017331 WS(ph)TTAGFLK ddPTM_HeLa_A485_30min_R1 2 WSTTAGFLK 9 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 WS(0.973)T(0.027)T(0.001)AGFLK;WS(0.828)T(0.171)T(0.002)AGFLK ; 122.74 0.00033126 429660000 695580 483920 451250 799980 769550 450020 754530 579000 534760 1023600 TRUE FALSE FALSE 850309.3713 540510.2345 618186.1531 843680.8817 692930.8999 473582.3513 593318.5016 436999.3422 642081.4269 768435.358 1.10654639 0.703390635 0.804473853 1.097920434 0.901742603 0.616294326 0.772112443 0.568687187 0.835569863 1 19.55156438 -6.161652243 8.236869021 0.732666606 0.914731429 0.202735394 0.158519976 0.466339551 34.75821906 0.05117779 0.051210476 6.89E-07 6.161652243 0.182064824 WS(ph)TTAGFLK ddPTM_HeLa_A486_30min_R1 2 WSTTAGFLK 9 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-8;Q8TEW0-5;Q5VWU8;Q8TEW0-9;Q8TEW0-10 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 WS(0.893)T(0.107)TAGFLK;WS(0.881)T(0.117)T(0.001)AGFLK ; 164.33 1.08E-05 781360000 932320 1202760 688690 436510 960870 1264000 1405890 1286550 948040 1103820 TRUE FALSE FALSE 866969.1825 1107448.917 955369.2118 1016217.34 840348.7248 1108060.531 1054121.452 993630.6502 1030216.871 827416.2873 1.047802897 1.33844225 1.154641535 1.228181455 1.015629904 1.339181435 1.273991663 1.2008836 1.245101029 1 19.65825383 -10.25780055 5.823223741 0.999990076 1.208309387 0.262289799 0.102930966 1.27E-05 1.62E-06 0.095274388 0.023106333 5.52E-11 10.25780055 0.208319311 WSAEASGKPSPSDPGSGTATMMNS(ph)SSR ddPTM_HeLa_A485_30min_R1 3 WSAEASGKPSPSDPGSGTATMMNSSSR 27 1 Q5JRA6-4;Q5JRA6-2;Q5JRA6 Q5JRA6-4 MIA3 Melanoma inhibitory activity protein 3 1 0 WSAEASGKPSPSDPGS(0.1)GT(0.025)AT(0.1)MMNS(0.258)S(0.258)S(0.258)R;WSAEASGKPSPSDPGSGTATMMNS(0.333)S(0.333)S(0.333)R;WSAEASGKPSPSDPGSGTAT(0.005)MMNS(0.331)S(0.331)S(0.331)R ;; 126.68 3.99E-06 930750000 880770 876420 607730 854880 644460 804090 985930 1037440 688820 1518110 TRUE FALSE FALSE 1076694.248 978909.6952 832554.6168 901579.9297 580295.2996 846190.909 775278.0012 783006.2134 827059.8558 1139673.116 0.944739534 0.858939008 0.730520537 0.791086424 0.509176966 0.742485628 0.680263481 0.687044559 0.725699189 1 20.12018866 -4.584418511 1.693528806 0.709776458 0.965206363 0.252809767 0.115629532 0.622643396 2.760222733 0.030993921 0.212738282 2.60E-05 4.584418511 0.255429904 WSAEASGKPSPSDPGSGTATMMNS(ph)SSR ddPTM_HeLa_A486_30min_R1 2 WSAEASGKPSPSDPGSGTATMMNSSSR 27 1 Q5JRA6-4;Q5JRA6-2;Q5JRA6 Q5JRA6-4 MIA3 Melanoma inhibitory activity protein 3 1 0 WSAEASGKPSPSDPGSGT(0.001)AT(0.004)MMNS(0.332)S(0.332)S(0.332)R;WSAEASGKPSPSDPGSGTATMMNS(0.333)S(0.333)S(0.333)R ; 112.81 0.00015107 561270000 900710 953970 726040 297000 909520 956470 957220 875780 984430 1140920 TRUE FALSE FALSE 837574.8803 878373.9429 1007182.132 691431.0095 795439.5207 838470.4561 717713.4316 676384.0121 1069761.185 855226.2059 0.979360635 1.027066216 1.177679221 0.808477342 0.930092548 0.980407815 0.839208886 0.790883169 1.250851737 1 19.70594654 -5.260720266 24.99984792 0.930848207 1.057938436 0.140510864 0.131935211 120.7514095 4197841.981 0.035756643 0.057425208 5.49E-06 5.260720266 0.127090229 WSDSSKQDDS(ph)PSGASYGQDYDLS(ph)PSR ddPTM_HeLa_A485_30min_R1 2 WSDSSKQDDSPSGASYGQDYDLSPSR 26 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 WSDS(0.001)S(0.001)KQDDS(0.99)PS(0.006)GAS(0.002)YGQDYDLS(0.993)PS(0.007)R;WSDS(0.004)S(0.004)KQDDS(0.988)PS(0.003)GASYGQDYDLS(0.808)PS(0.192)R ; 127.78 8.76E-06 576820000 297670 340000 239342 341350 464690 442090 580470 737570 313830 557880 TRUE FALSE FALSE 363885.6646 379760.0424 327884.5657 359997.0862 418423.832 465237.1488 456447.8425 556679.801 376812.8024 418810.783 0.868854574 0.906758034 0.782894278 0.859569765 0.999076072 1.110852843 1.089866501 1.329191663 0.899720871 1 18.67593906 -5.949755427 2.586909431 1.10655119 0.85137686 0.509508335 0.106026191 0.21062658 2.860103132 0.035204491 0.039588113 1.12E-06 5.949755427 -0.255174329 WSEPWVPVEALPPS(ph)PLELSR ddPTM_HeLa_A485_30min_R1 4 WSEPWVPVEALPPSPLELSR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 WSEPWVPVEALPPS(0.937)PLELS(0.063)R;WSEPWVPVEALPPS(0.983)PLELS(0.017)R;WSEPWVPVEALPPS(0.976)PLELS(0.024)R;WSEPWVPVEALPPS(0.988)PLELS(0.012)R ;;; 154.19 3.31E-13 0 52779 60562 65977 45217 74306 54045 62424 57300 50439 60483 TRUE FALSE FALSE 64519.50646 67644.19908 90384.63783 47687.09021 66907.83374 56874.71263 49086.60244 43247.08516 60561.64465 45405.70121 1.420956064 1.489773251 1.990601079 1.05024455 1.473555786 1.252589677 1.08106694 0.952459361 1.333789437 1 15.47058584 -5.968513349 0.972916604 1.088155973 1.583375146 0.4161813 0.226917225 0.53425307 1.095641972 0.115532533 0.143197018 1.08E-06 5.968513349 0.495219174 WSEPWVPVEALPPS(ph)PLELSR ddPTM_HeLa_A486_30min_R1 3 WSEPWVPVEALPPSPLELSR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 0 WSEPWVPVEALPPS(0.965)PLELS(0.035)R;WSEPWVPVEALPPS(0.978)PLELS(0.022)R;WSEPWVPVEALPPS(0.981)PLELS(0.019)R ;; 147.16 5.37E-13 0 39750.1 49858 42976.7 16541.9 58729 45189 44349 49255 38401.7 44570 TRUE FALSE FALSE 36963.82326 45907.0705 59618.4292 38510.37918 51362.66119 39614.04063 33252.41112 38040.71173 41730.39028 33409.3819 1.106390515 1.374077217 1.784481658 1.152681582 1.537372387 1.185716059 0.995301596 1.138623631 1.249062027 1 15.02796567 -6.445929009 5.90960556 1.104774443 1.397405585 0.354879921 0.189661958 0.262925836 15.70402259 0.067829453 0.059131397 3.58E-07 6.445929009 0.292631142 WSHWILSHAVALTR ddPTM_HeLa_A485_30min_R1 2 WSHWILSHAVALTR 14 0 F8W943;P04424-2;P04424 F8W943 ASL Argininosuccinate lyase 0 0 ; ; 176.32 1.41E-10 26653000 18011.6 24154 21196.2 17318.2 24675 20089.6 28614 29719 13213.6 27437 FALSE FALSE TRUE 22018.21828 26978.60019 29037.55643 18264.24941 22218.27036 21141.46039 22500.38515 22430.36865 15865.44832 20597.46084 1.06897731 1.309802232 1.409763886 0.886723347 1.078689773 1.026411001 1.092386354 1.088987076 0.770262337 1 14.33017888 -5.264632717 24.99986259 1.004868911 1.267543252 0.502942709 0.122927653 231.9394948 1815801.812 0.034186702 0.053186702 5.44E-06 5.264632717 0.262674341 WSHWILSHAVALTR ddPTM_HeLa_A486_30min_R1 2 WSHWILSHAVALTR 14 0 F8W943;P04424-2;P04424 F8W943 ASL Argininosuccinate lyase 0 0 ; ; 193.16 1.17E-12 21259000 21474.4 23664.4 20752.4 10029 27332 22233.9 30036 28526 20636 29071 FALSE FALSE TRUE 19969.15545 21789.14676 28788.28505 23348.01884 23903.7657 19490.90748 22520.67511 22031.25252 22424.7451 21791.43238 0.91637645 0.999895114 1.321082733 1.071431122 1.09693412 0.894429845 1.033464653 1.011005249 1.029062464 1 14.41147341 -6.148749704 21.9423456 0.996617464 1.08942511 0.151581401 0.102507949 18.40161771 3548.752899 0.035491437 0.035491427 7.10E-07 6.148749704 0.092807646 WSLPSS(ph)S(ph)PK ddPTM_HeLa_A486_30min_R1 1 WSLPSSSPK 9 0 A0A087WYG4;Q6ZUA9 A0A087WYG4 MROH5 Maestro heat-like repeat family member 5 2 0 WS(0.237)LPS(0.349)S(0.426)S(0.989)PK 60.434 0.008983 0 216460 232720 91613 197770 148760 252590 327570 271500 184360 508850 TRUE FALSE FALSE 201287.2718 214278.4196 127088.0071 460418.5547 130101.1337 221428.0139 245608.5213 209685.3768 200340.4732 381430.6479 0.527716566 0.56177557 0.333187718 1.207083272 0.341087258 0.580519723 0.643913966 0.54973395 0.525234336 1 18.54106124 -11.14030273 2.266264163 1.85474817 0.589060542 0.228291826 0.228500225 11460769.53 2753885.788 50359467.86 0.055087776 7.24E-12 11.14030273 -1.265687628 WSMPELAEVEENKKMS(ph)QPGS(ph)PSPK ddPTM_HeLa_A485_30min_R1 2 WSMPELAEVEENKKMSQPGSPSPK 24 2 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 WSMPELAEVEENKKMS(0.964)QPGS(0.57)PS(0.466)PK;WS(0.012)MPELAEVEENKKMS(0.987)QPGS(0.986)PS(0.015)PK ; 66.501 0.0075612 304210000 168326 97047 52090 411120 170472 206790 489990 454710 144552 633680 TRUE FALSE FALSE 205769.538 108395.8025 71360.25865 433578.4446 153499.2091 217617.2046 385299.6336 343191.6595 173562.2605 475715.238 0.432547712 0.227858588 0.150006249 0.911424335 0.322670364 0.457452668 0.809937548 0.721422465 0.364844862 1 18.85973871 -7.940599272 0.126174216 1.353081714 7.40E-14 0.369894717 0.224677416 9.773379387 0.92904073 5.065180064 3.857238892 1.15E-08 7.940599272 -1.353081714 WSMPELAEVEENKKMS(ph)QPGS(ph)PSPK ddPTM_HeLa_A486_30min_R1 1 WSMPELAEVEENKKMSQPGSPSPK 24 2 Q14839-2;A0A2R8Y8C1;A0A0C4DGG9;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2R8Y425;A0A2R8Y445;A0A2R8YER1;Q14839;A0A2R8Y5J0;A0A2R8Y521;A0A2U3TZM0;A0A2R8YFK9;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y4X2;A0A2R8YE38;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 WSMPELAEVEENKKMS(1)QPGS(0.865)PS(0.135)PK 80.79 0.0034246 114700000 100880 79477 30404 129240 71023 148320 267190 238060 74875 314370 TRUE FALSE FALSE 93808.83294 73178.95307 42177.24305 300877.2514 62114.63308 130021.7864 200336.236 183858.9348 81365.22529 235649.7058 0.398085933 0.310541245 0.178982795 1.276798757 0.263588842 0.551758747 0.850144223 0.780221364 0.345280403 1 17.84628435 -5.242456572 0.160284509 1.001856533 8.69E-35 0.185697981 0.311957422 27.88124145 1.158528164 1.542751214 6.313727718 5.72E-06 5.242456572 -1.001856533 WSSEEERQPLLGPGLGPGLGAS(ph)WR ddPTM_HeLa_A485_30min_R1 2 WSSEEERQPLLGPGLGPGLGASWR 24 1 Q05BS2;Q96SL1-2;Q96SL1 Q05BS2 DIRC2 Disrupted in renal carcinoma protein 2 1 0 WSSEEERQPLLGPGLGPGLGAS(1)WR;WSSEEERQPLLGPGLGPGLGAS(1)WR ; 150.98 1.02E-09 245450000 57933 78421 81377 78925 85548 88315 136212 141957 81603 120214 TRUE FALSE FALSE 70819.99598 87591.65378 111481.7387 83236.4729 77030.54074 92939.03684 107109.1935 107141.8232 97979.97359 90246.86217 0.784736381 0.970578385 1.235297671 0.922319856 0.853553674 1.029831227 1.186846732 1.187208293 1.085688424 1 16.46158915 -6.557865558 6.468655025 1.128680762 0.965555118 0.280267695 0.120481777 0.25684246 31.23789478 0.048414555 0.037737451 2.77E-07 6.557865558 -0.163125644 WSSEEERQPLLGPGLGPGLGAS(ph)WR ddPTM_HeLa_A486_30min_R1 1 WSSEEERQPLLGPGLGPGLGASWR 24 1 Q05BS2;Q96SL1-2;Q96SL1 Q05BS2 DIRC2 Disrupted in renal carcinoma protein 2 1 0 WSSEEERQPLLGPGLGPGLGAS(1)WR 112.26 0.00011223 81452000 34116 38095 34334 11385 47990 36869 40959 43423 40319 56382 TRUE FALSE FALSE 31724.64458 35076.21346 47629.0443 26504.85537 41970.64671 32320.47764 30710.62498 33536.53082 43813.88338 42263.58021 0.750637888 0.829939472 1.126952427 0.627132279 0.99306889 0.764735914 0.726645136 0.793508989 1.036681776 1 15.36712736 -7.764842069 24.99326006 1.018340991 0.830211231 0.246858508 0.133859558 129.539546 951413.5783 0.109900185 0.032879547 1.72E-08 7.764842069 -0.18812976 WSVHIAMHPQVNIYSVTR ddPTM_HeLa_A485_30min_R1 4 WSVHIAMHPQVNIYSVTR 18 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 244.1 2.05E-37 337830000 163803 181971 194683 94913 207600 172727 232996 235407 99004 206477 FALSE FALSE TRUE 200240.4122 203250.9255 266704.3431 100097.8569 186930.6151 181770.7186 183214.5012 177673.0641 118873.1947 155006.0838 1.291822923 1.311244827 1.720605647 0.645767278 1.205956634 1.172668286 1.181982647 1.146232843 0.766893736 1 17.24196532 -5.251565065 24.99969672 1.044389355 1.42822647 0.465330341 0.206764033 684.2803396 1732451.605 0.056223146 0.095894228 5.60E-06 5.251565065 0.383837116 WSVHIAMHPQVNIYSVTR ddPTM_HeLa_A486_30min_R1 4 WSVHIAMHPQVNIYSVTR 18 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 224.86 2.41E-29 220101000 90726 121662 152582 42527.2 190493 135904 166655 137659 134756 128053 FALSE FALSE TRUE 84366.57591 112021.06 211665.8367 99005.47081 166599.5917 119137.5463 124956.1563 106317.0508 146436.7586 95987.69531 0.878931155 1.167035625 2.205135106 1.031439191 1.735634876 1.241175193 1.301793484 1.107611246 1.525578441 1 16.55056186 -6.416407752 22.20669378 1.246029015 1.421748921 0.047235513 0.37216512 45.91699313 9537.321626 0.130377621 0.114982091 3.83E-07 6.416407752 0.175719906 WSWAGALHHS(ph)SPGHK ddPTM_HeLa_A485_30min_R1 1 WSWAGALHHSSPGHK 15 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 WSWAGALHHS(0.732)S(0.268)PGHK 179.14 7.31E-18 472460000 158790 280590 251560 90543 349040 215180 219490 250970 230960 158160 TRUE FALSE FALSE 194112.2877 313402.5597 344622.5123 95489.13482 314288.352 226446.4921 172594.1684 189419.214 277311.5535 118733.6227 1.63485526 2.63954348 2.902484607 0.804229945 2.647003813 1.907180855 1.453625051 1.595329189 2.335577296 1 16.85736901 -10.3056346 0.148911018 4.40E-12 2.467129392 0.189910842 0.615211323 54.63064384 1.508423168 26.35750006 4.217351796 4.95E-11 10.3056346 2.467129392 WSWAGALHHS(ph)SPGHK ddPTM_HeLa_A486_30min_R1 1 WSWAGALHHSSPGHK 15 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 WSWAGALHHS(0.75)S(0.25)PGHK 225.11 6.52E-34 520870000 264400 238170 232880 26633 324690 157080 168820 174610 207220 70059 TRUE FALSE FALSE 245866.9254 219296.5418 323057.3727 62002.96996 283964.3526 137701.0667 126579.4504 134855.1147 225181.9964 52515.77039 4.68177318 4.175822618 6.151625889 1.180654297 5.407220545 2.622089815 2.41031312 2.567897485 4.287892851 1 15.68046311 -2.490131761 0.096992281 1.20E-10 11.54863291 0.326369948 1.362853314 118.4588397 1.137006049 22.05099816 182.9202479 0.003234955 2.490131761 11.54863291 WSWAGALHHSS(ph)PGHK ddPTM_HeLa_A485_30min_R1 1 WSWAGALHHSSPGHK 15 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 WSWAGALHHS(0.004)S(0.996)PGHK 258.38 1.72E-50 339020000 261600 437560 405950 70304 596350 303160 339880 361520 352970 182940 TRUE FALSE FALSE 319792.0175 488728.8357 556127.798 74144.5295 536975.3001 319032.9888 267261.8614 272856.6532 423807.8414 137336.4248 2.328530235 3.558625009 4.049383104 0.539875198 3.909926307 2.323003452 1.946037709 1.986775567 3.085909962 1 17.06735479 -9.328797754 0.163607244 3.34E-12 3.417430433 0.199289174 1.00316788 27.62362188 1.325242037 21.63272166 5.930517159 4.69E-10 9.328797754 3.417430433 WSWAGALHHSS(ph)PGHK ddPTM_HeLa_A486_30min_R1 1 WSWAGALHHSSPGHK 15 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 WSWAGALHHS(0.2)S(0.8)PGHK 199.09 2.03E-25 405890000 364210 342250 318760 21807 436130 203950 228040 232260 291810 84122 TRUE FALSE FALSE 338680.7598 315128.8635 442192.4087 50767.79806 381426.5086 178788.7226 170981.98 179379.4682 317104.3258 63057.30366 5.370999712 4.997499818 7.012548635 0.805105755 6.048887068 2.835337261 2.711533322 2.844705653 5.028827865 1 15.94437586 -1 0.095056297 1.14E-11 16.11841135 0.302523024 1.682458586 178.3025571 1.212525239 25.06227317 374.5384422 0.1 1 16.11841135 WSWGGSLHGS(ph)PSIHSADPDRR ddPTM_HeLa_A486_30min_R1 1 WSWGGSLHGSPSIHSADPDRR 21 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 WSWGGS(0.001)LHGS(0.839)PS(0.155)IHS(0.004)ADPDRR 158.05 2.12E-10 215180000 131380 132110 115250 27474 158000 73320 94460 92154 121390 69057 TRUE FALSE FALSE 122170.9404 121641.1225 159877.8865 63960.86046 138182.1667 64274.52386 70825.1089 71172.54591 131912.1829 51764.67771 2.360121725 2.349886599 3.088551761 1.235608204 2.669429673 1.241667614 1.368213076 1.37492493 2.548304921 1 15.65968037 -5.642158567 1.164170388 1.568503727 2.533262173 0.297601038 0.597154994 0.621486538 1.759497351 0.234106441 0.394142182 2.28E-06 5.642158567 0.964758446 WSWGGSLHGSPS(ph)IHSADPDRR ddPTM_HeLa_A485_30min_R1 1 WSWGGSLHGSPSIHSADPDRR 21 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 WSWGGSLHGS(0.006)PS(0.828)IHS(0.165)ADPDRR 148.53 1.29E-09 285780000 58280 106270 111890 68499 129970 92920 96972 106530 99046 103430 TRUE FALSE FALSE 71244.18494 118697.3521 153282.7671 72240.92692 117029.7304 97785.14752 76253.14001 80403.35047 118923.6237 77646.80449 0.917541751 1.528683026 1.97410271 0.930378621 1.507206011 1.259358298 0.982051232 1.035501087 1.53159714 1 16.24463893 -6.521839631 24.66251584 1.137454181 1.388673263 0.105985715 0.318930415 75.46099596 1791113.236 0.120932763 0.094938246 3.01E-07 6.521839631 0.251219082 WSWGGSLHGSPS(ph)IHSADPDRR ddPTM_HeLa_A486_30min_R1 1 WSWGGSLHGSPSIHSADPDRR 21 1 Q14244-5;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 WSWGGSLHGS(0.011)PS(0.987)IHS(0.002)ADPDRR 157.38 2.89E-10 173660000 117260 116650 102020 44370 144380 93017 99581 108520 108750 133630 TRUE FALSE FALSE 109040.6795 107406.2292 141524.8762 103295.6023 126270.5141 81541.50827 74664.78054 83812.36497 118176.5376 100168.1782 1.088576048 1.072258986 1.412872618 1.031221733 1.260585112 0.814046035 0.745394215 0.836716475 1.179781241 1 16.61206474 -6.262352815 24.99996386 0.894370282 1.172938716 0.419449091 0.150723002 79.33260581 2171243.544 0.051978325 0.048489291 5.47E-07 6.262352815 0.278568434 WTDGS(ph)LSPPAKEPLASDSR ddPTM_HeLa_A485_30min_R1 1 WTDGSLSPPAKEPLASDSR 19 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 WT(0.003)DGS(0.556)LS(0.438)PPAKEPLAS(0.003)DSR 42.705 0.032077 594860000 40907 69446 30298 56401 70100 61741 66954 85459 51209 102250 TRUE FALSE FALSE 50006.62102 77567.1056 41506.491 59482.04382 63120.59786 64973.66329 52648.73094 64500.04626 61486.17658 76760.95677 0.651459064 1.010502069 0.540723992 0.774899719 0.822300822 0.846441551 0.685879035 0.840271526 0.801008471 1 16.22808507 -10.51635122 0.330164686 1.166582351 0.759425736 0.253712139 0.119534165 33.02665325 2.157957314 4.653235453 0.103430242 3.05E-11 10.51635122 -0.407156615 WTDGS(ph)LSPPAKEPLASDSR ddPTM_HeLa_A486_30min_R1 1 WTDGSLSPPAKEPLASDSR 19 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 WT(0.005)DGS(0.527)LS(0.467)PPAKEPLASDSR 51.827 0.017949 1257100000 71306 60819 37080 17589 80759 49525 88122 76513 34375 75797 TRUE FALSE FALSE 66307.81762 55999.48094 51438.36904 40948.0809 70629.45317 43415.10903 66072.94354 59092.66017 37354.65268 56816.93784 1.167043141 0.985612444 0.905335116 0.720702003 1.243105592 0.764122649 1.162909267 1.04005359 0.657456281 1 15.79403346 -4.288457955 3.395560932 0.943375177 1.189452526 0.129945356 0.177664622 0.590168063 11.66686542 0.04334921 0.361928602 5.15E-05 4.288457955 0.246077349 WTKPSSFS(ph)DSER ddPTM_HeLa_A485_30min_R1 6 WTKPSSFSDSER 12 1 H0Y9B7;Q8NC56-2;Q8NC56 H0Y9B7 LEMD2 LEM domain-containing protein 2 1 0 WTKPS(0.013)S(0.043)FS(0.921)DS(0.023)ER;WT(0.002)KPS(0.176)S(0.119)FS(0.699)DS(0.004)ER;WTKPS(0.013)S(0.04)FS(0.945)DS(0.002)ER;WTKPSS(0.004)FS(0.992)DS(0.004)ER;WTKPS(0.001)S(0.016)FS(0.972)DS(0.012)ER;WTKPSSFS(0.999)DSER ;;;;; 183.36 3.29E-13 3753070000 3474390 3345200 1864410 2739920 2313880 2854820 3135290 5237330 2510540 6901660 TRUE FALSE FALSE 4247256.069 3736392.041 2554132.844 2889594.892 2083501.983 3004293.961 2465409.679 3952866.606 3014382.35 5181203.178 0.819743199 0.721143702 0.492961337 0.557707311 0.402127056 0.579844846 0.47583729 0.762924454 0.58179196 1 22.30485573 -8.757243369 0.920780979 1.002766461 0.582493659 0.474924676 0.126036338 3.268198062 3.24554626 0.154641642 0.042195843 1.75E-09 8.757243369 -0.420272802 WTKPSSFS(ph)DSER ddPTM_HeLa_A486_30min_R1 4 WTKPSSFSDSER 12 1 H0Y9B7;Q8NC56-2;Q8NC56 H0Y9B7 LEMD2 LEM domain-containing protein 2 1 0 WTKPS(0.004)S(0.011)FS(0.973)DS(0.011)ER;WTKPS(0.007)S(0.027)FS(0.936)DS(0.03)ER;WTKPSS(0.001)FS(0.996)DS(0.003)ER;WTKPSS(0.001)FS(0.999)DSER ;;; 193.64 7.97E-14 1964220000 3587380 2885760 2146560 850297 3162490 2550470 2713090 2351790 2659810 3058010 TRUE FALSE FALSE 3335923.187 2657081.868 2977765.519 1979534.388 2765821.015 2235818.943 2034246.186 1816338.756 2890364.472 2292264.392 1.455295994 1.15915157 1.299049765 0.863571582 1.206589007 0.975375681 0.887439596 0.792377512 1.260921071 1 21.12834202 -3.639966741 0.581223652 0.973894883 2.160569169 0.448594945 0.153416894 6.372217649 0.967033273 0.073877539 5.947810683 0.000229104 3.639966741 1.186674286 WTPKS(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_HeLa_A485_30min_R1 2 WTPKSPLDPDSGLLSCTLPNGFGGQSGPEGER 32 1 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 WT(0.02)PKS(0.978)PLDPDS(0.002)GLLSCTLPNGFGGQSGPEGER;WT(0.226)PKS(0.752)PLDPDS(0.013)GLLS(0.006)CT(0.003)LPNGFGGQSGPEGER ; 99.228 8.29E-05 1584530000 102211 102879 97900 132178 144960 110680 150092 135006 104512 163055 TRUE FALSE FALSE 124947.4843 114909.8041 134117.284 139398.5494 130527.2734 116475.0337 118023.6181 101895.5668 125486.5998 122408.3893 1.020742819 0.938741248 1.095654348 1.138798985 1.066326207 0.951528194 0.964179161 0.832423067 1.025147055 1 16.90134291 -6.278536264 9.77453634 0.944710468 1.053007286 0.335350076 0.067834158 0.442131787 243.3230878 0.024866459 0.022422955 5.27E-07 6.278536264 0.108296818 WTPKS(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_HeLa_A486_30min_R1 2 WTPKSPLDPDSGLLSCTLPNGFGGQSGPEGER 32 1 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 WT(0.006)PKS(0.994)PLDPDSGLLSCTLPNGFGGQSGPEGER;WT(0.007)PKS(0.993)PLDPDS(0.001)GLLSCTLPNGFGGQSGPEGER ; 253.64 8.85E-64 2096900000 547480 519340 314606 222462 601170 590180 700210 628660 413160 705170 TRUE FALSE FALSE 509104.4792 478185.607 436429.8686 517902.7786 525765.6529 517369.5921 525010.0519 485527.8416 448973.0415 528590.8421 0.963135262 0.904642247 0.825647805 0.979780082 0.994655244 0.978771388 0.993225781 0.918532451 0.849377261 1 19.0117919 -5.306584651 24.99978929 0.959508818 0.898491609 0.21952266 0.053032533 687.3751356 380641.5569 0.015795059 0.023427956 4.94E-06 5.306584651 -0.061017209 WVDPNSPVLLEDPVLCALAK(ac)K ddPTM_HeLa_A486_30min_R1 1 WVDPNSPVLLEDPVLCALAKK 21 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 1 WVDPNSPVLLEDPVLCALAK(1)K 139 2.98E-11 3666900 4087.4 4988.7 3660.1 1954.1 5781.7 5295.8 6469.2 5933.4 5691.2 6258.4 FALSE TRUE FALSE 3800.894367 4593.377243 5077.388741 4549.243555 5056.505274 4642.45804 4850.537736 4582.494345 6184.517798 4691.255905 0.810208278 0.979135936 1.082309054 0.969728288 1.077857481 0.989598123 1.033952919 0.97681611 1.31830749 1 12.19575849 -4.313003757 2.520307659 1.049894137 0.772693938 0.374294138 0.096122897 0.467423931 4.08517838 0.023960188 0.263451596 4.86E-05 4.313003757 -0.277200199 WVSELS(ph)YVEEKEQWQEQINQLKK ddPTM_HeLa_A486_30min_R1 1 WVSELSYVEEKEQWQEQINQLKK 23 2 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 WVS(0.159)ELS(0.836)Y(0.005)VEEKEQWQEQINQLKK 71.528 0.0033865 68140000 20450 25709 12189 24463 30020 33215 39591 41196 16456 34467 TRUE FALSE FALSE 19016.5606 23671.72521 16908.90723 56951.10029 26254.61167 29117.27101 29684.91305 31816.5701 17882.41933 25836.23886 0.736042143 0.916221798 0.654464736 2.204310798 1.016193256 1.126993413 1.148964182 1.231470659 0.692144837 1 14.65710844 WVTFLLK ddPTM_HeLa_A486_30min_R1 1 WVTFLLK 7 0 Q9NZM1-5;Q9NZM1-2;Q9NZM1-6;Q9NZM1-3;Q9NZM1;Q9NZM1-8;Q9NZM1-7 Q9NZM1-5 MYOF Myoferlin 0 0 107.43 0.020379 0 6553.2 5389.1 4385.4 1842 6247.8 6109.4 5321.5 4974.9 4725.3 8093.6 FALSE FALSE TRUE 6093.854521 4962.048089 6083.544325 4288.26909 5464.142666 5355.684344 3990.004415 3842.223871 5134.892809 6066.90988 1.004441246 0.817887226 1.002741832 0.706829205 0.90064675 0.882769721 0.65766667 0.633308216 0.846376971 1 12.56674617 -4.99488684 0.728177106 0.777914973 0.982994426 0.14068506 0.123879887 2.259978624 1.721186491 0.058762744 0.32696309 1.01E-05 4.99488684 0.205079453 WWHTGALYR ddPTM_HeLa_A485_30min_R1 4 WWHTGALYR 9 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;H0YFS2;F5H867 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ;;; ;;; 167.23 1.48E-06 480349000 228221 266113 171779 201913 174734 232603 284234 284417 188489 384040 FALSE FALSE TRUE 278987.9741 297232.6005 235327.2004 212942.9959 157336.8694 244781.7334 223505.0839 214663.2848 226317.0134 288305.8957 0.967680433 1.030962616 0.816241374 0.738600906 0.545728935 0.849034782 0.775235912 0.744567794 0.784989196 1 18.13724081 -4.864717056 4.286238921 0.760720629 0.999181255 0.392610374 0.107443387 0.185617025 6.007202572 0.027844855 0.063283234 1.37E-05 4.864717056 0.238460626 WWHTGALYR ddPTM_HeLa_A486_30min_R1 2 WWHTGALYR 9 0 F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4;H0YFS2;F5H867 F5GZS6 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ; ; 112.84 0.0027994 226764000 84431 92496 79710 27033.6 135926 92719 88741 92771 93781 115989 FALSE FALSE TRUE 78512.8229 85166.2801 110575.8467 62935.587 118876.8936 81280.27248 66537.06319 71649.06848 101910.0126 86944.59944 0.903021273 0.979546523 1.271796609 0.723858496 1.367271738 0.934851308 0.765281152 0.824077274 1.172125851 1 16.4078088 -6.492240875 24.93449521 0.914904328 1.050690414 0.06653983 0.196682294 1597.460308 1300087.961 0.06727916 0.059260843 3.22E-07 6.492240875 0.135786086 WYNHIK ddPTM_HeLa_A485_30min_R1 2 WYNHIK 6 0 P24534;C9JZW3;F2Z2G2 P24534 EEF1B2 Elongation factor 1-beta 0 0 ; ; 97.306 0.012145 34257000 33236 39777 34768 33917 50379 40837 50905 57486 35287 46780 FALSE FALSE TRUE 40629.23354 44428.57414 47630.13002 35769.79983 45363.08987 42975.16217 40028.73089 43387.46837 42368.77723 35118.60692 1.156914727 1.265100698 1.356264789 1.018542675 1.291710972 1.223714889 1.139815454 1.23545528 1.206448118 1 15.099948 -12.95132932 0.337965403 1.81E-09 1.220335707 0.342710298 0.087397632 200.4279678 3.383411881 141.3008587 0.070397831 1.12E-13 12.95132932 1.220335705 WYQMGAYQPFFR ddPTM_HeLa_A485_30min_R1 2 WYQMGAYQPFFR 12 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 203.35 5.84E-14 63380000 25753 39681 43126 29821 53029 35625 48306 46911 39072 46756 FALSE FALSE TRUE 31481.666 44321.34777 59080.10202 31450.04572 47749.24656 37490.26991 37985.02848 35406.0037 46913.39201 35100.58968 0.896898493 1.262695247 1.683165513 0.895997646 1.360354541 1.068080914 1.082176363 1.008701108 1.336541421 1 15.09920765 -6.29684481 24.45751953 1.098586038 1.229955234 0.064433792 0.228374921 1394.451261 963260.4326 0.079915733 0.070482043 5.05E-07 6.29684481 0.131369196 WYQMGAYQPFFR ddPTM_HeLa_A486_30min_R1 2 WYQMGAYQPFFR 12 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 262.2 3.23E-39 62144000 48182 54025 48109 14149.7 60279 45695 53519 53611 48514 53512 FALSE FALSE TRUE 44804.69061 49743.86224 66738.0932 32941.21669 52718.24574 40057.61549 40127.98013 41404.94562 52719.23258 40112.2469 1.116982819 1.240116575 1.663783467 0.821225916 1.314268081 0.998638037 1.00039223 1.032227034 1.314292683 1 15.29175516 -5.272719602 24.98983478 1.074527405 1.330276539 0.298583461 0.190413629 919.1391558 2036228.816 0.052452013 0.078615109 5.34E-06 5.272719602 0.255749134 Y(ph)ARY(ph)S(ph)PR ddPTM_HeLa_A486_30min_R1 1 YARYSPR 7 1 I3L267;Q86WC6 I3L267 PPP1R27 Protein phosphatase 1 regulatory subunit 27 3 0 Y(1)ARY(1)S(1)PR 58.433 0.0278 142350000 5539.6 5812 8974.7 0 5572.6 4515.8 5878.7 6539.2 6965.4 3301.5 TRUE FALSE FALSE 5151.302647 5351.435953 12449.94419 0 4873.632546 3958.686509 4407.787081 5050.36691 7569.16648 2474.782911 2.081516978 2.162386014 5.03072174 0 1.969317197 1.599609603 1.781080297 2.040731285 3.058517354 1 11.27308626 -5.270580405 24.99978505 1.697437844 2.998626092 0.283844833 1.053488956 924.0199325 2527100.122 0.295020182 0.444597583 5.36E-06 5.270580405 1.301188249 Y(ph)ATPQVIQAPGPR ddPTM_HeLa_A485_30min_R1 2 YATPQVIQAPGPR 13 0 A0A5F9ZHD0;A0A5F9ZHP4;C9J1X3;A0A5F9ZI29;A0A5F9ZGX5;A0A5F9ZHJ2;A0A499FJ16;Q07912;Q07912-3 A0A5F9ZHD0 TNK2 Activated CDC42 kinase 1 1 0 Y(0.99)AT(0.01)PQVIQAPGPR;Y(1)ATPQVIQAPGPR ; 181.53 3.62E-17 1278400000 131424 152625 145148 160417 185947 129922 213440 174688 145365 241160 TRUE FALSE FALSE 160658.8154 170473.1661 198844.2853 169180.1745 167433.4638 136724.515 167836.8004 131845.4941 174538.4221 181043.2502 0.887405718 0.941615696 1.098324765 0.934473803 0.924825773 0.755203604 0.927053619 0.728254127 0.964070309 1 17.46597486 -5.883954216 3.123024207 0.85999535 0.97457625 0.153546889 0.094601193 0.368471038 7.174325643 0.029824617 0.034638649 1.31E-06 5.883954216 0.1145809 Y(ph)ATPQVIQAPGPR ddPTM_HeLa_A486_30min_R1 2 YATPQVIQAPGPR 13 0 A0A5F9ZHD0;A0A5F9ZHP4;C9J1X3;A0A5F9ZI29;A0A5F9ZGX5;A0A5F9ZHJ2;A0A499FJ16;Q07912;Q07912-3 A0A5F9ZHD0 TNK2 Activated CDC42 kinase 1 1 0 Y(1)ATPQVIQAPGPR;Y(1)ATPQVIQAPGPR ; 243.82 3.66E-35 989090000 144363 143859 119994 66568 190031 156699 186991 190537 143864 176485 TRUE FALSE FALSE 134243.8992 132459.0889 166458.8904 154973.6682 166195.54 137367.0706 140203.874 147155.8845 156334.2474 132292.0073 1.014754421 1.001262976 1.258268687 1.171451483 1.256278013 1.038362584 1.059806083 1.112356578 1.18173615 1 17.01336637 -9.419120491 14.09816474 0.999961173 1.122959333 0.142954432 0.089254896 0 0 0.091661266 0.022231122 3.81E-10 9.419120491 0.12299816 Y(ph)FASIHPAST(ph)KIS(ph)EDAMSTASSTY ddPTM_HeLa_A486_30min_R1 1 YFASIHPASTKISEDAMSTASSTY 24 1 Q8TF05-2;Q8TF05 Q8TF05-2 PPP4R1 Serine/threonine-protein phosphatase 4 regulatory subunit 1 3 0 Y(0.966)FAS(0.326)IHPAS(0.44)T(0.458)KIS(0.758)EDAMS(0.006)T(0.006)AS(0.006)S(0.01)T(0.01)Y(0.012) 40.094 0.025227 4991600000 2537700 2972900 2451600 138630 3377900 2683700 1969900 2791900 2696200 880450 TRUE FALSE FALSE 2359820.335 2737316.577 3400925.176 322737.646 2954212.284 2352612.38 1477010.185 2156245.317 2929908.787 659979.5892 3.575595932 4.147577624 5.153076294 0.489011556 4.476217648 3.564674451 2.237963429 3.267139396 4.439393028 1 19.33206188 -10.8424358 2.67556049 0.071213879 3.452576722 0.260696822 1.253653182 8556554.632 5323639.278 50614693.33 0.308227746 1.44E-11 10.8424358 3.381362843 Y(ph)FHTS(ph)VS(ph)R ddPTM_HeLa_A485_30min_R1 1 YFHTSVSR 8 0 A0A140TA02;A0A1W2PNR7;S6AU73;P13747 A0A140TA02 HLA-B;HLA-E "HLA class I histocompatibility antigen, alpha chain E" 3 0 Y(0.502)FHT(0.502)S(0.996)VS(1)R 76.221 0.035312 529520000 14421 31277 54401 12201 33927 32726 25200 32056 40996 19014 TRUE FALSE FALSE 17628.9017 34934.57308 74526.19371 12867.50974 30549.10876 34439.48276 19815.81413 24194.21574 49223.52116 14274.15973 1.235022028 2.447399619 5.22105645 0.901454795 2.140168622 2.412715243 1.388229816 1.694966023 3.448435642 1 13.8011182 Y(ph)FQSPS(ph)RS(ph)R ddPTM_HeLa_A486_30min_R1 1 YFQSPSRSR 9 1 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 0 Y(0.575)FQS(0.436)PS(0.989)RS(1)R 44.616 0.0098574 0 250500 263380 178290 57533 189370 178600 182770 165910 184330 260070 TRUE FALSE FALSE 232941.2436 242508.8096 247328.6628 133939.7316 165617.4488 156566.1479 137039.0129 128135.9148 200307.8728 194946.7792 1.194896599 1.243974435 1.268698379 0.687057935 0.849552116 0.803122516 0.702956024 0.657286647 1.027500293 1 17.57272079 -5.254935009 24.96042503 0.799805993 1.236668301 0.722703119 0.11816769 244.2617922 937348.4697 0.031178928 0.052405457 5.56E-06 5.254935009 0.436862308 Y(ph)KS(ph)RDIWAKIPSK ddPTM_HeLa_A485_30min_R1 3 YKSRDIWAKIPSK 13 3 Q7Z6L1-3;Q7Z6L1;Q7Z6L1-2;Q7Z6L1-4 Q7Z6L1-3 TECPR1 Tectonin beta-propeller repeat-containing protein 1 2 0 Y(1)KS(1)RDIWAKIPSK;Y(1)KS(1)RDIWAKIPSK;Y(1)KS(1)RDIWAKIPSK ;; 71.98 0.0034169 1694060000 2187140 4095020 3573060 542090 4951500 4264020 3208190 4754210 3873010 989490 TRUE FALSE FALSE 2673661.747 4573896.967 4894883.581 571703.0041 4458511.274 4487277.494 2522733.998 3588232.543 4650287.582 742828.3532 3.599299537 6.157407626 6.589521738 0.769630025 6.002074712 6.04079997 3.396119692 4.830500246 6.260245131 1 19.50266936 Y(ph)LLT(ph)EAR ddPTM_HeLa_A485_30min_R1 1 YLLTEAR 7 0 C9JHT8;Q96HI0-2;Q96HI0 C9JHT8 SENP5 Sentrin-specific protease 5 2 0 Y(1)LLT(1)EAR 74.255 0.01144 0 98376 119670 68835 147070 62666 140330 95390 144500 123330 162320 TRUE FALSE FALSE 120259.4018 133664.3655 94299.93096 155104.0617 56426.75301 147677.4618 75009.14724 109061.1484 148081.1998 121856.6113 0.986892714 1.096898758 0.773859785 1.27284076 0.46305861 1.21189536 0.615552545 0.894995744 1.215208582 1 16.894825 -4.726106246 24.99932597 0.921448947 1.041895744 0.029138394 0.251501041 703.6861345 497871.0879 0.059692403 0.157918194 1.88E-05 4.726106246 0.120446797 Y(ph)LQT(ph)HEY(ph)LLDVDLWR ddPTM_HeLa_A486_30min_R1 1 YLQTHEYLLDVDLWR 15 0 R4GMP4;A0A1X7SBZ7;Q6ZR37 R4GMP4 PLEKHG7 Pleckstrin homology domain-containing family G member 7 3 0 Y(1)LQT(1)HEY(1)LLDVDLWR 41.092 0.03058 24681000 1738.1 1681.4 3108 1899.3 2398.3 3028.9 1946.6 2022 4064.8 3545.7 TRUE FALSE FALSE 1616.268166 1548.15974 4311.500835 4421.666385 2097.482851 2655.225114 1459.540091 1561.63474 4417.140137 2657.833641 0.608114872 0.582489331 1.622186117 1.663635495 0.789170104 0.999018551 0.549146519 0.58755925 1.661932511 1 11.37603509 Y(ph)LRAFLPES(ph)GFT(ph)ILPCTRY(ph)SMETNGAK ddPTM_HeLa_A486_30min_R1 1 YLRAFLPESGFTILPCTRYSMETNGAK 27 2 Q86Y97 Q86Y97 SUV420H2 Histone-lysine N-methyltransferase SUV420H2 4 0 Y(0.7)LRAFLPES(0.616)GFT(0.684)ILPCT(0.684)RY(0.7)S(0.616)METNGAK 47.803 0.014903 601600000 150950 145340 56937 48515 100660 175200 183840 175410 93032 227090 TRUE FALSE FALSE 140369.1845 133822.7291 78984.53123 112945.3718 88034.28418 153585.6053 137841.2875 135472.9722 101096.0887 170225.1859 0.82460879 0.78615117 0.464000264 0.663505645 0.517163684 0.902249597 0.809758479 0.795845641 0.593896186 1 17.37708498 -6.269589234 24.99554472 0.80692836 0.648885873 0.267761051 0.139048131 966.2398518 2963442.517 0.049482041 0.044380071 5.38E-07 6.269589234 -0.158042487 Y(ph)LRAFLPESGFTILPCT(ph)RY(ph)S(ph)METNGAK ddPTM_HeLa_A485_30min_R1 1 YLRAFLPESGFTILPCTRYSMETNGAK 27 2 Q86Y97 Q86Y97 SUV420H2 Histone-lysine N-methyltransferase SUV420H2 4 0 Y(0.605)LRAFLPES(0.468)GFT(0.518)ILPCT(0.809)RY(0.814)S(0.782)MET(0.004)NGAK 44.916 0.018931 256880000 26159 15149 10904 36573 15844 26784 26180 21228 21507 50414 TRUE FALSE FALSE 31977.9793 16920.54377 14937.84335 38570.89038 14266.51573 28186.36882 20586.42913 16021.79972 25823.25763 37846.7176 0.844934021 0.447080879 0.394693234 1.019134362 0.376955166 0.744750684 0.543942261 0.42333393 0.682311684 1 15.20788056 -8.023967035 23.25234564 1.00000001 0.594271112 0.261339227 0.201608483 1124.795352 1091254.832 0.185209881 0.047820986 9.46E-09 8.023967035 -0.405728898 Y(ph)LRAFLPESGFTILPCT(ph)RY(ph)S(ph)METNGAK ddPTM_HeLa_A486_30min_R1 4 YLRAFLPESGFTILPCTRYSMETNGAK 27 2 Q86Y97 Q86Y97 SUV420H2 Histone-lysine N-methyltransferase SUV420H2 4 0 Y(0.619)LRAFLPES(0.551)GFT(0.623)ILPCT(0.756)RY(0.751)S(0.699)MET(0.002)NGAK;Y(0.552)LRAFLPES(0.413)GFT(0.478)ILPCT(0.794)RY(0.891)S(0.869)MET(0.003)NGAK;Y(0.574)LRAFLPES(0.474)GFT(0.525)ILPCT(0.816)RY(0.82)S(0.79)MET(0.002)NGAK;Y(0.58)LRAFLPES(0.509)GFT(0.555)ILPCT(0.589)RY(0.891)S(0.876)MET(0.001)NGAK ;;; 47.719 0.01526 7485170000 1355895 1286955 617990 720254.5 1118226 1765875 2067349 1830654 899599 2044039 TRUE FALSE FALSE 1260853.762 1184971.999 857292.2783 1676788.876 977967.668 1548019.297 1550076.414 1413854.047 977576.9656 1532198.33 0.822905062 0.773380297 0.559517826 1.094368035 0.638277466 1.010325665 1.011668257 0.922761773 0.638022472 1 20.54717162 -5.25478043 24.99992303 0.89705434 0.724079003 0.220349815 0.157955286 874.1259005 3281752.251 0.042356745 0.07125025 5.56E-06 5.25478043 -0.172975338 Y(ph)MQNLT(ph)VEQPIEVK ddPTM_HeLa_A485_30min_R1 1 YMQNLTVEQPIEVK 14 0 A0A087WYF1;A0A087WX80;P24043 A0A087WYF1 LAMA2 Laminin subunit alpha-2 2 0 Y(1)MQNLT(1)VEQPIEVK 50.843 0.0066821 0 14720 7876.1 14272 27396 29224 13212 20812 16764 19387 41801 TRUE FALSE FALSE 17994.41322 8797.141382 19551.80671 28892.57411 26314.35595 13903.75989 16365.34618 12652.60272 23277.79307 31380.77999 0.573421477 0.280335332 0.623050374 0.92070924 0.838550092 0.443066103 0.521508585 0.403195928 0.741785038 1 14.93759359 -8.009197177 22.28853749 1.000000019 0.580740932 0.3448973 0.181139797 118.8801227 288098.7772 0.193039047 0.049842466 9.79E-09 8.009197177 -0.419259087 Y(ph)MQNLT(ph)VEQPIEVK ddPTM_HeLa_A486_30min_R1 1 YMQNLTVEQPIEVK 14 0 A0A087WYF1;A0A087WX80;P24043 A0A087WYF1 LAMA2 Laminin subunit alpha-2 2 0 Y(1)MQNLT(1)VEQPIEVK 49.5 0.0074171 0 5836.4 7474.8 8371.3 5217.7 13439 12260 10434 10084 7367.5 10098 TRUE FALSE FALSE 5427.298499 6882.469625 11612.89155 12147.06929 11753.35531 10747.48585 7823.30284 7788.093332 8006.120832 7569.395073 0.717005579 0.909249624 1.534190175 1.604760905 1.552746976 1.419860603 1.033543997 1.028892436 1.057696256 1 12.88596229 -6.776887392 23.89200701 1.03244065 1.309744947 0.18074545 0.26870543 280.1722922 433310.1017 0.127659517 0.086473609 1.67E-07 6.776887392 0.277304297 Y(ph)REVVDSR ddPTM_HeLa_A485_30min_R1 1 YREVVDSR 8 1 A0A494C0A7;Q5H9K5-2;Q5H9K5 A0A494C0A7 ZMAT1 Zinc finger matrin-type protein 1 1 0 Y(1)REVVDSR 57.59 0.028417 48703000 31029 61360 62624 9627.4 29578 96381 23543 63258 73944 10087 TRUE FALSE FALSE 37931.294 68535.51824 85791.2236 10153.32048 26633.11047 101427.3601 18512.84572 47743.87632 88783.88255 7572.496537 5.009087005 9.050584295 11.3293183 1.340815467 3.517084535 13.39417715 2.444747994 6.304905665 11.7245194 1 12.8865533 -4.000000976 17.73775884 6.814979851 3.204369979 0.012375005 4.321831521 106514374 3613872246 1.051962371 7853538359 1.00E-04 4.000000976 -3.610609873 Y(ph)S(ph)NCLHY(ph)HER ddPTM_HeLa_A485_30min_R1 1 YSNCLHYHER 10 0 Q15973-4;Q15973-1;Q15973 Q15973-4 ZNF124 Zinc finger protein 124 3 0 Y(1)S(1)NCLHY(1)HER 44.616 0.031659 55558000 9988.2 29557 34244 5418.4 26949 20754 17198 25737 30183 8017.9 TRUE FALSE FALSE 12210.04063 33013.43404 46912.28061 5714.393472 24265.86294 21840.64735 13523.50681 19424.9604 36240.45125 6019.185089 2.028520547 5.484701592 7.793792668 0.949363309 4.031419965 3.628505691 2.246733836 3.227174461 6.020823535 1 12.55535246 -5.269571178 24.99700072 3.143579143 5.140574654 0.198926768 1.906978256 1008.120875 3098944.262 0.53081412 0.802870672 5.38E-06 5.269571178 1.996995511 Y(ph)SPSQNS(ph)PIHHIPSR ddPTM_HeLa_A486_30min_R1 1 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 Y(0.482)S(0.291)PS(0.255)QNS(0.972)PIHHIPSR 167.05 2.78E-12 2045500000 508750 657250 444750 124910 539170 673740 570320 548860 621630 469420 TRUE FALSE FALSE 473089.2522 605167.1163 616969.1108 290796.7926 471542.271 590620.8089 427619.9038 423896.5595 675513.3889 351874.1766 1.344484147 1.719839524 1.753379906 0.826422659 1.340087743 1.67850001 1.215263672 1.204682207 1.919758351 1 18.42470012 -10.47131321 3.010593018 0.988905897 1.433689129 0.154791119 0.310793352 63829200.54 73455964.32 5905711.323 0.07998977 3.38E-11 10.47131321 0.444783232 Y(ph)T(ph)HKLAMER ddPTM_HeLa_A485_30min_R1 1 YTHKLAMER 9 1 Q8TCS8 Q8TCS8 PNPT1 "Polyribonucleotide nucleotidyltransferase 1, mitochondrial" 2 0 Y(1)T(1)HKLAMER 66.595 0.0073083 498420000 111360 77358 137760 310000 315160 115030 210060 177860 150970 420060 TRUE FALSE FALSE 136131.6478 86404.34517 188723.1567 326934.515 283781.5638 121052.7929 165178.965 134239.5561 181268.2942 315346.7726 0.43168873 0.273997874 0.598462306 1.036746031 0.899903181 0.383871989 0.523801032 0.425688695 0.5748221 1 18.26657964 -11.24390539 2.076640181 2.360848866 0.576159304 0.250731696 0.221806209 10185786.41 1562391.871 65084766.51 0.064630306 5.70E-12 11.24390539 -1.784689562 Y(ph)T(ph)HKLAMER ddPTM_HeLa_A486_30min_R1 1 YTHKLAMER 9 1 Q8TCS8 Q8TCS8 PNPT1 "Polyribonucleotide nucleotidyltransferase 1, mitochondrial" 2 0 Y(1)T(1)HKLAMER 57.019 0.015078 568110000 138680 329500 293330 230940 570270 474400 566640 544520 298030 311620 TRUE FALSE FALSE 128959.2481 303389.22 406915.2316 537639.9911 498741.419 415873.3513 424860.6787 420544.6828 323863.4804 233588.3237 0.552079171 1.298820143 1.742018716 2.301656104 2.135129921 1.780368748 1.818843819 1.800366885 1.386471187 1 17.83360863 -4.411523404 2.209573557 1.812761223 0.428969727 0.524983021 0.345328529 0.336523906 2.390622863 0.092042552 0.80362979 3.88E-05 4.411523404 -1.383791496 Y(ph)T(ph)T(ph)T(ph)QQVVKLIGSHTISKVTVKIGDLK ddPTM_HeLa_A485_30min_R1 1 YTTTQQVVKLIGSHTISKVTVKIGDLK 27 3 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 4 0 Y(0.839)T(0.452)T(0.452)T(0.452)QQVVKLIGS(0.452)HT(0.452)IS(0.452)KVT(0.452)VKIGDLK 49.638 0.012871 74422000 26120 48312 49543 7825.8 81812 63829 44103 100240 60042 12734 TRUE FALSE FALSE 31930.30389 53961.66814 67871.01736 8253.303638 73666.51002 67170.98774 34680.03376 75655.98283 72091.87866 9559.648152 3.340112877 5.644733706 7.099740103 0.863348055 7.705985498 7.026512553 3.627752111 7.914097007 7.541269042 1 13.2227418 -7.247506164 24.68972071 6.045762686 5.164033827 0 2.632072564 3365.067013 5962928.817 1.209790089 0.693760492 5.66E-08 7.247506164 -0.881728859 Y(ph)VS(ph)MTIK ddPTM_HeLa_A486_30min_R1 1 YVSMTIK 7 0 A0A0J9YVV7;E7EWH9;P54296 A0A0J9YVV7 MYOM2 Myomesin-2 2 0 Y(1)VS(1)MTIK 48.794 0.034178 437320000 12793 16557 58147 15716 39413 16545 19895 16542 30738 14979 TRUE FALSE FALSE 11896.27676 15244.96302 80663.07563 36587.64224 34469.45403 14503.84612 14917.06057 12775.74771 33402.39459 11228.1609 1.059503588 1.357743548 7.183997124 3.258560557 3.069910943 1.291738357 1.328539972 1.137830836 2.97487673 1 13.45483402 -6.18891448 4.661978796 1.541357365 3.338498271 0.200101567 1.629723821 0.3819751 15.80456898 0.583205063 0.578455836 6.47E-07 6.18891448 1.797140906 Y(ph)WEEYS(ph)KGADYMDCLYRYLNTQFIK ddPTM_HeLa_A486_30min_R1 1 YWEEYSKGADYMDCLYRYLNTQFIK 25 2 Q5T2B5;A0A0A0MTN0;Q13617;Q13617-2 Q5T2B5 CUL2 Cullin-2 2 0 Y(0.269)WEEY(0.269)S(0.758)KGADY(0.269)MDCLY(0.095)RY(0.095)LNT(0.244)QFIK 56.914 0.013173 1027000000 399220 382830 201870 76048 398990 469760 561470 580760 302330 451120 TRUE FALSE FALSE 371236.7396 352493.1566 280039.4703 177043.5873 348944.9538 411805.7874 420984.2674 448533.6259 328536.2078 338156.6157 1.097824861 1.042396157 0.828135418 0.523555001 1.031903377 1.21779604 1.244938729 1.326407957 0.971550437 1 18.36733205 -5.997413724 24.99838339 1.172395894 0.868857762 0.359692183 0.174509715 88.32381555 853701.1704 0.057495969 0.064817063 1.01E-06 5.997413724 -0.303538132 Y(ph)Y(ph)S(ph)QPRSYR ddPTM_HeLa_A485_30min_R1 3 YYSQPRSYR 9 1 A0A1W2PNU3 A0A1W2PNU3 3 0 Y(1)Y(1)S(1)QPRSYR;Y(1)Y(1)S(1)QPRSYR;Y(1)Y(1)S(1)QPRSYR ;; 64.199 0.0030572 690850000 112190 165985 147302 115703 213057 135400 147235 178321 170088 143184 TRUE FALSE FALSE 137146.2784 185395.5019 201795.1395 122023.5619 191844.297 142489.3346 115777.0395 134587.4952 204223.1015 107490.8639 1.275887768 1.724755901 1.877323637 1.135199379 1.784749792 1.325594841 1.077087254 1.25208311 1.899911249 1 16.71385452 -6.410374471 10.78395989 1.310243277 1.56268508 0.141187069 0.306803237 1.004359054 90.35921446 0.106961096 0.094289396 3.89E-07 6.410374471 0.252441804 Y(ph)Y(ph)S(ph)QPRSYR ddPTM_HeLa_A486_30min_R1 4 YYSQPRSYR 9 1 A0A1W2PNU3 A0A1W2PNU3 3 0 Y(1)Y(1)S(1)QPRSYR;Y(1)Y(1)S(1)QPRSYR;Y(1)Y(1)S(1)QPRSYR;Y(1)Y(1)S(1)QPRSYR ;;; 63.727 0.014374 1260380000 178682 159831 175105 49751 210309 144795 159556 155261 162858 129529 TRUE FALSE FALSE 166157.3145 147165.4095 242910.3455 115822.8423 183930.0842 126931.6651 119633.4012 119911.4596 176974.6626 97094.09531 1.711301949 1.515698859 2.501803479 1.192892749 1.894348813 1.307305709 1.232138791 1.235002595 1.822712926 1 16.56709594 -6.064495867 1.404973071 1.326195614 1.806843457 0.245785462 0.369935957 0.614667255 2.479064218 0.153856997 0.163564668 8.62E-07 6.064495867 0.480647843 Y(ph)Y(ph)Y(ph)VKNIIK ddPTM_HeLa_A485_30min_R1 1 YYYVKNIIK 9 1 A0A087X2F7;P28324-2;P28324 A0A087X2F7 ELK4 ETS domain-containing protein Elk-4 3 0 Y(1)Y(1)Y(1)VKNIIK 49.368 0.018312 11641000 18852 13988 11027 23145 18700 15962 20584 16028 12897 31009 TRUE FALSE FALSE 23045.56236 15623.77492 15106.34617 24409.35274 16838.16234 16797.74564 16186.06024 12097.10787 15485.3096 23279.02698 0.989971032 0.671152404 0.648925154 1.048555542 0.723318992 0.721582807 0.695306563 0.519656938 0.665204332 1 14.50674314 -5.979601673 24.99181918 0.692506426 0.822985271 0.10066795 0.160668684 511.2039009 626318.6555 0.049425772 0.056037798 1.05E-06 5.979601673 0.130478845 YAAPDKNSSSSTIGS(ph)PSSR ddPTM_HeLa_A485_30min_R1 2 YAAPDKNSSSSTIGSPSSR 19 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 YAAPDKNSSSSTIGS(0.769)PS(0.116)S(0.116)R;YAAPDKNSSS(0.001)S(0.001)T(0.001)IGS(0.992)PS(0.003)S(0.003)R ; 113.73 2.04E-05 259890000 132285 187091 125535 135588 214040 189629 233030 297790 151387 180822 TRUE FALSE FALSE 161711.3419 208969.665 171975.6204 142994.8291 192729.4261 199557.6812 183241.2368 224756.5356 181768.9823 135746.4032 1.191275335 1.539412169 1.266888967 1.053396818 1.419775563 1.470077118 1.349879131 1.655708957 1.339033507 1 17.05055445 YAAPDKNSSSSTIGS(ph)PSSR ddPTM_HeLa_A486_30min_R1 2 YAAPDKNSSSSTIGSPSSR 19 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 YAAPDKNSSSSTIGS(0.453)PS(0.453)S(0.093)R;YAAPDKNSSSSTIGS(0.992)PS(0.005)S(0.001)R ; 163.74 1.09E-12 214150000 224047 178563 129570 75508 221911 177532 200016 215301 145439 234298 TRUE FALSE FALSE 208342.4623 164413.0176 179742.974 175786.44 194076.8531 155629.9069 149969.8812 166281.6623 158045.7696 175628.2558 1.186269609 0.936142176 1.023428566 1.000900676 1.105043447 0.886132508 0.853905202 0.946781949 0.899888056 1 17.42216544 -6.272925393 24.9805442 0.910050638 1.039768048 0.457324309 0.07176859 686.7441687 1493572.327 0.024301313 0.021616138 5.33E-07 6.272925393 0.129717409 YAAVHVHTNAAR ddPTM_HeLa_A485_30min_R1 1 YAAVHVHTNAAR 12 0 C9J2F3;B5MCT7;A8MX49;P49593-2;P49593 C9J2F3 PPM1F Protein phosphatase 1F 0 0 59.542 0.035589 2309100 413.74 882.6 746.63 778.92 1260.1 853.95 941.51 840.02 1021.3 896.05 FALSE FALSE TRUE 505.7750356 985.8123924 1022.839507 821.4704273 1134.64002 898.6615015 740.3486971 634.0037779 1226.265542 672.6812256 0.751879221 1.465497111 1.520541184 1.221188278 1.686742511 1.335939621 1.100593667 0.942502561 1.822951935 1 9.393779183 -6.593610758 10.75408151 1.212315492 1.358310516 0.025222591 0.321787868 1.787939183 261.7742768 0.120331599 0.093162138 2.55E-07 6.593610758 0.145995024 YACGLWGLS(ph)PASR ddPTM_HeLa_A485_30min_R1 3 YACGLWGLSPASR 13 0 Q15637-6;H7C0N4;H7C561 Q15637-6 SF1 Splicing factor 1 1 0 YACGLWGLS(0.994)PAS(0.006)R;YACGLWGLS(0.999)PAS(0.001)R;YACGLWGLS(0.995)PAS(0.005)R ;; 158.11 1.15E-08 589100000 418810 520840 488850 412040 652840 478550 587110 644950 422790 597350 TRUE FALSE FALSE 511972.8396 581747.7073 669695.9577 434548.7019 587840.9573 503606.138 461669.1523 486775.0013 507640.0749 448441.6384 1.141671058 1.297265145 1.49338487 0.969019521 1.310852755 1.123013777 1.029496623 1.085481275 1.132009233 1 18.77456071 -6.080108042 0.910789186 1.062098786 1.279892661 0.290969383 0.130409385 0.747523879 1.350657189 0.073570472 0.082158802 8.32E-07 6.080108042 0.217793875 YACGLWGLS(ph)PASR ddPTM_HeLa_A486_30min_R1 3 YACGLWGLSPASR 13 0 Q15637-6;H7C0N4;H7C561 Q15637-6 SF1 Splicing factor 1 1 0 YACGLWGLS(0.998)PAS(0.002)R;YACGLWGLS(0.995)PAS(0.005)R;YACGLWGLS(0.997)PAS(0.003)R ;; 175.88 1.39E-12 680960000 617940 633830 562810 241858 715270 580420 716140 665080 542520 669280 TRUE FALSE FALSE 574625.597 583603.0024 780745.1046 563057.6468 625554.167 508813.6817 536954.1974 513655.8026 589546.0704 501687.9317 1.145384532 1.163278934 1.556236567 1.122326473 1.246898973 1.014203551 1.070295224 1.02385521 1.175125079 1 18.93643071 -6.251540361 23.39868242 1.059036728 1.25245661 0.377055453 0.122065737 321.4915663 759921.0739 0.040871591 0.040334197 5.60E-07 6.251540361 0.193419882 YADEEIPRS(ph)PFK ddPTM_HeLa_A485_30min_R1 4 YADEEIPRSPFK 12 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 YADEEIPRS(1)PFK;YADEEIPRS(1)PFK;YADEEIPRS(1)PFK;YADEEIPRS(1)PFK ;;; 201.4 2.22E-17 5545310000 5073420 3815700 2954050 6712800 6235600 4619710 7124400 6199200 3941640 9012300 TRUE FALSE FALSE 6201984.776 4261912.923 4046876.023 7079503.266 5614761.769 4861590.872 5602213.739 4678836.48 4732690.993 6765699.469 0.916680501 0.629929388 0.598145992 1.046381575 0.829886369 0.718564414 0.828031716 0.691552514 0.699512447 1 22.68980766 -11.22240574 2.262611235 1.729171935 0.771133726 0.216190294 0.129508391 8724781.603 1842183.191 32470351.01 0.033014312 5.99E-12 11.22240574 -0.958038209 YADEEIPRS(ph)PFK ddPTM_HeLa_A486_30min_R1 4 YADEEIPRSPFK 12 1 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 YADEEIPRS(1)PFK;YADEEIPRS(1)PFK;YADEEIPRS(1)PFK;YADEEIPRS(1)PFK ;;; 180.7 3.93E-13 7190270000 4053730 3894300 2107990 2097210 3980940 4590980 5797750 5246500 2771660 5465550 TRUE FALSE FALSE 3769584.46 3585701.485 2924260.182 4882410.867 3481613.384 4024591.565 4347091.628 4051986.48 3011909.72 4096940.705 0.920097393 0.875214396 0.713766782 1.191721145 0.849808097 0.982340691 1.06105798 0.989027367 0.735160681 1 21.96611558 -5.230061239 24.9916685 0.971232693 0.840245062 0.204136213 0.12329693 1135.130462 904093.3852 0.032757543 0.056731082 5.89E-06 5.230061239 -0.130987631 YADEEIPRS(ph)PFKVK ddPTM_HeLa_A485_30min_R1 2 YADEEIPRSPFKVK 14 2 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 1 0 YADEEIPRS(1)PFKVK;YADEEIPRS(1)PFKVK ; 129.32 9.73E-06 323780000 151041 381850 276758 109448 464740 536400 784550 1791690 246204 189688 TRUE FALSE FALSE 184639.5494 426504.0358 379142.3011 115426.8671 418468.8538 564485.0746 616924.4833 1352275.218 295614.8845 142402.2725 1.296605357 2.995064813 2.662473669 0.810568996 2.938638874 3.964017318 4.332265717 9.496163186 2.075914093 1 17.11961264 -6.318964705 2.222830768 4.876148301 2.068260512 0.159496467 2.195021077 0.448901036 4.35522614 0.851680137 0.755094372 4.80E-07 6.318964705 -2.807887789 YADLTEDQLPSCESLKDTIAR ddPTM_HeLa_A485_30min_R1 1 YADLTEDQLPSCESLKDTIAR 21 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 0 92.932 0.0001573 20519000 9454.3 10961 11927 8872.2 17676 9391.1 15320 13806 10227 15110 FALSE FALSE TRUE 11557.37642 12242.7936 16339.29362 9356.86582 15916.11538 9882.803475 12046.75685 10420.05685 12279.46509 11343.35508 1.018867552 1.079292107 1.440428648 0.824876393 1.40312238 0.871241657 1.062010028 0.918604485 1.082524968 1 13.4695598 -6.309026084 24.99998239 0.986484915 1.146909685 0.18242196 0.175917598 722.6495373 379646.46 0.058352482 0.051462202 4.91E-07 6.309026084 0.16042477 YADS(ph)PGASSPEQPK ddPTM_HeLa_A485_30min_R1 1 YADSPGASSPEQPK 14 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 YADS(0.999)PGAS(0.001)SPEQPK 162.37 1.48E-07 0 70660 65390 53219 109160 102070 84588 111100 118980 75677 122980 TRUE FALSE FALSE 86378.07323 73036.79168 72906.92273 115123.1344 91907.55241 89016.89688 87362.5774 89799.96845 90864.67975 92323.34928 0.935603765 0.791097726 0.789691051 1.246955784 0.995496298 0.964186174 0.946267419 0.97266801 0.984200427 1 16.49440794 YAEAVTR ddPTM_HeLa_A485_30min_R1 1 YAEAVTR 7 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 143.56 0.0024746 0 34323 41022 43240 36805 56801 43082 48895 52705 39096 53126 FALSE FALSE TRUE 41958.03294 45819.16606 59236.27537 38815.56395 51145.693 45337.7069 38448.18381 39779.01611 46942.20859 39882.66591 1.052036818 1.148849131 1.485263686 0.973243966 1.282404068 1.136777241 0.964032442 0.997401132 1.177007793 1 15.28347423 -6.563517908 6.904158336 1.035627223 1.192616054 0.215782838 0.138340293 0.310000924 39.56688378 0.052235623 0.040577878 2.73E-07 6.563517908 0.156988831 YAEEDRR ddPTM_HeLa_A485_30min_R1 2 YAEEDRR 7 1 P38646;H0Y8S0 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 152.34 0.0018987 1301900000 736710 1002430 766490 750310 846050 968260 1013710 1213990 888600 1278390 FALSE FALSE TRUE 900588.5979 1119655.469 1050046.547 791297.5354 761814.2913 1018956.596 797122.5773 916257.049 1066933.869 959710.9 0.938395717 1.166659114 1.094127979 0.824516566 0.793795602 1.061732858 0.830586146 0.954721937 1.111724238 1 19.87224035 -5.23583508 24.78961557 0.932169518 1.076420784 0.212373601 0.110769695 973.4198095 942445.8785 0.030212812 0.05230347 5.81E-06 5.23583508 0.144251266 YAEEDRR ddPTM_HeLa_A486_30min_R1 2 YAEEDRR 7 1 P38646;H0Y8S0 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 126.04 0.0042352 929400000 664560 507930 631480 261730 707640 702340 677420 592310 752520 737050 FALSE FALSE TRUE 617977.7758 467679.777 876005.9676 609320.6671 618881.1927 615692.4317 507922.351 457453.943 817749.0395 552487.8826 1.118536343 0.8464978 1.585565938 1.102867024 1.120171523 1.114399883 0.919336635 0.827989097 1.480121221 1 19.0755833 -6.257541982 2.347611071 1.043660117 1.164462327 0.033874749 0.232764834 1.104371145 11.98328481 0.090180009 0.083482765 5.53E-07 6.257541982 0.12080221 YAEYS(ph)FTSLPVPESNLR ddPTM_HeLa_A486_30min_R1 1 YAEYSFTSLPVPESNLR 17 0 Q5UIP0;Q5UIP0-2 Q5UIP0 RIF1 Telomere-associated protein RIF1 1 0 YAEYS(0.949)FT(0.021)S(0.03)LPVPESNLR 105.31 0.00010206 0 21845 23311 22177 10292 29196 18978 31153 27564 19649 24963 TRUE FALSE FALSE 20313.77831 21463.75146 30764.52832 23960.29613 25533.96544 16636.68731 23358.1899 21288.27892 21352.19114 18712.10232 1.085595726 1.147051844 1.64409791 1.28047056 1.364569571 0.889087021 1.24829319 1.137674354 1.141089909 1 14.19168404 -6.22627411 24.96671697 1.102149959 1.313165422 0.305790414 0.165098749 830.6760857 589765.6501 0.05599808 0.055996172 5.94E-07 6.22627411 0.211015463 YAGALRAS(ph)GEMASAQYITAALR ddPTM_HeLa_A485_30min_R1 1 YAGALRASGEMASAQYITAALR 22 1 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 Y(0.001)AGALRAS(0.992)GEMAS(0.006)AQYITAALR 52.318 0.016865 12051000 3613.9 5217.2 3743.9 4866.9 7659.1 3756.6 6057.6 5408.2 4720.8 5368.3 TRUE FALSE FALSE 4417.799587 5827.306156 5128.924407 5132.766423 6896.533111 3953.289767 4763.344274 4081.83047 5668.221258 4030.081606 1.096205988 1.445952396 1.272660186 1.273613521 1.711263886 0.980945339 1.18194735 1.012840649 1.406478035 1 11.97659334 -6.317339301 24.99999784 1.12133893 1.355075823 0.299121875 0.186213336 389.7713995 174315.3894 0.063033448 0.055590294 4.82E-07 6.317339301 0.233736893 YAGALRAS(ph)GEMASAQYITAALR ddPTM_HeLa_A486_30min_R1 2 YAGALRASGEMASAQYITAALR 22 1 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 Y(0.004)AGALRAS(0.995)GEMASAQYITAALR;Y(0.002)AGALRAS(0.997)GEMASAQYITAALR ; 51.539 0.017538 34090000 6753.2 7413.6 7518.6 4949.3 10332 9276.3 10406.2 10924.2 7270.5 7572.8 TRUE FALSE FALSE 6279.835554 6826.119336 10430.00328 11522.22052 9036.064218 8131.884421 7802.458694 8436.998134 7900.712794 5676.521589 1.106282334 1.202517991 1.837393395 2.029802995 1.591831208 1.432547079 1.374514053 1.486297198 1.391822909 1 12.47079144 -8.472822691 0.707405635 0.993984793 1.545144698 0.261562802 0.257615783 2.449799066 2.120594817 0.324272945 0.10884109 3.37E-09 8.472822691 0.551159905 YAHVVLR ddPTM_HeLa_A485_30min_R1 2 YAHVVLR 7 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 0 ; ; 142.63 0.00083773 165904000 157128 173678 186247 181140 245480 173548 240880 244110 160763 247450 FALSE FALSE TRUE 192080.5815 193988.1313 255147.5157 191035.2195 221039.1493 182634.7049 189414.0202 184241.6398 193026.6595 185765.269 1.033996196 1.044264799 1.373494179 1.028368869 1.18988415 0.983147743 1.01964173 0.991798094 1.039089064 1 17.50312127 -6.269582846 24.78766959 1.007029353 1.136452913 0.306011327 0.095791589 713.6801415 2172345.11 0.033452718 0.029987011 5.38E-07 6.269582846 0.129423561 YAHVVLR ddPTM_HeLa_A486_30min_R1 2 YAHVVLR 7 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 0 ; ; 132.8 0.001344 121594000 157476 179419 169832 57458 208857 175047 205430 195229 172749 197761 FALSE FALSE TRUE 146437.7456 165201.185 235595.4987 133765.1278 182660.2075 153451.4809 154029.2412 150779.6185 187723.0224 148240.3584 0.987839932 1.114414366 1.589280417 0.902352971 1.232189463 1.035153197 1.039050653 1.017129344 1.266342206 1 17.17757875 YAHWVVSQPPDTYLKPLMTELLKR ddPTM_HeLa_A486_30min_R1 1 YAHWVVSQPPDTYLKPLMTELLKR 24 2 Q92973-3;Q92973-2;Q92973 Q92973-3 TNPO1 Transportin-1 0 0 55.127 0.01911 3476300 8693.8 7611.9 4950.7 2389.9 9388.6 6163.6 12488 9801 5918.6 10689 FALSE FALSE TRUE 8084.409515 7008.705322 6867.743624 5563.807979 8210.994243 5403.197699 9363.370315 7569.526254 6431.629013 8012.404826 1.008986651 0.874731803 0.857138871 0.69439926 1.024785245 0.674354057 1.16860924 0.944725887 0.802708944 1 12.9680196 -6.758010909 24.99999928 0.974404815 0.857011073 0.168053245 0.134199798 174.1365879 1269795.269 0.051557827 0.038296752 1.75E-07 6.758010909 -0.117393742 YAICSALAASALPALVMSK ddPTM_HeLa_A485_30min_R1 2 YAICSALAASALPALVMSK 19 0 P36578;H3BM89;H3BTP7 P36578 RPL4 60S ribosomal protein L4 0 0 ; ; 248.68 1.65E-38 27984000 57865 65618 53604 58748 77950 69168 91174 97879 50879 88911 FALSE FALSE TRUE 70736.86962 73291.4543 73434.35025 61957.25448 70189.0243 72789.52953 71693.93008 73874.02178 61089.94861 66747.12399 1.059774046 1.098046626 1.100187482 0.928238563 1.051566271 1.09052683 1.074112648 1.106774605 0.915244657 1 16.02641805 -7.432959418 0.008850776 6.91E-08 2.071549596 0.107205345 0.063586046 3249.172404 29.31729206 3429.093418 3428.387354 3.69E-08 7.432959418 2.071549527 YAICSALAASALPALVMSK ddPTM_HeLa_A486_30min_R1 2 YAICSALAASALPALVMSK 19 0 P36578;H3BM89;H3BTP7 P36578 RPL4 60S ribosomal protein L4 0 0 ; ; 240.59 1.01E-36 32686000 72155 67082 50781 27558 74912 68748 84882 73429 64400 92600 FALSE FALSE TRUE 67097.30711 61766.17801 70444.76316 64156.4167 65515.83843 60266.57074 63643.62581 56710.81964 69982.24385 69412.35728 0.966647867 0.889844121 1.014873517 0.924279469 0.943864191 0.868239793 0.916891866 0.817013308 1.00821016 1 16.0829049 -6.040143454 24.22689738 0.909837461 0.947487292 0.024589367 0.060804847 955.5006145 576649.6594 0.018942452 0.01894578 9.12E-07 6.040143454 0.03764983 YAIHCIHAIFSSK ddPTM_HeLa_A485_30min_R1 1 YAIHCIHAIFSSK 13 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 0 0 107.85 0.00085301 5812800 17816 23454 20854 18705 28427 17471 27458 30264 16003 32381 FALSE FALSE TRUE 21779.10774 26196.74128 28568.76241 19726.80679 25596.70807 18385.75454 21591.37399 22841.70655 19214.65531 24309.01263 0.895927287 1.077655505 1.175233353 0.81150177 1.052971935 0.756334896 0.888204483 0.939639421 0.790433392 1 14.56920368 -5.271208146 24.99736176 0.889767019 1.052410398 0.313265915 0.107370098 757.0437589 1937203.323 0.029262826 0.044040486 5.36E-06 5.271208146 0.162643379 YALQMEQLNGILLHLESELAQTR ddPTM_HeLa_A485_30min_R1 1 YALQMEQLNGILLHLESELAQTR 23 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 204.59 1.15E-29 13327000 3018.7 5084.1 4961.2 3750.4 6731.8 4594.9 5302.4 6768.7 4431.8 5794 FALSE FALSE TRUE 3690.199401 5678.641269 6796.554333 3955.274855 6061.558355 4835.481859 4169.498923 5108.665712 5321.221609 4349.662431 0.848387538 1.305536087 1.56254754 0.909329153 1.393569835 1.111691295 0.958579887 1.174497054 1.223364271 1 12.08668773 -6.491639975 24.69732903 1.093863652 1.217039228 0.063594172 0.209605472 1685.232486 1332344.701 0.073402251 0.064656574 3.22E-07 6.491639975 0.123175575 YALQMEQLNGILLHLESELAQTR ddPTM_HeLa_A486_30min_R1 1 YALQMEQLNGILLHLESELAQTR 23 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 220.23 9.41E-36 8867800 6527.7 7717.2 6388.1 1823.4 9776.4 7340.8 6774.6 8959.9 6090.8 5760.1 FALSE FALSE TRUE 6070.141939 7105.660966 8861.743399 4244.96735 8550.152751 6435.166732 5079.523426 6919.926363 6618.755448 4317.733468 1.405863049 1.645692357 2.052406306 0.983147149 1.980240979 1.490403884 1.176432835 1.602675666 1.532923581 1 12.07605847 -11.96789801 0.213276753 1.54E-10 1.641339863 0.2278653 0.30410639 82.49544682 1.788437009 38.05097132 0.654252664 1.08E-12 11.96789801 1.641339862 YALS(ph)PK ddPTM_HeLa_A486_30min_R1 2 YALSPK 6 0 Q52LJ0-1;Q52LJ0 Q52LJ0-1 FAM98B Protein FAM98B 1 0 YALS(1)PK;YALS(1)PK ; 73.26 0.026301 123902000 500930 519710 308610 327520 531320 622360 754120 710590 455060 893710 TRUE FALSE FALSE 465817.3938 478526.2868 428112.0569 762483.1119 464676.8912 545579.5509 565431.1997 548804.1691 494504.9672 669919.1989 0.695333698 0.714304483 0.639050288 1.138171757 0.69363125 0.814396052 0.844028953 0.819209496 0.738156136 1 19.35362757 -13.99999999 0.026697619 2.094786693 2.42E-09 0.191092309 0.131965944 3429.809982 6.892086702 402.2274446 179.6867185 1.00E-14 13.99999999 -2.094786691 YALYDATYETK ddPTM_HeLa_A485_30min_R1 2 YALYDATYETK 11 0 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;E9PLJ3;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 0 ; ; 273.9 5.43E-46 146985000 231020 241760 187833 266830 313340 292490 380820 399020 228890 398940 FALSE FALSE TRUE 282409.602 270031.729 257320.2431 281406.2473 282142.7694 307804.3241 299454.696 301159.7194 274826.1235 299491.5999 0.942963349 0.901633732 0.859190185 0.939613155 0.942072397 1.027756118 0.999876778 1.005569837 0.917642176 1 18.19215601 -5.845744193 2.284360224 0.990406372 0.903050932 0.539853477 0.034484025 0.225001684 2.402200215 0.011845611 0.014315705 1.43E-06 5.845744193 -0.08735544 YALYDATYETK ddPTM_HeLa_A486_30min_R1 1 YALYDATYETK 11 0 P23528;E9PP50;E9PK25;G3V1A4;E9PQB7;E9PLJ3;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 0 247.51 5.22E-28 27020000 57796 65478 48750 25956 72910 71765 82600 81342 55876 78185 FALSE FALSE TRUE 53744.79886 60289.28481 67627.30557 60426.87974 63764.94794 62911.36395 61932.60635 62822.20228 60719.37667 58606.9671 0.917037709 1.028705081 1.153912392 1.031052838 1.088009687 1.073445139 1.056744776 1.07192379 1.03604366 1 15.83878456 -4.324473714 3.782954824 1.067381058 0.910195718 0.556246829 0.039024326 0.14817794 3.729053284 0.009226357 0.056403446 4.74E-05 4.324473714 -0.157185339 YAPS(ph)EAGLHEMDIR ddPTM_HeLa_A485_30min_R1 3 YAPSEAGLHEMDIR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 1 0 YAPS(1)EAGLHEMDIR;YAPS(1)EAGLHEMDIR;YAPS(1)EAGLHEMDIR ;; 156.29 3.14E-07 0 341038 369620 329100 278608 560990 335712 477080 526660 366580 396310 TRUE FALSE FALSE 416900.7265 412843.8437 450847.785 293827.6496 505135.8658 353289.3612 375147.9606 397495.8092 440149.2435 297517.2105 1.401265916 1.387630124 1.515367075 0.987598832 1.697837463 1.187458569 1.260928603 1.336043076 1.479407671 1 18.1826136 -10.67920459 2.883405514 0.957590426 1.356866933 0.260110271 0.182760224 113970436.4 100558705.1 35243189.33 0.044291326 2.09E-11 10.67920459 0.399276508 YAPSEAGLHEMDIR ddPTM_HeLa_A485_30min_R1 2 YAPSEAGLHEMDIR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 0 ; ; 91.207 0.023268 0 60652 84919 90008 50912 98779 80480 97334 104692 77999 87576 FALSE FALSE TRUE 74143.82815 94849.53835 123305.7047 53693.19364 88944.21593 84693.80835 76537.79575 79016.12285 93652.68385 65744.91492 1.127750005 1.442690107 1.875516987 0.816689682 1.352868371 1.288218389 1.164162975 1.201859078 1.424485589 1 16.00459169 -5.263445398 24.99991 1.197998393 1.478056119 0.257254032 0.234759588 265.3480057 3306900.608 0.064649367 0.101550283 5.45E-06 5.263445398 0.280057726 YAPTEVGLHEMHIK ddPTM_HeLa_A485_30min_R1 2 YAPTEVGLHEMHIK 14 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 134.21 2.07E-05 16961400 16473.9 18081.6 18964.5 18588.2 25539 18775.6 21043.2 23697 18557.6 24994 FALSE FALSE TRUE 20138.46222 20196.08583 25980.25773 19603.6263 22996.24749 19758.66138 16547.14841 17885.27359 22281.9401 18763.45578 1.073281087 1.076352143 1.384620085 1.04477696 1.225587 1.053039569 0.881881707 0.953197204 1.187517926 1 14.19563794 -6.469359764 6.36390416 0.996970526 1.160828787 0.289285132 0.11579466 0.281477604 25.96801753 0.041520852 0.036024562 3.39E-07 6.469359764 0.163858261 YAQGFLPEKLPQQDHTTT(ph)TDSEMEEPYLQESK ddPTM_HeLa_A485_30min_R1 1 YAQGFLPEKLPQQDHTTTTDSEMEEPYLQESK 32 1 B3KPJ4;A0A0A0MSI2;Q8IXK0-3;Q8IXK0-2;Q8IXK0-4;Q8IXK0;Q8IXK0-5 B3KPJ4 PHC2 Polyhomeotic-like protein 2 1 0 YAQGFLPEKLPQQDHT(0.215)T(0.164)T(0.407)T(0.215)DSEMEEPYLQESK 171.78 1.41E-14 133370000 50948 52723 32564 52569 62928 61396 105460 118700 45378 80282 TRUE FALSE FALSE 62281.20683 58888.49622 44610.7787 55440.71136 56662.66737 64610.59962 82927.60947 89588.63889 54484.94837 60269.17488 1.033384097 0.977091462 0.740192292 0.919885024 0.940159999 1.072033917 1.375953954 1.486475285 0.904026784 1 15.87913269 -6.462178116 3.461995544 1.232373247 0.916064055 0.33854698 0.172786909 0.244863912 5.805507159 0.066257036 0.055275348 3.45E-07 6.462178116 -0.316309192 YAS(ph)ICQQNGIVPIVEPEILPDGDHDLKR ddPTM_HeLa_A485_30min_R1 1 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 P04075-2;P04075;H3BQN4;H3BPS8;P09972 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 1 0 Y(0.476)AS(0.524)ICQQNGIVPIVEPEILPDGDHDLKR 65.155 0.010078 44587000 17790 17597 16510 32988 23480 27207 27695 36361 20848 43426 TRUE FALSE FALSE 21747.32413 19654.81608 22617.73604 34790.05091 21142.24876 28631.51645 21777.737 27443.40774 25032.00237 32600.6974 0.667081562 0.602895571 0.693780742 1.067156647 0.648521364 0.878248588 0.668014452 0.841804315 0.767836408 1 14.99261521 -13.99999991 0.033174534 2.169400026 9.42E-11 0.275885278 0.127849935 1746.918172 4.343220241 232.04797 85.37753966 1.00E-14 13.99999991 -2.169400026 YASICQQNGIVPIVEPEILPDGDHDLK(ac)R ddPTM_HeLa_A485_30min_R1 1 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 P04075-2;P04075;H3BQN4;H3BPS8;P09972 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 YASICQQNGIVPIVEPEILPDGDHDLK(1)R 109.14 3.73E-07 44070000 2554.2 3692.4 5021 3493.3 7333.1 3903.6 5621 6725 3981.3 8120.6 FALSE TRUE FALSE 3122.372978 4124.19406 6878.476841 3684.130133 6602.990816 4107.98646 4420.027431 5075.683206 4780.310391 6096.283869 0.512176441 0.676509518 1.128306521 0.604323915 1.083117348 0.673850915 0.725036354 0.832586427 0.784135138 1 12.57371437 -14 0.026705434 2.082841849 7.59E-12 0.12832837 0.183697848 4750.266933 9.548256737 553.9668393 247.415228 1.00E-14 14 -2.082841849 YASICQQNGIVPIVEPEILPDGDHDLK(ac)R ddPTM_HeLa_A486_30min_R1 1 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 P04075-2;P04075;H3BQN4;H3BPS8;P09972 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 YASICQQNGIVPIVEPEILPDGDHDLK(1)R 131.62 7.59E-12 46092000 3935.6 4866.4 5691.3 1573.1 6118.4 5724.6 7122.2 6327.9 5057.2 8577.2 FALSE TRUE FALSE 3659.734763 4480.768741 7895.123778 3662.2563 5350.97322 5018.357055 5340.150229 4887.175307 5495.562168 6429.413292 0.569217532 0.696917205 1.227969555 0.569609719 0.832264622 0.780531104 0.830581266 0.760127726 0.854753291 1 12.65047138 -14 0.200722006 1.924162742 0.763707983 0.126906725 0.173701794 332.5989614 3.292785675 123.3378783 0.413640637 1.00E-14 14 -1.160454759 YASICQQNGIVPIVEPEILPDGDHDLKR ddPTM_HeLa_A485_30min_R1 4 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 P04075-2;P04075;H3BQN4;H3BPS8;P09972 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 0 ;;; ;;; 148.1 9.45E-19 705947000 535455 498987 406150 623773 648164 662114 917609 968815 431791 840399 FALSE FALSE TRUE 654565.1175 557339.189 556401.7863 657848.1395 583630.5163 696781.2652 721554.341 731211.6022 518447.4931 630902.9957 1.037505166 0.88339918 0.881913369 1.042708854 0.925071715 1.104419015 1.143685077 1.158992123 0.821754686 1 19.26705868 -6.256198135 24.97697199 1.06182687 0.9511009 0.157339614 0.102624964 699.4388031 3333159.288 0.034387384 0.033414087 5.54E-07 6.256198135 -0.110725969 YASICQQNGIVPIVEPEILPDGDHDLKR ddPTM_HeLa_A486_30min_R1 1 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 P04075-2;P04075;H3BQN4;H3BPS8;P09972 P04075-2 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 0 138.71 1.71E-18 36970000 30618 35023 24724 13891 37577 39897 45493 42828 28956 51275 FALSE FALSE TRUE 28471.83631 32247.64993 34297.79493 32338.95001 32863.74227 34974.91378 34110.17022 33076.99933 31465.92939 38435.40626 0.740771052 0.839008952 0.892348963 0.841384368 0.855038244 0.909966023 0.887467404 0.860586697 0.818670399 1 15.2301483 YASS(ph)PKPNNSYMFK ddPTM_HeLa_A485_30min_R1 2 YASSPKPNNSYMFK 14 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 YAS(0.001)S(0.999)PKPNNSYMFK;YAS(0.002)S(0.998)PKPNNSYMFK ; 250.1 2.56E-36 5682900000 4016200 2887660 2078160 5945900 4233100 3925000 6185000 5542300 3169700 7993700 TRUE FALSE FALSE 4909589.834 3225346.718 2846957.863 6270709.461 3811637.701 4130506.931 4863524.223 4183042.235 3805829.716 6001017.703 0.818126204 0.537466623 0.474412509 1.044941004 0.635165215 0.688301074 0.810449904 0.697055473 0.634197382 1 22.51677576 -11.06001823 2.224891778 1.4036256 0.703180522 0.253900572 0.151973367 10832562.21 3385642.995 22211799.49 0.037928864 8.71E-12 11.06001823 -0.700445078 YASS(ph)PKPNNSYMFK ddPTM_HeLa_A486_30min_R1 1 YASSPKPNNSYMFK 14 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 YAS(0.002)S(0.998)PKPNNSYMFK 245.74 7.32E-36 2383400000 2181100 2063400 911040 957920 1768000 2273400 3013500 2578500 1485900 3195600 TRUE FALSE FALSE 2028216.153 1899888.669 1263819.086 2230086.171 1546240.954 1992931.022 2259490.426 1991431.838 1614699.008 2395400.96 0.846712591 0.793140147 0.527602313 0.93098659 0.645504022 0.831982226 0.943261886 0.831356366 0.674082976 1 21.19183573 -6.498301282 23.8333824 0.853764587 0.748052595 0.149414033 0.12904582 869.7826803 843451.8134 0.044641628 0.039146398 3.17E-07 6.498301282 -0.105711992 YATS(ph)PKPNNSYMFK ddPTM_HeLa_A485_30min_R1 2 YATSPKPNNSYMFK 14 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 YAT(0.023)S(0.977)PKPNNSYMFK;YAT(0.003)S(0.997)PKPNNSYMFK ; 193.32 2.75E-18 1341700000 1636540 1270360 791630 2210190 1563440 1548270 2482700 2012190 1109610 2987200 TRUE FALSE FALSE 2000582.677 1418917.551 1084486.879 2330927.083 1407778.424 1629335.023 1952250.863 1518697.248 1332298.549 2242546.015 0.892103289 0.63272617 0.483596266 1.039411039 0.627758991 0.726555893 0.870551083 0.677220105 0.594100875 1 21.09670616 -10.06593617 4.492320543 1.000016846 0.726173255 0.21574481 0.156075826 102611415.1 2.433166138 18503.06541 0.036841487 8.59E-11 10.06593617 -0.273843591 YATS(ph)PKPNNSYMFK ddPTM_HeLa_A486_30min_R1 2 YATSPKPNNSYMFK 14 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 YAT(0.08)S(0.92)PKPNNSYMFK;YAT(0.001)S(0.999)PKPNNSYMFK ; 194.37 1.95E-18 1659350000 2225730 2068550 952300 1047250 1834880 2378400 2994200 2856200 1660140 3675900 TRUE FALSE FALSE 2069717.821 1904630.564 1321056.063 2438050.925 1604732.241 2084977.19 2245019.491 2205905.61 1804042.272 2755430.714 0.751141304 0.691227892 0.479437228 0.884816632 0.582388892 0.75667923 0.814761728 0.800566532 0.654722422 1 21.39384642 -14 0.169259247 2.118896879 0.644707899 0.379678359 0.111548957 136.5015396 1.284431207 51.1838363 0.398844133 1.00E-14 14 -1.47418898 YCDPDSYHR ddPTM_HeLa_A486_30min_R1 1 YCDPDSYHR 9 0 P26368-2;P26368;K7ENG2 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 0 85.731 0.015136 71457000 104070 134760 134160 18018 151790 118490 116370 118280 124520 82284 FALSE FALSE TRUE 96775.23042 124081.1268 186110.3449 41946.81458 132751.0828 103871.9085 87252.99516 91350.22603 135313.4939 61679.55082 1.569000246 2.011706071 3.017375167 0.680076525 2.152270583 1.684057473 1.414617876 1.481045579 2.193814515 1 15.91250464 -5.258742574 24.99514255 1.564568316 2.180594964 0.244062039 0.546710159 374.6022031 3471953.651 0.146563641 0.239886712 5.51E-06 5.258742574 0.616026648 YCGS(ph)YR ddPTM_HeLa_A486_30min_R1 2 YCGSYR 6 0 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 YCGS(1)YR;YCGS(1)YR ; 76.134 0.024264 783710000 498320 556760 501670 153752 626660 481360 566350 524790 487720 511290 TRUE FALSE FALSE 463390.3413 512640.3099 695930.0592 357942.4262 548058.4594 421974.6973 424643.2398 405306.7731 529995.9623 383259.6561 1.209076755 1.337579633 1.815818723 0.933942356 1.429992567 1.101015175 1.107977928 1.057525275 1.382863951 1 18.54796261 -5.281870065 24.99893214 1.155685963 1.442500603 0.322332292 0.204944976 977.6784162 1196282.22 0.056475766 0.083876171 5.23E-06 5.281870065 0.28681464 YCGS(ph)YRR ddPTM_HeLa_A485_30min_R1 1 YCGSYRR 7 1 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 YCGS(0.999)Y(0.001)RR 48.794 0.034191 140570000 33489 52160 48010 33681 60624 47371 64101 68757 43085 48460 TRUE FALSE FALSE 40938.51251 58259.65827 65770.89686 35520.90775 54588.0617 49851.27231 50405.29769 51894.23794 51731.7643 36379.81384 1.125308466 1.601428158 1.807895366 0.976390586 1.500504151 1.370300368 1.385529291 1.42645694 1.421990902 1 15.15085054 -10.64425724 2.517642138 0.947961616 1.4092917 0.233678062 0.21787881 15560276.82 12807418.56 5240666.985 0.054038892 2.27E-11 10.64425724 0.461330085 YCGS(ph)YRR ddPTM_HeLa_A486_30min_R1 3 YCGSYRR 7 1 B1AVT0;P49760-3;P49760;P49760-2 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 0 YCGS(1)YRR;YCGS(1)YRR;YCGS(1)YRR ;; 78.516 0.0082005 207662000 86866 84878 84520 28607 124686 84589 101399 102102 83636 90648 TRUE FALSE FALSE 80777.14198 78151.95816 117248.4075 66598.54172 109046.7192 74153.26922 76027.89771 78855.60347 90885.63582 67949.15078 1.188788102 1.150153567 1.72553161 0.980123239 1.604828287 1.091305312 1.118894009 1.160509036 1.337553667 1 16.0521679 YCPNSVLVIIDVKPK ddPTM_HeLa_A486_30min_R1 1 YCPNSVLVIIDVKPK 15 1 H3BNT7;H3BTM8;P51665 H3BNT7 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 0 74.257 0.017294 6428000 9723.6 7759.1 5319.7 6000.2 10182 9124.5 12291 13213 8001.2 14696 FALSE FALSE TRUE 9042.025853 7144.240658 7379.630307 13968.76883 8904.878617 7998.811961 9215.661799 10204.68834 8694.750458 11016.02595 0.820806514 0.648531575 0.669899503 1.268040662 0.808356721 0.726106856 0.836568636 0.926349338 0.789281952 1 13.42731624 -1.000000017 0.036045573 1.388525865 2.56E-06 0.090220815 0.164631221 2686.426993 7.412082547 83.10107856 240.2896412 0.099999996 1.000000017 -1.388523305 YCRPESQEHPEADPGAAPY(ph)LK ddPTM_HeLa_A485_30min_R1 2 YCRPESQEHPEADPGAAPYLK 21 1 P40763-2 P40763-2 STAT3 Signal transducer and activator of transcription 3 1 0 YCRPESQEHPEADPGAAPY(1)LK;YCRPESQEHPEADPGAAPY(1)LK ; 88.396 0.00093996 412690000 556090 603930 450470 804720 790470 559580 803810 779600 399680 805060 TRUE FALSE FALSE 679790.302 674554.36 617117.5986 848679.8159 711768.0313 588878.7435 632069.427 588401.8776 479892.1099 604373.358 1.124785355 1.116121932 1.021086701 1.404231018 1.177695909 0.974362512 1.045826092 0.973573487 0.794032536 1 19.20508054 -6.277239662 6.39131209 0.960601575 1.171015794 0.483968421 0.109050374 0.159385741 29.64903675 0.039900883 0.036461388 5.28E-07 6.277239662 0.210414219 YDDYRDYDS(ph)PER ddPTM_HeLa_A485_30min_R1 2 YDDYRDYDSPER 12 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 YDDYRDYDS(1)PER;YDDYRDYDS(1)PER ; 148.41 7.41E-08 2439600000 899070 1417490 1496450 814460 1101310 1226010 916350 943770 1333050 937310 TRUE FALSE FALSE 1099065.02 1583253.125 2050049.127 858951.8875 991659.7095 1290201.988 720564.3366 712308.9277 1600580.908 703655.8669 1.561935417 2.250038974 2.913425758 1.220698821 1.409296442 1.833569574 1.024029459 1.012297291 2.274664339 1 19.4245105 -5.284746502 24.87030959 1.400119145 2.242624056 0.3897223 0.484798556 725.4258206 774077.8449 0.135793602 0.201561037 5.19E-06 5.284746502 0.842504911 YDDYRDYDS(ph)PER ddPTM_HeLa_A486_30min_R1 2 YDDYRDYDSPER 12 1 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 YDDYRDYDS(1)PER;YDDYRDYDS(1)PER ; 151.39 5.50E-08 2838700000 846130 917040 698950 250210 706440 763700 793340 756540 773020 883660 TRUE FALSE FALSE 786820.6564 844370.4106 969602.1585 582501.5249 617831.7079 669482.4587 594837.9409 584292.3572 840025.996 662385.7843 1.187858609 1.274741141 1.463802789 0.879399194 0.932736968 1.010713808 0.89802341 0.882102803 1.268182403 1 19.33731219 -5.268355864 24.99889251 0.972377193 1.305394879 0.593637666 0.123885102 351.8119677 1271587.057 0.03444829 0.0523949 5.39E-06 5.268355864 0.333017686 YDDYRDYDS(ph)PERER ddPTM_HeLa_A485_30min_R1 2 YDDYRDYDSPERER 14 2 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 YDDYRDYDS(1)PERER;YDDYRDYDS(1)PERER ; 168.08 3.45E-12 4750800000 2064800 2381180 2700100 2896500 4606600 2974100 3869800 3674300 3155000 3978900 TRUE FALSE FALSE 2524107.637 2659638.287 3698979.351 3054728.461 4147950.729 3129819.277 3042985.617 2773172.164 3788179.561 2987033.456 0.845021548 0.890394542 1.23834547 1.022662955 1.38865225 1.047801882 1.018731682 0.928403449 1.268207945 1 21.51028197 -4.655807478 6.925984657 1.111917097 0.858058016 0.34622659 0.135800662 0.230515201 13.24412219 0.034429163 0.092419383 2.21E-05 4.655807478 -0.25385908 YDDYRDYDS(ph)PERER ddPTM_HeLa_A486_30min_R1 3 YDDYRDYDSPERER 14 2 P52756;C9JR02;C9J9P7;C9JFQ5;P52756-4;P52756-2;P52756-5;F8W910;P52756-3 P52756 RBM5 RNA-binding protein 5 1 0 YDDYRDYDS(1)PERER;YDDYRDYDS(1)PERER;YDDYRDY(0.002)DS(0.998)PERER ;; 157.51 1.01E-08 6130610000 1974190 2208020 2317560 884720 3329680 2559620 2950940 3188160 2148710 2241300 TRUE FALSE FALSE 1835809.476 2033048.454 3214981.298 2059672.871 2912040.486 2243840.109 2212583.6 2462285.565 2334961.913 1680063.892 1.092702179 1.210101868 1.913606568 1.225949133 1.733291514 1.33556832 1.316963963 1.465590432 1.389805426 1 20.68008467 -8.061961622 17.69516521 0.999999997 1.421006315 0.214663866 0.234648856 722.0126639 206197.1003 0.222239137 0.057381832 8.67E-09 8.061961622 0.421006318 YDEGSGGS(ph)GDEGRDEAHKR ddPTM_HeLa_A485_30min_R1 1 YDEGSGGSGDEGRDEAHKR 19 2 O94762-4;O94762 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 0 YDEGS(0.362)GGS(0.638)GDEGRDEAHKR 80.102 0.0011335 279370000 97057 116760 112680 99919 175040 119330 172340 154250 116520 157110 TRUE FALSE FALSE 118646.9948 130414.0663 154365.021 105377.322 157612.403 125577.9343 135518.1511 116419.9456 139904.4952 117945.3684 1.005948741 1.105715876 1.308784085 0.893441798 1.336317018 1.064712722 1.148990867 0.987066701 1.186180493 1 16.84775924 -9.749057232 0.444184565 0.966763363 1.122517561 0.060134666 0.131743815 36.05899055 5.568078957 1.815304232 0.07109502 1.78E-10 9.749057232 0.155754198 YDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_A485_30min_R1 2 YDEIFYNLAPADGKLSGSK 19 1 Q9NZN4-2;Q9NZN4 Q9NZN4-2 EHD2 EH domain-containing protein 2 1 0 YDEIFYNLAPADGKLS(0.969)GS(0.031)K;YDEIFYNLAPADGKLS(1)GSK ; 195.01 2.82E-19 2234990000 1039960 471150 333860 2131490 950930 585750 1344310 893770 611910 2675420 TRUE FALSE FALSE 1271295.514 526246.894 457368.7071 2247927.901 856252.0703 616418.9643 1057087.186 674571.5061 734714.7242 2008487.031 0.632961774 0.262011597 0.227718029 1.119214546 0.426316952 0.306907117 0.526310188 0.335860524 0.365805063 1 20.93767772 -10.61320179 2.941366227 1.038943683 0.465107538 0.295153534 0.247078203 190729253.6 200558359.3 57275367.45 0.066922339 2.44E-11 10.61320179 -0.573836145 YDERPGPS(ph)PLPHR ddPTM_HeLa_A485_30min_R1 9 YDERPGPSPLPHR 13 1 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR ;;;;;;;; 152.71 2.21E-08 56493220000 6045750 6642940 6558230 7061500 8769480 6167280 7998100 6673810 6836390 9462910 TRUE FALSE FALSE 7390606.23 7419774.047 8984392.188 7447251.864 7896359.78 6490189.244 6289240.597 5037047.633 8208390.766 7103980.689 1.040347173 1.044453015 1.264698284 1.048320961 1.111540153 0.913598942 0.885312175 0.709045795 1.155463553 1 22.76019623 -6.263166347 23.01161509 0.911538688 1.104752845 0.322399336 0.120672085 54.94731544 732156.6789 0.040432858 0.037549965 5.46E-07 6.263166347 0.193214158 YDERPGPS(ph)PLPHR ddPTM_HeLa_A486_30min_R1 9 YDERPGPSPLPHR 13 1 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR;YDERPGPS(1)PLPHR ;;;;;;;; 152.94 2.14E-08 32834950000 5821380 6376780 4930260 1864067 6696630 5699990 6364400 6647550 5379280 6022350 TRUE FALSE FALSE 5413331.324 5871460.729 6839388.709 4339642.181 5856676.222 4996783.187 4771959.804 5134047.98 5845560.322 4514314.361 1.199148063 1.300631781 1.515044847 0.961307041 1.297356753 1.106875328 1.057072995 1.137281893 1.294894386 1 22.10607546 -5.263163508 24.99961318 1.131789678 1.334510578 0.380317652 0.125994194 166.7136633 2417340.861 0.034305235 0.054034163 5.46E-06 5.263163508 0.202720901 YDERPGPS(ph)PLPHRDR ddPTM_HeLa_A485_30min_R1 5 YDERPGPSPLPHRDR 15 2 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR ;;;; 132.13 7.00E-06 6450070000 642484 1540790 1061020 460325 1380450 1376830 1621380 2650470 919019 689342 TRUE FALSE FALSE 785402.3493 1720971.987 1453535.451 485471.3891 1243007.551 1448918.69 1274958.918 2000438.077 1103457.684 517501.7258 1.517680638 3.325538644 2.808754789 0.938105836 2.401938948 2.799833542 2.463680513 3.865567933 2.132278268 1 18.98120415 -6.002249527 24.99712347 2.628616831 2.202786275 0.005494193 0.904536843 336.34664 3737607.57 0.281052564 0.313570347 9.95E-07 6.002249527 -0.425830556 YDERPGPS(ph)PLPHRDR ddPTM_HeLa_A486_30min_R1 4 YDERPGPSPLPHRDR 15 2 P08621-4;P08621 P08621-4 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR;YDERPGPS(1)PLPHRDR ;;; 123.55 1.34E-05 2226830000 552865 434934 504698 163388 774199 321136 444729 539511 319026 488150 TRUE FALSE FALSE 514112.0185 400468.2458 700130.5819 380375.5212 677091.7423 281517.5054 333453.1003 416676.1227 346679.4305 365914.0627 1.405007544 1.094432509 1.91337435 1.039521461 1.850411917 0.769354157 0.911288016 1.138726726 0.947434018 1 18.48114534 -6.278392427 24.99737868 0.959401464 1.44197623 0.462376744 0.273045992 769.716154 1134947.993 0.090968832 0.080428537 5.27E-07 6.278392427 0.482574766 YDLLVSNAIQFLASVCERPHYK ddPTM_HeLa_A485_30min_R1 1 YDLLVSNAIQFLASVCERPHYK 22 1 P55060;P55060-3 P55060 CSE1L Exportin-2 0 0 114.46 1.09E-06 5424000 7373.5 4528.5 5241.4 9064.5 7125.6 3524.6 5127.7 5020.7 5117.6 11971 FALSE FALSE TRUE 9013.709637 5058.068682 7180.411973 9559.670682 6416.150245 3709.142606 4032.125006 3789.365453 6144.655379 8986.85001 1.00298877 0.562829988 0.798990966 1.063739872 0.71394874 0.41273 0.448669445 0.421656693 0.683738504 1 13.13359981 -4.250439494 23.59133454 0.661832763 1.002989212 0.163287611 0.217456115 1422.34744 3050362.553 0.058709565 0.805196323 5.62E-05 4.250439494 0.341156449 YDLLVSNAIQFLASVCERPHYK ddPTM_HeLa_A486_30min_R1 1 YDLLVSNAIQFLASVCERPHYK 22 1 P55060;P55060-3 P55060 CSE1L Exportin-2 0 0 125.23 6.09E-09 2199800 5595.9 5219.4 3769 3259.2 5469.1 6991.5 6793.8 4426 4998.5 5079.4 FALSE FALSE TRUE 5203.656307 4805.795735 5228.457737 7587.582311 4783.114481 6128.959814 5093.919383 3418.296419 5431.774005 3807.485179 1.366691153 1.262196833 1.373205014 1.992806788 1.256239816 1.609713374 1.337869786 0.89778325 1.42660411 1 11.89462271 -7.010797975 18.27557182 1.12087973 1.475608779 0.326844008 0.236505 18.06117365 30565.99592 0.10428469 0.065045557 9.75E-08 7.010797975 0.354729049 YDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNKPATFTVNTK ddPTM_HeLa_A485_30min_R1 1 YDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNKPATFTVNTK 46 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 0 146.86 1.67E-26 26011000 17929 17048 15253 15403 23403 18679 29837 31351 14345 28865 FALSE FALSE TRUE 21917.2442 19041.6153 20895.71943 16244.42689 21072.91515 19657.00356 23462.0812 23662.11809 17223.90992 21669.48672 1.011433472 0.878729411 0.964292311 0.749645208 0.972469511 0.90712825 1.082724363 1.091955633 0.794846234 1 14.40337736 -6.712350957 24.86680733 1.000044665 0.90982853 0.124731593 0.100616535 198.7005649 100655.4093 0.03772021 0.029217903 1.94E-07 6.712350957 -0.090216134 YDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNKPATFTVNTK ddPTM_HeLa_A486_30min_R1 1 YDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNKPATFTVNTK 46 1 Q60FE5;P21333-2;P21333;A0A087WWY3;H0Y5F3 Q60FE5 FLNA Filamin-A 0 0 51.403 0.00058502 26633000 9885.2 13007 14039 2512.9 19470 11647 14276 13312 14908 10485 FALSE FALSE TRUE 9192.298527 11976.27795 19475.27678 5850.158195 17027.89105 10210.11156 10703.9938 10281.1482 16200.23744 7859.487754 1.169579852 1.523798792 2.477932072 0.744343446 2.166539548 1.299081044 1.361920031 1.308119374 2.061233244 1 12.94021957 YDNSLK ddPTM_HeLa_A485_30min_R1 2 YDNSLK 6 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 128.86 0.016935 370240000 753160 667270 581780 994560 930310 722400 1021800 879220 693440 1292720 FALSE FALSE TRUE 920697.8436 745301.422 797004.6319 1048890.294 837685.0699 760223.747 803484.0827 663589.9164 832607.0474 970468.6947 0.948714625 0.7679809 0.821257436 1.080807964 0.863175777 0.783357311 0.827934056 0.683782919 0.857943231 1 19.88832215 -6.006020451 24.93487328 0.812072356 0.899344033 0.083570161 0.106618791 578.9343301 2397782.487 0.033791784 0.037076647 9.86E-07 6.006020451 0.087271677 YDNSLK ddPTM_HeLa_A486_30min_R1 2 YDNSLK 6 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 124.34 0.018807 97951000 232190 240410 154908 94333 234590 282050 297030 269730 227680 309880 FALSE FALSE TRUE 215914.68 221359.036 214892.5262 219611.9913 205165.5347 247253.5387 222709.9523 208318.3672 247415.4857 232284.031 0.929528729 0.952967085 0.92512828 0.945445928 0.88325286 1.064444842 0.95878288 0.896826038 1.065142036 1 17.82553045 -6.241871983 24.99936745 0.988199781 0.92958389 0.328262703 0.049042822 1185.740974 1514908.011 0.016045291 0.016023287 5.73E-07 6.241871983 -0.058615891 YDS(ph)DGDKS(ph)DDLVVDVSNEDPAT(ph)PR ddPTM_HeLa_A485_30min_R1 2 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 3 0 YDS(1)DGDKS(1)DDLVVDVSNEDPAT(1)PR;Y(0.001)DS(0.999)DGDKS(1)DDLVVDVS(0.102)NEDPAT(0.898)PR ; 146.12 2.67E-09 591460000 302240 218870 141882 681270 286950 239790 414230 226820 175010 818540 TRUE FALSE FALSE 369472.2453 244464.9426 194370.056 718486.055 258380.2505 252345.0336 325726.3766 171192.0394 210132.9017 614493.0421 0.601263513 0.397831913 0.316309612 1.169233833 0.420477097 0.41065564 0.530073336 0.278590688 0.341961401 1 19.22903715 -10.20248403 3.597174908 1.000670827 0.497716565 0.278560187 0.243189466 136212175.8 224246878.9 1046174.888 0.063969425 6.27E-11 10.20248403 -0.502954262 YDS(ph)DGDKS(ph)DDLVVDVSNEDPAT(ph)PR ddPTM_HeLa_A486_30min_R1 2 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 3 0 Y(0.004)DS(0.996)DGDKS(1)DDLVVDVSNEDPAT(1)PR;Y(0.003)DS(0.997)DGDKS(1)DDLVVDVSNEDPAT(1)PR ; 157.86 3.99E-10 626870000 368560 335260 132395 406960 203112 478840 522190 438160 283000 967940 TRUE FALSE FALSE 342725.8472 308692.7766 183661.8897 947423.4466 177635.799 419765.5893 391532.5388 338400.533 307530.6679 725561.5238 0.472359457 0.42545362 0.253130691 1.305779614 0.244825274 0.578538932 0.539626932 0.466398123 0.423851952 1 19.46873843 -10.75523651 2.726601974 1.101456458 0.527754322 0.205153792 0.281354705 86360546.28 70777745.8 59111532.44 0.068849947 1.76E-11 10.75523651 -0.573702136 YDS(ph)DGDKS(ph)DDLVVDVSNEDPATPR ddPTM_HeLa_A486_30min_R1 1 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 Y(0.004)DS(0.996)DGDKS(1)DDLVVDVSNEDPATPR 112.6 5.71E-11 0 108910 119990 54082 102250 72324 137460 176040 146730 85028 266380 TRUE FALSE FALSE 101275.9714 110481.5554 75023.99877 238043.1674 63252.44953 120501.5828 131992.93 113322.7821 92398.2955 199676.7142 0.507199709 0.553302151 0.37572733 1.192142852 0.316774291 0.603483402 0.661033164 0.567531285 0.462739463 1 17.60730657 -10.50084532 2.945194688 1.013955148 0.587935158 0.234087467 0.22649952 84218208.12 94436730.29 9487234.899 0.05767675 3.16E-11 10.50084532 -0.42601999 YDS(ph)DGDKSDDLVVDVSNEDPAT(ph)PR ddPTM_HeLa_A486_30min_R1 1 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 YDS(1)DGDKSDDLVVDVS(0.002)NEDPAT(0.998)PR 130.56 3.33E-06 78583000 102900 124070 38537 101050 77507 152670 176900 140730 90785 279730 TRUE FALSE FALSE 95687.24138 114238.2413 53459.55846 235249.5068 67785.34934 133835.1276 132637.7489 108688.8511 98654.3169 209683.7873 0.456340677 0.54481199 0.254953228 1.121925113 0.323274156 0.638271224 0.632560823 0.518346471 0.470490915 1 17.67785579 -11.19906282 2.186188257 2.208662537 0.556384311 0.267178963 0.222825718 9260690.04 1805714.421 55345165.08 0.056497516 6.32E-12 11.19906282 -1.652278226 YDS(ph)DGDKSDDLVVDVSNEDPATPR ddPTM_HeLa_A485_30min_R1 2 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 YDS(1)DGDKSDDLVVDVSNEDPATPR;YDS(1)DGDKSDDLVVDVSNEDPATPR ; 247.36 1.45E-49 334530000 271430 213990 139641 635870 291490 238290 402120 321740 207340 793270 TRUE FALSE FALSE 331808.6671 239014.269 191300.0168 670605.968 262468.2321 250766.4959 316203.777 242832.7605 248951.2362 595522.3881 0.557172448 0.401352281 0.321230605 1.126080197 0.440736129 0.421086597 0.530968748 0.407764285 0.418038417 1 19.18379622 -10.0259354 4.61196491 1.000013188 0.515367881 0.315652063 0.214746315 63939210.05 46332415.39 8970.042781 0.052726056 9.42E-11 10.0259354 -0.484645306 YDS(ph)DGDKSDDLVVDVSNEDPATPR ddPTM_HeLa_A486_30min_R1 2 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 YDS(0.98)DGDKS(0.02)DDLVVDVSNEDPATPR;Y(0.001)DS(0.998)DGDKS(0.001)DDLVVDVSNEDPATPR ; 267.16 4.06E-62 532990000 460940 452410 183180 400859 346960 607210 791690 655470 366252 1082780 TRUE FALSE FALSE 428630.4863 416559.384 254112.2017 933220.0103 303441.0415 532298.6039 593600.7884 506233.7898 397999.0183 811644.8403 0.528101043 0.513228648 0.313083 1.149788632 0.373859386 0.655827004 0.73135534 0.623713433 0.490361053 1 19.63048905 -11.66082563 2.05092783 9.999464128 0.602906113 0.231925318 0.219448718 9103189.191 216382.7533 384261818.9 0.055743412 2.18E-12 11.66082563 -9.396558015 YDS(ph)PINSASHIPSSK ddPTM_HeLa_A485_30min_R1 3 YDSPINSASHIPSSK 15 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 YDS(1)PINSASHIPSSK;YDS(0.999)PINS(0.001)ASHIPSSK;YDS(0.994)PINS(0.006)ASHIPSSK ;; 188.1 3.92E-18 1310330000 1395000 1263320 976740 1339280 2242840 1492820 2053490 2100940 1317710 2347750 TRUE FALSE FALSE 1705312.937 1411054.285 1338076.772 1412441.475 2019534.975 1570981.747 1614745.086 1585681.171 1582162.31 1762499.132 0.967553916 0.80059857 0.759192868 0.801385629 1.145836011 0.8913376 0.916167876 0.899677703 0.897681185 1 20.74919112 YDS(ph)PINSASHIPSSK ddPTM_HeLa_A486_30min_R1 3 YDSPINSASHIPSSK 15 0 O14639-3;O14639-5;F8W8M4;O14639-2;O14639;J3QSX6;A0A0A0MRL6;A0A3B3IS55;O14639-4;O14639-6 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 YDS(1)PINSASHIPSSK;YDS(0.997)PINS(0.003)ASHIPSSK;YDS(0.992)PINS(0.008)ASHIPSSK ;; 150.85 3.69E-08 1573500000 2318940 2329570 1377340 340550 2489850 2514450 3013800 2886300 2014370 2479960 TRUE FALSE FALSE 2156394.281 2144966.389 1910682.934 792817.6104 2177549.796 2204242.724 2259715.363 2229152.497 2188977.213 1858961.874 1.159999197 1.153851738 1.02782255 0.426484062 1.171379481 1.185738532 1.215579187 1.199138362 1.177526685 1 20.82606575 -5.922018107 24.99998838 1.172679701 0.942751352 0.217906627 0.199520256 53.39689206 17115.66205 0.065181151 0.073908476 1.20E-06 5.922018107 -0.229928349 YDS(ph)SNQVK ddPTM_HeLa_A485_30min_R1 3 YDSSNQVK 8 0 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 0 YDS(0.97)S(0.03)NQVK;YDS(0.632)S(0.368)NQVK;YDS(0.962)S(0.038)NQVK ;; 104.14 0.0015266 1439750000 1489550 1289100 1004900 1929330 1748040 1407810 2113720 2088620 1388670 2636580 TRUE FALSE FALSE 1820895.259 1439849.031 1376654.327 2034724.413 1573999 1481520.755 1662106.454 1576382.67 1667363.331 1979329.129 0.919955773 0.727442956 0.695515621 1.027986899 0.795218429 0.748496414 0.839732226 0.796422711 0.842388114 1 20.9165801 -8.137164356 5.691704791 0.999999067 0.816332662 0.257415881 0.091666379 3.049884544 125.906697 0.088112251 0.022889509 7.29E-09 8.137164356 -0.183666406 YDS(ph)SNQVK ddPTM_HeLa_A486_30min_R1 2 YDSSNQVK 8 0 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 0 YDS(0.925)S(0.075)NQVK;YDS(0.904)S(0.096)NQVK ; 150.21 0.00023583 1339140000 2202140 2254860 1337600 1102770 2333510 2785900 3237500 2816300 2048570 3308400 TRUE FALSE FALSE 2047781.358 2076176.682 1855554.542 2567304.291 2040819.417 2442203.983 2427443.257 2175089.969 2226141.697 2479955.106 0.825733237 0.837183172 0.748221021 1.035222083 0.822925952 0.984777497 0.978825484 0.877068284 0.897654031 1 21.24188257 -5.249997532 24.99650945 0.935542386 0.807059547 0.496048834 0.063752398 653.1835638 1426979.56 0.016785767 0.02875192 5.62E-06 5.249997532 -0.128482839 YDSDGVWDPEKWHASLYPAS(ph)GR ddPTM_HeLa_A485_30min_R1 1 YDSDGVWDPEKWHASLYPASGR 22 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 YDSDGVWDPEKWHASLYPAS(1)GR 180.71 1.21E-19 100060000 113780 153640 137080 42669 171980 85671 120680 80912 130880 100540 TRUE FALSE FALSE 139089.9685 171606.8615 187791.5964 44999.89943 154857.0673 90156.60109 94895.73214 61068.20513 157146.4155 75477.2283 1.84280705 2.273624315 2.48805634 0.59620498 2.051705804 1.194487438 1.257276324 0.809094432 2.082037444 1 16.20375382 -5.243587005 24.9937333 1.303540938 2.208708789 0.441272364 0.472537075 750.6747679 1050960.539 0.121774593 0.210341469 5.71E-06 5.243587005 0.90516785 YDSDGVWDPEKWHASLYPAS(ph)GR ddPTM_HeLa_A486_30min_R1 1 YDSDGVWDPEKWHASLYPASGR 22 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 YDSDGVWDPEKWHASLYPAS(1)GR 128.06 1.30E-06 147530000 129540 148660 102240 14630 109690 79426 98898 84087 129620 37132 TRUE FALSE FALSE 120459.9149 136879.6402 141830.0661 34059.37936 95931.65738 69627.22766 74152.67436 64942.22571 140855.566 27833.90551 4.327812168 4.917730289 5.095586246 1.223665121 3.446575521 2.501525617 2.664113174 2.333205654 5.060574985 1 14.76455573 -5.239616228 24.95076493 2.693099956 4.794111942 0.458284356 1.081164192 706.9594441 808277.2093 0.278574543 0.481966531 5.76E-06 5.239616228 2.101011986 YEAVS(ph)PERLELER ddPTM_HeLa_A485_30min_R1 2 YEAVSPERLELER 13 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 YEAVS(1)PERLELER;YEAVS(1)PERLELER ; 188.44 1.15E-17 968230000 400700 510320 574350 458920 902550 578730 703110 778050 503260 559290 TRUE FALSE FALSE 489834.3326 569997.4848 786825.9657 483989.6376 812688.953 609031.4079 552884.8046 587232.0176 604259.6658 419869.296 1.166635277 1.357559341 1.873978339 1.152715005 1.935576049 1.450526185 1.316802181 1.398606717 1.439161357 1 18.67958077 -8.916890577 0.639294692 0.978933878 1.485572057 0.234966315 0.24724939 5.618299946 2.798857801 0.553470879 0.096241337 1.21E-09 8.916890577 0.506638179 YEAVS(ph)PERLELER ddPTM_HeLa_A486_30min_R1 3 YEAVSPERLELER 13 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 YEAVS(1)PERLELER;YEAVS(1)PERLELER;YEAVS(1)PERLELER ;; 269.91 1.10E-42 1135388000 734921 876900 841850 339875 1193860 823650 954900 1035330 710217 783700 TRUE FALSE FALSE 683406.833 807411.2504 1167836.866 791246.1763 1044114.946 722036.4373 715973.9201 799607.9601 771779.1814 587456.419 1.16333197 1.374418977 1.987954898 1.346901916 1.777348775 1.229089366 1.218769422 1.361135795 1.313764147 1 19.1641223 -6.297273263 24.70458534 1.246761254 1.536619219 0.298093993 0.232993019 724.2092712 499281.8489 0.082300609 0.07258501 5.04E-07 6.297273263 0.289857965 YEDDGIS(ph)DDEIEGK ddPTM_HeLa_A485_30min_R1 1 YEDDGISDDEIEGK 14 0 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 YEDDGIS(1)DDEIEGK 135.02 1.16E-05 125900000 170050 123560 104290 300050 186720 146450 212930 164590 142040 391760 TRUE FALSE FALSE 207877.0358 138009.2672 142871.2109 316440.9717 168129.5012 154117.8955 167435.766 124224.0444 170546.1251 294101.4418 0.706820866 0.469257363 0.485788883 1.075958587 0.571671802 0.524029718 0.569312972 0.422385024 0.579888776 1 18.16595433 -9.637146772 7.300701506 0.999999948 0.598051362 0.318158402 0.175387115 2.71E-10 0 0.175585708 0.04258579 2.31E-10 9.637146772 -0.401948586 YEDDGIS(ph)DDEIEGK ddPTM_HeLa_A486_30min_R1 1 YEDDGISDDEIEGK 14 0 I3VM54;Q9Y2K7;Q9Y2K7-3 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 YEDDGIS(1)DDEIEGK 196.95 1.05E-21 122620000 256540 275220 142100 147820 211240 324590 404040 326720 225930 447330 TRUE FALSE FALSE 238557.8708 253410.5649 197124.9256 344132.4304 184744.3095 284545.386 302944.9185 252332.9882 245513.7943 335315.6564 0.711442685 0.755737348 0.58787868 1.026293953 0.550956408 0.848589622 0.903461896 0.752523729 0.732187089 1 18.35516032 -14 0.159338879 1.842404224 0.703693705 0.231187545 0.131882624 201.1028723 1.843508638 53.85953142 0.549116599 1.00E-14 14 -1.138710519 YEDEVFGDS(ph)EPELDEES(ph)EDEVEEEQEER ddPTM_HeLa_A486_30min_R1 2 YEDEVFGDSEPELDEESEDEVEEEQEER 28 0 Q9UN86-2;Q9UN86;D6RB17 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 2 0 YEDEVFGDS(1)EPELDEES(1)EDEVEEEQEER;YEDEVFGDS(1)EPELDEES(1)EDEVEEEQEER ; 295.25 4.43E-92 388160000 336080 358190 248360 135709 309590 303830 301980 291560 300030 362130 TRUE FALSE FALSE 312522.5275 329805.7199 344531.6433 315937.4104 270758.3354 266346.5437 226421.41 225178.1527 326036.842 271450.2909 1.151306659 1.214976483 1.269225545 1.1638868 0.997450894 0.981198225 0.834117397 0.829537342 1.201092255 1 18.0503285 -5.764977662 2.789016159 0.952474594 1.213949718 0.549455434 0.100572982 0.192798095 3.076701736 0.032948528 0.041245039 1.72E-06 5.764977662 0.261475124 YEDKPEPEVDALGS(ph)PPALLK ddPTM_HeLa_A485_30min_R1 2 YEDKPEPEVDALGSPPALLK 20 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 YEDKPEPEVDALGS(1)PPALLK;YEDKPEPEVDALGS(1)PPALLK ; 141.49 1.29E-09 267920000 562220 398020 247010 791240 484240 484780 731340 592480 384870 961130 TRUE FALSE FALSE 687283.8994 444564.9767 338389.2779 834463.4377 436027.3653 510162.3312 575083.2345 447173.351 462109.8788 721537.9793 0.952526297 0.616135241 0.468983321 1.156506603 0.604302723 0.70704848 0.797024205 0.619750261 0.64045122 1 19.46071581 -10.06225649 4.560966541 1.000012894 0.725233408 0.15699763 0.188055497 122994322.4 0.736409454 18754.31805 0.044175893 8.66E-11 10.06225649 -0.274779486 YEDRYDR ddPTM_HeLa_A485_30min_R1 1 YEDRYDR 7 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 145.63 0.0015716 175910000 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 YEDRYDR ddPTM_HeLa_A486_30min_R1 2 YEDRYDR 7 1 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 131.06 0.0021387 301700000 519500 571620 433230 145717 509040 543350 467330 476060 529120 535760 FALSE FALSE TRUE 483085.7327 526322.7494 600988.2583 339236.5401 445191.4566 476317.0014 350399.0911 367671.5303 574984.5476 401602.2088 1.202896105 1.310557407 1.496476476 0.844707854 1.108538367 1.186041787 0.872502898 0.915511723 1.431726557 1 18.61540768 -5.2563978 24.99961358 1.048320098 1.334034731 0.358319943 0.174949265 471.3579571 2337307.439 0.047597914 0.079287928 5.54E-06 5.2563978 0.285714633 YEDSDKPFVDS(ph)PASR ddPTM_HeLa_A486_30min_R1 1 YEDSDKPFVDSPASR 15 1 E9PQ01;E9PKN0;O94913 E9PQ01 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 YEDSDKPFVDS(1)PASR 171.79 1.34E-12 150150000 331740 313290 188630 147380 327880 356860 442650 455050 259590 477510 TRUE FALSE FALSE 308486.7391 288463.7594 261672.5877 343108.0882 286754.233 312834.2415 331894.2881 351445.0487 282091.4702 357938.3879 0.861843126 0.805903388 0.731054831 0.958567451 0.801127352 0.873989078 0.927238596 0.981859059 0.788100633 1 18.44935175 -8.477225613 0.04444461 1.44463045 0.407610353 0.290862849 0.073118735 134.7962926 2.618089616 33.44057176 27.0322766 3.33E-09 8.477225613 -1.037020096 YEEEEEQS(ph)R ddPTM_HeLa_A486_30min_R1 1 YEEEEEQSR 9 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 1 0 YEEEEEQS(1)R 111.63 0.0012857 0 82266 106130 96374 31151 104010 90850 101660 103970 80297 99517 TRUE FALSE FALSE 76499.57822 97719.87228 133692.5938 72521.10228 90964.09595 79641.8507 76223.59275 80298.30065 87257.20861 74597.29545 1.025500694 1.30996535 1.792190896 0.972167983 1.219402063 1.067623836 1.021801022 1.076423752 1.169710082 1 16.18683571 YEEIVK ddPTM_HeLa_A485_30min_R1 2 YEEIVK 6 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ; ; 129.96 0.016479 213396000 328720 347750 278900 389030 445810 394570 519260 514360 340690 529140 FALSE FALSE TRUE 401842.6299 388416.3375 382076.716 410281.7238 401423.5911 415229.0751 408315.859 388212.4035 409063.358 397235.1361 1.011598908 0.97779955 0.961840183 1.032843489 1.010544019 1.045297954 1.027894619 0.977286167 1.029776374 1 18.59963371 -5.267965173 24.98622624 1.017997943 0.983151547 0.347562376 0.021286999 550.7101915 2108578.893 0.006066731 0.009246297 5.40E-06 5.267965173 -0.034846396 YEEPEYDIPAFGFDS(ph)EPELSEEPVEDR ddPTM_HeLa_A486_30min_R1 1 YEEPEYDIPAFGFDSEPELSEEPVEDR 27 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 YEEPEYDIPAFGFDS(0.992)EPELS(0.008)EEPVEDR 106.45 0.00036573 39081000 48640 66207 54812 21885 67037 54263 63420 65914 55231 56379 TRUE FALSE FALSE 45230.58718 60960.5162 76036.67432 50949.38601 58628.59436 47568.58277 47551.64521 50906.82109 60018.46755 42261.33143 1.070259399 1.442465586 1.799202054 1.205579291 1.387286968 1.125581735 1.125180954 1.204572108 1.420174555 1 15.3670506 -5.903574983 1.933618647 1.189601942 1.425289118 0.186717909 0.203364118 0.560379615 4.283062149 0.074631432 0.087827048 1.25E-06 5.903574983 0.235687176 YEEQERS(ph)PR ddPTM_HeLa_A485_30min_R1 2 YEEQERSPR 9 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 YEEQERS(1)PR;YEEQERS(1)PR ; 101.47 0.00082039 1190120000 1191290 1837850 1187730 1006540 977660 1228150 1193360 1254950 989510 1045910 TRUE FALSE FALSE 1456288.351 2052770.57 1627120.753 1061524.732 880320.7376 1292454.035 938388.8871 947171.5448 1188095.581 785183.8855 1.854709932 2.61438194 2.07227986 1.351944113 1.121165059 1.646052675 1.1951199 1.206305379 1.513143103 1 19.58267104 -5.220444316 3.888144021 1.297994528 2.253435395 0.735938487 0.245274721 0.10438638 3.407619929 0.064974547 0.11417369 6.02E-06 5.220444316 0.955440867 YEEQERS(ph)PR ddPTM_HeLa_A486_30min_R1 2 YEEQERSPR 9 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 YEEQERS(1)PR;YEEQERS(1)PR ; 110.8 0.0004382 1229320000 1843550 1772650 1067860 445710 1091810 1189380 1209210 1118450 1298040 1722580 TRUE FALSE FALSE 1714326.665 1632178.758 1481363.99 1037635.405 954865.0091 1042646.388 906652.8683 863803.3506 1410555.152 1291234.756 1.327664592 1.264044939 1.147246063 0.803599346 0.739497605 0.807480114 0.702159591 0.668974675 1.092407981 1 20.30031989 -5.122824334 2.687700858 0.804320353 1.292388946 0.701980509 0.125573383 0.141188814 1.972084162 0.035258541 0.071918931 7.54E-06 5.122824334 0.488068592 YEKEFGDGS(ph)DENEMEEHELK ddPTM_HeLa_A485_30min_R1 1 YEKEFGDGSDENEMEEHELK 20 1 A0A2R8Y534;A0A2R8Y4Q0;Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y4N5 A0A2R8Y534 DNAJC21 DnaJ homolog subfamily C member 21 1 0 YEKEFGDGS(1)DENEMEEHELK 250.22 3.97E-47 418280000 495690 506340 151180 480340 223000 416310 571860 597990 197510 485440 TRUE FALSE FALSE 605954.5304 565552.0584 207107.7731 506579.7579 200797.337 438107.3479 449677.4393 451332.0149 237148.4453 364428.7419 1.662751756 1.551886538 0.56830801 1.390065326 0.550992043 1.202175618 1.233924188 1.238464377 0.650740236 1 18.47527722 -4.625082928 8.208279826 1.004944065 1.634348353 0.435420959 0.285948459 0.200964578 14.08649993 0.069346204 0.184764534 2.37E-05 4.625082928 0.629404288 YEKEFGDGS(ph)DENEMEEHELK ddPTM_HeLa_A486_30min_R1 1 YEKEFGDGSDENEMEEHELK 20 1 A0A2R8Y534;A0A2R8Y4Q0;Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y4N5 A0A2R8Y534 DNAJC21 DnaJ homolog subfamily C member 21 1 0 YEKEFGDGS(1)DENEMEEHELK 223.09 1.17E-35 365960000 751260 464360 112020 205820 197030 428900 525700 430530 294450 1151500 TRUE FALSE FALSE 698600.5535 427562.4224 155397.144 479159.3616 172316.6602 375986.6787 394164.2997 332507.7174 319973.1631 863156.905 0.809355228 0.495347277 0.180033483 0.555124287 0.199635384 0.435594822 0.456654285 0.385222797 0.370701041 1 19.71926331 -10.43920579 6.195882653 1.000193559 0.42266524 0.502800991 0.169231898 0.000446049 4.04E-05 0.161528957 0.039163698 3.64E-11 10.43920579 -0.577528319 YEKFGESEEVEMEVES(ph)DEEDDKQEK ddPTM_HeLa_A486_30min_R1 2 YEKFGESEEVEMEVESDEEDDKQEK 25 2 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 YEKFGESEEVEMEVES(1)DEEDDKQEK;YEKFGESEEVEMEVES(1)DEEDDKQEK ; 175.28 8.21E-15 527500000 306130 207134 84944 350007 164888 232601 489130 439650 128703 836490 TRUE FALSE FALSE 284671.8679 190719.9475 117836.5917 814833.9844 144206.2095 203905.0535 366744.5005 339551.2925 139859.0797 627027.4594 0.454002235 0.304165224 0.187928917 1.29951882 0.229983882 0.32519318 0.584893843 0.541525395 0.223050965 1 19.2581691 -10.13936948 4.062371686 1.000149689 0.468352843 0.21489334 0.308716936 277409111.6 518179645.3 613501.7818 0.07644189 7.25E-11 10.13936948 -0.531796846 YELISETGGSHDKR ddPTM_HeLa_A485_30min_R1 1 YELISETGGSHDKR 14 1 Q12906;Q12906-5;Q12906-2;Q12906-3;Q96SI9-2;Q96SI9;Q12906-7;Q12906-4;Q12906-6 Q12906;Q12906-7 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein 0 0 86.467 0.0038859 4523600 8790.6 9937.4 9604.1 9727.6 12972 9389.8 13527 11343 11144 17038 FALSE FALSE TRUE 10746.03864 11099.49249 13157.05625 10258.99416 11680.46213 9881.435409 10636.84594 8561.111465 13380.49858 12790.74016 0.840142049 0.867775621 1.028639163 0.802064152 0.913196733 0.77254602 0.831605193 0.669321037 1.046108232 1 13.64281213 -4.265572602 8.940001457 0.869107804 0.840022965 0.001480615 0.114454203 0.858679409 1273.493259 0.027534975 0.143939192 5.43E-05 4.265572602 -0.029084838 YEMACAIADAFNLPSSHLRPITDS(ph)PVLGAQR ddPTM_HeLa_A486_30min_R1 1 YEMACAIADAFNLPSSHLRPITDSPVLGAQR 31 1 Q9NZL9-2;Q9NZL9 Q9NZL9-2 MAT2B Methionine adenosyltransferase 2 subunit beta 1 0 YEMACAIADAFNLPS(0.075)S(0.075)HLRPIT(0.06)DS(0.79)PVLGAQR 93.972 0.00015264 26214000 13737 12882 8283 3166.9 8977.4 9311.8 10730 9102.4 8107.9 8931.9 TRUE FALSE FALSE 12774.10724 11861.1834 11490.39943 7372.703246 7851.370781 8163.004791 8045.24051 7029.982224 8810.6993 6695.294103 1.907923243 1.771570184 1.716190394 1.101176906 1.172670037 1.219215268 1.201626155 1.049988561 1.315954036 1 12.70893171 -5.192434585 4.158320988 1.158386049 1.817807181 0.912524322 0.092069639 0.057819468 1.959899051 0.024626973 0.043933517 6.42E-06 5.192434585 0.659421133 YEMACAIADAFNLPSSHLRPITDS(ph)PVLGAQRPR ddPTM_HeLa_A485_30min_R1 2 YEMACAIADAFNLPSSHLRPITDSPVLGAQRPR 33 2 Q9NZL9-2;Q9NZL9 Q9NZL9-2 MAT2B Methionine adenosyltransferase 2 subunit beta 1 0 YEMACAIADAFNLPS(0.033)S(0.224)HLRPIT(0.123)DS(0.621)PVLGAQRPR;YEMACAIADAFNLPSSHLRPIT(0.036)DS(0.964)PVLGAQRPR ; 250.6 8.71E-52 3059400000 103253 134913 152776 87539 179359 158381 207210 239650 112575 146468 TRUE FALSE FALSE 126221.2736 150689.9018 209294.1999 92321.03391 161501.3882 166673.5843 162937.8907 180875.4617 135167.7699 109956.2231 1.147922964 1.370453599 1.903432056 0.83961627 1.46877897 1.515817654 1.481843284 1.644977033 1.229287129 1 16.74656973 -8.002947142 23.96596623 0.999999977 1.424147895 0.198858029 0.267032463 84.41184615 686443.5657 0.252273049 0.065136621 9.93E-09 8.002947142 0.424147918 YEMACAIADAFNLPSSHLRPITDS(ph)PVLGAQRPR ddPTM_HeLa_A486_30min_R1 3 YEMACAIADAFNLPSSHLRPITDSPVLGAQRPR 33 2 Q9NZL9-2;Q9NZL9 Q9NZL9-2 MAT2B Methionine adenosyltransferase 2 subunit beta 1 0 YEMACAIADAFNLPS(0.001)S(0.003)HLRPIT(0.25)DS(0.747)PVLGAQRPR;YEMACAIADAFNLPSS(0.002)HLRPIT(0.102)DS(0.896)PVLGAQRPR;YEMACAIADAFNLPS(0.058)S(0.058)HLRPIT(0.073)DS(0.812)PVLGAQRPR ;; 249.41 1.43E-51 2520820000 261138 397357 395833 37156.4 541456 374535 424265 399355 407756 250499 TRUE FALSE FALSE 242833.5747 365868.9842 549110.1384 86501.97698 473541.5396 328328.6797 318109.4096 308430.5844 443100.6184 187772.4199 1.293233452 1.948470304 2.924338615 0.46067456 2.521890807 1.748545819 1.694122117 1.642576607 2.359774767 1 17.51862565 -10.30955126 5.225598491 0.999791685 1.844749999 0.132555665 0.647510083 0.001482659 0.000195901 0.591519694 0.143430145 4.90E-11 10.30955126 0.844958314 YEPQS(ph)PGYEPR ddPTM_HeLa_A485_30min_R1 2 YEPQSPGYEPR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 YEPQS(0.996)PGY(0.004)EPR;YEPQS(1)PGYEPR ; 107.65 0.00065298 1424290000 412580 531200 481230 549730 638800 453030 668930 689940 531620 765250 TRUE FALSE FALSE 504356.9976 593319.2192 659257.0027 579760.3579 575198.829 476749.9503 526007.6408 520731.1332 638311.2577 574487.2584 0.877925472 1.032780467 1.147557223 1.009178793 1.001238619 0.829870364 0.915612371 0.906427646 1.111097328 1 19.13191537 -6.017441708 23.52282397 0.941231783 1.024567598 0.093904664 0.091384726 679.3141512 916159.5597 0.030548163 0.031268299 9.61E-07 6.017441708 0.083335816 YEPQS(ph)PGYEPR ddPTM_HeLa_A486_30min_R1 2 YEPQSPGYEPR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 YEPQS(1)PGYEPR;YEPQS(1)PGYEPR ; 107.99 0.00063969 1488220000 873900 931940 757740 303880 920830 846180 970530 883620 757130 887140 TRUE FALSE FALSE 812644.1228 858089.6803 1051157.221 707447.9972 805330.915 741786.9149 727693.1288 682439.0153 822758.638 664994.3697 1.222031584 1.290371347 1.580700934 1.063840582 1.211034186 1.115478489 1.094284647 1.026232772 1.23724151 1 19.3429826 -5.292739776 24.98946256 1.112140256 1.356968383 0.534917167 0.109885439 506.2955023 404212.6918 0.030520125 0.045274073 5.10E-06 5.292739776 0.244828126 YEPSDKDRQS(ph)PPPAK ddPTM_HeLa_A485_30min_R1 4 YEPSDKDRQSPPPAK 15 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK ;;; 164.53 2.58E-12 8904400000 6671100 3558420 3348540 12045200 7440100 4519570 7932700 4964660 5556270 15954800 TRUE FALSE FALSE 8155063.18 3974546.265 4587304.29 12703198.78 6699337.52 4756207.697 6237813.841 3747069.351 6671362.424 11977561.99 0.680861697 0.331832661 0.382991488 1.060583013 0.55932397 0.39709314 0.520791614 0.31284074 0.556988345 1 23.51383094 -10.27293193 3.70073685 1.000959505 0.528687548 0.31163604 0.207787812 169011349.7 265528747 1809748.788 0.052684058 5.33E-11 10.27293193 -0.472271957 YEPSDKDRQS(ph)PPPAK ddPTM_HeLa_A486_30min_R1 5 YEPSDKDRQSPPPAK 15 2 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK;YEPSDKDRQS(1)PPPAK ;;;; 160.55 3.32E-12 11870060000 6678980 8441410 3632810 4377780 7652380 10538150 12031590 11163930 6984830 10836020 TRUE FALSE FALSE 6210817.992 7772481.929 5039531.322 10191693.08 6692547.145 9238060.197 9021158.925 8622146.846 7590280.688 8122610.061 0.764633282 0.956894627 0.620432507 1.2547313 0.823940469 1.137326565 1.110623169 1.06149954 0.934463261 1 22.95351196 -5.257065785 24.9999201 1.045880943 0.798277599 0.452182957 0.133458997 347.8692608 1988449.38 0.034654087 0.057427211 5.53E-06 5.257065785 -0.247603343 YES(ph)QLSTNEEKVDTDDRTEGYLR ddPTM_HeLa_A486_30min_R1 1 YESQLSTNEEKVDTDDRTEGYLR 23 2 K7EQ91;Q13433-2;Q13433 K7EQ91 SLC39A6 Zinc transporter ZIP6 1 0 YES(0.558)QLS(0.324)T(0.119)NEEKVDTDDRTEGYLR 82.726 0.0016709 42742000 57124 58132 53188 13594 93235 72748 59787 63488 67004 78330 TRUE FALSE FALSE 53119.90259 53525.40861 73783.81802 31647.519 81540.59692 63773.09141 44827.66024 49033.16833 72811.96067 58715.65816 0.904697388 0.911603655 1.256629328 0.53899624 1.388736829 1.086134319 0.763470284 0.835095269 1.240077399 1 15.84145767 -4.572705536 24.99996232 1.003602743 0.90641037 0.028651832 0.240211558 451.6118546 226588.5496 0.059764035 0.15812084 2.67E-05 4.572705536 -0.097192373 YESQEPLAGQES(ph)PLPLATR ddPTM_HeLa_A485_30min_R1 4 YESQEPLAGQESPLPLATR 19 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR ;;; 308.68 1.98E-89 4537500000 2485370 3317700 2962030 2507440 3718070 3005740 3462440 3938470 2909610 3546210 TRUE FALSE FALSE 3038231.982 3705676.155 4057808.157 2644415.098 3347885.896 3163115.899 2722661.408 2972554.057 3493542.038 2662205.11 1.141246394 1.391957419 1.52422822 0.993317565 1.257561216 1.188156347 1.022709106 1.116575896 1.312273808 1 21.3441903 -5.265458629 24.99991686 1.135699352 1.35642535 0.375455947 0.13278642 365.9544544 2276254.739 0.036874733 0.056999018 5.43E-06 5.265458629 0.220725998 YESQEPLAGQES(ph)PLPLATR ddPTM_HeLa_A486_30min_R1 4 YESQEPLAGQESPLPLATR 19 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR ;;; 394.57 4.79E-146 3746830000 2572590 2874110 2075830 843912 3174160 2662830 2930340 3019630 2482000 2851570 TRUE FALSE FALSE 2392264.726 2646355.056 2879646.969 1964669.785 2776027.255 2334317.108 2197137.938 2332126.167 2697141.758 2137518.311 1.119178588 1.238050239 1.347191719 0.919135885 1.298715075 1.092068824 1.027891984 1.091043831 1.261809896 1 21.02750535 -5.237425772 24.99983011 1.107571471 1.23513116 0.214763451 0.118439183 1307.634074 1361335.56 0.031232231 0.05406192 5.79E-06 5.237425772 0.127559688 YESQLS(ph)TNEEKVDTDDRTEGYLR ddPTM_HeLa_A486_30min_R1 2 YESQLSTNEEKVDTDDRTEGYLR 23 2 K7EQ91;Q13433-2;Q13433 K7EQ91 SLC39A6 Zinc transporter ZIP6 1 0 YES(0.007)QLS(0.955)T(0.038)NEEKVDTDDRTEGYLR;YES(0.2)QLS(0.631)T(0.169)NEEKVDTDDRTEGYLR ; 157.96 1.20E-10 449990000 160109 145592 98247 81667.9 181350 221539 228921 188072 180009 371545 TRUE FALSE FALSE 148886.1859 134054.7597 136290.8695 190126.9985 158603.392 194207.7706 171642.5445 145252.1112 195612.3251 278507.7136 0.534585502 0.481332305 0.489361202 0.682663313 0.56947576 0.69731559 0.616293683 0.521537121 0.702358734 1 18.08735776 -14 0.176264943 2.664722224 0.496386563 0.779584042 0.069006046 64.08836441 0.612359854 37.28526273 0.240521786 1.00E-14 14 -2.168335661 YETPSDAIEVIS(ph)PAS(ph)SPAPPQEK ddPTM_HeLa_A485_30min_R1 1 YETPSDAIEVISPASSPAPPQEK 23 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 2 0 YETPSDAIEVIS(0.999)PAS(0.5)S(0.5)PAPPQEK 82.406 0.0036523 104640000 22624 23051 21562 23280 25102 25042 26764 26174 22589 33743 TRUE FALSE FALSE 27656.63075 25746.61393 29538.68107 24551.72745 22602.75674 26353.1604 21045.65276 19754.78546 27122.4051 25331.49109 1.091788503 1.01638762 1.166085366 0.969217618 0.892278968 1.040331984 0.830809867 0.779850874 1.070699115 1 14.62864438 -5.453078872 5.997724382 0.925011295 1.083062052 0.366850444 0.090903496 0.238221693 15.75772824 0.025741766 0.038097416 3.52E-06 5.453078872 0.158050757 YEWDVAEAR ddPTM_HeLa_A486_30min_R1 1 YEWDVAEAR 9 0 P13639 P13639 EEF2 Elongation factor 2 0 0 106.91 0.0054101 0 200220 249250 181620 111150 271500 215460 256630 234740 207000 308640 FALSE FALSE TRUE 186185.6119 229498.5222 251948.128 258762.8172 237445.9384 188878.7358 192418.4596 181294.8263 224942.9267 231354.5351 0.804763182 0.991977625 1.089013137 1.118468748 1.026329301 0.816403862 0.831703859 0.783623395 0.972286653 1 17.81974585 -6.2524972 24.57532029 0.864211285 1.016173092 0.269870657 0.100552647 615.5120816 1691580.128 0.034534653 0.034032332 5.59E-07 6.2524972 0.151961807 YEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLS(ph)PFLAAR ddPTM_HeLa_A485_30min_R1 1 YEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAAR 45 3 Q9ULP9-2;Q9ULP9 Q9ULP9-2 TBC1D24 TBC1 domain family member 24 1 0 YEWVVIKHPELTKPPPLMAAEPTAPLSHSAS(0.08)S(0.369)DPADRLS(0.551)PFLAAR 194.25 9.98E-24 473460000 132400 188630 122410 88797 148060 238110 275400 387290 123760 181780 TRUE FALSE FALSE 161851.9232 210688.6376 167694.5529 93647.75526 133318.6265 250577.0714 216558.5402 292306.5203 148597.4968 136465.5914 1.186027346 1.543895684 1.228841286 0.686237126 0.976939499 1.836192324 1.586909476 2.141979654 1.088900838 1 17.05817771 -6.255660632 24.92281231 1.605677252 1.129155379 0.218085158 0.371421603 623.2408673 2687940.662 0.124930167 0.121681144 5.55E-07 6.255660632 -0.476521873 YEYDPDIS(ph)PPR ddPTM_HeLa_A485_30min_R1 4 YEYDPDISPPR 11 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR ;;; 156.69 2.69E-07 1702030000 964610 1184680 1065860 957000 1193500 1046340 1133980 1041530 1001640 1244520 TRUE FALSE FALSE 1179184.167 1323218.021 1460165.968 1009278.487 1074670.949 1101124.744 891695.9092 786093.1344 1202659.96 934284.0677 1.26212595 1.416290897 1.562871528 1.080269397 1.150261453 1.178575963 0.954416264 0.841385572 1.287252991 1 19.83350174 -5.280782453 22.76778983 1.066713407 1.414015543 0.577205743 0.134678389 176.6922534 207975.4389 0.038880964 0.057813171 5.24E-06 5.280782453 0.347302135 YEYDPDIS(ph)PPR ddPTM_HeLa_A486_30min_R1 4 YEYDPDISPPR 11 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR ;;; 116.24 0.0003255 1022480000 775850 877100 701110 247085 874720 722920 747970 755230 711380 788150 TRUE FALSE FALSE 721466.9215 807595.4017 972598.5684 575226.367 765004.4612 633733.4805 560819.9948 583280.6156 773042.9912 590792.11 1.221185776 1.366970526 1.646261945 0.973652757 1.294879279 1.072684401 0.949267916 0.987285723 1.308485638 1 19.17229103 -5.275974631 24.98685186 1.085953515 1.407022545 0.48948161 0.153342548 662.0427997 1138084.291 0.043564872 0.064947007 5.30E-06 5.275974631 0.321069029 YFAES(ph)DEEEDDVDFAMFN ddPTM_HeLa_A485_30min_R1 1 YFAESDEEEDDVDFAMFN 18 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 Y(0.446)FAES(0.554)DEEEDDVDFAMFN 66.498 0.0043119 0 6852.2 8804.3 7095.9 8908.3 12481 10226 11313 10814 9240 14709 TRUE FALSE FALSE 8376.44825 9833.886298 9720.968695 9394.937872 11238.34782 10761.41755 8895.885131 8161.849544 11094.38325 11042.317 0.75857705 0.890563665 0.880337768 0.850812187 1.017752689 0.974561548 0.805617619 0.73914284 1.004715156 1 13.4307553 -9.432376105 0.014971171 1.875065268 6.32E-06 0.160728027 0.090441688 4642.319952 16.86156279 1129.342305 983.7055578 3.70E-10 9.432376105 -1.875058948 YFAES(ph)DEEEDDVDFAMFN ddPTM_HeLa_A486_30min_R1 2 YFAESDEEEDDVDFAMFN 18 0 Q02880;Q02880-2 Q02880 TOP2B DNA topoisomerase 2-beta 1 0 Y(0.452)FAES(0.548)DEEEDDVDFAMFN;YFAES(1)DEEEDDVDFAMFN ; 176.23 7.02E-12 19521300 18835.5 27511.1 21082.2 12841.9 24231.5 21694.7 25684.8 23331.4 26140.2 19852.3 TRUE FALSE FALSE 17515.22872 25331.02024 29245.79244 29896.59219 21192.15932 19018.22849 19258.19137 18019.34954 28406.05358 14881.15486 1.177007354 1.702221398 1.965290511 2.009023659 1.424093729 1.278007565 1.294132851 1.210883813 1.908860827 1 13.86119887 -5.933376018 9.189894518 1.349021806 1.730070455 0.259820606 0.30036774 0.454266382 58.2273486 0.094448523 0.107151848 1.17E-06 5.933376018 0.38104865 YFDDEFT(ph)AQSITITPPDRYDSLGLLELDQR ddPTM_HeLa_A486_30min_R1 1 YFDDEFTAQSITITPPDRYDSLGLLELDQR 30 1 P31751-2;P31751 P31751-2 AKT2 RAC-beta serine/threonine-protein kinase 1 0 YFDDEFT(0.27)AQS(0.242)IT(0.242)IT(0.242)PPDRY(0.001)DS(0.002)LGLLELDQR 51.868 0.035005 207520000 12195 13411 12727 5833 15148 12519 11941 18277 12816 15218 TRUE FALSE FALSE 11340.19348 12348.26352 17655.23524 13579.51878 13247.99659 10974.53306 8953.235501 14115.72608 13926.9012 11407.31375 0.994116032 1.082486534 1.547711901 1.190422135 1.161359886 0.962061122 0.784867998 1.237427706 1.220874739 1 13.47767148 -6.056419948 4.536239734 1.040289017 1.215970944 0.156885511 0.179568614 0.430480842 18.33743234 0.064510283 0.066384268 8.78E-07 6.056419948 0.175681927 YFDDEFTAQSITIT(ph)PPDR ddPTM_HeLa_A485_30min_R1 4 YFDDEFTAQSITITPPDR 18 0 P31751-2;P31751;M0R283;M0R0P9 P31751-2 AKT2 RAC-beta serine/threonine-protein kinase 1 0 YFDDEFTAQSITIT(1)PPDR;YFDDEFTAQSIT(0.003)IT(0.997)PPDR;YFDDEFTAQSIT(0.001)IT(0.999)PPDR;YFDDEFT(0.084)AQS(0.228)IT(0.026)IT(0.662)PPDR ;;; 198.42 1.94E-24 177128000 141485 143847.9 169661 177576.9 172556.3 118368 153015.7 112536.4 147970.2 205000.5 TRUE FALSE FALSE 172957.8501 160669.6606 232425.6641 187277.4764 155375.9889 124565.5654 120322.6457 84936.67145 177666.4619 153897.6481 1.123849859 1.044003353 1.510261313 1.216896286 1.009606 0.809405257 0.781835507 0.551903635 1.154445595 1 17.23161166 -5.962843574 2.856137295 0.828344283 1.231659027 0.459404909 0.184437583 0.226075042 3.760002604 0.062837603 0.069934792 1.09E-06 5.962843574 0.403314744 YFDDEFTAQSITIT(ph)PPDR ddPTM_HeLa_A486_30min_R1 4 YFDDEFTAQSITITPPDR 18 0 P31751-2;P31751;M0R283;M0R0P9 P31751-2 AKT2 RAC-beta serine/threonine-protein kinase 1 0 YFDDEFTAQSIT(0.015)IT(0.985)PPDR;YFDDEFTAQSITIT(1)PPDR;YFDDEFTAQSIT(0.001)IT(0.999)PPDR;YFDDEFTAQSITIT(1)PPDR ;;; 145.69 2.32E-07 267364000 167875 209555 163794 66723.7 167552 177433 189240 181828 204922 189280 TRUE FALSE FALSE 156107.8294 192949.0986 227219.4234 155336.1456 146536.0658 155543.1205 141890.1504 140429.7337 222684.804 141883.056 1.100257027 1.359916427 1.601455662 1.094818155 1.032794683 1.096276926 1.000050002 0.9897569 1.569495402 1 17.11434278 -5.324948088 24.9887882 1.102852059 1.354481104 0.24249477 0.195541568 281.307939 110685.5312 0.054810902 0.081297727 4.73E-06 5.324948088 0.251629045 YFDDEFTAQSITIT(ph)PPDRYDSLGLLELDQR ddPTM_HeLa_A485_30min_R1 3 YFDDEFTAQSITITPPDRYDSLGLLELDQR 30 1 P31751-2;P31751 P31751-2 AKT2 RAC-beta serine/threonine-protein kinase 1 0 YFDDEFTAQSITIT(1)PPDRYDSLGLLELDQR;YFDDEFTAQSITIT(0.999)PPDRYDS(0.001)LGLLELDQR;YFDDEFTAQSIT(0.004)IT(0.996)PPDRYDSLGLLELDQR ;; 222.52 1.18E-38 907430000 150247 198889 193957 164789 238235 196915 229081 261516 178827 211352 TRUE FALSE FALSE 183668.9268 222147.3384 265709.7655 173791.0058 214515.4869 207225.1649 180135.9729 197378.791 214715.9386 158665.836 1.15758333 1.400095597 1.674650146 1.095327199 1.351995441 1.306047792 1.135316697 1.243990489 1.353258798 1 17.27563199 -13.79822695 0.14049463 7.97E-09 1.416370456 0.255142689 0.156888399 179.6474722 1.625869542 50.51229524 0.980101068 1.59E-14 13.79822695 1.416370448 YFDDEFTAQSITIT(ph)PPDRYDSLGLLELDQR ddPTM_HeLa_A486_30min_R1 1 YFDDEFTAQSITITPPDRYDSLGLLELDQR 30 1 P31751-2;P31751 P31751-2 AKT2 RAC-beta serine/threonine-protein kinase 1 0 YFDDEFT(0.001)AQS(0.031)IT(0.031)IT(0.936)PPDRYDSLGLLELDQR 103.01 0.00028771 240410000 20395 22363 21740 8216.7 25414 21718 21477 24514 20226 20745 TRUE FALSE FALSE 18965.41582 20590.87444 30158.31022 19128.89285 22226.33914 19038.65397 16103.22744 18932.69734 21979.20597 15550.31697 1.219616028 1.324144998 1.939401639 1.230128806 1.429317433 1.224325781 1.035556218 1.217511988 1.413424948 1 13.92465637 -6.161939476 1.984699003 1.17816999 1.457497593 0.248810805 0.216278674 0.504074566 3.913275057 0.086212419 0.084707061 6.89E-07 6.161939476 0.279327603 YFDNKDDDS(ph)DTETSNDLPK ddPTM_HeLa_A485_30min_R1 4 YFDNKDDDSDTETSNDLPK 19 1 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 0 YFDNKDDDS(1)DTETSNDLPK;YFDNKDDDS(0.998)DT(0.001)ETSNDLPK;YFDNKDDDS(0.985)DT(0.01)ET(0.004)SNDLPK;YFDNKDDDS(0.893)DT(0.106)ET(0.001)SNDLPK ;;; 178.69 2.67E-18 1246760000 1056780 696441 459427 2229360 1094580 993250 1991030 1776130 727677 2891990 TRUE FALSE FALSE 1291857.065 777883.7167 629388.1657 2351144.292 985599.7719 1045255.034 1565630.175 1340531.333 873715.0993 2171070.116 0.595032402 0.358295069 0.289897669 1.082942589 0.453969572 0.481446926 0.72113294 0.617451884 0.402435229 1 21.04997489 -11.16786645 2.382105891 2.107059929 0.559204396 0.278461984 0.214426401 18202641.06 4167840.105 108767139.1 0.056277536 6.79E-12 11.16786645 -1.547855533 YFDNKDDDS(ph)DTETSNDLPK ddPTM_HeLa_A486_30min_R1 3 YFDNKDDDSDTETSNDLPK 19 1 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 0 YFDNKDDDS(0.894)DT(0.099)ET(0.006)S(0.001)NDLPK;YFDNKDDDS(0.995)DT(0.002)ET(0.001)S(0.002)NDLPK;YFDNKDDDS(1)DTETSNDLPK ;; 164.43 1.04E-12 949770000 1011450 839330 302622 790090 703380 1236110 1747480 1530980 677030 2410970 TRUE FALSE FALSE 940552.5781 772818.434 419805.3429 1839369.449 615155.5216 1083611.316 1310242.021 1182409.275 735715.5055 1807247.419 0.520433765 0.427621822 0.232289911 1.017774008 0.34038257 0.599592123 0.724993162 0.654259767 0.407091745 1 20.7853626 -14 0.166868979 2.653909422 0.445917064 0.289521978 0.211297424 173.1446265 1.619797135 95.45125274 0.793449353 1.00E-14 14 -2.207992358 YFDS(ph)GDYNMAK ddPTM_HeLa_A485_30min_R1 21 YFDSGDYNMAK 11 0 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;O43768-6;O43768-5;O43768-7;P56211;H3BMD8;P56211-2;H3BTD3;H3BQ52 O43768-2;P56211 ENSA;ARPP19 Alpha-endosulfine;cAMP-regulated phosphoprotein 19 1 0 YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK ;;;;;;;;;;;;;;;;;;;; 288.52 7.01E-36 1.29E+11 46799060 45228080 37496410 54756460 62493080 49369260 73611330 71799320 43804370 67621370 TRUE FALSE FALSE 57209349.44 50517110.52 51367892.41 57747666.76 56271049.53 51954158.11 57883668 54190424.19 52595505.26 50764606.94 1.12695346 0.995124627 1.011883978 1.137557646 1.108470112 1.023432688 1.140236702 1.067484365 1.036066434 1 25.59731967 -3.918542281 18.15718289 1.063879736 3.027602402 0.127477417 0.0521355 6935735.744 18051347.72 0.013187367 544700852.4 0.000120631 3.918542281 1.963722667 YFDS(ph)GDYNMAK ddPTM_HeLa_A486_30min_R1 15 YFDSGDYNMAK 11 0 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;O43768-6;O43768-5;O43768-7;P56211;H3BMD8;P56211-2;H3BTD3;H3BQ52 O43768-2;P56211 ENSA;ARPP19 Alpha-endosulfine;cAMP-regulated phosphoprotein 19 1 0 YFDS(0.999)GDY(0.001)NMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK ;;;;;;;;;;;;;; 311.92 1.30E-54 1.29E+11 51649870 50701590 32446220 18244025 52264610 52573140 62997990 61615650 36707520 58341500 TRUE FALSE FALSE 48029480.83 46683811.36 45010265.32 42473012.2 45709095.27 46087200.51 47235226.58 47587111.56 39889357.39 43732408.66 1.098258301 1.067487769 1.029219901 0.971202216 1.045199582 1.053845464 1.080096615 1.088142936 0.912123494 1 25.38219947 -1 0.115587211 0.984749365 1.244589531 0.158706108 0.050903167 251.6410254 2.017530642 0.421018861 10.48155259 0.1 1 0.259840166 YFEADPPGQVAAS(ph)PDPTT ddPTM_HeLa_A485_30min_R1 2 YFEADPPGQVAASPDPTT 18 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 YFEADPPGQVAAS(0.999)PDPTT;YFEADPPGQVAAS(1)PDPTT ; 186.94 6.36E-18 204024000 139690 210570 226680 139340 207050 165650 193370 204090 166620 204710 TRUE FALSE FALSE 170763.5586 235194.3298 310538.3649 146951.7914 186435.375 174323.1779 152054.9198 154036.6075 200059.1057 153679.5644 1.111166336 1.530420331 2.020687436 0.956222071 1.213143567 1.134328943 0.989428363 1.002323296 1.30179381 1 17.22956581 -5.293458851 24.99994602 1.088789319 1.55172454 0.470036967 0.228076124 560.1230744 437327.8897 0.064676015 0.095938665 5.09E-06 5.293458851 0.462935221 YFEADPPGQVAAS(ph)PDPTT ddPTM_HeLa_A486_30min_R1 2 YFEADPPGQVAASPDPTT 18 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 YFEADPPGQVAAS(0.999)PDPTT;YFEADPPGQVAAS(1)PDPTT ; 147.09 4.33E-08 238730000 418050 527160 423050 131115 574470 441280 491050 494620 440970 535080 TRUE FALSE FALSE 388746.8538 485385.9217 586866.2897 305242.3462 502414.6159 386839.3602 368184.0962 382005.8235 479193.6347 401092.4852 0.969219988 1.210159601 1.463169497 0.761027338 1.25261538 0.964464243 0.917953115 0.952413315 1.194721049 1 18.61357541 -5.261672415 24.99999996 1.009042898 1.213780669 0.237892746 0.170559908 30.92825585 3318152.157 0.046490109 0.074025827 5.47E-06 5.261672415 0.204737771 YFEGEFTGLPPALT(ph)PPAPHSLLTAR ddPTM_HeLa_A485_30min_R1 1 YFEGEFTGLPPALTPPAPHSLLTAR 25 0 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 YFEGEFTGLPPALT(1)PPAPHSLLTAR 111.03 0.00041345 854910000 71919 109270 99159 65886 108220 92288 112800 136290 82702 101800 TRUE FALSE FALSE 87917.13343 122048.176 135842.0405 69485.18535 97445.23682 97120.05698 88699.35851 102864.6638 99299.53281 76423.13349 1.150399485 1.59700565 1.777498962 0.909216649 1.275075129 1.270820137 1.160634934 1.345988565 1.299338672 1 16.22172179 -5.257911415 24.99967562 1.201489213 1.517171775 0.37134035 0.194173164 344.0035425 2437651.363 0.053195203 0.087617046 5.52E-06 5.257911415 0.315682563 YFEGEFTGLPPALT(ph)PPAPHSLLTAR ddPTM_HeLa_A486_30min_R1 1 YFEGEFTGLPPALTPPAPHSLLTAR 25 0 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 YFEGEFTGLPPALT(1)PPAPHSLLTAR 105.21 0.00061064 550040000 282170 371660 302710 98222 412790 306090 365320 353620 324550 353810 TRUE FALSE FALSE 262391.3401 342208.308 419927.4189 228665.7799 361014.0291 268327.7279 273913.072 273108.4455 352682.2553 265213.6731 0.989358268 1.29031171 1.583355089 0.862194536 1.361219521 1.011741683 1.032801472 1.029767592 1.329804196 1 18.01679563 -5.272923846 24.99011271 1.096588238 1.287938714 0.177188941 0.195153427 1276.669931 2778021.896 0.053927534 0.080738352 5.33E-06 5.272923846 0.191350476 YFHVVIAGPQDSPFEGGTFK ddPTM_HeLa_A485_30min_R1 2 YFHVVIAGPQDSPFEGGTFK 20 0 F8VZ29;F8VSD4;F8VV71;P61088 F8VZ29 UBE2N Ubiquitin-conjugating enzyme E2 N 0 0 ; ; 301.7 5.53E-73 72000000 43451 45257 39053 56625 56061 56922 81989 85525 40018 84666 FALSE FALSE TRUE 53116.52505 50549.41247 53500.32983 59718.28037 50479.37 59902.3479 64471.38036 64549.85965 48049.24553 63560.32436 0.835686815 0.795298214 0.841725249 0.939552794 0.79419623 0.942448745 1.014333722 1.015568443 0.755962875 1 15.95583887 -6.340231047 7.442315637 0.951551346 0.844349582 0.301129978 0.079222422 0.37086077 30.97514241 0.027974603 0.024645785 4.57E-07 6.340231047 -0.107201764 YFHVVIAGPQDSPFEGGTFK ddPTM_HeLa_A486_30min_R1 1 YFHVVIAGPQDSPFEGGTFK 20 0 F8VZ29;F8VSD4;F8VV71;P61088 F8VZ29 UBE2N Ubiquitin-conjugating enzyme E2 N 0 0 184.32 8.10E-19 35399000 7361.8 10491 8136.1 3590.5 11806 11934 15392 12198 10801 14877 FALSE FALSE TRUE 6845.775836 9659.654952 11286.61581 8358.865454 10325.18139 10461.70442 11540.7588 9420.78168 11737.23938 11151.70237 0.613877201 0.866204516 1.012098013 0.74955959 0.925883874 0.938126223 1.034887627 0.844784175 1.052506513 1 13.44497634 -4.29553369 3.248544966 0.934969916 0.580350669 0.558942258 0.087776728 0.216982454 3.765474688 0.021695183 0.184682299 5.06E-05 4.29553369 -0.354619247 YFLVGAGAIGCELLK ddPTM_HeLa_A486_30min_R1 1 YFLVGAGAIGCELLK 15 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 212.89 7.51E-22 12569000 11734 14223 10125 6288.7 16091 16742 17863 16214 13020 18196 FALSE FALSE TRUE 10911.50719 13095.91768 14045.67116 14640.41141 14072.71674 14676.54226 13393.48846 12522.42615 14148.58408 13639.60316 0.799987145 0.960139201 1.029771247 1.073375174 1.031754118 1.07602414 0.981955875 0.918093144 1.037316402 1 13.73551405 -4.301432919 2.556139113 1.018491335 0.76434746 0.696579345 0.043456882 0.269439127 2.406824787 0.012448366 0.142132187 5.00E-05 4.301432919 -0.254143875 YFLWPLQHGTLHFCGFK ddPTM_HeLa_A485_30min_R1 2 YFLWPLQHGTLHFCGFK 17 0 Q5TD07;P16083 Q5TD07 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] 0 0 ; ; 276.22 5.48E-55 325900000 360980 444260 411280 212195 505720 422290 740700 760470 232535 352780 FALSE FALSE TRUE 441278.7556 496212.3425 563429.5868 223786.6755 455368.7411 444400.4514 582443.394 573963.5401 279202.6416 264838.4384 1.666218689 1.873641702 2.127446416 0.844993185 1.719420881 1.678005859 2.199240403 2.167221433 1.054237607 1 18.014753 YFLWPLQHGTLHFCGFK ddPTM_HeLa_A486_30min_R1 2 YFLWPLQHGTLHFCGFK 17 0 Q5TD07;P16083 Q5TD07 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] 0 0 ; ; 285.43 2.24E-56 242700000 149304 193787 175427 44205 234840 203500 270460 215160 231060 212740 FALSE FALSE TRUE 138838.5606 178430.6124 243357.0325 102911.474 205384.1774 178394.239 202788.0474 166172.7649 251088.4668 159468.5193 0.870633033 1.118908065 1.526050618 0.645340375 1.287929294 1.118679974 1.271649403 1.042041186 1.57453313 1 17.28291212 YFLWVVK ddPTM_HeLa_A485_30min_R1 2 YFLWVVK 7 0 P62993-2;P62993 P62993-2 GRB2 Growth factor receptor-bound protein 2 0 0 ; ; 161.68 0.0018615 32463000 85582 86645 82238 92163 121413 99740 132726 127208 71787 126866 FALSE FALSE TRUE 104619.4206 96777.37904 112661.2584 97197.63132 109324.6954 104962.2322 104368.0058 96010.03855 86193.99243 95240.641 1.098474554 1.016135318 1.182911594 1.020547849 1.147878619 1.102073979 1.095834769 1.008078458 0.905012729 1 16.53928971 -7.420378176 3.371276091 0.952407465 1.09468853 0.55514628 0.052138776 0.174046836 3.647042817 0.03232949 0.013209193 3.80E-08 7.420378176 0.142281065 YFLWVVK ddPTM_HeLa_A486_30min_R1 2 YFLWVVK 7 0 P62993-2;P62993 P62993-2 GRB2 Growth factor receptor-bound protein 2 0 0 ; ; 142.42 0.0036498 34375000 31929 42047 33372 17267.4 50181 44375 49831 45699 39626 53027 FALSE FALSE TRUE 29690.94198 38715.04259 46294.53213 40199.37985 43886.83106 38900.46367 37362.75674 35294.3353 43060.81359 39748.69405 0.746966478 0.973995335 1.164680582 1.01133838 1.104107496 0.97866017 0.939974448 0.887936979 1.083326499 1 15.27861984 -4.287359357 4.224254956 1.018206247 0.731566169 0.532520678 0.076491737 0.15932097 6.267794821 0.020302147 0.130300506 5.16E-05 4.287359357 -0.286640079 YFPSSCLDLNSPTS(ph)PTPTR ddPTM_HeLa_A485_30min_R1 1 YFPSSCLDLNSPTSPTPTR 19 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 YFPSSCLDLNSPT(0.154)S(0.843)PT(0.001)PT(0.001)R 106.94 2.41E-05 0 36142 47906 55893 34282 58480 51856 58782 59766 51012 52204 TRUE FALSE FALSE 44181.66321 53508.18997 76570.1466 36154.73885 52657.52586 54571.09998 46222.7455 45108.29479 61249.64049 39190.50354 1.127356355 1.365335608 1.953793386 0.922538258 1.343629734 1.392457229 1.179437397 1.151000643 1.562869444 1 15.25821649 -5.293079181 24.99994281 1.238430198 1.470479834 0.172891727 0.258881081 1260.329432 995836.8501 0.072331503 0.107294924 5.09E-06 5.293079181 0.232049636 YFPTQALNFAFK ddPTM_HeLa_A485_30min_R1 2 YFPTQALNFAFK 12 0 P05141;V9GYG0;P12235;Q9H0C2;P12236 P05141;P12236 SLC25A5;SLC25A4;SLC25A31;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 ; ; 237.93 8.05E-29 88276000 124785 124203 72689 127765 74592 121295 140938 131055 85320 288840 FALSE FALSE TRUE 152542.9927 138727.4604 99579.68594 134744.4784 67165.35857 127645.8186 110825.4449 98913.55576 102442.9414 216837.5037 0.703489895 0.639776137 0.459236452 0.621407626 0.309749732 0.588670394 0.511099063 0.456164428 0.472441066 1 17.72625478 -10.29876591 5.58164624 1.000057817 0.525653183 0.630898112 0.108022011 7.80E-05 9.80E-06 0.10501313 0.025466335 5.03E-11 10.29876591 -0.474404634 YFPTQALNFAFK ddPTM_HeLa_A486_30min_R1 2 YFPTQALNFAFK 12 0 P05141;V9GYG0;P12235;Q9H0C2;P12236 P05141;P12236 SLC25A5;SLC25A4;SLC25A31;SLC25A6 "ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed" 0 0 ; ; 241.03 5.75E-29 61811000 80249 92485 78464 33264 118445 100466 103784 94214 142852 147283 FALSE FALSE TRUE 74623.95951 85156.15178 108847.3621 77440.27307 103588.5236 88071.52638 77816.14548 72763.52888 155234.5264 110402.3781 0.675927102 0.771325339 0.985915013 0.701436639 0.938281633 0.797732149 0.704841207 0.659075738 1.406079552 1 16.75241172 -7.755080796 24.99999973 1.203039813 0.7867712 0.604048511 0.137116752 87.63196997 344552.2451 0.09414086 0.033652994 1.76E-08 7.755080796 -0.416268613 YFQINQDEEEEEDED ddPTM_HeLa_A485_30min_R1 1 YFQINQDEEEEEDED 15 0 K7ERI7;P35268 K7ERI7 RPL22 60S ribosomal protein L22 0 0 164.81 2.48E-10 64829000 74546 82298 88165 84679 103680 72278 99671 109040 86115 94200 FALSE FALSE TRUE 91128.50052 91922.0352 120780.9024 89304.79935 93357.25516 76062.36432 78375.47661 82297.76903 103397.4906 70717.67362 1.288624128 1.299845293 1.707930934 1.26283565 1.320140361 1.075577864 1.108286975 1.16375108 1.462116686 1 16.1097832 -5.812580233 2.270886319 1.173334429 1.417632265 0.306476476 0.162471919 0.381252506 4.030966656 0.055485145 0.068571496 1.54E-06 5.812580233 0.244297836 YFQINQDEEEEEDED ddPTM_HeLa_A486_30min_R1 4 YFQINQDEEEEEDED 15 0 K7ERI7;P35268 K7ERI7 RPL22 60S ribosomal protein L22 0 0 ;;; ;;; 255.31 3.33E-42 309888000 570100 692190 631550 228052 810490 587030 728240 666350 607910 656390 FALSE FALSE TRUE 530138.934 637338.3435 876103.0735 530916.5811 708830.7867 514608.2071 546026.6495 514636.6513 660604.1283 492025.6716 1.077461939 1.295335549 1.780604395 1.07904244 1.440637811 1.045897068 1.109752358 1.045954878 1.342621262 1 18.90837407 -6.266250388 24.94516695 1.111773992 1.343012712 0.233100993 0.20443769 609.1784646 3158591.058 0.070558165 0.064254608 5.42E-07 6.266250388 0.23123872 YFQS(ph)PS(ph)R ddPTM_HeLa_A486_30min_R1 1 YFQSPSR 7 0 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 2 0 YFQS(1)PS(1)R 73.655 0.037623 1014300000 745650 729600 402840 135390 426480 484700 460120 437280 530780 756860 TRUE FALSE FALSE 693383.7855 671783.8388 558830.4364 315194.7622 372986.9016 424902.6421 344993.1093 337720.8898 576788.4378 567337.3297 1.222171976 1.184099483 0.985005582 0.555568523 0.657434091 0.748941802 0.608091679 0.595273521 1.01665871 1 19.11384727 -4.996681419 3.487332031 0.715422319 1.197296366 0.597459563 0.152203032 0.141232654 3.666357903 0.04053965 0.086648661 1.01E-05 4.996681419 0.481874047 YFQS(ph)PS(ph)RS(ph)R ddPTM_HeLa_A486_30min_R1 1 YFQSPSRSR 9 1 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 3 0 YFQS(1)PS(1)RS(1)R 93.649 0.028505 617560000 332430 356190 224670 80523 242970 258070 256800 250240 279800 356740 TRUE FALSE FALSE 309128.3737 327964.2072 311668.2409 187461.6134 212494.437 226231.9473 192545.9238 193265.8147 304053.2893 267409.982 1.156009104 1.226447138 1.165507131 0.701026985 0.794639136 0.846011602 0.720040151 0.722732238 1.137030439 1 18.02869379 -5.241857278 19.30485779 0.826994538 1.187035547 0.582795605 0.129853286 28.59441462 28187.6952 0.034444128 0.059363795 5.73E-06 5.241857278 0.360041009 YFQS(ph)PSR ddPTM_HeLa_A485_30min_R1 4 YFQSPSR 7 0 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 0 YFQS(0.93)PS(0.07)R;YFQS(1)PSR;YFQS(0.927)PS(0.073)R;YFQS(0.649)PS(0.351)R ;;; 137.05 0.0015711 4327740000 2976900 4497270 4209280 2790390 3930260 3614820 3768120 3933360 3221730 3594170 TRUE FALSE FALSE 3639101.135 5023186.605 5766467.835 2942821.94 3538949.514 3804086.386 2963030.379 2968697.293 3868301.66 2698209.565 1.348709597 1.861674004 2.137146021 1.090657293 1.311591791 1.409855793 1.098146867 1.100247116 1.43365501 1 21.36357097 -5.275434466 24.99821092 1.21884595 1.790426301 0.579688644 0.224631679 539.9190053 964409.3871 0.063407319 0.094573585 5.30E-06 5.275434466 0.571580351 YFQS(ph)PSR ddPTM_HeLa_A486_30min_R1 3 YFQSPSR 7 0 Q16629;Q16629-4;H7BZZ6 Q16629 SRSF7 Serine/arginine-rich splicing factor 7 1 0 YFQS(0.637)PS(0.363)R;YFQS(0.98)PS(0.02)R;YFQS(1)PSR ;; 136.99 0.001572 3378390000 3147350 2976370 2264140 725150 2782780 2321320 2455680 2521320 2311090 2740570 TRUE FALSE FALSE 2926737.018 2740511.601 3140875.644 1688185.847 2433737.784 2034939.14 1841242.89 1947270.476 2511417.142 2054313.434 1.424678907 1.33402798 1.528917444 0.82177618 1.184696426 0.990568969 0.896281385 0.947893561 1.222509234 1 20.97022488 -5.254782952 24.99849221 1.008775732 1.419690112 0.714944879 0.121516508 280.6636262 1054041.208 0.032403089 0.054528448 5.56E-06 5.254782952 0.41091438 YFS(ph)PGESR ddPTM_HeLa_A486_30min_R1 1 YFSPGESR 8 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 Y(0.001)FS(0.98)PGES(0.019)R 66.321 0.021045 92305000 76875 116600 99898 45669 136180 121780 125650 146570 101770 104710 TRUE FALSE FALSE 71486.45948 107360.1914 138581.181 106319.74 119099.0346 106756.0218 94211.04101 113199.2106 110591.5055 78489.93445 0.910772317 1.367821137 1.765591753 1.354565279 1.517379718 1.360123722 1.200294556 1.442213086 1.408989653 1 16.26022003 -6.528690163 24.40026341 1.296937365 1.405693616 0.047176534 0.228510035 441.2705507 1852719.254 0.088635784 0.068878703 2.96E-07 6.528690163 0.10875625 YFS(ph)SLR ddPTM_HeLa_A485_30min_R1 1 YFSSLR 6 0 P17024 P17024 ZNF20 Zinc finger protein 20 1 0 YFS(0.5)S(0.5)LR 68.485 0.029684 3745500000 59400 0 39890 72889 40794 79714 53583 116880 55522 86521 TRUE FALSE FALSE 72613.32507 0 54646.97096 76870.74151 36732.40612 83887.70178 42134.55432 88214.99674 66664.75612 64952.907 1.117938033 0 0.841332182 1.183484236 0.565523667 1.29151574 0.648693896 1.358137777 1.026355235 1 15.98710648 -4.988436739 24.99924985 1.004223852 0.52439317 0.211767077 0.34446723 286.2278079 618802.3703 0.083153864 0.172884866 1.03E-05 4.988436739 -0.479830682 YFYTAMSRPGR ddPTM_HeLa_A485_30min_R1 1 YFYTAMSRPGR 11 1 A0A140TA14;A0A140TA13;A0A140TA11;A0A140T9Y5;A0A140T997;A0A140T953;Q2L6G2;D9J307;D5H3J5 A0A140TA14 HLA-B 0 0 113.69 0.01316 26166000 26540 30206 25301 29221 34119 33196 46274 45793 28613 49267 FALSE FALSE TRUE 32443.73144 33738.32894 34660.89276 30817.26924 30721.99256 34934.09123 36387.18188 34562.19495 34355.36665 36985.64359 0.877197969 0.912200672 0.937144508 0.833222468 0.830646423 0.944531116 0.983819081 0.934475964 0.92888384 1 15.17467776 -6.423612403 7.275993376 0.957416008 0.880952645 0.558598741 0.035797923 0.237904999 15.25724076 0.013660426 0.012005496 3.77E-07 6.423612403 -0.076463363 YGASSLNGCSPS(ph)PVHTMEQKPLQSLSSK ddPTM_HeLa_A486_30min_R1 1 YGASSLNGCSPSPVHTMEQKPLQSLSSK 28 1 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 YGASSLNGCS(0.005)PS(0.995)PVHTMEQKPLQSLSSK 258.83 2.47E-63 367550000 369340 368930 191070 85175 362810 380020 479780 429140 339750 462130 TRUE FALSE FALSE 343451.1733 339694.6432 265057.421 198291.7045 317302.9867 333136.9962 359733.9694 331434.1901 369199.8036 346409.64 0.991459629 0.980615445 0.765156019 0.572419707 0.915976203 0.96168512 1.038464084 0.956769535 1.065789634 1 18.40211955 -6.164487749 3.535722172 1.005361451 0.826852999 0.339715687 0.114377501 0.317905195 7.445696134 0.043732454 0.043436189 6.85E-07 6.164487749 -0.178508452 YGDGGSTFQSTTGHCVHMR ddPTM_HeLa_A485_30min_R1 1 YGDGGSTFQSTTGHCVHMR 19 0 G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;D6RIT2 G8JLB6 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 65.949 0.0086643 6897000 2089.8 1949.1 2873.9 3180.2 4600.2 3569.1 5498 4224.9 3100.1 6015 FALSE FALSE TRUE 2554.6688 2177.03029 3937.075203 3353.926273 4142.187936 3755.972557 4323.307385 3188.736651 3722.261634 4515.571198 0.565746544 0.482116258 0.871888634 0.742746848 0.917312064 0.83178238 0.957422039 0.706164627 0.824316896 1 12.14069278 -4.76324065 24.99999666 0.846797468 0.523931327 0.698218718 0.087259785 22.83749077 316984.4269 0.021723556 0.049304477 1.72E-05 4.76324065 -0.322866141 YGDGGSTFQSTTGHCVHMR ddPTM_HeLa_A486_30min_R1 1 YGDGGSTFQSTTGHCVHMR 19 0 G8JLB6;P31943;E9PCY7;H0YB39;H0YBG7;H0YBD7;D6RIT2 G8JLB6 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 119.23 1.03E-06 8670000 2299 3367.7 3369 1631.5 6110.8 3442.3 4945.7 4551.6 3327.7 3296.5 FALSE FALSE TRUE 2137.851972 3100.831187 4673.567025 3798.214451 5344.326483 3017.624025 3708.23355 3515.300041 3616.147715 2471.034943 0.865164606 1.254871444 1.891339917 1.537094593 2.162788712 1.221198443 1.500680336 1.422602319 1.463414237 1 11.2708997 -8.79018622 0.833952858 0.993463704 1.514247174 0.151609675 0.337877399 6.920746907 5.778801344 0.467804865 0.116840403 1.62E-09 8.79018622 0.52078347 YGDSEFTVQSTTGHCVHMR ddPTM_HeLa_A485_30min_R1 2 YGDSEFTVQSTTGHCVHMR 19 0 P52597 P52597 HNRNPF "Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 0 ; ; 128.69 4.35E-07 19085100 19767.6 25706 35204 20377.2 52006 22521.5 36400 33700 34056 36175 FALSE FALSE TRUE 24164.83442 28712.09309 48227.42456 21490.35484 46828.10004 23700.69092 28622.84264 25435.02216 40890.72682 27157.23825 0.889811924 1.057253791 1.775858948 0.791330644 1.724332187 0.872720955 1.053967358 0.936583533 1.505702695 1 14.72904915 YGGDEIPFS(ph)PYR ddPTM_HeLa_A485_30min_R1 6 YGGDEIPFSPYR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR ;;;;; 187.77 4.57E-13 2130162000 2155194 2305580 2215612 2209571 3022096 2159176 2895930 2633522 2266168 3067461 TRUE FALSE FALSE 2634609.47 2575197.525 3035259.078 2330274.269 2721205.511 2272227.117 2277190.898 1987646.6 2720967.131 2302799.425 1.144089859 1.118289981 1.318073578 1.011931062 1.181694542 0.986723851 0.988879393 0.863143606 1.181591024 1 21.13495733 -6.265924306 24.35245856 0.994564779 1.15391843 0.356745259 0.10080601 287.2120563 1559512.623 0.033703683 0.030733391 5.42E-07 6.265924306 0.159353651 YGGDEIPFS(ph)PYR ddPTM_HeLa_A486_30min_R1 4 YGGDEIPFSPYR 12 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR ;;; 192.4 2.26E-13 2141250000 1958550 2330040 1837130 761850 2484450 2090590 2466360 2538380 1790420 2166500 TRUE FALSE FALSE 1821265.759 2145399.145 2548515.936 1773625.302 2172827.114 1832674.261 1849250.642 1960446.286 1945615.047 1623994.298 1.121473001 1.321063225 1.569288721 1.092137641 1.337952428 1.128497965 1.138705132 1.207175597 1.198043028 1 20.63111514 -6.050205569 1.361284739 1.145791877 1.312694233 0.220553705 0.135478344 0.684293211 2.60445917 0.0584892 0.063093157 8.91E-07 6.050205569 0.166902356 YGGDS(ph)DHPS(ph)DGETSVQPMMTK ddPTM_HeLa_A485_30min_R1 3 YGGDSDHPSDGETSVQPMMTK 21 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 2 0 YGGDS(1)DHPS(1)DGETSVQPMMTK;Y(0.006)GGDS(0.995)DHPS(0.999)DGETSVQPMMTK;Y(0.013)GGDS(0.989)DHPS(0.998)DGETSVQPMMTK ;; 184.29 3.27E-19 661870000 400130 366270 276172 600880 526200 372800 578070 515120 354380 784030 TRUE FALSE FALSE 489137.5381 409102.0904 378339.5153 633704.5529 473809.6804 392319.2315 454560.6221 388786.0123 425500.8154 588585.75 0.831038703 0.695059455 0.642794215 1.076656295 0.80499686 0.666545582 0.772292945 0.660542686 0.722920688 1 19.16689309 -6.045058118 24.75716853 0.742849074 0.809759582 0.014807203 0.138819111 1422.045164 781338.8334 0.04612662 0.046128954 9.01E-07 6.045058118 0.066910508 YGGDS(ph)DHPS(ph)DGETSVQPMMTK ddPTM_HeLa_A486_30min_R1 4 YGGDSDHPSDGETSVQPMMTK 21 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 2 0 Y(0.007)GGDS(0.993)DHPS(1)DGETSVQPMMTK;YGGDS(1)DHPS(1)DGETSVQPMMTK;YGGDS(1)DHPS(1)DGETSVQPMMTK;YGGDS(1)DHPS(1)DGETSVQPMMTK ;;; 172.52 6.42E-14 934670000 1295890 1362300 755240 584690 1352150 1548410 1832610 1689000 1136390 1858210 TRUE FALSE FALSE 1205054.803 1254346.387 1047689.154 1361187.869 1182550.739 1357382.917 1374071.595 1304451.571 1234893.2 1392902.121 0.865139614 0.9005273 0.752162796 0.977231528 0.848983371 0.974499857 0.986481084 0.936499091 0.886561361 1 20.40966245 -5.76370728 1.372227955 0.95096605 0.852843518 0.324414605 0.060701344 0.514520219 2.02627579 0.023015709 0.032218492 1.72E-06 5.76370728 -0.098122532 YGGPNHIVGS(ph)PFK ddPTM_HeLa_A485_30min_R1 4 YGGPNHIVGSPFK 13 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 YGGPNHIVGS(1)PFK;YGGPNHIVGS(1)PFK;YGGPNHIVGS(1)PFK;YGGPNHIVGS(1)PFK ;;; 141.86 8.32E-08 1699070000 1797650 1689060 1141570 2263720 2282950 1807120 2917720 2785900 1505370 3234970 TRUE FALSE FALSE 2197531.041 1886580.874 1563884.248 2387381.292 2055651.482 1901738.009 2294325.286 2102653.657 1807483.951 2428551.514 0.904873143 0.776833789 0.643957618 0.983047416 0.846451669 0.783075013 0.944729924 0.865805664 0.7442642 1 21.21166466 -14 0.322140416 2.578894576 0.826379662 0.207103807 0.09586679 550.407824 4.866811588 593.6126587 0.086482047 1.00E-14 14 -1.752514913 YGGPNHIVGS(ph)PFK ddPTM_HeLa_A486_30min_R1 3 YGGPNHIVGSPFK 13 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 YGGPNHIVGS(1)PFK;YGGPNHIVGS(1)PFK;YGGPNHIVGS(1)PFK ;; 105.53 0.00030994 1735030000 2334290 2291270 1266830 1343609 2255510 2569550 3318420 3214620 1710640 3242870 TRUE FALSE FALSE 2170668.325 2109701.421 1757380.503 3127989.654 1972602.904 2252545.046 2488116.217 2482721.201 1858919.653 2430834.244 0.892972579 0.867891929 0.722953655 1.28679677 0.811492149 0.92665514 1.023564738 1.021345329 0.764724973 1 21.21302009 YGGPYHIGGS(ph)PFK ddPTM_HeLa_A485_30min_R1 2 YGGPYHIGGSPFK 13 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 YGGPYHIGGS(1)PFK;YGGPYHIGGS(1)PFK ; 139.6 2.59E-06 1238290000 2128100 1899630 1458250 2706200 2883900 2178500 3285700 3496700 1847340 3820900 TRUE FALSE FALSE 2601488.503 2121775.204 1997717.358 2854032.854 2596768.79 2292562.891 2583683.353 2639128.842 2218084.193 2868419.948 0.906941295 0.739701732 0.696452191 0.994984314 0.90529589 0.799242417 0.900733993 0.92006362 0.773277356 1 21.45182483 -14 0.120635797 1.457096357 0.780775456 0.189620522 0.089858935 264.8678912 2.064819061 30.02559902 0.887014415 1.00E-14 14 -0.676320901 YGGPYHIGGS(ph)PFK ddPTM_HeLa_A486_30min_R1 1 YGGPYHIGGSPFK 13 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 YGGPYHIGGS(1)PFK 122.93 2.56E-05 847680000 918940 888920 473420 475540 922260 1027400 1295100 1148500 660660 1296300 TRUE FALSE FALSE 854527.0514 818478.7418 656740.9026 1107081.152 806581.5511 900649.8338 971052.2818 887011.6216 717926.5407 971698.0425 0.879416253 0.84231799 0.675869328 1.139326317 0.830074278 0.926882421 0.999335431 0.912846978 0.738837076 1 19.89014854 -5.23446441 24.99956487 0.929627005 0.803512913 0.237617327 0.111331106 1185.072559 1098287.17 0.029628681 0.051301921 5.83E-06 5.23446441 -0.126114092 YGGPYHIGGSPFK ddPTM_HeLa_A485_30min_R1 4 YGGPYHIGGSPFK 13 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ;;; ;;; 129.84 0.00011573 542939000 1023214 1260111 1104421 1044919 1505580 1274097 1664070 1747680 1188736 1621782 FALSE FALSE TRUE 1250824.424 1407470.02 1512992.287 1102000.279 1355679.169 1340806.749 1308527.85 1319058.74 1427304.411 1217501.594 1.027369845 1.156031357 1.24270251 0.905132514 1.113492726 1.101277202 1.074764794 1.083414384 1.172322417 1 20.21549223 -11.50219241 2.015414936 3.02E-05 1.097245259 0.104669074 0.085449981 1878408.49 148406.1227 8620535.62 0.022201834 3.15E-12 11.50219241 1.097215105 YGGPYHIGGSPFK ddPTM_HeLa_A486_30min_R1 1 YGGPYHIGGSPFK 13 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 91.961 0.026144 0 36286 39186 24163 5431.4 40767 34022 37890 38313 31595 37347 FALSE FALSE TRUE 33742.53878 36080.75865 33519.56071 12644.57369 35653.62272 29824.71155 28409.52124 29589.96627 34333.68004 27995.06811 1.205302971 1.288825535 1.197338066 0.451671474 1.273567993 1.06535592 1.014804505 1.056970683 1.226418879 1 14.77288507 -5.023161894 24.99243242 1.012541441 1.246068864 0.188182403 0.209014178 1186.749211 1280542.103 0.056458597 0.098666367 9.48E-06 5.023161894 0.233527422 YGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR ddPTM_HeLa_A485_30min_R1 4 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 0 YGGSVGSQPPPVAPEPGPVPS(0.15)S(0.761)PS(0.089)QEPPT(0.001)KR;YGGSVGSQPPPVAPEPGPVPS(0.094)S(0.737)PS(0.152)QEPPT(0.017)KR;YGGSVGSQPPPVAPEPGPVPS(0.022)S(0.87)PS(0.107)QEPPT(0.001)KR;YGGSVGSQPPPVAPEPGPVPS(0.076)S(0.8)PS(0.123)QEPPT(0.001)KR ;;; 279.78 7.87E-78 7236300000 1544670 1747290 1427990 1773260 2155840 1849690 2525350 2758520 1609060 2384690 TRUE FALSE FALSE 1888276.512 1951620.366 1956262.925 1870128.704 1941197 1946536.908 1985788.342 2081988.645 1931983.583 1790230.67 1.054767156 1.090150224 1.092743498 1.044630022 1.084327865 1.087310669 1.109236019 1.16297228 1.079181368 1 20.77171406 -6.3529106 2.693710334 1.1008261 1.073318892 0 0.040649372 0.75070813 10.63625838 0.015260224 0.013332062 4.44E-07 6.3529106 -0.027507208 YGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR ddPTM_HeLa_A486_30min_R1 7 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2;E9PS08 A0A087WTZ5 UBXN1 UBX domain-containing protein 1 1 0 YGGSVGSQPPPVAPEPGPVPS(0.09)S(0.795)PS(0.09)QEPPT(0.024)KR;YGGSVGSQPPPVAPEPGPVPS(0.101)S(0.751)PS(0.143)QEPPT(0.005)KR;YGGSVGSQPPPVAPEPGPVPS(0.07)S(0.759)PS(0.164)QEPPT(0.007)KR;YGGSVGSQPPPVAPEPGPVPS(0.016)S(0.946)PS(0.036)QEPPT(0.002)KR;YGGSVGSQPPPVAPEPGPVPS(0.348)S(0.434)PS(0.109)QEPPT(0.109)KR;YGGSVGSQPPPVAPEPGPVPS(0.136)S(0.772)PS(0.092)QEPPTKR;YGGSVGSQPPPVAPEPGPVPS(0.28)S(0.624)PS(0.094)QEPPT(0.002)KR ;;;;;; 222.52 3.84E-39 7191320000 1837190 1729200 1113423 635185 1804400 1753350 2059330 2008250 1427185 2182680 TRUE FALSE FALSE 1708412.468 1592171.894 1544570.204 1478742.78 1578075.327 1537039.504 1544063.853 1551015.315 1550894.545 1636122.721 1.044183573 0.973137207 0.944043001 0.903809208 0.964521369 0.939440229 0.943733519 0.94798226 0.947908445 1 20.64184953 -4.306458369 2.468402379 0.945660021 1.060664695 0.612485385 0.022670013 0.281636293 2.305348612 0.00562138 0.065499446 4.94E-05 4.306458369 0.115004674 YGIICMEDLIHEIYTVGKR ddPTM_HeLa_A485_30min_R1 2 YGIICMEDLIHEIYTVGKR 19 1 A8MUD9;P18124 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 225.96 8.92E-30 30216900 25783.2 40235 29827.6 18387.6 44063 40900 52160 71096 27044 30700 FALSE FALSE TRUE 31518.58389 44940.13325 40862.07047 19392.06803 39675.93301 43041.46076 41015.58989 53659.59453 32471.48274 23047.05499 1.367575332 1.949929536 1.772984465 0.841411974 1.721518564 1.867547102 1.779645595 2.328262528 1.408921129 1 14.49229479 -5.973815807 24.99948196 1.769450714 1.505096924 0.029631851 0.421077564 609.7148001 582125.4236 0.129321473 0.146632866 1.06E-06 5.973815807 -0.26435379 YGIICMEDLIHEIYTVGKR ddPTM_HeLa_A486_30min_R1 2 YGIICMEDLIHEIYTVGKR 19 1 A8MUD9;P18124 A8MUD9 RPL7 60S ribosomal protein L7 0 0 ; ; 191.99 2.87E-19 19989400 45600 34582 31842 16936.5 54833 33333 50871 49554 28610 49771 FALSE FALSE TRUE 42403.67548 31841.59637 44172.07516 39429.02792 47955.33384 29220.71337 38142.53774 38271.63596 31089.93784 37308.01765 1.136583452 0.853478646 1.183983442 1.056851326 1.285389492 0.783228786 1.022368385 1.025828719 0.833331273 1 15.18719808 -6.270189568 24.92868351 0.940154301 1.091287363 0.309256601 0.126402667 896.2532885 2553356.588 0.043709176 0.039130982 5.37E-07 6.270189568 0.151133062 YGLIFHSTFIGR ddPTM_HeLa_A485_30min_R1 2 YGLIFHSTFIGR 12 0 O00567;H0Y653;H0YDU4;A0A494C128 O00567 NOP56 Nucleolar protein 56 0 0 ; ; 99.752 0.0022255 49051000 55707 54759 78832 95397 129996 48101 74619 67995 74020 145445 FALSE FALSE TRUE 68098.82996 61162.58871 107995.2373 100608.2966 117053.1418 50619.49398 58676.04107 51319.11964 88875.13505 109188.2382 0.623682835 0.5601573 0.989073906 0.921420642 1.072030685 0.463598413 0.537384264 0.470005932 0.813962534 1 16.73645793 -6.276460648 24.9720336 0.616390239 0.831652681 0.135027097 0.210900328 1411.879433 2347164.919 0.076439373 0.067673481 5.29E-07 6.276460648 0.215262442 YGLIFHSTFIGR ddPTM_HeLa_A486_30min_R1 2 YGLIFHSTFIGR 12 0 O00567;H0Y653;H0YDU4;A0A494C128 O00567 NOP56 Nucleolar protein 56 0 0 ; ; 167.6 1.69E-06 32705000 46993 70050 72724 27188 102606 69923 83032 77712 66873 54503 FALSE FALSE TRUE 43699.03337 64498.98288 100884.6804 63295.03801 89736.19872 61296.61118 62256.51538 60018.67404 72669.60548 40855.09405 1.069610397 1.578725601 2.469329291 1.549256941 2.196450671 1.500341943 1.52383728 1.469062193 1.778715903 1 15.31822835 -6.470011292 24.97172296 1.486290945 1.794211278 0.135280985 0.396580609 720.5753332 340360.6943 0.140029881 0.123493794 3.39E-07 6.470011292 0.307920333 YGLIYHASLVGQTS(ph)PK ddPTM_HeLa_A485_30min_R1 1 YGLIYHASLVGQTSPK 16 0 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 YGLIYHASLVGQT(0.014)S(0.986)PK 127.59 1.44E-05 217170000 175800 310030 266580 122730 485910 241960 325790 343050 218460 247360 TRUE FALSE FALSE 214906.1035 346285.3116 365199.0353 129434.4291 437531.0943 254628.6515 256182.305 258916.4496 262302.9182 185697.7043 1.157290039 1.864779712 1.966631934 0.697016851 2.356147029 1.371199781 1.379566355 1.394289986 1.412526445 1 17.50259645 -8.229660704 0.550578542 0.990072838 1.594607776 0.126813639 0.431254469 2.519178448 1.666347585 0.501827828 0.203834061 5.89E-09 8.229660704 0.604534938 YGLQDS(ph)DEEEEEHPSK ddPTM_HeLa_A485_30min_R1 5 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK ;;;; 267.55 2.60E-51 10536290000 3078860 2701628 2833969 3852030 5049280 2665770 4581530 3437200 3340710 6311960 TRUE FALSE FALSE 3763741.785 3017559.894 3882372.064 4062456.645 4546555.954 2805345.595 3602648.688 2594221.311 4011159.854 4738504.535 0.794288949 0.636816926 0.819324332 0.85732885 0.959491738 0.592031848 0.760292337 0.547476802 0.846503327 1 22.17600039 -6.27132473 24.97216925 0.721667646 0.806401254 0.030758773 0.140283817 1933.350261 4883974.292 0.048141199 0.042969683 5.35E-07 6.27132473 0.084733608 YGLQDS(ph)DEEEEEHPSK ddPTM_HeLa_A486_30min_R1 8 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK ;;;;;;; 277.14 1.07E-58 16701940000 5715509 7197010 4620205 1001542 7656820 7728790 9411280 8566410 6441505 6226180 TRUE FALSE FALSE 5314881.334 6626692.717 6409272.109 2331640.391 6696430.239 6775290.47 7056478.202 6616025.446 6999859.84 4667104.002 1.138796421 1.419872519 1.373286755 0.499590408 1.434814873 1.451711911 1.511960779 1.41758689 1.499829409 1 22.15409619 YGMGTS(ph)VER ddPTM_HeLa_A485_30min_R1 5 YGMGTSVER 9 0 P08559-3;P08559;P08559-2;P08559-4 P08559-3 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 1 0 YGMGT(0.053)S(0.947)VER;YGMGT(0.041)S(0.959)VER;YGMGT(0.283)S(0.717)VER;YGMGT(0.031)S(0.969)VER;YGMGT(0.031)S(0.969)VER ;;;; 110.53 0.0013402 4210950000 3978040 4677470 4216900 3917140 5204080 5086940 5949100 6725130 4485690 5719970 TRUE FALSE FALSE 4862941.274 5224459.428 5776906.79 4131123.439 4685943.523 5353284.312 4678026.185 5075781.323 5385926.838 4294086.747 1.132473925 1.21666369 1.345316741 0.962049368 1.091254974 1.246664222 1.089411197 1.182039773 1.25426596 1 22.03391991 -10.89963485 2.430024549 0.904502036 1.16746528 0.198818033 0.101681571 21424637.47 11176427.18 11695092.99 0.02569684 1.26E-11 10.89963485 0.262963245 YGMGTS(ph)VER ddPTM_HeLa_A486_30min_R1 5 YGMGTSVER 9 0 P08559-3;P08559;P08559-2;P08559-4 P08559-3 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 1 0 YGMGT(0.002)S(0.998)VER;YGMGT(0.007)S(0.993)VER;YGMGT(0.002)S(0.998)VER;YGMGT(0.041)S(0.959)VER;YGMGT(0.034)S(0.966)VER ;;;; 137.46 0.0001656 5652710000 7011260 8263210 6509190 2207840 8678580 6767490 8093500 8201150 7270550 7006190 TRUE FALSE FALSE 6519806.88 7608403.146 9029722.69 5139963.098 7590031.572 5932585.891 6068420.696 6333927.175 7900767.128 5251794.421 1.241443659 1.448724481 1.719359511 0.978706074 1.445226329 1.129630259 1.155494715 1.206050098 1.504393831 1 22.32437901 -5.263360603 24.99912931 1.216454396 1.467730732 0.289195014 0.19101556 228.0804039 2967814.829 0.051720456 0.081248808 5.45E-06 5.263360603 0.251276337 YGPADVEDTTGSGAT(ph)DSKDDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_A485_30min_R1 1 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 2 0 YGPADVEDT(0.193)T(0.217)GS(0.217)GAT(0.313)DS(0.06)KDDDDIDLFGS(1)DDEEESEEAKR 176.43 7.01E-15 299820000 3708.1 2799.1 2375 7073.4 3984.7 3784.3 6340.4 4633.5 3308.1 11605 TRUE FALSE FALSE 4532.954052 3126.430396 3253.611332 7459.801931 3587.969277 3982.440096 4985.721744 3497.12686 3972.005326 8712.087074 0.52030633 0.358861243 0.37345946 0.856258881 0.411838087 0.457116654 0.57227639 0.401410917 0.45591892 1 13.08880266 -10.06830647 4.661690734 1.000022071 0.489810655 0.553807226 0.137408885 72131714.75 38947469.66 15986.57169 0.033440683 8.54E-11 10.06830647 -0.510211416 YGPADVEDTTGSGATDS(ph)KDDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_A486_30min_R1 1 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 2 0 YGPADVEDT(0.001)T(0.001)GS(0.001)GAT(0.005)DS(0.992)KDDDDIDLFGS(0.991)DDEEES(0.009)EEAKR 238.91 8.13E-52 1079600000 136140 125930 41934 206980 109090 204630 309100 246300 95431 457020 TRUE FALSE FALSE 126597.289 115950.8482 58171.96783 481859.9002 95406.91498 179384.8311 231759.9107 190222.8667 103703.0359 342579.2173 0.369541649 0.338464339 0.169805887 1.406564893 0.278495922 0.523630221 0.6765148 0.555266803 0.302712572 1 18.38607811 -11.15784552 2.309086802 2.102328435 0.523874536 0.162119498 0.331075575 51254891.52 12354118.79 295434522.9 0.082782794 6.95E-12 11.15784552 -1.578453899 YGPADVEDTTGSGATDSKDDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_A485_30min_R1 13 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR ;;;;;;;;;;;; 335.13 3.83E-130 1.76E+11 10571650 5987135.8 3784661.2 24164930 10167933 9527478 20075762 16295978 6454763 31059487 TRUE FALSE FALSE 12923277.07 6687279.251 5184764.871 25484998.94 9155577.889 10026322.02 15786411.44 12299363.84 7750174.728 23316928.5 0.554244401 0.286799321 0.222360543 1.092982677 0.392657973 0.430001834 0.677036491 0.52748645 0.332384033 1 24.47487442 -11.23073703 2.290387527 2.670968239 0.505211365 0.287350628 0.235329955 32611251.48 5919505.177 282127727 0.061107623 5.88E-12 11.23073703 -2.165756874 YGPADVEDTTGSGATDSKDDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_A486_30min_R1 20 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(0.999)DDEEES(0.001)EEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(0.999)DDEEES(0.001)EEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(1)DDEEESEEAKR ;;;;;;;;;;;;;;;;;;; 350.87 2.97E-150 3.12E+11 10107469 9063204 3077289.3 11336987.5 6996561 13935769 21644198 17141053 6648508.9 25992798 TRUE FALSE FALSE 9398987.618 8345002.707 4268898.13 26393079.84 6118987.079 12216515.51 16228590.73 13238409.42 7224807.005 19484032.2 0.482394379 0.428299575 0.219097263 1.354600504 0.314051374 0.627001402 0.832917466 0.679449166 0.370806563 1 24.21578894 -14 0.053887304 2.226331991 4.28E-15 0.124907977 0.310805487 1129.018348 4.469093433 202.127004 40.22970793 1.00E-14 14 -2.226331991 YGPLS(ph)EPGSAR ddPTM_HeLa_A485_30min_R1 1 YGPLSEPGSAR 11 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 0 YGPLS(0.999)EPGS(0.001)AR 137.4 9.53E-05 0 315990 364010 370290 392470 466390 361360 479140 469000 359150 480150 TRUE FALSE FALSE 386280.8853 406577.803 507275.6801 413909.6423 419954.574 380280.2508 376767.8248 353977.0146 431228.1107 360457.4415 1.071640757 1.127949534 1.407310882 1.148289908 1.165060075 1.054993481 1.045249123 0.982021659 1.196335714 1 18.45946941 -6.139778119 2.428613703 1.052248484 1.198951847 0.300738556 0.097826368 0.380390903 4.392243783 0.036832631 0.036827996 7.25E-07 6.139778119 0.146703363 YGPLS(ph)EPGSAR ddPTM_HeLa_A486_30min_R1 1 YGPLSEPGSAR 11 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 0 YGPLS(1)EPGSAR 132.69 0.00014084 0 203590 225440 176230 74942 265910 247370 259300 277460 218430 280310 TRUE FALSE FALSE 189319.3923 207575.3134 244470.9756 174468.7634 232557.0883 216852.0045 194420.3974 214288.4149 237363.6883 210118.5515 0.901012267 0.987896175 1.163490676 0.830334885 1.106789889 1.032045971 0.925289062 1.019845289 1.129665546 1 17.68084402 -4.334728547 4.325705882 1.022080437 0.899076487 0.139439193 0.092651107 0.386198642 12.61552962 0.022370102 0.115237758 4.63E-05 4.334728547 -0.12300395 YGQFSGLNPGGRPIT(ph)PPR ddPTM_HeLa_A485_30min_R1 4 YGQFSGLNPGGRPITPPR 18 1 P62136-3;P62136;P62136-2 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 1 0 YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR ;;; 192.63 3.25E-18 2514130000 1977140 2048440 2187300 2337190 3031740 2162220 2830230 2591390 2228620 3008010 TRUE FALSE FALSE 2416947.972 2287987.239 2996473.291 2464864.772 2729889.321 2275430.496 2225528.24 1955847.539 2675883.592 2258168.465 1.070313402 1.013204849 1.326948515 1.091532722 1.208895334 1.007644262 0.985545708 0.866121182 1.184979612 1 21.10672169 -6.324231426 8.450503443 0.998621436 1.142375787 0.275531657 0.1074641 0.480418447 60.71911292 0.037465006 0.033043247 4.74E-07 6.324231426 0.143754351 YGQFSGLNPGGRPIT(ph)PPR ddPTM_HeLa_A486_30min_R1 4 YGQFSGLNPGGRPITPPR 18 1 P62136-3;P62136;P62136-2 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 1 0 YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR;YGQFSGLNPGGRPIT(1)PPR ;;; 171.06 2.89E-12 2726390000 2136460 2715670 2402840 918950 2869760 2782640 3061460 2949170 2575000 2846490 TRUE FALSE FALSE 1986705.187 2500470.419 3333283.998 2139362.041 2509807.941 2439346.169 2295450.327 2277708.371 2798203.073 2133710.376 0.931103494 1.171888391 1.562200772 1.00264875 1.176264581 1.143241461 1.075802205 1.067487132 1.311425911 1 21.02493293 YGQSS(ph)PR ddPTM_HeLa_A486_30min_R1 1 YGQSSPR 7 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 YGQS(0.024)S(0.976)PR 67.838 0.022965 173970000 641110 533150 602310 236670 632680 660580 645500 577060 670220 752730 TRUE FALSE FALSE 596171.4997 490901.2523 835540.5624 550979.7206 553323.3749 579084.3559 483989.0726 445676.0351 728315.2092 564241.5086 1.056589228 0.870019743 1.480820801 0.976496256 0.980649893 1.026305841 0.857769351 0.78986751 1.2907863 1 19.10595328 -5.438289309 24.99999615 0.975746053 1.129135326 0.112601513 0.186272638 182.4597972 53922.10612 0.051954609 0.07706112 3.65E-06 5.438289309 0.153389273 YGRPPDS(ph)HHSR ddPTM_HeLa_A486_30min_R1 1 YGRPPDSHHSR 11 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 YGRPPDS(0.991)HHS(0.009)R 56.599 0.021834 55392000 27666 29773 36071 1989.2 45198 27182 25204 31735 27554 10100 TRUE FALSE FALSE 25726.75627 27413.67905 50038.65721 4630.958129 39528.84539 23828.56121 18897.69262 24509.63327 29942.40291 7570.89426 3.398113272 3.620930118 6.609345673 0.611679145 5.221159354 3.147390571 2.496097815 3.237349833 3.954936085 1 12.886248 -9.713247265 0.275721394 3.65E-13 4.001340458 0.213327879 1.493809502 18.93058012 1.485397331 21.16242397 2.0254744 1.94E-10 9.713247265 4.001340458 YGRPPDSHHS(ph)R ddPTM_HeLa_A485_30min_R1 1 YGRPPDSHHSR 11 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 YGRPPDS(0.002)HHS(0.998)R 55.724 0.022867 33231000 18597 27848 27938 9180.6 37802 25864 28538 41571 31941 26562 TRUE FALSE FALSE 22733.83849 31104.58135 38273.4288 9682.112931 34038.30015 27218.19905 22440.62317 31375.64707 38351.26572 19940.58224 1.140078972 1.559863247 1.919373684 0.485548156 1.706986273 1.364965111 1.12537452 1.573456918 1.923277127 1 14.28341991 -7.325385271 24.8589483 1.56127585 1.34397284 0.025929974 0.422183497 714.4529685 277738.8555 0.223711879 0.107467723 4.73E-08 7.325385271 -0.217303011 YGRPPDSHHS(ph)R ddPTM_HeLa_A486_30min_R1 2 YGRPPDSHHSR 11 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 1 0 YGRPPDS(0.003)HHS(0.997)R;YGRPPDS(0.006)HHS(0.994)R ; 67.115 0.0094194 70247000 64036 67047 65155 4576.7 86731 77429 76403 93109 77542 39619 TRUE FALSE FALSE 59547.40708 61733.95154 90384.76091 10654.78889 75852.38925 67876.59722 57286.16129 71910.11326 84263.40299 29698.14452 2.005088467 2.078714092 3.043448079 0.358769515 2.554112065 2.285550101 1.928947488 2.421367207 2.837328875 1 14.85808518 YGRPPDSHHSR ddPTM_HeLa_A485_30min_R1 2 YGRPPDSHHSR 11 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 0 0 ; ; 101.39 0.0041005 403730000 230512 694180 743590 61016 756500 333040 389760 489670 463780 176865 FALSE FALSE TRUE 281788.5991 775358.3124 1018674.884 64349.14958 681180.2038 350477.4594 306484.592 369577.6647 556856.392 132775.8105 2.122288677 5.839605194 7.672142093 0.484645127 5.13030349 2.639618303 2.308286358 2.783471353 4.193959653 1 17.01863281 -5.262439251 24.99923199 2.811772247 5.274171186 0.296379258 1.796450796 115.8263167 2895967.775 0.487696964 0.773251928 5.46E-06 5.262439251 2.462398939 YGRPPDSHHSR ddPTM_HeLa_A486_30min_R1 1 YGRPPDSHHSR 11 1 Q01130-2;Q01130;J3QL05;J3KP15 Q01130-2 SRSF2 Serine/arginine-rich splicing factor 2 0 0 98.902 0.0052931 99252000 95978 103300 113980 2933.4 132090 51931 53590 58380 77013 14922 FALSE FALSE TRUE 89250.43783 95114.13179 158116.1085 6829.103446 115522.0405 45524.28122 40181.21518 45088.14843 83688.54885 11185.43407 7.97916623 8.503392104 14.13589383 0.610535398 10.32789964 4.069961068 3.592280364 4.030969932 7.481922319 1 13.44933362 -5.261079972 24.99990039 4.765075799 10.03587467 0.418978459 3.091092779 33.31114865 2317007.573 0.826379664 1.325043945 5.48E-06 5.261079972 5.270798874 YGS(ph)FEEAEASYPILNR ddPTM_HeLa_A485_30min_R1 2 YGSFEEAEASYPILNR 16 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 YGS(1)FEEAEASYPILNR;YGS(1)FEEAEASYPILNR ; 142.54 9.20E-08 136507000 72644 82215 68848 129830 108807 81992 141829 139385 109530 196609 TRUE FALSE FALSE 88803.40718 91829.32907 94317.7402 136922.2842 97973.79304 86284.97434 111526.0755 105200.6102 131511.6663 147597.9946 0.601657275 0.622158379 0.639017762 0.927670356 0.663788104 0.58459449 0.755606984 0.712750945 0.891012555 1 17.17131359 -14 0.112877306 2.010922283 0.539036793 0.521762576 0.097748818 143.31466 1.066226337 32.80536893 1.203426139 1.00E-14 14 -1.47188549 YGS(ph)FEEAEASYPILNR ddPTM_HeLa_A486_30min_R1 3 YGSFEEAEASYPILNR 16 0 O95425-3;O95425;A0A6I8PIX7;O95425-4 O95425-3;O95425-4 SVIL Supervillin 1 0 YGS(1)FEEAEASYPILNR;YGS(1)FEEAEASYPILNR;YGS(1)FEEAEASYPILNR ;; 325.24 3.07E-79 263960000 156235 150808 94787 83531 163863 197836 255672 265439 147948 280547 TRUE FALSE FALSE 145283.7333 138857.4248 131491.0649 194464.3894 143309.7746 173429.0058 191700.1614 205004.3342 160772.2518 210296.2051 0.690852853 0.660294487 0.62526599 0.924716589 0.681466289 0.824689184 0.911572138 0.974836108 0.764503818 1 17.68206329 -5.373654506 0.272932856 0.989084617 0.504951724 0.526364638 0.091331171 3.769317092 0.386210051 0.130356954 0.596676763 4.23E-06 5.373654506 -0.484132892 YGS(ph)PPQRDPNWNGER ddPTM_HeLa_A485_30min_R1 3 YGSPPQRDPNWNGER 15 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 YGS(1)PPQRDPNWNGER;YGS(1)PPQRDPNWNGER;YGS(1)PPQRDPNWNGER ;; 131.54 8.09E-06 5656500000 2120790 2143850 1700970 2936780 2889880 2253740 3520800 3211800 1934490 3711500 TRUE FALSE FALSE 2592552.419 2394554.608 2330229.586 3097208.855 2602153.4 2371742.341 2768552.318 2424101.014 2322724.399 2786291.355 0.930467094 0.859405677 0.836319426 1.111588294 0.933912886 0.851218354 0.993633459 0.870009882 0.833625814 1 21.40991469 -5.683898781 0.004018472 1.834686114 8.37E-08 0.018119499 0.085329508 196381.7653 217.7822344 48913.49576 50517.89557 2.07E-06 5.683898781 -1.83468603 YGS(ph)PPQRDPNWNGER ddPTM_HeLa_A486_30min_R1 4 YGSPPQRDPNWNGER 15 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 Y(0.001)GS(0.999)PPQRDPNWNGER;YGS(1)PPQRDPNWNGER;Y(0.011)GS(0.989)PPQRDPNWNGER;YGS(1)PPQRDPNWNGER ;;; 131.31 8.28E-06 6438730000 2141080 2281390.6 1371883 1251750 2242164.7 2410480 3097790 2921430 1700400 3392852.4 TRUE FALSE FALSE 1991001.349 2100604.9 1903112.838 2914137.26 1960931.496 2113099.486 2322690.177 2256284.163 1847792.041 2543260.075 0.78285401 0.825949702 0.748296588 1.145827471 0.771030661 0.830862524 0.913272771 0.887162184 0.726544666 1 21.27824757 -11.59507747 2.130112536 3.713930641 0.85346482 0.136009714 0.114195772 8949668.31 422466.0795 117859513.8 0.029912508 2.54E-12 11.59507747 -2.860465821 YGSPYPWPLNHILAYQK ddPTM_HeLa_A485_30min_R1 2 YGSPYPWPLNHILAYQK 17 0 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 0 ; ; 224.33 1.83E-25 24353000 44811 55558 48920 43846 66687 51517 74880 73687 47503 67629 FALSE FALSE TRUE 54779.05235 62055.02481 67017.54373 46241.19596 60047.40813 54214.35046 58881.27629 55615.14771 57036.41638 50770.33492 1.078957869 1.222269361 1.32001382 0.910791627 1.182726256 1.067835194 1.159757492 1.095426055 1.123420132 1 15.63169816 -13.99999975 0.087034568 0.586976993 1.241791262 0.138914137 0.10123498 449.9948412 2.732011606 35.03615891 2.668228022 1.00E-14 13.99999975 0.654814269 YGSPYPWPLNHILAYQK ddPTM_HeLa_A486_30min_R1 2 YGSPYPWPLNHILAYQK 17 0 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 0 ; ; 190.44 1.63E-14 23717000 37007 40130 29065 9448.8 47303 39173 45255 41835 38833 42830 FALSE FALSE TRUE 34413.0004 36949.95265 40319.74639 21997.28392 41369.81666 34340.23354 33931.72034 32310.08375 42199.07571 32105.08922 1.071886148 1.1509064 1.255867757 0.685165014 1.288575041 1.069619626 1.056895376 1.00638511 1.314404561 1 14.97051439 YGTELNQGDMKPPSYDS(ph)DEGNETEVQPQQNSQLMWK ddPTM_HeLa_A485_30min_R1 1 YGTELNQGDMKPPSYDSDEGNETEVQPQQNSQLMWK 36 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 YGTELNQGDMKPPS(0.152)Y(0.132)DS(0.714)DEGNET(0.001)EVQPQQNSQLMWK 118.23 1.57E-05 62454000 32010 23584 18635 47716 39742 33599 57862 54522 29765 65507 TRUE FALSE FALSE 39130.51407 26341.94365 25528.86197 50322.60426 35785.14694 35358.19169 45499.31101 41150.39401 35738.56248 49177.31047 0.795702605 0.535652385 0.51911871 1.023289069 0.727675967 0.718994011 0.925209422 0.836776018 0.726728691 1 15.58570521 -2.811973407 0.088094134 1.15780095 7.69E-08 0.267978254 0.140377954 149.0067858 1.404848057 3.531882961 21.61818752 0.001541795 2.811973407 -1.157800873 YGVYEDENYEVGS(ph)DDEEIPFK ddPTM_HeLa_A485_30min_R1 4 YGVYEDENYEVGSDDEEIPFK 21 0 O15541 O15541 RNF113A RING finger protein 113A 1 0 YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK ;;; 151.84 8.07E-10 676270000 574040 544900 481277 710170 777270 638000 846140 811720 544370 957410 TRUE FALSE FALSE 701733.2176 608621.315 659321.3899 748964.7889 699882.2696 671404.6935 665355.2767 612644.3973 653620.0657 718745.3068 0.976330852 0.846783011 0.917322706 1.042044771 0.973755603 0.934134369 0.925717734 0.852380379 0.909390377 1 19.45512111 -9.342568421 12.3652276 1 0.930168176 0.124600139 0.054939527 0 0 0.057336106 0.013906048 4.54E-10 9.342568421 -0.069831824 YGVYEDENYEVGS(ph)DDEEIPFK ddPTM_HeLa_A486_30min_R1 4 YGVYEDENYEVGSDDEEIPFK 21 0 O15541 O15541 RNF113A RING finger protein 113A 1 0 YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENYEVGS(1)DDEEIPFK ;;; 109.68 6.52E-05 822020000 650682 714700 407808 290433 671383 727230 846610 839920 533841 846210 TRUE FALSE FALSE 605072.5519 658064.5691 565722.1791 676142.7017 587171.8837 637511.7565 634779.2235 648688.5513 580114.7677 634313.5081 0.953901413 1.037443726 0.891865256 1.065944037 0.925680876 1.005042063 1.000734204 1.022662363 0.91455528 1 19.27483654 YGYLS(ph)LPKPMK ddPTM_HeLa_A485_30min_R1 2 YGYLSLPKPMK 11 1 Q9UBT7-3;Q9UBT7-2;Q9UBT7 Q9UBT7-3 CTNNAL1 Alpha-catulin 1 0 YGYLS(1)LPKPMK;YGYLS(1)LPKPMK ; 133.71 1.47E-05 2230050000 2456900 1687250 1203410 3048700 2422000 2387800 3706600 2995800 1933030 4773400 TRUE FALSE FALSE 3003428.929 1884559.21 1648601.437 3215242.761 2180857.176 2512821.516 2914654.63 2261075.353 2320971.39 3583479.228 0.838132088 0.525902089 0.460056089 0.897240519 0.608586526 0.701223966 0.813358874 0.630972083 0.647686576 1 21.77292956 -14 0.359937385 4.968581635 0.667660448 0.344404544 0.131324473 557.973891 4.45964589 1715.596459 0.097342603 1.00E-14 14 -4.300921187 YGYLS(ph)LPKPMK ddPTM_HeLa_A486_30min_R1 2 YGYLSLPKPMK 11 1 Q9UBT7-3;Q9UBT7-2;Q9UBT7 Q9UBT7-3 CTNNAL1 Alpha-catulin 1 0 YGYLS(1)LPKPMK;YGYLS(1)LPKPMK ; 126.63 2.76E-05 1797760000 2006630 1761840 704280 847730 1717270 2288700 2717000 2424500 1636350 3228800 TRUE FALSE FALSE 1865975.599 1622225.382 976996.0773 1973558.282 1501873.984 2006343.464 2037177.863 1872494.276 1778190.136 2420287.464 0.770972716 0.670261449 0.403669437 0.81542309 0.620535373 0.828969076 0.84170905 0.773666064 0.734702039 1 21.20674698 -6.266666643 23.87796649 0.822032128 0.651774451 0.353015666 0.120804198 291.1358046 1329892.35 0.041618504 0.03782512 5.41E-07 6.266666643 -0.170257677 YGYS(ph)PR ddPTM_HeLa_A486_30min_R1 1 YGYSPR 6 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 YGYS(1)PR 97.602 0.013017 353230000 536220 629050 531160 174850 740190 563470 665860 624870 521550 604670 TRUE FALSE FALSE 498633.747 579201.787 736839.377 407059.6364 647348.4682 493954.8003 499254.7853 482600.7418 566758.3739 453256.6963 1.10011336 1.277867027 1.6256558 0.898077491 1.428216006 1.089790409 1.101483529 1.064740457 1.250413681 1 18.78996881 -6.314766561 24.93793362 1.105344163 1.266188559 0.161087118 0.187813946 624.0172135 291813.5891 0.064451422 0.056840831 4.84E-07 6.314766561 0.160844396 YHFFLYK ddPTM_HeLa_A485_30min_R1 2 YHFFLYK 7 0 Q12792-4;Q12792;Q12792-3;F8VS81;D6RG15;H0Y858;Q6IBS0 Q12792-4 TWF1;TWF2 Twinfilin-1;Twinfilin-2 0 0 ; ; 103.71 0.0062723 86555000 389720 446910 420380 432530 599480 468290 642480 635510 389560 625400 FALSE FALSE TRUE 476411.8695 499172.2369 575896.0555 456158.0187 539793.6663 492808.9403 505208.8994 479650.1761 467741.1187 469499.2896 1.014723302 1.063201261 1.226617523 0.971584044 1.149722009 1.049647893 1.076058922 1.021620664 0.996255221 1 18.84076345 -7.332108925 1.672832677 0.995126507 1.084013233 0.206795254 0.066108412 0.614731022 3.087879989 0.051996835 0.019209788 4.65E-08 7.332108925 0.088886726 YHFFLYK ddPTM_HeLa_A486_30min_R1 2 YHFFLYK 7 0 Q12792-4;Q12792;Q12792-3;F8VS81;D6RG15;H0Y858;Q6IBS0 Q12792-4 TWF1;TWF2 Twinfilin-1;Twinfilin-2 0 0 ; ; 110.54 0.0046138 74767000 404980 401260 303780 141336 443840 423540 514840 473720 399310 468940 FALSE FALSE TRUE 376592.9933 369462.6962 421411.7515 329037.3507 388169.4486 371287.941 386021.5866 365864.2972 433922.5123 351514.3717 1.071344513 1.051060002 1.198846435 0.936056609 1.104277605 1.05625252 1.098167295 1.040823155 1.234437472 1 18.42322415 YHFLILLFSK ddPTM_HeLa_A485_30min_R1 1 YHFLILLFSK 10 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 107.15 0.0026741 4606400 31227 16932 15380 25435 23619 14420 30505 19683 13830 46795 FALSE FALSE TRUE 38173.33842 18912.05011 21069.70202 26824.44965 21267.40943 15175.0089 23987.35755 14855.71339 16605.55414 35129.8677 1.086634847 0.53834675 0.599766051 0.763579581 0.605393952 0.43196886 0.682819467 0.422879856 0.472690483 1 15.10041052 -4.257315193 24.66096763 0.595585706 1.086635082 0.420432589 0.165672448 314.3354428 1879511.354 0.039129579 0.292687164 5.53E-05 4.257315193 0.491049376 YHFLILLFSK ddPTM_HeLa_A486_30min_R1 1 YHFLILLFSK 10 0 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 116.3 0.01452 0 16583 21901 13890 28934 22186 25678 37407 26218 13272 25215 FALSE FALSE TRUE 15420.61733 20165.485 19268.57999 67359.81424 19403.225 22510.10943 28047.37295 20248.73373 14422.42765 18900.99988 0.815862517 1.066900435 1.019447654 3.563822797 1.026571352 1.190948076 1.483909483 1.071304897 0.763051042 1 14.20617494 -7.296499566 1.519056165 0.863920734 1.501753496 0.088965468 0.742008459 1.118373417 4.604052432 0.637548108 0.239627178 5.05E-08 7.296499566 0.637832762 YHGHS(ph)MSDPGVS(ph)YR ddPTM_HeLa_A485_30min_R1 6 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU3 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 2 0 YHGHS(1)MSDPGVS(1)YR;Y(0.006)HGHS(0.992)MS(0.002)DPGVS(0.946)Y(0.054)R;YHGHS(1)MSDPGVS(1)YR;YHGHS(0.999)MS(0.001)DPGVS(1)YR;YHGHS(0.999)MS(0.001)DPGVS(1)YR;YHGHS(1)MSDPGVS(1)YR ;;;;; 150.61 3.16E-08 9660860000 2015240 2310110 2089000 2146570 3345300 3159030 4359930 4660340 2872680 4032830 TRUE FALSE FALSE 2463523.186 2580257.269 2861808.031 2263831.684 3012230.186 3324431.926 3428395.338 3517384.308 3449200.526 3027519.7 0.813710043 0.852267706 0.945264875 0.747751264 0.994949822 1.098071113 1.13241058 1.161803937 1.139282604 1 21.52970492 -6.031149999 3.309310753 1.116924579 0.848209617 0.798472173 0.062623658 0.103206409 2.316729849 0.02076593 0.022039666 9.31E-07 6.031149999 -0.268714961 YHGHS(ph)MSDPGVS(ph)YR ddPTM_HeLa_A486_30min_R1 5 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU3 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 2 0 YHGHS(1)MSDPGVS(1)YR;YHGHS(1)MSDPGVS(1)YR;YHGHS(0.999)MS(0.001)DPGVS(1)YR;YHGHS(0.994)MS(0.006)DPGVS(1)YR;Y(0.001)HGHS(0.995)MS(0.006)DPGVS(0.99)Y(0.009)R ;;;; 176.11 1.04E-12 12558490000 2762641 3819860 3473020 1084653 4951090 4188170 4927710 4629070 4092700 3824680 TRUE FALSE FALSE 2568994.132 3517160.382 4817866.355 2525126.999 4330078.125 3671476.168 3694744.838 3575131.813 4447458.531 2866955.234 0.896070543 1.22679292 1.680481892 0.880769595 1.510340334 1.28061859 1.288734751 1.247013477 1.551282866 1 21.45108795 -4.301993841 4.35354968 1.312270267 0.879225235 0.219171034 0.228821463 0.255778486 10.31090623 0.053197658 0.304622734 4.99E-05 4.301993841 -0.433045032 YHGHS(ph)MSDPGVSYR ddPTM_HeLa_A485_30min_R1 8 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU3 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 1 0 YHGHS(0.924)MS(0.076)DPGVSYR;YHGHS(0.731)MS(0.269)DPGVSYR;YHGHS(0.625)MS(0.375)DPGVSYR;YHGHS(0.93)MS(0.07)DPGVSYR;YHGHS(0.99)MS(0.01)DPGVSYR;YHGHS(0.998)MS(0.002)DPGVSYR;YHGHS(0.998)MS(0.002)DPGVSYR;YHGHS(0.979)MS(0.021)DPGVSYR ;;;;;;; 201.04 4.51E-22 49343330000 6832850 9326770 7274830 6016970 9222480 8691480 10410650 11695240 8115270 11012180 TRUE FALSE FALSE 8352793.909 10417454.62 9966092.348 6345661.835 8304257.509 9146552.453 8186329.58 8826964.053 9743930.251 8267046.19 1.010372232 1.26011811 1.205520342 0.767585143 1.004501163 1.106387002 0.990236342 1.06772889 1.178647128 1 22.97894052 -3.915541856 15.15851304 1.063371035 0.000100099 0.01484165 0.132058058 5804337.183 16710749.4 0.034549428 201393386.9 0.000121467 3.915541856 -1.063270936 YHGHS(ph)MSDPGVSYR ddPTM_HeLa_A486_30min_R1 14 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU3 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 1 0 YHGHS(0.987)MS(0.013)DPGVSYR;YHGHS(0.999)MS(0.001)DPGVSYR;YHGHS(0.976)MS(0.023)DPGVSYR;YHGHS(0.744)MS(0.256)DPGVSYR;YHGHS(0.999)MS(0.001)DPGVSYR;YHGHS(0.992)MS(0.007)DPGVSYR;YHGHS(1)MSDPGVSYR;Y(0.008)HGHS(0.68)MS(0.312)DPGVSYR;YHGHS(1)MSDPGVSYR;YHGHS(1)MSDPGVSYR;YHGHS(0.581)MS(0.419)DPGVSYR;YHGHS(0.999)MS(0.001)DPGVSYR;YHGHS(0.999)MS(0.001)DPGVSYR;YHGHS(1)MSDPGVSYR ;;;;;;;;;;;;; 204.13 4.69E-22 85913790000 15201890 14767810 11431752 1936966 14546250 11625504 12847090 13255690 12147140 11125571 TRUE FALSE FALSE 14136316.01 13597554.95 15858432.53 4509354.737 12721723.69 10191267.52 9632612.199 10237658.76 13200063.88 8339655.606 1.695071917 1.630469601 1.901569235 0.540712345 1.525449525 1.222024985 1.155037169 1.227587713 1.582806833 1 22.99155638 -5.202758199 24.99973438 1.203786247 1.731180491 0.461491649 0.277862505 242.4433771 103286.6665 0.072249072 0.125139022 6.27E-06 5.202758199 0.527394244 YHGHSMS(ph)DPGVSYR ddPTM_HeLa_A485_30min_R1 1 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU3 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 1 0 YHGHS(0.372)MS(0.628)DPGVSYR 156.29 1.57E-08 21926000000 3339800 4293100 3179900 2775900 4503300 4038600 5183700 5971800 3806100 4788600 TRUE FALSE FALSE 4082726.988 4795140.7 4356277.337 2927540.388 4054935.64 4250054.851 4076160.148 4507206.687 4569949.358 3594890.148 1.13570285 1.333876837 1.211797067 0.814361571 1.127972059 1.18224888 1.133876135 1.253781479 1.271234772 1 21.77751625 -6.253180359 8.127417693 1.181986457 1.123892047 0.018894204 0.14012002 0.666473851 398.0776499 0.050816493 0.048610816 5.58E-07 6.253180359 -0.05809441 YHLDSSVGGPGPAAGPGGT(ph)RSPR ddPTM_HeLa_A485_30min_R1 2 YHLDSSVGGPGPAAGPGGTRSPR 23 1 Q6ZW31;Q6ZW31-2 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 1 0 YHLDSSVGGPGPAAGPGGT(0.5)RS(0.5)PR;YHLDSSVGGPGPAAGPGGT(0.5)RS(0.5)PR ; 165.87 2.73E-14 723200000 134266 217292 178341 160981 250406 185878 247061 298810 159676 233010 TRUE FALSE FALSE 164133.0085 242702.4092 244316.7573 169774.9844 225474.6994 195610.2847 194274.399 225526.379 191721.5086 174924.8952 0.938305598 1.387466369 1.396695176 0.970559303 1.288980045 1.118252976 1.110616066 1.289275484 1.096021857 1 17.4163761 -11.64009763 0.252847557 0.695829273 1.20987225 0.109617351 0.152157822 103.6446977 2.969909682 17.36568612 0.223639481 2.29E-12 11.64009763 0.514042977 YHLDSSVGGPGPAAGPGGT(ph)RSPR ddPTM_HeLa_A486_30min_R1 2 YHLDSSVGGPGPAAGPGGTRSPR 23 1 Q6ZW31;Q6ZW31-2 Q6ZW31 SYDE1 Rho GTPase-activating protein SYDE1 1 0 YHLDSSVGGPGPAAGPGGT(0.607)RS(0.393)PR;YHLDSSVGGPGPAAGPGGT(0.5)RS(0.5)PR ; 163.39 3.27E-14 523660000 219310 214100 208850 48464 322620 214666 248510 269840 188666 203110 TRUE FALSE FALSE 203937.5015 197133.9363 289722.3132 112826.6412 282153.9913 188182.6915 186330.1695 208403.3226 205019.7208 152249.934 1.33949156 1.294804741 1.902938843 0.741062004 1.853228989 1.236011646 1.223844009 1.36882373 1.346599735 1 17.21608208 -12.76156903 0.212280767 7.53E-11 1.427852286 0.118586613 0.308673771 177.1309403 2.837912913 76.87794161 0.627964394 1.73E-13 12.76156903 1.427852286 YHPDKNPNEGEK ddPTM_HeLa_A485_30min_R1 1 YHPDKNPNEGEK 12 1 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 98.902 0.0027806 4592600 6658.3 7080.6 5499.1 10399 9804 8718.9 13234 12205 7727.7 14591 FALSE FALSE TRUE 8139.415864 7908.614577 7533.445927 10967.07104 8827.879336 9175.408122 10406.44779 9211.704613 9278.578507 10953.73223 0.743072379 0.722001818 0.687751514 1.001217741 0.805924333 0.837651307 0.950036716 0.840964926 0.84707005 1 13.4191349 -1.603143765 0.192212311 0.962312582 3.20E-21 0.444884846 0.078598613 42.64882919 0.613995373 0.163457864 11.65238477 0.024937691 1.603143765 -0.962312582 YHPGYFGK ddPTM_HeLa_A485_30min_R1 1 YHPGYFGK 8 0 E9PLL6;P46776 E9PLL6 RPL27A 60S ribosomal protein L27a 0 0 119.89 0.010173 0 328100 296550 303200 435630 422360 318580 421510 342210 351320 533940 FALSE FALSE TRUE 401084.7131 331228.9429 415366.2972 459427.3638 380308.3554 335260.3562 331450.9451 258282.4609 421826.7015 400838.5844 1.000614034 0.826339968 1.036243299 1.146165518 0.948781804 0.836397416 0.826893812 0.644355287 1.052360521 1 18.61266186 -6.138749365 4.473096487 0.847465338 0.997641516 0.176632664 0.126686265 0.353634599 11.32538714 0.042943285 0.043105137 7.27E-07 6.138749365 0.150176178 YHRS(ph)SPYR ddPTM_HeLa_A485_30min_R1 2 YHRSSPYR 8 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 YHRS(0.66)S(0.34)PYR;YHRS(0.5)S(0.5)PYR ; 112.13 0.00054888 554360000 144321 417050 366870 31307 295660 249320 247878 357290 242870 75179 TRUE FALSE FALSE 176424.7085 465820.3696 502590.4797 33017.22214 266223.0523 262374.0097 194916.8403 269664.0673 291611.7813 56438.25887 3.125977167 8.253627575 8.90513793 0.585014896 4.717067068 4.648867895 3.453629581 4.778036614 5.166916682 1 15.78438586 -5.248183543 24.99684802 3.735258196 6.91078537 0.342036174 2.062185739 918.8895646 1732769.17 0.550349131 0.946182632 5.65E-06 5.248183543 3.175527174 YHRS(ph)SPYR ddPTM_HeLa_A486_30min_R1 2 YHRSSPYR 8 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 YHRS(0.522)S(0.477)PYR;YHRS(0.881)S(0.119)PYR ; 99.343 0.0011414 296926000 165775 168872 192913 9432.1 209076 86478 107728 113571 120555 44461 TRUE FALSE FALSE 154155.0286 155489.9677 267614.08 21958.40547 182851.7385 75809.2236 80773.31497 87713.36254 131004.8045 33327.67621 4.625435857 4.665490829 8.029785165 0.658863982 5.486483288 2.27466275 2.423610769 2.631847537 3.930811247 1 15.02443311 -5.26426347 24.99999411 2.793143508 5.662762578 0.456751883 1.56280754 232.5546674 2058673.241 0.418510229 0.653092116 5.44E-06 5.26426347 2.869619069 YHRS(ph)SPYRER ddPTM_HeLa_A485_30min_R1 4 YHRSSPYRER 10 2 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 YHRS(0.935)S(0.065)PYRER;YHRS(0.969)S(0.031)PYRER;YHRS(0.942)S(0.058)PYRER;Y(0.002)HRS(0.499)S(0.499)PYRER ;;; 135.94 1.93E-05 232549000 61766 138446 126697 52787.7 163495 150914 156438 322962 87563 65298.7 TRUE FALSE FALSE 75505.63361 154636.0554 173567.4926 55671.35839 147216.8637 158815.6237 123013.7433 243755.0631 105136.0909 49020.93582 1.540273198 3.154490072 3.540680929 1.135664945 3.003142663 3.239750956 2.509412382 4.972468579 2.144718153 1 15.58111041 -5.937394008 24.99999076 3.018049532 2.4342074 0.017757474 1.148532571 216.6627362 86516.12467 0.345279108 0.391509733 1.16E-06 5.937394008 -0.583842132 YHRS(ph)SPYRER ddPTM_HeLa_A486_30min_R1 4 YHRSSPYRER 10 2 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 Y(0.001)HRS(0.499)S(0.499)PYRER;Y(0.001)HRS(0.498)S(0.498)PY(0.003)RER;YHRS(0.813)S(0.187)PYRER;YHRS(0.887)S(0.113)PYRER ;;; 79.089 0.0036726 60014000 44914.5 39706.7 60900 11633.2 103116 38263.1 47947 61989 29695.4 28385.5 TRUE FALSE FALSE 41766.22549 36560.19648 84482.11096 27082.67751 90182.22976 33542.58775 35950.15347 47875.45791 32269.42118 21277.58604 1.962921236 1.718249261 3.970474414 1.272826601 4.238367528 1.576428251 1.689578573 2.250041796 1.516592207 1 14.37704686 -7.641381297 0.707050272 1.04496442 2.520232538 0.200791984 0.934701545 1.071355738 1.16623748 0.871030459 0.376054908 2.28E-08 7.641381297 1.475268119 YHRSS(ph)PYR ddPTM_HeLa_A485_30min_R1 2 YHRSSPYR 8 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 YHRS(0.203)S(0.797)PYR;YHRS(0.033)S(0.967)PYR ; 107.79 0.00064412 579470000 117363 345740 297740 30909 274230 236320 228230 292070 227450 71138 TRUE FALSE FALSE 143469.9945 386171.2855 407886.416 32597.4804 246926.6983 248693.3498 179466.796 220439.3746 273097.1287 53404.6058 2.686472305 7.231048328 7.637663642 0.610387062 4.623696676 4.656777184 3.360511577 4.127722155 5.113737376 1 15.70467655 -5.239588245 24.99735899 3.593633086 5.989659846 0.261626621 1.88775869 1140.433862 1304637.144 0.500673115 0.866267967 5.76E-06 5.239588245 2.39602676 YHRSS(ph)PYR ddPTM_HeLa_A486_30min_R1 1 YHRSSPYR 8 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 YHRS(0.309)S(0.691)PYR 97.813 0.001269 228610000 86629 71976 106040 8644.9 110340 48269 54023 70103 61071 21611 TRUE FALSE FALSE 80556.75445 66272.35963 147101.5278 20125.76409 96500.12832 42314.06154 40505.874 54142.07724 66364.68345 16199.46494 4.972803409 4.091021518 9.080641147 1.24237215 5.956994796 2.612065381 2.500445179 3.342213922 4.096720707 1 13.98365854 -5.780709708 1.145838467 2.89086323 5.556913135 0.250165338 1.968860954 0.7235701 2.015060558 0.813136031 1.179857464 1.66E-06 5.780709708 2.666049904 YHS(ph)LGNISR ddPTM_HeLa_A485_30min_R1 2 YHSLGNISR 9 0 G5E9A7;Q09019;M0R0L4;R4GMW3 G5E9A7 DMWD Dystrophia myotonica WD repeat-containing protein 1 0 YHS(1)LGNISR;YHS(1)LGNISR ; 134.56 0.0002155 202700000 60932 78517 99200 73892 93828 77173 110758 113181 81248 101663 TRUE FALSE FALSE 74486.11319 87698.88014 135898.2081 77928.53286 84486.15487 81213.65895 87093.64849 85423.18229 97553.72835 76320.28507 0.975967439 1.149090049 1.780630247 1.02107235 1.10699475 1.064116295 1.141159895 1.119272317 1.278214937 1 16.21977894 YHS(ph)LGNISR ddPTM_HeLa_A486_30min_R1 1 YHSLGNISR 9 0 G5E9A7;Q09019;M0R0L4;R4GMW3 G5E9A7 DMWD Dystrophia myotonica WD repeat-containing protein 1 0 YHS(1)LGNISR 170.66 4.37E-06 187790000 40894 43583 39031 15532 47593 52583 61023 51746 39367 49989 TRUE FALSE FALSE 38027.54178 40129.32435 54144.84849 36159.28094 41623.44215 46095.84408 45754.39996 39964.56541 42779.36326 37471.42903 1.014840981 1.070931251 1.444963533 0.964982705 1.110804771 1.230159759 1.22104764 1.066534329 1.141652837 1 15.19350338 -8.422039156 1.158632094 1.000642978 1.149214177 0.09663191 0.12851254 3.833888402 7.767755214 0.123488723 0.038021904 3.78E-09 8.422039156 0.1485712 YHSDFNRQDR ddPTM_HeLa_A485_30min_R1 1 YHSDFNRQDR 10 1 Q15424;Q15424-4;Q15424-3;Q15424-2;K7EII0 Q15424 SAFB Scaffold attachment factor B1 0 0 91.855 0.010136 172910000 18422 24847 17099 21955 18894 48528 23860 29614 16055 21299 FALSE FALSE TRUE 22519.91034 27752.64051 23424.63165 23154.34606 17012.84702 51068.85104 18762.11608 22351.12007 19277.09123 15989.55128 1.408414154 1.735673505 1.464996187 1.448092298 1.063997777 3.193888943 1.173398537 1.397857868 1.205605517 1 13.96484183 YHSDFNRQDR ddPTM_HeLa_A486_30min_R1 1 YHSDFNRQDR 10 1 Q15424;Q15424-4;Q15424-3;Q15424-2;K7EII0 Q15424 SAFB Scaffold attachment factor B1 0 0 97.456 0.0071643 62025000 44020 42900 28815 15571 50520 38419 43195 45233 31845 46622 FALSE FALSE TRUE 40934.42532 39500.44776 39972.93969 36250.07491 44183.31052 33679.2544 32387.15413 34934.43333 34605.35024 34947.54774 1.171310377 1.130278097 1.143798128 1.037270918 1.264274989 0.96370866 0.926736101 0.99962474 0.990208254 1 15.09290361 -6.289911842 24.77468461 0.9729496 1.141785819 0.707603169 0.055585409 357.5965426 311153.4886 0.018911439 0.016681342 5.13E-07 6.289911842 0.168836218 YHSQS(ph)PSMCDRK ddPTM_HeLa_A485_30min_R1 1 YHSQSPSMCDRK 12 1 Q12946 Q12946 FOXF1 Forkhead box protein F1 1 0 YHS(0.059)QS(0.936)PS(0.005)MCDRK 118.62 0.00030425 0 113650 131630 96086 116480 135450 124340 156310 203580 100730 170990 TRUE FALSE FALSE 138931.0504 147022.9835 131632.2099 122843.0075 121964.1224 130850.2501 122913.0916 153651.6858 120945.587 128365.3398 1.082309684 1.145347986 1.025449783 0.956979568 0.950132821 1.019358109 0.957525542 1.196987333 0.94219816 1 16.96989618 -4.857995885 5.832586564 1.007002847 1.113013928 0.270318188 0.071252123 0.261771375 12.88698583 0.018799483 0.04043574 1.39E-05 4.857995885 0.106011081 YHSQS(ph)PSMCDRK ddPTM_HeLa_A486_30min_R1 2 YHSQSPSMCDRK 12 1 Q12946 Q12946 FOXF1 Forkhead box protein F1 1 0 YHS(0.003)QS(0.994)PS(0.003)MCDRK;YHS(0.003)QS(0.989)PS(0.008)MCDRK ; 97.268 0.00081109 261290000 157815 143234 94550 56552 152572 150578 171563 175850 115421 197545 TRUE FALSE FALSE 146752.9835 131883.6162 131162.2921 131655.914 133434.9971 132001.2173 128636.1228 135812.7938 125425.7852 148078.4462 0.991048915 0.890633442 0.885762213 0.889095728 0.901110192 0.891427623 0.868702543 0.917167875 0.847022564 1 17.17600214 -4.260002454 24.63399937 0.894563521 0.991048954 0.33587475 0.038382599 101.5201097 1740197.674 0.00850635 0.051584074 5.50E-05 4.260002454 0.096485434 YHTINGHNAEVR ddPTM_HeLa_A485_30min_R1 8 YHTINGHNAEVR 12 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;;;;; ;;;;;;; 266.78 8.30E-40 3722252000 676973 907908 832160 596837 942215 887038 969441 1110693 775040 825737.4 FALSE FALSE TRUE 827563.3083 1014079.943 1140010.613 629440.694 848404.7663 933481.9381 762312.0107 838293.8003 930583.4189 619896.2628 1.3350029 1.635886525 1.839034499 1.01539682 1.36862378 1.505867988 1.229741259 1.352313041 1.501192175 1 19.24166728 -13.04299197 0.12285604 6.35E-11 1.621110718 0.263648031 0.211855074 164.9207563 1.640833355 44.19663918 2.09088988 9.06E-14 13.04299197 1.621110718 YHTINGHNAEVR ddPTM_HeLa_A486_30min_R1 7 YHTINGHNAEVR 12 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;;;; ;;;;;; 275.44 2.18E-40 2783636000 561047.2 503827.5 409988.3 90097 618049.8 464315 517720.5 512101.5 421402.3 482650.8 FALSE FALSE TRUE 521720.6885 463902.374 568746.7496 209750.3693 540528.231 407032.5361 388181.355 395507.1675 457929.7907 361791.8982 1.442046356 1.282235385 1.572027324 0.579754191 1.494030778 1.125046023 1.072940983 1.093189675 1.265727046 1 18.46480058 YHTSQSGDEMTSLSEYVSR ddPTM_HeLa_A485_30min_R1 1 YHTSQSGDEMTSLSEYVSR 19 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 152.06 1.93E-10 15816000 7480.2 13356 14916 5420.4 19324 12165 12664 13692 13075 11471 FALSE FALSE TRUE 9144.144684 14917.86802 20434.04911 5716.502727 17400.03471 12801.94059 9958.232945 10334.01553 15699.03257 8611.490808 1.061853852 1.732321192 2.372881718 0.663822659 2.020560098 1.486611421 1.156388965 1.200026309 1.823033075 1 13.0720473 -6.532656105 22.36159527 1.312954796 1.591525708 0.066086361 0.48486932 177.3530648 405605.1637 0.180826185 0.140347548 2.93E-07 6.532656105 0.278570913 YHTVNGHNCEVR ddPTM_HeLa_A485_30min_R1 8 YHTVNGHNCEVR 12 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ;;;;;;; ;;;;;;; 247.88 1.40E-30 3977696000 603832 779194 876985 603484.5 972709 745197 1026760 903161 769196 859256 FALSE FALSE TRUE 738152.3452 870313.9602 1201418.246 636451.3301 875862.6766 784214.3626 807384.3381 681659.3486 923566.5817 645059.2926 1.144317047 1.349199942 1.862492735 0.986655548 1.357801812 1.215724464 1.251643604 1.056739057 1.431754557 1 19.29907225 -5.306164138 24.99999869 1.199286149 1.441725018 0.241909509 0.214822013 657.7838946 367683.0378 0.05921862 0.087835794 4.94E-06 5.306164138 0.242438868 YHTVNGHNCEVR ddPTM_HeLa_A486_30min_R1 9 YHTVNGHNCEVR 12 0 F8W6I7;P09651-2;P09651;P09651-3;F8VZ49;F8VTQ5;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ;;;;;;;; ;;;;;;;; 241.84 1.53E-27 3161057000 529871.7 501591.1 418925.3 111744.4 609390 494328.3 538204 522868.5 433093.5 548876.2 FALSE FALSE TRUE 492730.4301 461843.1945 581144.3954 260146.6104 532954.6239 433343.1003 403539.6667 403822.7567 470634.3933 411434.0269 1.197592804 1.122520658 1.412485009 0.632292405 1.295358646 1.053250514 0.980812573 0.98150063 1.143887871 1 18.65030159 YHVLVNLGK ddPTM_HeLa_A485_30min_R1 2 YHVLVNLGK 9 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ; ; 131.06 0.00047873 39608000 111128 103533 92598 135628 143806 98205 138285 105990 97512 189313 FALSE FALSE TRUE 135848.0402 115640.2837 126853.8535 143037.0142 129488.1697 103346.8619 108739.2801 79995.78631 117081.764 142120.7531 0.955863498 0.813676266 0.892577971 1.00644706 0.911113731 0.72717643 0.76511894 0.562871956 0.82381891 1 17.11675771 -6.256169831 23.45793706 0.747809347 0.913985401 0.265190863 0.111864266 214.7327411 955904.853 0.036328241 0.03525165 5.54E-07 6.256169831 0.166176054 YHVLVNLGK ddPTM_HeLa_A486_30min_R1 2 YHVLVNLGK 9 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ; ; 141.39 0.00014356 41977000 103644 99421 69761 35618.7 90314 106383 120677 110035 86296 120493 FALSE FALSE TRUE 96379.09082 91542.51787 96774.32746 82922.13367 78985.97598 93258.54708 90482.33821 84982.43255 93776.20676 90320.76852 1.067075628 1.013526782 1.07145155 0.918084899 0.874505136 1.032526058 1.001788843 0.940895809 1.038257405 1 16.46277014 -5.248802351 24.92842572 0.969495428 1.046968869 0.336275767 0.050279877 931.4866908 1837493.066 0.014188683 0.024360231 5.64E-06 5.248802351 0.077473441 YHWLVLPWTSISSLK ddPTM_HeLa_A485_30min_R1 2 YHWLVLPWTSISSLK 15 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;Q7Z2E3-6;Q7Z2E3-3;A0A5K1VW64;Q7Z2E3-2 Q7Z2E3 APTX Aprataxin 0 0 ; ; 226.04 4.24E-23 22464000 27265 31627 29041 28318 43560 33122 53728 49359 20682.1 41086 FALSE FALSE TRUE 33330.00519 35325.50253 39784.4744 29864.94064 39223.01345 34856.2167 42248.57388 37253.62786 24832.80776 30844.01633 1.08059874 1.145295157 1.289860373 0.968257192 1.271657135 1.130080348 1.369749433 1.207807293 0.805109409 1 14.91270302 -7.751983696 24.99123426 0.902554694 1.185493919 0.482851649 0.116033213 140.519439 371397.6544 0.078559487 0.028823967 1.77E-08 7.751983696 0.282939225 YHWLVLPWTSISSLK ddPTM_HeLa_A486_30min_R1 1 YHWLVLPWTSISSLK 15 0 Q7Z2E3;Q7Z2E3-5;A0A0A0MRW7;C9J8U3;Q7Z2E3-10;Q7Z2E3-7;Q7Z2E3-8;Q7Z2E3-11;Q7Z2E3-9;Q7Z2E3-4;Q7Z2E3-6;Q7Z2E3-3;A0A5K1VW64;Q7Z2E3-2 Q7Z2E3 APTX Aprataxin 0 0 213.82 1.64E-22 8702000 9317.7 10090 6983.1 3573.7 11713 12724 15577 14222 11499 12363 FALSE FALSE TRUE 8664.577347 9290.431653 9687.143334 8319.754205 10243.84632 11154.24225 11679.46984 10983.96106 12495.74258 9267.22433 0.934970066 1.002504237 1.045312274 0.897761175 1.10538452 1.203622773 1.260298599 1.185248212 1.348380284 1 13.17792158 -6.023657303 3.414656476 1.213502988 0.978002785 0.584858821 0.090210162 0.160534867 3.898593729 0.028800945 0.030691971 9.47E-07 6.023657303 -0.235500203 YIASVQGST(ph)PS(ph)PR ddPTM_HeLa_A485_30min_R1 2 YIASVQGSTPSPR 13 0 P49792;F8WBP7 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 YIAS(0.003)VQGS(0.067)T(0.932)PS(0.998)PR;YIASVQGS(0.041)T(0.959)PS(0.999)PR ; 125.73 7.73E-05 369920000 333850 462990 500560 424550 637180 431620 547750 558120 456910 655210 TRUE FALSE FALSE 408113.7807 517132.653 685737.974 447742.0915 573740.1219 454218.9558 430718.7378 421240.1949 548607.646 491878.2052 0.829704948 1.051342888 1.394121485 0.910270239 1.166427209 0.923437857 0.875661359 0.856391258 1.115332292 1 18.90794161 -6.282356379 23.6642941 0.940282533 1.0784075 0.117467239 0.156199992 813.9487076 920850.6979 0.055302659 0.048838113 5.22E-07 6.282356379 0.138124968 YIASVQGST(ph)PS(ph)PR ddPTM_HeLa_A486_30min_R1 1 YIASVQGSTPSPR 13 0 P49792;F8WBP7 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 YIAS(0.003)VQGS(0.025)T(0.972)PS(1)PR 69.716 0.029039 301600000 265660 299570 257200 112340 365400 283260 334760 350870 231410 399760 TRUE FALSE FALSE 247038.6059 275830.9822 356794.7281 261533.1973 319568.1248 248314.2612 250999.5073 270984.5604 251468.8051 299657.494 0.82440323 0.920487516 1.190675138 0.872773759 1.066444628 0.828660274 0.837621325 0.904314312 0.83918744 1 18.19295493 -6.276961287 24.75870838 0.873205356 0.978238296 0.158492074 0.106059079 1255.408388 2002472.222 0.036939425 0.03269517 5.28E-07 6.276961287 0.105032939 YIASVQGSTPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 YIASVQGSTPSPR 13 0 P49792;F8WBP7 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 YIASVQGS(0.001)T(0.008)PS(0.991)PR;YIASVQGST(0.001)PS(0.999)PR ; 158.14 1.13E-08 770240000 472960 485080 357500 127677 488940 426860 515050 562270 400460 452970 TRUE FALSE FALSE 439807.9464 446640.4942 495933.5742 297238.5084 427612.586 374198.3532 386179.0424 434253.3953 435172.1952 339543.3637 1.295292423 1.315415178 1.460589802 0.87540662 1.259375478 1.102063516 1.137348226 1.278933538 1.281639525 1 18.37323631 -5.221680246 24.99995968 1.149250648 1.352930726 0.388461135 0.12744675 596.0578218 374791.655 0.034080187 0.059027574 6.00E-06 5.221680246 0.203680078 YIDQEELNK ddPTM_HeLa_A485_30min_R1 2 YIDQEELNK 9 0 P08238;P07900;P07900-2;Q14568;Q58FF8 P08238;P07900;Q58FF8 HSP90AB1;HSP90AA1;HSP90AA2P;HSP90AB2P Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 217.64 1.23E-16 128273000 200132 211650 157357 275420 285520 261120 331640 349400 211330 370750 FALSE FALSE TRUE 244650.673 236400.6264 215569.9025 290465.4972 257092.6263 274791.8394 260782.4048 263709.1022 253741.9926 278328.8481 0.878998618 0.849357255 0.774515124 1.04360543 0.923700967 0.987291979 0.93695787 0.94747312 0.911662568 1 18.08643092 -5.255231367 24.99563274 0.96031249 0.835797026 0.645352493 0.044117968 317.0198487 1276429.137 0.011735071 0.01967892 5.56E-06 5.255231367 -0.124515464 YIEIDS(ph)DEEPR ddPTM_HeLa_A485_30min_R1 4 YIEIDSDEEPR 11 0 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR ;;; 232.5 8.05E-19 4072000000 3453870 5554920 3556700 2732290 2711900 3477420 3302340 3582140 2976960 3160330 TRUE FALSE FALSE 4222171.466 6204519.573 4872471.337 2881548.084 2441893.714 3659492.334 2596768.081 2703614.548 3574408.566 2372517.893 1.77961628 2.615162394 2.05371321 1.21455273 1.029241432 1.54245089 1.094519915 1.139554967 1.506588666 1 21.17798754 -5.214824581 4.430818893 1.221924436 2.221056439 0.737241496 0.255148255 0.097685756 4.278143755 0.067025928 0.117206255 6.10E-06 5.214824581 0.999132003 YIEIDS(ph)DEEPR ddPTM_HeLa_A486_30min_R1 3 YIEIDSDEEPR 11 0 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR ;; 217.88 8.91E-18 1678430000 2621460 2623970 1681030 458922 1438610 1806020 1692450 1523890 1827960 2523270 TRUE FALSE FALSE 2437709.191 2416037.061 2331969.836 1068393.609 1258166.119 1583211.615 1268981.109 1176933.513 1986409.045 1891426.768 1.288820287 1.277362202 1.232915741 0.564861208 0.665194202 0.837046214 0.670912102 0.622246408 1.050217263 1 20.85104349 -5.211977552 8.454344751 0.751283656 1.269375145 0.692564085 0.150181565 0.193330905 31.02248285 0.039646236 0.068652953 6.14E-06 5.211977552 0.518091489 YIEIDS(ph)DEEPRGELLSLR ddPTM_HeLa_A485_30min_R1 9 YIEIDSDEEPRGELLSLR 18 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(0.996)DEEPRGELLS(0.004)LR;YIEIDS(0.99)DEEPRGELLS(0.01)LR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR ;;;;;;;; 278.79 1.70E-69 3476860000 723739 901819 1238443 913968 1601491 1148193 1268231 1595361 1264627 1521287 TRUE FALSE FALSE 884732.2437 1007278.887 1696594.602 963895.7576 1442040.933 1208310.61 997263.0864 1204096.213 1518426.039 1142058.148 0.774682309 0.881985641 1.485558861 0.843998845 1.262668574 1.058011461 0.873215683 1.054321284 1.329552301 1 20.12320468 -4.540668271 24.99791861 1.106058069 0.801507783 0.27311246 0.189298991 252.3805869 354645.7166 0.046379053 0.122758174 2.88E-05 4.540668271 -0.304550286 YIEIDS(ph)DEEPRGELLSLR ddPTM_HeLa_A486_30min_R1 7 YIEIDSDEEPRGELLSLR 18 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR ;;;;;; 304.31 1.74E-79 5352127000 1231684 1802052 1988168 628493 2540525 1774687 1995417 2076629 1634000 1656240 TRUE FALSE FALSE 1145349.312 1659250.837 2758039.895 1463163.466 2221868.665 1555744.162 1496142.561 1603825.909 1775636.436 1241506.724 0.922547812 1.336481555 2.221526345 1.178538495 1.789654959 1.253109735 1.205102262 1.291838279 1.430226999 1 20.24366064 -6.428704456 24.99999996 1.252221206 1.5062794 0.119311808 0.341754186 126.3433039 33530.85223 0.121005136 0.106716461 3.73E-07 6.428704456 0.254058194 YIEIFK ddPTM_HeLa_A485_30min_R1 1 YIEIFK 6 0 P55795;E5RGV0;G8JLB6;P31943;E9PCY7;H0YB39;D6RBM0;E7EN40 P55795;G8JLB6 HNRNPH2;HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 119.7 0.02073 47705000 85570 110100 91066 94110 128760 119370 138500 155290 103530 125840 FALSE FALSE TRUE 104604.7513 122975.2373 124755.103 99250.991 115940.2023 125620.0286 108908.3436 117204.884 124307.5214 94470.40391 1.107275368 1.301732947 1.320573405 1.050604072 1.22726481 1.329728925 1.152830294 1.240651878 1.315835608 1 16.52757481 -10.17028584 6.193163043 0.99999834 1.228319949 0.356648526 0.091613067 2.07E-06 2.78E-07 0.087566566 0.021237857 6.76E-11 10.17028584 0.228321608 YIFDLFYK ddPTM_HeLa_A485_30min_R1 1 YIFDLFYK 8 0 P41223;P41223-2 P41223 BUD31 Protein BUD31 homolog 0 0 138.9 0.00092232 4881400 12933 11814 11785 12248 17965 13826 18527 16304 11932 21009 FALSE FALSE TRUE 15809.90123 13195.54453 16144.76191 12917.07723 16176.34152 14549.90798 14568.5551 12305.41844 14326.64295 15771.84294 1.002413053 0.836652037 1.023644603 0.81899606 1.025646881 0.922524275 0.92370658 0.780214366 0.90836835 1 13.94506363 -7.02504307 24.57935334 0.876966911 0.9350334 0.033090646 0.083298888 1486.194159 1458667.47 0.036039273 0.020937234 9.44E-08 7.02504307 0.05806649 YIFDLFYK ddPTM_HeLa_A486_30min_R1 1 YIFDLFYK 8 0 P41223;P41223-2 P41223 BUD31 Protein BUD31 homolog 0 0 121.99 0.0047228 5251300 9138.8 10280 9406.4 4378.5 12726 12930 12790 13079 11691 13098 FALSE FALSE TRUE 8498.217313 9465.375361 13048.80999 10193.36928 11129.78641 11334.82806 9589.806721 10101.19721 12704.38529 9818.175546 0.865559724 0.964066625 1.329046311 1.038214201 1.133590081 1.154473966 0.976740197 1.028826299 1.293965995 1 13.26123925 -4.535450747 24.97838635 1.11631765 0.890186354 0.360881884 0.112222848 192.081727 381632.9617 0.027770286 0.073572161 2.91E-05 4.535450747 -0.226131297 YIFTMLSSLAR ddPTM_HeLa_A485_30min_R1 3 YIFTMLSSLAR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 0 0 ;; ;; 276.09 4.43E-46 78495000 86773 120972 106915 81303 127784 87818 136855 159908 72994 129779 FALSE FALSE TRUE 106075.3545 135118.6231 146467.3076 85744.37702 115061.3763 92416.01469 107614.8112 120690.3123 87643.22626 97427.48371 1.088762128 1.386863521 1.503346921 0.880084076 1.180995053 0.94856206 1.10456318 1.238770701 0.899573949 1 16.57204118 -5.261412238 25 1.051272421 1.332378119 0.45261092 0.145556664 2.264452304 2084901.717 0.039465741 0.063091373 5.48E-06 5.261412238 0.281105699 YIFTMLSSLAR ddPTM_HeLa_A486_30min_R1 4 YIFTMLSSLAR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 0 0 ;;; ;;; 256.48 1.13E-35 75037000 104692 144876 135681 39818.6 145141 118496 157480 140885 133380 139594 FALSE FALSE TRUE 97353.63143 133395.4981 188220.3169 92699.71312 126936.0624 103877.1683 118076.8383 108808.561 144941.4858 104638.7538 0.930378353 1.274819255 1.798762983 0.885902304 1.213088438 0.992721764 1.128423591 1.03984955 1.385160665 1 16.67505774 YIFTMLSTLAR ddPTM_HeLa_A485_30min_R1 1 YIFTMLSTLAR 11 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 0 148.69 0.00056134 12020000 11044 12048 11577 11915 12869 11198 15439 16257 8072.6 16418 FALSE FALSE TRUE 13500.6997 13456.9088 15859.81406 12565.88628 11587.71717 11784.30996 12140.33152 12269.94526 9692.696774 12325.29475 1.095365261 1.091812331 1.286769556 1.019520144 0.940157409 0.956107761 0.984993201 0.995509276 0.786406895 1 13.58933453 -5.485834633 6.711112285 0.948915086 1.152555184 0.613366218 0.075916324 0.143125546 19.51756047 0.021461079 0.031196607 3.27E-06 5.485834633 0.203640098 YIFTMLSTLAR ddPTM_HeLa_A486_30min_R1 2 YIFTMLSTLAR 11 0 Q02880;Q02880-2;E9PCY5 Q02880 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 0 0 ; ; 148.69 2.64E-05 7859700 15449.9 18217.4 18354.3 5592.7 17662.8 17741.3 20168.8 17295.1 19294.5 20125.5 FALSE FALSE TRUE 14366.94179 16773.78688 25461.57651 13020.08824 15447.36692 15552.55879 15122.35292 13357.38328 20966.9628 15085.9438 0.952339607 1.111881835 1.687768219 0.8630609 1.023957607 1.030930447 1.002413446 0.885419133 1.389834343 1 13.88091734 YIMIFR ddPTM_HeLa_A485_30min_R1 2 YIMIFR 6 0 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 ; ; 130.16 0.016397 73750000 89258 125118 123603 95086 145565 107953 122066 141082 106336 134627 FALSE FALSE TRUE 109113.1342 139749.4617 169328.8932 100280.3074 131072.0375 113605.2522 95985.60191 106481.4183 127676.6598 101066.9665 1.07961224 1.382741231 1.675412838 0.992216457 1.296883067 1.124059186 0.949722795 1.053572913 1.263287741 1 16.62495201 -5.28958212 24.98525901 1.102644347 1.379604161 0.365354562 0.170301095 768.1372892 681954.2573 0.048708999 0.072263251 5.13E-06 5.28958212 0.276959814 YIMIFR ddPTM_HeLa_A486_30min_R1 1 YIMIFR 6 0 P55060;P55060-3;P55060-4 P55060 CSE1L Exportin-2 0 0 106.05 0.036466 42136000 52224 54197 48656 18473 60372 47203 52308 56644 47632 52093 FALSE FALSE TRUE 48563.36729 49902.23234 67496.90625 43006.07757 52799.58081 41379.57378 39219.98514 43747.39773 51760.78011 39048.57373 1.243665585 1.277952754 1.728537045 1.10134823 1.352151328 1.059694883 1.004389697 1.120332795 1.325548545 1 15.25298223 -5.859001891 1.656039561 1.110307869 1.383628483 0.308301016 0.173603392 0.457055061 2.588534693 0.064788699 0.080226075 1.38E-06 5.859001891 0.273320614 YIQHTYR ddPTM_HeLa_A485_30min_R1 2 YIQHTYR 7 0 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 ; ; 122.13 0.0022475 30746000 20077.3 23817 26302 19632.5 30245 27047 31681 30723 22505 29375 FALSE FALSE TRUE 24543.42612 26602.19097 36032.20432 20704.97376 27233.7016 28463.1391 24912.09554 23188.13608 27021.54707 22052.35311 1.112961778 1.206319835 1.633939206 0.938900881 1.234956717 1.29070757 1.129679695 1.051503935 1.225336223 1 14.42864499 -7.737029689 0.372775606 0.994595797 1.266978629 0.134679555 0.171043377 2.572037429 1.075256531 0.262827212 0.176291048 1.83E-08 7.737029689 0.272382832 YIQHTYR ddPTM_HeLa_A486_30min_R1 1 YIQHTYR 7 0 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 109.86 0.010546 101380000 54077 68383 62044 21528 86472 67034 73781 68513 57455 71697 FALSE FALSE TRUE 50286.48155 62964.08203 86069.0984 50118.27196 75625.87544 58764.02663 55320.21342 52914.08553 62435.24566 53743.60453 0.935673779 1.171564181 1.601476104 0.932543926 1.407160463 1.093414317 1.029335749 0.984565252 1.161724194 1 15.71380546 -6.50565719 23.90505892 1.045299305 1.21757073 0.145730592 0.191233004 798.1018754 1107840.717 0.067187254 0.057847845 3.12E-07 6.50565719 0.172271426 YIQNLQGLFALPFGR ddPTM_HeLa_A485_30min_R1 1 YIQNLQGLFALPFGR 15 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 0 0 143.96 5.23E-06 10633000 2611 2748.3 2685.7 2001.2 3397.8 2688.9 2511.8 2787.5 2326.3 2901.8 FALSE FALSE TRUE 3191.807942 3069.689778 3679.252191 2110.520489 3059.503102 2829.686646 1975.13341 2103.861254 2793.167072 2178.434664 1.465184151 1.409126392 1.688943099 0.968824323 1.404450247 1.298954104 0.906675533 0.965767434 1.282189968 1 11.08907613 -5.762677424 0.707346287 1.044150915 1.521443844 0.429035021 0.189749397 0.778359594 0.8379706 0.118235578 0.2133883 1.73E-06 5.762677424 0.477292929 YIQNLQGLFALPFGR ddPTM_HeLa_A486_30min_R1 1 YIQNLQGLFALPFGR 15 0 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 0 0 96.89 0.0070501 7719600 2531.8 2677.3 2352.5 863.05 3137.2 2061.6 2106.5 2488.3 1835 2229.8 FALSE FALSE TRUE 2354.333894 2465.140997 3263.451002 2009.224016 2743.703123 1807.260753 1579.43142 1921.768409 1994.059277 1671.443566 1.408563197 1.474857451 1.952474536 1.202089054 1.641517056 1.081257417 0.944950492 1.149765656 1.193016215 1 10.70687893 -6.270106372 24.45751892 1.075105302 1.537106941 0.598468852 0.189252025 338.4538168 955085.103 0.065502393 0.058688492 5.37E-07 6.270106372 0.46200164 YIS(ph)PDQLADLYK ddPTM_HeLa_A485_30min_R1 4 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 YIS(1)PDQLADLYK;Y(0.001)IS(0.999)PDQLADLYK;YIS(1)PDQLADLYK;YIS(1)PDQLADLYK ;;; 178.03 8.13E-12 277603000 359078 409741 326049 507502 515008 462909 612078 636340 378956 632170 TRUE FALSE FALSE 438953.6623 457656.6457 446668.0931 535225.5492 463731.9952 487146.1994 481302.5351 480276.6173 455008.9932 474581.6532 0.924927585 0.964336996 0.941182808 1.127783903 0.97713848 1.026474994 1.014161698 1.011999967 0.958758077 1 18.8562968 YIS(ph)PDQLADLYK ddPTM_HeLa_A486_30min_R1 4 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 YIS(1)PDQLADLYK;YIS(1)PDQLADLYK;YIS(1)PDQLADLYK;YIS(1)PDQLADLYK ;;; 206.43 2.93E-17 298382000 632103 551503 360729 286088 601997 585460 694635 723307 461213 743870 TRUE FALSE FALSE 587795.8439 507799.8937 500412.9295 666027.3221 526488.9229 513231.8977 520829.9759 558625.7858 501191.3142 557600.1102 1.054153027 0.910688295 0.897440514 1.194453354 0.944205199 0.920430051 0.934056444 1.001839446 0.898836469 1 19.08887132 YISENES(ph)PRPSQK ddPTM_HeLa_A486_30min_R1 1 YISENESPRPSQK 13 1 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 YISENES(1)PRPSQK 102.36 0.00029911 866030000 722350 690530 480120 249100 668740 689200 733680 829000 543620 790320 TRUE FALSE FALSE 671716.9952 635809.8879 666035.3221 579917.3888 584860.3934 604173.5113 550105.5039 640254.7969 590741.4193 592418.7279 1.133855099 1.073244072 1.124264461 0.978897799 0.987241567 1.019842019 0.928575479 1.080747057 0.997168711 1 19.17625772 -5.260362872 24.99951579 0.999742666 1.106733501 0.638043494 0.038460891 62.28151442 1446332.948 0.010385716 0.016757856 5.49E-06 5.260362872 0.106990835 YISENES(ph)PRPSQKK ddPTM_HeLa_A485_30min_R1 2 YISENESPRPSQKK 14 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 YISENES(1)PRPSQKK;YISENES(1)PRPSQKK ; 127.49 1.12E-05 718000000 577850 785830 429270 460710 832060 985090 1213420 1729230 551360 677350 TRUE FALSE FALSE 706390.7389 877725.9827 588074.8364 485877.4207 749217.1849 1036667.789 954162.9043 1305133.631 662012.8946 508499.1107 1.389168091 1.726111146 1.156491376 0.955512823 1.473389371 2.038681617 1.876429839 2.566638965 1.301895875 1 18.95588573 -6.093216027 5.347414809 1.858377154 1.313420832 0.173759569 0.437252024 0.317831916 14.19993848 0.142230029 0.143422086 8.07E-07 6.093216027 -0.544956322 YISENES(ph)PRPSQKK ddPTM_HeLa_A486_30min_R1 1 YISENESPRPSQKK 14 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 YISENES(1)PRPSQKK 148.52 3.01E-08 247460000 577890 360690 208520 186550 421970 327800 493000 553700 236620 583200 TRUE FALSE FALSE 537382.8952 332107.6108 289264.5284 434297.8277 369042.5879 287359.3688 369646.1856 427634.5972 257130.4121 437162.924 1.229250848 0.759688419 0.661685867 0.993446159 0.844176319 0.657327859 0.845557034 0.978204174 0.588179825 1 18.73781152 -4.256971391 24.18834239 0.811412319 1.229251118 0.439692861 0.140509306 267.2952925 1446971.571 0.033632184 0.256777947 5.53E-05 4.256971391 0.417838799 YISLIYTNYEAGKDDYVK ddPTM_HeLa_A485_30min_R1 2 YISLIYTNYEAGKDDYVK 18 1 P09211 P09211 GSTP1 Glutathione S-transferase P 0 0 ; ; 250.04 1.52E-46 354500000 138897 101025 74987 181370 136869 164298 246415 250890 94133 248570 FALSE FALSE TRUE 169794.1585 112838.9949 102727.8118 191277.7838 123241.8418 172900.3892 193766.4222 189358.8341 113024.6297 186606.0736 0.909906924 0.604690902 0.550506261 1.025035146 0.660438535 0.92655285 1.038371466 1.01475172 0.605685697 1 17.50963642 -5.668174277 1.280090458 0.912008453 0.701416104 0.156523258 0.176185854 0.776541157 2.653863967 0.06838582 0.107822121 2.15E-06 5.668174277 -0.210592349 YISPDQLADLYK ddPTM_HeLa_A485_30min_R1 4 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;; ;;; 234.39 1.07E-28 724120000 755870 795390 647170 900350 952660 948560 1229380 1275150 717710 1152900 FALSE FALSE TRUE 924010.6738 888403.9415 886585.114 949533.8407 857809.8254 998225.1348 966712.9199 962417.4631 861747.8138 865503.2476 1.067599314 1.026459397 1.024357929 1.097088709 0.991111042 1.153346493 1.116937369 1.11197441 0.995660982 1 19.72317971 -6.247072396 24.99193119 1.085166852 1.042653073 0.079699988 0.053366893 1716.244841 2985473.949 0.017331745 0.017249086 5.66E-07 6.247072396 -0.042513779 YISPDQLADLYK ddPTM_HeLa_A486_30min_R1 1 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 186.87 2.20E-11 276810000 632710 692280 417430 343510 827400 649130 787710 771700 544240 754470 FALSE FALSE TRUE 588360.2963 637421.2116 579070.0752 799708.64 723619.7768 569046.9405 590616.6265 596000.7561 591415.1614 565545.8012 1.040340667 1.127090344 1.023913667 1.414047524 1.279506939 1.006190726 1.044330318 1.053850554 1.04574229 1 19.10928434 -6.280797979 24.7473608 1.034282648 1.178874947 0.321145819 0.106723464 1009.495767 1290500.331 0.040872664 0.03610459 5.24E-07 6.280797979 0.144592299 YIT(ph)RHIMKENDVREVVEDWK ddPTM_HeLa_A485_30min_R1 1 YITRHIMKENDVREVVEDWK 20 3 P30532 P30532 CHRNA5 Neuronal acetylcholine receptor subunit alpha-5 1 0 Y(0.02)IT(0.98)RHIMKENDVREVVEDWK 56.247 0.019617 304610000 69824 132260 63460 43958 122960 189620 296300 501940 79020 70204 TRUE FALSE FALSE 85356.10791 147726.6565 86936.49479 46359.31423 110717.6707 199548.21 232993.0845 378838.428 94878.58919 52703.43481 1.619554935 2.802979673 1.649541346 0.879626051 2.100767646 3.786246773 4.420833012 7.188116474 1.800235403 1 15.68560937 -6.264634377 3.700137713 4.111036272 1.775911915 0.218702051 1.628222086 0.286397023 8.758147708 0.567660753 0.528337316 5.44E-07 6.264634377 -2.335124357 YK(ac)PVCNQVECHPYFNQR ddPTM_HeLa_A485_30min_R1 1 YKPVCNQVECHPYFNQR 17 1 P52895;B4DK69;S4R3P0;Q04828;H0Y804 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 1 YK(1)PVCNQVECHPYFNQR 56.959 0.032939 27126000 27472 32833 23718 31425 27659 42348 47810 45775 29482 42745 FALSE TRUE FALSE 33583.05162 36672.53374 32492.27519 33141.66818 24905.17284 44565.2758 37595.00293 34548.60948 35398.76698 32089.45816 1.046544677 1.142821844 1.012552939 1.032789897 0.776116964 1.388782433 1.171568642 1.076634242 1.1031276 1 14.96981181 -6.261841171 24.99999957 1.15428384 1.01225799 0.2445213 0.127336187 59.32188426 3691018.632 0.044405379 0.041640497 5.47E-07 6.261841171 -0.14202585 YKDAIHFYNK ddPTM_HeLa_A485_30min_R1 2 YKDAIHFYNK 10 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 ; ; 103.35 0.0040386 511210000 1143390 1386790 860260 1070490 1429410 1418670 1712420 2064700 1073290 1441480 FALSE FALSE TRUE 1397733.161 1548963.027 1178505.972 1128968.158 1287092.921 1492949.368 1346547.478 1558329.088 1288689.458 1082145.564 1.291631373 1.431381394 1.089045699 1.043268295 1.189389823 1.379619726 1.24433119 1.440036478 1.190865167 1 20.04546315 -10.88986576 1.688552985 0.832980078 1.256347022 0.264785317 0.12772133 269843.5563 93158.93636 179197.1874 0.03742436 1.29E-11 10.88986576 0.423366943 YKDAIHFYNK ddPTM_HeLa_A486_30min_R1 2 YKDAIHFYNK 10 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 ; ; 106.35 0.0031573 369380000 1495180 1133840 692680 477130 1309850 1217040 1367220 1320670 962250 1575110 FALSE FALSE TRUE 1390375.603 1043990.389 960904.2466 1110782.753 1145556.399 1066893.979 1025127.095 1019982.271 1045658.605 1180692.204 1.177593617 0.884218923 0.813848218 0.940789436 0.970241351 0.903617366 0.868242453 0.863884989 0.885631837 1 20.17120148 -4.259643698 24.77387323 0.898501481 1.177593724 0.714813425 0.05187746 75.53229516 1041975.975 0.013149282 0.082080494 5.50E-05 4.259643698 0.279092243 YKDANIMS(ph)PGSSLPSLHVR ddPTM_HeLa_A485_30min_R1 1 YKDANIMSPGSSLPSLHVR 19 1 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 YKDANIMS(1)PGSSLPSLHVR 148.28 1.07E-08 191430000 185600 298850 235860 88314 349440 266700 334850 411300 250560 217130 TRUE FALSE FALSE 226886.0797 333797.9079 323114.429 93138.3702 314648.5266 280663.9996 263306.562 310428.0301 300845.0937 163003.487 1.391909363 2.047796118 1.982254705 0.571388821 1.930317765 1.721828194 1.615343125 1.904425702 1.845635939 1 17.3145433 YKDIIRQPS(ph)EEEIIK ddPTM_HeLa_A485_30min_R1 2 YKDIIRQPSEEEIIK 15 2 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 YKDIIRQPS(1)EEEIIK;YKDIIRQPS(1)EEEIIK ; 221.86 5.89E-34 1431800000 1145350 1906270 852980 860040 2087020 2479900 3993600 6610100 1580700 1780180 TRUE FALSE FALSE 1400129.156 2129191.694 1168532.797 907021.8075 1879228.961 2609743.729 3140334.735 4988962.611 1897931.991 1336413.888 1.047676299 1.593212787 0.874379418 0.67869828 1.406172877 1.952796026 2.349821986 3.733096952 1.420167815 1 20.34993545 -6.301296318 2.440971714 2.335024559 1.076639293 0.307592863 0.713231664 0.30906925 3.62632679 0.271318462 0.244242069 5.00E-07 6.301296318 -1.258385266 YKDIIRQPS(ph)EEEIIK ddPTM_HeLa_A486_30min_R1 2 YKDIIRQPSEEEIIK 15 2 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 0 YKDIIRQPS(1)EEEIIK;YKDIIRQPS(1)EEEIIK ; 196.99 1.51E-25 547630000 699911 442283 253745 359950 672650 564706 955770 1211830 338922 1073310 TRUE FALSE FALSE 650850.8532 407234.8843 352001.8595 837981.7909 588279.9648 495038.3152 716626.2369 935922.7631 368300.0318 804546.1899 0.808966423 0.50616719 0.437516036 1.041558336 0.731194768 0.615301298 0.890721062 1.163292767 0.457773632 1 19.61781572 -5.252574231 24.98016373 0.837501481 0.57641162 0.233351674 0.214520998 951.9837628 2682488.029 0.057595494 0.097897484 5.59E-06 5.252574231 -0.261089861 YKDLDEDELLGNLS(ph)ETELK ddPTM_HeLa_A485_30min_R1 3 YKDLDEDELLGNLSETELK 19 1 H0YNU8;Q9NYL9 H0YNU8 TMOD3 Tropomodulin-3 1 0 YKDLDEDELLGNLS(0.993)ET(0.007)ELK;YKDLDEDELLGNLS(0.971)ET(0.029)ELK;YKDLDEDELLGNLS(1)ETELK ;; 342.56 5.96E-103 1256330000 926030 597972 338410 1487190 796616 724647 1373210 1085610 615958 1904570 TRUE FALSE FALSE 1132022.179 667899.6237 463601.9414 1568431.424 717302.114 762588.3964 1079812.465 819362.4453 739575.1207 1429795.75 0.791736987 0.467129395 0.324243474 1.096961873 0.501681526 0.533354779 0.755221482 0.573062583 0.51725928 1 20.44737764 -10.13630152 4.157233698 1.000089632 0.61569439 0.238129317 0.205031236 34744227.43 12102087.06 30433.3703 0.048618193 7.31E-11 10.13630152 -0.384395242 YKDLDEDELLGNLS(ph)ETELK ddPTM_HeLa_A486_30min_R1 5 YKDLDEDELLGNLSETELK 19 1 H0YNU8;Q9NYL9 H0YNU8 TMOD3 Tropomodulin-3 1 0 YKDLDEDELLGNLS(0.992)ET(0.008)ELK;YKDLDEDELLGNLS(0.996)ET(0.004)ELK;YKDLDEDELLGNLS(0.934)ET(0.066)ELK;YKDLDEDELLGNLS(0.997)ET(0.003)ELK;YKDLDEDELLGNLS(0.962)ET(0.038)ELK ;;;; 263.18 1.38E-58 2710870000 1991439 1739979 634152 1255239 1316366 2295451 2952008 2565290 1302547 3501490 TRUE FALSE FALSE 1851849.41 1602096.727 879712.6376 2922259.828 1151255.102 2012261.594 2213384.375 1981229.467 1415452.823 2624694.113 0.705548658 0.610393691 0.33516768 1.113371579 0.438624484 0.766665184 0.843292315 0.754842043 0.539282965 1 21.32371787 -14 0.169150304 2.178079436 0.609332326 0.169068997 0.208469376 239.2633118 2.250802185 95.39052342 0.74551093 1.00E-14 14 -1.568747111 YKDNPFSLGES(ph)FGSR ddPTM_HeLa_A485_30min_R1 2 YKDNPFSLGESFGSR 15 1 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2;E9PQP3 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 YKDNPFS(0.007)LGES(0.983)FGS(0.01)R;YKDNPFSLGES(0.991)FGS(0.009)R ; 111.49 0.00010418 308150000 643500 562630 433310 662460 731230 605350 870590 943440 522930 918060 TRUE FALSE FALSE 786644.355 628424.6843 593609.4005 698648.5124 658426.1737 637045.19 684581.3344 712059.8607 627877.2544 689204.5376 1.141380116 0.911811589 0.861296419 1.013702717 0.955342192 0.924319495 0.993291972 1.033161887 0.911017296 1 19.39457267 YKDNPFSLGES(ph)FGSR ddPTM_HeLa_A486_30min_R1 4 YKDNPFSLGESFGSR 15 1 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2;E9PQP3 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 YKDNPFS(0.001)LGES(0.973)FGS(0.027)R;YKDNPFSLGES(0.987)FGS(0.013)R;YKDNPFSLGES(0.997)FGS(0.003)R;YKDNPFSLGES(1)FGSR ;;; 168.05 2.09E-12 865700000 1315570 1349050 820400 594408 1232300 1353030 1612080 1615440 928580 1476880 TRUE FALSE FALSE 1223355.337 1242146.365 1138080.851 1383811.864 1077733.443 1186106.915 1208720.533 1247639.577 1009070.062 1107059.635 1.105049175 1.122022993 1.028021269 1.249988546 0.973509835 1.071402911 1.091829649 1.126984976 0.911486635 1 20.07830151 -7.758421738 24.99999643 0.955743294 1.094773449 0.388408122 0.070434603 72.3254637 599229.4436 0.05015782 0.017112904 1.74E-08 7.758421738 0.139030155 YKFLDDDGS(ph)ISPIEESTAEDEDATHLEDNECDIK ddPTM_HeLa_A485_30min_R1 1 YKFLDDDGSISPIEESTAEDEDATHLEDNECDIK 34 1 Q9H5J8 Q9H5J8 TAF1D TATA box-binding protein-associated factor RNA polymerase I subunit D 1 0 YKFLDDDGS(0.5)IS(0.5)PIEESTAEDEDATHLEDNECDIK 324.51 9.81E-111 58451000 37666 22726 18827 49550 42107 41416 65019 59517 26599 74537 TRUE FALSE FALSE 46044.67175 25383.60801 25791.89076 52256.79103 37914.67923 43584.47772 51127.15949 44920.36243 31937.17532 55956.29765 0.822868447 0.453632729 0.460929187 0.933885786 0.677576624 0.778902099 0.91369804 0.802775815 0.570752117 1 15.77201289 -5.257257656 24.99765971 0.800238501 0.566592382 0.328374405 0.15113338 414.7944017 2479563.543 0.040571995 0.067167121 5.53E-06 5.257257656 -0.233646119 YKFLDDDGSIS(ph)PIEESTAEDEDATHLEDNECDIK ddPTM_HeLa_A486_30min_R1 1 YKFLDDDGSISPIEESTAEDEDATHLEDNECDIK 34 1 Q9H5J8 Q9H5J8 TAF1D TATA box-binding protein-associated factor RNA polymerase I subunit D 1 0 YKFLDDDGS(0.016)IS(0.984)PIEESTAEDEDATHLEDNECDIK 240.4 4.85E-51 63846000 45005 41776 15712 33209 45795 54552 72098 67041 33102 79214 TRUE FALSE FALSE 41850.38191 38465.51761 21796.10718 77312.23029 40050.96408 47821.92888 54058.31783 51777.22779 35971.30801 59378.2988 0.704809379 0.647804305 0.367071937 1.302028382 0.674505078 0.805377214 0.910405298 0.871989074 0.605798899 1 15.85764814 -5.22489881 24.99999335 0.865524856 0.580686197 0.339825004 0.195903434 712.7231233 487623.5801 0.051518012 0.08922861 5.96E-06 5.22489881 -0.284838659 YKGQHVPGSPFQFTVGPLGEGGAHK ddPTM_HeLa_A485_30min_R1 1 YKGQHVPGSPFQFTVGPLGEGGAHK 25 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 106.45 1.08E-07 32759000 80423 76407 47354 69717 61120 69506 100630 87200 54634 86038 FALSE FALSE TRUE 98312.81889 85342.134 64872.21516 73525.46318 55034.67819 73145.22668 79129.57843 65814.06328 65598.54267 64590.31001 1.522098576 1.321283858 1.004364512 1.138335815 0.852057812 1.132448918 1.225099839 1.018946391 1.015609658 1 15.97903012 -4.557996779 2.964272066 1.054113349 1.508878857 0.717109984 0.097249778 0.1425176 2.385506956 0.026239437 0.110341274 2.77E-05 4.557996779 0.454765508 YKGQHVPGSPFQFTVGPLGEGGAHK ddPTM_HeLa_A486_30min_R1 2 YKGQHVPGSPFQFTVGPLGEGGAHK 25 1 Q60FE5;P21333-2;P21333;H0Y5C6 Q60FE5 FLNA Filamin-A 0 0 ; ; 142.32 5.92E-16 64621000 144828 120838 69018 33079 111273 134306 151162 128957 115034 176524 FALSE FALSE TRUE 134676.3051 111262.3568 95743.61797 77009.58372 97316.10276 117736.6912 113339.6688 99596.30621 125005.2397 132321.2414 1.017798077 0.840850309 0.723569526 0.58198958 0.735453369 0.889779222 0.856549316 0.7526857 0.9447103 1 17.01368515 -7.88692529 4.547557641 0.997457831 0.794404344 0.286480302 0.109904545 0.271840781 8.778377993 0.114584415 0.030089837 1.30E-08 7.88692529 -0.203053487 YKHDYVS(ph)H ddPTM_HeLa_A485_30min_R1 1 YKHDYVSH 8 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 YKHDYVS(1)H 53.237 0.023449 190510000 381480 416900 339400 442200 509810 475050 607950 648690 414150 590230 TRUE FALSE FALSE 466338.9099 465652.8285 464958.1836 466356.2663 459051.5263 499922.8834 478056.516 489597.7604 497266.1062 443096.5234 1.052454455 1.050906076 1.04933837 1.052493625 1.036007962 1.128248264 1.078899271 1.104946066 1.122252331 1 18.75726148 -6.241739796 24.91336955 1.092930199 1.048685528 0.239179158 0.033584533 961.5458801 1216033.025 0.010297612 0.010282048 5.73E-07 6.241739796 -0.044244671 YKHDYVS(ph)H ddPTM_HeLa_A486_30min_R1 2 YKHDYVSH 8 1 Q12888;Q12888-2;Q12888-3;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 YKHDYVS(0.999)H;YKHDYVS(1)H ; 57.348 0.019289 385880000 950190 872790 597770 338340 921600 930730 1061260 1052850 764960 1137010 TRUE FALSE FALSE 883586.5878 803626.9418 829242.5528 787672.6188 806004.3344 815905.9956 795721.5231 813139.0386 831267.3487 852295.2953 1.036714144 0.942897311 0.972952165 0.924178067 0.945686711 0.957304352 0.933621865 0.954057875 0.975327863 1 19.70099384 -8.022100957 3.201007407 0.99987005 0.956034505 0.158361185 0.029334211 0.409074623 10.62858449 0.02744184 0.007308003 9.50E-09 8.022100957 -0.043835545 YKLDEDEDEDDADLS(ph)KYNLDAS(ph)EEEDSNKK ddPTM_HeLa_A486_30min_R1 1 YKLDEDEDEDDADLSKYNLDASEEEDSNKK 30 3 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 YKLDEDEDEDDADLS(1)KYNLDAS(0.999)EEEDS(0.001)NKK 139.01 3.53E-07 196630000 44700 36279 16296 85049 24320 64602 124690 93587 28141 191250 TRUE FALSE FALSE 41566.76083 33404.11991 22606.24762 197998.3701 21269.55883 56632.06207 93491.24316 72279.28309 30580.28454 143359.7552 0.289947209 0.233009047 0.157688939 1.381129383 0.148364922 0.39503459 0.652144272 0.504181128 0.213311501 1 17.12928055 -11.08837221 2.626328983 1.93373934 0.452823095 0.186439196 0.349209133 138642406.1 44664115.43 774416067.1 0.087411565 8.16E-12 11.08837221 -1.480916244 YKLDEDEDEDDADLSKYNLDAS(ph)EEEDSNK ddPTM_HeLa_A486_30min_R1 2 YKLDEDEDEDDADLSKYNLDASEEEDSNK 29 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNK;YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNK ; 385.2 5.58E-188 4842500000 594220 475471 130684 777298 301177 845800 1397120 923950 389728 2021880 TRUE FALSE FALSE 552568.2466 437792.9463 181288.3446 1809589.026 263400.5723 741453.7955 1047545.799 713586.7547 423509.9368 1515588.088 0.364589991 0.288860113 0.119615842 1.193984725 0.173794301 0.489218543 0.691181072 0.470831594 0.279436042 1 20.53144628 -11.56681442 2.155667092 9.999403146 0.460059502 0.238099883 0.293586089 14629179.89 764237.7861 644833336.6 0.072316923 2.71E-12 11.56681442 -9.539343643 YKLDEDEDEDDADLSKYNLDAS(ph)EEEDSNKK ddPTM_HeLa_A485_30min_R1 2 YKLDEDEDEDDADLSKYNLDASEEEDSNKK 30 3 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNKK;YKLDEDEDEDDADLSKYNLDAS(1)EEEDSNKK ; 253.02 1.96E-62 1624810000 554950 197888 89114 1899290 365300 429340 1068020 742580 255877 2514260 TRUE FALSE FALSE 678396.7129 221029.2802 122080.9769 2003043.403 328929.4494 451819.5785 839828.8021 560461.0907 307229.1669 1887501.254 0.359415238 0.117101528 0.06467862 1.061214343 0.174267142 0.239374452 0.444942116 0.296932831 0.162770311 1 20.84804617 -11.10463184 2.542080577 2.239432726 0.328252963 0.361253805 0.269416533 21151377.02 6257494.245 151636574.5 0.066945981 7.86E-12 11.10463184 -1.911179763 YKPESEELTAER ddPTM_HeLa_A485_30min_R1 1 YKPESEELTAER 12 1 H7BZ94;P07237;I3L398;H0Y3Z3 H7BZ94 P4HB Protein disulfide-isomerase 0 0 115.78 0.00093756 27080000 25253 36563 31882 27199 44091 38661 44482 57834 31596 37528 FALSE FALSE TRUE 30870.44273 40838.72479 43676.47852 28684.8125 39701.14523 40685.23018 34978.05732 43650.12082 37937.02738 28172.96025 1.095747215 1.449571661 1.550297808 1.01816821 1.409193243 1.444123366 1.241547108 1.549362241 1.346575832 1 14.78202354 -9.847694456 5.860582269 0.999999938 1.352235991 0.269549036 0.169976685 1.34E-07 2.64E-08 0.159810133 0.038759644 1.42E-10 9.847694456 0.352236053 YKPVCNQVECHPYFNQR ddPTM_HeLa_A485_30min_R1 4 YKPVCNQVECHPYFNQR 17 1 P52895;B4DK69;S4R3P0;Q04828;H0Y804 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;;; ;;; 223.97 2.08E-25 1652228000 689378 878445 764936 705537 920482 985328 1160190 1286320 801518 927666 FALSE FALSE TRUE 842727.7578 981171.5013 1047917.658 744078.6998 828835.5801 1036918.25 912305.9286 970848.0031 962375.3106 696415.9386 1.210092577 1.408887199 1.504729573 1.068440078 1.190144473 1.488935265 1.310001506 1.394063446 1.381897308 1 19.4095897 -10.07023569 4.635771933 0.999985762 1.330493406 0.361479579 0.130987484 91014678.54 2.247300368 15719.27137 0.032663856 8.51E-11 10.07023569 0.330507644 YKPVCNQVECHPYFNQR ddPTM_HeLa_A486_30min_R1 2 YKPVCNQVECHPYFNQR 17 1 P52895;B4DK69;S4R3P0;Q04828;H0Y804 P52895;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ; ; 159.88 9.94E-11 687337000 381562 346221 243679 112965.3 397556 352433 364072 380253 327457 439347 FALSE FALSE TRUE 354816.4742 318785.187 338038.0347 262988.9274 347690.8194 308953.3997 272977.3348 293677.6928 355841.2364 329331.6515 1.07738346 0.967976159 1.026436521 0.798553453 1.055746746 0.938122401 0.82888278 0.891738439 1.080495102 1 18.32918165 -3.989095131 1.177639452 0.939677143 1.212033225 0.148884346 0.088253265 4.92897307 3.803375287 0.026368125 1.913261756 0.000102543 3.989095131 0.272356082 YKPVCNQVECHPYFNR ddPTM_HeLa_A485_30min_R1 3 YKPVCNQVECHPYFNR 16 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ;; ;; 176.83 2.51E-13 713868000 345125 404424 321008 304976 400088 459807 554616 576504 342078 463343 FALSE FALSE TRUE 421896.8656 451717.8688 439762.2175 321636.0666 360253.8339 483881.7835 436117.7608 435115.4901 410729.9169 347840.1173 1.212904563 1.298636489 1.264265378 0.924666393 1.035687996 1.391104014 1.253787988 1.250906576 1.180800881 1 18.40806481 -8.044531129 20.43857985 0.999999996 1.202991685 0.18897391 0.125983532 1634.931688 750391.4271 0.132574267 0.034230529 9.03E-09 8.044531129 0.202991689 YKPVCNQVECHPYFNR ddPTM_HeLa_A486_30min_R1 1 YKPVCNQVECHPYFNR 16 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 90.348 0.0022394 11783000 11713 11094 10431 4132.7 13601 12448 14677 12366 11382 16009 FALSE FALSE TRUE 10891.97919 10214.87104 14470.16255 9621.134455 11895.03576 10912.29232 11004.65936 9550.531748 12368.60092 12000.2422 0.907646613 0.851222073 1.205822542 0.801745023 0.991232973 0.90933934 0.917036438 0.795861583 1.030695941 1 13.5507759 YKSTTS(ph)VSEEDVSSR ddPTM_HeLa_A485_30min_R1 1 YKSTTSVSEEDVSSR 15 1 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 YKS(0.001)T(0.001)T(0.029)S(0.968)VSEEDVSSR 122.53 1.82E-05 162880000 111520 148480 92285 91582 188430 167310 191930 269210 111150 120280 TRUE FALSE FALSE 136327.2393 165843.4444 126425.0618 96584.89276 169669.2476 176070.0929 150922.5876 203185.8254 133456.7855 90296.40959 1.509774751 1.836656022 1.400111725 1.069642671 1.879025405 1.949912446 1.671412942 2.250209353 1.477985515 1 16.462381 YKSTTS(ph)VSEEDVSSR ddPTM_HeLa_A486_30min_R1 2 YKSTTSVSEEDVSSR 15 1 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 YKS(0.007)T(0.005)T(0.018)S(0.969)VSEEDVSSR;YKS(0.001)T(0.003)T(0.066)S(0.929)VS(0.001)EEDVSSR ; 126.22 9.59E-06 155660000 397580 324970 246850 162294 390670 309260 479330 493790 215810 442180 TRUE FALSE FALSE 369711.6951 299218.1937 342436.9309 377828.6339 341668.5257 271106.6455 359396.5642 381364.7964 234516.5846 331455.2499 1.115419639 0.902740849 1.033131715 1.139908431 1.030813438 0.81792835 1.084298904 1.150577028 0.70753619 1 18.33845458 -6.03017697 24.92314414 0.964702177 1.042512315 0.10700858 0.13122546 1932.749241 1596253.608 0.043178793 0.043237746 9.33E-07 6.03017697 0.077810139 YLAEFPEALAR ddPTM_HeLa_A486_30min_R1 2 YLAEFPEALAR 11 0 A0A087WW83;A0A087X0K8;Q6PRD1 A0A087WW83 GPR179 Probable G-protein coupled receptor 179 0 0 ; ; 91.318 0.03378 227990000 219424 544690 609280 192734 876250 584760 681030 703550 531210 432140 FALSE FALSE TRUE 204043.5107 501526.7807 845209.5331 448694.4922 766342.5543 512618.2566 510629.0908 543367.0234 577255.7105 323929.3312 0.629901312 1.548259859 2.609240509 1.385161666 2.365770804 1.582500278 1.576359538 1.677424583 1.782042115 1 18.30531958 -10.14349844 3.448661194 0.999225445 1.712197037 0.13836278 0.50777926 77609113.96 124183692.5 682136.1022 0.126764071 7.19E-11 10.14349844 0.712971592 YLAFLR ddPTM_HeLa_A485_30min_R1 1 YLAFLR 6 0 P40429;M0QYS1 P40429 RPL13A 60S ribosomal protein L13a 0 0 136.94 0.013586 40651000 46792 61823 62972 42939 80272 53691 70805 67384 54876 74172 FALSE FALSE TRUE 57200.71897 69052.66206 86267.96328 45284.64884 72279.83783 56502.17774 55676.93333 50857.96835 65889.10985 55682.28543 1.027269598 1.240119035 1.549289197 0.813268502 1.298075991 1.014724473 0.999903881 0.91335993 1.183304696 1 15.76493081 -5.270051142 24.99717176 1.037249041 1.269015259 0.290417678 0.172045855 803.0695854 2331051.042 0.04760759 0.07186614 5.37E-06 5.270051142 0.231766218 YLAFLR ddPTM_HeLa_A486_30min_R1 1 YLAFLR 6 0 P40429;M0QYS1 P40429 RPL13A 60S ribosomal protein L13a 0 0 110.43 0.031309 41876000 18899 22761 18329 12309 24906 20170 25377 24299 19478 28571 FALSE FALSE TRUE 17574.27769 20957.33547 25426.47967 28655.97406 21782.05724 17681.63047 19027.40619 18766.64814 21166.36872 21416.63563 0.820590031 0.978554047 1.187230343 1.338024074 1.017062512 0.825602619 0.888440487 0.876264996 0.988314369 1 14.38644424 -6.00622674 24.92804337 0.907957652 1.093379139 0.252448408 0.13392333 383.9932994 1537280.506 0.045902418 0.050311756 9.86E-07 6.00622674 0.185421488 YLCEGTES(ph)PYQTGQLHPAIR ddPTM_HeLa_A485_30min_R1 2 YLCEGTESPYQTGQLHPAIR 20 0 H0Y6V4;A0A0G2JQF6;H0Y6P5;Q5TG12;E9PGC5;Q15262;Q15262-2;Q15262-3;Q15262-4 H0Y6V4 PTPRK Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase kappa 1 0 YLCEGT(0.019)ES(0.981)PYQTGQLHPAIR;YLCEGTES(1)PYQTGQLHPAIR ; 193.96 9.27E-20 1210770000 1409390 1370780 1056330 1270910 1608030 1634890 2005160 2043260 1290410 1825740 TRUE FALSE FALSE 1722903.943 1531080.797 1447110.425 1340336.595 1447928.887 1720490.312 1576741.185 1542147.281 1549383.451 1370616.618 1.257028348 1.117074444 1.055809776 0.977907737 1.056406925 1.255267366 1.150388201 1.125148536 1.130428035 1 20.38639365 YLCEGTES(ph)PYQTGQLHPAIR ddPTM_HeLa_A486_30min_R1 2 YLCEGTESPYQTGQLHPAIR 20 0 H0Y6V4;A0A0G2JQF6;H0Y6P5;Q5TG12;E9PGC5;Q15262;Q15262-2;Q15262-3;Q15262-4 H0Y6V4 PTPRK Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase kappa 1 0 YLCEGT(0.159)ES(0.841)PYQTGQLHPAIR;YLCEGT(0.029)ES(0.971)PYQTGQLHPAIR ; 240.3 2.66E-46 1005080000 714050 780870 677270 258046 1038250 783160 897870 800620 774150 913210 TRUE FALSE FALSE 663998.7824 718991.0173 939527.0819 600744.1289 908023.0037 686541.6818 673213.4293 618336.3034 841253.9453 684536.272 0.969997953 1.050332972 1.372501532 0.877592837 1.326479021 1.002929589 0.983459105 0.903292241 1.228939911 1 19.38476746 YLEEDNS(ph)DES(ph)DAEGEHGDGAEEEAPPAGPRPGPEPAGLGR ddPTM_HeLa_A486_30min_R1 2 YLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGR 40 1 Q9H1C4 Q9H1C4 UNC93B1 Protein unc-93 homolog B1 2 0 Y(0.001)LEEDNS(0.999)DES(0.999)DAEGEHGDGAEEEAPPAGPRPGPEPAGLGR;YLEEDNS(1)DES(1)DAEGEHGDGAEEEAPPAGPRPGPEPAGLGR ; 178.56 3.82E-21 807950000 73596 76746 82284 15880.1 110333 65647 74531 77736 78054 79397 TRUE FALSE FALSE 68437.30045 70664.36746 114146.5684 36969.67534 96494.00633 57548.14059 55882.55549 60037.20976 84819.78357 59515.47441 1.149907669 1.187327635 1.917930917 0.621177529 1.62132634 0.966944163 0.938958414 1.008766381 1.425171931 1 15.86097721 YLEES(ph)DEDDLF ddPTM_HeLa_A485_30min_R1 3 YLEESDEDDLF 11 0 P11388;P11388-2;P11388-3;P11388-4;J3QR57 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF ;; 182.53 1.76E-10 1289470000 1582982 2253580 1921439 1782531 2568380 1772288 2353867 2938700 1933334 2602508 TRUE FALSE FALSE 1935110.885 2517116.577 2632259.244 1879906.155 2312663.069 1865082.259 1850944.086 2217979.217 2321336.4 1953750.651 0.990459496 1.288350986 1.347285152 0.962203725 1.183704311 0.954616321 0.947379895 1.135241703 1.188143635 1 20.89781492 -5.269624408 24.96785794 1.055617128 1.216663791 0.255703369 0.121414523 813.3566462 2481087.256 0.03462723 0.052378878 5.37E-06 5.269624408 0.161046663 YLEES(ph)DEDDLF ddPTM_HeLa_A486_30min_R1 5 YLEESDEDDLF 11 0 P11388;P11388-2;P11388-3;P11388-4;J3QR57 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF ;;;; 242.35 7.07E-22 1715843000 2316808 2941701 2387747 912320 2684174 2234047 2888729 2728943 2437140 2570538 TRUE FALSE FALSE 2154411.723 2708589.899 3312346.584 2123927.066 2347499.868 1958432.995 2165938.45 2107622.251 2648393.257 1926858.553 1.11809542 1.405702507 1.719039822 1.102274509 1.2183042 1.016386487 1.124077554 1.093812645 1.374461687 1 20.87781924 -5.340724804 24.99997005 1.135021677 1.413439064 0.372631354 0.167374744 110.4087426 34812.7032 0.047052114 0.069789559 4.56E-06 5.340724804 0.278417387 YLESFLAFTTHPSQFLR ddPTM_HeLa_A485_30min_R1 1 YLESFLAFTTHPSQFLR 17 0 Q9HAV4;H0Y9I3 Q9HAV4 XPO5 Exportin-5 0 0 90.754 0.0014799 3935800 4478.6 5658.3 7319 3416.8 8307.3 4391.3 5853.2 4923.3 6127.7 5775.7 FALSE FALSE TRUE 5474.849119 6319.988964 10026.60267 3603.451132 7480.196043 4621.221678 4602.616004 3715.852956 7357.473183 4335.924284 1.262671754 1.457587483 2.312448745 0.83106874 1.725167589 1.065798518 1.061507467 0.856992123 1.696863852 1 12.08212385 -5.918889045 1.313285982 1.13365516 1.583085321 0.150347296 0.412240117 0.784590066 2.826737673 0.169025279 0.20611046 1.21E-06 5.918889045 0.449430161 YLFIFSVANMR ddPTM_HeLa_A485_30min_R1 4 YLFIFSVANMR 11 0 Q9UKD2 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog 0 0 ;;; ;;; 268.72 7.79E-46 94653000 126652 159583 157050 118737 213756 113607 174491 159650 106437 187617 FALSE FALSE TRUE 154825.3005 178244.8437 215149.3304 125223.3017 192473.7021 119555.2869 137209.5724 120495.5872 127797.9296 140847.5347 1.0992404 1.265516248 1.527533519 0.889069886 1.366539375 0.848827685 0.974170919 0.855503701 0.907349425 1 17.10377479 -6.269753446 24.96212638 0.911701852 1.229212109 0.483405306 0.161428352 531.2374097 1594980.82 0.055096996 0.049389454 5.37E-07 6.269753446 0.317510257 YLFIFSVANMR ddPTM_HeLa_A486_30min_R1 4 YLFIFSVANMR 11 0 Q9UKD2 Q9UKD2 MRTO4 mRNA turnover protein 4 homolog 0 0 ;;; ;;; 162.88 1.70E-05 83873000 112514 118648 103261 56439.1 147050 108916 141931 128717 91794 125277 FALSE FALSE TRUE 104627.3496 109245.9004 143246.4246 131393.0771 128605.6178 95479.0513 106418.3626 99410.94897 99750.77783 93906.82378 1.114161308 1.163343578 1.525410176 1.399185616 1.369502371 1.01674242 1.133233543 1.058612622 1.06223141 1 16.51894238 -6.261586686 24.99987175 1.062769128 1.322374923 0.566343943 0.113591067 11.34700344 1925641.298 0.0424251 0.039782875 5.48E-07 6.261586686 0.259605794 YLGDAFGS(ph)PQTDHGFETDPDPFLLDEPAPR ddPTM_HeLa_A485_30min_R1 1 YLGDAFGSPQTDHGFETDPDPFLLDEPAPR 30 0 Q9H8N7 Q9H8N7 ZNF395 Zinc finger protein 395 1 0 YLGDAFGS(0.981)PQT(0.019)DHGFETDPDPFLLDEPAPR 171.11 1.31E-14 33848000 28097 35607 34853 25581 41123 32890 44964 38583 28001 36547 TRUE FALSE FALSE 34347.08072 39770.92891 47746.57505 26978.42526 37028.64973 34612.06954 35357.07408 29120.45875 33620.54386 27436.5055 1.251875197 1.449562478 1.740257157 0.983303987 1.349612462 1.261533454 1.288687223 1.061376375 1.225394534 1 14.74380912 -6.735195104 0.325173826 0.996367629 1.480524973 0.303071455 0.179107592 2.102048658 0.57716841 0.249853107 0.36632994 1.84E-07 6.735195104 0.484157344 YLGDAFGS(ph)PQTDHGFETDPDPFLLDEPAPR ddPTM_HeLa_A486_30min_R1 1 YLGDAFGSPQTDHGFETDPDPFLLDEPAPR 30 0 Q9H8N7 Q9H8N7 ZNF395 Zinc finger protein 395 1 0 Y(0.002)LGDAFGS(0.853)PQT(0.128)DHGFET(0.017)DPDPFLLDEPAPR 54.326 0.018558 34731000 9740.7 12414 10245 2896.1 12532 12739 12946 13757 12202 12525 TRUE FALSE FALSE 9057.927231 11430.26943 14212.13837 6742.267161 10960.1197 11167.3917 9706.773871 10624.83141 13259.67918 9388.658476 0.964773322 1.217455024 1.513756029 0.718128919 1.167378676 1.189455525 1.033882945 1.131666621 1.412308182 1 13.19670331 -10.08703557 11.75942127 1.000006222 1.147592337 0.043616192 0.210290329 0 0 0.199609687 0.04841246 8.18E-11 10.08703557 0.147586116 YLGGS(ph)MDLSTFDFR ddPTM_HeLa_A485_30min_R1 2 YLGGSMDLSTFDFR 14 0 O95983-2;O95983 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 0 YLGGS(1)MDLSTFDFR;YLGGS(1)MDLSTFDFR ; 119.96 8.97E-05 45133000 30366 46349 41674 40366 62664 53125 69652 83369 64916 85301 TRUE FALSE FALSE 37120.81194 51769.11237 57090.9468 42571.09237 56424.95213 55906.54285 54770.2812 62922.62203 77944.04576 64037.03055 0.579677284 0.808424624 0.891530202 0.66478867 0.881130053 0.873034592 0.85529077 0.982597436 1.217171457 1 15.96661879 -7.068606673 1.018155941 1.103978763 0.765613104 0.604838252 0.105342337 0.383861759 0.726776601 0.087445346 0.039196351 8.54E-08 7.068606673 -0.338365658 YLGGS(ph)MDLSTFDFR ddPTM_HeLa_A486_30min_R1 2 YLGGSMDLSTFDFR 14 0 O95983-2;O95983 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 0 YLGGS(1)MDLSTFDFR;YLGGS(1)MDLSTFDFR ; 121.18 6.64E-05 44279000 41338 48035 35768 18024.2 47959 58243 75649 83798 47151 59694 TRUE FALSE FALSE 38440.41967 44228.53166 49618.3275 41961.24849 41943.53502 51057.57083 56720.82007 64719.0247 51238.08664 44746.23386 0.859076091 0.988430262 1.108882764 0.937760452 0.937364587 1.141047334 1.267611041 1.446356914 1.145081546 1 15.44947864 -6.466583432 3.391676912 1.249775147 0.974614586 0.477809307 0.121410325 0.197446017 4.521023761 0.046269689 0.038436314 3.42E-07 6.466583432 -0.275160561 YLGS(ph)PITTVPK ddPTM_HeLa_A485_30min_R1 3 YLGSPITTVPK 11 0 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;A0A3B3IT42 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 YLGS(0.929)PIT(0.057)T(0.014)VPK;YLGS(0.993)PIT(0.007)TVPK;YLGS(0.999)PIT(0.001)TVPK ;; 176.78 7.27E-09 791630000 584730 623540 509190 624370 773200 633830 749410 846930 539950 777140 TRUE FALSE FALSE 714801.1712 696457.5789 697560.5702 658477.7521 696217.4931 667016.3587 589292.4314 639219.0896 648313.0123 583413.3002 1.225205478 1.19376363 1.195654213 1.128664279 1.193352111 1.143299884 1.010077129 1.095653955 1.1112414 1 19.15415875 -5.266684499 0.185192422 0.97457954 1.368194866 0.723920039 0.038769914 6.11981295 0.31354269 0.131996854 0.596978487 5.41E-06 5.266684499 0.393615325 YLGS(ph)PITTVPK ddPTM_HeLa_A486_30min_R1 4 YLGSPITTVPK 11 0 P30307-4;P30307-3;P30307-2;P30307;D6RJC2;A0A3B3IT42 P30307-4 CDC25C M-phase inducer phosphatase 3 1 0 YLGS(1)PITTVPK;YLGS(1)PITTVPK;YLGS(0.897)PIT(0.086)T(0.016)VPK;YLGS(1)PITTVPK ;;; 190.36 8.06E-11 1272280000 1794950 1655050 1045810 614250 1737520 1665600 1937520 1886480 1294150 1952750 TRUE FALSE FALSE 1669133.274 1523897.81 1450775.64 1430005.042 1519584.04 1460115.207 1452732.003 1456969.686 1406327.964 1463768.69 1.140298522 1.041078294 0.991123563 0.976933755 1.038131264 0.997504057 0.992460088 0.995355138 0.960758331 1 20.48125616 -4.313463023 2.225886708 0.994830429 1.168414542 0.85019544 0.018672492 0.198607576 1.246030152 0.005078459 0.065031687 4.86E-05 4.313463023 0.173584113 YLHDESGLNRR ddPTM_HeLa_A485_30min_R1 3 YLHDESGLNRR 11 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C310;C9JB25;C9J2Q4;C9IY94;C9J938 B5MCX3 2-Sep Septin-2 0 0 ;; ;; 152.7 6.82E-07 429810000 109625 187025 191037 105940 186680 151366 176876 197782 161237 153571 FALSE FALSE TRUE 134010.703 208895.9468 261709.536 111727.2339 168093.4837 159291.2897 139084.9977 149275.6544 193595.7869 115288.576 1.162393602 1.811939692 2.27003876 0.969109324 1.458023766 1.381674536 1.206407456 1.294800054 1.679227845 1 16.81489004 -5.276170887 24.99790803 1.304526468 1.754505649 0.308897692 0.316945948 969.3290442 1644852.953 0.088753545 0.13226966 5.29E-06 5.276170887 0.449979181 YLHDESGLNRR ddPTM_HeLa_A486_30min_R1 1 YLHDESGLNRR 11 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C310;C9JB25;C9J2Q4;C9IY94;C9J938 B5MCX3 2-Sep Septin-2 0 0 174.4 2.36E-08 90835000 61506 71467 69673 14577 93336 70149 73413 80935 69722 69642 FALSE FALSE TRUE 57194.74702 65803.69464 96652.25151 33935.99268 81628.92856 61494.7296 55044.29092 62507.8673 75765.5591 52203.18991 1.095617856 1.260530147 1.851462558 0.650075077 1.563677022 1.177987968 1.054423897 1.19739555 1.451358801 1 15.67185035 -5.250308934 24.98672711 1.178259956 1.388336078 0.124588979 0.294294305 1821.161875 4088317.6 0.077762793 0.133116154 5.62E-06 5.250308934 0.210076122 YLKGDHAGVLK ddPTM_HeLa_A485_30min_R1 1 YLKGDHAGVLK 11 1 Q16658 Q16658 FSCN1 Fascin 0 0 78.096 0.02012 13305000 24301 26358 19583 26085 32835 37315 44626 52775 23734 36289 FALSE FALSE TRUE 29706.67361 29440.33882 26827.56662 27509.9575 29565.83211 39268.7557 35091.29054 39831.8485 28497.1961 27242.82015 1.09044047 1.08066414 0.984757322 1.009805789 1.085270612 1.441435045 1.288093169 1.462104447 1.046044277 1 14.73358844 -6.086713169 7.437151522 1.278515019 1.041006541 0.31969945 0.141475144 0.28032031 21.17444009 0.044598345 0.044719062 8.19E-07 6.086713169 -0.237508479 YLLGDAPVS(ph)PSSQK ddPTM_HeLa_A485_30min_R1 6 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 YLLGDAPVS(0.997)PS(0.003)SQK;YLLGDAPVS(0.999)PS(0.001)SQK;YLLGDAPVS(0.772)PS(0.228)SQK;YLLGDAPVS(0.986)PS(0.013)S(0.001)QK;YLLGDAPVS(0.817)PS(0.183)SQK;YLLGDAPVS(0.996)PS(0.004)SQK ;;;;; 268.9 1.99E-42 4392582000 6888030 6587920 5434690 8148670 9243920 6868180 9978140 9412290 6655510 10572660 TRUE FALSE FALSE 8420248.51 7358319.937 7445207.987 8593811.209 8323562.867 7227787.285 7846228.875 7103911.12 7991209.809 7937090.437 1.060873449 0.927080269 0.93802736 1.082740744 1.048691952 0.910634362 0.988552283 0.89502711 1.00681854 1 22.92017881 -6.259564868 24.9996276 0.955417269 1.006671648 0.16155814 0.057373336 338.3645825 4512668.65 0.019952169 0.019025938 5.50E-07 6.259564868 0.05125438 YLLGDAPVS(ph)PSSQK ddPTM_HeLa_A486_30min_R1 5 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 YLLGDAPVS(0.985)PS(0.013)S(0.001)QK;YLLGDAPVS(0.998)PS(0.002)SQK;YLLGDAPVS(0.998)PS(0.002)SQK;YLLGDAPVS(1)PSSQK;YLLGDAPVS(0.989)PS(0.011)SQK ;;;; 296.85 5.09E-58 4407031000 6922230 6868720 4216710 2620790 6740230 6962490 8226560 8077770 5266510 8306370 TRUE FALSE FALSE 6437017.423 6324417.612 5849533.039 6101331.567 5894807.503 6103528.773 6168187.676 6238638.107 5723015.327 6226400.887 1.033826369 1.015742116 0.939472602 0.979913064 0.946743971 0.980265949 0.990650584 1.001965376 0.919153044 1 22.56996704 -4.604158123 6.461296209 0.970609531 1.029462397 0.427960209 0.025777064 0.168833119 10.5009393 0.006366001 0.017290605 2.49E-05 4.604158123 0.058852866 YLLGDAPVSPS(ph)SQK ddPTM_HeLa_A486_30min_R1 1 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 YLLGDAPVS(0.031)PS(0.829)S(0.14)QK 271.8 8.42E-49 858330000 2300700 2149600 1418200 948040 2254500 2167500 2749800 2704300 1735600 2801800 TRUE FALSE FALSE 2139432.811 1979257.867 1967365.021 2207085.031 1971719.588 1900095.888 2061770.956 2088589.924 1886043.205 2100211.043 1.018675155 0.942409037 0.936746346 1.050887261 0.938819741 0.904716644 0.981697036 0.99446669 0.898025563 1 21.00210288 YLLLHLLGR ddPTM_HeLa_A485_30min_R1 2 YLLLHLLGR 9 0 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;Q9UKI8-3;J3QLK5;Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3 Q9UKI8;Q86UE8-2 TLK1;TLK2 Serine/threonine-protein kinase tousled-like 1;Serine/threonine-protein kinase tousled-like 2 0 0 ; ; 147.34 8.77E-05 172306000 68735 79567 93342 65693 113166 65979 98132 86082 69354 100849 FALSE FALSE TRUE 84024.86362 88871.66851 127873.0901 69281.64225 101898.7957 69433.55842 77165.29654 64970.25453 83272.71165 75709.20029 1.109836893 1.173855597 1.689003313 0.915102022 1.345923551 0.917108596 1.019232752 0.85815534 1.099902143 1 16.20818101 -6.26672472 24.96516754 0.972536529 1.248840283 0.323407252 0.193599236 524.2179219 2476122.014 0.065860617 0.059773286 5.41E-07 6.26672472 0.276303754 YLLLHLLGR ddPTM_HeLa_A486_30min_R1 2 YLLLHLLGR 9 0 Q9UKI8;Q9UKI8-2;Q9UKI8-4;Q9UKI8-5;Q9UKI8-3;J3QLK5;Q86UE8-2;Q86UE8;J3KRK0;Q86UE8-3 Q9UKI8;Q86UE8-2 TLK1;TLK2 Serine/threonine-protein kinase tousled-like 1;Serine/threonine-protein kinase tousled-like 2 0 0 ; ; 146.35 9.69E-05 114936000 52778 55161 45010 18290.5 61455 49377 67196 56109 51630 57159 FALSE FALSE TRUE 49078.53475 50789.84147 62439.07741 42581.20835 53746.74085 43285.36777 50382.85007 43334.20555 56105.32997 42846.01436 1.145463247 1.185404109 1.457290213 0.993819588 1.254416348 1.010254242 1.175905176 1.011394086 1.309464388 1 15.38687339 -5.284705552 24.99744309 1.113238818 1.254987769 0.229017361 0.129687557 1172.474397 1259717.481 0.034570484 0.051311968 5.19E-06 5.284705552 0.141748951 YLLSQS(ph)SPAPLTAAEEELR ddPTM_HeLa_A485_30min_R1 1 YLLSQSSPAPLTAAEEELR 19 0 Q12792-4;Q12792;Q12792-3;F8VS81 Q12792-4 TWF1 Twinfilin-1 1 0 YLLS(0.003)QS(0.977)S(0.02)PAPLT(0.001)AAEEELR 76.151 0.003741 24871000 11459 16363 16652 13828 20445 14942 18806 21348 14498 17607 TRUE FALSE FALSE 14008.01502 18276.51051 22812.26775 14583.38863 18409.42401 15724.34002 14787.94447 16112.36953 17407.61562 13217.89893 1.059776224 1.382709204 1.725861868 1.103306108 1.392764773 1.189624773 1.118781778 1.218981141 1.31697297 1 13.69020525 -6.163167878 1.595668502 1.176189699 1.358207249 0.145694301 0.187369431 0.776305163 3.947312325 0.079753437 0.078079291 6.87E-07 6.163167878 0.182017549 YLLSQSS(ph)PAPLTAAEEELR ddPTM_HeLa_A485_30min_R1 6 YLLSQSSPAPLTAAEEELR 19 0 Q12792-4;Q12792;Q12792-3;F8VS81 Q12792-4 TWF1 Twinfilin-1 1 0 YLLSQS(0.021)S(0.979)PAPLTAAEEELR;YLLSQS(0.006)S(0.994)PAPLTAAEEELR;YLLSQS(0.001)S(0.999)PAPLTAAEEELR;YLLSQS(0.02)S(0.98)PAPLTAAEEELR;YLLSQS(0.002)S(0.998)PAPLTAAEEELR;YLLSQS(0.028)S(0.972)PAPLTAAEEELR ;;;;; 342.02 1.50E-102 610242000 423982 568456 553139 419896 723685 519190 625002 693784 483046 556869 TRUE FALSE FALSE 518295.3332 634931.9843 757768.1341 442833.8552 651632.3804 546373.9856 491465.2169 523632.3862 579988.9014 418051.8067 1.23978733 1.518787801 1.812617771 1.05927985 1.558735951 1.306952815 1.175608403 1.252553817 1.387361308 1 18.67332221 -8.517937794 0.199484535 0.841897713 1.550666723 0.267468509 0.19978003 8.629409682 0.89286423 1.826473449 0.785893138 3.03E-09 8.517937794 0.70876901 YLLSQSS(ph)PAPLTAAEEELR ddPTM_HeLa_A486_30min_R1 6 YLLSQSSPAPLTAAEEELR 19 0 Q12792-4;Q12792;Q12792-3;F8VS81 Q12792-4 TWF1 Twinfilin-1 1 0 YLLSQS(0.079)S(0.921)PAPLTAAEEELR;YLLSQS(0.001)S(0.998)PAPLT(0.001)AAEEELR;YLLSQSS(1)PAPLTAAEEELR;YLLSQS(0.016)S(0.983)PAPLT(0.001)AAEEELR;YLLSQS(0.004)S(0.996)PAPLTAAEEELR;YLLSQSS(1)PAPLTAAEEELR ;;;;; 233.14 6.58E-36 621589000 581919 590741 554405 208218 721276 560420 644487 636297 498825 586608 TRUE FALSE FALSE 541129.4831 543928.5317 769085.4635 484742.0268 630806.8384 491281.0783 483229.5359 491426.0634 542063.5526 439717.5386 1.230629747 1.236995307 1.74904432 1.102394115 1.434572841 1.117265142 1.098954427 1.117594865 1.232753996 1 18.74621755 -6.274511984 23.56130254 1.119765871 1.352741257 0.332608544 0.168014536 449.9405438 810943.1615 0.057984594 0.051505242 5.31E-07 6.274511984 0.232975387 YLNFFTK ddPTM_HeLa_A485_30min_R1 2 YLNFFTK 7 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 0 ; ; 114.93 0.015379 84048000 107334 131475 105275 110837 149299 152884 173180 180962 111920 173269 FALSE FALSE TRUE 131210.078 146849.8576 144220.6034 116891.7447 134434.2673 160888.7698 136178.6782 136580.7858 134381.3174 130076.2271 1.008716819 1.128952314 1.108739134 0.898640338 1.033503741 1.236880662 1.046914423 1.050005745 1.033096673 1 16.98899779 -7.88629768 1.82867597 1.001810319 1.067765358 0.059356311 0.08234343 1.089910646 7.857456994 0.082216753 0.023683979 1.30E-08 7.88629768 0.065955039 YLNFFTK ddPTM_HeLa_A486_30min_R1 1 YLNFFTK 7 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 0 114.93 0.015379 40546000 70668 75235 55727 24255 81366 81038 86402 72121 61205 84338 FALSE FALSE TRUE 65714.53813 69273.1046 77305.98682 56466.86578 71160.31757 71040.35549 64783.30573 55700.62269 66510.29868 63219.21585 1.039470946 1.095760263 1.222824196 0.893191493 1.125612152 1.123714594 1.024740735 0.881071078 1.052058267 1 15.94807552 -6.99766783 13.13009104 0.970517185 1.082824588 0.228459788 0.087538015 0.295935334 1577.150555 0.036777155 0.024125908 1.01E-07 6.99766783 0.112307403 YLPGAITSPDEHILTPDS(ph)SFSKSPESLPGPALEDIAIK ddPTM_HeLa_A485_30min_R1 1 YLPGAITSPDEHILTPDSSFSKSPESLPGPALEDIAIK 38 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 YLPGAITSPDEHILT(0.003)PDS(0.233)S(0.233)FS(0.233)KS(0.233)PES(0.064)LPGPALEDIAIK 67.505 0.00083677 32511000 23791 15927 12024 30379 21049 21774 34223 27653 21765 48177 TRUE FALSE FALSE 29083.22587 17789.5241 16472.17796 32038.52785 18953.28765 22914.05297 26910.97647 20871.05839 26133.03586 36167.36053 0.804129067 0.491866806 0.455443187 0.885840918 0.524043983 0.63355613 0.744068024 0.577068884 0.722558558 1 15.14240069 -13.26029529 0.277597554 2.626504221 0.61641503 0.392233249 0.132494198 142.9854228 2.025188268 132.2288729 0.152753741 5.49E-14 13.26029529 -2.010089191 YLPHSAGR ddPTM_HeLa_A485_30min_R1 2 YLPHSAGR 8 0 M0R0F0;M0R0R2;P46782 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 0 0 ; ; 121.62 0.0011091 34994000 14221.2 22303.9 22688 15444.5 26316 21535.7 22179.3 26322 20433.2 21175 FALSE FALSE TRUE 17384.65688 24912.14709 31081.23533 16288.19393 23695.88664 22663.27595 17440.51137 19866.48823 24533.95582 15896.4622 1.09361798 1.5671504 1.95522972 1.024642699 1.490639008 1.425680486 1.097131623 1.24974274 1.543359492 1 13.9564181 -6.079505025 1.0468231 1.253927827 1.482586549 0.088106571 0.277449195 1.32319003 3.08782187 0.143465614 0.155508873 8.33E-07 6.079505025 0.228658722 YLQAHTQSVYNYHLS(ph)PR ddPTM_HeLa_A485_30min_R1 4 YLQAHTQSVYNYHLSPR 17 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 YLQAHTQSVYNYHLS(1)PR;YLQAHTQSVYNYHLS(1)PR;YLQAHTQSVYNYHLS(1)PR;YLQAHTQSVYNYHLS(1)PR ;;; 241.71 1.53E-42 1874540000 656200 962660 880450 524343 969940 874510 1017020 1091680 714450 773700 TRUE FALSE FALSE 802169.4261 1075234.713 1206165.094 552986.5304 873369.3679 920297.9914 799725.3687 823943.7683 857833.5617 580830.8289 1.381072399 1.851201175 2.076620306 0.952061259 1.503655324 1.584451006 1.376864534 1.418560667 1.476907766 1 19.1477585 -11.54241963 0.09970611 9.67E-10 1.951609851 0.26607116 0.275658374 135.5788155 1.634871991 36.84943135 5.930020834 2.87E-12 11.54241963 1.95160985 YLQAHTQSVYNYHLS(ph)PR ddPTM_HeLa_A486_30min_R1 4 YLQAHTQSVYNYHLSPR 17 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 YLQAHTQSVYNYHLS(1)PR;YLQAHTQSVYNYHLS(1)PR;YLQAHTQSVYNYHLS(1)PR;YLQAHTQSVYNYHLS(1)PR ;;; 215.79 3.62E-34 1291890000 673140 733370 704320 127762 884070 622470 768590 706670 709840 698930 TRUE FALSE FALSE 625956.3621 675255.0903 977051.5663 297436.3927 773181.697 545675.9802 576280.6527 545776.6675 771369.5027 523913.3787 1.194770715 1.288867812 1.86491051 0.567720552 1.475781548 1.041538549 1.099954069 1.041730732 1.47232259 1 18.99896878 -5.248224779 24.99982168 1.114839516 1.433451404 0.231275418 0.290786888 1260.705874 2385041.88 0.075625764 0.129997884 5.65E-06 5.248224779 0.318611889 YLS(ph)FHFK ddPTM_HeLa_A485_30min_R1 2 YLSFHFK 7 0 P53004 P53004 BLVRA Biliverdin reductase A 1 0 YLS(1)FHFK;YLS(1)FHFK ; 81.548 0.0083428 177055000 476980 384830 311370 495260 679370 528890 827680 862400 388790 629510 TRUE FALSE FALSE 583082.5554 429832.5209 426558.7202 522314.7997 611729.5374 556581.8626 650839.4065 650895.0478 466816.5868 472584.7423 1.233815871 0.909535333 0.902607897 1.105229926 1.294433533 1.177739806 1.3771909 1.377308638 0.987794453 1 18.85021353 -5.542634905 5.532110242 1.227568552 1.00382254 0.222542307 0.152715196 0.208362282 19.68205037 0.04441385 0.059605802 2.87E-06 5.542634905 -0.223746013 YLS(ph)FHFK ddPTM_HeLa_A486_30min_R1 2 YLSFHFK 7 0 P53004 P53004 BLVRA Biliverdin reductase A 1 0 YLS(1)FHFK;Y(0.001)LS(0.999)FHFK ; 87.639 0.0053738 266890000 411430 550220 398900 320210 639680 750150 875400 847090 501230 662580 TRUE FALSE FALSE 382590.8816 506618.5633 553364.7629 745465.0625 559445.3696 657604.12 656365.661 654226.0988 544677.02 496665.6553 0.77031878 1.020039453 1.114159509 1.500939424 1.126402367 1.324037837 1.32154429 1.317236438 1.096667374 1 18.92191546 -4.540202458 1.817907075 1.256202287 0.74580583 0.519030314 0.138398827 0.364165188 1.843716973 0.036776584 0.264784155 2.88E-05 4.540202458 -0.510396457 YLS(ph)FT(ph)PPEKDGFPSGTPALNAK ddPTM_HeLa_A485_30min_R1 1 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 2 0 YLS(0.995)FT(0.999)PPEKDGFPS(0.003)GT(0.002)PALNAK 110.83 0.00011641 492130000 171620 114140 77921 202170 186810 148370 256330 224420 137150 285180 TRUE FALSE FALSE 209796.2769 127487.6801 106747.2205 213214.0352 168210.5405 156138.4238 201563.0015 169380.6431 164674.747 214089.8743 0.979944883 0.595486734 0.498609384 0.995909012 0.785700589 0.729312511 0.941487784 0.791166063 0.769185126 1 17.70785704 -13.99999994 0.127155278 1.732747235 0.686211672 0.150920045 0.151106485 272.7357566 2.202098946 50.85259999 1.253500523 1.00E-14 13.99999994 -1.046535562 YLS(ph)FTPPEK ddPTM_HeLa_A485_30min_R1 6 YLSFTPPEK 9 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 YLS(0.999)FT(0.001)PPEK;YLS(0.818)FT(0.182)PPEK;YLS(0.994)FT(0.006)PPEK;YLS(0.918)FT(0.082)PPEK;YLS(0.989)FT(0.011)PPEK;YLS(0.998)FT(0.002)PPEK ;;;;; 160.18 1.40E-05 6880410000 5631900 4254550 3265160 7049540 5046790 3858650 5831070 4450400 3908860 8084730 TRUE FALSE FALSE 6884696.725 4752082.613 4473078.559 7434638.52 4544313.867 4060682.947 4585214.259 3358932.422 4693332.348 6069355.599 1.134337346 0.782963287 0.736993983 1.224946932 0.748730865 0.669046801 0.755469701 0.553424885 0.773283468 1 22.53311192 -5.965862042 24.99993514 0.721130125 0.945710114 0.26979947 0.1720778 238.4578311 174626.6421 0.052077545 0.059050171 1.08E-06 5.965862042 0.224579989 YLS(ph)FTPPEK ddPTM_HeLa_A486_30min_R1 6 YLSFTPPEK 9 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 YLS(0.999)FT(0.001)PPEK;YLS(0.969)FT(0.031)PPEK;YLS(0.998)FT(0.002)PPEK;YLS(0.987)FT(0.013)PPEK;YLS(0.898)FT(0.102)PPEK;YLS(0.989)FT(0.011)PPEK ;;;;; 211.64 2.34E-10 10092480000 9732650 11961070 6034980 3813070 8556980 12418420 13431840 11706700 8981830 11930360 TRUE FALSE FALSE 9050441.494 11013231.25 8371885.878 8877019.662 7483683.778 10886361.6 10071051.56 9041339.965 9760382.256 8942920.202 1.012023063 1.231502798 0.936146772 0.992630982 0.836827748 1.217316196 1.126147985 1.011005327 1.09140885 1 23.09231457 -6.285154897 24.97367677 1.092174244 1.010426312 0.137806027 0.10804988 1864.774339 1963696.776 0.039681107 0.035009747 5.19E-07 6.285154897 -0.081747932 YLS(ph)FTPPEKDGFPS(ph)GTPALNAK ddPTM_HeLa_A485_30min_R1 1 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 2 0 YLS(0.982)FT(0.354)PPEKDGFPS(0.557)GT(0.107)PALNAK 150.95 1.28E-09 497790000 901910 530400 376890 1080500 977510 691760 1226900 1141000 628980 1397300 TRUE FALSE FALSE 1102536.768 592425.6661 516317.2947 1139524.979 880185.6722 727979.4839 964762.7921 861167.961 755210.5167 1048978.825 1.05105722 0.56476418 0.492209454 1.086318381 0.839088122 0.693988731 0.919716174 0.820958384 0.719948295 1 20.00055413 -14 0.240286139 2.157496746 0.773566813 0.090334167 0.182338226 436.901943 4.361230584 247.7378797 0.293249143 1.00E-14 14 -1.383929933 YLS(ph)FTPPEKDGFPS(ph)GTPALNAK ddPTM_HeLa_A486_30min_R1 1 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 2 0 YLS(0.998)FT(0.075)PPEKDGFPS(0.88)GT(0.047)PALNAK 139.19 4.06E-07 474830000 532370 540010 263910 339610 525470 691800 861690 828240 397150 732960 TRUE FALSE FALSE 495053.6122 497217.6409 366103.0198 790629.2429 459560.6528 606452.7497 646086.048 639667.8324 431575.2818 549422.0452 0.901044318 0.904983055 0.666342064 1.439019875 0.836443781 1.103801267 1.175937612 1.164255854 0.785507763 1 19.06755527 -5.221502781 24.99819326 1.074806101 0.8322092 0.27768097 0.183132128 694.846122 434935.9932 0.047607977 0.082457732 6.00E-06 5.221502781 -0.242596901 YLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_HeLa_A485_30min_R1 2 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 YLS(0.999)FT(0.001)PPEKDGFPSGTPALNAK;YLS(0.998)FT(0.002)PPEKDGFPSGTPALNAK ; 216.64 4.36E-36 31335000000 2879900 2345210 1590460 3452500 3576900 3051400 5322900 5040300 2341770 4720500 TRUE FALSE FALSE 3520523.819 2619461.909 2178837.339 3641101.333 3220771.277 3211166.586 4185618.931 3804158.522 2811741.759 3543766.224 0.993441327 0.73917458 0.614836646 1.027466572 0.908855459 0.906145152 1.181121628 1.073478972 0.793433195 1 21.756852 -5.28533871 24.77069924 0.989212686 0.778153196 0.332012917 0.131048585 762.2332823 790022.5275 0.037961628 0.056342208 5.18E-06 5.28533871 -0.21105949 YLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_HeLa_A486_30min_R1 4 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 YLS(0.93)FT(0.07)PPEKDGFPSGTPALNAK;YLS(0.998)FT(0.002)PPEKDGFPSGTPALNAK;YLS(1)FTPPEKDGFPSGTPALNAK;YLS(0.999)FT(0.001)PPEKDGFPSGTPALNAK ;;; 212.38 8.68E-28 38537259000 1123100 1185690 633936 579557 1215160 1388230 1912220 1761960 894680 1590200 TRUE FALSE FALSE 1044376.49 1091731.606 879412.9966 1349237.985 1062743.302 1216964.297 1433762.331 1360800.171 972231.5828 1192003.57 0.87615215 0.915879477 0.737760372 1.131907672 0.891560503 1.020940145 1.202817145 1.141607463 0.81562808 1 20.18495713 -5.264651094 24.99898806 1.036262844 0.850525548 0.345150631 0.116960621 320.4337307 2494161.865 0.033195205 0.051649303 5.44E-06 5.264651094 -0.185737296 YLS(ph)GSGR ddPTM_HeLa_A486_30min_R1 1 YLSGSGR 7 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 YLS(0.891)GS(0.109)GR 71.692 0.01972 190510000 519190 643550 752910 226600 945020 406140 464750 441960 531010 443880 TRUE FALSE FALSE 482797.4621 592552.7542 1044456.916 527536.2517 826486.7796 356034.5761 348464.6344 341335.3559 577038.3743 332729.5588 1.451020654 1.78088402 3.139056594 1.585480573 2.483959593 1.07004192 1.047290886 1.02586424 1.734256422 1 18.34399051 -6.272445956 24.77134823 1.169094663 2.101479195 0.463555405 0.490729446 594.6007051 1338201.598 0.171756375 0.15294068 5.34E-07 6.272445956 0.932384532 YLS(ph)PLGK ddPTM_HeLa_A485_30min_R1 1 YLSPLGK 7 0 A0A075B754;Q96QE3;Q96QE3-2 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 YLS(1)PLGK 125.82 0.0017492 114850000 182580 186110 163030 218720 291210 210210 305020 366170 196410 361900 TRUE FALSE FALSE 223194.2911 207873.9456 223341.5812 230668.1198 262216.1099 221216.2706 239849.9852 276366.2334 235827.6854 271684.9903 0.821518667 0.765128561 0.822060803 0.849027837 0.965147576 0.814238101 0.882823836 1.017230407 0.868018823 1 18.05157534 -4.191666012 0.170446012 1.024727564 0.562222786 0.510694637 0.056779486 16.06138291 0.474602817 0.191337851 1.646011882 6.43E-05 4.191666012 -0.462504778 YLS(ph)PLGK ddPTM_HeLa_A486_30min_R1 2 YLSPLGK 7 0 A0A075B754;Q96QE3;Q96QE3-2 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 YLS(1)PLGK;YLS(1)PLGK ; 125.82 0.0017492 240440000 528310 523570 318890 202189 494620 539690 649250 596010 408600 643790 TRUE FALSE FALSE 491278.1972 482080.4064 442372.7482 470706.2101 432580.1475 473108.535 486800.7829 460311.5338 444017.777 482580.7936 1.018022689 0.998963102 0.916681215 0.975393584 0.896389067 0.980371663 1.008744628 0.953853821 0.92009003 1 18.88041097 -4.577502493 8.658213721 0.956069968 1.013333 0.270693883 0.03479107 0.313242187 45.30235356 0.00888299 0.02369825 2.65E-05 4.577502493 0.057263033 YLSFHFK ddPTM_HeLa_A485_30min_R1 2 YLSFHFK 7 0 P53004 P53004 BLVRA Biliverdin reductase A 0 0 ; ; 138.85 0.00090388 144050000 411320 768760 751200 196340 970340 573980 777960 817500 598040 499450 FALSE FALSE TRUE 502816.715 858659.7947 1029100.14 207065.557 873729.5425 604032.7053 611742.4907 617006.8432 718061.1425 374946.3067 1.341036586 2.290087352 2.744660026 0.552253892 2.330279101 1.610984545 1.631546917 1.645587201 1.915103922 1 18.51632449 -11.30138235 0.230139179 1.48E-13 1.921313966 0.140171033 0.574189328 76.36906874 2.308035545 41.60509639 1.070939774 5.00E-12 11.30138235 1.921313966 YLSFHFK ddPTM_HeLa_A486_30min_R1 2 YLSFHFK 7 0 P53004 P53004 BLVRA Biliverdin reductase A 0 0 ; ; 107.59 0.0053288 150937000 631150 672600 579210 31038 789830 502350 608320 584110 652290 312740 FALSE FALSE TRUE 586909.6443 619300.7264 803495.6238 72258.03257 690762.1565 440375.1645 456111.9018 451120.904 708831.0224 234427.8684 2.503583078 2.641753861 3.427474853 0.308231411 2.946587201 1.878510296 1.945638567 1.924348445 3.023663642 1 17.83878456 YLSFT(ph)PPEKDGFPSGTPALNAK ddPTM_HeLa_A486_30min_R1 2 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 Y(0.262)LS(0.308)FT(0.43)PPEKDGFPSGTPALNAK;Y(0.243)LS(0.348)FT(0.409)PPEKDGFPSGTPALNAK ; 104.33 0.00023795 539320000 248940 255611 130006 127696 264710 302700 373020 374170 197283 359040 TRUE FALSE FALSE 231490.5915 235355.4534 180347.8049 297282.7414 231507.6035 265355.9516 279686.4506 288979.6591 214383.6493 269134.047 0.860131203 0.874491563 0.670104013 1.104589868 0.860194412 0.985962031 1.039208728 1.073738764 0.796568296 1 18.03796539 -5.264478144 24.99996808 0.980828757 0.808867193 0.394400141 0.101215392 271.1296909 2230593.492 0.027489329 0.042811183 5.44E-06 5.264478144 -0.171961564 YLSVPPS(ph)PNISTSES(ph)RSPPEGDTTLFLSR ddPTM_HeLa_A485_30min_R1 2 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 YLS(0.001)VPPS(0.941)PNIS(0.148)T(0.138)S(0.128)ES(0.352)RS(0.29)PPEGDTTLFLSR;YLS(0.01)VPPS(0.943)PNIS(0.114)T(0.108)S(0.103)ES(0.386)RS(0.333)PPEGDT(0.001)T(0.001)LFLS(0.001)R ; 67.871 0.0063428 109123000 43630 58121 61052 49977 74651 54903 73334 80248 45706 61788 TRUE FALSE FALSE 53335.34298 64917.74536 83637.67539 52707.11696 67218.48432 57777.63618 57665.59182 60567.05218 54878.77496 46385.38872 1.149830678 1.399530049 1.803103902 1.13628706 1.44913056 1.245599914 1.243184404 1.305735574 1.183104777 1 15.50138281 -7.906401802 0.420418203 0.985824242 1.415250717 0.29121999 0.177354091 1.557419502 0.745933909 0.248575575 0.138936395 1.24E-08 7.906401802 0.429426475 YLSVPPS(ph)PNISTSES(ph)RSPPEGDTTLFLSR ddPTM_HeLa_A486_30min_R1 2 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 YLSVPPS(0.964)PNIS(0.035)T(0.034)S(0.033)ES(0.56)RS(0.371)PPEGDT(0.002)T(0.002)LFLSR;YLSVPPS(0.528)PNIS(0.23)T(0.237)S(0.242)ES(0.501)RS(0.261)PPEGDTTLFLSR ; 94.642 0.0013444 180744000 75247 72514 62883 36468 89227 68895 90473 75402 62701 70305 TRUE FALSE FALSE 69972.57388 66767.72655 87232.98167 84899.34699 78035.31765 60395.43537 67835.69847 58234.61061 68135.97316 52700.17039 1.327748532 1.266935686 1.655269443 1.610988093 1.480741278 1.146019736 1.287200743 1.105017501 1.292898536 1 15.68552001 -6.257941998 24.52233111 1.18035173 1.475457922 0.558353608 0.133974733 197.9394235 1387880.642 0.047608758 0.045788841 5.52E-07 6.257941998 0.295106191 YLSVPPSPNISTSES(ph)RSPPEGDTTLFLSR ddPTM_HeLa_A486_30min_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 YLSVPPS(0.001)PNIS(0.021)T(0.021)S(0.021)ES(0.556)RS(0.38)PPEGDTTLFLSR 156.9 3.40E-10 426630000 103430 114740 108260 31963 143350 110510 128700 134920 111570 117910 TRUE FALSE FALSE 96180.09111 105647.5845 150181.1713 74411.47932 125369.7063 96876.39978 96497.89875 104201.6613 121240.9774 88384.56853 1.088200041 1.195317082 1.699178644 0.841905782 1.418456959 1.096078211 1.091795778 1.178957628 1.371743727 1 16.43150688 -5.277897214 24.99920399 1.157587654 1.314340524 0.131470784 0.214564618 1888.03772 2867895.928 0.058999065 0.08779391 5.27E-06 5.277897214 0.15675287 YLSVPPSPNISTSESRS(ph)PPEGDTTLFLSR ddPTM_HeLa_A485_30min_R1 3 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 YLSVPPS(0.001)PNIS(0.001)T(0.001)S(0.002)ES(0.021)RS(0.973)PPEGDTT(0.002)LFLS(0.001)R;YLSVPPS(0.001)PNIS(0.038)T(0.038)S(0.038)ES(0.19)RS(0.695)PPEGDTTLFLSR;YLSVPPSPNIS(0.005)T(0.005)S(0.005)ES(0.214)RS(0.772)PPEGDTTLFLSR ;; 154.99 5.54E-10 1323080000 178506 257027 262840 185309 315685 271563 352476 354337 218742 276497 TRUE FALSE FALSE 218214.0439 287084.0718 360075.4537 195431.9614 284254.293 285781.6188 277166.6231 267435.2952 262641.513 207571.3865 1.051272276 1.383061879 1.734706598 0.941516867 1.369429081 1.376787156 1.335283383 1.288401546 1.265306926 1 17.66324806 -8.450339144 1.341183323 1.000034967 1.321382704 0.176167491 0.199493807 3.374868198 8.142215565 0.188826947 0.055988317 3.55E-09 8.450339144 0.321347737 YLT(ph)VAAVFR ddPTM_HeLa_A485_30min_R1 1 YLTVAAVFR 9 0 Q5JP53;P07437;Q5ST81;P68371;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 1 0 YLT(1)VAAVFR 105.2 0.0034046 0 20594 25579 17809 27114 29684 26567 34216 36916 19582 34117 TRUE FALSE FALSE 25175.06425 28570.24154 24397.29019 28595.16916 26728.55673 27958.00704 26905.47208 27862.29312 23511.92778 25612.25978 0.982930224 1.115490854 0.952562968 1.116464124 1.043584477 1.091586892 1.050491925 1.087849856 0.917995053 1 14.64454693 -7.758009443 24.99997163 0.958997517 1.05643551 0.336907129 0.053915561 84.84252178 618434.2608 0.036498846 0.012525617 1.75E-08 7.758009443 0.097437992 YLTAEAFGFK ddPTM_HeLa_A485_30min_R1 1 YLTAEAFGFK 10 0 Q16658 Q16658 FSCN1 Fascin 0 0 206.78 2.54E-14 27858000 55234 56185 48390 54079 76119 62946 86438 79877 54324 87074 FALSE FALSE TRUE 67520.61274 62755.34701 66291.47468 57033.19883 68540.32509 66241.75523 67969.81517 60287.04051 65226.32851 65368.05428 1.032929823 0.960030824 1.014126478 0.872493444 1.048529375 1.013365871 1.039801718 0.92227069 0.99783188 1 15.99629813 -4.239570152 22.72251112 0.984873078 1.032929998 0.071731865 0.051282564 4564.781278 4742632.64 0.012558123 0.49470221 5.76E-05 4.239570152 0.04805692 YLTAEAFGFK ddPTM_HeLa_A486_30min_R1 2 YLTAEAFGFK 10 0 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 211.48 1.64E-15 63743000 66675 81213 57178 25847.3 91648 85672 90004 91308 71712 96872 FALSE FALSE TRUE 62001.42681 74777.38611 79318.85288 60173.82065 80152.65326 75102.65969 67484.04723 70519.16164 77928.0539 72614.62067 0.853842191 1.029784159 1.092326203 0.828673621 1.103808744 1.03426361 0.929345173 0.971142739 1.073173049 1 16.14797244 -4.255441781 24.42488528 1.004597251 0.853842099 0.254944089 0.07842751 696.3579905 2835766.83 0.01902962 0.165987878 5.55E-05 4.255441781 -0.150755152 YLTNQK(ac)NSNSK ddPTM_HeLa_A485_30min_R1 2 YLTNQKNSNSK 11 1 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 1 ; YLTNQK(1)NSNSK;YLTNQK(1)NSNSK 338.01 5.32E-87 332600000 207314 259110 182699 206309 271680 249860 312710 346030 219350 294640 FALSE TRUE FALSE 253430.2841 289410.6605 250286.9628 217579.1383 244630.5853 262942.2832 245896.9539 261165.5999 263371.533 221191.6704 1.145749673 1.308415728 1.131538825 0.983667865 1.105966535 1.188753097 1.111691744 1.180720772 1.19069372 1 17.75493753 -4.915170017 9.219436118 1.114923963 1.226375493 0.266236556 0.076995885 0.402309296 39.82726572 0.020421209 0.042663688 1.22E-05 4.915170017 0.111451529 YLTNQK(ac)NSNSK ddPTM_HeLa_A486_30min_R1 2 YLTNQKNSNSK 11 1 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 1 ; YLTNQK(1)NSNSK;YLTNQK(1)NSNSK 325.1 2.60E-86 241450000 265360 243390 168696 83133 249050 256060 278880 281580 203055 289610 FALSE TRUE FALSE 246759.6343 224102.89 234019.609 193537.8253 217811.8267 224469.9206 209101.2743 217470.3808 220655.9709 217089.771 1.136670941 1.032305157 1.077985425 0.891510569 1.00332607 1.033995843 0.963201874 1.001753237 1.016427305 1 17.72793222 -4.279075827 1.270903713 0.991784776 1.19022702 0.487764714 0.044059618 1.188839714 1.705352487 0.013085763 0.306490216 5.26E-05 4.279075827 0.198442244 YLTNQK(ac)NSNSK(ac)NDR ddPTM_HeLa_A486_30min_R1 2 YLTNQKNSNSKNDR 14 2 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 2 ; YLTNQK(1)NSNSK(1)NDR;YLTNQK(1)NSNSK(1)NDR 117.07 0.00050011 39279000 6521.5 8510.6 6345.5 1465.9 7094.9 7059.4 6733.7 6350.7 7387.1 7733.1 FALSE TRUE FALSE 6064.376527 7836.189061 8802.647538 3412.689282 6204.991485 6188.483003 5048.857038 4904.784245 8027.419776 5796.681426 1.046180751 1.351840559 1.518566727 0.588731557 1.070438589 1.067590669 0.870990946 0.846136588 1.384830248 1 12.50101148 -5.241434937 24.99991047 0.972554653 1.310160442 0.323570526 0.218588711 961.0595637 1201051.868 0.058226541 0.100682042 5.74E-06 5.241434937 0.337605789 YLTNQK(ac)NSNSK(ac)NDRR ddPTM_HeLa_A485_30min_R1 2 YLTNQKNSNSKNDRR 15 3 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 2 ; YLTNQK(1)NSNSK(1)NDRR;YLTNQK(1)NSNSK(1)NDRR 217.48 1.06E-22 274120000 42980 71356 66874 45304 74088 57832 72850 85761 51983 61308 FALSE TRUE FALSE 52540.75272 79700.46349 91613.47546 47778.8428 66711.53858 60859.99409 57285.00237 64727.98028 62415.51128 46025.04389 1.14156877 1.731675991 1.990513593 1.038105318 1.449461705 1.322323434 1.244648512 1.406364336 1.356120625 1 15.49013148 -5.272876404 24.99855144 1.286411252 1.632295127 0.320262262 0.239074081 874.5895526 1911638.417 0.066502606 0.099609246 5.33E-06 5.272876404 0.345883876 YLTNQK(ac)NSNSK(ac)NDRR ddPTM_HeLa_A486_30min_R1 2 YLTNQKNSNSKNDRR 15 3 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 2 ; YLTNQK(1)NSNSK(1)NDRR;YLTNQK(1)NSNSK(1)NDRR 198.87 3.08E-16 151156000 58941 57604 51395 16686.6 71524 47238 60813 63288 45339 61066 FALSE TRUE FALSE 54809.54027 53039.24925 71296.52041 38847.24809 62552.79299 41410.25584 45596.94419 48878.70397 49269.02103 45774.67613 1.19737691 1.158702884 1.557553793 0.848662435 1.366537096 0.904654262 0.996117243 1.067811028 1.076337949 1 15.48226206 -5.699643208 1.26995981 1.02810548 1.262978949 0.221124786 0.179575544 0.682250219 2.3034555 0.067928843 0.103887278 2.00E-06 5.699643208 0.234873469 YLTVAAVFR ddPTM_HeLa_A485_30min_R1 4 YLTVAAVFR 9 0 Q5JP53;P07437;Q5ST81;P68371;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ;;; ;;; 241.43 8.30E-24 2396606000 1417336 1802423 1782510 1441997 2072034 1723084 2277141 2589791 1277290 2013703 FALSE FALSE TRUE 1732617.503 2013200.691 2441934.625 1520769.645 1865735.02 1813302.014 1790611.223 1954640.697 1533630.387 1511723.902 1.146120334 1.331725118 1.615331095 1.005983727 1.234177099 1.199492852 1.184482974 1.292987889 1.014491062 1 20.52776324 -7.61645994 0.300387009 0.965969424 1.336332167 0.249751618 0.153682051 2.386665693 0.771266957 0.331661896 0.268465548 2.42E-08 7.61645994 0.370362743 YLTVAAVFR ddPTM_HeLa_A486_30min_R1 4 YLTVAAVFR 9 0 Q5JP53;P07437;Q5ST81;P68371;P04350 Q5JP53;P68371;P04350 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ;;; ;;; 261.87 1.95E-32 2690810000 1124907 1313908 1342656 512082 2062110 1348842 1672521 1534199 1300855 1460525 FALSE FALSE TRUE 1046056.828 1209789.145 1862568.361 1192152.775 1803460.935 1182435.588 1254038.556 1184895.379 1413614.159 1094800.034 0.955477527 1.105032068 1.701286357 1.088922852 1.647297114 1.080047088 1.14544987 1.082293883 1.291207632 1 20.06223595 YLTVATVFR ddPTM_HeLa_A485_30min_R1 2 YLTVATVFR 9 0 A0A0B4J269;Q13509;Q13509-2;Q9BUF5;K7ESM5 A0A0B4J269;Q9BUF5 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain 0 0 ; ; 178.65 7.92E-08 93617000 79967 88303 85261 78475 121812 99129 129401 141517 70669 105131 FALSE FALSE TRUE 97755.38327 98629.26772 116802.5919 82761.89054 109683.9696 104319.2412 101753.4192 106809.7339 84851.62009 78923.77649 1.238604988 1.2496775 1.47994175 1.048630644 1.38974558 1.321772041 1.289261915 1.353327712 1.075108464 1 16.26817237 -7.87741736 4.64570208 1.004577525 1.296030831 0.488802611 0.106828537 0.160944636 5.340077901 0.097284463 0.025548401 1.33E-08 7.87741736 0.291453306 YLTVATVFR ddPTM_HeLa_A486_30min_R1 2 YLTVATVFR 9 0 A0A0B4J269;Q13509;Q13509-2;Q9BUF5;K7ESM5 A0A0B4J269;Q9BUF5 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain 0 0 ; ; 141.93 0.00060069 109991000 76040 92788 89440 33871 112180 106833 114385 101529 100125 103541 FALSE FALSE TRUE 70709.98867 85435.14095 124073.5633 78853.39975 98109.33836 93653.03066 85764.66316 78413.06306 108803.9156 77613.65966 0.911050825 1.100774546 1.598604728 1.01597322 1.264073087 1.206656548 1.105020219 1.010299777 1.401865549 1 16.24402296 -6.754357945 24.44747214 1.130154706 1.194128385 0.015255175 0.198746426 676.6894574 2336168.888 0.077003473 0.058325511 1.76E-07 6.754357945 0.063973679 YLVVLYYNANR ddPTM_HeLa_A485_30min_R1 2 YLVVLYYNANR 11 0 Q9Y3B4 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 0 0 ; ; 272.5 6.07E-46 300650000 233250 277830 278150 209210 336580 247720 354380 367010 167097 307280 FALSE FALSE TRUE 285135.6578 310319.8017 381049.2598 220638.6126 303068.9134 260690.2362 278663.818 277000.2221 200631.8352 230680.7511 1.236061771 1.34523492 1.651846797 0.956467375 1.313802352 1.13009098 1.208006375 1.200794695 0.869738087 1 17.8155381 -6.63080932 0.450875067 0.967015483 1.383744049 0.353260442 0.170988677 1.284429827 0.576484226 0.173081072 0.191944652 2.34E-07 6.63080932 0.416728566 YLVVLYYNANR ddPTM_HeLa_A486_30min_R1 2 YLVVLYYNANR 11 0 Q9Y3B4 Q9Y3B4 SF3B6 Splicing factor 3B subunit 6 0 0 ; ; 291.84 6.16E-58 222131000 173328 215633 211260 92567 258810 204290 261570 259190 173686 222920 FALSE FALSE TRUE 161178.6023 198545.4558 293065.5297 215500.6541 226347.6365 179086.7769 196122.4194 200178.0951 188741.2423 167099.381 0.964567321 1.188187859 1.753839709 1.289655609 1.35456897 1.071738122 1.173687288 1.197958328 1.12951491 1 17.35034686 -6.255640728 24.04418476 1.130646345 1.326896765 0.204348959 0.190231198 500.753483 2076381.827 0.067001876 0.065177116 5.55E-07 6.255640728 0.19625042 YMACCLLYR ddPTM_HeLa_A485_30min_R1 3 YMACCLLYR 9 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;A6NHL2;A6NHL2-2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ;; ;; 143.37 0.00016609 214759000 176307 328789 367110 146740 529002 194778 278339 275267 254629 263372 FALSE FALSE TRUE 215525.8839 367238.0135 502919.2657 154756.0346 476332.7034 204976.2749 218869.5988 207757.3366 305730.7047 197718.2074 1.090065941 1.857380857 2.543616353 0.782710084 2.409149414 1.036709151 1.106977459 1.050774936 1.546295148 1 17.59308621 -6.328216553 24.99985192 1.148750794 1.735145435 0.246208816 0.514798645 275.1031823 102991.2365 0.17475851 0.1541198 4.70E-07 6.328216553 0.58639464 YMACCLLYR ddPTM_HeLa_A486_30min_R1 2 YMACCLLYR 9 0 F5H5D3;Q9BQE3;Q71U36;Q71U36-2;A0A1W2PQM2;A6NHL2;A6NHL2-2;P68363;P68363-2;P68366-2;P68366 F5H5D3;P68363;P68366-2 TUBA1C;TUBA1A;TUBAL3;TUBA1B;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 132.72 0.00053758 84610000 134409 90338 82927 27066 119140 97802 116596 136711 98344 139378 FALSE FALSE TRUE 124987.6232 83179.28787 115038.5553 63011.01584 104196.3503 85736.18362 87422.44757 105584.8897 106868.5371 104476.8416 1.196318928 0.796150483 1.101091433 0.603109884 0.997315277 0.820623808 0.836763882 1.010605681 1.022892111 1 16.67282366 -7.287213643 21.51369688 1.012561897 0.898938953 0.082156474 0.157266027 332.4452565 277483.505 0.081027479 0.038971858 5.16E-08 7.287213643 -0.113622944 YMAENPTAGVVQEEEEDNLEYDS(ph)DGNPIAPTKK ddPTM_HeLa_A485_30min_R1 2 YMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKK 33 1 J3KRE3;A0A0A0MSJ0;Q86XP3-2;Q86XP3 J3KRE3 DDX42 ATP-dependent RNA helicase DDX42 1 0 YMAENPTAGVVQEEEEDNLEYDS(1)DGNPIAPTKK;YMAENPTAGVVQEEEEDNLEY(0.001)DS(0.999)DGNPIAPTKK ; 231.33 8.09E-40 689530000 171545 172825 109745 253884 215596 217041 325867 324122 162638 317158 TRUE FALSE FALSE 209704.5934 193035.3804 150344.2424 267753.0401 194130.5052 228404.9312 256242.8534 244630.5713 195277.9548 238096.3475 0.880755189 0.81074482 0.631442876 1.124557529 0.815344323 0.959296241 1.07621497 1.027443612 0.820163589 1 17.86118596 -5.260505427 24.99928393 0.972806662 0.777957355 0.414924276 0.109010111 84.73740407 2268150.34 0.029973456 0.048330759 5.49E-06 5.260505427 -0.194849307 YMAENPTAGVVQEEEEDNLEYDS(ph)DGNPIAPTKK ddPTM_HeLa_A486_30min_R1 2 YMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKK 33 1 J3KRE3;A0A0A0MSJ0;Q86XP3-2;Q86XP3 J3KRE3 DDX42 ATP-dependent RNA helicase DDX42 1 0 YMAENPTAGVVQEEEEDNLEY(0.002)DS(0.998)DGNPIAPTKK;YMAENPTAGVVQEEEEDNLEYDS(1)DGNPIAPTKK ; 146.76 1.53E-09 1154770000 325870 318740 145769 171151 289430 305290 425680 374260 217859 458430 TRUE FALSE FALSE 303028.1958 293481.8816 202214.6606 398448.1775 253126.9906 267626.4238 319170.3616 289049.168 236743.1935 343636.1441 0.881828646 0.854048349 0.588455738 1.159506019 0.736613406 0.778807551 0.928803233 0.84114891 0.688935659 1 18.39052226 -11.35062329 2.345828369 2.12164493 0.83123017 0.110875896 0.145379646 22111400.8 2305430.051 132114259.2 0.036424948 4.46E-12 11.35062329 -1.290414759 YMEDS(ph)TYYK ddPTM_HeLa_A485_30min_R1 2 YMEDSTYYK 9 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-4;Q05397-3 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 YMEDS(0.701)T(0.221)Y(0.077)YK;YMEDS(0.628)T(0.252)Y(0.118)Y(0.002)K ; 132.57 0.00021847 870720000 995960 968860 753070 1290660 1223440 1010090 1617070 1553690 915240 1971020 TRUE FALSE FALSE 1217507.866 1082159.749 1031661.931 1361165.488 1101630.018 1062976.751 1271569.784 1172645.091 1098920.273 1479680.988 0.822817807 0.73134666 0.697219157 0.919904695 0.744505084 0.718382381 0.859354006 0.792498586 0.74267378 1 20.49685474 -10.44881417 2.991327016 1.004916576 0.780862265 0.498019119 0.065970697 20978903.09 24856653.86 865959.672 0.016754577 3.56E-11 10.44881417 -0.224054311 YMEDS(ph)TYYK ddPTM_HeLa_A486_30min_R1 1 YMEDSTYYK 9 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-4;Q05397-3 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 YMEDS(0.543)T(0.179)Y(0.276)Y(0.001)K 106.36 0.0011162 466860000 647970 640050 343240 282370 604360 647060 794220 821360 466970 876820 TRUE FALSE FALSE 602550.6491 589330.107 476151.7203 657371.6302 528555.5334 567232.316 595497.7556 634354.2582 507447.3356 657258.5649 0.91676348 0.896648805 0.724451146 1.000172026 0.80418204 0.863027652 0.906032705 0.965151756 0.772066524 1 19.32610151 -11.14160189 2.252428489 1.263259591 0.873681015 0.18376068 0.080830557 9979000.483 2153249.066 13442722.44 0.01911061 7.22E-12 11.14160189 -0.389578576 YMEDSTY(ph)YK ddPTM_HeLa_A485_30min_R1 1 YMEDSTYYK 9 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-4;Q05397-3 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 YMEDS(0.015)T(0.015)Y(0.969)YK 158.07 2.11E-05 84830000 115730 113970 104520 166270 152170 116050 186580 181110 117830 218110 TRUE FALSE FALSE 141473.7392 127297.8001 143186.2974 175352.9091 137019.4205 122126.1986 146715.6588 136692.4885 141477.4002 163739.191 0.864018799 0.777442464 0.87447786 1.070928151 0.836815057 0.74585808 0.896032635 0.834818394 0.864041158 1 17.32104015 -8.10523877 18.60988516 1 0.862549667 0.202095227 0.081840453 16076.45818 2842885.958 0.08346184 0.021549755 7.85E-09 8.10523877 -0.137450334 YMEDSTY(ph)YK ddPTM_HeLa_A486_30min_R1 1 YMEDSTYYK 9 0 Q05397-5;Q05397;Q05397-7;H0YBP1;E7ESA6;E9PEI4;Q05397-2;H0YBZ1;H0YB16;Q05397-4;Q05397-3 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 YMEDS(0.236)T(0.236)Y(0.523)Y(0.006)K 125.31 0.00012832 0 146820 149870 95748 86657 166660 171450 216170 226390 133770 222580 TRUE FALSE FALSE 136528.6762 137993.7554 132824.1898 201741.8754 145755.9488 150298.2422 162081.9796 174845.9391 145365.2913 166844.5192 0.818298838 0.827079942 0.796095613 1.209160938 0.873603457 0.900828165 0.971455223 1.047957343 0.871262011 1 17.34814477 YMFSRPFR ddPTM_HeLa_A485_30min_R1 2 YMFSRPFR 8 1 M0R181;P46778;G3V1B3;M0R3I5 M0R181 RPL21 60S ribosomal protein L21 0 0 ; ; 143.12 0.00022647 55945000 33753 42449 45958 34605 52254 40249 49458 46116 41700 50631 FALSE FALSE TRUE 41261.2384 47413.04129 62959.77667 36495.38353 47051.40829 42356.3754 38890.89427 34805.97869 50068.8075 38009.62349 1.085547149 1.24739571 1.656416741 0.960161669 1.237881462 1.114359247 1.023185464 0.915714903 1.3172666 1 15.21407711 -5.310615417 24.99999756 1.083202052 1.321549491 0.296883349 0.175137207 472.0553344 239981.4229 0.049076674 0.072792613 4.89E-06 5.310615417 0.238347438 YMFSRPFRK ddPTM_HeLa_A485_30min_R1 2 YMFSRPFRK 9 2 M0R181;P46778;G3V1B3;M0R3I5 M0R181 RPL21 60S ribosomal protein L21 0 0 ; ; 107.69 0.0036108 85326000 72271 147415 95460 45741 137891 137494 189755 278120 88023 81478 FALSE FALSE TRUE 88347.43462 164653.9019 130774.6264 48239.71501 124162.0879 144692.9732 149212.2941 209910.6339 105688.4087 61167.03409 1.444363552 2.691873235 2.137991949 0.788655453 2.029885701 2.365538486 2.439423397 3.431760867 1.727865512 1 15.9004667 -6.12050657 4.87442362 2.355977713 1.811322327 0.044025321 0.739800023 0.556585888 19.85153377 0.246783306 0.248286807 7.58E-07 6.12050657 -0.544655386 YMLS(ph)ST(ph)VS(ph)SKILR ddPTM_HeLa_A485_30min_R1 1 YMLSSTVSSKILR 13 1 H0Y921 H0Y921 PGM2 3 0 Y(0.004)MLS(0.95)S(0.061)T(0.679)VS(0.678)S(0.628)KILR 53.169 0.031673 150360000 35220 74978 66277 32999 68635 68884 86243 116040 50617 53444 TRUE FALSE FALSE 43054.56749 83746.02488 90795.62032 34801.65181 61801.45841 72490.65973 67816.47851 87581.00806 60775.36761 40121.39436 1.073107457 2.087315912 2.263022553 0.867408832 1.54036168 1.806783161 1.690282194 2.182900406 1.514787025 1 15.29208413 -4.233583857 23.29298503 1.69404198 1.073105194 0.134026818 0.44168736 7690.288868 6430418.533 0.109661655 8.717442419 5.84E-05 4.233583857 -0.620936787 YMLTHQELAS(ph)DGEIETK ddPTM_HeLa_A485_30min_R1 5 YMLTHQELASDGEIETK 17 0 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 YMLTHQELAS(0.999)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK ;;;; 277.05 1.39E-59 4851975000 3808554 3770844 2758886 4610305 4519900 4146621 5761292 6554668 3357440 8241596 TRUE FALSE FALSE 4655753.698 4211811.404 3779512.738 4862154.288 4069882.886 4363731.664 4530344.899 4947125.396 4031247.412 6187117.793 0.752491524 0.680738842 0.610868075 0.785851256 0.657799483 0.705293128 0.732222183 0.799584809 0.65155498 1 22.56083607 -14 0.303458174 3.475712507 0.694329607 0.692783541 0.057969576 150.7835196 1.38871428 237.7639283 0.055507024 1.00E-14 14 -2.7813829 YMLTHQELAS(ph)DGEIETK ddPTM_HeLa_A486_30min_R1 6 YMLTHQELASDGEIETK 17 0 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(1)DGEIETK ;;;;; 361.35 3.55E-106 5403800000 5797880 5396820 3257790 2467520 5111050 5545070 6942070 6728140 4495090 7465870 TRUE FALSE FALSE 5391478.552 4969156.328 4519293.535 5744511.262 4469974.45 4860975.642 5205090.66 5196289.396 4884728.02 5596367.557 0.96338893 0.887925298 0.807540514 1.026471404 0.798727818 0.868594779 0.930083774 0.9285111 0.872839028 1 22.41605929 -10.588967 2.90670534 1.006571313 0.897061842 0.180059622 0.065107499 43707066.48 42843051.91 2189006.743 0.015376524 2.58E-11 10.588967 -0.109509471 YMNSDTTS(ph)PELR ddPTM_HeLa_A485_30min_R1 3 YMNSDTTSPELR 12 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 YMNSDTTS(1)PELR;YMNSDTTS(1)PELR;YMNSDTT(0.001)S(0.999)PELR ;; 258.42 2.44E-33 4547900000 1990590 2830030 2819440 2070400 3076000 2532370 2968070 3255090 2257690 2742130 TRUE FALSE FALSE 2433389.878 3160977.391 3862468.183 2183500.709 2769742.64 2664960.977 2333917.598 2456774.074 2710787.674 2058567.456 1.182079252 1.535522861 1.876289344 1.060689414 1.345470915 1.294570634 1.133758134 1.193438702 1.316832084 1 20.97320929 -5.286007814 24.99927311 1.208396586 1.531719844 0.406518918 0.187084488 768.4793677 781953.9242 0.052647755 0.078127891 5.18E-06 5.286007814 0.323323259 YMNSDTTS(ph)PELR ddPTM_HeLa_A486_30min_R1 3 YMNSDTTSPELR 12 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 YMNSDTTS(1)PELR;YMNSDTT(0.002)S(0.998)PELR;YMNSDTT(0.001)S(0.999)PELR ;; 258.39 2.45E-33 4049500000 3542180 3683330 2958270 976270 3776680 3182120 3540480 3623000 3038670 3484390 TRUE FALSE FALSE 3293891.474 3391449.516 4103791.369 2272805.898 3302973.578 2789542.388 2654614.457 2798121.99 3302064.362 2611876.064 1.261120893 1.298472605 1.571204478 0.870181372 1.264598127 1.068022494 1.016363101 1.071307336 1.264250018 1 21.31665501 -5.259645889 24.99481128 1.086852436 1.369086643 0.506683442 0.134392234 134.0748525 1868507.594 0.03604264 0.058530731 5.50E-06 5.259645889 0.282234207 YMQFS(ph)NSPR ddPTM_HeLa_A486_30min_R1 1 YMQFSNSPR 9 0 E9PM72 E9PM72 MED17 1 0 YMQFS(0.973)NS(0.027)PR 82.831 0.0044811 0 120070 216670 263300 20048 248940 112760 87548 115110 162840 51716 TRUE FALSE FALSE 111653.713 199500.2801 365256.8114 46672.75717 217715.6239 98848.81766 65642.56441 88901.96583 176955.1023 38765.97699 2.88019861 5.146272469 9.422097412 1.203961845 5.616152122 2.549885888 1.693303497 2.293298731 4.564701217 1 15.2425034 -5.91905936 1.294122915 2.475961889 5.359457895 0.223566135 2.171549342 0.663872628 2.325935463 0.912131997 1.115048813 1.20E-06 5.91905936 2.883496006 YMQFSNS(ph)PR ddPTM_HeLa_A485_30min_R1 1 YMQFSNSPR 9 0 E9PM72 E9PM72 MED17 1 0 YMQFS(0.008)NS(0.992)PR 86.898 0.0040739 317880000 34581 40915 43397 38215 47213 37516 35943 53072 32175 66134 TRUE FALSE FALSE 42273.42415 45699.65334 59451.3562 40302.58868 42512.30795 39480.27975 28263.48442 40056.00879 38632.22737 49648.01091 0.851462594 0.920472996 1.19745696 0.811766432 0.856274142 0.795203655 0.569277276 0.806799871 0.778122359 1 15.5994483 -5.489791629 24.32356953 0.784379651 0.986489578 0.303200927 0.128719336 529.7018893 389403.0282 0.036527162 0.054127406 3.24E-06 5.489791629 0.202109927 YMS(ph)FTDK ddPTM_HeLa_A485_30min_R1 5 YMSFTDK 7 0 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 YMS(0.778)FT(0.222)DK;YMS(0.999)FT(0.001)DK;YMS(0.999)FT(0.001)DK;YMS(0.969)FT(0.031)DK;YMS(0.944)FT(0.056)DK ;;;; 158.76 0.00035984 1109648000 2811100 1988350 1434970 3523880 2515110 2250050 3536880 2815560 1830490 4346610 TRUE FALSE FALSE 3436419.497 2220870.236 1965825.117 3716380.641 2264696.817 2367859.139 2781196.694 2125039.495 2197852.553 3263080.12 1.053121398 0.680605488 0.602444637 1.138917987 0.694036534 0.725651547 0.852322527 0.651237302 0.673551513 1 21.63780298 YMS(ph)FTDK ddPTM_HeLa_A486_30min_R1 5 YMSFTDK 7 0 E9PM17;B3KNX7;Q13153;Q13153-2;H0YCM0 E9PM17 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 YMS(0.998)FT(0.002)DK;YMS(0.984)FT(0.016)DK;YMS(0.997)FT(0.003)DK;YMS(0.991)FT(0.009)DK;YMS(0.935)FT(0.065)DK ;;;; 158.76 0.00035984 1401730000 3126340 3347040 1696900 1491260 2702860 3556970 4347790 3926960 2584100 4338030 TRUE FALSE FALSE 2907199.71 3081808.361 2353985.125 3471728.644 2363842.096 3118147.206 3259926.956 3032876.933 2808091.869 3251759.052 0.894039092 0.947735767 0.723911301 1.067646338 0.726942574 0.958910902 1.002511842 0.932688088 0.863560868 1 21.63278893 YMSGQTS(ph)PR ddPTM_HeLa_A485_30min_R1 2 YMSGQTSPR 9 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 YMSGQT(0.001)S(0.999)PR;YMS(0.017)GQT(0.359)S(0.623)PR ; 91.043 0.003396 1664480000 1914620 2435270 2379360 2151100 2357250 2012180 2366400 2030830 2102790 2724620 TRUE FALSE FALSE 2340520.614 2720053.642 3259584.277 2268609.146 2122553.913 2117534.633 1860799.308 1532765.758 2524800.665 2045422.377 1.144272518 1.329824917 1.593599598 1.109115248 1.037709344 1.035255435 0.909738414 0.749363934 1.234366404 1 20.96396736 -5.482693526 5.409945865 0.986131965 1.355889594 0.52942544 0.152115809 0.15235175 11.35841803 0.044467148 0.064623665 3.29E-06 5.482693526 0.369757629 YMSGQTS(ph)PR ddPTM_HeLa_A486_30min_R1 2 YMSGQTSPR 9 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 YMSGQT(0.011)S(0.989)PR;YMS(0.008)GQT(0.084)S(0.908)PR ; 62.338 0.026995 2961000000 4148000 4909400 3920400 1327670 4608600 4608100 4427500 4288900 4273700 4701800 TRUE FALSE FALSE 3857246.62 4520361.264 5438483.872 3090882.857 4030546.415 4039599.474 3319692.671 3312411.096 4644147.757 3524438.676 1.094428638 1.282576228 1.543078025 0.876985852 1.14359953 1.146168183 0.941906776 0.939840752 1.317698557 1 21.74896207 -5.270318683 24.99286096 1.052921431 1.304282497 0.354479458 0.157296876 697.1040777 1962159.713 0.044044154 0.066424569 5.37E-06 5.270318683 0.251361065 YMSQMS(ph)VPEQAELEK ddPTM_HeLa_A485_30min_R1 2 YMSQMSVPEQAELEK 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 YMSQMS(1)VPEQAELEK;YMS(0.017)QMS(0.983)VPEQAELEK ; 148.97 2.97E-07 0 150617 127068 96034 194616 205261 140513 214076 220659 117607 253829 TRUE FALSE FALSE 184121.232 141927.4973 131560.9729 205247.3793 184824.4941 147870.0434 168336.9138 166542.0343 141209.6461 190554.1017 0.966241243 0.744814706 0.690412706 1.077108168 0.969931859 0.776000318 0.883407454 0.873988189 0.741047529 1 17.53984114 -5.224722533 24.99837087 0.894490937 0.794922128 0.140845484 0.114491888 1250.860172 851636.4371 0.03179737 0.055072741 5.96E-06 5.224722533 -0.099568809 YMSQMS(ph)VPEQAELEK ddPTM_HeLa_A486_30min_R1 3 YMSQMSVPEQAELEK 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 YMSQMS(1)VPEQAELEK;YMSQMS(1)VPEQAELEK;YMSQMS(1)VPEQAELEK ;; 169.28 8.20E-11 143140000 339850 341920 223553 161116 378190 408890 462370 443780 289952 451080 TRUE FALSE FALSE 316028.27 314825.0139 310118.7086 375086.1904 330753.8837 358445.3091 346680.1355 342740.9816 315085.2728 338126.632 0.934644716 0.93108612 0.917167355 1.109306854 0.978195305 1.060091916 1.025296746 1.013646809 0.931855829 1 18.36720413 -5.211391331 24.9999473 1.018017213 0.927977999 0.459476086 0.044363663 322.8625275 161275.4503 0.011711735 0.020285275 6.15E-06 5.211391331 -0.090039214 YMWEGEVKQPNLLMIDK ddPTM_HeLa_A486_30min_R1 1 YMWEGEVKQPNLLMIDK 17 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 0 0 89.541 0.0032215 440950000 220470 349200 725580 13353 750740 146410 85640 196490 364950 19943 FALSE FALSE TRUE 205016.1915 321528.1202 1006544.008 31086.45882 656575.1888 128347.4228 64211.96619 151753.5163 396584.1598 14949.14299 13.71424379 21.50813063 67.33121813 2.079481 43.92059057 8.585604061 4.295361027 10.1513188 26.52888932 1 13.86777516 -6.288706229 24.19784705 10 29.80999085 0.236905711 17.58606646 751.8611263 667232.9246 6.072838876 5.35729676 5.14E-07 6.288706229 19.80999085 YNAPTSHVT(ph)PSVK ddPTM_HeLa_A485_30min_R1 1 YNAPTSHVTPSVK 13 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 YNAPTSHVT(0.975)PS(0.025)VK 88.427 0.0022219 354200000 467010 472200 375570 553200 709740 615060 765600 792860 421470 726400 TRUE FALSE FALSE 570894.7633 527419.6824 514508.9718 583419.9152 639075.7936 647263.5905 602023.3056 598409.8418 506055.163 545321.8484 1.046895086 0.967171376 0.94349598 1.069863452 1.171924058 1.186938672 1.103977967 1.097351671 0.927993559 1 19.05674843 -5.402797559 5.611939036 1.094908721 0.984889491 0.233088771 0.075710573 0.300641507 12.59812749 0.022445159 0.033499372 3.96E-06 5.402797559 -0.11001923 YNAPTSHVT(ph)PSVK ddPTM_HeLa_A486_30min_R1 2 YNAPTSHVTPSVK 13 0 O60271;O60271-3;A0A087X2D8;O60271-4;O60271-2;O60271-5;O60271-9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 YNAPTSHVT(0.998)PS(0.002)VK;YNAPTSHVT(0.997)PS(0.003)VK ; 130.87 2.54E-05 524100000 1306890 1454540 936910 470510 1596890 1524820 1907100 1785120 1258400 1816560 TRUE FALSE FALSE 1215283.76 1339276.953 1299706.643 1095371.058 1396593.166 1336703.212 1429923.409 1378687.145 1367479.125 1361681.552 0.892487497 0.983546374 0.954486489 0.804425276 1.025638604 0.981656254 1.050115871 1.012488671 1.004257657 1 20.37695792 -5.864373196 20.56650241 1.013348182 0.916972083 0.538117441 0.046774416 2.807278764 551.5124314 0.014609267 0.016565392 1.37E-06 5.864373196 -0.096376099 YNDWS(ph)DDDDDSNESK ddPTM_HeLa_A485_30min_R1 6 YNDWSDDDDDSNESK 15 0 Q9UH62;H3BV87 Q9UH62 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 0 YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK ;;;;; 416.15 1.19E-152 4244160000 1940280 1568340 1077538 3175320 2049750 1862330 3071390 3004590 1548340 4517420 TRUE FALSE FALSE 2371888.592 1751743.72 1476164.146 3348779.691 1845669.693 1959838.719 2415162.436 2267709.591 1859077.636 3391310.331 0.699401812 0.516538904 0.435278403 0.987458936 0.544234975 0.577900141 0.712162026 0.668682418 0.548188592 1 21.69341138 -10.44088214 3.336393147 1.005001434 0.632699836 0.368813144 0.14434401 124233722.8 187395753.6 5985147.802 0.035734439 3.62E-11 10.44088214 -0.372301598 YNDWS(ph)DDDDDSNESK ddPTM_HeLa_A486_30min_R1 4 YNDWSDDDDDSNESK 15 0 Q9UH62;H3BV87 Q9UH62 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 0 YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK;YNDWS(1)DDDDDSNESK ;;; 498.31 7.34E-266 4058370000 4881080 4485400 2081850 2683590 4077700 5351410 7091330 6276140 3933410 8643080 TRUE FALSE FALSE 4538941.498 4129960.568 2887998.074 6247533.141 3566236.843 4691207.443 5317004.23 4847199.929 4274361.146 6478796.511 0.70058405 0.637457985 0.445761504 0.964304579 0.550447423 0.724086246 0.820677763 0.748163632 0.659746164 1 22.62729442 -13.99999997 0.147674638 2.072279852 0.598131725 0.336439011 0.132241188 155.4623248 1.371990334 48.95120093 0.685900357 1.00E-14 13.99999997 -1.474148127 YNEQHVPGSPFTAR ddPTM_HeLa_A485_30min_R1 2 YNEQHVPGSPFTAR 14 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 70.134 0.022335 95262000 111492 148839 155778 131907 188516 145643 194005 185389 123998 177110 FALSE FALSE TRUE 136293.0108 166244.4263 213406.7647 139112.7454 169746.6851 153268.6423 152554.2469 139922.0571 148883.2612 132959.7365 1.025069802 1.250336611 1.605048042 1.046277235 1.276677358 1.152744781 1.14737176 1.052364128 1.119762006 1 17.0206299 -6.799876934 0.824988165 1.039428986 1.262752748 0.213732921 0.150852814 1.000779561 1.324838679 0.125178424 0.072572772 1.59E-07 6.799876934 0.223323762 YNGLIHR ddPTM_HeLa_A485_30min_R1 2 YNGLIHR 7 0 P46779;H0YMF4;H0YKD8;P46779-4;P46779-5;P46779-2;P46779-3;H0YLP6 P46779 RPL28 60S ribosomal protein L28 0 0 ; ; 94.407 0.011811 22675100 7818.5 9799.2 10056 7830 11482.1 8666.5 11234.8 9511.6 9635.5 11314.4 FALSE FALSE TRUE 9557.698351 10945.1312 13776.13287 8257.733073 10338.90181 9120.264539 8834.3932 7178.865186 11569.25647 8493.928306 1.125238877 1.288582951 1.62188005 0.972192462 1.217210863 1.073739289 1.040083326 0.845176098 1.36206194 1 13.05221622 -5.290497409 24.95532825 1.071150056 1.339569006 0.340715995 0.173519767 755.2396235 648605.7619 0.048072432 0.071316084 5.12E-06 5.290497409 0.26841895 YNLDAS(ph)EEEDSNK ddPTM_HeLa_A485_30min_R1 3 YNLDASEEEDSNK 13 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK ;; 319.8 1.13E-68 1370010000 1581970 895250 782050 3220210 1222230 823170 1409390 774930 1038820 3682580 TRUE FALSE FALSE 1933873.769 999941.6999 1071362.839 3396121.918 1100540.49 866269.9083 1108262.313 584877.2025 1247301.645 2764580.579 0.699517961 0.361697433 0.387531782 1.2284402 0.398085879 0.313345871 0.400879005 0.211560917 0.451172107 1 21.39862919 -10.09826703 4.905246932 1.000018383 0.489948075 0.236118804 0.27254188 768119557 8.67556069 166991.7128 0.068725456 7.98E-11 10.09826703 -0.510070308 YNLDAS(ph)EEEDSNK ddPTM_HeLa_A486_30min_R1 3 YNLDASEEEDSNK 13 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK ;; 361.39 1.99E-95 2355400000 2196410 2590470 1119550 1057200 1596820 3156870 3038480 2579170 2188370 3641200 TRUE FALSE FALSE 2042453.001 2385191.723 1553069.743 2461215.028 1396531.946 2767407.476 2278220.166 1991949.294 2378059.674 2729419.82 0.748310314 0.873882319 0.569010942 0.901735603 0.511658901 1.01391785 0.83469027 0.729806855 0.871269292 1 21.38016289 -6.282505419 24.99973561 0.869596847 0.731023463 0.273543259 0.135209126 1330.387619 1578807.987 0.045750174 0.040387023 5.22E-07 6.282505419 -0.138573385 YNLDAS(ph)EEEDSNKK ddPTM_HeLa_A485_30min_R1 2 YNLDASEEEDSNKK 14 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNKK;YNLDAS(1)EEEDSNKK ; 102.07 0.00032418 2903300000 1946680 1273260 883600 4417800 1832670 1481150 2812250 2197730 1340250 5154300 TRUE FALSE FALSE 2379712.25 1422156.681 1210480.41 4659133.228 1650202.94 1558700.724 2211389.814 1658733.272 1609225.881 3869427.868 0.615003647 0.367536682 0.312831884 1.204088404 0.426472077 0.402824598 0.571503046 0.428676623 0.415882124 1 21.88368884 -10.03520888 4.67225185 1.000012841 0.527893841 0.255241358 0.242283801 72483893.81 51894397.75 9745.285842 0.059226909 9.22E-11 10.03520888 -0.472119 YNLDAS(ph)EEEDSNKK ddPTM_HeLa_A486_30min_R1 3 YNLDASEEEDSNKK 14 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNKK;YNLDAS(1)EEEDSNKK;YNLDAS(1)EEEDSNKK ;; 279.44 1.28E-48 2657200000 2115850 1871480 699429 1251070 1388910 2984480 3353210 2875840 1692710 4470620 TRUE FALSE FALSE 1967539.841 1723177.109 970266.6402 2912554.186 1214699.957 2616285.202 2514201.391 2221074.011 1839435.466 3351147.653 0.587124187 0.514205069 0.289532644 0.869121414 0.362472825 0.780713198 0.750250855 0.66278011 0.548897171 1 21.67622382 -14 0.110291469 2.278075561 0.370158553 0.367483252 0.167056179 178.6015054 1.306525969 51.65814083 2.037376497 1.00E-14 14 -1.907917008 YNLDAS(ph)EEEDSNKKK ddPTM_HeLa_A485_30min_R1 5 YNLDASEEEDSNKKK 15 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK;YNLDAS(1)EEEDSNKKK ;;;; 235.7 2.19E-41 7973360000 3109040 1308550 871600 7315200 2274760 2263050 4703310 3140970 1792790 9449300 TRUE FALSE FALSE 3800635.222 1461573.54 1194041.11 7714810.853 2048276.907 2381539.799 3698409.396 2370642.183 2152586.509 7093763.411 0.535771353 0.206036409 0.168322658 1.087548372 0.288743335 0.335723037 0.521360691 0.334186812 0.303447745 1 22.75811978 -9.922931127 4.132690518 1.000019675 0.420157135 0.326696577 0.249739633 157557149.2 330059997.9 47552.87736 0.064564274 1.19E-10 9.922931127 -0.57986254 YNLDAS(ph)EEEDSNKKK ddPTM_HeLa_A486_30min_R1 3 YNLDASEEEDSNKKK 15 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNKKK;YNLDAS(0.998)EEEDS(0.002)NKKK;YNLDAS(1)EEEDSNKKK ;; 228.01 2.89E-34 4016380000 1700720 1353210 326827 1256390 926400 2223080 2943530 2487120 1080830 3890570 TRUE FALSE FALSE 1581508.311 1245976.711 453383.1671 2924939.414 810202.2737 1948818.992 2207027.661 1920857.069 1174517.215 2916345.949 0.542291051 0.427238995 0.155462752 1.002946655 0.277814185 0.668239992 0.756778414 0.658651992 0.402735901 1 21.47573044 -14 0.121161744 2.412636275 0.339745928 0.26249687 0.23161381 209.850985 1.640787559 73.27620377 2.133269529 1.00E-14 14 -2.072890347 YNS(ph)HQMGQSK ddPTM_HeLa_A486_30min_R1 1 YNSHQMGQSK 10 0 Q6PIJ6;Q6PIJ6-2 Q6PIJ6 FBXO38 F-box only protein 38 1 0 YNS(1)HQMGQSK 95.651 0.0017367 146360000 371590 398460 236570 89231 435740 405160 426680 437790 323640 385980 TRUE FALSE FALSE 345543.4599 366884.5784 328176.2396 207734.2775 381085.4261 355175.4786 319920.151 338114.7739 351693.3758 289328.0957 1.194296251 1.268057212 1.134270209 0.717988611 1.317139371 1.22758724 1.105734824 1.168620604 1.215552105 1 18.1423469 YNSHSLENES(ph)IKR ddPTM_HeLa_A486_30min_R1 1 YNSHSLENESIKR 13 1 Q13496;Q13496-2;C9J2A2 Q13496 MTM1 Myotubularin 1 0 YNSHSLENES(1)IKR 76.526 0.0060548 170930000 119210 110850 83420 53568 110010 136440 155210 176540 79925 144040 TRUE FALSE FALSE 110853.9946 102065.8423 115722.4581 124709.0112 96211.52 119607.42 116374.8164 136345.6958 86852.96335 107971.4465 1.026697319 0.945304019 1.071787606 1.155018436 0.891082996 1.107768988 1.077829557 1.26279401 0.804406778 1 16.72029031 YNSPELDEEGYSIR ddPTM_HeLa_A485_30min_R1 3 YNSPELDEEGYSIR 14 0 F6R8P8;Q9BQI5-4;Q9BQI5-5;Q9BQI5;Q9BQI5-2;Q9BQI5-3 F6R8P8 SGIP1 SH3-containing GRB2-like protein 3-interacting protein 1 0 0 ;; ;; 51.009 0.026828 2031260000 79118 411100 292393 66602 614070 526700 663690 2025540 235549 138466 FALSE FALSE TRUE 96717.52615 459174.5689 400561.3382 70240.29861 552931.0347 554277.1976 521887.2097 1528773.139 282821.5237 103948.9745 0.930432711 4.417307349 3.853441943 0.675719015 5.31925435 5.332204578 5.020609508 14.7069574 2.720772621 1 16.665516 -6.213492486 1.738629707 6.845840661 2.753239806 0.121614874 3.616748208 0.60149036 3.59651515 1.458305159 1.377494015 6.12E-07 6.213492486 -4.092600855 YNSPELDEEGYSIR ddPTM_HeLa_A486_30min_R1 1 YNSPELDEEGYSIR 14 0 F6R8P8;Q9BQI5-4;Q9BQI5-5;Q9BQI5;Q9BQI5-2;Q9BQI5-3 F6R8P8 SGIP1 SH3-containing GRB2-like protein 3-interacting protein 1 0 0 47.227 0.032182 288000000 69533 30928 68464 36117 238410 39967 97230 129160 23549 63432 FALSE FALSE TRUE 64659.09577 28477.15264 94975.09433 84082.20125 208506.3947 35036.27789 72902.02561 99753.08754 25590.24628 47548.21433 1.359863807 0.598911085 1.997448183 1.768356655 4.385157207 0.736857911 1.533223206 2.097935516 0.538195738 1 15.53710354 YNSWPSSLQELLRPTFPGVIR ddPTM_HeLa_A485_30min_R1 1 YNSWPSSLQELLRPTFPGVIR 21 1 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 0 109.83 4.11E-06 22308000 5906 7072.6 9105.3 4484.3 7797.5 7339.1 7776.5 11414 6967.3 6819.7 FALSE FALSE TRUE 7219.769325 7899.679047 12473.72937 4729.265954 7021.153521 7723.363928 6114.987247 8614.698604 8365.573202 5119.674297 1.410200904 1.54300422 2.436430259 0.92374352 1.371406288 1.508565483 1.194409428 1.682665362 1.634004961 1 12.32183632 -5.283145054 24.98089241 1.362559704 1.771191299 0.275498875 0.34274721 1155.62808 1330000.633 0.097173034 0.144274382 5.21E-06 5.283145054 0.408631595 YNSWPSSLQELLRPTFPGVIR ddPTM_HeLa_A486_30min_R1 2 YNSWPSSLQELLRPTFPGVIR 21 1 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 0 ; ; 127.1 1.03E-08 42505000 14590.4 14846.3 17689.6 3314.5 22556.6 9884.6 9373.1 12324.7 18988.2 7317.1 FALSE FALSE TRUE 13567.6883 13669.82512 24539.48686 7716.323506 19727.3409 8665.138551 7027.851241 9518.634856 20634.11246 5484.850534 2.473666004 2.492287627 4.47404842 1.406842987 3.596696168 1.5798313 1.281320466 1.735441066 3.762019099 1 12.42123659 -6.277430818 24.76970242 1.880787309 2.872433518 0.200132747 1.016222873 1274.484024 1974087.181 0.35064343 0.310245491 5.28E-07 6.277430818 0.991646209 YNTEGRVS(ph)PSPSQESLSSSK ddPTM_HeLa_A485_30min_R1 2 YNTEGRVSPSPSQESLSSSK 20 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 YNTEGRVS(0.829)PS(0.171)PSQESLSSSK;YNTEGRVS(0.943)PS(0.057)PSQESLSSSK ; 163.74 1.22E-13 1352960000 551200 462470 273650 745330 543370 426560 639190 496990 374510 844820 TRUE FALSE FALSE 673812.5384 516551.8435 374884.5225 786045.4906 489270.1749 448894.022 502621.8348 375102.4232 449670.7218 634221.9218 1.062423917 0.814465451 0.591093606 1.239385558 0.771449485 0.707786985 0.792501517 0.591437177 0.709011635 1 19.27462822 -5.976000822 24.98909649 0.736965759 0.908656203 0.153557595 0.183800694 423.2570066 440713.3444 0.056361429 0.063905025 1.06E-06 5.976000822 0.171690444 YNTEGRVS(ph)PSPSQESLSSSK ddPTM_HeLa_A486_30min_R1 3 YNTEGRVSPSPSQESLSSSK 20 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 YNTEGRVS(0.875)PS(0.125)PSQESLSSSK;YNTEGRVS(0.99)PS(0.01)PSQESLSSSK;YNTEGRVS(0.838)PS(0.161)PSQESLSSSK ;; 220.05 1.22E-35 1934280000 696081 721280 370678 229121 661923 717940 829946 814230 591685 756764 TRUE FALSE FALSE 647289.3165 664123.1459 514214.4487 533405.2671 578898.4452 629367.8623 622284.7325 628847.6035 642972.7322 567265.3687 1.141069687 1.170745091 0.906479537 0.940309944 1.020507292 1.10947697 1.096990521 1.108559835 1.133460225 1 19.11366427 -6.26026362 24.80568945 1.096938314 1.030826067 0.093607147 0.081557257 229.1241728 4833986.599 0.030297248 0.028724239 5.49E-07 6.26026362 -0.066112247 YNVSTT(ph)PYLQSVK ddPTM_HeLa_A485_30min_R1 1 YNVSTTPYLQSVK 13 0 Q8WWK9-6;Q8WWK9-5;Q8WWK9 Q8WWK9-6 CKAP2 Cytoskeleton-associated protein 2 1 0 YNVS(0.001)T(0.002)T(0.962)PY(0.035)LQSVK 157.37 7.80E-08 67165000 237330 232700 172450 235790 294550 237720 295260 345040 218420 346240 TRUE FALSE FALSE 290123.2397 259912.2408 236246.4312 248670.6106 265223.5678 250166.6516 232175.2889 260418.399 262254.8905 259928.7401 1.116164529 0.999936524 0.908889225 0.956687631 1.020370305 0.962443212 0.893226693 1.00188382 1.008949185 1 17.98775663 -4.306121655 3.629053379 0.966978683 1.126480264 0.545282602 0.040037726 0.183162907 4.318544512 0.010477145 0.072817084 4.94E-05 4.306121655 0.15950158 YNVSTT(ph)PYLQSVK ddPTM_HeLa_A486_30min_R1 2 YNVSTTPYLQSVK 13 0 Q8WWK9-6;Q8WWK9-5;Q8WWK9 Q8WWK9-6 CKAP2 Cytoskeleton-associated protein 2 1 0 YNVS(0.001)T(0.074)T(0.925)PYLQSVK;YNVST(0.02)T(0.974)PY(0.006)LQSVK ; 203.27 7.49E-21 237690000 769040 713030 478670 272620 726790 656610 825600 779160 629750 830470 TRUE FALSE FALSE 715134.2673 656526.906 664023.8432 634673.1375 635629.2212 575604.1341 619026.1477 601762.2769 684337.2371 622514.9065 1.148782559 1.054636442 1.066679426 1.019530827 1.021066668 0.924643134 0.994395702 0.966663241 1.099310603 1 19.24774886 -4.046954195 0.749222939 0.996193038 1.271514741 0.507899382 0.043432034 2.969255825 1.02685521 0.017314792 0.738850909 8.98E-05 4.046954195 0.275321703 YPDVAS(ph)PTLR ddPTM_HeLa_A486_30min_R1 1 YPDVASPTLR 10 0 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 YPDVAS(0.985)PT(0.015)LR 78.342 0.0087024 313670000 138130 171960 137880 62189 162260 155880 180430 176290 166240 177520 TRUE FALSE FALSE 128447.8003 158333.2633 191270.8286 144779.1349 141907.8378 136649.1105 135284.5056 136152.6154 180649.817 133067.8365 0.965280594 1.189868773 1.437393389 1.088009985 1.066432291 1.026913145 1.016658188 1.023182002 1.35757687 1 17.02180238 -5.481433038 24.98181115 1.076976327 1.207741708 0.117081126 0.143407934 978.0441518 589525.4238 0.040846667 0.060577163 3.30E-06 5.481433038 0.130765381 YPDVAS(ph)PTLRR ddPTM_HeLa_A485_30min_R1 5 YPDVASPTLRR 11 1 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 YPDVAS(0.968)PT(0.032)LRR;YPDVAS(1)PTLRR;YPDVAS(1)PTLRR;YPDVAS(0.965)PT(0.035)LRR;YPDVAS(0.941)PT(0.059)LRR ;;;; 156.6 1.61E-07 1635580000 1344890 1743240 1673990 1373150 2249890 1716130 2001180 2095960 1710830 1828620 TRUE FALSE FALSE 1644056.141 1947096.754 2293268.562 1448161.708 2025883.052 1805983.913 1573611.545 1581922.524 2054177.888 1372778.687 1.197611936 1.41836173 1.670530423 1.054912726 1.475753572 1.315568147 1.146296602 1.152350731 1.496364933 1 20.38866763 -6.570663256 6.658012829 1.212902664 1.369286713 0.140295378 0.1914729 0.433540918 45.19133688 0.07198402 0.055803259 2.69E-07 6.570663256 0.156384049 YPDVAS(ph)PTLRR ddPTM_HeLa_A486_30min_R1 5 YPDVASPTLRR 11 1 Q8IVL1-8;Q8IVL1-10;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-13;Q8IVL1;Q8IVL1-2;Q8IVL1-3;Q8IVL1-12;Q8IVL1-11;Q8IVL1-9;Q8IVL1-4;Q8IVL1-5;E9PNV5 Q8IVL1-8 NAV2 Neuron navigator 2 1 0 YPDVAS(0.998)PT(0.002)LRR;YPDVAS(0.989)PT(0.011)LRR;YPDVAS(0.995)PT(0.005)LRR;YPDVAS(0.97)PT(0.03)LRR;YPDVAS(0.967)PT(0.033)LRR ;;;; 108.97 0.00035356 1731110000 1719190 1869860 1677760 656427 2260580 1640230 2023050 2095580 1540990 1829460 TRUE FALSE FALSE 1598683.659 1721685.484 2327433.604 1528195.23 1977036.977 1437875.099 1516861.492 1618462.18 1674564.254 1371351.308 1.165772512 1.255466395 1.697182618 1.114371803 1.441670683 1.048509664 1.106107154 1.180195163 1.22110523 1 20.38716677 -6.266244369 24.98308577 1.122128369 1.33835627 0.3237066 0.161249827 525.393144 2731722.622 0.055531903 0.050562483 5.42E-07 6.266244369 0.216227901 YPEGYRT(ph)LPR ddPTM_HeLa_A485_30min_R1 1 YPEGYRTLPR 10 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;Q9HAU0-3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 YPEGYRT(1)LPR 131.13 9.83E-05 0 125330 111230 125320 102220 176800 133570 232560 250810 97827 113850 TRUE FALSE FALSE 153209.2261 124237.3809 171681.083 107804.0198 159197.1712 140563.5187 182871.6562 189298.4542 117459.9816 85469.29025 1.792564624 1.453590881 2.00868736 1.261318767 1.862624233 1.64460847 2.139618284 2.214812521 1.374294571 1 16.38311852 YPEGYRT(ph)LPR ddPTM_HeLa_A486_30min_R1 1 YPEGYRTLPR 10 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;A0JP02;Q9HAU0-3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 YPEGYRT(1)LPR 120.87 0.00027015 334050000 185620 274260 348740 120960 380450 380490 451010 422230 255470 269380 TRUE FALSE FALSE 172608.9965 252526.6388 483781.4676 281600.993 332730.4134 333549.0123 338162.5277 326097.4462 277614.3453 201925.4946 0.854815272 1.250593142 2.395841439 1.394578696 1.647788032 1.651841997 1.674689609 1.614939445 1.374835534 1 17.62346355 -8.077384134 3.055753499 1.000608808 1.581661572 0.175490081 0.368219813 0.591770675 12.94264986 0.359794034 0.096003034 8.37E-09 8.077384134 0.581052764 YPEPERPS(ph)SR ddPTM_HeLa_A485_30min_R1 1 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YPEPERPS(0.645)S(0.355)R 70.54 0.006629 1250200000 670030 722100 735180 696150 751470 625200 661680 610360 682550 871220 TRUE FALSE FALSE 819075.8619 806543.3136 1007153.675 734178.9118 676651.0082 657934.5053 520306.6626 460668.253 819531.5243 654040.8876 1.25233128 1.23316956 1.539894056 1.122527545 1.034569889 1.005953172 0.795526201 0.704341673 1.253027968 1 19.3190213 -5.673160461 2.220808811 0.932439543 1.33088256 0.517921871 0.159904784 0.235469758 2.374146779 0.052839952 0.072049401 2.12E-06 5.673160461 0.398443017 YPEPERPS(ph)SR ddPTM_HeLa_A486_30min_R1 3 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YPEPERPS(0.5)S(0.5)R;YPEPERPS(0.64)S(0.36)R;YPEPERPS(0.622)S(0.378)R ;; 65.234 0.0077023 3079100000 1780400 2106600 1421610 607270 1642700 1638050 1690900 1619530 1499130 2043830 TRUE FALSE FALSE 1655603.154 1939665.344 1972095.464 1413755.25 1436657.248 1435964.045 1267818.935 1250798.373 1629075.795 1532041.665 1.08065152 1.266065661 1.287233572 0.922791646 0.937740325 0.937287855 0.827535546 0.81642582 1.063336483 1 20.5470241 -5.270499461 24.64472675 0.918097591 1.216791793 0.694503004 0.085464174 269.6377959 733453.5896 0.024077192 0.036304711 5.36E-06 5.270499461 0.298694202 YPEPERPS(ph)SRAS(ph)HSSERPPPR ddPTM_HeLa_A485_30min_R1 1 YPEPERPSSRASHSSERPPPR 21 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 YPEPERPS(0.533)S(0.468)RAS(0.855)HS(0.123)S(0.022)ERPPPR 84.948 0.00099688 485850000 49996 77838 119650 30689 156630 63847 87891 80218 102680 79181 TRUE FALSE FALSE 61117.43772 86940.477 163913.5141 32365.46236 141035.3672 67189.93019 69112.36985 60544.40972 123286.9342 59442.63392 1.028175128 1.462594627 2.757507588 0.544482306 2.372629844 1.130332318 1.162673409 1.018535111 2.074048979 1 15.85921042 YPEPERPSS(ph)R ddPTM_HeLa_A485_30min_R1 2 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YPEPERPS(0.212)S(0.788)R;YPEPERPS(0.091)S(0.909)R ; 77.74 0.0044075 2690400000 1238360 1422650 1607120 1394630 1432340 1132070 1285750 1125860 1305170 1682310 TRUE FALSE FALSE 1513828.91 1589016.542 2201660.566 1470815.106 1289731.2 1191343.435 1011039.009 849741.0697 1567105.647 1262941.078 1.198653632 1.258187393 1.74328051 1.164595191 1.021212488 0.943308802 0.800543293 0.672827169 1.24083829 1 20.2683559 -5.668237214 2.837893982 0.914912836 1.39228008 0.514915196 0.195175522 0.204206918 3.32291297 0.062299361 0.082604012 2.15E-06 5.668237214 0.477367244 YPEPERPSS(ph)R ddPTM_HeLa_A486_30min_R1 2 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YPEPERPS(0.256)S(0.744)R;YPEPERPS(0.199)S(0.801)R ; 89.189 0.0016402 3520300000 2205370 2483700 1702750 744360 1907360 1797350 2136930 1904200 1840700 2265290 TRUE FALSE FALSE 2050784.952 2286882.567 2362100.401 1732907.698 1668121.123 1575611.231 1602247.512 1470655.228 2000253.358 1698046.639 1.207731816 1.346772529 1.391069212 1.020530095 0.982376505 0.927896322 0.943582747 0.866086475 1.177973156 1 20.69544465 -5.335737965 5.257861911 0.974967309 1.317753021 0.745911862 0.087366982 0.099442068 5.020072166 0.024491729 0.037048485 4.62E-06 5.335737965 0.342785712 YPEPERPSS(ph)RAS(ph)HSSERPPPR ddPTM_HeLa_A486_30min_R1 1 YPEPERPSSRASHSSERPPPR 21 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 2 0 YPEPERPS(0.474)S(0.533)RAS(0.922)HS(0.037)S(0.033)ERPPPR 67.832 0.0039256 530010000 61094 83372 106500 6273 119750 54044 58957 71727 80985 28587 TRUE FALSE FALSE 56811.62609 76765.29908 147739.6522 14603.86102 104729.8384 47376.60076 44205.33502 55396.32789 88004.84501 21428.62913 2.651202079 3.582370978 6.894498536 0.681511679 4.887379297 2.210902082 2.062910079 2.585155007 4.106881708 1 14.38725194 -5.275585977 24.99996539 2.639607078 4.296658916 0.229347293 1.556074153 1258.666372 2224321.093 0.427279844 0.63721005 5.30E-06 5.275585977 1.657051838 YPES(ph)NRTPVKPSSVEEEDSFFR ddPTM_HeLa_A485_30min_R1 1 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 YPES(0.735)NRT(0.265)PVKPSSVEEEDSFFR 174.86 9.68E-15 978600000 367850 374290 328310 473850 453300 386180 563570 529560 367770 489630 TRUE FALSE FALSE 449676.9634 418059.9596 449765.5311 499735.2256 408167.8604 406399.7877 443158.6656 399684.5797 441578.0656 367574.252 1.223363609 1.137348324 1.223604561 1.359549052 1.110436485 1.105626375 1.205630327 1.087357391 1.201330243 1 18.48767619 YPES(ph)NRTPVKPSSVEEEDSFFR ddPTM_HeLa_A486_30min_R1 1 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 YPES(0.467)NRT(0.32)PVKPS(0.181)S(0.033)VEEEDSFFR 161.24 7.38E-14 390720000 261330 258060 172880 95541 296430 270410 307330 296640 223040 309210 TRUE FALSE FALSE 243012.1165 237610.3858 239823.7659 222424.2764 259248.9853 237049.5635 230432.7834 229101.5476 242373.2868 231781.8034 1.048452091 1.025146851 1.034696263 0.959627862 1.118504479 1.022727238 0.994179785 0.988436298 1.045695923 1 17.82240778 -6.526439949 24.90255473 1.006448516 1.035999264 0.118836714 0.038692572 235.3370682 1645603.004 0.014622997 0.011387788 2.98E-07 6.526439949 0.029550748 YPESNRT(ph)PVKPSSVEEEDSFFR ddPTM_HeLa_A485_30min_R1 3 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 YPES(0.011)NRT(0.989)PVKPSSVEEEDSFFR;YPES(0.012)NRT(0.988)PVKPSSVEEEDSFFR;YPES(0.058)NRT(0.941)PVKPSSVEEEDSFFR ;; 196.8 1.71E-21 4462750000 1809240 1807810 1456510 2004160 2339220 1894580 2553080 2250100 1627070 2460850 TRUE FALSE FALSE 2211699.196 2019217.654 1995333.659 2113642.186 2106319.043 1993777.279 2007593.601 1698259.447 1953608.025 1847405.384 1.197192135 1.093001932 1.080073533 1.144113904 1.140149889 1.079231065 1.086709836 0.919267348 1.057487459 1 20.81706905 -7.072815159 5.034838314 0.991221048 1.118404253 0.618495467 0.045564051 0.143716302 6.719064102 0.021301357 0.012229393 8.46E-08 7.072815159 0.127183205 YPESNRT(ph)PVKPSSVEEEDSFFR ddPTM_HeLa_A486_30min_R1 4 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 YPES(0.034)NRT(0.659)PVKPS(0.265)S(0.042)VEEEDSFFR;YPES(0.064)NRT(0.931)PVKPS(0.004)S(0.001)VEEEDSFFR;YPES(0.105)NRT(0.894)PVKPSSVEEEDSFFR;YPES(0.007)NRT(0.986)PVKPS(0.007)S(0.001)VEEEDSFFR ;;; 209.68 1.65E-26 5593110000 2671430 2615870 1718874 939133 2698850 2716240 3109300 2940250 2231581 3197320 TRUE FALSE FALSE 2484176.552 2408578.934 2384468.046 2186349.085 2360335.067 2381137.926 2331320.253 2270819.26 2425016.238 2396690.261 1.036502961 1.004960455 0.994900378 0.912236813 0.984831084 0.993510911 0.972724883 0.947481323 1.011818789 1 21.19261204 -4.627349494 2.273264261 0.973060843 1.033172145 0.320739148 0.02734773 0.381962134 3.591068163 0.007401503 0.033767515 2.36E-05 4.627349494 0.060111301 YPIEHGIITNWDDMEK ddPTM_HeLa_A485_30min_R1 7 YPIEHGIITNWDDMEK 16 0 P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 P68133 ACTA1;ACTC1;ACTG2;ACTA2 "Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;;;;; ;;;;;; 196.64 7.95E-19 6177565000 3319759 2846935 2332894 3756947 3456334 3686316 4854070 4720930 2614186 5416300 FALSE FALSE TRUE 4058227.937 3179859.283 3195928.57 3962179.502 3112209.251 3879325.806 3816958.29 3563114.515 3138829.151 4066116.09 0.998060028 0.782038489 0.785990488 0.974438362 0.765400983 0.954061743 0.938723393 0.87629434 0.771947746 1 21.95521997 YPIEHGIITNWDDMEK ddPTM_HeLa_A486_30min_R1 8 YPIEHGIITNWDDMEK 16 0 P68133;P68032;P63267;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 P68133 ACTA1;ACTC1;ACTG2;ACTA2 "Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle" 0 0 ;;;;;;; ;;;;;;; 209.6 5.28E-25 4436098000 3937749 4262106 2890162 2178363 4946833 5012158 6207140 5622577 4065344 6341857 FALSE FALSE TRUE 3661733.13 3924361.198 4009310.128 5071339.152 4326355.078 4393808.906 4654047.92 4342438.957 4417731.291 4753814.729 0.770272579 0.82551833 0.843387965 1.066793605 0.910080709 0.924270119 0.979013316 0.913464071 0.929302369 1 22.18065425 -5.054834453 8.543056601 0.954246966 0.80676526 0.677146726 0.04711201 0.206561389 30.60521581 0.012613821 0.022060225 8.81E-06 5.054834453 -0.147481706 YPPFPSDYLALQLPEPS(ph)PLRPK ddPTM_HeLa_A485_30min_R1 1 YPPFPSDYLALQLPEPSPLRPK 22 1 I3L0W8;I3NI13;I3L270;Q8NBZ0 I3L0W8 INO80E INO80 complex subunit E 1 0 YPPFPSDYLALQLPEPS(1)PLRPK 169.01 2.77E-14 57811000 35432 21115 17058 49684 36053 35292 47352 41218 26898 57874 TRUE FALSE FALSE 43313.72616 23584.21557 23368.46404 52398.11111 32463.43673 37139.83455 37234.85837 31109.22087 32296.18188 43447.07689 0.996930732 0.54282629 0.537860443 1.206021552 0.747194957 0.854829305 0.857016422 0.716025636 0.743345334 1 15.4069715 -11.57599652 1.948395764 3.701889123 0.79611549 0.090841756 0.189195506 14641865.01 755709.4657 174791079.1 0.047559097 2.65E-12 11.57599652 -2.905773633 YPPFPSDYLALQLPEPS(ph)PLRPK ddPTM_HeLa_A486_30min_R1 1 YPPFPSDYLALQLPEPSPLRPK 22 1 I3L0W8;I3NI13;I3L270;Q8NBZ0 I3L0W8 INO80E INO80 complex subunit E 1 0 YPPFPSDYLALQLPEPS(1)PLRPK 113.5 5.11E-05 76489000 39377 55475 43190 29070 65876 61164 74122 71551 49596 74110 TRUE FALSE FALSE 36616.87564 51078.95896 59914.32467 67676.42912 57613.21781 53618.20755 55575.89162 55260.39925 53895.02121 55552.37362 0.659141514 0.919473924 1.078519616 1.218245499 1.03709732 0.965183017 1.000423348 0.99474416 0.970165948 1 15.76156094 -4.342403848 2.77887516 1.035215274 0.622573304 0.720844809 0.070393105 0.204011397 2.379538775 0.020482239 0.174224627 4.55E-05 4.342403848 -0.41264197 YPPGVVGVAPTGIPAAVEGIVPS(ph)AMSLSHGLPPVAHPPHAPSPGQTVKPEADR ddPTM_HeLa_A485_30min_R1 1 YPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADR 53 1 H0Y8U5;H0Y8W7;Q13363-2;Q13363 H0Y8U5 CTBP1 C-terminal-binding protein 1 1 0 YPPGVVGVAPT(0.013)GIPAAVEGIVPS(0.234)AMS(0.234)LS(0.234)HGLPPVAHPPHAPS(0.234)PGQT(0.05)VKPEADR 42.36 0.0079505 82080000 12538 18925 13192 8083.7 13860 11949 14771 10575 14478 14272 TRUE FALSE FALSE 15327.03484 21138.11412 18072.26976 8525.292062 12480.04973 12574.63116 11615.05518 7981.464669 17383.6018 10714.25306 1.430527612 1.972896665 1.686750319 0.795696351 1.164808192 1.173635819 1.084075121 0.744938973 1.622474447 1 13.38724366 -5.207665183 9.17980633 1.080361997 1.726131013 0.543989485 0.256800861 0.327934077 53.86161651 0.06598273 0.114341811 6.20E-06 5.207665183 0.645769015 YPPYTT(ph)PPR ddPTM_HeLa_A485_30min_R1 1 YPPYTTPPR 9 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 YPPYT(0.027)T(0.973)PPR 87.258 0.019431 1151500000 633660 867010 865810 650830 1011800 883100 1041800 1111300 773550 879980 TRUE FALSE FALSE 774615.4809 968399.2775 1186109.148 686383.1949 911061.6394 929337.7505 819210.9193 838751.9325 928794.3896 660617.1808 1.172563329 1.465900836 1.795456102 1.039002943 1.37910679 1.406771997 1.240069049 1.269648984 1.405949492 1 19.33345497 -12.96977499 0.194687789 3.92E-10 1.424407068 0.233167009 0.191396227 131.4150662 1.856263434 52.1572284 0.511380365 1.07E-13 12.96977499 1.424407068 YPQQYQPS(ph)PLPVHYELLTDGYTR ddPTM_HeLa_A485_30min_R1 1 YPQQYQPSPLPVHYELLTDGYTR 23 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 Y(0.001)PQQY(0.003)QPS(0.996)PLPVHYELLTDGYTR 67.951 0.0064383 76660000 31424 31657 28152 30909 43542 23989 36039 37947 34001 48090 TRUE FALSE FALSE 38414.16039 35359.01077 38566.5963 32597.4804 39206.80559 25245.02695 28338.97324 28640.43875 40824.68882 36102.04803 1.0640438 0.979418418 1.068266162 0.902926072 1.085999486 0.699268555 0.784968576 0.793318948 1.130813653 1 15.13979306 -6.237095457 24.98416594 0.862712258 1.014031802 0.231555308 0.123476374 1088.738588 1117373.135 0.040502552 0.040484218 5.79E-07 6.237095457 0.151319544 YPS(ph)CESVTDEYAGHLIQILK ddPTM_HeLa_A485_30min_R1 2 YPSCESVTDEYAGHLIQILK 20 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 YPS(0.915)CES(0.03)VT(0.055)DEYAGHLIQILK;Y(0.001)PS(0.712)CES(0.129)VT(0.158)DEYAGHLIQILK ; 178.53 5.73E-19 125078000 95226 79445 77505 172980 120834 96333 146665 123441 96087 243240 TRUE FALSE FALSE 116408.6952 88735.40167 106177.3248 182429.4594 108803.3427 101376.8469 115328.8246 93166.9012 115370.7795 182604.7445 0.637489981 0.485942476 0.581459836 0.999040085 0.595840721 0.555170936 0.631576277 0.510210737 0.631806035 1 17.47836472 -8.080006892 21.19924714 1 0.624413796 0.412101423 0.134253427 14605.40251 3869955.978 0.135991461 0.035112844 8.32E-09 8.080006892 -0.375586204 YPS(ph)LGQKPGGSDFLMK ddPTM_HeLa_A486_30min_R1 2 YPSLGQKPGGSDFLMK 16 1 O43768-2;O43768;A6NMQ3;Q5T5H1;O43768-9;O43768-3;O43768-4;A0A1W2PRU0;O43768-6;O43768-5;O43768-8;O43768-7 O43768-2 ENSA Alpha-endosulfine 1 0 Y(0.001)PS(0.999)LGQKPGGSDFLMK;YPS(1)LGQKPGGSDFLMK ; 98.165 0.00029819 524810000 298260 301832 141188 130978 278707 381157 417172 502340 242510 432300 TRUE FALSE FALSE 277353.5142 277913.7331 195859.7747 304923.4033 243748.9692 334133.7247 312791.1532 387968.148 263530.9621 324049.2662 0.85589922 0.857628028 0.604413573 0.940978533 0.752197257 1.03112014 0.96525802 1.197250506 0.813243508 1 18.30585364 -6.266511464 24.82366472 1.011445325 0.802020552 0.407727843 0.119705554 372.0648771 1820944.509 0.039696412 0.036088768 5.41E-07 6.266511464 -0.209424773 YPS(ph)PQK ddPTM_HeLa_A485_30min_R1 3 YPSPQK 6 0 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 YPS(1)PQK;Y(0.001)PS(0.999)PQK;YPS(1)PQK ;; 82.279 0.019912 1903020000 2939980 2335840 1934910 4470300 3471990 2698230 4283200 3384870 2481010 5886300 TRUE FALSE FALSE 3593968.408 2608996.169 2650713.727 4714501.17 3126306.485 2839505.151 3368059.329 2554725.325 2978925.95 4418953.739 0.813307543 0.590410383 0.599850979 1.066881766 0.707476627 0.642574084 0.76218479 0.578129004 0.674124719 1 22.0752734 -11.10110698 2.459228594 1.508242656 0.713303744 0.277548759 0.13792233 10110805.08 2762267.012 28796918.48 0.035969872 7.92E-12 11.10110698 -0.794938912 YPS(ph)PQK ddPTM_HeLa_A486_30min_R1 2 YPSPQK 6 0 Q9P2N5;U3KPZ7 Q9P2N5 RBM27 RNA-binding protein 27 1 0 YPS(1)PQK;YPS(1)PQK ; 77.318 0.023426 1532330000 2759900 2824000 1440940 1369840 2544580 3543300 4145800 3768900 2343500 4163300 TRUE FALSE FALSE 2566445.262 2600215.955 1998910.558 3189056.748 2225415.049 3106163.672 3108476.99 2910803.745 2546636.467 3120782.581 0.822372336 0.833193562 0.640515802 1.021877258 0.71309519 0.995315627 0.996056889 0.932715967 0.816024955 1 21.57347642 -6.27454082 24.8826976 0.946819575 0.810486056 0.315968839 0.104225005 961.194323 1825527.412 0.035747119 0.03171242 5.31E-07 6.27454082 -0.136333519 YPSS(ph)ISSS(ph)PQKDLTQAK ddPTM_HeLa_A485_30min_R1 1 YPSSISSSPQKDLTQAK 17 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 Y(0.001)PS(0.414)S(0.532)IS(0.06)S(0.138)S(0.855)PQKDLTQAK 103.71 0.0002839 195370000 381450 255140 176520 606830 351150 303720 520200 393700 281740 705760 TRUE FALSE FALSE 466302.2365 284976.4036 241822.0936 639979.5863 316188.273 319622.3096 409055.0204 297144.4577 338282.6337 529827.0206 0.880102785 0.537866875 0.456417065 1.207902884 0.596776421 0.603257851 0.772053905 0.560832963 0.638477504 1 19.0151619 -9.915228926 4.138805598 1.00000961 0.691063904 0.164729 0.205978528 2443736733 5212721464 363270.1162 0.050896788 1.22E-10 9.915228926 -0.308945706 YPSSISS(ph)SPQKDLTQAK ddPTM_HeLa_A486_30min_R1 3 YPSSISSSPQKDLTQAK 17 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 YPSS(0.001)IS(0.09)S(0.454)S(0.454)PQKDLTQAK;YPS(0.001)S(0.009)IS(0.091)S(0.449)S(0.449)PQKDLTQAK;YPSS(0.004)IS(0.059)S(0.611)S(0.326)PQKDLTQAK ;; 159.04 2.16E-09 3382640000 2588740 2244190 1055920 1204250 2034560 2726270 3380610 3319330 1919680 3648490 TRUE FALSE FALSE 2407282.694 2066352.211 1464800.503 2803554.859 1779366.513 2389930.526 2534745.622 2563591.019 2086079.408 2734884.356 0.880213706 0.755553779 0.535598699 1.025109107 0.650618557 0.873868952 0.926820037 0.937367247 0.762766953 1 21.3830484 -6.497161447 22.59756002 0.901351394 0.769101478 0.19676166 0.133234422 378.0342784 332176.0348 0.045731251 0.040122607 3.18E-07 6.497161447 -0.132249916 YPSSISSS(ph)PQK ddPTM_HeLa_A485_30min_R1 2 YPSSISSSPQK 11 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 YPSSIS(0.001)S(0.086)S(0.914)PQK;YPSSIS(0.001)S(0.022)S(0.977)PQK ; 193.14 4.65E-11 799630000 943420 658610 597530 1422750 792690 680410 935050 676690 754160 1695070 TRUE FALSE FALSE 1153280.524 735628.7104 818581.2123 1500471.23 713767.0003 716035.2155 735268.9288 510730.7165 905512.9944 1272520.244 0.906296406 0.578088021 0.643275591 1.179133484 0.560908169 0.562690628 0.57780529 0.401353706 0.711590247 1 20.27925718 YPSSISSS(ph)PQK ddPTM_HeLa_A486_30min_R1 4 YPSSISSSPQK 11 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 YPS(0.015)S(0.013)IS(0.049)S(0.15)S(0.774)PQK;YPSSIS(0.004)S(0.018)S(0.978)PQK;YPSSIS(0.012)S(0.083)S(0.904)PQK;YPSSIS(0.001)S(0.037)S(0.962)PQK ;;; 168.82 1.04E-09 2100520000 3697990 4012200 1880390 1234520 2461490 4352800 4029670 3658540 3365840 4960020 TRUE FALSE FALSE 3438779.997 3694258.66 2608527.367 2874024.949 2152746.972 3815795.792 3021403.944 2825570.307 3657593.721 3717998.708 0.924900805 0.993614832 0.701594479 0.773003214 0.579006918 1.02630369 0.812642548 0.759970761 0.98375336 1 21.82609484 -7.777154919 23.17320103 0.991877359 0.819975933 0.223212921 0.127202159 180.3004053 265841.2018 0.123666557 0.032501165 1.67E-08 7.777154919 -0.171901426 YPSSISSS(ph)PQKDLTQAK ddPTM_HeLa_A485_30min_R1 4 YPSSISSSPQKDLTQAK 17 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 YPSS(0.003)IS(0.074)S(0.062)S(0.862)PQKDLTQAK;YPS(0.001)S(0.005)IS(0.145)S(0.113)S(0.736)PQKDLTQAK;Y(0.005)PS(0.043)S(0.062)IS(0.299)S(0.239)S(0.352)PQKDLTQAK;YPSS(0.002)IS(0.066)S(0.116)S(0.815)PQKDLTQAK ;;; 159.67 6.34E-10 4980700000 2670240 1949420 1388930 4329060 2779830 2531990 3977470 3581250 2349380 5702780 TRUE FALSE FALSE 3264225.676 2177387.711 1902753.005 4565545.586 2503060.365 2664561.081 3127651.042 2702942.822 2820879.016 4281181.898 0.762459002 0.508595001 0.444445728 1.066421772 0.584665736 0.622389131 0.73055785 0.631354352 0.65890193 1 22.0295777 -10.68275586 2.401607731 1.057912125 0.665229432 0.278312457 0.160458666 10593096.01 7921574.259 3728061.483 0.041562937 2.08E-11 10.68275586 -0.392682693 YPSSISSS(ph)PQKDLTQAK ddPTM_HeLa_A486_30min_R1 1 YPSSISSSPQKDLTQAK 17 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 YPSSISS(0.05)S(0.95)PQKDLTQAK 226.29 1.09E-34 2506400000 1353900 1384100 529240 565490 1104400 1599000 2015800 1763400 1068200 2045900 TRUE FALSE FALSE 1258998.602 1274418.875 734175.9015 1316489.298 965875.8539 1401731.637 1511425.519 1361912.315 1160792.436 1533593.323 0.820946846 0.831001841 0.478729198 0.858434422 0.629812245 0.914017827 0.985545187 0.888053106 0.756910205 1 20.54848453 -6.280098038 23.88142028 0.906698613 0.723607732 0.370201376 0.120710173 526.7978836 674251.5906 0.042118892 0.037223322 5.25E-07 6.280098038 -0.183090881 YPTEGISHVTS(ph)PSSDVIQK ddPTM_HeLa_A485_30min_R1 1 YPTEGISHVTSPSSDVIQK 19 0 Q6P2H3-2;Q6P2H3 Q6P2H3-2 CEP85 Centrosomal protein of 85 kDa 1 0 YPTEGISHVT(0.04)S(0.956)PS(0.003)S(0.001)DVIQK 103.26 8.87E-05 196600000 149550 125870 120660 134670 196800 131940 172620 139590 137140 171410 TRUE FALSE FALSE 182816.8816 140589.4016 165297.1551 142026.6811 177205.901 138848.1744 135738.3268 105355.3336 164662.7401 128680.6416 1.420702285 1.092545078 1.284553396 1.103714431 1.377098364 1.079013694 1.054846519 0.818734911 1.279623245 1 16.97343551 -6.449916111 6.540196827 1.0288604 1.239783028 0.350291857 0.142266713 0.272763601 20.15872384 0.047711081 0.041714765 3.55E-07 6.449916111 0.210922628 YQDEDT(ph)PPQEHISPQITNEVIGPELVHVSEK ddPTM_HeLa_A485_30min_R1 1 YQDEDTPPQEHISPQITNEVIGPELVHVSEK 31 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;C9JCP6;A0A590UJ86;A0A590UK13;C9IYP1;A8MUT6;B4E2H8;A0A590UJ95;A0A590UK52;A0A590UJZ4;C9JN61;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 Y(0.035)QDEDT(0.965)PPQEHISPQITNEVIGPELVHVSEK 96.597 0.00043064 50120000 42479 86841 93039 33300 108890 49269 71002 64277 71614 42730 TRUE FALSE FALSE 51928.307 96996.29953 127457.9978 35119.09468 98048.52926 51848.64866 55831.84267 48512.96497 85986.27292 32078.19739 1.618803774 3.02374533 3.973352874 1.094796389 3.056547351 1.616320519 1.740491898 1.512334511 2.680520725 1 14.96930545 -5.959824048 1.154704596 1.745714291 2.717493186 0.166920875 0.854524872 0.851061484 2.399713712 0.383736243 0.460841876 1.10E-06 5.959824048 0.971778895 YQDEDT(ph)PPQEHISPQITNEVIGPELVHVSEK ddPTM_HeLa_A486_30min_R1 1 YQDEDTPPQEHISPQITNEVIGPELVHVSEK 31 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;C9JUA9;A0A590UJ64;E7EQD7;C9JCP6;A0A590UJ86;A0A590UK13;C9IYP1;A8MUT6;B4E2H8;A0A590UJ95;A0A590UK52;A0A590UJZ4;C9JN61;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 Y(0.028)QDEDT(0.963)PPQEHIS(0.009)PQIT(0.001)NEVIGPELVHVSEK 67.279 0.0043896 56262000 27297 38235 37430 2939.5 50452 23438 34478 26798 34963 14872 TRUE FALSE FALSE 25383.62126 35205.11935 51923.89841 6843.304554 44123.83971 20546.45786 25851.23973 20696.6804 37993.62099 11147.9544 2.276975699 3.157989178 4.657706387 0.613861908 3.958021188 1.84306978 2.318922271 1.856545125 3.408124902 1 13.44449139 -9.840248573 0.192301572 3.47E-10 3.19364911 0.16311209 1.11194225 33.35344394 1.522911749 24.87028266 3.742498711 1.44E-10 9.840248573 3.19364911 YQDEVFGGFVTEPQEES(ph)EEEVEEPEER ddPTM_HeLa_A485_30min_R1 7 YQDEVFGGFVTEPQEESEEEVEEPEER 27 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER ;;;;;; 235.67 8.96E-50 12396960000 2559731 3325400 3506710 2773360 4137930 3206470 3995620 4411340 3171760 3559310 TRUE FALSE FALSE 3129134.33 3714276.603 4803987.955 2924861.634 3725943.16 3374355.811 3141923.146 3329451.948 3808303.139 2672039.521 1.171065886 1.390053019 1.797873092 1.094617655 1.394419181 1.262839035 1.175852049 1.246033946 1.42524207 1 21.34950992 YQDEVFGGFVTEPQEES(ph)EEEVEEPEER ddPTM_HeLa_A486_30min_R1 8 YQDEVFGGFVTEPQEESEEEVEEPEER 27 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVT(0.002)EPQEES(0.998)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER ;;;;;;; 245.41 3.76E-50 15537270000 5675946 6507120 5934230 2303029 7945480 5713240 6874350 7017710 5643800 6355740 TRUE FALSE FALSE 5278091.496 5991472.113 8232122.78 5361567.901 6948883.81 5008398.537 5154314.921 5419930.629 6133009.128 4764221.335 1.107860262 1.257597347 1.727905192 1.125381783 1.458556041 1.051252279 1.08187982 1.137631996 1.287305668 1 22.18380901 -6.269433539 24.88578274 1.118357566 1.341265901 0.280635721 0.17891024 802.5448866 2498311.61 0.062479702 0.056092536 5.38E-07 6.269433539 0.222908335 YQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_HeLa_A485_30min_R1 2 YQEDSDPERSDYEEQQLQK 19 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 YQEDS(1)DPERS(1)DYEEQQLQK;YQEDS(1)DPERS(1)DYEEQQLQK ; 189.62 2.43E-18 1253200000 1086460 902030 744150 1354200 1003750 926640 1204260 953640 848540 1603760 TRUE FALSE FALSE 1328139.279 1007514.562 1019442.052 1428176.517 903813.1256 975157.4375 946960.0131 719758.2948 1018834.195 1203972.147 1.103131233 0.836825473 0.846732256 1.186220562 0.75069272 0.809950164 0.786529834 0.597819722 0.846227379 1 20.19937059 -5.832080087 24.99999955 0.778397089 0.971606481 0.318708127 0.136111862 54.89457643 19426.24673 0.041321934 0.046854683 1.47E-06 5.832080087 0.193209392 YQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_HeLa_A486_30min_R1 1 YQEDSDPERSDYEEQQLQK 19 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 YQEDS(1)DPERS(1)DYEEQQLQK 131.04 3.98E-06 575420000 379480 468670 234990 154150 364950 517530 460920 462300 405570 568650 TRUE FALSE FALSE 352880.4116 431530.8823 325984.4213 358868.9903 319174.568 453682.4105 345592.9409 357044.3819 440725.1341 426256.3387 0.827859622 1.012374112 0.764761463 0.841908865 0.748785505 1.064341734 0.810763171 0.837628322 1.033943883 1 18.70136176 -6.244976125 24.98284386 0.930526443 0.844784075 0.220677474 0.100200828 1658.83844 2517273.56 0.033263601 0.033171629 5.69E-07 6.244976125 -0.085742368 YQEDS(ph)DPERSDYEEQQLQK ddPTM_HeLa_A485_30min_R1 1 YQEDSDPERSDYEEQQLQK 19 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 YQEDS(0.999)DPERS(0.001)DYEEQQLQK 122.41 4.07E-06 549090000 95983 119140 102770 183090 146370 134090 213190 186390 117150 247270 TRUE FALSE FALSE 117334.0872 133072.3866 140788.8996 193091.7431 131796.8889 141110.7451 167640.2149 140677.5603 140660.9304 185630.1397 0.632085325 0.716868429 0.758437719 1.040196077 0.709997251 0.760171518 0.903087264 0.757837927 0.757748341 1 17.50207145 -13.99999993 0.026742605 2.081638624 3.24E-12 0.281451284 0.106642356 2891.403309 5.819824059 337.1705393 150.4208823 1.00E-14 13.99999993 -2.081638624 YQEQGGEAS(ph)PQR ddPTM_HeLa_A485_30min_R1 5 YQEQGGEASPQR 12 0 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR ;;;; 250.05 1.77E-28 4646780000 2154850 2756950 2719230 2350160 3122770 2271090 2631620 2425160 2435620 2891770 TRUE FALSE FALSE 2634188.948 3079351.32 3725186.334 2478543.29 2811856.054 2390000.761 2069352.889 1830385.707 2924426.593 2170904.958 1.213405929 1.418464364 1.715960121 1.141709719 1.295246042 1.100923719 0.953221319 0.8431441 1.347100241 1 21.04986514 -5.950465172 1.424690205 1.027157815 1.425478479 0.430442121 0.182723375 0.373544151 1.567268263 0.074682263 0.0874056 1.12E-06 5.950465172 0.398320664 YQEQGGEAS(ph)PQR ddPTM_HeLa_A486_30min_R1 6 YQEQGGEASPQR 12 0 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR ;;;;; 252.13 2.36E-29 6666671000 3793400 4199880 3299570 1130946 4122730 3820370 3864810 3901520 3239880 3805260 TRUE FALSE FALSE 3527502.249 3867066.213 4577251.87 2632899.443 3605618.76 3349051.592 2897793.66 3013229.066 3520715.407 2852398.128 1.236679485 1.355724566 1.604703013 0.923047669 1.264065744 1.174117862 1.015914865 1.056384463 1.234300139 1 21.44374393 -5.264840854 24.99999437 1.104748968 1.394704573 0.528993365 0.131067348 237.7889906 1747693.958 0.036349113 0.056489573 5.43E-06 5.264840854 0.289955605 YQEQGGEAS(ph)PQRTWEQQQEVVSR ddPTM_HeLa_A485_30min_R1 4 YQEQGGEASPQRTWEQQQEVVSR 23 1 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 YQEQGGEAS(0.998)PQRT(0.002)WEQQQEVVSR;YQEQGGEAS(0.845)PQRT(0.155)WEQQQEVVSR;YQEQGGEAS(1)PQRTWEQQQEVVSR;YQEQGGEAS(1)PQRTWEQQQEVVSR ;;; 296.02 1.98E-89 2757430000 295236 587510 552450 269006 778920 657100 808690 1282540 504864 459030 TRUE FALSE FALSE 360910.2296 656214.1838 756824.2444 283701.1166 701367.9898 691504.7399 635906.7751 967995.0541 606185.5739 344602.2688 1.047324009 1.904265419 2.196225367 0.82327118 2.035297075 2.006674948 1.845335428 2.809021129 1.759087588 1 18.39457267 -5.894369008 20.12387014 2.001642049 1.554469497 0.102349672 0.553702107 5.781106045 1077.838683 0.167322213 0.189726192 1.28E-06 5.894369008 -0.447172552 YQEQGGEAS(ph)PQRTWEQQQEVVSR ddPTM_HeLa_A486_30min_R1 4 YQEQGGEASPQRTWEQQQEVVSR 23 1 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 YQEQGGEAS(0.999)PQRT(0.001)WEQQQEVVSR;YQEQGGEAS(0.998)PQRT(0.002)WEQQQEVVSR;YQEQGGEAS(0.99)PQRT(0.01)WEQQQEVVSR;YQEQGGEAS(0.979)PQRT(0.021)WEQQQEVVSR ;;; 251.07 5.48E-50 2018740000 456276 437349 489185 214224 865000 423478 623047 728090 361549 505092 TRUE FALSE FALSE 424293.4086 402691.8724 678610.5328 498724.2983 756503.6342 371233.59 467154.0507 562319.8011 392888.3584 378613.6756 1.120649982 1.063595687 1.792356105 1.31723794 1.998088508 0.980507609 1.233854139 1.485207316 1.037702502 1 18.530367 YQEQGGEAS(ph)PQSR ddPTM_HeLa_A485_30min_R1 2 YQEQGGEASPQSR 13 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3 B4DDD6 DBNL Drebrin-like protein 1 0 YQEQGGEAS(1)PQSR;YQEQGGEAS(1)PQSR ; 236.31 8.14E-35 1398230000 933060 1269110 1254250 936820 1570500 1149770 1404490 1576970 1177490 1221200 TRUE FALSE FALSE 1140615.978 1417521.375 1718249.269 987996.1044 1414135.506 1209970.179 1104409.238 1190215.635 1413801.442 916777.3145 1.244158161 1.546200317 1.874227516 1.077683848 1.542507088 1.319808159 1.204664667 1.298260347 1.542142699 1 19.80621182 -5.27510149 24.92370836 1.305018379 1.553995868 0.245017397 0.215937465 1116.627037 2037054.125 0.059658456 0.089039202 5.31E-06 5.27510149 0.248977489 YQEQGGEAS(ph)PQSR ddPTM_HeLa_A486_30min_R1 2 YQEQGGEASPQSR 13 0 B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3 B4DDD6 DBNL Drebrin-like protein 1 0 YQEQGGEAS(0.994)PQS(0.006)R;YQEQGGEAS(0.998)PQS(0.002)R ; 179.9 4.75E-17 1685270000 784030 885790 784440 239424 1023140 737480 778890 837050 728900 657250 TRUE FALSE FALSE 729073.5457 815596.7744 1088196.176 557391.1718 894808.2408 646497.2157 584003.4837 646471.9877 792081.6389 492670.322 1.479840602 1.655461549 2.20877152 1.131367462 1.816241411 1.312230891 1.185383932 1.312179684 1.607731587 1 18.91026304 -6.089950781 1.211915226 1.288950808 1.70578333 0.264885241 0.295207838 0.652941404 1.992945441 0.136044892 0.143133114 8.13E-07 6.089950781 0.416832522 YQES(ph)PGIQMK ddPTM_HeLa_A485_30min_R1 2 YQESPGIQMK 10 0 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 YQES(1)PGIQMK;YQES(1)PGIQMK ; 101.39 0.014366 399690000 1011790 595870 516360 838550 734490 777920 936800 973010 595160 1064420 TRUE FALSE FALSE 1236859.195 665551.8131 707383.0515 884357.8632 661361.5966 818650.6883 736645.027 734377.7719 714603.1529 799079.6832 1.547854639 0.832897929 0.885247199 1.106720496 0.827654126 1.024491932 0.921866796 0.919029463 0.89428272 1 19.60797985 -4.255591546 24.99284129 0.935049434 1.547854905 0.832194195 0.082601941 239.2394211 1022447.696 0.019676307 0.17184564 5.55E-05 4.255591546 0.612805472 YQES(ph)PGIQMK ddPTM_HeLa_A486_30min_R1 3 YQESPGIQMK 10 0 E9PJ60;Q9UHI6 E9PJ60 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 YQES(1)PGIQMK;YQES(1)PGIQMK;YQES(1)PGIQMK ;; 95.631 0.00044823 1860460000 1246100 1385110 895300 506350 1342850 1507150 1554370 1545640 1173770 1645610 TRUE FALSE FALSE 1158754.825 1275348.839 1241984.137 1178808.39 1174417.231 1321213.157 1165450.186 1193731.513 1275513.329 1233538.545 0.939374639 1.033894599 1.006846638 0.955631581 0.952071775 1.071075697 0.944802406 0.967729398 1.034027947 1 20.23437137 YQGVNLYVK ddPTM_HeLa_A485_30min_R1 1 YQGVNLYVK 9 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;H0YAP2;A0A6I8PS38;A0A6I8PLA1;Q4VXU2;Q4VXU2-2 P11940 PABPC1;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 1-like 0 0 127.56 0.0027567 30475000 17396 21021 18189 20087 30991 17797 25671 27838 20079 32232 FALSE FALSE TRUE 21265.68018 23479.22309 24917.86801 21184.30195 27905.42722 18728.8234 20186.18114 21010.68685 24108.67112 24197.15559 0.878850413 0.970329881 1.029785006 0.875487281 1.153252378 0.774009298 0.834237771 0.86831226 0.996343187 1 14.56254985 -6.291858221 24.99243647 0.882578629 0.977706614 0.16031655 0.09739717 1197.30438 983714.0958 0.033465302 0.029517128 5.11E-07 6.291858221 0.095127985 YQLFAFISHMGTSTMCGHYVCHIK ddPTM_HeLa_A485_30min_R1 5 YQLFAFISHMGTSTMCGHYVCHIK 24 0 P45974;P45974-2 P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 0 ;;;; ;;;; 188.72 7.59E-28 133638000 67587 49942 53765.3 55034.3 67680.9 46850.6 83324 66948 44814.6 90028 FALSE FALSE TRUE 82621.49498 55782.28246 73655.32183 58040.68445 60942.35195 49303.62497 65521.14671 50528.89803 53808.47916 67585.67644 1.22247049 0.825356576 1.089806683 0.858771969 0.901705142 0.729498136 0.969453147 0.747627318 0.796152114 1 16.04442991 -1 0.677911091 0.849567884 35.78825384 0.426633093 0.113126482 242.203572 1.40246657 0.043443135 12773.91823 0.1 1 34.93868596 YQLFAFISHMGTSTMCGHYVCHIK ddPTM_HeLa_A486_30min_R1 6 YQLFAFISHMGTSTMCGHYVCHIK 24 0 P45974;P45974-2 P45974 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 0 ;;;;; ;;;;; 238.03 1.30E-50 136017300 74019.3 99497 102933.3 74329.6 138363 130829 159763 129148 86228.3 139132 FALSE FALSE TRUE 68830.92931 91612.49536 142791.8304 173043.0652 121008.2224 114688.6482 119788.6076 99743.81968 93702.63847 104292.4416 0.659980035 0.878419317 1.369148408 1.65921003 1.160277969 1.099683221 1.148583788 0.956385891 0.898460493 1 16.67027508 -7.264859391 4.42645087 0.941637525 1.158578313 0.101692002 0.251160079 0.49740723 25.81876435 0.15293796 0.076236893 5.43E-08 7.264859391 0.216940788 YQLLQLVEPFGVISNHLILNK ddPTM_HeLa_A485_30min_R1 4 YQLLQLVEPFGVISNHLILNK 21 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;B3KM87;P43243-2;H0Y8T4;D6RBI2;D6RBK5;D6RE02;D6RIA2 D6REM6 MATR3 Matrin-3 0 0 ;;; ;;; 301.92 5.02E-78 63398400 75338.2 123357.4 120048.3 29516.7 134708 127283.9 109269.4 145545 91011.1 69977.5 FALSE FALSE TRUE 92096.92268 137782.9749 164459.1618 31129.12258 121295.9985 133948.2882 85923.10004 109849.8605 109276.193 52533.39709 1.753111883 2.622769181 3.130564001 0.592558721 2.30893118 2.549773965 1.635590021 2.091048107 2.080128052 1 15.68094726 -10.82718416 0.304843076 3.01E-13 2.191160574 0.202527998 0.646895762 49.19914909 2.489103272 37.16414114 0.680797891 1.49E-11 10.82718416 2.191160574 YQLLQLVEPFGVISNHLILNK ddPTM_HeLa_A486_30min_R1 2 YQLLQLVEPFGVISNHLILNK 21 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;B3KM87;P43243-2;H0Y8T4;D6RBI2;D6RBK5;D6RE02;D6RIA2 D6REM6 MATR3 Matrin-3 0 0 ; ; 292.97 2.37E-77 42373800 33881.2 50659 66495 3969.96 70462 37847.1 41985.4 45067 58396 23820.3 FALSE FALSE TRUE 31506.30284 46644.59634 92243.6448 9242.267511 61623.99893 33177.9096 31480.20884 34806.22791 63457.8123 17855.54184 1.76451116 2.61233161 5.166107287 0.517613388 3.45125337 1.858129532 1.763049765 1.949323534 3.553956126 1 14.12408429 -5.278322134 24.99914988 2.095905728 3.124118638 0.165728895 1.188439745 1587.487726 2350669.85 0.326872775 0.48624711 5.27E-06 5.278322134 1.02821291 YQPFKPLSIGGIIILK ddPTM_HeLa_A485_30min_R1 1 YQPFKPLSIGGIIILK 16 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 130.29 9.11E-06 26897000 19084 19947 22891 18598 27404 16536 25710 23871 13780 28333 FALSE FALSE TRUE 23329.16996 22279.62813 31359.33347 19613.96165 24675.56154 17401.79939 20216.84847 18016.59982 16545.5196 21270.10453 1.096805609 1.047462089 1.474338475 0.92213753 1.160105325 0.818134174 0.950481858 0.847038612 0.777876741 1 14.3765395 -6.060990635 1.510292118 0.868845821 1.169109534 0.42211661 0.147344765 0.368959557 1.707546242 0.059177409 0.0628213 8.69E-07 6.060990635 0.300263713 YQPFKPLSIGGIIILK ddPTM_HeLa_A486_30min_R1 2 YQPFKPLSIGGIIILK 16 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 ; ; 224.64 5.53E-25 42304000 96146 69123 40838 49167 71062 75979 107902 88726 58948 121562 FALSE FALSE TRUE 89406.6619 63645.44174 56651.56728 114463.2608 62148.74133 66605.48348 80903.77833 68525.02667 64057.6601 91122.08396 0.981174464 0.698463413 0.62171062 1.256152798 0.682038191 0.730947763 0.88786137 0.752013384 0.702987216 1 16.47551312 YQPLASTAS(ph)DNDFVT(ph)PEPR ddPTM_HeLa_A485_30min_R1 1 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 2 0 YQPLAS(0.003)T(0.013)AS(0.984)DNDFVT(1)PEPR 143.47 6.59E-08 83548000 54009 67305 57909 53381 88675 63430 71299 84710 48320 68974 TRUE FALSE FALSE 66023.11572 75175.73427 79331.94889 56297.06886 79846.20564 66751.09672 56065.38619 63934.73968 58017.38078 51780.05117 1.275068568 1.451828119 1.532094834 1.087234709 1.542026395 1.28912767 1.082760347 1.234736896 1.120458158 1 15.66010877 -7.123934495 0.56607665 1.016052619 1.402443228 0.449887091 0.136841673 0.760213094 0.514116642 0.131607083 0.083849308 7.52E-08 7.123934495 0.386390609 YQPLASTAS(ph)DNDFVT(ph)PEPR ddPTM_HeLa_A486_30min_R1 1 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 2 0 YQPLAS(0.302)T(0.268)AS(0.429)DNDFVT(1)PEPR 70.917 0.013845 121580000 79888 104380 83685 33004 105390 88056 109810 117850 87626 109430 TRUE FALSE FALSE 74288.26374 96108.54865 116090.0732 76834.97993 92171.00348 77192.54601 82334.37655 91018.12765 95221.49223 82028.01573 0.905645018 1.171655169 1.415249072 0.936691925 1.123652726 0.941050997 1.003734832 1.109598066 1.160841103 1 16.32382911 YQPLASTAS(ph)DNDFVTPEPR ddPTM_HeLa_A485_30min_R1 5 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLAST(0.026)AS(0.974)DNDFVTPEPR;YQPLAS(0.001)T(0.012)AS(0.988)DNDFVTPEPR;YQPLAST(0.097)AS(0.902)DNDFVTPEPR;YQPLAS(0.008)T(0.097)AS(0.895)DNDFVTPEPR;YQPLAS(0.001)T(0.015)AS(0.984)DNDFVTPEPR ;;;; 248.78 4.02E-46 1183645000 447625 546981 535741 595502 718143 546142 788458 839047 530170 842815 TRUE FALSE FALSE 547197.637 610945.6698 733933.8899 628032.7664 646642.1614 574737.1506 619997.5072 633269.4077 636570.256 632716.7314 0.86483826 0.96559114 1.159972312 0.992597058 1.022008949 0.908364078 0.979897443 1.000873497 1.006090442 1 19.27120022 YQPLASTAS(ph)DNDFVTPEPR ddPTM_HeLa_A486_30min_R1 3 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLASTAS(1)DNDFVTPEPR;YQPLAST(0.004)AS(0.996)DNDFVTPEPR;YQPLASTAS(1)DNDFVTPEPR ;; 371.36 5.66E-130 1404370000 424170 422410 334194 201616 422262 417230 570160 507480 354356 543110 TRUE FALSE FALSE 394437.8734 388936.6932 463602.8668 469372.2371 369297.9625 365756.4047 427499.9375 391937.8822 385071.8634 407111.7209 0.968868871 0.955356167 1.138760795 1.152932261 0.907116999 0.898417771 1.050080151 0.962728072 0.945862876 1 18.63506523 -5.780757467 24.99980987 0.960192189 1.052990858 0.292636479 0.071037433 347.6334785 449875.3518 0.024064156 0.027326254 1.66E-06 5.780757467 0.092798669 YQPLASTASDNDFVT(ph)PEPR ddPTM_HeLa_A485_30min_R1 4 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLASTASDNDFVT(1)PEPR;YQPLASTASDNDFVT(1)PEPR;YQPLASTASDNDFVT(1)PEPR;YQPLASTASDNDFVT(1)PEPR ;;; 347.14 7.78E-115 1002140000 383557 505252 508982 333916 600900 437636 538903 596833 432108 496738 TRUE FALSE FALSE 468877.9314 564336.8263 697275.6223 352156.9856 541072.2861 460549.9442 423761.9716 450458.771 518828.1121 372910.3584 1.257347566 1.513331056 1.869821008 0.944347556 1.450944641 1.235015155 1.136364175 1.207954568 1.39129445 1 18.50846935 -5.267506637 24.99989778 1.213668351 1.543482994 0.390408333 0.200445113 514.8156399 2121277.721 0.055162816 0.084223095 5.40E-06 5.267506637 0.329814643 YQPLASTASDNDFVT(ph)PEPR ddPTM_HeLa_A486_30min_R1 3 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLASTASDNDFVT(1)PEPR;YQPLASTASDNDFVT(1)PEPR;YQPLASTASDNDFVT(1)PEPR ;; 351.02 5.93E-115 852720000 495366 496441 460549 173632 576960 454798 511749 570587 393589 497520 TRUE FALSE FALSE 460643.4015 457101.2072 638885.9067 404224.0709 504592.2969 398689.6468 383703.9875 440676.7959 427705.6114 372937.7537 1.235175031 1.225676946 1.713116734 1.083891526 1.353020154 1.069051451 1.028868715 1.181636323 1.146855225 1 18.50857533 -6.027945809 1.600559961 1.093398219 1.350439401 0.332243502 0.161694721 0.462069415 2.400385186 0.064171549 0.06970575 9.38E-07 6.027945809 0.257041182 YQQETSVSQLPGRPKS(ph)PLSK ddPTM_HeLa_A485_30min_R1 2 YQQETSVSQLPGRPKSPLSK 20 2 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 YQQETSVSQLPGRPKS(0.999)PLS(0.001)K;YQQETSVSQLPGRPKS(1)PLSK ; 205.02 9.44E-27 1954300000 665540 676960 478820 1085120 1121600 1024790 1592520 1687930 676630 1648150 TRUE FALSE FALSE 813587.0769 756124.5832 655955.4434 1144397.358 1009929.566 1078446.42 1252265.092 1273962.521 812423.4346 1237296.537 0.657552214 0.61111024 0.530152169 0.924917612 0.816238901 0.871615161 1.012097791 1.02963395 0.656611742 1 20.23875987 -5.267053208 24.97468247 0.902622146 0.600755406 0.624059457 0.107405306 286.4642438 1274416.81 0.030004311 0.045948386 5.41E-06 5.267053208 -0.301866739 YQQETSVSQLPGRPKS(ph)PLSK ddPTM_HeLa_A486_30min_R1 2 YQQETSVSQLPGRPKSPLSK 20 2 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 YQQETSVSQLPGRPKS(0.999)PLS(0.001)K;YQQETSVSQLPGRPKS(1)PLSK ; 219.64 1.15E-35 2050120000 907070 780320 441940 526020 1057640 1109140 1460190 1468380 697540 1490790 TRUE FALSE FALSE 843489.0771 718484.6013 613071.0036 1224601.144 924980.9291 972305.5837 1094835.018 1134061.929 758003.3288 1117486.481 0.754809201 0.642947019 0.548616036 1.095853207 0.82773344 0.870082637 0.979729989 1.014832795 0.678310961 1 20.09182595 -5.251495412 24.96155522 0.920500333 0.648206374 0.530314524 0.118570244 527.1970695 1323378.688 0.031402994 0.053567402 5.60E-06 5.251495412 -0.27229396 YQQITPVNQS(ph)R ddPTM_HeLa_A485_30min_R1 4 YQQITPVNQSR 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 YQQITPVNQS(1)R;YQQITPVNQS(1)R;YQQITPVNQS(1)R;YQQIT(0.001)PVNQS(0.999)R ;;; 131.35 3.91E-05 1558500000 1274630 1333620 1328200 1186600 1774870 1136400 1770420 1648190 1095810 1447070 TRUE FALSE FALSE 1558167.046 1489575.258 1819556.451 1251420.953 1598157.711 1195900.147 1392155.304 1243968.818 1315729.016 1086342.08 1.434324486 1.371184349 1.674938754 1.151958463 1.471136707 1.10085043 1.281507298 1.145098621 1.211155344 1 20.05104704 -6.374014838 0.31196508 1.004549386 1.5623185 0.507861962 0.135721571 1.736712832 0.373893864 0.177448873 0.347610469 4.23E-07 6.374014838 0.557769114 YQQITPVNQS(ph)R ddPTM_HeLa_A486_30min_R1 4 YQQITPVNQSR 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 YQQITPVNQS(1)R;YQQITPVNQS(1)R;YQQIT(0.001)PVNQS(0.999)R;YQQITPVNQS(1)R ;;; 124.42 6.53E-05 1508830000 973990 1181140 996630 418930 1202740 1106200 1304070 1251370 857210 1122120 TRUE FALSE FALSE 905718.3307 1087542.165 1382551.827 975290.2115 1051881.134 969728.291 977777.893 966460.3682 931513.653 841133.8482 1.076782646 1.292947807 1.643676366 1.159494667 1.250551427 1.152882259 1.162452201 1.148997119 1.107449968 1 19.68197587 -6.10087633 1.324364017 1.113934991 1.322518608 0.277979272 0.14209895 0.608510243 2.188106977 0.065644204 0.067909525 7.93E-07 6.10087633 0.208583617 YQQMMEEK ddPTM_HeLa_A485_30min_R1 1 YQQMMEEK 8 0 Q5T8M0;H3BNS1;Q9H0R5-4;Q9H0R5 Q5T8M0 GBP3 Guanylate-binding protein 3 0 0 60.788 0.029452 31818000 28622 22692 32805 59705 54037 29815 40508 31416 37665 84428 FALSE FALSE TRUE 34988.86516 25345.63201 44940.93463 62966.53297 48656.88654 31376.0673 31853.13488 23711.17674 45224.02002 63381.65338 0.552034592 0.399889095 0.709052734 0.993450464 0.767680929 0.495033904 0.502560807 0.374101581 0.713519096 1 15.95177767 -8.017519083 23.89875888 1.000000018 0.604271899 0.322365467 0.175755233 874.4125353 1192835.97 0.190531272 0.049194963 9.60E-09 8.017519083 -0.395728119 YQQMMEEK ddPTM_HeLa_A486_30min_R1 2 YQQMMEEK 8 0 Q5T8M0;H3BNS1;Q9H0R5-4;Q9H0R5 Q5T8M0 GBP3 Guanylate-binding protein 3 0 0 ; ; 66.993 0.025252 97050000 87752 243870 175576 91175 278560 276420 302080 289180 213480 197540 FALSE FALSE TRUE 81601.03795 224544.853 243563.7293 212260.0077 243620.4073 242318.1108 226496.3889 223340.0268 231984.6183 148074.6982 0.551080225 1.516429584 1.644870678 1.433465746 1.645253445 1.636458583 1.529608985 1.508292973 1.566672909 1 17.17596562 -4.261623328 7.806072292 1.526850682 0.542233821 0.708935423 0.181161447 0.044909938 30.91343597 0.04076639 0.234367157 5.47E-05 4.261623328 -0.98461686 YQVFFFGTHETAFLGPK ddPTM_HeLa_A485_30min_R1 2 YQVFFFGTHETAFLGPK 17 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 ; ; 214.22 4.93E-25 140291000 147297 147124 145879 122609 224700 143436 198428 162579 138441 219840 FALSE FALSE TRUE 180062.7095 164328.872 199845.7126 129306.8192 202328.079 150946.0872 156032.2368 122706.2453 166224.8388 165037.9339 1.091038316 0.995703643 1.210907747 0.783497564 1.225948934 0.914614499 0.945432563 0.743503281 1.00719171 1 17.33243814 -6.473414425 24.94790524 0.906566413 1.052598106 0.20761695 0.133864719 541.5696899 273147.1105 0.044367795 0.039127976 3.36E-07 6.473414425 0.146031693 YQVFFFGTHETAFLGPK ddPTM_HeLa_A486_30min_R1 2 YQVFFFGTHETAFLGPK 17 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 ; ; 235.16 2.96E-33 106389000 168507 172839 128130 34736 186793 168409 195779 176105 171021 150634 FALSE FALSE TRUE 156695.5295 159142.6082 177745.3674 80867.16346 163363.6802 147632.4098 146793.0235 136009.7358 185845.238 112914.2659 1.387738991 1.409410997 1.574162184 0.716181988 1.44679398 1.307473494 1.300039656 1.204539876 1.64589688 1 16.78486825 YQWMLYK ddPTM_HeLa_A486_30min_R1 1 YQWMLYK 7 0 G3V533;Q6ZMZ3-2;Q6ZMZ3 G3V533 SYNE3 Nesprin-3 0 0 60.151 0.033738 43842000 76490 133240 106870 62056 219420 137280 181540 189520 117490 120640 FALSE FALSE TRUE 71128.44599 122681.5771 148252.9261 144469.5041 191898.2976 120343.7894 136116.7719 146370.4332 127674.1278 90430.95877 0.786549728 1.356632494 1.639404559 1.597566874 2.122042055 1.330780863 1.505201025 1.618587652 1.411840918 1 16.46452914 -4.30619048 2.652014966 1.565316576 0.671818285 0.400012338 0.269004987 0.381541485 3.792144543 0.067688772 0.71921486 4.94E-05 4.30619048 -0.893498291 YQYGGLNSGRPVT(ph)PPR ddPTM_HeLa_A485_30min_R1 5 YQYGGLNSGRPVTPPR 16 1 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 0 YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNS(0.001)GRPVT(0.999)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR ;;;; 166.28 6.49E-12 11230620000 1594037 1804117 1859808 1738253 2447001 1758104 2168111 1961909 1724747 2429970 TRUE FALSE FALSE 1948625.031 2015092.789 2547828.372 1833209.36 2203368.988 1850155.607 1704876.373 1480747.742 2070887.903 1824223.199 1.068194414 1.104630612 1.396664823 1.00492602 1.207839583 1.014215589 0.934576632 0.811714127 1.135216296 1 20.79885083 -6.420846676 4.071013672 0.956252105 1.158057321 0.345395391 0.122278847 0.253715826 7.354954097 0.044441035 0.038253758 3.79E-07 6.420846676 0.201805216 YQYGGLNSGRPVT(ph)PPR ddPTM_HeLa_A486_30min_R1 7 YQYGGLNSGRPVTPPR 16 1 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 0 YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNS(0.002)GRPVT(0.998)PPR;YQYGGLNSGRPVT(1)PPR;YQYGGLNSGRPVT(1)PPR ;;;;;; 204.63 3.33E-25 20219610000 4264150 4872500 4122810 1439680 5231280 4812500 5290180 5059110 4444920 5374480 TRUE FALSE FALSE 3965255.105 4486385.355 5719272.445 3351647.797 4575124.083 4218782.68 3966521.01 3907261.093 4830209.244 4028675.226 0.984257822 1.113613062 1.41964098 0.831947876 1.135639838 1.047188578 0.984572046 0.969862516 1.198957219 1 21.94187408 -5.276841929 24.99486824 1.026740319 1.16661491 0.199026972 0.136269523 1342.427117 2178453.876 0.03788338 0.056420971 5.29E-06 5.276841929 0.139874591 YQYGGLNSGRPVT(ph)PPRTANPPK ddPTM_HeLa_A485_30min_R1 2 YQYGGLNSGRPVTPPRTANPPK 22 2 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 0 YQYGGLNS(0.011)GRPVT(0.977)PPRT(0.012)ANPPK;YQYGGLNSGRPVT(1)PPRTANPPK ; 171.73 3.98E-14 2839000000 1123000 2006570 1374130 1012380 2742000 2756390 3686400 5698200 1548830 1744000 TRUE FALSE FALSE 1372807.476 2241220.907 1882477.869 1067683.756 2468996.852 2900710.318 2898770.525 4300707.516 1859665.974 1309252.896 1.048542631 1.711831926 1.437826011 0.815490849 1.885805913 2.21554623 2.214064627 3.284856218 1.420402414 1 20.32031237 -5.954195465 6.599730134 2.168384528 1.300269339 0.255420358 0.605256395 0.237653099 25.14688799 0.183414496 0.207287012 1.11E-06 5.954195465 -0.868115189 YQYGGLNSGRPVT(ph)PPRTANPPK ddPTM_HeLa_A486_30min_R1 2 YQYGGLNSGRPVTPPRTANPPK 22 2 P62140 P62140 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit 1 0 YQYGGLNSGRPVT(1)PPRTANPPK;YQYGGLNS(0.021)GRPVT(0.975)PPRT(0.004)ANPPK ; 147.17 1.61E-09 2329700000 1149570 866220 790870 525770 1762740 1052750 1583570 1730480 787110 1480900 TRUE FALSE FALSE 1068991.079 797577.5725 1097116.044 1224019.131 1541640.712 922872.4086 1187344.037 1336487.48 855337.3286 1110073.001 0.962991694 0.718491101 0.988327834 1.10264742 1.388774172 0.831361908 1.069608968 1.203963594 0.770523495 1 20.08222312 -4.959775425 6.851798876 1.065015265 0.841541711 0.185982976 0.173510884 0.289747045 36.47848329 0.044786243 0.093542134 1.10E-05 4.959775425 -0.223473554 YRCS(ph)PER ddPTM_HeLa_A485_30min_R1 2 YRCSPER 7 1 A1L390-3;A1L390;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 YRCS(1)PER;YRCS(1)PER ; 96.89 0.002551 953510000 353260 323530 304100 369500 438710 342710 455920 422300 330160 453600 TRUE FALSE FALSE 431841.4683 361364.0192 416599.2447 389684.8494 395030.492 360653.7657 358508.9675 318730.2629 396420.0836 340525.8679 1.268160539 1.061194033 1.2233997 1.144361959 1.160060158 1.059108278 1.05280979 0.935994275 1.16414088 1 18.37740487 -6.313193769 2.344673522 1.033110464 1.169784481 0.441192539 0.072867631 0.286375322 3.093488687 0.026964403 0.024050014 4.86E-07 6.313193769 0.136674018 YRCS(ph)PER ddPTM_HeLa_A486_30min_R1 2 YRCSPER 7 1 A1L390-3;A1L390;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 YRCS(1)PER;YRCS(1)PER ; 88.392 0.0034862 798510000 294880 315130 266990 150226 371050 294580 348740 324260 266460 331180 TRUE FALSE FALSE 274210.4348 290157.9511 370375.6782 349733.72 324509.4491 258237.7147 261481.5634 250433.0765 289556.9673 248250.3724 1.104572098 1.168811746 1.491944099 1.408794342 1.307186152 1.040230926 1.053297769 1.00879235 1.166390868 1 17.92143636 -6.259563973 24.1738631 1.054264107 1.306304209 0.544970574 0.11061182 90.00179609 1160120.676 0.040833009 0.038858826 5.50E-07 6.259563973 0.252040102 YRDVS(ph)PFDHSR ddPTM_HeLa_A486_30min_R1 1 YRDVSPFDHSR 11 1 P18031 P18031 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 1 0 YRDVS(0.817)PFDHS(0.182)R 62.357 0.0053984 0 191070 185090 162500 51964 222010 180980 188000 169130 172520 186470 TRUE FALSE FALSE 177676.9797 170422.7943 225424.3519 120974.8181 194163.4356 158652.5277 140960.4115 130622.7911 187474.1725 139776.6983 1.271148781 1.219250393 1.612746292 0.865486305 1.38909731 1.135042748 1.008468602 0.934510492 1.341240527 1 17.09276435 -5.820973979 0.908589172 1.073038405 1.32226742 0.173724712 0.201176723 1.038331494 1.862677765 0.100157295 0.150560567 1.51E-06 5.820973979 0.249229015 YRDYYR ddPTM_HeLa_A485_30min_R1 1 YRDYYR 6 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 120.9 0.0080024 126590000 28376 47616 40736 29666 48510 41254 49591 57347 38396 39132 FALSE FALSE TRUE 34688.1433 53184.277 55805.94157 31286.57846 43680.17407 43413.99565 38995.47773 43282.55833 46101.72501 29377.11257 1.180788044 1.81039838 1.899640117 1.06499842 1.486877717 1.477816976 1.327410161 1.473342835 1.569307566 1 14.84240498 -12.02433184 0.296901121 7.14E-14 1.515301105 0.250966348 0.242148419 102.5207698 2.784277522 64.86113269 0.260812257 9.46E-13 12.02433184 1.515301105 YRDYYR ddPTM_HeLa_A486_30min_R1 1 YRDYYR 6 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 89.673 0.020474 45498000 35583 35277 31001 10665 44167 34815 37014 41753 31302 42036 FALSE FALSE TRUE 33088.81545 32481.52204 43005.41744 24828.65898 38627.16302 30519.87927 27752.70571 32246.75336 34015.28256 31509.91199 1.050108152 1.030835061 1.364821884 0.787963451 1.225873402 0.968580277 0.88076113 1.023384431 1.079510554 1 14.9435181 YREPPPT(ph)PPGYLGISLADLK ddPTM_HeLa_A485_30min_R1 2 YREPPPTPPGYLGISLADLK 20 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 YREPPPT(1)PPGYLGISLADLK;YREPPPT(1)PPGYLGISLADLK ; 159.13 1.37E-10 332330000 350410 343930 270200 354990 419260 376960 469090 503460 287510 479500 TRUE FALSE FALSE 428357.4956 384149.6217 370158.224 374382.2048 377517.0023 396697.0427 368865.0894 379985.6456 345210.6198 359969.4745 1.189982834 1.067172771 1.028304482 1.040038757 1.048747266 1.102029674 1.024712137 1.05560519 0.958999705 1 18.45751505 -4.267277787 2.790434841 1.037467909 1.217207589 0.639533428 0.035314039 0.271942976 2.948417593 0.009014206 0.11119377 5.40E-05 4.267277787 0.17973968 YREPPPT(ph)PPGYLGISLADLK ddPTM_HeLa_A486_30min_R1 1 YREPPPTPPGYLGISLADLK 20 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 YREPPPT(1)PPGYLGISLADLK 150.95 1.53E-09 141700000 134750 131160 83620 51955 135120 133320 158850 151110 108100 162120 TRUE FALSE FALSE 125304.7208 120766.4039 115999.9034 120953.8657 118171.9897 116872.3339 119104.0499 116705.5517 117470.195 121524.0968 1.031110078 0.993765081 0.954542404 0.99530767 0.972416112 0.961721477 0.980085868 0.960349057 0.96664117 1 16.89088289 -4.382987437 3.134078582 0.972943414 1.033293012 0.602034349 0.01412723 0.177460824 2.81221332 0.003429374 0.021961821 4.14E-05 4.382987437 0.060349599 YREWHHFLVVNMK ddPTM_HeLa_A485_30min_R1 2 YREWHHFLVVNMK 13 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 ; ; 100.55 0.0012669 48401000 106140 89403 54960 75183 54609 54405 77777 137996 30755 102002 FALSE FALSE TRUE 129750.4768 99857.90315 75291.99108 79290.05692 49171.93622 57253.56167 61159.30857 104152.2646 36927.2464 76574.77861 1.694428364 1.304057354 0.983247911 1.035459173 0.642142715 0.747681713 0.79868737 1.360137979 0.482237717 1 16.22458167 -4.385306446 1.24379954 0.859916248 1.963374986 0.584407302 0.223877773 0.823394653 1.301172862 0.066863526 1.103896135 4.12E-05 4.385306446 1.103458739 YREWHHFLVVNMK ddPTM_HeLa_A486_30min_R1 2 YREWHHFLVVNMK 13 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 ; ; 97.121 0.0030873 19102100 61400 20512.2 21463 44575 64271 37909 33710 36252 20334.7 52099 FALSE FALSE TRUE 57096.17707 18886.73857 29774.0484 103772.8527 56209.53188 33232.17301 25275.40145 27998.21098 22097.32817 39053.07129 1.462015027 0.48361724 0.762399663 2.657226417 1.43931143 0.850949027 0.647206497 0.716927249 0.565828178 1 15.25314839 -6.364688587 4.573307221 0.71613783 1.349101333 0.238429185 0.541975391 0.386233547 13.2918536 0.214001473 0.187533302 4.32E-07 6.364688587 0.632963503 YREYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_HeLa_A485_30min_R1 3 YREYSPPYAPSHQQYPPSHATPLPK 25 1 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 YREYS(1)PPYAPSHQQYPPSHATPLPK;Y(0.003)REY(0.003)S(0.99)PPYAPS(0.003)HQQYPPSHATPLPK;YREYS(0.997)PPYAPS(0.002)HQQYPPSHATPLPK ;; 151.37 1.70E-09 2064280000 1008140 1389280 1122810 1106570 1688190 1407610 1886440 2038310 1251320 1588080 TRUE FALSE FALSE 1232397.265 1551744.211 1538184.143 1167019.117 1520107.876 1481310.283 1483386.683 1538411.277 1502448.446 1192200.882 1.033716115 1.301579485 1.290205506 0.978877918 1.275043408 1.242500576 1.244242229 1.290396022 1.260230946 1 20.18519592 YREYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_HeLa_A486_30min_R1 3 YREYSPPYAPSHQQYPPSHATPLPK 25 1 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 Y(0.023)REY(0.023)S(0.921)PPY(0.001)APS(0.033)HQQYPPSHATPLPK;YREYS(1)PPYAPSHQQYPPSHATPLPK;YREYS(1)PPYAPSHQQYPPSHATPLPK ;; 169.39 3.20E-14 1821760000 853600 787000 596920 131527 1005830 733230 957790 931230 740760 724130 TRUE FALSE FALSE 793767.048 724635.2538 828063.4101 306201.503 879669.4224 642771.5375 718140.8115 719209.2576 804969.6732 542803.1347 1.462347944 1.334987231 1.525531739 0.564111523 1.620604905 1.184170644 1.323022594 1.32499098 1.482986412 1 19.05006953 -11.13987034 2.384012699 0.344100223 1.304284749 0.102305348 0.27747671 9934767.31 2895941.047 35210742.63 0.066520282 7.25E-12 11.13987034 0.960184525 YRGDYDR ddPTM_HeLa_A485_30min_R1 2 YRGDYDR 7 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 ; ; 127.02 0.002221 687800000 348790 475310 478350 345530 539720 483480 533030 568550 406060 439420 FALSE FALSE TRUE 426377.1322 530893.3699 655311.5708 364405.429 485983.5817 508794.2652 419143.786 429112.221 487552.5174 329880.6809 1.292519256 1.609349685 1.986510907 1.10465829 1.473210193 1.542358479 1.270592097 1.300810402 1.477966264 1 18.33158477 -12.36090278 0.133825853 1.15E-12 1.670796318 0.288353093 0.223918287 107.7716142 1.378489116 31.8299804 1.759615553 4.36E-13 12.36090278 1.670796318 YRGDYDR ddPTM_HeLa_A486_30min_R1 2 YRGDYDR 7 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 ; ; 106.38 0.0043197 525710000 370780 357900 329170 103715 414260 329250 367710 342460 321390 380830 FALSE FALSE TRUE 344790.2367 329538.7006 456633.4395 241453.7615 362299.648 288630.4826 275705.0688 264489.3338 349248.344 285467.6892 1.207808273 1.154381785 1.599597631 0.84581818 1.269144151 1.011079339 0.965801312 0.92651233 1.223425127 1 18.12296794 -5.275759632 24.99608982 1.037411612 1.303974518 0.393445606 0.16234155 818.4550567 1428616.588 0.044596083 0.066486105 5.30E-06 5.275759632 0.266562906 YRIQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_HeLa_A485_30min_R1 2 YRIQEQESSGEEDSDLSPEER 21 1 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 2 0 YRIQEQES(1)S(1)GEEDSDLSPEER;YRIQEQES(1)S(1)GEEDSDLSPEER ; 177.35 1.36E-14 2599100000 730550 1514540 1192680 522090 1455590 1370410 1606800 2246600 961640 797590 TRUE FALSE FALSE 893058.3271 1691652.278 1633901.964 550610.4547 1310666.349 1442162.549 1263494.054 1695617.827 1154632.327 598765.4916 1.491499326 2.825233421 2.728784452 0.919576132 2.188947705 2.408559893 2.110165117 2.831856297 1.928354829 1 19.19163155 -9.31586462 13.99698421 1.000017634 2.185648663 0.265522747 0.576890856 0 0 0.557113862 0.135119959 4.83E-10 9.31586462 1.185631028 YRIQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_HeLa_A486_30min_R1 2 YRIQEQESSGEEDSDLSPEER 21 1 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 2 0 YRIQEQES(1)S(0.999)GEEDS(0.001)DLSPEER;YRIQEQES(0.999)S(0.969)GEEDS(0.032)DLSPEER ; 132.79 9.93E-07 2521300000 1218300 1058270 859330 388720 1204910 813550 1116140 1243650 657250 1250380 TRUE FALSE FALSE 1132903.461 974408.831 1192085.59 904959.8048 1053778.952 713182.4726 836869.9667 960498.0437 714220.9592 937276.7094 1.208718247 1.039617032 1.27186089 0.965520423 1.124298664 0.760909202 0.89287396 1.024775324 0.762017185 1 19.83811551 -5.873930722 1.655154373 0.894832758 1.147450177 0.478274914 0.116762237 0.315056883 1.780280921 0.041480997 0.050751903 1.34E-06 5.873930722 0.252617419 YRLS(ph)PTLSSTK ddPTM_HeLa_A485_30min_R1 2 YRLSPTLSSTK 11 1 Q8NEM0-2;Q8NEM0-3;Q8NEM0 Q8NEM0-2 MCPH1 Microcephalin 1 0 Y(0.001)RLS(0.997)PT(0.002)LSSTK;YRLS(0.975)PT(0.025)LSSTK ; 118.73 0.00011183 862850000 803940 870510 702310 859110 1044370 965300 1145710 1204220 803800 1254440 TRUE FALSE FALSE 982773.6794 972308.5721 962123.6946 906041.0039 940388.8558 1015841.615 900919.6989 908883.1569 965115.2871 941731.1943 1.043581954 1.032469327 1.021654269 0.96210151 0.998574606 1.07869594 0.956663329 0.965119519 1.024830963 1 19.84495579 -5.014748377 16.55907264 0.997721671 1.03528593 0.190041203 0.033751896 13.8531923 15561.86647 0.009417578 0.017276962 9.67E-06 5.014748377 0.037564259 YRLS(ph)PTLSSTK ddPTM_HeLa_A486_30min_R1 1 YRLSPTLSSTK 11 1 Q8NEM0-2;Q8NEM0-3;Q8NEM0 Q8NEM0-2 MCPH1 Microcephalin 1 0 YRLS(0.88)PT(0.12)LSSTK 134.91 1.25E-05 498300000 574330 574910 358520 215530 576360 532450 645490 670930 487860 726740 TRUE FALSE FALSE 534072.4328 529352.0378 497348.5455 501764.7323 504067.5545 466761.7326 483981.5747 518173.8853 530148.0976 544759.5737 0.980381913 0.971716815 0.912968894 0.921075565 0.925302792 0.856821532 0.888431517 0.951197391 0.97317812 1 19.05526012 -10.63742041 5.596091211 1.000668293 0.928551121 0.228932499 0.037574045 0.000348166 2.26E-05 0.04043137 0.009715876 2.30E-11 10.63742041 -0.072117172 YRLSPT(ph)LSSTK ddPTM_HeLa_A486_30min_R1 1 YRLSPTLSSTK 11 1 Q8NEM0-2;Q8NEM0-3;Q8NEM0 Q8NEM0-2 MCPH1 Microcephalin 1 0 YRLS(0.341)PT(0.656)LS(0.003)STK 99.927 0.0016651 292450000 614490 624470 391920 239220 612050 596900 715610 691600 496260 695080 TRUE FALSE FALSE 571417.4242 574984.7229 543681.92 556916.2495 535280.9819 523260.5468 536556.809 534137.7775 539276.2164 521027.4438 1.096712718 1.10355938 1.043480389 1.068880836 1.027356598 1.004285961 1.029805273 1.025162463 1.03502459 1 18.99099984 -5.011526807 0.837056598 1.019784666 1.114409618 0.775872018 0.015962874 0.46471863 0.496913383 0.006647376 0.033536037 9.74E-06 5.011526807 0.094624953 YRNEGS(ph)PSPR ddPTM_HeLa_A485_30min_R1 1 YRNEGSPSPR 10 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 YRNEGS(0.916)PS(0.084)PR 97.86 0.00098698 473400000 143200 211590 190580 135250 202430 172110 186130 172910 167180 179670 TRUE FALSE FALSE 175054.346 236333.6099 261083.4727 142638.365 182275.3584 181121.4135 146361.805 130503.5514 200731.4925 134881.5756 1.297837345 1.752156356 1.935649636 1.057508147 1.351373289 1.342818044 1.085113399 0.967541718 1.488205425 1 17.04133377 -5.271093867 24.99813737 1.192688598 1.670908643 0.504749204 0.216468786 534.4200236 1383759.993 0.060789443 0.091444719 5.36E-06 5.271093867 0.478220046 YRPAS(ph)ASVSALIGGR ddPTM_HeLa_A485_30min_R1 3 YRPASASVSALIGGR 15 1 P46108-2 P46108-2 CRK Adapter molecule crk 1 0 YRPAS(0.984)AS(0.016)VSALIGGR;YRPAS(0.995)AS(0.005)VSALIGGR;YRPAS(1)ASVSALIGGR ;; 144.4 4.19E-08 1410570000 342462 390971 353960 290687 419928 402419 480465 549587 294315 407178 TRUE FALSE FALSE 418641.4904 436691.6575 484904.5335 306566.4948 378118.4939 423489.0366 377809.7277 414799.9265 353381.3209 305676.0182 1.369559486 1.42860948 1.586334893 1.002913139 1.236991034 1.385417931 1.235980925 1.35699205 1.156064918 1 18.22164384 -13.17851288 0.063093468 2.22E-11 1.772692816 0.365413169 0.141416203 376.1545802 2.002041226 62.07511645 11.94897985 6.63E-14 13.17851288 1.772692816 YRPAS(ph)ASVSALIGGR ddPTM_HeLa_A486_30min_R1 3 YRPASASVSALIGGR 15 1 P46108-2 P46108-2 CRK Adapter molecule crk 1 0 YRPAS(0.989)AS(0.011)VSALIGGR;YRPAS(1)ASVSALIGGR;YRPAS(0.999)AS(0.001)VSALIGGR ;; 221.79 6.44E-34 1470400000 363271 364632 319461 171201 426746 341697 392513 378088 301858 357002 TRUE FALSE FALSE 337807.5788 335737.2324 443164.8547 398564.58 373219.5374 299541.8983 294302.0958 292005.616 328023.2945 267606.3755 1.262330085 1.254593549 1.656032499 1.489368776 1.394658617 1.119337675 1.099757415 1.091175857 1.225767861 1 18.02975296 -6.246830569 4.783518495 1.110671635 1.423088617 0.624641697 0.117904417 0.140361232 9.137455901 0.043627362 0.041564638 5.66E-07 6.246830569 0.312416982 YRPCS(ph)LGR ddPTM_HeLa_A485_30min_R1 3 YRPCSLGR 8 1 P40938-2;P40938 P40938-2 RFC3 Replication factor C subunit 3 1 0 YRPCS(1)LGR;YRPCS(1)LGR;YRPCS(1)LGR ;; 90.685 0.0018639 328367000 132169 189917 183001 134969 219356 159737 190051 177804 170815 180415 TRUE FALSE FALSE 161569.5381 212126.1411 250700.6852 142342.0147 197516.1464 168100.5823 149445.0513 134197.2902 205096.0037 135440.8608 1.192915765 1.566190143 1.85099743 1.050953264 1.458320224 1.2411364 1.103397087 0.99081835 1.514284556 1 17.04730352 -5.82679799 1.207336607 1.164450316 1.502383026 0.223166441 0.240819643 0.676780017 2.085083172 0.101274021 0.137775036 1.49E-06 5.82679799 0.33793271 YRPCS(ph)LGR ddPTM_HeLa_A486_30min_R1 4 YRPCSLGR 8 1 P40938-2;P40938 P40938-2 RFC3 Replication factor C subunit 3 1 0 YRPCS(1)LGR;YRPCS(1)LGR;YRPCS(1)LGR;YRPCS(1)LGR ;;; 104.82 0.00070919 538190000 288520 291697 260941 96307 312196 268183 315053 312031 256741 302396 TRUE FALSE FALSE 268296.2379 268581.8674 361984.3434 224207.5631 273037.4666 235097.3081 236223.4071 240988.3529 278995.5166 226674.0733 1.183621197 1.184881285 1.596937568 0.989118693 1.204537698 1.037160116 1.042128037 1.06314917 1.230822354 1 17.79025986 -5.30697888 24.99998542 1.085321793 1.308121187 0.415011781 0.13065143 424.7789533 233191.5844 0.036149653 0.053618863 4.93E-06 5.30697888 0.222799394 YRPGTVALR ddPTM_HeLa_A485_30min_R1 2 YRPGTVALR 9 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 ; ; 185.6 1.22E-08 124608000 38639 63846 66455 41101 75122 43497 71018 263950 70977 276900 FALSE FALSE TRUE 47234.11225 71312.23431 91039.46992 43346.24356 67642.58991 45774.43566 55844.42414 199215.8486 85221.43286 207873.926 0.227224805 0.343055215 0.437955215 0.208521792 0.325401994 0.220202873 0.268645641 0.958349383 0.409966918 1 17.66534928 -7.248079297 24.72286347 0.763118608 0.293390733 0.666496576 0.161518925 375.6423571 695128.7373 0.071276393 0.040841454 5.65E-08 7.248079297 -0.469727875 YRPGTVALR ddPTM_HeLa_A486_30min_R1 1 YRPGTVALR 9 1 K7EK07;P84243;K7EMV3;K7EP01;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;Q5TEC6;Q71DI3;P68431;Q16695 K7EK07;Q5TEC6 H3F3B;H3F3A;H3F3C;HIST2H3PS2;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 102.06 0.004116 16462000 7641.7 6156.3 5787.1 2356.9 8063.3 6889.2 7907.3 7024.9 4905.1 7890.5 FALSE FALSE TRUE 7106.056292 5668.452367 8028.020104 5486.982311 7051.925727 6039.280548 5928.809905 5425.483622 5330.278017 5914.667441 1.201429558 0.958372119 1.357307099 0.927690756 1.192277638 1.021068489 1.002391083 0.917293098 0.901196571 1 12.53008134 -6.678169846 1.625528067 0.933878631 1.121752018 0.319617987 0.118469052 0.441397471 2.384176908 0.05905715 0.038584624 2.10E-07 6.678169846 0.187873387 YRPLFDYFLK ddPTM_HeLa_A485_30min_R1 2 YRPLFDYFLK 10 1 A0A0A0MSX9;P41252;J3KR24;Q5TCD1 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 176.95 2.69E-09 91603000 158897 188555 166513 172637 244600 207549 262600 284450 159231 249550 FALSE FALSE TRUE 194243.0895 210604.867 228113.0879 182067.7222 220246.7652 218415.9447 206493.3648 214688.1915 191187.2011 187341.7776 1.036838082 1.124174595 1.217630636 0.971847948 1.175641482 1.16586886 1.102228063 1.145970718 1.020526247 1 17.51531313 -7.836826181 5.699032987 1.003538821 1.119174357 0.292189281 0.066869558 0.256665796 13.71383339 0.06196295 0.016261178 1.46E-08 7.836826181 0.115635535 YRPLFDYFLK ddPTM_HeLa_A486_30min_R1 2 YRPLFDYFLK 10 1 A0A0A0MSX9;P41252;J3KR24;Q5TCD1 A0A0A0MSX9 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 160.18 6.35E-06 98463000 246191 255780 153846 78232 247639 236901 269160 260890 213873 289130 FALSE FALSE TRUE 228934.2822 235511.0613 213419.2913 182128.0496 216577.8075 207674.5633 201813.3211 201491.0422 232411.6838 216729.9661 1.056311162 1.086656661 0.984724426 0.84034549 0.999297935 0.95821804 0.931174054 0.929687047 1.07235602 1 17.72553912 -4.858694806 5.025505606 0.955759348 1.070824664 0.359440921 0.057196261 0.193649152 7.87696451 0.014848856 0.032670458 1.38E-05 4.858694806 0.115065315 YRPS(ph)MEGYR ddPTM_HeLa_A486_30min_R1 1 YRPSMEGYR 9 1 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 YRPS(1)MEGYR 88.803 0.0018253 212190000 84014 80943 79550 20698 93308 76026 83607 73532 73342 77849 TRUE FALSE FALSE 78125.05245 74528.78189 110353.8904 48185.99002 81604.44058 66646.6851 62687.6443 56790.36879 79699.34361 58355.10369 1.33878697 1.277159617 1.891075218 0.825737373 1.398411371 1.142088367 1.074244416 0.97318598 1.36576475 1 15.83257122 -5.273021153 24.99740987 1.121926138 1.479822531 0.392469206 0.222124074 773.7086285 1669924.898 0.060583522 0.090732374 5.33E-06 5.273021153 0.357896393 YRPS(ph)MEGYRAPSRQDVYGPQPQVR ddPTM_HeLa_A485_30min_R1 2 YRPSMEGYRAPSRQDVYGPQPQVR 24 3 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 YRPS(0.615)MEGYRAPS(0.385)RQDVYGPQPQVR;YRPS(0.542)MEGYRAPS(0.458)RQDVYGPQPQVR ; 163.09 3.49E-13 2624320000 247750 533700 313899 173879 389648 589350 553920 888110 235517 225751 TRUE FALSE FALSE 302861.1328 596111.5724 430023.3025 183377.5695 350853.277 620207.4547 435570.4669 670299.63 282783.1016 169475.4303 1.787050383 3.517392292 2.537378437 1.082030411 2.070230925 3.659571499 2.570109815 3.955143401 1.668578749 1 17.37071661 YRPSMEGYRAPS(ph)R ddPTM_HeLa_A485_30min_R1 2 YRPSMEGYRAPSR 13 2 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 YRPSMEGYRAPS(1)R;YRPSMEGYRAPS(1)R ; 89.636 0.0011703 698890000 220922 379490 242393 134537 235840 365370 306860 391430 174749 206971 TRUE FALSE FALSE 270065.3367 423868.0544 332064.2575 141886.4156 212358.9415 384500.2082 241296.8542 295431.1788 209819.5214 155376.9387 1.738130117 2.727998491 2.137152786 0.913175512 1.366733978 2.474628548 1.55297727 1.901383701 1.350390368 1 17.24541287 -6.904273411 0.074788457 1.58E-13 3.354282692 0.235118832 0.498684145 40.7440296 2.172047076 42.66236495 50.98292148 1.25E-07 6.904273411 3.354282692 YRPSMEGYRAPS(ph)R ddPTM_HeLa_A486_30min_R1 2 YRPSMEGYRAPSR 13 2 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 YRPSMEGYRAPS(1)R;YRPSMEGYRAPS(1)R ; 136.1 4.54E-06 462610000 171645 142639 135124 54954 195821 121799 175633 152481 140713 215797 TRUE FALSE FALSE 159613.5719 131335.7662 187447.6315 127935.6892 171259.3042 106772.6777 131687.7657 117764.4049 152910.1161 161760.0266 0.986730623 0.811917313 1.158800697 0.790898048 1.058724506 0.660068374 0.814093373 0.728019199 0.94528988 1 17.30349561 -6.249491632 24.9964963 0.811532809 0.954601639 0.18457085 0.135669523 1166.633174 2440774.442 0.042140442 0.041815696 5.63E-07 6.249491632 0.14306883 YRPSMEGYRAPS(ph)RQDVYGPQPQVR ddPTM_HeLa_A485_30min_R1 2 YRPSMEGYRAPSRQDVYGPQPQVR 24 3 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 YRPS(0.235)MEGYRAPS(0.765)RQDVYGPQPQVR;YRPS(0.001)MEGYRAPS(0.999)RQDVYGPQPQVR ; 190.8 4.85E-20 2563870000 308212 576620 362810 200128 462050 583930 635620 989770 284488 298780 TRUE FALSE FALSE 376772.6961 644050.6931 497028.5168 211060.4859 416046.6796 614503.6719 499814.5945 747027.3556 341582.1321 224299.6446 1.679773932 2.871385258 2.215913082 0.94097557 1.85486999 2.739655129 2.228334313 3.33048836 1.522883073 1 17.77506781 -6.207539488 24.93674776 2.313933096 1.928723588 0.00800108 0.747549127 1028.023974 475614.0473 0.245485909 0.24548578 6.20E-07 6.207539488 -0.385209508 YRPSMEGYRAPS(ph)RQDVYGPQPQVR ddPTM_HeLa_A486_30min_R1 2 YRPSMEGYRAPSRQDVYGPQPQVR 24 3 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716;O60716-21;O60716-2;O60716-11;C9JZR2;O60716-19;O60716-13;O60716-23;O60716-15;O60716-16;O60716-6;O60716-24;O60716-4;O60716-17;O60716-18;O60716-10;O60716-9;O60716-22;O60716-20;O60716-14;O60716-12 O60716-5 CTNND1 Catenin delta-1 1 0 YRPSMEGYRAPS(1)RQDVYGPQPQVR;YRPS(0.018)MEGYRAPS(0.982)RQDVYGPQPQVR ; 185.72 8.88E-20 2245800000 589250 456640 575010 201296 1181550 470930 695990 666880 489150 799760 TRUE FALSE FALSE 547946.6179 420454.1833 797669.2713 468627.2609 1033348.981 412831.4447 521845.9406 515045.9819 531549.9158 599494.8904 0.914013825 0.701347401 1.330568924 0.781703511 1.723699398 0.688632132 0.870476044 0.85913323 0.886662963 1 19.19338793 YRPYDGAASAYAQNYRYPEPERPS(ph)SR ddPTM_HeLa_A485_30min_R1 1 YRPYDGAASAYAQNYRYPEPERPSSR 26 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YRPYDGAASAYAQNYRYPEPERPS(0.5)S(0.5)R 114.35 0.00027664 693990000 36507 76460 58117 29049 55050 78562 69913 117720 47801 43265 TRUE FALSE FALSE 44627.8562 85401.33189 79616.89675 30635.87331 49569.02871 82675.38484 54975.51641 88848.98542 57394.22224 32479.83173 1.374017469 2.629364973 2.451271836 0.943227587 1.526147953 2.545437597 1.692604717 2.735512491 1.767072647 1 14.98725654 -6.196266271 24.99984277 2.040644552 1.821997964 0.004096379 0.642250083 1024.227769 392883.2914 0.213688065 0.213688039 6.36E-07 6.196266271 -0.218646588 YRPYDGAASAYAQNYRYPEPERPS(ph)SR ddPTM_HeLa_A486_30min_R1 2 YRPYDGAASAYAQNYRYPEPERPSSR 26 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YRPYDGAASAYAQNYRYPEPERPS(0.855)S(0.145)R;YRPYDGAASAYAQNYRYPEPERPS(0.5)S(0.5)R ; 136.02 3.05E-06 1673930000 347260 280634 198555 82613 349631 210408 288004 301188 179972 340321 TRUE FALSE FALSE 322918.8673 258395.5398 275440.8135 192327.239 305777.0198 184450.0002 215942.353 232614.0673 195572.1179 255102.4065 1.265840145 1.012909064 1.079726441 0.753921696 1.198644199 0.723042964 0.84649281 0.911845837 0.766641603 1 17.96071698 -1 0.506784677 0.866976069 13.86265215 0.409067125 0.137569498 104.7662623 1.094893027 0.070598855 1454.013768 0.1 1 12.99567608 YRPYDGAASAYAQNYRYPEPERPSS(ph)R ddPTM_HeLa_A485_30min_R1 4 YRPYDGAASAYAQNYRYPEPERPSSR 26 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YRPYDGAASAYAQNYRYPEPERPS(0.176)S(0.824)R;YRPYDGAASAYAQNYRYPEPERPS(0.178)S(0.822)R;YRPYDGAASAYAQNYRYPEPERPS(0.133)S(0.867)R;YRPYDGAASAYAQNYRYPEPERPS(0.054)S(0.946)R ;;; 127.77 4.61E-05 6375650000 371019 790590 513090 226380 565520 706780 733540 1092860 399021 339312 TRUE FALSE FALSE 453550.8965 883042.6233 702903.3425 238746.5662 509214.8431 743785.9079 576813.1865 824834.3715 479100.8547 254727.763 1.780531856 3.466613191 2.759429652 0.937261661 1.999055137 2.919924783 2.264429993 3.238101579 1.880834853 1 17.95859668 YRPYDGAASAYAQNYRYPEPERPSS(ph)R ddPTM_HeLa_A486_30min_R1 1 YRPYDGAASAYAQNYRYPEPERPSSR 26 3 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YRPYDGAASAYAQNYRYPEPERPS(0.052)S(0.948)R 104.39 0.003525 1053300000 184910 140800 132990 44376 206950 99217 163440 119550 121090 183860 TRUE FALSE FALSE 171948.7639 129642.4952 184487.2896 103309.5706 180992.4013 86976.6153 122545.5833 92331.07476 131586.1787 137820.2593 1.247630535 0.940663556 1.338607913 0.749596403 1.313249607 0.6310873 0.889169589 0.669938333 0.954766588 1 17.07242845 -6.265357685 24.99978985 0.81212459 1.099895105 0.347063413 0.196714237 377.5519926 2408870.003 0.062704362 0.057387998 5.43E-07 6.265357685 0.287770515 YRS(ph)DIHTEAVQAALAK ddPTM_HeLa_A485_30min_R1 4 YRSDIHTEAVQAALAK 16 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 YRS(0.987)DIHT(0.013)EAVQAALAK;YRS(0.997)DIHT(0.003)EAVQAALAK;YRS(1)DIHTEAVQAALAK;YRS(0.999)DIHT(0.001)EAVQAALAK ;;; 262.17 4.47E-51 1908030000 877240 1099250 882110 865400 1468200 1307280 1547930 2635790 1176160 1407710 TRUE FALSE FALSE 1072379.012 1227797.725 1208439.197 912674.6107 1322020.853 1375727.159 1217202.11 1989358.37 1412204.524 1056793.804 1.014747633 1.161813895 1.143495725 0.863626005 1.250973319 1.301793362 1.151787705 1.882447041 1.336310374 1 20.01126248 -6.420120515 1.449699095 1.425096387 1.068405445 0.222785515 0.231672584 0.515312543 2.181843918 0.111627955 0.08882608 3.80E-07 6.420120515 -0.356690941 YRS(ph)DIHTEAVQAALAK ddPTM_HeLa_A486_30min_R1 4 YRSDIHTEAVQAALAK 16 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 YRS(0.981)DIHT(0.019)EAVQAALAK;YRS(0.982)DIHT(0.018)EAVQAALAK;YRS(0.986)DIHT(0.014)EAVQAALAK;YRS(0.971)DIHT(0.029)EAVQAALAK ;;; 249.06 2.49E-42 1612160000 2013840 2119850 1338390 855110 2158910 2349570 2928990 3073950 1782370 2768990 TRUE FALSE FALSE 1872680.215 1951865.366 1856650.451 1990739.295 1888119.377 2059703.942 2196125.722 2374078.689 1936867.267 2075616.881 0.902228264 0.940378441 0.894505373 0.959107296 0.909666612 0.992333393 1.05805929 1.143794267 0.933152589 1 20.98510874 -6.476782961 3.282600269 1.044981753 0.923082414 0.501888675 0.052594623 0.191625888 4.155578696 0.019786397 0.01629021 3.34E-07 6.476782961 -0.121899339 YRS(ph)PEPDPYLSYR ddPTM_HeLa_A485_30min_R1 6 YRSPEPDPYLSYR 13 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 Y(0.001)RS(0.999)PEPDPYLSYR;Y(0.001)RS(0.999)PEPDPYLSYR;YRS(1)PEPDPYLSYR;YRS(1)PEPDPYLSYR;YRS(1)PEPDPYLSYR;Y(0.001)RS(0.999)PEPDPYLSYR ;;;;; 233.12 7.08E-29 18056020000 3257160 4762790 4625780 3479490 5223880 4365880 5252240 5912770 4168920 4528400 TRUE FALSE FALSE 3981704.005 5319756.86 6337048.517 3669565.728 4703772.165 4594470.726 4130056.017 4462653.887 5005584.004 3399553.219 1.171243322 1.56484 1.864082751 1.079425881 1.383644221 1.351492514 1.214882001 1.31271776 1.472424075 1 21.69691372 -5.280353193 24.98545937 1.279437343 1.536533901 0.270363432 0.204496085 1102.365297 1456239.941 0.057032044 0.084742405 5.24E-06 5.280353193 0.257096558 YRS(ph)PEPDPYLSYR ddPTM_HeLa_A486_30min_R1 7 YRSPEPDPYLSYR 13 1 H3BUL5;H3BVF8;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BQG1;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 Y(0.008)RS(0.992)PEPDPYLSYR;Y(0.001)RS(0.999)PEPDPYLSYR;YRS(1)PEPDPYLSYR;Y(0.001)RS(0.999)PEPDPYLSYR;YRS(0.838)PEPDPYLS(0.162)YR;YRS(1)PEPDPYLSYR;YRS(1)PEPDPYLSYR ;;;;;; 194.32 3.54E-18 15950990000 4071160 4586290 3990630 1302948 5245710 4173830 4408980 4724140 3919760 4479510 TRUE FALSE FALSE 3785792.707 4222855.677 5535908.809 3033328.791 4587744.137 3658905.291 3305806.571 3648556.449 4259527.953 3357811.539 1.127458365 1.257621408 1.648665729 0.903364812 1.366289943 1.08966964 0.984512243 1.08658762 1.26854289 1 21.67908983 -5.279226906 24.99909077 1.10933172 1.335885858 0.287464275 0.175964199 1096.080401 1540459.714 0.0492507 0.073218544 5.26E-06 5.279226906 0.226554138 YRS(ph)PYR ddPTM_HeLa_A485_30min_R1 4 YRSPYR 6 1 Q14498-3 Q14498-3 RBM39 RNA-binding protein 39 1 0 YRS(0.999)PY(0.001)R;Y(0.001)RS(0.997)PY(0.001)R;Y(0.002)RS(0.996)PY(0.003)R;YRS(0.999)PY(0.001)R ;;; 83.313 0.0093045 6998660000 769396 1299540 1386360 639865 1515620 985714 1103820 1193340 1006173 860567 TRUE FALSE FALSE 940545.4858 1451509.899 1899232.255 674819.2047 1364719.551 1037324.461 867979.8396 900671.4939 1208102.692 646043.4845 1.455854766 2.24676811 2.939790124 1.04454146 2.11242677 1.605657337 1.343531605 1.394134475 1.87000213 1 19.30127175 -5.844419073 1.084017636 1.450588608 2.120570636 0.210124798 0.50617933 0.802048112 2.014319124 0.228952835 0.315299313 1.43E-06 5.844419073 0.669982028 YRS(ph)PYR ddPTM_HeLa_A486_30min_R1 5 YRSPYR 6 1 Q14498-3 Q14498-3 RBM39 RNA-binding protein 39 1 0 YRS(0.996)PY(0.003)R;YRS(0.997)PY(0.003)R;Y(0.005)RS(0.984)PY(0.012)R;YRS(1)PYR;Y(0.001)RS(0.983)PY(0.017)R ;;;; 72.23 0.013114 6759250000 812206 906090 1191572 233270 1331430 674137 750972 775885 818050 601514 TRUE FALSE FALSE 755274.5536 834288.1285 1652980.59 543064.3488 1164429.634 590968.8311 563070.8626 599232.923 888959.2327 450890.9792 1.675071333 1.85031009 3.666031626 1.204424958 2.582508163 1.310669005 1.248796025 1.328997364 1.971561361 1 18.78241912 -6.275463654 24.27307746 1.384866459 2.203100287 0.28732055 0.648399682 737.665156 1276739.21 0.224078344 0.198662425 5.30E-07 6.275463654 0.818233829 YRS(ph)PYSGPK ddPTM_HeLa_A485_30min_R1 3 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 Y(0.054)RS(0.946)PY(0.001)SGPK;YRS(0.982)PY(0.001)S(0.017)GPK;YRS(0.617)PYS(0.383)GPK ;; 127.52 0.0019982 10430700000 2964720 3006000 2407380 3408880 3868830 3383120 4535600 4738400 2804200 4274900 TRUE FALSE FALSE 3624211.736 3357525.551 3297970.041 3595098.483 3483635.701 3560254.932 3566532.008 3576299.97 3366977.218 3209246.104 1.129303151 1.046203826 1.027646349 1.120231471 1.085499706 1.109374232 1.111330167 1.114373861 1.049148962 1 21.613803 -4.22797495 21.77891993 1.079996302 1.129303684 0.132335581 0.039886418 5268.412902 3428390.219 0.00991208 1.103612189 5.92E-05 4.22797495 0.049307382 YRS(ph)PYSGPK ddPTM_HeLa_A486_30min_R1 9 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 Y(0.081)RS(0.916)PY(0.003)SGPK;Y(0.074)RS(0.924)PY(0.002)SGPK;Y(0.324)RS(0.67)PYS(0.007)GPK;Y(0.261)RS(0.738)PYSGPK;YRS(0.5)PYS(0.5)GPK;YRS(0.902)PYS(0.098)GPK;YRS(0.902)PYS(0.098)GPK;YRS(0.995)PYS(0.005)GPK;Y(0.062)RS(0.938)PYSGPK ;;;;;;;; 152.7 0.0007595 53013570000 40566540 38642460 23859570 14732770 39361610 38768150 46052930 44649840 29772110 46682420 TRUE FALSE FALSE 37723035.03 35580290.74 33098634.49 34298633.11 34424509.84 33985329.82 34529999.82 34484046.13 32352780.47 34992838.18 1.078021589 1.016787794 0.945868818 0.98016151 0.983758724 0.971208155 0.98677334 0.985460109 0.924554342 1 25.06055635 -4.4331638 3.124086606 0.972964693 1.078608164 0.705012324 0.02120347 0.145481375 2.421214804 0.005269483 0.029724769 3.69E-05 4.4331638 0.105643471 YRSDS(ph)QDEVEK ddPTM_HeLa_A486_30min_R1 1 YRSDSQDEVEK 11 1 H0YBZ4;Q15390-2;Q15390;H7C5V5;H0YF01 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 0 YRS(0.002)DS(0.998)QDEVEK 110.22 0.00016055 0 266350 271710 148740 124510 284040 306090 357760 316920 231200 399010 TRUE FALSE FALSE 247680.2404 250178.71 206336.1114 289865.5724 248413.0546 268327.7279 268244.664 244764.2343 251240.6022 299095.2989 0.828098072 0.836451496 0.689867451 0.969141185 0.830548175 0.897131212 0.896853495 0.818348651 0.840001843 1 18.19024571 -14 0.163512448 1.557025418 0.807809733 0.326610957 0.067551156 164.9498024 1.529811671 30.05173326 0.273579225 1.00E-14 14 -0.749215684 YRSPYS(ph)GPK ddPTM_HeLa_A485_30min_R1 4 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 YRS(0.306)PYS(0.694)GPK;YRS(0.093)PYS(0.907)GPK;YRS(0.098)PYS(0.902)GPK;YRS(0.102)PYS(0.898)GPK ;;; 146.17 0.0012735 20585120000 8009600 7613270 6303050 9188960 9372320 8306830 12126010 11950800 7300070 11442020 TRUE FALSE FALSE 9791307.887 8503575.7 8634810.487 9690929.617 8439178.913 8741762.774 9535188.903 9019847.562 8765127.089 8589734.989 1.139884746 0.989969506 1.005247601 1.128198906 0.982472559 1.017698775 1.110067879 1.050072857 1.020418802 1 23.03418219 -4.243272681 24.20439888 1.037693727 1.139884882 0.311555157 0.046990656 3393.262086 4520904.602 0.011699415 0.361838105 5.71E-05 4.243272681 0.102191154 YRSPYS(ph)GPK ddPTM_HeLa_A486_30min_R1 1 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 1 0 YRS(0.499)PYS(0.501)GPK 163.46 0.00015403 7001900000 5090800 4806100 2836900 1800100 4293500 4624000 5447000 5405200 3318400 5338900 TRUE FALSE FALSE 4733961.209 4425247.132 3935423.655 4190723.772 3754969.195 4053537.893 4084102.988 4174553.955 3606041.584 4002004.69 1.182897467 1.105757608 0.983363079 1.047156137 0.938272063 1.012876847 1.020514293 1.043115708 0.90105881 1 21.93229143 -4.558345457 2.526771404 0.995686719 1.18365362 0.674715659 0.04330766 0.178629476 2.059980576 0.011160285 0.054205828 2.76E-05 4.558345457 0.187966901 YRSPYSGPK ddPTM_HeLa_A485_30min_R1 2 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 0 0 ; ; 135.56 0.00023897 613290000 198548 218500 195093 240230 305130 232490 317420 338640 241020 315560 FALSE FALSE TRUE 242714.3176 244051.6743 267266.0192 253353.1566 274750.1858 244662.8169 249600.6239 255588.009 289390.5032 236896.6995 1.024557616 1.030202932 1.128196466 1.069466806 1.159788999 1.032782717 1.053626431 1.078900675 1.221589427 1 17.85389857 -4.71874904 12.95821945 1.093839288 1.027309279 0.157651819 0.060690819 2.150063895 647.1248466 0.014956464 0.039513494 1.91E-05 4.71874904 -0.066530009 YRSPYSGPK ddPTM_HeLa_A486_30min_R1 1 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP23;Q5QP22 G3XAC6 RBM39 RNA-binding protein 39 0 0 80.037 0.010509 286160000 179060 179090 130470 71218 196840 175560 205970 209250 141940 226590 FALSE FALSE TRUE 166508.8187 164898.2562 180991.4781 165799.1032 172150.4917 153901.1922 154434.1275 161608.3429 154243.4735 169850.3891 0.980326389 0.970844147 1.065593544 0.976147915 1.013541933 0.906098555 0.90923623 0.95147467 0.908113748 1 17.373905 -6.255299374 24.96505799 0.930342531 1.001774857 0.453559196 0.036208937 418.2773888 1700702.471 0.011729096 0.01144573 5.56E-07 6.255299374 0.071432326 YRT(ph)PSR ddPTM_HeLa_A485_30min_R1 3 YRTPSR 6 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 Y(0.001)RT(0.999)PSR;YRT(0.998)PS(0.002)R;YRT(0.999)PSR ;; 84.498 0.021727 452050000 51223 71000 67594 59313 77953 56643 65036 70277 55283 78060 TRUE FALSE FALSE 62617.37963 79302.83238 92599.83342 62553.119 70191.72561 59608.73989 51140.5273 53041.45556 66377.79101 58601.07859 1.068536299 1.353265747 1.580172851 1.067439721 1.197788971 1.017195269 0.872689181 0.905127633 1.132705961 1 15.8386396 -5.903736175 1.522543427 0.971645206 1.318511915 0.461200851 0.148646775 0.336212227 1.610627064 0.059169514 0.07143853 1.25E-06 5.903736175 0.346866709 YRT(ph)PSR ddPTM_HeLa_A486_30min_R1 1 YRTPSR 6 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 YRT(1)PSR 93.162 0.017367 114240000 12292 11170 9482.7 4562 13445 11759 12944 11528 9796.5 10678 TRUE FALSE FALSE 11430.39428 10284.84852 13154.6554 10620.56655 11758.60273 10308.29414 9705.274292 8903.326054 10645.66851 8004.159298 1.42805682 1.28493801 1.64347746 1.326880957 1.469061558 1.287867189 1.212528878 1.112337439 1.330017071 1 12.96653416 -6.561500068 2.067086675 1.165867267 1.430095548 0.533857208 0.117646078 0.26267882 2.268894403 0.050789992 0.037919687 2.74E-07 6.561500068 0.264228281 YRT(ph)PSRS(ph)R ddPTM_HeLa_A486_30min_R1 1 YRTPSRSR 8 2 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 2 0 Y(0.027)RT(0.972)PS(0.004)RS(0.997)R 59.418 0.029073 254560000 232350 288030 312460 126080 454290 297470 347080 390390 263820 281220 TRUE FALSE FALSE 216063.4649 265205.4538 433452.88 293520.6117 397308.7121 260771.1759 260236.913 301506.7192 286688.13 210800.6816 1.024965684 1.25808632 2.056221435 1.392408267 1.884760093 1.237050914 1.234516468 1.430292905 1.35999622 1 17.68552001 YS(ph)AHGRTRHFESATR ddPTM_HeLa_A486_30min_R1 1 YSAHGRTRHFESATR 15 2 H0YDR1 H0YDR1 SULF1 1 0 Y(0.021)S(0.763)AHGRT(0.179)RHFES(0.037)ATR 63.145 0.015205 66462000 192700 101000 85154 9178.2 100550 98474 115520 136600 122320 114410 TRUE FALSE FALSE 179192.7251 92996.39216 118127.9093 21367.31344 87938.08141 86325.27909 86615.67415 105499.162 132922.7961 85760.99132 2.089443258 1.084367038 1.377408394 0.249149562 1.025385552 1.006579772 1.009965869 1.230153247 1.549921404 1 16.38803396 -4.038953102 1.979657869 1.030088414 2.985235548 0.47345264 0.323960377 1.55820732 3.82126047 0.089019493 6.791131345 9.14E-05 4.038953102 1.955147134 YS(ph)DDGNRETDEK ddPTM_HeLa_A485_30min_R1 1 YSDDGNRETDEK 12 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 YS(1)DDGNRETDEK 100.43 0.00050206 472180000 460590 345840 282260 788740 412570 339610 480040 387770 327120 981250 TRUE FALSE FALSE 563046.6565 386282.9796 386679.7198 831826.869 371493.0822 357391.4545 377475.5324 292668.7995 392769.9835 736642.4336 0.764341872 0.524383286 0.524921865 1.129213891 0.504305841 0.48516273 0.512427082 0.397301033 0.533189463 1 19.49060498 -10.04376616 4.725905832 1.000009673 0.594219321 0.270236524 0.198496671 65271243.44 69359097.59 6846.980387 0.050007282 9.04E-11 10.04376616 -0.405790352 YS(ph)DDGNRETDEK ddPTM_HeLa_A486_30min_R1 2 YSDDGNRETDEK 12 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 YS(1)DDGNRETDEK;YS(1)DDGNRETDEK ; 101.42 0.00044899 956500000 1191220 1212880 598210 579310 816520 1342470 1419980 1203620 964690 1876200 TRUE FALSE FALSE 1107721.629 1116766.972 829852.9326 1348662.957 714104.4479 1176849.701 1064685.985 929582.0008 1048310.106 1406387.308 0.787636253 0.794067868 0.590060027 0.95895558 0.507758029 0.836789193 0.757036116 0.660971551 0.745392183 1 20.42356253 -8.067363846 20.83127092 1.000000001 0.735339221 0.298994523 0.120574025 5816.771457 1798750.237 0.107361107 0.027720519 8.56E-09 8.067363846 -0.26466078 YS(ph)DFEWLR ddPTM_HeLa_A485_30min_R1 3 YSDFEWLR 8 0 O60493-3;O60493-4;O60493 O60493-3 SNX3 Sorting nexin-3 1 0 Y(0.002)S(0.998)DFEWLR;YS(1)DFEWLR;YS(1)DFEWLR ;; 128.81 0.00023461 31921000 92180 77229 89713 125851 167730 72319 113367 95732 107111 166970 TRUE FALSE FALSE 112685.123 86260.25975 122901.572 132725.9215 151030.2123 76105.51101 89145.21433 72253.5769 128607.1952 125347.4519 0.89898216 0.688169233 0.980487199 1.058864137 1.204892561 0.607156427 0.711184895 0.576426372 1.026005661 1 16.93557314 -6.280607791 24.99348016 0.753120723 0.956761501 0.186942967 0.183776454 1332.15756 1736980.071 0.066731352 0.058941789 5.24E-07 6.280607791 0.203640778 YS(ph)DFEWLR ddPTM_HeLa_A486_30min_R1 2 YSDFEWLR 8 0 O60493-3;O60493-4;O60493 O60493-3 SNX3 Sorting nexin-3 1 0 YS(1)DFEWLR;YS(1)DFEWLR ; 104.22 0.0015133 38975000 86673 130208 92677 60147 140508 131302 166738 154250 89037 120357 TRUE FALSE FALSE 80597.67028 119889.8439 128564.0164 140025.2557 122884.1765 115103.2942 125018.3888 119130.6423 96754.79885 90218.82381 0.893357582 1.328878374 1.425024301 1.552062527 1.362068039 1.275823485 1.385723994 1.320463261 1.072445802 1 16.46114086 -7.816731527 3.682929565 1.005248849 1.333483871 0.33158301 0.160332201 0.253629757 6.465192873 0.154691857 0.042222456 1.52E-08 7.816731527 0.328235021 YS(ph)DGSIALDIFGPQK ddPTM_HeLa_A486_30min_R1 2 YSDGSIALDIFGPQK 15 0 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 YS(1)DGSIALDIFGPQK;Y(0.29)S(0.355)DGS(0.355)IALDIFGPQK ; 256.26 2.97E-50 57461000 79604 71263.8 48889.4 33272.1 83634.9 84446.2 90457.3 85440.5 64477.3 103247.9 TRUE FALSE FALSE 74024.17068 65616.59695 67820.68498 77459.13028 73144.63098 74028.08643 67823.92678 65987.5633 70066.24428 77393.95381 0.956459349 0.847825879 0.876304694 1.000842139 0.945094899 0.956509944 0.876346581 0.852619101 0.905319354 1 16.23993324 -5.372394518 0.004617679 1.824870611 1.59E-07 0.054333589 0.05324322 98373.03256 107.5958749 20797.82682 21726.05843 4.24E-06 5.372394518 -1.824870453 YS(ph)DRFSSR ddPTM_HeLa_A485_30min_R1 1 YSDRFSSR 8 1 Q13243-3;Q13243;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 1 0 YS(1)DRFSSR 102.53 0.00087528 513270000 227060 363340 383800 168810 468170 324770 332600 395980 323990 236220 TRUE FALSE FALSE 277568.7137 405829.4524 525783.5913 178031.6629 421557.351 341774.455 261537.2929 298865.2841 389011.8212 177334.7013 1.565225033 2.288494296 2.964922192 1.003930204 2.377184769 1.927284691 1.474822982 1.685317549 2.193658761 1 17.43611535 -10.8766796 0.20546703 1.15E-12 2.164742154 0.222918381 0.52334512 47.37071806 1.506210546 25.321151 1.354052574 1.33E-11 10.8766796 2.164742154 YS(ph)DRFSSR ddPTM_HeLa_A486_30min_R1 2 YSDRFSSR 8 1 Q13243-3;Q13243;B4DJK0;B4DUA4;G3V5K8;Q13243-2 Q13243-3 SRSF5 Serine/arginine-rich splicing factor 5 1 0 YS(1)DRFSSR;YS(1)DRFSSR ; 108.7 0.00062416 1019210000 491860 538110 459450 196369 724110 519080 631060 668560 473430 564410 TRUE FALSE FALSE 457383.154 495468.2038 637361.3445 457156.9559 633285.3717 455041.1872 473162.1133 516343.4826 514467.2936 423078.0623 1.081084544 1.17110351 1.506486394 1.080549895 1.496852303 1.075549001 1.118380165 1.220444945 1.216010329 1 18.69056435 YS(ph)GAYGASVSDEELK ddPTM_HeLa_A485_30min_R1 3 YSGAYGASVSDEELK 15 0 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 YS(1)GAYGASVSDEELK;YS(1)GAYGASVSDEELK;YS(1)GAYGASVSDEELK ;; 188.9 4.88E-18 1093530000 892650 655750 523875 1539910 948810 719920 1265080 1022870 700870 2175340 TRUE FALSE FALSE 1091216.913 732434.2582 717678.1628 1624031.384 854343.1449 757613.898 994785.3232 772009.5287 841528.1802 1633067.772 0.668200629 0.448502059 0.439466246 0.994466618 0.52315229 0.463920672 0.60915128 0.472735757 0.515305118 1 20.63915323 -10.15062972 4.567596019 1.000052915 0.569296968 0.399906092 0.157816235 217520495.9 14.45094031 130016.3533 0.038723344 7.07E-11 10.15062972 -0.430755946 YS(ph)GAYGASVSDEELK ddPTM_HeLa_A486_30min_R1 3 YSGAYGASVSDEELK 15 0 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 YS(1)GAYGASVSDEELK;YS(1)GAYGASVSDEELK;YS(1)GAYGASVSDEELK ;; 259.96 2.22E-50 2195930000 2059360 2055750 1152925 1065098 1737320 2535730 2778720 2566790 1751690 3237120 TRUE FALSE FALSE 1915009.499 1892844.883 1599368.436 2479601.971 1519409.126 2222897.414 2083454.866 1982387.95 1903527.9 2426524.082 0.789198637 0.78006433 0.659119128 1.021874042 0.626166926 0.916082981 0.858617016 0.816966114 0.784466931 1 21.21045975 -14 0.17249554 1.74508675 0.763776423 0.23148545 0.107677923 195.8387868 1.856436676 50.11215396 0.357824571 1.00E-14 14 -0.981310327 YS(ph)GAYGASVSDEELKR ddPTM_HeLa_A486_30min_R1 3 YSGAYGASVSDEELKR 16 1 A0A286YEX5;C9JRZ6;F8WAR4;Q9NX63 A0A286YEX5 CHCHD3 MICOS complex subunit MIC19 1 0 YS(1)GAYGASVSDEELKR;YS(1)GAYGASVSDEELKR;YS(1)GAYGASVSDEELKR ;; 254.44 1.02E-50 1229330000 687510 705230 350971 917860 562390 922650 1128760 977570 691310 1484760 TRUE FALSE FALSE 639319.0993 649345.0064 486876.3705 2136824.466 491849.8021 808822.8238 846332.3092 754998.6512 751233.3074 1112966.432 0.574428016 0.58343629 0.437458271 1.919936132 0.441926897 0.726727061 0.760429322 0.678366058 0.674982898 1 20.08597865 YS(ph)GSYNDYLR ddPTM_HeLa_A486_30min_R1 2 YSGSYNDYLR 10 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 YS(0.998)GS(0.001)YNDYLR;Y(0.001)S(0.977)GS(0.021)Y(0.001)NDYLR ; 71.241 0.0078482 168000000 351580 415050 311600 135669 482790 436650 546300 500600 375150 440300 TRUE FALSE FALSE 326936.0576 382159.9264 432259.8649 315844.2883 422233.9764 382780.5625 409609.9618 386624.308 407668.3041 330046.0141 0.990577203 1.157898929 1.309695759 0.956970467 1.279318514 1.159779383 1.241069258 1.171425472 1.235186267 1 18.33230765 -4.273890569 5.052758207 1.177358103 0.983157441 0.193553574 0.107601467 0.226001578 18.14853438 0.024948353 0.149644048 5.32E-05 4.273890569 -0.194200663 YS(ph)PKTPPRWAEDQNSLLK ddPTM_HeLa_A485_30min_R1 1 YSPKTPPRWAEDQNSLLK 18 2 P49792;J3KNE0;A6NKT7;Q7Z3J3 P49792 RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 1 0 YS(0.754)PKT(0.246)PPRWAEDQNSLLK 158.52 2.13E-09 257970000 188850 265610 161940 234820 425620 444010 771870 1003400 239740 423370 TRUE FALSE FALSE 230859.031 296670.779 221848.3449 247647.622 383243.7784 467257.677 606953.6689 757314.5767 287853.619 317831.6505 0.726356329 0.933421132 0.69800583 0.779178605 1.20580747 1.470142059 1.909670317 2.382753811 0.905679527 1 18.27790327 -6.072405623 2.105871557 1.657570523 0.785515363 0.418286032 0.405500114 0.278018328 2.44820241 0.148372293 0.154842962 8.46E-07 6.072405623 -0.87205516 YS(ph)PPAISPLVSEK ddPTM_HeLa_A485_30min_R1 2 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 YS(1)PPAISPLVSEK;YS(1)PPAISPLVSEK ; 207.64 9.92E-22 312030000 396140 263290 238880 553470 370100 316280 488870 389200 304740 693110 TRUE FALSE FALSE 484259.9763 294079.4752 327251.6526 583704.6646 333251.5445 332839.9317 384418.9308 293748.0898 365898.5228 520330.4327 0.930677788 0.565178311 0.628930449 1.121796128 0.640461375 0.639670315 0.738797707 0.564541436 0.703204156 1 18.98906856 YS(ph)PPAISPLVSEK ddPTM_HeLa_A486_30min_R1 2 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 YS(1)PPAISPLVSEK;Y(0.004)S(0.996)PPAISPLVSEK ; 182.02 4.16E-17 339830000 549680 639820 281050 215389 442850 678310 683940 602820 487680 772330 TRUE FALSE FALSE 511150.2706 589118.333 389880.0868 501436.4772 387303.6236 594627.0088 512810.978 465571.0455 529952.4951 578933.541 0.882917009 1.017592334 0.673445325 0.866138238 0.668994964 1.027107546 0.885785572 0.804187376 0.915394355 1 19.14303822 -6.28059936 24.98939301 0.911712323 0.826913279 0.175581002 0.110852282 1899.114298 2476911.025 0.039658866 0.035029994 5.24E-07 6.28059936 -0.084799044 YS(ph)PPRDDDKVDNQAK ddPTM_HeLa_A485_30min_R1 3 YSPPRDDDKVDNQAK 15 2 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 YS(1)PPRDDDKVDNQAK;YS(1)PPRDDDKVDNQAK;YS(1)PPRDDDKVDNQAK ;; 182.15 4.01E-18 3674840000 4408730 2324722 1585434 8239420 4303310 3487220 6364950 5364100 3011230 11769750 TRUE FALSE FALSE 5389436.779 2596578.016 2171952.012 8689518.651 3874857.347 3669805.447 5005026.436 4048546.064 3615556.24 8835767.931 0.609956805 0.293871233 0.24581361 0.98344804 0.438542227 0.415335201 0.566450644 0.458199683 0.409195473 1 23.0749241 -10.08182921 4.365129618 1.00004611 0.49012057 0.381582159 0.194314096 527965735.3 1255313538 398175.8871 0.048771491 8.28E-11 10.08182921 -0.50992554 YS(ph)PPRDDDKVDNQAK ddPTM_HeLa_A486_30min_R1 3 YSPPRDDDKVDNQAK 15 2 Q14669-3;Q14669;Q14669-2;Q14669-4 Q14669-3 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 YS(1)PPRDDDKVDNQAK;YS(1)PPRDDDKVDNQAK;Y(0.003)S(0.997)PPRDDDKVDNQAK ;; 158.65 2.00E-08 4066300000 3712200 3212330 1246197 2440270 2627260 4907760 6499840 5585400 2841420 7164810 TRUE FALSE FALSE 3451993.95 2957773.272 1728757.853 5681071.884 2297724.553 4302290.47 4873511.284 4313726.348 3087716.573 5370694.941 0.642746234 0.550724497 0.321887181 1.057790835 0.427826301 0.801067742 0.907426569 0.803197053 0.574919374 1 22.35667735 -5.248889068 24.98994159 0.77734173 0.509679845 0.324840512 0.190833758 976.9702657 1945321.266 0.050411285 0.08656386 5.64E-06 5.248889068 -0.267661885 YS(ph)PRHS(ph)R ddPTM_HeLa_A485_30min_R1 3 YSPRHSR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 Y(0.073)S(0.927)PRHS(1)R;Y(0.057)S(0.943)PRHS(1)R;Y(0.047)S(0.953)PRHS(1)R ;; 83.045 0.0019468 1.04E+11 1396720 1818810 1439570 1535900 1827230 1493310 2109460 2253600 1428230 1702620 TRUE FALSE FALSE 1707415.545 2031504.008 1972126.849 1619802.328 1645304.565 1571497.403 1658756.638 1700901.066 1714862.66 1278188.168 1.335809224 1.589362238 1.542908077 1.267264373 1.287216238 1.229472656 1.297740567 1.330712573 1.34163553 1 20.28566881 -11.96669284 0.061340097 1.39E-09 1.945399977 0.574351473 0.100644644 196.1065892 1.311292613 37.96010805 10.72091361 1.08E-12 11.96669284 1.945399976 YS(ph)PRHS(ph)R ddPTM_HeLa_A486_30min_R1 1 YSPRHSR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 0 Y(0.028)S(0.972)PRHS(1)R 79.693 0.014288 1.01E+11 1599700 1305600 1274600 621110 1372300 1676400 1626500 1437700 1383500 1804300 TRUE FALSE FALSE 1487569.291 1202139.501 1768159.255 1445975.469 1200173.338 1469582.812 1219532.497 1110367.095 1503422.894 1352491.536 1.099873272 0.88883329 1.307334802 1.069119792 0.887379555 1.086574498 0.901693256 0.82097896 1.111595048 1 20.36718813 -5.614493719 7.511847627 0.962226279 1.095661994 0.190993626 0.124924041 0.380115332 26.84483724 0.036657431 0.047382818 2.43E-06 5.614493719 0.133435715 YS(ph)PRHS(ph)RS(ph)R ddPTM_HeLa_A485_30min_R1 1 YSPRHSRSR 9 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 Y(0.322)S(0.679)PRHS(1)RS(1)R 48.527 0.0081721 0 130570 159740 324660 313550 1147600 300870 595230 1099000 420320 597370 TRUE FALSE FALSE 159614.846 178420.2034 444765.2442 330678.4425 1033340.915 316623.088 468054.2479 829468.5268 504674.3686 448456.6528 0.355920344 0.397853845 0.991768639 0.737369912 2.304215821 0.7060283 1.043700088 1.849606917 1.125358193 1 18.77460902 -4.99667115 1.559819296 1.318461017 0.321524383 0.364285097 0.461282301 0.450120475 2.053325196 0.14036784 0.447706505 1.01E-05 4.99667115 -0.996936633 YS(ph)PRHS(ph)RS(ph)R ddPTM_HeLa_A486_30min_R1 1 YSPRHSRSR 9 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 3 0 Y(0.249)S(0.752)PRHS(0.999)RS(1)R 50.088 0.0073277 0 43537 52317 127540 85752 284510 133350 192410 230740 79565 65220 TRUE FALSE FALSE 40485.28113 48171.21038 176926.9036 199634.9897 248824.1028 116898.6328 144266.9829 178205.539 86461.75826 48888.48749 0.828114822 0.985328302 3.618989106 4.083476498 5.08962571 2.39112803 2.950939788 3.645143226 1.768550485 1 15.57720715 -4.754482833 24.60923825 3.242995464 0.906719782 0.367529467 1.115701388 125.2139081 442938.5232 0.283511714 0.715498309 1.76E-05 4.754482833 -2.336275682 YS(ph)PRHSR ddPTM_HeLa_A485_30min_R1 2 YSPRHSR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 Y(0.002)S(0.967)PRHS(0.03)R;Y(0.061)S(0.929)PRHS(0.01)R ; 72.607 0.0046583 306580000 389250 571730 449950 430210 556670 505980 603460 678090 476720 556900 TRUE FALSE FALSE 475837.3196 638588.8501 616405.229 453711.283 501245.9802 532472.3304 474525.8412 511787.3643 572393.3313 418075.079 1.138162363 1.527450169 1.474388836 1.085238766 1.198937716 1.273628487 1.135025418 1.224151809 1.369116123 1 18.67340252 -5.256073556 24.99509471 1.195418266 1.394745429 0.304748359 0.134495136 537.0634072 2501742.629 0.035849496 0.059832337 5.55E-06 5.256073556 0.199327163 YS(ph)PRHSR ddPTM_HeLa_A486_30min_R1 2 YSPRHSR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 Y(0.001)S(0.873)PRHS(0.126)R;Y(0.027)S(0.972)PRHS(0.001)R ; 71.614 0.0050069 275180000 644850 495510 537380 226670 594680 663900 636430 589140 598970 716150 TRUE FALSE FALSE 599649.345 456243.983 745467.9275 527699.2153 520089.6892 581994.768 477188.4825 455005.6828 650889.2019 536821.3786 1.117037005 0.849899056 1.388670342 0.983007079 0.968831924 1.084149759 0.888914826 0.847592329 1.212487482 1 19.0340826 YS(ph)PSQNS(ph)PIHHIPSR ddPTM_HeLa_A485_30min_R1 6 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 Y(0.392)S(0.588)PS(0.025)QNS(0.996)PIHHIPSR;Y(0.008)S(0.669)PS(0.324)QNS(1)PIHHIPSR;Y(0.106)S(0.854)PS(0.041)QNS(1)PIHHIPSR;Y(0.419)S(0.561)PS(0.021)QNS(0.999)PIHHIPSR;Y(0.123)S(0.876)PS(0.001)QNS(1)PIHHIPSR;Y(0.075)S(0.854)PS(0.085)QNS(0.986)PIHHIPSR ;;;;; 159.67 1.37E-09 18064400000 3230360 2731170 3235060 4267400 3744560 2343620 2953220 2094460 3439030 5313770 TRUE FALSE FALSE 3948942.437 3050556.573 4431843.316 4500517.256 3371738.458 2466328.319 2322240.421 1580790.401 4129211.776 3989144.932 0.989922027 0.7647144 1.110975758 1.128190962 0.845228368 0.618259893 0.582139897 0.396272993 1.035111997 1 21.92764811 -6.020471626 5.041970668 0.6827808 0.990745278 0.275384602 0.201508423 0.220268388 15.71283386 0.065602378 0.069203479 9.54E-07 6.020471626 0.307964479 YS(ph)PSQNS(ph)PIHHIPSR ddPTM_HeLa_A486_30min_R1 6 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 Y(0.338)S(0.594)PS(0.119)QNS(0.949)PIHHIPSR;Y(0.232)S(0.751)PS(0.021)QNS(0.996)PIHHIPSR;Y(0.003)S(0.914)PS(0.083)QNS(1)PIHHIPSR;Y(0.11)S(0.888)PS(0.002)QNS(1)PIHHIPSR;Y(0.178)S(0.584)PS(0.238)QNS(1)PIHHIPSR;Y(0.157)S(0.478)PS(0.402)QNS(0.963)PIHHIPSR ;;;;; 170.38 1.59E-12 21698120000 3321635 4523063 2838065 667227 3324689 4101154 3657715 3336605 3846223 2967882 TRUE FALSE FALSE 3088805.539 4164639.015 3937039.774 1553338.176 2907675.504 3595195.317 2742516.02 2576932.879 4179616.706 2224705.03 1.388411272 1.871996044 1.769690688 0.698222081 1.306993721 1.616032359 1.232754897 1.158325641 1.878728484 1 21.08518263 YS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A485_30min_R1 6 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 YS(0.999)PS(0.001)QNS(1)PIHHIPSRR;YS(0.999)PSQNS(1)PIHHIPSRR;YS(0.993)PS(0.007)QNS(1)PIHHIPSRR;YS(0.999)PS(0.001)QNS(1)PIHHIPSRR;YS(0.791)PS(0.209)QNS(1)PIHHIPSRR;Y(0.001)S(0.997)PS(0.002)QNS(1)PIHHIPSRR ;;;;; 228.57 5.00E-34 37145900000 2428980 3118640 3059250 2318170 3874910 2647800 3209380 3025000 2922570 3227510 TRUE FALSE FALSE 2969298.221 3483337.819 4190993.881 2444805.757 3489110.355 2786434.714 2523669.745 2283114.007 3509102.992 2422951.155 1.225488271 1.437642609 1.729706302 1.009019828 1.440025049 1.150016874 1.04156856 0.942286435 1.448276406 1 21.20833389 -5.933857313 1.157105277 1.105502956 1.424357119 0.247025368 0.214223821 0.653034584 1.85121008 0.095503769 0.117680816 1.16E-06 5.933857313 0.318854162 YS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_A486_30min_R1 6 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 2 0 Y(0.001)S(0.988)PS(0.012)QNS(1)PIHHIPSRR;Y(0.001)S(0.997)PS(0.001)QNS(1)PIHHIPSRR;YS(0.944)PS(0.056)QNS(1)PIHHIPSRR;YS(0.997)PS(0.003)QNS(1)PIHHIPSRR;YS(0.991)PS(0.009)QNS(1)PIHHIPSRR;YS(0.834)PS(0.165)QNS(1)PIHHIPSRR ;;;;; 213.13 8.21E-26 35652300000 2569690 2798090 2164350 478157 2924860 2360160 2763180 2731140 2223520 2369980 TRUE FALSE FALSE 2389568.001 2576359.158 3002444.283 1113173.661 2557996.786 2068987.456 2071803.138 2109319.042 2416256.504 1776521.582 1.345082449 1.450226771 1.690069129 0.626602948 1.439890633 1.164628382 1.166213323 1.187330941 1.360105348 1 20.76062378 -5.172500965 22.75680235 1.157804032 1.490634489 0.353589104 0.221624146 36.64740631 9374.550791 0.057548269 0.099676543 6.72E-06 5.172500965 0.332830458 YS(ph)PSQNSPIHHIPSR ddPTM_HeLa_A485_30min_R1 2 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YS(0.995)PS(0.005)QNSPIHHIPSR;YS(0.944)PS(0.056)QNSPIHHIPSR ; 204.63 1.34E-25 671500000 250142 253070 328690 192145 349790 191598 221904 148889 316930 387250 TRUE FALSE FALSE 305785.2249 282664.3351 450286.1089 202641.3948 314963.6794 201629.775 174492.3976 112373.7393 380534.9439 290715.7018 1.051835945 0.972305016 1.548888162 0.697043172 1.08340787 0.693563415 0.600216626 0.386541692 1.308959033 1 18.14924947 -5.295513083 24.99886599 0.79470518 1.1691395 0.253212616 0.284755357 805.703659 591119.1687 0.079660179 0.118161443 5.06E-06 5.295513083 0.37443432 YS(ph)PSQNSPIHHIPSR ddPTM_HeLa_A486_30min_R1 2 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YS(0.994)PS(0.006)QNSPIHHIPSR;YS(1)PSQNSPIHHIPSR ; 204.63 1.34E-25 1319250000 160047 217987 182418 8949.9 179771 176405 160929 142408 205327 87641 TRUE FALSE FALSE 148828.5318 200712.9162 253055.1349 20835.8195 157222.4449 154641.9447 120662.8621 109984.8071 223124.9097 65695.12315 2.265442618 3.0552179 3.851962258 0.317159304 2.393213337 2.353933401 1.83670958 1.674170043 3.396369456 1 16.00349866 -5.230160631 24.99945462 1.923861491 3.057308414 0.291004652 0.856564058 911.8432516 728787.219 0.226378637 0.392050022 5.89E-06 5.230160631 1.133446923 YS(ph)PSQNSPIHHIPSRR ddPTM_HeLa_A485_30min_R1 4 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YS(0.965)PS(0.035)QNSPIHHIPSRR;YS(0.859)PS(0.141)QNSPIHHIPSRR;YS(0.854)PS(0.146)QNSPIHHIPSRR;Y(0.001)S(0.944)PS(0.055)QNSPIHHIPSRR ;;; 231.42 1.43E-34 2738370000 311759 575850 584580 207905 576757 409051 464325 507250 480860 375890 TRUE FALSE FALSE 381108.714 643190.6483 800840.4684 219262.3237 519333.048 430468.2778 365118.1706 382846.1422 577364.1913 282187.5407 1.350551172 2.279302079 2.837972457 0.77700923 1.840382629 1.52546876 1.293884803 1.356708171 2.046030061 1 18.10629477 -5.26180857 24.99999583 1.438953987 2.168277887 0.335488156 0.48221642 39.08317034 2646619.95 0.131414671 0.209356454 5.47E-06 5.26180857 0.7293239 YS(ph)PSQNSPIHHIPSRR ddPTM_HeLa_A486_30min_R1 2 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 Y(0.001)S(0.811)PS(0.189)QNSPIHHIPSRR;Y(0.006)S(0.975)PS(0.019)QNSPIHHIPSRR ; 143.72 7.11E-08 1412740000 223003 205894 168316 63244.3 254159 194860 221509 224106 182996 181251 TRUE FALSE FALSE 207371.6413 189578.2096 233492.4629 147235.9266 222280.0083 170820.1544 166085.1053 173081.956 198858.2406 135864.5699 1.526311396 1.395346924 1.718567711 1.083696263 1.636041011 1.257282561 1.222431319 1.273930033 1.463650463 1 17.05180976 -12.38252559 0.076879951 2.58E-10 1.844937999 0.350873489 0.177835044 208.1007656 1.5785276 42.6513715 7.647783862 4.14E-13 12.38252559 1.844937999 YS(ph)PVSK ddPTM_HeLa_A485_30min_R1 4 YSPVSK 6 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;H7C166;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 YS(0.983)PVS(0.017)K;YS(0.901)PVS(0.099)K;YS(0.91)PVS(0.09)K;Y(0.002)S(0.985)PVS(0.014)K ;;; 86.833 0.016999 3178210000 10233800 7080100 5120590 14000900 8479300 8189700 11374000 8466600 7123600 20645200 TRUE FALSE FALSE 12510273.5 7908056.106 7014909.327 14765733.71 7635071.119 8618500.028 8943851.983 6390153.075 8553241.178 15498731.59 0.807180474 0.510238923 0.452611834 0.952705944 0.492625547 0.556077765 0.577069932 0.41230168 0.551867173 1 23.88564681 -10.81298247 6.004363745 1.031266226 0.585049101 0.378133451 0.157492198 0.059191069 0.001843619 0.136929691 0.036654465 1.54E-11 10.81298247 -0.446217125 YS(ph)PVSK ddPTM_HeLa_A486_30min_R1 3 YSPVSK 6 0 A0A590UJD9;A0A0C4DFT3;Q12959-7;A0A590UJR5;Q12959;A0A590UJS9;Q12959-6;A0A590UJ68;Q12959-3;Q12959-5;A0A590UJ81;A0A590UK81;A0A590UK02;A0A590UKA8;A0A590UJ29;A0A590UJ64;E7EQD7;Q12959-8;A0A590UK70;A0A590UJX2;A0A590UK48;A0A590UJR4;Q12959-9;H7C166;A0A590UJ08;A0A590UJC5;Q12959-4;Q12959-2;A0A590UJL2;A0A590UJ25;A0A590UJ18 A0A590UJD9;A0A590UJ08;A0A590UJ18 DLG1 Disks large homolog 1 1 0 Y(0.001)S(0.996)PVS(0.004)K;YS(0.999)PVS(0.001)K;YS(0.948)PVS(0.052)K ;; 101.33 0.01164 2710800000 5517790 6492010 3160430 2228730 4873800 7079310 7431640 6728310 5691550 9065800 TRUE FALSE FALSE 5131021.415 5977559.484 4384233.135 5188596.074 4262482.558 6205936.709 5572165.068 5196420.691 6184898.137 6795664.672 0.755043349 0.879613662 0.645151482 0.763515612 0.627235563 0.913219973 0.819958803 0.764667026 0.910124092 1 22.69618323 -6.280319417 24.97115787 0.86303347 0.738886644 0.405745436 0.087721949 994.4592178 1315289.621 0.030683214 0.027104603 5.24E-07 6.280319417 -0.124146827 YS(ph)SSGSPANSFHFK ddPTM_HeLa_A485_30min_R1 1 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 YS(0.339)S(0.271)S(0.217)GS(0.174)PANSFHFK 118.24 7.97E-05 0 116360 200880 183510 127820 281880 224900 274990 315380 216870 233160 TRUE FALSE FALSE 142243.8806 224371.1686 251397.9855 134802.4829 253815.0375 236675.4162 216236.14 238032.5605 260393.8198 175037.503 0.812648022 1.28184626 1.436252124 0.77013486 1.450060891 1.352141182 1.235370343 1.359894631 1.487645878 1 17.41730454 YSAFQLAPFQDHGLPAVS(ph)VDSPVR ddPTM_HeLa_A485_30min_R1 1 YSAFQLAPFQDHGLPAVSVDSPVR 24 0 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 1 0 YSAFQLAPFQDHGLPAVS(0.81)VDS(0.19)PVR 104.29 0.00030437 115590000 101110 97399 87224 86887 103390 98900 105280 109360 80604 131240 TRUE FALSE FALSE 123601.5707 108788.9658 119491.7873 91633.4168 93096.12858 104078.2511 82786.06794 82539.28853 96780.48346 98524.28329 1.254529001 1.10418429 1.212815595 0.930059207 0.944905413 1.056371562 0.840260545 0.837755787 0.982300812 1 16.58819173 -5.265051876 24.88897254 0.935593879 1.181877102 0.713721713 0.072087915 157.4508068 1084789.08 0.020604219 0.031950397 5.43E-06 5.265051876 0.246283223 YSAFQLAPFQDHGLPAVSVDS(ph)PVR ddPTM_HeLa_A486_30min_R1 2 YSAFQLAPFQDHGLPAVSVDSPVR 24 0 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 1 0 YSAFQLAPFQDHGLPAVS(0.117)VDS(0.883)PVR;YSAFQLAPFQDHGLPAVS(0.021)VDS(0.979)PVR ; 121.7 2.36E-05 330410000 152899 159149 122321 55283 188339 168918 159426 155850 148238 199165 TRUE FALSE FALSE 142181.5697 146537.4536 169686.9671 128701.6178 164715.7664 148078.6146 119535.9286 120366.3572 161087.3892 149292.7877 0.952367304 0.981544092 1.136605256 0.862075254 1.103306925 0.991867169 0.800681201 0.806243617 1.079003157 1 17.18778494 -6.55129525 24.83984193 0.904041062 1.009154783 0.123081252 0.105259326 340.8372688 297934.5404 0.039188864 0.03035604 2.81E-07 6.55129525 0.105113721 YSALFLGVAYGATR ddPTM_HeLa_A485_30min_R1 2 YSALFLGVAYGATR 14 0 P56385 P56385 ATP5I "ATP synthase subunit e, mitochondrial" 0 0 ; ; 167.84 3.79E-07 29396000 25562 26860 17697.8 25482 23606 24451 32015 32021 14129.1 50412 FALSE FALSE TRUE 31248.17871 30001.04335 24244.95269 26874.01714 21255.70375 25731.21655 25174.73371 24167.79954 16964.68077 37845.21616 0.825683716 0.792730136 0.640634541 0.710103412 0.561648364 0.679906714 0.665202535 0.638595891 0.448264866 1 15.20782333 -4.708115095 4.752662417 0.652914212 0.816577506 0.14719547 0.132472627 0.310439587 14.42235252 0.031805563 0.087001041 1.96E-05 4.708115095 0.163663293 YSALFLGVAYGATR ddPTM_HeLa_A486_30min_R1 1 YSALFLGVAYGATR 14 0 P56385 P56385 ATP5I "ATP synthase subunit e, mitochondrial" 0 0 111.52 0.0022994 10440000 9879.8 11161 11094 5277.2 13961 11407 13737 12992 11954 13413 FALSE FALSE TRUE 9187.277039 10276.56171 15389.89391 12285.58829 12209.8812 9999.720318 10299.8573 10034.00521 12990.18234 10054.2975 0.913766182 1.022106389 1.530678191 1.221924088 1.214394263 0.994571756 1.024423368 0.99798173 1.292002982 1 13.29552466 -6.249323743 24.34122874 1.059334037 1.193517564 0.106246747 0.170116157 1248.625142 2508582.187 0.059514005 0.059060239 5.63E-07 6.249323743 0.134183527 YSDVEVPASVTGYSFASDGDSGTCS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 YSDVEVPASVTGYSFASDGDSGTCSPLR 28 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 YSDVEVPASVTGYSFASDGDSGT(0.001)CS(0.999)PLR;YSDVEVPASVTGYSFASDGDSGT(0.049)CS(0.951)PLR ; 199.85 1.66E-28 206091000 258110 312800 350070 297470 435420 280150 375810 348480 322570 419580 TRUE FALSE FALSE 315525.679 349379.239 479575.4606 313720.0329 392068.0559 294818.2208 295515.1234 263014.7336 387306.8402 314986.4278 1.001711982 1.109188232 1.52252738 0.995979525 1.244714125 0.935971187 0.938183672 0.835003386 1.229598503 1 18.26493014 -6.26583661 24.82600835 0.974341075 1.180558828 0.235724553 0.167396898 488.0184398 2755258.921 0.05761598 0.052520698 5.42E-07 6.26583661 0.206217752 YSDVEVPASVTGYSFASDGDSGTCS(ph)PLR ddPTM_HeLa_A486_30min_R1 2 YSDVEVPASVTGYSFASDGDSGTCSPLR 28 0 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 YSDVEVPASVTGYSFASDGDSGT(0.004)CS(0.996)PLR;YSDVEVPASVTGYSFASDGDSGT(0.079)CS(0.921)PLR ; 224.93 1.32E-38 228850000 229800 298090 230400 102450 342210 258550 285430 309250 225430 258480 TRUE FALSE FALSE 213692.2067 274468.2628 319617.0503 238508.7775 299286.8308 226652.7297 214012.395 238840.5259 244970.4539 193754.9256 1.10289948 1.416574376 1.649594452 1.230981751 1.544666955 1.169790802 1.104552023 1.232693957 1.264331491 1 17.56387346 -6.293544217 21.53781588 1.165709084 1.396183335 0.357842563 0.156657929 144.2955118 96800.62758 0.054623748 0.048184066 5.09E-07 6.293544217 0.230474251 YSDVEVPASVTGYSFASDGDSGTCS(ph)PLRHS(ph)FQK ddPTM_HeLa_A485_30min_R1 1 YSDVEVPASVTGYSFASDGDSGTCSPLRHSFQK 33 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 2 0 YSDVEVPASVTGYSFASDGDS(0.021)GT(0.131)CS(0.848)PLRHS(1)FQK 242.39 2.77E-50 184480000 179560 156530 135050 193070 226980 154530 228670 220400 144510 250460 TRUE FALSE FALSE 219502.5025 174834.8219 185010.6149 203616.9252 204381.0742 162620.9519 179812.7864 166346.5544 173511.8315 188024.9314 1.167411688 0.929849146 0.983968528 1.08292514 1.086989224 0.864890367 0.95632417 0.884704774 0.922812896 1 17.52056444 -6.258494646 24.9958709 0.920451597 1.041676334 0.446558541 0.068836669 257.2583385 2183698.581 0.023074618 0.022127273 5.51E-07 6.258494646 0.121224737 YSDVEVPASVTGYSFASDGDSGTCS(ph)PLRHSFQK ddPTM_HeLa_A485_30min_R1 1 YSDVEVPASVTGYSFASDGDSGTCSPLRHSFQK 33 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 YSDVEVPASVTGYSFASDGDS(0.037)GT(0.14)CS(0.532)PLRHS(0.291)FQK 122.96 2.47E-06 3341700000 118900 142610 124230 113750 190360 149200 183620 193490 145590 203120 TRUE FALSE FALSE 145348.8948 159286.999 170187.8466 119963.8745 171407.09 157011.8813 144388.087 146036.2741 174808.5776 152485.9221 0.9531955 1.044601342 1.11608891 0.786720982 1.124084687 1.029681161 0.946894539 0.957703321 1.146391582 1 17.21831653 -7.744977419 24.99619289 1.073195883 0.997499435 0.093532228 0.097258312 522.8776908 793955.5007 0.064114823 0.024084877 1.80E-08 7.744977419 -0.075696448 YSDVEVPASVTGYSFASDGDSGTCSPLRHS(ph)FQK ddPTM_HeLa_A486_30min_R1 3 YSDVEVPASVTGYSFASDGDSGTCSPLRHSFQK 33 1 P35611;P35611-3;E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611-5;H0Y9H2 P35611 ADD1 Alpha-adducin 1 0 YSDVEVPASVTGYSFASDGDS(0.131)GT(0.256)CS(0.111)PLRHS(0.502)FQK;YSDVEVPASVTGYSFASDGDSGTCS(0.006)PLRHS(0.994)FQK;YSDVEVPASVTGYSFASDGDSGTCS(0.002)PLRHS(0.998)FQK ;; 402.18 1.20E-218 5424900000 2243560 2461390 1661020 367685 2653500 2255040 2844270 2804360 1963980 1991090 TRUE FALSE FALSE 2086298.03 2266340.492 2304211.428 855989.2618 2320673.287 1976836.092 2132603.562 2165868.447 2134219.368 1492508.104 1.397847036 1.518477847 1.54385187 0.573524029 1.554881532 1.324506103 1.42887235 1.451160259 1.429954961 1 20.50930733 YSEEGLS(ph)PSK ddPTM_HeLa_A485_30min_R1 3 YSEEGLSPSK 10 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(1)PSK;YSEEGLS(0.963)PS(0.037)K;YSEEGLS(1)PSK ;; 181.66 1.48E-09 579950000 872330 777600 583160 1150560 1106610 816880 1300300 1220500 776910 1678620 TRUE FALSE FALSE 1066376.799 868533.5558 798895.1513 1213412.179 996432.0229 859650.5737 1022480.283 921170.4613 932828.7108 1260170.927 0.846215998 0.689218849 0.633957771 0.962894917 0.790711801 0.68216982 0.811382219 0.730988505 0.740239829 1 20.265188 -10.0690872 3.912714809 1.000052155 0.763666559 0.382054404 0.089520833 40570539.29 75650742.32 28363.88529 0.022515007 8.53E-11 10.0690872 -0.236385596 YSEEGLS(ph)PSK ddPTM_HeLa_A486_30min_R1 3 YSEEGLSPSK 10 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(0.999)PS(0.001)K;YSEEGLS(0.994)PS(0.006)K;YSEEGLS(0.998)PS(0.002)K ;; 178.71 5.80E-10 0 840310 814110 442260 385019 851780 934490 1182070 1081580 669010 1138560 TRUE FALSE FALSE 781408.6084 749596.9587 613514.9161 896343.6898 744941.8099 819202.125 886303.5833 835327.8447 727000.3255 853457.1652 0.915580348 0.87830648 0.718858475 1.050250354 0.872852019 0.959863199 1.038486311 0.978757785 0.851829893 1 19.70295922 -5.271871767 24.99303749 0.962753246 0.841654233 0.370921312 0.075707696 764.6207685 1831812.254 0.02126406 0.031929375 5.35E-06 5.271871767 -0.121099013 YSEEGLS(ph)PSKR ddPTM_HeLa_A485_30min_R1 1 YSEEGLSPSKR 11 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(0.838)PS(0.162)KR 98.943 0.00090582 306410000 311730 286100 218740 459570 400560 330100 510330 526270 302300 621780 TRUE FALSE FALSE 381073.263 319556.9063 299661.0285 484675.1454 360678.8399 347383.5256 401293.8265 397201.4573 362968.8371 466781.689 0.816384344 0.684596062 0.641972544 1.038333672 0.772692778 0.744209839 0.859703446 0.850936244 0.777598706 1 18.83238844 -13.99999999 0.126574007 1.649697887 0.712050069 0.270753322 0.101906255 207.830432 1.673046758 34.53286068 0.865047956 1.00E-14 13.99999999 -0.937647818 YSEEGLS(ph)PSKR ddPTM_HeLa_A486_30min_R1 2 YSEEGLSPSKR 11 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(0.966)PS(0.034)KR;YSEEGLS(0.967)PS(0.033)KR ; 123.76 3.98E-05 655940000 712930 637050 374750 338320 651080 771060 963470 890990 572510 1045880 TRUE FALSE FALSE 662957.2886 586567.8379 519863.2362 787626.0577 569415.4753 675934.4568 722399.6155 688131.0272 622135.6278 783984.8405 0.845625138 0.74818773 0.663103684 1.0046445 0.726309293 0.862177968 0.921445898 0.877735119 0.793555686 1 19.58046623 -14 0.07043475 1.590114759 0.617245362 0.265518268 0.092268001 410.3039101 2.075012256 39.28897103 4.823650219 1.00E-14 14 -0.972869397 YSEEGLSPS(ph)KR ddPTM_HeLa_A485_30min_R1 1 YSEEGLSPSKR 11 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(0.397)PS(0.603)KR 134.06 1.70E-05 357380000 300940 288540 243850 444790 421860 341240 530460 524200 321330 652300 TRUE FALSE FALSE 367883.0648 322282.243 334060.2624 469087.7514 379858.1372 359106.7987 417122.8875 395639.1281 385817.9836 489693.6147 0.751251504 0.658130377 0.68218219 0.957920907 0.775705718 0.733329551 0.851803812 0.807931973 0.78787628 1 18.90151986 -14 0.09508333 1.68086223 0.619421709 0.462097448 0.076658325 193.0292098 1.259789656 26.57265195 1.609302723 1.00E-14 14 -1.06144052 YSEKEDK(ac)YEEEIK ddPTM_HeLa_A486_30min_R1 1 YSEKEDKYEEEIK 13 2 P67936;A0A2R8Y5V9;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A5F9UN72;K7EPB9 P67936 TPM4 Tropomyosin alpha-4 chain 0 1 YSEK(0.016)EDK(0.984)YEEEIK 107.65 0.0088375 32768000 14928 24949 11741 16623 29756 36501 51846 44161 19120 35922 FALSE TRUE FALSE 13881.62429 22971.95038 16287.42963 38699.18408 26023.72502 31997.87773 38873.58243 34106.50433 20777.33699 26926.89739 0.515530033 0.853122811 0.604875838 1.437194324 0.966458357 1.188323975 1.443671058 1.266633279 0.771620165 1 14.71676039 -5.246922698 24.95238971 1.170282925 0.677370839 0.533960366 0.211518598 611.0918123 1050390.106 0.056689471 0.097633321 5.66E-06 5.246922698 -0.492912085 YSEWTSPAEDS(ph)SPGISLSSSR ddPTM_HeLa_A486_30min_R1 1 YSEWTSPAEDSSPGISLSSSR 21 0 H0YNU5;P54132;A0A3B3IT82 H0YNU5 BLM Bloom syndrome protein 1 0 YSEWTSPAEDS(0.5)S(0.5)PGISLSSSR 91.475 6.28E-06 0 51450 63951 53377 22820 73690 54280 61124 60190 43693 61967 TRUE FALSE FALSE 47843.62069 58883.28985 74046.00389 53126.11326 64447.11307 47583.48548 45830.1287 46486.05094 47480.34442 46450.05986 1.030001271 1.267668761 1.594099213 1.143725399 1.387449516 1.024400951 0.986653813 1.000774834 1.022180479 1 15.50339284 -6.298476206 9.974203874 1.005347731 1.292976958 0.499791664 0.138821775 0.524890169 138.923366 0.049360123 0.043696022 5.03E-07 6.298476206 0.287629228 YSGLCPHVVVLVATVR ddPTM_HeLa_A485_30min_R1 2 YSGLCPHVVVLVATVR 16 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ; ; 134.44 3.21E-06 56530000 51282 51146 55020 53261 77328 59350 82580 81616 41651 79471 FALSE FALSE TRUE 62689.50398 57127.07979 75374.18757 56170.51357 69628.9528 62457.47423 64936.10838 61599.54803 50009.97365 59660.34226 1.050773455 0.957538586 1.263388454 0.941505051 1.167089396 1.046884276 1.088430035 1.032504101 0.838244833 1 15.86448463 -7.589965256 6.56051381 0.920830929 1.073093974 0.291432933 0.095013863 0.2504722 19.05588866 0.061088367 0.022575948 2.57E-08 7.589965256 0.152263045 YSGLTAS(ph)SKK ddPTM_HeLa_A485_30min_R1 1 YSGLTASSKK 10 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 YS(0.002)GLT(0.124)AS(0.839)S(0.036)KK 57.434 0.020537 448900000 510080 329390 205790 759520 574950 498340 698160 587140 391420 1046000 TRUE FALSE FALSE 623545.5362 367909.2952 281920.2846 801010.6544 517705.9592 524432.3118 548992.4126 443142.9944 469974.4037 785251.4502 0.794071168 0.468524184 0.35901912 1.020068991 0.659286855 0.667852714 0.699129448 0.564332602 0.598501797 1 19.58279518 -10.85380879 2.509357551 1.15246902 0.645016897 0.279039244 0.169750565 28343814.44 17458764.77 25872796.31 0.044836549 1.40E-11 10.85380879 -0.507452124 YSGLTAS(ph)SKK ddPTM_HeLa_A486_30min_R1 1 YSGLTASSKK 10 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 YSGLT(0.006)AS(0.948)S(0.046)KK 79.875 0.0045347 809720000 1118200 1130900 503380 487050 1124400 1311600 1600800 1616200 883620 1705600 TRUE FALSE FALSE 1039819.954 1041283.365 698302.217 1133877.014 983367.2674 1149788.127 1200262.908 1248226.541 960212.8931 1278506.658 0.813308204 0.814452829 0.546185827 0.886876112 0.769153028 0.899321188 0.938800671 0.976316027 0.751042544 1 20.28602824 -6.069331277 1.533483396 0.91651808 0.74606477 0.33624064 0.103145061 0.457507758 2.177575112 0.042014116 0.044272266 8.52E-07 6.069331277 -0.17045331 YSHS(ph)GS(ph)SS(ph)PDTK ddPTM_HeLa_A485_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 YSHS(1)GS(0.596)S(0.405)S(0.999)PDTK 253.71 2.74E-33 421190000 835190 794000 518280 1445800 1063200 912490 1470500 1485100 741020 1965400 TRUE FALSE FALSE 1020975.134 886851.3931 710013.3394 1524780.393 957344.0749 960266.5654 1156315.662 1120876.896 889735.917 1475461.951 0.691969816 0.601066936 0.481214266 1.033425764 0.648843621 0.65082435 0.783697378 0.759678619 0.603021933 1 20.49273529 -14 0.269593798 3.037719633 0.676519626 0.29371892 0.139987508 278.8864098 2.714809412 316.7907427 0.175557188 1.00E-14 14 -2.361200007 YSHS(ph)GS(ph)SS(ph)PDTK ddPTM_HeLa_A486_30min_R1 2 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 YSHS(0.999)GS(0.69)S(0.312)S(0.999)PDTK;YSHS(1)GS(0.726)S(0.453)S(0.82)PDTK ; 244.15 4.39E-32 445860000 2193400 1710750 1060960 1219860 1762750 2863000 3118700 2713400 1846820 3862600 TRUE FALSE FALSE 2039653.987 1575183.94 1471792.125 2839895.728 1541649.458 2509792.169 2338368.274 2095618.053 2006903.845 2895379.819 0.704451269 0.544033612 0.508324371 0.980837025 0.532451545 0.866826574 0.807620561 0.723780017 0.693140096 1 21.46532118 -13.99999966 0.054867659 2.066668741 0.211879387 0.312436277 0.139980955 577.9734023 2.326710003 87.27799546 16.87758415 1.00E-14 13.99999966 -1.854789353 YSHS(ph)GS(ph)SSPDTK ddPTM_HeLa_A486_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 Y(0.001)S(0.001)HS(0.641)GS(0.641)S(0.564)S(0.151)PDTK 91.961 0.0040934 796570000 678690 318830 283310 234410 350090 762690 728200 546750 513870 924490 TRUE FALSE FALSE 631117.3358 293564.7496 393015.2193 545718.3264 306178.4477 668597.0623 545996.6579 422266.9605 558412.6653 692991.6866 0.910714151 0.423619439 0.567128332 0.787481779 0.441821242 0.9647981 0.787883417 0.609339143 0.805799948 1 19.40247852 -6.26525652 24.92114772 0.806292765 0.620584691 0.265091709 0.169533287 499.7537496 3262752.392 0.057350336 0.052493347 5.43E-07 6.26525652 -0.185708074 YSHS(ph)GSS(ph)S(ph)PDTK ddPTM_HeLa_A485_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 YSHS(1)GS(0.232)S(0.768)S(0.996)PDT(0.004)K 279.68 6.35E-41 698500000 1073600 960830 683750 1923700 1244100 1082900 1865500 1990600 894160 2494800 TRUE FALSE FALSE 1312418.616 1073190.71 936697.5782 2028786.86 1120233.036 1139598.97 1466920.685 1502402.229 1073609.71 1872892.273 0.700744317 0.573012514 0.500134253 1.083237348 0.598129989 0.608470111 0.783238153 0.802182939 0.573236232 1 20.83683649 -14 0.28840729 3.327984976 0.677087728 0.243998322 0.160370164 366.8179847 3.473487256 513.817579 0.17586645 1.00E-14 14 -2.650897248 YSHSGS(ph)SS(ph)PDTK ddPTM_HeLa_A485_30min_R1 2 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 YSHSGS(0.797)S(0.404)S(0.792)PDT(0.007)K;YSHSGS(0.733)S(0.285)S(0.942)PDT(0.04)K ; 285.58 4.68E-54 284700000 440110 423940 209774 693240 397190 437450 676120 755110 378580 918210 TRUE FALSE FALSE 538010.9511 473516.0952 287378.132 731109.9458 357644.369 460354.2056 531661.4386 569918.0885 454557.5335 689317.1454 0.780498432 0.686935032 0.416902632 1.060629277 0.518838638 0.667840933 0.771287124 0.826786469 0.659431637 1 19.39480837 -13.99996621 0.226231679 2.545084355 0.674839684 0.21861212 0.164986288 239.2659529 2.396052884 168.6048235 0.288271798 1.00E-14 13.99996621 -1.870244671 YSHSGS(ph)SSPDT(ph)K ddPTM_HeLa_A486_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 YSHS(0.001)GS(0.663)S(0.336)S(0.473)PDT(0.527)K 226.06 8.57E-23 362040000 1037300 642520 488120 367800 700560 1265100 1105200 1001200 886970 1578300 TRUE FALSE FALSE 964590.6266 591604.3752 677133.1363 856256.9876 612689.2323 1109024.825 828667.2704 773248.616 963853.2738 1183083.407 0.815319208 0.500052973 0.572346068 0.723750314 0.517874926 0.937402061 0.700430135 0.653587576 0.814695961 1 20.17412036 -6.252724452 24.98340428 0.792022809 0.621343328 0.350931385 0.129764746 826.1917719 2368475.709 0.042069046 0.041452565 5.59E-07 6.252724452 -0.170679481 YSHSGS(ph)SSPDTK ddPTM_HeLa_A485_30min_R1 5 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YSHSGS(0.527)S(0.237)S(0.237)PDTK;YSHSGS(0.718)S(0.264)S(0.018)PDTK;YSHSGS(0.535)S(0.232)S(0.232)PDTK;YS(0.002)HS(0.138)GS(0.615)S(0.152)S(0.093)PDTK;YSHS(0.001)GS(0.459)S(0.08)S(0.459)PDTK ;;;; 301.38 3.67E-83 1759025000 2792873 2901431 1398240 3260114 2312997 2509741 3770033 4438757 2466667 4539611 TRUE FALSE FALSE 3414137.964 3240728.116 1915507.162 3438205.773 2082706.897 2641147.158 2964534.651 3350144.886 2961704.441 3407969.523 1.001810005 0.950926378 0.562066987 1.008872218 0.611128381 0.774991425 0.86988297 0.983032525 0.869052502 1 21.700481 -7.025152297 4.82031949 0.942989507 0.812236888 0.142334561 0.144449388 0.403071401 24.2448302 0.067496874 0.040252196 9.44E-08 7.025152297 -0.130752619 YSHSGS(ph)SSPDTK ddPTM_HeLa_A486_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YS(0.03)HS(0.195)GS(0.772)S(0.002)S(0.001)PDTK 103.76 0.00048805 146170000 199890 171120 192720 51857 257640 213100 252750 234050 203990 208560 TRUE FALSE FALSE 185878.7432 157559.828 267346.3452 120725.7167 225324.3888 186809.8886 189509.2767 180761.9243 221672.0174 156335.2185 1.188975491 1.007833229 1.710083932 0.772223418 1.441290011 1.194931574 1.21219824 1.156245701 1.417927576 1 17.25428329 -10.38300659 5.870816055 0.999945258 1.229409812 0.078034833 0.240430503 0.000158407 1.66E-05 0.214043552 0.051900829 4.14E-11 10.38300659 0.229464555 YSHSGSS(ph)S(ph)PDTK ddPTM_HeLa_A485_30min_R1 2 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 YSHSGS(0.229)S(0.813)S(0.701)PDT(0.257)K;YSHSGS(0.229)S(0.799)S(0.951)PDT(0.021)K ; 237.65 2.27E-27 1327970000 1261100 1175590 611460 1997120 1195060 1217070 1902310 2141660 1054260 2571320 TRUE FALSE FALSE 1541627.344 1313065.024 837664.499 2106217.609 1076075.63 1280793.903 1495865.928 1616414.527 1265840.312 1930337.246 0.798631093 0.68022571 0.433947229 1.091113801 0.557454731 0.663507844 0.774924657 0.837374159 0.655761222 1 20.88042149 -14 0.251912164 2.716611297 0.696686159 0.198505058 0.166929233 300.1132515 2.974442045 265.2972456 0.232109255 1.00E-14 14 -2.019925138 YSHSGSS(ph)S(ph)PDTK ddPTM_HeLa_A486_30min_R1 2 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 YSHSGS(0.253)S(0.785)S(0.96)PDT(0.002)K;YSHSGS(0.239)S(0.78)S(0.981)PDTK ; 206.46 6.08E-17 673180000 898380 456550 391600 306160 488290 1006490 959490 796170 700290 1263440 TRUE FALSE FALSE 835408.2012 420371.3153 543238.0074 712755.9525 427044.1151 882319.497 719415.4535 614899.4713 760991.701 947066.4004 0.882100981 0.443866782 0.57360076 0.752593432 0.450912539 0.931634251 0.759625147 0.649267539 0.803525181 1 19.85310605 -6.26814673 24.90345585 0.802565558 0.615515803 0.313791502 0.151379202 700.8456476 2602134.202 0.051176926 0.046156139 5.39E-07 6.26814673 -0.187049756 YSHSGSS(ph)SPDTK ddPTM_HeLa_A485_30min_R1 2 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YSHS(0.012)GS(0.296)S(0.442)S(0.251)PDTK;YSHS(0.004)GS(0.065)S(0.465)S(0.465)PDTK ; 208.51 2.25E-17 1194190000 957940 953010 472720 1149700 827840 877890 1283860 1527270 825880 1672690 TRUE FALSE FALSE 1171030.448 1064456.229 647598.7995 1212505.2 745417.3429 923854.9629 1009552.823 1152704.638 991626.5406 1255719.167 0.932557597 0.847686535 0.515719451 0.965586281 0.593617875 0.735717816 0.803963856 0.91796372 0.789688146 1 20.26008242 -8.082276091 0.775132369 0.993386033 0.762951164 0.187943416 0.136007465 1.250912792 1.684231591 0.130607623 0.048553851 8.27E-09 8.082276091 -0.230434868 YSHSGSS(ph)SPDTK ddPTM_HeLa_A486_30min_R1 3 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YSHS(0.002)GS(0.218)S(0.39)S(0.39)PDTK;YSHS(0.001)GS(0.284)S(0.432)S(0.284)PDTK;YSHS(0.059)GS(0.306)S(0.398)S(0.236)PDTK ;; 203.29 3.96E-17 867114000 985620 411023 454217 127653 483737 1170520 886400 668740 818570 1008630 TRUE FALSE FALSE 916533.1277 378452.0406 630101.9868 297182.6352 423062.1948 1026113.143 664613.3446 516482.5005 889524.3067 756062.4829 1.212245216 0.500556567 0.833399357 0.393066237 0.559559831 1.357180348 0.879045528 0.683121451 1.176522214 1 19.52814594 -6.223924857 24.99267621 0.990611296 0.679083529 0.258962928 0.266844421 827.6451014 551388.4486 0.087268799 0.087266906 5.97E-07 6.223924857 -0.311527767 YSHSGSSS(ph)PDTK ddPTM_HeLa_A485_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YSHSGS(0.038)S(0.017)S(0.945)PDTK 295.29 9.16E-50 136830000 195270 183490 96387 224070 153350 175800 236130 286730 162800 302060 TRUE FALSE FALSE 238707.1378 204947.5593 132044.5623 236310.3767 138081.9356 185004.6162 185678.8965 216409.0179 195472.4667 226762.001 1.052676977 0.903800277 0.582304626 1.042107477 0.608928899 0.815853694 0.818827209 0.954344277 0.862015972 1 17.79081938 -7.799770116 1.113580076 0.985516187 0.825724021 0.090935478 0.149037028 1.103384413 2.906298163 0.13784208 0.045627823 1.59E-08 7.799770116 -0.159792166 YSHSGSSS(ph)PDTK ddPTM_HeLa_A486_30min_R1 3 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YSHSGS(0.009)S(0.015)S(0.976)PDTK;YSHSGS(0.032)S(0.017)S(0.951)PDTK;YSHSGS(0.003)S(0.018)S(0.979)PDTK ;; 243.3 6.75E-28 910740000 1488500 611710 681560 180844 709180 1791500 1401020 1064010 1257660 1472990 TRUE FALSE FALSE 1384163.837 563235.8718 945478.2848 421013.9713 620228.0316 1570482.945 1050469.978 821758.1502 1366674.981 1104143.716 1.253608399 0.510111015 0.856300018 0.381303598 0.561727629 1.42235374 0.951388811 0.744249266 1.237769107 1 20.07449654 -6.232093347 24.98797407 1.047682678 0.690937022 0.291334783 0.277369675 937.1160323 797949.2871 0.090724812 0.090712539 5.86E-07 6.232093347 -0.356745657 YSHSYLS(ph)DS(ph)DTEAK ddPTM_HeLa_A485_30min_R1 1 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 YSHSYLS(1)DS(0.985)DT(0.015)EAK 219.53 1.27E-23 0 161240 113860 82968 242070 144640 140450 176160 145500 111910 289640 TRUE FALSE FALSE 197107.2817 127174.9365 113661.3158 255293.6711 130239.1337 147803.7448 138521.9769 109815.8969 134369.3105 217438.0784 0.906498453 0.584878865 0.522729582 1.174098267 0.59897114 0.67975097 0.637064023 0.50504446 0.617965866 1 17.73024509 YSHSYLS(ph)DS(ph)DTEAK ddPTM_HeLa_A486_30min_R1 1 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 2 0 YSHSYLS(1)DS(0.979)DT(0.021)EAK 126.19 3.70E-05 0 260020 226890 97904 116110 174840 298140 312460 288390 187740 394430 TRUE FALSE FALSE 241793.9407 208910.4101 135815.0508 270309.9479 152909.9369 261358.5181 234279.2031 222729.8925 204013.4544 295662.1607 0.817804822 0.706584872 0.45935892 0.914252765 0.517177905 0.883976893 0.792388186 0.753325661 0.690022199 1 18.17359009 -6.294493302 24.99268264 0.806553279 0.684762913 0.186564275 0.144831987 1278.596297 966766.1912 0.049115452 0.043318443 5.08E-07 6.294493302 -0.121790366 YSHSYLS(ph)DSDTEAK ddPTM_HeLa_A486_30min_R1 1 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4;Q92614-2;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 YSHSYLS(0.99)DS(0.01)DTEAK 213.83 1.08E-27 131370000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 YSHVSQHSPSK(ac)K ddPTM_HeLa_A486_30min_R1 1 YSHVSQHSPSKK 12 1 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 0 1 YSHVSQHSPSK(1)K 78.324 0.010123 8438200 3980.2 5442.7 7316.4 805.55 7786.4 3307 3101.6 4186.2 4554.4 1425.1 FALSE TRUE FALSE 3701.208534 5011.40063 10149.50602 1875.36111 6809.757107 2899.015963 2325.546875 3233.093644 4949.179059 1068.245684 3.464754025 4.691243507 9.501097145 1.755552246 6.374710619 2.713810134 2.176977552 3.026545009 4.632997008 1 10.06102777 -6.279921824 23.52371062 2.80340646 5.18388691 0.261952316 2.050801539 567.2889511 722019.1105 0.710685162 0.628180759 5.25E-07 6.279921824 2.38048045 YSIAFPLLCTHFMSCTHELCPEER ddPTM_HeLa_A485_30min_R1 1 YSIAFPLLCTHFMSCTHELCPEER 24 0 Q9Y2A7;Q9Y2A7-2 Q9Y2A7 NCKAP1 Nck-associated protein 1 0 0 142.85 8.94E-16 5184900 4388.1 5765.5 5691.5 4468.4 8464.5 5356.8 7906.7 7547.3 4615.6 7351.1 FALSE FALSE TRUE 5364.217706 6439.725072 7797.022693 4712.497377 7621.744659 5637.273765 6217.368953 5696.312841 5541.908583 5518.606057 0.972024031 1.166911536 1.412860895 0.853928932 1.381099608 1.021503203 1.126619456 1.03220139 1.004222538 1 12.43008819 -7.153167391 1.218113912 0.997118239 1.151679108 0.110550112 0.160290172 1.072633769 2.872385122 0.126078647 0.052153446 7.03E-08 7.153167391 0.154560869 YSIAITWGGHHIPK ddPTM_HeLa_A485_30min_R1 1 YSIAITWGGHHIPK 14 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 119.69 7.88E-05 115420000 253950 304150 223320 234600 320370 215740 357820 382330 162220 368590 FALSE FALSE TRUE 310440.3014 339717.6967 305935.3611 247415.604 288472.8379 227035.8128 281368.8339 288562.968 194776.066 276707.2964 1.121908621 1.227714994 1.105628095 0.894141959 1.042519809 0.820490879 1.016846457 1.042845533 0.703906505 1 18.07800116 -5.116123368 4.018328772 0.937207246 1.174064496 0.489347275 0.10425415 0.187974254 5.198528591 0.02762759 0.051181138 7.65E-06 5.116123368 0.23685725 YSIAITWGGHHIPK ddPTM_HeLa_A486_30min_R1 2 YSIAITWGGHHIPK 14 0 O75369-8;O75369;O75369-9;O75369-2;O75369-3;O75369-6;O75369-7;E7EN95;O75369-4;O75369-5 O75369-8 FLNB Filamin-B 0 0 ; ; 163.99 1.19E-07 146515000 453100 329770 243580 140408 356090 333020 487160 400790 294570 430180 FALSE FALSE TRUE 421340.0298 303637.8242 337900.6993 326876.9198 311425.8718 291935.3783 365267.4153 309538.8662 320103.5648 322460.128 1.306642258 0.941629051 1.047883661 1.013697172 0.965781021 0.90533791 1.132752187 0.959929118 0.992691924 1 18.29876126 -4.255147516 24.96302836 0.997015223 1.306642399 0.712515384 0.059280122 374.1571113 1484430.672 0.014386492 0.131330672 5.56E-05 4.255147516 0.309627175 YSIKDLLNHAFFQEETGVR ddPTM_HeLa_A485_30min_R1 1 YSIKDLLNHAFFQEETGVR 19 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 0 0 127.5 6.00E-07 9313500 8295.7 10174 8528.6 8484.8 12771 11444 14464 15522 8246.8 10264 FALSE FALSE TRUE 10141.04985 11363.7608 11683.68404 8948.303139 11499.4744 12043.19014 11373.64824 11715.20516 9901.857116 7705.373695 1.316100977 1.474783865 1.516303363 1.161306835 1.492396716 1.562959906 1.476067053 1.520394159 1.28505865 1 12.91164921 -8.057932356 4.408968202 1.00018345 1.440587341 0.590824217 0.112248625 0.193129196 10.58003433 0.110775885 0.028987487 8.75E-09 8.057932356 0.440403891 YSIKDLLNHAFFQEETGVR ddPTM_HeLa_A486_30min_R1 1 YSIKDLLNHAFFQEETGVR 19 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 0 0 125.88 6.94E-07 7800900 16583 13978 10067 7053.4 16271 13804 19481 16827 12245 18551 FALSE FALSE TRUE 15420.61733 12870.33237 13965.212 16420.67166 14230.13946 12101.00283 14606.64775 12995.85943 13306.40646 13905.70885 1.108941478 0.925543064 1.004279045 1.180858296 1.023330749 0.870218337 1.050406556 0.93457008 0.95690242 1 13.76338967 -6.014980466 24.66175159 0.961934322 1.049554794 0.253550632 0.075271818 893.9566139 1471685.667 0.024785325 0.025636579 9.66E-07 6.014980466 0.087620472 YSISLS(ph)PPEQQKK ddPTM_HeLa_A485_30min_R1 1 YSISLSPPEQQKK 13 1 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3K3 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 YSIS(0.006)LS(0.994)PPEQQKK 125.67 1.75E-05 789660000 424630 279170 211740 706370 420800 388710 620160 416530 323610 983810 TRUE FALSE FALSE 519087.4785 311816.503 290071.4372 744957.2045 378903.6745 409062.2545 487657.7498 314375.3644 388555.5587 738564.2727 0.702833183 0.422192779 0.392750432 1.008655891 0.513027354 0.553861417 0.660278012 0.425657422 0.526095796 1 19.49436395 -10.17634964 4.734124278 1.000053437 0.576249417 0.3499216 0.172382286 234788761.1 15.59817717 136766.6374 0.041691828 6.66E-11 10.17634964 -0.423804021 YSISLS(ph)PPEQQKK ddPTM_HeLa_A486_30min_R1 2 YSISLSPPEQQKK 13 1 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3K3 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 YSISLS(1)PPEQQKK;YS(0.001)IS(0.067)LS(0.932)PPEQQKK ; 120.63 5.07E-05 1106650000 1208110 1279040 550790 606110 1047490 1578600 1873340 1686490 1104490 1945740 TRUE FALSE FALSE 1123427.728 1177684.212 764070.6387 1411054.711 916104.0367 1383848.382 1404610.518 1302513.043 1200228.082 1458514.039 0.770254997 0.807454834 0.523869238 0.967460493 0.628107795 0.948807036 0.963042165 0.893041142 0.822911573 1 20.47606784 -6.280603745 24.7415059 0.92121808 0.743901476 0.389045199 0.116494486 790.2582374 1020232.841 0.039353658 0.034760439 5.24E-07 6.280603745 -0.177316604 YSLLPFWYTLLYQAHR ddPTM_HeLa_A485_30min_R1 2 YSLLPFWYTLLYQAHR 16 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 305.23 9.09E-83 1031730000 497782 595210 640400 512987 743850 538022 927290 708790 284824 912420 FALSE FALSE TRUE 608511.8886 664814.6319 877310.6093 541010.1809 669789.6822 566192 729166.9162 534958.1412 341985.5642 684970.4858 0.8883768 0.970574128 1.2808006 0.789829915 0.977837288 0.826593279 1.064523116 0.78099444 0.499270511 1 19.3856823 -7.415981635 5.662266831 0.715859876 0.969855964 0.237698759 0.171292719 0.280258293 12.30667159 0.094058137 0.043650792 3.84E-08 7.415981635 0.253996088 YSLLPFWYTLLYQAHR ddPTM_HeLa_A486_30min_R1 2 YSLLPFWYTLLYQAHR 16 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 297.72 4.46E-68 1042200000 208122 444780 438630 144250 582770 387400 581870 545750 457120 464820 FALSE FALSE TRUE 193533.7225 409534.0129 608479.2829 335821.29 509673.5525 339606.5268 436279.9716 421494.6386 496743.5297 348426.0465 0.555451363 1.175382888 1.746365661 0.963823725 1.462788324 0.974687542 1.252145114 1.209710476 1.425678518 1 18.41049295 -4.277357689 4.817748845 1.260831814 0.524511377 0.441595292 0.233744291 0.140227829 9.190153076 0.055215734 0.334397212 5.28E-05 4.277357689 -0.736320436 YSLS(ph)PSK ddPTM_HeLa_A485_30min_R1 7 YSLSPSK 7 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 YSLS(0.999)PS(0.001)K;YSLS(0.994)PS(0.006)K;YSLS(1)PSK;YSLS(1)PSK;YSLS(1)PSK;YSLS(1)PSK;YSLS(0.91)PS(0.09)K ;;;;;; 204.79 0.00012953 14883500000 7350910 6227370 4964510 10531060 8388410 6355680 10053720 8496760 5965760 12357980 TRUE FALSE FALSE 8986094.569 6955606.751 6801088.839 11106345.14 7553230.447 6688453.577 7905660.591 6412916.288 7163033.311 9277363.018 0.968604392 0.749739634 0.733084264 1.197144611 0.814157044 0.720943394 0.852145224 0.691243436 0.772097987 1 23.14528336 -5.978720544 24.99997275 0.788209812 0.902490209 0.102871382 0.143649948 526.0310952 617999.6925 0.044779766 0.050771522 1.05E-06 5.978720544 0.114280397 YSLS(ph)PSK ddPTM_HeLa_A486_30min_R1 7 YSLSPSK 7 0 P49792;J3KNE0;A6NKT7;Q7Z3J3;J3KQ37;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;Q99666;O14715;F8W705;Q99666-2 P49792;F8VYC4;Q99666 RANBP2;RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 YSLS(0.997)PS(0.003)K;YSLS(0.999)PS(0.001)K;YSLS(0.999)PS(0.001)K;YSLS(0.999)PS(0.001)K;YSLS(0.992)PS(0.008)K;YSLS(0.849)PS(0.15)K;YSLS(1)PSK ;;;;;; 209.21 7.18E-08 13232600000 8898180 8736920 4520660 3743940 7623370 9120740 11360450 10246530 6968720 12065920 TRUE FALSE FALSE 8274463.532 8044574.64 6271180.619 8716081.528 6667175.849 7995515.832 8517945.251 7913618.799 7572774.261 9044535.096 0.914857806 0.88944037 0.693366829 0.963684859 0.737149647 0.884016232 0.941778119 0.874961368 0.837276231 1 23.10861492 -6.508771896 24.83180171 0.904485929 0.838157824 0.14282378 0.084462652 1332.757311 2346014.306 0.029473426 0.024976135 3.10E-07 6.508771896 -0.066328105 YSLSTSNSSIAALLCALYPHFPAHSTDNR ddPTM_HeLa_A485_30min_R1 1 YSLSTSNSSIAALLCALYPHFPAHSTDNR 29 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 0 0 142.22 1.19E-18 7976800 1891.3 1843.5 2379 2673.1 3556.7 2000.4 3018.2 3090.3 2177.8 4405.8 FALSE FALSE TRUE 2312.01316 2059.081289 3259.091098 2819.124684 3202.58246 2105.137851 2373.336914 2332.39908 2614.864484 3307.515143 0.699018163 0.622546292 0.985359388 0.852339162 0.968274466 0.636471115 0.717558896 0.705181678 0.79058277 1 11.69153205 -6.27692701 24.94500717 0.748257767 0.824603197 0.028235383 0.135761431 2515.473895 4051514.116 0.048804868 0.043191229 5.29E-07 6.27692701 0.07634543 YSPDEMNNS(ph)PNFEEK ddPTM_HeLa_A486_30min_R1 1 YSPDEMNNSPNFEEK 15 0 H0Y613;Q14687-2;Q14687-3;Q14687;H7C3B5 H0Y613 GSE1 Genetic suppressor element 1 1 0 YSPDEMNNS(1)PNFEEK 133.16 1.40E-05 86292000 74381 80206 49925 34689 78861 93330 107870 107120 67133 108320 TRUE FALSE FALSE 69167.276 73850.18445 69257.29704 80757.74508 68969.51803 81815.89351 80879.78507 82731.11441 72952.14249 81195.96696 0.851856054 0.909530205 0.852964742 0.994602911 0.84942049 1.007634943 0.996105941 1.018906696 0.898470025 1 16.30912045 -6.271573231 24.81405798 0.986147844 0.896234503 0.455997103 0.050398093 598.3712276 1465185.743 0.017030658 0.015189042 5.35E-07 6.271573231 -0.089913341 YSPKT(ph)PPR ddPTM_HeLa_A485_30min_R1 3 YSPKTPPR 8 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 0 YS(0.014)PKT(0.986)PPR;YS(0.081)PKT(0.919)PPR;YS(0.007)PKT(0.993)PPR ;; 99.283 0.0027995 1583910000 2909050 2748540 2244850 3661000 3468000 2756110 3978600 3196440 2578330 4728300 TRUE FALSE FALSE 3556158.136 3069957.844 3075313.431 3860991.16 3122713.743 2900415.658 3128539.608 2412508.078 3095777.181 3549621.828 1.00184141 0.86486899 0.866377766 1.087719015 0.87973139 0.817105539 0.881372653 0.679652142 0.872142817 1 21.7592339 -5.993214596 24.98102452 0.833815607 0.947569921 0.202971041 0.095609766 248.4829596 914802.0412 0.029194978 0.033028992 1.02E-06 5.993214596 0.113754314 YSPKT(ph)PPR ddPTM_HeLa_A486_30min_R1 3 YSPKTPPR 8 1 P49792;J3KNE0;A6NKT7;Q7Z3J3;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1 P49792;F8VYC4 RANBP2;RGPD3;RGPD4;RGPD1;RGPD2 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2 1 0 YS(0.011)PKT(0.989)PPR;YS(0.001)PKT(0.999)PPR;YS(0.01)PKT(0.99)PPR ;; 88.056 0.0050875 1744080000 3368500 3036290 1733850 1290630 2569690 3254010 3813100 3652400 2441130 4396400 TRUE FALSE FALSE 3132385.545 2795683.322 2405243.154 3004651.865 2247375.519 2852563.331 2859022.049 2820828.251 2652729.114 3295512.824 0.950500184 0.848330282 0.729853981 0.911740304 0.681950166 0.865590117 0.867549969 0.855960332 0.804951841 1 21.65207155 -9.867503476 5.634509841 1.00000007 0.832654609 0.298715621 0.075684005 6.41E-08 1.30E-08 0.070976675 0.017214365 1.36E-10 9.867503476 -0.167345461 YSPKT(ph)PPRWAEDQNSLLK ddPTM_HeLa_A485_30min_R1 1 YSPKTPPRWAEDQNSLLK 18 2 P49792;J3KNE0;A6NKT7;Q7Z3J3 P49792 RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 1 0 YS(0.138)PKT(0.862)PPRWAEDQNSLLK 118.36 4.69E-05 222890000 158250 221650 113680 160260 323730 347280 525290 779220 160300 262270 TRUE FALSE FALSE 193452.1665 247570.0394 155734.9626 169014.598 291498.3045 365463.0438 413057.5003 588115.0732 192470.7396 196890.9157 0.982534749 1.257396963 0.790970787 0.858417451 1.480506622 1.856170166 2.097900245 2.98700969 0.977550127 1 17.58703702 -6.025009732 2.752657114 1.928318902 0.981325445 0.306000858 0.553172288 0.289755579 4.409071148 0.187537415 0.200802486 9.44E-07 6.025009732 -0.946993457 YSPKT(ph)PPRWAEDQNSLLK ddPTM_HeLa_A486_30min_R1 1 YSPKTPPRWAEDQNSLLK 18 2 P49792;J3KNE0;A6NKT7;Q7Z3J3 P49792 RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 1 0 YS(0.249)PKT(0.751)PPRWAEDQNSLLK 184.2 7.94E-18 258790000 442410 328180 231020 292200 711980 522760 932080 933090 296870 731850 TRUE FALSE FALSE 411399.3436 302173.8216 320477.1309 680256.367 622676.8295 458267.1862 698863.7255 720645.7762 322602.9306 548589.9965 0.749921337 0.550819052 0.58418333 1.240008698 1.135049552 0.835354617 1.273927213 1.313632733 0.588058355 1 19.06536879 -5.250851669 24.76277997 1.0715024 0.620558974 0.458437002 0.212026777 535.3666908 1252125.03 0.056848851 0.097143529 5.61E-06 5.250851669 -0.450943426 YSPPAIS(ph)PLVSEK ddPTM_HeLa_A485_30min_R1 3 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 YSPPAIS(0.999)PLVS(0.001)EK;YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK ;; 266.63 9.41E-42 455104000 437699 496122 411652 550947 696150 534080 687690 808280 442915 665720 TRUE FALSE FALSE 535063.6325 554139.1522 563939.2051 581043.8395 626838.8617 562043.603 540759.4136 610048.0627 531803.9778 499768.2557 1.070623487 1.108792217 1.128401411 1.162626543 1.254259058 1.124608449 1.082020331 1.220661888 1.064101155 1 18.93089974 -7.990390297 9.879217447 1.000002262 1.143844816 0.428638017 0.054282874 0.148770218 130.6492865 0.054108348 0.013978976 1.02E-08 7.990390297 0.143842554 YSPPAIS(ph)PLVSEK ddPTM_HeLa_A486_30min_R1 3 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK ;; 276.15 1.42E-48 414761000 489374 497049 318882 206976 531964 497708 623353 600127 407157 610645 TRUE FALSE FALSE 455071.4097 457661.027 442361.6504 481850.588 465240.1148 436305.8473 467383.4862 463491.1828 442449.6966 457735.5174 0.99417981 0.999837263 0.966413209 1.052683416 1.016395052 0.953183292 1.021077606 1.012574216 0.966605561 1 18.80415471 YSPRHS(ph)R ddPTM_HeLa_A485_30min_R1 4 YSPRHSR 7 1 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 YSPRHS(0.999)R;YSPRHS(1)R;YSPRHS(1)R;YSPRHS(1)R ;;; 78.939 0.0066066 537488000 176075 378835 215469 90949 184660 264647 248671 427055 257711 192237 TRUE FALSE FALSE 215242.2763 423136.4578 295179.9495 95917.31357 166274.602 278503.5077 195540.4094 322319.0917 309431.2338 144315.8538 1.491466604 2.932016454 2.045374377 0.664634627 1.152157561 1.929819216 1.354947529 2.23342816 2.144125027 1 17.13887027 -9.901484974 6.293025301 0.999999906 1.769302547 0.127811437 0.604965404 8.56E-07 1.50E-07 0.628531591 0.152441284 1.25E-10 9.901484974 0.769302641 YSPS(ph)QNSPIHHIPSRR ddPTM_HeLa_A486_30min_R1 1 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YS(0.455)PS(0.545)QNSPIHHIPSRR 176.1 8.70E-13 1371600000 123590 119630 114960 14152 171570 93689 126520 115460 101650 63592 TRUE FALSE FALSE 114926.9792 110150.0831 159475.5907 32946.5712 150050.0908 82130.60374 94863.35781 89172.27847 110461.1038 47668.14929 2.410980517 2.310769031 3.345537704 0.691165311 3.147806093 1.722966068 1.990078474 1.870688915 2.317293738 1 15.54073799 -10.18351413 0.169892873 5.09E-12 2.645147923 0.227514619 0.694035886 39.56854027 1.336454705 22.36713137 3.137210527 6.55E-11 10.18351413 2.645147923 YSPSQNS(ph)PIHHIPSR ddPTM_HeLa_A485_30min_R1 2 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YSPSQNS(1)PIHHIPSR;YSPSQNS(1)PIHHIPSR ; 193.47 1.54E-18 1989860000 462160 515290 607100 550920 690400 490710 634940 550000 529460 775000 TRUE FALSE FALSE 564965.8976 575548.6831 831691.5535 581015.3646 621661.3519 516402.8168 499279.882 415111.6376 635717.7655 581806.7628 0.971054195 0.989243714 1.429497914 0.998639758 1.068501419 0.887584762 0.85815414 0.71348713 1.092661354 1 19.15018054 -6.121733101 2.268214492 0.887133687 1.112610187 0.250856214 0.153260504 0.398543979 4.031976326 0.05740377 0.058011104 7.56E-07 6.121733101 0.2254765 YSPSQNS(ph)PIHHIPSR ddPTM_HeLa_A486_30min_R1 4 YSPSQNSPIHHIPSR 15 0 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YSPSQNS(1)PIHHIPSR;YS(0.009)PS(0.049)QNS(0.943)PIHHIPSR;YSPS(0.001)QNS(0.998)PIHHIPSR;YSPS(0.004)QNS(0.996)PIHHIPSR ;;; 202.21 1.77E-25 4233910000 1068640 1208880 972380 228218 1252200 1213780 1206650 1138260 1075440 992210 TRUE FALSE FALSE 993733.8545 1113083.946 1348911.577 531303.0375 1095137.4 1064036.164 904733.4074 879103.046 1168660.005 743754.1578 1.336105276 1.496575091 1.813652486 0.714353032 1.472445415 1.430628862 1.216441479 1.181980681 1.571298786 1 19.5044663 -13.74009736 0.139192012 7.36E-16 1.472338319 0.120159858 0.277087546 293.041003 2.677119785 84.4289429 1.759282399 1.82E-14 13.74009736 1.472338319 YSPSQNS(ph)PIHHIPSRR ddPTM_HeLa_A485_30min_R1 4 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YSPSQNS(1)PIHHIPSRR;YSPSQNS(1)PIHHIPSRR;YSPSQNS(1)PIHHIPSRR;YSPSQNS(1)PIHHIPSRR ;;; 225.69 4.66E-34 8535400000 2504740 4920100 4648670 2097540 5137400 4304710 5008900 6322800 3870790 3008900 TRUE FALSE FALSE 3061910.772 5495462.896 6368406.48 2212123.299 4625902.417 4530097.959 3938707.596 4772123.386 4647622.048 2258836.605 1.355525568 2.432873137 2.819330299 0.97931975 2.047913695 2.005500508 1.743688582 2.112646562 2.057529101 1 21.10714848 -10.24787628 4.647471072 0.999691771 1.964831004 0.254233677 0.487813604 331284486.8 583.5170994 1092979.21 0.116832287 5.65E-11 10.24787628 0.965139233 YSPSQNS(ph)PIHHIPSRR ddPTM_HeLa_A486_30min_R1 3 YSPSQNSPIHHIPSRR 16 1 Q9NYF8-2;Q9NYF8;E9PK91;Q9NYF8-3;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;H0YF00;Q9NYF8-4;E9PJA7 Q9NYF8-2;Q9NYF8-4 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YSPSQNS(1)PIHHIPSRR;YSPSQNS(1)PIHHIPSRR;YSPSQNS(1)PIHHIPSRR ;; 246.6 7.36E-42 4902900000 2392090 2261320 2067920 479549 3262810 1851750 2522900 2619890 1869000 2230790 TRUE FALSE FALSE 2224416.844 2082124.768 2868674.005 1116414.307 2853557.945 1623299.912 1891643.735 2023398.239 2031006.425 1672185.664 1.330245135 1.245151667 1.715523621 0.66763777 1.706483919 0.970765356 1.131240254 1.210032045 1.21458189 1 20.67330361 -1.000011851 0.087491998 0.854607692 2.28464295 0.097801568 0.287884784 401.0522774 2.53755517 5.621584167 68.91384945 0.099997271 1.000011851 1.430035259 YSPT(ph)SPK ddPTM_HeLa_A485_30min_R1 1 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YS(0.001)PT(0.642)S(0.357)PK 98.582 0.02359 2925200000 4134400 3741400 2706600 6647800 4956000 4417100 7415400 6863700 3349100 8865200 TRUE FALSE FALSE 5054083.016 4178924.184 3707883.971 7010952.481 4462563.238 4648372.526 5831039.212 5180366.813 4021233.65 6655268.792 0.759410803 0.627912157 0.557135119 1.053443925 0.67053088 0.698450006 0.876153825 0.778385814 0.604218068 1 22.6660655 -11.28848866 2.201213933 2.125021279 0.7393804 0.248071218 0.137691123 8815119.294 1321209.044 49291374.4 0.034393161 5.15E-12 11.28848866 -1.385640879 YSPT(ph)SPK ddPTM_HeLa_A486_30min_R1 2 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPT(0.5)S(0.5)PK;YS(0.001)PT(0.638)S(0.361)PK ; 99.136 0.022982 3058860000 6911700 6435400 3137700 4209900 5812800 7380500 9716200 8776200 5172100 11759000 TRUE FALSE FALSE 6427225.522 5925435.467 4352701.471 9800859.957 5083704.422 6469968.949 7285103.993 6778050.843 5620421.792 8814469.862 0.729167565 0.672239574 0.493813189 1.111905777 0.576745341 0.734016799 0.826493721 0.768968633 0.637635828 1 23.07144237 -11.56102169 2.050556979 4.810418609 0.730504183 0.211740194 0.157435239 5525316.661 265035.4433 98206557.02 0.038458341 2.75E-12 11.56102169 -4.079914426 YSPTS(ph)PK ddPTM_HeLa_A485_30min_R1 4 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPT(0.177)S(0.823)PK;YS(0.001)PT(0.024)S(0.976)PK;YSPT(0.23)S(0.769)PK;YS(0.002)PT(0.227)S(0.772)PK ;;; 90.906 0.0066157 5009860000 8206250 8136500 5833120 13081710 10522580 9111100 14990340 13631690 7321560 17411170 TRUE FALSE FALSE 10031702 9087992.897 7991033.824 13796330.69 9474914.988 9588143.108 11787531.4 10288496.65 8790929.935 13070885.75 0.767484484 0.695285161 0.611361309 1.055500825 0.724886987 0.733549607 0.901815809 0.787130792 0.672558089 1 23.63985357 -11.47066695 2.205747978 3.454448779 0.77524264 0.246110324 0.119513746 5809472.618 536003.8779 71206616.05 0.030903392 3.38E-12 11.47066695 -2.679206139 YSPTS(ph)PK ddPTM_HeLa_A486_30min_R1 5 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPT(0.223)S(0.776)PK;YSPT(0.103)S(0.897)PK;YSPT(0.001)S(0.999)PK;YSPT(0.045)S(0.955)PK;YSPT(0.038)S(0.962)PK ;;;; 128.28 0.0019294 8577090000 15254210 14465380 7340310 8627540 13169320 16148500 21307900 19810200 11220820 25339200 TRUE FALSE FALSE 14184968.65 13319090.61 10182674.61 20085349.13 11517501.09 14156262.26 15976438.05 15299849.91 12193449.71 18994099.39 0.746809225 0.701222539 0.536096732 1.057452039 0.606372582 0.745297893 0.841126379 0.805505415 0.641959877 1 24.17904797 -11.25693988 2.294995722 1.990537491 0.74525299 0.242851182 0.136357984 7663900.819 1622363.149 39198880.02 0.033141487 5.53E-12 11.25693988 -1.2452845 YSPTS(ph)PT(ph)YSPTTPK ddPTM_HeLa_A486_30min_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 0 YS(0.003)PT(0.317)S(0.676)PT(0.781)Y(0.136)S(0.086)PTTPK 99.941 0.0010921 0 209790 204710 121410 138180 173010 241560 278240 268840 157900 323160 TRUE FALSE FALSE 195084.8044 188488.0341 168423.2035 321690.0232 151309.4725 211758.7832 208621.4091 207631.0007 171586.8991 242238.6326 0.80534142 0.778108892 0.695278047 1.327988107 0.624629816 0.874174284 0.8612227 0.857134135 0.708338291 1 17.88606944 -11.46719063 2.257458493 2.7965115 0.841623034 0.067133962 0.181618681 5595961.076 881589.4537 51813562.29 0.044286834 3.41E-12 11.46719063 -1.954888465 YSPTS(ph)PTYS(ph)PTSPK ddPTM_HeLa_A485_30min_R1 4 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 0 Y(0.002)S(0.007)PT(0.416)S(0.537)PT(0.018)Y(0.023)S(0.93)PT(0.058)S(0.01)PK;YSPT(0.001)S(0.999)PTYS(0.99)PT(0.009)S(0.001)PK;YSPT(0.026)S(0.972)PT(0.001)Y(0.002)S(0.999)PTSPK;YSPT(0.021)S(0.977)PT(0.002)YS(0.676)PT(0.304)S(0.02)PK ;;; 215.09 4.16E-23 1161760000 902900 856930 688830 1388820 1255620 1047270 1546870 1502200 835930 1894340 TRUE FALSE FALSE 1103746.99 957140.5092 943656.8816 1464687.72 1130606.064 1102103.438 1216368.588 1133783.095 1003693.483 1422115.901 0.776130124 0.673039735 0.663558351 1.029935548 0.795016822 0.774974415 0.855323105 0.797250839 0.705774742 1 20.43960762 -11.52180828 2.229270354 4.083392447 0.788297349 0.294309447 0.099491936 3899750.04 545330.0316 60055332.88 0.027045475 3.01E-12 11.52180828 -3.295095098 YSPTS(ph)PTYS(ph)PTSPK ddPTM_HeLa_A486_30min_R1 3 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 0 Y(0.011)S(0.029)PT(0.41)S(0.539)PT(0.007)Y(0.01)S(0.959)PT(0.02)S(0.015)PK;YSPTS(0.825)PT(0.246)Y(0.065)S(0.847)PT(0.016)S(0.001)PK;YSPTS(0.755)PT(0.244)Y(0.001)S(0.906)PT(0.088)S(0.006)PK ;; 230.57 5.53E-28 2609110000 1151430 1128730 649671 580818 1086160 1223750 1562520 1472500 906940 1663900 TRUE FALSE FALSE 1070720.703 1039285.324 901241.01 1352173.657 949923.6848 1072776.167 1171560.969 1137243.894 985554.2894 1247248.61 0.858466143 0.833262363 0.722583295 1.084125207 0.761615349 0.860114141 0.939316316 0.911802094 0.790182712 1 20.25031763 -14 0.187853114 1.550222025 0.840487112 0.144976217 0.097136687 272.6375191 2.657987308 56.52382831 0.26717364 1.00E-14 14 -0.709734914 YSPTS(ph)PTYSPTS(ph)PK ddPTM_HeLa_A486_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 0 YSPT(0.001)S(0.999)PTYSPT(0.322)S(0.678)PK 282.52 6.89E-49 306010000 495570 471970 218910 358490 446070 531420 739870 688210 369430 914620 TRUE FALSE FALSE 460833.1021 434569.3783 303677.8146 834582.8371 390119.7412 465858.8035 554746.7005 531519.6065 401452.4899 685593.1988 0.672166969 0.63385894 0.442941697 1.21731493 0.569025104 0.679497411 0.809148488 0.775269661 0.585554948 1 19.38699327 -11.6052249 2.133457435 6.590468112 0.714158554 0.163947314 0.196595507 8439019.052 342007.8107 229749134.3 0.050055354 2.48E-12 11.6052249 -5.876309558 YSPTS(ph)PTYSPTSPK ddPTM_HeLa_A485_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTS(0.733)PT(0.237)YS(0.027)PT(0.002)SPK 149.96 5.90E-08 1151600000 623220 635690 553590 777410 842810 720730 1050800 1056900 638970 1067800 TRUE FALSE FALSE 761853.1389 710028.4157 758385.9778 819877.9398 758896.8771 758466.3083 826287.9958 797693.6178 767205.418 801617.1114 0.950395305 0.885745084 0.946070096 1.022779988 0.946707432 0.946170307 1.030776394 0.995105527 0.957072157 1 19.61255378 -5.005151954 23.92587221 0.983978664 0.917529521 0.4389912 0.031159344 115.5143726 536471.8212 0.00822545 0.016353077 9.88E-06 5.005151954 -0.066449143 YSPTS(ph)PTYSPTSPK ddPTM_HeLa_A486_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPT(0.042)S(0.722)PT(0.204)Y(0.001)S(0.029)PT(0.002)SPK 126.09 2.76E-05 1357400000 829900 796860 560480 292340 830510 768540 1017100 922060 714770 917180 TRUE FALSE FALSE 771728.2956 733713.9115 777512.8662 680582.294 726339.6916 673725.3487 762610.8222 712127.0664 776726.8391 687512.1582 1.122494034 1.067201362 1.130907806 0.989920376 1.056475414 0.979946814 1.109232489 1.03580287 1.129764514 1 19.3910257 -5.243553539 24.94192658 1.045203538 1.102901095 0.267117703 0.048235313 1179.367332 1644633.371 0.0126191 0.021811191 5.71E-06 5.243553539 0.057697557 YSPTS(ph)PTYSPTTPK ddPTM_HeLa_A485_30min_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPT(0.025)S(0.969)PT(0.006)YSPTTPK 253.16 1.72E-41 1374600000 1253200 1274200 985880 1372400 1537300 1431300 1868000 2036400 1234500 1926300 TRUE FALSE FALSE 1531970.017 1423206.606 1350598.038 1447370.737 1384241.014 1506240.655 1468886.54 1536969.707 1482252.826 1446108.861 1.059373923 0.984162842 0.933953227 1.000872601 0.957217711 1.041581789 1.015751013 1.062831263 1.024993945 1 20.46374473 -6.275471085 24.90623124 1.032128521 0.984762754 0.272049833 0.03398594 958.7045393 1701691.529 0.011975958 0.010607498 5.30E-07 6.275471085 -0.047365767 YSPTS(ph)PTYSPTTPK ddPTM_HeLa_A486_30min_R1 2 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTS(0.739)PT(0.26)YSPTTPK;YSPT(0.026)S(0.961)PT(0.013)YSPTTPK ; 236.22 3.65E-35 3014600000 4385700 4643500 2605500 1628830 4344400 4456900 5090800 5248100 3624800 5154600 TRUE FALSE FALSE 4078285.078 4275532.149 3614419.378 3791998.557 3799484.842 3907052.992 3817027.995 4053222.195 3939000.583 3863854.609 1.055496516 1.106545815 0.93544394 0.981403013 0.983340531 1.011180126 0.987880855 1.049010019 1.019448447 1 21.88160938 -4.74551233 24.99999101 0.996997684 1.08102119 0.561748096 0.030040304 183.6352569 288239.5247 0.008021467 0.021075814 1.80E-05 4.74551233 0.084023506 YSPTSPTYS(ph)PTSPK ddPTM_HeLa_A485_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPT(0.002)YS(0.954)PT(0.041)S(0.003)PK 261.61 9.05E-42 784480000 357200 378380 238020 501310 504810 374180 557730 571410 290020 581740 TRUE FALSE FALSE 436657.9077 422628.2495 326073.5028 528695.2959 454549.3439 393771.4862 438566.4293 431270.8016 348224.3538 436722.9241 0.999851127 0.967726277 0.74663702 1.21059662 1.040818603 0.901650599 1.004221224 0.987515832 0.797357625 1 18.73635874 -9.418231188 8.809029901 1.000090584 0.965537969 0.007898194 0.122133687 0 0 0.117570929 0.028515139 3.82E-10 9.418231188 -0.034552615 YSPTSPTYS(ph)PTSPK ddPTM_HeLa_A486_30min_R1 2 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPTYS(0.772)PT(0.225)S(0.004)PK;YSPTSPT(0.026)YS(0.966)PT(0.008)SPK ; 275.42 6.69E-49 990380000 618750 548500 308430 265777 558020 581980 771500 732310 513110 826800 TRUE FALSE FALSE 575378.8202 505034.8624 427862.356 618742.2876 488027.9283 510181.2247 578462.5399 565578.9992 557586.7879 619763.8984 0.928383892 0.814882673 0.690363471 0.998351613 0.787441685 0.82318642 0.933359528 0.912571708 0.899676134 1 19.24135919 -7.714482676 0.521859643 0.99815096 0.831165863 0.257345657 0.080393225 1.193993827 0.8163991 0.086139592 0.046168488 1.93E-08 7.714482676 -0.166985097 YSPTSPTYSPT(ph)SPK ddPTM_HeLa_A485_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPT(0.01)YS(0.249)PT(0.683)S(0.058)PK 253.15 8.35E-41 338190000 331340 341940 275640 481860 443380 373670 567400 584490 320510 663530 TRUE FALSE FALSE 405045.4399 381926.9085 377610.7063 508182.7917 399235.5304 393234.7834 446170.3548 441142.9111 384833.4171 498124.1824 0.81314149 0.76673031 0.758065398 1.020192975 0.801477914 0.789431225 0.895701053 0.885608301 0.772565217 1 18.92614593 -14 0.220515535 1.811016187 0.816220315 0.287790588 0.077155616 210.6557268 2.108376637 76.20793809 0.151414097 1.00E-14 14 -0.994795872 YSPTSPTYSPT(ph)SPK ddPTM_HeLa_A486_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPT(0.314)YS(0.156)PT(0.44)S(0.09)PK 208.01 2.04E-21 565820000 517650 482330 289760 265960 482140 483230 599910 609190 362030 637550 TRUE FALSE FALSE 481365.4081 444108.4142 401962.832 619168.3209 421665.5054 423613.9957 449806.1728 470490.7355 393411.0519 477903.3302 1.007244306 0.929285038 0.841096529 1.295593233 0.882323848 0.886401012 0.941207446 0.984489343 0.823202156 1 18.8663593 YSPTSPTYSPTS(ph)PK ddPTM_HeLa_A485_30min_R1 2 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPTYS(0.004)PT(0.185)S(0.811)PK;YSPTSPTYS(0.001)PT(0.244)S(0.754)PK ; 218.63 1.21E-27 581950000 270350 250170 176630 439990 338800 284040 461450 436590 238290 550560 TRUE FALSE FALSE 330488.4248 279425.2053 241972.7872 464025.5396 305067.8824 298911.8952 362857.4378 329515.618 286112.6173 413315.5243 0.799603222 0.676057851 0.585443258 1.122690807 0.738099259 0.7232051 0.877918724 0.797249555 0.692237771 1 18.65688403 -11.53226806 2.14393477 4.029845086 0.781122977 0.188278779 0.137504522 6995671.242 256002.8671 104164213.6 0.035357148 2.94E-12 11.53226806 -3.248722109 YSPTSPTYSPTS(ph)PK ddPTM_HeLa_A486_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPTYSPT(0.001)S(0.999)PK 334.72 2.36E-81 448020000 473560 430240 209920 235610 362190 438130 644090 554090 325700 750360 TRUE FALSE FALSE 440365.8895 396146.2155 291206.6459 548511.9871 316760.7529 384077.9752 482931.8695 427935.8027 353931.9382 562464.972 0.782921447 0.704303797 0.517732944 0.975193149 0.563165297 0.682847812 0.858599013 0.760822138 0.629251519 1 19.10140373 -10.8864595 2.646209879 1.140027541 0.720211044 0.29996186 0.128581646 19978421.59 12032797.22 17485038.41 0.030619213 1.30E-11 10.8864595 -0.419816497 YSPTSPTYSPTT(ph)PK ddPTM_HeLa_A485_30min_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPTYSPT(0.006)T(0.994)PK 136.3 4.50E-05 82360000 107300 101590 70997 144720 130210 123230 177030 165200 93580 222760 TRUE FALSE FALSE 131168.5148 113470.0668 97261.74473 152625.6871 117245.8352 129682.1323 139206.0943 124684.441 112360.6476 167230.0316 0.784359804 0.678526851 0.581604535 0.912669128 0.701105143 0.775471553 0.832422819 0.745586422 0.671892761 1 17.35147443 -11.28536515 2.328076061 2.184428922 0.743479514 0.437706242 0.08750873 5507262.468 1177377.743 34097944.69 0.02288955 5.18E-12 11.28536515 -1.440949408 YSQFINFPIYVWSSK ddPTM_HeLa_A485_30min_R1 2 YSQFINFPIYVWSSK 15 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 322.18 6.00E-82 109930000 170863 175295 163143 206170 239805 186016 283260 285630 145176 282680 FALSE FALSE TRUE 208870.8849 195794.2254 223496.3846 217432.545 215929.1722 195755.5101 222739.187 215578.7946 174311.4916 212213.0783 0.984250766 0.922630344 1.053169703 1.024595405 1.017511144 0.922447908 1.049601602 1.01586008 0.82139844 1 17.69515404 -7.721284254 24.99965257 0.910698315 0.998671936 0.263737471 0.058852274 169.9892806 105831.5526 0.038294428 0.014473535 1.90E-08 7.721284254 0.087973621 YSQFINFPIYVWSSK ddPTM_HeLa_A486_30min_R1 2 YSQFINFPIYVWSSK 15 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 334.53 9.94E-98 114878000 188193 242880 179896 83608 266160 272000 320870 283120 253860 296020 FALSE FALSE TRUE 175001.6425 223633.3042 249556.549 194643.6493 232775.731 238443.4055 240584.9322 218659.7565 275864.7892 221894.6652 0.788669896 1.007835425 1.12466223 0.877189405 1.049037077 1.074579261 1.084230357 0.985421422 1.243224072 1 17.75951546 -4.28233278 3.728536585 1.050367239 0.766324324 0.435797067 0.09021792 0.223091683 5.90704425 0.022006772 0.169172889 5.22E-05 4.28233278 -0.284042915 YSQGDDDGSSSSGGSSVAGSQSTLFKDS(ph)PLR ddPTM_HeLa_A485_30min_R1 1 YSQGDDDGSSSSGGSSVAGSQSTLFKDSPLR 31 1 Q9UH99-3;Q9UH99;Q9UH99-2;B0QY68;B0QY66;B0QY69;B0QY65;B0QY67;B0QY63;B0QY64 Q9UH99-3 SUN2 SUN domain-containing protein 2 1 0 YSQGDDDGSSSSGGSSVAGS(0.005)QS(0.004)T(0.004)LFKDS(0.988)PLR 129.09 1.25E-06 486540000 96654 88730 45981 104310 66334 91126 98652 152770 65189 276690 TRUE FALSE FALSE 118154.3488 99106.20165 62991.28533 110008.1912 59729.55405 95897.21645 77574.19429 115302.918 78271.83435 207716.2751 0.568825668 0.477122949 0.303256378 0.529607953 0.287553558 0.461674062 0.373462283 0.55509814 0.376820903 1 17.66425473 -10.62766055 2.97378257 1.044135193 0.434942382 0.760036995 0.094889447 99848832.26 104758924.4 34142714.66 0.022327761 2.36E-11 10.62766055 -0.609192811 YSRS(ph)PAR ddPTM_HeLa_A485_30min_R1 4 YSRSPAR 7 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 YS(0.001)RS(0.999)PAR;Y(0.002)S(0.02)RS(0.978)PAR;Y(0.013)S(0.023)RS(0.964)PAR;YS(0.004)RS(0.995)PAR ;;; 93.598 0.0029133 610870000 312419 462896 358055 356567 381190 422269 487153 603970 411497 476319 TRUE FALSE FALSE 381915.5287 517027.6605 490514.4444 376045.3523 343237.3852 444378.3519 383068.7819 455845.4105 494080.6734 357581.4393 1.068051881 1.445901839 1.371755887 1.051635546 0.95988591 1.242733271 1.071277029 1.274801655 1.381729081 1 18.44791233 -5.254445766 24.85905653 1.145620222 1.310303066 0.175461769 0.152570581 883.389512 3140032.9 0.042710867 0.071871498 5.57E-06 5.254445766 0.164682844 YSRS(ph)PAR ddPTM_HeLa_A486_30min_R1 4 YSRSPAR 7 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 Y(0.001)S(0.002)RS(0.997)PAR;YSRS(1)PAR;Y(0.001)S(0.014)RS(0.985)PAR;Y(0.002)S(0.012)RS(0.986)PAR ;;; 71.349 0.0097072 391153000 324743 215090 317356 129396 290133 377426 328766 292636 331216 365637 TRUE FALSE FALSE 301980.1927 198045.4851 440244.7423 301240.4273 253741.8138 330863.0175 246505.2695 226009.171 359926.0696 274079.1153 1.101799356 0.7225851 1.606268839 1.099100262 0.925797697 1.207180697 0.899394575 0.824612889 1.313219612 1 18.06423287 -5.532944713 24.40891821 1.021213727 1.143326146 0.045045832 0.239991797 545.0371971 1321648.349 0.070905449 0.091658532 2.93E-06 5.532944713 0.12211242 YSRS(ph)PYSR ddPTM_HeLa_A485_30min_R1 3 YSRSPYSR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 YS(0.021)RS(0.978)PYS(0.001)R;YS(0.002)RS(0.998)PYSR;YS(0.028)RS(0.972)PYSR ;; 110.66 0.00058102 669700000 77827 117814 84361 85904 96646 115897 86641 157722 90752 91017 TRUE FALSE FALSE 95139.34765 131591.3225 115569.6445 90596.718 87023.5849 121965.1877 68129.44256 119040.4322 108965.094 68328.13694 1.39238902 1.925873123 1.691391711 1.325906457 1.273612728 1.784992145 0.997092056 1.74218759 1.594732402 1 16.06019217 -12.03713351 0.26351416 1.67E-31 1.576073548 0.249289906 0.267827437 93.28081612 2.318492429 53.20124584 0.364399803 9.18E-13 12.03713351 1.576073548 YSRS(ph)PYSR ddPTM_HeLa_A486_30min_R1 2 YSRSPYSR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 YS(0.092)RS(0.908)PYSR;YS(0.047)RS(0.953)PYSR ; 96.113 0.0014109 302860000 42855 47520 41301 14718.6 50927 49817 47748 53724 31215 43594 TRUE FALSE FALSE 39851.0858 43754.34214 57293.85328 34265.64464 44539.26078 43671.08504 35800.94537 41492.21799 33920.74133 32677.77865 1.219516364 1.338963171 1.753297061 1.048591613 1.362983123 1.336415352 1.095574634 1.269738021 1.038036939 1 14.9960223 -7.182375264 0.545225937 0.998323053 1.387483979 0.328503025 0.174694354 1.007311123 0.65159556 0.172068106 0.110791653 6.57E-08 7.182375264 0.389160927 YSS(ph)SGS(ph)PANSFHFK ddPTM_HeLa_A485_30min_R1 3 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 Y(0.26)S(0.198)S(0.531)S(0.487)GS(0.524)PANSFHFK;Y(0.12)S(0.296)S(0.426)S(0.416)GS(0.742)PANSFHFK;Y(0.005)S(0.008)S(0.495)S(0.495)GS(0.998)PANSFHFK ;; 102.37 0.00050353 2750350000 844810 1025740 902420 586770 1371760 828220 1038550 1085640 856540 865310 TRUE FALSE FALSE 1032735.07 1145691.37 1236262.711 618823.7593 1235182.758 871584.3185 816655.3083 819385.0878 1028439.721 649604.1419 1.589791387 1.763676209 1.903101645 0.952616708 1.901439166 1.341716073 1.257158407 1.261360627 1.583179132 1 19.30920131 -1.000000015 0.056043136 0.270103244 3.835806187 0.302209951 0.274375976 474.0742518 1.997901713 27.35041856 140.8070205 0.099999996 1.000000015 3.565702943 YSS(ph)SGS(ph)PANSFHFK ddPTM_HeLa_A486_30min_R1 2 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 Y(0.041)S(0.09)S(0.805)S(0.239)GS(0.825)PANSFHFK;Y(0.027)S(0.09)S(0.669)S(0.226)GS(0.988)PANSFHFK ; 112.3 0.00022375 1995710000 1396820 1477790 1138160 70362 1664410 1158640 1362570 1329850 1318900 795960 TRUE FALSE FALSE 1298910.131 1360684.538 1578886.033 163806.2919 1455644.178 1015698.777 1021640.574 1027072.185 1433223.314 596646.4352 2.177018171 2.280554208 2.646267437 0.274544994 2.439709838 1.702346175 1.712304832 1.7214084 2.402131697 1 19.18651674 YSS(ph)TETLKDDDLWSSR ddPTM_HeLa_A485_30min_R1 2 YSSTETLKDDDLWSSR 16 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 YS(0.103)S(0.692)T(0.103)ET(0.103)LKDDDLWSSR;YS(0.041)S(0.784)T(0.162)ET(0.013)LKDDDLWSSR ; 74.776 0.0031999 403370000 215749 199740 160834 316170 285970 218240 332820 344010 207801 402360 TRUE FALSE FALSE 263741.6207 223097.8555 220333.1895 333441.5665 257497.8227 229666.7089 261710.2881 259641.0081 249504.7546 302059.0569 0.873145879 0.738590188 0.729437454 1.103895278 0.852475093 0.760337105 0.866420927 0.859570346 0.826013155 1 18.20447112 -11.591873 1.961972453 3.243022607 0.845305361 0.175672366 0.100374252 4440096.703 200819.5754 44411939.96 0.026051596 2.56E-12 11.591873 -2.397717246 YSS(ph)TETLKDDDLWSSR ddPTM_HeLa_A486_30min_R1 1 YSSTETLKDDDLWSSR 16 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 YS(0.006)S(0.968)T(0.011)ET(0.015)LKDDDLWSSR 104.84 0.00013041 180820000 194430 205590 97653 96630 173770 203400 257240 259030 147790 280380 TRUE FALSE FALSE 180801.461 189298.2997 135466.8568 224959.5234 151974.1463 178306.576 192875.8312 200054.5236 160600.5562 210171.023 0.860258748 0.900686959 0.644555348 1.070364126 0.723097523 0.84838801 0.917708961 0.951865394 0.764142239 1 17.68120425 -13.99999992 0.220202906 1.723783002 0.838009787 0.121330138 0.115225783 327.3432953 3.276058681 105.2365293 0.210817599 1.00E-14 13.99999992 -0.885773216 YSS(ph)YQGSR ddPTM_HeLa_A485_30min_R1 1 YSSYQGSR 8 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 YS(0.056)S(0.944)YQGSR 80.758 0.0060393 0 195360 279290 274830 187770 324850 263540 284750 342790 309900 239470 TRUE FALSE FALSE 238817.158 311950.536 376501.0536 198027.3996 292506.7934 277338.5469 223910.8363 258720.215 372094.0874 179774.5361 1.328425945 1.735232045 2.094295787 1.101531974 1.627075779 1.542702058 1.245509187 1.439137158 2.069781936 1 17.45582916 -5.263987876 24.99827028 1.455484951 1.720909319 0.134936337 0.329421197 494.1497508 4847138.248 0.090244882 0.141195824 5.45E-06 5.263987876 0.265424368 YSS(ph)YQGSR ddPTM_HeLa_A486_30min_R1 1 YSSYQGSR 8 0 Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;Q5VWV2;Q8TEW0-7;Q8TEW0-6;Q8TEW0-3;Q8TEW0-5 Q8TEW0-4 PARD3 Partitioning defective 3 homolog 1 0 YS(0.085)S(0.915)YQGSR 80.758 0.0085945 130870000 140640 174840 172000 47496 202170 155020 178550 181090 148040 145430 TRUE FALSE FALSE 130781.8623 160985.0416 238603.0063 110573.0883 176811.9534 135895.2085 133874.9015 139859.7602 160872.2264 109013.3814 1.199686319 1.476745695 2.188749704 1.014307481 1.621928897 1.246591994 1.228059342 1.282959563 1.475710819 1 16.73414571 YSSEVATES(ph)PLDFTK ddPTM_HeLa_A485_30min_R1 1 YSSEVATESPLDFTK 15 0 Q8WTT2 Q8WTT2 NOC3L Nucleolar complex protein 3 homolog 1 0 YSSEVAT(0.001)ES(0.999)PLDFTK 213.94 2.75E-26 59714000 110560 109880 90295 124870 147210 106580 162680 192210 94590 196100 TRUE FALSE FALSE 135153.6906 122729.5102 123698.878 131691.3319 132553.2555 112160.364 127922.089 145070.1961 113573.3454 147215.879 0.918064624 0.833670329 0.840254997 0.894545703 0.900400531 0.761876808 0.868942195 0.985424923 0.771474831 1 17.16757377 -10.63635897 3.067250076 1.010350065 0.86497295 0.291942323 0.063588021 77795250.63 83222048.71 6406041.544 0.01543849 2.31E-11 10.63635897 -0.145377115 YSSS(ph)GS(ph)PANSFHFK ddPTM_HeLa_A485_30min_R1 3 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 YS(0.004)S(0.058)S(0.938)GS(0.992)PANS(0.008)FHFK;YSS(0.39)S(0.63)GS(0.98)PANSFHFK;YS(0.003)S(0.013)S(0.984)GS(1)PANSFHFK ;; 240.2 5.74E-35 532950000 723650 1091140 895870 472730 1322600 889800 1112070 1259480 893030 941170 TRUE FALSE FALSE 884623.4459 1218739.331 1227289.593 498554.0429 1190917.3 936388.5521 874467.1597 950590.5552 1072252.93 706553.64 1.252025884 1.724907017 1.73700838 0.705613862 1.68552992 1.325290111 1.237651482 1.3453905 1.517581779 1 19.43043957 -12.99833491 0.183453852 2.57E-13 1.472721087 0.130462203 0.293621142 193.0923049 2.606345831 73.8206696 0.904802903 1.00E-13 12.99833491 1.472721087 YSSS(ph)GS(ph)PANSFHFK ddPTM_HeLa_A486_30min_R1 2 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 YS(0.001)S(0.006)S(0.993)GS(1)PANSFHFK;Y(0.001)S(0.006)S(0.059)S(0.935)GS(0.999)PANSFHFK ; 136.7 8.14E-06 1123400000 1336480 1404800 988950 89360 1537620 1140320 1297250 1283270 1163600 843720 TRUE FALSE FALSE 1242799.654 1293478.532 1371897.925 208034.596 1344757.362 999638.9123 972664.3291 991097.4346 1264461.785 632447.0203 1.965065237 2.045196657 2.169190274 0.328936005 2.126276698 1.580589172 1.537938037 1.567083728 1.999316534 1 19.27058511 YSSS(ph)GSPANSFHFK ddPTM_HeLa_A486_30min_R1 3 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 YS(0.071)S(0.053)S(0.438)GS(0.438)PANSFHFK;YS(0.009)S(0.105)S(0.781)GS(0.105)PANSFHFK;YS(0.018)S(0.061)S(0.535)GS(0.385)PANSFHFK ;; 154.52 2.34E-08 973710000 1109310 1253770 966980 162921 1499460 1129130 1253150 1277780 1334070 722090 TRUE FALSE FALSE 1031553.097 1154416.699 1341420.553 379288.3216 1311383.745 989829.4208 939598.6155 986857.3877 1449708.262 541273.964 1.905787394 2.13277707 2.478265429 0.700732618 2.422772629 1.828703183 1.735902109 1.823212372 2.678326242 1 19.04599947 YSSSGS(ph)PANSFHFK ddPTM_HeLa_A485_30min_R1 2 YSSSGSPANSFHFK 14 0 O00418;H3BRH4 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 YS(0.011)S(0.027)S(0.237)GS(0.724)PANSFHFK;YSSSGS(0.999)PANSFHFK ; 157.47 1.06E-08 715750000 513720 910020 903930 402900 1261350 904410 1253000 1340620 1024650 900370 TRUE FALSE FALSE 627995.2417 1016438.923 1238331.323 424909.4068 1135765.565 951763.5091 985286.3139 1011830.843 1230287.856 675924.3291 0.929091046 1.503776206 1.832056148 0.62863458 1.680314669 1.408091806 1.457687305 1.496958756 1.820156197 1 19.36650222 YSSSSIPEPFGS(ph)RGSPR ddPTM_HeLa_A486_30min_R1 2 YSSSSIPEPFGSRGSPR 17 1 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 YSSSSIPEPFGS(0.7)RGS(0.3)PR;YSSS(0.001)S(0.067)IPEPFGS(0.844)RGS(0.087)PR ; 128.06 0.00021034 995090000 589620 588590 530740 228900 768970 512090 640640 650560 441690 602500 TRUE FALSE FALSE 548290.6828 541947.9848 736256.7417 532890.768 672518.6122 448913.5423 480345.096 502441.6896 479976.0448 451630.0784 1.214026056 1.199982044 1.630220787 1.179927541 1.489091724 0.993985042 1.063580835 1.112507146 1.062763682 1 18.78478205 -6.272283242 24.99343381 1.054662371 1.341659715 0.551882642 0.133298474 575.0977003 1325508.104 0.045867689 0.040837678 5.34E-07 6.272283242 0.286997344 YSSSSIPEPFGSRGS(ph)PR ddPTM_HeLa_A485_30min_R1 4 YSSSSIPEPFGSRGSPR 17 1 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 YSSSSIPEPFGS(0.367)RGS(0.633)PR;YSSSSIPEPFGS(0.124)RGS(0.876)PR;YSSSSIPEPFGS(0.048)RGS(0.952)PR;YSSSSIPEPFGS(0.326)RGS(0.673)PR ;;; 93.73 0.0003592 8561820000 1693300 2266710 1929180 1288850 2618080 2020190 2185030 2598250 1623310 1778060 TRUE FALSE FALSE 2069968.743 2531782.017 2642863.962 1359256.612 2357414.763 2125964.025 1718180.49 1961025.114 1949093.427 1334822.365 1.550744727 1.896718308 1.97993683 1.018305243 1.766088751 1.592694339 1.287197859 1.469128152 1.460189369 1 20.34821633 -9.550959751 0.079980843 8.33E-14 2.37797728 0.376288256 0.249680235 72.96397148 1.386892261 28.68057946 13.3920169 2.81E-10 9.550959751 2.37797728 YSSSSIPEPFGSRGS(ph)PR ddPTM_HeLa_A486_30min_R1 4 YSSSSIPEPFGSRGSPR 17 1 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 YSSSSIPEPFGS(0.208)RGS(0.792)PR;YSSSSIPEPFGS(0.004)RGS(0.996)PR;YSSSSIPEPFGS(0.017)RGS(0.983)PR;YSSSSIPEPFGS(0.008)RGS(0.992)PR ;;; 177.09 3.14E-13 4835820000 2726640 2675740 2440100 952220 3454110 2341080 2901600 2883450 2078000 2643730 TRUE FALSE FALSE 2535516.616 2463704.618 3384972.068 2216816.283 3020863.316 2052261.352 2175588.99 2226951.38 2258122.713 1981722.8 1.279450696 1.24321354 1.708095637 1.118630861 1.524362194 1.03559456 1.097827098 1.123745147 1.139474559 1 20.91832374 -6.27434197 24.81093747 1.088218507 1.37173327 0.475625372 0.154939641 647.6923525 1245471.45 0.052342258 0.046447887 5.32E-07 6.27434197 0.283514763 YSTPHAFTFNTSS(ph)PSSEGSLSQR ddPTM_HeLa_A485_30min_R1 1 YSTPHAFTFNTSSPSSEGSLSQR 23 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 YSTPHAFTFNT(0.004)S(0.274)S(0.681)PS(0.016)S(0.025)EGS(0.001)LSQR 133.75 1.30E-06 197210000 44939 93286 83324 72802 101430 80518 88484 106750 81872 81835 TRUE FALSE FALSE 54935.52551 104194.9862 114149.015 76778.98892 91331.27306 84733.79798 69578.67055 80569.39512 98302.95943 61435.04056 0.894205082 1.69601884 1.858044106 1.249758903 1.486631607 1.379242159 1.132556761 1.311456693 1.600112225 1 15.90677414 -6.525809856 24.52067364 1.282545175 1.461183578 0.075893047 0.279905608 202.0240278 1690013.153 0.106724828 0.083163636 2.98E-07 6.525809856 0.178638403 YSTPHAFTFNTSS(ph)PSSEGSLSQR ddPTM_HeLa_A486_30min_R1 1 YSTPHAFTFNTSSPSSEGSLSQR 23 0 P04049;P04049-2;H7C155 P04049 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 YSTPHAFTFNT(0.005)S(0.324)S(0.652)PS(0.016)S(0.003)EGSLSQR 98.151 0.00079367 191000000 76655 77915 63149 36684 112800 62863 95386 89326 71072 68917 TRUE FALSE FALSE 71281.88035 71740.73164 87601.98399 85402.20591 98651.57218 55107.6022 71519.41391 68988.41977 77232.57818 51659.73463 1.379834427 1.388716612 1.695749787 1.653167724 1.909641482 1.066741876 1.384432468 1.335438911 1.495024679 1 15.65675261 -6.271628869 24.99801283 1.285299087 1.601053575 0.437355162 0.19657666 792.0534136 1943150.424 0.071082715 0.063399094 5.35E-07 6.271628869 0.315754488 YSTSLSWIHLLKPLVHLQLPR ddPTM_HeLa_A485_30min_R1 1 YSTSLSWIHLLKPLVHLQLPR 21 1 Q9NUY8-2;Q9NUY8;C9IZ32;C9JAM5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 0 0 232.18 7.86E-43 5490500 5848.1 4621.7 5342 3717.7 4902.6 3838.4 7438.9 5647.1 2958.4 7069.2 FALSE FALSE TRUE 7148.989669 5162.167612 7318.228099 3920.788537 4414.47993 4039.372689 5849.518245 4262.139871 3552.123744 5306.978539 1.347092252 0.972713112 1.378982041 0.738798642 0.831825472 0.761143588 1.102231374 0.803119862 0.669330716 1 12.373675 -5.268050747 24.97516498 0.842402881 1.206907537 0.562857373 0.156653151 382.4610099 1444788.472 0.042757196 0.065113144 5.39E-06 5.268050747 0.364504656 YSTSLSWIHLLKPLVHLQLPR ddPTM_HeLa_A486_30min_R1 2 YSTSLSWIHLLKPLVHLQLPR 21 1 Q9NUY8-2;Q9NUY8;C9IZ32;C9JAM5 Q9NUY8-2 TBC1D23 TBC1 domain family member 23 0 0 ; ; 163.66 3.96E-17 12673600 4428.7 5544.8 3631.2 2901.5 6006.6 4483.2 5241.1 5613.4 4508.86 7208.5 FALSE FALSE TRUE 4118.271 5105.409854 5037.297887 6754.838634 5253.196219 3930.108366 3929.721345 4335.35136 4899.691615 5403.444681 0.762156595 0.94484355 0.932238264 1.250098601 0.972193948 0.727333876 0.727262252 0.802331034 0.906771866 1 12.3996637 -6.190124387 8.467401194 0.813939171 0.984490186 0.201855576 0.135195926 0.525012095 58.24035896 0.046496374 0.046493157 6.45E-07 6.190124387 0.170551015 YSVEAS(ph)SPGHGS(ph)PLSSLLPSASVPESMTISELR ddPTM_HeLa_A485_30min_R1 1 YSVEASSPGHGSPLSSLLPSASVPESMTISELR 33 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 2 0 Y(0.01)S(0.019)VEAS(0.508)S(0.508)PGHGS(0.693)PLS(0.129)S(0.134)LLPSASVPESMTISELR 56.005 0.017287 56431000 15937 21496 21952 14754 26403 16942 22378 22483 14286 20055 TRUE FALSE FALSE 19482.13067 24009.77021 30072.9583 15559.97366 23774.22461 17829.05692 17596.75749 16969.009 17153.06916 15055.65758 1.29400729 1.594734077 1.997452328 1.033496782 1.579089089 1.184209778 1.1687804 1.12708521 1.139310526 1 13.8780181 -6.17777861 0.876676678 1.083726391 1.577039664 0.397983974 0.232407848 0.609830335 1.018813373 0.140591151 0.142828366 6.64E-07 6.17777861 0.493313273 YSVEAS(ph)SPGHGSPLSSLLPSASVPESMTISELR ddPTM_HeLa_A485_30min_R1 1 YSVEASSPGHGSPLSSLLPSASVPESMTISELR 33 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 1 0 YS(0.002)VEAS(0.529)S(0.464)PGHGS(0.005)PLSSLLPSASVPESMTISELR 114.03 4.45E-05 67924000 19488 44414 42789 11133 57902 26881 34264 41032 36350 26280 TRUE FALSE FALSE 23823.03837 49607.83095 58618.4317 11741.1676 52137.07357 28288.44759 26943.21649 30968.83766 43645.11158 19728.87965 1.207521096 2.514477854 2.971199214 0.595125917 2.642677866 1.433859809 1.365673924 1.569721049 2.212244809 1 14.26802141 -5.244491983 24.89699641 1.602910023 2.259407065 0.172987204 0.67791371 1437.553114 2111870.155 0.178143213 0.307528461 5.70E-06 5.244491983 0.656497043 YSVEASS(ph)PGHGS(ph)PLSSLLPSASVPESMTISELR ddPTM_HeLa_A485_30min_R1 1 YSVEASSPGHGSPLSSLLPSASVPESMTISELR 33 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 2 0 Y(0.011)S(0.016)VEAS(0.529)S(0.555)PGHGS(0.853)PLS(0.019)S(0.018)LLPSASVPESMTISELR 64.79 0.0050654 34941000 8349.1 8404.8 11762 3150.6 12997 7636.5 7037.6 8806.6 9254.5 5949.8 TRUE FALSE FALSE 10206.32849 9387.668248 16113.25326 3322.7093 11702.97304 8036.335332 5533.959268 6646.767542 11111.79326 4466.624358 2.28502056 2.10173668 3.60747893 0.743897188 2.62009341 1.799196594 1.23895784 1.488096381 2.487738474 1 12.12496921 -5.263855862 24.99985012 1.678345193 2.608444476 0.333328927 0.669226426 268.7919379 2780810.649 0.181428683 0.284080559 5.45E-06 5.263855862 0.930099283 YSVEASS(ph)PGHGS(ph)PLSSLLPSASVPESMTISELR ddPTM_HeLa_A486_30min_R1 2 YSVEASSPGHGSPLSSLLPSASVPESMTISELR 33 0 Q8TEQ0;Q8TEQ0-2;H3BQF0 Q8TEQ0 SNX29 Sorting nexin-29 2 0 Y(0.009)S(0.07)VEAS(0.441)S(0.462)PGHGS(0.75)PLS(0.135)S(0.131)LLPS(0.001)ASVPESMTISELR;Y(0.001)S(0.003)VEAS(0.218)S(0.774)PGHGS(0.953)PLS(0.03)S(0.021)LLPSASVPESMTISELR ; 63.295 0.0071464 99277000 34356 31318 24868 3599.6 39044 24844 29077 29122 30393 27334 TRUE FALSE FALSE 31947.82181 28836.24762 34497.55559 8380.050714 34146.73745 21778.99988 21801.62705 22491.55633 33027.48971 20489.38849 1.559237448 1.407374732 1.683679121 0.408994672 1.666557178 1.062940453 1.064044789 1.097717306 1.611931451 1 14.32258931 YSVEEEQRAGTVIANVAK ddPTM_HeLa_A485_30min_R1 2 YSVEEEQRAGTVIANVAK 18 1 Q8TAB3-3;Q8TAB3-2;Q8TAB3 Q8TAB3-3 PCDH19 Protocadherin-19 0 0 ; ; 53.828 0.033358 106493000 177334 63262 68440 498550 165933 184018 254810 221120 136645 537100 FALSE FALSE TRUE 216781.3365 70659.94059 93758.80403 525784.5241 149412.1279 193652.8979 200367.7619 166889.9733 164068.3981 403210.8546 0.53763765 0.175243151 0.232530456 1.303993973 0.370555818 0.480276996 0.496930476 0.413902482 0.406904716 1 18.62117495 -11.13449809 2.268321307 2.025799421 0.491981188 0.213889431 0.292801445 32947890.1 8206039.003 173909138.9 0.077203837 7.34E-12 11.13449809 -1.533818233 YSVGSLS(ph)PVSASVLK ddPTM_HeLa_A486_30min_R1 2 YSVGSLSPVSASVLK 15 0 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 YSVGS(0.001)LS(0.999)PVS(0.001)ASVLK;YSVGSLS(1)PVSASVLK ; 217.39 1.81E-33 327280000 931230 986860 579590 518290 1040440 1206670 1668070 1488740 952690 1504060 TRUE FALSE FALSE 865955.5859 908657.6195 804022.77 1206605.313 909938.3135 1057803.324 1250701.243 1149786.401 1035269.936 1127433.586 0.768076804 0.805952236 0.713144242 1.070222963 0.807088173 0.938240032 1.109334739 1.019826281 0.918253588 1 20.10461102 -5.384529775 0.817970051 1.003533142 0.740296301 0.47881733 0.093152153 0.704247792 0.893738914 0.044688124 0.126346369 4.13E-06 5.384529775 -0.263236842 YSVLNNDDYFADVS(ph)PLR ddPTM_HeLa_A485_30min_R1 2 YSVLNNDDYFADVSPLR 17 0 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR ; 310.97 4.97E-79 1037680000 568850 610820 588490 552760 736760 607440 708390 665580 605670 800460 TRUE FALSE FALSE 695388.72 682250.0856 806196.9401 582955.8791 663405.5875 639244.6191 557036.6895 502345.4614 727222.4135 600920.0534 1.157206713 1.135342516 1.341604321 0.97010555 1.103983107 1.06377648 0.926973041 0.835960555 1.210181636 1 19.19681354 -5.280768519 24.85402214 1.010984754 1.203780331 0.407077916 0.107910416 736.1355328 946544.935 0.030577586 0.045433371 5.24E-06 5.280768519 0.192795576 YSVLNNDDYFADVS(ph)PLR ddPTM_HeLa_A486_30min_R1 3 YSVLNNDDYFADVSPLR 17 0 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR ;; 299.23 1.46E-68 1189670000 868110 1004540 811810 319330 935050 826810 890180 911960 904190 1074930 TRUE FALSE FALSE 807259.9719 924936.5919 1126164.573 743416.378 817767.31 724806.5886 667447.5486 704326.6159 982565.9172 805760.5314 1.001860901 1.147905061 1.397641767 0.922626946 1.014901175 0.899531015 0.828344803 0.874114068 1.219426714 1 19.61999161 -5.303092165 24.9284292 0.953905174 1.179013045 0.34886525 0.135115874 497.0136187 297452.4947 0.038619701 0.05728281 4.98E-06 5.303092165 0.225107871 YSVLNNDDYFADVS(ph)PLRAT(ph)SPSK ddPTM_HeLa_A486_30min_R1 1 YSVLNNDDYFADVSPLRATSPSK 23 1 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 2 0 YSVLNNDDYFADVS(1)PLRAT(0.855)S(0.144)PS(0.001)K 86.145 0.0022705 94434000 135630 108200 75827 91204 169840 145220 232670 208470 91049 223550 TRUE FALSE FALSE 126123.0374 99625.83794 105189.2451 212327.5212 148537.0835 127304.2329 174453.5051 161005.9319 98941.20063 167571.6249 0.752651515 0.594526895 0.62772707 1.267085172 0.886409519 0.759700414 1.04106829 0.960818587 0.590441256 1 17.35441835 YSVQTADHR ddPTM_HeLa_A485_30min_R1 4 YSVQTADHR 9 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 148.91 8.38E-05 656476000 488756 650736 629797 453406 807749 611417 774527 826394 588328 669732 FALSE FALSE TRUE 597478.086 726833.9145 862785.1183 478174.4217 727326.6734 643429.8487 609042.9791 623719.5758 706400.0331 502780.1379 1.188348626 1.445629729 1.716028644 0.951060684 1.446609797 1.279743968 1.211350515 1.240541399 1.404987946 1 18.93956813 -13.51146398 0.16568041 5.16E-16 1.404050645 0.195599894 0.192672459 181.7598854 1.964841907 60.8530682 0.754624461 3.08E-14 13.51146398 1.404050645 YSVQTADHR ddPTM_HeLa_A486_30min_R1 4 YSVQTADHR 9 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 132.91 0.00074628 563710000 493738 568849 487545 120743 732960 516868 596587 615615 507783 542159 FALSE FALSE TRUE 459129.5159 523771.3335 676335.4809 281095.806 641025.3222 453102.0813 447314.6225 475452.9033 551798.0393 406398.8575 1.129751 1.288811038 1.664216 0.691674695 1.577330522 1.114919673 1.100678839 1.169916929 1.357774583 1 18.63253682 -14 0.184302924 0.067678781 1.275767261 0.062866597 0.258144394 408.6779351 3.962400371 140.5741359 0.730728976 1.00E-14 14 1.20808848 YT(ph)T(ph)T(ph)QQVVKLIGS(ph)HTISKVTVKIGDLK ddPTM_HeLa_A486_30min_R1 1 YTTTQQVVKLIGSHTISKVTVKIGDLK 27 3 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 4 0 Y(0.481)T(0.557)T(0.557)T(0.557)QQVVKLIGS(0.557)HT(0.557)IS(0.557)KVT(0.177)VKIGDLK 50.029 0.014706 158930000 35736 48051 76780 6836.3 125560 30065 26597 46169 51065 10899 TRUE FALSE FALSE 33231.09094 44243.26376 106511.2722 15915.25189 109811.094 26355.88598 19942.14929 35657.32656 55491.35532 8169.819459 4.067542876 5.415451832 13.03716352 1.948054295 13.4410674 3.226005925 2.440953486 4.364518303 6.792237649 1 12.99608848 YTGEEDGAGGHS(ph)PAPPQTEECLR ddPTM_HeLa_A485_30min_R1 2 YTGEEDGAGGHSPAPPQTEECLR 23 0 O94762-4;O94762;J3KS37;J3KSV9 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 0 YTGEEDGAGGHS(1)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR ; 194.89 9.53E-22 1583630000 229585 252747 297259 297200 316709 253042 268738 206353 250824 342716 TRUE FALSE FALSE 280655.3912 282303.563 407227.4741 313435.2834 285176.3399 266290.8878 211319.9309 155744.6032 301162.0761 257283.2084 1.090842239 1.0972483 1.582798491 1.218250057 1.108414116 1.035010755 0.821351429 0.605343054 1.170546955 1 17.97299778 -6.252749593 1.841732997 0.873145923 1.254785001 0.398635412 0.186996142 0.336411631 2.248075671 0.078774703 0.072492771 5.59E-07 6.252749593 0.381639078 YTGEEDGAGGHS(ph)PAPPQTEECLR ddPTM_HeLa_A486_30min_R1 2 YTGEEDGAGGHSPAPPQTEECLR 23 0 O94762-4;O94762;J3KS37;J3KSV9 O94762-4 RECQL5 ATP-dependent DNA helicase Q5 1 0 YTGEEDGAGGHS(1)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR ; 233.2 2.14E-39 2379800000 437970 563800 500180 156990 600350 518750 623010 537470 501900 436120 TRUE FALSE FALSE 407270.5647 519122.4347 693863.0913 365480.6538 525048.505 454751.8993 467126.3085 415099.8139 545405.0961 326912.7133 1.245808279 1.587954257 2.122472033 1.117976264 1.606081634 1.391049906 1.42890224 1.26975733 1.668350828 1 18.31854596 -12.20696033 0.21140213 1.98E-12 1.579774409 0.224824763 0.269039037 93.26028456 1.834631486 42.02100394 0.594035789 6.21E-13 12.20696033 1.579774409 YTIAALLSPY(ph)S(ph)YSTTAVVTNPKE ddPTM_HeLa_A485_30min_R1 1 YTIAALLSPYSYSTTAVVTNPKE 23 1 A0A087WT59;P02766 A0A087WT59 TTR Transthyretin 2 0 YTIAALLS(0.008)PY(0.292)S(0.314)Y(0.292)S(0.338)T(0.34)T(0.33)AVVT(0.086)NPKE 48.337 0.027674 265440000 33636 146320 207660 13464 101660 84877 40365 59006 110250 14279 TRUE FALSE FALSE 41118.21216 163430.8512 284482.0755 14199.50423 91538.37345 89321.02848 31740.688 44534.68598 132376.1637 10719.50809 3.835830136 15.24611483 26.53872484 1.324641403 8.539419227 8.332567853 2.961020948 4.154545678 12.34908941 1 13.38795108 -5.29359031 24.99911579 5.790475333 15.2108222 0.347817212 6.068953649 725.3207676 563975.2274 1.712310794 2.539991666 5.09E-06 5.29359031 9.420346867 YTIAALLSPY(ph)SYS(ph)TTAVVTNPKE ddPTM_HeLa_A485_30min_R1 1 YTIAALLSPYSYSTTAVVTNPKE 23 1 A0A087WT59;P02766 A0A087WT59 TTR Transthyretin 2 0 YTIAALLS(0.007)PY(0.421)S(0.409)Y(0.187)S(0.262)T(0.256)T(0.248)AVVT(0.211)NPKE 55.994 0.018435 420220000 14272 58753 76146 5091.1 40455 32799 17548 24713 44502 8775 TRUE FALSE FALSE 17446.75716 65623.65227 104315.5741 5369.213902 36427.15815 34516.30492 13798.72645 18652.098 53433.1432 6587.553992 2.648442378 9.961763099 15.83525148 0.815054254 5.529694056 5.239623837 2.094666163 2.83141482 8.111226605 1 12.68552717 -5.284372262 24.99974675 3.815018335 9.529815364 0.350471759 3.627349721 864.4535842 942361.9286 1.021629915 1.516439335 5.20E-06 5.284372262 5.714797029 YTIGDIFVHS(ph)PQR ddPTM_HeLa_A485_30min_R1 3 YTIGDIFVHSPQR 13 0 Q9P2F8 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 YTIGDIFVHS(1)PQR;YTIGDIFVHS(1)PQR;YTIGDIFVHS(1)PQR ;; 162.41 6.40E-12 206070000 309097 372563 345704 285841 423986 349236 413090 443270 307095 402472 TRUE FALSE FALSE 377854.5613 416131.002 473594.2955 301455.77 381772.4651 367521.4569 324829.9469 334557.3375 368726.1497 302143.1373 1.250581313 1.37726445 1.567450116 0.997725028 1.263548358 1.216381945 1.075086298 1.107280941 1.220369104 1 18.20487265 -5.265652621 24.99982596 1.137644691 1.396315207 0.55746422 0.110969457 272.9532703 1619606.987 0.030791072 0.04759158 5.42E-06 5.265652621 0.258670516 YTIGDIFVHS(ph)PQR ddPTM_HeLa_A486_30min_R1 2 YTIGDIFVHSPQR 13 0 Q9P2F8 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 YTIGDIFVHS(1)PQR;YTIGDIFVHS(1)PQR ; 159.88 2.29E-10 217900000 311700 317750 258670 110505 357010 290770 335930 337560 278130 351260 TRUE FALSE FALSE 289851.4396 292570.3328 358833.9514 257261.2246 312230.4768 254897.7537 251876.7609 260704.9569 302238.5323 263302.2097 1.100831778 1.111157909 1.362821648 0.977056839 1.185825509 0.968080572 0.956607091 0.990135849 1.147876931 1 18.0063601 -5.890401623 1.537441363 1.013414499 1.167443734 0.259869237 0.105374202 0.516197315 2.523063673 0.040316996 0.049160847 1.29E-06 5.890401623 0.154029235 YTILIK ddPTM_HeLa_A486_30min_R1 2 YTILIK 6 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 0 0 ; ; 126.04 0.018105 78400000 125473 170646 124386 61877 225380 192902 219740 198918 180677 182069 FALSE FALSE TRUE 116677.9906 157123.3895 172551.5904 144052.7831 197110.7388 169103.7125 164758.7278 153628.7137 196338.2278 136477.7373 0.854923249 1.151274871 1.264320421 1.055503893 1.444270272 1.239057123 1.207220541 1.125668675 1.438609928 1 17.05830611 -4.266123886 2.68946409 1.228650522 0.783113545 0.392278919 0.136227902 0.436275862 4.246584376 0.033250173 0.432511868 5.42E-05 4.266123886 -0.445536977 YTKS(ph)PGKNSSIQLK ddPTM_HeLa_A485_30min_R1 1 YTKSPGKNSSIQLK 14 2 F5H619;Q86XA9-2;Q86XA9;H7C5W6 F5H619 HEATR5A HEAT repeat-containing protein 5A 1 0 Y(0.004)T(0.238)KS(0.744)PGKNS(0.007)S(0.007)IQLK 43.946 0.03205 377750000 489240 538360 358080 419860 783420 790560 1306000 1693000 513350 798460 TRUE FALSE FALSE 598069.7501 601316.5189 490548.693 442795.8887 705419.954 831952.4992 1026962.431 1277789.095 616374.6363 599418.6166 0.997749709 1.003166239 0.818374137 0.738708936 1.176840249 1.387932367 1.713264157 2.131714065 1.028287443 1 19.19320437 -6.163632913 2.404190283 1.554173215 0.896279333 0.391160036 0.319339036 0.268115636 3.036125654 0.116717989 0.114965944 6.86E-07 6.163632913 -0.657893882 YTVPLPS(ph)PVQDSENLSGESGTFYEGTDDKVRR ddPTM_HeLa_A486_30min_R1 1 YTVPLPSPVQDSENLSGESGTFYEGTDDKVRR 32 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 YT(0.002)VPLPS(0.959)PVQDS(0.039)ENLSGESGTFYEGTDDKVRR 83.088 0.00022886 70007000 60042 45922 31623 21278 77643 42479 60361 68063 32727 65105 TRUE FALSE FALSE 55833.36586 42282.97347 43868.27249 49536.25933 67904.29095 37238.37287 45258.03937 52566.5407 35563.80271 48802.28424 1.144072798 0.866413819 0.898897934 1.015039769 1.391416242 0.763045695 0.927375431 1.077132793 0.728732338 1 15.57466106 YVASVLGLTPS(ph)PR ddPTM_HeLa_A486_30min_R1 2 YVASVLGLTPSPR 13 0 Q99666;O14715;F8W705;Q99666-2;C9J1W9;C9JF75 Q99666 RGPD5;RGPD8;RGPD6 RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 1 0 YVASVLGLT(0.001)PS(0.999)PR;YVASVLGLT(0.018)PS(0.982)PR ; 172.09 3.47E-12 351960000 301480 335210 302180 107953 382320 287700 313650 336530 278240 316920 TRUE FALSE FALSE 280347.8088 308646.7388 419192.1887 251320.0396 334365.8606 252206.4991 235171.4525 259909.4654 302358.0672 237561.1692 1.180107885 1.299230593 1.76456527 1.057917169 1.407493749 1.061648669 0.989940626 1.09407386 1.272758794 1 17.85793951 -6.266629291 24.45670163 1.083705006 1.347203172 0.326232079 0.185436863 400.2377945 1886056.129 0.064614204 0.058718397 5.41E-07 6.266629291 0.263498166 YVASYLLAALGGNS(ph)SPSAK ddPTM_HeLa_A485_30min_R1 1 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 YVASYLLAALGGNS(0.839)S(0.138)PS(0.023)AK 117.26 2.84E-05 7150600 10776 12576 10567 17378 15263 15718 17880 22904 12638 22035 TRUE FALSE FALSE 13173.08402 14046.6538 14476.17303 18327.31614 13743.36213 16540.97018 14059.79193 17286.75809 15174.33068 16542.08002 0.796337825 0.849146769 0.875112018 1.107920897 0.830812214 0.999932908 0.849940994 1.045017196 0.917316967 1 14.01385303 -5.012643017 23.76986697 0.960059994 0.832588985 0.34451222 0.080319414 340.5737696 640312.8614 0.020198993 0.037416967 9.71E-06 5.012643017 -0.127471009 YVASYLLAALGGNSS(ph)PSAK ddPTM_HeLa_A485_30min_R1 2 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 YVASYLLAALGGNS(0.007)S(0.992)PS(0.001)AK;YVASYLLAALGGNSS(0.999)PS(0.001)AK ; 348.4 1.48E-115 3583500000 1057920 1046740 902020 1315550 1521950 1249740 1739680 1849830 1029570 1733410 TRUE FALSE FALSE 1293250.654 1169147.138 1235714.734 1387415.165 1370419.314 1315174.454 1367983.156 1396156.292 1236195.255 1301302.788 0.993812252 0.898443582 0.949598161 1.066173974 1.053113331 1.01065983 1.05124124 1.072891186 0.949967422 1 20.31152526 -5.202002143 7.540489392 1.033282216 0.941784947 0.455858927 0.040696699 0.23195495 26.22219328 0.010644974 0.018489427 6.28E-06 5.202002143 -0.09149727 YVASYLLAALGGNSS(ph)PSAK ddPTM_HeLa_A486_30min_R1 2 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 YVASYLLAALGGNSS(0.999)PS(0.001)AK;YVASYLLAALGGNS(0.119)S(0.88)PS(0.001)AK ; 362.93 5.38E-117 4643000000 1266730 1230360 819032 600210 1280740 1356080 1740750 1635250 1131150 1672390 TRUE FALSE FALSE 1177938.768 1132861.793 1136183.125 1397319.213 1120097.647 1188780.637 1305195.938 1262939.272 1229198.993 1253612.659 0.939635349 0.903677691 0.9063271 1.114633937 0.893495801 0.948283849 1.041147702 1.007439789 0.980525352 1 20.25766022 YVASYLLAALGGNSSPSAK ddPTM_HeLa_A485_30min_R1 2 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ; ; 397.85 3.14E-187 851690000 970380 1112240 937930 990930 1349720 1101810 1571870 1672180 938080 1361890 FALSE FALSE TRUE 1186237.683 1242306.793 1284909.338 1045061.997 1215337.138 1159499.068 1236027.134 1262075.233 1126344.051 1022395.887 1.160252793 1.215093692 1.256763015 1.022169602 1.188714815 1.134099895 1.208951591 1.234429099 1.101671149 1 19.96352251 -8.021316554 6.291380119 1.000030381 1.175995351 0.445344187 0.061963699 0.148551447 29.11170659 0.060221144 0.015617694 9.52E-09 8.021316554 0.17596497 YVASYLLAALGGNSSPSAK ddPTM_HeLa_A486_30min_R1 2 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ; ; 472.63 1.88E-298 714320000 1143980 1168270 819560 343757 1173920 1094630 1425610 1296380 1027160 1315950 FALSE FALSE TRUE 1063792.91 1075692.03 1136915.581 800283.6685 1026676.007 959585.68 1068907.299 1001222.574 1116195.056 986427.5546 1.07842984 1.090492683 1.15255862 0.811294925 1.040802239 0.972788803 1.083614599 1.014998587 1.131552997 1 19.91185357 YVATLGVEVHPLVFHTNR ddPTM_HeLa_A485_30min_R1 2 YVATLGVEVHPLVFHTNR 18 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 331.34 1.98E-103 329910000 237000 277060 312910 261040 312890 265300 344640 363220 236340 365060 FALSE FALSE TRUE 289719.8324 309459.7569 428668.4303 275299.9542 281737.573 279190.6978 271004.8486 274139.7255 283771.2702 274057.2604 1.057150728 1.129179196 1.564156445 1.004534431 1.028024481 1.018731258 0.988862138 1.000300904 1.035445183 1 18.06411783 YVATLGVEVHPLVFHTNR ddPTM_HeLa_A486_30min_R1 2 YVATLGVEVHPLVFHTNR 18 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 268.21 2.78E-58 353100000 249171 254753 255125 103222 318810 253998 319820 284830 269360 314660 FALSE FALSE TRUE 231705.3996 234565.4445 353916.2325 240306.0326 278821.877 222662.3092 239797.6533 219980.4268 292708.3417 235867.0879 0.982355791 0.994481454 1.500490109 1.018819686 1.182114383 0.944016019 1.016664323 0.932645706 1.240988492 1 17.8476146 -6.249940992 24.49372211 1.022015851 1.141587529 0.10302239 0.159704019 1326.963635 2826681.635 0.053180505 0.052698409 5.62E-07 6.249940992 0.119571678 YVDEENS(ph)DGETSNHR ddPTM_HeLa_A485_30min_R1 4 YVDEENSDGETSNHR 15 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1;H0YH26 A0A494C108 KRI1 Protein KRI1 homolog 1 0 YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR;YVDEENS(0.952)DGET(0.036)S(0.012)NHR;YVDEENS(1)DGETSNHR ;;; 214.82 1.14E-26 7741580000 2774530 4307270 4674640 2040290 5016250 3752570 4398700 4700770 3967430 3383380 TRUE FALSE FALSE 3391714.626 4810967.758 6403983.864 2151745.876 4516814.537 3949048.763 3458881.811 3547898.787 4763656.81 2539965.632 1.335338787 1.894107423 2.521287604 0.847155508 1.778297501 1.554764644 1.361782918 1.396829446 1.875480813 1 21.27637755 -5.26252583 24.9997404 1.438941978 1.91463085 0.257971896 0.396709559 143.9810328 3313102.621 0.108030537 0.17108295 5.46E-06 5.26252583 0.475688871 YVDEENS(ph)DGETSNHR ddPTM_HeLa_A486_30min_R1 4 YVDEENSDGETSNHR 15 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1;H0YH26 A0A494C108 KRI1 Protein KRI1 homolog 1 0 YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR ;;; 259.34 1.71E-50 12834200000 8103330 8891500 8996770 382315 11108800 6622140 7405470 7531860 7945800 4803460 TRUE FALSE FALSE 7535328.413 8186905.158 12480560.29 890048.6411 9715430.719 5805167.696 5552543.079 5817019.897 8634548.342 3600642.351 2.092773366 2.273734617 3.466203824 0.247191627 2.698249304 1.612258906 1.54209792 1.615550596 2.398057763 1 21.77982287 -5.23896771 24.96090454 1.658682046 2.577186761 0.293961099 0.720294657 1081.114237 1200870.064 0.186573602 0.322844704 5.77E-06 5.23896771 0.918504715 YVELFLNSTAGASGGAYEHR ddPTM_HeLa_A485_30min_R1 2 YVELFLNSTAGASGGAYEHR 20 0 G8JLB6;P31943;H0YB39 G8JLB6 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 ; ; 150.69 7.61E-11 71004000 41821 55192 64251 35926 70847 52337 69102 67298 55553 63437 FALSE FALSE TRUE 51123.93717 61646.22429 88020.11861 37888.54641 63793.22392 55077.28439 54337.79319 50793.05998 66701.97754 47623.32337 1.07350629 1.29445448 1.848256534 0.795588038 1.339537424 1.156519127 1.140991206 1.066558492 1.400615766 1 15.53938068 -5.27727715 24.99751961 1.141793218 1.394310725 0.218240029 0.238932353 1299.387527 2050883.453 0.066053648 0.098343495 5.28E-06 5.27727715 0.252517507 YVELFLNSTAGASGGAYEHR ddPTM_HeLa_A486_30min_R1 2 YVELFLNSTAGASGGAYEHR 20 0 G8JLB6;P31943;H0YB39 G8JLB6 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 ; ; 226.45 3.26E-30 64482000 77295 81836 86288 19067.8 104712 77488 92926 85138 86357 74630 FALSE FALSE TRUE 71877.01965 75351.01732 119701.0245 44390.80203 91578.04456 67928.3184 69674.93193 65753.93595 93842.49429 55942.16224 1.284845218 1.346945029 2.139728242 0.793512447 1.637012959 1.214259794 1.245481568 1.175391392 1.677491368 1 15.7716484 -5.273186698 24.99954073 1.270899802 1.566150099 0.183081968 0.327076805 1384.782988 2946962.391 0.088816409 0.13294068 5.33E-06 5.273186698 0.295250297 YVGFGNT(ph)PPPQK ddPTM_HeLa_A485_30min_R1 2 YVGFGNTPPPQK 12 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 YVGFGNT(1)PPPQK;YVGFGNT(1)PPPQK ; 125.28 0.00020522 271430000 987260 967240 772980 871470 1020060 838410 1042760 1042180 779240 1134640 TRUE FALSE FALSE 1206872.581 1080350.304 1058937.468 919076.1994 918499.2448 882307.8512 819965.8074 786583.7209 935626.3204 851795.1295 1.416857809 1.268321767 1.243183286 1.078987385 1.078310045 1.035821667 0.962632655 0.923442379 1.098417082 1 19.70014696 -4.750198726 0.679667231 0.988825091 1.523765374 0.890612689 0.048290535 0.539584423 0.289537718 0.023094031 0.202852456 1.78E-05 4.750198726 0.534940283 YVGFGNT(ph)PPPQK ddPTM_HeLa_A486_30min_R1 4 YVGFGNTPPPQK 12 0 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 YVGFGNT(1)PPPQK;YVGFGNT(1)PPPQK;YVGFGNT(1)PPPQK;YVGFGNT(1)PPPQK ;;; 135.58 7.50E-05 618341000 2149820 2064320 1265560 596240 1834550 1892530 2007970 2022740 1520020 2135300 TRUE FALSE FALSE 1999128.72 1900735.765 1755618.725 1388076.852 1604443.633 1659048.89 1505554.668 1562206.258 1651776.557 1600606.982 1.248981632 1.187509356 1.0968456 0.867219041 1.002396998 1.036512342 0.940614833 0.976008649 1.031968857 1 20.61018768 -4.904370426 2.945795759 0.979753732 1.22465022 0.792206721 0.049003854 0.10662 1.84330076 0.01336614 0.033189832 1.25E-05 4.904370426 0.244896487 YVGFGNT(ph)PPPQKK ddPTM_HeLa_A485_30min_R1 1 YVGFGNTPPPQKK 13 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 YVGFGNT(1)PPPQKK 83.692 0.0027853 1725600000 3831500 3393600 2340900 3600900 3834800 3403400 4600300 4551700 2727200 4586600 TRUE FALSE FALSE 4683803.956 3790452 3206896.323 3797608.049 3452993.847 3581596.761 3617408.324 3435388.438 3274524.025 3443245.03 1.360287727 1.100837137 0.931358731 1.102915423 1.002831288 1.040180623 1.05058115 0.997718259 0.950999419 1 21.71533742 -4.311707187 3.141134189 1.014941526 1.393634094 0.833321059 0.047074836 0.110181418 1.741657217 0.011659933 0.095765925 4.88E-05 4.311707187 0.378692568 YVGFGNT(ph)PPPQKK ddPTM_HeLa_A486_30min_R1 2 YVGFGNTPPPQKK 13 1 Q8N6T3;Q8N6T3-2;F8VWH9;Q8N6T3-5;Q8N6T3-4;E5RHC5;F8W1U7;Q8N6T3-3;E5RHT6 Q8N6T3 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 YVGFGNT(1)PPPQKK;YVGFGNT(1)PPPQKK ; 110.77 0.00026535 3263400000 8496600 7229700 3812500 2709300 6793600 6792200 8071400 8270100 5163800 8771800 TRUE FALSE FALSE 7901032.216 6656792.242 5288802.102 6307387.32 5941483.34 5954247.422 6051850.349 6387178.765 5611402.342 6575284.185 1.201625967 1.012396127 0.804345782 0.959256991 0.9036086 0.905549822 0.920393732 0.971392047 0.853408337 1 22.64862182 -4.374735452 3.33850845 0.914383484 1.210188765 0.716921464 0.054700347 0.127148015 2.290942891 0.013000947 0.079353505 4.22E-05 4.374735452 0.29580528 YVGLS(ph)PR ddPTM_HeLa_A485_30min_R1 1 YVGLSPR 7 0 A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 YVGLS(1)PR 75.696 0.016349 144920000 176340 201120 202590 163210 259970 176120 177610 212530 165100 183440 TRUE FALSE FALSE 215566.2246 224639.2345 277536.4715 172125.749 234086.474 185341.3709 139662.1726 160406.6843 198234.0556 137711.784 1.565343346 1.631227394 2.015342939 1.249898477 1.699828927 1.345864279 1.01416283 1.164799988 1.43948506 1 17.07129249 -6.444373105 3.842323056 1.16766228 1.631051017 0.541630685 0.207459865 0.191835726 5.353270306 0.07758303 0.065886851 3.59E-07 6.444373105 0.463388738 YVGLS(ph)PR ddPTM_HeLa_A486_30min_R1 1 YVGLSPR 7 0 A0A1B0GVN4;Q5VW30;A0A2R8Y7V8;Q5VW26;O00712-5;O00712-6 A0A1B0GVN4 NFIB Nuclear factor 1;Nuclear factor 1 B-type 1 0 YVGLS(1)PR 95.909 0.0054807 86001000 210960 219350 169400 72103 234570 179970 199130 191650 160740 177220 TRUE FALSE FALSE 196172.7934 201967.9071 234996.2167 167859.4279 205148.0433 157767.1312 149305.5678 148015.4787 174673.0726 132842.9585 1.476727074 1.520350867 1.768977591 1.263592966 1.544289932 1.187621331 1.123925344 1.114213959 1.31488394 1 17.01936223 -6.184892052 1.372963097 1.135263183 1.548487901 0.6302158 0.138561559 0.274990964 1.050312971 0.061445721 0.059120213 6.53E-07 6.184892052 0.413224717 YVIESSSHT(ph)PELAR ddPTM_HeLa_A485_30min_R1 5 YVIESSSHTPELAR 14 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 YVIESSSHT(0.999)PELAR;YVIESSS(0.003)HT(0.997)PELAR;YVIESSSHT(1)PELAR;YVIESSS(0.001)HT(0.998)PELAR;YVIESSSHT(1)PELAR ;;;; 219.85 1.41E-27 1349930000 548578 900398 898260 400719 1192274 710135 819266 998046 740748 661953 TRUE FALSE FALSE 670607.2835 1005691.714 1230563.754 422609.2643 1073567.014 747316.5705 644223.1263 753273.6536 889409.3291 496940.2994 1.349472531 2.023767674 2.476280863 0.850422606 2.160354102 1.503835715 1.296379318 1.515823238 1.789770985 1 18.92271302 -11.27310407 0.142523619 1.65E-08 1.979420074 0.172495275 0.444763165 91.3791138 1.712621381 33.32806679 3.100061336 5.33E-12 11.27310407 1.979420057 YVIESSSHT(ph)PELAR ddPTM_HeLa_A486_30min_R1 4 YVIESSSHTPELAR 14 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 YVIESSSHT(1)PELAR;YVIESSSHT(1)PELAR;YVIESSSHT(1)PELAR;YVIESS(0.001)S(0.011)HT(0.988)PELAR ;;; 216.19 1.77E-27 1006980000 438295 463366 486557 81915.6 624256 388638 454068 440045 405655 287303 TRUE FALSE FALSE 407572.7839 426647.1906 674964.9008 190703.6566 545955.9915 340691.7949 340455.3838 339856.3596 440817.502 215360.4588 1.892514467 1.981084146 3.13411712 0.885509149 2.535079999 1.58196076 1.580863013 1.578081518 2.046882257 1 17.71639386 -9.9199109 0.130316078 8.70E-13 2.517011202 0.217342681 0.562237566 50.85864956 1.409225148 24.08813244 5.909906568 1.20E-10 9.9199109 2.517011202 YVIS(ph)DEEEEDDD ddPTM_HeLa_A485_30min_R1 2 YVISDEEEEDDD 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD ; 196.11 4.11E-14 753860000 475450 641200 676890 496070 814520 680290 762300 904160 643250 699590 TRUE FALSE FALSE 581212.2122 716182.7623 927299.7787 523169.048 733423.5288 715908.9325 599428.3776 682413.3423 772344.3748 525195.088 1.10665965 1.363650915 1.765629192 0.99614231 1.396478272 1.363129528 1.141344219 1.299352103 1.470585678 1 19.0024939 -10.36898112 4.017846074 0.999054506 1.324548298 0.184544652 0.203370415 138452806.5 1666.089456 1211858.808 0.048256962 4.28E-11 10.36898112 0.325493792 YVIS(ph)DEEEEDDD ddPTM_HeLa_A486_30min_R1 3 YVISDEEEEDDD 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 0 YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD ;; 211.84 2.83E-22 900280000 958220 1080180 926150 350136 1232740 966790 1075400 1099880 885220 1078430 TRUE FALSE FALSE 891053.7263 994582.6029 1284780.083 815134.3029 1078118.254 847517.2794 806323.5456 849461.3342 961951.5823 808384.1086 1.102265268 1.230334184 1.589318827 1.008350231 1.333670767 1.048409129 0.99745101 1.050813994 1.189968447 1 19.62468144 -6.274427221 23.94293785 1.056762021 1.256656724 0.295641824 0.15078786 582.6150851 1074040.098 0.05273439 0.046819908 5.32E-07 6.274427221 0.199894703 YVIYIER ddPTM_HeLa_A486_30min_R1 1 YVIYIER 7 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 0 119.89 0.010572 36721000 20801 21580 19599 7009.5 25699 19553 23400 21767 19481 22405 FALSE FALSE TRUE 19342.95732 19869.92221 27188.25768 16318.47024 22475.59179 17140.74966 17545.0725 16811.12927 21169.62877 16794.64217 1.151733816 1.183110781 1.618864958 0.971647391 1.33825964 1.020608209 1.044682722 1.000981688 1.260498947 1 14.03571344 -6.086375349 1.570732341 1.065586896 1.269429499 0.196582754 0.172906446 0.624974436 3.107820431 0.069652357 0.072352652 8.20E-07 6.086375349 0.203842602 YVLGQLVGLNS(ph)PNSILK ddPTM_HeLa_A485_30min_R1 2 YVLGQLVGLNSPNSILK 17 0 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 YVLGQLVGLNS(1)PNSILK;YVLGQLVGLNS(1)PNSILK ; 252.79 2.45E-51 491060000 587790 582010 495310 656060 798810 617990 810760 764710 550950 908530 TRUE FALSE FALSE 718541.8576 650071.0067 678545.7806 691898.8966 719277.6716 650347.0008 637534.5027 577163.6735 661520.6114 682050.1913 1.053502905 0.953113151 0.994861946 1.014439854 1.054581731 0.953517804 0.934732533 0.846218769 0.969900192 1 19.37951838 -6.473509548 5.037537579 0.926881935 1.009696895 0.380336357 0.046022999 0.204206347 11.66919638 0.016638944 0.014194343 3.36E-07 6.473509548 0.08281496 YVLGQLVGLNS(ph)PNSILK ddPTM_HeLa_A486_30min_R1 2 YVLGQLVGLNSPNSILK 17 0 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 YVLGQLVGLNS(1)PNSILK;YVLGQLVGLNS(1)PNSILK ; 318.09 2.68E-79 543910000 788770 831420 520050 328110 847660 822970 989080 967750 660870 1027720 TRUE FALSE FALSE 733481.2962 765535.2512 721427.2874 763856.6618 741338.5787 721440.3287 741601.7226 747414.4508 718154.7437 770372.2227 0.952112855 0.993721254 0.936465862 0.991542321 0.962312187 0.93648279 0.962653768 0.970199118 0.932217859 1 19.55519616 -5.993760691 24.9804589 0.957572691 0.969098029 0.019630078 0.023529505 537.1006657 2150390.514 0.006854099 0.007751738 1.01E-06 5.993760691 0.011525338 YVLLSIR ddPTM_HeLa_A485_30min_R1 1 YVLLSIR 7 0 A0A499FJL1;P48147 A0A499FJL1 PREP Prolyl endopeptidase 0 0 151.17 0.0029857 19129000 22336 30338 36274 22140 35183 23503 30567 30586 22702 30078 FALSE FALSE TRUE 27304.56614 33885.76519 49693.26209 23349.45214 31680.05698 24733.58074 24036.11074 23084.73554 27258.08316 22580.10814 1.209230973 1.500691005 2.200753945 1.034071759 1.403007319 1.09537034 1.064481648 1.022348316 1.207172392 1 14.46276478 -5.337687262 24.99997501 1.127689523 1.623307248 0.467206494 0.253626422 108.8043412 35673.84048 0.072055064 0.106874944 4.60E-06 5.337687262 0.495617725 YVLLSIR ddPTM_HeLa_A486_30min_R1 1 YVLLSIR 7 0 A0A499FJL1;P48147 A0A499FJL1 PREP Prolyl endopeptidase 0 0 124.37 0.0089251 18339000 15508 15590 15735 6016.1 19472 13048 16797 17694 16582 14282 FALSE FALSE TRUE 14420.96928 14354.59162 21828.0134 14005.78484 17029.64019 11438.27042 12594.21294 13665.46246 18019.34111 10705.69424 1.347037283 1.340837063 2.038916198 1.308255637 1.590708628 1.068428648 1.176403198 1.276466724 1.683154843 1 13.38609073 -6.243911264 24.38659372 1.254139374 1.531404091 0.230485941 0.259009412 976.354402 1358386.768 0.086050797 0.085843811 5.70E-07 6.243911264 0.277264717 YVQFLSGLLSGSVK ddPTM_HeLa_A485_30min_R1 2 YVQFLSGLLSGSVK 14 0 Q68CZ2;E9PCX8;Q68CZ2-2;C9JHU5;Q68CZ2-3;Q68CZ2-4 Q68CZ2 TNS3 Tensin-3 0 0 ; ; 248.77 3.63E-32 15935300 32787 33761 28567 34863 44729 31428 44472 41368 26351 49203 FALSE FALSE TRUE 40080.35504 37709.05527 39135.12207 36767.47741 40275.62371 33073.52148 34970.1939 31222.43314 31639.40399 36937.59761 1.085082886 1.020885431 1.059492891 0.995394389 1.090369334 0.895389078 0.946737096 0.845275144 0.856563665 1 15.17280242 -6.270887192 24.86850717 0.90149419 1.046080417 0.675744968 0.048819443 361.9054822 952604.0445 0.016567915 0.014796979 5.36E-07 6.270887192 0.144586227 YVQFLSGLLSGSVK ddPTM_HeLa_A486_30min_R1 2 YVQFLSGLLSGSVK 14 0 Q68CZ2;E9PCX8;Q68CZ2-2;C9JHU5;Q68CZ2-3;Q68CZ2-4 Q68CZ2 TNS3 Tensin-3 0 0 ; ; 174.05 4.12E-08 20381100 32462 35131 25498.8 12289.1 33319 33237 41719 38167 30931 37323 FALSE FALSE TRUE 30186.58143 32347.09162 35372.61824 28609.64586 29139.82033 29136.55687 31280.46494 29477.20728 33612.12398 27977.07787 1.078975495 1.156199792 1.264342846 1.022610224 1.04156054 1.041443892 1.118074771 1.053619946 1.201416536 1 14.77195766 -5.282284251 24.99677528 1.070453204 1.165475442 0.305079206 0.067804535 997.9393475 1196708.057 0.019091678 0.028350735 5.22E-06 5.282284251 0.095022238 YVSLHVR ddPTM_HeLa_A485_30min_R1 1 YVSLHVR 7 0 P41227-2;P41227;C9JN83;C9JW55;F8W808;A8MWP7;Q9BSU3 P41227-2 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 0 0 117.93 0.0028156 20907000 7403.3 14642 16239 2432.7 17255 11231 11708 12952 11265 8243.5 FALSE FALSE TRUE 9050.138544 16354.25453 22246.48186 2565.592241 15537.03161 11819.03779 9206.490154 9775.501692 13525.78217 6188.54716 1.46240116 2.642664604 3.594782634 0.414571009 2.510610522 1.909824307 1.487665831 1.579611731 2.185615108 1 12.59538504 -9.042856265 0.11759641 1.32E-12 2.871927511 0.130287353 0.799769452 49.77095316 1.881230995 31.18384263 13.66447466 9.06E-10 9.042856265 2.871927511 YVVACK(ac)EPK ddPTM_HeLa_A485_30min_R1 1 YVVACKEPK 9 1 Q96ES7;H3BN84 Q96ES7 CCDC101 SAGA-associated factor 29 homolog 0 1 YVVACK(1)EPK 148.52 0.00073431 34294000 22788 21742 18868 29444 32294 29373 34262 40195 20621 40909 FALSE TRUE FALSE 27857.11198 24284.53777 25848.05836 31052.45116 29078.69597 30910.92486 26941.64381 30337.11323 24759.44555 30711.13917 0.907068664 0.790740377 0.841650914 1.011113622 0.946845241 1.006505317 0.87725967 0.987821163 0.806204075 1 14.90647441 -5.234618521 23.10136954 0.94690327 0.840911942 0.329951612 0.066113428 316.0257936 272197.8313 0.017084791 0.029575249 5.83E-06 5.234618521 -0.105991328 YVVGLIIK ddPTM_HeLa_A485_30min_R1 1 YVVGLIIK 8 0 O14980;C9JKM9;C9J673 O14980 XPO1 Exportin-1 0 0 132.94 0.0021148 12329000 17204 19971 16780 19794 25441 17973 22430 23313 14240 29139 FALSE FALSE TRUE 21030.97045 22306.43473 22987.62027 20875.2961 22908.00471 18914.03849 17637.64726 17595.4502 17097.83738 21875.18356 0.961407724 1.019714173 1.050853823 0.954291242 1.047214285 0.864634504 0.80628568 0.804356688 0.781608864 1 14.4170075 -6.364214741 4.783276375 0.832539767 1.006653414 0.591145371 0.064019942 0.142809368 5.234534406 0.021849482 0.019158166 4.32E-07 6.364214741 0.174113647 YVVGLIIK ddPTM_HeLa_A486_30min_R1 1 YVVGLIIK 8 0 O14980;C9JKM9;C9J673 O14980 XPO1 Exportin-1 0 0 163.41 0.00019038 19833000 40731 40396 28848 14093 38381 35776 42685 38561 28765 42502 FALSE FALSE TRUE 37875.96724 37194.87384 40018.71818 32809.21622 33566.89709 31362.32086 32004.76152 29781.50208 31258.37336 31859.22256 1.188854096 1.167475878 1.256110946 1.029818482 1.053600634 0.984403207 1.004568189 0.934784332 0.981140494 1 14.95942344 -5.384089023 4.226888553 0.993536958 1.199878507 0.878943781 0.035113687 0.078574424 2.326197097 0.010885354 0.016541599 4.13E-06 5.384089023 0.206341548 YVWLVYEQDRPLK ddPTM_HeLa_A485_30min_R1 1 YVWLVYEQDRPLK 13 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 158.2 1.38E-06 38010000 40043 36653 38180 52022 48731 40812 47602 43327 45073 70012 FALSE FALSE TRUE 48950.4272 40939.24951 52304.3708 54863.83013 43879.17054 42948.85321 37431.44383 32700.98532 54118.73767 52559.29688 0.931337177 0.778915472 0.995149743 1.043846349 0.83485079 0.817150452 0.712175506 0.622173188 1.029670123 1 15.68165836 -5.977346233 23.95672669 0.807214292 0.931281873 0.106575336 0.130380069 268.7233091 284176.6686 0.04060422 0.04603703 1.05E-06 5.977346233 0.124067581 YVWLVYEQDRPLK ddPTM_HeLa_A486_30min_R1 2 YVWLVYEQDRPLK 13 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 ; ; 173.19 1.34E-07 108393000 151694 193064 130928 59118 186441 199453 195587 195796 182365 211307 FALSE FALSE TRUE 141061.0339 177764.9055 181626.828 137629.6917 163055.8313 174846.5167 146649.0639 151217.525 198172.545 158394.3518 0.890568586 1.12229321 1.146674903 0.868905299 1.029429581 1.103868381 0.925847811 0.954690134 1.251133912 1 17.27316137 -7.737069787 24.99574252 1.125567377 1.0107951 0.164438139 0.107884268 365.3652602 374754.9171 0.071689216 0.027068211 1.83E-08 7.737069787 -0.114772277 YVWLVYEQDRPLKCDEPILSNR ddPTM_HeLa_A485_30min_R1 1 YVWLVYEQDRPLKCDEPILSNR 22 2 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 109.03 3.10E-06 26410000 12548 11851 12349 13091 21579 14462 19366 19087 12278 20584 FALSE FALSE TRUE 15339.25931 13236.87136 16917.40898 13806.12818 19430.51899 15219.20796 15228.29589 14405.88332 14742.08198 15452.78762 0.992653215 0.856600873 1.094780398 0.893439328 1.257411897 0.984884303 0.985472412 0.932251428 0.954007933 1 13.9155795 -10.27620118 13.30425717 1.000000031 0.99586433 0.000105179 0.106824217 0 0 0.102081645 0.024758436 5.29E-11 10.27620118 -0.004135701 YVWLVYEQDRPLKCDEPILSNR ddPTM_HeLa_A486_30min_R1 1 YVWLVYEQDRPLKCDEPILSNR 22 2 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 210.38 1.17E-29 25916000 11637 15373 12937 7351.2 19852 13463 20260 18088 11575 20191 FALSE FALSE TRUE 10821.30639 14154.78749 17946.55286 17113.96511 17361.97705 11802.07194 15190.73371 13969.75726 12578.33032 15135.04218 0.714983564 0.935232775 1.185761668 1.130751068 1.147137672 0.779784543 1.003679642 0.923007488 0.831073358 1 13.88560508 -6.257295754 24.99948073 0.908707641 1.032963647 0.142430664 0.140290665 764.2151779 4610695.789 0.050245104 0.04851428 5.53E-07 6.257295754 0.124256007 YWGPAS(ph)PTHK ddPTM_HeLa_A485_30min_R1 2 YWGPASPTHK 10 0 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 YWGPAS(0.998)PT(0.002)HK;YWGPAS(0.801)PT(0.199)HK ; 120.87 0.00016657 670410000 566970 426400 377870 702970 606690 425440 553980 483640 466750 926150 TRUE FALSE FALSE 693090.5205 476263.7708 517659.8375 741371.4711 546285.8134 447715.3805 435617.6474 365026.5317 560422.4437 695277.8495 0.996854022 0.684997762 0.744536645 1.066295254 0.78570864 0.643937357 0.626537503 0.525008142 0.806040986 1 19.4072301 -6.004758458 24.94667314 0.688097962 0.859974325 0.156197571 0.157727173 326.4656619 1711541.07 0.048864769 0.053994889 9.89E-07 6.004758458 0.171876364 YWGPAS(ph)PTHK ddPTM_HeLa_A486_30min_R1 2 YWGPASPTHK 10 0 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 YWGPAS(0.979)PT(0.021)HK;YWGPAS(0.955)PT(0.045)HK ; 132.69 4.74E-05 1458950000 939640 1057460 610520 364260 900190 1163710 1177470 1150170 967570 1182290 TRUE FALSE FALSE 873776.0883 973663.0184 846929.6943 848015.6887 787279.7763 1020143.292 882854.552 888301.399 1051439.747 886236.8886 0.985939651 1.098648715 0.955647079 0.956872479 0.888340111 1.151095497 0.996183485 1.002329524 1.186409368 1 19.75733285 -6.263578075 24.99961759 1.06291041 0.981528468 0.254829718 0.076685919 324.1797472 3789395.52 0.026803422 0.024767201 5.45E-07 6.263578075 -0.081381942 YWGPAS(ph)PTHKLPPSFPGNKDELMQHMDEVNDELIR ddPTM_HeLa_A485_30min_R1 1 YWGPASPTHKLPPSFPGNKDELMQHMDEVNDELIR 35 2 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 Y(0.026)WGPAS(0.776)PT(0.199)HKLPPSFPGNKDELMQHMDEVNDELIR 55.767 0.0090239 198520000 63743 72506 55131 65800 74785 94625 114120 108920 46882 100550 TRUE FALSE FALSE 77922.41044 80984.94598 75526.25109 69394.48739 67339.14281 99579.41868 89737.32973 82207.19922 56290.78737 75484.73549 1.032293615 1.072865202 1.000549987 0.91931815 0.892089538 1.319199412 1.188814257 1.08905726 0.745724112 1 16.20389731 -7.740559913 24.85860106 0.872861984 1.064513329 0.257246525 0.130098836 283.3978123 337409.1257 0.094602326 0.03567094 1.82E-08 7.740559913 0.191651345 YWGPAS(ph)PTHKLPPSFPGNKDELMQHMDEVNDELIR ddPTM_HeLa_A486_30min_R1 1 YWGPASPTHKLPPSFPGNKDELMQHMDEVNDELIR 35 2 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 YWGPAS(0.893)PT(0.107)HKLPPSFPGNKDELMQHMDEVNDELIR 108.52 3.43E-05 247420000 112110 104820 60527 65781 113290 105150 143590 155400 90564 152660 TRUE FALSE FALSE 104251.6679 96513.68145 83964.67537 153141.4924 99080.11181 92177.66209 107662.2633 120018.8124 98414.16044 114432.9424 0.911028466 0.843408196 0.733745665 1.338264046 0.86583557 0.80551684 0.94083278 1.048813479 0.860015992 1 16.8041429 YWLCAATGPSIK ddPTM_HeLa_A486_30min_R1 1 YWLCAATGPSIK 12 0 D6RF23;H0Y8R5;H0YAF8;D6RAC2;J3KPE3;P63244;H0YAM7;H0Y8W2;D6REE5;H0Y9P0 D6RF23 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 174.41 3.80E-09 0 17071 18889 18273 7793.7 24803 26697 24987 24700 21855 25824 FALSE FALSE TRUE 15874.41105 17392.16685 25348.79497 18144.12747 21691.97646 23403.39558 18734.98831 19076.3492 23749.409 19357.50231 0.820065048 0.89847164 1.309507526 0.937317593 1.120597901 1.209009055 0.967841202 0.985475754 1.226883955 1 14.24060519 -4.543520678 24.83642288 1.089937377 0.839666587 0.394796087 0.118181642 174.8706047 210404.2513 0.028907692 0.07650002 2.86E-05 4.543520678 -0.25027079 YWLYYLHPVLQR ddPTM_HeLa_A486_30min_R1 2 YWLYYLHPVLQR 12 0 Q86XA6;P15291-2;P15291 Q86XA6 B4GALT1 "Beta-1,4-galactosyltransferase 1;Lactose synthase A protein;N-acetyllactosamine synthase;Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase;Beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase;Processed beta-1,4-galactosyltransferase 1" 0 0 ; ; 148.32 7.88E-05 163153000 56306 81777 92972 22229.1 111442 83798 100814 89485 108356 104310 FALSE FALSE TRUE 52359.24016 75296.69269 128973.2483 51750.4682 97463.9052 73459.85476 75589.2709 69111.21894 117748.3853 78190.09706 0.669640301 0.962995258 1.649483159 0.661854508 1.246499351 0.939503307 0.966737141 0.88388711 1.505924532 1 16.25469828 -4.347635632 4.417732117 1.09247425 0.668472173 0.178431007 0.280543086 0.334397412 10.65392318 0.067099979 0.330675737 4.49E-05 4.347635632 -0.424002078 YWNYSHS(ph)APQDDLMLIK ddPTM_HeLa_A486_30min_R1 1 YWNYSHSAPQDDLMLIK 17 0 A4D1T9 A4D1T9 PRSS37 Probable inactive serine protease 37 1 0 Y(0.009)WNY(0.009)S(0.454)HS(0.528)APQDDLMLIK 46.027 0.033199 40236000 49366 48335 33954 22086 52736 50172 56900 62737 40966 69695 TRUE FALSE FALSE 45905.69833 44504.75857 47101.89812 51417.32416 46121.35914 43982.28875 42663.01817 48453.15464 44516.96586 52242.91836 0.878697052 0.851881173 0.901593931 0.984197012 0.882825091 0.841880395 0.816627775 0.927458805 0.852114837 1 15.67294787 -10.20647545 4.91053857 1.000014858 0.882890953 0.378420603 0.045385081 7.85E-06 1.27E-06 0.046736644 0.011333864 6.22E-11 10.20647545 -0.117123905 YWPQEAGEYAVHVLCNS(ph)EDIR ddPTM_HeLa_A485_30min_R1 1 YWPQEAGEYAVHVLCNSEDIR 21 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 YWPQEAGEYAVHVLCNS(1)EDIR 171.22 6.03E-14 39017000 28489 34458 36844 29300 50839 35007 38587 44773 32538 42822 TRUE FALSE FALSE 34826.27976 38487.56336 50474.12881 30900.58481 45777.29065 36839.91239 30342.57222 33792.35155 39068.07814 32147.26348 1.083335749 1.197226737 1.570090992 0.961219758 1.423987167 1.145973511 0.943861746 1.051173503 1.215284721 1 14.97240831 -6.520463834 24.91448424 1.055140594 1.250303973 0.22649422 0.169640856 141.3799609 1458641.465 0.062249956 0.049061109 3.02E-07 6.520463834 0.195163378 YWPQEAGEYAVHVLCNS(ph)EDIR ddPTM_HeLa_A486_30min_R1 2 YWPQEAGEYAVHVLCNSEDIR 21 0 Q60FE5;P21333-2;P21333;A0A087WWY3 Q60FE5 FLNA Filamin-A 1 0 YWPQEAGEYAVHVLCNS(1)EDIR;YWPQEAGEYAVHVLCNS(1)EDIR ; 191.22 1.14E-19 44266000 22913.1 29098.7 24798.4 9631.3 35496.6 29397 32025.4 29703.9 23932.3 26693.2 TRUE FALSE FALSE 21307.01001 26792.81304 34401.0046 22422.15314 31044.28544 25770.29703 24012.30619 22940.9704 26006.77103 20009.04898 1.064868702 1.339034807 1.719272347 1.120600643 1.551512292 1.287932128 1.200072338 1.146529774 1.299750481 1 14.28836498 -6.665348725 3.487277455 1.171552615 1.368668262 0.191630226 0.189539052 0.415758273 9.884314685 0.077290683 0.057014751 2.16E-07 6.665348725 0.197115647 YYDDIYFDS(ph)DS(ph)EDEDR ddPTM_HeLa_A485_30min_R1 2 YYDDIYFDSDSEDEDR 16 0 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 2 0 YYDDIYFDS(1)DS(1)EDEDR;YYDDIYFDS(1)DS(1)EDEDR ; 329.21 3.03E-90 592390000 843250 1219040 1013690 838090 908880 862410 963490 942240 825830 976300 TRUE FALSE FALSE 1030828.053 1361596.124 1388696.114 883872.7345 818388.7159 907564.4541 757632.4905 711154.1626 991566.506 732926.3775 1.406455116 1.857752928 1.894727979 1.205950231 1.116604261 1.23827506 1.033708861 0.970294131 1.352886915 1 19.48330876 -5.344710207 5.457590412 1.123993014 1.731677623 0.734373688 0.162510243 0.106760345 5.301079286 0.045743243 0.068846881 4.52E-06 5.344710207 0.607684609 YYDDIYFDS(ph)DS(ph)EDEDR ddPTM_HeLa_A486_30min_R1 2 YYDDIYFDSDSEDEDR 16 0 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 2 0 YYDDIYFDS(1)DS(1)EDEDR;YYDDIYFDS(1)DS(1)EDEDR ; 314.17 6.38E-78 562050000 839140 907870 651690 266998 738530 749820 732130 712530 735230 864670 TRUE FALSE FALSE 780320.6193 835927.0748 904041.8209 621584.8373 645896.6809 657314.832 548943.3303 550302.4734 798960.3284 648151.0039 1.203917937 1.289710376 1.394801235 0.959012381 0.996521917 1.014138415 0.846937407 0.849034361 1.232676218 1 19.30597044 -5.2706902 24.96504677 0.975066412 1.295499902 0.627605899 0.109458601 388.4953466 1048425.801 0.030854242 0.046474399 5.36E-06 5.2706902 0.32043349 YYDDIYFDS(ph)DS(ph)EDEDRAVQVTK ddPTM_HeLa_A485_30min_R1 2 YYDDIYFDSDSEDEDRAVQVTK 22 1 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 2 0 YYDDIYFDS(1)DS(1)EDEDRAVQVTK;YYDDIYFDS(1)DS(1)EDEDRAVQVTK ; 145.52 2.05E-09 101100000 102382 115352 110488 137442 194447 151032 191809 215129 133622 189612 TRUE FALSE FALSE 125156.5227 128841.413 151362.109 144950.1084 175087.1739 158939.802 150827.4402 162368.2754 160438.7097 142345.218 0.879246416 0.905133413 1.063345233 1.01829981 1.230017955 1.116579849 1.059589092 1.140665474 1.127109938 1 17.1190345 -4.808580563 1.536117341 1.112213514 0.859434474 0.631074744 0.062169097 0.289497337 1.196121124 0.018247813 0.082053925 1.55E-05 4.808580563 -0.25277904 YYDDIYFDS(ph)DS(ph)EDEDRAVQVTK ddPTM_HeLa_A486_30min_R1 1 YYDDIYFDSDSEDEDRAVQVTK 22 1 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 2 0 YYDDIYFDS(1)DS(1)EDEDRAVQVTK 181.64 2.12E-19 250170000 390750 406700 311700 207690 583820 418950 578450 599890 402820 495020 TRUE FALSE FALSE 363360.4428 374471.6108 432398.5876 483512.8161 510591.8517 367264.2086 433715.6918 463308.1425 437736.7619 371063.77 0.979239883 1.009183976 1.165294547 1.30304507 1.376021841 0.989760355 1.168844083 1.248594393 1.179680684 1 18.50130762 -4.767502234 4.140901997 1.193775428 0.987246618 0.295731874 0.113283296 0.230736259 8.986121905 0.030342256 0.077874362 1.71E-05 4.767502234 -0.20652881 YYGGAGGS(ph)PGK ddPTM_HeLa_A485_30min_R1 1 YYGGAGGSPGK 11 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 YYGGAGGS(1)PGK 78.903 0.0045649 0 191560 264890 225320 246370 355770 214310 297030 294150 179330 356540 TRUE FALSE FALSE 234171.8611 295866.5813 308675.2443 259828.5693 320348.2896 225530.9402 233567.114 222009.2513 215319.8861 267661.1396 0.874881806 1.105377425 1.153231451 0.970736991 1.196842732 0.842598745 0.87262243 0.829441478 0.80444956 1 18.03004817 -6.284445604 24.7621019 0.859337508 1.062919841 0.484233534 0.097928157 569.325131 612774.8399 0.033172186 0.029274496 5.19E-07 6.284445604 0.203582333 YYGGGS(ph)EGGRAPK ddPTM_HeLa_A485_30min_R1 4 YYGGGSEGGRAPK 13 1 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 0 YYGGGS(1)EGGRAPK;YYGGGS(1)EGGRAPK;YYGGGS(1)EGGRAPK;YYGGGS(1)EGGRAPK ;;; 110.35 0.00015351 1001020000 685460 860450 660322 795319 1113250 978820 1379560 1599290 748537 1112270 TRUE FALSE FALSE 837938.2122 961072.1426 904602.5861 838765.2631 1002410.921 1030069.502 1084805.736 1207061.62 898761.5099 835001.5588 1.003516944 1.150982453 1.083354368 1.004507422 1.20048988 1.233613867 1.299166121 1.44558008 1.07635908 1 19.67141937 -5.904381295 5.302583011 1.241595465 1.069387292 0.246601584 0.120942775 0.255492052 11.42095723 0.037011946 0.042184867 1.25E-06 5.904381295 -0.172208173 YYGGGS(ph)EGGRAPK ddPTM_HeLa_A486_30min_R1 2 YYGGGSEGGRAPK 13 1 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 0 YYGGGS(1)EGGRAPK;YYGGGS(1)EGGRAPK ; 100.45 0.00037454 416230000 489420 426100 282340 216084 543150 461710 615750 640260 332000 621800 TRUE FALSE FALSE 455114.1854 392334.2842 391669.6093 503054.4723 475023.0623 404748.9145 461682.8373 494486.7748 360778.0273 466097.2328 0.976436145 0.841743432 0.840317388 1.079290837 1.019150145 0.868378712 0.990529024 1.060909055 0.774040269 1 18.83027142 -5.228450531 24.99921391 0.971494253 0.881723432 0.14840188 0.092176656 1197.202417 907248.0412 0.024617529 0.042635148 5.91E-06 5.228450531 -0.08977082 YYGGGSEGGR ddPTM_HeLa_A485_30min_R1 1 YYGGGSEGGR 10 0 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 103.74 0.013222 9428400 6462.2 8605.3 11096 4938.3 14778 8067 8815.2 8611.1 9770.6 10284 FALSE FALSE TRUE 7899.694096 9611.614979 15200.87214 5208.066825 13306.65043 8489.375646 6931.760506 6499.214223 11731.4698 7720.388063 1.023225003 1.244965266 1.968925917 0.674586145 1.723572743 1.099604784 0.897851306 0.841824811 1.519544057 1 12.91445765 -6.497299986 24.2188602 1.044067142 1.33087402 0.104824363 0.37207066 1096.323419 1038039.354 0.127094838 0.111595707 3.18E-07 6.497299986 0.286806878 YYHSPTNTVHMYPPEMAPSSAPPS(ph)TPPTHK ddPTM_HeLa_A485_30min_R1 2 YYHSPTNTVHMYPPEMAPSSAPPSTPPTHK 30 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 YYHSPTNTVHMYPPEMAPSSAPPS(0.383)T(0.383)PPT(0.233)HK;YYHSPTNTVHMYPPEMAPSSAPPS(0.426)T(0.426)PPT(0.148)HK ; 104.83 6.70E-05 1078460000 499150 660340 536480 469470 807630 683810 872670 966570 598130 725630 TRUE FALSE FALSE 610184.1955 737561.0188 734946.2768 495115.9573 727219.5214 719613.2342 686216.9254 729517.192 718169.2046 544743.7952 1.120130602 1.353959467 1.349159519 0.908896919 1.334975318 1.321012264 1.259705813 1.33919321 1.318361422 1 19.05521833 YYHSPTNTVHMYPPEMAPSSAPPS(ph)TPPTHK ddPTM_HeLa_A486_30min_R1 1 YYHSPTNTVHMYPPEMAPSSAPPSTPPTHK 30 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 YYHSPTNTVHMYPPEMAPS(0.001)S(0.002)APPS(0.448)T(0.448)PPT(0.102)HK 49.101 0.012386 303610000 89308 81649 66476 18405 99434 84168 93689 96260 82293 84496 TRUE FALSE FALSE 83047.97039 75178.83588 92217.28749 42847.77014 86962.06053 73784.20792 70247.02126 74343.69934 89426.2235 63337.65162 1.311194341 1.18695332 1.455963161 0.676497613 1.372991551 1.16493438 1.109087872 1.173767853 1.411896735 1 15.95077576 YYHSPTNTVHMYPPEMAPSSAPPST(ph)PPTHK ddPTM_HeLa_A486_30min_R1 1 YYHSPTNTVHMYPPEMAPSSAPPSTPPTHK 30 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 YYHSPTNTVHMYPPEMAPS(0.002)S(0.001)APPS(0.448)T(0.549)PPTHK 165.61 5.98E-14 286690000 106230 93890 59846 16848 106490 88208 104920 99733 82227 90752 TRUE FALSE FALSE 98783.82557 86449.81446 83019.97393 39222.99545 93133.03122 77325.79379 78667.90627 77025.97306 89354.50257 68027.1085 1.452124421 1.270814185 1.220395453 0.576578901 1.369057619 1.136690879 1.156419963 1.132283508 1.313513165 1 16.05382215 -4.581643705 2.469530469 1.109190047 1.435126469 0.218718854 0.204592508 0.503157762 5.576328042 0.054925926 0.257443453 2.62E-05 4.581643705 0.325936422 YYHSPTNTVHMYPPEMAPSSAPPSTPPT(ph)HK ddPTM_HeLa_A486_30min_R1 1 YYHSPTNTVHMYPPEMAPSSAPPSTPPTHK 30 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 YYHSPTNTVHMYPPEMAPSS(0.001)APPS(0.307)T(0.307)PPT(0.384)HK 85 0.00036701 423780000 244550 226600 186620 38163 256290 222230 276000 256350 198310 212880 TRUE FALSE FALSE 227408.3079 208643.3907 258884.2619 88845.39265 224143.7184 194813.5221 206941.8808 197984.7011 215499.6705 159573.4624 1.425101044 1.307506822 1.622351599 0.55676797 1.404642821 1.220839099 1.296843959 1.240711946 1.350473113 1 17.28386122 YYK(ac)ERLLYLEEGQK ddPTM_HeLa_A485_30min_R1 1 YYKERLLYLEEGQK 14 2 C9J586;E7EU49;E9PG37;Q9NR81-4;Q9NR81;Q9NR81-3;Q9NR81-2 C9J586 ARHGEF3 Rho guanine nucleotide exchange factor 3 0 1 YYK(1)ERLLYLEEGQK 64.439 0.034174 6279300 11158 11001 9401.9 6274.6 23133 4253.4 22387 11362 7959.2 37750 FALSE TRUE FALSE 13640.05861 12287.47125 12880.05406 6617.36551 20829.7973 4476.101447 17603.83457 8575.451685 9556.538434 28339.61974 0.481307044 0.433579256 0.454489304 0.233502269 0.735006238 0.157945007 0.621173986 0.302595863 0.337214773 1 14.79053278 -10.61525184 2.944346357 1.042860482 0.417903915 0.531852864 0.163971356 100159821.5 103626392 33045842.52 0.039139707 2.43E-11 10.61525184 -0.624956567 YYLHDDR ddPTM_HeLa_A485_30min_R1 1 YYLHDDR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 91.065 0.022867 344840000 116700 184500 174490 114730 177210 155640 164140 185930 142410 150360 FALSE FALSE TRUE 142659.5124 206075.6701 239041.1121 120997.4094 159566.3502 163789.0697 129070.1481 140330.376 170990.3807 112878.0192 1.263837844 1.825649241 2.117694073 1.071930658 1.413617561 1.451027144 1.143448025 1.243203743 1.514824427 1 16.78440505 -5.274225743 24.99600306 1.281893799 1.744719295 0.429238591 0.249265657 714.2855548 1396351.95 0.06986938 0.104379181 5.32E-06 5.274225743 0.462825496 YYMSDDISRDS(ph)DGMDEQCR ddPTM_HeLa_A486_30min_R1 1 YYMSDDISRDSDGMDEQCR 19 1 P46100-4;P46100;P46100-5;P46100-3;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNN3;A0A096LNL6 P46100-4 ATRX Transcriptional regulator ATRX 1 0 YYMS(0.003)DDIS(0.048)RDS(0.948)DGMDEQCR 43.523 0.030579 186210000 54689 81081 117570 11462 171440 50130 49779 58973 74407 22220 TRUE FALSE FALSE 50855.58351 74655.84627 163096.2526 26684.11526 149936.3966 43945.47028 37323.76769 45546.13527 80856.65867 16655.96737 3.053295097 4.482228177 9.792061247 1.60207538 9.001962674 2.638421972 2.240864602 2.734523565 4.854515914 1 14.02375153 YYS(ph)DS(ph)DDELTVEQR ddPTM_HeLa_A485_30min_R1 2 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 YYS(1)DS(1)DDELTVEQR;YYS(1)DS(1)DDELTVEQR ; 322.39 6.39E-69 1017420000 1256580 1418260 1338650 1773880 1865360 1310210 1829540 1638900 1468350 2123140 TRUE FALSE FALSE 1536101.886 1584113.17 1833872.341 1870782.573 1679638.209 1378810.57 1438643.833 1236957.205 1763034.376 1593880.271 0.963749858 0.993872123 1.150570952 1.17372842 1.053804504 0.865065334 0.902604705 0.776066576 1.106127234 1 20.60411183 -6.182477685 6.121240235 0.914561697 1.075105606 0.313016811 0.100211835 0.264322799 16.42914946 0.033892378 0.033854704 6.57E-07 6.182477685 0.160543909 YYS(ph)DS(ph)DDELTVEQR ddPTM_HeLa_A486_30min_R1 2 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 YYS(1)DS(1)DDELTVEQR;Y(0.001)Y(0.001)S(0.999)DS(1)DDELTVEQR ; 241.98 4.90E-35 1956310000 1747260 1850710 1362540 726730 1865430 1751360 2055110 2031620 1640460 1983970 TRUE FALSE FALSE 1624786.097 1704052.999 1890151.978 1691864.167 1631450.375 1535295.01 1540899.741 1569064.476 1782656.394 1487170.999 1.092534818 1.145835281 1.270971516 1.137639295 1.097015997 1.032359434 1.036128154 1.055066618 1.198689589 1 20.50413911 -5.764550228 3.123961171 1.066664036 1.171407981 0.338271482 0.064458315 0.288944316 5.832828012 0.021014653 0.026106947 1.72E-06 5.764550228 0.104743944 YYSDS(ph)DDELTVEQR ddPTM_HeLa_A485_30min_R1 1 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 YYS(0.002)DS(0.998)DDELTVEQR 183.6 2.09E-17 267010000 149760 180760 210290 151500 236260 189780 215570 192940 207840 217900 TRUE FALSE FALSE 183073.5953 201898.3096 288085.0219 159776.0614 212737.1248 199716.5873 169511.7085 145621.1625 249551.5816 163581.5402 1.119158037 1.234236512 1.761109607 0.976736502 1.300495916 1.220899297 1.036252063 0.890205352 1.525548551 1 17.31965043 YYSDS(ph)DDELTVEQR ddPTM_HeLa_A486_30min_R1 2 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 YYSDS(1)DDELTVEQR;YYSDS(1)DDELTVEQR ; 270.97 8.81E-49 388200000 264762 295370 228190 96137 309400 271540 290080 309610 234470 281020 TRUE FALSE FALSE 246203.551 271963.8055 316551.2791 223811.7945 270592.167 238040.1556 217498.9158 239118.5617 254794.0484 210650.7629 1.168775976 1.291064897 1.502730277 1.062477968 1.284553463 1.130022756 1.03250951 1.135142159 1.209556732 1 17.68449362 -5.886102769 1.257735212 1.105753561 1.298339304 0.315155863 0.117287293 0.554937107 1.84546143 0.049588351 0.062927772 1.30E-06 5.886102769 0.192585743 YYVLYIRPSHIHR ddPTM_HeLa_A485_30min_R1 2 YYVLYIRPSHIHR 13 1 A0A0A6YYH1;Q7Z6K5;Q7Z6K5-2 A0A0A6YYH1 C15orf38-AP3S2;ARPIN Arpin 0 0 ; ; 192.15 4.94E-11 81617000 96345 147142 127979 59068 99067 73913 97631 124546 77018 96407 FALSE FALSE TRUE 117776.6129 164348.9769 175323.7578 62294.73527 89203.54163 77782.97039 76771.33928 94000.89822 92474.80615 72374.50914 1.62732175 2.27081301 2.42245177 0.860727568 1.232527069 1.074728814 1.060751088 1.298812238 1.277726195 1 16.14319404 -5.262539127 24.99999863 1.128443244 2.123257282 0.800282202 0.226941329 40.66488207 924421.3088 0.063093949 0.099904962 5.46E-06 5.262539127 0.994814038 YYVTIIDAPGHR ddPTM_HeLa_A485_30min_R1 2 YYVTIIDAPGHR 12 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ; ; 142.07 0.00013716 443950000 306330 338490 419660 357960 546620 327980 466780 375010 395360 522310 FALSE FALSE TRUE 374472.0517 378073.461 574909.6975 377514.4484 492196.5935 345152.5256 367048.6398 283038.2095 474705.1255 392107.7294 0.955023387 0.964208131 1.466203429 0.96278247 1.255258585 0.880249227 0.936091314 0.721837873 1.210649752 1 18.58089056 -6.277399445 24.84367004 0.931525849 1.122423452 0.171981102 0.185361276 1249.677991 1945261.837 0.063756405 0.056406961 5.28E-07 6.277399445 0.190897603 YYVTIIDAPGHR ddPTM_HeLa_A486_30min_R1 3 YYVTIIDAPGHR 12 0 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01 P68104 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 0 0 ;; ;; 166.14 1.05E-07 1128070000 758350 929650 949200 293396 1176760 992790 1029430 960460 914590 853180 FALSE FALSE TRUE 705193.5811 855981.1483 1316755.66 683040.7154 1029159.788 870309.6637 771855.7258 741784.2247 993867.3976 639538.1747 1.102660653 1.338436363 2.058916438 1.068021804 1.609223387 1.360840835 1.20689547 1.159874819 1.554039207 1 19.28667095 -6.559697314 5.563280479 1.246549879 1.448246728 0.098542891 0.289744154 0.474606341 38.07630291 0.110181164 0.085979709 2.76E-07 6.559697314 0.201696849